PeakID (cmd=getDiffExpression.pl ./peakQuan/allRawTags_onlymuts.txt 00_cb6f1_c57 00_cb6f1_c57 00_cb6f1_c57 00_cb6f1_c57 01_cb6f1_balb 01_cb6f1_balb 01_cb6f1_balb 01_cb6f1_balb -peaks)	Chr	Start	End	Strand	Peak Score	Focus Ratio/Region Size	Annotation	Detailed Annotation	Distance to TSS	Nearest PromoterID	Entrez ID	Nearest Unigene	Nearest Refseq	Nearest Ensembl	Gene Name	Gene Alias	Gene Description	Gene Type	/home/h1bennet/strains/data/ATAC/control_f1/tag_only_muts_mouse_cb6f1j_Male_Kupffer_ATAC_Chow_healthyoung_CB61A_TDT_l20210213_CTAGTACG_TCGACTAG_S7_L001_trim30.mm10.bowtie2.sam	/home/h1bennet/strains/data/ATAC/control_f1/tag_only_muts_mouse_cb6f1j_Male_Kupffer_ATAC_Chow_healthyoung_CB61B_TDT_l20210213_TTCTGCCT_TTCTAGCT_S8_L001_trim30.mm10.bowtie2.sam	/home/h1bennet/strains/data/ATAC/control_f1/tag_only_muts_mouse_cb6f1j_Male_Kupffer_ATAC_Chow_healthyoung_CB61C_TDT_l20210213_GCTCAGGA_CCTAGAGT_S9_L001_trim30.mm10.bowtie2.sam	/home/h1bennet/strains/data/ATAC/control_f1/tag_only_muts_mouse_cb6f1j_Male_Kupffer_ATAC_Chow_healthyoung_CB61D_TDT_l20210213_AGGAGTCC_GCGTAAGA_S10_L001_trim30.mm10.bowtie2.sam	/home/h1bennet/strains/data/ATAC/control_f1/tag_only_muts_mouse_cb6f1j_Male_Kupffer_ATAC_Chow_healthyoung_CB61A_TDT_l20210213_CTAGTACG_TCGACTAG_S7_L001_trim30.balbcj.bowtie2_shifted_from_BALBCJ.sam	/home/h1bennet/strains/data/ATAC/control_f1/tag_only_muts_mouse_cb6f1j_Male_Kupffer_ATAC_Chow_healthyoung_CB61B_TDT_l20210213_TTCTGCCT_TTCTAGCT_S8_L001_trim30.balbcj.bowtie2_shifted_from_BALBCJ.sam	/home/h1bennet/strains/data/ATAC/control_f1/tag_only_muts_mouse_cb6f1j_Male_Kupffer_ATAC_Chow_healthyoung_CB61C_TDT_l20210213_GCTCAGGA_CCTAGAGT_S9_L001_trim30.balbcj.bowtie2_shifted_from_BALBCJ.sam	/home/h1bennet/strains/data/ATAC/control_f1/tag_only_muts_mouse_cb6f1j_Male_Kupffer_ATAC_Chow_healthyoung_CB61D_TDT_l20210213_AGGAGTCC_GCGTAAGA_S10_L001_trim30.balbcj.bowtie2_shifted_from_BALBCJ.sam	00_cb6f1_c57 vs. 01_cb6f1_balb Log2 Fold Change	00_cb6f1_c57 vs. 01_cb6f1_balb p-value	00_cb6f1_c57 vs. 01_cb6f1_balb adj. p-value
Merged-chr5-122769003-4	chr5	122768902	122769102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199676, intron 1 of 16)	intron (NM_001199676, intron 1 of 16)	10408.0	NM_001199676	207565.0	Mm.289237	NM_145358	ENSMUSG00000029471	Camkk2	6330570N16Rik|AW061083|mKIAA0787	calcium/calmodulin-dependent protein kinase kinase 2, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80269644-4	chr7	80269513	80269713	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178070)	promoter-TSS (NM_178070)	-42.0	NM_178070	233405.0	Mm.322870	NM_178070	ENSMUSG00000030534	Vps33b	-	vacuolar protein sorting 33B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-34844127-2	chr1	34844027	34844227	+	558.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1077.0	NM_001160236	214469.0	Mm.120151	NM_174997	ENSMUSG00000037503	Fam168b	Mani|mKIAA4042	family with sequence similarity 168, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-95513473-2	chr9	95513362	95513562	+	910.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1466.0	NM_001357974	67958.0	Mm.292742	NM_026476	ENSMUSG00000032407	U2surp	2610101N10Rik|AU023006|Sr140	U2 snRNP-associated SURP domain containing	protein-coding	1.29329831415324	1.62709167032288	2.57790886182425	1.52078843695016	0.924162762992332	1.25291803464873	1.58121747071642	1.66762523889104	-1.4513598246512	0.213305296205291	0.703038353542171
Merged-chr9-14074446-4	chr9	14074345	14074545	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-201856.0	NM_030261	75747.0	Mm.325126	NM_030261	ENSMUSG00000032009	Sesn3	5630400E15Rik|BC003348|SEST3	sestrin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-97929108-4	chr3	97929022	97929222	+	911.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1051.0	NM_001033779	433632.0	Mm.212421	NM_001033779		Gm5544	EG433632	predicted gene 5544	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-94838914-3	chr3	94838807	94839007	+	730.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001165948, intron 1 of 18)	intron (NM_001165948, intron 1 of 18)	1340.0	NM_172683	229584.0	Mm.274787	NM_172683	ENSMUSG00000038902	Pogz	9530006B08Rik	pogo transposable element with ZNF domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-35647514-4	chr7	35647423	35647623	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019746)	promoter-TSS (NM_019746)	-41.0	NM_019746	56330.0	Mm.371609	NM_019746	ENSMUSG00000030417	Pdcd5	2200003D22Rik|AA408513|Tfar19	programmed cell death 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-19705267-2	chr8	19705166	19705366	+	681.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-24310.0	NM_001270553	100861668.0	Mm.491087	NM_001270553	ENSMUSG00000095294	Gm21119	-	predicted gene, 21119	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6268303-4	chr19	6268200	6268400	+	974.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3456.0	NR_029720	387187.0		NR_029720	ENSMUSG00000065523	Mir192	Mirn192|mir-192|mmu-mir-192	microRNA 192	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-61654397-2	chr14	61654297	61654497	+	727.166687	f1_balb.idr|f1_c57bl6.idr	intron (NR_028264, intron 1 of 6)	B3A|SINE|B2	-22287.0	NR_029733	387174.0		NR_029733	ENSMUSG00000093007	Mir15a	Mirn15a|mir-15a|mmu-mir-15a	microRNA 15a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-74764340-3	chr14	74764256	74764456	+	872.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033439, intron 19 of 19)	intron (NM_001033439, intron 19 of 19)	32059.0	NM_016903	13885.0	Mm.38055	NM_016903	ENSMUSG00000021996	Esd	Es-10|Es10|FGH|sid478	esterase D/formylglutathione hydrolase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-94589888-4	chr15	94589770	94589970	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008971)	promoter-TSS (NM_008971)	-46.0	NM_008971	19230.0	Mm.490250	NM_008971	ENSMUSG00000022451	Twf1	A6|Ptk9|twinfilin	twinfilin actin binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-118861922-4	chr2	118861809	118862009	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019826)	promoter-TSS (NM_019826)	-91.0	NM_019826	56357.0	Mm.6635	NM_019826	ENSMUSG00000027332	Ivd	1300016K07Rik|6720455E18Rik|AI463340	isovaleryl coenzyme A dehydrogenase	protein-coding	5.1428006854067	3.9428360341789	5.14803162736893	5.21001857523322	5.32557323154572	4.22872822293619	5.68852790769166	5.10963778660478	0.275157352461142	0.479285078329485	0.928092227925527
Merged-chr3-137865751-4	chr3	137865658	137865858	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316995, intron 3 of 4)	CpG-9623	1271.0	NM_016750	51788.0	Mm.117541	NM_016750	ENSMUSG00000037894	H2afz	H2A.Z|H2a.z-1	H2A histone family, member Z	protein-coding	4.87692758574648	5.63777684318192	3.7210723877606	5.50285250739599	5.66126655571688	5.55727451619553	4.664929632338	5.42531888832424	0.313107766241954	0.427411213017552	0.902392427013133
Merged-chr11-117976327-2	chr11	117976227	117976427	+	844.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6961.0	NM_007707	12702.0	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-31609555-3	chr10	31609502	31609702	+	954.6587519999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001146349, exon 1 of 6)	5' UTR (NM_001146349, exon 1 of 6)	123.0	NM_001146349	268291.0	Mm.295212	NM_001146349	ENSMUSG00000063760	Rnf217	AU016819|Ibrdc1	ring finger protein 217	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-52083291-4	chr14	52083202	52083402	+	855.9249880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016884, intron 3 of 8)	intron (NM_016884, intron 3 of 8)	13987.0	NR_028552	100217457.0		NR_028552	ENSMUSG00000064871	Snord58b	MBII-199	small nucleolar RNA, C/D box 58B	snoRNA	2.71946847729838	2.30381931335433	2.84804620858683	2.86002240562952	2.65540608566202	2.31984713484899	2.86950718425317	2.87414565934563	-0.00672969467930557	0.992471384623408	0.998431161219273
Merged-chr4-149783326-4	chr4	149783247	149783447	+	757.68335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9080.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-82866972-1	chr18	82866872	82867072	+	552.0	f0_balb.idr	Intergenic	Intergenic	11075.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-139382140-3	chr4	139382055	139382255	+	776.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160319, intron 1 of 105)	B3A|SINE|B2	1496.0	NM_001160319	69116.0	Mm.271956	NM_001160319	ENSMUSG00000066036	Ubr4	1810009A16Rik|A930005E13Rik|D930005K06Rik|Gm1032|Gm1666|N28143|RBAF600|Zubr1|mKIAA0462|p600	ubiquitin protein ligase E3 component n-recognin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-26071765-3	chr12	26071684	26071884	+	819.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	138721.0	NR_131149	629481.0	Mm.390460	NR_131149	ENSMUSG00000113550	Gm29687	-	predicted gene, 29687	ncRNA	2.8226190969357	3.40695155471988	3.14462471065322	2.55001429560877	2.44771523958125	3.62366597487892	2.63974747579348	2.56238837228276	-0.182698260757584	0.794138300169714	0.998431161219273
Merged-chr1-184048862-4	chr1	184048761	184048961	+	969.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022019, intron 2 of 3)	intron (NM_022019, intron 2 of 3)	14480.0	NM_022019	63953.0	Mm.404024	NM_022019	ENSMUSG00000039384	Dusp10	2610306G15Rik|AI158871|MKP-5|MKP5	dual specificity phosphatase 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-115479070-4	chr9	115478940	115479140	+	780.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	97221.0	NR_130329	100316675.0		NR_130329	ENSMUSG00000080409	Mir467h	Mirn467h|mmu-mir-467h	microRNA 467h	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122560502-1	chr8	122560402	122560602	+	1000.0	f1_balb.idr	Intergenic	Intergenic	-7513.0	NM_026014	67177.0	Mm.21873	NM_026014	ENSMUSG00000006585	Cdt1	2610318F11Rik|AW545653|C76791|Ris2	chromatin licensing and DNA replication factor 1	protein-coding	-0.278487410220425	-0.266019401740409	-0.2701185003616	0.332766213925238	0.0889983663951125	-0.265093469966949	-0.269215618394927	0.0225647722571126	-0.0993388007537251	0.967794575018532	1
Merged-chr14-45041244-2	chr14	45041144	45041344	+	732.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53133.0	NM_008964	19217.0	Mm.4630	NM_008964	ENSMUSG00000037759	Ptger2	EP2|Ptgerep2	prostaglandin E receptor 2 (subtype EP2)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3804961-2	chr4	3804861	3805061	+	850.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30694.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-38597629-2	chr6	38597529	38597729	+	885.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001170848, intron 7 of 8)	B2_Mm2|SINE|B2	39610.0	NM_001033171	74253.0	Mm.121859	NM_001033171	ENSMUSG00000071537	Klrg2	2310020F24Rik	killer cell lectin-like receptor subfamily G, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-62005709-4	chr11	62005614	62005814	+	887.05835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310526, intron 1 of 7)	intron (NM_001310526, intron 1 of 7)	48951.0	NM_001310526	432572.0	Mm.438022	NM_001029936	ENSMUSG00000042331	Specc1	2810012G08Rik|B230396K10Rik|Cytsb	sperm antigen with calponin homology and coiled-coil domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-119837566-4	chr1	119837464	119837664	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019933)	promoter-TSS (NM_019933)	-493.0	NM_019933	19258.0	Mm.458796	NM_019933	ENSMUSG00000026384	Ptpn4	PTPMEG|Ptn4|TEP|TEP/mPTPMEG|hPTP-MEG	protein tyrosine phosphatase, non-receptor type 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-33503716-3	chr1	33503622	33503822	+	756.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008922, intron 10 of 13)	Tigger14a|DNA|TcMar-Tigger	166072.0	NM_008922	19076.0	Mm.27705	NM_008922	ENSMUSG00000026134	Prim2	AI323589	DNA primase, p58 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-147523020-2	chr4	147522920	147523120	+	777.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR18A_MM|LTR|ERVK	-30257.0	NM_001014397	433804.0	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154	zinc finger protein 985	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-86880585-2	chr10	86880485	86880685	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_138673, intron 44 of 68)	intron (NM_138673, intron 44 of 68)	101580.0	NM_175331	103466.0	Mm.200446	NM_175331	ENSMUSG00000054027	Nt5dc3	AU040402|AW540062|C630002B14Rik|TU12B1-TY	5'-nucleotidase domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-99789788-4	chr12	99789709	99789909	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030172, intron 5 of 5)	intron (NM_030172, intron 5 of 5)	93633.0	NM_030172	78767.0	Mm.235920	NM_030172	ENSMUSG00000021176	Efcab11	2610021K21Rik|2610110A13Rik	EF-hand calcium binding domain 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-116175255-4	chr9	116175177	116175377	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009371)	promoter-TSS (NM_009371)	86.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	5.03683089202636	4.36872263975062	4.40573656350304	4.79006563849571	4.87415375733664	4.84021000824009	4.54670249370819	4.65024542973235	0.055993590970967	0.875104599873722	0.998431161219273
Merged-chr1-107500673-2	chr1	107500573	107500773	+	969.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-10750.0	NM_001174170	18788.0	Mm.271870	NM_011111	ENSMUSG00000062345	Serpinb2	PAI-2|Planh2|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-134182904-2	chr5	134182804	134183004	+	963.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1134.0	NM_001359852	114674.0	Mm.218744	NM_053266	ENSMUSG00000015942	Gtf2ird2	1700012P16Rik	GTF2I repeat domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-41937385-4	chr10	41937258	41937458	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034858, intron 12 of 17)	intron (NM_001034858, intron 12 of 17)	49919.0	NM_001013370	140742.0	Mm.139418	NM_001013370	ENSMUSG00000038332	Sesn1	1110002G11Rik|AU044290|Pa26|Sest1	sestrin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28444795-4	chr7	28444697	28444897	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039192, intron 4 of 6)	intron (NM_001039192, intron 4 of 6)	3860.0	NM_001039192	63986.0	Mm.194536	NM_022024	ENSMUSG00000060791	Gmfg	0610039G16Rik|2310057N07Rik|AI324845	glia maturation factor, gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-105911167-1	chr2	105911067	105911267	+	571.0	f1_c57bl6.idr	intron (NM_028260, intron 2 of 6)	RMER1B|Other|Other	6529.0	NM_028260	66541.0	Mm.272253	NM_028260	ENSMUSG00000042670	Immp1l	1500034J20Rik|2610528O17Rik|AU042386	IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135878608-2	chr4	135878508	135878708	+	706.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-4762.0	NM_026383	52830.0	Mm.29159	NM_026383	ENSMUSG00000028675	Pnrc2	0610011E17Rik|D4Bwg0593e	proline-rich nuclear receptor coactivator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-104732295-4	chr2	104732184	104732384	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144804, intron 1 of 8)	intron (NM_144804, intron 1 of 8)	10517.0	NM_144804	211896.0	Mm.288805	NM_144804	ENSMUSG00000027173	Depdc7	AV216087	DEP domain containing 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-90138577-4	chr7	90138487	90138687	+	963.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360867, intron 1 of 19)	intron (NM_001360867, intron 1 of 19)	8374.0	NM_001252520	233489.0	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-149859415-2	chr1	149859315	149859515	+	831.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008869, intron 13 of 17)	intron (NM_008869, intron 13 of 17)	63024.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-123267063-4	chr6	123266967	123267167	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010819, exon 3 of 6)	exon (NM_010819, exon 3 of 6)	4960.0	NM_010819	17474.0	Mm.441101	NM_010819	ENSMUSG00000030144	Clec4d	Clecsf8|Mpcl|mcl	C-type lectin domain family 4, member d	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116423479-2	chr11	116423287	116423487	+	624.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-10355.0	NM_027258	217340.0	Mm.426344	NM_027258	ENSMUSG00000052949	Rnf157	2610036E23Rik|A130073L17Rik|mKIAA1917	ring finger protein 157	protein-coding	2.1809974158704	1.3720957842159	3.2488346225419	2.21447302057399	2.20173798070698	1.0833113940238	1.04979711348412	1.28980569934563	-2.18595423975559	0.0510678226302289	0.329651220902521
Merged-chr3-137952999-4	chr3	137952905	137953105	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011932, intron 3 of 8)	intron (NM_011932, intron 3 of 8)	28544.0	NM_001310753	26377.0	Mm.254835	NM_011932	ENSMUSG00000028159	Dapp1	Bam32	dual adaptor for phosphotyrosine and 3-phosphoinositides 1	protein-coding	2.71689392674992	2.06945091050702	2.61917128531712	1.9440324365023	2.73953106504457	2.82699368873871	1.36017248629209	1.78098929841868	-0.108371000522808	0.907339319448891	0.998431161219273
Merged-chr14-10546138-4	chr14	10546041	10546241	+	807.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360141, intron 4 of 9)	intron (NM_001360141, intron 4 of 9)	-92683.0	NM_001308286	14198.0	Mm.397619	NM_010210	ENSMUSG00000060579	Fhit	AW045638|Fra14A2	fragile histidine triad gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150589562-1	chr4	150589462	150589662	+	689.0	f0_balb.idr	intron (NM_001085492, intron 12 of 22)	intron (NM_001085492, intron 12 of 22)	62612.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-40586753-2	chr12	40586653	40586853	+	990.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	Lx7|LINE|L1	140700.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-125111477-2	chr4	125111377	125111577	+	739.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_151472, exon 8 of 8)	non-coding (NR_151472, exon 8 of 8)	16404.0	NM_153159	230738.0	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-72995653-2	chr2	72995553	72995753	+	839.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15207.0	NM_001018042	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52631155-2	chr13	52631055	52631255	+	607.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_011518, intron 7 of 13)	intron (NM_011518, intron 7 of 13)	34273.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-11438423-4	chr2	11438336	11438536	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39936.0	NR_040615	77543.0	Mm.490670	NR_040615	ENSMUSG00000102674	8030442B05Rik	-	RIKEN cDNA 8030442B05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105453459-4	chr8	105453383	105453583	+	807.19165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033371, intron 6 of 10)	intron (NM_001033371, intron 6 of 10)	17939.0	NM_026481	67971.0	Mm.29358	NM_026481	ENSMUSG00000014846	Tppp3	2700055K07Rik|CGI-38|Ceacam9|mmCGM8	tubulin polymerization-promoting protein family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-64083376-4	chr15	64083274	64083474	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22926.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-44783336-4	chr17	44783232	44783432	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178652, intron 1 of 11)	intron (NM_178652, intron 1 of 11)	6166.0	NM_178652	109115.0	Mm.431327	NM_178652	ENSMUSG00000038954	Supt3	2310066G22Rik|AI315192|SPT3|SPT3L|Supt3h	suppressor of Ty 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-164440361-3	chr1	164440253	164440453	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009721, intron 4 of 5)	intron (NM_009721, intron 4 of 5)	18002.0	NM_009721	11931.0	Mm.4550	NM_009721	ENSMUSG00000026576	Atp1b1	Atp4b|Atpb|Atpb-1|NKbeta1	ATPase, Na+/K+ transporting, beta 1 polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-6369635-1	chr4	6369535	6369735	+	578.0	f0_balb.idr	intron (NM_001098227, intron 1 of 8)	intron (NM_001098227, intron 1 of 8)	3955.0	NM_001098227	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-72196731-3	chr2	72196619	72196819	+	944.7999880000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355478, intron 8 of 26)	ID_B1|SINE|B4	-88918.0	NM_023057	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	4.58589052785227	4.18092792277946	4.46748024438393	4.213323939025	3.88690209792033	3.33754104778012	2.95056714573708	3.68184532193478	-1.18217410473516	0.0110438240305418	0.116572258696575
Merged-chr1-15805018-2	chr1	15804918	15805118	+	713.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_152944)	promoter-TSS (NR_152944)	-628.0	NM_009352	21749.0	Mm.4306	NM_009352	ENSMUSG00000025925	Terf1	Pin2|Trbf1|Trf1	telomeric repeat binding factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-24592535-4	chr12	24592427	24592627	+	850.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145890, intron 6 of 13)	intron (NM_145890, intron 6 of 13)	11808.0	NM_145890	195733.0	Mm.263068	NM_145890	ENSMUSG00000020656	Grhl1	LBP-32|MGR|Tcfcp2l2	grainyhead like transcription factor 1	protein-coding	1.61251016994479	0.975958953244957	2.12925654305958	1.59297450872168	1.26762719418555	0.979791200005202	1.5211911402822	1.7154837446611	-0.817422698579022	0.508073736739091	0.943374049681311
Merged-chr15-79892360-4	chr15	79892299	79892499	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001160415)	promoter-TSS (NM_001160415)	-9.0	NM_001160415	80287.0	Mm.284059	NM_030255	ENSMUSG00000009585	Apobec3	Apobec|Arp3|BC003314|Cem15|Gm20117|Rfv3	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 3	protein-coding	6.04555739243014	4.54191299382793	5.28677697274633	4.98000866538293	5.8691754659926	5.34219082987361	5.79360037657071	6.06500786141081	0.513052988958815	0.122939058274669	0.549697945781172
Merged-chr16-59421046-4	chr16	59420938	59421138	+	751.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081190, intron 2 of 8)	intron (NM_001081190, intron 2 of 8)	13656.0	NM_001081190	328699.0	Mm.451970	NM_001081190	ENSMUSG00000074991	Gabrr3	-	gamma-aminobutyric acid (GABA) receptor, rho 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-46604486-4	chr18	46604377	46604577	+	731.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010120, intron 2 of 2)	intron (NM_010120, intron 2 of 2)	6773.0	NM_010120	13664.0	Mm.262037	NM_010120	ENSMUSG00000057561	Eif1a	C76390|Ef1a|Eftu|Eif4c|eIF-1A|eIF-4C	eukaryotic translation initiation factor 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-97356449-2	chr7	97356349	97356549	+	994.916626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-15168.0	NM_199035	381903.0	Mm.279683	NM_199035	ENSMUSG00000035704	Alg8	AI447372|Gm1089	asparagine-linked glycosylation 8 (alpha-1,3-glucosyltransferase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-20717738-4	chr16	20717653	20717853	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145632)	promoter-TSS (NM_145632)	-73.0	NM_145632	245841.0	Mm.288730	NM_145632	ENSMUSG00000021018	Polr2h	-	polymerase (RNA) II (DNA directed) polypeptide H	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55734109-3	chr14	55734016	55734216	+	854.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11568.0	NM_026819	52585.0	Mm.21623	NM_026819	ENSMUSG00000002332	Dhrs1	1110029G07Rik|AW112170|D14Ertd484e	dehydrogenase/reductase (SDR family) member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-118477100-3	chr1	118477015	118477215	+	609.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359330, intron 8 of 39)	B3|SINE|B2	-17850.0	NR_027901	68204.0	Mm.443536	NR_027901	ENSMUSG00000107722	2900060B14Rik	-	RIKEN cDNA 2900060B14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-64025227-2	chr9	64025127	64025327	+	742.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3168.0	NM_008542	17130.0	Mm.325757	NM_008542	ENSMUSG00000036867	Smad6	Madh6|b2b390Clo	SMAD family member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71562805-5	chr8	71562627	71562827	+	872.4933470000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_145598, exon 2 of 2)	exon (NM_145598, exon 2 of 2)	-3856.0	NM_001100462	434325.0	Mm.33613	NM_001100462	ENSMUSG00000043664	Tmem221	-	transmembrane protein 221	protein-coding	1.96033266494733	1.17166288361751	1.38644513193311	2.34469399813712	2.07168779973966	1.17717278944895	2.15167395872397	2.35741454551307	0.529941136911815	0.636436104125288	0.982417279970648
Merged-chr4-109059643-3	chr4	109059530	109059730	+	965.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146150, intron 27 of 30)	intron (NM_146150, intron 27 of 30)	41975.0	NR_030432	791075.0		NR_030432	ENSMUSG00000076444	Mir761	Mirn761|mir-761|mmu-mir-761	microRNA 761	ncRNA	2.3984521571818	2.12455467256248	2.92344162027606	2.42409045509071	2.8626665909179	1.37236911931696	3.83818070083877	1.2817114198757	0.541160073128692	0.577538244787209	0.96585843058813
Merged-chr6-114259747-2	chr6	114259647	114259847	+	570.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22888.0	NM_178703	232333.0	Mm.5260	NM_178703	ENSMUSG00000030310	Slc6a1	A730043E01|GABATHG|GABATR|GAT-1|Gabt|Gabt1|Gat1|XT-1|Xtrp1	solute carrier family 6 (neurotransmitter transporter, GABA), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-186221722-3	chr1	186221706	186221906	+	938.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-104496.0	NM_146106	226791.0	Mm.257116	NM_146106	ENSMUSG00000039246	Lyplal1	BC027340|Q96AVO	lysophospholipase-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-99344705-4	chr13	99344600	99344800	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026873)	promoter-TSS (NM_026873)	-22.0	NM_026873	68927.0	Mm.276502	NM_026873	ENSMUSG00000021650	Ptcd2	1190005P08Rik	pentatricopeptide repeat domain 2	protein-coding	6.13818725644334	5.94787587930366	5.875345352961	6.07502844621224	5.5319548161224	5.8036394511976	6.41503387489371	5.78586104388941	-0.106794988126079	0.67299902211531	0.99440487726309
Merged-chr17-65745068-4	chr17	65744985	65745185	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133685, intron 1 of 6)	MTE2a|LTR|ERVL-MaLR	27667.0	NM_133685	106572.0	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-59862583-4	chr4	59862495	59862695	+	977.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172468, intron 2 of 8)	L1_Mus4|LINE|L1	52461.0	NM_021053	30936.0	Mm.284433	NM_021053	ENSMUSG00000028386	Slc46a2	5430429N04Rik|Ly110|TSO-1C12|Tscot	solute carrier family 46, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-120087920-3	chr4	120087819	120088019	+	949.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010657, intron 3 of 8)	L1M4|LINE|L1	-73287.0	NM_007902	13615.0	Mm.284855	NM_007902	ENSMUSG00000028635	Edn2	ET-2|PPET2|VIC	endothelin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116098086-1	chr11	116097986	116098186	+	658.0	f1_balb.idr	Intergenic	Intergenic	-11091.0	NM_001347642	22378.0	Mm.284792	NM_016852	ENSMUSG00000034341	Wbp2	-	WW domain binding protein 2	protein-coding	1.41799817560266	1.59748203640284	2.23377891660041	2.4284862973743	1.01575648114023	2.70016169532948	1.07826799633214	1.82449064184731	-0.296897491821036	0.79755220509411	0.998431161219273
Merged-chr13-101681725-2	chr13	101681625	101681825	+	852.75	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001077495, exon 16 of 16)	3' UTR (NM_001077495, exon 16 of 16)	10905.0	NM_001024955	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-6264494-2	chr11	6264394	6264594	+	910.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026538, intron 7 of 13)	intron (NM_026538, intron 7 of 13)	3235.0	NM_026538	52513.0	Mm.29810	NM_026538	ENSMUSG00000004393	Ddx56	2600001H07Rik|D11Ertd619e|Noh61	DEAD (Asp-Glu-Ala-Asp) box polypeptide 56	protein-coding	-1.8418762459921	-1.8125357239735	-1.82140854000656	-1.82869693527674	-1.56059678980999	-1.8106129477253	-1.81939992894326	-1.82739231600805	1.3620893379502	0.699511506488145	1
Merged-chr9-56258103-3	chr9	56258027	56258227	+	885.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172924, exon 4 of 7)	exon (NM_172924, exon 4 of 7)	-97057.0	NM_019793	56434.0	Mm.28484	NM_019793	ENSMUSG00000032324	Tspan3	1700055K04Rik|TM4-A|Tm4sf8	tetraspanin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-85311069-1	chr1	85310969	85311169	+	585.0	f1_balb.idr	Intergenic	B3|SINE|B2	-40503.0	NM_001037909	620078.0	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik	RIKEN cDNA C130026I21 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-30460084-4	chr6	30459978	30460178	+	872.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_131049)	promoter-TSS (NR_131049)	-907.0	NR_131049	69337.0	Mm.396168	NR_131049	ENSMUSG00000085470	1700012C14Rik	-	RIKEN cDNA 1700012C14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-87812851-3	chr10	87812744	87812944	+	904.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45421.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-29008901-3	chr7	29008799	29008999	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009109, intron 100 of 105)	intron (NM_009109, intron 100 of 105)	26045.0	NM_008279	26411.0	Mm.148278	NM_008279	ENSMUSG00000037337	Map4k1	Hpk1|mHPK1	mitogen-activated protein kinase kinase kinase kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-19888655-4	chr5	19888560	19888760	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170746, intron 2 of 22)	intron (NM_001170746, intron 2 of 22)	-18858.0	NM_001170745	50791.0	Mm.332231	NM_015823	ENSMUSG00000040003	Magi2	AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705	membrane associated guanylate kinase, WW and PDZ domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-174438961-4	chr2	174438849	174439049	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022325)	promoter-TSS (NM_022325)	90.0	NM_022325	64138.0	Mm.156919	NM_022325	ENSMUSG00000016256	Ctsz	AI787083|AU019819|CTSX|D2Wsu143e	cathepsin Z	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122434101-2	chr8	122434001	122434201	+	856.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_138656, exon 10 of 10)	exon (NM_138656, exon 10 of 10)	-1161.0	NM_007806	13057.0	Mm.271671	NM_007806	ENSMUSG00000006519	Cyba	b558|nmf333|p22-phox|p22phox	cytochrome b-245, alpha polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-121110360-4	chr6	121110225	121110425	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001270475, intron 1 of 31)	intron (NM_001270475, intron 1 of 31)	20697.0	NM_001270475	194401.0	Mm.122399	NM_153396	ENSMUSG00000051586	Mical3	C130040D16Rik|Mical-3|mKIAA1364	microtubule associated monooxygenase, calponin and LIM domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-27533556-2	chr7	27533456	27533656	+	642.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001317355, intron 12 of 13)	intron (NM_001317355, intron 12 of 13)	10295.0	NM_001033315	233020.0	Mm.429716	NM_001033315	ENSMUSG00000040424	Hipk4	Gm162	homeodomain interacting protein kinase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-41356937-4	chr4	41356835	41357035	+	841.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355508, intron 1 of 6)	B4|SINE|B4	4972.0	NM_001355508	67123.0	Mm.289795	NM_023305	ENSMUSG00000028437	Ubap1	2700092A01Rik|NAG20|UBAP-1|Ubap	ubiquitin-associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4777315-4	chr16	4777197	4777397	+	987.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358082, intron 1 of 5)	intron (NM_001358082, intron 1 of 5)	12165.0	NM_001358078	66626.0	Mm.157648	NM_025670	ENSMUSG00000004071	Cdip1	2700048O17Rik|5730403B10Rik|AU018521|AW742692|CDIP	cell death inducing Trp53 target 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101976464-2	chr11	101976364	101976564	+	810.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028207, intron 2 of 2)	intron (NM_028207, intron 2 of 2)	8327.0	NM_028207	72349.0	Mm.196295	NM_028207	ENSMUSG00000003518	Dusp3	2210015O03Rik|5031436O03Rik|T-DSP11|VHR	dual specificity phosphatase 3 (vaccinia virus phosphatase VH1-related)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21804538-4	chr9	21804468	21804668	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177030, intron 43 of 49)	intron (NM_177030, intron 43 of 49)	5432.0	NR_106051	102465657.0		NR_106051	ENSMUSG00000098473	Mir7083	Gm27888|mmu-mir-7083	microRNA 7083	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-98494522-4	chr10	98494414	98494614	+	848.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-142647.0	NR_045179	667438.0	Mm.414522	NR_045179	ENSMUSG00000112896	Gm8633	EG667438	predicted gene 8633	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-19394338-4	chr13	19394227	19394427	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347485, intron 1 of 7)	intron (NM_001347485, intron 1 of 7)	1486.0	NM_024270	76205.0	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-44429971-2	chr11	44429871	44430071	+	553.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29908.0	NM_001303244	16160.0	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-173427555-4	chr1	173427449	173427649	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013779, intron 1 of 8)	RMER19B|LTR|ERVK	6945.0	NM_001013779	383619.0	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-149339948-1	chr4	149339848	149340048	+	563.0	f0_balb.idr	intron (NM_022022, intron 22 of 26)	intron (NM_022022, intron 22 of 26)	5309.0	NR_131918	74310.0	Mm.440455	NR_131918	ENSMUSG00000085286	Ube4bos3	1700121F15Rik	ubiquitination factor E4B, opposite strand 3	ncRNA	0.0668220380519994	-0.0538689177670513	-0.0584870044436689	0.341126408436302	0.294961524323601	-0.0528256134832571	0.49239351828344	-0.0614188614887115	0.878209006849262	0.685887073983684	1
Merged-chr5-111273808-2	chr5	111273708	111273908	+	642.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001267622, intron 14 of 22)	intron (NM_001267622, intron 14 of 22)	-56889.0	NM_001301644	56305.0	Mm.200516	NM_019640	ENSMUSG00000050017	Pitpnb	PI-TP-beta	phosphatidylinositol transfer protein, beta	protein-coding	-0.856514135634246	-1.09469227775237	-1.10552271286179	-0.697223595536493	-1.11557875604084	-1.09234527728392	-1.10307093974939	-1.11268246321507	-2.58516358545631	0.423881157370444	1
Merged-chr3-88158136-2	chr3	88158036	88158236	+	655.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_133665, exon 4 of 11)	exon (NM_133665, exon 4 of 11)	15764.0	NM_133665	17261.0	Mm.28184	NM_133665	ENSMUSG00000001419	Mef2d	C80750	myocyte enhancer factor 2D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-58247862-2	chr15	58247762	58247962	+	680.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32970.0	NM_026346	67731.0	Mm.25683	NM_026346	ENSMUSG00000022358	Fbxo32	4833442G10Rik|AI430017|ATROGIN1|Gm20361|MAFbx	F-box protein 32	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-136811558-4	chr6	136811465	136811665	+	915.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	3317.0	NM_177688	232440.0	Mm.154564	NM_177688	ENSMUSG00000060032	H2afj	E130307C13	H2A histone family, member J	protein-coding	4.74516141074514	4.94263917196052	4.79367472603385	4.49322538298071	4.04908968949002	4.93189121682005	4.74047037540043	4.85054340805854	-0.09240303042804	0.799187769732588	0.998431161219273
Merged-chr7-88259071-2	chr7	88258971	88259171	+	612.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A2|LTR|ERVL-MaLR	-19014.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-19880601-2	chr10	19880501	19880701	+	737.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161825, intron 7 of 8)	intron (NM_001161825, intron 7 of 8)	27073.0	NM_008822	18634.0	Mm.338363	NM_008822	ENSMUSG00000020003	Pex7	MmPEX7	peroxisomal biogenesis factor 7	protein-coding	0.255739495898618	0.823365838218877	0.273309508254354	1.22071127854713	0.257387073439025	0.833811307408092	0.275175415064766	0.454965784855557	-1.31115144770762	0.489166413413177	1
Merged-chr5-121823328-2	chr5	121823279	121823479	+	747.395874	f1_balb.idr|f1_c57bl6.idr	intron (NM_001306126, intron 3 of 8)	intron (NM_001306126, intron 3 of 8)	-4106.0	NR_105998	102465624.0		NR_105998	ENSMUSG00000099063	Mir7031	Gm27859|mmu-mir-7031	microRNA 7031	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98975459-3	chr11	98975358	98975558	+	752.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001177303)	TTS (NM_001177303)	7558.0	NM_178596	353155.0	Mm.453253	NM_178596	ENSMUSG00000047197	Gjd3	Gja11|Gjc1|cx30.2	gap junction protein, delta 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-44733752-8	chr13	44733656	44733856	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205043, intron 1 of 17)	CpG	2485.0	NM_001205043	16468.0	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	4.17083964378309	3.84276068386742	3.71757579502503	3.61534729701437	3.30550790766247	4.08184557208873	3.74584574048958	3.38695977194707	-0.292402159491587	0.55515831996271	0.959914380895535
Merged-chr11-115471990-2	chr11	115471890	115472090	+	608.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359606, intron 3 of 3)	intron (NM_001359606, intron 3 of 3)	-3677.0	NM_177778	276905.0	Mm.38019	NM_177778	ENSMUSG00000057219	Armc7	A630084C13|BC023126	armadillo repeat containing 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-87425346-2	chr11	87425246	87425446	+	679.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_031386, intron 1 of 30)	intron (NM_031386, intron 1 of 30)	-2245.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118362620-3	chr11	118362513	118362713	+	977.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7202.0	NM_011594	21858.0	Mm.206505	NM_011594	ENSMUSG00000017466	Timp2	D11Bwg1104e|Timp-2	tissue inhibitor of metalloproteinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76712968-1	chr15	76712868	76713068	+	881.5	f1_balb.idr	exon (NM_145471, exon 4 of 6)	exon (NM_145471, exon 4 of 6)	2327.0	NM_001358893	223664.0	Mm.277582	NM_145471	ENSMUSG00000033728	Lrrc14	E130306I01Rik|mKIAA0014	leucine rich repeat containing 14	protein-coding	0.113313593980217	-0.151446830988247	0.186054407765153	0.747171638160676	-0.167143289248452	-0.15021724741915	-0.155705880821821	-0.160403967843018	-3.92807733280693	0.0807180991876004	1
Merged-chr6-21973658-4	chr6	21973582	21973782	+	939.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_023626, exon 12 of 12)	exon (NM_023626, exon 12 of 12)	-12228.0	NM_001081351	214642.0	Mm.221404	NM_001081351	ENSMUSG00000062980	Cped1	6720481P07|A430107O13Rik|AI552584	cadherin-like and PC-esterase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-178507532-1	chr2	178507432	178507632	+	612.0	f0_balb.idr	Intergenic	Intergenic	77017.0	NM_198656	381409.0	Mm.330860	NM_198656	ENSMUSG00000039155	Cdh26	Gm1010	cadherin-like 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32548145-4	chr2	32548038	32548238	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153560, intron 1 of 10)	intron (NM_153560, intron 1 of 10)	12779.0	NM_153560	98952.0	Mm.4065	NM_153560	ENSMUSG00000039157	Fam102a	AI426465|C230093N12Rik|Eeig1	family with sequence similarity 102, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-189887687-1	chr1	189887587	189887787	+	575.0	f0_balb.idr	intron (NM_026796, intron 7 of 11)	intron (NM_026796, intron 7 of 11)	34604.0	NM_026796	226830.0	Mm.156895	NM_026796	ENSMUSG00000026603	Smyd2	1110020E07Rik|4930402C15|KMT3C|Zmynd14	SET and MYND domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-32754098-4	chr5	32753999	32754199	+	833.604126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177298, intron 3 of 7)	intron (NM_177298, intron 3 of 7)	-7757.0	NM_001347332	320951.0	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	1.32049882558644	1.90422349060199	1.01491617366382	1.97786948035678	1.96735142820288	1.48022313119606	1.01917624444394	1.89412219593689	0.087121596655051	0.942892273863926	0.998431161219273
Merged-chr16-17921998-4	chr16	17921928	17922128	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	6191.0	NM_153150	13358.0	Mm.229291	NM_153150	ENSMUSG00000003528	Slc25a1	1300019P08Rik|2610100G11Rik|AI194714|Ctp|Dgsj|Slc20a3	solute carrier family 25 (mitochondrial carrier, citrate transporter), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-9882138-2	chr2	9882038	9882238	+	776.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_040511)	TTS (NR_040511)	892.0	NR_024257	381347.0	Mm.441450	NR_024257		4930412O13Rik	Gm10853	RIKEN cDNA 4930412O13 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71192193-4	chr17	71192074	71192274	+	942.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022882, intron 1 of 19)	L1MC3|LINE|L1	8196.0	NM_022882	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4614506-2	chr16	4614406	4614606	+	549.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_031184, exon 7 of 7)	3' UTR (NM_031184, exon 7 of 7)	10440.0	NM_025571	66449.0	Mm.354760	NM_025571	ENSMUSG00000014301	Pam16	2010110I09Rik|AV006767|CGI-136|Magmas|Tim16|Timm16	presequence translocase-asssociated motor 16 homolog (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-64867841-3	chr1	64867771	64867971	+	677.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039493, intron 5 of 7)	intron (NM_001039493, intron 5 of 7)	88953.0	NM_001039493	241075.0	Mm.239534	NM_175509	ENSMUSG00000051344	Plekhm3	9430067K14Rik|A230102O09Rik|AI449570|DAPR|Plekhm1l	pleckstrin homology domain containing, family M, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-4909267-2	chr17	4909167	4909367	+	652.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-85807.0	NM_001085355	239985.0	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-19745992-3	chr14	19745893	19746093	+	980.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5264.0	NM_008695	18074.0	Mm.20348	NM_008695	ENSMUSG00000021806	Nid2	AW547149|Ly111|NID-2|entactin-2|nidogen-2	nidogen 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-13283184-1	chr11	13283084	13283284	+	542.0	f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	-818224.0	NM_001282993	12808.0	Mm.22847	NM_172496	ENSMUSG00000020173	Cobl	-	cordon-bleu WH2 repeat	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-125272849-2	chr5	125272749	125272949	+	673.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	68245.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-48075736-3	chr4	48075652	48075852	+	668.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015743, intron 7 of 7)	intron (NM_015743, intron 7 of 7)	24506.0	NM_001307989	18124.0	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-60673163-4	chr13	60673057	60673257	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	70946.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-46997362-2	chr13	46997262	46997462	+	573.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	17488.0	NM_175340	105193.0	Mm.25593	NM_175340	ENSMUSG00000044231	Nhlrc1	AI505271|B230309E09Rik|EPM2B	NHL repeat containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-114664916-2	chr5	114664816	114665016	+	866.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6495.0	NM_022017	63873.0	Mm.266450	NM_022017	ENSMUSG00000014158	Trpv4	0610033B08Rik|OTRPC4|Trp12|VR-OAC|VRL-2|VROAC	transient receptor potential cation channel, subfamily V, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-83995833-2	chr8	83995738	83995938	+	923.25	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001277898, exon 10 of 10)	3' UTR (NM_001277898, exon 10 of 10)	-1834.0	NM_001081415	666704.0	Mm.298091	NM_001081415	ENSMUSG00000079003	Samd1	AA589507	sterile alpha motif domain containing 1	protein-coding	1.36682946931741	1.07287154919477	0.518837916246793	1.30413953788575	0.499551606426659	0.531296799894675	0.521093460016396	0.99338062345826	-2.40666681339625	0.165996482582008	0.631325645610976
Merged-chr6-48434903-1	chr6	48434803	48435003	+	849.0	f1_c57bl6.idr	intron (NM_001085417, intron 4 of 4)	intron (NM_001085417, intron 4 of 4)	10187.0	NM_001085415	68910.0	Mm.2464	NM_020589	ENSMUSG00000068551	Zfp467	1190001I08Rik|AB041616|AI426952|AV017623|EZI|MNCb-3350|Znf467	zinc finger protein 467	protein-coding	1.97021331090004	1.60184285894193	0.824804672961343	0.985372203341759	0.955353350472348	1.61501445216376	0.827054492412749	0.818314580725716	-1.49717997386044	0.314329130790368	0.816303227537411
Merged-chr12-8501054-4	chr12	8500980	8501180	+	999.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1071.0	NM_007483	11852.0	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	3.67094186394506	4.03588599031258	3.30336096840784	4.20016891443806	4.07886090482729	3.83581596616131	3.330535182632	4.56166989138141	0.260659876950159	0.600851877684542	0.972964840983327
Merged-chr15-76538788-4	chr15	76538669	76538869	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013909)	promoter-TSS (NM_013909)	-23.0	NM_013909	30840.0	Mm.275279	NM_013909	ENSMUSG00000022559	Fbxl6	AU021795|Fbl6	F-box and leucine-rich repeat protein 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-68656600-3	chr11	68656513	68656713	+	749.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35302.0	NM_175260	77579.0	Mm.218233	NM_175260	ENSMUSG00000020900	Myh10	5730504C04Rik|9330167F11Rik|Fltn|Myhn-2|Myhn2|NMHC II-B|NMHC-B|NMHCII-B|NMMHC II-b|NMMHC-B|NMMHC-IIB|SMemb|mKIAA3005	myosin, heavy polypeptide 10, non-muscle	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150865532-2	chr4	150865432	150865632	+	738.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356323, intron 3 of 3)	intron (NM_001356323, intron 3 of 3)	10462.0	NM_133753	74155.0	Mm.318841	NM_133753	ENSMUSG00000028967	Errfi1	1300002F13Rik|AI788755|Mig-6|Mig6|RALT	ERBB receptor feedback inhibitor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-91062581-4	chr1	91062477	91062677	+	960.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008515, intron 1 of 22)	intron (NM_008515, intron 1 of 22)	9133.0	NM_001310732	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-170550254-2	chr1	170550154	170550354	+	760.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001109985, intron 1 of 9)	intron (NM_001109985, intron 1 of 9)	6856.0	NM_027528	70729.0	Mm.409310	NM_027528	ENSMUSG00000038473	Nos1ap	6330408P19Rik|Capon	nitric oxide synthase 1 (neuronal) adaptor protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153557571-4	chr2	153557481	153557681	+	966.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27610.0	NM_001134300	329540.0	Mm.50600	NM_001001986	ENSMUSG00000061411	Nol4l	4931410H15|8430427H17Rik|AI429157|Gm1636	nucleolar protein 4-like	protein-coding	1.38414075955746	2.45183804446676	1.68839005935955	2.70083531839509	1.73164760033892	1.53862623486243	2.02702668810729	2.57041552500918	-0.336047032137433	0.734662298340214	0.998431161219273
Merged-chr14-66868127-2	chr14	66868027	66868227	+	930.125	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001034881)	promoter-TSS (NM_001034881)	473.0	NM_009955	12934.0	Mm.352648	NM_009955	ENSMUSG00000022048	Dpysl2	AI851130|Crmp2|DRP2|Musunc33|TOAD-64|Ulip2	dihydropyrimidinase-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-156540770-4	chr2	156540770	156540970	+	887.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_013510, exon 22 of 22)	3' UTR (NM_013510, exon 22 of 22)	-6706.0	NM_026661	68295.0	Mm.253648	NM_026661	ENSMUSG00000027628	Aar2	0610011L14Rik	AAR2 splicing factor homolog	protein-coding	-0.704347454874818	-1.05455977589609	-1.06579631309813	-1.07151958844463	-1.07425770968218	-0.707535259853554	-1.06325260737347	-1.07118043667044	-0.117338903016028	0.971356004086452	1
Merged-chr13-13889640-4	chr13	13889547	13889747	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65027.0	NM_001362404	97884.0	Mm.21686	NM_178640	ENSMUSG00000039242	B3galnt2	A930105D20Rik|C80633|D230016N13Rik	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-104630825-4	chr8	104630774	104630974	+	892.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_019662, exon 2 of 5)	exon (NM_019662, exon 2 of 5)	447.0	NM_019662	56437.0	Mm.29467	NM_019662	ENSMUSG00000031880	Rrad	REM3|Rad	Ras-related associated with diabetes	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5566279-2	chr19	5566179	5566379	+	946.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1745.0	NM_001362046	381201.0	Mm.441906	NM_001033448	ENSMUSG00000049562	Ap5b1	Gm962|beta-5	adaptor-related protein complex 5, beta 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-30625335-4	chr13	30625221	30625421	+	852.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10278.0	NR_045975	75090.0	Mm.292232	NR_045975	ENSMUSG00000086263	4930519D14Rik	-	RIKEN cDNA 4930519D14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-23547341-4	chr17	23547231	23547431	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3468.0	NR_126485	320020.0	Mm.445111	NR_126484		6330415G19Rik	-	RIKEN cDNA 6330415G19 gene	ncRNA	4.78994116459907	4.17739643458225	3.5195293348966	4.73947509190414	5.42330965525701	3.97010214182022	3.91683079721927	4.93864569315892	0.405945229147439	0.390846857167805	0.88013900005618
Merged-chr4-15233890-3	chr4	15233793	15233993	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31927.0	NM_181401	100201.0	Mm.394111	NM_181401	ENSMUSG00000043252	Tmem64	9630015D15Rik|AI790744|AV300874	transmembrane protein 64	protein-coding	2.01344161398938	1.25790559571552	1.22206057223382	1.45139343023229	2.66156565358187	2.92005804532608	2.73849932547089	2.47383934624843	2.9449275231624	0.00296903515960394	0.0450537316757101
Merged-chr4-53158844-4	chr4	53158757	53158957	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 1 of 49)	intron (NM_013454, intron 1 of 49)	1038.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	6.79141316592109	6.37820368972188	6.57909427280821	6.71933100378621	6.51581553368905	6.41500824080061	6.71365547140598	6.46376152654086	-0.106604894887866	0.581246840895099	0.966599221005409
Merged-chr17-5537487-2	chr17	5537387	5537587	+	553.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	44887.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25651454-4	chr7	25651356	25651556	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007533, intron 1 of 8)	intron (NM_007533, intron 1 of 8)	7305.0	NM_007533	12039.0	Mm.25848	NM_007533	ENSMUSG00000060376	Bckdha	-	branched chain ketoacid dehydrogenase E1, alpha polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102367868-2	chr12	102367768	102367968	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177620, intron 5 of 9)	intron (NM_177620, intron 5 of 9)	71945.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-99544102-3	chr6	99543993	99544193	+	823.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23100.0	NM_001347345	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126211110-4	chr7	126211012	126211212	+	923.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14|LTR|ERV1	-10611.0	NM_028816	74204.0	Mm.235663	NM_028816	ENSMUSG00000000131	Xpo6	2610005L19Rik|AL022631|C230091E20Rik|R75304|Ranbp20|exp6|mKIAA0370	exportin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-120348794-2	chr2	120348694	120348894	+	660.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_147153, intron 2 of 25)	B1_Mur2|SINE|Alu	4339.0	NR_027618	269338.0	Mm.246131	NM_147153	ENSMUSG00000027291	Vps39	A230065P22Rik|AW743070|Vam6|Vam6P|mVam6	VPS39 HOPS complex subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-123425842-4	chr4	123425725	123425925	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199137, intron 52 of 92)	intron (NM_001199137, intron 52 of 92)	-13914.0	NM_001167918	442834.0	Mm.483803	NM_001167918		D830031N03Rik	Kiaa0754|mKIAA0754	RIKEN cDNA D830031N03 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-88768375-2	chr5	88768275	88768475	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007832, intron 1 of 6)	intron (NM_007832, intron 1 of 6)	3362.0	NM_007832	13178.0	Mm.298892	NM_007832	ENSMUSG00000029366	Dck	-	deoxycytidine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-40730009-2	chr19	40729909	40730109	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001304721, intron 7 of 9)	intron (NM_001304721, intron 7 of 9)	70239.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-121408554-7	chr2	121408545	121408745	+	921.328247	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153075, intron 4 of 12)	Lx5c|LINE|L1	5147.0	NM_153075	212670.0	Mm.384318	NM_153075	ENSMUSG00000033486	Catsper2	-	cation channel, sperm associated 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116336656-2	chr11	116336566	116336766	+	616.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_027258, exon 19 of 19)	3' UTR (NM_027258, exon 19 of 19)	-1312.0	NM_008240	15223.0	Mm.378938	NM_008240	ENSMUSG00000034227	Foxj1	FKHL-13|HFH-4|Hfh4	forkhead box J1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-37241312-4	chr12	37241202	37241402	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178767)	promoter-TSS (NM_178767)	-337.0	NM_178767	319660.0	Mm.485540	NM_178767	ENSMUSG00000050103	Agmo	A530016O06Rik|AI790538|Tmem195	alkylglycerol monooxygenase	protein-coding	4.04923149872045	4.23932290232772	3.63873737411392	3.61403327284639	3.21415746093193	4.42735691872575	3.39545927462218	3.28763356982934	-0.33858236854572	0.519391088875617	0.947641799425091
Merged-chr10-97402711-2	chr10	97402611	97402811	+	797.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20767.0	NR_039547	100628616.0		NR_039547	ENSMUSG00000105557	Mir3966	mmu-mir-3966|mu-mir-3966	microRNA 3966	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-4207324-4	chr7	4207224	4207424	+	923.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30430.0	NM_001081239	232801.0	Mm.258061	NM_001081239	ENSMUSG00000070873	Lilra5	E030017K20|EG232801|Gm4878|Lilrc1	leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-3382801-4	chr11	3382687	3382887	+	991.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010718, intron 2 of 15)	intron (NM_010718, intron 2 of 15)	-11383.0	NM_173053	16886.0	Mm.124176	NM_010718	ENSMUSG00000020451	Limk2	Limk-2|whe	LIM motif-containing protein kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-8997077-2	chr3	8996994	8997194	+	964.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009412, intron 1 of 5)	L1_Mus1|LINE|L1	7110.0	NM_001357073	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-42091096-4	chr19	42091006	42091206	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145501, intron 1 of 8)	intron (NM_145501, intron 1 of 8)	671.0	NM_145501	84095.0	Mm.117037	NM_145501	ENSMUSG00000025178	Pi4k2a	Pi4k2	phosphatidylinositol 4-kinase type 2 alpha	protein-coding	5.09657536062866	4.61179713973782	4.35137851169243	4.04308098965334	5.50475395563264	4.74934211012868	4.83309956329253	4.56581775566558	0.466601838839782	0.230917690872721	0.725291027636617
Merged-chr17-22817749-4	chr17	22817576	22817776	+	975.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_030709)	promoter-TSS (NR_030709)	71.0	NR_030709	100042679.0	Mm.484007	NR_030709		Gm16386	EG545191|Gm21017	zinc finger protein 946 pseudogene	pseudo	3.66145437432201	4.36822128486997	4.23408086041702	3.96875756604556	2.75757778793588	2.82195905913871	3.98893780111272	3.25427523439271	-1.1317712590543	0.0355996160510161	0.267175266918322
Merged-chr8-11456955-2	chr8	11456855	11457055	+	752.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011227, intron 1 of 1)	intron (NM_011227, intron 1 of 1)	-20974.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-57231193-4	chr12	57231111	57231311	+	918.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164370, intron 1 of 9)	B1_Mm|SINE|Alu	786.0	NM_001164370	73490.0	Mm.268180	NM_001164370	ENSMUSG00000047022	Mipol1	1700081O04Rik|6030439O22Rik|AU021838|AW536152|D12Ertd19e	mirror-image polydactyly 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-43398403-4	chr13	43398336	43398536	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023554)	promoter-TSS (NM_023554)	60.0	NM_023554	70078.0	Mm.439927	NM_023554	ENSMUSG00000063200	Nol7	2210008F15Rik|5730556I21Rik|NOP27|RARG-1	nucleolar protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-78299356-4	chr12	78299305	78299505	+	978.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172952, intron 1 of 23)	L1_Mur1|LINE|L1	72750.0	NM_145965	268566.0	Mm.341742	NM_145965	ENSMUSG00000047454	Gphn	5730552E08Rik|AI662856|BC027112|C230040D23|GPH|GPHRYN|geph	gephyrin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-64737714-4	chr9	64737623	64737823	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017382)	promoter-TSS (NM_017382)	33.0	NM_017382	53869.0	Mm.1387	NM_017382	ENSMUSG00000004771	Rab11a	-	RAB11A, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-47033346-2	chr11	47033246	47033446	+	895.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011891, intron 6 of 7)	intron (NM_011891, intron 6 of 7)	222547.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27820717-4	chr17	27820617	27820817	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271511)	promoter-TSS (NM_001271511)	-175.0	NM_001271511	224647.0	Mm.196577	NM_001033279	ENSMUSG00000056692	D17Wsu92e	AU020189|C030010A15|C80239	DNA segment, Chr 17, Wayne State University 92, expressed	protein-coding	7.09652640338147	7.5057533948823	7.03734402296254	7.18754001281466	7.2391223846704	7.02058043883839	7.01207723878009	7.00160552788113	-0.146466316762776	0.385644911382979	0.876208997621446
Merged-chr6-108331420-3	chr6	108331326	108331526	+	773.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 4 of 61)	intron (NM_010585, intron 4 of 61)	118330.0	NM_010585	16438.0	Mm.227912	NM_010585	ENSMUSG00000030102	Itpr1	D6Pas2|Gm10429|IP3R 1|IP3R1|InsP3R|Ip3r|Itpr-1|P400|Pcp-1|Pcp1|insP3R1|opt|wblo	inositol 1,4,5-trisphosphate receptor 1	protein-coding	1.63223401956657	1.3258063344321	1.63554684149382	1.43779348328843	1.21687282568158	2.20033399714448	1.48733135846652	2.29561310908912	1.14521427413458	0.292838196229998	0.797431320709244
Merged-chr10-4675161-3	chr10	4675062	4675262	+	816.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_126357, intron 2 of 7)	intron (NR_126357, intron 2 of 7)	-34996.0	NM_001302531	13982.0	Mm.9213	NM_007956	ENSMUSG00000019768	Esr1	ER|ER-alpha|ERa|ERalpha|ESR|Estr|Estra|Nr3a1	estrogen receptor 1 (alpha)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-40531360-1	chr9	40531260	40531460	+	648.0	f0_balb.idr	promoter-TSS (NM_001357617)	promoter-TSS (NM_001357617)	23.0	NM_001357617	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	0.859702635341089	1.04571013588192	0.278072438029074	0.27210718749472	0.421588478193112	0.287484527520661	0.892418317192356	0.273151585004076	-0.945653435233164	0.6195271624447	1
Merged-chr19-4395014-2	chr19	4394914	4395114	+	560.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001984, intron 1 of 20)	intron (NM_001001984, intron 1 of 20)	2063.0	NM_001001984	225876.0	Mm.31941	NM_001001984	ENSMUSG00000054611	Kdm2a	100043628|5530401A10Rik|AA589516|AW536790|Cxxc8|Fbl11|Fbl7|Fbxl11|Gm4560|Jhdm1|Jhdm1a|lalina	lysine (K)-specific demethylase 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-41529045-3	chr4	41528960	41529160	+	896.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027993, intron 1 of 5)	intron (NM_027993, intron 1 of 5)	11623.0	NR_045726	76992.0	Mm.440546	NR_045726	ENSMUSG00000036162	Fam219aos	1700066J24Rik	family with sequence similarity 219, member A, opposite strand	ncRNA	-1.22315906685268	-1.19557143632602	-1.20673282037136	-0.55836125556573	-1.22265483704505	-1.19315271784257	-1.20420612767407	-1.21425999345206	-2.67891099987134	0.437057736398543	1
Merged-chr8-36238257-4	chr8	36238174	36238374	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081150, intron 1 of 11)	intron (NM_001081150, intron 1 of 11)	11242.0	NM_001081150	244421.0	Mm.324032	NM_001081150	ENSMUSG00000039633	Lonrf1	-	LON peptidase N-terminal domain and ring finger 1	protein-coding	4.39317895126622	4.83942782092019	4.85974238450934	3.54151623410244	4.82952502091572	5.19298938670493	5.1778222644318	4.04425968578677	0.472109113800862	0.262186946165756	0.763524024295326
Merged-chr8-56550730-4	chr8	56550653	56550853	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015791)	promoter-TSS (NM_015791)	-187.0	NM_001009951	382010.0	Mm.425534	NM_001009951	ENSMUSG00000038215	Cep44	4933440G23Rik|mKIAA1712	centrosomal protein 44	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-30272809-4	chr18	30272708	30272908	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181414)	promoter-TSS (NM_181414)	-57.0	NM_181414	225326.0	Mm.194127	NM_181414	ENSMUSG00000033628	Pik3c3	5330434F23Rik|Vps34	phosphatidylinositol 3-kinase catalytic subunit type 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-127153558-3	chr6	127153432	127153632	+	974.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040275, intron 1 of 1)	intron (NR_040275, intron 1 of 1)	-2484.0	NM_009829	12444.0	Mm.333406	NM_009829	ENSMUSG00000000184	Ccnd2	2600016F06Rik|AI256817|BF642806|C86853|Vin-1|Vin1|cD2	cyclin D2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-152670487-2	chr2	152670387	152670587	+	568.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010376, intron 1 of 11)	RSINE1|SINE|B4	1026.0	NM_001159552	14950.0	Mm.277327	NM_010376	ENSMUSG00000019188	H13	1200006O09Rik|4930443L17Rik|5031424B04Rik|AV020344|H-13|Hm13|PSL3|Spp	histocompatibility 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-17780126-4	chr13	17780012	17780212	+	718.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027118, intron 1 of 13)	ORR1E|LTR|ERVL-MaLR	24985.0	NM_001081058	69562.0	Mm.193924	NM_027118	ENSMUSG00000041297	Cdk13	2310015O17Rik|Cdc2l5	cyclin-dependent kinase 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-122830646-2	chr14	122830546	122830746	+	769.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_153443, intron 22 of 24)	MTA_Mm|LTR|ERVL-MaLR	-82384.0	NR_155287	105245866.0	Mm.390754	NM_001039531	ENSMUSG00000075463	Gm15735	4930594M22Rik|F930011C10Rik	predicted gene 15735	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-144452826-3	chr2	144452716	144452916	+	899.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6464.0	NR_033459	668917.0	Mm.152805	NR_033459	ENSMUSG00000083674	Zfp133-ps	Zfp133	zinc finger protein 133, pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5840231-2	chr17	5840131	5840331	+	731.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1149.0	NM_025664	66616.0	Mm.89515	NM_025664	ENSMUSG00000002365	Snx9	2700073N08Rik|SDP1|SH3PX1	sorting nexin 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-115711343-4	chr8	115711241	115711441	+	910.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4447.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-134853262-2	chr1	134853162	134853362	+	723.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081307, intron 13 of 23)	intron (NM_001081307, intron 13 of 23)	-49541.0	NR_015606	329251.0	Mm.188709	NM_001081307	ENSMUSG00000073557	Ppp1r12b	1810037O03Rik|9530009M10Rik|AI132431|Mypt2	protein phosphatase 1, regulatory (inhibitor) subunit 12B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-60488404-3	chr13	60488305	60488505	+	723.600037	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-113542.0	NM_001285917	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-63071805-2	chr14	63071705	63071905	+	585.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16732.0	NR_046019	72609.0	Mm.387101	NR_046019		2700070H01Rik	-	RIKEN cDNA 2700070H01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-4874322-4	chr12	4874232	4874432	+	813.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033488)	promoter-TSS (NM_001033488)	27.0	NM_001033488	432628.0	Mm.154078	NM_001033488	ENSMUSG00000037336	Mfsd2b	Gm1964	major facilitator superfamily domain containing 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128526054-4	chr10	128525950	128526150	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011843)	promoter-TSS (NM_011843)	-191.0	NM_011843	23943.0	Mm.66056	NM_011843	ENSMUSG00000025366	Esyt1	Fam62a|Mbc2|vp115	extended synaptotagmin-like protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59787303-3	chr15	59787187	59787387	+	778.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7672.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-45092585-4	chr12	45092474	45092674	+	976.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18091.0	NM_144552	217517.0	Mm.285400	NM_144552	ENSMUSG00000046314	Stxbp6	BC024598|C85317	syntaxin binding protein 6 (amisyn)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-75836644-3	chr12	75836545	75836745	+	614.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005510, intron 1 of 115)	intron (NM_001005510, intron 1 of 115)	18327.0	NM_001005510	319565.0	Mm.26652	NM_001005510	ENSMUSG00000063450	Syne2	6820443O06Rik|AW546258|Cpfl8|D12Ertd777e|KASH2|NUA|Nesp2g|dice|mKIAA1011	spectrin repeat containing, nuclear envelope 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106819124-3	chr11	106819028	106819228	+	687.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_025481)	TTS (NM_025481)	29876.0	NM_001166685	320162.0	Mm.30524	NM_177088	ENSMUSG00000018372	Cep95	4732496G21Rik|AI118346|AI448335|Ccdc45|D330027A14Rik|F630025I20Rik	centrosomal protein 95	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-37178029-4	chr19	37177894	37178094	+	907.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045329, intron 2 of 2)	intron (NR_045329, intron 2 of 2)	-1931.0	NM_001290826	208922.0	Mm.391176	NM_198300	ENSMUSG00000039652	Cpeb3	4831444O18Rik|CPE-BP3|mKIAA0940	cytoplasmic polyadenylation element binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-83349394-2	chr17	83349294	83349494	+	827.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-1537.0	NM_001114361	78798.0	Mm.295565	NM_199466	ENSMUSG00000032624	Eml4	4930443C24Rik|AI644019	echinoderm microtubule associated protein like 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123586010-4	chr5	123585877	123586077	+	994.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001359223)	TTS (NM_001359223)	-12962.0	NM_029929	77573.0	Mm.41372	NM_029929	ENSMUSG00000029434	Vps33a	3830421M04Rik|AI503300|AW048546|AW554476|bf	VPS33A CORVET/HOPS core subunit	protein-coding	0.0804450944573856	-0.546571919332183	-0.0954075542714276	-0.553126768240406	-0.557153373867139	-0.545736798247731	-0.549457782891307	-0.552628580148565	-3.41605350555988	0.215528136390678	1
Merged-chr15-82040866-2	chr15	82040766	82040966	+	722.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_011482)	TTS (NM_011482)	6732.0	NM_011482	20826.0	Mm.299312	NM_011482	ENSMUSG00000063480	Snu13	FA-1|Fta1|Nhp2l1|Ssfa1	SNU13 homolog, small nuclear ribonucleoprotein (U4/U6.U5)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-142354134-2	chr7	142354021	142354221	+	844.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177265, intron 2 of 3)	intron (NM_177265, intron 2 of 3)	18138.0	NM_177265	320802.0	Mm.154486	NM_177265	ENSMUSG00000045777	Ifitm10	6330512M04Rik|AI848576|DSPA3	interferon induced transmembrane protein 10	protein-coding	0.68090427233235	-0.0225779720904735	0.545043183536179	0.275025618007991	-0.0382367716087876	-0.0213466619575543	-0.02683775884965	-0.0315272065811454	-3.97609143143304	0.0705975059421034	1
Merged-chr16-30790743-2	chr16	30790643	30790843	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	191020.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-111577651-4	chr9	111577544	111577744	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016853, intron 8 of 10)	intron (NM_016853, intron 8 of 10)	112704.0	NM_016853	20840.0	Mm.1414	NM_016853	ENSMUSG00000032502	Stac	-	src homology three (SH3) and cysteine rich domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-31148186-2	chr8	31148086	31148286	+	919.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-2130.0	NM_144927	234138.0	Mm.349800	NM_144927	ENSMUSG00000031577	Tti2	-	TELO2 interacting protein 2	protein-coding	-1.04531683603191	-1.02581293166572	-0.8616953419324	-1.041940273817	-0.474408478429688	-1.02331133748823	-1.03474348466247	-1.04158435529582	1.79237213044897	0.574552991922956	1
Merged-chr11-54885091-4	chr11	54885011	54885211	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17743.0	NM_001329860	14778.0	Mm.200916	NM_008161	ENSMUSG00000018339	Gpx3	AA960521|EGPx|GPx|GSHPx-3|GSHPx-P	glutathione peroxidase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-100040896-4	chr15	100040797	100040997	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159361, intron 1 of 37)	intron (NM_001159361, intron 1 of 37)	2233.0	NM_001159361	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6975817-2	chr19	6975717	6975917	+	916.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008889, intron 1 of 3)	intron (NM_008889, intron 1 of 3)	769.0	NM_008889	18938.0	Mm.140	NM_008889	ENSMUSG00000056612	Ppp1r14b	AOM172|PHI-1|PLCB3N|Png	protein phosphatase 1, regulatory (inhibitor) subunit 14B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-4167997-2	chr8	4167897	4168097	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346730, intron 1 of 19)	intron (NM_001346730, intron 1 of 19)	1430.0	NM_001346730	213027.0	Mm.437106	NM_153536	ENSMUSG00000011832	Evi5l	1700084G18Rik|2310039H16Rik|3110007G05Rik|B130050I23Rik	ecotropic viral integration site 5 like	protein-coding	1.52029835266772	0.801058799915278	1.99379139335464	0.764060066959723	0.740006296984669	1.76800184579813	2.18148056957978	0.766961673861245	0.434265205955598	0.768773283071362	0.998431161219273
Merged-chr2-148849571-2	chr2	148849471	148849671	+	642.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029960, intron 1 of 2)	intron (NM_029960, intron 1 of 2)	1363.0	NM_029960	77705.0	Mm.159975	NM_029960	ENSMUSG00000027446	9230104L09Rik	mCST E2	RIKEN cDNA 9230104L09 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-102434219-2	chr7	102434119	102434319	+	606.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009287, intron 11 of 11)	intron (NM_009287, intron 11 of 11)	-7476.0	NM_009103	20133.0	Mm.197486	NM_009103	ENSMUSG00000030978	Rrm1	RnrM1	ribonucleotide reductase M1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-4026119-2	chr15	4026019	4026219	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024188)	promoter-TSS (NM_024188)	-309.0	NM_024188	67041.0	Mm.13445	NM_024188	ENSMUSG00000022186	Oxct1	2610008O03Rik|Oxct|Oxct2a|Scot-s	3-oxoacid CoA transferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-54721166-2	chr5	54721066	54721266	+	579.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	371174.0	NR_038045	330086.0	Mm.254449	NM_177871	ENSMUSG00000105912	Gm10440	D130065D13	predicted gene 10440	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-75055890-3	chr10	75055795	75055995	+	964.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5001.0	NM_001081412	110279.0	Mm.333722	NM_001081412	ENSMUSG00000009681	Bcr	5133400C09Rik|AI561783|AI853148|mKIAA3017	breakpoint cluster region	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5849317-4	chr19	5849222	5849422	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3842.0	NR_003513	66961.0	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31156627-2	chr14	31156527	31156727	+	650.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_138672, intron 21 of 68)	B3A|SINE|B2	12014.0	NM_138672	192187.0	Mm.220821	NM_138672	ENSMUSG00000042286	Stab1	FEEL-1|FELE-1|MFEEL-1|MS-1|STAB-1|mKIAA0246	stabilin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5606582-1	chr19	5606482	5606682	+	918.0	f1_balb.idr	intron (NR_155544, intron 9 of 14)	intron (NR_155544, intron 9 of 14)	3125.0	NR_037603	81601.0	Mm.228930	NM_178637	ENSMUSG00000024926	Kat5	AI839539|CPLA2|Htatip|Htatip1|PLIP|Tip55|Tip60	K(lysine) acetyltransferase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-136235722-4	chr3	136235585	136235785	+	863.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033350, intron 5 of 16)	Lx8b|LINE|L1	90381.0	NM_001310749	242248.0	Mm.30832	NM_001033350	ENSMUSG00000037922	Bank1	A530094C12Rik|AI451642|AVIEF|BANK	B cell scaffold protein with ankyrin repeats 1	protein-coding	0.801050322953278	0.888251385035764	1.69728636528577	1.77321610352405	0.806916974214466	2.28060032864092	2.71998679799837	1.10483160762954	1.58165174841932	0.227018881081423	0.71997232966636
Merged-chr17-80108783-2	chr17	80108683	80108883	+	602.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-18688.0	NM_176963	319625.0	Mm.29098	NM_176963	ENSMUSG00000035473	Galm	A530057M15Rik|AU015645|AU020959	galactose mutarotase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-173768920-1	chr2	173768820	173769020	+	600.0	f0_balb.idr	intron (NM_019806, intron 2 of 5)	intron (NM_019806, intron 2 of 5)	31349.0	NM_019806	56491.0	Mm.260456	NM_019806	ENSMUSG00000054455	Vapb	AI225786|AI840687|AI848259|D2Abb2e|R75548|VAP33b|Vamp33b	vesicle-associated membrane protein, associated protein B and C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166066160-2	chr2	166066060	166066260	+	700.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008679, intron 18 of 22)	intron (NM_008679, intron 18 of 22)	73523.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-105891209-4	chr1	105891092	105891292	+	953.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	99090.0	NR_151625	635504.0	Mm.359717	NR_151625		Gm7160	EG635504	predicted gene 7160	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-6795224-3	chr17	6795178	6795378	+	926.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4_|SINE|ID	-12498.0	NM_009510	22350.0	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-129829643-2	chr3	129829543	129829743	+	657.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026578, intron 2 of 6)	intron (NM_026578, intron 2 of 6)	1753.0	NM_026578	68147.0	Mm.24873	NM_026578	ENSMUSG00000028010	Gar1	AA409823|AI326794|C430047J18Rik|Nola1	GAR1 ribonucleoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-118691094-4	chr14	118690978	118691178	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163676, intron 1 of 29)	intron (NM_001163676, intron 1 of 29)	-14147.0	NM_001163675	239273.0	Mm.40537	NM_001033336	ENSMUSG00000032849	Abcc4	ABCC4-N1|D630049P08Rik|MOATB|MRP4	ATP-binding cassette, sub-family C (CFTR/MRP), member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-27449609-4	chr3	27449494	27449694	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356953, intron 23 of 26)	intron (NM_001356953, intron 23 of 26)	78243.0	NM_177330	208188.0	Mm.194721	NM_177330	ENSMUSG00000051136	Ghsr	C530020I22Rik|GHRP|GHS-R|Ghsr1a	growth hormone secretagogue receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-31155987-4	chr7	31155898	31156098	+	959.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4827.0	NR_153431	52857.0	Mm.27366	NM_027898	ENSMUSG00000001248	Gramd1a	1300003M23Rik|AI415002|AW547240|D7Bwg0611e	GRAM domain containing 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19343639-4	chr7	19343535	19343735	+	893.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1436.0	NM_001127324	13870.0	Mm.280913	NM_007948	ENSMUSG00000003549	Ercc1	Ercc-1	excision repair cross-complementing rodent repair deficiency, complementation group 1	protein-coding	4.81640254008919	4.05186108497275	3.83991438824288	3.80561528683698	5.03193555363284	4.08126260323177	3.50876854700431	4.45457257977648	0.24573978593304	0.609977045836061	0.974992433107985
Merged-chr11-48817919-2	chr11	48817819	48818019	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145377)	promoter-TSS (NM_145377)	-528.0	NM_145377	211007.0	Mm.794	NM_145377	ENSMUSG00000040365	Trim41	AW552703|BC020156|R75223|RINCK	tripartite motif-containing 41	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70190545-2	chr8	70190445	70190645	+	588.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001007570, intron 3 of 7)	intron (NM_001007570, intron 3 of 7)	18137.0	NR_122028	234371.0	Mm.23488	NM_145597	ENSMUSG00000002342	Tmem161a	AI428876|BB161850|BC021367	transmembrane protein 161A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-80337988-2	chr12	80337888	80338088	+	548.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177267, exon 9 of 9)	3' UTR (NM_177267, exon 9 of 9)	53689.0	NR_037207	100526530.0		NR_037207	ENSMUSG00000105972	Mir1843a	Mir1843|mir-1843a|mmu-mir-1843|mmu-mir-1843a	microRNA 1843a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-36135712-2	chr2	36135612	36135812	+	790.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026422)	promoter-TSS (NM_026422)	-686.0	NM_026422	67871.0	Mm.378232	NM_026422	ENSMUSG00000026887	Mrrf	2400002D02Rik|MRFF|MTRRF|RRF	mitochondrial ribosome recycling factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-46445524-2	chr18	46445424	46445624	+	651.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20292.0	NR_045438	72076.0	Mm.82766	NM_028086		Mospd4	2010013H21Rik	motile sperm domain containing 4	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-77865026-2	chr10	77864926	77865126	+	585.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001287074, intron 3 of 11)	intron (NM_001287074, intron 3 of 11)	3051.0	NM_001101631	100041351.0	Mm.441672	NM_001101631	ENSMUSG00000111915	Gm3285	-	predicted gene 3285	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-121848076-4	chr11	121847948	121848148	+	955.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17830.0	NM_029049	74675.0	Mm.61213	NM_029049	ENSMUSG00000039198	Ptchd3	4930451E13Rik|4933440L20Rik|RNDEu-3	patched domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-118702249-3	chr7	118702139	118702339	+	789.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019580, intron 1 of 5)	B1_Mur1|SINE|Alu	3499.0	NM_019580	56209.0	Mm.273142	NM_019580	ENSMUSG00000033917	Gde1	1200003M13Rik|Mir16|RGS16	glycerophosphodiester phosphodiesterase 1	protein-coding	1.24038067941748	1.57019975174021	2.56272900686303	1.77210308492073	1.90917673012903	1.7563343948269	1.09420167158614	1.90306056474344	-0.525498094922453	0.635608518484239	0.982417279970648
Merged-chr12-110436914-4	chr12	110436817	110437017	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10262.0	NM_001135001	26931.0	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27015104-1	chr17	27015004	27015204	+	918.0	f1_balb.idr	Intergenic	PB1D9|SINE|Alu	-2931.0	NM_001251881	70772.0	Mm.440437	NM_027544	ENSMUSG00000048731	Ggnbp1	0610031G08Rik|mdf	gametogenetin binding protein 1	protein-coding	-1.10384998116487	-1.07946603826229	-1.09181520747217	-1.09984628216847	-1.10325314425446	-1.07678992177872	-1.08901962624914	-0.315793331868817	3.00679100283758	0.36959816332642	1
Merged-chr17-30010001-1	chr17	30009901	30010101	+	598.0	f1_c57bl6.idr	intron (NR_151443, intron 1 of 4)	Lx8|LINE|L1	4962.0	NM_001356265	21769.0	Mm.220972	NM_148926	ENSMUSG00000044477	Zfand3	AW539211|TEG-27|Tex27	zinc finger, AN1-type domain 3	protein-coding	-1.24828316191544	-0.892800936685318	-1.23202906245481	-1.24061112419506	-0.974021644710049	-1.2193172876339	-1.22966392945662	-1.23907493924675	-0.237298167666112	0.944287483248506	1
Merged-chr6-79958173-2	chr6	79958073	79958273	+	644.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	-60704.0	NM_001282102	243499.0	Mm.483425	NM_178731	ENSMUSG00000052581	Lrrtm4	7530419J18Rik|A230052N11	leucine rich repeat transmembrane neuronal 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47485923-2	chr17	47485823	47486023	+	678.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356290, intron 7 of 7)	L2a|LINE|L2	16368.0	NM_001356290	63856.0	Mm.275901	NM_022015	ENSMUSG00000023980	Taf8	AW260255|Tbn	TATA-box binding protein associated factor 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94558032-2	chr10	94557932	94558132	+	768.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359760, intron 1 of 3)	intron (NM_001359760, intron 1 of 3)	7112.0	NM_001359760	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-36708599-4	chr15	36708497	36708697	+	993.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR41|LTR|ERVL	82335.0	NM_001253807	22631.0	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118059028-2	chr11	118058928	118059128	+	714.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001167746, intron 55 of 80)	intron (NM_001167746, intron 55 of 80)	56758.0	NR_105898	102466768.0		NR_105898	ENSMUSG00000098958	Mir6933	Gm27856|mmu-mir-6933	microRNA 6933	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140621227-2	chr5	140621127	140621327	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_175274, exon 14 of 14)	3' UTR (NM_175274, exon 14 of 14)	13886.0	NM_008494	16848.0	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-170854387-3	chr1	170854279	170854479	+	783.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081304, intron 2 of 15)	RMER17A|LTR|ERVK	13392.0	NM_001081304	226641.0	Mm.377046	NM_001081304	ENSMUSG00000026663	Atf6	9130025P16Rik|9630036G24|AA789574|Atf6alpha|ESTM49	activating transcription factor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-84106200-2	chr6	84106100	84106300	+	576.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077694, intron 22 of 54)	intron (NM_001077694, intron 22 of 54)	86814.0	NM_021469	26903.0	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-115088395-2	chr9	115088295	115088495	+	802.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_148958, intron 1 of 9)	MER20|DNA|hAT-Charlie	21116.0	NM_148958	74486.0	Mm.458474	NM_148958	ENSMUSG00000040875	Osbpl10	4933433D06Rik|C820004B04Rik|OPR-10|ORP-10	oxysterol binding protein-like 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-155386945-2	chr2	155386829	155387029	+	548.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_178111, exon 4 of 4)	3' UTR (NM_178111, exon 4 of 4)	5073.0	NM_178111	68728.0	Mm.293605	NM_178111	ENSMUSG00000038375	Trp53inp2	1110029F20Rik|Tp53inp2	transformation related protein 53 inducible nuclear protein 2	protein-coding	1.01585279507969	0.852420923915523	0.644166296338696	1.28736593341391	1.02517801235786	1.02627110179003	0.646207556350059	1.29558830456127	0.218181219251733	0.883118455723596	1
Merged-chr4-58553309-4	chr4	58553219	58553419	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172989)	promoter-TSS (NM_172989)	-26.0	NM_172989	14745.0	Mm.4772	NM_010336	ENSMUSG00000038668	Lpar1	AI326300|Edg2|Gpcr26|Kdt2|lpA1|vzg-1	lysophosphatidic acid receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16286347-4	chr7	16286240	16286440	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001136471, intron 1 of 13)	CpG	455.0	NM_001136471	243846.0	Mm.482401	NM_172297	ENSMUSG00000041375	Ccdc9	2600011L02Rik	coiled-coil domain containing 9	protein-coding	-0.862030634104754	-0.846340151604894	-0.851500953857566	-0.855415204408448	-0.861037010143218	-0.845072134051678	0.297607450125457	-0.854727637484263	3.74638014297664	0.190525819776624	1
Merged-chr9-63135029-2	chr9	63134929	63135129	+	729.416626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11951.0	NM_172446	207667.0	Mm.36349	NM_172446	ENSMUSG00000022245	Skor1	AV273001|C230094B15Rik|Corl1|Lbxcor1	SKI family transcriptional corepressor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139389310-2	chr5	139389210	139389410	+	644.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001038703)	promoter-TSS (NM_001038703)	-594.0	NM_001038703	80290.0	Mm.270003	NM_030258	ENSMUSG00000044197	Gpr146	BC003323|D830046C22Rik|PGR8	G protein-coupled receptor 146	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-83441163-4	chr9	83441054	83441254	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027448)	promoter-TSS (NM_027448)	-27.0	NM_029434	75782.0	Mm.199698	NM_027448	ENSMUSG00000032258	Lca5	4930431B11Rik|5730406O13Rik|AV274874|ORF64	Leber congenital amaurosis 5 (human)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-84706701-1	chr12	84706601	84706801	+	547.0	f0_balb.idr	Intergenic	Intergenic	-7894.0	NM_001033334	627191.0	Mm.152484	NM_001033334	ENSMUSG00000071234	Syndig1l	DSPC1|Gm261|SynDIG2|Tmem90a	synapse differentiation inducing 1 like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-32163025-1	chr4	32162925	32163125	+	862.0	f0_balb.idr	Intergenic	Intergenic	198918.0	NM_172688	26409.0	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding	1.70354269531585	3.14630888793832	2.44003594401887	2.63822291591288	3.13569490332052	3.16945541128438	3.64908510483902	2.96943264569285	1.22690080920873	0.083583667107911	0.442949133374875
Merged-chr8-116439121-2	chr8	116439021	116439221	+	835.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65894.0	NM_029297	75465.0	Mm.23114	NM_029297	ENSMUSG00000034467	Dynlrb2	1700009A04Rik|DNLC2B|Dncl2b	dynein light chain roadblock-type 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-56272473-4	chr9	56272373	56272573	+	978.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172924, intron 3 of 6)	intron (NM_172924, intron 3 of 6)	-111403.0	NM_019793	56434.0	Mm.28484	NM_019793	ENSMUSG00000032324	Tspan3	1700055K04Rik|TM4-A|Tm4sf8	tetraspanin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-100917562-3	chr5	100917473	100917673	+	818.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	71344.0	NM_172715	231510.0	Mm.271911	NM_172715	ENSMUSG00000029314	Gpat3	1-AGPAT|1-AGPAT 9|4933407I02Rik|4933408F15|A230097K15Rik|Agpat9|GPAT-3|mGPAT3	glycerol-3-phosphate acyltransferase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-92375371-4	chr2	92375260	92375460	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_145122, exon 1 of 11)	5' UTR (NM_145122, exon 1 of 11)	121.0	NM_145122	18633.0	Mm.202782	NM_145122	ENSMUSG00000027222	Pex16	-	peroxisomal biogenesis factor 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-85520385-2	chr11	85520285	85520485	+	651.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_138681, intron 16 of 25)	intron (NM_138681, intron 16 of 25)	167221.0	NM_001166643	192197.0	Mm.209989	NM_138681	ENSMUSG00000059439	Bcas3	1500019F07Rik|2610028P08Rik|AU021018|BC028339|K20D4|rudhira	breast carcinoma amplified sequence 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-4045427-2	chr18	4045327	4045527	+	772.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-120405.0	NM_026092	67328.0	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-46087132-4	chr4	46087063	46087263	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021883, intron 4 of 9)	intron (NM_021883, intron 4 of 9)	47941.0	NM_021883	21916.0	Mm.249594	NM_021883	ENSMUSG00000028328	Tmod1	E-Tmod|Tmod	tropomodulin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-25482026-2	chr14	25481926	25482126	+	588.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	B4A|SINE|B4	22841.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105607960-4	chr8	105607861	105608061	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081241, intron 1 of 21)	intron (NM_001081241, intron 1 of 21)	2732.0	NM_001081241	75687.0	Mm.41261	NM_001081241	ENSMUSG00000038604	Ripor1	2310066E14Rik|AI837433|Fam65a	RHO family interacting cell polarization regulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-57518584-4	chr11	57518461	57518661	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001168668)	promoter-TSS (NM_001168668)	83.0	NM_001168667	67726.0	Mm.25632	NM_026342	ENSMUSG00000020523	Fam114a2	1810073G14Rik|9030624B09Rik	family with sequence similarity 114, member A2	protein-coding	0.212112246470073	0.229641644387982	0.769185357047686	0.730680757622384	0.473446268614662	0.230941302931884	0.543415595495087	0.379296109861528	-0.731772278839586	0.694857969352967	1
Merged-chr14-33215849-2	chr14	33215749	33215949	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153800)	promoter-TSS (NM_153800)	-974.0	NM_153800	239027.0	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-121589617-3	chr14	121589536	121589736	+	871.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081039, intron 38 of 53)	intron (NM_001081039, intron 38 of 53)	-84382.0	NM_053079	56643.0	Mm.155618	NM_053079	ENSMUSG00000025557	Slc15a1	D630032F02|PECT1|PEPT1	solute carrier family 15 (oligopeptide transporter), member 1	protein-coding	3.02142328873848	3.47670806132731	3.71759849517629	3.88822702344051	3.12875259011966	2.68860892168385	2.59564540797423	3.01198433773582	-1.12956084832128	0.0600470827936812	0.363005491782963
Merged-chr6-121224084-4	chr6	121223988	121224188	+	939.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017379, intron 4 of 4)	intron (NM_017379, intron 4 of 4)	13354.0	NM_017379	53857.0	Mm.32884	NM_017379	ENSMUSG00000030137	Tuba8	-	tubulin, alpha 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80590407-4	chr10	80590304	80590504	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145421)	promoter-TSS (NM_145421)	-63.0	NM_145421	216169.0	Mm.29802	NM_145421	ENSMUSG00000003346	Abhd17a	1700013O15Rik|BC005632|D10Bwg1364e|Fam108a	abhydrolase domain containing 17A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-31102750-2	chr3	31102650	31102850	+	645.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039090, intron 2 of 6)	intron (NM_001039090, intron 2 of 6)	7692.0	NM_001271772	20482.0	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-72488802-3	chr11	72488651	72488851	+	763.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153060, intron 1 of 12)	intron (NM_153060, intron 1 of 12)	1169.0	NM_153060	216892.0	Mm.212812	NM_153060	ENSMUSG00000040447	Spns2	-	spinster homolog 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64241136-3	chr5	64241022	64241222	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 1 of 18)	intron (NM_001289514, intron 1 of 18)	10765.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	2.59476118668697	2.79220570985995	3.17938151372546	2.03065329271438	2.80285961792036	2.68193847795181	3.12154557992403	3.25325953287926	0.511094318972759	0.466888645825358	0.923362083397688
Merged-chr11-46848444-6	chr11	46848397	46848597	+	832.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37698.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	1.61988020754858	1.24652310218242	1.85535232547314	1.19473179721847	1.63339695639232	1.25306384071824	1.03727626511825	2.09163649659588	0.283460997045516	0.816755390281769	0.998431161219273
Merged-chr6-29217857-4	chr6	29217770	29217970	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-1506.0	NM_001302934	23917.0	Mm.260707	NM_011829	ENSMUSG00000003500	Impdh1	B930086D20Rik|IMPDH-I	inosine monophosphate dehydrogenase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-55317411-2	chr13	55317311	55317511	+	622.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008739, exon 23 of 23)	3' UTR (NM_008739, exon 23 of 23)	4569.0	NM_009000	19336.0	Mm.220923	NM_009000	ENSMUSG00000034789	Rab24	6530406O07Rik	RAB24, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-8537456-2	chr4	8537356	8537556	+	887.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021518, intron 1 of 7)	intron (NM_021518, intron 1 of 7)	1812.0	NM_021518	59021.0	Mm.397471	NM_021518	ENSMUSG00000047187	Rab2a	9330148M11Rik|C80220|Rab2	RAB2A, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-96794446-4	chr5	96794342	96794542	+	902.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013470, intron 1 of 12)	intron (NM_013470, intron 1 of 12)	1057.0	NM_013470	11745.0	Mm.7214	NM_013470	ENSMUSG00000029484	Anxa3	Anx3	annexin A3	protein-coding	3.5288022008011	4.7581386859187	3.96653397249943	3.64662449628154	3.55874221244436	3.31995064690462	4.64955694592717	3.41146019868763	-0.280312817275058	0.603142253560988	0.973565005745828
Merged-chr4-133886408-2	chr4	133886347	133886547	+	693.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009097, intron 1 of 21)	intron (NM_009097, intron 1 of 21)	1350.0	NM_001285505	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	-0.913095416163127	-0.562167477159861	-0.73712182816202	-0.617224922758775	-0.912597795911164	-0.897443017101675	-0.907128548479758	-0.90938693054569	-2.83241474298219	0.319818884590034	1
Merged-chr13-110526755-2	chr13	110526655	110526855	+	616.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	131711.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171240162-2	chr1	171240060	171240260	+	865.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153064, intron 3 of 12)	intron (NM_153064, intron 3 of 12)	-5811.0	NM_010185	14127.0	Mm.22673	NM_010185	ENSMUSG00000058715	Fcer1g	AI573376|CD23|FcR-gamma|FcR[g]|FcRgamma|Fce1g|FcepsilonRI|Ly-50	Fc receptor, IgE, high affinity I, gamma polypeptide	protein-coding	2.90523671199381	2.38444283584863	3.68897855582805	2.53602661411561	3.3376499788206	2.72327749500722	3.08163293026538	2.54936159714947	-0.049067910572221	0.94409747816708	0.998431161219273
Merged-chr4-141538854-4	chr4	141538751	141538951	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019763)	promoter-TSS (NM_019763)	-254.0	NM_019763	56381.0	Mm.299906	NM_019763	ENSMUSG00000040761	Spen	Mint|mKIAA0929	spen family transcription repressor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-69368321-2	chr9	69368221	69368421	+	855.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289916, intron 4 of 9)	intron (NM_001289916, intron 4 of 9)	-4074.0	NR_136934	102642202.0	Mm.415363	NR_136934	ENSMUSG00000086648	Gm15511	-	predicted gene 15511	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32078717-4	chr2	32078634	32078834	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151493, intron 2 of 5)	intron (NR_151493, intron 2 of 5)	4971.0	NM_175511	241303.0	Mm.250441	NM_175511	ENSMUSG00000050592	Fam78a	A130092J06Rik	family with sequence similarity 78, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-96791999-3	chr5	96791923	96792123	+	855.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1362.0	NM_013470	11745.0	Mm.7214	NM_013470	ENSMUSG00000029484	Anxa3	Anx3	annexin A3	protein-coding	0.600977238406321	0.504527772543555	0.159023435521518	0.154778822638038	0.515767155838805	0.165782639263417	0.715746388985321	0.155519740768128	0.287755350948454	0.886578023333656	1
Merged-chr7-130709649-1	chr7	130709549	130709749	+	594.0	f0_balb.idr	intron (NM_021314, intron 1 of 17)	intron (NM_021314, intron 1 of 17)	17093.0	NM_021314	57752.0	Mm.86322	NM_021314	ENSMUSG00000030852	Tacc2	mKIAA4180	transforming, acidic coiled-coil containing protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-96638330-4	chr15	96638236	96638436	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166458, intron 1 of 15)	intron (NM_001166458, intron 1 of 15)	3626.0	NM_134086	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-21347314-2	chr19	21347214	21347414	+	758.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR17|LTR|ERVK	75036.0	NM_009551	22682.0	Mm.292405	NM_009551	ENSMUSG00000024750	Zfand5	2310057A04Rik|5830475F03Rik|AA415485|Za20d2|Zfp216	zinc finger, AN1-type domain 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-66816128-4	chr1	66816019	66816219	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357156, intron 1 of 14)	MIR|SINE|MIR	1476.0	NM_177645	68691.0	Mm.240912	NM_177645	ENSMUSG00000026004	Kansl1l	1110028C15Rik|1190030G24|AI427598|C430010P07Rik|mKIAA4189	KAT8 regulatory NSL complex subunit 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-9426901-1	chr14	9426801	9427001	+	707.0	f0_balb.idr	Intergenic	Intergenic	-457194.0	NR_030680	100042415.0	Mm.235938	NR_030680	ENSMUSG00000089686	Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	0.715011800604448	0.296701046185927	0.286868060886136	0.47691026332188	0.446105846875373	1.52019142493767	0.681304577224846	0.280526083552549	1.97955218773876	0.255737934022432	1
Merged-chr4-128980542-4	chr4	128980461	128980661	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER31A|LTR|ERV1	-12663.0	NM_016895	11637.0	Mm.29460	NM_016895	ENSMUSG00000028792	Ak2	Ak-2|D4Ertd220e	adenylate kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81088564-4	chr10	81088469	81088669	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_145365, exon 8 of 12)	exon (NM_145365, exon 8 of 12)	10303.0	NM_145365	208677.0	Mm.294693	NM_145365	ENSMUSG00000035041	Creb3l3	BC010786|CREB-H|D10Bur1e	cAMP responsive element binding protein 3-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-60607682-2	chr3	60607582	60607782	+	628.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253711, intron 3 of 7)	intron (NM_001253711, intron 3 of 7)	106503.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-47314378-5	chr19	47314230	47314430	+	690.733337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008018, intron 7 of 14)	CpG-7627	-40741.0	NR_105961	102466782.0		NR_105961	ENSMUSG00000098786	Mir6995	Gm27576|mmu-mir-6995	microRNA 6995	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-11118175-3	chr8	11118067	11118267	+	838.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-109737.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-95807168-2	chr15	95807068	95807268	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 1 of 19)	intron (NM_175344, intron 1 of 19)	16325.0	NM_001253813	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129311763-4	chr2	129311648	129311848	+	945.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1776.0	NM_010554	16175.0	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	0.573740777889944	0.906158671430145	0.345587820073042	0.615918332907507	0.464932654511213	0.808349666673238	0.508225065273387	0.342224160126218	-0.589732458610739	0.72967893391875	1
Merged-chr10-24961286-2	chr10	24961186	24961386	+	582.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33816.0	NM_007482	11846.0	Mm.154144	NM_007482	ENSMUSG00000019987	Arg1	AI|AI256583|Arg-1|PGIF	arginase, liver	protein-coding	-1.56355737717652	-1.81244775989375	-1.82128546162293	-1.82854501295842	-1.83962066705452	-1.81053259306168	-1.81928479966835	-1.82724555674025	-1.28500227969968	0.715751224811686	1
Merged-chr11-98378143-2	chr11	98378043	98378243	+	614.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021547, intron 9 of 14)	intron (NM_021547, intron 9 of 14)	-5668.0	NM_011540	21393.0	Mm.10762	NM_011540	ENSMUSG00000007877	Tcap	AI503981|AJ223855	titin-cap	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-61594129-1	chr2	61594029	61594229	+	1000.0	f0_c57.idr	non-coding (NR_149323, exon 2 of 10)	non-coding (NR_149323, exon 2 of 10)	1032.0	NR_149323	21353.0	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-155564977-4	chr1	155564867	155565067	+	922.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026683, intron 2 of 3)	intron (NM_026683, intron 2 of 3)	6847.0	NM_028250	72482.0	Mm.288249	NM_026683	ENSMUSG00000033701	Acbd6	0610010G04Rik|2610100E10Rik	acyl-Coenzyme A binding domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-88989688-3	chr11	88989626	88989826	+	794.988892	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016706, intron 6 of 6)	intron (NM_016706, intron 6 of 6)	-9677.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	0.791187075043413	0.401210602751132	1.01446117169104	0.385132679372871	0.375086403799217	1.30147914093133	0.394172345820694	0.861401460969365	0.610094696259604	0.735040497440678	1
Merged-chr4-8916408-3	chr4	8916287	8916487	+	827.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	165063.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-104447892-4	chr7	104447809	104448009	+	856.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009099, intron 1 of 7)	Lx|LINE|L1	-1784.0	NM_001357467	20128.0	Mm.295578	NM_009099	ENSMUSG00000030921	Trim30a	Rpt-1|Rpt1|Trim30	tripartite motif-containing 30A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-32819280-1	chr16	32819180	32819380	+	760.0	f1_balb.idr	Intergenic	Intergenic	-8834.0	NM_001256309	381043.0	Mm.303864	NM_001256309	ENSMUSG00000094430	Smbd1	Gm1743|Gm933	somatomedin B domain containing 1	protein-coding	-2.18138529563533	-2.15523716995652	-2.1631445789866	-2.16963996020037	-2.05513010215571	-2.15352360143315	-2.16135451490766	-2.16847729006863	0.759018020146679	0.829933115115583	1
Merged-chr8-39153017-2	chr8	39152917	39153117	+	582.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357305, intron 7 of 8)	(CACAG)n|Simple_repeat|Simple_repeat	-144963.0	NR_044988	621335.0	Mm.208080	NR_044988	ENSMUSG00000109827	Gm6213	EG621335	predicted gene 6213	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139375790-4	chr5	139375661	139375861	+	897.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028469, intron 2 of 4)	MTE2a|LTR|ERVL-MaLR	-1936.0	NM_001362206	80290.0	Mm.270003	NM_030258	ENSMUSG00000044197	Gpr146	BC003323|D830046C22Rik|PGR8	G protein-coupled receptor 146	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45523000-6	chr7	45522845	45523045	+	949.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008807)	TTS (NM_008807)	3323.0	NM_008654	17872.0	Mm.4048	NM_008654	ENSMUSG00000040435	Ppp1r15a	9630030H21|Gadd34|Myd116	protein phosphatase 1, regulatory (inhibitor) subunit 15A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99407773-4	chr7	99407667	99407867	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362166, intron 3 of 18)	intron (NM_001362166, intron 3 of 18)	26249.0	NM_001362166	233552.0	Mm.286317	NM_201352	ENSMUSG00000035314	Gdpd5	BC024955|Gde2	glycerophosphodiester phosphodiesterase domain containing 5	protein-coding	3.37347720315284	4.223634878349	4.08878553467346	4.84067906860381	3.75160228005265	2.48081077310008	3.92569991966797	4.05601137897977	-0.751349672044327	0.165771547247998	0.631138255938698
Merged-chr10-9889825-2	chr10	9889725	9889925	+	890.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081344, intron 2 of 25)	intron (NM_001081344, intron 2 of 25)	11215.0	NM_001081344	78808.0	Mm.331751	NM_030191	ENSMUSG00000019790	Stxbp5	0710001E20Rik|4930565N16Rik|AW742610|LGL3|mKIAA1006	syntaxin binding protein 5 (tomosyn)	protein-coding	1.77124050214782	1.07938477228956	1.32629345174007	1.67424278859451	0.600838233729764	0.645946681097237	0.631630023420272	0.619146586872577	-4.95177289044148	0.00169688823331304	0.0296852651485555
Merged-chr5-21187009-4	chr5	21186904	21187104	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153365, intron 1 of 26)	intron (NR_153365, intron 1 of 26)	737.0	NM_001359877	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-61494565-3	chr2	61494495	61494695	+	736.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-83991.0	NM_011529	21353.0	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-134531843-4	chr5	134531748	134531948	+	976.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039162, intron 2 of 15)	intron (NM_001039162, intron 2 of 15)	20586.0	NM_001039162	269713.0	Mm.255138	NM_009990	ENSMUSG00000063146	Clip2	B230327O20|CLIP-115|Clip1|Cyln2|WSCR4|mKIAA0291|wbscr4	CAP-GLY domain containing linker protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-113542633-4	chr13	113542574	113542774	+	846.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39830.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-110464114-4	chr11	110463999	110464199	+	933.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356352, intron 1 of 11)	MTE2a|LTR|ERVL-MaLR	-14416.0	NM_001356347	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-99479430-4	chr9	99479351	99479551	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028768, exon 22 of 22)	3' UTR (NM_028768, exon 22 of 22)	9030.0	NR_028123	69797.0	Mm.307159	NR_028123	ENSMUSG00000046242	1600029I14Rik	-	RIKEN cDNA 1600029I14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-177799094-2	chr1	177798994	177799194	+	600.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A2|LTR|ERVL-MaLR	-2585.0	NM_007422	11566.0	Mm.338021	NM_007422	ENSMUSG00000015961	Adss	AI314886|AS|Adss2	adenylosuccinate synthetase, non muscle	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131566330-4	chr1	131566224	131566424	+	939.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR46B|LTR|ERVK	-32790.0	NM_011924	26361.0	Mm.89986	NM_011924	ENSMUSG00000026432	Avpr1b	AVPR3|V3/V1b|VIBR|VPR3	arginine vasopressin receptor 1B	protein-coding	3.72917500193054	4.19356609048057	5.05521466356009	4.82861411392111	4.124862880423	3.98671657142092	4.98496345585462	5.16770615583662	0.147953479408904	0.740759014831246	0.998431161219273
Merged-chr12-26438978-3	chr12	26438814	26439014	+	974.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD-int|LTR|ERVL-MaLR	17538.0	NM_021384	58185.0	Mm.24045	NM_021384	ENSMUSG00000020641	Rsad2	2510004L01Rik|Vig1|cig5	radical S-adenosyl methionine domain containing 2	protein-coding	1.78317650046134	3.13334384759621	3.38265776960635	2.39810118930858	5.25336797231167	5.6980899304315	5.12393347391632	4.82261177547767	3.32976953378362	3.39358542540285e-11	8.14324758679667e-09
Merged-chr11-13990062-2	chr11	13989962	13990162	+	583.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2A|LINE|L1	188979.0	NR_131011	75280.0	Mm.108492	NR_131011	ENSMUSG00000085452	4930554G24Rik	-	RIKEN cDNA 4930554G24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-95799807-4	chr15	95799698	95799898	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 1 of 19)	intron (NM_175344, intron 1 of 19)	8955.0	NM_001253813	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129068283-4	chr4	129068191	129068391	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029219, intron 1 of 8)	intron (NM_029219, intron 1 of 8)	10020.0	NM_029219	75234.0	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-35038243-2	chr9	35038143	35038343	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-78485.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-193859001-4	chr1	193858899	193859099	+	943.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-351469.0	NR_029592	387201.0		NR_029592	ENSMUSG00000065533	Mir205	Mirn205|mir-205|mmu-mir-205	microRNA 205	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-40344927-3	chr9	40344827	40345027	+	899.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357617, intron 2 of 20)	intron (NM_001357617, intron 2 of 20)	1318.0	NM_001357623	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-12087190-4	chr4	12087093	12087293	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110955, intron 1 of 28)	intron (NR_110955, intron 1 of 28)	764.0	NM_177861	329795.0	Mm.475125	NM_177861	ENSMUSG00000049488	Tmem67	5330408M12Rik|B230117O07|b2b1163.1Clo|b2b1291.1Clo	transmembrane protein 67	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-75983004-3	chr16	75982904	75983104	+	712.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-17780.0	NR_155447	102632240.0	Mm.417237	NR_155447	ENSMUSG00000087214	Gm15555	-	predicted gene 15555	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-12760413-4	chr18	12760324	12760524	+	929.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252490, intron 10 of 13)	intron (NM_001252490, intron 10 of 13)	19069.0	NM_027687	71132.0	Mm.179740	NM_027687	ENSMUSG00000024430	Cabyr	1700016C01Rik|4933421A18Rik|CBP86|FSP-2	calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-61420589-2	chr10	61420489	61420689	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013611, intron 1 of 2)	intron (NM_013611, intron 1 of 2)	2617.0	NM_013611	18119.0	Mm.57195	NM_013611	ENSMUSG00000037171	Nodal	Tg.413d	nodal	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-84202800-4	chr12	84202700	84202900	+	879.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163501, intron 1 of 12)	Tigger16a|DNA|TcMar-Tigger	-8785.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-43351443-2	chr11	43351343	43351543	+	936.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23018.0	NR_029558	387164.0		NR_029558	ENSMUSG00000065601	Mir146	Mirn146|miR-146a|mmu-mir-146	microRNA 146	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-45251844-3	chr9	45251746	45251946	+	942.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14861.0	NR_106054	102466803.0		NR_106054	ENSMUSG00000098361	Mir7086	Gm27643|mmu-mir-7086	microRNA 7086	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70801092-2	chr11	70800992	70801192	+	733.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001045526, intron 1 of 4)	intron (NM_001045526, intron 1 of 4)	11469.0	NM_001045526	327957.0	Mm.164325	NM_001045526	ENSMUSG00000057135	Scimp	A430084P05Rik	SLP adaptor and CSK interacting membrane protein	protein-coding	-2.05752322593321	-2.15521190974092	-2.16307242109104	-2.16952927915413	-2.17938029103484	-2.15350850414045	-2.16129297361887	-2.16837350464794	-0.683654500252594	0.846597994014493	1
Merged-chr2-158147198-2	chr2	158147098	158147298	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009373)	promoter-TSS (NM_009373)	-806.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80774772-4	chr10	80774676	80774876	+	905.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199322, intron 7 of 27)	intron (NM_199322, intron 7 of 27)	19573.0	NM_199322	208266.0	Mm.152371	NM_199322	ENSMUSG00000061589	Dot1l	A630076O07|AW907654|Dot1|KMT4|mDot1	DOT1-like, histone H3 methyltransferase (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47442352-2	chr17	47442242	47442442	+	587.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145489, intron 1 of 4)	intron (NM_145489, intron 1 of 4)	-4967.0	NM_029296	75462.0	Mm.46129	NM_029296	ENSMUSG00000047150	1700001C19Rik	-	RIKEN cDNA 1700001C19 gene	protein-coding	0.835764141471252	0.996650948174509	0.371036868275794	0.365440150215228	0.846246433870105	0.379909322982502	0.372635257341899	0.912126759032101	-0.120427568426759	0.948220732157979	1
Merged-chr13-60658280-4	chr13	60658242	60658442	+	768.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	L1_Mus1|LINE|L1	56131.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	0.470019940760276	0.0670533547896631	0.0473254397019891	-0.119318935708228	0.126765049527205	-0.11092136749046	0.051681602438117	-0.118754925299242	-1.34202565575295	0.526017334174442	1
Merged-chr10-80567926-2	chr10	80567826	80568026	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_078477, exon 2 of 2)	3' UTR (NM_078477, exon 2 of 2)	-6366.0	NM_025852	66932.0	Mm.1116	NM_025852	ENSMUSG00000047417	Rexo1	1700021P10Rik|2610511M11Rik|AW050347|EloA-BP1|Rex1|Tceb3bp1	REX1, RNA exonuclease 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-17366289-3	chr10	17366181	17366381	+	669.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-270499.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-53419899-2	chr15	53419799	53419999	+	990.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73716.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135460331-4	chr5	135460229	135460429	+	936.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146001, intron 2 of 30)	intron (NM_146001, intron 2 of 30)	-65783.0	NM_148932	107939.0	Mm.28399	NM_148932	ENSMUSG00000053293	Pom121	2610027A18Rik|C80273|mKIAA0618	nuclear pore membrane protein 121	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-34624162-4	chr18	34624068	34624268	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166406)	promoter-TSS (NM_001166406)	-456.0	NM_001166407	19348.0	Mm.258846	NM_009004	ENSMUSG00000003779	Kif20a	AA415432|Rab6kifl	kinesin family member 20A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-32900821-2	chr13	32900721	32900921	+	783.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER70-int|LTR|ERVL	-2681.0	NM_173051	380839.0	Mm.250802	NM_173051	ENSMUSG00000079049	Serpinb1c	EIC|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 1c	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97280200-1	chr6	97280100	97280300	+	552.0	f1_c57bl6.idr	Intergenic	Intergenic	-27420.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-134339292-1	chr3	134339192	134339392	+	668.0	f0_balb.idr	Intergenic	Intergenic	84343.0	NR_040600	75208.0	Mm.84580	NR_040600	ENSMUSG00000105765	4930539C22Rik	-	RIKEN cDNA 4930539C22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111439129-2	chr12	111439029	111439229	+	716.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-3532.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-112679843-2	chr12	112679743	112679943	+	602.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001100460, exon 2 of 2)	exon (NM_001100460, exon 2 of 2)	1003.0	NM_001100460	382639.0	Mm.11350	NM_001100460	ENSMUSG00000037638	Zbtb42	EG382639|Gm5188|simiRP58	zinc finger and BTB domain containing 42	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-36689629-2	chr3	36689529	36689729	+	885.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019510, intron 1 of 11)	CpG	538.0	NM_019510	22065.0	Mm.74363	NM_019510	ENSMUSG00000027716	Trpc3	Mwk|Trcp3|Trp3|Trrp3	transient receptor potential cation channel, subfamily C, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-144243801-2	chr2	144243701	144243901	+	565.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22401.0	NR_030762	100313519.0	Mm.453538	NR_030762	ENSMUSG00000077714	Snord17	MBI-43	small nucleolar RNA, C/D box 17	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-32793918-3	chr12	32793835	32794035	+	810.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26400.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-3170984-1	chr11	3170884	3171084	+	1000.0	f0_balb.idr	intron (NM_030207, intron 6 of 32)	RSINE1|SINE|B4	22479.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28233596-4	chr17	28233488	28233688	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011145, intron 1 of 7)	intron (NM_011145, intron 1 of 7)	834.0	NM_011145	19015.0	Mm.328914	NM_011145	ENSMUSG00000002250	Ppard	NUC-1|NUC1|Nr1c2|PPAR-beta|PPAR-delta|PPAR[b]|PPARdelta|Pparb|Pparb/d	peroxisome proliferator activator receptor delta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-58860866-4	chr1	58860756	58860956	+	935.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58354.0	NM_001277926	12370.0	Mm.336851	NM_009812	ENSMUSG00000026029	Casp8	CASP-8|FLICE|MACH|Mch5	caspase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-87294891-2	chr17	87294791	87294991	+	946.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028639, intron 3 of 19)	(TG)n|Simple_repeat|Simple_repeat	12005.0	NM_028639	225049.0	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-45047550-4	chr2	45047439	45047639	+	981.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355291, intron 2 of 9)	intron (NM_001355291, intron 2 of 9)	-24362.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-20767383-3	chr5	20767282	20767482	+	889.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172992, intron 14 of 17)	intron (NM_172992, intron 14 of 17)	114742.0	NM_172992	68770.0	Mm.86410	NM_172992	ENSMUSG00000039987	Phtf2	1110054G21Rik|9530062N20Rik|AI447096|C77923	putative homeodomain transcription factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-120818851-2	chr6	120818743	120818943	+	999.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007510, intron 1 of 8)	intron (NM_007510, intron 1 of 8)	3855.0	NM_007510	11973.0	Mm.29045	NM_007510	ENSMUSG00000019210	Atp6v1e1	2410029D23Rik|Atp6e|Atp6e2|Atp6v1e|D6Ertd385e|Vma4|p31	ATPase, H+ transporting, lysosomal V1 subunit E1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-73593822-2	chr7	73593722	73593922	+	834.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	IMPB_01|Satellite|Satellite	-35427.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80383360-2	chr10	80383260	80383460	+	725.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198615, intron 1 of 1)	intron (NM_198615, intron 1 of 1)	4291.0	NM_198615	237400.0	Mm.268389	NM_198615	ENSMUSG00000048696	Mex3d	BC059858|Rkhd1	mex3 RNA binding family member D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-27402885-1	chr7	27402785	27402985	+	566.0	f0_balb.idr	exon (NM_032610, exon 17 of 36)	exon (NM_032610, exon 17 of 36)	-6332.0	NM_001199236	80297.0	Mm.459123	NM_032610	ENSMUSG00000011751	Sptbn4	1700022P15Rik|5830426A08Rik|ROSA62|SpbIV|Spnb4|dyn|lnd|nmf261|nmf379|qv	spectrin beta, non-erythrocytic 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-38352926-3	chr19	38352836	38353036	+	778.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43044.0	NM_175507	240660.0	Mm.262085	NM_175507	ENSMUSG00000044026	Slc35g1	AA590464|D330039I19Rik|Tmem20	solute carrier family 35, member G1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-181411269-4	chr2	181411169	181411369	+	899.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028125, exon 3 of 3)	3' UTR (NM_028125, exon 3 of 3)	13119.0	NM_027656	72147.0	Mm.486504	NM_027656	ENSMUSG00000027583	Zbtb46	2610019F01Rik|4933406L05Rik|BZEL|Btbd4	zinc finger and BTB domain containing 46	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-76130202-3	chr16	76130075	76130275	+	883.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040575, intron 1 of 2)	intron (NR_040575, intron 1 of 2)	7562.0	NR_040575	78215.0	Mm.243885	NR_040575		4930578N18Rik	-	RIKEN cDNA 4930578N18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90745913-2	chr2	90745813	90746013	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_018828, intron 1 of 16)	CpG	543.0	NM_018828	55935.0	Mm.489638	NM_018828	ENSMUSG00000008200	Fnbp4	FBP30|Fnbp30|mKIAA1014	formin binding protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-82812531-4	chr18	82812428	82812628	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43369.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-50313388-2	chr11	50313288	50313488	+	555.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110500, intron 1 of 14)	intron (NM_001110500, intron 1 of 14)	12285.0	NM_001110499	12330.0	Mm.248827	NM_007597	ENSMUSG00000020368	Canx	1110069N15Rik|AI988026|Cnx|D11Ertd153e	calnexin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-68593593-4	chr14	68593474	68593674	+	935.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11502.0	NM_021475	58860.0	Mm.36742	NM_021475	ENSMUSG00000022057	Adamdec1	2210414L24Rik|AI574231|Dcsn	ADAM-like, decysin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96663805-4	chr3	96663764	96663964	+	799.145813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001302471, exon 30 of 30)	3' UTR (NM_001302471, exon 30 of 30)	-6267.0	NM_001356539	213121.0	Mm.39732	NM_001081139	ENSMUSG00000038354	Ankrd35	4732436F15Rik	ankyrin repeat domain 35	protein-coding	2.19150276792591	3.60669466928126	2.38484553166309	2.54841232199328	2.62035137338979	2.34206169888951	1.90984112603771	1.85044740834362	-1.20099937232307	0.147678809796542	0.597789138528913
Merged-chr4-151806876-3	chr4	151806781	151806981	+	656.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195565, intron 3 of 3)	intron (NM_001195565, intron 3 of 3)	54887.0	NM_001081557	100072.0	Mm.318846	NM_001081557	ENSMUSG00000014592	Camta1	1810059M14Rik|2310058O09Rik|AI316882|AW987475|mKIAA0833	calmodulin binding transcription activator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-73600361-4	chr13	73600251	73600451	+	922.2666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3651.0	NM_146047	218335.0	Mm.30099	NM_146047	ENSMUSG00000021610	Clptm1l	C130052I12Rik|Crr9	CLPTM1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-53088904-2	chr18	53088804	53089004	+	998.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-87388.0	NM_001357463	67804.0	Mm.252171	NM_026386	ENSMUSG00000034484	Snx2	0610030A03Rik	sorting nexin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120510853-4	chr11	120510750	120510950	+	974.19165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	19013.0	NM_013770	27376.0	Mm.3991	NM_013770	ENSMUSG00000025792	Slc25a10	Dic	solute carrier family 25 (mitochondrial carrier, dicarboxylate transporter), member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-129524038-2	chr7	129523938	129524138	+	969.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-67825.0	NM_172255	207425.0	Mm.229323	NM_172255	ENSMUSG00000042055	Wdr11	2900055P10Rik|AW489876|Brwd2|mKIAA1351	WD repeat domain 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-83145621-3	chr8	83145521	83145721	+	911.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-19731.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	2.01954494149293	2.80422705876624	2.47784573953485	2.27573318146711	3.05935896875524	2.27450103026992	3.01288987178935	2.92270791339527	0.891623518735164	0.23285410962243	0.727930149661469
Merged-chr16-21351504-4	chr16	21351394	21351594	+	918.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-18138.0	NR_131983	76222.0	Mm.86031	NR_131983		Magef1	6430590I03Rik	melanoma antigen family F, 1	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-33903032-3	chr8	33902921	33903121	+	642.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042675, intron 1 of 6)	intron (NM_001042675, intron 1 of 6)	26842.0	NM_019733	19663.0	Mm.323997	NM_019733	ENSMUSG00000031586	Rbpms	2010300K22Rik|2700019M19Rik|AU017537|RBP-MS|hermes	RNA binding protein gene with multiple splicing	protein-coding	-0.360771653240424	0.270384351898949	-0.351862754692475	-0.355212008626471	-0.212085009142596	0.158517979019125	-0.350905255877581	-0.354626918014843	-0.075457604362493	0.975810343503362	1
Merged-chr13-3825877-4	chr13	3825772	3825972	+	792.645813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11885.0	NM_020036	80796.0	Mm.21075	NM_020036	ENSMUSG00000033765	Calm4	2310037J09Rik|AI649108|DD112|Scarf	calmodulin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-4300464-3	chr7	4300398	4300598	+	828.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26309.0	NM_008848	18729.0	Mm.326531	NM_008848		Pira6	12M1|Pira10|p91B	paired-Ig-like receptor A6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-103470701-4	chr11	103470601	103470801	+	945.908325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4|LINE|L1	-58037.0	NM_183034	353047.0	Mm.18556	NM_183034	ENSMUSG00000034247	Plekhm1	AP162|B2|BC038943|D330036J23Rik	pleckstrin homology domain containing, family M (with RUN domain) member 1	protein-coding	-1.84354474832578	-1.81325489144778	-1.53416061964661	-1.82993901100912	-1.8414184563789	-1.81126990231468	-1.82034119297928	-1.82859217979378	-1.52252619601533	0.665276690233728	1
Merged-chr11-90390892-4	chr11	90390786	90390986	+	872.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172563)	promoter-TSS (NM_172563)	31.0	NM_172563	217082.0	Mm.158903	NM_172563	ENSMUSG00000003949	Hlf	E230015K02Rik	hepatic leukemia factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30072733-5	chr7	30072576	30072776	+	980.159973	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177889, intron 1 of 6)	CpG	147.0	NM_177889	330502.0	Mm.295906	NM_177889	ENSMUSG00000098022	Zfp82	A030010D05|Krab16|Mszf3|Zfp-82	zinc finger protein 82	protein-coding	4.44799255779574	4.28198922343484	4.95965793419095	3.75205237489561	4.1350608331909	4.49169123491065	4.1099323619451	4.11210920784548	-0.276183283525524	0.515982230708507	0.947402641287243
Merged-chr18-38890430-3	chr18	38890320	38890520	+	787.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010197, intron 1 of 3)	intron (NM_010197, intron 1 of 3)	-2036.0	NM_001033789	545253.0	Mm.244585	NM_001033789	ENSMUSG00000036452	Gm5820	EG545253	predicted gene 5820	protein-coding	1.89863267239264	1.12166039231097	1.08628567773705	1.75290766205734	0.816592630825837	0.875749580627152	2.18489793282088	1.24625553734937	-0.267608616646513	0.840297848489266	0.998431161219273
Merged-chr7-101297740-2	chr7	101297640	101297840	+	805.083374	f1_balb.idr|f1_c57bl6.idr	intron (NR_152152, intron 3 of 16)	MIR|SINE|MIR	4348.0	NM_001111111	73683.0	Mm.275744	NM_001111111	ENSMUSG00000047767	Atg16l2	2410118P20Rik	autophagy related 16-like 2 (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-76991873-1	chr14	76991773	76991973	+	714.0	f1_balb.idr	Intergenic	Intergenic	44744.0	NM_172488	210808.0	Mm.89278	NM_172488	ENSMUSG00000044350	Lacc1	9030625A04Rik	laccase domain containing 1	protein-coding	1.46801800057899	1.90545751444164	0.902923663686782	2.03328043159283	1.22146287580789	1.16904843355622	1.73985388390525	0.891411045109462	-1.19819906558492	0.349772097196256	0.850386723313101
Merged-chr5-3461655-4	chr5	3461545	3461745	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 4 of 7)	intron (NM_009873, intron 4 of 7)	-82188.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-72831981-2	chr12	72831881	72832081	+	572.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	70770.0	NM_008910	19042.0	Mm.261045	NM_008910	ENSMUSG00000021096	Ppm1a	2310003C21Rik|2900017D14Rik|AI427932|AU017636|MMPa-2|MPPa-1	protein phosphatase 1A, magnesium dependent, alpha isoform	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-49745169-3	chr2	49745067	49745267	+	755.400024	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008449, intron 21 of 25)	intron (NM_008449, intron 21 of 25)	-42519.0	NM_027990	71897.0	Mm.41381	NM_027990	ENSMUSG00000026765	Lypd6b	2310010M24Rik|AW049525	LY6/PLAUR domain containing 6B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118290304-4	chr11	118290208	118290408	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033528)	promoter-TSS (NM_001033528)	-64.0	NM_001033528	72344.0	Mm.232293	NM_001033528	ENSMUSG00000033909	Usp36	2700002L06Rik|mKIAA1453	ubiquitin specific peptidase 36	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-101646069-2	chr4	101645969	101646169	+	806.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1714.0	NM_175036	230514.0	Mm.4756	NM_175036	ENSMUSG00000035212	Leprot	LEPR|OB-RGRP|Obrgrp|VPS55	leptin receptor overlapping transcript	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116412579-4	chr11	116412483	116412683	+	913.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027258, intron 1 of 18)	CpG	449.0	NM_027258	217340.0	Mm.426344	NM_027258	ENSMUSG00000052949	Rnf157	2610036E23Rik|A130073L17Rik|mKIAA1917	ring finger protein 157	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-72811767-2	chr11	72811667	72811867	+	551.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001045536, intron 1 of 54)	B1_Mus1|SINE|Alu	15541.0	NM_001045536	195018.0	Mm.272030	NM_001045536	ENSMUSG00000055670	Zzef1	8430405D05Rik|BC051585|C130099L13Rik|C85424|NSPA|mKIAA0399	zinc finger, ZZ-type with EF hand domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114983315-3	chr11	114983187	114983387	+	601.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_145437, exon 4 of 4)	3' UTR (NM_145437, exon 4 of 4)	6599.0	NM_145437	217305.0	Mm.275986	NM_145437	ENSMUSG00000034641	Cd300ld	4732429D16Rik|CLM5|Cd300ld1|LMIR4|MAIR-IV|clm-5	CD300 molecule like family member d	protein-coding	1.72152884782113	1.94760994399639	1.20152916358292	1.43133973338912	2.76922230193858	3.11496944975443	2.43355199957699	1.83109540842029	2.5071181138773	0.0099335481363844	0.108545273716157
Merged-chr10-61144663-2	chr10	61144563	61144763	+	614.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009163, intron 2 of 14)	AT_rich|Low_complexity|Low_complexity	3021.0	NM_009163	20397.0	Mm.412319	NM_009163	ENSMUSG00000020097	Sgpl1	AI428538|D10Xrf456|S1PL|Spl	sphingosine phosphate lyase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-156234027-2	chr4	156233927	156234127	+	816.666626	f1_balb.idr|f1_c57bl6.idr	exon (NM_198305, exon 2 of 12)	exon (NM_198305, exon 2 of 12)	830.0	NM_198305	231003.0	Mm.423038	NM_198305	ENSMUSG00000078485	Klhl17	AL022703|BC058738	kelch-like 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-75516013-2	chr10	75515913	75516113	+	795.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347201, intron 1 of 5)	intron (NM_001347201, intron 1 of 5)	1368.0	NM_175133	68778.0	Mm.29382	NM_175133	ENSMUSG00000033416	Gucd1	1110038D17Rik	guanylyl cyclase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-59809373-2	chr13	59809273	59809473	+	732.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153538, intron 9 of 27)	intron (NM_153538, intron 9 of 27)	13774.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97510010-2	chr6	97509910	97510110	+	715.133301	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	-22190.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-127553231-6	chr3	127553094	127553294	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_197997)	promoter-TSS (NM_197997)	155.0	NM_138593	28036.0	Mm.291032	NM_138593	ENSMUSG00000027968	Larp7	C330027G06Rik|D3Wsu161e	La ribonucleoprotein domain family, member 7	protein-coding	5.78347998703244	4.45183018675625	5.70178940504789	5.22338077103767	5.05455530663779	4.98364947307951	5.95560830762976	4.97821881662223	-0.0926664546464171	0.796833461394165	0.998431161219273
Merged-chr11-120319953-2	chr11	120319853	120320053	+	756.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	27460.0	NR_105900	102465564.0		NR_105900	ENSMUSG00000098955	Mir6935	Gm27344|mmu-mir-6935	microRNA 6935	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27283046-2	chr2	27282946	27283146	+	820.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_133905, intron 16 of 29)	intron (NR_133905, intron 16 of 29)	-35743.0	NM_138665	192166.0	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-30276989-2	chr4	30276889	30277089	+	608.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13A1|LTR|ERVK	-387607.0	NR_040655	75332.0	Mm.108636	NR_040655		4930556G01Rik	-	RIKEN cDNA 4930556G01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129364219-1	chr2	129364119	129364319	+	702.0	f1_balb.idr	TTS (NM_008361)	TTS (NM_008361)	-5683.0	NR_015474	329514.0	Mm.207315	NM_177848	ENSMUSG00000074805	Il1bos	9430083I22|Gm14047	interleukin 1 beta, opposite strand	ncRNA	2.35348991930507	2.37143099913889	2.76374066417655	2.86029144282612	3.07088970102286	2.6605311745678	2.57220787778989	1.45366985837629	-0.065789570998824	0.936958275822089	0.998431161219273
Merged-chr4-137843258-1	chr4	137843158	137843358	+	713.0	f1_c57bl6.idr	Intergenic	Intergenic	-18979.0	NM_199307	230857.0	Mm.401062	NM_199307	ENSMUSG00000057530	Ece1	AW322500|ECE-1|ECE-1a|ECE-1b|ECE-1d	endothelin converting enzyme 1	protein-coding	1.57499273141875	1.40923700705077	0.701325706561977	1.30570588978654	0.851501431041898	0.716724309660802	0.704119507492394	1.52083586669437	-1.1508298061542	0.444657621082262	0.912265842646861
Merged-chr3-9724358-3	chr3	9724266	9724466	+	799.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053182, intron 2 of 7)	intron (NM_053182, intron 2 of 7)	109313.0	NM_053182	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-3720475-3	chr7	3720374	3720574	+	706.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011095)	promoter-TSS (NM_011095)	-92.0	NM_011095	18733.0	Mm.326531	NM_011095	ENSMUSG00000058818	Pirb	Gp91|LIR-3|Lilrb3|PIR-B	paired Ig-like receptor B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-138856747-4	chr1	138856562	138856762	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081226, exon 1 of 3)	exon (NM_001081226, exon 1 of 3)	192.0	NM_001081226	69549.0	Mm.264673	NM_001081226	ENSMUSG00000079283	2310009B15Rik	-	RIKEN cDNA 2310009B15 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-89376297-3	chr13	89376182	89376382	+	852.422241	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-164354.0	NM_013500	12950.0	Mm.266790	NM_013500	ENSMUSG00000021613	Hapln1	BB099155|CLP|Crtl1|Crtl1l|LP|LP-1	hyaluronan and proteoglycan link protein 1	protein-coding	1.47557503047771	0.860441088539264	1.98183542435861	2.50310920406702	1.01493765282379	1.84867816288587	0.842700478339161	0.822535688520713	-1.90649435560467	0.152960860235068	0.607154080646345
Merged-chr4-128616624-2	chr4	128616531	128616731	+	737.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_205823, exon 1 of 1)	exon (NM_205823, exon 1 of 1)	1988.0	NM_205823	384059.0	Mm.331901	NM_205823	ENSMUSG00000062545	Tlr12	Gm1365|Tlr11	toll-like receptor 12	protein-coding	0.153472062048345	0.172790517112204	0.166475465367983	0.887671476802827	0.431389569355296	0.680521402157993	0.504641124517086	0.162447614443073	0.366418870142082	0.85424109932124	1
Merged-chr10-67182780-4	chr10	67182681	67182881	+	966.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207221, intron 2 of 25)	intron (NM_207221, intron 2 of 25)	-2969.0	NM_001242396	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-10428410-2	chr10	10428310	10428510	+	573.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001127353, intron 9 of 36)	intron (NM_001127353, intron 9 of 36)	43904.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-60000415-2	chr1	60000315	60000515	+	627.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357296, intron 9 of 10)	L1M4b|LINE|L1	42707.0	NM_001357296	70375.0	Mm.17834	NM_027407	ENSMUSG00000026018	Ica1l	1700030B17Rik|Als2cr15|b2b3465Clo	islet cell autoantigen 1-like	protein-coding	1.07128533405286	1.21962241703947	0.688349423309834	0.68038446615437	1.0809320743823	1.082800678434	1.50768972905744	1.01128902736406	1.17314200403121	0.414414613840483	0.896442802092227
Merged-chr16-13294451-3	chr16	13294373	13294573	+	566.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122667, intron 2 of 16)	intron (NM_001122667, intron 2 of 16)	29394.0	NM_181860	239719.0	Mm.270643	NM_153588	ENSMUSG00000009569	Mkl2	Gt4-1|MRTF-B|Mrtfb|mKIAA1243	MKL/myocardin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-55513057-4	chr1	55512934	55513134	+	858.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114663, intron 1 of 5)	intron (NM_001114663, intron 1 of 5)	107088.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	3.66460520226309	2.54772871074659	3.08222926899301	3.94083863353428	3.10760378105427	3.56708115985296	1.56020639249704	2.02095337993611	-0.999589471765099	0.196792258674862	0.678723760037973
Merged-chr11-102192298-1	chr11	102192198	102192398	+	541.0	f1_balb.idr	intron (NM_175935, intron 2 of 5)	intron (NM_175935, intron 2 of 5)	2599.0	NM_175935	68401.0	Mm.22385	NM_175935	ENSMUSG00000034793	G6pc3	0710001K01Rik|AU019276|AU045429|AV128920|AW545836|UGRP	glucose 6 phosphatase, catalytic, 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-37620739-4	chr13	37620620	37620820	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-205318.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120281575-2	chr8	120281475	120281675	+	670.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53345.0	NR_110496	434353.0	Mm.411793	NR_110496	ENSMUSG00000097960	A330074K22Rik	-	RIKEN cDNA A330074K22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-96916636-4	chr11	96916534	96916734	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001308183)	promoter-TSS (NM_001308183)	-120.0	NM_030248	80280.0	Mm.28297	NM_030248	ENSMUSG00000018669	Cdk5rap3	1810007E24Rik|BC002318|C53|C81486|HSF-27|IC53|LZAP|MST016	CDK5 regulatory subunit associated protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-119294639-4	chr4	119294571	119294771	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011732)	promoter-TSS (NM_011732)	-158.0	NM_011732	22608.0	Mm.258204	NM_011732	ENSMUSG00000028639	Ybx1	1700102N10Rik|C79409|EF1A|MSY1|Nsep1|YB-1|dbpB|mYB-1a	Y box protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118142596-2	chr11	118142496	118142696	+	670.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13377.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-116305357-2	chr7	116305257	116305457	+	644.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001305185, intron 3 of 26)	MTD|LTR|ERVL-MaLR	3019.0	NM_001305185	233765.0	Mm.3741	NM_172743	ENSMUSG00000045659	Plekha7	A430081P20Rik|AI414265	pleckstrin homology domain containing, family A member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35181188-2	chr17	35181088	35181288	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-5136.0	NM_001361501	11629.0	Mm.10747	NM_019467	ENSMUSG00000024397	Aif1	AI607846|AIF-1|D17H6S50E|G1|Iba1	allograft inflammatory factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-48881650-1	chr7	48881550	48881750	+	566.0	f0_balb.idr	promoter-TSS (NM_001360812)	promoter-TSS (NM_001360812)	-54.0	NM_001360812	108961.0	Mm.240566	NM_001013368	ENSMUSG00000046179	E2f8	4432406C08Rik|AA410048	E2F transcription factor 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-81327906-2	chr7	81327806	81328006	+	949.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008803, intron 19 of 21)	intron (NM_008803, intron 19 of 21)	17328.0	NM_009092	20068.0	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-103940709-4	chr8	103940610	103940810	+	884.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-160915.0	NM_009868	12562.0	Mm.21767	NM_009868	ENSMUSG00000031871	Cdh5	7B4|AA408225|Cd144|VE-Cad|VECD|VEcad|Vec	cadherin 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-4629850-3	chr11	4629755	4629955	+	912.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027797, intron 1 of 3)	MIR3|SINE|MIR	156.0	NR_027797	327860.0	Mm.186065	NM_177799	ENSMUSG00000056288	Gm11961	-	predicted gene 11961	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-62389533-2	chr15	62389445	62389645	+	722.75	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	-170094.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	2.61119277504355	3.02723035840249	3.34372741043721	2.66265521546422	2.09111439120441	1.98860516900357	2.54467727118562	1.38473067244718	-1.83574118761515	0.0260510939396889	0.215714400820927
Merged-chr1-132160187-2	chr1	132160087	132160287	+	576.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20502.0	NM_008795	18557.0	Mm.28130	NM_008795	ENSMUSG00000026437	Cdk18	AA682070|Ctk18|Pctk3	cyclin-dependent kinase 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69365104-4	chr11	69365011	69365211	+	952.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146019, intron 1 of 39)	intron (NM_146019, intron 1 of 39)	4315.0	NM_146019	216848.0	Mm.178246	NM_146019	ENSMUSG00000018474	Chd3	2600010P09Rik|AF020312|Chd7|Prp7|Prp9-1	chromodomain helicase DNA binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-55209888-3	chr11	55209760	55209960	+	620.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153139, intron 1 of 10)	intron (NM_153139, intron 1 of 10)	5520.0	NM_153139	215335.0	Mm.35732	NM_153139	ENSMUSG00000020261	Slc36a1	5830411H19Rik|AI839897|Pat1	solute carrier family 36 (proton/amino acid symporter), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16309471-4	chr7	16309341	16309541	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133234)	promoter-TSS (NM_133234)	-142.0	NM_133234	170770.0	Mm.7660	NM_133234	ENSMUSG00000002083	Bbc3	PUMA|PUMA/JFY1	BCL2 binding component 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120790883-4	chr8	120790765	120790965	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52226.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-121687624-2	chr11	121687524	121687724	+	777.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14473.0	NM_178664	210004.0	Mm.386847	NM_178664	ENSMUSG00000046605	B3gntl1	6030413G23Rik	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67736805-4	chr10	67736709	67736909	+	985.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-164850.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27909328-4	chr17	27909241	27909441	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026836)	promoter-TSS (NM_026836)	35.0	NM_181413	224650.0	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-34528013-1	chr5	34527913	34528113	+	1000.0	f1_balb.idr	intron (NM_011893, intron 1 of 12)	intron (NM_011893, intron 1 of 12)	2229.0	NM_011893	24055.0	Mm.5012	NM_011893	ENSMUSG00000054520	Sh3bp2	3BP2	SH3-domain binding protein 2	protein-coding	-1.36015291771705	-1.32842431658676	-1.33874579108173	-1.34722415754512	-1.35969949349639	-1.32618761000664	-1.33640923549635	-0.791042329471244	2.42373733289067	0.484013421080845	1
Merged-chr10-128748448-4	chr10	128748362	128748562	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253704)	promoter-TSS (NM_001253704)	7.0	NM_001253704	78428.0	Mm.27358	NM_030100	ENSMUSG00000064030	Pym1	A030010B05Rik|Pym|Wibg	PYM homolog 1, exon junction complex associated factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-103144346-2	chr12	103144246	103144446	+	653.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081017, intron 38 of 48)	intron (NM_001081017, intron 38 of 48)	97800.0	NM_133364	170952.0	Mm.217019	NM_133364	ENSMUSG00000041669	Prima1	B230212M13Rik|BB120497|PRiMA	proline rich membrane anchor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-157069653-4	chr2	157069558	157069758	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164663, intron 1 of 14)	intron (NM_001164663, intron 1 of 14)	9607.0	NM_001164663	320706.0	Mm.79466	NM_001164663	ENSMUSG00000055485	Soga1	9830001H06Rik|AI426038|D430036N24Rik|Soga	suppressor of glucose, autophagy associated 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-40646745-2	chr19	40646645	40646845	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001304721, intron 1 of 9)	RLTR34B_MM|LTR|ERVK	-13025.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	1.07281544082832	1.0222503075862	0.491561220971113	1.15418910936966	1.17085855365185	0.502554266646324	0.493547408454781	0.485807581743229	-1.26625900912151	0.471170821042435	1
Merged-chr2-178506872-2	chr2	178506772	178506972	+	648.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	76357.0	NM_198656	381409.0	Mm.330860	NM_198656	ENSMUSG00000039155	Cdh26	Gm1010	cadherin-like 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-61703707-8	chr9	61703566	61703766	+	819.161438	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	210844.0	NM_018853	56040.0	Mm.3158	NM_018853	ENSMUSG00000007892	Rplp1	2410042H16Rik|Arpp1|C430017H15Rik	ribosomal protein, large, P1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-113588816-2	chr13	113588716	113588916	+	702.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29748.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-89931230-2	chr1	89931130	89931330	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010262)	promoter-TSS (NM_010262)	-54.0	NM_010262	14472.0	Mm.204730	NM_010262	ENSMUSG00000034486	Gbx2	D130058E05Rik|Gbx-2|MMoxA|Stra7	gastrulation brain homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5073358-2	chr19	5073258	5073458	+	815.785706	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5280.0	NM_054042	70445.0	Mm.29597	NM_054042	ENSMUSG00000056481	Cd248	2610111G01Rik|AI842296|Cd164l1|Tem1	CD248 antigen, endosialin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-133783246-2	chr7	133783146	133783346	+	913.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286031)	promoter-TSS (NM_001286031)	-461.0	NM_001286031	101437.0	Mm.199223	NM_133941	ENSMUSG00000030986	Dhx32	3110079L04Rik|4732469F02Rik|AA408140|Ddx32|muDDX32	DEAH (Asp-Glu-Ala-His) box polypeptide 32	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-31351438-4	chr12	31351311	31351511	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007861)	promoter-TSS (NM_007861)	60.0	NM_007861	13382.0	Mm.3131	NM_007861	ENSMUSG00000020664	Dld	-	dihydrolipoamide dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-83595168-4	chr15	83595064	83595264	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183017)	promoter-TSS (NM_183017)	-7.0	NM_183017	223723.0	Mm.46778	NM_183017	ENSMUSG00000016757	Ttll12	BC055368|D430005B17	tubulin tyrosine ligase-like family, member 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117272141-2	chr10	117272041	117272241	+	544.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10131.0	NM_017372	17105.0	Mm.45436	NM_017372	ENSMUSG00000069516	Lyz2	AI326280|Lys|Lysm|Lyzf2|Lyzs|Lzm|Lzm-s1|Lzp	lysozyme 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-33995073-1	chr17	33994973	33995173	+	764.0	f1_c57bl6.idr	TTS (NM_001347346)	TTS (NM_001347346)	5260.0	NM_001001892	14972.0	Mm.422886	NM_001001892	ENSMUSG00000061232	H2-K1	H-2K|H-2K(d)|H2-K|K-f	histocompatibility 2, K1, K region	protein-coding	3.71830614844607	4.08875715614528	2.16602027578698	3.80314534297179	2.84623551215425	3.4163193769202	1.94459474592489	3.44267569247232	-0.905172970779814	0.191261814202721	0.669546561020494
Merged-chr11-102393413-2	chr11	102393313	102393513	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016759)	promoter-TSS (NM_016759)	10.0	NM_001252347	51799.0	Mm.2560	NM_016759	ENSMUSG00000006575	Rundc3a	RPIP-8|Rap2ip|Rpip8	RUN domain containing 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-79811148-4	chr7	79811045	79811245	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008589, exon 1 of 2)	exon (NM_008589, exon 1 of 2)	418.0	NM_008589	17293.0	Mm.31472	NM_008589	ENSMUSG00000030543	Mesp2	bHLHc6	mesoderm posterior 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-23572376-2	chr9	23572276	23572476	+	644.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	349300.0	NM_028472	73230.0	Mm.335020	NM_028472	ENSMUSG00000031963	Bmper	3110056H04Rik|CV-2|Crim3|Cv2	BMP-binding endothelial regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-61490025-2	chr2	61489925	61490125	+	784.916626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-88561.0	NM_011529	21353.0	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-164823442-4	chr2	164823352	164823552	+	892.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028028, intron 1 of 1)	intron (NM_028028, intron 1 of 1)	766.0	NM_028028	71971.0	Mm.161149	NM_028028	ENSMUSG00000017764	Zswim1	2410003H12Rik|AI850991|BB046916	zinc finger SWIM-type containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-145201761-4	chr4	145201767	145201967	+	951.5089109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-6862.0	NM_001276465	230895.0	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-84944979-2	chr15	84944879	84945079	+	564.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001033273)	TTS (NM_001033273)	6644.0	NR_037206	100526461.0		NR_037206	ENSMUSG00000080441	Mir1249	mir-1249|mmu-mir-1249	microRNA 1249	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-3649113-4	chr11	3649031	3649231	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159288)	promoter-TSS (NM_001159288)	-317.0	NR_002321	544752.0	Mm.390314	NR_002321	ENSMUSG00000056579	Tug1	AI316828	taurine upregulated gene 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-57015252-2	chr17	57015152	57015352	+	824.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-3964.0	NM_133801	98053.0	Mm.24632	NM_133801	ENSMUSG00000002658	Gtf2f1	2810405L04Rik|C76800|RAP74	general transcription factor IIF, polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-48016293-4	chr6	48016197	48016397	+	897.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31497.0	NM_001347139	72306.0	Mm.381553	NM_001081382	ENSMUSG00000071477	Zfp777	2500002G23Rik	zinc finger protein 777	protein-coding	2.487877187922	2.54812335166819	2.58595726967972	3.11527724327584	2.60360313341681	1.84066197105631	2.18379557848837	3.25626299428955	-0.221135843786382	0.779343339479643	0.998431161219273
Merged-chr6-54171904-1	chr6	54171804	54172004	+	874.3333130000001	f0_balb.idr	intron (NM_001163640, intron 1 of 12)	intron (NM_001163640, intron 1 of 12)	-92954.0	NM_001311133	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	-0.429165910719733	-0.873612895455471	-0.880042310359133	-0.882147047040279	-0.515285789036623	-0.870994549976101	-0.879439369138014	-0.881779851595733	-0.36230783815378	0.907723332250447	1
Merged-chr4-63846014-2	chr4	63845914	63846114	+	788.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009403, intron 2 of 3)	intron (NM_009403, intron 2 of 3)	15270.0	NM_009403	21949.0	Mm.4664	NM_009403	ENSMUSG00000028362	Tnfsf8	CD153|CD30LG|Cd30l|Tnlg3a	tumor necrosis factor (ligand) superfamily, member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-8164296-2	chr14	8164196	8164396	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_178279, exon 19 of 19)	3' UTR (NM_178279, exon 19 of 19)	8696.0	NM_024221	68263.0	Mm.301527	NM_024221	ENSMUSG00000021748	Pdhb	2610103L06Rik|AL024199|C81408	pyruvate dehydrogenase (lipoamide) beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152538660-1	chr1	152538560	152538760	+	540.0	f1_balb.idr	intron (NM_016846, intron 10 of 17)	intron (NM_016846, intron 10 of 17)	86557.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-75440579-2	chr9	75440479	75440679	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039522)	promoter-TSS (NM_001039522)	-945.0	NM_001039522	235497.0	Mm.41508	NM_001006122	ENSMUSG00000042487	Leo1	Gm185	Leo1, Paf1/RNA polymerase II complex component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-126148443-4	chr4	126148366	126148566	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_172145, exon 1 of 3)	5' UTR (NM_172145, exon 1 of 3)	463.0	NM_172145	230752.0	Mm.41569	NM_172145	ENSMUSG00000050212	Eva1b	2610027C15Rik|Fam176b	eva-1 homolog B (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100580697-2	chr11	100580597	100580797	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_009923, exon 4 of 4)	exon (NM_009923, exon 4 of 4)	4806.0	NM_001146318	12799.0	Mm.15711	NM_009923	ENSMUSG00000006782	Cnp	CNPase|Cnp-1|Cnp1	2',3'-cyclic nucleotide 3' phosphodiesterase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131097840-4	chr1	131097745	131097945	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008551)	promoter-TSS (NM_008551)	-2.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	5.08459350921318	5.73206943102948	5.51458041393029	5.26428994764189	5.70551824751854	5.92168310833233	5.7603943909432	5.91566316102301	0.470385414663436	0.0735751055606971	0.410089025371107
Merged-chr3-37302903-3	chr3	37302806	37303006	+	604.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9540.0	NM_145825	207175.0	Mm.344708	NM_145825	ENSMUSG00000045031	Cetn4	-	centrin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-29362125-4	chr17	29362027	29362227	+	962.341675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013710, intron 1 of 15)	intron (NM_013710, intron 1 of 15)	1213.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	2.69656103563899	1.61342121771107	2.30612894338564	2.36252593304592	1.98772465687733	2.25956093122932	3.79755126530018	1.23637938085819	0.772485102833346	0.42242505314444	0.900322118218157
Merged-chr2-126520500-2	chr2	126520400	126520600	+	827.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-20653.0	NM_001359975	241633.0	Mm.222235	NM_001080944	ENSMUSG00000060131	Atp8b4	Im	ATPase, class I, type 8B, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75163738-4	chr11	75163589	75163789	+	974.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001098203)	TTS (NM_001098203)	4463.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	2.62163584981074	3.15234588895387	2.29371631244691	3.27870192483537	2.64381267995777	3.43221803528129	2.31199038246408	3.29496602219294	0.184866781951038	0.79286809638008	0.998431161219273
Merged-chr11-116413127-4	chr11	116413023	116413223	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027258)	promoter-TSS (NM_027258)	-91.0	NM_027258	217340.0	Mm.426344	NM_027258	ENSMUSG00000052949	Rnf157	2610036E23Rik|A130073L17Rik|mKIAA1917	ring finger protein 157	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-156729903-5	chr2	156729831	156730031	+	932.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042487, intron 1 of 6)	intron (NM_001042487, intron 1 of 6)	8652.0	NM_001042487	228836.0	Mm.22094	NM_146128	ENSMUSG00000061689	Dlgap4	AI225853|BC024558|DAP-4|DAP4|SAPAP-4|Sapap4|WBP16	DLG associated protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-31700394-4	chr16	31700241	31700441	+	920.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357281, intron 1 of 22)	B1_Mus1|SINE|Alu	4793.0	NM_001357281	13383.0	Mm.382	NM_007862	ENSMUSG00000022770	Dlg1	B130052P05Rik|Dlgh1|E-dlg/SAP97|SAP-97|SAP97|mKIAA4187	discs large MAGUK scaffold protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-13671422-2	chr8	13671322	13671522	+	821.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 1 of 23)	intron (NM_009025, intron 1 of 23)	6165.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	1.62835907177381	1.46222788550148	1.8849435977783	1.40318176207873	1.50961161271878	2.37706245295262	1.89932862903517	2.37590102710469	1.52840396895336	0.137087552036189	0.577469500630244
Merged-chr10-121507503-4	chr10	121507368	121507568	+	986.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31218.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	-1.56355737717652	-1.81244775989375	-1.82128546162293	-1.82854501295842	-1.83962066705452	-1.81053259306168	-1.81928479966835	-1.82724555674025	-1.28500227969968	0.715751224811686	1
Merged-chr14-52198355-4	chr14	52198248	52198448	+	854.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_201637, exon 37 of 37)	3' UTR (NM_201637, exon 37 of 37)	-1109.0	NM_033618	114741.0	Mm.21662	NM_033618	ENSMUSG00000035726	Supt16	Cdc68|Fact140|Spt16|Supt16h	suppressor of Ty 16	protein-coding	1.79168992745034	1.82559890102016	0.948188231085583	1.89909761690265	1.10260211008222	1.40620202694799	0.952102155809671	1.81624910800286	-1.00356677561006	0.427301859446755	0.902392427013133
Merged-chr16-49967296-4	chr16	49967220	49967420	+	810.412476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	11490.0	NR_153658	100503490.0	Mm.72499	NR_153658		Gm19723	-	predicted gene, 19723	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107289764-7	chr9	107289647	107289847	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001316691)	promoter-TSS (NM_001316691)	130.0	NM_178907	102626.0	Mm.222612	NM_178907	ENSMUSG00000032577	Mapkapk3	3PK|AI874665|MAPKAP-K3|MAPKAP3|MK-3|MK3|MapkKapk3	mitogen-activated protein kinase-activated protein kinase 3	protein-coding	6.67656302636538	6.5369193214066	6.68224066144062	5.88605354055954	6.04963363776637	5.87749085866619	5.63091305757916	6.06588975295604	-0.610155168385021	0.0112489440980402	0.118113913029422
Merged-chr2-131478468-4	chr2	131478394	131478594	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13368.0	NM_001177834	228608.0	Mm.136586	NM_145533	ENSMUSG00000027333	Smox	B130066H01Rik|PAO|PAOh1|SMO	spermine oxidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-133048283-4	chr7	133048143	133048343	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009980, intron 2 of 10)	intron (NM_009980, intron 2 of 10)	-32996.0	NM_001170744	13017.0	Mm.246240	NM_009980	ENSMUSG00000030970	Ctbp2	AA407280|D7Ertd45e|Gtrgeo6|Ribeye	C-terminal binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127708849-4	chr7	127708738	127708938	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009746)	promoter-TSS (NM_009746)	-72.0	NM_001347652	12055.0	Mm.89667	NM_009746	ENSMUSG00000030814	Bcl7c	C230096E12Rik	B cell CLL/lymphoma 7C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-23983391-2	chr16	23983291	23983491	+	924.5833130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_009744, intron 1 of 9)	CpG	-2108.0	NM_001348026	12053.0	Mm.347398	NM_009744	ENSMUSG00000022508	Bcl6	Bcl5	B cell leukemia/lymphoma 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-17074076-2	chr7	17073976	17074176	+	972.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007676)	promoter-TSS (NM_007676)	36.0	NM_007676	26436.0	Mm.143686	NM_007676	ENSMUSG00000066760	Psg16	Cea11|PSG|bCEA	pregnancy specific glycoprotein 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128503632-1	chr10	128503532	128503732	+	559.0	f1_c57bl6.idr	non-coding (NR_131150, exon 3 of 3)	non-coding (NR_131150, exon 3 of 3)	4385.0	NR_131151	654440.0	Mm.441262	NR_131150	ENSMUSG00000097353	A430046D13Rik	-	Riken cDNA A430046D13 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129307745-2	chr2	129307645	129307845	+	768.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_040371)	TTS (NR_040371)	2227.0	NM_010554	16175.0	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91407582-2	chr16	91407482	91407682	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008349, intron 1 of 6)	intron (NM_008349, intron 1 of 6)	1347.0	NM_008349	16155.0	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75138667-2	chr11	75138567	75138767	+	625.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001002764, intron 13 of 18)	intron (NM_001002764, intron 13 of 18)	29485.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-80731272-4	chr17	80731178	80731378	+	987.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3253.0	NM_001290345	225028.0	Mm.311948	NM_001081357	ENSMUSG00000024242	Map4k3	4833416M01Rik|4833416M07Rik|9530052P13Rik|Glk|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1	mitogen-activated protein kinase kinase kinase kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-106689953-2	chr9	106689853	106690053	+	603.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_030730, exon 22 of 22)	3' UTR (NM_030730, exon 22 of 22)	-4001.0	NM_001286498	21767.0	Mm.22266	NM_011573	ENSMUSG00000040813	Tex264	TEG-264	testis expressed gene 264	protein-coding	-1.14149542847138	-0.33100028091332	-1.12720875772362	-1.13728867753953	-1.14086750656251	-1.11193125150289	-1.12436624874263	-1.1356767669541	-2.98824766641611	0.369648585513947	1
Merged-chr6-97461911-4	chr6	97461811	97462011	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	MLT1A|LTR|ERVL-MaLR	-2625.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	3.49192758978117	3.68202681253714	3.28984585857858	3.86246706355411	3.95548121060629	2.9380410964615	2.29675789702997	4.39057531180063	0.082512938759295	0.893590515419435	0.998431161219273
Merged-chr9-21592846-4	chr9	21592747	21592947	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138303)	promoter-TSS (NM_138303)	-16.0	NM_138303	74766.0	Mm.475712	NM_138303	ENSMUSG00000032182	Yipf2	1300010K09Rik	Yip1 domain family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-19060668-2	chr10	19060568	19060768	+	558.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45258.0	NM_009397	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-75170564-2	chr14	75170464	75170664	+	724.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008879, intron 1 of 16)	MLT1C|LTR|ERVL-MaLR	34139.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141270952-2	chr4	141270852	141271052	+	591.583374	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19A|LTR|ERVK	-7487.0	NR_151527	100503810.0		NR_151527	ENSMUSG00000085395	Gm13056	-	predicted gene 13056	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-82908298-2	chr18	82908198	82908398	+	595.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2581.0	NM_183033	329003.0	Mm.326526	NM_183033	ENSMUSG00000058881	Zfp516	C330029B10Rik|D230016L03|Zfp26l|Znf516|mKIAA0222	zinc finger protein 516	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-112769966-1	chr13	112769866	112770066	+	688.5	f0_balb.idr	Intergenic	ID_B1|SINE|B4	-30811.0	NM_008903	19012.0	Mm.291029	NM_008247	ENSMUSG00000021759	Plpp1	Hic53|Hpic53|LPP-1|LPP1|PAP-2a|PAP2-alpha|PAP2a|Ppap2a|mPAP	phospholipid phosphatase 1	protein-coding	1.64751197578892	2.20270554120469	1.30498987791614	1.73570635699744	2.40931902627158	2.49282534604827	3.02350759093181	2.86172242927501	2.30312316319024	0.0105509716217947	0.113094601713782
Merged-chr1-87246238-2	chr1	87246138	87246338	+	708.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18115.0	NM_028889	98363.0	Mm.247951	NM_028889	ENSMUSG00000026255	Efhd1	4931430I01Rik|AI452351|PP3051|mitocalcin	EF hand domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-148742309-2	chr5	148742209	148742409	+	565.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_028285, intron 1 of 1)	B3|SINE|B2	469.0	NR_028285	70138.0	Mm.417834	NR_028285	ENSMUSG00000086494	2210417A02Rik	AV081004	RIKEN cDNA 2210417A02 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-34741974-4	chr2	34741870	34742070	+	935.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151469, intron 2 of 26)	intron (NR_151469, intron 2 of 26)	13262.0	NM_001356441	66691.0	Mm.156452	NM_025709	ENSMUSG00000026867	Gapvd1	2010005B09Rik|4432404J10Rik|AW108497|Gapex-5|RAP6|RME-6|mKIAA1521	GTPase activating protein and VPS9 domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-65957905-2	chr5	65957805	65958005	+	587.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-9219.0	NM_001081104	231252.0	Mm.140015	NM_001081104	ENSMUSG00000029205	Chrna9	2410015I05Rik|Acra9|EG666827|Gm8311	cholinergic receptor, nicotinic, alpha polypeptide 9	protein-coding	-0.0728842508324915	0.134587027676295	-0.294045864416316	-0.296410314233842	-0.299714228701825	0.142586964286298	-0.293365916355703	-0.295998828961	-0.524431037253044	0.834024566741004	1
Merged-chr4-150904233-2	chr4	150904133	150904333	+	814.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_020569, intron 4 of 6)	intron (NM_020569, intron 4 of 6)	5688.0	NM_020569	57320.0	Mm.277349	NM_020569	ENSMUSG00000028964	Park7	DJ-1|Dj1	Parkinson disease (autosomal recessive, early onset) 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-76646188-4	chr11	76646067	76646267	+	974.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26303.0	NM_177182	320522.0	Mm.131585	NM_177182	ENSMUSG00000044243	Bhlha9	A830053O21Rik|Fingerin	basic helix-loop-helix family, member a9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-40894104-1	chr8	40894004	40894204	+	596.0	f0_c57.idr	intron (NM_007514, intron 1 of 11)	intron (NM_007514, intron 1 of 11)	31737.0	NM_001044740	11988.0	Mm.4676	NM_007514	ENSMUSG00000031596	Slc7a2	20.5|AI158848|Atrc2|CAT-2|Cat2|Tea	solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-144980953-4	chr4	144980864	144981064	+	991.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276465, intron 68 of 69)	intron (NM_001276465, intron 68 of 69)	87827.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-136937019-4	chr2	136936919	136937119	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355671, intron 2 of 6)	intron (NM_001355671, intron 2 of 6)	37668.0	NM_001038641	74243.0	Mm.330612	NM_028201	ENSMUSG00000027281	Slx4ip	2210009G21Rik|2410004I22Rik|C85661|Slxip	SLX4 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-25434592-4	chr10	25434494	25434694	+	943.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013511, intron 1 of 19)	intron (NM_013511, intron 1 of 19)	26226.0	NM_013511	13822.0	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-45442743-2	chr8	45442643	45442843	+	579.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32124.0	NM_126166	142980.0	Mm.33874	NM_126166	ENSMUSG00000031639	Tlr3	AI957183	toll-like receptor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-50144862-3	chr6	50144760	50144960	+	737.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361248, intron 2 of 13)	ORR1F|LTR|ERVL-MaLR	34000.0	NM_001361248	56524.0	Mm.41288	NM_008016	ENSMUSG00000038388	Mpp6	P55t|Pals2	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116195458-4	chr11	116195393	116195593	+	947.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271898, intron 2 of 13)	intron (NM_001271898, intron 2 of 13)	-3362.0	NM_027107	69535.0	Mm.390347	NM_027107	ENSMUSG00000020778	Ten1	2310004N24Rik	TEN1 telomerase capping complex subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-9691116-2	chr15	9691016	9691216	+	687.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001305042, intron 10 of 36)	intron (NM_001305042, intron 10 of 36)	57752.0	NM_177123	320277.0	Mm.127822	NM_177123	ENSMUSG00000072663	Spef2	C230086A09Rik	sperm flagellar 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-145830350-4	chr6	145830273	145830473	+	987.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21990.0	NM_027760	71323.0	Mm.158669	NM_027760	ENSMUSG00000030259	Rassf8	5133400D11Rik|AA815821|AW123240|Hoj1|mHoj-1	Ras association (RalGDS/AF-6) domain family (N-terminal) member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-102963874-2	chr15	102963774	102963974	+	608.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2922.0	NM_010462	209448.0	Mm.31665	NM_010462	ENSMUSG00000022484	Hoxc10	AI506621|Hox-3.6	homeobox C10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-34851765-4	chr1	34851688	34851888	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145516, intron 1 of 7)	intron (NM_145516, intron 1 of 7)	1799.0	NM_001357425	226971.0	Mm.292751	NM_145516	ENSMUSG00000026123	Plekhb2	2310009M15Rik|AU018239|Evt2|Phdc|evt-2	pleckstrin homology domain containing, family B (evectins) member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-141014394-4	chr5	141014296	141014496	+	996.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13800.0	NM_175362	108723.0	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-149160178-4	chr4	149160150	149160350	+	834.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081274, intron 5 of 12)	intron (NM_001081274, intron 5 of 12)	5832.0	NM_001356332	110208.0	Mm.252080	NM_025801	ENSMUSG00000028961	Pgd	0610042A05Rik|AU019875|C78335	phosphogluconate dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-64040954-4	chr15	64040853	64041053	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360037, intron 1 of 11)	intron (NM_001360037, intron 1 of 11)	18811.0	NM_001360038	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-43290045-3	chr5	43289972	43290172	+	894.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_175937)	TTS (NM_175937)	-54718.0	NR_028417	665934.0	Mm.381491	NR_028417	ENSMUSG00000085720	Gm7854	EG665934	predicted gene 7854	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52277385-4	chr13	52277288	52277488	+	922.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	180647.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-66458581-4	chr18	66458481	66458681	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021451)	promoter-TSS (NM_021451)	-23.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-30085201-4	chr13	30085093	30085293	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51297.0	NM_153546	218121.0	Mm.89682	NM_153546	ENSMUSG00000038732	Mboat1	9130215M02Rik|BC023845|LPEAT1|Moact1|Oact1	membrane bound O-acyltransferase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-56118698-4	chr9	56118575	56118775	+	834.71875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011193, intron 3 of 14)	intron (NM_011193, intron 3 of 14)	28699.0	NM_011193	19200.0	Mm.2534	NM_011193	ENSMUSG00000032322	Pstpip1	CD2BP1|def-2	proline-serine-threonine phosphatase-interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-11453935-2	chr8	11453835	11454035	+	895.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_011227)	TTS (NM_011227)	-23994.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-142395711-4	chr3	142395613	142395813	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001190855)	promoter-TSS (NM_001190855)	-17.0	NM_019808	56376.0	Mm.117709	NM_019808	ENSMUSG00000028273	Pdlim5	1110001A05Rik|AI987914|C87059|Enh|Enh1|Enh2|Enh3|LIM	PDZ and LIM domain 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-136151248-2	chr4	136151148	136151348	+	789.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7426.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-118425629-4	chr4	118425558	118425758	+	945.537476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2435.0	NM_001039175	54325.0	Mm.282096	NM_019422	ENSMUSG00000006390	Elovl1	AA407424|BB151133|Ssc1	elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 1	protein-coding	0.294788441418896	0.978983645622737	0.92524095819685	0.48584223180065	0.296391051478795	0.321983565563778	0.31372735998111	1.08738130917494	-0.742606530520664	0.693309951503903	1
Merged-chr1-180813657-4	chr1	180813552	180813752	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008210)	promoter-TSS (NM_008210)	-47.0	NM_008210	15078.0	Mm.138832	NM_008210	ENSMUSG00000060743	H3f3a	EyeLinc14|H3.3A	H3 histone, family 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-48532492-1	chr9	48532392	48532592	+	549.0	f0_balb.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	37149.0	NM_001004191	434402.0	Mm.386950	NM_001004191	ENSMUSG00000042293	Gm5617	EG434402	predicted gene 5617	protein-coding	2.05745019488167	2.17677643118359	2.23701659243718	1.27105030498813	2.07507866405581	2.86016411613721	2.91534136821303	1.72889349220749	1.15684534661508	0.217033696073931	0.707538695710375
Merged-chr1-59315224-1	chr1	59315124	59315324	+	599.0	f1_balb.idr	intron (NM_001356389, intron 10 of 13)	intron (NM_001356389, intron 10 of 13)	58318.0	NM_001356389	271697.0	Mm.297713	NM_001033373	ENSMUSG00000026023	Cdk15	Als2cr7|Pftk2	cyclin-dependent kinase 15	protein-coding	-0.128694717008494	-0.118270133208907	-0.121727677969119	-0.124367152984379	0.283877175747005	0.194788746763927	0.373734236102573	-0.123907810561819	3.79071251079823	0.102190120894261	1
Merged-chr15-93294682-4	chr15	93294582	93294782	+	880.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024189, intron 2 of 3)	Lx7|LINE|L1	-19503.0	NM_001346785	223827.0	Mm.22819	NM_001033275	ENSMUSG00000036197	Gxylt1	Glt8d3|Gm1228|Gm87	glucoside xylosyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-106010195-4	chr12	106010111	106010311	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011705)	promoter-TSS (NM_011705)	-52.0	NM_011705	22367.0	Mm.2981	NM_011705	ENSMUSG00000021115	Vrk1	51PK	vaccinia related kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-24629418-4	chr16	24629326	24629526	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 5 of 12)	intron (NM_178665, intron 5 of 12)	-92429.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-95817592-4	chr10	95817483	95817683	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB4|LINE|L1	-123080.0	NM_001001932	216238.0	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-83210683-2	chr17	83210583	83210783	+	717.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4600.0	NM_134117	106522.0	Mm.311974	NM_134117	ENSMUSG00000024247	Pkdcc	AI115348|AW548124|Adtk1|ESTM17|MAd1|Sgk493|Vlk|X83346	protein kinase domain containing, cytoplasmic	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-108780132-3	chr4	108780015	108780215	+	891.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347163, intron 1 of 18)	CpG	973.0	NM_001347163	230597.0	Mm.196776	NM_183300	ENSMUSG00000034557	Zfyve9	Madhip|NSP|SARA|SMADIP	zinc finger, FYVE domain containing 9	protein-coding	1.62402246489038	2.90882896417378	2.59265997142423	3.19950524590182	2.4065386507686	3.28170803148523	2.18034460929412	2.53143588593546	-0.0687932617006901	0.932222690072918	0.998431161219273
Merged-chr2-13544499-4	chr2	13544412	13544612	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010067, intron 1 of 10)	GC_rich|Low_complexity|Low_complexity	152.0	NM_010067	13434.0	Mm.6979	NM_010067	ENSMUSG00000026723	Trdmt1	Dnmt2|Rnmt2	tRNA aspartic acid methyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-45452861-4	chr8	45452771	45452971	+	790.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-42252.0	NM_126166	142980.0	Mm.33874	NM_126166	ENSMUSG00000031639	Tlr3	AI957183	toll-like receptor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118147405-5	chr11	118147325	118147525	+	963.2000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18206.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-19419374-4	chr14	19419305	19419505	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GSAT_MM|Satellite|Satellite	183182.0	NM_001024706	432825.0	Mm.327147	NM_001024706	ENSMUSG00000095024	Gm5458	EG432825	predicted gene 5458	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120784663-2	chr11	120784563	120784763	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009053)	promoter-TSS (NM_009053)	148.0	NM_145370	209318.0	Mm.30195	NM_145370	ENSMUSG00000025156	Gps1	Cops1|Csn1|R75577|Sgn1	G protein pathway suppressor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-127339133-3	chr2	127339060	127339260	+	764.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010090)	TTS (NM_010090)	521.0	NM_172539	215095.0	Mm.31313	NM_172539	ENSMUSG00000050468	Astl	7420700F21|C87576|Sas1b	astacin-like metalloendopeptidase (M12 family)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-123941101-4	chr4	123941002	123941202	+	819.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23669.0	NM_017475	54170.0	Mm.220922	NM_017475	ENSMUSG00000028646	Rragc	AU041672|Gtr2|RAGC|TIB929|YGR163W	Ras-related GTP binding C	protein-coding	1.00967446269464	1.84085398413906	2.00883265824155	1.72353806462146	1.9496774970688	2.2059116928323	1.06011657467777	1.44336322953234	0.136913459680417	0.907986860882698	0.998431161219273
Merged-chr8-25037524-2	chr8	25037424	25037624	+	961.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081187, intron 2 of 8)	intron (NM_001081187, intron 2 of 8)	1438.0	NM_001081187	330723.0	Mm.334452	NM_001081187	ENSMUSG00000037406	Htra4	B430206E18Rik	HtrA serine peptidase 4	protein-coding	-1.84456824087626	-1.81369603968745	-1.82303204814395	-1.83070092346192	-1.84240106943552	-1.51787681909439	-1.82091858046888	-1.82932819844659	1.64481029852639	0.639921510788462	1
Merged-chr4-152224387-1	chr4	152224287	152224487	+	614.5	f0_balb.idr	intron (NM_133348, intron 4 of 8)	intron (NM_133348, intron 4 of 8)	24543.0	NM_001146058	70025.0	Mm.296191	NM_133348	ENSMUSG00000028937	Acot7	2410041A17Rik|Ach1|Act|Bach|CTE-IIa|Cte-II|Lach1	acyl-CoA thioesterase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-121014756-4	chr4	121014653	121014853	+	899.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133716, intron 1 of 9)	intron (NM_133716, intron 1 of 9)	2494.0	NM_133716	69780.0	Mm.271819	NM_133716	ENSMUSG00000032870	Smap2	1810031K02Rik|AA408614|Smap1l	small ArfGAP 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-97842937-4	chr7	97842858	97843058	+	952.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011035)	promoter-TSS (NM_011035)	19.0	NM_011035	18479.0	Mm.260227	NM_011035	ENSMUSG00000030774	Pak1	AW045634|PAK-1|Paka	p21 (RAC1) activated kinase 1	protein-coding	2.05077544218079	2.77377039568172	2.06777108794445	2.6941925561982	1.92822194296563	2.69161502338502	1.90542442251013	2.86642719612558	-0.0316578403981299	0.969922748162829	0.998431161219273
Merged-chr6-47920660-4	chr6	47920584	47920784	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001145881, exon 1 of 5)	5' UTR (NM_001145881, exon 1 of 5)	116.0	NM_001145881	232784.0	Mm.196782	NM_145576	ENSMUSG00000052763	Zfp212	Znf212|mKIAA3011	Zinc finger protein 212	protein-coding	5.66737491824834	5.35431865674989	5.77733281837804	4.17486877981192	5.89314133351472	5.45675942792932	5.85827440884774	4.19722500102146	0.146059750370353	0.71546835938212	0.998431161219273
Merged-chr14-76690452-4	chr14	76690356	76690556	+	909.0750119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12888.0	NR_015485	73272.0	Mm.116804	NR_015485	ENSMUSG00000101009	1700108F19Rik	1700020I02Rik|BB065030	RIKEN cDNA 1700108F19 gene	ncRNA	1.32049213301078	2.97116497295963	1.73422545096844	2.2737540097577	3.37331844158994	3.51539748543467	2.6563393129771	3.59361807028823	2.04875684644877	0.0100830921575925	0.109646773148152
Merged-chr6-30303316-3	chr6	30303194	30303394	+	932.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009459, intron 1 of 6)	intron (NM_009459, intron 1 of 6)	1245.0	NM_009459	22214.0	Mm.332967	NM_009459	ENSMUSG00000039159	Ube2h	1500009C23Rik|AI181839|AI326965|AI462483|AW227540|E2-20K|Gid3|N28148|Ubc8	ubiquitin-conjugating enzyme E2H	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-115469458-4	chr6	115469357	115469557	+	862.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001308354, intron 6 of 7)	intron (NM_001308354, intron 6 of 7)	47391.0	NM_011146	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115155977-4	chr5	115155865	115156065	+	994.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175403, intron 1 of 4)	intron (NM_175403, intron 1 of 4)	2211.0	NM_175403	109154.0	Mm.153963	NM_175403	ENSMUSG00000048578	Mlec	2410014A08Rik|AI850530|ESTM19|X83352|mKIAA0152	malectin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-17392972-4	chr17	17392879	17393079	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025934, intron 9 of 9)	ID_B1|SINE|B4	-9707.0	NM_025681	66643.0	Mm.268018	NM_025681	ENSMUSG00000047786	Lix1	5730466L18Rik	limb and CNS expressed 1	protein-coding	4.31363797012791	4.24458199608269	3.98701210002446	4.05843810722969	3.94521664679534	4.21230281420398	3.54883605244717	3.12359611326794	-0.545071868784253	0.24412514968819	0.741898061286449
Merged-chr7-16827433-1	chr7	16827333	16827533	+	547.0	f1_balb.idr	intron (NM_001039878, intron 5 of 17)	L2|LINE|L2	-10701.0	NM_173430	243853.0	Mm.39703	NM_173430	ENSMUSG00000048920	Fkrp	A830029B19Rik|AI842067|AI847300|LGMD1I|MDC1C	fukutin related protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122438161-4	chr8	122438063	122438263	+	986.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028354, intron 5 of 10)	intron (NR_028354, intron 5 of 10)	-5223.0	NM_007806	13057.0	Mm.271671	NM_007806	ENSMUSG00000006519	Cyba	b558|nmf333|p22-phox|p22phox	cytochrome b-245, alpha polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-18221372-2	chr2	18221272	18221472	+	719.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001190817, intron 10 of 12)	RSINE1|SINE|B4	156787.0	NM_001252561	17354.0	Mm.209175	NM_010804	ENSMUSG00000026743	Mllt10	Af10|B130021D15Rik|D630001B22Rik|mKIAA4140	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-119479329-4	chr6	119479223	119479423	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133940)	promoter-TSS (NM_133940)	-345.0	NM_133940	101358.0	Mm.125477	NM_133940	ENSMUSG00000030019	Fbxl14	AW322056|Fbx14l	F-box and leucine-rich repeat protein 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-116731934-2	chr8	116731834	116732034	+	655.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029441, intron 1 of 6)	intron (NM_029441, intron 1 of 6)	1057.0	NM_029441	75796.0	Mm.159575	NM_029441	ENSMUSG00000031758	Cdyl2	1700029M19Rik|4930453I21Rik|Gm20194	chromodomain protein, Y chromosome-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-132860406-2	chr7	132860306	132860506	+	592.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198017, intron 1 of 8)	intron (NM_198017, intron 1 of 8)	1181.0	NM_198017	109359.0	Mm.274824	NM_198017	ENSMUSG00000030965	Abraxas2	AA589499|AI853413|Abro1|C430003P19Rik|Fam175b	BRISC complex subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-76561884-3	chr16	76561788	76561988	+	771.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	13093.0	NR_155449	102632730.0		NR_155449		Gm30726	-	predicted gene, 30726	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-116668894-2	chr6	116668794	116668994	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178045, intron 1 of 10)	intron (NM_178045, intron 1 of 10)	4942.0	NM_178045	213391.0	Mm.257931	NM_178045	ENSMUSG00000042129	Rassf4	3830411C14Rik|AD037|AI586137	Ras association (RalGDS/AF-6) domain family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-81860244-4	chr12	81860147	81860347	+	968.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_018814, exon 1 of 36)	5' UTR (NM_018814, exon 1 of 36)	217.0	NM_018814	54604.0	Mm.86584	NM_018814	ENSMUSG00000021140	Pcnx	2900024E21Rik|3526401J03Rik|AF096286|AI327143|AI413187|Pcnx1|Pcnxl1	pecanex homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-50122679-3	chr17	50122561	50122761	+	851.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181397, intron 2 of 9)	intron (NM_181397, intron 2 of 9)	67836.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-138530129-3	chr3	138529998	138530198	+	918.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007917, intron 2 of 7)	intron (NM_007917, intron 2 of 7)	2830.0	NM_001313980	13684.0	Mm.3941	NM_007917	ENSMUSG00000028156	Eif4e	EG668879|Eif4e-ps|If4e|eIF-4E	eukaryotic translation initiation factor 4E	protein-coding	-2.18243820993087	-2.15538464093652	-2.16356586349869	-2.17028616330028	-2.18053909940952	-2.15361173587851	-2.16171381403791	-2.0403552525549	0.759018020146679	0.829933115115583	1
Merged-chr19-23758358-4	chr19	23758265	23758465	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177034)	promoter-TSS (NM_177034)	-511.0	NM_177034	319924.0	Mm.22879	NM_177034	ENSMUSG00000024897	Apba1	6430513E09Rik|Lin-10|Mint|Mint1|Urop11|X11|X11alpha	amyloid beta (A4) precursor protein binding, family A, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98026668-3	chr11	98026574	98026774	+	976.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159483)	promoter-TSS (NM_001159483)	-36.0	NM_001159483	19921.0	Mm.10247	NM_009078	ENSMUSG00000017404	Rpl19	-	ribosomal protein L19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-4702304-2	chr12	4702204	4702404	+	610.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011365, intron 31 of 38)	RLTR33|LTR|ERVK	36079.0	NM_029107	74855.0	Mm.269534	NM_029107	ENSMUSG00000079177	Fam228a	4930417G10Rik	family with sequence similarity 228, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-31936980-2	chr16	31936880	31937080	+	746.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172822, intron 1 of 2)	L1Md_F2|LINE|L1	3129.0	NM_172822	239827.0	Mm.440388	NM_172822	ENSMUSG00000045625	Pigz	F630022B06Rik	phosphatidylinositol glycan anchor biosynthesis, class Z	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-113173014-1	chr11	113172914	113173114	+	834.599976	f0_c57.idr	intron (NR_015556, intron 1 of 2)	intron (NR_015556, intron 1 of 2)	28824.0	NR_015556	72386.0	Mm.266961	NR_015556	ENSMUSG00000087259	2610035D17Rik	-	RIKEN cDNA 2610035D17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35394047-3	chr17	35393938	35394138	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_051981)	promoter-TSS (NR_051981)	-61.0	NR_051981	15016.0	Mm.439648	NR_051981	ENSMUSG00000055413	H2-Q5	H-2Q5|Qa-5|Qa5|Qat-5	histocompatibility 2, Q region locus 5	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-119558853-4	chr8	119558759	119558959	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019709)	promoter-TSS (NM_019709)	-98.0	NM_019709	56453.0	Mm.206934	NM_019709	ENSMUSG00000031835	Mbtps1	0610038M03Rik|AV003995|S1P|SKI-1|Ski1|mKIAA0091	membrane-bound transcription factor peptidase, site 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-87543504-4	chr6	87543426	87543626	+	850.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	-10267.0	NM_001286610	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-145301069-1	chr7	145300969	145301169	+	541.0	f1_c57bl6.idr	intron (NM_145379, intron 1 of 2)	intron (NM_145379, intron 1 of 2)	160.0	NM_145379	211577.0	Mm.215151	NM_145379	ENSMUSG00000031070	Mrgprf	BC019711|Mgrc|MrgF	MAS-related GPR, member F	protein-coding	1.26851805045252	1.79689153562859	1.51033091289632	0.838859841851265	1.2793285171808	1.0967646242698	0.853312864557195	1.77157334567138	-0.358708517103893	0.787967242826862	0.998431161219273
Merged-chr10-81338780-3	chr10	81338684	81338884	+	970.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_148951, intron 4 of 5)	RSINE1|SINE|B4	4482.0	NM_148951	209047.0	Mm.218755	NM_148951	ENSMUSG00000034872	Gipc3	Ahl5|Rgs19ip3	GIPC PDZ domain containing family, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-46536763-4	chr18	46536619	46536819	+	916.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER2|LTR|ERV1	-10748.0	NM_173423	240263.0	Mm.38249	NM_173423	ENSMUSG00000033319	Fem1c	2610312A07Rik|3632443A22Rik|AI646567	fem-1 homolog c (C.elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167770530-2	chr2	167770430	167770630	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	79353.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-45881747-3	chr18	45881647	45881847	+	961.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040342, intron 2 of 3)	intron (NR_040342, intron 2 of 3)	163513.0	NR_040342	107003.0	Mm.395148	NR_040342		A330093E20Rik	AU043608	RIKEN cDNA A330093E20 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-95944056-3	chr13	95943948	95944148	+	983.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52126.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	0.997173016938745	0.55124234920688	2.02878342519247	0.919533288935231	1.13092247486954	0.805230781507545	0.540203453694867	0.527808168897493	-1.95572384778476	0.205496418937341	0.693007158818748
Merged-chr11-114677249-2	chr11	114677149	114677349	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_053273, intron 1 of 13)	intron (NM_053273, intron 1 of 13)	1781.0	NM_053273	117160.0	Mm.271934	NM_053273	ENSMUSG00000034714	Ttyh2	1110001A03Rik	tweety family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-55230703-4	chr12	55230602	55230802	+	765.68335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001100109, intron 1 of 15).2	CpG	224.0	NM_001100110	100101806.0	Mm.471968	NM_001100110	ENSMUSG00000079108	Srp54c	E330029E12Rik	signal recognition particle 54C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91526554-2	chr16	91526454	91526654	+	699.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_105786)	TTS (NR_105786)	990.0	NR_105786	102465190.0		NR_105786	ENSMUSG00000099308	Mir6367	Gm27467|mmu-mir-6367	microRNA 6367	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-119388456-2	chr6	119388356	119388556	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_197985, intron 1 of 7)	CpG	278.0	NM_001355692	68465.0	Mm.291826	NM_197985	ENSMUSG00000030168	Adipor2	1110001I14Rik|ADCR2|AI115388|AW554121|D6Ucla1e|Paqr2	adiponectin receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-88122651-3	chr10	88122512	88122712	+	876.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029249, intron 6 of 10)	RSINE1|SINE|B4	24329.0	NM_029249	75317.0	Mm.179378	NM_029249	ENSMUSG00000035365	Parpbp	4930547N16Rik|AI503644|PARI	PARP1 binding protein	protein-coding	2.28815981881449	2.86183213544001	3.48012743861241	2.41666223587714	2.67582401924051	3.11427588863153	3.43675421044574	3.40316766622809	0.594762283269184	0.380957069930831	0.872649550356036
Merged-chr14-115040917-4	chr14	115040821	115041021	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2750.0	NR_029785	723905.0		NR_029785	ENSMUSG00000065508	Mir17	Mirn17|mir-17|mmu-mir-17	microRNA 17	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-126259173-2	chr4	126259073	126259273	+	992.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER20|DNA|hAT-Charlie	-2854.0	NM_001145970	245877.0	Mm.266716	NM_144941	ENSMUSG00000028849	Map7d1	AV028413|BC019977|Mtap7d1|Parcc1|Rprc1|mKIAA1187	MAP7 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27247735-2	chr2	27247635	27247835	+	643.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138665)	promoter-TSS (NM_138665)	-432.0	NM_138665	192166.0	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114929292-3	chr11	114929213	114929413	+	712.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199221, intron 1 of 3)	MTEa|LTR|ERVL-MaLR	5073.0	NM_001347651	217304.0	Mm.185355	NM_199221	ENSMUSG00000063193	Cd300lb	CLM-7|Clm7|Gm253|LMIR5	CD300 molecule like family member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-94760500-4	chr11	94760401	94760601	+	981.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001105561, intron 1 of 4)	intron (NM_001105561, intron 1 of 4)	681.0	NM_001105561	217122.0	Mm.24063	NM_183153		Gm11545	A430060F13Rik|C86086	predicted gene 11545	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-54303245-6	chr13	54303121	54303321	+	962.522217	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-68128.0	NM_009946	12890.0	Mm.268902	NM_009946	ENSMUSG00000025867	Cplx2	921-L|AI413745|AW492120|Gm34843	complexin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-119814500-2	chr8	119814484	119814684	+	573.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028071, intron 3 of 3)	intron (NM_028071, intron 3 of 3)	25995.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-98329775-4	chr9	98329663	98329863	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357445, intron 1 of 3)	intron (NM_001357445, intron 1 of 3)	33193.0	NM_001357451	74080.0	Mm.294082	NM_144533	ENSMUSG00000032456	Nmnat3	4933408N02Rik|PNAT3	nicotinamide nucleotide adenylyltransferase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-152759669-2	chr2	152759569	152759769	+	642.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289739, intron 4 of 4)	intron (NM_001289739, intron 4 of 4)	5496.0	NM_053091	84682.0	Mm.196668	NM_053091	ENSMUSG00000009876	Cox4i2	Cox4b|CoxIV-2	cytochrome c oxidase subunit 4I2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-4518197-2	chr2	4518097	4518297	+	593.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 7 of 23)	B4A|SINE|B4	-41557.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-74919736-3	chr15	74919663	74919863	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35288.0	NM_001164039	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-110466358-2	chr9	110466258	110466458	+	626.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360306, intron 1 of 9)	intron (NM_001360306, intron 1 of 9)	10336.0	NM_001360306	270201.0	Mm.41744	NM_177771	ENSMUSG00000054792	Klhl18	A930041K15|AW545966	kelch-like 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-146405054-1	chr6	146404954	146405154	+	559.0	f1_c57bl6.idr	intron (NM_019923, intron 10 of 56)	intron (NM_019923, intron 10 of 56)	97169.0	NM_010586	16439.0	Mm.7800	NM_010586	ENSMUSG00000030287	Itpr2	AI649341|InsP3R-2|InsP3R-5|Ip3r2|Itpr5|insP3R2	inositol 1,4,5-triphosphate receptor 2	protein-coding	0.438481720489179	1.13084436273441	0.457888216239724	1.03311352966589	0.440301161766323	1.14295548479932	0.459949699657601	1.04072728778655	0.0344580973347362	0.984549281432439	1
Merged-chr1-9630246-4	chr1	9630096	9630296	+	659.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015470, intron 1 of 4)	intron (NR_015470, intron 1 of 4)	896.0	NR_015470	72481.0	Mm.279818	NR_015470	ENSMUSG00000079671	2610203C22Rik	2310007M24Rik	RIKEN cDNA 2610203C22 gene	ncRNA	0.502617989039533	0.217520176546237	0.208765537157796	0.201933506576574	0.364764362346204	0.21947853480136	1.33914012548615	0.819744238020905	2.96610325782311	0.125824115581329	1
Merged-chr14-31163390-2	chr14	31163290	31163490	+	817.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_138672, exon 3 of 69)	exon (NM_138672, exon 3 of 69)	5251.0	NM_138672	192187.0	Mm.220821	NM_138672	ENSMUSG00000042286	Stab1	FEEL-1|FELE-1|MFEEL-1|MS-1|STAB-1|mKIAA0246	stabilin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-56428005-3	chr10	56427907	56428107	+	766.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-3974.0	NR_152769	102640560.0	Mm.417249	NR_152768		Gm36595	-	predicted gene, 36595	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-65311539-2	chr1	65311439	65311639	+	560.75	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_139270, exon 1 of 13)	5' UTR (NM_139270, exon 1 of 13)	282.0	NM_139270	213527.0	Mm.294225	NM_139270	ENSMUSG00000025946	Pth2r	Pthr2	parathyroid hormone 2 receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-104604950-2	chr7	104604850	104605050	+	991.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7771.0	NM_146820	258817.0	Mm.377706	NM_146820	ENSMUSG00000051182	Olfr655	MOR38-1	olfactory receptor 655	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-43531552-1	chr19	43531452	43531652	+	1000.0	f1_balb.idr	Intergenic	Intergenic	-6947.0	NM_010324	14718.0	Mm.19039	NM_010324	ENSMUSG00000025190	Got1	AI789014|Got-1|cAspAT|cCAT	glutamic-oxaloacetic transaminase 1, soluble	protein-coding	-1.84297643846673	-1.8130099360596	-1.82207205372894	-1.6869274651563	-1.84087284540582	-1.81104613735712	-1.82002058892457	-1.6855950118199	0.037684011990387	0.991491645451152	1
Merged-chr2-45104553-6	chr2	45104567	45104767	+	875.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149354, intron 2 of 2)	intron (NR_149354, intron 2 of 2)	5610.0	NM_001289521	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-108387353-4	chr8	108387247	108387447	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	197330.0	NR_077224	109215.0	Mm.65282	NR_077224	ENSMUSG00000110613	Lncbate1	3010033K07Rik|Lnc-BATE1	brown adipose tissue enriched long non-coding RNA 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-132620180-4	chr7	132620069	132620269	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029609, intron 1 of 6)	intron (NM_029609, intron 1 of 6)	9526.0	NM_029609	76429.0	Mm.276721	NM_029609	ENSMUSG00000030946	Lhpp	2310007H09Rik	phospholysine phosphohistidine inorganic pyrophosphate phosphatase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-30616558-3	chr15	30616492	30616692	+	794.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355502, intron 3 of 21)	intron (NM_001355502, intron 3 of 21)	-422534.0	NR_045186	73784.0	Mm.66947	NR_045186	ENSMUSG00000115474	4930430F21Rik	-	RIKEN cDNA 4930430F21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-17790730-2	chr15	17790630	17790830	+	548.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR27|LTR|ERVK	578897.0	NR_045711	70886.0	Mm.399021	NR_045711	ENSMUSG00000098150	4921515E04Rik	-	RIKEN cDNA 4921515E04 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-100150963-3	chr6	100150870	100151070	+	825.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	136388.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-100585691-2	chr5	100585591	100585791	+	868.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	-13486.0	NM_139198	231507.0	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-25054440-4	chr2	25054327	25054527	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020276)	promoter-TSS (NM_020276)	48.0	NM_001177655	56876.0	Mm.42956	NM_020276	ENSMUSG00000006476	Nsmf	Jacob|Nelf	NMDA receptor synaptonuclear signaling and neuronal migration factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-52523290-4	chr2	52523216	52523416	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037099, intron 2 of 13)	MLT1B|LTR|ERVL-MaLR	35295.0	NM_146123	12298.0	Mm.330223	NM_146123	ENSMUSG00000017412	Cacnb4	3110038O15Rik|Cchb4|lh	calcium channel, voltage-dependent, beta 4 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-20640201-3	chr14	20640093	20640293	+	699.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16347.0	NM_021508	59011.0	Mm.439911	NM_021508	ENSMUSG00000068697	Myoz1	2310001N11Rik|AV090278|FATZ|Myoz	myozenin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-102230202-4	chr11	102230085	102230285	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001284250)	promoter-TSS (NM_001284250)	-13.0	NM_001284250	15184.0	Mm.22665	NM_010412	ENSMUSG00000008855	Hdac5	AI426555|Hdac4|mHDA1|mKIAA0600	histone deacetylase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70901227-1	chr8	70901127	70901327	+	589.0	f0_c57.idr	Intergenic	RSINE1|SINE|B4	-3784.0	NM_029751	76808.0	Mm.379251	NM_029751	ENSMUSG00000045128	Rpl18a	2510019J09Rik	ribosomal protein L18A	protein-coding	2.87457652752194	2.2609477268241	1.90691353336874	2.1221263580584	1.91175591785865	2.277859019986	1.29694996901789	2.0070217691593	-1.06799346759162	0.260129045589757	0.761102655418445
Merged-chr6-134095875-3	chr6	134095750	134095950	+	725.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 2 of 8)	intron (NM_001303102, intron 2 of 8)	60150.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-23157840-2	chr8	23157740	23157940	+	640.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_029002, exon 3 of 3)	3' UTR (NM_029002, exon 3 of 3)	4569.0	NM_029002	74561.0	Mm.290028	NM_029002	ENSMUSG00000063672	Nkx6-3	9130417I07Rik|Nkx6.3	NK6 homeobox 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-185732954-2	chr1	185732854	185733054	+	667.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_030555, intron 4 of 6)	Lx5|LINE|L1	195618.0	NR_030555	100124483.0		NR_030555	ENSMUSG00000076976	Mir297c	Mirn297c	microRNA 297c	ncRNA	0.104163182701702	1.71493325474501	0.139322880737975	0.12647696474822	0.107565931749216	1.64758648016592	0.142919142183376	0.128751803227378	-0.113343418885663	0.972454354205421	0.998431161219273
Merged-chr13-117237346-4	chr13	117237240	117237440	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010330, intron 2 of 8)	intron (NM_010330, intron 2 of 8)	16767.0	NM_010330	13723.0	Mm.274926	NM_010330	ENSMUSG00000021728	Emb	AL022799|Gp70	embigin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-27179659-2	chr7	27179559	27179759	+	805.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029391)	promoter-TSS (NM_029391)	-776.0	NM_029391	19342.0	Mm.482114	NM_029391	ENSMUSG00000053291	Rab4b	1500031G17Rik	RAB4B, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-99198689-2	chr4	99198572	99198772	+	556.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175029, intron 1 of 10)	B1_Mur1|SINE|Alu	4525.0	NM_001145967	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	-0.262494881649611	-0.385549667838361	-0.389185748670305	0.205188739391034	-0.140074374482303	-0.384727637295725	-0.388385283897268	-0.234668188262671	-1.05542315496846	0.659833538947952	1
Merged-chr7-43309261-2	chr7	43309161	43309361	+	705.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027264, intron 2 of 4)	intron (NM_027264, intron 2 of 4)	4039.0	NM_001357812	69930.0	Mm.45367	NM_027264	ENSMUSG00000012640	Zfp715	2610041B18Rik|mszf15	zinc finger protein 715	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-104952565-2	chr12	104952465	104952665	+	727.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001042699, intron 12 of 18)	intron (NM_001042699, intron 12 of 18)	46112.0	NM_001042699	212073.0	Mm.212688	NM_172500	ENSMUSG00000054150	Syne3	KASH3|nesprin-3	spectrin repeat containing, nuclear envelope family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-23960562-4	chr17	23960445	23960645	+	958.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5272.0	NM_001077421	638345.0	Mm.46428	NM_001077421	ENSMUSG00000024125	Sbpl	2310068J22Rik	spermine binding protein-like	protein-coding	2.37784791594569	1.84259228139712	2.11735494581858	2.75981774283702	3.09862527760436	1.34940236233756	1.57889152987737	2.42618904650606	0.0221546784351502	0.981793395251739	0.998431161219273
Merged-chr11-96974475-2	chr11	96974375	96974575	+	832.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030220, intron 1 of 6)	B1F|SINE|Alu	3213.0	NM_030220	78912.0	Mm.491183	NM_030220	ENSMUSG00000018678	Sp2	4930480I16Rik|mKIAA0048	Sp2 transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101627057-5	chr11	101626936	101627136	+	808.266663	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025654)	promoter-TSS (NM_025654)	-913.0	NM_025654	66599.0	Mm.41449	NM_025654	ENSMUSG00000010362	Rdm1	2410008M22Rik|AW212028|Rad52b	RAD52 motif 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90578669-3	chr2	90578588	90578788	+	851.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	1959.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-57743141-2	chr10	57743041	57743241	+	851.1666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41782.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-152115005-2	chr2	152114905	152115105	+	545.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9481.0	NM_029688	76650.0	Mm.218639	NM_029688	ENSMUSG00000032802	Srxn1	1700127B04Rik|AI854065|AW488194|Npn3|Srx|Srx1|TX01	sulfiredoxin 1 homolog (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-57144417-2	chr9	57144317	57144517	+	940.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028347, intron 5 of 9)	intron (NM_028347, intron 5 of 9)	3888.0	NM_028347	72774.0	Mm.35749	NM_028347	ENSMUSG00000032298	Neil1	2810450N13Rik|NEH1|Nei1	nei endonuclease VIII-like 1 (E. coli)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-43959342-4	chr19	43959227	43959427	+	896.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030703, intron 8 of 8)	intron (NM_030703, intron 8 of 8)	-19129.0	NM_028029	71972.0	Mm.159024	NM_028029	ENSMUSG00000025195	Dnmbp	2410003L07Rik|2410003M15Rik|TUBA	dynamin binding protein	protein-coding	2.58685311636712	2.14705785305553	1.39778341599243	2.9679957425688	1.92354537411622	3.32391869881666	2.39361092745309	2.55069114463693	0.486426221860374	0.582587036116158	0.966599221005409
Merged-chr17-84380533-2	chr17	84380433	84380633	+	577.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_183021, intron 26 of 37)	RSINE1|SINE|B4	85675.0	NM_183021	240174.0	Mm.246767	NM_177826	ENSMUSG00000024251	Thada	6530405K19|A930021O22|AU019899|BC052885|GITA	thyroid adenoma associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-22982246-4	chr11	22982120	22982320	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144514)	promoter-TSS (NM_144514)	64.0	NM_144514	17846.0	Mm.259903	NM_144514	ENSMUSG00000051355	Commd1	AI256843|Murr1|U2/Mu	COMM domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-5834624-4	chr18	5834532	5834732	+	918.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	241985.0	NM_001360981	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117523958-2	chr8	117523858	117524058	+	621.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172285, intron 2 of 32)	intron (NM_172285, intron 2 of 32)	25683.0	NM_172285	234779.0	Mm.192699	NM_172285	ENSMUSG00000034330	Plcg2	PLC-gamma-2|PLCgamma2|Plcg-2	phospholipase C, gamma 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-92038896-2	chr9	92038807	92039007	+	551.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_A|LINE|L1	-154029.0	NM_001195693	100504689.0	Mm.464262	NM_001195693	ENSMUSG00000095654	Plscr5	331000	phospholipid scramblase family, member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-12369317-5	chr13	12369202	12369402	+	828.349976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26073.0	NM_144835	217995.0	Mm.171186	NM_144835	ENSMUSG00000050244	Heatr1	AA517551|B130016L12Rik|BC019693	HEAT repeat containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-39910141-4	chr9	39910036	39910236	+	943.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_146613, exon 1 of 1)	exon (NM_146613, exon 1 of 1)	331.0	NM_146613	258606.0	Mm.377588	NM_146613	ENSMUSG00000095390	Olfr229	MOR171-14|Olfr229-ps1|Olfr973|Olfr973-ps1	olfactory receptor 229	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-25011289-4	chr5	25011210	25011410	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145401, intron 3 of 15)	intron (NM_145401, intron 3 of 15)	-15557.0	NM_001310480	108099.0	Mm.33649	NM_145401	ENSMUSG00000028944	Prkag2	2410051C13Rik|AAKG|AAKG2|AI854673|H91620p|WPWS	protein kinase, AMP-activated, gamma 2 non-catalytic subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-39653042-4	chr18	39652938	39653138	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-120459.0	NM_011033	18459.0	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-114870268-3	chr9	114870114	114870314	+	895.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-26062.0	NM_027294	70031.0	Mm.150064	NM_027294	ENSMUSG00000041012	Cmtm8	2700018N07Rik|AA408515|Cklfsf8	CKLF-like MARVEL transmembrane domain containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-69672533-1	chr3	69672433	69672633	+	542.0	f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-49522.0	NM_133787	97112.0	Mm.21062	NM_133787	ENSMUSG00000027787	Nmd3	C87860	NMD3 ribosome export adaptor	protein-coding	1.50739945642809	0.963276742427305	1.3523832454547	2.21458479938458	1.72599592487564	1.72049926507242	1.36273896354618	0.933374198167403	-0.41159655674797	0.742336797301905	0.998431161219273
Merged-chr11-117651963-2	chr11	117651863	117652063	+	662.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-2326.0	NM_198022	217351.0	Mm.40272	NM_198022	ENSMUSG00000025571	Tnrc6c	9930033H14Rik|mKIAA1582	trinucleotide repeat containing 6C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166493783-2	chr2	166493683	166493883	+	710.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46332.0	NR_015558	319684.0	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-94286336-3	chr13	94286280	94286480	+	797.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346609)	promoter-TSS (NM_001346609)	-549.0	NM_001346609	107767.0	Mm.201455	NM_029153	ENSMUSG00000021687	Scamp1	4930505M11Rik|AI415563|AW122395	secretory carrier membrane protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167781593-2	chr2	167781493	167781693	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	90416.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-25798408-4	chr6	25798296	25798496	+	856.8624880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133931, intron 3 of 17)	intron (NM_133931, intron 3 of 17)	10830.0	NM_133931	101185.0	Mm.274589	NM_133931	ENSMUSG00000029676	Pot1a	1500031H18Rik|AI851169|Pot1	protection of telomeres 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19749773-4	chr7	19749678	19749878	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159724)	promoter-TSS (NM_001159724)	-205.0	NM_001159724	19294.0	Mm.4341	NM_008990	ENSMUSG00000062300	Nectin2	AI325026|AI987993|Cd112|MPH|Pvr|Pvrl2|Pvs|nectin-2	nectin cell adhesion molecule 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-28482389-4	chr6	28482292	28482492	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019776, intron 1 of 23)	intron (NM_019776, intron 1 of 23)	2044.0	NM_019776	56463.0	Mm.439987	NM_019776	ENSMUSG00000001424	Snd1	AL033314|Tudor-SN	staphylococcal nuclease and tudor domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-68927137-2	chr8	68927048	68927248	+	590.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	46593.0	NM_008509	16956.0	Mm.1514	NM_008509	ENSMUSG00000015568	Lpl	-	lipoprotein lipase	protein-coding	1.59250699987658	1.58782533054046	1.08193016562133	1.4820299733174	1.02274997470242	1.11952654932529	0.878749165323124	1.86942208177644	-0.545491892526217	0.670042432050754	0.99359666617512
Merged-chr6-86578771-2	chr6	86578671	86578871	+	818.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49403.0	NM_026414	67855.0	Mm.183043	NM_026414	ENSMUSG00000033508	Asprv1	2300003P22Rik|AA986851|SASP|SASPase|Taps	aspartic peptidase, retroviral-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-154786397-4	chr1	154786300	154786500	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60480.0	NM_009782	12290.0	Mm.267517	NM_009782	ENSMUSG00000004110	Cacna1e	A430040I15|BII|Cach6|Cacnl1a6|Cav2.3|Cchra1|alpha1E	calcium channel, voltage-dependent, R type, alpha 1E subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-84763243-2	chr18	84763143	84763343	+	730.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	19176.0	NR_155706	102641800.0		NR_155706		Gm38576	-	predicted gene, 38576	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-17163840-2	chr1	17163740	17163940	+	778.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010267, exon 6 of 6)	3' UTR (NM_010267, exon 6 of 6)	18467.0	NM_010267	14545.0	Mm.18218	NM_010267	ENSMUSG00000025777	Gdap1	-	ganglioside-induced differentiation-associated-protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-62940787-4	chr16	62940693	62940893	+	990.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	86486.0	NM_011173	19128.0	Mm.127156	NM_011173	ENSMUSG00000022912	Pros1	AW214361	protein S (alpha)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-4120232-1	chr10	4120132	4120332	+	703.0	f1_balb.idr	intron (NM_001170785, intron 26 of 27)	intron (NM_001170785, intron 26 of 27)	92888.0	NR_152620	102632515.0	Mm.416995	NR_152620	ENSMUSG00000111266	Gm30570	-	predicted gene, 30570	ncRNA	-0.786262629245248	-0.776497758068123	-0.779701483814774	-0.782170269015053	-0.785654354407548	-0.270941693778889	-0.778995247043066	-0.348526007787681	3.17456216948478	0.277662686590329	1
Merged-chr11-102293011-1	chr11	102292911	102293111	+	566.0	f1_c57bl6.idr	intron (NM_001098836, intron 8 of 12)	intron (NM_001098836, intron 8 of 12)	3618.0	NM_001098836	217218.0	Mm.390381	NM_001098836	ENSMUSG00000059995	Atxn7l3	E030022H21Rik	ataxin 7-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-34872041-4	chr6	34871951	34872151	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001347101, exon 4 of 4)	3' UTR (NM_001347101, exon 4 of 4)	6014.0	NM_199145	78412.0	Mm.248440	NM_199145	ENSMUSG00000046806	3110062M04Rik	AL023049|Cyren|Mri	RIKEN cDNA 3110062M04 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-23856870-2	chr18	23856770	23856970	+	642.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162941, intron 4 of 7)	intron (NM_001162941, intron 4 of 7)	52900.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132304208-3	chr4	132304107	132304307	+	670.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081651)	promoter-TSS (NM_001081651)	-851.0	NM_001081651	242681.0	Mm.331927	NM_001081651	ENSMUSG00000089687	Rab42	9530096D07Rik|Rab42-ps	RAB42, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-19153875-2	chr3	19153775	19153975	+	551.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357689, intron 2 of 6)	intron (NM_001357689, intron 2 of 6)	9220.0	NM_028840	74252.0	Mm.200383	NM_028840	ENSMUSG00000027599	Armc1	2310016N05Rik|2900046P06Rik|3110009G21Rik|AA409258|AW048872|Arcp|C330014L16Rik	armadillo repeat containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-53389729-2	chr9	53389629	53389829	+	834.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_212445, intron 2 of 7)	intron (NM_212445, intron 2 of 7)	5706.0	NM_212445	68304.0	Mm.427519	NM_212445	ENSMUSG00000034487	Kdelc2	2010004J24Rik|4833410J10Rik|AW549401	KDEL (Lys-Asp-Glu-Leu) containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75462475-4	chr11	75462378	75462578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030711, intron 1 of 2)	intron (NR_030711, intron 1 of 2)	939.0	NR_030711	100042498.0	Mm.482242	NR_030711	ENSMUSG00000085148	Mir22hg	2210403K04Rik|mir-22	Mir22 host gene (non-protein coding)	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19381935-4	chr7	19381838	19382038	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007949)	promoter-TSS (NM_007949)	-101.0	NM_007949	13871.0	Mm.36524	NM_007949	ENSMUSG00000030400	Ercc2	AA407812|AU020867|AW240756|CXPD|Ercc-2|Mhdarco15|RCO015|XPD	excision repair cross-complementing rodent repair deficiency, complementation group 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36098581-2	chr1	36098481	36098681	+	700.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_015818, intron 1 of 1)	intron (NM_015818, intron 1 of 1)	30181.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-84102233-2	chr17	84102133	84102333	+	774.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23573.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-45788624-2	chr19	45788524	45788724	+	565.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5071.0	NM_023799	76055.0	Mm.122725	NM_023799	ENSMUSG00000025220	Mgea5	Hy5|Ncoat|OGA	meningioma expressed antigen 5 (hyaluronidase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-12910369-4	chr7	12910278	12910478	+	965.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11933.0	NM_009095	20103.0	Mm.5291	NM_009095	ENSMUSG00000012848	Rps5	AA617411	ribosomal protein S5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-39518606-2	chr18	39518506	39518706	+	630.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31361.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-156455282-3	chr1	156455196	156455396	+	931.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009230, intron 3 of 15)	ORR1B1|LTR|ERVL-MaLR	19032.0	NM_009230	20652.0	Mm.28099	NM_009230	ENSMUSG00000026600	Soat1	8430426K15Rik|ACAT-1|AW550831|Acact|ald|hid	sterol O-acyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-67813987-7	chr13	67813882	67814082	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198322, intron 1 of 3)	CpG	166.0	NM_198322	212569.0	Mm.358842	NM_198322	ENSMUSG00000030446	Zfp273	6820416H06Rik|Rslcan1	zinc finger protein 273	protein-coding	6.26615739774046	6.2191075235013	6.56188792232122	5.97331417631736	6.08388022120152	5.24044659304777	6.04947631816786	5.8577001798431	-0.455766157198813	0.0683102621617945	0.392146662879048
Merged-chr1-131138292-4	chr1	131138125	131138325	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145508)	promoter-TSS (NM_145508)	9.0	NM_145508	226419.0	Mm.39299	NM_145508	ENSMUSG00000016526	Dyrk3	BC006704	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-37420833-4	chr9	37420732	37420932	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164767, intron 17 of 27)	CpG	12343.0	NM_001164767	19649.0	Mm.212826	NM_011248	ENSMUSG00000032128	Robo3	Rbig1|Rig-1|Rig1|Robo3a|Robo3b	roundabout guidance receptor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70057135-4	chr14	70057025	70057225	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028560, intron 6 of 6)	intron (NM_028560, intron 6 of 6)	-20320.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-94533366-2	chr17	94533266	94533466	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	216653.0	NM_001357136	76781.0	Mm.139146	NM_176917	ENSMUSG00000055660	Mettl4	2410198H06Rik|A730091E08Rik|AV296509|HsT661	methyltransferase like 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150587299-2	chr4	150587199	150587399	+	987.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 12 of 22)	ID_B1|SINE|B4	64875.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126096805-2	chr7	126096705	126096905	+	918.2000119999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14394.0	NM_001358885	269994.0	Mm.39599	NM_001101488	ENSMUSG00000046182	Gsg1l	AI852434|C230098I05Rik|G630023A01Rik|Gm637|g1l	GSG1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52585195-4	chr13	52585040	52585240	+	995.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198977, intron 1 of 13)	intron (NM_001198977, intron 1 of 13)	1703.0	NM_001198977	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36017135-2	chr18	36017035	36017235	+	730.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001167891)	TTS (NM_001167891)	52305.0	NR_110349	74002.0	Mm.196944	NM_028707	ENSMUSG00000024347	Psd2	6330404E20Rik|AW125584|EFA6C	pleckstrin and Sec7 domain containing 2	protein-coding	1.23459391830456	2.38329349976598	3.0463794531965	2.35241979924067	2.12907201844637	2.40175242567106	3.07036731538524	1.55643134631239	-0.00108112954974614	0.999099880296769	0.999599763492381
Merged-chr15-97449170-4	chr15	97449067	97449267	+	880.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-201880.0	NM_001164602	105827.0	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-60934980-1	chr18	60934880	60935080	+	551.0	f1_c57bl6.idr	intron (NM_177407, intron 1 of 17)	intron (NM_177407, intron 1 of 17)	9348.0	NM_177407	12322.0	Mm.131530	NM_009792	ENSMUSG00000024617	Camk2a	CaMKII|R74975|mKIAA0968	calcium/calmodulin-dependent protein kinase II alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-35068473-3	chr8	35068369	35068569	+	987.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	-102779.0	NM_175091	21951.0	Mm.88364	NM_175091	ENSMUSG00000031529	Tnks	4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	protein-coding	3.12395987434908	1.9542802488906	2.49643341392359	3.74653393307501	3.35979532706331	2.2199865842985	3.24752969802328	4.20871875607318	0.691672728313445	0.347826284532737	0.84779281761056
Merged-chr12-99967278-4	chr12	99967164	99967364	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164426, intron 2 of 2)	intron (NM_001164426, intron 2 of 2)	2765.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-84595652-2	chr2	84595552	84595752	+	727.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53828.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-88870055-2	chr15	88869955	88870155	+	663.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	7861.0	NM_145478	223775.0	Mm.400129	NM_145478	ENSMUSG00000035828	Pim3	BC026639|Kid1	proviral integration site 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-24447507-4	chr13	24447413	24447613	+	925.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111110, intron 11 of 16)	L1MEf|LINE|L1	32391.0	NM_001284520	12763.0	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-60712023-1	chr13	60711923	60712123	+	635.0	f1_balb.idr	intron (NM_134062, intron 3 of 26)	intron (NM_134062, intron 3 of 26)	74341.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	0.892355252203577	0.842569984639518	0.335031615763862	0.329485905587333	0.713158626300847	0.975864402556991	0.336615164752824	0.330455452152515	-0.0523990084456732	0.977738347241552	1
Merged-chr1-91091715-1	chr1	91091615	91091815	+	648.0	f0_balb.idr	intron (NM_008515, intron 9 of 22)	intron (NM_008515, intron 9 of 22)	38271.0	NM_001310732	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-113615849-2	chr5	113615749	113615949	+	665.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008153, intron 2 of 2)	ORR1D1|LTR|ERVL-MaLR	27754.0	NM_001359060	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-30595109-2	chr16	30595009	30595209	+	551.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2c|LINE|L2	-4614.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-23283187-4	chr16	23283087	23283287	+	723.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252505, intron 2 of 7)	MTB_Mm|LTR|ERVL-MaLR	-7283.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-25573559-2	chr9	25573459	25573659	+	650.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 3 of 7)	intron (NM_026189, intron 3 of 7)	91962.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-131992529-2	chr2	131992429	131992629	+	844.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_175445)	TTS (NM_175445)	37459.0	NM_175445	215653.0	Mm.204737	NM_175445	ENSMUSG00000027339	Rassf2	3830431H01Rik|9030412M04Rik|AI852669|AW495050	Ras association (RalGDS/AF-6) domain family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-50208895-2	chr11	50208795	50208995	+	885.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290769, intron 1 of 7)	B3A|SINE|B2	1925.0	NM_001290769	18412.0	Mm.40828	NM_011018	ENSMUSG00000015837	Sqstm1	A170|OSF-6|Osi|STAP|STONE14|p62	sequestosome 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76908302-2	chr15	76908202	76908402	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	4231.0	NM_012053	26961.0	Mm.30066	NM_012053	ENSMUSG00000003970	Rpl8	-	ribosomal protein L8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-99141343-4	chr3	99141169	99141369	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027462, intron 1 of 5)	CpG	179.0	NM_027462	70560.0	Mm.316754	NM_027462	ENSMUSG00000004233	Wars2	5730427B17Rik|9430020O07Rik|AI413375|TrpRS	tryptophanyl tRNA synthetase 2 (mitochondrial)	protein-coding	2.49975495144425	3.23681654808575	2.58809175701265	2.75364758975704	3.19975467466954	3.63894714917555	1.87411839675872	3.05720598710679	0.516114087931188	0.47615365026242	0.927406040011522
Merged-chr18-4264352-2	chr18	4264252	4264452	+	630.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	88601.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-114131632-4	chr5	114131529	114131729	+	962.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040691, intron 2 of 6)	CpG	473.0	NM_011677	22256.0	Mm.1393	NM_011677	ENSMUSG00000029591	Ung	UNG1|UNG2	uracil DNA glycosylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-43472173-4	chr1	43472046	43472246	+	888.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010879, intron 1 of 4)	intron (NM_010879, intron 1 of 4)	26395.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-57486302-4	chr10	57486197	57486397	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045353)	promoter-TSS (NR_045353)	56.0	NR_045353	74928.0	Mm.416643	NR_045353	ENSMUSG00000097370	4930467K11Rik	-	RIKEN cDNA 4930467K11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-49043210-2	chr13	49043110	49043310	+	591.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290313, intron 27 of 29)	intron (NM_001290313, intron 27 of 29)	75098.0	NR_015601	68128.0	Mm.426304	NR_015601		Fam120aos	C030044B11Rik	family with sequence similarity 120A, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-66863937-3	chr1	66863849	66864049	+	818.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007381)	promoter-TSS (NM_007381)	-640.0	NM_007381	11363.0	Mm.2445	NM_007381	ENSMUSG00000026003	Acadl	AA960361|AU018452|C79855|LCAD	acyl-Coenzyme A dehydrogenase, long-chain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-36577260-1	chr5	36577160	36577360	+	617.0	f1_c57bl6.idr	intron (NM_001113362, intron 2 of 14)	intron (NM_001113362, intron 2 of 14)	5137.0	NM_133910	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	-0.493704461970091	-0.856012208689772	-0.861665239843445	-0.863959728756569	-0.867195858719446	-0.356270977638719	-0.861008654254567	-0.863559148558191	0.555099020488173	0.856610390725557	1
Merged-chr2-153484761-2	chr2	153484661	153484861	+	886.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001134300, intron 1 of 10)	intron (NM_001134300, intron 1 of 10)	-40282.0	NM_001001986	329540.0	Mm.50600	NM_001001986	ENSMUSG00000061411	Nol4l	4931410H15|8430427H17Rik|AI429157|Gm1636	nucleolar protein 4-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-61558860-4	chr8	61558748	61558948	+	890.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293772, intron 10 of 21)	intron (NM_001293772, intron 10 of 21)	32321.0	NM_001293774	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-82847171-4	chr18	82847079	82847279	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8718.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-89430888-3	chr6	89430751	89430951	+	923.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167736, intron 4 of 6)	ORR1F|LTR|ERVL-MaLR	-68238.0	NM_008881	18844.0	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-98505759-2	chr15	98505659	98505859	+	904.8333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8285.0	NM_001001807	258502.0	Mm.377539	NM_001001807	ENSMUSG00000054036	Olfr279	MOR122-1|Olfr234|Olfr234-ps1|Olfr279-ps1	olfactory receptor 279	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-97124187-2	chr7	97124087	97124287	+	769.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162477, intron 1 of 9)	intron (NM_001162477, intron 1 of 9)	42436.0	NM_010248	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-33730830-4	chr8	33730710	33730910	+	992.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1104.0	NM_001167921	68153.0	Mm.286104	NM_026584	ENSMUSG00000031585	Gtf2e2	34kDa|AI462509|C330006J08Rik	general transcription factor II E, polypeptide 2 (beta subunit)	protein-coding	4.72723213457173	2.25268809248564	4.00076818657474	4.12885452205756	4.20036499225955	4.16486545043154	4.03123718759909	4.30262953984547	0.173176704639324	0.746238216494786	0.998431161219273
Merged-chr1-170919390-2	chr1	170919290	170919490	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001160215, intron 4 of 4)	ORR1B2|LTR|ERVL-MaLR	-6449.0	NM_001029984	435653.0	Mm.337931	NM_001029984	ENSMUSG00000070524	Fcrlb	FREB-2|FREB2|FcRL2|Fcrlm2|Fcry|mFCRL2	Fc receptor-like B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-36888502-3	chr15	36888400	36888600	+	634.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20A4|LTR|ERVK	-91571.0	NM_001253806	22631.0	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53395073-1	chr4	53394973	53395173	+	671.0	f0_balb.idr	Intergenic	Intergenic	-45340.0	NM_001159633	100434.0	Mm.482207	NM_133891	ENSMUSG00000028412	Slc44a1	2210409B22Rik|4833416H08Rik|AW547365|CHTL1|CTL1|Cdw92	solute carrier family 44, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36760787-2	chr18	36760687	36760887	+	550.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_154585, intron 1 of 6)	B4A|SINE|B4	565.0	NR_154585	67936.0	Mm.271719	NM_026464	ENSMUSG00000042660	Wdr55	2410080P20Rik|C80692	WD repeat domain 55	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94604482-2	chr10	94604382	94604582	+	970.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR78|LTR|ERV1	-18283.0	NR_106070	102466817.0		NR_106070	ENSMUSG00000098544	Mir7211	Gm27536|mmu-mir-7211	microRNA 7211	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-118490841-4	chr2	118490721	118490921	+	986.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11125.0	NM_009273	20813.0	Mm.363404	NM_009273	ENSMUSG00000009549	Srp14	14kDa|AW536328	signal recognition particle 14	protein-coding	4.42312143770965	3.55076460092345	3.24363741970353	4.24869546747186	2.90336560701376	2.88820849049139	2.24296157575232	3.3492395582314	-1.62095237738332	0.00663813978163343	0.0821641001719786
Merged-chr8-126592147-4	chr8	126592058	126592258	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164598, intron 1 of 1)	intron (NM_001164598, intron 1 of 1)	1278.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120819924-2	chr8	120819824	120820024	+	627.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	81285.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-53509727-4	chr5	53509624	53509824	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46055.0	NM_001080928	19664.0	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	3.38330252200635	3.02045203727588	3.52606277277988	3.28827910322057	3.21920009051942	2.91989079463832	3.40720727990287	1.60944308139535	-0.611669178953035	0.376964424569995	0.869940000691393
Merged-chr13-5803033-4	chr13	5802941	5803141	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55051.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27752258-2	chr2	27752158	27752358	+	806.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290481, intron 5 of 9)	intron (NM_001290481, intron 5 of 9)	41675.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-83518319-4	chr15	83518213	83518413	+	878.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357953, intron 1 of 11)	intron (NM_001357953, intron 1 of 11)	161.0	NM_001357953	319953.0	Mm.235007	NM_178869	ENSMUSG00000022442	Ttll1	6330444E16Rik|AV014541	tubulin tyrosine ligase-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65568103-3	chr9	65567959	65568159	+	843.388916	f1_balb.idr|f1_c57bl6.idr	intron (NM_153119, intron 2 of 5)	intron (NM_153119, intron 2 of 5)	12028.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	0.238585431240695	1.29888223144031	0.258542245741881	0.251115391458163	1.00109965721957	0.849083049037682	0.260649460567102	0.252419198949278	0.0726925622597622	0.970757412230358	1
Merged-chr3-96268075-2	chr3	96267975	96268175	+	548.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178215)	promoter-TSS (NM_178215)	-579.0	NM_178215	319154.0	Mm.383293	NM_178215	ENSMUSG00000074403	Hist2h3b	H3-615|H3-616	histone cluster 2, H3b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124128004-2	chr5	124127904	124128104	+	657.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289472, intron 14 of 24)	intron (NM_001289472, intron 14 of 24)	11896.0	NM_144509	65105.0	Mm.29430	NM_144509	ENSMUSG00000029404	Arl6ip4	AA408210|AA408365|Aip-4|Srp25	ADP-ribosylation factor-like 6 interacting protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-3707223-4	chr7	3707077	3707277	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_029767)	TTS (NM_029767)	3136.0	NM_029767	76846.0	Mm.13944	NM_029767	ENSMUSG00000006333	Rps9	3010033P07Rik|AL022771|AL022885	ribosomal protein S9	protein-coding	5.60543200605632	5.18659893572328	4.73439571848457	4.56064756017649	5.12525342609488	5.10005732784826	5.54247614371923	5.34582556330292	0.23202335777817	0.48266210105681	0.930327710476536
Merged-chr11-97604049-3	chr11	97603953	97604153	+	709.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045496, intron 1 of 3)	intron (NR_045496, intron 1 of 3)	5542.0	NR_045496	69729.0	Mm.233452	NR_045496	ENSMUSG00000085860	2410003L11Rik	-	RIKEN cDNA 2410003L11 gene	ncRNA	1.63377950734228	1.19606907239529	2.0356757715145	1.97677848750741	2.17188622236897	1.20152285739054	2.16575210006311	2.44712309805496	0.876416107812593	0.417591337199652	0.89746731497279
Merged-chr1-179587727-2	chr1	179587627	179587827	+	545.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146105, intron 2 of 10)	L1MB4|LINE|L1	41198.0	NM_146105	226744.0	Mm.87662	NM_146105	ENSMUSG00000038949	Cnst	9630058J23Rik	consortin, connexin sorting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-92831789-3	chr1	92831685	92831885	+	944.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_016696, exon 1 of 9)	5' UTR (NM_016696, exon 1 of 9)	140.0	NM_016696	14733.0	Mm.297976	NM_016696	ENSMUSG00000034220	Gpc1	AI462976	glypican 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101978683-4	chr15	101978593	101978793	+	970.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24406.0	NM_212487	332131.0	Mm.325105	NM_212487	ENSMUSG00000050463	Krt78	2310030B04Rik|Kb40	keratin 78	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-17027653-5	chr7	17027534	17027734	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011155, intron 1 of 12)	CpG	280.0	NM_011155	19060.0	Mm.3294	NM_011155	ENSMUSG00000003099	Ppp5c	AU020526|PP5	protein phosphatase 5, catalytic subunit	protein-coding	5.02191562789969	3.934362706895	5.29237662431066	4.90158293271285	5.44067487516684	4.55911655523398	5.09823368991698	4.88705180891	0.193944473459512	0.602478525161562	0.973565005745828
Merged-chr9-114742896-4	chr9	114742739	114742939	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026036, intron 3 of 3)	intron (NM_026036, intron 3 of 3)	11636.0	NM_026036	67213.0	Mm.28858	NM_026036	ENSMUSG00000032434	Cmtm6	2810051A14Rik|AA536733|Cklfsf6	CKLF-like MARVEL transmembrane domain containing 6	protein-coding	5.48465851377186	5.50261255305617	5.59924074477216	6.08006856055818	5.21284115298523	5.71470588497606	5.34706055132343	4.3986660534885	-0.517025456564744	0.103485916982337	0.500914100336688
Merged-chr7-3693665-4	chr7	3693584	3693784	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029934)	promoter-TSS (NM_029934)	74.0	NM_001164205	66078.0	Mm.379100	NM_024168	ENSMUSG00000035585	Tsen34	0610027F08Rik|Leng5	tRNA splicing endonuclease subunit 34	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-109913376-4	chr2	109913248	109913448	+	734.488098	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033473)	promoter-TSS (NR_033473)	-29.0	NR_033473	100038454.0	Mm.365649	NR_033473	ENSMUSG00000063751	Platr8	Gm13939	pluripotency associated transcript 8	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-80739084-4	chr18	80738979	80739179	+	969.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015805, intron 27 of 28)	intron (NM_015805, intron 27 of 28)	-26008.0	NM_001164110	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133413011-3	chr4	133412892	133413092	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016981, intron 2 of 11)	B1_Mus1|SINE|Alu	43216.0	NR_039582	100628620.0		NR_039582	ENSMUSG00000092745	Mir5122	mmu-mir-5122|mu-mir-5122	microRNA 5122	ncRNA	3.12831087041638	2.57668786198468	2.81519993860254	3.71329961811426	4.61849734629872	3.46265849169145	3.44118348838744	4.9281091589018	1.63892427187061	0.00490113292900444	0.0658743012123173
Merged-chr4-95784358-4	chr4	95784267	95784467	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029347, intron 8 of 10)	L2|LINE|L2	182668.0	NR_045777	319247.0	Mm.473527	NM_175680	ENSMUSG00000044125	9530080O11Rik	-	RIKEN cDNA 9530080O11 gene	ncRNA	4.11303372436131	3.43627088271746	4.23016562667141	4.64064773408576	3.34693455463816	4.15368512888094	3.09691785390763	4.51007118550835	-0.375888010039403	0.466572250932267	0.923142128411171
Merged-chr8-22167218-2	chr8	22167106	22167306	+	669.5	f0_balb.idr|f1_balb.idr	promoter-TSS (NM_011848)	promoter-TSS (NM_011848)	-771.0	NM_011848	23954.0	Mm.41413	NM_011848	ENSMUSG00000031478	Nek3	-	NIMA (never in mitosis gene a)-related expressed kinase 3	protein-coding	2.8742788327427	3.12963590551119	2.92884971956709	2.74347464471266	3.30476031441689	1.65091433769673	3.37232259062146	2.64439094948556	-0.00887066585610157	0.990451535570472	0.998431161219273
Merged-chr4-145300340-4	chr4	145300256	145300456	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009401, intron 2 of 12)	intron (NM_009401, intron 2 of 12)	14791.0	NM_009401	21941.0	Mm.12810	NM_009401	ENSMUSG00000028602	Tnfrsf8	Cd30|D1S166E|Ki|Ki-1	tumor necrosis factor receptor superfamily, member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-42080779-2	chr19	42080679	42080879	+	771.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198108, intron 1 of 4)	intron (NM_198108, intron 1 of 4)	5591.0	NM_198108	226123.0	Mm.259441	NM_198108	ENSMUSG00000049670	Morn4	-	MORN repeat containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114668515-4	chr11	114668399	114668599	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023372)	promoter-TSS (NM_023372)	-44.0	NM_023372	67671.0	Mm.238817	NM_023372	ENSMUSG00000057322	Rpl38	0610025G13Rik|Rbt|Ts|Tss	ribosomal protein L38	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70545290-4	chr14	70545194	70545394	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_180588)	promoter-TSS (NM_180588)	43.0	NM_180588	72549.0	Mm.46742	NM_180588	ENSMUSG00000033589	Reep4	2700029E10Rik	receptor accessory protein 4	protein-coding	3.81272754294865	3.69325008897547	3.12153843110237	1.63290073478435	4.01728955126899	3.86490826167203	3.34783480698195	2.93405874551667	0.469221892019783	0.4915064340387	0.934662013249628
Merged-chr11-96872720-2	chr11	96872620	96872820	+	678.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22327.0	NR_029562	387170.0		NR_029562	ENSMUSG00000065515	Mir152	Mirn152|mir-152|mmu-mir-152	microRNA 152	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-62165279-4	chr15	62165180	62165380	+	919.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_003368, intron 4 of 8)	intron (NR_003368, intron 4 of 8)	54171.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-17807602-4	chr16	17807446	17807646	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_153790, exon 11 of 11)	exon (NM_153790, exon 11 of 11)	10264.0	NM_153790	224024.0	Mm.194950	NM_153790	ENSMUSG00000012017	Scarf2	NSR1|SREC-II|SRECRP-1|Scatf1|Srec2|SrecII	scavenger receptor class F, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-146030391-4	chr3	146030283	146030483	+	904.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42513.0	NM_001166064	214804.0	Mm.268854	NM_001166064	ENSMUSG00000036863	Syde2	C430017H16Rik	synapse defective 1, Rho GTPase, homolog 2 (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-70746520-1	chr17	70746420	70746620	+	568.0	f1_balb.idr	intron (NM_001347411, intron 9 of 14)	intron (NM_001347411, intron 9 of 14)	100257.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0.353176275606035	0.237297178114861	0.657127449529496	0.380176817227817	0.671514672940307	0.23852960941504	0.666259484845993	0.383005465014751	0.625256449417983	0.724362892901289	1
Merged-chr9-7846942-4	chr9	7846846	7847046	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9889.0	NM_007465	11797.0	Mm.335659	NM_007465	ENSMUSG00000057367	Birc2	AW146227|Api1|Api2|Birc3|C-IAP1|C330006D17Rik|HIAP1|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF48|cIAP1|cIAP2|mcIAP1	baculoviral IAP repeat-containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-64747360-3	chr14	64747253	64747453	+	773.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081177, intron 17 of 39)	CT-rich|Low_complexity|Low_complexity	94822.0	NM_001081177	16554.0	Mm.23611	NM_001081177	ENSMUSG00000060012	Kif13b	5330429L19Rik|6030414C01|AI429803|C130021D12Rik|GAKIN	kinesin family member 13B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95706432-4	chr3	95706326	95706526	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-18509.0	NM_001301705	229595.0	Mm.490574	NM_144899	ENSMUSG00000015850	Adamtsl4	ADAMTSL-4|Tsrc1	ADAMTS-like 4	protein-coding	3.68943407572746	3.61489384435064	2.67628393366869	4.13530625287781	3.7188741983992	3.64125566607082	2.69938114489892	4.15466713593694	0.0359374260577469	0.950913728067877	0.998431161219273
Merged-chr3-127796488-4	chr3	127796394	127796594	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356430, intron 2 of 2)	intron (NM_001356430, intron 2 of 2)	5837.0	NM_001356430	211550.0	Mm.31852	NM_145133	ENSMUSG00000046688	Tifa	T2bp	TRAF-interacting protein with forkhead-associated domain	protein-coding	4.46672062101594	4.63262946249713	3.64983809355466	4.80107914646024	4.50086867048166	4.76491681360273	5.19388167742155	4.4398827070879	0.37565092137048	0.346342306961818	0.8471218399554
Merged-chr4-117156072-4	chr4	117155992	117156192	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009098)	promoter-TSS (NM_009098)	40.0	NM_009098	20116.0	Mm.260904	NM_009098	ENSMUSG00000047675	Rps8	-	ribosomal protein S8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-47526594-2	chr6	47526494	47526694	+	584.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_012042)	TTS (NM_012042)	68436.0	NM_001146689	14056.0	Mm.246688	NM_007971	ENSMUSG00000029687	Ezh2	Enx-1|Enx1h|KMT6|mKIAA4065	enhancer of zeste 2 polycomb repressive complex 2 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-80263084-4	chr8	80262985	80263185	+	928.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-205077.0	NM_020259	15245.0	Mm.254493	NM_020259	ENSMUSG00000064325	Hhip	Hhip1	Hedgehog-interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-22410944-4	chr17	22410829	22411029	+	843.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-13273.0	NM_001331197	74149.0	Mm.30767	NM_198003	ENSMUSG00000071266	Zfp946	1300003B13Rik	zinc finger protein 946	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-63131333-2	chr14	63131233	63131433	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007798, intron 1 of 9)	intron (NM_007798, intron 1 of 9)	8871.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-63659887-3	chr1	63659792	63659992	+	655.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081658, intron 9 of 14)	intron (NM_001081658, intron 9 of 14)	27035.0	NM_001081658	241073.0	Mm.297680	NM_001081658	ENSMUSG00000069085	Dytn	Gm215	dystrotelin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-54721216-3	chr18	54721093	54721293	+	860.988892	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	109449.0	NR_045400	328957.0	Mm.402781	NR_045400		9330117O12Rik	9330117O12	RIKEN cDNA 9330117O12 gene	ncRNA	1.30624297960218	0.99205273001334	1.73912186198473	1.68440110048783	1.47020251792447	0.997289910412476	2.70948106076423	1.82009356504566	1.2837821126279	0.278773092336473	0.782334674124706
Merged-chr1-46927265-4	chr1	46927166	46927366	+	966.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-1490.0	NM_001356417	227059.0	Mm.233889	NM_172653	ENSMUSG00000025986	Slc39a10	2900042E17Rik|5430433I10|Zip10|mKIAA1265	solute carrier family 39 (zinc transporter), member 10	protein-coding	1.77712361009787	3.24375121277894	2.66438204128157	3.34964220773802	5.51977435270601	4.12748876971527	5.15277231575604	4.5034595739365	2.81929195876317	2.70741754758868e-07	2.13707866684007e-05
Merged-chr4-43643271-2	chr4	43643171	43643371	+	718.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355466, intron 8 of 20)	intron (NM_001355466, intron 8 of 20)	10323.0	NM_001290462	433700.0	Mm.331569	NM_001007463	ENSMUSG00000066196	Spag8	MH-SPAG8|SMP-1	sperm associated antigen 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-32512100-4	chr6	32512007	32512207	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040277, intron 1 of 1)	intron (NR_040277, intron 1 of 1)	966.0	NR_040277	319849.0	Mm.440860	NR_040277	ENSMUSG00000086763	Plxna4os1	B230378P21Rik	plexin A4, opposite strand 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-144259122-2	chr5	144259022	144259222	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163709, intron 2 of 2)	intron (NM_001163709, intron 2 of 2)	3897.0	NM_018772	55950.0	Mm.38011	NM_018772	ENSMUSG00000047843	Bri3	I3	brain protein I3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90575245-4	chr2	90575124	90575324	+	941.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	MIRc|SINE|MIR	5423.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19022436-2	chr7	19022336	19022536	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008260, intron 1 of 1)	intron (NM_008260, intron 1 of 1)	1103.0	NM_008260	15377.0	Mm.42260	NM_008260	ENSMUSG00000040891	Foxa3	Hnf-3g|Hnf3g|Tcf-3g|Tcf3g	forkhead box A3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-142932648-2	chr3	142932548	142932748	+	573.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	50153.0	NR_152127	320229.0	Mm.187582	NR_152127		9530052C20Rik	-	RIKEN cDNA 9530052C20 gene	ncRNA	-0.802593673557486	-0.793094718163527	-0.341243695287107	-0.798614554876962	-0.802002397560642	-0.791090896558683	-0.332078011335404	-0.79819523297655	0.040958530317021	0.989184000390448	1
Merged-chr13-20184865-4	chr13	20184800	20185000	+	829.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	94393.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-73057027-4	chr14	73056915	73057115	+	940.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-7901.0	NM_001162412	70086.0	Mm.158324	NM_133720	ENSMUSG00000033470	Cysltr2	2300001H05Rik|CYSLT2R|Cltr2|Cyslt2	cysteinyl leukotriene receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-55980376-3	chr10	55980287	55980487	+	813.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-126530.0	NM_001163833	73390.0	Mm.181475	NM_133751	ENSMUSG00000047669	Msl3l2	1700060H10Rik	MSL3 like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-22677499-2	chr11	22677399	22677599	+	880.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	165216.0	NM_153596	103765.0	Mm.221274	NM_153596	ENSMUSG00000049904	Tmem17	AI503894|AW049890	transmembrane protein 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-67118560-4	chr15	67118463	67118663	+	987.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009177, intron 3 of 8)	ORR1E|LTR|ERVL-MaLR	58319.0	NM_009177	20442.0	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	3.45081570682962	2.65720304072059	2.56034451220255	2.63053833169511	3.84144307189299	3.88239008646625	2.58220802211699	3.97334305771388	1.25084449427205	0.0491151523010759	0.322600509475351
Merged-chr7-90444176-1	chr7	90444076	90444276	+	542.0	f1_c57bl6.idr	non-coding (NR_073436, exon 1 of 2)	non-coding (NR_073436, exon 1 of 2)	1395.0	NR_073438	233490.0	Mm.29496	NM_145151	ENSMUSG00000051451	Crebzf	1110034C16Rik|6330417B10Rik|LAZip|LAZipII|SMILE|Zf	CREB/ATF bZIP transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-25820001-2	chr17	25819901	25820101	+	771.125	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001164225, exon 6 of 6)	3' UTR (NM_001164225, exon 6 of 6)	-3626.0	NM_173741	268933.0	Mm.95512	NM_173741	ENSMUSG00000025737	Wdr24	BC037651	WD repeat domain 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-57667752-2	chr6	57667652	57667852	+	778.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	24326.0	NM_025574	66459.0	Mm.44201	NM_025574	ENSMUSG00000043162	Pyurf	2610022G08Rik|AI847956|Prey	Pigy upstream reading frame	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-92000987-4	chr5	92000894	92001094	+	947.479126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13521.0	NM_001177577	381651.0	Mm.332494	NM_001177577	ENSMUSG00000096035	Odaph	Gm1045|Gm1045-a|Gm1045-b	odontogenesis associated phosphoprotein	protein-coding	1.18234769174955	1.28343214307754	2.74973707222997	2.59500383205037	2.12722686756786	2.13140832516613	2.31311002451575	2.12321896957266	0.00461631277619052	0.996465801821089	0.999130594204364
Merged-chr6-128931003-1	chr6	128930903	128931103	+	709.0	f0_balb.idr	TTS (NR_106107)	TTS (NR_106107)	842.0	NR_106107	102465757.0		NR_106107	ENSMUSG00000098359	Mir7649	mmu-mir-7649	microRNA 7649	ncRNA	0.486712253809811	0.0461522092542422	0.037049296975841	0.0299115511810049	0.362665477982208	0.0481818892135735	1.37699616016803	0.0311659365266805	2.41794519824661	0.242848781788895	1
Merged-chr7-143048132-4	chr7	143048018	143048218	+	950.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110355, intron 1 of 4)	MTC|LTR|ERVL-MaLR	-4632.0	NM_133655	12520.0	Mm.806	NM_133655	ENSMUSG00000037706	Cd81	Tapa-1|Tapa1|Tspan28	CD81 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-53324659-4	chr11	53324556	53324756	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026479)	promoter-TSS (NM_026479)	-33.0	NM_026479	67966.0	Mm.288072	NM_026479	ENSMUSG00000018239	Zcchc10	2410141K03Rik|AA675321|D11Ertd416e	zinc finger, CCHC domain containing 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-37006565-4	chr15	37006474	37006674	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026521, intron 1 of 3)	intron (NM_026521, intron 1 of 3)	828.0	NM_026521	68036.0	Mm.371631	NM_026521	ENSMUSG00000062397	Zfp706	3110006P09Rik|AA793007|AW536850|C77232|Znf706	zinc finger protein 706	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89860546-2	chr3	89860446	89860646	+	604.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29176.0	NM_172530	214547.0	Mm.225	NM_172530	ENSMUSG00000046280	She	9430022A14	src homology 2 domain-containing transforming protein E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-90396387-4	chr16	90396275	90396475	+	966.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015755, intron 1 of 10)	intron (NM_015755, intron 1 of 10)	9978.0	NM_015755	26559.0	Mm.125874	NM_015755	ENSMUSG00000053414	Hunk	Bstk1|Mak-v	hormonally upregulated Neu-associated kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-33687668-4	chr15	33687520	33687720	+	799.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001085421, exon 1 of 1)	exon (NM_001085421, exon 1 of 1)	263.0	NM_001085421	239364.0	Mm.60794	NM_001085421	ENSMUSG00000038984	Tspyl5	6330530B20|E130308C19Rik	testis-specific protein, Y-encoded-like 5	protein-coding	-1.14149542847138	-0.33100028091332	-1.12720875772362	-1.13728867753953	-1.14086750656251	-1.11193125150289	-1.12436624874263	-1.1356767669541	-2.98824766641611	0.369648585513947	1
Merged-chr1-165667615-4	chr1	165667513	165667713	+	992.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038846, intron 1 of 5)	intron (NM_001038846, intron 1 of 5)	-33072.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83730021-2	chr11	83729921	83730121	+	557.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16919.0	NM_183249	66107.0	Mm.902	NM_183249	ENSMUSG00000051748	Wfdc21	1100001G20Rik|Wdnm1-like	WAP four-disulfide core domain 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-134455537-4	chr1	134455402	134455602	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153128)	promoter-TSS (NM_153128)	-29.0	NM_153128	240756.0	Mm.87398	NM_153128	ENSMUSG00000026455	Klhl12	C3ip1	kelch-like 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-103039379-2	chr14	103039279	103039479	+	602.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5576.0	NR_045657	71264.0	Mm.399572	NR_045657	ENSMUSG00000114980	4933432I03Rik	-	RIKEN cDNA 4933432I03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-137718130-4	chr5	137718000	137718200	+	726.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21702.0	NM_175521	243300.0	Mm.74750	NM_175521	ENSMUSG00000045348	Nyap1	6430598A04Rik	neuronal tyrosine-phosphorylated phosphoinositide 3-kinase adaptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-24972137-4	chr7	24972069	24972269	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010261, exon 2 of 5)	exon (NM_010261, exon 2 of 5)	559.0	NM_010261	14470.0	Mm.22473	NM_010261	ENSMUSG00000003380	Rabac1	2310040I06Rik|Gbpap1|PRA1|prenylin	Rab acceptor 1 (prenylated)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-6288601-2	chr7	6288501	6288701	+	571.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001024928, intron 1 of 4)	intron (NM_001024928, intron 1 of 4)	2021.0	NM_001024928	384763.0	Mm.276279	NM_001024928	ENSMUSG00000054893	Zfp667	A830025F02Rik|Mip1|ZNF667	zinc finger protein 667	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-9682520-4	chr9	9682428	9682628	+	827.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033359, intron 17 of 20)	B4A|SINE|B4	-211903.0	NR_105745	102466147.0		NR_105745	ENSMUSG00000098408	Mir6237	Gm27411|mmu-mir-6237	microRNA 6237	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-121179058-4	chr2	121178969	121179169	+	983.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110985, intron 6 of 18)	L1_Mur3|LINE|L1	7901.0	NM_001290824	51885.0	Mm.383499	NM_153387	ENSMUSG00000027263	Tubgcp4	4932441P04Rik|76p|D2Ertd435e|GCP-4	tubulin, gamma complex associated protein 4	protein-coding	3.93429328590833	3.81953242119044	2.33112827555728	4.26828681076135	3.91607527460653	3.84692048463434	3.26627375097466	3.87899546600516	-0.0187117020480919	0.973541019254323	0.998431161219273
Merged-chr12-110498746-4	chr12	110498643	110498843	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081457, intron 1 of 12)	intron (NM_001081457, intron 1 of 12)	13004.0	NM_012023	26931.0	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-87741915-1	chr17	87741815	87742015	+	895.0	f1_c57bl6.idr	Intergenic	Intergenic	56079.0	NM_199251	210741.0	Mm.312046	NM_199251	ENSMUSG00000050138	Kcnk12	mntk1	potassium channel, subfamily K, member 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83416519-1	chr6	83416419	83416619	+	617.5	f0_balb.idr	intron (NM_001347313, intron 3 of 11)	intron (NM_001347313, intron 3 of 11)	-15417.0	NR_105793	102465194.0		NR_105793	ENSMUSG00000099045	Mir6374	Gm27292|mmu-mir-6374	microRNA 6374	ncRNA	-0.542707213331262	-1.0782195565565	-1.08937350298794	-1.09644248016066	-0.953371977117728	-1.07580244983501	-1.08684849400341	-1.09610392398499	-1.71150422158612	0.598216698606419	1
Merged-chr14-14097723-2	chr14	14097623	14097823	+	601.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_139227, intron 10 of 11)	intron (NM_139227, intron 10 of 11)	23181.0	NM_025550	66413.0	Mm.27591	NM_025550	ENSMUSG00000021737	Psmd6	2400006A19Rik	proteasome (prosome, macropain) 26S subunit, non-ATPase, 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126842856-2	chr8	126842756	126842956	+	613.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6164.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-184049239-4	chr1	184049129	184049329	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022019, intron 2 of 3)	intron (NM_022019, intron 2 of 3)	14848.0	NM_022019	63953.0	Mm.404024	NM_022019	ENSMUSG00000039384	Dusp10	2610306G15Rik|AI158871|MKP-5|MKP5	dual specificity phosphatase 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-29148725-3	chr11	29148614	29148814	+	579.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027869, intron 18 of 27)	intron (NM_027869, intron 18 of 27)	17963.0	NM_027869	71701.0	Mm.211131	NM_027869	ENSMUSG00000020464	Pnpt1	1200003F12Rik|Old35|PNPase|Pnptl1	polyribonucleotide nucleotidyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-108895814-4	chr3	108895722	108895922	+	970.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5814.0	NM_001165965	320181.0	Mm.244233	NM_177091	ENSMUSG00000045326	Fndc7	E230011A21Rik	fibronectin type III domain containing 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-89425101-2	chr6	89425001	89425201	+	720.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001167736, intron 4 of 6)	intron (NM_001167736, intron 4 of 6)	-62488.0	NM_008881	18844.0	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-143069233-4	chr7	143069145	143069345	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001115085)	promoter-TSS (NM_001115085)	-123.0	NM_020285	56844.0	Mm.139675	NM_020285	ENSMUSG00000045752	Tssc4	AA241958|ESTM671070	tumor-suppressing subchromosomal transferable fragment 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-108723363-4	chr8	108723274	108723474	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007496, intron 1 of 9)	intron (NM_007496, intron 1 of 9)	8730.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-75655406-4	chr7	75655289	75655489	+	834.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 8 of 36)	intron (NM_029332, intron 8 of 36)	-192949.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-69373914-3	chr12	69373807	69374007	+	758.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007481, exon 2 of 2)	3' UTR (NM_007481, exon 2 of 2)	1757.0	NM_007481	11845.0	Mm.27308	NM_007481	ENSMUSG00000044147	Arf6	AI788669|AW496366	ADP-ribosylation factor 6	protein-coding	1.32611169668134	0.449230276144927	0.438403526984202	0.429929625579021	0.594880018122641	1.39825592023077	1.11103355434614	0.431417876520598	0.913620599328697	0.603710187964281	0.973589491466885
Merged-chr16-20829173-3	chr16	20829073	20829273	+	807.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-94662.0	NM_009379	21832.0	Mm.3943	NM_009379	ENSMUSG00000022847	Thpo	Mgdf|Ml|Mpllg|Tpo	thrombopoietin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-83548732-2	chr17	83548632	83548832	+	586.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34399.0	NM_001159529	20463.0	Mm.30072	NM_009187	ENSMUSG00000024248	Cox7a2l	COX7AR|COX7RP|EB1|SIG-81|SIG81|Silg81	cytochrome c oxidase subunit VIIa polypeptide 2-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-29886779-2	chr11	29886682	29886882	+	841.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146016, intron 5 of 41)	L1_Mus2|LINE|L1	-61114.0	NM_176829	216622.0	Mm.443260	NM_176829	ENSMUSG00000078157	4931440F15Rik	Fem1ab	RIKEN cDNA 4931440F15 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-75712741-2	chr10	75712641	75712841	+	594.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172549, intron 26 of 36)	intron (NM_172549, intron 26 of 36)	51616.0	NM_172549	104248.0	Mm.257404	NM_172549	ENSMUSG00000020196	Cabin1	A330070M20Rik|Cain|Ppp3in	calcineurin binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-97474892-2	chr16	97474792	97474992	+	564.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_020622, intron 7 of 7)	intron (NM_020622, intron 7 of 7)	-11986.0	NR_003520	17857.0	Mm.33996	NM_010846	ENSMUSG00000000386	Mx1	AI893580|Mx|Mx-1	MX dynamin-like GTPase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-104002536-4	chr9	104002432	104002632	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172460)	promoter-TSS (NM_172460)	-12.0	NM_028721	74025.0	Mm.479273	NM_028721	ENSMUSG00000032558	Nphp3	3632410F03Rik|AI550417|C230078J01|D330020E01Rik|pcy	nephronophthisis 3 (adolescent)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-56439106-2	chr8	56439006	56439206	+	570.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	45862.0	NR_131020	75123.0	Mm.72666	NR_131020	ENSMUSG00000110310	4930518J21Rik	-	RIKEN cDNA 4930518J21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-69722712-4	chr3	69722632	69722832	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133787, intron 2 of 15)	CpG-9222	677.0	NM_133787	97112.0	Mm.21062	NM_133787	ENSMUSG00000027787	Nmd3	C87860	NMD3 ribosome export adaptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-78261576-4	chr11	78261454	78261654	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001002004)	promoter-TSS (NM_001002004)	-200.0	NM_001002004	72503.0	Mm.237103	NM_001002004	ENSMUSG00000010277	2610507B11Rik	AU022687|D11Bhm178e|D11Bhm179e|E1|Kiaa0100|mKIAA0100	RIKEN cDNA 2610507B11 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-61983122-2	chr15	61983022	61983222	+	965.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2219.0	NM_001177354	17869.0	Mm.2444	NM_010849	ENSMUSG00000022346	Myc	AU016757|Myc2|Niard|Nird|bHLHe39	myelocytomatosis oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-84122312-2	chr17	84122212	84122412	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	43652.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-170976077-4	chr1	170975980	170976180	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010187)	promoter-TSS (NM_010187)	-9.0	NM_001077189	14130.0	Mm.425062	NM_010187	ENSMUSG00000026656	Fcgr2b	AI528646|CD32|F630109E10Rik|Fc[g]RII|FcgRII|Fcgr2|Fcgr2a|Fcr-2|Fcr-3|Ly-17|Ly-m20|LyM-1|Lym-1|fcRII	Fc receptor, IgG, low affinity IIb	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-75787566-4	chr7	75787529	75787729	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60709.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	2.36906465918478	2.66161547326575	1.58827349914525	1.55020177917804	2.1999175298834	1.86486443986403	2.6812259607152	2.59820603689612	0.54513029842957	0.552143208385494	0.959523840754686
Merged-chr14-31495854-2	chr14	31495754	31495954	+	709.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359848)	promoter-TSS (NM_001359848)	775.0	NM_028932	74427.0	Mm.491208	NM_028932	ENSMUSG00000021890	Eaf1	4933403C17Rik|AI666536	ELL associated factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-12476004-2	chr19	12475891	12476091	+	836.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_172442, intron 7 of 8)	intron (NM_172442, intron 7 of 8)	15212.0	NM_010821	17476.0	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	3.51749386715394	3.92657557925444	3.92770870773198	3.93696897066483	3.1736621918457	3.35694894919082	3.34685515126279	3.33614951075337	-0.811797995000706	0.109576066621283	0.518821486709608
Merged-chr4-132529483-4	chr4	132529409	132529609	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5905.0	NM_007512	11983.0	Mm.2171	NM_007512	ENSMUSG00000054428	Atpif1	Atpi|IF(1)|If1	ATPase inhibitory factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52583501-4	chr13	52583390	52583590	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001198977)	promoter-TSS (NM_001198977)	53.0	NM_001198977	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124373749-4	chr6	124373661	124373861	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9275.0	NR_131162	72268.0	Mm.420740	NR_131162		1700027F06Rik	-	RIKEN cDNA 1700027F06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-64334743-2	chr17	64334643	64334843	+	853.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-2860.0	NM_001025309	224938.0	Mm.489681	NM_144859	ENSMUSG00000024083	Pja2	AI447901|AL022700|Neurodap1|mKIAA0438	praja ring finger ubiquitin ligase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-109558822-7	chr5	109558705	109558905	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_016715, exon 1 of 8)	exon (NM_016715, exon 1 of 8)	188.0	NM_016715	57914.0	Mm.35771	NM_016715	ENSMUSG00000033467	Crlf2	CRLM2|Ly114|Tpte2|Tslpr	cytokine receptor-like factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-10975114-2	chr16	10975020	10975220	+	810.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019980, intron 1 of 3)	GSAT_MM|Satellite|Satellite	18001.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-29468172-4	chr6	29468061	29468261	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025381, intron 1 of 1)	intron (NM_025381, intron 1 of 1)	378.0	NM_025381	66144.0	Mm.371614	NM_025381	ENSMUSG00000004285	Atp6v1f	1110004G16Rik	ATPase, H+ transporting, lysosomal V1 subunit F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-112265664-4	chr5	112265549	112265749	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001312893, intron 4 of 5)	intron (NM_001312893, intron 4 of 5)	9829.0	NM_001312893	12960.0	Mm.29488	NM_023695	ENSMUSG00000029343	Crybb1	3110006K12Rik|BB1CRY	crystallin, beta B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-57755923-2	chr6	57755823	57756023	+	578.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_146168, intron 4 of 4)	intron (NM_146168, intron 4 of 4)	53468.0	NM_133737	71835.0	Mm.274904	NM_133737	ENSMUSG00000062190	Lancl2	1700003F10Rik	LanC (bacterial lantibiotic synthetase component C)-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4070925-4	chr19	4070816	4071016	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RodERV21-int|LTR|ERV1	-11469.0	NM_001362043	225884.0	Mm.440201	NM_144869	ENSMUSG00000058216	Gstp3	-	glutathione S-transferase pi 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-31058494-2	chr3	31058399	31058599	+	930.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	19533.0	NR_105975	102465610.0		NR_105975	ENSMUSG00000098890	Mir7008	Gm27752|mmu-mir-7008	microRNA 7008	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-103984247-4	chr11	103984110	103984310	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001304574, exon 5 of 5)	3' UTR (NM_001304574, exon 5 of 5)	17339.0	NM_007477	11841.0	Mm.5061	NM_007477	ENSMUSG00000062421	Arf2	-	ADP-ribosylation factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-45004080-2	chr19	45003980	45004180	+	961.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_011976)	TTS (NM_011976)	-1583.0	NM_001348254	226153.0	Mm.105585	NM_153796	ENSMUSG00000025209	Twnk	D19Ertd626e|PEO|Peo1|Twinl	twinkle mtDNA helicase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-116208091-4	chr6	116207997	116208197	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026585)	promoter-TSS (NM_026585)	64.0	NM_026585	28006.0	Mm.28524	NM_026585	ENSMUSG00000024104	Washc2	A130095H06|C530005J20Rik|D6Wsu116e|Fam21	WASH complex subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-79670442-4	chr10	79670347	79670547	+	918.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_148934, intron 1 of 1)	intron (NM_148934, intron 1 of 1)	1037.0	NM_148934	110012.0	Mm.22623	NM_148934	ENSMUSG00000020308	Tpgs1	AV005629|Gm16517|Gtrgeo22|PGs1	tubulin polyglutamylase complex subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-121973294-4	chr14	121973249	121973449	+	991.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026861, intron 4 of 8)	intron (NM_026861, intron 4 of 8)	-8156.0	NM_183031	321019.0	Mm.265618	NM_183031	ENSMUSG00000051212	Gpr183	Ebi2	G protein-coupled receptor 183	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-89016030-4	chr1	89015923	89016123	+	909.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040471)	promoter-TSS (NR_040471)	-90.0	NR_040471	73475.0	Mm.491040	NR_040471	ENSMUSG00000099378	1700067G17Rik	-	RIKEN cDNA 1700067G17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-86118797-4	chr5	86118687	86118887	+	993.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172712, intron 31 of 32)	URR1B|DNA|hAT-Charlie	47041.0	NM_001310639	56792.0	Mm.131237	NM_019992	ENSMUSG00000029254	Stap1	AI586015|Brdg1|STAP-1	signal transducing adaptor family member 1	protein-coding	3.3304455791004	3.86802953771733	3.16454431287579	3.50672453415779	3.87083642379274	3.75225668398225	2.49667064867059	3.28249461818083	-0.0494254072898249	0.932371125988166	0.998431161219273
Merged-chr17-79444690-2	chr17	79444591	79444791	+	679.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33194.0	NR_033463	74622.0	Mm.311921	NR_033463		4930429F11Rik	-	RIKEN cDNA 4930429F11 gene	ncRNA	1.76219046004606	1.75117411058927	0.996654846406788	1.41091357338494	1.5403093751653	0.798585491972898	0.783737770543256	0.770818441338789	-1.87381803271022	0.192065512921119	0.670648443266021
Merged-chr4-55817251-4	chr4	55817161	55817361	+	967.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-284786.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-88820265-2	chr15	88820165	88820365	+	760.916626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145477)	promoter-TSS (NM_145477)	619.0	NM_029720	76737.0	Mm.292567	NM_029720	ENSMUSG00000023272	Creld2	5730592L21Rik|C85758	cysteine-rich with EGF-like domains 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-105779478-3	chr14	105779368	105779568	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	117351.0	NM_011897	24064.0	Mm.89982	NM_011897	ENSMUSG00000022114	Spry2	sprouty2	sprouty RTK signaling antagonist 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-4508341-2	chr7	4508241	4508441	+	618.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360154, intron 10 of 12)	intron (NM_001360154, intron 10 of 12)	-6661.0	NM_029834	232807.0	Mm.360391	NM_029834	ENSMUSG00000019254	Ppp1r12c	2410197A17Rik|AI839747|B430101M08|Mbs85	protein phosphatase 1, regulatory (inhibitor) subunit 12C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-48433612-2	chr6	48433525	48433725	+	584.333374	f0_c57.idr|f1_c57bl6.idr	intron (NM_001085417, intron 4 of 4)	intron (NM_001085417, intron 4 of 4)	11465.0	NM_001085415	68910.0	Mm.2464	NM_020589	ENSMUSG00000068551	Zfp467	1190001I08Rik|AB041616|AI426952|AV017623|EZI|MNCb-3350|Znf467	zinc finger protein 467	protein-coding	0.28074004043419	1.55308304109275	0.303543197237517	1.05399631589911	0.62329706963909	0.557338550856927	0.305939156904632	0.296568633222719	-2.40688924474278	0.188283643878215	0.666689812458891
Merged-chr4-45465233-2	chr4	45465144	45465344	+	633.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033306, intron 2 of 5)	intron (NM_001033306, intron 2 of 5)	-56478.0	NM_001009949	230125.0	Mm.260210	NM_001009949	ENSMUSG00000045973	Slc25a51	9130208E07Rik|D130005A03Rik|Gm138|Mcart1	solute carrier family 25, member 51	protein-coding	0.278227066840023	-0.0966779652097216	-0.102260606067312	0.794958916612842	0.172295352576147	-0.0954219544526143	-0.101027794719077	-0.105824677370571	-2.41429264629612	0.295541420923851	1
Merged-chr7-130273445-2	chr7	130273345	130273545	+	599.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6637.0	NM_201601	14183.0	Mm.16340	NM_010207	ENSMUSG00000030849	Fgfr2	AU043015|AW556123|Bek|Fgfr-2|Fgfr-7|Fgfr7|KGFR|KGFRTr|svs	fibroblast growth factor receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-29348953-2	chr6	29348853	29349053	+	677.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285412, intron 1 of 6)	intron (NM_001285412, intron 1 of 6)	847.0	NM_007594	12321.0	Mm.392075	NM_007594	ENSMUSG00000029767	Calu	9530075H20Rik	calumenin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-37542723-3	chr1	37542612	37542812	+	657.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1696.0	NM_173870	269181.0	Mm.25861	NM_173870	ENSMUSG00000026110	Mgat4a	9530018I07Rik|GnT-IVa|glcNAc-T-IVa	mannoside acetylglucosaminyltransferase 4, isoenzyme A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-99159641-2	chr12	99159541	99159741	+	543.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3167.0	NR_038130	67639.0	Mm.87374	NR_038130	ENSMUSG00000113210	4930474N09Rik	-	RIKEN cDNA 4930474N09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-89361185-2	chr6	89361085	89361285	+	675.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008881, intron 1 of 31)	intron (NM_008881, intron 1 of 31)	1428.0	NM_008881	18844.0	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140736594-2	chr5	140736494	140736694	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173405, intron 2 of 7)	intron (NM_173405, intron 2 of 7)	12467.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132473146-2	chr4	132473046	132473246	+	697.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9225.0	NM_026039	67219.0	Mm.45929	NM_026039	ENSMUSG00000066042	Med18	2810046C01Rik	mediator complex subunit 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-134094135-4	chr4	134094051	134094251	+	898.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013706, intron 1 of 1)	intron (NM_013706, intron 1 of 1)	922.0	NM_013706	23833.0	Mm.24130	NM_013706	ENSMUSG00000000682	Cd52	AI463198|B7|B7-Ag|CAMPATH-1|CLS1|MB7	CD52 antigen	protein-coding	3.66347429232407	2.96399527619999	3.06692781356728	3.29872273048143	2.66075112699398	2.86546060868725	2.76949604785969	2.07040616073468	-1.19749002251141	0.0717409412863321	0.403554349176712
Merged-chr7-16050782-2	chr7	16050715	16050915	+	788.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21030.0	NM_001347559	666528.0	Mm.290718	NM_001099277	ENSMUSG00000078796	Zfp541	EG666528|Znf541	zinc finger protein 541	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26244301-4	chr17	26244217	26244417	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001206335)	promoter-TSS (NM_001206335)	-75.0	NM_001206335	106581.0	Mm.28844	NM_207217	ENSMUSG00000024187	Fam234a	Itfg3	family with sequence similarity 234, member A	protein-coding	5.83384940221307	6.46148577691288	6.20465205347183	6.56290150371363	6.00857077497546	6.17192414934777	6.29628609054672	6.56234492616267	-0.0151294660842115	0.948448247292071	0.998431161219273
Merged-chr5-96631922-2	chr5	96631822	96632022	+	620.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175473, intron 20 of 73)	B2_Mm2|SINE|B2	-161463.0	NM_013470	11745.0	Mm.7214	NM_013470	ENSMUSG00000029484	Anxa3	Anx3	annexin A3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45718003-4	chr7	45717888	45718088	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_203280)	promoter-TSS (NM_203280)	14.0	NM_203280	56632.0	Mm.24222	NM_020011	ENSMUSG00000057342	Sphk2	C76851	sphingosine kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-10903978-2	chr16	10903878	10904078	+	549.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10819.0	NR_131135	545180.0	Mm.373756	NR_131135	ENSMUSG00000095369	Gm21859	-	predicted gene, 21859	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-54371703-3	chr13	54371586	54371786	+	910.422241	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009946, intron 1 of 3)	CpG	337.0	NM_009946	12890.0	Mm.268902	NM_009946	ENSMUSG00000025867	Cplx2	921-L|AI413745|AW492120|Gm34843	complexin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53827003-4	chr4	53826906	53827106	+	952.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028053, intron 1 of 5)	Charlie1b|DNA|hAT-Charlie	961.0	NM_028053	52076.0	Mm.27184	NM_028053	ENSMUSG00000028420	Tmem38b	1600017F22Rik|AA437809|AV051057|D4Ertd89e|TRIC-B|mg33b	transmembrane protein 38B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-136078774-4	chr3	136078671	136078871	+	864.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033350, intron 11 of 16)	intron (NM_001033350, intron 11 of 16)	-238502.0	NR_040540	71038.0	Mm.410798	NR_040540	ENSMUSG00000106306	4933401H06Rik	-	RIKEN cDNA 4933401H06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-25069396-2	chr19	25069296	25069496	+	587.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028785, intron 4 of 47)	B3A|SINE|B2	69867.0	NM_028785	76088.0	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-90261515-3	chr9	90261412	90261612	+	958.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 1 of 12)	intron (NM_194334, intron 1 of 12)	9257.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-151250909-4	chr1	151250781	151250981	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1H|LTR|ERVL-MaLR	-93605.0	NM_001359262	117198.0	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-88231795-2	chr7	88231695	88231895	+	628.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-46290.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166090563-2	chr2	166090454	166090654	+	825.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252579, intron 5 of 20)	intron (NM_001252579, intron 5 of 20)	64731.0	NM_001355619	72043.0	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	0.412836864512352	0.441703729544961	1.43538477453527	0.763152992104134	0.579724571499849	0.443798426304884	0.943947805951697	0.902550599255698	-0.555034289237805	0.741488633074385	1
Merged-chr2-57123709-4	chr2	57123621	57123821	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001139509, intron 1 of 7)	CpG	282.0	NM_001139509	18227.0	Mm.3507	NM_013613	ENSMUSG00000026826	Nr4a2	HZF-3|NOT|Nurr1|RNR-1|TINOR|TINUR	nuclear receptor subfamily 4, group A, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-131174842-4	chr2	131174744	131174944	+	947.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027641)	promoter-TSS (NM_027641)	-34.0	NM_027641	70997.0	Mm.252722	NM_027641	ENSMUSG00000027329	Spef1	4931426K16Rik|Clamp	sperm flagellar 1	protein-coding	0.683792807900399	0.0798847758848945	0.514681594378417	0.481862344290713	0.0647088820273501	0.0810833595338039	0.075744070368004	0.231996867129723	-3.14254730612194	0.130441107641501	1
Merged-chr13-76393303-3	chr13	76393207	76393407	+	965.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030174, intron 1 of 20)	intron (NM_030174, intron 1 of 20)	8346.0	NM_030174	78771.0	Mm.316249	NM_030174	ENSMUSG00000021596	Mctp1	2810465F10Rik	multiple C2 domains, transmembrane 1	protein-coding	2.85910823858407	1.24044999819328	2.1774198383769	2.69199266525694	2.01247959466141	2.81452805282877	1.48616803656787	1.18216140592168	-0.746478709677085	0.48401066016425	0.931207887927275
Merged-chr11-50231965-2	chr11	50231865	50232065	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_105884)	promoter-TSS (NR_105884)	-280.0	NR_105884	102466765.0		NR_105884	ENSMUSG00000098474	Mir6919	Gm27889|mmu-mir-6919	microRNA 6919	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-6359939-2	chr4	6359840	6360040	+	595.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5740.0	NM_016807	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	2.58376274425406	1.1962023492635	2.45554513242932	1.73120222258125	1.9061060414035	1.20201157907788	2.07238350179259	1.88131779919665	-0.806397015733369	0.456475093830982	0.919264728457769
Merged-chr2-60905420-4	chr2	60905314	60905514	+	913.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	-23976.0	NM_001141931	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119374561-2	chr11	119374461	119374661	+	787.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178743, intron 11 of 16)	intron (NM_178743, intron 11 of 16)	-15911.0	NR_035453	100316690.0		NR_035453	ENSMUSG00000088015	Mir1932	mir-1932|mmu-mir-1932	microRNA 1932	ncRNA	0.458476856546912	1.04555623535169	0.557037018699275	0.0490231883670218	0.0410486631094295	0.0634262938642826	0.0562103125282711	0.050003414370126	-4.21109412190913	0.0425722081592298	1
Merged-chr9-107563229-4	chr9	107563144	107563344	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019742)	promoter-TSS (NM_019742)	-11.0	NM_019742	80385.0	Mm.21739	NM_019742	ENSMUSG00000010054	Tusc2	1190001E22Rik|AA407686|Fus1|Lgcc|PAP|Pdap2	tumor suppressor candidate 2	protein-coding	5.87727244335914	5.77012967925158	6.08760134394465	5.00709065293318	4.91105138783067	3.67217420212629	5.1721749369804	4.47032736922827	-1.24033370130031	0.000641384412130358	0.0137253213616053
Merged-chr7-109028079-2	chr7	109027979	109028179	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021885, intron 9 of 11)	intron (NM_021885, intron 9 of 11)	17199.0	NM_021885	22141.0	Mm.439722	NM_021885	ENSMUSG00000031028	Tub	rd5|tub	tubby bipartite transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-59227495-2	chr10	59227395	59227595	+	866.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	5573.0	NM_172939	268301.0	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-93245599-1	chr14	93245499	93245699	+	598.0	f1_c57bl6.idr	intron (NM_001271800, intron 3 of 3)	Lx7|LINE|L1	645070.0	NM_001271800	211712.0	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding	0.929694489874259	1.50898741513699	2.80839357994108	0.966300387531328	1.76408408863188	1.86869140592885	1.93321874124644	1.41884061649731	-0.226670204653583	0.850573660160826	0.998431161219273
Merged-chr10-127678172-4	chr10	127678117	127678317	+	856.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173732, intron 1 of 6)	intron (NM_173732, intron 1 of 6)	1152.0	NM_001113211	210035.0	Mm.251075	NM_173732	ENSMUSG00000040195	Nemp1	Tmem194|Tmem194a	nuclear envelope integral membrane protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117377614-2	chr10	117377514	117377714	+	890.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310609)	promoter-TSS (NM_001310609)	-641.0	NM_001310609	432508.0	Mm.478881	NM_001013391	ENSMUSG00000055531	Cpsf6	4733401N12Rik|AI256641|CFIM|CFIM68|HPBRII-4|HPBRII-7	cleavage and polyadenylation specific factor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-80258555-2	chr12	80258455	80258655	+	626.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_134156, intron 1 of 20)	intron (NM_134156, intron 1 of 20)	1816.0	NM_134156	109711.0	Mm.253564	NM_134156	ENSMUSG00000015143	Actn1	3110023F10Rik|Actn1a	actinin, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10177316-4	chr19	10177218	10177418	+	881.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER57C2|LTR|ERV1	-5570.0	NM_146094	76267.0	Mm.30158	NM_146094	ENSMUSG00000010663	Fads1	0710001O03Rik|A930006B21Rik|AI317215|DSD	fatty acid desaturase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-55755628-3	chr16	55755538	55755738	+	931.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	66500.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-13173720-3	chr15	13173631	13173831	+	953.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007666)	promoter-TSS (NM_007666)	-56.0	NM_007666	12563.0	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-22467783-3	chr9	22467676	22467876	+	975.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018739, intron 1 of 5)	CpG	580.0	NM_018739	55934.0	Mm.38235	NM_018739	ENSMUSG00000032239	Rp9	PAP-1|Rp9h	retinitis pigmentosa 9 (human)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-10566008-4	chr9	10565924	10566124	+	987.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033359, intron 2 of 20)	intron (NM_001033359, intron 2 of 20)	338702.0	NM_001033359	244682.0	Mm.187021	NM_001033359	ENSMUSG00000039488	Cntn5	6720426O10Rik|A830025P08Rik|Gm507|NB-2	contactin 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-58687077-1	chr13	58686977	58687177	+	687.5	f0_balb.idr	Intergenic	Intergenic	75234.0	NR_045469	67585.0	Mm.84751	NR_045469	ENSMUSG00000114384	4930455J16Rik	-	RIKEN cDNA 4930455J16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-4148474-3	chr7	4148374	4148574	+	875.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_172736)	TTS (NM_172736)	1398.0	NM_175529	243813.0	Mm.347643	NM_175529	ENSMUSG00000043432	Leng9	9530024C23Rik|F630035L11Rik	leukocyte receptor cluster (LRC) member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-87393575-4	chr12	87393479	87393679	+	883.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5224.0	NM_011479	20773.0	Mm.565	NM_011479	ENSMUSG00000021036	Sptlc2	LCB2|LCB2a|Spt2	serine palmitoyltransferase, long chain base subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-23197420-4	chr18	23197343	23197543	+	890.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20153.0	NR_110491	665797.0	Mm.328158	NR_110491		Gm7788	EG665797	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3322398-4	chr19	3322317	3322517	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013495)	promoter-TSS (NM_013495)	-884.0	NM_013495	12894.0	Mm.18522	NM_013495	ENSMUSG00000024900	Cpt1a	C730027G07|CPTI|Cpt1	carnitine palmitoyltransferase 1a, liver	protein-coding	3.88297803041299	3.33821617599622	4.74528903295423	4.08466918276043	3.18054134579357	4.5267779898771	4.04299701970508	4.36064269353063	-0.000501388246243834	0.999207088572872	0.999651452167768
Merged-chr10-80991301-2	chr10	80991201	80991401	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038655, intron 2 of 3)	B2_Mm2|SINE|B2	10064.0	NM_001038655	14708.0	Mm.222496	NM_010319	ENSMUSG00000048240	Gng7	AI840417	guanine nucleotide binding protein (G protein), gamma 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-71444948-4	chr6	71444848	71445048	+	955.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-4311.0	NM_024288	68477.0	Mm.28474	NM_024288	ENSMUSG00000002222	Rmnd5a	1110007A06Rik|AJ237586|AW125795|Gid2|MTA.D02.090	required for meiotic nuclear division 5 homolog A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-24142149-4	chr18	24142097	24142297	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-20378.0	NM_172625	225280.0	Mm.258973	NM_172625	ENSMUSG00000047989	Ino80c	D030070L09Rik	INO80 complex subunit C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-108990330-4	chr3	108990227	108990427	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163567, intron 4 of 10)	intron (NM_001163567, intron 4 of 10)	37280.0	NM_001163567	329739.0	Mm.69013	NM_001163567	ENSMUSG00000040339	Fam102b	1600010D10Rik|B430201A12Rik	family with sequence similarity 102, member B	protein-coding	3.2733208393432	3.49714620893119	4.34512126949432	2.85539967135568	2.8389674724411	3.31899306795646	4.04066913899427	3.54534050801213	-0.162770742807776	0.785143924177755	0.998431161219273
Merged-chr9-53384503-4	chr9	53384383	53384583	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_212445, intron 1 of 7)	CpG	460.0	NM_212445	68304.0	Mm.427519	NM_212445	ENSMUSG00000034487	Kdelc2	2010004J24Rik|4833410J10Rik|AW549401	KDEL (Lys-Asp-Glu-Leu) containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-22308342-4	chr10	22308252	22308452	+	996.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015465, intron 2 of 2)	intron (NR_015465, intron 2 of 2)	1632.0	NR_015465	606736.0	Mm.387042	NR_015465	ENSMUSG00000097352	C920009B18Rik	-	RIKEN cDNA C920009B18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-136894121-4	chr4	136894012	136894212	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1198.0	NM_007574	12262.0	Mm.439732	NM_007574	ENSMUSG00000036896	C1qc	AI385742|C1qg|Ciqc	complement component 1, q subcomponent, C chain	protein-coding	4.91119928437418	5.25730960053027	4.4157104457428	4.40333550163673	4.85533425245079	4.27223454559289	5.07064986247912	4.82423492863284	-0.00194268927620745	0.995791924715934	0.998677473898728
Merged-chr16-33944003-2	chr16	33943903	33944103	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 11 of 14)	intron (NM_001145884, intron 11 of 14)	23035.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-106408120-4	chr1	106407977	106408177	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	138554.0	NR_106164	102466254.0		NR_106164	ENSMUSG00000098344	Mir3473f	Gm27846|mmu-mir-3473f	microRNA 3473f	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-8973587-3	chr8	8973494	8973694	+	654.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	158694.0	NR_045854	71249.0	Mm.158635	NR_045854	ENSMUSG00000108848	4933430N04Rik	-	RIKEN cDNA 4933430N04 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67105110-3	chr10	67104974	67105174	+	696.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8086.0	NM_178606	28193.0	Mm.41272	NM_178606	ENSMUSG00000019873	Reep3	D10Ucla1	receptor accessory protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-54029207-4	chr11	54029088	54029288	+	928.4833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1084.0	NM_001330304	30805.0	Mm.274590	NM_019687	ENSMUSG00000020334	Slc22a4	Octn1	solute carrier family 22 (organic cation transporter), member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-37984493-4	chr18	37984391	37984591	+	953.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139206, intron 18 of 32)	intron (NM_139206, intron 18 of 32)	6454.0	NR_105946	102466913.0		NR_105946	ENSMUSG00000098297	Mir6980	Gm27969|mmu-mir-6980	microRNA 6980	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-138856666-4	chr4	138856561	138856761	+	666.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122954, intron 1 of 5)	ORR1D2|LTR|ERVL-MaLR	6808.0	NM_001122954	18784.0	Mm.486532	NM_011110	ENSMUSG00000041193	Pla2g5	PLA2|sPLA2	phospholipase A2, group V	protein-coding	2.12369319339832	2.40357669430301	2.66456105400898	2.58562277254639	1.4803111271701	1.66138674132492	3.55774200476342	1.96012762722438	0.0880362996498408	0.924127265521737	0.998431161219273
Merged-chr7-114081739-1	chr7	114081639	114081839	+	681.0	f0_c57.idr	intron (NM_025846, intron 1 of 5)	intron (NM_025846, intron 1 of 5)	36042.0	NM_025846	66922.0	Mm.276572	NM_025846	ENSMUSG00000055723	Rras2	2610016H24Rik|C86394|TC21	related RAS viral (r-ras) oncogene 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-59914087-4	chr1	59913966	59914166	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037725, intron 1 of 7)	intron (NM_001037725, intron 1 of 7)	1060.0	NM_001037725	72750.0	Mm.258250	NM_001037725	ENSMUSG00000041040	Fam117b	2810425F24Rik|6330416D14Rik|Als2cr13	family with sequence similarity 117, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-31362083-4	chr5	31361978	31362178	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16_Mm|LTR|ERVK	64497.0	NM_144909	231103.0	Mm.100043	NM_144909	ENSMUSG00000059434	Gckr	GKRP	glucokinase regulatory protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-97939055-4	chr13	97938958	97939158	+	852.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012026, intron 31 of 35)	intron (NM_012026, intron 31 of 35)	187946.0	NR_152263	111365222.0	Mm.440079	NR_152263		Eyelinc18	-	uncharacterized EyeLinc18	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-48410627-3	chr9	48410579	48410779	+	870.966675	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43665.0	NR_026561	667933.0	Mm.491076	NR_026561		Gm8884	EG667933	predicted gene 8884	ncRNA	0.854597316075725	1.53596143615426	0.521892443569166	0.299654735138025	0.288087340679645	0.320276898077431	0.309986907009895	0.81561872814518	-2.32726126687781	0.203638708329958	1
Merged-chr19-4425824-2	chr19	4425724	4425924	+	557.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007485, exon 5 of 5)	3' UTR (NM_007485, exon 5 of 5)	-13499.0	NR_045990	319314.0	Mm.393810	NR_045989	ENSMUSG00000087132	A930001C03Rik	-	RIKEN cDNA A930001C03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5841404-11	chr17	5841257	5841457	+	965.113647	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025664)	promoter-TSS (NM_025664)	-23.0	NM_025664	66616.0	Mm.89515	NM_025664	ENSMUSG00000002365	Snx9	2700073N08Rik|SDP1|SH3PX1	sorting nexin 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-39109621-2	chr16	39109521	39109721	+	934.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	79329.0	NR_153800	102640746.0		NR_153800		Gm36742	-	predicted gene, 36742	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-58265388-2	chr15	58265288	58265488	+	888.6666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4A|LINE|L1	-50496.0	NM_026346	67731.0	Mm.25683	NM_026346	ENSMUSG00000022358	Fbxo32	4833442G10Rik|AI430017|ATROGIN1|Gm20361|MAFbx	F-box protein 32	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-34247106-4	chr18	34247023	34247223	+	978.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360979)	promoter-TSS (NM_001360979)	-571.0	NM_001360980	11789.0	Mm.384171	NM_007462	ENSMUSG00000005871	Apc	AI047805|AU020952|AW124434|CC1|Min|mAPC	adenomatosis polyposis coli	protein-coding	2.99162249436213	1.68754240847709	1.35629092253288	2.87880124687958	2.1766687877738	2.70908844541373	1.87105714120149	3.28443752488782	0.382778282436536	0.682179514944716	0.995882295196263
Merged-chr8-57540382-4	chr8	57540264	57540464	+	997.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167981, intron 6 of 11)	intron (NM_001167981, intron 6 of 11)	28521.0	NM_008252	97165.0	Mm.276881	NM_008252	ENSMUSG00000054717	Hmgb2	C80539|HMG-2|Hmg2	high mobility group box 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64265361-1	chr5	64265261	64265461	+	574.0	f0_balb.idr	intron (NM_001289514, intron 5 of 18)	intron (NM_001289514, intron 5 of 18)	35004.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117090225-3	chr11	117090089	117090289	+	932.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12841.0	NR_105853	102465258.0		NR_105853	ENSMUSG00000104740	Mir6516	mmu-mir-6516	microRNA 6516	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135085323-2	chr5	135085223	135085423	+	951.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4567.0	NM_001359237	58805.0	Mm.34213	NM_021455	ENSMUSG00000005373	Mlxipl	ChREBP|Mlx|WS-bHLH|Wbscr14|bHLHd14	MLX interacting protein-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-18712288-1	chr19	18712188	18712388	+	545.0	f1_balb.idr	promoter-TSS (NM_177640)	promoter-TSS (NM_177640)	-948.0	NM_177640	225995.0	Mm.28101	NM_177640	ENSMUSG00000047044	D030056L22Rik	-	RIKEN cDNA D030056L22 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-29206900-4	chr10	29206795	29206995	+	764.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4748.0	NM_001162537	212448.0	Mm.132789	NM_001162537	ENSMUSG00000004360	9330159F19Rik	-	RIKEN cDNA 9330159F19 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-43534990-4	chr17	43534896	43535096	+	984.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001254953, exon 3 of 3)	exon (NM_001254953, exon 3 of 3)	8643.0	NM_001254953	100043332.0	Mm.17626	NM_001254953	ENSMUSG00000096140	Ankrd66	AU041848|D730048J04Rik|Gm4368	ankyrin repeat domain 66	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-39481725-3	chr18	39481636	39481836	+	694.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008173, intron 1 of 7)	intron (NM_008173, intron 1 of 7)	5509.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-24629011-4	chr7	24628892	24629092	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001102613, exon 15 of 15)	3' UTR (NM_001102613, exon 15 of 15)	-7578.0	NM_133743	72434.0	Mm.281093	NM_133743	ENSMUSG00000057454	Lypd3	2310061G07Rik|C4.4a	Ly6/Plaur domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116642859-2	chr11	116642759	116642959	+	617.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	11454.0	NM_030206	114886.0	Mm.34598	NM_030206	ENSMUSG00000020810	Cygb	3110001K20Rik|HGb|Staap	cytoglobin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-44846346-2	chr1	44846246	44846446	+	783.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4A|LINE|L1	-101397.0	NR_040602	75066.0	Mm.416932	NR_040602	ENSMUSG00000101701	4930521E06Rik	-	RIKEN cDNA 4930521E06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46390538-1	chr19	46390438	46390638	+	809.0	f1_c57bl6.idr	intron (NM_016860, intron 1 of 10)	B1_Mm|SINE|Alu	5197.0	NM_016860	54130.0	Mm.3118	NM_016860	ENSMUSG00000025228	Actr1a	Arp1|alpha-Arp1	ARP1 actin-related protein 1A, centractin alpha	protein-coding	-0.928940593673113	0.15260240890053	-0.919403370180166	-0.922956985378252	-0.928043701396376	-0.905131160573435	-0.918394354967459	-0.922333464130162	-3.4757377177308	0.248847205590595	1
Merged-chr14-73442136-4	chr14	73442047	73442247	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56858.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-60682396-3	chr13	60682279	60682479	+	851.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	80168.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124279123-3	chr6	124279027	124279227	+	941.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25524.0	NM_001170395	93671.0	Mm.37426	NM_053094	ENSMUSG00000008845	Cd163	CD163v2|CD163v3	CD163 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-51930811-4	chr1	51930709	51930909	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14831.0	NM_010863	17912.0	Mm.3390	NM_010863	ENSMUSG00000018417	Myo1b	AA406997|MIH-L|MMIa	myosin IB	protein-coding	4.74339106702192	4.67874484732526	5.02827338433407	4.78201463218698	5.62129450932736	5.21749727412142	5.78345313856144	5.19693209581758	0.782845416714765	0.0108812200166995	0.115625303720841
Merged-chr10-117418139-4	chr10	117418039	117418239	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29296.0	NR_152734	102634600.0	Mm.399106	NR_152734	ENSMUSG00000112344	Gm32141	-	predicted gene, 32141	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-135915803-1	chr6	135915703	135915903	+	609.0	f1_c57bl6.idr	intron (NM_008171, intron 5 of 14)	intron (NM_008171, intron 5 of 14)	256890.0	NR_126088	75024.0	Mm.399147	NR_126088	ENSMUSG00000107396	4930425L21Rik	4930473P14Rik	RIKEN cDNA 4930425L21 gene	ncRNA	-1.20406370813143	-1.56956373024278	-1.57884638916872	-1.58647144159385	-1.598104728449	-1.56755213932999	-1.57674499865798	-1.58510656085539	-1.70745470802464	0.626337835847419	1
Merged-chr13-63138624-2	chr13	63138524	63138724	+	648.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289926, intron 5 of 15)	intron (NM_001289926, intron 5 of 15)	-101405.0	NR_110520	72061.0	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-25495085-2	chr2	25494985	25495185	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-1174.0	NM_029958	77701.0	Mm.99123	NM_029958	ENSMUSG00000026943	Lcn12	9230102M18Rik	lipocalin 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127514389-3	chr10	127514304	127514504	+	994.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001098789)	promoter-TSS (NM_001098789)	-535.0	NM_001098789	407790.0	Mm.336856	NM_001098789	ENSMUSG00000040280	Ndufa4l2	BC064011	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4-like 2	protein-coding	-0.046844712709471	0.194601858793758	-0.0320608980317411	-0.0375810573676275	0.266403035268604	-0.0233811459001281	1.08316262281342	0.154385557842878	3.36681212702233	0.100936335973775	1
Merged-chr5-34520114-2	chr5	34520014	34520214	+	541.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5670.0	NM_011893	24055.0	Mm.5012	NM_011893	ENSMUSG00000054520	Sh3bp2	3BP2	SH3-domain binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-75214754-2	chr18	75214688	75214888	+	572.5	f0_balb.idr|f1_balb.idr	intron (NM_027727, intron 14 of 16)	intron (NM_027727, intron 14 of 16)	82529.0	NR_045394	100503117.0	Mm.250517	NR_045393	ENSMUSG00000102047	2010010A06Rik	5033420E22Rik	RIKEN cDNA 2010010A06 gene	ncRNA	1.08605887012502	0.695627125169446	0.684081013682392	1.0179866210538	0.972439362378503	0.917783846655147	1.53980434103635	1.56810061580654	1.84687080537328	0.199742397545562	0.683285293409518
Merged-chr14-45142777-4	chr14	45142685	45142885	+	901.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310534, intron 18 of 20)	intron (NM_001310534, intron 18 of 20)	76640.0	NM_172597	70561.0	Mm.28129	NM_172597	ENSMUSG00000021830	Txndc16	5730420B22Rik|C77647	thioredoxin domain containing 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-74916330-2	chr15	74916230	74916430	+	977.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34626.0	NM_025929	67038.0	Mm.154566	NM_025929	ENSMUSG00000063522	2010109I03Rik	Ly6m	RIKEN cDNA 2010109I03 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-21369685-2	chr12	21369602	21369802	+	868.0	f0_c57.idr|f1_balb.idr	intron (NM_001291871, intron 1 of 18)	intron (NM_001291871, intron 1 of 18)	3930.0	NR_102380	11491.0	Mm.27681	NM_009615	ENSMUSG00000052593	Adam17	CD156b|Tace	a disintegrin and metallopeptidase domain 17	protein-coding	1.24855498531688	1.14350255307899	0.733673114546518	1.32660662195053	1.67621542003481	1.4415744343398	0.736366849982491	0.725854165344768	0.386418627653529	0.794799298472622	0.998431161219273
Merged-chr13-43565613-4	chr13	43565502	43565702	+	924.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5411.0	NM_001081059	76137.0	Mm.426290	NM_001081059	ENSMUSG00000021371	Mcur1	6230416A05Rik|AU015498|AV136929|AW554392|C88263|Ccdc90a	mitochondrial calcium uniporter regulator 1	protein-coding	5.11795512619207	5.15022137757765	4.21890119827759	5.14765901504948	5.80700171524547	4.87295945750727	4.86133030055353	6.16065336756167	0.685659741149646	0.0651828877106616	0.382365198868571
Merged-chr16-29989417-4	chr16	29989285	29989485	+	888.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10261.0	NR_037689	328657.0	Mm.425982	NM_001033403		Gm1968	-	predicted gene 1968	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-6244352-1	chr18	6244252	6244452	+	541.0	f0_balb.idr	Intergenic	MTC|LTR|ERVL-MaLR	-2828.0	NM_008448	16573.0	Mm.223744	NM_008448	ENSMUSG00000006740	Kif5b	AL022807|Khc|Khcs|Kns1|Ukhc	kinesin family member 5B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-113103969-2	chr6	113103869	113104069	+	627.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173005)	promoter-TSS (NM_173005)	-966.0	NM_173005	72895.0	Mm.367159	NM_028385	ENSMUSG00000034269	Setd5	2900045N06Rik|C330007C20|C85544|mKIAA1757	SET domain containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-59541526-4	chr11	59541416	59541616	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359638)	promoter-TSS (NM_001359638)	-53.0	NM_001359638	216799.0	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-93253442-2	chr15	93253342	93253542	+	547.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033275, intron 4 of 7)	intron (NM_001033275, intron 4 of 7)	21737.0	NM_001357006	223827.0	Mm.22819	NM_001033275	ENSMUSG00000036197	Gxylt1	Glt8d3|Gm1228|Gm87	glucoside xylosyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-98920585-6	chr12	98920479	98920679	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029553)	promoter-TSS (NM_029553)	5.0	NM_029553	76260.0	Mm.282660	NM_029553	ENSMUSG00000021013	Ttc8	0610012F22Rik|AV001447|BBS8	tetratricopeptide repeat domain 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-35859968-1	chr8	35859868	35860068	+	619.0	f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	22989.0	NR_046181	330737.0	Mm.381743	NR_046181	ENSMUSG00000109761	5430403N17Rik	5430403N17	RIKEN cDNA 5430403N17 gene	ncRNA	1.51588986966704	2.16989949284876	0.985867556885357	2.85232587678592	0.925852524424237	2.40975636989438	0.992590957632474	1.77405587814696	-0.941192453529457	0.447229760403495	0.914498173479176
Merged-chr16-38800310-2	chr16	38800246	38800446	+	894.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178924)	promoter-TSS (NM_178924)	-143.0	NM_178924	22268.0	Mm.130793	NM_178924	ENSMUSG00000049436	Upk1b	AI413235|Tspan20|UPIb|Upk1	uroplakin 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-148986154-4	chr6	148986057	148986257	+	910.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39687.0	NM_001361398	56306.0	Mm.18637	NM_019643	ENSMUSG00000039985	Fam60a	Ppcs1|Pptcs1|Sinhcaf|Tera	family with sequence similarity 60, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-74936464-2	chr14	74936364	74936564	+	633.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033439, intron 1 of 19)	B1F|SINE|Alu	11413.0	NM_001252132	380916.0	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-52196835-2	chr14	52196736	52196936	+	741.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_033618, intron 1 of 25)	CpG	403.0	NM_033618	114741.0	Mm.21662	NM_033618	ENSMUSG00000035726	Supt16	Cdc68|Fact140|Spt16|Supt16h	suppressor of Ty 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-103550208-3	chr15	103550062	103550262	+	821.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-12170.0	NM_021391	58200.0	Mm.143788	NM_021391	ENSMUSG00000022490	Ppp1r1a	0610038N18Rik|I-1	protein phosphatase 1, regulatory (inhibitor) subunit 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99963025-4	chr7	99962948	99963148	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175388, intron 1 of 5)	intron (NM_175388, intron 1 of 5)	17410.0	NM_175388	108937.0	Mm.323087	NM_175388	ENSMUSG00000058761	Rnf169	2900057K09Rik	ring finger protein 169	protein-coding	3.59492418415381	3.750947535273	2.74763208128227	2.91687924134529	4.03618887942826	3.01108000686644	2.44479352128839	3.73913648391037	0.218522313644436	0.732610788568657	0.998431161219273
Merged-chr4-58506958-4	chr4	58506860	58507060	+	994.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010336, intron 1 of 3)	intron (NM_010336, intron 1 of 3)	-7557.0	NM_001290486	14745.0	Mm.4772	NM_010336	ENSMUSG00000038668	Lpar1	AI326300|Edg2|Gpcr26|Kdt2|lpA1|vzg-1	lysophosphatidic acid receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-33664650-3	chr8	33664542	33664742	+	962.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010344, intron 1 of 12)	RLTR6_Mm|LTR|ERV1	11404.0	NM_010344	14782.0	Mm.283573	NM_010344	ENSMUSG00000031584	Gsr	AI325518|D8Ertd238e|Gr-1|Gr1	glutathione reductase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-3291813-2	chr7	3291715	3291915	+	616.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001093765, intron 1 of 2)	intron (NM_001093765, intron 1 of 2)	-1213.0	NM_001093766	50918.0	Mm.29874	NM_016969	ENSMUSG00000068566	Myadm	D7Wsu62e	myeloid-associated differentiation marker	protein-coding	0.150248111143947	-0.194651453598728	-0.198920786489709	0.401583130022213	0.158435875354338	-0.193687027234068	-0.197980431776952	-0.201631527478117	-1.48656195400035	0.539878738042812	1
Merged-chr16-13902348-4	chr16	13902280	13902480	+	950.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289562)	promoter-TSS (NM_001289562)	765.0	NM_001039533	94184.0	Mm.171484	NM_053181	ENSMUSG00000022680	Pdxdc1	2210010A19Rik|AA415817|Kiaa0251-hp	pyridoxal-dependent decarboxylase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-45048810-2	chr2	45048710	45048910	+	994.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355291, intron 2 of 9)	intron (NM_001355291, intron 2 of 9)	-25633.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165938580-2	chr2	165938480	165938680	+	545.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4|SINE|ID	-53742.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-47442502-2	chr19	47442402	47442602	+	593.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008018, intron 1 of 14)	MIRb|SINE|MIR	21909.0	NM_001164717	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-72380991-1	chr1	72380891	72381091	+	547.0	f0_balb.idr	intron (NM_001357519, intron 16 of 20)	C-rich|Low_complexity|Low_complexity	73570.0	NM_001357519	22596.0	Mm.246952	NM_009533	ENSMUSG00000026187	Xrcc5	AI314015|CTC85|CTCBF|Ku80|Ku86	X-ray repair complementing defective repair in Chinese hamster cells 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-44986490-4	chr14	44986418	44986618	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1593.0	NM_008964	19217.0	Mm.4630	NM_008964	ENSMUSG00000037759	Ptger2	EP2|Ptgerep2	prostaglandin E receptor 2 (subtype EP2)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-84610899-3	chr16	84610808	84611008	+	883.988892	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68881.0	NR_040537	78023.0	Mm.243853	NR_040537		4930529L06Rik	-	RIKEN cDNA 4930529L06 gene	ncRNA	-0.517111730945054	-0.321776993222096	-0.634601313275871	-0.636540165238047	-0.513725086972106	-0.315440404138231	-0.63404390992808	-0.636202686743487	0.0399545079667482	0.987596296034594	1
Merged-chr10-99595823-2	chr10	99595723	99595923	+	586.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	-13348.0	NR_038019	100504202.0	Mm.403801	NR_038019	ENSMUSG00000111962	Gm20110	-	predicted gene, 20110	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-31235626-4	chr16	31235520	31235720	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34382.0	NM_030138	78618.0	Mm.274646	NM_030138	ENSMUSG00000049076	Acap2	4832442G16|9530039J15Rik|CNT-B2|Centb2|mKIAA0041	ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	protein-coding	6.50974558828809	6.3286825793447	5.97744816782669	6.50935724151756	6.46993125133731	6.11611092262261	6.40848684297505	6.91550535206079	0.173443273902257	0.445543074097471	0.913093059349143
Merged-chr13-56334480-4	chr13	56334372	56334572	+	991.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-28428.0	NR_046061	100038494.0	Mm.370447	NR_046061	ENSMUSG00000074885	Gm10782	-	predicted gene 10782	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126097708-4	chr7	126097601	126097801	+	878.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15290.0	NM_001358885	269994.0	Mm.39599	NM_001101488	ENSMUSG00000046182	Gsg1l	AI852434|C230098I05Rik|G630023A01Rik|Gm637|g1l	GSG1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-45111273-4	chr2	45111158	45111358	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289521)	promoter-TSS (NM_001289521)	120.0	NR_110572	433424.0	Mm.441408	NR_110571	ENSMUSG00000052248	Zeb2os	Gm13476|Zeb2nat	zinc finger E-box binding homeobox 2, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-9072154-4	chr4	9072043	9072243	+	795.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-197150.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-58525905-4	chr3	58525817	58526017	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030685)	promoter-TSS (NM_030685)	-33.0	NM_030685	28146.0	Mm.29702	NM_030685	ENSMUSG00000027808	Serp1	D3Ucla1|Ramp4	stress-associated endoplasmic reticulum protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-35772137-4	chr18	35772033	35772233	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019912, intron 1 of 6)	CpG	574.0	NM_019912	56550.0	Mm.180052	NM_019912	ENSMUSG00000091896	Ube2d2a	1500034D03Rik|Ubc2e|Ube2d2|ubc4	ubiquitin-conjugating enzyme E2D 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95129662-2	chr3	95129593	95129793	+	641.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001163573)	TTS (NM_001163573)	4319.0	NM_027013	69269.0	Mm.182944	NM_027013	ENSMUSG00000092607	Scnm1	3110001I17Rik|Scnm1-ps	sodium channel modifier 1	protein-coding	-0.58132946587753	-0.844840802309905	-0.85032008258867	-0.852816378161995	-0.856344710505631	-0.203579184585353	-0.849606559086228	-0.852380246919265	1.40694640454844	0.642381460903833	1
Merged-chr13-20128583-2	chr13	20128483	20128683	+	588.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	38076.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	-1.27480050717774	-0.604729833679879	-1.25573295904267	-1.26493563944758	-1.27428069156472	-1.24210192204986	-1.25319678955844	-1.26328836405502	-2.6632876257018	0.439827081912762	1
Merged-chr2-31881032-3	chr2	31880876	31881076	+	851.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6305.0	NM_011836	23928.0	Mm.69566	NM_011836	ENSMUSG00000026840	Lamc3	1110064A23Rik|AI562206|AW240805	laminin gamma 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99703015-2	chr15	99702915	99703115	+	591.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_031842, intron 1 of 12)	intron (NM_031842, intron 1 of 12)	728.0	NM_031842	83797.0	Mm.273756	NM_031842	ENSMUSG00000023018	Smarcd1	AA407987|Baf60a|D15Kz1	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-100162450-4	chr3	100162352	100162552	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175552)	promoter-TSS (NM_175552)	-11.0	NM_010269	14547.0	Mm.279228	NM_010269	ENSMUSG00000027865	Gdap2	C77050|D3Ertd801e	ganglioside-induced differentiation-associated-protein 2	protein-coding	4.33795410184666	4.78286783529564	5.33226662203671	5.1479613741422	4.46122321538933	4.95447502307997	4.61812847767593	4.79487969081968	-0.283575171720249	0.429847872720816	0.904095509792853
Merged-chr19-8578416-2	chr19	8578316	8578516	+	604.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12838.0	NM_001164634	19879.0	Mm.285294	NM_031194	ENSMUSG00000063796	Slc22a8	Oat3|Roct	solute carrier family 22 (organic anion transporter), member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-43671206-4	chr7	43671092	43671292	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145582)	promoter-TSS (NM_145582)	-839.0	NM_145582	233189.0	Mm.26514	NM_145582	ENSMUSG00000038888	Ctu1	Atpbd3|BC005752	cytosolic thiouridylase subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-102378029-2	chr15	102377929	102378129	+	751.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11061.0	NM_001348205	170574.0	Mm.263284	NM_130458	ENSMUSG00000060284	Sp7	6430578P22Rik|C22|Osx	Sp7 transcription factor 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-4145475-2	chr7	4145375	4145575	+	787.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_172736, exon 15 of 15)	exon (NM_172736, exon 15 of 15)	4397.0	NM_175529	243813.0	Mm.347643	NM_175529	ENSMUSG00000043432	Leng9	9530024C23Rik|F630035L11Rik	leukocyte receptor cluster (LRC) member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-4150605-1	chr12	4150505	4150705	+	545.0	f1_balb.idr	intron (NM_001159537, intron 2 of 21)	intron (NM_001159537, intron 2 of 21)	16452.0	NM_138305	104111.0	Mm.489807	NM_138305	ENSMUSG00000020654	Adcy3	AC3|mKIAA0511	adenylate cyclase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-70839892-2	chr17	70839792	70839992	+	829.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6885.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-90998538-4	chr1	90998459	90998659	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001111312)	promoter-TSS (NM_001111312)	-168.0	NM_001111312	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117147681-4	chr10	117147567	117147767	+	934.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177798, intron 1 of 9)	intron (NM_177798, intron 1 of 9)	807.0	NM_177798	327826.0	Mm.135965	NM_177798	ENSMUSG00000020170	Frs2	4732458E18|C330018A15Rik|Frs2alpha|SNT1	fibroblast growth factor receptor substrate 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-49090381-1	chr5	49090281	49090481	+	561.0	f0_balb.idr	intron (NM_001199244, intron 1 of 7)	intron (NM_001199244, intron 1 of 7)	195278.0	NM_001199244	80334.0	Mm.160172	NM_030265	ENSMUSG00000029088	Kcnip4	AV032399|Calp|Calp250|KChIP4|KChIP4a	Kv channel interacting protein 4	protein-coding	-1.7024385483431	-1.81249224917775	-1.82134771053534	-1.82862185015837	-1.70038292649591	-1.81057323376012	-1.81934302819017	-1.82731978264371	0.0376840119903864	0.991491645451152	1
Merged-chr14-55734855-2	chr14	55734755	55734955	+	580.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10829.0	NM_026819	52585.0	Mm.21623	NM_026819	ENSMUSG00000002332	Dhrs1	1110029G07Rik|AW112170|D14Ertd484e	dehydrogenase/reductase (SDR family) member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-12007844-4	chr19	12007737	12007937	+	968.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3A|LINE|L1	28903.0	NM_146680	258675.0	Mm.271517	NM_146680	ENSMUSG00000067529	Olfr1423	MOR239-3	olfactory receptor 1423	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-6579096-1	chr13	6578996	6579196	+	544.0	f1_balb.idr	TTS (NM_001291071)	TTS (NM_001291071)	30939.0	NM_001360106	69617.0	Mm.41933	NM_145131	ENSMUSG00000021193	Pitrm1	2310012C15Rik|AA410010|MP-1|MP1|Ntup1|PreP|mKIAA1104	pitrilysin metallepetidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26916969-4	chr17	26916881	26917081	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053173)	promoter-TSS (NM_053173)	-110.0	NM_053173	16580.0	Mm.491138	NM_016761	ENSMUSG00000024301	Kifc5b	Hset|KNSL2|Kifc5a	kinesin family member C5B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36589684-2	chr1	36589584	36589784	+	974.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001126046, intron 10 of 14)	intron (NM_001126046, intron 10 of 14)	3648.0	NM_027957	381337.0	Mm.17413	NM_027957	ENSMUSG00000046337	Fam178b	1700024G10Rik|Gm990	family with sequence similarity 178, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91649543-2	chr2	91649443	91649643	+	862.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027371)	promoter-TSS (NR_027371)	248.0	NM_001347175	381410.0	Mm.330401	NM_001033451	ENSMUSG00000075040	Zfp408	Gm1011	zinc finger protein 408	protein-coding	2.13182924497736	3.17114390248872	1.47915601119488	2.90054572210905	2.92405753610051	3.11022803744016	2.47796035930222	2.40004824436863	0.338495496148268	0.682048157787943	0.995882295196263
Merged-chr12-100578490-2	chr12	100578410	100578610	+	720.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153587, intron 8 of 17)	intron (NM_153587, intron 8 of 17)	-57688.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	-1.8429182434137	-1.8129848525291	-1.82203695700074	-1.54461076807193	-1.84081697472045	-1.81102322372834	-1.81998775896484	-1.82814164409203	-1.43114970378833	0.684630132144154	1
Merged-chr11-118483049-2	chr11	118482949	118483149	+	747.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_153103, intron 7 of 13)	intron (NR_153103, intron 7 of 13)	6217.0	NM_001359368	217364.0	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-90728836-4	chr6	90728758	90728958	+	947.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356440, intron 1 of 13)	intron (NM_001356440, intron 1 of 13)	-12329.0	NM_001134383	232227.0	Mm.196943	NM_182784	ENSMUSG00000034312	Iqsec1	AW561907|BC026481|BRAG2|D6Ertd349e|cI-43	IQ motif and Sec7 domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-66297518-2	chr14	66297418	66297618	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_038077)	promoter-TSS (NR_038077)	-389.0	NR_038077	69303.0	Mm.352258	NR_038077	ENSMUSG00000085984	1700001G11Rik	-	RIKEN cDNA 1700001G11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-24080155-2	chr11	24080055	24080255	+	596.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159290)	promoter-TSS (NM_001159290)	-540.0	NM_001159290	14025.0	Mm.53687	NM_016707	ENSMUSG00000000861	Bcl11a	2810047E18Rik|BCL-11A|Ctip1|D930021L15Rik|Evi9|Evi9a|Evi9b|Evi9c|mKIAA1809	B cell CLL/lymphoma 11A (zinc finger protein)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-5191261-2	chr10	5191161	5191361	+	967.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001079686, intron 2 of 54)	intron (NM_001079686, intron 2 of 54)	3446.0	NM_001079686	64009.0	Mm.331626	NM_022027	ENSMUSG00000096054	Syne1	8B|A330049M09Rik|BE692247|C130039F11Rik|CPG2|KASH1|Myne1|mKIAA1756|myne-1	spectrin repeat containing, nuclear envelope 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-35377174-1	chr8	35377074	35377274	+	758.5	f1_c57bl6.idr	intron (NM_177741, intron 1 of 1)	intron (NM_177741, intron 1 of 1)	1433.0	NM_177741	244416.0	Mm.247126	NM_177741	ENSMUSG00000046794	Ppp1r3b	6430576E21|AW821953|GL|PTG	protein phosphatase 1, regulatory (inhibitor) subunit 3B	protein-coding	0.754009402057675	1.30953536644379	0.60980360851308	1.08770381516586	1.24165254865359	0.623826966380201	1.57210682406333	0.602417934175488	0.496583291313281	0.750995826322584	0.998431161219273
Merged-chr11-118223837-2	chr11	118223737	118223937	+	751.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	-11095.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-56304273-3	chr8	56304152	56304352	+	684.8222049999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008278, intron 3 of 6)	L1_Rod|LINE|L1	9700.0	NM_008278	15446.0	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-143038738-4	chr7	143038637	143038837	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015529, intron 2 of 3)	ERVL-B4-int|LTR|ERVL	-14013.0	NM_133655	12520.0	Mm.806	NM_133655	ENSMUSG00000037706	Cd81	Tapa-1|Tapa1|Tspan28	CD81 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-136938866-4	chr6	136938771	136938971	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301301, intron 1 of 5)	intron (NM_001301301, intron 1 of 5)	656.0	NM_001301303	11857.0	Mm.2241	NM_007486	ENSMUSG00000030220	Arhgdib	D4|Gdid4|Ly-GDI	Rho, GDP dissociation inhibitor (GDI) beta	protein-coding	4.05703152742662	4.11348947756486	4.10531009677251	4.25760268139496	3.772626413267	4.20636058450125	3.4477574370923	3.33800819969221	-0.567022027068211	0.218853707941045	0.71029504130311
Merged-chr1-194993597-4	chr1	194993373	194993573	+	744.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16514.0	NR_033564	320400.0	Mm.417608	NR_033564	ENSMUSG00000097325	Gm16897	C030002c11rik	predicted gene, 16897	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-47175810-4	chr6	47175707	47175907	+	845.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004357, intron 20 of 23)	intron (NM_001004357, intron 20 of 23)	-68589.0	NM_025771	66797.0	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	-1.01372586573209	-0.994162335729209	-1.00660846485972	-1.00980964752674	-1.01314284338918	-0.348553270733828	-1.00379093403596	-0.832227498114102	3.00260083539824	0.32495838854254	1
Merged-chr5-73564663-3	chr5	73564536	73564736	+	852.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	67785.0	NM_153568	231296.0	Mm.168948	NM_153568	ENSMUSG00000067206	Lrrc66	-	leucine rich repeat containing 66	protein-coding	0.501803819730071	0.322040059251034	0.149263413797521	-0.0207680274015461	0.427916404043984	-0.0113997067107524	-0.016122819991236	-0.0201379651340843	-1.12066732145726	0.60397876376855	1
Merged-chr3-27153932-4	chr3	27153825	27154025	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177626)	promoter-TSS (NM_001177626)	-47.0	NM_001177626	13605.0	Mm.261453	NM_007900	ENSMUSG00000027699	Ect2	AI528536	ect2 oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-47779632-3	chr6	47779572	47779772	+	858.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23980.0	NR_030485	735289.0		NR_030485	ENSMUSG00000076060	Mir704	Mirn704|mir-704|mmu-mir-704	microRNA 704	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-20940490-2	chr5	20940390	20940590	+	703.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080977, intron 1 of 7)	intron (NM_001080977, intron 1 of 7)	-10499.0	NR_030699	320770.0	Mm.491217	NR_030699	ENSMUSG00000101013	A630072M18Rik	Aptr	RIKEN cDNA A630072M18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122345228-2	chr5	122345128	122345328	+	954.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144912, intron 4 of 10)	B1_Mur1|SINE|Alu	8967.0	NM_144912	231724.0	Mm.255587	NM_144912	ENSMUSG00000038569	Rad9b	A630082N15Rik|BC021784	RAD9 checkpoint clamp component B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-123917979-4	chr4	123917857	123918057	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017475, intron 1 of 6)	CpG	524.0	NM_017475	54170.0	Mm.220922	NM_017475	ENSMUSG00000028646	Rragc	AU041672|Gtr2|RAGC|TIB929|YGR163W	Ras-related GTP binding C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98962915-2	chr11	98962815	98963015	+	855.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001176528, intron 1 of 7)	intron (NM_001176528, intron 1 of 7)	-1957.0	NM_001361954	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-11005929-3	chr2	11005831	11006031	+	683.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-166451.0	NM_008859	18761.0	Mm.329993	NM_008859	ENSMUSG00000026778	Prkcq	A130035A12Rik|AW494342|PKC-0|PKC-theta|PKCtheta|Pkcq	protein kinase C, theta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-137788488-2	chr5	137788388	137788588	+	738.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001005426, intron 1 of 16)	CpG	686.0	NM_001005426	381678.0	Mm.332765	NM_001005426	ENSMUSG00000037108	Zcwpw1	Gm1053	zinc finger, CW type with PWWP domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-140783578-3	chr2	140783483	140783683	+	949.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013802, intron 3 of 18)	intron (NM_001013802, intron 3 of 18)	-112107.0	NM_178382	71436.0	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-90464925-1	chr15	90464825	90465025	+	583.0	f1_balb.idr	Intergenic	MTD|LTR|ERVL-MaLR	111215.0	NR_155426	102640415.0	Mm.394352	NR_155426	ENSMUSG00000116204	Gm36480	-	predicted gene, 36480	ncRNA	0.631352364801919	1.55197190838353	0.663153787402658	0.862968916637432	1.12437832276229	1.87558117011919	1.37874232097611	0.653469351106258	1.30355439123795	0.383650566436973	0.874591621156771
Merged-chr12-32692528-2	chr12	32692428	32692628	+	659.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-127807.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-84191069-4	chr17	84190929	84191129	+	964.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_183021, exon 38 of 38)	3' UTR (NM_183021, exon 38 of 38)	-3082.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123713087-2	chr5	123713007	123713207	+	714.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027494, intron 5 of 13)	B3A|SINE|B2	7937.0	NM_027494	70650.0	Mm.279427	NM_027494	ENSMUSG00000029427	Zcchc8	5730565F05Rik	zinc finger, CCHC domain containing 8	protein-coding	1.66025868650089	2.19079175976277	1.96555390281169	2.30081053278339	1.67299825640363	2.04775723931895	2.91770970237451	2.75757958951017	0.938808255629188	0.29567925920266	0.7986401962885
Merged-chr4-116202953-4	chr4	116202858	116203058	+	968.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1K|LTR|ERVL-MaLR	-18458.0	NM_001355585	18710.0	Mm.253819	NM_181585	ENSMUSG00000028698	Pik3r3	AA414954|p55|p55pik	phosphoinositide-3-kinase regulatory subunit 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-80196354-4	chr18	80196250	80196450	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199197, intron 3 of 5)	Charlie1a|DNA|hAT-Charlie	4269.0	NM_199197	68731.0	Mm.186936	NM_199197	ENSMUSG00000024570	Rbfa	1110032A13Rik|AI595940	ribosome binding factor A	protein-coding	6.12963853757272	6.5835133055133	6.25060419037232	6.05937551050214	6.18298750557832	6.00457070012892	6.14161448918485	6.02878573875157	-0.186114551436756	0.396974139685409	0.883497485228651
Merged-chr10-93309354-1	chr10	93309254	93309454	+	637.0	f0_balb.idr	intron (NM_001322265, intron 1 of 4)	(TG)n|Simple_repeat|Simple_repeat	1805.0	NM_001322268	13713.0	Mm.4454	NM_013508	ENSMUSG00000008398	Elk3	D430049E23Rik|Erp|Etrp|Net|Sap-2	ELK3, member of ETS oncogene family	protein-coding	-0.151591052260365	-0.130940799197888	0.714739633291343	-0.142844897156857	-0.150282248982373	-0.12944136653855	0.729351554324659	-0.141931488452262	0.041083046276385	0.986412301813541	1
Merged-chr15-24401879-2	chr15	24401779	24401979	+	624.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	1011885.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-148530467-1	chr6	148530367	148530567	+	591.0	f1_balb.idr	Intergenic	Intergenic	83842.0	NR_045867	622319.0	Mm.491049	NM_001037912	ENSMUSG00000070995	Gm6313	EG622319	predicted gene 6313	ncRNA	0.265617486126751	0.505086358807149	0.2830776883635	0.460176886353469	0.267254179104811	1.28691330398421	0.651731563194671	0.752980878366826	2.73782311590071	0.135598558178329	1
Merged-chr12-112644761-4	chr12	112644678	112644878	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161737)	promoter-TSS (NM_001161737)	-50.0	NM_001161737	30954.0	Mm.289812	NM_013929	ENSMUSG00000064326	Siva1	CD27bp|Siva	SIVA1, apoptosis-inducing factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-8645335-2	chr4	8645235	8645435	+	576.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-45071.0	NM_001277149	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-67171496-2	chr17	67171396	67171596	+	620.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 2 of 32)	intron (NM_001357625, intron 2 of 32)	-145261.0	NR_049205	100885844.0		NR_049205	ENSMUSG00000093508	Mir5709	Gm22041|mir-5709|mmu-mir-5709	microRNA 5709	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-9799143-4	chr1	9799061	9799261	+	927.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177547, intron 1 of 16)	intron (NM_177547, intron 1 of 16)	1031.0	NM_177547	170755.0	Mm.336410	NM_133220	ENSMUSG00000025915	Sgk3	2510015P22Rik|A330005P07Rik|Cisk|fy|fz	serum/glucocorticoid regulated kinase 3	protein-coding	1.98769510862106	2.33649391034579	2.44978825428504	1.97134157907495	2.19592608675405	1.58706550726423	1.89958760556195	1.84614983658983	-0.790755978107811	0.389421739111881	0.878578793881975
Merged-chr11-119922084-2	chr11	119921984	119922184	+	654.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_039557, intron 2 of 2)	intron (NR_039557, intron 2 of 2)	8274.0	NM_001085498	208092.0	Mm.306673	NM_001085498	ENSMUSG00000025371	Chmp6	2400004G01Rik	charged multivesicular body protein 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-62844214-2	chr12	62844114	62844314	+	776.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2B|LINE|L1	156427.0	NR_131949	73309.0	Mm.276558	NR_131949		Spanxn4	1700047L15Rik	SPANX family, member N4	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-80169347-3	chr11	80169251	80169451	+	867.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172133, intron 6 of 10)	intron (NM_172133, intron 6 of 10)	-14521.0	NM_028019	71956.0	Mm.22985	NM_028019	ENSMUSG00000020707	Rnf135	0610037N03Rik|2410006N06Rik	ring finger protein 135	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-22883063-3	chr8	22882973	22883173	+	920.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081149, intron 3 of 17)	intron (NM_001081149, intron 3 of 17)	23534.0	NM_001081149	244349.0	Mm.182776	NM_001081149	ENSMUSG00000031540	Kat6a	1500036M03|9930021N24Rik|MOZ|Myst3|Zfp220	K(lysine) acetyltransferase 6A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152554334-4	chr1	152554229	152554429	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001346119, exon 6 of 18)	exon (NM_001346119, exon 6 of 18)	70888.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-127334615-2	chr2	127334515	127334715	+	875.875	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1544.0	NM_010090	13537.0	Mm.4729	NM_010090	ENSMUSG00000027368	Dusp2	PAC1	dual specificity phosphatase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-122143968-4	chr2	122143858	122144058	+	754.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026251, intron 2 of 17)	MTD|LTR|ERVL-MaLR	-3729.0	NM_009735	12010.0	Mm.163	NM_009735	ENSMUSG00000060802	B2m	Ly-m11|beta2-m|beta2m	beta-2 microglobulin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-42693068-4	chr6	42692970	42693170	+	983.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029930)	promoter-TSS (NM_029930)	30.0	NM_029930	77574.0	Mm.24652	NM_029930	ENSMUSG00000036667	Tcaf1	2810407D09Rik|3321401G04Rik|A230020K05Rik|AI848529|Fam115a	TRPM8 channel-associated factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-55471341-2	chr12	55471241	55471441	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21306.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-119177928-3	chr4	119177815	119178015	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_013848, exon 13 of 13)	3' UTR (NM_013848, exon 13 of 13)	-3720.0	NM_001145936	195522.0	Mm.169620	NM_183140	ENSMUSG00000045268	Zfp691	6430544H17Rik|Znf691	zinc finger protein 691	protein-coding	5.16250075089734	5.88524387703554	5.42618105130475	5.95439828500267	3.35590106956398	2.49026573117306	2.58891446187406	3.35076769535143	-3.32662590922571	3.59332689881594e-14	1.61672760494976e-11
Merged-chr9-118653636-2	chr9	118653536	118653736	+	691.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 5 of 27)	intron (NM_133721, intron 5 of 27)	46927.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	-1.56355737717652	-1.81244775989375	-1.82128546162293	-1.82854501295842	-1.83962066705452	-1.81053259306168	-1.81928479966835	-1.82724555674025	-1.28500227969968	0.715751224811686	1
Merged-chr11-6586833-4	chr11	6586730	6586930	+	882.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146014, intron 4 of 9)	ORR1G|LTR|ERVL-MaLR	19224.0	NM_001081652	192950.0	Mm.337771	NM_001081652	ENSMUSG00000041073	Nacad	D230024G13Rik|mKIAA0363	NAC alpha domain containing	protein-coding	0.891325396129669	1.84235073570172	1.16248789058023	1.13417174422812	1.98500443533637	0.955928261133346	1.99893853323251	1.83295854394806	1.45361236620224	0.252654462981076	0.750119406264342
Merged-chr1-172513564-4	chr1	172513471	172513671	+	861.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7559.0	NM_027972	71870.0	Mm.78373	NM_027972	ENSMUSG00000026546	Cfap45	1700028D05Rik|Ccdc19|Nesg1	cilia and flagella associated protein 45	protein-coding	1.62485862038208	1.15184575783686	1.56235951445047	1.62353916158034	1.6394817696319	0.934726632741448	1.57543538759745	0.907741141639786	-0.675855467603524	0.60117910905623	0.973232025338218
Merged-chr5-43129529-1	chr5	43129429	43129629	+	554.0	f1_balb.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	-103934.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	-0.256891663317864	-0.380288188848397	-0.38396248069513	-0.231609892849764	-0.134092828345325	-0.379457624747132	-0.383153538483542	0.219544601334217	1.774063886063	0.460400579880511	1
Merged-chr14-51026925-3	chr14	51026829	51027029	+	780.56665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14938.0	NM_183032	328401.0	Mm.99528	NM_183032	ENSMUSG00000052382	Rnase9	ESRL|Rak1	ribonuclease, RNase A family, 9 (non-active)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-82526306-4	chr11	82526207	82526407	+	951.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-107046.0	NR_033582	791422.0	Mm.341562	NR_033582	ENSMUSG00000069796	Gm11426	-	predicted gene 11426	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-5806030-4	chr10	5805905	5806105	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025995)	promoter-TSS (NM_025995)	-540.0	NM_025995	67141.0	Mm.197520	NM_025995	ENSMUSG00000019773	Fbxo5	2510044I10Rik|C85305|Emi1|Fbxo31	F-box protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3699034-3	chr12	3698957	3699157	+	791.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162465, intron 9 of 17)	ORR1D1|LTR|ERVL-MaLR	-107923.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47600664-2	chr17	47600564	47600764	+	823.833374	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001081636)	TTS (NM_001081636)	7197.0	NM_007632	12445.0	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-182991132-3	chr1	182991033	182991233	+	746.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36345.0	NM_016928	53791.0	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding	-1.21575676353841	-1.1882771616738	-1.1995328574972	-1.2087786211754	-1.21524488394202	-1.18583800543462	-1.19698481468061	-0.540595393272118	2.74438217975722	0.425994238664144	1
Merged-chr14-13579142-7	chr14	13579084	13579284	+	878.9523929999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163032, intron 3 of 4)	intron (NM_001163032, intron 3 of 4)	-91692.0	NM_177624	218739.0	Mm.39919	NM_177624	ENSMUSG00000044772	Sntn	A430083B19Rik	sentan, cilia apical structure protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-16208281-2	chr19	16208181	16208381	+	600.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_008139, intron 1 of 6)	B4A|SINE|B4	44183.0	NR_033228	595139.0	Mm.405662	NR_033228		E030024N20Rik	9030417F11Rik|Ppia-ps8	peptidylprolyl isomerase A pseudogene 8	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-56546186-2	chr19	56546086	56546286	+	836.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153440, intron 2 of 9)	intron (NR_153440, intron 2 of 9)	1936.0	NM_001360437	55947.0	Mm.2805	NM_018831	ENSMUSG00000025077	Dclre1a	2810043H12Rik|AU022226|Pso2|Smn1a|Snm1|mKIAA0086	DNA cross-link repair 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-90892167-2	chr5	90892067	90892267	+	972.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008176, intron 3 of 3)	intron (NM_008176, intron 3 of 3)	922.0	NM_008176	14825.0	Mm.21013	NM_008176	ENSMUSG00000029380	Cxcl1	Fsp|Gro1|KC|Mgsa|N51|Scyb1|gro	chemokine (C-X-C motif) ligand 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80092633-4	chr7	80092534	80092734	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001146000, exon 6 of 6)	3' UTR (NM_001146000, exon 6 of 6)	-17377.0	NR_045695	100859962.0	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-78923271-2	chr11	78923171	78923371	+	934.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010927, intron 2 of 26)	intron (NM_010927, intron 2 of 26)	-1469.0	NM_001313921	18126.0	Mm.2893	NM_010927	ENSMUSG00000020826	Nos2	MAC-NOS|NOS-II|Nos-2|Nos2a|i-NOS|iNOS	nitric oxide synthase 2, inducible	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6871803-4	chr19	6871702	6871902	+	977.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13591.0	NM_001081291	78317.0	Mm.329596	NM_198008	ENSMUSG00000047810	Ccdc88b	2610041P08Rik|Ccdc88	coiled-coil domain containing 88B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-74304076-4	chr1	74303979	74304179	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027154, intron 1 of 11)	CpG	257.0	NM_027154	69660.0	Mm.261182	NM_027154	ENSMUSG00000006301	Tmbim1	2310061B02Rik|AA960455|AU024746|C78899|RECS1|Tmbib1|mKIAA4161	transmembrane BAX inhibitor motif containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-25541331-2	chr14	25541231	25541431	+	599.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 3 of 23)	intron (NM_183208, intron 3 of 23)	6892.0	NR_037236	100526533.0		NR_037236	ENSMUSG00000093081	Mir3075	mir-3075|mmu-mir-3075	microRNA 3075	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-102578875-4	chr11	102578778	102578978	+	977.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040286, exon 2 of 3)	non-coding (NR_040286, exon 2 of 3)	241.0	NR_040286	100040792.0	Mm.277966	NR_040286	ENSMUSG00000078640	Gm11627	-	predicted gene 11627	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135779141-2	chr5	135779041	135779241	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289554)	promoter-TSS (NM_001289554)	492.0	NM_008617	17448.0	Mm.297096	NM_008617	ENSMUSG00000019179	Mdh2	MDH|Mdh-2|Mor-1|Mor1	malate dehydrogenase 2, NAD (mitochondrial)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-61846074-2	chr5	61845974	61846174	+	556.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37231.0	NM_019468	14380.0	Mm.347430	NM_019468	ENSMUSG00000089992	G6pd2	G6pdx-ps1|Gpd-2|Gpd2	glucose-6-phosphate dehydrogenase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-174108575-1	chr2	174108475	174108675	+	728.0	f1_balb.idr	Intergenic	B4A|SINE|B4	-1776.0	NM_213733	228961.0	Mm.295629	NM_213733	ENSMUSG00000039263	Npepl1	BC023239|C85514|mKIAA1974	aminopeptidase-like 1	protein-coding	-0.651980856463372	-0.890416768689586	-0.897323658137576	-0.899291817901604	-0.54136577911218	-0.706997389899893	-0.896759410058493	-0.898948619133465	1.02294153341221	0.727143502332074	1
Merged-chr18-66270834-3	chr18	66270746	66270946	+	942.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178793, intron 2 of 10)	intron (NM_178793, intron 2 of 10)	20992.0	NM_178793	320924.0	Mm.442049	NM_178793	ENSMUSG00000046318	Ccbe1	4933426F18Rik|9430093N24Rik|mKIAA1983	collagen and calcium binding EGF domains 1	protein-coding	0.407305990989952	0.3524929850063	0.718111200920222	0.150538521717976	0.289174470665927	0.779378880215481	0.156440069634675	0.151340443555003	-0.322698177773944	0.865266470511963	1
Merged-chr3-9034685-4	chr3	9034580	9034780	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27284.0	NR_040597	75149.0	Mm.399324	NR_040597	ENSMUSG00000103116	4930539M17Rik	-	RIKEN cDNA 4930539M17 gene	ncRNA	6.88580787476733	7.0947085209519	7.16946001724658	6.96401976821598	5.41424707904563	5.14458143278767	5.72446463508019	3.94863198988432	-1.99745380102102	4.94518528687149e-13	1.77996999215652e-10
Merged-chr2-155406357-2	chr2	155406257	155406457	+	733.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_019825, exon 10 of 14)	exon (NM_019825, exon 10 of 14)	24501.0	NM_178111	68728.0	Mm.293605	NM_178111	ENSMUSG00000038375	Trp53inp2	1110029F20Rik|Tp53inp2	transformation related protein 53 inducible nuclear protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-27226978-4	chr3	27226868	27227068	+	885.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 3 of 4)	intron (NM_178772, intron 3 of 4)	43964.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-95264858-5	chr10	95264623	95264823	+	728.299988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001330138, intron 2 of 2)	intron (NM_001330138, intron 2 of 2)	58986.0	NM_001330138	12905.0	Mm.473739	NM_009950	ENSMUSG00000045867	Cradd	RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-121641449-3	chr14	121641344	121641544	+	626.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081039, intron 11 of 53)	intron (NM_001081039, intron 11 of 53)	56973.0	NM_001347596	105445.0	Mm.378591	NM_134074	ENSMUSG00000025558	Dock9	AA959601|AW538057|B230309H04Rik|D14Wsu89e|Zizimin1|mKIAA1058	dedicator of cytokinesis 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-88727355-4	chr10	88727258	88727458	+	908.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3743.0	NM_001037166	237433.0	Mm.478763	NM_001037166		Gm4925	EG237433	predicted gene 4925	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-29716669-2	chr15	29716569	29716769	+	571.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur2|LINE|L1	-3265.0	NR_039542	100628607.0		NR_039542	ENSMUSG00000092639	Mir3964	mmu-mir-3964|mu-mir-3964	microRNA 3964	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27678574-2	chr2	27678474	27678674	+	804.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011305, intron 1 of 9)	intron (NM_011305, intron 1 of 9)	1373.0	NM_011305	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-118007431-2	chr2	118007331	118007531	+	892.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_126479, intron 8 of 9)	B1F|SINE|Alu	103771.0	NR_126479	329496.0	Mm.235844	NR_126479	ENSMUSG00000087203	Gm13986	C230060E24	predicted gene 13986	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-113494927-2	chr13	113494827	113495027	+	896.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045501, intron 1 of 6)	intron (NR_045501, intron 1 of 6)	7917.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-50872852-2	chr10	50872752	50872952	+	727.900024	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22799.0	NM_011376	20464.0	Mm.4774	NM_011376	ENSMUSG00000019913	Sim1	bHLHe14|mSIM1	single-minded family bHLH transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19577492-6	chr7	19577359	19577559	+	815.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_022409, exon 1 of 3)	exon (NM_022409, exon 1 of 3)	172.0	NM_022409	63872.0	Mm.23310	NM_022409	ENSMUSG00000011267	Zfp296	2210018A16Rik|Znf296	zinc finger protein 296	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-116176581-4	chr4	116176484	116176684	+	849.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3212.0	NM_001099295	67323.0	Mm.45442	NM_001099295	ENSMUSG00000078593	1700042G07Rik	-	RIKEN cDNA 1700042G07 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-3158787-4	chr11	3158726	3158926	+	983.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030207, intron 10 of 32)	B1_Mur1|SINE|Alu	34637.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-85025203-3	chr8	85025104	85025304	+	959.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357202)	promoter-TSS (NM_001357202)	83.0	NM_001357203	56495.0	Mm.41475	NM_019652	ENSMUSG00000052456	Asna1	1810048H22Rik|ArsA	arsA arsenite transporter, ATP-binding, homolog 1 (bacterial)	protein-coding	2.06422786967922	2.73508001482117	2.64514330210175	2.57242753489301	2.8284071661833	3.0695100199358	2.66537004286462	2.96637873605872	0.735056084216609	0.299893503989044	0.801244565215384
Merged-chr7-141467392-4	chr7	141467282	141467482	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009842)	promoter-TSS (NM_009842)	20.0	NM_001111049	12476.0	Mm.30246	NM_009842	ENSMUSG00000025510	Cd151	PETA-3|SFA-1|Tspan24	CD151 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-149706201-4	chr4	149706152	149706352	+	801.854187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	-4623.0	NM_001029837	18707.0	Mm.229108	NM_008840	ENSMUSG00000039936	Pik3cd	2410099E07Rik|2610208K16Rik|AW545373|p110delta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding	3.40677637098867	2.98830167318386	3.00507091906599	3.64230678575897	3.23180697846467	3.34568556339304	3.63852308522468	2.81883100996478	-0.0133738699427541	0.98181188739294	0.998431161219273
Merged-chr19-21476977-4	chr19	21476878	21477078	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4317.0	NM_010266	14544.0	Mm.45054	NM_010266	ENSMUSG00000058624	Gda	AU015411|AW047581|GAH	guanine deaminase	protein-coding	3.49197305202884	5.24542958163111	5.52822585170221	2.82592190899117	3.9844355052344	4.51004054835248	3.75454176891695	3.44925560747193	-0.920675345869538	0.115229025828466	0.531964895394323
Merged-chr10-121375458-4	chr10	121375364	121375564	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029364, intron 3 of 13)	intron (NM_029364, intron 3 of 13)	10374.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	4.37925158505707	4.24561671187698	4.52977802896989	5.31343723894712	4.86224997496712	4.41553923611647	5.42178099156631	5.13860086815029	0.388217748846962	0.312091392603239	0.813662000967767
Merged-chr4-117543682-2	chr4	117543582	117543782	+	556.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6642.0	NM_001356404	140546.0	Mm.235891	NM_080469	ENSMUSG00000033423	Eri3	PINT1|Prnpip1	exoribonuclease 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-45786897-4	chr16	45786810	45787010	+	911.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357078, intron 5 of 16)	intron (NM_001357078, intron 5 of 16)	-43955.0	NM_172511	213012.0	Mm.247453	NM_172511	ENSMUSG00000033157	Abhd10	-	abhydrolase domain containing 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-62250299-4	chr18	62250154	62250354	+	752.395813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	70154.0	NM_001013754	225609.0	Mm.296917	NM_001013754	ENSMUSG00000054589	Gm9949	EG225609	predicted gene 9949	protein-coding	3.32063696457651	4.05959263631596	4.23357614054721	3.10221568935453	4.66235211721667	3.76984711087529	3.8851769635827	4.59152236592763	0.740018293820475	0.135778840071283	0.575509134423666
Merged-chr15-9094182-3	chr15	9094076	9094276	+	784.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040395, intron 6 of 12)	MLT1F1|LTR|ERVL-MaLR	22916.0	NM_001040395	68646.0	Mm.244226	NM_001040395	ENSMUSG00000022253	Nadk2	MNADK|Nadkd1	NAD kinase 2, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106742437-4	chr11	106742354	106742554	+	908.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8772.0	NM_001271375	380732.0	Mm.343952	NM_001033435	ENSMUSG00000040528	Milr1	Allergin-1|Gm885|Mca32	mast cell immunoglobulin like receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-16338227-2	chr19	16338127	16338327	+	892.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008139, intron 5 of 6)	intron (NM_008139, intron 5 of 6)	-23223.0	NR_105832	102465218.0		NR_105832	ENSMUSG00000098718	Mir496b	Gm28028|mmu-mir-496b	microRNA 496b	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131071714-1	chr1	131071614	131071814	+	547.0	f1_c57bl6.idr	intron (NM_008551, intron 1 of 9)	intron (NM_008551, intron 1 of 9)	26129.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-112341523-4	chr5	112341422	112341622	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153106, intron 1 of 6)	intron (NR_153106, intron 1 of 6)	1518.0	NM_001359388	70118.0	Mm.172947	NM_027323	ENSMUSG00000029346	Srrd	2810002G02Rik|Srr1	SRR1 domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-5456799-1	chr15	5456699	5456899	+	668.0	f0_balb.idr	Intergenic	ID_B1|SINE|B4	-39519.0	NR_045274	71432.0	Mm.291087	NR_045274	ENSMUSG00000110018	5430437J10Rik	-	RIKEN cDNA 5430437J10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-28765350-1	chr11	28765250	28765450	+	753.0	f1_balb.idr	Intergenic	Lx|LINE|L1	1622.0	NR_029828	387213.0		NR_029828	ENSMUSG00000065415	Mir217	Mirn217|mir-217|mmu-mir-217	microRNA 217	ncRNA	0.314259317978205	0.0348712118043656	0.0276929967251849	1.05227464029493	0.0141459233375485	0.590250412417075	0.0292818868333022	0.0230873467407915	-1.53503347524425	0.476363221667622	1
Merged-chr15-34495314-4	chr15	34495209	34495409	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008287)	promoter-TSS (NM_008287)	-2.0	NM_026340	67724.0	Mm.248779	NM_026340	ENSMUSG00000022325	Pop1	4932434G09Rik	processing of precursor 1, ribonuclease P/MRP family, (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-45685344-5	chr17	45685229	45685429	+	839.599976	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198167, intron 1 of 23)	CpG	889.0	NM_198167	224807.0	Mm.157904	NM_198167	ENSMUSG00000036026	Tmem63b	BC026370	transmembrane protein 63b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-58907621-1	chr4	58907521	58907721	+	557.0	f1_balb.idr	intron (NM_001355697, intron 1 of 49)	intron (NM_001355697, intron 1 of 49)	4309.0	NM_001355697	230249.0	Mm.234801	NM_172381	ENSMUSG00000050812	AI314180	AW558785|BB181316|Ecpas|mKIAA0368	expressed sequence AI314180	protein-coding	0.48888576327262	0.519585921085009	1.43186293000674	0.686317732612697	0.796942353013931	0.521811020362757	1.14692732605174	1.09864895199933	0.258449834695238	0.874914312658846	0.998431161219273
Merged-chr17-27119379-3	chr17	27119270	27119470	+	765.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_080553, exon 55 of 58)	exon (NM_080553, exon 55 of 58)	14521.0	NM_026063	67267.0	Mm.272389	NM_026063	ENSMUSG00000024208	Uqcc2	2900010M23Rik|Cbp6|M19|Mnf1	ubiquinol-cytochrome c reductase complex assembly factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-73215797-3	chr14	73215699	73215899	+	750.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009029, intron 18 of 26)	intron (NM_009029, intron 18 of 26)	-8948.0	NR_030459	751541.0		NR_030459	ENSMUSG00000076121	Mir687	Mirn687|mir-687|mmu-mir-687	microRNA 687	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-23748266-4	chr17	23748165	23748365	+	857.491699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015472)	promoter-TSS (NR_015472)	-971.0	NR_015472	638247.0	Mm.382600	NR_015472	ENSMUSG00000097006	9530082P21Rik	E030034P13Rik	RIKEN cDNA 9530082P21 gene	ncRNA	2.37525133132643	2.54067073084031	2.45398790295027	2.80767591890841	2.84454899576417	3.46771609053971	1.76339703068685	2.25937537426474	0.384448604695948	0.630210054724223	0.981387068864916
Merged-chr9-66879700-4	chr9	66879586	66879786	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173413, intron 1 of 7)	L1MA4|LINE|L1	40019.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-61446919-2	chr18	61446819	61447019	+	625.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37688.0	NR_045419	442846.0	Mm.417648	NR_045419		A530050N04Rik	-	RIKEN cDNA A530050N04 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94923467-4	chr10	94923371	94923571	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018797, intron 1 of 30)	intron (NM_018797, intron 1 of 30)	21107.0	NM_018797	54712.0	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-35059818-1	chr9	35059718	35059918	+	582.0	f1_balb.idr	intron (NM_009178, intron 1 of 10)	intron (NM_009178, intron 1 of 10)	-56910.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	-0.433316870242684	-0.420191885281249	0.157501769491015	-0.427804637316317	-0.432496433035409	-0.419224130895468	-0.423539779673996	0.223916229278532	0.218869643001986	0.935677228004362	1
Merged-chr3-88087845-3	chr3	88087746	88087946	+	714.700012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033484, intron 4 of 37)	B2_Mm2|SINE|B2	5795.0	NM_001033484	404710.0	Mm.331133	NM_001033484	ENSMUSG00000028068	Iqgap3	AI593484|D030034H08	IQ motif containing GTPase activating protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36320160-4	chr18	36320054	36320254	+	971.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	20053.0	NM_001267796	109169.0	Mm.426423	NM_001267796	ENSMUSG00000110185	Igip	6330403M23Rik	IgA inducing protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-145898709-3	chr2	145898584	145898784	+	649.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4557.0	NM_026425	67877.0	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-181077541-3	chr1	181077434	181077634	+	894.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26297.0	NM_001033819	619326.0	Mm.355174	NM_001033819	ENSMUSG00000038768	9130409I23Rik	-	RIKEN cDNA 9130409I23 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-114684637-2	chr5	114684537	114684737	+	604.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019821, intron 1 of 4)	intron (NM_019821, intron 1 of 4)	6298.0	NM_019821	56356.0	Mm.275766	NM_019821	ENSMUSG00000011884	Gltp	1110001F24Rik|C76925|C77564	glycolipid transfer protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106418836-4	chr11	106418733	106418933	+	973.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_023913, exon 10 of 22)	exon (NM_023913, exon 10 of 22)	-36052.0	NM_010494	15896.0	Mm.394	NM_010494	ENSMUSG00000001029	Icam2	CD102|Icam-2|Ly-60	intercellular adhesion molecule 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-118730648-4	chr2	118730543	118730743	+	921.8583369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2205.0	NM_001290790	18796.0	Mm.215156	NM_177568	ENSMUSG00000040061	Plcb2	AI550384|B230205M18Rik|B230399N12	phospholipase C, beta 2	protein-coding	2.13622570165489	1.09685860969355	1.67059278496535	1.05551417099748	1.68066287015189	1.74361590205067	2.50362196501474	1.76918033210192	1.09356490936805	0.339763395733542	0.840511592167224
Merged-chr11-26389768-3	chr11	26389687	26389887	+	792.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001277273, intron 1 of 13)	intron (NM_001277273, intron 1 of 13)	2703.0	NR_102382	67030.0	Mm.18875	NM_025923	ENSMUSG00000004018	Fancl	2010322C19Rik|AW554273|B230118H11Rik|Phf9|Pog|gcd	Fanconi anemia, complementation group L	protein-coding	1.03588871934915	1.33868210205318	0.49737505461199	1.57198106905586	0.475549369269423	0.511359173289293	0.49991319744967	0.856300878272779	-3.11369393191374	0.075678376768743	0.416803246943438
Merged-chr14-10439557-4	chr14	10439452	10439652	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360141, intron 4 of 9)	intron (NM_001360141, intron 4 of 9)	13906.0	NM_001308286	14198.0	Mm.397619	NM_010210	ENSMUSG00000060579	Fhit	AW045638|Fra14A2	fragile histidine triad gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-139310751-4	chr4	139310622	139310822	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025337)	promoter-TSS (NM_025337)	-14.0	NM_145384	212555.0	Mm.45131	NM_145384	ENSMUSG00000028744	Pqlc2	BC019216	PQ loop repeat containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-112611635-2	chr12	112611535	112611735	+	780.333374	f1_balb.idr|f1_c57bl6.idr	exon (NM_198411, exon 21 of 23)	exon (NM_198411, exon 21 of 23)	-8412.0	NM_007421	11565.0	Mm.3440	NM_007421	ENSMUSG00000011148	Adssl1	AI528595|Adss|Adss1	adenylosuccinate synthetase like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85496989-4	chr12	85496897	85497097	+	996.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	23107.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-61908651-4	chr8	61908546	61908746	+	987.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5952.0	NM_001293772	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-155384031-1	chr2	155383931	155384131	+	1000.0	f1_c57bl6.idr	intron (NM_178111, intron 1 of 3)	B1_Mus2|SINE|Alu	2175.0	NM_178111	68728.0	Mm.293605	NM_178111	ENSMUSG00000038375	Trp53inp2	1110029F20Rik|Tp53inp2	transformation related protein 53 inducible nuclear protein 2	protein-coding	1.33490464372354	1.02154735976541	0.760469526014563	1.13882656154632	1.08597129986518	1.54624942445542	0.764138679040804	2.1865818126005	1.57680635115943	0.243210137052988	0.740751247850617
Merged-chr8-128664842-2	chr8	128664742	128664942	+	671.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20812.0	NM_010578	16412.0	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-123040278-4	chr8	123040190	123040390	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 1 of 12)	intron (NM_001081379, intron 1 of 12)	1994.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-12330454-2	chr15	12330354	12330554	+	758.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025673, intron 1 of 3)	B1_Mm|SINE|Alu	8958.0	NM_025673	66629.0	Mm.157655	NM_025673	ENSMUSG00000022200	Golph3	4733401N08Rik|5730410D03Rik|AW413496	golgi phosphoprotein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-6826756-2	chr17	6826656	6826856	+	724.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-43976.0	NM_009510	22350.0	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-25881171-2	chr18	25881071	25881271	+	558.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-127014.0	NM_001362334	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-27206408-3	chr5	27206315	27206515	+	892.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207282, intron 1 of 25)	intron (NM_207282, intron 1 of 25)	-55520.0	NM_001136060	13483.0	Mm.42078	NM_010075	ENSMUSG00000061576	Dpp6	B930011P16Rik|D5Buc3|D5Buc4|D5Buc5|DPP VI|Dpp-6|Gm1377|In(5)6H-p|Peplb|Rw	dipeptidylpeptidase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-10566660-3	chr17	10566582	10566782	+	753.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027032, intron 4 of 4)	intron (NM_027032, intron 4 of 4)	110466.0	NR_077238	319750.0	Mm.383485	NR_077237	ENSMUSG00000089633	A230009B12Rik	-	RIKEN cDNA A230009B12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-154568730-2	chr2	154568630	154568830	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007891, intron 1 of 6)	intron (NM_007891, intron 1 of 6)	696.0	NM_001291105	13555.0	Mm.18036	NM_007891	ENSMUSG00000027490	E2f1	E2F-1|Tg(Wnt1-cre)2Sor|mKIAA4009	E2F transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97281901-3	chr6	97281783	97281983	+	798.095215	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29103.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	2.82490678792255	2.82387862332793	2.52803547600754	2.2173872816771	2.24789020112353	2.63203274398355	2.14428757886985	2.35655124003748	-0.591132188179825	0.443697231876518	0.912075280648966
Merged-chr12-34683612-4	chr12	34683516	34683716	+	952.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271386, intron 3 of 27)	intron (NM_001271386, intron 3 of 27)	-154727.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-136141679-4	chr1	136141575	136141775	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039472, intron 1 of 34)	intron (NM_001039472, intron 1 of 34)	10285.0	NR_153829	16565.0	Mm.276135	NM_019962	ENSMUSG00000041642	Kif21b	2610511N21Rik|mKIAA0449	kinesin family member 21B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-13987363-2	chr18	13987263	13987463	+	581.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14630.0	NM_145492	225207.0	Mm.40325	NM_145492	ENSMUSG00000024420	Zfp521	B930086A16Rik|Evi3|Znf521	zinc finger protein 521	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-51923698-2	chr11	51923598	51923798	+	673.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	-43933.0	NM_029976	52626.0	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-106789090-4	chr9	106788987	106789187	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_030730, exon 1 of 22)	5' UTR (NM_030730, exon 1 of 22)	126.0	NM_030730	81000.0	Mm.246689	NM_030730	ENSMUSG00000040661	Rad54l2	Arip4|D130058C05|G630026H09Rik|Srisnf2l	RAD54 like 2 (S. cerevisiae)	protein-coding	3.81331402861809	3.91380576309965	4.6069999531293	3.67766033376082	3.8441494708853	4.34410268072488	4.26542720031346	3.24270630641658	-0.0948288420433402	0.845411300076852	0.998431161219273
Merged-chr17-34331471-3	chr17	34331369	34331569	+	912.288879	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033978, intron 1 of 4)	intron (NM_001033978, intron 1 of 4)	5794.0	NM_001033978	381091.0	Mm.139204	NM_001033978	ENSMUSG00000067341	H2-Eb2	A130038H09Rik|H-2Eb2|Ia-5|Ia5|Iebeta2	histocompatibility 2, class II antigen E beta2	protein-coding	-1.84456824087626	-1.81369603968745	-1.82303204814395	-1.83070092346192	-1.84240106943552	-1.51787681909439	-1.82091858046888	-1.82932819844659	1.64481029852639	0.639921510788462	1
Merged-chr3-95014114-2	chr3	95014014	95014214	+	862.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357863, intron 1 of 8)	intron (NM_001357863, intron 1 of 8)	1124.0	NM_030074	78266.0	Mm.389478	NM_030074	ENSMUSG00000019338	Zfp687	4931408L03Rik|Znf687|mKIAA1441	zinc finger protein 687	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-8688494-2	chr8	8688394	8688594	+	636.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_176849, intron 1 of 3)	intron (NM_176849, intron 1 of 3)	1668.0	NR_106114	102465762.0		NR_106114	ENSMUSG00000098917	Mir7654	Gm27748|mmu-mir-7654	microRNA 7654	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135571555-6	chr5	135571525	135571725	+	902.89447	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356630, intron 2 of 3)	intron (NM_001356630, intron 2 of 3)	1424.0	NM_019577	56221.0	Mm.31505	NM_019577	ENSMUSG00000004814	Ccl24	CKb-6|MPIF-2|Scya24	chemokine (C-C motif) ligand 24	protein-coding	0.92484146916009	1.18559965555399	0.661590487253674	0.653999756122748	1.24604803232091	0.879713788450128	1.14932632031491	1.32359746699276	1.41861517081334	0.33494490272464	0.835388696663455
Merged-chr19-46501464-6	chr19	46501369	46501569	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053100)	promoter-TSS (NM_053100)	-179.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119058149-4	chr11	119058047	119058247	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17234.0	NM_013926	30951.0	Mm.99953	NM_013926	ENSMUSG00000025578	Cbx8	Pc3	chromobox 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-48418435-4	chr17	48418334	48418534	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009694)	TTS (NM_009694)	7984.0	NM_001357904	106821.0	Mm.203943	NM_207219	ENSMUSG00000040771	Oard1	AI314976|AW558560	O-acyl-ADP-ribose deacylase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-60807442-4	chr18	60807328	60807528	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042605, intron 1 of 8)	intron (NM_001042605, intron 1 of 8)	3579.0	NM_010545	16149.0	Mm.439737	NM_010545	ENSMUSG00000024610	Cd74	CLIP|DHLAG|HLADG|Ia-GAMMA|Ii	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	protein-coding	4.43090207662078	3.97317491047119	5.00117761362939	4.47182045563842	5.07714621248281	4.1655571627769	5.13656932200695	4.39416981638702	0.303048315285305	0.452257826255913	0.918447765642932
Merged-chr11-11810580-2	chr11	11810454	11810654	+	760.916626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1592.0	NM_001163360	60530.0	Mm.236114	NM_021891	ENSMUSG00000035455	Fignl1	-	fidgetin-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-24483009-2	chr7	24482909	24483109	+	726.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153112, intron 1 of 8)	intron (NM_153112, intron 1 of 8)	986.0	NM_153112	260299.0	Mm.178322	NM_153112	ENSMUSG00000054793	Cadm4	Igdf4c|Igsf4c|Tsll2	cell adhesion molecule 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-31130035-2	chr3	31129935	31130135	+	880.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19885.0	NM_008770	18417.0	Mm.4425	NM_008770	ENSMUSG00000037625	Cldn11	Claudin-11|Claudin11|Osp|Otm	claudin 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-103760576-2	chr2	103760476	103760676	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153126, intron 1 of 28)	intron (NM_153126, intron 1 of 28)	694.0	NM_153126	98956.0	Mm.288005	NM_153126	ENSMUSG00000027185	Nat10	AI429152	N-acetyltransferase 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-113122526-3	chr5	113122420	113122620	+	689.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172884, intron 1 of 7)	MIR|SINE|MIR	16065.0	NM_001347397	243219.0	Mm.160131	NM_172884	ENSMUSG00000051339	2900026A02Rik	8430408O14Rik|A530094D01|AW539426|Gm449|Kiaa1671|mKIAA1671	RIKEN cDNA 2900026A02 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-62178748-9	chr18	62178699	62178899	+	907.3110960000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007420, exon 1 of 1)	exon (NM_007420, exon 1 of 1)	1182.0	NM_007420	11555.0	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	2.66561088341867	2.44938062565669	2.36587290419172	1.31060400877252	1.83210478075668	2.4677043661484	1.80514924926863	2.59678361337849	-0.162560425201326	0.863097101853664	0.998431161219273
Merged-chr7-45491084-2	chr7	45490984	45491184	+	913.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290999, intron 1 of 9)	intron (NM_001290999, intron 1 of 9)	-2279.0	NM_027903	71755.0	Mm.34208	NM_027903	ENSMUSG00000011382	Dhdh	1300018L09Rik|AA591799|B830008H07Rik|Xld-1|Xld1	dihydrodiol dehydrogenase (dimeric)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-97535124-4	chr16	97535037	97535237	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_003508)	promoter-TSS (NR_003508)	-944.0	NR_003508	17858.0	Mm.14157	NM_013606	ENSMUSG00000023341	Mx2	AI528743|Mx-2	MX dynamin-like GTPase 2	protein-coding	5.20830603067316	5.2018397560146	5.1197443966152	4.91733498234901	5.2451402894111	5.23573709365168	5.84648097735426	5.24485246437386	0.350213410680714	0.240026366116167	0.736540734959326
Merged-chr10-25117779-1	chr10	25117679	25117879	+	846.6666869999999	f0_balb.idr	Intergenic	Intergenic	82391.0	NM_001347460	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-8345796-4	chr6	8345820	8346020	+	924.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302354, intron 2 of 3)	(GGGA)n|Simple_repeat|Simple_repeat	86632.0	NM_001302353	100036521.0	Mm.446106	NM_001302353	ENSMUSG00000089862	Umad1	Gm16039	UMAP1-MVP12 associated (UMA) domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-102966637-2	chr15	102966537	102966737	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010462)	promoter-TSS (NM_010462)	-159.0	NM_010462	209448.0	Mm.31665	NM_010462	ENSMUSG00000022484	Hoxc10	AI506621|Hox-3.6	homeobox C10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-60749249-2	chr18	60749149	60749349	+	664.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008306)	promoter-TSS (NM_008306)	-584.0	NM_008306	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-142821427-2	chr5	142821327	142821527	+	683.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4040.0	NM_001122730	231861.0	Mm.354649	NM_178242	ENSMUSG00000039477	Tnrc18	BC025631|EG381742|Zfp469	trinucleotide repeat containing 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-10438764-2	chr8	10438664	10438864	+	762.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001319151, intron 17 of 34)	intron (NM_001319151, intron 17 of 34)	284853.0	NM_001319151	244281.0	Mm.422761	NM_001081397	ENSMUSG00000039057	Myo16	BM140241|C230040D10Rik|Gm1105|NYAP3|mKIAA0865	myosin XVI	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-10355763-1	chr17	10355663	10355863	+	610.0	f0_balb.idr	Intergenic	B4|SINE|B4	31161.0	NR_045461	76634.0	Mm.491052	NR_045461	ENSMUSG00000099384	1700110C19Rik	-	RIKEN cDNA 1700110C19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-4880980-2	chr2	4880880	4881080	+	851.7999880000001	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175400)	promoter-TSS (NM_175400)	-584.0	NM_175400	109079.0	Mm.34329	NM_175400	ENSMUSG00000026662	Sephs1	1110046B24Rik|AA589574|AI505014|AW111620|SELD|SPS|SPS1	selenophosphate synthetase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-96210653-2	chr7	96210553	96210753	+	898.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011858)	promoter-TSS (NM_011858)	16.0	NM_011858	23966.0	Mm.254610	NM_011858	ENSMUSG00000048078	Tenm4	Doc4|ELM2|Odz4|R75022|Ten-m4|l(7)-3Rn|l7Rn3|mKIAA1302	teneurin transmembrane protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101981228-4	chr11	101981170	101981370	+	904.9249880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028207, intron 2 of 2)	B4A|SINE|B4	3521.0	NM_028207	72349.0	Mm.196295	NM_028207	ENSMUSG00000003518	Dusp3	2210015O03Rik|5031436O03Rik|T-DSP11|VHR	dual specificity phosphatase 3 (vaccinia virus phosphatase VH1-related)	protein-coding	0.496461061953638	0.578793487079666	0.348846974277894	1.31660610627911	0.501755474066228	0.360421110556972	0.350943363949441	1.24622266634639	-0.325706153610948	0.851498323769864	1
Merged-chr17-34856011-2	chr17	34855911	34856111	+	620.666626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001142706)	TTS (NM_001142706)	1621.0	NR_105938	102465587.0		NR_105938	ENSMUSG00000098445	Mir6972	Gm27810|mmu-mir-6972	microRNA 6972	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-138972858-4	chr4	138972758	138972958	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029857)	promoter-TSS (NM_029857)	-47.0	NM_029857	77056.0	Mm.122336	NM_029857	ENSMUSG00000041143	Tmco4	4632413C14Rik|AI430825	transmembrane and coiled-coil domains 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-4341631-3	chr10	4341533	4341733	+	879.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031185, intron 2 of 3)	intron (NM_031185, intron 2 of 3)	45842.0	NM_001359811	381990.0	Mm.262466	NM_001033466	ENSMUSG00000075327	Zbtb2	Gm1103	zinc finger and BTB domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-121053949-2	chr6	121053860	121054060	+	567.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001270475, intron 1 of 31)	intron (NM_001270475, intron 1 of 31)	-10504.0	NR_138098	100043793.0	Mm.448053	NR_138098		Gm4651	-	predicted gene 4651	ncRNA	-0.0242774225365686	0.00129809662756417	-0.00694730730852072	-0.0133956891050439	0.986440445914258	0.00313981587147821	0.9938306525691	-0.0122635526706978	4.3671086091628	0.0474095255056808	1
Merged-chr10-68134276-1	chr10	68134176	68134376	+	636.0	f0_balb.idr	intron (NM_023598, intron 5 of 9)	intron (NM_023598, intron 5 of 9)	144450.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	1.41173411924732	1.35898374619797	1.30614022944196	0.745738313068412	1.32057063389804	1.93953651953992	0.760658526558274	0.747785248528639	0.270613989513622	0.851168625586925	0.998431161219273
Merged-chr6-122669611-4	chr6	122669523	122669723	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37866.0	NM_001289831	71950.0	Mm.6047	NM_028016	ENSMUSG00000012396	Nanog	2410002E02Rik|ENK|ecat4	Nanog homeobox	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-54687767-4	chr13	54687662	54687862	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146025)	promoter-TSS (NM_001146025)	46.0	NM_001146025	105239.0	Mm.25366	NM_134064	ENSMUSG00000034928	Rnf44	AI854545|mKIAA1100	ring finger protein 44	protein-coding	0.169974921124108	0.22951676779461	1.89811514696151	0.19604824667755	0.17396473394406	0.233584470591451	1.92017820636478	0.198694761648558	0.0414054038209894	0.989916892079963	0.998431161219273
Merged-chr19-10866623-2	chr19	10866523	10866723	+	648.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_133804, exon 3 of 11)	exon (NM_133804, exon 3 of 11)	3156.0	NM_133804	98170.0	Mm.490254	NM_133804	ENSMUSG00000024736	Tmem132a	6720481D13Rik|Hspa5bp1|Orai1|R74613	transmembrane protein 132A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-136684282-2	chr6	136684155	136684355	+	885.0	f0_c57.idr|f1_balb.idr	Intergenic	Intergenic	-22362.0	NM_025806	66857.0	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	3.76614064703825	4.58338084827892	1.66777743889149	4.40969057670648	3.19520627344246	3.99187816187717	2.62370568572079	3.07159288806365	-0.943909107205683	0.178186307010396	0.64849726335007
Merged-chr16-20097517-4	chr16	20097420	20097620	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029436)	promoter-TSS (NM_029436)	-34.0	NM_029436	75785.0	Mm.392450	NM_029436	ENSMUSG00000062901	Klhl24	1110046J11Rik|4930429H24Rik|6530402O20Rik|C85082	kelch-like 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-107217039-2	chr3	107216939	107217139	+	727.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111143, intron 4 of 8)	intron (NM_001111143, intron 4 of 8)	4693.0	NM_001111143	229697.0	Mm.297051	NM_001111143	ENSMUSG00000046213	Cym	Gm131	chymosin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-139021917-4	chr3	139021841	139022041	+	901.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356388, intron 2 of 13)	intron (NM_001356388, intron 2 of 13)	53260.0	NM_145544	229877.0	Mm.28893	NM_145544	ENSMUSG00000028149	Rap1gds1	BC011279|GDS1	RAP1, GTP-GDP dissociation stimulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-27598099-2	chr15	27597999	27598199	+	669.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26605.0	NR_106065	102466808.0		NR_106065	ENSMUSG00000098416	Mir7117	Gm27729|mmu-mir-7117	microRNA 7117	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3426779-4	chr12	3426688	3426888	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_030694)	promoter-TSS (NR_030694)	-41.0	NR_030694	100043040.0	Mm.415417	NR_030694	ENSMUSG00000071456	1110002L01Rik	-	RIKEN cDNA 1110002L01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-54758601-4	chr13	54758516	54758716	+	850.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_033610)	TTS (NM_033610)	7979.0	NM_001362407	104069.0	Mm.200843	NM_033610	ENSMUSG00000034891	Sncb	AI838531|betaSYN	synuclein, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-159495895-2	chr3	159495795	159495995	+	552.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001172092, intron 1 of 11)	intron (NM_001172092, intron 1 of 11)	462.0	NM_001172092	76131.0	Mm.371655	NM_029523	ENSMUSG00000028175	Depdc1a	5830484J08Rik|Depdc1	DEP domain containing 1a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-52615922-3	chr12	52615822	52616022	+	638.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13600.0	NR_045910	73278.0	Mm.396209	NR_045910	ENSMUSG00000100315	1700031P21Rik	-	RIKEN cDNA 1700031P21 gene	ncRNA	0.101493601260027	-0.0801794707938009	-0.418892779793412	-0.421619920121771	-0.170156336087343	-0.41453987804015	-0.418111253728556	-0.421144248052909	-1.7628544434875	0.497720180072309	1
Merged-chr9-70009062-4	chr9	70008961	70009161	+	891.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_016787, exon 11 of 11)	3' UTR (NM_016787, exon 11 of 11)	-3487.0	NM_001282084	235459.0	Mm.293117	NM_199151	ENSMUSG00000033543	Gtf2a2	TFIIA-gamma|TfIIg|Tfiia2	general transcription factor II A, 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-116202883-3	chr12	116202809	116203009	+	841.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60116.0	NM_146039	217935.0	Mm.31382	NM_146039	ENSMUSG00000042050	Wdr60	D430033N04Rik	WD repeat domain 60	protein-coding	3.19833244660143	3.09889077004336	1.43857614402182	1.39199540823968	3.81216690346189	3.12279108067093	3.56139012169987	2.12367710918157	1.23552469567774	0.159358124377063	0.618629888786455
Merged-chr17-56040312-4	chr17	56040222	56040422	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013733)	promoter-TSS (NM_013733)	-94.0	NM_013733	27221.0	Mm.391010	NM_013733	ENSMUSG00000002835	Chaf1a	AL023013|AL024058|CAF-1|Cac1p	chromatin assembly factor 1, subunit A (p150)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-57577747-2	chr16	57577647	57577847	+	701.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025599, intron 1 of 9)	intron (NM_025599, intron 1 of 9)	28505.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-36698311-4	chr5	36698192	36698392	+	699.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2271.0	NM_001081232	320661.0	Mm.26480	NM_177221	ENSMUSG00000029190	D5Ertd579e	9030221A05Rik|A930018H20Rik|Kiaa0232	DNA segment, Chr 5, ERATO Doi 579, expressed	protein-coding	1.8218111124592	3.0392599663287	1.79680444801093	2.2057678408819	1.98026261667078	3.06182510830548	1.81071427800094	2.08367745680454	0.0294452146427116	0.974090929186436	0.998431161219273
Merged-chr13-43725892-3	chr13	43725797	43725997	+	657.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9106.0	NR_046022	622552.0	Mm.375036	NR_046022	ENSMUSG00000110016	Gm20751	-	predicted gene, 20751	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-135461297-2	chr1	135461197	135461397	+	957.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_173437, intron 13 of 28)	intron (NM_173437, intron 13 of 28)	-6614.0	NR_049188	100885827.0		NR_049188	ENSMUSG00000093515	Mir1231	Gm23720|mir-1231|mmu-mir-1231	microRNA 1231	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-27941240-4	chr15	27941133	27941333	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081302, intron 1 of 56)	intron (NM_001081302, intron 1 of 56)	84615.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-100680226-1	chr12	100680126	100680326	+	589.0	f0_balb.idr	intron (NM_153587, intron 1 of 17)	RMER10B|LTR|ERVL	44894.0	NM_001330702	73086.0	Mm.220417	NM_153587	ENSMUSG00000021180	Rps6ka5	3110005L17Rik|6330404E13Rik|AI854034|MSK1|MSPK1|RLPK|RLSK|S6K-alpha-5	ribosomal protein S6 kinase, polypeptide 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-45799052-4	chr4	45798944	45799144	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028270)	promoter-TSS (NM_028270)	22.0	NM_028270	72535.0	Mm.331583	NM_028270	ENSMUSG00000035561	Aldh1b1	2700007F14Rik	aldehyde dehydrogenase 1 family, member B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-85085838-3	chr8	85085757	85085957	+	692.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010764, intron 4 of 23)	intron (NM_010764, intron 4 of 23)	2588.0	NM_010764	17159.0	Mm.4219	NM_010764	ENSMUSG00000005142	Man2b1	AW107687|LAMAN	mannosidase 2, alpha B1	protein-coding	0.806636780864373	0.918350911572238	1.18160065414954	2.98860505583993	1.47786043657698	1.88766883250108	0.891812375397545	2.95328340499319	0.37317400372226	0.856564740025783	0.998431161219273
Merged-chr15-34237531-1	chr15	34237431	34237631	+	622.0	f0_balb.idr	promoter-TSS (NM_033521)	promoter-TSS (NM_033521)	-495.0	NM_033521	114128.0	Mm.197518	NM_033521	ENSMUSG00000022257	Laptm4b	C330023P13Rik|LAPTM4beta	lysosomal-associated protein transmembrane 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-98918247-4	chr15	98918154	98918354	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029098)	promoter-TSS (NM_029098)	-156.0	NM_029098	74775.0	Mm.385020	NM_029098	ENSMUSG00000022999	Lmbr1l	1110013E13Rik|AA415653|D15Ertd735e|Limr	limb region 1 like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-120950786-2	chr4	120950669	120950869	+	943.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001005788, intron 1 of 5)	intron (NM_001005788, intron 1 of 5)	932.0	NM_001005788	381549.0	Mm.331840	NM_001005788	ENSMUSG00000064141	Zfp69	Gm1029|Krab2|Zfp63	zinc finger protein 69	protein-coding	0.278821762581098	-0.00393472109844206	-0.0110837823941017	-0.0166485605153198	0.409860824246219	-0.00233281272238228	-0.00950093478165615	1.10201230898402	2.73213374415415	0.211432115791272	1
Merged-chr1-136249915-3	chr1	136249810	136250010	+	827.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10963.0	NM_001101516	383563.0	Mm.40367	NM_001101516	ENSMUSG00000052759	Gpr25	Gm1300	G protein-coupled receptor 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-63240979-4	chr10	63240877	63241077	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER2|LTR|ERV1	-2820.0	NM_030114	67345.0	Mm.234437	NM_026101	ENSMUSG00000020064	Herc4	1700056O17Rik|4921531D01Rik|9530080M15Rik|mKIAA1593	hect domain and RLD 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-37958330-2	chr18	37958230	37958430	+	882.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_153793, exon 6 of 8)	exon (NM_153793, exon 6 of 8)	2771.0	NM_153793	225392.0	Mm.233516	NM_153793	ENSMUSG00000044024	Rell2	4631403P03Rik|ependolin	RELT-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-90030362-1	chr7	90030262	90030462	+	837.0	f0_balb.idr	intron (NR_110365, intron 1 of 5)	intron (NR_110365, intron 1 of 5)	1203.0	NR_110364	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-119821590-1	chr7	119821490	119821690	+	546.0	f1_balb.idr	intron (NM_001004187, intron 7 of 12)	Lx9|LINE|L1	27403.0	NM_001004187	434234.0	Mm.38237	NM_028129	ENSMUSG00000030924	Rexo5	2610020H08Rik	RNA exonuclease 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-110381155-2	chr9	110381055	110381255	+	625.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001103162, exon 17 of 23)	exon (NM_001103162, exon 17 of 23)	27055.0	NM_001081043	104831.0	Mm.335477	NM_001081043	ENSMUSG00000036057	Ptpn23	AI462446|PTP-TD14	protein tyrosine phosphatase, non-receptor type 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-43845873-4	chr5	43845807	43846007	+	673.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22902.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	1.83149586233309	2.03148484986928	2.3469829984148	2.05466443900369	2.58841588840816	2.32646944155896	2.12578099160158	2.06451613375212	0.556323241854168	0.51911650059319	0.947641799425091
Merged-chr13-97573769-4	chr13	97573663	97573863	+	937.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_046157, intron 2 of 2)	ORR1G|LTR|ERVL-MaLR	13763.0	NR_046157	328314.0	Mm.138047	NR_046157	ENSMUSG00000110235	Gm5086	B230311A21|EG328314	predicted gene 5086	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-67477939-2	chr18	67477839	67478039	+	569.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144867, intron 5 of 6)	intron (NM_144867, intron 5 of 6)	13090.0	NM_144867	225655.0	Mm.221420	NM_144867	ENSMUSG00000024530	Prelid3a	A230074A19Rik|BC019561|Slmo1	PRELI domain containing 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-35975877-1	chr5	35975777	35975977	+	548.0	f1_c57bl6.idr	intron (NM_027373, intron 10 of 16)	intron (NM_027373, intron 10 of 16)	82558.0	NM_027373	70292.0	Mm.125167	NM_027373	ENSMUSG00000029094	Afap1	2600003E23Rik|9630044L16Rik|AI848729|Afap|mKIAA3018	actin filament associated protein 1	protein-coding	0.654169019254984	0.136823193122233	0.564883531299298	0.127422370042644	0.379934364376557	0.138023225064883	0.574086818696781	0.128135751431027	-0.552172919104152	0.786515814099772	1
Merged-chr17-31680590-4	chr17	31680513	31680713	+	825.604187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001278570, intron 2 of 2)	intron (NM_001278570, intron 2 of 2)	2682.0	NM_001278570	12954.0	Mm.1228	NM_013501	ENSMUSG00000024041	Cryaa	Acry-1|Crya-1|Crya1|DAcry-1|lop18	crystallin, alpha A	protein-coding	4.35533576290375	3.9836206658326	3.32033132287225	4.00510154916064	3.83868756389209	3.35028866115297	4.25833123607622	4.42268461462005	0.0835238231481823	0.863375467636711	0.998431161219273
Merged-chr7-35234417-1	chr7	35234317	35234517	+	581.0	f0_balb.idr	Intergenic	Intergenic	-19072.0	NM_001024707	435965.0	Mm.333783	NM_001024707	ENSMUSG00000001802	Lrp3	-	low density lipoprotein receptor-related protein 3	protein-coding	3.33330725788461	3.3624688419479	3.537211185249	2.06844275449018	2.86361168347467	2.5924030987628	2.89814342354938	2.91265959038969	-0.644611797691503	0.344225091867501	0.845390144424048
Merged-chr2-84458743-4	chr2	84458666	84458866	+	844.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355271, intron 2 of 8)	Lx3B|LINE|L1	15408.0	NM_011576	21788.0	Mm.124316	NM_011576	ENSMUSG00000027082	Tfpi	A630013F22Rik|AW552122|EPI|LACI	tissue factor pathway inhibitor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52615229-4	chr13	52615137	52615337	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011518, intron 3 of 13)	intron (NM_011518, intron 3 of 13)	18355.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-51540063-3	chr3	51539929	51540129	+	774.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080793, intron 3 of 7)	intron (NM_080793, intron 3 of 7)	-19728.0	NR_033624	100039684.0	Mm.387178	NR_033624		5031434O11Rik	AI481280|Gm2370	RIKEN cDNA 5031434O11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-6890840-2	chr13	6890740	6890940	+	609.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	-242069.0	NM_001291071	56421.0	Mm.273874	NM_019703	ENSMUSG00000021196	Pfkp	1200015H23Rik|9330125N24Rik|ATP-PFK|PFK-C|PFK-P	phosphofructokinase, platelet	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-62977400-4	chr9	62977299	62977499	+	960.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019663, intron 1 of 13)	intron (NM_019663, intron 1 of 13)	3480.0	NM_019663	56469.0	Mm.431253	NM_019663	ENSMUSG00000032405	Pias1	2900068C24Rik|Ddxbp1|GBP	protein inhibitor of activated STAT 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-55702556-2	chr17	55702468	55702668	+	626.25	f0_balb.idr|f1_balb.idr	intron (NR_151542, intron 3 of 16)	intron (NR_151542, intron 3 of 16)	10068.0	NM_028370	72836.0	Mm.177073	NM_028370	ENSMUSG00000024174	Pot1b	2810458H16Rik	protection of telomeres 1B	protein-coding	1.04173513736987	1.18486624338385	3.65851721996651	1.9924954650171	2.15760297975368	2.89975558992808	2.49064749663511	1.40131253290885	-0.235717241872403	0.828830238085401	0.998431161219273
Merged-chr6-83685800-5	chr6	83685635	83685835	+	827.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7878.0	NM_144943	246278.0	Mm.136079	NM_144943	ENSMUSG00000034783	Cd207	-	CD207 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80104417-2	chr10	80104317	80104517	+	717.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 1 of 4)	intron (NR_038088, intron 1 of 4)	-1715.0	NM_001359637	216161.0	Mm.262102	NM_183426	ENSMUSG00000035673	Sbno2	BC019206|F730040C21|Sno|Stno	strawberry notch 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88454889-4	chr3	88454779	88454979	+	994.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163489, intron 1 of 14)	intron (NM_001163489, intron 1 of 14)	882.0	NM_013658	20351.0	Mm.439752	NM_013658	ENSMUSG00000028064	Sema4a	AI132332|SemB|Semab	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-121832699-2	chr2	121832599	121832799	+	913.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25642.0	NM_172673	228564.0	Mm.121514	NM_172673	ENSMUSG00000027238	Frmd5	1500032A09Rik|A930004K21Rik|R75430	FERM domain containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-55766944-4	chr1	55766845	55767045	+	999.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4|LINE|L1	-164296.0	NR_045837	329159.0	Mm.98697	NR_045837	ENSMUSG00000099950	9130227L01Rik	-	RIKEN cDNA 9130227L01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-53452597-2	chr3	53452497	53452697	+	631.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_172501, exon 7 of 7)	exon (NM_172501, exon 7 of 7)	10661.0	NM_172501	212114.0	Mm.85744	NM_172501	ENSMUSG00000042997	Nhlrc3	4833441N19|8030451K01Rik|mKIAA4083	NHL repeat containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-75300138-2	chr3	75300038	75300238	+	569.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	-30060.0	NM_026460	67931.0	Mm.259446	NM_026460	ENSMUSG00000034139	Serpini2	Spi14	serine (or cysteine) peptidase inhibitor, clade I, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-62342533-2	chr9	62342433	62342633	+	731.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_009672, intron 1 of 6)	CpG	1190.0	NM_009672	11737.0	Mm.269088	NM_009672	ENSMUSG00000032249	Anp32a	Anp32|I1PP2A|LANP|PHAP1|W91701|pp32	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-92985910-6	chr1	92985823	92986023	+	985.172241	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_022320, exon 2 of 2)	3' UTR (NM_022320, exon 2 of 2)	7020.0	NM_022320	64095.0	Mm.152780	NM_022320	ENSMUSG00000026271	Gpr35	KPG_007	G protein-coupled receptor 35	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-21422777-3	chr17	21422676	21422876	+	942.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011760)	promoter-TSS (NM_011760)	-451.0	NM_011760	22712.0	Mm.12916	NM_011760	ENSMUSG00000023882	Zfp54	2810034D10Rik|KRAB10|Zfp-54|Zfp76|mszf83	zinc finger protein 54	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-88631725-4	chr5	88631614	88631814	+	835.608337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359208, intron 9 of 13)	intron (NM_001359208, intron 9 of 13)	43866.0	NM_001098476	231413.0	Mm.332474	NM_178700	ENSMUSG00000044221	Grsf1	BB232551|C80280|D5Wsu31e	G-rich RNA sequence binding factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-71382124-4	chr2	71382021	71382221	+	991.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-7139.0	NM_026115	107435.0	Mm.272472	NM_026115	ENSMUSG00000027018	Hat1	2410071B14Rik|AA536933|Hat-1|KAT1	histone aminotransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-98504665-4	chr15	98504561	98504761	+	994.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	7187.0	NM_001001807	258502.0	Mm.377539	NM_001001807	ENSMUSG00000054036	Olfr279	MOR122-1|Olfr234|Olfr234-ps1|Olfr279-ps1	olfactory receptor 279	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-58742866-2	chr7	58742766	58742966	+	974.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_009728, intron 2 of 20)	MTEb|LTR|ERVL-MaLR	84664.0	NM_009728	11982.0	Mm.135129	NM_009728	ENSMUSG00000025324	Atp10a	Atp10c|pfatp	ATPase, class V, type 10A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44879944-2	chr9	44879844	44880044	+	989.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081049, intron 1 of 35)	intron (NM_001081049, intron 1 of 35)	1330.0	NM_001357549	214162.0	Mm.2389	NM_001081049	ENSMUSG00000002028	Kmt2a	6430520K01|ALL-1|All1|Cxxc7|HRX|HTRX1|Mll|Mll1|mKIAA4050	lysine (K)-specific methyltransferase 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-115740983-2	chr4	115740883	115741083	+	557.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172698, intron 2 of 11)	intron (NM_172698, intron 2 of 11)	2910.0	NM_172698	230648.0	Mm.283565	NM_172698	ENSMUSG00000034210	Efcab14	4732418C07Rik	EF-hand calcium binding domain 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-80107365-3	chr12	80107275	80107475	+	990.7333369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_007564)	TTS (NM_007564)	5638.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-54893998-4	chr14	54893893	54894093	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019402)	promoter-TSS (NM_019402)	-150.0	NM_019402	54196.0	Mm.7723	NM_019402	ENSMUSG00000022194	Pabpn1	PAB2|Pabp3|mPABII	poly(A) binding protein, nuclear 1	protein-coding	6.88398976460211	6.59885818101211	7.28699668745396	7.09870059935185	6.95068187750252	6.83395148388315	7.62721773890108	7.69863683175174	0.356856246964997	0.101274438477117	0.494878107323561
Merged-chr1-86218223-1	chr1	86218123	86218323	+	945.0	f0_balb.idr	intron (NM_027456, intron 19 of 20)	intron (NM_027456, intron 19 of 20)	63443.0	NM_001310702	78795.0	Mm.379264	NM_027456	ENSMUSG00000062590	Armc9	3830422A13Rik|4831423D23Rik|4930438O05Rik|5730415N24Rik	armadillo repeat containing 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-21571204-2	chr11	21571104	21571304	+	627.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001316675, intron 1 of 8)	intron (NM_001316675, intron 1 of 8)	730.0	NM_008618	17449.0	Mm.212703	NM_008618	ENSMUSG00000020321	Mdh1	B230377B03Rik|D17921|MDH-s|MDHA|Mor-2|Mor2	malate dehydrogenase 1, NAD (soluble)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101582256-4	chr11	101582164	101582364	+	979.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144830)	promoter-TSS (NM_144830)	22.0	NM_144830	217203.0	Mm.280559	NM_144830	ENSMUSG00000034947	Tmem106a	0610008L10Rik|AI043106|BC022145	transmembrane protein 106A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-43897950-3	chr5	43897844	43898044	+	617.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007646, intron 1 of 7)	RMER1B|Other|Other	29135.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-85325496-1	chr1	85325396	85325596	+	815.200012	f1_balb.idr	Intergenic	Intergenic	-54930.0	NM_001037909	620078.0	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik	RIKEN cDNA C130026I21 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140753378-2	chr5	140753278	140753478	+	827.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_173405)	TTS (NM_173405)	29251.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-24497006-1	chr9	24496906	24497106	+	543.0	f1_c57bl6.idr	intron (NM_001359948, intron 1 of 22)	intron (NM_001359948, intron 1 of 22)	6134.0	NM_001359948	244745.0	Mm.38526	NM_172920	ENSMUSG00000043067	Dpy19l1	1100001I19Rik|6030402K12|AI225861|AW558481	dpy-19-like 1 (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95626441-2	chr3	95626341	95626541	+	815.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001026212, intron 1 of 2)	B3|SINE|B2	1461.0	NM_001026212	56205.0	Mm.241365	NM_019561	ENSMUSG00000038619	Ensa	1700020C18Rik|2610007F17Rik|AI451924	endosulfine alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-34840849-2	chr12	34840749	34840949	+	836.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271386, intron 2 of 27)	intron (NM_001271386, intron 2 of 27)	76246.0	NM_001271386	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28395784-2	chr17	28395684	28395884	+	949.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-30568.0	NM_021478	22157.0	Mm.42102	NM_021478	ENSMUSG00000037446	Tulp1	Tulp1l	tubby like protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-69717060-4	chr8	69716974	69717174	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039965)	promoter-TSS (NM_001039965)	-172.0	NM_001039965	66869.0	Mm.334581	NM_181274	ENSMUSG00000054648	Zfp869	1200003I07Rik	zinc finger protein 869	protein-coding	7.24214399475272	7.67882264778321	7.80619715086309	7.30310467941554	7.47682472041867	7.61305276723316	7.57301215604456	7.53680444281843	0.028168571114877	0.860453490982025	0.998431161219273
Merged-chr17-23200102-1	chr17	23200002	23200202	+	551.0	f0_balb.idr	Intergenic	Intergenic	-6850.0	NM_001357697	22700.0	Mm.437934	NM_009555	ENSMUSG00000002617	Zfp40	CTfin12|NTfin12|Zfp-40	zinc finger protein 40	protein-coding	1.99904244726305	1.27130730970489	1.69791129965333	1.86170373870875	1.5771998017113	1.77295644887109	1.24519291777949	1.01178475361696	-1.01130474683639	0.386082783349357	0.876318810939384
Merged-chr4-33253314-4	chr4	33253209	33253409	+	821.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4522.0	NM_001033225	108767.0	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-46077045-4	chr4	46076947	46077147	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021883, intron 2 of 9)	intron (NM_021883, intron 2 of 9)	37825.0	NM_021883	21916.0	Mm.249594	NM_021883	ENSMUSG00000028328	Tmod1	E-Tmod|Tmod	tropomodulin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19227396-4	chr7	19227309	19227509	+	990.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207525)	promoter-TSS (NM_207525)	-980.0	NM_207525	403187.0	Mm.239583	NM_207525	ENSMUSG00000052214	Opa3	D630048P19Rik|Gm1425|Gm472	optic atrophy 3	protein-coding	2.89869312562273	3.76408425218425	3.58479825713157	2.76421503196922	3.15164155257379	1.63795633146248	2.61694004835354	2.66193095224349	-1.18806061745276	0.101432703686861	0.495198369601582
Merged-chr17-13212849-2	chr17	13212749	13212949	+	753.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	7807.0	NR_033458	100038394.0	Mm.401677	NR_033458		Gm10512	-	predicted gene 10512	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133493425-2	chr4	133493325	133493525	+	571.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081156, intron 1 of 1)	intron (NM_001081156, intron 1 of 1)	5125.0	NM_001081156	69539.0	Mm.151594	NM_001081156	ENSMUSG00000056596	Trnp1	2300002D11Rik|Trnp	TMF1-regulated nuclear protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-108690385-2	chr9	108690285	108690485	+	587.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1758.0	NM_008924	19087.0	Mm.253102	NM_008924	ENSMUSG00000032601	Prkar2a	1110061A24Rik|AI317181|AI836829|RII(alpha)	protein kinase, cAMP dependent regulatory, type II alpha	protein-coding	-0.643426114426009	-0.13603208644087	-0.63614878037246	-0.638886248565743	-0.642751148453361	-0.631796812660116	-0.635365850149794	-0.0959543066532267	0.158923990479681	0.956118735169945	1
Merged-chr19-45007244-2	chr19	45007147	45007347	+	883.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053164)	promoter-TSS (NM_053164)	689.0	NM_153796	226153.0	Mm.105585	NM_153796	ENSMUSG00000025209	Twnk	D19Ertd626e|PEO|Peo1|Twinl	twinkle mtDNA helicase	protein-coding	-1.0109647023573	-0.992339833358801	-1.00440344130496	-0.36443856586117	-0.860000135324876	-0.989725599192326	-1.00167250489271	-1.00692726115489	-1.9586543039366	0.532077442485856	1
Merged-chr1-190910462-4	chr1	190910367	190910567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178775, intron 1 of 14)	MIRb|SINE|MIR	1303.0	NM_178775	320119.0	Mm.220912	NM_178775	ENSMUSG00000089872	Rps6kc1	AA682037|B130003F20Rik|C80612|Rpk118	ribosomal protein S6 kinase polypeptide 1	protein-coding	4.9912931030704	4.4945762771671	5.34642818922071	5.04076856731016	4.84931469486313	5.353182027987	4.25603198870568	3.36379264602774	-0.444476819872756	0.300188073817048	0.801674545850335
Merged-chr1-153487716-4	chr1	153487605	153487805	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007842)	promoter-TSS (NM_007842)	-45.0	NM_007842	13211.0	Mm.20000	NM_007842	ENSMUSG00000042699	Dhx9	AI326842|Ddx9|HEL-5|NDHII|RHA|mHEL-5	DEAH (Asp-Glu-Ala-His) box polypeptide 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52632433-2	chr13	52632333	52632533	+	859.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011518, intron 8 of 13)	ID4_|SINE|ID	35551.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-50994311-2	chr17	50994228	50994428	+	705.5	f0_balb.idr|f0_c57.idr	intron (NM_028162, intron 3 of 21)	RLTR14-int|LTR|ERV1	165050.0	NM_001285993	72238.0	Mm.120650	NM_028162	ENSMUSG00000023923	Tbc1d5	1600014N05Rik	TBC1 domain family, member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-143311967-3	chr5	143311811	143312011	+	849.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172726, intron 2 of 5)	intron (NM_172726, intron 2 of 5)	3449.0	NM_172726	231868.0	Mm.440105	NM_172726	ENSMUSG00000039244	E130309D02Rik	A630028N22	RIKEN cDNA E130309D02 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-80326186-4	chr1	80326083	80326283	+	716.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016716, intron 1 of 15)	MIR|SINE|MIR	14507.0	NM_001313728	26554.0	Mm.12665	NM_016716	ENSMUSG00000004364	Cul3	KIAA0617	cullin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-145810888-3	chr2	145810773	145810973	+	869.611145	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028724, intron 2 of 12)	B3|SINE|B2	24757.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-69185185-2	chr12	69185085	69185285	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_146035, exon 1 of 1)	exon (NM_146035, exon 1 of 1)	1027.0	NM_146035	217664.0	Mm.206642	NM_146035	ENSMUSG00000043998	Mgat2	AA407964|CDGS2|GLCNACTII|GNT-II|GNT2	mannoside acetylglucosaminyltransferase 2	protein-coding	-1.26550836321643	-1.23538490674683	-1.24673049817958	-1.25605010478787	-1.26497736998827	-0.580802564315158	-1.24416210496749	-1.25438189966081	2.74054745292391	0.426663645876262	1
Merged-chr15-7264021-1	chr15	7263921	7264121	+	718.0	f0_balb.idr	intron (NM_001289496, intron 6 of 22)	intron (NM_001289496, intron 6 of 22)	123479.0	NM_013584	16880.0	Mm.149720	NM_013584	ENSMUSG00000054263	Lifr	A230075M04Rik|AW061234|LIF	leukemia inhibitory factor receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-13593498-2	chr1	13593437	13593637	+	837.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TC)n|Simple_repeat|Simple_repeat	-3627.0	NM_028173	72265.0	Mm.28765	NM_028173	ENSMUSG00000025935	Tram1	1810049E02Rik|TRAMP	translocating chain-associating membrane protein 1	protein-coding	-0.700673883082019	-0.508438517378279	-0.694673783932403	-0.409971187229201	-0.245951715675668	-0.691059278655754	-0.694024969377828	-0.696542563968751	0.127323229734276	0.963455762566763	1
Merged-chr9-111048080-2	chr9	111047980	111048180	+	747.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9164.0	NM_001302377	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-72768418-4	chr12	72768310	72768510	+	839.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008910, intron 1 of 5)	intron (NM_008910, intron 1 of 5)	7199.0	NM_008910	19042.0	Mm.261045	NM_008910	ENSMUSG00000021096	Ppm1a	2310003C21Rik|2900017D14Rik|AI427932|AU017636|MMPa-2|MPPa-1	protein phosphatase 1A, magnesium dependent, alpha isoform	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-28955638-2	chr18	28955538	28955738	+	551.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045398, intron 4 of 4)	MTE2a|LTR|ERVL-MaLR	83422.0	NR_155537	102637039.0	Mm.50107	NR_155537		Gm33948	-	predicted gene, 33948	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-9634322-4	chr4	9634228	9634428	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177856, intron 4 of 4)	intron (NM_001177856, intron 4 of 4)	9389.0	NM_001177853	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	4.87198047318659	5.62507533403643	5.29413698608103	4.81625681163868	5.05913344778232	5.00276807623589	4.66150125661119	5.30660173181204	-0.181049211475885	0.581630515147288	0.966599221005409
Merged-chr17-45748625-3	chr17	45748522	45748722	+	798.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152153, intron 1 of 4)	intron (NR_152153, intron 1 of 4)	14116.0	NR_152153	433111.0	Mm.213441	NR_152153	ENSMUSG00000097727	F630040K05Rik	-	RIKEN cDNA F630040K05 gene	ncRNA	3.00545610997661	1.89784295292949	3.17690049434673	3.00750627365986	2.9564066846719	1.91158665565909	2.82441723766231	3.50083615695014	0.110421632971999	0.884779392248633	0.998431161219273
Merged-chr11-121353834-2	chr11	121353734	121353934	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025793, intron 1 of 9)	CpG	613.0	NM_025793	66840.0	Mm.103986	NM_025793	ENSMUSG00000025173	Wdr45b	0610008N23Rik|AA408735|D16Bwg0193e|WIPI-3|Wdr45l	WD repeat domain 45B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105264019-2	chr8	105263919	105264119	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015821)	promoter-TSS (NM_015821)	575.0	NM_001033161	71609.0	Mm.264255	NM_001033161	ENSMUSG00000031887	Tradd	9130005N23Rik|AA930854	TNFRSF1A-associated via death domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-95858781-4	chr11	95858685	95858885	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045187)	promoter-TSS (NR_045187)	-32.0	NR_045187	73906.0	Mm.399894	NR_045187	ENSMUSG00000086015	4833417C18Rik	-	RIKEN cDNA 4833417C18 gene	ncRNA	7.8805614652288	7.73195778585315	7.82003018325909	7.97449616850317	7.79667825691063	7.43423528041058	7.64657912110004	7.50167013245256	-0.259522789002403	0.0642201131920606	0.378444458781111
Merged-chr9-63604446-3	chr9	63604345	63604545	+	853.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151671, intron 1 of 9)	intron (NR_151671, intron 1 of 9)	1799.0	NR_151671	66939.0	Mm.34338	NM_025857	ENSMUSG00000037257	Aagab	2310007F21Rik|p34	alpha- and gamma-adaptin binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-104101459-2	chr8	104101359	104101559	+	864.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009868)	promoter-TSS (NM_009868)	-166.0	NM_009868	12562.0	Mm.21767	NM_009868	ENSMUSG00000031871	Cdh5	7B4|AA408225|Cd144|VE-Cad|VECD|VEcad|Vec	cadherin 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-116123457-4	chr6	116123364	116123564	+	899.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177412, intron 3 of 5)	MERVL_2A-int|LTR|ERVL	69910.0	NM_177412	330401.0	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-152491355-5	chr4	152491317	152491517	+	662.799988	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355739, intron 3 of 29)	intron (NM_001355739, intron 3 of 29)	13275.0	NM_153424	260305.0	Mm.302496	NM_153424	ENSMUSG00000039577	Nphp4	4930564O18Rik|nmf192	nephronophthisis 4 (juvenile) homolog (human)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27750496-2	chr2	27750396	27750596	+	783.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290481, intron 5 of 9)	intron (NM_001290481, intron 5 of 9)	39913.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-55460160-3	chr11	55459945	55460145	+	575.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009720, intron 1 of 3)	intron (NM_009720, intron 1 of 3)	1163.0	NM_009720	11927.0	Mm.217759	NM_009720	ENSMUSG00000018585	Atox1	AI256639|Atx1	antioxidant 1 copper chaperone	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-45537727-2	chr19	45537627	45537827	+	915.4166869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22837.0	NM_001330506	56626.0	Mm.46509	NM_020032	ENSMUSG00000025218	Poll	1110003P06Rik|AV007317	polymerase (DNA directed), lambda	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-152895144-4	chr3	152895031	152895231	+	938.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012028, intron 2 of 4)	intron (NM_012028, intron 2 of 4)	87076.0	NM_012028	26938.0	Mm.40915	NM_012028	ENSMUSG00000039037	St6galnac5	AI851940|Siat7e	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-43096488-1	chr9	43096388	43096588	+	582.0	f0_balb.idr	intron (NM_001359232, intron 1 of 40)	intron (NM_001359232, intron 1 of 40)	9230.0	NM_001359232	69632.0	Mm.275266	NM_027144	ENSMUSG00000059495	Arhgef12	2310014B11Rik|AU019857|Larg|mKIAA0382	Rho guanine nucleotide exchange factor (GEF) 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-144897915-2	chr3	144897815	144898015	+	650.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1904.0	NR_126537	622139.0	Mm.447150	NM_001039222	ENSMUSG00000074196	Clca4c-ps	Clca4c|EG622139|Gm18718|Gm6289	chloride channel accessory 4C, pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-13215092-4	chr12	13214965	13215165	+	847.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34109.0	NM_134040	104721.0	Mm.251255	NM_134040	ENSMUSG00000037149	Ddx1	AA409185|DBP-RB	DEAD (Asp-Glu-Ala-Asp) box polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-105762956-4	chr7	105762859	105763059	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001162943, exon 10 of 21)	exon (NM_001162943, exon 10 of 21)	-10724.0	NM_009906	12751.0	Mm.20837	NM_009906	ENSMUSG00000030894	Tpp1	Cln2|LPIC|TPP-1|TPP-I	tripeptidyl peptidase I	protein-coding	4.73371175190088	4.80787282950411	4.66127016977691	5.13516147472262	4.21973906450596	3.79494233567957	3.5606811903042	4.84120172682471	-0.807596814707002	0.0486248975105753	0.320902926475183
Merged-chr13-99329892-1	chr13	99329792	99329992	+	689.0	f1_c57bl6.idr	intron (NM_026873, intron 7 of 9)	intron (NM_026873, intron 7 of 9)	14786.0	NM_026873	68927.0	Mm.276502	NM_026873	ENSMUSG00000021650	Ptcd2	1190005P08Rik	pentatricopeptide repeat domain 2	protein-coding	2.45748891425466	2.55175424805924	3.58767334515807	1.50763317822374	2.13814629877276	1.63103527756968	3.40325047603496	1.2316903193179	-0.623502867222203	0.527278525060121	0.948839578239191
Merged-chr14-44068062-2	chr14	44067962	44068162	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34592.0	NM_007895	13587.0	Mm.327386	NM_007895	ENSMUSG00000072596	Ear2	EAR-13|EAR-2|ECP|ECP 2|Raf3|Rnase2	eosinophil-associated, ribonuclease A family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-67226313-4	chr7	67226171	67226371	+	790.016663	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175215, exon 3 of 3)	exon (NM_175215, exon 3 of 3)	3655.0	NM_001191051	75099.0	Mm.121691	NM_175215	ENSMUSG00000043831	Lysmd4	4930506D23Rik	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-36952376-4	chr14	36952312	36952512	+	832.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027045, intron 1 of 10)	intron (NM_027045, intron 1 of 10)	-11148.0	NM_001347502	72972.0	Mm.27621	NM_027045	ENSMUSG00000058690	Ccser2	1700012P13Rik|2900054P12Rik|AI035535|AW108503|Fam190b|Gcap14	coiled-coil serine rich 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95015609-4	chr3	95015513	95015713	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030074)	promoter-TSS (NM_030074)	-156.0	NM_001357863	78266.0	Mm.389478	NM_030074	ENSMUSG00000019338	Zfp687	4931408L03Rik|Znf687|mKIAA1441	zinc finger protein 687	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-128381217-4	chr7	128381121	128381321	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026418, intron 4 of 4)	intron (NM_026418, intron 4 of 4)	36951.0	NM_026418	67865.0	Mm.18635	NM_026418	ENSMUSG00000030844	Rgs10	2310010N19Rik	regulator of G-protein signalling 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-5528208-2	chr11	5528108	5528308	+	702.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_134033)	TTS (NM_134033)	7567.0	NM_001271730	22433.0	Mm.469937	NM_013842	ENSMUSG00000020484	Xbp1	D11Ertd39e|TREB-5|TREB5|XBP-1	X-box binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191314104-3	chr1	191314002	191314202	+	837.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025424, intron 1 of 3)	intron (NM_025424, intron 1 of 3)	4016.0	NM_025424	66208.0	Mm.46444	NM_025424	ENSMUSG00000037499	Nenf	1110060M21Rik|SCIRP10|Spuf	neuron derived neurotrophic factor	protein-coding	1.75013325250901	1.08334699453663	1.06196789487147	1.95564607887299	1.52870671238313	2.3089655124231	2.03342802116377	1.60528380254661	1.10587944272089	0.337360155166816	0.837097850894413
Merged-chr10-81547302-2	chr10	81547202	81547402	+	758.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-2256.0	NM_010301	14672.0	Mm.260925	NM_010301	ENSMUSG00000034781	Gna11	Dsk7|E430025L19	guanine nucleotide binding protein, alpha 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-173000977-4	chr2	173000872	173001072	+	857.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175112, intron 1 of 11)	intron (NM_175112, intron 1 of 11)	855.0	NM_175112	66679.0	Mm.4113	NM_175112	ENSMUSG00000027509	Rae1	3230401I12Rik|D2Ertd342e|MNRP|MNRP41	ribonucleic acid export 1	protein-coding	3.0587027012863	3.86022537863458	3.64292261239823	4.60572107547538	3.92654832496671	4.64016749343726	4.45302174057295	4.37457951713748	0.612875338463692	0.202508490626795	0.688808411556785
Merged-chr7-127387222-4	chr7	127387120	127387320	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030226)	promoter-TSS (NM_030226)	-54.0	NM_030226	78921.0	Mm.200950	NM_030226	ENSMUSG00000030823	9130019O22Rik	-	RIKEN cDNA 9130019O22 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-90231610-4	chr3	90231504	90231704	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_206924)	promoter-TSS (NM_206924)	7.0	NM_206924	23922.0	Mm.13912	NM_206924	ENSMUSG00000027937	Jtb	Gm622	jumping translocation breakpoint	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-119996096-4	chr2	119995984	119996184	+	951.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355293, intron 1 of 30)	intron (NM_001355293, intron 1 of 30)	-21433.0	NR_106125	102466842.0		NR_106125	ENSMUSG00000098632	Mir7665	Gm27478|mmu-mir-7665	microRNA 7665	ncRNA	1.68025758139594	1.77068479398546	1.25917541264098	1.87111473432779	1.4764154176412	1.07065342646753	1.59275542297958	1.88117887490639	-0.410979276259187	0.718458354366132	0.998431161219273
Merged-chr8-121589694-2	chr8	121589594	121589794	+	695.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026160)	promoter-TSS (NM_026160)	-774.0	NM_026160	67443.0	Mm.28357	NM_026160	ENSMUSG00000031812	Map1lc3b	1010001C15Rik|Atg8|LC3b|Map1lc3	microtubule-associated protein 1 light chain 3 beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-22127430-2	chr9	22127330	22127530	+	849.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001102404, intron 4 of 4)	ID2|SINE|ID	3168.0	NM_007388	11433.0	Mm.46354	NM_007388	ENSMUSG00000001348	Acp5	TRACP|TRAP	acid phosphatase 5, tartrate resistant	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-138038620-4	chr4	138038509	138038709	+	857.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355699, intron 1 of 32)	intron (NM_001355699, intron 1 of 32)	40784.0	NM_001355700	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	1.99575410922577	2.25912461337944	1.05463802396615	1.70878420237394	1.63356880322559	1.07916215504496	1.63577716651727	1.71782798141101	-0.893714884474092	0.443207562820463	0.911848228504708
Merged-chr18-80478232-4	chr18	80478135	80478335	+	962.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR26D_MM|LTR|ERVK	-8568.0	NM_026295	67655.0	Mm.312893	NM_026295	ENSMUSG00000033323	Ctdp1	4930563P03Rik|AW553592	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-21047627-2	chr11	21047527	21047727	+	665.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43697.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-160093351-4	chr2	160093230	160093430	+	949.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	76677.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-105815481-4	chr3	105815397	105815597	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045845)	promoter-TSS (NR_045845)	-70.0	NR_045845	433637.0	Mm.331285	NR_045845	ENSMUSG00000104835	Gm5547	EG433637	predicted gene 5547	ncRNA	1.5247752037867	2.07537103597625	3.00164113220501	1.14525060264501	1.84815709894212	2.09194280035132	1.45124435289943	2.80534517373003	-0.0019352042873584	0.998529209011066	0.999479715059607
Merged-chr5-74710254-1	chr5	74710154	74710354	+	602.0	f0_balb.idr	Intergenic	Intergenic	-7351.0	NM_001159577	16924.0	Mm.440403	NM_010727	ENSMUSG00000029228	Lnx1	Lnx	ligand of numb-protein X 1	protein-coding	1.76126445847881	1.03117513661768	1.81475902731578	0.999049965287875	1.94463916782332	1.27265075528103	1.7107438388368	1.87271596722357	0.827692727512973	0.497537518271559	0.936897994490085
Merged-chr15-4816978-4	chr15	4816876	4817076	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-81761.0	NM_001166066	223825.0	Mm.159281	NM_001166066	ENSMUSG00000022155	Mroh2b	4930455B06Rik|Heatr7b2|SPIF	maestro heat-like repeat family member 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83005700-3	chr6	83005568	83005768	+	845.805542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_033079, exon 6 of 10)	exon (NM_033079, exon 6 of 10)	27803.0	NM_010070	13448.0	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	-0.948023810556697	-0.931328820230236	-0.941483360464557	-0.943939722492461	-0.792167248103246	-0.928545634159077	-0.227406778159396	-0.943510391816416	3.1012295273374	0.301013727230549	1
Merged-chr11-82010789-2	chr11	82010681	82010881	+	618.25	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-24796.0	NM_011333	20296.0	Mm.290320	NM_011333	ENSMUSG00000035385	Ccl2	AI323594|HC11|JE|MCAF|MCP-1|MCP1|SMC-CF|Scya2|Sigje	chemokine (C-C motif) ligand 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-117996834-2	chr3	117996734	117996934	+	731.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-127898.0	NM_029655	76561.0	Mm.33824	NM_029655	ENSMUSG00000028007	Snx7	2510028H01Rik	sorting nexin 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129783866-2	chr4	129783766	129783966	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID2|SINE|ID	-36613.0	NM_008974	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	-1.50811478453619	-0.99851579554048	-1.48484165847197	-1.49312904261012	-1.50577282675516	-1.47256636097272	-1.48255773576353	-1.49164560481169	-2.24133836997777	0.518237887813808	1
Merged-chr10-17528482-3	chr10	17528389	17528589	+	676.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-194739.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-98204316-2	chr4	98204216	98204416	+	924.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	178949.0	NM_053157	94043.0	Mm.331719	NM_053157	ENSMUSG00000028563	Tm2d1	2310026L18Rik|AA990549|Bbp	TM2 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76700178-2	chr15	76700078	76700278	+	733.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_182805)	TTS (NM_182805)	-1364.0	NM_027122	69572.0	Mm.34920	NM_027122	ENSMUSG00000019080	Mfsd3	2310010G13Rik	major facilitator superfamily domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-84072068-4	chr17	84071964	84072164	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6596.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-39791699-2	chr3	39791599	39791799	+	658.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3B|LINE|L1	731213.0	NR_040445	100040882.0	Mm.272869	NR_040445	ENSMUSG00000037884	1700017G19Rik	-	RIKEN cDNA 1700017G19 gene	ncRNA	-2.05752322593321	-2.15521190974092	-2.16307242109104	-2.16952927915413	-2.17938029103484	-2.15350850414045	-2.16129297361887	-2.16837350464794	-0.683654500252594	0.846597994014493	1
Merged-chr13-107124487-2	chr13	107124387	107124587	+	737.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	101917.0	NR_015471	100040322.0	Mm.133867	NR_015471	ENSMUSG00000071181	3830408C21Rik	-	RIKEN cDNA 3830408C21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-127359652-2	chr2	127359552	127359752	+	613.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3634.0	NM_009633	11552.0	Mm.347390	NM_009633	ENSMUSG00000058620	Adra2b	Adra-2b|[a]2B|a2b-AR|alpha2-C2|alpha2B	adrenergic receptor, alpha 2b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-61529526-4	chr11	61529390	61529590	+	918.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252188, intron 7 of 10)	intron (NM_001252188, intron 7 of 10)	24346.0	NM_001330781	27078.0	Mm.261226	NM_013717	ENSMUSG00000001039	B9d1	AW045994|B9|Eppb9	B9 protein domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55778942-2	chr14	55778842	55779042	+	549.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001361604, exon 8 of 26)	exon (NM_001361604, exon 8 of 26)	5130.0	NM_080435	104110.0	Mm.287010	NM_080435	ENSMUSG00000022220	Adcy4	mKIAA4004	adenylate cyclase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-116007424-4	chr3	116007339	116007539	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023214)	promoter-TSS (NM_023214)	-10.0	NM_021388	58193.0	Mm.41739	NM_021388	ENSMUSG00000027963	Extl2	3000001D04Rik|AW146439	exostoses (multiple)-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67186937-2	chr10	67186837	67187037	+	806.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001242396, intron 1 of 24)	intron (NM_001242396, intron 1 of 24)	1187.0	NM_001242396	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-192190686-2	chr1	192190559	192190759	+	613.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010600)	promoter-TSS (NM_010600)	-118.0	NM_001038607	16510.0	Mm.4489	NM_010600	ENSMUSG00000058248	Kcnh1	EAG1|Kv10.1|M-eag	potassium voltage-gated channel, subfamily H (eag-related), member 1	protein-coding	1.73339772649966	2.1737934045499	3.92853780001832	2.16855130287122	1.33747410465567	2.00820201085246	1.1683588995212	2.73561078881473	-1.64753085558966	0.0969543728641774	0.483839492856643
Merged-chr17-47293247-2	chr17	47293147	47293347	+	544.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001097623, intron 5 of 19)	RSINE1|SINE|B4	63017.0	NM_172622	224829.0	Mm.260989	NM_172622		Trerf1	9430096I18Rik|AI429294|B830015H24|RAPA|Trep-132|Trep132	transcriptional regulating factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-87907463-4	chr3	87907430	87907630	+	806.8690190000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001331051, intron 1 of 6)	intron (NM_001331051, intron 1 of 6)	680.0	NM_001331052	15191.0	Mm.292208	NM_008231	ENSMUSG00000004897	Hdgf	AI118077|D3Ertd299e	hepatoma-derived growth factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-70219263-2	chr9	70219163	70219363	+	728.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_181072, intron 1 of 27)	MTD|LTR|ERVL-MaLR	11913.0	NM_181072	71602.0	Mm.249311	NM_181072	ENSMUSG00000032220	Myo1e	2310020N23Rik|9130023P14Rik|AA407778|myosin-1e|myr 3	myosin IE	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-121658481-4	chr11	121658362	121658562	+	821.795837	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178664, intron 3 of 12)	intron (NM_178664, intron 3 of 12)	14689.0	NM_178664	210004.0	Mm.386847	NM_178664	ENSMUSG00000046605	B3gntl1	6030413G23Rik	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-103361535-4	chr15	103361423	103361623	+	993.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001314041, intron 1 of 30)	intron (NM_001314041, intron 1 of 30)	5268.0	NM_010577	16402.0	Mm.16234	NM_010577	ENSMUSG00000000555	Itga5	Cd49e|Fnra|VLA5	integrin alpha 5 (fibronectin receptor alpha)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-12165843-2	chr17	12165743	12165943	+	603.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026644, intron 2 of 8)	intron (NM_026644, intron 2 of 8)	46559.0	NM_026644	68262.0	Mm.258300	NM_026644	ENSMUSG00000023827	Agpat4	1500003P24Rik	1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-106039781-4	chr8	106039685	106039885	+	994.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301176, intron 6 of 14)	intron (NM_001301176, intron 6 of 14)	-19818.0	NM_010901	18021.0	Mm.383185	NM_010901	ENSMUSG00000031902	Nfatc3	C80703|D8Ertd281e|NFAT4|NFATx	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-25296762-4	chr10	25296654	25296854	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018747, intron 1 of 7)	CpG	2409.0	NM_018747	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85474460-3	chr12	85474346	85474546	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010234, intron 1 of 3)	CpG	556.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-13787656-3	chr18	13787563	13787763	+	896.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360804, intron 5 of 7)	intron (NM_001360804, intron 5 of 7)	185070.0	NM_001360804	225207.0	Mm.40325	NM_145492	ENSMUSG00000024420	Zfp521	B930086A16Rik|Evi3|Znf521	zinc finger protein 521	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-34598694-2	chr19	34598594	34598794	+	621.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001101605, intron 1 of 1)	intron (NM_001101605, intron 1 of 1)	733.0	NM_001110517	667373.0	Mm.371956	NM_001101605	ENSMUSG00000079339	Ifit1bl1	Gm14446|Ifit1c	interferon induced protein with tetratricpeptide repeats 1B like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-143585759-2	chr3	143585659	143585859	+	560.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	126384.0	NR_040405	621809.0	Mm.360134	NR_040405	ENSMUSG00000105279	Gm6260	EG621809	predicted gene 6260	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-110479249-4	chr11	110479154	110479354	+	722.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356346)	promoter-TSS (NM_001356346)	-86.0	NM_001356346	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	2.52971323772076	2.3590360546984	2.63772883900752	2.8268740373696	2.13354199848006	2.21924749516978	2.55093099184713	2.57903488100495	-0.476110442463312	0.533834572917655	0.952266905421651
Merged-chr15-55393359-2	chr15	55393259	55393459	+	683.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_181277, intron 14 of 47)	intron (NM_181277, intron 14 of 47)	85609.0	NM_181277	12818.0	Mm.297859	NM_181277	ENSMUSG00000022371	Col14a1	5730412L22Rik|AW108078	collagen, type XIV, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-61556217-6	chr18	61556292	61556492	+	896.638916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357498, intron 1 of 10)	intron (NM_001357498, intron 1 of 10)	1119.0	NM_146087	93687.0	Mm.26908	NM_146087	ENSMUSG00000024576	Csnk1a1	2610208K14Rik|4632404G05Rik|5430427P18Rik|CK1a|Csnk1a	casein kinase 1, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-38020377-4	chr19	38020285	38020485	+	909.908325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302140, intron 3 of 53)	intron (NM_001302140, intron 3 of 53)	23192.0	NM_001099634	226101.0	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding	4.32424737248097	4.14226263250308	4.00620138319633	4.02628489469711	4.68439438509714	4.48596834709439	4.68508697070345	3.76810352165982	0.42208323353499	0.310958697519927	0.812040423094022
Merged-chr4-155559683-4	chr4	155559563	155559763	+	998.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001160017)	TTS (NM_001160017)	-2718.0	NM_138671	192185.0	Mm.28347	NM_138671	ENSMUSG00000029063	Nadk	4432404C02Rik|BC004012	NAD kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-121908571-2	chr8	121908434	121908634	+	765.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011404)	promoter-TSS (NM_011404)	701.0	NM_001033485	407789.0	Mm.436576	NM_001033485		BC048644	-	cDNA sequence BC048644	protein-coding	1.36305034711648	0.992910168710906	1.47448360285697	1.92029045988217	1.48642642837747	0.995624435100479	2.16415661348511	0.973219865566154	0.197035696706171	0.884793375058888	0.998431161219273
Merged-chr7-80027124-4	chr7	80027097	80027297	+	990.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175433, intron 1 of 4)	CpG	969.0	NM_175433	209225.0	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-123364448-3	chr7	123364459	123364659	+	692.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316713, intron 1 of 19)	intron (NM_001316713, intron 1 of 19)	5356.0	NM_001122643	70497.0	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-119087774-3	chr1	119087711	119087911	+	623.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34192.0	NM_001081125	14633.0	Mm.273292	NM_001081125	ENSMUSG00000048402	Gli2	-	GLI-Kruppel family member GLI2	protein-coding	-0.228739994800872	-0.215856610661161	-0.220091807110017	-0.223349794819734	-0.0883795518921241	0.266692250726193	-0.0461031212196307	0.2946357780677	3.69813100752041	0.0962497896361562	1
Merged-chr7-105818721-2	chr7	105818621	105818821	+	816.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7634.0	NM_025301	27397.0	Mm.44225	NM_025301	ENSMUSG00000030879	Mrpl17	MRP-L26|Rpml26	mitochondrial ribosomal protein L17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-97337108-4	chr1	97337028	97337228	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16_Mm|LTR|ERVK	-208825.0	NM_028942	74441.0	Mm.60362	NM_028942	ENSMUSG00000026331	Slco6c1	4933404A18Rik|C79179	solute carrier organic anion transporter family, member 6c1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-76711497-2	chr2	76711397	76711597	+	655.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_011652, exon 307 of 313)	exon (NM_011652, exon 307 of 313)	36182.0	NM_031256	83435.0	Mm.41636	NM_031256	ENSMUSG00000002733	Plekha3	FAPP1	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-23675316-4	chr5	23675252	23675452	+	809.854187	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359174, intron 2 of 16)	CpG	615.0	NM_001359174	20817.0	Mm.288728	NM_009274	ENSMUSG00000062604	Srpk2	AW226533|AW492537|AW547358|Wbp6|mSRPK2	serine/arginine-rich protein specific kinase 2	protein-coding	1.04962352800018	1.3451872774908	1.28722745122864	1.69641328694699	0.604377919898338	0.643179349076272	0.844177351417356	0.620034908433139	-4.01749726237796	0.0112133162639423	0.117946261135108
Merged-chr15-96465219-2	chr15	96465119	96465319	+	563.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4376.0	NM_028148	72193.0	Mm.324474	NM_028148	ENSMUSG00000033228	Scaf11	1110061H03Rik|2610510E10Rik|AI462454|CASP11|SIP1|SRRP129|Sfrs2ip|Srsf2ip|mKIAA3013	SR-related CTD-associated factor 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120612815-4	chr11	120612741	120612941	+	812.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347615, intron 6 of 12)	intron (NM_001347615, intron 6 of 12)	4364.0	NM_001347616	208990.0	Mm.29444	NM_153288	ENSMUSG00000044034	Npb	PPL7|mPPL7	neuropeptide B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-5289520-3	chr10	5289439	5289639	+	935.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001347732, exon 55 of 146)	exon (NM_001347732, exon 55 of 146)	-94832.0	NM_001079686	64009.0	Mm.331626	NM_022027	ENSMUSG00000096054	Syne1	8B|A330049M09Rik|BE692247|C130039F11Rik|CPG2|KASH1|Myne1|mKIAA1756|myne-1	spectrin repeat containing, nuclear envelope 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-102694255-5	chr13	102694151	102694351	+	921.8800050000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360519, intron 1 of 2)	intron (NM_001360519, intron 1 of 2)	693.0	NM_008533	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-31082559-3	chr17	31082534	31082734	+	891.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009593, intron 2 of 14)	MTD|LTR|ERVL-MaLR	24940.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-69089359-4	chr14	69089249	69089449	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60060.0	NM_009285	20855.0	Mm.20911	NM_009285	ENSMUSG00000014813	Stc1	Stc	stanniocalcin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-32347876-2	chr18	32347776	32347976	+	557.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15-int|LTR|ERVL	-29341.0	NM_001083334	30948.0	Mm.4383	NM_009668	ENSMUSG00000024381	Bin1	ALP-1|Amphl|BRAMP-2|SH3P9	bridging integrator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-101851019-3	chr13	101850922	101851122	+	674.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-82805.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69350991-2	chr11	69350891	69351091	+	759.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146019, intron 27 of 39)	intron (NM_146019, intron 27 of 39)	10222.0	NR_027827	80515.0	Mm.5324	NM_020591	ENSMUSG00000043419	Chd3os	2310043C11Rik|A030009H04Rik|AA589459|AB041807|MNCb-2875|RNF21	chromodomain helicase DNA binding protein 3, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5782327-2	chr19	5782227	5782427	+	841.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10908.0	NR_155264	78891.0	Mm.276063	NM_023912	ENSMUSG00000024941	Scyl1	2810011O19Rik|C85140|Ntkl|mdf|mfd|p105	SCY1-like 1 (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78119910-4	chr15	78119799	78119999	+	903.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007583)	promoter-TSS (NM_007583)	-619.0	NM_007583	12300.0	Mm.277338	NM_007583	ENSMUSG00000019146	Cacng2	AW060990|B230105C07Rik|B930041E13Rik|stargazer|stargazin|stg|wag|waggler	calcium channel, voltage-dependent, gamma subunit 2	protein-coding	0.783180723203652	0.65663736162335	0.646171845368979	1.32186362740117	1.04788811850709	1.44432363584561	1.27456516861089	0.822448208933961	1.28318810412592	0.385701637336798	0.876227261695323
Merged-chr17-24480666-3	chr17	24480488	24480688	+	773.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1510.0	NM_019988	56716.0	Mm.289516	NM_019988	ENSMUSG00000024142	Mlst8	0610033N12Rik|AA409454|AI505104|AI851821|Gbl	MTOR associated protein, LST8 homolog (S. cerevisiae)	protein-coding	0.708076066240767	0.842002966127377	0.354416671842009	0.349299758972128	0.981297312368808	0.554545752181354	0.532126775489651	0.512862078283016	0.488682209143353	0.773126385984036	1
Merged-chr2-30636606-6	chr2	30636568	30636768	+	788.555542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41343.0	NR_136917	665635.0	Mm.450149	NR_136917		Gm14486	-	predicted gene 14486	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-135612972-4	chr3	135612866	135613066	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008689, intron 11 of 24)	intron (NM_008689, intron 11 of 24)	78581.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	3.40227831559608	2.38788223332433	2.4685768773208	2.96363479446389	2.92122497959015	3.17262605246313	2.97481800719069	2.78382160833679	0.141932793489966	0.834353135232661	0.998431161219273
Merged-chr19-4120651-2	chr19	4120551	4120751	+	847.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016666, intron 2 of 6)	intron (NM_016666, intron 2 of 6)	924.0	NM_001276284	11632.0	Mm.10433	NM_016666	ENSMUSG00000024847	Aip	AA408703|AW476050|Ara9|D19Bwg1412e|Fkbp16|Xap2	aryl-hydrocarbon receptor-interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-105850278-3	chr3	105850192	105850392	+	945.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20566.0	NM_027025	69296.0	Mm.235024	NM_027025	ENSMUSG00000000562	Tmigd3	1700001d09rik|4930578J19Rik|Tg(H2-K-CALR*)del52Shmd	transmembrane and immunoglobulin domain containing 3	protein-coding	3.39845081890226	3.28327232111281	2.10393058036756	3.57382446599115	2.9472728251064	2.40423178961622	2.12158432644905	3.70100758459019	-0.418712741986817	0.568488792823642	0.962718661854691
Merged-chr2-27266093-4	chr2	27266038	27266238	+	992.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_133905, intron 29 of 29)	L1MEg|LINE|L1	-18835.0	NM_138665	192166.0	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-94630523-2	chr11	94630423	94630623	+	571.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133807, intron 1 of 6)	intron (NM_133807, intron 1 of 6)	699.0	NM_133807	98238.0	Mm.172720	NM_133807	ENSMUSG00000020869	Lrrc59	AA959742|C78668	leucine rich repeat containing 59	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35809654-4	chr17	35809571	35809771	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12042.0	NM_133662	15937.0	Mm.25613	NM_133662	ENSMUSG00000003541	Ier3	AI663993|IEX-1|cI-3|gly96	immediate early response 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-54646008-1	chr14	54645908	54646108	+	588.0	f1_balb.idr	intron (NM_019567, intron 6 of 12)	intron (NM_019567, intron 6 of 12)	-2898.0	NR_105913	102466771.0		NR_105913	ENSMUSG00000106169	Mir6948	mmu-mir-6948	microRNA 6948	ncRNA	-1.04446994549586	-1.02430150555533	-0.85571191593018	-1.04088093696898	-1.04393624043168	-1.02172839526125	-0.444248496842517	-1.04050309324358	1.85096186283575	0.558013953607104	1
Merged-chr2-24347814-3	chr2	24347769	24347969	+	824.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039701, intron 2 of 3)	intron (NM_001039701, intron 2 of 3)	2498.0	NM_001039701	16181.0	Mm.882	NM_031167	ENSMUSG00000026981	Il1rn	F630041P17Rik|IL-1ra	interleukin 1 receptor antagonist	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-48772453-2	chr11	48772353	48772553	+	940.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27907.0	NM_008143	14694.0	Mm.5305	NM_008143	ENSMUSG00000020372	Rack1	AL033335|GB-like|Gnb2-rs1|Gnb2l1|p205	receptor for activated C kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-27229858-2	chr7	27229758	27229958	+	630.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1261.0	NM_181593	233011.0	Mm.30963	NM_181593	ENSMUSG00000003752	Itpkc	9130023N17Rik	inositol 1,4,5-trisphosphate 3-kinase C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-110733487-4	chr10	110733402	110733602	+	962.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11937.0	NM_001358560	52679.0	Mm.11747	NM_178609	ENSMUSG00000020185	E2f7	A630014C11Rik|D10Ertd739e|E2F-7	E2F transcription factor 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100191037-4	chr7	100190924	100191124	+	885.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12341.0	NM_001190871	57442.0	Mm.282386	NM_020574	ENSMUSG00000035165	Kcne3	2210017H05Rik|MiRP2	potassium voltage-gated channel, Isk-related subfamily, gene 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-45613206-4	chr17	45613129	45613329	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11127.0	NM_001177469	653016.0	Mm.45676	NM_001177468	ENSMUSG00000079471	Mymx	EG653016|Esgp|Gm7325|minion|myomerger	myomixer, myoblast fusion factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-156439873-1	chr2	156439773	156439973	+	642.0	f0_c57.idr	intron (NM_001291120, intron 2 of 22)	intron (NM_001291120, intron 2 of 22)	18964.0	NM_001291123	13821.0	Mm.20852	NM_013510	ENSMUSG00000027624	Epb41l1	4.1N|Epb4.1l1|NBL1|mKIAA0338	erythrocyte membrane protein band 4.1 like 1	protein-coding	-0.538986627015133	-0.347891818301543	-0.532419078462448	-0.381674291373552	-0.00449433795992227	-0.528461049117185	-0.531708699958905	-0.379096846921155	1.33496585740382	0.595322555039256	1
Merged-chr15-9128669-3	chr15	9128588	9128788	+	706.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013787, intron 2 of 9)	intron (NM_013787, intron 2 of 9)	11766.0	NM_013787	27401.0	Mm.35584	NM_013787	ENSMUSG00000054115	Skp2	4930500A04Rik|FBXL1|FWD1|p45	S-phase kinase-associated protein 2 (p45)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-89468773-2	chr15	89468673	89468873	+	666.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7479.0	NR_077233	100532730.0	Mm.461541	NR_077233		C230037L18Rik	-	RIKEN cDNA C230037L18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-177257542-6	chr1	177257545	177257745	+	998.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-8878.0	NM_011785	23797.0	Mm.235194	NM_011785	ENSMUSG00000019699	Akt3	AI851531|D930002M15Rik|Nmf350	thymoma viral proto-oncogene 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-102436173-2	chr11	102436076	102436276	+	652.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_199200)	TTS (NM_199200)	5854.0	NM_008175	14824.0	Mm.1568	NM_008175	ENSMUSG00000034708	Grn	Pgrn|epithelin	granulin	protein-coding	2.49612823933463	2.57675363540165	1.45294708225241	1.90683753076723	1.82446880942318	1.50421250332663	1.46233574998963	2.25258174400994	-0.998028592243513	0.319155008991652	0.821951596143819
Merged-chr5-148711635-1	chr5	148711535	148711735	+	735.0	f0_c57.idr	Intergenic	Intergenic	-30205.0	NR_028285	70138.0	Mm.417834	NR_028285	ENSMUSG00000086494	2210417A02Rik	AV081004	RIKEN cDNA 2210417A02 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106555875-2	chr11	106555775	106555975	+	749.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198292, intron 2 of 11)	intron (NM_198292, intron 2 of 11)	54884.0	NR_030703	100216537.0		NR_030703	ENSMUSG00000065126	Snord104	-	small nucleolar RNA, C/D box 104	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-139169946-4	chr4	139169846	139170046	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10709.0	NR_033543	100038595.0	Mm.385206	NR_033543	ENSMUSG00000073739	Gm16287	-	predicted gene 16287	ncRNA	4.81675678028336	4.10658780572178	3.80970966979348	3.99568390529395	4.85119753022454	4.9580732681006	4.44196906678573	4.51008430331787	0.575899553356311	0.155430750034466	0.610928767307068
Merged-chr13-94159700-4	chr13	94159616	94159816	+	883.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172589, intron 2 of 3)	intron (NM_172589, intron 2 of 3)	101920.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-69168721-5	chr12	69168668	69168868	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081406)	promoter-TSS (NM_001081406)	-46.0	NR_155206	69706.0	Mm.28847	NM_001081406	ENSMUSG00000034883	Lrr1	2410005L11Rik|AU021780|LRR-1|Ppil5	leucine rich repeat protein 1	protein-coding	4.01079821982807	3.02782122270988	2.26098719294955	3.4248584688242	3.48630553326683	3.17758851614824	3.83326522181326	3.89504294068988	0.431586302630259	0.478364304583424	0.928092227925527
Merged-chr3-153297984-3	chr3	153297883	153298083	+	795.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_126464, intron 1 of 1)	intron (NR_126464, intron 1 of 1)	666.0	NR_126464	75489.0	Mm.443252	NR_126464	ENSMUSG00000105023	1700012D16Rik	-	RIKEN cDNA 1700012D16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-99447285-4	chr11	99447185	99447385	+	941.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR49|LTR|ERVK	-9132.0	NM_023256	66809.0	Mm.28042	NM_023256	ENSMUSG00000035775	Krt20	9030623C06Rik|Ck-20|Ck20|K20|Krt21	keratin 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-30855138-1	chr3	30855038	30855238	+	658.5	f0_balb.idr	promoter-TSS (NM_001134386)	promoter-TSS (NM_001134386)	-812.0	NM_001134386	71862.0	Mm.272019	NM_027965	ENSMUSG00000037661	Gpr160	1700025D19Rik|GPCR150	G protein-coupled receptor 160	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133193404-1	chr4	133193304	133193504	+	827.0	f1_c57bl6.idr	intron (NM_153423, intron 7 of 8)	intron (NM_153423, intron 7 of 8)	-2251.0	NR_105984	102466215.0		NR_105984	ENSMUSG00000099202	Mir7017	Gm27945|mmu-mir-7017	microRNA 7017	ncRNA	0.0745422169264074	0.701911467374851	0.539725022905141	0.0818731288872614	0.221568242564682	0.592019062157796	0.0875525081218954	0.0826446655783472	-0.832807641454544	0.686375968567639	1
Merged-chr16-4316225-4	chr16	4316094	4316294	+	957.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009624, intron 3 of 10)	intron (NM_009624, intron 3 of 10)	86965.0	NR_003628	436332.0	Mm.478141	NM_001013830	ENSMUSG00000089645	Gm5766	EG436332	ribosomal protein L7a pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-95665965-2	chr1	95665865	95666065	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159745, intron 1 of 3)	intron (NM_001159745, intron 1 of 3)	1629.0	NM_009183	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-108446277-2	chr10	108446197	108446397	+	627.5	f0_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	114108.0	NM_054056	114774.0	Mm.391419	NM_054056	ENSMUSG00000035873	Pawr	2310001G03Rik|PAR4|Par-4	PRKC, apoptosis, WT1, regulator	protein-coding	1.92986651120324	1.60028524787972	2.54376014964534	1.8067021163567	1.44316059153926	1.39824668700204	2.40921421638311	1.08804110965279	-0.851704551319994	0.436264030089214	0.908101289557667
Merged-chr1-37357328-4	chr1	37357224	37357424	+	966.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030266, intron 1 of 25)	intron (NM_030266, intron 1 of 25)	-11893.0	NM_172971	269180.0	Mm.5294	NM_030266	ENSMUSG00000026113	Inpp4a	107kDa|9630012D15|D130048C09Rik|R74740	inositol polyphosphate-4-phosphatase, type I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128485617-2	chr10	128485517	128485717	+	602.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001114096, exon 26 of 29)	exon (NM_001114096, exon 26 of 29)	7392.0	NM_001317220	17904.0	Mm.337074	NM_010860	ENSMUSG00000090841	Myl6	ESMLC|LC17|LC17-GI|MLC-3|MLC1SM|Myln	myosin, light polypeptide 6, alkali, smooth muscle and non-muscle	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-118599830-4	chr10	118599731	118599931	+	947.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB7|LINE|L1	-43306.0	NR_104123	103214.0	Mm.30529	NR_104123	ENSMUSG00000112230	Ifngas1	AI447422|Tmevpg1	Ifng antisense RNA 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-148685969-4	chr2	148685860	148686060	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355689, intron 2 of 5)	intron (NM_001355689, intron 2 of 5)	4840.0	NM_028986	74533.0	Mm.136913	NM_028986	ENSMUSG00000027439	Gzf1	8430437G08Rik|Zfp336|mGZF1	GDNF-inducible zinc finger protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98401002-2	chr11	98400902	98401102	+	760.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033537)	promoter-TSS (NM_001033537)	-512.0	NM_001033537	320655.0	Mm.86519	NM_001033537	ENSMUSG00000038208	Pgap3	CAB2|D430035D22Rik|Perld1	post-GPI attachment to proteins 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-16075045-2	chr16	16074945	16075145	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355731, intron 5 of 18)	Lx2B2|LINE|L1	71806.0	NM_001355731	224008.0	Mm.244703	NM_146068	ENSMUSG00000041974	Spidr	2310008H04Rik|Kiaa0146	scaffolding protein involved in DNA repair	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-36598513-4	chr16	36598399	36598599	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36365.0	NM_013803	12374.0	Mm.103619	NM_013803	ENSMUSG00000051980	Casr	CaR|Gprc2a	calcium-sensing receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-90059522-3	chr9	90059424	90059624	+	748.099976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001312649, intron 1 of 10)	RMER15|LTR|ERVL	5257.0	NM_001312649	13036.0	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-79034722-3	chr14	79034604	79034804	+	961.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027906, intron 20 of 44)	intron (NM_027906, intron 20 of 44)	164486.0	NR_152203	100043765.0	Mm.435553	NR_152203	ENSMUSG00000115111	Gm4632	-	predicted gene 4632	ncRNA	1.21250782523589	2.35624623870864	2.42145229382753	1.8188370640101	2.22699804644071	3.03097008551266	4.16223877904851	2.91992314352047	2.3413961639512	0.00575540922379443	0.0744644858379786
Merged-chr7-80343541-2	chr7	80343441	80343641	+	868.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_026812, exon 2 of 4)	exon (NM_026812, exon 2 of 4)	404.0	NM_026812	68695.0	Mm.21171	NM_026812	ENSMUSG00000030532	Hddc3	1110033O09Rik|C86475|MESH1	HD domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-40466820-1	chr9	40466720	40466920	+	668.0	f0_balb.idr	intron (NM_001357617, intron 1 of 20)	T-rich|Low_complexity|Low_complexity	-11056.0	NM_172768	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	1.08080857507055	0.655295107140896	0.641474597511208	0.630603663214854	1.41063218812527	0.658370653065099	1.56604594744287	1.75981869739086	2.95109124164409	0.067744087923367	0.390265797169282
Merged-chr8-3718733-4	chr8	3718636	3718836	+	821.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029465, intron 3 of 8)	intron (NM_029465, intron 3 of 8)	1915.0	NM_029465	75863.0	Mm.109183	NM_029465	ENSMUSG00000074491	Clec4g	4930572L20Rik	C-type lectin domain family 4, member g	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-151001565-3	chr1	151001481	151001681	+	729.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8146.0	NM_001024720	545370.0	Mm.379425	NM_001024720	ENSMUSG00000066842	Hmcn1	EG545370|FIBL-6|Gm201	hemicentin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-102636738-3	chr9	102636633	102636833	+	890.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10437.0	NM_181394	69010.0	Mm.2000	NM_181394	ENSMUSG00000035048	Anapc13	1810004D07Rik|APC13|SWM1	anaphase promoting complex subunit 13	protein-coding	0.928215036643134	0.56899703228507	0.360616059793336	0.354662568701788	0.745862542366313	0.574354866853607	1.16233119510695	0.35570434607352	0.943888776539281	0.59203656381834	1
Merged-chr4-53119579-2	chr4	53119479	53119679	+	997.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 5 of 49)	intron (NM_013454, intron 5 of 49)	40316.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-84174041-2	chr12	84173941	84174141	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001163502, exon 2 of 13)	exon (NM_001163502, exon 2 of 13)	19974.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-97331254-3	chr7	97331132	97331332	+	847.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1091.0	NM_001039039	622320.0	Mm.334029	NM_001039039	ENSMUSG00000044952	Kctd21	EG622320	potassium channel tetramerisation domain containing 21	protein-coding	0.611846045711652	1.24110119284589	0.322794910102043	0.315593550881766	0.305292222784847	1.14946419708772	0.324840707433239	0.66895957546314	-0.12056581579599	0.947614047218201	1
Merged-chr3-115729364-4	chr3	115729277	115729477	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14322.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-97358229-1	chr7	97358129	97358329	+	564.0	f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-13388.0	NM_199035	381903.0	Mm.279683	NM_199035	ENSMUSG00000035704	Alg8	AI447372|Gm1089	asparagine-linked glycosylation 8 (alpha-1,3-glucosyltransferase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-29945075-2	chr19	29944975	29945175	+	715.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164724)	promoter-TSS (NM_001164724)	-715.0	NM_001164724	77125.0	Mm.182359	NM_133775	ENSMUSG00000024810	Il33	9230117N10Rik|Il-33|Il1f11|NF-HEV	interleukin 33	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-79672085-2	chr10	79671985	79672185	+	675.200012	f1_balb.idr|f1_c57bl6.idr	intron (NM_148934, intron 1 of 1)	intron (NM_148934, intron 1 of 1)	2675.0	NM_148934	110012.0	Mm.22623	NM_148934	ENSMUSG00000020308	Tpgs1	AV005629|Gm16517|Gtrgeo22|PGs1	tubulin polyglutamylase complex subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-64704193-2	chr9	64704093	64704293	+	578.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001134399, intron 23 of 24)	intron (NM_001134399, intron 23 of 24)	33563.0	NM_017382	53869.0	Mm.1387	NM_017382	ENSMUSG00000004771	Rab11a	-	RAB11A, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-79533049-2	chr14	79532949	79533149	+	712.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286411, intron 1 of 8)	intron (NM_001286411, intron 1 of 8)	17375.0	NM_001286411	13709.0	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-32486026-3	chr4	32485924	32486124	+	689.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109661, intron 1 of 4)	intron (NM_001109661, intron 1 of 4)	68589.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	-0.271474883266215	-0.0582940304603568	-0.261623445873022	-0.265323571049213	0.121563035504874	-0.255754196266461	0.528449903530347	-0.264676889425485	2.90457947138916	0.224902888121883	1
Merged-chr7-121080888-4	chr7	121080766	121080966	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB2|LINE|L1	-2572.0	NM_139310	246190.0	Mm.221073	NM_139310	ENSMUSG00000034990	Otoa	-	otoancorin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-160091276-4	chr2	160091174	160091374	+	994.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	74621.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-66355711-4	chr7	66355629	66355829	+	985.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146191, intron 2 of 33)	intron (NM_146191, intron 2 of 33)	25995.0	NR_106024	102465640.0		NR_106024	ENSMUSG00000098353	Mir7057	Gm27550|mmu-mir-7057	microRNA 7057	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-131352917-1	chr6	131352817	131353017	+	970.0	f1_c57bl6.idr	Intergenic	Intergenic	35533.0	NM_139117	56449.0	Mm.458000	NM_011733	ENSMUSG00000030189	Ybx3	Csda|Dpba|MSY3|MSY4|Yb2|dbpA|oxyR	Y box protein 3	protein-coding	0.959564325409169	1.49372556376692	1.5310201735291	1.4771792308434	0.967894770590361	0.687611658258233	0.675607978560896	0.665242422059199	-3.34187212728355	0.0353957272297749	0.266422795045696
Merged-chr1-162738606-3	chr1	162738512	162738712	+	684.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081290, intron 1 of 34)	MIRb|SINE|MIR	1944.0	NM_001081290	226562.0	Mm.245446	NM_001081290	ENSMUSG00000040225	Prrc2c	1810043M20Rik|9630039I18Rik|A630006J20|Bat2d|Bat2d1|Bat2l2|E130112L15Rik|Prrc3|mKIAA1096	proline-rich coiled-coil 2C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-108134861-4	chr3	108134735	108134935	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010306, intron 1 of 8)	intron (NM_010306, intron 1 of 8)	11317.0	NM_010306	14679.0	Mm.271703	NM_010306	ENSMUSG00000000001	Gnai3	AI158965|AW537698|Galphai3|Gnai-3	guanine nucleotide binding protein (G protein), alpha inhibiting 3	protein-coding	-0.973751987129437	-1.32050219810158	-1.33037402876891	-1.18315408055446	-1.34982315712777	-1.31836293121464	-1.32813926269019	-1.33703153448275	-2.1786833831128	0.521980837664253	1
Merged-chr8-122987590-2	chr8	122987490	122987690	+	742.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 1 of 12)	intron (NM_001081379, intron 1 of 12)	54694.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-99157412-2	chr12	99157312	99157512	+	713.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	5396.0	NR_038130	67639.0	Mm.87374	NR_038130	ENSMUSG00000113210	4930474N09Rik	-	RIKEN cDNA 4930474N09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-95708836-4	chr16	95708747	95708947	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011809, intron 2 of 9)	intron (NM_011809, intron 2 of 9)	6440.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-90841332-1	chr8	90841232	90841432	+	675.0	f0_balb.idr	intron (NM_177224, intron 1 of 39)	intron (NM_177224, intron 1 of 39)	12497.0	NM_177224	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	1.35507900656068	1.14940741068083	0.731840313391016	1.78536868048332	1.45963212716153	0.747519333619426	0.944142133570761	0.918636980727709	-1.05944600147958	0.45489527673456	0.919231188570946
Merged-chr1-13531701-4	chr1	13531586	13531786	+	773.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58224.0	NM_028173	72265.0	Mm.28765	NM_028173	ENSMUSG00000025935	Tram1	1810049E02Rik|TRAMP	translocating chain-associating membrane protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-45086398-3	chr9	45086298	45086498	+	994.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005421, intron 3 of 10)	intron (NM_001005421, intron 3 of 10)	7215.0	NM_001005421	270152.0	Mm.190461	NM_001005421	ENSMUSG00000048534	Jaml	AMICA|Amica1|Crea7|Gm638	junction adhesion molecule like	protein-coding	3.59391296886651	2.94952007449464	3.22143572811184	2.59753146024172	4.57888679140761	4.04827250653381	4.15588732684752	3.73730414696757	1.49014505980393	0.00477479386696439	0.0646105001682392
Merged-chr14-67945536-4	chr14	67945416	67945616	+	982.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11944.0	NM_177780	68813.0	Mm.258155	NM_177780	ENSMUSG00000044447	Dock5	1110060D06Rik|AI666732|AI956923|BC016533|E130320D18|lr2|rlc	dedicator of cytokinesis 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-57335822-2	chr16	57335722	57335922	+	545.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025599, intron 1 of 9)	RCHARR1|DNA|hAT-Charlie	-17455.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	1.84320345036153	1.74355090824479	1.98845623926193	2.05250375696147	1.85730983131464	1.75475809621613	2.51129391417183	2.06270414211391	0.47726208068671	0.608778713246643	0.974576632476413
Merged-chr11-75623098-2	chr11	75622993	75623193	+	697.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_008850, intron 10 of 11)	intron (NM_008850, intron 10 of 11)	-7927.0	NM_008916	19062.0	Mm.1458	NM_008916	ENSMUSG00000006127	Inpp5k	C62|Pps|SKIP	inositol polyphosphate 5-phosphatase K	protein-coding	0.757791246171346	0.46284468774036	0.668168612951246	0.441862265386297	0.612245867043704	1.53602352023879	0.453700850097133	1.4817415381363	2.63073218499449	0.115009458869162	0.531605896377922
Merged-chr15-79721022-3	chr15	79720939	79721139	+	930.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_013818, exon 12 of 12)	3' UTR (NM_013818, exon 12 of 12)	21497.0	NM_194342	223697.0	Mm.202715	NM_194342	ENSMUSG00000042524	Sun2	B230369L08Rik|C030011B15|Unc84b	Sad1 and UNC84 domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-69038526-4	chr8	69038413	69038613	+	970.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_153054, exon 17 of 17)	3' UTR (NM_153054, exon 17 of 17)	-50223.0	NM_007509	11966.0	Mm.249096	NM_007509	ENSMUSG00000006273	Atp6v1b2	AI194269|AI790362|Atp6b2|HO57|R74844	ATPase, H+ transporting, lysosomal V1 subunit B2	protein-coding	2.78848596791968	2.80209076343948	4.05880630988042	1.76116615974962	3.19817864036557	2.52933825077575	3.15009750525108	2.3585413339822	-0.441879283229528	0.568659021749031	0.962718661854691
Merged-chr8-39695523-4	chr8	39695443	39695643	+	677.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-52865.0	NM_001113326	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	1.4906363818159	1.05764109644317	1.03680331394546	1.41750623469372	2.09099795200223	1.68746192750881	2.19783220774025	2.0358306068828	2.5374741658401	0.0296165827983339	0.235013069057149
Merged-chr10-53344887-4	chr10	53344756	53344956	+	837.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001141927, exon 3 of 3)	3' UTR (NM_001141927, exon 3 of 3)	7170.0	NM_001141927	18821.0	Mm.34145	NM_023129	ENSMUSG00000038583	Pln	Plb	phospholamban	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-65107815-4	chr1	65107718	65107918	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001285881, exon 8 of 8)	3' UTR (NM_001285881, exon 8 of 8)	-4455.0	NM_007774	12964.0	Mm.26904	NM_007774	ENSMUSG00000044429	Cryga	Cryg-4|DGcry-4	crystallin, gamma A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-31400330-2	chr6	31400230	31400430	+	600.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013791, intron 1 of 17)	intron (NM_013791, intron 1 of 17)	1502.0	NM_013791	27418.0	Mm.238038	NM_013791	ENSMUSG00000025609	Mkln1	A130067F06Rik|AU015903|BB154892	muskelin 1, intracellular mediator containing kelch motifs	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-45013496-4	chr2	45013413	45013613	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355291, intron 4 of 9)	intron (NM_001355291, intron 4 of 9)	9664.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-149445472-4	chr4	149445379	149445579	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	9489.0	NM_022020	63954.0	Mm.46023	NM_022020	ENSMUSG00000028996	Rbp7	1110002J23Rik|CRBP-III	retinol binding protein 7, cellular	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4370250-4	chr16	4370187	4370387	+	966.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009624, intron 2 of 10)	intron (NM_009624, intron 2 of 10)	50211.0	NM_001291910	11515.0	Mm.439750	NM_009624	ENSMUSG00000005580	Adcy9	AC9|ACtp10|AW125421|D16Wsu65e|mKIAA0520	adenylate cyclase 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-4191636-2	chr5	4191536	4191736	+	541.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001042670)	promoter-TSS (NM_001042670)	-731.0	NM_001042670	208595.0	Mm.129815	NM_001042670	ENSMUSG00000053178	Mterf1b	Gm9897	mitochondrial transcription termination factor 1b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-119386919-2	chr8	119386819	119387019	+	654.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	-7973.0	NM_019966	56690.0	Mm.423037	NM_019966	ENSMUSG00000074064	Mlycd	AI324784|Mcd	malonyl-CoA decarboxylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-69699534-4	chr3	69699433	69699633	+	974.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22522.0	NM_133787	97112.0	Mm.21062	NM_133787	ENSMUSG00000027787	Nmd3	C87860	NMD3 ribosome export adaptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-103098223-2	chr14	103098123	103098323	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360342, intron 1 of 4)	intron (NM_001360342, intron 1 of 4)	781.0	NM_001360341	50789.0	Mm.214746	NM_015822	ENSMUSG00000022124	Fbxl3	AU041772|AW212966|FBK|Fbl3a|Fbxl3a|Ovtm|Play68	F-box and leucine-rich repeat protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135446150-4	chr5	135446049	135446249	+	939.30835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146001, intron 8 of 30)	L1MC3|LINE|L1	-51603.0	NM_148932	107939.0	Mm.28399	NM_148932	ENSMUSG00000053293	Pom121	2610027A18Rik|C80273|mKIAA0618	nuclear pore membrane protein 121	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-162970242-2	chr2	162970142	162970342	+	566.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081338, exon 21 of 23)	exon (NM_001081338, exon 21 of 23)	-17239.0	NM_001291154	27219.0	Mm.26462	NM_013731	ENSMUSG00000017868	Sgk2	AI098171|AW146006|Sgkl	serum/glucocorticoid regulated kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-40629734-2	chr19	40629634	40629834	+	630.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001304721, intron 1 of 9)	intron (NM_001304721, intron 1 of 9)	17368.0	NM_001304721	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-58734028-1	chr3	58733928	58734128	+	543.0	f0_balb.idr	intron (NR_045167, intron 3 of 7)	MTC|LTR|ERVL-MaLR	41439.0	NR_045167	71301.0	Mm.254475	NR_045167	ENSMUSG00000097725	4930593A02Rik	4933440I01Rik	RIKEN cDNA 4930593A02 gene	ncRNA	1.1260318881939	0.664331752899872	0.991068191637196	1.19782434253426	0.789791543418128	0.666410697014425	1.25152807501016	1.20521038911093	-0.0255667297933512	0.986178084289453	1
Merged-chr18-10706099-3	chr18	10706011	10706211	+	597.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045379)	promoter-TSS (NR_045379)	585.0	NM_134130	106861.0	Mm.273108	NM_134130	ENSMUSG00000002475	Abhd3	AA675331|LABH3	abhydrolase domain containing 3	protein-coding	-1.26687315729308	-1.51144556179868	-1.52074032698608	-1.52837532385482	-1.39377469321613	-1.50943134740853	-1.5186361958831	-1.52700866306571	-0.563662181339258	0.873093626595385	1
Merged-chr12-76534508-6	chr12	76534420	76534620	+	850.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153804, intron 1 of 18)	intron (NM_153804, intron 1 of 18)	960.0	NM_153804	263406.0	Mm.291854	NM_153804	ENSMUSG00000052609	Plekhg3	BC030417	pleckstrin homology domain containing, family G (with RhoGef domain) member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-45858490-2	chr5	45858390	45858590	+	612.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163073)	promoter-TSS (NM_001163073)	-950.0	NM_001359873	209707.0	Mm.71498	NM_172153	ENSMUSG00000015882	Lcorl	Mlr1	ligand dependent nuclear receptor corepressor-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-4921515-4	chr18	4921421	4921621	+	976.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	109035.0	NR_045881	100038439.0	Mm.387569	NR_045881	ENSMUSG00000097043	Gm10556	-	predicted gene 10556	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111420105-2	chr12	111420005	111420205	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289487, intron 2 of 13)	intron (NM_001289487, intron 2 of 13)	2660.0	NM_001289488	74190.0	Mm.248640	NM_028807	ENSMUSG00000021280	Exoc3l4	1200009I06Rik|1600013K19Rik	exocyst complex component 3-like 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-54565422-4	chr13	54565341	54565541	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252648)	promoter-TSS (NM_001252648)	-59.0	NM_133797	97820.0	Mm.24593	NM_133797	ENSMUSG00000025871	4833439L19Rik	4930558H15Rik|C81457|Kiaa1191|P33monox	RIKEN cDNA 4833439L19 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-115480122-2	chr6	115480025	115480225	+	784.0	f0_balb.idr|f0_c57.idr	intron (NM_001308354, intron 7 of 7)	intron (NM_001308354, intron 7 of 7)	58059.0	NM_011146	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-96365861-2	chr11	96365761	96365961	+	576.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008266, exon 1 of 2)	exon (NM_008266, exon 1 of 2)	103.0	NM_008266	15407.0	Mm.890	NM_008266	ENSMUSG00000018973	Hoxb1	Hox-2.9	homeobox B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75756327-3	chr11	75756203	75756403	+	758.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009536, intron 3 of 5)	intron (NM_009536, intron 3 of 5)	23416.0	NM_009536	22627.0	Mm.234700	NM_009536	ENSMUSG00000020849	Ywhae	AU019196	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-9694955-3	chr14	9694856	9695056	+	828.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360141, intron 8 of 9)	intron (NM_001360141, intron 8 of 9)	-189139.0	NR_030680	100042415.0	Mm.235938	NR_030680	ENSMUSG00000089686	Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-87130853-4	chr6	87130771	87130971	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	26125.0	NM_001167937	52372.0	Mm.282851	NM_001167937	ENSMUSG00000090891	D6Ertd527e	AU043841	DNA segment, Chr 6, ERATO Doi 527, expressed	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-44924962-2	chr2	44924862	44925062	+	862.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	-63340.0	NM_172662	227835.0	Mm.314312	NM_172662	ENSMUSG00000036890	Gtdc1	E330008O22Rik	glycosyltransferase-like domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-136626226-2	chr1	136626126	136626326	+	729.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_177643, exon 2 of 2)	exon (NM_177643, exon 2 of 2)	1325.0	NM_001160251	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111908144-4	chr12	111908075	111908275	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011625)	promoter-TSS (NM_011625)	-120.0	NM_011625	21981.0	Mm.313076	NM_011625	ENSMUSG00000021285	Ppp1r13b	AI449786|ASPP1|AW545810|Tp53bp2|Trp53bp2|p85	protein phosphatase 1, regulatory (inhibitor) subunit 13B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-120480715-3	chr14	120480669	120480869	+	874.6889039999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029519, intron 1 of 1)	intron (NM_029519, intron 1 of 1)	2308.0	NM_029519	76108.0	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding	1.57855103242085	2.01498798640405	1.37084257163351	1.65459296173034	2.07392887269133	1.90641100759916	1.55800180766197	1.78932888165682	0.541593651163954	0.597573097104411	0.971981563164
Merged-chr1-157517580-2	chr1	157517480	157517680	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_033354, intron 2 of 27)	intron (NM_033354, intron 2 of 27)	-5857.0	NR_151610	102632813.0	Mm.420137	NR_151610		Gm15486	-	predicted gene 15486	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-55388335-3	chr9	55388195	55388395	+	922.8666380000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172923, intron 3 of 10)	intron (NM_172923, intron 3 of 10)	61382.0	NM_001357568	244886.0	Mm.24361	NM_172923	ENSMUSG00000032313	Tmem266	9630029F15|AI118078|HVRP1	transmembrane protein 266	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120624905-4	chr11	120624783	120624983	+	957.93335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_105901)	promoter-TSS (NR_105901)	-7.0	NR_105901	102465565.0		NR_105901	ENSMUSG00000098282	Mir6936	Gm27574|mmu-mir-6936	microRNA 6936	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-121591243-4	chr10	121591141	121591341	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359618, intron 24 of 24)	MTD|LTR|ERVL-MaLR	-4447.0	NM_019786	56480.0	Mm.34580	NM_019786	ENSMUSG00000020115	Tbk1	1200008B05Rik|AI462036|AW048562	TANK-binding kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46400874-2	chr8	46400774	46400974	+	988.8333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-70163.0	NM_007981	14081.0	Mm.210323	NM_007981	ENSMUSG00000018796	Acsl1	Acas|Acas1|Acs|FACS|Facl2|LACS 1|LACS1	acyl-CoA synthetase long-chain family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-42172728-3	chr16	42172631	42172831	+	635.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361282, intron 10 of 10)	intron (NM_001361282, intron 10 of 10)	130738.0	NR_105858	102466172.0		NR_105858	ENSMUSG00000098300	Mir6540	Gm27780|mir-6540|mmu-mir-6540	microRNA 6540	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81026300-2	chr15	81026200	81026400	+	726.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001082536, intron 4 of 13)	intron (NM_001082536, intron 4 of 13)	48535.0	NM_134091	105835.0	Mm.274943	NM_134091	ENSMUSG00000042303	Sgsm3	1810012I01Rik|AI428557|BB175482|Cip85|R75178|RUSC3|Rutbc3	small G protein signaling modulator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-111257329-2	chr8	111257229	111257429	+	622.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009149, intron 1 of 25)	intron (NM_009149, intron 1 of 25)	1873.0	NM_009149	20340.0	Mm.276271	NM_009149	ENSMUSG00000003316	Glg1	AI593353|AW537898|CFR|CFR-1|ESL-1|MG-160|MG160|Selel	golgi apparatus protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-44679421-1	chr13	44679321	44679521	+	703.666687	f0_balb.idr	Intergenic	RLTR45|LTR|ERVK	-51353.0	NM_021878	16468.0	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-94992049-4	chr11	94991987	94992187	+	807.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172261, exon 1 of 10)	exon (NM_172261, exon 1 of 10)	875.0	NM_172261	217124.0	Mm.229087	NM_172261	ENSMUSG00000038976	Ppp1r9b	SPL|Spn	protein phosphatase 1, regulatory subunit 9B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134141892-1	chr6	134141792	134141992	+	608.0	f0_balb.idr	intron (NM_001303102, intron 3 of 8)	intron (NM_001303102, intron 3 of 8)	106192.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	0.555369268164892	0.424428951627853	0.608757758926966	0.588911405361611	1.3265289911495	0.63980746071205	1.14939519998731	0.409903576324427	2.30343400949396	0.167576169845083	1
Merged-chr9-114748546-4	chr9	114748412	114748612	+	824.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_026036, exon 4 of 4)	3' UTR (NM_026036, exon 4 of 4)	17309.0	NM_026036	67213.0	Mm.28858	NM_026036	ENSMUSG00000032434	Cmtm6	2810051A14Rik|AA536733|Cklfsf6	CKLF-like MARVEL transmembrane domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-106155408-4	chr14	106155326	106155526	+	958.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49228.0	NR_073203	212085.0	Mm.78128	NM_198601	ENSMUSG00000022113	Trim52	4921513B05Rik	tripartite motif-containing 52	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-139286392-1	chr4	139286292	139286492	+	845.0	f1_c57bl6.idr	intron (NM_001037761, intron 6 of 9)	intron (NM_001037761, intron 6 of 9)	24316.0	NR_151463	212555.0	Mm.45131	NM_145384	ENSMUSG00000028744	Pqlc2	BC019216	PQ loop repeat containing 2	protein-coding	0.502441014615989	0.522286431690151	1.05609066390707	0.510712645828253	0.75884374606321	0.865577371408879	1.23922037888748	0.80177769441789	1.5929333939271	0.342669538080228	1
Merged-chr11-75582815-2	chr11	75582715	75582915	+	867.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	polypurine|Low_complexity|Low_complexity	-5264.0	NM_008850	18738.0	Mm.3128	NM_008850	ENSMUSG00000017781	Pitpna	Pitpn|vb|vibrator	phosphatidylinositol transfer protein, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126725853-4	chr7	126725752	126725952	+	955.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-21036.0	NM_009898	12721.0	Mm.290482	NM_009898	ENSMUSG00000030707	Coro1a	Clabp|Lmb3|TACO|p57	coronin, actin binding protein 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-81743967-4	chr4	81743878	81744078	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-256965.0	NR_030570	100124446.0		NR_030570	ENSMUSG00000077941	Mir466h	Mirn466h	microRNA 466h	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-102944238-4	chr2	102944127	102944327	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42562.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-87733799-3	chr6	87733688	87733888	+	753.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159697, intron 2 of 7)	intron (NM_001159697, intron 2 of 7)	2919.0	NM_001159697	58229.0	Mm.333229	NM_021418	ENSMUSG00000068263	Efcc1	Ccdc48	EF hand and coiled-coil domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-117352471-4	chr2	117352377	117352577	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-9600.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-78896724-1	chr1	78896624	78896824	+	671.0	f1_c57bl6.idr	intron (NR_151519, intron 3 of 3)	MLT1B|LTR|ERVL-MaLR	79813.0	NM_021342	57814.0	Mm.24386	NM_021342	ENSMUSG00000047330	Kcne4	AW487937|MiRP3	potassium voltage-gated channel, Isk-related subfamily, gene 4	protein-coding	-1.02984829257602	-1.26598729172987	-1.27598232616595	-0.988925435152524	-1.29328978397535	-1.26382132607229	-1.27371966945454	-1.28272291979146	-2.24097144207091	0.505905030189596	1
Merged-chr17-45742615-2	chr17	45742515	45742715	+	780.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_152153, intron 1 of 4)	L1MB3|LINE|L1	8109.0	NR_152153	433111.0	Mm.213441	NR_152153	ENSMUSG00000097727	F630040K05Rik	-	RIKEN cDNA F630040K05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-146047931-3	chr3	146047871	146048071	+	593.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172864, intron 19 of 22)	intron (NM_172864, intron 19 of 22)	60065.0	NM_172864	242253.0	Mm.235040	NM_172864	ENSMUSG00000043020	Wdr63	4931433A13Rik|IC140|Ida7	WD repeat domain 63	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-106658445-4	chr12	106658352	106658552	+	999.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57872.0	NR_015512	71033.0	Mm.159404	NR_015512	ENSMUSG00000085820	4933406K04Rik	4930426M03Rik|4930485I22Rik|4933427G14Rik	RIKEN cDNA 4933406K04 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-73630389-4	chr5	73630297	73630497	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153568, intron 1 of 4)	intron (NM_153568, intron 1 of 4)	2024.0	NM_153568	231296.0	Mm.168948	NM_153568	ENSMUSG00000067206	Lrrc66	-	leucine rich repeat containing 66	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-76114957-4	chr2	76114864	76115064	+	943.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081033, intron 9 of 19)	intron (NM_001081033, intron 9 of 19)	-132997.0	NM_030188	78802.0	Mm.282339	NM_030188	ENSMUSG00000075271	Ttc30a1	4930506L13Rik	tetratricopeptide repeat domain 30A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-144973473-4	chr4	144973374	144973574	+	774.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001276502, exon 69 of 69)	3' UTR (NM_001276502, exon 69 of 69)	80337.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-64459313-3	chr11	64459144	64459344	+	782.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178870, intron 1 of 1)	intron (NM_178870, intron 1 of 1)	-22570.0	NR_028445	654805.0	Mm.436132	NR_028445		F930015N05Rik	-	RIKEN cDNA F930015N05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-92320994-3	chr13	92320893	92321093	+	793.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311120, intron 8 of 23)	L1MA9|LINE|L1	-33790.0	NM_010049	13361.0	Mm.23695	NM_010049	ENSMUSG00000021707	Dhfr	8430436I03Rik|AA607882|AI662710|AW555094	dihydrofolate reductase	protein-coding	1.2983430806763	0.9908657629468	0.968582276737487	1.36849462604928	1.98792705015999	2.51157185167727	1.73547745814249	1.67649670156221	2.91537546195932	0.0160318040501271	0.152033339955613
Merged-chr16-17614838-2	chr16	17614738	17614938	+	640.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-4516.0	NM_001164611	77626.0	Mm.34659	NM_029945	ENSMUSG00000005899	Smpd4	4122402O22Rik	sphingomyelin phosphodiesterase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-50699255-2	chr9	50699155	50699355	+	951.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178118, intron 5 of 19)	CpG	28729.0	NM_178118	330938.0	Mm.82598	NM_178118	ENSMUSG00000032064	Dixdc1	4930563F16Rik|BC048182|Ccd1|Ccd1Aalpha1L|Ccd1Abeta1L|Ccd1BalphaL|Ccd1BbetaL|Ccd1CL|mKIAA1735	DIX domain containing 1	protein-coding	-0.415054958830686	-0.63347120604491	-0.635928101798157	-0.498088364836506	-0.409564644979744	-0.632913349090674	-0.63538873052776	-0.374648446916683	0.477691616802766	0.852855411798259	1
Merged-chr14-25522649-2	chr14	25522549	25522749	+	760.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 2 of 23)	intron (NM_183208, intron 2 of 23)	-11790.0	NR_037236	100526533.0		NR_037236	ENSMUSG00000093081	Mir3075	mir-3075|mmu-mir-3075	microRNA 3075	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-108853081-4	chr9	108852952	108853152	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134420)	promoter-TSS (NM_134420)	-991.0	NM_134420	171429.0	Mm.45201	NM_134420	ENSMUSG00000023259	Slc26a6	B930010B04Rik|CFEX|Pat-1|Pat1	solute carrier family 26, member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114909162-4	chr11	114909058	114909258	+	963.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19117.0	NM_170758	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-23105466-2	chr16	23105366	23105566	+	576.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-2002.0	NR_152586	13682.0	Mm.260084	NM_013506	ENSMUSG00000022884	Eif4a2	4833432N07Rik|BM-010|Ddx2b|Eif4|eIF-4A-II|eIF4A-II	eukaryotic translation initiation factor 4A2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-62360837-4	chr15	62360736	62360936	+	649.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-141385.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	1.38589721369943	2.53320803224601	3.1224383298351	3.03642633631285	2.58981575800499	2.68179877216339	2.32557661645198	2.72159154242079	-0.196502788518099	0.814099697429931	0.998431161219273
Merged-chr12-99297952-3	chr12	99297849	99298049	+	921.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183186, intron 3 of 5)	MLT1A|LTR|ERVL-MaLR	-135141.0	NR_038130	67639.0	Mm.87374	NR_038130	ENSMUSG00000113210	4930474N09Rik	-	RIKEN cDNA 4930474N09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70396458-3	chr11	70396356	70396556	+	798.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029231, intron 12 of 16)	intron (NM_029231, intron 12 of 16)	13575.0	NM_029231	75273.0	Mm.340601	NM_029231	ENSMUSG00000018921	Pelp1	4930563C04Rik|MNAR	proline, glutamic acid and leucine rich protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-20699693-2	chr14	20699593	20699793	+	873.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028428, exon 3 of 3)	3' UTR (NM_028428, exon 3 of 3)	-3334.0	NM_025366	66121.0	Mm.246996	NM_025366	ENSMUSG00000063787	Chchd1	1110001O19Rik|2400010G13Rik|MRP-S37	coiled-coil-helix-coiled-coil-helix domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-72820268-3	chr5	72820173	72820373	+	918.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013689, intron 3 of 17)	intron (NM_013689, intron 3 of 17)	48175.0	NM_001113461	21682.0	Mm.319581	NM_013689	ENSMUSG00000029217	Tec	-	tec protein tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-152330813-2	chr2	152330713	152330913	+	998.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355282, intron 2 of 12)	intron (NM_001355282, intron 2 of 12)	1612.0	NM_001083921	24105.0	Mm.182145	NM_019705	ENSMUSG00000027466	Rbck1	AL033326|HOIL-1|HOIL-1L|UIP28|Ubce7ip3	RanBP-type and C3HC4-type zinc finger containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-16044887-3	chr4	16044786	16044986	+	899.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Charlie2b|DNA|hAT-Charlie	-30998.0	NM_145950	209212.0	Mm.46455	NM_145950	ENSMUSG00000041153	Osgin2	BC010311|C230027H09Rik	oxidative stress induced growth inhibitor family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-86787318-1	chr17	86787218	86787418	+	903.0	f0_balb.idr	intron (NM_010137, intron 1 of 15)	intron (NM_010137, intron 1 of 15)	33454.0	NM_010137	13819.0	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	0.273027752516415	-0.175037831388012	0.476900860262526	-0.183137900006326	0.0780038178054644	-0.174005404503027	-0.178604705653543	-0.182522461301655	-2.16866430016325	0.368110767990085	1
Merged-chr5-73283902-2	chr5	73283802	73284002	+	567.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_040688, intron 1 of 3)	Lx9|LINE|L1	282.0	NR_040689	72276.0	Mm.271215	NR_040687	ENSMUSG00000100175	1700025M24Rik	-	RIKEN cDNA 1700025M24 gene	ncRNA	-0.0931731299279915	-0.820737524322965	-0.824978148947951	-0.827565556233284	-0.831224783701753	-0.614583390351796	-0.824238807171589	-0.827113418129207	-2.19318594653049	0.460246243175553	1
Merged-chr9-24542098-4	chr9	24541998	24542198	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	SYNREP_MM|Satellite|Satellite	-38958.0	NM_172920	244745.0	Mm.38526	NM_172920	ENSMUSG00000043067	Dpy19l1	1100001I19Rik|6030402K12|AI225861|AW558481	dpy-19-like 1 (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-148488514-2	chr5	148488414	148488614	+	869.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	63159.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-157204527-10	chr2	157204349	157204549	+	907.7700199999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001139516)	promoter-TSS (NM_001139516)	85.0	NM_011249	19650.0	Mm.244671	NM_011249	ENSMUSG00000027641	Rbl1	AW547426|PRB1|p107	RB transcriptional corepressor like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36384672-2	chr18	36384572	36384772	+	988.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081365, intron 2 of 2)	intron (NM_001081365, intron 2 of 2)	36048.0	NM_001081365	66060.0	Mm.272527	NM_001081365	ENSMUSG00000046727	Cystm1	0610010O12Rik	cysteine-rich transmembrane module containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-39587056-1	chr18	39586956	39587156	+	573.0	f0_balb.idr	Intergenic	Intergenic	-99811.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-78671652-4	chr9	78671549	78671749	+	864.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153098, intron 15 of 32)	intron (NM_153098, intron 15 of 32)	56103.0	NM_153098	235505.0	Mm.32955	NM_153098	ENSMUSG00000046186	Cd109	9930012E15Rik|AI480638|GARP	CD109 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-130257574-2	chr5	130257474	130257674	+	875.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153350, intron 1 of 15)	B1F|SINE|Alu	537.0	NM_001015876	100929.0	Mm.271296	NM_178897	ENSMUSG00000056310	Tyw1	AW125391|Rsafd1	tRNA-yW synthesizing protein 1 homolog (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-25823641-4	chr17	25823542	25823742	+	955.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173741)	promoter-TSS (NM_173741)	15.0	NM_173741	268933.0	Mm.95512	NM_173741	ENSMUSG00000025737	Wdr24	BC037651	WD repeat domain 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-20794064-4	chr14	20793973	20794173	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039138)	promoter-TSS (NM_001039138)	15.0	NM_001039138	12325.0	Mm.235182	NM_178597	ENSMUSG00000021820	Camk2g	Camkg	calcium/calmodulin-dependent protein kinase II gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-43868019-5	chr5	43868001	43868201	+	981.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007646)	promoter-TSS (NM_007646)	-708.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	3.66546105050577	4.11528235210069	5.17680075041918	3.55242945095894	4.63059595817449	4.28106995942765	4.47968025345709	3.38057350874509	-0.0315290698321753	0.950691146653259	0.998431161219273
Merged-chr17-57288431-2	chr17	57288331	57288531	+	809.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163816, intron 1 of 25)	ZP3AR|Satellite|Satellite	9331.0	NM_001163815	22324.0	Mm.248172	NM_011691	ENSMUSG00000034116	Vav1	Vav|vav-T	vav 1 oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-12241105-4	chr4	12241009	12241209	+	932.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69094.0	NM_026558	68099.0	Mm.25340	NM_026558	ENSMUSG00000028218	Fam92a	6720467C03Rik|Fam92a1	family with sequence similarity 92, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-114014862-2	chr5	114014762	114014962	+	707.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286397, intron 4 of 9)	MIRc|SINE|MIR	10054.0	NM_001286396	13142.0	Mm.20115	NM_010018	ENSMUSG00000042096	Dao	AI987963|DAAO|DAMOX|Dao-1|Dao1	D-amino acid oxidase	protein-coding	-0.846755838781365	-0.833994026935199	-0.024967771609966	-0.84209062846828	-0.686233310640013	-0.830987738823762	-0.838492001568705	-0.841600955364382	-2.35902526805363	0.421669544766396	1
Merged-chr17-28485486-5	chr17	28485273	28485473	+	743.090027	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010220, intron 1 of 10)	RSINE1|SINE|B4	776.0	NM_010220	14229.0	Mm.276405	NM_010220	ENSMUSG00000024222	Fkbp5	D17Ertd592e|Dit1|FKBP-5|FKBP51	FK506 binding protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-57588360-2	chr8	57588260	57588460	+	849.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001167981, intron 1 of 11)	intron (NM_001167981, intron 1 of 11)	-63393.0	NR_040698	100502619.0	Mm.393851	NR_040698		AW046200	-	expressed sequence AW046200	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-10077320-4	chr3	10077195	10077395	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10982.0	NR_045710	100041480.0	Mm.455632	NR_045710	ENSMUSG00000049230	Gm9833	-	myelin basic protein expression factor 2, repressor pseudogene	pseudo	2.55365448298313	3.07704022212178	3.14508892099952	2.45740495956912	2.34805154068759	3.3549978622809	3.08641933946668	1.77178992368097	-0.107612069537784	0.887933940550409	0.998431161219273
Merged-chr2-58183861-4	chr2	58183751	58183951	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19877.0	NR_045895	100042926.0	Mm.446515	NR_045895	ENSMUSG00000086862	Gm13546	-	predicted gene 13546	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5604807-2	chr17	5604707	5604907	+	555.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	112207.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-155133511-4	chr2	155133416	155133616	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008395)	promoter-TSS (NM_008395)	35.0	NM_008395	16396.0	Mm.208286	NM_008395	ENSMUSG00000027598	Itch	6720481N21Rik|8030492O04Rik|A130065M08|AIP4|C230047C07Rik	itchy, E3 ubiquitin protein ligase	protein-coding	2.86632633325068	1.68884347457469	3.01291014569057	3.66077118866106	3.51103158997149	2.90685223271277	2.92755578513419	3.56347585672394	0.459432523853206	0.517510533640129	0.947641799425091
Merged-chr5-118267015-2	chr5	118266913	118267113	+	869.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	21786.0	NM_001081236	76792.0	Mm.103428	NM_001081236	ENSMUSG00000032840	2410131K14Rik	-	RIKEN cDNA 2410131K14 gene	protein-coding	-0.391576954262341	-0.517340489662345	-0.520762687953453	-0.0121983929920566	-0.527095534610047	-0.516567096097321	-0.52000913436352	-0.110316413515512	-0.659143899526938	0.803338156251245	1
Merged-chr2-90464281-2	chr2	90464181	90464381	+	668.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 6 of 23)	MTD|LTR|ERVL-MaLR	14893.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-45038200-4	chr14	45038079	45038279	+	982.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB5|LINE|L1	50068.0	NM_008964	19217.0	Mm.4630	NM_008964	ENSMUSG00000037759	Ptger2	EP2|Ptgerep2	prostaglandin E receptor 2 (subtype EP2)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-148559648-4	chr5	148559547	148559747	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-6859.0	NM_001359199	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	4.81518791091348	4.26018929054101	3.75932478108176	4.0095883407572	4.79214978643408	4.22417237865825	4.43752462481912	3.2881681862678	0.0217744512068992	0.963347937463584	0.998431161219273
Merged-chr9-70943589-3	chr9	70943479	70943679	+	851.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001324472, intron 1 of 9)	MTE2a|LTR|ERVL-MaLR	8642.0	NM_001324472	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-37448101-4	chr6	37447989	37448189	+	852.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5941.0	NM_178661	208647.0	Mm.169929	NM_178661	ENSMUSG00000038648	Creb3l2	BBF2H7|C530025K05Rik|SCIRR69	cAMP responsive element binding protein 3-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-113627795-2	chr5	113627695	113627895	+	719.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008153, intron 1 of 2)	intron (NM_008153, intron 1 of 2)	15808.0	NM_001359060	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-135106058-3	chr1	135105954	135106154	+	674.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033409)	promoter-TSS (NM_001033409)	-778.0	NM_001033409	329252.0	Mm.279594	NM_001033409	ENSMUSG00000042793	Lgr6	A530037C04Rik|D830026M09	leucine-rich repeat-containing G protein-coupled receptor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-142589022-3	chr3	142588890	142589090	+	837.733337	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A0|LTR|ERVL-MaLR	-5857.0	NM_010259	14468.0	Mm.457978	NM_010259	ENSMUSG00000040264	Gbp2b	Gbp-1|Gbp1|Mag-1|Mpa-1|Mpa1	guanylate binding protein 2b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-55888415-2	chr16	55888315	55888515	+	819.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001134457, intron 2 of 5)	intron (NM_001134457, intron 2 of 5)	6864.0	NM_001134457	385658.0	Mm.310635	NM_001134457	ENSMUSG00000075033	Nxpe3	Fam55c|Gm1752|Gm611	neurexophilin and PC-esterase domain family, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102330965-1	chr12	102330865	102331065	+	866.5	f0_balb.idr	intron (NM_177620, intron 3 of 9)	MLT1I|LTR|ERVL-MaLR	47324.0	NM_001161365	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75682804-1	chr11	75682704	75682904	+	550.0	f1_c57bl6.idr	intron (NM_001277221, intron 1 of 1)	B1_Mur2|SINE|Alu	3545.0	NM_001277221	12928.0	Mm.280125	NM_133656	ENSMUSG00000017776	Crk	Crk-I|Crk-II|Crk-III|Crk3|CrkIII|Crko|c-Crk|p38	v-crk avian sarcoma virus CT10 oncogene homolog	protein-coding	-0.0676851875040803	-0.0447925734968273	0.905199759528918	-0.0579724082260243	0.842660844931697	-0.0431355509264233	-0.0505565133213223	-0.0569595178018103	-0.143761082406757	0.950964269189514	1
Merged-chr1-106389861-4	chr1	106389767	106389967	+	943.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_133821, exon 16 of 17)	exon (NM_133821, exon 16 of 17)	156764.0	NR_106164	102466254.0		NR_106164	ENSMUSG00000098344	Mir3473f	Gm27846|mmu-mir-3473f	microRNA 3473f	ncRNA	1.21996044037794	1.81093941084659	0.695847715984363	1.17765401801531	0.992543715844059	0.937072584016442	0.698616897816481	1.18467313098248	-1.40106697885312	0.322841094772845	0.825191191965188
Merged-chr15-58875975-4	chr15	58875866	58876066	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_026642, exon 1 of 1)	3' UTR (NM_026642, exon 1 of 1)	3317.0	NM_026642	68260.0	Mm.278805	NM_026642	ENSMUSG00000037085	Trmt12	4632406N01Rik|AI449275|Tyw2	tRNA methyltranferase 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4099975-4	chr19	4099902	4100102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_075078)	promoter-TSS (NR_075078)	4.0	NR_075078	18739.0	Mm.1860	NM_008851	ENSMUSG00000024851	Pitpnm1	DRES9|Mpt-1|Nir-2|PITPnm 1|Pitpnm|R75447|Rd9|RdgB|RdgB1	phosphatidylinositol transfer protein, membrane-associated 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-74216915-2	chr18	74216815	74217015	+	978.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028868, intron 1 of 14)	intron (NM_028868, intron 1 of 14)	703.0	NM_028868	74322.0	Mm.17537	NM_028868	ENSMUSG00000024560	Cxxc1	2410002I16Rik|5830420C16Rik|AI426635|Cfp1|Cgbp|PHF18	CXXC finger 1 (PHD domain)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-20305851-3	chr13	20305744	20305944	+	784.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 13 of 21)	intron (NM_080288, intron 13 of 21)	-167146.0	NM_198093	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	-0.662826441749988	-1.00555184936033	-1.01675512286785	-1.01992432642343	-0.654846858003193	-1.00312405325568	-1.01421894731451	-1.01959449741028	0.0418081237259606	0.989738874530268	1
Merged-chr1-177248875-3	chr1	177248736	177248936	+	771.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011785)	promoter-TSS (NM_011785)	-69.0	NM_011785	23797.0	Mm.235194	NM_011785	ENSMUSG00000019699	Akt3	AI851531|D930002M15Rik|Nmf350	thymoma viral proto-oncogene 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47011153-4	chr17	47011051	47011251	+	994.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177374)	promoter-TSS (NM_001177374)	-619.0	NM_001177374	224826.0	Mm.28234	NM_146078	ENSMUSG00000023977	Ubr2	9930021A08Rik|AI462103|AW540746|E130209G04Rik|mKIAA0349	ubiquitin protein ligase E3 component n-recognin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-5332503-2	chr18	5332403	5332603	+	773.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360447, intron 1 of 4)	intron (NM_001360447, intron 1 of 4)	1936.0	NM_178722	240186.0	Mm.118257	NM_178722	ENSMUSG00000050945	Zfp438	9430031G09|9430091M14Rik|B830013J05Rik	zinc finger protein 438	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-66007815-2	chr5	66007715	66007915	+	551.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3530.0	NR_027961	231253.0	Mm.436542	NM_177679	ENSMUSG00000054598	9130230L23Rik	-	RIKEN cDNA 9130230L23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117451961-1	chr10	117451861	117452061	+	540.0	f1_balb.idr	Intergenic	B1_Mur2|SINE|Alu	-4526.0	NR_152734	102634600.0	Mm.399106	NR_152734	ENSMUSG00000112344	Gm32141	-	predicted gene, 32141	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-94476535-3	chr3	94476438	94476638	+	762.755554	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1757.0	NM_001289616	78784.0	Mm.44292	NM_172434	ENSMUSG00000028137	Celf3	4930415M08Rik|BRUNOL1|CAGH4|ERDA4|ETR-1|Tnrc4	CUGBP, Elav-like family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107601494-1	chr9	107601394	107601594	+	791.0	f1_balb.idr	non-coding (NR_111986, exon 11 of 18)	non-coding (NR_111986, exon 11 of 18)	3908.0	NM_009153	20347.0	Mm.4083	NM_009153	ENSMUSG00000057969	Sema3b	SemA|Semaa|sema5|semaV	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-20795768-2	chr18	20795668	20795868	+	973.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-49364.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-96870668-3	chr7	96870511	96870711	+	780.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011858, intron 26 of 32)	MIRc|SINE|MIR	-69062.0	NR_045874	791381.0	Mm.402112	NR_045874	ENSMUSG00000053049	Gm15413	-	predicted gene 15413	ncRNA	-2.05752322593321	-2.15521190974092	-2.16307242109104	-2.16952927915413	-2.17938029103484	-2.15350850414045	-2.16129297361887	-2.16837350464794	-0.683654500252594	0.846597994014493	1
Merged-chr1-131053402-4	chr1	131053286	131053486	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008551)	TTS (NM_008551)	33541.0	NM_010548	16153.0	Mm.874	NM_010548	ENSMUSG00000016529	Il10	CSIF|Il-10	interleukin 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99473756-3	chr15	99473653	99473853	+	773.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029236, intron 1 of 1)	intron (NM_029236, intron 1 of 1)	977.0	NM_029236	75284.0	Mm.32826	NM_029236	ENSMUSG00000037525	Bcdin3d	4930556P03Rik|AV138748	BCDIN3 domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-53263164-2	chr18	53263064	53263264	+	630.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029394, intron 1 of 6)	intron (NM_029394, intron 1 of 6)	17502.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-14066045-2	chr13	14065945	14066145	+	632.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_194262, intron 2 of 23)	intron (NM_194262, intron 2 of 23)	2261.0	NM_198122	94246.0	Mm.439784	NM_194262	ENSMUSG00000039219	Arid4b	BCAA|BRCAA1|RBBP1L1|Rbp1l1|SAP180	AT rich interactive domain 4B (RBP1-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-156686686-1	chr2	156686586	156686786	+	794.0	f0_balb.idr	intron (NM_146128, intron 2 of 12)	intron (NM_146128, intron 2 of 12)	34223.0	NR_040505	74846.0	Mm.443946	NR_040505	ENSMUSG00000086638	4930405A21Rik	-	RIKEN cDNA 4930405A21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-56213586-2	chr9	56213486	56213686	+	807.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172924, intron 6 of 6)	intron (NM_172924, intron 6 of 6)	-52516.0	NM_019793	56434.0	Mm.28484	NM_019793	ENSMUSG00000032324	Tspan3	1700055K04Rik|TM4-A|Tm4sf8	tetraspanin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-45677861-4	chr5	45677762	45677962	+	836.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019438, intron 7 of 20)	MTD|LTR|ERVL-MaLR	7937.0	NM_019438	54392.0	Mm.32012	NM_019438	ENSMUSG00000015880	Ncapg	5730507H05Rik|Hcapg|MFT.M05.13	non-SMC condensin I complex, subunit G	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126839660-4	chr8	126839550	126839750	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9370.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-135598639-4	chr7	135598533	135598733	+	945.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316680, intron 1 of 20)	intron (NM_001316680, intron 1 of 20)	5152.0	NM_001316680	19267.0	Mm.945	NM_011212	ENSMUSG00000041836	Ptpre	PTPe|PTPepsilon|RPTPepsilon	protein tyrosine phosphatase, receptor type, E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-74975689-4	chr5	74975586	74975786	+	818.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26492.0	NR_045866	619945.0	Mm.359372	NM_001037908	ENSMUSG00000072874	Gm6116	EG619945	predicted gene 6116	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117361245-2	chr8	117361145	117361345	+	751.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028941, intron 1 of 20)	intron (NM_028941, intron 1 of 20)	12075.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98966570-2	chr11	98966470	98966670	+	659.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361954, intron 2 of 7)	(CA)n|Simple_repeat|Simple_repeat	1698.0	NM_001361954	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-29609269-4	chr6	29609186	29609386	+	728.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361290, intron 1 of 23)	CpG	563.0	NM_177296	320938.0	Mm.276381	NM_177296	ENSMUSG00000012535	Tnpo3	5730544L10Rik|C430013M08Rik|C81142|D6Ertd313e|Trn-SR|mKIAA4133	transportin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-19199805-2	chr10	19199705	19199905	+	722.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_038021, intron 3 of 3)	L3|LINE|CR1	32567.0	NR_038022	100504265.0	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34034271-4	chr17	34034118	34034318	+	922.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205214, intron 4 of 9)	intron (NM_001205214, intron 4 of 9)	1868.0	NM_001205215	20182.0	Mm.1243	NM_011306	ENSMUSG00000039656	Rxrb	AL023085|H-2RIIBP|Nr2b2|RCoR-1|Rub	retinoid X receptor beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-101552962-4	chr9	101552853	101553053	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	210759.0	NR_110509	102633035.0	Mm.411422	NR_110509	ENSMUSG00000101941	Gm28979	-	predicted gene 28979	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-31050433-4	chr9	31050335	31050535	+	918.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001115130, intron 1 of 5)	B4A|SINE|B4	19791.0	NM_172765	235132.0	Mm.239355	NM_172765	ENSMUSG00000047412	Zbtb44	6030404E16Rik|Btbd15|E230011F09	zinc finger and BTB domain containing 44	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-14953657-4	chr17	14953554	14953754	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024250, intron 7 of 11)	intron (NM_024250, intron 7 of 11)	7606.0	NM_001360983	72057.0	Mm.440085	NM_024250	ENSMUSG00000023883	Phf10	1810055P05Rik|AV024533	PHD finger protein 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-110759409-2	chr9	110759311	110759511	+	556.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4270.0	NM_010859	17897.0	Mm.7353	NM_010859	ENSMUSG00000059741	Myl3	MLC1s|MLC1v|Mylc|VLC1	myosin, light polypeptide 3	protein-coding	-0.0622709902241835	-0.17035961206642	-0.17359058135692	0.182165826768062	0.141445918934511	-0.169625616529188	-0.172881507253931	0.187115643700207	0.556347761822449	0.806753785598109	1
Merged-chr10-127627307-2	chr10	127627207	127627407	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	-6159.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-98733567-2	chr12	98733467	98733667	+	870.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_011877, exon 2 of 19)	exon (NM_011877, exon 2 of 19)	1078.0	NM_011877	24000.0	Mm.4420	NM_011877	ENSMUSG00000021009	Ptpn21	PTPD1|PTPRL10	protein tyrosine phosphatase, non-receptor type 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-12585476-4	chr19	12585379	12585579	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_015503)	TTS (NR_015503)	11087.0	NR_015503	74333.0	Mm.329744	NR_015503	ENSMUSG00000086213	A330040F15Rik	-	RIKEN cDNA A330040F15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-33641629-2	chr17	33641529	33641729	+	647.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_028279, exon 2 of 10)	non-coding (NR_028279, exon 2 of 10)	3534.0	NR_028279	378460.0	Mm.272606	NM_001002842	ENSMUSG00000032739	Pram1	AY665714	PML-RAR alpha-regulated adaptor molecule 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-41179598-2	chr9	41179491	41179691	+	598.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21529.0	NM_176860	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	0.76738610232965	1.15351780727757	0.500032815204341	0.493124480558848	0.483290550680172	1.03775417638536	0.854122141089182	1.16701095647333	0.769235608755522	0.641998350828949	1
Merged-chr5-122509820-2	chr5	122509720	122509920	+	759.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7595.0	NR_027838	11938.0	Mm.227583	NM_009722	ENSMUSG00000029467	Atp2a2	9530097L16Rik|D5Wsu150e|SERCA2|SERCA2B|Serca2a|mKIAA4195	ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127178408-2	chr10	127178308	127178508	+	594.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_177615, exon 4 of 17)	exon (NM_177615, exon 4 of 17)	2237.0	NM_177615	216441.0	Mm.248373	NM_177615	ENSMUSG00000040441	Slc26a10	C78409|D630010I07	solute carrier family 26, member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-58341884-3	chr10	58341774	58341974	+	602.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026148, intron 1 of 9)	intron (NM_026148, intron 1 of 9)	-10089.0	NM_001359116	110829.0	Mm.57734	NM_026148	ENSMUSG00000019920	Lims1	2310016J22Rik|4921524A02Rik|AI507642|AU021743|AW551584|C430041B13Rik|Lims1l|PINCH|PINCH1	LIM and senescent cell antigen-like domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-73063404-1	chr15	73063304	73063504	+	590.0	f1_c57bl6.idr	Intergenic	Intergenic	-2200.0	NM_001164643	76510.0	Mm.158902	NM_029640	ENSMUSG00000047921	Trappc9	1810044A24Rik|2900005P22Rik|4632408O18Rik|Ibp|Nibp|TRS130|mKIAA1882	trafficking protein particle complex 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-23610669-4	chr17	23610580	23610780	+	888.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001289484, exon 7 of 7)	exon (NM_001289484, exon 7 of 7)	9854.0	NM_001289482	332221.0	Mm.270315	NM_001033425	ENSMUSG00000023902	Zscan10	BC068284|Zfp206|Zkscan10|Znf206	zinc finger and SCAN domain containing 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-24419959-3	chr8	24419870	24420070	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18976.0	NM_026931	69068.0	Mm.25775	NM_026931	ENSMUSG00000056313	Tcim	1110065B09Rik|1810011O10Rik|AW121743|AW321058	transcriptional and immune response regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-125394369-4	chr5	125394252	125394452	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C|LTR|ERVK	-4335.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	3.80551306679626	3.73864588779609	3.68160467962827	3.3820462740598	2.59465298739924	3.05684517548084	1.92749749076574	2.45451464857712	-1.86108060215033	0.00315455523496078	0.0470086420558554
Merged-chr7-107370613-3	chr7	107370510	107370710	+	724.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021889)	promoter-TSS (NM_021889)	-180.0	NM_021889	60510.0	Mm.302793	NM_021889	ENSMUSG00000062542	Syt9	-	synaptotagmin IX	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-33918995-2	chr3	33918895	33919095	+	634.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74685.0	NM_026222	51938.0	Mm.275710	NM_026222	ENSMUSG00000027676	Ccdc39	4921507O14Rik|AI447426|AI844750|D3Ertd789e|b2b1304Clo|b2b1735Clo|b2b2025.1Clo|prh	coiled-coil domain containing 39	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45367304-7	chr7	45367240	45367440	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029741)	promoter-TSS (NM_029741)	107.0	NR_027802	50994.0	Mm.389897	NM_016664	ENSMUSG00000091510	Mtag2	MAG	metastasis associated gene 2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-37791895-2	chr15	37791795	37791995	+	664.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359844, intron 1 of 7)	CpG	105.0	NM_001170866	52589.0	Mm.283370	NM_134094	ENSMUSG00000051359	Ncald	AI848120|D030020D09Rik|D15Ertd412e	neurocalcin delta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-4190472-2	chr12	4190372	4190572	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159537, intron 3 of 21)	intron (NM_001159537, intron 3 of 21)	43493.0	NM_134046	52504.0	Mm.70546	NM_134046	ENSMUSG00000020652	Cenpo	2810429O05Rik|8430427C03Rik|D12Ertd482e	centromere protein O	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-20770205-4	chr10	20770130	20770330	+	988.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45152.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	3.77256956785675	2.58172090903573	4.30565090832916	3.73480945336201	3.63870780075873	3.08080589842008	3.58130765442594	3.10818334729974	-0.536945682578861	0.354477287287503	0.853391720177295
Merged-chr2-48639391-2	chr2	48639291	48639491	+	935.400024	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-174718.0	NM_007396	11480.0	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-63370099-4	chr17	63369998	63370198	+	994.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015794, intron 5 of 8)	intron (NM_015794, intron 5 of 8)	-57125.0	NR_130176	414079.0	Mm.444282	NR_130176	ENSMUSG00000090565	4930405O22Rik	-	RIKEN cDNA 4930405O22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-62216916-4	chr10	62216813	62217013	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197996, intron 1 of 7)	intron (NM_197996, intron 1 of 7)	14305.0	NM_197996	70423.0	Mm.416781	NM_197996	ENSMUSG00000037031	Tspan15	1110036D12Rik|2700063A19Rik|AW048364|Tm4sf15	tetraspanin 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-80816151-2	chr12	80816051	80816251	+	801.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001242419, intron 1 of 6)	intron (NM_001242419, intron 1 of 6)	25619.0	NM_001242419	217684.0	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30337180-2	chr2	30337080	30337280	+	599.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198304, intron 33 of 43)	intron (NM_198304, intron 33 of 43)	22136.0	NM_139302	227700.0	Mm.33343	NM_139302	ENSMUSG00000026860	Sh3glb2	SPAS-1	SH3-domain GRB2-like endophilin B2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-44410157-2	chr11	44410057	44410257	+	645.666626	f1_balb.idr|f1_c57bl6.idr	exon (NM_001303244, exon 5 of 8)	exon (NM_001303244, exon 5 of 8)	10094.0	NM_001303244	16160.0	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-35257206-3	chr2	35257138	35257338	+	889.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001206368, intron 1 of 16)	intron (NM_001206368, intron 1 of 16)	879.0	NM_001206368	227753.0	Mm.443	NM_146120	ENSMUSG00000026879	Gsn	ADF	gelsolin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-148044030-2	chr2	148043930	148044130	+	644.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_010446, exon 3 of 3)	exon (NM_010446, exon 3 of 3)	1434.0	NM_001291067	15376.0	Mm.938	NM_010446	ENSMUSG00000037025	Foxa2	HNF3-beta|HNF3beta|Hnf-3b|Hnf3b|Tcf-3b|Tcf3b	forkhead box A2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-20660318-1	chr14	20660218	20660418	+	554.0	f1_c57bl6.idr	exon (NM_001310431, exon 4 of 4)	exon (NM_001310431, exon 4 of 4)	-3778.0	NM_021508	59011.0	Mm.439911	NM_021508	ENSMUSG00000068697	Myoz1	2310001N11Rik|AV090278|FATZ|Myoz	myozenin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34858357-3	chr17	34858261	34858461	+	628.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_105938)	promoter-TSS (NR_105938)	-729.0	NR_105938	102465587.0		NR_105938	ENSMUSG00000098445	Mir6972	Gm27810|mmu-mir-6972	microRNA 6972	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152617263-3	chr1	152617144	152617344	+	849.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346119, intron 2 of 17)	intron (NM_001346119, intron 2 of 17)	7973.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-156258643-4	chr2	156258545	156258745	+	925.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172674, intron 4 of 17)	intron (NM_172674, intron 4 of 17)	-53828.0	NM_027585	70873.0	Mm.475234	NM_027585	ENSMUSG00000038085	Cnbd2	4921517L17Rik|5430421B09Rik|Cris	cyclic nucleotide binding domain containing 2	protein-coding	3.24302753553515	2.3958598146039	2.48085430610726	3.71714646882318	2.67537751031237	2.41507448791381	2.79190675054991	4.21079796362429	0.276083491198343	0.707765923343882	0.998431161219273
Merged-chr3-81982730-4	chr3	81982624	81982824	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-6996.0	NM_019911	56720.0	Mm.258622	NM_019911	ENSMUSG00000028011	Tdo2	AA407491|TDO|TO|chky	tryptophan 2,3-dioxygenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-66165880-4	chr5	66165762	66165962	+	818.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_040695)	TTS (NR_040695)	-13908.0	NM_001127382	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-180127871-3	chr2	180127764	180127964	+	802.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144500, intron 1 of 13)	intron (NM_144500, intron 1 of 13)	8498.0	NM_144500	228983.0	Mm.253578	NM_144500	ENSMUSG00000039050	Osbpl2	C130070J12Rik|ORP-2|Orp2|mKIAA0772	oxysterol binding protein-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-32191766-2	chr16	32191666	32191866	+	860.3333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11966.0	NM_001033539	328660.0	Mm.441006	NM_001033539	ENSMUSG00000075269	Bex6	B020003O03Rik	brain expressed family member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-99166480-2	chr11	99166380	99166580	+	834.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11403.0	NM_007719	12775.0	Mm.2932	NM_007719	ENSMUSG00000037944	Ccr7	CC-CKR-7|CCR-7|CD197|Cdw197|Cmkbr7|EBI1|Ebi1h	chemokine (C-C motif) receptor 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-149658934-2	chr4	149658834	149659034	+	583.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001029837, intron 6 of 23)	intron (NM_001029837, intron 6 of 23)	-3367.0	NR_105990	102465983.0		NR_105990	ENSMUSG00000098580	Mir7023	Gm27912|mmu-mir-7023	microRNA 7023	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-70416598-2	chr9	70416498	70416698	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007630, intron 3 of 8)	B3A|SINE|B2	4956.0	NM_007630	12442.0	Mm.22592	NM_007630	ENSMUSG00000032218	Ccnb2	CycB2	cyclin B2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-21199370-2	chr5	21199270	21199470	+	548.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_153365, intron 3 of 26)	L1VL4|LINE|L1	13103.0	NM_001359877	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-97146036-2	chr13	97145936	97146136	+	845.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271465, intron 4 of 20)	intron (NM_001271465, intron 4 of 20)	8099.0	NM_001271464	320806.0	Mm.219675	NM_177266	ENSMUSG00000021666	Gfm2	6530419G12Rik|A930009M04Rik|EF-G2mt|EFG2|MST027|RRF2mt	G elongation factor, mitochondrial 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71262320-2	chr17	71262213	71262413	+	905.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357338, intron 4 of 7)	RSINE1|SINE|B4	48698.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139391022-1	chr5	139390922	139391122	+	541.0	f1_balb.idr	intron (NM_001038703, intron 1 of 1)	intron (NM_001038703, intron 1 of 1)	1118.0	NM_001038703	80290.0	Mm.270003	NM_030258	ENSMUSG00000044197	Gpr146	BC003323|D830046C22Rik|PGR8	G protein-coupled receptor 146	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-31223695-2	chr6	31223595	31223795	+	945.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_040260, intron 1 of 5)	intron (NR_040260, intron 1 of 5)	3344.0	NR_040259	73652.0	Mm.441297	NR_040257	ENSMUSG00000087380	2210408F21Rik	-	RIKEN cDNA 2210408F21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-111058068-4	chr9	111057904	111058104	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302376)	promoter-TSS (NM_001302376)	-486.0	NM_001302376	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	6.19050855502829	6.23278708920572	6.33977619090546	5.65595299095944	6.69930267659968	7.20319481455959	6.90184853921985	6.3371574164395	0.740314444849133	0.00150070118478816	0.0270351543770096
Merged-chr8-120332843-4	chr8	120332739	120332939	+	882.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-104609.0	NR_110496	434353.0	Mm.411793	NR_110496	ENSMUSG00000097960	A330074K22Rik	-	RIKEN cDNA A330074K22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-72558152-2	chr14	72558052	72558252	+	772.5	f0_balb.idr|f1_balb.idr	intron (NM_207636, intron 19 of 25)	intron (NM_207636, intron 19 of 25)	151851.0	NM_207636	319448.0	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70206614-3	chr14	70206511	70206711	+	794.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271407)	promoter-TSS (NM_001271407)	-589.0	NM_001271407	20410.0	Mm.5068	NM_011366	ENSMUSG00000022091	Sorbs3	SCAM-1|SH3P3|Sh3d4|vinexin-g	sorbin and SH3 domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-106145509-4	chr8	106145402	106145602	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2B|LTR|ERVL	-4852.0	NM_133792	192654.0	Mm.284770	NM_133792	ENSMUSG00000031903	Pla2g15	ACS|C87498|LLPL|Lpla2|Lypla3	phospholipase A2, group XV	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-120084932-2	chr2	120084832	120085032	+	563.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51499.0	NM_145378	211429.0	Mm.41467	NM_145378	ENSMUSG00000098488	Pla2g4b	A030011C02Rik|Gm1013|cPLA2-beta	phospholipase A2, group IVB (cytosolic)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-120166714-2	chr2	120166614	120166814	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177845, exon 20 of 20)	3' UTR (NM_177845, exon 20 of 20)	-12139.0	NM_133838	98878.0	Mm.132226	NM_133838	ENSMUSG00000027293	Ehd4	2210022F10Rik|AI197390|AI846352|AV006278|Past2	EH-domain containing 4	protein-coding	-1.52696403314699	-1.49523967873556	-1.5048333853602	-1.51271394162622	-1.52473704212565	-1.49316068248889	-1.50266158046844	-1.06847079017215	2.01069003169785	0.564432837776867	1
Merged-chr12-80327184-6	chr12	80327046	80327246	+	769.944458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	64531.0	NR_037207	100526530.0		NR_037207	ENSMUSG00000105972	Mir1843a	Mir1843|mir-1843a|mmu-mir-1843|mmu-mir-1843a	microRNA 1843a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-51178738-4	chr17	51178629	51178829	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028162, intron 1 of 21)	CpG	623.0	NM_028162	72238.0	Mm.120650	NM_028162	ENSMUSG00000023923	Tbc1d5	1600014N05Rik	TBC1 domain family, member 5	protein-coding	4.30257013296278	3.79027857460182	5.03791286329214	4.84472823233391	4.50705009306934	4.24131834440399	4.80668398937363	5.18409639246069	0.190953603991589	0.640132956383248	0.982599433509505
Merged-chr3-37617171-1	chr3	37617071	37617271	+	592.0	f0_balb.idr	Intergenic	Intergenic	3258.0	NR_130161	75947.0	Mm.109620	NR_130161	ENSMUSG00000085677	4930594O21Rik	-	RIKEN cDNA 4930594O21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-61854409-7	chr11	61854313	61854513	+	972.0714109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013881, intron 1 of 26)	CpG	679.0	NM_013881	29869.0	Mm.162025	NM_013881	ENSMUSG00000004798	Ulk2	A830085I22Rik|AU015340|Unc51.2|mKIAA0623	unc-51 like kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-20673364-1	chr17	20673264	20673464	+	705.0	f1_c57bl6.idr	Intergenic	RMER13A|LTR|ERVK	-14144.0	NM_134191	171225.0	Mm.377184	NM_134191	ENSMUSG00000042848	Vmn1r226	V1re2	vomeronasal 1 receptor 226	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-12471746-4	chr16	12471633	12471833	+	927.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-339657.0	NR_040507	75493.0	Mm.396146	NR_040507	ENSMUSG00000101565	1700003L19Rik	-	RIKEN cDNA 1700003L19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-89089069-4	chr15	89088973	89089173	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027905)	promoter-TSS (NM_027905)	35.0	NM_027905	223776.0	Mm.44763	NM_027905	ENSMUSG00000035757	Selenoo	1300018J18Rik|Selo	selenoprotein O	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43653405-2	chr4	43653305	43653505	+	925.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_026871)	TTS (NM_026871)	189.0	NM_001290462	433700.0	Mm.331569	NM_001007463	ENSMUSG00000066196	Spag8	MH-SPAG8|SMP-1	sperm associated antigen 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-94811952-4	chr8	94811835	94812035	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011332, exon 3 of 3)	3' UTR (NM_011332, exon 3 of 3)	1482.0	NM_011332	20295.0	Mm.41988	NM_011332	ENSMUSG00000031780	Ccl17	Abcd-2|Scya17|Scya17l|Tarc	chemokine (C-C motif) ligand 17	protein-coding	3.93826362391188	3.34473622919439	4.45118211114242	4.08424631953235	4.41082306752528	4.41714424501612	3.66340359049651	3.85643970098493	0.155647610780238	0.739149593558254	0.998431161219273
Merged-chr2-170144037-4	chr2	170143923	170144123	+	676.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1348.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47869572-2	chr17	47869473	47869673	+	770.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028767, intron 15 of 16)	intron (NM_028767, intron 15 of 16)	-34882.0	NM_001109973	17240.0	Mm.329100	NM_010783	ENSMUSG00000032717	Mdfi	I-mf|I-mfa	MyoD family inhibitor	protein-coding	0.832544228299397	1.62265258154785	0.868167033421071	1.51181803088637	1.88714267897426	1.49293463198585	1.80274752011123	0.857318488570068	1.06326616281148	0.43936817340124	0.909130714404946
Merged-chr19-16419888-2	chr19	16419788	16419988	+	819.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-15779.0	NM_008137	14675.0	Mm.313181	NM_008137	ENSMUSG00000024697	Gna14	AU023208	guanine nucleotide binding protein, alpha 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-54432313-1	chr14	54432213	54432413	+	658.0	f1_c57bl6.idr	intron (NM_008608, intron 1 of 9)	CpG	715.0	NM_008608	17387.0	Mm.280175	NM_008608	ENSMUSG00000000957	Mmp14	AI325305|MMP-X1|MT-MMP-1|MT1-MMP|sabe	matrix metallopeptidase 14 (membrane-inserted)	protein-coding	-0.369797897962361	-0.344101733446184	-0.3522691626209	0.996165078598126	-0.00301308715643075	-0.342291865051051	-0.350447900782898	-0.357592759447331	-2.92429011693005	0.202735054266225	1
Merged-chr2-132701616-3	chr2	132701502	132701702	+	781.150024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028637, intron 2 of 2)	intron (NM_028637, intron 2 of 2)	11004.0	NM_028637	73747.0	Mm.284114	NM_028637	ENSMUSG00000044991	1110034G24Rik	-	RIKEN cDNA 1110034G24 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-23763625-1	chr11	23763525	23763725	+	595.0	f0_balb.idr	intron (NM_009044, intron 1 of 9)	B4A|SINE|B4	7345.0	NM_009044	19696.0	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-122875018-2	chr6	122874918	122875118	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026267, intron 1 of 7)	CpG	461.0	NM_026267	67602.0	Mm.288114	NM_026267	ENSMUSG00000030327	Necap1	1200016B17Rik|AI747569|mFLJ00061	NECAP endocytosis associated 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-56598398-4	chr10	56598302	56598502	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	166421.0	NR_152768	102640560.0	Mm.417249	NR_152768		Gm36595	-	predicted gene, 36595	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-91183356-2	chr10	91183256	91183456	+	660.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-11737.0	NM_001080130	21917.0	Mm.159684	NM_011605	ENSMUSG00000019961	Tmpo	5630400D24Rik|AI195756|AI606875|AW214352|AW547477|LAP2|TP	thymopoietin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-21991524-4	chr10	21991434	21991634	+	999.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161849)	promoter-TSS (NM_001161849)	-689.0	NM_001161849	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	4.30671766019493	4.69884339667777	5.53250039232973	4.47907803371082	3.62857144459426	5.23265291787434	4.7721899320709	4.34778010921624	-0.28809890127859	0.513844795661059	0.9463431014646
Merged-chr17-65884364-2	chr17	65884229	65884429	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009067, intron 1 of 9)	CpG	594.0	NM_001198949	19765.0	Mm.17009	NM_009067	ENSMUSG00000024096	Ralbp1	RLIP76|Rip1	ralA binding protein 1	protein-coding	3.02220409675887	3.29258048605764	3.82474501557465	3.08916999462929	3.37304466408607	3.84165761622756	3.97223738849578	3.20558531043959	0.444211316968047	0.423409591797794	0.900460846988572
Merged-chr11-55013923-2	chr11	55013823	55014023	+	555.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_138556, intron 2 of 24)	intron (NR_138556, intron 2 of 24)	19548.0	NR_138556	11749.0	Mm.265347	NM_013472	ENSMUSG00000018340	Anxa6	AW107198|Anx6|AnxVI|Cabm|Camb	annexin A6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128335921-2	chr2	128335821	128336021	+	616.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_028590, intron 1 of 2)	intron (NR_028590, intron 1 of 2)	93430.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-123564684-4	chr4	123564579	123564779	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199137, intron 1 of 92)	intron (NM_001199137, intron 1 of 92)	-51741.0	NR_105824	102465214.0		NR_105824	ENSMUSG00000099005	Mir6398	Gm27657|mmu-mir-6398	microRNA 6398	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-36265525-3	chr2	36265424	36265624	+	645.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	35098.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-108694009-4	chr8	108693915	108694115	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20629.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126820695-3	chr8	126820588	126820788	+	828.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28332.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-60728749-2	chr18	60728649	60728849	+	782.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001348146, intron 1 of 6)	intron (NM_001348146, intron 1 of 6)	-1183.0	NM_001348103	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-83688149-4	chr12	83688058	83688258	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008943)	promoter-TSS (NM_008943)	6.0	NM_001362271	19164.0	Mm.998	NM_008943	ENSMUSG00000019969	Psen1	Ad3h|PS-1|PS1|S182	presenilin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-93556189-4	chr3	93556061	93556261	+	769.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009112, intron 1 of 2)	intron (NM_009112, intron 1 of 2)	1044.0	NM_009112	20194.0	Mm.1	NM_009112	ENSMUSG00000041959	S100a10	42C|AA409961|AL024248|CAL12|CLP11|Cal1l|p10|p11	S100 calcium binding protein A10 (calpactin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-84115355-2	chr17	84115255	84115455	+	800.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36695.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-113391178-4	chr2	113391083	113391283	+	939.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285458, intron 2 of 16)	intron (NM_001285458, intron 2 of 16)	-49881.0	NM_001285459	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-102316405-4	chr15	102316310	102316510	+	993.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356312, intron 18 of 30)	intron (NM_001356312, intron 18 of 30)	-9706.0	NM_027044	56612.0	Mm.158264	NM_020031	ENSMUSG00000001289	Pfdn5	1190001O17Rik|1700010A06Rik|D15Ertd697e|Eig1|MM-1	prefoldin 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120096746-2	chr8	120096646	120096846	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133967, intron 1 of 7)	intron (NM_133967, intron 1 of 7)	4726.0	NM_133967	102193.0	Mm.240076	NM_133967	ENSMUSG00000031823	Zdhhc7	AL024087|Gramp2	zinc finger, DHHC domain containing 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-112492062-1	chr2	112491962	112492162	+	1000.0	f1_c57bl6.idr	promoter-TSS (NM_028844)	promoter-TSS (NM_028844)	-902.0	NM_028844	74268.0	Mm.315125	NM_028844	ENSMUSG00000003604	Aven	1700013A01Rik|1700056A21Rik|mAven-L|mAven-S	apoptosis, caspase activation inhibitor	protein-coding	-0.744583320681159	-1.08907322251399	-0.785644459993082	-1.107169678969	-1.10976210705869	-1.08671647804793	-1.09748667004409	-1.10684838342435	-2.59718020795451	0.420837302388055	1
Merged-chr1-156540354-3	chr1	156540248	156540448	+	722.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18439.0	NM_009595	11352.0	Mm.329515	NM_009595	ENSMUSG00000026596	Abl2	AA536808|Abll|Arg	v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-9493448-4	chr18	9493357	9493557	+	865.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43303.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-59684229-2	chr1	59684129	59684329	+	805.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018868)	promoter-TSS (NM_018868)	-777.0	NM_018868	55989.0	Mm.220367	NM_018868	ENSMUSG00000026020	Nop58	MSSP|Nol5|SIK|nop5	NOP58 ribonucleoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-16435646-4	chr19	16435530	16435730	+	851.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008137)	promoter-TSS (NM_008137)	-37.0	NM_008137	14675.0	Mm.313181	NM_008137	ENSMUSG00000024697	Gna14	AU023208	guanine nucleotide binding protein, alpha 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-79997306-4	chr7	79997202	79997402	+	807.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27512.0	NM_001145999	209225.0	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-53261442-4	chr18	53261329	53261529	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029394, intron 1 of 6)	intron (NM_029394, intron 1 of 6)	15767.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140963164-3	chr5	140963033	140963233	+	638.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175362, intron 1 of 24)	intron (NM_175362, intron 1 of 24)	37463.0	NM_175362	108723.0	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-5825031-2	chr9	5824931	5825131	+	877.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17B|LTR|ERVK	-343455.0	NM_001357398	71785.0	Mm.390122	NM_027924	ENSMUSG00000032006	Pdgfd	1110003I09Rik	platelet-derived growth factor, D polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-76048277-4	chr5	76048146	76048346	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69818.0	NM_010612	16542.0	Mm.285	NM_010612	ENSMUSG00000062960	Kdr	6130401C07|Flk-1|Flk1|Krd-1|Ly73|VEGFR-2|VEGFR2|orv|sVEGFR-2	kinase insert domain protein receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-48762084-2	chr2	48761984	48762184	+	660.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52025.0	NM_007396	11480.0	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-53764034-1	chr11	53763934	53764134	+	1000.0	f0_balb.idr	promoter-TSS (NR_106131)	promoter-TSS (NR_106131)	-380.0	NR_106131	102465772.0		NR_106131	ENSMUSG00000099153	Mir7671	Gm27802|mmu-mir-7671	microRNA 7671	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-25130413-1	chr17	25130313	25130513	+	649.0	f1_c57bl6.idr	Intergenic	Intergenic	-2978.0	NM_011930	26373.0	Mm.270587	NM_011930	ENSMUSG00000036636	Clcn7	ClC-7|D17Wsu51e	chloride channel, voltage-sensitive 7	protein-coding	1.697997740318	1.86070318778079	0.771647416350265	0.967262977220302	1.45038815830793	1.53803963830161	0.775100984124322	0.761574805490969	-0.800587637982043	0.579396838104233	0.965985075107763
Merged-chr17-85090600-4	chr17	85090494	85090694	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163624)	promoter-TSS (NM_001163624)	-106.0	NM_028576	73582.0	Mm.260753	NM_028576	ENSMUSG00000071037	Camkmt	1700106N22Rik|AI480743|AV099781|CLNMT|CaM KMT	calmodulin-lysine N-methyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101909827-2	chr7	101909727	101909927	+	891.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025605, intron 2 of 4)	intron (NM_025605, intron 2 of 4)	-3468.0	NM_001081679	791260.0	Mm.475469	NM_001081679	ENSMUSG00000078630	Tomt	Comt2|F930017I19Rik	transmembrane O-methyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-36024782-1	chr8	36024682	36024882	+	751.0	f1_c57bl6.idr	Intergenic	RMER13B|LTR|ERVK	-70046.0	NM_172911	244418.0	Mm.244971	NM_172911	ENSMUSG00000050271	Prag1	9830148H23|D8Ertd82e|NACK|Sgk223|mFLJ00269	PEAK1 related kinase activating pseudokinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-45031360-1	chr2	45031260	45031460	+	889.5	f0_balb.idr	intron (NM_001355291, intron 2 of 9)	intron (NM_001355291, intron 2 of 9)	-8183.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-38516600-2	chr15	38516500	38516700	+	774.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301688, intron 1 of 11)	intron (NM_001301688, intron 1 of 11)	2666.0	NM_001301688	54375.0	Mm.250214	NM_018745	ENSMUSG00000037458	Azin1	1700085L02Rik|AZI|Oazi|Oazin	antizyme inhibitor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-64373885-4	chr13	64373764	64373964	+	981.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3344.0	NM_009984	13039.0	Mm.930	NM_009984	ENSMUSG00000021477	Ctsl	1190035F06Rik|CatL|Ctsl1|MEP|fs|nkt	cathepsin L	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-74804278-2	chr12	74804176	74804376	+	948.5	f0_balb.idr|f1_balb.idr	Intergenic	GSAT_MM|Satellite|Satellite	373056.0	NM_172805	238271.0	Mm.44465	NM_172805	ENSMUSG00000034402	Kcnh5	Eag2	potassium voltage-gated channel, subfamily H (eag-related), member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123228237-4	chr5	123228132	123228332	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026000)	promoter-TSS (NM_026000)	42.0	NM_026000	67151.0	Mm.278997	NM_026000	ENSMUSG00000029440	Psmd9	1500011J20Rik|2610202L11Rik|Bridge-1|P27	proteasome (prosome, macropain) 26S subunit, non-ATPase, 9	protein-coding	4.03763979461618	2.96275662596405	2.38657677335667	3.5159168506548	3.55360443515076	3.23091926448582	1.96244345333136	4.17242956877374	0.116747474575631	0.86838875390259	0.998431161219273
Merged-chr11-121720538-4	chr11	121720439	121720639	+	818.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18112.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-12389206-2	chr13	12389106	12389306	+	744.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-6169.0	NM_144835	217995.0	Mm.171186	NM_144835	ENSMUSG00000050244	Heatr1	AA517551|B130016L12Rik|BC019693	HEAT repeat containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132216894-2	chr4	132216794	132216994	+	897.6666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	3695.0	NR_036572	664903.0	Mm.425212	NR_036572		Rps15a-ps4	Gm13253|Lethe	ribosomal protein S15A, pseudogene 4	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-51756009-4	chr6	51755932	51756132	+	853.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	210739.0	NM_001361577	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-177206505-4	chr2	177206397	177206597	+	990.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	205541.0	NM_001362250	628147.0	Mm.374080	NM_001362250		Gm2004	100039000	predicted gene 2004	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-112865005-4	chr12	112864886	112865086	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4070.0	NM_019925	56696.0	Mm.20455	NM_019925	ENSMUSG00000021298	Gpr132	G2a	G protein-coupled receptor 132	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-86074313-3	chr10	86074209	86074409	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013722, intron 8 of 13)	intron (NM_013722, intron 8 of 13)	-21545.0	NR_038024	78170.0	Mm.444790	NR_038024	ENSMUSG00000112493	4930486F22Rik	-	RIKEN cDNA 4930486F22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-59312141-1	chr3	59312041	59312241	+	609.0	f0_balb.idr	intron (NM_177855, intron 42 of 43)	intron (NM_177855, intron 42 of 43)	32115.0	NM_001162884	242050.0	Mm.228086	NM_001162884	ENSMUSG00000036334	Igsf10	6530405F15Rik|9030224D03|AA409708|AA536958|AI414626|Adlican2|CMF608	immunoglobulin superfamily, member 10	protein-coding	0.39493549892528	0.264620722867403	0.257195671093115	1.00489294313305	0.649601325156214	0.266288670137404	0.258836990951985	1.01380699504529	0.349099528141238	0.855426628232809	1
Merged-chr17-62542907-2	chr17	62542807	62543007	+	809.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3B|LINE|L1	338410.0	NM_207654	13640.0	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-121010596-2	chr4	121010496	121010696	+	673.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133716, intron 1 of 9)	intron (NM_133716, intron 1 of 9)	6651.0	NM_133716	69780.0	Mm.271819	NM_133716	ENSMUSG00000032870	Smap2	1810031K02Rik|AA408614|Smap1l	small ArfGAP 2	protein-coding	-0.886231420848066	-0.670091393451716	-0.879340732491321	-0.881927982876351	-0.885590601908523	-0.869250457804624	-0.162299495599593	-0.881475719925823	2.17378321166402	0.467635083069271	1
Merged-chr9-66980645-4	chr9	66980541	66980741	+	752.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-5157.0	NM_030717	80907.0	Mm.157882	NM_030717	ENSMUSG00000032370	Lactb	LACT-1|Lact1|Mrpl56	lactamase, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5729964-5	chr17	5729842	5730042	+	933.320007	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 7 of 8)	intron (NM_146073, intron 7 of 8)	-68715.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-17624617-4	chr17	17624509	17624709	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172827)	promoter-TSS (NM_172827)	-120.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-86493596-4	chr6	86493484	86493684	+	999.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	-5357.0	NR_040292	381792.0	Mm.333223	NR_040292	ENSMUSG00000101655	2310040G24Rik	-	RIKEN cDNA 2310040G24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19421464-4	chr7	19421352	19421552	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_073014)	promoter-TSS (NR_073014)	-35.0	NR_073015	100503495.0	Mm.410762	NR_073014	ENSMUSG00000040705	A930016O22Rik	-	RIKEN cDNA A930016O22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-33323751-2	chr14	33323651	33323851	+	600.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153800, intron 4 of 10)	intron (NM_153800, intron 4 of 10)	87273.0	NM_001310452	26419.0	Mm.21495	NM_016700	ENSMUSG00000021936	Mapk8	AI849689|JNK|JNK1|Prkm8|SAPK1	mitogen-activated protein kinase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122022456-3	chr8	122022350	122022550	+	936.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016812, intron 12 of 13)	intron (NM_016812, intron 12 of 13)	44426.0	NR_106096	102466915.0		NR_106096	ENSMUSG00000099140	Mir7237	Gm27482|mmu-mir-7237	microRNA 7237	ncRNA	0.343663919971416	0.18897049149695	0.880977352575745	0.170166197408398	0.349452577742713	0.191314435331703	1.54018393441236	0.171621825501105	1.3480801780269	0.469293829939991	1
Merged-chr4-86712979-4	chr4	86712882	86713082	+	724.0625	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35573.0	NM_184088	329877.0	Mm.273718	NM_184088	ENSMUSG00000038024	Dennd4c	1700065A05Rik|AA420392	DENN/MADD domain containing 4C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-121613773-4	chr10	121613691	121613891	+	914.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359618, intron 6 of 24)	intron (NM_001359618, intron 6 of 24)	12541.0	NM_001081056	73192.0	Mm.25042	NM_001081056	ENSMUSG00000034667	Xpot	1110004L07Rik|3110065H13Rik|AI452076|C79645|EXPORTIN-T	exportin, tRNA (nuclear export receptor for tRNAs)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167771218-2	chr2	167771118	167771318	+	607.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	80041.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-35051182-4	chr12	35051095	35051295	+	787.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001014973, intron 1 of 25)	intron (NM_001014973, intron 1 of 25)	4006.0	NM_001014973	217463.0	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	3.91945715505381	4.68300271373514	3.65512495916927	3.68754663229959	3.24751401367553	2.04636721304368	2.60006033129166	2.66371882224225	-2.04608608484654	0.000745054678452116	0.0153067911508022
Merged-chr14-121931161-4	chr14	121931058	121931258	+	880.270874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026861, intron 4 of 8)	MLT1F1|LTR|ERVL-MaLR	-15384.0	NM_182806	110168.0	Mm.37405	NM_182806	ENSMUSG00000050350	Gpr18	-	G protein-coupled receptor 18	protein-coding	1.11770582281406	0.655972027723027	0.646780185734647	1.28828610735108	0.912196106990688	0.860022235935281	1.24307009992834	1.08528746823005	0.317245571321252	0.830385704161699	1
Merged-chr5-66102985-4	chr5	66102879	66103079	+	975.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127382, intron 2 of 7)	B4|SINE|B4	-4800.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32721293-2	chr2	32721193	32721393	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013781, intron 1 of 11)	intron (NM_013781, intron 1 of 11)	238.0	NM_013781	27387.0	Mm.9593	NM_013781	ENSMUSG00000059013	Sh2d3c	Chat|Nsp3|Shep1	SH2 domain containing 3C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16900824-2	chr7	16900724	16900924	+	575.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5666.0	NM_008967	19222.0	Mm.287572	NM_008967	ENSMUSG00000043017	Ptgir	IP|PGI2	prostaglandin I receptor (IP)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-76467137-4	chr14	76467028	76467228	+	901.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207652, intron 1 of 2)	intron (NM_207652, intron 1 of 2)	-21308.0	NM_001177751	21807.0	Mm.153272	NM_009366	ENSMUSG00000022010	Tsc22d1	AA589566|AW105905|Egr5|TSC-22|Tgfb1i4|Tsc|Tsc22	TSC22 domain family, member 1	protein-coding	2.54451315283237	2.968077340836	3.15636008500405	3.15065050281301	2.94207790291908	2.59452342712939	2.77802946879793	3.31144917604677	-0.063029781489061	0.923453552425824	0.998431161219273
Merged-chr3-144628876-4	chr3	144628752	144628952	+	903.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58425.0	NM_053102	93684.0	Mm.29812	NM_053102	ENSMUSG00000037072	Selenof	9430015P09Rik|Sep15	selenoprotein F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-170162005-4	chr1	170161907	170162107	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133806, intron 2 of 10)	intron (NM_133806, intron 2 of 10)	12957.0	NM_133806	107652.0	Mm.27969	NM_133806	ENSMUSG00000026670	Uap1	AA420407|AA437972|AGX-1|AGX-2|AGX1|AgX|ESTM38|SPAG2	UDP-N-acetylglucosamine pyrophosphorylase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-60769102-2	chr16	60769002	60769202	+	564.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	-163571.0	NM_007938	13840.0	Mm.455790	NM_007938	ENSMUSG00000055540	Epha6	Ehk2|Hek12|m-ehk2	Eph receptor A6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-83442572-4	chr8	83442483	83442683	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019708)	promoter-TSS (NM_019708)	79.0	NM_001285992	56367.0	Mm.246911	NM_019708	ENSMUSG00000063253	Scoc	0610011C06Rik|2810002J11Rik|AA415030|SCOCO	short coiled-coil protein	protein-coding	5.0433736294623	4.69295439899492	5.28629547338695	4.98819218431056	5.51774800961943	5.02538508823393	5.58211721046484	5.72088613651077	0.544829795543485	0.0707650517076458	0.400364236272399
Merged-chr14-47395848-3	chr14	47395744	47395944	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_144553, exon 14 of 19)	exon (NM_144553, exon 14 of 19)	21984.0	NM_001145953	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	2.92379695211184	2.42979391284476	1.53204903635839	1.46560329222594	4.19367114327114	4.98354832903028	4.0327868289779	4.6775393174688	3.48993316461527	1.05778323932138e-07	9.24122570779949e-06
Merged-chr9-55392524-3	chr9	55392430	55392630	+	782.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172923, intron 3 of 10)	intron (NM_172923, intron 3 of 10)	65617.0	NM_001357568	244886.0	Mm.24361	NM_172923	ENSMUSG00000032313	Tmem266	9630029F15|AI118078|HVRP1	transmembrane protein 266	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-123535490-2	chr4	123535390	123535590	+	819.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199137, intron 5 of 92)	intron (NM_001199137, intron 5 of 92)	-80930.0	NR_105824	102465214.0		NR_105824	ENSMUSG00000099005	Mir6398	Gm27657|mmu-mir-6398	microRNA 6398	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-68467744-1	chr11	68467644	68467844	+	899.0	f0_balb.idr	intron (NM_177320, intron 1 of 18)	intron (NM_177320, intron 1 of 18)	-35275.0	NM_001004435	104709.0	Mm.234573	NM_001004435	ENSMUSG00000046207	Pik3r6	BB220380|p84|p84 PIKAP|p87(PIKAP)|p87PIKAP	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-170703145-3	chr1	170703062	170703262	+	774.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58630.0	NM_177068	320078.0	Mm.287131	NM_177068	ENSMUSG00000038463	Olfml2b	1110018N05Rik|4832415H08Rik|AI467542	olfactomedin-like 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-23249152-2	chr8	23249049	23249249	+	595.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_020585, intron 2 of 4)	intron (NM_020585, intron 2 of 4)	7931.0	NM_020585	57437.0	Mm.196269	NM_020585	ENSMUSG00000015341	Golga7	AB041568|C130038N16Rik|GCP16|GOLGA3AP1|HSPC041|R75586	golgi autoantigen, golgin subfamily a, 7	protein-coding	0.617555318471751	0.471307578322342	1.71848609111585	0.830485689879062	0.623649311455309	0.474090698326902	1.39381935396196	0.450695109388024	-0.858766683804672	0.597387638721368	0.971902489067841
Merged-chr9-32485506-3	chr9	32485396	32485596	+	880.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008026, intron 1 of 8)	MLT1G1|LTR|ERVL-MaLR	55956.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-125558831-4	chr8	125558730	125558930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357372, intron 1 of 21)	intron (NM_001357372, intron 1 of 21)	11033.0	NM_001357372	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	3.63040926592213	4.05080838929488	3.98473697296475	3.53698849274247	3.52967727448205	3.2942752352008	3.88608716360433	3.89818549169873	-0.19729014025547	0.687539549627352	0.996533206832645
Merged-chr4-119738834-4	chr4	119738729	119738929	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-75849.0	NM_010657	16656.0	Mm.302758	NM_010657	ENSMUSG00000028634	Hivep3	2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3	human immunodeficiency virus type I enhancer binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-66128115-1	chr5	66128015	66128215	+	563.0	f1_balb.idr	intron (NM_001127382, intron 2 of 7)	intron (NM_001127382, intron 2 of 7)	22863.0	NM_001291226	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	2.34655214635965	2.63769718544498	1.31781841043707	2.16350090029652	1.812811286348	2.65747784289209	1.78511703396064	2.48768069541717	0.0940196533810897	0.921045549781581	0.998431161219273
Merged-chr17-13014365-2	chr17	13014265	13014465	+	560.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013671, intron 4 of 4)	intron (NM_013671, intron 4 of 4)	6526.0	NM_013671	20656.0	Mm.290876	NM_013671	ENSMUSG00000006818	Sod2	MnSOD|Sod-2	superoxide dismutase 2, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-67579296-4	chr11	67579182	67579382	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008088, intron 1 of 13)	intron (NM_008088, intron 1 of 13)	-7218.0	NM_001109657	14457.0	Mm.40338	NM_008088	ENSMUSG00000033066	Gas7	AW124766|B230343A10Rik|Gas7-cb	growth arrest specific 7	protein-coding	4.03139243854196	4.05145641195744	4.4534171955895	3.94524252185187	4.34026924793341	3.63820071746825	5.00040774042397	4.09044889213149	0.304706446320895	0.496860235959473	0.936897994490085
Merged-chr9-101039100-2	chr9	101039000	101039200	+	638.3000490000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4216.0	NM_025835	66904.0	Mm.335385	NM_025835	ENSMUSG00000032527	Pccb	1300012P06Rik|AI314687|R74805	propionyl Coenzyme A carboxylase, beta polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-61694074-2	chr10	61693974	61694174	+	554.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001358488)	TTS (NM_001358488)	-1440.0	NM_001272090	71767.0	Mm.71514	NM_027912	ENSMUSG00000020087	Tysnd1	1300019N10Rik	trypsin domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-104383307-2	chr8	104383207	104383407	+	586.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153582, intron 1 of 3)	intron (NM_153582, intron 1 of 3)	12500.0	NM_153582	97487.0	Mm.29658	NM_153582	ENSMUSG00000096188	Cmtm4	Cklfsf4|D19397|Gm9853	CKLF-like MARVEL transmembrane domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-3628171-2	chr8	3628071	3628271	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-2626.0	NM_001129803	18545.0	Mm.440882	NM_008790	ENSMUSG00000004630	Pcp2	L7|Pcp-2	Purkinje cell protein 2 (L7)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-183221476-4	chr1	183221378	183221578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026866)	promoter-TSS (NM_026866)	51.0	NM_026866	68897.0	Mm.327216	NM_026866	ENSMUSG00000030768	Disp1	1190008H24Rik|DispA	dispatched RND transporter family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-172346642-2	chr2	172346542	172346742	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025912, intron 1 of 2)	intron (NM_025912, intron 1 of 2)	1065.0	NM_025912	67017.0	Mm.30013	NM_025912	ENSMUSG00000027495	Fam210b	2010011I20Rik|AI430961|AV108736	family with sequence similarity 210, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-92679498-2	chr5	92679398	92679598	+	574.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3937.0	NM_015756	27428.0	Mm.46014	NM_015756	ENSMUSG00000029381	Shroom3	AL022960|D5Ertd287e|Shrm|Shrm3	shroom family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-61664415-3	chr8	61664339	61664539	+	628.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293772, intron 10 of 21)	intron (NM_001293772, intron 10 of 21)	-73270.0	NM_001293774	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84650554-2	chr8	84650454	84650654	+	613.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12298.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	-0.111565448257343	-0.545227518730844	-0.548459408470454	-0.550941108567326	-0.554430428142207	-0.544496634763374	-0.377771860892882	-0.144980882621382	0.29357657970118	0.912691822761524	1
Merged-chr11-106613980-4	chr11	106613872	106614072	+	980.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1042.0	NM_198292	21763.0	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-10996701-4	chr16	10996588	10996788	+	983.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-3567.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-87387454-4	chr12	87387347	87387547	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011479, intron 1 of 11)	intron (NM_011479, intron 1 of 11)	908.0	NM_011479	20773.0	Mm.565	NM_011479	ENSMUSG00000021036	Sptlc2	LCB2|LCB2a|Spt2	serine palmitoyltransferase, long chain base subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-40673556-4	chr19	40673518	40673718	+	809.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009848, intron 1 of 9)	L2a|LINE|L2	13848.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-62163158-2	chr18	62163058	62163258	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16823.0	NM_007420	11555.0	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-96322833-3	chr9	96322737	96322937	+	850.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001184710, exon 10 of 10)	3' UTR (NM_001184710, exon 10 of 10)	40878.0	NM_001357213	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-15266607-1	chr4	15266507	15266707	+	610.0	f0_balb.idr	exon (NM_181401, exon 1 of 3)	exon (NM_181401, exon 1 of 3)	787.0	NM_181401	100201.0	Mm.394111	NM_181401	ENSMUSG00000043252	Tmem64	9630015D15Rik|AI790744|AV300874	transmembrane protein 64	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55688780-4	chr19	55688683	55688883	+	923.7333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045318, intron 2 of 3)	intron (NR_045318, intron 2 of 3)	13421.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	4.26000902736225	3.70020840001516	3.09122363863784	3.21249636779689	4.06018048527115	2.61912844483618	4.07133716570459	3.32449474818733	-0.00887704320780439	0.987990594376296	0.998431161219273
Merged-chr1-166168755-2	chr1	166168655	166168855	+	608.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	38534.0	NM_001360925	59290.0	Mm.46357	NM_021610	ENSMUSG00000000544	Gpa33	2010310L10Rik|2210401D16Rik|BB116197|mA33	glycoprotein A33 (transmembrane)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-113654238-3	chr2	113654146	113654346	+	957.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285459, intron 13 of 16)	intron (NM_001285459, intron 13 of 16)	-30844.0	NM_001287818	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	0.889436895134757	1.63544447110051	0.942218107242671	1.52443341283101	1.11467045289085	2.60748839802172	1.9890265984204	1.80503602984956	2.09466159664893	0.0833141157817596	0.442041315366842
Merged-chr3-89411977-4	chr3	89411881	89412081	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001362375)	promoter-TSS (NM_001362375)	-100.0	NR_155545	319945.0	Mm.258142	NM_177041	ENSMUSG00000042642	Flad1	A930017E24Rik|Pp591	flavin adenine dinucleotide synthetase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-21994304-2	chr14	21994204	21994404	+	775.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4703.0	NM_145459	218820.0	Mm.292401	NM_145459	ENSMUSG00000039081	Zfp503	AI181838|B830002A16Rik|Nolz-1|Nolz1|Znf503	zinc finger protein 503	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-103443720-4	chr12	103443559	103443759	+	974.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001281830)	promoter-TSS (NM_001281830)	21.0	NM_029803	76933.0	Mm.271275	NM_029803	ENSMUSG00000079017	Ifi27l2a	2310061N23Rik|Ifi27|Isg12|Isg12(b1)	interferon, alpha-inducible protein 27 like 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-53393822-2	chr19	53393722	53393922	+	717.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-3188.0	NM_172429	76479.0	Mm.313687	NM_172429	ENSMUSG00000025024	Smndc1	-	survival motor neuron domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-132115246-2	chr2	132115146	132115346	+	890.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355430, intron 1 of 15)	intron (NM_001355430, intron 1 of 15)	29862.0	NM_001355431	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-37606415-2	chr13	37606315	37606515	+	941.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	-219623.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-35214952-4	chr2	35214843	35215043	+	924.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13823.0	NM_026697	68365.0	Mm.198264	NM_026697	ENSMUSG00000026878	Rab14	0610030G24Rik|2810475J17Rik|A830021G03Rik|AI314285|AI649155|D030017L14Rik	RAB14, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-157407786-4	chr2	157407675	157407875	+	927.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16518.0	NM_009271	20779.0	Mm.22845	NM_009271	ENSMUSG00000027646	Src	AW259666|pp60c-src	Rous sarcoma oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-40663921-4	chr19	40663802	40664002	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009848, intron 1 of 9)	intron (NM_009848, intron 1 of 9)	4132.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	4.47441069566881	4.03480706814279	3.06005678488548	3.98545432948099	4.03043996571647	3.9153155679371	3.21265699015928	4.26761416504806	-0.103096064252533	0.83982839337873	0.998431161219273
Merged-chr19-6840071-2	chr19	6839971	6840171	+	640.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019924, intron 2 of 17)	intron (NM_019924, intron 2 of 17)	556.0	NM_019924	56613.0	Mm.20914	NM_019924	ENSMUSG00000024952	Rps6ka4	1110069D02Rik|90kDa|AI848992|Msk2|mMSK2	ribosomal protein S6 kinase, polypeptide 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-89628210-4	chr6	89628049	89628249	+	876.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15839.0	NM_001178060	232223.0	Mm.229332	NM_153162	ENSMUSG00000000811	Txnrd3	AI196535|TGR|TR2	thioredoxin reductase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-76255328-1	chr13	76255228	76255428	+	592.0	f0_balb.idr	Intergenic	Intergenic	-129633.0	NM_030174	78771.0	Mm.316249	NM_030174	ENSMUSG00000021596	Mctp1	2810465F10Rik	multiple C2 domains, transmembrane 1	protein-coding	1.6294898055619	3.09007523193383	2.32322141536467	2.51550132967234	3.11827064759076	2.42316446101896	3.16790026431356	2.40602397074187	0.671964820030962	0.39867614590208	0.88490194784979
Merged-chr1-53743189-3	chr1	53743096	53743296	+	872.5833130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36412.0	NM_001252070	627872.0	Mm.184692	NM_001252070	ENSMUSG00000096141	Dnah7a	Dnahc7|Dnahc7a|Gm992	dynein, axonemal, heavy chain 7A	protein-coding	0.0423557716821475	-0.199322738163936	-0.203613542575357	-0.0496348635160961	0.0486499490891062	-0.198353628458164	0.453050218728721	-0.206338551652198	1.421753883194	0.529997448852565	1
Merged-chr14-100224386-4	chr14	100224285	100224485	+	978.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74589.0	NM_010636	16597.0	Mm.396499	NM_010636	ENSMUSG00000072294	Klf12	2700063E05Rik|AI225908|AI315654|AP-2rep|B130052C06Rik|D530033K05Rik	Kruppel-like factor 12	protein-coding	2.52569464122456	3.30582934659933	3.34381490284904	2.65465705493333	2.54535887171985	2.95839990647407	2.62605945058157	2.96952278622961	-0.421981771057968	0.534675300752184	0.95286627222167
Merged-chr9-65629752-6	chr9	65629657	65629857	+	733.763916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028030)	promoter-TSS (NM_028030)	-825.0	NM_028030	71973.0	Mm.29148	NM_028030	ENSMUSG00000032387	Rbpms2	2400008B06Rik|AI316523	RNA binding protein with multiple splicing 2	protein-coding	1.0170701200816	0.590404036323134	0.747209867480809	1.25008928597365	0.705015666115535	0.591947240390555	1.1320513645972	0.867981581407433	-0.505049658566015	0.745194981625815	1
Merged-chr13-45029757-2	chr13	45029657	45029857	+	667.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-27661.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-61083853-3	chr14	61083762	61083962	+	910.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37007.0	NM_013869	29820.0	Mm.281356	NM_013869	ENSMUSG00000060548	Tnfrsf19	AL023044|AW123854|TAJ|TAJ-ALPHA|TRADE|Troy	tumor necrosis factor receptor superfamily, member 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-38603201-2	chr16	38603101	38603301	+	719.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_020260, exon 12 of 12)	exon (NM_020260, exon 12 of 12)	40387.0	NM_026407	67846.0	Mm.310476	NM_026407	ENSMUSG00000002845	Tmem39a	2610033C09Rik	transmembrane protein 39a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4000757-2	chr19	4000657	4000857	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_025529, exon 1 of 4)	exon (NM_025529, exon 1 of 4)	177.0	NM_025529	66387.0	Mm.259222	NM_025529	ENSMUSG00000110949	Nudt8	2310039H17Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-34767931-2	chr2	34767831	34768031	+	769.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-4159.0	NM_001163434	14828.0	Mm.330160	NM_022310	ENSMUSG00000026864	Hspa5	AL022860|AU019543|Bip|D2Wsu141e|D2Wsu17e|Grp78|Hsce70|SEZ-7|Sez7|baffled|mBiP	heat shock protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125565445-1	chr6	125565345	125565545	+	732.0	f1_c57bl6.idr	intron (NM_011708, intron 3 of 51)	intron (NM_011708, intron 3 of 51)	12497.0	NM_011708	22371.0	Mm.22339	NM_011708	ENSMUSG00000001930	Vwf	6820430P06Rik|AI551257|B130011O06Rik|C630030D09|F8VWF|VWD	Von Willebrand factor	protein-coding	-1.84403296077046	-1.66801647714807	-1.8227092284551	-1.83030244822578	-1.84188716906724	-1.81146212923676	-1.67516776559419	-1.82894326551725	0.037684011990387	0.991491645451152	1
Merged-chr13-73490132-4	chr13	73490035	73490235	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145376, intron 3 of 13)	MTD|LTR|ERVL-MaLR	22752.0	NM_145376	210992.0	Mm.284649	NM_145376	ENSMUSG00000021608	Lpcat1	2900035H07Rik|Aytl2|BB137372|BC005662|C87117|LPCAT|rd11	lysophosphatidylcholine acyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-93445530-2	chr2	93445408	93445608	+	829.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001136055, intron 1 of 9)	intron (NM_001136055, intron 1 of 9)	7164.0	NM_001271462	12521.0	Mm.4261	NM_007656	ENSMUSG00000027215	Cd82	AA682076|AL023070|C33|IA4|Kai1|Tspan27	CD82 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-84405380-3	chr10	84405307	84405507	+	684.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004363, intron 2 of 6)	intron (NM_001004363, intron 2 of 6)	35064.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-60210537-4	chr2	60210433	60210633	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020575, intron 1 of 9)	intron (NM_020575, intron 1 of 9)	597.0	NM_020575	57438.0	Mm.260635	NM_020575	ENSMUSG00000026977	March7	Axo|Axot|Gtrgeo17	membrane-associated ring finger (C3HC4) 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-58225577-2	chr11	58225477	58225677	+	927.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10600.0	NM_019440	54396.0	Mm.458517	NM_019440	ENSMUSG00000069874	Irgm2	AI481100|GTPI|Ifggd2|Iigp2	immunity-related GTPase family M member 2	protein-coding	0.122530764687238	0.49868736584978	0.464475656296991	0.437725230459033	0.926965770777691	0.142659077558262	0.136501011463229	0.131238836844509	0.083264743017848	0.967072142058562	1
Merged-chr17-45759042-4	chr17	45758953	45759153	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152153, intron 2 of 4)	intron (NR_152153, intron 2 of 4)	24547.0	NR_152153	433111.0	Mm.213441	NR_152153	ENSMUSG00000097727	F630040K05Rik	-	RIKEN cDNA F630040K05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-45158322-4	chr16	45158212	45158412	+	978.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026402)	promoter-TSS (NM_026402)	361.0	NM_001356453	74102.0	Mm.264984	NM_028756	ENSMUSG00000022664	Slc35a5	1010001J06Rik|AU021179|BB097433|D16Ertd450e|D730043G07Rik	solute carrier family 35, member A5	protein-coding	1.78232058530079	2.26653999704661	2.58687732120052	1.52576248682361	2.23932882073278	1.82190745407625	2.20805379940961	2.35154540589007	0.151136702808528	0.869724347340934	0.998431161219273
Merged-chr17-36844758-2	chr17	36844639	36844839	+	647.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025599, intron 2 of 9)	L2b|LINE|L2	7593.0	NM_001286726	22670.0	Mm.34587	NM_030698	ENSMUSG00000024457	Trim26	AI462198|Zfp173|Zfp1736	tripartite motif-containing 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-21747961-4	chr14	21747850	21748050	+	896.7333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001007268, intron 1 of 7)	intron (NM_001007268, intron 1 of 7)	672.0	NM_001007268	27389.0	Mm.390674	NM_013849	ENSMUSG00000021768	Dusp13	DUSP13A|DUSP13B|Gm1203|LMW-DSP6|MDSP|TMDP|TS-DSP6	dual specificity phosphatase 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19329648-2	chr7	19329548	19329748	+	619.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15423.0	NM_001127324	13870.0	Mm.280913	NM_007948	ENSMUSG00000003549	Ercc1	Ercc-1	excision repair cross-complementing rodent repair deficiency, complementation group 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-102975436-2	chr2	102975336	102975536	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73771.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46987857-2	chr19	46987757	46987957	+	802.75	f0_c57.idr|f1_c57bl6.idr	intron (NM_001164363, intron 1 of 17)	intron (NM_001164363, intron 1 of 17)	-18290.0	NM_001164365	76952.0	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	4.25646242699669	3.32312577603959	3.37581469325574	5.20475464876274	1.0235950545879	1.26508252544754	1.19370710822493	1.1277780146125	-7.34667424903302	3.1239988280422e-10	5.85652155294536e-08
Merged-chr4-73125166-2	chr4	73125066	73125266	+	813.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2A|LINE|L1	-272532.0	NM_001199270	353204.0	Mm.317892	NM_001199270	ENSMUSG00000059343	Aldoart1	4921524E03Rik|Aldo1-ps|Aldo1-ps2|Aldoa-ps2	aldolase 1 A, retrogene 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43818993-3	chr4	43818904	43819104	+	888.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE-int|LTR|ERVL-MaLR	2429.0	NM_019474	29846.0	Mm.377121	NM_019474	ENSMUSG00000110970	Olfr156	MOR262-6|OR37B|Olfr37b|mOR37b	olfactory receptor 156	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-116093079-2	chr9	116092979	116093179	+	890.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029575, intron 5 of 6)	intron (NM_029575, intron 5 of 6)	82284.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-116735516-4	chr6	116735417	116735617	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER44B|DNA|TcMar-Tigger	-18759.0	NM_178768	319776.0	Mm.133120	NM_178768	ENSMUSG00000048108	Tmem72	C230095G01Rik	transmembrane protein 72	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171713582-4	chr1	171713439	171713639	+	996.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31547.0	NM_001360767	12506.0	Mm.1738	NM_007649	ENSMUSG00000015355	Cd48	AI449234|AW610730|BCM1|BLAST|BLAST-1|BLAST1|Bcm-1|MEM-102|SLAMF2|Sgp-60	CD48 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-58567289-4	chr2	58567186	58567386	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001110205)	promoter-TSS (NM_001110205)	-48.0	NM_001289660	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-119538186-2	chr4	119538086	119538286	+	554.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001004178, intron 1 of 3)	intron (NM_001004178, intron 1 of 3)	583.0	NM_001004178	433752.0	Mm.425205	NM_001004178	ENSMUSG00000087385	Frg2f1	AA415398	FSHD region gene 2 family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132513619-4	chr4	132513537	132513737	+	987.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3181.0	NM_144907	230784.0	Mm.23608	NM_144907	ENSMUSG00000028893	Sesn2	HI95|SEST2|Ses2	sestrin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-114293573-4	chr6	114293472	114293672	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178703, intron 1 of 15)	intron (NM_178703, intron 1 of 15)	10937.0	NM_178703	232333.0	Mm.5260	NM_178703	ENSMUSG00000030310	Slc6a1	A730043E01|GABATHG|GABATR|GAT-1|Gabt|Gabt1|Gat1|XT-1|Xtrp1	solute carrier family 6 (neurotransmitter transporter, GABA), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6067166-4	chr19	6067062	6067262	+	939.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001081041)	TTS (NM_001081041)	688.0	NM_028454	73166.0	Mm.489613	NM_028454	ENSMUSG00000024799	Tm7sf2	3110041O18Rik|ANG1|C14SR|Dhcr14	transmembrane 7 superfamily member 2	protein-coding	1.49104764900463	3.4665422917189	1.85971425383815	2.64881839206782	3.32659856043882	1.69963655305044	1.87558267359266	2.9319554527435	0.084122870080943	0.927525476021364	0.998431161219273
Merged-chr10-81649041-4	chr10	81648934	81649134	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001142963)	promoter-TSS (NM_001142963)	-35.0	NM_001142963	100233208.0	Mm.327168	NM_001142963	ENSMUSG00000096856	Gm10778	-	predicted gene 10778	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55775199-2	chr14	55775099	55775299	+	601.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_080435, intron 13 of 25)	intron (NM_080435, intron 13 of 25)	8873.0	NM_080435	104110.0	Mm.287010	NM_080435	ENSMUSG00000022220	Adcy4	mKIAA4004	adenylate cyclase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71538680-2	chr8	71538580	71538780	+	726.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C2|LTR|ERVK	-1243.0	NM_198095	69550.0	Mm.260325	NM_198095	ENSMUSG00000046718	Bst2	2310015I10Rik|Bst-2|C87040|CD317|DAMP-1|GREG	bone marrow stromal cell antigen 2	protein-coding	0.450497288900635	0.327959970987418	0.888458607412872	0.315925475802922	0.879554697233342	0.329490078057367	0.899714812193838	0.483350221904313	0.924042331693867	0.607000289788489	1
Merged-chr5-53662664-4	chr5	53662574	53662774	+	870.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	35914.0	NR_024201	19866.0		NR_024201	ENSMUSG00000089083	Rnu7	-	U7 small nuclear RNA	snRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-64313373-2	chr13	64313277	64313477	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025370)	promoter-TSS (NM_025370)	-667.0	NM_025370	66129.0	Mm.491110	NM_025370	ENSMUSG00000021482	Aaed1	1110018J18Rik|AI849003	AhpC/TSA antioxidant enzyme domain containing 1	protein-coding	1.13760997932704	0.933763279160754	0.609849537895576	0.425428666792654	0.565496457717394	0.80298922113624	0.432917662272952	0.737254703597887	-0.989986700592792	0.54580423542002	1
Merged-chr19-41329108-3	chr19	41329054	41329254	+	833.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 4 of 16)	intron (NM_031376, intron 4 of 16)	55916.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4913858-4	chr16	4913737	4913937	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357062, intron 5 of 17)	B3|SINE|B2	-25274.0	NM_001316715	66911.0	Mm.428698	NM_025839	ENSMUSG00000022516	Nudt16l1	1110001K21Rik|5330437I08Rik|Sdos	nudix (nucleoside diphosphate linked moiety X)-type motif 16-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-23684817-4	chr13	23684708	23684908	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178189)	promoter-TSS (NM_178189)	609.0	NM_023422	68024.0	Mm.261676	NM_023422	ENSMUSG00000018102	Hist1h2bc	2610022J01Rik|H2bfs|R74621	histone cluster 1, H2bc	protein-coding	2.1011730559893	2.48473698202743	2.88838846466919	1.20663943285617	1.39582462944637	1.96159163436067	2.51606583979721	1.83503033930164	-0.745878717986819	0.460253184373944	0.920832323771703
Merged-chr9-83576910-3	chr9	83576841	83577041	+	902.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172507, intron 1 of 3)	intron (NM_172507, intron 1 of 3)	28603.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	-0.795614833823998	-0.786336807896898	-0.789385015939899	-0.791731170198697	-0.417731367456157	-0.784588885553199	-0.788713411686562	-0.258531662084455	3.1330601925306	0.28800364166158	1
Merged-chr12-40569737-1	chr12	40569637	40569837	+	568.0	f0_balb.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	123684.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-63864372-4	chr17	63864281	63864481	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037997, intron 1 of 18)	CpG	400.0	NM_001037997	14158.0	Mm.23039	NM_008000	ENSMUSG00000000127	Fer	AV082135|C330004K01Rik|Fert|Fert2	fer (fms/fps related) protein kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-97811454-2	chr15	97811354	97811554	+	586.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001204279, exon 2 of 24)	exon (NM_001204279, exon 2 of 24)	3409.0	NM_001204281	56233.0	Mm.384027	NM_019572	ENSMUSG00000022475	Hdac7	5830434K02Rik|HD7|HD7a|Hdac7a|mFLJ00062	histone deacetylase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-116468279-4	chr6	116468157	116468357	+	909.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7079.0	NM_009662	11689.0	Mm.41072	NM_009662	ENSMUSG00000025701	Alox5	5-LO|5-LOX|5LO|5LX|AI850497|F730011J02	arachidonate 5-lipoxygenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6910502-1	chr19	6910402	6910602	+	1000.0	f0_balb.idr	promoter-TSS (NM_001358444)	promoter-TSS (NM_001358444)	-396.0	NM_001358444	54683.0	Mm.279782	NM_012021	ENSMUSG00000024953	Prdx5	AOEB166|AOPP|PLP|Pmp20|Prdx6|PrxV	peroxiredoxin 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-5158172-2	chr18	5158072	5158272	+	715.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7559.0	NR_153824	102637682.0	Mm.451914	NR_153824		Gm26682	Gm38715	predicted gene, 26682	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-71485766-7	chr9	71485616	71485816	+	993.464294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164793)	promoter-TSS (NM_001164793)	267.0	NM_178602	28015.0	Mm.21094	NM_178602	ENSMUSG00000032199	Polr2m	AA407243|AA408799|AI303746|AW553238|D9Wsu138e|Grinl1a|mKIAA4185	polymerase (RNA) II (DNA directed) polypeptide M	protein-coding	2.44681180924395	1.14994315035981	1.60246247113085	1.09250227111546	2.0325668885196	1.67423231929671	2.09786167134409	3.08132531358653	1.47488813084665	0.176300627758223	0.646092365840656
Merged-chr3-116486682-2	chr3	116486556	116486756	+	894.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	21519.0	NM_025517	66368.0	Mm.251228	NM_025517	ENSMUSG00000000339	Rtca	2310009A18Rik|AI450277|RPC|Rtcd1	RNA 3'-terminal phosphate cyclase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80903553-2	chr10	80903453	80903653	+	684.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_010722, exon 10 of 12)	exon (NM_010722, exon 10 of 12)	-2584.0	NM_013895	30055.0	Mm.142132	NM_013895	ENSMUSG00000020219	Timm13	D10Ertd378e|Tim9|Timm9	translocase of inner mitochondrial membrane 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-120911683-4	chr14	120911570	120911770	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023579, intron 1 of 25)	CpG	476.0	NM_023579	70572.0	Mm.221452	NM_023579	ENSMUSG00000030662	Ipo5	1110011C18Rik|5730478E03Rik|AA409333|C76941|IMB3|Kpnb3|Ranbp5|imp5	importin 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-86401190-2	chr1	86401090	86401290	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11829.0	NM_001319227	14767.0	Mm.389159	NM_010341	ENSMUSG00000026237	Nmur1	FM-3|Gpr66|NMU-R1|NMU1R|NmU-R	neuromedin U receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-20869356-3	chr9	20869279	20869479	+	834.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175687, exon 2 of 8)	exon (NM_175687, exon 2 of 8)	737.0	NM_175687	319278.0	Mm.249932	NM_175687	ENSMUSG00000038884	A230050P20Rik	RyDEN	RIKEN cDNA A230050P20 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118355339-4	chr11	118355238	118355438	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011594)	promoter-TSS (NM_011594)	73.0	NM_011594	21858.0	Mm.206505	NM_011594	ENSMUSG00000017466	Timp2	D11Bwg1104e|Timp-2	tissue inhibitor of metalloproteinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-16998079-2	chr12	16997979	16998179	+	553.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172574, intron 1 of 6)	intron (NM_172574, intron 1 of 6)	2039.0	NM_172574	217430.0	Mm.379451	NM_172574	ENSMUSG00000045679	Pqlc3	C78076|E030024M05Rik	PQ loop repeat containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-65660303-1	chr3	65660203	65660403	+	605.0	f1_balb.idr	TTS (NR_106200)	TTS (NR_106200)	1015.0	NR_106200	102465905.0		NR_106200	ENSMUSG00000098944	Mir8120	Gm27637|mmu-mir-8120	microRNA 8120	ncRNA	0.976672769093873	1.84173760758452	0.820952367295758	0.807039646093953	1.62172889365964	2.05643418171187	1.05837266297695	1.36202571977264	1.28495926500348	0.334851983387995	0.835388696663455
Merged-chr18-23878325-2	chr18	23878225	23878425	+	829.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162941, intron 6 of 7)	intron (NM_001162941, intron 6 of 7)	74355.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-88035590-3	chr4	88035508	88035708	+	792.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2201.0	NM_027326	70122.0	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-111070804-4	chr9	111070706	111070906	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13288.0	NM_001302376	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4002151-2	chr19	4002051	4002251	+	959.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_025529)	TTS (NM_025529)	-1234.0	NM_021791	60425.0	Mm.266972	NM_021791	ENSMUSG00000024871	Doc2g	D830013O18Rik	double C2, gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-72225262-2	chr1	72225162	72225362	+	621.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C2|LTR|ERVK	-12948.0	NM_001357488	381269.0	Mm.422636	NM_001005423	ENSMUSG00000039395	Mreg	Gm974|Wdt2|dsu	melanoregulin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100157858-2	chr7	100157758	100157958	+	855.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1419.0	NM_026010	67164.0	Mm.46777	NM_026010	ENSMUSG00000030725	Lipt2	2610209A20Rik	lipoyl(octanoyl) transferase 2 (putative)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-94706812-2	chr11	94706712	94706912	+	625.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-2313.0	NM_001007584	432589.0	Mm.342314	NM_001007584	ENSMUSG00000056008	Gm11541	-	predicted gene 11541	protein-coding	-0.120903143144671	-0.241322317411046	-0.24523424864329	0.250018569889401	0.196294067960236	-0.240437711319275	-0.0761720120311336	-0.24771458970397	-0.0656275220629831	0.97729905335335	1
Merged-chr18-67973869-4	chr18	67973779	67973979	+	899.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172631, intron 1 of 5)	intron (NM_172631, intron 1 of 5)	40706.0	NM_172631	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6301131-2	chr19	6301031	6301231	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5326.0	NM_001033342	240505.0	Mm.329622	NM_001033342	ENSMUSG00000024769	Cdc42bpg	BC046418|MRCKgamma	CDC42 binding protein kinase gamma (DMPK-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-132022200-1	chr3	132022100	132022300	+	560.5	f1_c57bl6.idr	Intergenic	Intergenic	-63092.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	0.799804224103582	0.253447264563202	0.750479253561791	0.245146500183759	0.664945133528258	0.254514644656934	0.249775854970661	0.390089997753228	-1.04425003581141	0.599295194735532	1
Merged-chr2-31124367-2	chr2	31124267	31124467	+	738.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355105, intron 1 of 15)	B1_Mur1|SINE|Alu	17641.0	NM_001355106	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-60998806-2	chr9	60998706	60998906	+	760.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18263.0	NR_040767	330956.0	Mm.207985	NR_040767	ENSMUSG00000111290	Gm5122	A430102L10	predicted gene 5122	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-28294176-4	chr5	28294074	28294274	+	819.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23015.0	NM_028234	381626.0	Mm.304075	NM_028234	ENSMUSG00000048271	Rbm33	3200001K10Rik|6430512A10Rik|AA386890|Prr8	RNA binding motif protein 33	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-80747704-2	chr8	80747604	80747804	+	727.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20B3|LTR|ERVK	-8245.0	NM_053124	93762.0	Mm.246803	NM_053124	ENSMUSG00000031715	Smarca5	4933427E24Rik|D030040M08Rik|D330027N15Rik|MommeD4|Snf2h	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-95870202-3	chr13	95870095	95870295	+	845.2777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027711, intron 1 of 35)	intron (NM_027711, intron 1 of 35)	21727.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	4.27749159703174	4.25614975374049	2.98399853221713	2.66687488815991	2.53124257512701	1.40844243245115	1.92620774376942	1.28933678828487	-3.2584591135698	0.000101563337818494	0.00310856358965891
Merged-chr16-58519804-2	chr16	58519704	58519904	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357433, intron 1 of 10)	intron (NM_001357433, intron 1 of 10)	3622.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-62118759-3	chr14	62118667	62118867	+	568.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	174212.0	NM_173419	239133.0	Mm.127330	NM_173419	ENSMUSG00000048281	Dleu7	BC038059	deleted in lymphocytic leukemia, 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-66357042-3	chr7	66356940	66357140	+	632.644409	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146191, intron 2 of 33)	intron (NM_146191, intron 2 of 33)	24684.0	NR_106024	102465640.0		NR_106024	ENSMUSG00000098353	Mir7057	Gm27550|mmu-mir-7057	microRNA 7057	ncRNA	-0.291516896830395	-0.421122601765512	-0.425082745759553	-0.00674022631798266	-0.432439159201535	0.198089167189318	-0.424209841431512	-0.427601102112319	0.376573266694858	0.882488443778131	1
Merged-chr3-130786310-2	chr3	130786210	130786410	+	711.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-55912.0	NM_001005859	68436.0	Mm.140568	NM_026724	ENSMUSG00000062006	Rpl34	1100001I22Rik	ribosomal protein L34	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-45455314-3	chr4	45455209	45455409	+	990.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033306, intron 3 of 5)	intron (NM_001033306, intron 3 of 5)	-46543.0	NM_001009949	230125.0	Mm.260210	NM_001009949	ENSMUSG00000045973	Slc25a51	9130208E07Rik|D130005A03Rik|Gm138|Mcart1	solute carrier family 25, member 51	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-13551981-2	chr8	13551881	13552081	+	775.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080781, intron 7 of 8)	intron (NM_001080781, intron 7 of 8)	10480.0	NM_025601	66501.0	Mm.46136	NM_025601	ENSMUSG00000031452	1700029H14Rik	-	RIKEN cDNA 1700029H14 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-177478775-3	chr1	177478681	177478881	+	776.866638	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	32960.0	NM_013915	30928.0	Mm.330700	NM_013915	ENSMUSG00000063659	Zbtb18	RP58|Zfp238|Znf238.|zfp-238	zinc finger and BTB domain containing 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-9895703-2	chr19	9895562	9895762	+	543.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016692, intron 1 of 17)	intron (NM_016692, intron 1 of 17)	3871.0	NM_016692	16319.0	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90461130-2	chr2	90461030	90461230	+	591.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 7 of 23)	intron (NM_008982, intron 7 of 23)	18044.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-164706780-2	chr2	164706680	164706880	+	707.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	8279.0	NM_030058	78239.0	Mm.160060	NM_030058	ENSMUSG00000017310	Spint4	9230105I15Rik	serine protease inhibitor, Kunitz type 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-120805007-1	chr9	120804907	120805107	+	1000.0	f0_balb.idr	Intergenic	Intergenic	110243.0	NR_040742	76402.0	Mm.436588	NR_040742	ENSMUSG00000100146	1700020M21Rik	-	RIKEN cDNA 1700020M21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-42157903-3	chr19	42157766	42157966	+	867.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10477.0	NM_183195	277010.0	Mm.206250	NM_183195	ENSMUSG00000044345	Marveld1	AI504298|Mrvldc1	MARVEL (membrane-associating) domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-132388918-3	chr1	132388816	132389016	+	764.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178874, intron 1 of 4)	intron (NM_178874, intron 1 of 4)	1402.0	NM_001311107	68875.0	Mm.273785	NM_178874	ENSMUSG00000042066	Tmcc2	1110063G11Rik	transmembrane and coiled-coil domains 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-56722856-4	chr19	56722763	56722963	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007419, exon 1 of 1)	exon (NM_007419, exon 1 of 1)	491.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	1.24953702542296	2.04585108469856	2.49680286857079	2.76909257305364	2.31692407515105	1.64693000052741	2.28492172297275	2.92286382395854	0.241088044984052	0.80157558683813	0.998431161219273
Merged-chr12-5471803-1	chr12	5471703	5471903	+	721.0	f1_c57bl6.idr	Intergenic	Intergenic	95301.0	NR_015579	72669.0	Mm.10434	NM_028318		2810032G03Rik	AI461720	RIKEN cDNA 2810032G03 gene	ncRNA	2.33062895927432	2.24350795621336	2.30162341716715	2.93071162202391	2.14140627628155	1.4287676002571	2.73543374504186	2.11957662099763	-0.653191024056919	0.460191957203351	0.920832323771703
Merged-chr17-57029907-4	chr17	57029874	57030074	+	748.71875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010613, intron 1 of 17)	intron (NM_010613, intron 1 of 17)	1533.0	NM_010613	16549.0	Mm.34296	NM_010613	ENSMUSG00000007670	Khsrp	6330409F21Rik|Fbp2|Fubp2|Ksrp	KH-type splicing regulatory protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-99242288-4	chr9	99242200	99242400	+	784.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1041.0	NM_023873	68121.0	Mm.288739	NM_023873	ENSMUSG00000056267	Cep70	6720484E09Rik|Bite|C030018L16Rik	centrosomal protein 70	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-11487417-2	chr8	11487317	11487517	+	572.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-8918.0	NM_011227	19332.0	Mm.37632	NM_011227	ENSMUSG00000031504	Rab20	AA536966|D8Ertd350e	RAB20, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-96546139-4	chr7	96546039	96546239	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310762, intron 4 of 32)	intron (NM_001310762, intron 4 of 32)	-204175.0	NR_046043	670727.0	Mm.421352	NR_046043	ENSMUSG00000085751	Gm15412	-	predicted gene 15412	ncRNA	5.43039150119183	6.47334083780261	6.18454138851588	5.76819682370465	5.89040236070089	6.27482738405658	6.4548683152986	5.74775190052126	0.116546426795491	0.669904166634663	0.99359666617512
Merged-chr1-60096751-3	chr1	60096681	60096881	+	746.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021312, intron 1 of 12)	MTD|LTR|ERVL-MaLR	1126.0	NM_021312	57750.0	Mm.281079	NM_021312	ENSMUSG00000026019	Wdr12	4933402C23Rik|Ytm1|Ytm1p	WD repeat domain 12	protein-coding	-1.53362919331644	-1.50201671710775	-1.51157659084044	-1.08120497225282	-1.53141005593807	-1.49994505258991	-1.50941244497383	-1.51802371459528	-1.94474658522739	0.577200604274218	1
Merged-chr7-116543080-2	chr7	116542980	116543180	+	679.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38711.0	NM_001360375	53322.0	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-93195080-2	chr13	93194980	93195180	+	649.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2B1|LTR|ERVL	-2663.0	NM_001361537	100715.0	Mm.242865	NM_133905	ENSMUSG00000042167	Papd4	8030446C20Rik|AI649009|GLD-2|Gld2	PAP associated domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-19707164-2	chr14	19707064	19707264	+	856.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44093.0	NM_008695	18074.0	Mm.20348	NM_008695	ENSMUSG00000021806	Nid2	AW547149|Ly111|NID-2|entactin-2|nidogen-2	nidogen 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-37597541-4	chr16	37597434	37597634	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027778, intron 3 of 12)	intron (NR_027778, intron 3 of 12)	17381.0	NM_013547	15233.0	Mm.157442	NM_013547	ENSMUSG00000022821	Hgd	Hgo|aku	homogentisate 1, 2-dioxygenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-101198529-4	chr4	101198441	101198641	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146145, intron 1 of 24)	B1F2|SINE|Alu	66741.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5932417-2	chr17	5932317	5932517	+	555.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8863.0	NM_001113353	20975.0	Mm.236068	NM_011523	ENSMUSG00000023805	Synj2	AI481647|SJ2|mKIAA0348	synaptojanin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-112288597-3	chr4	112288501	112288701	+	901.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001102474, intron 8 of 9)	Lx2|LINE|L1	56356.0	NM_001102474	195564.0	Mm.259652	NM_177578	ENSMUSG00000070868	Skint3	A430090E18Rik|Skint-3	selection and upkeep of intraepithelial T cells 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-56737526-1	chr18	56737426	56737626	+	563.0	f0_balb.idr	intron (NM_010721, intron 5 of 10)	intron (NM_010721, intron 5 of 10)	29713.0	NM_010721	16906.0	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90499711-2	chr2	90499611	90499811	+	589.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	B3A|SINE|B2	-20537.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64818570-3	chr5	64818510	64818710	+	886.2666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008453, intron 2 of 5)	intron (NM_008453, intron 2 of 5)	15087.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-39230878-4	chr6	39230792	39230992	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MEc|LINE|L1	-24119.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-143464494-2	chr7	143464394	143464594	+	565.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3444.0	NM_001161624	12577.0	Mm.168789	NM_009876	ENSMUSG00000037664	Cdkn1c	AL024410|CDKI|Kip2|p57(kip2)|p57Kip2	cyclin-dependent kinase inhibitor 1C (P57)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-107297525-2	chr11	107297425	107297625	+	736.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 4 of 9)	B1_Mm|SINE|Alu	-108144.0	NM_001161329	68979.0	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-23869143-4	chr18	23869053	23869253	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162941, intron 5 of 7)	intron (NM_001162941, intron 5 of 7)	65183.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-92580461-4	chr13	92580369	92580569	+	864.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4237.0	NM_030237	79401.0	Mm.23520	NM_030237	ENSMUSG00000046957	Spz1	1700027M20Rik|AI429130	spermatogenic leucine zipper 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-128344630-5	chr7	128344497	128344697	+	675.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46466.0	NM_145590	233913.0	Mm.220880	NM_145590	ENSMUSG00000030780	BC017158	-	cDNA sequence BC017158	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-92818070-2	chr12	92817970	92818170	+	649.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2B2|LINE|L1	626753.0	NR_126436	75295.0	Mm.243878	NR_126436	ENSMUSG00000113164	4930559C10Rik	-	RIKEN cDNA 4930559C10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-25099747-2	chr19	25099647	25099847	+	595.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028785, intron 13 of 47)	MTD|LTR|ERVL-MaLR	100218.0	NM_028785	76088.0	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-22814240-2	chr2	22814140	22814340	+	869.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019456, intron 1 of 13)	Lx8|LINE|L1	39913.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-57487931-4	chr16	57487826	57488026	+	952.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	-61316.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	-0.662826441749988	-1.00555184936033	-1.01675512286785	-1.01992432642343	-0.654846858003193	-1.00312405325568	-1.01421894731451	-1.01959449741028	0.0418081237259606	0.989738874530268	1
Merged-chr9-20870265-2	chr9	20870165	20870365	+	614.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175687, intron 3 of 7)	intron (NM_175687, intron 3 of 7)	1623.0	NM_175687	319278.0	Mm.249932	NM_175687	ENSMUSG00000038884	A230050P20Rik	RyDEN	RIKEN cDNA A230050P20 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81525238-3	chr10	81525127	81525327	+	860.833374	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1002.0	NM_010304	14676.0	Mm.1546	NM_010304	ENSMUSG00000034792	Gna15	G[a]15|Galpha15	guanine nucleotide binding protein, alpha 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-97705757-4	chr15	97705630	97705830	+	889.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028003)	promoter-TSS (NM_028003)	92.0	NM_028003	71919.0	Mm.12255	NM_028003	ENSMUSG00000022466	Rpap3	2310042P20Rik|D15Ertd682e	RNA polymerase II associated protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-54736275-2	chr3	54736215	54736415	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027148)	promoter-TSS (NM_027148)	776.0	NM_025442	66248.0	Mm.144218	NM_025442	ENSMUSG00000036632	Alg5	1500026A19Rik|2600005J22Rik|AV009521|AV170001|AW545564	asparagine-linked glycosylation 5 (dolichyl-phosphate beta-glucosyltransferase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56814532-4	chr17	56814439	56814639	+	990.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009056, intron 1 of 16)	intron (NM_009056, intron 1 of 16)	16469.0	NM_009056	19725.0	Mm.102	NM_009056	ENSMUSG00000024206	Rfx2	5430432H19Rik	regulatory factor X, 2 (influences HLA class II expression)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-35336398-3	chr2	35336346	35336546	+	869.866699	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013515, intron 1 of 6)	intron (NM_013515, intron 1 of 6)	563.0	NM_013515	13830.0	Mm.295284	NM_013515	ENSMUSG00000026880	Stom	Epb7.2	stomatin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32260082-4	chr2	32259963	32260163	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011675)	promoter-TSS (NM_011675)	42.0	NM_011675	22245.0	Mm.425076	NM_011675	ENSMUSG00000002550	Uck1	URK1|Umpk	uridine-cytidine kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34847458-1	chr17	34847358	34847558	+	829.0	f1_balb.idr	exon (NM_021337, exon 7 of 28)	exon (NM_021337, exon 7 of 28)	-2291.0	NR_105936	102465586.0		NR_105936	ENSMUSG00000098460	Mir6970	Gm27589|mmu-mir-6970	microRNA 6970	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-126820103-4	chr4	126819997	126820197	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001035525, intron 5 of 23)	intron (NM_001035525, intron 5 of 23)	66327.0	NM_001035526	100317.0	Mm.206206	NM_133886	ENSMUSG00000028830	AU040320	A730047D20Rik|AAVR|Kiaa0319l	expressed sequence AU040320	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-110838249-2	chr5	110838149	110838349	+	641.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153348, intron 1 of 5)	intron (NR_153348, intron 1 of 5)	1528.0	NM_001359835	100900.0	Mm.200231	NM_153571	ENSMUSG00000043510	Hscb	AI325508|AW049829|Hsc20	HscB iron-sulfur cluster co-chaperone	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127668946-4	chr10	127668841	127669041	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_045171)	TTS (NR_045171)	1818.0	NR_045171	72243.0	Mm.482902	NR_045171	ENSMUSG00000040195	1700012D01Rik	-	RIKEN cDNA 1700012D01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-38159413-2	chr18	38159305	38159505	+	709.666626	f0_c57.idr|f1_balb.idr	Intergenic	Intergenic	50357.0	NM_029357	75599.0	Mm.36560	NM_029357	ENSMUSG00000051375	Pcdh1	2010005A06Rik|AI585920	protocadherin 1	protein-coding	1.83452494172331	3.45831618436651	3.09956543381467	3.00952712178888	1.63343876377845	3.80983630720928	3.12451919392513	2.15504477335018	-0.0318172484854366	0.969154194653846	0.998431161219273
Merged-chr16-93914042-4	chr16	93913932	93914132	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15535.0	NM_001165925	56173.0	Mm.328716	NM_019500	ENSMUSG00000047109	Cldn14	AI851731	claudin 14	protein-coding	4.56395019689952	5.11891794987936	5.33529789750698	3.95334270796641	4.06300741847235	3.67045215405531	3.0691119902635	2.02502284827796	-1.88379750140338	0.000506296453386231	0.0112770015737525
Merged-chr13-21811781-3	chr13	21811681	21811881	+	889.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175657)	promoter-TSS (NM_175657)	-3.0	NM_175657	319161.0	Mm.261664	NM_175657	ENSMUSG00000069305	Hist1h4n	-	histone cluster 1, H4n	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80830616-4	chr7	80830487	80830687	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27256.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-73444207-2	chr14	73444107	73444307	+	927.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58918.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107587591-4	chr9	107587485	107587685	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025903)	promoter-TSS (NM_025903)	-133.0	NM_025903	15983.0	Mm.215335	NM_025903	ENSMUSG00000010048	Ifrd2	1810034A24Rik|AA470234|AI838527|SKMc15	interferon-related developmental regulator 2	protein-coding	7.24326299507187	7.52651537776479	7.46514559007978	7.17361452695683	7.10189439890102	6.97325342654878	7.09056611712621	7.08206471973371	-0.305064899707025	0.0550873123098742	0.345077048256459
Merged-chr12-112645615-2	chr12	112645515	112645715	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161737, intron 1 of 2)	intron (NM_001161737, intron 1 of 2)	787.0	NM_013929	30954.0	Mm.289812	NM_013929	ENSMUSG00000064326	Siva1	CD27bp|Siva	SIVA1, apoptosis-inducing factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-152724147-3	chr2	152724049	152724249	+	875.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12102.0	NM_010495	15901.0	Mm.444	NM_010495	ENSMUSG00000042745	Id1	AI323524|D2Wsu140e|Idb1|bHLHb24	inhibitor of DNA binding 1	protein-coding	3.04903117706271	3.29005479588505	3.04019371133565	1.57521193029966	1.71155879508079	2.30314919892551	1.63411486576161	2.28947796104199	-1.79859034522453	0.0393180143100861	0.282027223411168
Merged-chr4-34388808-4	chr4	34388738	34388938	+	870.625	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR40|LTR|ERVK	-161777.0	NM_001007589	433693.0	Mm.389532	NM_026019	ENSMUSG00000028291	Akirin2	2700059D21Rik|AA114675|AA522011|AU019887|Akirin-2	akirin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118649209-2	chr9	118649109	118649309	+	924.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 4 of 27)	intron (NM_133721, intron 4 of 27)	42500.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	2.31523538782874	3.01674451249061	2.0565109367985	2.61592944428183	1.76740374455717	1.98536523419333	1.26230286303142	1.6855671387414	-2.13993289542222	0.0231332495531284	0.198151399007427
Merged-chr11-89084837-3	chr11	89084745	89084945	+	731.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033266, intron 2 of 3)	intron (NM_001033266, intron 2 of 3)	11004.0	NM_001033266	217071.0	Mm.342127	NM_001033266	ENSMUSG00000072553	Gm525	-	predicted gene 525	protein-coding	3.19266651116761	3.490219473659	3.69073383307833	3.27913424261618	3.83695820859417	2.60383995369204	3.56958198741436	3.91195520422032	0.245618081562929	0.66358570854035	0.991657818949578
Merged-chr1-164014770-3	chr1	164014693	164014893	+	851.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6B|LTR|ERVK	19904.0	NM_001355132	69962.0	Mm.27284	NM_027279	ENSMUSG00000041396	Mettl18	2810422O20Rik|C78571	methyltransferase like 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-40023374-1	chr15	40023274	40023474	+	917.0	f0_balb.idr	Intergenic	Intergenic	-21814.0	NR_155348	102636079.0	Mm.421381	NR_155348	ENSMUSG00000115142	Gm33251	-	predicted gene, 33251	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-119426687-1	chr13	119426587	119426787	+	547.0	f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-1913.0	NM_001079849	218693.0	Mm.490243	NM_145457	ENSMUSG00000025451	Paip1	PAIP-1	polyadenylate binding protein-interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-14706440-2	chr18	14706340	14706540	+	894.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360823, intron 1 of 5)	intron (NM_001360823, intron 1 of 5)	289.0	NM_001360823	73677.0	Mm.87277	NM_001163609	ENSMUSG00000036743	Psma8	2410072D24Rik	proteasome (prosome, macropain) subunit, alpha type, 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-45493363-4	chr5	45493256	45493456	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024434)	promoter-TSS (NM_024434)	-18.0	NM_024434	66988.0	Mm.286830	NM_024434	ENSMUSG00000039682	Lap3	2410015L10Rik|AA410100|LAP-3|Lap|Lapep|Pep-7|Pep-S|Pep7|Peps	leucine aminopeptidase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-5538953-2	chr2	5538932	5539132	+	614.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290375, intron 2 of 10)	intron (NM_001290375, intron 2 of 10)	137014.0	NM_001290376	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	1.58093193577409	1.70793420124255	2.32979927313853	0.715496359847589	0.691939490508639	0.756160172198574	1.52067386010412	0.718337470487855	-2.52420304059323	0.0870576113117832	0.453523805082254
Merged-chr16-55477003-4	chr16	55476916	55477116	+	833.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17715.0	NR_039578	100628589.0		NR_039578	ENSMUSG00000093292	Mir5118	mmu-mir-5118|mu-mir-5118	microRNA 5118	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-53696080-1	chr9	53695980	53696180	+	647.0	f0_balb.idr	intron (NM_175562, intron 1 of 1)	PB1D7|SINE|Alu	10152.0	NM_175562	270160.0	Mm.290285	NM_175562	ENSMUSG00000055069	Rab39	C230094F14Rik|Rab39a	RAB39, member RAS oncogene family	protein-coding	0.783448201520625	0.772442680841011	0.131282135550994	0.126205644868032	0.119003139294441	0.13931279446996	0.132730400414958	0.687105443547358	-1.28137651163741	0.550242636097645	1
Merged-chr11-69903211-2	chr11	69903111	69903311	+	778.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_001291119, exon 2 of 28)	exon (NM_001291119, exon 2 of 28)	1395.0	NM_001013414	216860.0	Mm.268347	NM_001013414	ENSMUSG00000047284	Neurl4	-	neuralized E3 ubiquitin protein ligase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-43426249-4	chr11	43426166	43426366	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013917)	promoter-TSS (NM_013917)	-18.0	NM_001131054	30939.0	Mm.6856	NM_013917	ENSMUSG00000020415	Pttg1	AW555095|C87862|Pttg|Pttg3	pituitary tumor-transforming gene 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-38378490-4	chr2	38378394	38378594	+	716.287476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27186.0	NM_010710	16870.0	Mm.142856	NM_010710	ENSMUSG00000000247	Lhx2	LH2A|Lh-2|Lim2|ap|apterous	LIM homeobox protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4053723-2	chr19	4053623	4053823	+	612.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CAAAA)n|Simple_repeat|Simple_repeat	5724.0	NM_144869	225884.0	Mm.440201	NM_144869	ENSMUSG00000058216	Gstp3	-	glutathione S-transferase pi 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-93523841-1	chr2	93523741	93523941	+	591.0	f0_balb.idr	Intergenic	Intergenic	-60891.0	NM_001136055	12521.0	Mm.4261	NM_007656	ENSMUSG00000027215	Cd82	AA682076|AL023070|C33|IA4|Kai1|Tspan27	CD82 antigen	protein-coding	0.851132319871736	1.12801572886673	1.9535724974402	1.71815390636115	1.31953977220304	1.48830866763473	0.886948707094069	1.51511575831489	-0.610459963863311	0.642575685673811	0.982823301118608
Merged-chr7-97172367-4	chr7	97172264	97172464	+	884.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162477, intron 1 of 9)	intron (NM_001162477, intron 1 of 9)	90613.0	NM_010248	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124641239-2	chr6	124641139	124641339	+	695.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-5154.0	NM_173864	317677.0	Mm.483270	NM_173864	ENSMUSG00000079343	C1s2	C1sb|EG317677|Gm5077	complement component 1, s subcomponent 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-45554985-4	chr17	45554880	45555080	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001304956)	promoter-TSS (NM_001304956)	-720.0	NM_008690	18037.0	Mm.57043	NM_008690	ENSMUSG00000023947	Nfkbie	I-kappa-B-epsilon|IKBE|IkB-E|NF-kappa-BIE|ikB-epsilon	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, epsilon	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-43576467-2	chr10	43576367	43576567	+	578.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2702.0	NM_009846	12484.0	Mm.29742	NM_009846	ENSMUSG00000047139	Cd24a	Cd24|HSA|Ly-52|nectadrin	CD24a antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-102794590-2	chr4	102794490	102794690	+	713.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144906, intron 1 of 23)	intron (NM_144906, intron 1 of 23)	34455.0	NM_001285859	73094.0	Mm.54201	NM_144906	ENSMUSG00000028524	Sgip1	3110007P09Rik|SGIP1alpha|gag	SH3-domain GRB2-like (endophilin) interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-25036966-3	chr19	25036858	25037058	+	714.277771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028785, intron 1 of 47)	intron (NM_028785, intron 1 of 47)	37429.0	NM_028785	76088.0	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	3.27918914577063	4.182051259052	3.14144635861717	3.22847604172451	2.91380374725444	3.46280421447304	2.36696569528143	2.09232596135378	-1.17714581749518	0.0781258251840138	0.425425257439242
Merged-chr1-85986984-4	chr1	85986901	85987101	+	963.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25946.0	NM_001033290	227326.0	Mm.244158	NM_001033290	ENSMUSG00000049608	Gpr55	CTFL|Gm218|Lpir1	G protein-coupled receptor 55	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34906635-2	chr17	34906535	34906735	+	836.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286575, intron 13 of 27)	intron (NM_001286575, intron 13 of 27)	7661.0	NM_145830	110147.0	Mm.35345	NM_145830	ENSMUSG00000013787	Ehmt2	Bat8|D17Ertd710e|G9a|KMT1C|NG36	euchromatic histone lysine N-methyltransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-36236115-2	chr2	36236015	36236215	+	727.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008969, intron 2 of 10)	intron (NM_008969, intron 2 of 10)	5689.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-60756336-2	chr10	60756236	60756436	+	632.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-3554.0	NM_023596	71279.0	Mm.284462	NM_023596	ENSMUSG00000020100	Slc29a3	4933435C21Rik|AW987637|Ent3	solute carrier family 29 (nucleoside transporters), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-134496745-4	chr4	134496624	134496824	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285847)	promoter-TSS (NM_001285847)	-37.0	NM_001285845	71904.0	Mm.142343	NM_027995	ENSMUSG00000037348	Paqr7	2310021M12Rik|AV001994|BB007237|Mpra|PGLP|mPR	progestin and adipoQ receptor family member VII	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69111962-2	chr11	69111862	69112062	+	836.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A|LTR|ERVL-MaLR	-8491.0	NM_033041	84653.0	Mm.98505	NM_033041	ENSMUSG00000023781	Hes7	bHLHb37	hes family bHLH transcription factor 7	protein-coding	0.212319269000578	0.240140840343391	1.18688149632322	0.224137021169298	0.660712251904929	0.242150627889896	1.10988324721131	0.225368181545086	0.290863470701637	0.884670088222065	1
Merged-chr1-184662325-2	chr1	184662225	184662425	+	945.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50172.0	NR_040627	74971.0	Mm.410816	NR_040627	ENSMUSG00000092578	4930488B22Rik	-	RIKEN cDNA 4930488B22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-117481077-1	chr7	117480977	117481177	+	543.0	f0_balb.idr	intron (NM_175645, intron 2 of 11)	intron (NM_175645, intron 2 of 11)	100098.0	NM_175645	233781.0	Mm.461427	NM_175645	ENSMUSG00000030657	Xylt1	8030490L12	xylosyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-63431285-4	chr13	63431200	63431400	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347515, intron 1 of 15)	(CCCCG)n|Simple_repeat|Simple_repeat	445.0	NM_001347515	14088.0	Mm.126106	NM_007985	ENSMUSG00000021461	Fancc	Facc	Fanconi anemia, complementation group C	protein-coding	2.55342711416576	1.20956891183149	1.17780649385256	2.28259340795741	2.75938345178547	2.22030908583811	1.18494124290431	2.39232872553335	0.669165734531504	0.556977748349301	0.960321604678676
Merged-chr14-101560814-4	chr14	101560724	101560924	+	875.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081278, intron 1 of 18)	intron (NM_001081278, intron 1 of 18)	48367.0	NM_001081278	210789.0	Mm.320639	NM_173380	ENSMUSG00000033083	Tbc1d4	5930406J04Rik|A930035N22|AV295684|As160	TBC1 domain family, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72101566-2	chr6	72101466	72101666	+	877.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011375, intron 1 of 6)	intron (NM_011375, intron 1 of 6)	3958.0	NM_011375	20454.0	Mm.38248	NM_011375	ENSMUSG00000056091	St3gal5	3S-T|Siat9|[a]2	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117859107-4	chr10	117858997	117859197	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	-13123.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-7877560-4	chr17	7877470	7877670	+	945.0166630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48430.0	NM_145968	72536.0	Mm.119680	NM_145968	ENSMUSG00000033450	Tagap	2610315E15Rik|TRD|Tcd-1|Tcd1|Tcd1a|tcs-1|tcs1	T cell activation Rho GTPase activating protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-155054864-2	chr4	155054764	155054964	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12166.0	NM_001042407	668173.0	Mm.133114	NM_001042407	ENSMUSG00000029047	Pex10	AV128229|Gm142	peroxisomal biogenesis factor 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5198113-2	chr17	5198013	5198213	+	612.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 4 of 19)	intron (NM_001085355, intron 4 of 19)	203039.0	NM_001085355	239985.0	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-149858727-3	chr4	149858605	149858805	+	881.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-84438.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	-0.0504364970809889	-0.0261166644149788	-0.0339680527356805	0.883039832173762	-0.0488864938065462	-0.0243616025292754	-0.0322270278755222	0.97585310168294	0.219911410713375	0.92410977947703	1
Merged-chr4-108460323-2	chr4	108460223	108460423	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175472, intron 2 of 30)	CpG-10127	897.0	NM_175472	230594.0	Mm.25181	NM_175472	ENSMUSG00000034610	Zcchc11	6030404K05Rik|9230115F04Rik|PPAPD3|mKIAA0191	zinc finger, CCHC domain containing 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-139272518-2	chr7	139272419	139272619	+	667.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24037.0	NM_001098636	101631.0	Mm.334300	NM_001033206	ENSMUSG00000060260	Pwwp2b	AI594893|D7Ertd517e|D930023J19Rik|Pwwp2	PWWP domain containing 2B	protein-coding	0.717557473178766	0.377196506679056	0.183340942875392	0.698288821869343	0.172538681733277	0.190466628972725	0.184622509879484	0.705130536468372	-1.20340123184661	0.549819075531216	1
Merged-chr13-113444678-4	chr13	113444597	113444797	+	987.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR40b|LTR|ERVL	58147.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-130715885-5	chr1	130715800	130716000	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027859)	promoter-TSS (NR_027859)	-79.0	NR_027859	18640.0	Mm.249861	NM_008825	ENSMUSG00000026409	Pfkfb2	4930568D07Rik	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96668846-2	chr3	96668746	96668946	+	576.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1285.0	NM_001356539	213121.0	Mm.39732	NM_001081139	ENSMUSG00000038354	Ankrd35	4732436F15Rik	ankyrin repeat domain 35	protein-coding	1.57531277330806	2.05771139457606	1.10511852954116	2.03465856887358	1.5884086582101	2.07400781416453	1.11046484493321	2.59921783183246	0.600587876396741	0.597231082877021	0.971902489067841
Merged-chr19-47430366-2	chr19	47430266	47430466	+	718.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008018, intron 1 of 14)	intron (NM_008018, intron 1 of 14)	34045.0	NM_001164717	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4081693-2	chr16	4081593	4081793	+	916.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3883.0	NM_026508	68015.0	Mm.123366	NM_026508	ENSMUSG00000005981	Trap1	2410002K23Rik|HSP75	TNF receptor-associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81265760-2	chr10	81265660	81265860	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_025317, exon 2 of 3)	exon (NM_025317, exon 2 of 3)	1166.0	NM_025317	66047.0	Mm.43397	NM_025317	ENSMUSG00000034932	Mrpl54	0610008M19Rik|D10Sut1e	mitochondrial ribosomal protein L54	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-145935816-2	chr3	145935716	145935916	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-2198.0	NM_001356284	66421.0	Mm.25137	NM_025555	ENSMUSG00000036873	2410004B18Rik	4930572C24Rik	RIKEN cDNA 2410004B18 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-39240625-1	chr18	39240525	39240725	+	562.0	f0_balb.idr	intron (NM_001361073, intron 14 of 21)	intron (NM_001361073, intron 14 of 21)	246620.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71221628-4	chr17	71221536	71221736	+	855.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357791, intron 2 of 19)	intron (NM_001357791, intron 2 of 19)	16982.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	0.641593390742316	1.45687390469126	0.675843878311605	0.66320943022412	1.14849082527252	2.08218648434869	1.1062692514022	1.22018263054548	2.14026696361816	0.142993305944302	0.5904731564462
Merged-chr7-110221269-3	chr7	110221179	110221379	+	921.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009302)	promoter-TSS (NM_009302)	-424.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-57765994-2	chr8	57765894	57766094	+	768.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-112939.0	NM_144731	108150.0	Mm.62886	NM_144731	ENSMUSG00000031608	Galnt7	AI225872	polypeptide N-acetylgalactosaminyltransferase 7	protein-coding	0.895584336920628	0.436641976465545	0.429008938826301	0.965348900340692	1.07870274264386	0.438360053337266	0.430694075099259	0.972529795751399	0.329482134077466	0.855791988043735	1
Merged-chr5-69592184-4	chr5	69592079	69592279	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359239, intron 1 of 6)	CpG	125.0	NM_001347363	67980.0	Mm.33830	NM_027681	ENSMUSG00000029209	Gnpda2	4921523I18Rik|4933412A11Rik|BB189630|GNPDA|Gnp2|Sb52|mKIAA4008	glucosamine-6-phosphate deaminase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-114260750-2	chr6	114260650	114260850	+	576.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21885.0	NM_178703	232333.0	Mm.5260	NM_178703	ENSMUSG00000030310	Slc6a1	A730043E01|GABATHG|GABATR|GAT-1|Gabt|Gabt1|Gat1|XT-1|Xtrp1	solute carrier family 6 (neurotransmitter transporter, GABA), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-119220468-4	chr6	119220336	119220536	+	629.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001033379, exon 9 of 9)	3' UTR (NM_001033379, exon 9 of 9)	-16090.0	NM_001033382	319734.0	Mm.440773	NM_001033382	ENSMUSG00000041460	Cacna2d4	5730412N02Rik|BE686333	calcium channel, voltage-dependent, alpha 2/delta subunit 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5809360-2	chr17	5809260	5809460	+	825.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9870.0	NR_045080	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-31079688-2	chr2	31079588	31079788	+	567.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355105, intron 6 of 15)	intron (NM_001355105, intron 6 of 15)	16812.0	NM_001177650	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-28419905-1	chr5	28419805	28420005	+	571.0	f0_balb.idr	TTS (NM_028234)	TTS (NM_028234)	-47079.0	NR_015562	654796.0	Mm.57202	NR_015562	ENSMUSG00000097726	9530036O11Rik	-	RIKEN cDNA 9530036O11Rik	ncRNA	-0.636356668391408	-0.459606222893288	-0.631224047858436	-0.633167850266402	-0.400751439591251	-0.312275398728976	-0.473429861223029	-0.63282951244621	2.10307260420783	0.409267722204238	1
Merged-chr11-97687540-2	chr11	97687440	97687640	+	884.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085500, intron 2 of 2)	intron (NM_001085500, intron 2 of 2)	1588.0	NM_001085500	217149.0	Mm.29659	NM_001085500	ENSMUSG00000078695	Cisd3	Mel-13|Mel13	CDGSH iron sulfur domain 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-66383715-2	chr8	66383615	66383815	+	893.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_175188, intron 4 of 7)	intron (NM_175188, intron 4 of 7)	-2586.0	NM_001166375	72925.0	Mm.380457	NM_175188	ENSMUSG00000036469	March1	2900024D24Rik|BB085186	membrane-associated ring finger (C3HC4) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135980806-2	chr5	135980706	135980906	+	558.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011776, intron 1 of 7)	MT2B|LTR|ERVL	701.0	NM_011776	22788.0	Mm.1381	NM_011776	ENSMUSG00000004948	Zp3	Zp-3	zona pellucida glycoprotein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-41083247-2	chr2	41083147	41083347	+	622.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_053011, intron 41 of 90)	Lx2B2|LINE|L1	1364321.0	NR_105754	102465171.0		NR_105754	ENSMUSG00000098660	Mir6336	Gm27584|mmu-mir-6336	microRNA 6336	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-83647634-2	chr10	83647534	83647734	+	924.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145220, intron 1 of 20)	(CAAA)n|Simple_repeat|Simple_repeat	1030.0	NM_145220	216190.0	Mm.282985	NM_145220	ENSMUSG00000020263	Appl2	Dip3b	adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-187215441-4	chr1	187215350	187215550	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028848)	promoter-TSS (NM_028848)	-4.0	NM_029067	74717.0	Mm.250430	NM_028848	ENSMUSG00000026611	Spata17	1700065F16Rik|4930504I07Rik|4930513F16Rik|MSRG-11	spermatogenesis associated 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-83703827-2	chr17	83703727	83703927	+	905.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR17B_Mm|LTR|ERVK	-2336.0	NM_001171054	116871.0	Mm.277668	NM_054082	ENSMUSG00000055817	Mta3	1110002J22Rik|mKIAA1266	metastasis associated 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-114372311-1	chr5	114372211	114372411	+	547.0	f1_c57bl6.idr	intron (NM_001159941, intron 2 of 6)	intron (NM_001159941, intron 2 of 6)	8194.0	NM_001159941	330171.0	Mm.238285	NM_026145	ENSMUSG00000001098	Kctd10	AW536343|C87062|mBACURD3	potassium channel tetramerisation domain containing 10	protein-coding	1.21116196265019	1.19586162485605	0.262500941928756	0.255271508961078	0.693102148729768	0.273826289402154	0.264553279793443	0.256540202833719	-2.44876111503511	0.220335760034577	1
Merged-chr16-4080908-2	chr16	4080808	4081008	+	705.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3098.0	NM_026508	68015.0	Mm.123366	NM_026508	ENSMUSG00000005981	Trap1	2410002K23Rik|HSP75	TNF receptor-associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-38864874-3	chr12	38864777	38864977	+	956.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347379, intron 11 of 11)	intron (NM_001347379, intron 11 of 11)	81166.0	NM_001163154	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-153847085-4	chr1	153847000	153847200	+	833.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2959.0	NM_001243223	240816.0	Mm.329340	NM_001243223	ENSMUSG00000042641	Rgsl1	4930415K13Rik|Gm202|Rgsl2	regulator of G-protein signaling like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6294022-2	chr19	6293922	6294122	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010119, intron 2 of 4)	intron (NM_010119, intron 2 of 4)	-12435.0	NM_001033342	240505.0	Mm.329622	NM_001033342	ENSMUSG00000024769	Cdc42bpg	BC046418|MRCKgamma	CDC42 binding protein kinase gamma (DMPK-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-47147955-4	chr19	47147857	47148057	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3783.0	NM_001081271	546729.0	Mm.439624	NM_001081271	ENSMUSG00000079258	Calhm1	EG546729	calcium homeostasis modulator 1	protein-coding	3.62701774365113	1.99800572005427	2.11942990203931	2.69799469707247	2.36903585295988	2.53696296163256	3.14881354501271	1.66221261297313	-0.502625205642833	0.554679203469047	0.959914380895535
Merged-chr13-41574070-3	chr13	41573994	41574194	+	642.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MD|LINE|L1	-32122.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117361690-3	chr8	117361581	117361781	+	932.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028941, intron 1 of 20)	intron (NM_028941, intron 1 of 20)	12511.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3745609-4	chr12	3745512	3745712	+	993.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162465, intron 12 of 17)	intron (NM_001162465, intron 12 of 17)	-61368.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-92400206-4	chr16	92400101	92400301	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019466)	promoter-TSS (NM_019466)	-123.0	NM_019466	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-80949973-2	chr15	80949873	80950073	+	913.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009634, intron 1 of 12)	B3|SINE|B2	1483.0	NM_009634	11564.0	Mm.38151	NM_009634	ENSMUSG00000022407	Adsl	Adl|Asl	adenylosuccinate lyase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-16163874-4	chr4	16163744	16163944	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001329751)	promoter-TSS (NM_001329751)	-201.0	NR_138102	192656.0	Mm.112765	NM_138952	ENSMUSG00000041135	Ripk2	2210420D18Rik|CARD3|CARDIAK|CCK|D4Bwg0615e|RICK|RIP2	receptor (TNFRSF)-interacting serine-threonine kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-36216677-4	chr2	36216584	36216784	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	G-rich|Low_complexity|Low_complexity	-13742.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-118181012-4	chr14	118180920	118181120	+	945.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43893.0	NM_021434	58245.0	Mm.275411	NM_021434	ENSMUSG00000022131	Gpr180	AB041545|E130016I23Rik|Itr	G protein-coupled receptor 180	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-84235498-2	chr15	84235399	84235599	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_133167, intron 1 of 12)	intron (NM_133167, intron 1 of 12)	3456.0	NM_133167	170736.0	Mm.323892	NM_133167	ENSMUSG00000022438	Parvb	AI595373|AW742462|D15Gsk1|affixin	parvin, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-62828154-2	chr9	62828054	62828254	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10633.0	NM_001033175	76524.0	Mm.283636	NM_001033175	ENSMUSG00000032245	Cln6	1810065L06Rik|AW743417|D9Bwg1455e|nclf	ceroid-lipofuscinosis, neuronal 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-139598164-1	chr4	139598064	139598264	+	678.0	f1_c57bl6.idr	intron (NM_001205173, intron 1 of 8)	intron (NM_001205173, intron 1 of 8)	23444.0	NM_001205173	212632.0	Mm.30464	NM_183148	ENSMUSG00000041025	Iffo2	C79267	intermediate filament family orphan 2	protein-coding	0.37598150354342	0.4084055365805	1.27217608729297	1.01101916944336	0.554535826098384	1.35531212298499	0.400275480743655	0.391218632595163	-0.339433348712718	0.849418811615999	0.998431161219273
Merged-chr10-81517435-4	chr10	81517352	81517552	+	828.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010304, intron 1 of 6)	intron (NM_010304, intron 1 of 6)	6773.0	NM_010304	14676.0	Mm.1546	NM_010304	ENSMUSG00000034792	Gna15	G[a]15|Galpha15	guanine nucleotide binding protein, alpha 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46761423-4	chr19	46761343	46761543	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033569)	promoter-TSS (NM_033569)	-166.0	NM_033569	94219.0	Mm.306903	NM_033569	ENSMUSG00000064105	Cnnm2	AU015877|AW048635|Acdp2|Clp2	cyclin M2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116379758-4	chr11	116379663	116379863	+	843.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027258, intron 2 of 18)	intron (NM_027258, intron 2 of 18)	33269.0	NM_027258	217340.0	Mm.426344	NM_027258	ENSMUSG00000052949	Rnf157	2610036E23Rik|A130073L17Rik|mKIAA1917	ring finger protein 157	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-97226620-2	chr3	97226520	97226720	+	684.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029933, intron 1 of 9)	intron (NM_029933, intron 1 of 9)	744.0	NM_029933	77578.0	Mm.226175	NM_029933	ENSMUSG00000038256	Bcl9	2610202E01Rik|8030475K17Rik|A330041G23Rik|Gm130	B cell CLL/lymphoma 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-143955171-2	chr2	143955071	143955271	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_024281, exon 13 of 24)	exon (NM_024281, exon 13 of 24)	39840.0	NM_019771	56431.0	Mm.28919	NM_019771	ENSMUSG00000015932	Dstn	2610043P17Rik|ADF|AU042046|Dsn|corn1|sid23p	destrin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-149956409-2	chr4	149956309	149956509	+	654.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1403.0	NM_029035	74646.0	Mm.30	NM_029035	ENSMUSG00000039911	Spsb1	1110014L01Rik|4930422J18Rik|AI596360|AI854583|SSB-1|SSB1	splA/ryanodine receptor domain and SOCS box containing 1	protein-coding	1.68362724207548	1.74440964972126	2.04863323999276	1.32275936037671	1.69708294859102	1.75692445857298	2.25155610666991	1.32778277796815	0.241516165827332	0.818661455589362	0.998431161219273
Merged-chr2-52891318-4	chr2	52891225	52891425	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	MLT1F|LTR|ERVL-MaLR	33457.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-106235496-2	chr7	106235396	106235596	+	755.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20156.0	NM_029000	74558.0	Mm.458429	NM_029000	ENSMUSG00000045868	Gvin1	9130002C22Rik|9830104F22Rik|Iigs1|VLIG|VLIG-1	GTPase, very large interferon inducible 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-156041611-1	chr1	156041511	156041711	+	772.0	f1_c57bl6.idr	intron (NM_172843, intron 2 of 6)	PB1D9|SINE|Alu	750.0	NM_022329	240832.0	Mm.253335	NM_022329	ENSMUSG00000050565	Tor1aip2	1110020D10Rik|15kDa|A130072J07|AA103493|AW060462|AW610675|C77739|Ifrg15|Lull1	torsin A interacting protein 2	protein-coding	0.38225619493192	0.7369907424486	0.427072922905562	0.661836011684878	0.246466589150995	0.746391782703412	0.431848508022054	0.253706261246574	-0.848670739772929	0.630680882947253	1
Merged-chr7-135641962-1	chr7	135641862	135642062	+	643.0	f0_balb.idr	intron (NM_001316679, intron 1 of 19)	intron (NM_001316679, intron 1 of 19)	-9937.0	NM_001316681	19267.0	Mm.945	NM_011212	ENSMUSG00000041836	Ptpre	PTPe|PTPepsilon|RPTPepsilon	protein tyrosine phosphatase, receptor type, E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-65491911-4	chr5	65491819	65492019	+	838.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133697, intron 1 of 4)	intron (NM_133697, intron 1 of 4)	916.0	NM_133697	68552.0	Mm.10709	NM_133697	ENSMUSG00000037822	Smim14	1110003E01Rik|1700127H04Rik|5430439C17Rik|MAd4	small integral membrane protein 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-44589509-4	chr10	44589408	44589608	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-130760.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30973273-2	chr7	30973173	30973373	+	583.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_038860)	promoter-TSS (NR_038860)	196.0	NM_001164185	54135.0	Mm.4067	NM_017405	ENSMUSG00000001247	Lsr	ILDR3|Lisch7	lipolysis stimulated lipoprotein receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-131875432-3	chr4	131875317	131875517	+	787.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020587, intron 1 of 5)	intron (NM_020587, intron 1 of 5)	1778.0	NM_020587	57317.0	Mm.2478	NM_020587	ENSMUSG00000028911	Srsf4	5730499P16Rik|AW550192|MNCb-2616|SRp75|Sfrs4	serine/arginine-rich splicing factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-93906457-4	chr16	93906357	93906557	+	838.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_028083)	TTS (NM_028083)	22556.0	NM_028083	110749.0	Mm.274222	NM_028083	ENSMUSG00000022945	Chaf1b	2600017H24Rik|C76145|CAF-I p60|CAF-Ip60|CAF1|CAF1A|CAF1P60|MPHOSPH7	chromatin assembly factor 1, subunit B (p60)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-62243071-3	chr10	62242970	62243170	+	736.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9368.0	NM_009314	21337.0	Mm.8054	NM_009314	ENSMUSG00000020081	Tacr2	Nk2r|Skr|Tac2r	tachykinin receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-99450108-1	chr9	99450008	99450208	+	587.0	f0_balb.idr	Intergenic	Intergenic	-6135.0	NM_001165957	623534.0	Mm.484967	NM_001165957		Nme9	Txndc6	NME/NM23 family member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-61267424-4	chr9	61267293	61267493	+	974.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045334, intron 3 of 4)	intron (NR_045334, intron 3 of 4)	26416.0	NR_045334	622037.0	Mm.126243	NR_045334	ENSMUSG00000111658	B930092H01Rik	-	RIKEN cDNA B930092H01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69411809-4	chr11	69411717	69411917	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001017426, intron 1 of 22)	CpG	1858.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	5.14757408175579	4.60495817956586	4.51129020740776	5.12369992001939	4.92936494542677	5.23476301223951	4.88363549514197	5.63959159007468	0.379280845636454	0.262533088868833	0.764037516230982
Merged-chr8-72240783-2	chr8	72240676	72240876	+	829.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_007456, intron 1 of 11)	B1_Mm|SINE|Alu	758.0	NM_007456	11767.0	Mm.290086	NM_007456	ENSMUSG00000003033	Ap1m1	AA408894|AP47|Adtm1A|Cltnm|mu1A	adaptor-related protein complex AP-1, mu subunit 1	protein-coding	3.61358832836604	1.46284537523363	1.41506058783871	2.60557678402232	2.6793757908984	2.80471155548558	2.58874656702299	3.141478501985	0.326788507952227	0.721870641392607	0.998431161219273
Merged-chr8-84224713-1	chr8	84224613	84224813	+	713.0	f1_balb.idr	intron (NM_172503, intron 7 of 13)	intron (NM_172503, intron 7 of 13)	12329.0	NM_172503	212168.0	Mm.117094	NM_172503	ENSMUSG00000035671	Zswim4	D330002I24|E130119J17Rik	zinc finger SWIM-type containing 4	protein-coding	1.45258612809084	2.39370824792913	2.06872725715522	1.06662907292366	2.53250091490672	1.13236217863092	1.37510391595156	2.97810319360602	0.891465296135184	0.431322264410332	0.904679012727573
Merged-chr19-3605017-1	chr19	3604917	3605117	+	574.0	f1_balb.idr	intron (NM_008513, intron 14 of 22)	intron (NM_008513, intron 14 of 22)	-29268.0	NM_028999	52036.0	Mm.284686	NM_028999	ENSMUSG00000024908	Ppp6r3	4930528G08Rik|9130026N02Rik|D19Bwg1430e|D19Ertd703e|Pp6r3|Ppcs3|Pptcs3|Sapl|Saps3|mKIAA1558	protein phosphatase 6, regulatory subunit 3	protein-coding	0.105880596998112	0.127718775603724	0.120616614783927	0.884283596420295	0.107258179148777	0.517646422850341	0.122187252366517	0.893294060188187	0.523046801788617	0.805984924344141	1
Merged-chr10-63376314-2	chr10	63376214	63376414	+	841.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-6129.0	NM_001253685	30045.0	Mm.32550	NM_013888	ENSMUSG00000036764	Dnajc12	Jdp1|mJDP1	DnaJ heat shock protein family (Hsp40) member C12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-115148741-4	chr13	115148635	115148835	+	978.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46771.0	NM_001033228	109700.0	Mm.317280	NM_001033228	ENSMUSG00000042284	Itga1	CD49A|E130012M19Rik|Vla1	integrin alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-102707522-3	chr2	102707425	102707625	+	796.4111330000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077515, intron 1 of 10)	intron (NM_001077515, intron 1 of 10)	1087.0	NM_001077515	20511.0	Mm.267547	NM_011393	ENSMUSG00000005089	Slc1a2	1700091C19Rik|2900019G14Rik|AI159670|Eaat2|GLT-1|GLT1|MGLT1	solute carrier family 1 (glial high affinity glutamate transporter), member 2	protein-coding	0.430698319701986	0.164833230094987	0.157712678867972	0.329499673793555	0.144331671212869	0.940384140892108	0.881676256703273	0.153155060960537	2.10391217046034	0.291685892428565	1
Merged-chr2-152764194-2	chr2	152764114	152764314	+	887.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_053091, intron 4 of 4)	MIRb|SINE|MIR	10041.0	NM_053091	84682.0	Mm.196668	NM_053091	ENSMUSG00000009876	Cox4i2	Cox4b|CoxIV-2	cytochrome c oxidase subunit 4I2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-5297511-4	chr6	5297431	5297631	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183308, intron 1 of 8)	intron (NM_183308, intron 1 of 8)	842.0	NM_183308	330260.0	Mm.126984	NM_183308	ENSMUSG00000032667	Pon2	6330405I24Rik|AI481612	paraoxonase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-92127327-3	chr6	92127284	92127484	+	918.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347342, intron 2 of 14)	intron (NM_001347342, intron 2 of 14)	34951.0	NM_001347342	22026.0	Mm.87062	NM_011630	ENSMUSG00000005893	Nr2c2	TAK1|Tr4|mKIAA4145	nuclear receptor subfamily 2, group C, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-8452392-4	chr8	8452282	8452482	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	208391.0	NM_010111	13642.0	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-52461839-3	chr5	52461680	52461880	+	743.388916	f0_balb.idr|f0_c57.idr|f1_balb.idr	intron (NM_001256059, intron 1 of 11)	URR1B|DNA|hAT-Charlie	9763.0	NM_001256059	100503884.0	Mm.332379	NM_001256059	ENSMUSG00000045790	Ccdc149	Gm447	coiled-coil domain containing 149	protein-coding	2.8209506244694	1.36443295057223	3.0686467420407	1.55654632191982	2.17388732921924	1.67850099609994	3.63249809928231	2.74535446541478	0.657528369897535	0.490924812025468	0.934345795476137
Merged-chr6-134248323-1	chr6	134248223	134248423	+	753.0	f1_c57bl6.idr	exon (NM_007961, exon 5 of 8)	exon (NM_007961, exon 5 of 8)	-148006.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	1.3367889812997	1.02188142201754	1.91397736034905	2.53321295889171	1.87121896725563	1.02732879617251	2.49869987325914	0.981086751636397	-0.194522257323678	0.877903507102145	0.998431161219273
Merged-chr16-91905473-4	chr16	91905395	91905595	+	783.56665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010587, exon 34 of 39)	exon (NM_010587, exon 34 of 39)	26135.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-49267119-4	chr6	49267014	49267214	+	901.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3062.0	NM_001362188	101214.0	Mm.196598	NM_198102	ENSMUSG00000029817	Tra2a	1500010G04Rik|AL022798|G430041M01Rik|mAWMS1	transformer 2 alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-33984563-1	chr17	33984463	33984663	+	574.0	f1_c57bl6.idr	non-coding (NR_033305, exon 1 of 1)	non-coding (NR_033305, exon 1 of 1)	3071.0	NR_033305	433100.0	Mm.380381	NM_001013793		AA388235	-	expressed sequence AA388235	ncRNA	2.61256108791742	1.64849458965981	0.955954861596409	2.20116203105793	1.71829230778856	0.985594659107552	1.60059846459602	0.939966664679284	-1.82386678593429	0.14620644764964	0.596296396331935
Merged-chr11-103258415-4	chr11	103258320	103258520	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016896, intron 1 of 15)	intron (NM_016896, intron 1 of 15)	8981.0	NM_016896	53859.0	Mm.158981	NM_016896	ENSMUSG00000020941	Map3k14	Nik|aly	mitogen-activated protein kinase kinase kinase 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97291528-3	chr6	97291454	97291654	+	888.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 23 of 23)	intron (NM_145148, intron 23 of 23)	-38774.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	3.4097615882758	3.74140492836424	3.20914823937506	2.34009924244967	3.94662560450639	3.83702958124231	2.76145332068576	2.80372940947158	0.302145162466917	0.638933375457465	0.982599433509505
Merged-chr2-68859856-3	chr2	68859748	68859948	+	895.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1593.0	NM_172856	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-90055436-6	chr9	90055246	90055446	+	926.4722289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001312649, intron 1 of 10)	AT_rich|Low_complexity|Low_complexity	1079.0	NM_001312649	13036.0	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-166149569-1	chr1	166149469	166149669	+	688.5	f0_balb.idr	intron (NM_021610, intron 2 of 6)	intron (NM_021610, intron 2 of 6)	19348.0	NM_001360925	59290.0	Mm.46357	NM_021610	ENSMUSG00000000544	Gpa33	2010310L10Rik|2210401D16Rik|BB116197|mA33	glycoprotein A33 (transmembrane)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80140305-3	chr10	80140278	80140478	+	861.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 1 of 4)	intron (NR_038088, intron 1 of 4)	-1011.0	NR_036582	100503659.0	Mm.485395	NM_015761	ENSMUSG00000035640	Cbarp	9630008F14|Dos|R29144/1	calcium channel, voltage-dependent, beta subunit associated regulatory protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-77455195-2	chr11	77455139	77455339	+	652.56665	f1_balb.idr|f1_c57bl6.idr	exon (NM_001291190, exon 14 of 14)	exon (NM_001291190, exon 14 of 14)	-8674.0	NM_139129	216961.0	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-20104642-4	chr10	20104470	20104670	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008580, intron 18 of 29)	intron (NM_008580, intron 18 of 29)	-44350.0	NM_008635	17761.0	Mm.20928	NM_008635	ENSMUSG00000019996	Map7	E-MAP-115|MAP-7|Mtap7|R75000|mshi|mste|ste	microtubule-associated protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-54830446-2	chr1	54830346	54830546	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081433, intron 1 of 27)	intron (NM_001081433, intron 1 of 27)	95941.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-83487197-3	chr12	83487062	83487262	+	824.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_058212, intron 1 of 8)	CpG	574.0	NM_001267626	70127.0	Mm.151308	NM_058212	ENSMUSG00000021221	Dpf3	2810403B03Rik|6530402L11Rik|BAF45C|C78788|CERD4|cer-d4	D4, zinc and double PHD fingers, family 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-117482400-2	chr12	117482300	117482500	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34079.0	NM_175930	217944.0	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80368008-1	chr10	80367908	80368108	+	559.0	f0_balb.idr	intron (NR_038088, intron 1 of 4)	intron (NR_038088, intron 1 of 4)	1629.0	NR_038088	100568459.0		NR_038088	ENSMUSG00000115783	Bc1	Gm24367	brain cytoplasmic RNA 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-101766683-2	chr13	101766583	101766783	+	831.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077495, intron 1 of 15)	intron (NM_001077495, intron 1 of 15)	1534.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4231818-4	chr19	4231705	4231905	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027196)	promoter-TSS (NM_027196)	-88.0	NM_027196	69745.0	Mm.32518	NM_027196	ENSMUSG00000024854	Pold4	2410012M21Rik|AI463381|AW060307|Polds|p12	polymerase (DNA-directed), delta 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-74827162-4	chr11	74827050	74827250	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3774.0	NM_010813	17428.0	Mm.3759	NM_010813	ENSMUSG00000000282	Mnt	Rox|bHLHd3	max binding protein	protein-coding	2.63121711057498	2.95676595825719	1.44149677347636	2.8607521904072	2.56440424562721	1.77985477852629	3.26349170719158	2.48480173630597	0.0763717727944549	0.929944649126174	0.998431161219273
Merged-chr11-80040375-2	chr11	80040234	80040434	+	693.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	40657.0	NM_001277106	54394.0	Mm.272093	NM_018776	ENSMUSG00000017561	Crlf3	BB164954|Creme9|Cytor4	cytokine receptor-like factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-36467816-4	chr3	36467700	36467900	+	991.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009673, intron 2 of 12)	intron (NM_009673, intron 2 of 12)	7724.0	NR_105976	102466786.0		NR_105976	ENSMUSG00000098808	Mir7009	Gm27472|mmu-mir-7009	microRNA 7009	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-34985-1	chr4	34885	35085	+	1000.0	f1_c57bl6.idr	Intergenic	Intergenic	-3137098.0	NM_001167534	100312470.0	Mm.480297	NM_001167534	ENSMUSG00000115072	Vmn1r2	Gm11776	vomeronasal 1 receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-84236866-2	chr15	84236766	84236966	+	649.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133167, intron 1 of 12)	L1MC2|LINE|L1	4823.0	NM_133167	170736.0	Mm.323892	NM_133167	ENSMUSG00000022438	Parvb	AI595373|AW742462|D15Gsk1|affixin	parvin, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-42502045-4	chr10	42501917	42502117	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017472)	promoter-TSS (NM_017472)	-37.0	NM_017472	54198.0	Mm.277870	NM_017472	ENSMUSG00000019804	Snx3	SDP3	sorting nexin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-164080121-3	chr1	164080027	164080227	+	814.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011346, exon 9 of 9)	3' UTR (NM_011346, exon 9 of 9)	18051.0	NM_011346	20343.0	Mm.1461	NM_011346	ENSMUSG00000026581	Sell	AI528707|CD62L|L-selectin|LECAM-1|Lnhr|Ly-22|Ly-m22|Lyam-1|Lyam1	selectin, lymphocyte	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-76531201-2	chr11	76531101	76531301	+	737.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198894, intron 1 of 22)	intron (NM_198894, intron 1 of 22)	-21782.0	NM_198018	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-31757838-4	chr16	31757754	31757954	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252436, intron 1 of 22)	intron (NM_001252436, intron 1 of 22)	3504.0	NM_001252436	13383.0	Mm.382	NM_007862	ENSMUSG00000022770	Dlg1	B130052P05Rik|Dlgh1|E-dlg/SAP97|SAP-97|SAP97|mKIAA4187	discs large MAGUK scaffold protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-123857104-4	chr9	123857115	123857315	+	815.71875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011798, intron 1 of 1)	intron (NM_011798, intron 1 of 1)	4814.0	NM_011798	23832.0	Mm.390241	NM_011798	ENSMUSG00000060509	Xcr1	Ccxcr1|Gpr5|mXcr1	chemokine (C motif) receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-22227289-4	chr8	22227199	22227399	+	794.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019576)	promoter-TSS (NM_019576)	-4.0	NM_001205253	56229.0	Mm.32067	NM_019576	ENSMUSG00000031480	Thsd1	4833423O18Rik|Tmtsp	thrombospondin, type I, domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-136578418-4	chr1	136578326	136578526	+	975.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46475.0	NM_177643	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-43771644-4	chr19	43771535	43771735	+	981.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4|LINE|L1	-10673.0	NM_013806	12780.0	Mm.39054	NM_013806	ENSMUSG00000025194	Abcc2	AI173996|Abc30|Cmoat|Mrp2|cMRP	ATP-binding cassette, sub-family C (CFTR/MRP), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125148605-6	chr6	125148536	125148736	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039669, intron 1 of 9)	intron (NM_001039669, intron 1 of 9)	3412.0	NM_001302779	320678.0	Mm.129415	NM_178787	ENSMUSG00000038271	Iffo1	4733401N06Rik|A930037G23Rik|HOM-TES-103|Iffo	intermediate filament family orphan 1	protein-coding	0.571242432609943	0.610081699654515	0.597599842009145	1.42811460395474	1.03568863943508	1.45859600699388	0.600371986826406	1.5286289597575	1.41129905408884	0.389303734274437	0.878578793881975
Merged-chr2-103008369-4	chr2	103008278	103008478	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	65135.0	NM_175094	27402.0	Mm.315011	NM_175094	ENSMUSG00000010914	Pdhx	AI481367|E3bp|Pdx1	pyruvate dehydrogenase complex, component X	protein-coding	5.28188364324926	5.17598576460844	4.52163047667799	5.33938522942999	4.62386509366531	5.54605488288469	5.01768396631257	5.1582515674897	-0.00332019544028972	0.992109348463049	0.998431161219273
Merged-chr4-134624755-2	chr4	134624655	134624855	+	778.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_207237, intron 2 of 11)	intron (NM_207237, intron 2 of 11)	-56904.0	NR_105829	102465216.0		NR_105829	ENSMUSG00000099289	Mir6403	Gm27992|mmu-mir-6403	microRNA 6403	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-118494623-4	chr7	118494519	118494719	+	908.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2644.0	NM_001033380	319622.0	Mm.323386	NM_001033380	ENSMUSG00000095115	Itpripl2	C130081G24|E030018N11Rik	inositol 1,4,5-triphosphate receptor interacting protein-like 2	protein-coding	0.95452835448076	1.69157627631746	2.22305324617573	1.41715691882532	2.51898918256044	1.03762011161872	1.2654806236929	2.07280748238256	0.576415760849066	0.634735164980225	0.982417279970648
Merged-chr15-55280813-2	chr15	55280713	55280913	+	670.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26937.0	NM_181277	12818.0	Mm.297859	NM_181277	ENSMUSG00000022371	Col14a1	5730412L22Rik|AW108078	collagen, type XIV, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91110639-2	chr2	91110539	91110739	+	715.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011355, intron 2 of 4)	B3A|SINE|B2	-7505.0	NM_008653	17868.0	Mm.10728	NM_008653	ENSMUSG00000002100	Mybpc3	-	myosin binding protein C, cardiac	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10174054-2	chr19	10173954	10174154	+	544.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8834.0	NM_146094	76267.0	Mm.30158	NM_146094	ENSMUSG00000010663	Fads1	0710001O03Rik|A930006B21Rik|AI317215|DSD	fatty acid desaturase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44241141-2	chr7	44241041	44241241	+	761.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5019.0	NR_029436	70004.0	Mm.158317	NR_029436	ENSMUSG00000038782	1700028J19Rik	-	RIKEN cDNA 1700028J19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-94379324-2	chr8	94379224	94379424	+	602.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7105.0	NM_001357205	64209.0	Mm.29151	NM_022331	ENSMUSG00000031770	Herpud1	Herp|Mifl|SUP	homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-35728287-2	chr2	35728187	35728387	+	654.25	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001114124, exon 16 of 16)	3' UTR (NM_001114124, exon 16 of 16)	31555.0	NM_001290639	69601.0	Mm.29629	NM_001001602	ENSMUSG00000026883	Dab2ip	2310011D08Rik|AI480459|Aip1|mKIAA1743	disabled 2 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36525687-4	chr18	36525590	36525790	+	906.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2462.0	NM_172830	240215.0	Mm.135463	NM_172830	ENSMUSG00000024485	Slc4a9	AE4|D630003B07|D630024F24Rik	solute carrier family 4, sodium bicarbonate cotransporter, member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-122018481-4	chr7	122018375	122018575	+	941.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028758, intron 1 of 16)	intron (NM_028758, intron 1 of 16)	2723.0	NM_028758	74105.0	Mm.29619	NM_028758	ENSMUSG00000030872	Gga2	1200007E24Rik|mKIAA1080	golgi associated, gamma adaptin ear containing, ARF binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-45554925-4	chr2	45554819	45555019	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-141686.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46131827-4	chr19	46131731	46131931	+	749.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007703)	promoter-TSS (NM_007703)	-68.0	NM_007703	12686.0	Mm.21806	NM_007703	ENSMUSG00000038754	Elovl3	CIN-2|Cig30	elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-31570957-4	chr16	31570871	31571071	+	906.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47162.0	NM_001357871	224098.0	Mm.125439	NM_001357870		Gm536	Gm1777	predicted gene 536	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-22991507-2	chr11	22991407	22991607	+	757.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_009837, intron 1 of 13)	intron (NM_009837, intron 1 of 13)	914.0	NM_009837	12464.0	Mm.296985	NM_009837	ENSMUSG00000007739	Cct4	2610204B21Rik|A45|C78323|Cctd	chaperonin containing Tcp1, subunit 4 (delta)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-54390617-2	chr11	54390517	54390717	+	806.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029105, intron 5 of 13)	intron (NM_029105, intron 5 of 13)	19965.0	NM_029105	74847.0	Mm.486538	NM_029105	ENSMUSG00000020332	Meikin	4930404A10Rik	meiotic kinetochore factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-153835810-3	chr3	153835701	153835901	+	863.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	-8446.0	NM_025758	66772.0	Mm.116960	NM_025758	ENSMUSG00000038997	Asb17	4933436O18Rik	ankyrin repeat and SOCS box-containing 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-156180367-4	chr2	156180254	156180454	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291114)	promoter-TSS (NM_001291114)	-116.0	NM_133242	170791.0	Mm.392436	NM_133242	ENSMUSG00000027620	Rbm39	1500012C14Rik|2310040E03Rik|B330012G18Rik|C79248|R75070|Rnpc2|caper	RNA binding motif protein 39	protein-coding	3.72617774768947	3.48299659300368	4.21702497432441	4.16024931534432	4.27351880733967	4.26250819082436	4.55080860318026	4.12515967748511	0.510692938016119	0.23726340929377	0.733808141787246
Merged-chr17-25164592-1	chr17	25164492	25164692	+	585.0	f1_balb.idr	exon (NM_001079929, exon 6 of 17)	exon (NM_001079929, exon 6 of 17)	2131.0	NM_001079929	207209.0	Mm.207121	NM_001079929	ENSMUSG00000059562	Ccdc154	Ccdc157|Gm317	coiled-coil domain containing 154	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-177498219-4	chr2	177498118	177498318	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_036450)	promoter-TSS (NR_036450)	-8.0	NR_036450	433520.0	Mm.425117	NM_001024825		Gm14403	-	predicted gene 14403	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-40520037-4	chr12	40519934	40520134	+	859.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	73981.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80069979-2	chr10	80069879	80070079	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_183426, exon 6 of 32)	exon (NM_183426, exon 6 of 32)	5460.0	NM_001359636	216161.0	Mm.262102	NM_183426	ENSMUSG00000035673	Sbno2	BC019206|F730040C21|Sno|Stno	strawberry notch 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56897870-3	chr17	56897766	56897966	+	822.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022328, intron 6 of 11)	intron (NM_022328, intron 6 of 11)	22233.0	NM_030141	78625.0	Mm.160106	NM_030141	ENSMUSG00000024209	1700061G19Rik	1700026H02|AI507598	RIKEN cDNA 1700061G19 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-60284585-2	chr14	60284485	60284685	+	991.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144843, intron 4 of 13)	L1_Mur3|LINE|L1	19380.0	NM_144843	219135.0	Mm.247007	NM_144843	ENSMUSG00000021987	Mtmr6	4022440C11Rik|AI428804|AU041072	myotubularin related protein 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-19564952-2	chr19	19564852	19565052	+	568.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-453756.0	NM_001043354	225998.0	Mm.234641	NM_146095	ENSMUSG00000036192	Rorb	Nr1f2|RZR-beta|RZRB|Rorbeta|hstp	RAR-related orphan receptor beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-138096678-2	chr1	138096578	138096778	+	685.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001268286, intron 10 of 28)	Lx3_Mus|LINE|L1	78448.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141228705-4	chr7	141228631	141228831	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081118)	promoter-TSS (NM_001081118)	-57.0	NM_001081118	101471.0	Mm.248656	NM_207211	ENSMUSG00000038611	Phrf1	AA673488	PHD and ring finger domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-30629437-2	chr14	30629337	30629537	+	645.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3229.0	NM_011103	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-36695851-7	chr5	36695760	36695960	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001081232, exon 1 of 9)	5' UTR (NM_001081232, exon 1 of 9)	161.0	NM_001081232	320661.0	Mm.26480	NM_177221	ENSMUSG00000029190	D5Ertd579e	9030221A05Rik|A930018H20Rik|Kiaa0232	DNA segment, Chr 5, ERATO Doi 579, expressed	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167070770-2	chr2	167070670	167070870	+	761.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5477.0	NR_028540	100217443.0		NR_028540		Snord12	MBII-99	small nucleolar RNA, C/D box 12	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-14801011-4	chr14	14800907	14801107	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19808.0	NM_001195229	674895.0	Mm.317563	NM_001034865	ENSMUSG00000042567	Nek10	Gm282	NIMA (never in mitosis gene a)- related kinase 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-122573811-2	chr2	122573691	122573891	+	802.0	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	37486.0	NM_025961	67092.0	Mm.29975	NM_025961	ENSMUSG00000027199	Gatm	1810003P21Rik|AI314789|AT	glycine amidinotransferase (L-arginine:glycine amidinotransferase)	protein-coding	0.586050204830927	0.669790970800315	0.931585960591656	0.622910093782649	2.1424947538219	0.67546105252719	2.739811314836	1.47181616144145	4.79672968795397	0.00147943808137223	0.0267861641352675
Merged-chr6-97384415-1	chr6	97384315	97384515	+	546.0	f1_c57bl6.idr	intron (NM_145148, intron 6 of 23)	ORR1F|LTR|ERVL-MaLR	74871.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101127604-2	chr15	101127504	101127704	+	748.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001277259)	promoter-TSS (NM_001277259)	-918.0	NM_001277258	11482.0	Mm.279542	NM_009612	ENSMUSG00000000530	Acvrl1	AI115505|AI427544|Acvrlk1|Alk1	activin A receptor, type II-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-109420460-2	chr4	109420360	109420560	+	987.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145948, intron 2 of 17)	intron (NM_001145948, intron 2 of 17)	4813.0	NM_001145948	230603.0	Mm.33091	NM_153392	ENSMUSG00000028555	Ttc39a	4922503N01Rik	tetratricopeptide repeat domain 39A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-92107440-4	chr5	92107278	92107478	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359197, intron 1 of 10)	B2_Mm2|SINE|B2	-23634.0	NM_001080795	23881.0	Mm.290530	NM_011816	ENSMUSG00000029405	G3bp2	AA409541|E430034L04Rik|G3BP|mKIAA0660	GTPase activating protein (SH3 domain) binding protein 2	protein-coding	2.22289519133092	1.39261026216252	2.15799354460648	2.09673934631414	1.86485674603419	2.99822584502064	2.64333470479494	2.73263181804391	1.3759776197018	0.11908018103588	0.541133408551742
Merged-chr8-122507900-2	chr8	122507800	122508000	+	598.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037298, intron 2 of 50)	intron (NM_001037298, intron 2 of 50)	31757.0	NR_152823	66965.0	Mm.482288	NM_153775	ENSMUSG00000049482	Ctu2	2310061F22Rik|C16orf84|Ncs2	cytosolic thiouridylase subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19241296-2	chr7	19241196	19241396	+	671.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_207525, intron 1 of 1)	PB1D10|SINE|Alu	12907.0	NM_207525	403187.0	Mm.239583	NM_207525	ENSMUSG00000052214	Opa3	D630048P19Rik|Gm1425|Gm472	optic atrophy 3	protein-coding	-0.472499084996647	-0.577769841501818	-0.932280005509563	-0.934409331640792	-0.937410007762487	-0.920698152219871	-0.93167041520348	-0.934037691524213	-2.90038409914852	0.344376840976206	1
Merged-chr19-3626850-2	chr19	3626793	3626993	+	799.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_008513, intron 7 of 22)	intron (NM_008513, intron 7 of 22)	-51144.0	NM_028999	52036.0	Mm.284686	NM_028999	ENSMUSG00000024908	Ppp6r3	4930528G08Rik|9130026N02Rik|D19Bwg1430e|D19Ertd703e|Pp6r3|Ppcs3|Pptcs3|Sapl|Saps3|mKIAA1558	protein phosphatase 6, regulatory subunit 3	protein-coding	1.4554057372312	1.31652964866618	0.608335301562759	0.602637380135477	1.06818574600325	0.617436680113581	0.933287730060529	0.603630962196781	-1.32647134432284	0.437620536470262	0.908612234382228
Merged-chr8-46914147-2	chr8	46914047	46914247	+	705.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72740.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-108707531-2	chr6	108707431	108707631	+	556.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB4|LINE|L1	-46597.0	NR_104577	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35823075-4	chr17	35822967	35823167	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008027)	promoter-TSS (NM_008027)	-290.0	NM_008027	14251.0	Mm.2931	NM_008027	ENSMUSG00000059714	Flot1	reggie-2	flotillin 1	protein-coding	4.45101851536855	3.59200068730605	4.56590280331547	5.00618660964772	4.87880968053728	4.64054869917024	5.60847401142221	4.89079555767165	0.677726854650119	0.0889761416073771	0.459874410818671
Merged-chr11-11684212-2	chr11	11684112	11684312	+	668.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1713.0	NM_009578	22778.0	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-11510667-2	chr2	11510567	11510767	+	893.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177758, intron 1 of 14)	ID_B1|SINE|B4	-8577.0	NM_001177757	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-129008590-4	chr5	129008488	129008688	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007941)	promoter-TSS (NM_007941)	-16.0	NM_007941	13852.0	Mm.260716	NM_007941	ENSMUSG00000029428	Stx2	AW538950|Epim|G1-536-1|Syn-2|repro34	syntaxin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-92147763-3	chr9	92147668	92147868	+	716.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45168.0	NM_001195693	100504689.0	Mm.464262	NM_001195693	ENSMUSG00000095654	Plscr5	331000	phospholipid scramblase family, member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59776069-3	chr15	59775959	59776159	+	735.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18900.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	-1.17367364971587	-1.14665061133654	-1.15856004380685	-1.16834280623128	-1.17310571790619	-1.14406978763884	-0.42938571406771	-1.16659169643457	2.89727187181404	0.396361616615464	1
Merged-chr19-37550471-4	chr19	37550368	37550568	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175353)	promoter-TSS (NM_175353)	50.0	NM_175353	107371.0	Mm.24865	NM_175353	ENSMUSG00000053799	Exoc6	4833405E05Rik|AW413330|C430002C19|Sec15|Sec15l1|hbd|msec15	exocyst complex component 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106666832-4	chr11	106666707	106666907	+	935.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305158, intron 13 of 14)	intron (NM_001305158, intron 13 of 14)	48474.0	NM_001305158	18613.0	Mm.343951	NM_008816	ENSMUSG00000020717	Pecam1	C85791|Cd31|PECAM-1|Pecam	platelet/endothelial cell adhesion molecule 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75164974-4	chr11	75164870	75165070	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001002764)	TTS (NM_001002764)	3182.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-106392198-2	chr1	106392098	106392298	+	630.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_133821, exon 17 of 17)	exon (NM_133821, exon 17 of 17)	154433.0	NR_106164	102466254.0		NR_106164	ENSMUSG00000098344	Mir3473f	Gm27846|mmu-mir-3473f	microRNA 3473f	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44851096-4	chr7	44850981	44851181	+	809.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253920, intron 1 of 4)	intron (NM_001253920, intron 1 of 4)	1074.0	NM_001253920	67605.0	Mm.148007	NM_026270	ENSMUSG00000011096	Akt1s1	1110012J22Rik|AI227026|Lobe|Lobel|PRAS40	AKT1 substrate 1 (proline-rich)	protein-coding	1.90987709483229	1.07282658047276	1.04570890980947	2.60103336742812	1.92752876321388	1.07878546660759	1.70113314307467	2.54945830331758	0.203265801566592	0.868136929938017	0.998431161219273
Merged-chr6-124804981-2	chr6	124804881	124805081	+	842.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3680.0	NM_001306051	14794.0	Mm.261906	NM_013539	ENSMUSG00000038451	Spsb2	AI461677|C9|Grcc9|SSB2	splA/ryanodine receptor domain and SOCS box containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-49047340-6	chr7	49047230	49047430	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111016, intron 2 of 38)	intron (NM_001111016, intron 2 of 38)	88257.0	NM_001111016	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-178019699-2	chr2	178019599	178019799	+	799.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45-int|LTR|ERVK	-3585.0	NM_001177400	626848.0	Mm.422604	NM_001177399	ENSMUSG00000074519	Zfp971	Etohi1	zinc finger protein 971	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-60388974-2	chr10	60388874	60389074	+	746.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252635, intron 30 of 68)	(CA)n|Simple_repeat|Simple_repeat	-10752.0	NM_001164374	100302688.0	Mm.444135	NM_001164374	ENSMUSG00000090439	Gm17455	-	predicted gene, 17455	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-92363343-3	chr5	92363234	92363434	+	975.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_038116)	promoter-TSS (NR_038116)	-38.0	NR_038116	56066.0	Mm.131723	NM_019494	ENSMUSG00000060183	Cxcl11	Cxc11|H174|I-tac|Ip9|Itac|Scyb11|Scyb9b|b-R1|betaR1	chemokine (C-X-C motif) ligand 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-118595389-4	chr7	118595294	118595494	+	997.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001331204, intron 2 of 2)	intron (NM_001331204, intron 2 of 2)	-1903.0	NM_001105252	74424.0	Mm.11068	NM_028930	ENSMUSG00000030650	Tmc5	4932443L08Rik|AU016085	transmembrane channel-like gene family 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-96338257-4	chr10	96338145	96338345	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	112038.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-74372910-2	chr1	74372810	74373010	+	559.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A1|LTR|ERVL-MaLR	-2293.0	NM_013612	18173.0	Mm.2913	NM_013612	ENSMUSG00000026177	Slc11a1	Bcg|Ity|Ity1|Lsh|Nramp|Nramp1|ity	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-64189071-2	chr2	64188971	64189171	+	667.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus4|LINE|L1	-91033.0	NM_001267847	60344.0	Mm.130769	NM_021716	ENSMUSG00000075324	Fign	fi|fidget	fidgetin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-50079031-4	chr17	50078945	50079145	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181397, intron 4 of 9)	intron (NM_181397, intron 4 of 9)	111452.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127164259-2	chr7	127164159	127164359	+	679.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	-26436.0	NM_001037810	20737.0	Mm.283714	NM_009259	ENSMUSG00000051457	Spn	A630014B01Rik|Cd43|Galgp|Ly-48|Ly48	sialophorin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-32486541-4	chr19	32486465	32486665	+	895.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010799, intron 1 of 4)	CpG	796.0	NM_010799	17330.0	Mm.255116	NM_010799	ENSMUSG00000024896	Minpp1	AA408516	multiple inositol polyphosphate histidine phosphatase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-75120240-2	chr15	75120164	75120364	+	701.916626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-8293.0	NM_001099217	100041546.0	Mm.482110	NM_001099217	ENSMUSG00000022584	Ly6c2	Ly-6C.2|Ly-6C2	lymphocyte antigen 6 complex, locus C2	protein-coding	0.0419054333950862	0.249413890057149	0.613984621395355	0.0489273352955674	0.311599230860335	0.0598804179332413	0.0543678390778738	0.677815089954741	0.297632476605089	0.886536607159604	1
Merged-chr19-11803610-3	chr19	11803507	11803707	+	759.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011502, intron 1 of 10)	intron (NM_011502, intron 1 of 10)	15796.0	NM_001286543	20908.0	Mm.272264	NM_011502	ENSMUSG00000041488	Stx3	Syn-3	syntaxin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-128579380-2	chr4	128579264	128579464	+	591.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30734.0	NM_177758	269585.0	Mm.153291	NM_177758	ENSMUSG00000061894	Zscan20	C130001F22|Zfp31|Zkscan20	zinc finger and SCAN domains 20	protein-coding	0.447260697044176	1.12137660927384	1.2694960949622	0.912321322814299	0.607058504543422	0.476223648696346	0.660380335961612	0.638641528205411	-2.2362354783343	0.17343745544135	1
Merged-chr16-34111418-4	chr16	34111315	34111515	+	932.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177357, intron 34 of 59)	L1MB3|LINE|L1	-144377.0	NM_009471	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-94160613-4	chr11	94160535	94160735	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50819.0	NM_009427	22057.0	Mm.259673	NM_009427	ENSMUSG00000037573	Tob1	Tob|Trob	transducer of ErbB-2.1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-67176967-4	chr15	67176921	67177121	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009177)	promoter-TSS (NM_009177)	-139.0	NM_009177	20442.0	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	6.00282353794474	6.26275957312361	6.58008099517916	5.45003433006416	5.82324948089985	5.92132507357371	6.47480128563239	6.09386222967672	-0.0318433158746229	0.905602461556282	0.998431161219273
Merged-chr6-90515222-3	chr6	90515130	90515330	+	883.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35563.0	NM_001356412	107747.0	Mm.30035	NM_027406	ENSMUSG00000030088	Aldh1l1	1810048F20Rik|FDH|Fthfd|Neut2	aldehyde dehydrogenase 1 family, member L1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141309363-4	chr7	141309289	141309489	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016874, intron 10 of 11)	PB1D10|SINE|Alu	17383.0	NM_007878	13491.0	Mm.41075	NM_007878	ENSMUSG00000025496	Drd4	AW125663|D4R|Drd-4	dopamine receptor D4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-42967099-4	chr5	42966985	42967185	+	900.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-266378.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-5802495-4	chr18	5802396	5802596	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	209849.0	NM_001360981	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	4.84879756454395	4.34471918642166	4.54197171152302	4.91283312113409	5.31250382974615	3.34847596839219	4.71755401457699	4.58454112887902	-0.016998341178443	0.968528921201969	0.998431161219273
Merged-chr14-96760555-1	chr14	96760455	96760655	+	573.0	f1_c57bl6.idr	Intergenic	MERV1_I-int|LTR|ERV1	-241521.0	NM_053105	93688.0	Mm.308735	NM_053105	ENSMUSG00000022076	Klhl1	mKIAA1490	kelch-like 1	protein-coding	0.538175795348551	1.61518502228359	1.34503868958722	1.06014769175329	1.21920022988629	0.578681833343499	0.566523283471976	0.555975483839988	-1.91493588645627	0.249623565454652	0.747873365654632
Merged-chr14-70971607-3	chr14	70971551	70971751	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302094, intron 6 of 7)	intron (NM_001302094, intron 6 of 7)	81544.0	NM_001302094	14586.0	Mm.32619	NM_008115	ENSMUSG00000022103	Gfra2	-	glial cell line derived neurotrophic factor family receptor alpha 2	protein-coding	1.57186237490484	2.77054644093195	1.43699727469716	2.92074753515762	2.87528747783811	4.14360857935755	3.76873840296399	2.598673805678	1.96811287967005	0.0140223059013235	0.138582888141745
Merged-chr7-31174702-2	chr7	31174602	31174802	+	832.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER20C_Mm|LTR|ERVK	12344.0	NR_046062	100038516.0	Mm.387223	NR_046062	ENSMUSG00000100985	Gm10640	EG668322	predicted gene 10640	ncRNA	-0.603458002041371	-0.738088407246316	-0.0661235921399274	-0.743967556228619	-0.599562569206666	-0.73733960557007	-0.740676400539901	-0.743520617267033	-2.30017262415266	0.398604370769471	1
Merged-chr11-117654141-1	chr11	117654041	117654241	+	1000.0	f0_balb.idr	promoter-TSS (NM_198022)	promoter-TSS (NM_198022)	-148.0	NM_198022	217351.0	Mm.40272	NM_198022	ENSMUSG00000025571	Tnrc6c	9930033H14Rik|mKIAA1582	trinucleotide repeat containing 6C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-17703979-2	chr10	17703879	17704079	+	691.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Charlie19a|DNA|hAT-Charlie	-19249.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46305890-2	chr8	46305790	46305990	+	894.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11219.0	NM_173789	234219.0	Mm.145631	NM_173789	ENSMUSG00000047171	Helt	A830086M02|Hesl|Heslike|Mgn|megane	helt bHLH transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80786939-4	chr7	80786832	80787032	+	994.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016721, intron 2 of 37)	intron (NM_016721, intron 2 of 37)	16399.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-11006915-4	chr16	11006827	11007027	+	908.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1971.0	NR_040518	100043147.0	Mm.489001	NR_040518	ENSMUSG00000097056	Gm4262	-	predicted gene 4262	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-34011139-4	chr1	34011037	34011237	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133833)	promoter-TSS (NM_133833)	-688.0	NM_133833	13518.0	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-79043226-2	chr15	79043092	79043292	+	728.083374	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001161712)	TTS (NM_001161712)	1307.0	NM_015738	14429.0	Mm.390805	NM_015738	ENSMUSG00000114755	Galr3	Galnr3	galanin receptor 3	protein-coding	0.360749812274899	0.0843954077148811	1.08048138022602	0.0714424068650874	0.694024936054161	0.0860293736043182	0.0787211547200459	0.07243511659027	-1.23983380246565	0.55929580718954	1
Merged-chr11-115291073-3	chr11	115290945	115291145	+	627.233337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178035, intron 2 of 5)	intron (NM_178035, intron 2 of 5)	6501.0	NM_178035	328035.0	Mm.21995	NM_178035	ENSMUSG00000044788	Fads6	BC044804	fatty acid desaturase domain family, member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-106248503-1	chr9	106248403	106248603	+	624.0	f1_c57bl6.idr	promoter-TSS (NM_001291835)	promoter-TSS (NM_001291835)	-549.0	NM_020559	11655.0	Mm.290578	NM_020559	ENSMUSG00000032786	Alas1	ALAS|ALAS-N|Alas-1|Alas-h	aminolevulinic acid synthase 1	protein-coding	3.06350946178842	2.79890044555978	2.6991317284754	1.21346928384672	2.3084643562851	1.2948088581978	1.2550557883006	2.87576568959504	-0.965926271154155	0.368409752098238	0.862916999449085
Merged-chr4-120033155-4	chr4	120033046	120033246	+	919.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010657, intron 2 of 8)	CpG	-128060.0	NM_007902	13615.0	Mm.284855	NM_007902	ENSMUSG00000028635	Edn2	ET-2|PPET2|VIC	endothelin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-54653702-4	chr14	54653589	54653789	+	998.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001085472)	promoter-TSS (NM_001085472)	-4.0	NM_019567	56215.0	Mm.297078	NM_019567	ENSMUSG00000022185	Acin1	2610036I19Rik|2610510L13Rik|Acinus|Acn|C79325|acinusL|acinusS|mKIAA0670	apoptotic chromatin condensation inducer 1	protein-coding	-0.593716227318794	-0.536021971022788	-0.291321280682509	-0.723603386473461	-0.726689912368235	-0.717898326804623	-0.72077739970618	-0.56687726628872	-2.05877104399074	0.427212280434016	1
Merged-chr17-56716995-4	chr17	56716913	56717113	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178926)	promoter-TSS (NM_178926)	-92.0	NM_178926	106639.0	Mm.37290	NM_178926	ENSMUSG00000054723	Vmac	AI662250	vimentin-type intermediate filament associated coiled-coil protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-24972664-1	chr16	24972564	24972764	+	555.0	f1_balb.idr	intron (NM_178665, intron 11 of 12)	intron (NM_178665, intron 11 of 12)	-86975.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-8624195-4	chr11	8624104	8624304	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 1 of 30)	RLTR20A4|LTR|ERVK	40331.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	3.48209274712947	2.52850032258488	3.98631532864946	3.03258962605422	3.31536186900983	3.14257640276015	3.78857967213673	3.04854725197904	-0.02965831144192	0.961306108425292	0.998431161219273
Merged-chr2-116166261-1	chr2	116166161	116166361	+	786.0	f1_balb.idr	Intergenic	RMER1A|Other|Other	-90165.0	NR_033447	69974.0	Mm.440293	NR_033447		2810405F15Rik	-	RIKEN cDNA 2810405F15 gene	ncRNA	0.970673582789277	0.47079189328708	0.461058337801015	0.453471122242221	0.873411989145346	1.37894603833426	0.463214669378754	1.1592229723843	2.10632854695779	0.229532496286661	1
Merged-chr4-16159747-4	chr4	16159657	16159857	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_138102, intron 1 of 11)	intron (NR_138102, intron 1 of 11)	3886.0	NM_138952	192656.0	Mm.112765	NM_138952	ENSMUSG00000041135	Ripk2	2210420D18Rik|CARD3|CARDIAK|CCK|D4Bwg0615e|RICK|RIP2	receptor (TNFRSF)-interacting serine-threonine kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-41826715-4	chr10	41826609	41826809	+	829.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162908, intron 1 of 9)	intron (NM_001162908, intron 1 of 9)	16135.0	NM_001162908	140742.0	Mm.139418	NM_001013370	ENSMUSG00000038332	Sesn1	1110002G11Rik|AU044290|Pa26|Sest1	sestrin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-16151739-2	chr1	16151639	16151839	+	702.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	45857.0	NM_133832	98711.0	Mm.274376	NM_133832	ENSMUSG00000025921	Rdh10	3110069K09Rik|4921506A21Rik|AI875664|AW549993|D1Ertd762e|m366Asp	retinol dehydrogenase 10 (all-trans)	protein-coding	0.0706934945361812	-0.177938761601348	0.378501520891107	-0.186170445991005	-0.191228529861778	-0.17689011862602	0.389465849418282	-0.18554473089045	-0.43414477102873	0.855448368978886	1
Merged-chr10-61069383-3	chr10	61069267	61069467	+	839.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19964.0	NM_025273	13180.0	Mm.39473	NM_025273	ENSMUSG00000020098	Pcbd1	Dcoh|Pcbd|Pcd|Phs	pterin 4 alpha carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-22081226-3	chr17	22081129	22081329	+	977.7222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	84748.0	NM_177596	210853.0	Mm.441622	NM_177596	ENSMUSG00000063383	Zfp947	6720451E15|EG210853|Gm4769	zinc finger protein 947	protein-coding	2.56539213361777	2.45219497734975	2.36321748326161	2.56201201658412	1.10439988153281	2.47169438054551	1.17781936791708	1.14859894807529	-2.12306997117074	0.0525326914725081	0.33513824661535
Merged-chr3-75299666-4	chr3	75299575	75299775	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-29597.0	NM_026460	67931.0	Mm.259446	NM_026460	ENSMUSG00000034139	Serpini2	Spi14	serine (or cysteine) peptidase inhibitor, clade I, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-75106636-2	chr8	75106576	75106776	+	636.5	f0_c57.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-2833.0	NM_001302540	17218.0	Mm.5048	NM_008566	ENSMUSG00000005410	Mcm5	AA617332|AI324988|AL033333|Cdc46|Mcmd5|P1-CDC46	minichromosome maintenance complex component 5	protein-coding	0.425374852686246	0.0852014482783068	0.0801025709608056	0.076180844434272	0.328245467068289	0.562998384328473	0.0812256256058011	0.589467353264336	1.85606085577893	0.374578950947276	1
Merged-chr9-21482806-2	chr9	21482706	21482906	+	578.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357721, intron 11 of 19)	ID_B1|SINE|B4	13758.0	NR_029585	387194.0		NR_029585	ENSMUSG00000065547	Mir199a-1	Mirn199|Mirn199a-1|mir-199a-1	microRNA 199a-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-17723545-1	chr10	17723445	17723645	+	1000.0	f0_c57.idr	intron (NM_010828, intron 1 of 1)	CpG	317.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-111553453-3	chr9	111553362	111553562	+	948.466675	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	114381.0	NM_172928	245038.0	Mm.26361	NM_172928	ENSMUSG00000032500	Dclk3	BC056929|C730036H08|Dcamkl3	doublecortin-like kinase 3	protein-coding	5.00963104306618	4.19753682600933	4.9990537598792	5.49426438954176	3.11510674836109	3.5478303455628	2.07908437407827	2.93344340587972	-2.68353216941983	9.86554722335101e-08	8.9221232853592e-06
Merged-chr7-25726158-4	chr7	25726083	25726283	+	996.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001360789, exon 12 of 15)	exon (NM_001360789, exon 12 of 15)	-7130.0	NM_028771	52132.0	Mm.278798	NM_028771	ENSMUSG00000002608	Ccdc97	1200014H14Rik|2810446P04Rik|AA545218|D7Ertd462e	coiled-coil domain containing 97	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-12575391-2	chr11	12575291	12575491	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVB5_1-I_MM-int|LTR|ERVK	-110431.0	NM_001282993	12808.0	Mm.22847	NM_172496	ENSMUSG00000020173	Cobl	-	cordon-bleu WH2 repeat	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69837254-2	chr11	69837154	69837354	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1271.0	NM_026982	69186.0	Mm.248772	NM_026982	ENSMUSG00000070394	Tmem256	1810027O10Rik|3110009M16Rik	transmembrane protein 256	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-189080994-1	chr1	189080894	189081094	+	632.5	f0_balb.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-73154.0	NR_153196	226823.0	Mm.209880	NM_172650	ENSMUSG00000026608	Kctd3	4930438A20Rik|9330185B06|E330032J19Rik|NY-REN-45	potassium channel tetramerisation domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-36360262-4	chr12	36360161	36360361	+	950.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-21189.0	NM_001289504	75847.0	Mm.261764	NM_178629	ENSMUSG00000043153	Ispd	4930579E17Rik|AV040780	isoprenoid synthase domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-39368932-2	chr10	39368832	39369032	+	628.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001122892)	promoter-TSS (NM_001122892)	-867.0	NM_001122892	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-98093418-4	chr15	98093318	98093518	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_144851, exon 1 of 18)	5' UTR (NM_144851, exon 1 of 18)	151.0	NM_144851	223870.0	Mm.384023	NM_144851	ENSMUSG00000033075	Senp1	2310046A20Rik|D15Ertd528e|E330036L07Rik|suPr-2	SUMO1/sentrin specific peptidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-80685564-2	chr18	80685464	80685664	+	591.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198429, intron 2 of 9)	RLTR20A4|LTR|ERVK	22609.0	NM_001164111	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-29496785-2	chr6	29496685	29496885	+	627.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001029985, intron 17 of 37)	intron (NM_001029985, intron 17 of 37)	11167.0	NM_001029985	333088.0	Mm.332961	NM_001029985	ENSMUSG00000059022	Kcp	AW060220|CRIM-2|Crim2|Gm793|KCP-1	kielin/chordin-like protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-59740402-2	chr17	59740302	59740502	+	596.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3C|LINE|L1	-727080.0	NM_026497	67993.0	Mm.36507	NM_026497	ENSMUSG00000024228	Nudt12	0610016O18Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-36915855-1	chr19	36915755	36915955	+	546.0	f0_c57.idr	Intergenic	Intergenic	3744.0	NM_028263	72514.0	Mm.41674	NM_028263	ENSMUSG00000047632	Fgfbp3	2610306H15Rik|Fgf-bp3	fibroblast growth factor binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-45954488-5	chr9	45954368	45954568	+	907.3666380000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_152206, exon 1 of 1)	non-coding (NR_152206, exon 1 of 1)	482.0	NR_152206	100101457.0	Mm.397964	NR_152206	ENSMUSG00000111329	A830035O19Rik	-	RIKEN cDNA A830035O19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-28649599-4	chr12	28649494	28649694	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_104608)	promoter-TSS (NR_104608)	-8.0	NR_104608	19819.0	Mm.10152	NM_011275	ENSMUSG00000020630	Rnaseh1	-	ribonuclease H1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-43283733-2	chr5	43283633	43283833	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177379, intron 9 of 10)	intron (NM_001177379, intron 9 of 10)	-48379.0	NR_028417	665934.0	Mm.381491	NR_028417	ENSMUSG00000085720	Gm7854	EG665934	predicted gene 7854	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-47023305-2	chr7	47023214	47023414	+	680.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER5|LTR|ERV1	-14900.0	NM_175318	101685.0	Mm.155687	NM_175318	ENSMUSG00000049516	Spty2d1	5830435K17Rik|AI852426|P16H6	SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-72466473-4	chr11	72466374	72466574	+	890.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153060, intron 2 of 12)	intron (NM_153060, intron 2 of 12)	8553.0	NM_001276383	216892.0	Mm.212812	NM_153060	ENSMUSG00000040447	Spns2	-	spinster homolog 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122993210-2	chr8	122993110	122993310	+	880.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 1 of 12)	intron (NM_001081379, intron 1 of 12)	49074.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-144318513-4	chr1	144318404	144318604	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69400.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-3969270-2	chr5	3969170	3969370	+	749.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_194462, intron 8 of 47)	intron (NM_194462, intron 8 of 47)	41084.0	NM_194462	100986.0	Mm.46044	NM_194462	ENSMUSG00000040407	Akap9	5730481H23Rik|AKAP-9|AKAP450|AW545847|C79026|G1-448-15|PRKA9|mKIAA0803|mei2-5|repro12	A kinase (PRKA) anchor protein (yotiao) 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-21996849-3	chr16	21996744	21996944	+	736.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1302.0	NM_001289581	239759.0	Mm.33192	NM_153404	ENSMUSG00000044626	Liph	C130037N08Rik|D16Wsu119e|H06|Lpdlr|P3|PLA1B|lpd1|lpd2|mPA-PLA1	lipase, member H	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-105199532-3	chr1	105199425	105199625	+	870.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-156482.0	NR_151539	100504568.0	Mm.321153	NR_151538	ENSMUSG00000097482	Gm17634	-	predicted gene, 17634	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122923656-1	chr8	122923556	122923756	+	544.0	f0_balb.idr	intron (NM_001081379, intron 2 of 12)	intron (NM_001081379, intron 2 of 12)	75282.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	2.2822367484697	1.57090824151507	2.16489783771776	2.70948217098721	2.21399804451558	1.32133449978853	2.05285062160616	2.11490261491274	-0.685293965714656	0.48018024662075	0.928595475837891
Merged-chr2-97314848-1	chr2	97314748	97314948	+	562.0	f1_c57bl6.idr	intron (NM_001289742, intron 5 of 7)	Lx5b|LINE|L1	-152809.0	NM_001289744	241568.0	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3911404-1	chr12	3911304	3911504	+	545.0	f1_c57bl6.idr	3' UTR (NM_001271753, exon 23 of 23)	3' UTR (NM_001271753, exon 23 of 23)	19660.0	NM_153743	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-70746928-4	chr17	70746841	70747041	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347411, intron 9 of 14)	Charlie9|DNA|hAT-Charlie	99836.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	3.47702492241371	3.63635335799328	4.6259713675367	4.36899839289419	4.32794173173163	4.70914249016684	4.65861656889725	4.76841407962616	0.660965447992758	0.120364435557634	0.544681605916704
Merged-chr4-128621526-4	chr4	128621448	128621648	+	803.395874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2929.0	NM_205823	384059.0	Mm.331901	NM_205823	ENSMUSG00000062545	Tlr12	Gm1365|Tlr11	toll-like receptor 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167758777-2	chr2	167758677	167758877	+	851.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	67600.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-32246176-2	chr16	32246076	32246276	+	862.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_173439, intron 1 of 2)	intron (NM_173439, intron 1 of 2)	849.0	NM_173439	268882.0	Mm.256137	NM_173439	ENSMUSG00000035764	Fbxo45	2610017J04Rik|AI463119|BC026799	F-box protein 45	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-144772230-4	chr5	144772121	144772321	+	941.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081362, intron 3 of 70)	intron (NM_001081362, intron 3 of 70)	3429.0	NM_001081362	100683.0	Mm.273570	NM_001081362	ENSMUSG00000045482	Trrap	AI481500	transformation/transcription domain-associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-151614783-4	chr1	151614736	151614936	+	810.525024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022018, intron 1 of 13)	intron (NM_022018, intron 1 of 13)	43463.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-142623877-2	chr3	142623777	142623977	+	723.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_105802)	promoter-TSS (NR_105802)	69.0	NR_105802	102465200.0		NR_105802	ENSMUSG00000098871	Mir6381	Gm27963|mmu-mir-6381	microRNA 6381	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-50229928-2	chr11	50229828	50230028	+	738.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145926, intron 1 of 14)	intron (NM_145926, intron 1 of 14)	-2317.0	NR_105884	102466765.0		NR_105884	ENSMUSG00000098474	Mir6919	Gm27889|mmu-mir-6919	microRNA 6919	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34985400-2	chr17	34985300	34985500	+	587.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001204273, intron 5 of 5)	intron (NM_001204273, intron 5 of 5)	3270.0	NM_030597	27756.0	Mm.165735	NM_030597	ENSMUSG00000007050	Lsm2	D17H6S56E-2|D17H6S56E2|Dmapl|Dmpkap|G7b|Sm-X5|SmX5|snRNP	LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56153914-4	chr17	56153806	56154006	+	971.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8585.0	NM_025566	66443.0	Mm.2312	NM_025566	ENSMUSG00000044469	Tnfaip8l1	2600017J23Rik|TIPE1	tumor necrosis factor, alpha-induced protein 8-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-8051376-4	chr17	8051263	8051463	+	802.604187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033442, intron 2 of 3).2	intron (NM_001033442, intron 2 of 3).2	49865.0	NM_001033442	381059.0	Mm.490353	NM_001033442	ENSMUSG00000095720	Gm1604b	Gm1604	predicted gene 1604b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-37022856-4	chr17	37022796	37022996	+	810.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010814, intron 1 of 7)	ID4_|SINE|ID	502.0	NM_010814	17441.0	Mm.210857	NM_010814	ENSMUSG00000076439	Mog	B230317G11Rik	myelin oligodendrocyte glycoprotein	protein-coding	1.53132632582637	2.41566002341306	1.44973089035599	2.26135235650786	2.66781875422187	2.3239041083057	1.20643977574299	1.7842580453271	0.325152227984222	0.754931243317768	0.998431161219273
Merged-chr15-88862421-1	chr15	88862321	88862521	+	1000.0	f0_c57.idr	5' UTR (NM_145478, exon 1 of 6)	5' UTR (NM_145478, exon 1 of 6)	227.0	NM_145478	223775.0	Mm.400129	NM_145478	ENSMUSG00000035828	Pim3	BC026639|Kid1	proviral integration site 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-8214140-1	chr17	8214040	8214240	+	593.0	f0_balb.idr	Intergenic	Intergenic	-21903.0	NM_001190333	12458.0	Mm.8007	NM_009835	ENSMUSG00000040899	Ccr6	CC-CKR-6|CCR-6|Cmkbr6|KY411	chemokine (C-C motif) receptor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-60747942-7	chr18	60747823	60748023	+	925.142883	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001348146, intron 1 of 6)	intron (NM_001348146, intron 1 of 6)	497.0	NM_001348100	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99329269-2	chr15	99329169	99329369	+	552.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310623, intron 5 of 24)	intron (NM_001310623, intron 5 of 24)	25985.0	NM_001348256	54614.0	Mm.358668	NM_018786	ENSMUSG00000023007	Prpf40b	2610317D23Rik|Hypc	pre-mRNA processing factor 40B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-60788292-2	chr18	60788192	60788392	+	638.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2B|LTR|ERVL	13696.0	NM_020600	20044.0	Mm.43778	NM_020600	ENSMUSG00000024608	Rps14	2600014J02Rik|AL023078	ribosomal protein S14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-45490907-2	chr5	45490807	45491007	+	710.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2467.0	NM_024434	66988.0	Mm.286830	NM_024434	ENSMUSG00000039682	Lap3	2410015L10Rik|AA410100|LAP-3|Lap|Lapep|Pep-7|Pep-S|Pep7|Peps	leucine aminopeptidase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-50544295-2	chr6	50544195	50544395	+	824.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22179.0	NM_007808	13063.0	Mm.35389	NM_007808	ENSMUSG00000063694	Cycs	-	cytochrome c, somatic	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-135601721-2	chr7	135601621	135601821	+	578.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001316680, intron 2 of 20)	intron (NM_001316680, intron 2 of 20)	-4107.0	NM_001316679	19267.0	Mm.945	NM_011212	ENSMUSG00000041836	Ptpre	PTPe|PTPepsilon|RPTPepsilon	protein tyrosine phosphatase, receptor type, E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-60817570-2	chr18	60817470	60817670	+	701.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011552, intron 21 of 24)	intron (NM_011552, intron 21 of 24)	5494.0	NR_039567	100628611.0		NR_039567	ENSMUSG00000093327	Mir5107	mir-5107|mmu-mir-5107|mu-mir-5107	microRNA 5107	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-102929700-4	chr14	102929585	102929785	+	940.31665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	52947.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165851265-2	chr2	165851171	165851371	+	609.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_027230, intron 4 of 23)	intron (NM_027230, intron 4 of 23)	6902.0	NM_001252585	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	-0.340893614635666	-0.329002302399227	-0.332912686356798	-0.0450173434015577	0.28497546807518	-0.328118886639166	-0.332051442398294	-0.0406878910000009	1.78800834175812	0.478679463486897	1
Merged-chr3-115992258-4	chr3	115992135	115992335	+	966.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023214, intron 3 of 10)	intron (NM_023214, intron 3 of 10)	12333.0	NR_130332	100316705.0		NR_130332	ENSMUSG00000089261	Mir669n	mmu-mir-669n	microRNA 669n	ncRNA	3.67508724760596	4.12163052229935	2.90585547257949	5.40719383747226	3.70623104583634	3.55976547714729	4.08201343060895	3.89476417994383	-0.713604044267354	0.21002550276467	0.69949048545273
Merged-chr18-60805889-4	chr18	60805813	60806013	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042605, intron 1 of 8)	intron (NM_001042605, intron 1 of 8)	2064.0	NM_010545	16149.0	Mm.439737	NM_010545	ENSMUSG00000024610	Cd74	CLIP|DHLAG|HLADG|Ia-GAMMA|Ii	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	protein-coding	5.38532159260613	5.5102020208194	6.04430753598753	5.07887810470163	6.17170525933152	5.75659979127845	6.39423296472125	5.72299351524629	0.553518586643626	0.0499644303306246	0.325918757760149
Merged-chr8-70664864-2	chr8	70664767	70664967	+	809.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-5129.0	NM_023217	66522.0	Mm.154906	NM_023217	ENSMUSG00000056204	Pgpep1	2810003H13Rik|Gm19458|PAP-I|PGP|PGP-I|PGPI|Pcp	pyroglutamyl-peptidase I	protein-coding	2.02036083379654	1.50076731108382	2.08076852253792	2.12980117618929	1.38041720741326	2.48957662170888	1.66379286256019	2.14089144764321	0.0970586488607505	0.922208592116602	0.998431161219273
Merged-chr14-20729591-2	chr14	20729491	20729691	+	648.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_010811, exon 3 of 15)	exon (NM_010811, exon 3 of 15)	4971.0	NM_010811	17423.0	Mm.4084	NM_010811	ENSMUSG00000039308	Ndst2	Mndns|NDST-2	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-23684160-2	chr11	23684060	23684260	+	645.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033654, intron 4 of 17)	B3A|SINE|B2	18184.0	NM_028304	74467.0	Mm.29536	NM_028304	ENSMUSG00000020280	Pus10	2810013G11Rik|4933435A13Rik|AU014648|C77560|Ccdc139	pseudouridylate synthase 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-31058936-4	chr17	31058843	31059043	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009593, intron 1 of 14)	intron (NM_009593, intron 1 of 14)	1249.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-91734814-4	chr12	91734711	91734911	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 3 of 6)	intron (NM_175367, intron 3 of 6)	51625.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-39946201-2	chr6	39946101	39946301	+	565.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360978, intron 1 of 3)	intron (NM_001360978, intron 1 of 3)	74765.0	NM_001360978	434008.0	Mm.53915	NM_001004182	ENSMUSG00000057716	Tmem178b	A930009E05Rik|EG434008|Gm5567	transmembrane protein 178B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-25483419-5	chr9	25483209	25483409	+	900.1533199999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026189, exon 2 of 8)	exon (NM_026189, exon 2 of 8)	1712.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120298904-2	chr11	120298804	120299004	+	618.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48509.0	NR_105900	102465564.0		NR_105900	ENSMUSG00000098955	Mir6935	Gm27344|mmu-mir-6935	microRNA 6935	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127937613-2	chr10	127937513	127937713	+	743.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	39078.0	NM_027301	70061.0	Mm.158320	NM_027301	ENSMUSG00000040127	Sdr9c7	1810054F20Rik|Rdh20|Rdhs|SDR-O|Sdro	4short chain dehydrogenase/reductase family 9C, member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-102191036-3	chr11	102190964	102191164	+	696.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175935, intron 1 of 5)	intron (NM_175935, intron 1 of 5)	1365.0	NM_175935	68401.0	Mm.22385	NM_175935	ENSMUSG00000034793	G6pc3	0710001K01Rik|AU019276|AU045429|AV128920|AW545836|UGRP	glucose 6 phosphatase, catalytic, 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-42000535-2	chr19	42000435	42000635	+	709.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145500, intron 1 of 2)	intron (NM_145500, intron 1 of 2)	18772.0	NM_145500	226122.0	Mm.22948	NM_145500	ENSMUSG00000025171	Ubtd1	BC016129	ubiquitin domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-92364615-1	chr8	92364515	92364715	+	598.0	f1_balb.idr	Intergenic	Intergenic	6819.0	NM_018826	54352.0	Mm.101153	NM_018826	ENSMUSG00000031737	Irx5	-	Iroquois homeobox 5	protein-coding	1.19105006150132	0.795284720607605	1.42625444603542	1.67191604966031	0.757976543905957	1.61574573269121	0.992109153981328	1.12802236174594	-0.583429732119791	0.673335091332326	0.99440487726309
Merged-chr17-45711704-2	chr17	45711604	45711804	+	739.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	22140.0	NM_028164	72240.0	Mm.482897	NM_028164	ENSMUSG00000094690	1600014C23Rik	-	RIKEN cDNA 1600014C23 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-54048982-4	chr6	54048885	54049085	+	983.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163640, intron 1 of 12)	intron (NM_001163640, intron 1 of 12)	9053.0	NM_001163640	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115430131-2	chr5	115430031	115430231	+	761.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008629, intron 2 of 14)	CpG-11404	446.0	NM_008629	17690.0	Mm.5077	NM_008629	ENSMUSG00000054256	Msi1	Msi1h|Musahi1|m-Msi-1	musashi RNA-binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56480342-2	chr17	56480242	56480442	+	689.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3862.0	NM_011218	19280.0	Mm.258771	NM_011218	ENSMUSG00000013236	Ptprs	AL022616|PTP|PTP-NU3|PTPNU-3|PTPsigma|Ptpt9|R-PTP-S|RPTPsigma	protein tyrosine phosphatase, receptor type, S	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-3514776-2	chr8	3514676	3514876	+	601.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015801)	promoter-TSS (NM_015801)	-608.0	NM_001359122	50767.0	Mm.23085	NM_015801	ENSMUSG00000004565	Pnpla6	AI661849|MSws|Nte	patatin-like phospholipase domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-138983262-3	chr1	138983201	138983401	+	687.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181347, intron 1 of 20)	intron (NM_181347, intron 1 of 20)	5644.0	NR_108103	78229.0	Mm.437838	NR_108103	ENSMUSG00000104900	4930596I21Rik	-	RIKEN cDNA 4930596I21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28333769-2	chr17	28333669	28333869	+	559.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001098226, intron 9 of 12)	intron (NM_001098226, intron 9 of 12)	5204.0	NM_001357628	19896.0	Mm.336955	NM_011287	ENSMUSG00000037805	Rpl10a	CsA-19|Nedd6	ribosomal protein L10A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-172490453-4	chr1	172490354	172490554	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033608, intron 5 of 20)	intron (NM_033608, intron 5 of 20)	8137.0	NM_033608	93842.0	Mm.214530	NM_033608	ENSMUSG00000037995	Igsf9	644ETD8|Dasm1|Kiaa1355-hp|NRT1|Ncaml|mKIAA1355	immunoglobulin superfamily, member 9	protein-coding	1.55520781758965	2.02345094454885	0.799976378817124	1.65869515822395	2.44101397267599	0.826898424161602	0.804916269433161	0.785465972980352	-0.260830649853121	0.857260330526773	0.998431161219273
Merged-chr19-24900315-2	chr19	24900221	24900421	+	764.833374	f1_balb.idr|f1_c57bl6.idr	exon (NM_008022, exon 1 of 1)	exon (NM_008022, exon 1 of 1)	988.0	NM_008022	14237.0	Mm.377080	NM_008022	ENSMUSG00000051490	Foxd4	FREAC5|Fkh2	forkhead box D4	protein-coding	3.36923884764048	3.2188975073472	3.11043672241338	3.65750398110251	2.15950512867863	1.99490765486184	3.2271534686928	3.36405559396384	-0.883765034679142	0.19608830297386	0.67745443837728
Merged-chr11-115989852-1	chr11	115989752	115989952	+	676.0	f1_balb.idr	intron (NM_001005608, intron 17 of 39)	intron (NM_001005608, intron 17 of 39)	3863.0	NR_152190	100038636.0	Mm.450138	NR_152190		B230344G16Rik	-	RIKEN cDNA B230344G16 gene	ncRNA	-0.287681661689139	-0.435030080358246	-0.440235021091852	-0.444278345784782	-0.283163614802457	-0.433862268692845	0.587994879861407	-0.443570225496533	2.98414745231868	0.219858449271405	1
Merged-chr15-58872622-4	chr15	58872550	58872750	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026642)	promoter-TSS (NM_026642)	1.0	NM_026642	68260.0	Mm.278805	NM_026642	ENSMUSG00000037085	Trmt12	4632406N01Rik|AI449275|Tyw2	tRNA methyltranferase 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-80073025-3	chr15	80072921	80073121	+	870.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5558.0	NR_028282	100302601.0		NR_028282	ENSMUSG00000077734	Snord83b	MBII-10	small nucleolar RNA, C/D box 83B	snoRNA	1.80892783723554	1.09852796049862	2.46099554503362	2.22159037307473	1.93172185157794	1.10421290730595	2.31147733454515	1.05570486609876	-0.699430119663676	0.562758512398696	0.960362415684079
Merged-chr2-3703952-4	chr2	3703850	3704050	+	968.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9508.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-13686804-2	chr17	13686704	13686904	+	813.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73737.0	NR_151731	17356.0	Mm.59167	NM_010806	ENSMUSG00000068036	Afdn	5033403D15Rik|AF6|Af-6|Afadin|Gm314|I-afadin|Mllt4|S-afadin	afadin, adherens junction formation factor	protein-coding	0.130636495115952	0.179631055274989	1.61820937823307	0.151931833367446	0.133878451712457	0.183024260340235	1.71610495356714	0.154107542330577	0.179169713085192	0.956485536206151	0.998431161219273
Merged-chr10-58224547-2	chr10	58224447	58224647	+	834.8000490000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8128.0	NM_001081954	664783.0	Mm.482575	NM_001081954		Dux	AW822073|Dux4|Duxbl|EG664783	double homeobox	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-125491491-4	chr7	125491375	125491575	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026330)	promoter-TSS (NM_026330)	67.0	NM_001360659	67711.0	Mm.4467	NM_026330	ENSMUSG00000030750	Nsmce1	2510027N19Rik	NSE1 homolog, SMC5-SMC6 complex component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-106452384-1	chr9	106452284	106452484	+	763.0	f0_balb.idr	3' UTR (NM_029631, exon 4 of 4)	3' UTR (NM_029631, exon 4 of 4)	-1454.0	NM_021567	59092.0	Mm.286394	NM_021567	ENSMUSG00000023495	Pcbp4	1200003L19Rik|AlphaCP-4	poly(rC) binding protein 4	protein-coding	-0.102710456072259	-0.227459592512032	-0.23174160574589	-0.235037179912499	0.46464042674144	-0.226492715264088	-0.0561809658243507	0.0630022131549715	2.88438018813085	0.203747082286784	1
Merged-chr5-96807419-4	chr5	96807340	96807540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013470, intron 2 of 12)	intron (NM_013470, intron 2 of 12)	14055.0	NM_013470	11745.0	Mm.7214	NM_013470	ENSMUSG00000029484	Anxa3	Anx3	annexin A3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-39461778-1	chr18	39461678	39461878	+	643.0	f0_balb.idr	intron (NM_008173, intron 1 of 7)	intron (NM_008173, intron 1 of 7)	25467.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	1.74376316188662	1.7767873332569	1.815434528126	1.0961671898924	1.84068342786018	0.923580751495433	1.12991102829973	0.892072390681439	-1.23589792661196	0.342423182174424	0.843489544525844
Merged-chr7-100500713-6	chr7	100500500	100500700	+	948.0750119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011671)	TTS (NM_011671)	7242.0	NM_011671	22228.0	Mm.171378	NM_011671	ENSMUSG00000033685	Ucp2	Slc25a8|UCP 2|UCPH	uncoupling protein 2 (mitochondrial, proton carrier)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-13415615-3	chr13	13415516	13415716	+	917.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21986.0	NM_010917	18073.0	Mm.4691	NM_010917	ENSMUSG00000005397	Nid1	A630025O17|Nid|entactin|entactin-1|nidogen-1	nidogen 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-42183762-2	chr19	42183662	42183862	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164531, intron 7 of 11)	intron (NM_001164531, intron 7 of 11)	13195.0	NM_001164531	319740.0	Mm.287359	NM_177319	ENSMUSG00000018820	Zfyve27	2210011N02Rik|9530077C24Rik|AI426636|AI593546|AI835681	zinc finger, FYVE domain containing 27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94381817-3	chr10	94381719	94381919	+	860.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 1 of 4)	intron (NM_001359762, intron 1 of 4)	69870.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-88446512-4	chr6	88446417	88446617	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023060)	promoter-TSS (NM_023060)	22.0	NM_023060	65967.0	Mm.333237	NM_023060	ENSMUSG00000033216	Eefsec	Selb|mSelB|sec	eukaryotic elongation factor, selenocysteine-tRNA-specific	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-95810689-4	chr15	95810590	95810790	+	943.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 1 of 19)	intron (NM_175344, intron 1 of 19)	19382.0	NR_155277	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134235335-1	chr6	134235235	134235435	+	541.0	f1_c57bl6.idr	intron (NM_001303102, intron 5 of 8)	intron (NM_001303102, intron 5 of 8)	-160994.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-71360920-2	chr10	71360820	71361020	+	673.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027184, intron 1 of 5)	B3|SINE|B2	13157.0	NM_027184	69718.0	Mm.245867	NM_027184	ENSMUSG00000060733	Ipmk	2410017C19Rik|AA408208|Impk	inositol polyphosphate multikinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-152793484-4	chr2	152793374	152793574	+	947.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009743, intron 2 of 2)	intron (NM_009743, intron 2 of 2)	35015.0	NR_149254	12048.0	Mm.238213	NM_009743	ENSMUSG00000007659	Bcl2l1	Bcl(X)L|Bcl-XL|Bcl2l|BclX|bcl-x|bcl2-L-1	BCL2-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-131976083-4	chr3	131975984	131976184	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-109208.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	1.25052186189426	0.875158103513152	2.04142157312271	0.855601056044333	1.2610419321792	0.877647742428586	2.0555069452399	0.857088320458745	0.0411946987220898	0.978440113653427	0.998431161219273
Merged-chr15-76472713-2	chr15	76472615	76472815	+	623.5	f0_balb.idr|f1_balb.idr	intron (NM_013481, intron 2 of 15)	intron (NM_013481, intron 2 of 15)	4554.0	NM_013481	12181.0	Mm.4283	NM_013481	ENSMUSG00000022557	Bop1	AU020183|AW146150|D18861|Erb1p|Kiaa0124|mKIAA0124	block of proliferation 1	protein-coding	2.5348196457815	3.33123421905897	2.09442438458173	2.02514630771446	3.64246320174173	2.41218849039728	4.08214933713386	4.05451562869258	1.78003881391533	0.0110036045376146	0.116284128516413
Merged-chr14-118089477-4	chr14	118089379	118089579	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37233.0	NM_010024	13190.0	Mm.19987	NM_010024	ENSMUSG00000022129	Dct	DT|TRP-2|TRP2|Tyrp-2|Tyrp2|slaty|slt	dopachrome tautomerase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-128592335-4	chr1	128592239	128592439	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009911)	promoter-TSS (NM_009911)	-40.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	5.86193735951622	5.58805702804607	6.47133128682002	5.4356051083617	5.66682348179317	5.19938745214271	6.06462467302707	4.57701546080694	-0.465601061907239	0.168300223971463	0.634264819554251
Merged-chr11-58301925-3	chr11	58301836	58302036	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr	Intergenic	Intergenic	-5133.0	NM_182996	103836.0	Mm.41440	NM_182996	ENSMUSG00000037243	Zfp692	AI746306|AI839920|Zfp692-ps|Znf692	zinc finger protein 692	protein-coding	5.85435757003532	5.73189013789428	5.56773013131479	5.75362654099033	5.3081512191967	6.66206406520717	5.94882287596779	6.07377545138377	0.373454658606751	0.190150586458296	0.668954168251044
Merged-chr14-103481109-2	chr14	103481009	103481209	+	622.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1E1|LTR|ERVL-MaLR	-32232.0	NM_022886	64929.0	Mm.244003	NM_022886	ENSMUSG00000022123	Scel	9230114I02Rik	sciellin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36259464-2	chr1	36259364	36259564	+	862.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13961.0	NM_153408	214854.0	Mm.389110	NM_153408	ENSMUSG00000047180	Neurl3	2010300P06Rik|Lincr	neuralized E3 ubiquitin protein ligase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-29979073-2	chr13	29978973	29979173	+	654.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010093, intron 1 of 6)	intron (NM_010093, intron 1 of 6)	5318.0	NM_001289920	13557.0	Mm.268356	NM_010093	ENSMUSG00000016477	E2f3	E2F3b|E2f3a	E2F transcription factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-93576049-3	chr15	93575949	93576149	+	673.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033217, intron 1 of 7)	intron (NM_001033217, intron 1 of 7)	19842.0	NM_001033217	106042.0	Mm.150314	NM_001033217	ENSMUSG00000036158	Prickle1	1110058P22Rik|AW215793|Prickle|b2b019Clo|mpk1	prickle planar cell polarity protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-6171596-4	chr7	6171507	6171707	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146024)	promoter-TSS (NM_001146024)	-906.0	NM_028316	72667.0	Mm.274089	NM_028316	ENSMUSG00000044876	Zfp444	2810031J10Rik|6230401O10Rik|mFLJ00134	zinc finger protein 444	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-32535709-2	chr11	32535609	32535809	+	748.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 1 of 18)	B2_Mm2|SINE|B2	2443.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	-2.18138529563533	-2.15523716995652	-2.1631445789866	-2.16963996020037	-2.05513010215571	-2.15352360143315	-2.16135451490766	-2.16847729006863	0.759018020146679	0.829933115115583	1
Merged-chr4-101670025-4	chr4	101669929	101670129	+	756.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22246.0	NM_175036	230514.0	Mm.4756	NM_175036	ENSMUSG00000035212	Leprot	LEPR|OB-RGRP|Obrgrp|VPS55	leptin receptor overlapping transcript	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-54247792-2	chr13	54247692	54247892	+	563.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55659.0	NR_153432	15466.0	Mm.57243	NM_008286	ENSMUSG00000034987	Hrh2	H2R|HH2R	histamine receptor H2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-144931993-4	chr5	144931883	144932083	+	938.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038627, intron 1 of 17)	intron (NM_001038627, intron 1 of 17)	33847.0	NM_001038627	75788.0	Mm.27735	NM_029438	ENSMUSG00000038780	Smurf1	4930431E10Rik|mKIAA1625	SMAD specific E3 ubiquitin protein ligase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55806930-3	chr19	55806833	55807033	+	612.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001331146, intron 4 of 14)	intron (NM_001331146, intron 4 of 14)	65123.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-11112788-2	chr8	11112688	11112888	+	613.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-104358.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129600611-2	chr2	129600511	129600711	+	865.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355160, intron 1 of 7)	L2a|LINE|L2	5149.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	-1.8429182434137	-1.8129848525291	-1.82203695700074	-1.54461076807193	-1.84081697472045	-1.81102322372834	-1.81998775896484	-1.82814164409203	-1.43114970378833	0.684630132144154	1
Merged-chr3-107038339-4	chr3	107038208	107038408	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008418)	TTS (NM_008418)	-1196.0	NR_033498	229694.0	Mm.347584	NM_173787	ENSMUSG00000056145	AI504432	A230102G19	expressed sequence AI504432	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-122901213-4	chr9	122901116	122901316	+	922.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2030.0	NM_001353989	666257.0	Mm.390242	NM_001353989		Gm8008	EG666257|Znf660	predicted gene 8008	protein-coding	4.99360241706931	4.96264289093619	4.5619729278752	5.26720265563037	3.2916778652542	4.36049628588987	3.1330440416013	3.1495580506912	-1.81316590293825	4.48781147343016e-05	0.00160252268030402
Merged-chr17-33643143-2	chr17	33643043	33643243	+	698.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001002842, intron 4 of 9)	intron (NM_001002842, intron 4 of 9)	5048.0	NR_028279	378460.0	Mm.272606	NM_001002842	ENSMUSG00000032739	Pram1	AY665714	PML-RAR alpha-regulated adaptor molecule 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-7345763-2	chr19	7345663	7345863	+	908.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3903.0	NM_001080388	13728.0	Mm.258986	NM_007928	ENSMUSG00000024969	Mark2	EMK-1|Emk|Par-1|Par-1b	MAP/microtubule affinity regulating kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46887510-4	chr8	46887415	46887615	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	C-rich|Low_complexity|Low_complexity	-99372.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-15960939-1	chr3	15960839	15961039	+	917.0	f0_balb.idr	intron (NM_001081687, intron 3 of 3)	intron (NM_001081687, intron 3 of 3)	45393.0	NM_001081687	381484.0	Mm.217376	NM_001081687	ENSMUSG00000078780	Gm5150	-	predicted gene 5150	protein-coding	2.90692390328073	3.65087208500247	1.58867062204502	2.05813918467965	3.41321105236025	4.54523601701246	3.70061518092372	3.44418639546141	1.65821416323546	0.018469091563365	0.169950601265707
Merged-chr11-34058375-4	chr11	34058273	34058473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010696, intron 3 of 20)	MTD|LTR|ERVL-MaLR	11445.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-62880949-2	chr17	62880849	62881049	+	719.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_010109, intron 1 of 3)	CpG	368.0	NM_207654	13640.0	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-55951183-4	chr16	55951133	55951333	+	999.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME2z|LINE|L1	-15042.0	NM_024218	68193.0	Mm.29221	NM_024218	ENSMUSG00000098274	Rpl24	0610008L05Rik|Bst	ribosomal protein L24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-83875274-4	chr3	83875191	83875391	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MMERVK9C_I-int|LTR|ERVK	-33683.0	NM_011905	24088.0	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89367628-2	chr3	89367528	89367728	+	681.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2375.0	NM_029974	77772.0	Mm.164013	NM_029974	ENSMUSG00000042672	Dcst1	A330106H01Rik	DC-STAMP domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-125052354-4	chr5	125052242	125052442	+	914.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011424, intron 18 of 46)	intron (NM_011424, intron 18 of 46)	48867.0	NM_028443	73121.0	Mm.296138	NM_028443	ENSMUSG00000037962	Rflna	3110032G18Rik|Fam101a|cfm|cfm2	refilin A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-125669938-4	chr8	125669836	125670036	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_028908, exon 1 of 1)	exon (NM_028908, exon 1 of 1)	118.0	NM_028908	74393.0	Mm.41709	NM_028908	ENSMUSG00000050930	Map10	4933403G14Rik|AI835009|mKIAA1383	microtubule-associated protein 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-89745005-4	chr10	89744886	89745086	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029166)	promoter-TSS (NM_029166)	-5.0	NM_029166	75089.0	Mm.268922	NM_029166	ENSMUSG00000019951	Uhrf1bp1l	2010319N22Rik|4930506D01Rik|AA589495|C80672|E030041M21Rik|mKIAA0701	UHRF1 (ICBP90) binding protein 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32888681-2	chr2	32888581	32888781	+	626.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146119, intron 1 of 13)	intron (NM_146119, intron 1 of 13)	12547.0	NM_146119	227737.0	Mm.301646	NM_146119	ENSMUSG00000026796	Fam129b	9130404D14Rik	family with sequence similarity 129, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46868897-4	chr8	46868803	46869003	+	760.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-117984.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-88267905-4	chr1	88267797	88267997	+	849.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172505, intron 4 of 4)	intron (NM_172505, intron 4 of 4)	1511.0	NR_040291	78605.0	Mm.384762	NR_040291		6430706D22Rik	-	RIKEN cDNA 6430706D22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-91591822-2	chr12	91591722	91591922	+	668.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1335.0	NM_175335	83602.0	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-36502492-2	chr16	36502392	36502592	+	803.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013803, intron 4 of 6)	intron (NM_013803, intron 4 of 6)	-47100.0	NM_025288	20863.0	Mm.136573	NM_025288	ENSMUSG00000054905	Stfa3	Stf3	stefin A3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-145250342-4	chr6	145250239	145250439	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021284)	promoter-TSS (NM_021284)	-108.0	NM_021284	16653.0	Mm.383182	NM_021284	ENSMUSG00000030265	Kras	AI929937|K-Ras|K-Ras 2|K-ras|Ki-ras|Kras-2|Kras2|c-K-ras|c-Ki-ras|p21B|ras	Kirsten rat sarcoma viral oncogene homolog	protein-coding	5.6211571406297	5.94803985454758	5.73387074793011	5.86756191637096	6.03059015311686	5.85771811651703	6.23214102617724	6.2952227986648	0.356324844019957	0.126610734716963	0.55689342891744
Merged-chr9-66920769-2	chr9	66920669	66920869	+	584.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-1064.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129335444-4	chr4	129335366	129335566	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025970)	promoter-TSS (NM_025970)	-96.0	NM_009030	19646.0	Mm.12145	NM_009030	ENSMUSG00000057236	Rbbp4	RBAP48|mRbAp48	retinoblastoma binding protein 4, chromatin remodeling factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-113611797-2	chr13	113611697	113611897	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_130796, intron 1 of 1)	intron (NM_130796, intron 1 of 1)	6767.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-62922833-3	chr14	62922730	62922930	+	747.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175546, intron 3 of 11)	intron (NM_175546, intron 3 of 11)	57288.0	NR_105860	102465311.0		NR_105860	ENSMUSG00000098858	Mir6541	Gm27311|mmu-mir-6541	microRNA 6541	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-37771120-4	chr3	37770992	37771192	+	891.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-46732.0	NM_198657	381438.0	Mm.490549	NM_198657	ENSMUSG00000058174	Gm5148	EG381438	predicted gene 5148	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-95666367-4	chr1	95666276	95666476	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159745, intron 1 of 3)	intron (NM_001159745, intron 1 of 3)	1218.0	NM_009183	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-123292442-2	chr7	123292342	123292542	+	597.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001122641, intron 16 of 18)	intron (NM_001122641, intron 16 of 18)	77473.0	NM_001122643	70497.0	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-174673750-2	chr2	174673650	174673850	+	565.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001099328, intron 3 of 4)	intron (NM_001099328, intron 3 of 4)	30216.0	NM_001099328	100043757.0	Mm.48711	NM_001099328	ENSMUSG00000050600	Zfp831	-	zinc finger protein 831	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-90586981-2	chr3	90586881	90587081	+	579.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355600)	promoter-TSS (NM_001355600)	29.0	NM_001355600	20197.0	Mm.440044	NM_011310	ENSMUSG00000001021	S100a3	S100E	S100 calcium binding protein A3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-45252619-2	chr16	45252494	45252694	+	785.0	f0_balb.idr|f1_balb.idr	3' UTR (NM_177584, exon 6 of 6)	3' UTR (NM_177584, exon 6 of 6)	28257.0	NM_177584	208154.0	Mm.38199	NM_177584	ENSMUSG00000052013	Btla	A630002H24	B and T lymphocyte associated	protein-coding	2.20119848601066	2.1050692886338	1.20557833662611	1.9682881818116	2.55617083840133	1.24705473964242	1.88744116591186	3.17254846300296	1.122639675247	0.278275744591629	0.781792858737504
Merged-chr10-111367483-2	chr10	111367383	111367583	+	791.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	68804.0	NM_027914	71769.0	Mm.45256	NM_027914	ENSMUSG00000035759	Bbs10	1300007O09Rik|AI452285	Bardet-Biedl syndrome 10 (human)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127632123-4	chr10	127632009	127632209	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10877.0	NM_009284	20852.0	Mm.121721	NM_009284	ENSMUSG00000002147	Stat6	-	signal transducer and activator of transcription 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-65164355-4	chr6	65164263	65164463	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19633.0	NM_019455	54486.0	Mm.410688	NM_019455	ENSMUSG00000029919	Hpgds	H-PGDS|Ptgds2	hematopoietic prostaglandin D synthase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141368560-2	chr7	141368460	141368660	+	674.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3450.0	NR_033532	320871.0	Mm.475463	NM_177280	ENSMUSG00000086844	B230206H07Rik	-	RIKEN cDNA B230206H07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-22866510-4	chr17	22866396	22866596	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177358, intron 1 of 5)	intron (NM_177358, intron 1 of 5)	638.0	NM_177358	240041.0	Mm.328828	NM_177358	ENSMUSG00000059142	Zfp945	A630033E08Rik|C730040L01Rik	zinc finger protein 945	protein-coding	5.45687480510975	6.06910824725437	5.5034090926396	5.11565544053852	6.16169083167076	6.65423392953952	5.9193458192597	5.42177254134354	0.591421455570028	0.0502862826787371	0.326880198969073
Merged-chr15-83030428-2	chr15	83030328	83030528	+	726.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271413)	promoter-TSS (NM_001271413)	-478.0	NM_001271413	74039.0	Mm.32584	NM_028728	ENSMUSG00000058099	Nfam1	4921501M20Rik|Cnaip	Nfat activating molecule with ITAM motif 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-101639738-2	chr14	101639638	101639838	+	713.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001168592, intron 1 of 2)	intron (NM_001168592, intron 1 of 2)	733.0	NM_001033132	66200.0	Mm.250474	NM_001033132	ENSMUSG00000075486	Commd6	1110059J08Rik|1700063H17Rik	COMM domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122970250-3	chr5	122970132	122970332	+	675.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003953, intron 4 of 22)	intron (NM_001003953, intron 4 of 22)	18867.0	NM_001003953	30841.0	Mm.86406	NM_013910	ENSMUSG00000029475	Kdm2b	Cxxc2|Fbl10|Fbxl10|Jhdm1b|PCCX2	lysine (K)-specific demethylase 2B	protein-coding	-0.536074528372749	-0.524788319225501	-0.528492444483358	-0.5313459469584	0.0307557989653078	-0.523952490228114	-0.527676014881988	0.00481505895087453	3.46454061671619	0.207129974887316	1
Merged-chr3-101597903-4	chr3	101597795	101597995	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144900, intron 1 of 22)	intron (NM_144900, intron 1 of 22)	6812.0	NM_144900	11928.0	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101983272-7	chr11	101983148	101983348	+	906.9761960000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028207, intron 1 of 2)	intron (NM_028207, intron 1 of 2)	1543.0	NM_028207	72349.0	Mm.196295	NM_028207	ENSMUSG00000003518	Dusp3	2210015O03Rik|5031436O03Rik|T-DSP11|VHR	dual specificity phosphatase 3 (vaccinia virus phosphatase VH1-related)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-153443874-3	chr1	153443771	153443971	+	835.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033162, intron 6 of 9)	B4A|SINE|B4	18662.0	NM_001033162	71836.0	Mm.49460	NM_001033162	ENSMUSG00000042708	Shcbp1l	1700012A16Rik	Shc SH2-domain binding protein 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-46441077-2	chr17	46440977	46441177	+	635.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2600.0	NM_144856	108114.0	Mm.387538	NM_144856	ENSMUSG00000067144	Slc22a7	NLT|OAT2	solute carrier family 22 (organic anion transporter), member 7	protein-coding	-0.125647759807227	-0.111071281646272	0.441522959681563	0.0413359488625076	-0.124739800914058	-0.109992105423898	0.452481923886784	0.0441704480868524	0.038593106546904	0.986042924655959	1
Merged-chr16-35905594-2	chr16	35905494	35905694	+	585.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MRLTR33|LTR|ERVK	-32876.0	NM_030253	80285.0	Mm.49074	NM_030253	ENSMUSG00000022906	Parp9	ARTD9|AW214463|BC003281|Bagl|Bal|PARP-9	poly (ADP-ribose) polymerase family, member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171051004-4	chr1	171050906	171051106	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010188)	TTS (NM_010188)	8388.0	NM_001356511	14131.0	Mm.22119	NM_010188	ENSMUSG00000059498	Fcgr3	CD16	Fc receptor, IgG, low affinity III	protein-coding	2.72648344300761	3.20976731441666	3.47201631849725	4.32379138469395	3.29811494571885	2.98652443389964	1.65527942270298	4.22809882881818	-0.339629346502136	0.641904116088574	0.982599433509505
Merged-chr13-51388280-3	chr13	51388158	51388358	+	800.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-20360.0	NM_010101	13610.0	Mm.136736	NM_010101	ENSMUSG00000067586	S1pr3	AI132464|Edg3|Lpb3|S1p3	sphingosine-1-phosphate receptor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-24432758-2	chr8	24432658	24432858	+	587.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6188.0	NM_026931	69068.0	Mm.25775	NM_026931	ENSMUSG00000056313	Tcim	1110065B09Rik|1810011O10Rik|AW121743|AW321058	transcriptional and immune response regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-49930359-4	chr16	49930263	49930463	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25467.0	NR_153658	100503490.0	Mm.72499	NR_153658		Gm19723	-	predicted gene, 19723	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55650536-2	chr19	55650436	55650636	+	670.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045318, intron 2 of 3)	intron (NR_045318, intron 2 of 3)	51668.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	1.2010330308399	1.7380931806499	0.625121374679656	0.613377553384031	1.21392757797614	1.75497010767569	0.62843580752093	0.615446378315762	0.040169410779876	0.979936035542334	0.998431161219273
Merged-chr4-127129165-2	chr4	127129065	127129265	+	571.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001099319, exon 3 of 3)	3' UTR (NM_001099319, exon 3 of 3)	3122.0	NM_001099319	100039968.0	Mm.392655	NM_001099319	ENSMUSG00000070737	Tmem35b	Gm12942|Zmym6nb	transmembrane protein 35B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-43416050-4	chr8	43415928	43416128	+	841.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-109019.0	NM_009556	22702.0	Mm.285848	NM_009556	ENSMUSG00000051176	Zfp42	Rex-1|Rex1|Zfp-42	zinc finger protein 42	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-8809375-2	chr19	8809275	8809475	+	847.4166869999999	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_027412, exon 4 of 4)	3' UTR (NM_027412, exon 4 of 4)	6845.0	NM_001098237	75291.0	Mm.23423	NM_133759	ENSMUSG00000071661	Zbtb3	4930563M09Rik	zinc finger and BTB domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-53436553-4	chr11	53436493	53436693	+	875.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008110, intron 1 of 1)	intron (NM_008110, intron 1 of 1)	3307.0	NM_008110	14566.0	Mm.9714	NM_008110	ENSMUSG00000018238	Gdf9	Gdf-9	growth differentiation factor 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-24263675-1	chr5	24263575	24263775	+	726.0	f1_balb.idr	Intergenic	B4A|SINE|B4	6147.0	NR_030454	735274.0		NR_030454	ENSMUSG00000106252	Mir684-1	Mirn684-1	microRNA 684-1	ncRNA	0.183877345158339	0.396639472625925	0.196801316946337	0.822233888175126	0.757288148640741	0.204500464748609	0.661880562100825	0.192795893919988	0.316988799572423	0.87352889307559	1
Merged-chr16-95943393-2	chr16	95943293	95943493	+	885.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14316.0	NR_040484	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80159243-4	chr10	80159183	80159383	+	983.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_021565)	TTS (NM_021565)	-8556.0	NM_007705	12696.0	Mm.17898	NM_007705	ENSMUSG00000045193	Cirbp	Cirp|R74941	cold inducible RNA binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-91372129-3	chr13	91371955	91372155	+	713.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045161, intron 2 of 2)	intron (NR_045161, intron 2 of 2)	16030.0	NR_045161	320297.0	Mm.375866	NR_045161	ENSMUSG00000097182	A830009L08Rik	-	RIKEN cDNA A830009L08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-127625479-4	chr3	127625383	127625583	+	953.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-7653.0	NM_009718	11924.0	Mm.42017	NM_009718	ENSMUSG00000027967	Neurog2	Atoh4|Math4A|bHLHa8|ngn-2|ngn2	neurogenin 2	protein-coding	2.43098938360351	2.58164440521674	2.76444038822371	3.43864118047451	3.10314751263336	3.29848018341656	2.90157580571653	3.09731372109058	0.418754508902678	0.525215911652379	0.948340152465298
Merged-chr5-134233358-4	chr5	134233276	134233476	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3751.0	NR_104383	17969.0	Mm.425296	NM_010876	ENSMUSG00000015950	Ncf1	NCF-47K|NOXO2|Ncf-1|p47-phox|p47<phox>|p47phox	neutrophil cytosolic factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-34307005-4	chr15	34306822	34307022	+	913.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358780, intron 1 of 18)	CpG	241.0	NM_016762	17181.0	Mm.396856	NM_016762	ENSMUSG00000022324	Matn2	Crtm2|matrilin-2	matrilin 2	protein-coding	1.04052784204929	0.277069966762474	0.268664016749882	0.851908863418846	0.252782179283394	0.278953524691906	1.11761549740751	0.263267425085468	-0.55275725068964	0.783420462851141	1
Merged-chr14-65593064-4	chr14	65592990	65593190	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253812)	promoter-TSS (NM_001253812)	22.0	NM_001253812	74195.0	Mm.29719	NM_028811	ENSMUSG00000022031	Elp3	2610507P14Rik|KAT9	elongator acetyltransferase complex subunit 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-103092405-4	chr9	103092313	103092513	+	950.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19661.0	NM_173781	270192.0	Mm.490252	NM_173781	ENSMUSG00000032549	Rab6b	9630015C03|AI844641|C330006L04Rik|D9Bwg0185e	RAB6B, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-10325739-3	chr10	10325642	10325842	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	146572.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-35721936-2	chr2	35721836	35722036	+	565.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001602, intron 11 of 13)	intron (NM_001001602, intron 11 of 13)	25204.0	NM_001290639	69601.0	Mm.29629	NM_001001602	ENSMUSG00000026883	Dab2ip	2310011D08Rik|AI480459|Aip1|mKIAA1743	disabled 2 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-44332529-3	chr16	44332523	44332723	+	845.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001159419, exon 1 of 26)	5' UTR (NM_001159419, exon 1 of 26)	215.0	NM_198034	320007.0	Mm.242144	NM_198034	ENSMUSG00000022696	Sidt1	AW045928|B830021E24Rik	SID1 transmembrane family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-27429334-1	chr19	27429234	27429434	+	672.0	f0_balb.idr	promoter-TSS (NR_027987)	promoter-TSS (NR_027987)	574.0	NM_177474	52874.0	Mm.261027	NM_177474	ENSMUSG00000041360	Pum3	1110069H02Rik|AA675048|D19Bwg1357e	pumilio RNA-binding family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-58471892-2	chr13	58471792	58471992	+	790.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68549.0	NM_001301341	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-41444540-3	chr3	41444444	41444644	+	867.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48655.0	NR_040385	78706.0	Mm.366094	NR_040385	ENSMUSG00000097639	Platr4	C430002E04Rik	pluripotency associated transcript 4	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-50762036-2	chr10	50761936	50762136	+	654.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198007, intron 34 of 41)	B1_Mur3|SINE|Alu	-133615.0	NM_011376	20464.0	Mm.4774	NM_011376	ENSMUSG00000019913	Sim1	bHLHe14|mSIM1	single-minded family bHLH transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-44920690-4	chr2	44920589	44920789	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59067.0	NM_172662	227835.0	Mm.314312	NM_172662	ENSMUSG00000036890	Gtdc1	E330008O22Rik	glycosyltransferase-like domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-155707058-2	chr4	155706958	155707158	+	664.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026899, intron 1 of 4)	intron (NM_026899, intron 1 of 4)	2243.0	NM_026899	68991.0	Mm.294770	NM_026899	ENSMUSG00000029038	Ssu72	1190002E22Rik|1500011L16Rik|2610101M12Rik	Ssu72 RNA polymerase II CTD phosphatase homolog (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-138982450-4	chr1	138982346	138982546	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181347, intron 1 of 20)	intron (NM_181347, intron 1 of 20)	4789.0	NR_108103	78229.0	Mm.437838	NR_108103	ENSMUSG00000104900	4930596I21Rik	-	RIKEN cDNA 4930596I21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-15983990-2	chr16	15983890	15984090	+	551.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355731, intron 7 of 18)	intron (NM_001355731, intron 7 of 18)	96704.0	NM_007679	12609.0	Mm.347407	NM_007679	ENSMUSG00000071637	Cebpd	c/EBPdelta	CCAAT/enhancer binding protein (C/EBP), delta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-41614431-2	chr7	41614331	41614531	+	564.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-19100.0	NM_001360675	67607.0	Mm.384626	NM_023363	ENSMUSG00000074165	Zfp788	2810426N06Rik|AI256342|AI605193	zinc finger protein 788	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-37851854-1	chr13	37851754	37851954	+	583.0	f0_balb.idr	intron (NM_001039188, intron 1 of 9)	intron (NM_001039188, intron 1 of 9)	24461.0	NM_001039188	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-161594828-4	chr1	161594732	161594932	+	985.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	100175.0	NM_183391	240873.0	Mm.276823	NM_183391	ENSMUSG00000066755	Tnfsf18	Gitrl|Tnlg2a	tumor necrosis factor (ligand) superfamily, member 18	protein-coding	3.4906560961473	3.12177826275469	4.04943161123801	3.03784761931885	3.19979037572082	3.94446557498077	4.91504074088363	3.95995756671665	0.927321522453715	0.0958886950257928	0.480564980333944
Merged-chr15-98516104-2	chr15	98516004	98516204	+	646.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3730.0	NR_034051	100217417.0	Mm.486440	NR_034051	ENSMUSG00000065336	Snora34	MBI-89	small nucleolar RNA, H/ACA box 34	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-56068149-3	chr9	56068047	56068247	+	859.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21829.0	NM_011193	19200.0	Mm.2534	NM_011193	ENSMUSG00000032322	Pstpip1	CD2BP1|def-2	proline-serine-threonine phosphatase-interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-50046083-7	chr16	50045987	50046187	+	998.1785890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045935, intron 1 of 3)	intron (NR_045935, intron 1 of 3)	26765.0	NR_045935	224180.0	Mm.146439	NM_175010		Gm4827	B130050K08|EG224180	predicted gene 4827	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-98867963-4	chr13	98867844	98868044	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178716, intron 7 of 23)	intron (NM_178716, intron 7 of 23)	23098.0	NM_001048267	238799.0	Mm.173286	NM_178716	ENSMUSG00000009470	Tnpo1	AU021749|D13Ertd688e|IPO2|Kpnb2|MIP|MIP1|TRN	transportin 1	protein-coding	1.77509248341762	2.29968636803458	2.47306268978584	2.40543849819493	2.6517618111977	2.68565517896419	2.09242636865947	2.61472372338358	0.61418916332759	0.448831248160258	0.915206885694556
Merged-chr5-96911727-4	chr5	96911638	96911838	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9534.0	NR_131152	666266.0	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	5.26977098455696	5.06096376247967	4.54297915205514	4.25405694447875	4.84377308038617	5.44622211049539	5.26188195564766	4.27574330224742	0.210320386633464	0.581610832919855	0.966599221005409
Merged-chr11-69993241-2	chr11	69993141	69993341	+	666.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_019749, intron 3 of 3)	B4|SINE|B4	1871.0	NM_019749	56486.0	Mm.272460	NM_019749	ENSMUSG00000018567	Gabarap	-	gamma-aminobutyric acid receptor associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-35693800-4	chr5	35693704	35693904	+	876.054199	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14024.0	NM_030127	78558.0	Mm.274255	NM_030127	ENSMUSG00000029096	Htra3	2210021K23Rik|9530081K03Rik|Prsp|Tasp	HtrA serine peptidase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-67124918-4	chr15	67124820	67125020	+	906.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009177, intron 3 of 8)	MIRc|SINE|MIR	51962.0	NM_009177	20442.0	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	2.60995565555637	2.94193123301887	2.07695524962389	2.36782014509412	2.73513881370782	3.99557453625545	3.07168589082403	3.14966348582384	1.40449468388383	0.0437931573288858	0.300360309621935
Merged-chr8-12756953-4	chr8	12756861	12757061	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001293667)	promoter-TSS (NM_001293667)	-55.0	NM_015804	50770.0	Mm.257837	NM_015804	ENSMUSG00000031441	Atp11a	4930558F19Rik|AU040868|Atpc1h|Ih	ATPase, class VI, type 11A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-95071407-2	chr8	95071307	95071507	+	784.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001042715, intron 10 of 17)	intron (NM_001042715, intron 10 of 17)	-9794.0	NM_028805	74187.0	Mm.28382	NM_028805	ENSMUSG00000031787	Katnb1	2410003J24Rik|KAT	katanin p80 (WD40-containing) subunit B 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-41765006-6	chr15	41764905	41765105	+	981.861084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152565, intron 3 of 17)	intron (NR_152565, intron 3 of 17)	-23990.0	NM_001358976	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-86801362-3	chr12	86801278	86801478	+	961.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	67009.0	NM_001195767	627607.0	Mm.341880	NM_001195767	ENSMUSG00000059114	Lrrc74a	EG627607|Gm6772|Lrrc74	leucine rich repeat containing 74A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-99208640-4	chr4	99208541	99208741	+	970.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175029, intron 1 of 10)	RLTR49|LTR|ERVK	14494.0	NM_001145967	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	3.64802292937904	2.9886116958447	3.9884351762775	3.53044901012523	2.78426397544076	2.71502658345427	3.90849818994523	2.6804671721532	-0.708283225707028	0.253027041948512	0.750696945919449
Merged-chr5-96854652-2	chr5	96854540	96854740	+	990.416626	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	61255.0	NM_013470	11745.0	Mm.7214	NM_013470	ENSMUSG00000029484	Anxa3	Anx3	annexin A3	protein-coding	1.46988327595036	4.41978868310128	2.66883201877867	1.62151342948003	5.22569124729104	4.8650852132139	5.78035496895034	5.96736030475419	3.05876992939744	0.0312655514284325	0.243692563472283
Merged-chr5-114380668-7	chr5	114380613	114380813	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026145)	promoter-TSS (NM_026145)	93.0	NR_138602	117146.0	Mm.28792	NM_054093	ENSMUSG00000029577	Ube3b	AI449831|AU020130	ubiquitin protein ligase E3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-90589111-3	chr5	90589027	90589227	+	729.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252661, intron 12 of 13)	intron (NM_001252661, intron 12 of 13)	27918.0	NM_001252661	622307.0	Mm.389654	NM_001252661	ENSMUSG00000070690	5830473C10Rik	Arg|Gm17754	RIKEN cDNA 5830473C10 gene	protein-coding	3.06944340578168	2.40813071783498	3.31740444819138	3.15312435491972	2.67135689017802	3.28811334418978	2.65077634846729	2.90754775715565	-0.241807188722709	0.714673993274784	0.998431161219273
Merged-chr1-171038124-4	chr1	171038028	171038228	+	928.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	19202.0	NM_144559	246256.0	Mm.251254	NM_144559	ENSMUSG00000059089	Fcgr4	4833442P21Rik|CD16-2|FcgRIV|FcgammaRIV|Fcgr3a|Fcrl3	Fc receptor, IgG, low affinity IV	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47925530-2	chr17	47925430	47925630	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001110824)	promoter-TSS (NM_001110824)	-898.0	NM_001110825	74123.0	Mm.240062	NM_028767	ENSMUSG00000023991	Foxp4	1200010K03Rik|2310007G05Rik|mFKHLA	forkhead box P4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-114612359-2	chr5	114612259	114612459	+	734.625	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001004180, exon 3 of 3)	3' UTR (NM_001004180, exon 3 of 3)	44108.0	NM_001004180	433940.0	Mm.194212	NM_001004180	ENSMUSG00000041930	Fam222a	-	family with sequence similarity 222, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-50437457-3	chr11	50437310	50437510	+	662.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6299.0	NM_172557	216724.0	Mm.390400	NM_172557	ENSMUSG00000020375	Rufy1	3000002E04Rik|Rabip4|ZFYVE12	RUN and FYVE domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102395786-4	chr12	102395669	102395869	+	897.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011175, exon 12 of 14)	exon (NM_011175, exon 12 of 14)	44044.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-60706454-4	chr10	60706351	60706551	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9961.0	NM_023370	22295.0	Mm.440327	NM_023370	ENSMUSG00000012819	Cdh23	4930542A03Rik|USH1D|ahl|ahl1|bob|bus|mdfw|nmf112|nmf181|nmf252|sals|v	cadherin 23 (otocadherin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3098379-2	chr12	3098279	3098479	+	768.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-137412.0	NR_015551	74173.0	Mm.309774	NM_028796	ENSMUSG00000079179	Rab10os	1700012B15Rik|1810036A22Rik	RAB10, member RAS oncogene family, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-78754351-2	chr11	78754251	78754451	+	718.583374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2622.0	NM_197989	69109.0	Mm.341420	NM_197989	ENSMUSG00000049489	Fam58b	1810009O10Rik|Ccnq|Fam58a	family with sequence similarity 58, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-51264638-4	chr11	51264550	51264750	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358281)	promoter-TSS (NM_001358281)	-988.0	NM_001358281	193286.0	Mm.80975	NM_177567	ENSMUSG00000045942	BC049762	4930503F14	cDNA sequence BC049762	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-100147909-1	chr10	100147809	100148009	+	584.0	f0_balb.idr	Intergenic	Intergenic	132088.0	NM_013598	17311.0	Mm.45124	NM_013598	ENSMUSG00000019966	Kitl	Clo|Con|Gb|Kitlg|Mgf|SCF|SF|SLF|Sl|blz|contrasted	kit ligand	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-108098678-4	chr6	108098586	108098786	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33641.0	NM_178391	74729.0	Mm.56539	NM_178391	ENSMUSG00000034639	Setmar	5830404F24Rik|Etet2	SET domain without mariner transposase fusion	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-86920954-4	chr5	86920866	86921066	+	877.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152811, intron 3 of 5)	intron (NM_152811, intron 3 of 5)	5537.0	NM_152811	71773.0	Mm.26741	NM_152811	ENSMUSG00000035836	Ugt2b1	1300012D20Rik	UDP glucuronosyltransferase 2 family, polypeptide B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-125473401-4	chr1	125473292	125473492	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37665.0	NM_001205385	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-112397572-4	chr13	112397381	112397581	+	690.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66589.0	NM_010560	16195.0	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-5860088-1	chr5	5859988	5860188	+	708.5	f0_balb.idr	Intergenic	RLTR28|LTR|ERVL	-110771.0	NM_027399	70358.0	Mm.85429	NM_027399	ENSMUSG00000015652	Steap1	2410007B19Rik|Prss24|Steap	six transmembrane epithelial antigen of the prostate 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-148681712-3	chr4	148681626	148681826	+	746.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38409.0	NM_001085505	230909.0	Mm.332067	NM_001085505	ENSMUSG00000070577	Gm572	b2b1167Clo	predicted gene 572	protein-coding	2.19648842471166	2.85919944884627	1.98031019626901	2.07191175011675	2.10512484768373	2.48697675700408	2.70054872811046	1.32274023393274	-0.159996558046125	0.862581283153539	0.998431161219273
Merged-chr12-34586575-1	chr12	34586475	34586675	+	570.0	f0_balb.idr	intron (NM_001271386, intron 3 of 27)	intron (NM_001271386, intron 3 of 27)	-57686.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-99641132-4	chr12	99641005	99641205	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13131.0	NR_045288	73457.0	Mm.383439	NR_045288	ENSMUSG00000100211	1700064M15Rik	-	RIKEN cDNA 1700064M15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-107323438-4	chr11	107323361	107323561	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359616, intron 2 of 8)	intron (NM_001359616, intron 2 of 8)	-134080.0	NM_001161329	68979.0	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141619584-2	chr4	141619495	141619695	+	659.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145987)	promoter-TSS (NM_145987)	-962.0	NR_151462	213989.0	Mm.34891	NM_145987	ENSMUSG00000043085	Tmem82	-	transmembrane protein 82	protein-coding	1.4515482663926	1.12708093751867	3.08746296421686	1.07009174405125	2.01363767049489	1.84724267886387	2.31409738401218	2.00764072279069	0.0400779818702906	0.971574779661699	0.998431161219273
Merged-chr15-33186540-4	chr15	33186440	33186640	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018755, intron 2 of 8)	L1_Mus4|LINE|L1	103411.0	NM_176073	54381.0	Mm.158251	NM_018755	ENSMUSG00000039007	Cpq	1190003P12Rik|2610034C17Rik|Hls2|Lal-1|Pgcp	carboxypeptidase Q	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-81763338-2	chr13	81763238	81763438	+	702.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19909.0	NM_007684	12626.0	Mm.12481	NM_007684	ENSMUSG00000021537	Cetn3	MmCEN3	centrin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171492098-2	chr1	171491999	171492199	+	648.916626	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-11379.0	NM_019484	56009.0	Mm.389208	NM_019484	ENSMUSG00000060244	Alyref2	C130042O11Rik|REF2|Refbp2	Aly/REF export factor 2	protein-coding	0.130165768158385	0.154586854197291	0.146673168219111	0.140510947865047	0.564625237728317	0.845737137406866	1.09404968027151	0.141591137848048	4.3574595564012	0.0303410272329833	1
Merged-chr2-119548254-2	chr2	119548161	119548361	+	1000.0	f0_balb.idr|f1_balb.idr	promoter-TSS (NM_172857)	promoter-TSS (NM_172857)	554.0	NM_019769	56398.0	Mm.214765	NM_019769	ENSMUSG00000014077	Chp1	1500003O03Rik|AA960066|AI046351|Cahp|Chp|Sid470p|p24|vac	calcineurin-like EF hand protein 1	protein-coding	2.8116798516936	2.33979971428931	1.50392977723603	2.35040784731221	3.6386676452592	3.30212339476115	2.87326489320347	4.33039560076925	2.23369040994407	0.0019798627166424	0.0331148599548451
Merged-chr3-107771180-4	chr3	107771085	107771285	+	890.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10716.0	NM_001113529	12977.0	Mm.795	NM_007778	ENSMUSG00000014599	Csf1	C87615|Csfm|MCSF|op	colony stimulating factor 1 (macrophage)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-155802817-4	chr4	155802701	155802901	+	899.93335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025570)	promoter-TSS (NM_025570)	-77.0	NM_025570	66448.0	Mm.23825	NM_025570	ENSMUSG00000029066	Mrpl20	2610008D01Rik|4930425I20Rik	mitochondrial ribosomal protein L20	protein-coding	2.02581236772377	2.27792979146666	2.74564949213371	2.43250201978314	2.9717266709924	3.53166158023149	3.05684461548149	2.30632285560852	1.24608009213698	0.0919812315713335	0.469080823062989
Merged-chr7-69985956-4	chr7	69985881	69986081	+	758.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	351841.0	NR_131145	624549.0	Mm.116344	NR_131144	ENSMUSG00000109097	Gm29683	Gm44536	predicted gene, 29683	ncRNA	2.23827521454476	1.67123326810754	1.43049154693086	1.57951725714256	2.00275391221184	2.25036640106612	1.4392797887122	2.37390595577812	0.788652111254045	0.435710035910485	0.907834077091723
Merged-chr6-124758026-2	chr6	124757926	124758126	+	634.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1539.0	NM_007881	13498.0	Mm.333380	NM_007881	ENSMUSG00000004263	Atn1	Atr1|Drpla|atrophin-1	atrophin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34555698-4	chr17	34555591	34555791	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8604.0	NM_010929	18132.0	Mm.173813	NM_010929	ENSMUSG00000015468	Notch4	Int-3|Int3|N4	notch 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41974947-2	chr19	41974847	41975047	+	671.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028152, intron 1 of 30)	intron (NM_028152, intron 1 of 30)	6189.0	NM_028152	72199.0	Mm.218940	NM_028152	ENSMUSG00000025159	Mms19	2410001K24Rik|2610042O15Rik|AI316855|C79368|C86341|Mms19l	MMS19 (MET18 S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-42520950-3	chr15	42520870	42521070	+	892.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286062, intron 2 of 8)	intron (NM_001286062, intron 2 of 8)	156007.0	NM_001286062	11600.0	Mm.309336	NM_009640	ENSMUSG00000022309	Angpt1	1110046O21Rik|Ang-1|Ang1	angiopoietin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-88794482-3	chr4	88794389	88794589	+	911.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161609).6	promoter-TSS (NM_001161609).6	2.0	NM_001161609	545654.0	Mm.478784	NM_001161609	ENSMUSG00000095101	Gm13285	limitin	predicted gene 13285	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-154285552-4	chr2	154285440	154285640	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21704.0	NM_001025574	433492.0	Mm.330682	NM_001025574	ENSMUSG00000067996	Bpifb9b	5430413K10Rik|AI413838	BPI fold containing family B, member 9B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-120569816-2	chr2	120569716	120569916	+	652.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009222, intron 1 of 7)	B1_Mus1|SINE|Alu	2145.0	NM_009222	20619.0	Mm.245715	NM_009222	ENSMUSG00000027287	Snap23	23kDa|AA408749|SNAP-23|Sndt|Syndet	synaptosomal-associated protein 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125360948-2	chr6	125360848	125361048	+	827.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011609, intron 7 of 9)	intron (NM_011609, intron 7 of 9)	11225.0	NM_011609	21937.0	Mm.1258	NM_011609	ENSMUSG00000030341	Tnfrsf1a	CD120a|FPF|TNF-R|TNF-R-I|TNF-R1|TNF-R55|TNF-alphaR1|TNFAR|TNFR60|TNFRI|TNFRp55|TNFalpha-R1|Tnfr-2|Tnfr1|p55|p55-R	tumor necrosis factor receptor superfamily, member 1a	protein-coding	0.748462042418936	0.522771625936712	1.13596277999123	1.00851998620575	0.755070549486312	0.859651948025715	0.682791705439263	0.512476434069444	-1.0647419421946	0.503273348154609	1
Merged-chr4-156202662-4	chr4	156202584	156202784	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_030671)	promoter-TSS (NR_030671)	-600.0	NR_030671	100382.0	Mm.461024	NR_030671		AW011738	-	expressed sequence AW011738	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-134857092-2	chr4	134856992	134857192	+	963.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	-3747.0	NM_025382	66146.0	Mm.99793	NM_025382	ENSMUSG00000028826	Tmem57	1110007C24Rik|9230118A01Rik|AI317300|AI606104|C61|Maco1	transmembrane protein 57	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-60851620-2	chr18	60851520	60851720	+	602.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2656.0	NM_001198984	21453.0	Mm.486251	NM_011552	ENSMUSG00000024613	Tcof1	AA408847|AW209012|treacle	treacle ribosome biogenesis factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-83555684-4	chr15	83555588	83555788	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001030014)	promoter-TSS (NM_001030014)	23.0	NM_001030014	223722.0	Mm.37560	NM_001030014	ENSMUSG00000048755	Mcat	AI225907|BC025519	malonyl CoA:ACP acyltransferase (mitochondrial)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-19838386-3	chr4	19838296	19838496	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028746, intron 2 of 3)	RMER19C|LTR|ERVK	19669.0	NM_028746	74087.0	Mm.173833	NM_028746	ENSMUSG00000041052	Slc7a13	0610009O04Rik|AGT-1|AGT1|XAT2	solute carrier family 7, (cationic amino acid transporter, y+ system) member 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-100098984-2	chr13	100098884	100099084	+	653.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081061, exon 2 of 39)	exon (NM_001081061, exon 2 of 39)	5086.0	NM_001081061	544971.0	Mm.288546	NM_001081061	ENSMUSG00000049658	Bdp1	AI662220|AW049390|AW456745|B130055N23Rik|G630013P12Rik|TAF3B1|TFC5|TFIIIB150|TFIIIB90|Tfnr|mKIAA1241	B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118450767-2	chr11	118450667	118450867	+	659.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001204129, exon 4 of 4)	3' UTR (NM_001204129, exon 4 of 4)	4228.0	NR_045902	100126224.0	Mm.441989	NR_045902	ENSMUSG00000086514	Gm11747	-	predicted gene 11747	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-11092685-2	chr16	11092585	11092785	+	589.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_029582, intron 6 of 11)	intron (NM_029582, intron 6 of 11)	-4755.0	NM_134105	106200.0	Mm.291015	NM_029582	ENSMUSG00000022498	Txndc11	2810408E11Rik|AI427833|EFP1|Txdc11	thioredoxin domain containing 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-76674122-4	chr14	76674027	76674227	+	778.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3441.0	NR_015485	73272.0	Mm.116804	NR_015485	ENSMUSG00000101009	1700108F19Rik	1700020I02Rik|BB065030	RIKEN cDNA 1700108F19 gene	ncRNA	1.32637290136113	0.809716423373882	1.66995092903846	0.785294234073425	1.22437042761329	0.812776888961776	1.77821381949962	1.41536470628178	0.54766106859774	0.701004789877006	0.998431161219273
Merged-chr4-132530000-1	chr4	132529900	132530100	+	627.0	f1_c57bl6.idr	TTS (NM_007512)	TTS (NM_007512)	5414.0	NM_007512	11983.0	Mm.2171	NM_007512	ENSMUSG00000054428	Atpif1	Atpi|IF(1)|If1	ATPase inhibitory factor 1	protein-coding	0.0646052236659737	1.22075267237532	0.0945020853138946	0.0835301300812603	0.0674799302320033	0.1113296078791	0.0975834955523982	1.72849715054986	0.933018407342861	0.77703274647495	0.998431161219273
Merged-chr1-80505057-2	chr1	80504957	80505157	+	806.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_175291, intron 55 of 55)	intron (NM_175291, intron 55 of 55)	59125.0	NR_040460	72208.0	Mm.396181	NR_040460	ENSMUSG00000101483	1700016L21Rik	CD11c-DTR|DCKO|DTR-GFP|DTR-GRP|Jr3|Tg(Itgax-DTR/EGFP)57Lan	RIKEN cDNA 1700016L21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-56748061-4	chr19	56747967	56748167	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25695.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-26696268-1	chr8	26696168	26696368	+	559.0	f1_c57bl6.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	128155.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	2.28664254718396	2.5154617484705	2.05223054022998	1.00742726148387	1.89270355086497	1.05850284422572	1.66959330705259	1.01100522113936	-1.68117991771848	0.167151439297405	0.633286287152144
Merged-chr17-8147018-2	chr17	8146918	8147118	+	837.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_026611, intron 1 of 8)	intron (NM_026611, intron 1 of 8)	770.0	NM_001083938	100037283.0	Mm.426736	NM_001083938	ENSMUSG00000095687	Rnaset2a	0610007O07Rik|4833423A10Rik|4930532K22Rik|C79750|RNASE6PL|Rnaset2	ribonuclease T2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-131079092-4	chr2	131079001	131079201	+	927.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011426, intron 8 of 20)	intron (NM_011426, intron 8 of 20)	7664.0	NM_011426	20612.0	Mm.1374	NM_011426	ENSMUSG00000027322	Siglec1	Cd169|Siglec-1|Sn	sialic acid binding Ig-like lectin 1, sialoadhesin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36700605-4	chr18	36700514	36700714	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER21-int|LTR|ERVL	-4689.0	NM_172831	240216.0	Mm.252323	NM_172831	ENSMUSG00000044719	E230025N22Rik	EG240216	Riken cDNA E230025N22 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120703614-2	chr11	120703514	120703714	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_198223, exon 10 of 15)	exon (NM_198223, exon 10 of 15)	10153.0	NM_016665	20892.0	Mm.259716	NM_016665	ENSMUSG00000025144	Cenpx	Stra13	centromere protein X	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-19705858-4	chr14	19705767	19705967	+	972.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45390.0	NM_008695	18074.0	Mm.20348	NM_008695	ENSMUSG00000021806	Nid2	AW547149|Ly111|NID-2|entactin-2|nidogen-2	nidogen 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10689712-2	chr19	10689612	10689812	+	951.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361958, intron 1 of 4)	intron (NM_001361958, intron 1 of 4)	977.0	NM_001361959	107305.0	Mm.19091	NM_181403	ENSMUSG00000048832	Vps37c	5730409F24Rik|AU042646	vacuolar protein sorting 37C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-89428428-2	chr15	89428328	89428528	+	1000.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_004843, exon 3 of 27)	non-coding (NR_004843, exon 3 of 27)	1499.0	NR_037154	12651.0	Mm.485045	NM_007692	ENSMUSG00000022617	Chkb	Chetk|Chkl|Ck|Ck/Ek|Ck/Ek-beta|Ckb|Ckekb|Ek	choline kinase beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-148487089-4	chr2	148486975	148487175	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43540.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-34730175-4	chr4	34730075	34730275	+	947.224976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027041)	promoter-TSS (NM_027041)	31.0	NM_027041	69329.0	Mm.389548	NM_027041	ENSMUSG00000028294	Cfap206	1700003M02Rik|AU024269	cilia and flagella associated protein 206	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-24627848-2	chr16	24627748	24627948	+	686.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 5 of 12)	B2_Mm2|SINE|B2	-94007.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99825180-3	chr15	99825070	99825270	+	794.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113545, intron 3 of 10)	ID_B1|SINE|B4	-5021.0	NM_023063	65970.0	Mm.33207	NM_023063	ENSMUSG00000023022	Lima1	Eplin	LIM domain and actin binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-120288650-1	chr14	120288550	120288750	+	642.0	f0_balb.idr	intron (NM_001360380, intron 1 of 7)	intron (NM_001360380, intron 1 of 7)	12981.0	NM_001360380	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	2.16390861244074	1.84021067014929	2.22977633701418	2.27966074314139	2.78339115870381	2.44542356142899	1.34585586727542	2.17864361066293	0.387738071017959	0.677449793164151	0.994818437932722
Merged-chr1-60425910-2	chr1	60425810	60426010	+	787.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198127, intron 1 of 8)	URR1B|DNA|hAT-Charlie	16291.0	NM_001198570	329165.0	Mm.212066	NM_198127	ENSMUSG00000026782	Abi2	8430425M24Rik|AI839867|C130078H13	abl-interactor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-145806888-4	chr2	145806766	145806966	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028724, intron 2 of 12)	intron (NM_028724, intron 2 of 12)	20750.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5874428-2	chr19	5874328	5874528	+	926.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026169, intron 2 of 10)	MIR3|SINE|MIR	780.0	NM_026169	67457.0	Mm.202092	NM_026169	ENSMUSG00000024816	Frmd8	1200004M23Rik|2310035N23Rik|4931429L16Rik|AU018809	FERM domain containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-148586846-4	chr2	148586749	148586949	+	810.516663	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-85766.0	NM_019761	56488.0	Mm.34663	NM_019761	ENSMUSG00000036992	Nxt1	1110001N02Rik	NTF2-related export protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-93767116-3	chr16	93767016	93767216	+	758.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357118, intron 17 of 35)	intron (NM_001357118, intron 17 of 35)	27785.0	NR_151466	102633000.0	Mm.443436	NR_151466		2310043M15Rik	-	RIKEN cDNA 2310043M15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-54885902-2	chr14	54885802	54886002	+	678.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007537, exon 4 of 4)	3' UTR (NM_007537, exon 4 of 4)	2477.0	NM_007537	12050.0	Mm.6967	NM_007537	ENSMUSG00000089682	Bcl2l2	AW048834|Bcl-w|Gtrgal2|Gtrosa41|bclw|c98	BCL2-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-23994696-2	chr17	23994591	23994791	+	655.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_133731, exon 5 of 6)	exon (NM_133731, exon 5 of 6)	3409.0	NM_133731	70835.0	Mm.157351	NM_133731	ENSMUSG00000045027	Prss22	4733401N09Rik|BSSP-4|SP001LA	protease, serine 22	protein-coding	0.748844933087885	0.48193698329283	0.472547897012655	0.93123691146245	0.877177462070801	0.484040989491066	1.4834024082799	0.804895400387505	1.51671438428147	0.354645142719921	1
Merged-chr2-20898910-4	chr2	20898788	20898988	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001128084, intron 3 of 24)	intron (NM_001128084, intron 3 of 24)	68833.0	NM_001081364	71435.0	Mm.28507	NM_001081364	ENSMUSG00000036591	Arhgap21	5530401C11Rik|AA416458|ARHGAP10	Rho GTPase activating protein 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-25992696-6	chr8	25992494	25992694	+	847.81665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029037, intron 1 of 4)	B2_Mm2|SINE|B2	1527.0	NM_029037	74653.0	Mm.17631	NM_029037	ENSMUSG00000037251	Pomk	4930444A02Rik|Sgk196	protein-O-mannose kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-55781396-4	chr16	55781284	55781484	+	892.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40754.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-38535542-4	chr15	38535452	38535652	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16286.0	NM_018745	54375.0	Mm.250214	NM_018745	ENSMUSG00000037458	Azin1	1700085L02Rik|AZI|Oazi|Oazin	antizyme inhibitor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-57088775-2	chr19	57088675	57088875	+	597.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001103177, intron 6 of 21)	intron (NM_001103177, intron 6 of 21)	30249.0	NM_001347459	226251.0	Mm.217161	NM_178688	ENSMUSG00000025085	Ablim1	2210411C18Rik|2610209L21Rik|4833406P10Rik|9330196J19Rik|AV079770|AW060987|AW215784|Limab1|mKIAA0059	actin-binding LIM protein 1	protein-coding	-1.05877568042897	-1.03501312238488	-1.04817210678232	-1.05426068996071	-1.05810152525527	-1.03216151557194	-0.188696606725984	-1.05378786495764	3.16074139804981	0.330468818528456	1
Merged-chr13-52793740-4	chr13	52793628	52793828	+	838.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36523.0	NR_027893	105404.0	Mm.184173	NR_027893		BB123696	-	expressed sequence BB123696	ncRNA	2.9944105483001	3.44321489686033	3.5538016366683	2.61899393357901	3.10036120753025	3.54906606327029	3.35587564620083	2.32566735255236	-0.0761322182307874	0.905839324340728	0.998431161219273
Merged-chr5-43672662-1	chr5	43672562	43672762	+	1000.0	f1_c57bl6.idr	intron (NM_001359906, intron 4 of 37)	intron (NM_001359906, intron 4 of 37)	10283.0	NM_001359903	231214.0	Mm.44434	NM_172274	ENSMUSG00000039765	Cc2d2a	5730509K17Rik|b2b1035Clo	coiled-coil and C2 domain containing 2A	protein-coding	0.729836703896552	0.847626577179845	0.948271586227363	0.447594912643725	0.437422952653118	0.856034230501733	1.37850732683373	0.448844591916245	0.487576416720823	0.770803994079094	1
Merged-chr17-33554766-2	chr17	33554666	33554866	+	566.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053214)	promoter-TSS (NM_053214)	-941.0	NM_053214	17916.0	Mm.42019	NM_053214	ENSMUSG00000024300	Myo1f	C330006B10Rik	myosin IF	protein-coding	-1.22315906685268	-1.19557143632602	-1.20673282037136	-0.55836125556573	-1.22265483704505	-1.19315271784257	-1.20420612767407	-1.21425999345206	-2.67891099987134	0.437057736398543	1
Merged-chr7-140128048-4	chr7	140127962	140128162	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153783, intron 3 of 6)	intron (NM_153783, intron 3 of 6)	2377.0	NM_153783	212503.0	Mm.486735	NM_153783	ENSMUSG00000025464	Paox	2410012F02Rik|AI118225|Pao	polyamine oxidase (exo-N4-amino)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-145923343-2	chr3	145923243	145923443	+	843.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009740)	promoter-TSS (NM_009740)	-919.0	NM_009740	12042.0	Mm.239141	NM_009740	ENSMUSG00000028191	Bcl10	AI132454|BCL-10|C81403|CARMEN|CIPER|CLAP|ME10|cE10	B cell leukemia/lymphoma 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-42714491-1	chr1	42714391	42714591	+	579.0	f0_balb.idr	Intergenic	Intergenic	-1037.0	NR_110495	66620.0	Mm.383631	NR_110495	ENSMUSG00000097063	Pantr2	2610207O16Rik|Pou3f3os2|linc-Brn1b	POU domain, class 3, transcription factor 3 adjacent noncoding transcript 2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-17914618-4	chr16	17914607	17914807	+	826.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029469, intron 1 of 2)	CpG-5570	352.0	NM_029469	195333.0	Mm.463003	NM_029469	ENSMUSG00000022738	Gsc2	4930568H22Rik|GSC-2|Gscl	goosecoid homebox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34359638-1	chr17	34359538	34359738	+	614.0	f1_c57bl6.idr	intron (NM_079835, intron 3 of 8)	B3|SINE|B2	4816.0	NM_079835	547431.0	Mm.441007	NM_079835	ENSMUSG00000024340	Btnl2	BTL-II|BTLN2|Btl2|Gm315|NG9	butyrophilin-like 2	protein-coding	0.693057529321156	1.284311219879	0.289883396788386	0.283215153896452	0.580399017384708	0.85123325203293	0.291779750892535	0.284384033750523	-1.02033234812989	0.582583532935402	1
Merged-chr3-89390122-2	chr3	89390022	89390222	+	906.5625	f1_balb.idr|f1_c57bl6.idr	intron (NM_009565, intron 1 of 2)	intron (NM_009565, intron 1 of 2)	-1742.0	NR_040403	545539.0	Mm.393389	NR_040403	ENSMUSG00000074466	Gm15417	-	predicted gene 15417	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-10459348-4	chr10	10459242	10459442	+	966.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127353, intron 1 of 36)	intron (NM_001127353, intron 1 of 36)	12972.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	4.11311017170569	3.51148997441763	3.94880185900338	2.95603574562132	4.05543934821602	3.89344623889054	3.9118831316645	4.03933984791529	0.378865541357809	0.440836865645931	0.909871245231123
Merged-chr10-51454593-4	chr10	51454508	51454708	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-26004.0	NM_008147	14727.0	Mm.439661	NM_008147	ENSMUSG00000112023	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-116900084-4	chr2	116900007	116900207	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040335)	promoter-TSS (NR_040335)	-45.0	NR_040336	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-140956604-4	chr7	140956471	140956671	+	973.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030694)	promoter-TSS (NM_030694)	-610.0	NM_030694	80876.0	Mm.379266	NM_030694	ENSMUSG00000060591	Ifitm2	DSPA2c|Ifitm3l|fragilis3|mil-3	interferon induced transmembrane protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-17629937-4	chr6	17629850	17630050	+	904.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7060.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-60788956-1	chr19	60788856	60789056	+	826.0	f1_balb.idr	intron (NM_010123, intron 1 of 21)	intron (NM_010123, intron 1 of 21)	1737.0	NM_010123	13669.0	Mm.2238	NM_010123	ENSMUSG00000024991	Eif3a	A830012B05Rik|Csma|Eif3|Eif3s10|mKIAA0139	eukaryotic translation initiation factor 3, subunit A	protein-coding	-0.0520243391376742	-0.036127415893303	-0.04133633633093	-0.0453544722622707	0.094377546222634	0.3232939639857	0.289966323043495	0.675004676969382	3.95332911210865	0.0583960685334969	1
Merged-chr17-35739794-4	chr17	35739697	35739897	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32653.0	NR_045459	74601.0	Mm.410840	NR_045459	ENSMUSG00000092171	4833427F10Rik	-	RIKEN cDNA 4833427F10 gene	ncRNA	3.32058833733113	2.78891500129514	2.29486869186287	4.659201439183	3.97025030885984	4.41700424684001	3.5547269867521	4.20813881947366	0.655971392801644	0.288897810165366	0.794513124930637
Merged-chr19-11817278-2	chr19	11817178	11817378	+	630.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_011502, intron 1 of 10)	intron (NM_011502, intron 1 of 10)	2125.0	NM_001286543	20908.0	Mm.272264	NM_011502	ENSMUSG00000041488	Stx3	Syn-3	syntaxin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-120791922-2	chr14	120791822	120792022	+	683.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR41B|LTR|ERVL	-119272.0	NM_023579	70572.0	Mm.221452	NM_023579	ENSMUSG00000030662	Ipo5	1110011C18Rik|5730478E03Rik|AA409333|C76941|IMB3|Kpnb3|Ranbp5|imp5	importin 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-8507536-4	chr12	8507445	8507645	+	949.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7536.0	NM_007483	11852.0	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	0.888846643078563	1.96827043407437	1.65856706149317	2.09945357946295	0.892951152254483	0.955906194768093	1.79805109893727	1.61608454111231	-1.09552313985841	0.406932495262269	0.891750620279918
Merged-chr9-120034526-4	chr9	120034413	120034613	+	907.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10915.0	NM_011724	22437.0	Mm.10117	NM_011724	ENSMUSG00000079243	Xirp1	AI415219|Cmya1	xin actin-binding repeat containing 1	protein-coding	3.6824844145681	1.93668255077452	3.70664490383542	3.34588530402503	3.04909704456768	1.65065369419336	2.78940478825444	3.73620857137704	-0.520824893650723	0.501477698282781	0.938443375140454
Merged-chr4-32248508-4	chr4	32248407	32248607	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-168928.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-128667345-4	chr4	128667267	128667467	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195130, intron 1 of 14)	intron (NM_001195130, intron 1 of 14)	12665.0	NM_001195130	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127666973-4	chr10	127666869	127667069	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045171)	promoter-TSS (NR_045171)	-154.0	NR_045171	72243.0	Mm.482902	NR_045171	ENSMUSG00000040195	1700012D01Rik	-	RIKEN cDNA 1700012D01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-60648906-2	chr18	60648806	60649006	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14504.0	NR_045401	328963.0	Mm.417203	NR_045401		G630071F17Rik	G630071F17	RIKEN cDNA G630071F17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-13052270-3	chr6	13052177	13052377	+	866.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17482.0	NM_027992	71900.0	Mm.27742	NM_027992	ENSMUSG00000029571	Tmem106b	2310036D22Rik|5830455K21Rik|6430519M21Rik|AI428776|AI661344	transmembrane protein 106B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-81225197-1	chr7	81225097	81225297	+	551.0	f0_balb.idr	intron (NM_008803, intron 1 of 21)	B4A|SINE|B4	11393.0	NM_008803	18584.0	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-158177885-2	chr2	158177785	158177985	+	995.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14123.0	NR_036606	73399.0	Mm.416861	NR_036606	ENSMUSG00000078957	1700060C20Rik	-	RIKEN cDNA 1700060C20 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122778998-4	chr5	122778920	122779120	+	947.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199676, intron 1 of 16)	CpG	390.0	NM_001199676	207565.0	Mm.289237	NM_145358	ENSMUSG00000029471	Camkk2	6330570N16Rik|AW061083|mKIAA0787	calcium/calmodulin-dependent protein kinase kinase 2, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-21295938-4	chr10	21295847	21296047	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145209)	promoter-TSS (NM_001145209)	-32.0	NM_001042593	56422.0	Mm.25527	NM_019702	ENSMUSG00000019977	Hbs1l	2810035F15Rik|AI326327|eRFS	Hbs1-like (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-54474803-3	chr14	54474687	54474887	+	951.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1313.0	NM_080726	140743.0	Mm.274727	NM_080726	ENSMUSG00000022176	Rem2	AW411893	rad and gem related GTP binding protein 2	protein-coding	1.97965607292751	2.7603943084417	1.0892082087593	1.05294342830655	3.01448588430348	1.4669286106151	3.63240287880812	1.35564823767842	1.54573943217005	0.157754671328996	0.614792295346025
Merged-chr1-85282011-1	chr1	85281911	85282111	+	614.5	f1_balb.idr	Intergenic	RSINE1|SINE|B4	-11445.0	NM_001037909	620078.0	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik	RIKEN cDNA C130026I21 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-58457159-3	chr13	58457039	58457239	+	883.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53796.0	NM_001301341	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	-0.0563732189196965	-0.0367585004777547	0.774003835564119	0.13198537609341	-0.0551367741187567	-0.0353255255333959	0.690256106477965	-0.0472261343569367	-0.429737337699131	0.847592483067174	1
Merged-chr9-72991641-4	chr9	72991545	72991745	+	865.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359295, intron 1 of 9)	intron (NM_001359295, intron 1 of 9)	6141.0	NM_001286544	72278.0	Mm.268475	NM_028181	ENSMUSG00000034563	Ccpg1	1700030B06Rik|1810073J13Rik|9430028F23Rik|AI426686|AI875170|CPR8|D9Ertd392e	cell cycle progression 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-57976845-2	chr18	57976745	57976945	+	688.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	98167.0	NM_009194	20496.0	Mm.399997	NM_009194	ENSMUSG00000024597	Slc12a2	9330166H04Rik|Nkcc1|mBSC2|sy-ns	solute carrier family 12, member 2	protein-coding	0.487257696946985	0.71759584277498	0.692530686592802	1.06045116221633	0.488953122270593	1.2791788653249	0.698086659733329	1.06787177538705	0.861843706313069	0.588982230618937	1
Merged-chr10-81177870-3	chr10	81177821	81178021	+	850.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007907, intron 2 of 13)	intron (NM_007907, intron 2 of 13)	-1040.0	NR_028549	100217454.0		NR_028549	ENSMUSG00000064441	Snord37	MBII-376	small nucleolar RNA, C/D box 37	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-118810862-3	chr10	118810772	118810972	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58031.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-118706824-2	chr2	118706764	118706964	+	875.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001290790)	TTS (NM_001290790)	-2901.0	NM_001081971	383787.0	Mm.35758	NM_001081971	ENSMUSG00000078137	Ankrd63	Gm1337	ankyrin repeat domain 63	protein-coding	-0.846390191011184	-0.831819789139191	0.193351182241113	-0.84020487638748	-0.84545812403323	-0.830604595290638	-0.835538330417158	-0.839564684224917	-3.95723586738745	0.142861010112219	1
Merged-chr5-76337293-4	chr5	76337191	76337391	+	758.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019515, intron 8 of 9)	intron (NM_019515, intron 8 of 9)	6053.0	NR_152115	74621.0	Mm.444687	NR_152115		4930432L08Rik	-	RIKEN cDNA 4930432L08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97628997-3	chr11	97628813	97629013	+	786.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175332, exon 1 of 1)	exon (NM_175332, exon 1 of 1)	803.0	NM_175332	103551.0	Mm.24506	NM_175332	ENSMUSG00000043439	Epop	AA409164|AI413509|AW539173|E13|E130012A19Rik|esPRC2p48	elongin BC and polycomb repressive complex 2 associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-74366791-2	chr1	74366691	74366891	+	876.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033345, intron 7 of 9)	intron (NM_001033345, intron 7 of 9)	4683.0	NM_001033345	241112.0	Mm.310460	NM_001033345	ENSMUSG00000073650	Catip	Gm216	ciliogenesis associated TTC17 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-148679049-2	chr6	148678949	148679149	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1049.0	NR_131024	75831.0	Mm.159595	NR_131024	ENSMUSG00000084909	4930528G23Rik	-	RIKEN cDNA 4930528G23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-84765473-2	chr12	84765373	84765573	+	813.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023409, intron 1 of 3)	intron (NM_023409, intron 1 of 3)	7639.0	NM_023409	67963.0	Mm.282556	NM_023409	ENSMUSG00000021242	Npc2	2700012J19Rik|AA408070|AU045843|HE1	NPC intracellular cholesterol transporter 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132270154-6	chr4	132270050	132270250	+	974.388916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_002865)	promoter-TSS (NR_002865)	36.0	NR_002865	353373.0	Mm.424675	NR_002865		Rnu11	MBII-407|Mirn801|mir-801|mmu-mir-801	U11 small nuclear RNA	snRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120482831-2	chr8	120482731	120482931	+	712.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-6035.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-139602846-4	chr4	139602755	139602955	+	858.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205173, intron 1 of 8)	intron (NM_001205173, intron 1 of 8)	-20039.0	NM_175438	212647.0	Mm.273571	NM_175438	ENSMUSG00000028737	Aldh4a1	A930035F14Rik|Ahd-1|Ahd1|Aldh4|Aldh5a1|E330022C09|P5cd|P5cdh|P5cdhl|P5cdhs|Ssdh1	aldehyde dehydrogenase 4 family, member A1	protein-coding	3.93716556411721	4.47703788231328	3.23508342940804	4.08528249863936	3.63775508100894	4.30511821050904	2.54183355052181	3.04147391985039	-0.654692097676273	0.25429709282423	0.751985668675266
Merged-chr3-127035110-1	chr3	127035010	127035210	+	567.0	f1_c57bl6.idr	intron (NM_001327938, intron 10 of 47)	intron (NM_001327938, intron 10 of 47)	-36658.0	NM_178655	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	0.234763780197264	0.249703455574896	0.244762008587488	0.725940398400124	0.23568377517186	0.250823576218713	0.93371841066565	0.732261445116162	1.43353872128954	0.495697877804871	1
Merged-chr6-122826462-4	chr6	122826270	122826470	+	799.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021899, intron 1 of 10)	intron (NM_021899, intron 1 of 10)	-5007.0	NR_106090	102465710.0		NR_106090	ENSMUSG00000106580	Mir7231	mmu-mir-7231	microRNA 7231	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-183297002-5	chr1	183296896	183297096	+	974.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181732)	promoter-TSS (NM_181732)	-64.0	NM_181732	108909.0	Mm.290502	NM_145626	ENSMUSG00000042901	Aida	2610208M17Rik|BC004835	axin interactor, dorsalization associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-12302450-4	chr13	12302362	12302562	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033268, intron 6 of 20)	intron (NM_033268, intron 6 of 20)	38270.0	NM_033268	11472.0	Mm.37638	NM_033268	ENSMUSG00000052374	Actn2	1110008F24Rik	actinin alpha 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-121370209-4	chr10	121370075	121370275	+	878.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029364, intron 1 of 13)	intron (NM_029364, intron 1 of 13)	5085.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-86501232-2	chr1	86501132	86501332	+	933.400024	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25325.0	NR_153834	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-66436651-2	chr8	66436551	66436751	+	681.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_175188, intron 6 of 7)	intron (NM_175188, intron 6 of 7)	49879.0	NM_025465	66282.0	Mm.294985	NM_025465	ENSMUSG00000025591	Tma16	1810029B16Rik	translation machinery associated 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-116281138-4	chr12	116281016	116281216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028731)	promoter-TSS (NM_028731)	-106.0	NM_028731	52635.0	Mm.273755	NM_028731	ENSMUSG00000021171	Esyt2	2410017M09Rik|4921504I16Rik|CHR2SYT|D12Ertd551e|Fam62b	extended synaptotagmin-like protein 2	protein-coding	7.18712718337992	7.35680656480303	6.80483268294101	6.72277518984018	7.03107305031565	7.00358101199669	7.30471180131118	6.97735162225511	0.0463629464009153	0.803227934962371	0.998431161219273
Merged-chr6-113680695-2	chr6	113680595	113680795	+	706.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 8 of 11)	intron (NM_001113553, intron 8 of 11)	-16355.0	NM_001347356	381801.0	Mm.333322	NM_001033463	ENSMUSG00000056952	Tatdn2	AI646012|mKIAA0218	TatD DNase domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-170307672-4	chr2	170307589	170307789	+	906.2416380000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48672.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78607750-4	chr15	78607664	78607864	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028195, intron 5 of 12)	intron (NM_028195, intron 5 of 12)	10717.0	NM_028195	72318.0	Mm.32911	NM_028195	ENSMUSG00000018008	Cyth4	2510004M07Rik|5830469K17Rik|AI467541|Pscd4|mFLJ00017	cytohesin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-59724695-2	chr9	59724595	59724795	+	773.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16931.0	NM_001033498	546134.0	Mm.297580	NM_001033498	ENSMUSG00000074259	Gramd2	BC064463|Gramd2a	GRAM domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129497281-4	chr4	129497187	129497387	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6097.0	NM_001085491	68233.0	Mm.424983	NM_001085491	ENSMUSG00000078554	Fam229a	1700125D06Rik	family with sequence similarity 229, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153215613-1	chr2	153215513	153215713	+	606.0	f0_balb.idr	Intergenic	Intergenic	9828.0	NM_198617	241732.0	Mm.277243	NM_198617	ENSMUSG00000074671	Tspyl3	AW212607|Gm36	TSPY-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-99451394-4	chr10	99451277	99451477	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-157794.0	NR_038019	100504202.0	Mm.403801	NR_038019	ENSMUSG00000111962	Gm20110	-	predicted gene, 20110	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-103179755-2	chr9	103179655	103179855	+	743.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173781, intron 7 of 7)	intron (NM_173781, intron 7 of 7)	22310.0	NM_009275	20818.0	Mm.273053	NM_009275	ENSMUSG00000032553	Srprb	AA409543	signal recognition particle receptor, B subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-84169529-4	chr17	84169442	84169642	+	877.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus1|LINE|L1	18405.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-86404252-4	chr6	86404152	86404352	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011585)	promoter-TSS (NM_011585)	33.0	NM_001164078	21841.0	Mm.333219	NM_011585	ENSMUSG00000071337	Tia1	2310050N03Rik|AI256674|TIA-1|mTIA-1	cytotoxic granule-associated RNA binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-55288757-3	chr18	55288662	55288862	+	779.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-296171.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	1.85619405375383	1.02338879528162	2.11626472043125	1.96499442062818	1.45726687469563	1.63540554977733	1.00874672777447	1.38042370678059	-1.37057052481212	0.25279776640167	0.750174652706164
Merged-chr8-112012069-3	chr8	112012008	112012208	+	947.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001130868)	promoter-TSS (NM_001130868)	749.0	NM_020584	57321.0	Mm.213064	NM_020584	ENSMUSG00000033430	Terf2ip	Rap1	telomeric repeat binding factor 2, interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-79682901-5	chr10	79682753	79682953	+	879.966675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359818, intron 1 of 4)	intron (NM_001359818, intron 1 of 4)	658.0	NM_001359817	216150.0	Mm.21981	NM_177613	ENSMUSG00000020307	Cdc34	AI327276|E2-CDC34|UBE2R1	cell division cycle 34	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141488418-3	chr7	141488300	141488500	+	801.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252588, intron 2 of 7)	intron (NM_001252588, intron 2 of 7)	12020.0	NM_001252588	64540.0	Mm.489619	NM_053082	ENSMUSG00000025511	Tspan4	AI325509|AI746565|D130042I01Rik|NAG-2|Tm4sf7|Tspan-4	tetraspanin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114881506-2	chr11	114881406	114881606	+	829.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8535.0	NM_001347654	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-143406188-2	chr5	143406088	143406288	+	555.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025841, intron 1 of 4)	B3|SINE|B2	2368.0	NM_025841	66913.0	Mm.181880	NM_025841	ENSMUSG00000079111	Kdelr2	1110007A14Rik	KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70374538-4	chr11	70374440	70374640	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MEf|LINE|L1	-22509.0	NM_009660	11687.0	Mm.4584	NM_009660	ENSMUSG00000018924	Alox15	12-LO|12/15-LO|15-LOX|Alox12l|L-12LO	arachidonate 15-lipoxygenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-22349983-4	chr16	22349879	22350079	+	763.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54991.0	NR_153764	100043507.0		NR_153764		Gng5-ps	Gm15776	G protein subunit gamma 5, pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-6717348-4	chr10	6717250	6717450	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TAAG)n|Simple_repeat|Simple_repeat	-41243.0	NM_001302794	18390.0	Mm.438000	NM_011013	ENSMUSG00000000766	Oprm1	M-OR-1|MOP-R|MOR-1|MOR-1O|Oprm|mor|muOR	opioid receptor, mu 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-116258742-2	chr6	116258642	116258842	+	661.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_026585, exon 29 of 31)	exon (NM_026585, exon 29 of 31)	-5477.0	NM_001309446	67492.0	Mm.272772	NM_001081317	ENSMUSG00000042213	Zfand4	Anubl1	zinc finger, AN1-type domain 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-103852724-4	chr3	103852623	103852823	+	872.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142960, intron 3 of 3)	intron (NM_001142960, intron 3 of 3)	-7072.0	NR_104070	19260.0	Mm.395	NM_008979	ENSMUSG00000027843	Ptpn22	70zpep|PEP|Ptpn8	protein tyrosine phosphatase, non-receptor type 22 (lymphoid)	protein-coding	4.80964681595687	4.71572475854383	3.93863675036105	4.62428902663342	4.27704574805499	4.31305467712716	3.53186995354116	4.11264963998219	-0.613508638078887	0.144096631578558	0.593162643760135
Merged-chr16-94572653-4	chr16	94572546	94572746	+	929.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113389, intron 1 of 11)	intron (NM_001113389, intron 1 of 11)	1739.0	NM_001113389	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-7868832-4	chr17	7868736	7868936	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57164.0	NM_145968	72536.0	Mm.119680	NM_145968	ENSMUSG00000033450	Tagap	2610315E15Rik|TRD|Tcd-1|Tcd1|Tcd1a|tcs-1|tcs1	T cell activation Rho GTPase activating protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-46783772-2	chr7	46783672	46783872	+	725.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001005247, intron 6 of 22)	intron (NM_001005247, intron 6 of 22)	12109.0	NM_001005248	246694.0	Mm.379442	NM_178742	ENSMUSG00000014418	Hps5	AI646796|AL022647|C85120|haze|hz|maroon|mr|ru-2|ru2	HPS5, biogenesis of lysosomal organelles complex 2 subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-87757203-6	chr11	87757129	87757329	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_106176)	promoter-TSS (NR_106176)	-274.0	NR_106176	102466883.0		NR_106176	ENSMUSG00000065420	Mir142b	Gm27750|mmu-mir-142b	microRNA 142b	ncRNA	5.40207743959951	5.04196214708711	4.9689313373661	5.1216501912959	5.41731480182573	4.06960511044661	4.4858799113169	5.4523195728021	-0.17946169028288	0.626826329677171	0.980912176761026
Merged-chr10-43919200-4	chr10	43919068	43919268	+	980.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152603, intron 4 of 7)	intron (NR_152603, intron 4 of 7)	17361.0	NM_130892	170728.0	Mm.390253	NM_130892	ENSMUSG00000019864	Rtn4ip1	D10Ertd690e|NIMP	reticulon 4 interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-107939818-2	chr4	107939718	107939918	+	661.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14114.0	NR_131071	77223.0	Mm.401926	NR_131071	ENSMUSG00000086713	4930407G08Rik	-	RIKEN cDNA 4930407G08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-145434271-4	chr2	145434165	145434365	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053195, intron 2 of 16)	intron (NM_053195, intron 2 of 16)	120717.0	NM_001037929	627302.0	Mm.445953	NM_001037929		Gm14092	-	predicted gene 14092	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-4386967-7	chr10	4386865	4387065	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033466, intron 1 of 2)	CpG	510.0	NM_001359811	381990.0	Mm.262466	NM_001033466	ENSMUSG00000075327	Zbtb2	Gm1103	zinc finger and BTB domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81285864-4	chr10	81285769	81285969	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001282096)	promoter-TSS (NM_001282096)	-88.0	NM_001282096	27375.0	Mm.27984	NM_013769	ENSMUSG00000034917	Tjp3	-	tight junction protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-136174575-2	chr1	136174475	136174675	+	601.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_153829, exon 36 of 36)	non-coding (NR_153829, exon 36 of 36)	38253.0	NM_001329610	76422.0	Mm.159735	NM_001329610		Mroh3	2310006M14Rik	maestro heat-like repeat family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-42512257-2	chr18	42512157	42512357	+	807.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360881, intron 1 of 20)	CpG	770.0	NR_110344	56070.0	Mm.270511	NM_001039474	ENSMUSG00000024498	Tcerg1	2410022J09Rik|2900090C16Rik|AI428505|CA150b|FBP23|FBP28|Taf2s|ca150|p144	transcription elongation regulator 1 (CA150)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-148419299-2	chr5	148419199	148419399	+	902.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19395.0	NM_007513	11987.0	Mm.275489	NM_007513	ENSMUSG00000041313	Slc7a1	4831426K01Rik|AI447493|Atrc-1|Atrc1|Cat1|Rec-1|Rev-1|mCAT-1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3710598-4	chr4	3710400	3710600	+	956.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 1 of 12)	intron (NM_001111096, intron 1 of 12)	-4464.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-83036356-4	chr15	83036238	83036438	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2941.0	NM_001271411	74039.0	Mm.32584	NM_028728	ENSMUSG00000058099	Nfam1	4921501M20Rik|Cnaip	Nfat activating molecule with ITAM motif 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-112787191-4	chr13	112787093	112787293	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	-13584.0	NM_008903	19012.0	Mm.291029	NM_008247	ENSMUSG00000021759	Plpp1	Hic53|Hpic53|LPP-1|LPP1|PAP-2a|PAP2-alpha|PAP2a|Ppap2a|mPAP	phospholipid phosphatase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-101295699-2	chr3	101295599	101295799	+	796.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7760.0	NM_013486	12481.0	Mm.22842	NM_013486	ENSMUSG00000027863	Cd2	LFA-2|Ly-37|Ly37	CD2 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102446776-2	chr12	102446676	102446876	+	864.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A1|LTR|ERVL-MaLR	-6963.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-55667231-3	chr3	55667112	55667312	+	813.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030595, intron 48 of 57)	intron (NM_030595, intron 48 of 57)	-115298.0	NM_010750	17116.0	Mm.440209	NM_010750	ENSMUSG00000056947	Mab21l1	AW047968	mab-21-like 1 (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-148956269-4	chr5	148956184	148956384	+	971.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6034.0	NR_040686	71473.0	Mm.90306	NR_040686	ENSMUSG00000079069	8430423G03Rik	-	RIKEN cDNA 8430423G03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96273741-3	chr3	96273624	96273824	+	993.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4024.0	NM_175666	319189.0	Mm.297655	NM_175666	ENSMUSG00000105827	Hist2h2bb	H2b-616	histone cluster 2, H2bb	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80203182-4	chr7	80203092	80203292	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360135, intron 1 of 13)	intron (NM_001360135, intron 1 of 13)	4751.0	NM_001360135	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-66895852-2	chr9	66895763	66895963	+	663.5	f0_balb.idr|f0_c57.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	23842.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-98107301-3	chr16	98107175	98107375	+	934.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24836.0	NR_015491	320586.0	Mm.442230	NR_015491		A630089N07Rik	-	RIKEN cDNA A630089N07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-92443837-3	chr16	92443728	92443928	+	945.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081549, intron 1 of 3)	intron (NM_001081549, intron 1 of 3)	22341.0	NM_001081549	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56268542-2	chr17	56268442	56268642	+	643.666626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_174989)	TTS (NM_174989)	8225.0	NM_174989	106759.0	Mm.203952	NM_174989	ENSMUSG00000047123	Ticam1	AW046014|AW547018|TICAM-1|TRIF	toll-like receptor adaptor molecule 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-136721210-4	chr6	136721079	136721279	+	958.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145067, intron 16 of 25)	B4A|SINE|B4	-59286.0	NM_025806	66857.0	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	3.16955689968279	3.28427324898646	2.71352720317139	2.88020351673255	3.03745159668354	2.67885504229377	3.53317125843256	4.03244384765523	0.656082922684454	0.295940640883437	0.798938452555064
Merged-chr17-57228216-4	chr17	57228091	57228291	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009778)	promoter-TSS (NM_009778)	-55.0	NM_009778	12266.0	Mm.19131	NM_009778	ENSMUSG00000024164	C3	AI255234|ASP|HSE-MSF|Plp	complement component 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101451171-4	chr7	101451032	101451232	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001143849)	promoter-TSS (NM_001143849)	116.0	NR_152193	207728.0	Mm.247564	NM_001008548	ENSMUSG00000030653	Pde2a	CGS-PDE|cGSPDE	phosphodiesterase 2A, cGMP-stimulated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-17385433-2	chr10	17385333	17385533	+	662.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-289651.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-52501896-4	chr3	52501787	52501987	+	900.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15077.0	NR_153344	102631981.0	Mm.394225	NR_153344		Gm30173	-	predicted gene, 30173	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-149939478-3	chr1	149939383	149939583	+	919.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008869, intron 1 of 17)	intron (NM_008869, intron 1 of 17)	-17044.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-73038586-4	chr2	73038498	73038698	+	979.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58152.0	NM_001018042	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-47011851-2	chr14	47011751	47011951	+	827.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163433, intron 1 of 11)	intron (NM_001163433, intron 1 of 11)	10511.0	NM_001163433	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	-1.36015291771705	-1.32842431658676	-1.33874579108173	-1.34722415754512	-1.35969949349639	-1.32618761000664	-1.33640923549635	-0.791042329471244	2.42373733289067	0.484013421080845	1
Merged-chr17-56520388-2	chr17	56520288	56520488	+	636.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TGGA)n|Simple_repeat|Simple_repeat	-7905.0	NM_011483	20834.0	Mm.76862	NM_011483	ENSMUSG00000044526	Znrf4	1700094M01Rik|Ssrzf1|spzn	zinc and ring finger 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-56708347-4	chr18	56708232	56708432	+	978.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010721, exon 1 of 11)	exon (NM_010721, exon 1 of 11)	519.0	NM_010721	16906.0	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-66019310-2	chr5	66019210	66019410	+	947.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001127382, exon 8 of 8)	exon (NM_001127382, exon 8 of 8)	-15025.0	NR_027961	231253.0	Mm.436542	NM_177679	ENSMUSG00000054598	9130230L23Rik	-	RIKEN cDNA 9130230L23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-106893623-4	chr8	106893535	106893735	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011574)	promoter-TSS (NM_011574)	-5.0	NM_011574	21771.0	Mm.10665	NM_011574	ENSMUSG00000041438	Utp4	Cirh1a|Cirhin|Naic|Teg-292|Tex292	UTP4 small subunit processome component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-74991254-4	chr18	74991133	74991333	+	928.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9244.0	NM_001002239	319195.0	Mm.276337	NM_001002239	ENSMUSG00000062328	Rpl17	-	ribosomal protein L17	protein-coding	-1.36015291771705	-1.32842431658676	-1.33874579108173	-1.34722415754512	-1.35969949349639	-1.32618761000664	-1.33640923549635	-0.791042329471244	2.42373733289067	0.484013421080845	1
Merged-chr3-90476007-4	chr3	90475858	90476058	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026374)	promoter-TSS (NM_026374)	-243.0	NM_026374	67781.0	Mm.227258	NM_026374	ENSMUSG00000001016	Ilf2	6230405A16Rik|TEG-267|Tex261|Tex267	interleukin enhancer binding factor 2	protein-coding	2.69944903903155	1.83179631374658	1.94573796272792	1.53728315449298	2.78032309663763	2.3194187618185	1.78756822593912	2.28658115898104	0.584934525664984	0.527578613608006	0.948864528363842
Merged-chr2-50943362-4	chr2	50943263	50943463	+	696.19165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33679.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-80237057-4	chr17	80236959	80237159	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12608.0	NM_001355458	67242.0	Mm.279985	NM_026053	ENSMUSG00000055760	Gemin6	2610019B15Rik|2810470M17Rik	gem nuclear organelle associated protein 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21002833-4	chr9	21002716	21002916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023167)	promoter-TSS (NM_023167)	79.0	NM_001357899	66163.0	Mm.427576	NM_023167	ENSMUSG00000003299	Mrpl4	1110017G11Rik	mitochondrial ribosomal protein L4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118401981-4	chr11	118401882	118402082	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011150)	promoter-TSS (NM_011150)	-23.0	NM_011150	19039.0	Mm.3152	NM_011150	ENSMUSG00000033880	Lgals3bp	90K|CyCAP|MAC-2BP|Ppicap|Tango10b	lectin, galactoside-binding, soluble, 3 binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69267636-2	chr11	69267536	69267736	+	849.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30614.0	NM_008192	14919.0	Mm.291816	NM_008192	ENSMUSG00000020890	Gucy2e	GC-E|GC1|ROS-GC1	guanylate cyclase 2e	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-111334538-2	chr8	111334438	111334638	+	587.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310613, intron 1 of 10)	B3|SINE|B2	3667.0	NM_001310613	74568.0	Mm.207971	NM_029005	ENSMUSG00000012519	Mlkl	9130019I15Rik	mixed lineage kinase domain-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-142758252-4	chr2	142758132	142758332	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355123, intron 13 of 26)	intron (NM_001355123, intron 13 of 26)	143232.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-56548064-3	chr8	56547962	56548162	+	851.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001009951, intron 1 of 10)	ORR1E|LTR|ERVL-MaLR	2504.0	NM_001009951	382010.0	Mm.425534	NM_001009951	ENSMUSG00000038215	Cep44	4933440G23Rik|mKIAA1712	centrosomal protein 44	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-23272219-4	chr11	23272118	23272318	+	883.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001035226, intron 5 of 25)	B2_Mm1t|SINE|B2	16177.0	NM_134014	103573.0	Mm.217547	NM_134014	ENSMUSG00000020290	Xpo1	AA420417|Crm1|Exp1	exportin 1	protein-coding	0.346016435604311	0.836098365304934	0.392896369770999	0.209841528051593	0.350415751600575	0.847388948362295	0.397874920582774	0.210707694784182	0.0398551657391268	0.98209732970039	1
Merged-chr11-80301003-4	chr11	80300959	80301159	+	913.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_139228, exon 1 of 9)	5' UTR (NM_139228, exon 1 of 9)	147.0	NM_139228	246104.0	Mm.194148	NM_139228	ENSMUSG00000017692	Rhbdl3	AI847581|Rhbdl4|Rhomr1|Vrho	rhomboid like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-21642547-2	chr5	21642447	21642647	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199632, intron 1 of 20)	intron (NM_001199632, intron 1 of 20)	3058.0	NM_001199632	320118.0	Mm.442295	NM_177076	ENSMUSG00000048520	Fbxl13	4921539K22Rik	F-box and leucine-rich repeat protein 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-99363285-4	chr5	99363179	99363379	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-110352.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84983569-1	chr8	84983469	84983669	+	973.5	f1_balb.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-4821.0	NM_008416	16477.0	Mm.1167	NM_008416	ENSMUSG00000052837	Junb	-	jun B proto-oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-118115424-2	chr7	118115324	118115524	+	582.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_170669, intron 1 of 4)	intron (NM_170669, intron 1 of 4)	723.0	NM_170669	267019.0	Mm.288212	NM_170669	ENSMUSG00000008683	Rps15a	A630031B11Rik	ribosomal protein S15A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-96267789-3	chr10	96267706	96267906	+	722.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41599.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-117374951-7	chr5	117374824	117375024	+	996.160706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021539, intron 5 of 8)	intron (NM_021539, intron 5 of 8)	14099.0	NM_028128	72151.0	Mm.27997	NM_028128	ENSMUSG00000029363	Rfc5	2610020K06Rik|2610209F07Rik|36.5kDa|36kDa|Recc5	replication factor C (activator 1) 5	protein-coding	0.749508892216519	0.603155379735013	0.717399554253342	0.566581059875541	0.757532784714257	0.607807653406035	0.724443577541719	0.56936510244063	0.0390506733613599	0.979376078207063	1
Merged-chr8-33606566-5	chr8	33606450	33606650	+	853.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017374, intron 1 of 6)	RMER6B|LTR|ERVK	6929.0	NM_017374	19053.0	Mm.29301	NM_017374	ENSMUSG00000009630	Ppp2cb	AI115466|D8Ertd766e|PP2Ac	protein phosphatase 2 (formerly 2A), catalytic subunit, beta isoform	protein-coding	2.57543061846952	3.54226283657888	3.67241334108657	2.15997691682515	2.05561961063043	3.24695795056697	3.3804593901917	1.74769888019372	-0.57867663312261	0.466393694810883	0.922971992343415
Merged-chr17-37029521-2	chr17	37029416	37029616	+	905.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6118.0	NM_010814	17441.0	Mm.210857	NM_010814	ENSMUSG00000076439	Mog	B230317G11Rik	myelin oligodendrocyte glycoprotein	protein-coding	-1.32440223303897	-1.29339468673833	-0.717877708899544	-1.31276353204239	-1.32392690786997	-1.29109028300231	-1.30162128075409	-1.31119997543009	-2.49510383040271	0.470258445164311	1
Merged-chr1-134099306-4	chr1	134099195	134099395	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11947.0	NM_001284525	71884.0	Mm.328268	NM_027979	ENSMUSG00000026450	Chit1	2300002L19Rik	chitinase 1 (chitotriosidase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-106532036-1	chr9	106531936	106532136	+	750.0	f1_c57bl6.idr	Intergenic	Intergenic	17463.0	NM_029300	75470.0	Mm.63799	NM_029300	ENSMUSG00000066382	Iqcf5	1700007L12Rik	IQ motif containing F5	protein-coding	0.796965536679222	1.39392420928326	1.93353933265557	0.449000043757359	0.432062488303665	0.949837227619366	0.463931652000983	0.451054530645197	-3.24878542884583	0.0595123429534693	0.361228882338478
Merged-chr8-126488470-2	chr8	126488370	126488570	+	857.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB3|LINE|L1	-13405.0	NM_001159907	212728.0	Mm.482479	NM_001159907	ENSMUSG00000090290	Tarbp1	Gm17296|Gm179	TAR RNA binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-121361347-2	chr10	121361247	121361447	+	733.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3743.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-164926974-3	chr2	164926887	164927087	+	820.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15237.0	NM_199027	329559.0	Mm.330776	NM_199027	ENSMUSG00000039834	Zfp335	1810045J01Rik|NIF-1|Nif1|Znf335	zinc finger protein 335	protein-coding	0.78914150012742	0.348302534839097	1.03539835537131	0.327510056683543	0.504499016422382	0.350892999628907	1.69234941380478	0.329120348574641	0.936838757002338	0.596080455148942	0.971444349480713
Merged-chr9-120128196-2	chr9	120128096	120128296	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011029, intron 1 of 6)	intron (NM_011029, intron 1 of 6)	430.0	NM_011029	16785.0	Mm.4071	NM_011029	ENSMUSG00000032518	Rpsa	67kDa|67lr|AL022858|Lamr|Lamr1|Lamrl1|MLR|P40|P40-3|P40-8	ribosomal protein SA	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91269872-2	chr16	91269772	91269972	+	584.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_016968, exon 1 of 1)	5' UTR (NM_016968, exon 1 of 1)	103.0	NM_016968	50914.0	Mm.39300	NM_016968	ENSMUSG00000046160	Olig1	AI836478|AW494459|Bhlhb6|Olg-1|Oligo1|bHLHe21	oligodendrocyte transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-102755101-4	chr2	102754987	102755187	+	897.837524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077514, intron 6 of 10)	intron (NM_001077514, intron 6 of 10)	-8327.0	NR_153853	102637542.0	Mm.371582	NR_153852		Gm13872	-	predicted gene 13872	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-103012724-4	chr14	103012634	103012834	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045657, intron 2 of 2)	intron (NR_045657, intron 2 of 2)	21069.0	NR_045657	71264.0	Mm.399572	NR_045657	ENSMUSG00000114980	4933432I03Rik	-	RIKEN cDNA 4933432I03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-92292676-1	chr5	92292576	92292776	+	764.0	f1_c57bl6.idr	exon (NM_172713, exon 14 of 22)	exon (NM_172713, exon 14 of 22)	-14495.0	NM_025972	67111.0	Mm.28890	NM_025972	ENSMUSG00000029413	Naaa	2210023K21Rik|3830414F09Rik|Asahl	N-acylethanolamine acid amidase	protein-coding	2.81902270095219	1.9084975123962	3.05573565395252	1.33762684784804	2.77659731321216	2.42227648560891	2.20097461086721	1.97975811329306	-0.187157608979577	0.83897030065168	0.998431161219273
Merged-chr2-117264005-2	chr2	117263905	117264105	+	928.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_026620, intron 6 of 7)	intron (NM_026620, intron 6 of 7)	14266.0	NM_026620	68215.0	Mm.219389	NM_026620	ENSMUSG00000027349	Fam98b	2610510H03Rik	family with sequence similarity 98, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-120478785-2	chr5	120478685	120478885	+	574.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145565, intron 1 of 7)	intron (NM_145565, intron 1 of 7)	2238.0	NM_145565	231691.0	Mm.28685	NM_145565	ENSMUSG00000029597	Sds	4432411H13Rik|SDH	serine dehydratase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71638312-1	chr8	71638212	71638412	+	594.0	f1_balb.idr	intron (NM_001029873, intron 34 of 41)	intron (NM_001029873, intron 34 of 41)	-7206.0	NR_106035	102466799.0		NR_106035	ENSMUSG00000098976	Mir6769b	Gm27546|mmu-mir-6769b	microRNA 6769b	ncRNA	0.800061545323409	0.509271221749205	0.497434001147829	0.488150127707499	0.47478943754516	1.24072348701866	1.58736144514804	1.24331372726367	3.30243661093193	0.0598222335700399	0.362498564835019
Merged-chr6-134366854-4	chr6	134366749	134366949	+	905.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153848, intron 3 of 8)	intron (NR_153848, intron 3 of 8)	-29480.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	4.26102113527276	3.8900442263502	4.17914949372894	4.38009269999727	3.95374235954649	4.71252035294905	4.14874532383668	3.89565976656043	0.0213617047313532	0.960126311677683	0.998431161219273
Merged-chr1-184032813-2	chr1	184032713	184032913	+	918.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_028516)	TTS (NM_028516)	1185.0	NM_028516	73363.0	Mm.50115	NM_028516	ENSMUSG00000044854	1700056E22Rik	-	RIKEN cDNA 1700056E22 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-180578922-4	chr2	180578839	180579039	+	805.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2283.0	NM_028479	73247.0	Mm.426558	NM_028479	ENSMUSG00000027569	Mrgbp	1600027N09Rik|AW060503|C80444	MRG/MORF4L binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-170164329-4	chr2	170164203	170164403	+	943.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21628.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	0.13964238853256	-0.0963567834424372	0.435586751534628	-0.104149555974493	0.34362436489299	-0.0953609830600123	-0.0997927099391044	0.052469300888302	-0.414832028247196	0.850503601494663	1
Merged-chr5-145608005-2	chr5	145607905	145608105	+	705.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVB4_2-I_MM-int|LTR|ERVK	-23275.0	NM_001105159	100041375.0	Mm.489591	NM_001105159	ENSMUSG00000075552	Cyp3a41b	-	cytochrome P450, family 3, subfamily a, polypeptide 41B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-3899692-2	chr11	3899592	3899792	+	542.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_173745, exon 2 of 2)	3' UTR (NM_173745, exon 2 of 2)	4452.0	NM_173745	75219.0	Mm.32588	NM_173745	ENSMUSG00000047205	Dusp18	4930527G07Rik|AI430870|BB028064|DSP18|DUSP20|LMWDSP20	dual specificity phosphatase 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117255410-2	chr8	117255310	117255510	+	708.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1609.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-76610539-4	chr16	76610434	76610634	+	944.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61739.0	NR_155449	102632730.0		NR_155449		Gm30726	-	predicted gene, 30726	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-30218568-1	chr18	30218468	30218668	+	550.0	f1_c57bl6.idr	Intergenic	Intergenic	-54297.0	NM_181414	225326.0	Mm.194127	NM_181414	ENSMUSG00000033628	Pik3c3	5330434F23Rik|Vps34	phosphatidylinositol 3-kinase catalytic subunit type 3	protein-coding	0.84357630850255	0.304305290284218	0.297657990801775	0.717081737072607	0.667828213425314	0.925559438169348	0.299124407860919	0.293423372148292	0.0683096552760379	0.971421944394189	1
Merged-chr17-5732079-2	chr17	5731979	5732179	+	851.099976	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 8 of 8)	intron (NM_146073, intron 8 of 8)	-66578.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53355134-2	chr4	53355034	53355234	+	913.099976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-84902.0	NR_033139	381524.0	Mm.23351	NM_001033454	ENSMUSG00000086712	AI427809	Gm1659	expressed sequence AI427809	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-124617552-4	chr2	124617428	124617628	+	818.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291000, intron 1 of 18)	intron (NM_001291000, intron 1 of 18)	7232.0	NM_172537	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-138023631-1	chr4	138023531	138023731	+	735.0	f1_balb.idr	intron (NM_001355699, intron 1 of 32)	MTD|LTR|ERVL-MaLR	25806.0	NM_001355700	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	1.31380138116782	0.993556078952125	1.22361786821862	1.94248878127302	2.75593274631909	1.98100804890296	0.973993348885629	1.71076002430975	1.64489241353235	0.168716926193809	0.63531908954007
Merged-chr6-125165184-2	chr6	125165095	125165295	+	1000.0	f0_balb.idr|f1_balb.idr	intron (NM_001289726, intron 2 of 6)	CpG	578.0	NM_008084	14433.0	Mm.304088	NM_008084	ENSMUSG00000057666	Gapdh	Gapd	glyceraldehyde-3-phosphate dehydrogenase	protein-coding	5.14108791836162	5.01040367601837	5.15317693783411	4.73386121293336	5.38566605418687	5.20024505393881	4.39854857082686	3.4888927507482	-0.255733714351959	0.534758413743828	0.95286627222167
Merged-chr5-98033226-4	chr5	98033123	98033323	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2261.0	NM_133738	71914.0	Mm.24842	NM_133738	ENSMUSG00000029338	Antxr2	2310046B19Rik|AW561899|CMG-2|CMG2|cI-35	anthrax toxin receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-96914266-4	chr7	96914182	96914382	+	858.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37245.0	NM_153591	244141.0	Mm.274864	NM_153591	ENSMUSG00000018995	Nars2	AI875199	asparaginyl-tRNA synthetase 2 (mitochondrial)(putative)	protein-coding	1.11872267737323	0.63195394966717	0.815029586240183	1.2966287792735	1.22609419161565	1.41873573613918	0.623974644500561	0.615136182860548	0.156343985357549	0.920857027165159	0.998431161219273
Merged-chr9-59541742-6	chr9	59541758	59541958	+	749.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010421, intron 1 of 13)	intron (NM_010421, intron 1 of 13)	2318.0	NM_010421	15211.0	Mm.2284	NM_010421	ENSMUSG00000025232	Hexa	Hex-1	hexosaminidase A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-50537815-2	chr6	50537715	50537915	+	632.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28659.0	NM_007808	13063.0	Mm.35389	NM_007808	ENSMUSG00000063694	Cycs	-	cytochrome c, somatic	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-147432412-5	chr4	147432295	147432495	+	879.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039209, intron 1 of 2)	intron (NM_001039209, intron 1 of 2)	-120882.0	NM_001014397	433804.0	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154	zinc finger protein 985	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-116432121-1	chr12	116432021	116432221	+	581.666687	f1_c57bl6.idr	intron (NM_133762, intron 16 of 28)	RLTR19-int|LTR|ERVK	26719.0	NM_133762	76044.0	Mm.491196	NM_133762	ENSMUSG00000042029	Ncapg2	5830426I05Rik|Luzp5|Mtb|mCAP-G2	non-SMC condensin II complex, subunit G2	protein-coding	0.696740540382554	-0.0564462202740972	0.111945583924995	0.232376495957582	0.195636530083562	-0.0553248687260122	-0.0603209679470464	-0.0645781247567999	-2.31624573522412	0.290897176583633	1
Merged-chr1-191396248-4	chr1	191396146	191396346	+	975.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_144880, exon 1 of 13)	exon (NM_144880, exon 1 of 13)	795.0	NM_144880	226849.0	Mm.205569	NM_144880	ENSMUSG00000026626	Ppp2r5a	PR61alpha	protein phosphatase 2, regulatory subunit B', alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-10177939-2	chr18	10177839	10178039	+	550.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009071, intron 1 of 32)	intron (NM_009071, intron 1 of 32)	3853.0	NM_009071	19877.0	Mm.6710	NM_009071	ENSMUSG00000024290	Rock1	1110055K06Rik|Rock-I	Rho-associated coiled-coil containing protein kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-121280373-4	chr7	121280279	121280479	+	962.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	-111917.0	NM_001081327	195646.0	Mm.247449	NM_177575	ENSMUSG00000046321	Hs3st2	6430516N12Rik|A830061E14Rik|AW491345	heparan sulfate (glucosamine) 3-O-sulfotransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-149636738-4	chr5	149636644	149636844	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013559)	promoter-TSS (NM_013559)	-408.0	NM_001347534	15505.0	Mm.270681	NM_013559	ENSMUSG00000029657	Hsph1	105kDa|AI790491|Hsp105|Hsp110|hsp-E7I|hsp110/105	heat shock 105kDa/110kDa protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-58978271-4	chr3	58978185	58978385	+	732.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28693.0	NM_177855	329650.0	Mm.240059	NM_177855	ENSMUSG00000056476	Med12l	A130035F20|A630079M02|AU044581|TRALPUSH	mediator complex subunit 12-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-13411757-2	chr8	13411657	13411857	+	564.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011881, intron 4 of 6)	intron (NM_011881, intron 4 of 6)	6676.0	NM_011881	24013.0	Mm.257501	NM_011881	ENSMUSG00000031450	Grk1	Gprk1|Rhok|Rk	G protein-coupled receptor kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69031865-3	chr11	69031750	69031950	+	877.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001281465, intron 15 of 22)	intron (NM_001281465, intron 15 of 22)	-13787.0	NM_011496	20877.0	Mm.3488	NM_011496	ENSMUSG00000020897	Aurkb	AIM-1|AIRK2|AL022959|Aik2|Aim1|Ark2|AurB|IPL1|STK-1|Stk12|Stk5	aurora kinase B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-32482305-4	chr14	32482192	32482392	+	840.5166630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16383.0	NM_009891	12647.0	Mm.442817	NM_009891	ENSMUSG00000021919	Chat	B230380D24Rik|CHOACTase	choline acetyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-112197439-2	chr7	112197339	112197539	+	589.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-28397.0	NM_177282	320878.0	Mm.52312	NM_177282	ENSMUSG00000038244	Mical2	5330438E18Rik|9530064J02|MICAL-2|mKIAA0750	microtubule associated monooxygenase, calponin and LIM domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-109947555-2	chr8	109947455	109947655	+	795.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_212447)	TTS (NM_212447)	14650.0	NM_212447	73608.0	Mm.86833	NM_028584	ENSMUSG00000001672	Marveld3	1810006A16Rik|AI642133|Marvd3|Mrvldc3	MARVEL (membrane-associating) domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122983355-1	chr8	122983255	122983455	+	678.0	f0_balb.idr	intron (NM_001081379, intron 1 of 12)	intron (NM_001081379, intron 1 of 12)	58929.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-41042425-3	chr3	41042324	41042524	+	924.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	40622.0	NM_027558	70804.0	Mm.40321	NM_027558	ENSMUSG00000049940	Pgrmc2	4631434O19Rik|5730409G06Rik|DG6|PMBP	progesterone receptor membrane component 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166519773-2	chr2	166519673	166519873	+	688.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-44749.0	NR_152154	433503.0	Mm.491336	NR_152154		Gm29679	-	predicted gene, 29679	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-61113413-4	chr18	61113348	61113548	+	886.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037859, intron 6 of 21)	intron (NM_001037859, intron 6 of 21)	-4020.0	NR_105949	102466212.0		NR_105949	ENSMUSG00000098389	Mir6983	Gm27496|mmu-mir-6983	microRNA 6983	ncRNA	0.55176872538347	1.25093940947984	0.565628197298684	1.06899878851608	0.808921538480223	0.916577542545888	0.735517194551871	0.852230927770868	-0.440354396572515	0.778268909102163	1
Merged-chr9-15060862-1	chr9	15060762	15060962	+	769.0	f0_balb.idr	exon (NM_001164797, exon 16 of 20)	exon (NM_001164797, exon 16 of 20)	-15384.0	NM_019482	55991.0	Mm.142253	NM_019482	ENSMUSG00000031934	Panx1	AI847747	pannexin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-60012982-2	chr7	60012882	60013082	+	556.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001349693, intron 2 of 12)	RLTR14-int|LTR|ERV1	-7783.0	NM_033174	84704.0	Mm.274995	NM_033174	ENSMUSG00000102627	Snurf	2410045I01Rik	SNRPN upstream reading frame	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83643551-2	chr11	83643451	83643651	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C2|LTR|ERVK	5827.0	NM_011337	20302.0	Mm.1282	NM_011337	ENSMUSG00000000982	Ccl3	AI323804|G0S19-1|LD78alpha|MIP-1alpha|MIP1-(a)|MIP1-alpha|Mip1a|Scya3	chemokine (C-C motif) ligand 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-126491636-4	chr2	126491549	126491749	+	918.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080944)	promoter-TSS (NM_001080944)	-96.0	NM_001080944	241633.0	Mm.222235	NM_001080944	ENSMUSG00000060131	Atp8b4	Im	ATPase, class I, type 8B, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-154962179-2	chr4	154962079	154962279	+	561.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010419, exon 3 of 3)	3' UTR (NM_010419, exon 3 of 3)	1256.0	NM_010419	15208.0	Mm.137268	NM_010419	ENSMUSG00000048001	Hes5	bHLHb38	hes family bHLH transcription factor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-113814600-3	chr5	113814523	113814723	+	856.7333369999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14271.0	NM_146162	231633.0	Mm.41681	NM_146162	ENSMUSG00000054675	Tmem119	AW208946|BC025600|obif	transmembrane protein 119	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-36130384-3	chr8	36130260	36130460	+	940.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172911, intron 4 of 5)	intron (NM_172911, intron 4 of 5)	-25650.0	NR_151736	330738.0	Mm.128075	NR_151736	ENSMUSG00000109704	Gm38414	A230084N10|Gm45568	predicted gene, 38414	ncRNA	-0.720965238144137	-1.06023319993144	-1.07103616304892	-0.919297103823281	-1.07946736269062	-1.05789215275824	-0.900749742161233	-1.07662295167963	-1.46454369649492	0.627715614532451	1
Merged-chr8-37062458-4	chr8	37062357	37062557	+	845.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38219.0	NR_126063	414128.0	Mm.450976	NR_126063	ENSMUSG00000110242	G630064G18Rik	-	RIKEN cDNA G630064G18 gene	ncRNA	1.16855954392296	3.62844584121988	2.16177235149599	2.48269622821265	1.17863510493828	2.41908162111575	2.79093643955672	2.49670818544649	-0.610359805961421	0.545221057297769	0.956332845226679
Merged-chr7-29043672-5	chr7	29043602	29043802	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009109, intron 84 of 105)	intron (NM_009109, intron 84 of 105)	39992.0	NR_035489	100316710.0		NR_035489	ENSMUSG00000089219	Mir1963	mir-1963|mmu-mir-1963	microRNA 1963	ncRNA	4.47173095955511	3.79626339703159	5.56842615909439	4.76339213699507	3.46867039232093	4.07961577898848	4.59121050922355	2.87688372954611	-1.16082092348001	0.0241071983596076	0.203639753311796
Merged-chr5-102029512-2	chr5	102029412	102029612	+	743.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 2 of 66)	intron (NM_172882, intron 2 of 66)	40409.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	-1.22315906685268	-1.19557143632602	-1.20673282037136	-0.55836125556573	-1.22265483704505	-1.19315271784257	-1.20420612767407	-1.21425999345206	-2.67891099987134	0.437057736398543	1
Merged-chr16-91464993-4	chr16	91464880	91465080	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_077219)	promoter-TSS (NR_077219)	-124.0	NR_077219	100503120.0	Mm.387130	NR_077219	ENSMUSG00000084866	A930006K02Rik	-	RIKEN cDNA A930006K02 gene	ncRNA	5.63140726151149	5.36120789157209	5.48850231446459	5.38407711398526	5.98164186847806	5.89967864312185	5.83371263395572	5.48977657898069	0.382508413945149	0.136698149377184	0.577012459125694
Merged-chr11-4271003-3	chr11	4270888	4271088	+	959.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008501, exon 4 of 4)	3' UTR (NM_008501, exon 4 of 4)	4192.0	NM_001039537	16878.0	Mm.4964	NM_008501	ENSMUSG00000034394	Lif	-	leukemia inhibitory factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134173523-4	chr6	134173395	134173595	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 3 of 8)	intron (NM_001303102, intron 3 of 8)	137795.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-88564042-2	chr5	88563942	88564142	+	720.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289775)	promoter-TSS (NM_001289775)	-998.0	NM_001289774	52822.0	Mm.270469	NM_027530	ENSMUSG00000029291	Rufy3	2810428M05Rik|6330416M07Rik|AW455998|AW538594|D5Bwg0860e|Ripx|Rpipx	RUN and FYVE domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-38719170-4	chr9	38719065	38719265	+	928.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145957, intron 1 of 18)	intron (NM_001145957, intron 1 of 18)	897.0	NM_172767	67776.0	Mm.290950	NM_172767	ENSMUSG00000023186	Vwa5a	5830475I06Rik|AW552491|BCSC-1|E130119J22|Loh11cr2a	von Willebrand factor A domain containing 5A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128305910-2	chr10	128305810	128306010	+	603.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252327, intron 2 of 25)	PB1D10|SINE|Alu	2575.0	NM_001252326	103135.0	Mm.244183	NM_133992	ENSMUSG00000005682	Pan2	1200014O24Rik|AI047843|AW742773|Usp52|mKIAA0710	PAN2 poly(A) specific ribonuclease subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-11465440-4	chr8	11465328	11465528	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011227, intron 1 of 1)	B2_Mm2|SINE|B2	-12501.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32395139-2	chr2	32395039	32395239	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133783)	promoter-TSS (NM_133783)	-751.0	NM_133783	96979.0	Mm.28048	NM_133783	ENSMUSG00000026820	Ptges2	0610038H10Rik|C79137|Gbf1|Mpges2|Pges2	prostaglandin E synthase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27593497-4	chr2	27593407	27593607	+	936.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	78360.0	NM_080848	140858.0	Mm.28265	NM_080848	ENSMUSG00000026917	Wdr5	2410008O07Rik|AA408785|AA960360|Big|Big-3	WD repeat domain 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135187098-4	chr5	135186964	135187164	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011714)	promoter-TSS (NM_011714)	-259.0	NM_011714	22385.0	Mm.40331	NM_011714	ENSMUSG00000002748	Baz1b	C87820|WSTF|Wbscr9	bromodomain adjacent to zinc finger domain, 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-11575745-3	chr8	11575598	11575798	+	775.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17288.0	NM_001302459	26356.0	Mm.25709	NM_011919	ENSMUSG00000045969	Ing1	2610028J21Rik|AA407184|AI875420|mING1h|p33Ing1|p37Ing1b	inhibitor of growth family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-101766957-4	chr5	101766853	101767053	+	966.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173370, intron 1 of 12)	intron (NM_173370, intron 1 of 12)	1823.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135940564-1	chr5	135940464	135940664	+	755.0	f1_balb.idr	Intergenic	Intergenic	-5923.0	NM_018871	22628.0	Mm.233813	NM_018871	ENSMUSG00000051391	Ywhag	14-3-3gamma|D7Bwg1348e	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-23820809-2	chr17	23820709	23820909	+	651.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_175229, exon 10 of 14)	exon (NM_175229, exon 10 of 14)	-2482.0	NR_039586	100628593.0		NR_039586	ENSMUSG00000092981	Mir5125	mmu-mir-5125|mu-mir-5125	microRNA 5125	ncRNA	-0.599331871059574	-0.947800116451024	-0.95790711855856	-0.545752331378273	-0.96275671057501	-0.945273172251724	-0.956821167625019	-0.959569917902332	-2.82233379114307	0.363876369831273	1
Merged-chr11-75570475-1	chr11	75570375	75570575	+	599.0	f1_c57bl6.idr	intron (NM_001199284, intron 11 of 13)	intron (NM_001199284, intron 11 of 13)	-17604.0	NM_008850	18738.0	Mm.3128	NM_008850	ENSMUSG00000017781	Pitpna	Pitpn|vb|vibrator	phosphatidylinositol transfer protein, alpha	protein-coding	3.5778480629316	3.44517230074342	3.33076274246862	2.1033198388252	3.37881991180495	3.77075719543539	2.96497567422146	2.3072352166913	-0.0285689137118313	0.966632000584456	0.998431161219273
Merged-chr11-80058811-2	chr11	80058711	80058911	+	646.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_018776, intron 4 of 7)	intron (NM_018776, intron 4 of 7)	22180.0	NM_001277106	54394.0	Mm.272093	NM_018776	ENSMUSG00000017561	Crlf3	BB164954|Creme9|Cytor4	cytokine receptor-like factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133302082-2	chr4	133301991	133302191	+	669.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_199306, intron 10 of 15)	intron (NM_199306, intron 10 of 15)	-24301.0	NR_110978	52174.0	Mm.244748	NM_025667	ENSMUSG00000028857	Tmem222	5730406H10Rik|AA409341|D4Ertd196e	transmembrane protein 222	protein-coding	1.69483342518499	2.82212017685808	2.53444603162129	1.95529727445631	1.70829630978729	2.26038013829658	2.18410924531753	3.08624968764154	0.199581777160774	0.822714164246871	0.998431161219273
Merged-chr7-38061254-4	chr7	38061147	38061347	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-41695.0	NM_011274	19777.0	Mm.387220	NM_011274	ENSMUSG00000030421	Uri1	C80913|NNX3|Rmp	URI1, prefoldin-like chaperone	protein-coding	4.10842586058264	3.54397754328486	3.77402581515721	3.58933247492419	4.30860987789932	4.63848927991789	3.22639086520594	4.23649844308663	0.572961492788238	0.239080065074906	0.735635286471347
Merged-chr14-122913099-4	chr14	122912972	122913172	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_155287)	promoter-TSS (NR_155287)	42.0	NR_155286	105245866.0	Mm.390754	NM_001039531	ENSMUSG00000075463	Gm15735	4930594M22Rik|F930011C10Rik	predicted gene 15735	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-130832745-1	chr2	130832645	130832845	+	1000.0	f1_c57bl6.idr	intron (NM_029432, intron 1 of 36)	intron (NM_029432, intron 1 of 36)	6942.0	NM_001311147	228602.0	Mm.271990	NM_028367	ENSMUSG00000027309	4930402H24Rik	2810487F15Rik|AI413763|C78926	RIKEN cDNA 4930402H24 gene	protein-coding	2.67999082202507	2.42643624262056	3.37903894080543	3.38204753634544	1.00392733019989	1.15112258384381	1.41667304203814	1.06628278943667	-5.52855726601095	7.33856144179906e-06	0.000357823563963862
Merged-chr13-34229078-4	chr13	34228990	34229190	+	891.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033167, intron 3 of 10)	intron (NM_001033167, intron 3 of 10)	66126.0	NM_001110515	69666.0	Mm.24788	NM_001101430	ENSMUSG00000071451	Psmg4	PAC-4|mPAC4	proteasome (prosome, macropain) assembly chaperone 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-85173754-4	chr16	85173663	85173863	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001198824)	promoter-TSS (NM_001198824)	-56.0	NM_001198826	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	5.17870600923173	4.63566544666333	5.21973388188507	5.58522476384799	5.31536307848392	5.26925465391511	5.49914797914279	5.08022699028037	0.11190413121225	0.71606252487362	0.998431161219273
Merged-chr18-73754448-4	chr18	73754370	73754570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053255)	promoter-TSS (NM_053255)	9.0	NM_053255	114615.0	Mm.50642	NM_053255	ENSMUSG00000036941	Elac1	2610018O07Rik|8430417G19Rik	elaC ribonuclease Z 1	protein-coding	-0.682472716642334	-0.452487317513351	0.250139392262373	-0.676842641460479	-0.681632224830864	-0.668156523227292	-0.67251357215385	-0.676252878996527	-3.51851262201377	0.198675630463621	1
Merged-chr19-3578899-2	chr19	3578799	3578999	+	583.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3150.0	NM_028999	52036.0	Mm.284686	NM_028999	ENSMUSG00000024908	Ppp6r3	4930528G08Rik|9130026N02Rik|D19Bwg1430e|D19Ertd703e|Pp6r3|Ppcs3|Pptcs3|Sapl|Saps3|mKIAA1558	protein phosphatase 6, regulatory subunit 3	protein-coding	1.09937674077406	0.909885992383813	0.538177347861477	0.701264028198496	0.67390326744267	1.18567921092746	0.540048444906473	1.08746241762932	0.364433809231112	0.815779710719406	1
Merged-chr2-160725563-2	chr2	160725463	160725663	+	564.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR25B|LTR|ERVK	-5747.0	NM_021280	18803.0	Mm.44463	NM_021280	ENSMUSG00000016933	Plcg1	AI894140|Cded|Plc-1|Plc-gamma1|Plcg-1	phospholipase C, gamma 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-42947041-4	chr4	42946943	42947143	+	942.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2824.0	NM_001355438	56323.0	Mm.20437	NM_019874	ENSMUSG00000036052	Dnajb5	1110058L06Rik|AI462558|Hsc40|Hsp40-3	DnaJ heat shock protein family (Hsp40) member B5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-20197318-1	chr11	20197218	20197418	+	1000.0	f1_balb.idr	Intergenic	Intergenic	-4094.0	NM_008996	19324.0	Mm.271944	NM_008996	ENSMUSG00000020149	Rab1a	Gtbp|Rab-1|Rab1|Ypt1|mKIAA3012	RAB1A, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-15765615-1	chr6	15765515	15765715	+	553.0	f1_balb.idr	intron (NM_175088, intron 3 of 4)	intron (NM_175088, intron 3 of 4)	44954.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-92509125-4	chr5	92508989	92509189	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3432.0	NM_007644	12492.0	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5780388-2	chr19	5780288	5780488	+	725.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-8969.0	NR_155264	78891.0	Mm.276063	NM_023912	ENSMUSG00000024941	Scyl1	2810011O19Rik|C85140|Ntkl|mdf|mfd|p105	SCY1-like 1 (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-97783993-2	chr2	97783893	97784093	+	639.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	316336.0	NM_178725	241568.0	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26895778-2	chr17	26895678	26895878	+	950.125	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21313.0	NM_053173	16580.0	Mm.491138	NM_016761	ENSMUSG00000024301	Kifc5b	Hset|KNSL2|Kifc5a	kinesin family member C5B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-13835874-3	chr10	13835776	13835976	+	962.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025446, intron 1 of 5)	intron (NM_025446, intron 1 of 5)	33081.0	NM_025446	66253.0	Mm.45755	NM_025446	ENSMUSG00000019806	Aig1	1500031O19Rik|AV064870|AW413422|CGI-103	androgen-induced 1	protein-coding	1.05357389218617	2.07131219254384	0.876877264222498	0.854046359045692	2.10510642415962	1.64335130858528	0.883239139608235	2.87594660230682	1.95803365186536	0.126423057330521	0.55689342891744
Merged-chr6-49217775-2	chr6	49217675	49217875	+	822.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2821.0	NM_023670	140488.0	Mm.281018	NM_023670	ENSMUSG00000029814	Igf2bp3	2610101N11Rik|AA522010|AL022933|AU045931|IMP-3|IMP3|Koc13|Neilsen|mimp3	insulin-like growth factor 2 mRNA binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-80133130-4	chr15	80133044	80133244	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025609)	promoter-TSS (NM_025609)	-10.0	NM_025609	66513.0	Mm.288245	NM_025609	ENSMUSG00000022414	Tab1	2310012M03Rik|Map3k7ip1|b2b449Clo	TGF-beta activated kinase 1/MAP3K7 binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-120497132-2	chr5	120497032	120497232	+	555.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023625, intron 2 of 11)	intron (NM_023625, intron 2 of 11)	6491.0	NM_023625	71772.0	Mm.100065	NM_023625	ENSMUSG00000029598	Plbd2	1300012G16Rik|AU019810|P76	phospholipase B domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-159950386-4	chr2	159950282	159950482	+	654.554138	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040498, intron 1 of 6)	intron (NR_040498, intron 1 of 6)	3041.0	NR_040498	71081.0	Mm.383491	NR_040498	ENSMUSG00000085198	4933416E03Rik	-	RIKEN cDNA 4933416E03 gene	ncRNA	1.86075720540611	0.950015795200748	0.932406000467994	1.57713204686582	1.79684612653251	1.55913066487691	0.936327671061869	1.98510725826575	0.725603030729328	0.585280510820391	0.967268722441911
Merged-chr5-123724305-2	chr5	123724205	123724405	+	755.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3261.0	NM_027494	70650.0	Mm.279427	NM_027494	ENSMUSG00000029427	Zcchc8	5730565F05Rik	zinc finger, CCHC domain containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-21854103-3	chr14	21854008	21854208	+	847.111145	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_176925, exon 3 of 3)	3' UTR (NM_176925, exon 3 of 3)	-5198.0	NM_026965	69156.0	Mm.11827	NM_026965	ENSMUSG00000021773	Comtd1	1810030M08Rik|MT773	catechol-O-methyltransferase domain containing 1	protein-coding	3.88923228152891	4.32290916152887	3.13741601505466	3.97833843208492	3.64395666476456	3.68696083299369	3.47661829638927	3.27426118743882	-0.538615799268965	0.293348101601932	0.797649214211793
Merged-chr5-136989391-1	chr5	136989291	136989491	+	573.0	f1_c57bl6.idr	intron (NM_011962, intron 6 of 18)	ID4_|SINE|ID	-1432.0	NM_027318	70103.0	Mm.273147	NM_027318	ENSMUSG00000059518	Znhit1	2700001K05Rik|ZNFN4A1	zinc finger, HIT domain containing 1	protein-coding	0.924943788449653	0.765189745566609	0.114605454007896	0.109398517367797	0.508248941535711	0.122833142287338	0.116090090106324	0.110309702957421	-2.10027334581096	0.330005088160603	1
Merged-chr3-89902298-2	chr3	89902198	89902398	+	707.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_010559, intron 1 of 9)	intron (NM_010559, intron 1 of 9)	10898.0	NM_001310676	16194.0	Mm.2856	NM_010559	ENSMUSG00000027947	Il6ra	CD126|IL-6R|IL-6R-alpha|IL-6RA|Il6r	interleukin 6 receptor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-60665483-2	chr18	60665383	60665583	+	838.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_045401, intron 1 of 2)	intron (NR_045401, intron 1 of 2)	2073.0	NR_045401	328963.0	Mm.417203	NR_045401		G630071F17Rik	G630071F17	RIKEN cDNA G630071F17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-51479911-2	chr1	51479811	51480011	+	872.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1512.0	NM_001310549	109019.0	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106216886-4	chr11	106216771	106216971	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026009)	promoter-TSS (NM_026009)	-55.0	NM_001361643	72047.0	Mm.41367	NM_028074	ENSMUSG00000020705	Ddx42	1810047H21Rik|AW319508|AW556242|B430002H05Rik|RHELP|RNAHP|SF3b125	DEAD (Asp-Glu-Ala-Asp) box polypeptide 42	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-90128505-2	chr7	90128405	90128605	+	903.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_046006, intron 1 of 3)	intron (NR_046006, intron 1 of 3)	969.0	NR_046006	78329.0	Mm.389940	NR_046006	ENSMUSG00000097162	2310010J17Rik	-	RIKEN cDNA 2310010J17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-79161608-4	chr8	79161494	79161694	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001294279, intron 8 of 14)	ORR1D2|LTR|ERVL-MaLR	86989.0	NM_026315	67687.0	Mm.178707	NM_026315	ENSMUSG00000031682	1700011L22Rik	-	RIKEN cDNA 1700011L22 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-144776091-2	chr7	144775991	144776191	+	927.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37499.0	NM_001242349	101772.0	Mm.26700	NM_178642	ENSMUSG00000031075	Ano1	Tmem16a	anoctamin 1, calcium activated chloride channel	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-36792847-2	chr5	36792747	36792947	+	610.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3907.0	NM_026242	67568.0	Mm.332336	NM_026242	ENSMUSG00000055302	Mrfap1	9130413I22Rik|AL022827|Pam14	Morf4 family associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128056500-2	chr10	128056400	128056600	+	830.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2482.0	NM_019766	56351.0	Mm.305816	NM_019766	ENSMUSG00000071072	Ptges3	5730442A20Rik|Ptges|Tebp|cPGES|p23|sid3177	prostaglandin E synthase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-105426173-4	chr13	105426067	105426267	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR17|LTR|ERVK	-17526.0	NM_008308	15550.0	Mm.4716	NM_008308	ENSMUSG00000021721	Htr1a	Gpcr18	5-hydroxytryptamine (serotonin) receptor 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-62411160-3	chr10	62411051	62411251	+	819.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145419, intron 4 of 17)	intron (NM_145419, intron 4 of 17)	11306.0	NM_145419	216019.0	Mm.213213	NM_145419	ENSMUSG00000020080	Hkdc1	BC016235	hexokinase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-73693506-2	chr13	73693406	73693606	+	749.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359603)	promoter-TSS (NM_001359603)	-870.0	NM_001359603	74338.0	Mm.271635	NM_028878	ENSMUSG00000021565	Slc6a19	4632401C08Rik|B<0>AT1	solute carrier family 6 (neurotransmitter transporter), member 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126825913-2	chr8	126825813	126826013	+	754.825012	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CCCCCA)n|Simple_repeat|Simple_repeat	-23107.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-91024132-4	chr1	91024034	91024234	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111312, intron 1 of 12)	intron (NM_001111312, intron 1 of 12)	25407.0	NM_001111312	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56507333-4	chr17	56507238	56507438	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5145.0	NM_011483	20834.0	Mm.76862	NM_011483	ENSMUSG00000044526	Znrf4	1700094M01Rik|Ssrzf1|spzn	zinc and ring finger 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70697532-2	chr11	70697432	70697632	+	564.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252485, intron 1 of 7)	B2_Mm1t|SINE|B2	2623.0	NM_001252482	103844.0	Mm.101581	NM_213729	ENSMUSG00000057054	Inca1	AI842396	inhibitor of CDK, cyclin A1 interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-74931809-4	chr15	74931710	74931910	+	953.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23241.0	NM_001164039	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	5.123111035621	5.34163439798413	6.263320419966	5.6969132687591	4.95473518548128	4.71917267979573	5.44181911457612	4.12083738906514	-0.909319270297578	0.0114896568434856	0.120011232856768
Merged-chr8-84249717-4	chr8	84249616	84249816	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001007571)	promoter-TSS (NM_001007571)	45.0	NM_001007571	101966.0	Mm.200723	NM_001007571	ENSMUSG00000019362	D8Ertd738e	AA589584	DNA segment, Chr 8, ERATO Doi 738, expressed	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-31222636-2	chr6	31222536	31222736	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_040260, intron 1 of 5)	B3|SINE|B2	2285.0	NR_040259	73652.0	Mm.441297	NR_040257	ENSMUSG00000087380	2210408F21Rik	-	RIKEN cDNA 2210408F21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70461625-2	chr11	70461525	70461725	+	564.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001348337, intron 2 of 13)	MER102b|DNA|hAT-Charlie	-1641.0	NM_023158	66102.0	Mm.425692	NM_023158	ENSMUSG00000018920	Cxcl16	0910001K24Rik|AV290116|BB024863|CXCL16v1|CXCL16v2|SR-PSOX|Zmynd15|b2b498Clo	chemokine (C-X-C motif) ligand 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-31023455-2	chr4	31023355	31023555	+	736.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Rod|LINE|L1	358859.0	NR_040655	75332.0	Mm.108636	NR_040655		4930556G01Rik	-	RIKEN cDNA 4930556G01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-65758510-2	chr1	65758410	65758610	+	588.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	-168012.0	NM_001360779	12969.0	Mm.275362	NM_027010	ENSMUSG00000025945	Crygf	3110001K11Rik|Cryg-2|DGcry-2|Len-2	crystallin, gamma F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95674961-4	chr3	95674857	95675057	+	945.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	12960.0	NM_144899	229595.0	Mm.490574	NM_144899	ENSMUSG00000015850	Adamtsl4	ADAMTSL-4|Tsrc1	ADAMTS-like 4	protein-coding	1.40634309142336	1.07796633204521	1.04740194120867	1.66464060912072	2.81843542376134	1.6059245244312	1.89281233188592	2.80421186274265	2.95927420713936	0.0080919459981129	0.0935930283599216
Merged-chr16-23286857-2	chr16	23286757	23286957	+	684.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252505, intron 2 of 7)	intron (NM_001252505, intron 2 of 7)	-3613.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30806088-4	chr7	30805975	30806175	+	794.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	14902.0	NM_001168512	233079.0	Mm.97338	NM_146187	ENSMUSG00000051314	Ffar2	GPCR43|Gpr43	free fatty acid receptor 2	protein-coding	0.828226771185406	0.963729785340016	0.4744433569955	0.629704284253365	0.934246652669206	0.675576503381341	0.476039157058188	0.998983988268035	0.302825748547528	0.850599303630093	1
Merged-chr14-30521284-2	chr14	30521184	30521384	+	572.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133761, intron 7 of 9)	PB1D11|SINE|Alu	-27847.0	NM_009388	21881.0	Mm.290692	NM_009388	ENSMUSG00000021957	Tkt	p68	transketolase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95311700-2	chr3	95311600	95311800	+	659.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3490.0	NM_029789	76893.0	Mm.181009	NM_029789	ENSMUSG00000015714	Cers2	0610013I17Rik|AI225939|Lass2|TRH3	ceramide synthase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-69119078-3	chr8	69119006	69119206	+	738.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21847.0	NM_199364	211134.0	Mm.409446	NM_199364	ENSMUSG00000036306	Lzts1	F37|FEZ1|PSD-Zip70	leucine zipper, putative tumor suppressor 1	protein-coding	2.20837109724997	3.19935796817654	3.7258154845259	3.62682481611321	3.47728936178366	3.42119328231639	3.21613994275998	2.79296111732732	-0.0938778093623514	0.882600383367493	0.998431161219273
Merged-chr11-53785658-3	chr11	53785545	53785745	+	849.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033332, exon 4 of 4)	non-coding (NR_033332, exon 4 of 4)	15172.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-62208530-4	chr4	62208429	62208629	+	916.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290353)	promoter-TSS (NM_001290353)	17.0	NM_001290351	22696.0	Mm.5011	NM_009554	ENSMUSG00000028389	Zfp37	Tzn|Zfp-37	zinc finger protein 37	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-109476263-2	chr4	109476163	109476363	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_013876, exon 1 of 3)	5' UTR (NM_013876, exon 1 of 3)	242.0	NM_013876	29864.0	Mm.392580	NM_013876	ENSMUSG00000028557	Rnf11	-	ring finger protein 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46500969-2	chr19	46500869	46501069	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053100)	promoter-TSS (NM_053100)	-679.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-90570224-2	chr6	90570124	90570324	+	895.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356412, intron 10 of 22)	intron (NM_001356412, intron 10 of 22)	19431.0	NM_027406	107747.0	Mm.30035	NM_027406	ENSMUSG00000030088	Aldh1l1	1810048F20Rik|FDH|Fthfd|Neut2	aldehyde dehydrogenase 1 family, member L1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-101923409-2	chr5	101923309	101923509	+	637.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 19 of 66)	intron (NM_172882, intron 19 of 66)	146512.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-93956765-2	chr11	93956665	93956865	+	732.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008705)	promoter-TSS (NM_008705)	-509.0	NM_008705	18103.0	Mm.1260	NM_008705	ENSMUSG00000020857	Nme2	NM23-H2|NM23B|nm23-M2	NME/NM23 nucleoside diphosphate kinase 2	protein-coding	-0.0980155869687769	-0.220151832815803	-0.224262647514466	0.27806958698958	-0.094170766823903	-0.219222860961358	-0.223357429235034	0.284686267235527	0.0311183153145615	0.989119696665418	1
Merged-chr9-103230904-2	chr9	103230810	103231010	+	1000.0	f0_balb.idr|f1_balb.idr	promoter-TSS (NM_133977)	promoter-TSS (NM_133977)	-624.0	NM_133977	22041.0	Mm.37214	NM_133977	ENSMUSG00000032554	Trf	AI266983|Cd176|HP|Tf|Tfn|hpx	transferrin	protein-coding	3.90147427166734	4.17284958675924	4.04204482355088	3.05211211041653	4.11564041764838	3.86399751447795	3.17179515464924	3.37819600801079	-0.233720309858582	0.656520000446628	0.988505467120973
Merged-chr11-85840818-2	chr11	85840718	85840918	+	943.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_009324, exon 7 of 7)	exon (NM_009324, exon 7 of 7)	8203.0	NM_009324	21385.0	Mm.287052	NM_009324	ENSMUSG00000000093	Tbx2	-	T-box 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-98871505-7	chr15	98871420	98871620	+	943.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033276)	promoter-TSS (NM_001033276)	-315.0	NM_001033276	381022.0	Mm.264889	NM_001033276	ENSMUSG00000048154	Kmt2d	ALR|BC032281|BC058659|C430014K11Rik|KMT2B|Mll2|Mll4	lysine (K)-specific methyltransferase 2D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-99267535-4	chr5	99267419	99267619	+	977.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14592.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	4.95641880834259	4.6080908546879	5.22115877003775	5.18690404786938	4.90007732055092	4.94849374131465	5.37965819562714	4.98141543907975	0.0554165666790278	0.862389558326961	0.998431161219273
Merged-chr10-44342183-4	chr10	44342052	44342252	+	925.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001314013, intron 5 of 6)	intron (NM_001314013, intron 5 of 6)	-17524.0	NR_035450	100316688.0		NR_035450	ENSMUSG00000089260	Mir1929	mir-1929|mmu-mir-1929	microRNA 1929	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-48668825-2	chr13	48668725	48668925	+	686.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5789.0	NM_007526	12022.0	Mm.42241	NM_007526	ENSMUSG00000021381	Barx1	-	BarH-like homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70656557-3	chr11	70656472	70656672	+	851.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001276285)	promoter-TSS (NM_001276285)	-604.0	NM_001136062	13808.0	Mm.251322	NM_007933	ENSMUSG00000060600	Eno3	Eno-3|MSE	enolase 3, beta muscle	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-107212673-2	chr4	107212573	107212773	+	643.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081272, exon 2 of 5)	exon (NM_001081272, exon 2 of 5)	3493.0	NM_001081272	546840.0	Mm.331755	NM_001081272	ENSMUSG00000070877	Ldlrad1	-	low density lipoprotein receptor class A domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-32396301-3	chr3	32396191	32396391	+	973.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30626.0	NM_009517	22401.0	Mm.35705	NM_009517	ENSMUSG00000027663	Zmat3	Wig1	zinc finger matrin type 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70172391-4	chr8	70172277	70172477	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001293797)	promoter-TSS (NM_001293797)	-31.0	NM_145597	234371.0	Mm.23488	NM_145597	ENSMUSG00000002342	Tmem161a	AI428876|BB161850|BC021367	transmembrane protein 161A	protein-coding	3.83489326145146	4.21952485187229	3.95318107226242	3.97422478085052	3.53678140947831	3.79771045168555	4.29031444074907	4.79231352423296	0.267601108644812	0.565935411283656	0.962163739245057
Merged-chr17-26571106-4	chr17	26571016	26571216	+	964.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026170, intron 1 of 9)	intron (NM_026170, intron 1 of 9)	9604.0	NM_026170	67458.0	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-68867338-4	chr11	68867239	68867439	+	998.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14208.0	NM_023668	83431.0	Mm.31979	NM_023668	ENSMUSG00000018736	Ndel1	2600006O07Rik|MITAP1|NUDEL|mNudel	nudE neurodevelopment protein 1 like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-37502680-4	chr19	37502583	37502783	+	681.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	37429.0	NR_131009	78640.0	Mm.234265	NR_131008		1700122C19Rik	-	RIKEN cDNA 1700122C19 gene	ncRNA	1.28775439657008	1.43868951152098	1.09792316300542	1.35264526838989	1.49637007338157	1.44938495358161	1.10404563930044	1.35933043786357	0.263856230029106	0.825026216919146	0.998431161219273
Merged-chr17-10532152-2	chr17	10532052	10532252	+	589.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027032, intron 4 of 4)	intron (NM_027032, intron 4 of 4)	75936.0	NR_077238	319750.0	Mm.383485	NR_077237	ENSMUSG00000089633	A230009B12Rik	-	RIKEN cDNA A230009B12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-25631552-2	chr15	25631452	25631652	+	655.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019472, intron 1 of 40)	intron (NM_019472, intron 1 of 40)	9002.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-87422581-4	chr11	87422474	87422674	+	878.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031386, intron 1 of 30)	intron (NM_031386, intron 1 of 30)	-5017.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-121711674-6	chr5	121711549	121711749	+	995.4815060000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009125)	promoter-TSS (NM_009125)	40.0	NM_009125	20239.0	Mm.260900	NM_009125	ENSMUSG00000042605	Atxn2	9630045M23Rik|ATX2|AW544490|Sca2	ataxin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24471208-2	chr17	24471108	24471308	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025954, intron 1 of 1)	CpG	735.0	NM_025954	67078.0	Mm.28541	NM_025954	ENSMUSG00000043445	Pgp	1700012G19Rik|AI481330|AUM|G3PP	phosphoglycolate phosphatase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-81129040-3	chr13	81128959	81129159	+	679.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 87 of 89)	L1MA6|LINE|L1	164985.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-74990677-4	chr14	74990585	74990785	+	650.200012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15599.0	NR_046078	100043169.0	Mm.145900	NR_046078	ENSMUSG00000115019	Gm4278	-	predicted gene 4278	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91386142-1	chr16	91386042	91386242	+	687.0	f0_balb.idr	intron (NM_001347258, intron 4 of 7)	intron (NM_001347258, intron 4 of 7)	13359.0	NM_001110498	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-145214876-2	chr5	145214776	145214976	+	601.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359191, intron 4 of 5)	B2_Mm2|SINE|B2	10317.0	NM_001359188	22757.0	Mm.332842	NM_016683	ENSMUSG00000055991	Zkscan5	AI132486|AI326970|Zfp95|hKraba1	zinc finger with KRAB and SCAN domains 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-61146278-4	chr1	61146193	61146393	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	168379.0	NM_017480	54167.0	Mm.42044	NM_017480	ENSMUSG00000026009	Icos	AILIM|CCLP|CRP-1|H4|Ly115	inducible T cell co-stimulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-101097838-2	chr9	101097738	101097938	+	544.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001100451, intron 1 of 1)	intron (NM_001100451, intron 1 of 1)	23076.0	NM_001100451	77853.0	Mm.326206	NM_001100451	ENSMUSG00000066415	Msl2	E130103E02Rik|Msl2l1|Rnf184	MSL complex subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-108158351-2	chr14	108158251	108158451	+	636.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	755888.0	NM_199065	76965.0	Mm.257268	NM_199065	ENSMUSG00000075478	Slitrk1	3200001I04Rik	SLIT and NTRK-like family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-25128620-4	chr10	25128505	25128705	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	71565.0	NM_001347460	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-4494982-2	chr8	4494882	4495082	+	722.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026058, intron 1 of 10)	(TTTTC)n|Simple_repeat|Simple_repeat	1577.0	NM_026058	67260.0	Mm.35511	NM_026058	ENSMUSG00000008206	Cers4	2900019C14Rik|Lass4|Trh1	ceramide synthase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-89025722-4	chr11	89025615	89025815	+	987.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26312.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	4.00403626823883	3.72608622020818	4.65972254432517	3.49716025919239	4.25610118238151	3.83973220795354	3.71344902351577	3.4261060463062	-0.278785770072296	0.573607690491191	0.964527909969019
Merged-chr3-8637412-2	chr3	8637312	8637512	+	991.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	9361.0	NR_153352	102635065.0		NR_153352	ENSMUSG00000104102	Gm32496	-	predicted gene, 32496	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-43670766-4	chr19	43670641	43670841	+	994.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145156, intron 1 of 3)	intron (NM_145156, intron 1 of 3)	4140.0	NM_145156	246696.0	Mm.23827	NM_145156	ENSMUSG00000040414	Slc25a28	Mfrn2|Mrs3/4	solute carrier family 25, member 28	protein-coding	4.02417349694039	4.10902238231829	3.7929085743732	3.98361597084858	2.85566055101208	3.72175648314994	2.84930442481022	2.88919793440567	-1.29699004892481	0.0145677793916557	0.142189113770577
Merged-chr19-6276092-4	chr19	6275981	6276181	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010119)	promoter-TSS (NM_010119)	-815.0	NM_010119	13660.0	Mm.30169	NM_010119	ENSMUSG00000024772	Ehd1	AA409636|Past1|RME-1	EH-domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-126990525-4	chr10	126990434	126990634	+	999.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113470, intron 1 of 7)	intron (NM_001113470, intron 1 of 7)	-4996.0	NR_029803	723962.0		NR_029803	ENSMUSG00000065430	Mir26a-2	Mirn26a-2|mir-26a-2	microRNA 26a-2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-105082305-3	chr14	105082216	105082416	+	813.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32360.0	NR_040628	100502987.0	Mm.124957	NR_040628		Gm17066	-	predicted gene 17066	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-60076952-3	chr2	60076854	60077054	+	944.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001182, intron 1 of 35)	intron (NM_001001182, intron 1 of 35)	48786.0	NM_001001182	407823.0	Mm.228071	NM_001001182	ENSMUSG00000026987	Baz2b	5830435C13Rik|BC053917|D2Ertd794e	bromodomain adjacent to zinc finger domain, 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-55116141-4	chr11	55116026	55116226	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18141.0	NM_010299	14667.0	Mm.287807	NM_010299	ENSMUSG00000000594	Gm2a	AA408702|AW215435|GM2-AP|SAP-3	GM2 ganglioside activator protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-13817635-2	chr4	13817535	13817735	+	709.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009822, intron 1 of 10)	Lx8|LINE|L1	32853.0	NM_009822	12395.0	Mm.4909	NM_009822	ENSMUSG00000006586	Runx1t1	Cbfa2t1h|ETO|MTG8	runt-related transcription factor 1; translocated to, 1 (cyclin D-related)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123886126-2	chr5	123886026	123886226	+	683.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-6106.0	NM_175520	243270.0	Mm.33362	NM_175520	ENSMUSG00000049241	Hcar1	Gpr81	hydrocarboxylic acid receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-113668887-4	chr6	113668801	113669001	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172161, intron 3 of 12)	intron (NM_172161, intron 3 of 12)	-28149.0	NM_001347356	381801.0	Mm.333322	NM_001033463	ENSMUSG00000056952	Tatdn2	AI646012|mKIAA0218	TatD DNase domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-103279120-4	chr3	103279044	103279244	+	884.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053170)	promoter-TSS (NM_053170)	-149.0	NM_001079830	94093.0	Mm.195036	NM_053170	ENSMUSG00000033014	Trim33	8030451N04Rik|AI413936|Ecto|Tif1g	tripartite motif-containing 33	protein-coding	2.27355318642039	2.40648322469333	2.32641776625877	2.26174289014711	2.69146807394196	2.91579488352323	3.35311236260352	2.40745652905106	1.18838127313923	0.11006767006189	0.520054570255668
Merged-chr7-84163775-4	chr7	84163667	84163867	+	954.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11874.0	NM_133722	70178.0	Mm.23914	NM_133722	ENSMUSG00000038459	Abhd17c	2210412D01Rik|AL023007|Fam108c|Fam108c1	abhydrolase domain containing 17C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97287476-2	chr6	97287376	97287576	+	934.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001346637, exon 23 of 23)	3' UTR (NM_001346637, exon 23 of 23)	-34696.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-45221760-4	chr9	45221668	45221868	+	955.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198971, intron 1 of 4)	intron (NM_001198971, intron 1 of 4)	-17693.0	NM_145403	214523.0	Mm.436756	NM_145403	ENSMUSG00000032091	Tmprss4	mCAP2	transmembrane protease, serine 4	protein-coding	3.63558505903627	3.84877152382146	3.02972922354801	3.45834085254804	3.99267055685945	3.41231880186983	4.48219721005379	4.1290784283876	0.769963636852224	0.125842186123811	0.555810952405876
Merged-chr2-145858625-1	chr2	145858525	145858725	+	558.0	f0_balb.idr	intron (NM_028724, intron 8 of 12)	intron (NM_028724, intron 8 of 12)	-44616.0	NM_026425	67877.0	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-108840278-1	chr3	108840178	108840378	+	1000.0	f0_c57.idr	intron (NM_011504, intron 1 of 18)	CpG	224.0	NM_011504	20912.0	Mm.316894	NM_011504	ENSMUSG00000027882	Stxbp3	Munc-18c|Stxbp3a|Sxtbp3|Unc18-3	syntaxin binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-29496508-4	chr17	29496317	29496517	+	905.6416630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008842)	TTS (NM_008842)	5372.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-159557710-4	chr2	159557619	159557819	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-389622.0	NR_040498	71081.0	Mm.383491	NR_040498	ENSMUSG00000085198	4933416E03Rik	-	RIKEN cDNA 4933416E03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-22302547-4	chr10	22302462	22302662	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009018, intron 6 of 6)	intron (NM_009018, intron 6 of 6)	-4158.0	NR_015465	606736.0	Mm.387042	NR_015465	ENSMUSG00000097352	C920009B18Rik	-	RIKEN cDNA C920009B18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-66108309-6	chr7	66108304	66108504	+	807.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-1111.0	NM_001081163	269941.0	Mm.333916	NM_001081163	ENSMUSG00000032640	Chsy1	mKIAA0990	chondroitin sulfate synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-57650003-1	chr9	57649903	57650103	+	831.0	f1_c57bl6.idr	intron (NM_001304761, intron 2 of 14)	B2_Mm2|SINE|B2	3628.0	NM_001304761	12988.0	Mm.21974	NM_007783	ENSMUSG00000032312	Csk	AW212630|p50CSK	c-src tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-9891853-1	chr1	9891753	9891953	+	875.5	f1_c57bl6.idr	intron (NM_133220, intron 17 of 17)	(TG)n|Simple_repeat|Simple_repeat	-16785.0	NM_177722	240697.0	Mm.259800	NM_177722	ENSMUSG00000046101	Mcmdc2	6030422M02Rik	minichromosome maintenance domain containing 2	protein-coding	2.09334280261975	1.22971450903324	2.67551193668656	2.09601785223523	1.72627856193453	2.11564601608414	1.20322584079872	3.11893216245746	0.304207302713131	0.774211506159591	0.998431161219273
Merged-chr11-103006547-2	chr11	103006447	103006647	+	795.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_026551, intron 1 of 4)	intron (NM_026551, intron 1 of 4)	-6626.0	NR_105896	102466988.0		NR_105896	ENSMUSG00000098613	Mir6931	Gm27303|mmu-mir-6931	microRNA 6931	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-74994034-4	chr8	74993943	74994143	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178017, intron 1 of 10)	CpG	393.0	NM_178017	70823.0	Mm.261739	NM_178017	ENSMUSG00000034518	Hmgxb4	4733401K04Rik|AI316803|Hmgb2l1	HMG box domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-107837797-4	chr13	107837700	107837900	+	978.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 2 of 14)	intron (NM_145456, intron 2 of 14)	52264.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	2.87827467595073	2.00035795649945	3.52217977851532	2.83265948747635	2.90259053947843	3.59296010694139	3.47842239132744	3.14064446169546	0.641987253740713	0.333622280971276	0.833601405219443
Merged-chr16-91542020-2	chr16	91541920	91542120	+	829.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5074.0	NM_008338	15980.0	Mm.249364	NM_008338	ENSMUSG00000022965	Ifngr2	Ifgr2|Ifgt	interferon gamma receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-32474479-2	chr9	32474379	32474579	+	553.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008026, intron 2 of 8)	L2|LINE|L2	66973.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-90969507-2	chr10	90969407	90969607	+	830.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001177397, exon 12 of 12)	3' UTR (NM_001177397, exon 12 of 12)	113236.0	NM_001042558	11783.0	Mm.220289	NM_009684	ENSMUSG00000019979	Apaf1	6230400I06Rik|Apaf-1|Apaf1l|fog|mKIAA0413	apoptotic peptidase activating factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-108660312-1	chr5	108660212	108660412	+	567.0	f0_c57.idr	promoter-TSS (NM_172997)	promoter-TSS (NM_172997)	-19.0	NM_008325	15932.0	Mm.358608	NM_008325	ENSMUSG00000033540	Idua	6030426D08	iduronidase, alpha-L-	protein-coding	0.532392500498893	0.807837895855403	0.559686137795005	1.06874671172803	0.534979579917734	1.00906935993099	1.82121417832095	1.2035519887654	2.09195407452126	0.184287581742294	0.659825155101641
Merged-chr3-51494721-1	chr3	51494621	51494821	+	669.0	f0_balb.idr	3' UTR (NM_016858, exon 2 of 2)	3' UTR (NM_016858, exon 2 of 2)	10755.0	NM_016858	19338.0	Mm.1664	NM_016858	ENSMUSG00000027739	Rab33b	-	RAB33B, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-46987111-3	chr7	46986993	46987193	+	918.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033461, intron 4 of 4)	intron (NR_033461, intron 4 of 4)	10461.0	NR_033461	629141.0	Mm.229259	NR_033461	ENSMUSG00000056509	Gm9999	-	predicted gene 9999	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-122317662-3	chr7	122317565	122317765	+	856.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316672, intron 2 of 16)	ORR1E|LTR|ERVL-MaLR	28540.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-16894079-4	chr12	16893976	16894176	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009072)	promoter-TSS (NM_009072)	-902.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	4.77097949758446	5.05440700564061	5.05687607997342	5.58381699960937	5.16766433309488	4.70327954069176	4.60775899216155	5.62937978027352	-0.0597602563966348	0.863676403233623	0.998431161219273
Merged-chr14-13997979-3	chr14	13997867	13998067	+	722.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB5|LINE|L1	-14524.0	NM_139227	246103.0	Mm.133625	NM_139227	ENSMUSG00000021738	Atxn7	A430107N12Rik|AI627028|Sca7|ataxin-7	ataxin 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32217079-2	chr2	32216979	32217179	+	545.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172661, intron 17 of 29)	intron (NM_172661, intron 17 of 29)	-19604.0	NM_145145	99011.0	Mm.31192	NM_145145	ENSMUSG00000039254	Pomt1	AI505244	protein-O-mannosyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-150895998-2	chr5	150895898	150896098	+	971.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-56609.0	NM_013823	16591.0	Mm.6500	NM_013823	ENSMUSG00000058488	Kl	alpha-kl	klotho	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41982123-4	chr19	41982043	41982243	+	942.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145500, intron 1 of 2)	CpG	380.0	NM_145500	226122.0	Mm.22948	NM_145500	ENSMUSG00000025171	Ubtd1	BC016129	ubiquitin domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-43675372-1	chr17	43675272	43675472	+	561.0	f0_balb.idr	intron (NM_001285947, intron 1 of 10)	intron (NM_001285947, intron 1 of 10)	8000.0	NM_018887	56050.0	Mm.17991	NM_018887	ENSMUSG00000023963	Cyp39a1	mCYP39A1	cytochrome P450, family 39, subfamily a, polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-17158311-2	chr11	17158211	17158411	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024459)	promoter-TSS (NM_024459)	-987.0	NM_024459	19058.0	Mm.41840	NM_024459	ENSMUSG00000033953	Ppp3r1	CaNB1|Cnb1|MCIP1	protein phosphatase 3, regulatory subunit B, alpha isoform (calcineurin B, type I)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171503500-4	chr1	171503403	171503603	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019484)	promoter-TSS (NM_019484)	25.0	NM_019484	56009.0	Mm.389208	NM_019484	ENSMUSG00000060244	Alyref2	C130042O11Rik|REF2|Refbp2	Aly/REF export factor 2	protein-coding	6.71766482987463	6.25301997085286	6.28861539069934	7.10906933045379	6.81356651013086	5.56750969238105	6.49061993142325	6.3059371701262	-0.288918333868841	0.278011406832266	0.781776763868796
Merged-chr2-92059128-2	chr2	92059028	92059228	+	711.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-34958.0	NM_011957	26427.0	Mm.10353	NM_011957	ENSMUSG00000027230	Creb3l1	Oasis	cAMP responsive element binding protein 3-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88620885-8	chr3	88620770	88620970	+	856.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008487)	promoter-TSS (NM_008487)	-236.0	NM_008487	16800.0	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	0.612944063907913	1.29789387952682	0.648601363262814	1.33302224707114	0.616355749973983	1.31019379940589	2.13421598671579	0.863480031556609	1.26959339051308	0.393281933525973	0.881980680083106
Merged-chr16-23379084-2	chr16	23378984	23379184	+	666.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	-50049.0	NM_001004151	239766.0	Mm.208751	NM_001004151	ENSMUSG00000033383	Rtp1	Gm1766|Gm604	receptor transporter protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166412636-4	chr2	166412536	166412736	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34815.0	NR_015558	319684.0	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102458108-1	chr12	102458008	102458208	+	929.0	f1_c57bl6.idr	Intergenic	Intergenic	-11026.0	NM_001199004	27277.0	Mm.273370	NM_013747	ENSMUSG00000021192	Golga5	Ret-II	golgi autoantigen, golgin subfamily a, 5	protein-coding	1.39510960209936	1.8150268731288	1.83824398912674	0.844578684816889	1.29139140609066	1.45904190050562	0.859602101296201	1.04763124186764	-1.3160064915549	0.318589464185327	0.821951596143819
Merged-chr6-100102401-2	chr6	100102301	100102501	+	586.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	184957.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-104252677-3	chr9	104252566	104252766	+	745.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359740, intron 1 of 56)	Tigger7|DNA|TcMar-Tigger	10264.0	NM_001359740	235567.0	Mm.217256	NM_001163026	ENSMUSG00000032560	Dnajc13	D030002L11Rik|Gm1124|RME-8|Rme8|mKIAA0678	DnaJ heat shock protein family (Hsp40) member C13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118148776-9	chr11	118148742	118148942	+	966.0793460000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19623.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-177491201-4	chr1	177491087	177491287	+	998.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45366.0	NM_013915	30928.0	Mm.330700	NM_013915	ENSMUSG00000063659	Zbtb18	RP58|Zfp238|Znf238.|zfp-238	zinc finger and BTB domain containing 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-32632875-2	chr14	32632775	32632975	+	581.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001796, intron 5 of 6)	intron (NM_001001796, intron 5 of 6)	32948.0	NM_001001796	107751.0	Mm.119274	NM_001001796	ENSMUSG00000041730	Prrxl1	Drg11|Drgx	paired related homeobox protein-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96274226-2	chr3	96274126	96274326	+	599.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4526.0	NM_175666	319189.0	Mm.297655	NM_175666	ENSMUSG00000105827	Hist2h2bb	H2b-616	histone cluster 2, H2bb	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19067291-2	chr7	19067191	19067391	+	849.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_031255, intron 4 of 5)	intron (NM_031255, intron 4 of 5)	-8909.0	NM_010058	13401.0	Mm.2852	NM_010058	ENSMUSG00000030410	Dmwd	DMR-N9|Dm9	dystrophia myotonica-containing WD repeat motif	protein-coding	0.726002031025294	0.416173666730101	0.403463950687687	1.68764215820598	0.57307576041858	0.418998676413881	0.406292678272543	1.47675885506142	-0.487226534817253	0.778485609701314	0.998431161219273
Merged-chr7-80833925-1	chr7	80833825	80834025	+	721.0	f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-28183.0	NM_009553	22691.0	Mm.358645	NM_009553	ENSMUSG00000038797	Zscan2	Zfp-29|Zfp29	zinc finger and SCAN domain containing 2	protein-coding	2.80711936098875	3.97172023404493	1.49678294399853	3.51456193310043	2.92427309450989	2.97487124844936	1.51069171803766	3.85943056914004	-0.276318832502725	0.844463779203149	0.998431161219273
Merged-chr16-20549036-2	chr16	20548936	20549136	+	971.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_030670)	promoter-TSS (NR_030670)	433.0	NM_013852	27406.0	Mm.27135	NM_013852	ENSMUSG00000003234	Abcf3	AI326318|AU016058|BB119416	ATP-binding cassette, sub-family F (GCN20), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-34726479-1	chr19	34726379	34726579	+	593.0	f0_balb.idr	intron (NM_172838, intron 1 of 6)	L1MB3|LINE|L1	20632.0	NM_172838	240638.0	Mm.74636	NM_172838	ENSMUSG00000009378	Slc16a12	3230401A21|AW210596	solute carrier family 16 (monocarboxylic acid transporters), member 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-83536755-4	chr9	83536630	83536830	+	847.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-11608.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-143629900-3	chr5	143629793	143629993	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011182, intron 1 of 12)	intron (NM_011182, intron 1 of 12)	7446.0	NM_011182	19159.0	Mm.281003	NM_011182	ENSMUSG00000018001	Cyth3	AI648983|ARNO3|CLM3|Grp1|Pscd3	cytohesin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71948869-3	chr8	71948804	71949004	+	656.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2162.0	NM_001164581	234413.0	Mm.334607	NM_001164581	ENSMUSG00000052446	Zfp961	A230105L22Rik|BC065788|mszf37|mszf55-2	zinc finger protein 961	protein-coding	1.27859608652223	1.06961438782796	0.546012404721279	1.19947708586182	0.934454463739986	0.763272082033819	0.547992480791051	0.540282049260738	-1.88825324423344	0.249612929128392	1
Merged-chr2-93647232-2	chr2	93647132	93647332	+	965.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007442, intron 1 of 3)	CpG	4798.0	NM_007442	11695.0	Mm.389389	NM_007442	ENSMUSG00000040310	Alx4	lst	aristaless-like homeobox 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131279859-2	chr1	131279759	131279959	+	563.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019777)	promoter-TSS (NM_019777)	-296.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-66897379-3	chr6	66897283	66897483	+	766.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177558, intron 1 of 4)	intron (NM_001177558, intron 1 of 4)	492.0	NM_001177558	14701.0	Mm.234342	NM_025278	ENSMUSG00000036402	Gng12	2010305F15Rik|AA536815|AI115529|AI314170|AI842738	guanine nucleotide binding protein (G protein), gamma 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-60479112-2	chr13	60479012	60479212	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-122835.0	NM_001285917	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-128741204-2	chr7	128741104	128741304	+	860.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145955)	promoter-TSS (NM_145955)	-775.0	NM_145955	210711.0	Mm.58882	NM_145955	ENSMUSG00000048170	Mcmbp	1110007A13Rik|AU017382|BC025641|MCM-BP	minichromosome maintenance complex binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-46830164-2	chr7	46830064	46830264	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-15640.0	NM_010699	16828.0	Mm.29324	NM_010699	ENSMUSG00000063229	Ldha	Ldh1|Ldhm|l7R2	lactate dehydrogenase A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-95045404-3	chr4	95045314	95045514	+	711.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6808.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-78939194-4	chr17	78939094	78939294	+	950.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028611, intron 3 of 9)	intron (NM_028611, intron 3 of 9)	2059.0	NM_028611	73694.0	Mm.104959	NM_028611	ENSMUSG00000024082	Ndufaf7	2410091C18Rik|AL033374|PRO1853	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex assembly factor 7	protein-coding	5.54514774401038	5.54650962421508	5.3620013638323	5.4178520131727	3.55104674899815	4.85661444607574	4.44441070994976	3.35602745480725	-1.57121380869391	3.87679359282912e-05	0.00141236142287744
Merged-chr2-101767381-4	chr2	101767267	101767467	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355625, intron 3 of 8)	intron (NM_001355625, intron 3 of 8)	30340.0	NM_175181	72446.0	Mm.24138	NM_175181	ENSMUSG00000032841	Prr5l	2600010E01Rik|4833411O04Rik|Protor-2|Protor2	proline rich 5 like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80094308-2	chr7	80094208	80094408	+	772.25	f1_balb.idr|f1_c57bl6.idr	TTS (NM_173011)	TTS (NM_173011)	-19051.0	NR_045695	100859962.0	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-122013807-4	chr14	122013703	122013903	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026861, intron 8 of 8)	intron (NM_026861, intron 8 of 8)	-20871.0	NM_001037744	223262.0	Mm.297637	NM_001037744	ENSMUSG00000071229	Timm8a2	-	translocase of inner mitochondrial membrane 8A2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97400518-4	chr11	97400413	97400613	+	966.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37962.0	NM_138657	192157.0	Mm.34339	NM_138657	ENSMUSG00000038485	Socs7	2310063P06Rik|C85125|Nap4	suppressor of cytokine signaling 7	protein-coding	-0.437187196472877	-0.424011935261604	0.258290111896285	0.115597846292857	-0.436363385950299	-0.423040780977644	-0.427371913548609	-0.431070991830626	-3.60582640987193	0.172138006526187	1
Merged-chr5-16047535-4	chr5	16047417	16047617	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110843, intron 3 of 38)	intron (NM_001110843, intron 3 of 38)	112826.0	NM_001110844	12293.0	Mm.159842	NM_009784	ENSMUSG00000040118	Cacna2d1	Ca(v)alpha2delta1|Cacna2|Cchl2a	calcium channel, voltage-dependent, alpha2/delta subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-69204785-4	chr17	69204668	69204868	+	899.93335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355736, intron 1 of 21)	Lx8b|LINE|L1	45412.0	NM_001355735	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131549207-3	chr1	131549101	131549301	+	941.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21298.0	NM_175382	108900.0	Mm.31278	NM_175382	ENSMUSG00000055184	Fam72a	2700049P18Rik|P17	family with sequence similarity 72, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-46062941-4	chr13	46062846	46063046	+	884.854126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-97955.0	NM_009124	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-59483475-2	chr11	59483375	59483575	+	715.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11001.0	NM_178417	237775.0	Mm.339604	NM_178417	ENSMUSG00000054519	Zfp867	-	zinc finger protein 867	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-8952010-2	chr19	8951910	8952110	+	568.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011842, exon 18 of 18)	3' UTR (NM_011842, exon 18 of 18)	-1822.0	NM_197993	70044.0	Mm.165979	NM_197993	ENSMUSG00000071645	Tut1	2700038E08Rik|PAPD2|Rbm21|TUTase6|U6-TUTase|star-PAP	terminal uridylyl transferase 1, U6 snRNA-specific	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-42370147-2	chr6	42370047	42370247	+	717.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045169)	promoter-TSS (NR_045169)	-524.0	NR_045169	72131.0	Mm.105385	NR_045169	ENSMUSG00000101268	2010310C07Rik	-	RIKEN cDNA 2010310C07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-94628148-1	chr16	94628048	94628248	+	547.0	f1_c57bl6.idr	intron (NM_001113389, intron 2 of 11)	intron (NM_001113389, intron 2 of 11)	16729.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-128839331-4	chr4	128839238	128839438	+	848.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-33226.0	NM_001081098	230761.0	Mm.22616	NM_001081098	ENSMUSG00000028799	Zfp362	-	zinc finger protein 362	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41777012-3	chr19	41776907	41777107	+	899.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027667, intron 9 of 11)	L1MB2|LINE|L1	25077.0	NM_001163495	71085.0	Mm.21646	NM_027667	ENSMUSG00000025154	Arhgap19	4933411B03Rik|AI120128|AW546831|mFLJ00368	Rho GTPase activating protein 19	protein-coding	2.38411883484397	0.940270450273262	0.91586786886816	2.25788932726625	0.867627003994221	0.94564170900997	1.97640258902409	2.00944323919201	-0.634144714996744	0.782567021667113	0.998431161219273
Merged-chr4-95206861-3	chr4	95206774	95206974	+	704.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-154652.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-8462007-4	chr8	8461920	8462120	+	975.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	198753.0	NM_010111	13642.0	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-45104025-2	chr2	45103925	45104125	+	918.666626	f1_balb.idr|f1_c57bl6.idr	intron (NR_149354, intron 2 of 2)	(GA)n|Simple_repeat|Simple_repeat	6252.0	NM_001289521	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-79089365-1	chr18	79089265	79089465	+	661.0	f1_c57bl6.idr	intron (NM_053099, intron 1 of 5)	L1_Mus4|LINE|L1	20026.0	NM_053099	240427.0	Mm.312871	NM_053099	ENSMUSG00000024548	Setbp1	C130092E12|Seb|mKIAA0437	SET binding protein 1	protein-coding	-2.05752322593321	-2.15521190974092	-2.16307242109104	-2.16952927915413	-2.17938029103484	-2.15350850414045	-2.16129297361887	-2.16837350464794	-0.683654500252594	0.846597994014493	1
Merged-chr13-4355287-2	chr13	4355190	4355390	+	980.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR1B-int|LTR|ERV1	-75891.0	NM_013777	622402.0	Mm.27447	NM_013777	ENSMUSG00000021211	Akr1c12	AI266976|Akra	aldo-keto reductase family 1, member C12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-52159272-2	chr6	52159172	52159372	+	547.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311118)	promoter-TSS (NM_001311118)	748.0	NR_131181	105242658.0	Mm.372521	NR_131181	ENSMUSG00000087658	Hotairm1	Gm15051|Hoxaas1	Hoxa transcript antisense RNA, myeloid-specific 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-145309071-4	chr7	145308949	145309149	+	812.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_145379, exon 3 of 3)	3' UTR (NM_145379, exon 3 of 3)	-5786.0	NM_203490	211578.0	Mm.370299	NM_203490	ENSMUSG00000051207	Mrgprd	Gm499|Mgrd|MrgD|TGR7	MAS-related GPR, member D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-17984628-2	chr3	17984528	17984728	+	566.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3_Mus|LINE|L1	36184.0	NM_029289	75439.0	Mm.27023	NM_029289	ENSMUSG00000027564	Cypt12	1700001F04Rik|AV209098	cysteine-rich perinuclear theca 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-144358114-5	chr5	144358048	144358248	+	760.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025833)	promoter-TSS (NM_025833)	-36.0	NM_025833	66898.0	Mm.18814	NM_025833	ENSMUSG00000038859	Baiap2l1	1300006M19Rik|AI585895|IRTKS	BAI1-associated protein 2-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-86836043-3	chr12	86835903	86836103	+	831.233337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	AT_rich|Low_complexity|Low_complexity	48811.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-118106779-2	chr7	118106679	118106879	+	877.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_170669, exon 5 of 5)	3' UTR (NM_170669, exon 5 of 5)	9368.0	NM_170669	267019.0	Mm.288212	NM_170669	ENSMUSG00000008683	Rps15a	A630031B11Rik	ribosomal protein S15A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67700971-4	chr10	67700856	67701056	+	984.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-128997.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88337528-3	chr3	88337473	88337673	+	914.6555789999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178246, intron 1 of 21)	intron (NM_178246, intron 1 of 21)	1313.0	NM_178246	229512.0	Mm.439830	NM_173188	ENSMUSG00000001415	Smg5	BC024683|mKIAA1089	Smg-5 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	-1.3681463318974	-1.33624156493372	-1.34650167276047	-0.80669348975676	-1.36769697821496	-1.33401815676661	-1.34417900924365	-1.3534210303531	-2.3580830592467	0.49586638340111	1
Merged-chr2-21117344-3	chr2	21117240	21117440	+	656.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	88025.0	NM_027728	71233.0	Mm.27658	NM_027728	ENSMUSG00000026679	Enkur	4933434I06Rik|AU016229	enkurin, TRPC channel interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127256789-2	chr7	127256689	127256889	+	786.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_023203)	TTS (NM_023203)	3878.0	NM_023203	66422.0	Mm.29898	NM_023203	ENSMUSG00000042462	Dctpp1	2410015N17Rik|AI854235|RS21-C6	dCTP pyrophosphatase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-60779514-2	chr18	60779403	60779603	+	579.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_020600)	TTS (NM_020600)	4907.0	NM_020600	20044.0	Mm.43778	NM_020600	ENSMUSG00000024608	Rps14	2600014J02Rik|AL023078	ribosomal protein S14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-38063004-2	chr5	38062904	38063104	+	626.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359398, intron 1 of 9)	intron (NM_001359398, intron 1 of 9)	23774.0	NM_026959	71116.0	Mm.18959	NM_026959	ENSMUSG00000029125	Stx18	1810035L21Rik|4933425D03Rik|AU041562	syntaxin 18	protein-coding	-1.17367364971587	-1.14665061133654	-1.15856004380685	-1.16834280623128	-1.17310571790619	-1.14406978763884	-0.42938571406771	-1.16659169643457	2.89727187181404	0.396361616615464	1
Merged-chr19-5910370-2	chr19	5910270	5910470	+	798.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_011262, intron 1 of 10)	intron (NM_011262, intron 1 of 10)	2501.0	NM_011262	19708.0	Mm.2651	NM_011262	ENSMUSG00000024826	Dpf2	2210010M07Rik|BAF45D|Req|ubi-d4	D4, zinc and double PHD fingers family 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150901755-2	chr4	150901629	150901829	+	815.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_020569, intron 5 of 6)	B1_Mus2|SINE|Alu	8192.0	NM_020569	57320.0	Mm.277349	NM_020569	ENSMUSG00000028964	Park7	DJ-1|Dj1	Parkinson disease (autosomal recessive, early onset) 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-110084011-2	chr7	110083911	110084111	+	555.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009281, intron 11 of 15)	intron (NM_009281, intron 11 of 15)	22309.0	NM_009281	20841.0	Mm.10815	NM_009281	ENSMUSG00000061079	Zfp143	AA959806|AU015869|D7Ertd805e|KRAB14|SBF|Staf|Zfp79|Zfp80-rs1|Znf143|pHZ-1	zinc finger protein 143	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-21977317-2	chr6	21977217	21977417	+	598.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8593.0	NM_001081351	214642.0	Mm.221404	NM_001081351	ENSMUSG00000062980	Cped1	6720481P07|A430107O13Rik|AI552584	cadherin-like and PC-esterase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-11940254-2	chr18	11940154	11940354	+	750.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_022021, intron 7 of 8)	B1F2|SINE|Alu	-99816.0	NR_035447	100316686.0		NR_035447	ENSMUSG00000084565	Mir1901	Mirn1901|mmu-mir-1901	microRNA 1901	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-35811704-2	chr1	35811604	35811804	+	800.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	-256696.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-5234154-1	chr16	5234054	5234254	+	1000.0	f0_balb.idr	intron (NM_145362, intron 1 of 12)	intron (NM_145362, intron 1 of 12)	533.0	NM_145362	208211.0	Mm.34581	NM_145362	ENSMUSG00000039427	Alg1	HMAT1|HMT1	asparagine-linked glycosylation 1 (beta-1,4-mannosyltransferase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-119050493-4	chr10	119050387	119050587	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_152787)	promoter-TSS (NR_152787)	12.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71126967-2	chr17	71126867	71127067	+	773.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_010867)	TTS (NM_010867)	-56565.0	NM_001357791	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-27209892-4	chr3	27209808	27210008	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 1 of 4)	intron (NM_178772, intron 1 of 4)	26904.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-134374728-3	chr5	134374623	134374823	+	961.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081462, intron 22 of 29)	intron (NM_001081462, intron 22 of 29)	48269.0	NR_039544	100628570.0		NR_039544	ENSMUSG00000093311	Mir3965	mmu-mir-3965|mu-mir-3965	microRNA 3965	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100465678-6	chr7	100465571	100465771	+	926.7037349999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001017985, intron 32 of 32)	intron (NM_001017985, intron 32 of 32)	-7320.0	NM_009464	22229.0	Mm.6254	NM_009464	ENSMUSG00000032942	Ucp3	AI645527|Slc25a9|UCP-3	uncoupling protein 3 (mitochondrial, proton carrier)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-49301771-2	chr13	49301671	49301871	+	769.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_015759, intron 1 of 17)	intron (NM_015759, intron 1 of 17)	7437.0	NM_015759	30938.0	Mm.291089	NM_015759	ENSMUSG00000037946	Fgd3	5830461L01Rik|ZFYVE5	FYVE, RhoGEF and PH domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-5749349-4	chr5	5749236	5749436	+	984.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027399)	promoter-TSS (NM_027399)	-19.0	NM_027399	70358.0	Mm.85429	NM_027399	ENSMUSG00000015652	Steap1	2410007B19Rik|Prss24|Steap	six transmembrane epithelial antigen of the prostate 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-148819163-2	chr4	148819117	148819317	+	907.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_027195, intron 1 of 15)	intron (NM_027195, intron 1 of 15)	14825.0	NM_027195	69743.0	Mm.233879	NM_027195	ENSMUSG00000028977	Casz1	2410019P08Rik|AV096627|BC040081|Cst|D4Ertd432e	castor zinc finger 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124747901-2	chr6	124747801	124748001	+	905.666626	f1_balb.idr|f1_c57bl6.idr	exon (NM_007881, exon 5 of 10)	exon (NM_007881, exon 5 of 10)	-6822.0	NM_013535	14790.0	Mm.439877	NM_013535	ENSMUSG00000072772	Grcc10	2310033H05Rik|C10	gene rich cluster, C10 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-81863371-4	chr7	81863251	81863451	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291282, intron 2 of 9)	intron (NM_001291282, intron 2 of 9)	664.0	NM_001291282	107769.0	Mm.221412	NM_145375	ENSMUSG00000038623	Tm6sf1	AI428514|BC023123|C630016D09Rik	transmembrane 6 superfamily member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-116990235-2	chr8	116990135	116990335	+	554.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_026572, intron 1 of 4)	intron (NM_026572, intron 1 of 4)	3214.0	NM_026572	68133.0	Mm.258462	NM_026572	ENSMUSG00000034424	Gcsh	1100001L02Rik|5730591C18Rik	glycine cleavage system protein H (aminomethyl carrier)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-25888661-2	chr1	25888561	25888761	+	554.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4B|LINE|L1	-58954.0	NM_175642	210933.0	Mm.336569	NM_175642	ENSMUSG00000033569	Adgrb3	A830096D10Rik|Bai3	adhesion G protein-coupled receptor B3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-66877575-4	chr9	66877473	66877673	+	922.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	42132.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132630092-2	chr4	132629995	132630195	+	731.083374	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-8951.0	NM_210071	14050.0	Mm.227733	NM_010166	ENSMUSG00000028886	Eya3	AI844637	EYA transcriptional coactivator and phosphatase 3	protein-coding	0.547738067813568	0.416821597557049	0.600972468848525	0.401229072030327	0.915505689371346	1.2008032748891	1.14098195098816	0.402423949853343	2.93281535590647	0.0974772982911485	1
Merged-chr2-25273181-2	chr2	25273081	25273281	+	625.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023464)	promoter-TSS (NM_023464)	715.0	NM_175300	99152.0	Mm.291624	NM_175300	ENSMUSG00000026965	Anapc2	9230107K09Rik|AL024279|Apc2|Emi4|Imi4|mKIAA1406	anaphase promoting complex subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-138919744-4	chr7	138919646	138919846	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10240.0	NM_009760	12176.0	Mm.378890	NM_009760	ENSMUSG00000078566	Bnip3	Nip3	BCL2/adenovirus E1B interacting protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-35549274-3	chr8	35549169	35549369	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-38529.0	NM_001081279	52065.0	Mm.103246	NM_001081279	ENSMUSG00000070056	Mfhas1	2310066G09Rik|D8Ertd91e	malignant fibrous histiocytoma amplified sequence 1	protein-coding	2.11764768678892	1.41832693895661	1.34983733503896	1.29305543521144	3.84000190145084	4.03127503485288	3.84326005463482	4.40969649485337	4.72730392357906	1.22297408641954e-07	1.03820116194776e-05
Merged-chr9-95448749-2	chr9	95448649	95448849	+	666.416687	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC5|LINE|L1	-41479.0	NM_018763	54371.0	Mm.212446	NM_018763	ENSMUSG00000033350	Chst2	AI428561|AW121776|C130041E03Rik|Chts2|GST-2|GlcNAc6ST|Gn6st	carbohydrate sulfotransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-9846974-4	chr13	9846870	9847070	+	850.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-81649.0	NM_144516	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-32286981-4	chr11	32286844	32287044	+	706.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033981)	promoter-TSS (NM_001033981)	-20.0	NM_001033981	544763.0	Mm.450958	NM_001033981	ENSMUSG00000073063	Hbq1b	F830116E18Rik|Hbqt1	hemoglobin, theta 1B	protein-coding	-1.8418762459921	-1.8125357239735	-1.82140854000656	-1.82869693527674	-1.56059678980999	-1.8106129477253	-1.81939992894326	-1.82739231600805	1.3620893379502	0.699511506488145	1
Merged-chr5-118069620-2	chr5	118069520	118069720	+	875.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172721, intron 9 of 10)	intron (NM_172721, intron 9 of 10)	41877.0	NM_021344	57816.0	Mm.273285	NM_021344	ENSMUSG00000029359	Tesc	1010001A17Rik|2410011K10Rik|TE-1	tescalcin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-55226552-2	chr1	55226452	55226652	+	896.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_028713, exon 1 of 9)	5' UTR (NM_028713, exon 1 of 9)	230.0	NM_001356288	74013.0	Mm.292050	NM_028713	ENSMUSG00000025978	Rftn2	2700010E02Rik|3222401M22Rik	raftlin family member 2	protein-coding	-0.906278453279413	-0.407431447964563	-1.048208294768	-1.05352992943534	-1.05671119907732	-1.03350740516421	-1.04547307017549	-1.05313686373073	-2.88793990269837	0.350705703949045	1
Merged-chr3-101377158-3	chr3	101377109	101377309	+	950.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207205)	promoter-TSS (NM_207205)	84.0	NM_207205	78908.0	Mm.257997	NM_207205	ENSMUSG00000042035	Igsf3	1700016K10Rik|2810035F16Rik|4833439O17Rik|mKIAA0466	immunoglobulin superfamily, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-80667646-2	chr2	80667553	80667753	+	613.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR50|LTR|ERVL	28389.0	NM_001190179	69482.0	Mm.29200	NM_027091	ENSMUSG00000026999	Nup35	2310006I24Rik|35kDa|5330402E05Rik|MP44|NO44	nucleoporin 35	protein-coding	0.909398635426259	0.507125099771035	0.49650054710052	1.09589271385208	0.648258809197469	0.509499956149892	0.878883807655563	1.62375814746487	1.01099371587185	0.532872399610562	0.952082138848632
Merged-chr5-121596346-4	chr5	121596241	121596441	+	995.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2517.0	NM_001308450	11669.0	Mm.284446	NM_009656	ENSMUSG00000029455	Aldh2	AHD-M1|ALDH-E2|ALDHI|Ahd-5|Ahd5	aldehyde dehydrogenase 2, mitochondrial	protein-coding	3.10838209479996	2.28815076171423	2.72380031958192	3.35647245003375	3.53816437410347	2.98445630847163	4.083383440049	3.58532033229089	1.07860005373717	0.0802682916681628	0.431478030212642
Merged-chr17-63374386-4	chr17	63374298	63374498	+	953.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015794, intron 5 of 8)	MTA_Mm|LTR|ERVL-MaLR	-61425.0	NR_130176	414079.0	Mm.444282	NR_130176	ENSMUSG00000090565	4930405O22Rik	-	RIKEN cDNA 4930405O22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-111056796-1	chr8	111056696	111056896	+	1000.0	f1_balb.idr	exon (NM_028274, exon 1 of 1)	exon (NM_028274, exon 1 of 1)	457.0	NM_028274	72544.0	Mm.24174	NM_028274	ENSMUSG00000109941	Exosc6	2610510N21Rik|C76919|Mtr3	exosome component 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-42374844-2	chr6	42374744	42374944	+	550.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045169, intron 2 of 3)	intron (NR_045169, intron 2 of 3)	-1576.0	NM_023580	13835.0	Mm.133330	NM_023580	ENSMUSG00000029859	Epha1	5730453L17Rik|AL033318|Eph|Esk	Eph receptor A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-68793747-4	chr2	68793656	68793856	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-67685.0	NM_172856	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-40423923-3	chr6	40423821	40424021	+	897.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356375, intron 1 of 8)	intron (NM_001356375, intron 1 of 8)	12214.0	NM_001356375	243780.0	Mm.333006	NM_175528	ENSMUSG00000037172	E330009J07Rik	AI841796|Lchn|mKIAA1147	RIKEN cDNA E330009J07 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-108132715-4	chr3	108132591	108132791	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010306, intron 1 of 8)	intron (NM_010306, intron 1 of 8)	13461.0	NM_010306	14679.0	Mm.271703	NM_010306	ENSMUSG00000000001	Gnai3	AI158965|AW537698|Galphai3|Gnai-3	guanine nucleotide binding protein (G protein), alpha inhibiting 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43460202-1	chr4	43460102	43460302	+	592.0	f0_c57.idr	Intergenic	RMER4B|LTR|ERVK	-5576.0	NM_007654	12517.0	Mm.188157	NM_007654	ENSMUSG00000028459	Cd72	CD72c|Ly-19|Ly-32|Ly-m19|Lyb-2	CD72 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-164053498-2	chr1	164053398	164053598	+	645.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011345, intron 8 of 13)	intron (NM_011345, intron 8 of 13)	5264.0	NM_011345	20339.0	Mm.5245	NM_011345	ENSMUSG00000026582	Sele	CD62E|E-selectin|ELAM-1|Elam|LECAM2	selectin, endothelial cell	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-61199765-4	chr10	61199651	61199851	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081127, intron 21 of 21)	intron (NM_001081127, intron 21 of 21)	24489.0	NM_023064	65971.0	Mm.30227	NM_023064	ENSMUSG00000020096	Tbata	1700021K02Rik|AI428928|Spatial|Titest	thymus, brain and testes associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-113609299-2	chr7	113609199	113609399	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44312.0	NR_126544	69295.0	Mm.396150	NR_126544	ENSMUSG00000084984	Far1os	1700006P19Rik	fatty acyl CoA reductase 1, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81730050-4	chr15	81729965	81730165	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146174)	promoter-TSS (NM_001146174)	-146.0	NM_001358622	19387.0	Mm.270975	NM_011241	ENSMUSG00000022391	Rangap1	C79654|Fug1|mKIAA1835	RAN GTPase activating protein 1	protein-coding	6.70224124992968	6.66753543024763	6.61217705306918	6.94847766732479	6.43786099189065	6.36297875020832	6.50442344503971	6.95397912038717	-0.163235454486801	0.415090444060039	0.896676881011847
Merged-chr4-7154448-4	chr4	7154350	7154550	+	866.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4|SINE|ID	-163727.0	NM_145711	252838.0	Mm.435828	NM_145711	ENSMUSG00000041272	Tox	1700007F02Rik	thymocyte selection-associated high mobility group box	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-87703843-2	chr16	87703743	87703943	+	939.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_007520, intron 1 of 4)	intron (NM_007520, intron 1 of 4)	4889.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	2.03614579721498	0.860307101062955	2.16553088459553	0.826252000226158	1.17627078206431	0.864509531390659	1.58895208814183	1.39590157516541	-1.11789276869243	0.411899080396697	0.894597257730009
Merged-chr19-5638671-2	chr19	5638572	5638772	+	614.666626	f1_balb.idr|f1_c57bl6.idr	exon (NM_009045, exon 3 of 11)	exon (NM_009045, exon 3 of 11)	1182.0	NM_009045	19697.0	Mm.249966	NM_009045	ENSMUSG00000024927	Rela	p65	v-rel reticuloendotheliosis viral oncogene homolog A (avian)	protein-coding	-0.671382078390252	-0.807173774575103	-0.810489120138502	-0.812958928045151	-0.667488378944499	-0.17284631628757	-0.809782785978126	-0.812527574486807	2.23938593307923	0.418201330434241	1
Merged-chr11-77439853-2	chr11	77439753	77439953	+	608.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177710, intron 12 of 14)	B4|SINE|B4	-24060.0	NM_139129	216961.0	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-30708590-2	chr14	30708490	30708690	+	620.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6259.0	NM_019460	54650.0	Mm.294662	NM_019460	ENSMUSG00000006527	Sfmbt1	4930442N21Rik|9330180L21Rik|AA536974|Sfmbt|Smr	Scm-like with four mbt domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-99468215-4	chr12	99468119	99468319	+	826.020813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18145.0	NM_183186	71375.0	Mm.341972	NM_183186	ENSMUSG00000033713	Foxn3	5430426H20Rik|AA589593|AW556347|Ches1|Ches1l|HTLFL1	forkhead box N3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-24933457-2	chr16	24933360	24933560	+	919.833374	f0_balb.idr|f0_c57.idr	intron (NM_178665, intron 10 of 12)	intron (NM_178665, intron 10 of 12)	-126179.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-59306534-2	chr11	59306434	59306634	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_139298)	promoter-TSS (NM_139298)	-396.0	NM_139298	216795.0	Mm.218794	NM_139298	ENSMUSG00000000126	Wnt9a	Wnt14	wingless-type MMTV integration site family, member 9A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-47169159-4	chr19	47169069	47169269	+	877.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-9651.0	NM_021360	18011.0	Mm.313651	NM_021360	ENSMUSG00000006435	Neurl1a	2410129E16Rik|AI450910|AI481072|Neu1|Neur1|Neurl|Neurl1|Nlz|Rnf67	neuralized E3 ubiquitin protein ligase 1A	protein-coding	3.31357917416684	3.1433357054872	2.62211895381382	3.96976437505846	3.53918113874949	2.56315674297282	3.61719820792404	4.12869751862813	0.339238232954033	0.583547287671488	0.966599221005409
Merged-chr3-7613799-4	chr3	7613721	7613921	+	870.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008371)	promoter-TSS (NM_008371)	-61.0	NM_001313888	16196.0	Mm.3825	NM_008371	ENSMUSG00000040329	Il7	A630026I06Rik|Il-7|hlb368	interleukin 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-60217813-3	chr2	60217707	60217907	+	954.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020575, intron 1 of 9)	intron (NM_020575, intron 1 of 9)	7871.0	NM_020575	57438.0	Mm.260635	NM_020575	ENSMUSG00000026977	March7	Axo|Axot|Gtrgeo17	membrane-associated ring finger (C3HC4) 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-105698843-4	chr5	105698791	105698991	+	992.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1078.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	2.95031633827482	2.60437812369689	2.37888559326606	2.44739314279373	3.27355751049051	2.12237912033749	3.13841714344169	2.58088923764129	0.483548880901333	0.51271144344253	0.945638053458749
Merged-chr2-25634422-3	chr2	25634276	25634476	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6402.0	NM_007995	14133.0	Mm.10510	NM_007995	ENSMUSG00000026938	Fcna	Fcn1	ficolin A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-36645351-2	chr15	36645251	36645451	+	861.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR12BD_Mm|LTR|ERVK	-36378.0	NM_008774	18458.0	Mm.371570	NM_008774	ENSMUSG00000022283	Pabpc1	PABP|Pabp1|PabpI|Pabpl1|ePAB	poly(A) binding protein, cytoplasmic 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-63404263-2	chr4	63404163	63404363	+	832.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001045514)	promoter-TSS (NM_001045514)	-818.0	NM_001045514	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-114643144-4	chr6	114643048	114643248	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028835)	promoter-TSS (NM_028835)	51.0	NM_001253718	74244.0	Mm.275332	NM_028835	ENSMUSG00000030314	Atg7	1810013K23Rik|Agp7|Apg7l|Atg7l|Gm21553	autophagy related 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-35496106-4	chr2	35496003	35496203	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34654.0	NM_001145821	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-121123872-2	chr5	121123772	121123972	+	713.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	67525.0	NM_001109992	19247.0	Mm.8681	NM_011202	ENSMUSG00000043733	Ptpn11	2700084A17Rik|AW536184|PTP1D|PTP2C|SAP-2|SH-PTP2|SH-PTP3|SHP-2|Shp2|Syp	protein tyrosine phosphatase, non-receptor type 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-44166860-3	chr4	44166763	44166963	+	854.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038993, intron 1 of 11)	intron (NM_001038993, intron 1 of 11)	675.0	NM_175201	73469.0	Mm.262859	NM_175201	ENSMUSG00000035696	Rnf38	1700065B19Rik|2610202O07Rik|AA673263|Oip1	ring finger protein 38	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-43180239-1	chr5	43180139	43180339	+	914.0	f0_balb.idr	intron (NR_028417, intron 5 of 7)	intron (NR_028417, intron 5 of 7)	-53224.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-50330412-4	chr17	50330310	50330510	+	903.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36790.0	NM_001277863	13164.0	Mm.280641	NM_010021	ENSMUSG00000010592	Dazl	Daz-like|Dazh|Dazl1|Dazla|Tpx-2|Tpx2	deleted in azoospermia-like	protein-coding	2.87338488853004	2.89380858811539	1.88541144868401	2.42175800665054	2.89873752534656	3.9448806518424	3.41896809015602	4.04933900621543	1.78470166515849	0.00695529441812271	0.0848065268583702
Merged-chr19-43526301-1	chr19	43526201	43526401	+	606.0	f1_c57bl6.idr	Intergenic	Intergenic	-1696.0	NM_010324	14718.0	Mm.19039	NM_010324	ENSMUSG00000025190	Got1	AI789014|Got-1|cAspAT|cCAT	glutamic-oxaloacetic transaminase 1, soluble	protein-coding	0.964814889837277	1.55655915254483	0.812534093519471	1.04255958980305	0.410626133262073	0.44394305263787	0.433278281004019	0.424046570198466	-4.63548869184238	0.00669542518797267	0.0824196765444214
Merged-chr10-127261917-4	chr10	127261819	127262019	+	824.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039000, intron 1 of 28)	MIRb|SINE|MIR	1444.0	NM_008447	16572.0	Mm.30355	NM_008447	ENSMUSG00000074657	Kif5a	D10Bwg0738e|Khc|Kif5|Kns|mKIAA4086	kinesin family member 5A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127763793-3	chr7	127763696	127763896	+	873.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172748, intron 9 of 10)	intron (NM_172748, intron 9 of 10)	-6019.0	NM_198424	269999.0	Mm.36852	NM_198424	ENSMUSG00000043964	Orai3	9930124N15|BC061259|Tmem142c	ORAI calcium release-activated calcium modulator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-90072939-3	chr16	90072853	90073053	+	843.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69284.0	NR_033476	100038709.0	Mm.484070	NR_033476		Gm10789	-	predicted gene 10789	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-39344140-2	chr6	39344040	39344240	+	917.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_155077, intron 12 of 13)	intron (NR_155077, intron 12 of 13)	33295.0	NR_155076	72144.0	Mm.482167	NM_028123	ENSMUSG00000029924	Slc37a3	2610507O21Rik|AU044904	solute carrier family 37 (glycerol-3-phosphate transporter), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-106683115-4	chr8	106683012	106683212	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173037)	promoter-TSS (NM_173037)	44.0	NM_173037	272538.0	Mm.87151	NM_173037	ENSMUSG00000041949	Tango6	AW413431|E330010G16|Tmco7	transport and golgi organization 6	protein-coding	6.41283334665506	6.30509798515343	6.29572968774654	5.73708683860714	5.71679089814576	6.26473851065237	4.9855223316676	5.69249664855423	-0.528893058374778	0.0588591287887793	0.358328349110683
Merged-chr2-71539846-2	chr2	71539746	71539946	+	774.666687	f1_balb.idr|f1_c57bl6.idr	intron (NR_039557, intron 2 of 3).2	intron (NR_039557, intron 2 of 3).2	-1955.0	NR_002854	111970.0	Mm.4543	NR_002854		Dlx1as	Dix1as|Dlx1os	distal-less homeobox 1, antisense	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-61687026-2	chr14	61686926	61687126	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-4653.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-104596404-2	chr8	104596304	104596504	+	793.599976	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001024606, exon 2 of 2)	3' UTR (NM_001024606, exon 2 of 2)	4936.0	NM_001024606	382051.0	Mm.290750	NM_001024606	ENSMUSG00000048371	Pdp2	4833426J09Rik|Gm1705|mKIAA1348	pyruvate dehyrogenase phosphatase catalytic subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167711158-2	chr2	167711058	167711258	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19981.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-169919418-2	chr1	169919318	169919518	+	657.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9521.0	NM_001033185	78465.0	Mm.291078	NM_001033185	ENSMUSG00000070532	Ccdc190	1700084C01Rik	coiled-coil domain containing 190	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-105830605-2	chr12	105830505	105830705	+	902.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347440, intron 19 of 20)	B1F2|SINE|Alu	45908.0	NM_001347440	18789.0	Mm.255877	NM_011112	ENSMUSG00000021111	Papola	Pap|PapIII|Plap	poly (A) polymerase alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-108901117-1	chr3	108901017	108901217	+	697.0	f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	10612.0	NM_025845	66921.0	Mm.51049	NM_025845	ENSMUSG00000027881	Prpf38b	1110021E09Rik|AU018955	PRP38 pre-mRNA processing factor 38 (yeast) domain containing B	protein-coding	0.74861496741738	0.267635944344695	0.262845553950448	0.814218916202214	0.380209927314174	0.268722603888737	0.263897847100112	0.73814906410319	-0.888913714633274	0.652568892732055	1
Merged-chr4-46344529-4	chr4	46344531	46344731	+	843.7333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_183298, exon 1 of 1)	exon (NM_183298, exon 1 of 1)	437.0	NM_183298	110805.0	Mm.354634	NM_183298	ENSMUSG00000070990	Foxe1	Titf2	forkhead box E1	protein-coding	-0.348324853748638	-0.33555314411787	-0.339743496023218	0.366282733635985	0.0307630015051776	-0.334607747566582	-0.338819798973444	-0.177427420743203	-0.709491105609446	0.775891147258208	1
Merged-chr14-30192946-3	chr14	30192825	30193025	+	729.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083616, intron 4 of 46)	intron (NM_001083616, intron 4 of 46)	160561.0	NM_001302637	12289.0	Mm.9772	NM_028981	ENSMUSG00000015968	Cacna1d	8430418G19Rik|C79217|Cach3|Cacn4|Cacnl1a2|Cav1.3|Cchl1a|Cchl1a2|D-LTCC	calcium channel, voltage-dependent, L type, alpha 1D subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180973390-2	chr1	180973290	180973490	+	785.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144794, intron 22 of 22)	intron (NM_144794, intron 22 of 22)	30872.0	NM_144794	208795.0	Mm.185518	NM_144794	ENSMUSG00000026519	Tmem63a	BC014795|Tmem64a	transmembrane protein 63a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-35984549-2	chr16	35984449	35984649	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008465, intron 1 of 13)	B1_Mus1|SINE|Alu	1186.0	NM_008465	16646.0	Mm.3991	NM_008465	ENSMUSG00000022905	Kpna1	AW494490|IPOA5|NPI1|Rch2|mSRP1	karyopherin (importin) alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-141424560-2	chr6	141424460	141424660	+	636.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_018779, intron 2 of 15)	intron (NM_018779, intron 2 of 15)	84007.0	NR_033555	100093700.0	Mm.483778	NR_033555	ENSMUSG00000107456	Gm10400	-	predicted gene 10400	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-82561494-2	chr18	82561394	82561594	+	698.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025255, intron 1 of 5)	intron (NM_001025255, intron 1 of 5)	6986.0	NM_001025254	17196.0	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-137942891-3	chr2	137942766	137942966	+	771.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-313718.0	NM_001025431	228662.0	Mm.153405	NM_145534	ENSMUSG00000062098	Btbd3	mKIAA0952	BTB (POZ) domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-128379023-4	chr7	128378922	128379122	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026418, intron 4 of 4)	MLT1C|LTR|ERVL-MaLR	39150.0	NM_026418	67865.0	Mm.18635	NM_026418	ENSMUSG00000030844	Rgs10	2310010N19Rik	regulator of G-protein signalling 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-63243747-4	chr10	63243645	63243845	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026101)	promoter-TSS (NM_026101)	-52.0	NM_030114	67345.0	Mm.234437	NM_026101	ENSMUSG00000020064	Herc4	1700056O17Rik|4921531D01Rik|9530080M15Rik|mKIAA1593	hect domain and RLD 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-61224361-2	chr19	61224261	61224461	+	649.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_009970)	TTS (NM_009970)	4057.0	NM_009970	12982.0	Mm.287228	NM_009970	ENSMUSG00000059326	Csf2ra	CD116|Csfgmra|GM-CSF-Ra|GM-CSFR	colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-94226250-3	chr6	94226156	94226356	+	876.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_130996, intron 1 of 1)	intron (NR_130996, intron 1 of 1)	11186.0	NR_130996	78178.0	Mm.452749	NR_130996	ENSMUSG00000045095	4930511A08Rik	-	RIKEN cDNA 4930511A08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-102714661-1	chr3	102714561	102714761	+	577.0	f1_c57bl6.idr	Intergenic	Intergenic	-20109.0	NM_027533	70747.0	Mm.27469	NM_027533	ENSMUSG00000027858	Tspan2	6330415F13Rik|B230119D02Rik|tspan-2	tetraspanin 2	protein-coding	-1.32440223303897	-1.29339468673833	-0.717877708899544	-1.31276353204239	-1.32392690786997	-1.29109028300231	-1.30162128075409	-1.31119997543009	-2.49510383040271	0.470258445164311	1
Merged-chr17-73928962-2	chr17	73928862	73929062	+	885.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011723, intron 6 of 35)	(TTTTTG)n|Simple_repeat|Simple_repeat	21234.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-80946120-2	chr15	80946020	80946220	+	593.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-2370.0	NM_009634	11564.0	Mm.38151	NM_009634	ENSMUSG00000022407	Adsl	Adl|Asl	adenylosuccinate lyase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91138758-4	chr2	91138675	91138875	+	863.7333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177719, intron 33 of 34)	intron (NM_001177719, intron 33 of 34)	20631.0	NM_008653	17868.0	Mm.10728	NM_008653	ENSMUSG00000002100	Mybpc3	-	myosin binding protein C, cardiac	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-156722386-4	chr2	156722273	156722473	+	900.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042487, intron 1 of 6)	intron (NM_001042487, intron 1 of 6)	1094.0	NM_001042487	228836.0	Mm.22094	NM_146128	ENSMUSG00000061689	Dlgap4	AI225853|BC024558|DAP-4|DAP4|SAPAP-4|Sapap4|WBP16	DLG associated protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-141145458-2	chr6	141145358	141145558	+	585.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	-103811.0	NM_018779	54611.0	Mm.103728	NM_018779	ENSMUSG00000041741	Pde3a	A930022O17Rik|C87899	phosphodiesterase 3A, cGMP inhibited	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-11514436-2	chr2	11514365	11514565	+	548.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177758, intron 1 of 14)	ORR1F|LTR|ERVL-MaLR	-12375.0	NM_001177757	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-27239794-1	chr3	27239694	27239894	+	545.0	f1_balb.idr	intron (NM_178772, intron 4 of 4)	intron (NM_178772, intron 4 of 4)	56790.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-63034424-2	chr9	63034324	63034524	+	687.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53545.0	NM_019663	56469.0	Mm.431253	NM_019663	ENSMUSG00000032405	Pias1	2900068C24Rik|Ddxbp1|GBP	protein inhibitor of activated STAT 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-18975440-3	chr2	18975340	18975540	+	881.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008845, intron 1 of 9)	intron (NM_008845, intron 1 of 9)	22681.0	NM_008845	18718.0	Mm.313977	NM_008845	ENSMUSG00000026737	Pip4k2a	AW742916|Pip5k2a	phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-30788367-3	chr16	30788284	30788484	+	894.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	188661.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-170209378-4	chr2	170209279	170209479	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66704.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-63510680-4	chr2	63510589	63510789	+	877.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	64599.0	NR_152174	667257.0	Mm.417007	NR_152174		Gm8541	EG667257	predicted gene 8541	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115119283-4	chr5	115119152	115119352	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007383)	promoter-TSS (NM_007383)	94.0	NM_007383	11409.0	Mm.18759	NM_007383	ENSMUSG00000029545	Acads	AI196007|Bcd-1|Bcd1|Hdlq8|SCAD	acyl-Coenzyme A dehydrogenase, short chain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-72939301-2	chr11	72939201	72939401	+	549.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4|LINE|L1	-21868.0	NM_016745	53313.0	Mm.6306	NM_016745	ENSMUSG00000020788	Atp2a3	SERCA3b|Serca3	ATPase, Ca++ transporting, ubiquitous	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-103577363-4	chr8	103577285	103577485	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26414.0	NR_045730	71058.0	Mm.67707	NR_045730	ENSMUSG00000110336	4933400L20Rik	-	RIKEN cDNA 4933400L20 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-84674905-3	chr3	84674802	84675002	+	972.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177260, intron 1 of 6)	U8|snRNA|snRNA	8710.0	NM_177260	320782.0	Mm.107370	NM_177260	ENSMUSG00000056498	Tmem154	9930117H01Rik	transmembrane protein 154	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-12412247-4	chr13	12412165	12412365	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144835, intron 17 of 44)	intron (NM_144835, intron 17 of 44)	16890.0	NM_144835	217995.0	Mm.171186	NM_144835	ENSMUSG00000050244	Heatr1	AA517551|B130016L12Rik|BC019693	HEAT repeat containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-87263045-1	chr17	87262945	87263145	+	668.0	f1_balb.idr	intron (NM_139295, intron 1 of 3)	intron (NM_139295, intron 1 of 3)	2902.0	NM_176808	193813.0	Mm.30251	NM_139295	ENSMUSG00000024150	Mcfd2	1810021C21Rik|F5f8d|Lman1ip|Sdnsf	multiple coagulation factor deficiency 2	protein-coding	1.04738386911575	0.895254363460045	1.40019768647309	0.833844624357328	0.792451657855598	2.96907158330985	2.07283836786603	2.82174715324086	3.78300809822124	0.00369918983343785	0.0529628635102473
Merged-chr14-20676166-2	chr14	20676066	20676266	+	766.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172596, intron 2 of 22)	intron (NM_172596, intron 2 of 22)	1845.0	NM_001168273	218811.0	Mm.173119	NM_172596	ENSMUSG00000039367	Sec24c	2610204K03Rik|mKIAA0079	Sec24 related gene family, member C (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-80416733-4	chr18	80416636	80416836	+	961.0166630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026295, intron 12 of 12)	intron (NM_026295, intron 12 of 12)	-52482.0	NM_001190373	240444.0	Mm.279568	NM_001190373	ENSMUSG00000059852	Kcng2	AA591524	potassium voltage-gated channel, subfamily G, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-47529818-3	chr9	47529714	47529914	+	954.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310841)	promoter-TSS (NM_001310841)	-356.0	NM_001310841	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	2.00441904334343	1.27883644159608	2.6040975320411	1.98677641015507	3.05955026132841	1.28577642386914	1.90751365094623	2.45213936340926	0.680023034766411	0.511097469606167	0.94512318675548
Merged-chr8-70769560-4	chr8	70769453	70769653	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008841, intron 13 of 15)	CpG	-2890.0	NM_023065	65972.0	Mm.30241	NM_023065		Ifi30	GILT|IP30	interferon gamma inducible protein 30	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-75603424-2	chr2	75603324	75603524	+	691.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55835.0	NM_146130	229279.0	Mm.316306	NM_053263	ENSMUSG00000059005	Hnrnpa3	2410013L13Rik|2610209F03Rik|2610510D13Rik|Hnrpa3	heterogeneous nuclear ribonucleoprotein A3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-132235337-3	chr2	132235263	132235463	+	843.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12425.0	NM_027478	70612.0	Mm.30116	NM_027478	ENSMUSG00000027341	Tmem230	5730494N06Rik|AA407821	transmembrane protein 230	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-121351332-4	chr10	121351197	121351397	+	961.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001361015, exon 1 of 13)	exon (NM_001361015, exon 1 of 13)	347.0	NM_001361015	74694.0	Mm.233833	NM_029057	ENSMUSG00000052302	Tbc1d30	4930505D03Rik|9530013E20Rik	TBC1 domain family, member 30	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-38345519-2	chr16	38345419	38345619	+	892.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1480.0	NM_001017429	12856.0	Mm.27396	NM_001017429	ENSMUSG00000046516	Cox17	AI037035	cytochrome c oxidase assembly protein 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-76473151-2	chr11	76473051	76473251	+	686.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346670, intron 3 of 21)	intron (NM_001346670, intron 3 of 21)	-4686.0	NM_001291186	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-45402846-3	chr5	45402777	45402977	+	637.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131933, intron 1 of 5)	LTR41B|LTR|ERVL	21523.0	NR_131933	52401.0	Mm.33854	NR_131933	ENSMUSG00000029092	D5Ertd615e	4930435H24Rik	DNA segment, Chr 5, ERATO Doi 615, expressed	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-98819300-4	chr13	98819194	98819394	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3845.0	NM_172591	218503.0	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-91019983-3	chr8	91019881	91020081	+	746.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177224, intron 25 of 39)	intron (NM_177224, intron 25 of 39)	-50076.0	NM_001282001	19651.0	Mm.235580	NM_011250	ENSMUSG00000031666	Rbl2	PRB2|RBR-2|Rb2|p130	RB transcriptional corepressor like 2	protein-coding	2.64780537750147	1.44875446396674	1.88550723254592	2.51939693518962	2.94277314718631	2.99342099974232	2.61391961677336	2.01888530078014	0.988509693221344	0.254085578869397	0.751985668675266
Merged-chr10-10470333-2	chr10	10470233	10470433	+	742.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001127353, intron 1 of 36)	intron (NM_001127353, intron 1 of 36)	1981.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	-0.683827617649116	-0.806298707081837	-0.808863539750827	-0.531586927009125	-0.680315029014729	-0.804040289832283	-0.808299450915359	-0.52750674848608	0.0329975727383968	0.990169535771834	1
Merged-chr17-28696288-2	chr17	28696188	28696388	+	718.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001168514, intron 2 of 12)	intron (NM_001168514, intron 2 of 12)	3720.0	NM_001357724	26416.0	Mm.311337	NM_011951	ENSMUSG00000053436	Mapk14	CSBP2|Crk1|Csbp1|Mxi2|PRKM14|PRKM15|p38|p38-alpha|p38MAPK|p38a|p38alpha	mitogen-activated protein kinase 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-58157853-2	chr2	58157753	58157953	+	667.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_139200, intron 1 of 7)	intron (NM_139200, intron 1 of 7)	2269.0	NM_139200	227929.0	Mm.273905	NM_139200	ENSMUSG00000026832	Cytip	A130053M09Rik|AI462064|C80816|Cbp|Cybr|Pscdbp	cytohesin 1 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95135144-4	chr3	95135035	95135235	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153121, intron 1 of 2)	intron (NM_153121, intron 1 of 2)	1047.0	NM_153121	217779.0	Mm.341945	NM_153121	ENSMUSG00000053769	Lysmd1	2610022K04Rik|AI415311	LysM, putative peptidoglycan-binding, domain containing 1	protein-coding	1.0976437451477	1.04734835891218	0.70617684005616	0.509233799565928	0.657740918111439	0.737314487684605	0.518372767083691	1.36433373225579	0.0453406217447587	0.977097437275799	1
Merged-chr3-95669880-2	chr3	95669780	95669980	+	955.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	11159.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	0.427611518433645	0.00430618286423157	-0.189688228056384	-0.193185898492845	0.360169288357978	-0.184123281529026	-0.188687494463627	-0.192575195545262	-0.518286931941691	0.829385627520621	1
Merged-chr3-51249426-2	chr3	51249326	51249526	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009834, intron 2 of 2)	intron (NM_009834, intron 2 of 2)	24979.0	NM_009834	12457.0	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80343782-2	chr10	80343682	80343882	+	682.333374	f1_balb.idr|f1_c57bl6.idr	intron (NR_104340, intron 6 of 11)	intron (NR_104340, intron 6 of 11)	4666.0	NM_001285435	66548.0	Mm.71891	NM_025629	ENSMUSG00000043822	Adamtsl5	2010109H09Rik|Thsd6	ADAMTS-like 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35673801-4	chr17	35673678	35673878	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010364)	promoter-TSS (NM_010364)	-35.0	NM_010364	14885.0	Mm.10182	NM_010364	ENSMUSG00000001524	Gtf2h4	AW545633|BTF2 p52|p52	general transcription factor II H, polypeptide 4	protein-coding	4.51490318890043	4.47151705219469	3.06716116146511	3.68373140651752	3.81887729301524	2.36985867236791	2.66440927207263	3.39584866196728	-1.25015231494197	0.0398726920952035	0.284306196369801
Merged-chr6-131387132-2	chr6	131387032	131387232	+	817.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011733, intron 1 of 8)	intron (NM_011733, intron 1 of 8)	1318.0	NM_139117	56449.0	Mm.458000	NM_011733	ENSMUSG00000030189	Ybx3	Csda|Dpba|MSY3|MSY4|Yb2|dbpA|oxyR	Y box protein 3	protein-coding	0.788710896479049	0.536233115094147	1.11561292736177	1.17306116774403	0.796029202616676	0.538160282905999	0.529554890880971	1.18122701901761	-0.682662971400898	0.675771041316083	1
Merged-chr6-108658579-4	chr6	108658462	108658662	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104577, intron 1 of 6)	intron (NR_104577, intron 1 of 6)	-2067.0	NM_011498	20893.0	Mm.2436	NM_011498	ENSMUSG00000030103	Bhlhe40	Bhlhb2|C130042M06Rik|CR8|Clast5|Dec1|Sharp2|Stra13|Stra14	basic helix-loop-helix family, member e40	protein-coding	6.34951852041245	6.23398790256643	6.21872006954991	6.93443747567134	6.28592478945462	6.83429972005222	6.34547009274844	6.45602758241015	0.0234708054216923	0.918071281743599	0.998431161219273
Merged-chr7-29155637-4	chr7	29155527	29155727	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146023, intron 3 of 7)	CpG	583.0	NM_001146023	73833.0	Mm.260890	NM_028661	ENSMUSG00000030590	Fam98c	1110006G06Rik|AI836081|AV026483|B230110F21Rik	family with sequence similarity 98, member C	protein-coding	4.56504980644535	3.46780608296468	4.8270906906278	3.44480840052439	3.92394886246708	4.25211028135375	4.11758748965845	3.86472424392973	-0.248705144905413	0.609116811567864	0.974944437725618
Merged-chr3-59205713-4	chr3	59205626	59205826	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177855, intron 15 of 43)	intron (NM_177855, intron 15 of 43)	5156.0	NM_028808	74191.0	Mm.90067	NM_028808	ENSMUSG00000036362	P2ry13	2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174	purinergic receptor P2Y, G-protein coupled 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28907420-4	chr7	28907310	28907510	+	962.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021895, intron 8 of 20)	intron (NM_021895, intron 8 of 20)	25754.0	NM_001110807	60594.0	Mm.476990	NM_021894	ENSMUSG00000054083	Capn12	CANP 12	calpain 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-45473040-2	chr5	45472940	45473140	+	748.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19289.0	NM_001163317	624224.0	Mm.475609	NM_001163317	ENSMUSG00000049530	Clrn2	EG624224	clarin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-3383130-4	chr18	3383016	3383216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029402)	promoter-TSS (NM_029402)	-109.0	NM_029402	71745.0	Mm.291707	NM_029402	ENSMUSG00000024231	Cul2	1300003D18Rik|4932411N15Rik|AI327301|mKIAA4106	cullin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26507431-4	chr17	26507345	26507545	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013642, intron 2 of 3)	intron (NM_013642, intron 2 of 3)	1027.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	5.74758858228294	5.14866682789249	5.24290675092079	5.20798574413121	5.42094557194833	4.77015373449695	5.17692643580754	4.53400942964653	-0.3973054277766	0.22231840244759	0.713711075427985
Merged-chr3-146813060-4	chr3	146812965	146813165	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011100)	promoter-TSS (NM_011100)	-119.0	NM_011100	18749.0	Mm.16766	NM_011100	ENSMUSG00000005034	Prkacb	CbPKA|Pkacb	protein kinase, cAMP dependent, catalytic, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-130520841-2	chr10	130520741	130520941	+	546.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1VL2|LINE|L1	-23462.0	NM_001103366	625131.0	Mm.469844	NM_001103366	ENSMUSG00000091511	Vmn2r87	EG625131	vomeronasal 2, receptor 87	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-50353400-3	chr14	50353290	50353490	+	765.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-4524.0	NM_205819	239081.0	Mm.291512	NM_205819	ENSMUSG00000051969	Tlr11	Gm287	toll-like receptor 11	protein-coding	2.89779262443865	1.50147693124237	2.30639385313762	2.9786824200646	2.84897958692688	2.55796004979622	3.48943648396017	1.90713504269088	0.523611664735428	0.53675767217723	0.953700051947242
Merged-chr11-119919457-2	chr11	119919357	119919557	+	579.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001085498)	TTS (NM_001085498)	5647.0	NM_001085498	208092.0	Mm.306673	NM_001085498	ENSMUSG00000025371	Chmp6	2400004G01Rik	charged multivesicular body protein 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135461942-2	chr5	135461842	135462042	+	690.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146001, intron 1 of 30)	PB1D11|SINE|Alu	-67396.0	NM_148932	107939.0	Mm.28399	NM_148932	ENSMUSG00000053293	Pom121	2610027A18Rik|C80273|mKIAA0618	nuclear pore membrane protein 121	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-75535320-2	chr9	75535220	75535420	+	866.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357828, intron 1 of 10)	Lx7|LINE|L1	24337.0	NM_016963	50875.0	Mm.38445	NM_016963	ENSMUSG00000058587	Tmod3	U-Tmod|UTMOD	tropomodulin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-15986327-4	chr16	15986191	15986391	+	950.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355731, intron 7 of 18)	AT_rich|Low_complexity|Low_complexity	99005.0	NM_007679	12609.0	Mm.347407	NM_007679	ENSMUSG00000071637	Cebpd	c/EBPdelta	CCAAT/enhancer binding protein (C/EBP), delta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-34142967-4	chr12	34142856	34143056	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271386, intron 24 of 27)	intron (NM_001271386, intron 24 of 27)	185285.0	NM_011658	22160.0	Mm.3280	NM_011658	ENSMUSG00000035799	Twist1	M-Twist|Pde|Ska10|Ska<m10Jus>|Twist|bHLHa38|pdt	twist basic helix-loop-helix transcription factor 1	protein-coding	4.3583307758795	3.69002714936086	4.21384200173738	3.98511278202186	4.42846293786694	4.05401261412571	3.92334065621627	4.06496148239062	0.0604928978313632	0.888877693818448	0.998431161219273
Merged-chr7-141338867-2	chr7	141338767	141338967	+	602.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001282073)	promoter-TSS (NM_001282073)	-84.0	NM_001282073	54006.0	Mm.28392	NM_016874	ENSMUSG00000058886	Deaf1	AU042387|C230009B13Rik|NUDR	DEAF1, transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-121925760-3	chr8	121925675	121925875	+	795.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007608, intron 3 of 6)	intron (NM_007608, intron 3 of 6)	17942.0	NM_001033485	407789.0	Mm.436576	NM_001033485		BC048644	-	cDNA sequence BC048644	protein-coding	3.72867811575921	2.77236161998355	3.90730240584702	3.29621931591276	3.75794621000205	2.79421289529001	3.99477686893559	3.76129008087403	0.229202742040994	0.686630146093714	0.996533206832645
Merged-chr3-88608252-2	chr3	88608152	88608352	+	860.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7955.0	NM_001198911	16800.0	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-100107049-2	chr12	100106949	100107149	+	734.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5282.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115313128-3	chr5	115313045	115313245	+	891.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131932, intron 1 of 1)	intron (NR_131932, intron 1 of 1)	12025.0	NR_131932	102639268.0	Mm.319998	NR_131932		Gm13830	-	predicted gene 13830	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-121929540-4	chr14	121929447	121929647	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026861, intron 4 of 8)	intron (NM_026861, intron 4 of 8)	-13773.0	NM_182806	110168.0	Mm.37405	NM_182806	ENSMUSG00000050350	Gpr18	-	G protein-coupled receptor 18	protein-coding	4.93754602479858	5.43111385602903	5.73945684707068	5.07433799753217	5.69423307685017	5.43214910071316	6.01028309281701	4.60632774246415	0.228721042411113	0.498657716981923	0.937268191386284
Merged-chr1-75219295-4	chr1	75219202	75219402	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009447)	promoter-TSS (NM_009447)	-8.0	NM_001313724	22145.0	Mm.1155	NM_009447	ENSMUSG00000026202	Tuba4a	M[a]4|Tuba4	tubulin, alpha 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-4908921-4	chr18	4908823	4909023	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	96437.0	NR_045881	100038439.0	Mm.387569	NR_045881	ENSMUSG00000097043	Gm10556	-	predicted gene 10556	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120763424-4	chr8	120763309	120763509	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	24770.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-59001404-3	chr13	59001299	59001499	+	956.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025074, intron 13 of 17)	intron (NM_001025074, intron 13 of 17)	193702.0	NM_001025074	18212.0	Mm.130054	NM_008745	ENSMUSG00000055254	Ntrk2	GP145-TrkB/GP95-TrkB|Tkrb|trk-B|trkB	neurotrophic tyrosine kinase, receptor, type 2	protein-coding	1.48696562197423	2.01453687689609	2.22358912146624	2.54970558049049	2.51540048435178	2.43698663950546	1.79518466259374	2.1730568107693	0.322025689200358	0.723517948452279	0.998431161219273
Merged-chr10-94523838-2	chr10	94523738	94523938	+	599.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_172051, intron 1 of 3)	intron (NM_172051, intron 1 of 3)	8981.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-103021026-4	chr3	103020928	103021128	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310693, intron 1 of 17)	CpG	482.0	NM_144901	229663.0	Mm.277713	NM_144901	ENSMUSG00000068823	Csde1	AA960392|BC016898|D3Jfr1|mKIAA0885|unr	cold shock domain containing E1, RNA binding	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81960947-4	chr15	81960861	81961061	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001282040)	promoter-TSS (NM_001282040)	-31.0	NM_001282041	29858.0	Mm.18939	NM_013872	ENSMUSG00000022474	Pmm1	C77612	phosphomannomutase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-59759103-1	chr10	59759003	59759203	+	549.0	f1_c57bl6.idr	intron (NM_001291443, intron 6 of 12)	intron (NM_001291443, intron 6 of 12)	56540.0	NM_001291443	216001.0	Mm.27199	NM_144822	ENSMUSG00000020111	Micu1	C730016L05Rik|Calc|Cbara1	mitochondrial calcium uptake 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-155137355-2	chr4	155137255	155137455	+	615.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081100, intron 12 of 13)	intron (NM_001081100, intron 12 of 13)	50751.0	NM_001356327	76866.0	Mm.200590	NM_001081100	ENSMUSG00000029049	Morn1	2900057D20Rik|4930417P05Rik|AU042805	MORN repeat containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-51334101-3	chr3	51334037	51334237	+	667.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023502, intron 1 of 9)	intron (NM_023502, intron 1 of 9)	6507.0	NM_001356358	69257.0	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-88032634-8	chr4	88032287	88032487	+	953.412476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027326, intron 1 of 10)	CpG	1020.0	NM_027326	70122.0	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-103315328-3	chr15	103315312	103315512	+	819.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013866, exon 7 of 8)	exon (NM_013866, exon 7 of 8)	-4974.0	NM_030720	80910.0	Mm.160369	NM_030720	ENSMUSG00000063234	Gpr84	EX33	G protein-coupled receptor 84	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-76015156-1	chr9	76015056	76015256	+	546.0	f1_balb.idr	exon (NM_173731, exon 1 of 9)	exon (NM_173731, exon 1 of 9)	179.0	NM_173731	208982.0	Mm.82306	NM_173731	ENSMUSG00000007908	Hmgcll1	BC037381	3-hydroxymethyl-3-methylglutaryl-Coenzyme A lyase-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-63921850-2	chr11	63921750	63921950	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_018805, exon 1 of 2)	exon (NM_018805, exon 1 of 2)	434.0	NM_018805	54710.0	Mm.274426	NM_018805	ENSMUSG00000070407	Hs3st3b1	3-OST-3B|3OST3B1|3Ost3b|AU041882|AW536289|Hs3st3b|m3-OST-3B	heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-76203143-4	chr16	76203074	76203274	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	80561.0	NR_040575	78215.0	Mm.243885	NR_040575		4930578N18Rik	-	RIKEN cDNA 4930578N18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-20481035-2	chr14	20480935	20481135	+	543.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009674)	promoter-TSS (NM_009674)	-902.0	NM_009674	11750.0	Mm.280231	NM_009674	ENSMUSG00000021814	Anxa7	AI265384|AI316497|Anx7|synexin	annexin A7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-134095235-4	chr1	134095122	134095322	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16020.0	NM_001284525	71884.0	Mm.328268	NM_027979	ENSMUSG00000026450	Chit1	2300002L19Rik	chitinase 1 (chitotriosidase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-39800383-4	chr18	39800300	39800500	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26903.0	NM_011033	18459.0	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-161057423-2	chr1	161057336	161057536	+	646.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172644, intron 8 of 16)	intron (NM_172644, intron 8 of 16)	13224.0	NM_172644	226539.0	Mm.28125	NM_172644	ENSMUSG00000026709	Dars2	5830468K18Rik|aspRS	aspartyl-tRNA synthetase 2 (mitochondrial)	protein-coding	-1.31349849087795	-1.28274354783242	-1.29349452597086	-1.3023256995151	-1.3130151546297	-1.28041376602105	-0.694015972326031	-1.30074492367298	2.57396649482007	0.456321314346772	1
Merged-chr16-95701951-4	chr16	95701860	95702060	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011809)	promoter-TSS (NM_011809)	-447.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-119292650-1	chr4	119292550	119292750	+	558.0	f0_balb.idr	intron (NM_011732, intron 2 of 7)	intron (NM_011732, intron 2 of 7)	1863.0	NM_011732	22608.0	Mm.258204	NM_011732	ENSMUSG00000028639	Ybx1	1700102N10Rik|C79409|EF1A|MSY1|Nsep1|YB-1|dbpB|mYB-1a	Y box protein 1	protein-coding	-0.311843183099418	-0.766701022838102	-0.769777834882444	-0.772145876086986	-0.775483384570713	-0.766006314403769	-0.311767054070988	-0.771732555174591	-0.00684721864641614	0.998186576973833	1
Merged-chr16-92699730-1	chr16	92699630	92699830	+	736.5	f1_balb.idr	intron (NM_001111022, intron 2 of 6)	intron (NM_001111022, intron 2 of 6)	-2401.0	NM_009821	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	-0.287108607193575	-0.413080166074398	0.132562162030395	-0.419704301153541	0.039939100436873	-0.412234424259025	-0.415999610205832	-0.4192017237836	-0.567975339597061	0.82476500607456	1
Merged-chr19-34526913-3	chr19	34526825	34527025	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021460, intron 1 of 9)	intron (NM_021460, intron 1 of 9)	549.0	NM_001111100	16889.0	Mm.157545	NM_021460	ENSMUSG00000024781	Lipa	AA960673|Lal|Lip-1|Lip1	lysosomal acid lipase A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-195012736-4	chr1	195012644	195012844	+	933.5166630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4655.0	NR_015566	320977.0	Mm.99905	NR_015566	ENSMUSG00000096929	A330023F24Rik	C030002C11Rik	RIKEN cDNA A330023F24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-136913280-2	chr3	136913180	136913380	+	877.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008913, intron 10 of 13)	intron (NM_008913, intron 10 of 13)	243214.0	NM_001293622	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-113302897-2	chr9	113302797	113302997	+	636.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	284255.0	NR_040760	102688.0	Mm.394901	NR_040760	ENSMUSG00000109890	AU023762	-	expressed sequence AU023762	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-31354784-2	chr16	31354684	31354884	+	573.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29494.0	NR_155301	102636590.0	Mm.45825	NR_155301		AV205837	-	expressed sequence AV205837	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-116263312-2	chr6	116263212	116263412	+	685.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001309446)	promoter-TSS (NM_001309446)	-907.0	NM_001309446	67492.0	Mm.272772	NM_001081317	ENSMUSG00000042213	Zfand4	Anubl1	zinc finger, AN1-type domain 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-146422015-4	chr3	146421969	146422169	+	787.049988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253770, intron 4 of 13)	L1M2|LINE|L1	17427.0	NM_001355661	99167.0	Mm.200783	NM_138744	ENSMUSG00000036825	Ssx2ip	AU014939|AU042321|Adip	synovial sarcoma, X 2 interacting protein	protein-coding	2.91419806184023	4.48085629938765	4.96310821066833	2.54363072488042	3.40233003131705	3.98536164931339	4.41929169231504	1.92646523323341	-0.523185556630688	0.614313586982617	0.977250439470701
Merged-chr15-34775927-4	chr15	34775822	34776022	+	904.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61433.0	NM_181317	16539.0	Mm.71045	NM_181317	ENSMUSG00000050963	Kcns2	E130006J24Rik|Kv9.2	K+ voltage-gated channel, subfamily S, 2	protein-coding	2.873012680653	2.76948291069356	1.76343107254329	3.09076098075953	2.58534975319562	2.67529231775647	2.32700543476171	2.25681336742403	-0.512039930185449	0.514337337184998	0.946798391882055
Merged-chr5-3512771-3	chr5	3512654	3512854	+	650.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 5 of 7)	intron (NM_009873, intron 5 of 7)	-31079.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-107597589-4	chr5	107597481	107597681	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163461)	promoter-TSS (NM_001163461)	58.0	NM_133248	170823.0	Mm.41417	NM_133248	ENSMUSG00000029276	Glmn	9330160J16Rik|AW227515|Fap48|Fap68	glomulin, FKBP associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-112217804-4	chr2	112217672	112217872	+	883.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6BA|LTR|ERVK	-22069.0	NM_207206	99010.0	Mm.33438	NM_207206	ENSMUSG00000027134	Lpcat4	AI505034|Agpat7|Aytl3|LPEAT2	lysophosphatidylcholine acyltransferase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-90477307-3	chr6	90477228	90477428	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001355668, exon 3 of 3)	3' UTR (NM_001355668, exon 3 of 3)	14752.0	NM_023184	66277.0	Mm.38343	NM_023184	ENSMUSG00000030087	Klf15	1810013I09Rik|AV048136|AW494632|CKLF|KKLF	Kruppel-like factor 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-34250867-4	chr13	34250768	34250968	+	915.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033167, intron 3 of 10)	intron (NM_001033167, intron 3 of 10)	87904.0	NM_001110515	69666.0	Mm.24788	NM_001101430	ENSMUSG00000071451	Psmg4	PAC-4|mPAC4	proteasome (prosome, macropain) assembly chaperone 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-111640491-3	chr13	111640375	111640575	+	800.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45703.0	NM_172593	218613.0	Mm.31012	NM_172593	ENSMUSG00000032727	Mier3	5730509D14|AU015422|D130064H19Rik	MIER family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-45610444-4	chr17	45610310	45610510	+	867.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4A|LINE|L1	-8308.0	NM_001177469	653016.0	Mm.45676	NM_001177468	ENSMUSG00000079471	Mymx	EG653016|Esgp|Gm7325|minion|myomerger	myomixer, myoblast fusion factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-100559566-4	chr5	100559469	100559669	+	942.3250119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139198, intron 3 of 4)	intron (NM_139198, intron 3 of 4)	12636.0	NM_139198	231507.0	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	3.17594619262231	1.33268868290459	1.00619276509941	2.27010755618558	1.39039390776417	1.78273506532858	2.14837382301669	0.984809281811554	-1.39397501467945	0.230213574301846	0.72394357324632
Merged-chr2-103906796-4	chr2	103906692	103906892	+	852.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131913, intron 3 of 6)	intron (NR_131913, intron 3 of 6)	5841.0	NR_131913	100996933.0	Mm.394449	NR_131913		Lincred1	-	long intergenic non-protein coding RNA of erythroid differentiation 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-90253419-2	chr3	90253319	90253519	+	937.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028881)	promoter-TSS (NM_028881)	-439.0	NR_151631	74343.0	Mm.35627	NM_028881	ENSMUSG00000027936	Crtc2	4632407F12Rik|Torc2	CREB regulated transcription coactivator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-150779372-4	chr2	150779268	150779468	+	992.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-7428.0	NM_153781	110078.0	Mm.222584	NM_153781	ENSMUSG00000033059	Pygb	-	brain glycogen phosphorylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99107747-2	chr7	99107647	99107847	+	892.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 3 of 14)	intron (NM_178635, intron 3 of 14)	33397.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	-1.32440223303897	-1.29339468673833	-0.717877708899544	-1.31276353204239	-1.32392690786997	-1.29109028300231	-1.30162128075409	-1.31119997543009	-2.49510383040271	0.470258445164311	1
Merged-chr3-36554221-2	chr3	36554121	36554321	+	658.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019393, intron 4 of 11)	intron (NM_019393, intron 4 of 11)	1615.0	NM_019393	50911.0	Mm.116711	NM_019393	ENSMUSG00000027714	Exosc9	PM/Scl-75|Pmscl1|RRP45|p5|p6	exosome component 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-19021489-3	chr11	19021389	19021589	+	856.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2520.0	NM_010789	17268.0	Mm.356578	NM_010789	ENSMUSG00000020160	Meis1	C530044H18Rik|Evi8	Meis homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-47184022-2	chr19	47183922	47184122	+	856.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021360, intron 1 of 5)	intron (NM_021360, intron 1 of 5)	5202.0	NM_021360	18011.0	Mm.313651	NM_021360	ENSMUSG00000006435	Neurl1a	2410129E16Rik|AI450910|AI481072|Neu1|Neur1|Neurl|Neurl1|Nlz|Rnf67	neuralized E3 ubiquitin protein ligase 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-98168018-2	chr14	98167918	98168118	+	909.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038610, intron 1 of 10)	intron (NM_001038610, intron 1 of 10)	1747.0	NM_001038610	13134.0	Mm.320593	NM_007826	ENSMUSG00000055639	Dach1	Dac|Dach	dachshund family transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-128850113-4	chr6	128850024	128850224	+	978.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001254946, exon 3 of 3)	exon (NM_001254946, exon 3 of 3)	-23809.0	NM_030599	80782.0	Mm.6180	NM_030599	ENSMUSG00000079298	Klrb1b	Klrb1d|Ly55b|Ly55d|NKR-P1B|NKR-P1D|Nkrp1-b|Nkrp1b|Nkrp1d|ly-55b|ly-55d	killer cell lectin-like receptor subfamily B member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-84723439-2	chr10	84723339	84723539	+	558.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027423, intron 27 of 27)	intron (NM_027423, intron 27 of 27)	-32609.0	NM_001024918	71137.0	Mm.79070	NM_027689	ENSMUSG00000020037	Rfx4	4933412G19Rik|NYD-sp10	regulatory factor X, 4 (influences HLA class II expression)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-148530041-2	chr2	148529941	148530141	+	679.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-86506.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	1.08109161076679	1.5135262509412	1.70145930333578	1.42093045772405	0.914260710328452	1.52498393318239	1.71592193923066	1.42815307954425	-0.0639871180416101	0.958332522643177	0.998431161219273
Merged-chr4-32950850-3	chr4	32950725	32950925	+	891.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001012451)	promoter-TSS (NM_001012451)	1.0	NM_001012451	140577.0	Mm.214766	NM_080471	ENSMUSG00000040183	Ankrd6	-	ankyrin repeat domain 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36482663-4	chr18	36482562	36482762	+	788.799988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28167.0	NM_026027	67199.0	Mm.30184	NM_026027	ENSMUSG00000024346	Pfdn1	2700086I23Rik|AA408327|AU044714	prefoldin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80185488-2	chr7	80185388	80185588	+	919.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1353.0	NM_013659	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26453402-2	chr17	26453302	26453502	+	863.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38437.0	NM_001081656	240055.0	Mm.133211	NM_001081656	ENSMUSG00000034413	Neurl1b	C230078M08Rik|EG240055	neuralized E3 ubiquitin protein ligase 1B	protein-coding	-2.18138529563533	-2.15523716995652	-2.1631445789866	-2.16963996020037	-2.05513010215571	-2.15352360143315	-2.16135451490766	-2.16847729006863	0.759018020146679	0.829933115115583	1
Merged-chr15-77800228-2	chr15	77800128	77800328	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_022410, intron 3 of 40)	intron (NM_022410, intron 3 of 40)	41947.0	NM_022410	17886.0	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-65154990-3	chr1	65154903	65155103	+	762.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24139.0	NM_010497	15926.0	Mm.9925	NM_010497	ENSMUSG00000025950	Idh1	AI314845|AI788952|E030024J03Rik|Id-1|Idh-1|Idpc	isocitrate dehydrogenase 1 (NADP+), soluble	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-54715904-2	chr6	54715807	54716007	+	762.5	f0_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34283.0	NM_001289740	68235.0	Mm.233860	NM_026629	ENSMUSG00000038065	Mturn	2410066E13Rik|AI448550|B230212L03Rik	maturin, neural progenitor differentiation regulator homolog (Xenopus)	protein-coding	2.71049282288117	4.12511498833785	2.36971106648102	3.41555303550522	2.93965321568916	4.10124781444823	2.71894787737133	2.88379106231397	-0.0673993007836215	0.922359176483059	0.998431161219273
Merged-chr17-27028049-4	chr17	27027991	27028191	+	924.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149749, intron 1 of 6)	intron (NR_149749, intron 1 of 6)	536.0	NM_007523	12018.0	Mm.2443	NM_007523	ENSMUSG00000057789	Bak1	Bak|N-BAK1|N-Bak	BCL2-antagonist/killer 1	protein-coding	-0.797978119321443	-0.440716309563651	-0.934421439519016	-0.936578427517087	-0.939619253436085	-0.733914398437592	-0.93380405609622	-0.936201910045352	-1.81251342168736	0.528077165053654	1
Merged-chr10-115251431-4	chr10	115251354	115251554	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025706)	promoter-TSS (NM_025706)	39.0	NM_025706	66687.0	Mm.22252	NM_025706	ENSMUSG00000020130	Tbc1d15	4432405K22Rik|AU022358|AU023730|AW557774|Ly6dl|Rab7-GAP	TBC1 domain family, member 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45700910-4	chr7	45700778	45700978	+	967.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009800, intron 2 of 8)	intron (NM_009800, intron 2 of 8)	911.0	NM_009800	12348.0	Mm.27736	NM_009800	ENSMUSG00000003273	Car11	Ca11	carbonic anhydrase 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100344487-4	chr11	100344377	100344577	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19C|LTR|ERVK	10070.0	NM_010257	14459.0	Mm.4767	NM_010257	ENSMUSG00000017165	Gast	GAS	gastrin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165951844-2	chr2	165951744	165951944	+	621.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-40793.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-20199118-4	chr3	20199028	20199228	+	898.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23231.0	NR_105974	102465609.0		NR_105974	ENSMUSG00000099105	Mir7007	Gm27897|mmu-mir-7007	microRNA 7007	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-86220374-4	chr15	86220334	86220534	+	949.68335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145476, intron 1 of 12)	intron (NM_145476, intron 1 of 12)	5975.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-6168712-2	chr7	6168612	6168812	+	673.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR25A|LTR|ERVK	-3801.0	NM_028316	72667.0	Mm.274089	NM_028316	ENSMUSG00000044876	Zfp444	2810031J10Rik|6230401O10Rik|mFLJ00134	zinc finger protein 444	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97361868-2	chr6	97361768	97361968	+	986.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 6 of 23)	intron (NM_145148, intron 6 of 23)	97418.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-37011304-2	chr1	37011204	37011404	+	600.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-71777.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-54724154-8	chr3	54724060	54724260	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358017, intron 22 of 24)	intron (NM_001358017, intron 22 of 24)	11204.0	NM_027148	69639.0	Mm.29253	NM_027148	ENSMUSG00000027752	Exosc8	2310032N20Rik|CIP3|mKIAA4013	exosome component 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-69591243-1	chr5	69591143	69591343	+	548.0	f1_balb.idr	intron (NM_001359239, intron 1 of 6)	intron (NM_001359239, intron 1 of 6)	1061.0	NM_001347363	67980.0	Mm.33830	NM_027681	ENSMUSG00000029209	Gnpda2	4921523I18Rik|4933412A11Rik|BB189630|GNPDA|Gnp2|Sb52|mKIAA4008	glucosamine-6-phosphate deaminase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-50212503-2	chr11	50212403	50212603	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1683.0	NM_011018	18412.0	Mm.40828	NM_011018	ENSMUSG00000015837	Sqstm1	A170|OSF-6|Osi|STAP|STONE14|p62	sequestosome 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-76458972-4	chr11	76458926	76459126	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346670, intron 9 of 21)	intron (NM_001346670, intron 9 of 21)	9439.0	NM_001291186	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	4.52525738518	4.15156391459605	4.36113725659941	4.55523962940465	3.80302442503441	3.37254222468516	3.36878931325974	4.16427970105043	-0.927246513761279	0.0368917629811603	0.272827149762474
Merged-chr8-105325639-2	chr8	105325539	105325739	+	685.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025486)	promoter-TSS (NM_025486)	637.0	NM_177449	234684.0	Mm.381717	NM_177449	ENSMUSG00000041679	Lrrc29	A630024J02Rik|FBL9|FBXL9	leucine rich repeat containing 29	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-192753493-4	chr1	192753406	192753606	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144881, intron 2 of 11)	intron (NM_144881, intron 2 of 11)	17713.0	NM_144881	226861.0	Mm.145857	NM_144881	ENSMUSG00000037375	Hhat	2810432O22Rik|AI462858|AP-2CRE|Skn|Tg(TFAP2A-cre)1Will	hedgehog acyltransferase	protein-coding	5.07057294260096	5.44488758840142	5.79926042067894	5.59705959832265	5.04839670731402	6.04115832105467	5.14577407653913	5.62084015462356	0.0172646344821684	0.955473122542505	0.998431161219273
Merged-chr9-106268445-2	chr9	106268365	106268565	+	661.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12596.0	NM_027354	70235.0	Mm.23054	NM_027354	ENSMUSG00000023345	Poc1a	2510040D07Rik|Wdr51a|cha	POC1 centriolar protein A	protein-coding	0.187550800797117	0.447513899803564	0.207443409123881	0.399412319420564	0.189426923361104	0.944164092868513	0.209541486413229	1.36996137472625	2.84528995416965	0.142039013829391	1
Merged-chr1-74394654-2	chr1	74394554	74394754	+	751.299988	f1_balb.idr|f1_c57bl6.idr	TTS (NR_029743)	TTS (NR_029743)	344.0	NR_029743	387219.0		NR_029743	ENSMUSG00000065468	Mir26b	Mirn26b|mir-26b|mmu-mir-26b	microRNA 26b	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-18436279-2	chr18	18436179	18436379	+	608.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	-855289.0	NR_045374	75162.0	Mm.60874	NR_045374		4930545E07Rik	-	RIKEN cDNA 4930545E07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-32598143-3	chr16	32598067	32598267	+	616.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10729.0	NM_011638	22042.0	Mm.28683	NM_011638	ENSMUSG00000022797	Tfrc	2610028K12Rik|CD71|E430033M20Rik|Mtvr1|TFR|TFR1|TR|Trfr|p90	transferrin receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-69179345-2	chr3	69179238	69179438	+	589.125	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43081.0	NM_027843	71619.0	Mm.98122	NM_027843	ENSMUSG00000098207	Arl14	9130014L17Rik|Arf7	ADP-ribosylation factor-like 14	protein-coding	3.65404508056366	2.41402792631824	2.49617132957071	3.25694729299503	2.31385552752682	3.31878194221273	3.11940139327778	3.27328844544572	-0.0306509284043644	0.964642816145972	0.998431161219273
Merged-chr12-38787893-4	chr12	38787791	38787991	+	995.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163154, intron 1 of 9)	intron (NM_001163154, intron 1 of 9)	4180.0	NM_001163154	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-89070922-4	chr1	89070793	89070993	+	851.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133816, intron 1 of 5)	CpG	478.0	NM_133816	98402.0	Mm.170983	NM_133816	ENSMUSG00000036206	Sh3bp4	AI594717|AW227605|BOG25	SH3-domain binding protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88336344-4	chr3	88336263	88336463	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_178246, exon 1 of 22)	5' UTR (NM_178246, exon 1 of 22)	103.0	NM_178246	229512.0	Mm.439830	NM_173188	ENSMUSG00000001415	Smg5	BC024683|mKIAA1089	Smg-5 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125684797-4	chr6	125684703	125684903	+	817.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011708, intron 50 of 51)	intron (NM_011708, intron 50 of 51)	-5616.0	NM_153589	243634.0	Mm.333398	NM_153589	ENSMUSG00000038115	Ano2	BC033409|Tmem16b	anoctamin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-43724950-1	chr19	43724850	43725050	+	613.0	f1_balb.idr	intron (NM_053103, intron 9 of 12)	Lx2A1|LINE|L1	28050.0	NM_144874	226139.0	Mm.248237	NM_144874	ENSMUSG00000040018	Cox15	2900026G05Rik	cytochrome c oxidase assembly protein 15	protein-coding	-1.12007123334057	-1.23751541721827	-0.799610455274731	-1.25644006657821	-1.26447365240828	-1.23526386158843	-1.24555334641492	-1.25491236783429	-2.40709883940037	0.4691507995815	1
Merged-chr17-31307266-2	chr17	31307166	31307366	+	587.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001242427, intron 2 of 19)	intron (NM_001242427, intron 2 of 19)	11042.0	NM_001242427	224674.0	Mm.311395	NM_153062	ENSMUSG00000024036	Slc37a1	G3PP	solute carrier family 37 (glycerol-3-phosphate transporter), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-36564759-4	chr5	36564674	36564874	+	949.81665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133910, intron 2 of 13)	MTEb|LTR|ERVL-MaLR	17623.0	NM_133910	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	3.01296575200646	3.79741320302209	3.52960250502739	3.57773420263898	3.61314712784315	3.50252059152696	2.82856924051955	3.4503883921655	-0.183868678789215	0.740999633465948	0.998431161219273
Merged-chr5-53872152-3	chr5	53872037	53872237	+	805.638916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144517, intron 13 of 20)	intron (NM_144517, intron 13 of 20)	62510.0	NM_144517	67249.0	Mm.28823	NM_144517	ENSMUSG00000039178	Tbc1d19	2810453K03Rik	TBC1 domain family, member 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21135174-4	chr9	21135062	21135262	+	925.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3887.0	NM_001205312	54721.0	Mm.20249	NM_018793	ENSMUSG00000032175	Tyk2	JTK1	tyrosine kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124118502-2	chr5	124118402	124118602	+	565.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_144509)	TTS (NM_144509)	2394.0	NM_144509	65105.0	Mm.29430	NM_144509	ENSMUSG00000029404	Arl6ip4	AA408210|AA408365|Aip-4|Srp25	ADP-ribosylation factor-like 6 interacting protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135931807-1	chr4	135931707	135931907	+	542.0	f1_balb.idr	intron (NM_024243, intron 4 of 7)	intron (NM_024243, intron 4 of 7)	11081.0	NM_024243	71665.0	Mm.439940	NM_024243	ENSMUSG00000028673	Fuca1	0610006A03Rik|9530055J05Rik|Afuc|Fuca	fucosidase, alpha-L- 1, tissue	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98024607-2	chr11	98024507	98024707	+	812.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1980.0	NM_001282978	12295.0	Mm.41252	NM_031173	ENSMUSG00000020882	Cacnb1	CAB1|Cchb1|Cchlb1	calcium channel, voltage-dependent, beta 1 subunit	protein-coding	0.114769268117913	0.132303849482897	0.686367875391906	0.421474731010778	0.115863632702318	0.133599296389436	0.69745387527634	0.426064602118422	0.0370312564364939	0.985474743192133	1
Merged-chr10-44676716-4	chr10	44676615	44676815	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-217967.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-30785087-2	chr16	30784987	30785187	+	541.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	185364.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-4334468-4	chr10	4334362	4334562	+	989.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031185, intron 2 of 3)	intron (NM_031185, intron 2 of 3)	53013.0	NM_001359811	381990.0	Mm.262466	NM_001033466	ENSMUSG00000075327	Zbtb2	Gm1103	zinc finger and BTB domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-61360378-4	chr14	61360271	61360471	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026598)	promoter-TSS (NM_026598)	74.0	NM_026598	68177.0	Mm.22758	NM_026598	ENSMUSG00000021928	Ebpl	5730442K12Rik|EBRP	emopamil binding protein-like	protein-coding	3.58297872791051	3.78760343673911	3.93169241432911	3.82803216477339	3.08575816410896	3.65191744919451	3.01238748919584	3.72176088697153	-0.577514353293946	0.264752030178634	0.767392863122061
Merged-chr16-61042559-2	chr16	61042459	61042659	+	607.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-437028.0	NM_007938	13840.0	Mm.455790	NM_007938	ENSMUSG00000055540	Epha6	Ehk2|Hek12|m-ehk2	Eph receptor A6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-76506768-2	chr14	76506737	76506937	+	653.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001177751, exon 3 of 3)	3' UTR (NM_001177751, exon 3 of 3)	2327.0	NM_009366	21807.0	Mm.153272	NM_009366	ENSMUSG00000022010	Tsc22d1	AA589566|AW105905|Egr5|TSC-22|Tgfb1i4|Tsc|Tsc22	TSC22 domain family, member 1	protein-coding	-0.0839574851163239	-0.0674590684026757	-0.072855450667804	0.650808698188567	-0.0829251779454006	0.300761951306632	0.399446952554634	-0.0762958507485769	-0.0297600323403809	0.989655917236282	1
Merged-chr1-36128665-4	chr1	36128581	36128781	+	843.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15632.0	NR_105862	102465540.0		NR_105862	ENSMUSG00000098752	Mir6897	Gm27652|mmu-mir-6897	microRNA 6897	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3924573-2	chr4	3924473	3924673	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019969, intron 1 of 5)	intron (NM_019969, intron 1 of 5)	13832.0	NM_019969	56711.0	Mm.331467	NM_019969	ENSMUSG00000003282	Plag1	-	pleiomorphic adenoma gene 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133175302-2	chr4	133175202	133175402	+	713.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153423, intron 1 of 8)	B1_Mus2|SINE|Alu	-20353.0	NR_105984	102466215.0		NR_105984	ENSMUSG00000099202	Mir7017	Gm27945|mmu-mir-7017	microRNA 7017	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127278433-4	chr7	127278251	127278451	+	893.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4292.0	NM_009266	20768.0	Mm.20294	NM_009266	ENSMUSG00000049091	Sephs2	Sps2|Ysg3	selenophosphate synthetase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-102519641-2	chr6	102519541	102519741	+	660.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-54974.0	NM_008779	18488.0	Mm.435479	NM_008779	ENSMUSG00000030075	Cntn3	Pang	contactin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-155735760-2	chr4	155735660	155735860	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001101506, intron 2 of 3)	intron (NM_001101506, intron 2 of 3)	956.0	NM_001101506	381582.0	Mm.379515	NM_001101506	ENSMUSG00000084845	Tmem240	EG381582|Gm5151	transmembrane protein 240	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4113906-4	chr19	4113807	4114007	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_075078)	TTS (NR_075078)	7668.0	NM_001276284	11632.0	Mm.10433	NM_016666	ENSMUSG00000024847	Aip	AA408703|AW476050|Ara9|D19Bwg1412e|Fkbp16|Xap2	aryl-hydrocarbon receptor-interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-45545147-4	chr19	45545051	45545251	+	896.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	15413.0	NM_001330506	56626.0	Mm.46509	NM_020032	ENSMUSG00000025218	Poll	1110003P06Rik|AV007317	polymerase (DNA directed), lambda	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5651543-2	chr19	5651443	5651643	+	647.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001164482, exon 16 of 16)	exon (NM_001164482, exon 16 of 16)	12164.0	NM_001164482	20469.0	Mm.3072	NM_011379	ENSMUSG00000056917	Sipa1	Spa1	signal-induced proliferation associated gene 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-24957350-2	chr2	24957250	24957450	+	600.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026021, intron 4 of 5)	intron (NM_026021, intron 4 of 5)	-5072.0	NM_001355561	67228.0	Mm.389248	NM_026044	ENSMUSG00000026975	Dph7	2810443J12Rik|AW060693|Wdr85	diphthamine biosynethesis 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-33939866-2	chr17	33939766	33939966	+	912.8333130000001	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020603)	promoter-TSS (NM_020603)	464.0	NM_001185182	14976.0	Mm.2948	NM_010385	ENSMUSG00000024309	Pfdn6	H-2Ke2|H2-Ke2|Ke-2	prefoldin subunit 6	protein-coding	-0.55220962508417	-0.544368016176395	-0.5469690061155	-0.548954500446183	-0.320318291759815	-0.232401193790957	-0.546398008285872	-0.181049205377906	3.26801343620221	0.211134879712225	1
Merged-chr3-101556789-3	chr3	101556693	101556893	+	763.583313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47914.0	NM_144900	11928.0	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding	1.55996103873749	1.61845159665348	1.06517667174696	0.680230870878445	0.985676222524831	0.704769600801207	1.35082382382279	0.681908247160903	-1.37968035711507	0.358534335278188	0.855888371402247
Merged-chr7-25299423-2	chr7	25299323	25299523	+	577.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1437.0	NM_001357350	18476.0	Mm.597	NM_008776	ENSMUSG00000005447	Pafah1b3	Pafahg|mus[g]	platelet-activating factor acetylhydrolase, isoform 1b, subunit 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-53464702-2	chr3	53464602	53464802	+	933.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173382, intron 1 of 12)	intron (NM_173382, intron 1 of 12)	885.0	NM_173382	212127.0	Mm.491292	NM_173382	ENSMUSG00000049504	Proser1	2810046L04Rik|9330161F11	proline and serine rich 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-82917700-4	chr18	82917594	82917794	+	986.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_033307)	TTS (NR_033307)	2866.0	NR_033307	75853.0	Mm.420737	NR_033307		4930592I03Rik	-	RIKEN cDNA 4930592I03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-105285748-1	chr4	105285648	105285848	+	821.0	f1_balb.idr	Intergenic	Intergenic	128401.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	0.534446073346277	0.769170873949336	0.293183481534446	0.797500089690052	0.42085724060822	0.644220467316897	0.294499749033228	0.447562707748163	-1.10301830301906	0.524543431541736	1
Merged-chr2-178078432-3	chr2	178078333	178078533	+	878.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162922)	promoter-TSS (NM_001162922)	-8.0	NM_001162922	353208.0	Mm.381194	NM_001162922	ENSMUSG00000078861	Zfp931	2810021G02Rik	zinc finger protein 931	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-124233101-1	chr8	124233001	124233201	+	644.0	f1_c57bl6.idr	intron (NM_139272, intron 1 of 15)	intron (NM_139272, intron 1 of 15)	1707.0	NM_139272	108148.0	Mm.33808	NM_139272	ENSMUSG00000089704	Galnt2	AI480629	polypeptide N-acetylgalactosaminyltransferase 2	protein-coding	1.60374965241362	0.781059427720018	0.760852164661841	2.49585170145446	1.51523257981331	0.785518361545088	1.01808389024486	1.34381469076341	-1.34839228128821	0.330550685266117	0.83197671091297
Merged-chr6-125357180-2	chr6	125357080	125357280	+	600.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011609, intron 2 of 9)	intron (NM_011609, intron 2 of 9)	7457.0	NM_011609	21937.0	Mm.1258	NM_011609	ENSMUSG00000030341	Tnfrsf1a	CD120a|FPF|TNF-R|TNF-R-I|TNF-R1|TNF-R55|TNF-alphaR1|TNFAR|TNFR60|TNFRI|TNFRp55|TNFalpha-R1|Tnfr-2|Tnfr1|p55|p55-R	tumor necrosis factor receptor superfamily, member 1a	protein-coding	-1.84333625941563	-1.81316502774353	-1.82228905723243	-1.68622116930682	-1.84121829473887	-1.81118781249149	-1.67666093954108	-1.82844225014088	0.037684011990387	0.991491645451152	1
Merged-chr1-74438180-4	chr1	74438081	74438281	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001310662, exon 24 of 24)	3' UTR (NM_001310662, exon 24 of 24)	28797.0	NM_009509	22349.0	Mm.471601	NM_009509	ENSMUSG00000026175	Vil1	Vil	villin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-4601785-4	chr10	4601623	4601823	+	933.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10266.0	NM_001302532	13982.0	Mm.9213	NM_007956	ENSMUSG00000019768	Esr1	ER|ER-alpha|ERa|ERalpha|ESR|Estr|Estra|Nr3a1	estrogen receptor 1 (alpha)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-102508548-2	chr14	102508448	102508648	+	803.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	474084.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-20787142-4	chr13	20787025	20787225	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6988.0	NM_001281854	27052.0	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	5.70515261460991	5.24758818446169	5.39720507756031	5.87226853894006	5.72458760395709	5.56209955712594	5.89869162218532	5.51401410803134	0.111587880152659	0.675114645072719	0.99440487726309
Merged-chr3-108113903-4	chr3	108113857	108114057	+	805.142883	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010306, intron 5 of 8)	intron (NM_010306, intron 5 of 8)	20891.0	NM_008141	14686.0	Mm.439652	NM_008141	ENSMUSG00000009108	Gnat2	AW490837|Gnat-2|Gt-2|Tcalpha	guanine nucleotide binding protein, alpha transducing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-4367331-4	chr18	4367228	4367428	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040328, intron 2 of 3)	intron (NR_040328, intron 2 of 3)	-8264.0	NM_001361008	67440.0	Mm.49826	NM_026157	ENSMUSG00000024234	Mtpap	0610027A18Rik|AW551379|Papd1	mitochondrial poly(A) polymerase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-28057151-4	chr3	28057066	28057266	+	923.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008875, intron 12 of 25)	intron (NM_008875, intron 12 of 25)	72995.0	NM_008875	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-155895401-1	chr4	155895301	155895501	+	731.5	f0_balb.idr	intron (NM_207223, intron 1 of 24)	intron (NM_207223, intron 1 of 24)	3526.0	NM_207223	140500.0	Mm.219591	NM_207223	ENSMUSG00000029033	Acap3	Centb5|Kiaa1716-hp|mKIAA1716	ArfGAP with coiled-coil, ankyrin repeat and PH domains 3	protein-coding	1.06629352078561	2.43149180884704	2.23101378738952	1.11268904891683	1.5066131114796	2.97007894292256	1.82573644615997	2.38187763963923	0.988952313244116	0.367185021039595	0.862214284611162
Merged-chr4-57673455-2	chr4	57673355	57673555	+	824.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001304544, intron 3 of 8)	intron (NM_001304544, intron 3 of 8)	105207.0	NM_172868	242481.0	Mm.331630	NM_172868	ENSMUSG00000090053	Palm2	53-H12|B130066I24|R75368|pEN70	paralemmin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-160175256-3	chr2	160175155	160175355	+	758.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	152239.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-97351333-3	chr15	97351231	97351431	+	957.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172293, intron 3 of 5)	intron (NM_172293, intron 3 of 5)	-104044.0	NM_001164602	105827.0	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-45239211-4	chr14	45239120	45239320	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027518, intron 1 of 6)	intron (NM_027518, intron 1 of 6)	19503.0	NM_027518	70713.0	Mm.343793	NM_027518	ENSMUSG00000049092	Gpr137c	6330416L11Rik|Gm908|TM7SF1L2	G protein-coupled receptor 137C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-46452764-2	chr18	46452664	46452864	+	600.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13052.0	NR_045438	72076.0	Mm.82766	NM_028086		Mospd4	2010013H21Rik	motile sperm domain containing 4	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-73724017-2	chr15	73723917	73724117	+	685.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166388)	promoter-TSS (NM_001166388)	-780.0	NM_001357591	19245.0	Mm.390807	NM_008975	ENSMUSG00000059895	Ptp4a3	AV088979|Prl-3|pPtp4a3	protein tyrosine phosphatase 4a3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-79590631-4	chr18	79590526	79590726	+	899.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-456269.0	NM_053117	93737.0	Mm.24678	NM_053117	ENSMUSG00000056214	Pard6g	2410049N21Rik|Par6a	par-6 family cell polarity regulator gamma	protein-coding	3.82494203853601	1.8224322556523	2.35965960540951	3.06516361490734	3.78143339431168	2.46886911613553	2.00692078093221	2.29983304365381	-0.234538107343009	0.779821492868323	0.998431161219273
Merged-chr1-9739803-2	chr1	9739703	9739903	+	631.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173443, intron 1 of 2)	RSINE1|SINE|B4	-7845.0	NR_040462	73331.0	Mm.460470	NR_040462		1700034P13Rik	-	RIKEN cDNA 1700034P13 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46514870-2	chr19	46514770	46514970	+	623.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_053100, intron 5 of 5)	MIRb|SINE|MIR	13222.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-44894486-2	chr17	44894386	44894586	+	589.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178652, intron 2 of 11)	intron (NM_178652, intron 2 of 11)	-13601.0	NM_029257	75341.0	Mm.386821	NM_029257		4930564C03Rik	-	RIKEN cDNA 4930564C03 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25333742-2	chr7	25333642	25333842	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001160400, intron 8 of 40)	intron (NM_001160400, intron 8 of 40)	16578.0	NM_001160400	269878.0	Mm.38527	NM_001160400	ENSMUSG00000045039	Megf8	AW049492|Egfl4|b2b1702.2Clo|b2b1702Clo|b2b288Clo|m687Ddg|mKIAA0817	multiple EGF-like-domains 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-4385658-1	chr10	4385558	4385758	+	566.0	f1_c57bl6.idr	intron (NM_001033466, intron 1 of 2)	B2_Mm1t|SINE|B2	1817.0	NM_001359811	381990.0	Mm.262466	NM_001033466	ENSMUSG00000075327	Zbtb2	Gm1103	zinc finger and BTB domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120492246-2	chr11	120492150	120492350	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013770, intron 1 of 10)	CpG	413.0	NM_013770	27376.0	Mm.3991	NM_013770	ENSMUSG00000025792	Slc25a10	Dic	solute carrier family 25 (mitochondrial carrier, dicarboxylate transporter), member 10	protein-coding	2.90152826854564	3.27229558316943	3.64296444551306	1.57110553873686	3.45415619442033	3.39464161472581	4.1585424280947	2.61401382406777	0.748991744263089	0.297547117043406	0.800257675359925
Merged-chr5-21568057-1	chr5	21567957	21568157	+	547.0	f0_balb.idr	intron (NM_028977, intron 2 of 3)	intron (NM_028977, intron 2 of 3)	24530.0	NM_028977	74511.0	Mm.439963	NM_028977	ENSMUSG00000039883	Lrrc17	37kDa|4833425M04Rik|6130400C22Rik|P37nb	leucine rich repeat containing 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76235399-2	chr15	76235299	76235499	+	950.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163576, intron 8 of 9)	B3A|SINE|B2	-4021.0	NM_011117	18810.0	Mm.234912	NM_011117	ENSMUSG00000022565	Plec	AA591047|AU042537|EBS1|PCN|PLTN|Plec1	plectin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-46259616-2	chr13	46259516	46259716	+	722.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-14105.0	NM_001005422	380842.0	Mm.188108	NM_001005422	ENSMUSG00000063529	Stmnd1	Gm1574	stathmin domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-84997855-2	chr17	84997755	84997955	+	621.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159498, intron 3 of 7)	ORR1B2|LTR|ERVL-MaLR	-30492.0	NM_009205	20532.0	Mm.227176	NM_009205	ENSMUSG00000024131	Slc3a1	D2H|NBAT|NTAA|RBAT	solute carrier family 3, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-34186831-2	chr10	34186731	34186931	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172508, intron 1 of 5)	intron (NM_172508, intron 1 of 5)	20720.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-53742158-2	chr18	53742058	53742258	+	711.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178686, intron 2 of 20)	intron (NM_178686, intron 2 of 20)	2389.0	NM_178686	225523.0	Mm.193678	NM_178686	ENSMUSG00000048799	Cep120	A230075C01|AU016693|Ccdc100	centrosomal protein 120	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191906678-4	chr1	191906572	191906772	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009579)	promoter-TSS (NM_009579)	-109.0	NM_009579	22782.0	Mm.9024	NM_009579	ENSMUSG00000037434	Slc30a1	AI839647|C130040I11Rik|Znt1	solute carrier family 30 (zinc transporter), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-37072691-3	chr19	37072590	37072790	+	691.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198300, intron 7 of 10)	intron (NM_198300, intron 7 of 10)	-101153.0	NR_045329	319931.0	Mm.446730	NR_045329	ENSMUSG00000097591	A330032B11Rik	-	RIKEN cDNA A330032B11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-113654412-2	chr5	113654312	113654512	+	567.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4022.0	NM_008153	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-8779868-2	chr10	8779767	8779967	+	581.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 8 of 19)	L1MB3|LINE|L1	106203.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-80078569-2	chr15	80078469	80078669	+	891.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028282)	promoter-TSS (NR_028282)	10.0	NR_028282	100302601.0		NR_028282	ENSMUSG00000077734	Snord83b	MBII-10	small nucleolar RNA, C/D box 83B	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115100678-4	chr11	115100587	115100787	+	833.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163753, intron 1 of 8)	intron (NM_001163753, intron 1 of 8)	9256.0	NM_001163753	58222.0	Mm.143789	NM_021411	ENSMUSG00000020732	Rab37	B230331O03Rik|B230354I04Rik	RAB37, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-84619675-2	chr3	84619575	84619775	+	789.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	26101.0	NM_207278	403175.0	Mm.83086	NM_207278	ENSMUSG00000047819	Tigd4	C130063O11Rik|Gm418	tigger transposable element derived 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89216022-4	chr3	89215850	89216050	+	946.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_149740)	promoter-TSS (NR_149740)	-638.0	NR_149740	21827.0	Mm.2114	NM_013691	ENSMUSG00000028047	Thbs3	TSP3|Thbs-3	thrombospondin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-26607362-4	chr19	26607284	26607484	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011416, intron 1 of 32)	CpG	2224.0	NM_011416	67155.0	Mm.491146	NM_011416	ENSMUSG00000024921	Smarca2	2610209L14Rik|SNF2alpha|Snf2l2|brahma|brm	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-103116172-4	chr11	103116078	103116278	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138753)	promoter-TSS (NM_138753)	-147.0	NM_138753	192231.0	Mm.8763	NM_138753	ENSMUSG00000048878	Hexim1	7330426E13Rik|CLP-1|Clp1|HIS1	hexamethylene bis-acetamide inducible 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-45107182-2	chr13	45107084	45107284	+	678.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-105088.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	1.15390373433832	0.584844425143589	0.575394297490303	1.02108301751046	1.40266993116681	0.968020333110759	0.930485576832759	0.569337214428629	0.682027372330294	0.670351269910547	1
Merged-chr11-104231795-2	chr11	104231695	104231895	+	629.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038609, intron 1 of 11)	CpG	359.0	NM_001285454	17762.0	Mm.1287	NM_010838	ENSMUSG00000018411	Mapt	AI413597|AW045860|Mtapt|Tau	microtubule-associated protein tau	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-103233121-4	chr11	103233011	103233211	+	899.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016896, intron 6 of 15)	intron (NM_016896, intron 6 of 15)	-14679.0	NM_177801	328019.0	Mm.189646	NM_177801	ENSMUSG00000044787	Spata32	4933400C05Rik|VAD1.2	spermatogenesis associated 32	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-81346036-2	chr7	81345936	81346136	+	559.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009092)	promoter-TSS (NM_009092)	-802.0	NM_009092	20068.0	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-10945589-2	chr16	10945489	10945689	+	566.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30792.0	NR_131135	545180.0	Mm.373756	NR_131135	ENSMUSG00000095369	Gm21859	-	predicted gene, 21859	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-27600419-2	chr3	27600319	27600519	+	820.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356953, intron 4 of 26)	intron (NM_001356953, intron 4 of 26)	-15424.0	NR_037275	100526525.0		NR_037275	ENSMUSG00000092695	Mir3092	mir-3092|mmu-mir-3092	microRNA 3092	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135872932-2	chr4	135872832	135873032	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_026383, exon 2 of 3)	5' UTR (NM_026383, exon 2 of 3)	914.0	NM_026383	52830.0	Mm.29159	NM_026383	ENSMUSG00000028675	Pnrc2	0610011E17Rik|D4Bwg0593e	proline-rich nuclear receptor coactivator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139540348-1	chr5	139540248	139540448	+	786.0	f1_balb.idr	intron (NR_040701, intron 3 of 3)	CpG	-3550.0	NM_013702	22255.0	Mm.42190	NM_013702	ENSMUSG00000029546	Uncx	Chx4|Uncx4.1	UNC homeobox	protein-coding	0.579886274088582	0.857206969009236	0.608293679330824	0.972781741418309	0.582580512880288	1.22289566917132	1.42406533158423	1.79742881348565	2.63014658995814	0.0939133750672654	0.475030638303984
Merged-chr4-149644788-2	chr4	149644688	149644888	+	918.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023051, intron 14 of 18)	(TGGG)n|Simple_repeat|Simple_repeat	10779.0	NR_105990	102465983.0		NR_105990	ENSMUSG00000098580	Mir7023	Gm27912|mmu-mir-7023	microRNA 7023	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-102998542-4	chr2	102998441	102998641	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	74972.0	NM_175094	27402.0	Mm.315011	NM_175094	ENSMUSG00000010914	Pdhx	AI481367|E3bp|Pdx1	pyruvate dehydrogenase complex, component X	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-62955092-4	chr9	62954995	62955195	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019663, intron 1 of 13)	MTE2b|LTR|ERVL-MaLR	25784.0	NM_019663	56469.0	Mm.431253	NM_019663	ENSMUSG00000032405	Pias1	2900068C24Rik|Ddxbp1|GBP	protein inhibitor of activated STAT 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-61900049-2	chr9	61899949	61900149	+	798.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14461.0	NM_018853	56040.0	Mm.3158	NM_018853	ENSMUSG00000007892	Rplp1	2410042H16Rik|Arpp1|C430017H15Rik	ribosomal protein, large, P1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-96539120-1	chr15	96539020	96539220	+	582.0	f0_c57.idr	Intergenic	Intergenic	-78277.0	NM_028148	72193.0	Mm.324474	NM_028148	ENSMUSG00000033228	Scaf11	1110061H03Rik|2610510E10Rik|AI462454|CASP11|SIP1|SRRP129|Sfrs2ip|Srsf2ip|mKIAA3013	SR-related CTD-associated factor 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69067063-3	chr11	69066980	69067180	+	919.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3729.0	NM_025838	66910.0	Mm.33964	NM_025838	ENSMUSG00000020895	Tmem107	1110004B13Rik|2810049P21Rik	transmembrane protein 107	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-147073142-3	chr5	147073041	147073241	+	950.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080795, intron 1 of 9)	intron (NM_080795, intron 1 of 9)	3431.0	NM_080795	140887.0	Mm.272203	NM_080795	ENSMUSG00000016520	Lnx2	9630046H24|AW209022	ligand of numb-protein X 2	protein-coding	2.16521024188179	2.56459048403623	2.00891053820917	2.90786109753045	2.93035853534656	2.44033078986699	2.92647119163263	2.92239194530615	0.731780686176869	0.327812269419551	0.830350093278487
Merged-chr11-106008034-4	chr11	106007927	106008127	+	706.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001037712)	promoter-TSS (NM_001037712)	-176.0	NM_001037712	192775.0	Mm.343850	NM_001037712	ENSMUSG00000001901	Kcnh6	m-erg2	potassium voltage-gated channel, subfamily H (eag-related), member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-98820603-2	chr7	98820503	98820703	+	548.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14509.0	NM_001285794	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-105808537-4	chr7	105808438	105808638	+	812.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_025301, exon 3 of 3)	3' UTR (NM_025301, exon 3 of 3)	2549.0	NM_025301	27397.0	Mm.44225	NM_025301	ENSMUSG00000030879	Mrpl17	MRP-L26|Rpml26	mitochondrial ribosomal protein L17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-16210761-4	chr3	16210655	16210855	+	930.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172677, intron 5 of 5)	MLT1F2|LTR|ERVL-MaLR	27590.0	NM_172677	229096.0	Mm.23834	NM_172677	ENSMUSG00000047213	Ythdf3	9130022A11Rik	YTH domain family 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116031844-2	chr11	116031744	116031944	+	964.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286006, intron 1 of 15)	intron (NM_001286006, intron 1 of 15)	1528.0	NM_172569	217331.0	Mm.297706	NM_172569	ENSMUSG00000020770	Unk	B230379M23Rik|Unkh|Zc3h5|Zc3hdc5|mKIAA1753	unkempt family zinc finger	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-21611229-3	chr5	21611135	21611335	+	825.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199632, intron 7 of 20)	L1M2|LINE|L1	34370.0	NM_001199632	320118.0	Mm.442295	NM_177076	ENSMUSG00000048520	Fbxl13	4921539K22Rik	F-box and leucine-rich repeat protein 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-22334184-3	chr10	22334094	22334294	+	961.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009018, intron 6 of 6)	L1_Mus1|LINE|L1	27474.0	NR_015465	606736.0	Mm.387042	NR_015465	ENSMUSG00000097352	C920009B18Rik	-	RIKEN cDNA C920009B18 gene	ncRNA	1.1795277447083	1.04117394275474	1.0110653795929	1.4549566307207	2.04018976222727	2.32442280616882	1.86060165618205	2.98888018777279	3.69949945565223	0.00216794418477614	0.0353647179852401
Merged-chr14-122296647-3	chr14	122296537	122296737	+	827.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029556, intron 1 of 7)	intron (NM_029556, intron 1 of 7)	-62999.0	NR_015532	68245.0	Mm.443285	NR_015532	ENSMUSG00000100585	1700108J01Rik	-	RIKEN cDNA 1700108J01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191194269-4	chr1	191194163	191194363	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10930.0	NM_007498	11910.0	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-20241315-3	chr16	20241204	20241404	+	818.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198599)	promoter-TSS (NM_198599)	54.0	NM_198599	208158.0	Mm.326383	NM_198599	ENSMUSG00000041205	Map6d1	A330066I15Rik	MAP6 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-29668404-2	chr2	29668304	29668504	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_054050, intron 1 of 23)	intron (NM_054050, intron 1 of 23)	48684.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-49051149-2	chr16	49051049	49051249	+	659.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-6337.0	NM_001166210	667772.0	Mm.301387	NM_001166210	ENSMUSG00000092009	Myh15	EG667772	myosin, heavy chain 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-21985085-2	chr3	21984985	21985185	+	709.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-91567.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-47979145-4	chr6	47979050	47979250	+	969.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25760.0	NM_178898	101197.0	Mm.241063	NM_178898	ENSMUSG00000045466	Zfp956	AI894139	zinc finger protein 956	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-113831628-1	chr5	113831528	113831728	+	606.0	f1_c57bl6.idr	Intergenic	Intergenic	-1127.0	NM_009151	20345.0	Mm.332590	NM_009151	ENSMUSG00000048163	Selplg	CD162|Psgl-1|Psgl1|Selp1|Selpl	selectin, platelet (p-selectin) ligand	protein-coding	-1.84354474832578	-1.81325489144778	-1.53416061964661	-1.82993901100912	-1.8414184563789	-1.81126990231468	-1.82034119297928	-1.82859217979378	-1.52252619601533	0.665276690233728	1
Merged-chr2-104581503-1	chr2	104581403	104581603	+	594.0	f1_c57bl6.idr	Intergenic	MamSINE1|SINE|tRNA	-8981.0	NM_177253	228410.0	Mm.259876	NM_145529	ENSMUSG00000027176	Cstf3	4732468G05Rik|C79532|CstF-77	cleavage stimulation factor, 3' pre-RNA, subunit 3	protein-coding	0.0844601907386927	-0.393784007930509	0.390887703726825	-0.401840770230464	-0.40681560974376	-0.392761127586699	-0.397324882230917	-0.401226641510238	-3.67313118976726	0.157546055676243	1
Merged-chr9-20690697-4	chr9	20690599	20690799	+	965.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357639, intron 1 of 5)	L1_Mus1|LINE|L1	36304.0	NM_001357635	244723.0	Mm.293552	NM_173777	ENSMUSG00000032172	Olfm2	A030009A06Rik	olfactomedin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-34118147-4	chr18	34118050	34118250	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-102834.0	NM_007462	11789.0	Mm.384171	NM_007462	ENSMUSG00000005871	Apc	AI047805|AU020952|AW124434|CC1|Min|mAPC	adenomatosis polyposis coli	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-73435062-4	chr15	73434976	73435176	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11885.0	NM_001358045	14083.0	Mm.254494	NM_007982	ENSMUSG00000022607	Ptk2	FADK 1|FAK|FRNK|Fadk|p125FAK	PTK2 protein tyrosine kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135241873-4	chr4	135241774	135241974	+	907.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013885, intron 1 of 5)	intron (NM_013885, intron 1 of 5)	30886.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-44226616-4	chr5	44226485	44226685	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173764)	promoter-TSS (NM_173764)	21.0	NM_173764	231225.0	Mm.30688	NM_173764	ENSMUSG00000046985	Tapt1	4932414K18Rik	transmembrane anterior posterior transformation 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10795190-4	chr19	10795098	10795298	+	871.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009852, intron 6 of 12)	intron (NM_009852, intron 6 of 12)	34860.0	NM_001037801	12511.0	Mm.290897	NM_009852	ENSMUSG00000024670	Cd6	-	CD6 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80941777-2	chr10	80941677	80941877	+	631.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11686.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-169958927-4	chr2	169958826	169959026	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	4261.0	NR_131974	446211.0	Mm.266854	NR_131974	ENSMUSG00000103935	AY702102	STDP1	cDNA sequence AY702102	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-72401404-4	chr4	72401292	72401492	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	200148.0	NR_027923	68285.0	Mm.37541	NR_027923		C630043F03Rik	AI851307	RIKEN cDNA C630043F03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70532160-1	chr8	70532060	70532260	+	587.0	f1_c57bl6.idr	intron (NM_001111066, intron 5 of 8)	intron (NM_001111066, intron 5 of 8)	4314.0	NM_001199631	14232.0	Mm.141864	NM_010223	ENSMUSG00000019428	Fkbp8	38kDa|FKBP-38|FKBP-8|FKBPR38|Fkbp38|mFKBP38	FK506 binding protein 8	protein-coding	0.586030239873981	-0.0221697107830109	-0.0292141078610621	-0.0346966564126401	-0.0425183956647655	0.990411900304197	-0.0276545259545137	0.15647162824844	1.19877931469139	0.583855073869819	1
Merged-chr15-12236891-2	chr15	12236791	12236991	+	661.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_172958, intron 5 of 15)	MTA_Mm|LTR|ERVL-MaLR	31863.0	NM_172958	268783.0	Mm.54460	NM_172958	ENSMUSG00000039458	Mtmr12	3Pap|4932703C11|C730015A02Rik|Pip3ap|mKIAA1682	myotubularin related protein 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-14003405-2	chr9	14003305	14003505	+	667.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	175689.0	NM_176836	72826.0	Mm.246174	NM_176836	ENSMUSG00000037808	Fam76b	2810485I05Rik|C78303	family with sequence similarity 76, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-60831529-2	chr11	60831429	60831629	+	862.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001172112, intron 1 of 6)	intron (NM_001172112, intron 1 of 6)	898.0	NM_145428	216820.0	Mm.21475	NM_145428	ENSMUSG00000042569	Dhrs7b	BC003479|C79874|C80074|PexRAP	dehydrogenase/reductase (SDR family) member 7B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-142356286-3	chr7	142356191	142356391	+	793.955566	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347541, intron 2 of 2)	intron (NM_001347541, intron 2 of 2)	15968.0	NM_177265	320802.0	Mm.154486	NM_177265	ENSMUSG00000045777	Ifitm10	6330512M04Rik|AI848576|DSPA3	interferon induced transmembrane protein 10	protein-coding	2.03518094982554	2.9130920563222	2.32918353868004	2.13924319307992	1.91654621929653	2.54786092478129	2.34694497133652	2.39058491140077	-0.192369600087592	0.816359732093445	0.998431161219273
Merged-chr12-84222823-4	chr12	84222741	84222941	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3960.0	NM_001163501	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-19830817-4	chr11	19830724	19830924	+	786.325012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-93618.0	NM_033523	114716.0	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding	3.28516513981212	2.42011174644756	2.50105958676808	3.38923797444706	2.78503906543169	2.8909389243891	3.50782394790006	3.02077113499636	0.167047298237147	0.802677809581458	0.998431161219273
Merged-chr2-59316723-3	chr2	59316628	59316828	+	898.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 9 of 20)	intron (NM_175464, intron 9 of 20)	69954.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-65689073-2	chr18	65688967	65689167	+	843.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_207255, exon 6 of 6)	3' UTR (NM_207255, exon 6 of 6)	-9201.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-34228618-1	chr19	34228518	34228718	+	679.0	f0_balb.idr	intron (NM_001360719, intron 3 of 10)	intron (NM_001360719, intron 3 of 10)	-4007.0	NM_001360720	76630.0	Mm.130952	NM_029682	ENSMUSG00000024776	Stambpl1	1700095N21Rik|8230401J17Rik|ALMalpha|AMSH-FP	STAM binding protein like 1	protein-coding	1.71349348025167	1.41382028572641	3.07115987296654	2.13176658299043	2.38287798866395	2.67942723236515	2.35206111415585	2.93217848722011	0.720004179415498	0.422417038564561	0.900322118218157
Merged-chr13-88823757-3	chr13	88823632	88823832	+	903.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037987, intron 1 of 10)	(CA)n|Simple_repeat|Simple_repeat	2260.0	NM_001037987	13612.0	Mm.125580	NM_010103	ENSMUSG00000034488	Edil3	Del-1|Del1|Sox2-cre|Sox2Cre|Tg(Sox2-cre)1Amc	EGF-like repeats and discoidin I-like domains 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-120586808-3	chr5	120586725	120586925	+	575.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145853, intron 1 of 27)	intron (NM_145853, intron 1 of 27)	1788.0	NM_145853	252972.0	Mm.114054	NM_145853	ENSMUSG00000032741	Tpcn1	5730403B01Rik|Tpc1|mKIAA1169	two pore channel 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-118606139-2	chr2	118606039	118606239	+	782.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009773, intron 3 of 22)	B3|SINE|B2	7928.0	NM_009773	12236.0	Mm.29133	NM_009773	ENSMUSG00000040084	Bub1b	AU045529|BUBR1	BUB1B, mitotic checkpoint serine/threonine kinase	protein-coding	0.0274935218557366	-0.093094476417422	-0.0975489996986989	0.402949357029631	0.150034530202823	-0.0920878973570576	-0.0965680515298342	0.409585548020039	0.263438309103118	0.904470436561806	1
Merged-chr9-103364922-4	chr9	103364832	103365032	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001134427)	promoter-TSS (NM_001134427)	47.0	NM_001134427	321022.0	Mm.261025	NM_175565	ENSMUSG00000032803	Cdv3	2510010F10Rik|C230084J24Rik|C79446|TPP36	carnitine deficiency-associated gene expressed in ventricle 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-8920394-2	chr3	8920294	8920494	+	607.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_025434, intron 1 of 2)	intron (NM_025434, intron 1 of 2)	3463.0	NM_025434	66230.0	Mm.38460	NM_025434	ENSMUSG00000040269	Mrps28	1500012D08Rik|AW061224	mitochondrial ribosomal protein S28	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-47263811-3	chr19	47263726	47263926	+	846.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001164717, exon 14 of 14)	3' UTR (NM_001164717, exon 14 of 14)	9763.0	NR_105961	102466782.0		NR_105961	ENSMUSG00000098786	Mir6995	Gm27576|mmu-mir-6995	microRNA 6995	ncRNA	-0.526603664056416	-0.867126641974841	-0.706198855956841	-0.589081529680554	-0.877562190876769	-0.864573936808123	-0.872233998090155	-0.874435782726735	-2.85067986605136	0.314380628851266	1
Merged-chr3-54276148-1	chr3	54276048	54276248	+	559.0	f1_c57bl6.idr	intron (NM_001253682, intron 4 of 11)	MTA_Mm|LTR|ERVL-MaLR	-84959.0	NM_001198766	50706.0	Mm.236067	NM_015784	ENSMUSG00000027750	Postn	A630052E07Rik|AI747096|OSF-2|Osf2|PLF|PN	periostin, osteoblast specific factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-116952913-4	chr2	116952814	116953014	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER21B|LTR|ERV1	52762.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-141054594-2	chr5	141054494	141054694	+	672.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53998.0	NM_175362	108723.0	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91183307-4	chr2	91183211	91183411	+	950.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145527)	promoter-TSS (NM_145527)	-264.0	NM_145527	228355.0	Mm.36410	NM_145527	ENSMUSG00000040687	Madd	9630059K23Rik|IG20	MAP-kinase activating death domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-181319745-4	chr2	181319655	181319855	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166665)	promoter-TSS (NM_001166665)	31.0	NM_001001882	269400.0	Mm.11333	NM_001001882	ENSMUSG00000038685	Rtel1	AI451565|AW540478|Rtel	regulator of telomere elongation helicase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-41024022-4	chr12	41023948	41024148	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053122)	promoter-TSS (NM_053122)	-42.0	NM_053122	93757.0	Mm.363813	NM_053122	ENSMUSG00000056899	Immp2l	AI853880|IMP2|Tg(HLA-A/H2-D)2Enge	IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-60734494-2	chr11	60734394	60734594	+	559.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	5831.0	NR_039559	100628625.0		NR_039559	ENSMUSG00000092734	Mir5100	mir-5100|mmu-mir-5100|mu-mir-5100	microRNA 5100	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-17479024-3	chr10	17478872	17479072	+	704.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-244256.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-89453259-1	chr10	89453159	89453359	+	792.333313	f0_balb.idr	TTS (NM_001163504)	TTS (NM_001163504)	-9292.0	NM_001033331	237436.0	Mm.11982	NM_001033331	ENSMUSG00000074802	Gas2l3	8430435B07Rik|Gm240	growth arrest-specific 2 like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-25515695-2	chr14	25515595	25515795	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 2 of 23)	intron (NM_183208, intron 2 of 23)	-18744.0	NR_037236	100526533.0		NR_037236	ENSMUSG00000093081	Mir3075	mir-3075|mmu-mir-3075	microRNA 3075	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3775062-4	chr4	3774941	3775141	+	982.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 10 of 12)	intron (NM_001111096, intron 10 of 12)	60077.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	2.23178704979355	4.40385271261559	2.45726990532821	2.91027388554443	2.25430525073531	4.26155220220095	2.47958426213233	2.92671486750091	-0.112657251168984	0.885774966731464	0.998431161219273
Merged-chr18-60559499-2	chr18	60559399	60559599	+	792.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001357462)	TTS (NM_001357462)	-1287.0	NM_025776	66810.0	Mm.275106	NM_025776	ENSMUSG00000024604	Rbm22	8430430L24Rik	RNA binding motif protein 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-86955885-3	chr11	86955778	86955978	+	984.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005341, intron 2 of 4)	intron (NM_001005341, intron 2 of 4)	37884.0	NM_001005341	77864.0	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-100983895-2	chr15	100983795	100983995	+	821.099976	f1_balb.idr|f1_c57bl6.idr	exon (NM_011323, exon 11 of 26)	exon (NM_011323, exon 11 of 26)	47624.0	NM_011323	20273.0	Mm.385012	NM_011323	ENSMUSG00000023033	Scn8a	AI853486|C630029C19Rik|NaCh6|Nav1.6|dmu|med|mnd-2|mnd2|nmf2|nmf335|nmf58|nur14|seal	sodium channel, voltage-gated, type VIII, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-146497281-2	chr4	146497181	146497381	+	560.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR18A_MM|LTR|ERVK	-4719.0	NM_001243138	100041433.0	Mm.441741	NM_001243138	ENSMUSG00000056300	Zfp981	Gm13247	zinc finger protein 981	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80132881-2	chr10	80132781	80132981	+	722.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_036582, intron 10 of 10)	intron (NR_036582, intron 10 of 10)	4506.0	NM_001195268	100503659.0	Mm.485395	NM_015761	ENSMUSG00000035640	Cbarp	9630008F14|Dos|R29144/1	calcium channel, voltage-dependent, beta subunit associated regulatory protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-4238083-2	chr12	4237983	4238183	+	659.166626	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001204912, exon 2 of 2)	3' UTR (NM_001204912, exon 2 of 2)	4056.0	NM_001204912	69709.0	Mm.250552	NM_001204912	ENSMUSG00000096199	Ptrhd1	2410017P09Rik	peptidyl-tRNA hydrolase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-83164829-1	chr8	83164729	83164929	+	767.0	f1_c57bl6.idr	promoter-TSS (NM_027758)	promoter-TSS (NM_027758)	-523.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	1.29020357960307	0.320392933850534	0.703511498357813	0.301686904855977	1.43873940286105	0.322731963528991	0.312234945503337	0.303131176867669	-0.0324725356455362	0.986589676141468	1
Merged-chr8-117285236-4	chr8	117285132	117285332	+	923.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	28213.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129791200-3	chr4	129791092	129791292	+	952.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29287.0	NM_008974	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	1.23666058683638	0.940979326359996	1.86830307966351	0.907211463962931	1.89421614082993	2.1571623832823	1.34994547461671	1.308366739609	1.36756965187389	0.274410981331113	0.778541872770812
Merged-chr8-61607750-4	chr8	61607605	61607805	+	870.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293772, intron 10 of 21)	intron (NM_001293772, intron 10 of 21)	-16536.0	NM_001293774	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	1.87779111270537	1.07383029408871	1.72919218610069	1.98416949854999	1.20434225714808	1.66429074728724	1.45707983831287	1.80144862298297	-0.54547444470873	0.632689099636553	0.982230082053879
Merged-chr9-4443096-4	chr9	4443014	4443214	+	955.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113180, intron 14 of 16)	B2_Mm2|SINE|B2	66562.0	NM_145609	78100.0	Mm.206549	NM_145609	ENSMUSG00000041124	Msantd4	8430410K20Rik|Mysantd4	Myb/SANT-like DNA-binding domain containing 4 with coiled-coils	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-45741780-2	chr19	45741680	45741880	+	788.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166362, intron 2 of 4)	intron (NM_001166362, intron 2 of 4)	1104.0	NM_001166361	14179.0	Mm.4012	NM_010205	ENSMUSG00000025219	Fgf8	Aigf|Fgf-8	fibroblast growth factor 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67043364-4	chr10	67043232	67043432	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178606, intron 2 of 7)	intron (NM_178606, intron 2 of 7)	38257.0	NR_110511	102634101.0	Mm.445258	NR_110511	ENSMUSG00000112925	Gm31763	-	predicted gene, 31763	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-37957395-4	chr19	37957283	37957483	+	934.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302140, intron 21 of 53)	L1MC4|LINE|L1	86194.0	NM_001099634	226101.0	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-35280075-2	chr9	35279975	35280175	+	760.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1030.0	NR_040715	71133.0	Mm.158577	NR_040715	ENSMUSG00000111746	4933422A05Rik	-	RIKEN cDNA 4933422A05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-9751670-4	chr3	9751568	9751768	+	900.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053182, intron 2 of 7)	intron (NM_053182, intron 2 of 7)	82011.0	NM_053182	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-53342064-2	chr18	53341964	53342164	+	615.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029394, intron 3 of 6)	intron (NM_029394, intron 3 of 6)	75943.0	NM_008908	19038.0	Mm.4587	NM_008908	ENSMUSG00000024538	Ppic	CyP-20c	peptidylprolyl isomerase C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-66729110-4	chr15	66729007	66729207	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009375, intron 26 of 47)	intron (NM_009375, intron 26 of 47)	58337.0	NM_009375	21819.0	Mm.441333	NM_009375	ENSMUSG00000053469	Tg	Tgn|cog	thyroglobulin	protein-coding	4.11997149466932	3.69905907382085	3.74839373006379	4.54914281893642	3.55428033963023	5.03245719579239	4.20364146238211	4.29893779869823	0.377372768754977	0.424880891364481	0.901293602726532
Merged-chr3-40523491-4	chr3	40523382	40523582	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040445)	promoter-TSS (NR_040445)	-570.0	NR_040445	100040882.0	Mm.272869	NR_040445	ENSMUSG00000037884	1700017G19Rik	-	RIKEN cDNA 1700017G19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-75616488-4	chr15	75616323	75616523	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011759)	promoter-TSS (NM_011759)	-261.0	NM_001044718	22701.0	Mm.87210	NM_011759	ENSMUSG00000047003	Zfp41	CTfin92|Zfp-41	zinc finger protein 41	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-131921192-3	chr4	131921078	131921278	+	992.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001201367)	promoter-TSS (NM_001201367)	-593.0	NM_001201367	623230.0	Mm.421179	NM_001201367	ENSMUSG00000070720	Tmem200b	EG623230	transmembrane protein 200B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85467148-4	chr12	85467064	85467264	+	977.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6726.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-37518356-1	chr18	37518256	37518456	+	674.0	f0_balb.idr	promoter-TSS (NM_053147)	promoter-TSS (NM_053147)	3.0	NM_053147	93893.0	Mm.348054	NM_053147	ENSMUSG00000073591	Pcdhb22	Pcdhb15|PcdhbV	protocadherin beta 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-169442892-2	chr1	169442792	169442992	+	636.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	88572.0	NM_023284	66977.0	Mm.151315	NM_023284	ENSMUSG00000026683	Nuf2	2410003C07Rik|AU044112|C85691|Cdca1|NUF2R	NUF2, NDC80 kinetochore complex component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-30972103-4	chr16	30972027	30972227	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198626, intron 3 of 3)	intron (NM_198626, intron 3 of 3)	109305.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	4.9828039455321	3.63700634462223	4.27695556417891	3.66175689965418	3.83018892359311	4.00501063907469	4.07847154247589	2.84236745965259	-0.690324996651028	0.189252368614667	0.667555616405381
Merged-chr5-136087038-4	chr5	136086887	136087087	+	842.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039103, intron 1 of 19)	PB1D7|SINE|Alu	3071.0	NM_001039103	54153.0	Mm.290655	NM_133914	ENSMUSG00000004952	Rasa4	AA793972|AW112107|BB079060|CAPRI|GAPL	RAS p21 protein activator 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-19063572-4	chr10	19063486	19063686	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	T-rich|Low_complexity|Low_complexity	-48176.0	NM_009397	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-159232206-4	chr1	159232106	159232306	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360878)	promoter-TSS (NM_001360878)	6.0	NM_011931	26374.0	Mm.328135	NM_011931	ENSMUSG00000040782	Cop1	AI316802|C80879|Rfwd2	COP1, E3 ubiquitin ligase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-83737525-3	chr8	83737385	83737585	+	699.43335	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011925, intron 1 of 19)	B3|SINE|B2	3826.0	NM_001163029	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	2.57654505971288	3.20374789678165	1.69037911815639	2.52854965117275	2.20471773215356	2.59864323136874	2.38972094803075	2.03353073855644	-0.622919047096239	0.453707838994912	0.919120493489568
Merged-chr6-136835648-3	chr6	136835581	136835781	+	773.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039558)	promoter-TSS (NM_001039558)	-231.0	NM_001039558	654818.0	Mm.386899	NM_001039558	ENSMUSG00000043298	Smco3	C030030A07Rik	single-pass membrane protein with coiled-coil domains 3	protein-coding	1.68340762815467	3.77972028504331	3.20297635514643	1.5111665603395	3.27625837784216	3.67053296683525	3.55072156649694	3.29480656179598	0.901046639695748	0.24782306526907	0.747080687713142
Merged-chr17-25474721-4	chr17	25474565	25474765	+	784.841675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027951, exon 4 of 6)	exon (NM_027951, exon 4 of 6)	3075.0	NM_027951	71840.0	Mm.282330	NM_027951	ENSMUSG00000024175	Tekt4	1700010L19Rik	tektin 4	protein-coding	1.2034229540392	1.5170511254825	1.46879434676015	2.02997924016377	1.63757469218603	2.08613607684052	1.06021250812283	2.12887211294338	0.62040335555851	0.585696277988251	0.967449368090758
Merged-chr9-118811443-2	chr9	118811343	118811543	+	787.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 4 of 13)	intron (NM_001113514, intron 4 of 13)	99751.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115142693-2	chr11	115142593	115142793	+	681.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163753, intron 1 of 8)	intron (NM_001163753, intron 1 of 8)	-8701.0	NM_145634	246746.0	Mm.277387	NM_145634	ENSMUSG00000047798	Cd300lf	CLIM1|CLM-1|CLM1|Digr2|F730004D16Rik|IREM1|IgSF13|LMIR3|Pigr3	CD300 molecule like family member F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111592646-4	chr12	111592530	111592730	+	971.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_022801, exon 2 of 16)	exon (NM_022801, exon 2 of 16)	18120.0	NM_022801	17169.0	Mm.260504	NM_021516	ENSMUSG00000007411	Mark3	1600015G02Rik|A430080F22Rik|C-TAK1|ETK-1|ETK1|Emk2|MPK10	MAP/microtubule affinity regulating kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-38049853-3	chr1	38049769	38049969	+	677.477783	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198303, intron 21 of 23)	intron (NM_198303, intron 21 of 23)	51859.0	NM_198303	226982.0	Mm.260943	NM_198303	ENSMUSG00000026083	Eif5b	A030003E17Rik|BC018347|IF2	eukaryotic translation initiation factor 5B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-181538396-1	chr1	181538296	181538496	+	576.0	f0_balb.idr	Intergenic	Intergenic	-26945.0	NM_207280	403180.0	Mm.220754	NM_207280	ENSMUSG00000050625	Ccdc121	6530421E24Rik|Gm755	coiled-coil domain containing 121	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-139007709-4	chr1	139007617	139007817	+	743.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181347, intron 1 of 20)	intron (NM_181347, intron 1 of 20)	30060.0	NR_108103	78229.0	Mm.437838	NR_108103	ENSMUSG00000104900	4930596I21Rik	-	RIKEN cDNA 4930596I21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-96328662-4	chr10	96328549	96328749	+	985.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	102442.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129130417-2	chr2	129130317	129130517	+	772.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_025395, exon 3 of 4)	exon (NM_025395, exon 3 of 4)	717.0	NM_025395	66170.0	Mm.40621	NM_025395	ENSMUSG00000037938	Chchd5	1110027L01Rik|AW045710	coiled-coil-helix-coiled-coil-helix domain containing 5	protein-coding	0.0820236557565135	0.100881280803242	0.0947206611496341	0.822307190628711	0.576878535123565	0.102267822478819	0.0960808067589956	0.642379067294398	0.332290786016458	0.878453275673055	1
Merged-chr4-63402522-8	chr4	63402375	63402575	+	993.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045514, intron 1 of 21)	intron (NM_001045514, intron 1 of 21)	970.0	NM_001045514	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-82945652-2	chr5	82945552	82945752	+	643.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-146587.0	NR_035415	100316803.0		NR_035415	ENSMUSG00000080586	Mir1187	Mirn1187|mir-1187|mmu-mir-1187	microRNA 1187	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-12431098-2	chr19	12430998	12431198	+	978.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_019540, exon 2 of 2)	3' UTR (NM_019540, exon 2 of 2)	3193.0	NM_019540	56093.0	Mm.285849	NM_019540	ENSMUSG00000040065	Pfpl	Epcs5|Epcs50	pore forming protein-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-68269827-2	chr15	68269728	68269928	+	762.366699	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-10972.0	NM_198644	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	-0.108083220453252	-0.0939637858465959	-0.0986026028584201	0.189653179389288	0.260086707958321	0.508047498492318	0.0758750603770362	-0.101549670419392	2.06550138712346	0.352538875751655	1
Merged-chr12-85111482-4	chr12	85111397	85111597	+	958.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030225, intron 1 of 14)	intron (NM_030225, intron 1 of 14)	664.0	NM_030225	78920.0	Mm.296221	NM_030225	ENSMUSG00000004789	Dlst	1600017E01Rik|4632413C10Rik|4930529O08Rik|DLTS	dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-101806343-4	chr3	101806252	101806452	+	970.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29871.0	NM_172295	242125.0	Mm.32900	NM_172295	ENSMUSG00000044313	Mab21l3	-	mab-21-like 3 (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116435574-2	chr11	116435482	116435682	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_176902, intron 2 of 2)	intron (NM_176902, intron 2 of 2)	1369.0	NR_003376	664849.0	Mm.258466	NR_003376		Gm7367	EG664849	1110014K08Rik pseudogene	pseudo	-0.872916097538603	-0.858076750212072	0.212271930224195	-0.866682797913291	-0.871978848638189	-0.856861994422903	-0.861959313721536	-0.866035833892092	-3.81964142728853	0.171121984527918	1
Merged-chr2-152821209-1	chr2	152821109	152821309	+	588.0	f0_balb.idr	intron (NM_009743, intron 2 of 2)	intron (NM_009743, intron 2 of 2)	7280.0	NR_149254	12048.0	Mm.238213	NM_009743	ENSMUSG00000007659	Bcl2l1	Bcl(X)L|Bcl-XL|Bcl2l|BclX|bcl-x|bcl2-L-1	BCL2-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-121711063-4	chr5	121710962	121711162	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009125)	promoter-TSS (NM_009125)	-547.0	NM_009125	20239.0	Mm.260900	NM_009125	ENSMUSG00000042605	Atxn2	9630045M23Rik|ATX2|AW544490|Sca2	ataxin 2	protein-coding	-1.50682290038489	-1.31787766594575	-1.48393289872978	-1.33595151133619	-1.50451949613502	-1.31572733451463	-1.48168657417364	-1.49062483785939	-0.740464490307937	0.815857097700362	1
Merged-chr14-8728337-2	chr14	8728237	8728437	+	561.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61947.0	NR_045968	74859.0	Mm.84041	NR_045968	ENSMUSG00000097898	4930455B14Rik	1700027C12Rik	RIKEN cDNA 4930455B14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-5152076-2	chr11	5151980	5152180	+	615.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_080595, intron 1 of 14)	CpG	142.0	NM_080595	140703.0	Mm.840	NM_080595	ENSMUSG00000034164	Emid1	AW122071|CO-5|Emu1	EMI domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-64913091-1	chr12	64912991	64913191	+	765.0	f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-4820.0	NM_001025605	217648.0	Mm.341586	NM_001025605	ENSMUSG00000047227	Gm527	-	predicted gene 527	protein-coding	-1.27480050717774	-0.604729833679879	-1.25573295904267	-1.26493563944758	-1.27428069156472	-1.24210192204986	-1.25319678955844	-1.26328836405502	-2.6632876257018	0.439827081912762	1
Merged-chr11-115743117-4	chr11	115743013	115743213	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22320.0	NM_028014	71947.0	Mm.23168	NM_028014	ENSMUSG00000020747	Tmem94	2310067B10Rik|Kiaa0195|mKIAA0195	transmembrane protein 94	protein-coding	0.595739604401202	0.9649858927231	0.518594225029953	0.33373585647335	0.714964454266598	0.976335860596511	0.340788574167785	0.334694852816763	-0.00549164802550407	0.997524014927661	1
Merged-chr6-38874589-2	chr6	38874489	38874689	+	921.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010433, intron 1 of 14)	intron (NM_010433, intron 1 of 14)	1601.0	NM_010433	15258.0	Mm.23790	NM_010433	ENSMUSG00000061436	Hipk2	1110014O20Rik|B230339E18Rik|Stank	homeodomain interacting protein kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-116081978-4	chr3	116081914	116082114	+	996.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1A|DNA|hAT-Charlie	47674.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-112987700-4	chr13	112987619	112987819	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081062)	promoter-TSS (NM_001081062)	-83.0	NM_001081062	218630.0	Mm.25457	NM_001081062	ENSMUSG00000042417	Ccno	C86987|Ccnu|E130318K11|UDG2|Ung2	cyclin O	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59615871-4	chr15	59615937	59616137	+	998.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32617.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-79301599-4	chr14	79301512	79301712	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025427)	promoter-TSS (NM_025427)	23.0	NM_025427	66214.0	Mm.29811	NM_025427	ENSMUSG00000022018	Rgcc	1190002H23Rik|Rgc-32|Rgc32	regulator of cell cycle	protein-coding	4.73276503805244	5.05236091149315	3.58016779240135	5.5619208324158	4.46020270031953	4.54501936545645	5.43088941308736	5.17614447816753	0.0707062644713217	0.86863824376788	0.998431161219273
Merged-chr19-5794177-4	chr19	5794050	5794250	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	1831.0	NR_144621	109146451.0		NR_144621		Mascrna	-	Malat1-associated small cytoplasmic RNA	scRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124445676-3	chr6	124445574	124445774	+	863.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346656, intron 12 of 17)	intron (NM_001346656, intron 12 of 17)	17070.0	NM_001346656	232370.0	Mm.193701	NM_153508	ENSMUSG00000008153	Clstn3	CSTN3|Cs3|Cst-3|alc-beta	calsyntenin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-46956722-2	chr18	46956622	46956822	+	601.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2154.0	NM_178377	69456.0	Mm.210734	NM_178377	ENSMUSG00000042705	Commd10	2310003A05Rik|AU019438|DRWMS2|Tg(Vav1-icre)A2Kio|Vav-cre|Vav-iCre|Vav1-Cre|VavCre	COMM domain containing 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-35982508-6	chr16	35982291	35982491	+	857.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008465)	promoter-TSS (NM_008465)	-972.0	NM_008465	16646.0	Mm.3991	NM_008465	ENSMUSG00000022905	Kpna1	AW494490|IPOA5|NPI1|Rch2|mSRP1	karyopherin (importin) alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-95685786-2	chr4	95685666	95685866	+	597.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_029347, intron 5 of 10)	C-rich|Low_complexity|Low_complexity	106345.0	NM_029347	75578.0	Mm.276098	NM_029347	ENSMUSG00000028573	Fggy	2310009E04Rik	FGGY carbohydrate kinase domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-130294829-1	chr2	130294729	130294929	+	1000.0	f1_c57bl6.idr	Intergenic	CpG	-1110.0	NM_001110513	228598.0	Mm.32582	NM_152993	ENSMUSG00000053552	Ebf4	Ebf3|O/E-4|Olf-1	early B cell factor 4	protein-coding	2.70857363157555	2.50139491606581	1.43820953253216	3.47326906198946	2.24022491414299	2.20456699016116	2.56108073725979	2.78503160862559	-0.524752118959983	0.539821099468817	0.954403851908463
Merged-chr7-24441998-4	chr7	24441883	24442083	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199013, intron 1 of 2)	intron (NM_199013, intron 1 of 2)	3699.0	NM_199013	210145.0	Mm.33811	NM_199013	ENSMUSG00000062028	Irgc1	F630044M05Rik|Gm1102|Gm474|Ifgge|Iigp5|Irgc	immunity-related GTPase family, cinema 1	protein-coding	3.7238204635953	3.91053374919325	3.33850515991711	3.80305165292215	2.42556196006543	3.03906637547463	3.05676140034208	3.50267555387595	-1.03199220985034	0.0713652043022116	0.402494384778095
Merged-chr8-111734372-1	chr8	111734272	111734472	+	640.0	f1_c57bl6.idr	intron (NM_009954, intron 1 of 6)	intron (NM_009954, intron 1 of 6)	-2236.0	NM_001198839	12927.0	Mm.3758	NM_009954	ENSMUSG00000031955	Bcar1	AI385681|Cas|Crkas	breast cancer anti-estrogen resistance 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-17567994-3	chr10	17567865	17568065	+	699.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-155263.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	-0.655833402847583	-0.64622808411415	-0.649388722047393	-0.138456070254561	-0.515280022566445	-0.645513810079699	-0.32841165235754	-0.651394302897171	-0.356731640080943	0.896128101376553	1
Merged-chr5-24908310-4	chr5	24908215	24908415	+	953.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310480, intron 3 of 13)	CpG	194.0	NM_001170556	108099.0	Mm.33649	NM_145401	ENSMUSG00000028944	Prkag2	2410051C13Rik|AAKG|AAKG2|AI854673|H91620p|WPWS	protein kinase, AMP-activated, gamma 2 non-catalytic subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-28680044-5	chr19	28679928	28680128	+	984.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001305671)	promoter-TSS (NM_001305671)	49.0	NM_001305671	226075.0	Mm.223508	NM_175459	ENSMUSG00000052942	Glis3	4833409N03Rik|E330013K21Rik	GLIS family zinc finger 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-94353492-2	chr11	94353392	94353592	+	892.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029600, intron 26 of 30)	intron (NM_029600, intron 26 of 30)	25491.0	NM_146024	71452.0	Mm.141054	NM_027799	ENSMUSG00000020864	Ankrd40	1110011C06Rik|5530600A18Rik|Gcap15	ankyrin repeat domain 40	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-53235450-1	chr15	53235350	53235550	+	894.0	f0_balb.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	110733.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118853471-2	chr9	118853371	118853571	+	578.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 9 of 13)	intron (NM_001113514, intron 9 of 13)	-73065.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-35917490-2	chr9	35917390	35917590	+	824.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3_Mus|LINE|L1	-67610.0	NR_030730	100041605.0	Mm.99350	NR_030730	ENSMUSG00000098705	Gm3428	-	predicted gene 3428	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-65179231-4	chr1	65179136	65179336	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010497)	promoter-TSS (NM_010497)	-94.0	NM_010497	15926.0	Mm.9925	NM_010497	ENSMUSG00000025950	Idh1	AI314845|AI788952|E030024J03Rik|Id-1|Idh-1|Idpc	isocitrate dehydrogenase 1 (NADP+), soluble	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-33434375-2	chr5	33434268	33434468	+	670.5	f0_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011320)	promoter-TSS (NM_011320)	-278.0	NM_011320	672284.0		NM_011320	ENSMUSG00000029112	Nkx1-1	Nkx-1.1|Sax2	NK1 homeobox 1	protein-coding	0.12782361356652	-0.878107120555046	-0.886205853976217	-0.889414343727905	-0.89398813892315	-0.874922366149326	-0.885292864019612	-0.88885216186326	-3.41991773933119	0.263902342729584	1
Merged-chr11-102297129-4	chr11	102297026	102297226	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001098837)	promoter-TSS (NM_001098837)	-497.0	NM_001098837	217218.0	Mm.390381	NM_001098836	ENSMUSG00000059995	Atxn7l3	E030022H21Rik	ataxin 7-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-114697113-3	chr5	114697013	114697213	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-6178.0	NM_019821	56356.0	Mm.275766	NM_019821	ENSMUSG00000011884	Gltp	1110001F24Rik|C76925|C77564	glycolipid transfer protein	protein-coding	4.93909017805197	4.365667467955	4.77574757956992	5.17187627492181	5.43747784634655	4.96284721963101	5.42654068292382	5.86222425059651	0.717745925555802	0.0278084328245444	0.225195509290189
Merged-chr13-98027967-1	chr13	98027867	98028067	+	812.799988	f0_balb.idr	intron (NM_012026, intron 9 of 35)	intron (NM_012026, intron 9 of 35)	178198.0	NM_012026	110596.0	Mm.252718	NM_012026	ENSMUSG00000021662	Arhgef28	9230110L08Rik|AI323540|D13Bwg1089e|RIP2|Rgnef|RhoGEF|Rhoip2|p190RhoGEF	Rho guanine nucleotide exchange factor (GEF) 28	protein-coding	0.136620776670237	0.159362696028863	0.874312680556566	0.146231807520194	0.138057073850156	0.701713556683165	0.887556787627082	0.14723730217738	0.786628880078873	0.708596148180415	1
Merged-chr5-100872168-4	chr5	100872071	100872271	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172715, intron 3 of 12)	intron (NM_172715, intron 3 of 12)	25942.0	NM_172715	231510.0	Mm.271911	NM_172715	ENSMUSG00000029314	Gpat3	1-AGPAT|1-AGPAT 9|4933407I02Rik|4933408F15|A230097K15Rik|Agpat9|GPAT-3|mGPAT3	glycerol-3-phosphate acyltransferase 3	protein-coding	5.18518099957716	4.63556216028459	5.10035522020355	4.68854291802666	4.7231790282791	3.91109245016481	4.41451863723792	3.89777255719025	-0.792292872112719	0.0391544178740331	0.281864823391589
Merged-chr16-20642404-2	chr16	20642304	20642504	+	568.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_139293, intron 12 of 18)	intron (NM_139293, intron 12 of 18)	-9248.0	NR_027485	21762.0	Mm.243234	NM_134101	ENSMUSG00000006998	Psmd2	9430095H01Rik|AA407121|TEG-190|Tex190	proteasome (prosome, macropain) 26S subunit, non-ATPase, 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-39192479-4	chr16	39192410	39192610	+	711.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3560.0	NR_153800	102640746.0		NR_153800		Gm36742	-	predicted gene, 36742	ncRNA	1.83797360723605	1.17200597576745	3.48673449045413	2.22224088326116	1.70129920761828	1.93989123504394	2.72861970260952	1.10689052080415	-0.977098313471447	0.361018641951213	0.856837565551048
Merged-chr10-128545990-2	chr10	128545890	128546090	+	734.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_134003, intron 2 of 2)	intron (NM_134003, intron 2 of 2)	1754.0	NM_134003	103284.0	Mm.68289	NM_134003	ENSMUSG00000039810	Zc3h10	AI790326	zinc finger CCCH type containing 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47499170-4	chr17	47499045	47499245	+	850.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356290, intron 2 of 7)	RMER6A|LTR|ERVK	3146.0	NM_001356290	63856.0	Mm.275901	NM_022015	ENSMUSG00000023980	Taf8	AW260255|Tbn	TATA-box binding protein associated factor 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-55967368-2	chr16	55967268	55967468	+	721.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_024218, intron 3 of 5)	intron (NM_024218, intron 3 of 5)	1093.0	NM_024218	68193.0	Mm.29221	NM_024218	ENSMUSG00000098274	Rpl24	0610008L05Rik|Bst	ribosomal protein L24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-107762479-2	chr13	107762379	107762579	+	713.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 5 of 14)	intron (NM_145456, intron 5 of 14)	75082.0	NR_045900	72257.0	Mm.234155	NR_045900	ENSMUSG00000102000	1700006H21Rik	-	RIKEN cDNA 1700006H21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-24432216-3	chr19	24432105	24432305	+	917.1555789999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008846, intron 3 of 14)	intron (NM_008846, intron 3 of 14)	45269.0	NM_026520	68034.0	Mm.440181	NM_026520	ENSMUSG00000074922	Fam122a	2410124L17Rik|2900009I07Rik|Gm9849	family with sequence similarity 122, member A	protein-coding	2.43476838676232	2.74104837759172	3.11444427909158	2.66054338920966	1.27543486687945	1.68004307584803	2.19008678021167	2.25565364481227	-1.92512960085201	0.0294571251328386	0.234347758018409
Merged-chr6-124481123-2	chr6	124481023	124481223	+	629.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11990.0	NM_181344	232371.0	Mm.132974	NM_181344	ENSMUSG00000038527	C1rl	C1r-LP|C1rl1|C1rlp	complement component 1, r subcomponent-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125380768-2	chr6	125380668	125380868	+	969.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198604)	promoter-TSS (NM_198604)	-264.0	NM_198604	213522.0	Mm.333396	NM_198604	ENSMUSG00000038167	Plekhg6	BC026778|Gm155	pleckstrin homology domain containing, family G (with RhoGef domain) member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-65260267-3	chr5	65260162	65260362	+	891.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001359879)	TTS (NM_001359879)	60566.0	NM_153391	213081.0	Mm.127550	NM_153391	ENSMUSG00000037890	Wdr19	C330027H04Rik|D330023L08Rik|DYF2|Ift144|PWDMP|mKIAA1638	WD repeat domain 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-109380852-4	chr11	109380741	109380941	+	902.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001359034)	TTS (NM_001359034)	-17187.0	NR_038097	100036768.0	Mm.467767	NR_038097	ENSMUSG00000056687	Gm11696	-	predicted gene 11696	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-55327724-3	chr4	55327614	55327814	+	699.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22328.0	NM_009011	19359.0	Mm.196846	NM_009011	ENSMUSG00000028426	Rad23b	0610007D13Rik|AV001138|HR23B|mHR23B|p58	RAD23 homolog B, nucleotide excision repair protein	protein-coding	-0.816197293366231	-0.80724490921107	-0.810191369837912	-0.396342611380217	-0.345796718968459	-0.804586221216491	-0.809543431923338	-0.812059261816221	0.217041845743973	0.943328585514677	1
Merged-chr11-116647945-3	chr11	116647850	116648050	+	903.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030206, intron 3 of 3)	intron (NM_030206, intron 3 of 3)	6363.0	NM_030206	114886.0	Mm.34598	NM_030206	ENSMUSG00000020810	Cygb	3110001K20Rik|HGb|Staap	cytoglobin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-77249943-3	chr2	77249848	77250048	+	677.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175465, intron 1 of 17)	intron (NM_175465, intron 1 of 17)	30644.0	NM_175465	228071.0	Mm.27120	NM_175465	ENSMUSG00000042272	Sestd1	1500031J16Rik|A930010O20|Solo/Trio8	SEC14 and spectrin domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-120174448-6	chr6	120174342	120174542	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016718, intron 1 of 3)	intron (NM_016718, intron 1 of 3)	-19381.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-24053523-2	chr5	24053421	24053621	+	630.666626	f0_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22831.0	NM_053090	84652.0	Mm.304976	NM_053090	ENSMUSG00000028995	Fam126a	AB030242|Drctnnb1a	family with sequence similarity 126, member A	protein-coding	2.855875047177	3.13095429593654	2.47527358647943	2.78843271380012	1.29913610197275	2.30756538376305	1.65975684630208	2.41605401692449	-1.81053474968523	0.0367774425755415	0.272305311364167
Merged-chr12-32774889-4	chr12	32774806	32775006	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MEc|LINE|L1	-45429.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	3.71198155264343	3.86607015193158	3.28356029169516	3.96438002421138	3.96044585072006	4.59338200819782	3.84195903158352	3.20362780707074	0.361062023614663	0.477427384842402	0.927980290875356
Merged-chr13-56593393-4	chr13	56593306	56593506	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16180.0	NM_009369	21810.0	Mm.14455	NM_009369	ENSMUSG00000035493	Tgfbi	68kDa|AI181842|AI747162|Beta-ig|big-h3	transforming growth factor, beta induced	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-117036503-4	chr13	117036407	117036607	+	951.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10991.0	NM_001081009	52552.0	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-94162681-4	chr13	94162575	94162775	+	986.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172589, intron 2 of 3)	MTD|LTR|ERVL-MaLR	104879.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-111994000-4	chr9	111993892	111994092	+	793.733337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	124719.0	NR_029823	723815.0		NR_029823	ENSMUSG00000065441	Mir128-2	Mirn128-2|Mirn128b|mir-128-2|mir-128b	microRNA 128-2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-20717112-3	chr18	20717010	20717210	+	870.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019737, intron 3 of 8)	MER5A|DNA|hAT-Charlie	29294.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-128613968-2	chr1	128613882	128614082	+	878.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21683.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	2.98862801355831	2.23364955591828	3.16689054668855	2.25151265793616	2.51415255976785	2.25090666115821	3.6773862910473	1.69371292114119	0.0658762875214139	0.936734279398907	0.998431161219273
Merged-chr19-47925824-1	chr19	47925724	47925924	+	674.0	f1_c57bl6.idr	Intergenic	Intergenic	-6525.0	NM_001001738	414801.0	Mm.29457	NM_001001738	ENSMUSG00000044948	Itprip	4833424O12Rik|DANGER	inositol 1,4,5-triphosphate receptor interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-98710563-2	chr15	98710463	98710663	+	939.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153518, intron 2 of 7)	B2_Mm2|SINE|B2	2336.0	NM_153518	105833.0	Mm.26205	NM_153518	ENSMUSG00000003354	Ccdc65	4933417K04Rik|AI428139|AU020178|NYD-SP28	coiled-coil domain containing 65	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-29767160-2	chr6	29767060	29767260	+	740.583374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-1283.0	NM_021414	74340.0	Mm.210899	NM_021414	ENSMUSG00000029772	Ahcyl2	4631427C17Rik|AI227036|Adohcyase3|mKIAA0828	S-adenosylhomocysteine hydrolase-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-117494731-2	chr4	117494631	117494831	+	830.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025739, intron 1 of 14)	CpG	2321.0	NM_025739	66743.0	Mm.318331	NM_025739	ENSMUSG00000028677	Rnf220	4732477A13|4931406I20Rik|5730503K05Rik|AV302541	ring finger protein 220	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-25577465-2	chr2	25577365	25577565	+	598.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001005424, exon 1 of 1)	exon (NM_001005424, exon 1 of 1)	-2594.0	NM_029293	75454.0	Mm.458079	NM_029293	ENSMUSG00000036504	Phpt1	1700008C22Rik|PHP|Php14	phosphohistidine phosphatase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-138740349-4	chr5	138740244	138740444	+	948.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-14737.0	NM_030565	80752.0	Mm.320355	NM_030565	ENSMUSG00000025854	Fam20c	C76981|DMP-4|DMP4|GEF-CK|mKIAA4081	family with sequence similarity 20, member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-58702486-1	chr16	58702386	58702586	+	544.0	f0_balb.idr	Intergenic	Intergenic	16238.0	NM_001162955	71223.0	Mm.359970	NM_001162955	ENSMUSG00000047293	Gpr15	4933439K08Rik	G protein-coupled receptor 15	protein-coding	0.101068998653692	0.674327824117506	0.11733673950248	0.111264122207175	0.53670933969501	0.126881971994548	0.119063626302016	1.16083698599018	1.71866817655666	0.411170378041736	1
Merged-chr2-33468568-4	chr2	33468483	33468683	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027947)	promoter-TSS (NM_027947)	-51.0	NM_001355612	71834.0	Mm.44186	NM_027947	ENSMUSG00000026788	Zbtb43	1700010E06Rik|Zfp297b|mKIAA0414	zinc finger and BTB domain containing 43	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124712165-4	chr6	124712082	124712282	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013536)	promoter-TSS (NM_013536)	-4.0	NM_013536	14791.0	Mm.6390	NM_013536	ENSMUSG00000004268	Emg1	C2f|Grcc2f	EMG1 N1-specific pseudouridine methyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119387620-2	chr11	119387520	119387720	+	742.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVB4_1C-LTR_Mm|LTR|ERVK	-2852.0	NR_035453	100316690.0		NR_035453	ENSMUSG00000088015	Mir1932	mir-1932|mmu-mir-1932	microRNA 1932	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-12973283-4	chr18	12973162	12973362	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008378, intron 1 of 10)	(CTCGG)n|Simple_repeat|Simple_repeat	-1198.0	NM_001357396	16210.0	Mm.8154	NM_008378	ENSMUSG00000024423	Impact	E430016J11Rik	impact, RWD domain protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-58509794-4	chr16	58509704	58509904	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357433, intron 1 of 10)	intron (NM_001357433, intron 1 of 10)	13622.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-16920735-3	chr12	16920634	16920834	+	727.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009072, intron 1 of 32)	L2a|LINE|L2	25756.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	2.70064811039987	3.03200680261309	3.03663886199319	3.55901649848795	2.72342696044777	3.05419536279887	2.83576212056251	3.63391823418892	-0.00804293962767163	0.989966858759785	0.998431161219273
Merged-chr4-142073548-2	chr4	142073448	142073648	+	662.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145402, intron 1 of 2)	L1MD3|LINE|L1	-10750.0	NR_027137	100038693.0	Mm.402714	NR_027137	ENSMUSG00000073728	Tmem51os1	Gm10565|Tmem51as1	Tmem51 opposite strand 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81133102-2	chr10	81133002	81133202	+	761.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3169.0	NM_010731	16969.0	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-87840605-4	chr6	87840489	87840689	+	817.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1830.0	NM_133934	57905.0	Mm.241546	NM_133934	ENSMUSG00000030056	Isy1	5830446M03Rik|AI181014|AU020769	ISY1 splicing factor homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-48009223-1	chr8	48009123	48009323	+	628.5	f0_balb.idr	Intergenic	RCHARR1|DNA|hAT-Charlie	-18672.0	NM_133791	52357.0	Mm.235074	NM_133791	ENSMUSG00000031563	Wwc2	5330431C14Rik|AU022508|C85457|D8Ertd594e	WW, C2 and coiled-coil domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-46955590-1	chr14	46955490	46955690	+	569.5	f1_c57bl6.idr	promoter-TSS (NR_105813)	promoter-TSS (NR_105813)	-662.0	NR_105813	102465206.0		NR_105813	ENSMUSG00000099036	Mir378c	Gm27930|mmu-mir-378c	microRNA 378c	ncRNA	3.22061492489225	2.5721928694414	2.59437895944645	1.85171342119788	2.31248539573855	2.16384971602747	2.24843942873942	2.18047442531167	-0.949907193557905	0.24690622321885	0.746081649489815
Merged-chr4-62561451-4	chr4	62561340	62561540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019492, intron 1 of 19)	intron (NM_019492, intron 1 of 19)	1593.0	NM_019492	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-116255928-2	chr3	116255828	116256028	+	620.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2444.0	NM_022427	64378.0	Mm.40025	NM_022427	ENSMUSG00000068696	Gpr88	AW061286|Strg	G-protein coupled receptor 88	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-68468174-4	chr11	68468059	68468259	+	987.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177320, intron 1 of 18)	intron (NM_177320, intron 1 of 18)	-34860.0	NM_001004435	104709.0	Mm.234573	NM_001004435	ENSMUSG00000046207	Pik3r6	BB220380|p84|p84 PIKAP|p87(PIKAP)|p87PIKAP	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-100778486-4	chr12	100778401	100778601	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361020)	promoter-TSS (NM_001361020)	-556.0	NM_001361023	217830.0	Mm.218590	NM_145448	ENSMUSG00000021185	Dglucy	9030617O03Rik	D-glutamate cyclase	protein-coding	3.7490463584185	3.50643561053812	2.65933741400717	2.26321550586147	2.90184447272628	1.9900245318809	3.69585785655483	3.64681436408302	0.0619470101532818	0.931712382666689	0.998431161219273
Merged-chr16-22095958-4	chr16	22095874	22096074	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183029, intron 2 of 15)	ORR1F|LTR|ERVL-MaLR	67325.0	NM_183029	319765.0	Mm.489442	NM_183029	ENSMUSG00000033581	Igf2bp2	C330012H03Rik|IMP-2|Imp2|Neilsen	insulin-like growth factor 2 mRNA binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70067574-2	chr14	70067474	70067674	+	655.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9871.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-73513283-3	chr13	73513188	73513388	+	797.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145376, intron 12 of 13)	intron (NM_145376, intron 12 of 13)	-23459.0	NM_010020	13162.0	Mm.41993	NM_010020	ENSMUSG00000021609	Slc6a3	DAT|Dat1	solute carrier family 6 (neurotransmitter transporter, dopamine), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-95133109-2	chr16	95133009	95133209	+	787.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-124449.0	NM_001271693	16516.0	Mm.272239	NM_019664	ENSMUSG00000062609	Kcnj15	4930414N08Rik|AI182284|AI267127|IRKK|Kir4.2	potassium inwardly-rectifying channel, subfamily J, member 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-12982334-1	chr7	12982234	12982434	+	543.0	f1_c57bl6.idr	exon (NM_001168561, exon 5 of 5)	exon (NM_001168561, exon 5 of 5)	4486.0	NM_001168561	269870.0	Mm.62083	NM_175558	ENSMUSG00000033961	Zfp446	A630035I11Rik|A930031C22|AA120513|AV306632	zinc finger protein 446	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118699377-2	chr9	118699277	118699477	+	597.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 15 of 27)	intron (NM_133721, intron 15 of 27)	-12315.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-92008469-4	chr2	92008361	92008561	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011957, intron 1 of 11)	CpG	15709.0	NM_011957	26427.0	Mm.10353	NM_011957	ENSMUSG00000027230	Creb3l1	Oasis	cAMP responsive element binding protein 3-like 1	protein-coding	5.76831071958547	5.5983076939137	5.70868994541185	5.93953996590097	5.85876348872845	5.25152564360857	5.50278205180972	5.94476023538281	-0.0960477475867972	0.713226637601111	0.998431161219273
Merged-chr5-67875378-2	chr5	67875278	67875478	+	822.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5b|LINE|L1	-27947.0	NM_001038999	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-10330386-2	chr3	10330286	10330486	+	569.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_018864, intron 1 of 8)	intron (NM_018864, intron 1 of 8)	1053.0	NM_001310433	55980.0	Mm.183042	NM_018864	ENSMUSG00000027531	Impa1	2610002K09Rik|2900059K10Rik|AI325909	inositol (myo)-1(or 4)-monophosphatase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-99432186-2	chr6	99432086	99432286	+	641.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_053202, intron 1 of 18)	B4|SINE|B4	3159.0	NM_053202	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83115507-4	chr6	83115393	83115593	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020619)	promoter-TSS (NM_020619)	-13.0	NM_020619	57377.0	Mm.28188	NM_020619	ENSMUSG00000030036	Mogs	1810017N02Rik|AI181835|Gcs1	mannosyl-oligosaccharide glucosidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120575561-2	chr11	120575461	120575661	+	715.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-2308.0	NM_011032	18453.0	Mm.16660	NM_011032	ENSMUSG00000025130	P4hb	ERp59|PDI|Pdia1|Thbp	prolyl 4-hydroxylase, beta polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95904130-2	chr3	95904030	95904230	+	558.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355750, intron 1 of 10)	intron (NM_001355750, intron 1 of 10)	555.0	NM_001355751	23831.0	Mm.489647	NM_011797	ENSMUSG00000038526	Car14	AW536446|CA-XIV|Ca14	carbonic anhydrase 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-27329533-4	chr7	27329452	27329652	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113549, intron 3 of 29)	CpG	4096.0	NM_001113549	108075.0	Mm.272251	NM_175641	ENSMUSG00000040488	Ltbp4	2310046A13Rik	latent transforming growth factor beta binding protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-27325909-4	chr7	27325810	27326010	+	902.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113549, intron 11 of 29)	intron (NM_001113549, intron 11 of 29)	7738.0	NM_001113549	108075.0	Mm.272251	NM_175641	ENSMUSG00000040488	Ltbp4	2310046A13Rik	latent transforming growth factor beta binding protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53068174-2	chr4	53068074	53068274	+	973.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 28 of 49)	intron (NM_013454, intron 28 of 49)	56294.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-135131205-4	chr1	135131110	135131310	+	993.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153383, intron 1 of 36)	intron (NR_153383, intron 1 of 36)	1365.0	NR_153383	13924.0	Mm.4450	NM_007955		Ptprv	Esp|OST|OST-PTP	protein tyrosine phosphatase, receptor type, V	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-106500173-4	chr8	106500079	106500279	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10673.0	NM_007665	12560.0	Mm.4658	NM_007665	ENSMUSG00000061048	Cdh3	AI385538|Cadp|Cdhp|P-cadherin|Pcad	cadherin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-53483887-4	chr3	53483778	53483978	+	997.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-4915.0	NM_153156	229277.0	Mm.222810	NM_153156	ENSMUSG00000027744	Stoml3	Epb7.2l|SLP3|sro	stomatin (Epb7.2)-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132353665-4	chr4	132353572	132353772	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_003270)	promoter-TSS (NR_003270)	14.0	NR_003270	399101.0	Mm.486919	NR_002904	ENSMUSG00000085241	Snhg3	Rnu17d|U17HG	small nucleolar RNA host gene 3	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-33151482-2	chr12	33151382	33151582	+	549.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028139, intron 2 of 3)	intron (NM_028139, intron 2 of 3)	3796.0	NM_028139	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-17239075-3	chr12	17238926	17239126	+	657.722229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27569.0	NM_027959	71853.0	Mm.222825	NM_027959	ENSMUSG00000020571	Pdia6	1700015E05Rik|AL023058|C77895|CaBP5|P5|Txndc7	protein disulfide isomerase associated 6	protein-coding	-1.24827205256741	-1.22224950400672	-1.07320988693484	-1.083900994418	-0.981256631507782	-1.22005754881918	-1.23007466291735	-1.23918594370409	-0.134299891302557	0.966209336597757	1
Merged-chr5-97046564-2	chr5	97046464	97046664	+	682.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_080708, intron 7 of 15)	RLTR20A4|LTR|ERVK	48875.0	NM_080708	140780.0	Mm.281490	NM_080708	ENSMUSG00000034663	Bmp2k	4933417M22Rik|AA673486|AV128808|BIKE	BMP2 inducible kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100851433-2	chr11	100851333	100851533	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113563)	promoter-TSS (NM_001113563)	-848.0	NM_001113563	20851.0	Mm.34064	NM_011489	ENSMUSG00000020919	Stat5b	-	signal transducer and activator of transcription 5B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-41019953-4	chr13	41019823	41020023	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360770, intron 3 of 4)	intron (NM_001360770, intron 3 of 4)	3673.0	NM_001360770	66154.0	Mm.30005	NM_025387	ENSMUSG00000021361	Tmem14c	1110021D01Rik|AU020193|HSPC194	transmembrane protein 14C	protein-coding	3.90231745545453	3.54070994343217	3.34533391007557	2.87372065208319	3.32860315003329	2.29390103310739	2.728965477629	3.18486430594006	-0.849168290502022	0.178948345154461	0.649697107310641
Merged-chr13-48639774-2	chr13	48639674	48639874	+	741.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14102.0	NM_001301781	218232.0	Mm.315089	NM_207232	ENSMUSG00000038042	Ptpdc1	AI843923|AW456874|Naa-1|Ptpcd1	protein tyrosine phosphatase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134632327-3	chr6	134632208	134632408	+	705.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_026345, exon 1 of 4)	5' UTR (NM_026345, exon 1 of 4)	180.0	NM_026345	67729.0	Mm.57648	NM_026345	ENSMUSG00000032718	Mansc1	9130403P13Rik	MANSC domain containing 1	protein-coding	2.62962357445792	2.63447478907834	1.71015222864644	3.20940673522047	2.11269603396763	3.06685259225663	1.72291200430013	2.8736804697538	-0.191070222174272	0.821836542875777	0.998431161219273
Merged-chr5-88561295-2	chr5	88561195	88561395	+	653.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4A|LINE|L1	-3745.0	NM_001289774	52822.0	Mm.270469	NM_027530	ENSMUSG00000029291	Rufy3	2810428M05Rik|6330416M07Rik|AW455998|AW538594|D5Bwg0860e|Ripx|Rpipx	RUN and FYVE domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-31052496-2	chr7	31052396	31052596	+	701.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_194321, intron 5 of 7)	MIR|SINE|MIR	-1042.0	NM_022007	57780.0	Mm.41770	NM_022007	ENSMUSG00000036578	Fxyd7	1110035I01Rik	FXYD domain-containing ion transport regulator 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41912467-3	chr19	41912378	41912578	+	870.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023418, intron 1 of 3)	CpG	607.0	NM_023418	18648.0	Mm.16783	NM_023418	ENSMUSG00000011752	Pgam1	2310050F24Rik|Pgam-1	phosphoglycerate mutase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69918678-2	chr11	69918578	69918778	+	777.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166589, intron 3 of 6)	intron (NM_001166589, intron 3 of 6)	1952.0	NM_001166590	276770.0	Mm.18026	NM_181582	ENSMUSG00000078812	Eif5a	AA410058|D19Wsu54e|Eif4d|Eif5a1|eIF-4D|eIF-5A|eIF-5A-1|eIF-5A1	eukaryotic translation initiation factor 5A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-49012416-4	chr6	49012304	49012504	+	720.44165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12788.0	NR_126454	75347.0	Mm.207324	NR_126454	ENSMUSG00000107656	4930563H07Rik	-	RIKEN cDNA 4930563H07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-105919758-2	chr3	105919658	105919858	+	707.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027025, intron 4 of 6)	MLT1O|LTR|ERVL-MaLR	12906.0	NM_001033780	433638.0	Mm.239081	NM_001033780	ENSMUSG00000074342	I830077J02Rik	-	RIKEN cDNA I830077J02 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-5085201-3	chr18	5085087	5085287	+	874.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347449, intron 11 of 30)	intron (NM_001347449, intron 11 of 30)	38598.0	NM_001347449	225115.0	Mm.136791	NM_153153	ENSMUSG00000024236	Svil	AU024053|B430302E16Rik	supervillin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84358035-2	chr8	84357933	84358133	+	923.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57331.0	NM_001252060	12286.0	Mm.334658	NM_007578	ENSMUSG00000034656	Cacna1a	APCA|BI|Caca1a|Cacnl1a4|Cav2.1|Ccha1a|EA2|FHM|HPCA|MHP|MHP1|SCA6|alpha1A|la|nmf352|rkr|smrl|tg	calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-124290990-1	chr8	124290890	124291090	+	798.5	f0_balb.idr	intron (NM_139272, intron 1 of 15)	intron (NM_139272, intron 1 of 15)	59596.0	NM_139272	108148.0	Mm.33808	NM_139272	ENSMUSG00000089704	Galnt2	AI480629	polypeptide N-acetylgalactosaminyltransferase 2	protein-coding	1.30954545633902	0.759297082016647	1.30755442725093	0.731288948750789	1.20181601855247	0.762775077150335	2.10343856432478	1.40276837538382	1.49921581416832	0.290278448029864	0.795360911821054
Merged-chr12-3696308-4	chr12	3696187	3696387	+	920.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162465, intron 9 of 17)	intron (NM_001162465, intron 9 of 17)	-110693.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-32536666-2	chr6	32536566	32536766	+	672.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175750, intron 1 of 31)	intron (NM_175750, intron 1 of 31)	25525.0	NR_040277	319849.0	Mm.440860	NR_040277	ENSMUSG00000086763	Plxna4os1	B230378P21Rik	plexin A4, opposite strand 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-11060572-4	chr19	11060463	11060663	+	845.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9997.0	NR_102366	107350.0	Mm.6381	NM_001177351	ENSMUSG00000075010	AW112010	-	expressed sequence AW112010	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-3008965-1	chr9	3008865	3009065	+	600.0	f1_c57bl6.idr	Intergenic	GSAT_MM|Satellite|Satellite	29778.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-37656537-3	chr9	37656446	37656646	+	861.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025289, intron 1 of 8)	intron (NM_025289, intron 1 of 8)	766.0	NM_025289	21376.0	Mm.28689	NM_025289	ENSMUSG00000011114	Tbrg1	AA408552|AA409675|Niam|Tb-5|mFLJ00213	transforming growth factor beta regulated gene 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171286595-2	chr1	171286495	171286695	+	883.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_013919, exon 2 of 13)	exon (NM_013919, exon 2 of 13)	1366.0	NM_013919	30941.0	Mm.27510	NM_013919	ENSMUSG00000053483	Usp21	ESTM28|Usp16|Usp23|W53272	ubiquitin specific peptidase 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-31298031-4	chr2	31297879	31298079	+	923.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52056.0	NM_019681	14299.0	Mm.249318	NM_019681	ENSMUSG00000062661	Ncs1	9430075O15Rik|A730032G13Rik|AI836659|Freq|Mfreq|NCS-1	neuronal calcium sensor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-31196710-2	chr5	31196610	31196810	+	599.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153680, intron 8 of 14)	intron (NM_153680, intron 8 of 14)	3406.0	NM_153680	266781.0	Mm.6118	NM_153680	ENSMUSG00000029146	Snx17	5830447M19Rik|AI790646|D5Ertd260e|b2b1625.1Clo|mKIAA0064	sorting nexin 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-17676644-4	chr10	17676538	17676738	+	742.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46590.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-72852590-2	chr16	72852490	72852690	+	554.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019413, intron 2 of 28)	intron (NM_019413, intron 2 of 28)	189441.0	NM_019413	19876.0	Mm.310772	NM_019413	ENSMUSG00000022883	Robo1	AW494633|AW742721|DUTT1|Gm310	roundabout guidance receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140842087-3	chr5	140841994	140842194	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11663.0	NM_010302	14673.0	Mm.370185	NM_010302	ENSMUSG00000000149	Gna12	AI414047|AI504261|Galpha12	guanine nucleotide binding protein, alpha 12	protein-coding	4.52892859382711	5.13509725196771	4.70617005165885	5.67565561175742	5.0931939753091	6.11416200999752	5.13042120773494	6.48372403795704	0.857647303633996	0.0223237123648024	0.193401600338936
Merged-chr2-88606943-1	chr2	88606843	88607043	+	947.0	f1_balb.idr	Intergenic	L1_Mus2|LINE|L1	15137.0	NM_146772	258768.0	Mm.377683	NM_146772	ENSMUSG00000068808	Olfr1189	MOR237-2	olfactory receptor 1189	protein-coding	1.52957244428553	1.62718639416587	1.69067840167469	0.763303885378721	0.957635243563845	0.806247910173413	2.47427081673029	0.766308297393217	0.190345172053232	0.891303864550721	0.998431161219273
Merged-chr16-50632821-4	chr16	50632703	50632903	+	951.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040566, intron 3 of 4)	intron (NR_040566, intron 3 of 4)	-41649.0	NM_027046	69339.0	Mm.422869	NM_027046	ENSMUSG00000050685	Ccdc54	1700007N18Rik|AI644412|BB013989|NYD-SP17	coiled-coil domain containing 54	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-23659058-4	chr11	23658971	23659171	+	958.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023651, intron 1 of 3)	intron (NM_023651, intron 1 of 3)	-6603.0	NM_028956	74467.0	Mm.29536	NM_028304	ENSMUSG00000020280	Pus10	2810013G11Rik|4933435A13Rik|AU014648|C77560|Ccdc139	pseudouridylate synthase 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-8337515-2	chr12	8337415	8337615	+	565.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021429, intron 5 of 6)	intron (NM_021429, intron 5 of 6)	24082.0	NM_021429	58240.0	Mm.309954	NM_021429	ENSMUSG00000020605	Hs1bp3	-	HCLS1 binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69120326-3	chr11	69120220	69120420	+	867.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033041)	promoter-TSS (NM_033041)	-133.0	NM_033041	84653.0	Mm.98505	NM_033041	ENSMUSG00000023781	Hes7	bHLHb37	hes family bHLH transcription factor 7	protein-coding	3.39830483831008	3.78742712310331	2.98749003874884	2.55567261394592	2.86818850923616	3.11458674742047	2.1446461446957	2.81265417252285	-0.840892943783779	0.214948911087801	0.705790102690596
Merged-chr2-84246704-1	chr2	84246604	84246804	+	572.5	f0_c57.idr	Intergenic	Lx9|LINE|L1	178562.0	NM_018782	54598.0	Mm.75467	NM_018782	ENSMUSG00000059588	Calcrl	AV071593|CRLR	calcitonin receptor-like	protein-coding	1.71118162416564	1.92673971983838	2.29278513775376	2.38419210288103	1.72559402362207	1.94159275835391	1.1242401427666	1.10323586897397	-1.67849407061219	0.127991138007784	0.55990678432817
Merged-chr11-20739378-2	chr11	20739278	20739478	+	706.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_181411, intron 1 of 8)	intron (NM_181411, intron 1 of 8)	2178.0	NM_001290545	216549.0	Mm.356580	NM_181411	ENSMUSG00000049659	Aftph	-	aftiphilin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-55182129-1	chr3	55182029	55182229	+	548.0	f1_balb.idr	promoter-TSS (NM_028937)	promoter-TSS (NM_028937)	85.0	NM_028937	74434.0	Mm.25514	NM_028937	ENSMUSG00000027794	Sohlh2	4933406N12Rik|AI413378|Sosf2	spermatogenesis and oogenesis specific basic helix-loop-helix 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-137991369-4	chr3	137991276	137991476	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9827.0	NM_011932	26377.0	Mm.254835	NM_011932	ENSMUSG00000028159	Dapp1	Bam32	dual adaptor for phosphotyrosine and 3-phosphoinositides 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-43912467-4	chr1	43912356	43912556	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21538.0	NM_001310540	22019.0	Mm.401675	NM_009418	ENSMUSG00000041763	Tpp2	TPP-2|TppII	tripeptidyl peptidase II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19120578-2	chr7	19120478	19120678	+	725.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_175530, intron 1 of 1)	intron (NM_175530, intron 1 of 1)	719.0	NM_175530	243867.0	Mm.230830	NM_175530	ENSMUSG00000050428	Fbxo46	20D7-FC4|4932704E22Rik|Fbxo34l	F-box protein 46	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90655671-4	chr2	90655564	90655764	+	891.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21551.0	NM_021512	59015.0	Mm.24532	NM_021512	ENSMUSG00000051329	Nup160	160kDa|2810011M03Rik|AA414952|AU020188|Gtl-13|Gtl1-13|Gtl13|mKIAA0197	nucleoporin 160	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-49968895-4	chr18	49968790	49968990	+	851.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10537.0	NM_001177760	106869.0	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	3.21837764113639	3.15964715301656	3.15237574809854	2.48431578803218	3.31031357691627	3.07274178822637	3.63846723139891	2.88019599902836	0.379288623932975	0.539529164686913	0.954403851908463
Merged-chr1-82554563-2	chr1	82554463	82554663	+	767.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007735, intron 4 of 47)	intron (NM_007735, intron 4 of 47)	32286.0	NM_007735	12829.0	Mm.40253	NM_007735	ENSMUSG00000067158	Col4a4	E130010M05Rik|[a]4(IV)	collagen, type IV, alpha 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-82162869-2	chr12	82162769	82162969	+	895.8333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7147.0	NM_001167983	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-25978021-4	chr8	25977933	25978133	+	764.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1289.0	NM_029884	52120.0	Mm.28326	NM_029884	ENSMUSG00000037260	Hgsnat	9430010M12Rik|AW208455|D8Ertd354e|Tmem76	heparan-alpha-glucosaminide N-acetyltransferase	protein-coding	-2.18292257394068	-2.15545247547656	-2.03304972317742	-2.17058342868585	-2.18099422382073	-2.1536522739386	-2.16187909550322	-2.16936197735154	-0.683654500252594	0.846597994014493	1
Merged-chr7-34920003-2	chr7	34919903	34920103	+	863.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008820, intron 1 of 14)	intron (NM_008820, intron 1 of 14)	7596.0	NM_008820	18624.0	Mm.69751	NM_008820	ENSMUSG00000063931	Pepd	Pep-4|Pep4|dal	peptidase D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-50157936-4	chr17	50157825	50158025	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181397, intron 2 of 9)	intron (NM_181397, intron 2 of 9)	32572.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71290971-1	chr17	71290871	71291071	+	589.0	f1_c57bl6.idr	intron (NM_001357337, intron 2 of 7)	Lx2|LINE|L1	20040.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	-0.659222873881124	-0.467457669729146	-0.653095335706604	-0.655407141193469	-0.299284947319833	-0.649403219615525	-0.652432637419372	-0.24902524991574	2.17829775119309	0.423153308672686	1
Merged-chr9-47533609-2	chr9	47533509	47533709	+	795.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	3257.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-121473021-2	chr10	121472921	121473121	+	849.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_138956, intron 1 of 4)	intron (NM_138956, intron 1 of 4)	3229.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	-0.678726992036069	-0.671268289995539	-0.673740579732324	-0.411795919142577	-0.552797827159307	-0.498274509714265	-0.383531126256075	-0.675300264999928	1.06016483444748	0.684993514719954	1
Merged-chr19-7039524-4	chr19	7039442	7039642	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016737, intron 1 of 13)	CpG	484.0	NM_016737	20867.0	Mm.258633	NM_016737	ENSMUSG00000024966	Stip1	Hop|Sti1|p60	stress-induced phosphoprotein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-37321389-4	chr10	37321289	37321489	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-182463.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-37017702-2	chr17	37017602	37017802	+	732.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_010814, intron 2 of 7)	intron (NM_010814, intron 2 of 7)	5696.0	NM_010814	17441.0	Mm.210857	NM_010814	ENSMUSG00000076439	Mog	B230317G11Rik	myelin oligodendrocyte glycoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-69948927-1	chr16	69948827	69949027	+	637.0	f0_balb.idr	Intergenic	MLTR11B|LTR|ERVK	-85183.0	NM_173069	224318.0	Mm.212743	NM_173069	ENSMUSG00000063163	Speer2	SPEER-2	spermatogenesis associated glutamate (E)-rich protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-35151869-2	chr7	35151769	35151969	+	845.1666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32576.0	NM_007678	12606.0	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	1.15100116536015	1.19547603873011	1.26765039348356	0.657323036970892	1.25646359624732	0.677570377220637	0.667425911011976	1.23227003052309	-0.420888318712312	0.784606886094673	0.998431161219273
Merged-chr3-127837577-4	chr3	127837476	127837676	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346718)	promoter-TSS (NM_001346718)	-53.0	NM_145964	211556.0	Mm.403486	NM_145964	ENSMUSG00000074238	Ap1ar	AA407621|C78909|Gadkin	adaptor-related protein complex 1 associated regulatory protein	protein-coding	6.9765228344908	6.69259596112848	7.03539344510075	7.13339257708966	7.22304459916319	7.13757980829042	7.38545291188468	7.19404506553564	0.279747008263863	0.0920244515211745	0.469168287259654
Merged-chr2-136953963-2	chr2	136953863	136954063	+	636.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_149746, intron 4 of 8)	intron (NR_149746, intron 4 of 8)	54612.0	NM_001038641	74243.0	Mm.330612	NM_028201	ENSMUSG00000027281	Slx4ip	2210009G21Rik|2410004I22Rik|C85661|Slxip	SLX4 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-79734498-3	chr8	79734407	79734607	+	774.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357237, intron 5 of 5)	intron (NM_001357237, intron 5 of 5)	22658.0	NM_001357236	68999.0	Mm.257445	NM_026904	ENSMUSG00000036977	Anapc10	1500026N15Rik|A830003M23Rik|APC10	anaphase promoting complex subunit 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-102459644-3	chr15	102459523	102459723	+	881.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025385, intron 2 of 4)	intron (NM_025385, intron 2 of 4)	453.0	NM_025385	66151.0	Mm.393955	NM_025385	ENSMUSG00000023048	Prr13	1110020C13Rik|2010324E22Rik	proline rich 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-28880978-5	chr6	28880828	28881028	+	982.8666380000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019776, intron 18 of 23)	intron (NM_019776, intron 18 of 23)	-49181.0	NM_138682	192198.0	Mm.443660	NM_138682	ENSMUSG00000049939	Lrrc4	MBAG1|NGL-2|NGL2|NLG-2|Nag14	leucine rich repeat containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-75037429-2	chr8	75037329	75037529	+	682.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001136259, intron 1 of 15)	intron (NM_001136259, intron 1 of 15)	3743.0	NM_011622	21968.0	Mm.1967	NM_011622	ENSMUSG00000042870	Tom1	-	target of myb1 trafficking protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-112102206-3	chr13	112102101	112102301	+	754.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-186250.0	NM_001168403	77318.0	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152522996-2	chr1	152522896	152523096	+	613.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 16 of 17)	intron (NM_016846, intron 16 of 17)	102221.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-116629174-4	chr8	116629062	116629262	+	929.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029441, intron 1 of 6)	intron (NM_029441, intron 1 of 6)	103829.0	NM_029441	75796.0	Mm.159575	NM_029441	ENSMUSG00000031758	Cdyl2	1700029M19Rik|4930453I21Rik|Gm20194	chromodomain protein, Y chromosome-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97987771-4	chr11	97987662	97987862	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1316.0	NM_001163608	72324.0	Mm.39617	NM_028199	ENSMUSG00000017417	Plxdc1	2410003I07Rik|AI848450|Tem7	plexin domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171714101-2	chr1	171714021	171714221	+	637.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32129.0	NM_001360767	12506.0	Mm.1738	NM_007649	ENSMUSG00000015355	Cd48	AI449234|AW610730|BCM1|BLAST|BLAST-1|BLAST1|Bcm-1|MEM-102|SLAMF2|Sgp-60	CD48 antigen	protein-coding	-0.108067361479442	-0.0860527348799941	-0.0931777381985631	-0.098731847996665	0.869224254487703	0.742768012507814	-0.0915992164511781	-0.0977578847566796	4.21493068560011	0.0661680963839503	1
Merged-chr12-51831894-1	chr12	51831794	51831994	+	1000.0	f1_balb.idr	Intergenic	Intergenic	-2358.0	NM_144788	207304.0	Mm.249391	NM_144788	ENSMUSG00000035247	Hectd1	A630086P08Rik|AI844876|b2b327Clo|opm	HECT domain E3 ubiquitin protein ligase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-11662318-3	chr2	11662217	11662417	+	593.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008367, intron 1 of 7)	intron (NM_008367, intron 1 of 7)	19525.0	NM_008367	16184.0	Mm.915	NM_008367	ENSMUSG00000026770	Il2ra	CD25|Il2r|Ly-43	interleukin 2 receptor, alpha chain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-77686677-4	chr11	77686612	77686812	+	953.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024205, intron 1 of 3)	intron (NM_001024205, intron 1 of 3)	573.0	NM_001024205	68564.0	Mm.428996	NM_001024205	ENSMUSG00000037857	Nufip2	1110001M19Rik|9530056D24Rik|AI256692|AI461731|PIG1|mKIAA1321	nuclear fragile X mental retardation protein interacting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-20816656-4	chr18	20816561	20816761	+	975.008301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001361188)	TTS (NM_001361188)	-70257.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-76370103-4	chr2	76370090	76370290	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_153405, exon 1 of 10)	exon (NM_153405, exon 1 of 10)	206.0	NM_153405	241490.0	Mm.33310	NM_153405	ENSMUSG00000042369	Rbm45	Drb1|Drbp1|G430095G15Rik	RNA binding motif protein 45	protein-coding	0.254208630396077	-0.129663086466845	-0.135409996494786	-0.139862867713297	0.827148018562924	0.0822421322610789	-0.13414012392639	-0.139083740629588	1.91989514514671	0.406298052406036	1
Merged-chr16-65739854-3	chr16	65739758	65739958	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-75775.0	NM_028572	73569.0	Mm.25670	NM_028572	ENSMUSG00000091243	Vgll3	1700110N18Rik|4832416J22|C80713|Vgl-3|Vito-2	vestigial like family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-24920557-1	chr13	24920457	24920657	+	565.0	f0_balb.idr	intron (NM_172532, intron 4 of 9)	intron (NM_172532, intron 4 of 9)	14957.0	NR_045182	73326.0	Mm.458692	NR_045182	ENSMUSG00000086796	4932702P03Rik	1700047I16Rik	RIKEN cDNA 4932702P03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-9650889-4	chr4	9650786	9650986	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290367, intron 1 of 22)	MTB_Mm|LTR|ERVL-MaLR	-7169.0	NM_001177852	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	3.11657040477961	4.21839749697626	4.52759104310725	3.78748601839516	3.75191816875629	3.82446772210993	4.28118692355799	3.21002924775971	-0.261771878601134	0.614665659700706	0.977257714216349
Merged-chr10-43479546-3	chr10	43479473	43479673	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199028, intron 1 of 3)	CpG	433.0	NM_199028	331623.0	Mm.490388	NM_199028	ENSMUSG00000038214	Bend3	mKIAA1553	BEN domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-78508893-4	chr8	78508806	78509006	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009033)	promoter-TSS (NM_009033)	22.0	NM_001252089	19656.0	Mm.24718	NM_009033	ENSMUSG00000037070	Rbmxl1	Hnrpg|Rbmx|Rbmxrt	RNA binding motif protein, X-linked like-1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-6016489-2	chr17	6016389	6016589	+	596.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357667, intron 12 of 24)	intron (NM_001357667, intron 12 of 24)	8909.0	NM_001290698	20975.0	Mm.236068	NM_011523	ENSMUSG00000023805	Synj2	AI481647|SJ2|mKIAA0348	synaptojanin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-61241549-3	chr3	61241455	61241655	+	891.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-122952.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-79532554-4	chr14	79532463	79532663	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286411, intron 1 of 8)	intron (NM_001286411, intron 1 of 8)	16889.0	NM_001286411	13709.0	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-5145764-4	chr16	5145667	5145867	+	867.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1342.0	NM_001127725	665119.0	Mm.102072	NM_001127725	ENSMUSG00000091712	Sec14l5	-	SEC14-like lipid binding 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-142434733-1	chr7	142434633	142434833	+	885.0	f1_c57bl6.idr	promoter-TSS (NM_001285858)	promoter-TSS (NM_001285858)	-117.0	NR_153437	55925.0	Mm.213002	NM_018802	ENSMUSG00000031098	Syt8	-	synaptotagmin VIII	protein-coding	-1.09023476881675	-1.0685616793477	-1.08010276399472	-1.08680311188322	-1.08972458488482	-0.884466728634356	-1.07749011540401	-0.536554635628582	2.81372082530117	0.373068459979307	1
Merged-chr5-34233945-4	chr5	34233845	34234045	+	759.270874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001015039, intron 4 of 12)	intron (NM_001015039, intron 4 of 12)	-46235.0	NM_010753	17122.0	Mm.259260	NM_010753	ENSMUSG00000037235	Mxd4	2810410A03Rik|Mad4|bHLHc12	Max dimerization protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-173682438-4	chr1	173682337	173682537	+	910.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162938, intron 3 of 6)	intron (NM_001162938, intron 3 of 6)	8757.0	NM_001162938	100033459.0	Mm.303377	NM_001162938	ENSMUSG00000066677	Ifi208	9830148g24rik|E430029J22Rik|NG2creBAC|Pydc3|Pyr-rv1|Tg(Cspg4-cre)1Akik	interferon activated gene 208	protein-coding	-0.0191036590853629	1.01412694936544	-0.00355180176731229	-0.0093539608371597	0.153776361595587	0.00556030922233447	-0.00190254227201933	0.712634169664414	-0.520402303692847	0.809866554551278	1
Merged-chr10-127583684-2	chr10	127583584	127583784	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 18 of 88)	intron (NM_008512, intron 18 of 88)	37464.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	0.520841243785239	1.3936319564704	1.09166356443869	0.824068183869484	0.522156105130211	0.543677306373037	0.536628570376718	1.05920779871164	-1.86412694987608	0.290228065059129	0.795360911821054
Merged-chr19-46708082-3	chr19	46707986	46708186	+	650.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_020577, exon 3 of 11)	exon (NM_020577, exon 3 of 11)	643.0	NM_020577	57344.0	Mm.28566	NM_020577	ENSMUSG00000003559	As3mt	2310045H08Rik|Cyt19	arsenic (+3 oxidation state) methyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-128707922-4	chr1	128707835	128708035	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-115636.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	5.06596748941026	3.71735404244679	3.775591246736	5.49657342270222	5.34553537763066	5.27549515009997	5.19092185509412	4.71556840602892	0.484309123595387	0.256386471314323	0.755186141447443
Merged-chr3-41563365-4	chr3	41563258	41563458	+	983.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172303)	promoter-TSS (NM_172303)	-25.0	NM_172303	269424.0	Mm.286285	NM_172303	ENSMUSG00000025764	Jade1	AU041499|D530048A03Rik|Phf17|mKIAA1807	jade family PHD finger 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-118127355-4	chr6	118127263	118127463	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362149, intron 2 of 7)	intron (NM_001362149, intron 2 of 7)	11467.0	NM_001362149	78752.0	Mm.300317	NM_030165	ENSMUSG00000042042	Csgalnact2	4632415D10Rik|Galnact2	chondroitin sulfate N-acetylgalactosaminyltransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55015820-1	chr14	55015720	55015920	+	706.0	f1_balb.idr	intron (NM_026890, intron 1 of 10)	intron (NM_026890, intron 1 of 10)	366.0	NM_026890	68966.0	Mm.21214	NM_026890	ENSMUSG00000022204	Ngdn	1500001L15Rik|Ngd|neuroguidin	neuroguidin, EIF4E binding protein	protein-coding	3.06502308093766	1.76584334186922	3.50771643549136	3.62633195307544	3.47129498730485	3.02706466028193	3.88548548506104	4.37496973838399	0.935391188870783	0.150525806863601	0.602589676101411
Merged-chr7-127213585-4	chr7	127213478	127213678	+	804.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_017461)	TTS (NM_017461)	1970.0	NM_016754	17907.0	Mm.14526	NM_016754	ENSMUSG00000030672	Mylpf	2410014J02Rik|MLC-2|Mlc2	myosin light chain, phosphorylatable, fast skeletal muscle	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-87773173-2	chr18	87773073	87773273	+	744.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	1060862.0	NM_001361145	12405.0	Mm.70775	NM_172633	ENSMUSG00000024647	Cbln2	6330593N19Rik|A730004O05	cerebellin 2 precursor protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99056462-2	chr15	99056362	99056562	+	684.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163589, intron 3 of 8)	intron (NM_001163589, intron 3 of 8)	1288.0	NM_001163589	19132.0	Mm.2477	NM_013639	ENSMUSG00000023484	Prph	Prph1	peripherin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-97801544-2	chr13	97801444	97801644	+	822.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50432.0	NR_152263	111365222.0	Mm.440079	NR_152263		Eyelinc18	-	uncharacterized EyeLinc18	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-148790604-3	chr5	148790501	148790701	+	889.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	12638.0	NR_131106	78015.0	Mm.243839	NR_131106	ENSMUSG00000085740	4930505K14Rik	-	RIKEN cDNA 4930505K14 gene	ncRNA	-0.199050130415637	-0.441597361120429	-0.445189696932844	0.154669664798719	-0.192877463446288	-0.440785565628431	-0.444398648224672	-0.447469399798894	-1.76631515259422	0.496988609630808	1
Merged-chr1-75168657-4	chr1	75168544	75168744	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159906)	promoter-TSS (NM_001159906)	-2.0	NM_001159905	68818.0	Mm.32646	NM_026846	ENSMUSG00000026197	Zfand2b	1110060O18Rik|C81256	zinc finger, AN1 type domain 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-134099440-4	chr4	134099341	134099541	+	939.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13C2|LTR|ERVK	-3142.0	NR_045571	67586.0	Mm.282029	NM_026257	ENSMUSG00000012126	Ubxn11	4930506L07Rik|D4Bwg1540e|Soc|Soci|Ubxd5	UBX domain protein 11	protein-coding	3.48254190393162	3.12409281795294	3.17895971323988	2.53477407317619	2.62863582079065	2.2686895289169	2.35658134039737	1.44890329181183	-1.70281729534333	0.0284898885035803	0.228796306737588
Merged-chr7-135652409-4	chr7	135652337	135652537	+	945.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015548)	promoter-TSS (NR_015548)	-123.0	NR_015548	67765.0	Mm.445272	NR_015548	ENSMUSG00000097471	5830432E09Rik	-	RIKEN cDNA 5830432E09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-55110645-4	chr9	55110535	55110735	+	995.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38734.0	NM_180600	109161.0	Mm.207894	NM_180600	ENSMUSG00000032307	Ube2q2	3010021M21Rik	ubiquitin-conjugating enzyme E2Q family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-43840183-2	chr5	43840062	43840262	+	623.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009763, intron 7 of 8)	B1_Mur3|SINE|Alu	21269.0	NM_009763	12182.0	Mm.246332	NM_009763	ENSMUSG00000029082	Bst1	114/A10|A530073F09|BP-3|Bp3|Bsta1|CD157|Ly65	bone marrow stromal cell antigen 1	protein-coding	0.0424890201343923	0.271418957709382	0.95431194598377	0.0511898204886245	0.0437881629973069	0.599389262291799	0.253104403963164	0.0521010941675671	-0.881906412781717	0.667449251674463	1
Merged-chr1-191086723-4	chr1	191086629	191086829	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11685.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99876956-3	chr15	99876870	99877070	+	667.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER57D|LTR|ERV1	-1514.0	NM_001113545	65970.0	Mm.33207	NM_023063	ENSMUSG00000023022	Lima1	Eplin	LIM domain and actin binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3759672-4	chr12	3759584	3759784	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027869, intron 16 of 20)	intron (NR_027869, intron 16 of 20)	-47296.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-81107621-4	chr5	81107502	81107702	+	909.366699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198702, intron 2 of 27)	intron (NM_198702, intron 2 of 27)	86009.0	NM_198702	319387.0	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-148626428-4	chr4	148626347	148626547	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003898, intron 1 of 6)	CpG	549.0	NR_027864	230908.0	Mm.22453	NM_145556	ENSMUSG00000041459	Tardbp	1190002A23Rik|C85084|TDP-43|Tdp43	TAR DNA binding protein	protein-coding	2.79361024958576	2.75727106944512	3.36713931813018	3.01918828979123	1.96702056140538	2.01503721754822	2.44206960108965	1.67328059620585	-2.02103817152132	0.0100701331776332	0.109638346520185
Merged-chr7-141264274-2	chr7	141264174	141264374	+	978.1666869999999	f1_balb.idr|f1_c57bl6.idr	exon (NM_016850, exon 7 of 10)	exon (NM_016850, exon 7 of 10)	2150.0	NM_001252601	54123.0	Mm.3233	NM_016850	ENSMUSG00000025498	Irf7	-	interferon regulatory factor 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-93124352-5	chr10	93124199	93124399	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36577.0	NM_146239	237459.0	Mm.217404	NM_146239	ENSMUSG00000020015	Cdk17	6430598J10Rik|Pctk2	cyclin-dependent kinase 17	protein-coding	5.75790456638494	5.64192967596593	5.45695407142414	5.18428078205603	4.68610594727409	4.37653154037694	5.15253453683047	3.70102129746367	-1.12421248839508	0.0015261603822483	0.0274114854284657
Merged-chr7-45402221-2	chr7	45402121	45402321	+	684.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-3739.0	NM_010596	16495.0	Mm.12955	NM_010596	ENSMUSG00000038201	Kcna7	Kv1.7	potassium voltage-gated channel, shaker-related subfamily, member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-99969395-2	chr1	99969295	99969495	+	882.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172851, intron 3 of 23)	RLTR1D2_MM|LTR|ERV1	196630.0	NM_172851	241175.0	Mm.251301	NM_172851	ENSMUSG00000067028	Cntnap5b	C230078M14Rik|Caspr5-2	contactin associated protein-like 5B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-59219895-4	chr12	59219804	59220004	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033156)	promoter-TSS (NM_001033156)	-421.0	NM_001033156	70611.0	Mm.311026	NM_001033156	ENSMUSG00000035329	Fbxo33	5730501N20Rik|AI642135	F-box protein 33	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69420007-4	chr11	69419900	69420100	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001081330)	TTS (NM_001081330)	-6325.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-103222941-2	chr11	103222857	103223057	+	854.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_016896, intron 14 of 15)	B1_Mur4|SINE|Alu	-4525.0	NM_177801	328019.0	Mm.189646	NM_177801	ENSMUSG00000044787	Spata32	4933400C05Rik|VAD1.2	spermatogenesis associated 32	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-78267677-4	chr16	78267587	78267787	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-12233.0	NR_045698	100503619.0	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-88303697-4	chr7	88303592	88303792	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009982, intron 5 of 6)	intron (NM_009982, intron 5 of 6)	25607.0	NM_001311790	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	4.16095183273373	4.41475030883667	3.65633096702219	4.73567467489851	4.88917108762284	4.95759223939727	4.93078078524849	5.1007256608383	0.836935612158944	0.0242458407496133	0.204668103175793
Merged-chr9-4380768-4	chr9	4380693	4380893	+	876.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145609, intron 1 of 2)	intron (NM_145609, intron 1 of 2)	4241.0	NM_145609	78100.0	Mm.206549	NM_145609	ENSMUSG00000041124	Msantd4	8430410K20Rik|Mysantd4	Myb/SANT-like DNA-binding domain containing 4 with coiled-coils	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-8214849-4	chr14	8214741	8214941	+	988.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001305936, exon 1 of 3)	5' UTR (NM_001305936, exon 1 of 3)	339.0	NM_001305936	71393.0	Mm.292712	NM_027782	ENSMUSG00000021752	Kctd6	5430433B02Rik|AU044285	potassium channel tetramerisation domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-6273563-4	chr2	6273461	6273661	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040333, intron 3 of 6)	intron (NR_040333, intron 3 of 6)	-49196.0	NM_001080548	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	5.96487883393669	5.89519957568495	5.57780391537935	5.71353180747499	6.07787020636261	5.20927995553112	5.76877071081428	5.26411019370265	-0.179441842155078	0.518141380209978	0.947641799425091
Merged-chr11-30799679-4	chr11	30799576	30799776	+	665.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134013, intron 3 of 46)	B3A|SINE|B2	27901.0	NM_134013	103554.0	Mm.240066	NM_134013	ENSMUSG00000040850	Psme4	AA409398|AU041366|TEMO|mKIAA0077	proteasome (prosome, macropain) activator subunit 4	protein-coding	0.130754760614321	-0.21389863801865	0.326063122724356	0.18499224729126	-0.225899648693084	-0.212948173065237	-0.217179320761547	-0.220777249813566	-3.66824076404964	0.119963184791541	1
Merged-chr18-5134352-4	chr18	5134244	5134444	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31387.0	NR_153824	102637682.0	Mm.451914	NR_153824		Gm26682	Gm38715	predicted gene, 26682	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-68299322-4	chr18	68299221	68299421	+	892.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153794, intron 1 of 3)	intron (NM_153794, intron 1 of 3)	1012.0	NM_153794	108654.0	Mm.125857	NM_153794	ENSMUSG00000038121	Fam210a	4933403F05Rik|AA987140|AV134576|AW491926	family with sequence similarity 210, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-53355262-3	chr5	53355161	53355361	+	771.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	88155.0	NM_001145433	66278.0	Mm.27900	NM_001145433	ENSMUSG00000061461	Smim20	1110067B18Rik|1810013D10Rik|N28078	small integral membrane protein 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-8740350-5	chr10	8740194	8740394	+	776.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175155, exon 15 of 20)	exon (NM_175155, exon 15 of 20)	145776.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-152036740-2	chr4	152036708	152036908	+	709.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_031867, intron 1 of 5)	B1_Mus1|SINE|Alu	1682.0	NM_031867	110326.0	Mm.29232	NM_031867	ENSMUSG00000028950	Tas1r1	Gpr70|T1r1|TR1	taste receptor, type 1, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-59546903-4	chr4	59546814	59547014	+	879.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144904, intron 1 of 14)	intron (NM_144904, intron 1 of 14)	2450.0	NM_178164	230257.0	Mm.331640	NM_144904	ENSMUSG00000028382	Ptbp3	5830471K22Rik|AA407443|AI462022|AW107884|C86549|Rod1	polypyrimidine tract binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-4794548-1	chr7	4794448	4794648	+	1000.0	f1_balb.idr	TTS (NM_009081)	TTS (NM_009081)	1583.0	NM_009081	19943.0	Mm.379002	NM_009081	ENSMUSG00000030432	Rpl28	D7Wsu21e	ribosomal protein L28	protein-coding	-1.8418762459921	-1.8125357239735	-1.82140854000656	-1.82869693527674	-1.56059678980999	-1.8106129477253	-1.81939992894326	-1.82739231600805	1.3620893379502	0.699511506488145	1
Merged-chr13-95891245-4	chr13	95891111	95891311	+	916.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027711, intron 1 of 35)	intron (NM_027711, intron 1 of 35)	711.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	1.16684610595205	0.861401962021023	1.57459483705669	1.52324040244144	1.83729859003778	0.86559186659774	2.25838682221566	0.830104656184533	0.939802600462898	0.489463994375892	0.934233058307661
Merged-chr2-73463843-6	chr2	73463778	73463978	+	931.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	-9989.0	NM_001289722	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-87351229-4	chr3	87351093	87351293	+	974.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6688.0	NM_009690	11801.0	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	3.87351906081362	4.52067494762987	5.28112530566555	5.52953689319318	3.7791028532809	3.64024452206712	2.99931957189508	4.61092118391429	-1.34133645425539	0.00702134454584908	0.0852652751630539
Merged-chr8-83260597-4	chr8	83260494	83260694	+	830.616699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111304, intron 15 of 20)	intron (NM_001111304, intron 15 of 20)	-29754.0	NM_009463	22227.0	Mm.4177	NM_009463	ENSMUSG00000031710	Ucp1	AI385626|Slc25a7|Ucp	uncoupling protein 1 (mitochondrial, proton carrier)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-11144119-4	chr16	11144022	11144222	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027502, intron 19 of 22)	LSU-rRNA_Hsa|rRNA|rRNA	-9590.0	NM_029582	106200.0	Mm.291015	NM_029582	ENSMUSG00000022498	Txndc11	2810408E11Rik|AI427833|EFP1|Txdc11	thioredoxin domain containing 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-11579595-2	chr4	11579495	11579695	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001256142)	promoter-TSS (NM_001256142)	-67.0	NM_001256142	100503583.0	Mm.249437	NM_001256142	ENSMUSG00000094595	Fsbp	-	fibrinogen silencer binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101289392-2	chr15	101289292	101289492	+	598.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026566, intron 2 of 2)	ORR1D1|LTR|ERVL-MaLR	-3820.0	NR_033803	77717.0	Mm.391998	NR_033803	ENSMUSG00000075408	6030408B16Rik	AI225877	RIKEN cDNA 6030408B16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-100461872-4	chr15	100461780	100461980	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7131.0	NM_001357983	68614.0	Mm.275272	NM_134093	ENSMUSG00000037353	Letmd1	1110019O13Rik|AI593524|BB130465|BB235638|HCCR-2|HCCR1|MCC-32|Mccr	LETM1 domain containing 1	protein-coding	6.0454191127666	5.78035018091749	4.47527262935355	5.5612063047773	5.6533742706113	4.60141868783816	4.50983546947153	4.96889561574085	-0.644064745903799	0.0897609418786594	0.462740667714189
Merged-chr2-36234654-4	chr2	36234549	36234749	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008969, intron 2 of 10)	MIRb|SINE|MIR	4223.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80692966-4	chr10	80692831	80693031	+	991.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172457, intron 1 of 3)	intron (NM_172457, intron 1 of 3)	8889.0	NM_172457	208228.0	Mm.49309	NM_172457	ENSMUSG00000003348	Mob3a	5330417K06Rik|A630029F06|AV218468|Mobkl2a	MOB kinase activator 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-87925614-4	chr7	87925534	87925734	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081414, intron 4 of 9)	intron (NM_001081414, intron 4 of 9)	341466.0	NM_001143834	108071.0	Mm.235018	NM_001033224	ENSMUSG00000049583	Grm5	6430542K11Rik|AI850523|Glu5R|Gprc1e|mGluR5|mGluR5b	glutamate receptor, metabotropic 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-97869638-4	chr13	97869535	97869735	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	118523.0	NR_152263	111365222.0	Mm.440079	NR_152263		Eyelinc18	-	uncharacterized EyeLinc18	ncRNA	4.5132876229489	3.8173936436488	4.51617744303719	4.14154251253784	4.07588854316855	4.30306379018793	3.62252393137993	5.00971550206198	0.0929033296856435	0.836767418164419	0.998431161219273
Merged-chr12-85527367-2	chr12	85527267	85527467	+	887.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	53477.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-154614297-2	chr2	154614197	154614397	+	548.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_199304, intron 1 of 14)	intron (NM_199304, intron 1 of 14)	929.0	NM_199304	228807.0	Mm.103555	NM_199304	ENSMUSG00000059842	Zfp341	Znf341	zinc finger protein 341	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-66855391-2	chr15	66855291	66855491	+	781.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23562.0	NM_009192	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-13828829-2	chr9	13828729	13828929	+	566.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_176836, intron 2 of 9)	intron (NM_176836, intron 2 of 9)	1113.0	NM_176836	72826.0	Mm.246174	NM_176836	ENSMUSG00000037808	Fam76b	2810485I05Rik|C78303	family with sequence similarity 76, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72676062-1	chr6	72675962	72676162	+	542.0	f1_c57bl6.idr	intron (NM_001079822, intron 3 of 12)	intron (NM_001079822, intron 3 of 12)	46231.0	NR_040421	100038714.0	Mm.321330	NR_040421		Gm15401	-	predicted gene 15401	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-36249521-4	chr8	36249418	36249618	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081150)	promoter-TSS (NM_001081150)	-2.0	NM_001081150	244421.0	Mm.324032	NM_001081150	ENSMUSG00000039633	Lonrf1	-	LON peptidase N-terminal domain and ring finger 1	protein-coding	6.86133114068441	6.78148426454272	7.1702161038588	7.10119744198493	6.51893301743743	6.92752900556024	6.75658539507858	6.56151574917521	-0.311485769459737	0.0918525342141536	0.468823045448702
Merged-chr8-126551914-2	chr8	126551814	126552014	+	667.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41522.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-42045989-4	chr19	42045881	42046081	+	910.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_020033)	TTS (NM_020033)	130.0	NM_026152	67432.0	Mm.24196	NM_026152	ENSMUSG00000025176	Hoga1	0610010D20Rik|Dhdpsl|Npl2	4-hydroxy-2-oxoglutarate aldolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-69438439-2	chr12	69438339	69438539	+	647.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37111.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-90697984-1	chr11	90697884	90698084	+	552.0	f0_balb.idr	Intergenic	Intergenic	-10383.0	NM_001357543	71943.0	Mm.167868	NM_028011	ENSMUSG00000020541	Tom1l1	2310045L10Rik|C80573|Srcasm	target of myb1-like 1 (chicken)	protein-coding	0.959145678494096	1.34085155385155	1.17654557871622	0.571900691970872	0.968590725278321	0.590398893979051	0.581118453674687	1.02804918452179	-1.1711067276238	0.461717043038562	1
Merged-chr10-10408342-4	chr10	10408246	10408446	+	990.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127353, intron 13 of 36)	intron (NM_001127353, intron 13 of 36)	63968.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-57228873-2	chr12	57228773	57228973	+	997.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E-int|LTR|ERVL-MaLR	-1539.0	NM_001037746	328099.0	Mm.268180	NM_001037746	ENSMUSG00000079104	Prps1l3	AU021838|AW536152|Gm5081	phosphoribosyl pyrophosphate synthetase 1-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122730661-2	chr5	122730561	122730761	+	824.833313	f1_balb.idr|f1_c57bl6.idr	TTS (NM_011026)	TTS (NM_011026)	23117.0	NM_001310718	18438.0	Mm.290884	NM_011026	ENSMUSG00000029470	P2rx4	AI504491|AW555605|D5Ertd444e|P2X4	purinergic receptor P2X, ligand-gated ion channel 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-53694679-1	chr16	53694579	53694779	+	552.0	f1_c57bl6.idr	Intergenic	Lx|LINE|L1	-878935.0	NR_040495	73820.0	Mm.60493	NR_040495		4930404A05Rik	-	RIKEN cDNA 4930404A05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-5614392-4	chr13	5614284	5614484	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	243708.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-80730730-1	chr12	80730630	80730830	+	542.0	f0_balb.idr	Intergenic	Intergenic	29985.0	NM_001008423	380768.0	Mm.29367	NM_001008423	ENSMUSG00000062961	Ccdc177	Gm1568	coiled-coil domain containing 177	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-79446011-4	chr15	79445910	79446110	+	842.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3867.0	NM_001359863	27373.0	Mm.30199	NM_013767	ENSMUSG00000022433	Csnk1e	AI426939|AI551861|AW457082|CK1epsilon|CKIe|KC1epsilon|tau	casein kinase 1, epsilon	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-68673672-4	chr10	68673577	68673777	+	748.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1E2|LTR|ERVL-MaLR	-50069.0	NM_177794	327766.0	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-54087270-2	chr11	54087170	54087370	+	563.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13654.0	NM_001136076	18452.0	Mm.3705	NM_011031	ENSMUSG00000018906	P4ha2	AA407196|C76437|P4hl	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-117542656-2	chr6	117542556	117542756	+	766.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47421.0	NR_152214	100126203.0	Mm.217172	NR_152214		6820426E19Rik	Gm43983	RIKEN cDNA 6820426E19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100471202-2	chr7	100471102	100471302	+	611.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1789.0	NM_009464	22229.0	Mm.6254	NM_009464	ENSMUSG00000032942	Ucp3	AI645527|Slc25a9|UCP-3	uncoupling protein 3 (mitochondrial, proton carrier)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-63371028-2	chr17	63370928	63371128	+	587.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_015794, intron 5 of 8)	intron (NM_015794, intron 5 of 8)	-58055.0	NR_130176	414079.0	Mm.444282	NR_130176	ENSMUSG00000090565	4930405O22Rik	-	RIKEN cDNA 4930405O22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-30969882-2	chr3	30969782	30969982	+	819.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001165955)	promoter-TSS (NM_001165955)	-467.0	NM_001165956	241915.0	Mm.233173	NM_153421	ENSMUSG00000037652	Phc3	E030046K01Rik|Edr3|Hph3	polyhomeotic 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-89124004-2	chr15	89123904	89124104	+	649.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163319)	promoter-TSS (NM_001163319)	-854.0	NM_001163319	328580.0	Mm.380934	NM_001163319	ENSMUSG00000051786	Tubgcp6	AI843275|D430023H11|GCP-6|mKIAA1669	tubulin, gamma complex associated protein 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99965316-2	chr15	99965216	99965416	+	855.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1-int|LTR|ERVL-MaLR	-4749.0	NM_001080948	207214.0	Mm.28811	NM_001024526	ENSMUSG00000023025	Larp4	DXErtd793|DXErtd793e	La ribonucleoprotein domain family, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-68860623-3	chr2	68860540	68860740	+	779.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172856)	promoter-TSS (NM_172856)	-801.0	NM_172856	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-56031115-3	chr16	56031003	56031203	+	655.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-1386.0	NM_001356450	76302.0	Mm.310642	NM_001024622	ENSMUSG00000071533	Pcnp	1110018D06Rik|AI647035	PEST proteolytic signal containing nuclear protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-123216489-2	chr8	123216389	123216589	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177279, intron 2 of 2)	ID4|SINE|ID	3631.0	NM_177279	320869.0	Mm.258354	NM_177279	ENSMUSG00000048478	Spata33	4732415M23Rik|AI847264	spermatogenesis associated 33	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-63753925-2	chr1	63753825	63754025	+	797.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001256158)	TTS (NM_001256158)	15342.0	NM_001256158	74426.0	Mm.159197	NM_001256158	ENSMUSG00000025961	4933402D24Rik	-	RIKEN cDNA 4933402D24 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5425600-3	chr19	5425486	5425686	+	891.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024176)	promoter-TSS (NM_024176)	442.0	NM_001256515	107242.0	Mm.329658	NM_134149	ENSMUSG00000047423	AI837181	Bles03|N28173	expressed sequence AI837181	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-20694389-3	chr14	20694270	20694470	+	905.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028428)	promoter-TSS (NM_028428)	-598.0	NM_028428	73068.0	Mm.277552	NM_028428	ENSMUSG00000039357	Fut11	3110009G03Rik|AI317183	fucosyltransferase 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-84228717-4	chr3	84228619	84228819	+	969.258301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271726, intron 1 of 11)	intron (NM_001271726, intron 1 of 11)	-7842.0	NM_030706	80890.0	Mm.44876	NM_030706	ENSMUSG00000027993	Trim2	mKIAA0517|narf	tripartite motif-containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-62574968-2	chr11	62574868	62575068	+	643.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011706, intron 1 of 15)	intron (NM_011706, intron 1 of 15)	482.0	NM_011706	22368.0	Mm.288064	NM_011706	ENSMUSG00000018507	Trpv2	GRC|OTRPC2|VRL-1|Vrl1	transient receptor potential cation channel, subfamily V, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-120317076-2	chr2	120316976	120317176	+	698.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_027618, exon 26 of 26)	non-coding (NR_027618, exon 26 of 26)	-2911.0	NM_001024145	271844.0	Mm.24880	NM_001024145	ENSMUSG00000046971	Pla2g4f	4732472I07Rik|Gm647|Pla2zeta	phospholipase A2, group IVF	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-22443323-2	chr16	22443223	22443423	+	572.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-3753.0	NM_023794	104156.0	Mm.155708	NM_023794	ENSMUSG00000013089	Etv5	1110005E01Rik|8430401F14Rik|ERM	ets variant 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81137440-4	chr10	81137348	81137548	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010731, intron 1 of 2)	CpG	1177.0	NM_010731	16969.0	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-9029905-2	chr13	9029805	9030005	+	717.1999509999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	-33893.0	NM_027000	69237.0	Mm.41800	NM_027000	ENSMUSG00000021149	Gtpbp4	2610028C09Rik|Crfg|Gtpbp3|NGB|Nog1	GTP binding protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-116033797-2	chr3	116033697	116033897	+	794.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25500.0	NM_001163514	58193.0	Mm.41739	NM_021388	ENSMUSG00000027963	Extl2	3000001D04Rik|AW146439	exostoses (multiple)-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-13213579-4	chr8	13213418	13213618	+	755.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12894.0	NM_025768	66790.0	Mm.34901	NM_025768	ENSMUSG00000038515	Grtp1	5430401C05Rik|C81211|Tbc1d6	GH regulated TBC protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-88991263-1	chr11	88991163	88991363	+	745.0	f1_c57bl6.idr	3' UTR (NM_016706, exon 7 of 7)	3' UTR (NM_016706, exon 7 of 7)	-8140.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	0.926377318245178	1.27803311044948	2.72820505738322	0.961633204225808	1.95571770788245	1.69421625221892	1.91716593847608	1.57669985358552	0.0768458662093929	0.94974844696628	0.998431161219273
Merged-chr10-20667362-2	chr10	20667262	20667462	+	576.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_013875, intron 1 of 12)	intron (NM_013875, intron 1 of 12)	57716.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-22200433-3	chr10	22200328	22200528	+	905.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009018, intron 6 of 6)	RLTR45|LTR|ERVK	26526.0	NM_009018	19370.0	Mm.439724	NM_009018		Raet1c	RAE-1gamma	retinoic acid early transcript gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98937175-3	chr11	98937081	98937281	+	850.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177302)	promoter-TSS (NM_001177302)	-515.0	NM_009024	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-108532950-4	chr6	108532853	108533053	+	999.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 60 of 61)	intron (NM_010585, intron 60 of 61)	43210.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	0.402929631879583	-0.0239045592366285	-0.0284631758536013	0.120717224732186	0.319637733509164	-0.022874120510394	-0.0274595135368125	0.47340713955579	0.594810886648825	0.782773549708096	1
Merged-chr19-56740332-4	chr19	56740226	56740426	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17954.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-139292058-2	chr4	139291958	139292158	+	917.583374	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001271405)	TTS (NM_001271405)	18650.0	NR_151463	212555.0	Mm.45131	NM_145384	ENSMUSG00000028744	Pqlc2	BC019216	PQ loop repeat containing 2	protein-coding	0.257745447828772	0.286193041981373	0.277002665232887	1.17198288715435	0.259556989533267	1.11182565472588	0.279040007295281	0.887820904768055	0.565949092195885	0.77566210935555	1
Merged-chr14-31435324-5	chr14	31435251	31435451	+	981.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011894, intron 1 of 8)	CpG	749.0	NM_011894	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-108297641-3	chr13	108297606	108297806	+	802.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18631.0	NM_178683	218581.0	Mm.32318	NM_178683	ENSMUSG00000021697	Depdc1b	9830132O03|AW260467|XTP1	DEP domain containing 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-33906263-4	chr1	33906172	33906372	+	859.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177235, intron 1 of 6)	intron (NM_177235, intron 1 of 6)	1349.0	NM_177235	320705.0	Mm.336619	NM_177235	ENSMUSG00000042182	Bend6	B230209C24Rik	BEN domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-66895088-2	chr9	66894988	66895188	+	933.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	24617.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127288144-4	chr7	127288034	127288234	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8126.0	NM_001253873	16408.0	Mm.1618	NM_008400	ENSMUSG00000030830	Itgal	(p180)|Cd11a|LFA-1|LFA-1A|Ly-15|Ly-21	integrin alpha L	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-14249938-4	chr2	14249839	14250039	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008625, intron 4 of 29)	(GA)n|Simple_repeat|Simple_repeat	-11064.0	NR_030609	100124488.0		NR_030609	ENSMUSG00000077897	Mir511	Mirn511|mir-511|mmu-mir-511	microRNA 511	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122642772-1	chr5	122642672	122642872	+	544.0	f1_balb.idr	Intergenic	Intergenic	-1139.0	NM_001038839	18439.0	Mm.42026	NM_011027	ENSMUSG00000029468	P2rx7	AI467586|P2X(7)|P2X7R	purinergic receptor P2X, ligand-gated ion channel, 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-85331726-4	chr9	85331630	85331830	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4580.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	3.77974010408938	3.29640089672225	4.34625635804512	3.78699934231038	3.69039330198669	3.32184658241079	4.42366024222517	4.0506399578133	0.11131703972895	0.824601854409898	0.998431161219273
Merged-chr13-42051299-2	chr13	42051194	42051394	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_007772)	promoter-TSS (NM_007772)	-727.0	NM_007772	110521.0	Mm.4808	NM_007772	ENSMUSG00000021366	Hivep1	Cryabp1	human immunodeficiency virus type I enhancer binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-100583309-4	chr5	100583203	100583403	+	972.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11098.0	NM_139198	231507.0	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-50130938-1	chr18	50130838	50131038	+	551.0	f1_c57bl6.idr	intron (NM_008292, intron 2 of 23)	intron (NM_008292, intron 2 of 23)	2737.0	NM_008292	15488.0	Mm.277857	NM_008292	ENSMUSG00000024507	Hsd17b4	17-beta-HSD|17[b]-HSD|DBP|MFE-2|MFP2|MPF-2|Mfp-2|perMFE-2	hydroxysteroid (17-beta) dehydrogenase 4	protein-coding	-2.18375600819439	-2.15556918946382	-2.16409311609999	-2.17109492323169	-2.18177734563694	-2.01960173909294	-2.16216348594872	-2.16984160310277	0.759018020146679	0.829933115115583	1
Merged-chr7-30280912-4	chr7	30280820	30281020	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146186)	promoter-TSS (NM_146186)	-499.0	NM_146186	233064.0	Mm.271677	NM_146186	ENSMUSG00000037020	Wdr62	2310038K02Rik|b2b1508Clo	WD repeat domain 62	protein-coding	6.14889123045511	5.87294460102673	5.92203401294603	5.98997773040686	6.70211109454867	6.56293810008223	6.18537870162625	6.53451360156065	0.564633590649111	0.00869709864726595	0.0985645811075139
Merged-chr7-19563242-2	chr7	19563142	19563342	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199149)	promoter-TSS (NM_199149)	-844.0	NM_199149	232947.0	Mm.219662	NM_199149	ENSMUSG00000051403	Ppp1r37	Gm158|Lrrc68	protein phosphatase 1, regulatory subunit 37	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-43313257-4	chr7	43313151	43313351	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357811)	promoter-TSS (NM_001357811)	49.0	NM_001357812	69930.0	Mm.45367	NM_027264	ENSMUSG00000012640	Zfp715	2610041B18Rik|mszf15	zinc finger protein 715	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-37247623-4	chr9	37247509	37247709	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145960, intron 1 of 18)	intron (NM_001145960, intron 1 of 18)	8129.0	NM_020258	56857.0	Mm.440037	NM_020258	ENSMUSG00000032122	Slc37a2	G3PP|Slc37a1|cI-2|ci2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-4727092-4	chr15	4727005	4727205	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016704)	promoter-TSS (NM_016704)	-105.0	NM_016704	12274.0	Mm.20247	NM_016704	ENSMUSG00000022181	C6	AW111623	complement component 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-73119141-2	chr14	73119041	73119241	+	847.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23369.0	NM_001170694	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-58915657-2	chr4	58915557	58915757	+	592.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2908.0	NM_172381	230249.0	Mm.234801	NM_172381	ENSMUSG00000050812	AI314180	AW558785|BB181316|Ecpas|mKIAA0368	expressed sequence AI314180	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-58733740-2	chr1	58733640	58733840	+	643.75	f1_balb.idr|f1_c57bl6.idr	TTS (NM_009805)	TTS (NM_009805)	3188.0	NM_001293805	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-20749134-2	chr18	20749034	20749234	+	665.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2730.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-31075363-4	chr2	31075277	31075477	+	972.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355105, intron 6 of 15)	intron (NM_001355105, intron 6 of 15)	21123.0	NM_001177650	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-34514020-4	chr5	34513905	34514105	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_139064)	promoter-TSS (NM_139064)	-26.0	NM_139064	231130.0	Mm.28615	NM_139064	ENSMUSG00000059866	Tnip2	1810020H16Rik|ABIN-2|AI428870	TNFAIP3 interacting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-86971119-4	chr17	86971028	86971228	+	804.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145491, intron 2 of 4)	intron (NM_145491, intron 2 of 4)	8017.0	NM_145491	104215.0	Mm.826	NM_145491	ENSMUSG00000024143	Rhoq	Arhq|TC10A|Tc10	ras homolog family member Q	protein-coding	2.13380449877578	1.81166011746903	1.75605674212498	2.24811020404595	2.15136666900702	1.82390079065008	2.91246233401915	2.0231547890555	0.739837809367938	0.414991990286221	0.896676881011847
Merged-chr16-34114305-2	chr16	34114205	34114405	+	614.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177357, intron 34 of 59)	intron (NM_177357, intron 34 of 59)	-147267.0	NM_009471	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-82857862-2	chr10	82857803	82858003	+	865.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001042523, intron 1 of 14)	intron (NM_001042523, intron 1 of 14)	-1303.0	NM_001042513	50493.0	Mm.210155	NM_015762	ENSMUSG00000020250	Txnrd1	TR|TR1|TrxR1	thioredoxin reductase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-63495486-2	chr4	63495386	63495586	+	833.166626	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_028640, exon 1 of 12)	5' UTR (NM_028640, exon 1 of 12)	505.0	NM_001008793	73750.0	Mm.300397	NM_028640	ENSMUSG00000039137	Whrn	1110035G07Rik|AW122018|AW742671|C430046P22Rik|Dfnb31|Ush2d|wi	whirlin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-155385944-2	chr2	155385867	155386067	+	796.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_178111, exon 3 of 4)	exon (NM_178111, exon 3 of 4)	4111.0	NM_178111	68728.0	Mm.293605	NM_178111	ENSMUSG00000038375	Trp53inp2	1110029F20Rik|Tp53inp2	transformation related protein 53 inducible nuclear protein 2	protein-coding	0.902263136173623	0.606999393590662	0.593543515536135	1.70354617448317	1.27000952110498	0.609993809791413	0.596536069067712	1.63658427514856	0.225692999230667	0.889955696079655	0.998431161219273
Merged-chr2-103801280-3	chr2	103801178	103801378	+	886.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3638.0	NM_016739	53872.0	Mm.427589	NM_016739	ENSMUSG00000027184	Caprin1	AL022980|Caprin-1|Gpiap|Gpiap1|Mmgpip137|P137|rng105	cell cycle associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-13674887-4	chr8	13674811	13675011	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 1 of 23)	intron (NM_009025, intron 1 of 23)	2676.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-114695928-2	chr5	114695828	114696028	+	713.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-4993.0	NM_019821	56356.0	Mm.275766	NM_019821	ENSMUSG00000011884	Gltp	1110001F24Rik|C76925|C77564	glycolipid transfer protein	protein-coding	-1.53722258964646	-1.35557023456888	-1.51521609278655	-1.52305243984666	-1.24945022075946	-1.50360887271967	-1.51305647152326	-1.52164973746956	0.640848314145952	0.855386040730507	1
Merged-chr14-47373213-2	chr14	47373113	47373313	+	650.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145953)	promoter-TSS (NM_001145953)	-647.0	NM_010705	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55122146-4	chr14	55122043	55122243	+	983.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5208.0	NM_177049	319984.0	Mm.19047	NM_177049	ENSMUSG00000022208	Jph4	9330157P13Rik|JP-4|JPHL1	junctophilin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-35162059-3	chr2	35161964	35162164	+	818.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_012018, exon 30 of 44)	exon (NM_012018, exon 30 of 44)	29830.0	NM_001290635	26920.0	Mm.231332	NM_012018	ENSMUSG00000057110	Cntrl	6720467O09Rik|AA968343|Cep1|Cep110|IB3/5|Ma2a8|b2b1468.1Clo|b2b1468Clo	centriolin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-37448438-4	chr19	37448327	37448527	+	894.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13586.0	NM_008245	15242.0	Mm.33896	NM_008245	ENSMUSG00000024986	Hhex	Hex|Hex1|Hhex-rs2|Prh|Prhx	hematopoietically expressed homeobox	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124743060-2	chr6	124742960	124743160	+	955.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007881, exon 10 of 10)	3' UTR (NM_007881, exon 10 of 10)	-1981.0	NM_013535	14790.0	Mm.439877	NM_013535	ENSMUSG00000072772	Grcc10	2310033H05Rik|C10	gene rich cluster, C10 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-28517956-4	chr16	28517883	28518083	+	939.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010199, intron 2 of 5)	intron (NM_010199, intron 2 of 5)	46512.0	NM_001357064	14167.0	Mm.7996	NM_010199	ENSMUSG00000022523	Fgf12	AV114868|B230343J05Rik|FGF-12|FHF-1|Fhf1	fibroblast growth factor 12	protein-coding	-1.20406370813143	-1.56956373024278	-1.57884638916872	-1.58647144159385	-1.598104728449	-1.56755213932999	-1.57674499865798	-1.58510656085539	-1.70745470802464	0.626337835847419	1
Merged-chr4-130912382-4	chr4	130912295	130912495	+	901.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010686)	promoter-TSS (NM_010686)	-939.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-94352255-2	chr11	94352155	94352355	+	845.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029600, intron 26 of 30)	intron (NM_029600, intron 26 of 30)	24254.0	NM_146024	71452.0	Mm.141054	NM_027799	ENSMUSG00000020864	Ankrd40	1110011C06Rik|5530600A18Rik|Gcap15	ankyrin repeat domain 40	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-137748720-6	chr5	137748677	137748877	+	872.013916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023910, intron 2 of 4)	intron (NM_023910, intron 2 of 4)	2808.0	NM_029805	78829.0	Mm.286399	NM_023910	ENSMUSG00000029723	Tsc22d4	0610009M14Rik|1700023B23Rik|AI415410|Thg-1pit|Tilz2	TSC22 domain family, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122770984-3	chr5	122770891	122771091	+	948.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199676, intron 1 of 16)	intron (NM_001199676, intron 1 of 16)	8419.0	NM_001199676	207565.0	Mm.289237	NM_145358	ENSMUSG00000029471	Camkk2	6330570N16Rik|AW061083|mKIAA0787	calcium/calmodulin-dependent protein kinase kinase 2, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19361942-4	chr7	19361850	19362050	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001010836, intron 1 of 12)	intron (NM_001010836, intron 1 of 12)	734.0	NM_001010836	333654.0	Mm.333640	NM_001010836	ENSMUSG00000040734	Ppp1r13l	AV260376|IASPP|Nkip1|wa3	protein phosphatase 1, regulatory (inhibitor) subunit 13 like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-32540567-2	chr11	32540467	32540667	+	618.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 1 of 18)	(GGGTG)n|Simple_repeat|Simple_repeat	7301.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-34495486-2	chr4	34495392	34495592	+	1000.0	f0_balb.idr|f0_c57.idr	Intergenic	ID_B1|SINE|B4	-55123.0	NM_001007589	433693.0	Mm.389532	NM_026019	ENSMUSG00000028291	Akirin2	2700059D21Rik|AA114675|AA522011|AU019887|Akirin-2	akirin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-89384848-4	chr13	89384734	89384934	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR44B|LTR|ERVK	-155802.0	NM_013500	12950.0	Mm.266790	NM_013500	ENSMUSG00000021613	Hapln1	BB099155|CLP|Crtl1|Crtl1l|LP|LP-1	hyaluronan and proteoglycan link protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-107368050-2	chr8	107367950	107368150	+	871.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_133957, exon 14 of 16)	exon (NM_133957, exon 14 of 16)	35155.0	NM_008706	18104.0	Mm.252	NM_008706	ENSMUSG00000003849	Nqo1	AV001255|Dia4|Dtd|Nmo-1|Nmo1|Nmor1|Ox-1|Ox1|Qr1	NAD(P)H dehydrogenase, quinone 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-39118228-4	chr6	39118086	39118286	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045813)	promoter-TSS (NR_045813)	163.0	NM_172893	243771.0	Mm.268462	NM_172893	ENSMUSG00000038507	Parp12	9930021O16|AA409132|AA536654|ARTD12|PARP-12|Zc3hdc1	poly (ADP-ribose) polymerase family, member 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-136490382-1	chr3	136490282	136490482	+	543.0	f1_c57bl6.idr	Intergenic	Lx3_Mus|LINE|L1	-41033.0	NR_040592	70055.0	Mm.261063	NR_040592	ENSMUSG00000099508	1700030L20Rik	-	RIKEN cDNA 1700030L20 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-143945595-2	chr2	143945495	143945695	+	640.400024	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30264.0	NM_019771	56431.0	Mm.28919	NM_019771	ENSMUSG00000015932	Dstn	2610043P17Rik|ADF|AU042046|Dsn|corn1|sid23p	destrin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-93988689-3	chr11	93988570	93988770	+	743.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7421.0	NM_001199203	70834.0	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	2.12354776714555	1.05114544275279	3.02235983152029	1.46445550773224	1.39512179459185	1.58185023697081	1.02763728871416	2.35756816194639	-1.08118151410301	0.349946155265198	0.850386723313101
Merged-chr8-6352073-2	chr8	6351973	6352173	+	593.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2B|LINE|L1	-1246786.0	NM_011388	20494.0	Mm.3500	NM_011388	ENSMUSG00000023073	Slc10a2	9130221J18Rik|AI605518|ASBT|IBAT|ISBT	solute carrier family 10, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-130906473-4	chr2	130906364	130906564	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009730)	promoter-TSS (NM_009730)	-31.0	NM_009730	11990.0	Mm.119936	NM_009730	ENSMUSG00000027312	Atrn	AW558010|Mgca|mg	attractin	protein-coding	3.39370484233257	3.63569709485979	4.16099304143718	3.93360377894805	4.08616675259542	4.48647618762149	3.09178653250456	4.4116291171258	0.429903663490441	0.38914905438178	0.878578793881975
Merged-chr4-34551362-7	chr4	34551272	34551472	+	952.0979609999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001007589, intron 1 of 4)	intron (NM_001007589, intron 1 of 4)	757.0	NM_001007589	433693.0	Mm.389532	NM_026019	ENSMUSG00000028291	Akirin2	2700059D21Rik|AA114675|AA522011|AU019887|Akirin-2	akirin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26839318-2	chr17	26839218	26839418	+	650.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008700, exon 2 of 2)	exon (NM_008700, exon 2 of 2)	2247.0	NM_008700	18091.0	Mm.41974	NM_008700	ENSMUSG00000015579	Nkx2-5	Csx|Nkx-2.5|Nkx2.5|tinman	NK2 homeobox 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-36633265-4	chr16	36633170	36633370	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019388, intron 1 of 7)	intron (NM_019388, intron 1 of 7)	32807.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84872200-4	chr8	84872163	84872363	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001168244)	promoter-TSS (NM_001168244)	5.0	NM_001168244	71846.0	Mm.229128	NM_027954	ENSMUSG00000003824	Syce2	1700013H19Rik|AA407907|Cesc1	synaptonemal complex central element protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-119436036-1	chr9	119435936	119436136	+	655.5	f0_balb.idr	3' UTR (NM_001313757, exon 11 of 11)	3' UTR (NM_001313757, exon 11 of 11)	-8924.0	NR_153320	208194.0	Mm.101578	NM_172456	ENSMUSG00000042787	Exog	AW557704|ENGL-B|ENGL-a|Endogl1|Endogl2|Engl|Engla|Englb	endo/exonuclease (5'-3'), endonuclease G-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-56370816-3	chr8	56370712	56370912	+	884.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	76260.0	NM_008278	15446.0	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4303148-2	chr19	4303048	4303248	+	770.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290818, intron 1 of 20)	intron (NM_001290818, intron 1 of 20)	3074.0	NM_130863	110355.0	Mm.254144	NM_130863	ENSMUSG00000024858	Grk2	Adrbk-1|Adrbk1|Bark-1|beta ARK|betaARK1	G protein-coupled receptor kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105758666-4	chr8	105758567	105758767	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027469)	promoter-TSS (NM_027469)	-60.0	NM_027469	70575.0	Mm.40954	NM_027469	ENSMUSG00000013150	Gfod2	5730466C23Rik	glucose-fructose oxidoreductase domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-13010950-2	chr10	13010850	13011050	+	602.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	2500.0	NM_175102	66125.0	Mm.29743	NM_175102	ENSMUSG00000078348	Sf3b5	10kDa|1110005L13Rik|AU043053|Sf3b10	splicing factor 3b, subunit 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-59318900-2	chr2	59318800	59319000	+	647.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 10 of 20)	B3|SINE|B2	67782.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-25569011-2	chr15	25568911	25569111	+	678.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53539.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-173024142-2	chr2	173024042	173024242	+	792.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019547, intron 3 of 3)	intron (NM_019547, intron 3 of 3)	2240.0	NM_019547	56190.0	Mm.485782	NM_019547	ENSMUSG00000027510	Rbm38	Rnpc1|Seb4|Seb4l	RNA binding motif protein 38	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-120077183-3	chr6	120077088	120077288	+	941.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR33|LTR|ERVK	-16192.0	NM_016718	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-80373729-2	chr12	80373629	80373829	+	831.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_177267, intron 6 of 8)	intron (NM_177267, intron 6 of 8)	17948.0	NR_037207	100526530.0		NR_037207	ENSMUSG00000105972	Mir1843a	Mir1843|mir-1843a|mmu-mir-1843|mmu-mir-1843a	microRNA 1843a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116533776-2	chr11	116533676	116533876	+	678.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011451)	promoter-TSS (NM_011451)	538.0	NM_025367	20698.0	Mm.20944	NM_011451	ENSMUSG00000061878	Sphk1	1110006G24Rik|Sk1|Spk1	sphingosine kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-18680251-3	chr16	18680146	18680346	+	871.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA5A|LINE|L1	-50308.0	NM_213614	18951.0	Mm.20365	NM_213614	ENSMUSG00000072214	Sept5	Cdcrel-1|Cdcrel1|Pnutl1	septin 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-58260779-3	chr15	58260688	58260888	+	944.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45896.0	NM_026346	67731.0	Mm.25683	NM_026346	ENSMUSG00000022358	Fbxo32	4833442G10Rik|AI430017|ATROGIN1|Gm20361|MAFbx	F-box protein 32	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33400385-4	chr16	33400276	33400476	+	977.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358569)	promoter-TSS (NM_001358569)	-69.0	NM_001358569	22661.0	Mm.392667	NM_011749	ENSMUSG00000022811	Zfp148	2210405J08Rik|AI480666|AW045217|BERF-1|BFCOL1|ZBP-89|Znf148	zinc finger protein 148	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120349040-4	chr11	120348940	120349140	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001313923)	promoter-TSS (NM_001313923)	362.0	NR_038126	66838.0	Mm.375010	NR_038126	ENSMUSG00000043644	0610009L18Rik	-	RIKEN cDNA 0610009L18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-96374384-4	chr10	96374285	96374485	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MCa|LINE|L1	148178.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-23135612-4	chr19	23135514	23135714	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-5612.0	NM_010638	16601.0	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|Gm9971	Kruppel-like factor 9	protein-coding	4.49701160891215	3.57462475352647	3.9531563240702	4.93097899920766	4.21925236917046	3.37385628738298	3.75472925040681	4.11302464201696	-0.582280724169274	0.226106765165654	0.718820606374539
Merged-chr11-30900533-3	chr11	30900432	30900632	+	887.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	15174.0	NM_175490	237716.0	Mm.338361	NM_175490	ENSMUSG00000043999	Gpr75	-	G protein-coupled receptor 75	protein-coding	3.25215534919775	3.86390768479789	3.97021598161972	3.8649044082602	1.98057975965436	2.01454524945996	2.72237855911128	3.8302788131455	-1.36473799645163	0.0450860349055227	0.305272148305001
Merged-chr10-17623925-1	chr10	17623825	17624025	+	661.0	f1_balb.idr	Intergenic	Intergenic	-99303.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	-1.84303373260285	-1.81303463126392	-1.82210660711932	-1.82955859819738	-1.84092785115721	-1.81106869625141	-1.8200529106377	-1.54273750312762	1.50114612804783	0.670102668014672	1
Merged-chr15-50997280-4	chr15	50997179	50997379	+	618.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-107238.0	NM_032000	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	1.25550408130239	1.54977478299871	1.93550289523851	0.956721773851928	1.50866420487598	1.69907424366401	1.18349246081737	1.58679991544943	0.0825717943786098	0.945196978608585	0.998431161219273
Merged-chr3-9897218-4	chr3	9897111	9897311	+	891.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	-63532.0	NM_001195031	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	1.69028863842986	1.75369459021262	2.42132755564878	2.19234456983841	1.57878685642014	1.39046336297393	1.11751332299662	1.79128443543446	-1.68434951867345	0.11660578946202	0.534799794329251
Merged-chr17-93674533-2	chr17	93674433	93674633	+	804.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	475365.0	NM_009625	11516.0	Mm.3407	NM_009625	ENSMUSG00000024256	Adcyap1	PACAP	adenylate cyclase activating polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-54869400-2	chr11	54869300	54869500	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008248, intron 1 of 2)	ORR1B1|LTR|ERVL-MaLR	3017.0	NM_008248	15254.0	Mm.425	NM_008248	ENSMUSG00000020267	Hint1	AA673479|Hint|Ipk1|PKCI-1|PRKCNH1	histidine triad nucleotide binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126517357-4	chr8	126517261	126517461	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42296.0	NM_001159907	212728.0	Mm.482479	NM_001159907	ENSMUSG00000090290	Tarbp1	Gm17296|Gm179	TAR RNA binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-117288141-4	chr4	117288054	117288254	+	807.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310730, intron 2 of 10)	MIRb|SINE|MIR	1301.0	NM_001310730	66743.0	Mm.318331	NM_025739	ENSMUSG00000028677	Rnf220	4732477A13|4931406I20Rik|5730503K05Rik|AV302541	ring finger protein 220	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-110460081-2	chr9	110459981	110460181	+	545.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360306, intron 1 of 9)	intron (NM_001360306, intron 1 of 9)	16613.0	NM_001360306	270201.0	Mm.41744	NM_177771	ENSMUSG00000054792	Klhl18	A930041K15|AW545966	kelch-like 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180811250-4	chr1	180811132	180811332	+	911.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008210, intron 2 of 3)	intron (NM_008210, intron 2 of 3)	2373.0	NM_008210	15078.0	Mm.138832	NM_008210	ENSMUSG00000060743	H3f3a	EyeLinc14|H3.3A	H3 histone, family 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-8985552-2	chr19	8985635	8985835	+	918.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-3549.0	NR_104460	66395.0	Mm.203866	NM_009643	ENSMUSG00000069833	Ahnak	DY6	AHNAK nucleoprotein (desmoyokin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-61931202-2	chr11	61931102	61931302	+	944.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019921)	promoter-TSS (NM_019921)	-945.0	NM_019921	56697.0	Mm.274404	NM_019921	ENSMUSG00000047804	Akap10	1500031L16Rik|B130049N18Rik|D-AKAP-2|D-AKAP2|PRKA10	A kinase (PRKA) anchor protein 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-4858944-2	chr1	4858844	4859044	+	580.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159751, intron 1 of 9)	intron (NM_001159751, intron 1 of 9)	616.0	NM_001159751	21399.0	Mm.207263	NM_011541	ENSMUSG00000033813	Tcea1	S-II	transcription elongation factor A (SII) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-10963118-2	chr16	10963018	10963218	+	726.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019980, intron 3 of 3)	intron (NM_019980, intron 3 of 3)	30003.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-12033935-4	chr2	12033762	12033962	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	256109.0	NM_177268	320816.0	Mm.260201	NM_177268	ENSMUSG00000047909	Ankrd16	2810455F06Rik|AI646698|D430029B21Rik	ankyrin repeat domain 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-43253248-2	chr16	43253148	43253348	+	737.799988	f1_balb.idr|f1_c57bl6.idr	intron (NM_181058, intron 1 of 6)	intron (NM_181058, intron 1 of 6)	5964.0	NM_019778	56490.0	Mm.136238	NM_019778	ENSMUSG00000022708	Zbtb20	1300017A20Rik|7330412A13Rik|A930017C21Rik|D16Wsu73e|DPZF|HOF|J20|ODA-8S|Oda8|Tg(PDGFB-APPSwInd)20Lms|Zfp288	zinc finger and BTB domain containing 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-33912756-4	chr1	33912654	33912854	+	971.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276764, intron 2 of 102)	intron (NM_001276764, intron 2 of 102)	4529.0	NM_001276764	13518.0	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-142831505-3	chr6	142831415	142831615	+	819.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045707, intron 6 of 6)	intron (NR_045707, intron 6 of 6)	17284.0	NR_045707	665037.0	Mm.401493	NR_045707	ENSMUSG00000072683	Gm7457	EG665037	predicted gene 7457	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-61522308-2	chr8	61522208	61522408	+	623.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001293772, intron 18 of 21)	intron (NM_001293772, intron 18 of 21)	34574.0	NM_145595	234309.0	Mm.29059	NM_145595	ENSMUSG00000031641	Cbr4	A730083J17Rik|BC009118	carbonyl reductase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-100839433-4	chr12	100839325	100839525	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145448, intron 4 of 12)	intron (NM_145448, intron 4 of 12)	60099.0	NM_001177674	238377.0	Mm.32160	NM_175493	ENSMUSG00000047415	Gpr68	BB131428|Ogr1	G protein-coupled receptor 68	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-99614548-2	chr12	99614448	99614648	+	631.333374	f1_balb.idr|f1_c57bl6.idr	intron (NR_136760, intron 2 of 3)	intron (NR_136760, intron 2 of 3)	13426.0	NR_045288	73457.0	Mm.383439	NR_045288	ENSMUSG00000100211	1700064M15Rik	-	RIKEN cDNA 1700064M15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-4653990-4	chr7	4653881	4654081	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172894, intron 1 of 23)	intron (NM_172894, intron 1 of 23)	4969.0	NM_172894	243819.0	Mm.258670	NM_172894	ENSMUSG00000052296	Ppp6r1	2010309P17Rik|AI836219|B430201G11Rik|D030074N20Rik|Pp6r1|Saps1|mKIAA1115	protein phosphatase 6, regulatory subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-149836187-4	chr4	149836100	149836300	+	923.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB7|LINE|L1	-61933.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-78916597-4	chr11	78916487	78916687	+	906.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4200.0	NM_010927	18126.0	Mm.2893	NM_010927	ENSMUSG00000020826	Nos2	MAC-NOS|NOS-II|Nos-2|Nos2a|i-NOS|iNOS	nitric oxide synthase 2, inducible	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-19355617-1	chr9	19355517	19355717	+	656.0	f1_c57bl6.idr	Intergenic	L1_Mus1|LINE|L1	5739.0	NM_146282	258279.0	Mm.377410	NM_146282	ENSMUSG00000058692	Olfr846	MOR149-3	olfactory receptor 846	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-14360074-1	chr16	14359974	14360174	+	1000.0	f1_balb.idr	Intergenic	Intergenic	-1484.0	NM_008576	17250.0	Mm.196634	NM_008576	ENSMUSG00000023088	Abcc1	Abcc1a|Abcc1b|MRP|Mdrap|Mrp1	ATP-binding cassette, sub-family C (CFTR/MRP), member 1	protein-coding	-0.10129403594322	0.888449436571122	-0.0841680231382033	-0.0905353608562804	-0.0996781901533225	0.903496030457706	-0.0823628092250997	-0.0894170162904303	0.0395142251790123	0.986378381761409	1
Merged-chr1-85935719-2	chr1	85935619	85935819	+	708.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	7236.0	NR_037692	71141.0	Mm.314965	NR_037692	ENSMUSG00000026224	4933407L21Rik	-	RIKEN cDNA 4933407L21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126882484-4	chr8	126882396	126882596	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	33476.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35737548-1	chr17	35737448	35737648	+	792.0	f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-32949.0	NM_007584	12305.0	Mm.5021	NM_007584	ENSMUSG00000003534	Ddr1	6030432F18|AI323681|CD167a|Cak|Nep|PTK3A	discoidin domain receptor family, member 1	protein-coding	0.243103746495781	0.710774253983123	0.773761675394717	0.959930646145265	0.244041441333527	0.25946466590461	0.254397557121261	0.250110214034651	-4.27409890439363	0.0359090070133146	1
Merged-chr10-128892101-2	chr10	128892001	128892201	+	706.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010272)	promoter-TSS (NM_010272)	-383.0	NM_010272	14561.0	Mm.299218	NM_010272	ENSMUSG00000025352	Gdf11	BMP-11|Bmp11	growth differentiation factor 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-58935649-2	chr15	58935549	58935749	+	648.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023172, intron 1 of 3)	AT_rich|Low_complexity|Low_complexity	1839.0	NM_023172	66218.0	Mm.322294	NM_023172	ENSMUSG00000022354	Ndufb9	1190008J14Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5797543-4	chr17	5797438	5797638	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1119.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-71028065-2	chr2	71027965	71028165	+	792.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145524, intron 1 of 9)	B4A|SINE|B4	-9691.0	NM_001110512	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-31270113-3	chr3	31269996	31270196	+	736.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172861, intron 1 of 7)	L2|LINE|L2	40223.0	NM_172861	241919.0	Mm.285366	NM_172861	ENSMUSG00000069072	Slc7a14	A930013N06|BC061928	solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-158624894-4	chr2	158624793	158624993	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175419)	promoter-TSS (NM_175419)	-20.0	NM_175419	109275.0	Mm.27747	NM_175419	ENSMUSG00000037761	Actr5	AA545173|B430109J19Rik	ARP5 actin-related protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-86823366-3	chr4	86823269	86823469	+	697.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_184088, intron 21 of 31)	B3|SINE|B2	33998.0	NM_009096	20104.0	Mm.379007	NM_009096	ENSMUSG00000028495	Rps6	S6R	ribosomal protein S6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-33039607-4	chr5	33039497	33039697	+	869.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20781.0	NM_011738	22629.0	Mm.332314	NM_011738	ENSMUSG00000018965	Ywhah	-	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-92668761-4	chr13	92668654	92668854	+	900.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172588, intron 2 of 11)	MLT1A1|LTR|ERVL-MaLR	57616.0	NM_172588	218442.0	Mm.297970	NM_172588	ENSMUSG00000021703	Serinc5	A130038L21Rik|AIGP3|C86123|TPO1	serine incorporator 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-33904363-4	chr1	33904263	33904463	+	827.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177235, intron 1 of 6)	B4|SINE|B4	3258.0	NM_177235	320705.0	Mm.336619	NM_177235	ENSMUSG00000042182	Bend6	B230209C24Rik	BEN domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-145250000-1	chr7	145249900	145250100	+	622.0	f1_c57bl6.idr	intron (NR_132644, intron 24 of 24)	intron (NR_132644, intron 24 of 24)	34011.0	NR_132644	233979.0	Mm.102235	NM_146206	ENSMUSG00000048677	Tpcn2	D830047E22Rik|Gm35086	two pore segment channel 2	protein-coding	-0.126947573854553	-0.255795380455327	-0.26029034293106	0.449629361507877	0.210315822054967	-0.254781676204421	-0.259299236633709	-0.263150752005142	-0.951182719268154	0.696063465098812	1
Merged-chr6-26304411-4	chr6	26304309	26304509	+	985.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19C|LTR|ERVK	372983.0	NR_040771	626904.0	Mm.126787	NR_040771	ENSMUSG00000106799	Gm20756	-	predicted gene, 20756	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-102860903-1	chr13	102860803	102861003	+	802.0	f0_balb.idr	intron (NM_175171, intron 4 of 28)	L2a|LINE|L2	100648.0	NR_130171	76624.0	Mm.426384	NR_130171	ENSMUSG00000091906	1700099I09Rik	-	RIKEN cDNA 1700099I09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-57755409-3	chr10	57755305	57755505	+	885.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29518.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-77551131-4	chr10	77551025	77551225	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008404, intron 8 of 15)	intron (NM_008404, intron 8 of 15)	20777.0	NM_008404	16414.0	Mm.1137	NM_008404	ENSMUSG00000000290	Itgb2	2E6|AI528527|Cd18|LAD|LCAMB|Lfa1|MF17	integrin beta 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102281017-2	chr12	102280917	102281117	+	689.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2057.0	NM_177620	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-133075798-4	chr3	133075695	133075895	+	904.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356309, intron 3 of 11)	B4A|SINE|B4	16030.0	NM_026231	67553.0	Mm.304899	NM_026231	ENSMUSG00000028018	Gstcd	4933434L15Rik	glutathione S-transferase, C-terminal domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-65119548-3	chr1	65119432	65119632	+	655.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175293, intron 3 of 7)	intron (NM_175293, intron 3 of 7)	3682.0	NM_175293	98303.0	Mm.348057	NM_175293	ENSMUSG00000044816	D630023F18Rik	AI314969	RIKEN cDNA D630023F18 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-22007984-3	chr10	22007886	22008086	+	873.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13320.0	NM_011361	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115173676-4	chr11	115173604	115173804	+	838.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012030, intron 1 of 5)	intron (NM_012030, intron 1 of 5)	10363.0	NM_012030	26941.0	Mm.27842	NM_012030	ENSMUSG00000020733	Slc9a3r1	EBP-50|NHE-RF|NHERF-1|NHERF1	solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34242360-2	chr17	34242261	34242461	+	875.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_010389, intron 2 of 5)	intron (NM_010389, intron 2 of 5)	3456.0	NM_010389	15002.0	Mm.327358	NM_010389	ENSMUSG00000041538	H2-Ob	A-beta-2|A-beta2|H-2Ab|H-2I|H-2Ob|H2-Ab|H2-Ab2|H2-IAb2|Ob	histocompatibility 2, O region beta locus	protein-coding	3.54985663905862	3.05849507324302	3.11523636989495	2.02327643404615	1.92670171940446	2.88619666085865	1.90726277886851	1.34102683882815	-1.76808463526217	0.0402228202693174	0.286009520500555
Merged-chr11-95042307-4	chr11	95042202	95042402	+	983.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133667)	promoter-TSS (NM_133667)	-931.0	NM_133667	18604.0	Mm.29768	NM_133667	ENSMUSG00000038967	Pdk2	-	pyruvate dehydrogenase kinase, isoenzyme 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-51533611-4	chr6	51533528	51533728	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361581, intron 1 of 6)	intron (NM_001361581, intron 1 of 6)	9368.0	NM_001361580	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80145485-6	chr10	80145293	80145493	+	913.361084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025313, intron 3 of 3)	intron (NM_025313, intron 3 of 3)	-2879.0	NM_001305798	59090.0	Mm.143813	NM_021565	ENSMUSG00000035621	Midn	3000003C15Rik	midnolin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-40224973-4	chr1	40224890	40225090	+	936.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008362)	promoter-TSS (NM_008362)	-90.0	NM_008362	16177.0	Mm.896	NM_008362	ENSMUSG00000026072	Il1r1	CD121a|CD121b|IL-1R1|IL-iR|Il1r-1	interleukin 1 receptor, type I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-103311364-2	chr15	103311266	103311466	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030720)	promoter-TSS (NM_030720)	-928.0	NM_030720	80910.0	Mm.160369	NM_030720	ENSMUSG00000063234	Gpr84	EX33	G protein-coupled receptor 84	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-80329688-2	chr8	80329588	80329788	+	585.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-164357.0	NM_010369	14934.0	Mm.13123	NM_010369	ENSMUSG00000051839	Gypa	AI853584|CD235a|GPA	glycophorin A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141316127-2	chr7	141316027	141316227	+	670.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001282072, intron 6 of 12)	intron (NM_001282072, intron 6 of 12)	11598.0	NM_016874	54006.0	Mm.28392	NM_016874	ENSMUSG00000058886	Deaf1	AU042387|C230009B13Rik|NUDR	DEAF1, transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127921724-4	chr7	127921613	127921813	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360699, intron 5 of 10)	intron (NM_001360699, intron 5 of 10)	8400.0	NM_133351	76560.0	Mm.5875	NM_133351	ENSMUSG00000030800	Prss8	2410039E18Rik|AI313909|C79772|CAP1|fr|mCAP1	protease, serine 8 (prostasin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-52527832-2	chr18	52527732	52527932	+	713.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286182, intron 3 of 7)	intron (NM_001286182, intron 3 of 7)	1889.0	NM_001286181	16948.0	Mm.172	NM_010728	ENSMUSG00000024529	Lox	AI893619|TSC-160|rrg	lysyl oxidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-121833879-7	chr5	121833921	121834121	+	961.292542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001306127, intron 1 of 8)	intron (NM_001306127, intron 1 of 8)	2083.0	NM_001306126	16923.0	Mm.65493	NM_008507	ENSMUSG00000042594	Sh2b3	AI429800|Lnk	SH2B adaptor protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-14932093-2	chr9	14931993	14932193	+	605.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28142.0	NM_022888	64931.0	Mm.86738	NM_022888	ENSMUSG00000031933	Izumo1r	0910001L11Rik|C86255|Folbp3|Folr4|Juno	IZUMO1 receptor, JUNO	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-100849294-4	chr13	100849225	100849425	+	901.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-15898.0	NM_022885	69048.0	Mm.402215	NM_022885	ENSMUSG00000021629	Slc30a5	1810010K08Rik|AF233321|ZNT5|ZTL1|ZnT-5|Zntl1	solute carrier family 30 (zinc transporter), member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-128549699-4	chr1	128549626	128549826	+	851.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	42573.0	NM_009911	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	2.83038065349178	2.93195976736311	3.08738101414135	3.54917542731661	3.71456855245292	4.19427795935894	3.67830499336015	4.23946463876313	1.28222281836496	0.0156438696264385	0.14983646709261
Merged-chr3-100533846-2	chr3	100533755	100533955	+	631.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44663.0	NM_001142952	74645.0	Mm.226900	NM_001142952	ENSMUSG00000044468	Fam46c	4930431B09Rik|AI449797	family with sequence similarity 46, member C	protein-coding	-0.164315735959918	-0.142098050422704	0.906945612377882	-0.154881454922562	-0.162901628427536	0.580134902170731	-0.14768596529646	-0.153898268945257	-0.813484134892821	0.733196430579628	1
Merged-chr5-125313488-3	chr5	125313424	125313624	+	902.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205083, intron 1 of 10)	MTEb|LTR|ERVL-MaLR	27570.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	3.51086195700551	3.41049466810626	2.29192499555585	3.41177742659192	2.413108345162	2.71292620299377	2.62122598643746	2.66517397527053	-1.16534608766585	0.0877350631858327	0.455488286273391
Merged-chr7-118796952-4	chr7	118796858	118797058	+	946.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027815, intron 18 of 30)	intron (NM_027815, intron 18 of 30)	56687.0	NM_027815	71517.0	Mm.213298	NM_027815	ENSMUSG00000030982	9030624J02Rik	2610029J22Rik	RIKEN cDNA 9030624J02 gene	protein-coding	1.54934762611738	1.56490045938169	1.92701770860067	1.10039612750494	2.26733411140712	1.5754552472949	1.68510931744396	1.98529518846884	1.06062158378622	0.329322254200014	0.831942889324137
Merged-chr12-85454169-3	chr12	85454064	85454264	+	822.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19726.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135268055-2	chr4	135267955	135268155	+	613.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013885, intron 1 of 5)	B1F|SINE|Alu	4705.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-39414446-2	chr10	39414346	39414546	+	769.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001122892, intron 2 of 12)	intron (NM_001122892, intron 2 of 12)	44647.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-145998238-3	chr2	145998125	145998325	+	938.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	63441.0	NM_175280	78774.0	Mm.136347	NM_175280	ENSMUSG00000037143	Cfap61	4930529M08Rik|BB178539|BC024760	cilia and flagella associated protein 61	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171840615-4	chr1	171840516	171840716	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001252472, exon 2 of 3)	5' UTR (NM_001252472, exon 2 of 3)	919.0	NM_013489	12523.0	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	1.92739124229663	0.94147685383782	0.910544945887707	0.681973278054679	0.665958937815219	0.948349776929754	1.38748926535302	1.44812900749173	-0.30262825130417	0.834640959733475	0.998431161219273
Merged-chr8-70675385-1	chr8	70675285	70675485	+	806.0	f1_balb.idr	intron (NM_015816, intron 1 of 4)	intron (NM_015816, intron 1 of 4)	2154.0	NM_015816	50783.0	Mm.248188	NM_015816	ENSMUSG00000031848	Lsm4	-	LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	0.762526057899727	2.14302229033482	0.803187844500523	1.61096263480421	1.14171459813314	1.87093444529969	1.41288088192404	0.790876349815519	-0.343127686917081	0.806062636748037	0.998431161219273
Merged-chr7-72303710-1	chr7	72303610	72303810	+	656.5	f0_balb.idr	intron (NM_001024703, intron 1 of 22)	Arthur1C|DNA|hAT-Tip100	2885.0	NM_001024703	244049.0	Mm.217412	NM_001024703	ENSMUSG00000032776	Mctp2	Gm489	multiple C2 domains, transmembrane 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81441301-2	chr10	81441201	81441401	+	623.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14128.0	NM_026756	18029.0	Mm.426936	NM_008688	ENSMUSG00000055053	Nfic	1110019L22Rik|1500041O16Rik|AA589446|AI746521|NF1-C	nuclear factor I/C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45059860-2	chr7	45059760	45059960	+	807.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_022999, intron 4 of 6)	intron (NM_022999, intron 4 of 6)	1792.0	NM_022999	65116.0	Mm.379098	NM_022999	ENSMUSG00000007837	Prrg2	1600014G02Rik|2510041M06Rik|N4WBP1	proline-rich Gla (G-carboxyglutamic acid) polypeptide 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-103749733-2	chr5	103749633	103749833	+	968.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4429.0	NM_133919	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-23782095-1	chr19	23781995	23782195	+	584.0	f0_balb.idr	intron (NM_177034, intron 1 of 12)	intron (NM_177034, intron 1 of 12)	23219.0	NM_177034	319924.0	Mm.22879	NM_177034	ENSMUSG00000024897	Apba1	6430513E09Rik|Lin-10|Mint|Mint1|Urop11|X11|X11alpha	amyloid beta (A4) precursor protein binding, family A, member 1	protein-coding	1.11031012560881	1.15418304812671	0.813819337541553	0.617358667016818	1.45209281555577	0.84553006163124	0.627134436361907	1.0769342624924	0.480598040255079	0.749268921890562	0.998431161219273
Merged-chr12-12295136-7	chr12	12295056	12295256	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029758, intron 2 of 12)	intron (NM_029758, intron 2 of 12)	33017.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-74949086-4	chr14	74949000	74949200	+	952.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1223.0	NM_001033439	380916.0	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-75005487-2	chr17	75005387	75005587	+	741.166687	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019919)	promoter-TSS (NM_019919)	-42.0	NM_019919	268977.0	Mm.269747	NM_019919	ENSMUSG00000001870	Ltbp1	9430031G15Rik|9830146M04|Ltbp-1|Ltbp1L|TGF-beta1-BP-1|Tgfb|b2b1000Clo	latent transforming growth factor beta binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53043162-2	chr4	53043062	53043262	+	651.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 40 of 49)	intron (NM_013454, intron 40 of 49)	31282.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-100926405-4	chr12	100926288	100926488	+	876.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026681, intron 25 of 29)	intron (NM_026681, intron 25 of 29)	-18190.0	NM_001177673	238377.0	Mm.32160	NM_175493	ENSMUSG00000047415	Gpr68	BB131428|Ogr1	G protein-coupled receptor 68	protein-coding	1.80751474786643	2.27672570305862	1.21670287551381	2.02528854690172	2.13466541806362	2.04209426506321	2.4992344057519	1.42715799634773	0.508474778209693	0.619144691844669	0.978377997991791
Merged-chr9-32540240-4	chr9	32540139	32540339	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008026, intron 1 of 8)	intron (NM_008026, intron 1 of 8)	1213.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81190880-4	chr15	81190785	81190985	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015603)	promoter-TSS (NR_015603)	32.0	NR_015603	67638.0	Mm.390832	NM_026288	ENSMUSG00000047938	4930483J18Rik	-	RIKEN cDNA 4930483J18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-141797010-2	chr6	141796910	141797110	+	572.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	59210.0	NM_030687	28250.0	Mm.255586	NM_030687	ENSMUSG00000030237	Slco1a4	AI785519|Oatp1a4|Oatp2|Slc21a5	solute carrier organic anion transporter family, member 1a4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-84870848-4	chr11	84870733	84870933	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_131197)	promoter-TSS (NR_131197)	-90.0	NR_131197	102635561.0	Mm.341797	NR_131197		Ggnbp2os	-	gametogenetin binding protein 2, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91610476-2	chr16	91610376	91610576	+	858.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	8523.0	NM_001099738	246738.0	Mm.101927	NM_138664	ENSMUSG00000039763	Dnajc28	BC020175|ORF28	DnaJ heat shock protein family (Hsp40) member C28	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-167306636-4	chr1	167306524	167306724	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-2046.0	NM_001039483	68944.0	Mm.330045	NM_026881	ENSMUSG00000052428	Tmco1	1190006A08Rik|4930403O06Rik|AA109065|AU022572|ESTM39	transmembrane and coiled-coil domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19713209-2	chr7	19713109	19713309	+	571.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001109748, intron 3 of 8)	PB1D10|SINE|Alu	2220.0	NM_001109748	53333.0	Mm.61682	NM_016871	ENSMUSG00000002984	Tomm40	AW539759|Mom35|Tom40	translocase of outer mitochondrial membrane 40	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-121998432-2	chr14	121998332	121998532	+	685.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026861, intron 7 of 8)	intron (NM_026861, intron 7 of 8)	-33239.0	NM_183031	321019.0	Mm.265618	NM_183031	ENSMUSG00000051212	Gpr183	Ebi2	G protein-coupled receptor 183	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-90632156-2	chr3	90632056	90632256	+	825.799988	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19262.0	NM_011313	20200.0	Mm.100144	NM_011313	ENSMUSG00000001025	S100a6	2A9|5B10|CALCYCLIN|Cacy|PRA	S100 calcium binding protein A6 (calcyclin)	protein-coding	2.45976825367991	3.32413697232297	2.78819613746876	2.48633284439092	3.11365580913997	3.27313811871841	1.41905934520961	1.37618900568688	-0.37789806624367	0.681331264712355	0.995882295196263
Merged-chr1-80646808-4	chr1	80646715	80646915	+	902.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175291, intron 2 of 55)	intron (NM_175291, intron 2 of 55)	18537.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-93263661-3	chr10	93263523	93263723	+	992.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001282967, intron 2 of 3)	intron (NM_001282967, intron 2 of 3)	47536.0	NM_001322268	13713.0	Mm.4454	NM_013508	ENSMUSG00000008398	Elk3	D430049E23Rik|Erp|Etrp|Net|Sap-2	ELK3, member of ETS oncogene family	protein-coding	3.72428940637693	1.8641486211084	3.01702618205997	3.86360516427799	4.27175899061838	3.83364274812657	5.21292965165726	5.23001580211899	1.91059435907905	0.000716873141842232	0.0148806988855071
Merged-chr17-33998799-5	chr17	33998667	33998867	+	903.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001892, intron 3 of 7)	intron (NM_001001892, intron 3 of 7)	1566.0	NM_001001892	14972.0	Mm.422886	NM_001001892	ENSMUSG00000061232	H2-K1	H-2K|H-2K(d)|H2-K|K-f	histocompatibility 2, K1, K region	protein-coding	3.56543012493859	3.18983274920606	4.43478139353542	3.6314502235296	3.03892159575778	2.66672836986274	1.94700782560915	3.00277325821246	-1.68343065955035	0.00812607353717138	0.0938671023417672
Merged-chr11-59538586-4	chr11	59538480	59538680	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2989.0	NM_001359638	216799.0	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120577561-2	chr8	120577461	120577661	+	571.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145896, intron 14 of 15)	intron (NM_001145896, intron 14 of 15)	11514.0	NM_178856	272551.0	Mm.275910	NM_178856	ENSMUSG00000031821	Gins2	2210013I18Rik|4833427B12Rik|AI323585|Pfs2	GINS complex subunit 2 (Psf2 homolog)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-54736518-4	chr9	54736418	54736618	+	874.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1969.0	NM_001025375	66317.0	Mm.28437	NM_023191	ENSMUSG00000061559	Wdr61	2700038L12Rik|2810418I05Rik|REC14	WD repeat domain 61	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45064865-2	chr7	45064765	45064965	+	673.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163684, intron 1 of 8)	B1_Mur3|SINE|Alu	2436.0	NM_025533	66394.0	Mm.272139	NM_025533	ENSMUSG00000003421	Nosip	2310061K06Rik|CGI-25	nitric oxide synthase interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-58553868-1	chr4	58553768	58553968	+	614.0	f1_balb.idr	promoter-TSS (NM_010336)	promoter-TSS (NM_010336)	-377.0	NM_010336	14745.0	Mm.4772	NM_010336	ENSMUSG00000038668	Lpar1	AI326300|Edg2|Gpcr26|Kdt2|lpA1|vzg-1	lysophosphatidic acid receptor 1	protein-coding	0.864733097696637	0.556692413681964	0.542421452514769	1.83403645895489	0.514838133014127	0.559861200265631	1.60202693067176	1.08385190738328	-0.214341396627287	0.896280873314975	0.998431161219273
Merged-chr4-21879010-3	chr4	21878911	21879111	+	741.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172687)	promoter-TSS (NM_172687)	-635.0	NM_172687	230027.0	Mm.5662	NM_172687	ENSMUSG00000028247	Coq3	4732433J24|C77934	coenzyme Q3 methyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-49926686-2	chr16	49926586	49926786	+	753.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29144.0	NR_153658	100503490.0	Mm.72499	NR_153658		Gm19723	-	predicted gene, 19723	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85474029-4	chr12	85473917	85474117	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010234, exon 1 of 4)	5' UTR (NM_010234, exon 1 of 4)	127.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-88214108-1	chr4	88214008	88214208	+	634.0	f0_balb.idr	intron (NM_001081184, intron 11 of 43)	RMER15|LTR|ERVL	92068.0	NR_030478	735282.0		NR_030478	ENSMUSG00000070077	Mir491	Mirn491|mir-491|mmu-mir-491	microRNA 491	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131678737-3	chr1	131678614	131678814	+	752.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9981.0	NM_001311096	226421.0	Mm.44508	NM_145509	ENSMUSG00000052688	Rab7b	5430435G22Rik	RAB7B, member RAS oncogene family	protein-coding	2.46855193139058	1.77740082262551	2.30903145588381	2.32403115206937	1.25805015793695	1.12483128514224	1.87825434601131	1.07615120416293	-2.60744846808202	0.0205506702773043	0.182461969896717
Merged-chr12-21264386-4	chr12	21264284	21264484	+	868.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004364, intron 23 of 26)	intron (NM_001004364, intron 23 of 26)	21900.0	NM_008403	16413.0	Mm.273333	NM_008403	ENSMUSG00000062352	Itgb1bp1	AI449260|AU019480|Icap1	integrin beta 1 binding protein 1	protein-coding	3.11497307939535	3.3336544337644	2.55126896992513	2.90218624029046	2.24490717874644	2.51287666411553	2.57102464830471	2.82464798580286	-0.881007358670873	0.206995965895492	0.695098179808171
Merged-chr16-89904856-2	chr16	89904756	89904956	+	671.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_009384, intron 3 of 27)	IMPB_01|Satellite|Satellite	55971.0	NM_009384	21844.0	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-94993014-2	chr11	94992918	94993118	+	719.333374	f0_balb.idr|f0_c57.idr	intron (NM_172261, intron 1 of 9)	intron (NM_172261, intron 1 of 9)	1806.0	NM_172261	217124.0	Mm.229087	NM_172261	ENSMUSG00000038976	Ppp1r9b	SPL|Spn	protein phosphatase 1, regulatory subunit 9B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-73279952-2	chr5	73279852	73280052	+	940.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_040689, intron 1 of 2)	intron (NR_040689, intron 1 of 2)	4232.0	NR_040689	72276.0	Mm.271215	NR_040687	ENSMUSG00000100175	1700025M24Rik	-	RIKEN cDNA 1700025M24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-143599353-2	chr7	143599253	143599453	+	553.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013742, intron 1 of 22)	intron (NM_013742, intron 1 of 22)	737.0	NM_001252593	27267.0	Mm.125659	NM_013742	ENSMUSG00000010755	Cars	CA3	cysteinyl-tRNA synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-78897088-2	chr11	78896988	78897188	+	953.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-23699.0	NM_010927	18126.0	Mm.2893	NM_010927	ENSMUSG00000020826	Nos2	MAC-NOS|NOS-II|Nos-2|Nos2a|i-NOS|iNOS	nitric oxide synthase 2, inducible	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-88772018-2	chr5	88771918	88772118	+	993.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_007832, intron 2 of 6)	intron (NM_007832, intron 2 of 6)	7005.0	NM_007832	13178.0	Mm.298892	NM_007832	ENSMUSG00000029366	Dck	-	deoxycytidine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140737954-2	chr5	140737854	140738054	+	815.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_173405, intron 2 of 7)	intron (NM_173405, intron 2 of 7)	13827.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-71964486-2	chr6	71964386	71964586	+	602.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009088, intron 22 of 33)	intron (NM_009088, intron 22 of 33)	55433.0	NM_009088	20019.0	Mm.135581	NM_009088	ENSMUSG00000049553	Polr1a	194kDa|2900087K15Rik|3010014K16Rik|RPA194|Rpo1-4|mRPA1	polymerase (RNA) I polypeptide A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-13895081-2	chr6	13894981	13895181	+	836.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045995, intron 2 of 2)	ORR1C2|LTR|ERVL-MaLR	23512.0	NR_045995	76311.0	Mm.367129	NR_045995	ENSMUSG00000097616	1110019D14Rik	-	RIKEN cDNA 1110019D14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-78303770-4	chr10	78303687	78303887	+	965.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053014, intron 2 of 9)	intron (NM_053014, intron 2 of 9)	36420.0	NR_106119	102465765.0		NR_106119	ENSMUSG00000098885	Mir7659	Gm27433|mmu-mir-7659	microRNA 7659	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-76490787-2	chr11	76490687	76490887	+	699.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198018, intron 1 of 21)	intron (NM_198018, intron 1 of 21)	3708.0	NM_001346670	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	-1.84371485578039	-1.81332821174849	-1.82251738371298	-1.83006564316449	-1.84158176955426	-1.81133687985023	-1.5312619047181	-1.82871450833159	1.60090129203521	0.64914985597185	1
Merged-chr17-35906562-2	chr17	35906462	35906662	+	803.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347378, intron 6 of 11)	L2a|LINE|L2	3506.0	NM_001142745	73242.0	Mm.273155	NM_028476	ENSMUSG00000024426	Atat1	0610011P08Rik|2610008K08Rik|2610110G12Rik|3110080J08Rik|Mec17|TAT	alpha tubulin acetyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128284146-3	chr10	128284013	128284213	+	685.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_019963, exon 19 of 24)	exon (NM_019963, exon 19 of 24)	13615.0	NM_019963	20847.0	Mm.293120	NM_019963	ENSMUSG00000040033	Stat2	1600010G07Rik|AW496480	signal transducer and activator of transcription 2	protein-coding	0.43320872403861	0.460366927317412	1.26031140947203	0.444689168310833	0.594223946241137	0.846874431576225	1.06966456863466	0.907829460509204	0.743903794616492	0.659860940339451	1
Merged-chr3-96058775-2	chr3	96058675	96058875	+	664.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013841)	promoter-TSS (NM_013841)	-320.0	NM_013841	22365.0	Mm.263185	NM_013841	ENSMUSG00000015747	Vps45	AI462172|AW554165|mVps45	vacuolar protein sorting 45	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47228541-2	chr17	47228441	47228641	+	660.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001097623, intron 3 of 19)	intron (NM_001097623, intron 3 of 19)	-1689.0	NM_172622	224829.0	Mm.260989	NM_172622		Trerf1	9430096I18Rik|AI429294|B830015H24|RAPA|Trep-132|Trep132	transcriptional regulating factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-117352908-4	chr2	117352804	117353004	+	956.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10027.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-60570869-4	chr3	60570732	60570932	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310514, intron 2 of 8)	intron (NM_001310514, intron 2 of 8)	69653.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-28930770-2	chr6	28930670	28930870	+	706.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-91849.0	NR_029567	387237.0		NR_029567	ENSMUSG00000065469	Mir129-1	Mirn129-1|Mirn129b|miR-129b|mir-129-1	microRNA 129-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-81305706-2	chr7	81305606	81305806	+	931.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008803, intron 8 of 21)	intron (NM_008803, intron 8 of 21)	39528.0	NM_009092	20068.0	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-52426851-4	chr2	52426739	52426939	+	993.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1965.0	NM_182994	75423.0	Mm.314378	NM_182994	ENSMUSG00000036093	Arl5a	2410015N24Rik|2810410P22Rik|AA408731|AW610751|Arl5|T25534	ADP-ribosylation factor-like 5A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-81532872-4	chr12	81532725	81532925	+	886.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001309848)	promoter-TSS (NM_001309848)	86.0	NM_001309847	105940408.0		NM_001309847	ENSMUSG00000021139	Gm20498	ARIP2a|Synj2bp-cox16	predicted gene 20498	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-156216779-4	chr4	156216677	156216877	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_172417, exon 2 of 4)	5' UTR (NM_172417, exon 2 of 4)	850.0	NM_172417	74183.0	Mm.431343	NM_172417	ENSMUSG00000078486	Perm1	2310042D19Rik	PPARGC1 and ESRR induced regulator, muscle 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-35145283-3	chr7	35145171	35145371	+	902.138916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25978.0	NM_007678	12606.0	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	-2.18375600819439	-2.15556918946382	-2.16409311609999	-2.17109492323169	-2.18177734563694	-2.01960173909294	-2.16216348594872	-2.16984160310277	0.759018020146679	0.829933115115583	1
Merged-chr1-4907214-4	chr1	4907147	4907347	+	966.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48919.0	NM_001159751	21399.0	Mm.207263	NM_011541	ENSMUSG00000033813	Tcea1	S-II	transcription elongation factor A (SII) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-92344419-1	chr5	92344319	92344519	+	1000.0	f1_balb.idr	intron (NM_001310664, intron 2 of 10)	MLTR11B|LTR|ERVK	4470.0	NM_021274	15945.0	Mm.877	NM_021274	ENSMUSG00000034855	Cxcl10	C7|CRG-2|INP10|IP-10|IP10|Ifi10|Scyb10|gIP-10|mob-1	chemokine (C-X-C motif) ligand 10	protein-coding	0.454976308606064	1.12448474965255	1.17640862711855	0.466126798613112	0.612948328489723	0.483347534235243	0.825864480967017	1.03667658161321	-0.516105029067598	0.759265787716511	1
Merged-chr2-120381585-4	chr2	120381496	120381696	+	811.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110497, intron 7 of 19)	intron (NM_001110497, intron 7 of 19)	-22300.0	NM_172672	76051.0	Mm.38851	NM_172672	ENSMUSG00000062646	Ganc	5830445O15Rik|9330160A12|mFLJ00088	glucosidase, alpha; neutral C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-98807017-2	chr7	98806917	98807117	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-28095.0	NM_001285794	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-35114156-3	chr8	35114040	35114240	+	673.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-148450.0	NM_175091	21951.0	Mm.88364	NM_175091	ENSMUSG00000031529	Tnks	4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129575441-4	chr4	129575400	129575600	+	875.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1859.0	NM_001162433	16818.0	Mm.293753	NM_010693	ENSMUSG00000000409	Lck	Hck-3|Lsk|Lskt|p56<lck>|p56Lck	lymphocyte protein tyrosine kinase	protein-coding	2.71727330922569	3.78138520674036	3.17737194487709	2.47123621205527	2.74173532626395	2.96752703669582	4.33822537951874	3.19499822015181	0.54946782283927	0.414369752299217	0.896442802092227
Merged-chr17-56120122-2	chr17	56120022	56120222	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_029796, exon 2 of 2)	exon (NM_029796, exon 2 of 2)	1824.0	NM_029796	76905.0	Mm.348025	NM_029796	ENSMUSG00000037095	Lrg1	1300008B03Rik|2310031E04Rik|Lrg|Lrhg	leucine-rich alpha-2-glycoprotein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-4257690-3	chr18	4257593	4257793	+	739.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	91861.0	NM_026092	67328.0	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31375475-2	chr14	31375375	31375575	+	846.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347585, intron 7 of 7)	intron (NM_001347585, intron 7 of 7)	38837.0	NM_009796	12339.0	Mm.201535	NM_009796	ENSMUSG00000021893	Capn7	AU022319|PalBH	calpain 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-92973698-3	chr1	92973628	92973828	+	910.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001104529, intron 1 of 1)	intron (NM_001104529, intron 1 of 1)	609.0	NM_001104529	64095.0	Mm.152780	NM_022320	ENSMUSG00000026271	Gpr35	KPG_007	G protein-coupled receptor 35	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-74124538-4	chr1	74124457	74124657	+	867.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027884)	promoter-TSS (NM_027884)	-108.0	NM_001289895	21961.0	Mm.309975	NM_027884	ENSMUSG00000055322	Tns1	1110018I21Rik|1200014E20Rik|AI648117|E030018G17Rik|E030037J05Rik|Tns	tensin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-52998820-2	chr2	52998703	52998903	+	557.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	140935.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167759497-2	chr2	167759397	167759597	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	68320.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-26771837-1	chr10	26771737	26771937	+	552.0	f1_balb.idr	promoter-TSS (NM_176837)	promoter-TSS (NM_176837)	-675.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	-0.0111619786695677	0.0308739598554841	0.0176117544716624	0.00705329717968695	-0.00839482780464873	0.0338011729433852	1.74701235192948	0.910783096113874	4.7870090226299	0.159031319590759	0.618391829904723
Merged-chr8-119789473-2	chr8	119789373	119789573	+	923.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11057.0	NM_028883	74347.0	Mm.358759	NM_028883	ENSMUSG00000034105	Tldc1	4632415K11Rik|Kiaa1609	TBC/LysM associated domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-82270370-3	chr11	82270274	82270474	+	930.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-90562.0	NM_011329	20290.0	Mm.1283	NM_011329	ENSMUSG00000020702	Ccl1	BF534335|I-309|P500|Scya1|Tca-3|Tca3	chemokine (C-C motif) ligand 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-3016101-3	chr9	3016066	3016266	+	852.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GSAT_MM|Satellite|Satellite	22577.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5657711-2	chr17	5657611	5657811	+	868.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 2 of 8)	intron (NM_146073, intron 2 of 8)	-140946.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-29463236-2	chr19	29463136	29463336	+	694.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021396, intron 5 of 5)	intron (NM_021396, intron 5 of 5)	52317.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-85060096-4	chr8	85060005	85060205	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026791)	promoter-TSS (NM_026791)	-14.0	NM_026791	68628.0	Mm.374815	NM_026791	ENSMUSG00000008167	Fbxw9	1110017H11Rik|Fbw9	F-box and WD-40 domain protein 9	protein-coding	5.23970705682923	5.35451451017067	5.72960673093427	4.62554954235604	5.98227103269432	5.03450202685295	5.16151118356581	5.28143117803063	0.1611710625119	0.630852157119636	0.981465575333797
Merged-chr8-70590098-2	chr8	70590007	70590207	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007924, intron 8 of 11)	B1_Mus2|SINE|Alu	-4374.0	NM_023627	71780.0	Mm.29357	NM_023627	ENSMUSG00000019139	Isyna1	1300017C10Rik|AU018670	myo-inositol 1-phosphate synthase A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-122969842-4	chr7	122969725	122969925	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011247)	promoter-TSS (NM_011247)	634.0	NR_045614	73951.0	Mm.389936	NR_045614		4930413G21Rik	-	RIKEN cDNA 4930413G21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128264074-1	chr10	128263974	128264174	+	587.333313	f1_c57bl6.idr	Intergenic	Intergenic	-3923.0	NM_133997	103161.0	Mm.26513	NM_133997	ENSMUSG00000047631	Apof	AI255964	apolipoprotein F	protein-coding	-1.20406370813143	-1.56956373024278	-1.57884638916872	-1.58647144159385	-1.598104728449	-1.56755213932999	-1.57674499865798	-1.58510656085539	-1.70745470802464	0.626337835847419	1
Merged-chr7-80063714-2	chr7	80063614	80063814	+	621.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045695, intron 2 of 2)	intron (NR_045695, intron 2 of 2)	11543.0	NR_045695	100859962.0	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-3105532-4	chr11	3105447	3105647	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18474.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-56296103-2	chr8	56296003	56296203	+	758.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008278, intron 2 of 6)	intron (NM_008278, intron 2 of 6)	1551.0	NM_008278	15446.0	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-27429485-4	chr14	27429364	27429564	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028945, intron 1 of 23)	CpG	630.0	NM_001114879	218850.0	Mm.247767	NM_028945	ENSMUSG00000040651	Fam208a	4732418E12|4933409E02Rik|D14Abb1e|MommeD6	family with sequence similarity 208, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-5867364-3	chr13	5867264	5867464	+	900.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011803, exon 4 of 4)	3' UTR (NM_011803, exon 4 of 4)	5875.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-43384924-3	chr5	43384803	43385003	+	872.166626	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-130666.0	NM_001135172	109323.0	Mm.275553	NM_175425	ENSMUSG00000061535	C1qtnf7	5530401N20Rik|8430425G24Rik|Ctrp7	C1q and tumor necrosis factor related protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-97231465-4	chr3	97231368	97231568	+	844.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4104.0	NM_029933	77578.0	Mm.226175	NM_029933	ENSMUSG00000038256	Bcl9	2610202E01Rik|8030475K17Rik|A330041G23Rik|Gm130	B cell CLL/lymphoma 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-158161065-2	chr2	158160965	158161165	+	951.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14673.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-51307786-3	chr13	51307688	51307888	+	957.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-100830.0	NM_010101	13610.0	Mm.136736	NM_010101	ENSMUSG00000067586	S1pr3	AI132464|Edg3|Lpb3|S1p3	sphingosine-1-phosphate receptor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-103514260-4	chr15	103514153	103514353	+	960.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285890)	promoter-TSS (NM_001285890)	-724.0	NM_001285890	18574.0	Mm.390792	NM_008800	ENSMUSG00000022489	Pde1b	Pde1b1	phosphodiesterase 1B, Ca2+-calmodulin dependent	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-49080857-2	chr11	49080757	49080957	+	903.7000119999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271677, intron 1 of 2)	intron (NM_001271677, intron 1 of 2)	4270.0	NM_001271677	15953.0	Mm.24769	NM_008330	ENSMUSG00000078920	Ifi47	47kDa|IRG-47|Ifggc1|Igrd|Iigp4|Iipg4|Irgd	interferon gamma inducible protein 47	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-54987617-2	chr12	54987517	54987717	+	568.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-1281.0	NM_013815	217578.0	Mm.479583	NM_013815	ENSMUSG00000035021	Baz1a	Acf1|B930060C03|BC065123|Gtl5|Wcrf180|cbp146	bromodomain adjacent to zinc finger domain 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5921010-2	chr17	5920910	5921110	+	764.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025664, intron 12 of 17)	intron (NM_025664, intron 12 of 17)	-20270.0	NM_001113353	20975.0	Mm.236068	NM_011523	ENSMUSG00000023805	Synj2	AI481647|SJ2|mKIAA0348	synaptojanin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-4333837-3	chr18	4333726	4333926	+	726.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007746, exon 7 of 8)	exon (NM_007746, exon 7 of 8)	19127.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-65511882-1	chr3	65511782	65511982	+	672.0	f1_c57bl6.idr	Intergenic	Intergenic	-16565.0	NM_178892	99929.0	Mm.246398	NM_178892	ENSMUSG00000034640	Tiparp	ARTD14|AW558171|PARP7	TCDD-inducible poly(ADP-ribose) polymerase	protein-coding	-0.863648127459442	-0.850756235772957	-0.856660291265419	-0.684301641911962	-0.86299825770637	-0.847843770770585	-0.85591098348886	-0.098918936197413	2.28694157077571	0.442000399473113	1
Merged-chr13-113657881-2	chr13	113657781	113657981	+	847.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	5795.0	NM_019960	56534.0	Mm.41410	NM_019960	ENSMUSG00000051456	Hspb3	2310035K17Rik|AI844863|Hsbp3|spb3	heat shock protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-162922315-2	chr2	162922215	162922415	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9193.0	NM_026499	67996.0	Mm.24042	NM_026499	ENSMUSG00000016921	Srsf6	1210001E11Rik|AI314910|AW146126|Sfrs6	serine/arginine-rich splicing factor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-14586268-4	chr19	14586169	14586369	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302951, intron 4 of 19)	intron (NM_001302951, intron 4 of 19)	10944.0	NM_001302951	21888.0	Mm.103638	NM_011600	ENSMUSG00000024642	Tle4	5730411M05Rik|AA792082|Bce-1|Bce1|ESTM13|ESTM14|Grg4|X83332|X83333|grg-4	transducin-like enhancer of split 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-79918665-2	chr10	79918565	79918765	+	663.5	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_053244, exon 1 of 5)	5' UTR (NM_053244, exon 1 of 5)	1694.0	NM_053244	114229.0	Mm.191035	NM_053244	ENSMUSG00000035773	Kiss1r	Gpr54|KiSS-1|kiSS-1R	KISS1 receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70659768-4	chr8	70659583	70659783	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023217)	promoter-TSS (NM_023217)	55.0	NM_023217	66522.0	Mm.154906	NM_023217	ENSMUSG00000056204	Pgpep1	2810003H13Rik|Gm19458|PAP-I|PGP|PGP-I|PGPI|Pcp	pyroglutamyl-peptidase I	protein-coding	3.00789975235553	1.14457506001936	2.8062089991142	1.06929344080708	3.08535160283157	1.15357762046546	2.83019708176153	1.07533274080823	0.085436861603164	0.972682228565623	0.998431161219273
Merged-chr8-72723279-4	chr8	72723163	72723363	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009188)	promoter-TSS (NM_009188)	-7.0	NM_001113248	20467.0	Mm.2137	NM_009188	ENSMUSG00000031622	Sin3b	2810430C10Rik	transcriptional regulator, SIN3B (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-116141415-3	chr12	116141316	116141516	+	606.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009511, intron 10 of 12)	MTC|LTR|ERVL-MaLR	63690.0	NM_009511	22355.0	Mm.395245	NM_009511	ENSMUSG00000011171	Vipr2	VPAC2|VPAC2R|Vip2	vasoactive intestinal peptide receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-66227548-2	chr14	66227448	66227648	+	599.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	-13724.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-92410821-2	chr16	92410721	92410921	+	862.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081549, intron 1 of 3)	B1F|SINE|Alu	-10743.0	NM_019466	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-93774002-3	chr13	93773888	93774088	+	974.2000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009712, intron 1 of 7)	intron (NM_009712, intron 1 of 7)	2309.0	NM_009712	11881.0	Mm.300178	NM_009712	ENSMUSG00000042082	Arsb	1110007C02Rik|AI480648|As-1|As-1r|As-1s|As-1t|As1|As1-r|As1-s|As1-t|Asr-1|Ast-1	arylsulfatase B	protein-coding	1.14065417351931	1.64013361479591	0.746500724688955	1.32343832231094	1.25874041330207	0.760560754096356	1.25609212725009	0.923881409883244	-0.79710453399955	0.569349663156538	0.962718661854691
Merged-chr19-34633649-4	chr19	34633550	34633750	+	938.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053217, intron 1 of 2)	intron (NM_053217, intron 1 of 2)	-3839.0	NM_001362130	112419.0	Mm.440727	NM_053217	ENSMUSG00000067297	Ifit1bl2	2010002M12Rik|AW412491|Ifit1b	interferon induced protein with tetratricopeptide repeats 1B like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-157537875-2	chr1	157537775	157537975	+	626.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159986, intron 9 of 25)	intron (NM_001159986, intron 9 of 25)	11705.0	NM_001159986	89867.0	Mm.87114	NM_033354	ENSMUSG00000026589	Sec16b	Lztr2|Rgpr|Rgpr-p117	SEC16 homolog B (S. cerevisiae)	protein-coding	-0.999999674489517	-0.636700585974243	-0.994203952634121	-0.996552678530406	-0.999487640908427	-0.979893116615069	-0.991541300803265	-0.566406214772358	0.4201000681076	0.89548518237229	1
Merged-chr11-46063276-4	chr11	46063152	46063352	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291890, intron 2 of 22)	intron (NM_001291890, intron 2 of 22)	7268.0	NM_001291891	11492.0	Mm.89940	NM_009616	ENSMUSG00000011256	Adam19	AL024287|MADDAM|MTLNB|Mltnb	a disintegrin and metallopeptidase domain 19 (meltrin beta)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-79778683-2	chr10	79778583	79778783	+	613.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_031380, exon 2 of 5)	exon (NM_031380, exon 2 of 5)	1409.0	NM_031380	83554.0	Mm.251710	NM_031380	ENSMUSG00000020325	Fstl3	E030038F23Rik|Flrg	follistatin-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-108688829-2	chr8	108688729	108688929	+	884.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20C1_MM|LTR|ERVK	-25815.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-63048780-2	chr11	63048680	63048880	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2B|LTR|ERVL	-12879.0	NM_027660	71062.0	Mm.23534	NM_027660	ENSMUSG00000042189	Tekt3	4933407G07Rik	tektin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-90009246-2	chr9	90009146	90009346	+	995.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357743, intron 20 of 26)	intron (NM_001357743, intron 20 of 26)	-45021.0	NM_007801	13036.0	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-38201115-4	chr7	38201028	38201228	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17341.0	NM_028166	72244.0	Mm.187554	NM_028166		1600014C10Rik	AI428873	RIKEN cDNA 1600014C10 gene	protein-coding	3.31802884425313	3.76862823622638	3.02040161666349	2.58291396901316	2.16979166655275	3.51505102937533	2.68278896452133	3.22128370832951	-0.423593855642981	0.532402345301126	0.951976652596559
Merged-chr16-87351934-1	chr16	87351834	87352034	+	549.0	f1_balb.idr	Intergenic	ID_B1|SINE|B4	-2251.0	NM_001159331	67768.0	Mm.296532	NM_026366	ENSMUSG00000044442	N6amt1	5830445C04Rik|Hemk2|Pred28	N-6 adenine-specific DNA methyltransferase 1 (putative)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-153960338-2	chr3	153960238	153960438	+	622.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-13098.0	NM_001081263	242259.0	Mm.239962	NM_001081263	ENSMUSG00000028360	Slc44a5	AA117069|Gm422	solute carrier family 44, member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-22006309-4	chr13	22006231	22006431	+	770.854126	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019429, intron 7 of 11)	intron (NM_019429, intron 7 of 11)	3410.0	NM_019429	54373.0	Mm.32043	NM_019429	ENSMUSG00000006179	Prss16	AI448615|TSSP	protease, serine 16 (thymus)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-99095607-3	chr6	99095470	99095670	+	746.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053202, intron 4 of 18)	intron (NM_053202, intron 4 of 18)	-67272.0	NM_001197322	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-55810417-3	chr16	55810316	55810516	+	783.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001159394)	TTS (NM_001159394)	11722.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-105590127-4	chr11	105590080	105590280	+	953.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_181071, exon 1 of 26)	5' UTR (NM_181071, exon 1 of 26)	194.0	NM_181071	77097.0	Mm.22501	NM_175492	ENSMUSG00000053580	Tanc2	3526402J09Rik|5730590C14Rik	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-104103665-4	chr8	104103558	104103758	+	973.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009868, intron 1 of 11)	intron (NM_009868, intron 1 of 11)	2033.0	NM_009868	12562.0	Mm.21767	NM_009868	ENSMUSG00000031871	Cdh5	7B4|AA408225|Cd144|VE-Cad|VECD|VEcad|Vec	cadherin 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-7210513-2	chr10	7210416	7210616	+	696.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172546, intron 1 of 12)	intron (NM_172546, intron 1 of 12)	1721.0	NM_172546	215748.0	Mm.37984	NM_172546	ENSMUSG00000015202	Cnksr3	6820402C05|BC024086|Magi1	Cnksr family member 3	protein-coding	-0.700064241511417	-0.186671140929496	-0.692852367725508	-0.695563882069579	-0.699394869705802	-0.177296101845517	-0.692077155152847	-0.695090216270211	0.0394491945098347	0.989215944639676	1
Merged-chr9-57565810-4	chr9	57565708	57565908	+	955.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022813, intron 1 of 8)	intron (NM_022813, intron 1 of 8)	4864.0	NM_022813	24044.0	Mm.286069	NM_022813	ENSMUSG00000040188	Scamp2	AI875466|Sc2	secretory carrier membrane protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-78477392-3	chr9	78477322	78477522	+	894.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4302.0	NM_010106	13627.0	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166481120-4	chr2	166481026	166481226	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33675.0	NR_015558	319684.0	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-11813340-4	chr19	11813254	11813454	+	998.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011502, intron 1 of 10)	intron (NM_011502, intron 1 of 10)	6049.0	NM_001286543	20908.0	Mm.272264	NM_011502	ENSMUSG00000041488	Stx3	Syn-3	syntaxin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-13069000-2	chr6	13068900	13069100	+	595.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027992)	promoter-TSS (NM_027992)	-759.0	NM_027992	71900.0	Mm.27742	NM_027992	ENSMUSG00000029571	Tmem106b	2310036D22Rik|5830455K21Rik|6430519M21Rik|AI428776|AI661344	transmembrane protein 106B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-143002865-2	chr7	143002765	143002965	+	591.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2181.0	NM_001128080	27027.0	Mm.28172	NM_020286	ENSMUSG00000000244	Tspan32	AW208513|Art-1|BB235973|D7Wsu37e|Phemx|Tssc6	tetraspanin 32	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-36596442-3	chr5	36596346	36596546	+	746.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-10220.0	NM_001113362	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	-0.728923324633371	-0.509974464286214	-0.721081828502768	-0.724024155853021	0.111195854522116	-0.716422120994603	-0.720241918858203	-0.723509660962632	2.46442254238112	0.389104764349756	1
Merged-chr1-15805586-4	chr1	15805497	15805697	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_152944)	promoter-TSS (NR_152944)	-49.0	NM_009352	21749.0	Mm.4306	NM_009352	ENSMUSG00000025925	Terf1	Pin2|Trbf1|Trf1	telomeric repeat binding factor 1	protein-coding	7.34534346278359	7.82791863107542	7.35319523568482	7.08422036006237	7.24464907781378	7.64996467077098	7.7391914771664	7.24318469856906	0.061386750439656	0.739117810069315	0.998431161219273
Merged-chr10-86779742-4	chr10	86779677	86779877	+	991.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175331, intron 1 of 13)	intron (NM_175331, intron 1 of 13)	772.0	NM_175331	103466.0	Mm.200446	NM_175331	ENSMUSG00000054027	Nt5dc3	AU040402|AW540062|C630002B14Rik|TU12B1-TY	5'-nucleotidase domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-8500058-4	chr12	8499954	8500154	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007483)	promoter-TSS (NM_007483)	-45.0	NM_007483	11852.0	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	5.8687412953708	6.56336443191834	7.15760857389244	6.18876509888446	5.94252973696613	5.5212059858832	7.15922752259808	5.87563965800637	-0.270358132918355	0.585348872373999	0.967268722441911
Merged-chr10-89383711-2	chr10	89383611	89383811	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60256.0	NM_001284344	237436.0	Mm.11982	NM_001033331	ENSMUSG00000074802	Gas2l3	8430435B07Rik|Gm240	growth arrest-specific 2 like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-67341690-4	chr17	67341598	67341798	+	998.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	12761.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-68392112-4	chr15	68392004	68392204	+	872.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50815.0	NR_029718	387228.0		NR_029718	ENSMUSG00000065437	Mir30d	Mirn30d|mir-30d|mmu-mir-30d	microRNA 30d	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91112694-3	chr2	91112593	91112793	+	967.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011355, intron 2 of 4)	intron (NM_011355, intron 2 of 4)	-5451.0	NM_008653	17868.0	Mm.10728	NM_008653	ENSMUSG00000002100	Mybpc3	-	myosin binding protein C, cardiac	protein-coding	2.57324893854342	3.22694124673352	3.21025313188581	3.76327914327838	2.47315691155107	2.62998636164193	3.04491793096922	3.37019717251083	-0.568969734103948	0.387925658217189	0.877734230693331
Merged-chr2-160657981-2	chr2	160657881	160658081	+	700.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_009408, intron 2 of 20)	B3|SINE|B2	12084.0	NM_009408	21969.0	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-93070841-4	chr10	93070749	93070949	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347060, intron 1 of 67)	intron (NM_001347060, intron 1 of 67)	10747.0	NM_001347060	380654.0	Mm.34980	NM_001347060	ENSMUSG00000020014	Cfap54	4930485B16Rik|Gm872	cilia and flagella associated protein 54	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-58660719-1	chr15	58660619	58660819	+	682.0	f0_balb.idr	Intergenic	Intergenic	162708.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-5058094-2	chr11	5057994	5058194	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145216)	promoter-TSS (NM_145216)	-34.0	NM_145216	75668.0	Mm.374836	NM_145216	ENSMUSG00000034209	Rasl10a	2210403B10Rik|AI852688	RAS-like, family 10, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-102059916-2	chr5	102059816	102060016	+	660.43335	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 1 of 66)	ID_B1|SINE|B4	10005.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-149971759-2	chr1	149971659	149971859	+	854.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-10469.0	NM_008869	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-139232627-4	chr4	139232522	139232722	+	980.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	38511.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	1.33154275820581	2.00265744304694	2.15500038982837	2.27018450221965	0.922023168417285	2.62386268462145	0.982633834626527	0.958409183720743	-0.845804709552858	0.503081864802626	0.939787919021146
Merged-chr3-142588243-3	chr3	142588200	142588400	+	717.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6547.0	NM_010259	14468.0	Mm.457978	NM_010259	ENSMUSG00000040264	Gbp2b	Gbp-1|Gbp1|Mag-1|Mpa-1|Mpa1	guanylate binding protein 2b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-144266084-4	chr2	144265968	144266168	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_030762)	TTS (NR_030762)	134.0	NR_030762	100313519.0	Mm.453538	NR_030762	ENSMUSG00000077714	Snord17	MBI-43	small nucleolar RNA, C/D box 17	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-123318597-4	chr8	123318493	123318693	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016925)	promoter-TSS (NM_016925)	-17.0	NM_016925	14087.0	Mm.6536	NM_016925	ENSMUSG00000032815	Fanca	AW208693|FACA	Fanconi anemia, complementation group A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-31223029-2	chr5	31222929	31223129	+	642.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTRIS5|LTR|ERV1	-2484.0	NM_008014	14208.0	Mm.14501	NM_008014	ENSMUSG00000029147	Ppm1g	AI385652|Fin13	protein phosphatase 1G (formerly 2C), magnesium-dependent, gamma isoform	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-37086333-3	chr9	37086237	37086437	+	870.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029838, intron 1 of 12)	Lx8b|LINE|L1	60985.0	NM_148950	208076.0	Mm.260335	NM_148950	ENSMUSG00000035934	Pknox2	D230005H23Rik|Prep2	Pbx/knotted 1 homeobox 2	protein-coding	-0.92121735132789	-0.908095809867643	-0.603874820210795	-0.917933661266693	-0.9207302941734	-0.90555953872215	-0.597079440728523	-0.758644282314771	0.553917338339328	0.850648737218871	1
Merged-chr2-135529781-2	chr2	135529681	135529881	+	555.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53439.0	NR_015544	320684.0	Mm.421433	NR_015544	ENSMUSG00000085631	9630028H03Rik	-	RIKEN cDNA 9630028H03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-124986702-2	chr4	124986602	124986802	+	647.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_138683, intron 1 of 5)	CpG	272.0	NM_138683	192199.0	Mm.42202	NM_138683	ENSMUSG00000028871	Rspo1	R-spondin|Rspondin	R-spondin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-27604882-4	chr7	27604784	27604984	+	988.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007434)	promoter-TSS (NM_007434)	-913.0	NM_007434	11652.0	Mm.177194	NM_007434	ENSMUSG00000004056	Akt2	2410016A19Rik|AW554154|PKB|PKBbeta	thymoma viral proto-oncogene 2	protein-coding	4.75311764633704	5.29694662171556	5.644789174231	4.8351425519552	4.56467866145891	4.98056385875267	5.14295075870302	4.34496729164671	-0.462520287017185	0.192605114507956	0.67098611029804
Merged-chr16-36718670-4	chr16	36718622	36718822	+	973.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285791, intron 5 of 6)	intron (NM_001285791, intron 5 of 6)	24744.0	NM_001285791	106347.0	Mm.17807	NM_134109	ENSMUSG00000022900	Ildr1	AU041483|AU044638	immunoglobulin-like domain containing receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-83596597-3	chr8	83596499	83596699	+	731.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER12|LTR|ERVK	-2108.0	NM_134118	106529.0	Mm.352239	NM_027179	ENSMUSG00000031708	Tecr	2410016D23Rik|A230102P12Rik|AI173355|D17Ertd178e|Gpsn2|SC2	trans-2,3-enoyl-CoA reductase	protein-coding	1.85166630060613	0.863425843766171	1.28680357712692	0.82630963542927	0.802223662082354	2.31533136791743	1.29790424170431	1.89136199110769	1.27056659006133	0.348738976343778	0.848945672563096
Merged-chr9-40872203-5	chr9	40872147	40872347	+	827.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1880.0	NM_178245	244813.0	Mm.261652	NM_178245	ENSMUSG00000054360	Bsx	Bsx1a|Bsx1b	brain specific homeobox	protein-coding	2.14471909831168	3.11468834343891	1.73993610914372	2.01571590487895	2.66842824020249	2.31272309084549	1.7535461284309	1.23935393225162	-0.568745894554868	0.561617552936541	0.960362415684079
Merged-chr9-57831497-4	chr9	57831391	57831591	+	913.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019689, intron 1 of 7)	intron (NM_019689, intron 1 of 7)	2743.0	NM_019689	56380.0	Mm.425588	NM_019689	ENSMUSG00000004661	Arid3b	Bdp|Dri2	AT rich interactive domain 3B (BRIGHT-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5964936-2	chr19	5964836	5965036	+	601.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008893)	promoter-TSS (NM_008893)	-730.0	NM_008893	18969.0	Mm.209931	NM_008893	ENSMUSG00000024833	Pola2	AI573378	polymerase (DNA directed), alpha 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-38336709-3	chr2	38336599	38336799	+	927.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2582.0	NM_001290646	16870.0	Mm.142856	NM_010710	ENSMUSG00000000247	Lhx2	LH2A|Lh-2|Lim2|ap|apterous	LIM homeobox protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-77459823-3	chr1	77459731	77459931	+	805.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007936, intron 3 of 17)	intron (NM_007936, intron 3 of 17)	36937.0	NR_105770	102465180.0		NR_105770	ENSMUSG00000099141	Mir6352	Gm27481|mmu-mir-6352	microRNA 6352	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-148472722-2	chr5	148472622	148472822	+	548.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1C|Other|Other	-72818.0	NM_007513	11987.0	Mm.275489	NM_007513	ENSMUSG00000041313	Slc7a1	4831426K01Rik|AI447493|Atrc-1|Atrc1|Cat1|Rec-1|Rev-1|mCAT-1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-38440588-2	chr18	38440488	38440688	+	554.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355749, intron 1 of 7)	intron (NM_001355749, intron 1 of 7)	21681.0	NM_001355749	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-63079518-1	chr14	63079418	63079618	+	843.0	f0_balb.idr	Intergenic	Intergenic	24445.0	NR_046019	72609.0	Mm.387101	NR_046019		2700070H01Rik	-	RIKEN cDNA 2700070H01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-75678767-4	chr15	75678681	75678881	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355589)	promoter-TSS (NM_001355589)	19.0	NM_001355589	72960.0	Mm.182401	NM_028404	ENSMUSG00000000934	Top1mt	2900052H09Rik	DNA topoisomerase 1, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52042677-3	chr13	52042580	52042780	+	850.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54061.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-82799481-2	chr1	82799381	82799581	+	556.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31025.0	NM_025453	66261.0	Mm.46325	NM_025453	ENSMUSG00000026149	Tm4sf20	1810018L02Rik	transmembrane 4 L six family member 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-139230951-4	chr4	139230863	139231063	+	873.49585	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	36852.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	4.14032542511669	4.31275984010112	3.50740476323772	4.60227557718525	2.73031974973903	3.35535419610763	3.84888540557654	2.21477769945684	-1.48587719523451	0.00929082591444527	0.103341776256039
Merged-chr16-95821162-4	chr16	95821065	95821265	+	985.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	77548.0	NR_040485	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-121243027-4	chr3	121242861	121243061	+	724.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178936, intron 1 of 7)	MTE-int|LTR|ERVL-MaLR	20198.0	NM_001355678	99887.0	Mm.26088	NM_178936	ENSMUSG00000028132	Tmem56	4930577M16Rik|AU018104|AW109744|C730036B01Rik	transmembrane protein 56	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-56723967-4	chr19	56723877	56724077	+	930.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007419, exon 1 of 1)	3' UTR (NM_007419, exon 1 of 1)	1605.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99723365-4	chr15	99723270	99723470	+	962.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010271, exon 8 of 8)	3' UTR (NM_010271, exon 8 of 8)	1104.0	NR_155353	102638434.0	Mm.364438	NR_155353		Gm16537	-	predicted gene 16537	ncRNA	3.29558198480793	4.01569048836531	4.18707198282129	3.63841908786621	3.8037178176683	4.34961642242937	3.91553256328865	3.31199190254742	0.0980701286302544	0.844230832941035	0.998431161219273
Merged-chr16-91064826-3	chr16	91064723	91064923	+	672.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028905, intron 1 of 2)	intron (NM_028905, intron 1 of 2)	4322.0	NM_001163695	74387.0	Mm.236220	NM_028905	ENSMUSG00000039851	4932438H23Rik	4931406G06Rik|AI550392	RIKEN cDNA 4932438H23 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-36161722-2	chr17	36161622	36161822	+	1000.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033517, exon 4 of 4)	non-coding (NR_033517, exon 4 of 4)	6815.0	NM_001081032	667977.0	Mm.441651	NM_001081032	ENSMUSG00000073402	Gm8909	EG667977|H2-Tw5l|H2-gs17	predicted gene 8909	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-32561902-4	chr4	32561799	32561999	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_026843, exon 4 of 5)	non-coding (NR_026843, exon 4 of 5)	9763.0	NR_026843	414068.0	Mm.389550	NR_026843	ENSMUSG00000086150	Bach2os	-	BTB and CNC homology 2, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4098194-2	chr19	4098094	4098294	+	821.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_026373, intron 3 of 3)	intron (NM_026373, intron 3 of 3)	843.0	NM_026373	52004.0	Mm.29609	NM_026373	ENSMUSG00000024856	Cdk2ap2	5830466O21Rik|D19Ertd144e|Doc-1r	CDK2-associated protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-54927651-3	chr12	54927560	54927760	+	640.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013815, exon 12 of 27)	exon (NM_013815, exon 12 of 27)	58676.0	NM_013815	217578.0	Mm.479583	NM_013815	ENSMUSG00000035021	Baz1a	Acf1|B930060C03|BC065123|Gtl5|Wcrf180|cbp146	bromodomain adjacent to zinc finger domain 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-31106445-2	chr6	31106345	31106545	+	750.6999509999999	f1_balb.idr|f1_c57bl6.idr	intron (NR_110471, intron 3 of 3)	intron (NR_110471, intron 3 of 3)	-43352.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171183685-3	chr1	171183609	171183809	+	907.2777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025557, intron 1 of 2)	intron (NM_025557, intron 1 of 2)	12559.0	NM_025557	66425.0	Mm.482117	NM_025557	ENSMUSG00000038370	Pcp4l1	1500036F01Rik	Purkinje cell protein 4-like 1	protein-coding	2.48402576138494	2.57168242798222	2.36398724529038	2.61779483978334	1.93275141494423	1.47476178448619	3.04403924927445	2.63125453854027	-0.182287121163427	0.832728308888967	0.998431161219273
Merged-chr10-7212251-4	chr10	7212159	7212359	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172546)	promoter-TSS (NM_172546)	-22.0	NM_172546	215748.0	Mm.37984	NM_172546	ENSMUSG00000015202	Cnksr3	6820402C05|BC024086|Magi1	Cnksr family member 3	protein-coding	0.430419927040283	0.49687068098906	2.18944157351277	1.1114145237868	0.434862774328506	0.501423667420846	2.06879788577305	0.462430240763989	-0.473535039627574	0.884953974771102	0.998431161219273
Merged-chr11-107529563-1	chr11	107529463	107529663	+	844.0	f1_balb.idr	Intergenic	Intergenic	-18397.0	NM_198298	78455.0	Mm.272047	NM_198298	ENSMUSG00000020721	Helz	3110078M01Rik|9430093I07Rik|9630002H22Rik|AI851979|DRHC	helicase with zinc finger domain	protein-coding	-1.52696403314699	-1.49523967873556	-1.5048333853602	-1.51271394162622	-1.52473704212565	-1.49316068248889	-1.50266158046844	-1.06847079017215	2.01069003169785	0.564432837776867	1
Merged-chr7-4796167-4	chr7	4796046	4796246	+	851.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	3181.0	NM_009081	19943.0	Mm.379002	NM_009081	ENSMUSG00000030432	Rpl28	D7Wsu21e	ribosomal protein L28	protein-coding	-0.953721354153451	-1.41025554057125	-1.42001056191158	-1.42802362688808	-1.44024889148474	-1.40814158675276	-1.41780223890411	-1.42658929208844	-2.11310844444413	0.543369238581748	1
Merged-chr13-24938862-3	chr13	24938750	24938950	+	868.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_102323, exon 2 of 2)	non-coding (NR_102323, exon 2 of 2)	-1189.0	NM_172532	214579.0	Mm.393311	NM_172532	ENSMUSG00000035936	Aldh5a1	6330403E24Rik|Ahd-1|Ahd1|D630032B01Rik|SSADH|Ssdh1	aldhehyde dehydrogenase family 5, subfamily A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-113928793-4	chr9	113928693	113928893	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-2141.0	NM_001083319	22221.0	Mm.28052	NM_013699	ENSMUSG00000009741	Ubp1	Cp2b|LBP-1a|LBP-1b|NF2d9	upstream binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127308608-2	chr10	127308508	127308708	+	857.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001171582, exon 6 of 22)	exon (NM_001171582, exon 6 of 22)	3178.0	NM_001003913	216443.0	Mm.28173	NM_001003913	ENSMUSG00000040354	Mars	Metrs|Mtrns	methionine-tRNA synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-73619713-2	chr7	73619613	73619813	+	733.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-61318.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94687880-3	chr10	94687785	94687985	+	933.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029852)	promoter-TSS (NM_029852)	728.0	NR_015524	67723.0	Mm.116284	NR_015524		Cep83os	4932415G12Rik|Ccdc41os1	centrosomal protein 83, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-117008437-2	chr2	117008337	117008537	+	556.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Kanga2_a|DNA|TcMar-Tc2	108285.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-106233627-2	chr1	106233527	106233727	+	651.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133821, intron 1 of 16)	intron (NM_133821, intron 1 of 16)	61758.0	NM_133821	98432.0	Mm.24115	NM_133821	ENSMUSG00000044340	Phlpp1	AI836256|Phlpp|Plekhe1|SCOP|mKIAA0606	PH domain and leucine rich repeat protein phosphatase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-108536614-2	chr3	108536514	108536714	+	792.200012	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029314)	promoter-TSS (NM_029314)	-73.0	NM_001033304	229722.0	Mm.316890	NM_001033304	ENSMUSG00000040412	5330417C22Rik	BB183350	RIKEN cDNA 5330417C22 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-39724915-4	chr6	39724852	39725052	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139294, intron 1 of 21)	CpG	511.0	NM_139294	109880.0	Mm.245513	NM_139294	ENSMUSG00000002413	Braf	9930012E13Rik|AA120551|AA387315|AA473386|B-raf|Braf-2|Braf2|C230098H17|C87398|D6Ertd631e	Braf transforming gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19148592-2	chr7	19148463	19148663	+	811.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026111, intron 1 of 6)	intron (NM_026111, intron 1 of 6)	633.0	NM_026111	67369.0	Mm.234876	NM_026111	ENSMUSG00000030407	Qpctl	1810019P04Rik|BB101812|gQC	glutaminyl-peptide cyclotransferase-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102368257-4	chr12	102368146	102368346	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177620, intron 5 of 9)	intron (NM_177620, intron 5 of 9)	71567.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-13565155-2	chr3	13565055	13565255	+	959.900024	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357034, intron 1 of 7)	L1_Mus2|LINE|L1	87710.0	NR_040598	75203.0	Mm.490940	NR_040598		4930539N22Rik	-	RIKEN cDNA 4930539N22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-3232655-2	chr16	3232533	3232733	+	745.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-359765.0	NM_146860	258859.0	Mm.377723	NM_146860	ENSMUSG00000051003	Olfr161	MOR131-1|OR912-47M6	olfactory receptor 161	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-24398945-2	chr7	24398845	24399045	+	806.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028047)	promoter-TSS (NM_028047)	-683.0	NM_028047	71997.0	Mm.150977	NM_028047	ENSMUSG00000002210	Smg9	1500002O20Rik|AI429693|N28092	smg-9 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-93189622-2	chr2	93189522	93189722	+	570.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_151503)	TTS (NR_151503)	2074.0	NM_001025246	277414.0	Mm.41033	NM_001025246	ENSMUSG00000068735	Trp53i11	Tp53i11	transformation related protein 53 inducible protein 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26481150-3	chr17	26481030	26481230	+	793.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27342.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	0.084137352238747	0.106590842091089	0.0992993095540428	0.0936316523839143	0.0855566861916119	0.901245935392671	0.466563128148668	0.883731556650877	4.27476883885034	0.0384568782336197	1
Merged-chr3-89865105-4	chr3	89865024	89865224	+	909.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33754.0	NM_172530	214547.0	Mm.225	NM_172530	ENSMUSG00000046280	She	9430022A14	src homology 2 domain-containing transforming protein E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-95859700-2	chr11	95859576	95859776	+	963.75	f0_balb.idr|f0_c57.idr	intron (NR_045187, intron 1 of 1)	CpG	859.0	NR_045187	73906.0	Mm.399894	NR_045187	ENSMUSG00000086015	4833417C18Rik	-	RIKEN cDNA 4833417C18 gene	ncRNA	1.52242840827698	2.12354938848644	1.79128726433598	2.19594648611265	2.26108326326542	1.2456934149953	1.94436136567327	2.00453808846405	-0.0305976822489989	0.976076775090143	0.998431161219273
Merged-chr15-75715085-3	chr15	75714971	75715171	+	876.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008164)	TTS (NM_008164)	10783.0	NM_008164	14787.0	Mm.57052	NM_008164	ENSMUSG00000022580	Rhpn1	BB023497|Grbp|Rhophilin|mKIAA1929	rhophilin, Rho GTPase binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-57592858-4	chr8	57592743	57592943	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167981, intron 1 of 11)	B3A|SINE|B2	-58910.0	NR_040698	100502619.0	Mm.393851	NR_040698		AW046200	-	expressed sequence AW046200	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69803915-4	chr11	69803775	69803975	+	928.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_027913, exon 1 of 1)	non-coding (NR_027913, exon 1 of 1)	206.0	NR_027913	74341.0	Mm.280165	NR_027913		G630025P09Rik	4632403M07Rik	RIKEN cDNA G630025P09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101538285-4	chr7	101538176	101538376	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17526.0	NM_007490	11871.0	Mm.439746	NM_007490	ENSMUSG00000092517	Art2a-ps	ARTC2|Art2a|Ly92a|Rt-6|Rt6|Rt6-1	ADP-ribosyltransferase 2a, pseudogene	protein-coding	4.91433331361157	5.7374917730567	6.06055235315149	5.36267074658238	5.34368595099978	5.47616730578999	5.6648280443736	4.99984643346541	-0.212820054760848	0.496902466215403	0.936897994490085
Merged-chr2-140109019-2	chr2	140108919	140109119	+	608.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-42214.0	NR_110351	75812.0	Mm.293449	NM_175225	ENSMUSG00000039033	Tasp1	4930485D02Rik|AW986064	taspase, threonine aspartase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115624238-4	chr5	115624141	115624341	+	964.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7575.0	NR_027810	66123.0	Mm.133063	NM_021417	ENSMUSG00000107121	1110006O24Rik	-	RIKEN cDNA 1110006O24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-79936707-4	chr7	79936609	79936809	+	975.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1445.0	NM_027420	70420.0	Mm.34266	NM_027420	ENSMUSG00000039043	Arpin	2610034B18Rik	actin-related protein 2/3 complex inhibitor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-123082412-3	chr7	123082296	123082496	+	784.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41489.0	NM_144925	233833.0	Mm.102305	NM_144925	ENSMUSG00000052707	Tnrc6a	2010321I05Rik|3110054G10Rik|AW557223|CAGH26|D130023A07Rik|GW182|Tnrc6	trinucleotide repeat containing 6a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-86672467-4	chr4	86672376	86672576	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2417.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	-0.939689859171677	-0.920375438977221	-0.931299611472457	0.0547743973239929	-0.938904031919501	-0.917255548672094	-0.930407580667812	-0.933885285392914	-3.35597997027105	0.279004136702824	1
Merged-chr3-103801962-4	chr3	103801848	103802048	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_133865, exon 4 of 4)	3' UTR (NM_133865, exon 4 of 4)	-1181.0	NR_040412	100503157.0	Mm.445554	NR_040412	ENSMUSG00000084997	Gm15471	-	predicted gene 15471	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-20644824-4	chr9	20644727	20644927	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286530)	promoter-TSS (NM_001286530)	24.0	NR_153859	66177.0	Mm.390165	NM_025401	ENSMUSG00000084786	Ubl5	1110030M22Rik|beacon	ubiquitin-like 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-27625407-1	chr3	27625307	27625507	+	835.5	f0_balb.idr	intron (NM_001356953, intron 3 of 26)	intron (NM_001356953, intron 3 of 26)	-40412.0	NR_037275	100526525.0		NR_037275	ENSMUSG00000092695	Mir3092	mir-3092|mmu-mir-3092	microRNA 3092	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167710766-2	chr2	167710666	167710866	+	657.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19589.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-104290045-4	chr12	104289949	104290149	+	819.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ETnERV2-int|LTR|ERVK	-24521.0	NM_001101472	238395.0	Mm.436975	NM_001101472	ENSMUSG00000079013	Serpina3j	AI506554|EG238395|Gm4931	serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 3J	protein-coding	3.51907026495201	3.86156544624243	3.04459263087955	2.3875061459483	3.81735460888806	3.05192726964966	3.8306198847419	3.5881892879869	0.461168743738181	0.436802199251761	0.908362185228875
Merged-chr6-116010768-4	chr6	116010666	116010866	+	899.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15761.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-36769356-3	chr9	36769295	36769495	+	811.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-1817.0	NM_008408	16430.0	Mm.2863	NM_008408	ENSMUSG00000032116	Stt3a	AA408947|BB081708|Itm1	STT3, subunit of the oligosaccharyltransferase complex, homolog A (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107336085-2	chr9	107335931	107336131	+	998.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133984, intron 4 of 10)	intron (NM_133984, intron 4 of 10)	2319.0	NM_133984	69536.0	Mm.259467	NM_133984	ENSMUSG00000032579	Hemk1	2310008M14Rik|AW049265	HemK methyltransferase family member 1	protein-coding	3.84900853850907	3.01701697127624	2.90846156671086	3.90536256616279	2.12231003995722	3.95381968491979	3.04732338185801	1.5270073069176	-0.811497268011408	0.290061691842424	0.795360911821054
Merged-chr11-20741838-7	chr11	20741693	20741893	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290545)	promoter-TSS (NM_001290545)	-237.0	NM_181411	216549.0	Mm.356580	NM_181411	ENSMUSG00000049659	Aftph	-	aftiphilin	protein-coding	5.63174786848004	5.26819459007237	6.10037584525831	5.24841309638516	5.27124286397429	4.86222362563252	5.71795560492582	5.64392498749722	-0.218200050128961	0.479225848577509	0.928092227925527
Merged-chr7-27328732-2	chr7	27328647	27328847	+	600.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_175641, exon 9 of 33)	exon (NM_175641, exon 9 of 33)	4901.0	NM_001113549	108075.0	Mm.272251	NM_175641	ENSMUSG00000040488	Ltbp4	2310046A13Rik	latent transforming growth factor beta binding protein 4	protein-coding	-1.2276735044944	-1.20138836966063	-1.21202761258731	-1.2207670035018	-1.22721880906488	-1.19908280133575	-0.751884428580139	-1.05459659029088	2.53706087379056	0.440403192504846	1
Merged-chr9-15357108-2	chr9	15357008	15357208	+	862.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_176976, intron 1 of 26)	intron (NM_176976, intron 1 of 26)	680.0	NM_176976	319675.0	Mm.218317	NM_176976	ENSMUSG00000046111	Cep295	5830418K08Rik|5832426L23Rik|Gm1131|Kiaa1731	centrosomal protein 295	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-4521655-4	chr8	4521566	4521766	+	996.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026058, intron 9 of 10)	intron (NM_026058, intron 9 of 10)	28261.0	NM_026058	67260.0	Mm.35511	NM_026058	ENSMUSG00000008206	Cers4	2900019C14Rik|Lass4|Trh1	ceramide synthase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-4259338-4	chr8	4259251	4259451	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183315)	promoter-TSS (NM_183315)	-77.0	NM_183315	330695.0	Mm.34210	NM_183315	ENSMUSG00000048644	Ctxn1	BC028881|Ctxn	cortexin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-37916498-2	chr13	37916398	37916598	+	656.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033615, exon 8 of 10)	non-coding (NR_033615, exon 8 of 10)	27627.0	NM_001177869	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-105405158-3	chr5	105405060	105405260	+	691.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10615.0	NM_001033550	433926.0	Mm.439781	NM_001033550	ENSMUSG00000070639	Lrrc8b	2210408K08Rik|R75581|Ta-lrrp|mKIAA0231	leucine rich repeat containing 8 family, member B	protein-coding	4.01749706445466	4.32412779539903	3.34250338146313	2.51704152268274	3.18355668477069	3.58068359174914	4.01559843041658	1.92066091516546	-0.509912990866468	0.45194798713919	0.91820577601875
Merged-chr4-63360239-2	chr4	63360139	63360339	+	653.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_013623)	TTS (NM_013623)	-2210.0	NM_011016	18406.0	Mm.14173	NM_011016	ENSMUSG00000061540	Orm2	Agp1|Orm-2	orosomucoid 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-59211912-4	chr2	59211833	59212033	+	978.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 1 of 20)	L3|LINE|CR1	51083.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-40837795-2	chr12	40837695	40837895	+	587.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 50 of 52)	intron (NM_172803, intron 50 of 52)	-186295.0	NM_053122	93757.0	Mm.363813	NM_053122	ENSMUSG00000056899	Immp2l	AI853880|IMP2|Tg(HLA-A/H2-D)2Enge	IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-99406074-3	chr5	99405983	99406183	+	698.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 2 of 3)	intron (NR_030692, intron 2 of 3)	-153156.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-34802333-4	chr2	34802275	34802475	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2463.0	NM_145522	227746.0	Mm.158705	NM_145522	ENSMUSG00000070953	Rabepk	8430412M01Rik|9530020D24Rik|AV073337|C87311|Rab9p40	Rab9 effector protein with kelch motifs	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-3273049-2	chr15	3272949	3273149	+	792.458374	f1_balb.idr|f1_c57bl6.idr	intron (NM_009155, intron 1 of 4)	intron (NM_009155, intron 1 of 4)	2072.0	NM_009155	20363.0	Mm.392203	NM_009155	ENSMUSG00000064373	Selenop	AU018766|D15Ucla1|Se-P|Sepp1|selp	selenoprotein P	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-117699458-2	chr5	117699358	117699558	+	580.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001312914, intron 10 of 19)	intron (NM_001312914, intron 10 of 19)	-167381.0	NM_008712	18125.0	Mm.44249	NM_008712	ENSMUSG00000029361	Nos1	2310005C01Rik|N-NOS|NC-NOS|NO|NOS|NOS-I|Nos-1|bNOS|nNOS	nitric oxide synthase 1, neuronal	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-79210110-4	chr11	79210051	79210251	+	913.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32873.0	NM_001042565	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41514228-3	chr19	41514127	41514327	+	796.311096	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4|LINE|L1	-11025.0	NM_001326287	627352.0	Mm.395111	NM_001326287		Morf4l1b	EG627352|Gm6747	mortality factor 4 like 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83070121-2	chr6	83070021	83070221	+	994.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_009392, exon 1 of 3)	5' UTR (NM_009392, exon 1 of 3)	104.0	NM_009392	21909.0	Mm.37	NM_009392	ENSMUSG00000068327	Tlx2	Enx|Hox11L.1|Hox11l1|NCX|Ncx1|Tlx1l1|Tlx1l2	T cell leukemia, homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-140671527-4	chr2	140671427	140671627	+	994.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178382)	promoter-TSS (NM_178382)	-51.0	NM_178382	71436.0	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115327678-4	chr5	115327526	115327726	+	998.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_036616, intron 1 of 4)	CpG	449.0	NR_036616	108014.0	Mm.287826	NM_025573	ENSMUSG00000029538	Srsf9	25kDa|2610029M16Rik|SRp30c|Sfrs9	serine/arginine-rich splicing factor 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-17977398-2	chr13	17977298	17977498	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	15953.0	NM_025904	67008.0	Mm.252918	NM_025904	ENSMUSG00000075054	Yae1d1	1600012F09Rik	Yae1 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-57476707-2	chr17	57476607	57476807	+	807.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355722, intron 19 of 22)	RLTR17B_Mm|LTR|ERVK	68607.0	NM_001104591	224916.0	Mm.469889	NM_001104591	ENSMUSG00000090655	Vmn2r120	EG224916	vomeronasal 2, receptor 120	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67597724-4	chr10	67597604	67597804	+	872.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25745.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-120456029-2	chr6	120455929	120456129	+	565.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7168.0	NM_008359	16172.0	Mm.4481	NM_008359	ENSMUSG00000002897	Il17ra	AW538159|Cdw217|Il17r|VDw217	interleukin 17 receptor A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-72461554-2	chr12	72461454	72461654	+	671.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030070, intron 10 of 24)	MLTR18D_MM|LTR|ERVK	19305.0	NM_001142729	78257.0	Mm.266280	NM_030070	ENSMUSG00000021090	Lrrc9	4921529O18Rik|4930432K16Rik	leucine rich repeat containing 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33414410-4	chr16	33414286	33414486	+	976.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358569, intron 1 of 8)	B3A|SINE|B2	13941.0	NM_001358569	22661.0	Mm.392667	NM_011749	ENSMUSG00000022811	Zfp148	2210405J08Rik|AI480666|AW045217|BERF-1|BFCOL1|ZBP-89|Znf148	zinc finger protein 148	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36570538-2	chr1	36570438	36570638	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001126046, intron 12 of 14)	intron (NM_001126046, intron 12 of 14)	-12157.0	NM_001126047	20353.0	Mm.29558	NM_001126047	ENSMUSG00000026121	Sema4c	AI426163|M-Sema F|Semacl1|Semaf|Semai|sema I	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-61954923-4	chr9	61954819	61955019	+	934.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028748, exon 8 of 8)	3' UTR (NM_028748, exon 8 of 8)	-8120.0	NM_024245	71819.0	Mm.259374	NM_024245	ENSMUSG00000032254	Kif23	3110001D19Rik|C87313|CHO1|Knsl5|MKLP-1|MKLP1	kinesin family member 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-164681810-4	chr1	164681723	164681923	+	899.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-114840.0	NM_019759	56429.0	Mm.28935	NM_019759	ENSMUSG00000026574	Dpt	1810032B19Rik|5033416F05Rik|EQ-1|Eq1	dermatopontin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-121769009-4	chr11	121768909	121769109	+	996.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61209.0	NM_029049	74675.0	Mm.61213	NM_029049	ENSMUSG00000039198	Ptchd3	4930451E13Rik|4933440L20Rik|RNDEu-3	patched domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-23805871-4	chr18	23805790	23805990	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153058, intron 1 of 6)	intron (NM_153058, intron 1 of 6)	1920.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-9914577-4	chr19	9914491	9914691	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-15058.0	NM_016692	16319.0	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46932886-2	chr8	46932786	46932986	+	550.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-54001.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117445268-2	chr8	117445168	117445368	+	797.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028941, intron 10 of 20)	intron (NM_028941, intron 10 of 20)	-7755.0	NR_106045	102466801.0		NR_106045	ENSMUSG00000099062	Mir7077	Gm27774|mmu-mir-7077	microRNA 7077	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-132007590-3	chr2	132007459	132007659	+	903.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175445, intron 3 of 10)	intron (NM_175445, intron 3 of 10)	22429.0	NM_175445	215653.0	Mm.204737	NM_175445	ENSMUSG00000027339	Rassf2	3830431H01Rik|9030412M04Rik|AI852669|AW495050	Ras association (RalGDS/AF-6) domain family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-12871266-3	chr10	12871196	12871396	+	821.611145	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus1|LINE|L1	-9561.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	0.561486535202624	0.803277418053941	0.871943171573147	0.832436187862841	0.443910734811509	0.319969992056053	0.313406569319662	0.307808019860733	-3.41866308104423	0.0599365280814826	1
Merged-chr12-84748276-4	chr12	84748171	84748371	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	24841.0	NM_023409	67963.0	Mm.282556	NM_023409	ENSMUSG00000021242	Npc2	2700012J19Rik|AA408070|AU045843|HE1	NPC intracellular cholesterol transporter 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-59842366-4	chr13	59842270	59842470	+	912.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	-19223.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-19105209-4	chr10	19105109	19105309	+	982.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36540.0	NR_038021	100504265.0	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31414898-4	chr14	31414803	31415003	+	924.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011894, intron 2 of 8)	intron (NM_011894, intron 2 of 8)	2774.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-91522225-1	chr13	91522125	91522325	+	558.0	f1_balb.idr	intron (NM_001360776, intron 1 of 15)	MTC|LTR|ERVL-MaLR	61128.0	NM_024186	66970.0	Mm.343095	NM_024186	ENSMUSG00000003992	Ssbp2	1500004K09Rik|2310079I02Rik|9330163K02Rik|A830008M03Rik|AU067692|AW558684|Hspc116|SSDP2	single-stranded DNA binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-17934069-1	chr6	17933969	17934169	+	1000.0	f1_c57bl6.idr	intron (NM_022332, intron 14 of 15)	intron (NM_022332, intron 14 of 15)	96376.0	NM_023653	22413.0	Mm.33653	NM_023653	ENSMUSG00000010797	Wnt2	2610510E18Rik|Int1l1|Irp|Mirp|Wnt-2|Wnt2a	wingless-type MMTV integration site family, member 2	protein-coding	-0.570176278079204	-0.828172689240768	-0.832418311687752	-0.201448708538692	-0.838185769364555	-0.825368027620195	-0.831734101493321	-0.834392483589968	-3.09671510812096	0.295048739405684	1
Merged-chr11-59229959-4	chr11	59229855	59230055	+	986.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1688.0	NM_007476	11840.0	Mm.371546	NM_007476	ENSMUSG00000048076	Arf1	-	ADP-ribosylation factor 1	protein-coding	4.75103031171318	3.73412007690198	4.66038036832413	4.70089676236655	3.85948950928322	4.10477202880762	4.29747495312503	4.22789161189451	-0.52180660471567	0.211186740296462	0.700323931057359
Merged-chr19-23139845-2	chr19	23139745	23139945	+	950.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1381.0	NM_010638	16601.0	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|Gm9971	Kruppel-like factor 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-128766979-4	chr6	128766889	128767089	+	996.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	21652.0	NM_001159904	17059.0	Mm.480764	NM_008527	ENSMUSG00000030325	Klrb1c	AI462337|CD161|Klrb1b|Ly-59|Ly55c|Ly59|NK-RP1|NK1.1|NKR-P1.9|NKRP1|NKRP140|Nk-1|Nk-1.2|Nk1|Nk1.2|Nkrp1b|Nkrp1c|ly-55c	killer cell lectin-like receptor subfamily B member 1C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-76254522-2	chr12	76254422	76254622	+	674.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138745)	promoter-TSS (NM_138745)	-710.0	NM_138745	108156.0	Mm.29584	NM_138745	ENSMUSG00000021048	Mthfd1	Dcs|E430024A07Rik|Mthfd	methylenetetrahydrofolate dehydrogenase (NADP+ dependent), methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-38472159-2	chr16	38472059	38472259	+	891.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359898, intron 1 of 5)	PB1D7|SINE|Alu	13226.0	NM_009855	12519.0	Mm.89474	NM_009855	ENSMUSG00000075122	Cd80	B71|Cd28l|Ly-53|Ly53|MIC17|TSA1	CD80 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-10883506-3	chr8	10883420	10883620	+	939.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1066.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-61572874-2	chr17	61572774	61572974	+	631.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	1308443.0	NM_207654	13640.0	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-56173279-4	chr13	56173152	56173352	+	790.820801	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001168615)	TTS (NM_001168615)	5633.0	NM_145976	212937.0	Mm.116697	NM_145976	ENSMUSG00000049625	Tifab	-	TRAF-interacting protein with forkhead-associated domain, family member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-121204401-4	chr11	121204307	121204507	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001001333)	promoter-TSS (NM_001001333)	-26.0	NM_001001333	238023.0	Mm.275130	NM_001001333	ENSMUSG00000039307	Hexdc	BC069960	hexosaminidase (glycosyl hydrolase family 20, catalytic domain) containing	protein-coding	4.60013353286756	4.77686498015115	3.83737969333525	4.12600690886376	3.21345787358552	4.6238943163281	4.27124266124863	4.02656110576968	-0.356905444462628	0.442766049510284	0.911647291190116
Merged-chr11-88162252-4	chr11	88162145	88162345	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198013, intron 1 of 10)	intron (NM_198013, intron 1 of 10)	-7320.0	NM_001172099	103841.0	Mm.374846	NM_198013	ENSMUSG00000018378	Cuedc1	AI841487|C330016O16Rik	CUE domain containing 1	protein-coding	2.46982905625435	1.58272714415414	3.02089377289015	2.48275841081048	2.97115314449087	2.8125901723295	3.98750148742912	3.12382712391354	1.46331994659536	0.0483459216727208	0.319647888443775
Merged-chr7-44854699-6	chr7	44854553	44854753	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001290695, exon 4 of 4)	exon (NM_001290695, exon 4 of 4)	-2493.0	NM_021549	59047.0	Mm.238254	NM_021549	ENSMUSG00000002963	Pnkp	1810009G08Rik|PNK	polynucleotide kinase 3'- phosphatase	protein-coding	2.79543801593308	3.14854611299878	4.09158896713576	3.45093354905624	3.36915685334486	2.01241157385965	3.06485817889375	2.74134621150105	-0.927028629216986	0.167880921504349	0.633938930825383
Merged-chr1-171561438-4	chr1	171561326	171561526	+	923.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018729, intron 1 of 8)	intron (NM_018729, intron 1 of 8)	2233.0	NM_018729	18106.0	Mm.2299	NM_018729	ENSMUSG00000004709	Cd244	2B4|C9.1|F730046O15Rik|Ly90|NAIL|NKR2B4|Nmrk|SLAMF4	CD244 natural killer cell receptor 2B4	protein-coding	-1.3681463318974	-1.33624156493372	-1.34650167276047	-0.80669348975676	-1.36769697821496	-1.33401815676661	-1.34417900924365	-1.3534210303531	-2.3580830592467	0.49586638340111	1
Merged-chr12-86824187-4	chr12	86824095	86824295	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60619.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-6244745-3	chr18	6244640	6244840	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MamGypLTR1b|LTR|Gypsy	-3216.0	NM_008448	16573.0	Mm.223744	NM_008448	ENSMUSG00000006740	Kif5b	AL022807|Khc|Khcs|Kns1|Ukhc	kinesin family member 5B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-135299198-3	chr6	135299081	135299281	+	903.4111330000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11203.0	NM_029595	76400.0	Mm.293018	NM_029595	ENSMUSG00000047104	Pbp2	1700023A18Rik|AI326308|Pebp-2|Pebp2	phosphatidylethanolamine binding protein 2	protein-coding	2.96215610962119	3.23152491752362	2.09221615469245	2.03259707646255	2.98651192283709	3.34017011311929	2.96175771123981	3.21133645585273	0.799002924074074	0.256839723334376	0.755701651669989
Merged-chr6-91582471-1	chr6	91582371	91582571	+	944.3333130000001	f0_balb.idr	Intergenic	L1MC4a|LINE|L1	66436.0	NM_026309	67678.0	Mm.246693	NM_026309	ENSMUSG00000034192	Lsm3	1010001J12Rik|2610005D18Rik|6030401D18Rik|SMX4|USS2	LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153773739-2	chr2	153773639	153773839	+	616.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_007896)	TTS (NM_007896)	-7140.0	NR_036629	100504221.0	Mm.246778	NM_177849	ENSMUSG00000044083	Efcab8	A630008I04|EG329541	EF-hand calcium binding domain 8	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-72161291-3	chr5	72161189	72161389	+	945.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178599, intron 3 of 4)	intron (NM_178599, intron 3 of 4)	6900.0	NM_001356611	27784.0	Mm.44223	NM_178599	ENSMUSG00000029213	Commd8	C77770|D5Buc26e	COMM domain containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6418329-4	chr19	6418229	6418429	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001205235)	promoter-TSS (NM_001205235)	-409.0	NM_001205235	18190.0	Mm.329616	NM_020253	ENSMUSG00000033768	Nrxn2	6430591O13Rik|mKIAA0921	neurexin II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-96449775-2	chr9	96449675	96449875	+	653.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4|LINE|L1	28900.0	NM_011279	19823.0	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-32183286-4	chr19	32183193	32183393	+	930.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 5 of 9)	L1MC4a|LINE|L1	27720.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-118897345-2	chr2	118897348	118897548	+	663.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4167.0	NM_001045523	228536.0	Mm.330487	NM_001045523	ENSMUSG00000040007	Bahd1	AL022997|AW541238|Gm117|mKIAA0945	bromo adjacent homology domain containing 1	protein-coding	-0.543664766931585	-0.532006365586127	0.0376075838321817	-0.538775426911995	-0.542937697421192	-0.531144531936576	-0.534985539388068	0.00551008014451421	-0.102522031902803	0.970916738380464	1
Merged-chr7-127110836-3	chr7	127110735	127110935	+	836.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133686, intron 1 of 3)	intron (NM_133686, intron 1 of 3)	11194.0	NM_133686	67375.0	Mm.26928	NM_133686	ENSMUSG00000030674	Qprt	2410027J01Rik|AI647766|QPRTase	quinolinate phosphoribosyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-70678868-4	chr9	70678773	70678973	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007399)	promoter-TSS (NM_007399)	-109.0	NM_007399	11487.0	Mm.3037	NM_007399	ENSMUSG00000054693	Adam10	1700031C13Rik|MADM|kuz|kuzbanian	a disintegrin and metallopeptidase domain 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-3135726-2	chr11	3135634	3135834	+	1000.0	f0_balb.idr|f1_balb.idr	exon (NM_030207, exon 26 of 33)	exon (NM_030207, exon 26 of 33)	11713.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-11276722-7	chr12	11276609	11276809	+	965.2551269999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361252, intron 4 of 9)	(TG)n|Simple_repeat|Simple_repeat	10823.0	NM_025695	67241.0	Mm.173953	NM_025695	ENSMUSG00000020608	Smc6	2810489L22Rik|3830418C19Rik|AA990493|AU018782|AW742439|SMC-6|Smc6l1|mKIAA4103	structural maintenance of chromosomes 6	protein-coding	2.4411393086129	3.0113400417729	3.51548169138449	2.70854284423052	2.32451007480009	3.42875154093957	3.7305619498004	3.04322670644908	0.420424890101221	0.535272052040572	0.95286627222167
Merged-chr5-127614998-5	chr5	127614880	127615080	+	695.200012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133895, intron 1 of 7)	intron (NM_133895, intron 1 of 7)	2412.0	NM_133895	100561.0	Mm.28506	NM_133895	ENSMUSG00000029416	Slc15a4	AA987064|AW742963|C130069N12Rik|PHT1|PTR4	solute carrier family 15, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-97783758-2	chr15	97783658	97783858	+	560.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026353)	promoter-TSS (NM_026353)	-607.0	NM_026353	67739.0	Mm.28955	NM_026353	ENSMUSG00000081534	Slc48a1	4930570C03Rik	solute carrier family 48 (heme transporter), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-34193850-4	chr10	34193728	34193928	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172508, intron 1 of 5)	intron (NM_172508, intron 1 of 5)	13723.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-125387165-1	chr10	125387065	125387265	+	543.0	f1_balb.idr	Intergenic	Intergenic	-58202.0	NM_001358496	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-5592630-4	chr2	5592533	5592733	+	831.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290374, intron 1 of 9)	intron (NM_001290374, intron 1 of 9)	83413.0	NM_001290376	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	2.34442065181622	1.80934674319793	1.2750312051671	1.7004534997021	3.06224686973832	2.75853626349131	2.10092378226881	2.03396711469731	1.66889577146274	0.0765072908610192	0.419915130718439
Merged-chr1-191224439-4	chr1	191224342	191224542	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_151547)	promoter-TSS (NR_151547)	-12.0	NR_151547	100504360.0	Mm.16927	NM_001033188		D730003I15Rik	AU020850	RIKEN cDNA D730003I15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-127318528-1	chr1	127318428	127318628	+	542.0	f0_balb.idr	intron (NM_145128, intron 3 of 17)	CT-rich|Low_complexity|Low_complexity	113542.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-115714378-3	chr3	115714282	115714482	+	974.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007901, intron 1 of 1)	intron (NM_007901, intron 1 of 1)	673.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	0.0810652176589141	0.0940884288832136	0.498495303154425	0.0864804015297465	0.0818661932956736	0.739017043521017	0.507110099846573	0.0870544475555897	1.57245994606718	0.479507509897091	1
Merged-chr11-54067341-2	chr11	54067241	54067441	+	888.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019417, intron 1 of 6)	intron (NM_019417, intron 1 of 6)	1676.0	NM_019417	30794.0	Mm.21830	NM_019417	ENSMUSG00000020388	Pdlim4	Ril	PDZ and LIM domain 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-50120292-4	chr17	50120215	50120415	+	904.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181397, intron 2 of 9)	intron (NM_181397, intron 2 of 9)	70182.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	6.84143435446458	6.54942995372821	6.91600523936213	7.13606100784171	4.5358062746208	4.03404473276516	4.35625463188147	5.49514689944462	-2.36938451886712	5.83800593403037e-16	4.37777469978102e-13
Merged-chr9-107686050-1	chr9	107685950	107686150	+	848.0	f1_balb.idr	intron (NM_011349, intron 11 of 17)	intron (NM_011349, intron 11 of 17)	-6458.0	NM_008140	14685.0	Mm.284853	NM_008140	ENSMUSG00000034837	Gnat1	Gnat-1|Ird1|Ird2|Tralpha|irdc|irdr|transducin	guanine nucleotide binding protein, alpha transducing 1	protein-coding	0.479877017312137	1.42746083664964	1.02281543454246	0.493867480470156	0.481973097391665	1.33716826803454	0.50454810577185	0.990716211942761	-0.188021040300606	0.913268821380311	0.998431161219273
Merged-chr7-101450584-4	chr7	101450477	101450677	+	986.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001143849)	promoter-TSS (NM_001143849)	57.0	NM_001243758	207728.0	Mm.247564	NM_001008548	ENSMUSG00000030653	Pde2a	CGS-PDE|cGSPDE	phosphodiesterase 2A, cGMP-stimulated	protein-coding	4.59446018272803	4.36557695851558	3.19490550196864	3.31586353601225	4.18814305684306	4.08338319558685	4.50728203809729	3.22862895232517	0.0838385431301097	0.874034329448683	0.998431161219273
Merged-chr4-83525413-4	chr4	83525300	83525500	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355378)	promoter-TSS (NM_001355378)	-145.0	NM_001355549	320226.0	Mm.180032	NM_029117	ENSMUSG00000052407	Ccdc171	4930418J05Rik|4930473A06Rik|A330015D16Rik	coiled-coil domain containing 171	protein-coding	7.20557764925036	7.30148131280877	6.93475466967268	7.4521266900062	7.47341816221599	7.44509616828365	7.24366087936453	7.32766254491232	0.146425460967995	0.364684550396447	0.860638323299876
Merged-chr4-101254221-4	chr4	101254130	101254330	+	772.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146145, intron 1 of 24)	intron (NM_146145, intron 1 of 24)	11052.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-73541772-4	chr18	73541673	73541873	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30932.0	NM_001039214	240396.0	Mm.24131	NM_001039214	ENSMUSG00000037253	Mex3c	A130001D14Rik|BC035207|BM-013|Rkhd2	mex3 RNA binding family member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-103414172-2	chr11	103414072	103414272	+	835.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-1508.0	NM_183034	353047.0	Mm.18556	NM_183034	ENSMUSG00000034247	Plekhm1	AP162|B2|BC038943|D330036J23Rik	pleckstrin homology domain containing, family M (with RUN domain) member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-79511770-4	chr14	79511676	79511876	+	952.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007920, intron 1 of 8)	ORR1E|LTR|ERVL-MaLR	-3898.0	NM_001286412	13709.0	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-104814911-4	chr9	104814814	104815014	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028719, intron 2 of 15)	intron (NM_028719, intron 2 of 15)	-238354.0	NM_053159	94062.0	Mm.29746	NM_053159	ENSMUSG00000032563	Mrpl3	2010320L16Rik|5930422H18Rik|AA407889	mitochondrial ribosomal protein L3	protein-coding	1.3230215809187	0.585515169488069	1.47634630437156	0.562396254636239	0.887338502261626	0.588398249747752	1.6763753364339	0.564185407579273	-0.116194645755243	0.943909589609053	0.998431161219273
Merged-chr10-81383398-2	chr10	81383381	81383581	+	656.599976	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133964)	promoter-TSS (NM_133964)	-947.0	NM_133964	102115.0	Mm.294975	NM_133964	ENSMUSG00000078440	Dohh	1110033C18Rik|AI585913|AL022869|Hlrc1	deoxyhypusine hydroxylase/monooxygenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-96698165-1	chr15	96698065	96698265	+	685.0	f0_c57.idr	intron (NM_175121, intron 3 of 15)	intron (NM_175121, intron 3 of 15)	1563.0	NM_001355633	67760.0	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-58520509-2	chr13	58520409	58520609	+	650.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	90368.0	NM_022317	114304.0	Mm.18188	NM_022317	ENSMUSG00000021553	Slc28a3	Cnt3	solute carrier family 28 (sodium-coupled nucleoside transporter), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-72320927-4	chr8	72320838	72321038	+	954.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008452, exon 3 of 3)	3' UTR (NM_008452, exon 3 of 3)	1876.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-137585128-2	chr5	137585028	137585228	+	746.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_152864, intron 12 of 12)	intron (NR_152864, intron 12 of 12)	10593.0	NR_152864	50765.0	Mm.21757	NM_015799	ENSMUSG00000029716	Tfr2	Trfr2	transferrin receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-25392632-4	chr15	25392526	25392726	+	997.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027395, intron 1 of 1)	L1MC1|LINE|L1	21138.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-43786232-2	chr5	43786132	43786332	+	951.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-4083.0	NM_178729	242960.0	Mm.25794	NM_178729	ENSMUSG00000039753	Fbxl5	Fbl4|Fir4	F-box and leucine-rich repeat protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-29777373-2	chr5	29777273	29777473	+	740.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359198, intron 8 of 8)	intron (NM_001359198, intron 8 of 8)	-41437.0	NR_028426	332993.0	Mm.473746	NR_028426		Gm5129	EG332993	predicted gene 5129	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-118136237-4	chr4	118136142	118136342	+	935.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001161823)	TTS (NM_001161823)	-1296.0	NM_001161774	20441.0	Mm.251002	NM_009176	ENSMUSG00000028538	St3gal3	ST3GalIII|ST3N|Siat3|Siat6	ST3 beta-galactoside alpha-2,3-sialyltransferase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-12322582-2	chr15	12322482	12322682	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025673, intron 1 of 3)	intron (NM_025673, intron 1 of 3)	1086.0	NM_025673	66629.0	Mm.157655	NM_025673	ENSMUSG00000022200	Golph3	4733401N08Rik|5730410D03Rik|AW413496	golgi phosphoprotein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-32683586-2	chr16	32683486	32683686	+	653.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_016788)	TTS (NM_016788)	10432.0	NM_001289443	51789.0	Mm.251115	NM_016788	ENSMUSG00000022791	Tnk2	Ack|Ack-1|Ack1|Cdgip|Pyk1	tyrosine kinase, non-receptor, 2	protein-coding	-1.7024385483431	-1.81249224917775	-1.82134771053534	-1.82862185015837	-1.70038292649591	-1.81057323376012	-1.81934302819017	-1.82731978264371	0.0376840119903864	0.991491645451152	1
Merged-chr9-58899985-7	chr9	58899900	58900100	+	883.5238039999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042752, intron 20 of 27)	intron (NM_001042752, intron 20 of 27)	76488.0	NM_001081192	330953.0	Mm.151967	NM_001081192	ENSMUSG00000032338	Hcn4	Bcng3|Hcn3	hyperpolarization-activated, cyclic nucleotide-gated K+ 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117839582-1	chr10	117839482	117839682	+	563.0	f0_balb.idr	intron (NM_024457, intron 1 of 7)	Charlie1a|DNA|hAT-Charlie	6392.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-34088392-3	chr13	34088278	34088478	+	959.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_046184, intron 4 of 4)	intron (NR_046184, intron 4 of 4)	-10370.0	NM_009450	22151.0	Mm.422827	NM_009450	ENSMUSG00000058672	Tubb2a	M(beta)2|Tubb2	tubulin, beta 2A class IIA	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-120635211-4	chr7	120635094	120635294	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025899)	promoter-TSS (NM_025899)	5.0	NM_025899	67003.0	Mm.334206	NM_025899	ENSMUSG00000030884	Uqcrc2	1500004O06Rik	ubiquinol cytochrome c reductase core protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-77346693-3	chr11	77346589	77346789	+	648.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177710, intron 2 of 14)	intron (NM_177710, intron 2 of 14)	-1591.0	NM_001291190	237860.0	Mm.440381	NM_177710	ENSMUSG00000037926	Ssh2	SSH-2|SSH-2L|mSSH-2L	slingshot protein phosphatase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-99348526-2	chr5	99348426	99348626	+	748.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-95599.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-60940136-4	chr19	60940040	60940240	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018869, intron 1 of 15)	intron (NM_018869, intron 1 of 15)	50391.0	NM_018869	14773.0	Mm.279400	NM_018869	ENSMUSG00000003228	Grk5	Gprk5	G protein-coupled receptor kinase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-112326275-4	chr5	112326165	112326365	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018783)	promoter-TSS (NM_018783)	-104.0	NM_018783	54723.0	Mm.172947	NM_018783	ENSMUSG00000029345	Tfip11	2810002G02Rik|AF097181|AW046167|Srr1|TIP33|Tip39	tuftelin interacting protein 11	protein-coding	5.78098074215498	5.11294539630697	5.89062216908812	5.36949269454751	5.80156643235623	4.86643966597802	5.64646691128782	5.55186366279523	-0.0684849481654413	0.819512501650842	0.998431161219273
Merged-chr2-167839435-4	chr2	167839337	167839537	+	924.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-92890.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-38436500-3	chr18	38436397	38436597	+	758.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355749, intron 1 of 7)	L1M4|LINE|L1	17590.0	NM_001355749	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-16326081-4	chr19	16325997	16326197	+	989.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008139, intron 3 of 6)	intron (NM_008139, intron 3 of 6)	-11093.0	NR_105832	102465218.0		NR_105832	ENSMUSG00000098718	Mir496b	Gm28028|mmu-mir-496b	microRNA 496b	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117339589-4	chr8	117339461	117339661	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	-9609.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-107058763-1	chr10	107058663	107058863	+	545.0	f1_balb.idr	intron (NM_198636, intron 2 of 10)	intron (NM_198636, intron 2 of 10)	64901.0	NM_001142804	380660.0	Mm.336072	NM_198636	ENSMUSG00000035948	Acss3	8430416H19Rik|Gm874	acyl-CoA synthetase short-chain family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31017294-2	chr14	31017194	31017394	+	757.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_153547, exon 3 of 15)	exon (NM_153547, exon 3 of 15)	-1022.0	NR_028523	100217423.0		NR_028523		Snord19	MBII-108	small nucleolar RNA, C/D box 19	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-122127962-3	chr7	122127829	122128029	+	970.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001289842, exon 4 of 12)	exon (NM_001289842, exon 4 of 12)	5017.0	NM_001289844	233826.0	Mm.38348	NM_172744	ENSMUSG00000044702	Palb2	BC066140	partner and localizer of BRCA2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-56121844-4	chr4	56121696	56121896	+	947.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-589321.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-59610896-4	chr16	59610805	59611005	+	927.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-26040.0	NR_040564	75145.0	Mm.399348	NR_040564		4930547E14Rik	-	RIKEN cDNA 4930547E14 gene	ncRNA	3.49816551022128	3.31289174952803	3.35554761559732	3.39624693414065	1.89362851134911	1.6014570752632	2.71918020322739	2.74853049742517	-1.92467005488722	0.00718379567957954	0.0861378473976655
Merged-chr6-113331807-2	chr6	113331707	113331907	+	633.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_149720, exon 4 of 7)	non-coding (NR_149720, exon 4 of 7)	4831.0	NM_010957	18294.0	Mm.43612	NM_010957	ENSMUSG00000030271	Ogg1	Mmh	8-oxoguanine DNA-glycosylase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-29400717-2	chr19	29400574	29400774	+	692.208374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10245.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-17361000-2	chr18	17360900	17361100	+	642.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-125518.0	NR_033607	664619.0	Mm.250005	NR_033607		4921533I20Rik	-	PRP18 pre-mRNA processing factor 18 homolog pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81103049-2	chr15	81102949	81103149	+	927.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001082536, intron 2 of 13)	intron (NM_001082536, intron 2 of 13)	1998.0	NM_153049	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19365426-2	chr7	19365326	19365526	+	649.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001010836, intron 1 of 12)	intron (NM_001010836, intron 1 of 12)	4210.0	NM_001010836	333654.0	Mm.333640	NM_001010836	ENSMUSG00000040734	Ppp1r13l	AV260376|IASPP|Nkip1|wa3	protein phosphatase 1, regulatory (inhibitor) subunit 13 like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-79143773-3	chr3	79143676	79143876	+	789.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001099624, intron 1 of 23)	intron (NM_001099624, intron 1 of 23)	1111.0	NM_001310536	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	-1.3681463318974	-1.33624156493372	-1.34650167276047	-0.80669348975676	-1.36769697821496	-1.33401815676661	-1.34417900924365	-1.3534210303531	-2.3580830592467	0.49586638340111	1
Merged-chr14-70443343-4	chr14	70443234	70443434	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164082)	promoter-TSS (NM_001164082)	-107.0	NM_001164082	67065.0	Mm.20420	NM_025945	ENSMUSG00000000776	Polr3d	2810426M17Rik|44kDa|AI326118|AW489084|BN51T|RPC4|TSBN51	polymerase (RNA) III (DNA directed) polypeptide D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-137747669-4	chr6	137747538	137747738	+	901.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011499, intron 7 of 9)	intron (NM_011499, intron 7 of 9)	-6939.0	NM_172733	232449.0	Mm.29181	NM_172733	ENSMUSG00000030225	Dera	2010002D22Rik|2500002K03Rik|DEOC	deoxyribose-phosphate aldolase (putative)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-45390791-4	chr13	45390628	45390828	+	995.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153789, intron 1 of 6)	intron (NM_153789, intron 1 of 6)	986.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25731528-3	chr7	25731428	25731628	+	830.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144922, intron 10 of 14)	intron (NM_144922, intron 10 of 14)	-12475.0	NM_028771	52132.0	Mm.278798	NM_028771	ENSMUSG00000002608	Ccdc97	1200014H14Rik|2810446P04Rik|AA545218|D7Ertd462e	coiled-coil domain containing 97	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-5779052-4	chr13	5778975	5779175	+	890.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	79017.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-103159192-4	chr11	103159085	103159285	+	992.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11953.0	NM_001077698	57778.0	Mm.138913	NM_019679	ENSMUSG00000055805	Fmnl1	8030453N10Rik|AI553564|Fmnl|Fnrl|Frls	formin-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-14513765-1	chr7	14513665	14513865	+	609.0	f0_balb.idr	Intergenic	L1_Mur3|LINE|L1	-20839.0	NM_001184981	638251.0	Mm.482063	NM_001184981	ENSMUSG00000094156	Sult2a7	EG638251|Gm7231	sulfotransferase family 2A, dehydroepiandrosterone (DHEA)-preferring, member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-40777334-7	chr4	40777242	40777442	+	896.904785	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19457.0	NM_021535	74255.0	Mm.289929	NM_021535	ENSMUSG00000028409	Smu1	2600001O03Rik|2610203K23Rik|AB044414|AI845086|AW556129|Bwd	smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-75725097-4	chr2	75725011	75725211	+	975.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20448.0	NM_010902	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-61068977-2	chr18	61068877	61069077	+	850.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008809, intron 10 of 22)	intron (NM_008809, intron 10 of 22)	23827.0	NM_008809	18596.0	Mm.4146	NM_008809	ENSMUSG00000024620	Pdgfrb	AI528809|CD140b|PDGFR-1|Pdgfr	platelet derived growth factor receptor, beta polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-36818349-1	chr19	36818249	36818449	+	574.0	f0_balb.idr	Intergenic	B3A|SINE|B2	-15883.0	NM_001163635	74493.0	Mm.249310	NM_001163635	ENSMUSG00000024811	Tnks2	5430432P15Rik|AA517131|AI662480|ARTD6|TNKS-2|Tank2	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100818263-2	chr11	100818163	100818363	+	654.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113563, intron 1 of 18)	(CA)n|Simple_repeat|Simple_repeat	4307.0	NM_011489	20851.0	Mm.34064	NM_011489	ENSMUSG00000020919	Stat5b	-	signal transducer and activator of transcription 5B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-121843506-6	chr5	121843436	121843636	+	938.205566	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2c|LINE|L2	-5461.0	NM_175474	231717.0	Mm.12654	NM_175474	ENSMUSG00000044134	Fam109a	A230106M15Rik|AU017694|IPIP27A|Ses1	family with sequence similarity 109, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90565751-2	chr2	90565621	90565821	+	751.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	MIRb|SINE|MIR	14926.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	-0.673843794394807	-0.467495968544031	0.00727244597395016	-0.669396677775114	-0.525535536421251	-0.662451477239144	-0.665947985909935	-0.668928343274281	-2.38607671714357	0.374314076430188	1
Merged-chr17-69145356-2	chr17	69145256	69145456	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355732, intron 1 of 21)	intron (NM_001355732, intron 1 of 21)	-11388.0	NM_013813	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-53153372-1	chr18	53153272	53153472	+	743.0	f0_c57.idr	Intergenic	Lx7|LINE|L1	-22920.0	NM_001357463	67804.0	Mm.252171	NM_026386	ENSMUSG00000034484	Snx2	0610030A03Rik	sorting nexin 2	protein-coding	0.349771008959914	0.894827091747028	0.96793057547303	0.360328099402607	0.351347837455779	0.905024841218287	0.979769474538199	0.361433352888149	0.0402392161014669	0.982690957169172	1
Merged-chr8-124186309-2	chr8	124186209	124186409	+	722.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45085.0	NM_139272	108148.0	Mm.33808	NM_139272	ENSMUSG00000089704	Galnt2	AI480629	polypeptide N-acetylgalactosaminyltransferase 2	protein-coding	-1.20406370813143	-1.56956373024278	-1.57884638916872	-1.58647144159385	-1.598104728449	-1.56755213932999	-1.57674499865798	-1.58510656085539	-1.70745470802464	0.626337835847419	1
Merged-chr4-105643207-3	chr4	105643091	105643291	+	971.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	485844.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	4.04294863202071	3.03766021724285	1.66618152438601	2.68161706452857	5.17979570008987	3.9603932217335	3.31106958415338	4.12530399832023	1.66875702127673	0.0129428778259416	0.13101581194255
Merged-chr1-155018613-3	chr1	155018523	155018723	+	760.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11B|LTR|ERVK	64641.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117081446-2	chr11	117081346	117081546	+	808.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4098.0	NR_105853	102465258.0		NR_105853	ENSMUSG00000104740	Mir6516	mmu-mir-6516	microRNA 6516	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-29094628-6	chr17	29094532	29094732	+	993.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007669, intron 1 of 2)	CpG	863.0	NM_007669	12575.0	Mm.195663	NM_007669	ENSMUSG00000023067	Cdkn1a	CAP20|CDKI|CIP1|Cdkn1|P21|SDI1|Waf1|mda6|p21Cip1|p21WAF	cyclin-dependent kinase inhibitor 1A (P21)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-62332124-4	chr14	62332077	62332277	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026001, intron 1 of 10)	CpG	109.0	NM_026001	67153.0	Mm.26040	NM_026001	ENSMUSG00000021932	Rnaseh2b	1110019N06Rik|2610207P08Rik|Dleu8	ribonuclease H2, subunit B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-88209952-4	chr8	88209875	88210075	+	797.19165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164499, intron 2 of 11)	(TG)n|Simple_repeat|Simple_repeat	10762.0	NM_001164498	214627.0	Mm.491211	NM_001164497	ENSMUSG00000036779	Papd5	5730445M16Rik|5830428A09	PAP associated domain containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-86212388-4	chr15	86212310	86212510	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2049.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-7176652-3	chr17	7176551	7176751	+	626.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011299, intron 1 of 20)	intron (NM_011299, intron 1 of 20)	6536.0	NM_011299	20112.0	Mm.268383	NM_011299	ENSMUSG00000023809	Rps6ka2	90kDa|D17Wsu134e|Rps6ka-rs1|Rsk3|p90rsk|pp90rsk	ribosomal protein S6 kinase, polypeptide 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-154041076-2	chr1	154040974	154041174	+	740.166626	f0_balb.idr|f0_c57.idr	Intergenic	MLTR14|LTR|ERV1	141145.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-64639763-4	chr14	64639658	64639858	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12773.0	NM_001081177	16554.0	Mm.23611	NM_001081177	ENSMUSG00000060012	Kif13b	5330429L19Rik|6030414C01|AI429803|C130021D12Rik|GAKIN	kinesin family member 13B	protein-coding	4.19220750971832	3.68113452123088	4.32021180406997	4.99317424772599	3.68241695979704	3.60804807096963	3.989035243311	4.11843719542199	-0.699876256563863	0.130859000655947	0.566336454410263
Merged-chr11-115270653-3	chr11	115270453	115270653	+	811.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007997, intron 6 of 11)	MT2B|LTR|ERVL	-3310.0	NM_010350	14813.0	Mm.39090	NM_010350	ENSMUSG00000020734	Grin2c	GluN2C|NMDAR2C|NR2C	glutamate receptor, ionotropic, NMDA2C (epsilon 3)	protein-coding	1.53179840797596	1.34373963574679	1.30439017678108	1.51438889693297	1.34609904329956	1.6238398306635	1.1560172404015	1.2789939134635	-0.268274989351752	0.817489776705834	0.998431161219273
Merged-chr8-95915087-3	chr8	95915026	95915226	+	747.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26761.0	NM_010325	14719.0	Mm.230169	NM_010325	ENSMUSG00000031672	Got2	AL022787|FABP-pm|Got-2|Kyat4|mAspAT	glutamatic-oxaloacetic transaminase 2, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-34927322-4	chr6	34927238	34927438	+	840.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009292, intron 1 of 8)	intron (NM_009292, intron 1 of 8)	6390.0	NM_009292	20899.0	Mm.5171	NM_009292	ENSMUSG00000029848	Stra8	-	stimulated by retinoic acid gene 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-72327701-2	chr8	72327643	72327843	+	718.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4|SINE|ID	8681.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	-0.0509808605848605	-0.48150028619924	-0.179739967409392	-0.487378990824325	-0.490967565190315	-0.480748043930372	-0.172919604113346	-0.486933793878006	-1.28655897383486	0.626873825081153	1
Merged-chr8-119817706-4	chr8	119817620	119817820	+	941.133301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028071, intron 3 of 3)	(ACCTG)n|Simple_repeat|Simple_repeat	22859.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71195239-4	chr17	71195142	71195342	+	947.224976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022882, intron 1 of 19)	intron (NM_022882, intron 1 of 19)	-9412.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-147896035-4	chr5	147895947	147896147	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1232.0	NM_027872	71706.0	Mm.153218	NM_027872	ENSMUSG00000029650	Slc46a3	1200006F02Rik	solute carrier family 46, member 3	protein-coding	3.21580013989512	4.45126995027931	3.83402730305149	4.20229121110095	3.49219614820104	3.05325494337533	4.3943341657181	4.36271914410561	-0.0667328262463857	0.899439448095966	0.998431161219273
Merged-chr1-139467918-4	chr1	139467820	139468020	+	945.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009791, exon 8 of 28)	exon (NM_009791, exon 8 of 28)	13147.0	NM_009791	12316.0	Mm.168523	NM_009791	ENSMUSG00000033952	Aspm	Calmbp1|D330028K02Rik|MCPH5|Sha1	abnormal spindle microtubule assembly	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-75101061-2	chr8	75100961	75101161	+	726.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_010442)	TTS (NM_010442)	7443.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3975208-4	chr4	3975108	3975308	+	888.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35784.0	NR_104356	66433.0	Mm.27406	NM_181391	ENSMUSG00000042198	Chchd7	1810049H20Rik	coiled-coil-helix-coiled-coil-helix domain containing 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-118484207-4	chr7	118484108	118484308	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001033380)	TTS (NM_001033380)	7767.0	NM_001033380	319622.0	Mm.323386	NM_001033380	ENSMUSG00000095115	Itpripl2	C130081G24|E030018N11Rik	inositol 1,4,5-triphosphate receptor interacting protein-like 2	protein-coding	4.09732890127732	4.99390721022798	3.64327861551559	4.59976061754064	5.16910027219678	5.06544269039278	4.66455664803217	4.09883284943255	0.486711117547749	0.251690068490923	0.749698831323701
Merged-chr17-73927584-2	chr17	73927484	73927684	+	793.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011723, intron 6 of 35)	intron (NM_011723, intron 6 of 35)	22612.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-142893988-2	chr7	142893888	142894088	+	654.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009377, intron 12 of 12)	intron (NM_009377, intron 12 of 12)	5978.0	NM_009377	21823.0	Mm.1292	NM_009377	ENSMUSG00000000214	Th	-	tyrosine hydroxylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-116006457-2	chr6	116006357	116006557	+	765.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	IMPB_01|Satellite|Satellite	-11452.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-103120477-4	chr4	103120313	103120513	+	908.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039081, intron 1 of 12)	intron (NM_001039081, intron 1 of 12)	1023.0	NM_001039081	71148.0	Mm.288721	NM_027696	ENSMUSG00000028522	Mier1	4933425I22Rik|5830411K19Rik|er1	MEIR1 treanscription regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-49553851-3	chr18	49553755	49553955	+	753.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30566.0	NR_033785	67321.0	Mm.245802	NR_033785	ENSMUSG00000100297	1700044K03Rik	-	RIKEN cDNA 1700044K03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-78487862-4	chr10	78487759	78487959	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22911.0	NM_172134	216134.0	Mm.206159	NM_172134	ENSMUSG00000032788	Pdxk	2310036D04Rik|AA119688|C77999	pyridoxal (pyridoxine, vitamin B6) kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141265031-4	chr7	141265015	141265215	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001252600, exon 4 of 9)	exon (NM_001252600, exon 4 of 9)	1309.0	NM_001252601	54123.0	Mm.3233	NM_016850	ENSMUSG00000025498	Irf7	-	interferon regulatory factor 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-86717675-3	chr11	86717575	86717775	+	802.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003908, intron 14 of 31)	intron (NM_001003908, intron 14 of 31)	33594.0	NM_001098810	217057.0	Mm.24868	NM_175004	ENSMUSG00000072582	Ptrh2	A230072I16Rik|Bit1|CGI-147	peptidyl-tRNA hydrolase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-15861490-1	chr3	15861390	15861590	+	640.0	f0_balb.idr	Intergenic	RLTR45|LTR|ERVK	-13003.0	NM_001173459	100038947.0	Mm.330924	NM_001173459	ENSMUSG00000074677	LOC100038947	-	signal-regulatory protein beta 1-like	protein-coding	0.240887160956816	-0.0827174975470005	-0.0867258991539337	0.182539527427657	-0.0941099251309621	0.0951162933527747	0.0757989355923188	0.298258658996818	0.242051745900997	0.907545568769305	1
Merged-chr6-83702495-2	chr6	83702395	83702595	+	855.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_075094, exon 2 of 3)	non-coding (NR_075094, exon 2 of 3)	8330.0	NR_075094	574519.0	Mm.487605	NR_002871	ENSMUSG00000085794	Vax2os	Vas2os|Vax2os1|Vax2os2	ventral anterior homeobox 2, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-132620762-3	chr7	132620700	132620900	+	863.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029609, intron 1 of 6)	intron (NM_029609, intron 1 of 6)	10157.0	NM_029609	76429.0	Mm.276721	NM_029609	ENSMUSG00000030946	Lhpp	2310007H09Rik	phospholysine phosphohistidine inorganic pyrophosphate phosphatase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-57929572-4	chr15	57929441	57929641	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356310, intron 3 of 19)	intron (NM_001356310, intron 3 of 19)	17342.0	NM_001356310	210544.0	Mm.390835	NM_199300	ENSMUSG00000022364	Tbc1d31	4B3|D330013L20Rik|Gm85|Wdr67	TBC1 domain family, member 31	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-101515259-2	chr14	101515159	101515359	+	808.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081278, intron 1 of 18)	B4A|SINE|B4	93932.0	NM_001081278	210789.0	Mm.320639	NM_173380	ENSMUSG00000033083	Tbc1d4	5930406J04Rik|A930035N22|AV295684|As160	TBC1 domain family, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-136975924-1	chr5	136975824	136976024	+	548.0	f1_c57bl6.idr	TTS (NM_021719)	TTS (NM_021719)	8055.0	NM_021719	60363.0	Mm.87202	NM_021719	ENSMUSG00000001739	Cldn15	2210009B08Rik|BB107105	claudin 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-97085439-2	chr7	97085339	97085539	+	598.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162477, intron 1 of 9)	intron (NM_001162477, intron 1 of 9)	3688.0	NM_010248	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	-0.738962788346138	-0.644011989448946	-0.988737389541972	-0.832880183165231	-0.993350665122075	-0.975094409937446	-0.986324231373255	-0.990320675190374	-2.72088724690256	0.347957687028499	1
Merged-chr1-92652155-3	chr1	92652088	92652288	+	805.988892	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3347.0	NM_153114	260301.0	Mm.219545	NM_153114	ENSMUSG00000044055	Otos	OTOSP	otospiralin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-19185590-2	chr10	19185491	19185691	+	726.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_038022, intron 1 of 1)	intron (NR_038022, intron 1 of 1)	18353.0	NR_038022	100504265.0	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	0.290274177283572	1.10926714771397	0.308618411466347	0.487952046875139	0.291995806277582	0.319373642870878	1.16196799074365	0.7842489587592	0.477059001996907	0.798203984865988	1
Merged-chr18-12922189-2	chr18	12922089	12922289	+	836.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_207530, intron 4 of 27)	intron (NM_207530, intron 4 of 27)	19652.0	NM_207530	64291.0	Mm.259470	NM_020573	ENSMUSG00000044252	Osbpl1a	G430090F17Rik|Gm753|ORP-1|Osbpl1b	oxysterol binding protein-like 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-20042079-4	chr4	20041973	20042173	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010281)	promoter-TSS (NM_010281)	21.0	NM_010281	14590.0	Mm.20461	NM_010281	ENSMUSG00000073987	Ggh	gamma-GH	gamma-glutamyl hydrolase	protein-coding	4.460059549434	4.19610138329729	5.30217958189731	5.0920174535421	4.17892863514766	3.80368945575724	5.12629002445652	4.02898657532304	-0.558644170574327	0.200273855037433	0.684098226753363
Merged-chr13-75843353-2	chr13	75843253	75843453	+	669.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_053108, intron 1 of 2)	L2|LINE|L2	3467.0	NM_053108	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-80357203-3	chr2	80357055	80357255	+	821.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34209.0	NR_040370	100503167.0	Mm.265892	NR_040370		Gm13752	-	predicted gene 13752	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83043541-4	chr6	83043442	83043642	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013586, intron 4 of 13)	intron (NM_013586, intron 4 of 13)	-6169.0	NR_106007	102465630.0		NR_106007	ENSMUSG00000099035	Mir7040	Gm27489|mmu-mir-7040	microRNA 7040	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-104220437-2	chr8	104220337	104220537	+	650.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28121.0	NR_045642	57813.0	Mm.183110	NM_021028	ENSMUSG00000035824	Tk2	AU024611|mt-TK	thymidine kinase 2, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-26723318-3	chr8	26723218	26723418	+	745.466675	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	101105.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	0.435266187500739	0.304369598916356	0.644664591915529	0.858008648115138	0.44007767335536	0.306122601058858	0.298288085170747	1.22272858600271	0.359968842735855	0.839991234927382	1
Merged-chr2-43795019-4	chr2	43794926	43795126	+	801.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301831, intron 2 of 14)	intron (NM_001301831, intron 2 of 14)	46202.0	NM_001301831	76117.0	Mm.217350	NM_153820	ENSMUSG00000049744	Arhgap15	5830480G12Rik	Rho GTPase activating protein 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-92098893-3	chr5	92098790	92098990	+	695.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359197, intron 1 of 10)	intron (NM_001359197, intron 1 of 10)	-15146.0	NM_001080795	23881.0	Mm.290530	NM_011816	ENSMUSG00000029405	G3bp2	AA409541|E430034L04Rik|G3BP|mKIAA0660	GTPase activating protein (SH3 domain) binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-145767186-3	chr6	145767107	145767307	+	945.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41176.0	NM_027760	71323.0	Mm.158669	NM_027760	ENSMUSG00000030259	Rassf8	5133400D11Rik|AA815821|AW123240|Hoj1|mHoj-1	Ras association (RalGDS/AF-6) domain family (N-terminal) member 8	protein-coding	1.77658428647889	2.86482813399008	2.22991896437259	2.60788722174516	2.49788079110662	2.32095052359653	2.24667259932367	2.52637730350075	-0.0661610044970238	0.935450549614277	0.998431161219273
Merged-chr12-80922131-4	chr12	80922035	80922235	+	913.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC-int|LTR|ERVL-MaLR	2312.0	NR_033786	67340.0	Mm.386790	NR_033786	ENSMUSG00000101912	1700052I22Rik	-	RIKEN cDNA 1700052I22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-133039656-3	chr1	133039544	133039744	+	818.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6368.0	NM_001099276	240752.0	Mm.387308	NM_001099276	ENSMUSG00000026447	Pik3c2b	C330011J12Rik|Gm199|PI3K-C2beta|PI3KC2beta	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta	protein-coding	1.73550883581115	2.39152285856646	2.01496590660546	0.981475755923185	1.7514941192942	2.22067177340026	1.00621195633109	0.984895273678239	-0.73676995764504	0.557422783579602	0.960321604678676
Merged-chr8-116975223-4	chr8	116975142	116975342	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027103, intron 1 of 2)	intron (NM_027103, intron 1 of 2)	3411.0	NM_001357254	69528.0	Mm.272846	NM_027103	ENSMUSG00000031847	1700030J22Rik	-	RIKEN cDNA 1700030J22 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16739708-3	chr7	16739606	16739806	+	869.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198613, intron 1 of 4)	intron (NM_198613, intron 1 of 4)	1262.0	NM_198613	232910.0	Mm.333597	NM_198613	ENSMUSG00000008036	Ap2s1	AI043088	adaptor-related protein complex 2, sigma 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-93664097-2	chr8	93663997	93664197	+	733.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55878.0	NR_154559	108167546.0	Mm.403939	NR_154559		Gm30606	-	predicted gene, 30606	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-69575487-4	chr18	69575365	69575565	+	950.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 8 of 19)	intron (NM_001361128, intron 8 of 19)	229305.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-63067773-2	chr14	63067673	63067873	+	601.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12700.0	NR_046019	72609.0	Mm.387101	NR_046019		2700070H01Rik	-	RIKEN cDNA 2700070H01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115483189-2	chr5	115483089	115483289	+	753.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_133760, intron 1 of 4)	intron (NM_133760, intron 1 of 4)	1108.0	NM_001167691	75387.0	Mm.332616	NM_133760	ENSMUSG00000029524	Sirt4	4930596O17Rik	sirtuin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-129388368-4	chr6	129388253	129388453	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2479.0	NM_001204223	71183.0	Mm.79402	NM_027709	ENSMUSG00000030158	Clec12b	4933425B16Rik	C-type lectin domain family 12, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-120121191-4	chr1	120121121	120121321	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001172074)	promoter-TSS (NM_001172074)	34.0	NM_001172074	73103.0	Mm.271602	NM_028439	ENSMUSG00000026388	3110009E18Rik	-	RIKEN cDNA 3110009E18 gene	protein-coding	6.12439863084672	5.79529703818261	5.91967275525697	5.5982254574726	5.65956064509166	6.03131109266122	6.43072226153496	6.02775649341741	0.201579360587829	0.422341405985929	0.900322118218157
Merged-chr15-77359676-3	chr15	77359568	77359768	+	790.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39442.0	NM_029419	75761.0	Mm.232636	NM_029419	ENSMUSG00000010601	Apol7a	9130022K13Rik|Apol3	apolipoprotein L 7a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-33003757-4	chr5	33003632	33003832	+	827.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15084.0	NM_011738	22629.0	Mm.332314	NM_011738	ENSMUSG00000018965	Ywhah	-	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide	protein-coding	0.161368934805043	0.727805653897287	0.17780670314503	0.171667391009591	0.469017718930005	0.187464571540861	0.381523443030373	1.20887860122465	1.76286284852634	0.364833650745266	1
Merged-chr2-11548743-4	chr2	11548637	11548837	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177758, intron 1 of 14)	intron (NM_001177758, intron 1 of 14)	5192.0	NM_001177758	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-144204052-2	chr3	144203952	144204152	+	781.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_010723, intron 1 of 4)	intron (NM_010723, intron 1 of 4)	1203.0	NM_010723	16911.0	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107674810-2	chr9	107674710	107674910	+	663.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008140, exon 9 of 9)	3' UTR (NM_008140, exon 9 of 9)	4782.0	NM_008140	14685.0	Mm.284853	NM_008140	ENSMUSG00000034837	Gnat1	Gnat-1|Ird1|Ird2|Tralpha|irdc|irdr|transducin	guanine nucleotide binding protein, alpha transducing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-181242041-4	chr2	181241937	181242137	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183162)	promoter-TSS (NM_183162)	-10.0	NM_183162	229003.0	Mm.315872	NM_183162	ENSMUSG00000027580	Helz2	PDIP1|Pric285|mKIAA1769|mPDIP1	helicase with zinc finger 2, transcriptional coactivator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-120111050-4	chr2	120110958	120111158	+	908.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133838, intron 3 of 5)	MIR|SINE|MIR	43517.0	NM_133838	98878.0	Mm.132226	NM_133838	ENSMUSG00000027293	Ehd4	2210022F10Rik|AI197390|AI846352|AV006278|Past2	EH-domain containing 4	protein-coding	2.38753105129934	1.8342910324965	2.9762097252214	2.72071884415636	2.16676258190895	3.010952586466	2.71848628123198	2.82515255497545	0.322758487698051	0.676744262598193	0.99440487726309
Merged-chr1-120070265-2	chr1	120070165	120070365	+	759.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019432, intron 1 of 1)	intron (NM_019432, intron 1 of 1)	3515.0	NM_019432	170706.0	Mm.24750	NM_019432	ENSMUSG00000050777	Tmem37	AI173373|AW540203|Pr|Pr1	transmembrane protein 37	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-4973526-4	chr6	4973429	4973629	+	780.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181595, intron 2 of 15)	intron (NM_181595, intron 2 of 15)	70209.0	NM_181595	243725.0	Mm.332901	NM_181595	ENSMUSG00000032827	Ppp1r9a	2810430P21Rik|4930518N04Rik|5330407E15|A230094E16Rik|BB181831|NRB|mKIAA1222|neurabin-I	protein phosphatase 1, regulatory (inhibitor) subunit 9A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-86243497-2	chr12	86243397	86243597	+	689.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027405, intron 1 of 9)	intron (NM_027405, intron 1 of 9)	1639.0	NM_001324488	70373.0	Mm.252967	NM_027405	ENSMUSG00000021254	Gpatch2l	1700020O03Rik|4732487G21Rik|A630090I05Rik|Kiaa1152	G patch domain containing 2 like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-78679624-2	chr17	78679527	78679727	+	774.25	f0_balb.idr|f1_balb.idr	intron (NM_011500, intron 6 of 17)	Lx10|LINE|L1	56933.0	NM_011500	268980.0	Mm.311915	NM_011500	ENSMUSG00000024077	Strn	AU022939|D130055P19	striatin, calmodulin binding protein	protein-coding	1.47599609154193	1.36649023896461	2.44712474260158	1.95391234831964	2.37155277231114	3.34367033709926	2.58279145668767	2.93626637684747	2.11725798123078	0.0165773332926206	0.155629769049188
Merged-chr7-89236300-4	chr7	89236199	89236399	+	919.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360746, intron 5 of 14)	intron (NM_001360746, intron 5 of 14)	102488.0	NM_028343	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-126987433-4	chr10	126987337	126987537	+	987.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113470, intron 1 of 7)	intron (NM_001113470, intron 1 of 7)	-8093.0	NR_029803	723962.0		NR_029803	ENSMUSG00000065430	Mir26a-2	Mirn26a-2|mir-26a-2	microRNA 26a-2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-6527913-2	chr11	6527813	6528013	+	790.666626	f1_balb.idr|f1_c57bl6.idr	intron (NR_045893, intron 2 of 3)	intron (NR_045893, intron 2 of 3)	847.0	NR_045893	100041286.0	Mm.459507	NR_045893	ENSMUSG00000085156	Snhg15	Gm11974	small nucleolar RNA host gene 15	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-55155221-4	chr11	55155124	55155324	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3518.0	NM_172258	215332.0	Mm.87054	NM_172258	ENSMUSG00000049491	Slc36a3	PAT3|TRAMD2|tramdorin2	solute carrier family 36 (proton/amino acid symporter), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-30544581-1	chr13	30544481	30544681	+	630.0	f0_balb.idr	intron (NM_025710, intron 1 of 1)	intron (NM_025710, intron 1 of 1)	735.0	NM_025710	66694.0	Mm.181933	NM_025710	ENSMUSG00000038462	Uqcrfs1	4430402G14Rik|AI875505	ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-68012865-4	chr5	68012768	68012968	+	816.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18967.0	NM_001018019	433899.0	Mm.332422	NM_001018019	ENSMUSG00000068082	Grxcr1	Tg(Eno2-Gabrb3)0370Brll|pi|tde	glutaredoxin, cysteine rich 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30447423-4	chr2	30447331	30447531	+	844.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_138748, exon 10 of 10)	3' UTR (NM_138748, exon 10 of 10)	26768.0	NM_030244	72500.0	Mm.295464	NM_030244	ENSMUSG00000089762	Ier5l	2610524G09Rik	immediate early response 5-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166627716-4	chr2	166627591	166627791	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 5 of 39)	intron (NM_177782, intron 5 of 39)	63169.0	NR_152154	433503.0	Mm.491336	NR_152154		Gm29679	-	predicted gene, 29679	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-88332167-2	chr4	88332029	88332229	+	789.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081184, intron 23 of 43)	B3|SINE|B2	106797.0	NM_025760	66775.0	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	1.25741591491793	1.26346286021221	1.35961363175778	1.3218980063779	1.46539308168943	1.27212974557014	0.88354615164166	1.44242732520391	-0.0309978603732641	0.980219565832223	0.998431161219273
Merged-chr19-29334608-2	chr19	29334508	29334708	+	574.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011272)	promoter-TSS (NM_011272)	62.0	NM_011272	19773.0	Mm.5033	NM_011272	ENSMUSG00000039097	Rln1	Rln|rlx	relaxin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-49450680-2	chr7	49450580	49450780	+	634.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175272, intron 6 of 37)	intron (NM_175272, intron 6 of 37)	186155.0	NM_001005232	13172.0	Mm.307176	NM_001005232	ENSMUSG00000030507	Dbx1	AI426026|Dbx	developing brain homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167687704-6	chr2	167687576	167687776	+	862.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-1239.0	NM_009883	12608.0	Mm.439656	NM_009883	ENSMUSG00000056501	Cebpb	C/EBPbeta|CRP2|IL-6DBP|LAP|LIP|NF-IL6|NF-M|Nfil6	CCAAT/enhancer binding protein (C/EBP), beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-98792543-4	chr10	98792431	98792631	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-122111.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98809695-4	chr11	98809588	98809788	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138660)	promoter-TSS (NM_138660)	-120.0	NM_138660	192160.0	Mm.40120	NM_138660	ENSMUSG00000078676	Casc3	Btz|Mln51	cancer susceptibility candidate 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-105616291-4	chr5	105616120	105616320	+	934.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	-83749.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	1.7304687144959	1.06297560362649	3.26426617818539	0.999783378988275	1.74755070833886	1.07058128950091	2.41947671009028	2.33497573979162	-0.352794255261622	0.768448054016124	0.998431161219273
Merged-chr19-17342493-2	chr19	17342394	17342594	+	596.0	f0_balb.idr|f0_c57.idr	intron (NM_010265, intron 1 of 2)	MIRb|SINE|MIR	-2989.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	1.37955516389711	2.97971378945397	3.57881729393118	2.52420877055786	3.66350207348748	3.79478237327022	1.83716468782468	3.84028573539591	1.03317600056895	0.200139196133418	0.683862751625805
Merged-chr7-27285165-2	chr7	27285065	27285265	+	876.2000119999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26404.0	NM_010950	18223.0	Mm.458153	NM_010950	ENSMUSG00000063160	Numbl	nbl	numb-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101266802-4	chr15	101266676	101266876	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010444)	promoter-TSS (NM_010444)	-70.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-84720988-2	chr16	84720888	84721088	+	588.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_017404, intron 8 of 9)	intron (NM_017404, intron 8 of 9)	6848.0	NR_029565	387173.0		NR_029565	ENSMUSG00000065397	Mir155	Mirn155|mir-155|mmu-mir-155	microRNA 155	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-55037853-6	chr6	55037655	55037855	+	893.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_180678)	promoter-TSS (NM_180678)	-246.0	NM_180678	353172.0	Mm.250004	NM_180678	ENSMUSG00000029777	Gars	GENA202|Gena201|Nmf249|Sgrp23	glycyl-tRNA synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-32767052-4	chr12	32766950	32767150	+	920.94165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53285.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116845092-1	chr11	116844992	116845192	+	925.0	f1_c57bl6.idr	intron (NM_028865, intron 1 of 4)	B1_Mm|SINE|Alu	1577.0	NM_028865	74319.0	Mm.429312	NM_028865	ENSMUSG00000090266	Mettl23	1110005A03Rik|1500035B17Rik|4933424L15Rik	methyltransferase like 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-83274371-4	chr4	83274276	83274476	+	920.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027238, intron 2 of 19)	intron (NM_027238, intron 2 of 19)	49813.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-92368269-8	chr5	92368136	92368336	+	928.8035890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310664, intron 2 of 10)	MTD|LTR|ERVL-MaLR	-4940.0	NR_038116	56066.0	Mm.131723	NM_019494	ENSMUSG00000060183	Cxcl11	Cxc11|H174|I-tac|Ip9|Itac|Scyb11|Scyb9b|b-R1|betaR1	chemokine (C-X-C motif) ligand 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19523981-2	chr7	19523881	19524081	+	842.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_027116, exon 4 of 4)	exon (NM_027116, exon 4 of 4)	5250.0	NM_027116	69547.0	Mm.77325	NM_027116	ENSMUSG00000060621	Nkpd1	2310015G09Rik	NTPase, KAP family P-loop domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-78725420-3	chr14	78725385	78725585	+	932.609558	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081336, intron 1 of 29)	intron (NM_001081336, intron 1 of 29)	7244.0	NM_001081336	380921.0	Mm.89591	NM_001081336	ENSMUSG00000034731	Dgkh	5930402B05Rik|D130015C16|DGK	diacylglycerol kinase, eta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171287531-2	chr1	171287431	171287631	+	925.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013919, intron 1 of 12)	intron (NM_013919, intron 1 of 12)	430.0	NM_013919	30941.0	Mm.27510	NM_013919	ENSMUSG00000053483	Usp21	ESTM28|Usp16|Usp23|W53272	ubiquitin specific peptidase 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-134917209-4	chr4	134917109	134917309	+	946.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER5|LTR|ERV1	-2293.0	NM_027935	71817.0	Mm.88349	NM_027935	ENSMUSG00000028822	Tmem50a	3200001F09Rik|CAM|Smp1	transmembrane protein 50A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167805932-7	chr2	167805825	167806025	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	114748.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-80916669-3	chr8	80916554	80916754	+	998.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-36135.0	NM_001301298	14388.0	Mm.277409	NM_021356	ENSMUSG00000031714	Gab1	AA408973|AW107238	growth factor receptor bound protein 2-associated protein 1	protein-coding	2.71708282094413	1.92569931618211	3.51374860925136	2.21347703036956	3.14632952077613	2.96807237190983	3.66159424838727	2.88278104578751	0.787936188866867	0.275827224698942	0.77982362793126
Merged-chr6-86583075-2	chr6	86582975	86583175	+	913.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45099.0	NM_026414	67855.0	Mm.183043	NM_026414	ENSMUSG00000033508	Asprv1	2300003P22Rik|AA986851|SASP|SASPase|Taps	aspartic peptidase, retroviral-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-79447508-4	chr8	79447391	79447591	+	976.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48023.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-23920076-3	chr5	23919959	23920159	+	856.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310471, intron 10 of 10)	RMER10A|LTR|ERVL	67826.0	NR_028536	100217436.0		NR_028536		Snord93	Gm22397|MBII-336	small nucleolar RNA, C/D box 93	snoRNA	1.43189134677769	2.17368306693077	1.28401591479174	1.23358410314625	3.2578383541776	3.18329328066697	3.60613393629266	4.37023473742628	4.33361258287112	3.15304154362791e-06	0.000172478081035476
Merged-chr3-131275097-2	chr3	131274997	131275197	+	714.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-2996.0	NM_008212	15107.0	Mm.260164	NM_008212	ENSMUSG00000027984	Hadh	AA409008|AU019341|AW742602|HCDH|Hadhsc|Schad	hydroxyacyl-Coenzyme A dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36281042-4	chr18	36280937	36281137	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008989)	promoter-TSS (NM_008989)	-125.0	NM_008989	19290.0	Mm.231802	NM_008989	ENSMUSG00000043991	Pura	CAGER-1|Pur-alpha|ssCRE-BP	purine rich element binding protein A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-3289265-4	chr7	3289169	3289369	+	920.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001093764, exon 1 of 3)	5' UTR (NM_001093764, exon 1 of 3)	231.0	NM_001093764	50918.0	Mm.29874	NM_016969	ENSMUSG00000068566	Myadm	D7Wsu62e	myeloid-associated differentiation marker	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-119980067-4	chr4	119979896	119980096	+	946.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010657, intron 1 of 8)	(TG)n|Simple_repeat|Simple_repeat	165318.0	NM_010657	16656.0	Mm.302758	NM_010657	ENSMUSG00000028634	Hivep3	2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3	human immunodeficiency virus type I enhancer binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-61556904-4	chr14	61556813	61557013	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025697)	promoter-TSS (NM_025697)	-27.0	NM_001310603	66674.0	Mm.282706	NM_025697	ENSMUSG00000021930	Spryd7	6330409N04Rik|Clld6	SPRY domain containing 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-20961611-4	chr18	20961534	20961734	+	913.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026301, intron 1 of 5)	CpG	17009.0	NM_026301	67664.0	Mm.45980	NM_026301	ENSMUSG00000033107	Rnf125	4930553F04Rik	ring finger protein 125	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-12815391-4	chr19	12815231	12815431	+	890.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134152, intron 3 of 8)	Lx2B|LINE|L1	16752.0	NM_134152	107321.0	Mm.313136	NM_134152	ENSMUSG00000024696	Lpxn	4933402K05Rik|A530083L21Rik|AV278559|LDPL	leupaxin	protein-coding	-1.39239040096365	-1.50706362993767	-1.51637061241093	-1.52401564492204	-1.25712099376264	-1.5050467680107	-1.51426371558223	-1.52264718775774	0.640753741356348	0.855918148133186	1
Merged-chr1-183346444-2	chr1	183346344	183346544	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177389, intron 6 of 26)	intron (NM_177389, intron 6 of 26)	23121.0	NM_177389	338366.0	Mm.41152	NM_177389		Mia3	9130229H14Rik|A930039G15Rik|AU022327|B230399H06Rik|C80126|Gm1525|TANGO1|Tango	melanoma inhibitory activity 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-39169543-2	chr18	39169443	39169643	+	630.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361073, intron 11 of 21)	intron (NM_001361073, intron 11 of 21)	176398.0	NM_175164	71302.0	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding	-1.56355737717652	-1.81244775989375	-1.82128546162293	-1.82854501295842	-1.83962066705452	-1.81053259306168	-1.81928479966835	-1.82724555674025	-1.28500227969968	0.715751224811686	1
Merged-chr7-13010626-2	chr7	13010526	13010726	+	991.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024699)	promoter-TSS (NM_001024699)	-774.0	NM_001360833	232879.0	Mm.279272	NM_001024699	ENSMUSG00000049600	Zbtb45	BB161562|Gm157|Zfp499	zinc finger and BTB domain containing 45	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-125271712-4	chr5	125271619	125271819	+	889.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	69375.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-35673794-2	chr5	35673694	35673894	+	646.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001042615, intron 1 of 6)	intron (NM_001042615, intron 1 of 6)	5986.0	NM_001042615	78558.0	Mm.274255	NM_030127	ENSMUSG00000029096	Htra3	2210021K23Rik|9530081K03Rik|Prsp|Tasp	HtrA serine peptidase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-117761306-3	chr14	117761187	117761387	+	702.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011821, intron 4 of 8)	X1_LINE|LINE|CR1	192560.0	NR_105747	102465148.0		NR_105747	ENSMUSG00000098648	Mir6239	Gm28025|mmu-mir-6239	microRNA 6239	ncRNA	1.5553766944938	1.61416444595585	0.898406033084761	1.17047411568094	1.11332940883514	0.710868996708176	0.904731709125352	0.688448566774996	-2.22438669618685	0.125963642417823	0.555837940211303
Merged-chr19-28964403-2	chr19	28964323	28964523	+	772.5	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_198651)	promoter-TSS (NM_198651)	-269.0	NM_198651	381218.0	Mm.280653	NM_198651	ENSMUSG00000064202	4430402I18Rik	AW122618|Spata6l	RIKEN cDNA 4430402I18 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-19371967-4	chr2	19371812	19372012	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029619, intron 1 of 4)	CpG	276.0	NM_029619	76467.0	Mm.27166	NM_029619	ENSMUSG00000023094	Msrb2	2310050L06Rik|Mrsb|Msrb|Pilb	methionine sulfoxide reductase B2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-75219403-1	chr3	75219303	75219503	+	556.0	f0_c57.idr	Intergenic	Intergenic	50675.0	NM_026460	67931.0	Mm.259446	NM_026460	ENSMUSG00000034139	Serpini2	Spi14	serine (or cysteine) peptidase inhibitor, clade I, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25711059-6	chr7	25710997	25711197	+	734.444458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_028771)	TTS (NM_028771)	7956.0	NM_028771	52132.0	Mm.278798	NM_028771	ENSMUSG00000002608	Ccdc97	1200014H14Rik|2810446P04Rik|AA545218|D7Ertd462e	coiled-coil domain containing 97	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-144721224-2	chr3	144721124	144721324	+	871.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001282042)	promoter-TSS (NM_001282042)	-889.0	NM_001282037	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-11267595-2	chr12	11267495	11267695	+	681.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361252, intron 1 of 9)	intron (NM_001361252, intron 1 of 9)	1709.0	NM_025695	67241.0	Mm.173953	NM_025695	ENSMUSG00000020608	Smc6	2810489L22Rik|3830418C19Rik|AA990493|AU018782|AW742439|SMC-6|Smc6l1|mKIAA4103	structural maintenance of chromosomes 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70512485-4	chr8	70512398	70512598	+	935.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_029366)	TTS (NM_029366)	2012.0	NR_151735	78183.0	Mm.297372	NR_151735		4930522P08Rik	-	RIKEN cDNA 4930522P08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-112369958-2	chr2	112369858	112370058	+	598.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4A|LINE|L1	-1931.0	NM_026519	68032.0	Mm.220942	NM_026519	ENSMUSG00000027131	Emc4	2610318K02Rik|Tmem85	ER membrane protein complex subunit 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-131557153-2	chr7	131557053	131557253	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_145998)	TTS (NM_145998)	3091.0	NM_145998	15372.0	Mm.303357	NM_145998	ENSMUSG00000050100	Hmx2	Nkx-5.2|Nkx5-2	H6 homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-74251844-4	chr4	74251744	74251944	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144787)	promoter-TSS (NM_144787)	-35.0	NM_144787	76804.0	Mm.209059	NM_144787	ENSMUSG00000028397	Kdm4c	2410141F18Rik|AA517467|Gasc1|Jmjd2c	lysine (K)-specific demethylase 4C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-59160193-4	chr2	59160070	59160270	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026361)	promoter-TSS (NM_026361)	513.0	NM_001362393	227933.0	Mm.330234	NM_177650	ENSMUSG00000036641	Ccdc148	5830402J09|Gm38473	coiled-coil domain containing 148	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-9977137-2	chr19	9977037	9977237	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3463.0	NR_073181	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-121355390-4	chr2	121355241	121355441	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2435.0	NM_001355069	12716.0	Mm.252145	NM_009897	ENSMUSG00000000308	Ckmt1	Mt-CK|ScCKmit|U-MtCK|UbCKmit|mi-CK|mia-CK	creatine kinase, mitochondrial 1, ubiquitous	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100927547-3	chr11	100927459	100927659	+	884.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_213660, intron 1 of 23)	intron (NM_213660, intron 1 of 23)	11981.0	NM_213660	20848.0	Mm.249934	NM_011486	ENSMUSG00000004040	Stat3	1110034C02Rik|AW109958|Aprf	signal transducer and activator of transcription 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-12347531-1	chr18	12347431	12347631	+	611.0	f0_balb.idr	intron (NM_010680, intron 1 of 74)	intron (NM_010680, intron 1 of 74)	13507.0	NM_010680	16774.0	Mm.42012	NM_010680	ENSMUSG00000024421	Lama3	Lama3B|[a]3B	laminin, alpha 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-63122768-4	chr10	63122680	63122880	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_182992, intron 16 of 19)	intron (NM_182992, intron 16 of 19)	22624.0	NM_016864	53404.0	Mm.228661	NM_016864	ENSMUSG00000036816	Atoh7	Math5|bHLHa13	atonal bHLH transcription factor 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129741394-4	chr4	129741307	129741507	+	965.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011317, intron 1 of 8)	CpG	896.0	NM_011317	20218.0	Mm.8256	NM_011317	ENSMUSG00000028790	Khdrbs1	Sam68|p62|p68	KH domain containing, RNA binding, signal transduction associated 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3860164-2	chr19	3860064	3860264	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271496, intron 1 of 11)	B4A|SINE|B4	8391.0	NR_073190	12660.0	Mm.225505	NM_013490	ENSMUSG00000024843	Chka	CK|CK/EK-alpha|Chetk-alpha|Chk|ChoK|EK|EtnK-alpha	choline kinase alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-73249900-1	chr6	73249800	73250000	+	792.0	f1_balb.idr	intron (NM_019879, intron 1 of 8)	intron (NM_019879, intron 1 of 8)	1395.0	NM_019879	56451.0	Mm.29845	NM_019879	ENSMUSG00000052738	Suclg1	1500000I01Rik|Sucla1	succinate-CoA ligase, GDP-forming, alpha subunit	protein-coding	1.65094438000674	2.19345845084763	1.68237849925377	0.935173153542478	2.02211908715168	1.76187274008092	0.955901976713081	0.938028801940103	-0.509218164528203	0.697169675807175	0.997929106458421
Merged-chr6-131272515-4	chr6	131272410	131272610	+	980.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20734.0	NM_001327860	66441.0	Mm.46623	NM_025564	ENSMUSG00000030188	Magohb	2010012C16Rik|Mago|Magoh|Magoh-rs1	mago homolog B, exon junction complex core component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-92374883-4	chr5	92374778	92374978	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310664, intron 2 of 10)	intron (NM_001310664, intron 2 of 10)	-11582.0	NR_038116	56066.0	Mm.131723	NM_019494	ENSMUSG00000060183	Cxcl11	Cxc11|H174|I-tac|Ip9|Itac|Scyb11|Scyb9b|b-R1|betaR1	chemokine (C-X-C motif) ligand 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-65414501-4	chr14	65414386	65414586	+	900.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010932, intron 1 of 3)	Lx4A|LINE|L1	10986.0	NM_001205075	18155.0	Mm.16347	NM_010932	ENSMUSG00000045731	Pnoc	N/OFQ|Npnc1|OFQ/N	prepronociceptin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-105968214-3	chr12	105968112	105968312	+	887.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42051.0	NM_011705	22367.0	Mm.2981	NM_011705	ENSMUSG00000021115	Vrk1	51PK	vaccinia related kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70174236-2	chr14	70174136	70174336	+	752.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145978, intron 3 of 9)	intron (NM_145978, intron 3 of 9)	2579.0	NM_001253736	213019.0	Mm.283968	NM_145978	ENSMUSG00000022090	Pdlim2	4732462F18Rik|Slim	PDZ and LIM domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-118543448-2	chr2	118543348	118543548	+	769.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001331221, intron 3 of 3)	intron (NM_001331221, intron 3 of 3)	1139.0	NR_138603	171543.0	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-114929632-2	chr6	114929532	114929732	+	897.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356371, intron 2 of 5)	intron (NM_001356371, intron 2 of 5)	-7811.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-32376590-2	chr4	32376490	32376690	+	554.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40845.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-50805027-4	chr1	50804985	50805185	+	833.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-122438.0	NM_019790	56363.0	Mm.245154	NM_019790	ENSMUSG00000026109	Tmeff2	4832418D20Rik|7630402F16Rik|TR-2	transmembrane protein with EGF-like and two follistatin-like domains 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-83689101-4	chr12	83689007	83689207	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008943, intron 1 of 11)	intron (NM_008943, intron 1 of 11)	544.0	NM_008943	19164.0	Mm.998	NM_008943	ENSMUSG00000019969	Psen1	Ad3h|PS-1|PS1|S182	presenilin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-3100456-1	chr11	3100356	3100556	+	579.0	f1_balb.idr	Intergenic	GSAT_MM|Satellite|Satellite	-23565.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-8029041-4	chr10	8028952	8029152	+	968.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	-72929.0	NM_138667	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-57027263-3	chr4	57027166	57027366	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355492, intron 19 of 24)	intron (NM_001355492, intron 19 of 24)	-36875.0	NM_001142965	230235.0	Mm.207654	NM_001142965	ENSMUSG00000045589	Frrs1l	6430704M03Rik	ferric-chelate reductase 1 like	protein-coding	3.95934062701475	4.16722808762602	3.95503877508123	3.98266418452199	5.13050819321116	5.2377975080522	4.42996620619674	4.18996014791642	1.02885614771135	0.0124572623056521	0.127093735665999
Merged-chr5-127616938-2	chr5	127616838	127617038	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_133895, exon 1 of 8)	exon (NM_133895, exon 1 of 8)	454.0	NM_133895	100561.0	Mm.28506	NM_133895	ENSMUSG00000029416	Slc15a4	AA987064|AW742963|C130069N12Rik|PHT1|PTR4	solute carrier family 15, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-52232748-3	chr10	52232666	52232866	+	912.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347444)	promoter-TSS (NM_001347444)	-853.0	NM_001347444	66686.0	Mm.62982	NM_025705	ENSMUSG00000019891	Dcbld1	4631413K11Rik	discoidin, CUB and LCCL domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-61640794-4	chr18	61640696	61640896	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045420, intron 1 of 2)	L3|LINE|CR1	1143.0	NR_045420	545261.0	Mm.426593	NR_045420	ENSMUSG00000098098	Bvht	Braveheart|Gm20748	braveheart long non-coding RNA	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85112598-2	chr12	85112498	85112698	+	723.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_030225, intron 2 of 14)	B1F2|SINE|Alu	1765.0	NM_030225	78920.0	Mm.296221	NM_030225	ENSMUSG00000004789	Dlst	1600017E01Rik|4632413C10Rik|4930529O08Rik|DLTS	dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-35054271-2	chr7	35054171	35054371	+	771.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009884, intron 1 of 1)	intron (NM_009884, intron 1 of 1)	2295.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-11561292-2	chr8	11561192	11561392	+	795.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001302459, intron 1 of 1)	intron (NM_001302459, intron 1 of 1)	2882.0	NM_001302459	26356.0	Mm.25709	NM_011919	ENSMUSG00000045969	Ing1	2610028J21Rik|AA407184|AI875420|mING1h|p33Ing1|p37Ing1b	inhibitor of growth family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44856726-4	chr7	44856601	44856801	+	869.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021549)	promoter-TSS (NM_021549)	-445.0	NM_021549	59047.0	Mm.238254	NM_021549	ENSMUSG00000002963	Pnkp	1810009G08Rik|PNK	polynucleotide kinase 3'- phosphatase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-37100407-2	chr15	37100292	37100492	+	682.083374	f0_balb.idr|f0_c57.idr	Intergenic	MLTR11B|LTR|ERVK	-92990.0	NM_026521	68036.0	Mm.371631	NM_026521	ENSMUSG00000062397	Zfp706	3110006P09Rik|AA793007|AW536850|C77232|Znf706	zinc finger protein 706	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-82715806-4	chr6	82715701	82715901	+	851.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58653.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-109264711-1	chr3	109264611	109264811	+	823.0	f0_balb.idr	Intergenic	Intergenic	-75972.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	0.221034533397466	-0.0199879588643002	0.523278541401985	-0.0286679767366469	-0.0339919942695863	0.170748826191622	-0.0238115827207495	0.491677602492553	-0.188341560003119	0.93011369308138	1
Merged-chr8-70783367-2	chr8	70783260	70783460	+	651.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_199308, intron 19 of 25)	intron (NM_199308, intron 19 of 25)	6498.0	NR_029440	72093.0	Mm.271208	NR_029440		2010320M18Rik	-	RIKEN cDNA 2010320M18 gene	ncRNA	-1.32440223303897	-1.29339468673833	-0.717877708899544	-1.31276353204239	-1.32392690786997	-1.29109028300231	-1.30162128075409	-1.31119997543009	-2.49510383040271	0.470258445164311	1
Merged-chr19-6873963-2	chr19	6873863	6874063	+	550.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15752.0	NM_001081291	78317.0	Mm.329596	NM_198008	ENSMUSG00000047810	Ccdc88b	2610041P08Rik|Ccdc88	coiled-coil domain containing 88B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-97520641-1	chr15	97520541	97520741	+	843.0	f0_balb.idr	Intergenic	ORR1E-int|LTR|ERVL-MaLR	185181.0	NM_028003	71919.0	Mm.12255	NM_028003	ENSMUSG00000022466	Rpap3	2310042P20Rik|D15Ertd682e	RNA polymerase II associated protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-112130425-4	chr13	112130294	112130494	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER30|DNA|hAT-Charlie	-158057.0	NM_001168403	77318.0	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171260624-2	chr1	171260536	171260736	+	798.5	f0_c57.idr|f1_c57bl6.idr	3' UTR (NM_172845, exon 9 of 9)	3' UTR (NM_172845, exon 9 of 9)	-9692.0	NM_020579	57370.0	Mm.274011	NM_020579	ENSMUSG00000052423	B4galt3	9530061M23Rik|AA104562|AW125175|ESTM26|ESTM6|R74981	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 3	protein-coding	2.27693561364126	2.46430527090991	3.268569716179	3.05889709972868	2.5742355551435	1.26554673802094	1.22471459774764	1.18788478837356	-2.35008611357582	0.0217199763218253	0.189386828422428
Merged-chr7-127254265-4	chr7	127254153	127254353	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177362, exon 3 of 3)	exon (NM_177362, exon 3 of 3)	6414.0	NM_023203	66422.0	Mm.29898	NM_023203	ENSMUSG00000042462	Dctpp1	2410015N17Rik|AI854235|RS21-C6	dCTP pyrophosphatase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-76346269-4	chr10	76346161	76346361	+	913.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081419)	promoter-TSS (NM_001081419)	-970.0	NM_001081419	64451.0	Mm.33183	NM_001081419	ENSMUSG00000020231	Dip2a	4931420H10Rik|AI426328|Dip2|Kiaa0184-hp|mKIAA0184	disco interacting protein 2 homolog A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-45371831-4	chr13	45371724	45371924	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17918.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	4.67367214607963	4.54710819962624	4.70270173278751	5.17857390382065	4.52225568704698	4.0209357845835	5.12272302106235	4.60292782585355	-0.215040467307161	0.56842232421447	0.962718661854691
Merged-chr7-28368989-2	chr7	28368889	28369089	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_138752, intron 4 of 18)	intron (NM_138752, intron 4 of 18)	3673.0	NM_138752	101497.0	Mm.235700	NM_138752	ENSMUSG00000037552	Plekhg2	AI194308|Clg|Cslg	pleckstrin homology domain containing, family G (with RhoGef domain) member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-143069990-2	chr7	143069890	143070090	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001115085, exon 3 of 3)	exon (NM_001115085, exon 3 of 3)	622.0	NM_001115085	56844.0	Mm.139675	NM_020285	ENSMUSG00000045752	Tssc4	AA241958|ESTM671070	tumor-suppressing subchromosomal transferable fragment 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44927268-1	chr7	44927168	44927368	+	649.0	f1_balb.idr	intron (NM_001077264, intron 1 of 22)	intron (NM_001077264, intron 1 of 22)	2222.0	NM_007458	11771.0	Mm.6877	NM_007458	ENSMUSG00000060279	Ap2a1	Adtaa	adaptor-related protein complex 2, alpha 1 subunit	protein-coding	-0.961808289013217	-0.941143281918953	-0.953353259954851	-0.9565109400711	-0.961015840561242	-0.938024035002784	0.030272756003758	-0.955957512668286	3.38343409954699	0.275427317743097	1
Merged-chr7-98830106-2	chr7	98830006	98830206	+	569.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5006.0	NM_001285794	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-11293627-1	chr19	11293527	11293727	+	722.0	f1_balb.idr	intron (NR_045317, intron 2 of 2)	ERVB4_1B-I_MM-int|LTR|ERVK	-9814.0	NM_183190	269063.0	Mm.268940	NM_183190	ENSMUSG00000054523	Ms4a5	-	membrane-spanning 4-domains, subfamily A, member 5	protein-coding	1.54318838145427	2.20691550804564	0.942398555537648	0.925429418648485	1.55730175782626	1.90260142396114	0.947167276621041	2.1503802714889	0.534086177565147	0.681640893532242	0.995882295196263
Merged-chr7-113186624-1	chr7	113186524	113186724	+	558.0	f0_balb.idr	Intergenic	Intergenic	-20841.0	NM_001243048	11865.0	Mm.33970	NM_007489	ENSMUSG00000055116	Arntl	Arnt3|BMAL1b|Bmal1|MOP3|bHLHe5|bmal1b'	aryl hydrocarbon receptor nuclear translocator-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-12612630-3	chr10	12612543	12612743	+	930.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011682, intron 50 of 73)	intron (NM_011682, intron 50 of 73)	249092.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	2.96942932258888	2.55498152192644	1.77330183944392	2.11155936574753	3.22638219597623	2.42865545486061	2.92239230158882	2.74197986760586	0.837235972476322	0.28201342407075	0.784607383364121
Merged-chr2-153609798-4	chr2	153609747	153609947	+	944.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22934.0	NM_001195390	99311.0	Mm.294478	NM_133850	ENSMUSG00000056941	Commd7	2310010I22Rik|AW060956|mU3	COMM domain containing 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70868714-4	chr8	70868615	70868815	+	954.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026964, intron 4 of 4)	CpG	4775.0	NM_026964	234388.0	Mm.295791	NM_026964	ENSMUSG00000007721	Ccdc124	1810023B24Rik	coiled-coil domain containing 124	protein-coding	3.50915617792722	5.18875997223284	4.06383302929814	4.42129474784912	4.46340481790539	5.15025209384231	4.57515032052702	5.23999844268919	0.586087067369632	0.175418758082279	0.64507792995643
Merged-chr8-126548020-4	chr8	126547903	126548103	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45433.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-109060327-1	chr9	109060227	109060427	+	572.5	f1_balb.idr	promoter-TSS (NM_011637)	promoter-TSS (NM_011637)	-604.0	NM_011637	22040.0	Mm.439964	NM_011637	ENSMUSG00000049734	Trex1	AU041952	three prime repair exonuclease 1	protein-coding	0.607617402529784	0.645637257356499	1.40254830942316	0.623816028433043	1.53056161478032	0.648369097902019	1.30188546116956	1.36083794214009	1.60973647871176	0.322223378744491	0.824314733086652
Merged-chr18-36793864-4	chr18	36793786	36793986	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025594)	promoter-TSS (NM_025594)	-37.0	NM_025594	66492.0	Mm.251155	NM_025594	ENSMUSG00000001383	Zmat2	2610510D14Rik|2900082I05Rik	zinc finger, matrin type 2	protein-coding	0.208459929779134	0.358868942706673	4.102912733906	0.277077898028376	0.219275574661563	0.368391258894381	2.60311089020361	0.283786202762834	-1.89905433881041	1	1
Merged-chr12-86213220-2	chr12	86213120	86213320	+	644.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28638.0	NM_027405	70373.0	Mm.252967	NM_027405	ENSMUSG00000021254	Gpatch2l	1700020O03Rik|4732487G21Rik|A630090I05Rik|Kiaa1152	G patch domain containing 2 like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-53931625-2	chr11	53931525	53931725	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39922.0	NM_011396	20520.0	Mm.42253	NM_011396	ENSMUSG00000018900	Slc22a5	Lstpl|Octn2|jvs	solute carrier family 22 (organic cation transporter), member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-54076462-7	chr10	54076374	54076574	+	985.4285890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008548)	promoter-TSS (NM_008548)	552.0	NR_038016	100502920.0	Mm.403982	NR_038016	ENSMUSG00000097069	Gm16998	-	predicted gene, 16998	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167300313-7	chr2	167300219	167300419	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_019835, exon 9 of 9)	3' UTR (NM_019835, exon 9 of 9)	48859.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-147823422-2	chr2	147823322	147823522	+	559.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13A|LTR|ERVK	112729.0	NR_046014	381384.0	Mm.259809	NR_046014	ENSMUSG00000051986	A530006G24Rik	Gm1003	RIKEN cDNA A530006G24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-84137561-2	chr17	84137461	84137661	+	570.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50386.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-25281925-4	chr4	25281861	25282061	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355512)	promoter-TSS (NM_001355512)	-140.0	NM_001355512	67490.0	Mm.226295	NM_026194	ENSMUSG00000040359	Ufl1	1810074P20Rik|AI429228|Kiaa0776|Maxer|Rcad|mKIAA0776	UFM1 specific ligase 1	protein-coding	4.95797625791793	4.79141414986564	4.18372272569214	4.56665476098273	4.93457781342585	5.16755040837765	5.0538824605439	5.14929814148925	0.504335181756714	0.132751912530974	0.570335681503924
Merged-chr5-122401452-2	chr5	122401352	122401552	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019824, intron 2 of 6)	B3|SINE|B2	9574.0	NM_019824	56378.0	Mm.275942	NM_019824	ENSMUSG00000029465	Arpc3	1110006A04Rik|p21-ARC|p21-Ar|p21Arc	actin related protein 2/3 complex, subunit 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-160368689-2	chr2	160368589	160368789	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1624.0	NM_010658	16658.0	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-49381207-4	chr2	49381117	49381317	+	796.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70269.0	NM_172663	227867.0	Mm.29167	NM_172663	ENSMUSG00000069495	Epc2	5830499L14|D2Ertd694e	enhancer of polycomb homolog 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99392867-4	chr15	99392760	99392960	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026669)	promoter-TSS (NM_026669)	-87.0	NM_026669	110213.0	Mm.16769	NM_026669	ENSMUSG00000023010	Tmbim6	5031406P05Rik|Bi1|Tegt	transmembrane BAX inhibitor motif containing 6	protein-coding	7.48148118883263	7.53723742083378	7.25447099191179	8.07735838510079	7.80350274639353	7.60927692201799	7.72076301945504	7.66658430340142	0.0836551332947029	0.623973909767592	0.980499297484271
Merged-chr6-86793652-4	chr6	86793593	86793793	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013471)	promoter-TSS (NM_013471)	-109.0	NM_013471	11746.0	Mm.259702	NM_013471	ENSMUSG00000029994	Anxa4	AI265406|AIV|AW106930|Anx4|Xanx-4	annexin A4	protein-coding	5.67288435259329	4.90878467468547	3.5621113311376	4.58917134997002	5.67595067238023	4.58725284215109	4.49669397213286	4.307261740949	0.00560331505661011	0.990477629615669	0.998431161219273
Merged-chr6-72186016-2	chr6	72185916	72186116	+	821.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49561.0	NM_153778	71093.0	Mm.87449	NM_153778	ENSMUSG00000037621	Atoh8	4933425C05Rik|Hath6|Math6|bHLHa21|okadin	atonal bHLH transcription factor 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-38712154-4	chr16	38712092	38712292	+	834.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020260, intron 1 of 11)	intron (NM_020260, intron 1 of 11)	843.0	NM_020260	12549.0	Mm.370848	NM_020260	ENSMUSG00000022799	Arhgap31	5830477L08Rik|AU041750|Cdgap|D330026I07Rik	Rho GTPase activating protein 31	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-72243845-2	chr7	72243745	72243945	+	857.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001024703, intron 4 of 22)	intron (NM_001024703, intron 4 of 22)	62750.0	NM_001024703	244049.0	Mm.217412	NM_001024703	ENSMUSG00000032776	Mctp2	Gm489	multiple C2 domains, transmembrane 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-4365510-2	chr18	4365410	4365610	+	554.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_040328, intron 2 of 3)	intron (NR_040328, intron 2 of 3)	-10082.0	NM_001361008	67440.0	Mm.49826	NM_026157	ENSMUSG00000024234	Mtpap	0610027A18Rik|AW551379|Papd1	mitochondrial poly(A) polymerase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-55232857-2	chr6	55232769	55232969	+	859.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001142781, intron 5 of 17)	intron (NM_001142781, intron 5 of 17)	29486.0	NM_001142781	330323.0	Mm.268997	NM_177883	ENSMUSG00000038022	Mindy4	C330043M08Rik|Fam188b|Gm1406	MINDY lysine 48 deubiquitinase 4	protein-coding	0.1739398464834	0.197614845007775	0.189926886119134	1.04764270678031	0.703831345971615	0.873596657753693	0.191627998096355	0.184997856365006	0.280205604726323	0.892337549610912	1
Merged-chr11-83424893-2	chr11	83424793	83424993	+	843.1999509999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013759, intron 4 of 5)	intron (NM_001013759, intron 4 of 5)	4628.0	NM_001013759	237891.0	Mm.340523	NM_001013759	ENSMUSG00000020686	Gas2l2	-	growth arrest-specific 2 like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97877608-3	chr6	97877504	97877704	+	832.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113198, intron 1 of 9)	intron (NM_001113198, intron 1 of 9)	-52213.0	NM_001178049	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-65970837-2	chr5	65970737	65970937	+	707.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081104, exon 4 of 5)	exon (NM_001081104, exon 4 of 5)	3713.0	NM_001081104	231252.0	Mm.140015	NM_001081104	ENSMUSG00000029205	Chrna9	2410015I05Rik|Acra9|EG666827|Gm8311	cholinergic receptor, nicotinic, alpha polypeptide 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35739330-2	chr17	35739244	35739444	+	861.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33106.0	NR_045459	74601.0	Mm.410840	NR_045459	ENSMUSG00000092171	4833427F10Rik	-	RIKEN cDNA 4833427F10 gene	ncRNA	3.10834628820136	1.67067892535713	2.18047391403881	1.31739450836007	2.02136410884188	2.87297578033737	2.46495330505756	2.85160067867595	0.632680841162984	0.498005620547734	0.936897994490085
Merged-chr7-88998095-4	chr7	88997993	88998193	+	868.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	340694.0	NM_028343	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101367650-4	chr15	101367530	101367730	+	990.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028770, intron 1 of 8)	intron (NM_028770, intron 1 of 8)	-1722.0	NR_035462	100316694.0		NR_035462	ENSMUSG00000088459	Mir1941	mmu-mir-1941	microRNA 1941	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27038883-2	chr2	27038783	27038983	+	801.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	-10885.0	NM_001177627	227659.0	Mm.41203	NM_172659	ENSMUSG00000036067	Slc2a6	A330096C23|F630103L12Rik|Glut6|Glut9	solute carrier family 2 (facilitated glucose transporter), member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-12734216-4	chr19	12734099	12734299	+	917.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	31433.0	NM_170786	12803.0	Mm.290924	NM_053007	ENSMUSG00000079415	Cntf	AI429687	ciliary neurotrophic factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-23912252-4	chr18	23912163	23912363	+	977.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42425.0	NM_027007	69256.0	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-21223754-4	chr11	21223662	21223862	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15270.0	NM_139061	245944.0	Mm.170103	NM_139061	ENSMUSG00000020128	Vps54	Hcc8|Vps54l|mSLP8|wr	VPS54 GARP complex subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127022227-2	chr7	127022127	127022327	+	868.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_010772)	TTS (NM_010772)	-1016.0	NM_001102563	69017.0	Mm.392047	NM_001102563	ENSMUSG00000045114	Prrt2	1500031I19Rik|AI195361|DSPB3	proline-rich transmembrane protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-104233181-4	chr8	104233103	104233303	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045642, intron 5 of 8)	intron (NR_045642, intron 5 of 8)	15355.0	NR_045642	57813.0	Mm.183110	NM_021028	ENSMUSG00000035824	Tk2	AU024611|mt-TK	thymidine kinase 2, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-135706004-4	chr7	135705910	135706110	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081117, intron 6 of 13)	intron (NM_001081117, intron 6 of 13)	10369.0	NM_001081117	17345.0	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-42315928-2	chr19	42315828	42316028	+	752.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356589, intron 5 of 14)	intron (NM_001356589, intron 5 of 14)	-35758.0	NR_037246	100526549.0		NR_037246	ENSMUSG00000093234	Mir3085	mir-3085|mmu-mir-3085	microRNA 3085	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-148081122-2	chr4	148081022	148081222	+	907.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009642, intron 4 of 4)	intron (NM_009642, intron 4 of 4)	6942.0	NM_009642	11610.0	Mm.46247	NM_009642	ENSMUSG00000029007	Agtrap	3300002E14Rik|AT1R|Atrap|D4Wsu124e	angiotensin II, type I receptor-associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-101796849-2	chr4	101796749	101796949	+	637.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146146, intron 18 of 18)	ORR1C2|LTR|ERVL-MaLR	47173.0	NM_001033790	545662.0	Mm.331735	NM_001033790	ENSMUSG00000035201	B020004J07Rik	-	RIKEN cDNA B020004J07 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-149264602-1	chr2	149264502	149264702	+	815.0	f1_balb.idr	Intergenic	L1Md_F|LINE|L1	-140647.0	NM_021405	58214.0	Mm.117117	NM_021405	ENSMUSG00000033156	Cst10	DD72	cystatin 10 (chondrocytes)	protein-coding	-1.35914981169748	-1.4788811654986	-1.48870847347744	-1.49678091685108	-1.5090967730776	-1.16749470945895	-1.48648378635949	-1.49533595334674	0.921594974740572	0.790977103014573	1
Merged-chr8-83698457-4	chr8	83698299	83698499	+	952.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177262, intron 1 of 21)	intron (NM_177262, intron 1 of 21)	780.0	NM_177262	320795.0	Mm.213000	NM_177262	ENSMUSG00000057672	Pkn1	DBK|F730027O18Rik|PAK1|PRK1|Pkn|Prkcl1|Stk3	protein kinase N1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-155405885-4	chr2	155405783	155405983	+	857.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_019825, exon 10 of 14)	exon (NM_019825, exon 10 of 14)	24027.0	NM_178111	68728.0	Mm.293605	NM_178111	ENSMUSG00000038375	Trp53inp2	1110029F20Rik|Tp53inp2	transformation related protein 53 inducible nuclear protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-30513006-3	chr15	30512881	30513081	+	803.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355502, intron 3 of 21)	intron (NM_001355502, intron 3 of 21)	340388.0	NM_008729	18163.0	Mm.321648	NM_008729	ENSMUSG00000022240	Ctnnd2	Catnd2|Nprap|neurojugin	catenin (cadherin associated protein), delta 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-119896856-1	chr2	119896756	119896956	+	1000.0	f0_c57.idr	promoter-TSS (NM_001164274)	promoter-TSS (NM_001164274)	-372.0	NM_001164274	29808.0	Mm.87532	NM_013720	ENSMUSG00000033943	Mga	AV312082|C130042M01Rik|C80739|D030062C11Rik|Mad5	MAX gene associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-50786698-1	chr19	50786598	50786798	+	559.0	f1_balb.idr	Intergenic	Lx5b|LINE|L1	-108052.0	NM_001290356	58178.0	Mm.313672	NM_021377	ENSMUSG00000043531	Sorcs1	Sorcs|mSorCS	sortilin-related VPS10 domain containing receptor 1	protein-coding	-1.06997269762433	-1.30473905204845	-1.3145270772132	-1.32256725251374	-1.06385251204029	-1.30261794616352	-1.3123112828633	-1.32112806497905	0.0394047164033882	0.991001358494878	1
Merged-chr14-30024694-2	chr14	30024594	30024794	+	607.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175343, intron 1 of 7)	L1MB4|LINE|L1	2061.0	NM_175343	218865.0	Mm.259916	NM_172264	ENSMUSG00000015970	Chdh	AU041472|D630034H06Rik	choline dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-182954855-2	chr1	182954755	182954955	+	997.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016928)	promoter-TSS (NM_016928)	67.0	NM_016928	53791.0	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-40679833-4	chr19	40679725	40679925	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009848, intron 1 of 9)	Lx5|LINE|L1	20055.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-103722194-3	chr5	103722111	103722311	+	736.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TTTTG)n|Simple_repeat|Simple_repeat	-31951.0	NM_133919	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119404881-2	chr11	119404781	119404981	+	835.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	14409.0	NR_035453	100316690.0		NR_035453	ENSMUSG00000088015	Mir1932	mir-1932|mmu-mir-1932	microRNA 1932	ncRNA	0.441602936263573	0.489823805408388	1.65556903763565	0.462404593035751	0.444754081145377	1.43310020140436	1.67394414518531	0.464543500677965	0.813679660991169	0.802270875808085	0.998431161219273
Merged-chr11-70055759-2	chr11	70055659	70055859	+	915.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_009714, intron 2 of 8)	intron (NM_009714, intron 2 of 8)	1404.0	NM_001291132	11889.0	Mm.6559	NM_009714	ENSMUSG00000020884	Asgr1	ASGPR1|Asgr|Asgr-1|HL-1	asialoglycoprotein receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-118802923-3	chr7	118802825	118803025	+	847.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027815, intron 21 of 30)	intron (NM_027815, intron 21 of 30)	52688.0	NM_001168220	66356.0	Mm.482278	NM_023197	ENSMUSG00000030980	Knop1	2310008H09Rik|Tsg118	lysine rich nucleolar protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-194994447-2	chr1	194994347	194994547	+	728.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17488.0	NR_033564	320400.0	Mm.417608	NR_033564	ENSMUSG00000097325	Gm16897	C030002c11rik	predicted gene, 16897	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3427578-5	chr12	3427469	3427669	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_030694)	promoter-TSS (NR_030694)	712.0	NM_172421	75302.0	Mm.120475	NM_172421	ENSMUSG00000037486	Asxl2	4930556B16Rik|mKIAA1685	additional sex combs like 2, transcriptional regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167502495-2	chr2	167502395	167502595	+	681.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360930)	promoter-TSS (NM_001360930)	-948.0	NR_153838	81018.0	Mm.22225	NM_030743	ENSMUSG00000006418	Rnf114	1110008J21Rik|AI225886|AW549494|Zfp228|Zfp313|Znf228	ring finger protein 114	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-63122645-4	chr14	63122522	63122722	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007798, intron 1 of 9)	CpG	160.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167320559-2	chr2	167320459	167320659	+	986.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019835, intron 1 of 8)	intron (NM_019835, intron 1 of 8)	28619.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-77047375-4	chr18	77047259	77047459	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027721)	promoter-TSS (NM_027721)	-63.0	NM_027721	71206.0	Mm.35803	NM_027721	ENSMUSG00000025420	Katnal2	3110023G01Rik|4933439B08Rik	katanin p60 subunit A-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-7281767-2	chr19	7281667	7281867	+	706.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080388, intron 14 of 16)	intron (NM_001080388, intron 14 of 16)	13488.0	NM_001320554	104383.0	Mm.283859	NM_054048	ENSMUSG00000024968	Rcor2	1A13|AW122124|CoREST|Rcor|Rcor1	REST corepressor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31391093-2	chr14	31390993	31391193	+	904.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347585, intron 2 of 7)	B4A|SINE|B4	26584.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4269212-3	chr19	4269128	4269328	+	983.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356620)	promoter-TSS (NM_001356620)	5.0	NM_001356620	245857.0	Mm.248388	NM_198113	ENSMUSG00000034616	Ssh3	SSH-3|SSH-3L	slingshot protein phosphatase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97294249-4	chr6	97294168	97294368	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 22 of 23)	intron (NM_145148, intron 22 of 23)	-41488.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-82126825-4	chr15	82126750	82126950	+	970.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001310435)	TTS (NM_001310435)	-1072.0	NM_172428	76457.0	Mm.440373	NM_172428	ENSMUSG00000068114	Ccdc134	2310042L06Rik|AW208859	coiled-coil domain containing 134	protein-coding	4.45880407593776	4.97952748667984	4.27393827467779	4.74981817910486	4.53018474544617	4.1116914323969	3.03624799627842	4.48623807270327	-0.605474359694131	0.170403872638451	0.63774766639248
Merged-chr1-173741831-4	chr1	173741727	173741927	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001204910)	promoter-TSS (NM_001204910)	-18.0	NM_001204910	226691.0	Mm.440876	NM_001204910	ENSMUSG00000073490	Ifi207	AI607873|Pyhin-A|pyhinA	interferon activated gene 207	protein-coding	6.07104899638546	6.46923008831011	5.88698402081938	5.89344239891476	4.69718777345088	5.13869411391507	4.84802490911708	4.60986075958902	-1.44245806727222	3.0099176348519e-07	2.32487071564075e-05
Merged-chr7-100503536-5	chr7	100503427	100503627	+	802.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153527, intron 7 of 7)	intron (NM_153527, intron 7 of 7)	10169.0	NM_011671	22228.0	Mm.171378	NM_011671	ENSMUSG00000033685	Ucp2	Slc25a8|UCP 2|UCPH	uncoupling protein 2 (mitochondrial, proton carrier)	protein-coding	1.31551495963148	1.01922244787447	1.72318921574311	1.53705518467372	2.37942171384594	1.80255727150431	1.86254572304783	0.984994457907544	1.32884684160872	0.266810004008474	0.769853847164169
Merged-chr2-102154969-4	chr2	102154876	102155076	+	997.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178886, intron 1 of 5)	Charlie19a|DNA|hAT-Charlie	31484.0	NM_178886	241576.0	Mm.489740	NM_178886	ENSMUSG00000048058	Ldlrad3	6430500P08|AI194318|Lrad3	low density lipoprotein receptor class A domain containing 3	protein-coding	0.236327198870351	0.265471194396399	1.12870526950197	0.248720386593342	0.238186725425217	0.267572289260423	1.23743255677445	0.753309495971555	0.74047151501005	0.709132553136134	1
Merged-chr9-40814852-3	chr9	40814735	40814935	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	13562.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-57795762-2	chr10	57795662	57795862	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_020561, intron 1 of 7)	intron (NM_020561, intron 1 of 7)	1218.0	NM_020561	57319.0	Mm.2379	NM_020561	ENSMUSG00000019872	Smpdl3a	0610010C24Rik|AI529588|ASM3A|ASML3|ASML3A	sphingomyelin phosphodiesterase, acid-like 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-40424224-3	chr8	40424110	40424310	+	938.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178395, intron 1 of 12)	CpG	395.0	NM_001357249	70546.0	Mm.34326	NM_178395	ENSMUSG00000039470	Zdhhc2	5730415P04Rik|6430583A19Rik|DHHC-2	zinc finger, DHHC domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-60249397-2	chr14	60249297	60249497	+	756.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001362440, intron 1 of 14)	intron (NM_001362440, intron 1 of 14)	2082.0	NM_001362440	71844.0	Mm.258051	NM_170591	ENSMUSG00000114797	Nupl1	1700017F11Rik|Nup58|mKIAA0410	nucleoporin like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-3000076-4	chr9	2999974	3000174	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GSAT_MM|Satellite|Satellite	38669.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-40823773-4	chr4	40823679	40823879	+	994.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022305, intron 1 of 5)	intron (NM_022305, intron 1 of 5)	26359.0	NR_039584	100628614.0		NR_039584	ENSMUSG00000096377	Mir5123	mmu-mir-5123|mu-mir-5123	microRNA 5123	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-82921124-2	chr18	82921024	82921224	+	748.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033307)	promoter-TSS (NR_033307)	-564.0	NR_033307	75853.0	Mm.420737	NR_033307		4930592I03Rik	-	RIKEN cDNA 4930592I03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-88139454-2	chr8	88139354	88139554	+	584.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172757, intron 2 of 14)	ORR1C2|LTR|ERVL-MaLR	1248.0	NR_106039	102465649.0		NR_106039	ENSMUSG00000099080	Mir7071	Gm27623|mmu-mir-7071	microRNA 7071	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-35757465-1	chr18	35757365	35757565	+	618.0	f1_c57bl6.idr	Intergenic	(A)n|Simple_repeat|Simple_repeat	-14094.0	NM_019912	56550.0	Mm.180052	NM_019912	ENSMUSG00000091896	Ube2d2a	1500034D03Rik|Ubc2e|Ube2d2|ubc4	ubiquitin-conjugating enzyme E2D 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-11465067-4	chr19	11465018	11465218	+	964.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4250.0	NM_001166376	73656.0	Mm.440719	NM_028595	ENSMUSG00000079419	Ms4a6c	2200009H22Rik|2210417N07Rik	membrane-spanning 4-domains, subfamily A, member 6C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-20847900-2	chr18	20847800	20848000	+	667.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177038, intron 14 of 28)	RLTR11A|LTR|ERVK	48178.0	NM_029491	75964.0	Mm.273769	NM_029491	ENSMUSG00000033382	Trappc8	5033403J15Rik|AI845423|D030074E01Rik|Trs85|mKIAA1012	trafficking protein particle complex 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43563282-4	chr4	43563180	43563380	+	914.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011602)	promoter-TSS (NM_011602)	646.0	NM_013497	12913.0	Mm.12407	NM_013497	ENSMUSG00000028466	Creb3	AU044960|AW538053|C80076|LZIP|LZIP-1|LZIP-2|Luman	cAMP responsive element binding protein 3	protein-coding	0.863031716511765	0.764340166973113	0.401120108084029	0.561316743965452	1.12039183218201	0.410119485891505	0.402741947598119	0.83017071735928	0.427318785990899	0.805465191216166	1
Merged-chr15-5951100-4	chr15	5951015	5951215	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	93589.0	NR_155428	105245876.0	Mm.128197	NR_155428		Gm41259	-	predicted gene, 41259	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-36325288-4	chr15	36325166	36325366	+	924.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR24B_MM|LTR|ERV1	-42119.0	NM_001357631	30945.0	Mm.5181	NM_013923	ENSMUSG00000022280	Rnf19a	AA032313|Dorfin|Rnf19|UIP117|Ubce7ip2|XYbp	ring finger protein 19A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-110921878-3	chr7	110921790	110921990	+	565.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194464, intron 9 of 20)	intron (NM_194464, intron 9 of 20)	16905.0	NR_045267	100504184.0	Mm.441327	NR_045267	ENSMUSG00000087160	Gm16336	-	predicted gene 16336	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-41825737-3	chr13	41825639	41825839	+	911.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145875, intron 2 of 6)	intron (NM_001145875, intron 2 of 6)	21749.0	NM_175417	109254.0	Mm.25195	NM_175417	ENSMUSG00000058022	Adtrp	9530008L14Rik	androgen dependent TFPI regulating protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-39855891-3	chr18	39855792	39855992	+	744.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	82395.0	NM_011033	18459.0	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118490182-5	chr11	118490089	118490289	+	753.200012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001359368)	TTS (NM_001359368)	13357.0	NM_001359368	217364.0	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71504043-4	chr17	71503938	71504138	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023294, intron 13 of 16)	intron (NM_023294, intron 13 of 16)	22819.0	NM_023294	67052.0	Mm.225956	NM_023294	ENSMUSG00000024056	Ndc80	2610020P18Rik|AV139730|HEC|HEC1|Kntc2	NDC80 kinetochore complex component	protein-coding	3.41862746813553	2.56710489101632	3.43341155188107	3.337662607696	2.12080329962435	3.96042551309757	3.12055620224424	1.81614792615352	-0.322875938686679	0.666942358015143	0.992549218580075
Merged-chr3-88325760-2	chr3	88325660	88325860	+	933.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_020003, exon 2 of 6)	exon (NM_020003, exon 2 of 6)	737.0	NM_020003	56700.0	Mm.439922	NM_020003	ENSMUSG00000001418	Glmp	0610031J06Rik|AB027141|NCU-G1	glycosylated lysosomal membrane protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-89074182-4	chr15	89074076	89074276	+	868.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040417, exon 2 of 4)	non-coding (NR_040417, exon 2 of 4)	1678.0	NR_040417	69120.0	Mm.276391	NR_040417	ENSMUSG00000087331	1810021B22Rik	-	RIKEN cDNA 1810021B22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-113842002-4	chr5	113841924	113842124	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011779)	TTS (NM_011779)	-11523.0	NM_009151	20345.0	Mm.332590	NM_009151	ENSMUSG00000048163	Selplg	CD162|Psgl-1|Psgl1|Selp1|Selpl	selectin, platelet (p-selectin) ligand	protein-coding	3.41348228400433	3.59120689398537	3.80969972029334	3.12707512665057	2.55529166165402	3.13764471744571	3.24227082894085	3.3182690176487	-0.678329417513697	0.243417955049239	0.740751247850617
Merged-chr17-35426239-2	chr17	35426135	35426335	+	818.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_207648, intron 3 of 4)	intron (NM_207648, intron 3 of 4)	1358.0	NM_207648	110557.0	Mm.439827	NM_207648	ENSMUSG00000073409	H2-Q6	0610037M15Rik|H-2Q6|Qa-6|Qa6	histocompatibility 2, Q region locus 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-58307079-4	chr11	58306968	58307168	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_182996)	promoter-TSS (NM_182996)	-1.0	NM_182996	103836.0	Mm.41440	NM_182996	ENSMUSG00000037243	Zfp692	AI746306|AI839920|Zfp692-ps|Znf692	zinc finger protein 692	protein-coding	4.48645343688255	3.57559686779869	4.10011579326585	4.14784522538268	2.64072988183906	4.07795031360852	3.03369961727728	3.5433707601397	-1.0009408525566	0.061937998030699	0.369594877506131
Merged-chr8-116243250-4	chr8	116243157	116243357	+	971.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-261758.0	NM_029297	75465.0	Mm.23114	NM_029297	ENSMUSG00000034467	Dynlrb2	1700009A04Rik|DNLC2B|Dncl2b	dynein light chain roadblock-type 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-47727267-4	chr9	47727134	47727334	+	952.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	90974.0	NR_046048	100038460.0	Mm.447649	NR_046048		Gm10677	-	predicted gene 10677	ncRNA	4.35370209540354	3.70923672333053	3.29475829923729	3.97163235817938	3.75022305608898	4.04808724954542	3.52310934313742	3.99088257100686	-0.0823241415547056	0.865948519377663	0.998431161219273
Merged-chr2-164798761-3	chr2	164798647	164798847	+	962.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133240, intron 3 of 5)	B2_Mm2|SINE|B2	6134.0	NM_133240	170789.0	Mm.277878	NM_133240	ENSMUSG00000017307	Acot8	PTE-2|Pte1	acyl-CoA thioesterase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-64450059-2	chr9	64449959	64450159	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001134399, intron 1 of 24)	intron (NM_001134399, intron 1 of 24)	64433.0	NM_001134399	214058.0	Mm.127721	NM_172522	ENSMUSG00000036466	Megf11	2410080H04Rik|D130061K05	multiple EGF-like-domains 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-114673095-2	chr9	114672995	114673195	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15736.0	NM_146229	235661.0	Mm.128627	NM_146229	ENSMUSG00000032435	Dync1li1	1110053F02Rik|Dnclic1|LIC-1	dynein cytoplasmic 1 light intermediate chain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10946864-4	chr19	10946756	10946956	+	958.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023731, intron 1 of 3)	intron (NM_023731, intron 1 of 3)	2410.0	NM_023731	108673.0	Mm.294908	NM_023731	ENSMUSG00000024732	Ccdc86	4933411H20Rik|6720480F16Rik|D19Ertd678e	coiled-coil domain containing 86	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-103893225-4	chr13	103893122	103893322	+	966.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005868, intron 1 of 26)	intron (NM_001005868, intron 1 of 26)	27364.0	NM_001289473	59079.0	Mm.277354	NM_021563	ENSMUSG00000021709	Erbin	1700028E05Rik|Erbb2ip|mKIAA1225	Erbb2 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-88872833-2	chr4	88872733	88872933	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7368.0	NM_177348	230405.0	Mm.246593	NM_177348	ENSMUSG00000045364	Ifne	Ifn-tau-1|Ifne1|Ifnt1|Infe1	interferon epsilon	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-22631072-2	chr11	22630972	22631172	+	815.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	118789.0	NM_153596	103765.0	Mm.221274	NM_153596	ENSMUSG00000049904	Tmem17	AI503894|AW049890	transmembrane protein 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81296230-2	chr10	81296130	81296330	+	862.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001293647, intron 1 of 17)	intron (NM_001293647, intron 1 of 17)	3267.0	NM_001146687	18717.0	Mm.24222	NM_008844	ENSMUSG00000034902	Pip5k1c	AI115456|AI835305|Pip5kIgamma	phosphatidylinositol-4-phosphate 5-kinase, type 1 gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-128736319-2	chr6	128736217	128736417	+	658.5	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-13271.0	NM_001099918	100043861.0	Mm.66911	NM_001099918	ENSMUSG00000079299	Klrb1	4930431A04Rik|Gm4696|Klrb1g|Klrb6|Ly-55|Ly55|NKR-P1G|Nkrp-1e|Nkrp1g	killer cell lectin-like receptor subfamily B member 1	protein-coding	1.45105581605685	2.27863538518886	2.34318840385955	1.95887755803287	3.09391943417476	2.29720439058637	1.60104051500435	3.80965883870207	1.79896060634962	0.043136544129286	0.297786108436809
Merged-chr2-117019729-1	chr2	117019629	117019829	+	983.0	f1_c57bl6.idr	Intergenic	Intergenic	-101342.0	NM_001277256	114715.0	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	0.61010862019681	0.452362793134158	1.86317549643941	0.425220401824662	0.407736657333953	0.455714123431362	1.64345275802872	0.849782233480143	-0.223380328968292	0.894596289125217	0.998431161219273
Merged-chr2-150903906-3	chr2	150903774	150903974	+	850.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356549, intron 1 of 13)	intron (NM_001356549, intron 1 of 13)	857.0	NM_024465	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-130646933-4	chr7	130646839	130647039	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004468, intron 3 of 21)	intron (NM_001004468, intron 3 of 21)	-45617.0	NM_001347637	57752.0	Mm.86322	NM_021314	ENSMUSG00000030852	Tacc2	mKIAA4180	transforming, acidic coiled-coil containing protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-27019665-2	chr8	27019565	27019765	+	561.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4134.0	NM_153592	244373.0	Mm.277699	NM_153592	ENSMUSG00000031483	Erlin2	BC036333|C87251|Spfh2	ER lipid raft associated 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165882639-2	chr2	165882539	165882739	+	913.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001281926)	promoter-TSS (NM_001281926)	-361.0	NM_001281926	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-152406758-7	chr3	152406642	152406842	+	935.9206539999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001287139, intron 1 of 13)	B1_Mus1|SINE|Alu	10058.0	NM_001287139	108946.0	Mm.379292	NM_198416	ENSMUSG00000039068	Zzz3	3110065C23Rik|6430567E01Rik|AA408566|AI481057|AW556059|R75514	zinc finger, ZZ domain containing 3	protein-coding	0.198590586169559	0.905189149869679	0.0630320819754745	0.495637165086528	0.202995553697612	0.0704635860739131	0.0643714339912637	0.231061481975071	-2.44162355510508	0.219389723941181	1
Merged-chr13-101906582-4	chr13	101906478	101906678	+	965.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-138361.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-45260351-2	chr9	45260251	45260451	+	618.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_136903, intron 5 of 5)	intron (NR_136903, intron 5 of 5)	6356.0	NR_106054	102466803.0		NR_106054	ENSMUSG00000098361	Mir7086	Gm27643|mmu-mir-7086	microRNA 7086	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-94425943-3	chr3	94425848	94426048	+	652.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001357713, exon 6 of 6)	exon (NM_001357713, exon 6 of 6)	10703.0	NM_016901	53814.0	Mm.440422	NM_016901	ENSMUSG00000028141	Oaz3	AZ3|Az-3|Oaz-t	ornithine decarboxylase antizyme 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-87056026-4	chr5	87055940	87056140	+	961.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVB4_3-LTR_MM|LTR|ERVK	36515.0	NM_001029867	231396.0	Mm.439851	NM_001029867	ENSMUSG00000070704	Ugt2b36	-	UDP glucuronosyltransferase 2 family, polypeptide B36	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3795255-7	chr4	3795117	3795317	+	929.857117	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	40438.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	1.01548732093573	1.40732473924899	0.938946752708	1.19582599928498	1.24641398133067	0.763275309278923	1.47231988116591	0.921707735827816	-0.0604351576994411	0.964285337936286	0.998431161219273
Merged-chr1-105998308-3	chr1	105998360	105998560	+	908.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122675, intron 1 of 12)	intron (NM_001122675, intron 1 of 12)	8054.0	NM_001122675	227449.0	Mm.210188	NM_001122675	ENSMUSG00000038866	Zcchc2	9930114B20Rik|AW212015	zinc finger, CCHC domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-25225597-2	chr8	25225497	25225697	+	681.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR17B_Mm|LTR|ERVK	-24055.0	NM_177089	320165.0	Mm.308452	NM_177089	ENSMUSG00000065954	Tacc1	4833447E04Rik|AA960202|B230378H13Rik	transforming, acidic coiled-coil containing protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-61078021-2	chr18	61077921	61078121	+	934.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008809, intron 16 of 22)	intron (NM_008809, intron 16 of 22)	-27551.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-99107847-4	chr9	99107767	99107967	+	970.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029094, intron 2 of 23)	intron (NM_029094, intron 2 of 23)	32344.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-66919806-2	chr10	66919706	66919906	+	617.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_138560, intron 1 of 4)	RMER17C|LTR|ERVK	578.0	NR_138560	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-86167288-3	chr15	86167216	86167416	+	812.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145475, intron 1 of 12)	intron (NM_145475, intron 1 of 12)	-18412.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-69535407-1	chr13	69535307	69535507	+	1000.0	f0_balb.idr	Intergenic	Intergenic	-1543.0	NM_001169131	210106.0	Mm.315959	NM_198600	ENSMUSG00000034575	Papd7	LAK-1|POLK|Pols|TRF4|TRF4-1	PAP associated domain containing 7	protein-coding	2.57836279973022	3.59706867486284	3.34451684338876	2.60856322420948	3.24184102440235	3.2387452380532	2.25711639355807	1.49430369839017	-0.613747540321167	0.437338765358411	0.908551975084304
Merged-chr14-50971046-3	chr14	50970905	50971105	+	839.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER20B|LTR|ERVK	14864.0	NM_001123371	667034.0	Mm.482171	NM_001123371	ENSMUSG00000068417	Pnp2	-	purine-nucleoside phosphorylase 2	protein-coding	1.5207755110368	1.93330541316047	1.09484581770083	1.61140804822932	1.31592992752084	0.903199841069058	1.56194945891217	0.875263194414227	-1.39520136145229	0.282385148281788	0.784878071602676
Merged-chr10-59309139-2	chr10	59309039	59309239	+	676.458374	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-14157.0	NM_001316371	18451.0	Mm.2212	NM_011030	ENSMUSG00000019916	P4ha1	AL022634|P4ha	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-119327068-4	chr13	119326959	119327159	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT2F|LTR|ERVL	81952.0	NM_008710	18115.0	Mm.132584	NM_008710	ENSMUSG00000116207	Nnt	4930423F13Rik|AI323702|BB168308	nicotinamide nucleotide transhydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-31531806-2	chr15	31531706	31531906	+	998.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172606)	promoter-TSS (NM_172606)	-769.0	NM_172606	223455.0	Mm.272185	NM_172606	ENSMUSG00000039100	March6	3830408G03|F830029L24Rik|mKIAA0597	membrane-associated ring finger (C3HC4) 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19341466-2	chr7	19341366	19341566	+	558.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3605.0	NM_001127324	13870.0	Mm.280913	NM_007948	ENSMUSG00000003549	Ercc1	Ercc-1	excision repair cross-complementing rodent repair deficiency, complementation group 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-64252590-2	chr2	64252490	64252690	+	788.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-154552.0	NM_001267847	60344.0	Mm.130769	NM_021716	ENSMUSG00000075324	Fign	fi|fidget	fidgetin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-87439137-4	chr12	87439062	87439262	+	990.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001102565, intron 2 of 5)	intron (NM_001102565, intron 2 of 5)	-1405.0	NR_037228	100526546.0		NR_037228	ENSMUSG00000105428	Mir3068	mir-3068|mmu-mir-3068	microRNA 3068	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-88379160-4	chr10	88379101	88379301	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001004164)	promoter-TSS (NM_001004164)	-211.0	NM_001004164	432486.0	Mm.335190	NM_001004164	ENSMUSG00000035311	Gnptab	EG432486|mKIAA1208	N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-145248012-2	chr7	145247913	145248113	+	838.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_132644, intron 24 of 24)	B4|SINE|B4	35998.0	NR_132644	233979.0	Mm.102235	NM_146206	ENSMUSG00000048677	Tpcn2	D830047E22Rik|Gm35086	two pore segment channel 2	protein-coding	2.06755843896643	1.50158441646284	0.819749875051345	0.802937314625841	2.01819189351474	2.13617520142296	0.824469210097864	0.805909538437853	0.528645916333122	0.716618036627646	0.998431161219273
Merged-chr15-80948430-4	chr15	80948308	80948508	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009634)	promoter-TSS (NM_009634)	-82.0	NM_009634	11564.0	Mm.38151	NM_009634	ENSMUSG00000022407	Adsl	Adl|Asl	adenylosuccinate lyase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-7206700-2	chr10	7206630	7206830	+	585.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_172546, intron 1 of 12)	intron (NM_172546, intron 1 of 12)	5507.0	NM_172546	215748.0	Mm.37984	NM_172546	ENSMUSG00000015202	Cnksr3	6820402C05|BC024086|Magi1	Cnksr family member 3	protein-coding	0.796436384855037	1.17187888955714	1.01007500263755	0.413009702427283	0.404172443786634	0.803806356548088	0.609615098978635	0.414099058582883	-1.89581588029968	0.27407811278477	1
Merged-chr1-124103208-3	chr1	124103108	124103308	+	586.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-57649.0	NM_199021	269109.0	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	-0.0133793018196838	0.0156972061212885	1.03269449454673	-0.000955533233626293	-0.0115094982083846	0.0177748880544765	1.1385605342457	0.000332479179570022	0.234927363342133	0.916013151406334	1
Merged-chr7-73613416-2	chr7	73613316	73613516	+	727.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-55021.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-145088607-1	chr6	145088507	145088707	+	609.0	f1_c57bl6.idr	Intergenic	Intergenic	-12450.0	NM_007532	12035.0	Mm.4606	NM_007532	ENSMUSG00000030268	Bcat1	BCATc|Eca39	branched chain aminotransferase 1, cytosolic	protein-coding	1.28310213469704	1.42620675381931	2.4662126249338	2.39172044858366	1.897361465456	1.16051050428472	2.71986950741162	1.55358938129551	-0.0697911843644883	0.949153856504373	0.998431161219273
Merged-chr11-4388725-1	chr11	4388625	4388825	+	852.0	f0_balb.idr	intron (NM_029458, intron 10 of 10)	L1M4b|LINE|L1	52357.0	NM_029458	75828.0	Mm.159592	NM_029458	ENSMUSG00000020419	Hormad2	4930529M09Rik	HORMA domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-4194877-4	chr11	4194810	4195010	+	852.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134023, intron 1 of 8)	intron (NM_134023, intron 1 of 8)	8077.0	NM_134023	103724.0	Mm.28140	NM_134023	ENSMUSG00000034412	Tbc1d10a	AI447804|EPI64|Tbc1d10|mFLJ00288	TBC1 domain family, member 10a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-156189429-3	chr2	156189310	156189510	+	745.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7237.0	NM_172674	228829.0	Mm.427078	NM_172674	ENSMUSG00000038116	Phf20	6820402O20Rik	PHD finger protein 20	protein-coding	1.5112896512364	1.98378676450032	2.28891160354615	1.32220638838484	3.88215575053252	3.14725725151756	3.35590741856709	3.02514481545638	3.17638114594989	0.000111701351707933	0.00334967423878111
Merged-chr19-36833501-5	chr19	36833369	36833569	+	790.200012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163635)	promoter-TSS (NM_001163635)	-763.0	NM_001163635	74493.0	Mm.249310	NM_001163635	ENSMUSG00000024811	Tnks2	5430432P15Rik|AA517131|AI662480|ARTD6|TNKS-2|Tank2	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-45698287-4	chr11	45698202	45698402	+	882.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-109781.0	NR_045876	100009664.0	Mm.415439	NR_045876		F630206G17Rik	-	RIKEN cDNA F630206G17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-143948169-4	chr2	143948046	143948246	+	987.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024281, intron 23 of 23)	intron (NM_024281, intron 23 of 23)	32815.0	NM_019771	56431.0	Mm.28919	NM_019771	ENSMUSG00000015932	Dstn	2610043P17Rik|ADF|AU042046|Dsn|corn1|sid23p	destrin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-61317178-2	chr14	61317078	61317278	+	738.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7425.0	NM_177337	219144.0	Mm.206566	NM_177337	ENSMUSG00000043157	Arl11	ARLTS1|C730007L20Rik	ADP-ribosylation factor-like 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-24978943-4	chr7	24978836	24979036	+	935.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001290469, exon 22 of 23)	exon (NM_001290469, exon 22 of 23)	-6208.0	NM_010261	14470.0	Mm.22473	NM_010261	ENSMUSG00000003380	Rabac1	2310040I06Rik|Gbpap1|PRA1|prenylin	Rab acceptor 1 (prenylated)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-124851236-4	chr4	124851133	124851333	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001142727)	promoter-TSS (NM_001142727)	474.0	NM_153566	230734.0	Mm.258568	NM_153566	ENSMUSG00000028889	Yrdc	AV303379|BC023823|IRIP|ITIP	yrdC domain containing (E.coli)	protein-coding	0.323269848999416	0.274547629214529	0.105289898047999	0.362263330650958	0.425246122591834	0.11025552506569	0.106178244773616	0.564492313618752	0.448237639517751	0.818759976593708	1
Merged-chr1-64735120-2	chr1	64735020	64735220	+	657.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_022721, exon 2 of 2)	exon (NM_022721, exon 2 of 2)	2630.0	NM_001042659	14367.0	Mm.150813	NM_022721	ENSMUSG00000045005	Fzd5	5330434N09Rik|AI427138|Fz-5|Fz5|mFz5	frizzled class receptor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-132686966-4	chr2	132686871	132687071	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358260)	promoter-TSS (NM_001358260)	40.0	NM_001358260	73747.0	Mm.284114	NM_028637	ENSMUSG00000044991	1110034G24Rik	-	RIKEN cDNA 1110034G24 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-104178393-2	chr12	104178315	104178515	+	565.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24543.0	NM_008458	16625.0	Mm.422814	NM_008458	ENSMUSG00000066361	Serpina3c	1A1|Kalbp|Klkbp|spi2	serine (or cysteine) peptidase inhibitor, clade A, member 3C	protein-coding	1.28537101669287	1.07724857275655	1.24421674303267	2.10838959652667	0.963375249016779	0.812346766112936	2.41594169624232	0.772294223754822	-0.0430986233440606	0.974239758188019	0.998431161219273
Merged-chr2-97394013-1	chr2	97393913	97394113	+	652.0	f1_c57bl6.idr	intron (NM_001289742, intron 5 of 7)	L1_Mus4|LINE|L1	-73644.0	NM_001289744	241568.0	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	-1.84303373260285	-1.81303463126392	-1.82210660711932	-1.82955859819738	-1.84092785115721	-1.81106869625141	-1.8200529106377	-1.54273750312762	1.50114612804783	0.670102668014672	1
Merged-chr17-36992901-3	chr17	36992801	36993001	+	878.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3397.0	NM_001115075	240095.0	Mm.246609	NM_001115075	ENSMUSG00000024459	H2-M5	CRW2|D130003B22Rik|H-2M5	histocompatibility 2, M region locus 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-109394636-3	chr4	109394537	109394737	+	854.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11620.0	NR_131195	102635290.0	Mm.427859	NR_131195		Ttc39aos1	Gm12750|lincRNA-EPS	Ttc39a opposite strand RNA 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-73561775-4	chr2	73561645	73561845	+	873.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18593.0	NM_007389	11435.0	Mm.4583	NM_007389	ENSMUSG00000027107	Chrna1	AI385656|AI608266|Achr-1|Acra	cholinergic receptor, nicotinic, alpha polypeptide 1 (muscle)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-29794715-2	chr10	29794615	29794815	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-258848.0	NM_028351	72780.0	Mm.45191	NM_028351	ENSMUSG00000019880	Rspo3	2810459H04Rik|AW742308|Cristin1|Thsd2	R-spondin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-75698249-4	chr2	75698129	75698329	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132727, intron 1 of 1)	intron (NR_132727, intron 1 of 1)	6434.0	NR_132727	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	3.70758369821652	4.00585917256296	4.49520387244019	3.69316878293722	4.07072048244384	4.30096482052668	3.57273142303957	4.31005115026606	0.112328510020971	0.806555041651458	0.998431161219273
Merged-chr6-145517161-2	chr6	145517057	145517257	+	711.166626	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-82232.0	NM_028742	74071.0	Mm.441497	NM_028742	ENSMUSG00000054966	Lmntd1	4933403M22Rik|AI482300|Ifltd1|Lmna-rs1|Lmna1	lamin tail domain containing 1	protein-coding	0.386805995538375	0.438371627852396	0.422089137616528	0.409136761883293	0.940485738136389	0.441967917540462	1.90919902231329	1.75437512567049	5.05298994358312	0.00302340755817392	0.0455714119132797
Merged-chr1-23268303-3	chr1	23268208	23268408	+	814.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3961.0	NR_029533	387225.0		NR_029533	ENSMUSG00000065405	Mir30a	Mirn30a|mir-30a|mmu-mir-30a	microRNA 30a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-32222947-2	chr11	32222847	32223047	+	807.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291818)	promoter-TSS (NM_001291818)	-654.0	NM_001291818	13650.0	Mm.11545	NM_010117	ENSMUSG00000020282	Rhbdf1	C16ORF8|Dist|Dist1|Egfr-rs|mKIAA4242	rhomboid 5 homolog 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-58257017-2	chr15	58256917	58257117	+	860.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42125.0	NM_026346	67731.0	Mm.25683	NM_026346	ENSMUSG00000022358	Fbxo32	4833442G10Rik|AI430017|ATROGIN1|Gm20361|MAFbx	F-box protein 32	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-74547320-5	chr11	74547247	74547447	+	866.093323	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001015046, intron 2 of 24)	intron (NM_001015046, intron 2 of 24)	42811.0	NM_001015046	380711.0	Mm.425690	NM_001015046	ENSMUSG00000038807	Rap1gap2	AU067654|Garnl4|Gm1561|mKIAA1039	RAP1 GTPase activating protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-77078481-4	chr11	77078372	77078572	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_030756)	promoter-TSS (NR_030756)	-35.0	NM_001012309	237859.0	Mm.156195	NM_001012309	ENSMUSG00000037958	Nsrp1	8030451K07|AI851076|AL022898|Ccdc55|NSpr70|NSrp70	nuclear speckle regulatory protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-37163337-2	chr14	37163241	37163441	+	689.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28019.0	NM_078478	66092.0	Mm.182912	NM_078478	ENSMUSG00000041028	Ghitm	1010001P14Rik|C77840|MICS1|PTD010|Tmbim5	growth hormone inducible transmembrane protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-66801727-4	chr15	66801628	66801828	+	985.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029841, intron 1 of 7)	intron (NM_001029841, intron 1 of 7)	30101.0	NM_001029841	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-174279264-1	chr2	174279164	174279364	+	647.0	f1_balb.idr	Intergenic	Intergenic	-5056.0	NM_019690	14683.0	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-79099374-7	chr3	79099256	79099456	+	787.68573	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001099624, intron 3 of 23)	L1_Mus3|LINE|L1	45531.0	NM_001310536	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-157458538-4	chr1	157458495	157458695	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356419)	promoter-TSS (NM_001356419)	27.0	NM_001356419	226527.0	Mm.215960	NM_001033284	ENSMUSG00000033488	Cryzl2	-	crystallin zeta like 2	protein-coding	4.44386144157403	4.71288423399324	3.9712849183629	4.21922866732293	4.58155004738308	3.62120833411916	3.68701821302008	3.73499244789946	-0.50340808859337	0.267122247582875	0.769922980421045
Merged-chr2-163597907-2	chr2	163597807	163598007	+	977.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-4407.0	NM_181734	76080.0	Mm.89828	NM_029512	ENSMUSG00000017679	Ttpal	3110080A02Rik|5830472M02Rik	tocopherol (alpha) transfer protein-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123277535-3	chr5	123277445	123277645	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49355.0	NM_026000	67151.0	Mm.278997	NM_026000	ENSMUSG00000029440	Psmd9	1500011J20Rik|2610202L11Rik|Bridge-1|P27	proteasome (prosome, macropain) 26S subunit, non-ATPase, 9	protein-coding	2.13273437284242	1.23882274023802	1.47958051301639	1.43662757372179	3.17729595470229	1.78473025662347	2.46768354021809	3.08015510287749	2.57652109549285	0.0082767339880686	0.0950392391042467
Merged-chr19-8774558-4	chr19	8774485	8774685	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028418)	promoter-TSS (NR_028418)	100.0	NR_015538	100039957.0	Mm.220886	NR_015538		Gm2518	D630022E15Rik	interferon induced transmembrane protein 2 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-17766235-2	chr5	17766135	17766335	+	694.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	69661.0	NM_001159555	12491.0	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 molecule	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-142765335-2	chr6	142765235	142765435	+	778.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009908, intron 3 of 7)	intron (NM_009908, intron 3 of 7)	8649.0	NM_009908	12764.0	Mm.3820	NM_009908	ENSMUSG00000030282	Cmas	AW208911|CMPNeu5Ac|D6Bwg0250e	cytidine monophospho-N-acetylneuraminic acid synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-137815189-3	chr2	137815095	137815295	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-441389.0	NM_001025431	228662.0	Mm.153405	NM_145534	ENSMUSG00000062098	Btbd3	mKIAA0952	BTB (POZ) domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97684152-2	chr11	97684052	97684252	+	722.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_139311, exon 20 of 20)	3' UTR (NM_139311, exon 20 of 20)	-1800.0	NM_001085500	217149.0	Mm.29659	NM_001085500	ENSMUSG00000078695	Cisd3	Mel-13|Mel13	CDGSH iron sulfur domain 3	protein-coding	0.182616505825265	-0.0690627856646886	-0.0742673066827623	0.552159054542877	-0.0839631306897236	-0.0678898436072963	-0.0731192514371074	0.559957672368482	-0.389490926344257	0.86538828404106	1
Merged-chr13-41601872-4	chr13	41601762	41601962	+	902.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE-int|LTR|ERVL-MaLR	-4354.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94375927-1	chr10	94375827	94376027	+	557.0	f1_balb.idr	intron (NM_001359762, intron 1 of 4)	B4A|SINE|B4	63978.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-53690143-4	chr17	53690056	53690256	+	968.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028232)	promoter-TSS (NM_028232)	-841.0	NM_028232	72415.0	Mm.153202	NM_028232	ENSMUSG00000023940	Sgo1	3300001M08Rik|C81037|Sgol1	shugoshin 1	protein-coding	0.536458630375811	0.0120371375101801	0.55525491382206	0.00315602308225477	0.138085521688605	0.0131698013264555	0.328179994679053	0.00383047983793572	-1.45970651646785	0.494679561659806	1
Merged-chr11-22814551-4	chr11	22814440	22814640	+	996.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45195.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-75431445-1	chr9	75431345	75431545	+	617.0	f1_c57bl6.idr	Intergenic	Intergenic	-10079.0	NM_001039522	235497.0	Mm.41508	NM_001006122	ENSMUSG00000042487	Leo1	Gm185	Leo1, Paf1/RNA polymerase II complex component	protein-coding	-1.50811478453619	-0.99851579554048	-1.48484165847197	-1.49312904261012	-1.50577282675516	-1.47256636097272	-1.48255773576353	-1.49164560481169	-2.24133836997777	0.518237887813808	1
Merged-chr11-61868973-2	chr11	61868873	61869073	+	743.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13881.0	NM_013881	29869.0	Mm.162025	NM_013881	ENSMUSG00000004798	Ulk2	A830085I22Rik|AU015340|Unc51.2|mKIAA0623	unc-51 like kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-90248869-4	chr3	90248759	90248959	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013901, intron 1 of 3)	intron (NM_013901, intron 1 of 3)	667.0	NM_013901	30791.0	Mm.294709	NM_013901	ENSMUSG00000052310	Slc39a1	Zip1|Zirtl	solute carrier family 39 (zinc transporter), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-132094622-4	chr2	132094548	132094748	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355431, intron 2 of 6)	intron (NM_001355431, intron 2 of 6)	50460.0	NM_001355431	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-77033157-4	chr10	77033053	77033253	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031196)	promoter-TSS (NM_031196)	-59.0	NM_031196	20509.0	Mm.265060	NM_031196	ENSMUSG00000001436	Slc19a1	AI323572|RFC|RFC-1|RFC1	solute carrier family 19 (folate transporter), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-56808830-4	chr6	56808725	56808925	+	921.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11012.0	NM_001362213	210973.0	Mm.57295	NM_145958	ENSMUSG00000059486	Kbtbd2	BC022962|Bklhd1|mKIAA1489	kelch repeat and BTB (POZ) domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-32934831-1	chr5	32934731	32934931	+	576.0	f0_c57.idr	intron (NM_001360014, intron 24 of 40)	B2_Mm2|SINE|B2	71110.0	NM_001170567	277854.0	Mm.101524	NM_177786	ENSMUSG00000037426	Depdc5	AV016528	DEP domain containing 5	protein-coding	2.33737041610811	3.11726722679431	1.09206431531371	1.55604634566218	2.44286608527626	2.77036679522861	1.10026905053933	1.06778892171523	-0.399025260807378	0.832322335576056	0.998431161219273
Merged-chr17-29396363-4	chr17	29396234	29396434	+	977.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35420.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	0.856342312399876	1.64939982995743	0.916680603677773	2.04073100997736	1.45534823129112	2.79774250099379	2.01901014090964	0.89863752739839	1.34726202679911	0.288846320500093	0.794492928326483
Merged-chr8-42865042-2	chr8	42864942	42865142	+	723.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	276444.0	NM_177742	244448.0	Mm.64542	NM_177742	ENSMUSG00000031651	Triml1	4933403D14|BC050188	tripartite motif family-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-54772187-2	chr11	54772087	54772287	+	634.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178626, intron 1 of 5)	intron (NM_178626, intron 1 of 5)	15516.0	NM_178626	72729.0	Mm.29476	NM_178626	ENSMUSG00000052298	Cdc42se2	2810404F18Rik|AA408783|AA536669|SPEC2	CDC42 small effector 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-77515039-4	chr11	77514942	77515142	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026185)	promoter-TSS (NM_026185)	-75.0	NM_026185	67477.0	Mm.432526	NM_026185	ENSMUSG00000000686	Abhd15	1300007F04Rik	abhydrolase domain containing 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-9013103-1	chr10	9013003	9013203	+	812.0	f1_c57bl6.idr	Intergenic	Intergenic	-127033.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0.292097708121173	-0.0726535301934483	-0.0779830055822162	-0.0820991804598221	0.30075357196653	-0.0714530046819773	0.70679607119978	-0.0813798064233754	1.83795254934174	0.424205639913201	1
Merged-chr15-78581562-4	chr15	78581436	78581636	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_155437)	promoter-TSS (NR_155437)	53.0	NR_155437	102640742.0	Mm.253544	NR_155437	ENSMUSG00000116097	Gm36738	-	predicted gene, 36738	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-105013271-4	chr12	105013143	105013343	+	997.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3434.0	NM_172500	212073.0	Mm.212688	NM_172500	ENSMUSG00000054150	Syne3	KASH3|nesprin-3	spectrin repeat containing, nuclear envelope family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-101972253-2	chr5	101972139	101972339	+	570.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 4 of 66)	intron (NM_172882, intron 4 of 66)	97682.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-57950161-4	chr4	57950070	57950270	+	975.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011660, intron 3 of 4)	intron (NM_011660, intron 3 of 4)	6241.0	NM_011660	22166.0	Mm.260618	NM_011660	ENSMUSG00000028367	Txn1	ADF|AW550880|Trx1|Txn	thioredoxin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-51771544-2	chr14	51771444	51771644	+	768.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177544, intron 1 of 1)	intron (NM_177544, intron 1 of 1)	2046.0	NM_177544	219033.0	Mm.343899	NM_177544	ENSMUSG00000060615	Ang4	Raa4|Rnase5d	angiogenin, ribonuclease A family, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-65529484-4	chr3	65529389	65529589	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027955)	promoter-TSS (NR_027955)	-75.0	NR_027955	71004.0	Mm.475465	NM_001033527	ENSMUSG00000074580	4931440P22Rik	-	RIKEN cDNA 4931440P22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-104109555-2	chr8	104109455	104109655	+	671.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009868, intron 1 of 11)	intron (NM_009868, intron 1 of 11)	-3682.0	NR_131138	546096.0	Mm.252264	NR_131138	ENSMUSG00000110053	Gm29682	Gm45664	predicted gene, 29682	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-113565269-2	chr11	113565169	113565369	+	547.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027216, intron 1 of 9)	intron (NM_027216, intron 1 of 9)	546.0	NM_001166503	69806.0	Mm.341021	NM_027216	ENSMUSG00000041654	Slc39a11	1810074D23Rik	solute carrier family 39 (metal ion transporter), member 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-20553161-3	chr11	20553010	20553210	+	826.622253	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021372, intron 1 of 1)	intron (NM_021372, intron 1 of 1)	9857.0	NM_021372	58172.0	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	2.06488074247774	1.73308382845638	3.33880606046603	2.02482291793565	1.93377002642178	2.95556242304202	3.17426430900503	2.33324108660617	0.418801555229074	0.627871794856065	0.980912176761026
Merged-chr5-146288177-4	chr5	146288152	146288352	+	979.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359991, intron 6 of 12)	intron (NM_001359991, intron 6 of 12)	57002.0	NM_153599	264064.0	Mm.260576	NM_153599	ENSMUSG00000029635	Cdk8	-	cyclin-dependent kinase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-65803588-2	chr18	65803488	65803688	+	902.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025468, intron 1 of 5)	(T)n|Simple_repeat|Simple_repeat	3010.0	NM_025468	66286.0	Mm.27800	NM_025468	ENSMUSG00000024516	Sec11c	1810029G24Rik|Sec11l3	SEC11 homolog C, signal peptidase complex subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-140680802-2	chr4	140680702	140680902	+	592.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14897.0	NM_001112722	72754.0	Mm.29329	NM_172415	ENSMUSG00000040964	Arhgef10l	2810441C07Rik	Rho guanine nucleotide exchange factor (GEF) 10-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-95838886-5	chr11	95838841	95839041	+	897.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163464, intron 1 of 7)	intron (NM_001163464, intron 1 of 7)	-3354.0	NM_023121	14710.0	Mm.46299	NM_023121	ENSMUSG00000038811	Gngt2	AV096488	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-48835077-2	chr9	48834917	48835117	+	728.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033324, intron 1 of 6)	CpG	928.0	NM_001033324	235320.0	Mm.457803	NM_001033324	ENSMUSG00000066687	Zbtb16	AI467657|PLZF|Zfp145|lu	zinc finger and BTB domain containing 16	protein-coding	0.323939634827635	0.386751099449453	0.367148722691773	2.13436126692894	0.328139262065518	0.693260888072677	0.371547017338931	1.95790298420439	-0.150162004063178	0.963415177155696	0.998431161219273
Merged-chr1-165655250-4	chr1	165655148	165655348	+	764.18335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038846, intron 5 of 5)	intron (NM_001038846, intron 5 of 5)	-20707.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-95328686-2	chr9	95328588	95328788	+	653.875	f0_balb.idr|f1_balb.idr	Intergenic	Lx4A|LINE|L1	78582.0	NM_018763	54371.0	Mm.212446	NM_018763	ENSMUSG00000033350	Chst2	AI428561|AW121776|C130041E03Rik|Chts2|GST-2|GlcNAc6ST|Gn6st	carbohydrate sulfotransferase 2	protein-coding	1.45805492671963	1.01984950831511	1.84850955934354	0.982653504164133	1.32668178975781	1.65543338074161	2.25389770730808	2.09562146746821	1.56310084724067	0.189664060492376	0.668111978211252
Merged-chr6-135229678-1	chr6	135229578	135229778	+	568.0	f1_c57bl6.idr	intron (NM_001362111, intron 10 of 12)	RSINE1|SINE|B4	18206.0	NM_001080552	14840.0	Mm.272306	NM_010352	ENSMUSG00000030206	Gsg1	-	germ cell associated 1	protein-coding	-1.3681463318974	-1.33624156493372	-1.34650167276047	-0.80669348975676	-1.36769697821496	-1.33401815676661	-1.34417900924365	-1.3534210303531	-2.3580830592467	0.49586638340111	1
Merged-chr17-87391847-2	chr17	87391747	87391947	+	747.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029298, intron 6 of 6)	intron (NM_029298, intron 6 of 6)	35894.0	NM_029298	75467.0	Mm.50108	NM_029298	ENSMUSG00000036557	Stpg4	1700011E24Rik|GSE	sperm tail PG rich repeat containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-35168609-2	chr4	35168509	35168709	+	590.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11125.0	NM_178061	214944.0	Mm.32968	NM_178061	ENSMUSG00000073910	Mob3b	8430436F23Rik|A430018A01Rik|Mobkl2b	MOB kinase activator 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-156420973-7	chr1	156420849	156421049	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346967)	promoter-TSS (NM_001346967)	-34.0	NM_001346967	77352.0	Mm.428709	NM_001033180	ENSMUSG00000026601	Axdnd1	9430070O13Rik|Gm979	axonemal dynein light chain domain containing 1	protein-coding	0.067922083528341	0.110430823286943	1.24207612563845	0.0863174345945675	0.0707141538125987	0.113398509531248	1.67289518712614	0.088204039773379	0.820779832763377	0.803239838866556	0.998431161219273
Merged-chr10-68373145-3	chr10	68373045	68373245	+	837.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52003.0	NR_045357	75148.0	Mm.23505	NR_045357	ENSMUSG00000112157	4930545H06Rik	-	RIKEN cDNA 4930545H06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118149675-3	chr11	118149560	118149760	+	945.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20441.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-109278838-4	chr2	109278729	109278929	+	862.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029790)	promoter-TSS (NM_029790)	-539.0	NM_029790	76894.0	Mm.330451	NM_029790	ENSMUSG00000057234	Mettl15	0610027B03Rik|AI303697|AW049952|Mett5d1	methyltransferase like 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-164865110-2	chr2	164865010	164865210	+	654.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR31F_MM|LTR|ERVK	-7402.0	NM_011125	18830.0	Mm.6105	NM_011125	ENSMUSG00000017754	Pltp	Bpife|OD107	phospholipid transfer protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-121985152-2	chr9	121985053	121985253	+	967.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289559, intron 1 of 2)	intron (NM_001289559, intron 1 of 2)	10873.0	NM_001289559	215494.0	Mm.402151	NM_153540	ENSMUSG00000066235	Pomgnt2	Ago61|C85492|Gtdc2	protein O-linked mannose beta 1,4-N-acetylglucosaminyltransferase 2	protein-coding	0.950042235757814	0.882012074551209	0.31988928219845	0.315882477787767	0.554923929802829	0.655044746425449	0.321040043179725	0.316580359814384	-1.35142219800583	0.482911246846079	1
Merged-chr6-72937483-1	chr6	72937383	72937583	+	810.0	f1_balb.idr	Intergenic	Intergenic	20749.0	NM_001039392	19240.0	Mm.3532	NM_025284	ENSMUSG00000079523	Tmsb10	Ptmb10|Tb10	thymosin, beta 10	protein-coding	0.769229603257146	1.19961831047857	0.622473412707077	0.612979467618557	1.59044001737323	1.4684310405557	0.625164563478196	1.1165467690845	1.9690674685194	0.204477645377834	0.69170614885264
Merged-chr16-55968844-2	chr16	55968744	55968944	+	650.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_024218, intron 3 of 5)	URR1A|DNA|hAT-Charlie	2569.0	NM_024218	68193.0	Mm.29221	NM_024218	ENSMUSG00000098274	Rpl24	0610008L05Rik|Bst	ribosomal protein L24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-63790420-4	chr11	63790345	63790545	+	889.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	131839.0	NM_018805	54710.0	Mm.274426	NM_018805	ENSMUSG00000070407	Hs3st3b1	3-OST-3B|3OST3B1|3Ost3b|AU041882|AW536289|Hs3st3b|m3-OST-3B	heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	protein-coding	2.69497345946372	2.36192894729827	2.83088847150783	2.66646254530384	1.99635259490984	2.22052568987277	2.76206233166925	2.36433249143082	-0.618475753034896	0.422954434083293	0.900322118218157
Merged-chr4-118180117-4	chr4	118179998	118180198	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172382)	promoter-TSS (NM_172382)	-55.0	NM_001161823	230674.0	Mm.234234	NM_172382	ENSMUSG00000033326	Kdm4a	D4Ertd222e|JHDM3A|Jmjd2|Jmjd2a|mKIAA0677	lysine (K)-specific demethylase 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-71888707-3	chr11	71888618	71888818	+	852.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	51404.0	NR_045942	73816.0	Mm.390391	NR_045942	ENSMUSG00000085528	4930401O10Rik	-	RIKEN cDNA 4930401O10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-116063983-2	chr2	116063883	116064083	+	579.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346047, intron 2 of 13)	intron (NM_001346047, intron 2 of 13)	636.0	NM_001346044	17536.0	Mm.247566	NM_010825	ENSMUSG00000027210	Meis2	A430109D20Rik|Mrg1|Stra10	Meis homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-78890854-4	chr7	78890742	78890942	+	889.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	2565.0	NR_029826	723884.0		NR_029826	ENSMUSG00000065609	Mir7-2	Mir7a2|Mirn7-2|mir-7a-2|mir-7a2|mmu-mir-7-2|mmu-mir-7a2	microRNA 7-2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-79916977-4	chr10	79916870	79917070	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177994)	promoter-TSS (NM_177994)	-1.0	NM_001359010	114229.0	Mm.191035	NM_053244	ENSMUSG00000035773	Kiss1r	Gpr54|KiSS-1|kiSS-1R	KISS1 receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-17713245-4	chr14	17713149	17713349	+	842.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113417, intron 1 of 9)	intron (NM_001113417, intron 1 of 9)	52289.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-110425738-2	chr11	110425638	110425838	+	589.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356352, intron 1 of 11)	L1MDa|LINE|L1	26636.0	NM_001356353	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-96374777-4	chr10	96374670	96374870	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MCa|LINE|L1	148563.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-85265693-1	chr1	85265593	85265793	+	690.666687	f1_balb.idr	intron (NM_175219, intron 1 of 7)	B3A|SINE|B2	4873.0	NM_175219	620078.0	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik	RIKEN cDNA C130026I21 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-181345748-1	chr1	181345648	181345848	+	857.6666869999999	f0_balb.idr	Intergenic	Intergenic	-6880.0	NM_001160212	72978.0	Mm.338083	NM_028408	ENSMUSG00000026514	Cnih3	2900075G08Rik|CNIH-3	cornichon family AMPA receptor auxiliary protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-16884109-4	chr6	16884011	16884211	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031198, intron 1 of 6)	intron (NM_031198, intron 1 of 6)	14330.0	NM_031198	21426.0	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-24271793-7	chr19	24271633	24271833	+	983.785706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008044, intron 3 of 4)	intron (NM_008044, intron 3 of 4)	8853.0	NM_008044	14297.0	Mm.7319	NM_008044	ENSMUSG00000059363	Fxn	FA|FARR|Frda|X25	frataxin	protein-coding	2.92654607178796	2.98098660650102	3.2726918718487	2.78788415933212	2.41031791556095	4.21244316400278	3.53080908453081	1.5088812451665	0.476170787140975	0.541371272645502	0.954866069207078
Merged-chr8-14888061-2	chr8	14887961	14888161	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_012000)	promoter-TSS (NM_012000)	-475.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-67394279-2	chr18	67394179	67394379	+	782.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_026473, intron 3 of 3)	B4|SINE|B4	3548.0	NM_026473	67951.0	Mm.181860	NM_026473	ENSMUSG00000001473	Tubb6	2310057H16Rik|BB220206	tubulin, beta 6 class V	protein-coding	0.309678673771972	0.187000235973145	0.501864043041033	0.176442405340777	0.887255272662056	0.188343821928813	0.638273527805975	0.341144345464074	1.78683107341441	0.348529354526324	1
Merged-chr6-134043798-4	chr6	134043702	134043902	+	793.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007961, intron 1 of 7)	intron (NM_007961, intron 1 of 7)	8102.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-52001779-4	chr12	52001676	52001876	+	900.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347404, intron 2 of 3)	intron (NM_001347404, intron 2 of 3)	4731.0	NM_029545	328092.0	Mm.2821	NM_029545	ENSMUSG00000020956	Dtd2	4930578F06Rik|6530401N04Rik|B830049N13Rik	D-tyrosyl-tRNA deacylase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-115766362-4	chr3	115766255	115766455	+	960.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51300.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-119251032-4	chr2	119250929	119251129	+	927.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13669.0	NM_016907	20732.0	Mm.104955	NM_016907	ENSMUSG00000027315	Spint1	HAI-1	serine protease inhibitor, Kunitz type 1	protein-coding	3.31263490265826	2.28766156369624	3.35650399879237	3.6717544638345	2.51767673329348	3.40758207944682	3.29620311084934	3.56810956827715	-0.00953258118435473	0.988116592592231	0.998431161219273
Merged-chr10-99261521-1	chr10	99261421	99261621	+	1000.0	f0_c57.idr	Intergenic	CpG	-1710.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-87044485-4	chr14	87044365	87044565	+	995.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019670, intron 4 of 27)	intron (NM_019670, intron 4 of 27)	96759.0	NM_019670	56419.0	Mm.440585	NM_019670	ENSMUSG00000022021	Diaph3	4930417P13Rik|Dia2|Diap3|Drf3|p134MDia2	diaphanous related formin 3	protein-coding	2.55351265143956	3.65277656030954	2.49885673209527	3.43562743096603	1.73888236440864	3.87534987288496	3.48814291334305	3.04815639843187	0.180009690029104	0.806039612865519	0.998431161219273
Merged-chr8-22423490-3	chr8	22423402	22423602	+	642.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020560, intron 4 of 6)	ORR1D2|LTR|ERVL-MaLR	12162.0	NM_020560	57312.0	Mm.289402	NM_020560	ENSMUSG00000031533	Mrps31	1500002D03Rik|AA960481|Imogen38|Imogen44	mitochondrial ribosomal protein S31	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24208251-3	chr17	24208102	24208302	+	704.166687	f1_balb.idr|f1_c57bl6.idr	exon (NM_010947, exon 1 of 6)	exon (NM_010947, exon 1 of 6)	1185.0	NM_010947	18209.0	Mm.259542	NM_010947	ENSMUSG00000036473	Ntn3	Ntn2l	netrin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115135074-4	chr11	115134953	115135153	+	950.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163753, intron 1 of 8)	intron (NM_001163753, intron 1 of 8)	-1061.0	NM_145634	246746.0	Mm.277387	NM_145634	ENSMUSG00000047798	Cd300lf	CLIM1|CLM-1|CLM1|Digr2|F730004D16Rik|IREM1|IgSF13|LMIR3|Pigr3	CD300 molecule like family member F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-103313779-4	chr4	103313684	103313884	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025909)	promoter-TSS (NM_025909)	-62.0	NM_025909	67013.0	Mm.30021	NM_025909	ENSMUSG00000035069	Oma1	2010001O09Rik|MPRP-1|ZMPOMA1	OMA1 zinc metallopeptidase	protein-coding	6.96044467894124	7.00902772097563	6.79919626464266	6.78662222452645	6.89817031238174	6.65974689776872	7.06623385696328	7.30900911889631	0.120930481521666	0.511220174206951	0.94512318675548
Merged-chr3-87340498-2	chr3	87340403	87340603	+	931.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	-17378.0	NM_009690	11801.0	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	-0.792998761647641	-0.777505919786429	-0.782432012239085	-0.786329388588684	-0.791990200531773	-0.776365404355073	0.250891359300201	-0.785642225977318	4.16170718474364	0.108167267363163	1
Merged-chr3-103872752-4	chr3	103872642	103872842	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104070, intron 3 of 22)	intron (NR_104070, intron 3 of 22)	12465.0	NM_008979	19260.0	Mm.395	NM_008979	ENSMUSG00000027843	Ptpn22	70zpep|PEP|Ptpn8	protein tyrosine phosphatase, non-receptor type 22 (lymphoid)	protein-coding	4.20218677073278	4.4077154433675	4.47983988311537	4.45711996607168	4.03636345355311	4.03114242203331	4.24111045013892	4.56487493994381	-0.196720840770359	0.620227775347033	0.978763712119577
Merged-chr10-91181792-4	chr10	91181712	91181912	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-10193.0	NM_001080130	21917.0	Mm.159684	NM_011605	ENSMUSG00000019961	Tmpo	5630400D24Rik|AI195756|AI606875|AW214352|AW547477|LAP2|TP	thymopoietin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-43478038-3	chr1	43477922	43478122	+	796.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010879, intron 1 of 4)	intron (NM_010879, intron 1 of 4)	32271.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-138398605-3	chr7	138398525	138398725	+	890.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183289)	promoter-TSS (NM_183289)	-895.0	NM_183289	70571.0	Mm.334297	NM_183289	ENSMUSG00000091002	Tcerg1l	5730476P14Rik	transcription elongation regulator 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-105805782-4	chr1	105805737	105805937	+	993.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009399, intron 1 of 9)	Lx8|LINE|L1	25114.0	NM_009399	21934.0	Mm.6251	NM_009399	ENSMUSG00000026321	Tnfrsf11a	Ly109|ODFR|OFE|Rank|TRANCE-R|mRANK	tumor necrosis factor receptor superfamily, member 11a, NFKB activator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-27269743-2	chr3	27269643	27269843	+	732.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR17B_Mm|LTR|ERVK	-47334.0	NM_009425	22035.0	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-61095725-4	chr18	61095643	61095843	+	904.1124880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1H|LTR|ERVL-MaLR	-9829.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-160019826-2	chr2	160019726	160019926	+	545.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_040499, intron 1 of 3)	intron (NR_040499, intron 1 of 3)	3173.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-146855841-4	chr2	146855754	146855954	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033298)	promoter-TSS (NM_001033298)	-35.0	NM_001033298	228730.0	Mm.292352	NM_001033298	ENSMUSG00000074749	Kiz	Gm114|Ncrna00153|Plk1s1	kizuna centrosomal protein	protein-coding	5.69671136128052	6.03918027516651	6.8167539597741	6.29235548914192	5.40555559911858	6.62155672511196	6.54419273138702	6.00977040056809	-0.0578598523478412	0.845085344566273	0.998431161219273
Merged-chr4-57952528-4	chr4	57952458	57952658	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011660, intron 1 of 4)	intron (NM_011660, intron 1 of 4)	3853.0	NM_011660	22166.0	Mm.260618	NM_011660	ENSMUSG00000028367	Txn1	ADF|AW550880|Trx1|Txn	thioredoxin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-138136612-4	chr1	138136512	138136712	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001268286, intron 2 of 28)	intron (NM_001268286, intron 2 of 28)	38514.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81696746-2	chr15	81696646	81696846	+	852.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164320, intron 1 of 5)	intron (NM_001164320, intron 1 of 5)	541.0	NM_001164320	214685.0	Mm.393287	NM_001164320	ENSMUSG00000063765	Chadl	AY100452|D930017K21Rik	chondroadherin-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-30620400-4	chr14	30620296	30620496	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011103, intron 1 of 17)	intron (NM_011103, intron 1 of 17)	5812.0	NM_011103	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-6337688-4	chr15	6337587	6337787	+	915.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001008702, intron 1 of 13)	intron (NM_001008702, intron 1 of 13)	37898.0	NM_001008702	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-60818851-4	chr19	60818759	60818959	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026437, intron 3 of 8)	intron (NM_026437, intron 3 of 8)	7304.0	NM_001347464	67894.0	Mm.26148	NM_026437	ENSMUSG00000024993	Fam45a	1810055E12Rik	family with sequence similarity 45, member A	protein-coding	6.59919450317096	6.07293249890022	5.54515514003341	6.15766307267705	6.09050299968121	6.66452473527619	6.9021796082342	6.50103375941638	0.447480407612748	0.0786539449436455	0.426880291661878
Merged-chr1-172643808-4	chr1	172643684	172643884	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1H2-int|LTR|ERVL-MaLR	-10810.0	NM_026725	68440.0	Mm.33024	NM_026725	ENSMUSG00000026544	Dusp23	1300005N15Rik|LDP-3	dual specificity phosphatase 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-116067185-2	chr2	116067025	116067225	+	761.0	f0_balb.idr|f1_balb.idr	promoter-TSS (NR_153841)	promoter-TSS (NR_153841)	-100.0	NR_153841	654793.0	Mm.448948	NR_153841		G630016G05Rik	-	RIKEN cDNA G630016G05 gene	ncRNA	0.993921376126875	1.65597087416972	1.44320028413461	1.99840712989439	1.48890226984991	2.15636603430827	1.26699782323546	1.81017689585709	0.457381909984682	0.691997438268439	0.997344206959699
Merged-chr9-37082357-3	chr9	37082229	37082429	+	901.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029838, intron 2 of 12)	intron (NM_001029838, intron 2 of 12)	64993.0	NM_148950	208076.0	Mm.260335	NM_148950	ENSMUSG00000035934	Pknox2	D230005H23Rik|Prep2	Pbx/knotted 1 homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-117299893-4	chr2	117299786	117299986	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011246, intron 5 of 16)	intron (NM_011246, intron 5 of 16)	42991.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106920815-4	chr11	106920602	106920802	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025481)	promoter-TSS (NM_025481)	13.0	NM_025481	66313.0	Mm.340955	NM_025481	ENSMUSG00000018363	Smurf2	2810411E22Rik|AI558114|AI649275	SMAD specific E3 ubiquitin protein ligase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-32224539-4	chr19	32224440	32224640	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 4 of 9)	intron (NM_144792, intron 4 of 9)	-13527.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-60368064-4	chr10	60367946	60368146	+	793.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159572, intron 5 of 6)	intron (NM_001159572, intron 5 of 6)	21195.0	NM_028732	74048.0	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-95704234-3	chr11	95704126	95704326	+	803.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045780, intron 1 of 1)	MLT1D|LTR|ERVL-MaLR	8528.0	NR_045780	432396.0	Mm.426849	NR_045780	ENSMUSG00000086191	Zfp652os	1110035M17Rik	zinc finger protein 652, opposite strand	ncRNA	-2.18375600819439	-2.15556918946382	-2.16409311609999	-2.17109492323169	-2.18177734563694	-2.01960173909294	-2.16216348594872	-2.16984160310277	0.759018020146679	0.829933115115583	1
Merged-chr10-94623859-2	chr10	94623759	94623959	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37660.0	NR_106070	102466817.0		NR_106070	ENSMUSG00000098544	Mir7211	Gm27536|mmu-mir-7211	microRNA 7211	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-3355590-4	chr5	3355508	3355708	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 2 of 7)	intron (NM_009873, intron 2 of 7)	11715.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-8577793-3	chr15	8577665	8577865	+	806.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	133042.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-55231762-2	chr15	55231662	55231862	+	801.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037937, intron 8 of 8)	intron (NM_001037937, intron 8 of 8)	-75988.0	NM_181277	12818.0	Mm.297859	NM_181277	ENSMUSG00000022371	Col14a1	5730412L22Rik|AW108078	collagen, type XIV, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-53234520-1	chr18	53234420	53234620	+	730.0	f1_c57bl6.idr	Intergenic	Intergenic	-11142.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127017369-4	chr7	127017258	127017458	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030240)	promoter-TSS (NM_030240)	-6.0	NM_030240	67278.0	Mm.345385	NM_030240	ENSMUSG00000107068	Pagr1a	2900092E17Rik|C77040|PA1|PAGR1	PAXIP1 associated glutamate rich protein 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117328905-3	chr8	117328801	117329001	+	865.31665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	-20269.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-107385511-2	chr11	107385411	107385611	+	922.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 1 of 9)	B3|SINE|B2	85209.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166179686-2	chr2	166179586	166179786	+	774.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-24003.0	NM_028072	72043.0	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-124695563-1	chr4	124695463	124695663	+	541.0	f1_c57bl6.idr	Intergenic	Intergenic	-2009.0	NM_026031	67205.0	Mm.259121	NM_026031	ENSMUSG00000028907	Utp11	2700082D03Rik|CGI-94|Cgi94|Utp11l	UTP11 small subunit processome component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-106375617-1	chr1	106375517	106375717	+	1000.0	f0_balb.idr	intron (NM_133821, intron 12 of 16)	Lx7|LINE|L1	171014.0	NR_106164	102466254.0		NR_106164	ENSMUSG00000098344	Mir3473f	Gm27846|mmu-mir-3473f	microRNA 3473f	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-108343577-4	chr9	108343509	108343709	+	812.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4222.0	NM_001311157	22258.0	Mm.3974	NM_011678	ENSMUSG00000032612	Usp4	F730026I20Rik|Unp|mKIAA4155	ubiquitin specific peptidase 4 (proto-oncogene)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-33083219-4	chr15	33083129	33083329	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018755)	promoter-TSS (NM_018755)	100.0	NM_176073	54381.0	Mm.158251	NM_018755	ENSMUSG00000039007	Cpq	1190003P12Rik|2610034C17Rik|Hls2|Lal-1|Pgcp	carboxypeptidase Q	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-119125713-4	chr4	119125624	119125824	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011400, intron 2 of 9)	intron (NM_011400, intron 2 of 9)	16979.0	NM_011400	20525.0	Mm.21002	NM_011400	ENSMUSG00000028645	Slc2a1	Glut-1|Glut1	solute carrier family 2 (facilitated glucose transporter), member 1	protein-coding	0.565043594601703	0.60307510590853	1.25420734574291	0.581259982583325	1.24310885148619	1.32509676820381	1.580968702399	0.582943937710819	1.99834189899009	0.225595231691616	0.717692251401288
Merged-chr7-141475949-2	chr7	141475849	141476049	+	946.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252588)	promoter-TSS (NM_001252588)	-431.0	NM_001252588	64540.0	Mm.489619	NM_053082	ENSMUSG00000025511	Tspan4	AI325509|AI746565|D130042I01Rik|NAG-2|Tm4sf7|Tspan-4	tetraspanin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-131411365-2	chr7	131411265	131411465	+	622.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175115)	promoter-TSS (NM_175115)	764.0	NM_025826	66885.0	Mm.334274	NM_025826	ENSMUSG00000030861	Acadsb	1300003O09Rik|2-MEBCAD|BB066609|SBCAD	acyl-Coenzyme A dehydrogenase, short/branched chain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-3538668-4	chr13	3538512	3538712	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008112, intron 1 of 10)	intron (NM_008112, intron 1 of 10)	537.0	NM_008112	14569.0	Mm.153226	NM_008112	ENSMUSG00000021218	Gdi2	GDI-B|GDIB|Gdi3	guanosine diphosphate (GDP) dissociation inhibitor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-34040338-2	chr13	34040238	34040438	+	572.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026512, intron 1 of 6)	MTC|LTR|ERVL-MaLR	2697.0	NM_026512	68021.0	Mm.140243	NM_026512	ENSMUSG00000038286	Bphl	2010012D11Rik|5730533B08Rik|AI115341	biphenyl hydrolase-like (serine hydrolase, breast epithelial mucin-associated antigen)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-126831132-2	chr4	126831032	126831232	+	648.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001035525, intron 8 of 23)	ID4_|SINE|ID	77362.0	NM_001035526	100317.0	Mm.206206	NM_133886	ENSMUSG00000028830	AU040320	A730047D20Rik|AAVR|Kiaa0319l	expressed sequence AU040320	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-42171185-3	chr10	42171077	42171277	+	840.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	105565.0	NM_019740	56484.0	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-43669466-7	chr7	43669348	43669548	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-2583.0	NM_145582	233189.0	Mm.26514	NM_145582	ENSMUSG00000038888	Ctu1	Atpbd3|BC005752	cytosolic thiouridylase subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-152933375-2	chr3	152933275	152933475	+	644.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_012028, intron 2 of 4)	intron (NM_012028, intron 2 of 4)	48832.0	NM_012028	26938.0	Mm.40915	NM_012028	ENSMUSG00000039037	St6galnac5	AI851940|Siat7e	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97197204-2	chr11	97197104	97197304	+	805.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-9312.0	NM_008379	16211.0	Mm.251013	NM_008379	ENSMUSG00000001440	Kpnb1	AA409963|IPOB|Impnb	karyopherin (importin) beta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125587289-3	chr6	125587180	125587380	+	627.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011708, intron 6 of 51)	intron (NM_011708, intron 6 of 51)	34332.0	NM_011708	22371.0	Mm.22339	NM_011708	ENSMUSG00000001930	Vwf	6820430P06Rik|AI551257|B130011O06Rik|C630030D09|F8VWF|VWD	Von Willebrand factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139397469-2	chr5	139397369	139397569	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028469, intron 2 of 4)	intron (NM_028469, intron 2 of 4)	7565.0	NM_001038703	80290.0	Mm.270003	NM_030258	ENSMUSG00000044197	Gpr146	BC003323|D830046C22Rik|PGR8	G protein-coupled receptor 146	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-71598771-7	chr2	71598610	71598810	+	868.9442140000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_039557, intron 2 of 3).2	intron (NR_039557, intron 2 of 3).2	-51956.0	NM_010054	13392.0	Mm.3896	NM_010054	ENSMUSG00000023391	Dlx2	AW121999|Dlx-2|Tes-1	distal-less homeobox 2	protein-coding	2.36654568390168	2.54951911891669	1.85599806968268	2.99269665050273	2.79701965211509	2.97643940174189	1.38127859736619	1.81340524266415	-0.185161939100472	0.839738627038563	0.998431161219273
Merged-chr2-163600167-2	chr2	163600067	163600267	+	585.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2147.0	NM_181734	76080.0	Mm.89828	NM_029512	ENSMUSG00000017679	Ttpal	3110080A02Rik|5830472M02Rik	tocopherol (alpha) transfer protein-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98945204-2	chr11	98945104	98945304	+	679.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177303, intron 1 of 8)	MIRb|SINE|MIR	5493.0	NM_001177303	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70135382-2	chr14	70135282	70135482	+	820.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021328, intron 8 of 8)	intron (NM_021328, intron 8 of 8)	18409.0	NM_146055	219158.0	Mm.218284	NM_146055	ENSMUSG00000033712	Ccar2	2610301G19Rik|Dbc1|mKIAA1967	cell cycle activator and apoptosis regulator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-11008993-4	chr8	11008877	11009077	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081212)	promoter-TSS (NM_001081212)	-547.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44389382-2	chr9	44389279	44389479	+	637.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_021395, exon 23 of 26)	exon (NM_021395, exon 23 of 26)	-7548.0	NM_001293631	14385.0	Mm.30087	NM_008063	ENSMUSG00000032114	Slc37a4	100043178|G6PT|G6pt1|GSD-1b|mG6PT	solute carrier family 37 (glucose-6-phosphate transporter), member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78848571-3	chr15	78848396	78848596	+	653.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027219, intron 2 of 2)	B1_Mur2|SINE|Alu	5849.0	NM_027219	104445.0	Mm.307488	NM_027219	ENSMUSG00000049521	Cdc42ep1	1810058K22Rik|AA980734|Borg5|CEP1|MSE55	CDC42 effector protein (Rho GTPase binding) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-5655322-3	chr2	5655210	5655410	+	882.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290374, intron 1 of 9)	MTC|LTR|ERVL-MaLR	20736.0	NM_001290376	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-79016602-2	chr11	79016502	79016702	+	617.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_013571, intron 17 of 17)	intron (NM_013571, intron 17 of 17)	-6995.0	NR_045873	790910.0	Mm.440410	NR_045873		Gm11201	-	predicted gene 11201	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-73591598-4	chr16	73591471	73591671	+	933.633301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	750496.0	NR_030464	751561.0		NR_030464	ENSMUSG00000104758	Mir691	Mirn691|mir-691|mmu-mir-691	microRNA 691	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33895895-5	chr16	33895759	33895959	+	737.713318	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 5 of 14)	intron (NM_001145884, intron 5 of 14)	66194.0	NM_001145884	16419.0	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-148444992-3	chr2	148444873	148445073	+	771.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1438.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36324379-2	chr1	36324279	36324479	+	805.25	f1_balb.idr|f1_c57bl6.idr	TTS (NR_033310)	TTS (NR_033310)	16646.0	NM_001172205	214855.0	Mm.34316	NM_145996	ENSMUSG00000037447	Arid5a	D430024K22Rik|Mrf1	AT rich interactive domain 5A (MRF1-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-63568501-2	chr9	63568401	63568601	+	767.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030068, intron 5 of 21)	intron (NM_030068, intron 5 of 21)	33992.0	NM_030068	78250.0	Mm.444612	NM_030068	ENSMUSG00000037801	Iqch	4921504K03Rik	IQ motif containing H	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-12210900-3	chr17	12210788	12210988	+	924.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026644, intron 5 of 8)	intron (NM_026644, intron 5 of 8)	91604.0	NM_026644	68262.0	Mm.258300	NM_026644	ENSMUSG00000023827	Agpat4	1500003P24Rik	1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-25834577-3	chr15	25834455	25834655	+	731.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8743.0	NM_001034851	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-119338045-4	chr2	119337996	119338196	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-11899.0	NR_030683	100043609.0	Mm.185068	NR_030683	ENSMUSG00000074912	Gm14207	Dll4	predicted gene 14207	ncRNA	5.80379445456435	5.04604663124951	6.21905033651684	5.17685318621054	5.989780352741	5.83130533387128	5.72100376255907	5.8044868761473	0.216377019164244	0.45827596840319	0.919570891419578
Merged-chr1-4963411-3	chr1	4963296	4963496	+	641.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177795, intron 2 of 5)	MTD|LTR|ERVL-MaLR	55338.0	NM_001290372	58175.0	Mm.103771	NM_021374	ENSMUSG00000002459	Rgs20	2900073E09Rik|Rgsz1	regulator of G-protein signaling 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-13632563-1	chr8	13632463	13632663	+	775.0	f0_balb.idr	intron (NM_009025, intron 1 of 23)	intron (NM_009025, intron 1 of 23)	45024.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71288077-2	chr8	71287977	71288177	+	809.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001142322, intron 1 of 39)	B1F2|SINE|Alu	15363.0	NM_001142323	17925.0	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46656867-1	chr19	46656767	46656967	+	731.0	f1_balb.idr	3' UTR (NM_001177812, exon 5 of 5)	3' UTR (NM_001177812, exon 5 of 5)	16133.0	NM_007809	13074.0	Mm.1262	NM_007809	ENSMUSG00000003555	Cyp17a1	Cyp17|p450c17	cytochrome P450, family 17, subfamily a, polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115473819-4	chr11	115473699	115473899	+	967.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001080934, exon 4 of 4)	3' UTR (NM_001080934, exon 4 of 4)	-1868.0	NM_177778	276905.0	Mm.38019	NM_177778	ENSMUSG00000057219	Armc7	A630084C13|BC023126	armadillo repeat containing 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-9337618-1	chr4	9337518	9337718	+	555.0	f0_balb.idr	intron (NM_001355183, intron 2 of 5)	intron (NM_001355183, intron 2 of 5)	68301.0	NM_028940	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-39449306-4	chr10	39449206	39449406	+	919.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122892, intron 2 of 12)	intron (NM_001122892, intron 2 of 12)	79507.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-53820223-4	chr1	53820177	53820377	+	876.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001883, intron 28 of 28)	intron (NM_001001883, intron 28 of 28)	-29147.0	NR_106149	102465783.0		NR_106149	ENSMUSG00000098443	Mir7681	Gm27806|mmu-mir-7681	microRNA 7681	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-120300232-3	chr13	120300130	120300330	+	942.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001037925)	promoter-TSS (NM_001037925)	-162.0	NM_001037925	625360.0	Mm.327506	NM_001037925	ENSMUSG00000094796	BC147527	-	cDNA sequence BC147527	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-58797464-4	chr15	58797371	58797571	+	929.966675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175212, intron 1 of 6)	intron (NM_175212, intron 1 of 6)	25956.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91081098-7	chr2	91080989	91081189	+	951.8095089999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10774.0	NM_001290765	68427.0	Mm.192375	NM_026721	ENSMUSG00000002105	Slc39a13	1100001L14Rik|AA387663|ZIP-13|ZIP13	solute carrier family 39 (metal ion transporter), member 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-111653693-4	chr8	111653607	111653807	+	783.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358993, intron 1 of 3)	intron (NM_001358993, intron 1 of 3)	10264.0	NM_011742	22640.0	Mm.4184	NM_011742	ENSMUSG00000055835	Zfp1	Fnp-1|Zfp-1|mkr-1	zinc finger protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-46711437-4	chr17	46711343	46711543	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145488)	promoter-TSS (NM_145488)	-20.0	NM_145488	224824.0	Mm.299399	NM_145488	ENSMUSG00000002763	Pex6	AI132582|D130055I09Rik|mKIAA4177	peroxisomal biogenesis factor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-98383366-2	chr12	98383247	98383447	+	788.5	f0_balb.idr|f0_c57.idr	Intergenic	RLTR9A2|LTR|ERVK	114712.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-13760684-3	chr17	13760582	13760782	+	847.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010806, exon 1 of 33)	exon (NM_010806, exon 1 of 33)	141.0	NM_010806	17356.0	Mm.59167	NM_010806	ENSMUSG00000068036	Afdn	5033403D15Rik|AF6|Af-6|Afadin|Gm314|I-afadin|Mllt4|S-afadin	afadin, adherens junction formation factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-136086360-7	chr5	136086271	136086471	+	958.9761960000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039103, intron 1 of 19)	intron (NM_001039103, intron 1 of 19)	2455.0	NM_001039103	54153.0	Mm.290655	NM_133914	ENSMUSG00000004952	Rasa4	AA793972|AW112107|BB079060|CAPRI|GAPL	RAS p21 protein activator 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-115643298-4	chr4	115643236	115643436	+	867.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007823, intron 1 of 11)	intron (NM_007823, intron 1 of 11)	4369.0	NM_007823	13120.0	Mm.1840	NM_007823	ENSMUSG00000028713	Cyp4b1	-	cytochrome P450, family 4, subfamily b, polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-33335457-4	chr5	33335343	33335543	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021500)	promoter-TSS (NM_021500)	-129.0	NM_021500	59003.0	Mm.138617	NM_021500	ENSMUSG00000079562	Maea	1110030D19Rik|EMP|Gid9	macrophage erythroblast attacher	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-113811394-3	chr11	113811291	113811491	+	906.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172800, intron 36 of 44)	intron (NM_172800, intron 36 of 44)	-59576.0	NM_001163346	56699.0	Mm.293378	NM_020006	ENSMUSG00000041598	Cdc42ep4	1500041M20Rik|Borg4|CEP4	CDC42 effector protein (Rho GTPase binding) 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-122820632-5	chr6	122820535	122820735	+	872.64447	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_021899, exon 1 of 11)	5' UTR (NM_021899, exon 1 of 11)	451.0	NM_021899	60611.0	Mm.87142	NM_021899	ENSMUSG00000003154	Foxj2	Fhx	forkhead box J2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-36083599-3	chr17	36083501	36083701	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008199, intron 2 of 5)	CpG-6344	648.0	NM_008199	14963.0	Mm.477808	NM_008199	ENSMUSG00000073406	H2-Bl	H2-B1|H2-Bl-like	histocompatibility 2, blastocyst	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-66792298-3	chr4	66792229	66792429	+	922.8666380000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35222.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25692182-2	chr7	25692082	25692282	+	966.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011577, intron 1 of 6)	B3|SINE|B2	5180.0	NM_011577	21803.0	Mm.248380	NM_011577	ENSMUSG00000002603	Tgfb1	TGF-beta1|TGFbeta1|Tgfb|Tgfb-1	transforming growth factor, beta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132384029-2	chr4	132383929	132384129	+	754.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175306, intron 3 of 13)	intron (NM_175306, intron 3 of 13)	-30343.0	NR_003270	399101.0	Mm.486919	NR_002904	ENSMUSG00000085241	Snhg3	Rnu17d|U17HG	small nucleolar RNA host gene 3	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-64654928-2	chr11	64654832	64655032	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MCa|LINE|L1	-218258.0	NR_028445	654805.0	Mm.436132	NR_028445		F930015N05Rik	-	RIKEN cDNA F930015N05 gene	ncRNA	2.83616590540965	3.78090146462308	3.98639110894528	3.47849761169648	2.96963651904336	3.23085618907091	3.68476864891024	4.40733864057971	0.172803813218863	0.766390328278473	0.998431161219273
Merged-chr11-22848820-3	chr11	22848724	22848924	+	753.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001169114, intron 1 of 1)	intron (NM_001169114, intron 1 of 1)	10911.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70799484-2	chr8	70799384	70799584	+	981.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	1349.0	NR_106099	102466823.0		NR_106099	ENSMUSG00000099031	Mir7240	Gm27487|mmu-mir-7240	microRNA 7240	ncRNA	0.309064467415755	-0.141005444813927	0.513871420831349	-0.149401524073903	-0.154560209367433	-0.139935790908484	-0.144701796055915	0.154240580904931	-2.04512179669589	0.390742468692503	1
Merged-chr17-24078513-2	chr17	24078413	24078613	+	571.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011062, exon 14 of 14)	3' UTR (NM_011062, exon 14 of 14)	-5028.0	NM_027008	69259.0	Mm.28171	NM_027008	ENSMUSG00000016946	Kctd5	2610030N08Rik|mKIAA0176	potassium channel tetramerisation domain containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-94563068-2	chr16	94562970	94563170	+	594.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-7136.0	NM_007890	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-55831301-3	chr12	55831225	55831425	+	932.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	-5041.0	NM_001037756	52592.0	Mm.24761	NM_027867	ENSMUSG00000012076	Brms1l	0710008O11Rik|AI159718|BRMS1|D12Ertd407e	breast cancer metastasis-suppressor 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-162740569-4	chr1	162740475	162740675	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081290)	promoter-TSS (NM_001081290)	-19.0	NM_001081290	226562.0	Mm.245446	NM_001081290	ENSMUSG00000040225	Prrc2c	1810043M20Rik|9630039I18Rik|A630006J20|Bat2d|Bat2d1|Bat2l2|E130112L15Rik|Prrc3|mKIAA1096	proline-rich coiled-coil 2C	protein-coding	0.86260180200765	1.44965498750201	1.09057382564908	1.3594213312057	1.17695925570028	1.46083752365544	1.64886091276695	1.5931462365689	1.08871728106896	0.385024617226829	0.876154616828737
Merged-chr6-37842958-4	chr6	37842880	37843080	+	953.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27831.0	NM_001272064	21848.0	Mm.41063	NM_145076	ENSMUSG00000029833	Trim24	A130082H20Rik|AI447469|D430004I05Rik|TIF1|TIF1-alpha|TIF1alpha|Tif1a	tripartite motif-containing 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-27087460-3	chr8	27087356	27087556	+	845.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054044, intron 1 of 18)	intron (NM_054044, intron 1 of 18)	1615.0	NM_054044	78560.0	Mm.87046	NM_054044	ENSMUSG00000031486	Adgra2	8430414O08Rik|9530074E10Rik|Gpr124|Tem5|mKIAA1531	adhesion G protein-coupled receptor A2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80932383-4	chr10	80932295	80932495	+	960.991699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008655)	TTS (NM_008655)	2304.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123884620-4	chr5	123884529	123884729	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4609.0	NM_175520	243270.0	Mm.33362	NM_175520	ENSMUSG00000049241	Hcar1	Gpr81	hydrocarboxylic acid receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-74494103-2	chr11	74494003	74494203	+	769.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001015046, intron 2 of 24)	intron (NM_001015046, intron 2 of 24)	96055.0	NM_001015046	380711.0	Mm.425690	NM_001015046	ENSMUSG00000038807	Rap1gap2	AU067654|Garnl4|Gm1561|mKIAA1039	RAP1 GTPase activating protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32566892-3	chr2	32566778	32566978	+	788.43335	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153560, intron 10 of 10)	intron (NM_153560, intron 10 of 10)	-3980.0	NM_010073	13481.0	Mm.22001	NM_010073	ENSMUSG00000026810	Dpm2	AW557993|R75484	dolichol-phosphate (beta-D) mannosyltransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-29821434-2	chr11	29821334	29821534	+	604.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_176829)	TTS (NM_176829)	4234.0	NM_176829	216622.0	Mm.443260	NM_176829	ENSMUSG00000078157	4931440F15Rik	Fem1ab	RIKEN cDNA 4931440F15 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36003981-4	chr1	36003867	36004067	+	768.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64433.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19316538-4	chr7	19316426	19316626	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6481.0	NM_001347586	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84928786-4	chr8	84928701	84928901	+	829.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019945, intron 6 of 25)	intron (NM_019945, intron 6 of 25)	8552.0	NM_019945	56527.0	Mm.154614	NM_019945	ENSMUSG00000053693	Mast1	9430008B02Rik|SAST|SAST170	microtubule associated serine/threonine kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-8876359-2	chr10	8876256	8876456	+	754.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 1 of 19)	intron (NM_175155, intron 1 of 19)	9714.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	1.8586947645215	0.96662964313899	0.944850947133528	2.42756835658465	1.11148538065375	2.02984029799074	1.39554108989869	1.51207583839497	-0.478099780799428	0.701695548557437	0.998431161219273
Merged-chr8-70862591-2	chr8	70862491	70862691	+	776.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5583.0	NM_032397	84036.0	Mm.32074	NM_032397	ENSMUSG00000002908	Kcnn1	AI854248|KCa2.1|SK1	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-170967704-4	chr1	170967602	170967802	+	889.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077189, intron 3 of 7)	intron (NM_001077189, intron 3 of 7)	8369.0	NM_010187	14130.0	Mm.425062	NM_010187	ENSMUSG00000026656	Fcgr2b	AI528646|CD32|F630109E10Rik|Fc[g]RII|FcgRII|Fcgr2|Fcgr2a|Fcr-2|Fcr-3|Ly-17|Ly-m20|LyM-1|Lym-1|fcRII	Fc receptor, IgG, low affinity IIb	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-35462620-6	chr2	35462472	35462672	+	870.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1123.0	NM_001145821	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81142355-4	chr15	81142248	81142448	+	985.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001082536, intron 1 of 13)	intron (NM_001082536, intron 1 of 13)	-37301.0	NM_153049	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-132859913-2	chr3	132859813	132860013	+	679.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_102297, intron 1 of 3)	intron (NR_102297, intron 1 of 3)	18683.0	NR_102297	101243624.0	Mm.306256	NR_102297	ENSMUSG00000106230	Gm29811	-	predicted gene, 29811	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-58538493-4	chr12	58538398	58538598	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-269240.0	NM_025809	66864.0	Mm.280563	NM_025809	ENSMUSG00000045930	Clec14a	1200003C23Rik|AI642649	C-type lectin domain family 14, member a	protein-coding	4.79590288811737	5.04597991512853	5.18955283501732	4.32768621985392	5.37959017258413	5.59718065399187	5.93509609334539	3.87560316014697	0.593147554297215	0.142986033423465	0.5904731564462
Merged-chr1-170845899-4	chr1	170845793	170845993	+	998.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081304, intron 4 of 15)	RMER4B|LTR|ERVK	21878.0	NM_001081304	226641.0	Mm.377046	NM_001081304	ENSMUSG00000026663	Atf6	9130025P16Rik|9630036G24|AA789574|Atf6alpha|ESTM49	activating transcription factor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-101815555-3	chr2	101815370	101815570	+	795.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355625, intron 1 of 8)	intron (NM_001355625, intron 1 of 8)	-17763.0	NM_001083810	72446.0	Mm.24138	NM_175181	ENSMUSG00000032841	Prr5l	2600010E01Rik|4833411O04Rik|Protor-2|Protor2	proline rich 5 like	protein-coding	-0.044249341533893	-0.0279552839152523	0.535127622982747	-0.0374094922512283	-0.043231568208081	-0.0267526786480778	0.546244949446689	0.39435205605533	0.793880920677799	0.727524022049787	1
Merged-chr1-132390367-3	chr1	132390251	132390451	+	824.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311107)	promoter-TSS (NM_001311107)	-33.0	NM_001311107	68875.0	Mm.273785	NM_178874	ENSMUSG00000042066	Tmcc2	1110063G11Rik	transmembrane and coiled-coil domains 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-71212524-2	chr2	71212424	71212624	+	787.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347173, intron 1 of 17)	intron (NM_001347173, intron 1 of 17)	578.0	NM_010064	13427.0	Mm.249479	NM_010064	ENSMUSG00000027012	Dync1i2	3110079H08Rik|AW554389|Dncic2	dynein cytoplasmic 1 intermediate chain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-16505108-4	chr1	16505000	16505200	+	886.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347044, intron 4 of 13)	RMER1C|Other|Other	14015.0	NM_001347044	29819.0	Mm.216257	NM_025303	ENSMUSG00000025920	Stau2	-	staufen double-stranded RNA binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-15265699-4	chr4	15265618	15265818	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181401)	promoter-TSS (NM_181401)	-102.0	NM_181401	100201.0	Mm.394111	NM_181401	ENSMUSG00000043252	Tmem64	9630015D15Rik|AI790744|AV300874	transmembrane protein 64	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-111477922-2	chr8	111477822	111478022	+	709.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001170742, intron 17 of 25)	L1ME2|LINE|L1	27722.0	NR_105819									0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-41763824-2	chr5	41763724	41763924	+	816.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_007524, exon 1 of 2)	exon (NM_007524, exon 1 of 2)	396.0	NM_007524	12020.0	Mm.2530	NM_007524	ENSMUSG00000049691	Nkx3-2	Bapx1|NKX3.2|Nkx-3.2	NK3 homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-96334822-4	chr10	96334741	96334941	+	990.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	108634.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-31108905-2	chr7	31108805	31109005	+	996.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110252, intron 5 of 13)	intron (NM_001110252, intron 5 of 13)	2092.0	NM_001276269	15451.0	Mm.19182	NM_008281	ENSMUSG00000001249	Hpn	Hlb320	hepsin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-135474362-4	chr2	135474269	135474469	+	965.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_019677, exon 33 of 33)	3' UTR (NM_019677, exon 33 of 33)	108851.0	NR_015544	320684.0	Mm.421433	NR_015544	ENSMUSG00000085631	9630028H03Rik	-	RIKEN cDNA 9630028H03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-61004407-3	chr19	61004327	61004527	+	712.972229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018869, intron 2 of 15)	intron (NM_018869, intron 2 of 15)	114678.0	NM_018869	14773.0	Mm.279400	NM_018869	ENSMUSG00000003228	Grk5	Gprk5	G protein-coupled receptor kinase 5	protein-coding	0.707853922019506	0.758356967230464	1.31274117546706	1.26938868522918	1.20584755954065	2.05062174097023	1.58539258933056	0.731800532401559	1.64106369340573	0.249566702010075	0.747873365654632
Merged-chr17-71246198-2	chr17	71246078	71246278	+	585.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357791, intron 18 of 19)	intron (NM_001357791, intron 18 of 19)	41524.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-13342825-3	chr1	13342746	13342946	+	595.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008678, intron 1 of 22)	intron (NM_008678, intron 1 of 22)	29583.0	NM_001302702	17978.0	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-14295609-4	chr2	14295548	14295748	+	850.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008625, intron 15 of 29)	intron (NM_008625, intron 15 of 29)	34645.0	NR_030609	100124488.0		NR_030609	ENSMUSG00000077897	Mir511	Mirn511|mir-511|mmu-mir-511	microRNA 511	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-73548845-3	chr18	73548759	73548959	+	595.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-23846.0	NM_001039214	240396.0	Mm.24131	NM_001039214	ENSMUSG00000037253	Mex3c	A130001D14Rik|BC035207|BM-013|Rkhd2	mex3 RNA binding family member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-121008403-4	chr2	121008296	121008496	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010761)	promoter-TSS (NM_010761)	-12.0	NM_010761	17151.0	Mm.7838	NM_010761	ENSMUSG00000023572	Ccndbp1	AU022347|DIP1|GCIP|Maid|SECC-8|SSEC-8	cyclin D-type binding-protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-54819697-4	chr13	54819683	54819883	+	906.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30378.0	NM_028841	74257.0	Mm.32883	NM_028841	ENSMUSG00000025875	Tspan17	2210021G21Rik|AI047581|Fbxo23|Tm4sf17	tetraspanin 17	protein-coding	2.15289734594936	0.941830540217732	0.919847910474419	0.902343563916355	1.66280429557759	2.22296409354428	1.1733909557255	2.06305988713276	1.31303778453509	0.318457068901884	0.821951596143819
Merged-chr13-51737146-3	chr13	51737043	51737243	+	574.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001281880, intron 2 of 16)	MIRb|SINE|MIR	56604.0	NM_001281880	20354.0	Mm.33903	NM_013660	ENSMUSG00000021451	Sema4d	CD100|Semacl2|Semaj|Semcl2|coll-4	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-103102180-4	chr11	103102061	103102261	+	910.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_152813)	promoter-TSS (NM_152813)	473.0	NM_025988	67131.0	Mm.390367	NM_025988	ENSMUSG00000056938	Acbd4	2010009P05Rik|2010015A21Rik|AI849317	acyl-Coenzyme A binding domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-24717689-1	chr19	24717589	24717789	+	547.0	f1_c57bl6.idr	intron (NM_175013, intron 9 of 10)	RMER1A|Other|Other	43681.0	NM_183160	226040.0	Mm.391170	NM_183160	ENSMUSG00000048572	Tmem252	E030010A14Rik	transmembrane protein 252	protein-coding	-1.26331444426203	-1.36355630584805	-1.52272189923659	-1.53053467210616	-1.54245435775007	-1.51114959732935	-1.52056877479163	-1.52913618949789	-1.90260483685633	0.584008459975193	1
Merged-chr11-67100293-2	chr11	67100193	67100393	+	590.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_105888)	TTS (NR_105888)	489.0	NR_105888	102466766.0		NR_105888	ENSMUSG00000098855	Mir6923	Gm27312|mmu-mir-6923	microRNA 6923	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46850711-3	chr8	46850617	46850817	+	721.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	110972.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-79961243-3	chr10	79961059	79961259	+	897.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175450, intron 2 of 9)	intron (NM_175450, intron 2 of 9)	1007.0	NM_175450	216156.0	Mm.35828	NM_175450	ENSMUSG00000035754	Wdr18	2310012I10Rik|AU044733|AW122032	WD repeat domain 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91140506-2	chr2	91140406	91140606	+	964.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177719, intron 33 of 34)	intron (NM_001177719, intron 33 of 34)	22362.0	NM_008653	17868.0	Mm.10728	NM_008653	ENSMUSG00000002100	Mybpc3	-	myosin binding protein C, cardiac	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-79177323-4	chr3	79177190	79177390	+	963.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31415.0	NM_001099624	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	2.81225573422627	3.8033046343509	2.8467901554458	2.38388046585394	2.92128716520158	3.27167906993113	2.62141416806973	2.39660114702284	-0.409818470722544	0.561100718687042	0.960350977191929
Merged-chr19-21565647-2	chr19	21565547	21565747	+	591.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	87144.0	NM_025423	66206.0	Mm.272430	NM_025423	ENSMUSG00000035171	1110059E24Rik	-	RIKEN cDNA 1110059E24 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-50759577-1	chr16	50759477	50759677	+	566.0	f1_c57bl6.idr	Intergenic	L1_Mus1|LINE|L1	-23832.0	NR_131006	78639.0	Mm.160109	NR_131005	ENSMUSG00000092276	1700116B05Rik	-	RIKEN cDNA 1700116B05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80865044-4	chr7	80864983	80865183	+	767.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009553, intron 2 of 2)	intron (NM_009553, intron 2 of 2)	2975.0	NM_009553	22691.0	Mm.358645	NM_009553	ENSMUSG00000038797	Zscan2	Zfp-29|Zfp29	zinc finger and SCAN domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-22713200-3	chr8	22713121	22713321	+	660.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6638.0	NM_001159774	16150.0	Mm.277886	NM_010546	ENSMUSG00000031537	Ikbkb	AI132552|IKK-2|IKK-beta|IKK2|IKK[b]|IKKbeta	inhibitor of kappaB kinase beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-94962027-2	chr6	94961927	94962127	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18193.0	NR_040761	78773.0	Mm.67065	NR_040761	ENSMUSG00000108187	4930511E03Rik	-	RIKEN cDNA 4930511E03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-34472746-4	chr1	34472630	34472830	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011206, intron 12 of 14)	intron (NM_011206, intron 12 of 14)	12984.0	NM_011206	19253.0	Mm.361	NM_011206	ENSMUSG00000026126	Ptpn18	FLP1|HSCF|PTP-HSCF|PTP-K1|Ptpk1	protein tyrosine phosphatase, non-receptor type 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-119090041-1	chr3	119089941	119090141	+	541.0	f1_balb.idr	intron (NM_170778, intron 14 of 22)	intron (NM_170778, intron 14 of 22)	527861.0	NM_170778	99586.0	Mm.27907	NM_170778	ENSMUSG00000033308	Dpyd	AI315208|DHPDHase|DPD|E330028L06Rik	dihydropyrimidine dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-58017553-3	chr16	58017445	58017645	+	915.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-262808.0	NM_007739	12837.0	Mm.130388	NM_007739	ENSMUSG00000068196	Col8a1	Col8a-1	collagen, type VIII, alpha 1	protein-coding	1.04026737979646	1.1933574212092	1.70041236558826	1.10874003629325	2.40594894698885	3.11469661938225	3.21931248756994	3.44913800931064	4.85804314246452	5.04044910044171e-05	0.00175121549151833
Merged-chr11-77465181-2	chr11	77465081	77465281	+	738.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_139129, intron 1 of 8)	intron (NM_139129, intron 1 of 8)	1268.0	NM_139130	216961.0	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96567298-4	chr3	96567198	96567398	+	946.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040409)	promoter-TSS (NR_040409)	-497.0	NR_040409	100038464.0	Mm.475126	NR_040409	ENSMUSG00000074398	Gm15441	-	predicted gene 15441	ncRNA	3.04819489992774	3.58104751524492	1.90833617118357	3.43791809426451	3.07399340887929	3.44662281268028	2.15986588605892	3.75453959039838	0.162527648216811	0.820079883321725	0.998431161219273
Merged-chr10-32175270-2	chr10	32175170	32175370	+	961.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025286, intron 3 of 3)	intron (NM_001025286, intron 3 of 3)	-565545.0	NM_001146349	268291.0	Mm.295212	NM_001146349	ENSMUSG00000063760	Rnf217	AU016819|Ibrdc1	ring finger protein 217	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-12701920-2	chr19	12701820	12702020	+	572.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029550, intron 1 of 5)	Lx5|LINE|L1	6130.0	NM_029550	64697.0	Mm.218561	NM_029550	ENSMUSG00000024694	Keg1	0610008P16Rik|AI316519|GS4059	kidney expressed gene 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-23423908-4	chr13	23423820	23424020	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013924)	promoter-TSS (NM_013924)	-54.0	NM_013924	30946.0	Mm.292094	NM_013924	ENSMUSG00000036376	Abt1	-	activator of basal transcription 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-155059674-4	chr1	155059564	155059764	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23600.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-88198448-2	chr8	88198348	88198548	+	924.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164497)	promoter-TSS (NM_001164497)	-765.0	NM_001164499	214627.0	Mm.491211	NM_001164497	ENSMUSG00000036779	Papd5	5730445M16Rik|5830428A09	PAP associated domain containing 5	protein-coding	-2.18361151404719	-2.02201993626881	-2.16403530460334	-2.1710062446989	-2.18164157430194	-2.15370992785044	-2.16211418110791	-2.16975844975469	-0.683654500252594	0.846597994014493	1
Merged-chr1-181846006-4	chr1	181845920	181846120	+	997.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3619.0	NM_133815	98386.0	Mm.4538	NM_133815	ENSMUSG00000004880	Lbr	AI505894|ic	lamin B receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-21079931-4	chr11	21079830	21080030	+	985.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11394.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-13008174-1	chr18	13008074	13008274	+	830.0	f0_balb.idr	intron (NM_153087, intron 1 of 2)	intron (NM_153087, intron 1 of 2)	1184.0	NM_153087	225192.0	Mm.207073	NM_153087	ENSMUSG00000037346	Hrh4	AXOR35|BG26|GPCR105|GPRv53|H4|H4R|HH4R	histamine receptor H4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-83091543-3	chr8	83091447	83091647	+	665.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_177378)	TTS (NM_177378)	-73805.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	1.73671183750044	1.76249163445424	2.1460532297746	1.2509912505929	2.50642055596971	2.10384522956459	2.38139381389581	2.30722628203962	1.51634954931376	0.112643732192542	0.525602605203311
Merged-chr16-37869789-4	chr16	37869653	37869853	+	995.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177093, intron 1 of 3)	intron (NM_177093, intron 1 of 3)	1353.0	NM_177093	320184.0	Mm.390882	NM_177093	ENSMUSG00000034158	Lrrc58	1810012N18Rik|C330018J07Rik	leucine rich repeat containing 58	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84907743-4	chr8	84907681	84907881	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010062)	promoter-TSS (NM_010062)	-843.0	NM_010062	13423.0	Mm.350831	NM_010062	ENSMUSG00000003812	Dnase2a	Dnase2	deoxyribonuclease II alpha	protein-coding	-2.18292257394068	-2.15545247547656	-2.03304972317742	-2.17058342868585	-2.18099422382073	-2.1536522739386	-2.16187909550322	-2.16936197735154	-0.683654500252594	0.846597994014493	1
Merged-chr3-105060206-2	chr3	105060106	105060306	+	630.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6638.0	NM_029228	75269.0	Mm.307994	NM_029228	ENSMUSG00000051788	4930564D02Rik	-	RIKEN cDNA 4930564D02 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35822404-2	chr17	35822304	35822504	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008027)	promoter-TSS (NM_008027)	691.0	NM_133662	15937.0	Mm.25613	NM_133662	ENSMUSG00000003541	Ier3	AI663993|IEX-1|cI-3|gly96	immediate early response 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-29475216-2	chr18	29475116	29475316	+	709.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045391, intron 1 of 7)	RMER17B2|LTR|ERVK	21200.0	NR_045391	78058.0	Mm.416952	NR_045391		4930578E11Rik	-	RIKEN cDNA 4930578E11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-57731554-2	chr3	57731454	57731654	+	610.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4503.0	NM_011883	24017.0	Mm.274360	NM_011883	ENSMUSG00000036503	Rnf13	2010001H16Rik|Rzf	ring finger protein 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25436377-4	chr7	25436276	25436476	+	986.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015569, intron 4 of 6)	intron (NR_015569, intron 4 of 6)	-23490.0	NM_153576	232983.0	Mm.10545	NM_153576	ENSMUSG00000060188	Cxcl17	VCC-1|Vcc1	chemokine (C-X-C motif) ligand 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-22536699-2	chr5	22536599	22536799	+	632.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011959, intron 4 of 13)	intron (NM_011959, intron 4 of 13)	-7669.0	NR_004442	100042049.0	Mm.21724	NR_004442		Gm15421	-	ribosomal protein L22 like 1 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-123990023-3	chr14	123989894	123990094	+	933.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045479, intron 1 of 3)	intron (NR_045479, intron 1 of 3)	2359.0	NR_045479	69393.0	Mm.491348	NR_045479	ENSMUSG00000099994	1700024B18Rik	-	RIKEN cDNA 1700024B18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-137624978-2	chr5	137624878	137625078	+	698.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027708)	promoter-TSS (NM_027708)	100.0	NM_027708	71176.0	Mm.474695	NM_027708	ENSMUSG00000089984	Fbxo24	4933422D21Rik|Fbx24	F-box protein 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-143051508-2	chr7	143051408	143051608	+	576.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_110355, intron 1 of 4)	intron (NR_110355, intron 1 of 4)	-1242.0	NM_133655	12520.0	Mm.806	NM_133655	ENSMUSG00000037706	Cd81	Tapa-1|Tapa1|Tspan28	CD81 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-127151010-4	chr6	127150883	127151083	+	836.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009829)	promoter-TSS (NM_009829)	65.0	NM_009829	12444.0	Mm.333406	NM_009829	ENSMUSG00000000184	Ccnd2	2600016F06Rik|AI256817|BF642806|C86853|Vin-1|Vin1|cD2	cyclin D2	protein-coding	1.30271711377122	1.00517966218985	1.94542079228576	1.88480252691368	1.7951403913219	1.00974104812387	1.22600660767367	2.31117834685137	0.304855282502784	0.804315970874917	0.998431161219273
Merged-chr7-135655343-4	chr7	135655236	135655436	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316681, intron 3 of 17)	intron (NM_001316681, intron 3 of 17)	-3022.0	NR_015548	67765.0	Mm.445272	NR_015548	ENSMUSG00000097471	5830432E09Rik	-	RIKEN cDNA 5830432E09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44051415-3	chr7	44051305	44051505	+	877.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020268)	promoter-TSS (NM_020268)	-885.0	NM_020268	16619.0	Mm.445911	NM_020268	ENSMUSG00000063177	Klk1b27	Gk27|Klk21l|Klk27|mGK-27	kallikrein 1-related peptidase b27	protein-coding	2.33247391400086	3.12709749362369	2.88080389750172	1.57223125389797	4.54351839342789	4.03782199820505	4.18821442916568	4.11574313142147	2.54202282077198	1.94171195538082e-05	0.000790610634863996
Merged-chr8-67044318-2	chr8	67044218	67044418	+	640.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4A|LINE|L1	184101.0	NM_001163564	234344.0	Mm.334561	NM_001163564	ENSMUSG00000014907	Naf1	Gm174	nuclear assembly factor 1 ribonucleoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-51692079-4	chr12	51691977	51692177	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_052973)	promoter-TSS (NM_052973)	-163.0	NM_052973	94186.0	Mm.65979	NM_052973	ENSMUSG00000020954	Strn3	Gs2na|SG2NA	striatin, calmodulin binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-44236803-2	chr4	44236703	44236903	+	628.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15536.0	NR_039565	100628618.0		NR_039565	ENSMUSG00000092677	Mir5106	mir-5106|mmu-mir-5106|mu-mir-5106	microRNA 5106	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5433159-4	chr19	5433040	5433240	+	893.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7996.0	NM_001256515	107242.0	Mm.329658	NM_134149	ENSMUSG00000047423	AI837181	Bles03|N28173	expressed sequence AI837181	protein-coding	3.77781889651841	2.77313342740893	3.90430546978963	3.74047199604916	3.80716741358558	2.79488156134082	3.41757796104283	3.75876231502575	-0.168765793677786	0.764649990626612	0.998431161219273
Merged-chr15-34469897-4	chr15	34469786	34469986	+	851.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173421, intron 1 of 2)	intron (NM_173421, intron 1 of 2)	16574.0	NM_173421	239368.0	Mm.211977	NM_173421	ENSMUSG00000044726	Erich5	-	glutamate rich 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-26076332-4	chr8	26076246	26076446	+	967.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207659, intron 6 of 21)	intron (NM_207659, intron 6 of 21)	-6263.0	NR_110583	76604.0	Mm.437190	NR_110583	ENSMUSG00000085437	1700047A11Rik	4930554C15Rik	RIKEN cDNA 1700047A11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-21449881-4	chr17	21449780	21449980	+	967.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001308323)	promoter-TSS (NM_001308323)	-494.0	NM_001308323	22709.0	Mm.293030	NM_009558	ENSMUSG00000023892	Zfp51	Zfp-51|zfec12	zinc finger protein 51	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-48788525-4	chr7	48788426	48788626	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028031)	promoter-TSS (NM_028031)	-477.0	NM_028031	243983.0	Mm.279116	NM_028031	ENSMUSG00000030471	Zdhhc13	2410004E01Rik|C530010M18|HIP3RP|Hip14l|kojak|skc4	zinc finger, DHHC domain containing 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-98776469-4	chr10	98776369	98776569	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-138173.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-119403650-2	chr9	119403550	119403750	+	772.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007397, intron 1 of 9)	intron (NM_007397, intron 1 of 9)	1472.0	NM_001313757	11481.0	Mm.8940	NM_007397	ENSMUSG00000061393	Acvr2b	4930516B21Rik|ActRIIB	activin receptor IIB	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-50388940-4	chr17	50388851	50389051	+	949.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-95331.0	NM_001277863	13164.0	Mm.280641	NM_010021	ENSMUSG00000010592	Dazl	Daz-like|Dazh|Dazl1|Dazla|Tpx-2|Tpx2	deleted in azoospermia-like	protein-coding	5.37102787044007	5.21688474283414	5.16411144918063	5.51714934847434	3.97559866045914	3.9214964839216	3.35292550699277	4.96021658136487	-1.38070364875617	0.000440108218041727	0.0100643298603519
Merged-chr17-27847184-1	chr17	27847084	27847284	+	656.0	f1_c57bl6.idr	intron (NM_011432, intron 4 of 5)	intron (NM_011432, intron 4 of 5)	7097.0	NM_011432	20630.0	Mm.103949	NM_011432	ENSMUSG00000024217	Snrpc	Snrp1c|U1-C|U1C	U1 small nuclear ribonucleoprotein C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-73492423-3	chr15	73492316	73492516	+	968.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20144.0	NR_152151	105841.0	Mm.322557	NM_001081066	ENSMUSG00000036661	Dennd3	AI447457|E030003N15Rik	DENN/MADD domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52569346-2	chr13	52569246	52569446	+	648.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_046069)	TTS (NR_046069)	3879.0	NR_046069	100040572.0	Mm.278873	NR_046069		Gm2848	-	predicted gene 2848	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-37671323-4	chr13	37671226	37671426	+	840.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	-154712.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-118409296-4	chr4	118409191	118409391	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020000)	promoter-TSS (NM_020000)	-28.0	NM_198170	230676.0	Mm.415218	NM_198170	ENSMUSG00000033253	Szt2	6430407N22|TIGR	seizure threshold 2	protein-coding	5.51598310611798	5.21673469203946	6.30278628550841	6.01466341040759	5.12960000096072	5.63442954935719	6.05603001904537	5.78397376575125	-0.158349688558414	0.600652487444971	0.972964840983327
Merged-chr1-105987262-4	chr1	105987157	105987357	+	923.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151625, intron 2 of 2)	B3A|SINE|B2	3025.0	NR_151625	635504.0	Mm.359717	NR_151625		Gm7160	EG635504	predicted gene 7160	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-88465375-4	chr6	88465272	88465472	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019685)	promoter-TSS (NM_019685)	-37.0	NM_019685	56505.0	Mm.42195	NM_019685	ENSMUSG00000030079	Ruvbl1	2510009G06Rik|Pontin52|Tip49a	RuvB-like protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-102692495-2	chr15	102692395	102692595	+	830.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20629.0	NR_030460	751542.0		NR_030460	ENSMUSG00000076009	Mir688	Mirn688|mmu-mir-688	microRNA 688	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-95279662-4	chr10	95279558	95279758	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001330138, intron 2 of 2)	intron (NM_001330138, intron 2 of 2)	44051.0	NM_001330138	12905.0	Mm.473739	NM_009950	ENSMUSG00000045867	Cradd	RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-40746461-4	chr3	40746358	40746558	+	959.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011020, intron 1 of 18)	intron (NM_011020, intron 1 of 18)	845.0	NM_011020	18415.0	Mm.39330	NM_011020	ENSMUSG00000025757	Hspa4l	94kDa|AI461691|APG-1|Osp94	heat shock protein 4 like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-120882376-1	chr14	120882276	120882476	+	789.0	f1_balb.idr	Intergenic	Intergenic	-28818.0	NM_023579	70572.0	Mm.221452	NM_023579	ENSMUSG00000030662	Ipo5	1110011C18Rik|5730478E03Rik|AA409333|C76941|IMB3|Kpnb3|Ranbp5|imp5	importin 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-126840077-2	chr4	126839977	126840177	+	619.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001035525, intron 13 of 23)	intron (NM_001035525, intron 13 of 23)	86307.0	NM_001035526	100317.0	Mm.206206	NM_133886	ENSMUSG00000028830	AU040320	A730047D20Rik|AAVR|Kiaa0319l	expressed sequence AU040320	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-52056350-3	chr11	52056238	52056438	+	668.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166654, intron 13 of 13)	RMER19B|LTR|ERVK	-42486.0	NM_019411	19052.0	Mm.260288	NM_019411	ENSMUSG00000020349	Ppp2ca	PP2A|R75353	protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-99033201-4	chr4	99033097	99033297	+	888.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013913, intron 2 of 6)	intron (NM_013913, intron 2 of 6)	2243.0	NM_013913	30924.0	Mm.28341	NM_013913	ENSMUSG00000028553	Angptl3	hypl	angiopoietin-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-105588812-2	chr13	105588712	105588912	+	693.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1VL1|LINE|L1	145119.0	NM_008308	15550.0	Mm.4716	NM_008308	ENSMUSG00000021721	Htr1a	Gpcr18	5-hydroxytryptamine (serotonin) receptor 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-94370962-4	chr11	94370879	94371079	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029600, intron 8 of 30)	intron (NM_029600, intron 8 of 30)	21997.0	NM_029600	76408.0	Mm.23942	NM_029600	ENSMUSG00000020865	Abcc3	1700019L09Rik|ABC31|MLP2|MOAT-D|MRP3	ATP-binding cassette, sub-family C (CFTR/MRP), member 3	protein-coding	6.4274580683509	6.56610093500631	6.48915483908995	6.54515118225037	6.72517917780482	6.58678446186802	6.26266593153353	6.70714835298108	0.0855928785718741	0.660235645572786	0.990105900622734
Merged-chr7-135490768-3	chr7	135490659	135490859	+	788.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37895.0	NM_178669	212070.0	Mm.39721	NM_178669	ENSMUSG00000050866	Clrn3	AI649392|Tmem12	clarin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-155092549-2	chr1	155092449	155092649	+	609.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7087.0	NM_010500	15939.0	Mm.12246	NM_010500	ENSMUSG00000056708	Ier5	-	immediate early response 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-39150454-2	chr15	39150354	39150554	+	710.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37580.0	NM_198606	223499.0	Mm.321937	NM_198606	ENSMUSG00000022300	Dcaf13	Gm83|Wdsof1	DDB1 and CUL4 associated factor 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-36934366-2	chr8	36934266	36934466	+	618.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001194940, intron 2 of 17)	ORR1C2|LTR|ERVL-MaLR	18076.0	NM_001194940	50768.0	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	-1.36015291771705	-1.32842431658676	-1.33874579108173	-1.34722415754512	-1.35969949349639	-1.32618761000664	-1.33640923549635	-0.791042329471244	2.42373733289067	0.484013421080845	1
Merged-chr3-27982728-4	chr3	27982596	27982796	+	964.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164056, intron 2 of 26)	intron (NM_001164056, intron 2 of 26)	-1475.0	NM_008875	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-95572778-4	chr9	95572669	95572869	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12952.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116422777-2	chr11	116422677	116422877	+	612.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	-9745.0	NM_027258	217340.0	Mm.426344	NM_027258	ENSMUSG00000052949	Rnf157	2610036E23Rik|A130073L17Rik|mKIAA1917	ring finger protein 157	protein-coding	0.708288854135783	0.268473951975929	0.257633981630839	0.249118535804561	1.03962880547969	1.5409686584783	0.260043506756615	0.250616085686903	2.6349713437421	0.174816524777679	0.64338916082288
Merged-chr3-115936944-2	chr3	115936848	115937048	+	868.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-42954.0	NR_130332	100316705.0		NR_130332	ENSMUSG00000089261	Mir669n	mmu-mir-669n	microRNA 669n	ncRNA	-0.995197564771313	-0.977885147025373	-0.989613723575026	-0.991717036974319	-0.994680488069244	-0.624034154867037	-0.98704392539263	-0.560789139360922	2.87912915139887	0.353145955938309	1
Merged-chr15-27801639-2	chr15	27801539	27801739	+	953.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081302, intron 34 of 56)	intron (NM_001081302, intron 34 of 56)	-120097.0	NM_001242423	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-42350895-6	chr6	42350784	42350984	+	990.8148189999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289618, intron 2 of 9)	intron (NM_001289618, intron 2 of 9)	1056.0	NM_001289618	22793.0	Mm.282303	NM_011777	ENSMUSG00000029860	Zyx	9530098H06Rik|R75157	zyxin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-13983045-4	chr10	13982946	13983146	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358782, intron 1 of 9)	intron (NM_001358782, intron 1 of 9)	16667.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-47008447-4	chr7	47008333	47008533	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175318)	promoter-TSS (NM_175318)	-19.0	NM_175318	101685.0	Mm.155687	NM_175318	ENSMUSG00000049516	Spty2d1	5830435K17Rik|AI852426|P16H6	SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139346775-2	chr5	139346675	139346875	+	589.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1609.0	NM_197980	68033.0	Mm.261064	NM_197980	ENSMUSG00000045438	Cox19	1810074D02Rik|2810437L13Rik	cytochrome c oxidase assembly protein 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-85506928-4	chr13	85506881	85507081	+	975.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-217495.0	NM_145452	218397.0	Mm.259653	NM_145452	ENSMUSG00000021549	Rasa1	Gap|RasGAP|Rasa	RAS p21 protein activator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101237687-2	chr15	101237588	101237788	+	591.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-12502.0	NR_045328	380977.0	Mm.399924	NR_045326	ENSMUSG00000097915	A330009N23Rik	-	RIKEN cDNA A330009N23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88482501-2	chr3	88482401	88482601	+	745.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_019390)	TTS (NM_019390)	10811.0	NM_019390	16905.0	Mm.243014	NM_019390	ENSMUSG00000028063	Lmna	Dhe	lamin A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-8837666-4	chr4	8837560	8837760	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355382, intron 14 of 36)	intron (NM_001355382, intron 14 of 36)	86336.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-84977421-2	chr4	84977321	84977521	+	691.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175275, intron 7 of 25)	intron (NM_175275, intron 7 of 25)	93112.0	NM_177385	338349.0	Mm.440562	NM_175275	ENSMUSG00000038070	Cntln	AI448092|B430108F07Rik|D530005L17Rik	centlein, centrosomal protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-37318986-2	chr15	37318886	37319086	+	784.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026496, intron 8 of 15)	intron (NM_026496, intron 8 of 15)	-85827.0	NR_155442	105245924.0	Mm.391911	NR_155441	ENSMUSG00000089804	Gm16136	-	predicted gene 16136	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-21571371-4	chr19	21571230	21571430	+	913.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	81461.0	NM_025423	66206.0	Mm.272430	NM_025423	ENSMUSG00000035171	1110059E24Rik	-	RIKEN cDNA 1110059E24 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-95605519-3	chr16	95605430	95605630	+	819.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18937.0	NM_001302152	13876.0	Mm.164531	NM_133659	ENSMUSG00000040732	Erg	D030036I24Rik	ETS transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-32387899-4	chr19	32387755	32387955	+	922.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001362423, exon 1 of 10)	5' UTR (NM_001362423, exon 1 of 10)	194.0	NM_001362423	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0.436982270931373	0.472178099999344	-0.00111708171621097	0.150541696310799	-0.0100264311021721	0.00478138465195127	0.440244020293844	-0.0041711996884935	-1.26494774699609	0.555815148808697	1
Merged-chr10-87927432-2	chr10	87927332	87927532	+	638.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111274, intron 4 of 4)	intron (NM_001111274, intron 4 of 4)	-39239.0	NR_000040	22172.0	Mm.391420	NR_000040		Tyms-ps	-	thymidylate synthase, pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36296667-4	chr18	36296568	36296768	+	991.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3433.0	NM_001267796	109169.0	Mm.426423	NM_001267796	ENSMUSG00000110185	Igip	6330403M23Rik	IgA inducing protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-51398177-4	chr17	51398074	51398274	+	917.2708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_037268, intron 3 of 4)	intron (NR_037268, intron 3 of 4)	50095.0	NR_046166	328837.0	Mm.236143	NR_046166		C330011F03Rik	C330011F03	RIKEN cDNA C330011F03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76623137-2	chr15	76623037	76623237	+	686.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025842, intron 7 of 9)	intron (NM_025842, intron 7 of 9)	2947.0	NM_025842	66914.0	Mm.30028	NM_025842	ENSMUSG00000115987	Vps28	1110014J03Rik|CIIA|D730005C08Rik	vacuolar protein sorting 28	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-28685604-3	chr19	28685479	28685679	+	878.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045330, intron 1 of 4)	intron (NR_045330, intron 1 of 4)	-5502.0	NM_175459	226075.0	Mm.223508	NM_175459	ENSMUSG00000052942	Glis3	4833409N03Rik|E330013K21Rik	GLIS family zinc finger 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-136511812-4	chr4	136511704	136511904	+	824.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024452, intron 1 of 4)	intron (NM_024452, intron 1 of 4)	42043.0	NM_024452	269593.0	Mm.485824	NM_024452	ENSMUSG00000001089	Luzp1	2700072H04Rik|AI266952|Luzp|mFLJ00226	leucine zipper protein 1	protein-coding	2.15149352095276	1.29216979156006	2.81578244004092	2.99987397627572	2.53616650453767	2.32180336285904	1.26446951536644	1.70046314408712	-0.910282282903183	0.371205558165254	0.863911489096448
Merged-chr10-40500058-4	chr10	40499961	40500161	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70301.0	NM_027572	70840.0	Mm.332570	NM_027572	ENSMUSG00000019834	Slc22a16	4921504E14Rik|CT2|FLIPT2|OCT6|OKB1	solute carrier family 22 (organic cation transporter), member 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5941044-4	chr17	5940901	5941101	+	925.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113353)	promoter-TSS (NM_001113353)	-279.0	NM_001113353	20975.0	Mm.236068	NM_011523	ENSMUSG00000023805	Synj2	AI481647|SJ2|mKIAA0348	synaptojanin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129019044-4	chr4	129018945	129019145	+	996.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25821.0	NM_001033966	11637.0	Mm.29460	NM_016895	ENSMUSG00000028792	Ak2	Ak-2|D4Ertd220e	adenylate kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-3164650-3	chr11	3164628	3164828	+	1000.0	f0_balb.idr|f1_balb.idr	intron (NM_030207, intron 8 of 32)	intron (NM_030207, intron 8 of 32)	28735.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-82102395-2	chr11	82102295	82102495	+	640.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011331, intron 1 of 2)	intron (NM_011331, intron 1 of 2)	550.0	NM_011331	20293.0	Mm.867	NM_011331	ENSMUSG00000035352	Ccl12	MCP-5|Scya12	chemokine (C-C motif) ligand 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-51333409-1	chr19	51333309	51333509	+	632.0	f1_balb.idr	Intergenic	Lx5c|LINE|L1	-654763.0	NM_001290356	58178.0	Mm.313672	NM_021377	ENSMUSG00000043531	Sorcs1	Sorcs|mSorCS	sortilin-related VPS10 domain containing receptor 1	protein-coding	-1.84303373260285	-1.81303463126392	-1.82210660711932	-1.82955859819738	-1.84092785115721	-1.81106869625141	-1.8200529106377	-1.54273750312762	1.50114612804783	0.670102668014672	1
Merged-chr7-81290726-4	chr7	81290609	81290809	+	953.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008803, intron 3 of 21)	MER105|DNA|DNA	54525.0	NM_009092	20068.0	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-136878834-4	chr4	136878718	136878918	+	808.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	7359.0	NM_009777	12260.0	Mm.2570	NM_009777	ENSMUSG00000036905	C1qb	-	complement component 1, q subcomponent, beta polypeptide	protein-coding	2.26105465916687	1.49070657385532	3.38708382180554	1.89610602544145	2.87780762668021	2.42534277873416	3.64400349231821	2.85443155640582	0.99666706275211	0.235577908969398	0.731942609741049
Merged-chr1-102458145-2	chr1	102458045	102458245	+	877.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1A|DNA|hAT-Charlie	1302377.0	NR_037989	100504525.0	Mm.87065	NR_037989	ENSMUSG00000100684	Gm20268	-	predicted gene, 20268	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-87181100-4	chr1	87180995	87181195	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2219.0	NM_027084	69453.0	Mm.84618	NM_027084	ENSMUSG00000036480	Prss56	1700027L20Rik	protease, serine 56	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-54777707-2	chr14	54777609	54777809	+	682.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016972, intron 1 of 10)	intron (NM_016972, intron 1 of 10)	4177.0	NM_016972	50934.0	Mm.276831	NM_016972	ENSMUSG00000022180	Slc7a8	AA408822|LAT2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	protein-coding	1.80914837723866	2.35566121315721	1.96768689435591	1.097103414868	1.44084076454609	2.05568481204895	1.9838402794005	1.32310288318359	-0.416326041108364	0.704089133560737	0.998431161219273
Merged-chr4-40830119-3	chr4	40829971	40830171	+	846.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022305, intron 1 of 5)	intron (NM_022305, intron 1 of 5)	20067.0	NR_039584	100628614.0		NR_039584	ENSMUSG00000096377	Mir5123	mmu-mir-5123|mu-mir-5123	microRNA 5123	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-107984796-4	chr5	107984679	107984879	+	948.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026062, intron 1 of 4)	ID_B1|SINE|B4	2298.0	NM_026062	67266.0	Mm.277897	NM_026062	ENSMUSG00000029270	Fam69a	2900024C23Rik|AI315274	family with sequence similarity 69, member A	protein-coding	3.98188909969085	4.54780892403761	4.12485374100771	4.60262698092983	4.49937741351854	3.53201739247721	3.70656618707604	4.66247258335963	-0.177869554089832	0.692228673118657	0.997361254512567
Merged-chr9-69656229-4	chr9	69656148	69656348	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	104692.0	NM_022378	64290.0	Mm.440890	NM_022378	ENSMUSG00000059246	Foxb1	C43|Fkh5|Foxb1a|Foxb1b|Hfh-e5.1|Mf3|Twh	forkhead box B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150211910-2	chr4	150211810	150212010	+	839.8000490000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	-10775.0	NM_009802	12353.0	Mm.232523	NM_009802	ENSMUSG00000028972	Car6	Ca6|DOC1	carbonic anhydrase 6	protein-coding	-1.14149542847138	-0.33100028091332	-1.12720875772362	-1.13728867753953	-1.14086750656251	-1.11193125150289	-1.12436624874263	-1.1356767669541	-2.98824766641611	0.369648585513947	1
Merged-chr17-17625302-4	chr17	17625169	17625369	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172827)	promoter-TSS (NM_172827)	-780.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	5.56639627821127	5.88277779851814	6.14160566505097	5.37070910344373	5.74310160900376	5.86761942912063	6.19716190888473	5.55776565899008	0.102421174936272	0.702125856482526	0.998431161219273
Merged-chr13-92670909-2	chr13	92670809	92671009	+	699.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172588, intron 2 of 11)	B1_Mus1|SINE|Alu	59771.0	NM_172588	218442.0	Mm.297970	NM_172588	ENSMUSG00000021703	Serinc5	A130038L21Rik|AIGP3|C86123|TPO1	serine incorporator 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-87141274-4	chr14	87141163	87141363	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019670)	promoter-TSS (NM_019670)	-39.0	NM_019670	56419.0	Mm.440585	NM_019670	ENSMUSG00000022021	Diaph3	4930417P13Rik|Dia2|Diap3|Drf3|p134MDia2	diaphanous related formin 3	protein-coding	3.61280735555718	4.32816171414664	4.46065377317593	4.29537632069852	4.11993505896267	3.53379217607187	4.9073167732604	4.50337016317293	0.204778281651312	0.651688254596928	0.986328611385157
Merged-chr8-84908672-4	chr8	84908575	84908775	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010062)	promoter-TSS (NM_010062)	51.0	NM_010062	13423.0	Mm.350831	NM_010062	ENSMUSG00000003812	Dnase2a	Dnase2	deoxyribonuclease II alpha	protein-coding	5.49688431434797	4.86579864178145	5.36500117745922	4.80932069087659	5.76338928128427	5.64784461962392	5.37009305552582	5.48153379753105	0.461537712213625	0.116030300397535	0.533383733398323
Merged-chr17-87098037-2	chr17	87097927	87098127	+	797.0	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-9652.0	NM_019654	56468.0	Mm.126885	NM_019654	ENSMUSG00000037104	Socs5	1810018L08Rik|Cish5|mKIAA0671	suppressor of cytokine signaling 5	protein-coding	3.49386628450982	1.58744032225348	2.47851146707978	1.45679597915446	4.17168059391451	3.88427535679692	4.59336189504788	3.06866557626274	2.33094455084641	0.0572105244162687	0.353699006499343
Merged-chr7-35165081-2	chr7	35164981	35165181	+	559.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21304.0	NM_017394	53896.0	Mm.35567	NM_017394	ENSMUSG00000030495	Slc7a10	AL024237|Asc-1|D7Bwg0847e	solute carrier family 7 (cationic amino acid transporter, y+ system), member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-108653744-2	chr12	108653644	108653844	+	681.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163396, intron 4 of 14)	intron (NM_001163396, intron 4 of 14)	-4876.0	NR_029771	723909.0		NR_029771	ENSMUSG00000065436	Mir342	Mirn342|mmu-mir-342	microRNA 342	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-109139583-3	chr7	109139458	109139658	+	958.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302205, intron 3 of 3)	intron (NM_001302205, intron 3 of 3)	30954.0	NM_001302206	109594.0	Mm.360145	NM_057173	ENSMUSG00000036111	Lmo1	Rbtn-1|Rbtn1|Ttg1	LIM domain only 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-102986574-4	chr2	102986479	102986679	+	908.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-84914.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-123385010-2	chr8	123384910	123385110	+	828.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359076, intron 4 of 16)	B2_Mm2|SINE|B2	11299.0	NM_001286363	66855.0	Mm.178818	NM_025804	ENSMUSG00000001472	Tcf25	1100001J13Rik|1810041K11Rik|D8Ertd325e|Nulp1|mKIAA1049	transcription factor 25 (basic helix-loop-helix)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-120661084-1	chr2	120660984	120661184	+	582.0	f0_balb.idr	Intergenic	Intergenic	51489.0	NM_001290807	66296.0	Mm.221900	NM_025475	ENSMUSG00000027285	Haus2	1700101G24Rik|2410007P03Rik|AU020217|Cep27	HAUS augmin-like complex, subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-113645903-4	chr2	113645807	113646007	+	949.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285459, intron 13 of 16)	intron (NM_001285459, intron 13 of 16)	-39183.0	NM_001287818	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	-1.13813762856939	-1.2507343730774	-1.26064106151802	-1.11396409525121	-1.01175831575896	-1.24858755236558	-1.25839840440349	-1.26732207511331	-0.0288139213507401	0.992811007128033	1
Merged-chr2-15056049-4	chr2	15055969	15056169	+	897.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029466, intron 1 of 5)	intron (NM_029466, intron 1 of 5)	707.0	NM_029466	75869.0	Mm.174068	NM_029466	ENSMUSG00000017418	Arl5b	4930587A11Rik|AW146430|Arl8	ADP-ribosylation factor-like 5B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-45092516-4	chr14	45092407	45092607	+	753.854187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	104396.0	NM_008964	19217.0	Mm.4630	NM_008964	ENSMUSG00000037759	Ptger2	EP2|Ptgerep2	prostaglandin E receptor 2 (subtype EP2)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-9708148-1	chr18	9708048	9708248	+	1000.0	f0_balb.idr	intron (NM_130449, intron 1 of 9)	CpG	500.0	NM_130449	140792.0	Mm.218571	NM_130449	ENSMUSG00000036103	Colec12	CL-P1|SRCL|Scara4	collectin sub-family member 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-90058656-2	chr9	90058556	90058756	+	659.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001312649, intron 1 of 10)	RSINE1|SINE|B4	4389.0	NM_001312649	13036.0	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-184665577-3	chr1	184665506	184665706	+	782.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46891.0	NR_040627	74971.0	Mm.410816	NR_040627	ENSMUSG00000092578	4930488B22Rik	-	RIKEN cDNA 4930488B22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-101686552-4	chr4	101686440	101686640	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30867.0	NM_001122899	16847.0	Mm.259282	NM_010704	ENSMUSG00000057722	Lepr	LEPROT|Leprb|Modb1|OB-RGRP|Obr|db|diabetes|obese-like|obl	leptin receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-9182045-4	chr13	9181954	9182154	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	88173.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116159076-2	chr11	116158976	116159176	+	647.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172571, intron 7 of 30)	intron (NM_172571, intron 7 of 30)	9102.0	NM_172571	217335.0	Mm.35241	NM_172571	ENSMUSG00000020776	Fbf1	1110033G01Rik|5930413D20|mKIAA1863	Fas (TNFRSF6) binding factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-55021319-4	chr13	55021186	55021386	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001206390)	promoter-TSS (NM_001206390)	99.0	NM_001206392	212032.0	Mm.267479	NM_001033245	ENSMUSG00000025877	Hk3	HK III|HK-III	hexokinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-34856254-2	chr1	34856154	34856354	+	753.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357425, intron 2 of 8)	intron (NM_001357425, intron 2 of 8)	6265.0	NM_001357425	226971.0	Mm.292751	NM_145516	ENSMUSG00000026123	Plekhb2	2310009M15Rik|AU018239|Evt2|Phdc|evt-2	pleckstrin homology domain containing, family B (evectins) member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-26203663-4	chr11	26203558	26203758	+	866.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027973, intron 1 of 5)	intron (NR_027973, intron 1 of 5)	1418.0	NR_105791	102466154.0		NR_105791	ENSMUSG00000099015	Mir6372	Gm27358|mmu-mir-6372	microRNA 6372	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-110532362-4	chr9	110532256	110532456	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081340)	promoter-TSS (NM_001081340)	-241.0	NM_001081340	235626.0	Mm.288949	NM_001081340	ENSMUSG00000044791	Setd2	4921524K10Rik|BC031601|KMT3A	SET domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152526971-2	chr1	152526871	152527071	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 15 of 17)	intron (NM_016846, intron 15 of 17)	98246.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-56598735-2	chr9	56598635	56598835	+	554.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	36913.0	NM_001311076	235402.0	Mm.246605	NM_181074	ENSMUSG00000049556	Lingo1	4930471K13Rik|AV148400|LERN1|LINGO-1|Lrrn6a|UNQ201	leucine rich repeat and Ig domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191124016-5	chr1	191124016	191124216	+	852.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25702.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	0.180971930457524	1.00122488939463	0.198054385249851	0.191678195562404	0.724270699707645	1.01468052253415	0.199867503846241	0.192795948713767	0.688558800576251	0.73675822601144	1
Merged-chr17-34392443-4	chr17	34392243	34392443	+	874.31665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6477.0	NM_001001177	407788.0	Mm.73205	NM_001001177	ENSMUSG00000057246	BC051142	NG8|TSBP|Tesb|Tesbp	cDNA sequence BC051142	protein-coding	2.98764645459262	3.46018377935786	3.14599044492752	3.4915613691489	3.4115124657327	3.57575321261513	2.47032084038456	4.36882589452751	0.534291285568322	0.382359414827651	0.873396688145393
Merged-chr16-44759211-2	chr16	44759111	44759311	+	543.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6525.0	NM_021325	57781.0	Mm.416152	NM_021325	ENSMUSG00000022667	Cd200r1	CD200R|Mox2r|OX2R	CD200 receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-82993004-2	chr11	82992904	82993104	+	607.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-1174.0	NM_172796	237886.0	Mm.270253	NM_172796	ENSMUSG00000069793	Slfn9	9830137M10Rik	schlafen 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-67767815-4	chr15	67767707	67767907	+	999.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	491049.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	-1.84354474832578	-1.81325489144778	-1.53416061964661	-1.82993901100912	-1.8414184563789	-1.81126990231468	-1.82034119297928	-1.82859217979378	-1.52252619601533	0.665276690233728	1
Merged-chr8-104370096-2	chr8	104369996	104370196	+	729.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153582, intron 1 of 3)	L1MC4|LINE|L1	25711.0	NM_153582	97487.0	Mm.29658	NM_153582	ENSMUSG00000096188	Cmtm4	Cklfsf4|D19397|Gm9853	CKLF-like MARVEL transmembrane domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-172241092-4	chr1	172240986	172241186	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013734, intron 11 of 22)	intron (NM_013734, intron 11 of 22)	17338.0	NM_013734	27222.0	Mm.482392	NM_013734	ENSMUSG00000007107	Atp1a4	-	ATPase, Na+/K+ transporting, alpha 4 polypeptide	protein-coding	-0.862030634104754	-0.846340151604894	-0.851500953857566	-0.855415204408448	-0.861037010143218	-0.845072134051678	0.297607450125457	-0.854727637484263	3.74638014297664	0.190525819776624	1
Merged-chr5-137333113-2	chr5	137333013	137333213	+	945.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359611, intron 2 of 14)	intron (NM_001359611, intron 2 of 14)	469.0	NM_031406	83704.0	Mm.235625	NM_031406	ENSMUSG00000037344	Slc12a9	CIP1	solute carrier family 12 (potassium/chloride transporters), member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36680550-1	chr18	36680450	36680650	+	674.0	f1_balb.idr	5' UTR (NM_001083317, exon 2 of 4)	5' UTR (NM_001083317, exon 2 of 4)	-1184.0	NM_146085	225372.0	Mm.89673	NM_146085	ENSMUSG00000006050	Apbb3	Fe65l2|Rirl2|TR2S	amyloid beta (A4) precursor protein-binding, family B, member 3	protein-coding	-1.01707008444741	-0.993492043802862	-1.00764648088546	-1.01185324898415	-1.01628940292637	-0.0453400029982381	-1.00444222658639	-1.01130848519189	3.32945445846488	0.287936268400993	1
Merged-chr2-12023572-4	chr2	12023460	12023660	+	995.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	245807.0	NM_177268	320816.0	Mm.260201	NM_177268	ENSMUSG00000047909	Ankrd16	2810455F06Rik|AI646698|D430029B21Rik	ankyrin repeat domain 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128544644-2	chr10	128544544	128544744	+	749.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_134003, exon 3 of 3)	exon (NM_134003, exon 3 of 3)	3100.0	NM_134003	103284.0	Mm.68289	NM_134003	ENSMUSG00000039810	Zc3h10	AI790326	zinc finger CCCH type containing 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-166115963-1	chr1	166115863	166116063	+	556.0	f0_balb.idr	intron (NM_001033344, intron 2 of 5)	L2b|LINE|L2	11935.0	NM_001033344	240892.0	Mm.35315	NM_001033344	ENSMUSG00000026564	Dusp27	C130085G02Rik|Gm209	dual specificity phosphatase 27 (putative)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-21737861-2	chr5	21737761	21737961	+	547.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028431, intron 1 of 12)	intron (NM_028431, intron 1 of 12)	701.0	NM_028431	73078.0	Mm.301655	NM_028431	ENSMUSG00000029017	Pmpcb	3110004O18Rik|MPP11|MPPB|MPPP52	peptidase (mitochondrial processing) beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44600490-2	chr9	44600393	44600593	+	548.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4399.0	NM_001110826	13209.0	Mm.267061	NM_007841	ENSMUSG00000032097	Ddx6	1110001P04Rik|C430015D01Rik|E230023J21Rik|HLR2|mRCK/P54|p54|rck	DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	protein-coding	-1.50658480857466	-1.31822241545669	-1.32811469517455	-1.49189122903924	-1.50428850965973	-1.47172943794533	-1.32587529987902	-1.49043671238036	-0.805186615030075	0.80054413848678	1
Merged-chr1-58663589-2	chr1	58663489	58663689	+	683.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347056, intron 10 of 13)	intron (NM_001347056, intron 10 of 13)	10948.0	NR_045007	100504501.0	Mm.440933	NR_045007	ENSMUSG00000102059	Gm20257	-	caspase 8 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-93871036-3	chr2	93870934	93871134	+	791.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1877.0	NM_001033452	381411.0	Mm.9889	NM_001033452	ENSMUSG00000075023	Accsl	Gm1967	1-aminocyclopropane-1-carboxylate synthase (non-functional)-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-134558322-3	chr5	134558223	134558423	+	884.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001013751, exon 1 of 1)	exon (NM_001013751, exon 1 of 1)	1848.0	NM_001013751	214292.0	Mm.425290	NM_001013751	ENSMUSG00000085957	Syna	Gm453|Gm52|syncytin-A	syncytin a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-21036301-4	chr5	21036201	21036401	+	949.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011203, intron 1 of 17)	RSINE1|SINE|B4	-1054.0	NM_001356590	19248.0	Mm.319117	NM_011203	ENSMUSG00000028771	Ptpn12	P19-PTP|PTP-P19|PTP-PEST|PTPG1	protein tyrosine phosphatase, non-receptor type 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80680878-2	chr10	80680778	80680978	+	612.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-4585.0	NM_021462	17347.0	Mm.42126	NM_021462	ENSMUSG00000020190	Mknk2	2010016G11Rik|Gprk7|Mnk2	MAP kinase-interacting serine/threonine kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-52031494-4	chr16	52031323	52031523	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033238)	promoter-TSS (NM_001033238)	-126.0	NM_001033238	208650.0	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-5101655-2	chr11	5101555	5101755	+	648.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177370, intron 3 of 8)	intron (NM_177370, intron 3 of 8)	1490.0	NM_001290493	279766.0	Mm.260866	NM_177370	ENSMUSG00000034175	Rhbdd3	Ptag	rhomboid domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-105960770-2	chr3	105960670	105960870	+	637.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009725)	promoter-TSS (NM_009725)	-522.0	NM_009725	11950.0	Mm.251152	NM_009725	ENSMUSG00000000563	Atp5f1	C76477	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-92865592-4	chr16	92865499	92865699	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39525.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-96035572-3	chr9	96035473	96035673	+	919.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311130, intron 33 of 41)	intron (NM_001311130, intron 33 of 41)	80813.0	NM_011916	24127.0	Mm.291179	NM_011916	ENSMUSG00000032410	Xrn1	Dhm2|exo|mXrn1	5'-3' exoribonuclease 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-102471775-4	chr15	102471671	102471871	+	952.2291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001174073, intron 1 of 12)	intron (NM_001174073, intron 1 of 12)	1139.0	NM_001174073	18521.0	Mm.236513	NM_011042	ENSMUSG00000056851	Pcbp2	AW412548|Hnrpx|alphaCP-2	poly(rC) binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-29843055-2	chr17	29842955	29843155	+	888.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081160, exon 8 of 16)	exon (NM_001081160, exon 8 of 16)	44827.0	NM_001081160	74762.0	Mm.40901	NM_001081160	ENSMUSG00000043557	Mdga1	1200011I03Rik|GPIM|Mamdc3	MAM domain containing glycosylphosphatidylinositol anchor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-21750103-2	chr13	21750003	21750203	+	659.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_178211)	TTS (NM_178211)	450.0	NM_178211	319160.0	Mm.255646	NM_178211	ENSMUSG00000064288	Hist1h4k	-	histone cluster 1, H4k	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-37533620-3	chr16	37533526	37533726	+	566.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355727, intron 2 of 4)	intron (NM_001355727, intron 2 of 4)	6163.0	NM_028812	74197.0	Mm.287795	NM_028812	ENSMUSG00000022828	Gtf2e1	2610024P03Rik|56kDa|AI303800|FE|TFIIE-A	general transcription factor II E, polypeptide 1 (alpha subunit)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-172148715-4	chr1	172148644	172148844	+	996.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357204, intron 1 of 13)	intron (NM_001357204, intron 1 of 13)	729.0	NM_001357204	98193.0	Mm.159915	NM_153555	ENSMUSG00000026554	Dcaf8	AA408877|AA433120|AA792214|AU018973|C76055|D1Dau35e|D1Ucla4|H326|Wdr42a	DDB1 and CUL4 associated factor 8	protein-coding	2.06762592176624	2.17960509567019	1.36220049955657	2.56095531443444	2.4517825167847	2.19518015862995	2.25338374555798	2.29685250027073	0.441903540435865	0.627589060053229	0.980912176761026
Merged-chr17-86972052-4	chr17	86971972	86972172	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145491, intron 2 of 4)	intron (NM_145491, intron 2 of 4)	8961.0	NM_145491	104215.0	Mm.826	NM_145491	ENSMUSG00000024143	Rhoq	Arhq|TC10A|Tc10	ras homolog family member Q	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-37462289-4	chr13	37462171	37462371	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	116926.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	1.43253147310697	2.24029206304867	2.0369471699369	1.49291393257108	2.4563318112722	1.96937833746392	2.2968100657557	2.50297177001436	1.24409687338291	0.18490449776875	0.660415655093519
Merged-chr16-50437363-2	chr16	50437263	50437463	+	854.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-4897.0	NM_001347240	70508.0	Mm.28940	NM_027444	ENSMUSG00000022641	Bbx	5530401J07Rik|5730403O13Rik	bobby sox HMG box containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-155248435-1	chr4	155248335	155248535	+	545.0	f1_balb.idr	Intergenic	B1_Mm|SINE|Alu	-1531.0	NM_001190445	67513.0	Mm.10374	NM_001190445	ENSMUSG00000073684	Faap20	2610002J02Rik	Fanconi anemia core complex associated protein 20	protein-coding	0.590333220944659	1.39967592524133	0.435983109306676	0.427030427830645	1.10043526857725	1.41497533844478	0.438518808551094	0.428603896516101	0.549931002576923	0.753104530140014	0.998431161219273
Merged-chr12-84615940-2	chr12	84615840	84616040	+	758.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008992, intron 1 of 18)	B1_Mur3|SINE|Alu	1526.0	NM_008992	19300.0	Mm.229109	NM_008992	ENSMUSG00000021240	Abcd4	P69r|P70R|Pxmp1l	ATP-binding cassette, sub-family D (ALD), member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-136618777-4	chr1	136618694	136618894	+	976.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6107.0	NM_177643	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-79157891-2	chr11	79157791	79157991	+	554.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11418.0	NM_013571	16706.0	Mm.4745	NM_013571	ENSMUSG00000018334	Ksr1	AW492498|B-KSR1|D11Bhm183e|D11Bhm184e|Ksr|RSU2|hb|mKSR1	kinase suppressor of ras 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-21787823-4	chr16	21787701	21787901	+	980.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023737)	promoter-TSS (NM_023737)	33.0	NM_023737	74147.0	Mm.28100	NM_023737	ENSMUSG00000022853	Ehhadh	1300002P22Rik|HD|L-PBE|LBFP|LBP|MFP|MFP1|PBFE	enoyl-Coenzyme A, hydratase/3-hydroxyacyl Coenzyme A dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-150673976-4	chr2	150673854	150674054	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5714.0	NM_080575	68738.0	Mm.7044	NM_080575	ENSMUSG00000027452	Acss1	1110032O15Rik|AI788978|Acas2|Acas2l|AceCS2	acyl-CoA synthetase short-chain family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-108900776-2	chr8	108900676	108900876	+	983.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007496, intron 4 of 9)	intron (NM_007496, intron 4 of 9)	-36084.0	NR_037295	100526511.0		NR_037295	ENSMUSG00000093241	Mir3108	mir-3108|mmu-mir-3108	microRNA 3108	ncRNA	-1.17367364971587	-1.14665061133654	-1.15856004380685	-1.16834280623128	-1.17310571790619	-1.14406978763884	-0.42938571406771	-1.16659169643457	2.89727187181404	0.396361616615464	1
Merged-chr3-14578663-4	chr3	14578581	14578781	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007892)	promoter-TSS (NM_007892)	10.0	NM_007892	13559.0	Mm.153415	NM_007892	ENSMUSG00000027552	E2f5	AU024671|E2F-5	E2F transcription factor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-3077189-2	chr17	3077091	3077291	+	804.25	f0_balb.idr|f1_balb.idr	intron (NR_003519, intron 6 of 7)	intron (NR_003519, intron 6 of 7)	6992.0	NR_003519	328734.0	Mm.335641	NR_003519		Pisd-ps2	D030013I16Rik	phosphatidylserine decarboxylase, pseudogene 2	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44333178-1	chr9	44333078	44333278	+	737.0	f1_balb.idr	3' UTR (NM_007875, exon 9 of 9)	3' UTR (NM_007875, exon 9 of 9)	-1537.0	NM_010436	15270.0	Mm.245931	NM_010436	ENSMUSG00000049932	H2afx	AW228881|H2A.X|H2ax|Hist5-2ax|gammaH2ax	H2A histone family, member X	protein-coding	0.511220532558947	-0.0270480050980271	-0.0322430792089474	-0.0362496263467318	0.603175189647658	0.331009596963864	-0.0310974842373804	-0.0355497798465473	0.851999882005855	0.709216878820971	1
Merged-chr7-49004537-3	chr7	49004400	49004600	+	917.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111016, intron 2 of 38)	intron (NM_001111016, intron 2 of 38)	45427.0	NM_001111016	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-92012646-2	chr5	92012546	92012746	+	604.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016912, intron 12 of 13)	(CA)n|Simple_repeat|Simple_repeat	25173.0	NM_001177577	381651.0	Mm.332494	NM_001177577	ENSMUSG00000096035	Odaph	Gm1045|Gm1045-a|Gm1045-b	odontogenesis associated phosphoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180418097-2	chr1	180417997	180418197	+	663.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081175, intron 4 of 7)	intron (NM_001081175, intron 4 of 7)	65407.0	NM_001081227	381310.0	Mm.44791	NM_001081227	ENSMUSG00000053963	Stum	6330403A02Rik|Gm10001|R75555	mechanosensory transduction mediator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-33384346-3	chr8	33384222	33384422	+	899.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122822, intron 1 of 33)	intron (NM_001122822, intron 1 of 33)	1205.0	NM_001122822	22427.0	Mm.228805	NM_011721	ENSMUSG00000031583	Wrn	AI846146	Werner syndrome RecQ like helicase	protein-coding	3.71101578573938	3.96011363574225	2.60390034439946	2.16216381457729	3.57841399466696	3.36706588289373	3.66873068944819	3.41256147733314	0.299935722495121	0.636921662864243	0.982417279970648
Merged-chr9-119970325-2	chr9	119970225	119970425	+	621.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_153287)	TTS (NM_153287)	12698.0	NM_001357560	215418.0	Mm.491094	NM_153287	ENSMUSG00000032515	Csrnp1	4931429D10Rik|Axud1|CSRNP-1|URAX1|taip-3	cysteine-serine-rich nuclear protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-134347207-2	chr5	134347107	134347307	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	20753.0	NR_039544	100628570.0		NR_039544	ENSMUSG00000093311	Mir3965	mmu-mir-3965|mu-mir-3965	microRNA 3965	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-25800347-4	chr14	25800231	25800431	+	918.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31475.0	NM_001101433	71918.0	Mm.41904	NM_001101433	ENSMUSG00000055538	Zcchc24	2310047A01Rik	zinc finger, CCHC domain containing 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-142991766-4	chr6	142991653	142991853	+	925.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27301.0	NM_011374	20449.0	Mm.260838	NM_011374	ENSMUSG00000030283	St8sia1	9330109E03Rik|GD3S|Sia-T|Siat8|Siat8a	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-76941996-2	chr12	76941896	76942096	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361663, intron 3 of 4)	B1_Mus1|SINE|Alu	20252.0	NM_008558	17187.0	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101848712-2	chr7	101848612	101848812	+	654.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001303239, intron 2 of 5)	intron (NM_001303239, intron 2 of 5)	-3381.0	NM_008035	14276.0	Mm.439666	NM_008035	ENSMUSG00000032725	Folr2	FBP2|FR-P3|FR-beta|Folbp-2|Folbp2	folate receptor 2 (fetal)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16095558-2	chr7	16095458	16095658	+	762.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001347559, exon 13 of 14)	exon (NM_001347559, exon 13 of 14)	-3022.0	NM_025898	108124.0	Mm.104540	NM_025898	ENSMUSG00000006024	Napa	1500039N14Rik|AW209189|RA81|SNAP-alpha|SNAPA|SNARE|a-SNAP|hyh	N-ethylmaleimide sensitive fusion protein attachment protein alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70599737-2	chr8	70599637	70599837	+	791.333313	f1_balb.idr|f1_c57bl6.idr	exon (NM_133772, exon 7 of 17)	exon (NM_133772, exon 7 of 17)	5256.0	NM_023627	71780.0	Mm.29357	NM_023627	ENSMUSG00000019139	Isyna1	1300017C10Rik|AU018670	myo-inositol 1-phosphate synthase A1	protein-coding	1.41893749976218	1.27861834985611	0.711818036541536	1.6791026383787	0.68869512790314	1.28972836603215	0.714519327044818	1.05730456674436	-1.55886386045124	0.296851797919897	0.800117757751872
Merged-chr7-139246206-2	chr7	139246104	139246304	+	718.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2278.0	NM_001033206	101631.0	Mm.334300	NM_001033206	ENSMUSG00000060260	Pwwp2b	AI594893|D7Ertd517e|D930023J19Rik|Pwwp2	PWWP domain containing 2B	protein-coding	0.80098534922863	1.37625617194087	1.71523503952933	0.64221815153058	1.20331570517985	0.668124427393391	1.33081499589116	0.643997593476627	-0.850490519162457	0.577878804939596	0.96585843058813
Merged-chr9-83570074-3	chr9	83569964	83570164	+	885.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172507, intron 1 of 3)	intron (NM_172507, intron 1 of 3)	21726.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	3.80443183110798	3.89436066762822	2.94964679932687	3.14093712134323	3.28593418551149	1.58683956694852	2.26859008523362	1.99204113287654	-1.76636906026346	0.0188028065578005	0.172210742809535
Merged-chr9-50801210-2	chr9	50801110	50801310	+	609.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045601, intron 8 of 13)	intron (NR_045601, intron 8 of 13)	25985.0	NR_045601	102580.0	Mm.160035	NM_133981	ENSMUSG00000032059	Alg9	8230402H15Rik|AI747665|B430313H07Rik|Dibd1	asparagine-linked glycosylation 9 (alpha 1,2 mannosyltransferase)	protein-coding	-1.5356785800515	-1.50457819905931	-1.51398321097173	-1.52170876778291	-1.25174950685677	-1.50254009374394	-1.51185412242675	-1.37234212311997	1.86472964096384	0.593287162270504	1
Merged-chr3-121674313-4	chr3	121674222	121674422	+	634.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033814, intron 3 of 5)	intron (NM_001033814, intron 3 of 5)	3559.0	NM_001033814	619318.0	Mm.371258	NM_001033814	ENSMUSG00000074248	4930432M17Rik	-	RIKEN cDNA 4930432M17 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-35269851-4	chr7	35269719	35269919	+	960.5166630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20B2|LTR|ERVK	48621.0	NM_026181	67471.0	Mm.358705	NM_026181	ENSMUSG00000063808	Gpatch1	1300003A17Rik|ECGP|Gpatc1	G patch domain containing 1	protein-coding	1.46917883343387	1.21618889735998	0.456359711577153	0.446324845325819	1.62158993033966	0.471943802811756	0.459195879695365	0.448090954887956	-0.401512705560261	0.898387606692129	0.998431161219273
Merged-chr9-107738214-3	chr9	107738103	107738303	+	933.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27728.0	NM_011349	20350.0	Mm.12903	NM_011349	ENSMUSG00000034684	Sema3f	Sema4|Semak	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-122848215-4	chr4	122848088	122848288	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008917, intron 4 of 8)	intron (NM_008917, intron 4 of 8)	11961.0	NM_008917	19063.0	Mm.277719	NM_008917	ENSMUSG00000028657	Ppt1	9530043G02Rik|AA960502|C77813|CLN1|D4Ertd184e|INCL|PPT	palmitoyl-protein thioesterase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-10480016-4	chr16	10479898	10480098	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302619)	promoter-TSS (NM_001302619)	-74.0	NM_001302619	12265.0	Mm.249560	NM_007575	ENSMUSG00000022504	Ciita	C2ta|EG669998|Gm9475|Mhc2ta	class II transactivator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106155945-2	chr11	106155845	106156045	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001356459)	TTS (NM_001356459)	3982.0	NM_001356459	67803.0	Mm.21687	NM_172397	ENSMUSG00000040699	Limd2	0610025L06Rik|AI413966	LIM domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-48983444-5	chr7	48983347	48983547	+	687.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111016, intron 2 of 38)	intron (NM_001111016, intron 2 of 38)	24374.0	NM_001111016	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-49923133-3	chr7	49923041	49923241	+	890.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146013, intron 5 of 15)	PB1D11|SINE|Alu	11441.0	NM_148931	104245.0	Mm.207053	NM_148931	ENSMUSG00000039728	Slc6a5	Glyt2|prestin	solute carrier family 6 (neurotransmitter transporter, glycine), member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-127340311-2	chr1	127340211	127340411	+	648.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145128, intron 4 of 17)	MTEb|LTR|ERVL-MaLR	135325.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-51008630-4	chr9	51008520	51008720	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178710, intron 1 of 15)	CpG	453.0	NM_178710	235344.0	Mm.104932	NM_178710	ENSMUSG00000037112	Sik2	G630080D20Rik|Snf1lk2	salt inducible kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-137389168-4	chr4	137389066	137389266	+	892.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20625.0	NM_001126318	242711.0	Mm.475541	NM_001126318	ENSMUSG00000078520	Cela3a	Gm13011	chymotrypsin-like elastase family, member 3A	protein-coding	-0.973420454409262	-1.32062347626183	-1.33050850609429	-1.33862836391711	-1.34999588871066	-1.31848134906075	-1.3282707520139	-1.18163826627392	-0.987604359287374	0.774485391035196	1
Merged-chr10-77615028-2	chr10	77614923	77615123	+	865.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301672, intron 3 of 3)	B1_Mus1|SINE|Alu	1314.0	NR_125903	20610.0	Mm.24433	NM_019929	ENSMUSG00000020265	Sumo3	2810014B19Rik|D10Ertd345e|SMT3A|SUMO-3|Smt3h1	small ubiquitin-like modifier 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118423455-4	chr11	118423330	118423530	+	857.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4312.0	NM_001267592	76025.0	Mm.177551	NM_029502	ENSMUSG00000025575	Cant1	5830420C20Rik|Apy1h|D11Bwg0554e|Entpd8|SCAN-1|Shapy	calcium activated nucleotidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-76583046-3	chr12	76582971	76583171	+	910.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_013675, exon 36 of 36)	3' UTR (NM_013675, exon 36 of 36)	-35146.0	NR_046044	100504549.0	Mm.440349	NR_046044	ENSMUSG00000112388	AI463170	-	expressed sequence AI463170	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-130795003-4	chr3	130794883	130795083	+	984.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64585.0	NM_001005859	68436.0	Mm.140568	NM_026724	ENSMUSG00000062006	Rpl34	1100001I22Rik	ribosomal protein L34	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-84995713-2	chr15	84995584	84995784	+	1000.0	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-7713.0	NM_001033273	223739.0	Mm.323925	NM_001033273	ENSMUSG00000036046	5031439G07Rik	AW554572|mKIAA0930	RIKEN cDNA 5031439G07 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-86890904-2	chr12	86890804	86891004	+	766.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6090.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-8011253-3	chr10	8011149	8011349	+	686.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55126.0	NM_138667	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-15021694-3	chr17	15021591	15021791	+	985.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001123372, intron 11 of 11)	intron (NM_001123372, intron 11 of 11)	-11507.0	NM_198104	21647.0	Mm.440445	NM_011560	ENSMUSG00000079707	Tcte3	D17Leh117c|LC2|Tcte-3|Tctex-2|Tctex-4|Tctex2|Tctex4	t-complex-associated testis expressed 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115503126-2	chr11	115503026	115503226	+	703.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_008258, exon 2 of 5)	exon (NM_008258, exon 2 of 5)	11267.0	NM_008258	15374.0	Mm.1775	NM_008258	ENSMUSG00000020737	Jpt1	Hn1	Jupiter microtubule associated homolog 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-15847432-2	chr3	15847342	15847542	+	745.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001173459, intron 1 of 5)	Lx2|LINE|L1	1045.0	NM_001173459	100038947.0	Mm.330924	NM_001173459	ENSMUSG00000074677	LOC100038947	-	signal-regulatory protein beta 1-like	protein-coding	0.22658633130781	-0.031289654416049	-0.0369534533369954	-0.0413325109160189	-0.0475354504075169	-0.0300147401193074	0.662417007617688	0.612534457000912	2.48450124801296	0.277313412565473	1
Merged-chr8-68362048-1	chr8	68361948	68362148	+	649.0	f0_balb.idr	intron (NM_172753, intron 9 of 9)	intron (NM_172753, intron 9 of 9)	-6411.0	NR_038189	73609.0	Mm.443247	NR_038181	ENSMUSG00000085197	1700125H03Rik	4930510D22Rik	RIKEN cDNA 1700125H03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69361283-2	chr11	69361183	69361383	+	567.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146019, intron 7 of 39)	intron (NM_146019, intron 7 of 39)	8143.0	NM_146019	216848.0	Mm.178246	NM_146019	ENSMUSG00000018474	Chd3	2600010P09Rik|AF020312|Chd7|Prp7|Prp9-1	chromodomain helicase DNA binding protein 3	protein-coding	-1.20406370813143	-1.56956373024278	-1.57884638916872	-1.58647144159385	-1.598104728449	-1.56755213932999	-1.57674499865798	-1.58510656085539	-1.70745470802464	0.626337835847419	1
Merged-chr10-127002196-1	chr10	127002096	127002296	+	586.0	f0_balb.idr	intron (NM_009635, intron 1 of 19)	intron (NM_009635, intron 1 of 19)	1487.0	NM_009635	11567.0	Mm.10739	NM_009635	ENSMUSG00000025432	Avil	Advil|DOC6	advillin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30077615-4	chr2	30077512	30077712	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1086.0	NM_153805	263803.0	Mm.233843	NM_153805	ENSMUSG00000026785	Pkn3	AW209115|BC034126	protein kinase N3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69325388-2	chr11	69325288	69325488	+	793.416687	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010599)	promoter-TSS (NM_010599)	-870.0	NM_010599	16499.0	Mm.232472	NM_010599	ENSMUSG00000018470	Kcnab3	C330022D06Rik|Kcnab4|mKv(beta)4	potassium voltage-gated channel, shaker-related subfamily, beta member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24437424-2	chr17	24437324	24437524	+	738.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_010023, intron 5 of 6)	intron (NM_010023, intron 5 of 6)	5677.0	NM_025718	66705.0	Mm.29017	NM_025718	ENSMUSG00000024136	Dnase1l2	4733401H14Rik	deoxyribonuclease 1-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-5208424-3	chr10	5208286	5208486	+	862.849976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347711, intron 86 of 145)	intron (NM_001347711, intron 86 of 145)	-13679.0	NM_001079686	64009.0	Mm.331626	NM_022027	ENSMUSG00000096054	Syne1	8B|A330049M09Rik|BE692247|C130039F11Rik|CPG2|KASH1|Myne1|mKIAA1756|myne-1	spectrin repeat containing, nuclear envelope 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-82969788-2	chr10	82969693	82969893	+	640.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME3A|LINE|L1	-15704.0	NM_021439	58250.0	Mm.360747	NM_021439	ENSMUSG00000034612	Chst11	1110020P09Rik|C4ST|C4ST-1|C4ST1|C4s	carbohydrate sulfotransferase 11	protein-coding	1.14422603052017	1.23758174538166	2.2348037829153	2.53173727475368	2.61953806606243	2.21158898773489	1.85110982519018	1.93870385965828	0.598737643268949	0.576049943016932	0.965286201225318
Merged-chr17-71182459-4	chr17	71182373	71182573	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1059.0	NM_001357791	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-139971612-3	chr7	139971518	139971718	+	648.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001347613)	TTS (NM_001347613)	7137.0	NM_001347614	381933.0	Mm.440431	NM_001033465	ENSMUSG00000073795	6430531B16Rik	Gm1093	RIKEN cDNA 6430531B16 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-88596578-1	chr1	88596478	88596678	+	542.0	f1_balb.idr	Intergenic	Intergenic	45061.0	NR_037971	100503197.0	Mm.99352	NR_037971	ENSMUSG00000100798	Gm19589	-	predicted gene, 19589	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-93711744-4	chr16	93711634	93711834	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026700)	promoter-TSS (NM_026700)	-173.0	NM_026700	70028.0	Mm.23230	NM_026700	ENSMUSG00000022946	Dopey2	0610038M01Rik|2610510B01Rik|AI503246|C21orf5|mKIAA0933	dopey family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-22020832-7	chr14	22020707	22020907	+	930.4285890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028275, intron 1 of 6)	intron (NM_028275, intron 1 of 6)	1095.0	NM_028275	76633.0	Mm.489898	NM_028275	ENSMUSG00000063458	Lrmda	1700112E06Rik|2700009F18Rik	leucine rich melanocyte differentiation associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-63590128-4	chr4	63590030	63590230	+	910.383301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4|LINE|L1	10634.0	NM_001354647	670833.0	Mm.32213	NM_001354647	ENSMUSG00000084782	Gm11213	-	predicted gene 11213	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-60601267-2	chr13	60601167	60601367	+	614.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285917)	promoter-TSS (NM_001285917)	-680.0	NM_001285917	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88606526-2	chr3	88606426	88606626	+	732.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9681.0	NM_001198911	16800.0	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-23999607-4	chr16	23999489	23999689	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10737.0	NM_009744	12053.0	Mm.347398	NM_009744	ENSMUSG00000022508	Bcl6	Bcl5	B cell leukemia/lymphoma 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-59334210-2	chr4	59334110	59334310	+	601.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163288, intron 12 of 16)	intron (NM_001163288, intron 12 of 16)	74159.0	NR_105031	101055769.0	Mm.421401	NR_105031		Gm12596	-	predicted gene 12596	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-88489498-2	chr15	88489398	88489598	+	776.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-110804.0	NM_027306	70073.0	Mm.45306	NM_027306	ENSMUSG00000054117	Zdhhc25	1700030J15Rik	zinc finger, DHHC domain containing 25	protein-coding	0.728818843314675	1.1816583093634	1.63221210914492	1.1062819992261	0.73152124887313	1.19101025943361	1.74159791473907	1.11214675749405	0.177023034398481	0.899227582924427	0.998431161219273
Merged-chr2-172468078-2	chr2	172467978	172468178	+	660.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025542, intron 8 of 8)	intron (NM_025542, intron 8 of 8)	-4476.0	NM_029608	76426.0	Mm.46148	NM_029608	ENSMUSG00000027505	Fam209	1700029J11Rik	family with sequence similarity 209	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-75057067-4	chr14	75056962	75057162	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030568, intron 2 of 3)	intron (NR_030568, intron 2 of 3)	41035.0	NM_198642	271221.0	Mm.320280	NM_198642	ENSMUSG00000034959	Rubcnl	5031414D18Rik|Gm744|Gm911|Kiaa0226l	RUN and cysteine rich domain containing beclin 1 interacting protein like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-5821168-2	chr18	5821068	5821268	+	564.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	228521.0	NM_001360981	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-90173203-2	chr18	90173103	90173303	+	603.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus1|LINE|L1	-336951.0	NM_198295	67988.0	Mm.268041	NM_198295	ENSMUSG00000024614	Tmx3	6430411B10Rik|A730024F05Rik|AV259382|Txndc10|mKIAA1830	thioredoxin-related transmembrane protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-21445972-2	chr13	21445872	21446072	+	561.833374	f1_balb.idr|f1_c57bl6.idr	TTS (NR_035441)	TTS (NR_035441)	812.0	NR_035441	100316752.0		NR_035441	ENSMUSG00000084590	Mir1896	Mirn1896|mmu-mir-1896	microRNA 1896	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-119754378-2	chr8	119754278	119754478	+	852.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026922, intron 24 of 26)	intron (NM_026922, intron 24 of 26)	24038.0	NM_028883	74347.0	Mm.358759	NM_028883	ENSMUSG00000034105	Tldc1	4632415K11Rik|Kiaa1609	TBC/LysM associated domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-105720012-1	chr3	105719912	105720112	+	720.0	f1_balb.idr	3' UTR (NM_175398, exon 2 of 2)	3' UTR (NM_175398, exon 2 of 2)	14554.0	NM_001163356	109050.0	Mm.212591	NM_175398	ENSMUSG00000048458	Fam212b	6530418L21Rik|inka2	family with sequence similarity 212, member B	protein-coding	-1.56355737717652	-1.81244775989375	-1.82128546162293	-1.82854501295842	-1.83962066705452	-1.81053259306168	-1.81928479966835	-1.82724555674025	-1.28500227969968	0.715751224811686	1
Merged-chr4-35224239-4	chr4	35224133	35224333	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081343, intron 1 of 10)	MER44B|DNA|TcMar-Tigger	1647.0	NM_001081343	73205.0	Mm.331544	NM_001081343	ENSMUSG00000028300	3110043O21Rik	AI840585|C9orf72	RIKEN cDNA 3110043O21 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-122611819-4	chr2	122611701	122611901	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025961)	promoter-TSS (NM_025961)	-524.0	NM_025961	67092.0	Mm.29975	NM_025961	ENSMUSG00000027199	Gatm	1810003P21Rik|AI314789|AT	glycine amidinotransferase (L-arginine:glycine amidinotransferase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-148772371-2	chr1	148772269	148772469	+	635.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	1150070.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141466676-2	chr7	141466576	141466776	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009842)	promoter-TSS (NM_009842)	-686.0	NM_009842	12476.0	Mm.30246	NM_009842	ENSMUSG00000025510	Cd151	PETA-3|SFA-1|Tspan24	CD151 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-157426332-3	chr2	157426231	157426431	+	981.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025395, intron 1 of 13)	intron (NM_001025395, intron 1 of 13)	2038.0	NM_001025395	20779.0	Mm.22845	NM_009271	ENSMUSG00000027646	Src	AW259666|pp60c-src	Rous sarcoma oncogene	protein-coding	2.93957899975566	2.52688930104769	1.7510434431548	3.1577982025546	2.96335364485728	2.54551029122304	2.16352785929951	2.25078278579914	-0.359448717411275	0.655497610860779	0.98843657332731
Merged-chr5-140108086-4	chr5	140107977	140108177	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359025, intron 14 of 17)	intron (NM_001359025, intron 14 of 17)	66841.0	NM_001359027	17120.0	Mm.27250	NM_010752	ENSMUSG00000029554	Mad1l1	AI173502|AW550425|Mad1	MAD1 mitotic arrest deficient 1-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-23842374-2	chr17	23842274	23842474	+	586.083374	f1_balb.idr|f1_c57bl6.idr	exon (NM_027644, exon 5 of 7)	exon (NM_027644, exon 5 of 7)	1782.0	NM_027644	71003.0	Mm.328839	NM_027644	ENSMUSG00000024114	Prss41	4931440B09Rik|Tessp-1|Tessp1	protease, serine 41	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-24617859-2	chr13	24617759	24617959	+	930.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178658, intron 1 of 13)	intron (NM_178658, intron 1 of 13)	3253.0	NM_178658	193385.0	Mm.217319	NM_029679	ENSMUSG00000036006	Ripor2	Fam65b	RHO family interacting cell polarization regulator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-67246693-4	chr17	67246670	67246870	+	929.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	107689.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	3.73235300179538	3.41349197259486	3.97091488669297	3.1147062850545	3.5526428369261	2.70546314470247	3.1296186127634	2.35744967527573	-0.917373754505224	0.134424591098321	0.572194741247986
Merged-chr13-49197020-4	chr13	49196910	49197110	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_013610)	TTS (NM_013610)	9463.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135689828-4	chr5	135689743	135689943	+	794.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008898, intron 1 of 15)	intron (NM_008898, intron 1 of 15)	698.0	NM_008898	18984.0	Mm.3863	NM_008898	ENSMUSG00000005514	Por	4933424M13Rik|CPR|CYPOR|P450R	P450 (cytochrome) oxidoreductase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76372474-2	chr15	76372374	76372574	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_183099, exon 7 of 8)	exon (NM_183099, exon 7 of 8)	2464.0	NM_183099	73542.0	Mm.159026	NM_183099	ENSMUSG00000060794	Tssk5	1700091F14Rik	testis-specific serine kinase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65313081-2	chr9	65312981	65313181	+	605.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011802, intron 6 of 13)	intron (NM_011802, intron 6 of 13)	18821.0	NM_001044389	270166.0	Mm.30088	NM_011802	ENSMUSG00000015357	Clpx	AU014732|E330029I21	caseinolytic mitochondrial matrix peptidase chaperone subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-53905838-3	chr18	53905726	53905926	+	774.600037	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152809, intron 3 of 12)	MIR|SINE|MIR	43713.0	NM_152809	70425.0	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-47367462-3	chr14	47367246	47367446	+	920.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6514.0	NM_010705	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	0.650351969471299	1.21171759792464	0.696386612870537	0.527765053718999	0.976169674239604	0.880717975264152	0.534233372377841	0.935455016427061	0.190982173499335	0.904344453907544	1
Merged-chr6-122638766-5	chr6	122638629	122638829	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12305.0	NM_139218	73708.0	Mm.27982	NM_139218	ENSMUSG00000046323	Dppa3	2410075G02Rik|PCG7|PGC7|Stella	developmental pluripotency-associated 3	protein-coding	2.08377824422553	1.8664339536165	2.47659290098266	2.40727276821445	2.6216719212493	2.47214080068045	1.37164236245775	2.31740560223016	0.125969748578831	0.890637322553197	0.998431161219273
Merged-chr11-100612346-4	chr11	100612250	100612450	+	756.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019795, intron 1 of 13)	MLTR14|LTR|ERV1	7818.0	NM_019795	56354.0	Mm.402409	NM_019795	ENSMUSG00000014195	Dnajc7	2010003F24Rik|2010004G07Rik|CCRP|Ttc2|mDj11|mTpr2	DnaJ heat shock protein family (Hsp40) member C7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-32585575-2	chr11	32585475	32585675	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 4 of 18)	intron (NM_009288, intron 4 of 18)	52309.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-140988804-4	chr4	140988729	140988929	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164366, intron 1 of 28)	intron (NM_001164366, intron 1 of 28)	1956.0	NM_001164366	74772.0	Mm.205625	NM_029097	ENSMUSG00000036622	Atp13a2	1110012E06Rik|AA589443	ATPase type 13A2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-6267833-4	chr11	6267748	6267948	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026538)	promoter-TSS (NM_026538)	-119.0	NM_026538	52513.0	Mm.29810	NM_026538	ENSMUSG00000004393	Ddx56	2600001H07Rik|D11Ertd619e|Noh61	DEAD (Asp-Glu-Ala-Asp) box polypeptide 56	protein-coding	4.43104404255234	4.32572290398825	5.05245358696056	5.21199677136656	5.25143019817042	4.55019523100504	4.93646096115906	4.91391789730413	0.160638923774386	0.655395498489665	0.98843657332731
Merged-chr17-12757177-2	chr17	12757077	12757277	+	886.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010515, intron 1 of 47)	intron (NM_010515, intron 1 of 47)	12529.0	NM_010515	16004.0	Mm.26553	NM_010515	ENSMUSG00000023830	Igf2r	AI661837|CD222|CI-MPR|M6P/IGF2R|Mpr300	insulin-like growth factor 2 receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-32588488-3	chr6	32588391	32588591	+	985.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175750)	promoter-TSS (NM_175750)	-299.0	NM_175750	243743.0	Mm.444029	NM_175750	ENSMUSG00000029765	Plxna4	9330117B14|Plxa4|mKIAA1550	plexin A4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-123525357-4	chr9	123525263	123525463	+	896.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-4390.0	NM_001357485	83493.0	Mm.273671	NM_030692	ENSMUSG00000025240	Sacm1l	SAC1|Sac1p|mKIAA0851	SAC1 suppressor of actin mutations 1-like (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-31356211-2	chr9	31356111	31356311	+	776.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080817, intron 13 of 20)	intron (NM_001080817, intron 13 of 20)	-29981.0	NM_172766	235134.0	Mm.238146	NM_172766	ENSMUSG00000042185	Nfrkb	A530090G11Rik	nuclear factor related to kappa B binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-96077673-2	chr10	96077573	96077773	+	638.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	137010.0	NM_001001932	216238.0	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-60890719-1	chr19	60890619	60890819	+	757.0	f1_c57bl6.idr	intron (NM_018869, intron 1 of 15)	intron (NM_018869, intron 1 of 15)	970.0	NM_018869	14773.0	Mm.279400	NM_018869	ENSMUSG00000003228	Grk5	Gprk5	G protein-coupled receptor kinase 5	protein-coding	0.237743969435028	0.152858021008239	-0.152034526822889	0.101799413319596	0.0698235191965932	-0.147986815342658	-0.151310627036059	-0.154113006541041	-1.98848548371819	0.385370759850319	1
Merged-chr1-138159137-4	chr1	138159061	138159261	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001268286, intron 2 of 28)	intron (NM_001268286, intron 2 of 28)	15965.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-27264356-4	chr8	27264284	27264484	+	963.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007918, intron 1 of 2)	intron (NM_007918, intron 1 of 2)	4057.0	NM_007918	13685.0	Mm.6700	NM_007918	ENSMUSG00000031490	Eif4ebp1	4e-bp1|AA959816|PHAS-I	eukaryotic translation initiation factor 4E binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-96244723-4	chr5	96244626	96244826	+	875.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053158, intron 7 of 8)	L1ME1|LINE|L1	34611.0	NM_053158	94061.0	Mm.295499	NM_053158	ENSMUSG00000029486	Mrpl1	2410002L03Rik|5830418D04Rik|AI462572|L1mt	mitochondrial ribosomal protein L1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81105062-4	chr15	81104960	81105160	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153049)	promoter-TSS (NM_153049)	-13.0	NM_153049	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	3.97441485540231	3.50825049866874	3.73584451346967	3.28965435521578	3.90559008262835	3.42763162925863	4.26134497731511	4.23876893317178	0.493427980529605	0.313083528749056	0.81483214271826
Merged-chr14-70553700-1	chr14	70553600	70553800	+	619.0	f1_balb.idr	promoter-TSS (NM_021877)	promoter-TSS (NM_021877)	-356.0	NM_021877	15460.0	Mm.7598	NM_021877	ENSMUSG00000022096	Hr	ALUNC|AU|N|ba|bldy|hr|rh|rh-bmh|rhino	hairless	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-66295077-2	chr14	66294977	66295177	+	656.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_038077)	TTS (NR_038077)	-1948.0	NM_029979	66854.0	Mm.43871	NM_029979	ENSMUSG00000022043	Trim35	0710005M05Rik|A430106H13Rik|AW046487|HLS5|Mair|NC8|mKIAA1098	tripartite motif-containing 35	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-47642883-4	chr9	47642791	47642991	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	112539.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	2.61022896755607	2.6814584592971	2.94064341073368	2.21386799745567	2.82429505853107	2.9560253361233	3.84887300912444	2.7683444693337	0.997083709161825	0.150653172785684	0.602589676101411
Merged-chr2-11739023-2	chr2	11738923	11739123	+	739.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	33311.0	NM_001271500	16169.0	Mm.200196	NM_008358	ENSMUSG00000023206	Il15ra	AA690181|IL-15RA	interleukin 15 receptor, alpha chain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-116615867-4	chr3	116615773	116615973	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289568, intron 9 of 17)	ORR1E|LTR|ERVL-MaLR	-1286.0	NM_030016	229780.0	Mm.259648	NM_030016	ENSMUSG00000033439	Trmt13	4631408H19Rik|A330067P21|A930028L21Rik|Ccdc76	tRNA methyltransferase 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33811165-2	chr16	33811065	33811265	+	566.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010739, intron 8 of 12)	intron (NM_010739, intron 8 of 12)	17128.0	NM_010739	17063.0	Mm.3177	NM_010739	ENSMUSG00000022824	Muc13	114/A10|14/A10|AI159736|Lrrp|Ly64|NJ-1	mucin 13, epithelial transmembrane	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-108284592-2	chr3	108284492	108284692	+	670.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_019972, intron 1 of 19)	GC_rich|Low_complexity|Low_complexity	528.0	NM_019972	20661.0	Mm.157119	NM_019972	ENSMUSG00000068747	Sort1	2900053A11Rik|AI852375|Ntr3|Ntsr3	sortilin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-43363146-4	chr11	43363050	43363250	+	812.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	11311.0	NR_029558	387164.0		NR_029558	ENSMUSG00000065601	Mir146	Mirn146|miR-146a|mmu-mir-146	microRNA 146	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81090853-2	chr10	81090753	81090953	+	576.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145365, intron 5 of 11)	intron (NM_145365, intron 5 of 11)	8019.0	NM_145365	208677.0	Mm.294693	NM_145365	ENSMUSG00000035041	Creb3l3	BC010786|CREB-H|D10Bur1e	cAMP responsive element binding protein 3-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-122047578-2	chr3	122047478	122047678	+	562.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007378, intron 1 of 49)	intron (NM_007378, intron 1 of 49)	3118.0	NM_007378	11304.0	Mm.3918	NM_007378	ENSMUSG00000028125	Abca4	AW050280|Abc10|Abcr|D430003I15Rik|RmP	ATP-binding cassette, sub-family A (ABC1), member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-55147628-4	chr11	55147515	55147715	+	997.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172258, intron 3 of 10)	intron (NM_172258, intron 3 of 10)	4091.0	NM_172258	215332.0	Mm.87054	NM_172258	ENSMUSG00000049491	Slc36a3	PAT3|TRAMD2|tramdorin2	solute carrier family 36 (proton/amino acid symporter), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-67516199-1	chr13	67516099	67516299	+	738.200012	f0_c57.idr	3' UTR (NM_133228, exon 4 of 4)	3' UTR (NM_133228, exon 4 of 4)	10032.0	NM_133228	170763.0	Mm.491205	NM_133228	ENSMUSG00000097333	Zfp87	2210039O17Rik|4631412O18Rik|KRAB4|Mzf22|Zfp72	zinc finger protein 87	protein-coding	-0.99248344514524	-1.06932965234831	-1.07961115723891	-1.24983170112977	-1.25737628114484	-1.22887661699876	-1.23905865954641	-1.24831995453867	-2.36306025272737	0.439451619451404	1
Merged-chr11-117831892-2	chr11	117831792	117831992	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027827, intron 2 of 10)	B1_Mur3|SINE|Alu	-5878.0	NM_009387	21877.0	Mm.2661	NM_009387	ENSMUSG00000025574	Tk1	D530002A18Rik|Tk-1|Tk1a|Tk1b	thymidine kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117747148-3	chr10	117747058	117747258	+	864.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029875)	promoter-TSS (NM_029875)	-800.0	NM_029875	215436.0	Mm.256753	NM_029875	ENSMUSG00000060181	Slc35e3	9330166G04Rik|AI481200	solute carrier family 35, member E3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131052784-7	chr1	131052697	131052897	+	998.285706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008551)	TTS (NM_008551)	32952.0	NM_010548	16153.0	Mm.874	NM_010548	ENSMUSG00000016529	Il10	CSIF|Il-10	interleukin 10	protein-coding	2.1120033925549	1.8067256942308	1.41799486765879	2.225923705211	1.8648003634064	1.6555014091029	1.76282416109835	1.71316106604872	-0.554322967096197	0.579606487972481	0.965985075107763
Merged-chr11-31741755-1	chr11	31741655	31741855	+	664.0	f1_c57bl6.idr	Intergenic	L2c|LINE|L2	-69893.0	NM_001024919	69556.0	Mm.34183	NM_001024919	ENSMUSG00000044502	Bod1	2310022M17Rik|BOD2.1|Fam44b	biorientation of chromosomes in cell division 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-48266750-3	chr17	48266661	48266861	+	780.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033922, intron 2 of 5)	RLTR22_Mur|LTR|ERVK	2466.0	NM_001163796	224840.0	Mm.131234	NM_172623	ENSMUSG00000051682	Treml4	5031403H21Rik|BB137214|IDCP1|TLT-4|TLT4|Treml3	triggering receptor expressed on myeloid cells-like 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-157425415-2	chr2	157425315	157425515	+	708.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025395, intron 1 of 13)	intron (NM_001025395, intron 1 of 13)	1122.0	NM_001025395	20779.0	Mm.22845	NM_009271	ENSMUSG00000027646	Src	AW259666|pp60c-src	Rous sarcoma oncogene	protein-coding	1.6487569682113	2.72845144759113	1.5703321234919	3.02175540430893	1.66307952785727	2.74954177347273	1.58254361033423	3.03747126779179	0.0339702935136567	0.971598937529808	0.998431161219273
Merged-chr4-46689621-3	chr4	46689531	46689731	+	766.866638	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081141, intron 13 of 18)	intron (NM_001081141, intron 13 of 18)	-39432.0	NM_198664	381605.0	Mm.331595	NM_198664	ENSMUSG00000039813	Tbc1d2	A630005A06Rik|BC022630|Gm1037|PARIS-1|PARIS1	TBC1 domain family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-79359014-3	chr12	79358910	79359110	+	823.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	61659.0	NM_001252562	19363.0	Mm.341756	NM_009014	ENSMUSG00000059060	Rad51b	AI553500|R51H2|Rad51l1|mREC2	RAD51 paralog B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-57175457-2	chr2	57175357	57175557	+	799.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_040356, intron 1 of 2)	intron (NR_040356, intron 1 of 2)	6297.0	NR_040356	767815.0	Mm.188065	NR_040356	ENSMUSG00000084938	BB557941	-	expressed sequence BB557941	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94569126-4	chr10	94568994	94569194	+	865.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359760, intron 1 of 3)	intron (NM_001359760, intron 1 of 3)	-6163.0	NM_001168684	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-44395789-3	chr11	44395666	44395866	+	897.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4297.0	NM_001303244	16160.0	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-22356595-3	chr10	22356487	22356687	+	641.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009018, intron 6 of 6)	intron (NM_009018, intron 6 of 6)	-5307.0	NM_020030	56554.0	Mm.458004	NM_020030	ENSMUSG00000078452	Raet1d	RAE-1delta	retinoic acid early transcript delta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-33856060-2	chr7	33855960	33856160	+	574.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	88925.0	NM_178308	110187.0	Mm.155750	NM_178308	ENSMUSG00000066586	Scgb2b26	Abpbg26|Abpbg4|Abpg|C2d|Scgb2b4	secretoglobin, family 2B, member 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116069006-2	chr11	116068906	116069106	+	641.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001009573, intron 21 of 32)	intron (NM_001009573, intron 21 of 32)	8955.0	NM_001009573	70450.0	Mm.259460	NM_001009573	ENSMUSG00000057948	Unc13d	2610108D09Rik|Jinx|Munc13-4|mFLJ00067	unc-13 homolog D (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-163433998-3	chr2	163433914	163434114	+	838.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4453.0	NM_144891	228858.0	Mm.102080	NM_144891	ENSMUSG00000017943	Gdap1l1	Gdap1l	ganglioside-induced differentiation-associated protein 1-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-89303094-2	chr15	89302994	89303194	+	668.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001170561, exon 19 of 41)	exon (NM_001170561, exon 19 of 41)	2638.0	NR_105924	102465981.0		NR_105924	ENSMUSG00000098442	Mir6959	Gm27807|mmu-mir-6959	microRNA 6959	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84104193-2	chr8	84104093	84104293	+	748.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_172502, intron 1 of 12)	intron (NM_172502, intron 1 of 12)	604.0	NM_001357322	212123.0	Mm.260557	NM_172502	ENSMUSG00000037103	Dcaf15	6720484B16	DDB1 and CUL4 associated factor 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-54558877-2	chr9	54558777	54558977	+	578.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019686, intron 1 of 5)	intron (NM_019686, intron 1 of 5)	1202.0	NM_019686	56506.0	Mm.42192	NM_019686	ENSMUSG00000037493	Cib2	2810434I23Rik|AI449053	calcium and integrin binding family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-74341475-7	chr17	74341370	74341570	+	909.414307	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357738, intron 1 of 15)	intron (NM_001357738, intron 1 of 15)	2483.0	NM_016962	50850.0	Mm.19804	NM_016962	ENSMUSG00000024068	Spast	Spg4|mKIAA1083	spastin	protein-coding	0.695370645008427	1.68122653021124	2.49326886238047	0.732828833569715	1.31757005397213	0.786408833331967	2.51631550604317	0.736618360761428	-0.15780020277745	0.94950349287156	0.998431161219273
Merged-chr12-72086584-2	chr12	72086484	72086684	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205067, intron 1 of 6)	B1_Mus2|SINE|Alu	745.0	NM_024205	104771.0	Mm.258935	NM_024205	ENSMUSG00000005078	Jkamp	1200003C05Rik|2310047L11Rik|Jamp	JNK1/MAPK8-associated membrane protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-85141853-2	chr11	85141753	85141953	+	736.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1898.0	NM_001029934	237898.0	Mm.178524	NM_001029934	ENSMUSG00000000804	Usp32	2900074J03Rik|6430526O11Rik|AW045245	ubiquitin specific peptidase 32	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-45457544-3	chr13	45457403	45457603	+	959.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49941.0	NM_025508	66355.0	Mm.290802	NM_025508	ENSMUSG00000000253	Gmpr	2310004P21Rik|AV028449|GMPR 1	guanosine monophosphate reductase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-107581439-2	chr11	107581347	107581547	+	598.0	f0_c57.idr|f1_c57bl6.idr	intron (NM_198298, intron 4 of 31)	intron (NM_198298, intron 4 of 31)	33487.0	NM_198298	78455.0	Mm.272047	NM_198298	ENSMUSG00000020721	Helz	3110078M01Rik|9430093I07Rik|9630002H22Rik|AI851979|DRHC	helicase with zinc finger domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-77536922-4	chr10	77536809	77537009	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008404, intron 1 of 15)	MTD|LTR|ERVL-MaLR	6561.0	NM_008404	16414.0	Mm.1137	NM_008404	ENSMUSG00000000290	Itgb2	2E6|AI528527|Cd18|LAD|LCAMB|Lfa1|MF17	integrin beta 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-137410655-4	chr7	137410530	137410730	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029886, intron 1 of 3)	CpG	126.0	NM_029886	77252.0	Mm.29184	NM_029886	ENSMUSG00000040139	9430038I01Rik	-	RIKEN cDNA 9430038I01 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115137723-3	chr5	115137641	115137841	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-2766.0	NM_175352	106840.0	Mm.29241	NM_175352	ENSMUSG00000046562	Unc119b	AA407659|AI414892	unc-119 lipid binding chaperone B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-131246848-2	chr6	131246739	131246939	+	742.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008462, intron 1 of 7)	RSINE1|SINE|B4	523.0	NM_001170851	16633.0	Mm.4783	NM_008462	ENSMUSG00000030187	Klra2	Klra30|Ly49b	killer cell lectin-like receptor, subfamily A, member 2	protein-coding	2.68085984273803	3.00686964275752	2.44411434803413	2.2573561863464	1.31456451896089	2.11916414755073	2.57335043399084	2.13719965765989	-1.1443400304899	0.192925017570049	0.671840468500035
Merged-chr10-121459270-4	chr10	121459184	121459384	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138956, intron 1 of 4)	intron (NM_138956, intron 1 of 4)	16966.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	2.23010286667531	3.50968664449759	2.4307354276085	2.70110435963162	2.24993962621507	2.38806037967284	3.29511399064458	1.39273055857793	-0.569118429517997	0.509013712735911	0.944112108431226
Merged-chr9-40733545-4	chr9	40733480	40733680	+	984.708374	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133733, intron 1 of 6)	intron (NM_133733, intron 1 of 6)	47616.0	NM_133733	71566.0	Mm.280560	NM_133733	ENSMUSG00000032024	Clmp	9030425E11Rik|ACAM|ASP5|AW557819	CXADR-like membrane protein	protein-coding	-1.5374591315858	-1.50584429756967	-1.5154048843228	-1.52325823494024	-1.24909732825793	-1.35334080236643	-1.51324057704399	-1.52185248893451	1.98126694062257	0.567575466249438	1
Merged-chr13-51845192-3	chr13	51845104	51845304	+	882.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1471.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56268211-2	chr17	56268111	56268311	+	724.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8556.0	NM_174989	106759.0	Mm.203952	NM_174989	ENSMUSG00000047123	Ticam1	AW046014|AW547018|TICAM-1|TRIF	toll-like receptor adaptor molecule 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-37719979-3	chr1	37719924	37720124	+	884.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028096)	promoter-TSS (NM_028096)	-213.0	NM_028096	72097.0	Mm.142607	NM_028096	ENSMUSG00000026090	2010300C02Rik	-	RIKEN cDNA 2010300C02 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-60843729-2	chr2	60843629	60843829	+	744.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	37709.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135487746-2	chr5	135487646	135487846	+	700.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146001, intron 1 of 30)	intron (NM_146001, intron 1 of 30)	57376.0	NM_146001	215114.0	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-136612057-2	chr1	136611957	136612157	+	594.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12844.0	NM_177643	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-116189554-4	chr3	116189434	116189634	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59846.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-80758597-4	chr1	80758533	80758733	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175291)	promoter-TSS (NM_175291)	-80.0	NM_175291	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-121886984-2	chr3	121886884	121887084	+	788.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(C)n|Simple_repeat|Simple_repeat	-66245.0	NM_172525	214137.0	Mm.229287	NM_172525	ENSMUSG00000039831	Arhgap29	6720461J18Rik|A830014I19|AU040217|B130017I01Rik|C76601|Parg1	Rho GTPase activating protein 29	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-33746294-4	chr17	33746189	33746389	+	953.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008997, exon 5 of 5)	3' UTR (NM_008997, exon 5 of 5)	14197.0	NM_008997	19326.0	Mm.387587	NM_008997	ENSMUSG00000077450	Rab11b	A730055L17Rik	RAB11B, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-68206058-2	chr8	68205957	68206157	+	646.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70471.0	NM_028182	72281.0	Mm.40974	NM_028182	ENSMUSG00000053886	Sh2d4a	2210402M20Rik|SH2A	SH2 domain containing 4A	protein-coding	-0.0124234615372952	0.00628417003294085	0.594496399229248	0.826754736697424	0.276166495332507	0.00765624728300146	0.0015301586181051	-0.00371658108279768	-2.52838067822236	0.261140844203433	1
Merged-chr9-65829651-2	chr9	65829551	65829751	+	894.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_019797, exon 16 of 16)	3' UTR (NM_019797, exon 16 of 16)	-2087.0	NM_172536	214812.0	Mm.139231	NM_172536	ENSMUSG00000040524	Zfp609	9830165N24|BC016271|Znf609|mKIAA0295	zinc finger protein 609	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128674868-2	chr10	128674768	128674968	+	920.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173733)	promoter-TSS (NM_173733)	-950.0	NM_173733	211389.0	Mm.23352	NM_173733	ENSMUSG00000049858	Suox	SO	sulfite oxidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-69904345-2	chr8	69904219	69904419	+	905.166626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_032004)	TTS (NM_032004)	-1761.0	NM_023312	67184.0	Mm.21162	NM_023312	ENSMUSG00000036199	Ndufa13	2700054G14Rik|AU022060|CDA016|CGI-39|GRIM-19|Grim19	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 13	protein-coding	2.17639709537155	1.6581982733597	1.15107809565021	2.20807563661246	1.31422572087593	1.45259767596691	2.3919381091384	2.62314744849097	0.518180894206668	0.632812447240809	0.982230082053879
Merged-chr5-118737790-2	chr5	118737690	118737890	+	669.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347445, intron 14 of 30)	intron (NM_001347445, intron 14 of 30)	177071.0	NM_172424	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-55486429-3	chr12	55486326	55486526	+	946.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	6221.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-91651686-1	chr15	91651586	91651786	+	610.0	f0_balb.idr	Intergenic	Intergenic	-21538.0	NM_025730	66725.0	Mm.37558	NM_025730	ENSMUSG00000036273	Lrrk2	4921513O20Rik|9330188B09Rik|AW561911|D630001M17Rik|Gm927|cI-46	leucine-rich repeat kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-125455852-2	chr1	125455752	125455952	+	672.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TA)n|Simple_repeat|Simple_repeat	-20125.0	NM_001205385	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35076205-2	chr17	35076105	35076305	+	701.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027366)	promoter-TSS (NM_027366)	-737.0	NM_027366	70274.0	Mm.250491	NM_027366	ENSMUSG00000013766	Ly6g6e	2310011I02Rik|G6e	lymphocyte antigen 6 complex, locus G6E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-24708615-4	chr12	24708488	24708688	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009104, exon 2 of 10)	exon (NM_009104, exon 2 of 10)	334.0	NM_009104	20135.0	Mm.99	NM_009104	ENSMUSG00000020649	Rrm2	AA407299|R2	ribonucleotide reductase M2	protein-coding	2.48072383488814	3.03352170963231	1.59008513310631	2.77675560564292	2.32320725554696	1.37376317036121	2.15392462768354	2.08638672462209	-1.20353505485228	0.191331791228578	0.66966064502007
Merged-chr3-136784000-2	chr3	136783900	136784100	+	967.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008913, intron 1 of 13)	intron (NM_008913, intron 1 of 13)	113934.0	NM_001293622	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-60857805-2	chr1	60857731	60857931	+	675.0	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51194.0	NM_009843	12477.0	Mm.390	NM_009843	ENSMUSG00000026011	Ctla4	Cd152|Ctla-4|Ly-56	cytotoxic T-lymphocyte-associated protein 4	protein-coding	1.47938393810935	1.824489053763	1.00077516451055	2.55426317955005	2.10560913104651	1.02905706729967	1.25335906087269	1.71255688155752	-0.697880874643646	0.563050496201707	0.960362415684079
Merged-chr2-165914493-4	chr2	165914412	165914612	+	970.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29674.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	3.5792871854208	3.22048896029299	4.20652226552597	4.09439644949368	4.38512133066718	3.96804600942359	4.78659672800948	4.22293151763118	0.730325575703175	0.110319776395012	0.520562405815689
Merged-chr18-65692344-4	chr18	65692245	65692445	+	951.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5923.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	4.34730749823611	3.37846365327142	3.46103484859246	3.60861729505643	4.11319487530081	3.50992288878657	3.57753430685896	3.69928220475949	-0.0295145650883642	0.954200628196294	0.998431161219273
Merged-chr1-36309787-4	chr1	36309722	36309922	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290727, intron 1 of 5)	intron (NM_001290727, intron 1 of 5)	2089.0	NM_001172205	214855.0	Mm.34316	NM_145996	ENSMUSG00000037447	Arid5a	D430024K22Rik|Mrf1	AT rich interactive domain 5A (MRF1-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-128806178-4	chr4	128806096	128806296	+	869.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081098)	promoter-TSS (NM_001081098)	-84.0	NM_001081098	230761.0	Mm.22616	NM_001081098	ENSMUSG00000028799	Zfp362	-	zinc finger protein 362	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-19939419-4	chr10	19939318	19939518	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008580, intron 1 of 29)	intron (NM_008580, intron 1 of 29)	4892.0	NM_008580	26408.0	Mm.6595	NM_008580	ENSMUSG00000071369	Map3k5	7420452D20Rik|ASK|ASK1|MAPKKK5|Mekk5	mitogen-activated protein kinase kinase kinase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-41260240-1	chr3	41260140	41260340	+	823.0	f0_balb.idr	Intergenic	Intergenic	-177194.0	NM_027558	70804.0	Mm.40321	NM_027558	ENSMUSG00000049940	Pgrmc2	4631434O19Rik|5730409G06Rik|DG6|PMBP	progesterone receptor membrane component 2	protein-coding	-0.953721354153451	-1.41025554057125	-1.42001056191158	-1.42802362688808	-1.44024889148474	-1.40814158675276	-1.41780223890411	-1.42658929208844	-2.11310844444413	0.543369238581748	1
Merged-chr13-48528697-4	chr13	48528600	48528800	+	990.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7414.0	NR_029656	387247.0		NR_029656	ENSMUSG00000065453	Mirlet7d	Mirnlet7d|let-7d|mmu-let-7d	microRNA let7d	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-88750713-3	chr15	88750644	88750844	+	796.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181412)	promoter-TSS (NM_181412)	-967.0	NM_181412	223773.0	Mm.396622	NM_181412	ENSMUSG00000034333	Zbed4	1700009F06Rik	zinc finger, BED type containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-88008399-4	chr1	88008308	88008508	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033291, intron 1 of 27)	CpG	143.0	NM_001198573	227334.0	Mm.80484	NM_001033291	ENSMUSG00000005501	Usp40	B230215L03Rik|C730029K03	ubiquitin specific peptidase 40	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102440834-3	chr12	102440727	102440927	+	858.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1014.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-36606724-4	chr15	36606594	36606794	+	941.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008774, intron 1 of 14)	intron (NM_008774, intron 1 of 14)	2279.0	NM_008774	18458.0	Mm.371570	NM_008774	ENSMUSG00000022283	Pabpc1	PABP|Pabp1|PabpI|Pabpl1|ePAB	poly(A) binding protein, cytoplasmic 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-5991362-1	chr11	5991262	5991462	+	572.0	f1_balb.idr	intron (NM_001174054, intron 6 of 20)	intron (NM_001174054, intron 6 of 20)	35604.0	NM_019661	56418.0	Mm.294821	NM_019661	ENSMUSG00000002741	Ykt6	0610042I15Rik|1810013M05Rik|AW105923	YKT6 v-SNARE homolog (S. cerevisiae)	protein-coding	0.149297252864817	0.00935457904535905	0.00246555827948239	-0.00288907087688353	0.860461294379228	0.80758778510195	0.00398987438111589	-0.00195107700319652	3.40292899321756	0.118011546828513	1
Merged-chr4-119981147-1	chr4	119981047	119981247	+	1000.0	f1_c57bl6.idr	intron (NM_010657, intron 1 of 8)	intron (NM_010657, intron 1 of 8)	166469.0	NM_010657	16656.0	Mm.302758	NM_010657	ENSMUSG00000028634	Hivep3	2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3	human immunodeficiency virus type I enhancer binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-101157480-2	chr9	101157380	101157580	+	883.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161362, intron 6 of 13)	Lx7|LINE|L1	41593.0	NM_172144	235542.0	Mm.335386	NM_172144	ENSMUSG00000043154	Ppp2r3a	3222402P14Rik|A730042E07	protein phosphatase 2, regulatory subunit B'', alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-99200645-2	chr14	99200545	99200745	+	833.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_029320, intron 14 of 17)	intron (NM_029320, intron 14 of 17)	-98046.0	NM_009769	12224.0	Mm.30262	NM_009769	ENSMUSG00000005148	Klf5	4930520J07Rik|Bteb2|CKLF|IKLF	Kruppel-like factor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-30709952-4	chr5	30709852	30710052	+	863.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1612.0	NM_001356949	65254.0	Mm.27732	NM_023047	ENSMUSG00000029168	Dpysl5	CRAM|CRMP-5|Crmp5	dihydropyrimidinase-like 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-110285325-2	chr5	110285225	110285425	+	963.6999509999999	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011132)	promoter-TSS (NM_011132)	843.0	NM_008993	19301.0	Mm.21853	NM_008993	ENSMUSG00000029499	Pxmp2	22kDa|PMP22	peroxisomal membrane protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-136451085-4	chr6	136450988	136451188	+	975.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35519.0	NM_001201390	100502936.0	Mm.21182	NM_001201390	ENSMUSG00000045291	E330021D16Rik	C85549	RIKEN cDNA E330021D16 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-14725199-4	chr9	14725061	14725261	+	969.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177905, intron 8 of 18)	intron (NM_177905, intron 8 of 18)	15572.0	NM_177905	330890.0	Mm.334969	NM_177905	ENSMUSG00000036912	Piwil4	9230101H05Rik|Miwi2	piwi-like RNA-mediated gene silencing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-87832390-2	chr3	87832290	87832490	+	682.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19A|LTR|ERVK	-14365.0	NM_001025571	27371.0	Mm.86361	NM_021309	ENSMUSG00000028071	Sh2d2a	Lad|Ribp|Tsad	SH2 domain containing 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-47661629-2	chr5	47661529	47661729	+	719.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2B2|LINE|L1	-321526.0	NR_111900	20563.0	Mm.289739	NM_178804	ENSMUSG00000031558	Slit2	Drad-1|E030015M03Rik|E130320P19Rik|Slil3|b2b1200.1Clo|mKIAA4141|slit-2	slit guidance ligand 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-82463988-1	chr18	82463888	82464088	+	540.0	f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	-11135.0	NM_001025245	17196.0	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153492259-2	chr2	153492159	153492359	+	634.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001134300, intron 1 of 10)	intron (NM_001134300, intron 1 of 10)	37712.0	NM_001134300	329540.0	Mm.50600	NM_001001986	ENSMUSG00000061411	Nol4l	4931410H15|8430427H17Rik|AI429157|Gm1636	nucleolar protein 4-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-156460462-2	chr1	156460362	156460562	+	833.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_009230, intron 2 of 15)	PB1D7|SINE|Alu	13866.0	NM_009230	20652.0	Mm.28099	NM_009230	ENSMUSG00000026600	Soat1	8430426K15Rik|ACAT-1|AW550831|Acact|ald|hid	sterol O-acyltransferase 1	protein-coding	0.858706606811972	2.0559175312741	0.901931260495433	1.29375733180436	1.8170248758405	2.07347789257458	0.906402848567983	1.71663132307703	0.942584021646951	0.479665391537702	0.928229898011185
Merged-chr13-100015679-4	chr13	100015557	100015757	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030026)	promoter-TSS (NM_030026)	-18.0	NM_030026	78038.0	Mm.137327	NM_030026	ENSMUSG00000021646	Mccc2	4930552N12Rik|MCCB	methylcrotonoyl-Coenzyme A carboxylase 2 (beta)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80270075-2	chr7	80269975	80270175	+	981.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_178070, exon 1 of 23)	exon (NM_178070, exon 1 of 23)	420.0	NM_178070	233405.0	Mm.322870	NM_178070	ENSMUSG00000030534	Vps33b	-	vacuolar protein sorting 33B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134432906-3	chr6	134432790	134432990	+	693.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355686, intron 5 of 5)	intron (NM_001355686, intron 5 of 5)	18462.0	NM_001355686	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	2.00255712055326	1.20734739161259	1.63369639831777	0.947231524968407	1.71313187992648	0.980627749474937	1.64730419059234	1.59380198744391	-0.0268282152029061	0.983068584376427	0.998431161219273
Merged-chr9-44194155-3	chr9	44194078	44194278	+	781.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007619, intron 2 of 15)	intron (NM_007619, intron 2 of 15)	39868.0	NM_007619	12402.0	Mm.266871	NM_007619	ENSMUSG00000034342	Cbl	4732447J05Rik|Cbl-2|c-Cbl|cbl	Casitas B-lineage lymphoma	protein-coding	-1.20406370813143	-1.56956373024278	-1.57884638916872	-1.58647144159385	-1.598104728449	-1.56755213932999	-1.57674499865798	-1.58510656085539	-1.70745470802464	0.626337835847419	1
Merged-chr18-74191101-2	chr18	74191001	74191201	+	697.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16717.0	NM_001164355	66468.0	Mm.283406	NM_025581	ENSMUSG00000036223	Ska1	2810433K01Rik|AV117428	spindle and kinetochore associated complex subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6241530-4	chr19	6241390	6241590	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_194348)	promoter-TSS (NM_194348)	-178.0	NM_194348	329015.0	Mm.277384	NM_194348	ENSMUSG00000024773	Atg2a	1810013C15Rik|A830054M12|BC023754|mKIAA0404	autophagy related 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-89626670-2	chr17	89626570	89626770	+	608.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3C|LINE|L1	247429.0	NR_045952	100043904.0	Mm.396198	NR_045952		Gm4719	-	predicted gene 4719	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-34082379-2	chr11	34082279	34082479	+	594.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010696, intron 15 of 20)	intron (NM_010696, intron 15 of 20)	16175.0	NR_155520	76874.0	Mm.437529	NR_155520		4930469K13Rik	-	RIKEN cDNA 4930469K13 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-73550745-2	chr2	73550645	73550845	+	832.375	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21258.0	NM_153138	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-88482242-3	chr7	88482130	88482330	+	948.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028238, intron 2 of 2)	intron (NM_028238, intron 2 of 2)	51957.0	NM_028238	72433.0	Mm.276669	NM_028238	ENSMUSG00000030559	Rab38	2310011F14Rik|AU043391|cht	RAB38, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-10153081-3	chr17	10152984	10153184	+	906.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	166277.0	NM_021881	19317.0	Mm.130694	NM_021881	ENSMUSG00000062078	Qk	1110003F05Rik|1500005P18|QkI|l(17)-1Wis|l17Wis1	quaking	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91968179-3	chr2	91968079	91968279	+	891.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4616.0	NM_138306	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53092753-3	chr4	53092678	53092878	+	724.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013454, exon 9 of 50)	exon (NM_013454, exon 9 of 50)	67117.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167373322-2	chr2	167373222	167373422	+	850.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24144.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31582854-2	chr14	31582754	31582954	+	716.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5471.0	NM_009937	382864.0	Mm.239821	NM_009937	ENSMUSG00000057606	Colq	A130034K24Rik	collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-34389727-4	chr7	34389644	34389844	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360654)	promoter-TSS (NM_001360654)	-39.0	NM_025948	67070.0	Mm.276503	NM_025948	ENSMUSG00000066568	Lsm14a	2700023B17Rik|AA407828|AU017544|Tral|mRAP55A	LSM14A mRNA processing body assembly factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-54686811-4	chr14	54686691	54686891	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_023190, exon 1 of 19)	5' UTR (NM_023190, exon 1 of 19)	140.0	NM_001085473	56215.0	Mm.297078	NM_019567	ENSMUSG00000022185	Acin1	2610036I19Rik|2610510L13Rik|Acinus|Acn|C79325|acinusL|acinusS|mKIAA0670	apoptotic chromatin condensation inducer 1	protein-coding	0.0796469045940926	0.168801191299756	1.70025087870266	0.1196137068399	0.0858647702276956	0.174632297684914	2.67582065163603	0.123585900793679	1.74450842529585	0.594308481040613	0.9706660979479
Merged-chr17-73942403-4	chr17	73942316	73942516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011723, intron 2 of 35)	intron (NM_011723, intron 2 of 35)	7780.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119259167-2	chr11	119259074	119259274	+	693.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_175430, intron 16 of 18)	B4|SINE|B4	-8789.0	NM_001159324	14387.0	Mm.4793	NM_008064	ENSMUSG00000025579	Gaa	E430018M07Rik	glucosidase, alpha, acid	protein-coding	0.919102119025991	0.870196748522145	1.1259097764035	1.44799784237225	0.800660516512307	1.40262400709895	0.677159344363954	0.670351754737973	-0.9155869357879	0.541534053175088	0.954866069207078
Merged-chr5-149284934-4	chr5	149284816	149285016	+	909.275024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009663, intron 3 of 4)	MTD|LTR|ERVL-MaLR	19912.0	NM_009663	11690.0	Mm.19844	NM_009663	ENSMUSG00000060063	Alox5ap	Flap	arachidonate 5-lipoxygenase activating protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80329364-3	chr10	80329301	80329501	+	901.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008793)	promoter-TSS (NM_008793)	72.0	NM_008793	18551.0	Mm.299916	NM_008793	ENSMUSG00000020131	Pcsk4	AI647044|L21221|NEC 3|NEC3|PC4|SPC5	proprotein convertase subtilisin/kexin type 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-98803046-2	chr7	98802946	98803146	+	556.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-32066.0	NM_001285794	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-31525694-2	chr19	31525594	31525794	+	622.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013833, intron 2 of 17)	intron (NM_001013833, intron 2 of 17)	138676.0	NM_011160	19091.0	Mm.381170	NM_011160	ENSMUSG00000052920	Prkg1	AW125416|CGKI|Gm19690|Prkg1b|Prkgr1b	protein kinase, cGMP-dependent, type I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88684511-2	chr3	88684411	88684611	+	805.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1276.0	NM_028814	74200.0	Mm.251800	NM_028814	ENSMUSG00000028060	2810403A07Rik	A430106P18Rik|AI256352|AI451678|Blom7|Khdc4|Kiaa0907	RIKEN cDNA 2810403A07 gene	protein-coding	2.35217244168222	2.35027255732549	2.04255373611071	1.85715685747013	2.02053774385809	1.80973559106796	2.05751645559926	1.99858116897688	-0.524972050209935	0.557746526479022	0.960321604678676
Merged-chr9-72110707-2	chr9	72110607	72110807	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253865, intron 2 of 14)	intron (NM_001253865, intron 2 of 14)	494.0	NM_001253862	21406.0	Mm.171615	NM_011544	ENSMUSG00000032228	Tcf12	A130037E08Rik|ALF1|HEB|HEBAlt|HTF-4|HTF4|ME1|REB|bHLHb20	transcription factor 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-5502516-2	chr2	5502416	5502616	+	574.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290375, intron 2 of 10)	(TG)n|Simple_repeat|Simple_repeat	123126.0	NR_030601	100124465.0		NR_030601	ENSMUSG00000078031	Mir466d	Mirn466d	microRNA 466d	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-154904672-4	chr4	154904576	154904776	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR16|LTR|ERVK	-5633.0	NM_025582	66469.0	Mm.41868	NM_025582	ENSMUSG00000029059	Fam213b	2810405K02Rik|AI836168|PM/PGFS	family with sequence similarity 213, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-80100067-4	chr17	80099965	80100165	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27406.0	NM_176963	319625.0	Mm.29098	NM_176963	ENSMUSG00000035473	Galm	A530057M15Rik|AU015645|AU020959	galactose mutarotase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100548825-2	chr11	100548725	100548925	+	573.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028918, intron 1 of 11)	intron (NM_028918, intron 1 of 11)	3193.0	NM_028918	74407.0	Mm.31590	NM_028918	ENSMUSG00000006784	Ttc25	4933404O19Rik	tetratricopeptide repeat domain 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100323780-4	chr11	100323670	100323870	+	948.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3821.0	NM_011508	20918.0	Mm.13886	NM_011508	ENSMUSG00000035530	Eif1	Sui1-rs1	eukaryotic translation initiation factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128439073-4	chr2	128438972	128439172	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9721.0	NR_028590	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	-1.23826193677681	-1.21241040182355	-1.22270105026776	-0.934241458926562	-1.23783648736863	-1.21018037537722	-1.22037147302458	-0.929982742503718	0.0323590357436516	0.9924297640193	1
Merged-chr3-51415377-4	chr3	51415304	51415504	+	902.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053089)	promoter-TSS (NM_053089)	-612.0	NM_053089	74838.0	Mm.275281	NM_053089	ENSMUSG00000063273	Naa15	5730450D16Rik|6330400I15|ASTBDN|Narg1|Tbdn-1|mNAT1	N(alpha)-acetyltransferase 15, NatA auxiliary subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-65884975-4	chr17	65884873	65885073	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001198949)	promoter-TSS (NM_001198949)	-50.0	NM_001198949	19765.0	Mm.17009	NM_009067	ENSMUSG00000024096	Ralbp1	RLIP76|Rip1	ralA binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-36776221-2	chr16	36776124	36776324	+	586.75	f0_balb.idr|f1_balb.idr	intron (NM_001145899, intron 3 of 6)	intron (NM_001145899, intron 3 of 6)	8738.0	NM_001145899	57738.0	Mm.281804	NM_021301	ENSMUSG00000022899	Slc15a2	8430408C16Rik|C78862|Pept2	solute carrier family 15 (H+/peptide transporter), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-119423964-4	chr8	119423861	119424061	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13201.0	NM_027950	71839.0	Mm.272357	NM_027950	ENSMUSG00000074063	Osgin1	1700012B18Rik|Okl38	oxidative stress induced growth inhibitor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132380958-4	chr4	132380852	132381052	+	898.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161797, intron 3 of 12)	intron (NM_001161797, intron 3 of 12)	-27266.0	NR_003270	399101.0	Mm.486919	NR_002904	ENSMUSG00000085241	Snhg3	Rnu17d|U17HG	small nucleolar RNA host gene 3	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-43265995-4	chr17	43265889	43266089	+	904.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-4358.0	NM_133776	77596.0	Mm.159950	NM_133776	ENSMUSG00000041293	Adgrf1	5031409J19Rik|Gpr110|KPG_009	adhesion G protein-coupled receptor F1	protein-coding	2.1539663753021	1.14146857121324	2.35113553888237	1.09148541717619	1.46379242240852	2.35823929884111	2.54357380933716	1.53708572684808	0.608592062318172	0.590385945338509	0.969416194987468
Merged-chr11-5061181-2	chr11	5061081	5061281	+	641.833374	f1_balb.idr|f1_c57bl6.idr	TTS (NM_145216)	TTS (NM_145216)	3053.0	NM_145216	75668.0	Mm.374836	NM_145216	ENSMUSG00000034209	Rasl10a	2210403B10Rik|AI852688	RAS-like, family 10, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-79484850-2	chr3	79484750	79484950	+	797.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162999, intron 12 of 16)	intron (NM_001162999, intron 12 of 16)	82829.0	NM_001162999	329679.0	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80697447-2	chr10	80697347	80697547	+	693.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172457, intron 1 of 3)	intron (NM_172457, intron 1 of 3)	4373.0	NM_172457	208228.0	Mm.49309	NM_172457	ENSMUSG00000003348	Mob3a	5330417K06Rik|A630029F06|AV218468|Mobkl2a	MOB kinase activator 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-94348143-4	chr11	94348067	94348267	+	940.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029600, intron 29 of 30)	intron (NM_029600, intron 29 of 30)	20166.0	NM_146024	71452.0	Mm.141054	NM_027799	ENSMUSG00000020864	Ankrd40	1110011C06Rik|5530600A18Rik|Gcap15	ankyrin repeat domain 40	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111514250-1	chr12	111514150	111514350	+	574.0	f1_c57bl6.idr	Intergenic	Intergenic	-23851.0	NM_178041	217869.0	Mm.271222	NM_173363	ENSMUSG00000021282	Eif5	2810011H21Rik|D12Ertd549e	eukaryotic translation initiation factor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-40454564-3	chr6	40454481	40454681	+	637.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201370, intron 4 of 11)	intron (NM_201370, intron 4 of 11)	11718.0	NM_201370	381759.0	Mm.20593	NM_201370	ENSMUSG00000037159	Wee2	Gm1065|Wee1B	WEE1 homolog 2 (S. pombe)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-124658558-2	chr2	124658458	124658658	+	689.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_172537, exon 12 of 17)	exon (NM_172537, exon 12 of 17)	4977.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-116444422-4	chr7	116444353	116444553	+	834.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011083)	promoter-TSS (NM_011083)	-995.0	NM_011083	18704.0	Mm.3810	NM_011083	ENSMUSG00000030660	Pik3c2a	Cpk-m|PI3KC2	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-153411477-2	chr1	153411377	153411577	+	888.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_033736, intron 1 of 3)	B1_Mus2|SINE|Alu	2756.0	NR_033736	626058.0	Mm.31556	NM_001177359		E330020D12Rik	EG626058|F430003O07Rik|Gm6648	Riken cDNA E330020D12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-165576162-2	chr1	165576062	165576262	+	603.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357427, intron 33 of 33)	intron (NM_001357427, intron 33 of 33)	58379.0	NM_001001880	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27675620-2	chr17	27675520	27675720	+	851.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286744, intron 1 of 9)	intron (NM_001286744, intron 1 of 9)	-9619.0	NM_178365	23969.0	Mm.4926	NM_011861	ENSMUSG00000040276	Pacsin1	A830061D09Rik|H74|mKIAA1379|syndapin	protein kinase C and casein kinase substrate in neurons 1	protein-coding	0.0767892419403203	0.0942144396939696	0.540173546116579	0.0841033437370946	0.458291406477387	0.29108316757505	0.765656981631875	0.0848728061918932	1.54686312638343	0.454846072875974	1
Merged-chr9-65490981-2	chr9	65490881	65491081	+	564.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28280.0	NM_001357813	27965.0	Mm.272475	NM_138584	ENSMUSG00000032388	Spg21	ACP33|BM-019|C78576|D9Wsu18e|GL010|MAST	SPG21, maspardin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-156725536-3	chr2	156725433	156725633	+	942.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042487, intron 1 of 6)	intron (NM_001042487, intron 1 of 6)	4254.0	NM_001042487	228836.0	Mm.22094	NM_146128	ENSMUSG00000061689	Dlgap4	AI225853|BC024558|DAP-4|DAP4|SAPAP-4|Sapap4|WBP16	DLG associated protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-55254081-4	chr9	55253972	55254172	+	988.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_032002, intron 3 of 7)	LTR37-int|LTR|ERV1	29553.0	NM_032002	83961.0	Mm.443874	NM_032002	ENSMUSG00000032311	Nrg4	AI552600	neuregulin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30712155-4	chr2	30712049	30712249	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-9061.0	NR_037272	100526499.0		NR_037272	ENSMUSG00000093091	Mir3089	mir-3089|mmu-mir-3089	microRNA 3089	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-108347803-4	chr9	108347713	108347913	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311157)	promoter-TSS (NM_001311157)	-18.0	NM_001311157	22258.0	Mm.3974	NM_011678	ENSMUSG00000032612	Usp4	F730026I20Rik|Unp|mKIAA4155	ubiquitin specific peptidase 4 (proto-oncogene)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-19967197-4	chr16	19967103	19967303	+	770.94165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183390, intron 1 of 6)	ORR1E|LTR|ERVL-MaLR	15846.0	NM_183390	239743.0	Mm.86699	NM_183390	ENSMUSG00000043008	Klhl6	-	kelch-like 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24739939-1	chr17	24739839	24740039	+	677.0	f1_c57bl6.idr	intron (NM_013759, intron 2 of 4)	intron (NM_013759, intron 2 of 4)	3346.0	NM_001346668	27361.0	Mm.28212	NM_013759	ENSMUSG00000075705	Msrb1	D17Wsu82e|SELX|SelR|Sepr|Sepx1	methionine sulfoxide reductase B1	protein-coding	1.73267998286247	3.34701206097668	1.70434025517721	2.89446325894558	2.76246835289001	1.78434060085588	1.4850301790653	1.16128823758248	-1.34128538979904	0.185605376337034	0.661584463841868
Merged-chr4-134929812-4	chr4	134929703	134929903	+	920.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1177.0	NM_026780	68592.0	Mm.29989	NM_026780	ENSMUSG00000028821	Syf2	1110018L13Rik|Cbpin|D4Bwg1551e|Gcipip|Ntc31|mp29|p29	SYF2 homolog, RNA splicing factor (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-88490462-4	chr15	88490356	88490556	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-109846.0	NM_027306	70073.0	Mm.45306	NM_027306	ENSMUSG00000054117	Zdhhc25	1700030J15Rik	zinc finger, DHHC domain containing 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-86943491-3	chr4	86943398	86943598	+	992.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR31A_Mm|LTR|ERVK	69084.0	NM_139306	230379.0	Mm.45019	NM_139306	ENSMUSG00000038007	Acer2	2410116I05Rik|Asah3l|CRG-L1|maCER2	alkaline ceramidase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101468087-4	chr11	101467990	101468190	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009708)	promoter-TSS (NM_009708)	-85.0	NM_009708	11858.0	Mm.378883	NM_009708	ENSMUSG00000001313	Rnd2	Arhn|Rohn|rho7	Rho family GTPase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30418985-3	chr7	30418907	30419107	+	855.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011827, intron 1 of 3)	RMER4B|LTR|ERVK	847.0	NM_011827	23900.0	Mm.379050	NM_011827	ENSMUSG00000064109	Hcst	DAP10|KAP10	hematopoietic cell signal transducer	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-17839751-4	chr5	17839640	17839840	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159558, intron 1 of 15)	intron (NM_001159558, intron 1 of 15)	-3844.0	NM_007643	12491.0	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 molecule	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-11011303-2	chr16	11011203	11011403	+	821.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_040518, intron 1 of 2)	intron (NR_040518, intron 1 of 2)	2405.0	NR_040518	100043147.0	Mm.489001	NR_040518	ENSMUSG00000097056	Gm4262	-	predicted gene 4262	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-77533548-2	chr15	77533448	77533648	+	583.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175391)	promoter-TSS (NM_175391)	-233.0	NM_175391	108956.0	Mm.86391	NM_175391	ENSMUSG00000044309	Apol7c	2210421G13Rik	apolipoprotein L 7c	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-10869589-4	chr18	10869494	10869694	+	894.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB3|LINE|L1	-84042.0	NR_029781	723959.0		NR_029781	ENSMUSG00000106348	Mir1a-2	Mir1-2|Mirn1-2|mir-1a-2|mmu-mir-1-2|mmu-mir-1a-2	microRNA 1a-2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-75062317-4	chr15	75062201	75062401	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13464.0	NM_001252056	17067.0	Mm.1583	NM_010741	ENSMUSG00000079018	Ly6c1	AA682074|AA959465|Ly-6C|Ly-6C1|Ly6c	lymphocyte antigen 6 complex, locus C1	protein-coding	4.50219469874107	4.05027963079411	4.19692011122923	4.9987540370107	4.78061930723216	4.71042297072273	4.56673373488288	4.48468311078789	0.182334152158966	0.634009653015573	0.982417279970648
Merged-chr9-108564271-2	chr9	108564171	108564371	+	969.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_011830, intron 9 of 13)	intron (NM_011830, intron 9 of 13)	3071.0	NM_023247	66706.0	Mm.29471	NM_023247	ENSMUSG00000070283	Ndufaf3	4733401H18Rik	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-85288008-3	chr13	85287921	85288121	+	915.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145452, intron 1 of 24)	intron (NM_145452, intron 1 of 24)	1465.0	NM_145452	218397.0	Mm.259653	NM_145452	ENSMUSG00000021549	Rasa1	Gap|RasGAP|Rasa	RAS p21 protein activator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-41464645-2	chr4	41464545	41464745	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025539)	promoter-TSS (NM_025539)	203.0	NM_024241	109242.0	Mm.370288	NM_024241	ENSMUSG00000028438	Kif24	4933425J19Rik|9430029L23Rik	kinesin family member 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30842270-4	chr7	30842178	30842378	+	832.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13900.0	NM_001033316	233080.0	Mm.291167	NM_001033316	ENSMUSG00000019429	Ffar3	Gm478|Gpr41	free fatty acid receptor 3	protein-coding	2.10540103914143	2.97139213441735	2.06943927435947	2.32891697268945	2.21834457717903	1.14583271898877	1.11446824599981	1.08645779591135	-2.30743946770586	0.0393698203783455	0.282061567416037
Merged-chr3-137968999-2	chr3	137968846	137969046	+	603.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011932, intron 1 of 8)	intron (NM_011932, intron 1 of 8)	12603.0	NM_001310753	26377.0	Mm.254835	NM_011932	ENSMUSG00000028159	Dapp1	Bam32	dual adaptor for phosphotyrosine and 3-phosphoinositides 1	protein-coding	1.64128659738971	1.49753430478856	0.898116861530842	1.63974210056196	1.65647421178227	0.91785733801237	0.901708983533438	1.92780462404823	-0.0323346268273245	0.981042525271763	0.998431161219273
Merged-chr19-29939960-2	chr19	29939860	29940060	+	612.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360725, intron 2 of 8)	intron (NM_001360725, intron 2 of 8)	-5830.0	NM_001164724	77125.0	Mm.182359	NM_133775	ENSMUSG00000024810	Il33	9230117N10Rik|Il-33|Il1f11|NF-HEV	interleukin 33	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-48411614-2	chr5	48411514	48411714	+	677.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199244, intron 3 of 7)	B4A|SINE|B4	16041.0	NR_045500	70592.0	Mm.437183	NR_045500	ENSMUSG00000029089	5730480H06Rik	-	RIKEN cDNA 5730480H06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81575846-2	chr10	81575746	81575946	+	748.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001252401, exon 2 of 20)	exon (NM_001252401, exon 2 of 20)	559.0	NM_001252401	21886.0	Mm.38608	NM_019725	ENSMUSG00000034771	Tle2	Grg2|mKIAA4188	transducin-like enhancer of split 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-78370653-2	chr17	78370553	78370753	+	724.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001285949, exon 8 of 8)	3' UTR (NM_001285949, exon 8 of 8)	47499.0	NM_001285949	225020.0	Mm.236835	NM_199448	ENSMUSG00000056121	Fez2	9030616F16|D17Ertd315e	fasciculation and elongation protein zeta 2 (zygin II)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-32134818-2	chr18	32134718	32134918	+	631.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001313938, intron 3 of 8)	intron (NM_001313938, intron 3 of 8)	3387.0	NM_008934	19123.0	Mm.2786	NM_008934	ENSMUSG00000024386	Proc	PC	protein C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-118511967-2	chr2	118511798	118511998	+	796.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32202.0	NM_009273	20813.0	Mm.363404	NM_009273	ENSMUSG00000009549	Srp14	14kDa|AW536328	signal recognition particle 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-17748880-3	chr18	17748822	17749022	+	973.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-167932.0	NR_045374	75162.0	Mm.60874	NR_045374		4930545E07Rik	-	RIKEN cDNA 4930545E07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-85585054-1	chr1	85584954	85585154	+	565.0	f1_balb.idr	intron (NM_030194, intron 7 of 11)	intron (NM_030194, intron 7 of 11)	13756.0	NM_030194	109032.0	Mm.335802	NM_030194	ENSMUSG00000070034	Sp110	5031415C07Rik|52kDa|5830484A20Rik|Ifi75|Ipr1	Sp110 nuclear body protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31401107-4	chr14	31401004	31401204	+	956.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347585, intron 2 of 7)	intron (NM_001347585, intron 2 of 7)	16573.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-68241811-2	chr2	68241711	68241911	+	566.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016866, intron 16 of 17)	intron (NM_016866, intron 16 of 17)	137139.0	NM_020283	26877.0	Mm.226435	NM_020283	ENSMUSG00000034780	B3galt1	beta3Gal-T1	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-94786808-2	chr11	94786708	94786908	+	845.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4105.0	NM_001163172	544806.0	Mm.379774	NM_001034896	ENSMUSG00000075610	Tmem92	AU016430|Tmem92-ps	transmembrane protein 92	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-181234506-4	chr1	181234388	181234588	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22510.0	NM_145514	226757.0	Mm.289082	NM_145514	ENSMUSG00000038733	Wdr26	1600024A01Rik|AA693241|AI447817|AU044014|C77982|Gid7	WD repeat domain 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150606007-4	chr4	150605919	150606119	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 12 of 22)	intron (NM_001085492, intron 12 of 22)	46155.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	3.87027435687864	3.30226071940052	2.66731308812027	3.90938512288593	3.45237923308039	3.92526836815701	3.73317583566366	3.00313708664882	0.0440087247020727	0.938641974514203	0.998431161219273
Merged-chr18-53248834-2	chr18	53248759	53248959	+	623.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029394, intron 1 of 6)	intron (NM_029394, intron 1 of 6)	3197.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-23897418-2	chr16	23897318	23897518	+	810.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6574.0	NM_009215	20604.0	Mm.2453	NM_009215	ENSMUSG00000004366	Sst	SOM|SRIF|SS|Smst	somatostatin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90433992-2	chr2	90433892	90434092	+	748.833374	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008982, exon 24 of 24)	3' UTR (NM_008982, exon 24 of 24)	33352.0	NM_146263	258330.0	Mm.330392	NM_146263	ENSMUSG00000082980	Olfr1274-ps	GA_x5J8B7W2BV0-3116-4045|MOR228-4|MOR228-5|Olfr1274	olfactory receptor 1274, pseudogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-38379021-2	chr18	38378921	38379121	+	624.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39886.0	NM_022996	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71555047-2	chr8	71554983	71555183	+	769.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001100462, exon 4 of 4)	3' UTR (NM_001100462, exon 4 of 4)	3788.0	NM_001100462	434325.0	Mm.33613	NM_001100462	ENSMUSG00000043664	Tmem221	-	transmembrane protein 221	protein-coding	1.32487496216599	2.19530661837656	1.83507157480023	0.836745799275883	1.18973146743643	2.03307086467074	0.856392726916464	0.8394472888278	-0.951345865910849	0.483569536477525	0.931207887927275
Merged-chr16-64907654-4	chr16	64907482	64907682	+	920.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55581.0	NM_178647	106143.0	Mm.10160	NM_178647	ENSMUSG00000054604	Cggbp1	AA960172|AL023996|AW045841	CGG triplet repeat binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-106194319-3	chr14	106194227	106194427	+	895.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	88129.0	NR_073203	212085.0	Mm.78128	NM_198601	ENSMUSG00000022113	Trim52	4921513B05Rik	tripartite motif-containing 52	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-95646231-3	chr1	95646111	95646311	+	962.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159745, intron 3 of 3)	intron (NM_001159745, intron 3 of 3)	21383.0	NM_009183	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-88757291-2	chr4	88757191	88757391	+	848.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001243150)	promoter-TSS (NM_001243150)	-553.0	NM_001243150	100041062.0	Mm.489587	NM_001243150		Gm13286	-	predicted gene 13286	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-82127836-4	chr15	82127743	82127943	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172428)	promoter-TSS (NM_172428)	-79.0	NM_172428	76457.0	Mm.440373	NM_172428	ENSMUSG00000068114	Ccdc134	2310042L06Rik|AW208859	coiled-coil domain containing 134	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120673224-2	chr8	120673124	120673324	+	811.333374	f1_balb.idr|f1_c57bl6.idr	exon (NM_001293559, exon 4 of 5)	exon (NM_001293559, exon 4 of 5)	4904.0	NM_001293559	12857.0	Mm.386758	NM_009941	ENSMUSG00000031818	Cox4i1	AL024441|COX|COX IV-1|COXIV|Cox4|Cox4a|IV-1	cytochrome c oxidase subunit 4I1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-4189843-4	chr12	4189734	4189934	+	970.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159537, intron 3 of 21)	intron (NM_001159537, intron 3 of 21)	44131.0	NM_134046	52504.0	Mm.70546	NM_134046	ENSMUSG00000020652	Cenpo	2810429O05Rik|8430427C03Rik|D12Ertd482e	centromere protein O	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-62935403-2	chr14	62935303	62935503	+	604.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175546, intron 6 of 11)	intron (NM_175546, intron 6 of 11)	49107.0	NM_001037751	432867.0	Mm.99387	NM_001037751	ENSMUSG00000075574	Defb48	Defb42|EG432867	defensin beta 48	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-32312881-4	chr13	32312767	32312967	+	873.74585	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146041, intron 1 of 10)	intron (NM_146041, intron 1 of 10)	25677.0	NM_146041	218138.0	Mm.247143	NM_146041	ENSMUSG00000038372	Gmds	BC031788|C87208	GDP-mannose 4, 6-dehydratase	protein-coding	2.70866554519839	3.53381078328344	3.03283770837829	2.85469189734818	2.12268120565869	3.15932167652322	2.85434874997414	2.52933420658695	-0.64689389140334	0.351461485683213	0.851869250625437
Merged-chr8-115618338-8	chr8	115618230	115618430	+	904.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TTTTG)n|Simple_repeat|Simple_repeat	88564.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99089098-4	chr7	99089007	99089207	+	993.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 4 of 14)	intron (NM_178635, intron 4 of 14)	52037.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	1.71078081856895	1.31450092764116	1.9634733690949	1.90555320748448	1.72509287348172	1.32208154237628	1.06936457179073	1.91580937215786	-0.605309467401496	0.595552542685948	0.971139446851758
Merged-chr17-17842220-1	chr17	17842120	17842320	+	678.0	f1_c57bl6.idr	Intergenic	L1MB8|LINE|L1	11245.0	NM_001162909	75202.0	Mm.227456	NM_029205	ENSMUSG00000080316	Spaca6	4930546H06Rik|9530079D04Rik|B230206P06Rik|Ncrna00085|SPACA6A|let-7e|mir-125a|mir-99b	sperm acrosome associated 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100591100-4	chr7	100590995	100591195	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_003559, intron 1 of 7)	intron (NR_003559, intron 1 of 7)	319.0	NR_153425	52443.0	Mm.473730	NM_198831	ENSMUSG00000030706	Mrpl48	1810030E20Rik|2610028L11Rik|CGI-118|D4Ertd786e|L48mt|MRP-L48	mitochondrial ribosomal protein L48	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-94689375-2	chr9	94689275	94689475	+	609.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_177909, intron 2 of 15)	Lx2|LINE|L1	19483.0	NM_177909	331004.0	Mm.326125	NM_177909	ENSMUSG00000031129	Slc9a9	5730527A11Rik|9930105B05|AI854429|Nhe9	solute carrier family 9 (sodium/hydrogen exchanger), member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100499408-2	chr7	100499308	100499508	+	661.166687	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011671, exon 8 of 8)	3' UTR (NM_011671, exon 8 of 8)	6050.0	NM_011671	22228.0	Mm.171378	NM_011671	ENSMUSG00000033685	Ucp2	Slc25a8|UCP 2|UCPH	uncoupling protein 2 (mitochondrial, proton carrier)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-49905497-7	chr16	49905411	49905611	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010581, intron 8 of 9)	intron (NM_010581, intron 8 of 9)	49857.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-82257080-3	chr12	82256954	82257154	+	930.7000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167983, intron 2 of 23)	intron (NM_001167983, intron 2 of 23)	-54295.0	NM_172579	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-122901859-3	chr9	122901760	122901960	+	998.944458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-1386.0	NM_001353989	666257.0	Mm.390242	NM_001353989		Gm8008	EG666257|Znf660	predicted gene 8008	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99703488-2	chr15	99703388	99703588	+	744.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_031842, intron 2 of 12)	intron (NM_031842, intron 2 of 12)	1201.0	NM_031842	83797.0	Mm.273756	NM_031842	ENSMUSG00000023018	Smarcd1	AA407987|Baf60a|D15Kz1	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-139130345-4	chr4	139130256	139130456	+	927.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163006, intron 1 of 3)	CpG	681.0	NR_033745	433771.0	Mm.305990	NM_001163006	ENSMUSG00000050608	Minos1	2310028O11Rik	mitochondrial inner membrane organizing system 1	protein-coding	0.940767710665767	0.573601862183786	1.35502309662579	0.730346230150709	1.05289501140211	0.780555164785134	1.04882835089052	0.558863532669889	-0.313196446041503	0.838749485849359	1
Merged-chr8-39642758-4	chr8	39642665	39642865	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031195)	promoter-TSS (NM_031195)	-87.0	NM_001113326	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-85557727-4	chr8	85557624	85557824	+	934.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2453.0	NM_019794	56445.0	Mm.475573	NM_019794	ENSMUSG00000031701	Dnaja2	1500017M13Rik|2010206B19Rik|DNAJ|DNJ3|Dnaj3|HIRIP4|PRO3015|mDj3	DnaJ heat shock protein family (Hsp40) member A2	protein-coding	2.06179572094911	1.90605363084046	1.19179620963645	2.94274864472815	1.84587552732856	2.22386323401139	1.19880489105896	2.48290025735862	-0.387758804747191	0.717165464820574	0.998431161219273
Merged-chr4-123664739-4	chr4	123664618	123664818	+	912.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199137, intron 1 of 92)	CpG	-1163.0	NR_136925	102633214.0	Mm.399387	NR_136925		Gm12925	-	predicted gene 12925	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-84743526-2	chr12	84743426	84743626	+	634.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29586.0	NM_023409	67963.0	Mm.282556	NM_023409	ENSMUSG00000021242	Npc2	2700012J19Rik|AA408070|AU045843|HE1	NPC intracellular cholesterol transporter 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59866896-4	chr15	59866787	59866987	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-71928.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	-1.50595015592756	-1.47350828872742	-1.32895206006278	-1.49137776871011	-1.50367279683513	-1.47138227162179	-1.17236421817108	-1.48993524887237	0.87905007711136	0.800098370502509	1
Merged-chr16-93881892-2	chr16	93881792	93881992	+	747.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-2009.0	NM_028083	110749.0	Mm.274222	NM_028083	ENSMUSG00000022945	Chaf1b	2600017H24Rik|C76145|CAF-I p60|CAF-Ip60|CAF1|CAF1A|CAF1P60|MPHOSPH7	chromatin assembly factor 1, subunit B (p60)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-89290823-1	chr6	89290723	89290923	+	546.0	f1_c57bl6.idr	Intergenic	L1MB3|LINE|L1	-5098.0	NR_131021	75131.0	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	Gm44205	RIKEN cDNA 4930512J16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-54960102-4	chr6	54959936	54960136	+	799.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172729, intron 1 of 11)	intron (NM_172729, intron 1 of 11)	11625.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-57383742-4	chr16	57383608	57383808	+	779.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	30431.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-106681128-4	chr5	106681027	106681227	+	971.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026856, intron 1 of 6)	intron (NM_026856, intron 1 of 6)	15703.0	NM_026856	52397.0	Mm.249474	NM_026856	ENSMUSG00000049606	Zfp644	1110068L01Rik|AA408882|BM-005|D5Ertd689e|Zep-2	zinc finger protein 644	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25690488-1	chr7	25690388	25690588	+	541.0	f1_c57bl6.idr	intron (NM_011577, intron 1 of 6)	(TGAA)n|Simple_repeat|Simple_repeat	3486.0	NM_011577	21803.0	Mm.248380	NM_011577	ENSMUSG00000002603	Tgfb1	TGF-beta1|TGFbeta1|Tgfb|Tgfb-1	transforming growth factor, beta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-83448008-3	chr9	83447895	83448095	+	938.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_102437, intron 2 of 2)	intron (NR_102437, intron 2 of 2)	-6868.0	NM_029434	75782.0	Mm.199698	NM_027448	ENSMUSG00000032258	Lca5	4930431B11Rik|5730406O13Rik|AV274874|ORF64	Leber congenital amaurosis 5 (human)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-66344819-3	chr9	66344720	66344920	+	884.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-5630.0	NM_145617	235439.0	Mm.244179	NM_145617	ENSMUSG00000038664	Herc1	2810449H11Rik|B230218H07|D130015N03Rik|tbl	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-67032339-2	chr15	67032239	67032439	+	565.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62698.0	NM_008681	17988.0	Mm.30837	NM_008681	ENSMUSG00000005125	Ndrg1	CAP43|CMT4D|DRG1|HMSNL|NMSL|Ndr1|Ndrl|PROXY1|RTP|TDD5	N-myc downstream regulated gene 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-85189393-4	chr13	85189282	85189482	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347588)	promoter-TSS (NM_001347588)	-3.0	NM_001347587	66671.0	Mm.18474	NM_023243	ENSMUSG00000021548	Ccnh	6330408H09Rik|AI661354|AV102684|AW538719	cyclin H	protein-coding	-1.05877568042897	-1.03501312238488	-1.04817210678232	-1.05426068996071	-1.05810152525527	-1.03216151557194	-0.188696606725984	-1.05378786495764	3.16074139804981	0.330468818528456	1
Merged-chr13-94381619-4	chr13	94381517	94381717	+	979.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009680, intron 1 of 26)	intron (NM_009680, intron 1 of 26)	22657.0	NM_009680	11774.0	Mm.21185	NM_009680	ENSMUSG00000021686	Ap3b1	AP-3|AU015684|C78395|Hps2|beta3A|pe|pearl|rim2	adaptor-related protein complex 3, beta 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-47329311-2	chr19	47329211	47329411	+	850.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_008018, intron 6 of 14)	RMER1C|Other|Other	-55722.0	NR_105961	102466782.0		NR_105961	ENSMUSG00000098786	Mir6995	Gm27576|mmu-mir-6995	microRNA 6995	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125756436-2	chr6	125756336	125756536	+	669.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153589, intron 3 of 25)	RLTR31D_MM|LTR|ERVK	66017.0	NM_153589	243634.0	Mm.333398	NM_153589	ENSMUSG00000038115	Ano2	BC033409|Tmem16b	anoctamin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-77910876-2	chr10	77910776	77910976	+	902.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_138301, intron 33 of 33)	MTE2b|LTR|ERVL-MaLR	-8340.0	NM_145152	237387.0	Mm.133301	NM_145152	ENSMUSG00000051652	Lrrc3	1300011L04Rik|C21orf102	leucine rich repeat containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-126468711-4	chr4	126468596	126468796	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001317173)	promoter-TSS (NM_001317173)	-113.0	NM_153403	236511.0	Mm.30800	NM_153403	ENSMUSG00000041530	Ago1	Eif2c1	argonaute RISC catalytic subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129514491-4	chr2	129514362	129514562	+	984.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177653, intron 1 of 6)	intron (NM_177653, intron 1 of 6)	22140.0	NM_177653	228592.0	Mm.452175	NM_177653	ENSMUSG00000043727	F830045P16Rik	Sirpb3	RIKEN cDNA F830045P16 gene	protein-coding	1.37994527744282	1.33299069517889	1.28506871070686	0.79122408134583	1.29777482604027	1.34364616926686	0.802453445340663	1.25393332180698	-0.114847753946373	0.933116454282774	0.998431161219273
Merged-chr8-86746145-4	chr8	86746053	86746253	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009172)	promoter-TSS (NM_009172)	-147.0	NM_009172	20437.0	Mm.324553	NM_009172	ENSMUSG00000036840	Siah1a	AA982064|AI853500|Sinh1a	siah E3 ubiquitin protein ligase 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-61946055-4	chr9	61945966	61946166	+	931.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024245, intron 1 of 22)	intron (NM_024245, intron 1 of 22)	733.0	NM_024245	71819.0	Mm.259374	NM_024245	ENSMUSG00000032254	Kif23	3110001D19Rik|C87313|CHO1|Knsl5|MKLP-1|MKLP1	kinesin family member 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-11347997-3	chr8	11347937	11348137	+	807.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009932, intron 3 of 47)	intron (NM_009932, intron 3 of 47)	-35211.0	NM_009931	12826.0	Mm.738	NM_009931	ENSMUSG00000031502	Col4a1	Bru|Col4a-1|Raw|Svc	collagen, type IV, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-59208931-5	chr3	59208835	59209035	+	922.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028808, exon 2 of 2)	3' UTR (NM_028808, exon 2 of 2)	1947.0	NM_028808	74191.0	Mm.90067	NM_028808	ENSMUSG00000036362	P2ry13	2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174	purinergic receptor P2Y, G-protein coupled 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-92653517-4	chr7	92653415	92653615	+	961.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029078, intron 8 of 15)	B1_Mus1|SINE|Alu	-16373.0	NM_028665	73845.0	Mm.73248	NM_028665	ENSMUSG00000041343	Ankrd42	4931426M20|4933417L02Rik|Ikbn	ankyrin repeat domain 42	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-14186798-4	chr10	14186715	14186915	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	220436.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-8811059-2	chr16	8810959	8811159	+	771.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19041.0	NM_001081400	69053.0	Mm.390868	NM_001081400	ENSMUSG00000022507	1810013L24Rik	1110017P05Rik|3010002C02Rik|AA792997|AW124177|Gm19906|R74903	RIKEN cDNA 1810013L24 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-5878330-4	chr11	5878229	5878429	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361942)	promoter-TSS (NM_001361942)	-73.0	NM_008894	18972.0	Mm.35788	NM_008894	ENSMUSG00000020471	Pold2	50kDa|p50|po1D2	polymerase (DNA directed), delta 2, regulatory subunit	protein-coding	4.78060255431542	4.59001895672369	5.09878061699981	5.33135259806645	4.8159484756178	4.78272434034767	4.86567763755601	4.92509717041762	-0.161870175732881	0.624977303511368	0.980912176761026
Merged-chr7-44534427-2	chr7	44534327	44534527	+	587.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_011131, exon 22 of 27)	exon (NM_011131, exon 22 of 27)	-2356.0	NM_019866	272382.0	Mm.8012	NM_019866	ENSMUSG00000008193	Spib	Spi-B	Spi-B transcription factor (Spi-1/PU.1 related)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-102978841-5	chr14	102978770	102978970	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177715, exon 1 of 1)	3' UTR (NM_177715, exon 1 of 1)	3762.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-90697141-2	chr5	90697041	90697241	+	848.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	-56614.0	NM_001310656	73246.0	Mm.30172	NM_028478	ENSMUSG00000029370	Rassf6	1600016B17Rik	Ras association (RalGDS/AF-6) domain family member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-103588928-4	chr8	103588821	103589021	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14878.0	NR_045730	71058.0	Mm.67707	NR_045730	ENSMUSG00000110336	4933400L20Rik	-	RIKEN cDNA 4933400L20 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-51238715-2	chr3	51238615	51238815	+	655.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009834, intron 1 of 2)	ORR1D1|LTR|ERVL-MaLR	14268.0	NM_009834	12457.0	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-112928945-4	chr10	112928836	112929036	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033474)	promoter-TSS (NM_001033474)	90.0	NM_001033474	382423.0	Mm.431239	NM_001033474	ENSMUSG00000074748	Atxn7l3b	4921506J03Rik|6230409E21Rik|AI315132	ataxin 7-like 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-64011297-2	chr7	64011197	64011397	+	689.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-72382.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-84555628-3	chr2	84555532	84555732	+	919.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	-48759.0	NR_046046	672763.0	Mm.491046	NR_046046	ENSMUSG00000087362	Gm13710	-	predicted gene 13710	ncRNA	0.332943950001275	1.38257793947097	0.35364395965599	1.16528179035406	0.783028282390172	0.365709875606332	0.566705129580466	0.34729037778725	-1.93047820659636	0.288627741671076	1
Merged-chr9-107747097-2	chr9	107746997	107747197	+	732.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153190, intron 16 of 23)	B1_Mur2|SINE|Alu	23905.0	NM_148930	83486.0	Mm.259197	NM_148930	ENSMUSG00000032580	Rbm5	D030069N10Rik	RNA binding motif protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-70964916-2	chr12	70964816	70965016	+	660.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_019785)	TTS (NM_019785)	-9707.0	NM_001310595	19167.0	Mm.296338	NM_011184	ENSMUSG00000060073	Psma3	Lmpc8	proteasome (prosome, macropain) subunit, alpha type 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-93418575-4	chr2	93418440	93418640	+	740.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001136055)	TTS (NM_001136055)	3467.0	NR_105967	102465605.0		NR_105967	ENSMUSG00000099238	Mir7001	Gm27886|mmu-mir-7001	microRNA 7001	ncRNA	0.762467281799646	0.861394232262445	0.604646698578633	1.57085202499234	0.768918262241566	1.06825970675009	1.89771581462773	0.595358071497565	0.687547932987729	0.64207197522208	0.982599433509505
Merged-chr2-59245317-3	chr2	59245349	59245549	+	912.214294	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 2 of 20)	RSINE1|SINE|B4	84599.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-102429305-6	chr11	102429220	102429420	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1|SINE|Alu	-1002.0	NM_008175	14824.0	Mm.1568	NM_008175	ENSMUSG00000034708	Grn	Pgrn|epithelin	granulin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-84253631-2	chr15	84253531	84253731	+	792.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133167, intron 1 of 12)	intron (NM_133167, intron 1 of 12)	21588.0	NM_133167	170736.0	Mm.323892	NM_133167	ENSMUSG00000022438	Parvb	AI595373|AW742462|D15Gsk1|affixin	parvin, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-5615068-4	chr13	5614974	5615174	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	243018.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-67869362-4	chr14	67869273	67869473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177780, intron 2 of 51)	intron (NM_177780, intron 2 of 51)	-9628.0	NR_105857	102465310.0		NR_105857	ENSMUSG00000098866	Mir6539	Gm27464|mir-6539|mmu-mir-6539	microRNA 6539	ncRNA	3.72239001698895	4.0240951032156	3.65068098738171	4.10169135281554	4.53654335242581	3.89456013554337	4.06064118644152	4.70024325459134	0.624311801638554	0.1562386379459	0.612065034199469
Merged-chr17-51288942-4	chr17	51288908	51289108	+	737.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_037268, intron 3 of 4)	RLTR53_Mm|LTR|ERVK	11020.0	NR_037253	100526485.0		NR_037253	ENSMUSG00000105330	Mir669a-6	mmu-mir-669a-6	microRNA 669a-6	ncRNA	2.82563614413271	1.79368889925332	2.73149627486232	2.56108944562532	2.70693429561407	2.02363197449028	2.42536370231574	2.6698229784576	-0.117122884851719	0.884071187197042	0.998431161219273
Merged-chr13-51842189-2	chr13	51842089	51842289	+	938.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4486.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-63422383-2	chr10	63422283	63422483	+	680.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-7715.0	NM_177612	216033.0	Mm.444692	NM_177612	ENSMUSG00000060843	Ctnna3	4930429L08Rik|4933408A16|Catna3|Vr22	catenin (cadherin associated protein), alpha 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-13426456-4	chr1	13426413	13426613	+	997.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52430.0	NM_008678	17978.0	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-74811002-4	chr17	74810819	74811019	+	875.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152817, intron 13 of 19)	intron (NM_152817, intron 13 of 19)	93169.0	NM_152817	74196.0	Mm.209503	NM_152817	ENSMUSG00000024078	Ttc27	2610511O17Rik	tetratricopeptide repeat domain 27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-86751203-2	chr11	86751103	86751303	+	838.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001003908, intron 1 of 31)	B3|SINE|B2	6364.0	NM_001003908	67300.0	Mm.254588	NM_001003908	ENSMUSG00000047126	Cltc	3110065L21Rik|CHC|R74732	clathrin, heavy polypeptide (Hc)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-59556326-4	chr14	59556233	59556433	+	993.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41626.0	NM_001168537	71891.0	Mm.439850	NM_027986	ENSMUSG00000021982	Cdadc1	2310010M10Rik|AI449174|AI463398|BB130816|NYD-SP15	cytidine and dCMP deaminase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-99251009-4	chr5	99250899	99251099	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181318, intron 1 of 13)	intron (NM_181318, intron 1 of 13)	1928.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124052302-4	chr5	124052195	124052395	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20035.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	3.13489407549229	2.93757819878488	4.05643155908589	3.00070774026654	4.4101538075962	2.80014024386812	4.19352780031595	4.02223247111837	0.900040109446625	0.120303956353704	0.544544844692557
Merged-chr7-89383142-2	chr7	89383042	89383242	+	579.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360746, intron 1 of 14)	intron (NM_001360746, intron 1 of 14)	21080.0	NM_001360746	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-9311055-2	chr9	9310955	9311155	+	641.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MMERVK9E_I-int|LTR|ERVK	-72042.0	NM_027823	71544.0	Mm.334955	NM_027823	ENSMUSG00000050730	Arhgap42	9030420J04Rik|BE136619	Rho GTPase activating protein 42	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-31565471-3	chr17	31565373	31565573	+	940.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016670, intron 1 of 10)	CpG	700.0	NM_016670	18771.0	Mm.259295	NM_016670	ENSMUSG00000006705	Pknox1	D17Wsu76e|PREP1	Pbx/knotted 1 homeobox	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-103362948-14	chr11	103362839	103363039	+	936.4285890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205236, intron 1 of 17)	intron (NM_001205236, intron 1 of 17)	753.0	NM_183288	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-142795344-2	chr5	142795244	142795444	+	637.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178242, intron 2 of 15)	ZP3AR|Satellite|Satellite	22043.0	NM_178242	231861.0	Mm.354649	NM_178242	ENSMUSG00000039477	Tnrc18	BC025631|EG381742|Zfp469	trinucleotide repeat containing 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84276956-3	chr8	84276886	84277086	+	811.4317629999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17A2|LTR|ERVK	-6584.0	NM_026350	67736.0	Mm.30095	NM_026350	ENSMUSG00000004994	Ccdc130	4930527D15Rik|C77430	coiled-coil domain containing 130	protein-coding	-0.314689697730229	-0.55384899836632	-0.557048883653525	-0.559505741032878	-0.308649554824444	-0.553125298296825	-0.556344623739275	-0.0515483912832493	1.60665056417396	0.549904192954923	1
Merged-chr15-77842289-4	chr15	77842189	77842389	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022410)	promoter-TSS (NM_022410)	-114.0	NM_022410	17886.0	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-38480252-4	chr5	38480130	38480330	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001102414)	promoter-TSS (NM_001102414)	76.0	NM_001102414	117591.0	Mm.260137	NM_145559	ENSMUSG00000005107	Slc2a9	Glut9|SLC2A9B|SLC2a9A	solute carrier family 2 (facilitated glucose transporter), member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-78880724-1	chr17	78880624	78880824	+	650.0	f1_balb.idr	intron (NM_011163, intron 1 of 15)	B3A|SINE|B2	1848.0	NM_011163	19106.0	Mm.378990	NM_011163	ENSMUSG00000024079	Eif2ak2	2310047A08Rik|4732414G15Rik|AI467567|AI747578|Pkr|Prkr|Tik	eukaryotic translation initiation factor 2-alpha kinase 2	protein-coding	0.611846045711652	1.24110119284589	0.322794910102043	0.315593550881766	0.305292222784847	1.14946419708772	0.324840707433239	0.66895957546314	-0.12056581579599	0.947614047218201	1
Merged-chr15-100463916-4	chr15	100463812	100464012	+	872.18335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-5099.0	NM_001357983	68614.0	Mm.275272	NM_134093	ENSMUSG00000037353	Letmd1	1110019O13Rik|AI593524|BB130465|BB235638|HCCR-2|HCCR1|MCC-32|Mccr	LETM1 domain containing 1	protein-coding	3.23935011193704	3.46961723528649	3.19661102672464	3.02078112496373	2.18239759161383	3.02667800069609	3.22099866658911	2.72280374402831	-0.706805747375274	0.273061945116418	0.776472717058016
Merged-chr17-35828639-2	chr17	35828539	35828739	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008027, intron 8 of 12)	B1_Mus1|SINE|Alu	5282.0	NM_008027	14251.0	Mm.2931	NM_008027	ENSMUSG00000059714	Flot1	reggie-2	flotillin 1	protein-coding	-0.0750517851446003	0.128979368482002	-0.194179038745603	-0.197022743472847	0.141344582579683	-0.18962739886735	0.105350077149843	-0.0480961141006618	0.864024597789802	0.688281124062211	1
Merged-chr11-95259810-2	chr11	95259710	95259910	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1719.0	NM_053093	93670.0	Mm.40085	NM_053093	ENSMUSG00000020872	Tac4	AW489379|PPT-C	tachykinin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-37696671-4	chr19	37696551	37696751	+	658.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1157.0	NM_007811	13082.0	Mm.42230	NM_007811	ENSMUSG00000024987	Cyp26a1	Cyp26|P450RA|P450RAI|RAH	cytochrome P450, family 26, subfamily a, polypeptide 1	protein-coding	1.61849759760587	1.19931357195177	1.88206012880277	2.23327683043104	1.63075424329454	1.81605651013254	1.89662129050634	2.24509328142244	0.34407465131592	0.741129067092418	0.998431161219273
Merged-chr5-35592394-2	chr5	35592294	35592494	+	574.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030721, intron 7 of 18)	intron (NM_030721, intron 7 of 18)	-3631.0	NR_045807	74364.0	Mm.473123	NM_175208	ENSMUSG00000055061	4931431C16Rik	-	RIKEN cDNA 4931431C16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-142707996-2	chr6	142707896	142708096	+	600.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5722.0	NM_001310143	20928.0	Mm.35670	NM_011511	ENSMUSG00000030249	Abcc9	AI414027|AI449286|SUR2A|SUR2B|Sur2	ATP-binding cassette, sub-family C (CFTR/MRP), member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33380817-4	chr16	33380764	33380964	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011749)	promoter-TSS (NM_011749)	89.0	NM_011749	22661.0	Mm.392667	NM_011749	ENSMUSG00000022811	Zfp148	2210405J08Rik|AI480666|AW045217|BERF-1|BFCOL1|ZBP-89|Znf148	zinc finger protein 148	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-81044077-4	chr5	81043983	81044183	+	999.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198702, intron 1 of 27)	L1MA5|LINE|L1	22490.0	NM_198702	319387.0	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	1.38678667617529	0.934351168649196	0.913552749853175	0.897026525454588	2.07625430235139	1.40973664335987	2.01682797782246	2.19621344829757	3.38159801515598	0.0120144595961911	0.124266798478535
Merged-chr10-67302539-4	chr10	67302431	67302631	+	923.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17250.0	NM_001036293	641340.0	Mm.136223	NM_001036293	ENSMUSG00000075000	Nrbf2	NRBF-2	nuclear receptor binding factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118585761-2	chr9	118585661	118585861	+	819.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20948.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-85272955-1	chr1	85272855	85273055	+	684.0	f1_balb.idr	Intergenic	Intergenic	-2389.0	NM_001037909	620078.0	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik	RIKEN cDNA C130026I21 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-66070067-4	chr5	66069983	66070183	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139065, intron 2 of 6)	intron (NM_139065, intron 2 of 6)	28096.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	1.939693500808	2.18611566259249	1.38128469645929	2.23347116473199	1.85503097451265	1.17741642176706	1.39001352671261	2.24549912598225	-0.638659946895049	0.554288812445934	0.959914380895535
Merged-chr17-27125340-3	chr17	27125252	27125452	+	712.027771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026063, intron 2 of 3)	intron (NM_026063, intron 2 of 3)	8539.0	NM_026063	67267.0	Mm.272389	NM_026063	ENSMUSG00000024208	Uqcc2	2900010M23Rik|Cbp6|M19|Mnf1	ubiquinol-cytochrome c reductase complex assembly factor 2	protein-coding	0.324294940298829	1.31692454723078	0.347385392411345	1.36751370557331	0.326478758122939	0.360749201614274	0.349812794644203	0.988907105082063	-1.9049034765024	0.317415978756818	0.820861935376414
Merged-chr16-35918801-4	chr16	35918662	35918862	+	930.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19708.0	NM_030253	80285.0	Mm.49074	NM_030253	ENSMUSG00000022906	Parp9	ARTD9|AW214463|BC003281|Bagl|Bal|PARP-9	poly (ADP-ribose) polymerase family, member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-3872371-4	chr16	3872267	3872467	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033159)	promoter-TSS (NM_001033159)	7.0	NM_001033159	71063.0	Mm.379190	NM_001033159	ENSMUSG00000039789	Zfp597	4933407K12Rik|AI462383|AI666357	zinc finger protein 597	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-24868683-2	chr10	24868583	24868783	+	590.099976	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID2|SINE|ID	-1303.0	NM_001166416	70208.0	Mm.28020	NM_027347	ENSMUSG00000019984	Med23	130kDa|3000002A17Rik|Crsp3|ESTM7|Sur2|X83317|mKIAA1216	mediator complex subunit 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-75700147-2	chr2	75700047	75700247	+	847.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_132727, intron 1 of 1)	intron (NR_132727, intron 1 of 1)	4516.0	NR_132727	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	-0.444625619854891	-0.692463809513052	-0.14289512517372	-0.697972119679026	-0.560176605561735	-0.691760258584148	-0.694891968605246	-0.697554345884745	-2.24069052871221	0.41123471797803	1
Merged-chr10-7846144-3	chr10	7846057	7846257	+	718.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172785, intron 2 of 5)	intron (NM_172785, intron 2 of 5)	9776.0	NR_039563	100628581.0		NR_039563	ENSMUSG00000093060	Mir5104	mir-5104|mmu-mir-5104|mu-mir-5104	microRNA 5104	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-86637103-4	chr10	86637015	86637215	+	997.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48412.0	NR_015572	66263.0	Mm.392261	NR_015572	ENSMUSG00000097412	1810014B01Rik	-	RIKEN cDNA 1810014B01 gene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-27556281-2	chr15	27556181	27556381	+	588.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_020332, intron 3 of 11)	MTD|LTR|ERVL-MaLR	-15213.0	NR_106065	102466808.0		NR_106065	ENSMUSG00000098416	Mir7117	Gm27729|mmu-mir-7117	microRNA 7117	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69406970-2	chr11	69406870	69407070	+	781.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001017426, intron 8 of 22)	intron (NM_001017426, intron 8 of 22)	6705.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-116440184-3	chr6	116440077	116440277	+	952.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009662, intron 3 of 13)	intron (NM_009662, intron 3 of 13)	21001.0	NM_009662	11689.0	Mm.41072	NM_009662	ENSMUSG00000025701	Alox5	5-LO|5-LOX|5LO|5LX|AI850497|F730011J02	arachidonate 5-lipoxygenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-28533308-4	chr2	28533198	28533398	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145835)	promoter-TSS (NM_001145835)	-166.0	NM_001145835	19730.0	Mm.5236	NM_009058	ENSMUSG00000026821	Ralgds	Gnds|Rgds|mKIAA1308	ral guanine nucleotide dissociation stimulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-121713150-2	chr11	121713050	121713250	+	659.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_144797, intron 2 of 3)	intron (NM_144797, intron 2 of 3)	10723.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-45608626-4	chr17	45608529	45608729	+	870.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-6527.0	NM_001177469	653016.0	Mm.45676	NM_001177468	ENSMUSG00000079471	Mymx	EG653016|Esgp|Gm7325|minion|myomerger	myomixer, myoblast fusion factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43466625-4	chr4	43466524	43466724	+	973.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11998.0	NM_007654	12517.0	Mm.188157	NM_007654	ENSMUSG00000028459	Cd72	CD72c|Ly-19|Ly-32|Ly-m19|Lyb-2	CD72 antigen	protein-coding	2.93686320595784	2.73779329974679	3.26172935892211	3.17303792382174	3.62162437380637	2.43958921212001	2.79493604004857	2.82210015647831	-0.0489373006595607	0.941342273794943	0.998431161219273
Merged-chr18-38381452-3	chr18	38381334	38381534	+	911.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37473.0	NM_022996	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-71162708-4	chr9	71162618	71162818	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271843)	promoter-TSS (NM_001271843)	-85.0	NM_001271843	64008.0	Mm.449427	NM_022026	ENSMUSG00000032204	Aqp9	1700020I22Rik|AI266899|AQP-9	aquaporin 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-116370542-3	chr7	116370442	116370642	+	835.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011083, intron 13 of 32)	intron (NM_011083, intron 13 of 32)	-36352.0	NM_026533	68052.0	Mm.14798	NM_026533	ENSMUSG00000090862	Rps13	2700063M04Rik	ribosomal protein S13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-110500491-2	chr12	110500391	110500591	+	618.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081457, intron 1 of 12)	intron (NM_001081457, intron 1 of 12)	14752.0	NM_012023	26931.0	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-53781249-2	chr6	53781149	53781349	+	671.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39576.0	NM_025817	66873.0	Mm.422727	NM_025817	ENSMUSG00000043496	Tril	1200009O22Rik|AI316813|mKIAA0644	TLR4 interactor with leucine-rich repeats	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85491941-2	chr12	85491841	85492041	+	714.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18051.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-113501559-2	chr6	113501459	113501659	+	744.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289699, intron 1 of 3)	intron (NM_001289699, intron 1 of 3)	259.0	NM_172487	210673.0	Mm.133060	NM_172487	ENSMUSG00000045009	Prrt3	6330505P20|B230206N24Rik	proline-rich transmembrane protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-18625240-4	chr19	18625121	18625321	+	762.604187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017375, intron 1 of 9)	intron (NM_017375, intron 1 of 9)	6592.0	NM_017375	20409.0	Mm.172222	NM_017375	ENSMUSG00000024725	Ostf1	C78236|SH3P2|Sh3d3	osteoclast stimulating factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-5317724-2	chr10	5317624	5317824	+	642.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347711, intron 43 of 145)	intron (NM_001347711, intron 43 of 145)	-123017.0	NM_001079686	64009.0	Mm.331626	NM_022027	ENSMUSG00000096054	Syne1	8B|A330049M09Rik|BE692247|C130039F11Rik|CPG2|KASH1|Myne1|mKIAA1756|myne-1	spectrin repeat containing, nuclear envelope 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-25130578-4	chr9	25130459	25130659	+	854.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_020586, exon 3 of 8)	exon (NM_020586, exon 3 of 8)	21222.0	NM_020586	80517.0	Mm.142843	NM_020586	ENSMUSG00000008429	Herpud2	5031400M07Rik|AB041580	HERPUD family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-69687592-4	chr1	69687497	69687697	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CCGCG)n|Simple_repeat|Simple_repeat	-1637.0	NM_011770	22779.0	Mm.106343	NM_011770	ENSMUSG00000025997	Ikzf2	A730095J18Rik|Helios|Zfpn1a2|Znfn1a2	IKAROS family zinc finger 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-97749062-4	chr7	97748949	97749149	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	-10802.0	NM_175105	66333.0	Mm.29756	NM_175105	ENSMUSG00000042797	Aqp11	1700015P13Rik|AI648923|sjds	aquaporin 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-87189968-4	chr6	87189862	87190062	+	910.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054041, intron 14 of 17)	intron (NM_054041, intron 14 of 17)	85216.0	NM_001167937	52372.0	Mm.282851	NM_001167937	ENSMUSG00000090891	D6Ertd527e	AU043841	DNA segment, Chr 6, ERATO Doi 527, expressed	protein-coding	3.309786787802	2.70992623290546	2.61904537909316	3.2175884324172	3.44328927157435	2.58199412155081	2.49655877183267	2.89670182107632	-0.147119966023337	0.828843670333253	0.998431161219273
Merged-chr6-29768988-3	chr6	29768925	29769125	+	930.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001171000, intron 1 of 16)	CpG	582.0	NM_001171000	74340.0	Mm.210899	NM_021414	ENSMUSG00000029772	Ahcyl2	4631427C17Rik|AI227036|Adohcyase3|mKIAA0828	S-adenosylhomocysteine hydrolase-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43036330-2	chr4	43036230	43036430	+	792.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001253353, exon 3 of 9)	exon (NM_001253353, exon 3 of 9)	3971.0	NM_001253353	230088.0	Mm.260162	NM_172691	ENSMUSG00000036002	Fam214b	B230312A22Rik	family with sequence similarity 214, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-65696935-4	chr5	65696839	65697039	+	996.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081321, intron 1 of 31)	CpG-11111	917.0	NM_001081321	71521.0	Mm.278974	NM_027818	ENSMUSG00000029202	Pds5a	9030416H16Rik|E230024D05Rik|mKIAA0648	PDS5 cohesin associated factor A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-58470220-4	chr3	58470145	58470345	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55525.0	NM_001347233	72033.0	Mm.218409	NM_001081229	ENSMUSG00000027806	Tsc22d2	1810043J12Rik|5530402M19Rik	TSC22 domain family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-43767107-4	chr11	43767002	43767202	+	990.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-19129.0	NM_133795	66827.0	Mm.271974	NM_133795	ENSMUSG00000041278	Ttc1	4833412C19Rik|C79328|TPR1	tetratricopeptide repeat domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-107057445-1	chr8	107057345	107057545	+	963.5	f1_balb.idr	promoter-TSS (NM_139229)	promoter-TSS (NM_139229)	568.0	NR_028367	66164.0	Mm.334789	NM_025391	ENSMUSG00000031917	Nip7	1110017C15Rik|6330509M23Rik|AA408773|AA410017|PEachy	NIP7, nucleolar pre-rRNA processing protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-41468815-4	chr4	41468709	41468909	+	854.383301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025539, intron 1 of 2)	intron (NM_025539, intron 1 of 2)	3661.0	NM_025539	66401.0	Mm.28574	NM_025539	ENSMUSG00000028443	Nudt2	2310051L06Rik|AA939917|APAH1	nudix (nucleoside diphosphate linked moiety X)-type motif 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-83547207-2	chr9	83547107	83547307	+	890.625	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1131.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91474966-3	chr16	91474785	91474985	+	853.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	9781.0	NR_077219	100503120.0	Mm.387130	NR_077219	ENSMUSG00000084866	A930006K02Rik	-	RIKEN cDNA A930006K02 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-127006819-4	chr2	127006701	127006901	+	883.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1910.0	NM_175550	108011.0	Mm.134045	NM_175550	ENSMUSG00000001998	Ap4e1	2310033A20Rik|9930028M04Rik|AV087807	adaptor-related protein complex AP-4, epsilon 1	protein-coding	-0.317949007698132	0.164540692802634	-0.309960872121517	-0.312971630090372	0.140636547967158	-0.305159619899919	-0.30909846013248	-0.0196410879313501	0.609992638210974	0.807068939994979	1
Merged-chr17-34175081-1	chr17	34174981	34175181	+	591.0	f1_balb.idr	Intergenic	RLTR20C|LTR|ERVK	12249.0	NM_013585	16912.0	Mm.390983	NM_013585	ENSMUSG00000096727	Psmb9	Lmp-2|Lmp2	proteasome (prosome, macropain) subunit, beta type 9 (large multifunctional peptidase 2)	protein-coding	2.19185318938068	2.88050201213845	1.52454307384769	3.21942689992611	2.4692457217747	3.29229478974872	2.91084541677975	3.4284802820493	0.832884916968041	0.28663366109933	0.791309403099347
Merged-chr19-37550898-2	chr19	37550798	37550998	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175353, intron 1 of 21)	CpG	480.0	NM_175353	107371.0	Mm.24865	NM_175353	ENSMUSG00000053799	Exoc6	4833405E05Rik|AW413330|C430002C19|Sec15|Sec15l1|hbd|msec15	exocyst complex component 6	protein-coding	-1.50534433797901	-1.47394179928343	-1.48343818617935	-1.49123880112259	-1.3545218820919	-1.47188389262796	-1.48128841234098	-1.19099945612094	1.93927122156264	0.576980285976584	1
Merged-chr11-79974240-3	chr11	79974130	79974330	+	654.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-11843.0	NM_144826	216987.0	Mm.274961	NM_144826	ENSMUSG00000035575	Utp6	4732497O03Rik|HCA66	UTP6 small subunit processome component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-61518837-4	chr14	61518737	61518937	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Arthur1B|DNA|hAT-Tip100	26149.0	NR_045714	75349.0	Mm.233613	NR_045714	ENSMUSG00000115656	4930556J02Rik	-	RIKEN cDNA 4930556J02 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-84565640-2	chr10	84565540	84565740	+	545.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11307.0	NM_146008	216198.0	Mm.296142	NM_146008	ENSMUSG00000020034	Tcp11l2	E430026E19Rik	t-complex 11 (mouse) like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-69475546-4	chr17	69475433	69475633	+	851.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145192, intron 1 of 1)	intron (NM_001145192, intron 1 of 1)	36207.0	NM_001145192	320722.0	Mm.400254	NM_001145192	ENSMUSG00000091636	Akain1	A330050F15Rik	A kinase (PRKA) anchor inhibitor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-132683224-2	chr7	132683124	132683324	+	979.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029609, intron 6 of 6)	intron (NM_029609, intron 6 of 6)	72581.0	NM_029609	76429.0	Mm.276721	NM_029609	ENSMUSG00000030946	Lhpp	2310007H09Rik	phospholysine phosphohistidine inorganic pyrophosphate phosphatase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-110970492-5	chr5	110970403	110970603	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001267622, intron 2 of 22)	B1F|SINE|Alu	-33641.0	NR_030482	735278.0		NR_030482	ENSMUSG00000076163	Mir701	Mirn701|mir-701|mmu-mir-701	microRNA 701	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126147375-4	chr7	126147273	126147473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028816, intron 8 of 23)	PB1D10|SINE|Alu	53128.0	NM_001311143	74204.0	Mm.235663	NM_028816	ENSMUSG00000000131	Xpo6	2610005L19Rik|AL022631|C230091E20Rik|R75304|Ranbp20|exp6|mKIAA0370	exportin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-92928373-4	chr12	92928270	92928470	+	979.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	516453.0	NR_126436	75295.0	Mm.243878	NR_126436	ENSMUSG00000113164	4930559C10Rik	-	RIKEN cDNA 4930559C10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-137395241-4	chr6	137395152	137395352	+	929.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011216, intron 10 of 26)	intron (NM_011216, intron 10 of 26)	-15469.0	NM_001164402	19277.0	Mm.186361	NM_011216	ENSMUSG00000030223	Ptpro	D28|GLEPP1|PTPBK|PTPROt|PTPU2|PTPoc|PTPphi|Ptpn15|R-PTP-O	protein tyrosine phosphatase, receptor type, O	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-30547018-2	chr13	30546918	30547118	+	598.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1702.0	NM_025710	66694.0	Mm.181933	NM_025710	ENSMUSG00000038462	Uqcrfs1	4430402G14Rik|AI875505	ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27055787-2	chr17	27055687	27055887	+	611.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	-1517.0	NM_080553	16440.0	Mm.458106	NM_080553	ENSMUSG00000042644	Itpr3	IP3R 3|Ip3r3|Itpr-3|tf	inositol 1,4,5-triphosphate receptor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-63738913-3	chr9	63738820	63739020	+	724.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016769, intron 1 of 8)	intron (NM_016769, intron 1 of 8)	19074.0	NM_016769	17127.0	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56077596-3	chr17	56077453	56077653	+	769.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024432, intron 1 of 11)	intron (NM_024432, intron 1 of 11)	1780.0	NM_024432	66530.0	Mm.28000	NM_024432	ENSMUSG00000019578	Ubxn6	1200008L11Rik|2210415J11Rik|AU040909|Ubxd1|Ubxdc2	UBX domain protein 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-101826691-4	chr5	101826597	101826797	+	987.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	61567.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120738271-2	chr8	120738171	120738371	+	656.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001301811)	promoter-TSS (NM_001301811)	-368.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81298873-4	chr10	81298791	81298991	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293647, intron 1 of 17)	L1MB7|LINE|L1	5928.0	NM_001146687	18717.0	Mm.24222	NM_008844	ENSMUSG00000034902	Pip5k1c	AI115456|AI835305|Pip5kIgamma	phosphatidylinositol-4-phosphate 5-kinase, type 1 gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81132829-4	chr15	81132724	81132924	+	793.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001082536, intron 1 of 13)	intron (NM_001082536, intron 1 of 13)	-27777.0	NM_153049	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101317200-2	chr15	101317100	101317300	+	627.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	23988.0	NR_033803	77717.0	Mm.391998	NR_033803	ENSMUSG00000075408	6030408B16Rik	AI225877	RIKEN cDNA 6030408B16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-65659321-2	chr17	65659221	65659421	+	791.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133685, intron 6 of 6)	intron (NM_133685, intron 6 of 6)	-17117.0	NM_001146002	213272.0	Mm.255732	NM_153519	ENSMUSG00000050612	Txndc2	AU021712|Sptrx-1|Sptrx1|Trx4	thioredoxin domain containing 2 (spermatozoa)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-128062654-4	chr7	128062554	128062754	+	946.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001082960)	promoter-TSS (NM_001082960)	14.0	NM_008401	16409.0	Mm.262106	NM_008401	ENSMUSG00000030786	Itgam	CD11b/CD18|CR3|CR3A|Cd11b|F730045J24Rik|Ly-40|MAC1|Mac-1|Mac-1a	integrin alpha M	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-57522435-3	chr11	57522359	57522559	+	842.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145426, intron 1 of 2)	intron (NM_145426, intron 1 of 2)	3794.0	NM_145426	216760.0	Mm.30501	NM_145426	ENSMUSG00000020522	Mfap3	2610509F16Rik|2700079M14Rik|AW536327	microfibrillar-associated protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-29000882-2	chr7	29000782	29000982	+	671.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355054, intron 27 of 31)	intron (NM_001355054, intron 27 of 31)	18028.0	NM_008279	26411.0	Mm.148278	NM_008279	ENSMUSG00000037337	Map4k1	Hpk1|mHPK1	mitogen-activated protein kinase kinase kinase kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-70656229-4	chr9	70656129	70656329	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172772, intron 1 of 8)	intron (NM_172772, intron 1 of 8)	945.0	NM_172772	235461.0	Mm.170855	NM_172772	ENSMUSG00000042444	Mindy2	AI465301|B230380D07Rik|Fam63b|mKIAA1164	MINDY lysine 48 deubiquitinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89299559-3	chr3	89299465	89299665	+	777.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MEc|LINE|L1	-18614.0	NM_001162425	13636.0	Mm.15675	NM_010107	ENSMUSG00000027954	Efna1	AI325262|B61|Efl1|Epl1|Eplg1|Lerk1	ephrin A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-47432605-4	chr19	47432504	47432704	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008018, intron 1 of 14)	intron (NM_008018, intron 1 of 14)	31807.0	NM_001164717	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-100681835-4	chr13	100681737	100681937	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_183115, exon 4 of 12)	exon (NM_183115, exon 4 of 12)	12356.0	NM_001168386	76041.0	Mm.23977	NM_183115	ENSMUSG00000048924	Ccdc125	5830436D01Rik|AL023012	coiled-coil domain containing 125	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-97582968-2	chr15	97582868	97583068	+	621.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	122854.0	NM_028003	71919.0	Mm.12255	NM_028003	ENSMUSG00000022466	Rpap3	2310042P20Rik|D15Ertd682e	RNA polymerase II associated protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4008703-1	chr19	4008603	4008803	+	553.0	f1_c57bl6.idr	exon (NM_133666, exon 6 of 10)	exon (NM_133666, exon 6 of 10)	4052.0	NM_133666	17995.0	Mm.29842	NM_133666	ENSMUSG00000037916	Ndufv1	CI-51kD	NADH dehydrogenase (ubiquinone) flavoprotein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-72711097-2	chr5	72710997	72711197	+	808.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289494, intron 8 of 13)	intron (NM_001289494, intron 8 of 13)	25505.0	NM_013698	22165.0	Mm.3264	NM_013698	ENSMUSG00000054892	Txk	A130089B16Rik|Btkl|PTK-RL-18|PTK4|Rlk	TXK tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35995197-2	chr17	35995097	35995297	+	883.083374	f1_balb.idr|f1_c57bl6.idr	intron (NR_015618, intron 1 of 1)	B4|SINE|B4	693.0	NR_015618	77810.0	Mm.483143	NR_015618		A930015D03Rik	-	RIKEN cDNA A930015D03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80569906-4	chr10	80569811	80570011	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_078477, intron 1 of 1)	intron (NM_078477, intron 1 of 1)	7385.0	NM_078477	118445.0	Mm.41513	NM_078477	ENSMUSG00000035397	Klf16	AI843742|BTEB4|DRRF	Kruppel-like factor 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-74955659-2	chr5	74955559	74955759	+	882.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045866, intron 1 of 4)	intron (NR_045866, intron 1 of 4)	6465.0	NR_045866	619945.0	Mm.359372	NM_001037908	ENSMUSG00000072874	Gm6116	EG619945	predicted gene 6116	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-14351669-4	chr14	14351503	14351703	+	872.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008369, intron 9 of 11)	intron (NM_008369, intron 9 of 11)	5108.0	NM_008369	16188.0	Mm.425857	NM_008369	ENSMUSG00000068758	Il3ra	CD123|CDw123|SUT-1	interleukin 3 receptor, alpha chain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-87335425-2	chr6	87335325	87335525	+	677.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_054041, exon 1 of 18)	exon (NM_054041, exon 1 of 18)	350.0	NM_054041	69538.0	Mm.232525	NM_054041	ENSMUSG00000033420	Antxr1	2310008J16Rik|2810405N18Rik|Antrx1|Tem8	anthrax toxin receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-32533327-4	chr16	32533200	32533400	+	981.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37019.0	NM_199309	245308.0	Mm.76859	NM_199309	ENSMUSG00000052363	Zdhhc19	Gm1744|Gm616	zinc finger, DHHC domain containing 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-17223442-2	chr10	17223342	17223542	+	596.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-127660.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-112985943-3	chr5	112985823	112986023	+	872.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285806, intron 1 of 20)	MTE2b|LTR|ERVL-MaLR	29615.0	NM_001285806	320129.0	Mm.285619	NM_177078	ENSMUSG00000042249	Grk3	4833444A01Rik|AI851927|AW551196|Adrbk-2|Adrbk2|Bark-2	G protein-coupled receptor kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-155494604-4	chr1	155494497	155494697	+	924.645874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32514.0	NR_132128	433367.0	Mm.359304	NR_132128	ENSMUSG00000073535	Gm5532	EG433367	predicted gene 5532	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56611556-4	chr17	56611475	56611675	+	779.549988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1804.0	NM_153152	224904.0	Mm.34002	NM_153152	ENSMUSG00000049760	2410015M20Rik	Mic13|QIL1|sr104	RIKEN cDNA 2410015M20 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-128769677-5	chr4	128769616	128769816	+	833.328552	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001009819)	TTS (NM_001009819)	10458.0	NM_001009819	215493.0	Mm.300900	NM_001009819	ENSMUSG00000028794	A3galt2	Gm433|iGb3|iGb3S	alpha 1,3-galactosyltransferase 2 (isoglobotriaosylceramide synthase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-11965890-2	chr4	11965790	11965990	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040577)	promoter-TSS (NR_040577)	91.0	NM_001290387	381511.0	Mm.331489	NM_001033453	ENSMUSG00000049225	Pdp1	Gm1024|Ppm2c	pyruvate dehyrogenase phosphatase catalytic subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-79361425-2	chr15	79361421	79361621	+	974.2999880000001	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001253817, exon 9 of 9)	3' UTR (NM_001253817, exon 9 of 9)	13119.0	NM_001304832	17133.0	Mm.86646	NM_010755	ENSMUSG00000042622	Maff	-	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein F (avian)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-184631501-1	chr1	184631401	184631601	+	653.0	f0_balb.idr	Intergenic	Intergenic	-73810.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-26438112-3	chr4	26438013	26438213	+	964.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-91461.0	NM_172865	242362.0	Mm.245602	NM_172865	ENSMUSG00000040520	Manea	4932703L02Rik	mannosidase, endo-alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-83606959-2	chr8	83606859	83607059	+	731.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1216.0	NM_018808	81489.0	Mm.282092	NM_018808	ENSMUSG00000005483	Dnajb1	0610007I11Rik|DjB1|HSPF1|Hdj1|Hsp40	DnaJ heat shock protein family (Hsp40) member B1	protein-coding	0.804677621569298	1.67692662655168	0.642119988080237	1.88524248106551	0.610877447770868	1.57679592134787	0.645707839014338	0.854768612987682	-1.34764910234212	0.372782179006176	0.865215270489328
Merged-chr10-43997144-2	chr10	43997044	43997244	+	705.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_172393, exon 2 of 20)	exon (NM_172393, exon 2 of 20)	7702.0	NM_172393	11630.0	Mm.292082	NM_172393	ENSMUSG00000019866	Crybg1	AI462491|AI463325|Aim1	crystallin beta-gamma domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-136633827-4	chr1	136633716	136633916	+	881.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8915.0	NM_001160251	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-20733079-2	chr16	20732979	20733179	+	871.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009893)	promoter-TSS (NM_009893)	-48.0	NM_001354996	12667.0	Mm.20457	NM_009893	ENSMUSG00000006958	Chrd	Chd	chordin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-95851798-2	chr11	95851720	95851920	+	984.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6997.0	NR_045187	73906.0	Mm.399894	NR_045187	ENSMUSG00000086015	4833417C18Rik	-	RIKEN cDNA 4833417C18 gene	ncRNA	1.67131271845551	2.01370013180918	1.94600754651739	2.53811310492825	2.28450641502524	1.70471252646534	1.22000676610901	1.90142843681939	-0.639310969999657	0.530148764601798	0.950119915711771
Merged-chr14-8216934-2	chr14	8216834	8217034	+	905.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001305937, intron 1 of 2)	intron (NM_001305937, intron 1 of 2)	686.0	NM_001305937	71393.0	Mm.292712	NM_027782	ENSMUSG00000021752	Kctd6	5430433B02Rik|AU044285	potassium channel tetramerisation domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-132004474-2	chr2	132004374	132004574	+	585.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175445, intron 5 of 10)	intron (NM_175445, intron 5 of 10)	25514.0	NM_175445	215653.0	Mm.204737	NM_175445	ENSMUSG00000027339	Rassf2	3830431H01Rik|9030412M04Rik|AI852669|AW495050	Ras association (RalGDS/AF-6) domain family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-106156916-2	chr8	106156815	106157015	+	707.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357319, intron 2 of 5)	intron (NM_001357319, intron 2 of 5)	6561.0	NM_001357319	192654.0	Mm.284770	NM_133792	ENSMUSG00000031903	Pla2g15	ACS|C87498|LLPL|Lpla2|Lypla3	phospholipase A2, group XV	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84663604-2	chr8	84663504	84663704	+	994.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010499)	promoter-TSS (NM_010499)	-752.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	1.48918708941277	1.19281409287139	1.73197506140022	1.48694002284067	1.31099637778955	0.789375838564461	0.776021704833065	0.764446858848785	-2.43525406573726	0.0935598726762238	0.473989003707998
Merged-chr18-34410945-2	chr18	34410844	34411044	+	1000.0	f0_balb.idr|f1_balb.idr	intron (NM_016927, intron 2 of 14)	B3|SINE|B2	1521.0	NM_016927	53871.0	Mm.445792	NM_016927	ENSMUSG00000014503	Pkd2l2	TRPP5	polycystic kidney disease 2-like 2	protein-coding	3.3735988197895	3.54281076183735	3.13532060304926	2.52847447193705	6.67707798541434	6.81024597292239	6.60664060994612	6.096278701714	4.0371396136975	5.84175985852914e-28	2.10268304347898e-24
Merged-chr10-91138475-4	chr10	91138380	91138580	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-14517.0	NM_133668	18674.0	Mm.298	NM_133668	ENSMUSG00000061904	Slc25a3	5730556H19Rik|PTP|Phc	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-27155407-2	chr9	27155307	27155507	+	561.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023277)	promoter-TSS (NM_023277)	14.0	NM_023277	83964.0	Mm.28770	NM_023277	ENSMUSG00000031990	Jam3	1110002N23Rik|JAM-3|JAM-C|Jcam3	junction adhesion molecule 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-106769110-4	chr6	106769023	106769223	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027296)	promoter-TSS (NM_027296)	-15.0	NM_001242358	70047.0	Mm.196332	NM_027296	ENSMUSG00000013736	Trnt1	2410043H24Rik|2610044E04Rik|9830143O18Rik|AA408384|C76540|CGI-47|mt-Trat	tRNA nucleotidyl transferase, CCA-adding, 1	protein-coding	5.7450049493682	5.46319670623751	4.98094408807977	5.51033218048533	5.03717831673213	5.73338513557983	5.2746926009663	5.16507540081077	-0.15823175506679	0.597936315339268	0.972179950055182
Merged-chr4-129792603-3	chr4	129792504	129792704	+	939.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-27875.0	NM_008974	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	3.40376912719682	2.37837477043121	2.46001948140852	2.76474048664692	3.06931683444311	2.39586048950299	3.31756743358619	3.21950603115273	0.387050078518502	0.578600295154371	0.965985075107763
Merged-chr9-25482005-3	chr9	25481911	25482111	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 1 of 7)	intron (NM_026189, intron 1 of 7)	414.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-95856971-2	chr9	95856871	95857071	+	789.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019864)	promoter-TSS (NM_019864)	546.0	NR_073361	73410.0	Mm.443314	NM_028533	ENSMUSG00000096655	1700065D16Rik	-	RIKEN cDNA 1700065D16 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-128877637-2	chr4	128877537	128877737	+	617.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6503.0	NM_178110	67525.0	Mm.30653	NM_178110	ENSMUSG00000041000	Trim62	6330414G21Rik|AI450348|Dear1	tripartite motif-containing 62	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-58747005-2	chr1	58746905	58747105	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355056, intron 7 of 8)	intron (NM_001355056, intron 7 of 8)	16453.0	NM_001293805	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-102043929-3	chr5	102043825	102044025	+	792.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 1 of 66)	intron (NM_172882, intron 1 of 66)	25996.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-99250847-3	chr10	99250715	99250915	+	883.488892	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12416.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91378203-2	chr16	91378103	91378303	+	749.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347258, intron 1 of 7)	intron (NM_001347258, intron 1 of 7)	5420.0	NM_001110498	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-12325648-2	chr12	12325548	12325748	+	772.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001146119, intron 2 of 11)	intron (NM_001146119, intron 2 of 11)	63509.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-72084374-4	chr12	72084267	72084467	+	950.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026038, intron 1 of 4)	intron (NM_026038, intron 1 of 4)	946.0	NM_026038	67217.0	Mm.286120	NM_026038	ENSMUSG00000019718	L3hypdh	2810055F11Rik	L-3-hydroxyproline dehydratase (trans-)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-152480657-2	chr3	152480557	152480757	+	780.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081277, intron 11 of 13)	B4A|SINE|B4	83973.0	NM_001287139	108946.0	Mm.379292	NM_198416	ENSMUSG00000039068	Zzz3	3110065C23Rik|6430567E01Rik|AA408566|AI481057|AW556059|R75514	zinc finger, ZZ domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-120670454-5	chr7	120670420	120670620	+	749.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001040137)	promoter-TSS (NM_001040137)	-177.0	NM_001040136	67983.0	Mm.394441	NM_001040136	ENSMUSG00000030887	Pdzd9	4930408O21Rik	PDZ domain containing 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-34522250-6	chr19	34522153	34522353	+	873.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111100, intron 3 of 9)	intron (NM_001111100, intron 3 of 9)	5221.0	NM_001111100	16889.0	Mm.157545	NM_021460	ENSMUSG00000024781	Lipa	AA960673|Lal|Lip-1|Lip1	lysosomal acid lipase A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25710041-2	chr7	25709941	25710141	+	937.0833130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9012.0	NM_028771	52132.0	Mm.278798	NM_028771	ENSMUSG00000002608	Ccdc97	1200014H14Rik|2810446P04Rik|AA545218|D7Ertd462e	coiled-coil domain containing 97	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-43818894-4	chr5	43818830	43819030	+	957.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009763)	promoter-TSS (NM_009763)	37.0	NM_009763	12182.0	Mm.246332	NM_009763	ENSMUSG00000029082	Bst1	114/A10|A530073F09|BP-3|Bp3|Bsta1|CD157|Ly65	bone marrow stromal cell antigen 1	protein-coding	3.13299603006986	3.66896928718772	2.43485759254202	2.91954751929446	3.61535335370618	3.53532969430184	3.14026939627265	3.72949479615476	0.665668451043576	0.262687983075515	0.764117606499117
Merged-chr18-77946957-4	chr18	77946863	77947063	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195633, intron 1 of 43)	MTE-int|LTR|ERVL-MaLR	8496.0	NM_001195633	100502841.0	Mm.297782	NM_001195633	ENSMUSG00000039840	Epg5	4732475F16|5430411K18Rik|AI661957|AW456499|mKIAA1632	ectopic P-granules autophagy protein 5 homolog (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118138813-2	chr11	118138713	118138913	+	913.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19A|LTR|ERVK	-9594.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-24624607-4	chr16	24624533	24624733	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 5 of 12)	intron (NM_178665, intron 5 of 12)	95319.0	NR_038091	624582.0	Mm.439775	NR_038091		Morf4l1-ps1	A730098P11Rik	mortality factor 4 like 1, pseudogene 1	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-43757289-4	chr10	43757152	43757352	+	947.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040581, intron 1 of 3)	intron (NR_040581, intron 1 of 3)	11094.0	NR_040581	69443.0	Mm.484042	NR_040581	ENSMUSG00000111422	1700027J07Rik	-	RIKEN cDNA 1700027J07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117454492-4	chr8	117454479	117454679	+	986.361084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028941, intron 17 of 20)	intron (NM_028941, intron 17 of 20)	1556.0	NR_106045	102466801.0		NR_106045	ENSMUSG00000099062	Mir7077	Gm27774|mmu-mir-7077	microRNA 7077	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-83060948-2	chr7	83060848	83061048	+	715.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-87522.0	NM_177895	330578.0	Mm.5796	NM_177895	ENSMUSG00000053528	A530021J07Rik	-	Riken cDNA A530021J07 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-38456803-4	chr16	38456739	38456939	+	899.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2094.0	NM_001359898	12519.0	Mm.89474	NM_009855	ENSMUSG00000075122	Cd80	B71|Cd28l|Ly-53|Ly53|MIC17|TSA1	CD80 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-44119922-4	chr16	44119821	44120021	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007508, intron 1 of 14)	intron (NM_007508, intron 1 of 14)	19338.0	NM_001358203	11964.0	Mm.217787	NM_007508	ENSMUSG00000052459	Atp6v1a	AI647066|Atp6a1|Atp6a2|Atp6v1a1|VA68|VPP2	ATPase, H+ transporting, lysosomal V1 subunit A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-16067402-3	chr19	16067303	16067503	+	846.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65428.0	NM_008139	14682.0	Mm.439701	NM_008139	ENSMUSG00000024639	Gnaq	1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI	guanine nucleotide binding protein, alpha q polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26562812-2	chr17	26562712	26562912	+	802.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026170, intron 1 of 9)	intron (NM_026170, intron 1 of 9)	1300.0	NM_026170	67458.0	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-57022947-4	chr13	57022812	57023012	+	813.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-127123.0	NM_001302373	26946.0	Mm.62409	NM_012035	ENSMUSG00000021541	Trpc7	TRP7|Trrp8	transient receptor potential cation channel, subfamily C, member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-75846446-4	chr2	75846347	75846547	+	657.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172666, intron 1 of 19)	B1_Mus1|SINE|Alu	14270.0	NM_172666	228061.0	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107526417-1	chr9	107526317	107526517	+	615.0	f1_c57bl6.idr	intron (NM_001174048, intron 33 of 37)	intron (NM_001174048, intron 33 of 37)	-7528.0	NM_019704	56395.0	Mm.260153	NM_019704	ENSMUSG00000010045	Tmem115	C78915|Pl6|Pp6	transmembrane protein 115	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85341340-4	chr12	85341234	85341434	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_026775, exon 5 of 5)	3' UTR (NM_026775, exon 5 of 5)	-1972.0	NM_145138	217718.0	Mm.29071	NM_145138	ENSMUSG00000034290	Nek9	C130021H08Rik	NIMA (never in mitosis gene a)-related expressed kinase 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33621528-3	chr16	33621430	33621630	+	659.111145	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134251, intron 8 of 12)	intron (NM_134251, intron 8 of 12)	-62936.0	NM_175256	77446.0	Mm.245741	NM_172934	ENSMUSG00000075254	Heg1	4632417D23Rik|5530401I02Rik|9530025L16Rik|BC038614|Gm629	heart development protein with EGF-like domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-44025956-2	chr16	44025856	44026056	+	698.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359085, intron 5 of 16)	RMER20B|LTR|ERVK	1989.0	NM_001172107	207798.0	Mm.19316	NM_153528	ENSMUSG00000036292	Gramd1c	4921521N14Rik	GRAM domain containing 1C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-29240475-2	chr7	29240375	29240575	+	667.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357664, intron 1 of 7)	intron (NM_001357664, intron 1 of 7)	2018.0	NM_001357664	77254.0	Mm.36699	NM_029887	ENSMUSG00000030588	Yif1b	9430029K10Rik|Yip1b	Yip1 interacting factor homolog B (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24352783-3	chr17	24352675	24352875	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039581, intron 1 of 31)	intron (NM_001039581, intron 1 of 31)	752.0	NM_001039581	27410.0	Mm.239470	NM_013855	ENSMUSG00000024130	Abca3	1810036E22Rik|ABC-C|Abc3	ATP-binding cassette, sub-family A (ABC1), member 3	protein-coding	3.0889579918532	2.64255012959566	3.2682539029701	3.3729223293965	4.85538611127082	4.52405950533234	4.68905660324056	4.05026267716748	2.01223661879151	3.06781557771006e-05	0.00117471227557549
Merged-chr5-103937688-3	chr5	103937600	103937800	+	760.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28|LTR|ERVL	-26441.0	NM_001359986	246293.0	Mm.179871	NM_178741	ENSMUSG00000029312	Klhl8	2310001P09Rik|D5Ertd431e	kelch-like 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-7417414-3	chr19	7417239	7417439	+	607.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175381)	promoter-TSS (NM_175381)	-286.0	NM_175381	108899.0	Mm.386838	NM_175381	ENSMUSG00000053080	2700081O15Rik	AI255177|AI848741|AW742297	RIKEN cDNA 2700081O15 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-184618235-4	chr1	184618135	184618335	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60544.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	6.04761911952112	5.54278306577686	5.96347844943972	5.62925466740639	5.96437169493355	5.64008974121924	5.3190312709065	5.95168173516155	-0.0753725097117244	0.774356922105151	0.998431161219273
Merged-chr1-136172363-2	chr1	136172263	136172463	+	566.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039472, intron 33 of 34)	intron (NM_001039472, intron 33 of 34)	40465.0	NM_001329610	76422.0	Mm.159735	NM_001329610		Mroh3	2310006M14Rik	maestro heat-like repeat family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-117432253-2	chr2	117432153	117432353	+	573.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-89376.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-125756765-4	chr8	125756655	125756855	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175561, intron 32 of 33)	intron (NM_175561, intron 32 of 33)	22552.0	NM_001310688	66566.0	Mm.25296	NM_025636	ENSMUSG00000031851	Ntpcr	2310079N02Rik|AI449709	nucleoside-triphosphatase, cancer-related	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-95688094-2	chr11	95687994	95688194	+	902.6666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21137.0	NM_008831	18673.0	Mm.263862	NM_008831	ENSMUSG00000038845	Phb	Bap32	prohibitin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-150151448-2	chr1	150151348	150151548	+	699.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13500.0	NR_110420	102639566.0	Mm.417208	NR_110420	ENSMUSG00000097754	Ptgs2os2	Gm26687|Linc-cox2|Lincrna-cox2	prostaglandin-endoperoxide synthase 2, opposite strand 2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-55547324-4	chr15	55547230	55547430	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026759, intron 3 of 6)	B3|SINE|B2	9982.0	NM_026759	68537.0	Mm.236795	NM_026759	ENSMUSG00000022370	Mrpl13	1110002D09Rik	mitochondrial ribosomal protein L13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-69167311-2	chr12	69167211	69167411	+	917.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1503.0	NR_155206	69706.0	Mm.28847	NM_001081406	ENSMUSG00000034883	Lrr1	2410005L11Rik|AU021780|LRR-1|Ppil5	leucine rich repeat protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-86362880-3	chr15	86362780	86362980	+	754.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358062, intron 6 of 9)	intron (NM_001358062, intron 6 of 9)	85205.0	NM_001358062	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-27395390-2	chr16	27395290	27395490	+	717.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025615, intron 1 of 9)	intron (NM_001025615, intron 1 of 9)	6434.0	NM_001289436	67501.0	Mm.258985	NM_026202	ENSMUSG00000038127	Ccdc50	C3orf6	coiled-coil domain containing 50	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-37361970-1	chr11	37361870	37362070	+	540.0	f1_balb.idr	Intergenic	Intergenic	-297019.0	NR_131154	100039148.0	Mm.120467	NR_131154	ENSMUSG00000087388	Gm12128	-	predicted gene 12128	ncRNA	0.271635058066177	-0.23422779515378	-0.238066480030525	0.0389359001788482	-0.111415855447278	-0.233359399820138	0.0698572162804743	-0.240499052521648	-0.996376335514545	0.666058251399597	1
Merged-chr6-145069592-1	chr6	145069492	145069692	+	617.0	f1_balb.idr	intron (NM_007532, intron 1 of 10)	intron (NM_007532, intron 1 of 10)	6565.0	NM_007532	12035.0	Mm.4606	NM_007532	ENSMUSG00000030268	Bcat1	BCATc|Eca39	branched chain aminotransferase 1, cytosolic	protein-coding	1.9724766281332	1.79934263677956	2.06402469778732	2.00088248831146	1.18214084617634	1.05029262307635	1.03038159099481	1.69312019110443	-2.37345134148568	0.0463401473768532	0.31095586589904
Merged-chr2-156515891-2	chr2	156515792	156515992	+	663.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291122, intron 14 of 20)	intron (NM_001291122, intron 14 of 20)	-31684.0	NM_026661	68295.0	Mm.253648	NM_026661	ENSMUSG00000027628	Aar2	0610011L14Rik	AAR2 splicing factor homolog	protein-coding	3.28712868066608	4.39615780514847	4.46413093497509	2.63873722685564	3.06963729363841	2.85596449810068	1.95311664389966	3.63150821411681	-1.3287351871537	0.0488598509043375	0.321981229119503
Merged-chr19-46314215-2	chr19	46314115	46314315	+	564.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001347454, exon 15 of 18)	exon (NM_001347454, exon 15 of 18)	8285.0	NM_001177370	18034.0	Mm.102365	NM_019408	ENSMUSG00000025225	Nfkb2	NF-kappaB2|lyt|p49|p49/p100|p50B|p52	nuclear factor of kappa light polypeptide gene enhancer in B cells 2, p49/p100	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-158615591-2	chr2	158615491	158615691	+	710.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009508, exon 2 of 2)	3' UTR (NM_009508, exon 2 of 2)	4833.0	NM_009508	22348.0	Mm.143404	NM_009508	ENSMUSG00000037771	Slc32a1	R75019|VGAT|Viaat	solute carrier family 32 (GABA vesicular transporter), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-122953683-4	chr10	122953589	122953789	+	896.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4|LINE|L1	32035.0	NR_029527	387251.0		NR_029527	ENSMUSG00000065406	Mirlet7i	Mirnlet7i|let-7i|mmu-let-7i	microRNA let7i	ncRNA	5.71624352349431	5.59593100994684	4.93828327144574	5.58307501990816	5.19174637292079	4.58291677627675	4.16965052782276	4.66284699914185	-0.916793195572641	0.00692082801678114	0.0845474613779278
Merged-chr11-72461796-4	chr11	72461679	72461879	+	922.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153060, intron 3 of 12)	L1ME3Cz|LINE|L1	13248.0	NM_001276383	216892.0	Mm.212812	NM_153060	ENSMUSG00000040447	Spns2	-	spinster homolog 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-127169146-3	chr4	127169045	127169245	+	931.0277710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198618)	promoter-TSS (NM_198618)	-59.0	NM_198618	242667.0	Mm.331885	NM_198618	ENSMUSG00000042388	Dlgap3	BC058433|DAP-3|DAP3|Prpl8|Sapap3	DLG associated protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128458518-4	chr10	128458414	128458614	+	989.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_106183)	promoter-TSS (NR_106183)	-166.0	NR_106183	102465894.0		NR_106183	ENSMUSG00000098957	Mir8105	Gm27346|mmu-mir-8105	microRNA 8105	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-118622139-2	chr5	118622039	118622239	+	848.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347445, intron 2 of 30)	MTC|LTR|ERVL-MaLR	61420.0	NM_172424	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-43777544-4	chr13	43777426	43777626	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-7586.0	NM_009856	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-117884579-4	chr5	117884471	117884671	+	887.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008712, intron 2 of 27)	ORR1E|LTR|ERVL-MaLR	17732.0	NM_008712	18125.0	Mm.44249	NM_008712	ENSMUSG00000029361	Nos1	2310005C01Rik|N-NOS|NC-NOS|NO|NOS|NOS-I|Nos-1|bNOS|nNOS	nitric oxide synthase 1, neuronal	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-76481700-2	chr11	76481600	76481800	+	765.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346670, intron 2 of 21)	intron (NM_001346670, intron 2 of 21)	12795.0	NM_001346670	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-98846370-2	chr15	98846229	98846429	+	588.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_001033276, exon 40 of 55)	exon (NM_001033276, exon 40 of 55)	-14821.0	NM_016781	19082.0	Mm.6670	NM_016781	ENSMUSG00000067713	Prkag1	AA571379|BB036179|Prkaac	protein kinase, AMP-activated, gamma 1 non-catalytic subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-120016898-4	chr4	120016792	120016992	+	943.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010657, intron 2 of 8)	intron (NM_010657, intron 2 of 8)	-144314.0	NM_007902	13615.0	Mm.284855	NM_007902	ENSMUSG00000028635	Edn2	ET-2|PPET2|VIC	endothelin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-18954155-4	chr8	18954055	18954255	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3180.0	NM_001113350	319581.0	Mm.111354	NM_176951	ENSMUSG00000039814	Xkr5	5430438H03Rik|XRG5	X-linked Kx blood group related 5	protein-coding	4.78865017931894	6.05506027621481	4.83465660120572	5.33485070927529	5.53934951023283	5.7416157184455	4.32931263668604	5.21090208518777	-0.0533603855387436	0.88766776309053	0.998431161219273
Merged-chr8-35380130-4	chr8	35380026	35380226	+	982.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177741, intron 1 of 1)	intron (NM_177741, intron 1 of 1)	4385.0	NM_177741	244416.0	Mm.247126	NM_177741	ENSMUSG00000046794	Ppp1r3b	6430576E21|AW821953|GL|PTG	protein phosphatase 1, regulatory (inhibitor) subunit 3B	protein-coding	0.705246672516449	1.08735127815791	0.626409839230978	0.433399892679184	0.712564048366011	1.21134255846368	0.631858900603085	0.434532129688894	0.254833168280833	0.874527276646822	1
Merged-chr5-114923125-4	chr5	114923048	114923248	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145209)	promoter-TSS (NM_145209)	-92.0	NM_001359946	231655.0	Mm.95479	NM_145209	ENSMUSG00000041827	Oasl1	7530414C13Rik|oasl9	2'-5' oligoadenylate synthetase-like 1	protein-coding	3.7563498716669	2.89666422289501	3.05304948942127	3.94606671535179	3.92996577967043	3.76351190779926	3.84959096043663	2.2036904665983	0.147074024514003	0.81284560267171	0.998431161219273
Merged-chr13-94476496-3	chr13	94476440	94476640	+	893.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009680, intron 17 of 26)	intron (NM_009680, intron 17 of 26)	117580.0	NM_009680	11774.0	Mm.21185	NM_009680	ENSMUSG00000021686	Ap3b1	AP-3|AU015684|C78395|Hps2|beta3A|pe|pearl|rim2	adaptor-related protein complex 3, beta 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-27746467-2	chr10	27746367	27746567	+	665.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-129525.0	NM_008481	16773.0	Mm.256087	NM_008481	ENSMUSG00000019899	Lama2	5830440B04|dy|mKIAA4087|mer|merosin	laminin, alpha 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-33952166-1	chr17	33952066	33952266	+	725.0	f1_c57bl6.idr	promoter-TSS (NM_019420)	promoter-TSS (NM_019420)	-678.0	NM_019420	54218.0	Mm.11132	NM_019420	ENSMUSG00000067370	B3galt4	Gal-T2|Galt2	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 4	protein-coding	0.555156685761518	0.0583094058056948	0.0513396638975251	1.06026119819971	0.0382161403784594	0.0598732580316718	0.0528814686974088	0.385340203856836	-2.52614742351871	0.245628080363369	1
Merged-chr2-167906489-2	chr2	167906389	167906589	+	842.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25838.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-54228200-2	chr13	54228100	54228300	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153432, intron 3 of 3)	intron (NR_153432, intron 3 of 3)	36067.0	NR_153432	15466.0	Mm.57243	NM_008286	ENSMUSG00000034987	Hrh2	H2R|HH2R	histamine receptor H2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-86753565-4	chr17	86753460	86753660	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010137)	promoter-TSS (NM_010137)	-304.0	NM_010137	13819.0	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-108235539-3	chr11	108235442	108235642	+	946.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011101, intron 2 of 16)	intron (NM_011101, intron 2 of 16)	108346.0	NM_011101	18750.0	Mm.222178	NM_011101	ENSMUSG00000050965	Prkca	AI875142|Pkca	protein kinase C, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-77793923-2	chr18	77793823	77794023	+	574.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013831)	promoter-TSS (NM_013831)	-627.0	NM_013831	19201.0	Mm.57174	NM_013831	ENSMUSG00000025429	Pstpip2	MAYP|cmo	proline-serine-threonine phosphatase-interacting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-83262271-3	chr4	83262247	83262447	+	892.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027238, intron 4 of 19)	ID_B1|SINE|B4	61842.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	0.171306167932046	0.271246448847778	-0.0745191482521181	-0.0781522400242144	0.177674463426911	0.532347456287736	-0.0734791844648179	-0.0775180814724772	0.711206671210949	0.742672424038744	1
Merged-chr5-34531071-2	chr5	34531034	34531234	+	760.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011893, intron 1 of 12)	intron (NM_011893, intron 1 of 12)	5350.0	NM_011893	24055.0	Mm.5012	NM_011893	ENSMUSG00000054520	Sh3bp2	3BP2	SH3-domain binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-149267110-4	chr5	149267013	149267213	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009663, intron 1 of 4)	intron (NM_009663, intron 1 of 4)	2109.0	NM_009663	11690.0	Mm.19844	NM_009663	ENSMUSG00000060063	Alox5ap	Flap	arachidonate 5-lipoxygenase activating protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30042773-2	chr2	30042673	30042873	+	783.299988	f1_balb.idr|f1_c57bl6.idr	intron (NM_001008498, intron 1 of 8)	intron (NM_001008498, intron 1 of 8)	6106.0	NM_001008498	71820.0	Mm.88053	NM_001008498	ENSMUSG00000039715	Wdr34	3200002I06Rik	WD repeat domain 34	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-44407534-3	chr19	44407427	44407627	+	858.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_009127, exon 1 of 6)	5' UTR (NM_009127, exon 1 of 6)	182.0	NM_009127	20249.0	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19580188-2	chr7	19580088	19580288	+	632.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_125835)	TTS (NR_125835)	2901.0	NM_022409	63872.0	Mm.23310	NM_022409	ENSMUSG00000011267	Zfp296	2210018A16Rik|Znf296	zinc finger protein 296	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-122355651-1	chr9	122355551	122355751	+	579.0	f1_balb.idr	intron (NM_001359207, intron 1 of 4)	B4A|SINE|B4	4035.0	NM_026179	67469.0	Mm.280254	NM_026179	ENSMUSG00000032540	Abhd5	1300003D03Rik|2010002J10Rik|CDS|CGI-58|IECN5|NCIE2	abhydrolase domain containing 5	protein-coding	-0.039762275702552	-0.343355933068341	-0.346211616495782	-0.211947577274064	-0.032662718754116	-0.342707128545547	-0.345584943257749	-0.0901817327258398	0.384987339482499	0.872031583102696	1
Merged-chr1-134803791-4	chr1	134803675	134803875	+	965.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015606)	promoter-TSS (NR_015606)	-54.0	NR_015606	329251.0	Mm.188709	NM_001081307	ENSMUSG00000073557	Ppp1r12b	1810037O03Rik|9530009M10Rik|AI132431|Mypt2	protein phosphatase 1, regulatory (inhibitor) subunit 12B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-4310932-4	chr9	4310834	4311034	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164574, intron 1 of 2)	L2|LINE|L2	1118.0	NM_026962	69149.0	Mm.25946	NM_026962	ENSMUSG00000025893	Kbtbd3	2200003A07Rik|Bklhd3	kelch repeat and BTB (POZ) domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-66578535-3	chr15	66578467	66578667	+	665.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081409, intron 1 of 20)	intron (NM_001081409, intron 1 of 20)	995.0	NM_001081409	239510.0	Mm.267473	NM_178718	ENSMUSG00000072501	Phf20l1	CGI-72|E130113K22Rik	PHD finger protein 20-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4464855-4	chr16	4464716	4464916	+	920.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44318.0	NM_009624	11515.0	Mm.439750	NM_009624	ENSMUSG00000005580	Adcy9	AC9|ACtp10|AW125421|D16Wsu65e|mKIAA0520	adenylate cyclase 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102361397-1	chr12	102361297	102361497	+	959.0	f1_balb.idr	intron (NM_177620, intron 5 of 9)	intron (NM_177620, intron 5 of 9)	77756.0	NM_001161365	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	-0.75913952209841	-0.997742044469986	-1.00900354158192	-1.0117417821143	-0.874053535568008	-0.65714573069358	-1.00645418548077	-1.01140974433652	0.824769849949992	0.783096736991271	1
Merged-chr11-54788468-3	chr11	54788364	54788564	+	742.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178626)	promoter-TSS (NM_178626)	-761.0	NM_178626	72729.0	Mm.29476	NM_178626	ENSMUSG00000052298	Cdc42se2	2810404F18Rik|AA408783|AA536669|SPEC2	CDC42 small effector 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-123236271-4	chr8	123236162	123236362	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357300)	promoter-TSS (NM_001357300)	-4.0	NM_030176	78779.0	Mm.41459	NM_030176	ENSMUSG00000033594	Spata2l	2610039E05Rik|AI648233	spermatogenesis associated 2-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99263704-3	chr7	99263602	99263802	+	988.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_103487, exon 3 of 4)	non-coding (NR_103487, exon 3 of 4)	3516.0	NR_103487	381967.0	Mm.261763	NR_103487	ENSMUSG00000097015	Gm26705	-	predicted gene, 26705	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-101715876-4	chr2	101715799	101715999	+	935.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001110849, exon 10 of 10)	3' UTR (NM_001110849, exon 10 of 10)	37479.0	NM_001303273	22034.0	Mm.292729	NM_009424	ENSMUSG00000027164	Traf6	2310003F17Rik|AI851288|C630032O20Rik	TNF receptor-associated factor 6	protein-coding	0.155018861665088	0.950350438616343	0.89101329755618	0.164693464217317	0.680269905099924	0.179583313644752	0.172119050780516	0.165705697585693	-1.7008895519617	0.416446334101763	1
Merged-chr16-76422572-2	chr16	76422472	76422672	+	563.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48745.0	NM_001358238	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-109410751-4	chr11	109410593	109410793	+	949.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15253.0	NM_025275	13929.0	Mm.211850	NM_025275	ENSMUSG00000020610	Amz2	AA408420|ESTM12|X83328	archaelysin family metallopeptidase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-135073838-1	chr6	135073738	135073938	+	842.0	f0_balb.idr	intron (NM_181444, intron 1 of 3)	intron (NM_181444, intron 1 of 3)	8176.0	NM_181444	232431.0	Mm.23575	NM_181444	ENSMUSG00000046733	Gprc5a	Rai3|Raig1	G protein-coupled receptor, family C, group 5, member A	protein-coding	0.667027885011282	0.709545064590871	1.37278951656544	0.685152103963514	1.45506503326216	0.712596322996237	1.50389764619246	1.7963136870869	2.21368440350381	0.15746967498022	0.614080550513332
Merged-chr11-87214378-2	chr11	87214278	87214478	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_197987, intron 22 of 23)	intron (NM_197987, intron 22 of 23)	87303.0	NM_197987	68729.0	Mm.17436	NM_197987	ENSMUSG00000018548	Trim37	1110032A10Rik|2810004E07Rik|AI848587|AU043018|MUL|TEF3|mKIAA0898	tripartite motif-containing 37	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-34752894-3	chr19	34752798	34752998	+	710.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5787.0	NM_172838	240638.0	Mm.74636	NM_172838	ENSMUSG00000009378	Slc16a12	3230401A21|AW210596	solute carrier family 16 (monocarboxylic acid transporters), member 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150789353-4	chr4	150789250	150789450	+	988.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-64446.0	NM_001356323	74155.0	Mm.318841	NM_133753	ENSMUSG00000028967	Errfi1	1300002F13Rik|AI788755|Mig-6|Mig6|RALT	ERBB receptor feedback inhibitor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133753860-2	chr4	133753760	133753960	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080819)	promoter-TSS (NM_001080819)	-249.0	NM_001080819	93760.0	Mm.22478	NM_001080819	ENSMUSG00000007880	Arid1a	1110030E03Rik|BAF250a|Osa1|Smarcf1	AT rich interactive domain 1A (SWI-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-41620974-4	chr10	41620879	41621079	+	882.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358562, intron 23 of 47)	intron (NM_001358562, intron 23 of 47)	52963.0	NR_045341	70538.0	Mm.399807	NR_045341	ENSMUSG00000091370	5730435O14Rik	-	RIKEN cDNA 5730435O14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-77917287-4	chr9	77917175	77917375	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134255)	promoter-TSS (NM_134255)	-90.0	NM_134255	68801.0	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44506246-2	chr9	44506146	44506346	+	635.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_030256, exon 7 of 9)	exon (NM_030256, exon 7 of 9)	7110.0	NM_030256	80288.0	Mm.370270	NM_030256	ENSMUSG00000063382	Bcl9l	B9L|BC003321|BCL9-2|DLNB11	B cell CLL/lymphoma 9-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-39573942-4	chr6	39573876	39574076	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178873)	promoter-TSS (NM_178873)	100.0	NM_178873	57869.0	Mm.247957	NM_178873	ENSMUSG00000046947	Adck2	AA408112|BB006057	aarF domain containing kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-90043069-4	chr9	90042955	90043155	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1E2|LTR|ERVL-MaLR	-11212.0	NM_007801	13036.0	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	4.55134037762306	4.92169294250641	4.45674773828061	4.52859967201022	4.62110804418161	4.8694674743776	4.13594433647283	3.20987463592154	-0.360354187530605	0.406304303392658	0.891086832580755
Merged-chr7-127274096-4	chr7	127273998	127274198	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009266)	promoter-TSS (NM_009266)	-39.0	NM_009266	20768.0	Mm.20294	NM_009266	ENSMUSG00000049091	Sephs2	Sps2|Ysg3	selenophosphate synthetase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-120836641-2	chr7	120836541	120836741	+	982.1666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-6190.0	NM_007908	13631.0	Mm.25997	NM_007908	ENSMUSG00000035064	Eef2k	C86191|eEF-2K	eukaryotic elongation factor-2 kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-59239820-2	chr4	59239720	59239920	+	826.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20231.0	NR_105031	101055769.0	Mm.421401	NR_105031		Gm12596	-	predicted gene 12596	ncRNA	-0.305843050618757	0.00992955504048296	-0.299661794416625	-0.30200371618173	-0.305275758229706	0.0163805900122065	-0.29898828115509	0.158302592781534	1.56319881516399	0.538510278264662	1
Merged-chr2-32711781-1	chr2	32711681	32711881	+	540.0	f1_balb.idr	intron (NM_130860, intron 2 of 6)	intron (NM_130860, intron 2 of 6)	1003.0	NM_130860	107951.0	Mm.27557	NM_130860	ENSMUSG00000009555	Cdk9	PITALRE	cyclin-dependent kinase 9 (CDC2-related kinase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-31571515-4	chr5	31571406	31571606	+	977.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_102275)	promoter-TSS (NR_102275)	-109.0	NR_102275	100740.0	Mm.23370	NR_102275		AI839979	-	expressed sequence AI839979	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-122421268-2	chr9	122421168	122421368	+	993.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22467.0	NR_045967	654800.0	Mm.393956	NR_045967		A730085K08Rik	-	RIKEN cDNA A730085K08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-66438690-4	chr8	66438590	66438790	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175188, intron 6 of 7)	intron (NM_175188, intron 6 of 7)	47840.0	NM_025465	66282.0	Mm.294985	NM_025465	ENSMUSG00000025591	Tma16	1810029B16Rik	translation machinery associated 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-42262235-4	chr18	42262131	42262331	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134137)	promoter-TSS (NM_134137)	-160.0	NM_134137	107045.0	Mm.312170	NM_134137	ENSMUSG00000024493	Lars	2310045K21Rik|3110009L02Rik|AW536573|mKIAA1352	leucyl-tRNA synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-32786335-2	chr14	32786235	32786435	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163616, intron 1 of 4)	intron (NM_001163616, intron 1 of 4)	372.0	NM_001163616	69069.0	Mm.261609	NM_001163616	ENSMUSG00000041707	1810011H11Rik	4733401I05Rik	RIKEN cDNA 1810011H11 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124830534-2	chr6	124830434	124830634	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_013538, exon 2 of 6)	exon (NM_013538, exon 2 of 6)	358.0	NM_013538	14793.0	Mm.285723	NM_013538	ENSMUSG00000023505	Cdca3	2410005A12Rik|C8|Grcc8|Tome-1	cell division cycle associated 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-40123405-2	chr10	40123305	40123505	+	659.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 1 of 5)	intron (NM_001114332, intron 1 of 5)	18849.0	NM_028247	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-160044722-4	chr2	160044638	160044838	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	28085.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-152187298-4	chr2	152187201	152187401	+	859.68335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-39539.0	NM_007788	12995.0	Mm.23692	NM_007788	ENSMUSG00000074698	Csnk2a1	CK2|Csnk2a1-rs4	casein kinase 2, alpha 1 polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-148558543-4	chr2	148558457	148558657	+	885.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-114058.0	NM_019761	56488.0	Mm.34663	NM_019761	ENSMUSG00000036992	Nxt1	1110001N02Rik	NTF2-related export protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-67354601-4	chr17	67354510	67354710	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008984)	promoter-TSS (NM_008984)	-119.0	NM_001357625	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126593962-2	chr7	126593862	126594062	+	829.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145636, intron 1 of 4)	intron (NM_145636, intron 1 of 4)	948.0	NM_145636	246779.0	Mm.222632	NM_145636	ENSMUSG00000044701	Il27	IL-27|IL-27p28|Il30|p28	interleukin 27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-45923191-5	chr5	45923076	45923276	+	862.56665	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9233.0	NR_110478	78106.0	Mm.243807	NR_110478	ENSMUSG00000106602	4930405L22Rik	-	RIKEN cDNA 4930405L22 gene	ncRNA	3.87756345098144	4.20776989557257	4.01827583275301	4.42495136511051	2.47405251527907	3.47904462773871	3.0119501673468	3.52102996801504	-1.42581910315432	0.00632770603569992	0.0794140345359075
Merged-chr10-67026543-2	chr10	67026443	67026643	+	544.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_110511, intron 2 of 6)	intron (NR_110511, intron 2 of 6)	21468.0	NR_110511	102634101.0	Mm.445258	NR_110511	ENSMUSG00000112925	Gm31763	-	predicted gene, 31763	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47009655-2	chr17	47009555	47009755	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146078, intron 1 of 46)	intron (NM_146078, intron 1 of 46)	877.0	NM_146078	224826.0	Mm.28234	NM_146078	ENSMUSG00000023977	Ubr2	9930021A08Rik|AI462103|AW540746|E130209G04Rik|mKIAA0349	ubiquitin protein ligase E3 component n-recognin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-118533493-2	chr2	118533393	118533593	+	692.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001331221, intron 3 of 3)	intron (NM_001331221, intron 3 of 3)	11094.0	NR_138603	171543.0	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-61964406-2	chr17	61964306	61964506	+	727.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2B2|LINE|L1	916911.0	NM_207654	13640.0	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-74328327-3	chr17	74328218	74328418	+	753.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4374.0	NM_024428	66310.0	Mm.28536	NM_024428	ENSMUSG00000024067	Dpy30	2810410M20Rik|C87842	dpy-30, histone methyltransferase complex regulatory subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-149504925-4	chr4	149504815	149505015	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13326.0	NM_023465	67087.0	Mm.299735	NM_023465	ENSMUSG00000028988	Ctnnbip1	1110008O09Rik|2310001I19Rik|AW457332|Catnbip1|Icat	catenin beta interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-92250223-2	chr9	92250123	92250323	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011636)	promoter-TSS (NM_011636)	29.0	NM_011636	22038.0	Mm.421956	NM_011636	ENSMUSG00000032369	Plscr1	MmTRA1a|MmTRA1b|Nor1|Tra1|Tra1a|Tra1b|Tras1|Tras2	phospholipid scramblase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-88274533-4	chr17	88274440	88274640	+	861.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	149028.0	NM_001190356	225058.0	Mm.312053	NM_001190356		Gm4832	EG225058	predicted gene 4832	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-60679967-1	chr13	60679867	60680067	+	699.0	f1_balb.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	77756.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	-0.190283983883644	-0.433512878573243	-0.437149973405175	-0.439946418236497	-0.18409175617518	-0.432691077824907	-0.436349000259406	0.171796401643619	1.83723587345526	0.478276486866423	1
Merged-chr9-106199231-4	chr9	106199105	106199305	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026447)	promoter-TSS (NM_026447)	28.0	NM_026447	67905.0	Mm.23018	NM_026447	ENSMUSG00000020253	Ppm1m	2810423O19Rik|AW610647|C77250|PP2Ceta	protein phosphatase 1M	protein-coding	4.87600747618413	3.54934787055143	4.82071082990366	4.53442227130953	4.85277273352147	3.79044276671852	4.77318658611112	4.31345358810844	-0.0539596439204427	0.901138398730468	0.998431161219273
Merged-chr7-116328038-4	chr7	116327934	116328134	+	967.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER63D|DNA|hAT-Blackjack	6156.0	NM_026533	68052.0	Mm.14798	NM_026533	ENSMUSG00000090862	Rps13	2700063M04Rik	ribosomal protein S13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-149569749-2	chr2	149569649	149569849	+	768.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	164500.0	NM_021405	58214.0	Mm.117117	NM_021405	ENSMUSG00000033156	Cst10	DD72	cystatin 10 (chondrocytes)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-14239722-4	chr19	14239606	14239806	+	811.758301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	196244.0	NR_152176	667433.0	Mm.128913	NR_152176		Gm8630	EG667433	predicted gene 8630	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-88390409-6	chr10	88390307	88390507	+	899.0972289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004164, intron 1 of 20)	intron (NM_001004164, intron 1 of 20)	10995.0	NM_001004164	432486.0	Mm.335190	NM_001004164	ENSMUSG00000035311	Gnptab	EG432486|mKIAA1208	N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166410142-2	chr2	166410042	166410242	+	884.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-37309.0	NR_015558	319684.0	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28346042-2	chr7	28345942	28346142	+	831.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-4647.0	NM_013647	20055.0	Mm.702	NM_013647	ENSMUSG00000037563	Rps16	AA420385|AI317031	ribosomal protein S16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-94582704-4	chr3	94582604	94582804	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029721)	promoter-TSS (NM_029721)	12.0	NM_001082484	76742.0	Mm.28160	NM_029721	ENSMUSG00000028136	Snx27	5730552M22Rik|ESTM45|ESTM47|R75405	sorting nexin family member 27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99500401-3	chr15	99500308	99500508	+	746.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038658, intron 11 of 11)	intron (NM_001038658, intron 11 of 11)	-25678.0	NM_029236	75284.0	Mm.32826	NM_029236	ENSMUSG00000037525	Bcdin3d	4930556P03Rik|AV138748	BCDIN3 domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-76552542-4	chr12	76552443	76552643	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153804, intron 1 of 18)	intron (NM_153804, intron 1 of 18)	-4618.0	NR_046044	100504549.0	Mm.440349	NR_046044	ENSMUSG00000112388	AI463170	-	expressed sequence AI463170	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106463234-4	chr11	106463131	106463331	+	802.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023913, intron 1 of 21)	RSINE1|SINE|B4	24565.0	NM_023913	78943.0	Mm.340943	NM_023913	ENSMUSG00000020715	Ern1	9030414B18Rik|AI225830|C85377|Ire1a|Ire1alpha|Ire1p	endoplasmic reticulum (ER) to nucleus signalling 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-51850420-4	chr13	51850289	51850489	+	820.071411	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3714.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-83726354-2	chr2	83726254	83726454	+	843.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008402, intron 1 of 29)	intron (NM_008402, intron 1 of 29)	1957.0	NM_008402	16410.0	Mm.227	NM_008402	ENSMUSG00000027087	Itgav	1110004F14Rik|2610028E01Rik|CD51|D430040G12Rik	integrin alpha V	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117455444-2	chr8	117455344	117455544	+	750.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028941, intron 18 of 20)	intron (NM_028941, intron 18 of 20)	2421.0	NR_106045	102466801.0		NR_106045	ENSMUSG00000099062	Mir7077	Gm27774|mmu-mir-7077	microRNA 7077	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-129994930-4	chr7	129994846	129995046	+	997.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2B2|LINE|L1	32781.0	NR_046077	100043150.0	Mm.334264	NR_046077	ENSMUSG00000108504	Gm4265	-	predicted gene 4265	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-121592173-1	chr9	121592073	121592273	+	615.0	f1_balb.idr	intron (NR_040740, intron 1 of 3)	intron (NR_040740, intron 1 of 3)	5153.0	NR_040740	75384.0	Mm.445955	NR_040740	ENSMUSG00000084995	Lyzl4os	4930589B17Rik|4930596M17Rik	lysozyme-like 4, opposite strand	ncRNA	-0.517679634216932	-0.765941175779148	-0.768904035346691	-0.611996692232837	-0.774389354667778	-0.277866454730523	-0.768251538767357	-0.770784618639553	0.461740536072313	0.869319567945335	1
Merged-chr10-121585320-3	chr10	121585235	121585435	+	873.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019786, intron 1 of 20)	intron (NM_019786, intron 1 of 20)	1459.0	NM_019786	56480.0	Mm.34580	NM_019786	ENSMUSG00000020115	Tbk1	1200008B05Rik|AI462036|AW048562	TANK-binding kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-154958222-2	chr4	154958122	154958322	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2701.0	NM_010419	15208.0	Mm.137268	NM_010419	ENSMUSG00000048001	Hes5	bHLHb38	hes family bHLH transcription factor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-75605910-2	chr2	75605810	75606010	+	658.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53349.0	NM_146130	229279.0	Mm.316306	NM_053263	ENSMUSG00000059005	Hnrnpa3	2410013L13Rik|2610209F03Rik|2610510D13Rik|Hnrpa3	heterogeneous nuclear ribonucleoprotein A3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36258733-2	chr1	36258645	36258845	+	827.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-14443.0	NM_198899	320011.0	Mm.261022	NM_198899	ENSMUSG00000037470	Uggt1	0910001L17Rik|A930007H10Rik|AA589501|AI414429|AI448372|C820010P03Rik|GT|UGT1|Ugcgl1	UDP-glucose glycoprotein glucosyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-163643573-3	chr2	163643471	163643671	+	925.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012032, intron 1 of 9)	PB1D7|SINE|Alu	-1279.0	NR_028113	68386.0	Mm.410649	NR_028113	ENSMUSG00000058812	0610039K10Rik	-	RIKEN cDNA 0610039K10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-10818557-2	chr16	10818457	10818657	+	640.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16502.0	NM_001162932	223970.0	Mm.325777	NM_001033278	ENSMUSG00000037991	Rmi2	A630055G03Rik|Gm537|Gm929	RecQ mediated genome instability 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-27204725-2	chr3	27204625	27204825	+	632.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 1 of 4)	intron (NM_178772, intron 1 of 4)	21721.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-21946667-4	chr19	21946575	21946775	+	997.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	168335.0	NM_031997	83921.0	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	5.49335575510629	5.31337165896246	5.59360093266825	6.2320686861249	4.07555262222783	3.87290346129952	5.04617373842003	4.50885248772962	-1.47583380881274	3.85094328867853e-05	0.00140864687736479
Merged-chr11-51857307-4	chr11	51857229	51857429	+	909.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001357588, exon 1 of 13)	exon (NM_001357588, exon 1 of 13)	152.0	NM_199299	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-16434784-4	chr5	16434691	16434891	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RodERV21-int|LTR|ERV1	-118704.0	NM_001289460	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-21054949-1	chr10	21054849	21055049	+	557.0	f0_balb.idr	intron (NM_001177776, intron 2 of 6)	intron (NM_001177776, intron 2 of 6)	14129.0	NM_001177776	52906.0	Mm.253280	NM_026203	ENSMUSG00000019986	Ahi1	1700015F03Rik|Ahi-1|D10Bwg0629e	Abelson helper integration site 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-92531383-2	chr5	92531283	92531483	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25726.0	NM_007644	12492.0	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-11065401-4	chr19	11065314	11065514	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1C|Other|Other	-14848.0	NR_102366	107350.0	Mm.6381	NM_001177351	ENSMUSG00000075010	AW112010	-	expressed sequence AW112010	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-77448213-2	chr14	77448114	77448314	+	937.25	f0_c57.idr|f1_c57bl6.idr	intron (NM_001253759, intron 5 of 19)	intron (NM_001253759, intron 5 of 19)	58654.0	NR_033141	629678.0	Mm.390721	NM_001037935	ENSMUSG00000067973	Gm6994	EG629678	predicted gene 6994	ncRNA	3.90858911479493	4.03754182715603	4.96313222314152	4.4434242300073	1.33427127002312	1.59111392398372	2.68006354144304	2.41233702318259	-3.69129191617054	9.76424331565475e-08	8.87510540160801e-06
Merged-chr19-45658849-3	chr19	45658762	45658962	+	931.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013907, intron 1 of 8)	intron (NM_013907, intron 1 of 8)	1331.0	NM_013907	30838.0	Mm.254739	NM_013907	ENSMUSG00000040913	Fbxw4	Dac|Fbw4|SHFM3|SHSF3|dactylin|dactylyn	F-box and WD-40 domain protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-10981796-4	chr15	10981686	10981886	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008537)	promoter-TSS (NM_008537)	30.0	NM_008537	17117.0	Mm.2787	NM_008537	ENSMUSG00000022244	Amacr	Macr1	alpha-methylacyl-CoA racemase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-30815863-2	chr5	30815763	30815963	+	845.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133350, intron 1 of 6)	intron (NM_133350, intron 1 of 6)	1222.0	NM_133350	100732.0	Mm.332295	NM_133350	ENSMUSG00000029166	Mapre3	AI790651|EB2|EB3|EBF3|RP3	microtubule-associated protein, RP/EB family, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-73233666-2	chr16	73233566	73233766	+	583.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	570517.0	NM_019413	19876.0	Mm.310772	NM_019413	ENSMUSG00000022883	Robo1	AW494633|AW742721|DUTT1|Gm310	roundabout guidance receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-73531740-4	chr7	73531621	73531821	+	957.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081345, intron 2 of 38)	B4A|SINE|B4	10025.0	NM_001081345	244059.0	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-5109474-2	chr11	5109374	5109574	+	577.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_080595, intron 14 of 14)	intron (NM_080595, intron 14 of 14)	9309.0	NM_001290493	279766.0	Mm.260866	NM_177370	ENSMUSG00000034175	Rhbdd3	Ptag	rhomboid domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71333760-2	chr8	71333660	71333860	+	677.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_001142323, exon 13 of 39)	exon (NM_001142323, exon 13 of 39)	-33088.0	NM_001145780	67023.0	Mm.41890	NM_025917	ENSMUSG00000002395	Use1	2010315L10Rik|5730403H22Rik|AV002165|D12|Ed2|Q-snare|p31	unconventional SNARE in the ER 1 homolog (S. cerevisiae)	protein-coding	-0.792619126855503	-0.780879559195557	-0.784708133444348	-0.787673613228584	-0.630555236571406	-0.779328268661242	-0.78386225510462	0.0788124512707684	3.39455540743524	0.230770849759901	1
Merged-chr16-90044270-4	chr16	90044168	90044368	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69569.0	NM_001145886	21844.0	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-42261444-2	chr18	42261344	42261544	+	711.8000490000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_134137, intron 1 of 31)	intron (NM_134137, intron 1 of 31)	627.0	NM_134137	107045.0	Mm.312170	NM_134137	ENSMUSG00000024493	Lars	2310045K21Rik|3110009L02Rik|AW536573|mKIAA1352	leucyl-tRNA synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-105823664-4	chr12	105823565	105823765	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001347440, exon 16 of 21)	exon (NM_001347440, exon 16 of 21)	38968.0	NM_001347440	18789.0	Mm.255877	NM_011112	ENSMUSG00000021111	Papola	Pap|PapIII|Plap	poly (A) polymerase alpha	protein-coding	3.36191438360935	1.77967684118836	3.47259337151302	2.50259239183494	2.7737419806455	1.49941500497373	2.7169938667197	2.38959095095461	-0.966908424854817	0.255175957412108	0.753346736474035
Merged-chr6-113195287-2	chr6	113195187	113195387	+	700.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177763)	promoter-TSS (NM_177763)	97.0	NM_177763	269788.0	Mm.37943	NM_177763	ENSMUSG00000042873	Lhfpl4	1190004M23Rik|AI604880|B230384L07|mKIAA4027	lipoma HMGIC fusion partner-like protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127588515-2	chr10	127588415	127588615	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008512, exon 14 of 89)	exon (NM_008512, exon 14 of 89)	32633.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-68407435-4	chr11	68407367	68407567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20641.0	NM_008744	18208.0	Mm.39095	NM_008744	ENSMUSG00000020902	Ntn1	AI561871|BC019633|Netrin-1	netrin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150673046-3	chr4	150672929	150673129	+	982.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20855.0	NM_173774	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111909895-2	chr12	111909795	111909995	+	719.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1840.0	NM_011625	21981.0	Mm.313076	NM_011625	ENSMUSG00000021285	Ppp1r13b	AI449786|ASPP1|AW545810|Tp53bp2|Trp53bp2|p85	protein phosphatase 1, regulatory (inhibitor) subunit 13B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-86669416-4	chr6	86669303	86669503	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010751)	promoter-TSS (NM_010751)	-244.0	NM_010751	17119.0	Mm.279580	NM_010751	ENSMUSG00000001156	Mxd1	AW122478|Mad|Mad1	MAX dimerization protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-73382936-4	chr14	73382814	73383014	+	988.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008410, intron 1 of 5)	intron (NM_008410, intron 1 of 5)	2375.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-4660596-2	chr11	4660496	4660696	+	556.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029291, intron 8 of 19)	intron (NM_029291, intron 8 of 19)	22803.0	NM_029291	75452.0	Mm.439906	NM_029291	ENSMUSG00000020412	Ascc2	1700011I11Rik|2610034L15Rik|AI482016|ASC1p100|AW046480	activating signal cointegrator 1 complex subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-109687502-4	chr8	109687425	109687625	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155034, intron 1 of 10)	MLTR31A_MM|LTR|ERVK	5769.0	NR_155034	71955.0	Mm.290036	NM_028018	ENSMUSG00000031729	Ist1	2400003C14Rik|AW536298|mKIAA0174	increased sodium tolerance 1 homolog (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-102220047-2	chr11	102219947	102220147	+	585.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001284248, intron 3 of 28)	intron (NM_001284248, intron 3 of 28)	10103.0	NR_106179	102465892.0		NR_106179	ENSMUSG00000098863	Mir8101	Gm27705|mmu-mir-8101	microRNA 8101	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94304542-4	chr10	94304449	94304649	+	932.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5846.0	NR_033209	215472.0	Mm.255656	NM_174999	ENSMUSG00000053420	Gm4792	E130012K09|EG215472	predicted gene 4792	ncRNA	0.90037611292613	0.506113041050165	0.496003588511082	0.831121071829341	0.64464274470468	0.909316590177007	0.701802463013968	1.60421545279837	1.65546722585243	0.288320360082693	0.793815200967874
Merged-chr10-78482082-4	chr10	78481983	78482183	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-17135.0	NM_172134	216134.0	Mm.206159	NM_172134	ENSMUSG00000032788	Pdxk	2310036D04Rik|AA119688|C77999	pyridoxal (pyridoxine, vitamin B6) kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191599435-4	chr1	191599330	191599530	+	997.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178632, intron 7 of 19)	intron (NM_178632, intron 7 of 19)	23794.0	NM_001306204	77065.0	Mm.338175	NM_178632	ENSMUSG00000037461	Ints7	5930412E23Rik|int7	integrator complex subunit 7	protein-coding	1.21638549130737	0.791495674724429	1.33246329284868	1.41795696593876	2.09965377772102	0.794944450488805	0.779433326231844	1.42652845270705	0.725497640653115	0.608730089990939	0.974576632476413
Merged-chr12-85393689-3	chr12	85393585	85393785	+	896.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18968.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-102694809-2	chr13	102694709	102694909	+	715.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360519, intron 1 of 2)	MLT1B|LTR|ERVL-MaLR	1251.0	NM_008533	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191331630-2	chr1	191331530	191331730	+	631.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025864, intron 2 of 7)	PB1D10|SINE|Alu	5665.0	NM_025864	66950.0	Mm.236300	NM_025864	ENSMUSG00000026627	Tmem206	2310028N02Rik|AI118576	transmembrane protein 206	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-138304106-1	chr4	138304006	138304206	+	704.0	f1_c57bl6.idr	promoter-TSS (NM_007838)	promoter-TSS (NM_007838)	-632.0	NM_007838	13200.0	Mm.7236	NM_007838	ENSMUSG00000028757	Ddost	-	dolichyl-di-phosphooligosaccharide-protein glycotransferase	protein-coding	3.26833810780117	4.31836133235955	3.2229313436873	3.63828073731531	2.43981583768094	3.15846856743327	1.59306989544838	2.71526366850425	-1.81544272541409	0.00806448306910755	0.0934732723787708
Merged-chr10-81190280-4	chr10	81190180	81190380	+	886.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007828, exon 2 of 8)	exon (NM_007828, exon 2 of 8)	-4411.0	NR_015477	69678.0	Mm.81562	NR_015477		Atcayos	2310050B05Rik	ataxia, cerebellar, Cayman type, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-75211606-1	chr1	75211506	75211706	+	550.0	f1_c57bl6.idr	promoter-TSS (NM_029010)	promoter-TSS (NM_029010)	777.0	NM_011494	20872.0	Mm.1155	NM_011494	ENSMUSG00000026201	Stk16	EDPK|Krct|MPSK|PKL12|TSF-1	serine/threonine kinase 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-93549327-3	chr10	93549252	93549452	+	784.805542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175488, intron 3 of 15)	intron (NM_175488, intron 3 of 15)	-5529.0	NM_001359749	237465.0	Mm.477086	NM_175488	ENSMUSG00000036168	Ccdc38	4933417K05Rik	coiled-coil domain containing 38	protein-coding	2.59305381920702	2.24590329645545	1.83307435146727	2.23931679168196	2.9445732156786	2.09916907458041	2.99039475270664	1.33484573282129	0.559396924765909	0.543618422824519	0.955585568541497
Merged-chr12-80230200-4	chr12	80230119	80230319	+	829.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134156, intron 1 of 20)	intron (NM_134156, intron 1 of 20)	30152.0	NM_134156	109711.0	Mm.253564	NM_134156	ENSMUSG00000015143	Actn1	3110023F10Rik|Actn1a	actinin, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123378632-2	chr5	123378532	123378732	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16166.0	NM_133917	208104.0	Mm.83277	NM_133917	ENSMUSG00000038342	Mlxip	AW228700|Mir|bHLHe36	MLX interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-129625654-1	chr6	129625554	129625754	+	672.0	f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-1790.0	NM_001286018	27007.0	Mm.8217	NM_033078	ENSMUSG00000030149	Klrk1	D6H12S2489E|NKG2-D|Nkg2d	killer cell lectin-like receptor subfamily K, member 1	protein-coding	3.50001036153379	3.128139498121	2.90817852677724	3.43416912891837	2.30462109437468	3.67724782842144	3.75166627992682	1.56198044530427	-0.226186683335025	0.762910701530472	0.998431161219273
Merged-chr19-29500547-4	chr19	29500449	29500649	+	970.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21438.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111543058-2	chr12	111542958	111543158	+	603.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178041, intron 9 of 11)	intron (NM_178041, intron 9 of 11)	2112.0	NR_033168	100316932.0	Mm.484709	NR_033168	ENSMUSG00000064493	Snora28	MBI-13	small nucleolar RNA, H/ACA box 28	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-67952277-2	chr7	67952177	67952377	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010513)	promoter-TSS (NM_010513)	20.0	NM_010513	16001.0	Mm.275742	NM_010513	ENSMUSG00000005533	Igf1r	A330103N21Rik|CD221|D930020L01|IGF-1R|hyft	insulin-like growth factor I receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127322908-5	chr10	127322824	127323024	+	774.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359656)	promoter-TSS (NM_001359656)	-783.0	NM_146011	216445.0	Mm.227198	NM_146011	ENSMUSG00000040345	Arhgap9	AU043488	Rho GTPase activating protein 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-32895834-1	chr19	32895734	32895934	+	727.5	f0_balb.idr	Intergenic	MTD|LTR|ERVL-MaLR	138257.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	-0.465675464086724	-0.450607334808046	0.457850746978385	-0.459318588266081	-0.464726628300695	-0.0541084798796632	-0.454428782753994	-0.458652538472125	-1.73558213935489	0.517898972238145	1
Merged-chr6-89045821-3	chr6	89045694	89045894	+	951.2666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50316.0	NR_134978	232217.0	Mm.281744	NM_175017	ENSMUSG00000055403	4933427D06Rik	-	RIKEN cDNA 4933427D06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-118763239-1	chr13	118763139	118763339	+	592.5	f0_balb.idr	intron (NM_008002, intron 1 of 2)	intron (NM_008002, intron 1 of 2)	48540.0	NM_008002	14165.0	Mm.317323	NM_008002	ENSMUSG00000021732	Fgf10	AEY17|BB213776|Fgf-10|Gsfaey17	fibroblast growth factor 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19005478-3	chr7	19005376	19005576	+	863.8333130000001	f1_balb.idr|f1_c57bl6.idr	exon (NM_178757, exon 1 of 1)	exon (NM_178757, exon 1 of 1)	1411.0	NM_178757	272359.0	Mm.274237	NM_178757	ENSMUSG00000044030	Irf2bp1	6330414O09Rik|C530033F24	interferon regulatory factor 2 binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-26721834-2	chr16	26721734	26721934	+	608.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_105063, intron 2 of 2)	Lx5|LINE|L1	33668.0	NR_105063	100504628.0	Mm.393275	NR_105063	ENSMUSG00000092545	Gm20319	-	predicted gene, 20319	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-102847780-1	chr13	102847680	102847880	+	736.0	f0_balb.idr	intron (NM_175171, intron 5 of 28)	intron (NM_175171, intron 5 of 28)	87525.0	NR_130171	76624.0	Mm.426384	NR_130171	ENSMUSG00000091906	1700099I09Rik	-	RIKEN cDNA 1700099I09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-65787139-4	chr15	65787055	65787255	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001356582, exon 1 of 23)	5' UTR (NM_001356582, exon 1 of 23)	135.0	NM_001356582	76740.0	Mm.260647	NM_133766	ENSMUSG00000015002	Efr3a	A130089M23Rik|BB071175|C76891|C920006C10Rik|D030063F01Rik|mKIAA0143	EFR3 homolog A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-51101627-2	chr14	51101526	51101726	+	575.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_007447, exon 2 of 2)	exon (NM_007447, exon 2 of 2)	5626.0	NM_201239	58809.0	Mm.202665	NM_021472	ENSMUSG00000021876	Rnase4	C730049F20Rik|Rab1	ribonuclease, RNase A family 4	protein-coding	0.0479118211448818	0.0669602150192655	0.39990598728526	0.0559314190640938	0.725748451225599	0.0683586398886532	0.0621163546858044	0.807138208249644	2.36062757792767	0.285925275709811	1
Merged-chr15-66883830-3	chr15	66883748	66883948	+	751.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7545.0	NM_018865	22402.0	Mm.10222	NM_018865	ENSMUSG00000005124	Wisp1	AW146261|CCN4|Elm1	WNT1 inducible signaling pathway protein 1	protein-coding	2.65589701484874	1.4887255562926	1.94262897140171	2.36891983255488	2.7626985628601	3.53747811454615	3.08109597091683	2.50712660691437	1.63104287502034	0.0424491428005119	0.295078108528703
Merged-chr17-31112882-2	chr17	31112792	31112992	+	578.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009593, intron 13 of 14)	intron (NM_009593, intron 13 of 14)	16719.0	NM_011575	21786.0	Mm.4641	NM_011575	ENSMUSG00000024029	Tff3	ITF|mITF	trefoil factor 3, intestinal	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-30597307-6	chr16	30597183	30597383	+	985.111084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2440.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-25332482-4	chr17	25332365	25332565	+	984.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13097.0	NM_031187	100503895.0	Mm.3301	NM_031187	ENSMUSG00000024173	Tpsab1	MMCP-7|Mcp-7|Mcp7|Mcpt7	tryptase alpha/beta 1	protein-coding	5.82857355690204	5.14479865955988	3.90529505323278	5.40183692672981	4.66558550861216	5.32882790850927	4.90021167182672	5.86751113497555	0.0340019922648287	0.932900333904861	0.998431161219273
Merged-chr19-17350631-3	chr19	17350514	17350714	+	831.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010265, intron 1 of 2)	intron (NM_010265, intron 1 of 2)	6053.0	NM_173442	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	1.96463604017207	2.38145382849807	2.44132434997043	1.41721120785351	2.97862235801847	3.26004865981795	2.99401152059849	2.90157937455132	1.91906778491433	0.0144824972870534	0.141499187662921
Merged-chr15-73088946-2	chr15	73088846	73089046	+	735.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1466.0	NM_053068	93696.0	Mm.23095	NM_053068	ENSMUSG00000068391	Chrac1	2410152E03Rik|2810406L04Rik|YCL1	chromatin accessibility complex 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133686565-2	chr4	133686471	133686671	+	618.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080819, intron 15 of 19)	intron (NM_001080819, intron 15 of 19)	-13405.0	NM_001356466	230801.0	Mm.217004	NM_178698	ENSMUSG00000043257	Pigv	B330013B03|D430024F16Rik	phosphatidylinositol glycan anchor biosynthesis, class V	protein-coding	1.00391810769536	2.63770143141254	2.61978995299624	1.83495793431593	2.3461983667989	1.98414111367962	1.07850191733844	1.05142321481969	-1.03664821088922	0.387047047765168	0.876517644221684
Merged-chr7-27507075-4	chr7	27506977	27507177	+	898.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019412, intron 4 of 5)	intron (NM_019412, intron 4 of 5)	7753.0	NM_019412	19153.0	Mm.10119	NM_019412	ENSMUSG00000053198	Prx	L-Periaxin	periaxin	protein-coding	-1.08442814443595	-1.19668122519392	-1.20670852618424	-1.06055078801204	-1.08086552551595	-1.19450826723944	-1.20443856503221	-1.05804698911564	0.0367053573363311	0.990062574807593	1
Merged-chr10-43641357-4	chr10	43641273	43641473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47946.0	NR_033558	414125.0	Mm.244305	NR_033558	ENSMUSG00000075184	F830002L21Rik	F930017D23Rik	RIKEN cDNA F830002L21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-17306659-2	chr6	17306559	17306759	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001243064)	promoter-TSS (NM_001243064)	324.0	NM_007616	12389.0	Mm.28278	NM_007616	ENSMUSG00000007655	Cav1	Cav|Cav-1	caveolin 1, caveolae protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-55527824-3	chr13	55527678	55527878	+	755.950012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013739, intron 1 of 4)	intron (NM_013739, intron 1 of 4)	760.0	NM_013739	27261.0	Mm.33910	NM_013739	ENSMUSG00000035711	Dok3	AI450713|Dokl	docking protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-71184599-2	chr12	71184499	71184699	+	704.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_029818, exon 21 of 28)	exon (NM_029818, exon 21 of 28)	47751.0	NM_001163378	76967.0	Mm.87290	NM_029818	ENSMUSG00000034601	2700049A03Rik	Ta3|Talpid3|mKIAA0586	RIKEN cDNA 2700049A03 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-4833615-2	chr11	4833515	4833715	+	553.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252253)	promoter-TSS (NM_001252253)	-480.0	NM_001252253	18016.0	Mm.297109	NM_010898	ENSMUSG00000009073	Nf2	merlin	neurofibromin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-94571065-2	chr11	94570966	94571166	+	584.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153807, intron 6 of 15)	intron (NM_153807, intron 6 of 15)	6019.0	NM_007689	12643.0	Mm.440523	NM_007689	ENSMUSG00000039084	Chad	SLRR4A	chondroadherin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-132176979-1	chr3	132176879	132177079	+	868.3333130000001	f0_balb.idr	intron (NM_020265, intron 3 of 3)	intron (NM_020265, intron 3 of 3)	91687.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-108043159-3	chr13	108043043	108043243	+	857.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1331.0	NM_001048250	75616.0	Mm.491164	NM_001048250	ENSMUSG00000071180	Smim15	2810008M24Rik	small integral membrane protein 15	protein-coding	-0.0750758301788512	-0.207771089016902	-0.212776678371246	-0.216644638087489	0.272843647263373	-0.206643923851063	0.581138825105824	-0.215968525186101	3.03179272418758	0.198898933557427	1
Merged-chr16-88478231-4	chr16	88478119	88478319	+	679.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28759.0	NM_181490	239931.0	Mm.126860	NM_181490	ENSMUSG00000055811	Cldn17	-	claudin 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-43645353-2	chr7	43645253	43645453	+	998.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028236, intron 4 of 5)	MTD|LTR|ERVL-MaLR	10614.0	NM_028236	72431.0	Mm.158821	NM_028236	ENSMUSG00000030472	Ceacam18	2010110O04Rik	carcinoembryonic antigen-related cell adhesion molecule 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-123924842-4	chr9	123924740	123924940	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	43852.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127746573-3	chr10	127746523	127746723	+	762.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_198035, exon 2 of 2)	3' UTR (NM_198035, exon 2 of 2)	5175.0	NM_007412	11536.0	Mm.2857	NM_007412	ENSMUSG00000058396	Gpr182	AM-R|Admr|G10-D|Gpcr17|Gpcr22|MB10|NOW	G protein-coupled receptor 182	protein-coding	-0.0744440853245521	-0.0577707553424153	0.617695904835911	0.242980858469663	-0.0734006000498773	-0.0565428250169933	0.526378339488822	-0.0667002478506176	-0.735939670307939	0.747499850243027	1
Merged-chr7-128237282-4	chr7	128237176	128237376	+	990.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146205)	promoter-TSS (NM_146205)	-81.0	NM_146205	233912.0	Mm.475117	NM_146205	ENSMUSG00000042178	Armc5	AW049683|BC032200	armadillo repeat containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-21056406-3	chr2	21056307	21056507	+	693.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	87533.0	NR_033225	433408.0	Mm.386941	NR_033225		Gm13375	-	predicted gene 13375	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-100598089-2	chr5	100597989	100598189	+	770.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25884.0	NM_139198	231507.0	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-149728238-2	chr4	149728138	149728338	+	844.1666869999999	f1_balb.idr|f1_c57bl6.idr	exon (NM_177672, exon 5 of 6)	exon (NM_177672, exon 5 of 6)	9532.0	NM_001284273	230917.0	Mm.266704	NM_177672	ENSMUSG00000044700	Tmem201	AV028368|D4Ertd429e|Net5|Samp1	transmembrane protein 201	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117395284-2	chr11	117395184	117395384	+	554.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19105.0	NR_132097	105827746.0	Mm.388009	NR_132097	ENSMUSG00000086588	Gm11729	-	predicted gene 11729	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-99195256-4	chr9	99195142	99195342	+	668.591675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	41997.0	NM_001244762	623459.0	Mm.260891	NM_001244762	ENSMUSG00000096316	Faiml	EG623459|Gm6432	Fas apoptotic inhibitory molecule like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118806089-2	chr9	118806009	118806209	+	758.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 3 of 13)	L2a|LINE|L2	94417.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	2.52587235174946	3.91908503133408	3.34681079640041	2.5412767334933	3.11148721656348	3.31588515755122	1.59438711842205	3.26974952678046	-0.391312386655951	0.603810697398306	0.973589491466885
Merged-chr13-10856444-1	chr13	10856344	10856544	+	889.0	f1_balb.idr	Intergenic	Intergenic	-495641.0	NM_033269	12671.0	Mm.342315	NM_033269	ENSMUSG00000046159	Chrm3	Chrm-3|M3|M3R	cholinergic receptor, muscarinic 3, cardiac	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71535917-3	chr8	71535921	71536121	+	799.550293	f1_balb.idr|f1_c57bl6.idr	intron (NM_198095, intron 2 of 4)	intron (NM_198095, intron 2 of 4)	1416.0	NM_198095	69550.0	Mm.260325	NM_198095	ENSMUSG00000046718	Bst2	2310015I10Rik|Bst-2|C87040|CD317|DAMP-1|GREG	bone marrow stromal cell antigen 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-8312741-2	chr17	8312562	8312762	+	667.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_134114, intron 1 of 7)	intron (NM_134114, intron 1 of 7)	-1544.0	NR_073374	75060.0	Mm.426530	NR_073374	ENSMUSG00000087478	4930506C21Rik	-	RIKEN cDNA 4930506C21 gene	ncRNA	0.311301744229722	0.33220695435687	0.325365174214075	0.853977573837392	0.696921897771724	0.333748377135882	0.905267780641913	0.861027838900902	1.47680785874176	0.434958204363689	1
Merged-chr16-33785505-4	chr16	33785394	33785594	+	928.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8543.0	NM_010739	17063.0	Mm.3177	NM_010739	ENSMUSG00000022824	Muc13	114/A10|14/A10|AI159736|Lrrp|Ly64|NJ-1	mucin 13, epithelial transmembrane	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-76361160-2	chr16	76361060	76361260	+	720.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173440, intron 1 of 3)	B1_Mus2|SINE|Alu	11889.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-64398277-4	chr13	64398187	64398387	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27767.0	NM_009984	13039.0	Mm.930	NM_009984	ENSMUSG00000021477	Ctsl	1190035F06Rik|CatL|Ctsl1|MEP|fs|nkt	cathepsin L	protein-coding	2.91764497368461	3.27124099348018	2.47476709175454	3.49887470469534	3.6125366732375	2.41019445165068	2.99794285141837	2.25372835156289	-0.251864453103756	0.721561000368681	0.998431161219273
Merged-chr14-122876363-4	chr14	122876257	122876457	+	760.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153443, intron 22 of 24)	intron (NR_153443, intron 22 of 24)	-36673.0	NR_155287	105245866.0	Mm.390754	NM_001039531	ENSMUSG00000075463	Gm15735	4930594M22Rik|F930011C10Rik	predicted gene 15735	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-59194848-3	chr2	59194715	59194915	+	819.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 1 of 20)	intron (NM_175464, intron 1 of 20)	33965.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-117358053-4	chr2	117357960	117358160	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15183.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-9157652-2	chr8	9157552	9157752	+	841.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12983.0	NR_073360	74688.0	Mm.159298	NR_073360	ENSMUSG00000109215	4930453L07Rik	-	RIKEN cDNA 4930453L07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-60791696-2	chr19	60791596	60791796	+	936.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur3|SINE|Alu	-1003.0	NM_010123	13669.0	Mm.2238	NM_010123	ENSMUSG00000024991	Eif3a	A830012B05Rik|Csma|Eif3|Eif3s10|mKIAA0139	eukaryotic translation initiation factor 3, subunit A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-160667491-4	chr2	160667378	160667578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009408, intron 2 of 20)	MLT1F|LTR|ERVL-MaLR	21581.0	NM_009408	21969.0	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-13038833-4	chr7	13038743	13038943	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001168469)	promoter-TSS (NM_001168469)	-568.0	NM_001168469	22192.0	Mm.196580	NM_145578	ENSMUSG00000005575	Ube2m	2510040H03Rik|UBC12|Ubc-rs2	ubiquitin-conjugating enzyme E2M	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-46737683-3	chr13	46737621	46737821	+	776.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9872.0	NM_175749	218210.0	Mm.255398	NM_175749	ENSMUSG00000021374	Nup153	B130015D15Rik|C88147	nucleoporin 153	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-48848637-2	chr11	48848537	48848737	+	619.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347446, intron 6 of 6)	intron (NM_001347446, intron 6 of 6)	11166.0	NM_001347446	94089.0	Mm.390335	NM_053166	ENSMUSG00000040350	Trim7	AI790312	tripartite motif-containing 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-117478220-4	chr12	117478188	117478388	+	810.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M5|LINE|L1	-38191.0	NM_175930	217944.0	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-61645499-1	chr7	61645399	61645599	+	551.0	f1_c57bl6.idr	Intergenic	Intergenic	-30172.0	NR_045727	319752.0	Mm.294476	NR_045727		B230209E15Rik	-	RIKEN cDNA B230209E15 gene	ncRNA	-1.32440223303897	-1.29339468673833	-0.717877708899544	-1.31276353204239	-1.32392690786997	-1.29109028300231	-1.30162128075409	-1.31119997543009	-2.49510383040271	0.470258445164311	1
Merged-chr17-56139958-3	chr17	56139847	56140047	+	884.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001130456, intron 1 of 16)	CpG	396.0	NM_001130456	20359.0	Mm.8029	NM_013662	ENSMUSG00000001227	Sema6b	Sema|Seman|VIb|semaZ	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-140881822-4	chr7	140881694	140881894	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177804)	promoter-TSS (NM_001177804)	75.0	NM_001127351	64384.0	Mm.29760	NM_022433	ENSMUSG00000025486	Sirt3	2310003L23Rik|AI848213|Sir2l3	sirtuin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-151973043-3	chr2	151972952	151973152	+	869.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146127, intron 1 of 1)	intron (NM_146127, intron 1 of 1)	342.0	NM_001289151	73847.0	Mm.272444	NM_028666	ENSMUSG00000027459	Fam110a	1700008J10Rik|5430432M24Rik|AI747080	family with sequence similarity 110, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-66490158-2	chr17	66490058	66490258	+	690.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29512.0	NM_024448	19328.0	Mm.248313	NM_024448	ENSMUSG00000023460	Rab12	2900054P15Rik|AW555448|C77700	RAB12, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-121409450-2	chr10	121409350	121409550	+	821.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_138956)	TTS (NM_138956)	44360.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	-1.26472950133113	-1.51255384623736	-1.37364594462016	-1.52972510195091	-1.54153971950802	-1.5105109001971	-1.51984705072522	-1.52833894650432	-1.8392127899658	0.598030108707587	1
Merged-chr12-80644244-4	chr12	80644122	80644322	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347409)	promoter-TSS (NM_001347409)	7.0	NM_026244	328133.0	Mm.238279	NM_026244	ENSMUSG00000048833	Slc39a9	2010002A02Rik|2610511I23Rik|4833420E20Rik|AW209151	solute carrier family 39 (zinc transporter), member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-8750992-2	chr19	8750892	8751092	+	630.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019829, intron 9 of 9)	intron (NM_019829, intron 9 of 9)	5977.0	NR_132423	102640359.0	Mm.440831	NR_132423		1700023D09Rik	AV208457	RIKEN cDNA 1700023D09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4282494-2	chr19	4282394	4282594	+	894.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026720, intron 1 of 14)	intron (NM_026720, intron 1 of 14)	643.0	NM_026720	68423.0	Mm.23642	NM_026720	ENSMUSG00000005986	Ankrd13d	0710001P18Rik|AI430801	ankyrin repeat domain 13 family, member D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-70979757-4	chr17	70979636	70979836	+	805.825012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023402, intron 1 of 3)	B4A|SINE|B4	10780.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-45731427-3	chr17	45731323	45731523	+	786.188904	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	2421.0	NM_028164	72240.0	Mm.482897	NM_028164	ENSMUSG00000094690	1600014C23Rik	-	RIKEN cDNA 1600014C23 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-12225841-4	chr12	12225735	12225935	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36304.0	NM_029758	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	5.1403416632535	5.3986918348966	4.65967520314094	5.29220605099275	4.43984070741263	4.50966131284918	4.95917515540973	5.31511754393242	-0.351780250262581	0.30979836843396	0.810619545900841
Merged-chr14-7996391-2	chr14	7996291	7996491	+	861.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-2209.0	NM_007870	13421.0	Mm.272258	NM_007870	ENSMUSG00000025279	Dnase1l3	DNasegamma|Dhp2|Lsd	deoxyribonuclease 1-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-87285096-2	chr17	87284996	87285196	+	920.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_028639, intron 1 of 19)	intron (NM_028639, intron 1 of 19)	2210.0	NM_028639	225049.0	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-73889764-4	chr12	73889678	73889878	+	889.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11546.0	NM_001313920	15251.0	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19627820-2	chr7	19627720	19627920	+	966.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009046, intron 2 of 10)	RMER17C|LTR|ERVK	1618.0	NM_001290457	19698.0	Mm.1741	NM_009046	ENSMUSG00000002983	Relb	shep	avian reticuloendotheliosis viral (v-rel) oncogene related B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-85174536-1	chr16	85174436	85174636	+	579.0	f1_balb.idr	promoter-TSS (NM_001198824)	promoter-TSS (NM_001198824)	-829.0	NM_001198826	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	-1.8418762459921	-1.8125357239735	-1.82140854000656	-1.82869693527674	-1.56059678980999	-1.8106129477253	-1.81939992894326	-1.82739231600805	1.3620893379502	0.699511506488145	1
Merged-chr2-34609689-4	chr2	34609601	34609801	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290625, intron 10 of 11)	intron (NM_001290625, intron 10 of 11)	145531.0	NM_001356441	66691.0	Mm.156452	NM_025709	ENSMUSG00000026867	Gapvd1	2010005B09Rik|4432404J10Rik|AW108497|Gapex-5|RAP6|RME-6|mKIAA1521	GTPase activating protein and VPS9 domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-90117881-3	chr3	90117782	90117982	+	726.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029937, intron 3 of 39)	RSINE1|SINE|B4	13750.0	NM_029937	77595.0	Mm.159949	NM_029937	ENSMUSG00000027939	Nup210l	4930548O11Rik|R26-EGFP|Tg(Gt(ROSA)26Sor-EGFP)130910Eps	nucleoporin 210-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-134196015-2	chr1	134195915	134196115	+	876.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357515, intron 3 of 10)	intron (NM_001357515, intron 3 of 10)	2567.0	NM_016749	53311.0	Mm.379067	NM_016749	ENSMUSG00000042451	Mybph	AI385643|MyBP-H	myosin binding protein H	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-22784384-2	chr2	22784284	22784484	+	666.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_019456, intron 1 of 13)	intron (NM_019456, intron 1 of 13)	10057.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-58272326-3	chr9	58272155	58272355	+	840.857117	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	19091.0	NM_026942	69106.0	Mm.216502	NM_026942	ENSMUSG00000032333	Stoml1	1810015E19Rik|AI847431|SLP1|STORP|UNC24|WPB72	stomatin-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-131160987-2	chr2	131160887	131161087	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026091)	promoter-TSS (NM_026091)	-906.0	NM_026091	67326.0	Mm.27711	NM_026091	ENSMUSG00000027327	1700037H04Rik	-	RIKEN cDNA 1700037H04 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-113660636-4	chr6	113660556	113660756	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 2 of 11)	ORR1D2|LTR|ERVL-MaLR	22189.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152518867-2	chr1	152518767	152518967	+	582.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001346119, exon 18 of 18)	3' UTR (NM_001346119, exon 18 of 18)	106350.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-45020091-2	chr19	45019991	45020191	+	718.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001130526, intron 1 of 4)	intron (NM_001130526, intron 1 of 4)	1956.0	NM_001130526	226154.0	Mm.28204	NM_145503	ENSMUSG00000035342	Lzts2	BC014695|LAPSER1|mKIAA1813	leucine zipper, putative tumor suppressor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-30008189-2	chr16	30008089	30008289	+	760.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033631)	promoter-TSS (NR_033631)	-478.0	NR_033631	100043102.0	Mm.30797	NR_033631	ENSMUSG00000097184	4632428C04Rik	Gm4231	RIKEN cDNA 4632428C04 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-16877704-4	chr12	16877602	16877802	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17276.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-155028882-4	chr1	155028779	155028979	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54385.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-41575964-2	chr5	41575864	41576064	+	615.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	131727.0	NM_001310592	100972.0	Mm.41555	NM_027295	ENSMUSG00000029128	Rab28	2700023P08Rik|AW496496	RAB28, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46303300-2	chr19	46303200	46303400	+	886.833374	f1_balb.idr|f1_c57bl6.idr	TTS (NR_152247)	TTS (NR_152247)	-1437.0	NM_001177369	18034.0	Mm.102365	NM_019408	ENSMUSG00000025225	Nfkb2	NF-kappaB2|lyt|p49|p49/p100|p50B|p52	nuclear factor of kappa light polypeptide gene enhancer in B cells 2, p49/p100	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75552350-2	chr11	75552250	75552450	+	700.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_039553)	TTS (NR_039553)	921.0	NR_039553	100628624.0		NR_039553	ENSMUSG00000093100	Mir3971	mmu-mir-3971|mu-mir-3971	microRNA 3971	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-62501126-4	chr10	62501025	62501225	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358965, intron 2 of 3)	intron (NM_001358965, intron 2 of 3)	6632.0	NM_011157	19073.0	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-13984987-2	chr10	13984887	13985087	+	695.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358782, intron 1 of 9)	intron (NM_001358782, intron 1 of 9)	18608.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	1.14905176843258	0.742074492113109	0.938343589176539	1.72154596787393	1.1596418334156	0.745046189871268	0.944997728235021	1.73247872586927	0.0329033276949588	0.981416968349634	0.998431161219273
Merged-chr7-31114200-2	chr7	31114100	31114300	+	614.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110252, intron 2 of 13)	intron (NM_001110252, intron 2 of 13)	1126.0	NM_008281	15451.0	Mm.19182	NM_008281	ENSMUSG00000001249	Hpn	Hlb320	hepsin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-148491681-1	chr4	148491581	148491781	+	771.0	f1_c57bl6.idr	exon (NM_020009, exon 28 of 58)	exon (NM_020009, exon 28 of 58)	8781.0	NM_001039554	654812.0	Mm.388929	NM_001039554	ENSMUSG00000028989	Angptl7	-	angiopoietin-like 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-41068305-4	chr13	41068198	41068398	+	786.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145802, intron 2 of 11)	MLT1B|LTR|ERVL-MaLR	2167.0	NM_008547	17152.0	Mm.8149	NM_008547	ENSMUSG00000021363	Mak	A930010O05Rik	male germ cell-associated kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-69374607-3	chr12	69374511	69374711	+	922.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007481, exon 2 of 2)	3' UTR (NM_007481, exon 2 of 2)	2461.0	NM_007481	11845.0	Mm.27308	NM_007481	ENSMUSG00000044147	Arf6	AI788669|AW496366	ADP-ribosylation factor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-114778563-2	chr5	114778452	114778652	+	901.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026718, intron 1 of 14)	intron (NM_026718, intron 1 of 14)	3412.0	NM_026718	68420.0	Mm.275554	NM_026718	ENSMUSG00000041870	Ankrd13a	1100001D10Rik|ANKRD13|AU046136	ankyrin repeat domain 13a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-79838313-3	chr12	79838148	79838348	+	834.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	86485.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19877044-6	chr7	19876978	19877178	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177036, exon 7 of 7)	3' UTR (NM_177036, exon 7 of 7)	10887.0	NM_177036	319930.0	Mm.215839	NM_177036	ENSMUSG00000049848	Ceacam19	C130022P09Rik|CEAL1	carcinoembryonic antigen-related cell adhesion molecule 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-40789432-2	chr1	40789332	40789532	+	799.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172499, intron 1 of 5)	intron (NM_172499, intron 1 of 5)	1225.0	NM_172499	211798.0	Mm.235443	NM_172499	ENSMUSG00000041945	Mfsd9	4931419K03Rik	major facilitator superfamily domain containing 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-102031242-2	chr7	102031142	102031342	+	744.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029211, intron 5 of 8)	intron (NM_029211, intron 5 of 8)	-13087.0	NM_010531	16068.0	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	1.62736155198848	1.62219089145566	1.42585862585156	1.62554086672665	0.834803179061317	0.887535178984572	1.98897957160412	0.856225181529029	-1.02915578053935	0.452609297274654	0.91869698872066
Merged-chr17-43578738-1	chr17	43578638	43578838	+	655.0	f0_balb.idr	intron (NM_013737, intron 1 of 11)	intron (NM_013737, intron 1 of 11)	10287.0	NM_013737	27226.0	Mm.9277	NM_013737	ENSMUSG00000023913	Pla2g7	PAF-AH|R75400	phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-68446535-2	chr10	68446435	68446635	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028491, intron 5 of 7)	intron (NM_028491, intron 5 of 7)	95340.0	NM_028491	73287.0	Mm.141830	NM_028491	ENSMUSG00000019945	Cabcoco1	1700040L02Rik	ciliary associated calcium binding coiled-coil 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-142842297-2	chr5	142842197	142842397	+	598.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24910.0	NM_001122730	231861.0	Mm.354649	NM_178242	ENSMUSG00000039477	Tnrc18	BC025631|EG381742|Zfp469	trinucleotide repeat containing 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-23665818-2	chr17	23665755	23665955	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_153784, exon 4 of 10)	exon (NM_153784, exon 4 of 10)	5349.0	NM_153784	212733.0	Mm.59997	NM_153784	ENSMUSG00000043782	Bicdl2	BICDR-2|Ccdc64b	BICD family like cargo adaptor 2	protein-coding	-0.939689859171677	-0.920375438977221	-0.931299611472457	0.0547743973239929	-0.938904031919501	-0.917255548672094	-0.930407580667812	-0.933885285392914	-3.35597997027105	0.279004136702824	1
Merged-chr16-11652841-4	chr16	11652758	11652958	+	918.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028964, intron 16 of 20)	intron (NM_028964, intron 16 of 20)	-126844.0	NR_126430	73761.0	Mm.39183	NR_126430		4833415N18Rik	-	RIKEN cDNA 4833415N18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-147957222-4	chr5	147957121	147957321	+	974.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029920)	promoter-TSS (NM_029920)	-99.0	NM_001359503	77521.0	Mm.244177	NM_029920	ENSMUSG00000029651	Mtus2	5730592G18Rik|A730013O20Rik|AU067634|C130038G02Rik|Cazip|Gm763|mKIAA0774	microtubule associated tumor suppressor candidate 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-110646035-2	chr7	110645935	110646135	+	726.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18378.0	NM_009627	11535.0	Mm.1408	NM_009627	ENSMUSG00000030790	Adm	AM	adrenomedullin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-66347556-4	chr9	66347460	66347660	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2890.0	NM_145617	235439.0	Mm.244179	NM_145617	ENSMUSG00000038664	Herc1	2810449H11Rik|B230218H07|D130015N03Rik|tbl	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-6625999-8	chr15	6625838	6626038	+	945.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155272, intron 3 of 6)	intron (NR_155272, intron 3 of 6)	28365.0	NR_155272	102632231.0	Mm.444780	NR_155272		LOC102632231	-	uncharacterized LOC102632231	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-104505898-3	chr7	104505812	104506012	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199146, intron 1 of 7)	Lx4A|LINE|L1	1937.0	NM_199146	209387.0	Mm.277377	NM_199146	ENSMUSG00000057596	Trim30d	AI451617|TRIM30-3|Trim79	tripartite motif-containing 30D	protein-coding	3.05663815587725	4.4275185408468	2.1875442057032	2.86649875054654	6.2949356825798	6.46351972310682	6.56824033057347	6.44335573123053	3.6442681212538	1.21736436543864e-08	1.39547175062416e-06
Merged-chr5-140116186-4	chr5	140116078	140116278	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359025, intron 14 of 17)	intron (NM_001359025, intron 14 of 17)	58740.0	NM_001359027	17120.0	Mm.27250	NM_010752	ENSMUSG00000029554	Mad1l1	AI173502|AW550425|Mad1	MAD1 mitotic arrest deficient 1-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-76644293-3	chr2	76644194	76644394	+	804.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011871, intron 2 of 7)	intron (NM_011871, intron 2 of 7)	3700.0	NM_011871	23992.0	Mm.277250	NM_011871	ENSMUSG00000002731	Prkra	AV120107|PRK|Pact|RAX|lear	protein kinase, interferon inducible double stranded RNA dependent activator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41317884-3	chr19	41317803	41318003	+	744.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 8 of 16)	intron (NM_031376, intron 8 of 16)	-53899.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	2.17261013585971	2.37936468250924	2.61621026755344	0.979539444316238	0.945421481688306	1.0374187164853	1.27847845933138	2.2293078992019	-1.71137600572477	0.166253443393798	0.631812823040522
Merged-chr17-83642918-2	chr17	83642818	83643018	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2B|LTR|ERVL	-11023.0	NM_153512	225030.0	Mm.223506	NM_153512	ENSMUSG00000045053	Kcng3	KV6.3|Kv10.1a|Kv10.1b	potassium voltage-gated channel, subfamily G, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-4618121-4	chr6	4618022	4618222	+	950.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145398, intron 5 of 17)	intron (NM_145398, intron 5 of 17)	17056.0	NM_145398	213819.0	Mm.270703	NM_145398	ENSMUSG00000015189	Casd1	Cas1|Cast1|SOAT	CAS1 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-56295198-2	chr19	56295098	56295298	+	898.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_146101, intron 1 of 11)	intron (NM_146101, intron 1 of 11)	7286.0	NM_146101	226243.0	Mm.25791	NM_146101	ENSMUSG00000025075	Habp2	AI035669|FSAP|HABP|HGFAL|PHBP	hyaluronic acid binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-125551673-2	chr7	125551573	125551773	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001008700)	promoter-TSS (NM_001008700)	-609.0	NM_001008700	16190.0	Mm.233802	NM_010557	ENSMUSG00000030748	Il4ra	CD124|Il4r	interleukin 4 receptor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6363646-4	chr19	6363515	6363715	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011750)	promoter-TSS (NM_011750)	-75.0	NM_011750	22668.0	Mm.256422	NM_011750	ENSMUSG00000024949	Sf1	BBP|MZFM|WBP4|Zfp162	splicing factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-92089360-2	chr16	92089260	92089460	+	548.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_080456, intron 1 of 2)	intron (NM_080456, intron 1 of 2)	31024.0	NM_080456	121022.0	Mm.217354	NM_080456	ENSMUSG00000039680	Mrps6	AW046321	mitochondrial ribosomal protein S6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152089175-2	chr1	152089075	152089275	+	687.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_197990, intron 1 of 5)	intron (NM_197990, intron 1 of 5)	1145.0	NM_197990	69399.0	Mm.278031	NM_197990	ENSMUSG00000032666	1700025G04Rik	2610510E02Rik|2900042O04Rik	RIKEN cDNA 1700025G04 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99365270-2	chr7	99365170	99365370	+	787.1999509999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12031.0	NM_001111044	12406.0	Mm.22708	NM_009825	ENSMUSG00000070436	Serpinh1	BERF-1|Cbp1|Cbp2|Hsp47|J6|Serpinh2|gp46	serine (or cysteine) peptidase inhibitor, clade H, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-51267207-1	chr16	51267107	51267307	+	632.0	f1_balb.idr	Intergenic	L1_Mus4|LINE|L1	483798.0	NR_131005	78639.0	Mm.160109	NR_131005	ENSMUSG00000092276	1700116B05Rik	-	RIKEN cDNA 1700116B05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-101721948-4	chr4	101721849	101722049	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146146, intron 1 of 18)	L2a|LINE|L2	4542.0	NM_010704	16847.0	Mm.259282	NM_010704	ENSMUSG00000057722	Lepr	LEPROT|Leprb|Modb1|OB-RGRP|Obr|db|diabetes|obese-like|obl	leptin receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165861236-1	chr2	165861136	165861336	+	868.0	f1_balb.idr	intron (NM_001252587, intron 2 of 11)	intron (NM_001252587, intron 2 of 11)	-3063.0	NM_001252585	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-4736906-3	chr17	4736808	4737008	+	896.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	101928.0	NR_130984	75117.0	Mm.429393	NR_130984		4930517M08Rik	-	RIKEN cDNA 4930517M08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101618516-4	chr7	101618436	101618636	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-37375.0	NM_019915	11872.0	Mm.57008	NM_019915	ENSMUSG00000030651	Art2b	ART2.2|ARTC2|Art|Ly92b|Rt-6|Rt6|Rt6-2	ADP-ribosyltransferase 2b	protein-coding	3.90367817259983	2.9604682788676	3.7398600719814	3.76992934354103	3.88580429185712	3.1226279957252	3.69522933398094	3.58528502980166	-0.0616400707877324	0.907183770906041	0.998431161219273
Merged-chr11-88823183-2	chr11	88823122	88823322	+	690.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28281.0	NM_009648	11640.0	Mm.2969	NM_009648	ENSMUSG00000018428	Akap1	AKAP121|AKAP84|Akap|C76494|C81186|DAKAP1|S-AKAP84	A kinase (PRKA) anchor protein 1	protein-coding	2.64760460465151	1.06612349609922	1.84667645152549	1.01480978610397	2.67113777257004	1.07236449003086	1.99952166977682	1.64935410688223	0.331559112758914	0.787453271166713	0.998431161219273
Merged-chr14-55682398-2	chr14	55682298	55682498	+	577.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145705)	promoter-TSS (NM_145705)	-581.0	NM_145705	28113.0	Mm.29346	NM_145705	ENSMUSG00000007589	Tinf2	AW552114|D14Wsu146e|Tin2	Terf1 (TRF1)-interacting nuclear factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31154328-2	chr14	31154228	31154428	+	610.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_138672, intron 25 of 68)	intron (NM_138672, intron 25 of 68)	14313.0	NM_138672	192187.0	Mm.220821	NM_138672	ENSMUSG00000042286	Stab1	FEEL-1|FELE-1|MFEEL-1|MS-1|STAB-1|mKIAA0246	stabilin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99672911-1	chr15	99672811	99673011	+	702.0	f1_c57bl6.idr	exon (NM_009597, exon 3 of 12)	exon (NM_009597, exon 3 of 12)	2534.0	NM_009597	11419.0	Mm.440107	NM_009597	ENSMUSG00000023017	Asic1	AI843610|ASIC|ASIC1a|Accn2|B530003N02Rik|BNaC2	acid-sensing (proton-gated) ion channel 1	protein-coding	0.953585660470099	0.696931069149271	1.17077093008843	1.52477361849724	0.96128404164325	0.699246263578225	1.18128883806418	1.14007719849867	-0.546658016752701	0.703452007451282	0.998431161219273
Merged-chr2-156202506-1	chr2	156202406	156202606	+	560.0	f1_balb.idr	intron (NM_172674, intron 1 of 17)	intron (NM_172674, intron 1 of 17)	5859.0	NM_172674	228829.0	Mm.427078	NM_172674	ENSMUSG00000038116	Phf20	6820402O20Rik	PHD finger protein 20	protein-coding	-1.52696403314699	-1.49523967873556	-1.5048333853602	-1.51271394162622	-1.52473704212565	-1.49316068248889	-1.50266158046844	-1.06847079017215	2.01069003169785	0.564432837776867	1
Merged-chr9-122248301-2	chr9	122248201	122248401	+	736.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271873, intron 11 of 12)	intron (NM_001271873, intron 11 of 12)	25727.0	NR_106185	102465896.0		NR_106185	ENSMUSG00000098922	Mir8106	Gm27594|mmu-mir-8106	microRNA 8106	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-3510429-2	chr8	3510329	3510529	+	577.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_053177, intron 8 of 13)	intron (NM_053177, intron 8 of 13)	-4955.0	NM_001359122	50767.0	Mm.23085	NM_015801	ENSMUSG00000004565	Pnpla6	AI661849|MSws|Nte	patatin-like phospholipase domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-14361013-4	chr16	14360920	14361120	+	834.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008576)	promoter-TSS (NM_008576)	-538.0	NM_008576	17250.0	Mm.196634	NM_008576	ENSMUSG00000023088	Abcc1	Abcc1a|Abcc1b|MRP|Mdrap|Mrp1	ATP-binding cassette, sub-family C (CFTR/MRP), member 1	protein-coding	2.88585948509674	3.24566169119392	3.1356313425457	3.84463860181266	2.91071435616293	3.98519022360275	3.26176416752672	3.33820527438678	0.155097014199579	0.793804997993808	0.998431161219273
Merged-chr8-68277158-3	chr8	68277096	68277296	+	739.291687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028182, intron 1 of 8)	intron (NM_028182, intron 1 of 8)	668.0	NM_028182	72281.0	Mm.40974	NM_028182	ENSMUSG00000053886	Sh2d4a	2210402M20Rik|SH2A	SH2 domain containing 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10979361-4	chr19	10979302	10979502	+	923.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034898, intron 6 of 6)	intron (NM_001034898, intron 6 of 6)	-4732.0	NM_023529	69826.0	Mm.273404	NM_023529	ENSMUSG00000024731	Ms4a10	2010001N17Rik	membrane-spanning 4-domains, subfamily A, member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-144258040-2	chr5	144257900	144258100	+	999.900024	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163709, intron 2 of 2)	intron (NM_001163709, intron 2 of 2)	2775.0	NM_018772	55950.0	Mm.38011	NM_018772	ENSMUSG00000047843	Bri3	I3	brain protein I3	protein-coding	-0.055017842387035	-0.179019901351466	-0.183422767173667	-0.186811175831481	0.0701837544969496	-0.178025696404009	0.477325573662583	0.110493545565768	2.9113074204318	0.191625607490995	1
Merged-chr9-123846280-2	chr9	123846180	123846380	+	678.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_148925, intron 1 of 18)	MTC|LTR|ERVL-MaLR	5381.0	NM_148925	17281.0	Mm.252941	NM_148925	ENSMUSG00000025241	Fyco1	2810409M01Rik|Mem2|RUFY3|ZFYVE7	FYVE and coiled-coil domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-33844181-1	chr17	33844081	33844281	+	896.0	f1_balb.idr	intron (NM_001305169, intron 1 of 4)	PB1D10|SINE|Alu	755.0	NM_001305169	54219.0	Mm.11175	NM_019421	ENSMUSG00000002308	Cd320	425O18-1|8D6|D17Ertd716e|NG29|TCblR|VLDL	CD320 antigen	protein-coding	1.32444470642638	1.19902712205585	2.19793285250716	2.70382931176678	1.33386149059273	2.1742683844428	2.21621330270885	2.14404294137216	-0.0348837273643941	0.974050441105304	0.998431161219273
Merged-chr10-68720580-2	chr10	68720480	68720680	+	562.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3166.0	NM_177794	327766.0	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-94180169-4	chr8	94180087	94180287	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013602, exon 3 of 3)	exon (NM_013602, exon 3 of 3)	1098.0	NM_013602	17748.0	Mm.192991	NM_013602	ENSMUSG00000031765	Mt1	MT-I|Mt-1	metallothionein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-125279640-2	chr5	125279540	125279740	+	585.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205082, intron 11 of 11)	intron (NM_001205082, intron 11 of 11)	61454.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-145277068-4	chr6	145276971	145277171	+	960.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26519.0	NR_045598	100039495.0	Mm.121014	NR_045598	ENSMUSG00000086013	Gm15706	-	predicted gene 15706	ncRNA	2.61670704499523	2.04258558833875	3.1299025873768	2.66038034938453	3.40688127884254	3.80160724488684	1.45609079750563	2.11119625498875	0.618427081993613	0.468456147853938	0.924409990887115
Merged-chr3-9128584-3	chr3	9128466	9128666	+	952.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	66602.0	NR_040597	75149.0	Mm.399324	NR_040597	ENSMUSG00000103116	4930539M17Rik	-	RIKEN cDNA 4930539M17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-8639276-2	chr15	8639176	8639376	+	641.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_148938, intron 8 of 9)	intron (NM_148938, intron 8 of 9)	71531.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-83032774-1	chr15	83032674	83032874	+	663.0	f1_balb.idr	intron (NM_001271411, intron 1 of 5)	intron (NM_001271411, intron 1 of 5)	623.0	NM_001271412	74039.0	Mm.32584	NM_028728	ENSMUSG00000058099	Nfam1	4921501M20Rik|Cnaip	Nfat activating molecule with ITAM motif 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-101689821-3	chr4	101689724	101689924	+	714.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27583.0	NM_001122899	16847.0	Mm.259282	NM_010704	ENSMUSG00000057722	Lepr	LEPROT|Leprb|Modb1|OB-RGRP|Obr|db|diabetes|obese-like|obl	leptin receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-120464935-3	chr2	120464822	120465022	+	936.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040608, intron 1 of 4)	ID4_|SINE|ID	1329.0	NM_007601	12335.0	Mm.458021	NM_007601	ENSMUSG00000079110	Capn3	AI323605|Capa-3|Capa3|Lp82|p94	calpain 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-71125349-2	chr6	71125249	71125449	+	980.4166869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19031.0	NM_001033929	232078.0	Mm.37547	NM_178413	ENSMUSG00000054474	Thnsl2	BC051244|TSH2	threonine synthase-like 2 (bacterial)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-54555027-2	chr11	54554927	54555127	+	772.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252494, intron 4 of 28)	intron (NM_001252494, intron 4 of 28)	32182.0	NM_001252496	192786.0	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-88094587-4	chr1	88094396	88094596	+	998.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_201642)	promoter-TSS (NM_201642)	-505.0	NM_201642	394432.0	Mm.300095	NM_201642	ENSMUSG00000090124	Ugt1a7c	A10'|A13|Ugt1a10	UDP glucuronosyltransferase 1 family, polypeptide A7C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120720629-3	chr8	120720547	120720747	+	765.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15711.0	NM_008320	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117576249-2	chr8	117576149	117576349	+	589.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172285, intron 9 of 32)	intron (NM_172285, intron 9 of 32)	77974.0	NM_172285	234779.0	Mm.192699	NM_172285	ENSMUSG00000034330	Plcg2	PLC-gamma-2|PLCgamma2|Plcg-2	phospholipase C, gamma 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-121708048-2	chr9	121707948	121708148	+	865.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2341.0	NM_026794	26901.0	Mm.24848	NM_026794	ENSMUSG00000032526	Ss18l2	1110020I04Rik|AI463209|Deb1	SS18, nBAF chromatin remodeling complex subunit like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21073550-4	chr9	21073449	21073649	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039824)	promoter-TSS (NM_001039824)	-35.0	NM_001039824	68165.0	Mm.490294	NM_001039824	ENSMUSG00000079677	Fdx1l	B230118G17Rik|Fdx2	ferredoxin 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-94373023-1	chr8	94372923	94373123	+	708.0	f0_balb.idr	Intergenic	RLTR33|LTR|ERVK	-13406.0	NM_001357205	64209.0	Mm.29151	NM_022331	ENSMUSG00000031770	Herpud1	Herp|Mifl|SUP	homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-137719501-2	chr5	137719401	137719601	+	705.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20301.0	NM_175521	243300.0	Mm.74750	NM_175521	ENSMUSG00000045348	Nyap1	6430598A04Rik	neuronal tyrosine-phosphorylated phosphoinositide 3-kinase adaptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-58455019-2	chr13	58454919	58455119	+	740.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51676.0	NM_001301341	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-125859117-4	chr2	125859021	125859221	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009939)	promoter-TSS (NM_009939)	12.0	NM_175154	69976.0	Mm.20216	NM_175154	ENSMUSG00000027207	Galk2	2810017M24Rik|AI327030|Gk2	galactokinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-116448921-2	chr4	116448821	116449021	+	990.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001042743, intron 1 of 29)	intron (NM_001042743, intron 1 of 29)	15260.0	NM_001042743	17776.0	Mm.9287	NM_008641	ENSMUSG00000003810	Mast2	MAST205|Mtssk	microtubule associated serine/threonine kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118676637-2	chr9	118676500	118676700	+	874.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 11 of 27)	intron (NM_133721, intron 11 of 27)	-35092.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	-0.892251419657023	-1.01191804162483	-1.0231062749645	-1.02661578645729	-1.0292768998096	-1.00949350478729	-0.84923468722631	-0.610110057387673	1.7421143064587	0.558515091875706	1
Merged-chr11-95414951-4	chr11	95414756	95414956	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359107, intron 1 of 9)	intron (NM_001359107, intron 1 of 9)	773.0	NM_001359107	20747.0	Mm.285454	NM_025287	ENSMUSG00000057522	Spop	AI315626|Pcif1|TEF2	speckle-type POZ protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-25830637-4	chr15	25830550	25830750	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12648.0	NM_001034851	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-101006443-3	chr3	101006320	101006520	+	622.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167906, intron 7 of 8)	MTEa|LTR|ERVL-MaLR	23075.0	NM_001167906	630146.0	Mm.190915	NM_001099332	ENSMUSG00000086564	Cd101	EWI-101|Gm1016|Gm734|Igsf2	CD101 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46330193-4	chr19	46330113	46330313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_133694, exon 4 of 4)	exon (NM_133694, exon 4 of 4)	2029.0	NM_133694	68431.0	Mm.19973	NM_133694	ENSMUSG00000025226	Fbxl15	0710008C12Rik|Fbxo37	F-box and leucine-rich repeat protein 15	protein-coding	-0.0820722532274279	-0.0555567680635322	0.745882566626792	-0.0707637898139752	-0.0803723997565657	-0.0536556970303327	1.13351794276921	-0.0695895652003423	0.894594251942337	0.695023720230288	1
Merged-chr12-17467007-3	chr12	17466916	17467116	+	907.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-77857.0	NM_013614	18263.0	Mm.34102	NM_013614	ENSMUSG00000011179	Odc1	ODC	ornithine decarboxylase, structural 1	protein-coding	2.94085139822702	3.55609922991207	3.10209179726748	2.19331392284588	4.9277160845618	3.5834803727458	4.28800861753392	4.58713074831304	2.02132866002839	0.000221824685020178	0.00585363468666882
Merged-chr15-6029447-4	chr15	6029322	6029522	+	968.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155428, intron 2 of 2)	intron (NR_155428, intron 2 of 2)	15282.0	NR_155428	105245876.0	Mm.128197	NR_155428		Gm41259	-	predicted gene, 41259	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-87908147-2	chr3	87908047	87908247	+	911.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001331051, intron 1 of 6)	intron (NM_001331051, intron 1 of 6)	1297.0	NM_001331052	15191.0	Mm.292208	NM_008231	ENSMUSG00000004897	Hdgf	AI118077|D3Ertd299e	hepatoma-derived growth factor	protein-coding	1.4462230183952	1.88520786497633	1.01372710485161	1.95769000355322	1.86671902386121	1.46854230231998	1.01775379453041	1.77253712620816	-0.179238689161376	0.88267681577474	0.998431161219273
Merged-chr5-52189954-5	chr5	52189856	52190056	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015537)	promoter-TSS (NR_015537)	590.0	NR_104311	13204.0	Mm.993	NM_007839	ENSMUSG00000029169	Dhx15	DBP1|DEAH9|Ddx15|HRH2|mDEAH9	DEAH (Asp-Glu-Ala-His) box polypeptide 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-58640519-2	chr13	58640419	58640619	+	560.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29642.0	NM_022317	114304.0	Mm.18188	NM_022317	ENSMUSG00000021553	Slc28a3	Cnt3	solute carrier family 28 (sodium-coupled nucleoside transporter), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-36645885-4	chr16	36645782	36645982	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019388, intron 1 of 7)	intron (NM_019388, intron 1 of 7)	20195.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129556613-4	chr4	129556508	129556708	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010693, intron 5 of 11)	intron (NM_010693, intron 5 of 11)	1203.0	NR_106199	102465997.0		NR_106199	ENSMUSG00000099070	Mir8119	Gm27567|mmu-mir-8119	microRNA 8119	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-120190324-3	chr6	120190192	120190392	+	634.049988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016718, intron 1 of 3)	intron (NM_016718, intron 1 of 3)	-3531.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135960944-3	chr4	135960857	135961057	+	934.361084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357530, intron 9 of 9)	intron (NM_001357530, intron 9 of 9)	-2768.0	NM_001356493	74246.0	Mm.247946	NM_178389	ENSMUSG00000028671	Gale	2310002A12Rik|AI323962	galactose-4-epimerase, UDP	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-83767679-2	chr8	83767573	83767773	+	803.916687	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-26362.0	NM_001163031	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	1.45002589796076	1.92389765472294	1.14014019380639	2.29566839334758	2.03076468766524	2.06823783181785	1.37831724346405	1.93386605261352	0.259336143442553	0.810950695877896	0.998431161219273
Merged-chr9-52289232-2	chr9	52289132	52289332	+	631.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-121121.0	NM_001162921	244871.0	Mm.295686	NM_001162921	ENSMUSG00000035164	Zc3h12c	A230108E06|C230027N18Rik|mKIAA1726	zinc finger CCCH type containing 12C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-35122374-2	chr7	35122274	35122474	+	916.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001287523)	TTS (NM_001287523)	3081.0	NM_007678	12606.0	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141267986-3	chr4	141267900	141268100	+	826.233337	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10439.0	NR_151527	100503810.0		NR_151527	ENSMUSG00000085395	Gm13056	-	predicted gene 13056	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99945127-2	chr15	99945027	99945227	+	987.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13469.0	NM_028180	72277.0	Mm.272766	NM_028180	ENSMUSG00000045350	1700030F18Rik	FAM186A	RIKEN cDNA 1700030F18 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-21985426-3	chr14	21985373	21985573	+	754.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_145459, exon 3 of 3)	exon (NM_145459, exon 3 of 3)	4128.0	NM_145459	218820.0	Mm.292401	NM_145459	ENSMUSG00000039081	Zfp503	AI181838|B830002A16Rik|Nolz-1|Nolz1|Znf503	zinc finger protein 503	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126605577-1	chr8	126605477	126605677	+	779.0	f1_balb.idr	Intergenic	Intergenic	-12141.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5474709-5	chr19	5474658	5474858	+	709.780945	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164352)	promoter-TSS (NM_001164352)	23.0	NM_001164352	58859.0	Mm.276367	NM_021474	ENSMUSG00000024909	Efemp2	0610011K11Rik|Fbln4|MBP1	epidermal growth factor-containing fibulin-like extracellular matrix protein 2	protein-coding	2.78244407605806	2.01060419678936	2.93384120709965	2.35268150581413	2.64949357861519	1.52021741446184	3.03654641622088	2.69201037445174	0.0364737161056654	0.965276568290241	0.998431161219273
Merged-chr12-83730397-1	chr12	83730297	83730497	+	543.5	f0_balb.idr	intron (NM_001362271, intron 9 of 11)	intron (NM_001362271, intron 9 of 11)	-33237.0	NM_001205343	170721.0	Mm.133443	NM_130887	ENSMUSG00000021223	Papln	E030033C16Rik	papilin, proteoglycan-like sulfated glycoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-78856470-3	chr11	78856389	78856589	+	892.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29894.0	NM_001076681	66274.0	Mm.258932	NM_001076681	ENSMUSG00000072640	Lyrm9	1810012P15Rik	LYR motif containing 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-3740384-4	chr10	3740289	3740489	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159942)	promoter-TSS (NM_001159942)	12.0	NM_001159942	213783.0	Mm.150831	NM_001033253	ENSMUSG00000040624	Plekhg1	D10Ertd733e|Gm521|mKIAA1209	pleckstrin homology domain containing, family G (with RhoGef domain) member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-118923053-1	chr2	118922953	118923153	+	620.0	f0_balb.idr	3' UTR (NM_001045523, exon 7 of 7)	3' UTR (NM_001045523, exon 7 of 7)	-3444.0	NM_028117	72136.0	Mm.486238	NM_028117	ENSMUSG00000074916	Chst14	2600016L03Rik|D4ST-1|D4st1	carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-159256946-2	chr3	159256846	159257046	+	654.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_040750, intron 4 of 4)	L1VL4|LINE|L1	180582.0	NR_040750	624759.0	Mm.491054	NR_040750	ENSMUSG00000106053	Gm20752	-	predicted gene, 20752	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115653117-4	chr5	115653003	115653203	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_151603, exon 1 of 3)	non-coding (NR_151603, exon 1 of 3)	483.0	NR_151601	75665.0	Mm.233914	NM_001080808	ENSMUSG00000041609	Bicdl1	2210403N09Rik|BICDR-1|Ccdc64	BICD family like cargo adaptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-25475484-2	chr14	25475384	25475584	+	830.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	16299.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-146445713-4	chr3	146445618	146445818	+	946.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	-4749.0	NM_028836	74245.0	Mm.45396	NM_028836	ENSMUSG00000028189	Ctbs	2210401K11Rik|CTB	chitobiase, di-N-acetyl-	protein-coding	2.94878949595755	2.1252137681705	2.56352738145972	1.49116235008902	3.57211513118545	3.24835131498488	3.51672880631651	3.042297117423	1.72459869949611	0.018306284092692	0.168693392122979
Merged-chr9-62341256-4	chr9	62341109	62341309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009672)	promoter-TSS (NM_009672)	-134.0	NM_009672	11737.0	Mm.269088	NM_009672	ENSMUSG00000032249	Anp32a	Anp32|I1PP2A|LANP|PHAP1|W91701|pp32	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-60603472-4	chr13	60603367	60603567	+	855.616699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	1256.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-119313181-4	chr12	119313073	119313273	+	940.383301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74897.0	NM_177290	320910.0	Mm.217000	NM_177290	ENSMUSG00000025321	Itgb8	4832412O06Rik	integrin beta 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-83731720-2	chr17	83731620	83731820	+	621.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_054082, intron 3 of 16)	MTD|LTR|ERVL-MaLR	25557.0	NM_001171052	116871.0	Mm.277668	NM_054082	ENSMUSG00000055817	Mta3	1110002J22Rik|mKIAA1266	metastasis associated 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-74997464-4	chr1	74997342	74997542	+	998.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029342, intron 2 of 4)	MTC|LTR|ERVL-MaLR	-45770.0	NM_010544	16147.0	Mm.439736	NM_010544	ENSMUSG00000006538	Ihh	HHG-2	Indian hedgehog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-44075810-2	chr17	44075710	44075910	+	583.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-2992.0	NM_001168620	83965.0	Mm.30145	NM_032003	ENSMUSG00000023960	Enpp5	AW061004|D17Abb1e|E-NPP 5	ectonucleotide pyrophosphatase/phosphodiesterase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180408064-2	chr1	180407964	180408164	+	836.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081175, intron 2 of 7)	intron (NM_001081175, intron 2 of 7)	75440.0	NM_001081227	381310.0	Mm.44791	NM_001081227	ENSMUSG00000053963	Stum	6330403A02Rik|Gm10001|R75555	mechanosensory transduction mediator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-71878184-3	chr6	71878055	71878255	+	859.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30607.0	NR_155285	69956.0	Mm.30256	NM_027275	ENSMUSG00000063884	Ptcd3	2610034F17Rik|2810422B04Rik|AA589622|AU045708|MRP-S39	pentatricopeptide repeat domain 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80715423-4	chr7	80715318	80715518	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016721, intron 37 of 37)	intron (NM_016721, intron 37 of 37)	-26541.0	NM_173863	70461.0	Mm.392175	NM_173863	ENSMUSG00000030527	Crtc3	2610312F20Rik|6332415K15Rik|AI429792|BC011210|TORC3	CREB regulated transcription coactivator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-36999762-4	chr16	36999637	36999837	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9270.0	NM_001358217	207215.0	Mm.211899	NM_001037321	ENSMUSG00000047746	Fbxo40	9830003A13Rik|mKIAA1195	F-box protein 40	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-125350526-3	chr10	125350448	125350648	+	708.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	-21585.0	NM_001358496	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99003126-2	chr15	99003026	99003226	+	652.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17B|LTR|ERVK	17161.0	NR_045991	75951.0	Mm.441657	NR_045991	ENSMUSG00000097587	4930578M01Rik	3010001K12Rik	RIKEN cDNA 4930578M01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-106321585-1	chr9	106321485	106321685	+	541.0	f1_c57bl6.idr	intron (NM_027354, intron 9 of 10)	intron (NM_027354, intron 9 of 10)	40524.0	NM_027354	70235.0	Mm.23054	NM_027354	ENSMUSG00000023345	Poc1a	2510040D07Rik|Wdr51a|cha	POC1 centriolar protein A	protein-coding	0.615487416018394	1.00506660653917	0.341579036598731	1.18814724528401	0.325961970499019	0.351728130074039	0.343412989284904	0.801123464222957	-2.13599858082042	0.251516161630371	1
Merged-chr7-4431685-2	chr7	4431585	4431785	+	620.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290409, intron 3 of 5)	B3|SINE|B2	13972.0	NM_175372	108841.0	Mm.413106	NM_175372	ENSMUSG00000008435	Rdh13	8430425D21Rik	retinol dehydrogenase 13 (all-trans and 9-cis)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141881888-1	chr4	141881788	141881988	+	671.0	f1_c57bl6.idr	Intergenic	Intergenic	-6968.0	NM_025994	27984.0	Mm.395598	NM_025994	ENSMUSG00000040659	Efhd2	2600015J22Rik|AA408606|D4Wsu27e	EF hand domain containing 2	protein-coding	-0.0906261269788674	0.278612519657248	-0.0801143246444955	0.447377856899123	-0.0896501504118681	-0.0738381095884212	-0.0789847257026974	0.551264612951049	-0.335274663860877	0.884821721840425	1
Merged-chr3-88254764-2	chr3	88254664	88254864	+	894.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021375)	promoter-TSS (NM_021375)	-80.0	NM_021375	58176.0	Mm.103777	NM_021375	ENSMUSG00000104445	Rhbg	-	Rhesus blood group-associated B glycoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-120398444-4	chr14	120398346	120398546	+	918.275024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360380, intron 7 of 7)	intron (NM_001360380, intron 7 of 7)	-80015.0	NM_029519	76108.0	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-37824856-2	chr13	37824756	37824956	+	694.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1182.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-70871018-4	chr2	70870920	70871120	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45540.0	NM_172664	228012.0	Mm.136511	NM_172664	ENSMUSG00000041997	Tlk1	4930545J15Rik	tousled-like kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-121416886-4	chr14	121416802	121417002	+	984.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37672.0	NM_145465	223255.0	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-8762398-4	chr11	8762299	8762499	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-97864.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-38940353-3	chr6	38940248	38940448	+	746.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 1 of 12)	intron (NM_011539, intron 1 of 12)	21362.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-75901600-4	chr18	75901502	75901702	+	990.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145356, intron 2 of 4)	intron (NM_145356, intron 2 of 4)	81424.0	NM_145356	207259.0	Mm.159332	NM_145356	ENSMUSG00000044646	Zbtb7c	B230208J24Rik|Kr-pok|Zbtb36	zinc finger and BTB domain containing 7C	protein-coding	5.77296312686345	4.73403162161952	6.06178631662489	6.10598259611047	3.91759176436516	4.76725982103962	3.47397024169883	3.7476616479463	-2.03765270151309	3.18443962756165e-07	2.43873872243519e-05
Merged-chr4-155892789-3	chr4	155892660	155892860	+	832.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033490)	promoter-TSS (NM_001033490)	885.0	NM_207223	140500.0	Mm.219591	NM_207223	ENSMUSG00000029033	Acap3	Centb5|Kiaa1716-hp|mKIAA1716	ArfGAP with coiled-coil, ankyrin repeat and PH domains 3	protein-coding	2.36760973452007	2.17864945014891	1.26780565172374	1.23795896163877	3.10159779595307	2.88046352685668	2.25939996647971	2.04941971979779	1.72309561969955	0.0769959660534081	0.421697017974189
Merged-chr9-21138101-1	chr9	21138001	21138201	+	542.0	f1_balb.idr	TTS (NM_016742)	TTS (NM_016742)	-6826.0	NM_001205312	54721.0	Mm.20249	NM_018793	ENSMUSG00000032175	Tyk2	JTK1	tyrosine kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-42944033-2	chr9	42943933	42944133	+	891.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_175481, intron 1 of 20)	CpG	338.0	NM_175481	110637.0	Mm.370291	NM_175481	ENSMUSG00000032017	Grik4	6330551K01Rik|GluK4|GluRgamma1|KA-1|KA1	glutamate receptor, ionotropic, kainate 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31830790-4	chr14	31830692	31830892	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024604)	promoter-TSS (NM_001024604)	-377.0	NM_001024604	105522.0	Mm.37660	NM_001024604	ENSMUSG00000014496	Ankrd28	AI465466|AI604979|E430019N21Rik|mKIAA0379	ankyrin repeat domain 28	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-150667190-5	chr2	150667101	150667301	+	628.866638	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040331)	promoter-TSS (NR_040331)	-293.0	NR_040331	109344.0	Mm.440012	NR_040331	ENSMUSG00000087406	E130215H24Rik	-	RIKEN cDNA E130215H24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-49245262-6	chr11	49245110	49245310	+	839.5277710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010794, exon 2 of 3)	5' UTR (NM_010794, exon 2 of 3)	1019.0	NM_001110148	17308.0	Mm.196933	NM_010794	ENSMUSG00000020346	Mgat1	Mgat-1	mannoside acetylglucosaminyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-59441145-2	chr2	59441045	59441245	+	907.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB7|LINE|L1	-43508.0	NM_029723	76747.0	Mm.275769	NM_029723	ENSMUSG00000026989	Dapl1	2310032F03Rik|EEDA	death associated protein-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-75707992-4	chr13	75707851	75708051	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138953, intron 1 of 11)	CpG	467.0	NM_138953	192657.0	Mm.21288	NM_138953	ENSMUSG00000001542	Ell2	-	elongation factor RNA polymerase II 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-25274605-2	chr8	25274505	25274705	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31665.0	NR_040352	74489.0	Mm.256468	NR_040352	ENSMUSG00000110140	5430421F17Rik	-	RIKEN cDNA 5430421F17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-51533805-2	chr10	51533697	51533897	+	607.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPEY5_LTR|LTR|ERVK	42899.0	NM_013532	14728.0	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-87142392-1	chr17	87142292	87142492	+	616.0	f1_balb.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	34713.0	NM_019654	56468.0	Mm.126885	NM_019654	ENSMUSG00000037104	Socs5	1810018L08Rik|Cish5|mKIAA0671	suppressor of cytokine signaling 5	protein-coding	1.05081700125852	1.15195196085392	1.69381031721474	1.74120491637582	0.875568160921497	1.88489766988845	1.30614865035937	1.4119522268696	-0.0909791063348347	0.942153731758631	0.998431161219273
Merged-chr1-53851094-4	chr1	53850997	53851197	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001883, intron 21 of 28)	intron (NM_001001883, intron 21 of 28)	1673.0	NR_106149	102465783.0		NR_106149	ENSMUSG00000098443	Mir7681	Gm27806|mmu-mir-7681	microRNA 7681	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132364913-2	chr4	132364813	132365013	+	583.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161797, intron 9 of 12)	intron (NM_001161797, intron 9 of 12)	-11227.0	NR_003270	399101.0	Mm.486919	NR_002904	ENSMUSG00000085241	Snhg3	Rnu17d|U17HG	small nucleolar RNA host gene 3	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-53693917-4	chr9	53693812	53694012	+	955.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175562, intron 1 of 1)	ORR1B1|LTR|ERVL-MaLR	12320.0	NM_175562	270160.0	Mm.290285	NM_175562	ENSMUSG00000055069	Rab39	C230094F14Rik|Rab39a	RAB39, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27671424-2	chr2	27671324	27671524	+	612.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5777.0	NM_011305	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-20811311-3	chr14	20811194	20811394	+	754.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17055.0	NR_153779	102631887.0	Mm.122292	NR_153779	ENSMUSG00000114241	Gm30108	-	predicted gene, 30108	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-121705307-4	chr11	121705177	121705377	+	767.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144797, intron 1 of 3)	intron (NM_144797, intron 1 of 3)	2850.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81024563-2	chr15	81024463	81024663	+	584.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001082536, intron 4 of 13)	intron (NM_001082536, intron 4 of 13)	46798.0	NM_134091	105835.0	Mm.274943	NM_134091	ENSMUSG00000042303	Sgsm3	1810012I01Rik|AI428557|BB175482|Cip85|R75178|RUSC3|Rutbc3	small G protein signaling modulator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-3540066-2	chr13	3539966	3540166	+	600.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008112, intron 1 of 10)	intron (NM_008112, intron 1 of 10)	1991.0	NM_008112	14569.0	Mm.153226	NM_008112	ENSMUSG00000021218	Gdi2	GDI-B|GDIB|Gdi3	guanosine diphosphate (GDP) dissociation inhibitor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-11065004-2	chr16	11064904	11065104	+	968.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1294.0	NM_009223	20621.0	Mm.325800	NM_009223	ENSMUSG00000037972	Snn	2810407J07Rik|AI848521|AW547286	stannin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-92416664-3	chr16	92416549	92416749	+	915.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081549, intron 1 of 3)	intron (NM_001081549, intron 1 of 3)	-16571.0	NM_019466	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-120510487-2	chr1	120510378	120510578	+	578.5	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-5454.0	NM_010766	17167.0	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-40704213-2	chr4	40704113	40704313	+	603.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1019.0	NM_001025445	66408.0	Mm.430710	NM_025545	ENSMUSG00000028411	Aptx	2410016G21Rik|AA388047|FHA-HIT	aprataxin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-90603415-4	chr1	90603329	90603529	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133805)	promoter-TSS (NM_133805)	4.0	NM_133805	108679.0	Mm.119177	NM_133805	ENSMUSG00000034432	Cops8	9430009J09Rik|AA408242|Csn8|Sgn8	COP9 signalosome subunit 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-94632110-4	chr16	94632009	94632209	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113389, intron 2 of 11)	intron (NM_001113389, intron 2 of 11)	20690.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-21776276-4	chr4	21776164	21776364	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290425)	promoter-TSS (NM_001290425)	-6.0	NM_001290425	77593.0	Mm.154306	NM_152825	ENSMUSG00000040455	Usp45	3110003C05Rik|4930550B20Rik|AI843191|Gcap7	ubiquitin specific petidase 45	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-51619623-4	chr11	51619538	51619738	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026631)	promoter-TSS (NM_026631)	-135.0	NM_026631	52530.0	Mm.28203	NM_026631	ENSMUSG00000001056	Nhp2	2410130M07Rik|D11Ertd175e|Nola2	NHP2 ribonucleoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-145212184-4	chr6	145212090	145212290	+	928.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163628, intron 1 of 2)	intron (NM_001163628, intron 1 of 2)	1043.0	NM_001362057	67636.0	Mm.486359	NM_133688	ENSMUSG00000040370	Etfrf1	4930469P12Rik|AL022899|Ghiso|Lyrm5	electron transfer flavoprotein regulatory factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-122746538-2	chr10	122746438	122746638	+	557.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110218, intron 1 of 9)	intron (NM_001110218, intron 1 of 9)	67223.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-60580945-4	chr3	60580851	60581051	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310514, intron 2 of 8)	intron (NM_001310514, intron 2 of 8)	79772.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	2.86875774028987	3.30468979810548	3.01068061668257	2.28738347547972	2.97728153412469	2.90768308798865	3.45557984911493	3.28287948503485	0.459728656454306	0.475078453645176	0.927029054433838
Merged-chr2-110207050-1	chr2	110206950	110207150	+	614.0	f1_c57bl6.idr	Intergenic	B4|SINE|B4	98675.0	NM_130452	170442.0	Mm.27335	NM_130452	ENSMUSG00000041660	Bbox1	AI874739	butyrobetaine (gamma), 2-oxoglutarate dioxygenase 1 (gamma-butyrobetaine hydroxylase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-98877542-2	chr10	98877442	98877642	+	757.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37100.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-78538148-4	chr9	78538094	78538294	+	994.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001276452, exon 11 of 11)	exon (NM_001276452, exon 11 of 11)	49851.0	NM_172773	235504.0	Mm.46932	NM_172773	ENSMUSG00000049624	Slc17a5	4631416G20Rik|4732491M05|AST|ISSD|NSD|SD|SIALIN|SIASD|SLD	solute carrier family 17 (anion/sugar transporter), member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-104001296-4	chr2	104001237	104001437	+	730.012512	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175161, intron 3 of 4)	intron (NM_175161, intron 3 of 4)	-26462.0	NM_020593	57443.0	Mm.143768	NM_020593	ENSMUSG00000027180	Fbxo3	1200002G09Rik|1700026K02Rik|AI046358|Fba	F-box protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-135579363-1	chr3	135579263	135579463	+	881.6666869999999	f0_balb.idr	Intergenic	Intergenic	93752.0	NM_027288	110173.0	Mm.280536	NM_027288	ENSMUSG00000028164	Manba	2410030O07Rik|B930014J03Rik|Bmn	mannosidase, beta A, lysosomal	protein-coding	1.1851148727263	0.886260316579342	1.09824509898755	1.65241673116829	1.46038779353972	0.890320812396489	1.59970607507543	2.30720559368254	1.43359747431635	0.262773980256394	0.764120750149349
Merged-chr2-181680220-4	chr2	181680107	181680307	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356342)	promoter-TSS (NM_001356342)	-90.0	NM_001356343	21400.0	Mm.24245	NM_009326	ENSMUSG00000059540	Tcea2	AI326274|S-II-T1|SII-T1|Tceat	transcription elongation factor A (SII), 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-142892779-1	chr5	142892679	142892879	+	923.0	f1_balb.idr	intron (NM_001033312, intron 1 of 4)	B1_Mus2|SINE|Alu	2459.0	NM_001033312	231863.0	Mm.89753	NM_001033312	ENSMUSG00000066640	Fbxl18	AI427077|B130019G13Rik|C330021B20Rik	F-box and leucine-rich repeat protein 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-75094906-4	chr9	75094822	75095022	+	992.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010864, intron 1 of 40)	intron (NM_010864, intron 1 of 40)	23716.0	NM_010864	17918.0	Mm.3645	NM_010864	ENSMUSG00000034593	Myo5a	9630007J19Rik|AI413174|AI661011|Dbv|MVa|Myo5|MyoVA|Sev-1|d|d-120J|flail|flr	myosin VA	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71315317-1	chr8	71315217	71315417	+	669.0	f1_balb.idr	intron (NM_001142322, intron 3 of 39)	intron (NM_001142322, intron 3 of 39)	42603.0	NM_001142323	17925.0	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	0.298180904923652	0.661975523785357	0.0422032241230253	0.0378513555774552	0.178648357407167	0.0491104798187266	0.0434468369171104	0.676529240270799	-0.131822537136353	0.949445783087281	1
Merged-chr12-86132930-2	chr12	86132830	86133030	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029601, intron 3 of 7)	intron (NM_029601, intron 3 of 7)	-36411.0	NR_046081	328136.0	Mm.312050	NR_046081	ENSMUSG00000097543	Gm805	-	predicted gene 805	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-81862553-4	chr7	81862450	81862650	+	987.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291282)	promoter-TSS (NM_001291282)	-137.0	NM_001291282	107769.0	Mm.221412	NM_145375	ENSMUSG00000038623	Tm6sf1	AI428514|BC023123|C630016D09Rik	transmembrane 6 superfamily member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-34202655-2	chr7	34202555	34202755	+	564.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_008155, exon 17 of 18)	exon (NM_008155, exon 17 of 18)	-5985.0	NM_001360710	68079.0	Mm.38173	NM_026549	ENSMUSG00000002635	Pdcd2l	6030457N17Rik	programmed cell death 2-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-61518145-3	chr11	61518043	61518243	+	791.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010148, exon 10 of 10)	3' UTR (NM_010148, exon 10 of 10)	12999.0	NM_001330781	27078.0	Mm.261226	NM_013717	ENSMUSG00000001039	B9d1	AW045994|B9|Eppb9	B9 protein domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-5047493-4	chr7	5047405	5047605	+	720.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-4027.0	NM_026900	68992.0	Mm.41484	NM_026900	ENSMUSG00000055633	Zfp580	1500015O20Rik|AI838225|Znf580	zinc finger protein 580	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-92605503-3	chr5	92605459	92605659	+	652.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175096, exon 2 of 2)	exon (NM_175096, exon 2 of 2)	2508.0	NM_175096	52331.0	Mm.21965	NM_175096	ENSMUSG00000047963	Stbd1	D530019K15Rik|D5Ertd593e	starch binding domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-54687279-4	chr13	54687173	54687373	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027396, intron 1 of 10)	CpG	535.0	NM_001146025	105239.0	Mm.25366	NM_134064	ENSMUSG00000034928	Rnf44	AI854545|mKIAA1100	ring finger protein 44	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-145233419-2	chr4	145233319	145233519	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011610, intron 1 of 9)	intron (NM_011610, intron 1 of 9)	13451.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-97295528-4	chr13	97295402	97295602	+	952.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54397.0	NM_007930	13803.0	Mm.241073	NM_007930	ENSMUSG00000041773	Enc1	Nrpb|PIG10	ectodermal-neural cortex 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-36210676-2	chr2	36210576	36210776	+	847.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19750.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-120980345-4	chr10	120980275	120980475	+	925.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1045.0	NM_001081193	380664.0	Mm.339371	NM_001081193	ENSMUSG00000048661	Lemd3	AI316861|Man1	LEM domain containing 3	protein-coding	-2.05752322593321	-2.15521190974092	-2.16307242109104	-2.16952927915413	-2.17938029103484	-2.15350850414045	-2.16129297361887	-2.16837350464794	-0.683654500252594	0.846597994014493	1
Merged-chr19-46522643-4	chr19	46522564	46522764	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	21016.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-95850507-2	chr8	95850407	95850607	+	614.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172758, intron 2 of 11)	intron (NM_172758, intron 2 of 11)	2984.0	NM_172758	234595.0	Mm.29267	NM_172758	ENSMUSG00000036534	Slc38a7	D430050E18	solute carrier family 38, member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-57275657-4	chr17	57275560	57275760	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-3440.0	NM_001163816	22324.0	Mm.248172	NM_011691	ENSMUSG00000034116	Vav1	Vav|vav-T	vav 1 oncogene	protein-coding	3.03475920601614	4.16416559494852	4.13997697764633	2.87174226088049	3.06145401449219	4.07477027709316	3.51471001870698	3.31825353853183	-0.209358695946154	0.720405882606871	0.998431161219273
Merged-chr15-50654261-2	chr15	50654161	50654361	+	754.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_032000)	TTS (NM_032000)	234788.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-20829894-2	chr1	20829794	20829994	+	786.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9582.0	NM_008563	17215.0	Mm.4502	NM_008563	ENSMUSG00000041859	Mcm3	AL033361|C80350|Mcmd|P1|P1-MCM3|p1.m	minichromosome maintenance complex component 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97443596-2	chr6	97443496	97443696	+	557.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	15690.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-115543390-2	chr8	115543290	115543490	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORSL|DNA|hAT-Tip100	163504.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-3502787-4	chr5	3502664	3502864	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 5 of 7)	intron (NM_009873, intron 5 of 7)	-41069.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-148655828-2	chr2	148655728	148655928	+	797.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16787.0	NM_019761	56488.0	Mm.34663	NM_019761	ENSMUSG00000036992	Nxt1	1110001N02Rik	NTF2-related export protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-119597798-4	chr13	119597709	119597909	+	999.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177666, intron 2 of 3)	intron (NM_001177666, intron 2 of 3)	-26010.0	NM_020279	56838.0	Mm.143745	NM_020279	ENSMUSG00000074715	Ccl28	CCK1|MEC|Scya28	chemokine (C-C motif) ligand 28	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-110839869-4	chr5	110839757	110839957	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016681)	promoter-TSS (NM_016681)	-80.0	NR_153348	100900.0	Mm.200231	NM_153571	ENSMUSG00000043510	Hscb	AI325508|AW049829|Hsc20	HscB iron-sulfur cluster co-chaperone	protein-coding	5.81584034242937	6.29528703377643	6.1468757157128	5.23588057877512	6.29101682016616	6.15019089214368	6.04819993195301	6.15804573122309	0.269200077926622	0.29100228374993	0.795742750399449
Merged-chr3-103112390-3	chr3	103112281	103112481	+	621.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-15175.0	NM_177857	329727.0	Mm.293641	NM_177857	ENSMUSG00000007379	Dennd2c	A930010I20Rik	DENN/MADD domain containing 2C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-138997690-4	chr5	138997574	138997774	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2721.0	NM_008808	18590.0	Mm.2675	NM_008808	ENSMUSG00000025856	Pdgfa	-	platelet derived growth factor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-120100715-3	chr1	120100619	120100819	+	659.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20200.0	NM_001037999	13167.0	Mm.2785	NM_007830	ENSMUSG00000026385	Dbi	ACBD1|Acbp|EP|endozepine	diazepam binding inhibitor	protein-coding	2.19866022112433	2.47396706059987	3.1327365122435	1.39068447456922	2.33285283335457	3.0305977647864	2.74884406725237	2.19643589021899	0.330677779218432	0.702784331143194	0.998431161219273
Merged-chr10-91189027-2	chr10	91188927	91189127	+	576.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR41|LTR|ERV1	-17408.0	NM_001080130	21917.0	Mm.159684	NM_011605	ENSMUSG00000019961	Tmpo	5630400D24Rik|AI195756|AI606875|AW214352|AW547477|LAP2|TP	thymopoietin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126828750-2	chr8	126828650	126828850	+	643.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	IMPB_01|Satellite|Satellite	-20270.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-94492252-3	chr8	94492222	94492422	+	796.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033207, intron 18 of 48)	intron (NM_001033207, intron 18 of 48)	-12724.0	NR_106040	102466800.0		NR_106040	ENSMUSG00000098511	Mir7072	Gm27665|mmu-mir-7072	microRNA 7072	ncRNA	1.24666124721569	0.726711274846261	0.713520840871674	0.703177814965779	1.14475608281835	1.44447547735692	1.78560675512285	1.21096742113977	2.44426300156427	0.0983011887991037	0.487631338152555
Merged-chr7-34910486-2	chr7	34910386	34910586	+	971.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1921.0	NM_008820	18624.0	Mm.69751	NM_008820	ENSMUSG00000063931	Pepd	Pep-4|Pep4|dal	peptidase D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-120044879-3	chr1	120044778	120044978	+	820.233337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001012322, intron 7 of 13)	intron (NM_001012322, intron 7 of 13)	28902.0	NM_019432	170706.0	Mm.24750	NM_019432	ENSMUSG00000050777	Tmem37	AI173373|AW540203|Pr|Pr1	transmembrane protein 37	protein-coding	2.1331946941714	2.78386891637764	2.7920179893401	2.71351797057261	2.39553251593493	1.54416648316196	3.07597826184549	3.0569897669045	0.067353231064617	0.93423696837859	0.998431161219273
Merged-chr17-35382859-2	chr17	35382760	35382960	+	791.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001143689, exon 4 of 6)	exon (NM_001143689, exon 4 of 6)	3243.0	NM_001143689	15015.0	Mm.464284	NM_001143689	ENSMUSG00000035929	H2-Q4	H-2Q4|H2-Gs10|Qa-4|Qa4|Qat-4|Qb-1|Qb1	histocompatibility 2, Q region locus 4	protein-coding	1.06385142359004	1.45635532405506	1.1665143359191	0.99731377533673	0.814940257652372	0.686281037986143	1.40915737256901	0.666492200558978	-1.10348198320542	0.448028965075225	0.914814758844887
Merged-chr17-48322545-4	chr17	48322444	48322644	+	960.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177083, intron 5 of 5)	intron (NM_177083, intron 5 of 5)	6382.0	NM_177083	320148.0	Mm.123455	NM_177083	ENSMUSG00000043740	B430306N03Rik	Treml6	RIKEN cDNA B430306N03 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90589989-2	chr2	90589889	90590089	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	-9342.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-78528086-4	chr9	78527979	78528179	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-46355.0	NM_010106	13627.0	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-73540667-2	chr7	73540567	73540767	+	908.900024	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_037569, exon 5 of 5)	non-coding (NR_037569, exon 5 of 5)	1079.0	NM_001081345	244059.0	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70698897-4	chr8	70698827	70699027	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010592, exon 1 of 1)	5' UTR (NM_010592, exon 1 of 1)	1188.0	NM_001286944	16478.0	Mm.419851	NM_010592	ENSMUSG00000071076	Jund	Jund1	jun D proto-oncogene	protein-coding	5.64657252352332	4.97779288974244	5.33646061250992	6.03022718251835	6.87669910098659	6.25730665664	6.47326528215655	6.74733235310746	1.15069154065152	8.96434562561275e-06	0.000419042410971825
Merged-chr1-59619617-4	chr1	59619524	59619724	+	806.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013771, intron 13 of 19)	ORR1F|LTR|ERVL-MaLR	51210.0	NM_009460	22218.0	Mm.362118	NM_009460	ENSMUSG00000026021	Sumo1	GMP1|PIC1|SENTRIN|SMT3|SMT3H3|SMTP3|SUMO-1|Smt3C|Ubl1	small ubiquitin-like modifier 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-84669936-2	chr7	84669836	84670036	+	644.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360577, intron 1 of 7)	intron (NM_001360577, intron 1 of 7)	9460.0	NM_022985	65098.0	Mm.209349	NM_022985	ENSMUSG00000030629	Zfand6	3110005P07Rik|Awp1|Za20d3	zinc finger, AN1-type domain 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-63711413-2	chr18	63711313	63711513	+	768.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001014981, intron 1 of 27)	intron (NM_001014981, intron 1 of 27)	2718.0	NM_001014981	104082.0	Mm.30850	NM_001014981	ENSMUSG00000040560	Wdr7	AI462727|TRAG|mKIAA0541	WD repeat domain 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-91685348-2	chr10	91685248	91685448	+	650.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-203481.0	NR_152729	102633867.0	Mm.351514	NR_152729	ENSMUSG00000111657	Gm31592	-	predicted gene, 31592	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-139308693-2	chr7	139308593	139308793	+	607.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60211.0	NM_001098636	101631.0	Mm.334300	NM_001033206	ENSMUSG00000060260	Pwwp2b	AI594893|D7Ertd517e|D930023J19Rik|Pwwp2	PWWP domain containing 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-51476532-2	chr3	51476432	51476632	+	550.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_053089)	TTS (NM_053089)	-7434.0	NM_016858	19338.0	Mm.1664	NM_016858	ENSMUSG00000027739	Rab33b	-	RAB33B, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-63702102-4	chr13	63702047	63702247	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_126476, intron 4 of 4)	intron (NR_126476, intron 4 of 4)	32151.0	NR_126476	75522.0	Mm.54259	NR_126476	ENSMUSG00000113825	1700024I08Rik	-	RIKEN cDNA 1700024I08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-59178256-3	chr6	59178177	59178377	+	746.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	-30593.0	NM_001081145	68140.0	Mm.25843	NM_001081145	ENSMUSG00000049232	Tigd2	3632410O17Rik	tigger transposable element derived 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-142441776-3	chr5	142441679	142441879	+	806.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199068, intron 2 of 8)	Tigger7|DNA|TcMar-Tigger	-22152.0	NM_172725	231855.0	Mm.78250	NM_172725	ENSMUSG00000039623	Ap5z1	C330006K01Rik	adaptor-related protein complex 5, zeta 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27318441-4	chr2	27318384	27318584	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_133905, intron 3 of 29)	intron (NR_133905, intron 3 of 29)	-71181.0	NM_138665	192166.0	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-75507098-2	chr18	75506998	75507198	+	791.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_201354, intron 9 of 11)	intron (NM_201354, intron 9 of 11)	-7547.0	NR_045879	100038353.0	Mm.440724	NR_045879	ENSMUSG00000097712	Gm10532	-	predicted gene 10532	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-16895510-4	chr12	16895362	16895562	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009072, intron 1 of 32)	CpG	484.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	3.49747471931424	3.84134369701951	3.46252191765941	3.88105676306722	2.79019021758389	4.2655607293887	4.29186690657795	3.77240500235131	0.305091918280858	0.565969878658644	0.962163739245057
Merged-chr3-50906090-3	chr3	50905953	50906153	+	909.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-318394.0	NM_009834	12457.0	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	1.4806141294638	0.900814256774273	1.50686974431037	1.34568903057935	1.49362013087201	0.903650363017768	1.51947778572097	1.35256311347901	0.0380864823707643	0.976624814861878	0.998431161219273
Merged-chr15-35296843-1	chr15	35296743	35296943	+	586.0	f0_balb.idr	intron (NM_054049, intron 1 of 3)	CpG	731.0	NM_054049	107587.0	Mm.46336	NM_054049	ENSMUSG00000022330	Osr2	5430409I15Rik|Osr2A|Osr2B	odd-skipped related 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-41556770-3	chr4	41556667	41556867	+	640.722229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027993, intron 1 of 5)	intron (NM_027993, intron 1 of 5)	12760.0	NM_001159583	71901.0	Mm.39215	NM_027993	ENSMUSG00000028439	Fam219a	2310028H24Rik	family with sequence similarity 219, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-58595545-3	chr15	58595507	58595707	+	750.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	180139.0	NM_145959	210998.0	Mm.3224	NM_145959	ENSMUSG00000037119	Fam91a1	AV220772|BC033609|D15Ertd621e|SKIN|mKIAA0493	family with sequence similarity 91, member A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128804873-2	chr2	128804767	128804967	+	590.583374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13436.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	1.86509193855195	1.5409647434417	1.05816402071042	2.52256412852947	1.88170289391614	1.55214794140479	1.06325871423132	1.9844041285159	-0.560277786196467	0.632526012815008	0.982230082053879
Merged-chr8-111745710-4	chr8	111745498	111745698	+	909.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1749.0	NM_009954	12927.0	Mm.3758	NM_009954	ENSMUSG00000031955	Bcar1	AI385681|Cas|Crkas	breast cancer anti-estrogen resistance 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-13983910-4	chr10	13983812	13984012	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358782, intron 1 of 9)	intron (NM_001358782, intron 1 of 9)	17533.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-32589970-2	chr11	32589870	32590070	+	740.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 7 of 18)	intron (NM_009288, intron 7 of 18)	-52585.0	NM_001271348	103583.0	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-12742277-2	chr17	12742177	12742377	+	735.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_027773, intron 1 of 2)	CpG	966.0	NR_027784	104103.0	Mm.26553	NR_002853	ENSMUSG00000078247	Airn	2810051F02Rik|2810434M15Rik|AI256653|AI597500|AW049873|Air|B930018I07Rik|D17Ertd663e|IGF2RAS	antisense Igf2r RNA	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-89339882-4	chr15	89339788	89339988	+	798.770813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5415.0	NM_019977	56727.0	Mm.158200	NM_019977	ENSMUSG00000022613	Miox	0610009I10Rik|AI314022|Aldrl6|C85427|RSOR	myo-inositol oxygenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-34208358-4	chr10	34208261	34208461	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172508)	promoter-TSS (NM_172508)	-810.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-161479999-3	chr1	161479911	161480111	+	922.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14646.0	NM_183391	240873.0	Mm.276823	NM_183391	ENSMUSG00000066755	Tnfsf18	Gitrl|Tnlg2a	tumor necrosis factor (ligand) superfamily, member 18	protein-coding	0.424291027569016	1.2304735177635	0.443350220292092	0.436224644190163	0.849324152428264	0.998457178550665	1.18393514227219	0.437472800052577	1.00206542580811	0.573067999591921	1
Merged-chr2-156201658-4	chr2	156201569	156201769	+	954.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172674, intron 1 of 17)	B3|SINE|B2	5022.0	NM_172674	228829.0	Mm.427078	NM_172674	ENSMUSG00000038116	Phf20	6820402O20Rik	PHD finger protein 20	protein-coding	2.82942884220795	3.54339056358305	3.63919193051952	2.76252506525121	3.7182362340951	3.30503983516688	2.58636834792357	2.89402904414119	-0.0722231832476658	0.90973668295885	0.998431161219273
Merged-chr7-30420422-4	chr7	30420316	30420516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011827)	promoter-TSS (NM_011827)	-562.0	NM_011827	23900.0	Mm.379050	NM_011827	ENSMUSG00000064109	Hcst	DAP10|KAP10	hematopoietic cell signal transducer	protein-coding	7.16410970085367	7.22344147332628	7.15966667120532	7.08233092718196	7.25432052495024	6.94521301373213	7.46296005355648	7.01267595600284	0.0298373976641549	0.858665458574964	0.998431161219273
Merged-chr8-46772998-1	chr8	46772898	46773098	+	911.0	f0_balb.idr	intron (NR_152560, intron 1 of 7)	intron (NR_152560, intron 1 of 7)	33253.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-62971391-4	chr18	62971271	62971471	+	843.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6545.0	NM_028017	108123.0	Mm.292687	NM_028017	ENSMUSG00000024581	Napg	2400003O04Rik|SNARE	N-ethylmaleimide sensitive fusion protein attachment protein gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-128729725-4	chr1	128729598	128729798	+	939.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1H|LTR|ERVL-MaLR	-137399.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	3.46946134603235	4.27676179877253	3.63459610777847	3.08258390212187	2.24091961648387	1.58695629011486	3.10556661717541	1.99590558960528	-2.24540145965379	0.0017780594373407	0.0306397578043517
Merged-chr6-32570103-3	chr6	32570009	32570209	+	764.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175750, intron 1 of 31)	intron (NM_175750, intron 1 of 31)	18083.0	NM_175750	243743.0	Mm.444029	NM_175750	ENSMUSG00000029765	Plxna4	9330117B14|Plxa4|mKIAA1550	plexin A4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-165770428-4	chr1	165770326	165770526	+	973.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149310, intron 3 of 4)	intron (NR_149310, intron 3 of 4)	6668.0	NM_011804	433375.0	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19282586-4	chr7	19282507	19282707	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013648)	promoter-TSS (NM_013648)	-17.0	NM_013648	20167.0	Mm.24142	NM_013648	ENSMUSG00000030401	Rtn2	MMS10-P|Ms10p|NSPLI|Nspl1	reticulon 2 (Z-band associated protein)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-36797351-2	chr15	36797251	36797451	+	762.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253806)	promoter-TSS (NM_001253806)	-422.0	NM_001253806	22631.0	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-98688838-3	chr7	98688743	98688943	+	745.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_144495, exon 1 of 1)	non-coding (NR_144495, exon 1 of 1)	14085.0	NR_144495	100040769.0	Mm.126401	NR_144495		Gm15506	-	predicted gene 15506	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-58076662-4	chr15	58076569	58076769	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001042438)	promoter-TSS (NM_001042438)	-161.0	NM_009572	22770.0	Mm.244931	NM_009572	ENSMUSG00000022361	Zhx1	-	zinc fingers and homeoboxes 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-31097070-6	chr3	31096974	31097174	+	936.5277710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_011386, exon 2 of 7)	5' UTR (NM_011386, exon 2 of 7)	2016.0	NM_001271772	20482.0	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-52465643-4	chr18	52465561	52465761	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026040)	promoter-TSS (NM_026040)	-32.0	NM_026040	67222.0	Mm.100617	NM_026040	ENSMUSG00000024528	Srfbp1	2810036K01Rik|p49/STRAP	serum response factor binding protein 1	protein-coding	5.79709140219963	5.9838608531366	5.9290541986902	5.20373316458367	5.70841196277458	6.01931879206105	5.40463899912534	5.0564101960345	-0.189852459925785	0.515700684786445	0.947402641287243
Merged-chr14-76414544-4	chr14	76414399	76414599	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310646)	promoter-TSS (NM_001310646)	-462.0	NM_001310646	21807.0	Mm.153272	NM_009366	ENSMUSG00000022010	Tsc22d1	AA589566|AW105905|Egr5|TSC-22|Tgfb1i4|Tsc|Tsc22	TSC22 domain family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-145750754-3	chr6	145750676	145750876	+	823.694458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57607.0	NM_027760	71323.0	Mm.158669	NM_027760	ENSMUSG00000030259	Rassf8	5133400D11Rik|AA815821|AW123240|Hoj1|mHoj-1	Ras association (RalGDS/AF-6) domain family (N-terminal) member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-59752070-3	chr9	59751969	59752169	+	888.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173018, intron 1 of 43)	intron (NM_173018, intron 1 of 43)	895.0	NM_173018	270163.0	Mm.249545	NM_173018	ENSMUSG00000039585	Myo9a	4732465J09Rik|C130068I12Rik|C230003M11	myosin IXa	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-79752009-4	chr15	79751882	79752082	+	949.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045069, intron 3 of 3)	intron (NR_045069, intron 3 of 3)	9284.0	NR_045069	100504191.0	Mm.421420	NR_045069	ENSMUSG00000087543	Gm16576	-	predicted gene 16576	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-41128464-4	chr13	41128344	41128544	+	891.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001324525, intron 4 of 27)	intron (NM_001324525, intron 4 of 27)	10433.0	NM_001324525	637277.0		NM_001324525	ENSMUSG00000038651	Sycp2l	EG621792|Gm268|Gm40956	synaptonemal complex protein 2-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-39562855-4	chr6	39562784	39562984	+	955.866699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5050.0	NM_172477	209773.0	Mm.440021	NM_172477	ENSMUSG00000038456	Dennd2a	B930096L08Rik|C130031G22|mKIAA1277	DENN/MADD domain containing 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-41449663-4	chr5	41449572	41449772	+	975.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	258019.0	NM_001310592	100972.0	Mm.41555	NM_027295	ENSMUSG00000029128	Rab28	2700023P08Rik|AW496496	RAB28, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-43304302-4	chr13	43304202	43304402	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033399)	promoter-TSS (NM_001033399)	-130.0	NM_001033399	328232.0	Mm.441399	NM_001033399	ENSMUSG00000051335	Gfod1	9630032O13|AI850995	glucose-fructose oxidoreductase domain containing 1	protein-coding	3.88350627883568	3.60309549883845	3.76266919149552	2.92912633795735	2.90187558962053	2.72997182127709	3.2514446467219	3.32787481126764	-0.833567276463529	0.152140866558101	0.605891304705569
Merged-chr14-88469242-2	chr14	88469142	88469342	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_178685, exon 3 of 3)	exon (NM_178685, exon 3 of 3)	2154.0	NM_178685	219257.0	Mm.128861	NM_178685	ENSMUSG00000050505	Pcdh20	C630015B17Rik|Pcdh13	protocadherin 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-93129657-4	chr5	93129552	93129752	+	866.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001009818, intron 1 of 9)	intron (NM_001009818, intron 1 of 9)	36236.0	NM_001347377	52398.0	Mm.394184	NM_001009818	ENSMUSG00000058013	Sept11	6230410I01Rik|AW548875|D5Ertd606e	septin 11	protein-coding	-0.0840960142750616	0.803014434913254	-0.0714139965511036	-0.0761633085536366	0.529240878382273	-0.0639134631493612	0.125210818895971	-0.075332069563394	-0.41579966566498	0.853832786846741	1
Merged-chr17-84057278-4	chr17	84057184	84057384	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21376.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3685985-4	chr19	3685904	3686104	+	877.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008513, intron 1 of 22)	CpG	560.0	NM_008513	16973.0	Mm.274581	NM_008513	ENSMUSG00000024913	Lrp5	BMND1|HBM|LR3|LRP7|OPPG|mKIAA4142	low density lipoprotein receptor-related protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-23208437-4	chr8	23208330	23208530	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018743)	promoter-TSS (NM_018743)	23.0	NM_018743	102247.0	Mm.200898	NM_018743	ENSMUSG00000031545	Gpat4	AU041707|AW545732|Agpat6|Tsarg7	glycerol-3-phosphate acyltransferase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-116987434-4	chr13	116987320	116987520	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081009, intron 3 of 26)	LTR31|LTR|ERV1	38096.0	NM_001081009	52552.0	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	4.06883979188245	4.33005087855476	4.08195989845552	5.0036610156782	2.71107083554187	2.37063623764504	2.2726922650473	3.9318384232898	-1.99894257855348	0.000631312547560366	0.013541992751423
Merged-chr13-107057262-4	chr13	107057165	107057365	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34695.0	NR_015471	100040322.0	Mm.133867	NR_015471	ENSMUSG00000071181	3830408C21Rik	-	RIKEN cDNA 3830408C21 gene	ncRNA	4.24575009766842	5.17014381812637	5.18876315205052	4.60927356951942	4.28024558731203	5.34321806889438	5.22356911648369	4.63136779564435	0.091970747556966	0.810442471053419	0.998431161219273
Merged-chr8-115568571-4	chr8	115568462	115568662	+	943.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	138332.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-79625026-4	chr11	79624933	79625133	+	941.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175543, intron 3 of 14)	intron (NM_175543, intron 3 of 14)	-1870.0	NR_003283	790912.0	Mm.447313	NR_003283	ENSMUSG00000087434	Rab11fip4os1	Gm11202	RAB11 family interacting protein 4 (class II), opposite strand 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-81132098-4	chr13	81131943	81132143	+	953.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 87 of 89)	intron (NM_054053, intron 87 of 89)	167969.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-33184521-2	chr15	33184421	33184621	+	541.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_018755, intron 2 of 8)	intron (NM_018755, intron 2 of 8)	101392.0	NM_176073	54381.0	Mm.158251	NM_018755	ENSMUSG00000039007	Cpq	1190003P12Rik|2610034C17Rik|Hls2|Lal-1|Pgcp	carboxypeptidase Q	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-96035250-4	chr10	96035155	96035355	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001932, intron 22 of 28)	MTEa|LTR|ERVL-MaLR	94592.0	NM_001001932	216238.0	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41313922-4	chr19	41313820	41314020	+	957.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 8 of 16)	intron (NM_031376, intron 8 of 16)	-49916.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	3.08781428469242	2.9391597890869	2.17807400348246	4.14619596574	3.77490817788911	2.66504319695531	3.09291652536848	3.35335101902436	-0.00822779238932016	0.990393018794253	0.998431161219273
Merged-chr9-57485936-2	chr9	57485836	57486036	+	985.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17876.0	NM_001301635	56807.0	Mm.102278	NM_020270	ENSMUSG00000040722	Scamp5	Sc5	secretory carrier membrane protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-52420899-2	chr10	52420799	52420999	+	808.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030250, intron 1 of 4)	intron (NM_030250, intron 1 of 4)	3352.0	NM_030250	52014.0	Mm.199964	NM_030250	ENSMUSG00000023068	Nus1	1600027K07Rik|AU019165|AW538011|BC003223|D10Ertd438e	NUS1 dehydrodolichyl diphosphate synthase subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-124273306-2	chr2	124273206	124273406	+	601.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290997, intron 2 of 20)	Lx5|LINE|L1	-50948.0	NR_040612	75946.0	Mm.415059	NR_040612	ENSMUSG00000086954	4930583P06Rik	-	RIKEN cDNA 4930583P06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-135685154-4	chr1	135685041	135685241	+	823.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34922.0	NM_001360782	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90559111-4	chr2	90559020	90559220	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	21527.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-32238628-4	chr4	32238522	32238722	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-178813.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	-1.84362945061595	-1.81329140012928	-1.67810947190254	-1.83000206547234	-1.84149977556685	-1.81130325271815	-1.67603257143677	-1.82865309133977	0.037684011990387	0.991491645451152	1
Merged-chr19-8990374-2	chr19	8990274	8990474	+	777.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039959, intron 1 of 5)	(TGGGGG)n|Simple_repeat|Simple_repeat	1090.0	NM_001286518	66395.0	Mm.203866	NM_009643	ENSMUSG00000069833	Ahnak	DY6	AHNAK nucleoprotein (desmoyokin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-86278720-4	chr15	86278604	86278804	+	841.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358062, intron 1 of 9)	intron (NM_001358062, intron 1 of 9)	1029.0	NM_001358062	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-9917962-4	chr19	9917884	9918084	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18451.0	NM_016692	16319.0	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	2.61755650231054	3.30799893846296	3.09199354141254	3.3622695714593	3.70801237724573	3.75619896284613	3.99791320459736	1.90666810591887	0.672993824401952	0.311950877001556	0.813656822463875
Merged-chr5-102031066-4	chr5	102030959	102031159	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 2 of 66)	intron (NM_172882, intron 2 of 66)	38862.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-9006445-2	chr3	9006344	9006544	+	899.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-1721.0	NM_001357075	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	0.963790874073722	0.484416650547862	0.665174775665953	0.46866141328591	0.752274109399001	0.486406234883926	1.09090971949199	1.32383173721362	1.54293013331542	0.354704885963682	1
Merged-chr4-117835060-2	chr4	117834960	117835160	+	734.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008135)	promoter-TSS (NM_008135)	-198.0	NM_008135	14664.0	Mm.244549	NM_008135	ENSMUSG00000028542	Slc6a9	Glyt-1|Glyt1	solute carrier family 6 (neurotransmitter transporter, glycine), member 9	protein-coding	1.42424203204448	0.562800800921748	1.41401296844793	0.542749273295316	0.530125186144632	0.565314331707923	0.93691045803044	1.27166464124269	-0.856966695576233	0.612672240119311	0.976548412604232
Merged-chr4-32560441-4	chr4	32560378	32560578	+	972.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_026843, exon 5 of 5)	non-coding (NR_026843, exon 5 of 5)	11184.0	NR_026843	414068.0	Mm.389550	NR_026843	ENSMUSG00000086150	Bach2os	-	BTB and CNC homology 2, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-113669865-3	chr13	113669768	113669968	+	864.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6192.0	NM_019960	56534.0	Mm.41410	NM_019960	ENSMUSG00000051456	Hspb3	2310035K17Rik|AI844863|Hsbp3|spb3	heat shock protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-37249748-3	chr10	37249614	37249814	+	747.200012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-110788.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-84462967-2	chr11	84462867	84463067	+	660.525024	f1_balb.idr|f1_c57bl6.idr	intron (NM_019816, intron 9 of 12)	ORR1D2|LTR|ERVL-MaLR	50534.0	NM_019816	56321.0	Mm.257482	NM_019816	ENSMUSG00000018697	Aatf	4933415H02Rik|5830465M17Rik|Che-1|Trb	apoptosis antagonizing transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28015171-1	chr17	28015071	28015271	+	695.0	f0_balb.idr	intron (NM_181413, intron 12 of 24)	intron (NM_181413, intron 12 of 24)	65413.0	NM_001357681	21463.0	Mm.29758	NM_013687	ENSMUSG00000062859	Tcp11	D17Ken1|Tcp-11	t-complex protein 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-46844163-2	chr7	46844063	46844263	+	888.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1641.0	NM_010699	16828.0	Mm.29324	NM_010699	ENSMUSG00000063229	Ldha	Ldh1|Ldhm|l7R2	lactate dehydrogenase A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100738313-4	chr11	100738204	100738404	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024456)	promoter-TSS (NM_024456)	-89.0	NM_001305003	19345.0	Mm.29829	NM_024456	ENSMUSG00000019173	Rab5c	AI326010|Rabl	RAB5C, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-50588363-4	chr16	50588248	50588448	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2155.0	NR_040566	75211.0	Mm.399337	NR_040566		4930542D17Rik	-	RIKEN cDNA 4930542D17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127597484-4	chr10	127597399	127597599	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 6 of 88)	intron (NM_008512, intron 6 of 88)	23649.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-69823327-1	chr2	69823227	69823427	+	595.0	f0_balb.idr	intron (NM_001360394, intron 1 of 3)	intron (NM_001360394, intron 1 of 3)	486.0	NM_001360394	277396.0	Mm.138073	NM_177784	ENSMUSG00000042155	Klhl23	C130068N17Rik	kelch-like 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-4232813-3	chr11	4232704	4232904	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3981.0	NM_001013365	18413.0	Mm.131422	NM_001013365	ENSMUSG00000058755	Osm	OncoM	oncostatin M	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-14312450-2	chr2	14312350	14312550	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008625, intron 21 of 29)	intron (NM_008625, intron 21 of 29)	51447.0	NR_030609	100124488.0		NR_030609	ENSMUSG00000077897	Mir511	Mirn511|mir-511|mmu-mir-511	microRNA 511	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-18289368-4	chr16	18289270	18289470	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033324)	promoter-TSS (NM_033324)	-202.0	NM_033324	94223.0	Mm.447352	NM_033324	ENSMUSG00000022718	Dgcr8	D16H22S1742E|D16H22S788E|D16Wis2|Gy1|N41|Vo59c07|mir-1306	DGCR8, microprocessor complex subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-74271411-4	chr4	74271324	74271524	+	880.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356561, intron 2 of 20)	intron (NM_001356561, intron 2 of 20)	19545.0	NM_001356561	76804.0	Mm.209059	NM_144787	ENSMUSG00000028397	Kdm4c	2410141F18Rik|AA517467|Gasc1|Jmjd2c	lysine (K)-specific demethylase 4C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-139949981-4	chr7	139949888	139950088	+	761.825012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6132.0	NM_009482	22286.0	Mm.10205	NM_009482	ENSMUSG00000047751	Utf1	AI505934	undifferentiated embryonic cell transcription factor 1	protein-coding	-1.50561175621786	-1.47331375025452	-1.02203377115094	-1.49110398925286	-1.50334449591826	-1.47119716082604	-1.48086985756939	-1.48966786617048	-2.07776723614574	0.550394407909386	1
Merged-chr9-14893628-3	chr9	14893530	14893730	+	812.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176807, intron 4 of 4)	MTEb|LTR|ERVL-MaLR	10321.0	NM_176807	64931.0	Mm.86738	NM_022888	ENSMUSG00000031933	Izumo1r	0910001L11Rik|C86255|Folbp3|Folr4|Juno	IZUMO1 receptor, JUNO	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-55817153-2	chr16	55817053	55817253	+	925.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159395, intron 6 of 12)	(T)n|Simple_repeat|Simple_repeat	4985.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191279201-2	chr1	191279101	191279301	+	564.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38917.0	NM_025424	66208.0	Mm.46444	NM_025424	ENSMUSG00000037499	Nenf	1110060M21Rik|SCIRP10|Spuf	neuron derived neurotrophic factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-119476118-2	chr6	119476018	119476218	+	873.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009525, intron 1 of 4)	intron (NM_009525, intron 1 of 4)	-3550.0	NM_133940	101358.0	Mm.125477	NM_133940	ENSMUSG00000030019	Fbxl14	AW322056|Fbx14l	F-box and leucine-rich repeat protein 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-9826333-4	chr3	9826245	9826445	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195031, intron 1 of 8)	intron (NM_001195031, intron 1 of 8)	7334.0	NM_053182	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-30604349-2	chr15	30604249	30604449	+	577.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355502, intron 3 of 21)	MLT1G|LTR|ERVL-MaLR	431756.0	NM_008729	18163.0	Mm.321648	NM_008729	ENSMUSG00000022240	Ctnnd2	Catnd2|Nprap|neurojugin	catenin (cadherin associated protein), delta 2	protein-coding	-1.50811478453619	-0.99851579554048	-1.48484165847197	-1.49312904261012	-1.50577282675516	-1.47256636097272	-1.48255773576353	-1.49164560481169	-2.24133836997777	0.518237887813808	1
Merged-chr7-125420355-2	chr7	125420253	125420453	+	753.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24267.0	NM_029842	77035.0	Mm.307239	NM_029842	ENSMUSG00000030752	Kdm8	3110005O21Rik|Jmjd5	lysine (K)-specific demethylase 8	protein-coding	2.21160032460918	1.19884891952573	2.01911857400279	1.37491225156961	2.30283841447906	2.10700937668049	1.60679862888162	1.85221407343324	0.582530201325267	0.581976272244297	0.966599221005409
Merged-chr4-149104078-4	chr4	149103956	149104156	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010044)	promoter-TSS (NM_010044)	-86.0	NR_104263	13347.0	Mm.41433	NM_010044	ENSMUSG00000028974	Dffa	A330085O09Rik|DFF35|Dff45|ICAD|ICAD-L|ICAD-S	DNA fragmentation factor, alpha subunit	protein-coding	3.97273326426674	4.31775530337407	4.2394386438025	4.62025405577826	4.66198236350813	3.88741282419638	5.19576701817412	4.64170796413923	0.473971321750271	0.249583746195861	0.747873365654632
Merged-chr3-88192404-2	chr3	88192304	88192504	+	921.3333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14619.0	NR_045997	76642.0	Mm.424420	NR_045997	ENSMUSG00000096935	1700113A16Rik	2210408E11Rik|AA408983	RIKEN cDNA 1700113A16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-97751973-4	chr4	97751887	97752087	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122952, intron 1 of 10)	CpG	-25639.0	NM_001122953	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-5838027-4	chr11	5837924	5838124	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017401)	promoter-TSS (NM_017401)	-8.0	NM_017401	54125.0	Mm.260194	NM_017401	ENSMUSG00000020474	Polm	AI462166|B230309I03Rik|Tdt-N	polymerase (DNA directed), mu	protein-coding	3.77145868123508	3.76530729968531	4.95531816501731	4.63355931173664	4.02621016700677	3.69958599932962	3.83228709233231	3.63421750282654	-0.777585314241563	0.100882244867724	0.494458880374175
Merged-chr4-6367036-3	chr4	6366898	6367098	+	920.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001098227, intron 1 of 8)	intron (NM_001098227, intron 1 of 8)	1318.0	NM_001098227	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101984250-4	chr11	101984170	101984370	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028207, intron 1 of 2)	intron (NM_028207, intron 1 of 2)	521.0	NM_028207	72349.0	Mm.196295	NM_028207	ENSMUSG00000003518	Dusp3	2210015O03Rik|5031436O03Rik|T-DSP11|VHR	dual specificity phosphatase 3 (vaccinia virus phosphatase VH1-related)	protein-coding	5.99703015968191	6.23812052194679	5.79631628492497	5.63744630329335	5.72903163026918	5.48765571113729	6.16648049123652	5.68530160930202	-0.157522375583503	0.539600955414234	0.954403851908463
Merged-chr8-123030171-1	chr8	123030071	123030271	+	931.0	f1_balb.idr	intron (NM_001081379, intron 1 of 12)	(TG)n|Simple_repeat|Simple_repeat	12113.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91077853-2	chr16	91077753	91077953	+	749.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR6B_Mm|LTR|ERV1	-8708.0	NM_028905	74387.0	Mm.236220	NM_028905	ENSMUSG00000039851	4932438H23Rik	4931406G06Rik|AI550392	RIKEN cDNA 4932438H23 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-82177966-2	chr11	82177866	82178066	+	673.983337	f1_balb.idr|f1_c57bl6.idr	intron (NM_011329, intron 2 of 2)	intron (NM_011329, intron 2 of 2)	1846.0	NM_011329	20290.0	Mm.1283	NM_011329	ENSMUSG00000020702	Ccl1	BF534335|I-309|P500|Scya1|Tca-3|Tca3	chemokine (C-C motif) ligand 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-34535181-4	chr5	34535147	34535347	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011893, intron 1 of 12)	intron (NM_011893, intron 1 of 12)	-8118.0	NM_001145858	24055.0	Mm.5012	NM_011893	ENSMUSG00000054520	Sh3bp2	3BP2	SH3-domain binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-36534828-2	chr5	36534728	36534928	+	710.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133910, intron 3 of 13)	ORR1E|LTR|ERVL-MaLR	-4205.0	NM_001113364	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-44120309-4	chr16	44120203	44120403	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007508, intron 1 of 14)	intron (NM_007508, intron 1 of 14)	18956.0	NM_001358203	11964.0	Mm.217787	NM_007508	ENSMUSG00000052459	Atp6v1a	AI647066|Atp6a1|Atp6a2|Atp6v1a1|VA68|VPP2	ATPase, H+ transporting, lysosomal V1 subunit A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-49759173-4	chr7	49759102	49759302	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146052)	promoter-TSS (NM_001146052)	96.0	NM_001146049	53415.0	Mm.20801	NM_016865	ENSMUSG00000039745	Htatip2	AW111545|Cc3|Tip30	HIV-1 Tat interactive protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-23665941-4	chr11	23665848	23666048	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023651)	promoter-TSS (NM_023651)	-13.0	NM_023651	72129.0	Mm.29536	NM_023651	ENSMUSG00000020283	Pex13	2610008O20Rik	peroxisomal biogenesis factor 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84947318-2	chr8	84947224	84947424	+	682.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357328)	promoter-TSS (NM_001357328)	333.0	NM_001357326	234542.0	Mm.461701	NM_144929	ENSMUSG00000048617	Rtbdn	A330096I21Rik|BC022744|Rtbnd	retbindin	protein-coding	0.448945644688439	0.476895349385897	0.820103707654517	1.2299516600958	0.4507135174264	0.865987449465746	0.665582607969369	1.23906595371005	0.249857632585796	0.88218440302391	1
Merged-chr6-100286713-4	chr6	100286602	100286802	+	871.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019743, intron 1 of 4)	CpG	656.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-48195255-2	chr17	48195155	48195355	+	628.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27998.0	NM_178796	328830.0	Mm.470939	NM_178796	ENSMUSG00000043939	A530064D06Rik	Trem4|pdctrem	RIKEN cDNA A530064D06 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-103265429-4	chr11	103265329	103265529	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016896, intron 1 of 15)	intron (NM_016896, intron 1 of 15)	1972.0	NM_016896	53859.0	Mm.158981	NM_016896	ENSMUSG00000020941	Map3k14	Nik|aly	mitogen-activated protein kinase kinase kinase 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-44895455-3	chr19	44895363	44895563	+	674.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35656.0	NM_172638	226151.0	Mm.212609	NM_172638	ENSMUSG00000036097	Slf2	3632432H19|Fam178a	SMC5-SMC6 complex localization factor 2	protein-coding	1.98098099645796	2.77669852456634	2.39212983866437	1.94093975898842	2.3232307754143	2.70490434145597	2.16007020810123	1.58758534650656	-0.141442617182447	0.872588943701233	0.998431161219273
Merged-chr2-25557785-4	chr2	25557680	25557880	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021519)	promoter-TSS (NM_021519)	-120.0	NM_021519	59022.0	Mm.29945	NM_021519	ENSMUSG00000015092	Edf1	0610008L11Rik|AA409425	endothelial differentiation-related factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-118425314-2	chr5	118425214	118425414	+	587.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-135405.0	NM_001347445	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80655847-1	chr10	80655747	80655947	+	543.0	f1_c57bl6.idr	intron (NM_145361, intron 1 of 8)	intron (NM_145361, intron 1 of 8)	1224.0	NM_145361	208198.0	Mm.60720	NM_145361	ENSMUSG00000003344	Btbd2	2610037C03Rik|4930512K17Rik	BTB (POZ) domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75907635-1	chr11	75907535	75907735	+	611.0	f0_balb.idr	intron (NM_029548, intron 2 of 7)	intron (NM_029548, intron 2 of 7)	3424.0	NM_029548	380714.0	Mm.425697	NM_029548	ENSMUSG00000020847	Rph3al	Gm1753|Noc2	rabphilin 3A-like (without C2 domains)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-30930286-2	chr5	30930186	30930386	+	544.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310524, intron 6 of 8)	intron (NM_001310524, intron 6 of 8)	8727.0	NM_001310524	16548.0	Mm.22451	NM_008439	ENSMUSG00000029162	Khk	-	ketohexokinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-59074588-4	chr19	59074503	59074703	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114312, intron 1 of 16)	intron (NM_001114312, intron 1 of 16)	1466.0	NM_175172	71653.0	Mm.37338	NM_175172	ENSMUSG00000041362	Shtn1	4930506M07Rik|Shootin1|mKIAA1598	shootin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-66369249-4	chr7	66369154	66369354	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146191, intron 2 of 33)	L1MC5|LINE|L1	12470.0	NR_106024	102465640.0		NR_106024	ENSMUSG00000098353	Mir7057	Gm27550|mmu-mir-7057	microRNA 7057	ncRNA	4.71112713507914	3.183346081902	4.22765704621103	3.41153052558887	3.71233088932281	3.45887942171517	4.71336113552808	4.02246698728943	0.0347141771468314	0.948181385625148	0.998431161219273
Merged-chr3-129431416-2	chr3	129431316	129431516	+	694.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2257.0	NR_033594	435755.0	Mm.430561	NR_033594	ENSMUSG00000105712	Pou5f1-rs4	EG435755|Gm5712|Oct4P1|Otf3-rs4|Otf3d	POU domain, class 5, transcription factor 1, related sequence 4	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-155811930-3	chr2	155811830	155812030	+	806.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010808, intron 6 of 8)	intron (NM_010808, intron 6 of 8)	7273.0	NR_015528	613262.0	Mm.330707	NR_015528	ENSMUSG00000074649	BC029722	-	cDNA sequence BC029722	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30561258-1	chr7	30561158	30561358	+	542.0	f1_balb.idr	TTS (NM_025498)	TTS (NM_025498)	-1612.0	NM_001290569	75660.0	Mm.379242	NM_029377	ENSMUSG00000036845	Lin37	1810054G18Rik	lin-37 homolog (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-67532837-3	chr6	67532744	67532944	+	676.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	2978.0	NM_020047	56753.0	Mm.439913	NM_020047	ENSMUSG00000051397	Tacstd2	C80403|EGP-1|GA733-1|Ly97|TROP2	tumor-associated calcium signal transducer 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-122349498-1	chr2	122349398	122349598	+	570.0	f1_c57bl6.idr	exon (NM_001013829, exon 6 of 6)	exon (NM_001013829, exon 6 of 6)	19420.0	NM_001013829	435684.0	Mm.458215	NM_001013829	ENSMUSG00000033256	Shf	-	Src homology 2 domain containing F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117486582-2	chr8	117486482	117486682	+	574.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-11693.0	NM_172285	234779.0	Mm.192699	NM_172285	ENSMUSG00000034330	Plcg2	PLC-gamma-2|PLCgamma2|Plcg-2	phospholipase C, gamma 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-135721777-2	chr7	135721677	135721877	+	625.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR52|LTR|ERVL	-5398.0	NM_001081117	17345.0	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-23980470-2	chr16	23980370	23980570	+	596.5	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001348026, exon 1 of 10)	5' UTR (NM_001348026, exon 1 of 10)	813.0	NM_001348026	12053.0	Mm.347398	NM_009744	ENSMUSG00000022508	Bcl6	Bcl5	B cell leukemia/lymphoma 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-86224246-4	chr3	86224135	86224335	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030695)	promoter-TSS (NM_030695)	-455.0	NM_030695	80877.0	Mm.439825	NM_030695	ENSMUSG00000028080	Lrba	C80285|D3Ertd775e|Lab300|Lba	LPS-responsive beige-like anchor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-149102536-1	chr2	149102436	149102636	+	564.0	f1_c57bl6.idr	Intergenic	L1Md_F|LINE|L1	-227024.0	NM_009976	13010.0	Mm.4263	NM_009976	ENSMUSG00000027447	Cst3	CysC	cystatin C	protein-coding	0.0426139982398515	0.988379675613343	0.921973179587435	0.0530371141195793	0.0441757892925553	0.296954236224316	0.0609928579387828	0.0541238549314089	-3.44408171293475	0.104445067233873	1
Merged-chr6-97487379-1	chr6	97487279	97487479	+	1000.0	f0_balb.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	441.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	2.70959763253972	1.88013997162236	3.32291128504272	3.56492085156749	3.08465703911054	1.58929783552754	2.74297851012537	4.13712907002462	0.295036344007537	0.719309134570179	0.998431161219273
Merged-chr2-119475149-1	chr2	119475049	119475249	+	605.0	f1_balb.idr	intron (NM_026574, intron 1 of 35)	intron (NM_026574, intron 1 of 35)	2480.0	NM_026574	68142.0	Mm.330496	NM_026574	ENSMUSG00000034154	Ino80	2310079N15Rik|4632409L19Rik|Inoc1	INO80 complex subunit	protein-coding	1.83451610420769	2.5766784735221	2.26475985235086	2.20103671290872	1.69335691329499	2.873780581342	2.50889929247133	1.77101931661826	0.161873175042621	0.85591088654309	0.998431161219273
Merged-chr11-46804627-4	chr11	46804553	46804753	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6146.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-47455228-2	chr19	47455129	47455329	+	696.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008018, intron 1 of 14)	intron (NM_008018, intron 1 of 14)	9182.0	NM_001164717	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-27391175-1	chr16	27391075	27391275	+	544.0	f1_balb.idr	intron (NM_001025615, intron 1 of 9)	intron (NM_001025615, intron 1 of 9)	2219.0	NM_001289436	67501.0	Mm.258985	NM_026202	ENSMUSG00000038127	Ccdc50	C3orf6	coiled-coil domain containing 50	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-94282064-2	chr13	94281964	94282164	+	620.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346609, intron 1 of 8)	intron (NM_001346609, intron 1 of 8)	3217.0	NM_029153	107767.0	Mm.201455	NM_029153	ENSMUSG00000021687	Scamp1	4930505M11Rik|AI415563|AW122395	secretory carrier membrane protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-114473784-4	chr8	114473685	114473885	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019573, intron 4 of 8)	intron (NM_019573, intron 4 of 8)	34133.0	NM_019573	80707.0	Mm.440420	NM_019573	ENSMUSG00000004637	Wwox	5330426P09Rik|9030416C10Rik|WOX1	WW domain-containing oxidoreductase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-35430745-4	chr8	35430668	35430868	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55027.0	NM_177741	244416.0	Mm.247126	NM_177741	ENSMUSG00000046794	Ppp1r3b	6430576E21|AW821953|GL|PTG	protein phosphatase 1, regulatory (inhibitor) subunit 3B	protein-coding	3.35494319561648	3.67707417629593	3.36995872726041	3.68556805017154	4.15990397161869	4.14342804008915	3.95261183194701	3.47248695688486	0.629920696112745	0.19707245875225	0.679056680100371
Merged-chr5-29434702-4	chr5	29434594	29434794	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033457)	promoter-TSS (NM_001033457)	27.0	NM_001033457	433864.0	Mm.262815	NM_001033457	ENSMUSG00000001569	Nom1	D5Kng1|Gm1040	nucleolar protein with MIF4G domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-68796690-2	chr2	68796592	68796792	+	830.333374	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-64749.0	NM_172856	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80855235-4	chr10	80855130	80855330	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025349)	promoter-TSS (NM_025349)	-21.0	NM_001359148	66094.0	Mm.379101	NM_025349	ENSMUSG00000035215	Lsm7	0910001B06Rik|1110033F18Rik	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-90225439-4	chr11	90225347	90225547	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24029.0	NM_026178	67468.0	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-40958340-4	chr15	40958232	40958432	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356998, intron 4 of 6)	intron (NM_001356998, intron 4 of 6)	-215369.0	NR_151516	100418302.0		NR_151516		4930555K19Rik	-	leucine rich repeat and sterile alpha motif containing 1 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-13870443-3	chr6	13870354	13870554	+	843.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001352887, exon 3 of 3)	3' UTR (NM_001352887, exon 3 of 3)	1064.0	NM_001352887	66520.0	Mm.29615	NM_183258		2610001J05Rik	C79299	RIKEN cDNA 2610001J05 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-106751582-2	chr10	106751482	106751682	+	916.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359698, intron 2 of 28)	Lx6|LINE|L1	119054.0	NM_001359686	327814.0	Mm.391424	NM_177373	ENSMUSG00000053825	Ppfia2	5330438O12|B230207K17Rik|E130120L08Rik|mKIAA4112	protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-143052059-3	chr5	143051975	143052175	+	864.888855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359851, intron 12 of 15)	intron (NM_001359851, intron 12 of 15)	60945.0	NM_207110	108086.0	Mm.381440	NM_080561	ENSMUSG00000045078	Rnf216	2810055G22Rik|AI647468|AU019462|C86502|F830018F18Rik|TRIAD3|UIP83|Ubce7ip1	ring finger protein 216	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32154826-2	chr2	32154726	32154926	+	547.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172661, intron 1 of 29)	intron (NM_172661, intron 1 of 29)	3678.0	NM_001159634	227723.0	Mm.25504	NM_172661	ENSMUSG00000039262	Prrc2b	5830434P21Rik|AI173903|Bat2l|Bat2l1|D430039P21|mKIAA0515	proline-rich coiled-coil 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-69995556-2	chr8	69995456	69995656	+	881.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286450, intron 1 of 12)	intron (NM_001286450, intron 1 of 12)	828.0	NM_001286450	234366.0	Mm.270044	NM_145596	ENSMUSG00000036180	Gatad2a	1110066C11Rik|BC031407|C80248	GATA zinc finger domain containing 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-39276634-2	chr4	39276539	39276739	+	652.0	f0_c57.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	-173654.0	NM_001081095	75471.0	Mm.23522	NM_001081095	ENSMUSG00000028287	1700009N14Rik	AI429145	RIKEN cDNA 1700009N14 gene	protein-coding	2.32508005852963	1.23785813354837	1.59410133612043	2.76934529829866	0.870304351944281	0.958892578271874	0.931505551487447	2.06310698258563	-2.13252259467639	0.0916431690328736	0.468285665271047
Merged-chr12-79638134-3	chr12	79638028	79638228	+	754.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	286605.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-59196900-2	chr6	59196800	59197000	+	585.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11970.0	NM_001081145	68140.0	Mm.25843	NM_001081145	ENSMUSG00000049232	Tigd2	3632410O17Rik	tigger transposable element derived 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117438596-1	chr10	117438496	117438696	+	733.0	f1_c57bl6.idr	Intergenic	RLTR20C1_MM|LTR|ERVK	8839.0	NR_152734	102634600.0	Mm.399106	NR_152734	ENSMUSG00000112344	Gm32141	-	predicted gene, 32141	ncRNA	0.541034559644706	0.405719070890347	1.41171788885633	0.388931686275971	0.546277681588517	0.407830772412368	1.04097699538635	0.873430237110259	-0.185475739236324	0.913417595991344	1
Merged-chr4-53315863-2	chr4	53315763	53315963	+	876.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45631.0	NR_033139	381524.0	Mm.23351	NM_001033454	ENSMUSG00000086712	AI427809	Gm1659	expressed sequence AI427809	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-97647778-3	chr1	97647686	97647886	+	909.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355071, intron 1 of 1)	intron (NM_001355071, intron 1 of 1)	13890.0	NM_001355074	52392.0	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-9761761-2	chr13	9761661	9761861	+	627.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347474, intron 1 of 14)	intron (NM_001347474, intron 1 of 14)	2049.0	NM_001347471	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-120776758-4	chr9	120776638	120776838	+	918.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	138512.0	NR_040742	76402.0	Mm.436588	NR_040742	ENSMUSG00000100146	1700020M21Rik	-	RIKEN cDNA 1700020M21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36568985-2	chr1	36568885	36569085	+	802.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001126046, intron 12 of 14)	ID_B1|SINE|B4	-10604.0	NM_001126047	20353.0	Mm.29558	NM_001126047	ENSMUSG00000026121	Sema4c	AI426163|M-Sema F|Semacl1|Semaf|Semai|sema I	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-74692432-2	chr15	74692332	74692532	+	718.916687	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-16729.0	NR_033197	66769.0	Mm.482908	NM_025756	ENSMUSG00000044276	4933427E11Rik	-	RIKEN cDNA 4933427E11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-54863676-4	chr9	54863579	54863779	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022655)	promoter-TSS (NM_022655)	-76.0	NM_022655	64602.0	Mm.208991	NM_022655	ENSMUSG00000032293	Ireb2	D9Ertd85e|Irp2	iron responsive element binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-14890244-2	chr18	14890144	14890344	+	641.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001100449, intron 14 of 14)	intron (NM_001100449, intron 14 of 14)	-98751.0	NR_045372	74456.0	Mm.391075	NR_045372		4933424G05Rik	-	RIKEN cDNA 4933424G05 gene	ncRNA	-1.50521573392704	-1.47308608574264	-1.32992105947561	-1.33790229361015	-1.50296029203223	-1.4709805293264	-1.32772150873953	-1.48935495358987	-0.740724393039831	0.817430434688735	1
Merged-chr17-64974510-2	chr17	64974410	64974610	+	561.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-138439.0	NM_030031	78057.0	Mm.109380	NM_030031	ENSMUSG00000024088	4930583I09Rik	-	RIKEN cDNA 4930583I09 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-86863654-3	chr10	86863529	86863729	+	748.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138673, intron 54 of 68)	intron (NM_138673, intron 54 of 68)	84624.0	NM_175331	103466.0	Mm.200446	NM_175331	ENSMUSG00000054027	Nt5dc3	AU040402|AW540062|C630002B14Rik|TU12B1-TY	5'-nucleotidase domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-28166838-2	chr5	28166733	28166933	+	599.5	f0_balb.idr|f1_c57bl6.idr	exon (NM_010134, exon 1 of 2)	exon (NM_010134, exon 1 of 2)	1137.0	NM_010134	13799.0	Mm.4298	NM_010134	ENSMUSG00000039095	En2	BB131122|En-2	engrailed 2	protein-coding	-0.0921753124071563	-0.0681998217588778	-0.0759370803435408	-0.0819830939997895	-0.0906464577846763	0.892048790823653	-0.0742211155165179	0.856467813519415	4.27917153337412	0.0580751495776728	1
Merged-chr4-88471735-3	chr4	88471623	88471823	+	649.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32797.0	NM_025760	66775.0	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-95385797-2	chr11	95385697	95385897	+	762.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016752, intron 1 of 8)	intron (NM_016752, intron 1 of 8)	941.0	NM_001357797	110172.0	Mm.4593	NM_016752	ENSMUSG00000020873	Slc35b1	UGTrel1|Ugalt2	solute carrier family 35, member B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118631801-4	chr9	118631688	118631888	+	866.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 3 of 27)	Lx5c|LINE|L1	25079.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76799617-4	chr15	76799515	76799715	+	949.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198420, intron 1 of 10)	intron (NM_198420, intron 1 of 10)	18555.0	NM_001168288	223666.0	Mm.322931	NM_198420	ENSMUSG00000033697	Arhgap39	9530053N22|AI843066|D15Wsu169e|Kiaa1688|Porf-2	Rho GTPase activating protein 39	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-62429856-4	chr4	62429762	62429962	+	973.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153504, intron 2 of 2)	intron (NM_153504, intron 2 of 2)	4864.0	NM_153504	76072.0	Mm.169565	NM_153504	ENSMUSG00000063851	Rnf183	5830442J12Rik	ring finger protein 183	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-12992469-4	chr17	12992365	12992565	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175394)	promoter-TSS (NM_175394)	74.0	NM_175394	60532.0	Mm.275521	NM_175394	ENSMUSG00000060475	Wtap	2810408K05Rik|9430038B09Rik	Wilms tumour 1-associating protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-79614380-2	chr11	79614280	79614480	+	569.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_003283, intron 2 of 2)	L1MEf|LINE|L1	8783.0	NR_003283	790912.0	Mm.447313	NR_003283	ENSMUSG00000087434	Rab11fip4os1	Gm11202	RAB11 family interacting protein 4 (class II), opposite strand 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-66768928-3	chr4	66768824	66769024	+	899.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58627.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-141090744-2	chr3	141090644	141090844	+	691.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	121611.0	NM_008811	18598.0	Mm.4223	NM_008811	ENSMUSG00000047674	Pdha2	Pdhal	pyruvate dehydrogenase E1 alpha 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-26401913-3	chr12	26401809	26402009	+	643.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080563, intron 1 of 8)	intron (NM_080563, intron 1 of 8)	13101.0	NR_105856	102466676.0		NR_105856	ENSMUSG00000098771	Mir6538	Gm27439|mmu-mir-6538	microRNA 6538	ncRNA	0.366301908034336	-0.0116443444052111	-0.0177107501154636	-0.022409071092828	0.375266788978507	-0.0102803792587298	0.880475163416866	-0.0215871261515732	1.99788204963403	0.370611233262634	1
Merged-chr17-47222160-2	chr17	47222060	47222260	+	719.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001097623, intron 3 of 19)	intron (NM_001097623, intron 3 of 19)	-8070.0	NM_172622	224829.0	Mm.260989	NM_172622		Trerf1	9430096I18Rik|AI429294|B830015H24|RAPA|Trep-132|Trep132	transcriptional regulating factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-144692228-4	chr3	144692104	144692304	+	946.224976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001282037, intron 9 of 10)	intron (NM_001282037, intron 9 of 10)	28131.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28780311-3	chr7	28780216	28780416	+	984.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022432, intron 8 of 15)	intron (NM_022432, intron 8 of 15)	1198.0	NR_040339	100503790.0	Mm.446894	NR_040339		Gm19897	-	predicted gene, 19897	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-38956147-3	chr2	38956071	38956271	+	777.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172854, intron 6 of 7)	intron (NM_172854, intron 6 of 7)	24191.0	NM_172854	241327.0	Mm.103491	NM_172854	ENSMUSG00000046618	Olfml2a	4932431K08Rik|mFLJ00237	olfactomedin-like 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124030625-2	chr5	124030525	124030725	+	872.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_177876, intron 1 of 3)	intron (NM_177876, intron 1 of 3)	1635.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	-0.248633067155466	-0.378692663359122	-0.382828064683364	-0.386015748188451	0.332525911589534	-0.0176026789348733	-0.381916337324846	-0.385459048134307	2.77773196711252	0.266293867676114	1
Merged-chr7-19295996-4	chr7	19295900	19296100	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_013648, exon 10 of 10)	3' UTR (NM_013648, exon 10 of 10)	4931.0	NM_001025364	20167.0	Mm.24142	NM_013648	ENSMUSG00000030401	Rtn2	MMS10-P|Ms10p|NSPLI|Nspl1	reticulon 2 (Z-band associated protein)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46151692-6	chr8	46151603	46151803	+	919.5277710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-11948.0	NM_025747	66756.0	Mm.133623	NM_025747	ENSMUSG00000031631	Cfap97	1110068E21Rik|4933411K20Rik|AW049273|Kiaa1430	cilia and flagella associated protein 97	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-12573833-4	chr10	12573732	12573932	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011682, intron 50 of 73)	intron (NM_011682, intron 50 of 73)	287903.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-54475063-1	chr1	54474963	54475163	+	554.0	f1_c57bl6.idr	3' UTR (NM_001163314, exon 27 of 27)	3' UTR (NM_001163314, exon 27 of 27)	-36037.0	NM_001033194	98488.0	Mm.25856	NM_001033194	ENSMUSG00000041303	Gtf3c3	TF3C-gamma|TFIIIC102	general transcription factor IIIC, polypeptide 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-116345365-3	chr6	116345267	116345467	+	778.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302385, intron 2 of 6)	intron (NM_001302385, intron 2 of 6)	7345.0	NM_001302383	71779.0	Mm.27064	NM_027920	ENSMUSG00000025702	March8	1300017E09Rik|MARCH-VIII|Mir	membrane-associated ring finger (C3HC4) 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-21953636-4	chr3	21953542	21953742	+	970.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-123010.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-65644776-4	chr7	65644680	65644880	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172310)	promoter-TSS (NM_172310)	-118.0	NM_172310	272396.0	Mm.35127	NM_172310	ENSMUSG00000030515	Tarsl2	A530046H20Rik	threonyl-tRNA synthetase-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-39413529-4	chr10	39413434	39413634	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122892, intron 2 of 12)	L1MB2|LINE|L1	43735.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126738108-4	chr7	126738016	126738216	+	994.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-21510.0	NM_011952	26417.0	Mm.8385	NM_011952	ENSMUSG00000063065	Mapk3	Erk-1|Erk1|Ert2|Esrk1|Mnk1|Mtap2k|Prkm3|p44|p44erk1|p44mapk	mitogen-activated protein kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-124624032-2	chr2	124623932	124624132	+	551.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291000, intron 1 of 18)	intron (NM_001291000, intron 1 of 18)	13736.0	NM_172537	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-4661446-1	chr13	4661346	4661546	+	547.0	f1_balb.idr	Intergenic	RMER17A|LTR|ERVK	-52282.0	NM_018859	56043.0	Mm.251908	NM_018859	ENSMUSG00000045410	Akr1e1	1810061I10Rik|Akr1e2	aldo-keto reductase family 1, member E1	protein-coding	1.68049034871399	0.692855388772875	0.680832521467085	1.38471263146156	0.974518911859964	1.25791124804874	0.683499602789176	1.16463664274769	-0.65951637829936	0.662625232764701	0.991056031673253
Merged-chr1-77827572-1	chr1	77827472	77827672	+	765.0	f0_balb.idr	Intergenic	Intergenic	-312484.0	NM_007936	13838.0	Mm.400747	NM_007936	ENSMUSG00000026235	Epha4	2900005C20Rik|AI385584|Cek8|Hek8|Sek|Sek1|Tyro1|rb	Eph receptor A4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83658864-2	chr6	83658762	83658962	+	675.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2746.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	0.785717035563653	1.48210992161148	0.63671304792752	0.825461644662583	0.791719036538974	1.49634544180871	0.639550921176202	1.56602999746301	0.86368896244589	0.559271010511229	0.960321604678676
Merged-chr11-96766555-3	chr11	96766399	96766599	+	909.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11056.0	NM_028965	74479.0	Mm.270781	NM_028965	ENSMUSG00000020876	Snx11	4933439F10Rik|A930041K09Rik|AI117694	sorting nexin 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152903322-4	chr1	152903225	152903425	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359257)	promoter-TSS (NM_001359257)	-679.0	NM_001005507	226517.0	Mm.270775	NM_001005507	ENSMUSG00000042772	Smg7	9430023P16Rik|mKIAA0250	Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-76344427-2	chr10	76344327	76344527	+	641.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081419, intron 1 of 37)	RSINE1|SINE|B4	864.0	NM_001081419	64451.0	Mm.33183	NM_001081419	ENSMUSG00000020231	Dip2a	4931420H10Rik|AI426328|Dip2|Kiaa0184-hp|mKIAA0184	disco interacting protein 2 homolog A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-77310415-2	chr5	77310322	77310522	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_153798)	promoter-TSS (NM_153798)	-62.0	NM_153798	231329.0	Mm.273217	NM_153798	ENSMUSG00000029250	Polr2b	Pol2rb|Rpb140|Rpb2	polymerase (RNA) II (DNA directed) polypeptide B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-98026204-4	chr3	98026118	98026318	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010928, intron 1 of 33)	intron (NM_010928, intron 1 of 33)	12680.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127297319-4	chr7	127297215	127297415	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253873, intron 1 of 30)	intron (NM_001253873, intron 1 of 30)	1055.0	NM_001253874	16408.0	Mm.1618	NM_008400	ENSMUSG00000030830	Itgal	(p180)|Cd11a|LFA-1|LFA-1A|Ly-15|Ly-21	integrin alpha L	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78597042-4	chr15	78596951	78597151	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028195)	promoter-TSS (NM_028195)	4.0	NM_028195	72318.0	Mm.32911	NM_028195	ENSMUSG00000018008	Cyth4	2510004M07Rik|5830469K17Rik|AI467541|Pscd4|mFLJ00017	cytohesin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-66151774-6	chr5	66151655	66151855	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291226)	promoter-TSS (NM_001291226)	199.0	NM_001127382	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-32802639-4	chr13	32802494	32802694	+	978.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_030215, exon 1 of 7)	exon (NM_030215, exon 1 of 7)	564.0	NM_030215	78903.0	Mm.286680	NM_030215	ENSMUSG00000021400	Wrnip1	4833444L21Rik|WHIP|Wrnip	Werner helicase interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-60734692-2	chr10	60734592	60734792	+	614.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023596, intron 2 of 5)	intron (NM_023596, intron 2 of 5)	18090.0	NM_023596	71279.0	Mm.284462	NM_023596	ENSMUSG00000020100	Slc29a3	4933435C21Rik|AW987637|Ent3	solute carrier family 29 (nucleoside transporters), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-37186995-2	chr11	37186895	37187095	+	585.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-242754.0	NM_011856	23964.0	Mm.439889	NM_011856	ENSMUSG00000049336	Tenm2	Odz2|Odz3|Ten-2|Ten-m2	teneurin transmembrane protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70615183-4	chr11	70615102	70615302	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145537)	promoter-TSS (NM_001145537)	-692.0	NM_001145537	668433.0	Mm.425687	NM_001145537	ENSMUSG00000087279	4930544D05Rik	-	RIKEN cDNA 4930544D05 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120826368-2	chr8	120826268	120826468	+	709.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	87729.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-98877502-3	chr15	98877409	98877609	+	857.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_026967)	TTS (NM_026967)	3905.0	NM_026967	69159.0	Mm.259708	NM_026967	ENSMUSG00000023755	Rhebl1	1810036J22Rik|Rheb2	Ras homolog enriched in brain like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-122022501-2	chr2	122022405	122022605	+	988.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-6075.0	NM_144545	78655.0	Mm.458184	NM_144545	ENSMUSG00000027236	Eif3j1	1810016I04Rik|2700079K05Rik|AA409117|AA409446|C78575|Eif3j|Eif3j-1|Eif3j-2|Eif3j2|Eif3s1|eIF-3-alpha-A|eIF-3-alpha-B|eIF3-alpha|eIF3-p35|eIF3j-A|eIF3j-B	eukaryotic translation initiation factor 3, subunit J1	protein-coding	2.94332285208762	2.00332839156861	2.87121363302103	2.78906346851006	1.79612542672565	2.66870218810304	3.4066263372993	1.67247266045203	-0.204000902078666	0.81044289251396	0.998431161219273
Merged-chr3-108050682-4	chr3	108050573	108050773	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB1|LINE|L1	-5814.0	NM_001160411	14865.0	Mm.31203	NM_026764	ENSMUSG00000027890	Gstm4	1110004G14Rik|GSTM7-7|Gstb-4|Gstb4	glutathione S-transferase, mu 4	protein-coding	1.38984012856636	2.11483151796253	2.03820672800141	2.24525694863458	1.88587024853881	1.7336571636221	1.07802661747541	1.05853945207587	-1.43833727448603	0.211296394079559	0.700323931057359
Merged-chr17-15380808-3	chr17	15380702	15380902	+	832.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-4979.0	NM_007865	13388.0	Mm.4875	NM_007865	ENSMUSG00000014773	Dll1	Delta1	delta like canonical Notch ligand 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-27175725-4	chr8	27175628	27175828	+	996.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1082.0	NM_001080813	75767.0	Mm.205335	NM_029423	ENSMUSG00000031488	Rab11fip1	2010200K21Rik|4833414G05Rik|Rcp	RAB11 family interacting protein 1 (class I)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-48913074-3	chr7	48912966	48913166	+	785.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CAAAA)n|Simple_repeat|Simple_repeat	-31470.0	NM_001360812	108961.0	Mm.240566	NM_001013368	ENSMUSG00000046179	E2f8	4432406C08Rik|AA410048	E2F transcription factor 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-7041178-4	chr10	7041094	7041294	+	863.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18009.0	NM_001033391	320495.0	Mm.331674	NM_001033391	ENSMUSG00000064065	Ipcef1	A130090K04Rik	interaction protein for cytohesin exchange factors 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-119028864-4	chr10	119028703	119028903	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_152787, exon 4 of 4)	non-coding (NR_152787, exon 4 of 4)	21696.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-88636640-2	chr5	88636540	88636740	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359208, intron 11 of 13)	B2_Mm2|SINE|B2	38940.0	NM_001098476	231413.0	Mm.332474	NM_178700	ENSMUSG00000044221	Grsf1	BB232551|C80280|D5Wsu31e	G-rich RNA sequence binding factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-82974162-4	chr11	82974094	82974294	+	916.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR26B_MM|LTR|ERVK	10871.0	NR_106144	102466846.0		NR_106144	ENSMUSG00000098840	Mir7679	Gm27908|mmu-mir-7679	microRNA 7679	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-7774767-4	chr9	7774660	7774860	+	997.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133739, intron 2 of 4)	intron (NM_133739, intron 2 of 4)	-9630.0	NR_049191	100885830.0		NR_049191	ENSMUSG00000093615	Mir5618	Gm23685|mmu-mir-5618	microRNA 5618	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81305875-2	chr10	81305775	81305975	+	581.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001293647, intron 4 of 17)	intron (NM_001293647, intron 4 of 17)	12912.0	NM_001146687	18717.0	Mm.24222	NM_008844	ENSMUSG00000034902	Pip5k1c	AI115456|AI835305|Pip5kIgamma	phosphatidylinositol-4-phosphate 5-kinase, type 1 gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-25196594-4	chr8	25196515	25196715	+	897.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177089, intron 2 of 12)	intron (NM_177089, intron 2 of 12)	4927.0	NM_199323	320165.0	Mm.308452	NM_177089	ENSMUSG00000065954	Tacc1	4833447E04Rik|AA960202|B230378H13Rik	transforming, acidic coiled-coil containing protein 1	protein-coding	0.340980402516745	0.213314269234694	0.892400917954338	0.201394643034284	0.780887314670154	0.727582267791966	0.208078474223631	0.202304051498374	0.363309622626376	0.853500060028126	1
Merged-chr11-84613239-3	chr11	84613136	84613336	+	751.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	87576.0	NR_038057	78365.0	Mm.260345	NR_038057	ENSMUSG00000087211	Lhx1os	1500016L03Rik|Lhx1as	LIM homeobox 1, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118493810-4	chr11	118493699	118493899	+	744.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039168, intron 14 of 14)	intron (NM_001039168, intron 14 of 14)	16967.0	NM_001359368	217364.0	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26948646-5	chr17	26948541	26948741	+	833.716675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_037244)	promoter-TSS (NR_037244)	-522.0	NR_037244	100526534.0		NR_037244	ENSMUSG00000093118	Mir3083	mir-3083|mmu-mir-3083	microRNA 3083	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-88280265-4	chr7	88280195	88280395	+	875.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009982, intron 1 of 6)	intron (NM_009982, intron 1 of 6)	2210.0	NM_001311790	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-76151319-2	chr14	76151219	76151419	+	569.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	40428.0	NM_013745	27275.0	Mm.21138	NM_013745	ENSMUSG00000022009	Nufip1	Nufip	nuclear fragile X mental retardation protein interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-87025178-2	chr11	87025078	87025278	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-31416.0	NM_001005341	77864.0	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-130694326-2	chr3	130694226	130694426	+	682.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15118.0	NM_025509	66357.0	Mm.300697	NM_025509	ENSMUSG00000041084	Ostc	2310008M10Rik|5730557H03Rik	oligosaccharyltransferase complex subunit (non-catalytic)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-123951845-4	chr4	123951746	123951946	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34413.0	NM_017475	54170.0	Mm.220922	NM_017475	ENSMUSG00000028646	Rragc	AU041672|Gtr2|RAGC|TIB929|YGR163W	Ras-related GTP binding C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-109000528-4	chr4	109000427	109000627	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347169)	promoter-TSS (NM_001347169)	-128.0	NM_001346554	230598.0	Mm.274950	NM_146150	ENSMUSG00000053510	Nrd1	2600011I06Rik|AI875733|NRD-C|Nrdc	nardilysin, N-arginine dibasic convertase, NRD convertase 1	protein-coding	6.44962202678426	6.68865616240369	6.79779492136363	6.75020783371699	6.17791859843244	5.8475414861598	6.40014898441558	7.05071631037921	-0.246933203565224	0.308683163551873	0.809295017856989
Merged-chr19-42612879-1	chr19	42612779	42612979	+	546.0	f1_c57bl6.idr	promoter-TSS (NM_053083)	promoter-TSS (NM_053083)	-73.0	NM_053083	67573.0	Mm.178767	NM_053083	ENSMUSG00000025185	Loxl4	4833426I20Rik|Loxc	lysyl oxidase-like 4	protein-coding	1.67294918879973	0.940687188809296	2.54540144248802	0.89679260029981	1.43228101376277	1.63129649900991	2.2690608669191	0.900249580359539	-0.163076429187333	0.900348843776054	0.998431161219273
Merged-chr17-55878522-2	chr17	55878422	55878622	+	931.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_144546, intron 1 of 3)	L1MC|LINE|L1	431.0	NM_144546	104349.0	Mm.460659	NM_144546	ENSMUSG00000057835	Zfp119a	AL024077|Mzf13|Zfp119	zinc finger protein 119a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-62217840-3	chr11	62217736	62217936	+	755.194458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029936, intron 12 of 12)	intron (NM_001029936, intron 12 of 12)	-31148.0	NM_007413	11541.0	Mm.40740	NM_007413	ENSMUSG00000018500	Adora2b	A2BAR|A2BR|A2b|AA2BR|AI480866|AI605384	adenosine A2b receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-102517236-4	chr4	102517201	102517401	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019840, intron 5 of 14)	intron (NM_019840, intron 5 of 14)	-52759.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-101147678-2	chr4	101147578	101147778	+	648.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_183024, intron 11 of 11)	PB1D9|SINE|Alu	78640.0	NM_183024	242570.0	Mm.185636	NM_183024	ENSMUSG00000035275	Raver2	A430091O22Rik	ribonucleoprotein, PTB-binding 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-60600408-2	chr18	60600308	60600508	+	739.75	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001109975, exon 2 of 2)	3' UTR (NM_001109975, exon 2 of 2)	-8692.0	NM_133363	170947.0	Mm.159257	NM_133363	ENSMUSG00000049173	Myoz3	4833419K08Rik|Fatz-3	myozenin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127512409-4	chr7	127512308	127512508	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_024331, exon 1 of 1)	non-coding (NR_024331, exon 1 of 1)	425.0	NM_001304266	100043597.0	Mm.428042	NM_175144	ENSMUSG00000053877	Srcap	B930091H02Rik|D030022P06Rik|F630004O05Rik	Snf2-related CREBBP activator protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-45658213-4	chr14	45658125	45658325	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039106)	promoter-TSS (NM_001039106)	-82.0	NM_001042719	114874.0	Mm.121918	NM_176845	ENSMUSG00000037697	Ddhd1	Mir5131|PA-PLA1	DDHD domain containing 1	protein-coding	5.7611969281707	4.8301367391507	5.50279696241428	6.01747039582815	5.09100839619204	3.55257574128133	5.05920613035342	5.02832184772488	-0.906685951653934	0.0159784765223794	0.151756258254647
Merged-chr17-34761615-4	chr17	34761517	34761717	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ETnERV2-int|LTR|ERVK	-17720.0	NM_009780	12268.0	Mm.477109	NM_009780	ENSMUSG00000073418	C4b	C4|Ss	complement component 4B (Chido blood group)	protein-coding	3.29314759801599	3.75805634074006	3.63600342307955	3.96971756251411	2.72011931856951	2.64414344009187	1.64336835492299	3.25918680919185	-1.62461633603595	0.0129978732007252	0.131122603135343
Merged-chr2-52741858-2	chr2	52741758	52741958	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019667, intron 1 of 13)	intron (NM_019667, intron 1 of 13)	291.0	NM_019667	56324.0	Mm.263639	NM_019667	ENSMUSG00000055371	Stam2	1200004O12Rik|5730456G07Rik|BB145015|Hbp	signal transducing adaptor molecule (SH3 domain and ITAM motif) 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-105556966-2	chr5	105556866	105557066	+	653.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133897, intron 2 of 3)	MIR|SINE|MIR	37495.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-75244995-3	chr18	75244803	75245003	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027727, intron 16 of 16)	ORR1F|LTR|ERVL-MaLR	52414.0	NR_045394	100503117.0	Mm.250517	NR_045393	ENSMUSG00000102047	2010010A06Rik	5033420E22Rik	RIKEN cDNA 2010010A06 gene	ncRNA	2.78362398191981	3.24736025030931	3.33119441360989	2.82188114922093	3.79120237408122	3.271346724571	3.97713858604311	3.41951095080576	0.940595074033643	0.0970248442937751	0.483967883246971
Merged-chr15-83098983-2	chr15	83098883	83099083	+	585.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-1222.0	NM_023475	68607.0	Mm.30056	NM_023475	ENSMUSG00000058586	Serhl	0610008B10Rik|1110019M09Rik|AU019786	serine hydrolase-like	protein-coding	-0.499940950918087	-0.487518524828365	0.0891561271406926	-0.494726023626598	-0.499164980458282	-0.486601867615524	0.100277611126392	-0.494177430718284	0.0410194320726077	0.98816738256539	1
Merged-chr5-121602067-4	chr5	121601960	121602160	+	773.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178799, intron 8 of 10)	intron (NM_178799, intron 8 of 10)	-8236.0	NM_001308450	11669.0	Mm.284446	NM_009656	ENSMUSG00000029455	Aldh2	AHD-M1|ALDH-E2|ALDHI|Ahd-5|Ahd5	aldehyde dehydrogenase 2, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-125410356-2	chr5	125410256	125410456	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20339.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81620436-4	chr10	81620336	81620536	+	961.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6886.0	NM_001163430	50721.0	Mm.25643	NM_181586	ENSMUSG00000034748	Sirt6	2810449N18Rik|AI043036|Sir2l6	sirtuin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116611412-2	chr11	116611312	116611512	+	727.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172572, intron 1 of 18)	CT-rich|Low_complexity|Low_complexity	12840.0	NM_001167680	217344.0	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-21129772-4	chr5	21129684	21129884	+	894.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46495.0	NR_153366	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120552593-2	chr8	120552493	120552693	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145896, intron 1 of 15)	intron (NM_001145896, intron 1 of 15)	13897.0	NR_106159	102466849.0		NR_106159	ENSMUSG00000098280	Mir7687	Gm27573|mmu-mir-7687	microRNA 7687	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-4038805-6	chr12	4038691	4038891	+	831.361084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001082483, exon 1 of 23)	5' UTR (NM_001082483, exon 1 of 23)	124.0	NM_001082483	668212.0	Mm.210266	NM_001082483	ENSMUSG00000020658	Efr3b	AI852640|C030014M07Rik|mKIAA0953	EFR3 homolog B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-32739287-1	chr5	32739187	32739387	+	781.333313	f1_balb.idr	exon (NM_177298, exon 4 of 8)	exon (NM_177298, exon 4 of 8)	7055.0	NM_001347332	320951.0	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85992643-4	chr12	85992547	85992747	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347395, intron 29 of 32)	intron (NM_001347395, intron 29 of 32)	86394.0	NM_009368	21809.0	Mm.3992	NM_009368	ENSMUSG00000021253	Tgfb3	TGF-beta-3|Tgfb-3	transforming growth factor, beta 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-91074313-2	chr1	91074213	91074413	+	728.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008515, intron 3 of 22)	intron (NM_008515, intron 3 of 22)	20869.0	NM_001310732	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124857909-2	chr6	124857809	124858009	+	897.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013534)	promoter-TSS (NM_013534)	-222.0	NM_013534	14789.0	Mm.35708	NM_013534	ENSMUSG00000023191	P3h3	BC016431|Grcb|Leprel2	prolyl 3-hydroxylase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-36857739-4	chr3	36857663	36857863	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-5343.0	NM_172679	229227.0	Mm.207907	NM_172679	ENSMUSG00000037270	4932438A13Rik	4732443H21|B830039D19Rik|D630029K19Rik|FSA|Kiaa1109|Tweek	RIKEN cDNA 4932438A13 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-84622294-4	chr10	84622212	84622412	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027423)	promoter-TSS (NM_027423)	-125.0	NM_027423	70428.0	Mm.335007	NM_027423	ENSMUSG00000034453	Polr3b	2700078H01Rik|A330032P03Rik|C85372|RPC2	polymerase (RNA) III (DNA directed) polypeptide B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52578544-9	chr13	52578261	52578461	+	941.6296390000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-5076.0	NM_001198977	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99980866-2	chr7	99980766	99980966	+	794.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175388)	promoter-TSS (NM_175388)	-408.0	NM_175388	108937.0	Mm.323087	NM_175388	ENSMUSG00000058761	Rnf169	2900057K09Rik	ring finger protein 169	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-34000860-4	chr16	34000762	34000962	+	897.3250119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177357, intron 51 of 59)	intron (NM_177357, intron 51 of 59)	-33824.0	NM_009471	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-82780250-2	chr11	82780150	82780350	+	642.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291247)	promoter-TSS (NM_001291247)	792.0	NR_126068	100503272.0	Mm.486964	NR_126067	ENSMUSG00000085175	Gm11423	-	predicted gene 11423	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129064707-1	chr4	129064607	129064807	+	575.0	f0_c57.idr	intron (NM_029219, intron 1 of 8)	B1F|SINE|Alu	6436.0	NM_029219	75234.0	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-21067340-4	chr10	21067234	21067434	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177776, intron 4 of 6)	intron (NM_001177776, intron 4 of 6)	26514.0	NM_001177776	52906.0	Mm.253280	NM_026203	ENSMUSG00000019986	Ahi1	1700015F03Rik|Ahi-1|D10Bwg0629e	Abelson helper integration site 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59037824-4	chr15	59037720	59037920	+	948.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144800, intron 3 of 14)	intron (NM_144800, intron 3 of 14)	44206.0	NM_001146180	211401.0	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-30595573-4	chr3	30595483	30595683	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	4287.0	NM_029690	76652.0	Mm.116928	NM_029690	ENSMUSG00000037737	Actrt3	1700119I24Rik|ARP-T3|Arpm1	actin related protein T3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100670882-2	chr11	100670782	100670982	+	827.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20189.0	NM_177790	278304.0	Mm.274734	NM_177790	ENSMUSG00000014198	Zfp385c	A930006D11Rik|Znf385c	zinc finger protein 385C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-36184273-3	chr8	36184161	36184361	+	920.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28251.0	NR_151736	330738.0	Mm.128075	NR_151736	ENSMUSG00000109704	Gm38414	A230084N10|Gm45568	predicted gene, 38414	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-87960218-4	chr10	87960069	87960269	+	910.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6502.0	NR_000040	22172.0	Mm.391420	NR_000040		Tyms-ps	-	thymidylate synthase, pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-29903631-3	chr16	29903535	29903735	+	952.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	75489.0	NR_037689	328657.0	Mm.425982	NM_001033403		Gm1968	-	predicted gene 1968	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-7464635-1	chr17	7464535	7464735	+	802.0	f1_c57bl6.idr	Intergenic	Intergenic	-79330.0	NM_001142539	667055.0	Mm.327371	NM_001142539	ENSMUSG00000056133	Gm9992	-	predicted gene 9992	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-52750049-7	chr18	52749969	52750169	+	964.5714109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17742.0	NM_026408	67847.0	Mm.292168	NM_026408	ENSMUSG00000024534	Sncaip	2810407O15Rik|4933427B05Rik|BB104594|SYPH1	synuclein, alpha interacting protein (synphilin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-89270680-3	chr4	89270591	89270791	+	766.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	11501.0	NM_001040654	12578.0	Mm.4733	NM_009877	ENSMUSG00000044303	Cdkn2a	ARF-INK4a|Arf|INK4a-ARF|Ink4a/Arf|MTS1|Pctr1|p16|p16(INK4a)|p16INK4a|p19<ARF>|p19ARF	cyclin dependent kinase inhibitor 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152766550-4	chr1	152766437	152766637	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346119)	promoter-TSS (NM_001346119)	-5.0	NM_026369	67771.0	Mm.288974	NM_026369	ENSMUSG00000008475	Arpc5	5830443F10Rik|p16-Arc	actin related protein 2/3 complex, subunit 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-23742264-2	chr17	23742164	23742364	+	746.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_028416, exon 9 of 10)	exon (NM_028416, exon 9 of 10)	-1934.0	NM_023824	76498.0	Mm.491253	NM_023824	ENSMUSG00000023909	Paqr4	1500004C10Rik	progestin and adipoQ receptor family member IV	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-13829233-2	chr9	13829133	13829333	+	672.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_176836, intron 2 of 9)	intron (NM_176836, intron 2 of 9)	1517.0	NM_176836	72826.0	Mm.246174	NM_176836	ENSMUSG00000037808	Fam76b	2810485I05Rik|C78303	family with sequence similarity 76, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-61907057-4	chr9	61906875	61907075	+	837.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7535.0	NM_018853	56040.0	Mm.3158	NM_018853	ENSMUSG00000007892	Rplp1	2410042H16Rik|Arpp1|C430017H15Rik	ribosomal protein, large, P1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-94144206-4	chr13	94144110	94144310	+	894.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172589, intron 2 of 3)	intron (NM_172589, intron 2 of 3)	86414.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-21855518-2	chr1	21855418	21855618	+	723.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023872, intron 1 of 13)	intron (NM_023872, intron 1 of 13)	106424.0	NM_001160139	226922.0	Mm.336519	NM_023872	ENSMUSG00000028033	Kcnq5	7730402H11|9230107O05Rik|AA589396|D1Mgi1	potassium voltage-gated channel, subfamily Q, member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-57062337-2	chr17	57062237	57062437	+	912.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001347408, exon 1 of 5)	5' UTR (NM_001347408, exon 1 of 5)	106.0	NM_177638	224912.0	Mm.284447	NM_177638	ENSMUSG00000044279	Crb3	5730439B18|AU015179|AU041752	crumbs family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-116094306-3	chr7	116094214	116094414	+	630.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019772, intron 1 of 4)	intron (NM_019772, intron 1 of 4)	934.0	NM_019772	56372.0	Mm.24231	NM_019772	ENSMUSG00000030663	1110004F10Rik	Smacp|Smap|sid2057|sid2057p	RIKEN cDNA 1110004F10 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-21916043-2	chr16	21915943	21916143	+	973.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172821, intron 9 of 12)	Lx8|LINE|L1	24074.0	NM_172821	71751.0	Mm.420837	NM_172821	ENSMUSG00000033618	Map3k13	C130026N12Rik|LZK	mitogen-activated protein kinase kinase kinase 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-72532278-2	chr14	72532178	72532378	+	886.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	177725.0	NM_207636	319448.0	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152797490-4	chr1	152797388	152797588	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2665.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150488918-3	chr4	150488814	150489014	+	868.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 7 of 22)	intron (NM_001085492, intron 7 of 22)	163260.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	-2.18233058068552	-2.15536956715525	-2.16352280018114	-2.04193253143548	-2.18043796738662	-2.15360272754651	-2.16167708693786	-2.16902129354933	-0.683654500252594	0.846597994014493	1
Merged-chr8-72161133-4	chr8	72161015	72161215	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023126)	promoter-TSS (NM_023126)	-85.0	NM_023126	17274.0	Mm.162811	NM_023126	ENSMUSG00000003037	Rab8a	AA409338|Mel	RAB8A, member RAS oncogene family	protein-coding	7.22014820210102	7.02032690259841	7.5747021191304	6.76235039056873	7.01123359910933	7.20729934051914	7.55557758181778	6.86671251636834	0.00577131508463499	0.977347337793389	0.998431161219273
Merged-chr11-46774848-4	chr11	46774750	46774950	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166631, intron 6 of 7)	intron (NM_001166631, intron 6 of 7)	23682.0	NM_134248	171283.0	Mm.17771	NM_134248	ENSMUSG00000040405	Havcr1	AI503787|KIM-1|TIM-1|Tim1|Timd1	hepatitis A virus cellular receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-80206833-5	chr18	80206840	80207040	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178604)	promoter-TSS (NM_178604)	73.0	NM_001042408	27366.0	Mm.172411	NM_025299	ENSMUSG00000057130	Txnl4a	D18Wsu98e|Dim1|Txnl4|U5-15kD|U5-15kDa	thioredoxin-like 4A	protein-coding	5.49061938371482	5.39985080940714	5.60259413534651	5.54641398228741	5.48436667410828	5.77344709589346	5.94790199963169	6.06837287086955	0.359782274534003	0.161435552841465	0.622327384549716
Merged-chr9-105389498-2	chr9	105389411	105389611	+	562.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172461, intron 2 of 15)	intron (NM_172461, intron 2 of 15)	5776.0	NM_172461	208583.0	Mm.347509	NM_172461	ENSMUSG00000035032	Nek11	4932416N14Rik	NIMA (never in mitosis gene a)-related expressed kinase 11	protein-coding	0.643895254709766	1.49680379308533	1.19304139592268	0.660184534645393	0.967756538000104	1.39068914498889	1.44744084628483	0.661877726476978	0.411804120187025	0.787155364748786	0.998431161219273
Merged-chr12-71002408-2	chr12	71002308	71002508	+	707.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045055, intron 3 of 3)	intron (NR_045055, intron 3 of 3)	13415.0	NR_045056	73204.0	Mm.363770	NR_045055	ENSMUSG00000085622	3110056K07Rik	4921536K06Rik	RIKEN cDNA 3110056K07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-94373344-2	chr11	94373244	94373444	+	709.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029600, intron 6 of 30)	intron (NM_029600, intron 6 of 30)	19632.0	NM_029600	76408.0	Mm.23942	NM_029600	ENSMUSG00000020865	Abcc3	1700019L09Rik|ABC31|MLP2|MOAT-D|MRP3	ATP-binding cassette, sub-family C (CFTR/MRP), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-8483137-1	chr8	8483037	8483237	+	558.5	f0_balb.idr	Intergenic	Intergenic	177636.0	NM_010111	13642.0	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-120601652-4	chr9	120601538	120601738	+	834.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24307.0	NR_073359	76100.0	Mm.48212	NR_073359	ENSMUSG00000052658	5830454E08Rik	-	RIKEN cDNA 5830454E08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95673892-4	chr3	95673732	95673932	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14085.0	NM_144899	229595.0	Mm.490574	NM_144899	ENSMUSG00000015850	Adamtsl4	ADAMTSL-4|Tsrc1	ADAMTS-like 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-59805784-4	chr4	59805684	59805884	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_172468, exon 1 of 9)	5' UTR (NM_172468, exon 1 of 9)	134.0	NM_172468	209131.0	Mm.259705	NM_172468	ENSMUSG00000028385	Snx30	4732481H14Rik|C030041J06Rik	sorting nexin family member 30	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-63905962-2	chr7	63905862	63906062	+	614.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021366, intron 1 of 1)	L1MC3|LINE|L1	-10895.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-58631243-2	chr9	58631143	58631343	+	690.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357751, intron 4 of 8)	B4A|SINE|B4	49003.0	NM_001357751	20320.0	Mm.15125	NM_009145	ENSMUSG00000032336	Nptn	AW554172|SDR-1|Sdfr1	neuroplastin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-120172199-4	chr14	120172013	120172213	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-103556.0	NM_207515	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-123803788-3	chr8	123803682	123803882	+	574.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-2214.0	NM_009003	19341.0	Mm.9221	NM_009003	ENSMUSG00000019478	Rab4a	AI848268|Rab4	RAB4A, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-95712827-4	chr11	95712744	95712944	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045780)	promoter-TSS (NR_045780)	-90.0	NR_045780	432396.0	Mm.426849	NR_045780	ENSMUSG00000086191	Zfp652os	1110035M17Rik	zinc finger protein 652, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-10901151-4	chr8	10901017	10901217	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_102285, intron 2 of 2)	intron (NR_102285, intron 2 of 2)	1195.0	NR_102285	71624.0	Mm.139075	NR_102285	ENSMUSG00000109089	4833411C07Rik	-	RIKEN cDNA 4833411C07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-67855835-1	chr8	67855735	67855935	+	771.0	f0_balb.idr	intron (NM_177698, intron 8 of 14)	intron (NM_177698, intron 8 of 14)	-37540.0	NM_027626	234353.0	Mm.32525	NM_027626	ENSMUSG00000030465	Psd3	4931420C21Rik|AI661273|BC003498|D430018P08|EFA6D	pleckstrin and Sec7 domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132608414-4	chr4	132608311	132608511	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30635.0	NM_210071	14050.0	Mm.227733	NM_010166	ENSMUSG00000028886	Eya3	AI844637	EYA transcriptional coactivator and phosphatase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36261413-2	chr1	36261313	36261513	+	813.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA6|LINE|L1	12012.0	NM_153408	214854.0	Mm.389110	NM_153408	ENSMUSG00000047180	Neurl3	2010300P06Rik|Lincr	neuralized E3 ubiquitin protein ligase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10689096-4	chr19	10689010	10689210	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361958, intron 1 of 4)	CpG	375.0	NM_001361959	107305.0	Mm.19091	NM_181403	ENSMUSG00000048832	Vps37c	5730409F24Rik|AU042646	vacuolar protein sorting 37C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53107056-2	chr4	53106956	53107156	+	564.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_013454, exon 7 of 50)	exon (NM_013454, exon 7 of 50)	52839.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16932143-4	chr7	16932106	16932306	+	794.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8174.0	NM_007590	12315.0	Mm.288630	NM_007590	ENSMUSG00000019370	Calm3	CaMA|Cam3|Camc|R75142	calmodulin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-108577997-4	chr4	108577847	108578047	+	849.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172697, intron 1 of 9)	B1_Mur1|SINE|Alu	1389.0	NM_172697	230596.0	Mm.157534	NM_172697	ENSMUSG00000063800	Prpf38a	2410002M20Rik	PRP38 pre-mRNA processing factor 38 (yeast) domain containing A	protein-coding	2.22914491463299	1.96859024397888	1.13841397137542	1.70303019408679	2.68839952859518	1.8290066708728	1.14426427543249	1.97866923720435	0.555681111583346	0.618013345251068	0.977534379898354
Merged-chr7-19499510-2	chr7	19499410	19499610	+	548.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C|LTR|ERVK	8821.0	NM_177692	232946.0	Mm.64557	NM_177692	ENSMUSG00000057667	Bloc1s3	BC043666|Blos3|E230011O18|rp	biogenesis of lysosomal organelles complex-1, subunit 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71064793-2	chr17	71064693	71064893	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083934, intron 12 of 36)	intron (NM_001083934, intron 12 of 36)	45236.0	NM_001083934	17929.0	Mm.4103	NM_010867	ENSMUSG00000024049	Myom1	D430047A17Rik	myomesin 1	protein-coding	-2.18308165884198	-2.15547475440471	-2.16382331017202	-2.1706810624505	-2.18114370519566	-2.15366558754311	-2.03057248461154	-2.16945352807143	0.759018020146679	0.829933115115583	1
Merged-chr16-30022665-1	chr16	30022565	30022765	+	1000.0	f1_balb.idr	intron (NR_045878, intron 3 of 3)	intron (NR_045878, intron 3 of 3)	13998.0	NR_033631	100043102.0	Mm.30797	NR_033631	ENSMUSG00000097184	4632428C04Rik	Gm4231	RIKEN cDNA 4632428C04 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135907624-3	chr5	135907598	135907798	+	978.4285890000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_018871)	TTS (NM_018871)	19779.0	NM_013560	15507.0	Mm.13849	NM_013560	ENSMUSG00000004951	Hspb1	27kDa|Hsp25	heat shock protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-34533213-4	chr5	34533110	34533310	+	851.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011893, intron 1 of 12)	intron (NM_011893, intron 1 of 12)	7426.0	NM_011893	24055.0	Mm.5012	NM_011893	ENSMUSG00000054520	Sh3bp2	3BP2	SH3-domain binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-182528720-4	chr1	182528611	182528811	+	908.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-11101.0	NM_009794	12334.0	Mm.19306	NM_009794	ENSMUSG00000026509	Capn2	AI326419|CALP80|Capa-2|Capa2|m-calpain|m-calpin	calpain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-144333241-2	chr2	144333141	144333341	+	642.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1161.0	NM_026924	107586.0	Mm.252750	NM_026924	ENSMUSG00000037279	Ovol2	1700108N11Rik|1810007D21Rik|M-OVO|M-OVO-A|M-OVO-B|MOVO|Ovo2|Zfp339|movo2	ovo like zinc finger 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-34525541-2	chr19	34525441	34525641	+	799.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_021460, intron 1 of 9)	intron (NM_021460, intron 1 of 9)	1933.0	NM_001111100	16889.0	Mm.157545	NM_021460	ENSMUSG00000024781	Lipa	AA960673|Lal|Lip-1|Lip1	lysosomal acid lipase A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-66300982-2	chr7	66300882	66301082	+	599.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146191, intron 11 of 33)	intron (NM_146191, intron 11 of 33)	80742.0	NR_106024	102465640.0		NR_106024	ENSMUSG00000098353	Mir7057	Gm27550|mmu-mir-7057	microRNA 7057	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-18351053-2	chr16	18350953	18351153	+	706.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_033474, intron 1 of 18)	intron (NM_033474, intron 1 of 18)	2871.0	NM_001272029	11877.0	Mm.293599	NM_033474	ENSMUSG00000000325	Arvcf	-	armadillo repeat gene deleted in velocardiofacial syndrome	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-165763734-4	chr1	165763635	165763835	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011804)	promoter-TSS (NM_011804)	-23.0	NR_149310	433375.0	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-11494153-2	chr2	11494053	11494253	+	760.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177758, intron 1 of 14)	ID_B1|SINE|B4	7937.0	NM_001177754	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-85925578-3	chr11	85925477	85925677	+	754.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28812.0	NM_172798	21387.0	Mm.275336	NM_011536	ENSMUSG00000000094	Tbx4	3930401C23	T-box 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-142403033-2	chr7	142402933	142403133	+	793.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28|LTR|ERVL	-15163.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	0.143236912037881	-0.118652641914795	0.749173317780756	-0.128363683912667	0.264654720481403	-0.117420599051798	-0.122919007906547	-0.12762299904115	-1.79610641376373	0.436862036506488	1
Merged-chr8-119860408-2	chr8	119860308	119860508	+	686.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-1897.0	NM_146219	234796.0	Mm.86446	NM_146219	ENSMUSG00000031828	Klhl36	-	kelch-like 36	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-85523819-3	chr11	85523713	85523913	+	802.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138681, intron 16 of 25)	intron (NM_138681, intron 16 of 25)	170649.0	NM_001166643	192197.0	Mm.209989	NM_138681	ENSMUSG00000059439	Bcas3	1500019F07Rik|2610028P08Rik|AU021018|BC028339|K20D4|rudhira	breast carcinoma amplified sequence 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-70791044-2	chr6	70790944	70791144	+	598.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009075, intron 1 of 8)	intron (NM_009075, intron 1 of 8)	1131.0	NM_009075	19895.0	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-96345327-4	chr16	96345177	96345377	+	938.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16480.0	NM_001177887	72058.0	Mm.119714	NM_028078	ENSMUSG00000000159	Igsf5	2010003D20Rik|JCAM|Jam4	immunoglobulin superfamily, member 5	protein-coding	1.81570120412122	1.86915081620427	1.12731809654182	1.2292739389818	0.768085396767688	0.798351033393413	0.788479662218273	0.780072656011812	-5.07904261524116	0.00110403802822342	0.0210257908930548
Merged-chr8-26701210-1	chr8	26701110	26701310	+	798.0	f1_balb.idr	Intergenic	Intergenic	123213.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	2.16856169755721	0.760079792580957	0.999821440427527	1.34092928324509	1.10916176773492	0.765007094145385	2.47601815714061	0.722913766304196	0.211302333466364	0.880408927438928	0.998431161219273
Merged-chr4-59152062-2	chr4	59151852	59152052	+	805.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37598.0	NM_011673	22234.0	Mm.198803	NM_011673	ENSMUSG00000028381	Ugcg	AU043821|C80537|Epcs21|GlcT-1|Ugcgl	UDP-glucose ceramide glucosyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-40069498-3	chr10	40069364	40069564	+	928.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 3 of 5)	intron (NM_001114332, intron 3 of 5)	-44196.0	NM_144821	215929.0	Mm.55513	NM_144821	ENSMUSG00000038522	Mfsd4b1	AI317395|AI482555|Naglt1a	major facilitator superfamily domain containing 4B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-86723707-3	chr4	86723549	86723749	+	923.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-24906.0	NM_184088	329877.0	Mm.273718	NM_184088	ENSMUSG00000038024	Dennd4c	1700065A05Rik|AA420392	DENN/MADD domain containing 4C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-9498280-2	chr18	9498180	9498380	+	612.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48126.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-105164928-4	chr14	105164839	105165039	+	953.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134077, intron 1 of 20)	MTEa|LTR|ERVL-MaLR	12388.0	NM_134077	74213.0	Mm.474531	NM_134077	ENSMUSG00000022119	Rbm26	1700009P03Rik|AI447318|C230097K14Rik|C86225|MLZ-393|Pro1777|Se70-2	RNA binding motif protein 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-30689506-3	chr16	30689415	30689615	+	953.244446	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	89792.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	2.87020599248939	4.09743834378923	2.78564757651582	3.04012784889385	1.04894369108061	1.55227749861122	1.48695188548347	1.12140731091759	-5.02037125216287	2.19421542775105e-05	0.000873656970204329
Merged-chr7-55909229-2	chr7	55909130	55909330	+	714.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011370, intron 22 of 30)	L1MC4a|LINE|L1	53263.0	NM_001256133	93790.0	Mm.37249	NM_023647	ENSMUSG00000030452	Nipa2	2600017P10Rik|3830408P04Rik|AB041581	non imprinted in Prader-Willi/Angelman syndrome 2 homolog (human)	protein-coding	1.94250934063327	2.48139700501175	2.26005976485856	3.17085234648481	2.22834021460766	3.03109905676658	1.93760567763418	2.56939012207402	-0.0991990630463974	0.904222241408017	0.998431161219273
Merged-chr1-43811960-4	chr1	43811868	43812068	+	994.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026430, intron 1 of 14)	ORR1D2|LTR|ERVL-MaLR	15740.0	NM_026430	67883.0	Mm.387202	NM_026430	ENSMUSG00000057363	Uxs1	1600025I13Rik|AI451869|AI649125|AW550562	UDP-glucuronate decarboxylase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81366939-2	chr10	81366839	81367039	+	743.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_019757)	TTS (NM_019757)	-1119.0	NM_001014836	432479.0	Mm.440450	NM_001014836	ENSMUSG00000020234	4930404N11Rik	2210409H10Rik|5730551K18Rik|AI854616	RIKEN cDNA 4930404N11 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44082775-4	chr9	44082692	44082892	+	775.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198092, intron 2 of 12)	RMER15|LTR|ERVL	-2128.0	NM_198091	53376.0	Mm.272770	NM_016808	ENSMUSG00000032010	Usp2	B930035K21Rik|Ubp41	ubiquitin specific peptidase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36739991-4	chr18	36739889	36740089	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028036, intron 9 of 11)	intron (NM_028036, intron 9 of 11)	4598.0	NM_010885	17991.0	Mm.29867	NM_010885	ENSMUSG00000014294	Ndufa2	AV000592|B8|C1-B8|CI-B8	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-79368090-2	chr2	79367990	79368190	+	793.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001048176, intron 3 of 12)	intron (NM_001048176, intron 3 of 12)	60898.0	NM_001048176	228094.0	Mm.440704	NM_001033295	ENSMUSG00000075256	Cerkl	Gm1958|Rp26	ceramide kinase-like	protein-coding	0.02259608976649	0.0398849687916601	0.798609963643653	0.457756151582172	0.297946416626632	0.239358378099631	0.0354755611298861	0.0306216528299305	-1.66601265215339	0.427628807194019	1
Merged-chr17-56756976-2	chr17	56756876	56757076	+	870.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008738, intron 1 of 2)	CpG	572.0	NM_008738	18188.0	Mm.8074	NM_008738	ENSMUSG00000039481	Nrtn	NTN	neurturin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-99093763-2	chr11	99093663	99093863	+	728.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4457.0	NM_172564	217169.0	Mm.262067	NM_172564	ENSMUSG00000017607	Tns4	9930017A07Rik|AA589547|AU016405|Cten	tensin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-43276640-3	chr5	43276542	43276742	+	712.138916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177379, intron 5 of 10)	intron (NM_001177379, intron 5 of 10)	-41288.0	NR_028417	665934.0	Mm.381491	NR_028417	ENSMUSG00000085720	Gm7854	EG665934	predicted gene 7854	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-106697678-4	chr1	106697517	106697717	+	875.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009741, intron 1 of 1)	intron (NM_009741, intron 1 of 1)	16673.0	NM_009741	12043.0	Mm.257460	NM_009741	ENSMUSG00000057329	Bcl2	AW986256|Bcl-2|C430015F12Rik|D630044D05Rik|D830018M01Rik	B cell leukemia/lymphoma 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-88746358-2	chr15	88746271	88746471	+	567.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-5340.0	NM_181412	223773.0	Mm.396622	NM_181412	ENSMUSG00000034333	Zbed4	1700009F06Rik	zinc finger, BED type containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-154964280-7	chr4	154964182	154964382	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172990, intron 1 of 18)	CpG	159.0	NR_131230	269614.0	Mm.30042	NM_172990	ENSMUSG00000029056	Pank4	D030031I12Rik|R75150	pantothenate kinase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-103970666-3	chr8	103970566	103970766	+	930.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-130959.0	NM_009868	12562.0	Mm.21767	NM_009868	ENSMUSG00000031871	Cdh5	7B4|AA408225|Cd144|VE-Cad|VECD|VEcad|Vec	cadherin 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-74283958-2	chr1	74283858	74284058	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001190444, exon 2 of 11)	exon (NM_001190444, exon 2 of 11)	780.0	NM_001190444	227290.0	Mm.379371	NM_146110	ENSMUSG00000006299	Aamp	AU040907|Aamp-rs	angio-associated migratory protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-14188084-3	chr9	14187881	14188081	+	692.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-88320.0	NM_030261	75747.0	Mm.325126	NM_030261	ENSMUSG00000032009	Sesn3	5630400E15Rik|BC003348|SEST3	sestrin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-5311514-2	chr9	5311414	5311614	+	957.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_007609, intron 1 of 8)	RLTR17|LTR|ERVK	2665.0	NM_007609	12363.0	Mm.1569	NM_007609	ENSMUSG00000033538	Casp4	CASP-11|CASP-4|Casp11|Caspl|ich-3	caspase 4, apoptosis-related cysteine peptidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-156195728-2	chr4	156195621	156195821	+	671.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_021604, intron 1 of 35)	intron (NM_021604, intron 1 of 35)	1767.0	NM_021604	11603.0	Mm.273098	NM_021604	ENSMUSG00000041936	Agrn	Agrin|nmf380	agrin	protein-coding	-1.06932346315282	-1.04545378193536	-0.220844647149311	-1.06494782147003	-1.06867040657128	-1.04264807175102	-1.05547001227371	-1.06448932552894	-3.08190232315036	0.346744811462451	1
Merged-chr15-42835006-3	chr15	42834900	42835100	+	738.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-158023.0	NM_009640	11600.0	Mm.309336	NM_009640	ENSMUSG00000022309	Angpt1	1110046O21Rik|Ang-1|Ang1	angiopoietin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-47531387-3	chr19	47531274	47531474	+	991.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175360, intron 2 of 9)	intron (NM_175360, intron 2 of 9)	5745.0	NM_175360	108689.0	Mm.218048	NM_175360	ENSMUSG00000042694	Stn1	0610009H20Rik|2310057J23Rik|AAF-44|AAF44|AI413458|Obfc1|RPA-32	STN1, CST complex subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-105363065-4	chr11	105362959	105363159	+	973.1416630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172568, intron 11 of 11)	CpG	70413.0	NM_008626	17534.0	Mm.235616	NM_008626	ENSMUSG00000020695	Mrc2	Endo180|mKIAA0709|uPARAP	mannose receptor, C type 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-37562152-4	chr1	37562043	37562243	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21127.0	NM_173870	269181.0	Mm.25861	NM_173870	ENSMUSG00000026110	Mgat4a	9530018I07Rik|GnT-IVa|glcNAc-T-IVa	mannoside acetylglucosaminyltransferase 4, isoenzyme A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-46012724-4	chr9	46012600	46012800	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027498)	promoter-TSS (NM_027498)	-10.0	NM_001357241	18475.0	Mm.200859	NM_008775	ENSMUSG00000003131	Pafah1b2	2610005M20Rik|AI747451|AU021353|Pafahb|mus[b]	platelet-activating factor acetylhydrolase, isoform 1b, subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-149793371-4	chr4	149793263	149793463	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19096.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	4.80208229873045	5.25087781347207	5.09322578763711	5.42988668984923	5.40098069053203	5.16746228834799	5.36787500312796	6.15378157727178	0.487666141170712	0.122978532843701	0.549737867756604
Merged-chr16-10972612-1	chr16	10972512	10972712	+	579.0	f0_balb.idr	intron (NM_019980, intron 1 of 3)	intron (NM_019980, intron 1 of 3)	20509.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-77845114-2	chr18	77845014	77845214	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013831, intron 2 of 14)	intron (NM_013831, intron 2 of 14)	-48724.0	NR_152167	619308.0	Mm.490456	NM_001033812		F830208F22Rik	-	RIKEN cDNA F830208F22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-59694236-1	chr10	59694136	59694336	+	546.0	f1_c57bl6.idr	Intergenic	Intergenic	-8327.0	NM_001359267	216001.0	Mm.27199	NM_144822	ENSMUSG00000020111	Micu1	C730016L05Rik|Calc|Cbara1	mitochondrial calcium uptake 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6285973-2	chr19	6285873	6286073	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010119, intron 2 of 4)	intron (NM_010119, intron 2 of 4)	9077.0	NM_010119	13660.0	Mm.30169	NM_010119	ENSMUSG00000024772	Ehd1	AA409636|Past1|RME-1	EH-domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-34973513-2	chr5	34973413	34973613	+	816.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173402, intron 2 of 16)	L1MB3|LINE|L1	24065.0	NM_173402	71729.0	Mm.196208	NM_173402	ENSMUSG00000029101	Rgs12	1200016K18Rik|4632412M04Rik|AI481290|E130309H11	regulator of G-protein signaling 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-11001350-4	chr8	11001238	11001438	+	932.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081212, intron 1 of 1)	intron (NM_001081212, intron 1 of 1)	-6512.0	NR_046017	619321.0	Mm.403007	NR_046017	ENSMUSG00000096938	9530052E02Rik	-	RIKEN cDNA 9530052E02 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-62883027-1	chr17	62882927	62883127	+	621.0	f0_balb.idr	Intergenic	Intergenic	-1710.0	NM_010109	13640.0	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90458257-2	chr2	90458157	90458357	+	913.833374	f1_balb.idr|f1_c57bl6.idr	exon (NM_001135657, exon 10 of 26)	exon (NM_001135657, exon 10 of 26)	20917.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-73055049-2	chr2	73054949	73055149	+	993.1999509999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74603.0	NM_001018042	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-103752955-4	chr5	103752870	103753070	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Charlie1a|DNA|hAT-Charlie	-1192.0	NM_133919	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-128739131-2	chr7	128739031	128739231	+	921.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145955, intron 1 of 15)	intron (NM_145955, intron 1 of 15)	1298.0	NM_145955	210711.0	Mm.58882	NM_145955	ENSMUSG00000048170	Mcmbp	1110007A13Rik|AU017382|BC025641|MCM-BP	minichromosome maintenance complex binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-42503605-2	chr10	42503505	42503705	+	803.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_017472, intron 1 of 3)	B1_Mus2|SINE|Alu	1551.0	NM_017472	54198.0	Mm.277870	NM_017472	ENSMUSG00000019804	Snx3	SDP3	sorting nexin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-22108739-3	chr19	22108627	22108827	+	715.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30390.0	NM_001035239	226025.0	Mm.131943	NM_177341	ENSMUSG00000052387	Trpm3	6330504P12Rik|9330180E14|AU018608|B930001P07Rik|LTRPC3|MLSN2	transient receptor potential cation channel, subfamily M, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-66107071-4	chr17	66106992	66107192	+	897.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4454.0	NM_026833	68767.0	Mm.296545	NM_026833	ENSMUSG00000024101	Washc1	1110049F14Rik|ORF19|Wash|Wash1	WASH complex subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-86898227-2	chr12	86898127	86898327	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13413.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125082004-4	chr6	125081891	125082091	+	820.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001163269, exon 2 of 2)	exon (NM_001163269, exon 2 of 2)	10714.0	NM_001163268	381810.0	Mm.333386	NM_001163268	ENSMUSG00000067714	Lpar5	GPR93|Gm1072|Gpr92|LPA5	lysophosphatidic acid receptor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-22747156-4	chr10	22747052	22747252	+	913.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15705.0	NM_011603	237336.0	Mm.86670	NM_011603	ENSMUSG00000071359	Tbpl1	4732475G08|AW011832|AW491032|D18347|STD|TLF|TRF2|TRP|Tlp	TATA box binding protein-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153402591-2	chr2	153402491	153402691	+	729.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001039939, exon 12 of 12)	3' UTR (NM_001039939, exon 12 of 12)	41888.0	NM_001001986	329540.0	Mm.50600	NM_001001986	ENSMUSG00000061411	Nol4l	4931410H15|8430427H17Rik|AI429157|Gm1636	nucleolar protein 4-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-4800811-1	chr8	4800711	4800911	+	940.0	f1_balb.idr	Intergenic	Intergenic	-21244.0	NM_011369	20419.0	Mm.37801	NM_011369	ENSMUSG00000022322	Shcbp1	mPAL	Shc SH2-domain binding protein 1	protein-coding	1.31381111189896	0.722997362945108	0.71142542602208	1.17647361813385	1.2290640668891	1.52422745658468	1.35110039918369	0.703979154991579	0.954405354615055	0.52255706978967	0.947836760490745
Merged-chr16-91835243-2	chr16	91835143	91835343	+	828.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110275, intron 16 of 28)	(CA)n|Simple_repeat|Simple_repeat	96387.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-152009778-4	chr4	152009733	152009933	+	993.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001033352, exon 1 of 4)	exon (NM_001033352, exon 1 of 4)	942.0	NM_001033352	242785.0	Mm.22306	NM_001033352	ENSMUSG00000073700	Klhl21	1810045K06Rik|D330008A20|mKIAA0469	kelch-like 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-138195700-4	chr5	138195600	138195800	+	976.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_177878)	TTS (NM_177878)	1386.0	NM_177878	330216.0	Mm.19719	NM_177878	ENSMUSG00000049285	Mblac1	-	metallo-beta-lactamase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-144248183-2	chr2	144248083	144248283	+	721.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	18019.0	NR_030762	100313519.0	Mm.453538	NR_030762	ENSMUSG00000077714	Snord17	MBI-43	small nucleolar RNA, C/D box 17	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-53616110-4	chr10	53616032	53616232	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027830, intron 5 of 13)	intron (NM_027830, intron 5 of 13)	14307.0	NM_027830	71567.0	Mm.278221	NM_027830	ENSMUSG00000058298	Mcm9	9030408O17Rik|Gm235|Mcmdc1	minichromosome maintenance 9 homologous recombination repair factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-54681777-4	chr3	54681659	54681859	+	992.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-11056.0	NR_152185	56790.0	Mm.486375	NM_019995	ENSMUSG00000027751	Supt20	AA667204|AI450544|D3Ertd300e|Fam48a|Supt20h|p38IP	suppressor of Ty 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-34551124-2	chr19	34551024	34551224	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355262)	promoter-TSS (NM_001355262)	36.0	NM_001355262	15958.0	Mm.2036	NM_008332	ENSMUSG00000045932	Ifit2	AV302338|Ifi54|P54	interferon-induced protein with tetratricopeptide repeats 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-32785713-4	chr5	32785608	32785808	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177298)	promoter-TSS (NM_177298)	-82.0	NM_177298	320951.0	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	5.59939391120512	5.87314352340059	5.34380500827845	5.8829883086992	5.46597633730188	5.88349964388851	5.86511989749035	5.74005879599977	0.0584239443590879	0.820752298184217	0.998431161219273
Merged-chr8-120634566-4	chr8	120634422	120634622	+	921.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_197988)	promoter-TSS (NM_197988)	-140.0	NM_197988	68918.0	Mm.473736	NM_197988	ENSMUSG00000043687	1190005I06Rik	-	RIKEN cDNA 1190005I06 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-157493391-2	chr2	157493291	157493491	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66687.0	NM_001291129	18111.0	Mm.34330	NM_010923	ENSMUSG00000067786	Nnat	5730414I02Rik|AW107673|Peg5	neuronatin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99387122-2	chr15	99387022	99387222	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E-int|LTR|ERVL-MaLR	-5825.0	NM_026669	110213.0	Mm.16769	NM_026669	ENSMUSG00000023010	Tmbim6	5031406P05Rik|Bi1|Tegt	transmembrane BAX inhibitor motif containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-106246492-2	chr9	106246394	106246594	+	671.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_020559, intron 2 of 10)	intron (NM_020559, intron 2 of 10)	1236.0	NM_001291835	11655.0	Mm.290578	NM_020559	ENSMUSG00000032786	Alas1	ALAS|ALAS-N|Alas-1|Alas-h	aminolevulinic acid synthase 1	protein-coding	0.836850174621114	1.37125297165426	0.881806419738176	2.23262613330215	0.841170208330872	1.56031858897168	2.08756294259517	1.71243648951203	0.410743310416356	0.762050772138049	0.998431161219273
Merged-chr6-134263075-4	chr6	134262957	134263157	+	886.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007961, exon 7 of 8)	exon (NM_007961, exon 7 of 8)	-133272.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56754781-4	chr17	56754700	56754900	+	795.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008738, intron 1 of 2)	intron (NM_008738, intron 1 of 2)	2748.0	NM_008738	18188.0	Mm.8074	NM_008738	ENSMUSG00000039481	Nrtn	NTN	neurturin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-141241370-4	chr5	141241258	141241458	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177879)	promoter-TSS (NM_177879)	-176.0	NM_177879	330222.0	Mm.151931	NM_177879	ENSMUSG00000039683	Sdk1	5330440E10|6720466O15Rik	sidekick cell adhesion molecule 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-66909429-1	chr9	66909329	66909529	+	643.0	f0_balb.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	10276.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-54690864-2	chr6	54690764	54690964	+	586.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289741, intron 2 of 4)	intron (NM_001289741, intron 2 of 4)	9240.0	NM_001289740	68235.0	Mm.233860	NM_026629	ENSMUSG00000038065	Mturn	2410066E13Rik|AI448550|B230212L03Rik	maturin, neural progenitor differentiation regulator homolog (Xenopus)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-95789723-4	chr15	95789611	95789811	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1132.0	NM_175344	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-64960849-4	chr9	64960750	64960950	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175153)	promoter-TSS (NM_175153)	18.0	NM_001077631	69882.0	Mm.272616	NM_175153	ENSMUSG00000034263	Ints14	2010321M09Rik|Vwa9	integrator complex subunit 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34153082-4	chr17	34152959	34153159	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010387)	promoter-TSS (NM_010387)	-132.0	NM_010387	14999.0	Mm.460938	NM_010387	ENSMUSG00000079547	H2-DMb1	AI385589|H-2Mb1|H2-Mb1	histocompatibility 2, class II, locus Mb1	protein-coding	6.17468362507828	6.54103246790869	5.68907555972704	5.07483141751148	5.46795935951334	5.72737593265822	6.6895941394876	4.63607381349727	-0.165424774604816	0.769395962481035	0.998431161219273
Merged-chr14-70647312-2	chr14	70647214	70647414	+	774.666626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_181345)	TTS (NM_181345)	-5046.0	NM_008004	14171.0	Mm.12814	NM_008004	ENSMUSG00000022101	Fgf17	-	fibroblast growth factor 17	protein-coding	-1.84371485578039	-1.81332821174849	-1.82251738371298	-1.83006564316449	-1.84158176955426	-1.81133687985023	-1.5312619047181	-1.82871450833159	1.60090129203521	0.64914985597185	1
Merged-chr14-54383943-1	chr14	54383843	54384043	+	841.0	f0_balb.idr	intron (NM_011405, intron 4 of 11)	B4A|SINE|B4	23102.0	NM_026936	69089.0	Mm.182340	NM_026936	ENSMUSG00000000959	Oxa1l	1810020M02Rik|AI894287	oxidase assembly 1-like	protein-coding	-0.923772569202306	-0.562996481634052	-0.918041984271448	-0.920200216076014	-0.447857768560961	-0.907094860507239	-0.917424159035726	-0.919823515043604	0.61021457578152	0.845890823634888	1
Merged-chr16-68074033-2	chr16	68073933	68074133	+	853.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTRIS2|LTR|ERV1	-453125.0	NM_178721	239857.0	Mm.394300	NM_178721	ENSMUSG00000064115	Cadm2	2900078E11Rik|9330131D06|A830029E02Rik|Igdf4d|Igsf4d|NECL3|SynCAM 2|SynCAM2	cell adhesion molecule 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26576990-4	chr17	26576896	26577096	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026170, intron 1 of 9)	MIRc|SINE|MIR	15484.0	NM_026170	67458.0	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-50202460-2	chr11	50202360	50202560	+	675.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_011018, exon 7 of 8)	exon (NM_011018, exon 7 of 8)	8360.0	NM_001290769	18412.0	Mm.40828	NM_011018	ENSMUSG00000015837	Sqstm1	A170|OSF-6|Osi|STAP|STONE14|p62	sequestosome 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45360946-2	chr7	45360846	45361046	+	552.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029741, intron 2 of 29)	intron (NM_029741, intron 2 of 29)	-5215.0	NR_015480	50994.0	Mm.389897	NM_016664	ENSMUSG00000091510	Mtag2	MAG	metastasis associated gene 2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-92205457-1	chr5	92205357	92205557	+	604.0	f0_balb.idr	Intergenic	Intergenic	9951.0	NR_033483	57425.0	Mm.2548	NM_020562	ENSMUSG00000029409	U90926	-	cDNA sequence U90926	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-34798534-2	chr2	34798434	34798634	+	708.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145522, intron 1 of 7)	intron (NM_145522, intron 1 of 7)	1378.0	NM_145522	227746.0	Mm.158705	NM_145522	ENSMUSG00000070953	Rabepk	8430412M01Rik|9530020D24Rik|AV073337|C87311|Rab9p40	Rab9 effector protein with kelch motifs	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-58755963-2	chr15	58755863	58756063	+	748.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	C-rich|Low_complexity|Low_complexity	67464.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33916179-2	chr16	33916079	33916279	+	988.785706	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 9 of 14)	intron (NM_001145884, intron 9 of 14)	50859.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120101184-4	chr11	120101040	120101240	+	825.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001110242)	TTS (NM_001110242)	2206.0	NM_001110242	208501.0	Mm.46699	NM_001110242	ENSMUSG00000078572	Ndufaf8	1810043H04Rik	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex assembly factor 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-136111599-2	chr1	136111499	136111699	+	785.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081023, intron 35 of 43)	ORR1G|LTR|ERVL-MaLR	19584.0	NR_046170	329253.0	Mm.487858	NR_046167	ENSMUSG00000086264	Gm15850	6530439I21	predicted gene 15850	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70697834-2	chr8	70697734	70697934	+	758.099976	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010592)	promoter-TSS (NM_010592)	95.0	NM_001286944	16478.0	Mm.419851	NM_010592	ENSMUSG00000071076	Jund	Jund1	jun D proto-oncogene	protein-coding	-0.768073096085151	-1.110218439389	-1.12089137361577	-0.833128841020431	-1.13168813266638	-1.10790557001884	-1.11847525525089	-1.12808913895361	-2.53565945346057	0.435894434332211	1
Merged-chr9-96331420-1	chr9	96331320	96331520	+	547.0	f1_c57bl6.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	32295.0	NM_001357213	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	0.371806997997341	0.00655704179779371	0.680910722674849	-0.00351970010759259	-0.00973834215671582	0.00783700404864485	0.589688922061311	-0.00275186847533468	-0.835603334056007	0.709141458395009	1
Merged-chr2-3323907-2	chr2	3323807	3324007	+	878.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008708, intron 11 of 13)	Charlie1|DNA|hAT-Charlie	8721.0	NM_001013376	227522.0	Mm.293948	NM_001013376	ENSMUSG00000049950	Rpp38	C330006A15Rik	ribonuclease P/MRP 38 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167342190-2	chr2	167342090	167342290	+	919.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019835, intron 1 of 8)	intron (NM_019835, intron 1 of 8)	6988.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84270469-4	chr8	84270353	84270553	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001294281)	promoter-TSS (NM_001294281)	-51.0	NM_026350	67736.0	Mm.30095	NM_026350	ENSMUSG00000004994	Ccdc130	4930527D15Rik|C77430	coiled-coil domain containing 130	protein-coding	-1.31349849087795	-1.28274354783242	-1.29349452597086	-1.3023256995151	-1.3130151546297	-1.28041376602105	-0.694015972326031	-1.30074492367298	2.57396649482007	0.456321314346772	1
Merged-chr10-75473643-4	chr10	75473542	75473742	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24132.0	NR_045841	71125.0	Mm.399516	NR_045841		4933407G14Rik	-	RIKEN cDNA 4933407G14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-148045465-2	chr2	148045365	148045565	+	737.833374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291067)	promoter-TSS (NM_001291067)	-1.0	NM_001291067	15376.0	Mm.938	NM_010446	ENSMUSG00000037025	Foxa2	HNF3-beta|HNF3beta|Hnf-3b|Hnf3b|Tcf-3b|Tcf3b	forkhead box A2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10059962-2	chr19	10059862	10060062	+	980.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_021890)	TTS (NM_021890)	18414.0	NM_021890	60527.0	Mm.253875	NM_021890	ENSMUSG00000024664	Fads3	AI464531	fatty acid desaturase 3	protein-coding	-1.8418762459921	-1.8125357239735	-1.82140854000656	-1.82869693527674	-1.56059678980999	-1.8106129477253	-1.81939992894326	-1.82739231600805	1.3620893379502	0.699511506488145	1
Merged-chr4-125066109-2	chr4	125066009	125066209	+	850.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175223)	promoter-TSS (NM_175223)	-452.0	NM_175223	75563.0	Mm.50304	NM_175223	ENSMUSG00000042707	Dnali1	1700023A09Rik|AW049135	dynein, axonemal, light intermediate polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-101766476-4	chr5	101766370	101766570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173370, intron 1 of 12)	intron (NM_173370, intron 1 of 12)	1340.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127630068-3	chr7	127629952	127630152	+	741.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14780.0	NR_155451	320683.0	Mm.156718	NM_177226	ENSMUSG00000045639	Zfp629	9330199A09Rik|Znf629	zinc finger protein 629	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-47934593-3	chr1	47934596	47934796	+	837.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-467571.0	NR_105768	102466969.0		NR_105768	ENSMUSG00000098876	Mir6350	Gm27958|mmu-mir-6350	microRNA 6350	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-33484773-4	chr6	33484657	33484857	+	922.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009148, intron 9 of 17)	intron (NM_009148, intron 9 of 17)	235629.0	NM_001347089	20336.0	Mm.265512	NM_009148	ENSMUSG00000029763	Exoc4	C78892|Sec8|Sec8l1	exocyst complex component 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-96850436-2	chr11	96850336	96850536	+	819.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029562)	promoter-TSS (NR_029562)	43.0	NR_029562	387170.0		NR_029562	ENSMUSG00000065515	Mir152	Mirn152|mir-152|mmu-mir-152	microRNA 152	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-41587149-2	chr3	41587053	41587253	+	801.974976	f0_balb.idr|f0_c57.idr	intron (NM_001130184, intron 2 of 10)	intron (NM_001130184, intron 2 of 10)	22273.0	NM_001130186	269424.0	Mm.286285	NM_172303	ENSMUSG00000025764	Jade1	AU041499|D530048A03Rik|Phf17|mKIAA1807	jade family PHD finger 1	protein-coding	1.187706931034	1.13464174370581	0.566036374516727	0.557255435789096	0.989301135889733	1.60403384490572	0.777058868192584	0.5587969939786	0.660784866854057	0.676748280914403	0.99440487726309
Merged-chr15-98634892-4	chr15	98634804	98635004	+	805.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001286226, exon 1 of 12)	5' UTR (NM_001286226, exon 1 of 12)	137.0	NM_001286226	12297.0	Mm.3544	NM_007581	ENSMUSG00000003352	Cacnb3	Beta3|CAB3|Ca(v)beta3|Cchb3	calcium channel, voltage-dependent, beta 3 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-22021709-4	chr3	22021625	22021825	+	921.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54927.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-122819889-4	chr6	122819803	122820003	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021899)	promoter-TSS (NM_021899)	-281.0	NM_021899	60611.0	Mm.87142	NM_021899	ENSMUSG00000003154	Foxj2	Fhx	forkhead box J2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-43880767-4	chr5	43880664	43880864	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007646, intron 1 of 7)	intron (NM_007646, intron 1 of 7)	11955.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47780356-2	chr17	47780256	47780456	+	581.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161723, intron 1 of 8)	intron (NM_001161723, intron 1 of 8)	-5388.0	NM_011549	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-49973706-3	chr6	49973606	49973806	+	775.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-136535.0	NM_019939	56524.0	Mm.41288	NM_008016	ENSMUSG00000038388	Mpp6	P55t|Pals2	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21760425-4	chr9	21760351	21760551	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026282)	promoter-TSS (NM_026282)	-148.0	NM_001357331	67629.0	Mm.295642	NM_026282	ENSMUSG00000074476	Spc24	2410030K01Rik|AV109292|Spbc24	SPC24, NDC80 kinetochore complex component, homolog (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94122278-4	chr10	94122176	94122376	+	960.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053072, intron 9 of 20)	intron (NM_053072, intron 9 of 20)	-25655.0	NM_011629	22025.0	Mm.107483	NM_011629	ENSMUSG00000005897	Nr2c1	4831444H07Rik|80.3|Eenr|TR2|Tr2-11	nuclear receptor subfamily 2, group C, member 1	protein-coding	1.09024098130708	1.48546601356363	0.697100526454235	1.27195477142441	1.47187872493315	0.925062390839394	0.897687564545824	0.690056762535607	-0.556845478157232	0.701817348434397	0.998431161219273
Merged-chr14-30525622-1	chr14	30525522	30525722	+	542.0	f1_c57bl6.idr	3' UTR (NM_133761, exon 10 of 10)	3' UTR (NM_133761, exon 10 of 10)	-23509.0	NM_009388	21881.0	Mm.290692	NM_009388	ENSMUSG00000021957	Tkt	p68	transketolase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-40763814-2	chr9	40763704	40763904	+	554.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133733, intron 2 of 6)	MER31A|LTR|ERV1	-37469.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	0.479142740993587	1.14533997439989	0.974205884478302	0.490422816502724	0.480827483045305	1.03033660615508	0.984416880882588	0.816128373841256	0.175339496212019	0.916185174759028	1
Merged-chr15-86169884-4	chr15	86169800	86170000	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145475, intron 1 of 12)	intron (NM_145475, intron 1 of 12)	-15828.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91646884-2	chr2	91646784	91646984	+	568.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347175, intron 4 of 4)	B3|SINE|B2	2907.0	NM_001347175	381410.0	Mm.330401	NM_001033451	ENSMUSG00000075040	Zfp408	Gm1011	zinc finger protein 408	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-32401595-2	chr4	32401495	32401695	+	714.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15840.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117717754-4	chr10	117717658	117717858	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7000.0	NM_001288586	17246.0	Mm.22670	NM_010786	ENSMUSG00000020184	Mdm2	1700007J15Rik|AA415488|Mdm-2	transformed mouse 3T3 cell double minute 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-79097563-2	chr12	79097463	79097663	+	709.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_110486, intron 2 of 2)	intron (NR_110486, intron 2 of 2)	6376.0	NR_110486	321017.0	Mm.311575	NR_110486	ENSMUSG00000112489	9230116L04Rik	-	RIKEN cDNA 9230116L04 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-145208148-2	chr5	145208048	145208248	+	647.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359192, intron 2 of 3)	intron (NM_001359192, intron 2 of 3)	3589.0	NM_001359188	22757.0	Mm.332842	NM_016683	ENSMUSG00000055991	Zkscan5	AI132486|AI326970|Zfp95|hKraba1	zinc finger with KRAB and SCAN domains 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153082193-2	chr2	153082127	153082327	+	615.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_145536)	TTS (NM_145536)	16272.0	NM_145536	228788.0	Mm.299979	NM_145536	ENSMUSG00000027474	Ccm2l	-	cerebral cavernous malformation 2-like	protein-coding	2.84445910438047	2.07572972581624	2.41500634522985	2.0989211784688	2.13203404316536	2.25219760924028	2.97090129537171	1.34010044520148	-0.20010732026793	0.827271909916793	0.998431161219273
Merged-chr3-41742545-4	chr3	41742449	41742649	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291048)	promoter-TSS (NM_001291048)	-35.0	NM_001081411	67161.0	Mm.331001	NM_001081411	ENSMUSG00000059834	Sclt1	2610207F23Rik|4931421F20Rik|CAGGS-SB10|Tg(ACTB-sb10)1Dla|Tg(CAG-sb10)1Dla	sodium channel and clathrin linker 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-63611156-4	chr9	63611028	63611228	+	762.325012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151671, intron 1 of 9)	intron (NR_151671, intron 1 of 9)	8482.0	NR_151671	66939.0	Mm.34338	NM_025857	ENSMUSG00000037257	Aagab	2310007F21Rik|p34	alpha- and gamma-adaptin binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-90303492-2	chr7	90303392	90303592	+	732.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001040085, intron 1 of 18)	intron (NM_001040085, intron 1 of 18)	1137.0	NR_110348	83671.0	Mm.26751	NM_031394	ENSMUSG00000030616	Sytl2	AI266830|Slp2|mKIAA1597	synaptotagmin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-85491798-2	chr16	85491698	85491898	+	832.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144853, intron 2 of 3)	intron (NM_144853, intron 2 of 3)	58575.0	NM_144853	224405.0	Mm.213203	NM_144853	ENSMUSG00000041134	Cyyr1	-	cysteine and tyrosine-rich protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-44791354-2	chr2	44791254	44791454	+	635.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172662, intron 3 of 10)	intron (NM_172662, intron 3 of 10)	70268.0	NM_172662	227835.0	Mm.314312	NM_172662	ENSMUSG00000036890	Gtdc1	E330008O22Rik	glycosyltransferase-like domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-176814200-4	chr1	176814103	176814303	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029756)	promoter-TSS (NM_029756)	-457.0	NR_151682	76816.0	Mm.171399	NM_029756	ENSMUSG00000026504	Sdccag8	2700048G21Rik|5730470G24Rik|Cccap	serologically defined colon cancer antigen 8	protein-coding	1.22258181280477	2.20911391994406	3.19682060068455	2.4321177911894	2.58497446834343	2.05975154091294	2.5263595135696	1.53702326581224	-0.453487453129595	0.640383603207581	0.982599433509505
Merged-chr3-27987860-2	chr3	27987760	27987960	+	882.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008875, intron 1 of 25)	intron (NM_008875, intron 1 of 25)	3689.0	NM_008875	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-60780520-2	chr11	60780420	60780620	+	769.666626	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_175491, exon 1 of 1)	3' UTR (NM_175491, exon 1 of 1)	2995.0	NM_175491	237782.0	Mm.57726	NM_175491	ENSMUSG00000049323	Smcr8	2310076G09Rik|AI642055|D030073L15Rik	Smith-Magenis syndrome chromosome region, candidate 8 homolog (human)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-90830580-4	chr16	90830516	90830716	+	892.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_133572)	promoter-TSS (NR_133572)	-243.0	NR_133572	70967.0	Mm.253077	NM_027627	ENSMUSG00000039903	Eva1c	1700092M14Rik|4931408A02Rik|Fam176c	eva-1 homolog C (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135219815-2	chr4	135219715	135219915	+	811.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_013885, intron 4 of 5)	intron (NM_013885, intron 4 of 5)	52945.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122570569-2	chr8	122570469	122570669	+	551.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026014, intron 6 of 9)	intron (NM_026014, intron 6 of 9)	2554.0	NM_026014	67177.0	Mm.21873	NM_026014	ENSMUSG00000006585	Cdt1	2610318F11Rik|AW545653|C76791|Ris2	chromatin licensing and DNA replication factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139286106-4	chr5	139286025	139286225	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172723, intron 4 of 10)	intron (NM_172723, intron 4 of 10)	32628.0	NM_001163316	67604.0	Mm.270137	NM_026269	ENSMUSG00000025858	Get4	1110007L15Rik|AW412535|Cee	golgi to ER traffic protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-94476823-1	chr3	94476723	94476923	+	568.0	f0_balb.idr	Intergenic	Intergenic	-1472.0	NM_001289616	78784.0	Mm.44292	NM_172434	ENSMUSG00000028137	Celf3	4930415M08Rik|BRUNOL1|CAGH4|ERDA4|ETR-1|Tnrc4	CUGBP, Elav-like family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-119899552-4	chr7	119899446	119899646	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_126475)	promoter-TSS (NR_126475)	-565.0	NR_126475	73919.0	Mm.46381	NM_029610	ENSMUSG00000030922	Lyrm1	1110065L10Rik|2310004B22Rik|4930404J24Rik	LYR motif containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-67038858-4	chr1	67038772	67038972	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021295)	promoter-TSS (NM_021295)	0.0	NM_001190985	14768.0	Mm.20522	NM_021295	ENSMUSG00000026000	Lancl1	AW124738|Gpr69|Gpr69a|p40	LanC (bacterial lantibiotic synthetase component C)-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-21053307-2	chr14	21053207	21053407	+	746.333313	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018829)	promoter-TSS (NM_018829)	733.0	NM_134079	11534.0	Mm.188734	NM_134079	ENSMUSG00000039197	Adk	2310026J05Rik|5033405D03Rik|AI255373|AI987814|Ak	adenosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99379758-2	chr7	99379658	99379858	+	819.125	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1760.0	NM_001362168	233552.0	Mm.286317	NM_201352	ENSMUSG00000035314	Gdpd5	BC024955|Gde2	glycerophosphodiester phosphodiesterase domain containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-5769858-4	chr13	5769745	5769945	+	991.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	88247.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-111645884-2	chr8	111645784	111645984	+	810.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358993, intron 1 of 3)	MLTR25C|LTR|ERVK	2441.0	NM_011742	22640.0	Mm.4184	NM_011742	ENSMUSG00000055835	Zfp1	Fnp-1|Zfp-1|mkr-1	zinc finger protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-110986895-1	chr5	110986795	110986995	+	611.0	f0_balb.idr	intron (NM_001267622, intron 2 of 22)	intron (NM_001267622, intron 2 of 22)	-17249.0	NR_030482	735278.0		NR_030482	ENSMUSG00000076163	Mir701	Mirn701|mir-701|mmu-mir-701	microRNA 701	ncRNA	-2.18138529563533	-2.15523716995652	-2.1631445789866	-2.16963996020037	-2.05513010215571	-2.15352360143315	-2.16135451490766	-2.16847729006863	0.759018020146679	0.829933115115583	1
Merged-chr12-93094933-2	chr12	93094833	93095033	+	711.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	349890.0	NR_126436	75295.0	Mm.243878	NR_126436	ENSMUSG00000113164	4930559C10Rik	-	RIKEN cDNA 4930559C10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-23783543-2	chr10	23783443	23783643	+	786.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	1908.0	NR_037680	100529074.0	Mm.371846	NR_037680	ENSMUSG00000070063	Snora33	ACA33|MBI-42	small nucleolar RNA, H/ACA box 33	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-27088195-2	chr6	27088095	27088295	+	806.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	848555.0	NR_030420	735266.0		NR_030420	ENSMUSG00000076067	Mir592	Mirn592|mir-592|mmu-mir-592	microRNA 592	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122462719-1	chr8	122462619	122462819	+	754.0	f1_c57bl6.idr	Intergenic	Intergenic	-2027.0	NM_013914	30927.0	Mm.103673	NM_013914	ENSMUSG00000006587	Snai3	AI643946|Smuc|Zfp293	snail family zinc finger 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-64921074-4	chr18	64920991	64921191	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114386, intron 1 of 30)	intron (NM_001114386, intron 1 of 30)	33335.0	NM_001114386	83814.0	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-27407575-2	chr16	27407475	27407675	+	574.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289436, intron 4 of 11)	intron (NM_001289436, intron 4 of 11)	18619.0	NM_001289436	67501.0	Mm.258985	NM_026202	ENSMUSG00000038127	Ccdc50	C3orf6	coiled-coil domain containing 50	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-145178736-4	chr5	145178666	145178866	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291249, intron 6 of 7)	intron (NM_001291249, intron 6 of 7)	11553.0	NM_001291248	54188.0	Mm.196884	NM_178576	ENSMUSG00000029625	Cpsf4	30kDa|C79664	cleavage and polyadenylation specific factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-119785933-1	chr8	119785833	119786033	+	547.0	f1_balb.idr	Intergenic	Intergenic	-7517.0	NM_028883	74347.0	Mm.358759	NM_028883	ENSMUSG00000034105	Tldc1	4632415K11Rik|Kiaa1609	TBC/LysM associated domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-55805493-4	chr4	55805406	55805606	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-273031.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-104032708-4	chr13	104032614	104032814	+	906.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029447, intron 12 of 12)	intron (NM_029447, intron 12 of 12)	76900.0	NM_029447	75805.0	Mm.127692	NM_029447	ENSMUSG00000021710	Nln	4930472G13Rik|C79345	neurolysin (metallopeptidase M3 family)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-101841320-2	chr5	101841220	101841420	+	575.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 66 of 66)	L1M2|LINE|L1	76190.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	0.442020502695459	0.0276956057762227	0.0232848166155742	0.167693807449595	0.146146037657604	0.20697085302218	0.445578533932711	0.170351311823487	0.539075350498962	0.778051308912943	1
Merged-chr1-182255227-4	chr1	182255120	182255320	+	896.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26975.0	NM_001360783	13244.0	Mm.29648	NM_007853	ENSMUSG00000038633	Degs1	AA536663|Degs|Des1|Mdes	delta(4)-desaturase, sphingolipid 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44986694-4	chr7	44986599	44986799	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019830)	promoter-TSS (NM_019830)	-201.0	NR_045266	100502630.0	Mm.490013	NR_045266	ENSMUSG00000087138	Gm15545	-	predicted gene 15545	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-117108252-4	chr2	117108111	117108311	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12860.0	NM_001277256	114715.0	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-62646749-1	chr2	62646649	62646849	+	545.0	f1_balb.idr	promoter-TSS (NM_027835)	promoter-TSS (NM_027835)	-494.0	NM_001164477	71586.0	Mm.136224	NM_027835	ENSMUSG00000026896	Ifih1	9130009C22Rik|Helicard|Hlcd|MDA5|RLR-2	interferon induced with helicase C domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-37581094-4	chr13	37581002	37581202	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	235757.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	3.36248230081425	3.75893144895106	3.08839520093881	3.7997205391592	3.2387676465532	3.85845571910398	3.4198787324097	3.48163860227505	-0.0305703193702624	0.95439036798661	0.998431161219273
Merged-chr4-62626588-4	chr4	62626490	62626690	+	837.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019492, intron 14 of 19)	intron (NM_019492, intron 14 of 19)	6918.0	NM_134257	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-91252200-4	chr1	91252098	91252298	+	992.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355764, intron 1 of 10)	intron (NM_001355764, intron 1 of 10)	1632.0	NM_001355764	67921.0	Mm.337238	NM_026454	ENSMUSG00000034343	Ube2f	2510010F15Rik|AI851109	ubiquitin-conjugating enzyme E2F (putative)	protein-coding	1.98267929880544	2.79359825547987	1.99707087100527	3.03880218640525	2.23223369566032	1.67259979965036	2.30116200690805	1.95181706539779	-1.09042507275945	0.212611683244163	0.702047781144169
Merged-chr7-141171586-2	chr7	141171486	141171686	+	558.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001172100, intron 1 of 9)	B1F|SINE|Alu	1265.0	NM_001172100	107702.0	Mm.197493	NM_145135	ENSMUSG00000038650	Rnh1	AW546468|C80305|RNH	ribonuclease/angiogenin inhibitor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-92697734-2	chr1	92697634	92697834	+	558.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48893.0	NM_153114	260301.0	Mm.219545	NM_153114	ENSMUSG00000044055	Otos	OTOSP	otospiralin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-120464672-2	chr6	120464572	120464772	+	650.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008359, intron 1 of 12)	intron (NM_008359, intron 1 of 12)	1475.0	NM_008359	16172.0	Mm.4481	NM_008359	ENSMUSG00000002897	Il17ra	AW538159|Cdw217|Il17r|VDw217	interleukin 17 receptor A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-118277646-4	chr7	118277526	118277726	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33719.0	NR_027879	67745.0	Mm.483404	NM_183267	ENSMUSG00000055159	4930583K01Rik	-	RIKEN cDNA 4930583K01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-47935608-2	chr19	47935508	47935708	+	645.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	-2104.0	NM_001163267	381229.0	Mm.300553	NM_001163267	ENSMUSG00000046585	Cfap58	Ccdc147|Gm969	cilia and flagella associated protein 58	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-49210475-2	chr13	49210375	49210575	+	917.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026738, intron 1 of 5)	L1M4c|LINE|L1	5551.0	NM_026738	68480.0	Mm.3336	NM_026738	ENSMUSG00000037960	Card19	1110007C09Rik|AI851695|Bincard	caspase recruitment domain family, member 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-108489504-2	chr9	108489404	108489604	+	811.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008483, exon 30 of 33)	exon (NM_008483, exon 30 of 33)	-1172.0	NM_001168372	71472.0	Mm.289706	NM_027804	ENSMUSG00000006676	Usp19	8430421I07Rik|AI047774|Zmynd9	ubiquitin specific peptidase 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-47647875-2	chr14	47647754	47647954	+	800.333374	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-1457.0	NM_001347527	16709.0	Mm.3110	NM_008477	ENSMUSG00000021843	Ktn1	-	kinectin 1	protein-coding	2.87868015627467	2.36372494905023	2.93284455515994	2.03984751886213	3.18587327809807	3.24525449991823	3.22287392762796	2.86570148416885	0.974785615172884	0.154033785276623	0.609396797894788
Merged-chr2-23005449-2	chr2	23005349	23005549	+	553.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077190, intron 1 of 10)	MLTR25A|LTR|ERVK	34792.0	NM_001077192	11308.0	Mm.205647	NM_007380	ENSMUSG00000058835	Abi1	E3B1|NAP1|Ssh3bp1|abi-1	abl-interactor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-38336524-2	chr6	38336424	38336624	+	645.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001347122, exon 3 of 13)	exon (NM_001347122, exon 3 of 13)	18079.0	NM_001347122	78781.0	Mm.25243	NM_028421	ENSMUSG00000029826	Zc3hav1	1200014N16Rik|2900058M19Rik|9130009D18Rik|9830115L13Rik|ARTD13|D6Bwg1452e|ZAP	zinc finger CCCH type, antiviral 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-8315474-2	chr12	8315374	8315574	+	698.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021429, intron 1 of 6)	L2a|LINE|L2	2041.0	NM_021429	58240.0	Mm.309954	NM_021429	ENSMUSG00000020605	Hs1bp3	-	HCLS1 binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-62648862-2	chr4	62648762	62648962	+	773.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019492, intron 18 of 19)	intron (NM_019492, intron 18 of 19)	-25112.0	NM_001310706	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-74243019-4	chr1	74242907	74243107	+	877.2374880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357387, intron 2 of 10)	ID_B1|SINE|B4	6490.0	NM_029711	76709.0	Mm.337038	NM_029711	ENSMUSG00000006304	Arpc2	2210023N03Rik|34kDa|p34-Arc	actin related protein 2/3 complex, subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-46815510-3	chr11	46815398	46815598	+	859.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_178759, exon 2 of 9)	exon (NM_178759, exon 2 of 9)	4699.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	-0.493384239383991	-0.481117247289303	0.193375206987826	-0.488236707431993	-0.00453859917135163	-0.480211366170247	-0.484249655208616	-0.487695023010815	-0.644666625916222	0.815643850765914	1
Merged-chr10-17275416-4	chr10	17275315	17275515	+	952.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-179633.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	0.408005422850758	1.08123132315501	1.13348403065402	0.595154939408538	0.567232680702208	0.435922831952237	0.427422773837521	1.09505560442782	-0.915813545543496	0.593882110550528	1
Merged-chr11-44382297-4	chr11	44382200	44382400	+	985.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17763.0	NM_001303244	16160.0	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-86210931-2	chr15	86210831	86211031	+	651.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3528.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-32589357-2	chr6	32589257	32589457	+	593.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1165.0	NM_175750	243743.0	Mm.444029	NM_175750	ENSMUSG00000029765	Plxna4	9330117B14|Plxa4|mKIAA1550	plexin A4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69554898-4	chr11	69554769	69554969	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007911, exon 5 of 5)	3' UTR (NM_007911, exon 5 of 5)	5368.0	NM_007911	13643.0	Mm.249637	NM_007911	ENSMUSG00000003934	Efnb3	EFL-6|ELF-3|Elk-L3|Epl8|LERK-8|NLERK-2	ephrin B3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124060381-2	chr5	124060259	124060459	+	575.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	-28099.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-100742825-2	chr13	100742725	100742925	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025369, intron 1 of 3)	intron (NM_025369, intron 1 of 3)	1834.0	NM_001190264	66128.0	Mm.306173	NM_025369	ENSMUSG00000061474	Mrps36	1110018B13Rik|S36mt	mitochondrial ribosomal protein S36	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-82691624-4	chr7	82691539	82691739	+	954.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175317, intron 12 of 19)	intron (NM_175317, intron 12 of 19)	43025.0	NM_175317	101592.0	Mm.238020	NM_175317	ENSMUSG00000038563	Efl1	4932434J20Rik|6030468D11Rik|AI451340|AU019507|AU022896|D7Ertd791e|Eftud1	elongation factor like GPTase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-29147027-2	chr10	29146927	29147127	+	740.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_026138, exon 2 of 7)	exon (NM_026138, exon 2 of 7)	3031.0	NM_026138	67412.0	Mm.390264	NM_026138	ENSMUSG00000038916	Soga3	6330407J23Rik	SOGA family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-69471885-3	chr18	69471785	69471985	+	668.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 5 of 19)	intron (NM_001361128, intron 5 of 19)	125725.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	0.0114950491274462	-0.118646637004109	-0.123827591303831	-0.127829061840578	0.0157168414629315	0.623580605268163	0.347476155673694	-0.127129735544369	3.07625067446636	0.157754682001515	1
Merged-chr3-65666447-8	chr3	65666330	65666530	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037923, intron 1 of 2)	CpG	202.0	NM_001166659	624866.0	Mm.296317	NM_001037923	ENSMUSG00000074579	Lekr1	EG546798|EG624866|Gm6534	leucine, glutamate and lysine rich 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-103565374-3	chr2	103565269	103565469	+	602.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178890)	promoter-TSS (NM_178890)	-941.0	NM_178890	99382.0	Mm.35850	NM_178890	ENSMUSG00000032724	Abtb2	AW539457|BPOZ-2	ankyrin repeat and BTB (POZ) domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-118552310-2	chr1	118552210	118552410	+	689.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359330, intron 30 of 39)	intron (NM_001359330, intron 30 of 39)	-75635.0	NM_023755	81879.0	Mm.24621	NM_023755	ENSMUSG00000026380	Tfcp2l1	1810030F05Rik|4932442M07Rik|AA575098|Cp2l1|Crtr-1|D930018N21Rik|LBP-9|Tcfcp2l1	transcription factor CP2-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-107559196-2	chr3	107559096	107559296	+	836.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4123.0	NM_026261	67591.0	Mm.55982	NM_026261	ENSMUSG00000055891	Ubl4b	4930522D07Rik	ubiquitin-like 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-79623303-4	chr11	79623240	79623440	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_003283)	promoter-TSS (NR_003283)	-177.0	NR_003283	790912.0	Mm.447313	NR_003283	ENSMUSG00000087434	Rab11fip4os1	Gm11202	RAB11 family interacting protein 4 (class II), opposite strand 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-65318127-4	chr3	65318035	65318235	+	804.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357358, intron 7 of 13)	intron (NM_001357358, intron 7 of 13)	-15450.0	NR_126080	102637797.0	Mm.446731	NR_126080	ENSMUSG00000104093	A330015K06Rik	-	RIKEN cDNA A330015K06 gene	ncRNA	4.64844846618211	3.96850212905624	2.5610552276859	4.70299665323411	4.52403990767834	3.18759488683329	3.19950571859972	4.27971670602895	-0.346670751761844	0.55335843450628	0.959685872563428
Merged-chr15-58297783-2	chr15	58297683	58297883	+	581.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26386.0	NM_177755	268807.0	Mm.124498	NM_177755	ENSMUSG00000022357	Klhl38	8230402K04Rik	kelch-like 38	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106206831-3	chr11	106206694	106206894	+	630.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026009, intron 6 of 12)	intron (NM_026009, intron 6 of 12)	9573.0	NM_026009	67163.0	Mm.22109	NM_026009	ENSMUSG00000078622	Ccdc47	2610204L23Rik|C88307|asp4|calumin	coiled-coil domain containing 47	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-161737000-2	chr1	161736914	161737114	+	631.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51481.0	NM_001205243	14103.0	Mm.3355	NM_010177	ENSMUSG00000000817	Fasl	APT1LG1|CD178|CD95-L|CD95L|Fas-L|Faslg|Tnfsf6|Tnlg1a|gld	Fas ligand (TNF superfamily, member 6)	protein-coding	1.34502070226764	2.91871728765532	2.72745022903597	1.86130389643526	2.53440318318444	2.73883153538302	2.74894951321885	2.66389674846625	0.620029863515811	0.473717537019583	0.926125823511231
Merged-chr8-117051643-2	chr8	117051543	117051743	+	725.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_029686, exon 15 of 43)	exon (NM_029686, exon 15 of 43)	30806.0	NM_029686	76645.0	Mm.159753	NM_029686	ENSMUSG00000034416	Pkd1l2	1700126L06Rik	polycystic kidney disease 1 like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-89296578-4	chr6	89296513	89296713	+	933.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10888.0	NR_131021	75131.0	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	Gm44205	RIKEN cDNA 4930512J16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-45962145-1	chr4	45962045	45962245	+	557.0	f1_balb.idr	Intergenic	Intergenic	-3190.0	NM_001290475	100121.0	Mm.275413	NM_146142	ENSMUSG00000035517	Tdrd7	5730495N10Rik|AI447470|PCTAIRE2BP	tudor domain containing 7	protein-coding	0.0216964755648522	-0.193177513670822	-0.196424602281493	-0.198902357694434	-0.202362950109222	-0.0244383922276108	0.199534330617515	0.168193485499011	2.00469181220216	0.388496596814235	1
Merged-chr17-35030303-1	chr17	35030203	35030403	+	885.0	f1_balb.idr	intron (NM_013600, intron 19 of 23)	intron (NM_013600, intron 19 of 23)	-2287.0	NM_023893	78376.0	Mm.390966	NM_023893	ENSMUSG00000036185	Sapcd1	2810436B06Rik|G7d|Ng23	suppressor APC domain containing 1	protein-coding	7.33931990936632e-05	0.0156723619671925	0.661412836664998	0.301354713160865	0.00104481726982161	0.016827591284728	0.334171765105387	0.305839559974682	-0.801560942146765	0.704865195403499	1
Merged-chr13-19842939-3	chr13	19842843	19843043	+	831.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18686.0	NM_181754	353346.0	Mm.239268	NM_181754	ENSMUSG00000053101	Gpr141	PGR13	G protein-coupled receptor 141	protein-coding	2.69007793260328	2.69769955397884	2.82070363068934	1.49183818844944	3.07012301681413	2.83354449392492	2.50285325164472	2.84768801061254	0.601174638345237	0.443902883090512	0.912265842646861
Merged-chr2-26604417-4	chr2	26604330	26604530	+	976.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026212)	promoter-TSS (NM_026212)	-13.0	NM_026212	67512.0	Mm.24244	NM_026212	ENSMUSG00000026922	Agpat2	2510002J07Rik|AV000834|BSCL|BSCL1|LPAAB|LPAAT-beta	1-acylglycerol-3-phosphate O-acyltransferase 2 (lysophosphatidic acid acyltransferase, beta)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152827686-2	chr1	152827586	152827786	+	621.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010877, intron 8 of 15)	intron (NM_010877, intron 8 of 15)	27533.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117839090-4	chr10	117838996	117839196	+	993.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024457, intron 1 of 7)	B3|SINE|B2	6878.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-37177188-3	chr19	37177067	37177267	+	725.06665	f1_balb.idr|f1_c57bl6.idr	intron (NR_045329, intron 2 of 2)	intron (NR_045329, intron 2 of 2)	-1104.0	NM_001290826	208922.0	Mm.391176	NM_198300	ENSMUSG00000039652	Cpeb3	4831444O18Rik|CPE-BP3|mKIAA0940	cytoplasmic polyadenylation element binding protein 3	protein-coding	-1.11589496890002	-1.09450166798638	-1.10527661558122	-1.11289118706061	-0.743330102955235	-1.09216669189381	-1.10283740362588	-0.812267967659489	2.60947216455732	0.420385736532007	1
Merged-chr11-34427410-4	chr11	34427308	34427508	+	947.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033374, intron 27 of 51)	intron (NM_033374, intron 27 of 51)	112586.0	NM_001025382	574403.0	Mm.444796	NM_001025382	ENSMUSG00000069911	Fam196b	EG574403|Gm6041	family with sequence similarity 196, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-25809279-4	chr6	25809153	25809353	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133931)	promoter-TSS (NM_133931)	-27.0	NM_133931	101185.0	Mm.274589	NM_133931	ENSMUSG00000029676	Pot1a	1500031H18Rik|AI851169|Pot1	protection of telomeres 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-172589455-1	chr1	172589355	172589555	+	609.0	f1_c57bl6.idr	intron (NM_029084, intron 1 of 4)	intron (NM_029084, intron 1 of 4)	1113.0	NM_029084	74748.0	Mm.179812	NM_029084	ENSMUSG00000053318	Slamf8	5830408F06Rik|Blame|SBBI42	SLAM family member 8	protein-coding	-0.184742319558361	0.876479148272751	-0.169717926908764	-0.175315188395751	-0.1833289478384	0.563017178180686	-0.168128671327003	-0.174333049595426	-0.785269516612611	0.742905196376045	1
Merged-chr10-44292419-2	chr10	44292319	44292519	+	672.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001314013, intron 3 of 6)	intron (NM_001314013, intron 3 of 6)	24080.0	NM_001358596	11793.0	Mm.22264	NM_053069	ENSMUSG00000038160	Atg5	2010107M05Rik|3110067M24Rik|AW319544|Apg5l|Atg5l|C88337|Paddy	autophagy related 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-118103451-4	chr10	118103335	118103535	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38352.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	6.64288476039603	6.25722883191973	5.41771408550073	5.97012965866207	6.29671548188319	6.71688040605488	6.56345025620314	6.01415302543868	0.294119514802901	0.269452262206227	0.772801970187325
Merged-chr10-60082594-1	chr10	60082494	60082694	+	652.0	f0_balb.idr	intron (NM_026937, intron 9 of 10)	ORR1F|LTR|ERVL-MaLR	-23663.0	NM_052994	94214.0	Mm.153429	NM_052994	ENSMUSG00000058297	Spock2	AA407235|Gcap26|mKIAA0275	sparc/osteonectin, cwcv and kazal-like domains proteoglycan 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-117277040-3	chr6	117276940	117277140	+	854.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	108505.0	NM_021704	20315.0	Mm.303231	NM_013655	ENSMUSG00000061353	Cxcl12	Pbsf|Scyb12|Sdf1|Tlsf|Tpar1	chemokine (C-X-C motif) ligand 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-23530400-4	chr13	23530327	23530527	+	980.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153173)	promoter-TSS (NM_153173)	-617.0	NM_153173	69386.0	Mm.158272	NM_153173	ENSMUSG00000060981	Hist1h4h	1700024H08Rik	histone cluster 1, H4h	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53159371-3	chr4	53159276	53159476	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 1 of 49)	intron (NM_013454, intron 1 of 49)	519.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-81961477-3	chr3	81961396	81961596	+	890.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_019911, exon 10 of 12)	exon (NM_019911, exon 10 of 12)	14232.0	NM_019911	56720.0	Mm.258622	NM_019911	ENSMUSG00000028011	Tdo2	AA407491|TDO|TO|chky	tryptophan 2,3-dioxygenase	protein-coding	2.07483665147214	2.69639562317636	2.06686095232296	2.20166678176311	0.950386534513815	1.54702765173299	1.01137541979442	0.987014877126075	-4.06198821952449	0.00215862627404738	0.0353170882309371
Merged-chr8-13593081-1	chr8	13592981	13593181	+	606.0	f1_c57bl6.idr	intron (NM_009025, intron 7 of 23)	intron (NM_009025, intron 7 of 23)	-30620.0	NM_001080781	66501.0	Mm.46136	NM_025601	ENSMUSG00000031452	1700029H14Rik	-	RIKEN cDNA 1700029H14 gene	protein-coding	-1.84303373260285	-1.81303463126392	-1.82210660711932	-1.82955859819738	-1.84092785115721	-1.81106869625141	-1.8200529106377	-1.54273750312762	1.50114612804783	0.670102668014672	1
Merged-chr7-89979743-3	chr7	89979641	89979841	+	961.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021876, intron 1 of 11)	intron (NM_021876, intron 1 of 11)	1235.0	NM_021876	13626.0	Mm.380914	NM_021876	ENSMUSG00000030619	Eed	l(7)5Rn|l7Rn5|lusk	embryonic ectoderm development	protein-coding	1.45789042706992	0.699938332366967	2.03180440545558	0.672705886917249	1.37580953879636	1.14971722434847	0.917464979715675	0.674821203405757	-1.09268928088648	0.461078492566722	0.920953234475195
Merged-chr8-107277654-4	chr8	107277560	107277760	+	976.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_039557, intron 2 of 3).3	intron (NR_039557, intron 2 of 3).3	-15810.0	NM_018823	54446.0	Mm.390057	NM_018823	ENSMUSG00000003847	Nfat5	AI225870|B130038B15Rik|CAG-8|CAG80|NFATL1|OREBP|TonEBP|mKIAA0827|nfatz	nuclear factor of activated T cells 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45299951-4	chr7	45299816	45300016	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17043.0	NM_001033176	76713.0	Mm.425445	NM_001033176	ENSMUSG00000070568	Slc6a21	1700039E15Rik|Gm19188	solute carrier family 6 member 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27814727-1	chr17	27814627	27814827	+	617.0	f1_balb.idr	intron (NM_001033279, intron 1 of 4)	intron (NM_001033279, intron 1 of 4)	5815.0	NM_001033279	224647.0	Mm.196577	NM_001033279	ENSMUSG00000056692	D17Wsu92e	AU020189|C030010A15|C80239	DNA segment, Chr 17, Wayne State University 92, expressed	protein-coding	0.651335737554225	0.387458158807844	1.09318792966188	0.83008096717326	1.21488091875045	0.389348755485141	0.380895839639862	0.373631311499044	-0.528639917227173	0.772004651602999	1
Merged-chr12-110843839-4	chr12	110843742	110843942	+	997.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_152102)	TTS (NR_152102)	2813.0	NR_152102	66709.0	Mm.390504	NR_152102		4921507G05Rik	-	RIKEN cDNA 4921507G05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-71785147-2	chr18	71785047	71785247	+	712.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007831, intron 5 of 28)	Lx8|LINE|L1	565922.0	NM_007831	13176.0	Mm.167882	NM_007831	ENSMUSG00000060534	Dcc	C030036D22Rik|Igdcc1	deleted in colorectal carcinoma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-67608997-3	chr5	67608863	67609063	+	830.744446	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033415, intron 1 of 1)	intron (NM_001033415, intron 1 of 1)	1080.0	NM_001033415	330096.0	Mm.442747	NM_001033415	ENSMUSG00000050010	Shisa3	D830007B15Rik	shisa family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-77518050-2	chr10	77517950	77518150	+	767.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2237.0	NM_133998	108707.0	Mm.259547	NM_133998	ENSMUSG00000032977	Fam207a	1810008A18Rik|AI303072	family with sequence similarity 207, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95175410-2	chr3	95175310	95175510	+	601.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	11071.0	NM_011351	20360.0	Mm.23662	NM_011351	ENSMUSG00000038777	Sema6c	Semay|mKIAA1869	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3604047-2	chr19	3603967	3604167	+	641.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008513, exon 15 of 23)	exon (NM_008513, exon 15 of 23)	-28318.0	NM_028999	52036.0	Mm.284686	NM_028999	ENSMUSG00000024908	Ppp6r3	4930528G08Rik|9130026N02Rik|D19Bwg1430e|D19Ertd703e|Pp6r3|Ppcs3|Pptcs3|Sapl|Saps3|mKIAA1558	protein phosphatase 6, regulatory subunit 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167927847-2	chr2	167927747	167927947	+	693.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-4480.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-24810312-2	chr13	24810212	24810412	+	770.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_024473, intron 4 of 4)	intron (NM_024473, intron 4 of 4)	8655.0	NM_024473	79555.0	Mm.266668	NM_024473	ENSMUSG00000019132	BC005537	8030460C05Rik|C78201	cDNA sequence BC005537	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-95835481-4	chr11	95835371	95835571	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025659, intron 3 of 7)	intron (NM_025659, intron 3 of 7)	-6824.0	NM_023121	14710.0	Mm.46299	NM_023121	ENSMUSG00000038811	Gngt2	AV096488	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-45585031-3	chr17	45584941	45585141	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001199116)	TTS (NM_001199116)	7352.0	NM_022880	63959.0	Mm.29744	NM_022880	ENSMUSG00000023942	Slc29a1	1200014D21Rik|AA407560|ENT1	solute carrier family 29 (nucleoside transporters), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-40478174-4	chr12	40478083	40478283	+	703.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	32130.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-6316818-3	chr17	6316597	6316797	+	781.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166629, intron 1 of 4)	intron (NM_001166629, intron 1 of 4)	777.0	NM_001166629	100310872.0	Mm.381893	NM_001166629	ENSMUSG00000092074	Dynlt1a	-	dynein light chain Tctex-type 1A	protein-coding	0.992829526410396	0.849501916326975	1.2743132267825	0.812495855934238	1.00069571257302	1.80427365223891	2.28976170023266	1.97195352014341	3.1823710993806	0.0185962117047967	0.170665997986347
Merged-chr10-7673786-3	chr10	7673655	7673855	+	832.722229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145706, intron 5 of 7)	intron (NM_145706, intron 5 of 7)	6251.0	NM_145706	69912.0	Mm.299887	NM_145706	ENSMUSG00000040034	Nup43	2610016K01Rik|2610529I12Rik|AA409950|p42	nucleoporin 43	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59592397-2	chr15	59592297	59592497	+	692.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026746, intron 6 of 6)	intron (NM_026746, intron 6 of 6)	-56257.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69760760-2	chr11	69760660	69760860	+	849.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_019871, exon 2 of 2)	exon (NM_019871, exon 2 of 2)	1084.0	NM_019871	56293.0	Mm.6211	NM_019871	ENSMUSG00000018776	Slc35g3	Amac1	solute carrier family 35, member G3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101077763-4	chr15	101077621	101077821	+	878.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23322.0	NM_001214911	668225.0	Mm.385011	NM_001214911	ENSMUSG00000095440	Fignl2	EG668225	fidgetin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-21403516-2	chr11	21403416	21403616	+	578.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32249.0	NM_001290634	216558.0	Mm.28877	NM_139297	ENSMUSG00000001891	Ugp2	UDPGP|UGPase	UDP-glucose pyrophosphorylase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-122110124-3	chr2	122110029	122110229	+	683.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145531, intron 4 of 39)	intron (NM_145531, intron 4 of 39)	8257.0	NM_145531	214585.0	Mm.222303	NM_145531	ENSMUSG00000033396	Spg11	6030465E24Rik|A330015I11|C530005A01Rik	SPG11, spatacsin vesicle trafficking associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-56726858-3	chr16	56726773	56726973	+	715.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172825, intron 15 of 15)	L1MEf|LINE|L1	-9423.0	NM_001357126	21787.0	Mm.425970	NM_019678	ENSMUSG00000022757	Tfg	AI173908	Trk-fused gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-83842655-4	chr3	83842548	83842748	+	985.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1040.0	NM_011905	24088.0	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5090060-2	chr19	5089960	5090160	+	720.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_026553, exon 4 of 8)	exon (NM_026553, exon 4 of 8)	1522.0	NM_026553	68090.0	Mm.44202	NM_026553	ENSMUSG00000024875	Yif1a	5330422J23Rik|54TM|Yif1|Yif1p	Yip1 interacting factor homolog A (S. cerevisiae)	protein-coding	-0.183985878671379	-0.158163990680755	-0.166454289196668	-0.172960518594604	-0.182327380608656	0.46308286857115	1.12478104297617	-0.171816769414298	4.31628687170106	0.0557095636208423	1
Merged-chr12-104471750-4	chr12	104471661	104471861	+	961.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010351, intron 2 of 2)	intron (NM_010351, intron 2 of 2)	1475.0	NM_010351	14836.0	Mm.129	NM_010351	ENSMUSG00000021095	Gsc	-	goosecoid homeobox	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-77891189-4	chr10	77891079	77891279	+	867.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2241.0	NR_015547	75188.0	Mm.348012	NM_029200	ENSMUSG00000096573	1700009J07Rik	4930535B06Rik	RIKEN cDNA 1700009J07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-79351230-2	chr15	79351130	79351330	+	936.0833130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001304832, intron 1 of 2)	intron (NM_001304832, intron 1 of 2)	2828.0	NM_001304832	17133.0	Mm.86646	NM_010755	ENSMUSG00000042622	Maff	-	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein F (avian)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-57577181-3	chr18	57577081	57577281	+	750.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029290, intron 3 of 6)	MLT1C|LTR|ERVL-MaLR	-24784.0	NR_015494	75084.0	Mm.243841	NR_015494	ENSMUSG00000086607	4930511M06Rik	-	RIKEN cDNA 4930511M06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124444791-4	chr5	124444683	124444883	+	862.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310723)	promoter-TSS (NM_001310723)	-716.0	NM_001310723	67956.0	Mm.137966	NM_030241	ENSMUSG00000049327	Kmt5a	2410195B05Rik|AA617402|AW536475|PR-SET7|PR/SET07|Setd8	lysine methyltransferase 5A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-44679748-4	chr10	44679656	44679856	+	975.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-221008.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141978709-3	chr4	141978607	141978807	+	858.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177868, intron 5 of 31)	intron (NM_177868, intron 5 of 31)	-4285.0	NR_040672	545691.0	Mm.332015	NR_040672	ENSMUSG00000085424	Fhad1os1	Gm13037	forkhead-associated (FHA) phosphopeptide binding domain 1, opposite strand 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-137954321-4	chr3	137954213	137954413	+	929.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011932, intron 3 of 8)	intron (NM_011932, intron 3 of 8)	27236.0	NM_001310753	26377.0	Mm.254835	NM_011932	ENSMUSG00000028159	Dapp1	Bam32	dual adaptor for phosphotyrosine and 3-phosphoinositides 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-86819416-4	chr11	86819345	86819545	+	957.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11785.0	NM_026191	67487.0	Mm.260627	NM_026191	ENSMUSG00000018425	Dhx40	2410016C14Rik|ARG147|DDX40|PAD	DEAH (Asp-Glu-Ala-His) box polypeptide 40	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21029591-4	chr9	21029490	21029690	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010493)	TTS (NM_010493)	217.0	NM_023892	78369.0	Mm.30220	NM_023892	ENSMUSG00000001014	Icam4	1810015M19Rik|Cd242|ICAM-4	intercellular adhesion molecule 4, Landsteiner-Wiener blood group	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-90364166-2	chr5	90364066	90364266	+	720.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198010, intron 1 of 32)	intron (NM_198010, intron 1 of 32)	2019.0	NM_030886	81702.0	Mm.245522	NM_030886	ENSMUSG00000055204	Ankrd17	4933425K22Rik|A130069E23Rik|A930008M01|AA407558|AA516750|AU040470|Foe|Gtar|Mask|mKIAA0697	ankyrin repeat domain 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-66942683-2	chr9	66942583	66942783	+	856.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3403.0	NM_001311101	67941.0	Mm.30120	NM_026467	ENSMUSG00000036781	Rps27l	1810034D23Rik	ribosomal protein S27-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-5844890-3	chr13	5844789	5844989	+	863.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13203.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70229087-4	chr11	70228983	70229183	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007528, exon 2 of 9)	exon (NM_007528, exon 2 of 9)	715.0	NM_007528	12029.0	Mm.12930	NM_007528	ENSMUSG00000000317	Bcl6b	Bazf	B cell CLL/lymphoma 6, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53415086-2	chr4	53414986	53415186	+	724.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-25327.0	NM_001159633	100434.0	Mm.482207	NM_133891	ENSMUSG00000028412	Slc44a1	2210409B22Rik|4833416H08Rik|AW547365|CHTL1|CTL1|Cdw92	solute carrier family 44, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-81156891-4	chr5	81156776	81156976	+	899.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198702, intron 2 of 27)	intron (NM_198702, intron 2 of 27)	135283.0	NM_198702	319387.0	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	0.652092554701212	0.328011944867318	1.64043274360119	1.49534741607915	0.289560953533853	0.330915782269952	0.317838377868088	0.30639887486294	-4.79588902989382	0.00795296825900642	0.0927004985474991
Merged-chr1-152622016-4	chr1	152621914	152622114	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346119, intron 2 of 17)	intron (NM_001346119, intron 2 of 17)	3203.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-5051675-4	chr7	5051629	5051829	+	976.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026900, intron 1 of 1)	CpG	197.0	NM_026900	68992.0	Mm.41484	NM_026900	ENSMUSG00000055633	Zfp580	1500015O20Rik|AI838225|Znf580	zinc finger protein 580	protein-coding	3.02733467643236	2.92612010896967	2.49554862313319	1.28201635479915	3.37075366025794	3.13019626185297	1.62255677264414	1.28884169799148	0.135332250637385	0.892879341566752	0.998431161219273
Merged-chr16-36752166-4	chr16	36752071	36752271	+	963.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021301, intron 21 of 21)	intron (NM_021301, intron 21 of 21)	32791.0	NM_001145899	57738.0	Mm.281804	NM_021301	ENSMUSG00000022899	Slc15a2	8430408C16Rik|C78862|Pept2	solute carrier family 15 (H+/peptide transporter), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-21999779-3	chr11	21999666	21999866	+	713.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011023, intron 2 of 4)	intron (NM_011023, intron 2 of 4)	1885.0	NM_011023	18423.0	Mm.129663	NM_011023	ENSMUSG00000005917	Otx1	A730044F23Rik|jv	orthodenticle homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-89024430-4	chr11	89024266	89024466	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24963.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	4.46048781332784	4.27046470116451	4.62603002988057	4.6773344560232	4.53322844681536	4.36656291236949	5.01592251291849	4.2224746188298	0.0631612623574172	0.867790092307956	0.998431161219273
Merged-chr17-81510878-1	chr17	81510778	81510978	+	632.0	f0_balb.idr	intron (NR_104580, intron 2 of 8)	intron (NR_104580, intron 2 of 8)	227509.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-83652556-4	chr8	83652428	83652628	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018771)	promoter-TSS (NM_018771)	-150.0	NM_018771	67903.0	Mm.20945	NM_018771	ENSMUSG00000019433	Gipc1	GIPC|Glut1CIP|Rgs19ip1|Semcap1|TIP-2|TaxIP2	GIPC PDZ domain containing family, member 1	protein-coding	3.69119198199201	3.47449160150835	3.6740844810735	3.82131000734243	3.03419291674571	3.1867561403734	3.62979025499665	2.73251386946023	-0.771227921026233	0.160815891307994	0.621041401943631
Merged-chr7-28353014-2	chr7	28352914	28353114	+	671.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_013647)	TTS (NM_013647)	1474.0	NR_028129	100302567.0		NR_028129		AF357399	MBI-142	snoRNA AF357399	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-94802004-1	chr8	94801904	94802104	+	552.0	f1_balb.idr	Intergenic	L2|LINE|L2	-8449.0	NM_011332	20295.0	Mm.41988	NM_011332	ENSMUSG00000031780	Ccl17	Abcd-2|Scya17|Scya17l|Tarc	chemokine (C-C motif) ligand 17	protein-coding	0.940385056246785	0.188758389306179	0.356376919357614	0.476410854819698	0.547496678177888	0.190094694963354	0.361200287219026	0.179058108468926	-1.37037531975727	0.469304339529519	1
Merged-chr2-52872823-4	chr2	52872724	52872924	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	14956.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-106687498-4	chr9	106687332	106687532	+	890.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_030730)	TTS (NM_030730)	-1480.0	NM_001286498	21767.0	Mm.22266	NM_011573	ENSMUSG00000040813	Tex264	TEG-264	testis expressed gene 264	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-21599153-3	chr19	21599076	21599276	+	950.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025423, intron 2 of 3)	intron (NM_025423, intron 2 of 3)	53615.0	NM_025423	66206.0	Mm.272430	NM_025423	ENSMUSG00000035171	1110059E24Rik	-	RIKEN cDNA 1110059E24 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-93192393-4	chr13	93192310	93192510	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133905)	promoter-TSS (NM_133905)	7.0	NM_001361536	100715.0	Mm.242865	NM_133905	ENSMUSG00000042167	Papd4	8030446C20Rik|AI649009|GLD-2|Gld2	PAP associated domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-43521393-4	chr19	43521277	43521477	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010324, intron 1 of 8)	(A)n|Simple_repeat|Simple_repeat	3228.0	NM_010324	14718.0	Mm.19039	NM_010324	ENSMUSG00000025190	Got1	AI789014|Got-1|cAspAT|cCAT	glutamic-oxaloacetic transaminase 1, soluble	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-31888599-2	chr10	31888505	31888705	+	570.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013411, intron 4 of 6)	L1_Mus3|LINE|L1	-278880.0	NM_001146349	268291.0	Mm.295212	NM_001146349	ENSMUSG00000063760	Rnf217	AU016819|Ibrdc1	ring finger protein 217	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-39054520-2	chr6	39054420	39054620	+	611.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 9 of 12)	intron (NM_011539, intron 9 of 12)	13066.0	NR_040523	69986.0	Mm.490941	NR_040523	ENSMUSG00000100121	1700025N23Rik	-	RIKEN cDNA 1700025N23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-195131114-4	chr1	195131032	195131232	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001355061, exon 1 of 9)	5' UTR (NM_001355061, exon 1 of 9)	438.0	NM_001355060	12946.0	Mm.301652	NM_013499	ENSMUSG00000016481	Cr1l	Crry|Mcp|mCRY	complement component (3b/4b) receptor 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-57448118-3	chr10	57447987	57448187	+	766.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38266.0	NR_045353	74928.0	Mm.416643	NR_045353	ENSMUSG00000097370	4930467K11Rik	-	RIKEN cDNA 4930467K11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69432270-4	chr11	69432174	69432374	+	939.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081330, intron 73 of 85)	intron (NM_001081330, intron 73 of 85)	-18599.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-101801477-4	chr13	101801438	101801638	+	950.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33321.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91983136-2	chr2	91983036	91983236	+	904.099976	f1_balb.idr|f1_c57bl6.idr	intron (NM_011957, intron 11 of 11)	intron (NM_011957, intron 11 of 11)	-19573.0	NM_138306	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-20881593-4	chr5	20881510	20881710	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177601)	promoter-TSS (NM_177601)	514.0	NM_172992	68770.0	Mm.86410	NM_172992	ENSMUSG00000039987	Phtf2	1110054G21Rik|9530062N20Rik|AI447096|C77923	putative homeodomain transcription factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91394242-2	chr16	91394142	91394342	+	564.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001110498)	TTS (NM_001110498)	-11993.0	NM_008349	16155.0	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67260453-2	chr10	67260353	67260553	+	657.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	24828.0	NM_001036293	641340.0	Mm.136223	NM_001036293	ENSMUSG00000075000	Nrbf2	NRBF-2	nuclear receptor binding factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-55339601-2	chr13	55339501	55339701	+	813.875	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13D3A1|LTR|ERVK	-9871.0	NM_016662	17121.0	Mm.20350	NM_016662	ENSMUSG00000021485	Mxd3	4631412E13Rik|Mad3|bHLHc13	Max dimerization protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-160047864-4	chr2	160047773	160047973	+	869.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	31220.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-113710173-1	chr6	113710073	113710273	+	545.0	f1_c57bl6.idr	exon (NM_001033463, exon 7 of 8)	exon (NM_001033463, exon 7 of 8)	2965.0	NR_106009	102465631.0		NR_106009	ENSMUSG00000106581	Mir7042	mmu-mir-7042	microRNA 7042	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-59902375-4	chr11	59902311	59902511	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(A)n|Simple_repeat|Simple_repeat	-19088.0	NR_130986	69854.0	Mm.57859	NR_130986	ENSMUSG00000085551	1810063I02Rik	-	RIKEN cDNA 1810063I02 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10376860-3	chr19	10376759	10376959	+	746.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12231.0	NM_018801	54525.0	Mm.182654	NM_018801	ENSMUSG00000024743	Syt7	AI851541|B230112P13Rik	synaptotagmin VII	protein-coding	3.00961279976348	2.34808163972368	2.40530985469675	2.06185877389526	3.0335355186787	2.36496651622513	2.42378418583257	2.07195465298335	0.0394972831993147	0.960872564552009	0.998431161219273
Merged-chr1-195013808-2	chr1	195013708	195013908	+	673.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3591.0	NR_015566	320977.0	Mm.99905	NR_015566	ENSMUSG00000096929	A330023F24Rik	C030002C11Rik	RIKEN cDNA A330023F24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141381423-6	chr7	141381244	141381444	+	777.361084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10816.0	NM_011528	21351.0	Mm.29182	NM_011528	ENSMUSG00000025503	Taldo1	-	transaldolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-21890533-4	chr10	21890447	21890647	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161845, intron 1 of 13)	ID_B1|SINE|B4	8363.0	NM_001161845	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	5.09369003873678	5.50014677085232	4.9975068597194	6.02564990763894	4.67510013921986	5.06287044687487	5.21637250348156	4.93106441548736	-0.567937295521898	0.085747491221062	0.449911836590511
Merged-chr6-29357518-2	chr6	29357418	29357618	+	557.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_184053, intron 2 of 6)	intron (NM_184053, intron 2 of 6)	9412.0	NM_007594	12321.0	Mm.392075	NM_007594	ENSMUSG00000029767	Calu	9530075H20Rik	calumenin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-96789166-4	chr11	96789097	96789297	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007622)	promoter-TSS (NM_007622)	61.0	NM_007622	12412.0	Mm.29055	NM_007622	ENSMUSG00000018666	Cbx1	Cbx|Cbx-rs2|E430007M08Rik|HP1B|Hp1beta|M31|MOD1	chromobox 1	protein-coding	2.58187646986114	2.10677938721977	4.2702916249862	3.65586183768082	2.0523482977811	2.12405616886742	2.95801924947072	2.86115002351566	-1.46170555074678	0.0571334969033567	0.353483557798245
Merged-chr3-34082558-2	chr3	34082458	34082658	+	629.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1204.0	NM_001286973	67713.0	Mm.274266	NM_026332	ENSMUSG00000027679	Dnajc19	1810055D05Rik|AA959924|Tim14	DnaJ heat shock protein family (Hsp40) member C19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-120313934-2	chr13	120313834	120314034	+	799.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2928.0	NM_153523	236219.0	Mm.302175	NM_153523	ENSMUSG00000095821	Tcstv3	-	2-cell-stage, variable group, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-79799247-2	chr7	79799147	79799347	+	920.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5657.0	NM_008588	17292.0	Mm.1404	NM_008588	ENSMUSG00000030544	Mesp1	bHLHc5	mesoderm posterior 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-97265184-4	chr3	97265100	97265300	+	937.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-37836.0	NM_029933	77578.0	Mm.226175	NM_029933	ENSMUSG00000038256	Bcl9	2610202E01Rik|8030475K17Rik|A330041G23Rik|Gm130	B cell CLL/lymphoma 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69621979-4	chr11	69621863	69622063	+	925.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356469)	promoter-TSS (NM_001356469)	-89.0	NM_026991	69215.0	Mm.340410	NM_026991	ENSMUSG00000069835	Sat2	2610016A03Rik|SSAT-2|SSAT2	spermidine/spermine N1-acetyl transferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-53862022-4	chr18	53861896	53862096	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_152809)	promoter-TSS (NM_152809)	-117.0	NM_152809	70425.0	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-94600538-2	chr15	94600438	94600638	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10714.0	NM_008971	19230.0	Mm.490250	NM_008971	ENSMUSG00000022451	Twf1	A6|Ptk9|twinfilin	twinfilin actin binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-87153131-4	chr6	87153039	87153239	+	913.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054041, intron 17 of 17)	ORR1F|LTR|ERVL-MaLR	48393.0	NM_001167937	52372.0	Mm.282851	NM_001167937	ENSMUSG00000090891	D6Ertd527e	AU043841	DNA segment, Chr 6, ERATO Doi 527, expressed	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-134923032-2	chr4	134922926	134923126	+	737.549988	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_023665)	promoter-TSS (NM_023665)	-599.0	NM_023665	27981.0	Mm.331964	NM_023665	ENSMUSG00000037266	Rsrp1	2700043I21Rik|D4Ucla2|D4Wsu53e	arginine/serine rich protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-16216463-4	chr9	16216355	16216555	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080814, intron 2 of 24)	intron (NM_001080814, intron 2 of 24)	161776.0	NM_001080814	270120.0	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT atypical cadherin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-52306380-2	chr12	52306280	52306480	+	721.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029760, intron 10 of 10)	intron (NM_029760, intron 10 of 10)	174229.0	NR_136881	102638611.0	Mm.363799	NR_136881	ENSMUSG00000111982	Gm35135	-	predicted gene, 35135	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166657326-3	chr2	166657229	166657429	+	947.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	56503.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-111228484-3	chr5	111228343	111228543	+	782.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001267622, intron 8 of 22)	intron (NM_001267622, intron 8 of 22)	-102254.0	NM_001301644	56305.0	Mm.200516	NM_019640	ENSMUSG00000050017	Pitpnb	PI-TP-beta	phosphatidylinositol transfer protein, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-32370447-3	chr18	32370365	32370565	+	797.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045403, intron 2 of 2)	Lx9|LINE|L1	-6752.0	NM_001083334	30948.0	Mm.4383	NM_009668	ENSMUSG00000024381	Bin1	ALP-1|Amphl|BRAMP-2|SH3P9	bridging integrator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101987736-2	chr11	101987636	101987836	+	697.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029287, intron 1 of 5)	intron (NM_029287, intron 1 of 5)	680.0	NM_029287	75437.0	Mm.108632	NM_029287	ENSMUSG00000010841	1700006E09Rik	Cfap97d1	RIKEN cDNA 1700006E09 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-8844011-3	chr10	8843909	8844109	+	615.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 2 of 19)	intron (NM_175155, intron 2 of 19)	42061.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-10668802-4	chr9	10668688	10668888	+	845.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033359, intron 1 of 20)	intron (NM_001033359, intron 1 of 20)	235938.0	NM_001033359	244682.0	Mm.187021	NM_001033359	ENSMUSG00000039488	Cntn5	6720426O10Rik|A830025P08Rik|Gm507|NB-2	contactin 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78827321-2	chr15	78827221	78827421	+	813.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15326.0	NM_027219	104445.0	Mm.307488	NM_027219	ENSMUSG00000049521	Cdc42ep1	1810058K22Rik|AA980734|Borg5|CEP1|MSE55	CDC42 effector protein (Rho GTPase binding) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-61712782-3	chr2	61712669	61712869	+	786.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021526, intron 1 of 11)	ORR1B2|LTR|ERVL-MaLR	1075.0	NM_021526	59029.0	Mm.218198	NM_021526	ENSMUSG00000026914	Psmd14	2610312C03Rik|3200001M20Rik|AA986732|Pad1|Poh1|rpm11	proteasome (prosome, macropain) 26S subunit, non-ATPase, 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-68735888-4	chr10	68735797	68735997	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177794, intron 1 of 5)	intron (NM_177794, intron 1 of 5)	12151.0	NM_177794	327766.0	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125127993-3	chr6	125127895	125128095	+	927.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346610, intron 37 of 38)	intron (NM_001346610, intron 37 of 38)	-3888.0	NM_138747	110109.0	Mm.29203	NM_138747	ENSMUSG00000038279	Nop2	120kDa|A530002O17|Nol1	NOP2 nucleolar protein	protein-coding	-0.960133136201854	-0.944119573722743	-0.496194903152547	-0.956510623922685	-0.959594814146476	-0.58642076969646	-0.953510691817078	-0.956128917096314	-0.484323163866822	0.877868596773177	1
Merged-chr9-65538367-4	chr9	65538287	65538487	+	957.275024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41700.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-35452622-3	chr13	35452518	35452718	+	896.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-207244.0	NM_009881	12593.0	Mm.29002	NM_009881	ENSMUSG00000059288	Cdyl	AI325931	chromodomain protein, Y chromosome-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34681232-1	chr17	34681132	34681332	+	614.0	f1_balb.idr	intron (NM_031176, intron 5 of 32)	intron (NM_031176, intron 5 of 32)	10697.0	NM_031176	81877.0	Mm.290527	NM_031176	ENSMUSG00000033327	Tnxb	Tn-mhc|Tnx	tenascin XB	protein-coding	0.593388967713205	0.463461675680056	1.06594645570756	0.447384962915158	1.05615129176776	0.678263604472175	0.456419599260099	1.31288985029909	1.29105190284049	0.444552781016393	1
Merged-chr5-110396769-2	chr5	110396669	110396869	+	830.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001142642, intron 4 of 18)	intron (NM_001142642, intron 4 of 18)	-9642.0	NM_028596	381668.0	Mm.348782	NM_028596	ENSMUSG00000043323	Fbrsl1	2410025L10Rik|AI467568|Gm1049|Gm29766|mKIAA1545	fibrosin-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-107188442-1	chr3	107188342	107188542	+	601.0	f1_c57bl6.idr	intron (NM_001081140, intron 1 of 1)	intron (NM_001081140, intron 1 of 1)	5299.0	NM_001081140	242151.0	Mm.245155	NM_001081140	ENSMUSG00000042861	Kcna10	Gm1962|Kcna8|Kv1.8	potassium voltage-gated channel, shaker-related subfamily, member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27830674-2	chr17	27830574	27830774	+	888.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2B1|LTR|ERVL	-9413.0	NM_011432	20630.0	Mm.103949	NM_011432	ENSMUSG00000024217	Snrpc	Snrp1c|U1-C|U1C	U1 small nuclear ribonucleoprotein C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80800954-2	chr7	80800854	80801054	+	683.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016721, intron 1 of 37)	B1_Mm|SINE|Alu	2377.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-32140306-2	chr5	32140206	32140406	+	776.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008037, intron 1 of 3)	intron (NM_008037, intron 1 of 3)	3834.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-25131273-4	chr17	25131152	25131352	+	911.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-2139.0	NM_011930	26373.0	Mm.270587	NM_011930	ENSMUSG00000036636	Clcn7	ClC-7|D17Wsu51e	chloride channel, voltage-sensitive 7	protein-coding	1.51549151027681	2.41631339217531	1.12647645078882	1.82958079303548	1.39786404430715	1.14397316001622	1.78019236417078	1.94056906850529	-0.753861689584792	0.526685787468806	0.948839578239191
Merged-chr9-82233757-2	chr9	82233657	82233857	+	774.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	370087.0	NM_175213	75033.0	Mm.335329	NM_175213	ENSMUSG00000043289	Mei4	4930486G11Rik	meiotic double-stranded break formation protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-120031779-2	chr1	120031654	120031854	+	742.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001012322, intron 4 of 13)	intron (NM_001012322, intron 4 of 13)	24774.0	NM_001012322	319229.0	Mm.189223	NM_001012322	ENSMUSG00000026387	Sctr	6530402O03Rik	secretin receptor	protein-coding	1.93981619834499	2.16835732149063	1.68166244584439	2.14432335376501	1.95508758404905	2.18411613981099	2.11284792741477	1.47189761924975	-0.10656185432025	0.910791052617359	0.998431161219273
Merged-chr7-82811228-4	chr7	82811129	82811329	+	989.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55585.0	NR_046004	77800.0	Mm.444811	NR_046004	ENSMUSG00000086690	4933406J10Rik	A930009F24Rik	RIKEN cDNA 4933406J10 gene	ncRNA	4.15268729951899	4.20058964532034	4.0676407657754	4.47620127304335	3.79411162367516	2.6854789902515	3.6809426209817	3.19292118474152	-1.15431050949235	0.0190948256110954	0.174264491137365
Merged-chr16-55853086-4	chr16	55852985	55853185	+	944.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001134457, intron 4 of 5)	intron (NM_001134457, intron 4 of 5)	-14444.0	NM_001159395	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-30840900-4	chr5	30840816	30841016	+	948.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133350, intron 1 of 6)	intron (NM_133350, intron 1 of 6)	-20891.0	NM_001310516	100732.0	Mm.332295	NM_133350	ENSMUSG00000029166	Mapre3	AI790651|EB2|EB3|EBF3|RP3	microtubule-associated protein, RP/EB family, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96239618-3	chr3	96239516	96239716	+	787.166626	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178216)	promoter-TSS (NM_178216)	-474.0	NM_178216	15077.0	Mm.422680	NM_178216	ENSMUSG00000093769	Hist2h3c1	BE691662|H3-615|H3f2|Hist2h3ca1	histone cluster 2, H3c1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55702080-2	chr19	55701980	55702180	+	922.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045318, intron 1 of 3)	intron (NR_045318, intron 1 of 3)	124.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-136979913-3	chr5	136979813	136980013	+	717.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6991.0	NM_001310747	70103.0	Mm.273147	NM_027318	ENSMUSG00000059518	Znhit1	2700001K05Rik|ZNFN4A1	zinc finger, HIT domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-37271004-4	chr17	37270869	37271069	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013819, intron 2 of 7)	intron (NM_013819, intron 2 of 7)	735.0	NM_013819	14991.0	Mm.14437	NM_013819	ENSMUSG00000016206	H2-M3	H-2M3|Hmt|M3a|MuprM3|MuprM301|MuprM302|R4B2	histocompatibility 2, M region locus 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-104108073-5	chr8	104107989	104108189	+	783.82666	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009868, intron 1 of 11)	(GA)n|Simple_repeat|Simple_repeat	-2216.0	NR_131138	546096.0	Mm.252264	NR_131138	ENSMUSG00000110053	Gm29682	Gm45664	predicted gene, 29682	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-96618916-2	chr10	96618816	96619016	+	627.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007569, exon 2 of 2)	3' UTR (NM_007569, exon 2 of 2)	1915.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-105334563-1	chr2	105334463	105334663	+	607.0	f0_balb.idr	intron (NM_028747, intron 3 of 3)	intron (NM_028747, intron 3 of 3)	64756.0	NM_009037	19672.0	Mm.4876	NM_009037	ENSMUSG00000005973	Rcn1	Rcn	reticulocalbin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-81983226-2	chr11	81983126	81983326	+	751.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MamGypLTR3a|LTR|Gypsy	-14830.0	NM_001034013	11418.0	Mm.234998	NM_007384	ENSMUSG00000020704	Asic2	ACIC2|Accn1|BNC1|BNaC1|BNaC1a|Mdeg	acid-sensing (proton-gated) ion channel 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-93467084-2	chr2	93466984	93467184	+	557.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_040532, intron 3 of 4)	intron (NR_040532, intron 3 of 4)	-4134.0	NM_001136055	12521.0	Mm.4261	NM_007656	ENSMUSG00000027215	Cd82	AA682076|AL023070|C33|IA4|Kai1|Tspan27	CD82 antigen	protein-coding	-1.58994551673671	-1.55912852307891	-1.56844783632235	-1.57610299769523	-1.18549093183599	-1.55710898902261	-1.56633814807757	-1.57473272746952	1.78703309985663	0.610309988231842	1
Merged-chr10-86124337-4	chr10	86124227	86124427	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013722, intron 7 of 13)	intron (NM_013722, intron 7 of 13)	28473.0	NR_038024	78170.0	Mm.444790	NR_038024	ENSMUSG00000112493	4930486F22Rik	-	RIKEN cDNA 4930486F22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-21414057-2	chr10	21413957	21414157	+	582.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36757.0	NM_178713	237320.0	Mm.90181	NM_178713	ENSMUSG00000037542	Aldh8a1	Raldh4	aldehyde dehydrogenase 8 family, member A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-84479255-4	chr2	84479163	84479363	+	930.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR18-int|LTR|ERVK	-2488.0	NM_001177320	21788.0	Mm.124316	NM_011576	ENSMUSG00000027082	Tfpi	A630013F22Rik|AW552122|EPI|LACI	tissue factor pathway inhibitor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-68004329-2	chr11	68004229	68004429	+	795.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_018768, intron 4 of 7)	intron (NM_018768, intron 4 of 7)	37871.0	NM_018768	55943.0	Mm.3973	NM_018768	ENSMUSG00000020903	Stx8	0610007H08Rik|1110002H11Rik|4930571E13Rik|CARB	syntaxin 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99249750-3	chr7	99249644	99249844	+	807.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11133.0	NM_177448	233549.0	Mm.208030	NM_177448	ENSMUSG00000052396	Mogat2	DGAT2L5|MGAT2|Mgat1l	monoacylglycerol O-acyltransferase 2	protein-coding	2.79949005724169	2.95170140086106	3.40030036144898	1.73335300751752	2.64798362315414	2.97360913431158	1.79644918026026	3.04756558257769	-0.278075414709764	0.728296735106053	0.998431161219273
Merged-chr15-26359034-4	chr15	26358928	26359128	+	916.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310774, intron 2 of 2)	intron (NM_001310774, intron 2 of 2)	49980.0	NM_001310774	211147.0	Mm.54257	NM_177597	ENSMUSG00000022269	March11	9630025C22	membrane-associated ring finger (C3HC4) 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-24761521-4	chr13	24761428	24761628	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020567, intron 1 of 6)	GC_rich|Low_complexity|Low_complexity	409.0	NM_020567	57441.0	Mm.12239	NM_020567	ENSMUSG00000006715	Gmnn	AW546347|Gem	geminin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-50185322-2	chr17	50185222	50185422	+	549.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_181397, intron 1 of 9)	intron (NM_181397, intron 1 of 9)	5175.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67009993-4	chr10	67009894	67010094	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001204915, exon 9 of 9)	3' UTR (NM_001204915, exon 9 of 9)	4919.0	NR_110511	102634101.0	Mm.445258	NR_110511	ENSMUSG00000112925	Gm31763	-	predicted gene, 31763	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88396033-4	chr3	88395924	88396124	+	950.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_025928, exon 4 of 5)	exon (NM_025928, exon 4 of 5)	-11558.0	NM_007541	12096.0	Mm.389459	NM_007541	ENSMUSG00000074483	Bglap	BGP|Bglap1|OC|OG1|mOC-A	bone gamma carboxyglutamate protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96557280-2	chr3	96557180	96557380	+	746.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023719)	promoter-TSS (NM_023719)	-677.0	NM_023719	56338.0	Mm.410189	NM_023719	ENSMUSG00000038393	Txnip	1200008J08Rik|AA682105|Hyplip1|THIF|Tbp-2|VDUP1	thioredoxin interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-134784243-2	chr4	134784143	134784343	+	568.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-16239.0	NM_145554	100017.0	Mm.27486	NM_145554	ENSMUSG00000037295	Ldlrap1	AA691260|ARH2|Arh|Arh1|FHCB1|FHCB2	low density lipoprotein receptor adaptor protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-151661137-4	chr1	151661025	151661225	+	798.549988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022018, intron 5 of 13)	intron (NM_022018, intron 5 of 13)	89752.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-100438816-4	chr6	100438711	100438911	+	872.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(A)n|Simple_repeat|Simple_repeat	-88589.0	NR_040525	73395.0	Mm.69413	NR_040525	ENSMUSG00000101553	1700049E22Rik	-	RIKEN cDNA 1700049E22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-45100186-5	chr2	45100036	45100236	+	844.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149354, intron 2 of 2)	intron (NR_149354, intron 2 of 2)	10141.0	NM_001289521	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-88977111-2	chr9	88977011	88977211	+	788.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20191.0	NM_009742	12044.0	Mm.425593	NM_009742	ENSMUSG00000102037	Bcl2a1a	A1|BB218357|Bcl2a1|Bfl-1|Hbpa1	B cell leukemia/lymphoma 2 related protein A1a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-100605142-2	chr15	100605082	100605282	+	731.75	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-5198.0	NM_001304965	19009.0	Mm.28825	NM_010127	ENSMUSG00000009739	Pou6f1	2310038G18Rik|C79593|Emb|cns-1	POU domain, class 6, transcription factor 1	protein-coding	1.46072307836284	1.15667995860148	1.30575318656141	1.66098433107537	1.21646331192915	0.921873018078378	2.25608431958724	1.27588039540971	0.446547928551422	0.715174292420604	0.998431161219273
Merged-chr2-117842561-4	chr2	117842475	117842675	+	954.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040631, intron 2 of 5)	intron (NR_040631, intron 2 of 5)	20647.0	NR_040631	73938.0	Mm.399107	NR_040631	ENSMUSG00000086221	4930412B13Rik	-	RIKEN cDNA 4930412B13 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-180272487-2	chr2	180272387	180272587	+	739.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_145851, intron 1 of 9)	intron (NM_145851, intron 1 of 9)	978.0	NM_145851	252966.0	Mm.386884	NM_145851	ENSMUSG00000038990	Cables2	ik3-2	CDK5 and Abl enzyme substrate 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-119818729-2	chr8	119818629	119818829	+	936.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028071, intron 3 of 3)	intron (NM_028071, intron 3 of 3)	21850.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-104549759-4	chr11	104549661	104549861	+	874.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010858)	promoter-TSS (NM_010858)	859.0	NM_001285990	217232.0	Mm.89845	NM_145436	ENSMUSG00000020687	Cdc27	AI452358|APC3|BC023187	cell division cycle 27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81399492-2	chr10	81399392	81399592	+	958.25	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008688, exon 10 of 10)	3' UTR (NM_008688, exon 10 of 10)	6428.0	NM_001099917	72273.0	Mm.253147	NM_001099917	ENSMUSG00000078439	Smim24	2210404O07Rik	small integral membrane protein 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-61787544-2	chr11	61787444	61787644	+	688.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_013881, exon 22 of 27)	exon (NM_013881, exon 22 of 27)	-25456.0	NM_001164243	212627.0	Mm.27703	NM_144806	ENSMUSG00000020528	Prpsap2	A230054F23Rik	phosphoribosyl pyrophosphate synthetase-associated protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-9637866-3	chr14	9637765	9637965	+	829.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360141, intron 8 of 9)	intron (NM_001360141, intron 8 of 9)	-246230.0	NR_030680	100042415.0	Mm.235938	NR_030680	ENSMUSG00000089686	Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-35405887-2	chr3	35405787	35405987	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	260276.0	NR_040748	625963.0	Mm.251506	NR_040748	ENSMUSG00000105662	Gm6639	-	predicted gene 6639	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21037491-2	chr9	21037391	21037591	+	660.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_008319, intron 9 of 10)	intron (NM_008319, intron 9 of 10)	-5163.0	NR_035438	100316681.0		NR_035438	ENSMUSG00000084663	Mir1900	Mirn1900|mmu-mir-1900	microRNA 1900	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-52338800-2	chr3	52338700	52338900	+	717.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019739, intron 1 of 2)	intron (NM_019739, intron 1 of 2)	70463.0	NM_019739	56458.0	Mm.29891	NM_019739	ENSMUSG00000044167	Foxo1	AI876417|Afxh|FKHR|Fkhr1|Foxo1a	forkhead box O1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-55842248-4	chr7	55842143	55842343	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001164661, exon 1 of 32)	5' UTR (NM_001164661, exon 1 of 32)	172.0	NM_001164661	20430.0	Mm.37249	NM_011370	ENSMUSG00000030447	Cyfip1	E030028J09Rik|P140SRA-1|P140sra1|Shyc|Sra-1|Sra1|l(7)1Rl|l71Rl|l7Rl1|mKIAA0068|pl-1	cytoplasmic FMR1 interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-51629212-1	chr3	51629112	51629312	+	598.0	f0_balb.idr	Intergenic	Intergenic	-31967.0	NM_174995	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-46149707-4	chr18	46149606	46149806	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49112.0	NM_001170855	28105.0	Mm.277382	NM_178872	ENSMUSG00000033949	Trim36	D18Wsu100e|haprin	tripartite motif-containing 36	protein-coding	2.58149312117339	2.24143463582628	3.5532820439002	3.52234784060144	2.60460081880845	3.06352978153657	4.03580100370934	3.16382706306615	0.367762273442124	0.591563249186926	0.969914559899697
Merged-chr14-60911001-4	chr14	60910949	60911149	+	839.883301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	126483.0	NR_040642	70478.0	Mm.274650	NM_027436	ENSMUSG00000021993	Mipep	5730405E07Rik|MIP	mitochondrial intermediate peptidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-120090346-2	chr2	120090246	120090446	+	546.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_133838, exon 6 of 6)	3' UTR (NM_133838, exon 6 of 6)	56913.0	NM_145378	211429.0	Mm.41467	NM_145378	ENSMUSG00000098488	Pla2g4b	A030011C02Rik|Gm1013|cPLA2-beta	phospholipase A2, group IVB (cytosolic)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-99163010-4	chr9	99162901	99163101	+	814.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1|SINE|Alu	-22790.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-121381011-2	chr5	121380911	121381111	+	906.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359947, intron 2 of 11)	B3|SINE|B2	4398.0	NM_001359947	231712.0	Mm.20488	NM_172275	ENSMUSG00000042726	Trafd1	1110008K06Rik|Fln29	TRAF type zinc finger domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-19926129-4	chr11	19926044	19926244	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033523, intron 1 of 5)	intron (NM_033523, intron 1 of 5)	1702.0	NM_033523	114716.0	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129877522-7	chr4	129877433	129877633	+	968.285706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28693.0	NR_045190	319894.0	Mm.59196	NR_045190	ENSMUSG00000086369	E330017L17Rik	-	RIKEN cDNA E330017L17 gene	ncRNA	4.58055692394475	4.4701782849591	3.65187834194404	3.785541133804	4.61388188718913	4.69824355275508	3.26396519116324	3.80515744351868	0.0463305338089774	0.924859411585589	0.998431161219273
Merged-chr2-29678744-4	chr2	29678635	29678835	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054050, intron 1 of 23)	intron (NM_054050, intron 1 of 23)	59015.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-74937094-4	chr14	74936977	74937177	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033439, intron 1 of 19)	MER44D|DNA|TcMar-Tigger	10800.0	NM_001252132	380916.0	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-120590670-2	chr5	120590539	120590739	+	634.400024	f1_balb.idr|f1_c57bl6.idr	intron (NM_029408, intron 1 of 4)	ORR1A2|LTR|ERVL-MaLR	1616.0	NM_029408	75732.0	Mm.425285	NM_029408	ENSMUSG00000029601	Iqcd	4933433C09Rik|AI662646	IQ motif containing D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-34401361-2	chr14	34401261	34401461	+	646.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153127, intron 6 of 6)	intron (NM_153127, intron 6 of 6)	25857.0	NM_153127	105450.0	Mm.272673	NM_153127	ENSMUSG00000041445	Mmrn2	AA986839|ENDOGLYX1|Emilin3|EndoGlyx-1	multimerin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91013147-2	chr16	91013047	91013247	+	546.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_026110)	TTS (NM_026110)	-1839.0	NM_001164483	104015.0	Mm.187079	NM_001045515	ENSMUSG00000022973	Synj1	A930006D20Rik|AA675315|mKIAA0910	synaptojanin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-112257722-2	chr2	112257622	112257822	+	547.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172521, intron 1 of 6)	intron (NM_172521, intron 1 of 6)	1569.0	NM_172521	213765.0	Mm.78965	NM_172521	ENSMUSG00000041358	Nutm1	4932438M10|Nut	NUT midline carcinoma, family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-57653131-2	chr9	57653031	57653231	+	788.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001304761, intron 1 of 14)	intron (NM_001304761, intron 1 of 14)	500.0	NM_001304761	12988.0	Mm.21974	NM_007783	ENSMUSG00000032312	Csk	AW212630|p50CSK	c-src tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117134051-3	chr8	117133970	117134170	+	808.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001163028)	TTS (NM_001163028)	-24065.0	NM_001081151	209239.0	Mm.132992	NM_001081151	ENSMUSG00000052557	Gan	A330045G18|gigaxonin	giant axonal neuropathy	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-38552103-4	chr6	38552010	38552210	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170848, intron 1 of 8)	CpG	776.0	NM_001170849	192196.0	Mm.276133	NM_138680	ENSMUSG00000029823	Luc7l2	4930471C18Rik|AA522013|AU015269|CGI59|Cgi74	LUC7-like 2 (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-83635438-2	chr10	83635338	83635538	+	625.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_145220, intron 2 of 20)	RMER20C_Mm|LTR|ERVK	13226.0	NM_145220	216190.0	Mm.282985	NM_145220	ENSMUSG00000020263	Appl2	Dip3b	adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-32160627-2	chr16	32160527	32160727	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347181, intron 1 of 2)	intron (NM_001347181, intron 1 of 2)	4967.0	NM_146069	224109.0	Mm.33498	NM_146069	ENSMUSG00000052384	Nrros	E430025L02Rik|Lrcc33|Lrrc33	negative regulator of reactive oxygen species	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115625634-2	chr11	115625534	115625734	+	668.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252395, intron 1 of 7)	ORR1B2|LTR|ERVL-MaLR	2661.0	NM_001252394	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-58350829-4	chr10	58350768	58350968	+	961.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026148, intron 1 of 9)	intron (NM_026148, intron 1 of 9)	-1095.0	NM_001359116	110829.0	Mm.57734	NM_026148	ENSMUSG00000019920	Lims1	2310016J22Rik|4921524A02Rik|AI507642|AU021743|AW551584|C430041B13Rik|Lims1l|PINCH|PINCH1	LIM and senescent cell antigen-like domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-143838114-2	chr2	143838014	143838214	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291061, intron 5 of 7)	MLT1E2|LTR|ERVL-MaLR	25059.0	NM_009751	12075.0	Mm.275937	NM_009751	ENSMUSG00000027420	Bfsp1	CP95	beaded filament structural protein 1, in lens-CP94	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-152093525-2	chr2	152093425	152093625	+	648.833374	f1_balb.idr|f1_c57bl6.idr	exon (NM_001160410, exon 2 of 2)	exon (NM_001160410, exon 2 of 2)	11996.0	NM_001160410	545474.0	Mm.214317	NM_001160410	ENSMUSG00000060257	Scrt2	AW060659	scratch family zinc finger 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-25411602-4	chr10	25411493	25411693	+	839.1375119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013511, intron 1 of 19)	intron (NM_013511, intron 1 of 19)	3225.0	NM_013511	13822.0	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-61076681-2	chr18	61076581	61076781	+	658.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008809, intron 15 of 22)	intron (NM_008809, intron 15 of 22)	-28891.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-126792237-2	chr6	126792147	126792347	+	598.0	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-51573.0	NM_013568	16494.0	Mm.62535	NM_013568	ENSMUSG00000038077	Kcna6	Kv1.6|MK1.6	potassium voltage-gated channel, shaker-related, subfamily, member 6	protein-coding	2.17427713012792	1.2670252250676	2.24876646047552	1.46505215850753	2.98415567171429	1.57794103452934	3.50443865062247	2.19113059145386	1.90676511436909	0.0472846159475464	0.315295010451276
Merged-chr10-3367382-2	chr10	3367282	3367482	+	644.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133485, intron 1 of 3)	intron (NM_133485, intron 1 of 3)	1232.0	NM_133485	76142.0	Mm.308126	NM_133485	ENSMUSG00000040653	Ppp1r14c	6330514J04Rik|KEPI	protein phosphatase 1, regulatory (inhibitor) subunit 14c	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-70021616-2	chr16	70021516	70021716	+	642.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17B|LTR|ERVK	-157872.0	NM_173069	224318.0	Mm.212743	NM_173069	ENSMUSG00000063163	Speer2	SPEER-2	spermatogenesis associated glutamate (E)-rich protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-104383716-2	chr8	104383616	104383816	+	743.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153582, intron 1 of 3)	intron (NM_153582, intron 1 of 3)	12091.0	NM_153582	97487.0	Mm.29658	NM_153582	ENSMUSG00000096188	Cmtm4	Cklfsf4|D19397|Gm9853	CKLF-like MARVEL transmembrane domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-3404616-4	chr9	3404522	3404722	+	931.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027545, intron 1 of 17)	intron (NM_027545, intron 1 of 17)	537.0	NM_027545	244672.0	Mm.245482	NM_027545	ENSMUSG00000025898	Cwf19l2	3230401L03Rik|9030209E10	CWF19-like 2, cell cycle control (S. pombe)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-5509972-4	chr6	5509879	5510079	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13701.0	NM_013743	27273.0	Mm.235547	NM_013743	ENSMUSG00000019577	Pdk4	AV005916	pyruvate dehydrogenase kinase, isoenzyme 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96764813-2	chr3	96764713	96764913	+	891.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026406, intron 3 of 8)	intron (NM_026406, intron 3 of 8)	37202.0	NM_026406	67845.0	Mm.386792	NM_026406	ENSMUSG00000028098	Rnf115	2610028E05Rik|AU042696|Zfp364	ring finger protein 115	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-102588839-4	chr4	102588731	102588931	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177982, intron 1 of 9)	intron (NM_001177982, intron 1 of 9)	-1012.0	NM_001177981	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-53805159-2	chr11	53805059	53805259	+	692.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_033332, intron 3 of 3)	B3A|SINE|B2	34686.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-87568690-2	chr1	87568590	87568790	+	859.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111314, intron 1 of 14)	intron (NM_001111314, intron 1 of 14)	5180.0	NM_001111314	53972.0	Mm.435439	NM_019867	ENSMUSG00000026259	Ngef	Tims2|ephexin	neuronal guanine nucleotide exchange factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-22358576-3	chr16	22358452	22358652	+	764.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	63564.0	NR_153764	100043507.0		NR_153764		Gng5-ps	Gm15776	G protein subunit gamma 5, pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97365208-1	chr11	97365108	97365308	+	687.0	f1_c57bl6.idr	intron (NM_138657, intron 1 of 9)	intron (NM_138657, intron 1 of 9)	2657.0	NM_138657	192157.0	Mm.34339	NM_138657	ENSMUSG00000038485	Socs7	2310063P06Rik|C85125|Nap4	suppressor of cytokine signaling 7	protein-coding	1.53621127220212	1.1034714984831	1.99429682616023	2.08570675643656	0.794343204184632	1.64441846495811	0.83550418120718	0.818904654415678	-2.35297357200136	0.0879258771983245	0.455892253511451
Merged-chr1-177986910-4	chr1	177986805	177987005	+	936.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4493.0	NR_155538	545391.0	Mm.442974	NM_001034899	ENSMUSG00000091476	Gm16432	EG545391|EG666250	predicted gene 16432	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-52427459-2	chr2	52427359	52427559	+	602.333374	f1_balb.idr|f1_c57bl6.idr	TTS (NM_146123)	TTS (NM_146123)	-2585.0	NM_182994	75423.0	Mm.314378	NM_182994	ENSMUSG00000036093	Arl5a	2410015N24Rik|2810410P22Rik|AA408731|AW610751|Arl5|T25534	ADP-ribosylation factor-like 5A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-76217581-4	chr11	76217474	76217674	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177367)	promoter-TSS (NM_177367)	-2.0	NM_177367	276919.0	Mm.482713	NM_177367	ENSMUSG00000049396	Gemin4	4932415L08Rik|AU015359	gem nuclear organelle associated protein 4	protein-coding	5.50951720830505	4.31390813462092	4.65086972532026	5.37003920631095	5.82394037431593	5.42099458050664	5.36145121862139	5.83306916449924	0.654673954259589	0.0463914300964616	0.311024475842019
Merged-chr10-12919456-4	chr10	12919364	12919564	+	981.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038028, intron 2 of 2)	intron (NR_038028, intron 2 of 2)	3663.0	NR_038027	320273.0	Mm.417706	NR_038027	ENSMUSG00000097378	B230208H11Rik	-	RIKEN cDNA B230208H11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-56938203-2	chr9	56938103	56938303	+	664.833374	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_133976, exon 1 of 1)	3' UTR (NM_133976, exon 1 of 1)	703.0	NM_133976	102462.0	Mm.12864	NM_133976	ENSMUSG00000032288	Imp3	1190002L16Rik|AI256594	IMP3, U3 small nucleolar ribonucleoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99891871-3	chr7	99891785	99891985	+	896.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164258, intron 8 of 18)	intron (NM_001164258, intron 8 of 18)	32667.0	NM_001164258	446101.0	Mm.440757	NM_001164258	ENSMUSG00000035211	Xrra1	AI449753	X-ray radiation resistance associated 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-54863248-3	chr11	54863079	54863279	+	854.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	-2588.0	NM_029327	75530.0	Mm.83578	NM_029327	ENSMUSG00000020268	Lyrm7	1700024C24Rik|9330147L21Rik	LYR motif containing 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-73529356-2	chr7	73529256	73529456	+	631.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081345, intron 2 of 38)	intron (NM_001081345, intron 2 of 38)	12390.0	NM_001081345	244059.0	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55651491-2	chr19	55651391	55651591	+	780.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045318, intron 2 of 3)	MLT1D|LTR|ERVL-MaLR	50713.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-86579817-4	chr9	86579733	86579933	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7780.0	NM_027100	69519.0	Mm.272517	NM_027100	ENSMUSG00000032417	Rwdd2a	1700030C20Rik|AI848608|Rwdd2	RWD domain containing 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-46461571-2	chr18	46461471	46461671	+	563.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4245.0	NR_045438	72076.0	Mm.82766	NM_028086		Mospd4	2010013H21Rik	motile sperm domain containing 4	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27772216-4	chr2	27772271	27772471	+	905.371216	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3b|LINE|CR1	61788.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-106964368-4	chr5	106964274	106964474	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009863)	promoter-TSS (NM_009863)	52.0	NM_009863	12545.0	Mm.20842	NM_009863	ENSMUSG00000029283	Cdc7	AI597260|Cdc7l1|muCdc7	cell division cycle 7 (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99088495-2	chr7	99088395	99088595	+	556.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 4 of 14)	intron (NM_178635, intron 4 of 14)	52649.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-126427835-3	chr2	126427737	126427937	+	695.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359975, intron 7 of 27)	intron (NM_001359975, intron 7 of 27)	63716.0	NM_001080944	241633.0	Mm.222235	NM_001080944	ENSMUSG00000060131	Atp8b4	Im	ATPase, class I, type 8B, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-24282569-1	chr19	24282469	24282669	+	797.0	f1_balb.idr	Intergenic	Intergenic	-1983.0	NM_008044	14297.0	Mm.7319	NM_008044	ENSMUSG00000059363	Fxn	FA|FARR|Frda|X25	frataxin	protein-coding	2.10743667048607	1.16088693116447	2.97701332075033	1.1061855334606	2.12650869240156	1.44756240228235	1.95345279809535	2.24379796216521	-0.299249935224596	0.789188926568641	0.998431161219273
Merged-chr1-152810839-4	chr1	152810786	152810986	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010877, intron 2 of 15)	intron (NM_010877, intron 2 of 15)	10733.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-22965619-4	chr2	22965511	22965711	+	973.591675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077190, intron 3 of 10)	intron (NM_001077190, intron 3 of 10)	70089.0	NM_001355467	56075.0	Mm.249752	NM_019501	ENSMUSG00000026784	Pdss1	2610203G20Rik|2700031G06Rik|TPT|TPT 1|Tprt|mDLP1|mSPS1	prenyl (solanesyl) diphosphate synthase, subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94958453-2	chr10	94958353	94958553	+	838.125	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13875.0	NM_018797	54712.0	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-13513975-4	chr1	13513874	13514074	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MuRRS-int|LTR|ERV1	75936.0	NM_028173	72265.0	Mm.28765	NM_028173	ENSMUSG00000025935	Tram1	1810049E02Rik|TRAMP	translocating chain-associating membrane protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-35741448-3	chr7	35741387	35741587	+	699.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178704, intron 3 of 18)	intron (NM_178704, intron 3 of 18)	12967.0	NM_178704	233115.0	Mm.257808	NM_178704	ENSMUSG00000043671	Dpy19l3	6030410G08|9330164H19Rik	dpy-19-like 3 (C. elegans)	protein-coding	0.670866962789892	0.319438566828969	0.312856690042079	0.728475496283451	0.865412652764886	0.320922269886485	0.314308361559973	0.937461562020818	0.759557444107705	0.688868017422572	1
Merged-chr8-46680825-1	chr8	46680725	46680925	+	832.0	f0_balb.idr	Intergenic	L1M6|LINE|L1	58690.0	NR_045750	100503498.0	Mm.187358	NR_045750	ENSMUSG00000097534	Gm16675	-	predicted gene, 16675	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-23786184-3	chr10	23786084	23786284	+	716.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_037680)	promoter-TSS (NR_037680)	-363.0	NR_037681	100529075.0		NR_037681	ENSMUSG00000080486	Snord100	MBII-429|Z51	small nucleolar RNA, C/D box 100	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-27203889-2	chr7	27203789	27203989	+	556.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001243888, exon 7 of 7)	exon (NM_001243888, exon 7 of 7)	-1647.0	NR_035422	100316839.0		NR_035422	ENSMUSG00000080533	Mir1191	Mirn1191|mmu-mir-1191|mmu-mir-1191a	microRNA 1191	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-84177579-2	chr12	84177479	84177679	+	866.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163501, intron 1 of 12)	intron (NM_001163501, intron 1 of 12)	16436.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-54502771-2	chr9	54502671	54502871	+	838.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1145.0	NM_172771	235380.0	Mm.93636	NM_172771	ENSMUSG00000041268	Dmxl2	6330586A12|6430411K14Rik|E130119P06Rik|mKIAA0856	Dmx-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-117580911-4	chr6	117580828	117581028	+	910.775024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	85693.0	NR_152214	100126203.0	Mm.217172	NR_152214		6820426E19Rik	Gm43983	RIKEN cDNA 6820426E19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128373607-4	chr2	128373481	128373681	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028591, intron 1 of 1)	intron (NR_028591, intron 1 of 1)	55770.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	0.387220839368964	0.419181447347656	0.933997393562599	0.895167837979943	0.838643681866311	0.421484458434539	1.54893541534956	0.40223070590516	1.02267148601435	0.56113430600692	0.960350977191929
Merged-chr14-32975475-2	chr14	32975375	32975575	+	743.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001146022, intron 49 of 58)	intron (NM_001146022, intron 49 of 58)	-15907.0	NM_001146021	67580.0	Mm.46115	NM_026253	ENSMUSG00000041673	Lrrc18	4930442L21Rik|MTLR1	leucine rich repeat containing 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127026212-8	chr7	127026062	127026262	+	865.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010772, intron 1 of 4)	intron (NM_010772, intron 1 of 4)	317.0	NM_010772	17188.0	Mm.378964	NM_010772	ENSMUSG00000030678	Maz	MAZI|PUR1|Pur-1|SAF-1|SAF-2	MYC-associated zinc finger protein (purine-binding transcription factor)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126852337-4	chr8	126852233	126852433	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_151740)	TTS (NR_151740)	3313.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-50813953-4	chr2	50813847	50814047	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-95737.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-139200330-2	chr4	139200239	139200439	+	845.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	6228.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	0.587909570964632	0.456156874617168	0.44685675133741	1.1270653420698	0.593066082750723	1.24904516948098	0.448915824278086	1.13554585448754	1.05531406280084	0.531577411903968	1
Merged-chr1-92666866-4	chr1	92666752	92666952	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-18011.0	NM_153114	260301.0	Mm.219545	NM_153114	ENSMUSG00000044055	Otos	OTOSP	otospiralin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-23841428-2	chr17	23841342	23841542	+	672.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_027644, intron 5 of 6)	intron (NM_027644, intron 5 of 6)	2714.0	NM_027644	71003.0	Mm.328839	NM_027644	ENSMUSG00000024114	Prss41	4931440B09Rik|Tessp-1|Tessp1	protease, serine 41	protein-coding	2.54724503030575	2.21688465329813	1.50471773372265	1.24249832338974	2.09586213183462	2.09906329160396	2.02952525184378	2.39512027983145	0.39340503296838	0.693950405740442	0.997569417625163
Merged-chr19-29824482-4	chr19	29824380	29824580	+	861.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11506.0	NM_177721	240614.0	Mm.125503	NM_177721	ENSMUSG00000074909	Ranbp6	C630001B19	RAN binding protein 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-88766268-4	chr5	88766176	88766376	+	741.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007832, intron 1 of 6)	intron (NM_007832, intron 1 of 6)	1263.0	NM_007832	13178.0	Mm.298892	NM_007832	ENSMUSG00000029366	Dck	-	deoxycytidine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5662484-2	chr19	5662384	5662584	+	805.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164480, intron 1 of 16)	intron (NM_001164480, intron 1 of 16)	1223.0	NM_001164482	20469.0	Mm.3072	NM_011379	ENSMUSG00000056917	Sipa1	Spa1	signal-induced proliferation associated gene 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-109367438-2	chr11	109367349	109367549	+	921.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_010303, intron 2 of 3)	intron (NM_010303, intron 2 of 3)	-3795.0	NR_038097	100036768.0	Mm.467767	NR_038097	ENSMUSG00000056687	Gm11696	-	predicted gene 11696	ncRNA	2.04319015986377	1.90477712487111	1.52532615046728	1.65764101969236	2.43055265924117	1.75363467878576	1.99644545134431	2.4107703183889	1.11989762483942	0.242181890418479	0.739349184581178
Merged-chr2-27727567-2	chr2	27727467	27727667	+	923.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290482, intron 1 of 9)	intron (NM_001290482, intron 1 of 9)	16984.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-67102964-3	chr6	67102825	67103025	+	810.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65518.0	NM_007836	13197.0	Mm.72235	NM_007836	ENSMUSG00000036390	Gadd45a	AA545191|Ddit1|GADD45	growth arrest and DNA-damage-inducible 45 alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-37814690-3	chr19	37814596	37814796	+	929.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	116888.0	NM_007811	13082.0	Mm.42230	NM_007811	ENSMUSG00000024987	Cyp26a1	Cyp26|P450RA|P450RAI|RAH	cytochrome P450, family 26, subfamily a, polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-154040375-3	chr1	154040256	154040456	+	873.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	140427.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-36531784-4	chr16	36531687	36531887	+	912.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013803, intron 1 of 6)	intron (NM_013803, intron 1 of 6)	30347.0	NM_013803	12374.0	Mm.103619	NM_013803	ENSMUSG00000051980	Casr	CaR|Gprc2a	calcium-sensing receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-22212451-3	chr10	22212353	22212553	+	932.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009018, intron 6 of 6)	intron (NM_009018, intron 6 of 6)	38551.0	NM_009018	19370.0	Mm.439724	NM_009018		Raet1c	RAE-1gamma	retinoic acid early transcript gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-45974828-4	chr13	45974727	45974927	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9836.0	NM_009124	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-52076442-4	chr11	52076393	52076593	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166654, intron 13 of 13)	intron (NM_001166654, intron 13 of 13)	-22331.0	NM_019411	19052.0	Mm.260288	NM_019411	ENSMUSG00000020349	Ppp2ca	PP2A|R75353	protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26532823-4	chr17	26532793	26532993	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24421.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-3537989-4	chr13	3537884	3538084	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008112)	promoter-TSS (NM_008112)	-91.0	NM_008112	14569.0	Mm.153226	NM_008112	ENSMUSG00000021218	Gdi2	GDI-B|GDIB|Gdi3	guanosine diphosphate (GDP) dissociation inhibitor 2	protein-coding	6.26449881493192	6.65969830989294	6.93642920714258	6.31825064194095	6.40661904898083	6.65057167680234	6.60106931774209	6.44712589226801	-0.0416941982713754	0.842863418702444	0.998431161219273
Merged-chr5-24475141-2	chr5	24475041	24475241	+	978.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359881, intron 1 of 15)	CpG	22964.0	NM_139153	213990.0	Mm.250703	NM_139153	ENSMUSG00000023353	Agap3	AGAP-3|AV028425|Centg3|Crag|Crag.|MRIP-1|cnt-g3	ArfGAP with GTPase domain, ankyrin repeat and PH domain 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-103795805-3	chr14	103795692	103795892	+	849.577759	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47909.0	NM_007904	13618.0	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-146221040-4	chr5	146220929	146221129	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001256086)	promoter-TSS (NM_001256086)	-58.0	NM_001256086	74132.0	Mm.26696	NM_028774	ENSMUSG00000029634	Rnf6	1200013I08Rik|5730419H05Rik|AA537053	ring finger protein (C3H2C3 type) 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-152209818-4	chr3	152209677	152209877	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355372)	promoter-TSS (NM_001355372)	306.0	NM_001356363	67035.0	Mm.46746	NM_025926	ENSMUSG00000028035	Dnajb4	1700029A20Rik|2010306G19Rik|5730460G06Rik	DnaJ heat shock protein family (Hsp40) member B4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-41606412-4	chr13	41606331	41606531	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163572, intron 1 of 2)	CpG	215.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-64481743-2	chr1	64481643	64481843	+	546.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-51061.0	NM_009952	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-38433298-2	chr12	38433198	38433398	+	553.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178681, intron 21 of 24)	Lx3_Mus|LINE|L1	181223.0	NR_045943	73867.0	Mm.78933	NR_045943	ENSMUSG00000112967	4930428E07Rik	-	RIKEN cDNA 4930428E07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-93955298-1	chr11	93955198	93955398	+	1000.0	f1_c57bl6.idr	intron (NM_001077529, intron 1 of 3)	intron (NM_001077529, intron 1 of 3)	485.0	NM_001077529	18103.0	Mm.1260	NM_008705	ENSMUSG00000020857	Nme2	NM23-H2|NM23B|nm23-M2	NME/NM23 nucleoside diphosphate kinase 2	protein-coding	1.7740324461991	3.06980871698759	2.15523527743016	4.15209461095223	2.73869420067375	2.8725353378394	1.42621771257323	3.06727762840798	-0.813240165203787	0.351516199569427	0.851869250625437
Merged-chr9-57066022-2	chr9	57065922	57066122	+	576.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045886, intron 1 of 2)	intron (NR_045886, intron 1 of 2)	5944.0	NR_045886	100038566.0	Mm.361900	NR_045886		Gm10658	-	predicted gene 10658	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-142612196-2	chr2	142612096	142612296	+	885.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR50|LTR|ERVL	289268.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-56265101-4	chr9	56264982	56265182	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172924, intron 3 of 6)	intron (NM_172924, intron 3 of 6)	-104012.0	NM_019793	56434.0	Mm.28484	NM_019793	ENSMUSG00000032324	Tspan3	1700055K04Rik|TM4-A|Tm4sf8	tetraspanin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-37176205-1	chr19	37176105	37176305	+	692.0	f1_balb.idr	promoter-TSS (NM_001290826)	promoter-TSS (NM_001290826)	-142.0	NM_001290826	208922.0	Mm.391176	NM_198300	ENSMUSG00000039652	Cpeb3	4831444O18Rik|CPE-BP3|mKIAA0940	cytoplasmic polyadenylation element binding protein 3	protein-coding	0.250811280172119	0.28719639324683	0.275561441935224	0.266400786249352	0.609291720499375	0.28978367037472	1.50327156600979	1.35061830076359	4.72245263437085	0.0107227460159492	0.114458635853522
Merged-chr2-166630517-2	chr2	166630417	166630617	+	590.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 5 of 39)	intron (NM_177782, intron 5 of 39)	65995.0	NR_152154	433503.0	Mm.491336	NR_152154		Gm29679	-	predicted gene, 29679	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28431495-2	chr7	28431395	28431595	+	811.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175021, intron 1 of 12)	intron (NM_175021, intron 1 of 12)	4696.0	NM_175021	233033.0	Mm.54120	NM_175021	ENSMUSG00000109336	Samd4b	BC042901	sterile alpha motif domain containing 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-120606481-2	chr2	120606381	120606581	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159609, intron 4 of 5)	intron (NM_001159609, intron 4 of 5)	2834.0	NM_025657	66606.0	Mm.428639	NM_025657	ENSMUSG00000027286	Lrrc57	2810002D13Rik|AA407405	leucine rich repeat containing 57	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-5221944-3	chr15	5221849	5222049	+	856.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME2|LINE|L1	22238.0	NM_001136079	19219.0	Mm.18509	NM_008965	ENSMUSG00000039942	Ptger4	EP4|Ptgerep4	prostaglandin E receptor 4 (subtype EP4)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105347190-4	chr8	105347135	105347335	+	890.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177699, intron 1 of 21)	intron (NM_177699, intron 1 of 21)	735.0	NM_177699	234686.0	Mm.87724	NM_177699	ENSMUSG00000014778	Fhod1	BC017144|FHOS|FHOS1	formin homology 2 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-83276435-7	chr17	83276281	83276481	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	61098.0	NM_134117	106522.0	Mm.311974	NM_134117	ENSMUSG00000024247	Pkdcc	AI115348|AW548124|Adtk1|ESTM17|MAd1|Sgk493|Vlk|X83346	protein kinase domain containing, cytoplasmic	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-103455184-3	chr15	103455095	103455295	+	844.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153505, intron 2 of 30)	intron (NM_153505, intron 2 of 30)	1370.0	NM_153505	105855.0	Mm.30805	NM_153505	ENSMUSG00000022488	Nckap1l	4930568P13Rik|AI463083|Hem1|Hemp1	NCK associated protein 1 like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-13890333-4	chr8	13890208	13890408	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025556)	promoter-TSS (NM_025556)	-37.0	NM_025556	66423.0	Mm.29063	NM_025556	ENSMUSG00000031458	Coprs	1700029I03Rik|2410022L05Rik|AA409325|AI256813|C85432|Copr5	coordinator of PRMT5, differentiation stimulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-87652866-4	chr1	87652738	87652938	+	992.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110192, intron 2 of 26)	intron (NM_001110192, intron 2 of 26)	32526.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-103409210-3	chr11	103409140	103409340	+	743.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183034, intron 1 of 11)	intron (NM_183034, intron 1 of 11)	3424.0	NM_183034	353047.0	Mm.18556	NM_183034	ENSMUSG00000034247	Plekhm1	AP162|B2|BC038943|D330036J23Rik	pleckstrin homology domain containing, family M (with RUN domain) member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-34776923-4	chr18	34776827	34777027	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081256)	promoter-TSS (NM_001081256)	-81.0	NM_001081256	277250.0	Mm.277906	NM_029518	ENSMUSG00000038773	Kdm3b	5830462I21Rik|JHDM2B|Jmjd1b|mKIAA1082	KDM3B lysine (K)-specific demethylase 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-60320389-4	chr3	60320282	60320482	+	896.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-152448.0	NM_001253713	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-65929554-4	chr3	65929471	65929671	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28678.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-41075526-2	chr13	41075426	41075626	+	628.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145802, intron 1 of 11)	intron (NM_001145802, intron 1 of 11)	4180.0	NM_001145803	17152.0	Mm.8149	NM_008547	ENSMUSG00000021363	Mak	A930010O05Rik	male germ cell-associated kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-74868522-6	chr17	74868505	74868705	+	845.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-136924.0	NM_019919	268977.0	Mm.269747	NM_019919	ENSMUSG00000001870	Ltbp1	9430031G15Rik|9830146M04|Ltbp-1|Ltbp1L|TGF-beta1-BP-1|Tgfb|b2b1000Clo	latent transforming growth factor beta binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-72318641-1	chr2	72318541	72318741	+	687.0	f0_balb.idr	intron (NM_023057, intron 2 of 19)	ERVL-int|LTR|ERVL	32940.0	NM_178084	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141598861-4	chr4	141598818	141599018	+	738.375	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133754, intron 1 of 8)	intron (NM_133754, intron 1 of 8)	1006.0	NM_001163256	74202.0	Mm.490327	NM_133754	ENSMUSG00000006219	Fblim1	2410043F08Rik|Cal|Fblp1|Gt10|migfilin|migfilin(s)	filamin binding LIM protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101379368-4	chr15	101379284	101379484	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9259.0	NM_028770	74127.0	Mm.440055	NM_028770	ENSMUSG00000037185	Krt80	1200016G03Rik|2310041I20Rik|Kb20	keratin 80	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-33003127-4	chr13	33003011	33003211	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1430.0	NM_009256	20723.0	Mm.245041	NM_009256	ENSMUSG00000045827	Serpinb9	BB283241|CAP-3|CAP3|PI-9|PI9|Spi6|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-80031402-4	chr8	80031307	80031507	+	932.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020259, intron 4 of 12)	intron (NM_020259, intron 4 of 12)	26601.0	NM_020259	15245.0	Mm.254493	NM_020259	ENSMUSG00000064325	Hhip	Hhip1	Hedgehog-interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-42876838-3	chr16	42876751	42876951	+	873.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1089.0	NR_040522	75722.0	Mm.243747	NR_040521	ENSMUSG00000075070	4932412D23Rik	Gm10809	RIKEN cDNA 4932412D23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-31053505-2	chr2	31053405	31053605	+	707.666626	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_019406, exon 9 of 9)	3' UTR (NM_019406, exon 9 of 9)	42995.0	NM_001177650	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-115993876-3	chr6	115993849	115994049	+	938.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026376, exon 1 of 36)	exon (NM_026376, exon 1 of 36)	1056.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-78429916-2	chr10	78429816	78430016	+	773.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4246.0	NM_007793	13014.0	Mm.6095	NM_007793	ENSMUSG00000005054	Cstb	AA960480|Stfb	cystatin B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-180704381-3	chr2	180704362	180704562	+	743.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291432, intron 1 of 5)	B1_Mur4|SINE|Alu	-2360.0	NM_175551	23856.0	Mm.253836	NM_011805	ENSMUSG00000038914	Dido1	6720461J16Rik|D130048F08Rik|DATF-1|DIO-1|Datf1|dido	death inducer-obliterator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28951882-4	chr17	28951777	28951977	+	982.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356299)	promoter-TSS (NM_001356299)	-559.0	NM_001356300	66989.0	Mm.435	NM_025888	ENSMUSG00000005936	Kctd20	2410004N11Rik|AI451943|AW541186|D17Ertd562e	potassium channel tetramerisation domain containing 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101155865-2	chr11	101155765	101155965	+	736.833313	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134028)	promoter-TSS (NM_134028)	-19.0	NM_134028	103768.0	Mm.142348	NM_134028	ENSMUSG00000045007	Tubg2	AI504772|Tubgl	tubulin, gamma 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-88701710-2	chr1	88701610	88701810	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_177305, exon 1 of 1)	5' UTR (NM_177305, exon 1 of 1)	481.0	NM_177305	320982.0	Mm.27968	NM_177305	ENSMUSG00000049866	Arl4c	A630084M22Rik|Arl7|LAK	ADP-ribosylation factor-like 4C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-173453913-2	chr2	173453813	173454013	+	827.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68679.0	NM_028158	72221.0	Mm.46132	NM_028158	ENSMUSG00000027518	1700021F07Rik	-	RIKEN cDNA 1700021F07 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-52063538-2	chr11	52063438	52063638	+	957.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166654, intron 13 of 13)	intron (NM_001166654, intron 13 of 13)	-35286.0	NM_019411	19052.0	Mm.260288	NM_019411	ENSMUSG00000020349	Ppp2ca	PP2A|R75353	protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-34199665-4	chr19	34199552	34199752	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360718, intron 1 of 10)	intron (NM_001360718, intron 1 of 10)	6718.0	NM_001360718	76630.0	Mm.130952	NM_029682	ENSMUSG00000024776	Stambpl1	1700095N21Rik|8230401J17Rik|ALMalpha|AMSH-FP	STAM binding protein like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-155049835-2	chr1	155049735	155049935	+	980.6666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	33429.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-21855498-4	chr10	21855374	21855574	+	961.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26710.0	NM_001161845	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191880353-4	chr1	191880265	191880465	+	728.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26416.0	NM_009579	22782.0	Mm.9024	NM_009579	ENSMUSG00000037434	Slc30a1	AI839647|C130040I11Rik|Znt1	solute carrier family 30 (zinc transporter), member 1	protein-coding	0.212799715495829	0.95688262253725	0.404900116278821	0.650240958105426	0.362181009646806	0.234187528763344	0.227645737042639	0.656261090974824	-1.35521441237703	0.46619699602308	1
Merged-chr3-41566171-4	chr3	41566048	41566248	+	986.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001130186, intron 1 of 10)	CpG	1268.0	NM_001130186	269424.0	Mm.286285	NM_172303	ENSMUSG00000025764	Jade1	AU041499|D530048A03Rik|Phf17|mKIAA1807	jade family PHD finger 1	protein-coding	1.35727640815966	1.16950558988702	1.38161136978348	0.957042840017266	1.17459558567443	1.32184214746505	0.983270871673081	0.960628599514853	-0.508658045665463	0.690963851374876	0.996768576110068
Merged-chr5-114597849-4	chr5	114597752	114597952	+	991.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004180, intron 2 of 2)	B4|SINE|B4	29601.0	NM_001004180	433940.0	Mm.194212	NM_001004180	ENSMUSG00000041930	Fam222a	-	family with sequence similarity 222, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-16856306-2	chr16	16856206	16856406	+	594.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13A|LTR|ERVK	7679.0	NM_001190325	16136.0	Mm.184441	NM_001190325	ENSMUSG00000075370	Igll1	BB139905|Igl-5|Igll|Lambda5	immunoglobulin lambda-like polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-106534637-2	chr8	106534537	106534737	+	831.56665	f1_balb.idr|f1_c57bl6.idr	intron (NM_007665, intron 2 of 15)	B3|SINE|B2	23785.0	NM_001037809	12560.0	Mm.4658	NM_007665	ENSMUSG00000061048	Cdh3	AI385538|Cadp|Cdhp|P-cadherin|Pcad	cadherin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-28071186-1	chr15	28071086	28071286	+	558.0	f1_balb.idr	Intergenic	Intergenic	-45338.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-136451356-1	chr4	136451256	136451456	+	602.0	f1_c57bl6.idr	Intergenic	PB1|SINE|Alu	-18405.0	NM_024452	269593.0	Mm.485824	NM_024452	ENSMUSG00000001089	Luzp1	2700072H04Rik|AI266952|Luzp|mFLJ00226	leucine zipper protein 1	protein-coding	-0.0290233728943017	-0.0131331480568793	0.430631895658868	0.277550082768241	0.116256518698243	-0.0119583703894844	0.655731548948093	-0.0216575809411268	0.30013245616249	0.887867509479219	1
Merged-chr2-33838579-2	chr2	33838479	33838679	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175184, intron 3 of 9)	intron (NM_175184, intron 3 of 9)	32763.0	NR_045729	320482.0	Mm.442057	NR_045729	ENSMUSG00000086484	Nron	A630071L07Rik|Gm24353	non-protein coding RNA, repressor of NFAT	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-77910136-4	chr9	77910031	77910231	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7234.0	NM_134255	68801.0	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-27227572-3	chr3	27227491	27227691	+	886.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 3 of 4)	B4A|SINE|B4	44587.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-56810984-2	chr19	56810884	56811084	+	666.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_170757, intron 1 of 14)	L1MA9|LINE|L1	2699.0	NM_170757	213993.0	Mm.469677	NM_170757	ENSMUSG00000035173	Ccdc186	1810028B20Rik|A630007B06Rik|AI159700|Otg1	coiled-coil domain containing 186	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84199740-2	chr8	84199640	84199840	+	875.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8778.0	NR_029740	387216.0		NR_029740	ENSMUSG00000065611	Mir23a	Mirn23a|mir-23a|mmu-mir-23a	microRNA 23a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119273551-3	chr11	119273512	119273712	+	756.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008064, intron 3 of 19)	intron (NM_008064, intron 3 of 19)	5649.0	NM_008064	14387.0	Mm.4793	NM_008064	ENSMUSG00000025579	Gaa	E430018M07Rik	glucosidase, alpha, acid	protein-coding	1.06244817503204	3.16251065486971	1.98028468949735	2.47586282130076	1.31217697854565	2.07334660653697	1.42292102628685	2.18823655233487	-1.33542303068179	0.205789542965394	0.693427149363077
Merged-chr8-121930201-4	chr8	121930111	121930311	+	816.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007608, intron 2 of 6)	RLTR20C2_MM|LTR|ERVK	14701.0	NM_007608	12352.0	Mm.116761	NM_007608	ENSMUSG00000025317	Car5a	CAV|Ca5a|Car5	carbonic anhydrase 5a, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-82838600-4	chr7	82838502	82838702	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER3|DNA|hAT-Charlie	-28731.0	NM_175366	108797.0	Mm.306789	NM_175366	ENSMUSG00000057706	Mex3b	4931439A04Rik|M-04814|Rkhd3|mKIAA2009	mex3 RNA binding family member B	protein-coding	2.1842482066908	1.50993222673741	2.12569323543264	2.15129722774279	0.958601189528328	2.22704916224722	1.01203483329836	0.990601200596869	-1.64726808529397	0.185869901434716	0.662265020019914
Merged-chr8-3225348-2	chr8	3225248	3225448	+	767.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001330056, intron 2 of 21)	intron (NM_001330056, intron 2 of 21)	54269.0	NM_010568	16337.0	Mm.268003	NM_010568	ENSMUSG00000005534	Insr	4932439J01Rik|CD220|D630014A15Rik|IR|IR-A|IR-B	insulin receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-144280830-2	chr2	144280730	144280930	+	559.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001289630, exon 5 of 5)	3' UTR (NM_001289630, exon 5 of 5)	9926.0	NM_001355688	74528.0	Mm.386817	NM_028984	ENSMUSG00000027424	Mgme1	8430406I07Rik|AI426476	mitochondrial genome maintenance exonuclease 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-102835433-7	chr14	102835294	102835494	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	147238.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-129400513-3	chr6	129400408	129400608	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019985, intron 2 of 5)	intron (NM_019985, intron 2 of 5)	3211.0	NM_001204239	56760.0	Mm.30700	NM_019985	ENSMUSG00000030159	Clec1b	1810061I13Rik|Clec-2|Clec2	C-type lectin domain family 1, member b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36706905-1	chr18	36706805	36707005	+	639.0	f1_balb.idr	Intergenic	Intergenic	-10980.0	NM_172831	240216.0	Mm.252323	NM_172831	ENSMUSG00000044719	E230025N22Rik	EG240216	Riken cDNA E230025N22 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-84617112-3	chr15	84617010	84617210	+	618.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR41A2|LTR|ERV1	-46096.0	NM_001346662	109270.0	Mm.291372	NM_146061	ENSMUSG00000036106	Prr5	AU043908|Arhgap8|C030017C09Rik|C78947|Protor-1|Protor1	proline rich 5 (renal)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-46669479-4	chr13	46669385	46669585	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033192)	promoter-TSS (NM_001033192)	-37.0	NM_001033192	97863.0	Mm.275934	NM_001033192	ENSMUSG00000069237	Fam8a1	C78339	family with sequence similarity 8, member A1	protein-coding	3.90218437485943	3.5713784385395	4.25165259835727	1.93553144941645	3.93249354053761	3.59776193828224	3.56170240780208	2.55406449574059	-0.224816960402018	0.73369133938047	0.998431161219273
Merged-chr10-93273581-4	chr10	93273543	93273743	+	913.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001322265, intron 2 of 4)	intron (NM_001322265, intron 2 of 4)	37516.0	NM_001322268	13713.0	Mm.4454	NM_013508	ENSMUSG00000008398	Elk3	D430049E23Rik|Erp|Etrp|Net|Sap-2	ELK3, member of ETS oncogene family	protein-coding	3.69690739896436	2.83563693644424	3.93567500101049	2.13223775052675	4.2180456417737	3.1272640177231	3.33135921355598	2.79875286081748	0.240209508387651	0.721954525236708	0.998431161219273
Merged-chr10-80703317-2	chr10	80703217	80703417	+	962.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027829, intron 3 of 9)	intron (NM_027829, intron 3 of 9)	624.0	NM_027829	71564.0	Mm.35802	NM_027829	ENSMUSG00000055862	Izumo4	9030607L17Rik|AI550407	IZUMO family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122907964-1	chr8	122907864	122908064	+	992.0	f1_balb.idr	intron (NR_037865, intron 4 of 13)	intron (NR_037865, intron 4 of 13)	59590.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	1.50805541142967	1.96820553032143	1.90376032356035	2.07057227316997	1.35884447540858	1.98242916256091	1.91817496954037	2.08119071919338	-0.0411097616275342	0.967140516914739	0.998431161219273
Merged-chr2-119621735-2	chr2	119621635	119621835	+	709.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001042652, intron 1 of 9)	RLTR53_Mm|LTR|ERVK	-3230.0	NM_001042653	70645.0	Mm.246412	NM_001042653	ENSMUSG00000072980	Oip5	5730547N13Rik|Lint-25|Ms18b	Opa interacting protein 5	protein-coding	0.0963317946477719	0.113348981128842	0.10776945758398	0.719489557812525	0.471696256378631	0.114607381217301	0.285516353817142	0.631727471919435	0.642351777579302	0.754451616593922	1
Merged-chr10-19061386-2	chr10	19061286	19061486	+	845.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45976.0	NM_009397	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	0.21849599755513	0.735585088292843	0.69185059710141	0.226969381274894	0.219758232659967	0.745336315198357	0.701567663193937	0.227859514489932	0.0401147338551024	0.983679742724237	1
Merged-chr5-64505453-4	chr5	64505348	64505548	+	745.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28440.0	NR_045413	77382.0	Mm.366742	NR_045411	ENSMUSG00000105352	C030018K13Rik	-	RIKEN cDNA C030018K13 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-54809918-2	chr11	54809818	54810018	+	641.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-10001.0	NR_040284	432562.0	Mm.406948	NR_040284	ENSMUSG00000086789	Lyrm7os	Gm12228	LYR motif containing 7, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-97751741-3	chr3	97751648	97751848	+	831.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039376, intron 17 of 46)	CpG	16266.0	NM_178080	83679.0	Mm.129840	NM_031401	ENSMUSG00000038170	Pde4dip	4732458A06Rik|9430063L05Rik|C87016|D130016K21Rik|D3Bwg1078e|Usmg4|mKIAA0454	phosphodiesterase 4D interacting protein (myomegalin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-10838083-2	chr16	10837983	10838183	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162932, intron 1 of 1)	intron (NM_001162932, intron 1 of 1)	3024.0	NM_001162932	223970.0	Mm.325777	NM_001033278	ENSMUSG00000037991	Rmi2	A630055G03Rik|Gm537|Gm929	RecQ mediated genome instability 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-10997624-1	chr15	10997524	10997724	+	544.0	f1_c57bl6.idr	TTS (NM_008537)	TTS (NM_008537)	-3097.0	NM_053077	22293.0	Mm.138278	NM_053077	ENSMUSG00000022243	Slc45a2	Aim-1|Aim1|Dbr|Matp|Oca4|blanc-sale|bls|uw	solute carrier family 45, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-42679880-4	chr10	42679785	42679985	+	869.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172416, intron 1 of 5)	intron (NM_172416, intron 1 of 5)	969.0	NM_172416	14628.0	Mm.46636	NM_172416	ENSMUSG00000038280	Ostm1	1200002H13Rik|HSPC019|gl	osteopetrosis associated transmembrane protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-56266688-4	chr9	56266586	56266786	+	970.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172924, intron 3 of 6)	intron (NM_172924, intron 3 of 6)	-105616.0	NM_019793	56434.0	Mm.28484	NM_019793	ENSMUSG00000032324	Tspan3	1700055K04Rik|TM4-A|Tm4sf8	tetraspanin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-36072065-4	chr16	36071978	36072178	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027342)	promoter-TSS (NM_027342)	418.0	NM_001159421	381045.0	Mm.310434	NM_198645	ENSMUSG00000075229	Ccdc58	A930007B11Rik|AI413631	coiled-coil domain containing 58	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65361716-1	chr9	65361616	65361816	+	774.5	f0_balb.idr	intron (NM_001111145, intron 1 of 6)	intron (NM_001111145, intron 1 of 6)	656.0	NM_001111145	208080.0	Mm.291862	NM_001111145	ENSMUSG00000086228	Ubap1l	Gm514	ubiquitin-associated protein 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-32536513-4	chr17	32536404	32536604	+	998.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024442)	promoter-TSS (NM_024442)	-53.0	NM_001356302	70101.0	Mm.30504	NM_024442	ENSMUSG00000048440	Cyp4f16	2310021J05Rik|AI746515	cytochrome P450, family 4, subfamily f, polypeptide 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70894486-2	chr8	70894385	70894585	+	731.75	f1_balb.idr|f1_c57bl6.idr	TTS (NM_029751)	TTS (NM_029751)	1085.0	NR_106034	102465984.0		NR_106034	ENSMUSG00000098710	Mir7067	Gm28031|mmu-mir-7067	microRNA 7067	ncRNA	-1.43172712806865	-1.3992492906874	-1.40907085678131	-1.41713858359971	-0.932192548427885	-1.39712091634321	-1.40684746950024	-1.41569446435649	2.19283191591698	0.528233640655333	1
Merged-chr12-69184076-4	chr12	69183879	69184079	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025589)	promoter-TSS (NM_025589)	88.0	NM_025589	66483.0	Mm.379115	NM_025589	ENSMUSG00000049751	Rpl36al	2410038A03Rik|RPL36A	ribosomal protein L36A-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65033773-2	chr9	65033673	65033873	+	699.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028906, intron 1 of 20)	PB1D10|SINE|Alu	1315.0	NM_028906	74388.0	Mm.202749	NM_028906	ENSMUSG00000032393	Dpp8	2310004I03Rik|4932434F09Rik|AI666706|DPP VIII	dipeptidylpeptidase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-27390845-2	chr16	27390745	27390945	+	702.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025615, intron 1 of 9)	intron (NM_001025615, intron 1 of 9)	1889.0	NM_001289436	67501.0	Mm.258985	NM_026202	ENSMUSG00000038127	Ccdc50	C3orf6	coiled-coil domain containing 50	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-82459204-3	chr8	82459113	82459313	+	862.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56627.0	NM_008357	16168.0	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59145803-4	chr15	59145713	59145913	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63787.0	NM_144800	211401.0	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70000821-1	chr8	70000721	70000921	+	577.0	f1_c57bl6.idr	Intergenic	Intergenic	-4437.0	NM_145596	234366.0	Mm.270044	NM_145596	ENSMUSG00000036180	Gatad2a	1110066C11Rik|BC031407|C80248	GATA zinc finger domain containing 2A	protein-coding	1.4186561099459	2.362175703981	1.05523117866853	3.08242865466025	0.990881963305004	1.98794013057373	1.56380064642806	2.10440618940628	-1.18594383216521	0.29725578921045	0.800256161319442
Merged-chr2-160602629-2	chr2	160602529	160602729	+	867.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43268.0	NM_009408	21969.0	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-46965105-3	chr14	46965020	46965220	+	646.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037221, intron 2 of 12)	intron (NM_001037221, intron 2 of 12)	-10192.0	NR_105813	102465206.0		NR_105813	ENSMUSG00000099036	Mir378c	Gm27930|mmu-mir-378c	microRNA 378c	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-66863323-4	chr1	66863212	66863412	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007381)	promoter-TSS (NM_007381)	-3.0	NM_007381	11363.0	Mm.2445	NM_007381	ENSMUSG00000026003	Acadl	AA960361|AU018452|C79855|LCAD	acyl-Coenzyme A dehydrogenase, long-chain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-103274827-6	chr15	103274763	103274963	+	889.055542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019817, intron 1 of 8)	intron (NM_019817, intron 1 of 8)	1975.0	NM_001357748	56447.0	Mm.29473	NM_019817	ENSMUSG00000060992	Copz1	5930435A22Rik|AA407760|D4Ertd360e	coatomer protein complex, subunit zeta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-30111303-2	chr5	30111203	30111403	+	726.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001167879, intron 2 of 5)	intron (NM_001167879, intron 2 of 5)	-5217.0	NM_001256263	433868.0	Mm.450696	NM_001256263	ENSMUSG00000086815	3110082J24Rik	-	RIKEN cDNA 3110082J24 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-137030235-4	chr5	137030149	137030349	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039385)	promoter-TSS (NM_001039385)	-46.0	NM_001039385	381677.0	Mm.389697	NM_001039385	ENSMUSG00000037428	Vgf	Gm1052	VGF nerve growth factor inducible	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-4924200-3	chr18	4924103	4924303	+	905.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	111717.0	NR_045881	100038439.0	Mm.387569	NR_045881	ENSMUSG00000097043	Gm10556	-	predicted gene 10556	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-77562543-2	chr10	77562443	77562643	+	569.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008404, intron 14 of 15)	intron (NM_008404, intron 14 of 15)	-19112.0	NM_145925	108705.0	Mm.28853	NM_145925	ENSMUSG00000009291	Pttg1ip	1810010L20Rik|AI314311|AU018448|C79540|PBF	pituitary tumor-transforming 1 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-158208007-3	chr2	158207903	158208103	+	893.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001131021, intron 8 of 15)	intron (NM_001131021, intron 8 of 15)	15995.0	NR_036606	73399.0	Mm.416861	NR_036606	ENSMUSG00000078957	1700060C20Rik	-	RIKEN cDNA 1700060C20 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-143055069-2	chr2	143054969	143055169	+	664.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8000.0	NM_021335	20639.0	Mm.1323	NM_021335	ENSMUSG00000008333	Snrpb2	2810052G09Rik	U2 small nuclear ribonucleoprotein B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-11715162-2	chr16	11715062	11715262	+	668.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028964, intron 19 of 20)	intron (NM_028964, intron 19 of 20)	-64540.0	NR_126430	73761.0	Mm.39183	NR_126430		4833415N18Rik	-	RIKEN cDNA 4833415N18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-117516410-1	chr12	117516310	117516510	+	819.0	f0_c57.idr	promoter-TSS (NM_175930)	promoter-TSS (NM_175930)	-69.0	NM_175930	217944.0	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-105428208-3	chr2	105428143	105428343	+	728.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28924.0	NM_009037	19672.0	Mm.4876	NM_009037	ENSMUSG00000005973	Rcn1	Rcn	reticulocalbin 1	protein-coding	1.91127064015232	2.45092402753912	0.845540507546678	0.826268965098748	1.74082629528995	2.11087877435078	0.85093132562018	0.829683719050097	-0.530942081190766	0.82034127271205	0.998431161219273
Merged-chr7-132859253-4	chr7	132859150	132859350	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198017)	promoter-TSS (NM_198017)	25.0	NM_198017	109359.0	Mm.274824	NM_198017	ENSMUSG00000030965	Abraxas2	AA589499|AI853413|Abro1|C430003P19Rik|Fam175b	BRISC complex subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-29974171-2	chr5	29974071	29974271	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38943.0	NM_001314054	16193.0	Mm.1019	NM_031168	ENSMUSG00000025746	Il6	Il-6	interleukin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-117130390-2	chr4	117130301	117130501	+	823.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_013807, exon 12 of 15)	exon (NM_013807, exon 12 of 15)	3562.0	NM_013807	12795.0	Mm.259022	NM_013807	ENSMUSG00000028680	Plk3	Cnk|Fnk|PLK-3|PRK	polo like kinase 3	protein-coding	0.894382531969751	2.2913201037332	0.950180803915537	1.93404319261214	0.899789680078613	1.83210588365273	1.43007387503874	2.52340829181328	0.385692233464228	0.766176986216337	0.998431161219273
Merged-chr13-90527198-4	chr13	90527082	90527282	+	853.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME1|LINE|L1	378173.0	NM_001145879	435376.0	Mm.292579	NM_001145879	ENSMUSG00000078958	Atp6ap1l	EG435376	ATPase, H+ transporting, lysosomal accessory protein 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-25780805-4	chr14	25780710	25780910	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-11954.0	NM_001101433	71918.0	Mm.41904	NM_001101433	ENSMUSG00000055538	Zcchc24	2310047A01Rik	zinc finger, CCHC domain containing 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-31280454-4	chr9	31280365	31280565	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9064.0	NM_001101597	638580.0	Mm.373655	NM_001101597		Gm7244	EG638580	predicted gene 7244	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-25784479-3	chr8	25784398	25784598	+	826.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026121, intron 1 of 4)	intron (NM_026121, intron 1 of 4)	711.0	NM_026121	67384.0	Mm.118400	NM_026121	ENSMUSG00000037316	Bag4	2410112I15Rik|SODD	BCL2-associated athanogene 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-4601245-4	chr10	4601158	4601358	+	946.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10731.0	NM_001302532	13982.0	Mm.9213	NM_007956	ENSMUSG00000019768	Esr1	ER|ER-alpha|ERa|ERalpha|ESR|Estr|Estra|Nr3a1	estrogen receptor 1 (alpha)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117715372-4	chr10	117715279	117715479	+	963.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR30D_MM|LTR|ERV1	-4621.0	NM_001288586	17246.0	Mm.22670	NM_010786	ENSMUSG00000020184	Mdm2	1700007J15Rik|AA415488|Mdm-2	transformed mouse 3T3 cell double minute 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-43103005-2	chr9	43102905	43103105	+	864.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359232, intron 1 of 40)	intron (NM_001359232, intron 1 of 40)	2713.0	NM_001359232	69632.0	Mm.275266	NM_027144	ENSMUSG00000059495	Arhgef12	2310014B11Rik|AU019857|Larg|mKIAA0382	Rho guanine nucleotide exchange factor (GEF) 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-48787014-2	chr11	48786914	48787114	+	819.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-13346.0	NM_008143	14694.0	Mm.5305	NM_008143	ENSMUSG00000020372	Rack1	AL033335|GB-like|Gnb2-rs1|Gnb2l1|p205	receptor for activated C kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19308739-4	chr7	19308616	19308816	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347586, intron 1 of 4)	CpG	1329.0	NM_008036	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-79394736-4	chr14	79394642	79394842	+	986.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-3030.0	NM_145960	211253.0	Mm.35306	NM_145960	ENSMUSG00000022022	Mtrf1	A830062K05Rik|MtRF-1	mitochondrial translational release factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43656542-4	chr4	43656440	43656640	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026871)	promoter-TSS (NM_026871)	-95.0	NM_026871	68917.0	Mm.25285	NM_026871	ENSMUSG00000028470	Hint2	1190005L05Rik	histidine triad nucleotide binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-97579713-4	chr7	97579593	97579793	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177947)	promoter-TSS (NM_001177947)	-196.0	NM_001177947	66273.0	Mm.41583	NM_183251	ENSMUSG00000035642	Aamdc	1810020D17Rik|1810037D19Rik|LI2	adipogenesis associated Mth938 domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-59888189-4	chr4	59888065	59888265	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172468, intron 6 of 8)	intron (NM_172468, intron 6 of 8)	26891.0	NM_021053	30936.0	Mm.284433	NM_021053	ENSMUSG00000028386	Slc46a2	5430429N04Rik|Ly110|TSO-1C12|Tscot	solute carrier family 46, member 2	protein-coding	3.78206118836893	2.80640970228094	4.46676176643324	3.73222567500454	3.50470709524376	2.82930558948109	4.36741037560427	3.75102877719756	-0.138757102877811	0.809729753102908	0.998431161219273
Merged-chr4-70409844-2	chr4	70409744	70409944	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001313762, intron 1 of 33)	intron (NM_001313762, intron 1 of 33)	591.0	NM_001313762	214444.0	Mm.370777	NM_145990	ENSMUSG00000039298	Cdk5rap2	2900018K03Rik|an|mKIAA1633	CDK5 regulatory subunit associated protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44462170-4	chr9	44462129	44462329	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7462.0	NM_009476	22269.0	Mm.4453	NM_009476	ENSMUSG00000041523	Upk2	AW491716|UPII	uroplakin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-37594828-1	chr13	37594728	37594928	+	601.0	f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	-231210.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	3.48226181151371	3.64402050245578	3.58886536563516	2.37418567052068	2.74347355198492	2.17626716336339	3.08231637023808	2.03011165929646	-1.36110952572358	0.0548899006508038	0.344761543070179
Merged-chr5-38470064-4	chr5	38470039	38470239	+	923.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145559, intron 3 of 10)	intron (NM_145559, intron 3 of 10)	10167.0	NM_001102414	117591.0	Mm.260137	NM_145559	ENSMUSG00000005107	Slc2a9	Glut9|SLC2A9B|SLC2a9A	solute carrier family 2 (facilitated glucose transporter), member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-57899107-2	chr18	57899007	57899207	+	810.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009194, intron 4 of 26)	intron (NM_009194, intron 4 of 26)	20429.0	NM_009194	20496.0	Mm.399997	NM_009194	ENSMUSG00000024597	Slc12a2	9330166H04Rik|Nkcc1|mBSC2|sy-ns	solute carrier family 12, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-41707431-2	chr3	41707331	41707531	+	572.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_155540, intron 8 of 20)	L1M3d|LINE|L1	35083.0	NR_155540	67161.0	Mm.331001	NM_001081411	ENSMUSG00000059834	Sclt1	2610207F23Rik|4931421F20Rik|CAGGS-SB10|Tg(ACTB-sb10)1Dla|Tg(CAG-sb10)1Dla	sodium channel and clathrin linker 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-83004554-2	chr10	83004459	83004659	+	725.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021439, intron 1 of 2)	intron (NM_021439, intron 1 of 2)	19062.0	NM_021439	58250.0	Mm.360747	NM_021439	ENSMUSG00000034612	Chst11	1110020P09Rik|C4ST|C4ST-1|C4ST1|C4s	carbohydrate sulfotransferase 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-103915087-4	chr3	103915033	103915233	+	926.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001356556, exon 1 of 8)	exon (NM_001356556, exon 1 of 8)	1013.0	NM_172684	229675.0	Mm.29366	NM_172684	ENSMUSG00000044098	Rsbn1	C230004D03Rik|E330004N01|KDM9|Rosbin|Rsbn|Rsbp|mKIAA3002	rosbin, round spermatid basic protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91056788-2	chr16	91056688	91056888	+	591.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163695, intron 1 of 1)	intron (NM_001163695, intron 1 of 1)	12357.0	NM_001163695	74387.0	Mm.236220	NM_028905	ENSMUSG00000039851	4932438H23Rik	4931406G06Rik|AI550392	RIKEN cDNA 4932438H23 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88632306-4	chr3	88632161	88632361	+	847.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198913, intron 3 of 21)	intron (NM_001198913, intron 3 of 21)	10867.0	NM_001198912	16800.0	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141606079-4	chr4	141605984	141606184	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133754)	promoter-TSS (NM_133754)	-32.0	NM_133754	74202.0	Mm.490327	NM_133754	ENSMUSG00000006219	Fblim1	2410043F08Rik|Cal|Fblp1|Gt10|migfilin|migfilin(s)	filamin binding LIM protein 1	protein-coding	7.23731495563981	6.78156535247489	7.18916230715755	7.09241312652431	6.76287229723584	6.6382031249888	6.48378435979634	6.50686871572889	-0.51483252245276	0.00461744410065823	0.0630501832166512
Merged-chr11-49986827-4	chr11	49986739	49986939	+	782.450012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38492.0	NM_021540	59044.0	Mm.359004	NM_021540	ENSMUSG00000020376	Rnf130	2510042A13Rik|G1RZFP|G1rp|GOLIATH|GP	ring finger protein 130	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-181241074-4	chr2	181240989	181241189	+	814.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183162, intron 1 of 18)	intron (NM_183162, intron 1 of 18)	938.0	NM_183162	229003.0	Mm.315872	NM_183162	ENSMUSG00000027580	Helz2	PDIP1|Pric285|mKIAA1769|mPDIP1	helicase with zinc finger 2, transcriptional coactivator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-47358159-2	chr14	47358076	47358276	+	788.666626	f0_balb.idr|f1_balb.idr	Intergenic	MTD|LTR|ERVL-MaLR	-15684.0	NM_010705	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	2.2688493518244	3.87078527280823	4.08612371199677	2.60956153530419	3.46310563348742	4.48059928896509	5.09582449454716	4.60711124706502	1.50450977508586	0.00958033985930695	0.105907479390631
Merged-chr4-98109243-4	chr4	98109121	98109321	+	989.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010905, intron 10 of 10)	intron (NM_010905, intron 10 of 10)	274044.0	NM_053157	94043.0	Mm.331719	NM_053157	ENSMUSG00000028563	Tm2d1	2310026L18Rik|AA990549|Bbp	TM2 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-119615350-2	chr13	119615250	119615450	+	626.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8469.0	NM_020279	56838.0	Mm.143745	NM_020279	ENSMUSG00000074715	Ccl28	CCK1|MEC|Scya28	chemokine (C-C motif) ligand 28	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-84605599-3	chr16	84605513	84605713	+	761.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2B2|LTR|ERVL	-74176.0	NR_040537	78023.0	Mm.243853	NR_040537		4930529L06Rik	-	RIKEN cDNA 4930529L06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-108937588-2	chr9	108937488	108937688	+	656.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025407, intron 2 of 12)	B4A|SINE|B4	940.0	NM_025407	22273.0	Mm.335460	NM_025407	ENSMUSG00000025651	Uqcrc1	1110032G10Rik	ubiquinol-cytochrome c reductase core protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-102647222-4	chr4	102647062	102647262	+	997.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57319.0	NM_001177981	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152756639-3	chr1	152756533	152756733	+	697.600037	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081197, exon 2 of 2)	exon (NM_001081197, exon 2 of 2)	6082.0	NM_001081197	71281.0	Mm.158650	NM_001081197	ENSMUSG00000055547	Apobec4	4933431M11Rik	apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 4 (putative)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-8986512-2	chr3	8986412	8986612	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	17692.0	NM_001357073	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-98800561-2	chr12	98800461	98800661	+	806.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081191, intron 35 of 43)	intron (NM_001081191, intron 35 of 43)	29539.0	NM_001160108	75553.0	Mm.25549	NM_029334	ENSMUSG00000021012	Zc3h14	1010001P15Rik|1700016A15Rik|2700069A02Rik|AU014748	zinc finger CCCH type containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-115487016-3	chr8	115486929	115487129	+	852.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER57E1|LTR|ERV1	219865.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124448627-1	chr6	124448527	124448727	+	549.0	f0_balb.idr	intron (NM_001346656, intron 12 of 17)	intron (NM_001346656, intron 12 of 17)	14117.0	NM_001346656	232370.0	Mm.193701	NM_153508	ENSMUSG00000008153	Clstn3	CSTN3|Cs3|Cst-3|alc-beta	calsyntenin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-62838050-4	chr9	62837963	62838163	+	976.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033175)	promoter-TSS (NM_001033175)	-724.0	NM_001033175	76524.0	Mm.283636	NM_001033175	ENSMUSG00000032245	Cln6	1810065L06Rik|AW743417|D9Bwg1455e|nclf	ceroid-lipofuscinosis, neuronal 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72025669-4	chr6	72025569	72025769	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_046180, intron 1 of 2)	intron (NR_046180, intron 1 of 2)	16859.0	NR_046180	330350.0	Mm.246787	NR_046180	ENSMUSG00000108356	9130221F21Rik	9130221F21	RIKEN cDNA 9130221F21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-107888669-4	chr13	107888550	107888750	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 2 of 14)	CpG	1414.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191964351-4	chr1	191964239	191964439	+	932.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	C-rich|Low_complexity|Low_complexity	-13031.0	NM_001177900	74023.0	Mm.274393	NM_023727	ENSMUSG00000049353	Rd3	3322402L07Rik|rd-3|rd3	retinal degeneration 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128731163-4	chr10	128731084	128731284	+	837.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_016811, exon 11 of 24)	exon (NM_016811, exon 11 of 24)	12892.0	NM_016811	13139.0	Mm.291235	NM_016811	ENSMUSG00000025357	Dgka	80kDa|AW146112|Dagk1	diacylglycerol kinase, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-29231816-4	chr10	29231722	29231922	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20179.0	NM_001162537	212448.0	Mm.132789	NM_001162537	ENSMUSG00000004360	9330159F19Rik	-	RIKEN cDNA 9330159F19 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-24426767-4	chr5	24426670	24426870	+	982.258301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253892)	promoter-TSS (NM_001253892)	-751.0	NM_001253892	20535.0	Mm.4580	NM_009207	ENSMUSG00000028962	Slc4a2	Ae2|B3RP	solute carrier family 4 (anion exchanger), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90939955-4	chr2	90939870	90940070	+	974.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017368)	promoter-TSS (NM_017368)	-427.0	NM_198683	13046.0	Mm.29495	NM_017368	ENSMUSG00000005506	Celf1	1600010O03Rik|AA407467|Brunol2|CUG-BP|CUG-BP1|CUGBP|Cugbp1|D2Wsu101e|HNAB50|NAB50	CUGBP, Elav-like family member 1	protein-coding	1.10973782392814	1.50686405112761	1.33088457552412	1.01203908259121	1.11770845294596	1.51918177185504	1.34166184673931	1.01584892890112	0.039055783837422	0.974854287961272	0.998431161219273
Merged-chr3-87729501-2	chr3	87729401	87729601	+	827.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001003912, exon 31 of 40)	exon (NM_001003912, exon 31 of 40)	19122.0	NM_028971	74485.0	Mm.474494	NM_028971	ENSMUSG00000023084	Lrrc71	4933430H15Rik	leucine rich repeat containing 71	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-61367248-3	chr3	61367145	61367345	+	953.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028712, exon 1 of 1)	3' UTR (NM_028712, exon 1 of 1)	2738.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-116824747-4	chr4	116824626	116824826	+	749.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-3218.0	NM_146256	242642.0	Mm.279897	NM_146256	ENSMUSG00000043155	Hpdl	A830048M07Rik|BC034099|Gloxd1	4-hydroxyphenylpyruvate dioxygenase-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-27317732-3	chr3	27317648	27317848	+	862.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009425, intron 1 of 4)	GA-rich|Low_complexity|Low_complexity	671.0	NM_009425	22035.0	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167015294-4	chr2	167015207	167015407	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153065)	promoter-TSS (NM_153065)	-6.0	NM_153065	228889.0	Mm.295031	NM_153065	ENSMUSG00000017999	Ddx27	C86129	DEAD (Asp-Glu-Ala-Asp) box polypeptide 27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3834652-4	chr12	3834556	3834756	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271753, intron 1 of 22)	intron (NM_001271753, intron 1 of 22)	27496.0	NM_001271753	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-37843153-2	chr18	37843053	37843253	+	580.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001305981)	TTS (NM_001305981)	11507.0	NR_105945	102465592.0		NR_105945	ENSMUSG00000098706	Mir6979	Gm27524|mmu-mir-6979	microRNA 6979	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-27876618-4	chr15	27876513	27876713	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081302, intron 10 of 56)	intron (NM_001081302, intron 10 of 56)	149235.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97175927-4	chr6	97175846	97176046	+	945.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081111, exon 2 of 17)	exon (NM_001081111, exon 2 of 17)	3178.0	NM_001081111	232286.0	Mm.30893	NM_001081111	ENSMUSG00000030059	Tmf1	7030402D04Rik|Gm153|Tmf1`	TATA element modulatory factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150282190-4	chr4	150282056	150282256	+	878.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 1 of 22)	intron (NM_001085492, intron 1 of 22)	240.0	NM_001085492	68703.0	Mm.291274	NM_001085492	ENSMUSG00000039852	Rere	1110033A15Rik|AI414665|ARG|ARP|ATN1L|AW742570|Atr2|DNB1|eye<m03Jus>|eyes3|mKIAA0458	arginine glutamic acid dipeptide (RE) repeats	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132606043-5	chr4	132606046	132606246	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32900.0	NM_210071	14050.0	Mm.227733	NM_010166	ENSMUSG00000028886	Eya3	AI844637	EYA transcriptional coactivator and phosphatase 3	protein-coding	1.04163523395362	1.1726057304744	1.13161816279834	2.30054536489658	1.6547284360501	2.56891399745145	0.877570437295807	1.10461719534004	0.524491026891543	0.672860331443891	0.99440487726309
Merged-chr6-135362704-3	chr6	135362623	135362823	+	752.866638	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010128)	promoter-TSS (NM_010128)	-208.0	NM_010128	13730.0	Mm.182785	NM_010128	ENSMUSG00000030208	Emp1	I-8-09|TMP	epithelial membrane protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97363519-4	chr11	97363420	97363620	+	983.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138657, intron 1 of 9)	intron (NM_138657, intron 1 of 9)	969.0	NM_138657	192157.0	Mm.34339	NM_138657	ENSMUSG00000038485	Socs7	2310063P06Rik|C85125|Nap4	suppressor of cytokine signaling 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-52119864-2	chr12	52119764	52119964	+	660.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_029760, intron 3 of 10)	MLT1G|LTR|ERVL-MaLR	22118.0	NM_029760	76826.0	Mm.244781	NM_029760	ENSMUSG00000035142	Nubpl	2410170E07Rik	nucleotide binding protein-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35424781-4	chr17	35424678	35424878	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023124)	promoter-TSS (NM_023124)	-69.0	NM_023124	15019.0	Mm.486287	NM_023124		H2-Q8	H-2Q8|MMS10-T|Ms10t|Qa-2|Qa-8|Qa8	histocompatibility 2, Q region locus 8	protein-coding	3.84048565577954	4.55121216378863	3.48440966677767	3.54488821285174	3.5932210497511	3.79891323508501	2.30059500626205	3.00220945276313	-0.932571293467008	0.110560218038646	0.520793640554224
Merged-chr12-102175999-3	chr12	102175906	102176106	+	580.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172152, intron 2 of 16)	intron (NM_172152, intron 2 of 16)	47279.0	NM_172152	238384.0	Mm.312448	NM_172152	ENSMUSG00000041771	Slc24a4	A930002M03Rik|AW492432|NCKX4	solute carrier family 24 (sodium/potassium/calcium exchanger), member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-57684810-3	chr14	57684711	57684911	+	738.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-19855.0	NM_020506	57258.0	Mm.202747	NM_020506	ENSMUSG00000021952	Xpo4	B430309A01Rik|mKIAA1721	exportin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-51268696-2	chr2	51268596	51268796	+	564.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_040636, intron 1 of 2)	intron (NR_040636, intron 1 of 2)	26865.0	NR_040636	329404.0	Mm.417725	NR_040636	ENSMUSG00000086349	Gm13497	A730015I17	predicted gene 13497	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-95853088-2	chr11	95852988	95853188	+	647.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-5729.0	NR_045187	73906.0	Mm.399894	NR_045187	ENSMUSG00000086015	4833417C18Rik	-	RIKEN cDNA 4833417C18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-60712309-4	chr18	60712207	60712407	+	971.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001348100, intron 2 of 14)	intron (NM_001348100, intron 2 of 14)	15259.0	NM_001348103	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-15757307-2	chr6	15757207	15757407	+	749.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175088, intron 3 of 4)	Lx|LINE|L1	36646.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-45752269-4	chr17	45752173	45752373	+	918.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152153, intron 2 of 4)	intron (NR_152153, intron 2 of 4)	17767.0	NR_152153	433111.0	Mm.213441	NR_152153	ENSMUSG00000097727	F630040K05Rik	-	RIKEN cDNA F630040K05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-39612166-4	chr18	39612068	39612268	+	849.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-124923.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-129001578-4	chr6	129001456	129001656	+	939.091675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015455, intron 1 of 2)	B3|SINE|B2	8595.0	NR_015455	408064.0	Mm.172429	NR_015455		BC064078	-	cDNA sequence BC064078	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-100420059-3	chr3	100419969	100420169	+	821.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6336.0	NR_040543	73806.0	Mm.396549	NR_040543	ENSMUSG00000086923	4930406D18Rik	-	RIKEN cDNA 4930406D18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-90053742-2	chr9	90053642	90053842	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007801)	promoter-TSS (NM_007801)	-525.0	NM_007801	13036.0	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-109000931-4	chr9	109000825	109001025	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153430, intron 3 of 13)	intron (NR_153430, intron 3 of 13)	9023.0	NR_153430	270198.0	Mm.132391	NM_173019	ENSMUSG00000025648	Pfkfb4	C230090D14	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-88623711-3	chr10	88623609	88623809	+	907.305542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18557.0	NM_175418	109272.0	Mm.147208	NM_175418	ENSMUSG00000020061	Mybpc1	8030451F13Rik	myosin binding protein C, slow-type	protein-coding	1.48336225273996	1.44500667467401	2.42627046919737	1.36018242035661	1.93065669119038	2.94153998080492	2.62442827357837	1.1169113265936	1.33961410202881	0.209451313048433	0.69901822956075
Merged-chr8-8983316-3	chr8	8983203	8983403	+	619.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10B|LTR|ERVL	148985.0	NR_045854	71249.0	Mm.158635	NR_045854	ENSMUSG00000108848	4933430N04Rik	-	RIKEN cDNA 4933430N04 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-146517076-4	chr2	146516968	146517168	+	925.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5064.0	NM_001033348	241694.0	Mm.222310	NM_001033348	ENSMUSG00000037110	Ralgapa2	A230067G21Rik|AS250|BC053994|RGC2|pp250	Ral GTPase activating protein, alpha subunit 2 (catalytic)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-25271018-2	chr15	25270918	25271118	+	634.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	142746.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-22225646-4	chr17	22225575	22225775	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001205095)	promoter-TSS (NM_001205095)	-61.0	NM_001205095	240038.0	Mm.227945	NM_001205095	ENSMUSG00000096433	Zfp994	EG240038|Gm4944	zinc finger protein 994	protein-coding	4.02513320562739	4.37771881321912	3.14777498557294	4.07557173357816	3.85170849727302	4.64886279950328	4.10320385176801	2.03206667085415	-0.04967934063011	0.934251216494856	0.998431161219273
Merged-chr9-96325735-4	chr9	96325635	96325835	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	37980.0	NM_001357213	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	2.52214378165387	4.09584867487796	1.42971970229416	2.41850053035576	2.74810386649446	1.80529602264932	3.25849243576917	3.15603711126051	-0.246937060183648	0.777748504124476	0.998431161219273
Merged-chr17-24692594-4	chr17	24692485	24692685	+	964.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_023040)	TTS (NM_023040)	-2636.0	NM_011522	20974.0	Mm.26032	NM_011522	ENSMUSG00000007021	Syngr3	-	synaptogyrin 3	protein-coding	1.84911212749971	1.44349768093146	2.00372437866072	1.55115994037968	2.13444134942138	1.81744867716727	1.41450198336858	2.32424155225654	0.701522426679054	0.491315180831545	0.934520824196745
Merged-chr1-144268175-8	chr1	144268049	144268249	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-19045.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-55369760-4	chr13	55369653	55369853	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016758)	promoter-TSS (NM_016758)	21.0	NM_016758	51791.0	Mm.1426	NM_016758	ENSMUSG00000052087	Rgs14	RPIP1	regulator of G-protein signaling 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34343926-1	chr17	34343826	34344026	+	860.0	f1_balb.idr	intron (NM_010381, intron 1 of 3)	intron (NM_010381, intron 1 of 3)	719.0	NM_010381	100504404.0	Mm.15680	NM_010381		H2-Ea-ps	AI323765|E-alpha-f|H-2Ea|H2-Ea|I-Ealpha|Ia-3|Ia3|MHC-H2-Ea	histocompatibility 2, class II antigen E alpha, pseudogene	protein-coding	2.28074944002941	2.1038464210048	2.2774771458114	1.83512284524762	2.65571557026709	1.57102224305571	2.40079686414056	1.25445241357563	-0.0435113392697728	0.965150307597418	0.998431161219273
Merged-chr15-98832282-2	chr15	98832182	98832382	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016781)	promoter-TSS (NM_016781)	-774.0	NM_016781	19082.0	Mm.6670	NM_016781	ENSMUSG00000067713	Prkag1	AA571379|BB036179|Prkaac	protein kinase, AMP-activated, gamma 1 non-catalytic subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-53386914-4	chr15	53386805	53387005	+	924.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40722.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-27374828-2	chr14	27374658	27374858	+	813.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027871, intron 3 of 10)	AT_rich|Low_complexity|Low_complexity	13369.0	NM_001289688	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	-0.811871916059096	-1.15223696528766	-1.16265319256742	-1.17120939178942	-0.911301499403313	-1.14997972538381	-1.16029518702849	-1.16967783621951	-0.385190450359539	0.909269396991215	1
Merged-chr18-60382631-4	chr18	60382515	60382715	+	694.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001146275, exon 2 of 3)	5' UTR (NM_001146275, exon 2 of 3)	6586.0	NM_001146275	60440.0	Mm.261140	NM_021792	ENSMUSG00000054072	Iigp1	2900074L10Rik|AI046432|AW111922|Ifgga1|Iigp|Irga6	interferon inducible GTPase 1	protein-coding	2.52034465000225	2.96025780416932	1.45790151591037	3.39015290768374	2.30539504632855	3.69001079137164	3.07258938595711	1.92735360287534	0.294561391106894	0.728841889027805	0.998431161219273
Merged-chr14-9395776-3	chr14	9395671	9395871	+	737.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-488324.0	NR_030680	100042415.0	Mm.235938	NR_030680	ENSMUSG00000089686	Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167890241-2	chr2	167890141	167890341	+	779.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A0|LTR|ERVL-MaLR	-42086.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-39561127-3	chr12	39561013	39561213	+	858.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	476263.0	NM_007487	11861.0	Mm.12723	NM_007487	ENSMUSG00000047446	Arl4a	AI467555|Arl4	ADP-ribosylation factor-like 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-49796498-1	chr16	49796398	49796598	+	618.0	f0_balb.idr	Intergenic	Intergenic	-59156.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21918242-4	chr9	21918133	21918333	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001324531)	promoter-TSS (NM_001324531)	-50.0	NM_001324531	19340.0	Mm.260157	NM_031874	ENSMUSG00000019066	Rab3d	C130057E11Rik	RAB3D, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94771613-4	chr10	94771465	94771665	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029852, intron 13 of 15)	intron (NM_029852, intron 13 of 15)	82775.0	NM_029852	77048.0	Mm.296971	NM_029852	ENSMUSG00000020024	Cep83	2600001G24Rik|4921537D05Rik|5730513H21Rik|Ccdc41	centrosomal protein 83	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114884129-4	chr11	114884020	114884220	+	930.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5921.0	NM_001347654	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-66016325-4	chr5	66016209	66016409	+	894.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001127382)	TTS (NM_001127382)	-12024.0	NR_027961	231253.0	Mm.436542	NM_177679	ENSMUSG00000054598	9130230L23Rik	-	RIKEN cDNA 9130230L23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36069355-4	chr1	36069266	36069466	+	866.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015818, intron 1 of 1)	intron (NM_015818, intron 1 of 1)	966.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83587615-2	chr11	83587515	83587715	+	771.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_009139)	TTS (NM_009139)	5472.0	NM_009139	20305.0	Mm.137	NM_009139	ENSMUSG00000018927	Ccl6	MRP-1|Scya6|c10	chemokine (C-C motif) ligand 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-41084674-4	chr13	41084585	41084785	+	825.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4979.0	NM_001145802	17152.0	Mm.8149	NM_008547	ENSMUSG00000021363	Mak	A930010O05Rik	male germ cell-associated kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-34804537-2	chr2	34804437	34804637	+	662.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_013890, exon 8 of 8)	3' UTR (NM_013890, exon 8 of 8)	-4625.0	NM_145522	227746.0	Mm.158705	NM_145522	ENSMUSG00000070953	Rabepk	8430412M01Rik|9530020D24Rik|AV073337|C87311|Rab9p40	Rab9 effector protein with kelch motifs	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-112437474-1	chr14	112437374	112437574	+	948.0	f1_balb.idr	Intergenic	ORR1A1|LTR|ERVL-MaLR	762359.0	NM_198865	75409.0	Mm.235097	NM_029273	ENSMUSG00000033214	Slitrk5	2610019D03Rik	SLIT and NTRK-like family, member 5	protein-coding	0.836905952944079	0.788887194637195	0.301237973516493	0.296327344501162	0.848316358153724	0.501160687177979	0.302642284176999	0.459798432400316	-0.242295980242824	0.894165439596965	1
Merged-chr1-84238183-2	chr1	84238083	84238283	+	860.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001003948, intron 1 of 2)	ORR1E|LTR|ERVL-MaLR	-19222.0	NR_105771	102465181.0		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141092446-4	chr7	141092294	141092494	+	957.741699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_023059, exon 7 of 10)	exon (NM_023059, exon 7 of 10)	8152.0	NM_023059	24058.0	Mm.38017	NM_023059	ENSMUSG00000025494	Sigirr	AI256711|TIR8	single immunoglobulin and toll-interleukin 1 receptor (TIR) domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115646690-2	chr11	115646590	115646790	+	967.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001313936, intron 5 of 5)	intron (NM_001313936, intron 5 of 5)	-18395.0	NM_001252395	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-40978854-4	chr13	40978737	40978937	+	989.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155347, intron 1 of 4)	MER2|DNA|TcMar-Tigger	-22173.0	NM_026550	68083.0	Mm.24789	NM_026550	ENSMUSG00000038683	Pak1ip1	5830431I15Rik|5930415H02Rik|AA419825|AI314040|AW556169|Gdpd1|PIP1	PAK1 interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102433436-1	chr12	102433336	102433536	+	700.0	f1_c57bl6.idr	intron (NM_011175, intron 1 of 13)	intron (NM_011175, intron 1 of 13)	6377.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	-1.11758580890538	-1.09561244780163	-0.935877143727864	-1.11444188675925	-1.11711893381234	-0.748982656775893	-0.931641680093118	-1.11404538160657	1.53613634523626	0.609979665275947	1
Merged-chr10-111673039-9	chr10	111672963	111673163	+	978.607422	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-78790.0	NR_045344	71321.0	Mm.410785	NR_045344	ENSMUSG00000097082	4933440J02Rik	-	RIKEN cDNA 4933440J02 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6014777-2	chr19	6014677	6014877	+	614.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110504, intron 1 of 21)	intron (NM_001110504, intron 1 of 21)	470.0	NM_007600	12333.0	Mm.6221	NM_007600	ENSMUSG00000024942	Capn1	Capa-1|Capa1|mu-calpin	calpain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-50162462-2	chr11	50162362	50162562	+	959.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029745, intron 17 of 20)	intron (NM_029745, intron 17 of 20)	-12389.0	NM_026543	68067.0	Mm.40828	NM_026543	ENSMUSG00000020381	Mrnip	2900016G09Rik|3010026O09Rik|AI851514|AW475975	MRN complex interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-5099960-3	chr7	5099875	5100075	+	823.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16936.0	NM_001145013	192658.0	Mm.28764	NM_138954	ENSMUSG00000035191	Rfpl4	D7Ertd486e|Rfpl4a	ret finger protein-like 4	protein-coding	2.15567451168983	2.06358366093356	2.34010364183259	3.00080495955634	3.34797324121461	2.07846348478579	3.10981585099091	2.85045206446981	0.939689150823907	0.223879797222657	0.715278663343895
Merged-chr14-104027266-4	chr14	104027197	104027397	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045953)	promoter-TSS (NR_045953)	-155.0	NR_045953	73877.0	Mm.399172	NR_045953	ENSMUSG00000115727	4930432J09Rik	-	RIKEN cDNA 4930432J09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83704556-2	chr11	83704456	83704656	+	816.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081957, intron 1 of 2)	intron (NM_001081957, intron 1 of 2)	500.0	NM_001081957	100034251.0	Mm.24097	NM_001081957	ENSMUSG00000069792	Wfdc17	Amwap|Gm11428	WAP four-disulfide core domain 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-34225011-1	chr12	34224911	34225111	+	811.333313	f0_balb.idr	intron (NM_001271386, intron 19 of 27)	intron (NM_001271386, intron 19 of 27)	267340.0	NM_011658	22160.0	Mm.3280	NM_011658	ENSMUSG00000035799	Twist1	M-Twist|Pde|Ska10|Ska<m10Jus>|Twist|bHLHa38|pdt	twist basic helix-loop-helix transcription factor 1	protein-coding	-0.070889382762754	-0.0528657096524054	-0.0587454183538699	-0.0632981635466689	0.763547963994873	0.156090468278647	0.548419757656489	-0.0625017506967965	4.06382821490288	0.0652616579629502	1
Merged-chr10-120140417-4	chr10	120140320	120140520	+	928.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27455.0	NM_080446	117599.0	Mm.214703	NM_080446	ENSMUSG00000020228	Helb	AI447783|D10Ertd664e	helicase (DNA) B	protein-coding	-1.03224044282356	-0.528348676481903	-1.02497085245391	-1.02881515129378	-0.758703265733638	-1.01077896320256	-1.02233033167315	-1.02845414759798	-0.909622492857339	0.776854299466003	1
Merged-chr9-40192284-4	chr9	40192170	40192370	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030713)	promoter-TSS (NM_030713)	-46.0	NR_153114	80902.0	Mm.132196	NM_030713	ENSMUSG00000025602	Zfp202	C130037E22Rik|Znf202	zinc finger protein 202	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-85625893-2	chr15	85625793	85625993	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-44072.0	NM_009528	22422.0	Mm.306946	NM_009528	ENSMUSG00000022382	Wnt7b	Wnt-7b	wingless-type MMTV integration site family, member 7B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-99191199-4	chr13	99191102	99191302	+	867.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004149, intron 1 of 4)	intron (NM_001004149, intron 1 of 4)	6379.0	NM_001004149	238803.0	Mm.343207	NM_001004149	ENSMUSG00000050919	Zfp366	DC-SCRIPT|Znf366	zinc finger protein 366	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167059764-2	chr2	167059664	167059864	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033196, intron 2 of 13)	intron (NM_001033196, intron 2 of 13)	-3170.0	NR_138563	68949.0	Mm.391959	NM_001081005		Zfas1	1500012F01Rik|Zfos1	zinc finger, NFX1-type containing 1, antisense RNA 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-119000195-4	chr4	119000069	119000269	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38202.0	NM_133892	100470.0	Mm.26698	NM_133892	ENSMUSG00000024903	Lao1	AW990848	L-amino acid oxidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120767387-2	chr8	120767287	120767487	+	986.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28748.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-125381396-2	chr5	125381296	125381496	+	707.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8621.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33953418-2	chr16	33953318	33953518	+	565.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	13620.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-130666523-1	chr2	130666423	130666623	+	717.0	f1_balb.idr	Intergenic	ID4_|SINE|ID	-1318.0	NM_025922	16434.0	Mm.21399	NM_025922	ENSMUSG00000074797	Itpa	2010016I08Rik|AU020102|ITPase|Itp|NTPase	inosine triphosphatase (nucleoside triphosphate pyrophosphatase)	protein-coding	-1.22315906685268	-1.19557143632602	-1.20673282037136	-0.55836125556573	-1.22265483704505	-1.19315271784257	-1.20420612767407	-1.21425999345206	-2.67891099987134	0.437057736398543	1
Merged-chr18-80224496-4	chr18	80224400	80224600	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_025299, exon 4 of 4)	3' UTR (NM_025299, exon 4 of 4)	17633.0	NM_001042408	27366.0	Mm.172411	NM_025299	ENSMUSG00000057130	Txnl4a	D18Wsu98e|Dim1|Txnl4|U5-15kD|U5-15kDa	thioredoxin-like 4A	protein-coding	5.35887281496218	5.63362921706318	5.66694766794122	5.09951775017947	6.91708333823673	6.94720456035442	6.33494981279841	6.84016986938713	1.45037884878636	8.53593962365757e-10	1.40936977437583e-07
Merged-chr6-28622682-4	chr6	28622594	28622794	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019776, intron 10 of 23)	intron (NM_019776, intron 10 of 23)	142346.0	NM_019776	56463.0	Mm.439987	NM_019776	ENSMUSG00000001424	Snd1	AL033314|Tudor-SN	staphylococcal nuclease and tudor domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-70842719-8	chr9	70842619	70842819	+	950.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001324473, intron 1 of 8)	MIR3|SINE|MIR	92089.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19002184-2	chr7	19002084	19002284	+	991.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_145579)	TTS (NM_145579)	-1881.0	NM_178757	272359.0	Mm.274237	NM_178757	ENSMUSG00000044030	Irf2bp1	6330414O09Rik|C530033F24	interferon regulatory factor 2 binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41015704-2	chr19	41015604	41015804	+	772.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4026.0	NR_155302	100861913.0	Mm.35204	NR_155302		C330026H20Rik	-	RIKEN cDNA C330026H20 gene	ncRNA	0.488489754682282	0.605012913224958	1.28726929198974	0.198877198184545	0.35559120021545	0.214968529035206	0.206910239343264	0.387121690482086	-2.7643580352593	0.138971668524689	1
Merged-chr5-135011606-2	chr5	135011506	135011706	+	759.666687	f1_balb.idr|f1_c57bl6.idr	TTS (NR_026688)	TTS (NR_026688)	1551.0	NR_026688	69812.0	Mm.18422	NR_026688	ENSMUSG00000085042	Abhd11os	2010001M06Rik|AI462243|Wbscr26|Wnscr26	abhydrolase domain containing 11, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-72263165-4	chr5	72263076	72263276	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_003966, intron 11 of 22)	intron (NR_003966, intron 11 of 22)	59833.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-12163308-2	chr5	12163208	12163408	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-219858.0	NM_028882	108151.0	Mm.89313	NM_028882	ENSMUSG00000040254	Sema3d	4631426B19Rik	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-20715508-2	chr16	20715408	20715608	+	577.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009900, intron 1 of 23)	L2b|LINE|L2	1128.0	NM_009900	12724.0	Mm.177761	NM_009900	ENSMUSG00000022843	Clcn2	AL118368|ClC-2|Clc2|nmf240	chloride channel, voltage-sensitive 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-33756197-2	chr6	33756097	33756297	+	647.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009148, intron 10 of 17)	intron (NM_009148, intron 10 of 17)	-273251.0	NM_028886	74354.0	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-119977914-4	chr9	119977817	119978017	+	905.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153287, intron 1 of 4)	intron (NM_153287, intron 1 of 4)	5106.0	NM_001357560	215418.0	Mm.491094	NM_153287	ENSMUSG00000032515	Csrnp1	4931429D10Rik|Axud1|CSRNP-1|URAX1|taip-3	cysteine-serine-rich nuclear protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-13961666-4	chr10	13961570	13961770	+	952.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-4405.0	NM_001358783	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	4.86427576372926	4.91559338082888	4.39798998246386	4.99731045003737	4.25073885450379	3.87270687802827	3.31732221731432	4.45233167000115	-0.976639441638398	0.0171863428486038	0.160426666102865
Merged-chr4-46393030-1	chr4	46392930	46393130	+	543.0	f1_balb.idr	TTS (NM_053149)	TTS (NM_053149)	-3593.0	NM_001347095	74753.0	Mm.45973	NM_029086	ENSMUSG00000028331	Trmo	5830415F09Rik|AV014846|Nap1	tRNA methyltransferase O	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-55053901-1	chr1	55053801	55054001	+	649.5	f1_balb.idr	intron (NM_026424, intron 1 of 3)	intron (NM_026424, intron 1 of 3)	1131.0	NM_001039710	67876.0	Mm.281019	NM_026424	ENSMUSG00000025981	Coq10b	1500041J02Rik|1700030I21Rik|9530077A17Rik|AV002237|AW742641	coenzyme Q10B	protein-coding	1.18382581960785	1.04647245332481	2.55753727786957	0.994341087312235	2.02939640818097	2.6770531196294	1.2933231611814	2.03943923853555	1.0811563551926	0.36220705425623	0.8580597646541
Merged-chr11-102408649-4	chr11	102408549	102408749	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1132.0	NM_026542	68066.0	Mm.44226	NM_026542	ENSMUSG00000018677	Slc25a39	3010027G13Rik|D11Ertd333e	solute carrier family 25, member 39	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-51854988-2	chr11	51854888	51855088	+	564.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357588, intron 1 of 12)	intron (NM_001357588, intron 1 of 12)	2493.0	NM_199299	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-63180789-2	chr1	63180689	63180889	+	595.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_018796)	TTS (NM_018796)	1766.0	NR_028558	100217464.0	Mm.484706	NR_028558	ENSMUSG00000064602	Snora41	MBI-83	small nucleolar RNA, H/ACA box 41	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34602050-2	chr17	34601950	34602150	+	722.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019403, intron 3 of 5)	intron (NM_019403, intron 3 of 5)	1511.0	NM_019403	54197.0	Mm.274542	NM_019403	ENSMUSG00000015478	Rnf5	2410131O05Rik|AA407576|NG2	ring finger protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-43446405-4	chr7	43446299	43446499	+	908.841675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_075104, intron 1 of 5)	intron (NR_075104, intron 1 of 5)	2327.0	NR_075104	110826.0	Mm.30200	NM_026695	ENSMUSG00000004610	Etfb	0610009I16Rik|2810441H06Rik	electron transferring flavoprotein, beta polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-66680156-4	chr15	66680036	66680236	+	843.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009375, intron 8 of 47)	intron (NM_009375, intron 8 of 47)	9366.0	NM_009375	21819.0	Mm.441333	NM_009375	ENSMUSG00000053469	Tg	Tgn|cog	thyroglobulin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-24462431-4	chr7	24462346	24462546	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011113)	promoter-TSS (NM_011113)	-37.0	NM_011113	18793.0	Mm.1359	NM_011113	ENSMUSG00000046223	Plaur	Cd87|u-PAR|uPAR	plasminogen activator, urokinase receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70300957-3	chr8	70300808	70301008	+	625.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024922, intron 2 of 12)	B1_Mus2|SINE|Alu	1544.0	NM_001024922	234374.0	Mm.388127	NM_001024922	ENSMUSG00000057788	Ddx49	R27090_2	DEAD (Asp-Glu-Ala-Asp) box polypeptide 49	protein-coding	-0.395409648034717	-0.522248656598698	-0.52572085558603	-0.52839094028775	-0.163567746391232	-0.521464205422034	0.0353492740213673	-0.527925039795433	2.50703981044107	0.337772411907532	1
Merged-chr2-109280712-4	chr2	109280624	109280824	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_139303)	promoter-TSS (NM_139303)	-14.0	NM_139303	228421.0	Mm.274086	NM_139303	ENSMUSG00000027115	Kif18a	AU024633|B130001M12Rik|gcd2	kinesin family member 18A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-96861139-1	chr11	96861039	96861239	+	731.0	f1_c57bl6.idr	TTS (NM_019877)	TTS (NM_019877)	10746.0	NR_029562	387170.0		NR_029562	ENSMUSG00000065515	Mir152	Mirn152|mir-152|mmu-mir-152	microRNA 152	ncRNA	0.476260344576132	1.14904998186349	0.494581904828389	1.05339906096933	0.769793829238863	0.713932499376775	0.49653673866477	1.25386838294926	0.0463405348041419	0.977825177953521	1
Merged-chr9-45314170-4	chr9	45314075	45314275	+	971.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4925.0	NM_001013373	214531.0	Mm.394987	NM_001013373	ENSMUSG00000037129	Tmprss13	BC010843|Tpmrss13	transmembrane protease, serine 13	protein-coding	4.03891027496928	3.62270674382405	4.27207932630737	2.34386289561627	2.84033497600008	1.55856833864475	2.05024909039016	2.51467821300681	-2.3318617807006	0.00170336803351742	0.0297626354361291
Merged-chr11-60936839-2	chr11	60936739	60936939	+	707.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008928, intron 1 of 11)	intron (NM_008928, intron 1 of 11)	4782.0	NM_008928	26397.0	Mm.18494	NM_008928	ENSMUSG00000018932	Map2k3	AW212142|MEK3|MKK3|Prkmk3|mMKK3b	mitogen-activated protein kinase kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-7470250-4	chr10	7470157	7470357	+	914.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029975, intron 1 of 5)	IAPEY4_LTR|LTR|ERVK	3220.0	NM_029975	77777.0	Mm.442442	NM_029975	ENSMUSG00000079685	Ulbp1	A430108B07Rik|MULT1	UL16 binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-76735667-2	chr11	76735612	76735812	+	553.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356321, intron 7 of 8)	intron (NM_001356321, intron 7 of 8)	27866.0	NM_016810	53334.0	Mm.20931	NM_016810	ENSMUSG00000010392	Gosr1	AI414660|AI426320|BB145494|GOS-28|GOSRI|GS28	golgi SNAP receptor complex member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-27438388-2	chr3	27438288	27438488	+	887.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356953, intron 24 of 26)	intron (NM_001356953, intron 24 of 26)	67037.0	NM_177330	208188.0	Mm.194721	NM_177330	ENSMUSG00000051136	Ghsr	C530020I22Rik|GHRP|GHS-R|Ghsr1a	growth hormone secretagogue receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-20969605-2	chr6	20969505	20969705	+	549.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-246504.0	NM_019697	16508.0	Mm.425316	NM_019697	ENSMUSG00000060882	Kcnd2	AI839615|AW555701|Kv4.2|R75121|mKIAA1044	potassium voltage-gated channel, Shal-related family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140740003-4	chr5	140739914	140740114	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173405, intron 2 of 7)	intron (NM_173405, intron 2 of 7)	15887.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126735860-2	chr8	126735760	126735960	+	701.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-113160.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-20640148-4	chr18	20640042	20640242	+	808.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155534, intron 1 of 2)	intron (NR_155534, intron 1 of 2)	-25108.0	NM_013697	22139.0	Mm.2108	NM_013697	ENSMUSG00000061808	Ttr	AA408768|AI787086|D17860|prealbumin	transthyretin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-30105078-2	chr5	30104978	30105178	+	937.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001167879)	promoter-TSS (NM_001167879)	-118.0	NM_001167879	242915.0	Mm.332287	NM_001167879	ENSMUSG00000044576	Garem2	Fam59b|Gareml|Gm444	GRB2 associated regulator of MAPK1 subtype 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-55652540-4	chr3	55652442	55652642	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030595, intron 49 of 57)	intron (NM_030595, intron 49 of 57)	-129968.0	NM_010750	17116.0	Mm.440209	NM_010750	ENSMUSG00000056947	Mab21l1	AW047968	mab-21-like 1 (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-53383225-2	chr9	53383125	53383325	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_212445)	promoter-TSS (NM_212445)	-798.0	NM_212445	68304.0	Mm.427519	NM_212445	ENSMUSG00000034487	Kdelc2	2010004J24Rik|4833410J10Rik|AW549401	KDEL (Lys-Asp-Glu-Leu) containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-126492354-3	chr10	126492237	126492437	+	946.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	218054.0	NR_105841	102465224.0		NR_105841	ENSMUSG00000098756	Mir378d	Gm27650|mmu-mir-378d	microRNA 378d	ncRNA	1.99607856646494	2.55226398241707	3.21467725081354	2.98337088734297	1.843856096853	2.25744479754631	3.01059750280517	2.83353854356445	-0.38606207486309	0.627601637311306	0.980912176761026
Merged-chr7-132994477-2	chr7	132994377	132994577	+	587.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001170744, intron 4 of 8)	intron (NM_001170744, intron 4 of 8)	20770.0	NM_001170744	13017.0	Mm.246240	NM_009980	ENSMUSG00000030970	Ctbp2	AA407280|D7Ertd45e|Gtrgeo6|Ribeye	C-terminal binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-117872728-4	chr5	117872612	117872812	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008712, intron 1 of 27)	intron (NM_008712, intron 1 of 27)	5873.0	NM_008712	18125.0	Mm.44249	NM_008712	ENSMUSG00000029361	Nos1	2310005C01Rik|N-NOS|NC-NOS|NO|NOS|NOS-I|Nos-1|bNOS|nNOS	nitric oxide synthase 1, neuronal	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-23015039-3	chr2	23014945	23015145	+	870.6555179999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077190, intron 1 of 10)	RMER17B|LTR|ERVK	25196.0	NM_001077192	11308.0	Mm.205647	NM_007380	ENSMUSG00000058835	Abi1	E3B1|NAP1|Ssh3bp1|abi-1	abl-interactor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-17185311-4	chr11	17185202	17185402	+	937.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024459, intron 2 of 5)	L1_Mur3|LINE|L1	26004.0	NM_024459	19058.0	Mm.41840	NM_024459	ENSMUSG00000033953	Ppp3r1	CaNB1|Cnb1|MCIP1	protein phosphatase 3, regulatory subunit B, alpha isoform (calcineurin B, type I)	protein-coding	3.23765763842526	3.33920361166166	4.83916614823339	2.05175102939083	4.82661100169864	4.85974007545403	5.14226962819398	4.81142738434057	1.51271208622759	0.0054380202074796	0.0711914840677048
Merged-chr7-16308672-4	chr7	16308578	16308778	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133234)	promoter-TSS (NM_133234)	-905.0	NM_133234	170770.0	Mm.7660	NM_133234	ENSMUSG00000002083	Bbc3	PUMA|PUMA/JFY1	BCL2 binding component 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-54921768-1	chr1	54921668	54921868	+	813.0	f0_balb.idr	intron (NM_001081433, intron 1 of 27)	intron (NM_001081433, intron 1 of 27)	4619.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-34815910-1	chr8	34815810	34816010	+	659.0	f1_c57bl6.idr	intron (NM_176933, intron 1 of 3)	intron (NM_176933, intron 1 of 3)	8300.0	NM_176933	319520.0	Mm.170276	NM_176933	ENSMUSG00000031530	Dusp4	2700078F24Rik|AI844617|BB104621|E130306H24Rik|MKP2	dual specificity phosphatase 4	protein-coding	2.44480185891161	2.10274180901986	3.49415563774591	2.98133353523282	2.34538617956702	2.11842575512886	3.52002651014381	2.81334015732761	-0.0856346145028175	0.911804102647681	0.998431161219273
Merged-chr16-91526158-2	chr16	91526058	91526258	+	614.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	1386.0	NR_105786	102465190.0		NR_105786	ENSMUSG00000099308	Mir6367	Gm27467|mmu-mir-6367	microRNA 6367	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-109859622-2	chr7	109859522	109859722	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_020052, intron 2 of 21)	intron (NM_020052, intron 2 of 21)	6057.0	NM_020052	56788.0	Mm.40447	NM_020052	ENSMUSG00000007279	Scube2	4932442O19Rik|Cegf1|Cegp1	signal peptide, CUB domain, EGF-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41830388-4	chr19	41830340	41830540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008043, exon 1 of 1)	exon (NM_008043, exon 1 of 1)	470.0	NM_008043	14296.0	Mm.4573	NM_008043	ENSMUSG00000067199	Frat1	AW060382	frequently rearranged in advanced T cell lymphomas	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-120008828-1	chr9	120008728	120008928	+	661.0	f1_balb.idr	Intergenic	Intergenic	14770.0	NM_011724	22437.0	Mm.10117	NM_011724	ENSMUSG00000079243	Xirp1	AI415219|Cmya1	xin actin-binding repeat containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-156841422-2	chr2	156841322	156841522	+	948.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291124, intron 1 of 3)	intron (NM_001291124, intron 1 of 3)	1415.0	NM_173396	228839.0	Mm.315625	NM_173396	ENSMUSG00000062175	Tgif2	4921501K24|5730599O09Rik|C80753|C81206	TGFB-induced factor homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-107885251-1	chr2	107885151	107885351	+	712.0	f1_balb.idr	Intergenic	RMER1A|Other|Other	594662.0	NM_021275	16492.0	Mm.142718	NM_021275	ENSMUSG00000042604	Kcna4	Kv1.4	potassium voltage-gated channel, shaker-related subfamily, member 4	protein-coding	-0.277257873296117	-0.408926756240418	-0.413069679700077	-0.250365534157603	-0.42077860513012	0.328235571921039	-0.412156072623029	-0.2475543536226	1.86873908293038	0.434530403332715	1
Merged-chr4-43453552-3	chr4	43453482	43453682	+	871.507935	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110321, intron 2 of 7)	intron (NM_001110321, intron 2 of 7)	1044.0	NM_001110320	12517.0	Mm.188157	NM_007654	ENSMUSG00000028459	Cd72	CD72c|Ly-19|Ly-32|Ly-m19|Lyb-2	CD72 antigen	protein-coding	-0.157175307795298	-0.211414219151588	-0.390222782312877	-0.392763985921099	-0.050470074825491	-0.0571810874727721	-0.389493601621602	-0.392321113629166	0.808162446595013	0.737848955623784	1
Merged-chr8-70609620-4	chr8	70609536	70609736	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1322.0	NM_133772	76900.0	Mm.6667	NM_133772	ENSMUSG00000070003	Ssbp4	1210002E11Rik|AW743380|Sspb4	single stranded DNA binding protein 4	protein-coding	5.46098337073481	5.14247592277719	5.27665515165704	4.85618979841454	5.69804694263425	5.40246163918023	5.70831520887192	5.65767460509005	0.481073592181568	0.0844637033633597	0.446298669826889
Merged-chr10-43220665-2	chr10	43220565	43220765	+	734.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001168289)	promoter-TSS (NM_001168289)	-821.0	NM_027772	71365.0	Mm.490430	NM_027772	ENSMUSG00000038240	Pdss2	5430420P03Rik|Gm60|Plmp|kd|mDLP1	prenyl (solanesyl) diphosphate synthase, subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-20091536-2	chr1	20091436	20091636	+	592.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153179, intron 63 of 66)	L1Md_F2|LINE|L1	-264918.0	NR_045734	75028.0	Mm.417820	NR_045734	ENSMUSG00000089914	4930486I03Rik	-	RIKEN cDNA 4930486I03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70051896-2	chr14	70051796	70051996	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028560, intron 6 of 6)	intron (NM_028560, intron 6 of 6)	-25549.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-128750040-3	chr1	128749960	128750160	+	836.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-157761.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-52591954-2	chr16	52591854	52592054	+	678.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2B|LINE|L1	-138873.0	NM_001331110	11658.0	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-82048150-3	chr6	82048051	82048251	+	919.355591	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145570, intron 1 of 2)	intron (NM_145570, intron 1 of 2)	6523.0	NM_145570	232146.0	Mm.489683	NM_145570	ENSMUSG00000035104	Eva1a	BC014699|Fam176a|Tmem166	eva-1 homolog A (C. elegans)	protein-coding	1.65695200740607	2.30320620135826	2.22213004735059	2.70178863560247	3.43173791845678	3.37451117865891	3.01070639860969	3.23749593106379	1.91290825139776	0.00772519080037338	0.0908547345556881
Merged-chr12-108334168-4	chr12	108334066	108334266	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010010)	promoter-TSS (NM_010010)	-150.0	NM_010010	13116.0	Mm.41911	NM_010010	ENSMUSG00000021259	Cyp46a1	CH24H|Cyp46	cytochrome P450, family 46, subfamily a, polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-7844614-4	chr6	7844494	7844694	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_052993)	promoter-TSS (NM_052993)	-630.0	NM_052993	94192.0	Mm.102752	NM_052993	ENSMUSG00000042460	C1galt1	2210410E06Rik|AV284120|T-synthase	core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70759714-2	chr8	70759614	70759814	+	867.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183170, intron 2 of 4)	MTE2a|LTR|ERVL-MaLR	1207.0	NM_183170	234384.0	Mm.213010	NM_183170	ENSMUSG00000035559	Mpv17l2	Fksg24	MPV17 mitochondrial membrane protein-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-29054056-4	chr17	29053950	29054150	+	976.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21390.0	NR_036613	20383.0	Mm.6787	NM_013663	ENSMUSG00000071172	Srsf3	AL024116|Sfrs3|X16	serine/arginine-rich splicing factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101284161-4	chr15	101284007	101284207	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026566)	promoter-TSS (NM_026566)	-194.0	NM_026566	68118.0	Mm.482360	NM_026566	ENSMUSG00000037204	Atg101	9430023L20Rik|AA407441|AU022967	autophagy related 101	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-23332926-4	chr16	23332818	23333018	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252505, intron 5 of 7)	intron (NM_001252505, intron 5 of 7)	42448.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141761785-4	chr4	141761690	141761890	+	963.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_172338)	TTS (NM_172338)	15115.0	NM_001081408	75986.0	Mm.30032	NM_001081408	ENSMUSG00000040706	Agmat	5033405N08Rik	agmatine ureohydrolase (agmatinase)	protein-coding	4.84516609336207	3.90643121029422	4.91951974835586	5.13177228154644	4.88042796442449	3.93658372641974	4.95365505800458	5.1542371111652	0.0369356921808311	0.926019657854876	0.998431161219273
Merged-chr14-67889987-4	chr14	67890004	67890204	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177780, intron 1 of 51)	intron (NM_177780, intron 1 of 51)	-30359.0	NR_105857	102465310.0		NR_105857	ENSMUSG00000098866	Mir6539	Gm27464|mir-6539|mmu-mir-6539	microRNA 6539	ncRNA	2.21961015067511	2.52690451666487	2.4327031254456	3.61654469338192	2.24076530125858	1.73865450171132	3.92646265750366	1.61499159658765	-0.0827846140612547	0.92615380647217	0.998431161219273
Merged-chr6-122571004-4	chr6	122570912	122571112	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17203.0	NM_009645	11628.0	Mm.391503	NM_009645	ENSMUSG00000040627	Aicda	Aid|Arp2	activation-induced cytidine deaminase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10100912-3	chr19	10100802	10101002	+	801.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019699, intron 1 of 11)	intron (NM_019699, intron 1 of 11)	601.0	NM_019699	56473.0	Mm.38901	NM_019699	ENSMUSG00000024665	Fads2	2900042M13Rik|Fadsd2	fatty acid desaturase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-15324262-1	chr19	15324162	15324362	+	545.0	f1_balb.idr	Intergenic	L1_Mus4|LINE|L1	600360.0	NM_001205339	107272.0	Mm.289936	NM_177420	ENSMUSG00000024640	Psat1	D8Ertd814e|EPIP|PSA|Psat	phosphoserine aminotransferase 1	protein-coding	0.929790488863038	0.101904535567273	0.0947171310451521	0.0891324723309697	0.945087511399578	0.319412677754953	0.0963072282516234	0.0901106459842791	0.276227206442278	0.897364601190527	1
Merged-chr2-173218558-4	chr2	173218458	173218658	+	887.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001139519, intron 1 of 3)	intron (NM_001139519, intron 1 of 3)	364.0	NM_021394	58203.0	Mm.116687	NM_021394	ENSMUSG00000027514	Zbp1	2010010H03Rik|Dai|Dlm1|mZaDLM	Z-DNA binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-32007018-4	chr5	32006917	32007117	+	872.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144541, intron 9 of 11)	MIRb|SINE|MIR	-129455.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	-2.05752322593321	-2.15521190974092	-2.16307242109104	-2.16952927915413	-2.17938029103484	-2.15350850414045	-2.16129297361887	-2.16837350464794	-0.683654500252594	0.846597994014493	1
Merged-chr16-92435017-3	chr16	92434940	92435140	+	735.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081549, intron 1 of 3)	intron (NM_001081549, intron 1 of 3)	31129.0	NM_001081549	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-7040328-4	chr10	7040224	7040424	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17139.0	NM_001033391	320495.0	Mm.331674	NM_001033391	ENSMUSG00000064065	Ipcef1	A130090K04Rik	interaction protein for cytohesin exchange factors 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-138731123-4	chr5	138731056	138731256	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23925.0	NM_030565	80752.0	Mm.320355	NM_030565	ENSMUSG00000025854	Fam20c	C76981|DMP-4|DMP4|GEF-CK|mKIAA4081	family with sequence similarity 20, member C	protein-coding	4.32968205695367	3.30239257468784	5.05448823208093	4.89747241200345	4.83855872312475	3.69478946643371	4.83037536936987	5.04927145219328	0.183115110026295	0.689829875029452	0.996533206832645
Merged-chr12-73111966-1	chr12	73111866	73112066	+	571.0	f0_balb.idr	intron (NM_001362272, intron 2 of 2)	CpG	1279.0	NM_011382	20474.0	Mm.249575	NM_011382	ENSMUSG00000034460	Six4	AI047561|AREC3|TrexBF	sine oculis-related homeobox 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-85329857-2	chr9	85329757	85329957	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2707.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80089596-2	chr7	80089496	80089696	+	790.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001146000, intron 5 of 5)	intron (NM_001146000, intron 5 of 5)	-14339.0	NR_045695	100859962.0	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-121176403-2	chr11	121176287	121176487	+	964.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16116.0	NM_145440	217369.0	Mm.20122	NM_145440	ENSMUSG00000039321	Uts2r	Gpr14|UR-2-R|UTR|UTR2	urotensin 2 receptor	protein-coding	1.86206893530448	3.13942215561465	2.20505464805296	2.95081050181663	2.65110799806907	2.29940051090028	2.97030844598789	3.32029537644283	0.428013573391586	0.577629255554139	0.96585843058813
Merged-chr17-36205834-7	chr17	36205847	36206047	+	912.857117	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-15796.0	NM_008208	15043.0	Mm.426002	NM_008208	ENSMUSG00000054128	H2-T3	H-2T3|H2-Tw3|MumuTL|TL	histocompatibility 2, T region locus 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-58710769-2	chr1	58710669	58710869	+	891.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289704)	promoter-TSS (NM_001289704)	-722.0	NR_149257	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3945983-2	chr19	3945883	3946083	+	661.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019449, intron 9 of 10)	intron (NM_019449, intron 9 of 10)	10797.0	NM_001161428	54445.0	Mm.262094	NM_019449	ENSMUSG00000036908	Unc93b1	Unc-93B1|Unc93b	unc-93 homolog B1 (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-95563424-4	chr9	95563330	95563530	+	860.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3613.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-51908761-4	chr13	51908668	51908868	+	949.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	62093.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-32514274-2	chr9	32514174	32514374	+	879.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008026, intron 1 of 8)	intron (NM_008026, intron 1 of 8)	27178.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-50369632-4	chr11	50369552	50369752	+	955.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8067.0	NM_021510	59013.0	Mm.21740	NM_021510	ENSMUSG00000007850	Hnrnph1	AI642080|E430005G16Rik|Hnrnph|Hnrph1	heterogeneous nuclear ribonucleoprotein H1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36022801-2	chr1	36022701	36022901	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-45599.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-97778702-2	chr15	97778602	97778802	+	611.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5663.0	NM_026353	67739.0	Mm.28955	NM_026353	ENSMUSG00000081534	Slc48a1	4930570C03Rik	solute carrier family 48 (heme transporter), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-100932384-4	chr3	100932267	100932467	+	900.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001165953, exon 7 of 7)	3' UTR (NM_001165953, exon 7 of 7)	9874.0	NM_001165953	229644.0	Mm.189351	NM_194343	ENSMUSG00000033233	Trim45	4921530N01Rik	tripartite motif-containing 45	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-48444216-2	chr11	48444116	48444316	+	544.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	-356144.0	NM_008143	14694.0	Mm.5305	NM_008143	ENSMUSG00000020372	Rack1	AL033335|GB-like|Gnb2-rs1|Gnb2l1|p205	receptor for activated C kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128578351-3	chr10	128578228	128578428	+	905.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010153, intron 12 of 27)	intron (NM_010153, intron 12 of 27)	6169.0	NR_105882	102465553.0		NR_105882	ENSMUSG00000098592	Mir6917	Gm27633|mmu-mir-6917	microRNA 6917	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-12050178-2	chr2	12050078	12050278	+	651.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-251068.0	NR_040353	338535.0	Mm.483275	NR_040353	ENSMUSG00000086843	E030013I19Rik	-	RIKEN cDNA E030013I19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-60206247-2	chr11	60206147	60206347	+	771.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001358314, exon 4 of 19)	exon (NM_001358314, exon 4 of 19)	-3920.0	NR_105887	102465556.0		NR_105887	ENSMUSG00000099259	Mir6922	Gm27269|mmu-mir-6922	microRNA 6922	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-171630363-2	chr2	171630247	171630447	+	749.5	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	332452.0	NR_040509	75655.0	Mm.396203	NR_040509	ENSMUSG00000086823	1700028P15Rik	-	RIKEN cDNA 1700028P15 gene	ncRNA	1.36205095698833	1.85414192922789	1.03439938831295	1.01578178230996	1.52225514030066	1.86901122676047	2.33051851203625	2.33006241519787	2.12696096302556	0.0654163219426483	0.383110167914689
Merged-chr9-121283788-2	chr9	121283704	121283904	+	898.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-6632.0	NM_177589	209012.0	Mm.371804	NM_177589	ENSMUSG00000040936	Ulk4	4932415A06Rik|A730098P15	unc-51-like kinase 4	protein-coding	-2.18375600819439	-2.15556918946382	-2.16409311609999	-2.17109492323169	-2.18177734563694	-2.01960173909294	-2.16216348594872	-2.16984160310277	0.759018020146679	0.829933115115583	1
Merged-chr18-15195990-2	chr18	15195890	15196090	+	841.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44544.0	NM_134112	106931.0	Mm.329299	NM_134112	ENSMUSG00000036225	Kctd1	4933402K10Rik|AI661543|AW553000	potassium channel tetramerisation domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-78261756-2	chr16	78261656	78261856	+	548.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6302.0	NR_045698	100503619.0	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180829987-4	chr1	180829879	180830079	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16374.0	NM_008210	15078.0	Mm.138832	NM_008210	ENSMUSG00000060743	H3f3a	EyeLinc14|H3.3A	H3 histone, family 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-59066868-4	chr12	59066767	59066967	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008891)	promoter-TSS (NM_008891)	-52.0	NM_008891	18949.0	Mm.22347	NM_008891	ENSMUSG00000020994	Pnn	AU045199|D12Ertd512e	pinin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-29248053-3	chr6	29247967	29248167	+	944.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-24421.0	NM_001190461	69573.0	Mm.45161	NM_023516	ENSMUSG00000043421	Hilpda	2310016C08Rik|AW049004|Hig2	hypoxia inducible lipid droplet associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-95644278-4	chr1	95644183	95644383	+	971.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159745, intron 3 of 3)	MIR3|SINE|MIR	23311.0	NM_009183	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-63319061-2	chr16	63318961	63319161	+	585.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11B|LTR|ERVK	464754.0	NM_011173	19128.0	Mm.127156	NM_011173	ENSMUSG00000022912	Pros1	AW214361	protein S (alpha)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-8769499-4	chr10	8769401	8769601	+	838.895874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 8 of 19)	intron (NM_175155, intron 8 of 19)	116569.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	1.80779055205312	3.46609944238303	2.26403858824511	1.90892236816458	2.31570064853397	1.85887779872645	1.98227478425561	2.07329424899753	-1.07032087072328	0.23391085866693	0.729582967665291
Merged-chr11-54437478-4	chr11	54437389	54437589	+	991.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173753)	promoter-TSS (NM_173753)	-690.0	NM_173753	216742.0	Mm.34087	NM_173753	ENSMUSG00000035992	Fnip1	A730024A03Rik|AI838773|AW557298	folliculin interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-38987052-1	chr1	38986952	38987152	+	677.0	f1_balb.idr	promoter-TSS (NM_026850)	promoter-TSS (NM_026850)	-762.0	NM_026850	68833.0	Mm.28121	NM_026850	ENSMUSG00000026078	Pdcl3	1110061A19Rik|C80025|Viaf1	phosducin-like 3	protein-coding	0.0542925123845309	0.462672002500013	-0.0973902737794081	-0.102688018608149	-0.110247128561152	-0.0890593286819316	0.942162283884911	-0.101759502607913	1.01173220954058	0.649674681805379	1
Merged-chr11-54691411-4	chr11	54691323	54691523	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175258, exon 26 of 28)	exon (NM_175258, exon 26 of 28)	95277.0	NM_001252497	192786.0	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97235097-3	chr6	97234986	97235186	+	741.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR30|LTR|ERV1	17694.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-104752133-4	chr12	104752037	104752237	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_148948)	promoter-TSS (NM_148948)	-185.0	NM_148948	192119.0	Mm.21135	NM_148948	ENSMUSG00000041415	Dicer1	1110006F08Rik|D12Ertd7e|mKIAA0928	dicer 1, ribonuclease type III	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-84260484-2	chr15	84260384	84260584	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133167, intron 1 of 12)	intron (NM_133167, intron 1 of 12)	28441.0	NM_133167	170736.0	Mm.323892	NM_133167	ENSMUSG00000022438	Parvb	AI595373|AW742462|D15Gsk1|affixin	parvin, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52658646-3	chr13	52658554	52658754	+	753.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61772.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-7884975-4	chr17	7884875	7885075	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41025.0	NM_145968	72536.0	Mm.119680	NM_145968	ENSMUSG00000033450	Tagap	2610315E15Rik|TRD|Tcd-1|Tcd1|Tcd1a|tcs-1|tcs1	T cell activation Rho GTPase activating protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-100270886-2	chr8	100270786	100270986	+	710.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	854212.0	NR_132435	234624.0	Mm.124595	NM_175479	ENSMUSG00000052479	A330008L17Rik	-	RIKEN cDNA A330008L17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46778311-4	chr8	46778237	46778437	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152560, intron 1 of 7)	intron (NR_152560, intron 1 of 7)	38592.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-67774835-4	chr18	67774717	67774917	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039088)	promoter-TSS (NM_001039088)	-59.0	NM_001360934	72124.0	Mm.307315	NM_028112	ENSMUSG00000079614	Seh1l	2610007A16Rik|AW540070|SEC13L|SEH1A|SEH1B|Seh1	SEH1-like (S. cerevisiae	protein-coding	4.53653187525874	3.74258525783302	4.86459318006235	3.5941071419849	4.00440533177746	3.57604331245509	4.08957781541372	3.23510999867059	-0.713554157480645	0.152955241610505	0.607154080646345
Merged-chr3-79172599-4	chr3	79172513	79172713	+	960.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26738.0	NM_001099624	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-11135416-2	chr16	11135316	11135516	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029582)	promoter-TSS (NM_029582)	-884.0	NM_029582	106200.0	Mm.291015	NM_029582	ENSMUSG00000022498	Txndc11	2810408E11Rik|AI427833|EFP1|Txdc11	thioredoxin domain containing 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-135825608-4	chr3	135825513	135825713	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001135150)	promoter-TSS (NM_001135150)	-44.0	NM_001135149	67547.0	Mm.30239	NM_026228	ENSMUSG00000053897	Slc39a8	4933419D20Rik|AA986696|BIGM103|ZIP-8|Zip8	solute carrier family 39 (metal ion transporter), member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-143093859-4	chr2	143093757	143093957	+	990.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15464.0	NM_020595	57329.0	Mm.157751	NM_020595	ENSMUSG00000027416	Otor	CDRAP|Fdp|MIA|MIAL	otoraplin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-41125221-2	chr5	41125121	41125321	+	589.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	582470.0	NM_001310592	100972.0	Mm.41555	NM_027295	ENSMUSG00000029128	Rab28	2700023P08Rik|AW496496	RAB28, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-54874963-3	chr12	54874863	54875063	+	942.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12086.0	NM_007688	12632.0	Mm.276826	NM_007688	ENSMUSG00000062929	Cfl2	-	cofilin 2, muscle	protein-coding	-0.0895793127227162	-0.211752942062003	-0.215896035174275	-0.219081157199288	0.232450092759675	-0.21081672151245	0.335131532859041	-0.0610712375785331	2.84698432646344	0.209591897767251	1
Merged-chr9-7763952-4	chr9	7763826	7764026	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133739)	promoter-TSS (NM_133739)	-151.0	NM_133739	71929.0	Mm.283293	NM_133739	ENSMUSG00000050912	Tmem123	2310075C12Rik	transmembrane protein 123	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-45121915-3	chr9	45121801	45122001	+	856.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001014761, intron 1 of 3)	intron (NM_001014761, intron 1 of 3)	4025.0	NM_001014761	72821.0	Mm.229373	NM_001014761	ENSMUSG00000070304	Scn2b	2810451E09Rik|AI840361|Gm183	sodium channel, voltage-gated, type II, beta	protein-coding	1.73309974238056	0.788173344916307	0.774467032799336	1.68766322948141	1.32101303156529	0.791233834713823	1.56564142096695	0.964205542777798	-0.526473437305586	0.717964541427058	0.998431161219273
Merged-chr7-46607904-4	chr7	46607805	46608005	+	979.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013789, intron 8 of 10)	intron (NM_013789, intron 8 of 10)	31902.0	NM_013789	27414.0	Mm.76659	NM_013789	ENSMUSG00000030839	Sergef	DelGEF|Gef|Gnef|Gnefr	secretion regulating guanine nucleotide exchange factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-45518872-2	chr17	45518772	45518972	+	757.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_198608, exon 19 of 22)	exon (NM_198608, exon 19 of 22)	-4562.0	NM_013688	21645.0	Mm.491193	NM_013688	ENSMUSG00000023949	Tcte1	D17Sil1|Tcte-1	t-complex-associated testis expressed 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-63897029-4	chr7	63896938	63897138	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021366, intron 1 of 1)	CpG	-19819.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	6.32913224612897	6.6905174922247	5.65684601848785	5.5727313201457	5.0029553877206	5.69138538353425	5.47041783775393	5.05811048524235	-0.907874768219945	0.00314325867061958	0.0469064894652908
Merged-chr4-15266147-3	chr4	15266048	15266248	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_181401, exon 1 of 3)	exon (NM_181401, exon 1 of 3)	328.0	NM_181401	100201.0	Mm.394111	NM_181401	ENSMUSG00000043252	Tmem64	9630015D15Rik|AI790744|AV300874	transmembrane protein 64	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-100492587-4	chr13	100492479	100492679	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_153794)	promoter-TSS (NR_153794)	30.0	NM_001360706	23894.0	Mm.272533	NM_022011	ENSMUSG00000021639	Gtf2h2	44kDa|BTF2 p44|BTF2-p44|Btf2p44|p44	general transcription factor II H, polypeptide 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-69791263-3	chr12	69791161	69791361	+	749.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183294)	promoter-TSS (NM_183294)	-554.0	NM_183294	71091.0	Mm.132325	NM_183294	ENSMUSG00000020990	Cdkl1	4933411O17Rik	cyclin-dependent kinase-like 1 (CDC2-related kinase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-158180943-4	chr2	158180836	158181036	+	863.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11072.0	NR_036606	73399.0	Mm.416861	NR_036606	ENSMUSG00000078957	1700060C20Rik	-	RIKEN cDNA 1700060C20 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95633528-2	chr3	95633428	95633628	+	987.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	8548.0	NM_001026212	56205.0	Mm.241365	NM_019561	ENSMUSG00000038619	Ensa	1700020C18Rik|2610007F17Rik|AI451924	endosulfine alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-105165213-2	chr4	105165113	105165313	+	982.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_080555, intron 1 of 5)	intron (NM_080555, intron 1 of 5)	7866.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-93101149-2	chr1	93101049	93101249	+	707.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001294149, intron 1 of 47)	intron (NM_001294149, intron 1 of 47)	725.0	NM_001294149	16560.0	Mm.276408	NM_008440	ENSMUSG00000014602	Kif1a	ATSV|C630002N23Rik|Gm1626|Kns1	kinesin family member 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-116084207-4	chr9	116084109	116084309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	91154.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	1.14356645196806	1.35766739325007	0.427918320495524	0.612632959971252	0.408328432818782	0.440522469517976	1.20309488041968	0.421280815558482	-1.26151833051208	0.47728972113961	0.927980290875356
Merged-chr2-157459131-2	chr2	157459031	157459231	+	649.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009271, intron 6 of 14)	intron (NM_009271, intron 6 of 14)	34838.0	NM_001025395	20779.0	Mm.22845	NM_009271	ENSMUSG00000027646	Src	AW259666|pp60c-src	Rous sarcoma oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-49772595-3	chr18	49772490	49772690	+	791.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16989.0	NM_026854	68857.0	Mm.96010	NM_026854	ENSMUSG00000024505	Dtwd2	1190002H09Rik|8030470C17Rik|AI414673|BB115449	DTW domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-11777415-3	chr19	11777318	11777518	+	766.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_152220)	TTS (NM_152220)	7003.0	NM_025606	94063.0	Mm.203928	NM_025606	ENSMUSG00000024683	Mrpl16	2310039D06Rik	mitochondrial ribosomal protein L16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30184829-1	chr7	30184729	30184929	+	633.0	f1_balb.idr	intron (NM_009944, intron 1 of 3)	PB1D10|SINE|Alu	658.0	NM_009944	12865.0	Mm.423030	NM_009944	ENSMUSG00000074218	Cox7a1	COX7A|COX7AH|COX7AM	cytochrome c oxidase subunit VIIa 1	protein-coding	1.73723314648675	2.10944068810098	2.96507307821827	2.25930568416729	2.62286448524249	2.28246269552945	2.56827116812002	1.99651641350236	0.0816207785940819	0.923761208643122	0.998431161219273
Merged-chr3-146812566-2	chr3	146812468	146812668	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_011100, intron 1 of 9)	CpG	378.0	NM_011100	18749.0	Mm.16766	NM_011100	ENSMUSG00000005034	Prkacb	CbPKA|Pkacb	protein kinase, cAMP dependent, catalytic, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-100740447-4	chr12	100740350	100740550	+	998.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15330.0	NM_153587	73086.0	Mm.220417	NM_153587	ENSMUSG00000021180	Rps6ka5	3110005L17Rik|6330404E13Rik|AI854034|MSK1|MSPK1|RLPK|RLSK|S6K-alpha-5	ribosomal protein S6 kinase, polypeptide 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-145142572-4	chr6	145142460	145142660	+	750.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008511, intron 3 of 18)	intron (NM_008511, intron 3 of 18)	-2915.0	NM_001361633	16970.0	Mm.843	NM_008511	ENSMUSG00000030263	Lrmp	D6Int3|D6Int4|D6Int5|D6Int7|D6Int8|Jaw1	lymphoid-restricted membrane protein	protein-coding	2.80483445523334	1.30838588354746	2.0676955723742	2.00831523659856	2.57824966268379	2.53518314772225	1.28335650893896	2.26513372543666	0.206731306208234	0.839592465395288	0.998431161219273
Merged-chr12-71836150-4	chr12	71836059	71836259	+	922.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026102, intron 1 of 25)	intron (NM_026102, intron 1 of 25)	5091.0	NM_172464	208846.0	Mm.87417	NM_026102	ENSMUSG00000034574	Daam1	-	dishevelled associated activator of morphogenesis 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70874852-2	chr8	70874752	70874952	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1362.0	NM_026964	234388.0	Mm.295791	NM_026964	ENSMUSG00000007721	Ccdc124	1810023B24Rik	coiled-coil domain containing 124	protein-coding	-0.26341228321052	-0.0570935699465277	-0.254190814344402	-0.257659156417954	0.384835148831001	0.249551241255701	-0.253198916524377	-0.257053400048198	2.84342242637162	0.239989578699395	1
Merged-chr2-25578121-2	chr2	25578021	25578221	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001005424, exon 1 of 1)	exon (NM_001005424, exon 1 of 1)	1978.0	NM_001005424	381353.0	Mm.379511	NM_001005424	ENSMUSG00000029419	Gm996	Ajm1	predicted gene 996	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-89003391-4	chr11	89003283	89003483	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009546, intron 1 of 8)	intron (NM_009546, intron 1 of 8)	3980.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-34817870-3	chr8	34817783	34817983	+	789.166687	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	intron (NM_176933, intron 3 of 3)	intron (NM_176933, intron 3 of 3)	10273.0	NM_176933	319520.0	Mm.170276	NM_176933	ENSMUSG00000031530	Dusp4	2700078F24Rik|AI844617|BB104621|E130306H24Rik|MKP2	dual specificity phosphatase 4	protein-coding	4.23480285022145	4.94170665405066	3.34209559673811	4.39946932349601	4.13198222059328	4.04746732544854	4.29743103439702	3.14279782798615	-0.493982218321828	0.317549201816864	0.820928684076605
Merged-chr2-13561403-4	chr2	13561295	13561495	+	988.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12916.0	NM_011701	22352.0	Mm.268000	NM_011701	ENSMUSG00000026728	Vim	-	vimentin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85421007-4	chr12	85420923	85421123	+	860.80835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46306.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-57245131-2	chr17	57245031	57245231	+	896.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030084, intron 3 of 16)	intron (NM_030084, intron 3 of 16)	2339.0	NM_001308074	78308.0	Mm.28468	NM_030084	ENSMUSG00000005823	Gpr108	1810015L19Rik|AA589464|C79132|Lustr2	G protein-coupled receptor 108	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-125065193-2	chr4	125065093	125065293	+	602.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175223, intron 1 of 5)	intron (NM_175223, intron 1 of 5)	464.0	NM_175223	75563.0	Mm.50304	NM_175223	ENSMUSG00000042707	Dnali1	1700023A09Rik|AW049135	dynein, axonemal, light intermediate polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-46741682-7	chr18	46741612	46741812	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001303015)	promoter-TSS (NM_001303015)	-133.0	NM_026217	67526.0	Mm.9852	NM_026217	ENSMUSG00000032905	Atg12	4931423H11Rik|A330058M13Rik|Apg12l|Atg12l	autophagy related 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-37213093-4	chr6	37212985	37213185	+	995.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347104, intron 1 of 32)	intron (NM_001347104, intron 1 of 32)	86891.0	NM_001081206	320127.0	Mm.119469	NM_001081206	ENSMUSG00000038665	Dgki	6430604M11Rik|C130010K08Rik	diacylglycerol kinase, iota	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-51101601-4	chr13	51101492	51101692	+	967.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029463)	promoter-TSS (NR_029463)	45.0	NM_001283029	20729.0	Mm.188432	NM_011462	ENSMUSG00000021395	Spin1	Spin	spindlin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-87649046-5	chr1	87648999	87649199	+	875.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110192, intron 2 of 26)	intron (NM_001110192, intron 2 of 26)	28787.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-58029741-2	chr1	58029641	58029841	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009676)	promoter-TSS (NM_009676)	-228.0	NM_009676	11761.0	Mm.26787	NM_009676	ENSMUSG00000063558	Aox1	AI196512|AI255253|Ao|Aox-1|Aox-2|Aox2|Moro|Ro	aldehyde oxidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-78451445-2	chr10	78451345	78451545	+	673.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172134, intron 3 of 10)	intron (NM_172134, intron 3 of 10)	-6288.0	NR_105873	102466762.0		NR_105873	ENSMUSG00000098279	Mir6908	Gm27827|mmu-mir-6908	microRNA 6908	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-63278348-3	chr13	63278275	63278475	+	769.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289926, intron 13 of 15)	intron (NM_001289926, intron 13 of 15)	18772.0	NR_045794	100504114.0	Mm.437070	NR_045794	ENSMUSG00000097242	Gm16907	-	predicted gene, 16907	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-55824207-4	chr4	55824110	55824310	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-291735.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-76410833-1	chr13	76410733	76410933	+	717.5	f0_balb.idr	intron (NM_030174, intron 1 of 20)	intron (NM_030174, intron 1 of 20)	25872.0	NM_030174	78771.0	Mm.316249	NM_030174	ENSMUSG00000021596	Mctp1	2810465F10Rik	multiple C2 domains, transmembrane 1	protein-coding	0.339417781011008	0.00556290023290493	0.532314720346453	-0.00256897864542557	0.127229190555776	0.00660270093457063	0.31098696438639	0.152043415516805	-0.737899472735643	0.71468617114554	1
Merged-chr13-73488890-4	chr13	73488798	73488998	+	966.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_145376, exon 3 of 14)	exon (NM_145376, exon 3 of 14)	21515.0	NM_145376	210992.0	Mm.284649	NM_145376	ENSMUSG00000021608	Lpcat1	2900035H07Rik|Aytl2|BB137372|BC005662|C87117|LPCAT|rd11	lysophosphatidylcholine acyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-47937665-4	chr19	47937538	47937738	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163267)	promoter-TSS (NM_001163267)	-74.0	NM_001163267	381229.0	Mm.300553	NM_001163267	ENSMUSG00000046585	Cfap58	Ccdc147|Gm969	cilia and flagella associated protein 58	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-44392873-3	chr18	44392778	44392978	+	742.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027490, intron 1 of 10)	intron (NM_027490, intron 1 of 10)	12378.0	NM_027490	70640.0	Mm.87629	NM_027490	ENSMUSG00000024472	Dcp2	2410015D23Rik|5730537H01Rik|AL118268	decapping mRNA 2	protein-coding	0.272939861886454	0.294504950977341	0.287465787693648	0.717511855010855	0.667248942438965	0.497368678858147	0.474092829295146	1.10487166732648	2.00337443517165	0.27330172702501	1
Merged-chr16-3234930-1	chr16	3234830	3235030	+	973.0	f1_balb.idr	Intergenic	Intergenic	-357468.0	NM_146860	258859.0	Mm.377723	NM_146860	ENSMUSG00000051003	Olfr161	MOR131-1|OR912-47M6	olfactory receptor 161	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-100084454-4	chr12	100084365	100084565	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27866.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-38701532-1	chr16	38701432	38701632	+	560.0	f0_c57.idr	intron (NM_020260, intron 1 of 11)	intron (NM_020260, intron 1 of 11)	11503.0	NM_020260	12549.0	Mm.370848	NM_020260	ENSMUSG00000022799	Arhgap31	5830477L08Rik|AU041750|Cdgap|D330026I07Rik	Rho GTPase activating protein 31	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-54963074-1	chr6	54962974	54963174	+	622.0	f0_c57.idr	intron (NM_172729, intron 1 of 11)	ORR1A4|LTR|ERVL-MaLR	8587.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-89858717-3	chr13	89858619	89858819	+	649.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028012, intron 7 of 7)	intron (NM_028012, intron 7 of 7)	-116207.0	NM_001134475	13003.0	Mm.158700	NM_019389	ENSMUSG00000021614	Vcan	5430420N07Rik|9430051N09|Cspg2|DPEAAE|NG2|PG-M|PG-M(V0)|PG-M(V1)|hdf	versican	protein-coding	-2.18138529563533	-2.15523716995652	-2.1631445789866	-2.16963996020037	-2.05513010215571	-2.15352360143315	-2.16135451490766	-2.16847729006863	0.759018020146679	0.829933115115583	1
Merged-chr6-5323540-3	chr6	5323456	5323656	+	872.466675	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13B1|LTR|ERVK	-25183.0	NM_183308	330260.0	Mm.126984	NM_183308	ENSMUSG00000032667	Pon2	6330405I24Rik|AI481612	paraoxonase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-76551883-2	chr12	76551783	76551983	+	619.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153804, intron 1 of 18)	intron (NM_153804, intron 1 of 18)	-3958.0	NR_046044	100504549.0	Mm.440349	NR_046044	ENSMUSG00000112388	AI463170	-	expressed sequence AI463170	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-48275095-4	chr17	48274973	48275173	+	977.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172623, exon 6 of 6)	3' UTR (NM_172623, exon 6 of 6)	10778.0	NM_001163796	224840.0	Mm.131234	NM_172623	ENSMUSG00000051682	Treml4	5031403H21Rik|BB137214|IDCP1|TLT-4|TLT4|Treml3	triggering receptor expressed on myeloid cells-like 4	protein-coding	3.65893627747805	2.40496985643476	3.12168288721353	3.56919390250251	2.68648212199316	3.15258982869217	4.119247072286	1.54055477385965	-0.137312662477476	0.858563276661978	0.998431161219273
Merged-chr3-136331318-4	chr3	136331217	136331417	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5251.0	NM_001033350	242248.0	Mm.30832	NM_001033350	ENSMUSG00000037922	Bank1	A530094C12Rik|AI451642|AVIEF|BANK	B cell scaffold protein with ankyrin repeats 1	protein-coding	2.5763490268486	2.5790585442632	2.79749885710147	2.00863011623729	2.06623923541596	1.73205267701752	3.37886102469799	2.01911963677197	-0.04626262150444	0.957244675418509	0.998431161219273
Merged-chr9-45055252-2	chr9	45055152	45055352	+	719.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001093749)	promoter-TSS (NM_001093749)	71.0	NM_001093749	319742.0	Mm.49611	NM_176993	ENSMUSG00000070305	Mpzl3	5430427F17Rik|A530065I17Rik|rc|ruf	myelin protein zero-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-34031589-1	chr15	34031489	34031689	+	810.333313	f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	-51130.0	NM_001357926	67154.0	Mm.130883	NM_026002	ENSMUSG00000022255	Mtdh	2610103J23Rik|3D3|3D3/Lyric|AEG-1|AV353288|D8Bwg1112e|Lyric	metadherin	protein-coding	2.21104212697768	2.75757400293202	2.41087614068304	2.33853960877762	1.67120036398581	1.19745414380559	1.16810512254049	1.58826468536357	-2.89668901556634	0.00609823067585084	0.077397642787932
Merged-chr9-78039238-4	chr9	78039148	78039348	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12710.0	NM_008103	14531.0	Mm.1400	NM_008103	ENSMUSG00000023333	Gcm1	GCMa|Gcm-rs2|Gcm1-rs1|glide	glial cells missing homolog 1	protein-coding	1.47943501770404	1.36617219620986	2.8286098065783	2.50459232750821	2.47865504131198	2.3510943875368	2.13716346811324	2.42197628846395	0.305541807915917	0.747644586461593	0.998431161219273
Merged-chr5-135970148-2	chr5	135970048	135970248	+	601.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001160366, intron 2 of 10)	intron (NM_001160366, intron 2 of 10)	4328.0	NM_001160366	109267.0	Mm.332750	NM_001160366	ENSMUSG00000029699	Ssc4d	C330016E03Rik|S4D-SRCRB|SRCRB-S4D|Srcrb4d	scavenger receptor cysteine rich family, 4 domains	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-9427739-2	chr17	9427639	9427839	+	662.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	241965.0	NM_001163836	67543.0	Mm.26987	NM_026226	ENSMUSG00000046173	Pabpc6	4932702K14Rik|AI428050|Pabpc3	poly(A) binding protein, cytoplasmic 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36298405-2	chr1	36298305	36298505	+	557.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9328.0	NM_001172206	214855.0	Mm.34316	NM_145996	ENSMUSG00000037447	Arid5a	D430024K22Rik|Mrf1	AT rich interactive domain 5A (MRF1-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-99247702-8	chr5	99247566	99247766	+	977.7589109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181318, intron 1 of 13)	intron (NM_181318, intron 1 of 13)	5261.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80064463-4	chr7	80064359	80064559	+	972.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045695, intron 2 of 2)	intron (NR_045695, intron 2 of 2)	10798.0	NR_045695	100859962.0	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	1.28060704233469	0.715148155323324	1.27799783662783	0.686192040033779	0.864870248168998	0.718735230018004	2.08891710168793	1.59947803750591	1.52318260483433	0.294824362550809	0.798191705447
Merged-chr1-136683370-4	chr1	136683288	136683488	+	969.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045324)	promoter-TSS (NR_045324)	-8.0	NR_045324	100503460.0	Mm.30630	NR_045324	ENSMUSG00000097113	Gm19705	-	predicted gene, 19705	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-90938622-4	chr8	90938520	90938720	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177224, intron 3 of 39)	intron (NM_177224, intron 3 of 39)	6371.0	NM_001310530	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	5.818704858178	5.60871282820051	5.63927457339804	5.91981858907812	5.59811525677831	5.27193121129926	4.60721908504724	5.78475213958016	-0.412133386064164	0.161555832160998	0.622415965615578
Merged-chr6-50037700-2	chr6	50037600	50037800	+	694.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72541.0	NM_019939	56524.0	Mm.41288	NM_008016	ENSMUSG00000038388	Mpp6	P55t|Pals2	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36277457-4	chr1	36277361	36277561	+	956.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4036.0	NM_153408	214854.0	Mm.389110	NM_153408	ENSMUSG00000047180	Neurl3	2010300P06Rik|Lincr	neuralized E3 ubiquitin protein ligase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-102565887-3	chr4	102565848	102566048	+	902.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019840, intron 5 of 14)	intron (NM_019840, intron 5 of 14)	-4112.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-94523826-2	chr16	94523726	94523926	+	736.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_007834, intron 1 of 7)	intron (NM_007834, intron 1 of 7)	2803.0	NM_007834	13185.0	Mm.7472	NM_007834	ENSMUSG00000022898	Dscr3	AW538125|Dcra	DSCR3 arrestin fold containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-3153883-4	chr11	3153779	3153979	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030207, intron 13 of 32)	intron (NM_030207, intron 13 of 32)	29858.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-30059493-4	chr16	30059403	30059603	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5854.0	NM_008235	15205.0	Mm.390859	NM_008235	ENSMUSG00000022528	Hes1	Hry|bHLHb39	hes family bHLH transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-144014222-2	chr2	144014122	144014322	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2959.0	NM_024281	81910.0	Mm.13705	NM_024281	ENSMUSG00000027422	Rrbp1	1700087N07Rik|5730465C04Rik|ES/130|mKIAA1398|mRRp0|mRRp1.8|mRRp10|mRRp15a|mRRp15b|mRRp16.8|mRRp2|mRRp41|mRRp47|mRRp5.4|p180	ribosome binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80427899-4	chr7	80427790	80427990	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20C2_MM|LTR|ERVK	-22454.0	NM_001081454	18550.0	Mm.5241	NM_011046	ENSMUSG00000030530	Furin	9130404I01Rik|Fur|PACE|Pcsk3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-8885393-3	chr10	8885288	8885488	+	965.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 1 of 19)	intron (NM_175155, intron 1 of 19)	682.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-77167516-1	chr5	77167416	77167616	+	915.0	f0_balb.idr	Intergenic	Intergenic	43689.0	NM_001289767	69982.0	Mm.46106	NM_183284	ENSMUSG00000053030	Spink2	1700007F22Rik|AV038945|HUSI-II	serine peptidase inhibitor, Kazal type 2	protein-coding	1.03305531495104	0.903060450477325	0.397114950723549	0.932664723072277	0.87366567247903	0.406220183087736	0.398755555217667	0.392373904059731	-1.81240428212677	0.325744581191652	1
Merged-chr12-108169093-2	chr12	108168993	108169193	+	780.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028262, intron 1 of 12)	intron (NM_028262, intron 1 of 12)	10191.0	NM_028262	52690.0	Mm.159185	NM_028262	ENSMUSG00000056770	Setd3	2610102I01Rik|2610305M23Rik|6030490B17Rik|D12Ertd771e	SET domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-45619120-4	chr17	45619011	45619211	+	938.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17009.0	NM_001177469	653016.0	Mm.45676	NM_001177468	ENSMUSG00000079471	Mymx	EG653016|Esgp|Gm7325|minion|myomerger	myomixer, myoblast fusion factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-73996519-2	chr7	73996419	73996619	+	580.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009181, intron 1 of 5)	MTD|LTR|ERVL-MaLR	17163.0	NM_009181	20450.0	Mm.4954	NM_009181	ENSMUSG00000025789	St8sia2	AI323367|ST8SiaII|STX|Siat8b	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-117121636-2	chr4	117121537	117121737	+	927.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_024078, intron 4 of 6)	intron (NR_024078, intron 4 of 6)	4088.0	NR_024078	78611.0	Mm.446227	NM_001033187		Btbd19	9530048O09Rik|BB115071	BTB (POZ) domain containing 19	ncRNA	1.23355311287454	1.7456452940279	2.61912078594873	2.97081289180454	2.40847215610632	4.42304457423102	2.64235256985847	3.15833504540369	1.86283335965671	0.0286825415619903	0.229933051443714
Merged-chr15-36683062-4	chr15	36682948	36683148	+	891.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74075.0	NM_008774	18458.0	Mm.371570	NM_008774	ENSMUSG00000022283	Pabpc1	PABP|Pabp1|PabpI|Pabpl1|ePAB	poly(A) binding protein, cytoplasmic 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-5870054-4	chr13	5869951	5870151	+	975.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011803, exon 4 of 4)	3' UTR (NM_011803, exon 4 of 4)	8562.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-130270465-2	chr2	130270365	130270565	+	574.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3947.0	NM_024193	67134.0	Mm.29363	NM_024193	ENSMUSG00000027405	Nop56	2310044F10Rik|Nol5a	NOP56 ribonucleoprotein	protein-coding	-1.7024385483431	-1.81249224917775	-1.82134771053534	-1.82862185015837	-1.70038292649591	-1.81057323376012	-1.81934302819017	-1.82731978264371	0.0376840119903864	0.991491645451152	1
Merged-chr1-131295299-2	chr1	131295199	131295399	+	642.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081011, intron 21 of 22)	intron (NM_001081011, intron 21 of 22)	-15736.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128794768-2	chr2	128794668	128794868	+	580.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 18 of 18)	intron (NM_008587, intron 18 of 18)	-23535.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-71896595-4	chr9	71896494	71896694	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253864)	promoter-TSS (NM_001253864)	-498.0	NM_001253863	21406.0	Mm.171615	NM_011544	ENSMUSG00000032228	Tcf12	A130037E08Rik|ALF1|HEB|HEBAlt|HTF-4|HTF4|ME1|REB|bHLHb20	transcription factor 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-136914547-2	chr2	136914447	136914647	+	871.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355671, intron 2 of 6)	intron (NM_001355671, intron 2 of 6)	15196.0	NM_001038641	74243.0	Mm.330612	NM_028201	ENSMUSG00000027281	Slx4ip	2210009G21Rik|2410004I22Rik|C85661|Slxip	SLX4 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-97868247-4	chr3	97868130	97868330	+	857.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039376, intron 1 of 46)	CpG	20477.0	NM_001289702	83679.0	Mm.129840	NM_031401	ENSMUSG00000038170	Pde4dip	4732458A06Rik|9430063L05Rik|C87016|D130016K21Rik|D3Bwg1078e|Usmg4|mKIAA0454	phosphodiesterase 4D interacting protein (myomegalin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-146185663-2	chr3	146185563	146185763	+	699.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001005846, intron 11 of 13)	ORR1F|LTR|ERVL-MaLR	-35298.0	NM_022983	65086.0	Mm.155520	NM_022983	ENSMUSG00000036832	Lpar3	Edg7|lpA3	lysophosphatidic acid receptor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59865338-3	chr15	59865244	59865444	+	889.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70385.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33345201-4	chr16	33345104	33345304	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	35532.0	NR_045709	100502742.0	Mm.217880	NR_045709	ENSMUSG00000097318	1700007L15Rik	linc-Iqcg|linc1609	RIKEN cDNA 1700007L15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43514970-2	chr4	43514870	43515070	+	986.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009416, exon 9 of 9)	3' UTR (NM_009416, exon 9 of 9)	-6223.0	NM_001013377	230098.0	Mm.331567	NM_001013377	ENSMUSG00000051517	Arhgef39	E130306D19Rik	Rho guanine nucleotide exchange factor (GEF) 39	protein-coding	-1.06143507733505	-1.04162019955508	-1.05291486968025	-1.05819092327156	-0.791893878288663	-1.03917259742211	-0.595621597270265	-1.05784875621095	2.7531441000867	0.384928181925071	1
Merged-chr17-10982332-4	chr17	10982242	10982442	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001317726, intron 1 of 6)	intron (NM_001317726, intron 1 of 6)	141983.0	NM_016694	50873.0	Mm.311110	NM_016694	ENSMUSG00000023826	Park2	PRKN	Parkinson disease (autosomal recessive, juvenile) 2, parkin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-77909639-2	chr10	77909539	77909739	+	741.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_138301, exon 34 of 34)	3' UTR (NM_138301, exon 34 of 34)	-7103.0	NM_145152	237387.0	Mm.133301	NM_145152	ENSMUSG00000051652	Lrrc3	1300011L04Rik|C21orf102	leucine rich repeat containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-31355135-3	chr16	31355048	31355248	+	756.483337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29858.0	NR_155301	102636590.0	Mm.45825	NR_155301		AV205837	-	expressed sequence AV205837	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-133053031-4	chr7	133052932	133053132	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009980, intron 2 of 10)	intron (NM_009980, intron 2 of 10)	28828.0	NM_001347623	13017.0	Mm.246240	NM_009980	ENSMUSG00000030970	Ctbp2	AA407280|D7Ertd45e|Gtrgeo6|Ribeye	C-terminal binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85372517-4	chr12	85372414	85372614	+	906.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026775, intron 1 of 4)	intron (NM_026775, intron 1 of 4)	2203.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-84957329-3	chr17	84957230	84957430	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159496)	promoter-TSS (NM_001159496)	93.0	NR_027929	68531.0	Mm.249695	NR_027929	ENSMUSG00000097047	1110020A21Rik	2600015P10Rik	RIKEN cDNA 1110020A21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117282266-4	chr10	117282145	117282345	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017372)	promoter-TSS (NM_017372)	27.0	NM_017372	17105.0	Mm.45436	NM_017372	ENSMUSG00000069516	Lyz2	AI326280|Lys|Lysm|Lyzf2|Lyzs|Lzm|Lzm-s1|Lzp	lysozyme 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-119536765-4	chr4	119536673	119536873	+	997.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004178, intron 1 of 3)	intron (NM_001004178, intron 1 of 3)	1996.0	NM_001004178	433752.0	Mm.425205	NM_001004178	ENSMUSG00000087385	Frg2f1	AA415398	FSHD region gene 2 family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-179960419-3	chr1	179960309	179960509	+	784.472229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346805)	promoter-TSS (NM_001346805)	-351.0	NM_001359541	226751.0	Mm.259655	NM_001033285	ENSMUSG00000026490	Cdc42bpa	A930014J19Rik|DMPK-like	CDC42 binding protein kinase alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-170535447-1	chr1	170535347	170535547	+	885.0	f0_balb.idr	intron (NM_001109985, intron 1 of 9)	intron (NM_001109985, intron 1 of 9)	21663.0	NM_027528	70729.0	Mm.409310	NM_027528	ENSMUSG00000038473	Nos1ap	6330408P19Rik|Capon	nitric oxide synthase 1 (neuronal) adaptor protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-130826946-2	chr4	130826846	130827046	+	735.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_011520)	TTS (NM_011520)	34409.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-141008638-4	chr2	141008531	141008731	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013802, intron 4 of 18)	intron (NM_001013802, intron 4 of 18)	-337155.0	NM_178382	71436.0	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-26439507-4	chr12	26439358	26439558	+	957.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16994.0	NM_021384	58185.0	Mm.24045	NM_021384	ENSMUSG00000020641	Rsad2	2510004L01Rik|Vig1|cig5	radical S-adenosyl methionine domain containing 2	protein-coding	3.10195793712612	4.04532588612057	2.33977883831687	3.0647962155842	4.63050889758082	4.64825028287529	4.82982027130476	4.46775531575413	1.89242031660639	0.000118130546912196	0.00349246198725997
Merged-chr10-127668244-4	chr10	127668134	127668334	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045171, intron 1 of 1)	intron (NR_045171, intron 1 of 1)	1111.0	NR_045171	72243.0	Mm.482902	NR_045171	ENSMUSG00000040195	1700012D01Rik	-	RIKEN cDNA 1700012D01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-31352753-3	chr15	31352655	31352855	+	935.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027496, intron 1 of 3)	MLT2C2|LTR|ERVL	15004.0	NM_001357923	67434.0	Mm.102470	NM_026153	ENSMUSG00000022237	Ankrd33b	0610012A05Rik|3021401C12Rik|5730557B15Rik	ankyrin repeat domain 33B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-99791178-1	chr12	99791078	99791278	+	540.0	f1_c57bl6.idr	intron (NM_030172, intron 5 of 5)	intron (NM_030172, intron 5 of 5)	92264.0	NM_030172	78767.0	Mm.235920	NM_030172	ENSMUSG00000021176	Efcab11	2610021K21Rik|2610110A13Rik	EF-hand calcium binding domain 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-130800994-2	chr3	130800894	130801094	+	633.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70596.0	NM_001005859	68436.0	Mm.140568	NM_026724	ENSMUSG00000062006	Rpl34	1100001I22Rik	ribosomal protein L34	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-181144299-4	chr1	181144203	181144403	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026171)	promoter-TSS (NM_026171)	-99.0	NM_026171	67459.0	Mm.263464	NM_026171	ENSMUSG00000026516	Nvl	1200009I24Rik	nuclear VCP-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-23127808-4	chr16	23127696	23127896	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145480)	promoter-TSS (NM_145480)	-66.0	NM_145480	106344.0	Mm.386835	NM_145480	ENSMUSG00000022881	Rfc4	A1|AI894123|AU040575|RFC37	replication factor C (activator 1) 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-121759304-4	chr9	121759128	121759328	+	613.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166644)	promoter-TSS (NM_001166644)	715.0	NR_033503	320301.0	Mm.373883	NR_033503		E530011L22Rik	-	RIKEN cDNA E530011L22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-103374758-4	chr11	103374648	103374848	+	917.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183034, intron 7 of 11)	intron (NM_183034, intron 7 of 11)	-11056.0	NM_001205236	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	0.93250814798977	1.78879967817849	1.21875452512897	1.66957005488988	2.39056895281548	2.05489719642846	0.984569957185983	1.54072402878686	1.21050503832967	0.321790849925313	0.823903365381149
Merged-chr16-91933382-4	chr16	91933290	91933490	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1760.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-3281914-4	chr18	3281821	3282021	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311067)	promoter-TSS (NM_001311067)	-174.0	NM_001110855	12916.0	Mm.5244	NM_013498	ENSMUSG00000063889	Crem	ICER|ICERI	cAMP responsive element modulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97311432-2	chr6	97311343	97311543	+	712.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 12 of 23)	intron (NM_145148, intron 12 of 23)	-58663.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-60837999-4	chr11	60837849	60838049	+	975.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001172112, intron 1 of 6)	intron (NM_001172112, intron 1 of 6)	7318.0	NM_145428	216820.0	Mm.21475	NM_145428	ENSMUSG00000042569	Dhrs7b	BC003479|C79874|C80074|PexRAP	dehydrogenase/reductase (SDR family) member 7B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-119293949-5	chr4	119293884	119294084	+	998.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011732, intron 1 of 7)	CpG-10232	529.0	NM_011732	22608.0	Mm.258204	NM_011732	ENSMUSG00000028639	Ybx1	1700102N10Rik|C79409|EF1A|MSY1|Nsep1|YB-1|dbpB|mYB-1a	Y box protein 1	protein-coding	3.22300623295043	3.16486928409352	2.95463744425895	3.52002140909574	2.93990307621311	3.07844982149363	2.73121755309928	3.40517488992347	-0.291908572526221	0.629722145895942	0.981201918729827
Merged-chr15-99484479-2	chr15	99484410	99484610	+	609.5	f0_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9780.0	NM_029236	75284.0	Mm.32826	NM_029236	ENSMUSG00000037525	Bcdin3d	4930556P03Rik|AV138748	BCDIN3 domain containing	protein-coding	0.103069856775171	0.123324794439805	0.910279029440779	0.111604862822145	0.786992749791778	0.331475242905395	0.118179821159383	0.288253892584338	0.196603213297037	0.922699429620854	1
Merged-chr12-80231620-4	chr12	80231549	80231749	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134156, intron 1 of 20)	intron (NM_134156, intron 1 of 20)	28722.0	NM_134156	109711.0	Mm.253564	NM_134156	ENSMUSG00000015143	Actn1	3110023F10Rik|Actn1a	actinin, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-45548906-3	chr17	45548814	45549014	+	694.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013749, intron 1 of 2)	intron (NM_001013749, intron 1 of 2)	763.0	NM_001013749	210573.0	Mm.329064	NM_001013749	ENSMUSG00000096847	Tmem151b	Gm323	transmembrane protein 151B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-91041072-2	chr1	91040972	91041172	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111312, intron 1 of 12)	RSINE1|SINE|B4	-12372.0	NM_001111311	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-121521639-2	chr1	121521539	121521739	+	754.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010483, intron 1 of 1)	intron (NM_010483, intron 1 of 1)	6826.0	NM_010483	15564.0	Mm.4833	NM_010483	ENSMUSG00000050534	Htr5b	5-Ht5b	5-hydroxytryptamine (serotonin) receptor 5B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-118748656-4	chr12	118748554	118748754	+	892.0125119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-97675.0	NM_177082	320145.0	Mm.51682	NM_177082	ENSMUSG00000048562	Sp8	D930049B17Rik|mBtd	trans-acting transcription factor 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-99352543-2	chr13	99352443	99352643	+	715.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_173757, intron 2 of 10)	MTA_Mm|LTR|ERVL-MaLR	7757.0	NM_173757	218506.0	Mm.30208	NM_173757	ENSMUSG00000041632	Mrps27	2610028H14Rik	mitochondrial ribosomal protein S27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-95347136-2	chr13	95347036	95347236	+	970.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16525.0	NR_034043	100217450.0	Mm.442313	NR_034043	ENSMUSG00000088108	Snora47	MBI-115	small nucleolar RNA, H/ACA box 47	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128743478-3	chr10	128743345	128743545	+	595.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358745, intron 3 of 25)	intron (NM_001358745, intron 3 of 25)	631.0	NM_016811	13139.0	Mm.291235	NM_016811	ENSMUSG00000025357	Dgka	80kDa|AW146112|Dagk1	diacylglycerol kinase, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43420010-4	chr4	43419917	43420117	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037709, intron 2 of 11)	intron (NM_001037709, intron 2 of 11)	9117.0	NM_177377	329831.0	Mm.454466	NM_177377	ENSMUSG00000042788	Fam166b	4833436C18Rik	family with sequence similarity 166, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-52957666-2	chr2	52957566	52957766	+	793.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	99798.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-5093813-4	chr6	5093713	5093913	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181595, intron 6 of 15)	MLT1F2|LTR|ERVL-MaLR	100133.0	NM_011134	18979.0	Mm.237657	NM_011134	ENSMUSG00000002588	Pon1	Pon	paraoxonase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-64879120-1	chr1	64879020	64879220	+	577.0	f0_balb.idr	intron (NM_001039493, intron 5 of 7)	intron (NM_001039493, intron 5 of 7)	77704.0	NM_001039493	241075.0	Mm.239534	NM_175509	ENSMUSG00000051344	Plekhm3	9430067K14Rik|A230102O09Rik|AI449570|DAPR|Plekhm1l	pleckstrin homology domain containing, family M, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-17284059-4	chr6	17283978	17284178	+	786.891663	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016900, intron 2 of 2)	intron (NM_016900, intron 2 of 2)	2893.0	NM_016900	12390.0	Mm.396075	NM_016900	ENSMUSG00000000058	Cav2	AI447843	caveolin 2	protein-coding	-1.84436392554074	-1.52091821270385	-1.82290882857571	-1.83054882630441	-1.84220491470818	-1.81159244170985	-1.82080331928423	-1.82918127036376	-1.56828060379516	0.655578384384393	1
Merged-chr13-83041721-4	chr13	83041642	83041842	+	942.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-343409.0	NR_039537	100628621.0		NR_039537	ENSMUSG00000106655	Mir3961	mmu-mir-3961	microRNA 3961	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-19094927-2	chr10	19094827	19095027	+	747.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46822.0	NR_038021	100504265.0	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-103885107-2	chr14	103885007	103885207	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40631.0	NM_001136061	13618.0	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4057378-2	chr19	4057278	4057478	+	568.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001362043)	TTS (NM_001362043)	2069.0	NM_144869	225884.0	Mm.440201	NM_144869	ENSMUSG00000058216	Gstp3	-	glutathione S-transferase pi 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-36625945-2	chr16	36625845	36626045	+	810.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019388, intron 2 of 7)	intron (NM_019388, intron 2 of 7)	40132.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-38385141-5	chr18	38385042	38385242	+	860.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33765.0	NM_022996	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-20204380-2	chr13	20204280	20204480	+	907.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 2 of 21)	intron (NM_080288, intron 2 of 21)	113873.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129513969-2	chr2	129513873	129514073	+	665.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177653, intron 1 of 6)	intron (NM_177653, intron 1 of 6)	22629.0	NM_177653	228592.0	Mm.452175	NM_177653	ENSMUSG00000043727	F830045P16Rik	Sirpb3	RIKEN cDNA F830045P16 gene	protein-coding	1.81950631904262	2.04569976936352	1.20988383907365	2.34987422336229	2.05931582693361	1.50918041941158	1.84214750851602	2.79742296254952	0.572770702087015	0.575747914427827	0.965286201225318
Merged-chr7-141392152-4	chr7	141392059	141392259	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011528)	promoter-TSS (NM_011528)	-1.0	NM_011528	21351.0	Mm.29182	NM_011528	ENSMUSG00000025503	Taldo1	-	transaldolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-182369647-4	chr1	182369573	182369773	+	971.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28067.0	NM_175127	67948.0	Mm.30737	NM_175127	ENSMUSG00000047539	Fbxo28	4833428J17Rik|5730505P19Rik|D1Ertd578e|Fbx28|mKIAA0483	F-box protein 28	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-3514801-4	chr11	3514720	3514920	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_053267, exon 1 of 5)	5' UTR (NM_053267, exon 1 of 5)	136.0	NM_053267	114679.0	Mm.34046	NM_053267	ENSMUSG00000075702	Selenom	1500040L08Rik|A230103K18|Selm|Sepm	selenoprotein M	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-57820269-3	chr11	57820147	57820347	+	673.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11900.0	NM_008213	15110.0	Mm.4746	NM_008213	ENSMUSG00000037335	Hand1	Ehand1|Hxt|Th1|Thing1|bHLHa27|eHAND	heart and neural crest derivatives expressed 1	protein-coding	0.424089110134541	0.455655311780101	1.4762656936884	0.628200067852052	0.868156681996257	0.457934522824591	1.21418905791183	0.631934490067305	-0.0712508045785451	0.966027905272082	0.998431161219273
Merged-chr18-89597281-3	chr18	89597173	89597373	+	718.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039173, intron 2 of 7)	Lx2|LINE|L1	171863.0	NM_001039173	623279.0	Mm.447164	NM_001039173	ENSMUSG00000073514	Dok6	Dok-6	docking protein 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-33051825-2	chr12	33051725	33051925	+	599.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001024478, intron 10 of 19)	intron (NM_001024478, intron 10 of 19)	41050.0	NM_001024478	68764.0	Mm.60083	NM_001024478	ENSMUSG00000035860	Cdhr3	1110049B09Rik|BB172694|Cdh28	cadherin-related family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-63111041-3	chr1	63110935	63111135	+	763.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114609, intron 1 of 11)	B3|SINE|B2	3232.0	NM_001081436	227195.0	Mm.74718	NM_001081436	ENSMUSG00000040865	Ino80d	7330405I11|A430093A21Rik|BC010584	INO80 complex subunit D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-113450109-4	chr2	113450004	113450204	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285459, intron 2 of 16)	intron (NM_001285459, intron 2 of 16)	9040.0	NM_001285459	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-115423910-4	chr8	115423820	115424020	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	282974.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-100499711-3	chr12	100499598	100499798	+	677.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033213, intron 2 of 19)	intron (NM_001033213, intron 2 of 19)	21124.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6906065-2	chr19	6905965	6906165	+	548.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001358444)	TTS (NM_001358444)	-3633.0	NM_001166370	67674.0	Mm.318804	NM_026306	ENSMUSG00000038812	Trmt112	0610038D11Rik|Trm112p	tRNA methyltransferase 11-2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191216662-2	chr1	191216562	191216762	+	546.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7792.0	NR_151547	100504360.0	Mm.16927	NM_001033188		D730003I15Rik	AU020850	RIKEN cDNA D730003I15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-58534984-4	chr9	58534890	58535090	+	865.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133983, intron 3 of 6)	intron (NM_133983, intron 3 of 6)	5950.0	NM_133983	102657.0	Mm.5356	NM_133983	ENSMUSG00000035914	Cd276	6030411F23Rik|AU016588|B7RP-2|B7h3	CD276 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-181277010-2	chr2	181276902	181277102	+	670.0	f0_balb.idr|f0_c57.idr	intron (NM_198169, intron 2 of 9)	intron (NM_198169, intron 2 of 9)	10964.0	NM_198169	229004.0	Mm.220423	NM_198169	ENSMUSG00000038705	Gmeb2	AI839884	glucocorticoid modulatory element binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72140593-4	chr6	72140495	72140695	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001035228, intron 3 of 6)	intron (NM_001035228, intron 3 of 6)	-17398.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-57417018-1	chr14	57416918	57417118	+	821.0	f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-7053.0	NM_009376	21821.0	Mm.4653	NM_009376	ENSMUSG00000040040	Ift88	AW552028|Tg737|Tg737Rpw|TgN737Rpw|Ttc10|flexo|fxo|orpk|polaris	intraflagellar transport 88	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-38106884-3	chr7	38106754	38106954	+	883.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007633, intron 1 of 11)	intron (NM_007633, intron 1 of 11)	636.0	NM_007633	12447.0	Mm.16110	NM_007633	ENSMUSG00000002068	Ccne1	AW538188|CycE1	cyclin E1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-108865858-2	chr3	108865758	108865958	+	856.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001165965, intron 8 of 11)	intron (NM_001165965, intron 8 of 11)	24150.0	NM_177091	320181.0	Mm.244233	NM_177091	ENSMUSG00000045326	Fndc7	E230011A21Rik	fibronectin type III domain containing 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133607252-1	chr4	133607152	133607352	+	720.0	f1_c57bl6.idr	3' UTR (NM_001017968, exon 8 of 8)	3' UTR (NM_001017968, exon 8 of 8)	-5084.0	NM_018754	55948.0	Mm.44482	NM_018754	ENSMUSG00000047281	Sfn	Er|Mme1|Ywhas	stratifin	protein-coding	0.760715805724543	0.0522059022561508	0.0463454082828594	0.0418161791460828	0.698649641043032	0.0535254836259985	0.0476389202298871	0.356324972661552	0.288888281052711	0.895995053267057	1
Merged-chr16-11063274-4	chr16	11063174	11063374	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3024.0	NM_009223	20621.0	Mm.325800	NM_009223	ENSMUSG00000037972	Snn	2810407J07Rik|AI848521|AW547286	stannin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45141718-2	chr7	45141618	45141818	+	658.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_145954)	TTS (NM_145954)	-5286.0	NR_102725	14256.0	Mm.1658	NM_013520	ENSMUSG00000110206	Flt3l	Flt3lg|Ly72L	FMS-like tyrosine kinase 3 ligand	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91019718-2	chr16	91019618	91019818	+	548.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_152264, intron 15 of 17)	intron (NR_152264, intron 15 of 17)	-8410.0	NM_001164483	104015.0	Mm.187079	NM_001045515	ENSMUSG00000022973	Synj1	A930006D20Rik|AA675315|mKIAA0910	synaptojanin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-127378327-4	chr2	127378235	127378435	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15049.0	NM_009633	11552.0	Mm.347390	NM_009633	ENSMUSG00000058620	Adra2b	Adra-2b|[a]2B|a2b-AR|alpha2-C2|alpha2B	adrenergic receptor, alpha 2b	protein-coding	4.65515233927479	4.21174530724549	3.59374380670734	5.05452912572502	4.22668038691789	3.42142415968245	4.3490745980996	4.64204544212521	-0.330242527854564	0.477341696366942	0.927980290875356
Merged-chr14-121455729-3	chr14	121455624	121455824	+	853.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49530.0	NM_053079	56643.0	Mm.155618	NM_053079	ENSMUSG00000025557	Slc15a1	D630032F02|PECT1|PEPT1	solute carrier family 15 (oligopeptide transporter), member 1	protein-coding	2.62386749806965	2.21177669783777	1.96905594904385	2.47382409739181	2.72276771947266	2.86055124664494	2.44294862219435	2.68606235891384	0.723854571156751	0.343790664845126	0.844681557087873
Merged-chr5-65723645-2	chr5	65723545	65723745	+	836.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MERV1_I-int|LTR|ERV1	-25789.0	NM_001081321	71521.0	Mm.278974	NM_027818	ENSMUSG00000029202	Pds5a	9030416H16Rik|E230024D05Rik|mKIAA0648	PDS5 cohesin associated factor A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135494186-2	chr4	135494086	135494286	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361484, intron 1 of 11)	intron (NM_001361484, intron 1 of 11)	392.0	NM_001347220	74552.0	Mm.26548	NM_028995	ENSMUSG00000028803	Nipal3	9130020G22Rik|AI480660|Npal3	NIPA-like domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-136986913-4	chr5	136986814	136987014	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011962)	promoter-TSS (NM_011962)	-10.0	NM_001310748	70103.0	Mm.273147	NM_027318	ENSMUSG00000059518	Znhit1	2700001K05Rik|ZNFN4A1	zinc finger, HIT domain containing 1	protein-coding	5.56557901129042	5.05351682700547	6.43597440773179	5.27976361121522	5.83384213588996	6.30688633996334	5.851414448211	5.97451297696256	0.34397303589797	0.258726378362797	0.759126168461617
Merged-chr7-102000312-2	chr7	102000212	102000412	+	575.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_133947, exon 14 of 25)	exon (NM_133947, exon 14 of 25)	17843.0	NM_010531	16068.0	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118756584-1	chr9	118756484	118756684	+	668.0	f1_c57bl6.idr	intron (NM_001113514, intron 1 of 13)	intron (NM_001113514, intron 1 of 13)	44892.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	-0.0676937023973111	-0.0473671653690042	-0.0539707641707122	0.630616135484856	0.0979206867112558	0.854371536319341	-0.0525097916620078	-0.0582032292124327	0.750438216616756	0.735615375181421	1
Merged-chr17-10840295-4	chr17	10840224	10840424	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016694)	promoter-TSS (NM_016694)	-35.0	NM_001317726	50873.0	Mm.311110	NM_016694	ENSMUSG00000023826	Park2	PRKN	Parkinson disease (autosomal recessive, juvenile) 2, parkin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-130139582-4	chr5	130139468	130139668	+	887.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5320.0	NM_172509	212919.0	Mm.55812	NM_172509	ENSMUSG00000034110	Kctd7	4932409E18|9430010P06Rik	potassium channel tetramerisation domain containing 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-61242337-4	chr9	61242236	61242436	+	999.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51473.0	NR_045334	622037.0	Mm.126243	NR_045334	ENSMUSG00000111658	B930092H01Rik	-	RIKEN cDNA B930092H01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-25313190-2	chr6	25313090	25313290	+	584.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-357065.0	NM_177013	319832.0	Mm.127446	NM_177013	ENSMUSG00000048022	Tmem229a	6332401O19Rik	transmembrane protein 229A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-63998208-4	chr15	63998118	63998318	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360035)	promoter-TSS (NM_001360035)	-152.0	NM_001360035	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-62448271-4	chr17	62448193	62448393	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	433024.0	NM_207654	13640.0	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-3424671-4	chr2	3424552	3424752	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302684, intron 1 of 14)	intron (NM_001302684, intron 1 of 14)	521.0	NM_001302684	227525.0	Mm.23483	NM_146114	ENSMUSG00000026648	Dclre1c	9930121L06Rik|AI661365|Art|Snm1l	DNA cross-link repair 1C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-100160458-4	chr10	100160369	100160569	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	144648.0	NM_013598	17311.0	Mm.45124	NM_013598	ENSMUSG00000019966	Kitl	Clo|Con|Gb|Kitlg|Mgf|SCF|SF|SLF|Sl|blz|contrasted	kit ligand	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-34372190-2	chr5	34372090	34372290	+	850.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001243123, intron 1 of 20)	intron (NM_001243123, intron 1 of 20)	2257.0	NM_001243123	231128.0	Mm.286885	NM_001030306	ENSMUSG00000037210	Fam193a	-	family with sequence similarity 193, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-10654760-2	chr11	10654660	10654860	+	695.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2B2|LINE|L1	-459256.0	NM_177033	319922.0	Mm.337851	NM_177033	ENSMUSG00000050830	Vwc2	A930041G11Rik|G11|PSST739|UNQ739|cradin	von Willebrand factor C domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55602561-2	chr14	55602461	55602661	+	732.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_194346, intron 18 of 20)	intron (NM_194346, intron 18 of 20)	-1424.0	NM_008394	16391.0	Mm.2032	NM_008394	ENSMUSG00000002325	Irf9	Irf-9|Isgf3g|p48	interferon regulatory factor 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-54972186-2	chr11	54972086	54972286	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9246.0	NM_001271455	57783.0	Mm.259671	NM_021327	ENSMUSG00000020400	Tnip1	ABIN|ABIN-1|ABIN1|AU018810|Naf1|Nef|VAN	TNFAIP3 interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153111568-4	chr2	153111489	153111689	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001172117, intron 1 of 12)	Tigger7|DNA|TcMar-Tigger	3121.0	NM_010407	15162.0	Mm.715	NM_010407	ENSMUSG00000003283	Hck	AI849071|Bmk	hemopoietic cell kinase	protein-coding	1.78822410698463	2.4702374514808	1.42762135053428	2.12061803551167	1.34388179803669	2.48936668791107	1.43710800734215	2.13199914360343	-0.164670356530158	0.872521530753308	0.998431161219273
Merged-chr3-133310112-4	chr3	133310038	133310238	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146141)	promoter-TSS (NM_146141)	28.0	NM_001293641	74776.0	Mm.210305	NM_146141	ENSMUSG00000028013	Ppa2	1110013G13Rik|Sid6306	pyrophosphatase (inorganic) 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-13037536-4	chr7	13037445	13037645	+	971.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001243968)	promoter-TSS (NM_001243968)	82.0	NM_001243968	22192.0	Mm.196580	NM_145578	ENSMUSG00000005575	Ube2m	2510040H03Rik|UBC12|Ubc-rs2	ubiquitin-conjugating enzyme E2M	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-92341103-2	chr16	92341003	92341203	+	851.400024	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18365.0	NM_008424	16509.0	Mm.299425	NM_008424	ENSMUSG00000039639	Kcne1	Isk|MinK|nmf190	potassium voltage-gated channel, Isk-related subfamily, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-134561117-3	chr1	134561036	134561236	+	788.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152895, intron 1 of 26)	CpG	958.0	NM_152895	75605.0	Mm.28995	NM_152895	ENSMUSG00000042207	Kdm5b	2010009J12Rik|2210016I17Rik|AW556288|D1Ertd202e|Jarid1b|PLU-1|PUT1|Plu1|RBBP2H1A|Rb-Bp2|mKIAA4034	lysine (K)-specific demethylase 5B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-88678207-1	chr10	88678107	88678307	+	593.5	f0_balb.idr	intron (NM_011461, intron 4 of 5)	B1_Mur4|SINE|Alu	4816.0	NM_011461	20728.0	Mm.21642	NM_011461	ENSMUSG00000004359	Spic	AU019198|C76795|Prf|Spi-C	Spi-C transcription factor (Spi-1/PU.1 related)	protein-coding	1.37758399808624	0.955707854484363	1.95456186270777	1.69663476618183	2.02783600573366	1.56432151176136	0.941986231270717	1.13735895756355	-0.164742731829228	0.896868500666873	0.998431161219273
Merged-chr1-95762411-4	chr1	95762302	95762502	+	927.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45884.0	NR_040479	75381.0	Mm.417807	NR_040479	ENSMUSG00000100777	4930598F16Rik	-	RIKEN cDNA 4930598F16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126794256-3	chr7	126794146	126794346	+	768.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001177308)	TTS (NM_001177308)	-1699.0	NM_019674	56420.0	Mm.41998	NM_019674	ENSMUSG00000030697	Ppp4c	1110002D08Rik|AU016079|PP-X|PP4C|Ppx|pp4	protein phosphatase 4, catalytic subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46929850-2	chr8	46929750	46929950	+	599.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	-57037.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127118670-2	chr10	127118570	127118770	+	692.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177614, intron 5 of 13)	URR1A|DNA|hAT-Charlie	2490.0	NM_177614	216440.0	Mm.295246	NM_177614	ENSMUSG00000040462	Os9	4632413K17Rik|AU022351	amplified in osteosarcoma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-29402602-2	chr19	29402502	29402702	+	753.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8317.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-25226636-4	chr8	25226532	25226732	+	837.983337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25090.0	NM_177089	320165.0	Mm.308452	NM_177089	ENSMUSG00000065954	Tacc1	4833447E04Rik|AA960202|B230378H13Rik	transforming, acidic coiled-coil containing protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-95674604-4	chr16	95674497	95674697	+	980.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27810.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-23193227-4	chr17	23193126	23193326	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009555)	promoter-TSS (NM_009555)	2.0	NM_009555	22700.0	Mm.437934	NM_009555	ENSMUSG00000002617	Zfp40	CTfin12|NTfin12|Zfp-40	zinc finger protein 40	protein-coding	3.32660232343888	2.5578965797062	4.03757681527901	2.9576666425574	3.42391561127759	3.05496323965994	3.83688393773223	4.00197916577038	0.441330685776022	0.460681434019101	0.920953234475195
Merged-chr4-133701212-4	chr4	133701118	133701318	+	860.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080819, intron 4 of 19)	intron (NM_001080819, intron 4 of 19)	15890.0	NR_106086	102465707.0		NR_106086	ENSMUSG00000104566	Mir7227	mmu-mir-7227	microRNA 7227	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-27710094-2	chr3	27709994	27710194	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356953, intron 1 of 26)	CpG	358.0	NM_001356953	72007.0	Mm.38832	NM_173182	ENSMUSG00000039286	Fndc3b	1600019O04Rik|AW550168|Fad104|mKIAA4164	fibronectin type III domain containing 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-104655160-3	chr8	104655054	104655254	+	942.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13426.0	NM_026753	68523.0	Mm.279	NM_026753	ENSMUSG00000031879	Fam96b	1110019N10Rik	family with sequence similarity 96, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-107525803-4	chr1	107525696	107525896	+	800.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001174170)	TTS (NM_001174170)	-3207.0	NM_001160307	241197.0	Mm.123919	NM_198028	ENSMUSG00000092572	Serpinb10	9830131G07|BB233602|Serpinb10-ps	serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117718957-3	chr11	117718852	117719052	+	830.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198022, intron 4 of 21)	intron (NM_198022, intron 4 of 21)	60696.0	NR_154387	217353.0	Mm.286963	NM_145439	ENSMUSG00000025572	Tmc6	D11Ertd204e|EVER1	transmembrane channel-like gene family 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-158124276-2	chr2	158124176	158124376	+	856.833374	f1_balb.idr|f1_c57bl6.idr	exon (NM_009373, exon 10 of 13)	exon (NM_009373, exon 10 of 13)	22116.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-92919341-2	chr1	92919241	92919441	+	620.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_181405, intron 10 of 10)	intron (NM_181405, intron 10 of 10)	8516.0	NM_181405	108657.0	Mm.200971	NM_181405	ENSMUSG00000026269	Rnpepl1	1110014H17Rik|AI894167	arginyl aminopeptidase (aminopeptidase B)-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-79765760-2	chr10	79765660	79765860	+	712.900024	f1_balb.idr|f1_c57bl6.idr	intron (NR_027505, intron 1 of 7)	B1_Mus1|SINE|Alu	1192.0	NM_144528	70294.0	Mm.466670	NM_144528	ENSMUSG00000035890	Rnf126	2610010O19Rik	ring finger protein 126	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-145276426-4	chr6	145276308	145276508	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25856.0	NR_045598	100039495.0	Mm.121014	NR_045598	ENSMUSG00000086013	Gm15706	-	predicted gene 15706	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-59133801-3	chr12	59133705	59133905	+	990.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001165253, intron 1 of 22)	intron (NM_001165253, intron 1 of 22)	2352.0	NM_001165253	338320.0	Mm.213215	NM_146034	ENSMUSG00000021000	Mia2	Ctage5|D12Bwg0579e|Mea6|Mgea|Mgea6	melanoma inhibitory activity 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-79018435-1	chr11	79018335	79018535	+	569.0	f1_c57bl6.idr	intron (NM_001348207, intron 16 of 17)	intron (NM_001348207, intron 16 of 17)	-5162.0	NR_045873	790910.0	Mm.440410	NR_045873		Gm11201	-	predicted gene 11201	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-69060270-2	chr2	69060170	69060370	+	696.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347161, intron 6 of 10)	intron (NM_001347161, intron 6 of 10)	-75530.0	NM_181547	329416.0	Mm.90047	NM_181547	ENSMUSG00000034738	Nostrin	Daip2|mDaIP2	nitric oxide synthase trafficker	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-36001505-2	chr11	36001384	36001584	+	992.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21395.0	NM_170779	211652.0	Mm.31267	NM_170779	ENSMUSG00000018849	Wwc1	AA408228|AU017197|BC037006|Kibra|mKIAA0869	WW, C2 and coiled-coil domain containing 1	protein-coding	-0.802312452060739	-0.793855444777852	-0.62817657933431	-0.394060394771942	-0.801788549493964	-0.79195138372236	-0.796027838550336	-0.505723542545853	-0.932120018222366	0.74406494668802	1
Merged-chr13-67270143-2	chr13	67270042	67270242	+	567.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1074.0	NM_001001152	238690.0	Mm.306358	NM_001001152	ENSMUSG00000055480	Zfp458	BC062958|Gm33446|Rslcan-7|Znf728|mszf59-2	zinc finger protein 458	protein-coding	0.390924063141885	0.786068978346945	0.860512041572411	0.243789734804371	0.235171109162583	0.259383244788525	1.07863077875316	0.244849853096449	-0.398641914173312	0.835477404200079	1
Merged-chr7-125636191-1	chr7	125636091	125636291	+	608.0	f1_balb.idr	Intergenic	Intergenic	32762.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	0.994631026946923	0.600402747760046	0.589478294384175	1.54759617370302	1.00464578860222	0.82382474259327	0.591900080399054	1.38999361904929	-0.0777730403338492	0.960734432182208	0.998431161219273
Merged-chr1-130918787-3	chr1	130918667	130918867	+	669.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7471.0	NM_021380	58181.0	Mm.103794	NM_021380	ENSMUSG00000026416	Il20	Zcyto10	interleukin 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105534121-3	chr8	105534022	105534222	+	799.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013477, intron 2 of 7)	intron (NM_013477, intron 2 of 7)	15376.0	NM_008289	15484.0	Mm.5079	NM_008289	ENSMUSG00000031891	Hsd11b2	11HSD2	hydroxysteroid 11-beta dehydrogenase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-31127252-2	chr6	31127152	31127352	+	651.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_110471, intron 3 of 3)	intron (NR_110471, intron 3 of 3)	-64159.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-9878675-4	chr13	9878588	9878788	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_033269, exon 5 of 5)	exon (NM_033269, exon 5 of 5)	-113367.0	NM_144516	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-151706254-4	chr1	151706134	151706334	+	869.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022018, intron 11 of 13)	intron (NM_022018, intron 11 of 13)	48493.0	NR_151474	102640772.0		NR_151473	ENSMUSG00000100594	2810414N06Rik	-	RIKEN cDNA 2810414N06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-119283614-3	chr13	119283514	119283714	+	916.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	125397.0	NM_008710	18115.0	Mm.132584	NM_008710	ENSMUSG00000116207	Nnt	4930423F13Rik|AI323702|BB168308	nicotinamide nucleotide transhydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-108766643-4	chr12	108766550	108766750	+	986.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26661.0	NM_009537	22632.0	Mm.3868	NM_009537	ENSMUSG00000021264	Yy1	AW488674|NF-E1	YY1 transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-35524252-2	chr9	35524152	35524352	+	844.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR50|LTR|ERVL	34218.0	NM_013932	30959.0	Mm.291723	NM_013932	ENSMUSG00000032101	Ddx25	AW047046|GRTH	DEAD (Asp-Glu-Ala-Asp) box polypeptide 25	protein-coding	-1.7024385483431	-1.81249224917775	-1.82134771053534	-1.82862185015837	-1.70038292649591	-1.81057323376012	-1.81934302819017	-1.82731978264371	0.0376840119903864	0.991491645451152	1
Merged-chr15-73137549-4	chr15	73137473	73137673	+	967.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153178, intron 3 of 18)	intron (NM_153178, intron 3 of 18)	47161.0	NM_053068	93696.0	Mm.23095	NM_053068	ENSMUSG00000068391	Chrac1	2410152E03Rik|2810406L04Rik|YCL1	chromatin accessibility complex 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-35906628-3	chr2	35906528	35906728	+	594.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029774, intron 3 of 9)	intron (NM_029774, intron 3 of 9)	72996.0	NM_029774	74410.0	Mm.21591	NM_028921	ENSMUSG00000026885	Ttll11	4932702F08Rik|4933424A20Rik|AU043211|D2Ertd624e	tubulin tyrosine ligase-like family, member 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-6734868-2	chr17	6734768	6734968	+	839.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183368, intron 6 of 8)	intron (NM_183368, intron 6 of 8)	29038.0	NM_183368	83672.0	Mm.442201	NM_031395	ENSMUSG00000041831	Sytl3	A430092N21|Slp3|Slp3-a|Slp3-b|mFLJ00307	synaptotagmin-like 3	protein-coding	-0.13251276102441	-0.262060888445045	-0.266586765217332	-0.270077360617454	0.295119110847546	0.362303362647477	-0.265588712884216	-0.269467635187542	2.90598694580742	0.229643157574757	1
Merged-chr7-120834542-3	chr7	120834448	120834648	+	741.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8283.0	NM_007908	13631.0	Mm.25997	NM_007908	ENSMUSG00000035064	Eef2k	C86191|eEF-2K	eukaryotic elongation factor-2 kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-107142977-4	chr3	107142895	107143095	+	976.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40148.0	NM_001081140	242151.0	Mm.245155	NM_001081140	ENSMUSG00000042861	Kcna10	Gm1962|Kcna8|Kv1.8	potassium voltage-gated channel, shaker-related subfamily, member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135168414-4	chr5	135168333	135168533	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009745)	promoter-TSS (NM_009745)	61.0	NM_009745	12054.0	Mm.405834	NM_009745	ENSMUSG00000029681	Bcl7b	-	B cell CLL/lymphoma 7B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-44761022-2	chr13	44760922	44761122	+	831.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205043, intron 1 of 17)	intron (NM_001205043, intron 1 of 17)	29751.0	NM_001205043	16468.0	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128094072-2	chr10	128093972	128094172	+	904.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_054078, intron 1 of 29)	intron (NM_054078, intron 1 of 29)	1289.0	NM_054078	116848.0	Mm.252213	NM_054078	ENSMUSG00000040054	Baz2a	AA415431|C030005G16Rik|C78388|Tip5|Walp3|mKIAA0314	bromodomain adjacent to zinc finger domain, 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-54117542-2	chr10	54117442	54117642	+	867.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41620.0	NR_038016	100502920.0	Mm.403982	NR_038016	ENSMUSG00000097069	Gm16998	-	predicted gene, 16998	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-121007439-3	chr4	121007353	121007553	+	637.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133716, intron 1 of 9)	intron (NM_133716, intron 1 of 9)	9794.0	NM_133716	69780.0	Mm.271819	NM_133716	ENSMUSG00000032870	Smap2	1810031K02Rik|AA408614|Smap1l	small ArfGAP 2	protein-coding	2.21181788029479	2.99352081040936	3.61161998944936	2.59687647059227	3.08328908638822	2.65546489278313	2.06951635686188	2.82583145221488	-0.455583049211903	0.540516841647612	0.954866069207078
Merged-chr14-15061374-4	chr14	15061277	15061477	+	927.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	240562.0	NM_001195229	674895.0	Mm.317563	NM_001034865	ENSMUSG00000042567	Nek10	Gm282	NIMA (never in mitosis gene a)- related kinase 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-154207440-2	chr4	154207340	154207540	+	936.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162977, intron 3 of 36)	intron (NM_001162977, intron 3 of 36)	36727.0	NM_001162977	230971.0	Mm.275216	NM_172273	ENSMUSG00000057751	Megf6	2600001P17Rik|Egfl3	multiple EGF-like-domains 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46328442-4	chr19	46328341	46328541	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_133694, exon 1 of 4)	5' UTR (NM_133694, exon 1 of 4)	257.0	NM_133694	68431.0	Mm.19973	NM_133694	ENSMUSG00000025226	Fbxl15	0710008C12Rik|Fbxo37	F-box and leucine-rich repeat protein 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-67789718-1	chr11	67789618	67789818	+	599.0	f1_c57bl6.idr	3' UTR (NM_001347057, exon 5 of 5)	3' UTR (NM_001347057, exon 5 of 5)	-8553.0	NM_001013013	68460.0	Mm.22167	NM_001013013	ENSMUSG00000033044	Dhrs7c	1110001P11Rik|AI120487|SRP-35	dehydrogenase/reductase (SDR family) member 7C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127602363-2	chr10	127602263	127602463	+	875.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 6 of 88)	ID_B1|SINE|B4	18785.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-110905693-3	chr13	110905598	110905798	+	810.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131193, intron 3 of 4)	L1MA4|LINE|L1	-1852.0	NR_131194	102636142.0	Mm.417611	NR_131194		4930526H09Rik	-	RIKEN cDNA 4930526H09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167950388-4	chr2	167950281	167950481	+	874.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011201, intron 1 of 8)	intron (NM_011201, intron 1 of 8)	18054.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-60626713-2	chr18	60626613	60626813	+	927.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-2408.0	NM_177340	104027.0	Mm.252321	NM_177340	ENSMUSG00000043079	Synpo	9030217H17Rik|9130229N11|9330140I15Rik|AW046661	synaptopodin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-146764808-4	chr5	146764690	146764890	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011669, intron 2 of 8)	MTC|LTR|ERVL-MaLR	30166.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32495480-4	chr2	32495378	32495578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39881.0	NM_153560	98952.0	Mm.4065	NM_153560	ENSMUSG00000039157	Fam102a	AI426465|C230093N12Rik|Eeig1	family with sequence similarity 102, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30136891-2	chr2	30136791	30136991	+	611.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146252, intron 3 of 11)	intron (NM_146252, intron 3 of 11)	3145.0	NM_146252	70296.0	Mm.19172	NM_146252	ENSMUSG00000039678	Tbc1d13	2600014A06Rik|BC025586	TBC1 domain family, member 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-38380339-4	chr18	38380252	38380452	+	885.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38555.0	NM_022996	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-79834980-4	chr10	79834887	79835087	+	877.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 3 of 4)	intron (NR_038088, intron 3 of 4)	13966.0	NM_030218	78906.0	Mm.33087	NM_030218	ENSMUSG00000035852	Misp	9130017N09Rik	mitotic spindle positioning	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-10878241-2	chr16	10878141	10878341	+	714.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36556.0	NR_131135	545180.0	Mm.373756	NR_131135	ENSMUSG00000095369	Gm21859	-	predicted gene, 21859	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-67484930-4	chr7	67484840	67485040	+	856.716675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-112082.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-98095571-4	chr1	98095458	98095658	+	994.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013626)	promoter-TSS (NM_013626)	74.0	NM_013626	18484.0	Mm.5121	NM_013626	ENSMUSG00000026335	Pam	PHM	peptidylglycine alpha-amidating monooxygenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-83746177-1	chr8	83746077	83746277	+	672.0	f1_balb.idr	Intergenic	B4A|SINE|B4	-4866.0	NM_001163031	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	0.0748031023150934	0.102775551611161	0.0937691773704027	0.0867180998480082	0.41160829822248	0.699038130917311	0.0957682238795403	1.33744914731011	4.46126223324498	0.0250160287951073	1
Merged-chr1-40404788-4	chr1	40404671	40404871	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24799.0	NM_001294171	17082.0	Mm.289824	NM_010743	ENSMUSG00000026069	Il1rl1	DER4|Fit-1|Ly84|ST2L|St2|St2-rs1|T1|T1/ST2	interleukin 1 receptor-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-59363241-4	chr4	59363140	59363340	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163288, intron 10 of 16)	intron (NM_001163288, intron 10 of 16)	75393.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	4.23406218508771	3.81760792864885	3.19036255911765	4.21370729618385	4.13701318093613	4.00417511005463	2.948619633327	4.75506459127593	0.246737611225515	0.639609904670783	0.982599433509505
Merged-chr4-150194042-3	chr4	150193908	150194108	+	771.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009802, intron 4 of 7)	intron (NM_009802, intron 4 of 7)	7127.0	NM_009802	12353.0	Mm.232523	NM_009802	ENSMUSG00000028972	Car6	Ca6|DOC1	carbonic anhydrase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-108998881-2	chr13	108998781	108998981	+	700.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011056, intron 2 of 16)	intron (NM_011056, intron 2 of 16)	-325863.0	NR_030644	100124489.0		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-21019263-2	chr14	21019207	21019407	+	604.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_009502, exon 15 of 21)	exon (NM_009502, exon 15 of 21)	33135.0	NM_018829	55946.0	Mm.376269	NM_018829	ENSMUSG00000021824	Ap3m1	1200013D09Rik|C78982|R75378	adaptor-related protein complex 3, mu 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-3181489-3	chr11	3181400	3181600	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030207, intron 4 of 32)	intron (NM_030207, intron 4 of 32)	11963.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97143326-1	chr11	97143226	97143426	+	544.0	f1_balb.idr	intron (NM_198100, intron 6 of 8)	intron (NM_198100, intron 6 of 8)	3093.0	NR_106094	102466822.0		NR_106094	ENSMUSG00000099286	Mir7235	Gm27986|mmu-mir-7235	microRNA 7235	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-62035165-2	chr15	62035058	62035258	+	575.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-2828.0	NR_132747	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-77516451-2	chr11	77516351	77516551	+	577.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026185, intron 1 of 1)	intron (NM_026185, intron 1 of 1)	1334.0	NM_026185	67477.0	Mm.432526	NM_026185	ENSMUSG00000000686	Abhd15	1300007F04Rik	abhydrolase domain containing 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-60712699-2	chr13	60712604	60712804	+	845.5	f0_balb.idr|f1_balb.idr	intron (NM_134062, intron 3 of 26)	MER58A|DNA|hAT-Charlie	73660.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	1.63511242981101	1.18138914578195	1.15443557047641	2.46116678307758	2.48594176239401	1.85104367026528	1.7881842547472	2.39518641990113	1.08170942381626	0.32184006560762	0.823903365381149
Merged-chr2-84831801-4	chr2	84831693	84831893	+	913.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4772.0	NM_013899	30059.0	Mm.21826	NM_013899	ENSMUSG00000027076	Timm10	Tim13|Timm13a	translocase of inner mitochondrial membrane 10	protein-coding	1.79266168954876	1.34469851006543	2.52169259375614	2.01140973397284	1.00198938740449	2.38339451211194	1.69352488912256	1.03579773069283	-0.833327055967579	0.478176392934186	0.928092227925527
Merged-chr10-45018169-4	chr10	45017987	45018187	+	955.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49127.0	NM_011156	19072.0	Mm.10281	NM_011156	ENSMUSG00000019849	Prep	AI047692|AI450383|D10Wsu136e|PEP|Pop	prolyl endopeptidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-158500194-4	chr2	158500093	158500293	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001291138)	TTS (NM_001291138)	-2419.0	NM_145635	246747.0	Mm.28800	NM_145635	ENSMUSG00000044405	Adig	SMAF-1|Smaf1	adipogenin	protein-coding	2.59298860947199	2.5146338340789	2.43008898477008	3.42482563871421	3.34010939949598	2.92957959111867	2.83316099077832	2.3738368938264	0.190048424345445	0.79018328213444	0.998431161219273
Merged-chr5-124468021-3	chr5	124467886	124468086	+	800.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030259, intron 3 of 3)	Tigger7|DNA|TcMar-Tigger	10249.0	NM_030259	80291.0	Mm.425280	NM_030259	ENSMUSG00000029401	Rilpl2	-	Rab interacting lysosomal protein-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-76857586-4	chr14	76857476	76857676	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	97445.0	NR_153763	73883.0	Mm.489041	NR_153763		4930431P22Rik	-	RIKEN cDNA 4930431P22 gene	ncRNA	5.15192179047198	5.34667866293643	4.40085531362347	4.84931493480072	5.08102421496469	5.5959410077245	4.88796215012898	4.98353848761624	0.21232406807973	0.529345793166311	0.949538200394407
Merged-chr18-34438943-2	chr18	34438843	34439043	+	696.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016927, intron 14 of 14)	intron (NM_016927, intron 14 of 14)	29520.0	NM_016927	53871.0	Mm.445792	NM_016927	ENSMUSG00000014503	Pkd2l2	TRPP5	polycystic kidney disease 2-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36675153-2	chr18	36675053	36675253	+	752.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146085, intron 10 of 11)	intron (NM_146085, intron 10 of 11)	-4062.0	NM_001360989	67843.0	Mm.273350	NM_026404	ENSMUSG00000033272	Slc35a4	2610030J16Rik	solute carrier family 35, member A4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-120660668-4	chr2	120660561	120660761	+	759.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51066.0	NM_001290807	66296.0	Mm.221900	NM_025475	ENSMUSG00000027285	Haus2	1700101G24Rik|2410007P03Rik|AU020217|Cep27	HAUS augmin-like complex, subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-95417501-4	chr11	95417405	95417605	+	876.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359107, intron 1 of 9)	intron (NM_001359107, intron 1 of 9)	3422.0	NM_001359107	20747.0	Mm.285454	NM_025287	ENSMUSG00000057522	Spop	AI315626|Pcif1|TEF2	speckle-type POZ protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-123375436-2	chr8	123375336	123375536	+	619.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359076, intron 1 of 16)	B1_Mus1|SINE|Alu	1725.0	NM_001286363	66855.0	Mm.178818	NM_025804	ENSMUSG00000001472	Tcf25	1100001J13Rik|1810041K11Rik|D8Ertd325e|Nulp1|mKIAA1049	transcription factor 25 (basic helix-loop-helix)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-125142206-2	chr5	125142106	125142306	+	837.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_011424, intron 1 of 46)	intron (NM_011424, intron 1 of 46)	37008.0	NM_001253905	20602.0	Mm.278646	NM_011424	ENSMUSG00000029478	Ncor2	N-CoR|SMRT|SMRTe	nuclear receptor co-repressor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-125393861-4	chr7	125393829	125394029	+	962.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25068.0	NM_001145759	75861.0	Mm.349600	NM_001145759		4930571K23Rik	AI428146	RIKEN cDNA 4930571K23 gene	protein-coding	3.1379416536029	1.69713381594672	2.67340145961489	3.80371121869323	3.23698288089322	3.17226172878499	3.88150717403082	3.06714952281318	0.532266668070464	0.451826013668573	0.918192498644231
Merged-chr1-79776083-4	chr1	79775998	79776198	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081210)	promoter-TSS (NM_001081210)	80.0	NM_001081210	69163.0	Mm.238455	NM_001081210	ENSMUSG00000026248	Mrpl44	1810030E18Rik|5730593H20Rik|AI463302	mitochondrial ribosomal protein L44	protein-coding	7.2103295237988	7.43713726519456	7.16342501403677	7.37683655736488	6.2299731601092	6.40390248296836	5.57280883427774	6.28910348750869	-1.21323757850393	1.13843579498783e-09	1.84580441463027e-07
Merged-chr4-141507077-4	chr4	141506990	141507190	+	817.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347235, intron 3 of 14)	intron (NM_001347235, intron 3 of 14)	31507.0	NM_001347235	56381.0	Mm.299906	NM_019763	ENSMUSG00000040761	Spen	Mint|mKIAA0929	spen family transcription repressor	protein-coding	0.73083452932222	1.21269311510466	1.77953975972595	1.5231261272501	0.733980162478273	1.22255508231503	1.79655324825171	0.753836127354149	-0.548149389752055	0.706362488973797	0.998431161219273
Merged-chr19-45803722-1	chr19	45803622	45803822	+	599.0	f1_c57bl6.idr	intron (NM_145703, intron 1 of 9)	intron (NM_145703, intron 1 of 9)	8569.0	NM_001276358	80906.0	Mm.213204	NM_030716	ENSMUSG00000025221	Kcnip2	KChIP2	Kv channel-interacting protein 2	protein-coding	-0.27664845134737	-0.260848899521793	-0.266004627505491	0.643134622345099	-0.275656653605086	-0.259689367190872	-0.072605202279623	0.0574740574066128	-1.33467654356633	0.57763722476489	1
Merged-chr7-27185218-2	chr7	27185118	27185318	+	657.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-4069.0	NM_019394	12587.0	Mm.262447	NM_019394	ENSMUSG00000089661	Mia	CD-RAP|Cdrap|Mia1	melanoma inhibitory activity	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116738631-2	chr11	116738531	116738731	+	757.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13536.0	NR_003364	193217.0	Mm.100084	NR_003364		BC018473	-	cDNA sequence BC018473	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28226224-4	chr17	28226136	28226336	+	946.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027185, exon 9 of 11)	exon (NM_027185, exon 9 of 11)	-6518.0	NM_011145	19015.0	Mm.328914	NM_011145	ENSMUSG00000002250	Ppard	NUC-1|NUC1|Nr1c2|PPAR-beta|PPAR-delta|PPAR[b]|PPARdelta|Pparb|Pparb/d	peroxisome proliferator activator receptor delta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45013054-1	chr7	45012954	45013154	+	899.0	f1_balb.idr	promoter-TSS (NR_106021)	promoter-TSS (NR_106021)	-567.0	NR_106021	102466218.0		NR_106021	ENSMUSG00000098839	Mir7054	Gm27557|mmu-mir-7054	microRNA 7054	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-94698234-3	chr9	94698085	94698285	+	920.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177909, intron 2 of 15)	intron (NM_177909, intron 2 of 15)	28293.0	NM_177909	331004.0	Mm.326125	NM_177909	ENSMUSG00000031129	Slc9a9	5730527A11Rik|9930105B05|AI854429|Nhe9	solute carrier family 9 (sodium/hydrogen exchanger), member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-24338457-4	chr13	24338343	24338543	+	981.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001284519, intron 2 of 17)	MTEa|LTR|ERVL-MaLR	11039.0	NM_001111110	12763.0	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-134569921-2	chr5	134569821	134570021	+	854.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2155.0	NR_106087	102465708.0		NR_106087	ENSMUSG00000106323	Mir7228	mmu-mir-7228	microRNA 7228	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-58403665-1	chr10	58403565	58403765	+	546.0	f1_balb.idr	intron (NM_001359116, intron 2 of 9)	intron (NM_001359116, intron 2 of 9)	9292.0	NM_001346676	110829.0	Mm.57734	NM_026148	ENSMUSG00000019920	Lims1	2310016J22Rik|4921524A02Rik|AI507642|AU021743|AW551584|C430041B13Rik|Lims1l|PINCH|PINCH1	LIM and senescent cell antigen-like domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-99332814-4	chr10	99332726	99332926	+	950.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	69595.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-3641224-4	chr2	3641103	3641303	+	987.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72255.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5612688-2	chr17	5612588	5612788	+	546.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	120088.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-164827531-2	chr2	164827431	164827631	+	748.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_028028)	TTS (NM_028028)	1003.0	NM_029370	75642.0	Mm.159541	NM_029370	ENSMUSG00000017767	Spata25	1700020C07Rik|Tsg23	spermatogenesis associated 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-53439092-4	chr10	53438983	53439183	+	920.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	29201.0	NR_152767	102640074.0	Mm.412957	NR_152767		Gm36229	-	predicted gene, 36229	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-129234696-3	chr6	129234628	129234828	+	797.527771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040268, intron 2 of 3)	intron (NR_040268, intron 2 of 3)	3317.0	NR_040265	76432.0	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76198170-2	chr15	76198070	76198270	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_201393)	promoter-TSS (NM_201393)	39.0	NM_201393	18810.0	Mm.234912	NM_011117	ENSMUSG00000022565	Plec	AA591047|AU042537|EBS1|PCN|PLTN|Plec1	plectin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-108993397-2	chr9	108993297	108993497	+	739.166626	f1_balb.idr|f1_c57bl6.idr	intron (NR_153430, intron 1 of 13)	intron (NR_153430, intron 1 of 13)	1495.0	NR_153430	270198.0	Mm.132391	NM_173019	ENSMUSG00000025648	Pfkfb4	C230090D14	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-65866399-2	chr5	65866299	65866499	+	687.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081105, intron 1 of 2)	intron (NM_001081105, intron 1 of 2)	2830.0	NM_001081105	74734.0	Mm.20323	NM_001081105	ENSMUSG00000029204	Rhoh	5830400A04Rik|AU019774|Arhh	ras homolog family member H	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-66279821-4	chr5	66279725	66279925	+	787.19165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302833, intron 7 of 12)	L1MEg|LINE|L1	18984.0	NM_027602	70918.0	Mm.23166	NM_027602	ENSMUSG00000029206	Nsun7	4921525L17Rik	NOL1/NOP2/Sun domain family, member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-116193097-4	chr6	116193038	116193238	+	967.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177412, intron 1 of 5)	CpG	236.0	NM_177412	330401.0	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100501845-2	chr7	100501780	100501980	+	993.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur3|SINE|Alu	8522.0	NM_011671	22228.0	Mm.171378	NM_011671	ENSMUSG00000033685	Ucp2	Slc25a8|UCP 2|UCPH	uncoupling protein 2 (mitochondrial, proton carrier)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-121091179-4	chr11	121091054	121091254	+	995.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10015.0	NM_145373	209588.0	Mm.69553	NM_145373	ENSMUSG00000025165	Sectm1a	BC010462	secreted and transmembrane 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122637963-3	chr5	122637841	122638041	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5970.0	NM_001038839	18439.0	Mm.42026	NM_011027	ENSMUSG00000029468	P2rx7	AI467586|P2X(7)|P2X7R	purinergic receptor P2X, ligand-gated ion channel, 7	protein-coding	1.18200697760151	1.28366497732698	2.17724365056579	2.11368784381449	2.62222426496357	2.1332127903579	2.77456848735191	2.24111235863685	1.70457139488528	0.0873649694525971	0.45416156997065
Merged-chr16-93820403-2	chr16	93820303	93820503	+	558.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11718.0	NM_001045529	338467.0	Mm.287329	NM_001045529	ENSMUSG00000039456	Morc3	1110051N18Rik|AI452146|BF318192|D16Jhu32e|NXP2|Zcwcc3	microrchidia 3	protein-coding	-0.446325955288988	-0.805856900465229	-0.808857063420984	-0.286002941185794	-0.814397493751201	-0.803092924973584	-0.808198674337053	-0.810755415922132	-3.06173579201342	0.302422500462055	1
Merged-chr10-93311016-3	chr10	93310913	93311113	+	999.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_013508, exon 1 of 5)	5' UTR (NM_013508, exon 1 of 5)	146.0	NM_001322268	13713.0	Mm.4454	NM_013508	ENSMUSG00000008398	Elk3	D430049E23Rik|Erp|Etrp|Net|Sap-2	ELK3, member of ETS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131115564-2	chr1	131115464	131115664	+	574.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17721.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-91096696-4	chr1	91096607	91096807	+	969.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008515, intron 10 of 22)	intron (NM_008515, intron 10 of 22)	43263.0	NM_001310732	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-45049581-2	chr19	45049481	45049681	+	596.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001362379, intron 2 of 10)	intron (NM_001362379, intron 2 of 10)	2005.0	NM_001362381	94280.0	Mm.36169	NM_053197	ENSMUSG00000025212	Sfxn3	-	sideroflexin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-153899150-2	chr1	153899050	153899250	+	985.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_106194)	promoter-TSS (NR_106194)	-776.0	NR_106194	102466257.0		NR_106194	ENSMUSG00000099227	Mir8114	Gm27382|mmu-mir-8114	microRNA 8114	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-41629662-2	chr7	41629562	41629762	+	622.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-3869.0	NM_001360675	67607.0	Mm.384626	NM_023363	ENSMUSG00000074165	Zfp788	2810426N06Rik|AI256342|AI605193	zinc finger protein 788	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85256811-2	chr12	85256711	85256911	+	598.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175337, intron 5 of 11)	intron (NM_175337, intron 5 of 11)	-10826.0	NR_105903	102466769.0		NR_105903	ENSMUSG00000098263	Mir6938	Gm27519|mmu-mir-6938	microRNA 6938	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-19049768-6	chr2	19049605	19049805	+	909.865051	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51386.0	NR_024323	74629.0	Mm.117687	NR_024323	ENSMUSG00000026736	4930426L09Rik	-	RIKEN cDNA 4930426L09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-60892386-3	chr19	60892264	60892464	+	842.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018869, intron 1 of 15)	intron (NM_018869, intron 1 of 15)	2615.0	NM_018869	14773.0	Mm.279400	NM_018869	ENSMUSG00000003228	Grk5	Gprk5	G protein-coupled receptor kinase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117810147-4	chr11	117810040	117810240	+	882.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009304, intron 1 of 3)	CpG	473.0	NM_009304	20973.0	Mm.468228	NM_009304	ENSMUSG00000048277	Syngr2	Clast2|cellugyrin	synaptogyrin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-38039968-4	chr5	38039857	38040057	+	886.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359398, intron 1 of 9)	intron (NM_001359398, intron 1 of 9)	727.0	NM_026959	71116.0	Mm.18959	NM_026959	ENSMUSG00000029125	Stx18	1810035L21Rik|4933425D03Rik|AU041562	syntaxin 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-34416080-4	chr18	34415980	34416180	+	924.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016927, intron 4 of 14)	intron (NM_016927, intron 4 of 14)	6657.0	NM_016927	53871.0	Mm.445792	NM_016927	ENSMUSG00000014503	Pkd2l2	TRPP5	polycystic kidney disease 2-like 2	protein-coding	2.61912484777596	4.01651568251435	4.19422098485583	3.38083496663903	2.87206121146377	1.74281194939179	3.79527605267033	3.47582729471813	-0.767412228098719	0.268205368708181	0.771315439539971
Merged-chr2-59200821-2	chr2	59200721	59200921	+	612.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 1 of 20)	intron (NM_175464, intron 1 of 20)	39971.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-75442711-1	chr9	75442611	75442811	+	660.0	f1_balb.idr	intron (NM_001039522, intron 1 of 11)	intron (NM_001039522, intron 1 of 11)	1187.0	NM_001039522	235497.0	Mm.41508	NM_001006122	ENSMUSG00000042487	Leo1	Gm185	Leo1, Paf1/RNA polymerase II complex component	protein-coding	0.207347327805562	0.849215379963231	0.220998317949702	0.757728024730895	0.789607450187506	0.229113497991091	0.406458629659327	0.216771490574019	-0.680948216355183	0.729446040706853	1
Merged-chr11-79522162-4	chr11	79522076	79522276	+	785.716675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077496, intron 1 of 1)	intron (NM_001077496, intron 1 of 1)	1586.0	NM_001077496	216984.0	Mm.439665	NM_001077496	ENSMUSG00000093938	Evi2b	Evi-2|Evi2	ecotropic viral integration site 2b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-138267879-4	chr1	138267786	138267986	+	999.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5852.0	NM_177397	338375.0	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-108630579-2	chr12	108630479	108630679	+	623.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163395, intron 1 of 12)	intron (NM_001163395, intron 1 of 12)	-5174.0	NM_001163396	14026.0	Mm.238841	NM_007965	ENSMUSG00000021262	Evl	AI528774|b2b2600Clo	Ena-vasodilator stimulated phosphoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-75306172-2	chr18	75306072	75306272	+	800.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-8843.0	NR_045393	100503117.0	Mm.250517	NR_045393	ENSMUSG00000102047	2010010A06Rik	5033420E22Rik	RIKEN cDNA 2010010A06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-132931654-2	chr7	132931554	132931754	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_207302, intron 1 of 9)	CpG	512.0	NM_001362198	360216.0	Mm.389984	NM_207302	ENSMUSG00000030967	Zranb1	9330160G10Rik|D7Wsu87e|Gm1956|Trabid	zinc finger, RAN-binding domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-97831742-6	chr15	97831746	97831946	+	865.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001204276)	promoter-TSS (NM_001204276)	-79.0	NM_001204276	56233.0	Mm.384027	NM_019572	ENSMUSG00000022475	Hdac7	5830434K02Rik|HD7|HD7a|Hdac7a|mFLJ00062	histone deacetylase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-48825695-4	chr17	48825599	48825799	+	974.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-106883.0	NM_027452	70530.0	Mm.133607	NM_027452	ENSMUSG00000040490	Lrfn2	5730420O05Rik|SALM1|mKIAA1246	leucine rich repeat and fibronectin type III domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-63031916-2	chr10	63031816	63032016	+	774.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026085, intron 1 of 9)	Lx6|LINE|L1	7404.0	NM_026085	67307.0	Mm.368563	NM_026085	ENSMUSG00000020072	Pbld2	3110049J23Rik|Mawbp	phenazine biosynthesis-like protein domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-151070006-4	chr5	151069914	151070114	+	949.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359985, intron 3 of 12)	intron (NM_001359985, intron 3 of 12)	117407.0	NM_013823	16591.0	Mm.6500	NM_013823	ENSMUSG00000058488	Kl	alpha-kl	klotho	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-111145720-4	chr9	111145596	111145796	+	958.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027742, intron 3 of 13)	intron (NM_027742, intron 3 of 13)	27585.0	NM_001164838	71268.0	Mm.302287	NM_027742	ENSMUSG00000032497	Lrrfip2	5133400F20Rik|AI850587	leucine rich repeat (in FLII) interacting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-61426096-4	chr3	61425990	61426190	+	918.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61583.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-98711213-1	chr7	98711113	98711313	+	875.0	f0_balb.idr	intron (NM_001355114, intron 4 of 5)	intron (NM_001355114, intron 4 of 5)	7966.0	NM_028410	72981.0	Mm.4428	NM_028410	ENSMUSG00000030753	Thap12	2900052B10Rik|Dap4|Prkrir|Rpkrir	THAP domain containing 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-32113304-2	chr12	32113204	32113404	+	869.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52025.0	NM_011158	19088.0	Mm.25594	NM_011158	ENSMUSG00000002997	Prkar2b	AI451071|AW061005|PKARIIbeta|Pkarb2|RII(beta)	protein kinase, cAMP dependent regulatory, type II beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-55556904-2	chr15	55556804	55557004	+	659.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134092)	promoter-TSS (NM_134092)	408.0	NM_026759	68537.0	Mm.236795	NM_026759	ENSMUSG00000022370	Mrpl13	1110002D09Rik	mitochondrial ribosomal protein L13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-91221726-3	chr13	91221621	91221821	+	852.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025770, intron 1 of 7)	intron (NM_025770, intron 1 of 7)	2266.0	NM_025770	66795.0	Mm.235385	NM_025770	ENSMUSG00000021619	Atg10	5330424L23Rik|5430428K15Rik|AI852123|APG10|Agp10|Apg10l|Apg10p|Atg10l	autophagy related 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-51818846-2	chr11	51818746	51818946	+	684.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357588, intron 11 of 12)	intron (NM_001357588, intron 11 of 12)	38635.0	NM_199299	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-85322126-2	chr9	85322026	85322226	+	719.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001160378, exon 3 of 3)	3' UTR (NM_001160378, exon 3 of 3)	4998.0	NM_001160378	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-31933795-8	chr16	31933666	31933866	+	984.03125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172822)	promoter-TSS (NM_172822)	-85.0	NM_172822	239827.0	Mm.440388	NM_172822	ENSMUSG00000045625	Pigz	F630022B06Rik	phosphatidylinositol glycan anchor biosynthesis, class Z	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30349323-2	chr2	30349223	30349423	+	782.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346806, intron 5 of 12)	intron (NM_001346806, intron 5 of 12)	9993.0	NM_139302	227700.0	Mm.33343	NM_139302	ENSMUSG00000026860	Sh3glb2	SPAS-1	SH3-domain GRB2-like endophilin B2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-148212135-4	chr6	148212031	148212231	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015615)	promoter-TSS (NR_015615)	-157.0	NR_015615	320737.0	Mm.137858	NR_015615		4732416N19Rik	-	RIKEN cDNA 4732416N19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-8244133-2	chr14	8244033	8244233	+	579.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_053115, intron 11 of 14)	intron (NM_053115, intron 11 of 14)	14706.0	NM_001161667	93732.0	Mm.28700	NM_053115	ENSMUSG00000021751	Acox2	THCCox	acyl-Coenzyme A oxidase 2, branched chain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124599975-2	chr5	124599890	124600090	+	908.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026486, intron 3 of 18)	MTC|LTR|ERVL-MaLR	1241.0	NM_026486	67978.0	Mm.1158	NM_026486		Tctn2	4432405B04Rik|Tect2	tectonic family member 2	protein-coding	0.609410111676633	0.852631750026751	1.02219447418199	0.353662991788546	0.616234192004218	0.561921329003701	0.539167354722991	0.354588635975647	-1.38717843591353	0.411626430268807	1
Merged-chr19-17326725-2	chr19	17326626	17326826	+	653.5	f0_balb.idr|f1_c57bl6.idr	3' UTR (NM_001136484, exon 3 of 3)	3' UTR (NM_001136484, exon 3 of 3)	12779.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	2.29801095937022	1.08113212021549	1.29058785031251	1.84670707733567	1.76276913394505	1.99023551358268	1.06458015746803	1.9637487891208	0.0314826644219773	0.978806249743489	0.998431161219273
Merged-chr15-58877075-2	chr15	58876975	58877175	+	767.833313	f1_balb.idr|f1_c57bl6.idr	TTS (NM_026642)	TTS (NM_026642)	4426.0	NM_026642	68260.0	Mm.278805	NM_026642	ENSMUSG00000037085	Trmt12	4632406N01Rik|AI449275|Tyw2	tRNA methyltranferase 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-79141637-4	chr12	79141561	79141761	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009705, intron 2 of 7)	MMAR1|DNA|TcMar-Mariner	10873.0	NM_009705	11847.0	Mm.3506	NM_009705	ENSMUSG00000021125	Arg2	AII|AU022422	arginase type II	protein-coding	2.86297785641466	3.56229555315057	3.69313381538804	3.03154281122774	4.01113846821483	3.48972309589474	4.26936529942434	4.33007846062904	1.08876213377353	0.0354329676808737	0.266440697544255
Merged-chr10-8007448-4	chr10	8007349	8007549	+	986.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51326.0	NM_138667	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-107867260-4	chr3	107867147	107867347	+	874.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9983.0	NM_133867	99662.0	Mm.108491	NM_133867	ENSMUSG00000040600	Eps8l3	AI504489|Eps8r3	EPS8-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118811139-4	chr9	118811044	118811244	+	998.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 4 of 13)	ORR1E|LTR|ERVL-MaLR	99452.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-51596410-2	chr10	51596310	51596510	+	558.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-5950.0	NM_029894	77296.0	Mm.30588	NM_029894	ENSMUSG00000019909	Fam162b	9430073N08Rik	family with sequence similarity 162, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-14362172-5	chr16	14362059	14362259	+	988.840027	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008576, intron 1 of 30)	intron (NM_008576, intron 1 of 30)	601.0	NM_008576	17250.0	Mm.196634	NM_008576	ENSMUSG00000023088	Abcc1	Abcc1a|Abcc1b|MRP|Mdrap|Mrp1	ATP-binding cassette, sub-family C (CFTR/MRP), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-36766185-1	chr9	36766085	36766285	+	595.0	f1_balb.idr	intron (NM_008408, intron 1 of 17)	intron (NM_008408, intron 1 of 17)	1393.0	NM_008408	16430.0	Mm.2863	NM_008408	ENSMUSG00000032116	Stt3a	AA408947|BB081708|Itm1	STT3, subunit of the oligosaccharyltransferase complex, homolog A (S. cerevisiae)	protein-coding	1.79290345146661	2.05498130968856	0.970727318046665	0.944983725535132	2.74749298343126	1.30961793332184	0.977887322913203	2.89780394560787	1.69279756400757	0.167676040105898	0.633697121752592
Merged-chr2-32215342-2	chr2	32215242	32215442	+	615.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159634, intron 16 of 31)	intron (NM_001159634, intron 16 of 31)	-21341.0	NM_145145	99011.0	Mm.31192	NM_145145	ENSMUSG00000039254	Pomt1	AI505244	protein-O-mannosyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-146352384-4	chr3	146352315	146352515	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26529.0	NR_033542	100038607.0	Mm.365888	NR_033542	ENSMUSG00000105602	Gm10636	-	predicted gene 10636	ncRNA	4.34251422028358	5.33058171348895	4.91826266570792	4.96438911022159	2.58318253491536	4.39028311850727	4.11862224140425	4.12044993378257	-1.25149393307813	0.00647403196704718	0.0806319400075766
Merged-chr11-34011654-2	chr11	34011554	34011754	+	770.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_155520, intron 4 of 4)	intron (NR_155520, intron 4 of 4)	-18461.0	NM_001190886	70357.0	Mm.252514	NM_027398	ENSMUSG00000053519	Kcnip1	KCHIP1|Kchip1.2	Kv channel-interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-15375242-2	chr17	15375142	15375342	+	860.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_007865, exon 1 of 11)	5' UTR (NM_007865, exon 1 of 11)	581.0	NM_007865	13388.0	Mm.4875	NM_007865	ENSMUSG00000014773	Dll1	Delta1	delta like canonical Notch ligand 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-48833840-4	chr16	48833745	48833945	+	976.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8707.0	NM_020509	57262.0	Mm.441868	NM_020509	ENSMUSG00000061100	Retnla	1810019L16Rik|Fizz-1|Fizz1|HIMF|RELM-alpha|RELMa|RELMalpha|Xcp2	resistin like alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-45519779-2	chr4	45519679	45519879	+	614.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033306, intron 1 of 5)	L2a|LINE|L2	11049.0	NM_001033306	230126.0	Mm.251716	NM_001033306	ENSMUSG00000044813	Shb	BC028832	src homology 2 domain-containing transforming protein B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-105468717-1	chr4	105468617	105468817	+	673.0	f1_balb.idr	Intergenic	Intergenic	311370.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	1.02533429914492	1.78863479001434	1.71407027519425	0.714618063051414	1.03415792077545	0.742814998156329	0.947213195094813	1.23406541684788	-1.57130422089335	0.260581584965767	0.761683739585661
Merged-chr14-54913101-1	chr14	54913001	54913201	+	812.0	f0_balb.idr	promoter-TSS (NM_001360406)	promoter-TSS (NM_001360406)	31.0	NM_001360406	59049.0	Mm.27435	NM_021551	ENSMUSG00000022199	Slc22a17	1700094C23Rik|24p3R|AU041908|AW555662|BOIT|Boct	solute carrier family 22 (organic cation transporter), member 17	protein-coding	0.115367630910446	0.128227263363407	0.123966006683961	0.668410592931114	0.116157497844098	0.301037212492795	0.416777742057532	0.593877183104647	0.597492122355914	0.77381035322044	1
Merged-chr9-59537854-4	chr9	59537731	59537931	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-1709.0	NM_010421	15211.0	Mm.2284	NM_010421	ENSMUSG00000025232	Hexa	Hex-1	hexosaminidase A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30473668-2	chr2	30473568	30473768	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_030244, exon 1 of 1)	exon (NM_030244, exon 1 of 1)	531.0	NM_030244	72500.0	Mm.295464	NM_030244	ENSMUSG00000089762	Ier5l	2610524G09Rik	immediate early response 5-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95142000-3	chr3	95141896	95142096	+	956.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027206, intron 1 of 1)	intron (NM_027206, intron 1 of 1)	364.0	NM_027206	69769.0	Mm.34368	NM_027206	ENSMUSG00000013707	Tnfaip8l2	1810019A08Rik|AW610835|TIPE2	tumor necrosis factor, alpha-induced protein 8-like 2	protein-coding	1.8204005226962	2.05016925216056	1.85472850917101	1.6674863202333	1.8357765288378	2.46727338267456	1.13976728980829	1.33851641842452	-0.0958859020011222	0.929240645839055	0.998431161219273
Merged-chr16-3894931-4	chr16	3894850	3895050	+	993.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_153801)	TTS (NR_153801)	10331.0	NM_001290689	74763.0	Mm.28403	NM_029090	ENSMUSG00000005982	Naa60	1200013P24Rik|AI315146|HAT4|Nat15|NatF	N(alpha)-acetyltransferase 60, NatF catalytic subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-13687789-2	chr17	13687689	13687889	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72752.0	NR_151731	17356.0	Mm.59167	NM_010806	ENSMUSG00000068036	Afdn	5033403D15Rik|AF6|Af-6|Afadin|Gm314|I-afadin|Mllt4|S-afadin	afadin, adherens junction formation factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83704970-4	chr11	83704876	83705076	+	769.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081957, intron 2 of 2)	ORR1D1|LTR|ERVL-MaLR	920.0	NM_001081957	100034251.0	Mm.24097	NM_001081957	ENSMUSG00000069792	Wfdc17	Amwap|Gm11428	WAP four-disulfide core domain 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-80468125-4	chr18	80468019	80468219	+	998.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026295, intron 1 of 12)	intron (NM_026295, intron 1 of 12)	1548.0	NM_026295	67655.0	Mm.312893	NM_026295	ENSMUSG00000033323	Ctdp1	4930563P03Rik|AW553592	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1	protein-coding	-1.5061220274826	-1.47360709383584	-1.48343987814663	-1.49151681994238	-1.50383953926072	-1.47147628845725	-1.0170701920923	-1.49007105122263	2.15652851593596	0.535359572134045	1
Merged-chr11-49846716-4	chr11	49846605	49846805	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163672)	promoter-TSS (NM_001163672)	-46.0	NM_001163671	26420.0	Mm.68933	NM_016961	ENSMUSG00000020366	Mapk9	AI851083|JNK2|Prkm9|p54aSAPK	mitogen-activated protein kinase 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-100737861-4	chr15	100737780	100737980	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5143.0	NR_045782	619313.0	Mm.123436	NR_045781	ENSMUSG00000116504	I730030J21Rik	-	RIKEN cDNA I730030J21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-134066769-2	chr1	134066669	134066869	+	934.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12386.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-87690993-4	chr10	87690833	87691033	+	891.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-167332.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-105818097-2	chr3	105817997	105818197	+	827.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_045845)	TTS (NR_045845)	2530.0	NR_045845	433637.0	Mm.331285	NR_045845	ENSMUSG00000104835	Gm5547	EG433637	predicted gene 5547	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-130092608-3	chr6	130092505	130092705	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013793, intron 3 of 7)	intron (NM_013793, intron 3 of 7)	-25334.0	NM_001252577	16635.0	Mm.333431	NM_010649	ENSMUSG00000079852	Klra4	Chok|Klra32|Klra33|Ly-49d|Ly49d|ly49r<129>	killer cell lectin-like receptor, subfamily A, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-99261882-5	chr10	99261803	99262003	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1328.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-31654886-4	chr12	31654789	31654989	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028002)	promoter-TSS (NM_028002)	20.0	NM_001163126	238123.0	Mm.173068	NM_001163126	ENSMUSG00000035933	Cog5	5430405C01Rik|C87247|D18362|GOLTC1|GTC90	component of oligomeric golgi complex 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-76996711-2	chr11	76996590	76996790	+	771.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1907.0	NM_010484	15567.0	Mm.300318	NM_010484	ENSMUSG00000020838	Slc6a4	5-HTT|AI323329|Htt|Sert	solute carrier family 6 (neurotransmitter transporter, serotonin), member 4	protein-coding	-0.303126377567029	-0.128581440440053	-0.14658072047438	-0.29930838463023	-0.302562314432001	-0.293233247019114	0.099833114446758	0.068657480545412	1.54196466206443	0.518630631003313	1
Merged-chr13-56615424-4	chr13	56615293	56615493	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155548, intron 2 of 16)	intron (NR_155548, intron 2 of 16)	5807.0	NR_155548	21810.0	Mm.14455	NM_009369	ENSMUSG00000035493	Tgfbi	68kDa|AI181842|AI747162|Beta-ig|big-h3	transforming growth factor, beta induced	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-5193642-3	chr10	5193542	5193742	+	810.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001079686, intron 1 of 54)	URR1A|DNA|hAT-Charlie	1065.0	NM_001079686	64009.0	Mm.331626	NM_022027	ENSMUSG00000096054	Syne1	8B|A330049M09Rik|BE692247|C130039F11Rik|CPG2|KASH1|Myne1|mKIAA1756|myne-1	spectrin repeat containing, nuclear envelope 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117412840-4	chr10	117412748	117412948	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	34587.0	NR_152734	102634600.0	Mm.399106	NR_152734	ENSMUSG00000112344	Gm32141	-	predicted gene, 32141	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-24101062-4	chr5	24100984	24101184	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161800, intron 1 of 9)	CpG	494.0	NM_001161800	52323.0	Mm.273768	NM_026448	ENSMUSG00000028986	Klhl7	2700038B03Rik|D5Ertd363e|SBBI26	kelch-like 7	protein-coding	0.71850012263778	1.08985801893403	0.59221300147504	1.01048062796564	0.723182225980805	0.960360698857547	1.05528506033307	1.01662560763019	0.393013296327545	0.787612481020414	1
Merged-chr1-9703244-2	chr1	9703220	9703420	+	625.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-3111.0	NM_008651	17864.0	Mm.479	NM_008651	ENSMUSG00000025912	Mybl1	A-myb|G1-419-6|repro9	myeloblastosis oncogene-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-106715952-2	chr13	106715852	106716052	+	744.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	221006.0	NM_001360897	76582.0	Mm.132208	NM_029665	ENSMUSG00000042590	Ipo11	1700081H05Rik|2510001A17Rik|AI314624|AW555235|E330021B14Rik|Ranbp11	importin 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-34964375-3	chr8	34964295	34964495	+	575.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175091, intron 1 of 26)	intron (NM_175091, intron 1 of 26)	1295.0	NM_175091	21951.0	Mm.88364	NM_175091	ENSMUSG00000031529	Tnks	4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	protein-coding	-0.13516917387841	-0.114944818936795	-0.121507254238095	-0.126611771220937	0.819763592562873	-0.113473673508336	0.635661584993435	-0.125717358581435	4.14217351523566	0.0763005808781898	1
Merged-chr9-20996712-2	chr9	20996612	20996812	+	773.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-6025.0	NM_023167	66163.0	Mm.427576	NM_023167	ENSMUSG00000003299	Mrpl4	1110017G11Rik	mitochondrial ribosomal protein L4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-46276915-2	chr11	46276815	46277015	+	663.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252459, intron 7 of 30)	intron (NM_001252459, intron 7 of 30)	35443.0	NM_001252460	76884.0	Mm.154358	NM_133769	ENSMUSG00000020340	Cyfip2	1500004I01Rik|6430511D02Rik|AA930218|AU022376|Pir121|mKIAA1168	cytoplasmic FMR1 interacting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-39298880-2	chr18	39298780	39298980	+	552.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361073, intron 19 of 21)	intron (NM_001361073, intron 19 of 21)	188365.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-74638597-4	chr11	74638484	74638684	+	966.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001013784, exon 4 of 4)	3' UTR (NM_001013784, exon 4 of 4)	-10911.0	NM_001081158	74148.0	Mm.214574	NM_001081158	ENSMUSG00000020741	Cluh	1300001I01Rik|Kiaa0664|mKIAA0664	clustered mitochondria (cluA/CLU1) homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5912863-4	chr19	5912757	5912957	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291078)	promoter-TSS (NM_001291078)	14.0	NM_011262	19708.0	Mm.2651	NM_011262	ENSMUSG00000024826	Dpf2	2210010M07Rik|BAF45D|Req|ubi-d4	D4, zinc and double PHD fingers family 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-73226734-2	chr17	73226634	73226834	+	596.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081071, intron 5 of 5)	L2|LINE|L2	118749.0	NM_001177967	225010.0	Mm.329194	NM_001081071	ENSMUSG00000054469	Lclat1	AI181996|Agpat8|Alcat1|Gm91|Lycat	lysocardiolipin acyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-7667476-4	chr10	7667370	7667570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145706)	promoter-TSS (NM_145706)	-34.0	NM_145706	69912.0	Mm.299887	NM_145706	ENSMUSG00000040034	Nup43	2610016K01Rik|2610529I12Rik|AA409950|p42	nucleoporin 43	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-45693690-4	chr13	45693578	45693778	+	931.966675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199304, intron 5 of 6)	intron (NM_001199304, intron 5 of 6)	186234.0	NM_025508	66355.0	Mm.290802	NM_025508	ENSMUSG00000000253	Gmpr	2310004P21Rik|AV028449|GMPR 1	guanosine monophosphate reductase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-133363538-1	chr6	133363438	133363638	+	556.0	f1_balb.idr	Intergenic	RMER17B|LTR|ERVK	71322.0	NM_027784	232426.0	Mm.158689	NM_027784	ENSMUSG00000055594	5530400C23Rik	GRP	RIKEN cDNA 5530400C23 gene	protein-coding	0.385639546944197	-0.0713103324147164	-0.0764890794859018	-0.0804856287995528	-0.0861353275034445	-0.0701431202283631	0.257532229266415	0.644921582782965	1.2781868847475	0.579350077260221	1
Merged-chr15-75925077-2	chr15	75924977	75925177	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357005, intron 10 of 10)	intron (NM_001357005, intron 10 of 10)	-3517.0	NM_025412	66194.0	Mm.250599	NM_025412	ENSMUSG00000022571	Pycrl	1110058B13Rik|2700073G24Rik|Pycr3	pyrroline-5-carboxylate reductase-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-50851183-2	chr11	50851083	50851283	+	723.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_173372, exon 2 of 11)	exon (NM_173372, exon 2 of 11)	498.0	NM_173372	108072.0	Mm.134265	NM_173372	ENSMUSG00000000617	Grm6	BC021919|Gm3|Gprc1f|mGluR6|nerg1|nob2|nob3|nob4	glutamate receptor, metabotropic 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-14250351-4	chr2	14250247	14250447	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008625, intron 4 of 29)	intron (NM_008625, intron 4 of 29)	-10656.0	NR_030609	100124488.0		NR_030609	ENSMUSG00000077897	Mir511	Mirn511|mir-511|mmu-mir-511	microRNA 511	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5588402-2	chr17	5588302	5588502	+	923.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	95802.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127598371-2	chr10	127598271	127598471	+	756.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 6 of 88)	B3A|SINE|B2	22777.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-103033014-4	chr11	103032957	103033157	+	976.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008707, intron 1 of 11)	intron (NM_008707, intron 1 of 11)	4514.0	NM_008707	18107.0	Mm.10265	NM_008707	ENSMUSG00000020936	Nmt1	AW536594	N-myristoyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-44053615-4	chr17	44053543	44053743	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25159.0	NM_001168620	83965.0	Mm.30145	NM_032003	ENSMUSG00000023960	Enpp5	AW061004|D17Abb1e|E-NPP 5	ectonucleotide pyrophosphatase/phosphodiesterase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-45622942-2	chr2	45622842	45623042	+	918.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73663.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-58520476-4	chr3	58520375	58520575	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-5346.0	NM_001005509	229317.0	Mm.21617	NM_001005509	ENSMUSG00000027810	Eif2a	D030048D22|D3Ertd194e	eukaryotic translation initiation factor 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-59786104-4	chr4	59785961	59786161	+	639.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2206.0	NM_001013577	66209.0	Mm.51988	NM_001013577	ENSMUSG00000038544	Inip	1110054O05Rik|2610312O17Rik|AA399876|Ssbip1	INTS3 and NABP interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-137952418-4	chr3	137952303	137952503	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011932, intron 3 of 8)	intron (NM_011932, intron 3 of 8)	29146.0	NM_001310753	26377.0	Mm.254835	NM_011932	ENSMUSG00000028159	Dapp1	Bam32	dual adaptor for phosphotyrosine and 3-phosphoinositides 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-34178561-2	chr6	34178461	34178661	+	912.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER5B|DNA|hAT-Charlie	-1507.0	NM_021435	58246.0	Mm.245527	NM_021435	ENSMUSG00000018999	Slc35b4	4930474D06Rik|AB041549|AW494345	solute carrier family 35, member B4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80426521-4	chr7	80426441	80426641	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21105.0	NM_001081454	18550.0	Mm.5241	NM_011046	ENSMUSG00000030530	Furin	9130404I01Rik|Fur|PACE|Pcsk3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-121665583-2	chr8	121665483	121665683	+	552.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13650.0	NM_080855	142682.0	Mm.103202	NM_080855	ENSMUSG00000061410	Zcchc14	AA792890|BDG29	zinc finger, CCHC domain containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-144399975-2	chr3	144399875	144400075	+	578.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	170241.0	NM_011828	23908.0	Mm.12863	NM_011828	ENSMUSG00000040151	Hs2st1	2OST|AW214369|Hs2st|mKIAA0448	heparan sulfate 2-O-sulfotransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-62970514-4	chr9	62970411	62970611	+	979.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019663, intron 1 of 13)	intron (NM_019663, intron 1 of 13)	10368.0	NM_019663	56469.0	Mm.431253	NM_019663	ENSMUSG00000032405	Pias1	2900068C24Rik|Ddxbp1|GBP	protein inhibitor of activated STAT 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5195569-4	chr17	5195481	5195681	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 4 of 19)	intron (NM_001085355, intron 4 of 19)	200507.0	NM_001085355	239985.0	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-93206836-4	chr5	93206731	93206931	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017367)	promoter-TSS (NM_017367)	313.0	NM_029363	75610.0	Mm.175502	NM_029363	ENSMUSG00000029384	2010109A12Rik	-	RIKEN cDNA 2010109A12 gene	protein-coding	-0.797572701399156	-0.788233479680879	-0.615397084439367	-0.630595137579968	-0.796991852759979	-0.78653943497768	-0.217218231853865	-0.793250279869756	1.07298193589693	0.70332405232984	1
Merged-chr13-5864542-7	chr13	5864436	5864636	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011803, intron 1 of 3)	intron (NM_011803, intron 1 of 3)	3047.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-27177761-2	chr7	27177661	27177861	+	574.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029391, intron 1 of 7)	B2_Mm2|SINE|B2	1122.0	NM_029391	19342.0	Mm.482114	NM_029391	ENSMUSG00000053291	Rab4b	1500031G17Rik	RAB4B, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-34965113-2	chr8	34964987	34965187	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_175091, exon 1 of 27)	exon (NM_175091, exon 1 of 27)	603.0	NM_175091	21951.0	Mm.88364	NM_175091	ENSMUSG00000031529	Tnks	4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-57292435-4	chr17	57292331	57292531	+	865.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163816, intron 1 of 25)	B4A|SINE|B4	13331.0	NM_001163815	22324.0	Mm.248172	NM_011691	ENSMUSG00000034116	Vav1	Vav|vav-T	vav 1 oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44846659-2	chr7	44846559	44846759	+	580.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001042655, intron 4 of 16)	intron (NM_001042655, intron 4 of 16)	2420.0	NM_001042655	233204.0	Mm.27567	NM_144924	ENSMUSG00000038520	Tbc1d17	BC017607	TBC1 domain family, member 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31162037-2	chr14	31161937	31162137	+	874.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_138672, intron 7 of 68)	intron (NM_138672, intron 7 of 68)	6604.0	NM_138672	192187.0	Mm.220821	NM_138672	ENSMUSG00000042286	Stab1	FEEL-1|FELE-1|MFEEL-1|MS-1|STAB-1|mKIAA0246	stabilin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-155051203-5	chr1	155051034	155051234	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32130.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-13299361-4	chr10	13299261	13299461	+	962.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195065, intron 1 of 12)	intron (NM_001195065, intron 1 of 12)	24928.0	NM_001195096	215789.0	Mm.283359	NM_001033257	ENSMUSG00000062866	Phactr2	AV158170|BC012871	phosphatase and actin regulator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-12238024-2	chr15	12237924	12238124	+	608.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356498, intron 6 of 15)	intron (NM_001356498, intron 6 of 15)	32996.0	NM_172958	268783.0	Mm.54460	NM_172958	ENSMUSG00000039458	Mtmr12	3Pap|4932703C11|C730015A02Rik|Pip3ap|mKIAA1682	myotubularin related protein 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-88706062-4	chr4	88705954	88706154	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14786.0	NM_008336	15974.0	Mm.377093	NM_008336	ENSMUSG00000100079	Ifnab	-	interferon alpha B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-35839805-2	chr16	35839705	35839905	+	872.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039530, intron 14 of 16)	intron (NM_001039530, intron 14 of 16)	31577.0	NM_001039530	547253.0	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-113431059-4	chr2	113430979	113431179	+	945.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010230, intron 3 of 19)	intron (NM_010230, intron 3 of 19)	-9985.0	NM_001285459	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-133125088-2	chr7	133124988	133125188	+	718.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1605.0	NM_009980	13017.0	Mm.246240	NM_009980	ENSMUSG00000030970	Ctbp2	AA407280|D7Ertd45e|Gtrgeo6|Ribeye	C-terminal binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-100635138-6	chr5	100635014	100635214	+	880.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39142.0	NM_027978	71883.0	Mm.260661	NM_027978	ENSMUSG00000029319	Coq2	2310002F18Rik|PHB:PPT	coenzyme Q2 4-hydroxybenzoate polyprenyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129585795-4	chr2	129585699	129585899	+	963.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7040.0	NM_001291020	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	3.23858037893192	3.21159642028202	3.19514620024625	3.18894216269955	3.12767154090166	2.90119472397053	1.65735300775383	3.4884514042252	-0.420320462220083	0.545662015488879	0.956582826101047
Merged-chr13-97240518-4	chr13	97240441	97240641	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007930)	promoter-TSS (NM_007930)	-564.0	NM_007930	13803.0	Mm.241073	NM_007930	ENSMUSG00000041773	Enc1	Nrpb|PIG10	ectodermal-neural cortex 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55696781-4	chr14	55696706	55696906	+	987.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-14989.0	NM_145705	28113.0	Mm.29346	NM_145705	ENSMUSG00000007589	Tinf2	AW552114|D14Wsu146e|Tin2	Terf1 (TRF1)-interacting nuclear factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-23013277-2	chr2	23013177	23013377	+	636.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077190, intron 1 of 10)	intron (NM_001077190, intron 1 of 10)	26964.0	NM_001077192	11308.0	Mm.205647	NM_007380	ENSMUSG00000058835	Abi1	E3B1|NAP1|Ssh3bp1|abi-1	abl-interactor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-152178800-2	chr4	152178700	152178900	+	983.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_133348, intron 1 of 8)	CpG	700.0	NM_133348	70025.0	Mm.296191	NM_133348	ENSMUSG00000028937	Acot7	2410041A17Rik|Ach1|Act|Bach|CTE-IIa|Cte-II|Lach1	acyl-CoA thioesterase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-79527086-2	chr15	79526986	79527186	+	612.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_152806)	TTS (NM_152806)	5831.0	NM_152806	67040.0	Mm.29644	NM_152806	ENSMUSG00000055065	Ddx17	2610007K22Rik|A430025E01Rik|AI047725|C80929|Gm926|p72	DEAD (Asp-Glu-Ala-Asp) box polypeptide 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-56575595-2	chr3	56575492	56575692	+	839.166626	f0_balb.idr|f1_balb.idr	Intergenic	GSAT_MM|Satellite|Satellite	-391891.0	NM_030595	26422.0	Mm.384353	NM_030595	ENSMUSG00000027799	Nbea	Lyst2|mKIAA1544	neurobeachin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-116986947-2	chr13	116986847	116987047	+	722.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081009, intron 3 of 26)	RSINE1|SINE|B4	38569.0	NM_001081009	52552.0	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	0.473804057011258	1.31421643177076	0.49604151660797	1.09539488552459	0.47589738443555	1.32801055181052	0.498392347370935	0.982109021784921	-0.11729184317138	0.946062884868208	0.998431161219273
Merged-chr11-75661437-2	chr11	75661337	75661537	+	898.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080774, intron 9 of 31)	intron (NM_001080774, intron 9 of 31)	5422.0	NM_001080775	17913.0	Mm.234502	NM_008659	ENSMUSG00000017774	Myo1c	C80397|MMIb|MYO1E|NMI|mm1beta|myr2	myosin IC	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27567908-2	chr17	27567814	27568014	+	685.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-2187.0	NM_001002895	106672.0	Mm.61488	NM_001002895	ENSMUSG00000062753	AI413582	AI854251|Smim29	expressed sequence AI413582	protein-coding	-0.249678541944135	-0.527459478689031	-0.532004553389112	0.397807428064553	-0.54052734329491	-0.526438029999662	-0.531000175271131	-0.534910372674282	-3.63111422630636	0.169799049144372	1
Merged-chr5-4912261-3	chr5	4912150	4912350	+	944.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011074, intron 12 of 14)	intron (NM_011074, intron 12 of 14)	-154034.0	NM_021457	14362.0	Mm.246003	NM_021457	ENSMUSG00000044674	Fzd1	AW227548|FZ-1|Fz1	frizzled class receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-83432866-1	chr15	83432766	83432966	+	724.333313	f0_balb.idr	promoter-TSS (NM_011862)	promoter-TSS (NM_011862)	-16.0	NM_001159510	23970.0	Mm.23978	NM_011862	ENSMUSG00000016664	Pacsin2	AI197433	protein kinase C and casein kinase substrate in neurons 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-51718807-4	chr12	51718704	51718904	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001329698, intron 2 of 5)	intron (NM_001329698, intron 2 of 5)	-26890.0	NM_052973	94186.0	Mm.65979	NM_052973	ENSMUSG00000020954	Strn3	Gs2na|SG2NA	striatin, calmodulin binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65591527-2	chr9	65591427	65591627	+	646.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172453, intron 6 of 11)	intron (NM_172453, intron 6 of 11)	4367.0	NM_001357527	208084.0	Mm.211032	NM_172453	ENSMUSG00000041064	Pif1	4631410M14|AI449441	PIF1 5'-to-3' DNA helicase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-86595406-2	chr6	86595306	86595506	+	811.599976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32768.0	NM_026414	67855.0	Mm.183043	NM_026414	ENSMUSG00000033508	Asprv1	2300003P22Rik|AA986851|SASP|SASPase|Taps	aspartic peptidase, retroviral-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-34154793-8	chr8	34154701	34154901	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026432, exon 1 of 6)	exon (NM_026432, exon 1 of 6)	238.0	NM_026432	67887.0	Mm.290353	NM_026432	ENSMUSG00000031532	Saraf	1810045K07Rik|Tmem66	store-operated calcium entry-associated regulatory factor	protein-coding	4.37441036692853	4.32674665886273	3.43622629660751	4.18676719828429	3.90924751491744	2.92567737798191	4.43128040815538	4.39899250852784	-0.11971317706779	0.80957945082273	0.998431161219273
Merged-chr7-81573630-1	chr7	81573530	81573730	+	603.5	f0_balb.idr	intron (NM_001004185, intron 1 of 9)	intron (NM_001004185, intron 1 of 9)	2338.0	NM_001004185	434204.0	Mm.181641	NM_001004185	ENSMUSG00000045795	Whamm	BB081391|Whdc1|mKIAA1971	WAS protein homolog associated with actin, golgi membranes and microtubules	protein-coding	1.01063817695132	1.3489080086825	2.06531248571356	1.62763955809323	1.40462656914946	1.57187627901296	2.59632691903188	2.11413493685528	1.21850458663081	0.274511913675611	0.778541872770812
Merged-chr1-120093719-4	chr1	120093621	120093821	+	980.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19941.0	NM_019432	170706.0	Mm.24750	NM_019432	ENSMUSG00000050777	Tmem37	AI173373|AW540203|Pr|Pr1	transmembrane protein 37	protein-coding	4.0469116780668	4.50593356874458	4.67861952667415	4.43835412476577	4.38454251485287	3.88292932399555	2.82098188659219	3.63518956156127	-0.840593505109628	0.0773585391387526	0.423296329851058
Merged-chr12-116625829-2	chr12	116625735	116625935	+	578.25	f0_balb.idr|f1_c57bl6.idr	intron (NM_011215, intron 2 of 22)	intron (NM_011215, intron 2 of 22)	140115.0	NM_011215	19276.0	Mm.206054	NM_011215	ENSMUSG00000056553	Ptprn2	4930425H11Rik|IA2beta|PTP-NP|Phol|mKIAA0387|phogrin	protein tyrosine phosphatase, receptor type, N polypeptide 2	protein-coding	1.68997800459574	2.54086293795393	1.09198819944701	1.56229601280795	1.01555359511742	1.69852980848416	0.845789713922086	0.826461640313896	-2.20013056409554	0.0863685392605778	0.451721767239936
Merged-chr2-172435458-2	chr2	172435358	172435558	+	789.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5120.0	NM_025542	66404.0	Mm.25157	NM_025542	ENSMUSG00000027502	Rtf2	1700067C04Rik|2410001C21Rik|5730427M17Rik|AA589417|Rtfdc1	replication termination factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-62304391-2	chr4	62304291	62304491	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001045528, exon 26 of 28)	exon (NM_001045528, exon 26 of 28)	12844.0	NM_001290518	20530.0	Mm.292539	NM_025286	ENSMUSG00000066152	Slc31a2	AI604396|CTR2	solute carrier family 31, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106105989-2	chr11	106105889	106106089	+	555.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011947, intron 2 of 15)	(GGGGA)n|Simple_repeat|Simple_repeat	21087.0	NM_011947	26406.0	Mm.27041	NM_011947	ENSMUSG00000020700	Map3k3	AW548911|MAPKKK3|Mekk3|mKIAA4031	mitogen-activated protein kinase kinase kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-118049520-3	chr10	118049423	118049623	+	882.7333369999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-92264.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	3.06304213596067	3.50093055716443	3.08232015825298	3.29404511873651	2.94375010997686	1.59022359018418	2.56010333511978	1.98420478015971	-1.58053523695473	0.0333863033154562	0.256227420370263
Merged-chr2-38944193-3	chr2	38944093	38944293	+	739.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172854, intron 2 of 7)	RLTR17|LTR|ERVK	12213.0	NM_172854	241327.0	Mm.103491	NM_172854	ENSMUSG00000046618	Olfml2a	4932431K08Rik|mFLJ00237	olfactomedin-like 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-68778105-3	chr11	68778052	68778252	+	699.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175260, intron 15 of 40)	intron (NM_175260, intron 15 of 40)	74979.0	NM_023668	83431.0	Mm.31979	NM_023668	ENSMUSG00000018736	Ndel1	2600006O07Rik|MITAP1|NUDEL|mNudel	nudE neurodevelopment protein 1 like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-35406270-4	chr12	35406174	35406374	+	941.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	128715.0	NM_013464	11622.0	Mm.341377	NM_013464	ENSMUSG00000019256	Ahr	Ah|Ahh|Ahre|In|bHLHe76	aryl-hydrocarbon receptor	protein-coding	2.43465810676325	1.29025053523377	1.00133325341052	2.05471052972818	2.12486790368069	1.0308822906688	1.00675150288501	2.1595089957432	-0.321051389400547	0.802346111236369	0.998431161219273
Merged-chr7-81343222-2	chr7	81343122	81343322	+	839.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009092, intron 4 of 4)	intron (NM_009092, intron 4 of 4)	2012.0	NM_009092	20068.0	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-11104999-2	chr8	11104899	11105099	+	700.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-96569.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-9756403-2	chr13	9756303	9756503	+	854.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347474, intron 1 of 14)	B1_Mm|SINE|Alu	7407.0	NM_001347471	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-80614857-4	chr1	80614758	80614958	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175291, intron 4 of 55)	intron (NM_175291, intron 4 of 55)	50494.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-20643312-4	chr9	20643235	20643435	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013911)	promoter-TSS (NM_013911)	-1.0	NM_025401	66177.0	Mm.390165	NM_025401	ENSMUSG00000084786	Ubl5	1110030M22Rik|beacon	ubiquitin-like 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-108637874-6	chr12	108637737	108637937	+	895.544434	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163396, intron 2 of 14)	intron (NM_001163396, intron 2 of 14)	2084.0	NM_001163396	14026.0	Mm.238841	NM_007965	ENSMUSG00000021262	Evl	AI528774|b2b2600Clo	Ena-vasodilator stimulated phosphoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-42398078-2	chr6	42397978	42398178	+	734.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-2160.0	NM_001001452	387514.0	Mm.377921	NM_001001452	ENSMUSG00000046652	Tas2r143	Gm1404|Tas2r43|mt2r36	taste receptor, type 2, member 143	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-50591027-4	chr9	50590921	50591121	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12828.0	NM_025848	66925.0	Mm.10406	NM_025848	ENSMUSG00000000171	Sdhd	3110001M13Rik|AVLL5809|C78570|PRO19626	succinate dehydrogenase complex, subunit D, integral membrane protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-62173473-3	chr18	62173404	62173604	+	905.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6477.0	NM_007420	11555.0	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-37778110-3	chr19	37778017	37778217	+	874.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	80309.0	NM_007811	13082.0	Mm.42230	NM_007811	ENSMUSG00000024987	Cyp26a1	Cyp26|P450RA|P450RAI|RAH	cytochrome P450, family 26, subfamily a, polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-128840169-2	chr6	128840069	128840269	+	665.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13854.0	NM_030599	80782.0	Mm.6180	NM_030599	ENSMUSG00000079298	Klrb1b	Klrb1d|Ly55b|Ly55d|NKR-P1B|NKR-P1D|Nkrp1-b|Nkrp1b|Nkrp1d|ly-55b|ly-55d	killer cell lectin-like receptor subfamily B member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-62354579-4	chr14	62354482	62354682	+	953.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026001, intron 5 of 10)	L1M2|LINE|L1	22514.0	NM_026001	67153.0	Mm.26040	NM_026001	ENSMUSG00000021932	Rnaseh2b	1110019N06Rik|2610207P08Rik|Dleu8	ribonuclease H2, subunit B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-12475480-4	chr13	12475319	12475519	+	859.535706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_133643, exon 6 of 6)	3' UTR (NM_133643, exon 6 of 6)	-13681.0	NM_001291057	56048.0	Mm.474138	NM_018886	ENSMUSG00000057554	Lgals8	1200015E08Rik|AI326142|D13Ertd524e|Lgals-8	lectin, galactose binding, soluble 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-23883524-2	chr18	23883424	23883624	+	772.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162941, intron 6 of 7)	intron (NM_001162941, intron 6 of 7)	-71164.0	NM_027007	69256.0	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-94597936-2	chr15	94597836	94598036	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8112.0	NM_008971	19230.0	Mm.490250	NM_008971	ENSMUSG00000022451	Twf1	A6|Ptk9|twinfilin	twinfilin actin binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-33347269-4	chr4	33347177	33347377	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305273, intron 8 of 15)	intron (NM_001305273, intron 8 of 15)	36966.0	NM_001305273	24018.0	Mm.240024	NM_011884	ENSMUSG00000028274	Rngtt	AU020997|HCE|MCE1	RNA guanylyltransferase and 5'-phosphatase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-120812621-4	chr5	120812534	120812734	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_003507)	promoter-TSS (NR_003507)	-1.0	NR_003507	23961.0	Mm.233471	NM_001083925	ENSMUSG00000029605	Oas1b	Flv|L1|Mmu-L1|Oas1|Oias-2|Oias2|Wnv	2'-5' oligoadenylate synthetase 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-76933503-4	chr18	76933391	76933591	+	999.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025409, intron 1 of 2)	LTR10_RN|LTR|ERVK	3464.0	NM_025409	66191.0	Mm.28593	NM_025409	ENSMUSG00000090000	Ier3ip1	1110057H19Rik|AI644142|AL022842|AL022863|AV026606	immediate early response 3 interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-45279640-4	chr2	45279568	45279768	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-162226.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-62851126-2	chr16	62851026	62851226	+	684.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5b|LINE|L1	-3181.0	NM_011173	19128.0	Mm.127156	NM_011173	ENSMUSG00000022912	Pros1	AW214361	protein S (alpha)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-134101828-2	chr1	134101728	134101928	+	864.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9414.0	NM_001284525	71884.0	Mm.328268	NM_027979	ENSMUSG00000026450	Chit1	2300002L19Rik	chitinase 1 (chitotriosidase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-34207199-2	chr19	34207099	34207299	+	615.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360718, intron 1 of 10)	intron (NM_001360718, intron 1 of 10)	-10309.0	NM_001360719	76630.0	Mm.130952	NM_029682	ENSMUSG00000024776	Stambpl1	1700095N21Rik|8230401J17Rik|ALMalpha|AMSH-FP	STAM binding protein like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-26469291-4	chr12	26469212	26469412	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020557)	promoter-TSS (NM_020557)	97.0	NM_020557	22169.0	Mm.271839	NM_020557	ENSMUSG00000020638	Cmpk2	1200004E04Rik|TDKI|Tyki	cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial	protein-coding	-0.765305490304523	-1.00261568135389	-1.01376651116566	-1.01695382562211	-1.0195925996611	-0.824745790663696	-1.01124220771551	-0.720837461987378	0.789125678728339	0.793121846737563	1
Merged-chr2-58130238-3	chr2	58130141	58130341	+	942.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_139200, exon 8 of 8)	3' UTR (NM_139200, exon 8 of 8)	29881.0	NM_139200	227929.0	Mm.273905	NM_139200	ENSMUSG00000026832	Cytip	A130053M09Rik|AI462064|C80816|Cbp|Cybr|Pscdbp	cytohesin 1 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-124998022-2	chr4	124997922	124998122	+	552.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_138683, intron 2 of 5)	intron (NM_138683, intron 2 of 5)	11592.0	NM_138683	192199.0	Mm.42202	NM_138683	ENSMUSG00000028871	Rspo1	R-spondin|Rspondin	R-spondin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-99235375-2	chr4	99235277	99235477	+	622.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175029, intron 10 of 10)	intron (NM_175029, intron 10 of 10)	41230.0	NM_001145967	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	2.98342364406992	1.71999734790294	2.93541728609208	3.51740036861149	3.30656939935094	3.6920525792228	3.42861850111463	3.16212156269045	0.76421429441953	0.253136407632951	0.750819051763885
Merged-chr8-71751537-1	chr8	71751437	71751637	+	875.0	f1_balb.idr	Intergenic	Intergenic	-25856.0	NM_028715	74015.0	Mm.22025	NM_028715	ENSMUSG00000070000	Fcho1	3322402E17Rik|N28152	FCH domain only 1	protein-coding	-1.31349849087795	-1.28274354783242	-1.29349452597086	-1.3023256995151	-1.3130151546297	-1.28041376602105	-0.694015972326031	-1.30074492367298	2.57396649482007	0.456321314346772	1
Merged-chr17-5489285-2	chr17	5489185	5489385	+	944.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3315.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-89070219-4	chr1	89070109	89070309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133816)	promoter-TSS (NM_133816)	-206.0	NM_133816	98402.0	Mm.170983	NM_133816	ENSMUSG00000036206	Sh3bp4	AI594717|AW227605|BOG25	SH3-domain binding protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-69611625-4	chr13	69611526	69611726	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145354)	promoter-TSS (NM_145354)	-163.0	NM_175283	78925.0	Mm.451912	NM_175283	ENSMUSG00000021594	Srd5a1	0610031P22Rik|4930435F02Rik|S5AR 1|Srd5a-1	steroid 5 alpha-reductase 1	protein-coding	7.07886084503326	6.84447075245555	7.74974988374872	7.30813268727851	7.28634733475548	7.01371195008303	7.71745893386856	7.08430702389339	0.0183700416790438	0.929646481037152	0.998431161219273
Merged-chr15-20787823-2	chr15	20787723	20787923	+	582.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	-121073.0	NM_022816	64833.0	Mm.352763	NM_022816	ENSMUSG00000047565	Acot10	Acate3|MT-ACT48|p48	acyl-CoA thioesterase 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-100227776-4	chr15	100227684	100227884	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007497)	promoter-TSS (NM_007497)	-75.0	NM_007497	11908.0	Mm.676	NM_007497	ENSMUSG00000023027	Atf1	-	activating transcription factor 1	protein-coding	4.45729681566943	4.67460740701861	3.72969092718203	4.89916677964454	4.64245093785437	4.93761190759758	3.45528549557717	5.27686968000795	0.277896494905224	0.537817169981061	0.953963493057627
Merged-chr7-19118400-3	chr7	19118310	19118510	+	971.944458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1449.0	NM_175530	243867.0	Mm.230830	NM_175530	ENSMUSG00000050428	Fbxo46	20D7-FC4|4932704E22Rik|Fbxo34l	F-box protein 46	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-61558449-3	chr8	61558347	61558547	+	874.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293772, intron 10 of 21)	intron (NM_001293772, intron 10 of 21)	32722.0	NM_001293774	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-119001425-2	chr8	119001325	119001525	+	658.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019707, intron 6 of 13)	PB1D10|SINE|Alu	-343113.0	NM_024219	68196.0	Mm.358714	NM_024219	ENSMUSG00000031839	Hsbp1	0610007A03Rik|AA408769|Hsp25	heat shock factor binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35235100-4	chr17	35235006	35235206	+	978.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347351)	promoter-TSS (NM_001347351)	96.0	NM_001347351	66237.0	Mm.396107	NM_023179	ENSMUSG00000024403	Atp6v1g2	1500002D01Rik|Atp6g2|NG38|VAG2	ATPase, H+ transporting, lysosomal V1 subunit G2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-100561460-2	chr5	100561360	100561560	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_139198, intron 2 of 4)	intron (NM_139198, intron 2 of 4)	10745.0	NM_139198	231507.0	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-101540115-4	chr13	101540001	101540201	+	898.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-142521.0	NR_046187	78136.0	Mm.399065	NR_046187		4922502H24Rik	-	RIKEN cDNA 4922502H24 gene	ncRNA	2.00687192487729	2.2475217307875	2.95111763956318	2.55525057066937	2.52878869115767	1.43155732386005	2.44332584406228	2.12329467398184	-0.635669562151946	0.472585901415958	0.926125823511231
Merged-chr13-60698193-3	chr13	60698092	60698292	+	917.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 3 of 26)	L1M5|LINE|L1	88172.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	0.916775971344788	0.43470735575506	0.426056769182208	0.746510559194936	1.39146593571636	0.647297409273367	0.783857476408546	0.420512787787223	1.15658619953043	0.49567400289447	1
Merged-chr11-74841275-2	chr11	74841175	74841375	+	851.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010813, intron 4 of 5)	intron (NM_010813, intron 4 of 5)	10351.0	NM_010813	17428.0	Mm.3759	NM_010813	ENSMUSG00000000282	Mnt	Rox|bHLHd3	max binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-79216490-2	chr11	79216390	79216590	+	602.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26534.0	NM_001042565	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-50816721-3	chr15	50816618	50816818	+	653.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310485, intron 5 of 7)	intron (NM_001310485, intron 5 of 7)	72331.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-65929984-4	chr3	65929880	65930080	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28269.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	3.70505371257655	4.19352438324154	4.00276794486198	4.25929729564634	3.31571853608349	3.42322506014988	3.59724498075647	3.71927471427579	-0.768336809228734	0.106811654346468	0.510672935283105
Merged-chr17-46890582-4	chr17	46890456	46890656	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178385)	promoter-TSS (NM_178385)	-65.0	NM_178385	72726.0	Mm.33780	NM_178385	ENSMUSG00000036430	Tbcc	2810055C19Rik	tubulin-specific chaperone C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-116198108-4	chr6	116198000	116198200	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4726.0	NM_177412	330401.0	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-57535647-4	chr6	57535550	57535750	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175523)	promoter-TSS (NM_175523)	-224.0	NM_175523	243382.0	Mm.396893	NM_175523	ENSMUSG00000037826	Ppm1k	2900063A19Rik|A930026L03Rik|PP2Cm	protein phosphatase 1K (PP2C domain containing)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-118663466-2	chr2	118663339	118663539	+	650.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033254)	promoter-TSS (NM_001033254)	-138.0	NM_001033254	214230.0	Mm.241857	NM_001033254	ENSMUSG00000074923	Pak6	4732456M09	p21 (RAC1) activated kinase 6	protein-coding	0.594474505980898	1.10225897011167	0.176758855157881	0.170102059102801	0.160578971029526	1.01013854805572	0.178649831075624	0.171269775371711	-0.666340199403551	0.74416353706487	1
Merged-chr17-79969269-2	chr17	79969169	79969369	+	551.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73146.0	NM_001286647	56298.0	Mm.175403	NM_019717	ENSMUSG00000059811	Atl2	2010110I21Rik|AA407293|AV334690|Aip-2|Arl6ip2	atlastin GTPase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-180104584-4	chr2	180104477	180104677	+	979.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133849)	promoter-TSS (NM_133849)	-170.0	NM_133849	99296.0	Mm.285360	NM_133849	ENSMUSG00000039059	Hrh3	AW049250|H3R|HH3R	histamine receptor H3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-189877862-1	chr1	189877762	189877962	+	658.0	f1_balb.idr	Intergenic	B3A|SINE|B2	44429.0	NM_026796	226830.0	Mm.156895	NM_026796	ENSMUSG00000026603	Smyd2	1110020E07Rik|4930402C15|KMT3C|Zmynd14	SET and MYND domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-10319811-4	chr17	10319693	10319893	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159517)	promoter-TSS (NM_001159517)	-126.0	NR_037588	100526796.0	Mm.384135	NR_037588		Cahm	B930003M22Rik	colon adenocarcinoma hypermethylated RNA	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-49066506-4	chr14	49066401	49066601	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144535)	promoter-TSS (NM_144535)	-48.0	NM_001360070	74385.0	Mm.379235	NM_144535	ENSMUSG00000036291	Ap5m1	4932432K03Rik|Mu5|Mudeng	adaptor-related protein complex 5, mu 1 subunit	protein-coding	5.29446570867745	5.61315135071253	5.19278791303182	5.28920609722707	5.84445301137909	5.11085480266711	6.39907706461127	5.78938914923149	0.575267850493628	0.054869945640103	0.344761543070179
Merged-chr6-39539923-3	chr6	39539751	39539951	+	870.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172477, intron 1 of 18)	intron (NM_172477, intron 1 of 18)	17983.0	NM_172477	209773.0	Mm.440021	NM_172477	ENSMUSG00000038456	Dennd2a	B930096L08Rik|C130031G22|mKIAA1277	DENN/MADD domain containing 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41402240-4	chr19	41402158	41402358	+	917.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17188.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-61151851-3	chr19	61151744	61151944	+	687.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11004.0	NR_131954	414758.0	Mm.100056	NM_001001737	ENSMUSG00000074733	Zfp950	5830428H23Rik|AU016073|BC055757|Gm34518|Zfp826|mszf84	zinc finger protein 950	protein-coding	3.57219229637687	3.21525496694005	2.65829833027021	2.92645773145835	2.46734067317025	3.13788687100243	3.52883124336683	2.59558312678538	-0.248362848394495	0.708540559865818	0.998431161219273
Merged-chr17-7917403-4	chr17	7917284	7917484	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8616.0	NM_145968	72536.0	Mm.119680	NM_145968	ENSMUSG00000033450	Tagap	2610315E15Rik|TRD|Tcd-1|Tcd1|Tcd1a|tcs-1|tcs1	T cell activation Rho GTPase activating protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135909683-4	chr5	135909587	135909787	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_018871, exon 2 of 2)	3' UTR (NM_018871, exon 2 of 2)	21768.0	NM_013560	15507.0	Mm.13849	NM_013560	ENSMUSG00000004951	Hspb1	27kDa|Hsp25	heat shock protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-23180225-4	chr10	23180123	23180323	+	882.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010167, intron 3 of 18)	intron (NM_010167, intron 3 of 18)	169667.0	NM_001347372	14051.0	Mm.332128	NM_010167	ENSMUSG00000010461	Eya4	B130023L16Rik	EYA transcriptional coactivator and phosphatase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-39754123-2	chr14	39754023	39754223	+	758.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	98460.0	NR_045936	73591.0	Mm.65499	NR_045936	ENSMUSG00000101261	1700109I08Rik	-	RIKEN cDNA 1700109I08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-116006875-4	chr3	116006776	116006976	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163515)	promoter-TSS (NM_001163515)	530.0	NM_023214	66500.0	Mm.34550	NM_023214	ENSMUSG00000054414	Slc30a7	1810059J10Rik|2610034N15Rik|4833428C12Rik|AI467242|ZnT-7|ZnT7|Zntl2	solute carrier family 30 (zinc transporter), member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-52300155-2	chr3	52300055	52300255	+	799.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_019739, intron 1 of 2)	intron (NM_019739, intron 1 of 2)	31818.0	NM_019739	56458.0	Mm.29891	NM_019739	ENSMUSG00000044167	Foxo1	AI876417|Afxh|FKHR|Fkhr1|Foxo1a	forkhead box O1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-38477517-2	chr5	38477417	38477617	+	653.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_145559, intron 2 of 10)	intron (NM_145559, intron 2 of 10)	2789.0	NM_001102414	117591.0	Mm.260137	NM_145559	ENSMUSG00000005107	Slc2a9	Glut9|SLC2A9B|SLC2a9A	solute carrier family 2 (facilitated glucose transporter), member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-70378209-4	chr4	70378098	70378298	+	895.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145990, intron 4 of 36)	GSAT_MM|Satellite|Satellite	32237.0	NM_001313762	214444.0	Mm.370777	NM_145990	ENSMUSG00000039298	Cdk5rap2	2900018K03Rik|an|mKIAA1633	CDK5 regulatory subunit associated protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-95687324-2	chr11	95687224	95687424	+	798.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20367.0	NM_008831	18673.0	Mm.263862	NM_008831	ENSMUSG00000038845	Phb	Bap32	prohibitin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-55389827-4	chr18	55389722	55389922	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-397231.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128300813-1	chr10	128300713	128300913	+	557.0	f1_balb.idr	Intergenic	B2_Mm2|SINE|B2	-2522.0	NM_133992	103135.0	Mm.244183	NM_133992	ENSMUSG00000005682	Pan2	1200014O24Rik|AI047843|AW742773|Usp52|mKIAA0710	PAN2 poly(A) specific ribonuclease subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-130795793-2	chr3	130795693	130795893	+	568.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR23|LTR|ERV1	-65395.0	NM_001005859	68436.0	Mm.140568	NM_026724	ENSMUSG00000062006	Rpl34	1100001I22Rik	ribosomal protein L34	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-27708015-2	chr15	27707915	27708115	+	818.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26473.0	NM_001242423	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-103034270-4	chr14	103034187	103034387	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045657)	promoter-TSS (NR_045657)	-484.0	NR_045657	71264.0	Mm.399572	NR_045657	ENSMUSG00000114980	4933432I03Rik	-	RIKEN cDNA 4933432I03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-56598838-2	chr14	56598738	56598938	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145978, intron 12 of 34)	intron (NM_001145978, intron 12 of 34)	21675.0	NR_153784	102635191.0		NR_153784		Gm16573	-	predicted gene 16573	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-54685676-2	chr14	54685574	54685774	+	826.916626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021437)	promoter-TSS (NM_021437)	-497.0	NM_021437	58248.0	Mm.197509	NM_021437	ENSMUSG00000040822	1700123O20Rik	MNCb-2990	RIKEN cDNA 1700123O20 gene	protein-coding	1.78575458970264	2.83736541871897	1.82200439842876	1.24602686296414	0.967181469139865	1.55922078572387	2.20249880638624	1.25220621839075	-1.24397134844157	0.272326344728122	0.775631299106725
Merged-chr3-88832581-3	chr3	88832488	88832688	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015498)	promoter-TSS (NR_015498)	-101.0	NR_015498	319830.0	Mm.400394	NR_015498		1500004A13Rik	5430404N14Rik|BB132176	RIKEN cDNA 1500004A13 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16307515-3	chr7	16307377	16307577	+	820.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-2106.0	NM_133234	170770.0	Mm.7660	NM_133234	ENSMUSG00000002083	Bbc3	PUMA|PUMA/JFY1	BCL2 binding component 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-36530536-4	chr5	36530394	36530594	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001113364, exon 1 of 12)	5' UTR (NM_001113364, exon 1 of 12)	129.0	NM_001113364	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45643739-4	chr7	45643643	45643843	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172418, intron 7 of 9)	intron (NM_172418, intron 7 of 9)	3766.0	NM_172418	74490.0	Mm.107442	NM_172418	ENSMUSG00000042918	Mamstr	2810022D01Rik|5430432N15Rik|AW743872|Mastr	MEF2 activating motif and SAP domain containing transcriptional regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19830928-4	chr7	19830840	19831040	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8185.0	NM_033601	12051.0	Mm.439658	NM_033601	ENSMUSG00000053175	Bcl3	AI528691|Bcl-3	B cell leukemia/lymphoma 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-38248051-3	chr15	38247982	38248182	+	857.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28879.0	NM_008757	18285.0	Mm.252830	NM_008757	ENSMUSG00000061923	Odf1	-	outer dense fiber of sperm tails 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-122251915-4	chr7	122251826	122252026	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32430.0	NM_027363	70261.0	Mm.96997	NM_027363	ENSMUSG00000030865	Chp2	2010110P09Rik|Cbhp2	calcineurin-like EF hand protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35841446-4	chr17	35841309	35841509	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001010833)	promoter-TSS (NM_001010833)	-89.0	NM_001010833	240087.0	Mm.218511	NM_001010833	ENSMUSG00000061607	Mdc1	6820401C03|AA413496|Nfbd1|mKIAA0170	mediator of DNA damage checkpoint 1	protein-coding	6.39077173788213	6.71838817203743	6.39474867724952	6.65736855120947	6.39365871586604	6.48411435012208	7.09018634100341	6.09023815286025	0.0155493127432588	0.946039892027307	0.998431161219273
Merged-chr11-50179093-2	chr11	50178993	50179193	+	597.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026543, intron 2 of 6)	B1_Mus2|SINE|Alu	4242.0	NM_026543	68067.0	Mm.40828	NM_026543	ENSMUSG00000020381	Mrnip	2900016G09Rik|3010026O09Rik|AI851514|AW475975	MRN complex interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-53461836-2	chr3	53461736	53461936	+	666.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172501, intron 2 of 6)	intron (NM_172501, intron 2 of 6)	1422.0	NM_172501	212114.0	Mm.85744	NM_172501	ENSMUSG00000042997	Nhlrc3	4833441N19|8030451K01Rik|mKIAA4083	NHL repeat containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-144016384-2	chr2	144016284	144016484	+	603.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5121.0	NM_024281	81910.0	Mm.13705	NM_024281	ENSMUSG00000027422	Rrbp1	1700087N07Rik|5730465C04Rik|ES/130|mKIAA1398|mRRp0|mRRp1.8|mRRp10|mRRp15a|mRRp15b|mRRp16.8|mRRp2|mRRp41|mRRp47|mRRp5.4|p180	ribosome binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126946570-2	chr8	126946470	126946670	+	631.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024214)	promoter-TSS (NM_024214)	-649.0	NM_024214	67952.0	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-46933420-3	chr9	46933317	46933517	+	655.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19814.0	NR_015605	73040.0	Mm.265384	NR_015605	ENSMUSG00000099696	2900052N01Rik	AU067665	RIKEN cDNA 2900052N01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-76222917-2	chr16	76222817	76223017	+	742.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	100304.0	NR_040575	78215.0	Mm.243885	NR_040575		4930578N18Rik	-	RIKEN cDNA 4930578N18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-73951154-4	chr17	73951036	73951236	+	920.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011723)	promoter-TSS (NM_011723)	-940.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-60527102-4	chr3	60527004	60527204	+	977.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253711, intron 1 of 7)	MIRc|SINE|MIR	25925.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	1.27401848445914	1.280572698515	1.50008839478278	1.20915862800703	1.48694980720584	1.56860985808111	1.24949570392078	0.879737304144271	0.0322711666211265	0.979383830565884	0.998431161219273
Merged-chr2-32966905-4	chr2	32966784	32966984	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	3583.0	NR_002898	104367.0	Mm.250030	NR_002898	ENSMUSG00000065124	Snora65	MBII-351|Rnu65	small nucleolar RNA, H/ACA box 65	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43058898-4	chr4	43058793	43058993	+	974.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310758)	promoter-TSS (NM_001310758)	-60.0	NM_021468	22249.0	Mm.128892	NM_021468	ENSMUSG00000028456	Unc13b	Munc13-1|Munc13-2|Unc13a|Unc13h1|Unc13h2	unc-13 homolog B (C. elegans)	protein-coding	3.40585138655822	1.65633644221648	2.72548060427707	2.95871755887659	3.2030518487609	2.70890256038136	3.15727416449487	3.1434713869331	0.395617169937605	0.58728449267224	0.967978662388709
Merged-chr12-5375210-2	chr12	5375110	5375310	+	831.5	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001164493, exon 1 of 14)	5' UTR (NM_001164493, exon 1 of 14)	472.0	NM_001164493	208439.0	Mm.388281	NM_001164493	ENSMUSG00000020627	Klhl29	A230106N14Rik|Gm68|Kbtbd9|mKIAA1921	kelch-like 29	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3323321-4	chr19	3323220	3323420	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013495)	promoter-TSS (NM_013495)	19.0	NM_013495	12894.0	Mm.18522	NM_013495	ENSMUSG00000024900	Cpt1a	C730027G07|CPTI|Cpt1	carnitine palmitoyltransferase 1a, liver	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-6774854-4	chr18	6774733	6774933	+	983.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181070, intron 2 of 6)	intron (NM_181070, intron 2 of 6)	9666.0	NM_001278447	19330.0	Mm.132802	NM_181070	ENSMUSG00000073639	Rab18	AA959686	RAB18, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-52725358-4	chr17	52725262	52725462	+	952.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001031811, intron 1 of 15)	intron (NM_001031811, intron 1 of 15)	122653.0	NM_001031811	211468.0	Mm.399068	NM_001031811	ENSMUSG00000035580	Kcnh8	C130090D05Rik|ELK|ELK1|ELK3|Kv12.1	potassium voltage-gated channel, subfamily H (eag-related), member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-84482040-4	chr2	84481936	84482136	+	971.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR18B_MM|LTR|ERVK	-5261.0	NM_001177320	21788.0	Mm.124316	NM_011576	ENSMUSG00000027082	Tfpi	A630013F22Rik|AW552122|EPI|LACI	tissue factor pathway inhibitor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-156866156-2	chr2	156866056	156866256	+	882.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026124, intron 2 of 3)	intron (NM_026124, intron 2 of 3)	3034.0	NM_026124	67388.0	Mm.29264	NM_026124	ENSMUSG00000027637	1110008F13Rik	AI316789	RIKEN cDNA 1110008F13 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-45049346-2	chr14	45049246	45049446	+	698.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61235.0	NM_008964	19217.0	Mm.4630	NM_008964	ENSMUSG00000037759	Ptger2	EP2|Ptgerep2	prostaglandin E receptor 2 (subtype EP2)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-113622031-2	chr5	113621931	113622131	+	604.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008153, intron 1 of 2)	B2_Mm1t|SINE|B2	21572.0	NM_001359060	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19772122-1	chr7	19772022	19772222	+	569.0	f1_c57bl6.idr	Intergenic	Intergenic	-1590.0	NM_020486	57278.0	Mm.29236	NM_020486	ENSMUSG00000002980	Bcam	1200005K12Rik|B-CAM|Gplu|Lu	basal cell adhesion molecule	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171408894-2	chr1	171408825	171409025	+	968.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001005508, exon 12 of 12)	exon (NM_001005508, exon 12 of 12)	-2388.0	NM_001305678	22278.0	Mm.8	NM_009480	ENSMUSG00000026641	Usf1	bHLHb11	upstream transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-55240205-2	chr11	55240105	55240305	+	667.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35865.0	NM_153139	215335.0	Mm.35732	NM_153139	ENSMUSG00000020261	Slc36a1	5830411H19Rik|AI839897|Pat1	solute carrier family 36 (proton/amino acid symporter), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-190911096-3	chr1	190911017	190911217	+	974.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178775, intron 1 of 14)	intron (NM_178775, intron 1 of 14)	653.0	NM_178775	320119.0	Mm.220912	NM_178775	ENSMUSG00000089872	Rps6kc1	AA682037|B130003F20Rik|C80612|Rpk118	ribosomal protein S6 kinase polypeptide 1	protein-coding	4.08653946689967	2.90605036812792	1.99619393539437	2.8439630561032	4.90640851237662	3.44378237235096	3.68420986225174	4.35273321210209	1.4661615704046	0.0206936752708322	0.183189411632645
Merged-chr5-147430193-4	chr5	147430162	147430362	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001359433, exon 1 of 20)	5' UTR (NM_001359433, exon 1 of 20)	106.0	NM_028291	72587.0	Mm.320469	NM_028291	ENSMUSG00000029647	Pan3	2700050F09Rik|A430027N15Rik|AU014670	PAN3 poly(A) specific ribonuclease subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-60710902-3	chr18	60710818	60711018	+	957.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001348100, intron 2 of 14)	intron (NM_001348100, intron 2 of 14)	16648.0	NM_001348103	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-40020726-1	chr15	40020626	40020826	+	906.0	f0_balb.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-24462.0	NR_155348	102636079.0	Mm.421381	NR_155348	ENSMUSG00000115142	Gm33251	-	predicted gene, 33251	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-154677200-4	chr2	154677118	154677318	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029362, intron 1 of 4)	intron (NM_029362, intron 1 of 4)	20192.0	NM_029362	75608.0	Mm.262480	NM_029362	ENSMUSG00000038467	Chmp4b	2010012F05Rik|C76846|Snf7-2	charged multivesicular body protein 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-33630323-2	chr17	33630223	33630423	+	569.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_034153, intron 3 of 6)	intron (NR_034153, intron 3 of 6)	1231.0	NM_026712	328801.0	Mm.181488	NM_026712	ENSMUSG00000073423	Zfp414	0610030H11Rik|Znf414	zinc finger protein 414	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-75773465-4	chr10	75773339	75773539	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010027)	promoter-TSS (NM_010027)	-65.0	NM_010027	13202.0	Mm.298947	NM_010027	ENSMUSG00000001666	Ddt	C78655	D-dopachrome tautomerase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-58802665-4	chr2	58802585	58802785	+	975.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47501.0	NM_029692	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-87709512-2	chr16	87709412	87709612	+	575.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007520, intron 1 of 4)	intron (NM_007520, intron 1 of 4)	10558.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-17775690-2	chr10	17775590	17775790	+	916.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20529.0	NM_138628	378431.0	Mm.283493	NM_138628	ENSMUSG00000039891	Txlnb	2310001N14Rik|Mdp77	taxilin beta	protein-coding	0.172022635607638	-0.153204802273586	0.137058230628648	-0.159999228427306	0.179828366469785	-0.152333873602806	0.14381085034121	-0.159485412425873	0.0413177756925278	0.985342445244657	1
Merged-chr2-59616112-4	chr2	59616031	59616231	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198294, intron 1 of 26)	intron (NM_198294, intron 1 of 26)	4089.0	NM_198294	66860.0	Mm.27917	NM_198294	ENSMUSG00000035168	Tanc1	1200003E16Rik|Tanc|mKIAA1728	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35825295-4	chr17	35825207	35825407	+	875.4583130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008027, intron 6 of 12)	intron (NM_008027, intron 6 of 12)	1950.0	NM_008027	14251.0	Mm.2931	NM_008027	ENSMUSG00000059714	Flot1	reggie-2	flotillin 1	protein-coding	1.28290631907135	1.92603237860761	2.37047059332823	1.80672356594905	1.09050562768414	1.9406467740026	1.99965337004288	1.81611287730922	-0.41890647854208	0.700597510167927	0.998431161219273
Merged-chr11-68871952-4	chr11	68871864	68872064	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16589.0	NM_177060	320040.0	Mm.305696	NM_177060	ENSMUSG00000046490	Rnf222	9930039A11Rik	ring finger protein 222	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-107967440-2	chr5	107967340	107967540	+	920.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026062, intron 1 of 4)	intron (NM_026062, intron 1 of 4)	19637.0	NM_026062	67266.0	Mm.277897	NM_026062	ENSMUSG00000029270	Fam69a	2900024C23Rik|AI315274	family with sequence similarity 69, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-4346974-4	chr10	4346881	4347081	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031185, intron 2 of 3)	CpG	40494.0	NM_001359811	381990.0	Mm.262466	NM_001033466	ENSMUSG00000075327	Zbtb2	Gm1103	zinc finger and BTB domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53026172-2	chr4	53026072	53026272	+	869.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1-int|LTR|ERVL-MaLR	14292.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3929642-4	chr19	3929539	3929739	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026316)	promoter-TSS (NM_026316)	77.0	NM_026316	67689.0	Mm.109341	NM_026316	ENSMUSG00000024885	Aldh3b1	1700001N19Rik|ALDH4|ALDH7	aldehyde dehydrogenase 3 family, member B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-143628880-1	chr5	143628780	143628980	+	551.0	f1_c57bl6.idr	intron (NM_011182, intron 1 of 12)	B1_Mur4|SINE|Alu	6433.0	NM_011182	19159.0	Mm.281003	NM_011182	ENSMUSG00000018001	Cyth3	AI648983|ARNO3|CLM3|Grp1|Pscd3	cytohesin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-32510544-4	chr3	32510456	32510656	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144519)	promoter-TSS (NM_144519)	6.0	NM_001161818	67778.0	Mm.285620	NM_144519	ENSMUSG00000027667	Zfp639	6230400O18Rik|ANC-2H01|ZASC1|Znf639	zinc finger protein 639	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99333158-4	chr15	99333062	99333262	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310622, intron 4 of 25)	intron (NM_001310622, intron 4 of 25)	29878.0	NM_001348256	54614.0	Mm.358668	NM_018786	ENSMUSG00000023007	Prpf40b	2610317D23Rik|Hypc	pre-mRNA processing factor 40B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150614364-1	chr4	150614264	150614464	+	569.0	f1_balb.idr	intron (NM_001085492, intron 17 of 22)	intron (NM_001085492, intron 17 of 22)	37810.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	-0.666533928571295	-0.791319994939392	-0.794019417472338	-0.396421240333152	-0.662947191954825	-0.605193395352104	-0.793425465720419	-0.795729583137849	-0.90656587712911	0.734106253933507	1
Merged-chr9-100606201-3	chr9	100606098	100606298	+	822.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35113.0	NM_001101483	245020.0	Mm.236289	NM_001101483	ENSMUSG00000070287	Slc35g2	Gm519|Tmem22	solute carrier family 35, member G2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171222588-4	chr1	171222496	171222696	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001037170)	promoter-TSS (NM_001037170)	-82.0	NM_001037170	641376.0	Mm.288374	NM_001037170	ENSMUSG00000005674	Tomm40l	-	translocase of outer mitochondrial membrane 40-like	protein-coding	6.47928457882651	6.79622947405149	6.94327006991163	6.8343103890249	6.41211625132858	6.24045861217012	6.87996912409631	6.43853161849272	-0.274031455250469	0.18081623269733	0.653453095973907
Merged-chr7-80366103-1	chr7	80366003	80366203	+	568.0	f1_c57bl6.idr	intron (NM_172903, intron 9 of 23)	B1_Mur1|SINE|Alu	5272.0	NM_172903	140481.0	Mm.269245	NM_172903	ENSMUSG00000038886	Man2a2	1700052O22Rik|4931438M07Rik|AI480988|MX|Man IIx	mannosidase 2, alpha 2	protein-coding	1.12226364151151	0.391858920185776	0.38098440354598	1.46802466348279	0.360208810594524	0.394284683678896	1.18269660298827	0.373959603077364	-1.32355605905766	0.483010060448224	0.930898699709434
Merged-chr1-58715567-2	chr1	58715467	58715667	+	753.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355056, intron 1 of 8)	intron (NM_001355056, intron 1 of 8)	2281.0	NM_001355056	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-80319375-4	chr18	80319275	80319475	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001190373, intron 3 of 3)	intron (NM_001190373, intron 3 of 3)	44879.0	NM_001190373	240444.0	Mm.279568	NM_001190373	ENSMUSG00000059852	Kcng2	AA591524	potassium voltage-gated channel, subfamily G, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-116817841-4	chr2	116817736	116817936	+	901.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60855.0	NM_001355572	67356.0	Mm.131623	NM_026104	ENSMUSG00000027355	Tmco5	1700095F04Rik|Tmco5a	transmembrane and coiled-coil domains 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124812087-2	chr6	124811987	124812187	+	844.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_009415, intron 4 of 6)	intron (NM_009415, intron 4 of 6)	2209.0	NM_009415	21991.0	Mm.4222	NM_009415	ENSMUSG00000023456	Tpi1	AI255506|TIM|Tpi|Tpi-1	triosephosphate isomerase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-109212667-2	chr4	109212567	109212767	+	932.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5746.0	NM_001285895	108802.0	Mm.318248	NM_001033226	ENSMUSG00000028558	Calr4	4933403L16Rik|AU017583	calreticulin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-77347504-2	chr11	77347404	77347604	+	645.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291190)	promoter-TSS (NM_001291190)	-776.0	NM_001291190	237860.0	Mm.440381	NM_177710	ENSMUSG00000037926	Ssh2	SSH-2|SSH-2L|mSSH-2L	slingshot protein phosphatase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-87391528-3	chr12	87391423	87391623	+	825.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3168.0	NM_011479	20773.0	Mm.565	NM_011479	ENSMUSG00000021036	Sptlc2	LCB2|LCB2a|Spt2	serine palmitoyltransferase, long chain base subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-35641132-4	chr12	35641020	35641220	+	964.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	45184.0	NR_045051	71581.0	Mm.100110	NR_045050	ENSMUSG00000113985	9130015A21Rik	100043575|Gm4527	RIKEN cDNA 9130015A21 gene	ncRNA	2.57903174945989	1.9113560386512	3.12042097009754	1.14194016962184	1.84847970547501	1.92651304551073	2.28302978722842	1.14681043823069	-1.2176368884586	0.252050086884314	0.749776101430909
Merged-chr2-174077918-4	chr2	174077812	174078012	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001102423, intron 1 of 7)	intron (NM_001102423, intron 1 of 7)	861.0	NM_001102423	228960.0	Mm.277977	NM_172675	ENSMUSG00000027522	Stx16	4930401D03|5430410K23Rik|6330500A18Rik|AI648908|AW553605|Syn16	syntaxin 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141478257-2	chr7	141478157	141478357	+	822.857178	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252588, intron 1 of 7)	intron (NM_001252588, intron 1 of 7)	1877.0	NM_001252588	64540.0	Mm.489619	NM_053082	ENSMUSG00000025511	Tspan4	AI325509|AI746565|D130042I01Rik|NAG-2|Tm4sf7|Tspan-4	tetraspanin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-33213958-4	chr18	33213852	33214052	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133774)	promoter-TSS (NM_133774)	-90.0	NM_001347624	170459.0	Mm.127058	NM_133774	ENSMUSG00000024378	Stard4	4632419C16Rik|9030213J02Rik	StAR-related lipid transfer (START) domain containing 4	protein-coding	6.52985884497756	6.13290696546451	6.70100306586474	5.31163779303805	6.63249856298289	6.61123171483473	5.3885809306456	6.5607037732683	0.131965158735729	0.667898203635519	0.993132800426794
Merged-chr5-29733585-1	chr5	29733485	29733685	+	773.0	f1_balb.idr	Intergenic	Intergenic	-2313.0	NM_001359198	23950.0	Mm.290110	NM_011847	ENSMUSG00000029131	Dnajb6	HSJ-2|Mrj|mDj4	DnaJ heat shock protein family (Hsp40) member B6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-88221252-5	chr1	88221290	88221490	+	662.299988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	-5630.0	NM_001281466	100040766.0	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	Heatr7b1	maestro heat-like repeat family member 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-112116217-4	chr13	112116107	112116307	+	933.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-172244.0	NM_001168403	77318.0	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191087147-4	chr1	191087033	191087233	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11281.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	0.476130353747628	0.517001663337082	1.20148877163432	0.87719175914771	1.190949646919	1.79377410405065	0.506837058099623	0.495449774697807	1.30146641680739	0.435070256146146	0.907227265855066
Merged-chr13-6228521-3	chr13	6228414	6228614	+	873.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-319643.0	NM_145131	69617.0	Mm.41933	NM_145131	ENSMUSG00000021193	Pitrm1	2310012C15Rik|AA410010|MP-1|MP1|Ntup1|PreP|mKIAA1104	pitrilysin metallepetidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-47403353-2	chr14	47403253	47403453	+	738.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144553, intron 10 of 18)	B3|SINE|B2	15054.0	NM_144553	218977.0	Mm.240543	NM_144553	ENSMUSG00000037544	Dlgap5	C77459|C86398|Dap-5|Dlg7|Hurp|mKIAA0008	DLG associated protein 5	protein-coding	-0.799902186879656	-0.429140330751189	-0.216478800392019	-0.795762741921423	-0.799286726000797	-0.788015448494407	-0.792553219016262	-0.795326855369012	-3.13842637334584	0.284211766590417	1
Merged-chr19-37511093-4	chr19	37510992	37511192	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39326.0	NM_175353	107371.0	Mm.24865	NM_175353	ENSMUSG00000053799	Exoc6	4833405E05Rik|AW413330|C430002C19|Sec15|Sec15l1|hbd|msec15	exocyst complex component 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52579691-4	chr13	52579576	52579776	+	933.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(GGGA)n|Simple_repeat|Simple_repeat	-3761.0	NM_001198977	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-49843944-2	chr16	49843844	49844044	+	720.799988	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A2-int|LTR|ERVL-MaLR	-11710.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70647017-4	chr8	70646934	70647134	+	870.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_023217, exon 5 of 5)	3' UTR (NM_023217, exon 5 of 5)	12704.0	NM_023217	66522.0	Mm.154906	NM_023217	ENSMUSG00000056204	Pgpep1	2810003H13Rik|Gm19458|PAP-I|PGP|PGP-I|PGPI|Pcp	pyroglutamyl-peptidase I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-3475059-4	chr2	3474960	3475160	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022724)	promoter-TSS (NM_022724)	-74.0	NR_027509	64707.0	Mm.23483	NM_022724	ENSMUSG00000026646	Suv39h2	4930507K23Rik|AA536750|D030054H19Rik|D2Ertd544e|KMT1B	suppressor of variegation 3-9 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139510773-2	chr5	139510673	139510873	+	595.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR31D_MM|LTR|ERVK	-12978.0	NR_040701	74973.0	Mm.141282	NR_040701	ENSMUSG00000106056	4930500L23Rik	-	RIKEN cDNA 4930500L23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-160873081-4	chr2	160872971	160873171	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177263)	promoter-TSS (NM_177263)	-81.0	NM_177263	320799.0	Mm.436734	NM_177263	ENSMUSG00000035877	Zhx3	1810059C13Rik|4932418O04Rik|9530010N21Rik|Tix1|mKIAA0395	zinc fingers and homeoboxes 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-143679779-4	chr5	143679684	143679884	+	873.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163548, intron 1 of 12)	intron (NM_001163548, intron 1 of 12)	28543.0	NM_001163548	19159.0	Mm.281003	NM_011182	ENSMUSG00000018001	Cyth3	AI648983|ARNO3|CLM3|Grp1|Pscd3	cytohesin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-104888176-4	chr2	104888097	104888297	+	965.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177600, intron 1 of 17)	MIRb|SINE|MIR	1873.0	NM_177600	211936.0	Mm.416538	NM_177600	ENSMUSG00000045106	Ccdc73	2210415I11Rik|4931417A20|AV080665|BC095976	coiled-coil domain containing 73	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-119801125-4	chr13	119801019	119801219	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9997.0	NM_001302550	72465.0	Mm.139115	NM_028245	ENSMUSG00000094870	Zfp131	2610109I01Rik|AW558871|Znf131	zinc finger protein 131	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-126162739-4	chr4	126162616	126162816	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025856)	promoter-TSS (NM_025856)	-51.0	NM_025856	66938.0	Mm.29813	NM_025856	ENSMUSG00000073758	Sh3d21	1700029G01Rik|AU019788	SH3 domain containing 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-27163119-2	chr7	27163019	27163219	+	599.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357767, intron 1 of 4)	intron (NM_001357767, intron 1 of 4)	2609.0	NM_001357767	112406.0	Mm.29978	NM_053208	ENSMUSG00000058709	Egln2	0610011A13Rik|C85656|Hif-p4h-1|Ier4|Phd1|SM-20	egl-9 family hypoxia-inducible factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-98759193-1	chr10	98759093	98759293	+	554.0	f0_balb.idr	Intergenic	Intergenic	-155449.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-113507873-2	chr13	113507773	113507973	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR10C|LTR|ERVK	-5029.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117964912-2	chr11	117964812	117965012	+	586.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4454.0	NM_007707	12702.0	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-121329526-3	chr1	121329399	121329599	+	913.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178082, intron 1 of 5)	MTEb|LTR|ERVL-MaLR	-1475.0	NM_133748	72999.0	Mm.27136	NM_133748	ENSMUSG00000003721	Insig2	2900053I11Rik|C730043J18Rik|Insig-2	insulin induced gene 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-93850778-1	chr2	93850678	93850878	+	608.0	f0_balb.idr	promoter-TSS (NM_001290782)	promoter-TSS (NM_001290782)	-835.0	NM_001290782	329470.0	Mm.486910	NM_183220	ENSMUSG00000040272	Accs	2610203E10Rik|Phacs	1-aminocyclopropane-1-carboxylate synthase (non-functional)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-58163582-3	chr2	58163461	58163661	+	832.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045895)	promoter-TSS (NR_045895)	-413.0	NR_045896	100042926.0	Mm.446515	NR_045895	ENSMUSG00000086862	Gm13546	-	predicted gene 13546	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-88683097-4	chr10	88682979	88683179	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011461)	promoter-TSS (NM_011461)	-56.0	NM_011461	20728.0	Mm.21642	NM_011461	ENSMUSG00000004359	Spic	AU019198|C76795|Prf|Spi-C	Spi-C transcription factor (Spi-1/PU.1 related)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-17589322-4	chr10	17589223	17589423	+	946.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-133905.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6949764-2	chr19	6949664	6949864	+	915.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285453, intron 2 of 3)	intron (NM_001285453, intron 2 of 3)	7202.0	NM_001285453	12015.0	Mm.4387	NM_007522	ENSMUSG00000024959	Bad	AI325008|Bbc2	BCL2-associated agonist of cell death	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-98396071-4	chr4	98395981	98396181	+	978.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005784, intron 1 of 19)	CpG	255.0	NM_172696	12695.0	Mm.90218	NM_007704	ENSMUSG00000061859	Patj	Cipp|Inadl	PATJ, crumbs cell polarity complex component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-24800570-2	chr5	24800470	24800670	+	708.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41791.0	NM_053075	19744.0	Mm.319175	NM_053075	ENSMUSG00000028945	Rheb	Rheb1	Ras homolog enriched in brain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-158306355-4	chr2	158306249	158306449	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008489)	promoter-TSS (NM_008489)	-144.0	NM_008489	16803.0	Mm.218846	NM_008489	ENSMUSG00000016024	Lbp	Bpifd2|Ly88	lipopolysaccharide binding protein	protein-coding	5.71472103788244	5.4576276347702	5.36000691947383	4.68372388381773	4.61448333424213	4.2683174992325	4.55757121331607	3.47445925080794	-1.2757083716936	0.00084555777850631	0.0168880764513944
Merged-chr11-53760140-2	chr11	53760040	53760240	+	976.916626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3514.0	NR_106131	102465772.0		NR_106131	ENSMUSG00000099153	Mir7671	Gm27802|mmu-mir-7671	microRNA 7671	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-10315715-2	chr3	10315615	10315815	+	690.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_018864, intron 8 of 8)	intron (NM_018864, intron 8 of 8)	-14532.0	NM_029310	75497.0	Mm.47052	NM_029310	ENSMUSG00000027530	Fabp12	1700008G05Rik	fatty acid binding protein 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-33389047-3	chr12	33388982	33389182	+	904.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131031, intron 1 of 3)	intron (NR_131031, intron 1 of 3)	5678.0	NR_131031	75836.0	Mm.410807	NR_131031	ENSMUSG00000085664	Atxn7l1os2	4930556N08Rik	ataxin 7-like 1, opposite strand 2	ncRNA	2.93499417566263	3.38534473709593	2.72620285192907	3.61301146051823	3.12771142729296	3.21379738535658	2.74808838475087	3.7449284073021	0.083448525893214	0.892375161306222	0.998431161219273
Merged-chr7-44358521-4	chr7	44358430	44358630	+	873.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001034115)	TTS (NM_001034115)	16500.0	NM_027049	69349.0	Mm.358922	NM_027049	ENSMUSG00000008028	1700008O03Rik	-	RIKEN cDNA 1700008O03 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-84685660-3	chr15	84685553	84685753	+	981.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146061, intron 1 of 7)	intron (NM_146061, intron 1 of 7)	4655.0	NM_146061	109270.0	Mm.291372	NM_146061	ENSMUSG00000036106	Prr5	AU043908|Arhgap8|C030017C09Rik|C78947|Protor-1|Protor1	proline rich 5 (renal)	protein-coding	2.11097280920559	2.02226715227827	1.95451275537373	1.20347514711737	1.82015618163334	2.16895409137855	2.48955440152394	1.61562505245666	0.524760834181257	0.603947760900713	0.973685196894215
Merged-chr9-32475204-4	chr9	32475100	32475300	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008026, intron 2 of 8)	intron (NM_008026, intron 2 of 8)	66252.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-35266874-1	chr12	35266774	35266974	+	676.0	f0_balb.idr	Intergenic	Intergenic	-71977.0	NR_030449	751520.0		NR_030449	ENSMUSG00000076253	Mir680-3	Mirn680-3	microRNA 680-3	ncRNA	1.79196383421701	1.82024988020405	2.07551324241432	1.88067734936318	2.15591728402293	2.16115401298212	2.21955291731215	2.8225826393607	1.24239017158803	0.160232510468206	0.62016942789409
Merged-chr3-9696765-4	chr3	9696635	9696835	+	848.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053182, intron 6 of 7)	intron (NM_053182, intron 6 of 7)	-86650.0	NM_133218	170753.0	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117673690-4	chr8	117673584	117673784	+	897.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357272)	promoter-TSS (NM_001357272)	5.0	NM_001357273	74032.0	Mm.296302	NM_028725	ENSMUSG00000034308	Sdr42e1	4632417N05Rik|AI117603	short chain dehydrogenase/reductase family 42E, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-86122800-2	chr3	86122700	86122900	+	686.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001082414, intron 12 of 14)	intron (NM_001082414, intron 12 of 14)	16058.0	NR_004417	19870.0		NR_004417	ENSMUSG00000064984	Snord73a	Rnu73a|U73a	small nucleolar RNA, C/D box U73A	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-86154115-3	chr1	86154057	86154257	+	848.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310702)	promoter-TSS (NM_001310702)	-623.0	NM_030184	78795.0	Mm.379264	NM_027456	ENSMUSG00000062590	Armc9	3830422A13Rik|4831423D23Rik|4930438O05Rik|5730415N24Rik	armadillo repeat containing 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-32329363-2	chr11	32329263	32329463	+	858.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR11B|LTR|ERVK	-18448.0	NM_177364	268396.0	Mm.227616	NM_177364	ENSMUSG00000040711	Sh3pxd2b	G431001E03Rik|TSK4|fad49	SH3 and PX domains 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-62674080-5	chr4	62673871	62674071	+	924.7800289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310706)	promoter-TSS (NM_001310706)	-3.0	NM_001310706	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-25881896-4	chr18	25881791	25881991	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-127734.0	NM_001362334	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-60823332-4	chr15	60823244	60823444	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001162926, exon 2 of 2)	exon (NM_001162926, exon 2 of 2)	379.0	NR_030696	320469.0	Mm.230853	NM_177166		9930014A18Rik	-	RIKEN cDNA 9930014A18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-145343012-4	chr6	145342871	145343071	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-44654.0	NR_003625	381827.0	Mm.179075	NM_001001987		1700073E17Rik	-	ribosomal protein L7 pseudogene	pseudo	4.41879702038788	4.72612146788174	4.86829938191366	4.26772692663212	3.66105396464994	4.97057275580989	3.89774458691587	3.77550974486886	-0.527974023128013	0.232855135389291	0.727930149661469
Merged-chr5-112298358-4	chr5	112298271	112298471	+	976.883301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001326590, intron 1 of 5)	intron (NM_001326590, intron 1 of 5)	21680.0	NM_009419	22022.0	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123888767-1	chr5	123888667	123888867	+	540.0	f1_c57bl6.idr	Intergenic	Intergenic	-8747.0	NM_175520	243270.0	Mm.33362	NM_175520	ENSMUSG00000049241	Hcar1	Gpr81	hydrocarboxylic acid receptor 1	protein-coding	-0.902479848333508	-1.02144765844943	-0.863736076367498	-0.62649151721534	-1.03913155476818	-1.01904219257639	-1.03003503871055	-1.03617825052874	-2.66366102193303	0.36528983588203	1
Merged-chr7-27535337-2	chr7	27535237	27535437	+	544.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001317355, intron 11 of 13)	B4A|SINE|B4	12076.0	NM_001033315	233020.0	Mm.429716	NM_001033315	ENSMUSG00000040424	Hipk4	Gm162	homeodomain interacting protein kinase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95647105-2	chr3	95647005	95647205	+	659.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11616.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-94785889-4	chr8	94785769	94785969	+	899.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13689.0	NM_009142	20312.0	Mm.103711	NM_009142	ENSMUSG00000031778	Cx3cl1	AB030188|ABCD-3|AI848747|CX3C|Cxc3|D8Bwg0439e|Scyd1	chemokine (C-X3-C motif) ligand 1	protein-coding	-1.06932346315282	-1.04545378193536	-0.220844647149311	-1.06494782147003	-1.06867040657128	-1.04264807175102	-1.05547001227371	-1.06448932552894	-3.08190232315036	0.346744811462451	1
Merged-chr16-38452743-4	chr16	38452628	38452828	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007414)	promoter-TSS (NM_007414)	-39.0	NM_007414	11544.0	Mm.20047	NM_007414	ENSMUSG00000002844	Adprh	Arh1	ADP-ribosylarginine hydrolase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-104258902-1	chr7	104258802	104259002	+	910.6666869999999	f0_c57.idr	intron (NM_030684, intron 4 of 7)	(TTC)n|Simple_repeat|Simple_repeat	14445.0	NM_030684	94094.0	Mm.326945	NM_030684	ENSMUSG00000056144	Trim34a	Trim34|Trim34-1	tripartite motif-containing 34A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-74647540-2	chr11	74647440	74647640	+	603.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-1955.0	NM_001081158	74148.0	Mm.214574	NM_001081158	ENSMUSG00000020741	Cluh	1300001I01Rik|Kiaa0664|mKIAA0664	clustered mitochondria (cluA/CLU1) homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-30595134-1	chr14	30595034	30595234	+	619.0	f1_balb.idr	TTS (NM_001310682)	TTS (NM_001310682)	15176.0	NM_001310682	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-98481202-2	chr7	98481102	98481302	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13020.0	NM_001113379	434215.0	Mm.323057	NM_001113379	ENSMUSG00000090958	Lrrc32	AI426318|D11S833Eh|D7H11S833E|EG434215|Garp	leucine rich repeat containing 32	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-45108199-2	chr2	45108099	45108299	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_149354, intron 2 of 2)	intron (NR_149354, intron 2 of 2)	2078.0	NM_001289521	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89210316-4	chr3	89210214	89210414	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013604, exon 5 of 8)	exon (NM_013604, exon 5 of 8)	4021.0	NM_013604	17827.0	Mm.280943	NM_013604	ENSMUSG00000064068	Mtx1	Gcap6|Mtx	metaxin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167756660-2	chr2	167756560	167756760	+	854.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1A|DNA|hAT-Charlie	65483.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-4197271-4	chr12	4197221	4197421	+	932.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159537, intron 7 of 21)	MTD|LTR|ERVL-MaLR	36644.0	NM_134046	52504.0	Mm.70546	NM_134046	ENSMUSG00000020652	Cenpo	2810429O05Rik|8430427C03Rik|D12Ertd482e	centromere protein O	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-122052048-4	chr10	122051940	122052140	+	987.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4725.0	NM_001081037	117600.0	Mm.288698	NM_001081037	ENSMUSG00000020121	Srgap1	4930572H05Rik|Arhgap13	SLIT-ROBO Rho GTPase activating protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134921057-2	chr6	134920954	134921154	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_009875, exon 1 of 3)	exon (NM_009875, exon 1 of 3)	653.0	NM_009875	12576.0	Mm.2958	NM_009875	ENSMUSG00000003031	Cdkn1b	AA408329|AI843786|Kip1|p27|p27Kip1	cyclin-dependent kinase inhibitor 1B	protein-coding	1.64232495052702	1.01239643164326	2.44436879968114	2.28523627457636	1.161541237537	2.64160593821422	0.990601554775706	1.22060919976921	-0.586223018727785	0.628897854303318	0.981055511574238
Merged-chr15-97064260-3	chr15	97064161	97064361	+	887.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8305.0	NM_027052	69354.0	Mm.250980	NM_027052	ENSMUSG00000022464	Slc38a4	1110012E16Rik|1700012A18Rik|Ata3|mATA3|mNAT3	solute carrier family 38, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-17160436-4	chr11	17160323	17160523	+	999.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024459, intron 1 of 5)	intron (NM_024459, intron 1 of 5)	1125.0	NM_024459	19058.0	Mm.41840	NM_024459	ENSMUSG00000033953	Ppp3r1	CaNB1|Cnb1|MCIP1	protein phosphatase 3, regulatory subunit B, alpha isoform (calcineurin B, type I)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-35297589-4	chr11	35297501	35297701	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011412, intron 4 of 35)	intron (NM_011412, intron 4 of 35)	176145.0	NM_011412	20564.0	Mm.478604	NM_011412	ENSMUSG00000056427	Slit3	Slil2|Slit1|b2b2362.1Clo	slit guidance ligand 3	protein-coding	4.47445277513674	4.83372258617508	4.95765644038727	4.69066709461206	4.20784096615185	4.20308444864742	4.13488507273805	3.71235512956228	-0.858908051032692	0.0258463798971182	0.214358202308035
Merged-chr1-29805054-1	chr1	29804954	29805154	+	580.0	f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	383566.0	NR_105760	102465174.0		NR_105760	ENSMUSG00000099257	Mir6342	Gm27268|mmu-mir-6342	microRNA 6342	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-47176204-4	chr6	47176110	47176310	+	877.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004357, intron 20 of 23)	intron (NM_001004357, intron 20 of 23)	-68186.0	NM_025771	66797.0	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	0.581720112187733	0.323118317194002	0.657717434607499	0.756210463305364	0.45639107264935	0.324827946921702	0.317190990275305	1.22850456695904	0.389874020044863	0.82518953947917	1
Merged-chr17-87176251-3	chr17	87176144	87176344	+	803.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18698.0	NR_046016	399626.0	Mm.396062	NR_046016		C330024C12Rik	-	RIKEN cDNA C330024C12 gene	ncRNA	1.41621231446214	2.48810091075733	0.787409085855366	1.8486516161288	1.14383787473342	0.813196741394477	0.792136711838284	1.37600247579049	-2.41092513599019	0.0740412696389333	0.410891375174802
Merged-chr6-47748525-3	chr6	47748434	47748634	+	873.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	4.5SRNA|scRNA|scRNA	-4303.0	NR_002841	19799.0		NR_002841		Rn4.5s	-	4.5S RNA	rRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-169874124-1	chr2	169874024	169874224	+	683.0	f0_balb.idr	intron (NM_080455, intron 1 of 1)	intron (NM_080455, intron 1 of 1)	89063.0	NR_131974	446211.0	Mm.266854	NR_131974	ENSMUSG00000103935	AY702102	STDP1	cDNA sequence AY702102	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-75855340-3	chr12	75855247	75855447	+	755.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005510, intron 2 of 115)	intron (NM_001005510, intron 2 of 115)	37029.0	NM_001005510	319565.0	Mm.26652	NM_001005510	ENSMUSG00000063450	Syne2	6820443O06Rik|AW546258|Cpfl8|D12Ertd777e|KASH2|NUA|Nesp2g|dice|mKIAA1011	spectrin repeat containing, nuclear envelope 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-95850723-4	chr10	95850625	95850825	+	973.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-89938.0	NM_001001932	216238.0	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-3330407-2	chr7	3330338	3330538	+	709.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011102, exon 18 of 18)	3' UTR (NM_011102, exon 18 of 18)	-2517.0	NM_133189	81904.0	Mm.214994	NM_133189	ENSMUSG00000069806	Cacng7	-	calcium channel, voltage-dependent, gamma subunit 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-93494262-1	chr10	93494162	93494362	+	615.5	f0_balb.idr	intron (NM_010401, intron 8 of 19)	CT-rich|Low_complexity|Low_complexity	5494.0	NM_010401	15109.0	Mm.13000	NM_010401	ENSMUSG00000020017	Hal	Hsd|his|histidase	histidine ammonia lyase	protein-coding	0.93112166956729	1.83592293980849	0.985700743029047	1.71113148972636	2.56875064925091	2.11233074061569	1.91478962938176	0.969295979196026	1.62961933183083	0.191196218482245	0.669546561020494
Merged-chr1-161951214-2	chr1	161951113	161951313	+	755.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001204904, intron 5 of 6)	intron (NM_001204904, intron 5 of 6)	17935.0	NM_001204905	75368.0	Mm.108728	NM_001204904	ENSMUSG00000086277	4930558K02Rik	-	RIKEN cDNA 4930558K02 gene	protein-coding	0.978814105190103	1.63155515685135	1.05695635682636	1.86425763522896	2.61767376294412	2.72518030811729	1.06481202140284	3.00377609263328	2.6999805259942	0.0177880662022266	0.164592199198701
Merged-chr11-98740260-2	chr11	98740160	98740360	+	737.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1525.0	NM_178060	21833.0	Mm.265917	NM_178060	ENSMUSG00000058756	Thra	6430529J03Rik|AW259572|Erba|Nr1a1|Rvr|T3R[a]|T3Ralpha|Thra1|Thra2|c-erbA-1|c-erbA-alpha|c-erbAalpha	thyroid hormone receptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70898216-4	chr8	70898117	70898317	+	904.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029751)	promoter-TSS (NM_029751)	-774.0	NM_029751	76808.0	Mm.379251	NM_029751	ENSMUSG00000045128	Rpl18a	2510019J09Rik	ribosomal protein L18A	protein-coding	3.73180316367543	3.96437333945507	3.59570056055922	3.40330146902803	4.71911611811095	3.74913867754921	3.53314671918015	4.31525828024913	0.683913921963216	0.163974217222577	0.62734778642745
Merged-chr14-25521041-2	chr14	25520941	25521141	+	703.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 2 of 23)	intron (NM_183208, intron 2 of 23)	-13398.0	NR_037236	100526533.0		NR_037236	ENSMUSG00000093081	Mir3075	mir-3075|mmu-mir-3075	microRNA 3075	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-65114981-2	chr1	65114881	65115081	+	670.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175293, intron 5 of 7)	ID_B1|SINE|B4	8233.0	NM_175293	98303.0	Mm.348057	NM_175293	ENSMUSG00000044816	D630023F18Rik	AI314969	RIKEN cDNA D630023F18 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-163601503-2	chr2	163601411	163601611	+	583.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181734)	promoter-TSS (NM_181734)	-803.0	NM_181734	76080.0	Mm.89828	NM_029512	ENSMUSG00000017679	Ttpal	3110080A02Rik|5830472M02Rik	tocopherol (alpha) transfer protein-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-87471529-2	chr12	87471429	87471629	+	615.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025507, intron 1 of 13)	intron (NM_025507, intron 1 of 13)	770.0	NM_025507	66354.0	Mm.271174	NM_025507	ENSMUSG00000021039	Snw1	2310008B08Rik|AW048543|NCoA-62|SKIP|Skiip	SNW domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-37855542-3	chr13	37855450	37855650	+	758.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039188, intron 1 of 9)	intron (NM_001039188, intron 1 of 9)	28157.0	NM_001039188	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-28751331-1	chr12	28751231	28751431	+	1000.0	f1_balb.idr	promoter-TSS (NM_178811)	promoter-TSS (NM_178811)	-497.0	NM_201357	380752.0	Mm.273724	NM_201357	ENSMUSG00000036613	Eipr1	D12Ertd604e|Tssc1	EARP complex and GARP complex interacting protein 1	protein-coding	0.692396821517699	0.730451711133174	0.718156095597498	1.31667675105201	1.13820296067575	1.43232274296725	1.68054414957429	1.20309224553484	2.20092433441336	0.138281181346216	0.580374631690263
Merged-chr16-91543307-2	chr16	91543207	91543407	+	568.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Arthur1|DNA|hAT-Tip100	-3787.0	NM_008338	15980.0	Mm.249364	NM_008338	ENSMUSG00000022965	Ifngr2	Ifgr2|Ifgt	interferon gamma receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-95021080-2	chr8	95020980	95021180	+	926.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_173036, exon 2 of 12)	exon (NM_173036, exon 2 of 12)	3388.0	NM_173036	54672.0	Mm.27995	NM_173036	ENSMUSG00000060470	Adgrg3	A030001G24Rik|AW214383|Gpr97|Pb1|Pb99	adhesion G protein-coupled receptor G3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84986803-1	chr8	84986703	84986903	+	1000.0	f1_c57bl6.idr	Intergenic	Intergenic	-3792.0	NM_133255	170833.0	Mm.247775	NM_133255	ENSMUSG00000052566	Hook2	A630054I03Rik	hook microtubule tethering protein 2	protein-coding	1.39159523590247	0.665759921755872	0.658247788481048	1.34187757350851	0.903838838481991	0.667459843797224	0.979005191899093	1.06986713173627	-0.850846169225191	0.589163445375704	0.968865306825047
Merged-chr11-119955658-4	chr11	119955545	119955745	+	926.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037754, intron 1 of 13)	intron (NM_001037754, intron 1 of 13)	12553.0	NM_130862	108100.0	Mm.197534	NM_130862	ENSMUSG00000025372	Baiap2	IRSp53|R75030	brain-specific angiogenesis inhibitor 1-associated protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-20165503-2	chr13	20165403	20165603	+	711.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	74996.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-68244589-4	chr18	68244441	68244641	+	824.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357444, intron 2 of 3)	intron (NM_001357444, intron 2 of 3)	16432.0	NR_106078	102465702.0		NR_106078	ENSMUSG00000098253	Mir7219	Gm27613|mmu-mir-7219	microRNA 7219	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-123123321-4	chr6	123123242	123123442	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011999)	promoter-TSS (NM_011999)	26.0	NM_001170333	26888.0	Mm.47384	NM_011999	ENSMUSG00000030148	Clec4a2	Clec4a|Clecsf6|DCIR|Dcir1	C-type lectin domain family 4, member a2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-19066793-1	chr10	19066693	19066893	+	546.0	f1_c57bl6.idr	Intergenic	Intergenic	-51383.0	NM_009397	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-76429076-4	chr14	76428970	76429170	+	998.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207652, intron 1 of 2)	intron (NM_207652, intron 1 of 2)	13249.0	NM_207652	21807.0	Mm.153272	NM_009366	ENSMUSG00000022010	Tsc22d1	AA589566|AW105905|Egr5|TSC-22|Tgfb1i4|Tsc|Tsc22	TSC22 domain family, member 1	protein-coding	-0.501157386154278	0.0108082165365684	-0.492967167247549	-0.496046184791902	0.159110840820481	-0.488076550678428	-0.492086946242894	-0.495508295564876	0.514377342850211	0.852866980006548	1
Merged-chr1-160882212-3	chr1	160882118	160882318	+	911.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-24193.0	NM_001024952	381305.0	Mm.329667	NM_001024952	ENSMUSG00000040423	Rc3h1	5730557L09Rik|Gm551|N28103|mKIAA2025	RING CCCH (C3H) domains 1	protein-coding	1.27913855520062	3.39219593216661	1.3894056022819	3.18627186014365	3.22586286579927	2.37942966401955	2.44365130368359	2.81120114112659	0.160559848635634	0.865162634337778	0.998431161219273
Merged-chr15-64191458-4	chr15	64191365	64191565	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 5 of 28)	intron (NM_001276461, intron 5 of 28)	121208.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	3.5952089272751	2.63990315126717	3.16546409957503	3.16653245046853	3.10980752106919	3.57021883156207	4.01170529231699	1.89011294878823	0.261123732218535	0.704310833636542	0.998431161219273
Merged-chr2-91967491-1	chr2	91967391	91967591	+	897.0	f1_balb.idr	Intergenic	RSINE1|SINE|B4	-3928.0	NM_138306	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	1.88275799457736	1.91913215645347	1.411767090168	0.959043811213331	2.13870983891576	1.0029341417766	0.981216524645153	2.25939656443124	0.414467798456903	0.748396219114243	0.998431161219273
Merged-chr1-134699196-3	chr1	134699097	134699297	+	940.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009307, intron 2 of 9)	MIRc|SINE|MIR	-10103.0	NM_001355726	20980.0	Mm.5102	NM_009307	ENSMUSG00000026452	Syt2	IP4BP|R74640|mKIAA4194|sytII	synaptotagmin II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-105706266-1	chr4	105706166	105706366	+	581.0	f0_balb.idr	Intergenic	Intergenic	-534947.0	NR_151521	105244641.0	Mm.404914	NR_151521		Gm12724	-	predicted gene 12724	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-106567669-3	chr1	106567574	106567774	+	652.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009741, intron 1 of 1)	intron (NM_009741, intron 1 of 1)	-21043.0	NR_106164	102466254.0		NR_106164	ENSMUSG00000098344	Mir3473f	Gm27846|mmu-mir-3473f	microRNA 3473f	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-39504411-3	chr1	39504312	39504512	+	694.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-25657.0	NM_001357521	54610.0	Mm.387293	NM_018775	ENSMUSG00000003134	Tbc1d8	AD3|HBLP1|VRP	TBC1 domain family, member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-45443238-2	chr13	45443138	45443338	+	795.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	53496.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-45451050-2	chr9	45450950	45451150	+	893.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081270, intron 3 of 32)	intron (NM_001081270, intron 3 of 32)	-19818.0	NR_040732	74602.0	Mm.394117	NR_040732	ENSMUSG00000097074	4833428L15Rik	-	RIKEN cDNA 4833428L15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141998825-4	chr4	141998723	141998923	+	995.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177868, intron 2 of 31)	intron (NM_177868, intron 2 of 31)	12828.0	NM_177868	329977.0	Mm.252019	NM_028429	ENSMUSG00000051435	Fhad1	2900090M10Rik|B230311F11	forkhead-associated (FHA) phosphopeptide binding domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-37237617-2	chr9	37237517	37237717	+	600.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145960, intron 8 of 18)	intron (NM_001145960, intron 8 of 18)	18121.0	NM_020258	56857.0	Mm.440037	NM_020258	ENSMUSG00000032122	Slc37a2	G3PP|Slc37a1|cI-2|ci2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-71285358-3	chr11	71285255	71285455	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027858)	promoter-TSS (NR_027858)	-123.0	NR_027858	627984.0	Mm.390378	NM_001039234	ENSMUSG00000092528	Nlrp1c-ps	Nalp1c|Nlrp1c	NLR family, pyrin domain containing 1C, pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-112801755-3	chr10	112801656	112801856	+	802.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35996.0	NR_152199	100042639.0	Mm.403280	NR_152199		Gm3942	-	predicted gene 3942	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-25793218-4	chr13	25793109	25793309	+	953.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	173107.0	NR_045062	100503530.0	Mm.86763	NR_045062	ENSMUSG00000086531	Gm11351	-	predicted gene 11351	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-80260492-4	chr12	80260388	80260588	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346669)	promoter-TSS (NM_001346669)	-107.0	NM_001346669	109711.0	Mm.253564	NM_134156	ENSMUSG00000015143	Actn1	3110023F10Rik|Actn1a	actinin, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81124006-2	chr10	81123906	81124106	+	648.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001347144, exon 11 of 11)	3' UTR (NM_001347144, exon 11 of 11)	-12265.0	NM_010731	16969.0	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-40776452-3	chr11	40776351	40776551	+	679.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger13a|DNA|TcMar-Tigger	-21165.0	NM_009831	12450.0	Mm.2103	NM_009831	ENSMUSG00000020326	Ccng1	AI314029	cyclin G1	protein-coding	1.31878908001817	0.998168069571364	0.972721152309232	1.83477726366381	1.33027531766604	1.50236245679793	2.40965352404263	2.59975260652543	2.12427904091331	0.0717238549776693	0.403554349176712
Merged-chr14-60784570-4	chr14	60784482	60784682	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040642)	promoter-TSS (NR_040642)	16.0	NR_040642	70478.0	Mm.274650	NM_027436	ENSMUSG00000021993	Mipep	5730405E07Rik|MIP	mitochondrial intermediate peptidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64634972-4	chr5	64634885	64635085	+	851.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC|LINE|L1	-24286.0	NR_045078	100042198.0	Mm.25191	NR_045078	ENSMUSG00000105402	Gm3716	Gm1683	predicted gene 3716	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-66823316-2	chr14	66823216	66823416	+	696.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009955, intron 8 of 13)	intron (NM_009955, intron 8 of 13)	45284.0	NM_009955	12934.0	Mm.352648	NM_009955	ENSMUSG00000022048	Dpysl2	AI851130|Crmp2|DRP2|Musunc33|TOAD-64|Ulip2	dihydropyrimidinase-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-13009572-2	chr17	13009472	13009672	+	699.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013671, intron 2 of 4)	B2_Mm2|SINE|B2	1733.0	NM_013671	20656.0	Mm.290876	NM_013671	ENSMUSG00000006818	Sod2	MnSOD|Sod-2	superoxide dismutase 2, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-73892143-4	chr2	73892045	73892245	+	959.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025093, intron 1 of 14)	CpG	494.0	NM_001284371	11909.0	Mm.209903	NM_009715	ENSMUSG00000027104	Atf2	Atf-2|CRE-BP|Creb2|D130078H02Rik|D18875|Tg(Gzma-Klra1)7Wum|mXBP	activating transcription factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-138228270-2	chr5	138228170	138228370	+	767.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013773, intron 1 of 5)	B3|SINE|B2	2366.0	NM_001013773	381680.0	Mm.156846	NM_001013773	ENSMUSG00000047592	Nxpe5	-	neurexophilin and PC-esterase domain family, member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166825160-2	chr2	166825060	166825260	+	976.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085495, intron 1 of 38)	intron (NM_001085495, intron 1 of 38)	19579.0	NM_001085495	99371.0	Mm.297192	NM_001085495	ENSMUSG00000074582	Arfgef2	AI463430|AW493672|BIG2|E230011G24Rik	ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-99186433-4	chr13	99186352	99186552	+	749.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004149, intron 1 of 4)	intron (NM_001004149, intron 1 of 4)	1629.0	NM_001004149	238803.0	Mm.343207	NM_001004149	ENSMUSG00000050919	Zfp366	DC-SCRIPT|Znf366	zinc finger protein 366	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-55063480-3	chr13	55063381	55063581	+	580.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_121592, intron 6 of 13)	intron (NR_121592, intron 6 of 13)	30925.0	NM_001359757	20184.0	Mm.259301	NM_011307	ENSMUSG00000025878	Uimc1	9430016E08Rik|D330018D10Rik|D630032M02Rik|RIP110|Rxrip110	ubiquitin interaction motif containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-173020510-2	chr2	173020410	173020610	+	906.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1392.0	NM_019547	56190.0	Mm.485782	NM_019547	ENSMUSG00000027510	Rbm38	Rnpc1|Seb4|Seb4l	RNA binding motif protein 38	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-35119767-2	chr7	35119667	35119867	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001287515, exon 1 of 1)	exon (NM_001287515, exon 1 of 1)	474.0	NM_007678	12606.0	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-37971903-3	chr5	37971806	37972006	+	745.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-67324.0	NM_001289536	71116.0	Mm.18959	NM_026959	ENSMUSG00000029125	Stx18	1810035L21Rik|4933425D03Rik|AU041562	syntaxin 18	protein-coding	2.29257706812893	2.49263234156339	1.45746792016472	1.42368892155417	2.45648243533926	1.89833996112348	1.46693277696233	2.04505902468162	0.018793599248443	0.985196722267219	0.998431161219273
Merged-chr12-86950780-4	chr12	86950679	86950879	+	996.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173735, intron 1 of 3)	intron (NM_173735, intron 1 of 3)	3436.0	NM_001289432	217732.0	Mm.22337	NM_173735	ENSMUSG00000034157	Cipc	2310044G17Rik|AI842544|AI853744|Kiaa1737|mKIAA1737	CLOCK interacting protein, circadian	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-7725980-4	chr10	7725875	7726075	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011835)	promoter-TSS (NM_011835)	-25.0	NM_011835	23924.0	Mm.28127	NM_011835	ENSMUSG00000019794	Katna1	-	katanin p60 (ATPase-containing) subunit A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-35297984-2	chr11	35297884	35298084	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011412, intron 4 of 35)	intron (NM_011412, intron 4 of 35)	176528.0	NM_011412	20564.0	Mm.478604	NM_011412	ENSMUSG00000056427	Slit3	Slil2|Slit1|b2b2362.1Clo	slit guidance ligand 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-44070365-4	chr1	44070262	44070462	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32079.0	NM_029368	75623.0	Mm.348017	NM_029368	ENSMUSG00000026049	Tex30	1700029F09Rik|3110030D08Rik	testis expressed 30	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-43784308-1	chr5	43784208	43784408	+	1000.0	f1_balb.idr	Intergenic	Intergenic	-2159.0	NM_178729	242960.0	Mm.25794	NM_178729	ENSMUSG00000039753	Fbxl5	Fbl4|Fir4	F-box and leucine-rich repeat protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-46647062-2	chr17	46646962	46647162	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029091)	promoter-TSS (NM_029091)	833.0	NM_025302	27398.0	Mm.391007	NM_025302	ENSMUSG00000002767	Mrpl2	CGI-22|L2mt|MRP-L14|MRP-L2|Rpml14	mitochondrial ribosomal protein L2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28327052-2	chr17	28326952	28327152	+	631.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001163820)	TTS (NM_001163820)	-1419.0	NM_011287	19896.0	Mm.336955	NM_011287	ENSMUSG00000037805	Rpl10a	CsA-19|Nedd6	ribosomal protein L10A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-25412236-6	chr14	25412069	25412269	+	770.527771	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47016.0	NM_001310666	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-87474025-2	chr11	87473925	87474125	+	776.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199293, intron 2 of 30)	(CAAAA)n|Simple_repeat|Simple_repeat	46434.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-95340860-2	chr8	95340760	95340960	+	672.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133954, intron 3 of 6)	intron (NM_133954, intron 3 of 6)	8576.0	NM_133954	101985.0	Mm.29069	NM_133954	ENSMUSG00000031792	Usb1	AA960436	U6 snRNA biogenesis 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-97077162-4	chr7	97077076	97077276	+	988.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4575.0	NM_001162477	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21221136-2	chr9	21221036	21221236	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18196.0	NM_016679	50868.0	Mm.248266	NM_016679	ENSMUSG00000003308	Keap1	INRF2|mKIAA0132	kelch-like ECH-associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-31782952-2	chr2	31782852	31783052	+	682.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001283046, intron 4 of 11)	intron (NM_001283046, intron 4 of 11)	22779.0	NM_001283045	11350.0	Mm.1318	NM_009594	ENSMUSG00000026842	Abl1	AI325092|Abl|E430008G22Rik|c-Abl	c-abl oncogene 1, non-receptor tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-97379978-4	chr15	97379854	97380054	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172293, intron 5 of 5)	intron (NM_172293, intron 5 of 5)	-132667.0	NM_001164602	105827.0	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-37033512-3	chr14	37033456	37033656	+	764.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15458.0	NM_001301694	57811.0	Mm.20460	NM_021340	ENSMUSG00000021804	Rgr	-	retinal G protein coupled receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133519261-5	chr4	133519097	133519297	+	724.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083916, intron 1 of 3)	CpG	234.0	NM_133707	69073.0	Mm.299081	NM_133707	ENSMUSG00000037600	Kdf1	1810019J16Rik	keratinocyte differentiation factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-164074080-4	chr2	164073979	164074179	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021420)	promoter-TSS (NM_021420)	-99.0	NM_021420	58231.0	Mm.234472	NM_021420	ENSMUSG00000018209	Stk4	AI447339|AU020804|Kas-2|Mst1|Ysk3	serine/threonine kinase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-61052162-3	chr19	61052047	61052247	+	909.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018869, intron 4 of 15)	intron (NM_018869, intron 4 of 15)	88693.0	NR_131956	414758.0	Mm.100056	NM_001001737	ENSMUSG00000074733	Zfp950	5830428H23Rik|AU016073|BC055757|Gm34518|Zfp826|mszf84	zinc finger protein 950	protein-coding	1.16219881373094	0.870518639553005	1.77843784564626	1.61711698514756	1.01187310825699	0.874267443319229	2.06481203693181	1.3805356868395	0.0824733776542676	0.950055038035156	0.998431161219273
Merged-chr12-85670296-4	chr12	85670197	85670397	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16423.0	NM_016767	53314.0	Mm.6672	NM_016767	ENSMUSG00000034266	Batf	B-ATF|SFA-2	basic leucine zipper transcription factor, ATF-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-158194970-2	chr2	158194870	158195070	+	833.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_177657)	TTS (NM_177657)	2962.0	NR_036606	73399.0	Mm.416861	NR_036606	ENSMUSG00000078957	1700060C20Rik	-	RIKEN cDNA 1700060C20 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-182953859-4	chr1	182953750	182953950	+	994.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016928)	promoter-TSS (NM_016928)	-938.0	NM_016928	53791.0	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-68691363-3	chr3	68691282	68691482	+	850.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008351)	promoter-TSS (NM_008351)	-42.0	NM_008351	16159.0	Mm.103783	NM_008351	ENSMUSG00000027776	Il12a	IL-12p35|Il-12a|Ll12a|p35	interleukin 12a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-79154190-3	chr3	79154090	79154290	+	962.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-8315.0	NM_001099624	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	1.82030713270627	1.02369550407425	1.00109293371606	0.983103723907959	1.73333280668607	1.83268090655608	2.37296739046862	2.13125680008296	2.41052622521341	0.0498309352506121	0.325455958593809
Merged-chr10-58523958-2	chr10	58523858	58524058	+	704.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162956, intron 6 of 15)	L1MB8|LINE|L1	26021.0	NM_001162956	76138.0	Mm.211744	NM_001162956	ENSMUSG00000038010	Ccdc138	6230424H07Rik|BC042726	coiled-coil domain containing 138	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-5339484-3	chr6	5339365	5339565	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3_Mus|LINE|L1	-41092.0	NM_183308	330260.0	Mm.126984	NM_183308	ENSMUSG00000032667	Pon2	6330405I24Rik|AI481612	paraoxonase 2	protein-coding	7.34701893193191	7.28211456574527	6.71492703087595	6.60978200141955	3.37237378849216	1.999790354629	3.12500882633863	1.78020160717801	-5.27818356863757	8.09985049239386e-09	1.01939167350778e-06
Merged-chr15-99074961-4	chr15	99074841	99075041	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030159)	promoter-TSS (NM_030159)	-32.0	NM_001162506	78733.0	Mm.124905	NM_030159	ENSMUSG00000032783	Troap	AW476063|E130301L11Rik|tastin	trophinin associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-106765737-2	chr14	106765637	106765837	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-279217.0	NR_045938	73631.0	Mm.48862	NR_045938	ENSMUSG00000099794	1700128A07Rik	-	RIKEN cDNA 1700128A07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117283506-2	chr10	117283406	117283606	+	801.083374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1234.0	NM_017372	17105.0	Mm.45436	NM_017372	ENSMUSG00000069516	Lyz2	AI326280|Lys|Lysm|Lyzf2|Lyzs|Lzm|Lzm-s1|Lzp	lysozyme 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-117438932-4	chr3	117438814	117439014	+	813.354187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-78038.0	NM_177664	229791.0	Mm.140138	NM_177664	ENSMUSG00000044667	Plppr4	A330086D10|D3Bwg0562e|Lppr4|PRG-1|mKIAA0455	phospholipid phosphatase related 4	protein-coding	4.24579750197106	4.93862339725802	3.70023356969891	4.0669987578593	4.14863597018716	3.57629985537244	3.7294837582784	3.23566258862058	-0.810363725553277	0.0970535840764949	0.483974946020596
Merged-chr12-52541492-3	chr12	52541384	52541584	+	866.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009706, intron 1 of 5)	intron (NM_009706, intron 1 of 5)	25407.0	NM_009706	11855.0	Mm.35059	NM_009706	ENSMUSG00000035133	Arhgap5	p190-B|p190B	Rho GTPase activating protein 5	protein-coding	2.59580851189871	3.76100014444448	2.57425874523512	2.62503291689977	2.8072175696012	2.68479071408511	2.45048733161795	3.03592270085278	-0.433887012473486	0.541954947010686	0.954866069207078
Merged-chr5-44049532-4	chr5	44049436	44049636	+	992.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163578, intron 3 of 22)	intron (NM_001163578, intron 3 of 22)	45232.0	NM_001163581	19126.0	Mm.6250	NM_008935	ENSMUSG00000029086	Prom1	4932416E19Rik|AC133|CD133|Prom|Prom-1|Proml1	prominin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141210690-1	chr4	141210590	141210790	+	1000.0	f0_c57.idr	Intergenic	RSINE1|SINE|B4	-3266.0	NM_001081174	76166.0	Mm.271064	NM_001081174	ENSMUSG00000073733	Rsg1	6330545A04Rik|Gm723|b2b2804Clo|b2b2827Clo	REM2 and RAB-like small GTPase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-29528755-2	chr6	29528655	29528855	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252382)	promoter-TSS (NM_001252382)	-527.0	NM_001252382	27056.0	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-145743227-3	chr3	145743128	145743328	+	970.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15464.0	NM_026993	69219.0	Mm.234247	NM_026993	ENSMUSG00000028194	Ddah1	2410006N07Rik|2510015N06Rik|AI987801|AW050362	dimethylarginine dimethylaminohydrolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-54934575-3	chr6	54934434	54934634	+	804.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001171007, intron 7 of 11)	intron (NM_001171007, intron 7 of 11)	37127.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-13104460-2	chr15	13104360	13104560	+	550.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007666, intron 1 of 11)	RSINE1|SINE|B4	69215.0	NM_007666	12563.0	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-87870741-4	chr4	87870655	87870855	+	916.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027326, intron 4 of 10)	intron (NM_027326, intron 4 of 10)	-64432.0	NM_029931	70122.0	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-59203809-1	chr11	59203709	59203909	+	566.0	f1_c57bl6.idr	intron (NM_001302334, intron 1 of 3)	intron (NM_001302334, intron 1 of 3)	1323.0	NM_001302336	67212.0	Mm.282694	NM_026035	ENSMUSG00000036860	Mrpl55	2810038N09Rik|L55mt|MRP-L55	mitochondrial ribosomal protein L55	protein-coding	-1.18378942727406	-1.15669478905697	-0.457913181653105	-1.17806440097404	-1.18323730008524	-1.15415234459186	-1.16577117532349	-1.17633933179771	-2.81844548480871	0.412768592413622	1
Merged-chr14-55747612-2	chr14	55747512	55747712	+	791.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_026403, intron 2 of 9)	Lx5c|LINE|L1	1919.0	NM_026403	67842.0	Mm.180338	NM_026403	ENSMUSG00000019297	Nop9	2610027L16Rik	NOP9 nucleolar protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80964308-2	chr10	80964208	80964408	+	851.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038655, intron 2 of 3)	intron (NM_001038655, intron 2 of 3)	34217.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5218188-2	chr17	5218088	5218288	+	858.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 4 of 19)	intron (NM_001085355, intron 4 of 19)	200579.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102443788-4	chr12	102443648	102443848	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3935.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-74678012-2	chr1	74677912	74678112	+	652.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001014974, intron 2 of 19)	intron (NM_001014974, intron 2 of 19)	16258.0	NM_001014974	67534.0	Mm.260714	NM_001014974	ENSMUSG00000033257	Ttll4	4632407P03Rik|AI451681|mKIAA0173	tubulin tyrosine ligase-like family, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-85342121-1	chr9	85342021	85342221	+	731.0	f0_balb.idr	Intergenic	Intergenic	-14971.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	1.0212189097043	0.552816089407904	0.544039885393292	0.537238868648388	1.28519177987937	0.759370458551674	1.14662183128355	0.987926983357443	2.06271696201999	0.209349535652171	1
Merged-chr12-109033737-2	chr12	109033637	109033837	+	574.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_001163175, exon 7 of 7)	exon (NM_001163175, exon 7 of 7)	34480.0	NM_001163175	380785.0	Mm.342085	NM_001163175	ENSMUSG00000040867	Begain	BM948371|Gm897	brain-enriched guanylate kinase-associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-84173183-2	chr12	84173083	84173283	+	947.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001163502, exon 2 of 13)	exon (NM_001163502, exon 2 of 13)	20832.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114566604-2	chr11	114566504	114566704	+	642.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D11|SINE|Alu	-101939.0	NM_023372	67671.0	Mm.238817	NM_023372	ENSMUSG00000057322	Rpl38	0610025G13Rik|Rbt|Ts|Tss	ribosomal protein L38	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-103371174-2	chr11	103371074	103371274	+	949.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_183034, intron 8 of 11)	MIRb|SINE|MIR	-7482.0	NM_001205236	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	0.672168419620534	0.81219098167957	1.08275865451501	0.29023124846227	0.68122831689137	0.304867351106552	0.297518966914762	0.291223354725499	-2.216227917756	0.247160700234876	1
Merged-chr4-134273558-1	chr4	134273458	134273658	+	865.0	f0_balb.idr	Intergenic	Intergenic	13695.0	NM_001163794	230809.0	Mm.22778	NM_146156	ENSMUSG00000050890	Pdik1l	BC027088|stk35l2	PDLIM1 interacting kinase 1 like	protein-coding	1.84777743367385	1.37081478728795	2.83799104205925	1.29849107489686	2.63279123416882	2.66660789291049	2.6779134450529	3.05965490857353	1.6002694994426	0.0861421582744598	0.451062095567487
Merged-chr3-129472098-3	chr3	129471990	129472190	+	734.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38417.0	NR_033594	435755.0	Mm.430561	NR_033594	ENSMUSG00000105712	Pou5f1-rs4	EG435755|Gm5712|Oct4P1|Otf3-rs4|Otf3d	POU domain, class 5, transcription factor 1, related sequence 4	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-114778301-3	chr9	114778222	114778422	+	690.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252479, intron 1 of 3)	L1MB8|LINE|L1	3671.0	NM_133978	102545.0	Mm.35600	NM_133978	ENSMUSG00000032436	Cmtm7	AI481279|Cklfsf7|LNV	CKLF-like MARVEL transmembrane domain containing 7	protein-coding	1.61074017437353	1.80195466901591	2.31253549567438	2.05741204706743	1.30904554629577	1.1816503807686	1.898245891267	2.33924647977502	-0.520280064726496	0.626782032176906	0.980912176761026
Merged-chr9-44566204-2	chr9	44566104	44566304	+	620.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4|SINE|ID	-38688.0	NM_001110826	13209.0	Mm.267061	NM_007841	ENSMUSG00000032097	Ddx6	1110001P04Rik|C430015D01Rik|E230023J21Rik|HLR2|mRCK/P54|p54|rck	DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	protein-coding	-1.58994551673671	-1.55912852307891	-1.56844783632235	-1.57610299769523	-1.18549093183599	-1.55710898902261	-1.56633814807757	-1.57473272746952	1.78703309985663	0.610309988231842	1
Merged-chr8-71679188-2	chr8	71679088	71679288	+	635.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001190830, intron 4 of 23)	intron (NM_001190830, intron 4 of 23)	2805.0	NM_010589	16453.0	Mm.249645	NM_010589	ENSMUSG00000031805	Jak3	fae|wil	Janus kinase 3	protein-coding	0.999510256157066	0.51245874026629	1.32083190378708	0.495695205346083	0.646952523108908	0.51457230241872	1.23740767221306	0.832780884320214	-0.222910656680944	0.892325296836737	1
Merged-chr7-138845746-4	chr7	138845611	138845811	+	951.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026391)	promoter-TSS (NM_026391)	556.0	NM_001045483	69546.0	Mm.31598	NM_027115	ENSMUSG00000041775	Mapk1ip1	2310009E07Rik|AU043776|MISS	mitogen-activated protein kinase 1 interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-121276751-2	chr9	121276651	121276851	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177589, intron 1 of 36)	intron (NM_177589, intron 1 of 36)	421.0	NM_177589	209012.0	Mm.371804	NM_177589	ENSMUSG00000040936	Ulk4	4932415A06Rik|A730098P15	unc-51-like kinase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129586292-4	chr2	129586195	129586395	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6544.0	NM_001291020	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	4.86122557608972	4.19024698102573	6.46922305134752	6.06575372953885	5.54955534838776	5.43314687128308	6.46354604871846	6.32783479003327	0.379776971290866	0.537639296462265	0.953963493057627
Merged-chr11-73018925-4	chr11	73018821	73019021	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018883)	promoter-TSS (NM_018883)	-80.0	NR_152202	100043309.0	Mm.340872	NR_152202	ENSMUSG00000086943	4732414G09Rik	-	RIKEN cDNA 4732414G09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26628914-2	chr17	26628814	26629014	+	780.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_026170, intron 4 of 9)	MIR|SINE|MIR	-47482.0	NM_025272	11974.0	Mm.22602	NM_025272	ENSMUSG00000015575	Atp6v0e	Atp6k|Atp6v0e1|M9.2	ATPase, H+ transporting, lysosomal V0 subunit E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94521923-4	chr10	94521835	94522035	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172051, intron 1 of 3)	intron (NM_172051, intron 1 of 3)	7078.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-19891890-4	chr5	19891794	19891994	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170746, intron 2 of 22)	L2a|LINE|L2	-15624.0	NM_001170745	50791.0	Mm.332231	NM_015823	ENSMUSG00000040003	Magi2	AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705	membrane associated guanylate kinase, WW and PDZ domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-124707556-3	chr2	124707465	124707665	+	891.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53984.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-79932041-1	chr15	79931941	79932141	+	1000.0	f1_c57bl6.idr	intron (NM_144811, intron 1 of 6)	intron (NM_144811, intron 1 of 6)	605.0	NM_144811	52609.0	Mm.323442	NM_144811	ENSMUSG00000053411	Cbx7	1600014J01Rik|AI851678|D15Ertd417e	chromobox 7	protein-coding	-0.215903462454431	-0.200304120594814	-0.0215142511385086	0.230686706272105	-0.214926494386915	-0.199156278897386	-0.204277393362429	0.620903112766624	0.799811135795112	0.735951436838038	1
Merged-chr1-125468143-4	chr1	125468015	125468215	+	932.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32388.0	NM_001205385	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53270125-4	chr4	53269964	53270164	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033139, intron 1 of 1)	RMER1B|Other|Other	168.0	NR_033139	381524.0	Mm.23351	NM_001033454	ENSMUSG00000086712	AI427809	Gm1659	expressed sequence AI427809	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-117716539-1	chr14	117716439	117716639	+	599.0	f0_c57.idr	intron (NM_011821, intron 4 of 8)	L1_Mur2|LINE|L1	237308.0	NR_105747	102465148.0		NR_105747	ENSMUSG00000098648	Mir6239	Gm28025|mmu-mir-6239	microRNA 6239	ncRNA	2.16026424184494	2.92370889306675	1.93473706590087	3.11829285237998	1.93816362154458	1.31306746532967	2.10936992618493	1.71130627931881	-1.92824945511759	0.0377404460908123	0.276116293022075
Merged-chr18-4324664-2	chr18	4324564	4324764	+	587.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28289.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-75908231-1	chr18	75908131	75908331	+	1000.0	f1_c57bl6.idr	intron (NM_145356, intron 2 of 4)	intron (NM_145356, intron 2 of 4)	88053.0	NM_145356	207259.0	Mm.159332	NM_145356	ENSMUSG00000044646	Zbtb7c	B230208J24Rik|Kr-pok|Zbtb36	zinc finger and BTB domain containing 7C	protein-coding	0.865848046651856	0.66145446061402	0.164785276778527	0.16009405978061	0.425323793323863	0.172230130280995	0.497493326993689	0.16091385104991	-1.25226682795173	0.532200434651161	1
Merged-chr9-51009172-4	chr9	51009079	51009279	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178710)	promoter-TSS (NM_178710)	-106.0	NM_178710	235344.0	Mm.104932	NM_178710	ENSMUSG00000037112	Sik2	G630080D20Rik|Snf1lk2	salt inducible kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-131882414-2	chr7	131882314	131882514	+	853.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-84046.0	NM_173410	233919.0	Mm.208740	NM_173410	ENSMUSG00000040125	Gpr26	9630036A11Rik|A730021D22	G protein-coupled receptor 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-9849979-4	chr3	9849878	9850078	+	974.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16299.0	NM_001195031	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	1.98987475995328	2.68927248803946	2.28158515988963	2.43343407050305	1.87136090779474	2.60898076142234	1.6419984653126	2.4458387960987	-0.385939590835998	0.657392562925833	0.988704682801132
Merged-chr5-20877878-2	chr5	20877778	20877978	+	609.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172992, intron 1 of 17)	intron (NM_172992, intron 1 of 17)	4246.0	NM_172992	68770.0	Mm.86410	NM_172992	ENSMUSG00000039987	Phtf2	1110054G21Rik|9530062N20Rik|AI447096|C77923	putative homeodomain transcription factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-115687100-3	chr3	115687025	115687225	+	878.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27930.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-52103032-4	chr3	52102924	52103124	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 1 of 4)	CpG	1982.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-89643809-6	chr1	89643692	89643892	+	810.055542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037136, intron 6 of 16)	intron (NM_001037136, intron 6 of 16)	40100.0	NR_015540	74403.0	Mm.444291	NR_015540		4933400F21Rik	1700091C04Rik|4930565K10Rik	RIKEN cDNA 4933400F21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-44928731-2	chr2	44928631	44928831	+	635.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-67109.0	NM_172662	227835.0	Mm.314312	NM_172662	ENSMUSG00000036890	Gtdc1	E330008O22Rik	glycosyltransferase-like domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-71129123-4	chr9	71129014	71129214	+	800.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_073483, intron 4 of 6)	B3|SINE|B2	33519.0	NM_001271843	64008.0	Mm.449427	NM_022026	ENSMUSG00000032204	Aqp9	1700020I22Rik|AI266899|AQP-9	aquaporin 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-40548020-4	chr12	40547914	40548114	+	924.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	101961.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-108405416-3	chr6	108405324	108405524	+	915.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010585, exon 34 of 62)	exon (NM_010585, exon 34 of 62)	-84319.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-155093367-4	chr3	155093258	155093458	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028938)	promoter-TSS (NM_028938)	20.0	NM_029330	75540.0	Mm.35218	NM_029330	ENSMUSG00000053870	Fpgt	1700016E03Rik	fucose-1-phosphate guanylyltransferase	protein-coding	6.81169971889796	6.49795132809724	6.73828356987492	6.37041086520259	5.11040215855765	3.92668162175526	4.94479636793542	4.27168214667647	-2.18356444993043	2.54319455779251e-14	1.17358647324594e-11
Merged-chr13-58521194-3	chr13	58521122	58521322	+	779.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	89655.0	NM_022317	114304.0	Mm.18188	NM_022317	ENSMUSG00000021553	Slc28a3	Cnt3	solute carrier family 28 (sodium-coupled nucleoside transporter), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-100493539-2	chr13	100493439	100493639	+	836.833374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022011)	promoter-TSS (NM_022011)	-930.0	NM_022011	23894.0	Mm.272533	NM_022011	ENSMUSG00000021639	Gtf2h2	44kDa|BTF2 p44|BTF2-p44|Btf2p44|p44	general transcription factor II H, polypeptide 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-109261279-2	chr13	109261179	109261379	+	646.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_011056, intron 3 of 16)	intron (NM_011056, intron 3 of 16)	-63465.0	NR_030644	100124489.0		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-8171898-4	chr14	8171817	8172017	+	881.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024221, intron 2 of 9)	intron (NM_024221, intron 2 of 9)	1075.0	NM_024221	68263.0	Mm.301527	NM_024221	ENSMUSG00000021748	Pdhb	2610103L06Rik|AL024199|C81408	pyruvate dehydrogenase (lipoamide) beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-88110062-2	chr17	88109962	88110162	+	721.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-15450.0	NM_001190356	225058.0	Mm.312053	NM_001190356		Gm4832	EG225058	predicted gene 4832	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-41614892-2	chr3	41614792	41614992	+	615.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172303, exon 11 of 11)	3' UTR (NM_172303, exon 11 of 11)	50012.0	NM_001130186	269424.0	Mm.286285	NM_172303	ENSMUSG00000025764	Jade1	AU041499|D530048A03Rik|Phf17|mKIAA1807	jade family PHD finger 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116623319-4	chr11	116623200	116623400	+	841.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172572, intron 1 of 18)	intron (NM_172572, intron 1 of 18)	952.0	NM_001167680	217344.0	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165977015-4	chr2	165976932	165977132	+	875.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15605.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	3.29930621975615	2.83887031184654	2.74595479716627	2.87959898637987	2.84726539379951	2.85918660985505	2.76686576929203	2.98596265177464	-0.186589685118076	0.773905136488259	0.998431161219273
Merged-chr15-98089967-4	chr15	98089875	98090075	+	921.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144851, intron 1 of 17)	B2_Mm2|SINE|B2	-2614.0	NM_001163488	18642.0	Mm.272582	NM_021514	ENSMUSG00000033065	Pfkm	AI131669|ATP-PFK|PFK-A|PFK-M|Pfk-4|Pfk4|Pfka|Pfkx	phosphofructokinase, muscle	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-118012434-4	chr2	118012322	118012522	+	913.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_126479, intron 8 of 9)	Lx9|LINE|L1	98780.0	NR_126479	329496.0	Mm.235844	NR_126479	ENSMUSG00000087203	Gm13986	C230060E24	predicted gene 13986	ncRNA	2.2610419846795	1.77297118546193	2.10045174176083	1.07846224483442	2.12552987596833	2.40429787181362	1.10415230309931	1.31571333617024	-0.0567528695277808	0.96103367036645	0.998431161219273
Merged-chr2-158156669-4	chr2	158156564	158156764	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10272.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-65075538-4	chr12	65075452	65075652	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178912)	promoter-TSS (NM_178912)	-54.0	NM_178912	104806.0	Mm.374847	NM_178912	ENSMUSG00000055884	Fancm	AI427100|C730036B14Rik|D12Ertd364e	Fanconi anemia, complementation group M	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-34188761-1	chr8	34188661	34188861	+	589.0	f0_c57.idr	Intergenic	Intergenic	-22049.0	NR_105820	102465211.0		NR_105820	ENSMUSG00000098785	Mir6395	Gm27561|mmu-mir-6395	microRNA 6395	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133671158-6	chr4	133671030	133671230	+	738.450012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356466, intron 1 of 3)	intron (NM_001356466, intron 1 of 3)	1517.0	NM_001145955	230801.0	Mm.217004	NM_178698	ENSMUSG00000043257	Pigv	B330013B03|D430024F16Rik	phosphatidylinositol glycan anchor biosynthesis, class V	protein-coding	-0.109960195225737	0.136555478459165	-0.468201191793979	-0.310462595598299	-0.475109101881319	-0.463635905583767	-0.467380587039302	-0.470567579136024	-3.43702532814284	0.172618189338217	1
Merged-chr16-93084512-4	chr16	93084424	93084624	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-258450.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	5.09910606503332	3.88685950835386	3.99755731388772	4.61257247357225	5.40211845156534	4.82427938657605	4.58114585856287	4.44902458577721	0.453757827090202	0.275799591623592	0.77982362793126
Merged-chr3-138197709-1	chr3	138197609	138197809	+	540.0	f1_balb.idr	Intergenic	Intergenic	-10996.0	NM_001163386	67741.0	Mm.383221	NM_001163385	ENSMUSG00000012042	4930579F01Rik	-	RIKEN cDNA 4930579F01 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-34839422-4	chr1	34839314	34839514	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160236, intron 1 of 6)	intron (NM_001160236, intron 1 of 6)	3636.0	NM_174997	214469.0	Mm.120151	NM_174997	ENSMUSG00000037503	Fam168b	Mani|mKIAA4042	family with sequence similarity 168, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-60784294-2	chr11	60784194	60784394	+	637.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001085440, exon 2 of 2)	3' UTR (NM_001085440, exon 2 of 2)	6769.0	NM_175491	237782.0	Mm.57726	NM_175491	ENSMUSG00000049323	Smcr8	2310076G09Rik|AI642055|D030073L15Rik	Smith-Magenis syndrome chromosome region, candidate 8 homolog (human)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-50962489-1	chr1	50962389	50962589	+	755.333313	f0_balb.idr	intron (NM_019790, intron 4 of 9)	intron (NM_019790, intron 4 of 9)	34966.0	NM_019790	56363.0	Mm.245154	NM_019790	ENSMUSG00000026109	Tmeff2	4832418D20Rik|7630402F16Rik|TR-2	transmembrane protein with EGF-like and two follistatin-like domains 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-98837651-2	chr15	98837551	98837751	+	737.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033276, intron 49 of 54)	intron (NM_001033276, intron 49 of 54)	-6143.0	NM_016781	19082.0	Mm.6670	NM_016781	ENSMUSG00000067713	Prkag1	AA571379|BB036179|Prkaac	protein kinase, AMP-activated, gamma 1 non-catalytic subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-35376635-3	chr15	35376516	35376716	+	862.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177151, intron 2 of 61)	URR1A|DNA|hAT-Charlie	5070.0	NM_177151	666173.0	Mm.309250	NM_177151	ENSMUSG00000037646	Vps13b	1810042B05Rik|2310042E16Rik|4732488H20|C330002D13Rik|C87206|Coh1|D230005K13|mKIAA0532|mKIAA5032	vacuolar protein sorting 13B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-60901669-4	chr2	60901615	60901815	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	-20277.0	NM_001141931	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-151997389-2	chr4	151997289	151997489	+	749.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1210.0	NM_172705	230936.0	Mm.25582	NM_172705	ENSMUSG00000047777	Phf13	BC029632|Phf5|SPOC1	PHD finger protein 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-111402039-1	chr1	111401939	111402139	+	540.0	f1_c57bl6.idr	Intergenic	Intergenic	-424446.0	NM_001081386	227485.0	Mm.322070	NM_001081386	ENSMUSG00000047216	Cdh19	-	cadherin 19, type 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117294125-2	chr8	117294045	117294245	+	545.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	37126.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5568985-4	chr19	5568914	5569114	+	981.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001033448, exon 2 of 2)	exon (NM_001033448, exon 2 of 2)	990.0	NM_001033448	381201.0	Mm.441906	NM_001033448	ENSMUSG00000049562	Ap5b1	Gm962|beta-5	adaptor-related protein complex 5, beta 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-120830800-4	chr7	120830695	120830895	+	980.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12036.0	NM_007908	13631.0	Mm.25997	NM_007908	ENSMUSG00000035064	Eef2k	C86191|eEF-2K	eukaryotic elongation factor-2 kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-126851505-2	chr6	126851388	126851588	+	777.783325	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1610.0	NM_009650	11642.0	Mm.87748	NM_009650	ENSMUSG00000030344	Akap3	Prka3	A kinase (PRKA) anchor protein 3	protein-coding	1.61132568979884	1.09488578178953	1.05876422536695	1.02941854883646	2.41545140562494	2.74277739072886	1.95581928141635	3.17931376222028	4.00761873816809	0.000766660574852509	0.0156612830483775
Merged-chr5-117424251-3	chr5	117424160	117424360	+	698.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001312914, intron 1 of 19)	intron (NM_001312914, intron 1 of 19)	10258.0	NM_001312914	333050.0	Mm.437947	NM_001034873	ENSMUSG00000061578	Ksr2	-	kinase suppressor of ras 2	protein-coding	1.79439309389831	0.988587442371309	1.18506614447018	1.59623953452044	1.4077806457558	2.05140725075664	1.65847268509116	1.16365398182945	0.588661672518818	0.623568296308734	0.980259659844413
Merged-chr1-191965244-4	chr1	191965134	191965334	+	922.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12136.0	NM_001177900	74023.0	Mm.274393	NM_023727	ENSMUSG00000049353	Rd3	3322402L07Rik|rd-3|rd3	retinal degeneration 3	protein-coding	1.1201493654137	1.12406751027446	0.711002541267792	0.89191896582657	1.00449494420608	0.949716760341163	1.83602590972351	1.1949522729349	1.43045917960675	0.291762115218547	0.796128548904676
Merged-chr4-45452690-4	chr4	45452542	45452742	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033306, intron 3 of 5)	intron (NM_001033306, intron 3 of 5)	-43876.0	NM_001009949	230125.0	Mm.260210	NM_001009949	ENSMUSG00000045973	Slc25a51	9130208E07Rik|D130005A03Rik|Gm138|Mcart1	solute carrier family 25, member 51	protein-coding	4.29996644760671	4.207900805439	5.38908019704219	4.31884560417379	4.78877959815199	4.55831081981775	4.47037753563349	4.53830861867922	-0.067425624833474	0.867128306374519	0.998431161219273
Merged-chr11-60027433-2	chr11	60027333	60027533	+	845.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290011, intron 2 of 6)	C-rich|Low_complexity|Low_complexity	9572.0	NM_008819	18618.0	Mm.2731	NM_008819	ENSMUSG00000000301	Pemt	PEAMT|PEMT2|PLMT|Pempt|Pempt2	phosphatidylethanolamine N-methyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91000735-2	chr16	91000635	91000835	+	729.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001045515, intron 2 of 32)	B1F|SINE|Alu	10360.0	NM_001045515	104015.0	Mm.187079	NM_001045515	ENSMUSG00000022973	Synj1	A930006D20Rik|AA675315|mKIAA0910	synaptojanin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-47171358-4	chr11	47171262	47171462	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011891, intron 3 of 7)	intron (NM_011891, intron 3 of 7)	207940.0	NM_011891	24052.0	Mm.338890	NM_011891	ENSMUSG00000020354	Sgcd	35kDa|delta-SG	sarcoglycan, delta (dystrophin-associated glycoprotein)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-110627967-2	chr7	110627867	110628067	+	636.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009627, intron 1 of 3)	intron (NM_009627, intron 1 of 3)	310.0	NM_009627	11535.0	Mm.1408	NM_009627	ENSMUSG00000030790	Adm	AM	adrenomedullin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-7870580-3	chr17	7870405	7870605	+	734.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55495.0	NM_145968	72536.0	Mm.119680	NM_145968	ENSMUSG00000033450	Tagap	2610315E15Rik|TRD|Tcd-1|Tcd1|Tcd1a|tcs-1|tcs1	T cell activation Rho GTPase activating protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-21751391-4	chr14	21751269	21751469	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359953)	promoter-TSS (NM_001359953)	-183.0	NM_001359953	67630.0	Mm.102765	NM_026283	ENSMUSG00000021770	Samd8	1110053F04Rik|1700010P07Rik|SMSr	sterile alpha motif domain containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-121160458-2	chr7	121160358	121160558	+	925.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_139310, exon 28 of 29)	exon (NM_139310, exon 28 of 29)	77020.0	NM_139310	246190.0	Mm.221073	NM_139310	ENSMUSG00000034990	Otoa	-	otoancorin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-51529851-4	chr1	51529757	51529957	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151621, intron 3 of 3)	intron (NR_151621, intron 3 of 3)	-51458.0	NM_001310549	109019.0	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-80899814-2	chr17	80899714	80899914	+	606.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_131127, intron 1 of 5)	intron (NR_131127, intron 1 of 5)	3021.0	NR_131127	320784.0	Mm.474182	NR_131127	ENSMUSG00000112121	C230072F16Rik	-	RIKEN cDNA C230072F16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-51870370-2	chr12	51870273	51870473	+	826.916626	f0_balb.idr|f1_balb.idr	Intergenic	RMER16_Mm|LTR|ERVK	-40837.0	NM_144788	207304.0	Mm.249391	NM_144788	ENSMUSG00000035247	Hectd1	A630086P08Rik|AI844876|b2b327Clo|opm	HECT domain E3 ubiquitin protein ligase 1	protein-coding	1.95693467275938	2.62951909587045	2.94948478399115	2.73861508378797	3.99684687331241	2.95391929668616	4.12510285131252	3.80922686758515	1.93889629477013	0.00212632469785596	0.0349372646729187
Merged-chr5-96867487-2	chr5	96867387	96867587	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER2|LTR|ERV1	-53785.0	NR_131152	666266.0	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-58611969-4	chr6	58611844	58612044	+	925.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011920, intron 1 of 15)	RMER17C2|LTR|ERVK	15272.0	NM_011920	26357.0	Mm.333096	NM_011920	ENSMUSG00000029802	Abcg2	ABC15|ABCP|AI428558|BCRP|Bcrp1|MXR|MXR1	ATP binding cassette subfamily G member 2 (Junior blood group)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-64192557-2	chr7	64192457	64192657	+	629.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_018752, intron 1 of 13)	intron (NM_018752, intron 1 of 13)	7098.0	NM_018752	17364.0	Mm.38875	NM_018752	ENSMUSG00000030523	Trpm1	4732499L03Rik|AI606771|Ltrpc1|Mlsn1	transient receptor potential cation channel, subfamily M, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141762383-3	chr4	141762299	141762499	+	718.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172338, exon 15 of 15)	3' UTR (NM_172338, exon 15 of 15)	15724.0	NM_001081408	75986.0	Mm.30032	NM_001081408	ENSMUSG00000040706	Agmat	5033405N08Rik	agmatine ureohydrolase (agmatinase)	protein-coding	1.27717905028034	0.738073358727131	0.901705674915895	1.57788339684024	0.982281556873757	0.739986771445649	0.731472439661312	1.52209852920845	-0.578639004639457	0.706755548007913	0.998431161219273
Merged-chr19-59037683-3	chr19	59037573	59037773	+	593.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114312, intron 5 of 16)	intron (NM_001114312, intron 5 of 16)	38396.0	NM_175172	71653.0	Mm.37338	NM_175172	ENSMUSG00000041362	Shtn1	4930506M07Rik|Shootin1|mKIAA1598	shootin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-91019112-2	chr1	91019012	91019212	+	771.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111312, intron 1 of 12)	intron (NM_001111312, intron 1 of 12)	20385.0	NM_001111312	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-51279793-2	chr3	51279693	51279893	+	563.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023502, intron 4 of 9)	intron (NM_023502, intron 4 of 9)	-2279.0	NM_001291062	69257.0	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-25837266-2	chr3	25837166	25837366	+	632.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357095, intron 4 of 6)	Lx|LINE|L1	316720.0	NM_001163387	192167.0	Mm.316080	NM_138666	ENSMUSG00000063887	Nlgn1	6330415N05Rik|BB179718|NL1|Nlg1|mKIAA1070	neuroligin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-98969103-2	chr7	98969003	98969203	+	607.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 12 of 14)	intron (NM_178635, intron 12 of 14)	130258.0	NM_001285795	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-38799342-2	chr16	38799203	38799403	+	797.5	f0_balb.idr|f1_balb.idr	intron (NM_178924, intron 1 of 7)	intron (NM_178924, intron 1 of 7)	900.0	NM_178924	22268.0	Mm.130793	NM_178924	ENSMUSG00000049436	Upk1b	AI413235|Tspan20|UPIb|Upk1	uroplakin 1B	protein-coding	0.961372887095661	1.10001847021652	1.05768867692226	1.31501884941631	2.97396137977499	2.92790246995297	3.39759430828798	2.08686258615063	5.48993451839717	1.15221039267507e-05	0.000521013327562143
Merged-chr2-90635450-2	chr2	90635350	90635550	+	705.875	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41765.0	NM_021512	59015.0	Mm.24532	NM_021512	ENSMUSG00000051329	Nup160	160kDa|2810011M03Rik|AA414952|AU020188|Gtl-13|Gtl1-13|Gtl13|mKIAA0197	nucleoporin 160	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-79143968-4	chr8	79143863	79144063	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001294279, intron 8 of 14)	intron (NM_001294279, intron 8 of 14)	104620.0	NM_026315	67687.0	Mm.178707	NM_026315	ENSMUSG00000031682	1700011L22Rik	-	RIKEN cDNA 1700011L22 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-75024983-4	chr14	75024881	75025081	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198642, intron 1 of 13)	intron (NM_198642, intron 1 of 13)	8954.0	NM_198642	271221.0	Mm.320280	NM_198642	ENSMUSG00000034959	Rubcnl	5031414D18Rik|Gm744|Gm911|Kiaa0226l	RUN and cysteine rich domain containing beclin 1 interacting protein like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135870696-4	chr5	135870592	135870792	+	875.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021403, intron 14 of 14)	URR1A|DNA|hAT-Charlie	-17227.0	NM_013560	15507.0	Mm.13849	NM_013560	ENSMUSG00000004951	Hspb1	27kDa|Hsp25	heat shock protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-71652870-2	chr16	71652770	71652970	+	884.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR31B_Mm|LTR|ERVK	402966.0	NR_040576	78221.0	Mm.399298	NR_040576		4930567J20Rik	-	RIKEN cDNA 4930567J20 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-115417422-2	chr8	115417322	115417522	+	710.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	289472.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-31179443-3	chr5	31179333	31179533	+	895.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027901, intron 1 of 18)	intron (NM_027901, intron 1 of 18)	711.0	NM_027901	71752.0	Mm.271923	NM_027901	ENSMUSG00000106864	Gtf3c2	1300004C11Rik|2610510G03Rik|AI225816|AU041069|TFIIIC110|mKIAA0011	general transcription factor IIIC, polypeptide 2, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-57637207-4	chr10	57637108	57637308	+	956.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039051, intron 1 of 4)	intron (NM_001039051, intron 1 of 4)	5227.0	NM_001039051	18768.0	Mm.262135	NM_008863	ENSMUSG00000019876	Pkib	Pkibeta|Prkacn2	protein kinase inhibitor beta, cAMP dependent, testis specific	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36505237-1	chr18	36505137	36505337	+	543.0	f1_c57bl6.idr	3' UTR (NM_010415, exon 6 of 6)	3' UTR (NM_010415, exon 6 of 6)	10568.0	NM_010415	15200.0	Mm.289681	NM_010415	ENSMUSG00000024486	Hbegf	AW047313|Dtr|Dts|Hegfl	heparin-binding EGF-like growth factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-84362549-3	chr4	84362453	84362653	+	834.472229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172870, intron 4 of 5)	intron (NM_172870, intron 4 of 5)	312533.0	NM_172870	242509.0	Mm.190774	NM_172870	ENSMUSG00000028487	Bnc2	5031434M05Rik|8430420F16Rik	basonuclin 2	protein-coding	0.868320434088767	0.503231271168901	0.678443150723881	0.929138854955536	0.632072556134479	1.25676053312624	0.974902108072818	0.489501718710406	0.642225125622296	0.684688284153332	1
Merged-chr11-32601064-2	chr11	32600964	32601164	+	704.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 10 of 18)	(TCTG)n|Simple_repeat|Simple_repeat	-41491.0	NM_001271348	103583.0	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-35576343-4	chr12	35576248	35576448	+	847.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41359.0	NM_001314027	11622.0	Mm.341377	NM_013464	ENSMUSG00000019256	Ahr	Ah|Ahh|Ahre|In|bHLHe76	aryl-hydrocarbon receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-103334542-2	chr15	103334442	103334642	+	659.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356627)	promoter-TSS (NM_001356627)	-204.0	NM_001356627	29813.0	Mm.14099	NM_013866	ENSMUSG00000000552	Zfp385a	Hzf|Zfp385|Znf385a	zinc finger protein 385A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-21775635-4	chr4	21775523	21775723	+	834.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290425)	promoter-TSS (NM_001290425)	-647.0	NM_001290425	77593.0	Mm.154306	NM_152825	ENSMUSG00000040455	Usp45	3110003C05Rik|4930550B20Rik|AI843191|Gcap7	ubiquitin specific petidase 45	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-59337648-2	chr2	59337548	59337748	+	691.333313	f1_balb.idr|f1_c57bl6.idr	exon (NM_026361, exon 13 of 22)	exon (NM_026361, exon 13 of 22)	49034.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-73006596-2	chr11	73006496	73006696	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008771, intron 1 of 11)	intron (NM_008771, intron 1 of 11)	7451.0	NM_008771	18436.0	Mm.25722	NM_008771	ENSMUSG00000020787	P2rx1	AI323649|BB122383|P2x|Pdcd3|RP-2	purinergic receptor P2X, ligand-gated ion channel, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114895169-2	chr11	114895069	114895269	+	725.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_170758, intron 3 of 6)	intron (NM_170758, intron 3 of 6)	5128.0	NM_170758	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152437787-2	chr1	152437687	152437887	+	554.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177756, intron 1 of 11)	RLTR10A|LTR|ERVK	37920.0	NM_177756	269132.0	Mm.23782	NM_177756	ENSMUSG00000032649	Colgalt2	AI427652|D730024P12|Glt25d2	collagen beta(1-O)galactosyltransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-29170186-4	chr6	29170096	29170296	+	750.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001101443, exon 5 of 5)	exon (NM_001101443, exon 5 of 5)	-5472.0	NM_133925	68272.0	Mm.40802	NM_026650	ENSMUSG00000029701	Rbm28	2810480G15Rik|AI503051	RNA binding motif protein 28	protein-coding	2.06437573838891	1.64856149908992	1.40070792874814	2.69503950204479	1.98822758914829	1.98816102999322	1.60797281693965	1.37394930184056	-0.799785576461477	0.436857364110892	0.908362185228875
Merged-chr5-135969106-2	chr5	135969006	135969206	+	583.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001160366, intron 2 of 10)	B3|SINE|B2	5370.0	NM_001160366	109267.0	Mm.332750	NM_001160366	ENSMUSG00000029699	Ssc4d	C330016E03Rik|S4D-SRCRB|SRCRB-S4D|Srcrb4d	scavenger receptor cysteine rich family, 4 domains	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-97676358-4	chr1	97676265	97676465	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M5|LINE|L1	-14347.0	NM_133825	52392.0	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-30447858-3	chr18	30447657	30447857	+	635.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	174892.0	NR_151699	225326.0	Mm.194127	NM_181414	ENSMUSG00000033628	Pik3c3	5330434F23Rik|Vps34	phosphatidylinositol 3-kinase catalytic subunit type 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3530279-2	chr4	3530179	3530379	+	700.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6811.0	NR_037306	100499523.0		NR_037306	ENSMUSG00000094253	Mir3471-2	mmu-mir-3471-2	microRNA 3471-2	ncRNA	0.981047446674809	1.24640026585005	0.611846055357095	1.15216798902379	0.876358361854535	0.622709625607884	0.798950432820321	1.15949951061918	-0.701862825942895	0.640254749945879	1
Merged-chr7-19332111-2	chr7	19332011	19332211	+	932.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-12960.0	NM_001127324	13870.0	Mm.280913	NM_007948	ENSMUSG00000003549	Ercc1	Ercc-1	excision repair cross-complementing rodent repair deficiency, complementation group 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-80227356-1	chr18	80227256	80227456	+	728.0	f1_balb.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	19746.0	NM_001136181	66255.0	Mm.272341	NM_001136181	ENSMUSG00000078963	Hsbp1l1	1810005K13Rik	heat shock factor binding protein 1-like 1	protein-coding	1.88229906450072	1.24126141043393	1.70598942622946	1.65466928735961	2.73990471234029	2.43524603541521	1.72027296290023	3.3719227073595	2.48029372405428	0.00961004431902918	0.105975470349
Merged-chr13-24292830-2	chr13	24292730	24292930	+	682.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-12040.0	NM_026825	68732.0	Mm.211047	NM_026825	ENSMUSG00000021338	Carmil1	1110037D04Rik|AI425970|CARMIL|CARML1|D130057M20|Lrrc16|Lrrc16a	capping protein regulator and myosin 1 linker 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-44981757-2	chr14	44981683	44981883	+	546.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6328.0	NM_008964	19217.0	Mm.4630	NM_008964	ENSMUSG00000037759	Ptger2	EP2|Ptgerep2	prostaglandin E receptor 2 (subtype EP2)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-96375581-3	chr9	96375499	96375699	+	819.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11168.0	NM_001357212	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	-1.02707219494055	-1.00871661693899	-1.02016743606284	-0.603989169686941	-1.02658361641416	-1.00623517666662	-0.69238611847482	-1.02343448171761	-0.385530127891028	0.905045224409377	1
Merged-chr12-32635209-4	chr12	32635078	32635278	+	999.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-185157.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	1.80585703177056	3.43934426506171	2.81387588544674	3.31342630188698	3.85597868396873	4.45915185006302	4.37026381655256	4.73883624242019	2.05549118289584	0.000237700285892075	0.00616852706891225
Merged-chr14-21751831-1	chr14	21751731	21751931	+	705.0	f1_c57bl6.idr	intron (NM_001359953, intron 1 of 5)	intron (NM_001359953, intron 1 of 5)	279.0	NM_001359953	67630.0	Mm.102765	NM_026283	ENSMUSG00000021770	Samd8	1110053F04Rik|1700010P07Rik|SMSr	sterile alpha motif domain containing 8	protein-coding	2.0137196202019	3.35056752187485	2.03288237781801	1.30189217684964	2.95041857499876	2.81045317171958	1.62741434563848	2.71983247394274	0.394043226353446	0.675171401188798	0.99440487726309
Merged-chr7-28981931-4	chr7	28981829	28982029	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285943)	promoter-TSS (NM_001285943)	-41.0	NM_001285942	73830.0	Mm.29714	NM_028659	ENSMUSG00000053565	Eif3k	1200009C21Rik|Eif3s12	eukaryotic translation initiation factor 3, subunit K	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-5020391-4	chr7	5020280	5020480	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290426)	promoter-TSS (NM_001290426)	4.0	NM_001033383	319748.0	Mm.86607	NM_001033383	ENSMUSG00000074405	Zfp865	6430526N21Rik|Znf865	zinc finger protein 865	protein-coding	3.12564661340274	3.51349886545118	3.88189559169772	4.03264019482879	3.06760693163388	2.06119860527368	3.910520709172	2.51329718873397	-0.927705391834702	0.153964783510694	0.609257741609928
Merged-chr5-72250402-3	chr5	72250304	72250504	+	876.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_003966, intron 9 of 22)	intron (NR_003966, intron 9 of 22)	47061.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-128686249-4	chr8	128686162	128686362	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010578, intron 1 of 15)	CpG	608.0	NM_010578	16412.0	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-123200900-2	chr4	123200800	123201000	+	659.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001085502)	promoter-TSS (NM_001085502)	-653.0	NM_001085502	230718.0	Mm.354635	NM_001085502	ENSMUSG00000054958	Nt5c1a	Cn1a|Gm49	5'-nucleotidase, cytosolic IA	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-118713538-4	chr14	118713450	118713650	+	941.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	-7331.0	NM_001033336	239273.0	Mm.40537	NM_001033336	ENSMUSG00000032849	Abcc4	ABCC4-N1|D630049P08Rik|MOATB|MRP4	ATP-binding cassette, sub-family C (CFTR/MRP), member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-125620232-4	chr7	125620124	125620324	+	931.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021887, intron 1 of 8)	MTD|LTR|ERVL-MaLR	16795.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	3.06834634594628	3.15739824529218	3.24416379015335	4.16892589709627	2.82356345088313	3.55632672369807	1.64526334084356	3.1678184389229	-0.855502557859896	0.222241109942397	0.713693361781433
Merged-chr7-98655839-4	chr7	98655745	98655945	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172280, intron 1 of 19)	CpG	724.0	NM_172280	233545.0	Mm.387819	NM_172280	ENSMUSG00000035401	Emsy	2210018M11Rik|2310016L09Rik|AU019521|AU019557	EMSY, BRCA2-interacting transcriptional repressor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-153804272-2	chr1	153804172	153804372	+	788.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001243223, intron 12 of 20)	intron (NM_001243223, intron 12 of 20)	39869.0	NM_001243223	240816.0	Mm.329340	NM_001243223	ENSMUSG00000042641	Rgsl1	4930415K13Rik|Gm202|Rgsl2	regulator of G-protein signaling like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-34297465-4	chr10	34297367	34297567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030203)	promoter-TSS (NM_030203)	46.0	NM_030203	72480.0	Mm.21485	NM_030203	ENSMUSG00000039485	Tspyl4	2610102M01Rik|B230210I21Rik|D10Bwg0791e	TSPY-like 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-55029593-4	chr1	55029484	55029684	+	988.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-2106.0	NM_031179	81898.0	Mm.279736	NM_031179	ENSMUSG00000025982	Sf3b1	155kDa|2810001M05Rik|AA409119|Prp10|SAP155|SF3b155|TA-8|Targ4	splicing factor 3b, subunit 1	protein-coding	2.93890463701079	3.07449640589466	2.82678348102008	3.47436357216408	4.05713999197871	4.01599363242757	3.6022908067922	4.28483052705338	1.37552919856293	0.00875599544234944	0.098994085470942
Merged-chr2-48716418-4	chr2	48716309	48716509	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-97700.0	NM_007396	11480.0	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98024138-2	chr11	98024038	98024238	+	677.416626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1511.0	NM_001282978	12295.0	Mm.41252	NM_031173	ENSMUSG00000020882	Cacnb1	CAB1|Cchb1|Cchlb1	calcium channel, voltage-dependent, beta 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-12320601-2	chr15	12320501	12320701	+	733.833374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025673)	promoter-TSS (NM_025673)	-895.0	NM_025673	66629.0	Mm.157655	NM_025673	ENSMUSG00000022200	Golph3	4733401N08Rik|5730410D03Rik|AW413496	golgi phosphoprotein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-86167551-4	chr17	86167454	86167654	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011104)	promoter-TSS (NM_011104)	-231.0	NM_011104	18754.0	Mm.24614	NM_011104	ENSMUSG00000045038	Prkce	5830406C15Rik|PKC[e]|PKCepsilon|Pkce|R75156	protein kinase C, epsilon	protein-coding	2.55482517113513	3.23999980224586	3.84797877543464	2.25248060760522	3.59092910975693	1.67485496046747	3.63638425681168	3.59116945274782	0.327820158765377	0.662563143470057	0.991056031673253
Merged-chr6-39557610-5	chr6	39557481	39557681	+	646.159973	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_172477, exon 1 of 19)	5' UTR (NM_172477, exon 1 of 19)	253.0	NM_172477	209773.0	Mm.440021	NM_172477	ENSMUSG00000038456	Dennd2a	B930096L08Rik|C130031G22|mKIAA1277	DENN/MADD domain containing 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153173528-2	chr2	153173428	153173628	+	665.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133847, intron 1 of 17)	B2_Mm1a|SINE|B2	12227.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-57777413-2	chr18	57777313	57777513	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_152225, intron 2 of 2)	intron (NR_152225, intron 2 of 2)	2582.0	NR_152224	100503033.0	Mm.381112	NR_152224		Gm19519	-	predicted gene, 19519	ncRNA	-1.23826193677681	-1.21241040182355	-1.22270105026776	-0.934241458926562	-1.23783648736863	-1.21018037537722	-1.22037147302458	-0.929982742503718	0.0323590357436516	0.9924297640193	1
Merged-chr10-45289393-2	chr10	45289293	45289493	+	673.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024286)	promoter-TSS (NM_024286)	88.0	NM_024286	78977.0	Mm.24748	NM_024286	ENSMUSG00000019848	Popdc3	AA682104|Pop3	popeye domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-112977459-2	chr12	112977359	112977559	+	551.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_201646, intron 3 of 3)	intron (NM_201646, intron 3 of 3)	896.0	NM_201646	399566.0	Mm.440140	NM_201646	ENSMUSG00000002803	Btbd6	-	BTB (POZ) domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-26744619-4	chr8	26744522	26744722	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	79801.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-107105132-1	chr3	107105032	107105232	+	664.0	f0_balb.idr	exon (NM_008417, exon 3 of 3)	exon (NM_008417, exon 3 of 3)	3565.0	NM_008417	16490.0	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26571594-4	chr17	26571498	26571698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026170, intron 1 of 9)	L1MD3|LINE|L1	10086.0	NM_026170	67458.0	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-131211027-4	chr2	131210919	131211119	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110992, intron 1 of 1)	intron (NR_110992, intron 1 of 1)	659.0	NR_110992	69596.0	Mm.2937	NM_027129	ENSMUSG00000068264	Ap5s1	0610038L13Rik|2310035K24Rik|AW060727|sigma5	adaptor-related protein 5 complex, sigma 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-101510090-2	chr13	101509969	101510169	+	885.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-112489.0	NR_046187	78136.0	Mm.399065	NR_046187		4922502H24Rik	-	RIKEN cDNA 4922502H24 gene	ncRNA	0.0176882757126882	0.0361300127672901	0.0301082700636711	0.0254493173368838	0.768422666302306	0.409984760213528	0.627633354529274	0.0262640725293541	4.10895697141369	0.0558571247273072	1
Merged-chr1-170939470-4	chr1	170939389	170939589	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11906.0	NM_001160215	98752.0	Mm.1850	NM_145141	ENSMUSG00000038421	Fcrla	BB219290|FCRL|FCRL1|FREB|Fcrlm1|Fcrx|Freb1|mFREB|mFcrX	Fc receptor-like A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83748673-1	chr6	83748573	83748773	+	564.0	f1_balb.idr	intron (NM_134157, intron 1 of 13)	intron (NM_134157, intron 1 of 13)	5656.0	NM_134157	110935.0	Mm.220823	NM_134157	ENSMUSG00000006269	Atp6v1b1	AW208839|Atp6b1|D630003L15|D630030L16Rik|D630039P21Rik|Vpp-3|Vpp3	ATPase, H+ transporting, lysosomal V1 subunit B1	protein-coding	0.917021801220561	0.305162685743177	0.296008057982892	0.288864872347842	0.929850903170685	0.307210744279229	0.298037045609622	1.35120622553467	1.63902146017545	0.403305447151104	1
Merged-chr15-59726716-2	chr15	59726616	59726816	+	663.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	68243.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135737313-2	chr5	135737213	135737413	+	599.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172541, intron 3 of 11)	intron (NM_172541, intron 3 of 11)	-1424.0	NR_106001	102466791.0		NR_106001	ENSMUSG00000099197	Mir7034	Gm27372|mmu-mir-7034	microRNA 7034	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-93995607-3	chr13	93995524	93995724	+	753.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62172.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-59350742-3	chr19	59350608	59350808	+	830.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4928.0	NM_001033222	107368.0	Mm.27250	NM_001033222	ENSMUSG00000074746	Pdzd8	A630041P07Rik|AV329468|AW228944|Pdzk8	PDZ domain containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-54970985-4	chr18	54970901	54971101	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175751, intron 2 of 9)	intron (NM_175751, intron 2 of 9)	19179.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-92667040-4	chr5	92666918	92667118	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360020, intron 3 of 9)	intron (NM_001360020, intron 3 of 9)	8109.0	NM_001360018	320696.0	Mm.209991	NM_177230	ENSMUSG00000050050	Ccdc158	4932413O14Rik	coiled-coil domain containing 158	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115703146-2	chr11	115702943	115703143	+	850.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008163, intron 1 of 5)	B1_Mus2|SINE|Alu	-3115.0	NM_001313936	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129631299-2	chr2	129631208	129631408	+	974.666626	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001291021, exon 6 of 6)	3' UTR (NM_001291021, exon 6 of 6)	35846.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	1.75996204346283	1.00980776531086	0.991181912657394	1.51199046654553	1.30695268388613	2.20636967315238	1.56945435135955	1.96872025741815	1.42155201649927	0.238521716984844	0.735047147358944
Merged-chr2-24977263-4	chr2	24977172	24977372	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146251, intron 1 of 34)	intron (NM_146251, intron 1 of 34)	1239.0	NM_146251	241274.0	Mm.389243	NM_146251	ENSMUSG00000036833	Pnpla7	BC027342|E430013P11Rik|Nre	patatin-like phospholipase domain containing 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-24311405-4	chr2	24311305	24311505	+	919.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20209.0	NM_153077	215274.0	Mm.218750	NM_153077	ENSMUSG00000046845	Il1f10	-	interleukin 1 family, member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-62510305-2	chr10	62510205	62510405	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358965, intron 1 of 3)	B1F2|SINE|Alu	-2548.0	NM_011157	19073.0	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-101597407-4	chr3	101597302	101597502	+	968.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144900, intron 1 of 22)	intron (NM_144900, intron 1 of 22)	7305.0	NM_144900	11928.0	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98862412-2	chr11	98862312	98862512	+	935.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur3|SINE|Alu	-1186.0	NM_197940	68524.0	Mm.28661	NM_197940	ENSMUSG00000038013	Wipf2	1110014J05Rik|5730509C05Rik|AA407487|Gm1176|Wich|Wire	WAS/WASL interacting protein family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-118391137-2	chr1	118391037	118391237	+	939.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359330, intron 1 of 39)	MTD|LTR|ERVL-MaLR	2079.0	NM_001359334	76707.0	Mm.138740	NM_029709	ENSMUSG00000064302	Clasp1	1700030C23Rik|5730583A19Rik|B130045P17Rik|CLASP1alpha	CLIP associating protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118178928-2	chr11	118178828	118179028	+	670.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001112700, intron 9 of 12)	intron (NM_001112700, intron 9 of 12)	33814.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-51216167-2	chr3	51216067	51216267	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	-8280.0	NM_009834	12457.0	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-69835475-2	chr14	69835375	69835575	+	821.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4932.0	NM_028560	73523.0	Mm.23509	NM_028526	ENSMUSG00000022085	Pebp4	PEBP-4	phosphatidylethanolamine binding protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-51843990-4	chr13	51843886	51844086	+	998.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2689.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-57057104-2	chr17	57057004	57057204	+	952.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025877, intron 2 of 9)	intron (NM_025877, intron 2 of 9)	2759.0	NM_025877	66972.0	Mm.23720	NM_025877	ENSMUSG00000046329	Slc25a23	2310067G05Rik|SCaMC-3	solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45510500-4	chr7	45510425	45510625	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163662)	promoter-TSS (NM_001163662)	-117.0	NM_001163662	18220.0	Mm.258923	NM_008749	ENSMUSG00000030824	Nucb1	B230337F23Rik|C77483|Calnuc|MTEST82|Nucb	nucleobindin 1	protein-coding	3.34641716737239	3.43903897405441	3.55041964086962	3.3117621981869	3.59844290600186	3.06680691548969	2.19457012073391	2.31284088335711	-0.786481513647185	0.228522791423405	0.721861600842291
Merged-chr16-25798048-2	chr16	25797948	25798148	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001127259, intron 3 of 13)	intron (NM_001127259, intron 3 of 13)	-3868.0	NM_001127263	22061.0	Mm.20894	NM_011641	ENSMUSG00000022510	Trp63	AI462811|Ket|P51/P63|P63|P73l|Tp63|Trp53rp1	transformation related protein 63	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-125177182-1	chr8	125177082	125177282	+	607.25	f0_balb.idr	intron (NM_174854, intron 9 of 12)	intron (NM_174854, intron 9 of 12)	122987.0	NM_174854	244667.0	Mm.233504	NM_170596	ENSMUSG00000043051	Disc1	-	disrupted in schizophrenia 1	protein-coding	0.719092773828307	0.839128828300032	0.802542259454786	0.77261970135061	2.08424625398298	1.85518253223458	3.47651657844137	1.98879780196311	5.99927713235099	8.39263508387386e-06	0.000396436361166609
Merged-chr13-107646311-3	chr13	107646206	107646406	+	667.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41091.0	NR_045900	72257.0	Mm.234155	NR_045900	ENSMUSG00000102000	1700006H21Rik	-	RIKEN cDNA 1700006H21 gene	ncRNA	0.953970270149494	0.854715461822163	0.485323615359141	0.479053706834119	0.863688562182576	1.12935257890293	0.960092894767334	0.480150641790548	0.909072842316522	0.58566326363792	1
Merged-chr9-83546027-4	chr9	83545922	83546122	+	813.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2316.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-11530228-3	chr2	11530120	11530320	+	974.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177758, intron 1 of 14)	intron (NM_001177758, intron 1 of 14)	23709.0	NM_001177758	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-8940702-2	chr19	8940602	8940802	+	775.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144872, intron 20 of 21)	intron (NM_144872, intron 20 of 21)	-1218.0	NM_011842	23942.0	Mm.25339	NM_011842	ENSMUSG00000071646	Mta2	AW550797|Mata1l1|Mta1l1|mmta2	metastasis-associated gene family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-94499119-2	chr16	94499019	94499219	+	713.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007834, intron 7 of 7)	intron (NM_007834, intron 7 of 7)	27510.0	NM_007834	13185.0	Mm.7472	NM_007834	ENSMUSG00000022898	Dscr3	AW538125|Dcra	DSCR3 arrestin fold containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-168583245-4	chr2	168583205	168583405	+	900.716675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291169, intron 1 of 10)	intron (NM_001291169, intron 1 of 10)	7060.0	NM_001291178	18019.0	Mm.116802	NM_010899	ENSMUSG00000027544	Nfatc2	AI607462|NF-ATc2|NF-ATp|NFAT1|NFAT1-D|Nfatp	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-23550572-2	chr16	23550472	23550672	+	845.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29757.0	NM_001359083	17174.0	Mm.1213	NM_008555	ENSMUSG00000022887	Masp1	AW048060|CCPII|Crarf|Masp1/3	mannan-binding lectin serine peptidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-94979131-4	chr4	94979029	94979229	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177239)	promoter-TSS (NM_177239)	-29.0	NM_177239	320713.0	Mm.208868	NM_177239	ENSMUSG00000062627	Mysm1	C130067A03Rik|C530050H10Rik	myb-like, SWIRM and MPN domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-54684245-2	chr13	54684145	54684345	+	614.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001146025, intron 2 of 10)	intron (NM_001146025, intron 2 of 10)	3563.0	NM_001146025	105239.0	Mm.25366	NM_134064	ENSMUSG00000034928	Rnf44	AI854545|mKIAA1100	ring finger protein 44	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-148873204-2	chr2	148873104	148873304	+	587.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009976, intron 1 of 2)	intron (NM_009976, intron 1 of 2)	2308.0	NM_009976	13010.0	Mm.4263	NM_009976	ENSMUSG00000027447	Cst3	CysC	cystatin C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-35642462-1	chr11	35642362	35642562	+	667.0	f1_c57bl6.idr	intron (NM_011412, intron 20 of 35)	Lx8|LINE|L1	25646.0	NR_029799	723924.0		NR_029799	ENSMUSG00000065583	Mir218-2	Mirn218-2|mir-218-2	microRNA 218-2	ncRNA	2.98946903463238	0.885256216113149	2.59768643376711	2.26954631597005	1.26162445927251	0.892319390154305	0.860152665930636	0.831210186019447	-4.38513621429142	0.00192048894097356	0.032271745537536
Merged-chr4-149712198-2	chr4	149712088	149712288	+	733.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10559.0	NM_001029837	18707.0	Mm.229108	NM_008840	ENSMUSG00000039936	Pik3cd	2410099E07Rik|2610208K16Rik|AW545373|p110delta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding	1.66565947039363	1.04302730901058	1.69558418483712	1.7582109896885	1.77400404485262	1.89325891237525	1.57680316616656	1.01467636099508	0.118061671470988	0.921870391759943	0.998431161219273
Merged-chr1-89742591-4	chr1	89742505	89742705	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037136, intron 10 of 16)	ORR1E|LTR|ERVL-MaLR	-58713.0	NR_015540	74403.0	Mm.444291	NR_015540		4933400F21Rik	1700091C04Rik|4930565K10Rik	RIKEN cDNA 4933400F21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-11478601-4	chr8	11478490	11478690	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011227)	promoter-TSS (NM_011227)	-91.0	NM_011227	19332.0	Mm.37632	NM_011227	ENSMUSG00000031504	Rab20	AA536966|D8Ertd350e	RAB20, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-147042781-4	chr6	147042671	147042871	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145573)	promoter-TSS (NM_145573)	1.0	NM_145573	232536.0	Mm.46656	NM_145573	ENSMUSG00000040112	Mrps35	MDSO23|MRP-S28|MRPS28	mitochondrial ribosomal protein S35	protein-coding	5.33420077650549	6.14743150900677	5.09669130771362	5.65008562462301	6.07008733281094	6.58788514256827	5.84574410127223	5.13459160657842	0.434954090333078	0.179259519061214	0.650430154142071
Merged-chr8-70303583-2	chr8	70303483	70303683	+	791.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021538, intron 1 of 9)	intron (NM_021538, intron 1 of 9)	798.0	NM_021538	59042.0	Mm.28668	NM_021538	ENSMUSG00000055681	Cope	1110005D17Rik|Cope1	coatomer protein complex, subunit epsilon	protein-coding	0.330382192933125	0.183218423177973	0.173987752177852	0.366121537897389	0.1564037567386	1.33095114730393	0.176035945082632	0.915248261835429	2.92068386711488	0.134193481587118	1
Merged-chr8-46940786-2	chr8	46940686	46940886	+	807.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	-46101.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4232346-4	chr19	4232214	4232414	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_132280)	promoter-TSS (NR_132280)	-101.0	NR_132280	69745.0	Mm.32518	NM_027196	ENSMUSG00000024854	Pold4	2410012M21Rik|AI463381|AW060307|Polds|p12	polymerase (DNA-directed), delta 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-78137330-4	chr10	78137226	78137426	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32442.0	NM_138601	28295.0	Mm.268691	NM_138601	ENSMUSG00000053329	D10Jhu81e	C21orf33|ES1	DNA segment, Chr 10, Johns Hopkins University 81 expressed	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-38696909-2	chr6	38696809	38697009	+	587.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001294144)	TTS (NM_001294144)	33840.0	NM_001101507	665180.0	Mm.349066	NM_001101507	ENSMUSG00000079598	Clec2l	AI414054|AW122724|Gm1064	C-type lectin domain family 2, member L	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-25223575-4	chr5	25223480	25223680	+	911.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144908, intron 1 of 11)	intron (NM_144908, intron 1 of 11)	708.0	NM_144908	231050.0	Mm.246718	NM_144908	ENSMUSG00000038072	Galnt11	A430075I06Rik|AI648252|E430002F06Rik	polypeptide N-acetylgalactosaminyltransferase 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-48039676-3	chr17	48039560	48039760	+	844.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1367.0	NM_029689	76651.0	Mm.76918	NM_029689	ENSMUSG00000094928	1700122O11Rik	-	RIKEN cDNA 1700122O11 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191251242-2	chr1	191251135	191251335	+	787.083374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26781.0	NR_151547	100504360.0	Mm.16927	NM_001033188		D730003I15Rik	AU020850	RIKEN cDNA D730003I15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-136215923-2	chr5	136215823	136216023	+	665.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16969.0	NM_025774	66801.0	Mm.425295	NM_025774	ENSMUSG00000039737	Prkrip1	8430424D23Rik|C114	Prkr interacting protein 1 (IL11 inducible)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117912896-4	chr11	117912797	117912997	+	905.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39371.0	NM_027919	71776.0	Mm.3200	NM_027919	ENSMUSG00000017713	Tha1	1300017K07Rik|GLY1	threonine aldolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122390023-2	chr5	122389923	122390123	+	671.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1855.0	NM_019824	56378.0	Mm.275942	NM_019824	ENSMUSG00000029465	Arpc3	1110006A04Rik|p21-ARC|p21-Ar|p21Arc	actin related protein 2/3 complex, subunit 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71370058-2	chr8	71370044	71370244	+	685.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001145780)	TTS (NM_001145780)	-1154.0	NM_029865	77090.0	Mm.440170	NM_029865	ENSMUSG00000002396	Ocel1	9430098E02Rik|AI326022|AI593544	occludin/ELL domain containing 1	protein-coding	2.24491901463833	2.1000831505298	2.53880187226473	2.64930991308231	2.15449512547106	2.64609650416335	1.41292601892265	2.66281072305537	-0.191427185764674	0.828092187397717	0.998431161219273
Merged-chr15-55121204-4	chr15	55121118	55121318	+	956.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145470, intron 1 of 8)	intron (NM_145470, intron 1 of 8)	-7636.0	NR_045093	100503794.0	Mm.360519	NR_045093	ENSMUSG00000053749	Gm9920	-	predicted gene 9920	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-14350598-2	chr14	14350498	14350698	+	801.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008369, intron 6 of 11)	intron (NM_008369, intron 6 of 11)	4103.0	NM_008369	16188.0	Mm.425857	NM_008369	ENSMUSG00000068758	Il3ra	CD123|CDw123|SUT-1	interleukin 3 receptor, alpha chain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-148616198-2	chr6	148616098	148616298	+	548.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1889.0	NR_045867	622319.0	Mm.491049	NM_001037912	ENSMUSG00000070995	Gm6313	EG622319	predicted gene 6313	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-77897615-2	chr16	77897515	77897715	+	544.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6B|LTR|ERVK	251342.0	NR_029540	723952.0		NR_029540	ENSMUSG00000065472	Mir125b-2	Mirn125b-2|mir-125b-2	microRNA 125b-2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-18054771-2	chr3	18054671	18054871	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_021560, exon 1 of 1)	5' UTR (NM_021560, exon 1 of 1)	446.0	NM_021560	59058.0	Mm.149938	NM_021560	ENSMUSG00000025128	Bhlhe22	Beta3|Beta3a|Bhlhb5	basic helix-loop-helix family, member e22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-32730949-2	chr15	32730849	32731049	+	615.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42203.0	NR_155440	105245909.0	Mm.229263	NR_155440	ENSMUSG00000115749	Gm41289	-	predicted gene, 41289	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106319056-6	chr11	106318980	106319180	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_133199, exon 24 of 24)	3' UTR (NM_133199, exon 24 of 24)	-4518.0	NM_001313939	15985.0	Mm.2987	NM_008339	ENSMUSG00000040592	Cd79b	B29|Ig-beta|Igb|Igbeta	CD79B antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-65390566-2	chr5	65390466	65390666	+	939.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310612)	promoter-TSS (NM_001310612)	865.0	NM_011292	20005.0	Mm.300271	NM_011292	ENSMUSG00000047215	Rpl9	-	ribosomal protein L9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127165814-3	chr10	127165674	127165874	+	876.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001244618)	promoter-TSS (NM_001244618)	-57.0	NM_027739	14421.0	Mm.386762	NM_008080	ENSMUSG00000006731	B4galnt1	4933429D13Rik|Gal-NAc-T|GalNAc-T|GalNAcT|Galgt1|Ggm-2|Ggm2	beta-1,4-N-acetyl-galactosaminyl transferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-8214451-4	chr14	8214346	8214546	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001305936)	promoter-TSS (NM_001305936)	-56.0	NM_001305936	71393.0	Mm.292712	NM_027782	ENSMUSG00000021752	Kctd6	5430433B02Rik|AU044285	potassium channel tetramerisation domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53409718-3	chr4	53409604	53409804	+	585.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30709.0	NM_001159633	100434.0	Mm.482207	NM_133891	ENSMUSG00000028412	Slc44a1	2210409B22Rik|4833416H08Rik|AW547365|CHTL1|CTL1|Cdw92	solute carrier family 44, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-151118707-4	chr1	151118597	151118797	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F1|LTR|ERVL-MaLR	-19337.0	NR_038011	402734.0	Mm.337666	NR_038011		C730036E19Rik	lncLSTR	RIKEN cDNA C730036E19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-148448454-4	chr4	148448326	148448526	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020009)	promoter-TSS (NM_020009)	-156.0	NM_020009	56717.0	Mm.21158	NM_020009	ENSMUSG00000028991	Mtor	2610315D21Rik|AI327068|FRAP|FRAP2|Frap1|RAFT1|RAPT1|flat	mechanistic target of rapamycin kinase	protein-coding	4.72854971835202	5.59131490584132	5.77510506184464	4.63627271336912	4.44470619847726	4.80211010773382	5.67525751174211	4.56430385529122	-0.362228790737733	0.356782813763492	0.85378439273359
Merged-chr2-153343670-1	chr2	153343570	153343770	+	567.0	f1_balb.idr	intron (NR_040318, intron 1 of 1)	MLT1E2|LTR|ERVL-MaLR	2140.0	NR_040318	72326.0	Mm.400102	NR_040318	ENSMUSG00000073236	2500004C02Rik	-	RIKEN cDNA 2500004C02 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-111210140-2	chr8	111210040	111210240	+	651.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009149, intron 1 of 25)	MT2B1|LTR|ERVL	49062.0	NM_009149	20340.0	Mm.276271	NM_009149	ENSMUSG00000003316	Glg1	AI593353|AW537898|CFR|CFR-1|ESL-1|MG-160|MG160|Selel	golgi apparatus protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-48927253-2	chr11	48927153	48927353	+	566.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001045540)	promoter-TSS (NM_001045540)	-71.0	NM_001045540	620913.0	Mm.452174	NM_001045540	ENSMUSG00000048852	Gm12185	Irgb2b1	predicted gene 12185	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80045580-2	chr7	80045479	80045679	+	675.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175433, intron 1 of 4)	intron (NM_175433, intron 1 of 4)	19351.0	NM_175433	209225.0	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	0.966344841520616	0.967781839799072	0.583550179305527	1.49685826150599	0.975841894115276	0.803830475342153	0.585652499220946	0.905952444925874	-1.1206861153534	0.45896187819599	1
Merged-chr10-80033339-4	chr10	80033230	80033430	+	961.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 1 of 4)	intron (NR_038088, intron 1 of 4)	6329.0	NM_025554	66420.0	Mm.18579	NM_025554	ENSMUSG00000004667	Polr2e	2410021N14Rik|25kDa|AW208866|RPB5|XAP4	polymerase (RNA) II (DNA directed) polypeptide E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28312106-4	chr7	28312026	28312226	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025616)	promoter-TSS (NM_025616)	-80.0	NM_025616	66525.0	Mm.167913	NM_025616	ENSMUSG00000003438	Timm50	2810403L02Rik|AU015082|TIM50L	translocase of inner mitochondrial membrane 50	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24549930-4	chr17	24549810	24550010	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013630)	promoter-TSS (NM_013630)	-40.0	NM_013630	18763.0	Mm.30435	NM_013630	ENSMUSG00000032855	Pkd1	PC1|mFLJ00285	polycystin 1, transient receptor poteintial channel interacting	protein-coding	5.17392093477913	5.0576127337247	5.6221236375589	5.07874640470426	5.47661044368422	5.00157670530866	5.91294401759318	5.86824676788516	0.414532700628396	0.171209800809462	0.638755914366425
Merged-chr8-84659347-2	chr8	84659232	84659432	+	744.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3520.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	2.0197479023085	2.1838677340203	1.05646545550578	2.54832063049571	1.70850437649456	2.41540142599334	1.06262084824438	1.03834915152741	-0.912537986452169	0.450828870613735	0.916907738284681
Merged-chr3-20140279-2	chr3	20140179	20140379	+	644.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355261, intron 4 of 7)	L1MD2|LINE|L1	14837.0	NM_001355261	27357.0	Mm.6375	NM_013755	ENSMUSG00000019528	Gyg	AU017667|GN1|Gyg1	glycogenin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-69447426-4	chr12	69447343	69447543	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28107.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-154318016-3	chr3	154317920	154318120	+	760.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010713, intron 6 of 8)	intron (NM_010713, intron 6 of 8)	12540.0	NM_010713	16875.0	Mm.15530	NM_010713	ENSMUSG00000096225	Lhx8	L3|Lhx7	LIM homeobox protein 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-160353956-4	chr2	160353837	160354037	+	982.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13128.0	NM_010658	16658.0	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	2.82234961144825	3.35367850718729	2.95234424838107	3.31436295762494	2.84573448129317	3.37744185413119	2.97521813727887	3.33067547385232	0.036902310840681	0.951479249791484	0.998431161219273
Merged-chr7-98836764-4	chr7	98836676	98836876	+	863.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285792, intron 2 of 6)	intron (NM_001285792, intron 2 of 6)	1664.0	NM_001285792	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70748105-2	chr8	70748005	70748205	+	651.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001310465, exon 13 of 17)	exon (NM_001310465, exon 13 of 17)	-6574.0	NM_001328047	19339.0	Mm.5083	NM_009001	ENSMUSG00000031840	Rab3a	-	RAB3A, member RAS oncogene family	protein-coding	-0.991597071560028	-1.11266276692436	-1.12372915630895	-1.13234486067054	-1.13506748179545	-1.11026463418018	-1.12122396832063	-0.590291635890923	1.70329920231503	0.601976331032042	1
Merged-chr1-13660001-4	chr1	13659911	13660111	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145381, intron 1 of 6)	B1F1|SINE|Alu	498.0	NM_145381	212442.0	Mm.89572	NM_145381	ENSMUSG00000025937	Lactb2	Cgi-83|E430032H21Rik	lactamase, beta 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-25279954-2	chr15	25279854	25280054	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28|LTR|ERVL	133810.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-11028343-2	chr4	11028243	11028443	+	578.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20724.0	NM_175175	71801.0	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-84967229-4	chr16	84967132	84967332	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198825, intron 13 of 15)	intron (NM_001198825, intron 13 of 15)	-4979.0	NR_045889	100038614.0	Mm.441351	NR_045889	ENSMUSG00000115518	Gm10791	-	predicted gene 10791	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-121281040-2	chr14	121280976	121281176	+	696.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_134082, intron 26 of 26)	intron (NM_134082, intron 26 of 26)	32370.0	NR_155502	320268.0	Mm.435974	NR_155502		B930095G15Rik	-	RIKEN cDNA B930095G15 gene	ncRNA	0.214318263257082	0.0843095981276551	0.767687924508575	0.0732940730725498	0.816222448048776	0.085706853740979	0.266647582011874	0.0741344234630348	0.197995632370994	0.923179779524938	1
Merged-chr11-110372378-2	chr11	110372267	110372467	+	794.5	f0_balb.idr|f0_c57.idr	Intergenic	G-rich|Low_complexity|Low_complexity	-26735.0	NM_001356345	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-88318751-4	chr7	88318685	88318885	+	899.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	40700.0	NM_001311790	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36793065-2	chr1	36792965	36793165	+	711.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_018872, exon 41 of 41)	exon (NM_018872, exon 41 of 41)	14081.0	NM_001289612	22637.0	Mm.8038	NM_009539	ENSMUSG00000026117	Zap70	Srk|ZAP-70|mrtle|mur	zeta-chain (TCR) associated protein kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-131921689-3	chr4	131921598	131921798	+	913.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001201367)	promoter-TSS (NM_001201367)	-73.0	NM_001201367	623230.0	Mm.421179	NM_001201367	ENSMUSG00000070720	Tmem200b	EG623230	transmembrane protein 200B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-111973652-1	chr10	111973552	111973752	+	552.0	f1_c57bl6.idr	intron (NM_178610, intron 1 of 9)	intron (NM_178610, intron 1 of 9)	957.0	NM_178610	52705.0	Mm.34606	NM_178610	ENSMUSG00000063334	Krr1	2610511F02Rik|AI255219|AI428520|D10Ertd773e|Hrb2	KRR1, small subunit (SSU) processome component, homolog (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-65407320-4	chr2	65407210	65407410	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42910.0	NR_105755	102466151.0		NR_105755	ENSMUSG00000099184	Mir6337	Gm27877|mmu-mir-6337	microRNA 6337	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88441079-4	chr3	88441004	88441204	+	843.30835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_105978)	promoter-TSS (NR_105978)	-153.0	NR_105978	102465611.0		NR_105978	ENSMUSG00000098655	Mir7011	Gm27677|mmu-mir-7011	microRNA 7011	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-94228051-4	chr8	94227988	94228188	+	886.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172410, intron 3 of 22)	intron (NM_172410, intron 3 of 22)	13524.0	NM_172410	71805.0	Mm.458170	NM_172410	ENSMUSG00000032939	Nup93	2410008G02Rik	nucleoporin 93	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-108599517-3	chr6	108599448	108599648	+	785.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104577, intron 3 of 6)	MLTR14|LTR|ERV1	23619.0	NR_040757	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	1.18085477273721	1.34843174791629	1.04622709630224	1.14234954284677	0.844118714065719	0.721677861771907	0.898240514211376	1.2604524559584	-1.13065929243489	0.412624872621043	0.894783826796838
Merged-chr9-118861942-2	chr9	118861842	118862042	+	859.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 9 of 13)	B4A|SINE|B4	-64594.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16097584-1	chr7	16097484	16097684	+	1000.0	f1_c57bl6.idr	promoter-TSS (NM_025898)	promoter-TSS (NM_025898)	-996.0	NM_025898	108124.0	Mm.104540	NM_025898	ENSMUSG00000006024	Napa	1500039N14Rik|AW209189|RA81|SNAP-alpha|SNAPA|SNARE|a-SNAP|hyh	N-ethylmaleimide sensitive fusion protein attachment protein alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-29738382-2	chr5	29738282	29738482	+	781.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359198, intron 1 of 8)	intron (NM_001359198, intron 1 of 8)	-2446.0	NR_028426	332993.0	Mm.473746	NR_028426		Gm5129	EG332993	predicted gene 5129	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-95795369-4	chr15	95795250	95795450	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 1 of 19)	intron (NM_175344, intron 1 of 19)	4507.0	NM_001253813	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30436354-3	chr2	30436249	30436449	+	732.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138748, intron 5 of 9)	intron (NM_138748, intron 5 of 9)	20299.0	NM_138748	110854.0	Mm.275393	NM_138748	ENSMUSG00000039515	Ptpa	2610042B21Rik|C77440|N28142|PR53|Ppp2r4	protein phosphatase 2 protein activator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-52905271-3	chr2	52905180	52905380	+	770.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	MLT1A|LTR|ERVL-MaLR	47412.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-60727285-4	chr11	60727198	60727398	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302207)	promoter-TSS (NM_001302207)	-35.0	NM_001302207	14248.0	Mm.339755	NM_022009	ENSMUSG00000002812	Flii	3632430F08Rik|Fliih	flightless I actin binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-181737796-3	chr2	181737697	181737897	+	657.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22107.0	NM_001318924	18389.0	Mm.285075	NM_011012	ENSMUSG00000027584	Oprl1	KOR-3|KOR3|LC132|MOR-C|NOP|ORGC|ORL1|Oprl|XOR1|morc	opioid receptor-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-57907610-2	chr15	57907510	57907710	+	880.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-4589.0	NM_001081396	210544.0	Mm.390835	NM_199300	ENSMUSG00000022364	Tbc1d31	4B3|D330013L20Rik|Gm85|Wdr67	TBC1 domain family, member 31	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-12741359-4	chr17	12741344	12741544	+	812.020813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027773, intron 1 of 2)	CpG	133.0	NR_027784	104103.0	Mm.26553	NR_002853	ENSMUSG00000078247	Airn	2810051F02Rik|2810434M15Rik|AI256653|AI597500|AW049873|Air|B930018I07Rik|D17Ertd663e|IGF2RAS	antisense Igf2r RNA	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-78543696-2	chr9	78543596	78543796	+	703.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172773, intron 9 of 10)	intron (NM_172773, intron 9 of 10)	44349.0	NM_172773	235504.0	Mm.46932	NM_172773	ENSMUSG00000049624	Slc17a5	4631416G20Rik|4732491M05|AST|ISSD|NSD|SD|SIALIN|SIASD|SLD	solute carrier family 17 (anion/sugar transporter), member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-4796027-2	chr9	4795927	4796127	+	742.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_019691, exon 1 of 17)	5' UTR (NM_019691, exon 1 of 17)	207.0	NM_001113180	14802.0	Mm.209263	NM_019691	ENSMUSG00000025892	Gria4	GluA4|GluR-D|Glur-4|Glur4|Gluralpha4|spkw1	glutamate receptor, ionotropic, AMPA4 (alpha 4)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118648202-2	chr9	118648102	118648302	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 4 of 27)	intron (NM_133721, intron 4 of 27)	41493.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	-1.84446540621454	-1.66703209084435	-1.82297003008319	-1.83062437091832	-1.84230234211872	-1.6650127732569	-1.82086056797065	-1.82925424756847	0.037684011990387	0.991491645451152	1
Merged-chr12-84176859-4	chr12	84176752	84176952	+	929.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163501, intron 1 of 12)	intron (NM_001163501, intron 1 of 12)	17163.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5621539-1	chr19	5621439	5621639	+	549.0	f1_balb.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	-11445.0	NM_178637	81601.0	Mm.228930	NM_178637	ENSMUSG00000024926	Kat5	AI839539|CPLA2|Htatip|Htatip1|PLIP|Tip55|Tip60	K(lysine) acetyltransferase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-87143726-3	chr11	87143663	87143863	+	874.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197987, intron 5 of 23)	PB1D10|SINE|Alu	16688.0	NM_197987	68729.0	Mm.17436	NM_197987	ENSMUSG00000018548	Trim37	1110032A10Rik|2810004E07Rik|AI848587|AU043018|MUL|TEF3|mKIAA0898	tripartite motif-containing 37	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-59237287-4	chr1	59237202	59237402	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028717)	promoter-TSS (NM_028717)	-71.0	NM_028717	74018.0	Mm.272078	NM_028717	ENSMUSG00000026024	Als2	3222402C23Rik|9430073A21Rik|Als2cr6|Alsin|mKIAA1563	alsin Rho guanine nucleotide exchange factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-86870931-3	chr8	86870834	86871034	+	914.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030563, intron 1 of 6)	MTE2a|LTR|ERVL-MaLR	14324.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102396189-2	chr12	102396089	102396289	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011175, intron 11 of 13)	intron (NM_011175, intron 11 of 13)	43624.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-101759939-4	chr12	101759837	101760037	+	948.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361987, intron 9 of 10)	intron (NM_001361987, intron 9 of 10)	-41414.0	NM_001082976	74413.0	Mm.275939	NM_028924	ENSMUSG00000021187	Tc2n	4933406D09Rik|Mtac2d1|Tac2-N	tandem C2 domains, nuclear	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-79663975-3	chr17	79663878	79664078	+	831.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201361, intron 5 of 10)	intron (NM_201361, intron 5 of 10)	49078.0	NM_201361	381110.0	Mm.209801	NM_201361	ENSMUSG00000036368	Rmdn2	AW061290|Fam82a1|RMD-2|mRMD-2	regulator of microtubule dynamics 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152685757-2	chr1	152685657	152685857	+	930.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346117, intron 1 of 18)	intron (NM_001346117, intron 1 of 18)	-60540.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-161463921-3	chr1	161463816	161464016	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30741.0	NM_183391	240873.0	Mm.276823	NM_183391	ENSMUSG00000066755	Tnfsf18	Gitrl|Tnlg2a	tumor necrosis factor (ligand) superfamily, member 18	protein-coding	3.56960903909008	3.93728626523608	3.72094932552663	3.22646738867998	4.7336558150879	5.33402999207811	3.56932838686735	4.37599811736712	1.34538926024903	0.00585248120978391	0.0754492151378804
Merged-chr14-103472409-1	chr14	103472309	103472509	+	605.0	f0_c57.idr	Intergenic	Intergenic	-40932.0	NM_022886	64929.0	Mm.244003	NM_022886	ENSMUSG00000022123	Scel	9230114I02Rik	sciellin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-189700339-1	chr1	189700239	189700439	+	740.0	f1_balb.idr	Intergenic	Intergenic	-12253.0	NM_001081363	108000.0	Mm.129746	NM_001081363	ENSMUSG00000026605	Cenpf	6530404A22Rik|AI325968|CENF|Lek1|PRO1779|mitosin	centromere protein F	protein-coding	1.34506745644894	0.719330354416719	0.705940546528614	1.43422213455795	1.81815747942514	1.30398367347224	0.708915308662544	0.898043660978217	0.62771678493002	0.674857274100027	0.99440487726309
Merged-chr16-21701994-3	chr16	21701898	21702098	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-7333.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-129740467-3	chr6	129740344	129740544	+	870.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177155)	promoter-TSS (NM_177155)	40.0	NM_177155	320407.0	Mm.123265	NM_177155	ENSMUSG00000043932	Klri2	A530090P03Rik	killer cell lectin-like receptor family I member 2	protein-coding	2.25229396997665	2.16675618685511	2.33611052191692	2.27175914387701	1.82811006400843	2.54088565961007	2.23999212804897	1.56577164905318	-0.395472364669094	0.656765011783596	0.988505467120973
Merged-chr18-73812797-4	chr18	73812688	73812888	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145494, intron 1 of 15)	B4A|SINE|B4	2604.0	NM_145494	107029.0	Mm.36817	NM_145494	ENSMUSG00000024556	Me2	AW120568|D030040L20Rik|NAD-ME	malic enzyme 2, NAD(+)-dependent, mitochondrial	protein-coding	2.19643626889278	1.86966512383105	2.66993054343735	2.59186840520162	2.47452027652728	3.59263897349867	3.19101478718335	3.43583498277886	1.60801680344527	0.0260578489406398	0.215714400820927
Merged-chr17-65741387-2	chr17	65741287	65741487	+	762.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_133685, intron 1 of 6)	RMER6A|LTR|ERVK	31365.0	NM_133685	106572.0	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-93918510-4	chr16	93918415	93918615	+	973.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_019500)	TTS (NM_019500)	11052.0	NM_001165925	56173.0	Mm.328716	NM_019500	ENSMUSG00000047109	Cldn14	AI851731	claudin 14	protein-coding	4.54039855658524	4.77888204806473	2.94659108028554	3.55419654906465	3.31740639327148	3.44903018528169	2.03138640888289	3.71866765196543	-1.26034750565755	0.0434498504445398	0.299041640675149
Merged-chr7-45337592-2	chr7	45337492	45337692	+	932.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_010473, intron 2 of 5)	intron (NM_010473, intron 2 of 5)	2323.0	NM_010473	15464.0	Mm.39968	NM_010473	ENSMUSG00000038239	Hrc	-	histidine rich calcium binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-47595111-4	chr6	47595013	47595213	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146689)	promoter-TSS (NM_001146689)	-83.0	NM_007971	14056.0	Mm.246688	NM_007971	ENSMUSG00000029687	Ezh2	Enx-1|Enx1h|KMT6|mKIAA4065	enhancer of zeste 2 polycomb repressive complex 2 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-14165802-4	chr2	14165674	14165874	+	839.6749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-8750.0	NM_001081310	625286.0	Mm.158781	NM_001081310	ENSMUSG00000061531	Tmem236	2010003H20Rik|Fam23a|Gm613	transmembrane protein 236	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99249276-2	chr15	99249176	99249376	+	797.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164156, intron 3 of 13)	intron (NM_001164156, intron 3 of 13)	-2512.0	NR_045627	73600.0	Mm.475134	NR_045627	ENSMUSG00000100599	1700120C14Rik	-	RIKEN cDNA 1700120C14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28732912-4	chr7	28732813	28733013	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310687, intron 3 of 6)	intron (NM_001310687, intron 3 of 6)	7908.0	NM_001360254	24030.0	Mm.358650	NM_011885	ENSMUSG00000045948	Mrps12	AI327385|Rpms12|rps12	mitochondrial ribosomal protein S12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133205484-2	chr4	133205399	133205599	+	724.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	7037.0	NM_008154	14748.0	Mm.4721	NM_008154	ENSMUSG00000049649	Gpr3	Gpcr20|Gpcr21|Gpcr3	G-protein coupled receptor 3	protein-coding	1.1435095907408	1.09077020994819	1.05698314769185	1.70707430312987	0.991228942635002	2.13752302244412	0.834525015435067	1.61265926808219	0.775999585813195	0.545274102385659	0.956332845226679
Merged-chr12-80001944-1	chr12	80001844	80002044	+	617.0	f0_balb.idr	Intergenic	Intergenic	-65680.0	NR_131074	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-139368764-1	chr4	139368664	139368864	+	617.0	f1_balb.idr	intron (NM_146157, intron 18 of 23)	B3A|SINE|B2	-11895.0	NM_001160319	69116.0	Mm.271956	NM_001160319	ENSMUSG00000066036	Ubr4	1810009A16Rik|A930005E13Rik|D930005K06Rik|Gm1032|Gm1666|N28143|RBAF600|Zubr1|mKIAA0462|p600	ubiquitin protein ligase E3 component n-recognin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-90191027-2	chr9	90190927	90191127	+	642.166687	f1_balb.idr|f1_c57bl6.idr	exon (NM_001326294, exon 14 of 23)	exon (NM_001326294, exon 14 of 23)	28049.0	NM_001311115	108153.0	Mm.102141	NM_001003911	ENSMUSG00000032363	Adamts7	ADAM-TS7|ADAMTS7B	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-47105978-4	chr13	47105881	47106081	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025900, intron 1 of 10)	CpG	240.0	NM_025900	110052.0	Mm.131150	NM_025900	ENSMUSG00000021377	Dek	1810019E15Rik|D13H6S231E	DEK oncogene (DNA binding)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81530608-2	chr10	81530508	81530708	+	853.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010301, exon 7 of 7)	3' UTR (NM_010301, exon 7 of 7)	-6383.0	NM_010304	14676.0	Mm.1546	NM_010304	ENSMUSG00000034792	Gna15	G[a]15|Galpha15	guanine nucleotide binding protein, alpha 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-137778830-4	chr5	137778675	137778875	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356989)	promoter-TSS (NM_001356989)	-129.0	NM_001356989	69871.0	Mm.276058	NM_027242	ENSMUSG00000029725	Ppp1r35	2010007H12Rik|2010011D20Rik|AL024004	protein phosphatase 1, regulatory subunit 35	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-56763849-3	chr19	56763763	56763963	+	788.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41491.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-78483588-2	chr9	78483488	78483688	+	789.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-1864.0	NM_010106	13627.0	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-13249125-4	chr12	13248979	13249179	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134040)	promoter-TSS (NM_134040)	95.0	NM_134040	104721.0	Mm.251255	NM_134040	ENSMUSG00000037149	Ddx1	AA409185|DBP-RB	DEAD (Asp-Glu-Ala-Asp) box polypeptide 1	protein-coding	2.00155595816782	1.56752734595597	2.17166438118047	2.32370332364644	1.89965236013246	2.84978054108053	2.18890617102234	1.49332689521348	0.399025390280793	0.674132443738403	0.99440487726309
Merged-chr7-6173293-3	chr7	6173131	6173331	+	913.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028316, intron 1 of 3)	intron (NM_028316, intron 1 of 3)	718.0	NM_001146024	72667.0	Mm.274089	NM_028316	ENSMUSG00000044876	Zfp444	2810031J10Rik|6230401O10Rik|mFLJ00134	zinc finger protein 444	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-74385521-2	chr1	74385421	74385621	+	590.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_013612, exon 15 of 15)	3' UTR (NM_013612, exon 15 of 15)	-6088.0	NM_153088	227292.0	Mm.165042	NM_153088	ENSMUSG00000026176	Ctdsp1	GIP|NLIIF|Nif3|SCP1	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-72208679-4	chr5	72208572	72208772	+	930.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_003966, intron 1 of 22)	intron (NR_003966, intron 1 of 22)	5329.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-79210135-3	chr8	79210040	79210240	+	969.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_026315)	TTS (NM_026315)	38443.0	NM_026315	67687.0	Mm.178707	NM_026315	ENSMUSG00000031682	1700011L22Rik	-	RIKEN cDNA 1700011L22 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71096706-4	chr17	71096604	71096804	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083934, intron 21 of 36)	intron (NM_001083934, intron 21 of 36)	77147.0	NM_001083934	17929.0	Mm.4103	NM_010867	ENSMUSG00000024049	Myom1	D430047A17Rik	myomesin 1	protein-coding	4.93406656908874	5.47609379852057	4.37599913284989	5.03823432480544	4.51309875849474	5.59577816445368	4.14662981401124	4.95819436120246	-0.122116305767655	0.756601219746832	0.998431161219273
Merged-chr19-3895292-1	chr19	3895192	3895392	+	575.0	f1_c57bl6.idr	TTS (NM_013490)	TTS (NM_013490)	9938.0	NM_016921	27060.0	Mm.271689	NM_016921	ENSMUSG00000001750	Tcirg1	ATP6N1C|ATP6a3|Atp6i|OC-116|OPTB1|Stv1|TIRC7|Vph1|oc	T cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 protein A3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-113187988-2	chr7	113187839	113188039	+	780.5	f0_balb.idr|f1_balb.idr	Intergenic	URR1B|DNA|hAT-Charlie	-19526.0	NM_001243048	11865.0	Mm.33970	NM_007489	ENSMUSG00000055116	Arntl	Arnt3|BMAL1b|Bmal1|MOP3|bHLHe5|bmal1b'	aryl hydrocarbon receptor nuclear translocator-like	protein-coding	1.09748873449346	0.831063735895953	1.32803073987728	1.40749761329628	1.10584626102525	0.833915238436708	1.57781398444212	1.70598548276615	0.68862379920717	0.608537620280921	0.974576632476413
Merged-chr7-127948322-3	chr7	127948225	127948425	+	851.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-1600.0	NM_001319147	77613.0	Mm.334253	NM_001081374	ENSMUSG00000070371	Prss36	C330007D15Rik	protease, serine 36	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-109458232-3	chr8	109458145	109458345	+	944.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35782.0	NM_019938	56523.0	Mm.42166	NM_019938	ENSMUSG00000031727	Pmfbp1	1700016D22Rik|F77|Stap	polyamine modulated factor 1 binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-98654473-2	chr7	98654373	98654573	+	720.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_172280, intron 2 of 19)	intron (NM_172280, intron 2 of 19)	2096.0	NM_172280	233545.0	Mm.387819	NM_172280	ENSMUSG00000035401	Emsy	2210018M11Rik|2310016L09Rik|AU019521|AU019557	EMSY, BRCA2-interacting transcriptional repressor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-20085782-4	chr16	20085669	20085869	+	977.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11785.0	NM_029436	75785.0	Mm.392450	NM_029436	ENSMUSG00000062901	Klhl24	1110046J11Rik|4930429H24Rik|6530402O20Rik|C85082	kelch-like 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-18331806-4	chr14	18331711	18331911	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009455)	promoter-TSS (NM_009455)	33.0	NM_009455	22194.0	Mm.4429	NM_009455	ENSMUSG00000021774	Ube2e1	UbcM3|Ubce5|ubcM2	ubiquitin-conjugating enzyme E2E 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-6948564-5	chr17	6948429	6948629	+	969.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001083945)	promoter-TSS (NM_001083945)	-173.0	NM_001083945	100037282.0	Mm.29830	NM_001083945	ENSMUSG00000023806	Rsph3b	Rshl2b	radial spoke 3B homolog (Chlamydomonas)	protein-coding	0.908497449822928	0.767484027832564	1.88861427733822	0.954445282137182	1.22114156188073	1.02236650494963	2.06821757135608	0.959162435306195	0.610189896773232	0.646863213125757	0.984490176318369
Merged-chr12-102467345-2	chr12	102467253	102467453	+	612.416626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1781.0	NM_001199004	27277.0	Mm.273370	NM_013747	ENSMUSG00000021192	Golga5	Ret-II	golgi autoantigen, golgin subfamily a, 5	protein-coding	-0.0854263839284873	-0.0653889730721915	0.12510885882369	-0.0769581433588836	-0.0841609047525652	0.836709042678517	0.562790011823455	-0.0760721934063834	3.2745604426323	0.141746390180134	1
Merged-chr5-140739085-2	chr5	140738985	140739185	+	843.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_173405, intron 2 of 7)	B1_Mus1|SINE|Alu	14958.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-94392328-1	chr8	94392228	94392428	+	542.0	f1_c57bl6.idr	exon (NM_022331, exon 6 of 8)	exon (NM_022331, exon 6 of 8)	5899.0	NM_022331	64209.0	Mm.29151	NM_022331	ENSMUSG00000031770	Herpud1	Herp|Mifl|SUP	homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-38371900-4	chr3	38371802	38372002	+	980.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	112914.0	NM_001167883	99696.0	Mm.290937	NM_001033198	ENSMUSG00000044864	Ankrd50	AI662170|E430012K20Rik|mKIAA1223|mKIAA3019	ankyrin repeat domain 50	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-94618698-4	chr16	94618585	94618785	+	795.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113389, intron 2 of 11)	RSINE1|SINE|B4	7266.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-92215051-2	chr15	92214951	92215151	+	681.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358051, intron 3 of 25)	intron (NM_001358051, intron 3 of 25)	53694.0	NM_001159647	12805.0	Mm.4911	NM_007727	ENSMUSG00000055022	Cntn1	AW495098|CNTN|F3cam|usl	contactin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-64638636-3	chr14	64638538	64638738	+	774.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-13893.0	NM_001081177	16554.0	Mm.23611	NM_001081177	ENSMUSG00000060012	Kif13b	5330429L19Rik|6030414C01|AI429803|C130021D12Rik|GAKIN	kinesin family member 13B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167932798-3	chr2	167932698	167932898	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011201, intron 1 of 8)	intron (NM_011201, intron 1 of 8)	471.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-75605681-1	chr18	75605581	75605781	+	542.0	f1_balb.idr	exon (NM_201354, exon 6 of 12)	exon (NM_201354, exon 6 of 12)	91036.0	NR_045879	100038353.0	Mm.440724	NR_045879	ENSMUSG00000097712	Gm10532	-	predicted gene 10532	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25628097-2	chr7	25627997	25628197	+	564.5	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_146184, exon 1 of 1)	5' UTR (NM_146184, exon 1 of 1)	473.0	NM_146184	232984.0	Mm.192369	NM_146184	ENSMUSG00000059479	B3gnt8	B3galt7|B7galt7|BC025206	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-123171770-2	chr6	123171670	123171870	+	961.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1253.0	NM_001004159	381809.0	Mm.333372	NM_001004159	ENSMUSG00000067767	Clec4b2	Aplra1|F830043G12Rik|mDCAR1	C-type lectin domain family 4, member b2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-44458752-2	chr17	44458652	44458852	+	567.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	270180.0	NM_172621	224796.0	Mm.37666	NM_172621	ENSMUSG00000023959	Clic5	5730531E12Rik|B330005L24|Gm322|jbg|nmf318	chloride intracellular channel 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-9330322-2	chr14	9330222	9330422	+	612.18335	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-553773.0	NR_030680	100042415.0	Mm.235938	NR_030680	ENSMUSG00000089686	Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-46811629-4	chr11	46811516	46811716	+	910.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178759, intron 1 of 8)	intron (NM_178759, intron 1 of 8)	817.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-30715643-4	chr14	30715543	30715743	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166532)	promoter-TSS (NM_001166532)	28.0	NM_001166532	54650.0	Mm.294662	NM_019460	ENSMUSG00000006527	Sfmbt1	4930442N21Rik|9330180L21Rik|AA536974|Sfmbt|Smr	Scm-like with four mbt domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-75719427-2	chr3	75719327	75719527	+	564.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-63696.0	NR_040539	69193.0	Mm.374088	NR_040539	ENSMUSG00000099370	Platr10	2410007B07Rik	pluripotency associated transcript 10	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127658288-3	chr10	127658184	127658384	+	721.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009284, intron 17 of 21)	intron (NM_009284, intron 17 of 21)	8419.0	NM_001122895	17937.0	Mm.336898	NM_008668	ENSMUSG00000025402	Nab2	AI451907	Ngfi-A binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-165703234-4	chr1	165703119	165703319	+	948.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038846, intron 1 of 5)	intron (NM_001038846, intron 1 of 5)	4875.0	NM_001038846	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70468092-4	chr11	70467989	70468189	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8105.0	NM_023158	66102.0	Mm.425692	NM_023158	ENSMUSG00000018920	Cxcl16	0910001K24Rik|AV290116|BB024863|CXCL16v1|CXCL16v2|SR-PSOX|Zmynd15|b2b498Clo	chemokine (C-X-C motif) ligand 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-101974042-2	chr5	101973929	101974129	+	699.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 4 of 66)	intron (NM_172882, intron 4 of 66)	95892.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	2.29215869923305	1.38913639434324	1.86002310042546	2.54253986619008	2.85758369870231	3.2130470482987	3.54206552757965	1.58751556132039	1.72300257206793	0.051995186605787	0.333722315743348
Merged-chr11-119339874-3	chr11	119339778	119339978	+	739.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130886, intron 18 of 21)	B3|SINE|B2	15632.0	NM_018822	27029.0	Mm.103788	NM_018822	ENSMUSG00000005043	Sgsh	4632406A19Rik	N-sulfoglucosamine sulfohydrolase (sulfamidase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-87967870-4	chr11	87967779	87967979	+	914.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18706.0	NM_001168472	68097.0	Mm.246436	NM_026556	ENSMUSG00000020483	Dynll2	1700064A15Rik|6720463E02Rik|C87222|DLC8|DLC8b|Dlc2	dynein light chain LC8-type 2	protein-coding	2.13430822277608	2.90393064901377	2.80759996391405	2.11945177303684	2.36042319422102	2.41001838202766	1.66156283037681	1.98390967854563	-0.913205707385081	0.283819584895457	0.78716305584274
Merged-chr19-5855819-2	chr19	5855719	5855919	+	616.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026169, intron 10 of 10)	intron (NM_026169, intron 10 of 10)	-10339.0	NR_003513	66961.0	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-108913018-2	chr3	108912918	108913118	+	640.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1289.0	NM_001356292	66921.0	Mm.51049	NM_025845	ENSMUSG00000027881	Prpf38b	1110021E09Rik|AU018955	PRP38 pre-mRNA processing factor 38 (yeast) domain containing B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-121746456-2	chr11	121746356	121746556	+	977.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR72_RN|LTR|ERV1	44029.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-110680874-4	chr9	110680785	110680985	+	834.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028312, intron 1 of 6)	RMER4B|LTR|ERVK	24382.0	NM_028312	72654.0	Mm.249115	NM_028312	ENSMUSG00000019659	Ccdc12	2700094L05Rik|C76605	coiled-coil domain containing 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-73767775-2	chr18	73767675	73767875	+	623.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13296.0	NM_053255	114615.0	Mm.50642	NM_053255	ENSMUSG00000036941	Elac1	2610018O07Rik|8430417G19Rik	elaC ribonuclease Z 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-60478826-1	chr9	60478726	60478926	+	540.0	f0_balb.idr	intron (NM_001040426, intron 3 of 17)	intron (NM_001040426, intron 3 of 17)	32209.0	NM_001040426	207596.0	Mm.28791	NM_172444	ENSMUSG00000032289	Thsd4	ADAMTSL-6|ADAMTSL6|AI585901|Adamtsl4|B230114P05Rik	thrombospondin, type I, domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-86182341-1	chr10	86182241	86182441	+	540.0	f1_balb.idr	intron (NM_013722, intron 6 of 13)	intron (NM_013722, intron 6 of 13)	86487.0	NR_038024	78170.0	Mm.444790	NR_038024	ENSMUSG00000112493	4930486F22Rik	-	RIKEN cDNA 4930486F22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-100492805-1	chr12	100492705	100492905	+	686.0	f0_balb.idr	intron (NM_001033213, intron 3 of 19)	intron (NM_001033213, intron 3 of 19)	28017.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70649492-2	chr11	70649392	70649592	+	547.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_027445, exon 4 of 9)	exon (NM_027445, exon 4 of 9)	2205.0	NM_027445	70510.0	Mm.261818	NM_027445	ENSMUSG00000040746	Rnf167	0610010G05Rik|5730408C10Rik|AU019305|AV328608	ring finger protein 167	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69686651-2	chr11	69686551	69686751	+	954.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011614, exon 7 of 7)	3' UTR (NM_011614, exon 7 of 7)	-1097.0	NM_023517	69583.0	Mm.8983	NM_023517	ENSMUSG00000089669	Tnfsf13	2310026N09Rik|April|Tall2|Tnlg7b|Trdl1	tumor necrosis factor (ligand) superfamily, member 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-136736008-3	chr6	136735904	136736104	+	861.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145067, intron 12 of 25)	ORR1E|LTR|ERVL-MaLR	45738.0	NM_145067	14917.0	Mm.222729	NM_145067	ENSMUSG00000042638	Gucy2c	AI893437|GC-C|Gcc	guanylate cyclase 2c	protein-coding	1.81828398883364	1.13133141226608	1.34685408459785	1.50194297392682	2.03182223053139	2.4830574151595	2.30848739780576	1.50927673278192	1.9022652989211	0.075445796826181	0.416340925835281
Merged-chr4-126098229-1	chr4	126098129	126098329	+	709.0	f1_c57bl6.idr	3' UTR (NM_138721, exon 2 of 2)	3' UTR (NM_138721, exon 2 of 2)	1576.0	NM_138721	116748.0	Mm.41865	NM_138721	ENSMUSG00000050188	Lsm10	-	U7 snRNP-specific Sm-like protein LSM10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124813717-4	chr6	124813602	124813802	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009415, intron 1 of 6)	intron (NM_009415, intron 1 of 6)	594.0	NM_009415	21991.0	Mm.4222	NM_009415	ENSMUSG00000023456	Tpi1	AI255506|TIM|Tpi|Tpi-1	triosephosphate isomerase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-28822343-1	chr6	28822243	28822443	+	598.0	f0_balb.idr	intron (NM_019776, intron 16 of 23)	intron (NM_019776, intron 16 of 23)	9404.0	NM_138682	192198.0	Mm.443660	NM_138682	ENSMUSG00000049939	Lrrc4	MBAG1|NGL-2|NGL2|NLG-2|Nag14	leucine rich repeat containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-4368431-4	chr18	4368334	4368534	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040328, intron 3 of 3)	ORR1E|LTR|ERVL-MaLR	-7158.0	NM_001361008	67440.0	Mm.49826	NM_026157	ENSMUSG00000024234	Mtpap	0610027A18Rik|AW551379|Papd1	mitochondrial poly(A) polymerase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-117534072-4	chr12	117533952	117534152	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175930, intron 3 of 27)	CpG	17573.0	NM_175930	217944.0	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-35378829-3	chr8	35378660	35378860	+	750.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177741, intron 1 of 1)	intron (NM_177741, intron 1 of 1)	3019.0	NM_177741	244416.0	Mm.247126	NM_177741	ENSMUSG00000046794	Ppp1r3b	6430576E21|AW821953|GL|PTG	protein phosphatase 1, regulatory (inhibitor) subunit 3B	protein-coding	1.14308113705285	0.393025227884299	0.384261319891922	1.23875129182279	0.367722184401971	0.786157627792812	0.386201109892339	0.716049717122329	-1.52186104866208	0.403495956964514	1
Merged-chr9-37246631-7	chr9	37246687	37246887	+	907.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145960, intron 1 of 18)	intron (NM_001145960, intron 1 of 18)	8951.0	NM_020258	56857.0	Mm.440037	NM_020258	ENSMUSG00000032122	Slc37a2	G3PP|Slc37a1|cI-2|ci2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-62452542-2	chr10	62452442	62452642	+	667.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10B|LTR|ERVL	-2804.0	NM_181423	338359.0	Mm.235898	NM_181423	ENSMUSG00000020079	Supv3l1	6330443E10Rik	suppressor of var1, 3-like 1 (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-58497163-3	chr2	58497065	58497265	+	896.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355048, intron 3 of 10)	intron (NM_001355048, intron 3 of 10)	64245.0	NM_001355049	11477.0	Mm.689	NM_007394	ENSMUSG00000026836	Acvr1	ALK2|ActR-I|ActRIA|Acvr|Acvrlk2|Alk-2|Alk8|D330013D15Rik|SKR1|Tsk7L	activin A receptor, type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-119843625-3	chr8	119843507	119843707	+	942.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3028.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-27548278-2	chr3	27548178	27548378	+	873.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356953, intron 5 of 26)	intron (NM_001356953, intron 5 of 26)	36717.0	NR_037275	100526525.0		NR_037275	ENSMUSG00000092695	Mir3092	mir-3092|mmu-mir-3092	microRNA 3092	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-108849460-2	chr9	108849300	108849500	+	897.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001359573, exon 35 of 36)	exon (NM_001359573, exon 35 of 36)	-4643.0	NM_134420	171429.0	Mm.45201	NM_134420	ENSMUSG00000023259	Slc26a6	B930010B04Rik|CFEX|Pat-1|Pat1	solute carrier family 26, member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-36657999-1	chr8	36657899	36658099	+	626.0	f1_c57bl6.idr	intron (NM_001194940, intron 5 of 17)	intron (NM_001194940, intron 5 of 17)	-44056.0	NM_015802	50768.0	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	1.3881704497005	0.897423380643382	1.7205499769808	1.46610504681829	1.4000099311989	0.9003457992234	1.39890042447567	1.35527215440814	-0.483088776390296	0.709684106795044	0.998431161219273
Merged-chr2-144642166-3	chr2	144642076	144642276	+	834.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025314, intron 4 of 5)	intron (NM_025314, intron 4 of 5)	42223.0	NM_025314	66044.0	Mm.28109	NM_025314	ENSMUSG00000027430	Dtd1	0610006H08Rik|DTD|DUE-B|Hars2	D-tyrosyl-tRNA deacylase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-104281916-4	chr9	104281811	104282011	+	917.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18981.0	NM_001163026	235567.0	Mm.217256	NM_001163026	ENSMUSG00000032560	Dnajc13	D030002L11Rik|Gm1124|RME-8|Rme8|mKIAA0678	DnaJ heat shock protein family (Hsp40) member C13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94190693-1	chr10	94190593	94190793	+	591.0	f1_balb.idr	exon (NM_011629, exon 12 of 14)	exon (NM_011629, exon 12 of 14)	-8316.0	NM_025551	66414.0	Mm.27886	NM_025551	ENSMUSG00000020022	Ndufa12	2410011G03Rik|AW112974	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-67456411-2	chr17	67456311	67456511	+	576.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-101920.0	NM_001357625	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-38545258-4	chr2	38545165	38545365	+	927.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159631, intron 1 of 9)	intron (NM_001159631, intron 1 of 9)	33389.0	NM_001159631	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-79780275-4	chr10	79780153	79780353	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031380, intron 3 of 4)	intron (NM_031380, intron 3 of 4)	2979.0	NM_031380	83554.0	Mm.251710	NM_031380	ENSMUSG00000020325	Fstl3	E030038F23Rik|Flrg	follistatin-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19271812-4	chr7	19271672	19271872	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001282021)	promoter-TSS (NM_001282021)	82.0	NM_001282021	22323.0	Mm.9684	NM_009499	ENSMUSG00000030403	Vasp	-	vasodilator-stimulated phosphoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-114294383-4	chr6	114294289	114294489	+	897.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178703, intron 1 of 15)	intron (NM_178703, intron 1 of 15)	11754.0	NM_178703	232333.0	Mm.5260	NM_178703	ENSMUSG00000030310	Slc6a1	A730043E01|GABATHG|GABATR|GAT-1|Gabt|Gabt1|Gat1|XT-1|Xtrp1	solute carrier family 6 (neurotransmitter transporter, GABA), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71265828-3	chr17	71265741	71265941	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357338, intron 4 of 7)	intron (NM_001357338, intron 4 of 7)	45170.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	2.75283087455156	3.95851594256388	2.09026417914309	3.08232289947365	5.20007687560584	5.97192552529732	5.58336612049147	4.87750828719609	3.00607856316106	2.71000855553085e-10	5.13389726040934e-08
Merged-chr12-54830741-4	chr12	54830648	54830848	+	797.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32129.0	NM_007688	12632.0	Mm.276826	NM_007688	ENSMUSG00000062929	Cfl2	-	cofilin 2, muscle	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-71723162-3	chr1	71723069	71723269	+	621.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	69834.0	NR_040308	100042814.0	Mm.405775	NR_040308	ENSMUSG00000073652	Apol7d	Gm15456	apolipoprotein L 7d	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101188184-4	chr15	101188060	101188260	+	855.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007395, intron 1 of 8)	intron (NM_007395, intron 1 of 8)	-5709.0	NR_105927	102466774.0		NR_105927	ENSMUSG00000106563	Mir6962	mmu-mir-6962	microRNA 6962	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-67815622-4	chr5	67815525	67815725	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038999, intron 1 of 36)	intron (NM_001038999, intron 1 of 36)	31806.0	NM_009727	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131378178-3	chr1	131378032	131378232	+	788.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081011, intron 4 of 22)	intron (NM_001081011, intron 4 of 22)	-98569.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	1.86530626766206	2.14183663756834	1.54041812645119	0.785440099887475	0.968919149395363	1.61917932209166	0.804629545016311	0.788084341414909	-2.0096284982937	0.148522432446493	0.599721385851366
Merged-chr8-45363599-2	chr8	45363499	45363699	+	904.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153535, intron 1 of 13)	RMER10A|LTR|ERVL	18692.0	NM_153535	212326.0	Mm.51259	NM_153535	ENSMUSG00000070044	Fam149a	AW213256|mKIAA4166	family with sequence similarity 149, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-32801868-3	chr14	32801780	32801980	+	828.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163616, intron 1 of 4)	intron (NM_001163616, intron 1 of 4)	15917.0	NM_001163616	69069.0	Mm.261609	NM_001163616	ENSMUSG00000041707	1810011H11Rik	4733401I05Rik	RIKEN cDNA 1810011H11 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-7929165-2	chr5	7929065	7929265	+	638.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2B2|LINE|L1	-31307.0	NM_054098	117167.0	Mm.31403	NM_054098	ENSMUSG00000012428	Steap4	1110021O17Rik|AI481214|Tiarp|Tnfaip9	STEAP family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-20492685-4	chr9	20492587	20492787	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001110309)	promoter-TSS (NM_001110309)	59.0	NM_146221	235028.0	Mm.297660	NM_146221	ENSMUSG00000059475	Zfp426	2900057C04Rik|KRAB1|Zfo61|Zfp68-rs1|Znf426|mKIAA4237	zinc finger protein 426	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-92565052-4	chr7	92564935	92565135	+	938.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025515, intron 1 of 8)	intron (NM_025515, intron 1 of 8)	3886.0	NM_001162918	66365.0	Mm.21173	NM_025515	ENSMUSG00000030613	Ccdc90b	2310015N07Rik|C86558	coiled-coil domain containing 90B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16288049-2	chr7	16287949	16288149	+	792.625	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D11|SINE|Alu	-1254.0	NM_001136471	243846.0	Mm.482401	NM_172297	ENSMUSG00000041375	Ccdc9	2600011L02Rik	coiled-coil domain containing 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35516282-2	chr17	35516182	35516382	+	971.6666869999999	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146248)	promoter-TSS (NM_146248)	542.0	NM_001163764	106795.0	Mm.11434	NM_025674	ENSMUSG00000050410	Tcf19	5730403J10Rik|AW495861	transcription factor 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-34199784-3	chr10	34199685	34199885	+	635.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172508, intron 1 of 5)	intron (NM_172508, intron 1 of 5)	7766.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-88863947-3	chr11	88863882	88864082	+	760.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_126433, intron 3 of 4)	CpG	604.0	NM_001042541	11640.0	Mm.2969	NM_009648	ENSMUSG00000018428	Akap1	AKAP121|AKAP84|Akap|C76494|C81186|DAKAP1|S-AKAP84	A kinase (PRKA) anchor protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-27595774-2	chr15	27595674	27595874	+	597.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_020332)	TTS (NM_020332)	24280.0	NR_106065	102466808.0		NR_106065	ENSMUSG00000098416	Mir7117	Gm27729|mmu-mir-7117	microRNA 7117	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-37462935-2	chr9	37462808	37463008	+	599.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26413.0	NM_146222	235184.0	Mm.127892	NM_146222	ENSMUSG00000042138	Msantd2	2810450G17Rik|9530092B10Rik	Myb/SANT-like DNA-binding domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127577712-2	chr10	127577612	127577812	+	964.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 22 of 88)	intron (NM_008512, intron 22 of 88)	-43153.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-44238401-3	chr5	44238304	44238504	+	676.099976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11798.0	NM_173764	231225.0	Mm.30688	NM_173764	ENSMUSG00000046985	Tapt1	4932414K18Rik	transmembrane anterior posterior transformation 1	protein-coding	1.34823182663452	1.75716309642479	1.47414234239491	0.815823041601331	1.12077204110435	1.25302809139536	1.48713688404947	0.817700884490362	-0.790972685275211	0.555349699054527	0.959914380895535
Merged-chr15-62003042-4	chr15	62002928	62003128	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17687.0	NM_001177352	17869.0	Mm.2444	NM_010849	ENSMUSG00000022346	Myc	AU016757|Myc2|Niard|Nird|bHLHe39	myelocytomatosis oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-143460445-2	chr7	143460345	143460545	+	995.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001161624, exon 2 of 4)	exon (NM_001161624, exon 2 of 4)	605.0	NM_009876	12577.0	Mm.168789	NM_009876	ENSMUSG00000037664	Cdkn1c	AL024410|CDKI|Kip2|p57(kip2)|p57Kip2	cyclin-dependent kinase inhibitor 1C (P57)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-122922649-2	chr6	122922549	122922749	+	772.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_199311, intron 1 of 5)	intron (NM_199311, intron 1 of 5)	801.0	NM_199311	269799.0	Mm.297275	NM_199311	ENSMUSG00000049037	Clec4a1	BC049354|Dcir4	C-type lectin domain family 4, member a1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-33870522-4	chr2	33870405	33870605	+	860.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175184, intron 2 of 9)	intron (NM_175184, intron 2 of 9)	17441.0	NM_175184	72543.0	Mm.254914	NM_175184	ENSMUSG00000038740	Mvb12b	2610200O14Rik|2610528K11Rik|AI414895|Fam125b	multivesicular body subunit 12B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-37429884-2	chr13	37429784	37429984	+	678.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	84539.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-146642125-3	chr3	146642002	146642202	+	907.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045949, exon 1 of 4)	non-coding (NR_045949, exon 1 of 4)	170.0	NR_045949	100286843.0	Mm.475299	NR_045949	ENSMUSG00000085810	Gm16325	-	predicted gene 16325	ncRNA	0.430211442330761	0.205862734627835	0.495693601397942	0.197070489712143	0.436361238219846	0.384753111978086	0.502643906151595	0.587886891370095	1.08370186619084	0.544620792933111	1
Merged-chr16-4558728-4	chr16	4558632	4558832	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031182, intron 1 of 6)	CpG	988.0	NM_031182	83383.0	Mm.273210	NM_031182	ENSMUSG00000005718	Tfap4	AI642933|AP-4|D930048N17Rik|Tcfap4|bHLHc41	transcription factor AP4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-36608515-4	chr15	36608422	36608622	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_008774, exon 1 of 15)	5' UTR (NM_008774, exon 1 of 15)	451.0	NM_008774	18458.0	Mm.371570	NM_008774	ENSMUSG00000022283	Pabpc1	PABP|Pabp1|PabpI|Pabpl1|ePAB	poly(A) binding protein, cytoplasmic 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-81626087-1	chr9	81625987	81626187	+	587.0	f0_balb.idr	Intergenic	Intergenic	-5843.0	NR_040394	319405.0	Mm.246494	NR_040393	ENSMUSG00000097466	D430036J16Rik	-	RIKEN cDNA D430036J16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-18049350-4	chr10	18049207	18049407	+	734.1875	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	tRNA-Ala-GCY_|tRNA|tRNA	-6633.0	NM_009048	19707.0	Mm.4479	NM_009048	ENSMUSG00000019854	Reps1	BB161292	RalBP1 associated Eps domain containing protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5856842-2	chr19	5856742	5856942	+	925.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026169, intron 9 of 10)	intron (NM_026169, intron 9 of 10)	-11362.0	NR_003513	66961.0	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-95773664-4	chr15	95773565	95773765	+	967.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-17178.0	NM_175344	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-3270649-4	chr15	3270544	3270744	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009155)	promoter-TSS (NM_009155)	-123.0	NM_001042613	20363.0	Mm.392203	NM_009155	ENSMUSG00000064373	Selenop	AU018766|D15Ucla1|Se-P|Sepp1|selp	selenoprotein P	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-165708052-4	chr1	165707930	165708130	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178593)	promoter-TSS (NM_178593)	64.0	NM_001038846	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-16638491-2	chr1	16638391	16638591	+	700.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18374.0	NM_026456	67923.0	Mm.289248	NM_026456	ENSMUSG00000079658	Eloc	2610043E24Rik|2610301I15Rik|AA407206|AI987979|AW049146|Tceb1	elongin C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127026908-2	chr7	127026808	127027008	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010772)	promoter-TSS (NM_010772)	-429.0	NM_010772	17188.0	Mm.378964	NM_010772	ENSMUSG00000030678	Maz	MAZI|PUR1|Pur-1|SAF-1|SAF-2	MYC-associated zinc finger protein (purine-binding transcription factor)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-57533695-4	chr6	57533509	57533709	+	957.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175523, intron 1 of 6)	intron (NM_175523, intron 1 of 6)	1817.0	NM_175523	243382.0	Mm.396893	NM_175523	ENSMUSG00000037826	Ppm1k	2900063A19Rik|A930026L03Rik|PP2Cm	protein phosphatase 1K (PP2C domain containing)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-106371815-1	chr1	106371715	106371915	+	999.0	f0_balb.idr	intron (NM_133821, intron 12 of 16)	intron (NM_133821, intron 12 of 16)	174816.0	NR_106164	102466254.0		NR_106164	ENSMUSG00000098344	Mir3473f	Gm27846|mmu-mir-3473f	microRNA 3473f	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-23783659-4	chr5	23783560	23783760	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289780)	promoter-TSS (NM_001289780)	51.0	NM_001289780	78697.0	Mm.58660	NM_178403	ENSMUSG00000057541	Pus7	C330017I15Rik	pseudouridylate synthase 7	protein-coding	4.40340651857192	4.98254651089029	3.84551130364827	4.33465071529408	4.52121778620865	5.46630197634131	4.43284290419554	5.39009231501484	0.715730588239172	0.0776777652168749	0.424011750260266
Merged-chr4-150473036-4	chr4	150472960	150473160	+	947.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 6 of 22)	intron (NM_001085492, intron 6 of 22)	179114.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-19621920-2	chr10	19621820	19622020	+	596.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178258)	promoter-TSS (NM_178258)	-108.0	NM_178258	237310.0	Mm.331979	NM_178258	ENSMUSG00000039760	Il22ra2	CRF2-10|CRF2-s1|CRF2X|Il-22bp	interleukin 22 receptor, alpha 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78173380-1	chr15	78173280	78173480	+	848.0	f1_c57bl6.idr	intron (NM_025931, intron 1 of 6)	intron (NM_025931, intron 1 of 6)	728.0	NM_025931	67042.0	Mm.30191	NM_025931	ENSMUSG00000016637	Ift27	2600013G09Rik|Rabl4	intraflagellar transport 27	protein-coding	-0.823938902086124	-1.0595308633263	-1.07036242062388	-1.07626470234862	-0.817906882576445	-0.886753774531459	-1.06791039347268	-1.07594911660578	0.65651631932531	0.829425152722695	1
Merged-chr10-84411468-1	chr10	84411368	84411568	+	703.666687	f0_balb.idr	intron (NM_001004363, intron 1 of 6)	intron (NM_001004363, intron 1 of 6)	29003.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-115996394-4	chr6	115996188	115996388	+	743.71875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1283.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-39522041-2	chr6	39521941	39522141	+	715.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172477, intron 2 of 18)	B4A|SINE|B4	35793.0	NM_172477	209773.0	Mm.440021	NM_172477	ENSMUSG00000038456	Dennd2a	B930096L08Rik|C130031G22|mKIAA1277	DENN/MADD domain containing 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-23236972-2	chr8	23236852	23237052	+	605.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_024240, intron 2 of 7)	intron (NM_024240, intron 2 of 7)	716.0	NM_024240	109145.0	Mm.27945	NM_024240	ENSMUSG00000031546	Gins4	2810037C03Rik|4933405K01Rik|Sld5	GINS complex subunit 4 (Sld5 homolog)	protein-coding	-0.0977810112546613	-0.640100280118097	-0.643489345463267	-0.646098977299263	-0.64977895376042	-0.639335316722349	-0.1839472796963	-0.645643407029608	-0.324071321984594	0.911381361791499	1
Merged-chr10-80782795-2	chr10	80782695	80782895	+	749.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_199322, intron 12 of 27)	intron (NM_199322, intron 12 of 27)	15831.0	NM_023900	78670.0	Mm.41479	NM_023900	ENSMUSG00000035278	Plekhj1	9530063M10Rik	pleckstrin homology domain containing, family J member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-65863014-2	chr5	65862914	65863114	+	778.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081105)	promoter-TSS (NM_001081105)	-555.0	NM_001081105	74734.0	Mm.20323	NM_001081105	ENSMUSG00000029204	Rhoh	5830400A04Rik|AU019774|Arhh	ras homolog family member H	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-125641865-2	chr8	125641765	125641965	+	644.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1E1|LTR|ERVL-MaLR	-27953.0	NM_028908	74393.0	Mm.41709	NM_028908	ENSMUSG00000050930	Map10	4933403G14Rik|AI835009|mKIAA1383	microtubule-associated protein 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-66342978-2	chr7	66342878	66343078	+	765.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146191, intron 2 of 33)	intron (NM_146191, intron 2 of 33)	38746.0	NR_106024	102465640.0		NR_106024	ENSMUSG00000098353	Mir7057	Gm27550|mmu-mir-7057	microRNA 7057	ncRNA	1.44793983383337	1.50683550706507	1.27849987224282	2.33259811678234	0.790006478244629	2.03936644997711	0.83567109571555	0.817313923184226	-1.37833823127574	0.308732931682431	0.809295017856989
Merged-chr7-25680265-4	chr7	25680147	25680347	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001362154)	promoter-TSS (NM_001362154)	-533.0	NM_001362154	232987.0	Mm.22849	NM_172148	ENSMUSG00000063439	B9d2	stumpy	B9 protein domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80350457-4	chr10	80350363	80350563	+	988.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 1 of 4)	intron (NR_038088, intron 1 of 4)	-2015.0	NR_104340	66548.0	Mm.71891	NM_025629	ENSMUSG00000043822	Adamtsl5	2010109H09Rik|Thsd6	ADAMTS-like 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-155342915-2	chr2	155342815	155343015	+	770.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001004721, intron 2 of 11)	ID_B1|SINE|B4	-13902.0	NR_030475	735287.0		NR_030475	ENSMUSG00000076216	Mir695	Mirn695|mmu-mir-695	microRNA 695	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-29277341-2	chr6	29277241	29277441	+	643.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D11|SINE|Alu	-3800.0	NM_001101486	245884.0	Mm.33683	NM_001101486	ENSMUSG00000079652	Fam71f2	AI507611|GARI	family with sequence similarity 71, member F2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-75794463-4	chr7	75794340	75794540	+	814.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14-int|LTR|ERV1	-53898.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141620513-2	chr4	141620413	141620613	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001013780, exon 5 of 5)	exon (NM_001013780, exon 5 of 5)	-1880.0	NR_151462	213989.0	Mm.34891	NM_145987	ENSMUSG00000043085	Tmem82	-	transmembrane protein 82	protein-coding	0.916550610604916	0.0905890843320373	0.0835044438336157	0.0780010162353714	0.931815768694689	0.0921787686462293	0.283428761979826	0.0789648726593596	0.253679736403486	0.906012823899305	1
Merged-chr2-120629770-2	chr2	120629679	120629879	+	656.5	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	20184.0	NM_001290807	66296.0	Mm.221900	NM_025475	ENSMUSG00000027285	Haus2	1700101G24Rik|2410007P03Rik|AU020217|Cep27	HAUS augmin-like complex, subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-106632139-1	chr1	106632039	106632239	+	645.0	f0_balb.idr	intron (NM_009741, intron 1 of 1)	intron (NM_009741, intron 1 of 1)	82151.0	NM_009741	12043.0	Mm.257460	NM_009741	ENSMUSG00000057329	Bcl2	AW986256|Bcl-2|C430015F12Rik|D630044D05Rik|D830018M01Rik	B cell leukemia/lymphoma 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-86607656-2	chr6	86607556	86607756	+	567.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20518.0	NM_026414	67855.0	Mm.183043	NM_026414	ENSMUSG00000033508	Asprv1	2300003P22Rik|AA986851|SASP|SASPase|Taps	aspartic peptidase, retroviral-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5946264-4	chr19	5946159	5946359	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164057, intron 13 of 17)	intron (NM_001164057, intron 13 of 17)	17947.0	NM_001164057	18969.0	Mm.209931	NM_008893	ENSMUSG00000024833	Pola2	AI573378	polymerase (DNA directed), alpha 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-155402154-3	chr2	155402016	155402216	+	865.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019825, intron 11 of 13)	intron (NM_019825, intron 11 of 13)	20260.0	NM_178111	68728.0	Mm.293605	NM_178111	ENSMUSG00000038375	Trp53inp2	1110029F20Rik|Tp53inp2	transformation related protein 53 inducible nuclear protein 2	protein-coding	2.43386355085983	1.89741910828746	1.61947509811633	1.78403137139656	2.1438416743996	3.02550181927122	3.06886609203926	2.37535568164092	1.62494113510993	0.059126229684002	0.359491471494251
Merged-chr10-79726336-4	chr10	79726237	79726437	+	951.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008226, intron 3 of 7)	intron (NM_008226, intron 3 of 7)	9703.0	NM_008226	15166.0	Mm.12956	NM_008226	ENSMUSG00000020331	Hcn2	BCNG2|HAC1|trls	hyperpolarization-activated, cyclic nucleotide-gated K+ 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-25312066-2	chr10	25311974	25312174	+	668.5	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12911.0	NM_018747	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	1.75576776206248	3.49717490436989	1.02994061727521	2.55096632048746	1.43344199522939	2.19052728222537	1.57968818374381	1.00430261695317	-2.00301223758844	0.0675747607485487	0.390097867830591
Merged-chr17-88128833-2	chr17	88128733	88128933	+	822.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001190356, intron 1 of 1)	intron (NM_001190356, intron 1 of 1)	3321.0	NM_001190356	225058.0	Mm.312053	NM_001190356		Gm4832	EG225058	predicted gene 4832	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-121516432-4	chr10	121516323	121516523	+	995.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40173.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67550270-2	chr10	67550170	67550370	+	668.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1315.0	NM_001005419	211488.0	Mm.297250	NM_001005419	ENSMUSG00000057134	Ado	Gm237	2-aminoethanethiol (cysteamine) dioxygenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44360103-4	chr7	44360022	44360222	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_027049)	TTS (NM_027049)	14908.0	NM_027049	69349.0	Mm.358922	NM_027049	ENSMUSG00000008028	1700008O03Rik	-	RIKEN cDNA 1700008O03 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85219352-4	chr12	85219226	85219426	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145445)	promoter-TSS (NM_145445)	-155.0	NM_145445	217715.0	Mm.29041	NM_145445	ENSMUSG00000004788	Eif2b2	EIF-2Bbeta|EIF2B	eukaryotic translation initiation factor 2B, subunit 2 beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-83303158-2	chr4	83303058	83303258	+	758.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027238, intron 1 of 19)	intron (NM_027238, intron 1 of 19)	21031.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102498693-8	chr12	102498531	102498731	+	814.866638	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001199004)	TTS (NM_001199004)	28721.0	NM_013747	27277.0	Mm.273370	NM_013747	ENSMUSG00000021192	Golga5	Ret-II	golgi autoantigen, golgin subfamily a, 5	protein-coding	2.74580664870912	2.84998942253574	2.75565981283927	3.22403442715395	3.22291711506161	3.28354379726256	2.65032263382758	2.69282061819381	0.159550713479291	0.807464087156967	0.998431161219273
Merged-chr7-29180691-4	chr7	29180631	29180831	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026545)	promoter-TSS (NM_026545)	-58.0	NM_026545	57296.0	Mm.273152	NM_026545	ENSMUSG00000030591	Psmd8	6720456J22Rik|AA407360|AL033291|AL033322|AL033323|C76433	proteasome (prosome, macropain) 26S subunit, non-ATPase, 8	protein-coding	6.45781355068724	6.43793708928307	6.92304376741795	6.40047124917575	6.57695116175849	6.67447256730549	6.86996971787774	6.90354134287433	0.204320910004377	0.301805379680311	0.803608731780819
Merged-chr14-55554872-2	chr14	55554772	55554972	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5157.0	NR_037572	28199.0	Mm.11535	NM_133734	ENSMUSG00000022214	Dcaf11	0710008A13Rik|C76035|D14Ucla1|Dacf11|GLO14|Wdr23	DDB1 and CUL4 associated factor 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-119426618-4	chr8	119426505	119426705	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10557.0	NM_027950	71839.0	Mm.272357	NM_027950	ENSMUSG00000074063	Osgin1	1700012B18Rik|Okl38	oxidative stress induced growth inhibitor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-59540318-4	chr11	59540197	59540397	+	998.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1272.0	NM_001359638	216799.0	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95627282-2	chr3	95627182	95627382	+	563.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001026212, intron 2 of 2)	B1F1|SINE|Alu	2302.0	NM_001026212	56205.0	Mm.241365	NM_019561	ENSMUSG00000038619	Ensa	1700020C18Rik|2610007F17Rik|AI451924	endosulfine alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131055238-2	chr1	131055138	131055338	+	617.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008551, intron 9 of 9)	intron (NM_008551, intron 9 of 9)	35393.0	NM_010548	16153.0	Mm.874	NM_010548	ENSMUSG00000016529	Il10	CSIF|Il-10	interleukin 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-62936141-3	chr9	62936132	62936332	+	720.694458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019663, intron 2 of 13)	RSINE1|SINE|B4	44647.0	NM_019663	56469.0	Mm.431253	NM_019663	ENSMUSG00000032405	Pias1	2900068C24Rik|Ddxbp1|GBP	protein inhibitor of activated STAT 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-53422514-3	chr19	53422427	53422627	+	788.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31893.0	NM_172429	76479.0	Mm.313687	NM_172429	ENSMUSG00000025024	Smndc1	-	survival motor neuron domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-70848425-4	chr17	70848367	70848567	+	998.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164074, intron 1 of 2)	intron (NM_001164074, intron 1 of 2)	1323.0	NM_001164076	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-11226040-2	chr3	11225940	11226140	+	730.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	618319.0	NR_040751	100038545.0	Mm.388494	NR_040751	ENSMUSG00000104015	Gm10745	-	predicted gene 10745	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-47005372-2	chr7	47005272	47005472	+	925.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175318, intron 1 of 5)	ORR1D1|LTR|ERVL-MaLR	3042.0	NM_175318	101685.0	Mm.155687	NM_175318	ENSMUSG00000049516	Spty2d1	5830435K17Rik|AI852426|P16H6	SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-121636397-4	chr9	121636281	121636481	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026915, intron 1 of 5)	intron (NM_026915, intron 1 of 5)	5212.0	NM_026915	69032.0	Mm.33351	NM_026915	ENSMUSG00000032530	Lyzl4	1810009N24Rik|AI504271|Lyc4|Lyza	lysozyme-like 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-21852121-4	chr14	21851825	21852025	+	882.2083130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176925, intron 2 of 2)	intron (NM_176925, intron 2 of 2)	-3015.0	NM_026965	69156.0	Mm.11827	NM_026965	ENSMUSG00000021773	Comtd1	1810030M08Rik|MT773	catechol-O-methyltransferase domain containing 1	protein-coding	-0.0476939630118645	-0.20033010831751	1.00330846853477	-0.212696388858514	0.106651497787865	-0.198776921204444	-0.20573559148687	-0.211745261317376	-2.58392854092448	0.257011316394212	1
Merged-chr2-109918760-3	chr2	109918662	109918862	+	647.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172671, intron 1 of 17)	intron (NM_172671, intron 1 of 17)	1115.0	NM_172671	107515.0	Mm.277351	NM_172671	ENSMUSG00000050199	Lgr4	9130225G07|A330106J01Rik|A930009A08Rik|Gpr48	leucine-rich repeat-containing G protein-coupled receptor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-47561745-2	chr6	47561645	47561845	+	951.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001146689, intron 3 of 19)	intron (NM_001146689, intron 3 of 19)	33285.0	NM_001146689	14056.0	Mm.246688	NM_007971	ENSMUSG00000029687	Ezh2	Enx-1|Enx1h|KMT6|mKIAA4065	enhancer of zeste 2 polycomb repressive complex 2 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-103746935-4	chr5	103746839	103747039	+	966.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7223.0	NM_133919	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-132843582-2	chr2	132843482	132843682	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_025676, exon 18 of 18)	3' UTR (NM_025676, exon 18 of 18)	-3084.0	NM_001024385	66586.0	Mm.357342	NM_025646	ENSMUSG00000027357	Crls1	0610009I22Rik|4930557M15Rik|5730490M08Rik	cardiolipin synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126897520-4	chr7	126897406	126897606	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026827, intron 1 of 5)	intron (NM_026827, intron 1 of 5)	772.0	NM_026827	68742.0	Mm.248646	NM_026827	ENSMUSG00000060538	Tmem219	1110032O16Rik|2900045G02Rik|IGFBP-3R	transmembrane protein 219	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-58953929-4	chr1	58953829	58954029	+	848.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172406, intron 1 of 15)	intron (NM_172406, intron 1 of 15)	19553.0	NM_172406	70827.0	Mm.222887	NM_172406	ENSMUSG00000026028	Trak2	2900022D04Rik|4733401O11Rik|AI480836|AW046271|Als2cr3|CALS-C|GRIF-1|GRIF1|OIP98|mKIAA0549	trafficking protein, kinesin binding 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-47648489-2	chr6	47648389	47648589	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	6605.0	NR_002841	19799.0		NR_002841		Rn4.5s	-	4.5S RNA	rRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-92716161-2	chr16	92716061	92716261	+	666.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111022, intron 2 of 6)	intron (NM_001111022, intron 2 of 6)	-18832.0	NM_009821	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-95279040-3	chr10	95278939	95279139	+	943.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001330138, intron 2 of 2)	MTD|LTR|ERVL-MaLR	44670.0	NM_001330138	12905.0	Mm.473739	NM_009950	ENSMUSG00000045867	Cradd	RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-105059059-4	chr3	105058944	105059144	+	948.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5898.0	NM_030249	80281.0	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28982687-1	chr7	28982587	28982787	+	602.0	f0_c57.idr	promoter-TSS (NM_001285943)	promoter-TSS (NM_001285943)	-167.0	NM_008279	26411.0	Mm.148278	NM_008279	ENSMUSG00000037337	Map4k1	Hpk1|mHPK1	mitogen-activated protein kinase kinase kinase kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-4470479-2	chr7	4470379	4470579	+	847.3333130000001	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_028416, exon 1 of 1)	non-coding (NR_028416, exon 1 of 1)	405.0	NR_028416	320749.0	Mm.396688	NR_028416		D630041G03Rik	-	RIKEN cDNA D630041G03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132310062-4	chr4	132309963	132310163	+	876.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_034046)	promoter-TSS (NR_034046)	110.0	NR_034050	100217418.0	Mm.258912	NR_034050	ENSMUSG00000064604	Snora44	MBI-64	small nucleolar RNA, H/ACA box 44	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-21711686-4	chr5	21711591	21711791	+	878.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10069.0	NM_001359965	242864.0	Mm.153292	NM_178728	ENSMUSG00000044968	Napepld	A530089G06|Mbldc1|NAPE-PLD	N-acyl phosphatidylethanolamine phospholipase D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99535652-4	chr7	99535528	99535728	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_177231, exon 1 of 16)	5' UTR (NM_177231, exon 1 of 16)	142.0	NM_177231	109689.0	Mm.260193	NM_177231	ENSMUSG00000018909	Arrb1	1200006I17Rik|AW208571|G430100A01Rik	arrestin, beta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97360181-3	chr6	97360087	97360287	+	717.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 6 of 23)	intron (NM_145148, intron 6 of 23)	99099.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-102866651-4	chr14	102866540	102866740	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	115992.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-51315722-4	chr13	51315629	51315829	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-92889.0	NM_010101	13610.0	Mm.136736	NM_010101	ENSMUSG00000067586	S1pr3	AI132464|Edg3|Lpb3|S1p3	sphingosine-1-phosphate receptor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-86690477-2	chr11	86690377	86690577	+	732.25	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_175004, exon 3 of 3)	3' UTR (NM_175004, exon 3 of 3)	6396.0	NM_001098810	217057.0	Mm.24868	NM_175004	ENSMUSG00000072582	Ptrh2	A230072I16Rik|Bit1|CGI-147	peptidyl-tRNA hydrolase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-79661285-3	chr14	79661215	79661415	+	891.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010701, intron 2 of 6)	CpG	868.0	NM_001310655	16840.0	Mm.46561	NM_010701	ENSMUSG00000022025	Cnmd	Bricd3|ChM-I|Chmd|Lect1	chondromodulin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-140572585-4	chr4	140572496	140572696	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001112723, intron 14 of 26)	intron (NM_001112723, intron 14 of 26)	76160.0	NM_001112723	72754.0	Mm.29329	NM_172415	ENSMUSG00000040964	Arhgef10l	2810441C07Rik	Rho guanine nucleotide exchange factor (GEF) 10-like	protein-coding	2.76557450664677	3.99760613551204	4.36830377168532	3.16911310998974	4.25493231255611	3.87830230719354	4.02745113660084	3.55939247913121	0.336192298988258	0.534628360602624	0.95286627222167
Merged-chr2-124790271-4	chr2	124790177	124790377	+	984.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	136696.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81694147-4	chr15	81694055	81694255	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001164320, exon 3 of 6)	exon (NM_001164320, exon 3 of 6)	3132.0	NM_001164320	214685.0	Mm.393287	NM_001164320	ENSMUSG00000063765	Chadl	AY100452|D930017K21Rik	chondroadherin-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-68765302-2	chr16	68765202	68765402	+	648.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	1035079.0	NR_130991	78110.0	Mm.211406	NR_130991	ENSMUSG00000107073	4930428D20Rik	Gm43265	RIKEN cDNA 4930428D20 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-109040333-2	chr8	109040233	109040433	+	568.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34889.0	NR_126329	628686.0	Mm.203332	NR_126329	ENSMUSG00000097393	D030068K23Rik	-	RIKEN cDNA D030068K23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-117635843-3	chr14	117635744	117635944	+	803.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011821, intron 4 of 8)	B4|SINE|B4	318003.0	NR_105747	102465148.0		NR_105747	ENSMUSG00000098648	Mir6239	Gm28025|mmu-mir-6239	microRNA 6239	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-57124086-2	chr6	57123986	57124186	+	773.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur2|LINE|L1	10661.0	NM_053231	113858.0	Mm.436285	NM_053231	ENSMUSG00000115181	Vmn1r10	V1rc1	vomeronasal 1 receptor 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-148554893-4	chr5	148554778	148554978	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2090.0	NM_001359199	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	3.19871474450494	2.89763193109726	4.16931125668046	2.93921850595125	2.45794843649636	1.99031237395435	3.24828678457877	3.52481953218032	-0.763865204103493	0.276314349418893	0.780449508237767
Merged-chr18-90129875-2	chr18	90129775	90129975	+	588.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR11A|LTR|ERVK	-360739.0	NM_001039173	623279.0	Mm.447164	NM_001039173	ENSMUSG00000073514	Dok6	Dok-6	docking protein 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99590831-3	chr15	99590737	99590937	+	794.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009701)	promoter-TSS (NM_009701)	-191.0	NM_009701	11830.0	Mm.45580	NM_009701	ENSMUSG00000044217	Aqp5	-	aquaporin 5	protein-coding	1.95901878819077	1.18706358108388	1.75231974214078	2.06770169973987	1.87381593420289	1.19233411170917	2.42742633822703	2.17697154358088	0.580592123111042	0.59504965724291	0.971032388302052
Merged-chr16-38451860-5	chr16	38451658	38451858	+	737.08667	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007414, intron 1 of 3)	intron (NM_007414, intron 1 of 3)	931.0	NM_007414	11544.0	Mm.20047	NM_007414	ENSMUSG00000002844	Adprh	Arh1	ADP-ribosylarginine hydrolase	protein-coding	-0.85899884913904	-0.221460368678537	-0.852478112284837	-0.854929856228682	-0.579128496032964	-0.844249204911309	-0.851777156584519	-0.854501574186478	-1.3284213184086	0.662269550112928	1
Merged-chr4-3066290-2	chr4	3066190	3066390	+	868.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-105793.0	NM_001167534	100312470.0	Mm.480297	NM_001167534	ENSMUSG00000115072	Vmn1r2	Gm11776	vomeronasal 1 receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-80316166-1	chr2	80316066	80316266	+	981.0	f1_c57bl6.idr	intron (NM_024181, intron 1 of 22)	intron (NM_024181, intron 1 of 22)	700.0	NM_024181	66861.0	Mm.21762	NM_024181	ENSMUSG00000027006	Dnajc10	1200006L06Rik|D2Ertd706e|ERdj5|JPDI	DnaJ heat shock protein family (Hsp40) member C10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-99061691-3	chr4	99061576	99061776	+	753.866638	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026082, intron 11 of 47)	intron (NM_026082, intron 11 of 47)	30722.0	NM_013913	30924.0	Mm.28341	NM_013913	ENSMUSG00000028553	Angptl3	hypl	angiopoietin-like 3	protein-coding	1.25645570693548	3.68107736997073	3.09556870809384	2.42542679713157	2.66678409359835	4.31279719465275	2.67263090358423	1.65259794716963	0.49420867913849	0.710385505741286	0.998431161219273
Merged-chr12-69333697-4	chr12	69333579	69333779	+	897.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025441, intron 16 of 32)	B3|SINE|B2	23497.0	NM_025441	66244.0	Mm.46705	NM_025441	ENSMUSG00000020982	Nemf	1500011I12Rik|4933405E14Rik|Sdccag1	nuclear export mediator factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-37320687-2	chr10	37320587	37320787	+	619.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-181761.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-55594150-3	chr1	55594057	55594257	+	865.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114663, intron 1 of 5)	L1_Mus2|LINE|L1	188211.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-120503621-4	chr5	120503535	120503735	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023625)	promoter-TSS (NM_023625)	-12.0	NM_023625	71772.0	Mm.100065	NM_023625	ENSMUSG00000029598	Plbd2	1300012G16Rik|AU019810|P76	phospholipase B domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-25092695-8	chr12	25092606	25092806	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3386.0	NM_010496	15902.0	Mm.34871	NM_010496	ENSMUSG00000020644	Id2	AI255428|C78922|Idb2|bHLHb26	inhibitor of DNA binding 2	protein-coding	5.80827043968066	4.95755670777421	6.00585389327555	4.84597659024076	5.59249595228528	4.99135541452612	4.78993299858235	5.60167656616338	-0.234208290060135	0.500335551770339	0.938059363548374
Merged-chr5-43914348-2	chr5	43914248	43914448	+	591.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45539.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-8844220-2	chr4	8844120	8844320	+	802.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355382, intron 18 of 36)	intron (NM_001355382, intron 18 of 36)	92896.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-149643585-1	chr4	149643485	149643685	+	775.5	f1_balb.idr	exon (NM_001290989, exon 12 of 18)	exon (NM_001290989, exon 12 of 18)	11982.0	NR_105990	102465983.0		NR_105990	ENSMUSG00000098580	Mir7023	Gm27912|mmu-mir-7023	microRNA 7023	ncRNA	-2.18243820993087	-2.15538464093652	-2.16356586349869	-2.17028616330028	-2.18053909940952	-2.15361173587851	-2.16171381403791	-2.0403552525549	0.759018020146679	0.829933115115583	1
Merged-chr19-11344374-2	chr19	11344274	11344474	+	627.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8228.0	NM_027836	109225.0	Mm.491251	NM_027836	ENSMUSG00000024672	Ms4a7	9130422I10Rik|A430103C15Rik|CD20l4|CFFMA	membrane-spanning 4-domains, subfamily A, member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-36363827-3	chr12	36363722	36363922	+	771.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17628.0	NM_001289504	75847.0	Mm.261764	NM_178629	ENSMUSG00000043153	Ispd	4930579E17Rik|AV040780	isoprenoid synthase domain containing	protein-coding	0.124167273954776	0.0716900071394864	-0.107583341042903	-0.110680844755039	0.130184727797938	0.0760502863732836	-0.106694845097171	0.380613579704734	1.27162330349962	0.545564457006857	1
Merged-chr16-91485086-4	chr16	91484985	91485185	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010508)	promoter-TSS (NM_010508)	-130.0	NM_010508	15975.0	Mm.502	NM_010508	ENSMUSG00000022967	Ifnar1	Ifar|Ifnar|Ifrc|Infar	interferon (alpha and beta) receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-58713200-4	chr1	58713088	58713288	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009805)	promoter-TSS (NM_009805)	-98.0	NM_207653	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-128711605-4	chr4	128711490	128711690	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018774, intron 6 of 14)	intron (NM_018774, intron 6 of 14)	-15981.0	NM_001195083	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-31175905-2	chr6	31175805	31176005	+	686.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_110470, intron 2 of 2)	intron (NR_110470, intron 2 of 2)	42569.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-79635238-4	chr2	79635146	79635346	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080558)	promoter-TSS (NM_080558)	-179.0	NM_080558	70599.0	Mm.272881	NM_080558	ENSMUSG00000027007	Ssfa2	5730488C15Rik|CS-1|CS1|KRAP|SPAG13|mKIAA1927	sperm specific antigen 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-54562952-2	chr8	54562852	54563052	+	707.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029569, intron 1 of 6)	intron (NM_029569, intron 1 of 6)	12621.0	NM_029569	76294.0	Mm.33171	NM_029569	ENSMUSG00000031519	Asb5	1110018D09Rik	ankyrin repeat and SOCs box-containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-144580185-6	chr3	144580094	144580294	+	842.366699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053102, intron 2 of 4)	B1F1|SINE|Alu	9767.0	NM_053102	93684.0	Mm.29812	NM_053102	ENSMUSG00000037072	Selenof	9430015P09Rik|Sep15	selenoprotein F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-58272649-4	chr15	58272527	58272727	+	901.525024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51542.0	NM_177755	268807.0	Mm.124498	NM_177755	ENSMUSG00000022357	Klhl38	8230402K04Rik	kelch-like 38	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-98993414-4	chr6	98993322	98993522	+	980.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001197321, intron 8 of 17)	intron (NM_001197321, intron 8 of 17)	34876.0	NM_001197322	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-94666665-4	chr8	94666572	94666772	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024191)	promoter-TSS (NM_024191)	72.0	NM_024191	107566.0	Mm.393247	NM_024191	ENSMUSG00000031776	Arl2bp	1700010P10Rik|1700027H16Rik|6330544B05Rik|AI482273|AI849834|BART|Bart1	ADP-ribosylation factor-like 2 binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-45180900-2	chr9	45180752	45180952	+	605.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_145403, intron 5 of 12)	intron (NM_145403, intron 5 of 12)	-14914.0	NM_001198971	408059.0	Mm.249297	NM_001198971	ENSMUSG00000091996	BC049352	SMIM35	cDNA sequence BC049352	protein-coding	0.776685539542525	1.0382957622425	0.508427415989849	0.826464049043792	0.491554469399044	1.17650244905454	1.22999760724976	0.50268031820659	0.533396154337639	0.746046941355529	1
Merged-chr3-7496750-4	chr3	7496647	7496847	+	980.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6679.0	NM_173181	67306.0	Mm.332366	NM_173181	ENSMUSG00000043542	Zc2hc1a	3110050N22Rik|AI790358|AU023959|Fam164a	zinc finger, C2HC-type containing 1A	protein-coding	1.87252462138528	1.76774614660355	2.92190260660458	1.97278776688442	1.42151245373565	2.1169951051408	2.04601334352513	2.22224420369427	-0.616259562864844	0.517207796940769	0.947641799425091
Merged-chr9-58583366-6	chr9	58583263	58583463	+	782.633301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151824, intron 1 of 7)	intron (NR_151824, intron 1 of 7)	1123.0	NM_001357751	20320.0	Mm.15125	NM_009145	ENSMUSG00000032336	Nptn	AW554172|SDR-1|Sdfr1	neuroplastin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125008950-4	chr6	125008880	125009080	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175557)	promoter-TSS (NM_175557)	-258.0	NM_001252083	269800.0	Mm.108677	NM_175557	ENSMUSG00000038346	Zfp384	BB163993|C130073D16Rik|Ciz|NP|Nmp4	zinc finger protein 384	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-120580520-2	chr2	120580420	120580620	+	998.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009222, intron 1 of 7)	intron (NM_009222, intron 1 of 7)	12849.0	NM_009222	20619.0	Mm.245715	NM_009222	ENSMUSG00000027287	Snap23	23kDa|AA408749|SNAP-23|Sndt|Syndet	synaptosomal-associated protein 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-9933922-2	chr19	9933822	9934022	+	773.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34389.0	NM_016692	16319.0	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180774286-2	chr1	180774186	180774386	+	670.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4_|SINE|ID	39319.0	NM_008210	15078.0	Mm.138832	NM_008210	ENSMUSG00000060743	H3f3a	EyeLinc14|H3.3A	H3 histone, family 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-82811752-4	chr7	82811660	82811860	+	951.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	-55573.0	NM_175366	108797.0	Mm.306789	NM_175366	ENSMUSG00000057706	Mex3b	4931439A04Rik|M-04814|Rkhd3|mKIAA2009	mex3 RNA binding family member B	protein-coding	4.53848894387289	4.74558191171372	3.64727117053347	3.98202003221881	4.03680883902517	4.38034396918381	4.05937219116759	3.26614960909468	-0.414987012709217	0.378662165006809	0.871397690824179
Merged-chr10-128092550-7	chr10	128092458	128092658	+	961.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_054078)	promoter-TSS (NM_054078)	-225.0	NM_054078	116848.0	Mm.252213	NM_054078	ENSMUSG00000040054	Baz2a	AA415431|C030005G16Rik|C78388|Tip5|Walp3|mKIAA0314	bromodomain adjacent to zinc finger domain, 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69047337-2	chr11	69047237	69047437	+	570.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011496, intron 1 of 7)	intron (NM_011496, intron 1 of 7)	1700.0	NM_011496	20877.0	Mm.3488	NM_011496	ENSMUSG00000020897	Aurkb	AIM-1|AIRK2|AL022959|Aik2|Aim1|Ark2|AurB|IPL1|STK-1|Stk12|Stk5	aurora kinase B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-31180022-4	chr5	31179888	31180088	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_027901, exon 1 of 19)	5' UTR (NM_027901, exon 1 of 19)	156.0	NM_027901	71752.0	Mm.271923	NM_027901	ENSMUSG00000106864	Gtf3c2	1300004C11Rik|2610510G03Rik|AI225816|AU041069|TFIIIC110|mKIAA0011	general transcription factor IIIC, polypeptide 2, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-93944360-3	chr10	93944257	93944457	+	959.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19506.0	NR_029764	723908.0		NR_029764	ENSMUSG00000065607	Mir331	Mirn331|mmu-mir-331	microRNA 331	ncRNA	4.36041955301895	4.35719658703759	4.17213674154641	4.3211479665715	1.66885106546145	2.44439964993221	1.55944718105046	2.74681448009359	-3.4291242772535	1.12158206515184e-07	9.70438097429694e-06
Merged-chr12-108103490-2	chr12	108103390	108103590	+	645.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	75794.0	NM_028262	52690.0	Mm.159185	NM_028262	ENSMUSG00000056770	Setd3	2610102I01Rik|2610305M23Rik|6030490B17Rik|D12Ertd771e	SET domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-137705457-2	chr5	137705357	137705557	+	879.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-20704.0	NM_001303266	231801.0	Mm.260869	NM_145566	ENSMUSG00000029722	Agfg2	A630095P14Rik|Hrbl|RAB-R|RABR	ArfGAP with FG repeats 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-62186675-2	chr10	62186575	62186775	+	719.099976	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_197996, exon 8 of 8)	3' UTR (NM_197996, exon 8 of 8)	7552.0	NR_106122	102465767.0		NR_106122	ENSMUSG00000099185	Mir7662	Gm27876|mmu-mir-7662	microRNA 7662	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-64242504-4	chr9	64242408	64242608	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008927, intron 1 of 10)	MTC|LTR|ERVL-MaLR	7307.0	NM_033607	93841.0	Mm.390180	NM_033607	ENSMUSG00000035337	Uchl4	-	ubiquitin carboxyl-terminal esterase L4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117277958-4	chr10	117277852	117278052	+	961.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_017372, exon 4 of 4)	3' UTR (NM_017372, exon 4 of 4)	4320.0	NM_017372	17105.0	Mm.45436	NM_017372	ENSMUSG00000069516	Lyz2	AI326280|Lys|Lysm|Lyzf2|Lyzs|Lzm|Lzm-s1|Lzp	lysozyme 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-113437584-1	chr11	113437484	113437684	+	638.5	f0_balb.idr	intron (NM_027216, intron 5 of 9)	intron (NM_027216, intron 5 of 9)	128231.0	NM_001166503	69806.0	Mm.341021	NM_027216	ENSMUSG00000041654	Slc39a11	1810074D23Rik	solute carrier family 39 (metal ion transporter), member 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-95949566-4	chr13	95949484	95949684	+	854.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-57662.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-48545984-4	chr13	48545883	48546083	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-7711.0	NR_029725	387244.0		NR_029725	ENSMUSG00000065421	Mirlet7a-1	Let-7a|Mirnlet7a|Mirnlet7a-1|let-7a-1	microRNA let7a-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107677832-2	chr9	107677689	107677889	+	661.299988	f1_balb.idr|f1_c57bl6.idr	intron (NM_008140, intron 1 of 8)	intron (NM_008140, intron 1 of 8)	1803.0	NM_008140	14685.0	Mm.284853	NM_008140	ENSMUSG00000034837	Gnat1	Gnat-1|Ird1|Ird2|Tralpha|irdc|irdr|transducin	guanine nucleotide binding protein, alpha transducing 1	protein-coding	1.38889563238032	0.751302894214104	1.81896668221523	0.72554566106836	1.29806022892259	0.991421651075358	1.65281021172184	0.727540534025831	-0.176831225383896	0.904447451051554	0.998431161219273
Merged-chr5-24387863-3	chr5	24387702	24387902	+	812.288879	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001002897, exon 6 of 14)	exon (NM_001002897, exon 6 of 14)	4341.0	NM_001002897	213948.0	Mm.332252	NM_001002897	ENSMUSG00000038295	Atg9b	Apg912|Apg9l2|Apgdc2|Gm574|Nos3as|eONE|sONE	autophagy related 9B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-3611167-4	chr13	3611060	3611260	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134063)	promoter-TSS (NM_134063)	-52.0	NM_001360838	105203.0	Mm.221609	NM_134063	ENSMUSG00000033799	Fam208b	AI645998|Pap20|mKIAA2006	family with sequence similarity 208, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-155901511-4	chr1	155901418	155901618	+	985.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001039184, exon 24 of 38)	exon (NM_001039184, exon 24 of 38)	71737.0	NM_001039184	74081.0	Mm.260247	NM_001039184	ENSMUSG00000033671	Cep350	4933409L06Rik|6430546F08Rik	centrosomal protein 350	protein-coding	4.2148366468524	3.68532507592934	3.20429364405065	4.66978974967589	2.85802850364366	3.11861646587974	2.38826055636186	1.85370946162378	-2.21420251875285	0.0005106858839655	0.0113607093371163
Merged-chr13-107944987-4	chr13	107944861	107945061	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-54897.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-112517161-4	chr12	112517048	112517248	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15-int|LTR|ERVL	-5988.0	NM_178915	104885.0	Mm.37751	NM_178915	ENSMUSG00000054013	Tmem179	AI839735	transmembrane protein 179	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116007904-2	chr11	116007804	116008004	+	829.875	f1_balb.idr|f1_c57bl6.idr	TTS (NM_016905)	TTS (NM_016905)	4815.0	NM_016905	14635.0	Mm.2820	NM_016905	ENSMUSG00000020766	Galk1	AA409894|GALK|Gk|Glk|Glk1	galactokinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-47432028-2	chr16	47431928	47432128	+	550.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus4|LINE|L1	726471.0	NR_152166	619300.0	Mm.384092	NR_152166		6430553K19Rik	-	RIKEN cDNA 6430553K19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-93663898-1	chr2	93663798	93663998	+	561.0	f1_balb.idr	intron (NM_007442, intron 1 of 3)	intron (NM_007442, intron 1 of 3)	21464.0	NM_007442	11695.0	Mm.389389	NM_007442	ENSMUSG00000040310	Alx4	lst	aristaless-like homeobox 4	protein-coding	-1.36015291771705	-1.32842431658676	-1.33874579108173	-1.34722415754512	-1.35969949349639	-1.32618761000664	-1.33640923549635	-0.791042329471244	2.42373733289067	0.484013421080845	1
Merged-chr17-29671206-4	chr17	29671094	29671294	+	985.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028791, intron 2 of 23)	MTD-int|LTR|ERVL-MaLR	10599.0	NM_028791	74157.0	Mm.390979	NM_028791	ENSMUSG00000024019	Cmtr1	1300018I05Rik|AI451264|Ftsjd2|MTr1	cap methyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-54981214-2	chr18	54981114	54981314	+	879.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_175751, intron 2 of 9)	intron (NM_175751, intron 2 of 9)	8966.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-11144957-2	chr4	11144857	11145057	+	698.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10860.0	NR_030455	735261.0		NR_030455	ENSMUSG00000105333	Mir684-2	Mirn684-2	microRNA 684-2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-62888050-4	chr14	62887950	62888150	+	803.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175546, intron 2 of 11)	Lx6|LINE|L1	22508.0	NR_105860	102465311.0		NR_105860	ENSMUSG00000098858	Mir6541	Gm27311|mmu-mir-6541	microRNA 6541	ncRNA	4.55275972437807	4.20800033133264	4.3023201375769	4.79814866863499	3.79167271722966	4.10258787086415	2.62646146075772	3.62209879581058	-1.15493790050262	0.0145689129184278	0.142189113770577
Merged-chr1-84321593-4	chr1	84321500	84321700	+	973.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	-36955.0	NM_001003948	98496.0	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4|P-CLI1	phosphotyrosine interaction domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-84614201-4	chr12	84614124	84614324	+	983.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008992, intron 3 of 18)	intron (NM_008992, intron 3 of 18)	3242.0	NM_008992	19300.0	Mm.229109	NM_008992	ENSMUSG00000021240	Abcd4	P69r|P70R|Pxmp1l	ATP-binding cassette, sub-family D (ALD), member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-105599023-4	chr5	105598914	105599114	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133897, intron 3 of 3)	intron (NM_133897, intron 3 of 3)	79543.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-92886391-4	chr7	92886275	92886475	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028243, intron 1 of 8)	intron (NM_028243, intron 1 of 8)	11122.0	NM_028243	72461.0	Mm.389969	NM_028243	ENSMUSG00000061119	Prcp	2510048K03Rik|2610104A14Rik|AI451719|HUMPCP|PCP	prolylcarboxypeptidase (angiotensinase C)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-94477163-4	chr4	94477077	94477277	+	820.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	79619.0	NM_026368	67770.0	Mm.35170	NM_026368	ENSMUSG00000028578	Caap1	5830433M19Rik|AI536248|CAAP	caspase activity and apoptosis inhibitor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64537492-3	chr5	64537305	64537505	+	759.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60397.0	NR_045413	77382.0	Mm.366742	NR_045411	ENSMUSG00000105352	C030018K13Rik	-	RIKEN cDNA C030018K13 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191950468-4	chr1	191950361	191950561	+	883.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26909.0	NM_001177900	74023.0	Mm.274393	NM_023727	ENSMUSG00000049353	Rd3	3322402L07Rik|rd-3|rd3	retinal degeneration 3	protein-coding	3.83150823195377	3.41438883992901	2.82387920457884	4.20621023999649	3.5257355988919	2.79411024986268	3.81063161577055	3.63068680095544	-0.266171540256035	0.641756361746255	0.982599433509505
Merged-chr9-68969255-3	chr9	68969158	68969358	+	874.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013646, intron 1 of 10)	MTE2b|LTR|ERVL-MaLR	203912.0	NR_033299	320440.0	Mm.483129	NM_177159		9530091C08Rik	-	RIKEN cDNA 9530091C08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-4612461-2	chr10	4612361	4612561	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007956, intron 1 of 8)	intron (NM_007956, intron 1 of 8)	472.0	NM_007956	13982.0	Mm.9213	NM_007956	ENSMUSG00000019768	Esr1	ER|ER-alpha|ERa|ERalpha|ESR|Estr|Estra|Nr3a1	estrogen receptor 1 (alpha)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-53313681-4	chr1	53313578	53313778	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_104361)	promoter-TSS (NR_104361)	54.0	NR_104360	72085.0	Mm.482256	NM_028091	ENSMUSG00000026096	Osgepl1	2610001M19Rik|AA416452	O-sialoglycoprotein endopeptidase-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-84387523-4	chr2	84387422	84387622	+	945.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018782, intron 2 of 15)	intron (NM_018782, intron 2 of 15)	37744.0	NM_018782	54598.0	Mm.75467	NM_018782	ENSMUSG00000059588	Calcrl	AV071593|CRLR	calcitonin receptor-like	protein-coding	4.92692068573027	4.67133111031879	4.90033535048644	5.12328854716255	3.20353476440582	3.2700599626044	4.85943156177734	3.16110775167114	-1.36979262699515	0.00422936864262668	0.0587314409424015
Merged-chr6-31053154-2	chr6	31053054	31053254	+	638.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9593.0	NR_029744	387222.0		NR_029744	ENSMUSG00000065610	Mir29a	Mirn29a|mir-29a|mmu-mir-29a	microRNA 29a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80741251-2	chr7	80741152	80741352	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016721, intron 18 of 37)	intron (NM_016721, intron 18 of 37)	-52375.0	NM_173863	70461.0	Mm.392175	NM_173863	ENSMUSG00000030527	Crtc3	2610312F20Rik|6332415K15Rik|AI429792|BC011210|TORC3	CREB regulated transcription coactivator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-65794535-4	chr11	65794414	65794614	+	952.158325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-6155.0	NM_001316367	26398.0	Mm.412922	NM_009157	ENSMUSG00000033352	Map2k4	JNKK1|MEK4|MKK4|PRKMK4|Sek1|Serk1	mitogen-activated protein kinase kinase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-89128650-4	chr15	89128558	89128758	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028449)	promoter-TSS (NR_028449)	42.0	NR_028448	170787.0	Mm.203954	NM_199198	ENSMUSG00000062906	Hdac10	AW548891|Hd10	histone deacetylase 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19339615-2	chr7	19339515	19339715	+	573.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-5456.0	NM_001127324	13870.0	Mm.280913	NM_007948	ENSMUSG00000003549	Ercc1	Ercc-1	excision repair cross-complementing rodent repair deficiency, complementation group 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-112180042-3	chr9	112179909	112180109	+	719.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001177615)	TTS (NM_001177615)	5940.0	NM_001177618	74100.0	Mm.297444	NM_028755	ENSMUSG00000032503	Arpp21	0710001E13Rik|AI853636|ARPP-21|D9Bwg1012e|R3hdm3|Tarpp	cyclic AMP-regulated phosphoprotein, 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-137400681-2	chr6	137400581	137400781	+	651.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001164401, exon 12 of 26)	exon (NM_001164401, exon 12 of 26)	-10040.0	NM_001164402	19277.0	Mm.186361	NM_011216	ENSMUSG00000030223	Ptpro	D28|GLEPP1|PTPBK|PTPROt|PTPU2|PTPoc|PTPphi|Ptpn15|R-PTP-O	protein tyrosine phosphatase, receptor type, O	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-16013341-4	chr4	16013249	16013449	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355616, intron 1 of 5)	intron (NM_001355616, intron 1 of 5)	489.0	NM_001355615	209212.0	Mm.46455	NM_145950	ENSMUSG00000041153	Osgin2	BC010311|C230027H09Rik	oxidative stress induced growth inhibitor family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-61114370-4	chr10	61114271	61114471	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009163, intron 4 of 14)	intron (NM_009163, intron 4 of 14)	25040.0	NM_025273	13180.0	Mm.39473	NM_025273	ENSMUSG00000020098	Pcbd1	Dcoh|Pcbd|Pcd|Phs	pterin 4 alpha carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81201054-2	chr15	81200954	81201154	+	553.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	10201.0	NR_015603	67638.0	Mm.390832	NM_026288	ENSMUSG00000047938	4930483J18Rik	-	RIKEN cDNA 4930483J18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3815137-2	chr12	3815037	3815237	+	717.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271753, intron 1 of 22)	intron (NM_001271753, intron 1 of 22)	7977.0	NM_001271753	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-79865803-3	chr10	79865889	79866089	+	816.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_181681, exon 7 of 7)	exon (NM_181681, exon 7 of 7)	3402.0	NR_105875	102465549.0		NR_105875	ENSMUSG00000098562	Mir6910	Gm27763|mmu-mir-6910	microRNA 6910	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-77454008-5	chr11	77453950	77454150	+	910.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001291190, exon 14 of 14)	exon (NM_001291190, exon 14 of 14)	-9863.0	NM_139129	216961.0	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-20539829-4	chr16	20539740	20539940	+	818.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302970, intron 3 of 10)	intron (NM_001302970, intron 3 of 10)	4360.0	NM_009679	11773.0	Mm.18946	NM_009679	ENSMUSG00000022841	Ap2m1	-	adaptor-related protein complex 2, mu 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-23753675-4	chr18	23753572	23753772	+	933.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162941)	promoter-TSS (NM_001162941)	-53.0	NM_001162941	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-56067062-1	chr8	56066962	56067162	+	766.5	f0_balb.idr	intron (NM_080438, intron 5 of 9)	intron (NM_080438, intron 5 of 9)	126237.0	NM_080438	110304.0	Mm.307061	NM_080438	ENSMUSG00000038257	Glra3	-	glycine receptor, alpha 3 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-40956027-4	chr15	40955909	40956109	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356998, intron 4 of 6)	intron (NM_001356998, intron 4 of 6)	-217692.0	NR_151516	100418302.0		NR_151516		4930555K19Rik	-	leucine rich repeat and sterile alpha motif containing 1 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52644514-2	chr13	52644414	52644614	+	603.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_011518, intron 13 of 13)	intron (NM_011518, intron 13 of 13)	47632.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-63020001-2	chr2	63019901	63020101	+	552.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133207, intron 2 of 15)	intron (NM_133207, intron 2 of 15)	164286.0	NM_133207	170738.0	Mm.242532	NM_133207	ENSMUSG00000059742	Kcnh7	9330137I11Rik|Kv11.3|erg3	potassium voltage-gated channel, subfamily H (eag-related), member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35978237-2	chr17	35978137	35978337	+	621.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001282025, intron 4 of 4)	intron (NM_001282025, intron 4 of 4)	786.0	NM_001282012	75210.0	Mm.40036	NM_145487	ENSMUSG00000038500	Prr3	4930540G07Rik|Cat56	proline-rich polypeptide 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-118130782-2	chr7	118130682	118130882	+	611.75	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001031814)	TTS (NM_001031814)	-1157.0	NM_019419	54208.0	Mm.29924	NM_019419	ENSMUSG00000030654	Arl6ip1	AIP-6|AL022945|ARMER|AU042858|Aip-1|Arl6ip|C85138|mKIAA0069	ADP-ribosylation factor-like 6 interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-92024130-2	chr2	92024030	92024230	+	621.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011957)	promoter-TSS (NM_011957)	40.0	NM_011957	26427.0	Mm.10353	NM_011957	ENSMUSG00000027230	Creb3l1	Oasis	cAMP responsive element binding protein 3-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-118546773-3	chr2	118546696	118546896	+	783.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_138313, exon 3 of 5)	exon (NM_138313, exon 3 of 5)	803.0	NM_001331221	171543.0	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	1.03892349225399	0.383052108747964	0.175367868262196	0.723204653218962	0.447146904132572	0.183617924982252	0.17685572253378	0.171064839946607	-2.69125922943529	0.183472646320489	1
Merged-chr14-31388364-3	chr14	31388182	31388382	+	918.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347585, intron 2 of 7)	intron (NM_001347585, intron 2 of 7)	29395.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118367906-2	chr11	118367806	118368006	+	655.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	-12495.0	NM_011594	21858.0	Mm.206505	NM_011594	ENSMUSG00000017466	Timp2	D11Bwg1104e|Timp-2	tissue inhibitor of metalloproteinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-59263823-4	chr3	59263712	59263912	+	812.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357008)	promoter-TSS (NM_001357008)	-827.0	NM_001357010	70839.0	Mm.422675	NM_027571	ENSMUSG00000036353	P2ry12	2900079B22Rik|4921504D23Rik|P2Y12	purinergic receptor P2Y, G-protein coupled 12	protein-coding	2.07234425862713	3.05525008200536	1.43479056985412	1.39468660136227	1.53327142345294	2.77898626877816	2.28454016750011	1.40181292122723	-0.141031278625918	0.890905762201461	0.998431161219273
Merged-chr14-55768032-5	chr14	55767887	55768087	+	765.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008519, exon 2 of 2)	exon (NM_008519, exon 2 of 2)	2025.0	NM_008519	16995.0	Mm.20853	NM_008519	ENSMUSG00000046908	Ltb4r1	BLT1|BLTR|Ltb4r|mBLTR	leukotriene B4 receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-66021238-1	chr5	66021138	66021338	+	558.0	f1_balb.idr	intron (NM_139065, intron 6 of 6)	intron (NM_139065, intron 6 of 6)	-16953.0	NR_027961	231253.0	Mm.436542	NM_177679	ENSMUSG00000054598	9130230L23Rik	-	RIKEN cDNA 9130230L23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-23989014-2	chr18	23988914	23989114	+	643.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011755)	promoter-TSS (NM_011755)	-620.0	NM_011755	22694.0	Mm.290596	NM_011755	ENSMUSG00000063281	Zfp35	Zfp-35|Znf271|mszf13|mszf20-1|mszf28|mszf68	zinc finger protein 35	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-43635930-2	chr1	43635830	43636030	+	694.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-94672.0	NM_024283	78896.0	Mm.50109	NM_024283	ENSMUSG00000026051	1500015O10Rik	Ecrg4	RIKEN cDNA 1500015O10 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-94782868-4	chr8	94782762	94782962	+	903.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009142)	TTS (NM_009142)	10682.0	NM_009142	20312.0	Mm.103711	NM_009142	ENSMUSG00000031778	Cx3cl1	AB030188|ABCD-3|AI848747|CX3C|Cxc3|D8Bwg0439e|Scyd1	chemokine (C-X3-C motif) ligand 1	protein-coding	3.02305858089501	2.04172078772949	2.45669679126701	2.89401777768261	2.59935106630846	1.82806325378748	2.33518705777969	3.37072572015699	0.0132641091427258	0.986917376552771	0.998431161219273
Merged-chr9-57523012-2	chr9	57522912	57523112	+	868.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007747, intron 1 of 4)	ID_B1|SINE|B4	1780.0	NM_007747	12858.0	Mm.273403	NM_007747	ENSMUSG00000000088	Cox5a	AA959768|CcOX	cytochrome c oxidase subunit Va	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-38718890-2	chr6	38718790	38718990	+	906.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001294144, exon 11 of 15)	exon (NM_001294144, exon 11 of 15)	55821.0	NM_001101507	665180.0	Mm.349066	NM_001101507	ENSMUSG00000079598	Clec2l	AI414054|AW122724|Gm1064	C-type lectin domain family 2, member L	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-58888141-4	chr15	58888019	58888219	+	933.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1110.0	NM_175226	75841.0	Mm.4537	NM_175226	ENSMUSG00000037075	Rnf139	4930555P18Rik	ring finger protein 139	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-135598635-1	chr6	135598535	135598735	+	594.0	f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-60278.0	NR_126088	75024.0	Mm.399147	NR_126088	ENSMUSG00000107396	4930425L21Rik	4930473P14Rik	RIKEN cDNA 4930425L21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-47369926-3	chr18	47369811	47370011	+	638.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1041.0	NM_001311097	20358.0	Mm.40909	NM_018744	ENSMUSG00000019647	Sema6a	A730020P05Rik|AI851735|Sema6A-1|Semaq|VIa	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-42310845-4	chr6	42310729	42310929	+	969.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013491, intron 18 of 22)	intron (NM_013491, intron 18 of 22)	13811.0	NM_001286584	76156.0	Mm.234314	NM_029528	ENSMUSG00000029861	Fam131b	6330503C03Rik|6530406I18Rik|AV277466	family with sequence similarity 131, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-125252452-2	chr2	125252352	125252552	+	548.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023595, intron 3 of 5)	intron (NM_023595, intron 3 of 5)	4937.0	NM_023595	110074.0	Mm.282499	NM_023595	ENSMUSG00000027203	Dut	5031412I06Rik|5133400F09Rik|D2Bwg0749e|Dutp|dUTPase	deoxyuridine triphosphatase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-151231108-2	chr5	151231008	151231208	+	569.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-40915.0	NR_153382	243362.0	Mm.209272	NM_146258	ENSMUSG00000016128	Stard13	DLC2|GT650	StAR-related lipid transfer (START) domain containing 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-115626600-4	chr8	115626485	115626685	+	874.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	80309.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-74390894-4	chr13	74390794	74390994	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14328.0	NM_001081680	238722.0	Mm.461254	NM_001081680	ENSMUSG00000069184	Zfp72	Zfp74	zinc finger protein 72	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-58601456-4	chr13	58601349	58601549	+	916.224976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022317, intron 1 of 17)	intron (NM_022317, intron 1 of 17)	9428.0	NM_022317	114304.0	Mm.18188	NM_022317	ENSMUSG00000021553	Slc28a3	Cnt3	solute carrier family 28 (sodium-coupled nucleoside transporter), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-24179218-2	chr7	24179118	24179318	+	702.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001029933, intron 3 of 3)	ORR1C1-int|LTR|ERVL-MaLR	4196.0	NM_001029933	232966.0	Mm.435485	NM_001029933	ENSMUSG00000068962	Zfp114	Gm1957|Zfp110	zinc finger protein 114	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-138912464-3	chr1	138912357	138912557	+	929.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35507.0	NR_138576	75546.0	Mm.71176	NR_138576	ENSMUSG00000099808	1700019P21Rik	-	RIKEN cDNA 1700019P21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-143026922-2	chr7	143026822	143027022	+	590.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_110354, intron 4 of 4)	MTD|LTR|ERVL-MaLR	21263.0	NM_001128081	27027.0	Mm.28172	NM_020286	ENSMUSG00000000244	Tspan32	AW208513|Art-1|BB235973|D7Wsu37e|Phemx|Tssc6	tetraspanin 32	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46339840-4	chr19	46339739	46339939	+	981.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1179.0	NM_001164292	67116.0	Mm.218848	NM_024192	ENSMUSG00000036748	Cuedc2	3010002G01Rik	CUE domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70661518-1	chr11	70661418	70661618	+	542.0	f1_c57bl6.idr	exon (NM_001276285, exon 9 of 12)	exon (NM_001276285, exon 9 of 12)	4342.0	NM_007933	13808.0	Mm.251322	NM_007933	ENSMUSG00000060600	Eno3	Eno-3|MSE	enolase 3, beta muscle	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-105505188-3	chr14	105505086	105505286	+	861.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045921, intron 1 of 2)	intron (NR_045921, intron 1 of 2)	6398.0	NR_045921	74864.0	Mm.159344	NR_045921	ENSMUSG00000022116	4930449E01Rik	-	RIKEN cDNA 4930449E01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-100489087-3	chr9	100488976	100489176	+	965.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2603.0	NM_001033543	213208.0	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	2.67002956982936	1.35365936626003	2.82403125462266	2.18243743657865	2.38845706998553	1.36101558027795	2.49420460678052	2.19388405305883	-0.44238999655033	0.652305697983651	0.986434615290108
Merged-chr7-45705670-2	chr7	45705559	45705759	+	829.0	f0_balb.idr|f0_c57.idr	TTS (NM_009800)	TTS (NM_009800)	412.0	NM_016974	13170.0	Mm.24222	NM_016974	ENSMUSG00000059824	Dbp	-	D site albumin promoter binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-61584845-4	chr8	61584753	61584953	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293772, intron 10 of 21)	L2a|LINE|L2	6316.0	NM_001293774	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52031620-4	chr13	52031463	52031663	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65178.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-184562457-4	chr1	184562358	184562558	+	970.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4767.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	3.04671228225012	2.48421377852461	3.14672713072572	2.591932970698	3.30739353307389	2.77986159601842	1.85101669970664	2.71621955050193	-0.141346293182707	0.84928785952338	0.998431161219273
Merged-chr10-95844046-4	chr10	95843954	95844154	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR12BD_Mm|LTR|ERVK	-96609.0	NM_001001932	216238.0	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27755067-3	chr2	27754957	27755157	+	806.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290481, intron 7 of 9)	intron (NM_001290481, intron 7 of 9)	44474.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-128609091-2	chr4	128608991	128609191	+	740.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177758, intron 1 of 7)	intron (NM_177758, intron 1 of 7)	1007.0	NM_177758	269585.0	Mm.153291	NM_177758	ENSMUSG00000061894	Zscan20	C130001F22|Zfp31|Zkscan20	zinc finger and SCAN domains 20	protein-coding	-0.944452312839821	-1.06980499840527	-1.08137418347786	-1.08830806243699	-1.09125475322374	-1.06729790773803	-0.492469820684107	-1.08794360978941	1.85122623007205	0.563032835033943	1
Merged-chr8-88642110-1	chr8	88642010	88642210	+	559.0	f1_balb.idr	Intergenic	ORR1A3|LTR|ERVL-MaLR	-5237.0	NM_145857	257632.0	Mm.222633	NM_145857	ENSMUSG00000055994	Nod2	ACUG|BLAU|CD|Card15|F830032C23Rik|IBD1|Nlrc2	nucleotide-binding oligomerization domain containing 2	protein-coding	-1.52696403314699	-1.49523967873556	-1.5048333853602	-1.51271394162622	-1.52473704212565	-1.49316068248889	-1.50266158046844	-1.06847079017215	2.01069003169785	0.564432837776867	1
Merged-chr4-155219188-2	chr4	155219087	155219287	+	679.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_011385, intron 1 of 6)	intron (NM_011385, intron 1 of 6)	3348.0	NM_011385	20481.0	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	1.86894396278884	1.4893490937279	0.740368969027924	0.728555064313352	1.3099504432935	1.62814386057725	0.967498386883101	0.730634699528576	-0.388631029272265	0.791607463612414	0.998431161219273
Merged-chr9-106343475-3	chr9	106343263	106343463	+	696.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027354, intron 10 of 10)	intron (NM_027354, intron 10 of 10)	-25269.0	NM_153459	235584.0	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	1.5333157369549	1.14718519493135	0.547179134597924	0.537225920528095	0.861855396373543	0.562672214136438	0.549995510216963	1.65816714063262	-0.0456868419260128	0.978172142401585	0.998431161219273
Merged-chr8-111221217-2	chr8	111221117	111221317	+	571.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009149, intron 1 of 25)	B1_Mur4|SINE|Alu	37985.0	NM_009149	20340.0	Mm.276271	NM_009149	ENSMUSG00000003316	Glg1	AI593353|AW537898|CFR|CFR-1|ESL-1|MG-160|MG160|Selel	golgi apparatus protein 1	protein-coding	1.20561280913497	1.63141527235952	1.66992992693562	0.765964459748675	1.21649495374117	0.795061354186173	1.68570030793638	0.767966350647383	-0.695789700024727	0.627728366848483	0.980912176761026
Merged-chr11-87019654-4	chr11	87019539	87019739	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25877.0	NM_001005341	77864.0	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-51351013-4	chr13	51350929	51351129	+	838.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57589.0	NM_010101	13610.0	Mm.136736	NM_010101	ENSMUSG00000067586	S1pr3	AI132464|Edg3|Lpb3|S1p3	sphingosine-1-phosphate receptor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-145832800-7	chr2	145832715	145832915	+	986.238098	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028724, intron 4 of 12)	intron (NM_028724, intron 4 of 12)	46699.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-117120515-4	chr4	117120388	117120588	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_024078, exon 7 of 7)	non-coding (NR_024078, exon 7 of 7)	5237.0	NR_024078	78611.0	Mm.446227	NM_001033187		Btbd19	9530048O09Rik|BB115071	BTB (POZ) domain containing 19	ncRNA	5.85725445861283	5.58756333135311	5.48470463328939	5.79995812303049	5.77138060973088	6.46102626423981	6.0764272618187	6.11174593007535	0.468500615769043	0.058106291516313	0.356207967075077
Merged-chr18-69593358-4	chr18	69593247	69593447	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 8 of 19)	intron (NM_001361128, intron 8 of 19)	247187.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-157060358-2	chr2	157060258	157060458	+	593.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001164663, exon 2 of 15)	exon (NM_001164663, exon 2 of 15)	18907.0	NM_001164663	320706.0	Mm.79466	NM_001164663	ENSMUSG00000055485	Soga1	9830001H06Rik|AI426038|D430036N24Rik|Soga	suppressor of glucose, autophagy associated 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-57955653-4	chr4	57955548	57955748	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011660, intron 1 of 4)	CpG	763.0	NM_011660	22166.0	Mm.260618	NM_011660	ENSMUSG00000028367	Txn1	ADF|AW550880|Trx1|Txn	thioredoxin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65001138-3	chr9	65001012	65001212	+	932.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021345, intron 5 of 10)	intron (NM_021345, intron 5 of 10)	20605.0	NM_021345	57874.0	Mm.308180	NM_021345	ENSMUSG00000033629	Hacd3	4930523M17Rik|AW742319|B-ind1|Hcad3|Hspc121|Ptplad1	3-hydroxyacyl-CoA dehydratase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-53212924-3	chr5	53212808	53213008	+	850.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172710, intron 1 of 23)	intron (NM_172710, intron 1 of 23)	544.0	NM_172710	231238.0	Mm.235020	NM_172710	ENSMUSG00000029189	Sel1l3	2310045A20Rik|AI429585|mKIAA0746	sel-1 suppressor of lin-12-like 3 (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-35137725-4	chr7	35137603	35137803	+	884.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	18410.0	NM_007678	12606.0	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-127773265-2	chr1	127773165	127773365	+	753.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028399)	promoter-TSS (NM_028399)	789.0	NR_045298	100502745.0	Mm.440061	NR_045298	ENSMUSG00000102014	2900009J06Rik	-	RIKEN cDNA 2900009J06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-144979327-2	chr4	144979227	144979427	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001276465, intron 68 of 69)	intron (NM_001276465, intron 68 of 69)	86190.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34286984-8	chr17	34286883	34287083	+	916.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010378, intron 1 of 4)	intron (NM_010378, intron 1 of 4)	788.0	NM_010378	14960.0	Mm.235338	NM_010378	ENSMUSG00000036594	H2-Aa	Aalpha|H-2Aa|H2Aa|I-Aalpha|IAalpha|Ia-1|Ia1	histocompatibility 2, class II antigen A, alpha	protein-coding	4.46251562263104	5.1601225090369	4.97843525771865	4.11945832025451	4.70378251184606	4.28326661515867	3.25451181989723	2.32850988109626	-1.02789465505351	0.0561955468337108	0.349706520181982
Merged-chr5-135705528-4	chr5	135705445	135705645	+	962.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008898, intron 1 of 15)	B4A|SINE|B4	16400.0	NM_008898	18984.0	Mm.3863	NM_008898	ENSMUSG00000005514	Por	4933424M13Rik|CPR|CYPOR|P450R	P450 (cytochrome) oxidoreductase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-69789614-4	chr2	69789526	69789726	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028521)	promoter-TSS (NM_028521)	-111.0	NM_028521	73373.0	Mm.9621	NM_028521	ENSMUSG00000027088	Phospho2	1700048E23Rik|AI661517|AU021728|AV006103|Phos2	phosphatase, orphan 2	protein-coding	6.57516383874733	6.79217933643613	6.31452597518092	6.5986799661549	6.84952503938752	6.69931457407942	6.55989087993524	6.18237454891823	0.0178141280172724	0.931768927267097	0.998431161219273
Merged-chr18-67724578-4	chr18	67724391	67724591	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001127177, exon 1 of 9)	exon (NM_001127177, exon 1 of 9)	130.0	NM_001127177	19255.0	Mm.260433	NM_008977	ENSMUSG00000024539	Ptpn2	AI325124|Ptpt|TC-PTP	protein tyrosine phosphatase, non-receptor type 2	protein-coding	3.65684540859491	2.77013037289415	4.68998116150686	2.843770711528	1.93646422393864	2.44134270034443	2.95966927707376	3.63407505204149	-1.29284112898817	0.0730934920922334	0.408406627332927
Merged-chr11-116091586-2	chr11	116091486	116091686	+	932.599976	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-4591.0	NM_001347642	22378.0	Mm.284792	NM_016852	ENSMUSG00000034341	Wbp2	-	WW domain binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-22872485-2	chr11	22872382	22872582	+	552.0	f0_balb.idr|f1_balb.idr	Intergenic	RMER15|LTR|ERVL	-12146.0	NM_001169114	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-34303611-4	chr13	34303506	34303706	+	817.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033167, intron 2 of 10)	intron (NM_001033167, intron 2 of 10)	41576.0	NM_001033167	73102.0	Mm.23932	NM_001033167	ENSMUSG00000038267	Slc22a23	3110004L20Rik	solute carrier family 22, member 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-128616020-4	chr4	128615891	128616091	+	876.908325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_205823, exon 1 of 1)	exon (NM_205823, exon 1 of 1)	2628.0	NM_205823	384059.0	Mm.331901	NM_205823	ENSMUSG00000062545	Tlr12	Gm1365|Tlr11	toll-like receptor 12	protein-coding	3.79195946290108	3.42738945181644	3.00885608790781	3.3846920613082	2.99049224792309	3.96971663581525	2.45435181479078	3.2367012133091	-0.255997224508724	0.676734725958653	0.99440487726309
Merged-chr14-49064439-2	chr14	49064339	49064539	+	713.6999509999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_207214, intron 1 of 17)	intron (NM_207214, intron 1 of 17)	-2110.0	NM_001360070	74385.0	Mm.379235	NM_144535	ENSMUSG00000036291	Ap5m1	4932432K03Rik|Mu5|Mudeng	adaptor-related protein complex 5, mu 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-129725255-4	chr3	129725166	129725366	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310737)	promoter-TSS (NM_001310737)	-180.0	NM_001329594	13645.0	Mm.252481	NM_010113	ENSMUSG00000028017	Egf	AI790464	epidermal growth factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-25100355-1	chr12	25100255	25100455	+	691.0	f0_balb.idr	Intergenic	Intergenic	-4263.0	NM_010496	15902.0	Mm.34871	NM_010496	ENSMUSG00000020644	Id2	AI255428|C78922|Idb2|bHLHb26	inhibitor of DNA binding 2	protein-coding	1.77147915262646	1.7958585606203	2.1619471728531	1.98676647614532	2.36901723564676	1.97589168389283	2.17817196649598	2.22024033248832	0.701690470079623	0.433555658400239	0.905745034524566
Merged-chr2-127143518-4	chr2	127143446	127143646	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163527)	promoter-TSS (NM_001163527)	-89.0	NM_001355634	73338.0	Mm.57559	NM_001163527	ENSMUSG00000074825	Itpripl1	1700041B20Rik	inositol 1,4,5-triphosphate receptor interacting protein-like 1	protein-coding	3.51748533561923	1.48321198511172	3.30869165083475	2.38395161757702	3.19918295343092	2.03538165853253	2.83737590401629	1.89914765761659	-0.527742253624752	0.545015420371357	0.956287659200869
Merged-chr2-5034793-4	chr2	5034694	5034894	+	965.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356487, intron 8 of 13)	intron (NM_001356487, intron 8 of 13)	-22003.0	NM_027290	70024.0	Mm.23828	NM_027290	ENSMUSG00000026669	Mcm10	2410041F14Rik|AU018508|C330019M07Rik|C79164	minichromosome maintenance 10 replication initiation factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-137864203-4	chr5	137864105	137864305	+	803.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6156.0	NM_133209	170741.0	Mm.347593	NM_133209	ENSMUSG00000066684	Pilrb1	FDFACT|Fdact|Pilrb	paired immunoglobin-like type 2 receptor beta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-104712252-4	chr2	104712137	104712337	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177190)	promoter-TSS (NM_177190)	-75.0	NM_177190	320554.0	Mm.249065	NM_177190	ENSMUSG00000027175	Tcp11l1	C130096D04Rik	t-complex 11 like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-95763118-4	chr15	95763020	95763220	+	873.283325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11529.0	NR_131148	629300.0	Mm.247258	NR_131148	ENSMUSG00000115699	Gm6961	EG629300	predicted gene 6961	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84697901-2	chr8	84697795	84697995	+	766.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198020, intron 12 of 16)	B3|SINE|B2	-3562.0	NM_008535	17095.0	Mm.4925	NM_008535	ENSMUSG00000034041	Lyl1	Lyl-1|bHLHa18	lymphoblastomic leukemia 1	protein-coding	-1.3681463318974	-1.33624156493372	-1.34650167276047	-0.80669348975676	-1.36769697821496	-1.33401815676661	-1.34417900924365	-1.3534210303531	-2.3580830592467	0.49586638340111	1
Merged-chr6-86570965-4	chr6	86570879	86571079	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43578.0	NR_037961	72012.0	Mm.349174	NR_037960	ENSMUSG00000097048	1600020E01Rik	-	RIKEN cDNA 1600020E01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-112665612-4	chr12	112665519	112665719	+	802.729126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001331107, intron 2 of 13)	intron (NM_001331107, intron 2 of 13)	-6268.0	NR_105904	102465566.0		NR_105904	ENSMUSG00000098380	Mir6939	Gm27498|mmu-mir-6939	microRNA 6939	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-20749655-4	chr5	20749547	20749747	+	989.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	132477.0	NM_172992	68770.0	Mm.86410	NM_172992	ENSMUSG00000039987	Phtf2	1110054G21Rik|9530062N20Rik|AI447096|C77923	putative homeodomain transcription factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55655714-4	chr19	55655643	55655843	+	920.883301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045318, intron 2 of 3)	(CAGTG)n|Simple_repeat|Simple_repeat	46461.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-36667459-2	chr16	36667359	36667559	+	813.625	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	-1382.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-102507012-4	chr7	102506913	102507113	+	852.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12240.0	NM_146840	258837.0	Mm.377714	NM_146840	ENSMUSG00000044824	Olfr545	MOR42-1|S50	olfactory receptor 545	protein-coding	-0.98636673676577	-0.970012647363645	-0.981062430681435	-0.686267214584395	-0.517023662368924	-0.967502533196007	-0.978973616254493	-0.982712688893276	0.730251360213607	0.819753442490402	1
Merged-chr7-19385861-2	chr7	19385761	19385961	+	992.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_030759)	promoter-TSS (NR_030759)	-782.0	NR_030759	100124438.0		NR_030759	ENSMUSG00000076315	Mir343	Mirn343|mmu-mir-343	microRNA 343	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101470038-2	chr11	101469938	101470138	+	997.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_009708, exon 3 of 5)	exon (NM_009708, exon 3 of 5)	1863.0	NM_009708	11858.0	Mm.378883	NM_009708	ENSMUSG00000001313	Rnd2	Arhn|Rohn|rho7	Rho family GTPase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171617680-2	chr1	171617580	171617780	+	892.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10270.0	NM_001277968	17085.0	Mm.560	NM_008534	ENSMUSG00000004707	Ly9	AI893573|CD229|Lgp100|Ly-9|SLAMF3|T100	lymphocyte antigen 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-40529884-3	chr10	40529788	40529988	+	657.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-40474.0	NM_027572	70840.0	Mm.332570	NM_027572	ENSMUSG00000019834	Slc22a16	4921504E14Rik|CT2|FLIPT2|OCT6|OKB1	solute carrier family 22 (organic cation transporter), member 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-106476756-2	chr9	106476701	106476901	+	793.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_145620)	promoter-TSS (NM_145620)	148.0	NM_001311150	235587.0	Mm.273659	NM_145619	ENSMUSG00000023249	Parp3	A930002C11Rik|AW990611|Adprt3|Adprtl3|PARP-3|pADPRT-3	poly (ADP-ribose) polymerase family, member 3	protein-coding	2.10016080190302	1.71313650545501	1.3174788920693	1.46280765823388	2.11847212786248	1.86971072952275	1.80618485364308	1.08223131331729	0.265567032779939	0.812685583855186	0.998431161219273
Merged-chr1-180890730-3	chr1	180890620	180890820	+	817.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2388.0	NM_177099	320202.0	Mm.87078	NM_177099	ENSMUSG00000066652	Lefty2	6030463A22Rik|Ebaf|Lefta|Leftb|lefty-2|lefty-B	left-right determination factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-112002769-4	chr13	112002675	112002875	+	876.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	134839.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-64290712-2	chr1	64290612	64290812	+	804.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-169323.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-139212308-4	chr4	139212195	139212395	+	928.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271405, intron 1 of 8)	MIRb|SINE|MIR	18184.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	2.29902960449697	3.34250881020399	1.24565370777023	2.1954900788226	1.62412283214658	2.73759804132412	1.25493722866922	2.96465816327999	-0.283977740788927	0.782732227615364	0.998431161219273
Merged-chr13-105293439-4	chr13	105293349	105293549	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027934)	promoter-TSS (NM_027934)	-435.0	NM_027934	71816.0	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-156458780-1	chr1	156458680	156458880	+	629.0	f0_balb.idr	intron (NM_009230, intron 2 of 15)	intron (NM_009230, intron 2 of 15)	15548.0	NM_009230	20652.0	Mm.28099	NM_009230	ENSMUSG00000026600	Soat1	8430426K15Rik|ACAT-1|AW550831|Acact|ald|hid	sterol O-acyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-34768732-2	chr2	34768632	34768832	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	-3358.0	NM_001163434	14828.0	Mm.330160	NM_022310	ENSMUSG00000026864	Hspa5	AL022860|AU019543|Bip|D2Wsu141e|D2Wsu17e|Grp78|Hsce70|SEZ-7|Sez7|baffled|mBiP	heat shock protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-149163328-2	chr4	149163228	149163428	+	679.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081274, intron 3 of 12)	RLTR12B|LTR|ERVK	2754.0	NM_001356332	110208.0	Mm.252080	NM_025801	ENSMUSG00000028961	Pgd	0610042A05Rik|AU019875|C78335	phosphogluconate dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-51951678-4	chr15	51951564	51951764	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	40096.0	NM_009009	19357.0	Mm.182628	NM_009009	ENSMUSG00000022314	Rad21	SCC1|mKIAA0078	RAD21 cohesin complex component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-110902961-3	chr13	110902871	110903071	+	866.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_131193)	promoter-TSS (NR_131193)	-528.0	NR_131193	75139.0	Mm.490931	NR_131193	ENSMUSG00000114472	Gm38397	-	predicted gene, 38397	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64896775-4	chr5	64896671	64896871	+	772.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35928.0	NM_030682	21897.0	Mm.273024	NM_030682	ENSMUSG00000044827	Tlr1	-	toll-like receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-62812924-4	chr9	62812839	62813039	+	966.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-1291.0	NM_010193	14155.0	Mm.24069	NM_010193	ENSMUSG00000032244	Fem1b	mKIAA0396	feminization 1 homolog b (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19469879-2	chr7	19469779	19469979	+	767.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-11385.0	NM_172279	232944.0	Mm.260504	NM_172279	ENSMUSG00000030397	Mark4	2410090P21Rik|C79806|Markl1	MAP/microtubule affinity regulating kinase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-34481394-4	chr6	34481293	34481493	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007563, intron 1 of 2)	intron (NM_007563, intron 1 of 2)	5037.0	NM_007563	12183.0	Mm.282863	NM_007563	ENSMUSG00000038871	Bpgm	AI323730|AL022789|C86192	2,3-bisphosphoglycerate mutase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67538780-4	chr10	67538639	67538839	+	892.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347458, intron 2 of 2)	CpG	809.0	NM_001347458	13654.0	Mm.290421	NM_010118	ENSMUSG00000037868	Egr2	Egr-2|Krox-20|Krox20|NGF1-B|Zfp-25|Zfp-6	early growth response 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-144753248-2	chr5	144753148	144753348	+	699.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_177735, intron 2 of 7)	intron (NM_177735, intron 2 of 7)	8330.0	NM_177735	243339.0	Mm.126793	NM_177735	ENSMUSG00000043388	Tmem130	BC067004|C130036G08	transmembrane protein 130	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-101084598-2	chr12	101084498	101084698	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_211355)	promoter-TSS (NM_211355)	-896.0	NM_001160214	68734.0	Mm.87077	NM_211355	ENSMUSG00000041846	Ppp4r3a	1110034C04Rik|BC064465|Smek1|mKIAA2010	protein phosphatase 4 regulatory subunit 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-84567796-1	chr12	84567696	84567896	+	559.0	f0_balb.idr	Intergenic	B4|SINE|B4	-2032.0	NM_007701	12677.0	Mm.4405	NM_007701	ENSMUSG00000021239	Vsx2	Chx10|Hox-10|Hox10|or	visual system homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-71923161-2	chr6	71923061	71923261	+	641.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009088, intron 6 of 33)	LTR10_RN|LTR|ERVK	14108.0	NM_009088	20019.0	Mm.135581	NM_009088	ENSMUSG00000049553	Polr1a	194kDa|2900087K15Rik|3010014K16Rik|RPA194|Rpo1-4|mRPA1	polymerase (RNA) I polypeptide A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-19294042-2	chr18	19293942	19294142	+	669.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB-int|LTR|ERVL-MaLR	708055.0	NM_007882	13507.0	Mm.89935	NM_007882	ENSMUSG00000059898	Dsc3	5430426I24Rik	desmocollin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-43888750-2	chr5	43888682	43888882	+	719.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_007646, intron 1 of 7)	B4A|SINE|B4	19973.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-176224038-4	chr1	176223943	176224143	+	971.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357846, intron 1 of 8)	intron (NM_001357846, intron 1 of 8)	-10101.0	NM_001195816	319455.0	Mm.338001	NM_176916	ENSMUSG00000055214	Pld5	B230365F16Rik	phospholipase D family, member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101419735-3	chr7	101419642	101419842	+	818.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1949.0	NM_001008548	207728.0	Mm.247564	NM_001008548	ENSMUSG00000030653	Pde2a	CGS-PDE|cGSPDE	phosphodiesterase 2A, cGMP-stimulated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-88627230-1	chr8	88627130	88627330	+	638.0	f1_balb.idr	exon (NM_027840, exon 4 of 4)	exon (NM_027840, exon 4 of 4)	8898.0	NM_027840	71607.0	Mm.270607	NM_027840	ENSMUSG00000031662	Snx20	9130017C17Rik	sorting nexin 20	protein-coding	-0.215323752722013	-0.32588479898188	-0.328867382681339	-0.331143476833387	-0.104075691810852	-0.0150234199300658	0.0671459212147973	-0.330747422840235	2.60917453837133	0.268748050082464	1
Merged-chr11-22515332-5	chr11	22515323	22515523	+	823.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153596, intron 1 of 3)	intron (NM_153596, intron 1 of 3)	3140.0	NM_153596	103765.0	Mm.221274	NM_153596	ENSMUSG00000049904	Tmem17	AI503894|AW049890	transmembrane protein 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-138441506-4	chr5	138441441	138441641	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028130)	promoter-TSS (NM_028130)	65.0	NM_028130	72154.0	Mm.20263	NM_028130	ENSMUSG00000036898	Zfp157	2610020C11Rik|A630094N24Rik|AI327407|Roma|mszf12|mszf23-1	zinc finger protein 157	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-51157045-3	chr14	51156993	51157193	+	739.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-5167.0	NM_019398	54159.0	Mm.377125	NM_019398	ENSMUSG00000059606	Rnase2b	Ear5|Raf4|mR5	ribonuclease, RNase A family, 2B (liver, eosinophil-derived neurotoxin)	protein-coding	-1.22315906685268	-1.19557143632602	-1.20673282037136	-0.55836125556573	-1.22265483704505	-1.19315271784257	-1.20420612767407	-1.21425999345206	-2.67891099987134	0.437057736398543	1
Merged-chr11-114666854-2	chr11	114666754	114666954	+	886.1999509999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C2|LTR|ERVK	-1689.0	NM_023372	67671.0	Mm.238817	NM_023372	ENSMUSG00000057322	Rpl38	0610025G13Rik|Rbt|Ts|Tss	ribosomal protein L38	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96055640-3	chr3	96055523	96055723	+	853.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013841, intron 2 of 14)	intron (NM_013841, intron 2 of 14)	2832.0	NM_013841	22365.0	Mm.263185	NM_013841	ENSMUSG00000015747	Vps45	AI462172|AW554165|mVps45	vacuolar protein sorting 45	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64506370-3	chr5	64506281	64506481	+	869.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29373.0	NR_045413	77382.0	Mm.366742	NR_045411	ENSMUSG00000105352	C030018K13Rik	-	RIKEN cDNA C030018K13 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126582733-4	chr8	126582622	126582822	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10714.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-78841960-3	chr2	78841852	78842052	+	877.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F1|LTR|ERVL-MaLR	-27095.0	NM_009454	22193.0	Mm.1485	NM_009454	ENSMUSG00000027011	Ube2e3	Ubce4|ubcM2	ubiquitin-conjugating enzyme E2E 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36541645-3	chr18	36541519	36541719	+	644.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271547, intron 19 of 19)	intron (NM_001271547, intron 19 of 19)	13467.0	NM_001271545	240215.0	Mm.135463	NM_172830	ENSMUSG00000024485	Slc4a9	AE4|D630003B07|D630024F24Rik	solute carrier family 4, sodium bicarbonate cotransporter, member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-42820143-4	chr13	42820061	42820261	+	893.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005740, intron 1 of 12)	intron (NM_001005740, intron 1 of 12)	-46086.0	NM_001302636	218194.0	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-8561057-1	chr11	8560957	8561157	+	684.0	f0_c57.idr	intron (NM_001083587, intron 4 of 30)	intron (NM_001083587, intron 4 of 30)	103478.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0.0226556818983888	-0.0854844721077774	0.0601502688616959	0.165823486698926	0.22814855015133	-0.0846957034421126	0.305913956111575	-0.0911453881136663	0.600703055960236	0.773697314772666	1
Merged-chr13-89490869-2	chr13	89490769	89490969	+	999.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49767.0	NM_013500	12950.0	Mm.266790	NM_013500	ENSMUSG00000021613	Hapln1	BB099155|CLP|Crtl1|Crtl1l|LP|LP-1	hyaluronan and proteoglycan link protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-36496966-4	chr3	36496871	36497071	+	977.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9838.0	NR_040590	329623.0	Mm.490730	NR_040590	ENSMUSG00000085320	Gm11548	E330009D11	predicted gene 11548	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-35040322-2	chr9	35040222	35040422	+	888.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-76406.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-20550224-4	chr8	20550132	20550332	+	991.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-64695.0	NM_001270553	100861668.0	Mm.491087	NM_001270553	ENSMUSG00000095294	Gm21119	-	predicted gene, 21119	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166027419-2	chr2	166027319	166027519	+	798.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008679, intron 1 of 22)	intron (NM_008679, intron 1 of 22)	34782.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-130810314-4	chr4	130810216	130810416	+	971.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011520, intron 1 of 4)	intron (NM_011520, intron 1 of 4)	17779.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-23753340-3	chr11	23753242	23753442	+	867.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009044, intron 3 of 9)	intron (NM_009044, intron 3 of 9)	17628.0	NM_009044	19696.0	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-54019699-4	chr5	54019585	54019785	+	983.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081103, intron 1 of 11)	intron (NM_001081103, intron 1 of 11)	21162.0	NM_001081103	116873.0	Mm.265985	NM_054083	ENSMUSG00000039156	Stim2	-	stromal interaction molecule 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-67645334-4	chr7	67645229	67645429	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175124)	promoter-TSS (NM_175124)	-93.0	NR_028143	67867.0	Mm.31247	NM_027413	ENSMUSG00000030556	Lrrc28	1300004K21Rik|2210012C09Rik|2310058O11Rik	leucine rich repeat containing 28	protein-coding	-0.865326703316383	-0.849971874135937	0.280665258210813	-0.858864759381203	-0.86435674098481	-0.848731039658829	-0.853951331253819	-0.858192605091486	-3.66751939073779	0.204629335831286	1
Merged-chr4-41626673-1	chr4	41626573	41626773	+	757.0	f1_balb.idr	intron (NM_175138, intron 13 of 19)	intron (NM_175138, intron 13 of 19)	13629.0	NM_027147	69638.0	Mm.372459	NM_027147	ENSMUSG00000028445	Enho	1110065P19Rik|2310040A07Rik	energy homeostasis associated	protein-coding	-1.18378942727406	-1.15669478905697	-0.457913181653105	-1.17806440097404	-1.18323730008524	-1.15415234459186	-1.16577117532349	-1.17633933179771	-2.81844548480871	0.412768592413622	1
Merged-chr11-86756944-4	chr11	86756775	86756975	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003908, intron 1 of 31)	intron (NM_001003908, intron 1 of 31)	692.0	NM_001003908	67300.0	Mm.254588	NM_001003908	ENSMUSG00000047126	Cltc	3110065L21Rik|CHC|R74732	clathrin, heavy polypeptide (Hc)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-78054113-4	chr2	78054013	78054213	+	969.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_108098, intron 1 of 6)	MER34A|LTR|ERV1	2936.0	NR_108098	78158.0	Mm.78473	NR_108098	ENSMUSG00000085431	4930440I19Rik	-	RIKEN cDNA 4930440I19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-31853854-4	chr17	31853753	31853953	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010831, intron 3 of 13)	intron (NM_010831, intron 3 of 13)	1951.0	NM_010831	17691.0	Mm.290941	NM_010831	ENSMUSG00000024042	Sik1	Hrt-20|Msk|Sik|Sik-1|Snf1lk	salt inducible kinase 1	protein-coding	1.66938728188175	1.34235910994383	2.1710125698184	2.43311384713496	1.00465657086774	1.08439577837108	2.37368411293164	1.63313725806267	-0.824543375617931	0.483083134864925	0.930924929812101
Merged-chr7-31078195-1	chr7	31078095	31078295	+	566.0	f1_balb.idr	Intergenic	Intergenic	-1498.0	NM_008557	17178.0	Mm.263847	NM_008557	ENSMUSG00000057092	Fxyd3	Mat8	FXYD domain-containing ion transport regulator 3	protein-coding	0.620842280154311	0.168488346576069	0.162447162414351	0.321568362948176	0.422522459936903	0.89838316027702	0.163779927231892	0.324575609947586	1.00984616712011	0.593159603495061	1
Merged-chr9-57642473-2	chr9	57642373	57642573	+	919.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001304761, intron 2 of 14)	intron (NM_001304761, intron 2 of 14)	3180.0	NM_007783	12988.0	Mm.21974	NM_007783	ENSMUSG00000032312	Csk	AW212630|p50CSK	c-src tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32437240-2	chr2	32437140	32437340	+	856.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146118, intron 1 of 10)	L1MEc|LINE|L1	-6089.0	NM_001164358	227731.0	Mm.37395	NM_146118	ENSMUSG00000026819	Slc25a25	1110030N17Rik|MCSC|mKIAA1896	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-89147231-4	chr15	89147153	89147353	+	906.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011161, intron 1 of 11)	intron (NM_011161, intron 1 of 11)	2353.0	NM_011161	19094.0	Mm.91969	NM_011161	ENSMUSG00000053137	Mapk11	P38b|Prkm11|Sapk2|Sapk2b|p38-2|p38beta|p38beta2	mitogen-activated protein kinase 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-49747004-2	chr2	49746904	49747104	+	629.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008449, intron 21 of 25)	intron (NM_008449, intron 21 of 25)	-40682.0	NM_027990	71897.0	Mm.41381	NM_027990	ENSMUSG00000026765	Lypd6b	2310010M24Rik|AW049525	LY6/PLAUR domain containing 6B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-9900924-2	chr19	9900824	9901024	+	620.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A1|LTR|ERVL-MaLR	-1391.0	NM_016692	16319.0	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-69986474-4	chr12	69986400	69986600	+	884.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022028, intron 1 of 4)	CpG	502.0	NM_022028	64010.0	Mm.390480	NM_022028	ENSMUSG00000021067	Sav1	1700040G09Rik|Salv|Sav|WW45|Wwp3|Wwp4	salvador family WW domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-100039117-2	chr15	100039017	100039217	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159361, intron 1 of 37)	CpG	453.0	NM_001159361	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-109352525-3	chr3	109352413	109352613	+	966.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020505, intron 1 of 26)	MIRc|SINE|MIR	11830.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-36958585-4	chr17	36958503	36958703	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029602)	promoter-TSS (NM_029602)	11.0	NM_029602	76416.0	Mm.26684	NM_029602	ENSMUSG00000036214	Znrd1as	1700022C21Rik|AI746295|Znrd1-as	zinc ribbon domain containing 1, antisense	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-50926724-4	chr14	50926637	50926837	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001310505)	TTS (NM_001310505)	1788.0	NM_009687	11792.0	Mm.203	NM_009687	ENSMUSG00000035960	Apex1	APE|Apex|HAP1|Ref-1	apurinic/apyrimidinic endonuclease 1	protein-coding	1.95063610097599	2.21685475404529	1.63925900935591	1.002728428075	2.21215994962028	2.23505508408486	1.02742831856089	1.00614209056074	-0.0197948566878291	0.98745341479963	0.998431161219273
Merged-chr11-51821002-4	chr11	51820886	51821086	+	844.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357588, intron 11 of 12)	intron (NM_001357588, intron 11 of 12)	36495.0	NM_199299	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-150666855-2	chr5	150666755	150666955	+	603.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TC)n|Simple_repeat|Simple_repeat	-1243.0	NM_201369	381695.0	Mm.246934	NM_201369	ENSMUSG00000029655	N4bp2l2	2700092H06Rik|Gm38758|zag1	NEDD4 binding protein 2-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122430083-1	chr8	122429983	122430183	+	1000.0	f0_c57.idr	intron (NM_001301284, intron 1 of 4)	intron (NM_001301284, intron 1 of 4)	2857.0	NM_001301284	13057.0	Mm.271671	NM_007806	ENSMUSG00000006519	Cyba	b558|nmf333|p22-phox|p22phox	cytochrome b-245, alpha polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-60520117-2	chr13	60520017	60520217	+	651.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-81830.0	NM_001285917	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-118155384-4	chr5	118155177	118155377	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172721, exon 1 of 11)	exon (NM_172721, exon 1 of 11)	181.0	NM_172721	231672.0	Mm.221769	NM_172721	ENSMUSG00000032867	Fbxw8	4930438M06Rik|FBW6|FBW8|FBXO29|Fbx29	F-box and WD-40 domain protein 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-21909698-3	chr2	21909620	21909820	+	745.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-317783.0	NM_148413	667663.0	Mm.330033	NM_148413	ENSMUSG00000025716	Myo3a	9030416P08Rik	myosin IIIA	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102705267-4	chr12	102705191	102705391	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172584)	promoter-TSS (NM_172584)	-422.0	NM_172584	217837.0	Mm.482192	NM_172584	ENSMUSG00000057963	Itpk1	BC031182	inositol 1,3,4-triphosphate 5/6 kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-59267201-2	chr10	59267101	59267301	+	785.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR24|LTR|ERV1	45279.0	NM_172939	268301.0	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65909728-3	chr9	65909629	65909829	+	864.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019797)	promoter-TSS (NM_019797)	719.0	NM_173185	214897.0	Mm.325816	NM_173185	ENSMUSG00000032384	Csnk1g1	9130020E21Rik	casein kinase 1, gamma 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-28844176-4	chr13	28844082	28844282	+	951.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045054, intron 2 of 7)	intron (NR_045054, intron 2 of 7)	41240.0	NR_045054	72518.0	Mm.37454	NR_045053		2610307P16Rik	AI666457	RIKEN cDNA 2610307P16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-24531626-7	chr7	24531512	24531712	+	956.761902	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_153134, exon 2 of 3)	exon (NM_153134, exon 2 of 3)	964.0	NM_153134	210146.0	Mm.41108	NM_153134	ENSMUSG00000041037	Irgq	AF322649|FKSG27|Irgq1	immunity-related GTPase family, Q	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70795700-4	chr11	70795601	70795801	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045526, intron 3 of 4)	MTB|LTR|ERVL-MaLR	16860.0	NM_001045526	327957.0	Mm.164325	NM_001045526	ENSMUSG00000057135	Scimp	A430084P05Rik	SLP adaptor and CSK interacting membrane protein	protein-coding	3.09775411271021	3.59092875769821	4.31563616269136	3.61768895122056	3.72519743919585	3.29466541652473	3.96030339006388	4.35822474659345	0.24198386894573	0.644648807024056	0.983701068654072
Merged-chr10-124140070-2	chr10	124139980	124140180	+	712.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2B|LINE|L1	-328994.0	NR_028310	75030.0	Mm.159403	NR_028310	ENSMUSG00000112364	4930503E24Rik	-	eukaryotic translation initiation factor 3, subunit I pseudogene	pseudo	0.466368442823709	0.623817393349714	0.00360579327393556	0.533913646813371	-0.0066395444702107	0.0103422737578984	0.00481861075956289	0.000103440339900923	-3.97756015673825	0.0684607292613619	1
Merged-chr6-96116835-3	chr6	96116782	96116982	+	758.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_182808, intron 2 of 4)	intron (NM_182808, intron 2 of 4)	3728.0	NM_182808	320265.0	Mm.489890	NM_182808	ENSMUSG00000059187	Fam19a1	C630007B19Rik|FAM19A1 TAFA-1|TAFA1|Tafa-1	family with sequence similarity 19, member A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-21101382-3	chr1	21101299	21101499	+	847.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr	Intergenic	Intergenic	-22174.0	NM_177409	170829.0	Mm.185680	NM_177409	ENSMUSG00000041779	Tram2	C330003D03Rik	translocating chain-associating membrane protein 2	protein-coding	3.84421681905867	4.38133873796308	3.40479380459859	4.34509053673881	4.86100784425522	5.73108692969539	5.01238395958419	4.01087724347877	1.22968478328095	0.00599583961797562	0.0763907616625466
Merged-chr13-64107824-3	chr13	64107717	64107917	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001321, intron 7 of 11)	intron (NM_001001321, intron 7 of 11)	-18616.0	NM_008291	15487.0	Mm.5109	NM_008291	ENSMUSG00000033122	Hsd17b3	-	hydroxysteroid (17-beta) dehydrogenase 3	protein-coding	2.46683309687549	3.35575945570801	2.95996872218554	3.02114169169126	1.22791025022617	1.37057420875137	2.35661921833972	1.97286059429914	-2.54450365913056	0.00463827169095776	0.063238617895581
Merged-chr10-19594569-5	chr10	19594424	19594624	+	863.176208	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010511, intron 1 of 6)	intron (NM_010511, intron 1 of 6)	2575.0	NM_010511	15979.0	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-12865868-1	chr15	12865768	12865968	+	540.0	f1_balb.idr	intron (NM_026799, intron 13 of 34)	intron (NM_026799, intron 13 of 34)	41053.0	NM_001130149	14000.0	Mm.293142	NM_026799	ENSMUSG00000022191	Drosha	1110013A17Rik|AI874853|Etohi2|Rn3|Rnasen	drosha, ribonuclease type III	protein-coding	1.84499796482101	1.39112281345408	3.00357552211131	2.08941483166132	2.23327890880819	2.24180994083545	2.63164195261117	2.54979290502717	0.401608077544359	0.659836273757938	0.989754410636907
Merged-chr17-50390335-4	chr17	50390249	50390449	+	965.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	-96729.0	NM_001277863	13164.0	Mm.280641	NM_010021	ENSMUSG00000010592	Dazl	Daz-like|Dazh|Dazl1|Dazla|Tpx-2|Tpx2	deleted in azoospermia-like	protein-coding	1.73308604985447	1.42242612561123	2.87807054117418	2.69539077475431	2.23048753948484	3.87233043599496	2.28660480783786	2.89823515459674	1.25397169879994	0.149409405352964	0.601010520370428
Merged-chr19-3083602-2	chr19	3083502	3083702	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MMVL30-int|LTR|ERV1	114101.0	NR_045304	70011.0	Mm.393871	NR_045304	ENSMUSG00000100969	1700030N03Rik	1700087C08Rik	RIKEN cDNA 1700030N03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-157578719-2	chr3	157578619	157578819	+	673.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359745, intron 1 of 3)	MTEb|LTR|ERVL-MaLR	11827.0	NM_011196	19218.0	Mm.30424	NM_011196	ENSMUSG00000040016	Ptger3	EP3|Pgerep3|Ptgerep3	prostaglandin E receptor 3 (subtype EP3)	protein-coding	-0.756923089476925	-0.130576846443453	-0.906429244322686	-0.909111635078976	-0.912915062975841	-0.894789734710217	-0.905663814006919	-0.908642484352915	-3.16862201039633	0.280510347619474	1
Merged-chr15-101191699-4	chr15	101191583	101191783	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007395, intron 1 of 8)	intron (NM_007395, intron 1 of 8)	-2186.0	NR_105927	102466774.0		NR_105927	ENSMUSG00000106563	Mir6962	mmu-mir-6962	microRNA 6962	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91816884-2	chr16	91816784	91816984	+	679.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_010587, exon 11 of 39)	exon (NM_010587, exon 11 of 39)	87513.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-149763530-4	chr4	149763430	149763630	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027460, intron 1 of 6)	URR1B|DNA|hAT-Charlie	10737.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	4.99359288177046	5.0827952768981	3.91658853888732	5.21952353627437	4.58522071196616	3.71472010538068	4.36069013014367	4.86824901916475	-0.540286155265645	0.192552120000943	0.67098611029804
Merged-chr2-169756480-3	chr2	169756351	169756551	+	738.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080455, intron 1 of 1)	intron (NM_080455, intron 1 of 1)	122805.0	NM_080455	228911.0	Mm.315789	NM_080455	ENSMUSG00000047907	Tshz2	2900073F20Rik|B830045G17|Mtsh2|Sdccag33l|Tsh2|Zfp218|mKIAA4248|teashirt2	teashirt zinc finger family member 2	protein-coding	0.258265466700783	-0.341156323047248	-0.344993452379179	-0.0584115863014124	-0.35209680239855	-0.340289276674221	-0.344148454841258	-0.0541019743195276	-1.71664650818722	0.498598291058628	1
Merged-chr6-29776625-2	chr6	29776525	29776725	+	582.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001171000, intron 1 of 16)	L2|LINE|L2	8182.0	NM_001171000	74340.0	Mm.210899	NM_021414	ENSMUSG00000029772	Ahcyl2	4631427C17Rik|AI227036|Adohcyase3|mKIAA0828	S-adenosylhomocysteine hydrolase-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28379246-5	chr7	28379130	28379330	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011756)	promoter-TSS (NM_011756)	-2.0	NM_011756	22695.0	Mm.389856	NM_011756	ENSMUSG00000044786	Zfp36	Gos24|Nup475|TIS11D|TISII|Tis11|Ttp|Zfp-36	zinc finger protein 36	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-54154973-2	chr5	54154873	54155073	+	781.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	156450.0	NM_001081103	116873.0	Mm.265985	NM_054083	ENSMUSG00000039156	Stim2	-	stromal interaction molecule 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-31342754-4	chr3	31342656	31342856	+	986.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32437.0	NM_172861	241919.0	Mm.285366	NM_172861	ENSMUSG00000069072	Slc7a14	A930013N06|BC061928	solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-7136755-4	chr7	7136669	7136869	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029584)	promoter-TSS (NM_029584)	-14.0	NM_029584	76373.0	Mm.159732	NM_029584	ENSMUSG00000063535	Zfp773	2810409K11Rik	zinc finger protein 773	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-118028362-2	chr5	118028262	118028462	+	814.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_151582, intron 1 of 7)	CpG	619.0	NM_021344	57816.0	Mm.273285	NM_021344	ENSMUSG00000029359	Tesc	1010001A17Rik|2410011K10Rik|TE-1	tescalcin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-94551085-2	chr11	94550985	94551185	+	744.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1878.0	NM_001013381	237926.0	Mm.342275	NM_001013381	ENSMUSG00000039096	Rsad1	B430319G23|BC056485	radical S-adenosyl methionine domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-100153247-4	chr15	100153183	100153383	+	957.366699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159361, intron 5 of 37)	intron (NM_001159361, intron 5 of 37)	-1113.0	NM_172819	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-23726888-3	chr17	23726785	23726985	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023058, intron 1 of 7)	intron (NM_023058, intron 1 of 7)	549.0	NM_023058	268930.0	Mm.182193	NM_023058	ENSMUSG00000023908	Pkmyt1	6230424P17|AW209059|Myt1	protein kinase, membrane associated tyrosine/threonine 1	protein-coding	2.63509774740664	2.96768035952738	3.38038989108965	3.28765805435171	2.10359768585656	1.46787106774259	1.93210091676445	2.21735740436544	-2.36281976023285	0.00323081599169605	0.0478953833628944
Merged-chr13-49162865-3	chr13	49162775	49162975	+	816.194458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14547.0	NM_001290311	75607.0	Mm.342723	NM_029361	ENSMUSG00000037989	Wnk2	1810073P09Rik|AW122246|ESTM15|X83337|mKIAA1760	WNK lysine deficient protein kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-56114097-4	chr4	56114011	56114211	+	997.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-581636.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-23495909-1	chr18	23495809	23496009	+	711.5	f0_balb.idr	intron (NM_001361217, intron 2 of 20)	intron (NM_001361217, intron 2 of 20)	-1573.0	NM_001361215	13527.0	Mm.94371	NM_010087	ENSMUSG00000024302	Dtna	2210407P21Rik|DTN-A|Dtn|Gm19389|a-DB-1|adbn	dystrobrevin alpha	protein-coding	0.673789547228071	0.75825213549643	1.23884444939145	1.19411747322545	1.12771075466836	1.50678146252908	1.25132672472028	2.9674604249093	2.95367297254329	0.0223648819968108	0.193509991007983
Merged-chr10-116734851-2	chr10	116734751	116734951	+	948.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_131036, intron 2 of 2)	intron (NR_131036, intron 2 of 2)	5598.0	NR_131036	75878.0	Mm.370607	NR_131036	ENSMUSG00000112924	4930579P08Rik	-	RIKEN cDNA 4930579P08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-31476853-2	chr2	31476753	31476953	+	658.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_002687, intron 2 of 15)	intron (NR_002687, intron 2 of 15)	6545.0	NR_002687	432466.0	Mm.333323	NR_002687	ENSMUSG00000046687	Gm5424	EG432466	argininosuccinate synthase pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-78140476-2	chr18	78140376	78140576	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001171011, intron 1 of 8)	intron (NM_001171011, intron 1 of 8)	1643.0	NM_001171011	108052.0	Mm.33832	NM_028122	ENSMUSG00000059336	Slc14a1	2610507K20Rik|3021401A05Rik|UT-B|Utb1	solute carrier family 14 (urea transporter), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-60840377-4	chr13	60840304	60840504	+	950.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24012.0	NM_178098	214639.0	Mm.19839	NM_178098	ENSMUSG00000050345	4930486L24Rik	AW545031	RIKEN cDNA 4930486L24 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-115367459-4	chr6	115367372	115367572	+	941.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001308354, intron 1 of 7)	intron (NM_001308354, intron 1 of 7)	5123.0	NM_001308354	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-111108877-4	chr10	111108735	111108935	+	946.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55967.0	NM_001003717	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-75858585-2	chr10	75858485	75858685	+	782.333313	f1_balb.idr|f1_c57bl6.idr	TTS (NM_010798)	TTS (NM_010798)	1665.0	NM_010798	17319.0	Mm.2326	NM_010798	ENSMUSG00000033307	Mif	GIF|Glif	macrophage migration inhibitory factor (glycosylation-inhibiting factor)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-95808074-4	chr15	95807967	95808167	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 1 of 19)	intron (NM_175344, intron 1 of 19)	17224.0	NM_001253813	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-69157636-4	chr12	69157526	69157726	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009093)	TTS (NM_009093)	1560.0	NM_009093	20090.0	Mm.379006	NM_009093	ENSMUSG00000034892	Rps29	-	ribosomal protein S29	protein-coding	2.47178864901253	2.14264097513745	2.84630067424976	2.16368191071984	2.30333295628241	2.15757948876195	2.86793730064777	2.02970363732035	-0.126256186267865	0.877398149114308	0.998431161219273
Merged-chr15-57773384-2	chr15	57773284	57773484	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_199449, intron 2 of 3)	intron (NM_199449, intron 2 of 3)	78717.0	NM_199449	387609.0	Mm.36557	NM_199449	ENSMUSG00000071757	Zhx2	Afr-1|Afr1|Raf|mKIAA0854	zinc fingers and homeoboxes 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-104571185-4	chr8	104571073	104571273	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20295.0	NM_001024606	382051.0	Mm.290750	NM_001024606	ENSMUSG00000048371	Pdp2	4833426J09Rik|Gm1705|mKIAA1348	pyruvate dehyrogenase phosphatase catalytic subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-49202383-2	chr11	49202283	49202483	+	570.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1117.0	NM_001024846	22720.0	Mm.16650	NM_009562	ENSMUSG00000046311	Zfp62	-	zinc finger protein 62	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-90856578-1	chr8	90856478	90856678	+	559.0	f0_balb.idr	intron (NM_177224, intron 2 of 39)	intron (NM_177224, intron 2 of 39)	27743.0	NM_177224	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	1.87873324268921	1.83387920115619	1.61235340380808	2.08710211831136	1.89425629423505	1.2190730227184	1.78741369092716	2.58139683985875	0.317288153800649	0.758408762992808	0.998431161219273
Merged-chr2-155363624-2	chr2	155363521	155363721	+	725.083374	f0_balb.idr|f1_c57bl6.idr	Intergenic	(TTC)n|Simple_repeat|Simple_repeat	-6197.0	NM_001004721	228812.0	Mm.5434	NM_001004721	ENSMUSG00000038383	Pigu	5430426F17Rik|BC028278|Cdc91l1	phosphatidylinositol glycan anchor biosynthesis, class U	protein-coding	2.47669678166957	3.1160711032747	2.69225717642727	3.17221945870317	2.37722076843603	2.52407874605951	2.27188304658655	3.75969892555288	0.0302866712786357	0.967431788125123	0.998431161219273
Merged-chr7-80208942-3	chr7	80208881	80209081	+	975.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360135, intron 1 of 13)	intron (NM_001360135, intron 1 of 13)	10540.0	NM_001360135	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-50756966-2	chr5	50756866	50757066	+	738.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	504204.0	NR_106197	102465903.0		NR_106197	ENSMUSG00000099124	Mir8117	Gm27323|mmu-mir-8117	microRNA 8117	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-55238929-1	chr7	55238829	55239029	+	553.0	f1_balb.idr	intron (NM_178705, intron 9 of 11)	intron (NM_178705, intron 9 of 11)	403684.0	NM_178705	233271.0	Mm.387344	NM_178705	ENSMUSG00000063297	Luzp2	9330154K17Rik|D130073E01	leucine zipper protein 2	protein-coding	-1.17367364971587	-1.14665061133654	-1.15856004380685	-1.16834280623128	-1.17310571790619	-1.14406978763884	-0.42938571406771	-1.16659169643457	2.89727187181404	0.396361616615464	1
Merged-chr7-45873352-5	chr7	45873279	45873479	+	862.43335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133950, intron 1 of 4)	intron (NM_133950, intron 1 of 4)	539.0	NM_133950	68137.0	Mm.298433	NM_133950	ENSMUSG00000002778	Kdelr1	8030486F04Rik|AW215843|Erd2.1	KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69831237-2	chr11	69831137	69831337	+	759.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198862, intron 1 of 6)	intron (NM_198862, intron 1 of 6)	3612.0	NM_198862	216856.0	Mm.151293	NM_198862	ENSMUSG00000051790	Nlgn2	NL2|NLG2	neuroligin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-38428447-2	chr18	38428347	38428547	+	946.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355749, intron 1 of 7)	intron (NM_001355749, intron 1 of 7)	9540.0	NM_001355749	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30711807-2	chr2	30711707	30711907	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-9403.0	NR_037272	100526499.0		NR_037272	ENSMUSG00000093091	Mir3089	mir-3089|mmu-mir-3089	microRNA 3089	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-43967000-2	chr16	43966867	43967067	+	646.333374	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	12083.0	NM_001007460	332175.0	Mm.327852	NM_001007460	ENSMUSG00000036304	Zdhhc23	Gm1751|Gm779|nidd	zinc finger, DHHC domain containing 23	protein-coding	0.2616515204041	0.285967651830128	0.994297357305001	0.271925393025936	0.423361973405081	0.952609387639552	0.899311100483938	0.273000432407559	0.933353602314648	0.623920822147878	1
Merged-chr7-16313041-6	chr7	16312924	16313124	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133234, intron 2 of 3)	intron (NM_133234, intron 2 of 3)	3441.0	NM_133234	170770.0	Mm.7660	NM_133234	ENSMUSG00000002083	Bbc3	PUMA|PUMA/JFY1	BCL2 binding component 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-103927671-3	chr2	103927572	103927772	+	771.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26721.0	NR_131913	100996933.0	Mm.394449	NR_131913		Lincred1	-	long intergenic non-protein coding RNA of erythroid differentiation 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-120567283-1	chr6	120567183	120567383	+	814.0	f0_balb.idr	intron (NR_045733, intron 2 of 3)	intron (NR_045733, intron 2 of 3)	12487.0	NR_045733	73505.0	Mm.416867	NR_045733		1700072O05Rik	-	RIKEN cDNA 1700072O05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-98907385-3	chr10	98907328	98907528	+	944.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7214.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-76457074-3	chr11	76456978	76457178	+	870.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346670, intron 9 of 21)	intron (NM_001346670, intron 9 of 21)	11387.0	NM_001291186	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4752844-2	chr16	4752744	4752944	+	559.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010443, intron 1 of 5)	PB1D7|SINE|Alu	-4102.0	NM_001357050	15369.0	Mm.272866	NM_010443	ENSMUSG00000004070	Hmox2	HO-2|HO2	heme oxygenase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-61680944-2	chr14	61680844	61681044	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_028264, intron 1 of 6)	intron (NR_028264, intron 1 of 6)	1429.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-67113153-2	chr15	67113053	67113253	+	661.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009177, intron 4 of 8)	MLT1D|LTR|ERVL-MaLR	63729.0	NM_009177	20442.0	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	0.556131768544844	-0.177966472266967	-0.183401197351659	-0.187608726096849	0.570149214799136	-0.176744248994205	-0.182200734202892	-0.186872748852576	0.042017862341484	0.986649473535163	1
Merged-chr19-6923440-2	chr19	6923340	6923540	+	595.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039494, intron 3 of 4)	intron (NM_001039494, intron 3 of 4)	-1632.0	NM_007953	26379.0	Mm.386776	NM_007953	ENSMUSG00000024955	Esrra	ERRalpha|Err1|Estrra|Nr3b1	estrogen related receptor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-9574111-2	chr1	9574011	9574211	+	777.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357376, intron 12 of 12)	intron (NM_001357376, intron 12 of 12)	26163.0	NM_001357376	76187.0	Mm.28514	NM_175236	ENSMUSG00000025911	Adhfe1	6330565B14Rik|AI043035|Adh8|HOT	alcohol dehydrogenase, iron containing, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-31225078-4	chr15	31225017	31225217	+	974.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146057, intron 1 of 3)	intron (NM_146057, intron 1 of 3)	732.0	NM_146057	223453.0	Mm.222867	NM_146057	ENSMUSG00000039168	Dap	4921531N22Rik|AI789753|AU040360	death-associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-45271409-2	chr9	45271309	45271509	+	760.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2260.0	NM_001324486	16154.0	Mm.379327	NM_008348	ENSMUSG00000032089	Il10ra	AW553859|CDw210|CDw210a|IL-10R1|IL-10RA|Il10r|mIL-10R	interleukin 10 receptor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-88456874-3	chr1	88456761	88456961	+	858.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1E1A|LTR|ERVL-MaLR	49851.0	NM_029269	75396.0	Mm.173058	NM_029269	ENSMUSG00000026295	Spp2	0610038O04Rik|pp-24|spp24	secreted phosphoprotein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-75781895-2	chr2	75781795	75781995	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50282.0	NM_172666	228061.0	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-82462300-2	chr16	82462200	82462400	+	613.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	1261603.0	NM_010954	17968.0	Mm.433941	NM_010954	ENSMUSG00000022762	Ncam2	Ncam-2|Ocam|RNCAM	neural cell adhesion molecule 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-41770693-2	chr5	41770593	41770793	+	837.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-6473.0	NM_007524	12020.0	Mm.2530	NM_007524	ENSMUSG00000049691	Nkx3-2	Bapx1|NKX3.2|Nkx-3.2	NK3 homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100745263-3	chr11	100745149	100745349	+	643.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081194, exon 14 of 17)	exon (NM_001081194, exon 14 of 17)	-7034.0	NM_001305003	19345.0	Mm.29829	NM_024456	ENSMUSG00000019173	Rab5c	AI326010|Rabl	RAB5C, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-110967354-3	chr11	110967198	110967398	+	867.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252207)	promoter-TSS (NM_001252207)	-735.0	NM_010604	16517.0	Mm.30176	NM_010604	ENSMUSG00000051497	Kcnj16	6430410F18Rik|AI132396|Kir5.1	potassium inwardly-rectifying channel, subfamily J, member 16	protein-coding	1.16651637629113	1.33470193314601	0.989671585525628	0.960256843143128	1.72811895520509	2.39784217532225	3.29628382508519	2.51127350100217	4.50316393626561	0.000440065292216822	0.0100643298603519
Merged-chr13-23542697-3	chr13	23542565	23542765	+	784.25	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_178197)	TTS (NM_178197)	779.0	NM_178197	319182.0	Mm.352273	NM_178197	ENSMUSG00000114456	Hist1h2bh	H2b-221	histone cluster 1, H2bh	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-109129920-4	chr3	109129859	109130059	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172685, intron 1 of 9)	Lx8|LINE|L1	6810.0	NM_172685	229731.0	Mm.33574	NM_172685	ENSMUSG00000040322	Slc25a24	2610016M12Rik	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-90612819-3	chr3	90612729	90612929	+	718.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011313)	promoter-TSS (NM_011313)	-65.0	NM_011313	20200.0	Mm.100144	NM_011313	ENSMUSG00000001025	S100a6	2A9|5B10|CALCYCLIN|Cacy|PRA	S100 calcium binding protein A6 (calcyclin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-129398481-6	chr6	129398394	129398594	+	922.888916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001204253, intron 1 of 3)	RLTR21|LTR|ERVK	1197.0	NM_001204239	56760.0	Mm.30700	NM_019985	ENSMUSG00000030159	Clec1b	1810061I13Rik|Clec-2|Clec2	C-type lectin domain family 1, member b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-103131003-2	chr11	103130903	103131103	+	799.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2336.0	NM_001130516	71059.0	Mm.273871	NM_027658	ENSMUSG00000043372	Hexim2	4933402L21Rik	hexamethylene bis-acetamide inducible 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3346768-2	chr12	3346668	3346868	+	673.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18364.0	NM_008445	16570.0	Mm.7688	NM_008445	ENSMUSG00000020668	Kif3c	mKIAA4058	kinesin family member 3C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-96024132-2	chr9	96024032	96024232	+	555.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_011916, exon 31 of 42)	exon (NM_011916, exon 31 of 42)	69372.0	NM_011916	24127.0	Mm.291179	NM_011916	ENSMUSG00000032410	Xrn1	Dhm2|exo|mXrn1	5'-3' exoribonuclease 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-87772526-2	chr11	87772348	87772548	+	693.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172449, intron 16 of 31)	intron (NM_172449, intron 16 of 31)	11907.0	NM_172449	207777.0	Mm.342019	NM_172449	ENSMUSG00000034156	Tspoap1	Bzrap1|D230016K05|PRAX-1|mKIAA0612	TSPO associated protein 1	protein-coding	-1.33968511576914	-1.30956341409706	-1.31970802375329	-1.32804110817214	-0.94743229445443	-1.14774401221339	-1.31741150649064	-1.32654949004532	2.34703116667703	0.48488442496103	1
Merged-chr12-51938142-4	chr12	51938045	51938245	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177171, exon 13 of 36)	exon (NM_177171, exon 13 of 36)	33176.0	NM_177171	320487.0	Mm.131941	NM_177171	ENSMUSG00000035181	Heatr5a	C230081H03Rik|D930036F22Rik|mKIAA1316	HEAT repeat containing 5A	protein-coding	2.60050559143166	1.54454586428189	2.66358980474742	1.85137223711253	1.76288886395624	1.25782606704227	3.46103909371898	1.86189890769653	0.322378681319935	0.749557333575205	0.998431161219273
Merged-chr10-127622282-1	chr10	127622182	127622382	+	1000.0	f0_balb.idr	Intergenic	Intergenic	-1134.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-7976346-4	chr14	7976250	7976450	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007870, intron 5 of 7)	intron (NM_007870, intron 5 of 7)	17832.0	NM_007870	13421.0	Mm.272258	NM_007870	ENSMUSG00000025279	Dnase1l3	DNasegamma|Dhp2|Lsd	deoxyribonuclease 1-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-51616282-2	chr11	51616182	51616382	+	565.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-3491.0	NM_026631	52530.0	Mm.28203	NM_026631	ENSMUSG00000001056	Nhp2	2410130M07Rik|D11Ertd175e|Nola2	NHP2 ribonucleoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-117126796-2	chr4	117126733	117126933	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175030)	promoter-TSS (NM_175030)	20.0	NM_175030	242646.0	Mm.358914	NM_175030	ENSMUSG00000047671	Tctex1d4	4833401D15Rik	Tctex1 domain containing 4	protein-coding	-1.28451676766315	-1.25711067446772	-1.26714238771239	-0.980081947054919	-1.01484593254337	-1.25493676035931	-1.26487142772269	-1.27390771731504	-0.106098541793575	0.975485400703059	1
Merged-chr6-34939614-2	chr6	34939514	34939714	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_009292)	TTS (NM_009292)	18666.0	NM_009292	20899.0	Mm.5171	NM_009292	ENSMUSG00000029848	Stra8	-	stimulated by retinoic acid gene 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-144942363-5	chr7	144942219	144942419	+	830.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2394.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	1.07153330389813	1.84479320520085	2.16281009142232	1.46161998846224	1.24863856299305	0.939462326827294	0.919372336720124	2.10569078169831	-0.845951169843252	0.504925708020404	0.940939014262092
Merged-chr13-9776062-4	chr13	9775954	9776154	+	941.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10733.0	NM_144516	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124476587-4	chr5	124476472	124476672	+	779.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030259, intron 1 of 3)	intron (NM_030259, intron 1 of 3)	1663.0	NM_030259	80291.0	Mm.425280	NM_030259	ENSMUSG00000029401	Rilpl2	-	Rab interacting lysosomal protein-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-101763234-4	chr2	101763146	101763346	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355625, intron 3 of 8)	intron (NM_001355625, intron 3 of 8)	34461.0	NM_175181	72446.0	Mm.24138	NM_175181	ENSMUSG00000032841	Prr5l	2600010E01Rik|4833411O04Rik|Protor-2|Protor2	proline rich 5 like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-100702960-2	chr3	100702860	100703060	+	801.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17487.0	NM_010763	17156.0	Mm.271617	NM_010763	ENSMUSG00000008763	Man1a2	AI428775|AI528764|AI854422|Man1b|PCR2	mannosidase, alpha, class 1A, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35738030-4	chr17	35737928	35738128	+	954.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33429.0	NM_007584	12305.0	Mm.5021	NM_007584	ENSMUSG00000003534	Ddr1	6030432F18|AI323681|CD167a|Cak|Nep|PTK3A	discoidin domain receptor family, member 1	protein-coding	1.02867824560109	1.30486988955031	1.02519162428496	0.717212044515539	0.689327404633928	0.562831591922174	1.03538509878713	0.546411060658143	-1.69874618513746	0.275246675427609	1
Merged-chr2-174171280-4	chr2	174171180	174171380	+	935.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040530, intron 1 of 3)	Lx8|LINE|L1	12638.0	NR_040530	100038374.0	Mm.127249	NR_040530	ENSMUSG00000074555	Gm10714	-	predicted gene 10714	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-33209564-2	chr4	33209464	33209664	+	856.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_177774, intron 1 of 2)	CpG	573.0	NM_001356473	272009.0	Mm.156636	NM_177774	ENSMUSG00000054679	Srsf12	B830039L16|Sfrs13b|Srrp|Srsf13b	serine/arginine-rich splicing factor 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-23874673-2	chr17	23874575	23874775	+	942.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-6201.0	NM_019910	13184.0	Mm.371556	NM_019910	ENSMUSG00000096445	Dcpp1	BC005655|C86550|Dcpp|Dcpp-1|p20	demilune cell and parotid protein 1	protein-coding	3.98622703308915	3.75716843590545	4.7390237018274	4.65879099592126	4.01781255902455	3.23341450932474	3.74360697119615	3.91884713739745	-0.792341521365942	0.091734232490788	0.468411008021749
Merged-chr3-108299356-2	chr3	108299256	108299456	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019972, intron 1 of 19)	intron (NM_019972, intron 1 of 19)	15292.0	NM_019972	20661.0	Mm.157119	NM_019972	ENSMUSG00000068747	Sort1	2900053A11Rik|AI852375|Ntr3|Ntsr3	sortilin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-106540405-3	chr1	106540304	106540504	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009741, exon 2 of 2)	3' UTR (NM_009741, exon 2 of 2)	6227.0	NR_106164	102466254.0		NR_106164	ENSMUSG00000098344	Mir3473f	Gm27846|mmu-mir-3473f	microRNA 3473f	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3744232-3	chr12	3744153	3744353	+	664.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162465, intron 12 of 17)	intron (NM_001162465, intron 12 of 17)	-62727.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-7346107-4	chr9	7346097	7346297	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001320077, intron 1 of 10)	intron (NM_001320077, intron 1 of 10)	-1177.0	NM_001320076	17381.0	Mm.2055	NM_008605	ENSMUSG00000049723	Mmp12	AV378681|MME|Mmel	matrix metallopeptidase 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-106529942-4	chr4	106529841	106530041	+	973.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31097.0	NM_053272	74754.0	Mm.133370	NM_053272	ENSMUSG00000034926	Dhcr24	2310076D10Rik|5830417J06Rik|mKIAA0018	24-dehydrocholesterol reductase	protein-coding	1.7153645160986	1.66571593559311	1.44548218490409	1.22440265082842	1.3486281449859	1.04684100986534	2.42968398023917	2.0298887809373	0.938927287371083	0.411605117713046	0.894597257730009
Merged-chr16-97466700-2	chr16	97466600	97466800	+	646.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC1|LINE|L1	-3794.0	NR_003520	17857.0	Mm.33996	NM_010846	ENSMUSG00000000386	Mx1	AI893580|Mx|Mx-1	MX dynamin-like GTPase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-13673438-4	chr8	13673320	13673520	+	999.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 1 of 23)	intron (NM_009025, intron 1 of 23)	4167.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-20865319-3	chr5	20865263	20865463	+	759.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172992, intron 1 of 17)	intron (NM_172992, intron 1 of 17)	16761.0	NM_172992	68770.0	Mm.86410	NM_172992	ENSMUSG00000039987	Phtf2	1110054G21Rik|9530062N20Rik|AI447096|C77923	putative homeodomain transcription factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-37873366-2	chr6	37873266	37873466	+	767.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145076, intron 1 of 18)	intron (NM_145076, intron 1 of 18)	2555.0	NM_145076	21848.0	Mm.41063	NM_145076	ENSMUSG00000029833	Trim24	A130082H20Rik|AI447469|D430004I05Rik|TIF1|TIF1-alpha|TIF1alpha|Tif1a	tripartite motif-containing 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-36818951-3	chr19	36818843	36819043	+	942.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15289.0	NM_001163635	74493.0	Mm.249310	NM_001163635	ENSMUSG00000024811	Tnks2	5430432P15Rik|AA517131|AI662480|ARTD6|TNKS-2|Tank2	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase 2	protein-coding	2.51764016035774	1.46053023252223	2.51935331772014	2.55646556169687	1.7730962376802	2.85350536734211	2.53965372250776	3.36743216145406	0.844578848845952	0.327728690649512	0.830350093278487
Merged-chr15-35705734-4	chr15	35705653	35705853	+	970.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177151, intron 33 of 61)	intron (NM_177151, intron 33 of 61)	-44706.0	NR_030606	100124469.0		NR_030606	ENSMUSG00000077890	Mir875	Mirn875|mir-875|mmu-mir-875	microRNA 875	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-115037885-4	chr6	115037779	115037979	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026894)	promoter-TSS (NM_026894)	-5.0	NM_026894	68971.0	Mm.24937	NM_026894	ENSMUSG00000030316	Tamm41	1500001M20Rik|TAM41	TAM41 mitochondrial translocator assembly and maintenance homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83299006-4	chr11	83298908	83299108	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134025)	promoter-TSS (NM_134025)	-31.0	NM_134025	103737.0	Mm.102205	NM_134025	ENSMUSG00000018733	Pex12	AI451906	peroxisomal biogenesis factor 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-92490069-3	chr9	92489973	92490173	+	885.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_178711, exon 8 of 9)	exon (NM_178711, exon 8 of 9)	32695.0	NM_178711	235527.0	Mm.55289	NM_178711	ENSMUSG00000032377	Plscr4	AV245873	phospholipid scramblase 4	protein-coding	2.26825191536617	1.61188706675351	1.30756848514492	2.57799654801049	1.95326903509237	2.0328807892943	2.75972991936038	2.82096691442153	0.911716039229364	0.338492899694892	0.838823800351667
Merged-chr18-80204731-4	chr18	80204642	80204842	+	776.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB7|LINE|L1	-2056.0	NM_001038608	27366.0	Mm.172411	NM_025299	ENSMUSG00000057130	Txnl4a	D18Wsu98e|Dim1|Txnl4|U5-15kD|U5-15kDa	thioredoxin-like 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-42964730-1	chr4	42964630	42964830	+	890.0	f1_c57bl6.idr	Intergenic	Intergenic	-5216.0	NM_026088	67317.0	Mm.478018	NM_026088	ENSMUSG00000028451	1700022I11Rik	-	RIKEN cDNA 1700022I11 gene	protein-coding	2.81667422978235	3.15802605773631	2.44742079810403	2.71046583666366	1.38250343675456	2.23795538580475	3.15286806447866	2.51247733709555	-0.639733633175465	0.442873727911098	0.911647291190116
Merged-chr13-103411999-3	chr13	103411898	103412098	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-77506.0	NM_175171	328329.0	Mm.202606	NM_175171	ENSMUSG00000034751	Mast4	4930420O11Rik|AI642422|mKIAA0303	microtubule associated serine/threonine kinase family member 4	protein-coding	2.54261998972722	3.41616590288421	3.72889232091745	3.82433113622074	3.98049152477948	2.76663645329277	5.06026756948507	2.86285503710321	0.787625522119936	0.22801904548673	0.72106957756012
Merged-chr5-117903661-2	chr5	117903561	117903761	+	553.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008712, intron 7 of 27)	intron (NM_008712, intron 7 of 27)	36822.0	NM_008712	18125.0	Mm.44249	NM_008712	ENSMUSG00000029361	Nos1	2310005C01Rik|N-NOS|NC-NOS|NO|NOS|NOS-I|Nos-1|bNOS|nNOS	nitric oxide synthase 1, neuronal	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129592716-4	chr2	129592619	129592819	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291021)	promoter-TSS (NM_001291021)	-120.0	NM_001291020	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	0.0571784807760637	0.119633750174538	2.23987033841481	0.0846784067134367	0.0614024434170461	0.123856882062421	1.30593005526176	0.0874563050417521	-1.62506203582773	0.621574315975145	0.979537295922371
Merged-chr17-57421542-2	chr17	57421442	57421642	+	761.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355722, intron 12 of 22)	Lx5|LINE|L1	62856.0	NM_010130	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71366815-4	chr8	71366673	71366873	+	843.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145780)	promoter-TSS (NM_001145780)	-75.0	NM_001145780	67023.0	Mm.41890	NM_025917	ENSMUSG00000002395	Use1	2010315L10Rik|5730403H22Rik|AV002165|D12|Ed2|Q-snare|p31	unconventional SNARE in the ER 1 homolog (S. cerevisiae)	protein-coding	3.15957575775309	2.94053816488002	2.84072938984769	3.64975202679321	2.63754402401829	3.63205728262	3.08934738546168	3.1808488858544	-0.0279201213075653	0.964224293344084	0.998431161219273
Merged-chr1-128014141-4	chr1	128014030	128014230	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285945, intron 8 of 20)	B4|SINE|B4	88341.0	NM_027678	226409.0	Mm.425048	NM_027678	ENSMUSG00000036086	Zranb3	4933425L19Rik|AH2|AI316834|C730006D09	zinc finger, RAN-binding domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-108519026-4	chr4	108518930	108519130	+	652.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175472, intron 15 of 30)	ORR1F|LTR|ERVL-MaLR	59604.0	NM_175472	230594.0	Mm.25181	NM_175472	ENSMUSG00000034610	Zcchc11	6030404K05Rik|9230115F04Rik|PPAPD3|mKIAA0191	zinc finger, CCHC domain containing 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-32159401-3	chr9	32159325	32159525	+	911.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195632, intron 4 of 21)	intron (NM_001195632, intron 4 of 21)	43289.0	NM_001195632	330914.0	Mm.46683	NM_177379	ENSMUSG00000041444	Arhgap32	3426406O18Rik|Gc-gap|Grit|Px-rics|Rics|mKIAA0712|p200Rhogap|p250Gap	Rho GTPase activating protein 32	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-86803888-4	chr12	86803771	86803971	+	916.43335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	69502.0	NM_001195767	627607.0	Mm.341880	NM_001195767	ENSMUSG00000059114	Lrrc74a	EG627607|Gm6772|Lrrc74	leucine rich repeat containing 74A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133371682-2	chr4	133371582	133371782	+	566.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016981, intron 1 of 11)	intron (NM_016981, intron 1 of 11)	1906.0	NR_039582	100628620.0		NR_039582	ENSMUSG00000092745	Mir5122	mmu-mir-5122|mu-mir-5122	microRNA 5122	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167699660-2	chr2	167699560	167699760	+	599.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8483.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-78457268-3	chr10	78457125	78457325	+	788.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172134, intron 1 of 10)	intron (NM_172134, intron 1 of 10)	7723.0	NM_172134	216134.0	Mm.206159	NM_172134	ENSMUSG00000032788	Pdxk	2310036D04Rik|AA119688|C77999	pyridoxal (pyridoxine, vitamin B6) kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-31223250-2	chr15	31223150	31223350	+	683.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1135.0	NM_146057	223453.0	Mm.222867	NM_146057	ENSMUSG00000039168	Dap	4921531N22Rik|AI789753|AU040360	death-associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129913685-2	chr2	129913585	129913785	+	762.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-98655.0	NM_009374	21818.0	Mm.2961	NM_009374	ENSMUSG00000027401	Tgm3	AI893889|TG E|TG(E)|TGE|TGase E|TGase-3|we	transglutaminase 3, E polypeptide	protein-coding	2.33250847745339	1.48860197791807	2.35238023633942	1.15572250420805	1.11809201755305	2.34584954546639	2.79989972568129	2.1879571095277	0.71172590116983	0.516072884687621	0.947440957433756
Merged-chr17-5211046-4	chr17	5210950	5211150	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 4 of 19)	intron (NM_001085355, intron 4 of 19)	207717.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-104561449-2	chr1	104561349	104561549	+	565.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1VL2|LINE|L1	-207071.0	NM_011800	23836.0	Mm.103640	NM_011800	ENSMUSG00000050840	Cdh20	Cdh7	cadherin 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-44659716-4	chr10	44659601	44659801	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-200953.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-38228605-4	chr18	38228525	38228725	+	910.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-18863.0	NM_029357	75599.0	Mm.36560	NM_029357	ENSMUSG00000051375	Pcdh1	2010005A06Rik|AI585920	protocadherin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-65242579-3	chr13	65242521	65242721	+	928.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-36233.0	NM_178364	170936.0	Mm.151546	NM_178364	ENSMUSG00000021514	Zfp369	B930030B22Rik|D230020H11Rik|NRIF2	zinc finger protein 369	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-13439122-4	chr2	13439022	13439222	+	887.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081084, intron 22 of 66)	intron (NM_001081084, intron 22 of 66)	52754.0	NM_001081084	65969.0	Mm.313915	NM_001081084	ENSMUSG00000026726	Cubn	AA408369|AL022750|D2Wsu88e	cubilin (intrinsic factor-cobalamin receptor)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-111238080-2	chr13	111237980	111238180	+	711.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8649.0	NR_045908	73129.0	Mm.417826	NR_045908	ENSMUSG00000114824	3110015C05Rik	-	RIKEN cDNA 3110015C05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-73458869-3	chr13	73458756	73458956	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8527.0	NM_145376	210992.0	Mm.284649	NM_145376	ENSMUSG00000021608	Lpcat1	2900035H07Rik|Aytl2|BB137372|BC005662|C87117|LPCAT|rd11	lysophosphatidylcholine acyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45441609-2	chr7	45441509	45441709	+	620.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030678, intron 5 of 15)	intron (NM_030678, intron 5 of 15)	6770.0	NM_030678	14936.0	Mm.275654	NM_030678	ENSMUSG00000003865	Gys1	Gys3|MGS	glycogen synthase 1, muscle	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80677966-4	chr10	80677878	80678078	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1685.0	NM_021462	17347.0	Mm.42126	NM_021462	ENSMUSG00000020190	Mknk2	2010016G11Rik|Gprk7|Mnk2	MAP kinase-interacting serine/threonine kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-122117349-2	chr6	122117249	122117449	+	717.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVB4_2-I_MM-int|LTR|ERVK	-19279.0	NR_003624	381806.0	Mm.482418	NM_001013775	ENSMUSG00000071204	Gm10319	EG381806	murinoglobulin pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5662817-1	chr19	5662717	5662917	+	545.0	f1_balb.idr	5' UTR (NM_011379, exon 2 of 17)	5' UTR (NM_011379, exon 2 of 17)	890.0	NM_001164482	20469.0	Mm.3072	NM_011379	ENSMUSG00000056917	Sipa1	Spa1	signal-induced proliferation associated gene 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-33543707-2	chr5	33543607	33543807	+	786.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	83804.0	NM_001359461	74504.0	Mm.294695	NM_178390	ENSMUSG00000037339	Fam53a	2410018C17Rik|5430419M09Rik|Dntnp	family with sequence similarity 53, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-140844234-4	chr2	140844137	140844337	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013802, intron 4 of 18)	intron (NM_001013802, intron 4 of 18)	-172761.0	NM_178382	71436.0	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-119609759-2	chr13	119609659	119609859	+	907.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001039244, exon 3 of 3)	3' UTR (NM_001039244, exon 3 of 3)	-14060.0	NM_020279	56838.0	Mm.143745	NM_020279	ENSMUSG00000074715	Ccl28	CCK1|MEC|Scya28	chemokine (C-C motif) ligand 28	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-100421379-2	chr3	100421279	100421479	+	907.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5026.0	NR_040543	73806.0	Mm.396549	NR_040543	ENSMUSG00000086923	4930406D18Rik	-	RIKEN cDNA 4930406D18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100493702-3	chr7	100493621	100493821	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011671, intron 1 of 7)	intron (NM_011671, intron 1 of 7)	363.0	NM_011671	22228.0	Mm.171378	NM_011671	ENSMUSG00000033685	Ucp2	Slc25a8|UCP 2|UCPH	uncoupling protein 2 (mitochondrial, proton carrier)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-50201784-3	chr16	50201689	50201889	+	746.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027444, intron 15 of 16)	intron (NM_027444, intron 15 of 16)	-128937.0	NR_045935	224180.0	Mm.146439	NM_175010		Gm4827	B130050K08|EG224180	predicted gene 4827	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152901571-2	chr1	152901471	152901671	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001160257, intron 1 of 23)	intron (NM_001160257, intron 1 of 23)	1074.0	NM_001359257	226517.0	Mm.270775	NM_001005507	ENSMUSG00000042772	Smg7	9430023P16Rik|mKIAA0250	Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97339685-1	chr6	97339585	97339785	+	668.0	f1_balb.idr	intron (NM_145148, intron 8 of 23)	intron (NM_145148, intron 8 of 23)	-86905.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	-1.14149542847138	-0.33100028091332	-1.12720875772362	-1.13728867753953	-1.14086750656251	-1.11193125150289	-1.12436624874263	-1.1356767669541	-2.98824766641611	0.369648585513947	1
Merged-chr18-69400805-4	chr18	69400717	69400917	+	991.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 3 of 19)	intron (NM_001361128, intron 3 of 19)	54657.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-77268982-2	chr16	77268882	77269082	+	951.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60346.0	NR_015543	77994.0	Mm.394688	NR_015543	ENSMUSG00000090386	Mir99ahg	2810055G20Rik|D730043B02Rik	Mir99a and Mirlet7c-1 host gene (non-protein coding)	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-132602005-4	chr2	132601906	132602106	+	969.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033469, intron 1 of 3)	intron (NR_033469, intron 1 of 3)	3810.0	NR_033469	767814.0	Mm.371752	NR_033468	ENSMUSG00000074783	AU019990	-	expressed sequence AU019990	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-70244119-2	chr10	70244019	70244219	+	998.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1157.0	NM_025807	66859.0	Mm.19325	NM_025807	ENSMUSG00000037762	Slc16a9	1200003C15Rik|4930425B13Rik|AI552636	solute carrier family 16 (monocarboxylic acid transporters), member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-44665807-6	chr10	44665744	44665944	+	999.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-207096.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-75284315-4	chr14	75284209	75284409	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026083)	promoter-TSS (NM_026083)	-57.0	NM_001359875	67302.0	Mm.74704	NM_026083	ENSMUSG00000022000	Zc3h13	2600010B19Rik|3110050K21Rik|4930570G11Rik|C87618	zinc finger CCCH type containing 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-87836645-1	chr10	87836545	87836745	+	540.0	f1_balb.idr	Intergenic	Intergenic	-21620.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-97319843-2	chr3	97319743	97319943	+	645.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	91336.0	NM_146275	258272.0	Mm.377406	NM_146275	ENSMUSG00000051392	Olfr1402	MOR217-1	olfactory receptor 1402	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-53344687-3	chr15	53344623	53344823	+	971.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010162, exon 1 of 11)	exon (NM_010162, exon 1 of 11)	1460.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-62780618-4	chr4	62780520	62780720	+	930.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	106646.0	NM_001310706	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-166429206-4	chr1	166429098	166429298	+	997.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19370.0	NM_175170	71592.0	Mm.192094	NM_175170	ENSMUSG00000040596	Pogk	9130401E23Rik|BASS2|mKIAA1513	pogo transposable element with KRAB domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-182504430-4	chr1	182504334	182504534	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009794, intron 2 of 20)	intron (NM_009794, intron 2 of 20)	13176.0	NM_009794	12334.0	Mm.19306	NM_009794	ENSMUSG00000026509	Capn2	AI326419|CALP80|Capa-2|Capa2|m-calpain|m-calpin	calpain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-85512457-3	chr8	85512353	85512553	+	844.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173866, intron 6 of 11)	intron (NM_173866, intron 6 of 11)	19836.0	NM_173866	108682.0	Mm.200423	NM_173866	ENSMUSG00000031700	Gpt2	4631422C05Rik|ALT2|AU014768|AU041193|C87201	glutamic pyruvate transaminase (alanine aminotransferase) 2	protein-coding	1.64149979071204	0.894602610163808	0.877525505175029	1.92222277907466	1.33175662895668	1.88990234964474	1.58831264658466	0.866425324005243	0.152274248706842	0.911245911135805	0.998431161219273
Merged-chr9-49486163-4	chr9	49486069	49486269	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172770)	promoter-TSS (NM_172770)	56.0	NM_172770	235330.0	Mm.177413	NM_172770	ENSMUSG00000040219	Ttc12	E330017O07Rik	tetratricopeptide repeat domain 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-111370013-2	chr8	111369917	111370117	+	778.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178086, intron 1 of 6)	intron (NM_178086, intron 1 of 6)	23804.0	NM_178086	338521.0	Mm.41083	NM_178086	ENSMUSG00000033579	Fa2h	FAAH|Faxdc1|G630055L08Rik	fatty acid 2-hydroxylase	protein-coding	1.82538268442636	2.1882464148708	1.96942286092291	2.72785877535914	1.83943316986376	2.20407391802725	1.98406224774826	2.74178465846504	0.0347636636978314	0.968820260631809	0.998431161219273
Merged-chr13-59888063-2	chr13	59887963	59888163	+	622.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1I|LTR|ERVL-MaLR	-64916.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-35038790-4	chr12	35038692	35038892	+	977.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8397.0	NM_001014973	217463.0	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	3.36675272588145	3.37642744094335	4.24285646174319	4.60279948520644	3.8359993218622	4.72468313755049	4.75389131445616	4.66305310665219	0.690216061120719	0.140817288098243	0.585503385997659
Merged-chr18-20897795-2	chr18	20897695	20897895	+	910.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-1717.0	NM_177038	75964.0	Mm.273769	NM_029491	ENSMUSG00000033382	Trappc8	5033403J15Rik|AI845423|D030074E01Rik|Trs85|mKIAA1012	trafficking protein particle complex 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-53945506-4	chr19	53945433	53945633	+	827.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001195338)	promoter-TSS (NM_001195338)	657.0	NM_019658	56392.0	Mm.228669	NM_019658	ENSMUSG00000024976	Shoc2	AU017287|Sur8|mKIAA0862	soc-2 (suppressor of clear) homolog (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-72821315-2	chr5	72821215	72821415	+	632.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013689, intron 3 of 17)	intron (NM_013689, intron 3 of 17)	47133.0	NM_001113461	21682.0	Mm.319581	NM_013689	ENSMUSG00000029217	Tec	-	tec protein tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-20630279-2	chr16	20630179	20630379	+	622.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177942, intron 1 of 17)	intron (NM_177942, intron 1 of 17)	428.0	NM_139293	107522.0	Mm.263319	NM_139293	ENSMUSG00000022842	Ece2	1810009K13Rik|6330509A19Rik|9630025D12Rik|BB127715|Ece-2|Eef1akmt4-Ece2	endothelin converting enzyme 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-116050786-1	chr6	116050686	116050886	+	859.5	f0_balb.idr	intron (NM_177412, intron 3 of 5)	intron (NM_177412, intron 3 of 5)	-55781.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-58661135-2	chr5	58661035	58661235	+	730.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-208137.0	NR_046190	78163.0	Mm.243828	NR_046190	ENSMUSG00000105234	4930459L07Rik	-	RIKEN cDNA 4930459L07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-63592829-2	chr9	63592729	63592929	+	771.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030068, intron 3 of 21)	intron (NM_030068, intron 3 of 21)	9664.0	NM_030068	78250.0	Mm.444612	NM_030068	ENSMUSG00000037801	Iqch	4921504K03Rik	IQ motif containing H	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-130762767-3	chr7	130762659	130762859	+	879.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021314, intron 17 of 17)	intron (NM_021314, intron 17 of 17)	-11310.0	NM_001081038	330660.0	Mm.271550	NM_001081038	ENSMUSG00000040298	Btbd16	E330040A16Rik	BTB (POZ) domain containing 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-80048830-2	chr18	80048730	80048930	+	701.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_053117, intron 1 of 2)	intron (NM_053117, intron 1 of 2)	1935.0	NM_053117	93737.0	Mm.24678	NM_053117	ENSMUSG00000056214	Pard6g	2410049N21Rik|Par6a	par-6 family cell polarity regulator gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-133122240-7	chr7	133122197	133122397	+	854.238098	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009980, intron 1 of 10)	CpG	1186.0	NM_009980	13017.0	Mm.246240	NM_009980	ENSMUSG00000030970	Ctbp2	AA407280|D7Ertd45e|Gtrgeo6|Ribeye	C-terminal binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-41306342-2	chr4	41306242	41306442	+	812.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026893, intron 2 of 8)	B1_Mus1|SINE|Alu	8559.0	NM_026893	68970.0	Mm.28891	NM_026893	ENSMUSG00000028436	Dcaf12	1500001L20Rik|5830424K06Rik|AA420338|AI851081|Wdr40a	DDB1 and CUL4 associated factor 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-74788090-4	chr1	74788041	74788241	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3878.0	NM_009518	22409.0	Mm.5130	NM_009518	ENSMUSG00000026167	Wnt10a	-	wingless-type MMTV integration site family, member 10A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-94603216-4	chr4	94603115	94603315	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172695)	promoter-TSS (NM_172695)	32.0	NM_172695	18786.0	Mm.490101	NM_172695	ENSMUSG00000028577	Plaa	2410007N06|AI536418|AU018445|AW208417|D4Ertd618e|PLA2P|PLAP|Ufd3	phospholipase A2, activating protein	protein-coding	5.82908420558769	4.88182421187598	5.41240708375049	5.55058580569905	5.76380515402024	5.30486513881077	5.35554271991378	5.77842416824802	0.118372258485349	0.685671244929565	0.996533206832645
Merged-chr2-34767247-2	chr2	34767147	34767347	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-4843.0	NM_001163434	14828.0	Mm.330160	NM_022310	ENSMUSG00000026864	Hspa5	AL022860|AU019543|Bip|D2Wsu141e|D2Wsu17e|Grp78|Hsce70|SEZ-7|Sez7|baffled|mBiP	heat shock protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-84885487-2	chr2	84885387	84885587	+	591.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_199223, intron 1 of 2)	intron (NM_199223, intron 1 of 2)	1205.0	NM_199223	269295.0	Mm.86447	NM_199223	ENSMUSG00000050896	Rtn4rl2	Ngr2|Ngrh1|Ngrl3	reticulon 4 receptor-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-61087102-4	chr18	61087026	61087226	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18446.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28338315-2	chr7	28338215	28338415	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013676, intron 2 of 29)	CpG	404.0	NM_013676	20924.0	Mm.285906	NM_013676	ENSMUSG00000003435	Supt5	AL033283|AL033321|AU019549|Spt5|Supt5h	suppressor of Ty 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-113630100-4	chr3	113629920	113630120	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026043, exon 1 of 15)	exon (NM_026043, exon 1 of 15)	129.0	NM_001287015	67225.0	Mm.316928	NM_026043	ENSMUSG00000027981	Rnpc3	2810441O16Rik|AI447568|C030014B17Rik	RNA-binding region (RNP1, RRM) containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-98511485-4	chr15	98511392	98511592	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8342.0	NR_034051	100217417.0	Mm.486440	NR_034051	ENSMUSG00000065336	Snora34	MBI-89	small nucleolar RNA, H/ACA box 34	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-70251396-4	chr10	70251323	70251523	+	908.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025807, intron 1 of 5)	intron (NM_025807, intron 1 of 5)	6147.0	NM_025807	66859.0	Mm.19325	NM_025807	ENSMUSG00000037762	Slc16a9	1200003C15Rik|4930425B13Rik|AI552636	solute carrier family 16 (monocarboxylic acid transporters), member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-84117959-3	chr17	84117854	84118054	+	763.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39294.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-113751907-3	chr6	113751805	113752005	+	846.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001036684, intron 19 of 19)	intron (NM_001036684, intron 19 of 19)	-11224.0	NM_024206	110379.0	Mm.29296	NM_024206	ENSMUSG00000030298	Sec13	1110003H02Rik|Sec13l1|Sec13r	SEC13 homolog, nuclear pore and COPII coat complex component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95888862-4	chr3	95888765	95888965	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001346514, exon 3 of 6)	exon (NM_001346514, exon 3 of 6)	3140.0	NM_153513	229600.0	Mm.89556	NM_153513	ENSMUSG00000038543	BC028528	L259	cDNA sequence BC028528	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4214421-7	chr19	4214282	4214482	+	873.238098	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310039)	promoter-TSS (NM_001310039)	-7.0	NM_001310039	56708.0	Mm.347919	NM_019952	ENSMUSG00000040663	Clcf1	BSF-3|Bsf3|CLC|NNT-1	cardiotrophin-like cytokine factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-79396948-4	chr15	79396877	79397077	+	912.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172608, intron 1 of 8)	intron (NM_172608, intron 1 of 8)	5942.0	NM_001253817	223693.0	Mm.323358	NM_172608	ENSMUSG00000009035	Tmem184b	2610507A11|4732495E13Rik	transmembrane protein 184b	protein-coding	2.41535848641071	2.57437274248122	3.85618994378578	3.3824576642406	4.25215901433095	3.87392647759087	4.31813190211372	3.40032613476422	1.21097263322304	0.0370757911659511	0.274025878280748
Merged-chr9-66916053-2	chr9	66915953	66916153	+	796.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	3652.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-69140558-2	chr2	69140458	69140658	+	567.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_181547, intron 1 of 15)	intron (NM_181547, intron 1 of 15)	4758.0	NM_181547	329416.0	Mm.90047	NM_181547	ENSMUSG00000034738	Nostrin	Daip2|mDaIP2	nitric oxide synthase trafficker	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-21523099-2	chr12	21522953	21523153	+	778.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-105617.0	NM_011739	22630.0	Mm.289630	NM_011739	ENSMUSG00000076432	Ywhaq	2700028P07Rik|AA409740|AU021156|R74690	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	protein-coding	1.47192465129902	0.782209899935742	0.764055298810832	0.749655868383981	2.26843360247177	1.42821769673793	1.64100037621251	0.978452720219191	2.43921842866648	0.0833735210325973	0.442226129685722
Merged-chr1-128675739-3	chr1	128675669	128675869	+	698.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-83470.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	0.774151186101866	0.898152171113266	0.485126986430631	1.45628989048891	0.465114610434699	1.31694329288259	0.487461823874145	0.67172058664322	-0.756134508301245	0.645661761804727	0.984116759910594
Merged-chr3-103021509-1	chr3	103021409	103021609	+	1000.0	f0_c57.idr	intron (NM_001310693, intron 1 of 17)	intron (NM_001310693, intron 1 of 17)	963.0	NM_144901	229663.0	Mm.277713	NM_144901	ENSMUSG00000068823	Csde1	AA960392|BC016898|D3Jfr1|mKIAA0885|unr	cold shock domain containing E1, RNA binding	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-34195884-3	chr19	34195789	34195989	+	839.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360718, intron 1 of 10)	intron (NM_001360718, intron 1 of 10)	2955.0	NM_001360718	76630.0	Mm.130952	NM_029682	ENSMUSG00000024776	Stambpl1	1700095N21Rik|8230401J17Rik|ALMalpha|AMSH-FP	STAM binding protein like 1	protein-coding	-0.310211443525148	-0.458790048008212	-0.463985418998053	-0.468022896631458	-0.30567541864865	0.554896776826856	-0.462835919475352	-0.467315699887652	2.95755766627363	0.225711713439681	1
Merged-chr13-17755166-4	chr13	17755066	17755266	+	920.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027118, intron 5 of 13)	ORR1E|LTR|ERVL-MaLR	7693.0	NR_035412	100316665.0		NR_035412	ENSMUSG00000080574	Mir466i	Mirn466i|mmu-mir-466i	microRNA 466i	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-39781895-4	chr6	39781791	39781991	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29045.0	NM_010270	14548.0	Mm.377071	NM_010270	ENSMUSG00000029918	Mrps33	AI841153|CGI-139|Gdap3|MRP-S33|PTD003	mitochondrial ribosomal protein S33	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5238891-6	chr17	5238728	5238928	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 4 of 19)	intron (NM_001085355, intron 4 of 19)	179939.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-136121639-1	chr4	136121539	136121739	+	545.0	f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-22183.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	2.75479991021759	1.29330925611148	2.85702461963059	1.68389330823265	2.15162253035981	1.57874623177921	2.64295408645682	1.86579602890733	-0.456910612573557	0.646458465526189	0.984290440277058
Merged-chr2-51971702-2	chr2	51971602	51971802	+	647.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019401, intron 1 of 7)	intron (NM_019401, intron 1 of 7)	1506.0	NM_001141949	64685.0	Mm.7491	NM_019401	ENSMUSG00000026946	Nmi	-	N-myc (and STAT) interactor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-77623844-2	chr10	77623744	77623944	+	662.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019803, intron 1 of 5)	B3|SINE|B2	1523.0	NM_019803	22213.0	Mm.458125	NM_019803	ENSMUSG00000009293	Ube2g2	1110003O05Rik|D10Xrf369|UBC7|Ubc7p	ubiquitin-conjugating enzyme E2G 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180971077-2	chr1	180970977	180971177	+	768.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144794, intron 19 of 22)	B4A|SINE|B4	28559.0	NM_144794	208795.0	Mm.185518	NM_144794	ENSMUSG00000026519	Tmem63a	BC014795|Tmem64a	transmembrane protein 63a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-8843139-4	chr19	8843050	8843250	+	940.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008144, intron 3 of 10)	intron (NM_008144, intron 3 of 10)	2647.0	NM_001290823	14705.0	Mm.345134	NM_008144	ENSMUSG00000071657	Bscl2	2900097C17Rik|AI046355|Gng3lg	Berardinelli-Seip congenital lipodystrophy 2 (seipin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-61503862-2	chr11	61503762	61503962	+	717.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1282.0	NM_013717	27078.0	Mm.261226	NM_013717	ENSMUSG00000001039	B9d1	AW045994|B9|Eppb9	B9 protein domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-78302023-4	chr16	78301925	78302125	+	769.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025192, intron 1 of 6)	CpG	354.0	NM_001276263	13052.0	Mm.66222	NM_009988	ENSMUSG00000022865	Cxadr	2610206D03Rik|AU016810|AW553441|CAR|MCAR|MCVADR	coxsackie virus and adenovirus receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-113747436-2	chr6	113747336	113747536	+	784.325012	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001347365, exon 24 of 24)	3' UTR (NM_001347365, exon 24 of 24)	-6755.0	NM_024206	110379.0	Mm.29296	NM_024206	ENSMUSG00000030298	Sec13	1110003H02Rik|Sec13l1|Sec13r	SEC13 homolog, nuclear pore and COPII coat complex component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-27552249-4	chr7	27552142	27552342	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001317355, intron 1 of 13)	intron (NM_001317355, intron 1 of 13)	976.0	NM_011116	18807.0	Mm.6483	NM_011116	ENSMUSG00000003363	Pld3	Sam-9	phospholipase D family, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-21882207-2	chr10	21882107	21882307	+	814.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161845)	promoter-TSS (NM_001161845)	23.0	NM_001161845	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-76355458-4	chr16	76355342	76355542	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173440, intron 1 of 3)	ID4_|SINE|ID	17607.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-15595144-2	chr18	15595044	15595244	+	933.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_199055, intron 2 of 3)	RLTR20B3|LTR|ERVK	122902.0	NM_199055	71367.0	Mm.329304	NM_199055	ENSMUSG00000047161	Chst9	5430438D01Rik	carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91932743-2	chr2	91932643	91932843	+	668.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291483)	promoter-TSS (NM_001291483)	-446.0	NM_010784	17242.0	Mm.906	NM_010784	ENSMUSG00000027239	Mdk	MK|Mek	midkine	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-55949349-4	chr3	55949265	55949465	+	837.604187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030595, intron 33 of 57)	intron (NM_030595, intron 33 of 57)	102260.0	NR_033592	71182.0	Mm.195603	NR_033592	ENSMUSG00000106572	4933417G07Rik	-	SEC13 homolog pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-69724036-1	chr12	69723936	69724136	+	654.0	f1_c57bl6.idr	promoter-TSS (NM_001361690)	promoter-TSS (NM_001361690)	838.0	NM_145443	217666.0	Mm.103362	NM_145443	ENSMUSG00000020988	L2hgdh	BC016226	L-2-hydroxyglutarate dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-26962437-3	chr9	26962334	26962534	+	658.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37115.0	NM_025862	66948.0	Mm.289244	NM_025862	ENSMUSG00000031969	Acad8	2310016C19Rik|AI786953	acyl-Coenzyme A dehydrogenase family, member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132534445-1	chr4	132534345	132534545	+	602.0	f1_c57bl6.idr	intron (NM_007512, intron 1 of 3)	B1F2|SINE|Alu	969.0	NM_007512	11983.0	Mm.2171	NM_007512	ENSMUSG00000054428	Atpif1	Atpi|IF(1)|If1	ATPase inhibitory factor 1	protein-coding	0.324121201364939	0.0569073623157522	-0.144827148188466	-0.148760965348574	0.652396733701371	-0.138585371679123	-0.143703166841961	-0.148073502083646	0.589228911055589	0.801583093946646	1
Merged-chr1-40086867-2	chr1	40086767	40086967	+	763.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360800, intron 1 of 8)	MLT1E|LTR|ERVL-MaLR	774.0	NM_001360800	16178.0	Mm.1349	NM_010555	ENSMUSG00000026073	Il1r2	CD121b|Il1r-2	interleukin 1 receptor, type II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-31089889-3	chr7	31089797	31089997	+	883.8777470000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-13200.0	NM_008557	17178.0	Mm.263847	NM_008557	ENSMUSG00000057092	Fxyd3	Mat8	FXYD domain-containing ion transport regulator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-32803736-3	chr16	32803630	32803830	+	977.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6295.0	NM_001145874	224116.0	Mm.153301	NM_146071	ENSMUSG00000035638	Muc20	BC026367	mucin 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-166431655-2	chr1	166431555	166431755	+	591.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	-21827.0	NM_175170	71592.0	Mm.192094	NM_175170	ENSMUSG00000040596	Pogk	9130401E23Rik|BASS2|mKIAA1513	pogo transposable element with KRAB domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-41378131-1	chr12	41378031	41378231	+	697.0	f0_balb.idr	intron (NM_053122, intron 4 of 6)	intron (NM_053122, intron 4 of 6)	107926.0	NM_001271708	16981.0	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-81311920-2	chr7	81311820	81312020	+	830.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008803, intron 11 of 21)	intron (NM_008803, intron 11 of 21)	33314.0	NM_009092	20068.0	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30956866-4	chr7	30956767	30956967	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011680)	promoter-TSS (NM_011680)	-64.0	NM_011680	22282.0	Mm.322453	NM_011680	ENSMUSG00000058239	Usf2	Usf-2|bHLHb12	upstream transcription factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-23551647-4	chr13	23551529	23551729	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175655)	promoter-TSS (NM_175655)	14.0	NM_175655	319157.0	Mm.442307	NM_175655	ENSMUSG00000069274	Hist1h4f	-	histone cluster 1, H4f	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-44381710-4	chr10	44381598	44381798	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22022.0	NR_035450	100316688.0		NR_035450	ENSMUSG00000089260	Mir1929	mir-1929|mmu-mir-1929	microRNA 1929	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-47338102-2	chr19	47338002	47338202	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008018, intron 6 of 14)	MTD|LTR|ERVL-MaLR	-64513.0	NR_105961	102466782.0		NR_105961	ENSMUSG00000098786	Mir6995	Gm27576|mmu-mir-6995	microRNA 6995	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122894956-4	chr5	122894874	122895074	+	997.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003953, intron 12 of 22)	intron (NM_001003953, intron 12 of 22)	5376.0	NM_013910	30841.0	Mm.86406	NM_013910	ENSMUSG00000029475	Kdm2b	Cxxc2|Fbl10|Fbxl10|Jhdm1b|PCCX2	lysine (K)-specific demethylase 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-39529376-2	chr1	39529276	39529476	+	562.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20C1_MM|LTR|ERVK	-6325.0	NM_028043	52846.0	Mm.259421	NM_028043	ENSMUSG00000003135	Cnot11	2410015L18Rik|C40|D1Bwg0212e	CCR4-NOT transcription complex, subunit 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-82999149-3	chr15	82999053	82999253	+	671.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001271411, exon 6 of 6)	3' UTR (NM_001271411, exon 6 of 6)	23985.0	NM_028728	74039.0	Mm.32584	NM_028728	ENSMUSG00000058099	Nfam1	4921501M20Rik|Cnaip	Nfat activating molecule with ITAM motif 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-46833451-4	chr7	46833344	46833544	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12360.0	NM_010699	16828.0	Mm.29324	NM_010699	ENSMUSG00000063229	Ldha	Ldh1|Ldhm|l7R2	lactate dehydrogenase A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-44242780-4	chr16	44242601	44242801	+	964.792847	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198034, intron 24 of 24)	intron (NM_198034, intron 24 of 24)	69304.0	NM_001029889	207806.0	Mm.310566	NM_001029889	ENSMUSG00000068284	Usf3	5530400K22Rik|Gm1779|Gm608|mKIAA2018	upstream transcription factor family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-133659995-4	chr3	133659902	133660102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-115612.0	NM_001346736	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-20935589-2	chr5	20935489	20935689	+	703.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080977, intron 1 of 7)	RMER10A|LTR|ERVL	-15400.0	NR_030699	320770.0	Mm.491217	NR_030699	ENSMUSG00000101013	A630072M18Rik	Aptr	RIKEN cDNA A630072M18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-26493128-4	chr2	26493029	26493229	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008714, intron 2 of 33)	intron (NM_008714, intron 2 of 33)	10693.0	NM_008714	18128.0	Mm.290610	NM_008714	ENSMUSG00000026923	Notch1	9930111A19Rik|Mis6|N1|Tan1|lin-12	notch 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-58269027-4	chr9	58268946	58269146	+	924.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	15882.0	NM_026942	69106.0	Mm.216502	NM_026942	ENSMUSG00000032333	Stoml1	1810015E19Rik|AI847431|SLP1|STORP|UNC24|WPB72	stomatin-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-78306238-2	chr10	78306138	78306338	+	794.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_053014, intron 2 of 9)	intron (NM_053014, intron 2 of 9)	33969.0	NR_106119	102465765.0		NR_106119	ENSMUSG00000098885	Mir7659	Gm27433|mmu-mir-7659	microRNA 7659	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-181392756-3	chr2	181392625	181392825	+	831.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027656, intron 3 of 3)	intron (NM_027656, intron 3 of 3)	8475.0	NR_045164	329584.0	Mm.386906	NR_045164	ENSMUSG00000085028	Slc2a4rg-ps	C430010C01|Gm14462	Slc2a4 regulator, pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-87748838-4	chr11	87748766	87748966	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7998.0	NR_029555	387160.0		NR_029555	ENSMUSG00000105196	Mir142	Mirn142|miR-142|mir-142a|mmu-mir-142|mmu-mir-142a	microRNA 142	ncRNA	3.23317548018619	2.93845916682269	2.55437092351496	2.31328047248896	3.3916276434301	3.56540585176153	3.89934344196061	3.26785448405323	1.22695231173977	0.0458033022612244	0.308778557618375
Merged-chr7-72260981-3	chr7	72260944	72261144	+	829.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024703, intron 1 of 22)	Lx7|LINE|L1	45551.0	NM_001024703	244049.0	Mm.217412	NM_001024703	ENSMUSG00000032776	Mctp2	Gm489	multiple C2 domains, transmembrane 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-54932714-1	chr6	54932614	54932814	+	541.0	f1_balb.idr	intron (NM_001171007, intron 9 of 11)	MTEa|LTR|ERVL-MaLR	38947.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-55430453-4	chr1	55430359	55430559	+	903.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114663, intron 1 of 5)	intron (NM_001114663, intron 1 of 5)	24513.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	3.71672769128086	3.22139390902342	3.81117698351514	3.70275444495231	4.8148675636882	4.43646844974206	4.35315949767673	4.54961610534507	1.23825377916128	0.00387830955229071	0.0548294870483706
Merged-chr19-9952528-4	chr19	9952421	9952621	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-28079.0	NR_073181	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-103425879-2	chr5	103425779	103425979	+	741.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011204, intron 1 of 47)	intron (NM_011204, intron 1 of 47)	687.0	NM_011204	19249.0	Mm.3414	NM_011204	ENSMUSG00000034573	Ptpn13	AI324989|PTP-BL|PTPL1|Ptpri|RIP	protein tyrosine phosphatase, non-receptor type 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64797777-2	chr5	64797677	64797877	+	776.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5746.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-112934067-2	chr12	112933967	112934167	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_025399)	TTS (NM_025399)	-4572.0	NM_010588	16450.0	Mm.186146	NM_010588	ENSMUSG00000002799	Jag2	D12Ggc2e|Serh|mJagged2-1|sm	jagged 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106687536-3	chr11	106687437	106687637	+	760.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305158, intron 6 of 14)	intron (NM_001305158, intron 6 of 14)	27744.0	NM_001305158	18613.0	Mm.343951	NM_008816	ENSMUSG00000020717	Pecam1	C85791|Cd31|PECAM-1|Pecam	platelet/endothelial cell adhesion molecule 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-40756598-4	chr9	40756515	40756715	+	862.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133733, intron 1 of 6)	intron (NM_133733, intron 1 of 6)	-44658.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	1.56635023216275	2.44116748496786	1.34031971948601	1.90562080385631	1.43336663927826	2.27555461389641	1.34906718655589	1.65773393063691	-0.424410573668032	0.689301023636871	0.996533206832645
Merged-chr11-120583515-2	chr11	120583378	120583578	+	802.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	-1858.0	NM_133796	192662.0	Mm.30016	NM_133796	ENSMUSG00000025132	Arhgdia	5330430M07Rik|Gdi-1|Rho-GDI|RhoDGI|RhoGDI-1	Rho GDP dissociation inhibitor (GDI) alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30586100-1	chr7	30586000	30586200	+	551.0	f1_balb.idr	exon (NM_001290573, exon 3 of 37)	exon (NM_001290573, exon 3 of 37)	2626.0	NM_001290573	75410.0	Mm.168688	NM_029274	ENSMUSG00000006307	Kmt2b	2610014H22Rik|Mll2|Wbp7|mKIAA0304	lysine (K)-specific methyltransferase 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5074798-2	chr19	5074698	5074898	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	6720.0	NM_054042	70445.0	Mm.29597	NM_054042	ENSMUSG00000056481	Cd248	2610111G01Rik|AI842296|Cd164l1|Tem1	CD248 antigen, endosialin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-125364094-4	chr5	125364000	125364200	+	991.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23006.0	NM_001205083	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-4504906-4	chr7	4504801	4505001	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360154, intron 12 of 12)	intron (NM_001360154, intron 12 of 12)	-3221.0	NM_029834	232807.0	Mm.360391	NM_029834	ENSMUSG00000019254	Ppp1r12c	2410197A17Rik|AI839747|B430101M08|Mbs85	protein phosphatase 1, regulatory (inhibitor) subunit 12C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-181125343-4	chr1	181125245	181125445	+	715.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026171, intron 10 of 22)	ORR1D1|LTR|ERVL-MaLR	18859.0	NM_026171	67459.0	Mm.263464	NM_026171	ENSMUSG00000026516	Nvl	1200009I24Rik	nuclear VCP-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-99137906-2	chr9	99137806	99138006	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029094, intron 1 of 23)	ID_B1|SINE|B4	2305.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-59493709-3	chr2	59493613	59493813	+	747.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029723, intron 1 of 3)	intron (NM_029723, intron 1 of 3)	9060.0	NM_029723	76747.0	Mm.275769	NM_029723	ENSMUSG00000026989	Dapl1	2310032F03Rik|EEDA	death associated protein-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-10990109-4	chr16	10989988	10990188	+	990.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019980, intron 1 of 3)	B3A|SINE|B2	3033.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-132160869-2	chr1	132160769	132160969	+	610.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21184.0	NM_008795	18557.0	Mm.28130	NM_008795	ENSMUSG00000026437	Cdk18	AA682070|Ctk18|Pctk3	cyclin-dependent kinase 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-4573499-4	chr2	4573411	4573611	+	958.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177844, intron 3 of 11)	MTD|LTR|ERVL-MaLR	13757.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-4356009-3	chr18	4355898	4356098	+	586.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040328, intron 2 of 3)	ORR1B1|LTR|ERVL-MaLR	2451.0	NR_040328	73915.0	Mm.482777	NR_040328		4833419F23Rik	-	RIKEN cDNA 4833419F23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-18012905-2	chr5	18012805	18013005	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081143, intron 5 of 7)	B1F2|SINE|Alu	50335.0	NM_001081143	242851.0	Mm.332230	NM_001081143	ENSMUSG00000028777	Gnat3	Ggust|Gtn	guanine nucleotide binding protein, alpha transducing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-3833405-2	chr10	3833305	3833505	+	556.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159942, intron 2 of 16)	intron (NM_001159942, intron 2 of 16)	-39262.0	NM_001033253	213783.0	Mm.150831	NM_001033253	ENSMUSG00000040624	Plekhg1	D10Ertd733e|Gm521|mKIAA1209	pleckstrin homology domain containing, family G (with RhoGef domain) member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-75435367-3	chr9	75435252	75435452	+	874.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C|LTR|ERVK	-6172.0	NM_001039522	235497.0	Mm.41508	NM_001006122	ENSMUSG00000042487	Leo1	Gm185	Leo1, Paf1/RNA polymerase II complex component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-63079106-4	chr14	63078990	63079190	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	24017.0	NR_046019	72609.0	Mm.387101	NR_046019		2700070H01Rik	-	RIKEN cDNA 2700070H01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118610763-4	chr9	118610656	118610856	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 1 of 27)	intron (NM_133721, intron 1 of 27)	4047.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-75783284-2	chr7	75783184	75783384	+	738.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65054.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-24441545-2	chr2	24441445	24441645	+	604.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011040, intron 5 of 11)	intron (NM_011040, intron 5 of 11)	34054.0	NM_011040	18510.0	Mm.2533	NM_011040	ENSMUSG00000026976	Pax8	Pax-8	paired box 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10183618-5	chr19	10183568	10183768	+	834.866638	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146094, intron 1 of 11)	intron (NM_146094, intron 1 of 11)	780.0	NM_146094	76267.0	Mm.30158	NM_146094	ENSMUSG00000010663	Fads1	0710001O03Rik|A930006B21Rik|AI317215|DSD	fatty acid desaturase 1	protein-coding	0.960891001641004	1.09972652283583	0.647492860554086	0.635979300827442	1.9868533384204	1.10947569464201	1.48163691510907	0.638006693788432	2.3079076211632	0.124265094970305	0.552249014968455
Merged-chr2-90847144-4	chr2	90847052	90847252	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001317241)	promoter-TSS (NM_001317241)	-3.0	NM_001317241	56428.0	Mm.28023	NM_019758	ENSMUSG00000027282	Mtch2	2310034D24Rik|4930539J07Rik|HSPC032	mitochondrial carrier 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-78935453-2	chr17	78935364	78935564	+	676.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001024806, exon 2 of 16)	exon (NM_001024806, exon 2 of 16)	1606.0	NM_001024806	12607.0	Mm.24169	NM_009882	ENSMUSG00000024081	Cebpz	AI848081|CBF2|Cbf|Cebpa-rs1	CCAAT/enhancer binding protein zeta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-55863182-3	chr12	55863064	55863264	+	914.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001037756, exon 8 of 10)	exon (NM_001037756, exon 8 of 10)	26798.0	NR_155205	52592.0	Mm.24761	NM_027867	ENSMUSG00000012076	Brms1l	0710008O11Rik|AI159718|BRMS1|D12Ertd407e	breast cancer metastasis-suppressor 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-50431625-4	chr11	50431501	50431701	+	810.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172557)	promoter-TSS (NM_172557)	-490.0	NM_172557	216724.0	Mm.390400	NM_172557	ENSMUSG00000020375	Rufy1	3000002E04Rik|Rabip4|ZFYVE12	RUN and FYVE domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-83852221-4	chr7	83852188	83852388	+	852.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32053.0	NM_030705	80889.0	Mm.272998	NM_030705	ENSMUSG00000070462	Tlnrd1	AW061151|Mesdc1	talin rod domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-40677354-1	chr19	40677254	40677454	+	1000.0	f1_c57bl6.idr	intron (NM_009848, intron 1 of 9)	intron (NM_009848, intron 1 of 9)	17584.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26941328-2	chr17	26941228	26941428	+	577.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001281491)	promoter-TSS (NM_001281491)	-124.0	NM_001281491	240057.0	Mm.328888	NM_001281491	ENSMUSG00000067629	Syngap1	Gm1963|Syngap	synaptic Ras GTPase activating protein 1 homolog (rat)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-87566724-2	chr3	87566618	87566818	+	837.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	41140.0	NM_001359750	27049.0	Mm.219460	NM_012051	ENSMUSG00000003382	Etv3	AI414410|METS|Pe1	ets variant 3	protein-coding	4.32525553390356	4.48743676351016	4.68708380598113	4.45545814969782	3.01827029311612	3.02154617082086	3.50672185540777	2.94583762416043	-1.91789460539582	4.84179827477486e-05	0.00168871789827758
Merged-chr6-59178809-2	chr6	59178709	59178909	+	615.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	-30061.0	NM_001081145	68140.0	Mm.25843	NM_001081145	ENSMUSG00000049232	Tigd2	3632410O17Rik	tigger transposable element derived 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-44938605-2	chr8	44938505	44938705	+	599.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-11603.0	NM_001081286	14107.0	Mm.27365	NM_001081286	ENSMUSG00000070047	Fat1	2310038E12Rik|AU023433|Fath|mFat1	FAT atypical cadherin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-9249906-4	chr3	9249817	9250017	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177660)	promoter-TSS (NM_177660)	-650.0	NM_177660	229055.0	Mm.103262	NM_177660	ENSMUSG00000069114	Zbtb10	4832414A18|AU021107|RINZF	zinc finger and BTB domain containing 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-63868985-3	chr4	63868887	63869087	+	832.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7703.0	NM_009403	21949.0	Mm.4664	NM_009403	ENSMUSG00000028362	Tnfsf8	CD153|CD30LG|Cd30l|Tnlg3a	tumor necrosis factor (ligand) superfamily, member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-124019908-2	chr8	124019808	124020008	+	758.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133966, intron 1 of 4)	MIR|SINE|MIR	1148.0	NM_001357315	102162.0	Mm.291777	NM_133966	ENSMUSG00000038697	Taf5l	1110005N04Rik|AI849020	TATA-box binding protein associated factor 5 like	protein-coding	0.659758793671033	0.489574226368288	0.279279109470611	0.931907657458867	1.0979900867186	0.288372350017987	0.280920120408016	0.274530335643562	-0.318347551257689	0.86766385468259	1
Merged-chr8-24420553-4	chr8	24420454	24420654	+	821.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18392.0	NM_026931	69068.0	Mm.25775	NM_026931	ENSMUSG00000056313	Tcim	1110065B09Rik|1810011O10Rik|AW121743|AW321058	transcriptional and immune response regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-73849965-3	chr8	73849857	73850057	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-496417.0	NM_010687	16795.0	Mm.324371	NM_010687	ENSMUSG00000004383	Large1	BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd	LARGE xylosyl- and glucuronyltransferase 1	protein-coding	0.242777946035282	-0.33348585944614	-0.338381087247241	-0.342169575304175	-0.347541152022259	0.436472689412353	-0.337299956221371	-0.341506988246422	0.570709513030017	0.827372417853504	1
Merged-chr14-50832328-1	chr14	50832228	50832428	+	571.0	f1_balb.idr	intron (NM_009351, intron 43 of 54)	B3A|SINE|B2	24412.0	NM_009632	11546.0	Mm.281482	NM_009632	ENSMUSG00000036023	Parp2	ADPRT-2|ARTD2|Adprt2|Adprtl2|Aspartl2|C78626|PARP-2|mPARP-2|pADPRT-2	poly (ADP-ribose) polymerase family, member 2	protein-coding	-0.583449067377857	-1.02282152578373	-1.03400008326803	-1.03822883962362	-0.777224525718346	-1.02039908574442	-1.03146950288059	-1.03789690212328	-0.791518325477985	0.808258493497815	1
Merged-chr2-34646456-4	chr2	34646360	34646560	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	108772.0	NM_001356441	66691.0	Mm.156452	NM_025709	ENSMUSG00000026867	Gapvd1	2010005B09Rik|4432404J10Rik|AW108497|Gapex-5|RAP6|RME-6|mKIAA1521	GTPase activating protein and VPS9 domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-84200100-4	chr1	84199995	84200195	+	905.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003948, intron 1 of 2)	MLT1H1|LTR|ERVL-MaLR	18866.0	NR_105771	102465181.0		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-55307281-1	chr9	55307181	55307381	+	653.0	f0_balb.idr	Intergenic	Intergenic	-19632.0	NM_172923	244886.0	Mm.24361	NM_172923	ENSMUSG00000032313	Tmem266	9630029F15|AI118078|HVRP1	transmembrane protein 266	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-21566294-4	chr10	21566201	21566401	+	903.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26844.0	NR_027968	67692.0	Mm.54306	NM_183266	ENSMUSG00000050844	1700020N01Rik	-	RIKEN cDNA 1700020N01 gene	ncRNA	3.07489329620922	3.71256002328972	3.24665267320997	4.35294898962916	2.24806771100646	3.16528093280938	3.36849985396202	3.71290782878189	-0.72544860582758	0.243257034152667	0.740751247850617
Merged-chr16-14378812-4	chr16	14378688	14378888	+	964.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008576, intron 1 of 30)	intron (NM_008576, intron 1 of 30)	17230.0	NM_008576	17250.0	Mm.196634	NM_008576	ENSMUSG00000023088	Abcc1	Abcc1a|Abcc1b|MRP|Mdrap|Mrp1	ATP-binding cassette, sub-family C (CFTR/MRP), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-94167434-4	chr8	94167352	94167552	+	903.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1E1|LTR|ERVL-MaLR	-5166.0	NM_008630	17750.0	Mm.147226	NM_008630	ENSMUSG00000031762	Mt2	AA409533|MT-II|Mt-2	metallothionein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-30722531-4	chr16	30722430	30722630	+	922.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	122807.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	0.522356497649158	0.46756933554891	0.942193816009537	0.897071928332433	0.252313799522785	0.472701765812456	0.266475969879328	0.26065526749683	-3.38181702684528	0.0674331626493068	1
Merged-chr7-25424655-2	chr7	25424555	25424755	+	974.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_015569, intron 4 of 6)	intron (NR_015569, intron 4 of 6)	-11769.0	NM_153576	232983.0	Mm.10545	NM_153576	ENSMUSG00000060188	Cxcl17	VCC-1|Vcc1	chemokine (C-X-C motif) ligand 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122371437-1	chr5	122371337	122371537	+	553.0	f1_balb.idr	intron (NM_026883, intron 1 of 6)	B1_Mus1|SINE|Alu	526.0	NM_026883	68948.0	Mm.474469	NM_026883	ENSMUSG00000029463	Fam216a	1500011H22Rik	family with sequence similarity 216, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21923526-2	chr9	21923426	21923626	+	644.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045606, intron 3 of 4)	intron (NR_045606, intron 3 of 4)	3762.0	NM_001253869	235043.0	Mm.253329	NM_178577	ENSMUSG00000040883	Tmem205	-	transmembrane protein 205	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-65785898-2	chr17	65785774	65785974	+	750.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_152099, intron 2 of 20)	RLTR13D2|LTR|ERVK	2519.0	NR_104465	70351.0	Mm.48686	NM_146081	ENSMUSG00000061950	Ppp4r1	3110001J10Rik|Pp4r1	protein phosphatase 4, regulatory subunit 1	protein-coding	1.54582497095704	1.02005588194284	1.00268737468495	1.50434004500792	1.84552388773457	1.87853352642943	1.91747315534087	1.5119640764251	1.74667744894932	0.143855282460348	0.592575765264107
Merged-chr5-105616818-4	chr5	105616703	105616903	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-83166.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-59165982-2	chr2	59165882	59166082	+	931.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 1 of 20)	B1_Mus1|SINE|Alu	5132.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-36655510-2	chr16	36655410	36655610	+	590.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019388, intron 1 of 7)	intron (NM_019388, intron 1 of 7)	10567.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43010280-4	chr4	43010151	43010351	+	962.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163233)	promoter-TSS (NM_001163233)	50.0	NM_001163233	60534.0	Mm.23122	NM_053081	ENSMUSG00000028453	Fancg	AU041407|Xrcc9	Fanconi anemia, complementation group G	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-63766835-2	chr5	63766735	63766935	+	835.583313	f1_balb.idr|f1_c57bl6.idr	intron (NM_177006, intron 3 of 6)	intron (NM_177006, intron 3 of 6)	-45660.0	NM_029554	76261.0	Mm.38143	NM_029554	ENSMUSG00000060512	0610040J01Rik	AI662686	RIKEN cDNA 0610040J01 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-9428074-4	chr15	9427968	9428168	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7960.0	NM_029341	75568.0	Mm.82143	NM_029341	ENSMUSG00000039676	Capsl	1700028N11Rik|AW125205	calcyphosine-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-121661059-2	chr5	121660963	121661163	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028037)	promoter-TSS (NM_028037)	194.0	NM_001289544	72399.0	Mm.153372	NM_028227	ENSMUSG00000029458	Brap	3010002G07Rik|BRAP2|IMP	BRCA1 associated protein	protein-coding	1.66775924792856	1.14309270200777	1.72173019874943	2.31171985083792	1.47244603391534	1.15093481214296	0.879552331563624	0.863092900749939	-2.33877407174784	0.0705098261217701	0.399422518323417
Merged-chr5-112973793-4	chr5	112973697	112973897	+	845.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285806, intron 2 of 20)	intron (NM_001285806, intron 2 of 20)	41741.0	NM_001285806	320129.0	Mm.285619	NM_177078	ENSMUSG00000042249	Grk3	4833444A01Rik|AI851927|AW551196|Adrbk-2|Adrbk2|Bark-2	G protein-coupled receptor kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91197745-2	chr2	91197645	91197845	+	975.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2629.0	NM_001177730	22259.0	Mm.22690	NM_013839	ENSMUSG00000002108	Nr1h3	AU018371|LXR|RLD1|Unr1	nuclear receptor subfamily 1, group H, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-48395759-5	chr6	48395633	48395833	+	837.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_152251)	promoter-TSS (NR_152251)	147.0	NM_001362144	77827.0	Mm.107646	NM_133922	ENSMUSG00000042810	Krba1	A930040G15Rik|AI448780	KRAB-A domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-59642096-2	chr11	59641996	59642196	+	721.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-20399.0	NM_201245	26936.0	Mm.2402	NM_012027	ENSMUSG00000005417	Mprip	9530046C02|AA536749|AI647711|C76423|Gm34094|RIP3|Rhoip3|mKIAA0864|p116Rip	myosin phosphatase Rho interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116437967-2	chr11	116437867	116438067	+	632.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_176902, intron 2 of 2)	intron (NM_176902, intron 2 of 2)	3754.0	NR_003376	664849.0	Mm.258466	NR_003376		Gm7367	EG664849	1110014K08Rik pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111150412-2	chr12	111150312	111150512	+	813.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15958.0	NM_001286122	22031.0	Mm.27431	NM_011632	ENSMUSG00000021277	Traf3	AI528849|CAP-1|CD40bp|CRAF1|LAP1|T-BAM|amn	TNF receptor-associated factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89386211-1	chr3	89386111	89386311	+	553.0	f1_c57bl6.idr	intron (NM_001355206, intron 1 of 3)	intron (NM_001355206, intron 1 of 3)	1460.0	NM_001355212	22724.0	Mm.262184	NM_009565	ENSMUSG00000028042	Zbtb7b	Thpok|Zfp67|c-Krox	zinc finger and BTB domain containing 7B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-124793406-3	chr8	124793274	124793474	+	836.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_198632, exon 1 of 10)	5' UTR (NM_198632, exon 1 of 10)	355.0	NM_198632	330863.0	Mm.422769	NM_198632	ENSMUSG00000036913	Trim67	D130049O21Rik|TNL	tripartite motif-containing 67	protein-coding	1.09422533711226	2.01900126543732	1.94703870202658	1.37662182724942	2.38410620300007	2.76987013362489	1.42263452406797	2.24852469990758	1.62190351776882	0.121606875858169	0.547110574369792
Merged-chr17-71596993-3	chr17	71596813	71597013	+	644.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027953, intron 1 of 2)	intron (NR_027953, intron 1 of 2)	1368.0	NR_027953	68789.0	Mm.75202	NR_015549	ENSMUSG00000085492	Trmt61b	1110039F03Rik|623451|Gm6431	tRNA methyltransferase 61B	ncRNA	1.58604139800534	2.69935914424763	1.73634337978662	1.18348643814924	2.86580488521437	3.00036549797061	3.11557444047771	1.18950747256066	1.64264381662242	0.106135088013964	0.508286176951278
Merged-chr6-128759685-2	chr6	128759581	128759781	+	989.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	28960.0	NM_001159904	17059.0	Mm.480764	NM_008527	ENSMUSG00000030325	Klrb1c	AI462337|CD161|Klrb1b|Ly-59|Ly55c|Ly59|NK-RP1|NK1.1|NKR-P1.9|NKRP1|NKRP140|Nk-1|Nk-1.2|Nk1|Nk1.2|Nkrp1b|Nkrp1c|ly-55c	killer cell lectin-like receptor subfamily B member 1C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-45174056-4	chr16	45173959	45174159	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356366, intron 4 of 10)	Lx8|LINE|L1	15230.0	NM_026402	67841.0	Mm.41775	NM_026402	ENSMUSG00000022663	Atg3	2610016C12Rik|APG3|Apg3l|Atg3l|PC3-96	autophagy related 3	protein-coding	3.88848836985857	4.07469384345683	4.20568582904797	4.40748116060137	4.27603973829068	4.6965827340934	4.17524906213402	4.56100387663461	0.373246696030971	0.353578794156165	0.853132398390271
Merged-chr11-31719592-1	chr11	31719492	31719692	+	648.0	f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	-47730.0	NM_001024919	69556.0	Mm.34183	NM_001024919	ENSMUSG00000044502	Bod1	2310022M17Rik|BOD2.1|Fam44b	biorientation of chromosomes in cell division 1	protein-coding	1.395376008033	1.04526013893897	1.00173417818425	0.554717213161813	0.5471431864731	1.05491356627611	0.56165538207812	0.555657264933106	-2.09521822133596	0.233705093199035	0.729193925503299
Merged-chr7-143041695-4	chr7	143041610	143041810	+	921.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110355, intron 2 of 4)	intron (NR_110355, intron 2 of 4)	-11040.0	NM_133655	12520.0	Mm.806	NM_133655	ENSMUSG00000037706	Cd81	Tapa-1|Tapa1|Tspan28	CD81 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-82019024-2	chr11	82018924	82019124	+	677.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16553.0	NM_011333	20296.0	Mm.290320	NM_011333	ENSMUSG00000035385	Ccl2	AI323594|HC11|JE|MCAF|MCP-1|MCP1|SMC-CF|Scya2|Sigje	chemokine (C-C motif) ligand 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-104569613-4	chr9	104569516	104569716	+	824.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_028719, exon 1 of 16)	5' UTR (NM_028719, exon 1 of 16)	133.0	NM_028719	74020.0	Mm.326240	NM_028719	ENSMUSG00000032564	Cpne4	3632411M23Rik|4933406O10Rik	copine IV	protein-coding	-0.695201985804855	-0.686215238149216	-0.689175795674284	-0.404419854949823	-0.240371705854086	-0.498627206693393	-0.688524178122579	-0.691052668746819	1.17553800475546	0.672917198464564	1
Merged-chr12-68874969-2	chr12	68874869	68875069	+	749.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MamGypLTR1b|LTR|Gypsy	284217.0	NM_009093	20090.0	Mm.379006	NM_009093	ENSMUSG00000034892	Rps29	-	ribosomal protein S29	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-121405380-4	chr14	121405284	121405484	+	862.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26154.0	NM_145465	223255.0	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-151343200-4	chr1	151343104	151343304	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1282.0	NM_001359262	117198.0	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30045008-2	chr2	30044908	30045108	+	862.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001008498, intron 1 of 8)	B1_Mur4|SINE|Alu	3871.0	NM_001008498	71820.0	Mm.88053	NM_001008498	ENSMUSG00000039715	Wdr34	3200002I06Rik	WD repeat domain 34	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80167667-4	chr10	80167560	80167760	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007705)	promoter-TSS (NM_007705)	-179.0	NM_007705	12696.0	Mm.17898	NM_007705	ENSMUSG00000045193	Cirbp	Cirp|R74941	cold inducible RNA binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126863880-3	chr8	126863777	126863977	+	741.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	14857.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120748286-4	chr11	120748180	120748380	+	936.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16_Mm|LTR|ERVK	-16259.0	NM_007621	12409.0	Mm.21454	NM_007621	ENSMUSG00000025150	Cbr2	MLCR	carbonyl reductase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59740777-2	chr15	59740677	59740877	+	663.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54182.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41324409-2	chr19	41324309	41324509	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 7 of 16)	intron (NM_031376, intron 7 of 16)	-60405.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44479054-8	chr9	44478845	44479045	+	788.697937	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3880.0	NM_001357490	80288.0	Mm.370270	NM_030256	ENSMUSG00000063382	Bcl9l	B9L|BC003321|BCL9-2|DLNB11	B cell CLL/lymphoma 9-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-32252216-1	chr4	32252116	32252316	+	700.0	f1_c57bl6.idr	Intergenic	Intergenic	-165219.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	-0.539072095141396	-1.17607782048307	-1.18720726126045	-1.19634931528472	-1.20196491063698	-1.17366602423904	-1.18468779981884	-1.19471289198531	-2.68787187143179	0.435473844436726	1
Merged-chr4-155067596-2	chr4	155067496	155067696	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001042407, intron 1 of 5)	intron (NM_001042407, intron 1 of 5)	566.0	NM_001042407	668173.0	Mm.133114	NM_001042407	ENSMUSG00000029047	Pex10	AV128229|Gm142	peroxisomal biogenesis factor 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-40134908-4	chr4	40134785	40134985	+	802.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8380.0	NM_007386	11428.0	Mm.331547	NM_007386	ENSMUSG00000028405	Aco1	Aco-1|Irebp|Irp1	aconitase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-97112645-2	chr7	97112545	97112745	+	956.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162477, intron 1 of 9)	intron (NM_001162477, intron 1 of 9)	30894.0	NM_010248	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-23738845-1	chr17	23738745	23738945	+	614.0	f1_balb.idr	intron (NM_023824, intron 1 of 2)	intron (NM_023824, intron 1 of 2)	1485.0	NM_023824	76498.0	Mm.491253	NM_023824	ENSMUSG00000023909	Paqr4	1500004C10Rik	progestin and adipoQ receptor family member IV	protein-coding	0.817499774796341	2.02876321261603	1.53544319395985	1.10580301464127	0.823020770957572	1.91986741556763	2.69665176722462	1.11182740961577	1.07899645414875	0.396347906853492	0.883276804275027
Merged-chr17-10335201-5	chr17	10335083	10335283	+	971.338074	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10581.0	NR_045461	76634.0	Mm.491052	NR_045461	ENSMUSG00000099384	1700110C19Rik	-	RIKEN cDNA 1700110C19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-88828421-3	chr15	88828322	88828522	+	841.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8776.0	NM_029720	76737.0	Mm.292567	NM_029720	ENSMUSG00000023272	Creld2	5730592L21Rik|C85758	cysteine-rich with EGF-like domains 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-13653195-2	chr9	13653095	13653295	+	752.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013813, intron 1 of 3)	intron (NM_001013813, intron 1 of 3)	-9265.0	NM_173776	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127515657-2	chr10	127515536	127515736	+	639.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001098789, intron 2 of 3)	intron (NM_001098789, intron 2 of 3)	697.0	NM_001098789	407790.0	Mm.336856	NM_001098789	ENSMUSG00000040280	Ndufa4l2	BC064011	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-83093795-1	chr8	83093695	83093895	+	696.0	f1_balb.idr	Intergenic	(TTGG)n|Simple_repeat|Simple_repeat	-71557.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	1.19844112283736	1.3125571925437	1.98771968467926	1.82318009860546	1.20590587979866	1.32057988209049	2.00443515149569	2.20108239358773	0.408594535528423	0.717434802202446	0.998431161219273
Merged-chr5-145137266-2	chr5	145137166	145137366	+	609.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033313, intron 1 of 5)	intron (NM_001033313, intron 1 of 5)	2823.0	NM_001033313	231887.0	Mm.188851	NM_001033313	ENSMUSG00000029623	Pdap1	HASPP28|PAP|PAP1	PDGFA associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-9330853-3	chr13	9330743	9330943	+	957.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081426, intron 1 of 36)	intron (NM_001081426, intron 1 of 36)	54318.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-84800518-4	chr2	84800427	84800627	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019949, intron 1 of 3)	intron (NM_019949, intron 1 of 3)	1699.0	NM_019949	56791.0	Mm.38261	NM_019949	ENSMUSG00000027078	Ube2l6	2810489I21Rik|RIG-B|UBCH8|Ubce8|Ubcm8	ubiquitin-conjugating enzyme E2L 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-87218144-2	chr1	87218044	87218244	+	653.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039169, intron 1 of 6)	intron (NM_001039169, intron 1 of 6)	4205.0	NM_001039169	26987.0	Mm.227183	NM_023314	ENSMUSG00000026254	Eif4e2	2700069E09Rik|AI036339|AV129531|D0H0S6743E|Eif4el3	eukaryotic translation initiation factor 4E member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5275185-2	chr17	5275085	5275285	+	679.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 6 of 19)	intron (NM_001085355, intron 6 of 19)	143582.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-68905862-3	chr18	68905752	68905952	+	998.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038051, intron 3 of 6)	intron (NR_038051, intron 3 of 6)	45676.0	NR_038051	78931.0	Mm.160155	NR_038051		4930546C10Rik	-	RIKEN cDNA 4930546C10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-65783786-4	chr17	65783679	65783879	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152099, intron 2 of 20)	CpG-6545	424.0	NR_104465	70351.0	Mm.48686	NM_146081	ENSMUSG00000061950	Ppp4r1	3110001J10Rik|Pp4r1	protein phosphatase 4, regulatory subunit 1	protein-coding	0.942042183864908	0.830291310364805	1.40024193124629	1.11891035457516	1.7193510186093	1.34056147928807	1.29357127403716	0.815020077435458	1.1366049741127	0.415472926391661	0.896676881011847
Merged-chr9-66976044-2	chr9	66975944	66976144	+	558.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030717)	promoter-TSS (NM_030717)	-560.0	NM_030717	80907.0	Mm.157882	NM_030717	ENSMUSG00000032370	Lactb	LACT-1|Lact1|Mrpl56	lactamase, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-155163881-2	chr4	155163781	155163981	+	577.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011385, intron 1 of 6)	intron (NM_011385, intron 1 of 6)	58654.0	NM_011385	20481.0	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-137764277-3	chr4	137764166	137764366	+	801.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007431, intron 1 of 11)	intron (NM_007431, intron 1 of 11)	2209.0	NM_001287172	11647.0	Mm.288186	NM_007431	ENSMUSG00000028766	Alpl	ALP|APTNAP|Akp-2|Akp2|TNAP|TNSALP	alkaline phosphatase, liver/bone/kidney	protein-coding	2.53536218379479	2.38262370439508	1.71708584352921	2.93414500604218	2.02109744045416	1.29146348266058	2.19732578316214	1.47695362075792	-1.60238075298927	0.0985871573581827	0.488292384839112
Merged-chr3-144704147-4	chr3	144704041	144704241	+	977.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001282037, intron 5 of 10)	intron (NM_001282037, intron 5 of 10)	16194.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3236859-4	chr12	3236751	3236951	+	975.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015551, intron 1 of 6)	intron (NR_015551, intron 1 of 6)	1060.0	NR_015551	74173.0	Mm.309774	NM_028796	ENSMUSG00000079179	Rab10os	1700012B15Rik|1810036A22Rik	RAB10, member RAS oncogene family, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166781124-2	chr2	166781024	166781224	+	884.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12643.0	NM_023815	76367.0	Mm.330796	NM_023815	ENSMUSG00000042854	Trp53rkb	2810408M09Rik|4933401B08Rik|5630401H01Rik|Nori-2|PRPK|Tp53rk|Trp53rk|Trp53tk|mNori-2p	transformation related protein 53 regulating kinase B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36134749-4	chr1	36134640	36134840	+	948.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	9573.0	NR_105862	102465540.0		NR_105862	ENSMUSG00000098752	Mir6897	Gm27652|mmu-mir-6897	microRNA 6897	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167269977-3	chr2	167269897	167270097	+	602.466675	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-29460.0	NM_008968	19223.0	Mm.2339	NM_008968	ENSMUSG00000017969	Ptgis	Cyp8|Cyp8a1|Pgis	prostaglandin I2 (prostacyclin) synthase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47249073-2	chr17	47248973	47249173	+	996.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001097623, intron 4 of 19)	intron (NM_001097623, intron 4 of 19)	18843.0	NM_172622	224829.0	Mm.260989	NM_172622		Trerf1	9430096I18Rik|AI429294|B830015H24|RAPA|Trep-132|Trep132	transcriptional regulating factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69415141-4	chr11	69415129	69415329	+	924.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1554.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-87288189-2	chr18	87288089	87288289	+	580.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	575878.0	NM_001361145	12405.0	Mm.70775	NM_172633	ENSMUSG00000024647	Cbln2	6330593N19Rik|A730004O05	cerebellin 2 precursor protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69407474-2	chr11	69407413	69407613	+	917.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001017426, exon 6 of 23)	exon (NM_001017426, exon 6 of 23)	6162.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-68082772-2	chr7	68082672	68082872	+	632.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010513, intron 2 of 20)	intron (NM_010513, intron 2 of 20)	130515.0	NM_010513	16001.0	Mm.275742	NM_010513	ENSMUSG00000005533	Igf1r	A330103N21Rik|CD221|D930020L01|IGF-1R|hyft	insulin-like growth factor I receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16314083-4	chr7	16313996	16314196	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133234, intron 3 of 3)	intron (NM_133234, intron 3 of 3)	4513.0	NM_133234	170770.0	Mm.7660	NM_133234	ENSMUSG00000002083	Bbc3	PUMA|PUMA/JFY1	BCL2 binding component 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5594351-2	chr17	5594251	5594451	+	648.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	101751.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-16781114-2	chr5	16781014	16781214	+	622.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	227213.0	NM_001289461	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-95354301-4	chr11	95354212	95354412	+	935.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172543, intron 1 of 7)	intron (NM_172543, intron 1 of 7)	17294.0	NM_172543	215512.0	Mm.262113	NM_172543	ENSMUSG00000038893	Fam117a	5730593F17Rik|AW548096	family with sequence similarity 117, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-50687525-4	chr2	50687435	50687635	+	997.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-222149.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-27327913-1	chr14	27327813	27328013	+	798.0	f1_c57bl6.idr	intron (NM_027871, intron 2 of 10)	intron (NM_027871, intron 2 of 10)	-8124.0	NM_001289687	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	-0.948023810556697	-0.931328820230236	-0.941483360464557	-0.943939722492461	-0.792167248103246	-0.928545634159077	-0.227406778159396	-0.943510391816416	3.1012295273374	0.301013727230549	1
Merged-chr16-93603970-4	chr16	93603840	93604040	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145482)	promoter-TSS (NM_145482)	-125.0	NM_145482	224440.0	Mm.10628	NM_145482	ENSMUSG00000022948	Setd4	AY037804|C21orf18|ORF21	SET domain containing 4	protein-coding	6.51195606380053	5.63049391320357	6.56292800138275	5.74633512030752	6.08435573255036	5.50409108794377	6.57329376125249	5.67784806771229	-0.172288524269119	0.558908902261971	0.960321604678676
Merged-chr9-105495155-4	chr9	105495039	105495239	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175025)	promoter-TSS (NM_175025)	-6.0	NM_001253836	235574.0	Mm.326247	NM_175025	ENSMUSG00000032570	Atp2c1	1700121J11Rik|ATP2C1A|AW061228|BCPM|D930003G21Rik|HHD|SPCA|pmr1	ATPase, Ca++-sequestering	protein-coding	6.12152334108191	6.18245603645229	6.34250126290772	6.327929233479	6.1171551098072	5.40085833987916	6.36425325021861	5.72851074273184	-0.317630155195838	0.196357174895861	0.677629928399006
Merged-chr19-21033505-2	chr19	21033398	21033598	+	875.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-71212.0	NR_126458	75354.0	Mm.243873	NR_126458		4930554I06Rik	-	RIKEN cDNA 4930554I06 gene	ncRNA	2.2831624527348	2.29580181288559	2.22346885356759	2.67575482817998	2.39656991720324	2.15909205116842	2.58806814039468	2.29977134539797	-0.0300801208178564	0.969861248157501	0.998431161219273
Merged-chr5-150496053-2	chr5	150495953	150496153	+	737.099976	f1_balb.idr|f1_c57bl6.idr	intron (NM_172887, intron 60 of 60)	B3|SINE|B2	6166.0	NR_024513	194292.0	Mm.300184	NR_024513		Gm5	Gm1812	predicted gene 5	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-89491303-2	chr13	89491203	89491403	+	627.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49333.0	NM_013500	12950.0	Mm.266790	NM_013500	ENSMUSG00000021613	Hapln1	BB099155|CLP|Crtl1|Crtl1l|LP|LP-1	hyaluronan and proteoglycan link protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-46312186-8	chr11	46312016	46312216	+	936.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001252460, exon 1 of 31)	5' UTR (NM_001252460, exon 1 of 31)	242.0	NM_001252460	76884.0	Mm.154358	NM_133769	ENSMUSG00000020340	Cyfip2	1500004I01Rik|6430511D02Rik|AA930218|AU022376|Pir121|mKIAA1168	cytoplasmic FMR1 interacting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-154559018-2	chr2	154558918	154559118	+	611.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021546)	promoter-TSS (NM_021546)	-165.0	NM_021546	56846.0	Mm.143748	NM_021546	ENSMUSG00000027489	Necab3	2900010M17Rik|AI853434|Apba2bp|Nip1|XB51	N-terminal EF-hand calcium binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75176008-2	chr11	75175908	75176108	+	714.666626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_027136)	TTS (NM_027136)	2326.0	NR_029546	387150.0		NR_029546	ENSMUSG00000065537	Mir132	Mirn132|mir-132|mmu-mir-132	microRNA 132	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-108190620-2	chr9	108190520	108190720	+	632.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007567)	promoter-TSS (NM_007567)	-237.0	NM_007567	12217.0	Mm.20425	NM_007567	ENSMUSG00000032589	Bsn	-	bassoon	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-31213414-2	chr9	31213314	31213514	+	610.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A|LTR|ERVL-MaLR	-1566.0	NM_001102456	11804.0	Mm.19133	NM_009691	ENSMUSG00000031996	Aplp2	AI790698|APLP-2|CDEBP	amyloid beta (A4) precursor-like protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-110706988-4	chr12	110706890	110707090	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10595.0	NM_010480	15519.0	Mm.1843	NM_010480	ENSMUSG00000021270	Hsp90aa1	86kDa|89kDa|AL024080|AL024147|Hsp86-1|Hsp89|Hsp90|Hspca|hsp4	heat shock protein 90, alpha (cytosolic), class A member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-52599868-3	chr18	52599764	52599964	+	645.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16051.0	NM_025749	66758.0	Mm.251599	NM_025749	ENSMUSG00000046886	Zfp474	4933409D10Rik|Znf474	zinc finger protein 474	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-32932766-4	chr19	32932666	32932866	+	783.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	175189.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-111999287-2	chr10	111999187	111999387	+	680.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur2|LINE|L1	-2023.0	NM_028608	73690.0	Mm.173790	NM_028608	ENSMUSG00000056888	Glipr1	2410114O14Rik|RTVP-1|RTVP1|mRTVP-1	GLI pathogenesis-related 1 (glioma)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-74643481-3	chr14	74643372	74643572	+	861.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172812, intron 1 of 2)	intron (NM_172812, intron 1 of 2)	2598.0	NM_172812	15558.0	Mm.214351	NM_172812	ENSMUSG00000034997	Htr2a	5-HT-2|5-HT-2A|E030013E04|Htr-2|Htr2	5-hydroxytryptamine (serotonin) receptor 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-48446128-3	chr6	48446047	48446247	+	928.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001085417)	promoter-TSS (NM_001085417)	-322.0	NM_001355746	68910.0	Mm.2464	NM_020589	ENSMUSG00000068551	Zfp467	1190001I08Rik|AB041616|AI426952|AV017623|EZI|MNCb-3350|Znf467	zinc finger protein 467	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6266823-2	chr19	6266723	6266923	+	584.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	AT_rich|Low_complexity|Low_complexity	1979.0	NR_029720	387187.0		NR_029720	ENSMUSG00000065523	Mir192	Mirn192|mir-192|mmu-mir-192	microRNA 192	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10470546-2	chr19	10470446	10470646	+	609.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12351.0	NM_133689	67752.0	Mm.25939	NM_133689	ENSMUSG00000035179	Ppp1r32	4930579J09Rik|AU015816|IIIG9|IIIG9L|IIIG9S	protein phosphatase 1, regulatory subunit 32	protein-coding	-2.05752322593321	-2.15521190974092	-2.16307242109104	-2.16952927915413	-2.17938029103484	-2.15350850414045	-2.16129297361887	-2.16837350464794	-0.683654500252594	0.846597994014493	1
Merged-chr15-97135484-2	chr15	97135384	97135584	+	711.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31760.0	NR_155278	102635594.0	Mm.392594	NR_155278	ENSMUSG00000116295	Gm32885	-	predicted gene, 32885	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-47397361-2	chr10	47397253	47397453	+	682.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_A|LINE|L1	1152604.0	NR_028276	108637.0		NR_028276	ENSMUSG00000096263	Snord14c	Gm23107|Rnu14|U14	small nucleolar RNA, C/D box 14C	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-11165407-2	chr19	11165307	11165507	+	747.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027074)	promoter-TSS (NM_027074)	-87.0	NM_027074	69416.0	Mm.72491	NM_027074	ENSMUSG00000024728	1700025F22Rik	-	RIKEN cDNA 1700025F22 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-40142389-1	chr4	40142289	40142489	+	754.0	f0_balb.idr	promoter-TSS (NM_007386)	promoter-TSS (NM_007386)	-876.0	NM_007386	11428.0	Mm.331547	NM_007386	ENSMUSG00000028405	Aco1	Aco-1|Irebp|Irp1	aconitase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-107391689-2	chr11	107391589	107391789	+	616.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 1 of 9)	B2_Mm1a|SINE|B2	79031.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-88741573-2	chr4	88741473	88741673	+	625.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13295.0	NM_001085528	435791.0	Mm.473673	NM_001085528	ENSMUSG00000094618	Gm13271	Ifnz	predicted gene 13271	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-25487568-2	chr9	25487468	25487668	+	594.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 2 of 7)	intron (NM_026189, intron 2 of 7)	5971.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26616935-3	chr17	26616817	26617017	+	907.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026170, intron 3 of 9)	intron (NM_026170, intron 3 of 9)	55405.0	NM_026170	67458.0	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-146099969-3	chr2	146099895	146100095	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-122002.0	NM_016889	53626.0	Mm.379070	NM_016889	ENSMUSG00000068154	Insm1	IA-1	insulinoma-associated 1	protein-coding	4.01111863197226	4.80385843069049	1.97544955955561	3.19340661765719	3.99601808341181	4.79755184375088	1.99615154625358	3.57401439756295	0.0773223534518269	0.945405419774145	0.998431161219273
Merged-chr7-45102321-2	chr7	45102221	45102421	+	683.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010189, intron 3 of 6)	intron (NM_010189, intron 3 of 6)	1501.0	NM_001357117	14132.0	Mm.3303	NM_010189	ENSMUSG00000003420	Fcgrt	FcRn	Fc receptor, IgG, alpha chain transporter	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-60749132-2	chr13	60749032	60749232	+	619.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 20 of 26)	intron (NM_134062, intron 20 of 26)	37232.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	0.688967400669916	1.02353495850708	0.349210744638748	0.344862673338511	0.338764270770085	1.03424996340267	0.516981292707851	0.345620337707929	-0.231982997867908	0.902809615147527	1
Merged-chr13-81171483-4	chr13	81171379	81171579	+	927.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 86 of 89)	intron (NM_054053, intron 86 of 89)	207405.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126850795-2	chr8	126850695	126850895	+	849.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_151740, exon 2 of 2)	non-coding (NR_151740, exon 2 of 2)	1775.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-142396293-2	chr7	142396193	142396393	+	938.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8423.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	-0.182534527491087	-1.00895016391444	-1.0218572941639	-1.02617529563146	-1.02981053641889	-1.006153134946	-1.01893540279166	-1.02572713344884	-3.09936526392938	0.343406696059999	1
Merged-chr16-91828510-2	chr16	91828410	91828610	+	830.25	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001110276, exon 16 of 16)	3' UTR (NM_001110276, exon 16 of 16)	99139.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-82073561-4	chr13	82073471	82073671	+	995.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	290324.0	NM_007684	12626.0	Mm.12481	NM_007684	ENSMUSG00000021537	Cetn3	MmCEN3	centrin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-29855484-6	chr13	29855363	29855563	+	857.511108	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001308486, intron 1 of 5)	CpG	210.0	NR_131896	68916.0	Mm.212227	NM_144536	ENSMUSG00000006191	Cdkal1	1190005B03Rik|6620401C13Rik	CDK5 regulatory subunit associated protein 1-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-22771554-4	chr2	22771450	22771650	+	787.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2777.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166195215-4	chr2	166195104	166195304	+	955.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39521.0	NM_028072	72043.0	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-29388469-4	chr5	29388477	29388677	+	848.00415	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10187.0	NM_020295	56873.0	Mm.41572	NM_020295	ENSMUSG00000010721	Lmbr1	1110048D14Rik|AU017641	limb region 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-43531548-4	chr13	43531337	43531537	+	999.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28754.0	NM_001081059	76137.0	Mm.426290	NM_001081059	ENSMUSG00000021371	Mcur1	6230416A05Rik|AU015498|AV136929|AW554392|C88263|Ccdc90a	mitochondrial calcium uniporter regulator 1	protein-coding	0.132901301297027	1.04784792814596	0.347140832343369	0.930871800368876	0.299994745751473	0.158445360661601	0.150699644423515	0.144033308416982	-3.49292258782464	0.0775746470131862	1
Merged-chr11-118480880-4	chr11	118480752	118480952	+	746.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153103, intron 3 of 13)	MTA_Mm|LTR|ERVL-MaLR	4020.0	NM_001359368	217364.0	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-5142961-2	chr12	5142861	5143061	+	680.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164493, intron 3 of 13)	intron (NM_001164493, intron 3 of 13)	225608.0	NM_001362349	320817.0	Mm.210966	NM_001099628	ENSMUSG00000052812	Atad2b	1110014E10Rik|BC032887|C79189|D530031C13Rik	ATPase family, AAA domain containing 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-70453080-4	chr12	70452969	70453169	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028339)	promoter-TSS (NM_028339)	-85.0	NM_028339	72736.0	Mm.204670	NM_028339	ENSMUSG00000021072	Tmx1	2810425A04Rik|AI465319|Txndc1	thioredoxin-related transmembrane protein 1	protein-coding	4.83742382215919	4.42571273187913	5.78057828105778	4.22136742269678	4.25315752796186	5.09557049334363	4.69036771785638	4.05391768846695	-0.472938645355996	0.275941587054573	0.779855644193021
Merged-chr2-102876345-4	chr2	102876253	102876453	+	871.2333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039150, intron 1 of 13)	MIRc|SINE|MIR	25312.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	1.92661074515293	2.2817571032411	1.8208330228687	2.62861388162525	1.69874102918768	1.25524149101325	2.10669655756862	1.78026260017906	-1.2378270618661	0.211118512158554	0.700323931057359
Merged-chr9-118696379-3	chr9	118696352	118696552	+	749.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 14 of 27)	intron (NM_133721, intron 14 of 27)	-15240.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-30076357-1	chr6	30076257	30076457	+	1000.0	f0_balb.idr	promoter-TSS (NM_001164229)	promoter-TSS (NM_001164229)	36.0	NM_001164229	18181.0	Mm.259258	NM_010938	ENSMUSG00000058440	Nrf1	C87038|D6Ertd415e	nuclear respiratory factor 1	protein-coding	0.0266018664645066	0.0541152151362945	0.0452607633099723	0.0383258798825432	0.498556835159069	1.30547232674369	0.45129872083865	0.0395440952108302	4.41942366277473	0.0278909105723865	1
Merged-chr17-35198884-2	chr17	35198784	35198984	+	601.333313	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001278601)	TTS (NM_001278601)	3123.0	NM_013693	21926.0	Mm.1293	NM_013693	ENSMUSG00000024401	Tnf	DIF|TNF-a|TNF-alpha|TNFSF2|TNFalpha|Tnfa|Tnfsf1a|Tnlg1f	tumor necrosis factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-3359092-2	chr13	3358992	3359192	+	651.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-119211.0	NR_015522	76937.0	Mm.487240	NR_015522	ENSMUSG00000097709	2810429I04Rik	AI256682	RIKEN cDNA 2810429I04 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-65187669-2	chr1	65187569	65187769	+	596.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310624, intron 1 of 41)	intron (NM_001310624, intron 1 of 41)	984.0	NM_011086	18711.0	Mm.38370	NM_011086	ENSMUSG00000025949	Pikfyve	5230400C17Rik|Pip5k|Pip5k3|Pipk5k3|PipkIII|p235	phosphoinositide kinase, FYVE type zinc finger containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-5536990-4	chr18	5536891	5537091	+	741.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033552, intron 4 of 6)	intron (NR_033552, intron 4 of 6)	-54869.0	NM_011546	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-34906987-4	chr2	34906887	34907087	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028716, intron 4 of 14)	intron (NM_028716, intron 4 of 14)	6989.0	NM_028716	74016.0	Mm.65691	NM_028716	ENSMUSG00000026873	Phf19	3110009G19Rik|3321402G02Rik	PHD finger protein 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35389897-1	chr17	35389797	35389997	+	689.0	f1_balb.idr	Intergenic	Intergenic	-4202.0	NR_051981	15016.0	Mm.439648	NR_051981	ENSMUSG00000055413	H2-Q5	H-2Q5|Qa-5|Qa5|Qat-5	histocompatibility 2, Q region locus 5	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-6955929-4	chr6	6955826	6956026	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001077713)	promoter-TSS (NM_001077713)	-92.0	NM_001077713	71238.0	Mm.389086	NM_001077713	ENSMUSG00000042505	Sdhaf3	0610005M07Rik|4933430A16Rik|Acn9	succinate dehydrogenase complex assembly factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127330432-1	chr7	127330332	127330532	+	1000.0	f1_balb.idr	intron (NM_001253873, intron 30 of 30)	intron (NM_001253873, intron 30 of 30)	14882.0	NM_146202	233890.0	Mm.23031	NM_146202	ENSMUSG00000047371	Zfp768	BC026432|Znf768	zinc finger protein 768	protein-coding	2.40548362000872	3.08292356655241	1.62962336418549	1.11485649441793	2.42712082278392	1.70263535653009	1.14898315594908	2.05706272799431	-0.815850265442198	0.456664314036581	0.919264728457769
Merged-chr4-16162668-2	chr4	16162568	16162768	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_138102, intron 1 of 11)	intron (NR_138102, intron 1 of 11)	975.0	NM_138952	192656.0	Mm.112765	NM_138952	ENSMUSG00000041135	Ripk2	2210420D18Rik|CARD3|CARDIAK|CCK|D4Bwg0615e|RICK|RIP2	receptor (TNFRSF)-interacting serine-threonine kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115555378-2	chr5	115555334	115555534	+	806.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_133915, exon 12 of 12)	3' UTR (NM_133915, exon 12 of 12)	-4033.0	NM_007475	11837.0	Mm.5286	NM_007475	ENSMUSG00000067274	Rplp0	36B4|Arbp|L10E	ribosomal protein, large, P0	protein-coding	0.0624634786896255	0.416852196126819	0.0729610026620914	0.475461635161519	0.0634351631316908	0.424133943287866	0.0740931957361141	0.585338083497731	0.279028594904416	0.893652622371449	1
Merged-chr9-118622113-2	chr9	118622013	118622213	+	755.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 1 of 27)	intron (NM_133721, intron 1 of 27)	15404.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-77614165-1	chr15	77614065	77614265	+	717.333313	f1_balb.idr	Intergenic	RLTR14-int|LTR|ERV1	-18040.0	NM_177820	328561.0	Mm.379486	NM_177820	ENSMUSG00000050014	Apol10b	9130218O11Rik	apolipoprotein L 10B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83584273-3	chr6	83584161	83584361	+	853.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_078345, intron 7 of 7)	intron (NR_078345, intron 7 of 7)	-11757.0	NM_001362080	70527.0	Mm.32801	NM_024239	ENSMUSG00000006906	Stambp	5330424L14Rik|5730422L11Rik|AW107289|Amsh|mKIAA4198	STAM binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45309677-3	chr7	45309574	45309774	+	712.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175130, intron 17 of 24)	intron (NM_175130, intron 17 of 24)	-15284.0	NR_110499	100040970.0	Mm.289810	NR_110499	ENSMUSG00000046721	Rpl14-ps1	Gm9811	ribosomal protein L14, pseudogene 1	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-37344050-2	chr13	37343950	37344150	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-1295.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-173743751-2	chr2	173743651	173743851	+	938.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019806, intron 1 of 5)	B3|SINE|B2	6180.0	NM_019806	56491.0	Mm.260456	NM_019806	ENSMUSG00000054455	Vapb	AI225786|AI840687|AI848259|D2Abb2e|R75548|VAP33b|Vamp33b	vesicle-associated membrane protein, associated protein B and C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-138522037-5	chr3	138521857	138522057	+	915.283325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4234.0	NM_007917	13684.0	Mm.3941	NM_007917	ENSMUSG00000028156	Eif4e	EG668879|Eif4e-ps|If4e|eIF-4E	eukaryotic translation initiation factor 4E	protein-coding	2.65220859645573	3.0564863241504	1.92114019326963	2.01689414020574	2.60501725140188	1.29937077996243	2.23511161935319	1.2333027297062	-1.10957130275141	0.27217069795961	0.77560265100435
Merged-chr9-20744096-2	chr9	20743996	20744196	+	664.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357639, intron 1 of 5)	intron (NM_001357639, intron 1 of 5)	2200.0	NM_001357639	244723.0	Mm.293552	NM_173777	ENSMUSG00000032172	Olfm2	A030009A06Rik	olfactomedin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-86900014-1	chr8	86899914	86900114	+	611.5	f0_balb.idr	Intergenic	MT2B1|LTR|ERVL	-14756.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	1.58582609599406	1.40578036935344	1.36846521722017	2.11448514371703	1.83099322331964	1.4140461302243	2.28601826189106	2.12575988280704	0.867506968794213	0.408080726144335	0.892068266828325
Merged-chr1-152537511-2	chr1	152537411	152537611	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 11 of 17)	intron (NM_016846, intron 11 of 17)	87706.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-6978799-4	chr17	6978711	6978911	+	961.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026611).2	promoter-TSS (NM_026611).2	-49.0	NM_026611	68195.0	Mm.181237	NM_026611	ENSMUSG00000094724	Rnaset2b	0610007O07Rik|4833423A10Rik|4930532K22Rik|C79750|RNASE6PL|Rnaset2	ribonuclease T2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-31890188-1	chr11	31890088	31890288	+	628.0	f1_balb.idr	intron (NM_001290678, intron 2 of 7)	intron (NM_001290678, intron 2 of 7)	19248.0	NM_026252	67579.0	Mm.339792	NM_026252	ENSMUSG00000020300	Cpeb4	Cpe-bp4|Cpeb-4|mCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding	0.629176907971038	0.500778147679241	0.682792595655981	0.81281635284767	1.25425334665836	0.502826436239927	0.688447749417064	1.34477156474402	1.85176685619394	0.2455291516645	1
Merged-chr8-13646896-4	chr8	13646780	13646980	+	956.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 1 of 23)	intron (NM_009025, intron 1 of 23)	30707.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	2.92119858481377	2.91498643152355	2.4374150463187	1.9754622892392	1.73440652183576	2.11520459310615	1.86868665006979	2.48636587649698	-1.21525491458495	0.153386264613849	0.608171977143741
Merged-chr7-127200180-2	chr7	127200080	127200280	+	598.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144522, intron 5 of 8)	intron (NM_144522, intron 5 of 8)	-4103.0	NM_027353	70233.0	Mm.28050	NM_027353	ENSMUSG00000042502	Cd2bp2	1500011B02Rik|2410024K20Rik|AW048183	CD2 antigen (cytoplasmic tail) binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-74898029-4	chr11	74897930	74898130	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177325)	promoter-TSS (NM_177325)	-50.0	NM_177325	104662.0	Mm.220843	NM_177325	ENSMUSG00000038335	Tsr1	AU040765|AW550801|mKIAA1401	TSR1 20S rRNA accumulation	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25305898-2	chr7	25305798	25305998	+	848.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183311)	promoter-TSS (NM_183311)	-210.0	NM_183311	330485.0	Mm.260740	NM_183311	ENSMUSG00000043843	Tmem145	B930076A02Rik	transmembrane protein 145	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-98263114-4	chr13	98263039	98263239	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178918)	promoter-TSS (NM_178918)	63.0	NM_001271388	68558.0	Mm.209642	NM_023472	ENSMUSG00000021661	Ankra2	1110004M18Rik|Ankra	ankyrin repeat, family A (RFXANK-like), 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-46536594-1	chr4	46536494	46536694	+	893.0	f1_balb.idr	promoter-TSS (NM_029077)	promoter-TSS (NM_029077)	-453.0	NM_029077	74735.0	Mm.240252	NM_029077	ENSMUSG00000039853	Trim14	5830400N10Rik|pub	tripartite motif-containing 14	protein-coding	0.685241817702667	0.7349739096254	1.4337507718849	0.706541319754122	1.42090054082936	1.94523786829169	1.77893256091565	0.708745164046993	2.37292046868106	0.119837180171041	0.542861496380273
Merged-chr7-141411090-2	chr7	141410990	141411190	+	751.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_172116, exon 3 of 8)	exon (NM_172116, exon 3 of 8)	3035.0	NM_172116	213350.0	Mm.290953	NM_172116	ENSMUSG00000051007	Gatd1	BC023835|D230016J19Rik|Pddc1	glutamine amidotransferase like class 1 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-99107577-2	chr10	99107477	99107677	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015737)	promoter-TSS (NM_015737)	495.0	NR_153333	382406.0	Mm.440656	NM_027740	ENSMUSG00000019952	Poc1b	4933430F16Rik|Wdr51b	POC1 centriolar protein B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150012731-4	chr4	150012642	150012842	+	997.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1E2|LTR|ERVL-MaLR	-3719.0	NM_173371	100198.0	Mm.22183	NM_173371	ENSMUSG00000028980	H6pd	AI785303|G6pd1|Gpd-1|Gpd1	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	protein-coding	2.66322202828819	2.48727246045104	2.78305697998706	2.00296619027436	3.36210219722178	3.19497100821424	2.56428490897193	2.91297080841767	1.01534222336371	0.152653927860898	0.606640445713354
Merged-chr3-81102342-4	chr3	81102224	81102424	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019971, intron 1 of 5)	intron (NM_019971, intron 1 of 5)	65908.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	6.55044452172974	6.24347797081201	6.41335099357037	6.34855174153907	5.29054163250681	4.38229629147091	5.23874396160312	5.05627525794597	-1.50299615339482	8.2545187255698e-09	1.03164287155611e-06
Merged-chr10-12956735-2	chr10	12956635	12956835	+	836.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_029075, intron 1 of 2)	intron (NM_029075, intron 1 of 2)	7524.0	NM_029075	74732.0	Mm.248648	NM_029075	ENSMUSG00000039232	Stx11	5830405C08Rik	syntaxin 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-102579782-2	chr11	102579682	102579882	+	575.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040286)	promoter-TSS (NR_040286)	-663.0	NR_040286	100040792.0	Mm.277966	NR_040286	ENSMUSG00000078640	Gm11627	-	predicted gene 11627	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-58655505-4	chr3	58655387	58655587	+	913.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3445.0	NR_004433	666680.0	Mm.422212	NR_004433		Gm8234	AU022133	spermine synthase pseudogene	pseudo	1.35154975431999	1.3638320674414	2.09871856788898	0.820179689654273	1.01910378674342	1.37546543165621	2.63402061939305	0.823569399068649	0.563925119679747	0.661491885624123	0.99099887335198
Merged-chr14-30827580-4	chr14	30827456	30827656	+	763.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028839, intron 1 of 7)	intron (NM_028839, intron 1 of 7)	1962.0	NM_028839	69179.0	Mm.143025	NM_028839	ENSMUSG00000006526	Tmem110	1810038N08Rik|2310014H19Rik|AW554125|STIMATE	transmembrane protein 110	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135951940-3	chr5	135951796	135951996	+	861.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17255.0	NM_018871	22628.0	Mm.233813	NM_018871	ENSMUSG00000051391	Ywhag	14-3-3gamma|D7Bwg1348e	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-52726922-4	chr1	52726836	52727036	+	991.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357464, intron 1 of 7)	CpG	382.0	NM_178081	98682.0	Mm.491173	NM_133829	ENSMUSG00000041439	Mfsd6	2210010L05Rik|9630025I22Rik|AI836200|AW212394|MMR2	major facilitator superfamily domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-146498808-4	chr3	146498630	146498830	+	806.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316756, intron 1 of 14)	B3A|SINE|B2	1023.0	NM_001316756	70951.0	Mm.383235	NM_027617	ENSMUSG00000028188	Spata1	4921536I21Rik|AV266943|SP-2	spermatogenesis associated 1	protein-coding	0.906040651850273	0.548766495928237	0.720126107134861	1.2610505841674	1.01530128791824	0.749630283028621	0.542340774502502	0.972233510407049	-0.299873283291616	0.847413008217182	1
Merged-chr2-169929845-5	chr2	169929742	169929942	+	850.3133539999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33345.0	NR_131974	446211.0	Mm.266854	NR_131974	ENSMUSG00000103935	AY702102	STDP1	cDNA sequence AY702102	ncRNA	2.43922509100084	3.19567534130099	3.25198656509105	1.43993257172642	3.09246251205433	2.4871903612583	3.87533103438725	2.14974914087727	0.546000026992927	0.508862660736686	0.943929221323246
Merged-chr9-118706827-2	chr9	118706730	118706930	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 15 of 27)	intron (NM_133721, intron 15 of 27)	-4862.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	2.2342098072035	1.16107813305708	2.59157037588337	2.44139019243207	1.6295038995328	1.16693154513787	1.7684931592746	1.7129532455343	-1.69629089931899	0.116668056568763	0.534949048170199
Merged-chr5-45496719-2	chr5	45496619	45496819	+	554.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_024434, intron 2 of 12)	intron (NM_024434, intron 2 of 12)	3345.0	NM_024434	66988.0	Mm.286830	NM_024434	ENSMUSG00000039682	Lap3	2410015L10Rik|AA410100|LAP-3|Lap|Lapep|Pep-7|Pep-S|Pep7|Peps	leucine aminopeptidase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-123986296-4	chr9	123986213	123986413	+	996.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7905.0	NM_007718	12770.0	Mm.423532	NM_007718	ENSMUSG00000064039	Ccr1l1	Cmkbr1l1	chemokine (C-C motif) receptor 1-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-47305777-2	chr4	47305677	47305877	+	555.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009928, intron 34 of 39)	B4A|SINE|B4	-47445.0	NM_001312868	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-41690120-2	chr10	41690020	41690220	+	644.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001358562, exon 4 of 48)	exon (NM_001358562, exon 4 of 48)	26343.0	NM_001358562	75973.0	Mm.228517	NM_029493	ENSMUSG00000075225	Ccdc162	5033413D22Rik|Ccdc162p|Gm29096|Gm61|Gm6976	coiled-coil domain containing 162	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-148498019-3	chr2	148497914	148498114	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54479.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	0.996355573070808	1.73523038974332	0.708809641094654	1.41834935465814	1.00474454891122	0.949618684451207	0.711590558412431	1.31867302794291	-1.09424964306935	0.440220523694165	0.909387391506812
Merged-chr5-24781707-2	chr5	24781607	24781807	+	804.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23864.0	NM_153076	214301.0	Mm.63484	NM_153076	ENSMUSG00000038135	Crygn	-	crystallin, gamma N	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-3727823-4	chr2	3727732	3727932	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025626, intron 1 of 3)	intron (NM_025626, intron 1 of 3)	14374.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45591517-2	chr7	45591417	45591617	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16341.0	NR_038165	71661.0	Mm.439894	NR_038165	ENSMUSG00000109644	0610005C13Rik	AI182092	RIKEN cDNA 0610005C13 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27282063-2	chr2	27281963	27282163	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_133905, intron 17 of 29)	intron (NR_133905, intron 17 of 29)	-34760.0	NM_138665	192166.0	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-127498371-3	chr3	127498275	127498475	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001327938, intron 1 of 47)	intron (NM_001327938, intron 1 of 47)	740.0	NM_001327938	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171504164-4	chr1	171504071	171504271	+	987.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_019484, exon 1 of 1)	exon (NM_019484, exon 1 of 1)	693.0	NM_019484	56009.0	Mm.389208	NM_019484	ENSMUSG00000060244	Alyref2	C130042O11Rik|REF2|Refbp2	Aly/REF export factor 2	protein-coding	3.25791330116709	4.00301151391072	3.4500771861565	3.26633158480981	3.3594618755597	3.40738879099193	4.17414942803068	2.40397944809926	-0.0677189603764237	0.910466439569678	0.998431161219273
Merged-chr17-5190236-4	chr17	5190144	5190344	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 4 of 19)	intron (NM_001085355, intron 4 of 19)	195170.0	NM_001085355	239985.0	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4456467-2	chr19	4456367	4456567	+	546.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_134164, intron 4 of 7)	intron (NM_134164, intron 4 of 7)	16908.0	NR_045989	319314.0	Mm.393810	NR_045989	ENSMUSG00000087132	A930001C03Rik	-	RIKEN cDNA A930001C03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-25749063-2	chr13	25748963	25749163	+	626.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	217253.0	NR_045062	100503530.0	Mm.86763	NR_045062	ENSMUSG00000086531	Gm11351	-	predicted gene 11351	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-122459383-4	chr7	122459264	122459464	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316672, intron 5 of 16)	intron (NM_001316672, intron 5 of 16)	170239.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-99559614-2	chr12	99559514	99559714	+	702.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4227.0	NR_136760	102639404.0	Mm.396324	NR_136760	ENSMUSG00000097917	Gm26839	-	predicted gene, 26839	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27622302-2	chr17	27622189	27622389	+	707.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_019837, intron 1 of 4)	intron (NM_019837, intron 1 of 4)	675.0	NM_001291046	56409.0	Mm.144699	NM_019837	ENSMUSG00000024213	Nudt3	1110011B09Rik|AA960325|Dipp|Dipp1	nudix (nucleotide diphosphate linked moiety X)-type motif 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126789381-2	chr7	126789281	126789481	+	628.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_019674, intron 2 of 8)	intron (NM_019674, intron 2 of 8)	2983.0	NM_001360464	56420.0	Mm.41998	NM_019674	ENSMUSG00000030697	Ppp4c	1110002D08Rik|AU016079|PP-X|PP4C|Ppx|pp4	protein phosphatase 4, catalytic subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-42943616-4	chr17	42943506	42943706	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-67182.0	NM_009847	12488.0	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding	1.66787308774472	1.17427045038679	1.51991812016364	1.75567520324446	2.30855238406894	2.49319051122916	1.16261052507766	1.49021711571505	1.4387418125143	0.217536974655023	0.708215074686404
Merged-chr10-85387746-5	chr10	85387592	85387792	+	688.76001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_028709, exon 1 of 17)	exon (NM_028709, exon 1 of 17)	878.0	NM_028709	74007.0	Mm.36544	NM_028709	ENSMUSG00000020042	Btbd11	6330404E16Rik	BTB (POZ) domain containing 11	protein-coding	-1.26687315729308	-1.51144556179868	-1.52074032698608	-1.52837532385482	-1.39377469321613	-1.50943134740853	-1.5186361958831	-1.52700866306571	-0.563662181339258	0.873093626595385	1
Merged-chr11-5996098-2	chr11	5995998	5996198	+	768.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001174054, intron 5 of 20)	intron (NM_001174054, intron 5 of 20)	40340.0	NM_019661	56418.0	Mm.294821	NM_019661	ENSMUSG00000002741	Ykt6	0610042I15Rik|1810013M05Rik|AW105923	YKT6 v-SNARE homolog (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-21261801-4	chr2	21261712	21261912	+	975.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56088.0	NM_177588	208967.0	Mm.268841	NM_177588	ENSMUSG00000048550	Thnsl1	AW413632	threonine synthase-like 1 (bacterial)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27822660-2	chr17	27822506	27822706	+	824.349976	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-2064.0	NM_001271511	224647.0	Mm.196577	NM_001033279	ENSMUSG00000056692	D17Wsu92e	AU020189|C030010A15|C80239	DNA segment, Chr 17, Wayne State University 92, expressed	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-21535396-2	chr5	21535296	21535496	+	653.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199632, intron 12 of 20)	IMPB_01|Satellite|Satellite	-8131.0	NM_028977	74511.0	Mm.439963	NM_028977	ENSMUSG00000039883	Lrrc17	37kDa|4833425M04Rik|6130400C22Rik|P37nb	leucine rich repeat containing 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-31839487-2	chr16	31839387	31839587	+	756.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357281, intron 13 of 22)	B3|SINE|B2	-39323.0	NM_013900	30060.0	Mm.30988	NM_013900	ENSMUSG00000022780	Meltf	CD228|MTf|Mfi2	melanotransferrin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120821573-4	chr8	120821445	120821645	+	792.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	82906.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-108492225-3	chr9	108492124	108492324	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168373, intron 1 of 26)	intron (NM_001168373, intron 1 of 26)	1548.0	NM_001168373	71472.0	Mm.289706	NM_027804	ENSMUSG00000006676	Usp19	8430421I07Rik|AI047774|Zmynd9	ubiquitin specific peptidase 19	protein-coding	3.23334673964485	4.04421875996042	2.95857694681035	2.75709470498067	2.84839982028801	2.82600691426713	3.09120505933967	3.41996144068454	-0.457051602238791	0.470331187562564	0.925692944111129
Merged-chr17-78249154-4	chr17	78249047	78249247	+	781.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015800, intron 2 of 16)	intron (NM_015800, intron 2 of 16)	48899.0	NM_015800	50766.0	Mm.311912	NM_015800	ENSMUSG00000024074	Crim1	AU015004	cysteine rich transmembrane BMP regulator 1 (chordin like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-145928179-3	chr3	145928166	145928366	+	632.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009740, intron 1 of 2)	MIRb|SINE|MIR	4004.0	NM_009740	12042.0	Mm.239141	NM_009740	ENSMUSG00000028191	Bcl10	AI132454|BCL-10|C81403|CARMEN|CIPER|CLAP|ME10|cE10	B cell leukemia/lymphoma 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-121116608-3	chr8	121116512	121116712	+	753.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_013519, exon 1 of 1)	5' UTR (NM_013519, exon 1 of 1)	441.0	NM_013519	14234.0	Mm.14092	NM_013519	ENSMUSG00000046714	Foxc2	Fkh14|Hfhbf3|MFH-1|Mfh1	forkhead box C2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-145616125-2	chr6	145616019	145616219	+	717.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009449, intron 1 of 4)	intron (NM_009449, intron 1 of 4)	156.0	NM_009449	22147.0	Mm.270295	NM_009449	ENSMUSG00000067338	Tuba3b	M[a]7|Tuba7	tubulin, alpha 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-43454696-2	chr16	43454596	43454796	+	880.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_181058, intron 2 of 6)	intron (NM_181058, intron 2 of 6)	-34500.0	NR_046026	626693.0	Mm.447083	NR_046026	ENSMUSG00000085499	Gm15713	-	predicted gene 15713	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-183294812-4	chr1	183294696	183294896	+	929.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_151660, exon 2 of 13)	non-coding (NR_151660, exon 2 of 13)	-2264.0	NM_181732	108909.0	Mm.290502	NM_145626	ENSMUSG00000042901	Aida	2610208M17Rik|BC004835	axin interactor, dorsalization associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-119386980-2	chr12	119386880	119387080	+	688.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56430.0	NM_001163136	238455.0	Mm.31376	NM_001163136	ENSMUSG00000041886	Macc1	4732474O15Rik|Gm267	metastasis associated in colon cancer 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-69990754-2	chr9	69990654	69990854	+	553.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001008238, intron 1 of 9)	intron (NM_001008238, intron 1 of 9)	1288.0	NM_001008238	12175.0	Mm.159777	NM_016787	ENSMUSG00000011958	Bnip2	5730523P12Rik|BNIP2beta|Nip21	BCL2/adenovirus E1B interacting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-130295109-2	chr2	130295009	130295209	+	859.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001110513)	promoter-TSS (NM_001110513)	-830.0	NM_001110513	228598.0	Mm.32582	NM_152993	ENSMUSG00000053552	Ebf4	Ebf3|O/E-4|Olf-1	early B cell factor 4	protein-coding	-1.11016764171264	-0.916116296307405	-0.929975219648516	-1.10706508665316	-1.1097070356249	-0.913737997343874	-0.925767174361498	-1.10673775975044	0.039947553886965	0.988807410209116	1
Merged-chr1-58741985-2	chr1	58741885	58742085	+	712.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355056, intron 7 of 8)	intron (NM_001355056, intron 7 of 8)	11433.0	NM_001293805	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21014824-4	chr9	21014745	21014945	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-1095.0	NM_010493	15894.0	Mm.435508	NM_010493	ENSMUSG00000037405	Icam1	CD54|Icam-1|Ly-47|MALA-2	intercellular adhesion molecule 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-7714867-2	chr9	7714767	7714967	+	554.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19236.0	NR_126562	102722.0	Mm.334941	NR_126562	ENSMUSG00000086381	AV064505	-	expressed sequence AV064505	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-80222425-2	chr17	80222325	80222525	+	825.116699	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-2026.0	NM_026053	67242.0	Mm.279985	NM_026053	ENSMUSG00000055760	Gemin6	2610019B15Rik|2810470M17Rik	gem nuclear organelle associated protein 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-57198457-4	chr17	57198358	57198558	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-4277.0	NM_019418	50930.0	Mm.483369	NM_019418	ENSMUSG00000005824	Tnfsf14	HVEM-L|HVEML|LIGHT|LTg|Ly113|Tnlg1d	tumor necrosis factor (ligand) superfamily, member 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-90747351-4	chr5	90747259	90747459	+	884.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11939.0	NM_009141	20311.0	Mm.4660	NM_009141	ENSMUSG00000029371	Cxcl5	AMCF-II|Cxcl6|ENA-78|GCP-2|LIX|Scyb5|Scyb6	chemokine (C-X-C motif) ligand 5	protein-coding	3.62518972688623	4.74925855681996	3.07530516293153	3.54498662121345	3.38941891129781	3.800667471293	2.29143099836982	3.63691689826157	-0.745044797666049	0.222862491426536	0.714692847149565
Merged-chr14-66237573-2	chr14	66237473	66237673	+	644.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	-23749.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-86578481-1	chr11	86578381	86578581	+	918.0	f0_balb.idr	Intergenic	Intergenic	5677.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-64110518-2	chr13	64110422	64110622	+	666.333374	f0_c57.idr|f1_c57bl6.idr	intron (NM_001001321, intron 6 of 11)	intron (NM_001001321, intron 6 of 11)	18808.0	NM_001001321	70484.0	Mm.133731	NM_001001321	ENSMUSG00000033114	Slc35d2	5730408I21Rik|SQV7L|UGTrel8|hfrc|mUGTrel8	solute carrier family 35, member D2	protein-coding	1.86466966388345	0.973643804501492	1.83156837897472	1.3690707485367	0.686681292257384	0.735428034468446	1.13570612125821	0.706491582035368	-3.41394831602146	0.0267519562435283	0.219189809303791
Merged-chr10-128549830-2	chr10	128549730	128549930	+	856.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018860)	promoter-TSS (NM_018860)	-662.0	NM_018860	67945.0	Mm.290786	NM_018860	ENSMUSG00000093674	Rpl41	1810055P16Rik|2210411K19Rik	ribosomal protein L41	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-60481470-2	chr9	60481370	60481570	+	879.400024	f1_balb.idr|f1_c57bl6.idr	intron (NM_001040426, intron 3 of 17)	intron (NM_001040426, intron 3 of 17)	29565.0	NM_001040426	207596.0	Mm.28791	NM_172444	ENSMUSG00000032289	Thsd4	ADAMTSL-6|ADAMTSL6|AI585901|Adamtsl4|B230114P05Rik	thrombospondin, type I, domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-24150698-1	chr16	24150598	24150798	+	571.0	f0_balb.idr	Intergenic	MIRc|SINE|MIR	-68008.0	NR_155457	108168278.0	Mm.417246	NR_155457		Gm46545	-	predicted gene, 46545	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-35061112-3	chr4	35061001	35061201	+	719.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178061, intron 2 of 3)	MT2B1|LTR|ERVL	-90954.0	NM_199157	387510.0	Mm.386929	NM_199157	ENSMUSG00000042993	Ifnk	-	interferon kappa	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-11772971-2	chr11	11772871	11773071	+	824.25	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001301868)	TTS (NM_001301868)	35991.0	NM_021891	60530.0	Mm.236114	NM_021891	ENSMUSG00000035455	Fignl1	-	fidgetin-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-56795025-2	chr6	56794925	56795125	+	614.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145958, intron 1 of 3)	intron (NM_145958, intron 1 of 3)	2188.0	NM_001362211	210973.0	Mm.57295	NM_145958	ENSMUSG00000059486	Kbtbd2	BC022962|Bklhd1|mKIAA1489	kelch repeat and BTB (POZ) domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-80240105-3	chr8	80240010	80240210	+	846.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-182102.0	NM_020259	15245.0	Mm.254493	NM_020259	ENSMUSG00000064325	Hhip	Hhip1	Hedgehog-interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-10924651-4	chr8	10924543	10924743	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_030715, exon 3 of 3)	non-coding (NR_030715, exon 3 of 3)	3814.0	NR_030715	665306.0	Mm.358758	NR_030715	ENSMUSG00000038917	3930402G23Rik	-	RIKEN cDNA 3930402G23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16902112-1	chr7	16902012	16902212	+	819.25	f0_balb.idr	Intergenic	Intergenic	-4378.0	NM_008967	19222.0	Mm.287572	NM_008967	ENSMUSG00000043017	Ptgir	IP|PGI2	prostaglandin I receptor (IP)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171387309-1	chr1	171387209	171387409	+	882.0	f1_balb.idr	3' UTR (NM_027893, exon 9 of 9)	3' UTR (NM_027893, exon 9 of 9)	-1651.0	NM_001005508	226652.0	Mm.251048	NM_001005508	ENSMUSG00000048865	Arhgap30	6030405P05Rik|Gm102|mFLJ00267	Rho GTPase activating protein 30	protein-coding	0.812092434620578	0.524285090757948	1.49028451930447	0.503411511688552	0.490223092712368	1.37163801773569	0.515181450107564	1.25178179118365	0.281029411935364	0.868920619946998	0.998431161219273
Merged-chr4-139203581-4	chr4	139203480	139203680	+	955.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271405, intron 1 of 8)	ID_B1|SINE|B4	9469.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165860432-1	chr2	165860332	165860532	+	562.0	f1_c57bl6.idr	intron (NM_001252587, intron 2 of 11)	intron (NM_001252587, intron 2 of 11)	-2259.0	NM_001252585	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-55044859-4	chr1	55044766	55044966	+	799.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7904.0	NM_026424	67876.0	Mm.281019	NM_026424	ENSMUSG00000025981	Coq10b	1500041J02Rik|1700030I21Rik|9530077A17Rik|AV002237|AW742641	coenzyme Q10B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-16182107-2	chr19	16182007	16182207	+	699.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008139, intron 1 of 6)	intron (NM_008139, intron 1 of 6)	18009.0	NR_033228	595139.0	Mm.405662	NR_033228		E030024N20Rik	9030417F11Rik|Ppia-ps8	peptidylprolyl isomerase A pseudogene 8	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-82869948-3	chr7	82869842	82870042	+	795.422241	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175366, exon 2 of 2)	exon (NM_175366, exon 2 of 2)	2609.0	NM_175366	108797.0	Mm.306789	NM_175366	ENSMUSG00000057706	Mex3b	4931439A04Rik|M-04814|Rkhd3|mKIAA2009	mex3 RNA binding family member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-178332724-2	chr1	178332624	178332824	+	608.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_149827, intron 6 of 16)	intron (NR_149827, intron 6 of 16)	5091.0	NM_016805	51810.0	Mm.86589	NM_016805	ENSMUSG00000039630	Hnrnpu	AA408410|AI256620|AL024194|AL024437|AW557595|C86794|Hnrpu|SAFA|Sp120|hnRNP U	heterogeneous nuclear ribonucleoprotein U	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-136294639-3	chr7	136294549	136294749	+	730.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_102277, intron 3 of 3)	intron (NR_102277, intron 3 of 3)	26325.0	NR_102277	77383.0	Mm.227745	NR_102277	ENSMUSG00000110027	C030029H02Rik	-	RIKEN cDNA C030029H02 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-75793546-2	chr7	75793446	75793646	+	645.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-54792.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-65524712-4	chr18	65524606	65524806	+	988.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_105742, intron 2 of 6)	intron (NR_105742, intron 2 of 6)	-55524.0	NM_207255	328977.0	Mm.286232	NM_207255	ENSMUSG00000042439	Zfp532	C530030I18Rik|Znf532|mKIAA1629	zinc finger protein 532	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-26465353-2	chr2	26465253	26465453	+	630.833374	f1_balb.idr|f1_c57bl6.idr	exon (NM_008714, exon 28 of 34)	exon (NM_008714, exon 28 of 34)	4766.0	NR_105962	102465602.0		NR_105962	ENSMUSG00000098548	Mir6996	Gm27531|mmu-mir-6996	microRNA 6996	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-40680668-2	chr19	40680568	40680768	+	678.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_009848, intron 1 of 9)	intron (NM_009848, intron 1 of 9)	20898.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-123345908-1	chr4	123345808	123346008	+	665.0	f1_balb.idr	Intergenic	B1_Mus1|SINE|Alu	-2656.0	NM_007558	12163.0	Mm.439749	NM_007558	ENSMUSG00000032726	Bmp8a	Bmp7r1|OP-2|OP2	bone morphogenetic protein 8a	protein-coding	-1.22315906685268	-1.19557143632602	-1.20673282037136	-0.55836125556573	-1.22265483704505	-1.19315271784257	-1.20420612767407	-1.21425999345206	-2.67891099987134	0.437057736398543	1
Merged-chr6-115987533-2	chr6	115987433	115987633	+	992.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026376, intron 1 of 35)	intron (NM_026376, intron 1 of 35)	7472.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180264287-2	chr1	180264187	180264387	+	599.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7987.0	NM_001128605	19165.0	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114678524-2	chr11	114678424	114678624	+	974.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_053273, intron 1 of 13)	intron (NM_053273, intron 1 of 13)	3056.0	NM_053273	117160.0	Mm.271934	NM_053273	ENSMUSG00000034714	Ttyh2	1110001A03Rik	tweety family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-7832070-2	chr9	7831970	7832170	+	774.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007465, intron 2 of 7)	L1_Mus1|LINE|L1	4736.0	NM_001291503	11797.0	Mm.335659	NM_007465	ENSMUSG00000057367	Birc2	AW146227|Api1|Api2|Birc3|C-IAP1|C330006D17Rik|HIAP1|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF48|cIAP1|cIAP2|mcIAP1	baculoviral IAP repeat-containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-73492557-4	chr5	73492458	73492658	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178896, intron 1 of 10)	CpG	1532.0	NM_178896	100737.0	Mm.220312	NM_178896	ENSMUSG00000051674	Dcun1d4	AI836376	DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	protein-coding	3.89047859993565	4.32883384030695	3.96135099679508	4.13803601282169	3.75443583690595	3.74078611180933	3.52751627765069	3.41744656982566	-0.668625219916651	0.147341848770019	0.597466522728415
Merged-chr11-45696763-2	chr11	45696663	45696863	+	672.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4B|LINE|L1	-111320.0	NR_045876	100009664.0	Mm.415439	NR_045876		F630206G17Rik	-	RIKEN cDNA F630206G17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-34924304-1	chr19	34924204	34924404	+	667.0	f1_c57bl6.idr	intron (NM_183046, intron 1 of 31)	intron (NM_183046, intron 1 of 31)	1946.0	NM_183046	240641.0	Mm.278471	NM_183046	ENSMUSG00000024795	Kif20b	33cex|C330014J10Rik|MPP1|Mphosph1|magoo	kinesin family member 20B	protein-coding	0.941877170775758	1.24372399003026	1.68832674587578	1.85818528294222	1.67221777049477	1.76581981565187	2.1234738587051	0.970320738747016	0.66630045221259	0.592160902354709	0.97015200361199
Merged-chr13-20038013-1	chr13	20037913	20038113	+	623.0	f1_balb.idr	Intergenic	Intergenic	-52494.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-77934391-2	chr18	77934291	77934491	+	797.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4076.0	NM_001195633	100502841.0	Mm.297782	NM_001195633	ENSMUSG00000039840	Epg5	4732475F16|5430411K18Rik|AI661957|AW456499|mKIAA1632	ectopic P-granules autophagy protein 5 homolog (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-118513758-2	chr1	118513658	118513858	+	968.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359347, intron 20 of 40)	RSINE1|SINE|B4	-54493.0	NR_027901	68204.0	Mm.443536	NR_027901	ENSMUSG00000107722	2900060B14Rik	-	RIKEN cDNA 2900060B14 gene	ncRNA	-0.208283783115327	-0.190719793063729	-0.196438776803222	0.56960718211407	-0.207177803637276	-0.189435193761239	-0.195174548196752	0.578527616610749	0.0282038014051437	0.990994131209618	1
Merged-chr7-78911648-2	chr7	78911548	78911748	+	863.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001162939)	TTS (NM_001162939)	-1776.0	NM_001291221	57444.0	Mm.322843	NM_020583	ENSMUSG00000039236	Isg20	1600023I01Rik|2010107M23Rik|20kDa|DnaQL|HEM45	interferon-stimulated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-147403472-2	chr4	147403330	147403530	+	881.7333369999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039209, intron 1 of 2)	MTD|LTR|ERVL-MaLR	-149847.0	NM_001014397	433804.0	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154	zinc finger protein 985	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-24633776-2	chr10	24633676	24633876	+	903.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	38334.0	NM_010217	14219.0	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-125434729-4	chr1	125434643	125434843	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205386, intron 2 of 12)	intron (NM_001205386, intron 2 of 12)	984.0	NM_001205386	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-21708629-3	chr17	21708524	21708724	+	879.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001008501, exon 2 of 6)	5' UTR (NM_001008501, exon 2 of 6)	883.0	NM_001008501	240034.0	Mm.34723	NM_001008501	ENSMUSG00000067928	Zfp760	9430018I06|BC029103	zinc finger protein 760	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75151673-3	chr11	75151561	75151761	+	576.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001002764, intron 15 of 18)	intron (NM_001002764, intron 15 of 18)	16491.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-117504261-2	chr5	117504162	117504362	+	629.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001312914, intron 2 of 19)	MTD|LTR|ERVL-MaLR	90260.0	NM_001312914	333050.0	Mm.437947	NM_001034873	ENSMUSG00000061578	Ksr2	-	kinase suppressor of ras 2	protein-coding	0.681456647153249	0.199809624254526	0.192602989547452	1.10546523997728	0.179065313189602	0.583683591870071	0.387120537442019	0.187991274799567	-1.68194824060146	0.392517427721536	1
Merged-chr1-9850286-1	chr1	9850186	9850386	+	583.0	f0_c57.idr	intron (NM_001037759, intron 1 of 16)	L2a|LINE|L2	2005.0	NM_001037759	170755.0	Mm.336410	NM_133220	ENSMUSG00000025915	Sgk3	2510015P22Rik|A330005P07Rik|Cisk|fy|fz	serum/glucocorticoid regulated kinase 3	protein-coding	-0.00432046394446495	0.0199984792567149	0.667558623796338	1.14455493002574	0.17237153444165	0.0217562722492555	0.0138815328275194	0.00708169598701888	-3.48418447948934	0.102121442018345	1
Merged-chr4-128839935-4	chr4	128839833	128840033	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33821.0	NM_001081098	230761.0	Mm.22616	NM_001081098	ENSMUSG00000028799	Zfp362	-	zinc finger protein 362	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-12223538-4	chr12	12223437	12223637	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38602.0	NM_029758	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-27731427-4	chr7	27731334	27731534	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029531)	promoter-TSS (NM_029531)	25.0	NM_009560	22718.0	Mm.66913	NM_009560	ENSMUSG00000037640	Zfp60	6330516O17Rik|AI426106|AI449354|Mfg-3|Mfg3	zinc finger protein 60	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-19941353-4	chr10	19941266	19941466	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008580, intron 1 of 29)	intron (NM_008580, intron 1 of 29)	6840.0	NM_008580	26408.0	Mm.6595	NM_008580	ENSMUSG00000071369	Map3k5	7420452D20Rik|ASK|ASK1|MAPKKK5|Mekk5	mitogen-activated protein kinase kinase kinase 5	protein-coding	-0.307719499767538	0.360817112278834	-0.296979725162757	-0.301004619564958	-0.30671793059183	-0.290616717664562	-0.295831814622967	0.470140876845699	0.324627527892289	0.89982063637916	1
Merged-chr7-97075194-4	chr7	97075105	97075305	+	849.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6546.0	NM_001162477	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55683929-4	chr19	55683843	55684043	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045318, intron 2 of 3)	MTD|LTR|ERVL-MaLR	18261.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	4.83451977236049	4.48651432359368	4.28760444087431	4.76266121034644	4.86887053326699	3.68001417799064	3.83101586799221	4.35500320586854	-0.420211464450316	0.319130277527917	0.821951596143819
Merged-chr17-51239653-3	chr17	51239554	51239754	+	941.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38334.0	NR_037260	100526491.0		NR_037260	ENSMUSG00000105182	Mir669a-9	mmu-mir-669a-9	microRNA 4669a-9	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-81862101-3	chr7	81861987	81862187	+	952.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291282)	promoter-TSS (NM_001291282)	-600.0	NM_001291282	107769.0	Mm.221412	NM_145375	ENSMUSG00000038623	Tm6sf1	AI428514|BC023123|C630016D09Rik	transmembrane 6 superfamily member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32801944-2	chr2	32801844	32802044	+	570.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113569, intron 14 of 19)	intron (NM_001113569, intron 14 of 19)	-17539.0	NM_025619	227736.0	Mm.441499	NM_025619	ENSMUSG00000038987	Cfap157	1700019L03Rik	cilia and flagella associated protein 157	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-90002882-4	chr11	90002776	90002976	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008796)	promoter-TSS (NM_008796)	18.0	NM_008796	18559.0	Mm.5062	NM_008796	ENSMUSG00000020553	Pctp	PC-TP|StarD2	phosphatidylcholine transfer protein	protein-coding	3.6052100041871	5.36500740260814	5.12693260896985	4.30461045808994	3.30308755508998	3.40407614467182	4.1653398019234	4.76011982917598	-0.908480489891132	0.0766704895837087	0.420298142259521
Merged-chr11-51916766-4	chr11	51916676	51916876	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50855.0	NM_029976	52626.0	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101604692-3	chr11	101604591	101604791	+	724.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6009.0	NM_001256318	666331.0	Mm.303457	NM_001256318		LOC666331	-	uncharacterized LOC666331	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-12948427-2	chr18	12948327	12948527	+	722.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-6586.0	NM_207530	64291.0	Mm.259470	NM_020573	ENSMUSG00000044252	Osbpl1a	G430090F17Rik|Gm753|ORP-1|Osbpl1b	oxysterol binding protein-like 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-137246683-2	chr7	137246583	137246783	+	587.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113415, intron 6 of 15)	intron (NM_001113415, intron 6 of 15)	12000.0	NR_045885	100038555.0	Mm.444788	NR_045885	ENSMUSG00000109722	Gm10578	-	predicted gene 10578	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-24741780-3	chr12	24741671	24741871	+	860.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	33517.0	NM_009104	20135.0	Mm.99	NM_009104	ENSMUSG00000020649	Rrm2	AA407299|R2	ribonucleotide reductase M2	protein-coding	0.332657391782729	0.366765657588812	0.355807939548258	0.347213834703664	0.804564976324527	1.61547742237013	0.914056403552374	0.724666796663054	4.67299132608362	0.00694447105775334	0.0847319631365335
Merged-chr5-102035747-2	chr5	102035647	102035847	+	702.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 2 of 66)	intron (NM_172882, intron 2 of 66)	34174.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-11424825-2	chr16	11424725	11424925	+	662.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028964, intron 11 of 20)	intron (NM_028964, intron 11 of 20)	19177.0	NM_001290148	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-90426329-4	chr16	90426215	90426415	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015755, intron 1 of 10)	intron (NM_015755, intron 1 of 10)	39918.0	NM_015755	26559.0	Mm.125874	NM_015755	ENSMUSG00000053414	Hunk	Bstk1|Mak-v	hormonally upregulated Neu-associated kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-110919924-2	chr7	110919824	110920024	+	738.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_194464, intron 10 of 20)	L1MB3|LINE|L1	14939.0	NR_045267	100504184.0	Mm.441327	NR_045267	ENSMUSG00000087160	Gm16336	-	predicted gene 16336	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-20105629-4	chr14	20105533	20105733	+	908.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22461.0	NM_026209	67509.0	Mm.292423	NM_026209	ENSMUSG00000045107	Saysd1	1810063B07Rik|4930488P03Rik	SAYSVFN motif domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-120060196-2	chr9	120060096	120060296	+	713.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009987, intron 1 of 1)	B1_Mus1|SINE|Alu	8100.0	NM_009987	13051.0	Mm.44065	NM_009987	ENSMUSG00000052336	Cx3cr1	-	chemokine (C-X3-C motif) receptor 1	protein-coding	0.0564646172590056	0.0802162261130001	0.275349567752865	0.870100216261076	0.0579715613719533	0.0819390746423501	0.0742271922188907	1.04798859881401	0.200732142087563	0.92490071288362	1
Merged-chr5-141240904-2	chr5	141240804	141241004	+	840.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177879)	promoter-TSS (NM_177879)	-630.0	NM_177879	330222.0	Mm.151931	NM_177879	ENSMUSG00000039683	Sdk1	5330440E10|6720466O15Rik	sidekick cell adhesion molecule 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91931573-4	chr16	91931455	91931655	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138597)	promoter-TSS (NM_138597)	75.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-152012465-2	chr4	152012365	152012565	+	593.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001033352, exon 2 of 4)	exon (NM_001033352, exon 2 of 4)	3574.0	NM_001033352	242785.0	Mm.22306	NM_001033352	ENSMUSG00000073700	Klhl21	1810045K06Rik|D330008A20|mKIAA0469	kelch-like 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36511793-4	chr1	36511714	36511914	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053186)	promoter-TSS (NM_053186)	-53.0	NM_001331209	94218.0	Mm.256323	NM_053186	ENSMUSG00000001138	Cnnm3	Acdp3|Clp3|mACDP3	cyclin M3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-48908917-4	chr7	48908821	48909021	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27325.0	NM_001360812	108961.0	Mm.240566	NM_001013368	ENSMUSG00000046179	E2f8	4432406C08Rik|AA410048	E2F transcription factor 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-86273513-4	chr15	86273416	86273616	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145476, intron 4 of 12)	intron (NM_145476, intron 4 of 12)	-4159.0	NM_001358062	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-45388457-2	chr16	45388357	45388557	+	602.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358443, intron 4 of 4)	intron (NM_001358443, intron 4 of 4)	20596.0	NM_001358443	17470.0	Mm.245851	NM_010818	ENSMUSG00000022661	Cd200	Mox2|OX2	CD200 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-69486229-4	chr12	69486147	69486347	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-10697.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-133132884-4	chr1	133132778	133132978	+	838.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_133819, exon 1 of 2)	exon (NM_133819, exon 1 of 2)	1712.0	NM_133819	108954.0	Mm.293628	NM_133819	ENSMUSG00000046062	Ppp1r15b	1810033K10Rik|AI606441|C530022L24Rik|CReP	protein phosphatase 1, regulatory (inhibitor) subunit 15b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-32342544-2	chr4	32342444	32342644	+	747.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-74891.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-103020978-3	chr14	103020884	103021084	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045657, intron 2 of 2)	intron (NR_045657, intron 2 of 2)	12819.0	NR_045657	71264.0	Mm.399572	NR_045657	ENSMUSG00000114980	4933432I03Rik	-	RIKEN cDNA 4933432I03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124723808-4	chr6	124723722	124723922	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077705, intron 11 of 15)	intron (NM_001077705, intron 11 of 15)	-5432.0	NR_029792	723944.0		NR_029792	ENSMUSG00000065462	Mir200c	Mirn200c|mir-200c	microRNA 200c	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-29435600-4	chr17	29435485	29435685	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1N2|LTR|ERVL-MaLR	-55460.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-49798898-2	chr12	49798798	49798998	+	837.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-318036.0	NR_045472	69054.0	Mm.417838	NR_045472	ENSMUSG00000100844	1810007C17Rik	-	RIKEN cDNA 1810007C17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65283490-2	chr9	65283390	65283590	+	570.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10770.0	NM_011802	270166.0	Mm.30088	NM_011802	ENSMUSG00000015357	Clpx	AU014732|E330029I21	caseinolytic mitochondrial matrix peptidase chaperone subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-84590365-4	chr1	84590261	84590461	+	848.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152915, intron 1 of 12)	intron (NM_152915, intron 1 of 12)	-105478.0	NR_039588	100628595.0		NR_039588	ENSMUSG00000093254	Mir5126	mir-5126|mmu-mir-5126|mu-mir-5126	microRNA 5126	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-24919911-2	chr7	24919811	24920011	+	682.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001130151, intron 15 of 29)	intron (NM_001130151, intron 15 of 29)	15565.0	NM_001130152	16801.0	Mm.3181	NM_008488	ENSMUSG00000040940	Arhgef1	Lbcl2|Lsc	Rho guanine nucleotide exchange factor (GEF) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-46250474-2	chr17	46250374	46250574	+	583.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145353, intron 4 of 8)	intron (NM_145353, intron 4 of 8)	2394.0	NM_145353	28064.0	Mm.248769	NM_145353	ENSMUSG00000071074	Yipf3	C6orf109|D17Wsu94e|KLIP1	Yip1 domain family, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90508188-2	chr2	90508088	90508288	+	785.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	-29014.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-24610722-4	chr7	24610624	24610824	+	860.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001102613)	promoter-TSS (NM_001102613)	-604.0	NM_001102613	232970.0	Mm.333663	NM_001102613	ENSMUSG00000074277	Phldb3	EG232970|Gm10102	pleckstrin homology like domain, family B, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-97237152-2	chr15	97237052	97237252	+	802.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-9955.0	NM_172293	239647.0	Mm.130036	NM_172293	ENSMUSG00000044250	Pced1b	Fam113b	PC-esterase domain containing 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-94688283-4	chr15	94688201	94688401	+	836.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178789, intron 2 of 7)	intron (NM_178789, intron 2 of 7)	59116.0	NM_178789	320709.0	Mm.74873	NM_178789	ENSMUSG00000063296	Tmem117	B930062P21Rik	transmembrane protein 117	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-105094814-2	chr1	105094714	105094914	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-261193.0	NR_151539	100504568.0	Mm.321153	NR_151538	ENSMUSG00000097482	Gm17634	-	predicted gene, 17634	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45362947-3	chr7	45362872	45363072	+	903.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029741, intron 1 of 29)	intron (NM_029741, intron 1 of 29)	-3189.0	NR_015480	50994.0	Mm.389897	NM_016664	ENSMUSG00000091510	Mtag2	MAG	metastasis associated gene 2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105218159-3	chr8	105218063	105218263	+	892.2000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001161457)	TTS (NM_001161457)	-7025.0	NM_145604	234678.0	Mm.27186	NM_145604	ENSMUSG00000031889	D230025D16Rik	BC006874|Lin10	RIKEN cDNA D230025D16 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-30196014-3	chr11	30195910	30196110	+	812.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175836, intron 1 of 34)	intron (NM_175836, intron 1 of 34)	2247.0	NM_009260	20742.0	Mm.123110	NM_009260	ENSMUSG00000020315	Sptbn1	9930031C03Rik|AL033301|SPTB2|Spnb-2|Spnb2|elf1|elf3|mKIAA4049	spectrin beta, non-erythrocytic 1	protein-coding	1.70386002099659	1.89998072064003	2.01634101024102	2.35559138549771	1.8776485755846	2.92602223963073	2.74428298735825	2.74172409920821	1.40064344329083	0.10091390051755	0.494458880374175
Merged-chr6-34608805-4	chr6	34608697	34608897	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347100, intron 1 of 13)	intron (NM_001347100, intron 1 of 13)	10293.0	NM_001347100	109624.0	Mm.308134	NM_145575	ENSMUSG00000029761	Cald1	4833423D12Rik|AI195384|AV071549|AW536160|C920027I18Rik	caldesmon 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94586779-2	chr10	94586679	94586879	+	623.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_106070)	promoter-TSS (NR_106070)	-580.0	NR_106070	102466817.0		NR_106070	ENSMUSG00000098544	Mir7211	Gm27536|mmu-mir-7211	microRNA 7211	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-99112302-4	chr9	99112190	99112390	+	921.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029094, intron 2 of 23)	intron (NM_029094, intron 2 of 23)	27921.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-44064825-2	chr1	44064725	44064925	+	972.9166869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37616.0	NM_029368	75623.0	Mm.348017	NM_029368	ENSMUSG00000026049	Tex30	1700029F09Rik|3110030D08Rik	testis expressed 30	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80295824-4	chr10	80295704	80295904	+	944.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 1 of 4)	intron (NR_038088, intron 1 of 4)	3295.0	NM_001310726	20054.0	Mm.643	NM_009091	ENSMUSG00000063457	Rps15	rig	ribosomal protein S15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5088020-4	chr19	5087937	5088137	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026553)	promoter-TSS (NM_026553)	-501.0	NM_026553	68090.0	Mm.44202	NM_026553	ENSMUSG00000024875	Yif1a	5330422J23Rik|54TM|Yif1|Yif1p	Yip1 interacting factor homolog A (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91220227-2	chr16	91220127	91220327	+	827.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-5323.0	NM_016967	50913.0	Mm.37289	NM_016967	ENSMUSG00000039830	Olig2	AI604895|Bhlhb1|Olg-2|Oligo2|RK17|bHLHe19	oligodendrocyte transcription factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-103008732-2	chr11	103008632	103008832	+	613.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_026551, intron 1 of 4)	ID_B1|SINE|B4	8415.0	NM_026551	68087.0	Mm.277449	NM_026551	ENSMUSG00000020935	Dcakd	3010024O21Rik|6720485C15Rik|AI849483	dephospho-CoA kinase domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-32143357-4	chr17	32143272	32143472	+	920.31665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008716, exon 24 of 33)	exon (NM_008716, exon 24 of 33)	23480.0	NM_008716	18131.0	Mm.439741	NM_008716	ENSMUSG00000038146	Notch3	AW229011|N3|hpbk	notch 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-60674481-4	chr13	60674356	60674556	+	962.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	72245.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	1.94670309547034	1.85135859628157	2.50277164807115	0.658668506469813	0.868839133093008	0.705927797289944	0.682680752701357	0.661997403763401	-4.64942873821549	0.00232115280979608	0.0373092985506389
Merged-chr5-103732785-4	chr5	103732625	103732825	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21437.0	NM_133919	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-70111976-4	chr12	70111883	70112083	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_104398)	promoter-TSS (NR_104398)	52.0	NM_001286080	18080.0	Mm.244047	NM_008697	ENSMUSG00000021068	Nin	3110068G20Rik|AI385615|AU024711|mKIAA1565	ninein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-148681555-4	chr2	148681466	148681666	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355689, intron 1 of 5)	intron (NM_001355689, intron 1 of 5)	446.0	NM_028986	74533.0	Mm.136913	NM_028986	ENSMUSG00000027439	Gzf1	8430437G08Rik|Zfp336|mGZF1	GDNF-inducible zinc finger protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100952213-4	chr7	100952095	100952295	+	991.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183168, intron 1 of 2)	intron (NM_183168, intron 1 of 2)	12171.0	NM_183168	233571.0	Mm.235193	NM_183168	ENSMUSG00000048779	P2ry6	2010204J23Rik|P2Y6	pyrimidinergic receptor P2Y, G-protein coupled, 6	protein-coding	1.34261997598476	0.632404440139426	0.620236824046557	0.96881867769082	1.05027058122084	0.635119873842655	1.76688894651216	0.974533459262764	1.03744565667031	0.49778341345609	0.936897994490085
Merged-chr19-12792458-2	chr19	12792358	12792558	+	683.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_053009, intron 1 of 10)	intron (NM_053009, intron 1 of 10)	3665.0	NR_024093	664779.0	Mm.290924	NM_001039718	ENSMUSG00000024695	Gm44505	Zfp91-Cntf|Zfp91Cntf	predicted readthrough transcript (NMD candidate), 44505	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-143740163-4	chr1	143740092	143740292	+	902.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001038594)	promoter-TSS (NM_001038594)	-255.0	NM_001038594	69367.0	Mm.272727	NM_023505	ENSMUSG00000018196	Glrx2	1700010P22Rik|AI645710|Grx2	glutaredoxin 2 (thioltransferase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-157876885-1	chr3	157876785	157876985	+	621.0	f0_balb.idr	Intergenic	Intergenic	48178.0	NM_145953	107869.0	Mm.28301	NM_145953	ENSMUSG00000028179	Cth	0610010I13Rik|AI314617|BC019483|CSE|Cys3	cystathionase (cystathionine gamma-lyase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140342679-2	chr5	140342579	140342779	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172277, intron 10 of 10)	ID_B1|SINE|B4	10723.0	NM_001356584	17766.0	Mm.118846	NM_008637	ENSMUSG00000036639	Nudt1	Mth1	nudix (nucleoside diphosphate linked moiety X)-type motif 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-64941980-4	chr16	64941900	64942100	+	948.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008310, intron 2 of 2)	RLTR14|LTR|ERV1	89999.0	NM_178647	106143.0	Mm.10160	NM_178647	ENSMUSG00000054604	Cggbp1	AA960172|AL023996|AW045841	CGG triplet repeat binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-77954583-3	chr18	77954497	77954697	+	961.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195633, intron 4 of 43)	intron (NM_001195633, intron 4 of 43)	16130.0	NM_001195633	100502841.0	Mm.297782	NM_001195633	ENSMUSG00000039840	Epg5	4732475F16|5430411K18Rik|AI661957|AW456499|mKIAA1632	ectopic P-granules autophagy protein 5 homolog (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-21179310-4	chr2	21179179	21179379	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26086.0	NM_027728	71233.0	Mm.27658	NM_027728	ENSMUSG00000026679	Enkur	4933434I06Rik|AU016229	enkurin, TRPC channel interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-47644454-4	chr9	47644345	47644545	+	864.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	L1MC4a|LINE|L1	114093.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	1.26775813715543	1.59135955421603	0.692611505672243	0.68053329932557	0.663100265500744	1.60622932835282	1.91323486314036	0.68265834730841	0.79694241725997	0.60973032321229	0.974992433107985
Merged-chr7-80179494-3	chr7	80179361	80179561	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7380.0	NM_013659	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	3.82910439087656	2.39882918353688	4.12643067629977	2.85892588693387	2.51512513705622	1.43325017537456	2.1449479235979	1.61997276963831	-2.68741543754812	0.00105009220243834	0.0202070339859722
Merged-chr2-59228982-7	chr2	59228869	59229069	+	871.569031	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 2 of 20)	MTC|LTR|ERVL-MaLR	68119.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-24051940-2	chr5	24051843	24052043	+	845.0	f0_balb.idr|f1_balb.idr	Intergenic	RMER2|LTR|ERV1	-21253.0	NM_053090	84652.0	Mm.304976	NM_053090	ENSMUSG00000028995	Fam126a	AB030242|Drctnnb1a	family with sequence similarity 126, member A	protein-coding	0.984753516642923	1.72757619210068	1.09183092422573	1.80159635156438	3.97691360275341	1.96447441715878	2.2257021809027	2.87581532900321	3.46122135137216	0.000780272313063358	0.0158493914426651
Merged-chr2-80038671-4	chr2	80038563	80038763	+	776.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001355142, exon 1 of 15)	5' UTR (NM_001355142, exon 1 of 15)	239.0	NM_001355142	18573.0	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97802985-2	chr6	97802885	97803085	+	748.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4073.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-128334548-3	chr6	128334450	128334650	+	841.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011657, exon 3 of 11)	exon (NM_011657, exon 3 of 11)	21301.0	NM_011657	22158.0	Mm.291783	NM_011657	ENSMUSG00000001521	Tulp3	2310022L06Rik|AI316887	tubby-like protein 3	protein-coding	0.597786271411016	0.652266055165908	2.05630479755824	0.621325462553499	0.982086399414028	0.656082167040904	1.74300334429062	1.4645579871723	0.291311823901102	0.852816021931664	0.998431161219273
Merged-chr7-80097744-2	chr7	80097644	80097844	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173011, intron 7 of 10)	intron (NM_173011, intron 7 of 10)	17606.0	NM_173011	269951.0	Mm.246432	NM_173011	ENSMUSG00000030541	Idh2	E430004F23|IDPm|Idh-2	isocitrate dehydrogenase 2 (NADP+), mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-27333400-2	chr7	27333300	27333500	+	742.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001310678, exon 1 of 23)	exon (NM_001310678, exon 1 of 23)	248.0	NM_001113549	108075.0	Mm.272251	NM_175641	ENSMUSG00000040488	Ltbp4	2310046A13Rik	latent transforming growth factor beta binding protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132950455-1	chr4	132950355	132950555	+	730.0	f1_balb.idr	Intergenic	Intergenic	-23640.0	NM_010208	14191.0	Mm.271665	NM_010208	ENSMUSG00000028874	Fgr	-	FGR proto-oncogene, Src family tyrosine kinase	protein-coding	1.99629575175249	2.14876583542337	1.13051830531288	1.90711038545332	1.82336403610524	1.77490351979798	1.13536481953859	2.11943405163478	-0.253710296839945	0.822006166027549	0.998431161219273
Merged-chr1-184174632-4	chr1	184174534	184174734	+	835.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	140253.0	NM_022019	63953.0	Mm.404024	NM_022019	ENSMUSG00000039384	Dusp10	2610306G15Rik|AI158871|MKP-5|MKP5	dual specificity phosphatase 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122498027-1	chr8	122497927	122498127	+	1000.0	f1_balb.idr	intron (NM_001037298, intron 15 of 50)	intron (NM_001037298, intron 15 of 50)	21884.0	NR_152823	66965.0	Mm.482288	NM_153775	ENSMUSG00000049482	Ctu2	2310061F22Rik|C16orf84|Ncs2	cytosolic thiouridylase subunit 2	protein-coding	-2.05752322593321	-2.15521190974092	-2.16307242109104	-2.16952927915413	-2.17938029103484	-2.15350850414045	-2.16129297361887	-2.16837350464794	-0.683654500252594	0.846597994014493	1
Merged-chr11-119419509-4	chr11	119419399	119419599	+	958.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29027.0	NR_035453	100316690.0		NR_035453	ENSMUSG00000088015	Mir1932	mir-1932|mmu-mir-1932	microRNA 1932	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-145116083-2	chr3	145115983	145116183	+	572.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2506.0	NM_001162539	52184.0	Mm.259105	NM_025714	ENSMUSG00000028256	Odf2l	4733401D09Rik|9630045K08Rik|D3Ertd250e	outer dense fiber of sperm tails 2-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89794208-2	chr3	89794108	89794308	+	581.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20599.0	NM_027315	70093.0	Mm.41438	NM_027315	ENSMUSG00000042572	Ube2q1	1110002C01Rik|2310012M18Rik|AI854014|Gtap|NICE-5|PRO3094|Ube2q	ubiquitin-conjugating enzyme E2Q family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91232089-2	chr16	91231989	91232189	+	553.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6539.0	NM_016967	50913.0	Mm.37289	NM_016967	ENSMUSG00000039830	Olig2	AI604895|Bhlhb1|Olg-2|Oligo2|RK17|bHLHe19	oligodendrocyte transcription factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55787907-2	chr14	55787807	55788007	+	881.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_019955, exon 3 of 10)	exon (NM_019955, exon 3 of 10)	950.0	NM_001164107	56532.0	Mm.46612	NM_019955	ENSMUSG00000022221	Ripk3	2610528K09Rik|AW107945|Rip3	receptor-interacting serine-threonine kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-120826893-4	chr4	120826763	120826963	+	953.2416380000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001048168, intron 1 of 9)	intron (NM_001048168, intron 1 of 9)	-1122.0	NM_008692	18046.0	Mm.318389	NM_008692	ENSMUSG00000032897	Nfyc	-	nuclear transcription factor-Y gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-141083890-2	chr5	141083790	141083990	+	622.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-83294.0	NM_175362	108723.0	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-120454259-4	chr6	120454172	120454372	+	962.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8925.0	NM_008359	16172.0	Mm.4481	NM_008359	ENSMUSG00000002897	Il17ra	AW538159|Cdw217|Il17r|VDw217	interleukin 17 receptor A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-49751042-2	chr2	49750942	49751142	+	835.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008449, intron 22 of 25)	intron (NM_008449, intron 22 of 25)	-36644.0	NM_027990	71897.0	Mm.41381	NM_027990	ENSMUSG00000026765	Lypd6b	2310010M24Rik|AW049525	LY6/PLAUR domain containing 6B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-112288527-2	chr5	112288427	112288627	+	734.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001326590, intron 1 of 5)	intron (NM_001326590, intron 1 of 5)	11836.0	NM_009419	22022.0	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-139387127-2	chr7	139387027	139387227	+	613.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1982.0	NM_183144	212111.0	Mm.28308	NM_183144	ENSMUSG00000025477	Inpp5a	-	inositol polyphosphate-5-phosphatase A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-58073471-2	chr19	58073386	58073586	+	563.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_181415, intron 28 of 28)	intron (NM_181415, intron 28 of 28)	22319.0	NR_049196	100885835.0		NR_049196	ENSMUSG00000093757	Mir5623	Gm26068|mir-5623|mmu-mir-5623	microRNA 5623	ncRNA	0.662981046475354	1.08599637558185	0.721716663603072	1.63661600483556	0.495607892438302	0.529678291995913	1.04771899061888	0.703782194861031	-1.84114286940014	0.238703780094226	0.735356372878428
Merged-chr7-75700941-4	chr7	75700846	75701046	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 16 of 36)	intron (NM_029332, intron 16 of 36)	-147392.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-87755930-4	chr1	87755837	87756037	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001205391)	promoter-TSS (NM_001205391)	-74.0	NM_029846	77040.0	Mm.272972	NM_029846	ENSMUSG00000026289	Atg16l1	1500009K01Rik|Apg16l|Atg16l|WDR30	autophagy related 16-like 1 (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122111925-1	chr8	122111825	122112025	+	857.3333130000001	f0_balb.idr	Intergenic	Intergenic	133901.0	NR_106096	102466915.0		NR_106096	ENSMUSG00000099140	Mir7237	Gm27482|mmu-mir-7237	microRNA 7237	ncRNA	-0.306288498212908	-0.669412323424969	-0.672794092472735	-0.0484352269702357	-0.679074449779569	-0.668649230055878	-0.672048718409592	-0.674944356708704	-3.26713232197836	0.25123167214267	1
Merged-chr8-13413567-2	chr8	13413467	13413667	+	731.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011881, intron 5 of 6)	intron (NM_011881, intron 5 of 6)	8486.0	NM_011881	24013.0	Mm.257501	NM_011881	ENSMUSG00000031450	Grk1	Gprk1|Rhok|Rk	G protein-coupled receptor kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-26068475-4	chr12	26068405	26068605	+	970.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	142000.0	NR_131149	629481.0	Mm.390460	NR_131149	ENSMUSG00000113550	Gm29687	-	predicted gene, 29687	ncRNA	1.91851887895801	2.02181634909062	1.23353462091744	1.76695285006063	1.93408211795729	2.28331299491116	1.8284058780124	2.40682005637291	1.00952798030449	0.307746760352435	0.808836493842255
Merged-chr13-116712448-4	chr13	116712360	116712560	+	849.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	125718.0	NR_153406	74680.0	Mm.488118	NR_153406	ENSMUSG00000114290	4930435F18Rik	-	RIKEN cDNA 4930435F18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-113146849-3	chr12	113146694	113146894	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5218.0	NM_007763	12925.0	Mm.272368	NM_007763	ENSMUSG00000006360	Crip1	CRHP|CRP1|Crip	cysteine-rich protein 1 (intestinal)	protein-coding	2.91651731121252	2.63740986617938	2.54818312124079	2.18215704828689	3.60101149786773	2.90643422357099	2.91467894478865	2.35041461389372	0.810940726734492	0.261303868276189	0.762408459680314
Merged-chr10-12610121-2	chr10	12610021	12610221	+	939.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011682, intron 50 of 73)	intron (NM_011682, intron 50 of 73)	251614.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	-0.260637588872469	-0.503396665492628	-0.506827796274089	-0.509464710143572	-0.254488837626568	-0.502621170489125	0.0484951169301298	-0.509004697560567	1.70984321786445	0.517717645269558	1
Merged-chr19-38025528-4	chr19	38025426	38025626	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302140, intron 1 of 53)	intron (NM_001302140, intron 1 of 53)	18051.0	NM_001099634	226101.0	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding	5.8048856545366	5.13566718487831	5.97861333132584	5.84361511712436	5.95926380701392	5.5079184712143	5.67091008290312	5.78425728806178	0.0159013611201436	0.95244453656964	0.998431161219273
Merged-chr4-34526914-4	chr4	34526805	34527005	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23710.0	NM_001007589	433693.0	Mm.389532	NM_026019	ENSMUSG00000028291	Akirin2	2700059D21Rik|AA114675|AA522011|AU019887|Akirin-2	akirin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-31805293-3	chr18	31805193	31805393	+	822.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028866, intron 1 of 21)	intron (NM_028866, intron 1 of 21)	1236.0	NM_001170966	74320.0	Mm.277705	NM_028866	ENSMUSG00000024400	Wdr33	1110001N06Rik|2310011G05Rik|2810021O11Rik|8430413N20Rik|WDC146	WD repeat domain 33	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-34577700-3	chr2	34577598	34577798	+	946.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290625, intron 8 of 11)	intron (NM_001290625, intron 8 of 11)	170847.0	NM_001290626	227743.0	Mm.270866	NM_177345	ENSMUSG00000038696	Mapkap1	AI591529|D230039K05Rik|Sin1	mitogen-activated protein kinase associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-63562036-4	chr4	63561954	63562154	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144905, intron 2 of 9)	intron (NM_144905, intron 2 of 9)	1827.0	NM_144905	230279.0	Mm.41523	NM_144905	ENSMUSG00000045917	Tmem268	6330416G13Rik|AW492431|bM230C2.2	transmembrane protein 268	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-62045968-1	chr15	62045868	62046068	+	552.0	f1_balb.idr	intron (NR_132746, intron 1 of 6)	intron (NR_132746, intron 1 of 6)	6711.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-49471110-2	chr7	49471010	49471210	+	559.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175272, intron 10 of 37)	intron (NM_175272, intron 10 of 37)	165725.0	NM_001005232	13172.0	Mm.307176	NM_001005232	ENSMUSG00000030507	Dbx1	AI426026|Dbx	developing brain homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83779231-2	chr6	83779131	83779331	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3419.0	NM_009357	21766.0	Mm.28371	NM_009357	ENSMUSG00000014748	Tex261	3110001O07Rik|AA409339|AI480706|AL033351|TEG-261	testis expressed gene 261	protein-coding	1.29517838787227	2.00182929035639	0.983048636568217	1.8673605938894	1.30518235315861	2.01828140819707	0.987414727608186	1.87795444845336	0.035406316367862	0.977013841095307	0.998431161219273
Merged-chr11-84351456-4	chr11	84351366	84351566	+	967.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133360, intron 43 of 53)	intron (NM_133360, intron 43 of 53)	156028.0	NM_133360	107476.0	Mm.31374	NM_133360	ENSMUSG00000020532	Acaca	A530025K05Rik|Acac|Acc1|Gm738	acetyl-Coenzyme A carboxylase alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24523164-1	chr17	24523064	24523264	+	996.0	f1_balb.idr	intron (NM_001172113, intron 1 of 20)	intron (NM_001172113, intron 1 of 20)	4774.0	NM_153792	224619.0	Mm.275150	NM_153792	ENSMUSG00000052752	Traf7	RFWD1	TNF receptor-associated factor 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-24477076-2	chr16	24476976	24477176	+	568.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 3 of 12)	intron (NM_178665, intron 3 of 12)	28985.0	NM_001145952	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-82009414-2	chr11	82009314	82009514	+	736.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-26163.0	NM_011333	20296.0	Mm.290320	NM_011333	ENSMUSG00000035385	Ccl2	AI323594|HC11|JE|MCAF|MCP-1|MCP1|SMC-CF|Scya2|Sigje	chemokine (C-C motif) ligand 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19466982-3	chr7	19466932	19467132	+	719.7023929999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-8538.0	NM_172279	232944.0	Mm.260504	NM_172279	ENSMUSG00000030397	Mark4	2410090P21Rik|C79806|Markl1	MAP/microtubule affinity regulating kinase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-67820121-2	chr5	67820021	67820221	+	721.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038999, intron 1 of 36)	intron (NM_001038999, intron 1 of 36)	27310.0	NM_009727	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70607576-5	chr8	70607473	70607673	+	930.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133772, intron 1 of 16)	intron (NM_133772, intron 1 of 16)	741.0	NM_133772	76900.0	Mm.6667	NM_133772	ENSMUSG00000070003	Ssbp4	1210002E11Rik|AW743380|Sspb4	single stranded DNA binding protein 4	protein-coding	1.20148728514574	0.645922834515646	0.417287182720324	0.409657636906485	1.42747884314528	0.429253102451444	0.419454340866485	0.898411718053826	0.70810702693675	0.692267439775438	1
Merged-chr5-31883444-2	chr5	31883344	31883544	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144541, intron 6 of 11)	intron (NM_144541, intron 6 of 11)	185394.0	NM_144541	107976.0	Mm.482126	NM_144541	ENSMUSG00000052139	Babam2	6030405P19Rik|AI429776|B830038C02Rik|Bre	BRISC and BRCA1 A complex member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-60836707-2	chr2	60836607	60836807	+	559.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001141932, intron 2 of 14)	intron (NM_001141932, intron 2 of 14)	44731.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-11345424-3	chr16	11345333	11345533	+	773.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028964, intron 1 of 20)	intron (NM_028964, intron 1 of 20)	22529.0	NM_028964	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-10911219-4	chr8	10911085	10911285	+	924.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11263.0	NR_102285	71624.0	Mm.139075	NR_102285	ENSMUSG00000109089	4833411C07Rik	-	RIKEN cDNA 4833411C07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115813558-2	chr11	115813458	115813658	+	856.2000119999999	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080643)	promoter-TSS (NM_080643)	34.0	NM_080643	140721.0	Mm.383737	NM_080643	ENSMUSG00000034471	Caskin2	1600028L06Rik|mKIAA1139	CASK-interacting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-76220581-3	chr16	76220479	76220679	+	899.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR90A|LTR|LTR	97966.0	NR_040575	78215.0	Mm.243885	NR_040575		4930578N18Rik	-	RIKEN cDNA 4930578N18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30709258-2	chr2	30709158	30709358	+	751.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11952.0	NR_037272	100526499.0		NR_037272	ENSMUSG00000093091	Mir3089	mir-3089|mmu-mir-3089	microRNA 3089	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-72384373-4	chr2	72384280	72384480	+	918.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023057, intron 9 of 19)	intron (NM_023057, intron 9 of 19)	-91839.0	NM_025866	66953.0	Mm.270676	NM_025866	ENSMUSG00000055612	Cdca7	2310021G01Rik|AU044109|JPO1	cell division cycle associated 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-12468657-4	chr13	12468551	12468751	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6913.0	NM_001291057	56048.0	Mm.474138	NM_018886	ENSMUSG00000057554	Lgals8	1200015E08Rik|AI326142|D13Ertd524e|Lgals-8	lectin, galactose binding, soluble 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96557880-4	chr3	96557799	96557999	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023719)	promoter-TSS (NM_023719)	-58.0	NM_023719	56338.0	Mm.410189	NM_023719	ENSMUSG00000038393	Txnip	1200008J08Rik|AA682105|Hyplip1|THIF|Tbp-2|VDUP1	thioredoxin interacting protein	protein-coding	2.35220211121904	1.38976345385624	2.75505923830347	1.31881564633571	2.71371200565688	2.11121536734335	2.94515107524445	2.92723659900427	1.2589771773828	0.178689362275184	0.649334648917287
Merged-chr6-47786651-2	chr6	47786551	47786751	+	656.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17001.0	NR_030485	735289.0		NR_030485	ENSMUSG00000076060	Mir704	Mirn704|mir-704|mmu-mir-704	microRNA 704	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-93804246-3	chr1	93804126	93804326	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025454, intron 1 of 7)	CpG	261.0	NM_025454	66262.0	Mm.64065	NM_025454	ENSMUSG00000026283	Ing5	1700001C14Rik|1700027H23Rik|1810018M11Rik|AI225768	inhibitor of growth family, member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153147414-4	chr2	153147303	153147503	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001172117, intron 11 of 12)	intron (NM_001172117, intron 11 of 12)	-13898.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126660908-2	chr8	126660740	126660940	+	777.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(GA)n|Simple_repeat|Simple_repeat	-67404.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	-1.12007123334057	-1.23751541721827	-0.799610455274731	-1.25644006657821	-1.26447365240828	-1.23526386158843	-1.24555334641492	-1.25491236783429	-2.40709883940037	0.4691507995815	1
Merged-chr17-23700267-4	chr17	23700155	23700355	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-16229.0	NM_020293	56863.0	Mm.491368	NM_020293	ENSMUSG00000066720	Cldn9	nmf329	claudin 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-171329095-4	chr2	171328994	171329194	+	977.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	597287.0	NM_001163686	76829.0	Mm.41633	NM_029761	ENSMUSG00000027560	Dok5	2700055C10Rik	docking protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-17906926-2	chr17	17906826	17907026	+	684.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19102.0	NM_008039	14289.0	Mm.378918	NM_008039	ENSMUSG00000052270	Fpr2	E330010I07Rik|Fpr-rs2	formyl peptide receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45922422-4	chr7	45922302	45922502	+	838.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010129)	promoter-TSS (NM_010129)	-976.0	NM_010129	13732.0	Mm.20829	NM_010129	ENSMUSG00000040212	Emp3	H-4|H4|HNMP-1|MI-35|Ymp	epithelial membrane protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-104823329-3	chr13	104823238	104823438	+	724.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026075, intron 1 of 4)	intron (NM_026075, intron 1 of 4)	6168.0	NR_135272	67288.0	Mm.125465	NM_026075	ENSMUSG00000021716	Srek1ip1	3110031B13Rik|AI462702|AV348305|AW121048|Sfrs12ip1|Srsf12ip1	splicing regulatory glutamine/lysine-rich protein 1interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91347870-3	chr2	91347774	91347974	+	730.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175123, intron 3 of 8)	intron (NM_175123, intron 3 of 8)	82759.0	NM_023854	77038.0	Mm.43636	NM_023854	ENSMUSG00000027255	Arfgap2	2310032E02Rik|Zfp289	ADP-ribosylation factor GTPase activating protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-53566050-3	chr19	53565957	53566157	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	AmnSINE1|SINE|Deu	-34339.0	NM_007790	13006.0	Mm.14910	NM_007790	ENSMUSG00000024974	Smc3	Bamacan|Cspg6|HCAP|Mmip1|SMC-3|SmcD	structural maintenance of chromosomes 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69757574-3	chr11	69757448	69757648	+	686.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291068, intron 1 of 28)	intron (NM_001291068, intron 1 of 28)	1085.0	NM_001291068	20020.0	Mm.16533	NM_009089	ENSMUSG00000005198	Polr2a	220kDa|Rpb1|Rpo2-1	polymerase (RNA) II (DNA directed) polypeptide A	protein-coding	-0.314136912765767	-0.556520337219302	-0.559808190533426	-0.562334403273887	-0.565888595646824	-0.0766830106891312	-0.559084341415184	-0.269125509669662	1.60640572972033	0.549712913687748	1
Merged-chr19-45308150-4	chr19	45308028	45308228	+	982.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55606.0	NM_001360122	12234.0	Mm.119717	NM_009771	ENSMUSG00000025217	Btrc	Beta-Trcp1|E3RS-IkappaB|E3RSIkappaB|FWD1|Fbw1a|HOS|SCF b-TRCP|Slimb|b-TrCP|beta-TrCP	beta-transducin repeat containing protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-47359793-4	chr14	47359677	47359877	+	998.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6B|LTR|ERVK	-14083.0	NM_010705	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96502443-2	chr3	96502343	96502543	+	796.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22742.0	NM_027126	69585.0	Mm.171314	NM_027126	ENSMUSG00000038403	Hfe2	2310035L15Rik|5230400G09Rik|AI414844|AI789733|DL-M|HJV|Rgmc|hemojuvelin	hemochromatosis type 2 (juvenile)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-74437029-2	chr1	74436929	74437129	+	722.666626	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001310662, exon 24 of 24)	3' UTR (NM_001310662, exon 24 of 24)	27645.0	NM_009509	22349.0	Mm.471601	NM_009509	ENSMUSG00000026175	Vil1	Vil	villin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-3025851-2	chr9	3025752	3025952	+	967.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	GSAT_MM|Satellite|Satellite	12891.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-136116642-4	chr5	136116553	136116753	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011293)	promoter-TSS (NM_011293)	-38.0	NM_011293	20022.0	Mm.4896	NM_011293	ENSMUSG00000039771	Polr2j	14.5kDa|Polr2i|Rpb11a|Rpo2-4	polymerase (RNA) II (DNA directed) polypeptide J	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-105566636-2	chr5	105566537	105566737	+	936.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133897, intron 2 of 3)	intron (NM_133897, intron 2 of 3)	47166.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-10794794-4	chr8	10794688	10794888	+	870.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	87666.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-118538916-3	chr13	118538823	118539023	+	665.766663	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17245.0	NR_045982	75890.0	Mm.141235	NR_045982	ENSMUSG00000100727	1700003P14Rik	1700030O10Rik|4930584L06Rik	RIKEN cDNA 1700003P14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75158691-3	chr11	75158591	75158791	+	690.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001002764, intron 16 of 18)	(CA)n|Simple_repeat|Simple_repeat	9461.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-21941732-3	chr3	21941613	21941813	+	826.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-134939.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-51790263-3	chr17	51790170	51790370	+	839.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357637, intron 5 of 10)	intron (NM_001357637, intron 5 of 10)	21784.0	NM_001163630	20230.0	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-35446297-1	chr2	35446197	35446397	+	541.0	f1_balb.idr	intron (NM_010283, intron 1 of 8)	intron (NM_010283, intron 1 of 8)	15152.0	NM_001308299	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-74929068-3	chr15	74928963	74929163	+	798.755554	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25988.0	NM_001164039	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	3.57981756531346	3.16843524709434	3.33703019091027	3.59110236504547	3.10692034796235	2.95821529512487	3.18545309614823	2.14532814603279	-0.884072356797494	0.152658512771521	0.606640445713354
Merged-chr15-36666723-2	chr15	36666623	36666823	+	589.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57750.0	NM_008774	18458.0	Mm.371570	NM_008774	ENSMUSG00000022283	Pabpc1	PABP|Pabp1|PabpI|Pabpl1|ePAB	poly(A) binding protein, cytoplasmic 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100487514-3	chr7	100487416	100487616	+	957.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5842.0	NM_011671	22228.0	Mm.171378	NM_011671	ENSMUSG00000033685	Ucp2	Slc25a8|UCP 2|UCPH	uncoupling protein 2 (mitochondrial, proton carrier)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-60785269-2	chr18	60785169	60785369	+	782.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10673.0	NM_020600	20044.0	Mm.43778	NM_020600	ENSMUSG00000024608	Rps14	2600014J02Rik|AL023078	ribosomal protein S14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55657836-2	chr19	55657736	55657936	+	717.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045318, intron 2 of 3)	B4|SINE|B4	44368.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31001085-1	chr14	31000985	31001185	+	563.0	f0_balb.idr	promoter-TSS (NM_029626)	promoter-TSS (NM_029626)	-308.0	NM_001165930	76485.0	Mm.8766	NM_029626	ENSMUSG00000021916	Glt8d1	2410004H05Rik|5430414N14Rik|AI450005	glycosyltransferase 8 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-94358973-4	chr13	94358862	94359062	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009680)	promoter-TSS (NM_009680)	2.0	NM_009680	11774.0	Mm.21185	NM_009680	ENSMUSG00000021686	Ap3b1	AP-3|AU015684|C78395|Hps2|beta3A|pe|pearl|rim2	adaptor-related protein complex 3, beta 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116811837-4	chr11	116811719	116811919	+	980.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347633, intron 3 of 4)	intron (NM_001347633, intron 3 of 4)	16227.0	NM_026280	67622.0	Mm.64962	NM_026280	ENSMUSG00000020814	Mxra7	1810057P16Rik|E130302J09Rik	matrix-remodelling associated 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-163662875-4	chr2	163662766	163662966	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039390, intron 2 of 4)	B3|SINE|B2	4408.0	NM_001164053	18769.0	Mm.10091	NM_011106	ENSMUSG00000035268	Pkig	PKIgamma	protein kinase inhibitor, gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-93032850-3	chr5	93032762	93032962	+	820.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC3|LINE|L1	12160.0	NM_175270	78088.0	Mm.245085	NM_175270	ENSMUSG00000045314	Sowahb	5730467H21Rik|Ankrd56	sosondowah ankyrin repeat domain family member B	protein-coding	2.21735470150626	2.3335225531103	3.8467854483901	2.83533182830994	3.81024151970854	4.18987604282533	4.31357863029301	4.19197015485766	1.71353939337745	0.00350692879493383	0.0507757019488529
Merged-chr9-108304708-1	chr9	108304608	108304808	+	580.0	f1_c57bl6.idr	intron (NM_001311156, intron 2 of 2)	B1_Mus1|SINE|Alu	1451.0	NM_133986	102791.0	Mm.24670	NM_133986	ENSMUSG00000039461	Tcta	9130410M22Rik|AW553637|C85065|Tctal	T cell leukemia translocation altered gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46598117-1	chr19	46598017	46598217	+	1000.0	f1_balb.idr	promoter-TSS (NM_001177812)	promoter-TSS (NM_001177812)	-989.0	NM_001177812	226178.0	Mm.329895	NM_146099	ENSMUSG00000047731	Wbp1l	D19Wsu162e|Opal1	WW domain binding protein 1 like	protein-coding	0.42521712822478	0.473622590790998	0.458276810903079	1.66196929668088	0.4283830713238	0.477019336951996	1.82905285425305	1.16959300771431	0.779990230067634	0.809819481520801	0.998431161219273
Merged-chr6-115887025-4	chr6	115886866	115887066	+	636.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_031177, exon 9 of 29)	exon (NM_031177, exon 9 of 29)	33438.0	NM_031177	81896.0	Mm.333335	NM_031177	ENSMUSG00000030323	Ift122	C86139|Wdr10|sopb	intraflagellar transport 122	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-131843514-4	chr4	131843427	131843627	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025297)	promoter-TSS (NM_025297)	56.0	NM_025297	26922.0	Mm.192706	NM_025297	ENSMUSG00000028910	Mecr	AI195831|NRBF-1|Nrbf1	mitochondrial trans-2-enoyl-CoA reductase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-120126577-2	chr2	120126477	120126677	+	559.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_133838, intron 3 of 5)	intron (NM_133838, intron 3 of 5)	27998.0	NM_133838	98878.0	Mm.132226	NM_133838	ENSMUSG00000027293	Ehd4	2210022F10Rik|AI197390|AI846352|AV006278|Past2	EH-domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-17837833-2	chr5	17837733	17837933	+	673.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159558, intron 1 of 15)	intron (NM_001159558, intron 1 of 15)	-1937.0	NM_007643	12491.0	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 molecule	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-12409355-4	chr13	12409260	12409460	+	865.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144835, intron 14 of 44)	intron (NM_144835, intron 14 of 44)	13985.0	NM_144835	217995.0	Mm.171186	NM_144835	ENSMUSG00000050244	Heatr1	AA517551|B130016L12Rik|BC019693	HEAT repeat containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-30508595-4	chr3	30508515	30508715	+	806.625	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361034, intron 1 of 16)	CpG	1060.0	NM_001361034	14013.0	Mm.56965	NM_007963	ENSMUSG00000027684	Mecom	D630039M04Rik|Evi-1|Evi1|Jbo|Mds|Mds1|Mds1-Evi1|Prdm3|Znfpr1b1	MDS1 and EVI1 complex locus	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-81658243-4	chr12	81658145	81658345	+	835.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033149, intron 1 of 2)	intron (NM_001033149, intron 1 of 2)	26996.0	NM_001033149	69480.0	Mm.130002	NM_001033149	ENSMUSG00000042734	Ttc9	-	tetratricopeptide repeat domain 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127314052-2	chr10	127313952	127314152	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2266.0	NM_001171582	216443.0	Mm.28173	NM_001003913	ENSMUSG00000040354	Mars	Metrs|Mtrns	methionine-tRNA synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-20684775-2	chr14	20684675	20684875	+	727.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172596, intron 6 of 22)	intron (NM_172596, intron 6 of 22)	-5860.0	NR_105911	102465571.0		NR_105911	ENSMUSG00000098602	Mir6946	Gm27799|mmu-mir-6946	microRNA 6946	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-99099800-4	chr14	99099692	99099892	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028315)	promoter-TSS (NM_028315)	-22.0	NR_153390	72662.0	Mm.163339	NM_028315	ENSMUSG00000033166	Dis3	2810028N01Rik	DIS3 homolog, exosome endoribonuclease and 3'-5' exoribonuclease	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-129746885-3	chr7	129746804	129747004	+	858.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER44C|DNA|TcMar-Tigger	155041.0	NM_172255	207425.0	Mm.229323	NM_172255	ENSMUSG00000042055	Wdr11	2900055P10Rik|AW489876|Brwd2|mKIAA1351	WD repeat domain 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88526410-4	chr3	88526306	88526506	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5989.0	NM_001029890	72640.0	Mm.275154	NM_001029890	ENSMUSG00000074480	Mex3a	2700083E18Rik|Gm411|Rkhd4	mex3 RNA binding family member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-12677716-4	chr8	12677604	12677804	+	796.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5604.0	NM_198031	259279.0	Mm.142095	NM_198031	ENSMUSG00000000759	Tubgcp3	GCP3|Spc98p	tubulin, gamma complex associated protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44867264-2	chr7	44867164	44867364	+	748.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_133949, exon 3 of 12)	exon (NM_133949, exon 3 of 12)	2524.0	NM_133949	84113.0	Mm.42855	NM_133949	ENSMUSG00000038502	Ptov1	1110030G05Rik|AU041779|Gcap3	prostate tumor over expressed gene 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-99903056-4	chr12	99902961	99903161	+	976.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028354, intron 6 of 15)	intron (NM_028354, intron 6 of 15)	18546.0	NM_028354	104884.0	Mm.312323	NM_028354	ENSMUSG00000021177	Tdp1	2810481F14Rik|4921509N21Rik|AI838772|AW493413|E430034L06Rik|MLZ-501|SCAN1	tyrosyl-DNA phosphodiesterase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-32615335-4	chr4	32615228	32615428	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001122978)	promoter-TSS (NM_001122978)	-142.0	NM_001122978	26885.0	Mm.22279	NM_011997	ENSMUSG00000028282	Casp8ap2	D4Ertd659e|FLASH	caspase 8 associated protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-65332117-4	chr14	65332021	65332221	+	874.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26555.0	NM_199029	380912.0	Mm.270087	NM_199029	ENSMUSG00000034522	Zfp395	BC053701|Gm910	zinc finger protein 395	protein-coding	1.81191942032233	1.93713162346781	1.03950608235017	1.02371932381315	1.3573924285047	2.06691079126691	1.76050704834743	1.92669492348733	0.830287490011084	0.484039874942595	0.931207887927275
Merged-chr7-75633137-3	chr7	75633041	75633241	+	849.133301	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 8 of 36)	Lx9|LINE|L1	177607.0	NM_029332	75547.0	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	1.83118779644399	1.37898530565928	2.68152741381247	1.92706647959545	2.71049715522589	2.60111859859656	1.99692453506932	2.6189077564175	1.04791915970304	0.249227799568348	0.747698903845194
Merged-chr7-113514440-2	chr7	113514340	113514540	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360668, intron 1 of 12)	intron (NM_001360668, intron 1 of 12)	606.0	NM_001360669	67420.0	Mm.206919	NM_026143	ENSMUSG00000030759	Far1	2600011M19Rik|2900034E22Rik|3732409C05Rik|AI850429|Mlstd2	fatty acyl CoA reductase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25221369-4	chr7	25221288	25221488	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175436)	promoter-TSS (NM_175436)	-37.0	NM_175436	210172.0	Mm.129371	NM_175436	ENSMUSG00000046541	Zfp526	D030024H03Rik|Znf526	zinc finger protein 526	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-92869847-4	chr16	92869755	92869955	+	869.9250490000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43781.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71542215-3	chr8	71542109	71542309	+	929.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028617)	promoter-TSS (NM_028617)	-721.0	NM_028617	73711.0	Mm.307770	NM_028617	ENSMUSG00000031813	Mvb12a	1110012M11Rik|Fam125a	multivesicular body subunit 12A	protein-coding	-1.17367364971587	-1.14665061133654	-1.15856004380685	-1.16834280623128	-1.17310571790619	-1.14406978763884	-0.42938571406771	-1.16659169643457	2.89727187181404	0.396361616615464	1
Merged-chr9-61947542-2	chr9	61947442	61947642	+	837.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024245)	promoter-TSS (NM_024245)	-743.0	NM_024245	71819.0	Mm.259374	NM_024245	ENSMUSG00000032254	Kif23	3110001D19Rik|C87313|CHO1|Knsl5|MKLP-1|MKLP1	kinesin family member 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-21488784-3	chr5	21488686	21488886	+	762.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199632, intron 19 of 20)	HAL1|LINE|L1	-54741.0	NM_028977	74511.0	Mm.439963	NM_028977	ENSMUSG00000039883	Lrrc17	37kDa|4833425M04Rik|6130400C22Rik|P37nb	leucine rich repeat containing 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-8980496-2	chr3	8980396	8980596	+	969.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	-16350.0	NM_001025261	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	-0.216923942352336	-0.203413151673663	-0.207849323378476	0.308729813402105	0.0487213513516356	-0.202411836096397	0.358133647096361	-0.210669023979372	0.640515220126531	0.790381882738714	1
Merged-chr3-58691447-4	chr3	58691367	58691567	+	966.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009174, exon 1 of 2)	exon (NM_009174, exon 1 of 2)	921.0	NM_009174	20439.0	Mm.2847	NM_009174	ENSMUSG00000036432	Siah2	AA415433|Sinh2	siah E3 ubiquitin protein ligase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141560160-4	chr4	141560057	141560257	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13995.0	NR_030695	320456.0	Mm.32859	NM_177163		B330016D10Rik	-	RIKEN cDNA B330016D10 gene	ncRNA	5.79001321438981	4.85450996825525	6.29039591115223	5.86657947471038	5.89704092887845	5.29344067715432	5.61971116875015	6.2572063259012	0.0261789297848925	0.933424610954087	0.998431161219273
Merged-chr9-78024987-2	chr9	78024887	78025087	+	624.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26971.0	NM_008103	14531.0	Mm.1400	NM_008103	ENSMUSG00000023333	Gcm1	GCMa|Gcm-rs2|Gcm1-rs1|glide	glial cells missing homolog 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4301951-3	chr19	4301850	4302050	+	866.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290818, intron 1 of 20)	intron (NM_001290818, intron 1 of 20)	4272.0	NM_130863	110355.0	Mm.254144	NM_130863	ENSMUSG00000024858	Grk2	Adrbk-1|Adrbk1|Bark-1|beta ARK|betaARK1	G protein-coupled receptor kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-109229359-3	chr13	109229283	109229483	+	828.305542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011056, intron 3 of 16)	intron (NM_011056, intron 3 of 16)	-95361.0	NR_030644	100124489.0		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-24166641-3	chr19	24166536	24166736	+	973.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011597, intron 1 of 22)	intron (NM_011597, intron 1 of 22)	7553.0	NM_001198985	21873.0	Mm.104744	NM_011597	ENSMUSG00000024812	Tjp2	ZO-2	tight junction protein 2	protein-coding	4.05449910154766	3.96237084505906	3.07626311796624	3.62208281677606	1.4993316038942	1.41507682838706	2.33542227331633	1.29846984864503	-3.99664282146969	3.79047559079483e-06	0.000202424893790904
Merged-chr17-81580622-4	chr17	81580530	81580730	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 2 of 8)	intron (NR_104580, intron 2 of 8)	157757.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-73355537-1	chr8	73355437	73355637	+	555.0	f1_c57bl6.idr	Intergenic	Intergenic	-1997.0	NM_010687	16795.0	Mm.324371	NM_010687	ENSMUSG00000004383	Large1	BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd	LARGE xylosyl- and glucuronyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-61919886-2	chr8	61919786	61919986	+	869.6666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8201.0	NM_001293783	234311.0	Mm.275233	NM_144928	ENSMUSG00000037921	Ddx60	9830118M07	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-118242428-2	chr7	118242328	118242528	+	700.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001031814, intron 1 of 62)	intron (NM_001031814, intron 1 of 62)	1209.0	NM_001031814	233789.0	Mm.309053	NM_177180	ENSMUSG00000030655	Smg1	2610207I05Rik|5430435M13Rik|C130002K18Rik|mKIAA0421	SMG1 homolog, phosphatidylinositol 3-kinase-related kinase (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-75199840-2	chr16	75199740	75199940	+	547.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-107070.0	NM_001358492	268902.0	Mm.171736	NM_175549	ENSMUSG00000052516	Robo2	2600013A04Rik|9430089E08Rik|BB097918|D230004I22Rik|mKIAA1568	roundabout guidance receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126937121-2	chr8	126937021	126937221	+	631.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_024214, exon 4 of 5)	exon (NM_024214, exon 4 of 5)	8800.0	NM_024214	67952.0	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-94571111-9	chr16	94571086	94571286	+	978.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113389, intron 1 of 11)	intron (NM_001113389, intron 1 of 11)	279.0	NM_001113389	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-37658204-4	chr13	37658108	37658308	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20A4|LTR|ERVK	-167830.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-24958722-2	chr19	24958633	24958833	+	934.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146097, intron 1 of 14)	intron (NM_146097, intron 1 of 14)	2883.0	NR_033744	226043.0	Mm.272127	NM_146097	ENSMUSG00000024878	Cbwd1	AV349248|BC018472	COBW domain containing 1	protein-coding	3.72237690717314	1.63066825395444	3.1915891963735	3.26554311533511	3.39122144507039	1.64374266992685	3.21710805990302	3.73098867343769	0.0708537354616691	0.93032773764233	0.998431161219273
Merged-chr17-70966240-4	chr17	70966069	70966269	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24347.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43966232-4	chr4	43966094	43966294	+	720.541687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027450, intron 1 of 4)	intron (NM_027450, intron 1 of 4)	8492.0	NM_027450	384009.0	Mm.22213	NM_027450	ENSMUSG00000028480	Glipr2	5730414A08Rik|C77180|GAPR-1	GLI pathogenesis-related 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-50691015-4	chr16	50690912	50691112	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-36120.0	NR_105782	102466634.0		NR_105782	ENSMUSG00000098482	Mir6363	Gm28026|mmu-mir-6363	microRNA 6363	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-135633664-4	chr1	135633556	135633756	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35880.0	NR_151586	215714.0	Mm.472859	NM_175447		Gm4793	EG215714	predicted gene 4793	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-33961677-2	chr17	33961577	33961777	+	680.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001357330, exon 12 of 20)	exon (NM_001357330, exon 12 of 20)	5587.0	NM_001357329	224705.0	Mm.448614	NM_172620	ENSMUSG00000024319	Vps52	ARE1|D130068D18|D430041K17Rik|SAC2|Sacm2l|tclw5	VPS52 GARP complex subunit	protein-coding	0.868181774585527	0.949360797478594	1.21358650418575	0.729418750583691	1.12302888274457	1.2709386701988	1.22402517215891	1.39760518095142	1.49130471819024	0.274925077319076	0.779421101386951
Merged-chr19-3699943-3	chr19	3699848	3700048	+	842.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-8345.0	NM_001358256	72056.0	Mm.23780	NM_028077	ENSMUSG00000035372	1810055G02Rik	AI256204	RIKEN cDNA 1810055G02 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111559830-4	chr12	111559717	111559917	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4c|LINE|L1	14585.0	NR_045295	100504687.0	Mm.26072	NR_045295	ENSMUSG00000096995	2810029C07Rik	AU017849	RIKEN cDNA 2810029C07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153225267-6	chr2	153225180	153225380	+	945.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_198617, exon 1 of 1)	exon (NM_198617, exon 1 of 1)	161.0	NM_198617	241732.0	Mm.277243	NM_198617	ENSMUSG00000074671	Tspyl3	AW212607|Gm36	TSPY-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127448742-4	chr7	127448621	127448821	+	988.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175163, exon 1 of 3)	exon (NM_175163, exon 1 of 3)	437.0	NM_175163	71131.0	Mm.474533	NM_175163	ENSMUSG00000048921	Zfp689	4933416E05Rik|Znf689	zinc finger protein 689	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-105810587-1	chr5	105810487	105810687	+	569.0	f1_balb.idr	intron (NM_001122768, intron 2 of 2)	intron (NM_001122768, intron 2 of 2)	-65981.0	NR_030777	54367.0	Mm.248876	NM_018759	ENSMUSG00000029290	Zfp326	5730470H14Rik|ZAN75|Znf326	zinc finger protein 326	protein-coding	0.156217364887998	-0.547037347210758	-0.55077432331031	-0.553654979699414	-0.173984393701191	-0.546194477038679	-0.549950421254275	-0.553151896539172	-1.15001598641118	0.684374878108946	1
Merged-chr17-32891347-3	chr17	32891246	32891446	+	938.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207245, intron 1 of 3)	intron (NM_207245, intron 1 of 3)	257.0	NM_207245	240066.0	Mm.26636	NM_207245	ENSMUSG00000095325	Zfp870	AI173952	zinc finger protein 870	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-103982421-2	chr2	103982312	103982512	+	610.0	f0_balb.idr|f0_c57.idr	TTS (NM_001142337)	TTS (NM_001142337)	12125.0	NM_001142335	16909.0	Mm.29266	NM_008505	ENSMUSG00000032698	Lmo2	Rbtn-2|Rbtn2|Rhom-2|Ttg2	LIM domain only 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-45708414-4	chr17	45708307	45708507	+	738.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22058.0	NM_026732	68463.0	Mm.379158	NM_026732	ENSMUSG00000023939	Mrpl14	1110006I11Rik|AI846816|MRP-L32|Rpml32	mitochondrial ribosomal protein L14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-99206220-3	chr6	99206147	99206347	+	684.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001197321, intron 2 of 17)	intron (NM_001197321, intron 2 of 17)	60268.0	NM_001197321	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-99073956-4	chr11	99073823	99074023	+	980.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172564, exon 7 of 13)	exon (NM_172564, exon 7 of 13)	15383.0	NM_172564	217169.0	Mm.262067	NM_172564	ENSMUSG00000017607	Tns4	9930017A07Rik|AA589547|AU016405|Cten	tensin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-64754585-4	chr17	64754465	64754665	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008549, exon 22 of 22)	3' UTR (NM_008549, exon 22 of 22)	-12546.0	NR_105051	101202683.0	Mm.393309	NR_105051		Dreh	-	down-regulated in hepatocellular carcinoma	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-23383912-2	chr1	23383812	23384012	+	675.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081079)	promoter-TSS (NM_001081079)	-737.0	NM_001081079	70155.0	Mm.28013	NM_001081079	ENSMUSG00000026158	Ogfrl1	2210417C17Rik	opioid growth factor receptor-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81481631-2	chr10	81481531	81481731	+	626.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_176954, intron 1 of 11)	intron (NM_176954, intron 1 of 11)	1078.0	NM_176954	319586.0	Mm.152689	NM_176954	ENSMUSG00000034818	Celf5	4930565A21Rik|Brunol5	CUGBP, Elav-like family member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-138080494-2	chr1	138080394	138080594	+	792.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001268286, intron 20 of 28)	(CA)n|Simple_repeat|Simple_repeat	94632.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-133755129-3	chr3	133755019	133755219	+	964.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-210729.0	NM_001346736	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-99640352-4	chr12	99640198	99640398	+	918.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12324.0	NR_045288	73457.0	Mm.383439	NR_045288	ENSMUSG00000100211	1700064M15Rik	-	RIKEN cDNA 1700064M15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-34660264-4	chr5	34660154	34660354	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029278)	promoter-TSS (NM_029278)	-106.0	NM_029278	75416.0	Mm.40292	NM_029278	ENSMUSG00000036693	Nop14	2610033H07Rik|Nol14	NOP14 nucleolar protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114730679-2	chr11	114730579	114730779	+	567.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001034878, intron 1 of 12)	B3|SINE|B2	3267.0	NM_001034878	432611.0	Mm.212764	NM_001034878	ENSMUSG00000034706	Dnaic2	C030015H18Rik|Dnai2|Gm728|b2b3405Clo	dynein, axonemal, intermediate chain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-86772204-4	chr12	86772088	86772288	+	886.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37819.0	NM_001195767	627607.0	Mm.341880	NM_001195767	ENSMUSG00000059114	Lrrc74a	EG627607|Gm6772|Lrrc74	leucine rich repeat containing 74A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-80693018-4	chr17	80692917	80693117	+	907.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360278, intron 1 of 33)	intron (NM_001360278, intron 1 of 33)	35008.0	NM_001360278	225028.0	Mm.311948	NM_001081357	ENSMUSG00000024242	Map4k3	4833416M01Rik|4833416M07Rik|9530052P13Rik|Glk|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1	mitogen-activated protein kinase kinase kinase kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-93205446-4	chr5	93205347	93205547	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017367, intron 1 of 6)	intron (NM_017367, intron 1 of 6)	1048.0	NM_017367	12453.0	Mm.250419	NM_017367	ENSMUSG00000063015	Ccni	-	cyclin I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-97212769-4	chr15	97212686	97212886	+	959.2708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34321.0	NM_172293	239647.0	Mm.130036	NM_172293	ENSMUSG00000044250	Pced1b	Fam113b	PC-esterase domain containing 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-38373895-2	chr3	38373795	38373995	+	863.6666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	110921.0	NM_001167883	99696.0	Mm.290937	NM_001033198	ENSMUSG00000044864	Ankrd50	AI662170|E430012K20Rik|mKIAA1223|mKIAA3019	ankyrin repeat domain 50	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-98367580-4	chr4	98367497	98367697	+	822.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053157, intron 4 of 6)	Lx|LINE|L1	15668.0	NM_053157	94043.0	Mm.331719	NM_053157	ENSMUSG00000028563	Tm2d1	2310026L18Rik|AA990549|Bbp	TM2 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-32346480-2	chr11	32346380	32346580	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1331.0	NM_177364	268396.0	Mm.227616	NM_177364	ENSMUSG00000040711	Sh3pxd2b	G431001E03Rik|TSK4|fad49	SH3 and PX domains 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70845718-2	chr11	70845618	70845818	+	670.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291141, intron 1 of 16)	intron (NM_001291141, intron 1 of 16)	957.0	NM_001291142	54189.0	Mm.7087	NM_019400	ENSMUSG00000020817	Rabep1	Rab5ep|rabaptin-5|rabaptin-5alpha	rabaptin, RAB GTPase binding effector protein 1	protein-coding	-1.27480050717774	-0.604729833679879	-1.25573295904267	-1.26493563944758	-1.27428069156472	-1.24210192204986	-1.25319678955844	-1.26328836405502	-2.6632876257018	0.439827081912762	1
Merged-chr1-88562575-4	chr1	88562464	88562664	+	981.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_037971)	TTS (NR_037971)	11047.0	NR_037971	100503197.0	Mm.99352	NR_037971	ENSMUSG00000100798	Gm19589	-	predicted gene, 19589	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101303039-2	chr11	101302939	101303139	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019584)	promoter-TSS (NM_019584)	-753.0	NM_001359821	56208.0	Mm.178947	NM_019584	ENSMUSG00000035086	Becn1	Atg6	beclin 1, autophagy related	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-21032317-4	chr14	21032200	21032400	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009502, exon 21 of 21)	3' UTR (NM_009502, exon 21 of 21)	20142.0	NM_018829	55946.0	Mm.376269	NM_018829	ENSMUSG00000021824	Ap3m1	1200013D09Rik|C78982|R75378	adaptor-related protein complex 3, mu 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-29371501-2	chr17	29371385	29371585	+	558.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_001159538, intron 9 of 15)	intron (NM_001159538, intron 9 of 15)	10571.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	3.35112423418216	3.6847110063213	3.285513580924	2.17508707808029	4.82565245853637	3.20343381492144	4.06301377985482	3.30198174900595	1.17122871698896	0.0580128632325597	0.356207967075077
Merged-chr11-74829260-2	chr11	74829160	74829360	+	847.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1664.0	NM_010813	17428.0	Mm.3759	NM_010813	ENSMUSG00000000282	Mnt	Rox|bHLHd3	max binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-20878659-2	chr2	20878559	20878759	+	656.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001128084, intron 8 of 24)	intron (NM_001128084, intron 8 of 24)	89062.0	NM_001081364	71435.0	Mm.28507	NM_001081364	ENSMUSG00000036591	Arhgap21	5530401C11Rik|AA416458|ARHGAP10	Rho GTPase activating protein 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44180446-2	chr9	44180346	44180546	+	579.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007619, intron 2 of 15)	intron (NM_007619, intron 2 of 15)	45788.0	NM_001359530	84004.0	Mm.275003	NM_023061	ENSMUSG00000032135	Mcam	1-gicerin|AV025631|CD146|CD149|Muc18|s-endo|s-gicerin	melanoma cell adhesion molecule	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-53241435-2	chr15	53241335	53241535	+	803.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	104748.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-19712458-2	chr10	19712358	19712558	+	735.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172786)	promoter-TSS (NM_172786)	-129.0	NM_172786	237313.0	Mm.234667	NM_172786	ENSMUSG00000020007	Il20ra	E230031K19	interleukin 20 receptor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106609516-2	chr11	106609416	106609616	+	862.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_198292, intron 1 of 11)	intron (NM_198292, intron 1 of 11)	3414.0	NM_198292	21763.0	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-79030514-6	chr8	79030330	79030530	+	916.1203609999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001294279, intron 1 of 14)	CpG	1993.0	NM_178267	622675.0	Mm.48724	NM_178267	ENSMUSG00000071064	Zfp827	2810449M09Rik|D630040G17Rik|Znf827	zinc finger protein 827	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-23274658-3	chr16	23274445	23274645	+	771.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252505, intron 2 of 7)	intron (NM_001252505, intron 2 of 7)	-15925.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-19094065-1	chr10	19093965	19094165	+	601.0	f0_balb.idr	Intergenic	RSINE1|SINE|B4	-47684.0	NR_038021	100504265.0	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	0.450918089690228	0.324133929610958	0.316770186923469	0.481887327714916	0.893649214648028	1.07698052143122	0.318396995062205	0.757383733711696	2.76846343618863	0.131466446196305	1
Merged-chr17-86915353-2	chr17	86915253	86915453	+	715.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1995.0	NM_001277980	78469.0	Mm.67234	NM_030104	ENSMUSG00000037689	Tmem247	1700090G07Rik	transmembrane protein 247	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120589270-4	chr8	120589187	120589387	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178856)	promoter-TSS (NM_178856)	-212.0	NM_178856	272551.0	Mm.275910	NM_178856	ENSMUSG00000031821	Gins2	2210013I18Rik|4833427B12Rik|AI323585|Pfs2	GINS complex subunit 2 (Psf2 homolog)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-4261766-2	chr8	4261666	4261866	+	634.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011592, intron 11 of 12)	B1F|SINE|Alu	-2492.0	NM_183315	330695.0	Mm.34210	NM_183315	ENSMUSG00000048644	Ctxn1	BC028881|Ctxn	cortexin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-23141616-3	chr19	23141521	23141721	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010638, exon 1 of 2)	5' UTR (NM_010638, exon 1 of 2)	395.0	NM_010638	16601.0	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|Gm9971	Kruppel-like factor 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-40436083-4	chr6	40436027	40436227	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356375)	promoter-TSS (NM_001356375)	8.0	NM_001356375	243780.0	Mm.333006	NM_175528	ENSMUSG00000037172	E330009J07Rik	AI841796|Lchn|mKIAA1147	RIKEN cDNA E330009J07 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-113546014-2	chr13	113545914	113546114	+	715.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M3|LINE|L1	-43170.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-120925837-4	chr4	120925660	120925860	+	992.9285890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001160043)	promoter-TSS (NM_001160043)	-755.0	NM_001160043	73172.0	Mm.151436	NM_028457	ENSMUSG00000028629	Exo5	3110037I16Rik|AV297100|Dem1|Exo V|mExo5	exonuclease 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-70004360-2	chr10	70004260	70004460	+	566.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_170729, intron 38 of 40)	B2_Mm2|SINE|B2	78828.0	NM_009670	11735.0	Mm.235960	NM_009670	ENSMUSG00000069601	Ank3	2900054D09Rik|AI314020|Ank-3|AnkG|Ankyrin-3|Ankyrin-G	ankyrin 3, epithelial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-8855427-2	chr4	8855327	8855527	+	666.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_001277149, exon 31 of 38)	exon (NM_001277149, exon 31 of 38)	104103.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-55850956-4	chr7	55850875	55851075	+	898.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011370, intron 1 of 30)	intron (NM_011370, intron 1 of 30)	8904.0	NM_001164661	20430.0	Mm.37249	NM_011370	ENSMUSG00000030447	Cyfip1	E030028J09Rik|P140SRA-1|P140sra1|Shyc|Sra-1|Sra1|l(7)1Rl|l71Rl|l7Rl1|mKIAA0068|pl-1	cytoplasmic FMR1 interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-110099771-2	chr5	110099671	110099871	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207279)	promoter-TSS (NM_207279)	-198.0	NM_207279	403178.0	Mm.297057	NM_207279	ENSMUSG00000064247	Plcxd1	A330045H12Rik|Gm576	phosphatidylinositol-specific phospholipase C, X domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-119745950-1	chr3	119745850	119746050	+	755.0	f0_balb.idr	intron (NM_001310711, intron 7 of 13)	intron (NM_001310711, intron 7 of 13)	37438.0	NM_001310711	56195.0	Mm.29966	NM_019550	ENSMUSG00000028134	Ptbp2	Ptb2|brPTB|nPTB	polypyrimidine tract binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114886357-2	chr11	114886257	114886457	+	680.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3684.0	NM_001347654	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-84103649-2	chr18	84103549	84103749	+	644.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15491.0	NM_146090	225791.0	Mm.147052	NM_146090	ENSMUSG00000049090	Zadh2	C530046K17Rik|PTGR-3|Pthr3	zinc binding alcohol dehydrogenase, domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78304029-3	chr15	78303929	78304129	+	944.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001287389, intron 1 of 11)	intron (NM_001287389, intron 1 of 11)	1692.0	NM_007781	12984.0	Mm.1940	NM_007781	ENSMUSG00000071714	Csf2rb2	AIC2A|BetaIl3|Bil3|Csfgmrb|Il3r|Il3rb|Il3rb2	colony stimulating factor 2 receptor, beta 2, low-affinity (granulocyte-macrophage)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-120935972-1	chr4	120935872	120936072	+	826.0	f0_balb.idr	intron (NM_001005788, intron 3 of 5)	intron (NM_001005788, intron 3 of 5)	-10967.0	NM_001160043	73172.0	Mm.151436	NM_028457	ENSMUSG00000028629	Exo5	3110037I16Rik|AV297100|Dem1|Exo V|mExo5	exonuclease 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-13034089-2	chr7	13033989	13034189	+	810.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_153796, intron 1 of 3)	intron (NR_153796, intron 1 of 3)	688.0	NM_001360733	68953.0	Mm.295670	NM_026885	ENSMUSG00000033916	Chmp2a	1500016L11Rik|mVps2	charged multivesicular body protein 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-59162723-2	chr11	59162677	59162877	+	761.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001270791, intron 1 of 1)	intron (NM_001270791, intron 1 of 1)	968.0	NM_001270791	216792.0	Mm.266175	NM_173785	ENSMUSG00000049287	Iba57	4930543L23Rik|A230051G13Rik|C1orf69	IBA57 homolog, iron-sulfur cluster assembly	protein-coding	0.666347330630041	1.05330912424688	0.396143131443407	1.23524495599613	0.380357489458008	0.616283502782591	0.397998302164962	0.720522263067365	-2.06110262090775	0.236854492192675	1
Merged-chr14-65347069-3	chr14	65346938	65347138	+	886.0944210000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11638.0	NM_199029	380912.0	Mm.270087	NM_199029	ENSMUSG00000034522	Zfp395	BC053701|Gm910	zinc finger protein 395	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4202435-2	chr19	4202335	4202535	+	707.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011237)	promoter-TSS (NM_011237)	-832.0	NM_011237	19367.0	Mm.277629	NM_011237	ENSMUSG00000024824	Rad9a	Rad9	RAD9 checkpoint clamp component A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-32127535-2	chr12	32127435	32127635	+	587.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66256.0	NM_011158	19088.0	Mm.25594	NM_011158	ENSMUSG00000002997	Prkar2b	AI451071|AW061005|PKARIIbeta|Pkarb2|RII(beta)	protein kinase, cAMP dependent regulatory, type II beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-69706076-4	chr9	69705967	69706167	+	974.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54873.0	NM_022378	64290.0	Mm.440890	NM_022378	ENSMUSG00000059246	Foxb1	C43|Fkh5|Foxb1a|Foxb1b|Hfh-e5.1|Mf3|Twh	forkhead box B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167947535-2	chr2	167947435	167947635	+	860.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011201, intron 1 of 8)	intron (NM_011201, intron 1 of 8)	15208.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-99200895-3	chr11	99200781	99200981	+	866.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30136.0	NM_020618	57376.0	Mm.379086	NM_020618	ENSMUSG00000037935	Smarce1	2810417B20Rik|5830412H02Rik|9030408N19Rik|Baf27	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-23452699-2	chr16	23452599	23452799	+	638.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008555, intron 15 of 15)	intron (NM_008555, intron 15 of 15)	23566.0	NM_001004151	239766.0	Mm.208751	NM_001004151	ENSMUSG00000033383	Rtp1	Gm1766|Gm604	receptor transporter protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-81022198-7	chr5	81022128	81022328	+	888.4761960000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198702, intron 1 of 27)	intron (NM_198702, intron 1 of 27)	635.0	NM_198702	319387.0	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	2.73759161227749	1.59288245050276	1.54222585273386	2.17068456661908	2.55017965904759	2.33709891912661	1.28535516017611	3.08546749123948	0.75738468110718	0.444052510216004	0.912265842646861
Merged-chr2-150218104-6	chr2	150217996	150218196	+	815.80835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001142411)	promoter-TSS (NM_001142411)	-3.0	NM_001142411	245174.0	Mm.378428	NM_001142411	ENSMUSG00000060336	Zfp937	EG245174|Gm4979|ZIPO-I	zinc finger protein 937	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-78158147-2	chr10	78158047	78158247	+	789.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC|LINE|L1	11621.0	NM_138601	28295.0	Mm.268691	NM_138601	ENSMUSG00000053329	D10Jhu81e	C21orf33|ES1	DNA segment, Chr 10, Johns Hopkins University 81 expressed	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-98525455-3	chr6	98525369	98525569	+	820.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-182715.0	NM_001128092	330390.0	Mm.484161	NM_001128092	ENSMUSG00000090667	Gm765	-	predicted gene 765	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-88676218-4	chr5	88676087	88676287	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178700)	promoter-TSS (NM_178700)	-16.0	NM_178700	231413.0	Mm.332474	NM_178700	ENSMUSG00000044221	Grsf1	BB232551|C80280|D5Wsu31e	G-rich RNA sequence binding factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35167296-2	chr17	35167196	35167396	+	552.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2419.0	NM_020027	53761.0	Mm.272462	NM_020027	ENSMUSG00000024393	Prrc2a	3110039B05Rik|Bat-2|Bat2|D17H6S51E|G2|Wbp12|mKIAA4178	proline-rich coiled-coil 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-117160639-2	chr5	117160551	117160751	+	618.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081308, intron 1 of 19)	intron (NM_001081308, intron 1 of 19)	27063.0	NM_183306	330177.0	Mm.24343	NM_183306	ENSMUSG00000061288	Taok3	2900006A08Rik|A130052D22|A430105I05Rik	TAO kinase 3	protein-coding	0.67080801023352	0.732042433940701	0.712727306975982	2.01434332887931	1.21699687265815	0.736306897664306	1.49322304244914	2.16855736759155	0.948296194018985	0.528772978403817	0.949448996541304
Merged-chr13-48842013-1	chr13	48841913	48842113	+	674.0	f0_balb.idr	intron (NM_011078, intron 1 of 21)	intron (NM_011078, intron 1 of 21)	28872.0	NM_011078	18676.0	Mm.486213	NM_011078	ENSMUSG00000038025	Phf2	GRC5	PHD finger protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122689056-3	chr5	122688955	122689155	+	781.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038845, intron 12 of 12)	MT2B1|LTR|ERVL	6458.0	NR_106195	102465902.0		NR_106195	ENSMUSG00000099324	Mir8115	Gm28012|mmu-mir-8115	microRNA 8115	ncRNA	0.801008131553364	0.358685107301318	0.352098699231986	0.347019896805757	0.811181926923716	0.712037474231049	0.918777784516394	0.510343442521571	1.70319572436926	0.340378364720788	1
Merged-chr2-164493696-4	chr2	164493550	164493750	+	968.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_026797)	TTS (NM_026797)	-3875.0	NM_133779	78928.0	Mm.28228	NM_133779	ENSMUSG00000017721	Pigt	2510012P17Rik|4930534E15Rik|CGI-06|NDAP|Ndap7	phosphatidylinositol glycan anchor biosynthesis, class T	protein-coding	3.29734806307888	4.11778056400492	3.29278026272978	2.64888543295475	4.04321483438593	4.3365221097594	5.16777539158131	4.33473736623483	1.50938526847337	0.00308607183243163	0.0463219639435129
Merged-chr14-100968870-1	chr14	100968770	100968970	+	591.0	f0_balb.idr	Intergenic	Intergenic	231199.0	NM_029680	76627.0	Mm.31415	NM_029680	ENSMUSG00000042888	Prr30	1700110M21Rik	proline rich 30	protein-coding	-0.27806229094759	-0.259160530498018	-0.265289927243564	-0.270060252045535	0.272049477965571	0.763521454469693	-0.263932916513996	-0.269224234580206	4.02188009496215	0.0954124978098285	1
Merged-chr11-117883121-3	chr11	117883014	117883214	+	817.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9588.0	NM_027919	71776.0	Mm.3200	NM_027919	ENSMUSG00000017713	Tha1	1300017K07Rik|GLY1	threonine aldolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-113812134-2	chr9	113812034	113812234	+	717.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286602)	promoter-TSS (NM_001286602)	-452.0	NM_001286601	76499.0	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-52954715-2	chr6	52954615	52954815	+	807.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_173406, intron 1 of 4)	intron (NM_173406, intron 1 of 4)	-45095.0	NM_001168277	231986.0	Mm.386865	NM_173406	ENSMUSG00000063568	Jazf1	AI591476|C820002C15|Jaz1|Tip27	JAZF zinc finger 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-79180940-2	chr3	79180840	79181040	+	668.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31979.0	NR_045502	70924.0	Mm.444622	NR_045502	ENSMUSG00000104585	4921511C10Rik	-	RIKEN cDNA 4921511C10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-110480179-1	chr11	110480079	110480279	+	554.0	f1_balb.idr	intron (NM_001356346, intron 1 of 11)	intron (NM_001356346, intron 1 of 11)	839.0	NM_001356346	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	-0.389544122879142	-0.733057309928974	-0.73590401799517	-0.738089381508937	-0.604299489667623	-0.732413427235573	-0.735277527352155	-0.331507620530693	0.609895282131337	0.828030841379242	1
Merged-chr7-145279790-2	chr7	145279690	145279890	+	653.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_132643, intron 2 of 22)	intron (NR_132643, intron 2 of 22)	4221.0	NR_132644	233979.0	Mm.102235	NM_146206	ENSMUSG00000048677	Tpcn2	D830047E22Rik|Gm35086	two pore segment channel 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-63938829-4	chr5	63938701	63938901	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145923, intron 1 of 6)	intron (NM_145923, intron 1 of 6)	30096.0	NM_145923	100532.0	Mm.243632	NM_145923	ENSMUSG00000047881	Rell1	AA536743	RELT-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44952943-4	chr7	44952831	44953031	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077591, intron 6 of 10)	intron (NM_001077591, intron 6 of 10)	9691.0	NM_011651	22116.0	Mm.84502	NM_011651	ENSMUSG00000059891	Tsks	Stk22s1|Tssks1	testis-specific serine kinase substrate	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3923815-3	chr19	3923696	3923896	+	842.7666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026316, exon 2 of 10)	exon (NM_026316, exon 2 of 10)	5920.0	NM_026316	67689.0	Mm.109341	NM_026316	ENSMUSG00000024885	Aldh3b1	1700001N19Rik|ALDH4|ALDH7	aldehyde dehydrogenase 3 family, member B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-45626323-2	chr17	45626223	45626423	+	635.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24221.0	NM_001177469	653016.0	Mm.45676	NM_001177468	ENSMUSG00000079471	Mymx	EG653016|Esgp|Gm7325|minion|myomerger	myomixer, myoblast fusion factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-3344481-4	chr5	3344359	3344559	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009873, exon 2 of 8)	exon (NM_009873, exon 2 of 8)	566.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-51209751-4	chr17	51209661	51209861	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30409.0	NM_001285991	72238.0	Mm.120650	NM_028162	ENSMUSG00000023923	Tbc1d5	1600014N05Rik	TBC1 domain family, member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-11580164-4	chr4	11580047	11580247	+	838.275024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001256142, intron 1 of 1)	intron (NM_001256142, intron 1 of 1)	485.0	NM_001256142	100503583.0	Mm.249437	NM_001256142	ENSMUSG00000094595	Fsbp	-	fibrinogen silencer binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-68148572-3	chr18	68148454	68148654	+	909.783325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172631, intron 3 of 5)	L2a|LINE|L2	-79392.0	NM_001357444	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-54815563-2	chr6	54815463	54815663	+	806.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1353.0	NM_199143	387524.0	Mm.286149	NM_199143	ENSMUSG00000058446	Znrf2	1190002C14Rik|AU044205|D6Ertd365e	zinc and ring finger 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-80792325-4	chr12	80792229	80792429	+	871.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001242419, intron 1 of 6)	intron (NM_001242419, intron 1 of 6)	1797.0	NM_001242419	217684.0	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21288627-2	chr9	21288527	21288727	+	888.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145416)	promoter-TSS (NM_145416)	-658.0	NM_145416	215194.0	Mm.290690	NM_145416	ENSMUSG00000035047	Kri1	-	KRI1 homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-45245108-3	chr9	45245006	45245206	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198971, intron 4 of 4)	intron (NM_001198971, intron 4 of 4)	21601.0	NR_106054	102466803.0		NR_106054	ENSMUSG00000098361	Mir7086	Gm27643|mmu-mir-7086	microRNA 7086	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67722478-2	chr10	67722378	67722578	+	719.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-150519.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5426521-2	chr19	5426421	5426621	+	828.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_134149, exon 2 of 2)	exon (NM_134149, exon 2 of 2)	1377.0	NM_001256515	107242.0	Mm.329658	NM_134149	ENSMUSG00000047423	AI837181	Bles03|N28173	expressed sequence AI837181	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-149295791-2	chr4	149295691	149295891	+	598.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008441, intron 1 of 20)	intron (NM_008441, intron 1 of 20)	11907.0	NM_207682	16561.0	Mm.402393	NM_008441	ENSMUSG00000063077	Kif1b	A530096N05Rik|AI448212|AI506502|D4Mil1e|KIF1Bp130|KIF1Bp204	kinesin family member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-31996435-2	chr17	31996335	31996535	+	835.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_028902, intron 6 of 7)	intron (NM_028902, intron 6 of 7)	38073.0	NM_028902	74377.0	Mm.75856	NM_028902	ENSMUSG00000002076	Hsf2bp	4932437G14Rik	heat shock transcription factor 2 binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69123629-4	chr11	69123552	69123752	+	974.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_033041)	TTS (NM_033041)	-2725.0	NM_011786	23801.0	Mm.41989	NM_011786	ENSMUSG00000020892	Aloxe3	e-LOX-3|eLOX-3	arachidonate lipoxygenase 3	protein-coding	3.33239117938593	3.13989306742755	3.66627962742393	3.68338756429745	3.29534248989822	1.71800083318214	2.94709308886215	2.73592711953641	-1.11969604671267	0.0925750499876929	0.470509227514405
Merged-chr18-76228149-4	chr18	76228053	76228253	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13548.0	NM_010754	17126.0	Mm.152699	NM_010754	ENSMUSG00000024563	Smad2	7120426M23Rik|Madh2|Madr2|Smad-2|mMad2	SMAD family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-107856806-3	chr13	107856718	107856918	+	677.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 2 of 14)	intron (NM_145456, intron 2 of 14)	33246.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35835281-2	chr17	35835181	35835381	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_011655, exon 4 of 4)	exon (NM_011655, exon 4 of 4)	3020.0	NM_011655	22154.0	Mm.273538	NM_011655	ENSMUSG00000001525	Tubb5	AA408537|AI596182|B130022C14Rik|M(beta)5	tubulin, beta 5 class I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140411591-3	chr5	140411493	140411693	+	807.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7712.0	NM_133916	27979.0	Mm.21671	NM_133916	ENSMUSG00000056076	Eif3b	AL033316|AL033334|AL033369|AW208965|D5Wsu45e|EIF3-ETA|EIF3-P110|EIF3-P116|Eif3s9|PRT1	eukaryotic translation initiation factor 3, subunit B	protein-coding	2.2662809325368	0.957699966931517	1.16486571300871	1.31314271369189	1.39787341079471	1.5758344363207	1.17264072701056	1.91952336675221	-0.0442912086890947	0.971032538943437	0.998431161219273
Merged-chr17-33897288-4	chr17	33897211	33897411	+	835.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-6678.0	NM_001195298	100502766.0	Mm.335713	NM_001195298	ENSMUSG00000079553	Kifc1	100042970|Gm4137|HSET|KNSL2|Kifc5a|Knsl2a|Tctex-7|Tctex-7A|Tctex7|Tctex7a	kinesin family member C1	protein-coding	3.60825199111992	4.15195655143234	3.00639392458397	3.51379771570106	3.36111265027343	4.29257007641066	3.55905396791997	3.7497784297585	0.222819188602825	0.674361302334926	0.99440487726309
Merged-chr1-146024402-2	chr1	146024302	146024502	+	744.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_A|LINE|L1	-471227.0	NM_001357571	215378.0	Mm.441817	NM_153539	ENSMUSG00000035131	Brinp3	B830045N13Rik|Fam5c	bone morphogenetic protein/retinoic acid inducible neural specific 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-87204520-7	chr5	87204464	87204664	+	976.785706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2B2|LINE|L1	50224.0	NM_053215	112417.0	Mm.160362	NM_053215	ENSMUSG00000057425	Ugt2b37	0610033E06Rik	UDP glucuronosyltransferase 2 family, polypeptide B37	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-13523178-2	chr9	13523097	13523297	+	596.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	91836.0	NR_028271	18689.0	Mm.41972	NM_008835	ENSMUSG00000031802	Phxr4	Sp5	per-hexamer repeat gene 4	ncRNA	0.899063359967046	0.136575907237011	0.307226050495104	0.55019039412611	0.501548684904528	0.137912175405033	0.13195386919628	0.12686707046209	-1.9890228722213	0.331355906263586	1
Merged-chr15-28405367-4	chr15	28405272	28405472	+	966.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133365, intron 61 of 78)	intron (NM_133365, intron 61 of 78)	201606.0	NM_133365	110082.0	Mm.248464	NM_133365	ENSMUSG00000022262	Dnah5	AU022615|Dnahc5|Mdnah5|b2b1134Clo|b2b1154Clo|b2b1537Clo|b2b1565Clo|b2b3491Clo|b2b601Clo|mKIAA1603	dynein, axonemal, heavy chain 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46756021-4	chr8	46755913	46756113	+	749.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152560, intron 1 of 7)	A-rich|Low_complexity|Low_complexity	16268.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-39640789-1	chr8	39640689	39640889	+	602.0	f0_balb.idr	intron (NM_001113326, intron 1 of 9)	intron (NM_001113326, intron 1 of 9)	1889.0	NM_031195	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56668972-4	chr17	56668915	56669115	+	927.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4210.0	NM_001252466	71810.0	Mm.29608	NM_027933	ENSMUSG00000002372	Ranbp3	2610024N24Rik|AA408221	RAN binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-37259262-4	chr10	37259152	37259352	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-120326.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-121281043-4	chr7	121280955	121281155	+	955.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-111241.0	NM_001081327	195646.0	Mm.247449	NM_177575	ENSMUSG00000046321	Hs3st2	6430516N12Rik|A830061E14Rik|AW491345	heparan sulfate (glucosamine) 3-O-sulfotransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118487574-2	chr11	118487474	118487674	+	1000.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_153103, exon 14 of 14)	non-coding (NR_153103, exon 14 of 14)	10742.0	NM_001359368	217364.0	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-84783463-3	chr2	84783353	84783553	+	662.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-8024.0	NM_009776	12258.0	Mm.38888	NM_009776	ENSMUSG00000023224	Serping1	C1INH|C1nh	serine (or cysteine) peptidase inhibitor, clade G, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34645862-2	chr17	34645762	34645962	+	694.222229	f1_balb.idr|f1_c57bl6.idr	exon (NM_019873, exon 2 of 2)	exon (NM_019873, exon 2 of 2)	979.0	NM_019873	56299.0	Mm.10025	NM_019873	ENSMUSG00000033739	Fkbpl	DIR1|NG7|Ppiase-X|Wisp39	FK506 binding protein-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-145122315-1	chr2	145122215	145122415	+	745.0	f0_balb.idr	Intergenic	IAPEz-int|LTR|ERVK	-45460.0	NM_001356497	94249.0	Mm.217171	NM_053195	ENSMUSG00000063873	Slc24a3	NCKX3	solute carrier family 24 (sodium/potassium/calcium exchanger), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-61176682-4	chr18	61176605	61176805	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_178277, exon 1 of 20)	5' UTR (NM_178277, exon 1 of 20)	344.0	NM_178277	106894.0	Mm.22574	NM_134134	ENSMUSG00000024622	Hmgxb3	2510002C16Rik|A630042L21Rik|AI413166|mKIAA0194	HMG box domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-91778199-2	chr12	91778099	91778299	+	900.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 1 of 6)	intron (NM_175367, intron 1 of 6)	8237.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166018950-4	chr2	166018831	166019031	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008679, intron 1 of 22)	intron (NM_008679, intron 1 of 22)	26294.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-97945444-4	chr15	97945340	97945540	+	805.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18789.0	NM_001356508	380967.0	Mm.196630	NM_201359	ENSMUSG00000052369	Tmem106c	AI046681|BC046621|D15Ertd405e	transmembrane protein 106C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-81563782-2	chr13	81563682	81563882	+	639.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_054053, exon 17 of 90)	exon (NM_054053, exon 17 of 90)	69362.0	NM_054053	110789.0	Mm.288694	NM_054053	ENSMUSG00000069170	Adgrv1	Frings|Gpr98|Mass1|Mgr1|VLGR1	adhesion G protein-coupled receptor V1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-114892841-4	chr7	114892735	114892935	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55815.0	NR_040317	101786.0	Mm.395157	NR_040317	ENSMUSG00000108379	A730082K24Rik	AU044236	RIKEN cDNA A730082K24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-152340197-4	chr3	152340098	152340298	+	988.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162375, intron 1 of 13)	CpG	209.0	NM_174868	215708.0	Mm.135018	NM_174868	ENSMUSG00000054942	Miga1	A930038D06|AI852168|C030011O14Rik|Fam73a|Mita1	mitoguardin 1	protein-coding	3.9322712906864	1.79996888139761	3.71460792486469	3.86849999707005	4.45320848318034	2.58014782643565	3.5031995739445	4.05134134543277	0.38180114556586	0.569805467568747	0.962718661854691
Merged-chr3-51197317-4	chr3	51197203	51197403	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27144.0	NM_009834	12457.0	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150316751-3	chr4	150316646	150316846	+	779.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 1 of 22)	MIRb|SINE|MIR	34830.0	NM_001085492	68703.0	Mm.291274	NM_001085492	ENSMUSG00000039852	Rere	1110033A15Rik|AI414665|ARG|ARP|ATN1L|AW742570|Atr2|DNB1|eye<m03Jus>|eyes3|mKIAA0458	arginine glutamic acid dipeptide (RE) repeats	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-103358426-3	chr4	103358317	103358517	+	740.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025909, intron 8 of 8)	intron (NM_025909, intron 8 of 8)	-24083.0	NR_040673	622167.0	Mm.244115	NR_040673	ENSMUSG00000086136	Gm12718	-	predicted gene 12718	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-13087430-3	chr10	13087342	13087542	+	911.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	-3346.0	NM_009538	22634.0	Mm.287857	NM_009538	ENSMUSG00000019817	Plagl1	Lot1|Zac1	pleiomorphic adenoma gene-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-23572499-4	chr13	23572390	23572590	+	878.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_178196)	TTS (NM_178196)	1090.0	NM_178196	319181.0	Mm.261673	NM_178196	ENSMUSG00000058385	Hist1h2bg	-	histone cluster 1, H2bg	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-3503308-2	chr5	3503208	3503408	+	901.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 5 of 7)	intron (NM_009873, intron 5 of 7)	-40525.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-34314235-2	chr14	34314135	34314335	+	788.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_008133, intron 1 of 12)	B3|SINE|B2	3508.0	NM_008133	14661.0	Mm.10600	NM_008133	ENSMUSG00000021794	Glud1	AI118167|Gdh-X|Glud|Gludl	glutamate dehydrogenase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-113920158-3	chr13	113920050	113920250	+	938.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172595, intron 1 of 4)	intron (NM_172595, intron 1 of 4)	125642.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-96196272-4	chr9	96196174	96196374	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001184708)	promoter-TSS (NM_001184708)	-1.0	NM_001184706	211586.0	Mm.17977	NM_178667	ENSMUSG00000032411	Tfdp2	1110029I05Rik|A330080J22Rik|DP-3|DP3	transcription factor Dp 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43004788-2	chr4	43004615	43004815	+	828.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_053081, intron 10 of 13)	intron (NM_053081, intron 10 of 13)	-4208.0	NM_009503	269523.0	Mm.245976	NM_009503	ENSMUSG00000028452	Vcp	3110001E05|CDC48|p97|p97/VCP	valosin containing protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-87281817-3	chr1	87281703	87281903	+	860.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028889, intron 1 of 3)	intron (NM_028889, intron 1 of 3)	17450.0	NR_151447	98363.0	Mm.247951	NM_028889	ENSMUSG00000026255	Efhd1	4931430I01Rik|AI452351|PP3051|mitocalcin	EF hand domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3778401-3	chr12	3778318	3778518	+	748.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027870, intron 18 of 19)	intron (NR_027870, intron 18 of 19)	-28562.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-75850570-1	chr16	75850470	75850670	+	637.0	f0_balb.idr	Intergenic	Intergenic	58696.0	NM_023380	67742.0	Mm.131406	NM_023380	ENSMUSG00000022876	Samsn1	4930571B16Rik|930571B16Rik|Hacs1|SLy2	SAM domain, SH3 domain and nuclear localization signals, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124724600-3	chr6	124724496	124724696	+	878.06665	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077705, intron 11 of 15)	intron (NM_001077705, intron 11 of 15)	-6206.0	NR_029792	723944.0		NR_029792	ENSMUSG00000065462	Mir200c	Mirn200c|mir-200c	microRNA 200c	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-133495648-4	chr2	133495551	133495751	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56508.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-60933950-1	chr10	60933850	60934050	+	634.0	f0_balb.idr	intron (NR_033616, intron 1 of 2)	intron (NR_033616, intron 1 of 2)	4182.0	NR_033616	73616.0	Mm.159038	NR_033616	ENSMUSG00000037247	Pldi	1700125F08Rik|Poldi	polymorphic derived intron containing	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-37560600-2	chr1	37560500	37560700	+	585.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19584.0	NM_173870	269181.0	Mm.25861	NM_173870	ENSMUSG00000026110	Mgat4a	9530018I07Rik|GnT-IVa|glcNAc-T-IVa	mannoside acetylglucosaminyltransferase 4, isoenzyme A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-43658829-2	chr7	43658729	43658929	+	881.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_031181, intron 3 of 6)	intron (NM_031181, intron 3 of 6)	1332.0	NM_031181	83382.0	Mm.157702	NM_031181	ENSMUSG00000030474	Siglece	Cd170|Siglec12|Siglec5|Siglec9|Siglecl1|mSiglec-E	sialic acid binding Ig-like lectin E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115202531-4	chr11	115202446	115202646	+	777.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033393, intron 6 of 9)	intron (NM_001033393, intron 6 of 9)	15059.0	NM_001033393	320534.0	Mm.260587	NM_001033393	ENSMUSG00000045980	Tmem104	C630005D06Rik|mFLJ00021	transmembrane protein 104	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-20803389-3	chr16	20803297	20803497	+	792.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68886.0	NM_009379	21832.0	Mm.3943	NM_009379	ENSMUSG00000022847	Thpo	Mgdf|Ml|Mpllg|Tpo	thrombopoietin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-98692225-1	chr5	98692125	98692325	+	841.0	f0_balb.idr	intron (NM_001024614, intron 3 of 5)	MLT1C|LTR|ERVL-MaLR	-162190.0	NM_173404	110075.0	Mm.136461	NM_173404	ENSMUSG00000029335	Bmp3	9530029I04Rik	bone morphogenetic protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-59227554-1	chr11	59227454	59227654	+	1000.0	f1_balb.idr	intron (NM_007476, intron 1 of 4)	CpG	608.0	NM_001130408	11840.0	Mm.371546	NM_007476	ENSMUSG00000048076	Arf1	-	ADP-ribosylation factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-95809427-2	chr8	95809327	95809527	+	544.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_015574, intron 1 of 3)	intron (NR_015574, intron 1 of 3)	-1965.0	NM_001205226	234594.0	Mm.259220	NM_153164	ENSMUSG00000036550	Cnot1	6030411K04Rik|AA815922|D830048B13	CCR4-NOT transcription complex, subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-120889378-2	chr4	120889278	120889478	+	597.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_182929, exon 7 of 8)	exon (NM_182929, exon 7 of 8)	34579.0	NM_182929	242662.0	Mm.192502	NM_182929	ENSMUSG00000032890	Rims3	A730060M23Rik|Nim3|Rim3|mKIAA0237	regulating synaptic membrane exocytosis 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127364392-2	chr7	127364292	127364492	+	751.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR12D|LTR|ERVK	11658.0	NM_175560	269997.0	Mm.221270	NM_175560	ENSMUSG00000054381	Zfp747	6430604K15Rik	zinc finger protein 747	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-95674240-3	chr1	95674144	95674344	+	851.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-6650.0	NM_001159745	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-64187551-4	chr14	64187450	64187650	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253715, intron 4 of 4)	intron (NM_001253715, intron 4 of 4)	83227.0	NM_028525	73382.0	Mm.481055	NM_028525	ENSMUSG00000021966	Prss52	1700049K14Rik|Tesp3	protease, serine 52	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-49413647-1	chr17	49413547	49413747	+	557.0	f1_balb.idr	Intergenic	B3|SINE|B2	-14717.0	NM_028464	56738.0	Mm.22256	NM_020042	ENSMUSG00000064120	Mocs1	3110045D15Rik|AI043170|AW536397	molybdenum cofactor synthesis 1	protein-coding	-0.358303524501071	-0.333007559803484	-0.341100935520039	-0.347471157169951	0.0109090016289157	1.07833479464201	-0.339300341663207	-0.346350132164579	4.24817359752815	0.0656467360748793	1
Merged-chr8-80773014-2	chr8	80772914	80773114	+	545.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021356, intron 8 of 9)	intron (NM_021356, intron 8 of 9)	-33555.0	NM_053124	93762.0	Mm.246803	NM_053124	ENSMUSG00000031715	Smarca5	4933427E24Rik|D030040M08Rik|D330027N15Rik|MommeD4|Snf2h	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166748239-2	chr2	166748139	166748339	+	550.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34407.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-63102403-3	chr14	63102351	63102551	+	754.714294	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-20011.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-54078426-4	chr6	54078343	54078543	+	764.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163640, intron 1 of 12)	intron (NM_001163640, intron 1 of 12)	38511.0	NM_001163640	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	3.11186258670215	2.52353637293438	1.74990573126142	2.48957673372185	2.14078657160121	2.67010491301715	2.45782340217271	3.10407040267611	0.147287114376593	0.854848308333154	0.998431161219273
Merged-chr17-10315074-1	chr17	10314974	10315174	+	658.0	f0_balb.idr	intron (NM_021881, intron 1 of 6)	intron (NM_021881, intron 1 of 6)	4287.0	NM_021881	19317.0	Mm.130694	NM_021881	ENSMUSG00000062078	Qk	1110003F05Rik|1500005P18|QkI|l(17)-1Wis|l17Wis1	quaking	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100533686-6	chr7	100533619	100533819	+	786.444458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur3|SINE|Alu	-3381.0	NM_183270	68185.0	Mm.228995	NM_183270	ENSMUSG00000044881	Coa4	5330414O08Rik|AI115477|AW047259|Chchd8|E2ig2	cytochrome c oxidase assembly factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-13965107-3	chr8	13964988	13965188	+	874.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361630, intron 2 of 3)	intron (NM_001361630, intron 2 of 3)	9689.0	NM_173744	72148.0	Mm.5727	NM_173744	ENSMUSG00000050052	Tdrp	2610019F03Rik	testis development related protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-118573501-1	chr2	118573401	118573601	+	668.333313	f0_balb.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-23815.0	NM_138313	171543.0	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	1.61093491811664	1.12708723356937	1.09643574079744	1.32415470712864	2.50903463279018	2.49567788390264	2.8036983234716	1.86667265125556	3.35035901755921	0.00274207636221504	0.0424592424601351
Merged-chr17-64615084-2	chr17	64614984	64615184	+	832.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008549, intron 1 of 21)	intron (NM_008549, intron 1 of 21)	13435.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-95053959-1	chr8	95053859	95054059	+	554.0	f0_balb.idr	Intergenic	RMER19B|LTR|ERVK	-1144.0	NM_001042715	330830.0	Mm.277112	NM_001042715	ENSMUSG00000031786	Drc7	Ccdc135|Gm770|SRG-L|SRG-S	dynein regulatory complex subunit 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-57197206-3	chr12	57197120	57197320	+	868.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_172577, exon 1 of 10)	5' UTR (NM_172577, exon 1 of 10)	252.0	NM_172577	217593.0	Mm.32835	NM_172577	ENSMUSG00000035472	Slc25a21	9930033G19Rik|A630030I10|BB158148	solute carrier family 25 (mitochondrial oxodicarboxylate carrier), member 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-135740442-4	chr1	135740347	135740547	+	897.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153810, intron 2 of 3)	(CAAAC)n|Simple_repeat|Simple_repeat	11280.0	NM_007791	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-84103598-4	chr17	84103488	84103688	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24928.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119082386-2	chr11	119082286	119082486	+	766.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007625, intron 4 of 4)	intron (NM_007625, intron 4 of 4)	3851.0	NM_007625	12418.0	Mm.268070	NM_007625	ENSMUSG00000039989	Cbx4	MPc2|PC2	chromobox 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83065034-4	chr11	83064942	83065142	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011408)	promoter-TSS (NM_011408)	-70.0	NM_011408	20556.0	Mm.278689	NM_011408	ENSMUSG00000072620	Slfn2	Shlf2	schlafen 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-34007436-4	chr13	34007316	34007516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009068, intron 1 of 10)	intron (NM_009068, intron 1 of 10)	4542.0	NM_009068	19766.0	Mm.374799	NM_009068	ENSMUSG00000021408	Ripk1	D330015H01Rik|RIP|RIP-1|Rinp|Rip1	receptor (TNFRSF)-interacting serine-threonine kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-88998484-4	chr11	88998419	88998619	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009546)	promoter-TSS (NM_009546)	-884.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105827726-1	chr8	105827626	105827826	+	1000.0	f0_c57.idr	promoter-TSS (NM_024445)	promoter-TSS (NM_024445)	-18.0	NM_024445	72236.0	Mm.386810	NM_024445	ENSMUSG00000031893	Tsnaxip1	1700016K08Rik|TXI1	translin-associated factor X (Tsnax) interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124531065-7	chr5	124530909	124531109	+	970.285706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_021430, exon 1 of 7)	5' UTR (NM_021430, exon 1 of 7)	382.0	NM_021430	75695.0	Mm.41180	NM_021430	ENSMUSG00000029392	Rilpl1	2900002H16Rik|6330559I19Rik|GOSPEL	Rab interacting lysosomal protein-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-125756133-2	chr8	125756033	125756233	+	825.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175561, intron 32 of 33)	intron (NM_175561, intron 32 of 33)	21930.0	NM_001310688	66566.0	Mm.25296	NM_025636	ENSMUSG00000031851	Ntpcr	2310079N02Rik|AI449709	nucleoside-triphosphatase, cancer-related	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-105880466-3	chr3	105880367	105880567	+	830.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027025, intron 1 of 6)	MTE2b|LTR|ERVL-MaLR	9609.0	NM_001174169	69296.0	Mm.235024	NM_027025	ENSMUSG00000000562	Tmigd3	1700001d09rik|4930578J19Rik|Tg(H2-K-CALR*)del52Shmd	transmembrane and immunoglobulin domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85943543-2	chr12	85943443	85943643	+	942.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347395, intron 28 of 32)	intron (NM_001347395, intron 28 of 32)	118593.0	NM_001081423	320244.0	Mm.132172	NM_177114	ENSMUSG00000012609	Ttll5	1700048H13Rik|2310009M18Rik|4930556H18Rik|AI428864|D630041K24Rik|R75373|Stamp|mKIAA0998	tubulin tyrosine ligase-like family, member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-82765872-2	chr6	82765772	82765972	+	558.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013820, intron 1 of 17)	RSINE1|SINE|B4	8582.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53118337-2	chr4	53118237	53118437	+	728.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 5 of 49)	intron (NM_013454, intron 5 of 49)	41558.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-142570863-3	chr3	142570751	142570951	+	955.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355403, intron 10 of 11)	intron (NM_001355403, intron 10 of 11)	10495.0	NM_001289493	55932.0	Mm.439718	NM_018734	ENSMUSG00000028268	Gbp3	AW228655|GBP-3|GBP-4|Gbp4	guanylate binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-123312064-4	chr7	123311969	123312169	+	845.470825	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316713, intron 8 of 19)	intron (NM_001316713, intron 8 of 19)	57846.0	NM_001122643	70497.0	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-100499110-3	chr9	100499010	100499210	+	810.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010878, intron 2 of 3)	L1M4|LINE|L1	7746.0	NM_001324530	17973.0	Mm.181485	NM_010878	ENSMUSG00000032475	Nck1	6330586M15Rik|D230010O13Rik|Nck|Nck-1	non-catalytic region of tyrosine kinase adaptor protein 1	protein-coding	0.547604222443031	1.09211691165277	1.04577587841394	1.2225039025374	0.956398426807507	1.10243032710711	0.568805786416702	0.560853292795542	-0.909675065446318	0.572705724455394	1
Merged-chr17-42942281-2	chr17	42942181	42942381	+	836.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65857.0	NM_009847	12488.0	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-75508508-1	chr18	75508408	75508608	+	613.0	f1_c57bl6.idr	intron (NM_201354, intron 9 of 11)	intron (NM_201354, intron 9 of 11)	-6137.0	NR_045879	100038353.0	Mm.440724	NR_045879	ENSMUSG00000097712	Gm10532	-	predicted gene 10532	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-10444748-1	chr17	10444648	10444848	+	705.5	f0_balb.idr	intron (NM_027032, intron 4 of 4)	(TG)n|Simple_repeat|Simple_repeat	-11468.0	NR_077239	319750.0	Mm.383485	NR_077237	ENSMUSG00000089633	A230009B12Rik	-	RIKEN cDNA A230009B12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-84128495-4	chr17	84128418	84128618	+	936.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	BGLII_B|LTR|ERVK	49858.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-160136993-4	chr2	160136895	160137095	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	120342.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-21809708-4	chr10	21809561	21809761	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72523.0	NM_001161845	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	2.83917358757411	3.4343420859202	3.66347927089032	4.27774077469997	2.86504420542094	3.46006126859351	3.69162944124145	4.2974272571418	0.0352769787975158	0.951863441520435	0.998431161219273
Merged-chr9-89705055-4	chr9	89704977	89705177	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025360)	promoter-TSS (NM_025360)	-34.0	NM_025360	66111.0	Mm.27606	NM_025360	ENSMUSG00000032353	Tmed3	1200002G13Rik|AW546672|P24b	transmembrane p24 trafficking protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122402612-2	chr5	122402512	122402712	+	771.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019824, intron 3 of 6)	intron (NM_019824, intron 3 of 6)	10734.0	NM_019824	56378.0	Mm.275942	NM_019824	ENSMUSG00000029465	Arpc3	1110006A04Rik|p21-ARC|p21-Ar|p21Arc	actin related protein 2/3 complex, subunit 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-110433206-2	chr11	110433106	110433306	+	792.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356352, intron 1 of 11)	intron (NM_001356352, intron 1 of 11)	34104.0	NM_001356353	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-173848059-1	chr1	173847959	173848159	+	984.0	f0_balb.idr	Intergenic	Lx|LINE|L1	32128.0	NM_001170853	100040462.0	Mm.463437	NM_001170853	ENSMUSG00000090272	Mndal	Gm2785|Ifi212	myeloid nuclear differentiation antigen like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-61091301-2	chr9	61091201	61091401	+	947.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14085.0	NR_105026	66785.0	Mm.158134	NR_105026	ENSMUSG00000111807	4933433G08Rik	-	RIKEN cDNA 4933433G08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132271526-2	chr4	132271426	132271626	+	745.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1340.0	NR_002865	353373.0	Mm.424675	NR_002865		Rnu11	MBII-407|Mirn801|mir-801|mmu-mir-801	U11 small nuclear RNA	snRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-123266746-1	chr3	123266646	123266846	+	801.5	f1_balb.idr	promoter-TSS (NM_027135)	promoter-TSS (NM_027135)	-750.0	NM_027135	69608.0	Mm.29293	NM_027135	ENSMUSG00000039234	Sec24d	2310020L09Rik|Gm1349	Sec24 related gene family, member D (S. cerevisiae)	protein-coding	0.376065838739578	0.405749346693057	1.14347722824037	0.734616586419839	0.377953761202225	1.32440091613452	0.398278066884931	0.876675371694288	0.503861174759832	0.779086234336785	1
Merged-chr16-28593346-3	chr16	28593233	28593433	+	711.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010199, intron 2 of 5)	intron (NM_010199, intron 2 of 5)	6710.0	NR_030463	751543.0		NR_030463	ENSMUSG00000076064	Mir690	Mirn690|mir-690|mmu-mir-690	microRNA 690	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3824347-2	chr12	3824247	3824447	+	826.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271753, intron 1 of 22)	L2a|LINE|L2	17187.0	NM_001271753	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-135851796-4	chr3	135851699	135851899	+	888.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026228, intron 3 of 8)	Tigger20a|DNA|TcMar-Tigger	-11530.0	NR_040540	71038.0	Mm.410798	NR_040540	ENSMUSG00000106306	4933401H06Rik	-	RIKEN cDNA 4933401H06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-67307879-1	chr18	67307779	67307979	+	610.0	f1_c57bl6.idr	intron (NM_053261, intron 3 of 7)	intron (NM_053261, intron 3 of 7)	18656.0	NM_053261	114663.0	Mm.34079	NM_053261	ENSMUSG00000024525	Impa2	2210415D20Rik|AI326924|AW259601	inositol (myo)-1(or 4)-monophosphatase 2	protein-coding	1.71108845049306	2.27055771999536	2.41071889211248	1.06590893251497	0.79313369408733	0.868263222717702	1.49794722516235	0.824159094780921	-3.20651730052077	0.0187166846108447	0.171596624014963
Merged-chr3-88245933-4	chr3	88245842	88246042	+	886.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_021375, exon 5 of 10)	exon (NM_021375, exon 5 of 10)	8742.0	NM_021375	58176.0	Mm.103777	NM_021375	ENSMUSG00000104445	Rhbg	-	Rhesus blood group-associated B glycoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-87807302-6	chr6	87807238	87807438	+	898.677795	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104478, intron 1 of 2)	intron (NR_104478, intron 1 of 2)	2419.0	NM_133717	69834.0	Mm.37380	NM_133717	ENSMUSG00000030055	Rab43	1810048P08Rik|2500004H21Rik|AW490415	RAB43, member RAS oncogene family	protein-coding	0.530066635902307	0.38195686090106	1.76295533632665	0.569317416310866	0.535999676764048	0.384549759537382	0.940177831857425	0.573366138850487	-1.50787441565393	0.346285903012698	0.8471218399554
Merged-chr13-101840567-2	chr13	101840467	101840667	+	648.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72350.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-122849044-2	chr4	122848955	122849155	+	626.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008917, intron 5 of 8)	B1_Mur4|SINE|Alu	12828.0	NM_008917	19063.0	Mm.277719	NM_008917	ENSMUSG00000028657	Ppt1	9530043G02Rik|AA960502|C77813|CLN1|D4Ertd184e|INCL|PPT	palmitoyl-protein thioesterase 1	protein-coding	-0.630573347133566	-0.618163859239218	-0.274922951233355	-0.625352252463648	-0.629795386282982	0.154287029152031	-0.621321941754998	-0.624803991454427	1.50519823393369	0.594334686316284	1
Merged-chr10-79675855-2	chr10	79675755	79675955	+	731.666626	f1_balb.idr|f1_c57bl6.idr	exon (NM_148934, exon 2 of 2)	exon (NM_148934, exon 2 of 2)	-6340.0	NM_001359818	216150.0	Mm.21981	NM_177613	ENSMUSG00000020307	Cdc34	AI327276|E2-CDC34|UBE2R1	cell division cycle 34	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-82078234-4	chr11	82078138	82078338	+	806.104187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20406.0	NM_011330	20292.0	Mm.4686	NM_011330	ENSMUSG00000020676	Ccl11	Scya11|eotaxin	chemokine (C-C motif) ligand 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-22698215-4	chr8	22698096	22698296	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159774, intron 2 of 21)	intron (NM_001159774, intron 2 of 21)	8387.0	NM_010546	16150.0	Mm.277886	NM_010546	ENSMUSG00000031537	Ikbkb	AI132552|IKK-2|IKK-beta|IKK2|IKK[b]|IKKbeta	inhibitor of kappaB kinase beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-22895434-4	chr2	22895328	22895528	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019501)	promoter-TSS (NM_019501)	-94.0	NM_019501	56075.0	Mm.249752	NM_019501	ENSMUSG00000026784	Pdss1	2610203G20Rik|2700031G06Rik|TPT|TPT 1|Tprt|mDLP1|mSPS1	prenyl (solanesyl) diphosphate synthase, subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-108575598-2	chr9	108575498	108575698	+	771.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_031392, exon 2 of 6)	exon (NM_031392, exon 2 of 6)	3072.0	NM_031392	83669.0	Mm.335454	NM_031392	ENSMUSG00000066357	Wdr6	mWDR6	WD repeat domain 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-92693177-4	chr1	92693039	92693239	+	909.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44298.0	NM_153114	260301.0	Mm.219545	NM_153114	ENSMUSG00000044055	Otos	OTOSP	otospiralin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-162589687-4	chr1	162589602	162589802	+	912.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356527, intron 6 of 7)	intron (NM_001356527, intron 6 of 7)	18874.0	NM_016796	53330.0	Mm.10699	NM_016796	ENSMUSG00000026696	Vamp4	D1Ertd147e|Vamp-4	vesicle-associated membrane protein 4	protein-coding	2.52363653821499	2.17447356802607	1.85817976602083	2.89932898600387	3.31943587529274	4.0058533012614	3.37630277561817	3.48445694275938	1.98346270463172	0.00299086969298712	0.045308654768257
Merged-chr10-111770174-3	chr10	111770092	111770292	+	943.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	104184.0	NR_046029	629206.0	Mm.391444	NR_046029	ENSMUSG00000112533	Gm20758	-	predicted gene, 20758	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80146927-2	chr10	80146827	80147027	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 1 of 4)	intron (NR_038088, intron 1 of 4)	-1345.0	NM_001305798	59090.0	Mm.143813	NM_021565	ENSMUSG00000035621	Midn	3000003C15Rik	midnolin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-51921120-2	chr11	51921020	51921220	+	890.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-46511.0	NM_029976	52626.0	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-79574782-2	chr3	79574682	79574882	+	586.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	6590.0	NR_152118	75879.0	Mm.410800	NR_152118		4930589L23Rik	-	RIKEN cDNA 4930589L23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95862031-4	chr3	95861931	95862131	+	949.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001355759)	TTS (NM_001355759)	-6146.0	NR_151629	70767.0	Mm.279872	NM_027541	ENSMUSG00000015748	Prpf3	3632413F13Rik	pre-mRNA processing factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-29702391-2	chr6	29702291	29702491	+	645.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301407, intron 1 of 7)	MTA_Mm|LTR|ERVL-MaLR	8177.0	NM_146173	232670.0	Mm.225289	NM_146173	ENSMUSG00000001763	Tspan33	1300010A20Rik|Pen	tetraspanin 33	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-12461506-4	chr13	12461425	12461625	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_018886, exon 1 of 10)	5' UTR (NM_018886, exon 1 of 10)	213.0	NM_001291060	56048.0	Mm.474138	NM_018886	ENSMUSG00000057554	Lgals8	1200015E08Rik|AI326142|D13Ertd524e|Lgals-8	lectin, galactose binding, soluble 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-36826117-2	chr17	36825981	36826181	+	846.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR41|LTR|ERVL	-11065.0	NM_001025599	22670.0	Mm.34587	NM_030698	ENSMUSG00000024457	Trim26	AI462198|Zfp173|Zfp1736	tripartite motif-containing 26	protein-coding	1.5917364496683	1.76995206226116	1.71376634934747	2.34225788256865	1.82888481120732	1.78237523438567	1.57137444004458	1.52986378277247	-0.648090007273725	0.52262533857171	0.947836760490745
Merged-chr7-133079065-4	chr7	133078921	133079121	+	855.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009980, intron 2 of 10)	intron (NM_009980, intron 2 of 10)	2839.0	NM_001347623	13017.0	Mm.246240	NM_009980	ENSMUSG00000030970	Ctbp2	AA407280|D7Ertd45e|Gtrgeo6|Ribeye	C-terminal binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-84722266-4	chr10	84722176	84722376	+	994.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027423, intron 27 of 27)	intron (NM_027423, intron 27 of 27)	-33772.0	NM_001024918	71137.0	Mm.79070	NM_027689	ENSMUSG00000020037	Rfx4	4933412G19Rik|NYD-sp10	regulatory factor X, 4 (influences HLA class II expression)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-83859762-3	chr8	83859666	83859866	+	824.111145	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-40332.0	NM_181039	330814.0	Mm.260733	NM_181039	ENSMUSG00000013033	Adgrl1	2900070I05Rik|AI182398|CLIBA|Lec2|Lphn1|mKIAA0821	adhesion G protein-coupled receptor L1	protein-coding	1.16460947504439	2.4913554860473	1.06822029927311	1.90576274562364	0.759349294443203	0.834984345968489	0.811477108769609	2.10120058376546	-1.40889427324856	0.299768616932045	0.801244565215384
Merged-chr5-135013315-3	chr5	135013218	135013418	+	968.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_026688)	promoter-TSS (NR_026688)	-161.0	NR_026688	69812.0	Mm.18422	NR_026688	ENSMUSG00000085042	Abhd11os	2010001M06Rik|AI462243|Wbscr26|Wnscr26	abhydrolase domain containing 11, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-27349503-4	chr16	27349410	27349610	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198112, intron 4 of 4)	intron (NM_198112, intron 4 of 4)	20729.0	NM_198166	224065.0	Mm.326918	NM_198166	ENSMUSG00000056423	Uts2b	Gm538|U2B|Urp|Uts2d	urotensin 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-70922507-2	chr16	70922407	70922607	+	607.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	-208569.0	NR_040561	70972.0	Mm.399391	NR_040561		4931420L22Rik	-	RIKEN cDNA 4931420L22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-51581467-2	chr11	51581367	51581567	+	628.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_153393, exon 29 of 29)	3' UTR (NM_153393, exon 29 of 29)	-3290.0	NM_028398	72947.0	Mm.256875	NM_028398	ENSMUSG00000020359	Phykpl	2900006B13Rik|Agxt2l2	5-phosphohydroxy-L-lysine phospholyase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-56655825-3	chr19	56655724	56655924	+	922.694458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66548.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-93771709-4	chr13	93771535	93771735	+	983.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009712)	promoter-TSS (NM_009712)	-44.0	NM_009712	11881.0	Mm.300178	NM_009712	ENSMUSG00000042082	Arsb	1110007C02Rik|AI480648|As-1|As-1r|As-1s|As-1t|As1|As1-r|As1-s|As1-t|Asr-1|Ast-1	arylsulfatase B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-87750455-4	chr6	87750410	87750610	+	982.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159697, intron 3 of 7)	intron (NM_001159697, intron 3 of 7)	19641.0	NM_001159697	58229.0	Mm.333229	NM_021418	ENSMUSG00000068263	Efcc1	Ccdc48	EF hand and coiled-coil domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135913403-4	chr5	135913292	135913492	+	983.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018871, intron 1 of 1)	MTD|LTR|ERVL-MaLR	21249.0	NM_018871	22628.0	Mm.233813	NM_018871	ENSMUSG00000051391	Ywhag	14-3-3gamma|D7Bwg1348e	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-96715248-4	chr15	96715133	96715333	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-15505.0	NM_175121	67760.0	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-54112688-6	chr10	54112601	54112801	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36779.0	NR_038016	100502920.0	Mm.403982	NR_038016	ENSMUSG00000097069	Gm16998	-	predicted gene, 16998	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-134638043-3	chr4	134637956	134638156	+	808.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207237, intron 2 of 11)	intron (NM_207237, intron 2 of 11)	66234.0	NM_207237	230815.0	Mm.18905	NM_207237	ENSMUSG00000037306	Man1c1	AI593348	mannosidase, alpha, class 1C, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116096907-3	chr11	116096813	116097013	+	749.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-9918.0	NM_001347642	22378.0	Mm.284792	NM_016852	ENSMUSG00000034341	Wbp2	-	WW domain binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-132305980-3	chr7	132305878	132306078	+	783.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029935, intron 1 of 7)	intron (NM_029935, intron 1 of 7)	-9686.0	NR_028578	100043682.0	Mm.482794	NR_028578	ENSMUSG00000109270	Gm10584	-	predicted gene 10584	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-21393164-2	chr12	21393080	21393280	+	813.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_011739, intron 4 of 4)	intron (NM_011739, intron 4 of 4)	-19548.0	NM_009615	11491.0	Mm.27681	NM_009615	ENSMUSG00000052593	Adam17	CD156b|Tace	a disintegrin and metallopeptidase domain 17	protein-coding	3.00765647577	3.56911352826755	3.60923754936338	2.84563504767925	3.55805632846163	3.50506618329687	4.26345412976509	2.98134687765576	0.563232279936203	0.330799346991505	0.83197671091297
Merged-chr2-180699822-2	chr2	180699722	180699922	+	604.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291432, intron 1 of 5)	intron (NM_001291432, intron 1 of 5)	2280.0	NM_011805	23856.0	Mm.253836	NM_011805	ENSMUSG00000038914	Dido1	6720461J16Rik|D130048F08Rik|DATF-1|DIO-1|Datf1|dido	death inducer-obliterator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-54149986-4	chr11	54149880	54150080	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	49056.0	NM_011031	18452.0	Mm.3705	NM_011031	ENSMUSG00000018906	P4ha2	AA407196|C76437|P4hl	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-16828871-1	chr16	16828771	16828971	+	544.0	f1_balb.idr	intron (NM_015773, intron 2 of 10)	intron (NM_015773, intron 2 of 10)	492.0	NM_015773	50525.0	Mm.31701	NM_015773	ENSMUSG00000022783	Spag6l	PF16|Spag6|Spag6l1	sperm associated antigen 6-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-41299149-2	chr8	41299049	41299249	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023662, intron 22 of 37)	intron (NM_023662, intron 22 of 37)	59390.0	NM_023662	18536.0	Mm.117896	NM_023662	ENSMUSG00000031592	Pcm1	2600002H09Rik|9430077F19Rik|C030044G17Rik	pericentriolar material 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34995149-2	chr17	34995050	34995250	+	679.625	f1_balb.idr|f1_c57bl6.idr	Intergenic	MYSERV-int|LTR|ERVK	5596.0	NM_033075	110956.0	Mm.22506	NM_033075		D17H6S56E-5	G7e	DNA segment, Chr 17, human D6S56E 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102463280-2	chr12	102463219	102463419	+	764.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5815.0	NM_001199004	27277.0	Mm.273370	NM_013747	ENSMUSG00000021192	Golga5	Ret-II	golgi autoantigen, golgin subfamily a, 5	protein-coding	-0.986117776978398	-1.33156256825259	-1.34133402424827	-1.34936058913999	-1.21427833167172	-1.32944505297573	-1.33912198079506	-1.34792383786197	-0.98711403806483	0.775821656509867	1
Merged-chr19-21896557-4	chr19	21896488	21896688	+	843.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	118248.0	NM_031997	83921.0	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	3.12521509658391	4.44956874426445	3.20065251156441	3.3957983044897	3.05849707359599	4.65330832477467	2.4997483183429	4.07656797638957	0.238802732268983	0.70742312079912	0.998431161219273
Merged-chr1-152025464-4	chr1	152025355	152025555	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197990, intron 1 of 5)	MTD|LTR|ERVL-MaLR	64865.0	NM_197990	69399.0	Mm.278031	NM_197990	ENSMUSG00000032666	1700025G04Rik	2610510E02Rik|2900042O04Rik	RIKEN cDNA 1700025G04 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-77130697-4	chr10	77130578	77130778	+	976.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009929, intron 2 of 41)	intron (NM_009929, intron 2 of 41)	-16973.0	NM_001109991	12822.0	Mm.4352	NM_009929	ENSMUSG00000001435	Col18a1	-	collagen, type XVIII, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-103084700-2	chr2	103084600	103084800	+	721.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355474, intron 2 of 5)	intron (NM_001355474, intron 2 of 5)	11025.0	NM_019735	56369.0	Mm.24772	NM_019735	ENSMUSG00000010911	Apip	APIP2|CGI-29|Mmrp19	APAF1 interacting protein	protein-coding	0.223204507532854	-0.0225649735312597	-0.0276807249475981	-0.03162400315003	0.106245361920429	0.590556012103151	-0.0265528828633857	0.498223334510274	2.37594298914324	0.273658779390178	1
Merged-chr15-61989374-4	chr15	61989318	61989518	+	844.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010849, exon 3 of 3)	exon (NM_010849, exon 3 of 3)	4077.0	NM_001177352	17869.0	Mm.2444	NM_010849	ENSMUSG00000022346	Myc	AU016757|Myc2|Niard|Nird|bHLHe39	myelocytomatosis oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-131239718-5	chr2	131239597	131239797	+	941.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001206382, intron 3 of 7)	PB1D10|SINE|Alu	5634.0	NM_144888	228607.0	Mm.287226	NM_144888	ENSMUSG00000037523	Mavs	D430028G21Rik|IPS-1|Visa|cardif	mitochondrial antiviral signaling protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-43451493-4	chr11	43451386	43451586	+	882.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR11A|LTR|ERVK	17755.0	NM_198936	193116.0	Mm.28200	NM_148673	ENSMUSG00000020409	Slu7	AU018913|D11Ertd730e|D3Bwg0878e	SLU7 splicing factor homolog (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-164047412-2	chr2	164047312	164047512	+	651.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114079, intron 11 of 13)	intron (NM_001114079, intron 11 of 13)	22188.0	NM_001114079	381404.0	Mm.82301	NM_001114079	ENSMUSG00000054582	Pabpc1l	1810053B01Rik|Epab	poly(A) binding protein, cytoplasmic 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-12500760-4	chr4	12500661	12500861	+	859.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-328746.0	NM_026558	68099.0	Mm.25340	NM_026558	ENSMUSG00000028218	Fam92a	6720467C03Rik|Fam92a1	family with sequence similarity 92, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-99186310-4	chr11	99186228	99186428	+	894.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31251.0	NM_007719	12775.0	Mm.2932	NM_007719	ENSMUSG00000037944	Ccr7	CC-CKR-7|CCR-7|CD197|Cdw197|Cmkbr7|EBI1|Ebi1h	chemokine (C-C motif) receptor 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-98890998-4	chr13	98890886	98891086	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001048267)	promoter-TSS (NM_001048267)	56.0	NM_001048267	238799.0	Mm.173286	NM_178716	ENSMUSG00000009470	Tnpo1	AU021749|D13Ertd688e|IPO2|Kpnb2|MIP|MIP1|TRN	transportin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-112800733-4	chr13	112800609	112800809	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008247)	promoter-TSS (NM_008247)	-68.0	NM_008903	19012.0	Mm.291029	NM_008247	ENSMUSG00000021759	Plpp1	Hic53|Hpic53|LPP-1|LPP1|PAP-2a|PAP2-alpha|PAP2a|Ppap2a|mPAP	phospholipid phosphatase 1	protein-coding	2.51194622062887	2.62485853654014	1.37874110115513	2.64798099568858	1.8814532548322	2.84110719684118	2.44647985583438	1.9740981959462	-0.098447541875622	0.913302214336341	0.998431161219273
Merged-chr11-107328739-2	chr11	107328639	107328839	+	587.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359616, intron 2 of 8)	intron (NM_001359616, intron 2 of 8)	-139358.0	NM_001161329	68979.0	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-72442107-1	chr12	72442007	72442207	+	582.0	f0_c57.idr	promoter-TSS (NM_001142729)	promoter-TSS (NM_001142729)	-142.0	NM_001142729	78257.0	Mm.266280	NM_030070	ENSMUSG00000021090	Lrrc9	4921529O18Rik|4930432K16Rik	leucine rich repeat containing 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-114460806-3	chr13	114460721	114460921	+	649.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1870.0	NM_008046	14313.0	Mm.4913	NM_008046	ENSMUSG00000021765	Fst	AL033346|FS	follistatin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-10006607-4	chr8	10006511	10006711	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033622)	promoter-TSS (NM_033622)	-22.0	NM_033622	24099.0	Mm.28835	NM_033622	ENSMUSG00000031497	Tnfsf13b	BAFF|BLyS|D8Ertd387e|TALL-1|TALL1|THANK|TNFSF20|Tnlg7a|zTNF4	tumor necrosis factor (ligand) superfamily, member 13b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150610962-1	chr4	150610862	150611062	+	910.0	f1_balb.idr	exon (NM_001085492, exon 13 of 23)	exon (NM_001085492, exon 13 of 23)	41212.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0.0951094272150917	-0.156075018884902	0.292938445550501	0.550533983604547	-0.169912144347263	-0.154984551350518	-0.159844930717909	-0.163990260634616	-3.81455409916236	0.096167569951768	1
Merged-chr11-120007699-2	chr11	120007599	120007799	+	680.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001037755)	TTS (NM_001037755)	-7068.0	NR_037225	100526518.0		NR_037225	ENSMUSG00000105524	Mir3065	mir-3065|mmu-mir-3065	microRNA 3065	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-146675304-4	chr6	146675225	146675425	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18107.0	NR_046277	74925.0	Mm.386304	NR_046277	ENSMUSG00000085238	4930479D17Rik	-	RIKEN cDNA 4930479D17 gene	ncRNA	6.36270799485045	7.1140192971659	6.42277813313899	6.09808357103561	6.32634341472191	6.75119141718094	6.12397039949946	6.56565314859383	-0.0931070079029579	0.701247445729738	0.998431161219273
Merged-chr3-144686134-2	chr3	144686034	144686234	+	699.75	f1_balb.idr|f1_c57bl6.idr	TTS (NM_019464)	TTS (NM_019464)	34201.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-83312678-4	chr17	83312582	83312782	+	903.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38249.0	NM_001114361	78798.0	Mm.295565	NM_199466	ENSMUSG00000032624	Eml4	4930443C24Rik|AI644019	echinoderm microtubule associated protein like 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-109420956-4	chr4	109420845	109421045	+	960.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145948, intron 2 of 17)	intron (NM_001145948, intron 2 of 17)	5298.0	NM_001145948	230603.0	Mm.33091	NM_153392	ENSMUSG00000028555	Ttc39a	4922503N01Rik	tetratricopeptide repeat domain 39A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-139220501-4	chr7	139220399	139220599	+	965.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001143755, intron 4 of 8)	intron (NM_001143755, intron 4 of 8)	-7192.0	NM_001162540	57740.0	Mm.65336	NM_021302	ENSMUSG00000015981	Stk32c	PKE|Pkek|YANK3	serine/threonine kinase 32C	protein-coding	4.40671800404607	4.95864477920047	4.22037984121055	4.49899122129328	3.75068328771265	3.71168472743697	2.64298307640288	4.64103181487465	-0.885701142461331	0.0737137282663905	0.410338994002546
Merged-chr10-81057545-2	chr10	81057445	81057645	+	664.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358550, intron 1 of 11)	intron (NM_001358550, intron 1 of 11)	2631.0	NM_001358549	52551.0	Mm.30068	NM_024499	ENSMUSG00000004937	Sgta	5330427H01Rik|AI194281|D10Ertd190e|Sgt|Stg	small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-140621053-2	chr6	140620953	140621153	+	978.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR88b|LTR|Gypsy?	-1610.0	NM_178803	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35174177-2	chr17	35174077	35174277	+	723.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019467, intron 1 of 7)	intron (NM_019467, intron 1 of 7)	1875.0	NM_019467	11629.0	Mm.10747	NM_019467	ENSMUSG00000024397	Aif1	AI607846|AIF-1|D17H6S50E|G1|Iba1	allograft inflammatory factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-80208498-3	chr17	80208418	80208618	+	852.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1213.0	NM_001195485	225027.0	Mm.292016	NM_146083	ENSMUSG00000024097	Srsf7	35kDa|9430065L19Rik|9G8|NX-96|Sfrs7	serine/arginine-rich splicing factor 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-49856868-1	chr16	49856768	49856968	+	698.0	f0_balb.idr	intron (NM_010581, intron 1 of 9)	intron (NM_010581, intron 1 of 9)	1214.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83271192-4	chr11	83271119	83271319	+	851.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15507.0	NM_001166028	237890.0	Mm.297670	NM_001166028	ENSMUSG00000082101	Slfn14	Gm20|Slfn14-ps	schlafen 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-94743673-4	chr13	94743556	94743756	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-45287.0	NM_009321	21371.0	Mm.379025	NM_009321	ENSMUSG00000042043	Tbca	Tbca13	tubulin cofactor A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5748837-2	chr17	5748737	5748937	+	845.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 8 of 8)	intron (NM_146073, intron 8 of 8)	-49820.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81178053-1	chr15	81177953	81178153	+	849.0	f0_balb.idr	intron (NM_001082536, intron 1 of 13)	intron (NM_001082536, intron 1 of 13)	12704.0	NM_001082536	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-24637581-4	chr16	24637421	24637621	+	988.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 5 of 12)	intron (NM_178665, intron 5 of 12)	-84334.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-17847109-4	chr5	17846999	17847199	+	795.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159558, intron 1 of 15)	intron (NM_001159558, intron 1 of 15)	2693.0	NM_001159557	12491.0	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 molecule	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70357667-2	chr8	70357566	70357766	+	633.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-4387.0	NM_001122829	19704.0	Mm.258280	NM_030680	ENSMUSG00000058301	Upf1	B430202H16Rik|NORF1|PNORF-1|Rent1|Upflp	UPF1 regulator of nonsense transcripts homolog (yeast)	protein-coding	0.710926880564372	0.270776552794301	0.43610672782791	0.419150597834998	0.720997295659843	0.272156209952078	0.266008059355721	0.879519448640668	0.635536643642641	0.729549557949988	1
Merged-chr11-93736830-4	chr11	93736732	93736932	+	972.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	148934.0	NM_001013375	217109.0	Mm.379350	NM_001013375	ENSMUSG00000054079	Utp18	6230425C22Rik|6430513M13|Wdr50	UTP18 small subunit processome component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-27715479-2	chr13	27715379	27715579	+	662.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011120, intron 1 of 5)	Lx3_Mus|LINE|L1	1257.0	NM_001360090	18814.0	Mm.3258	NM_011120	ENSMUSG00000021348	Prl7d1	Ghd19|PLF-RP|PRP|Plfr	prolactin family 7, subfamily d, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-108549682-4	chr6	108549520	108549720	+	933.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 61 of 61)	(TG)n|Simple_repeat|Simple_repeat	59877.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-106261306-3	chr9	106261200	106261400	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13346.0	NM_020559	11655.0	Mm.290578	NM_020559	ENSMUSG00000032786	Alas1	ALAS|ALAS-N|Alas-1|Alas-h	aminolevulinic acid synthase 1	protein-coding	3.43636185426008	3.3562168657423	2.62398961973211	3.07527334001058	2.55610616208152	2.99192762856813	3.34940955274889	2.07423603829641	-0.592438468484563	0.388088213255286	0.877827277965127
Merged-chr8-72273370-2	chr8	72273270	72273470	+	739.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33352.0	NM_007456	11767.0	Mm.290086	NM_007456	ENSMUSG00000003033	Ap1m1	AA408894|AP47|Adtm1A|Cltnm|mu1A	adaptor-related protein complex AP-1, mu subunit 1	protein-coding	-0.271620257002757	-0.253416920638098	0.37223429458788	-0.263923806329755	-0.27046983394432	0.659738770333586	-0.258020579972535	-0.263118866910103	0.793200698211915	0.751666388099621	1
Merged-chr8-6572438-2	chr8	6572338	6572538	+	788.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1467151.0	NM_011388	20494.0	Mm.3500	NM_011388	ENSMUSG00000023073	Slc10a2	9130221J18Rik|AI605518|ASBT|IBAT|ISBT	solute carrier family 10, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120110432-4	chr8	120110305	120110505	+	972.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-3747.0	NM_001163762	234797.0	Mm.101958	NM_172286	ENSMUSG00000031824	6430548M08Rik	AW049007|Kiaa0513|mKIAA0513	RIKEN cDNA 6430548M08 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-75193461-2	chr1	75193361	75193561	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_051999, intron 1 of 2)	intron (NR_051999, intron 1 of 2)	1301.0	NR_051998	52231.0	Mm.259326	NM_026187	ENSMUSG00000026199	Ankzf1	1300008P06Rik|2810025E10Rik|D1Ertd161e	ankyrin repeat and zinc finger domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65193359-3	chr9	65193256	65193456	+	877.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21334.0	NM_177460	214424.0	Mm.31129	NM_177460	ENSMUSG00000032392	Parp16	ARTD15|BC055447|C79952|PARP-16	poly (ADP-ribose) polymerase family, member 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-20958485-1	chr11	20958385	20958585	+	925.5	f0_balb.idr	Intergenic	Intergenic	-127377.0	NM_173752	216551.0	Mm.76694	NM_173752	ENSMUSG00000042363	Lgalsl	1110067D22Rik|A530071M23|Grpa|Hspc159|Lgalsla	lectin, galactoside binding-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101980692-2	chr15	101980592	101980792	+	838.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23650.0	NM_031170	16691.0	Mm.358618	NM_031170	ENSMUSG00000049382	Krt8	AA960620|AL022697|AU019895|Card2|EndoA|K8|Krt-2.8|Krt2-8	keratin 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-80635031-4	chr15	80634981	80635181	+	971.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010815, intron 2 of 6)	intron (NM_010815, intron 2 of 6)	-10992.0	NR_105922	102466773.0		NR_105922	ENSMUSG00000098631	Mir6957	Gm27895|mmu-mir-6957	microRNA 6957	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-31041162-2	chr7	31041062	31041262	+	816.916626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_106017)	promoter-TSS (NR_106017)	677.0	NM_001111073	18301.0	Mm.1870	NM_008761	ENSMUSG00000009687	Fxyd5	EF-8|Oit2|RIC	FXYD domain-containing ion transport regulator 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-75754168-4	chr14	75754083	75754283	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177381, intron 1 of 22)	CpG	310.0	NM_177381	338337.0	Mm.86507	NM_177381	ENSMUSG00000034893	Cog3	E430004N23	component of oligomeric golgi complex 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-25253461-3	chr9	25253360	25253560	+	895.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359738, intron 1 of 12)	intron (NM_001359738, intron 1 of 12)	568.0	NM_001359738	235072.0	Mm.270259	NM_009859	ENSMUSG00000001833	Sept7	Cdc10|E430034N22	septin 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106273780-2	chr11	106273680	106273880	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001130187)	promoter-TSS (NM_001130187)	-808.0	NM_001130187	83796.0	Mm.21772	NM_031878	ENSMUSG00000078619	Smarcd2	AW322457|Baf60b	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-27188201-2	chr14	27188101	27188301	+	857.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289686, intron 2 of 12)	Lx8|LINE|L1	44208.0	NM_001289686	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53307367-4	chr4	53307268	53307468	+	837.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37136.0	NR_033139	381524.0	Mm.23351	NM_001033454	ENSMUSG00000086712	AI427809	Gm1659	expressed sequence AI427809	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-7250816-4	chr9	7250738	7250938	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21676.0	NM_008607	17386.0	Mm.5022	NM_008607	ENSMUSG00000050578	Mmp13	Clg|MMP-13|Mmp1	matrix metallopeptidase 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106542606-2	chr11	106542506	106542706	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198292, intron 5 of 11)	ORR1B1|LTR|ERVL-MaLR	41615.0	NR_030703	100216537.0		NR_030703	ENSMUSG00000065126	Snord104	-	small nucleolar RNA, C/D box 104	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70774735-2	chr8	70774635	70774835	+	874.900024	f1_balb.idr|f1_c57bl6.idr	exon (NM_008841, exon 2 of 16)	exon (NM_008841, exon 2 of 16)	1977.0	NM_008841	18709.0	Mm.12945	NM_008841	ENSMUSG00000031834	Pik3r2	p85beta	phosphoinositide-3-kinase regulatory subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41338233-5	chr19	41338128	41338328	+	789.099976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 2 of 16)	PB1D10|SINE|Alu	46842.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	0.485049978243612	0.718342874135758	0.81300595485092	0.983173911062989	0.341768914583203	0.866748438395089	0.356549985366012	0.350470910079543	-1.68235987679688	0.346132383285827	1
Merged-chr11-34051530-2	chr11	34051448	34051648	+	549.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_010696, intron 2 of 20)	intron (NM_010696, intron 2 of 20)	4620.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-41841410-2	chr5	41841310	41841510	+	607.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081422, intron 1 of 26)	intron (NM_001081422, intron 1 of 26)	2905.0	NM_001310601	665775.0	Mm.158726	NM_001081422	ENSMUSG00000061755	Bod1l	A230054D04Rik|AI853319|FAM44A|mKIAA1327	biorientation of chromosomes in cell division 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100720253-3	chr11	100720067	100720267	+	747.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_024456, exon 2 of 6)	5' UTR (NM_024456, exon 2 of 6)	6317.0	NM_029307	75482.0	Mm.46175	NM_029307	ENSMUSG00000017832	Hspb9	1700007H20Rik	heat shock protein, alpha-crystallin-related, B9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55098761-4	chr19	55098611	55098811	+	791.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356285, intron 3 of 22)	intron (NM_001356285, intron 3 of 22)	766.0	NM_008149	14732.0	Mm.210196	NM_008149	ENSMUSG00000024978	Gpam	GPAT|GPAT-1|GPAT1|P90	glycerol-3-phosphate acyltransferase, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-89264604-1	chr9	89264504	89264704	+	656.0	f0_balb.idr	Intergenic	L1MB2|LINE|L1	53220.0	NM_001359993	107885.0	Mm.486274	NM_026829	ENSMUSG00000066442	Mthfs	1110034I12Rik|2310020H23Rik|AI119695	5, 10-methenyltetrahydrofolate synthetase	protein-coding	0.206206084358921	0.425218371762768	0.080376518231413	0.0763580441529136	0.696685755214211	0.432518754537317	0.254263626954822	0.0770595419437998	1.45580687749556	0.461816126928595	1
Merged-chr5-146786329-2	chr5	146786347	146786547	+	849.369019	f1_balb.idr|f1_c57bl6.idr	intron (NM_011669, intron 1 of 8)	ID_B1|SINE|B4	8509.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	-1.84436392554074	-1.52091821270385	-1.82290882857571	-1.83054882630441	-1.84220491470818	-1.81159244170985	-1.82080331928423	-1.82918127036376	-1.56828060379516	0.655578384384393	1
Merged-chr10-128909765-4	chr10	128909659	128909859	+	911.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007653)	promoter-TSS (NM_007653)	-107.0	NM_007653	12512.0	Mm.371552	NM_007653	ENSMUSG00000025351	Cd63	C75951|ME491|Tspan30	CD63 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-46523696-2	chr18	46523596	46523796	+	929.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_173423, intron 2 of 2)	intron (NM_173423, intron 2 of 2)	2275.0	NM_173423	240263.0	Mm.38249	NM_173423	ENSMUSG00000033319	Fem1c	2610312A07Rik|3632443A22Rik|AI646567	fem-1 homolog c (C.elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-97148634-3	chr7	97148522	97148722	+	885.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162477, intron 1 of 9)	L1MB3|LINE|L1	66871.0	NM_010248	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124862577-2	chr6	124862477	124862677	+	585.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013533, intron 1 of 4)	intron (NM_013533, intron 1 of 4)	1406.0	NM_013533	14788.0	Mm.2514	NM_013533	ENSMUSG00000038390	Gpr162	A-2|BC031437|Grca	G protein-coupled receptor 162	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-45591872-3	chr17	45591778	45591978	+	812.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199113, intron 3 of 13)	intron (NM_001199113, intron 3 of 13)	515.0	NM_022880	63959.0	Mm.29744	NM_022880	ENSMUSG00000023942	Slc29a1	1200014D21Rik|AA407560|ENT1	solute carrier family 29 (nucleoside transporters), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-67327433-4	chr5	67327334	67327534	+	994.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178651, intron 4 of 17)	intron (NM_178651, intron 4 of 17)	20479.0	NM_001310629	109108.0	Mm.234455	NM_178651	ENSMUSG00000029221	Slc30a9	2310024J23Rik|AL024256|GAC63|HUEL|znT-9	solute carrier family 30 (zinc transporter), member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-24625179-4	chr10	24625057	24625257	+	880.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29715.0	NM_010217	14219.0	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-85716006-2	chr11	85715906	85716106	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045875, intron 1 of 5)	intron (NR_045875, intron 1 of 5)	3738.0	NR_045875	71489.0	Mm.442482	NR_045875	ENSMUSG00000086199	Bcas3os1	8430403D17Rik	breast carcinoma amplified sequence 3, opposite strand 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-116350895-3	chr9	116350824	116351024	+	955.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	161744.0	NR_152204	100043817.0	Mm.404276	NR_152204		Gm4668	-	predicted gene 4668	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96245318-4	chr3	96245243	96245443	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013549)	promoter-TSS (NM_013549)	-114.0	NM_178212	319192.0	Mm.5220	NM_178212	ENSMUSG00000063954	Hist2h2aa2	H2a-614|H2a-615	histone cluster 2, H2aa2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118040374-4	chr9	118040260	118040460	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001048146)	promoter-TSS (NM_001048146)	-162.0	NM_001286507	27215.0	Mm.92705	NM_013727	ENSMUSG00000039285	Azi2	AA410145|AZ2	5-azacytidine induced gene 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-77030615-4	chr16	77030510	77030710	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013918, intron 1 of 23)	intron (NM_013918, intron 1 of 23)	16541.0	NM_013918	30940.0	Mm.40986	NM_013918	ENSMUSG00000022867	Usp25	-	ubiquitin specific peptidase 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56036725-4	chr17	56036629	56036829	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252471)	promoter-TSS (NM_001252471)	-70.0	NM_001357649	20405.0	Mm.1773	NM_013664	ENSMUSG00000003200	Sh3gl1	C77078|EEN|SH3P8|Sh3d2b	SH3-domain GRB2-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-113931068-4	chr5	113930978	113931178	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22372.0	NM_011779	23790.0	Mm.260158	NM_011779	ENSMUSG00000004530	Coro1c	AL022675|AW455561|AW548837	coronin, actin binding protein 1C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-55925143-3	chr4	55925035	55925235	+	956.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-392660.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-120175248-2	chr1	120175148	120175348	+	708.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028439, intron 5 of 5)	intron (NM_028439, intron 5 of 5)	54061.0	NM_001172074	73103.0	Mm.271602	NM_028439	ENSMUSG00000026388	3110009E18Rik	-	RIKEN cDNA 3110009E18 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-150816776-2	chr2	150816676	150816876	+	743.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_153781, exon 10 of 20)	exon (NM_153781, exon 10 of 20)	25794.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-69145336-2	chr14	69145236	69145436	+	658.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26466.0	NM_010920	18092.0	Mm.390691	NM_010920	ENSMUSG00000044186	Nkx2-6	AV044928|Nkx-2.6|Nkx2.6|Tix|tinman	NK2 homeobox 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4053133-2	chr19	4053033	4053233	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6314.0	NM_144869	225884.0	Mm.440201	NM_144869	ENSMUSG00000058216	Gstp3	-	glutathione S-transferase pi 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44196567-4	chr9	44196444	44196644	+	932.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007619, intron 2 of 15)	L1MB5|LINE|L1	37502.0	NM_007619	12402.0	Mm.266871	NM_007619	ENSMUSG00000034342	Cbl	4732447J05Rik|Cbl-2|c-Cbl|cbl	Casitas B-lineage lymphoma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127079593-2	chr10	127079493	127079693	+	595.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001301014, exon 1 of 18)	5' UTR (NM_001301014, exon 1 of 18)	686.0	NM_001033263	216439.0	Mm.336761	NM_001033263	ENSMUSG00000025422	Agap2	AGAP-2|Centg1|PIKE|cnt-g1|mKIAA0167	ArfGAP with GTPase domain, ankyrin repeat and PH domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-114190914-4	chr7	114190791	114190991	+	713.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	63789.0	NM_033370	70349.0	Mm.277024	NM_033370	ENSMUSG00000030754	Copb1	2610019B04Rik	coatomer protein complex, subunit beta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-9031111-2	chr3	9031010	9031210	+	888.0833130000001	f0_c57.idr|f1_c57bl6.idr	Intergenic	RLTR28B|LTR|ERVL	-26387.0	NM_001357075	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	3.21681835697185	2.81231479535247	2.71535417693823	2.42585420385452	1.55033487663366	2.83352197255624	1.40216935420454	2.31587324915661	-1.373521275505	0.115613178727033	0.532827241370144
Merged-chr10-18237435-3	chr10	18237332	18237532	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2451.0	NM_144820	215814.0	Mm.296565	NM_144820	ENSMUSG00000059554	Ccdc28a	1700009P13Rik|AI480677	coiled-coil domain containing 28A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-78748836-4	chr12	78748741	78748941	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019579)	promoter-TSS (NM_019579)	-106.0	NM_019579	56217.0	Mm.425777	NM_019579	ENSMUSG00000021112	Mpp5	3830420B02Rik|AI255216|AI644496|Pals1	membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)	protein-coding	6.74120716918912	6.49048652151781	6.31953315917152	7.08953593377075	6.80012021618753	6.51021723671772	6.34094942847394	6.95455993995306	-0.0197433415446216	0.928216784611013	0.998431161219273
Merged-chr6-98329591-3	chr6	98329491	98329691	+	631.888855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001128092, intron 2 of 3)	intron (NM_001128092, intron 2 of 3)	13163.0	NM_001128092	330390.0	Mm.484161	NM_001128092	ENSMUSG00000090667	Gm765	-	predicted gene 765	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-17682609-6	chr12	17682636	17682836	+	993.595215	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur3|SINE|Alu	-8073.0	NM_001361645	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	1.36972904444511	1.20265098711299	1.60121762887074	1.55564805073345	1.58698863670437	0.993597995697525	1.61403906322743	1.56369379166942	0.0998940293070515	0.933094257072301	0.998431161219273
Merged-chr7-13024374-4	chr7	13024213	13024413	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_011588, exon 1 of 17)	5' UTR (NM_011588, exon 1 of 17)	161.0	NM_011588	21849.0	Mm.15701	NM_011588	ENSMUSG00000005566	Trim28	AA408787|KAP-1|KRIP-1|MommeD9|Tif1b|Tif1beta	tripartite motif-containing 28	protein-coding	0.259180636957253	0.36462781622251	2.77215739116648	0.306471199735645	0.266541579816816	0.371521578689149	2.79876251154539	0.31116882655442	0.0414507407034554	0.989848524996963	0.998431161219273
Merged-chr4-141994768-1	chr4	141994668	141994868	+	814.0	f0_balb.idr	intron (NM_177868, intron 2 of 31)	intron (NM_177868, intron 2 of 31)	11776.0	NR_040672	545691.0	Mm.332015	NR_040672	ENSMUSG00000085424	Fhad1os1	Gm13037	forkhead-associated (FHA) phosphopeptide binding domain 1, opposite strand 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-61975436-2	chr15	61975336	61975536	+	542.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9905.0	NM_001177354	17869.0	Mm.2444	NM_010849	ENSMUSG00000022346	Myc	AU016757|Myc2|Niard|Nird|bHLHe39	myelocytomatosis oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53123662-3	chr4	53123565	53123765	+	794.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 5 of 49)	intron (NM_013454, intron 5 of 49)	36230.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-70477743-4	chr12	70477631	70477831	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_037248, intron 2 of 4)	LTR16E2|LTR|ERVL	24577.0	NM_028339	72736.0	Mm.204670	NM_028339	ENSMUSG00000021072	Tmx1	2810425A04Rik|AI465319|Txndc1	thioredoxin-related transmembrane protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91974016-2	chr2	91973916	91974116	+	957.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10453.0	NM_138306	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	0.93146502059035	1.65425929942233	0.494257992564173	0.85711748841763	1.4230009570446	0.509111745958128	0.496957407959102	0.4863978436978	-1.01636384456975	0.547600900584466	0.957826773868235
Merged-chr10-117847481-2	chr10	117847381	117847581	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-1507.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-26697282-4	chr19	26697187	26697387	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011416, intron 22 of 32)	intron (NM_011416, intron 22 of 32)	-50878.0	NM_001347439	67155.0	Mm.491146	NM_011416	ENSMUSG00000024921	Smarca2	2610209L14Rik|SNF2alpha|Snf2l2|brahma|brm	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-121671558-4	chr9	121671464	121671664	+	879.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011703, exon 13 of 13)	3' UTR (NM_011703, exon 13 of 13)	28848.0	NM_011703	22354.0	Mm.282007	NM_011703	ENSMUSG00000032528	Vipr1	AV071699|VIP-R1|VPAC1	vasoactive intestinal peptide receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127676898-4	chr10	127676777	127676977	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113211)	promoter-TSS (NM_001113211)	-188.0	NM_173732	210035.0	Mm.251075	NM_173732	ENSMUSG00000040195	Nemp1	Tmem194|Tmem194a	nuclear envelope integral membrane protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-40433337-2	chr12	40433237	40433437	+	617.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_172575, intron 1 of 12)	MLT1C|LTR|ERVL-MaLR	12453.0	NM_172575	246196.0	Mm.26852	NM_172575	ENSMUSG00000055917	Zfp277	2410017E24Rik|NIRF4	zinc finger protein 277	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64883668-4	chr5	64883591	64883791	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49008.0	NM_030682	21897.0	Mm.273024	NM_030682	ENSMUSG00000044827	Tlr1	-	toll-like receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72535350-4	chr6	72535253	72535453	+	832.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9038.0	NM_007599	12332.0	Mm.18626	NM_007599	ENSMUSG00000056737	Capg	gCap39|mbh1	capping protein (actin filament), gelsolin-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-73902317-2	chr12	73902217	73902417	+	692.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001313920, intron 1 of 14)	intron (NM_001313920, intron 1 of 14)	993.0	NM_001313920	15251.0	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127177937-4	chr10	127177861	127178061	+	982.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177615, exon 5 of 17)	exon (NM_177615, exon 5 of 17)	2684.0	NM_177615	216441.0	Mm.248373	NM_177615	ENSMUSG00000040441	Slc26a10	C78409|D630010I07	solute carrier family 26, member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91595457-2	chr16	91595357	91595557	+	661.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_030018, intron 1 of 6)	intron (NM_030018, intron 1 of 6)	2223.0	NM_030018	77975.0	Mm.290341	NM_030018	ENSMUSG00000022964	Tmem50b	AU015466|AU019872|B230114J08Rik	transmembrane protein 50B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-92485846-4	chr2	92485757	92485957	+	907.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25339.0	NM_145832	228368.0	Mm.273990	NM_145832	ENSMUSG00000049922	Slc35c1	E430007K15Rik|fuct1	solute carrier family 35, member C1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-130858356-2	chr5	130858256	130858456	+	792.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	409564.0	NM_021371	140904.0	Mm.40875	NM_021371	ENSMUSG00000060371	Caln1	9630012C17Rik|Cabp8|MNCb-0849	calneuron 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-60037203-4	chr2	60037189	60037389	+	628.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001182, intron 2 of 35)	intron (NM_001001182, intron 2 of 35)	88451.0	NM_001001182	407823.0	Mm.228071	NM_001001182	ENSMUSG00000026987	Baz2b	5830435C13Rik|BC053917|D2Ertd794e	bromodomain adjacent to zinc finger domain, 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-38019074-4	chr7	38018964	38019164	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011274, intron 1 of 10)	CpG	488.0	NM_011274	19777.0	Mm.387220	NM_011274	ENSMUSG00000030421	Uri1	C80913|NNX3|Rmp	URI1, prefoldin-like chaperone	protein-coding	4.34819789488314	4.0515714149628	3.25946127265199	4.18425454220139	4.42057080102931	4.41082615365382	4.78816766838463	4.09055304688619	0.555789390522929	0.202191000152017	0.688129998058974
Merged-chr7-19699773-4	chr7	19699682	19699882	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009696)	promoter-TSS (NM_009696)	-594.0	NM_009696	11816.0	Mm.305152	NM_009696	ENSMUSG00000002985	Apoe	AI255918|Apo-E	apolipoprotein E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-55975684-2	chr16	55975584	55975784	+	908.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_173026, intron 1 of 10)	intron (NM_173026, intron 1 of 10)	-1067.0	NR_027965	66391.0	Mm.472722	NM_133677	ENSMUSG00000102101	Zbtb11os1	2310061J03Rik	zinc finger and BTB domain containing 11, opposite strand 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-84190844-2	chr12	84190744	84190944	+	665.416687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163501, intron 1 of 12)	intron (NM_001163501, intron 1 of 12)	3171.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-104504262-1	chr13	104504162	104504362	+	611.0	f0_c57.idr	Intergenic	RMER6B|LTR|ERVK	216427.0	NM_001081020	108154.0	Mm.208125	NM_175496	ENSMUSG00000046169	Adamts6	A930019D11Rik|ADAM-TS6|b2b1879.1Clo|b2b2029Clo|b2b2182Clo|b2b2187.1Clo|b2b2228Clo	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 6	protein-coding	1.63047804079991	0.250327759080417	0.656436147433017	0.229896531320434	0.216887439975751	1.02489568225698	0.241440654859439	0.231480815472468	-1.58543204777682	0.410272959841922	0.894124783031614
Merged-chr1-87647969-2	chr1	87647869	87648069	+	630.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110192, intron 2 of 26)	(CA)n|Simple_repeat|Simple_repeat	27657.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-13164947-2	chr2	13164847	13165047	+	552.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009105, intron 8 of 8)	intron (NM_009105, intron 8 of 8)	106468.0	NM_009105	20163.0	Mm.905	NM_009105	ENSMUSG00000026727	Rsu1	RsuI|rsp-1	Ras suppressor protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114577077-2	chr11	114576977	114577177	+	888.083374	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-91466.0	NM_023372	67671.0	Mm.238817	NM_023372	ENSMUSG00000057322	Rpl38	0610025G13Rik|Rbt|Ts|Tss	ribosomal protein L38	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-84671978-3	chr18	84671883	84672083	+	917.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023149, intron 7 of 11)	intron (NM_023149, intron 7 of 11)	10076.0	NM_001289531	66054.0	Mm.29646	NM_023149	ENSMUSG00000024644	Cndp2	0610010E05Rik|C76600|Cn2|Dip-2|Pep-1|Pep1	CNDP dipeptidase 2 (metallopeptidase M20 family)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-125552242-4	chr7	125552144	125552344	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001008700)	promoter-TSS (NM_001008700)	-38.0	NM_001008700	16190.0	Mm.233802	NM_010557	ENSMUSG00000030748	Il4ra	CD124|Il4r	interleukin 4 receptor, alpha	protein-coding	5.40859778111023	5.58173793328607	5.8018203791068	5.55490151268633	5.09196347148242	4.68098413645256	5.6989108919597	4.8295077179197	-0.525757236625351	0.0864916865986905	0.452103073981014
Merged-chr1-36368808-4	chr1	36368713	36368913	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172652, intron 1 of 20)	CpG	368.0	NM_172652	226976.0	Mm.24734	NM_172652	ENSMUSG00000010453	Kansl3	4632411B12Rik|4932435K23|AI431067|AI647574|C85723|Kiaa1310|mKIAA1310	KAT8 regulatory NSL complex subunit 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-63899341-4	chr4	63899249	63899449	+	863.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38065.0	NM_009403	21949.0	Mm.4664	NM_009403	ENSMUSG00000028362	Tnfsf8	CD153|CD30LG|Cd30l|Tnlg3a	tumor necrosis factor (ligand) superfamily, member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-109860771-1	chr11	109860671	109860871	+	628.0	f1_c57bl6.idr	Intergenic	Intergenic	14893.0	NR_045909	73257.0	Mm.250442	NR_045909	ENSMUSG00000087393	1700023C21Rik	-	RIKEN cDNA 1700023C21 gene	ncRNA	2.69448842601621	3.11399512200623	1.95647062354905	2.78479680438438	1.25648410623853	1.11988487451627	1.08335164680909	1.32726497984936	-4.51099320150832	0.000301892196434626	0.00738200252613311
Merged-chr11-106540392-2	chr11	106540292	106540492	+	655.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_198292, intron 5 of 11)	intron (NM_198292, intron 5 of 11)	39401.0	NR_030703	100216537.0		NR_030703	ENSMUSG00000065126	Snord104	-	small nucleolar RNA, C/D box 104	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-18721552-2	chr13	18721452	18721652	+	689.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172120, intron 1 of 28)	L1M3|LINE|L1	4260.0	NM_172120	218035.0	Mm.27389	NM_172120	ENSMUSG00000041236	Vps41	AI317346|Vam2|mVam2	VPS41 HOPS complex subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-38753688-4	chr16	38753579	38753779	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152434, intron 2 of 6)	intron (NR_152434, intron 2 of 6)	11420.0	NM_001285793	56375.0	Mm.182377	NM_019804	ENSMUSG00000022793	B4galt4	9130402O08Rik|B4galt-IV|b4Gal-T4|beta4Gal-T4|beta4GalT-IV	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-143051510-2	chr6	143051410	143051610	+	600.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001362117, intron 11 of 26)	intron (NM_001362117, intron 11 of 26)	48642.0	NM_001362118	74741.0	Mm.130260	NM_029081	ENSMUSG00000030279	C2cd5	5730419I09Rik|C030008B15Rik|CDP138	C2 calcium-dependent domain containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-5682176-4	chr2	5682060	5682260	+	862.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290374, intron 1 of 9)	MER21C|LTR|ERVL	-6114.0	NM_001290376	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	-1.2111396805985	-1.32488695513244	-1.33469168374779	-1.34274557975998	-0.971233355067795	-1.32276222954009	-1.3324721081028	-1.34130393622446	1.06681499898033	0.75787734025643	1
Merged-chr11-119920061-3	chr11	119919963	119920163	+	801.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001085498)	TTS (NM_001085498)	6253.0	NM_001085498	208092.0	Mm.306673	NM_001085498	ENSMUSG00000025371	Chmp6	2400004G01Rik	charged multivesicular body protein 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-125725162-4	chr8	125725082	125725282	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9021.0	NM_025636	66566.0	Mm.25296	NM_025636	ENSMUSG00000031851	Ntpcr	2310079N02Rik|AI449709	nucleoside-triphosphatase, cancer-related	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80741829-1	chr10	80741729	80741929	+	586.0	f0_c57.idr	intron (NM_007460, intron 1 of 30)	CpG	446.0	NM_007460	11776.0	Mm.27082	NM_007460	ENSMUSG00000020198	Ap3d1	AA407035|Ap3d|Bolvr|mBLVR1|mh|mocha	adaptor-related protein complex 3, delta 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-25559069-2	chr9	25558969	25559169	+	610.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 3 of 7)	RLTR31B2|LTR|ERVK	77472.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-154305639-3	chr2	154305552	154305752	+	812.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-1592.0	NM_001025574	433492.0	Mm.330682	NM_001025574	ENSMUSG00000067996	Bpifb9b	5430413K10Rik|AI413838	BPI fold containing family B, member 9B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-134494122-4	chr1	134493996	134494196	+	836.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145510)	promoter-TSS (NM_145510)	-564.0	NM_145510	98710.0	Mm.198119	NM_145510	ENSMUSG00000042229	Rabif	AI842864|AW549708|E130318E12Rik|MSS4|RASGFR3	RAB interacting factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-158140873-2	chr2	158140773	158140973	+	837.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009373, intron 2 of 12)	intron (NM_009373, intron 2 of 12)	5519.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-79696155-4	chr2	79696054	79696254	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11626.0	NM_172420	75276.0	Mm.257373	NM_172420	ENSMUSG00000034683	Ppp1r1c	4930565M23Rik|4930579P15Rik	protein phosphatase 1, regulatory (inhibitor) subunit 1C	protein-coding	6.2025038096392	6.09568929987947	6.13138733310958	6.35498207852	5.85762399102226	5.63764169424107	5.89986909271912	6.24327740898762	-0.297088508455032	0.194712492138037	0.675060820845359
Merged-chr7-47051965-4	chr7	47051861	47052061	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026436, intron 1 of 2)	intron (NM_026436, intron 1 of 2)	1321.0	NM_026436	67893.0	Mm.27338	NM_026436	ENSMUSG00000010307	Tmem86a	1810054O13Rik|AI414959|AW742698	transmembrane protein 86A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31402839-4	chr14	31402671	31402871	+	965.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347585, intron 2 of 7)	MTD|LTR|ERVL-MaLR	14906.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-86524962-2	chr1	86524862	86525062	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1595.0	NR_153834	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55928995-3	chr19	55928894	55929094	+	883.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_138565, intron 15 of 15)	intron (NR_138565, intron 15 of 15)	33673.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166686000-2	chr2	166685900	166686100	+	553.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	27832.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-87954831-1	chr17	87954731	87954931	+	699.0	f0_balb.idr	Intergenic	ERVB4_2-LTR_MM|LTR|ERVK	-20219.0	NM_010830	17688.0	Mm.18210	NM_010830	ENSMUSG00000005370	Msh6	AU044881|AW550279|GTBP|Gtmbp	mutS homolog 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-45962100-2	chr13	45962000	45962200	+	857.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199304, intron 1 of 6)	intron (NM_001199304, intron 1 of 6)	2891.0	NM_001199304	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117707025-4	chr11	117706920	117707120	+	967.44165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198022, intron 3 of 21)	MTC|LTR|ERVL-MaLR	52731.0	NM_198022	217351.0	Mm.40272	NM_198022	ENSMUSG00000025571	Tnrc6c	9930033H14Rik|mKIAA1582	trinucleotide repeat containing 6C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117806881-2	chr10	117806791	117806991	+	975.4500119999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-14186.0	NM_134010	103468.0	Mm.12568	NM_134010	ENSMUSG00000052798	Nup107	AW541137|C76801	nucleoporin 107	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-75689050-2	chr2	75688950	75689150	+	551.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010902, intron 1 of 4)	B3|SINE|B2	15613.0	NR_132727	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-110806571-2	chr12	110806471	110806671	+	614.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34368.0	NM_011973	26448.0	Mm.140948	NM_011973	ENSMUSG00000056458	Mok	RAGE1|Rage|Stk30	MOK protein kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-10842364-4	chr17	10842257	10842457	+	999.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001317726, intron 1 of 6)	intron (NM_001317726, intron 1 of 6)	1998.0	NM_016694	50873.0	Mm.311110	NM_016694	ENSMUSG00000023826	Park2	PRKN	Parkinson disease (autosomal recessive, juvenile) 2, parkin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120694354-2	chr8	120694254	120694454	+	855.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26034.0	NM_001293559	12857.0	Mm.386758	NM_009941	ENSMUSG00000031818	Cox4i1	AL024441|COX|COX IV-1|COXIV|Cox4|Cox4a|IV-1	cytochrome c oxidase subunit 4I1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118398438-2	chr11	118398338	118398538	+	967.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_011150, exon 3 of 6)	exon (NM_011150, exon 3 of 6)	3521.0	NM_011150	19039.0	Mm.3152	NM_011150	ENSMUSG00000033880	Lgals3bp	90K|CyCAP|MAC-2BP|Ppicap|Tango10b	lectin, galactoside-binding, soluble, 3 binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-119047016-7	chr2	119046888	119047088	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029617)	promoter-TSS (NM_029617)	-131.0	NM_029617	76464.0	Mm.202518	NM_029617	ENSMUSG00000027326	Knl1	2310043D08Rik|5730505K17Rik|Casc5	kinetochore scaffold 1	protein-coding	5.79768836827308	4.88379845794024	5.63539012542697	5.34114120883878	5.35023814928972	5.77978028393183	5.64620243578555	5.57639196647132	0.142452308419193	0.618594528354874	0.97802387128197
Merged-chr1-171839709-4	chr1	171839598	171839798	+	875.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252472)	promoter-TSS (NM_001252472)	1.0	NM_013489	12523.0	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	3.10297972601731	1.80062070555048	3.46970458564291	3.1841898063661	3.85933673046999	3.93376748652692	4.47849263682052	3.93697931410293	1.55947833915039	0.00668937078944696	0.0824196765444214
Merged-chr4-53229579-2	chr4	53229479	53229679	+	695.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	-16617.0	NR_040665	78180.0	Mm.243847	NR_040665	ENSMUSG00000086947	4930522O17Rik	-	RIKEN cDNA 4930522O17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-60178617-4	chr13	60178504	60178704	+	875.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1069.0	NM_008086	14451.0	Mm.22701	NM_008086	ENSMUSG00000052957	Gas1	AW554192|Gas-1	growth arrest specific 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-61393743-3	chr3	61393649	61393849	+	633.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29242.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-78014925-4	chr18	78014870	78015070	+	890.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195633, intron 32 of 43)	intron (NM_001195633, intron 32 of 43)	42298.0	NM_001101038	620235.0	Mm.35607	NM_001101038	ENSMUSG00000091055	Siglec15	Cd33l3|EG620235|SIGLEC-I	sialic acid binding Ig-like lectin 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80038307-2	chr10	80038207	80038407	+	904.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025554, intron 2 of 6)	intron (NM_025554, intron 2 of 6)	1352.0	NM_025554	66420.0	Mm.18579	NM_025554	ENSMUSG00000004667	Polr2e	2410021N14Rik|25kDa|AW208866|RPB5|XAP4	polymerase (RNA) II (DNA directed) polypeptide E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-24938812-3	chr8	24938716	24938916	+	964.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153397, intron 1 of 21)	MTD|LTR|ERVL-MaLR	9988.0	NM_001293693	353188.0	Mm.269223	NM_153397	ENSMUSG00000037437	Adam32	-	a disintegrin and metallopeptidase domain 32	protein-coding	2.405460655405	1.22366472732205	1.98720141379124	2.87476849158311	1.13271275827034	1.72847366260317	2.13863903914818	2.29039204197635	-0.872803105043849	0.415726167916142	0.896676881011847
Merged-chr11-72697497-4	chr11	72697407	72697607	+	766.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009671, intron 1 of 24)	ORR1E|LTR|ERVL-MaLR	7505.0	NM_009671	11736.0	Mm.10313	NM_009671	ENSMUSG00000020790	Ankfy1	Ankhzn|ZFYVE14|mKIAA1255	ankyrin repeat and FYVE domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-54802407-2	chr1	54802307	54802507	+	575.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081433, intron 2 of 27)	intron (NM_001081433, intron 2 of 27)	123980.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-27757038-2	chr5	27756938	27757138	+	697.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_018878, intron 12 of 20)	intron (NM_018878, intron 12 of 20)	34512.0	NM_018878	55982.0	Mm.277190	NM_018878	ENSMUSG00000002221	Paxip1	D5Ertd149e|PTIP	PAX interacting (with transcription-activation domain) protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83572503-4	chr6	83572386	83572586	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024239)	promoter-TSS (NM_024239)	18.0	NM_001362078	70527.0	Mm.32801	NM_024239	ENSMUSG00000006906	Stambp	5330424L14Rik|5730422L11Rik|AW107289|Amsh|mKIAA4198	STAM binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3629033-4	chr4	3628930	3629130	+	884.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27476.0	NR_040643	70143.0	Mm.417835	NR_040643	ENSMUSG00000085394	2210414B05Rik	-	RIKEN cDNA 2210414B05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30953575-4	chr7	30953488	30953688	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011680, intron 7 of 9)	intron (NM_011680, intron 7 of 9)	3215.0	NM_011680	22282.0	Mm.322453	NM_011680	ENSMUSG00000058239	Usf2	Usf-2|bHLHb12	upstream transcription factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-30949219-4	chr1	30949133	30949333	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011200, intron 1 of 5)	CpG	477.0	NR_002688	433406.0	Mm.389003	NR_002688		Gm13363	-	predicted gene 13363	pseudo	5.97006873792247	6.24163004017908	6.5647185528286	5.65570536565877	5.84007944943341	6.11042940498049	6.48820111503835	5.60614053122168	-0.107672026345657	0.688326143793843	0.996533206832645
Merged-chr2-102760546-4	chr2	102760413	102760613	+	819.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077514, intron 7 of 10)	intron (NM_001077514, intron 7 of 10)	-13753.0	NR_153853	102637542.0	Mm.371582	NR_153852		Gm13872	-	predicted gene 13872	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100991153-4	chr7	100991056	100991256	+	963.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20842.0	NM_001302347	18442.0	Mm.3000	NM_008773	ENSMUSG00000032860	P2ry2	P2U1|P2Y2	purinergic receptor P2Y, G-protein coupled 2	protein-coding	2.06031284666169	2.01523358698379	1.5195335040678	1.63379490044748	2.15614495523824	1.12526986265577	2.17213816310818	1.08395078926575	-0.192745799286124	0.867531834336501	0.998431161219273
Merged-chr2-24949637-4	chr2	24949510	24949710	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_147179)	promoter-TSS (NM_147179)	-167.0	NM_026021	67187.0	Mm.296106	NM_026021	ENSMUSG00000026974	Zmynd19	2700064H14Rik|AA536891|AU014915|mizip	zinc finger, MYND domain containing 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-118760025-3	chr2	118759925	118760125	+	783.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001982, intron 5 of 10)	intron (NM_001001982, intron 5 of 10)	2636.0	NM_001001982	214239.0	Mm.379342	NM_001001982	ENSMUSG00000045838	A430105I19Rik	Ccdc9b|Gm353	RIKEN cDNA A430105I19 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-11012280-2	chr8	11012180	11012380	+	611.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_046017, intron 1 of 4)	intron (NR_046017, intron 1 of 4)	-3850.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-90446999-3	chr3	90446901	90447101	+	663.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13365.0	NM_178876	229543.0	Mm.268564	NM_145540	ENSMUSG00000027933	Ints3	C77668	integrator complex subunit 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126750924-2	chr7	126750824	126751024	+	585.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-8702.0	NM_011952	26417.0	Mm.8385	NM_011952	ENSMUSG00000063065	Mapk3	Erk-1|Erk1|Ert2|Esrk1|Mnk1|Mtap2k|Prkm3|p44|p44erk1|p44mapk	mitogen-activated protein kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-76430116-4	chr5	76429996	76430196	+	927.962524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53981.0	NR_033501	639545.0	Mm.478255	NR_033501	ENSMUSG00000091204	Gm7271	EG639545	predicted gene 7271	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-58376939-4	chr3	58376841	58377041	+	884.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37779.0	NM_001081229	72033.0	Mm.218409	NM_001081229	ENSMUSG00000027806	Tsc22d2	1810043J12Rik|5530402M19Rik	TSC22 domain family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55594311-2	chr14	55594211	55594411	+	919.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_194346, exon 6 of 21)	exon (NM_194346, exon 6 of 21)	2569.0	NM_194346	268749.0	Mm.23748	NM_194346	ENSMUSG00000047098	Rnf31	AL033293|BC031509|Flj10111|HOIP|Paul|mFLJ00217	ring finger protein 31	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47219450-2	chr17	47219350	47219550	+	698.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001097623, intron 3 of 19)	B4|SINE|B4	-10780.0	NM_172622	224829.0	Mm.260989	NM_172622		Trerf1	9430096I18Rik|AI429294|B830015H24|RAPA|Trep-132|Trep132	transcriptional regulating factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-61494416-4	chr11	61494306	61494506	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291035)	promoter-TSS (NM_001291035)	-140.0	NM_001291034	23939.0	Mm.38172	NM_011841	ENSMUSG00000001034	Mapk7	BMK-1|BMK1|ERK-5|ERK5|Erk5-T|PRKM7|b2b2346Clo	mitogen-activated protein kinase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30677354-3	chr2	30677288	30677488	+	863.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_136917, intron 1 of 3)	intron (NR_136917, intron 1 of 3)	623.0	NR_136917	665635.0	Mm.450149	NR_136917		Gm14486	-	predicted gene 14486	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26499173-3	chr17	26499034	26499234	+	795.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	9338.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-4024923-4	chr15	4024824	4025024	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028266, intron 1 of 1)	intron (NR_028266, intron 1 of 1)	-1504.0	NM_024188	67041.0	Mm.13445	NM_024188	ENSMUSG00000022186	Oxct1	2610008O03Rik|Oxct|Oxct2a|Scot-s	3-oxoacid CoA transferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-8838446-4	chr17	8838339	8838539	+	929.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011866, intron 1 of 21)	intron (NM_011866, intron 1 of 21)	-11546.0	NM_001347321	23984.0	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-67759856-4	chr7	67759747	67759947	+	932.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_201639)	promoter-TSS (NM_201639)	-105.0	NM_207663	233335.0	Mm.60526	NM_183312	ENSMUSG00000030554	Synm	4930412K21Rik|AI852401|Dmn|E130104F11|Syn|Synemin	synemin, intermediate filament protein	protein-coding	4.25838535963801	3.79797876196523	3.47666028017666	4.00249411023352	4.55948768964222	4.71170967969048	3.94044659347021	4.57221408170081	0.735439853029229	0.0881983470746539	0.456910089897106
Merged-chr13-104937944-2	chr13	104937844	104938044	+	622.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74051.0	NM_029984	77803.0	Mm.159995	NM_029984	ENSMUSG00000042655	Fam159b	A930021C24Rik|Shisal2b	family with sequence similarity 159, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-25546332-3	chr15	25546218	25546418	+	664.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-76232.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-52294300-3	chr10	52294215	52294415	+	695.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025705, intron 5 of 10)	intron (NM_025705, intron 5 of 10)	60696.0	NM_025705	66686.0	Mm.62982	NM_025705	ENSMUSG00000019891	Dcbld1	4631413K11Rik	discoidin, CUB and LCCL domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-108986850-2	chr12	108986750	108986950	+	887.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177602, intron 3 of 6)	intron (NM_177602, intron 3 of 6)	81367.0	NM_001163175	380785.0	Mm.342085	NM_001163175	ENSMUSG00000040867	Begain	BM948371|Gm897	brain-enriched guanylate kinase-associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-46555518-3	chr17	46555428	46555628	+	897.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_020493, exon 1 of 7)	exon (NM_020493, exon 1 of 7)	634.0	NM_020493	20807.0	Mm.45044	NM_020493	ENSMUSG00000015605	Srf	AW049942|AW240594	serum response factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-55961438-2	chr17	55961338	55961538	+	610.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028381, intron 2 of 7)	ORR1C2|LTR|ERVL-MaLR	-2037.0	NR_108021	100504333.0	Mm.391908	NR_108021	ENSMUSG00000097077	Gm16712	-	predicted gene, 16712	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-54407676-3	chr12	54407571	54407771	+	848.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16353.0	NR_033689	665239.0	Mm.26856	NR_033689		Gm7550	EG665239|Gm666	predicted gene 7550	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-102829355-3	chr2	102829230	102829430	+	812.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039151, intron 5 of 8)	MERVL-int|LTR|ERVL	72335.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	1.21869995790065	1.83088369540856	0.891030214151992	1.7024531114692	0.851357487539163	2.07139640847465	0.895565265416723	2.09387568925101	0.491965319979615	0.714647754185655	0.998431161219273
Merged-chr6-29902502-3	chr6	29902406	29902606	+	903.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347084, intron 13 of 17)	intron (NM_001347084, intron 13 of 17)	-14507.0	NM_177204	320609.0	Mm.56097	NM_177204	ENSMUSG00000039629	Strip2	D330017J20Rik|Fam40b	striatin interacting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-77605487-4	chr10	77605385	77605585	+	971.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_125904)	promoter-TSS (NR_125904)	-612.0	NM_001301672	20610.0	Mm.24433	NM_019929	ENSMUSG00000020265	Sumo3	2810014B19Rik|D10Ertd345e|SMT3A|SUMO-3|Smt3h1	small ubiquitin-like modifier 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-125728602-2	chr8	125728502	125728702	+	777.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5601.0	NM_025636	66566.0	Mm.25296	NM_025636	ENSMUSG00000031851	Ntpcr	2310079N02Rik|AI449709	nucleoside-triphosphatase, cancer-related	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-64058393-3	chr15	64058333	64058533	+	670.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360037, intron 1 of 11)	intron (NM_001360037, intron 1 of 11)	1331.0	NM_001360038	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-29889172-3	chr2	29889072	29889272	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177661)	promoter-TSS (NM_001177661)	158.0	NM_001355137	18286.0	Mm.330116	NM_013615	ENSMUSG00000026790	Odf2	AI848335|MMTEST29	outer dense fiber of sperm tails 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91280154-3	chr2	91280037	91280237	+	879.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175123, intron 7 of 8)	intron (NM_175123, intron 7 of 8)	15022.0	NM_023854	77038.0	Mm.43636	NM_023854	ENSMUSG00000027255	Arfgap2	2310032E02Rik|Zfp289	ADP-ribosylation factor GTPase activating protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-51865971-4	chr12	51865874	51866074	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36438.0	NM_144788	207304.0	Mm.249391	NM_144788	ENSMUSG00000035247	Hectd1	A630086P08Rik|AI844876|b2b327Clo|opm	HECT domain E3 ubiquitin protein ligase 1	protein-coding	5.66168314655841	5.54082166342357	5.61058201912037	6.32098649885539	5.81111411850106	5.78217765540565	5.31710955202581	5.87100906970435	-0.124003603831177	0.650534597981571	0.985718277077717
Merged-chr13-74192796-3	chr13	74192698	74192898	+	681.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177333, exon 4 of 13)	exon (NM_177333, exon 4 of 13)	15902.0	NM_177333	211446.0	Mm.261859	NM_177333	ENSMUSG00000034152	Exoc3	2810050O03Rik|E430013E20Rik|Sec6|Sec6l1	exocyst complex component 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-140789104-1	chr4	140789004	140789204	+	579.0	f1_balb.idr	intron (NM_011060, intron 14 of 15)	intron (NM_011060, intron 14 of 15)	-14901.0	NM_011061	18602.0	Mm.250358	NM_011061	ENSMUSG00000025330	Padi4	Pad4|Pdi4	peptidyl arginine deiminase, type IV	protein-coding	3.24729079478093	2.41988131996011	2.18572279676969	2.90383805899237	2.41932564637327	2.27489852330036	2.61834609733826	2.74481950815041	-0.490862723232766	0.515470755427658	0.947402641287243
Merged-chr6-87851131-4	chr6	87851086	87851286	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013493)	promoter-TSS (NM_013493)	-80.0	NM_001355195	12785.0	Mm.290251	NM_013493	ENSMUSG00000030057	Cnbp	AA408710|Cnbp1|Znf9	cellular nucleic acid binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-52500718-2	chr3	52500618	52500818	+	912.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16246.0	NR_153344	102631981.0	Mm.394225	NR_153344		Gm30173	-	predicted gene, 30173	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-42910628-4	chr17	42910523	42910723	+	958.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-34199.0	NM_009847	12488.0	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-84236476-2	chr15	84236376	84236576	+	652.6999509999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_133167, intron 1 of 12)	intron (NM_133167, intron 1 of 12)	4433.0	NM_133167	170736.0	Mm.323892	NM_133167	ENSMUSG00000022438	Parvb	AI595373|AW742462|D15Gsk1|affixin	parvin, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91213461-2	chr2	91213361	91213561	+	610.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007387, exon 11 of 11)	3' UTR (NM_007387, exon 11 of 11)	10549.0	NM_007387	11432.0	Mm.45570	NM_007387	ENSMUSG00000002103	Acp2	Acp-2|LAP	acid phosphatase 2, lysosomal	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-53893237-4	chr10	53893134	53893334	+	978.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	-142325.0	NM_001081428	75906.0	Mm.436785	NM_001081428	ENSMUSG00000019856	Fam184a	3110012E06Rik|4930438C08Rik|4930589M24Rik	family with sequence similarity 184, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-145588587-3	chr2	145588495	145588695	+	748.200012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053195, intron 7 of 16)	intron (NM_053195, intron 7 of 16)	-33613.0	NM_001037929	627302.0	Mm.445953	NM_001037929		Gm14092	-	predicted gene 14092	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-47510808-4	chr19	47510705	47510905	+	866.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175360, intron 7 of 9)	intron (NM_175360, intron 7 of 9)	-2177.0	NR_045322	100503104.0	Mm.442735	NR_045322	ENSMUSG00000097990	Gm19557	-	predicted gene, 19557	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-9246556-3	chr4	9246471	9246671	+	755.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR12A|LTR|ERVK	-22722.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-79049451-2	chr2	79049351	79049551	+	705.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	179773.0	NR_151457	22193.0	Mm.1485	NM_009454	ENSMUSG00000027011	Ube2e3	Ubce4|ubcM2	ubiquitin-conjugating enzyme E2E 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-144698157-4	chr3	144698060	144698260	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019464, intron 5 of 8)	intron (NM_019464, intron 5 of 8)	22175.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-35824705-4	chr12	35824625	35824825	+	875.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-100896.0	NM_207531	403205.0	Mm.190508	NM_207531	ENSMUSG00000036231	Agr3	BCMP11|E030025L21Rik|Gm888	anterior gradient 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97187155-4	chr11	97187060	97187260	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008379, intron 2 of 21)	CpG	732.0	NM_008379	16211.0	Mm.251013	NM_008379	ENSMUSG00000001440	Kpnb1	AA409963|IPOB|Impnb	karyopherin (importin) beta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3861890-4	chr12	3861787	3861987	+	951.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045884, exon 2 of 4)	non-coding (NR_045884, exon 2 of 4)	357.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-141055157-2	chr5	141055057	141055257	+	674.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54561.0	NM_175362	108723.0	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-23873052-3	chr5	23872931	23873131	+	591.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16C|LTR|ERVL	20798.0	NR_028536	100217436.0		NR_028536		Snord93	Gm22397|MBII-336	small nucleolar RNA, C/D box 93	snoRNA	1.23821297519441	0.829254205993892	1.59615814425103	0.803305579583095	1.64634082143951	1.67599229500941	1.49420926962877	0.805312453836232	1.07017976290962	0.448156602712559	0.914944334739028
Merged-chr12-52300700-1	chr12	52300600	52300800	+	672.0	f1_balb.idr	intron (NM_029760, intron 8 of 10)	intron (NM_029760, intron 8 of 10)	179909.0	NR_136881	102638611.0	Mm.363799	NR_136881	ENSMUSG00000111982	Gm35135	-	predicted gene, 35135	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-110266148-4	chr8	110266090	110266290	+	856.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172916)	promoter-TSS (NM_172916)	-787.0	NM_172916	244653.0	Mm.444803	NM_172916	ENSMUSG00000059854	Hydin	1700034M11Rik|4930545D19Rik|4932703P14|672398|A830061H17|AC069308.21gm4|Gm9558|hy-3|hy3|hyrh	HYDIN, axonemal central pair apparatus protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-32982850-3	chr4	32982786	32982986	+	906.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027491)	promoter-TSS (NM_027491)	-112.0	NM_027491	52187.0	Mm.300814	NM_027491	ENSMUSG00000028278	Rragd	5730543C08Rik|AI467523|C030003H22Rik|D4Ertd174e	Ras-related GTP binding D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106759220-4	chr11	106759098	106759298	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_073165, intron 4 of 9)	intron (NR_073165, intron 4 of 9)	7972.0	NM_001033435	380732.0	Mm.343952	NM_001033435	ENSMUSG00000040528	Milr1	Allergin-1|Gm885|Mca32	mast cell immunoglobulin like receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-67233197-2	chr14	67232926	67233126	+	570.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001276387)	promoter-TSS (NM_001276387)	-266.0	NM_010095	13592.0	Mm.319947	NM_010095	ENSMUSG00000022053	Ebf2	D14Ggc1e|EBF-2|Mmot1|O/E-3|OE-3	early B cell factor 2	protein-coding	-1.84325445856195	-1.66978859456726	-1.82223972418281	-1.82972291212587	-1.69779858607314	-1.8111556044277	-1.82017743014771	-1.82838342506187	0.037684011990387	0.991491645451152	1
Merged-chr16-19963185-4	chr16	19963097	19963297	+	864.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183390, intron 2 of 6)	Lx8|LINE|L1	19852.0	NM_183390	239743.0	Mm.86699	NM_183390	ENSMUSG00000043008	Klhl6	-	kelch-like 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-70964959-2	chr17	70964859	70965059	+	580.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25557.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-6656034-4	chr17	6655975	6656175	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199948)	promoter-TSS (NM_001199948)	-136.0	NM_001166627	100040531.0	Mm.457987	NM_001166627	ENSMUSG00000095677	Dynlt1f	100040631|Dynlt1e	dynein light chain Tctex-type 1F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69424083-4	chr11	69423978	69424178	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081330, intron 77 of 85)	intron (NM_001081330, intron 77 of 85)	-10403.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	4.42315045621134	5.06521955211817	4.4310083767929	4.75833798008605	4.41547987272396	4.30276327973591	4.40875542275245	4.48470225637327	-0.358351829663644	0.333474186903752	0.833601405219443
Merged-chr2-4500205-2	chr2	4500105	4500305	+	549.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 5 of 23)	intron (NM_001177843, intron 5 of 23)	-59549.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-150980134-2	chr2	150980034	150980234	+	578.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_207204, exon 2 of 24)	exon (NM_207204, exon 2 of 24)	29264.0	NM_207204	78177.0	Mm.120911	NM_207204	ENSMUSG00000068115	Ninl	4930519N13Rik|Gm1004|Gm1634|mKIAA0980	ninein-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-74409352-2	chr1	74409252	74409452	+	661.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009509)	promoter-TSS (NM_009509)	-32.0	NM_009509	22349.0	Mm.471601	NM_009509	ENSMUSG00000026175	Vil1	Vil	villin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-49206503-2	chr13	49206403	49206603	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026738, intron 2 of 5)	intron (NM_026738, intron 2 of 5)	9523.0	NM_026738	68480.0	Mm.3336	NM_026738	ENSMUSG00000037960	Card19	1110007C09Rik|AI851695|Bincard	caspase recruitment domain family, member 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-63425649-1	chr2	63425549	63425749	+	1000.0	f1_balb.idr	Intergenic	L1_Mus1|LINE|L1	149639.0	NR_152174	667257.0	Mm.417007	NR_152174		Gm8541	EG667257	predicted gene 8541	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-54979325-1	chr18	54979225	54979425	+	723.5	f0_balb.idr	intron (NM_175751, intron 2 of 9)	intron (NM_175751, intron 2 of 9)	10855.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-14011999-2	chr14	14011899	14012099	+	730.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_139227)	promoter-TSS (NM_139227)	-492.0	NM_139227	246103.0	Mm.133625	NM_139227	ENSMUSG00000021738	Atxn7	A430107N12Rik|AI627028|Sca7|ataxin-7	ataxin 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-72723596-4	chr5	72723484	72723684	+	951.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289494, intron 5 of 13)	intron (NM_001289494, intron 5 of 13)	13018.0	NM_013698	22165.0	Mm.3264	NM_013698	ENSMUSG00000054892	Txk	A130089B16Rik|Btkl|PTK-RL-18|PTK4|Rlk	TXK tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-20179238-3	chr14	20179131	20179331	+	570.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021542, intron 1 of 4)	intron (NM_021542, intron 1 of 4)	2551.0	NM_021542	16529.0	Mm.68998	NM_021542	ENSMUSG00000023243	Kcnk5	KCNK5b|TASK-2	potassium channel, subfamily K, member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-63828264-2	chr11	63828164	63828364	+	578.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	94020.0	NM_018805	54710.0	Mm.274426	NM_018805	ENSMUSG00000070407	Hs3st3b1	3-OST-3B|3OST3B1|3Ost3b|AU041882|AW536289|Hs3st3b|m3-OST-3B	heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-114654774-4	chr2	114654696	114654896	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025675, intron 1 of 8)	CpG	168.0	NM_001356438	66632.0	Mm.117809	NM_025675	ENSMUSG00000057147	Dph6	5730421E18Rik|Atpbd4	diphthamine biosynthesis 6	protein-coding	4.77464338618143	5.28378446868521	4.7823307904924	3.75729134105761	5.30689659403119	4.92189549275493	5.62013711148497	4.49212833989603	0.484501140759466	0.220089865794538	0.711251089011368
Merged-chr17-70985710-4	chr17	70985601	70985801	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023402, intron 1 of 3)	intron (NM_023402, intron 1 of 3)	4815.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-17323751-2	chr4	17323651	17323851	+	606.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-529142.0	NR_135158	17389.0	Mm.187315	NM_019724	ENSMUSG00000028226	Mmp16	MT-MMP 3|MT3-MMP|Mt3mmp	matrix metallopeptidase 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-100437599-2	chr3	100437499	100437699	+	686.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040543, exon 3 of 3)	non-coding (NR_040543, exon 3 of 3)	11194.0	NR_040543	73806.0	Mm.396549	NR_040543	ENSMUSG00000086923	4930406D18Rik	-	RIKEN cDNA 4930406D18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-59368318-4	chr4	59368202	59368402	+	927.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163288, intron 9 of 16)	intron (NM_001163288, intron 9 of 16)	70331.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	1.67130567000327	1.04483237922781	1.67632395680654	2.02247817619556	0.959180335178369	1.75601401345466	3.00673366056422	1.63313483613131	1.08751541812344	0.3458217575216	0.846769274845747
Merged-chr18-75599237-4	chr18	75599200	75599400	+	660.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201354, intron 6 of 11)	intron (NM_201354, intron 6 of 11)	84655.0	NR_045879	100038353.0	Mm.440724	NR_045879	ENSMUSG00000097712	Gm10532	-	predicted gene 10532	ncRNA	1.14399225706881	1.04397071773663	1.46118227649866	1.21726485451263	0.799606565997829	0.880859900096416	0.663381405081753	0.83232479252027	-2.38478021836967	0.102286966998307	0.49752933650501
Merged-chr13-113434855-2	chr13	113434755	113434955	+	856.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	67989.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-74024207-2	chr17	74024107	74024307	+	836.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_053188, intron 3 of 4)	ID_B1|SINE|B4	23709.0	NM_053188	94224.0	Mm.38933	NM_053188	ENSMUSG00000038541	Srd5a2	5ART2|S5AR 2	steroid 5 alpha-reductase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-69211807-4	chr10	69211719	69211919	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081347)	promoter-TSS (NM_001081347)	-838.0	NM_001081347	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-103719431-4	chr14	103719331	103719531	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19999.0	NR_045148	70898.0	Mm.27548	NR_045148	ENSMUSG00000089707	Slain1os	4921525B02Rik	SLAIN motif family, member 1, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-151074994-2	chr1	151074894	151075094	+	992.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63040.0	NR_038011	402734.0	Mm.337666	NR_038011		C730036E19Rik	lncLSTR	RIKEN cDNA C730036E19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-77933970-4	chr15	77933859	77934059	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4965.0	NM_019913	56551.0	Mm.291917	NM_019913	ENSMUSG00000005354	Txn2	2510006J11Rik|AI788873|Trx2	thioredoxin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35314743-2	chr17	35314643	35314843	+	999.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MYSERV6-int|LTR|ERVK	-5804.0	NM_010390	15006.0	Mm.466882	NM_010390	ENSMUSG00000079507	H2-Q1	H-2Q1|Q1|Q1b|Q1d|Q1k|Qa-1|Qa1|Qed-1	histocompatibility 2, Q region locus 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-102991994-2	chr11	102991894	102992094	+	743.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7927.0	NR_105896	102466988.0		NR_105896	ENSMUSG00000098613	Mir6931	Gm27303|mmu-mir-6931	microRNA 6931	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-50189613-6	chr17	50189600	50189800	+	851.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181397, intron 1 of 9)	intron (NM_181397, intron 1 of 9)	797.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-72033089-3	chr8	72032978	72033178	+	807.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPEY4_LTR|LTR|ERVK	-23452.0	NM_024444	72054.0	Mm.160020	NM_024444	ENSMUSG00000003484	Cyp4f18	1810054N16Rik|Cyp4f3|Cypf18	cytochrome P450, family 4, subfamily f, polypeptide 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-80391898-4	chr17	80391795	80391995	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18353.0	NR_028385	791338.0	Mm.204722	NR_028385		Gm10190	-	predicted gene 10190	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-121229151-4	chr11	121229052	121229252	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001254735)	promoter-TSS (NM_001254735)	157.0	NM_144832	217370.0	Mm.27182	NM_144832	ENSMUSG00000039294	BC017643	-	cDNA sequence BC017643	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27304270-2	chr2	27304170	27304370	+	765.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_133905, intron 3 of 29)	intron (NR_133905, intron 3 of 29)	-56967.0	NM_138665	192166.0	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-153571645-11	chr3	153571535	153571735	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011372, intron 1 of 4)	intron (NM_011372, intron 1 of 4)	153498.0	NM_011372	20447.0	Mm.296453	NM_011372	ENSMUSG00000052544	St6galnac3	Siat7c	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-21994235-2	chr13	21994135	21994335	+	709.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	tRNA-Ser-AGY|tRNA|tRNA	13041.0	NM_001162929	195236.0	Mm.204664	NM_001162928	ENSMUSG00000016982	Pom121l2	Gm24	POM121 membrane glycoprotein-like 2 (rat)	protein-coding	-0.830356650690491	-0.816345487784543	-0.820864282505992	-0.824381175130209	-0.829456510389805	-0.815160754889565	-0.819869816454248	0.181663512156448	4.00589950645271	0.136956758805186	1
Merged-chr12-86946218-2	chr12	86946118	86946318	+	833.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289430)	promoter-TSS (NM_001289430)	-823.0	NM_001289431	217732.0	Mm.22337	NM_173735	ENSMUSG00000034157	Cipc	2310044G17Rik|AI842544|AI853744|Kiaa1737|mKIAA1737	CLOCK interacting protein, circadian	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91618998-4	chr16	91618914	91619114	+	941.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138664)	promoter-TSS (NM_138664)	-15.0	NM_138664	246738.0	Mm.101927	NM_138664	ENSMUSG00000039763	Dnajc28	BC020175|ORF28	DnaJ heat shock protein family (Hsp40) member C28	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-137331101-4	chr5	137330987	137331187	+	921.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359611, intron 4 of 14)	intron (NM_001359611, intron 4 of 14)	2495.0	NM_031406	83704.0	Mm.235625	NM_031406	ENSMUSG00000037344	Slc12a9	CIP1	solute carrier family 12 (potassium/chloride transporters), member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-38197450-3	chr16	38197338	38197538	+	666.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347232, intron 7 of 11)	intron (NM_001347232, intron 7 of 11)	97386.0	NM_010936	18171.0	Mm.8509	NM_010936	ENSMUSG00000022809	Nr1i2	PXR|PXR.1|PXR.2|PXR1|SXR|mPXR	nuclear receptor subfamily 1, group I, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-118495063-2	chr7	118495021	118495221	+	755.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3146.0	NM_001033380	319622.0	Mm.323386	NM_001033380	ENSMUSG00000095115	Itpripl2	C130081G24|E030018N11Rik	inositol 1,4,5-triphosphate receptor interacting protein-like 2	protein-coding	1.27357266246394	1.41583367703961	2.50276404442558	2.90484080291995	2.84907399743024	3.27247859507205	2.2489059751193	2.83913384885439	1.23870767159646	0.178777195387296	0.649334648917287
Merged-chr17-36273825-2	chr17	36273725	36273925	+	758.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-1821.0	NM_024468	79263.0	Mm.40624	NM_024468	ENSMUSG00000045409	Trim39	1100001D15Rik|E130103K13Rik|RBCC-B30.2|Rnf23|mKIAA4179|tfp	tripartite motif-containing 39	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-18707133-2	chr15	18707033	18707233	+	547.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MMERVK9C_I-int|LTR|ERVK	-111814.0	NM_001316758	320873.0	Mm.117794	NM_009865	ENSMUSG00000022321	Cdh10	A830016G23Rik|C030003B10Rik|C030011H18Rik	cadherin 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-24481804-4	chr1	24481705	24481905	+	860.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007733, intron 11 of 50)	intron (NM_007733, intron 11 of 50)	105632.0	NM_007733	12823.0	Mm.329196	NM_007733	ENSMUSG00000026141	Col19a1	-	collagen, type XIX, alpha 1	protein-coding	2.42580144247981	1.29153851994085	2.37102551785913	1.47154568802836	2.44629300602368	1.77417055129707	2.4858706453778	1.97576169018479	0.495916679123988	0.619829426785082	0.978663311075481
Merged-chr10-54117971-4	chr10	54117878	54118078	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42056.0	NR_038016	100502920.0	Mm.403982	NR_038016	ENSMUSG00000097069	Gm16998	-	predicted gene, 16998	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135264748-2	chr5	135264648	135264848	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13701.0	NM_010246	14371.0	Mm.6256	NM_010246	ENSMUSG00000049551	Fzd9	mfz9	frizzled class receptor 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-67173173-4	chr13	67173080	67173280	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001013769)	promoter-TSS (NM_001013769)	-2.0	NM_001013769	380855.0	Mm.284988	NM_001013769	ENSMUSG00000058900	Rsl1	rslcan-9	regulator of sex limited protein 1	protein-coding	6.27318678815815	5.71862711702575	6.18923294051186	6.05324197142857	5.69932689382626	5.72578609122725	5.0127882171167	5.20344041083526	-0.707428846865638	0.00813337239266432	0.0938911500646438
Merged-chr5-112278973-2	chr5	112278873	112279073	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001326590, intron 1 of 5)	PB1D9|SINE|Alu	2282.0	NM_009419	22022.0	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-89704507-3	chr9	89704419	89704619	+	905.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025360, intron 1 of 2)	intron (NM_025360, intron 1 of 2)	524.0	NM_025360	66111.0	Mm.27606	NM_025360	ENSMUSG00000032353	Tmed3	1200002G13Rik|AW546672|P24b	transmembrane p24 trafficking protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5957618-2	chr19	5957518	5957718	+	603.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164057, intron 4 of 17)	B1_Mur3|SINE|Alu	6588.0	NM_001164057	18969.0	Mm.209931	NM_008893	ENSMUSG00000024833	Pola2	AI573378	polymerase (DNA directed), alpha 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-120709443-3	chr9	120709358	120709558	+	863.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	132127.0	NR_073359	76100.0	Mm.48212	NR_073359	ENSMUSG00000052658	5830454E08Rik	-	RIKEN cDNA 5830454E08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-23039154-4	chr2	23039022	23039222	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077190, intron 1 of 10)	intron (NM_001077190, intron 1 of 10)	1119.0	NM_001077192	11308.0	Mm.205647	NM_007380	ENSMUSG00000058835	Abi1	E3B1|NAP1|Ssh3bp1|abi-1	abl-interactor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-50322073-2	chr16	50321973	50322173	+	747.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347240, intron 3 of 16)	intron (NM_001347240, intron 3 of 16)	110316.0	NM_027444	70508.0	Mm.28940	NM_027444	ENSMUSG00000022641	Bbx	5530401J07Rik|5730403O13Rik	bobby sox HMG box containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128491739-2	chr10	128491639	128491839	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001317218, exon 6 of 7)	exon (NM_001317218, exon 6 of 7)	1270.0	NM_001317220	17904.0	Mm.337074	NM_010860	ENSMUSG00000090841	Myl6	ESMLC|LC17|LC17-GI|MLC-3|MLC1SM|Myln	myosin, light polypeptide 6, alkali, smooth muscle and non-muscle	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-116976009-4	chr2	116975880	116976080	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	75828.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-104373914-2	chr8	104373791	104373991	+	818.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_153582, intron 1 of 3)	RSINE1|SINE|B4	21916.0	NM_153582	97487.0	Mm.29658	NM_153582	ENSMUSG00000096188	Cmtm4	Cklfsf4|D19397|Gm9853	CKLF-like MARVEL transmembrane domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-10469340-2	chr15	10469240	10469440	+	747.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030046, intron 1 of 11)	A-rich|Low_complexity|Low_complexity	1176.0	NM_030046	78244.0	Mm.297862	NM_030046	ENSMUSG00000044224	Dnajc21	4930461P20Rik|9930116P15Rik	DnaJ heat shock protein family (Hsp40) member C21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35173531-4	chr17	35173455	35173655	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019467, intron 1 of 7)	intron (NM_019467, intron 1 of 7)	2497.0	NM_019467	11629.0	Mm.10747	NM_019467	ENSMUSG00000024397	Aif1	AI607846|AIF-1|D17H6S50E|G1|Iba1	allograft inflammatory factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-59011711-4	chr13	59011623	59011823	+	996.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025074, intron 13 of 17)	intron (NM_001025074, intron 13 of 17)	204026.0	NM_001025074	18212.0	Mm.130054	NM_008745	ENSMUSG00000055254	Ntrk2	GP145-TrkB/GP95-TrkB|Tkrb|trk-B|trkB	neurotrophic tyrosine kinase, receptor, type 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55218609-4	chr19	55218552	55218752	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081076, intron 12 of 20)	intron (NM_001081076, intron 12 of 20)	22584.0	NM_001081076	73707.0	Mm.489987	NM_001081076	ENSMUSG00000055523	Gucy2g	2410077I05Rik|GC-G	guanylate cyclase 2g	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-55470617-2	chr13	55470517	55470717	+	923.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001030296, intron 1 of 2)	intron (NM_001030296, intron 1 of 2)	6350.0	NM_001030296	432763.0	Mm.315457	NM_001030296	ENSMUSG00000034686	Prr7	XM_484263	proline rich 7 (synaptic)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-15829650-3	chr17	15829566	15829766	+	711.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3080.0	NM_178615	68799.0	Mm.293466	NM_178615	ENSMUSG00000048027	Rgmb	1110059F19Rik|DRAGON	repulsive guidance molecule family member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-116144554-4	chr4	116144436	116144636	+	934.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026547)	promoter-TSS (NM_026547)	80.0	NM_026547	68075.0	Mm.132803	NM_026547	ENSMUSG00000028701	Lurap1	1520402A15Rik|Lrp35a	leucine rich adaptor protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-10309349-2	chr17	10309249	10309449	+	607.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021881, intron 1 of 6)	intron (NM_021881, intron 1 of 6)	10012.0	NM_021881	19317.0	Mm.130694	NM_021881	ENSMUSG00000062078	Qk	1110003F05Rik|1500005P18|QkI|l(17)-1Wis|l17Wis1	quaking	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-39854045-3	chr18	39853945	39854145	+	736.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	80548.0	NM_011033	18459.0	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	1.10447035912173	1.52211741994304	1.16721557853627	1.54956874763478	1.37424909647509	1.66516728541053	1.48305069163472	1.5576014327108	0.660514943491543	0.567807289173047	0.962562732139494
Merged-chr2-172438949-2	chr2	172438849	172439049	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1629.0	NM_025542	66404.0	Mm.25157	NM_025542	ENSMUSG00000027502	Rtf2	1700067C04Rik|2410001C21Rik|5730427M17Rik|AA589417|Rtfdc1	replication termination factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-63942959-2	chr7	63942865	63943065	+	629.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4050.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	1.3931543865706	0.916775697279573	0.893234883646634	2.05927002926084	1.40629573502651	2.63400432733186	1.54192334440502	1.12107196437212	1.13192722744853	0.36212994949548	0.8580597646541
Merged-chr7-115076966-1	chr7	115076866	115077066	+	856.5	f0_balb.idr	Intergenic	RCHARR1|DNA|hAT-Charlie	125692.0	NR_040319	101786.0	Mm.395157	NR_040317	ENSMUSG00000108379	A730082K24Rik	AU044236	RIKEN cDNA A730082K24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167713301-7	chr2	167713209	167713409	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(GA)n|Simple_repeat|Simple_repeat	22132.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-93066434-1	chr6	93066334	93066534	+	889.0	f0_balb.idr	intron (NR_015530, intron 1 of 2)	intron (NR_015530, intron 1 of 2)	125852.0	NR_015530	330385.0	Mm.483472	NR_015530	ENSMUSG00000097462	9530026P05Rik	B430306B02	RIKEN cDNA 9530026P05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64377924-4	chr5	64377823	64378023	+	838.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	90019.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141328822-2	chr7	141328722	141328922	+	816.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027797, intron 1 of 5)	intron (NM_027797, intron 1 of 5)	692.0	NM_027797	71448.0	Mm.248960	NM_027797	ENSMUSG00000025505	Tmem80	5530601I19Rik	transmembrane protein 80	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-31456754-2	chr15	31456654	31456854	+	660.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172606, exon 26 of 26)	3' UTR (NM_172606, exon 26 of 26)	-3065.0	NM_145852	252967.0	Mm.436668	NM_145852	ENSMUSG00000022236	Ropn1l	ASP|AV047578|Akapasp	ropporin 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-36792791-4	chr19	36792691	36792891	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41441.0	NM_001163635	74493.0	Mm.249310	NM_001163635	ENSMUSG00000024811	Tnks2	5430432P15Rik|AA517131|AI662480|ARTD6|TNKS-2|Tank2	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-26387360-4	chr11	26387291	26387491	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001277273, intron 1 of 13)	CpG	307.0	NR_102382	67030.0	Mm.18875	NM_025923	ENSMUSG00000004018	Fancl	2010322C19Rik|AW554273|B230118H11Rik|Phf9|Pog|gcd	Fanconi anemia, complementation group L	protein-coding	6.31494479977763	6.39105343298449	6.54757875062129	5.43258625486781	6.29159924525714	4.95018800209634	6.17179867176847	4.91813106143713	-0.54240206868099	0.109313252187785	0.518281641040431
Merged-chr6-43404657-3	chr6	43404567	43404767	+	914.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013861, intron 8 of 8)	intron (NM_013861, intron 8 of 8)	-37762.0	NR_045988	319812.0	Mm.446393	NR_045988		9430018G01Rik	-	RIKEN cDNA 9430018G01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-59296464-4	chr10	59296335	59296535	+	921.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26861.0	NM_001316371	18451.0	Mm.2212	NM_011030	ENSMUSG00000019916	P4ha1	AL022634|P4ha	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-21914706-4	chr13	21914613	21914813	+	907.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17664.0	NR_035500	100316716.0		NR_035500	ENSMUSG00000088148	Mir1983	mmu-mir-1983	microRNA 1983	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44457526-2	chr9	44457426	44457626	+	571.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2759.0	NM_009476	22269.0	Mm.4453	NM_009476	ENSMUSG00000041523	Upk2	AW491716|UPII	uroplakin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-27235459-2	chr3	27235359	27235559	+	933.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 3 of 4)	intron (NM_178772, intron 3 of 4)	52455.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-49240544-2	chr13	49240444	49240644	+	738.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_025491, exon 2 of 5)	exon (NM_025491, exon 2 of 5)	7750.0	NM_001360772	66329.0	Mm.34308	NM_025491	ENSMUSG00000021384	Susd3	1700017I11Rik|2810440J20Rik	sushi domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-86536046-4	chr17	86535927	86536127	+	866.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011104, intron 10 of 14)	intron (NM_011104, intron 10 of 14)	-217837.0	NM_010137	13819.0	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71636711-2	chr8	71636611	71636811	+	832.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001029873, intron 35 of 41)	intron (NM_001029873, intron 35 of 41)	-5605.0	NR_106035	102466799.0		NR_106035	ENSMUSG00000098976	Mir6769b	Gm27546|mmu-mir-6769b	microRNA 6769b	ncRNA	-0.543515425931773	-0.532338423475872	-0.536007277737466	-0.0104135737952068	0.0222678482477018	-0.531510478268859	-0.535198669256837	-0.538339841054658	0.122105013281897	0.965564048726009	1
Merged-chr5-100860847-4	chr5	100860747	100860947	+	963.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172715, intron 3 of 12)	intron (NM_172715, intron 3 of 12)	14618.0	NM_172715	231510.0	Mm.271911	NM_172715	ENSMUSG00000029314	Gpat3	1-AGPAT|1-AGPAT 9|4933407I02Rik|4933408F15|A230097K15Rik|Agpat9|GPAT-3|mGPAT3	glycerol-3-phosphate acyltransferase 3	protein-coding	3.03137201283748	3.76161779420199	3.71156139873236	2.86944405240115	3.45727179032277	4.33460458273389	3.50626954335967	3.31176099281871	0.481374757820516	0.393757134188381	0.882309644749821
Merged-chr11-120342895-2	chr11	120342795	120342995	+	723.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	4518.0	NR_105900	102465564.0		NR_105900	ENSMUSG00000098955	Mir6935	Gm27344|mmu-mir-6935	microRNA 6935	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-24709590-2	chr12	24709490	24709690	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009104, intron 4 of 9)	intron (NM_009104, intron 4 of 9)	1336.0	NM_009104	20135.0	Mm.99	NM_009104	ENSMUSG00000020649	Rrm2	AA407299|R2	ribonucleotide reductase M2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111071942-4	chr12	111071812	111072012	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198023, intron 2 of 11)	intron (NM_198023, intron 2 of 11)	32114.0	NM_198023	217864.0	Mm.23808	NM_198023	ENSMUSG00000037896	Rcor1	5730409O11|6720480E22Rik|AU042633|D12Wsu95e|Rocr1|mKIAA0071	REST corepressor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-76332300-3	chr16	76332218	76332418	+	892.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358238, intron 2 of 3)	intron (NM_001358238, intron 2 of 3)	40731.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-59837943-4	chr4	59837810	59838010	+	894.6749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172468, intron 1 of 8)	intron (NM_172468, intron 1 of 8)	32260.0	NM_172468	209131.0	Mm.259705	NM_172468	ENSMUSG00000028385	Snx30	4732481H14Rik|C030041J06Rik	sorting nexin family member 30	protein-coding	2.43740051158694	2.39782334081093	1.37740554197707	2.65953621471023	2.76591602954542	2.85421453794384	2.33435748470312	1.60184247282128	0.371479144846012	0.684741782612226	0.996533206832645
Merged-chr8-105516200-6	chr8	105516134	105516334	+	933.055542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2512.0	NM_008289	15484.0	Mm.5079	NM_008289	ENSMUSG00000031891	Hsd11b2	11HSD2	hydroxysteroid 11-beta dehydrogenase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-102520408-4	chr9	102520300	102520500	+	999.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024291, intron 3 of 10)	intron (NM_024291, intron 3 of 10)	14262.0	NM_024291	16716.0	Mm.101692	NM_024291	ENSMUSG00000035606	Ky	CD1|D9Mgc44e|ky	kyphoscoliosis peptidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-38353744-2	chr16	38353644	38353844	+	852.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001017429)	TTS (NM_001017429)	6745.0	NM_001017429	12856.0	Mm.27396	NM_001017429	ENSMUSG00000046516	Cox17	AI037035	cytochrome c oxidase assembly protein 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-154408064-4	chr2	154407975	154408175	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009228)	promoter-TSS (NM_009228)	9.0	NM_009228	20648.0	Mm.1541	NM_009228	ENSMUSG00000027488	Snta1	AW228934|Snt1	syntrophin, acidic 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-8134098-2	chr9	8133998	8134198	+	619.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001045524, exon 1 of 11)	exon (NM_001045524, exon 1 of 11)	196.0	NM_001045524	234915.0	Mm.101341	NM_001045524	ENSMUSG00000040729	Cep126	mKIAA1377	centrosomal protein 126	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-50409568-4	chr16	50409465	50409665	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027444, intron 2 of 16)	intron (NM_027444, intron 2 of 16)	22824.0	NM_027444	70508.0	Mm.28940	NM_027444	ENSMUSG00000022641	Bbx	5530401J07Rik|5730403O13Rik	bobby sox HMG box containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-29765301-4	chr17	29765198	29765398	+	961.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48281.0	NM_001163741	68597.0	Mm.390979	NM_026782	ENSMUSG00000024018	Ccdc167	1110021J02Rik	coiled-coil domain containing 167	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-62497279-1	chr3	62497179	62497379	+	614.0	f0_c57.idr	intron (NM_028136, intron 4 of 24)	MER2|DNA|TcMar-Tigger	9709.0	NM_028136	72162.0	Mm.224233	NM_028136	ENSMUSG00000027770	Dhx36	2810407E23Rik|AI452301|AU022184|Ddx36|mKIAA1488	DEAH (Asp-Glu-Ala-His) box polypeptide 36	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-8577005-1	chr11	8576905	8577105	+	559.0	f1_balb.idr	intron (NM_001083587, intron 4 of 30)	intron (NM_001083587, intron 4 of 30)	87530.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	1.18406272176775	0.627385552614457	0.618150393816197	1.05385326084083	1.28042515816413	0.629459517529796	1.10029172104179	1.0602283002683	0.673822675719467	0.668152298837381	1
Merged-chr4-128841245-2	chr4	128841145	128841345	+	606.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35133.0	NM_001081098	230761.0	Mm.22616	NM_001081098	ENSMUSG00000028799	Zfp362	-	zinc finger protein 362	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-29358914-2	chr11	29358814	29359014	+	750.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-15258.0	NM_176841	108686.0	Mm.338284	NM_176841	ENSMUSG00000032740	Ccdc88a	A430106J12Rik|AI848406|Ape|C130096N06Rik|C330012F17Rik|D130005J21Rik|Girdin|Giv|Grdn|Hkrp1	coiled coil domain containing 88A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-62785807-7	chr13	62785698	62785898	+	996.4285890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001256065)	promoter-TSS (NM_001256065)	10.0	NM_001256065	380850.0	Mm.439823	NM_001256065	ENSMUSG00000091183	Gm5141	-	predicted gene 5141	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-15171309-3	chr10	15171187	15171387	+	750.733337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	410998.0	NM_008703	18101.0	Mm.487342	NM_008703	ENSMUSG00000019865	Nmbr	BB182387	neuromedin B receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-26885530-4	chr8	26885433	26885633	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61110.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-122476206-6	chr14	122476202	122476402	+	858.2222289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009574, exon 1 of 3)	exon (NM_009574, exon 1 of 3)	918.0	NM_009574	22772.0	Mm.308936	NM_009574	ENSMUSG00000061524	Zic2	HPE5|Ku	zinc finger protein of the cerebellum 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-102867096-3	chr9	102866998	102867198	+	860.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042607, intron 2 of 14)	intron (NM_001042607, intron 2 of 14)	32178.0	NM_001284258	20187.0	Mm.335391	NM_013649	ENSMUSG00000032547	Ryk	AW536699|ERK-3|Vik	receptor-like tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-40991113-3	chr9	40991011	40991211	+	639.833313	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	intron (NM_019465, intron 3 of 9)	intron (NM_019465, intron 3 of 9)	13517.0	NM_019465	54698.0	Mm.42791	NM_019465	ENSMUSG00000032021	Crtam	-	cytotoxic and regulatory T cell molecule	protein-coding	2.26727460887488	2.29355669227718	1.34055624718403	1.07328489060434	1.84033927701185	1.78887438083293	1.09952485070964	2.48560687271441	0.0973220028422432	0.933245792621519	0.998431161219273
Merged-chr1-185329291-4	chr1	185329164	185329364	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_198653, exon 1 of 23)	exon (NM_198653, exon 1 of 23)	137.0	NM_198653	381314.0	Mm.275841	NM_198653	ENSMUSG00000026618	Iars2	2010002H18Rik|C79125	isoleucine-tRNA synthetase 2, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-58166961-4	chr2	58166868	58167068	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045895, intron 2 of 3)	intron (NR_045895, intron 2 of 3)	2994.0	NR_045895	100042926.0	Mm.446515	NR_045895	ENSMUSG00000086862	Gm13546	-	predicted gene 13546	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-160176314-4	chr2	160176271	160176471	+	823.479126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	151123.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70647107-4	chr11	70646968	70647168	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027445)	promoter-TSS (NM_027445)	-29.0	NM_024211	67863.0	Mm.296082	NM_024211	ENSMUSG00000014606	Slc25a11	2310022P18Rik|2oxoc	solute carrier family 25 (mitochondrial carrier oxoglutarate carrier), member 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117345327-4	chr8	117345177	117345377	+	757.775024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	-3893.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-64367595-1	chr13	64367495	64367695	+	612.333313	f1_c57bl6.idr	intron (NM_009984, intron 4 of 7)	PB1D10|SINE|Alu	2925.0	NM_009984	13039.0	Mm.930	NM_009984	ENSMUSG00000021477	Ctsl	1190035F06Rik|CatL|Ctsl1|MEP|fs|nkt	cathepsin L	protein-coding	2.27323008345172	2.32699618659318	1.03132819012808	1.97793146310854	1.52805196017784	1.06118831635453	1.03680518142982	2.18330274995222	-1.20381060255072	0.327293394710197	0.829797588613255
Merged-chr4-123612646-2	chr4	123612546	123612746	+	882.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199137, intron 1 of 92)	intron (NM_001199137, intron 1 of 92)	-3774.0	NR_105824	102465214.0		NR_105824	ENSMUSG00000099005	Mir6398	Gm27657|mmu-mir-6398	microRNA 6398	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101999578-3	chr7	101999447	101999647	+	851.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_133947, exon 14 of 25)	exon (NM_133947, exon 14 of 25)	18608.0	NM_010531	16068.0	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35165807-3	chr17	35165707	35165907	+	958.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020027)	promoter-TSS (NM_020027)	-930.0	NM_020027	53761.0	Mm.272462	NM_020027	ENSMUSG00000024393	Prrc2a	3110039B05Rik|Bat-2|Bat2|D17H6S51E|G2|Wbp12|mKIAA4178	proline-rich coiled-coil 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81687693-2	chr15	81687593	81687793	+	964.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_110362, exon 17 of 17)	non-coding (NR_110362, exon 17 of 17)	9594.0	NM_001164320	214685.0	Mm.393287	NM_001164320	ENSMUSG00000063765	Chadl	AY100452|D930017K21Rik	chondroadherin-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55052155-2	chr19	55052055	55052255	+	638.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47322.0	NM_008149	14732.0	Mm.210196	NM_008149	ENSMUSG00000024978	Gpam	GPAT|GPAT-1|GPAT1|P90	glycerol-3-phosphate acyltransferase, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4625456-2	chr16	4625356	4625556	+	770.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025571)	promoter-TSS (NM_025571)	-510.0	NM_025571	66449.0	Mm.354760	NM_025571	ENSMUSG00000014301	Pam16	2010110I09Rik|AV006767|CGI-136|Magmas|Tim16|Timm16	presequence translocase-asssociated motor 16 homolog (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-121244607-5	chr6	121244494	121244694	+	615.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1312.0	NM_011909	24110.0	Mm.326911	NM_011909	ENSMUSG00000030107	Usp18	1110058H21Rik|AW047653|UBP43|Ubp15	ubiquitin specific peptidase 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-54794065-1	chr4	54793965	54794165	+	628.0	f0_balb.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-153880.0	NM_172867	242466.0	Mm.102904	NM_172867	ENSMUSG00000060206	Zfp462	6030417H05|9430078C22Rik|Gt4-2|Zfpip	zinc finger protein 462	protein-coding	0.923976531221364	0.756990890616452	0.546021079495904	0.5391225006119	1.29078347882828	0.556919498066442	1.15164336670143	1.10519750538212	1.93840097199171	0.235762581004748	1
Merged-chr2-122743114-4	chr2	122742998	122743198	+	933.008301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019788, intron 2 of 4)	intron (NM_019788, intron 2 of 4)	4593.0	NM_019788	18457.0	Mm.268921	NM_019788	ENSMUSG00000005804	Bloc1s6	BLOC-1|Pldn|Stx13bp1|pa	biogenesis of lysosomal organelles complex-1, subunit 6, pallidin	protein-coding	1.92558952837549	1.8317710848079	1.62334804159956	1.41919181940514	0.985332279621412	2.38783476240054	1.90695598707095	1.01405361610907	0.0595260868091551	0.960364933344674	0.998431161219273
Merged-chr9-85587298-4	chr9	85587239	85587439	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	161995.0	NM_001081282	108837.0	Mm.22315	NM_175371	ENSMUSG00000035941	Ibtk	5430411K16Rik|AA409502|BTKI|mKIAA1417	inhibitor of Bruton agammaglobulinemia tyrosine kinase	protein-coding	4.24951734177318	4.8241796119282	4.5360932154866	5.1785130100321	3.84001789151095	4.71327823579616	4.41036121335032	4.62210870607754	-0.390219724938963	0.32574068463472	0.827782420413875
Merged-chr3-20018226-4	chr3	20018134	20018334	+	990.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080634, intron 8 of 16)	MTD|LTR|ERVL-MaLR	17076.0	NM_001146324	12807.0	Mm.291533	NM_080634	ENSMUSG00000027615	Hps3	coa	HPS3, biogenesis of lysosomal organelles complex 2 subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-82401690-4	chr12	82401598	82401798	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167983, intron 12 of 23)	intron (NM_001167983, intron 12 of 23)	90349.0	NM_172579	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-12459839-6	chr13	12459713	12459913	+	890.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291055)	promoter-TSS (NM_001291055)	-497.0	NM_001291055	56048.0	Mm.474138	NM_018886	ENSMUSG00000057554	Lgals8	1200015E08Rik|AI326142|D13Ertd524e|Lgals-8	lectin, galactose binding, soluble 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124001709-2	chr5	124001609	124001809	+	732.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145070, intron 30 of 31)	intron (NM_145070, intron 30 of 31)	4857.0	NR_105999	102465625.0		NR_105999	ENSMUSG00000098454	Mir7032	Gm27309|mmu-mir-7032	microRNA 7032	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-35121083-11	chr7	35120935	35121135	+	899.420227	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001287523, exon 1 of 1)	3' UTR (NM_001287523, exon 1 of 1)	1742.0	NM_007678	12606.0	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	1.12613602880729	1.55270159343137	1.49369849429553	0.824658253533059	1.13488437496026	1.56576252204077	1.72591777647907	0.826629417875624	0.307133069933475	0.818304423398392	0.998431161219273
Merged-chr16-4909335-4	chr16	4909225	4909425	+	879.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357062, intron 2 of 17)	intron (NM_001357062, intron 2 of 17)	23225.0	NM_001357061	17237.0	Mm.291326	NM_029657	ENSMUSG00000022517	Mgrn1	2610042J20Rik|mKIAA0544|md|nc	mahogunin, ring finger 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-59292306-3	chr9	59292220	59292420	+	661.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359282, intron 1 of 6)	intron (NM_001359282, intron 1 of 6)	748.0	NM_028121	72141.0	Mm.22456	NM_028121	ENSMUSG00000025236	Adpgk	2610017G09Rik|Adp-gk|C77577	ADP-dependent glucokinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-95411732-4	chr11	95411658	95411858	+	805.94165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2325.0	NM_025287	20747.0	Mm.285454	NM_025287	ENSMUSG00000057522	Spop	AI315626|Pcif1|TEF2	speckle-type POZ protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166967143-3	chr2	166967032	166967232	+	959.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109905, intron 1 of 11)	intron (NM_001109905, intron 1 of 11)	-2415.0	NR_111895	20853.0	Mm.73276	NM_011490	ENSMUSG00000039536	Stau1	5830401L18Rik|AW549911|C85792|Stau	staufen double-stranded RNA binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-88956928-4	chr9	88956843	88957043	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009742)	promoter-TSS (NM_009742)	23.0	NM_009742	12044.0	Mm.425593	NM_009742	ENSMUSG00000102037	Bcl2a1a	A1|BB218357|Bcl2a1|Bfl-1|Hbpa1	B cell leukemia/lymphoma 2 related protein A1a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-38490857-2	chr18	38490757	38490957	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	71950.0	NM_001355749	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-157135227-4	chr2	157135128	157135328	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018851)	promoter-TSS (NM_018851)	-6.0	NM_018851	56045.0	Mm.248478	NM_018851	ENSMUSG00000027639	Samhd1	E330031J07Rik|Mg11	SAM domain and HD domain, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-29693819-4	chr11	29693715	29693915	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_194051)	promoter-TSS (NM_194051)	41.0	NM_194051	68585.0	Mm.192580	NM_024226	ENSMUSG00000020458	Rtn4	1110020G17Rik|AA407876|AA409940|AA960376|ASY|C130026I10Rik|NOGO|NSP-CL|NgA|Nogo-A|Nogo-B|Nogo-C|mKIAA0886|mKIAA4153	reticulon 4	protein-coding	3.9308632139379	4.0696355881806	3.43948961406216	3.89600592530478	4.24380646764945	4.09830904528315	3.65655995575492	4.59687163951539	0.471010716226907	0.302773667519286	0.805114907556826
Merged-chr11-78178626-4	chr11	78178544	78178744	+	978.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_106113)	promoter-TSS (NR_106113)	-14.0	NM_001291236	68385.0	Mm.390375	NM_026708	ENSMUSG00000019437	Tlcd1	-	TLC domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-11140805-4	chr16	11140708	11140908	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_145931, exon 21 of 23)	exon (NM_145931, exon 21 of 23)	-6276.0	NM_029582	106200.0	Mm.291015	NM_029582	ENSMUSG00000022498	Txndc11	2810408E11Rik|AI427833|EFP1|Txdc11	thioredoxin domain containing 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-54913629-2	chr1	54913529	54913729	+	762.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081433, intron 1 of 27)	intron (NM_001081433, intron 1 of 27)	12758.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-49070809-4	chr7	49070698	49070898	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111016, intron 2 of 38)	intron (NM_001111016, intron 2 of 38)	91360.0	NR_154465	108167511.0	Mm.400599	NR_154465		9130015G15Rik	-	RIKEN cDNA 9130015G15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-56745266-1	chr18	56745166	56745366	+	543.0	f0_balb.idr	intron (NM_010721, intron 8 of 10)	intron (NM_010721, intron 8 of 10)	37453.0	NM_010721	16906.0	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-57017398-2	chr4	57017302	57017502	+	624.25	f0_balb.idr|f1_balb.idr	intron (NM_001355492, intron 21 of 24)	intron (NM_001355492, intron 21 of 24)	-27011.0	NM_001142965	230235.0	Mm.207654	NM_001142965	ENSMUSG00000045589	Frrs1l	6430704M03Rik	ferric-chelate reductase 1 like	protein-coding	3.11982380997167	1.92576415648958	2.59509515672918	2.86703664921062	3.54579059751325	3.71807798195245	2.46818352866174	2.77663806259231	0.915074051187167	0.202084379908481	0.687970553475004
Merged-chr4-132311029-2	chr4	132310929	132311129	+	750.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_027925)	TTS (NM_027925)	326.0	NR_028537	100217437.0		NR_028537		Snord99	MBII-420	small nucleolar RNA, C/D box 99	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-65650829-4	chr7	65650729	65650929	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172310, intron 3 of 18)	URR1B|DNA|hAT-Charlie	5931.0	NM_172310	272396.0	Mm.35127	NM_172310	ENSMUSG00000030515	Tarsl2	A530046H20Rik	threonyl-tRNA synthetase-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-104849438-3	chr14	104849330	104849530	+	763.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015593, intron 2 of 5)	MLTR25C|LTR|ERVK	210283.0	NR_015593	320249.0	Mm.320725	NR_015593	ENSMUSG00000115432	D130009I18Rik	-	RIKEN cDNA D130009I18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-40937777-3	chr14	40937687	40937887	+	927.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145928, intron 1 of 8)	intron (NM_145928, intron 1 of 8)	10422.0	NM_001316748	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-41474855-2	chr9	41474729	41474929	+	755.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_131931)	promoter-TSS (NR_131931)	-64.0	NR_131931	73144.0	Mm.38166	NM_001033153	ENSMUSG00000074415	3110039I08Rik	2610203C20Rik|AI848448|D230004N17Rik|D3Mgi9|Mir100hg	RIKEN cDNA 3110039I08 gene	ncRNA	0.957938492897413	0.399751556579526	0.391935745086062	0.938012086338833	1.13041382567054	0.401508303967713	0.738025695192663	0.386939059594541	0.0214911603651771	0.990659062859364	1
Merged-chr6-131433653-1	chr6	131433553	131433753	+	765.5	f0_balb.idr	Intergenic	Intergenic	-45203.0	NM_011733	56449.0	Mm.458000	NM_011733	ENSMUSG00000030189	Ybx3	Csda|Dpba|MSY3|MSY4|Yb2|dbpA|oxyR	Y box protein 3	protein-coding	1.47907562947885	1.01069863542234	0.782165013797773	1.25200994306569	1.65009654509651	1.01712326037451	1.54092792602087	0.774199414916127	0.564664514343971	0.686730886194338	0.996533206832645
Merged-chr7-42490928-2	chr7	42490828	42491028	+	911.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001309388, intron 2 of 6)	RLTR14|LTR|ERV1	14825.0	NM_001309389	434178.0	Mm.333810	NM_001309388	ENSMUSG00000092416	Zfp141	-	zinc finger protein 141	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-43668829-3	chr7	43668716	43668916	+	955.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-3215.0	NM_145582	233189.0	Mm.26514	NM_145582	ENSMUSG00000038888	Ctu1	Atpbd3|BC005752	cytosolic thiouridylase subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-118925452-1	chr14	118925352	118925552	+	672.666687	f0_balb.idr	promoter-TSS (NM_025943)	promoter-TSS (NM_025943)	18.0	NM_025943	66573.0	Mm.87456	NM_025943	ENSMUSG00000042156	Dzip1	2510025K24Rik|2810422M04Rik	DAZ interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-35392369-4	chr12	35392273	35392473	+	911.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	142616.0	NM_013464	11622.0	Mm.341377	NM_013464	ENSMUSG00000019256	Ahr	Ah|Ahh|Ahre|In|bHLHe76	aryl-hydrocarbon receptor	protein-coding	1.13784333102546	0.429583614017429	0.421843533851107	0.962301821242313	0.902781694307371	0.431325166355296	0.897769968600479	0.416902552363578	-0.526685039228329	0.77183655875241	1
Merged-chr6-40618156-2	chr6	40618056	40618256	+	700.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4846.0	NM_001001451	387513.0	Mm.377920	NM_001001451	ENSMUSG00000058250	Tas2r138	T2R138|Tas2r38|mt2r31	taste receptor, type 2, member 138	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-142596983-3	chr3	142596870	142597070	+	858.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010259, intron 1 of 10)	Lx9|LINE|L1	2123.0	NM_010259	14468.0	Mm.457978	NM_010259	ENSMUSG00000040264	Gbp2b	Gbp-1|Gbp1|Mag-1|Mpa-1|Mpa1	guanylate binding protein 2b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-45652441-2	chr15	45652341	45652541	+	799.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	-537507.0	NM_026200	67498.0	Mm.300079	NM_026200	ENSMUSG00000022342	Kcnv1	2700023A03Rik|vibe	potassium channel, subfamily V, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-13435408-3	chr15	13435308	13435508	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-261733.0	NM_007666	12563.0	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-29239433-2	chr6	29239333	29239533	+	776.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23069.0	NM_001302934	23917.0	Mm.260707	NM_011829	ENSMUSG00000003500	Impdh1	B930086D20Rik|IMPDH-I	inosine monophosphate dehydrogenase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-88513480-2	chr5	88513380	88513580	+	739.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	14417.0	NM_152839	16069.0	Mm.1192	NM_152839	ENSMUSG00000067149	Jchain	9530090F24Rik|AI323815|Igj|Jch	immunoglobulin joining chain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-93125445-4	chr1	93125352	93125552	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9788.0	NM_001276710	11611.0	Mm.7457	NM_016702	ENSMUSG00000026272	Agxt	AGT|Agt1|Agxt1|SPT	alanine-glyoxylate aminotransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-18331237-4	chr14	18331142	18331342	+	987.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009455, intron 1 of 5)	CpG	602.0	NM_009455	22194.0	Mm.4429	NM_009455	ENSMUSG00000021774	Ube2e1	UbcM3|Ubce5|ubcM2	ubiquitin-conjugating enzyme E2E 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-127242940-4	chr4	127242835	127243035	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030252)	promoter-TSS (NM_030252)	-849.0	NM_030252	80284.0	Mm.139607	NM_030252	ENSMUSG00000042380	Smim12	BC003266	small integral membrane protein 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-53404805-4	chr19	53404726	53404926	+	998.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14192.0	NM_172429	76479.0	Mm.313687	NM_172429	ENSMUSG00000025024	Smndc1	-	survival motor neuron domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-13722040-1	chr11	13721940	13722140	+	596.0	f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	457001.0	NR_131011	75280.0	Mm.108492	NR_131011	ENSMUSG00000085452	4930554G24Rik	-	RIKEN cDNA 4930554G24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36469370-2	chr18	36469270	36469470	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-14875.0	NM_026027	67199.0	Mm.30184	NM_026027	ENSMUSG00000024346	Pfdn1	2700086I23Rik|AA408327|AU044714	prefoldin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-13847800-3	chr9	13847683	13847883	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20067.0	NM_176836	72826.0	Mm.246174	NM_176836	ENSMUSG00000037808	Fam76b	2810485I05Rik|C78303	family with sequence similarity 76, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99146252-4	chr7	99146144	99146344	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5100.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-39804498-2	chr18	39804398	39804598	+	740.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	31001.0	NM_011033	18459.0	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-54683390-2	chr12	54683290	54683490	+	665.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025456, intron 4 of 5)	intron (NM_025456, intron 4 of 5)	12504.0	NM_001331162	66266.0	Mm.156440	NM_025456	ENSMUSG00000054302	Eapp	1810011O16Rik	E2F-associated phosphoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4199563-1	chr19	4199463	4199663	+	731.0	f1_c57bl6.idr	intron (NM_011237, intron 5 of 10)	intron (NM_011237, intron 5 of 10)	2040.0	NM_011237	19367.0	Mm.277629	NM_011237	ENSMUSG00000024824	Rad9a	Rad9	RAD9 checkpoint clamp component A	protein-coding	1.82294086700545	1.66938517142183	2.42853107344276	0.986604588444795	1.16894932544278	1.96936146207622	1.89690549691619	0.989784584046547	-0.717634966243188	0.554387824838325	0.959914380895535
Merged-chr19-3997808-2	chr19	3997708	3997908	+	675.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_011533, exon 5 of 8)	exon (NM_011533, exon 5 of 8)	-2772.0	NM_025529	66387.0	Mm.259222	NM_025529	ENSMUSG00000110949	Nudt8	2310039H17Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-169304246-2	chr2	169304146	169304346	+	692.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	325977.0	NR_040326	75508.0	Mm.271256	NR_040326	ENSMUSG00000086348	1700017J07Rik	-	RIKEN cDNA 1700017J07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-8459080-4	chr8	8458998	8459198	+	917.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	201675.0	NM_010111	13642.0	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-62762178-2	chr14	62762081	62762281	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045503, intron 1 of 6)	intron (NR_045503, intron 1 of 6)	-1069.0	NM_008715	18130.0	Mm.319684	NM_008715	ENSMUSG00000035161	Ints6	2900075H24Rik|AI480962|DICE1|Ddx26|HDB|Notch2l	integrator complex subunit 6	protein-coding	0.921301041360872	0.634619952669655	1.4068173458405	1.62857992401281	0.777951153156785	1.48572052002602	0.62464410846385	0.613500017152663	-1.11209513711749	0.470980747768734	0.92584289530549
Merged-chr10-128372305-2	chr10	128372205	128372405	+	577.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	-2268.0	NM_001081040	210582.0	Mm.296876	NM_001081040	ENSMUSG00000039914	Coq10a	Gm1	coenzyme Q10A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191083962-1	chr1	191083862	191084062	+	540.0	f1_balb.idr	3' UTR (NM_198654, exon 6 of 6)	3' UTR (NM_198654, exon 6 of 6)	-14452.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105293228-2	chr8	105293083	105293283	+	820.541626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357379, intron 4 of 12)	intron (NM_001357379, intron 4 of 12)	2930.0	NM_001357379	277978.0	Mm.40228	NM_177788	ENSMUSG00000043251	Exoc3l	C730015A04Rik|Exoc3l1	exocyst complex component 3-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-102736769-3	chr2	102736669	102736869	+	855.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077514, intron 2 of 10)	intron (NM_001077514, intron 2 of 10)	9991.0	NR_153852	102637542.0	Mm.371582	NR_153852		Gm13872	-	predicted gene 13872	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-8108359-3	chr14	8108287	8108487	+	915.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360314, intron 1 of 19)	intron (NM_001360314, intron 1 of 19)	10176.0	NM_001360315	218699.0	Mm.29515	NM_145458	ENSMUSG00000033885	Pxk	C230080L11Rik|D14Ertd813e|Monaka|Slob	PX domain containing serine/threonine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-102917616-4	chr2	102917506	102917706	+	991.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15941.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	2.48972568586224	2.51685000698942	2.57317115228262	2.73309804985334	2.96102683582667	3.13247123422006	2.59313926438192	3.43740305339119	0.932828922369029	0.170304236045165	0.637742678676777
Merged-chr11-98936643-5	chr11	98936488	98936688	+	829.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1108.0	NM_009024	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-75317736-4	chr1	75317632	75317832	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016878)	promoter-TSS (NM_016878)	-95.0	NM_001110831	13437.0	Mm.24680	NM_016878	ENSMUSG00000026209	Dnpep	AA407814	aspartyl aminopeptidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-10646687-4	chr18	10646550	10646750	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134130, intron 8 of 8)	intron (NM_134130, intron 8 of 8)	28854.0	NM_009226	20641.0	Mm.603	NM_009226	ENSMUSG00000002477	Snrpd1	AA407109|AL023031|SMD1	small nuclear ribonucleoprotein D1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-68254213-2	chr18	68254113	68254313	+	543.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_172631, exon 6 of 6)	exon (NM_172631, exon 6 of 6)	6760.0	NR_106078	102465702.0		NR_106078	ENSMUSG00000098253	Mir7219	Gm27613|mmu-mir-7219	microRNA 7219	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-67524241-3	chr7	67524138	67524338	+	775.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028144, intron 8 of 8)	intron (NR_028144, intron 8 of 8)	120998.0	NM_175124	67867.0	Mm.31247	NM_027413	ENSMUSG00000030556	Lrrc28	1300004K21Rik|2210012C09Rik|2310058O11Rik	leucine rich repeat containing 28	protein-coding	0.164115405222767	0.491174903995838	0.173099289545387	0.169698263350793	0.66594214853933	0.351071975456557	0.174076780574745	0.727210807520874	2.29004899748236	0.271690293758598	1
Merged-chr17-78736700-4	chr17	78736589	78736789	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011500)	promoter-TSS (NM_011500)	-129.0	NM_011500	268980.0	Mm.311915	NM_011500	ENSMUSG00000024077	Strn	AU022939|D130055P19	striatin, calmodulin binding protein	protein-coding	7.69308855925718	7.77826563241274	7.51167091705606	7.81791017429151	7.75439622796927	7.99996495390555	7.94058138641854	7.76920716979085	0.167331271847993	0.221984972412059	0.713583934962101
Merged-chr11-79116483-2	chr11	79116383	79116583	+	550.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013571, intron 1 of 17)	intron (NM_013571, intron 1 of 17)	29990.0	NM_013571	16706.0	Mm.4745	NM_013571	ENSMUSG00000018334	Ksr1	AW492498|B-KSR1|D11Bhm183e|D11Bhm184e|Ksr|RSU2|hb|mKSR1	kinase suppressor of ras 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-24790015-2	chr10	24789915	24790115	+	720.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134005, intron 17 of 24)	intron (NM_134005, intron 17 of 24)	46180.0	NM_134005	209558.0	Mm.338425	NM_134005	ENSMUSG00000019989	Enpp3	AI876438|CD203c	ectonucleotide pyrophosphatase/phosphodiesterase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4894769-3	chr16	4894667	4894867	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357062, intron 1 of 17)	intron (NM_001357062, intron 1 of 17)	8667.0	NM_001357061	17237.0	Mm.291326	NM_029657	ENSMUSG00000022517	Mgrn1	2610042J20Rik|mKIAA0544|md|nc	mahogunin, ring finger 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80146544-2	chr10	80146444	80146644	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_025313)	TTS (NM_025313)	-1728.0	NM_001305798	59090.0	Mm.143813	NM_021565	ENSMUSG00000035621	Midn	3000003C15Rik	midnolin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-59228909-4	chr3	59228813	59229013	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177855, intron 16 of 43)	intron (NM_177855, intron 16 of 43)	-18031.0	NM_028808	74191.0	Mm.90067	NM_028808	ENSMUSG00000036362	P2ry13	2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174	purinergic receptor P2Y, G-protein coupled 13	protein-coding	3.69404580273901	3.55637045080786	4.4313762526519	3.8882532443809	4.19221132690662	3.68251728454072	3.95926824268153	4.29251973419695	0.168041303501851	0.716542615800703	0.998431161219273
Merged-chr8-75104501-4	chr8	75104336	75104536	+	985.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4_|SINE|ID	-5073.0	NM_001302540	17218.0	Mm.5048	NM_008566	ENSMUSG00000005410	Mcm5	AA617332|AI324988|AL033333|Cdc46|Mcmd5|P1-CDC46	minichromosome maintenance complex component 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-149833143-4	chr1	149833049	149833249	+	757.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008869, intron 17 of 17)	intron (NM_008869, intron 17 of 17)	89290.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-86783248-2	chr10	86783148	86783348	+	645.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175331, intron 1 of 13)	intron (NM_175331, intron 1 of 13)	4243.0	NM_175331	103466.0	Mm.200446	NM_175331	ENSMUSG00000054027	Nt5dc3	AU040402|AW540062|C630002B14Rik|TU12B1-TY	5'-nucleotidase domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27704414-2	chr17	27704314	27704514	+	780.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286743, intron 3 of 9)	intron (NM_001286743, intron 3 of 9)	19175.0	NM_178365	23969.0	Mm.4926	NM_011861	ENSMUSG00000040276	Pacsin1	A830061D09Rik|H74|mKIAA1379|syndapin	protein kinase C and casein kinase substrate in neurons 1	protein-coding	-1.52696403314699	-1.49523967873556	-1.5048333853602	-1.51271394162622	-1.52473704212565	-1.49316068248889	-1.50266158046844	-1.06847079017215	2.01069003169785	0.564432837776867	1
Merged-chr5-140506556-2	chr5	140506456	140506656	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021528, intron 1 of 1)	intron (NM_021528, intron 1 of 1)	947.0	NM_021528	59031.0	Mm.28934	NM_021528	ENSMUSG00000036599	Chst12	AI595374|C4S-2|C4ST2	carbohydrate sulfotransferase 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-11603975-2	chr2	11603875	11604075	+	717.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_152824)	promoter-TSS (NM_152824)	-776.0	NM_152824	76938.0	Mm.182769	NM_152824	ENSMUSG00000037197	Rbm17	2700027J02Rik	RNA binding motif protein 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-129016629-1	chr5	129016529	129016729	+	598.0	f0_balb.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-3527.0	NM_009391	19384.0	Mm.297440	NM_009391	ENSMUSG00000029430	Ran	-	RAN, member RAS oncogene family	protein-coding	1.37594263218722	1.42690047449987	1.05590681181364	0.836715683520421	1.74414951752519	1.69641906139122	1.38674722460123	0.838686244088918	1.03153093205477	0.439299525365327	0.909130714404946
Merged-chr4-33030499-4	chr4	33030389	33030589	+	948.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019586)	promoter-TSS (NM_019586)	834.0	NR_036602	100504166.0	Mm.426309	NR_036602	ENSMUSG00000085037	4933421O10Rik	-	RIKEN cDNA 4933421O10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95662511-4	chr3	95662407	95662607	+	976.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008562, exon 3 of 3)	3' UTR (NM_008562, exon 3 of 3)	3786.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32161822-2	chr2	32161722	32161922	+	627.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172661, intron 1 of 29)	intron (NM_172661, intron 1 of 29)	10674.0	NM_001159634	227723.0	Mm.25504	NM_172661	ENSMUSG00000039262	Prrc2b	5830434P21Rik|AI173903|Bat2l|Bat2l1|D430039P21|mKIAA0515	proline-rich coiled-coil 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-51964397-6	chr13	51964296	51964496	+	781.486084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	117721.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-65536387-2	chr17	65536287	65536487	+	745.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001008973, intron 1 of 14)	intron (NM_001008973, intron 1 of 14)	4395.0	NM_001008973	381107.0	Mm.141275	NM_001008973	ENSMUSG00000045036	Tmem232	E130009J12Rik|Gm940|Tes13-L|Tes13-S	transmembrane protein 232	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-95766890-3	chr10	95766851	95767051	+	843.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TCTCTG)n|Simple_repeat|Simple_repeat	-173712.0	NM_001001932	216238.0	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-116944391-2	chr10	116944291	116944491	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359645, intron 1 of 10)	B2_Mm2|SINE|B2	6062.0	NM_001359645	216363.0	Mm.336394	NM_001003950	ENSMUSG00000064181	Rab3ip	B230311A06|Gtpat12|Rabin3	RAB3A interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-130800269-4	chr4	130800177	130800377	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011520, intron 1 of 4)	intron (NM_011520, intron 1 of 4)	7740.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-30040036-4	chr5	30039922	30040122	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26908.0	NM_031168	16193.0	Mm.1019	NM_031168	ENSMUSG00000025746	Il6	Il-6	interleukin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10862327-2	chr19	10862227	10862427	+	965.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_133804, intron 7 of 10)	intron (NM_133804, intron 7 of 10)	7452.0	NM_133804	98170.0	Mm.490254	NM_133804	ENSMUSG00000024736	Tmem132a	6720481D13Rik|Hspa5bp1|Orai1|R74613	transmembrane protein 132A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-102625820-2	chr15	102625712	102625912	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_001310070)	promoter-TSS (NM_001310070)	-348.0	NM_001310066	223922.0	Mm.208714	NM_146065	ENSMUSG00000099083	Atf7	1110012F10Rik|9430065F09Rik|AI549878|C130020M04Rik	activating transcription factor 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-71209205-3	chr14	71209100	71209300	+	857.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42073.0	NR_046075	100043132.0	Mm.399336	NR_046075	ENSMUSG00000115139	Gm4251	-	predicted gene 4251	ncRNA	1.51997061713874	1.45981131577342	2.83307577956988	1.3334839566013	3.17346669437934	3.87338509853136	4.1250017323605	4.55468024349799	3.57661751404079	5.58881250230888e-06	0.000279394051677925
Merged-chr8-6082958-1	chr8	6082858	6083058	+	761.0	f1_c57bl6.idr	Intergenic	Lx|LINE|L1	-977671.0	NM_011388	20494.0	Mm.3500	NM_011388	ENSMUSG00000023073	Slc10a2	9130221J18Rik|AI605518|ASBT|IBAT|ISBT	solute carrier family 10, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-75342289-4	chr18	75342187	75342387	+	989.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24801.0	NR_155535	102636262.0	Mm.421168	NR_155535		Gm20544	-	predicted gene 20544	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128299951-4	chr10	128299847	128300047	+	925.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1863.0	NM_031252	83430.0	Mm.125482	NM_031252	ENSMUSG00000025383	Il23a	IL-23|p19	interleukin 23, alpha subunit p19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-88436868-3	chr9	88436753	88436953	+	832.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359958, intron 1 of 28)	intron (NM_001359958, intron 1 of 28)	2098.0	NM_001359958	244962.0	Mm.439873	NM_172926	ENSMUSG00000032422	Snx14	B830022K16|C330035N22Rik|YR-14	sorting nexin 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-178309047-3	chr1	178308928	178309128	+	867.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16_Mm|LTR|ERVK	-10125.0	NM_025511	66359.0	Mm.489720	NM_025511	ENSMUSG00000026500	Cox20	2310005N03Rik|Fam36a	COX20 Cox2 chaperone	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-73594622-4	chr12	73594538	73594738	+	792.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001313977, intron 2 of 14)	intron (NM_001313977, intron 2 of 14)	9842.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-68723278-4	chr10	68723196	68723396	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177794)	promoter-TSS (NM_177794)	-450.0	NM_177794	327766.0	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-89197222-2	chr15	89197122	89197322	+	635.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027081)	promoter-TSS (NM_027081)	-748.0	NM_027081	69440.0	Mm.482128	NM_027081	ENSMUSG00000015377	Dennd6b	1700027J05Rik|AI414881|Fam116b	DENN/MADD domain containing 6B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-77407728-3	chr5	77407647	77407847	+	700.883362	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008048, exon 1 of 5)	exon (NM_008048, exon 1 of 5)	298.0	NM_001159518	29817.0	Mm.233470	NM_008048	ENSMUSG00000036256	Igfbp7	AGM|Fstl2|Mac25	insulin-like growth factor binding protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80671056-2	chr10	80670956	80671156	+	806.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021462, intron 5 of 13)	intron (NM_021462, intron 5 of 13)	5237.0	NM_021462	17347.0	Mm.42126	NM_021462	ENSMUSG00000020190	Mknk2	2010016G11Rik|Gprk7|Mnk2	MAP kinase-interacting serine/threonine kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35249533-2	chr17	35249433	35249633	+	560.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019693, intron 6 of 10)	intron (NM_019693, intron 6 of 10)	-1756.0	NR_106169	102465886.0		NR_106169	ENSMUSG00000098269	Mir8094	Gm27513|mmu-mir-8094	microRNA 8094	ncRNA	-0.762047253376261	0.149526098629829	-0.753426759061121	-0.570357579768969	-0.761241997065314	-0.748334890041178	-0.752507283265432	-0.756088760117829	-3.43164366502495	0.217894494718696	1
Merged-chr5-118644438-2	chr5	118644336	118644536	+	782.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347445, intron 2 of 30)	intron (NM_001347445, intron 2 of 30)	83717.0	NM_172424	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-20470649-4	chr5	20470550	20470750	+	863.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170746, intron 10 of 22)	RMER13A|LTR|ERVK	411474.0	NM_172992	68770.0	Mm.86410	NM_172992	ENSMUSG00000039987	Phtf2	1110054G21Rik|9530062N20Rik|AI447096|C77923	putative homeodomain transcription factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-25137732-3	chr19	25137652	25137852	+	737.944458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028785, intron 23 of 47)	intron (NM_028785, intron 23 of 47)	-99223.0	NM_181404	107351.0	Mm.260722	NM_181404	ENSMUSG00000032702	Kank1	A930031B09Rik|AU015049|AW121052|Ankrd15|D330024H06Rik|mKIAA0172	KN motif and ankyrin repeat domains 1	protein-coding	1.12016926839135	0.720304080988726	1.56858249732874	1.51408196076848	1.0036124538181	0.723095976727334	1.48167030165241	0.6997360899139	-1.0353457800939	0.485973201180445	0.932390278285207
Merged-chr11-48813845-4	chr11	48813759	48813959	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145377, intron 1 of 5)	MIRb|SINE|MIR	3532.0	NM_145377	211007.0	Mm.794	NM_145377	ENSMUSG00000040365	Trim41	AW552703|BC020156|R75223|RINCK	tripartite motif-containing 41	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167068545-2	chr2	167068445	167068645	+	926.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur2|SINE|Alu	3252.0	NR_028540	100217443.0		NR_028540		Snord12	MBII-99	small nucleolar RNA, C/D box 12	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-110503585-4	chr12	110503480	110503680	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081457, intron 1 of 12)	ORR1B2|LTR|ERVL-MaLR	17841.0	NM_012023	26931.0	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115474481-2	chr5	115474381	115474581	+	577.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_151517, intron 2 of 2)	intron (NR_151517, intron 2 of 2)	8339.0	NM_001356587	18778.0	Mm.20190	NM_011107	ENSMUSG00000029522	Pla2g1b	Pla2a|sPLA2IB	phospholipase A2, group IB, pancreas	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-11786822-3	chr19	11786724	11786924	+	963.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011502, intron 5 of 10)	intron (NM_011502, intron 5 of 10)	16409.0	NM_025606	94063.0	Mm.203928	NM_025606	ENSMUSG00000024683	Mrpl16	2310039D06Rik	mitochondrial ribosomal protein L16	protein-coding	0.732013881668029	1.07832589746652	0.660872428263927	0.776326656360601	0.73866022051003	1.08864056776776	0.499620610630916	0.494237364163804	-0.528024082836301	0.741093339127956	1
Merged-chr10-46105890-2	chr10	46105790	46105990	+	600.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MERVK26-int|LTR|ERVK	-138858.0	NR_028274	100302593.0		NR_028274	ENSMUSG00000095118	Snord14d	Gm23710	small nucleolar RNA, C/D box 14D	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-75372149-3	chr7	75372038	75372238	+	810.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62876.0	NM_153579	64176.0	Mm.273082	NM_153579	ENSMUSG00000053025	Sv2b	A830038F04Rik|AI850768|mKIAA0735	synaptic vesicle glycoprotein 2 b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24645973-1	chr17	24645873	24646073	+	599.0	f1_c57bl6.idr	intron (NM_023055, intron 2 of 6)	intron (NM_023055, intron 2 of 6)	-1016.0	NM_023449	65962.0	Mm.21587	NM_023055	ENSMUSG00000002504	Slc9a3r2	0610011L07Rik|1200011K07Rik|2010007A20Rik|E3karp|NHERF-2|Nherf2|Octs2|Sip-1|Sip1|Sryip1|Tka-1	solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-36630889-2	chr16	36630790	36630990	+	731.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_019388, intron 1 of 7)	MTEa|LTR|ERVL-MaLR	35187.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	0.359017262850443	0.200345915326267	-0.108349934903026	-0.110999591779443	-0.114701035348782	0.206871790971033	-0.107587856576854	0.0301535229168568	-0.940142750435815	0.675129672437412	1
Merged-chr17-5636978-2	chr17	5636878	5637078	+	978.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	144378.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-64616789-4	chr1	64616641	64616841	+	997.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_025964, exon 1 of 3)	5' UTR (NM_025964, exon 1 of 3)	427.0	NM_025964	67099.0	Mm.46394	NM_025964	ENSMUSG00000025956	Mettl21a	2310038H17Rik|AI464204|Fam119a	methyltransferase like 21A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-82846251-1	chr8	82846151	82846351	+	879.3333130000001	f0_balb.idr	Intergenic	Intergenic	-17105.0	NM_177378	330812.0	Mm.491438	NM_177378	ENSMUSG00000047747	Rnf150	A630007N06Rik|C030044C12Rik|Greul5|mKIAA1214	ring finger protein 150	protein-coding	2.61609353034084	1.44656679955315	1.67722585668984	2.66817890066349	3.42078500856953	1.98584167338543	2.86706265565123	3.02013644836173	1.37234468510769	0.113808503194527	0.528434373578923
Merged-chr14-26645664-3	chr14	26645567	26645767	+	677.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007479, intron 1 of 5)	B1_Mus1|SINE|Alu	7533.0	NM_007479	11843.0	Mm.297768	NM_007479	ENSMUSG00000021877	Arf4	AA407803	ADP-ribosylation factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-87023610-2	chr11	87023510	87023710	+	735.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-29848.0	NM_001005341	77864.0	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-99187694-2	chr4	99187612	99187812	+	868.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	-6222.0	NM_175029	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	0.638073689505682	1.17605053743296	0.339249416862834	0.331348750416393	0.646182068547399	1.3964725211523	0.341490290800063	0.332736053552979	0.438534880593345	0.807531899220925	1
Merged-chr17-26677296-4	chr17	26677183	26677383	+	994.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025272, intron 1 of 3)	intron (NM_025272, intron 1 of 3)	887.0	NM_025272	11974.0	Mm.22602	NM_025272	ENSMUSG00000015575	Atp6v0e	Atp6k|Atp6v0e1|M9.2	ATPase, H+ transporting, lysosomal V0 subunit E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-15712328-2	chr9	15712228	15712428	+	573.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172289, intron 1 of 10)	intron (NM_172289, intron 1 of 10)	2590.0	NM_172289	234967.0	Mm.138815	NM_172289	ENSMUSG00000043885	Slc36a4	6330573I15Rik|PAT4	solute carrier family 36 (proton/amino acid symporter), member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120631690-3	chr11	120631597	120631797	+	894.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010756, intron 1 of 2)	intron (NM_010756, intron 1 of 2)	1850.0	NM_010756	17134.0	Mm.268010	NM_010756	ENSMUSG00000051510	Mafg	AA545192|C630022N07Rik	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein G (avian)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3628740-1	chr19	3628640	3628840	+	752.5	f1_c57bl6.idr	intron (NM_008513, intron 6 of 22)	intron (NM_008513, intron 6 of 22)	-52991.0	NM_028999	52036.0	Mm.284686	NM_028999	ENSMUSG00000024908	Ppp6r3	4930528G08Rik|9130026N02Rik|D19Bwg1430e|D19Ertd703e|Pp6r3|Ppcs3|Pptcs3|Sapl|Saps3|mKIAA1558	protein phosphatase 6, regulatory subunit 3	protein-coding	-1.43172712806865	-1.3992492906874	-1.40907085678131	-1.41713858359971	-0.932192548427885	-1.39712091634321	-1.40684746950024	-1.41569446435649	2.19283191591698	0.528233640655333	1
Merged-chr11-106664657-4	chr11	106664562	106664762	+	912.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305158, intron 13 of 14)	intron (NM_001305158, intron 13 of 14)	50619.0	NM_001305158	18613.0	Mm.343951	NM_008816	ENSMUSG00000020717	Pecam1	C85791|Cd31|PECAM-1|Pecam	platelet/endothelial cell adhesion molecule 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-85188154-2	chr13	85188035	85188235	+	601.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	-1250.0	NM_001347587	66671.0	Mm.18474	NM_023243	ENSMUSG00000021548	Ccnh	6330408H09Rik|AI661354|AV102684|AW538719	cyclin H	protein-coding	1.58904489007053	2.63191689287371	2.7166516222169	1.21328737331311	2.25633354280888	2.65235149050157	2.5595864387804	1.2183151608351	0.170577715165694	0.870750604641061	0.998431161219273
Merged-chr4-147335554-2	chr4	147335454	147335654	+	904.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039209, intron 1 of 2)	intron (NM_001039209, intron 1 of 2)	159688.0	NM_001039209	195531.0	Mm.270762	NM_001039209	ENSMUSG00000078496	Zfp982	Gm13152	zinc finger protein 982	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167358679-4	chr2	167358594	167358794	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER5|LTR|ERV1	-9516.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-20973255-2	chr5	20973155	20973355	+	727.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21433.0	NM_001080977	242860.0	Mm.254286	NM_001080977	ENSMUSG00000039968	Rsbn1l	8430412F05Rik|AI447441|C330002G24Rik	round spermatid basic protein 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-67462732-3	chr7	67462624	67462824	+	773.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-89866.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21160942-2	chr9	21160842	21161042	+	765.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-4772.0	NM_183408	18577.0	Mm.191749	NM_019798	ENSMUSG00000032177	Pde4a	D9Ertd60e|Dpde2	phosphodiesterase 4A, cAMP specific	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44552391-4	chr9	44552287	44552487	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F|LTR|ERVL-MaLR	-25966.0	NM_007551	12145.0	Mm.6246	NM_007551	ENSMUSG00000047880	Cxcr5	Blr1|CXC-R5|CXCR-5|Gpcr6|MDR15	chemokine (C-X-C motif) receptor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97149906-4	chr6	97149802	97150002	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	AT_rich|Low_complexity|Low_complexity	-1019.0	NM_175313	101351.0	Mm.116802	NM_175313	ENSMUSG00000035245	Eogt	A130022J15Rik|AI447490|AW214473|AW259391|Aer61	EGF domain-specific O-linked N-acetylglucosamine (GlcNAc) transferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-107506401-3	chr1	107506288	107506488	+	764.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5035.0	NM_001174170	18788.0	Mm.271870	NM_011111	ENSMUSG00000062345	Serpinb2	PAI-2|Planh2|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98414255-3	chr11	98414154	98414354	+	845.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003817, intron 1 of 26)	intron (NM_001003817, intron 1 of 26)	1770.0	NM_001003817	13866.0	Mm.290822	NM_001003817	ENSMUSG00000062312	Erbb2	Erbb-2|HER-2|HER2|Neu|c-erbB2|c-neu|l11Jus8|mKIAA3023	erb-b2 receptor tyrosine kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-79504915-2	chr7	79504815	79505015	+	730.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029818)	promoter-TSS (NR_029818)	-349.0	NR_029818	723968.0		NR_029818	ENSMUSG00000093238	Mir9-3	Mirn9-3|mir-9-3|mmu-mir-9-3	microRNA 9-3	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-105623793-2	chr5	105623693	105623893	+	603.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-76176.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-127222300-4	chr1	127222255	127222455	+	879.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145128, intron 1 of 17)	intron (NM_145128, intron 1 of 17)	17369.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127428172-3	chr10	127428069	127428269	+	641.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359246, intron 1 of 23)	intron (NM_001359246, intron 1 of 23)	7302.0	NM_001359243	71750.0	Mm.29342	NM_027900	ENSMUSG00000025404	R3hdm2	1300003K24Rik|AU041262|mKIAA1002	R3H domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-83660438-2	chr7	83660338	83660538	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360088, intron 12 of 18)	intron (NM_001360088, intron 12 of 18)	-4943.0	NM_001360089	16170.0	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-140614114-4	chr6	140614008	140614208	+	991.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8555.0	NM_178803	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-114361905-2	chr6	114361805	114362005	+	770.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CAGGA)n|Simple_repeat|Simple_repeat	-36031.0	NM_001317125	15465.0	Mm.333327	NM_008285	ENSMUSG00000053004	Hrh1	Bphs|H1R|HH1R|Hir	histamine receptor H1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-24935316-4	chr2	24935196	24935396	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162485)	promoter-TSS (NM_001162485)	-15.0	NM_178408	215705.0	Mm.45275	NM_178408	ENSMUSG00000026972	Arrdc1	AI957342|BC004091	arrestin domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-19065206-8	chr10	19065077	19065277	+	877.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49767.0	NM_009397	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-81859093-4	chr7	81859011	81859211	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_111910, exon 1 of 8)	non-coding (NR_111910, exon 1 of 8)	110.0	NM_145375	107769.0	Mm.221412	NM_145375	ENSMUSG00000038623	Tm6sf1	AI428514|BC023123|C630016D09Rik	transmembrane 6 superfamily member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-69893139-4	chr12	69893039	69893239	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_201519)	promoter-TSS (NM_201519)	24.0	NM_201519	399510.0	Mm.291936	NM_201519	ENSMUSG00000034761	Map4k5	4432415E19Rik|GCKR|KHS|MAPKKKK5	mitogen-activated protein kinase kinase kinase kinase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53513852-2	chr4	53513752	53513952	+	653.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133891, intron 3 of 15)	intron (NM_133891, intron 3 of 15)	73439.0	NM_133891	100434.0	Mm.482207	NM_133891	ENSMUSG00000028412	Slc44a1	2210409B22Rik|4833416H08Rik|AW547365|CHTL1|CTL1|Cdw92	solute carrier family 44, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-122021132-4	chr7	122021004	122021204	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028758)	promoter-TSS (NM_028758)	94.0	NM_028758	74105.0	Mm.29619	NM_028758	ENSMUSG00000030872	Gga2	1200007E24Rik|mKIAA1080	golgi associated, gamma adaptin ear containing, ARF binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-136742898-4	chr3	136742796	136742996	+	990.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008913, intron 1 of 13)	intron (NM_008913, intron 1 of 13)	72830.0	NM_001293622	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-62894303-1	chr9	62894203	62894403	+	636.0	f0_balb.idr	intron (NM_019663, intron 9 of 13)	intron (NM_019663, intron 9 of 13)	-32279.0	NR_003965	677044.0	Mm.422004	NR_003965	ENSMUSG00000074250	Gm10653	-	ribsomal protein S2 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-142392392-2	chr7	142392292	142392492	+	831.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4522.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-38711663-2	chr6	38711563	38711763	+	677.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_010433, intron 12 of 14)	intron (NM_010433, intron 12 of 14)	48594.0	NM_001101507	665180.0	Mm.349066	NM_001101507	ENSMUSG00000079598	Clec2l	AI414054|AW122724|Gm1064	C-type lectin domain family 2, member L	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44405792-4	chr7	44405678	44405878	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21652.0	NM_016663	20981.0	Mm.4824	NM_016663	ENSMUSG00000030731	Syt3	AI385753|sytIII	synaptotagmin III	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171392410-3	chr1	171392189	171392389	+	588.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001005508, intron 1 of 11)	intron (NM_001005508, intron 1 of 11)	3329.0	NM_001005508	226652.0	Mm.251048	NM_001005508	ENSMUSG00000048865	Arhgap30	6030405P05Rik|Gm102|mFLJ00267	Rho GTPase activating protein 30	protein-coding	1.83321779064097	2.18395338262779	1.24671194054681	1.79204116308277	2.24496716768871	2.31852516657525	1.68873682107734	2.44379683662261	1.06332599927288	0.279178916623889	0.782600907240097
Merged-chr3-107331239-2	chr3	107331139	107331339	+	685.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_001045807, exon 1 of 2)	exon (NM_001045807, exon 1 of 2)	2050.0	NM_001045807	229700.0	Mm.27966	NM_001045807	ENSMUSG00000048109	Rbm15	C230088J01Rik|mKIAA1438	RNA binding motif protein 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-31136369-2	chr3	31136269	31136469	+	709.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13551.0	NM_008770	18417.0	Mm.4425	NM_008770	ENSMUSG00000037625	Cldn11	Claudin-11|Claudin11|Osp|Otm	claudin 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-154160223-2	chr4	154160123	154160323	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_026388, exon 2 of 4)	exon (NM_026388, exon 2 of 4)	461.0	NR_151647	67808.0	Mm.288737	NM_026388	ENSMUSG00000029030	Tprgl	1200015A19Rik|Svap30|Tprg1l|mover	transformation related protein 63 regulated like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67711134-4	chr10	67711018	67711218	+	676.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-139159.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36162309-2	chr1	36162209	36162409	+	636.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_198899, exon 30 of 41)	exon (NM_198899, exon 30 of 41)	-17996.0	NR_105862	102465540.0		NR_105862	ENSMUSG00000098752	Mir6897	Gm27652|mmu-mir-6897	microRNA 6897	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118163863-4	chr11	118163772	118163972	+	929.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001112699)	TTS (NM_001112699)	-34653.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-53104192-4	chr15	53104089	53104289	+	989.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010162, intron 3 of 10)	intron (NM_010162, intron 3 of 10)	241994.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-122987163-2	chr10	122987063	122987263	+	599.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1439.0	NR_029527	387251.0		NR_029527	ENSMUSG00000065406	Mirlet7i	Mirnlet7i|let-7i|mmu-let-7i	microRNA let7i	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-65112662-1	chr1	65112562	65112762	+	1000.0	f0_c57.idr	intron (NM_175293, intron 5 of 7)	intron (NM_175293, intron 5 of 7)	-9299.0	NM_007774	12964.0	Mm.26904	NM_007774	ENSMUSG00000044429	Cryga	Cryg-4|DGcry-4	crystallin, gamma A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-40470531-4	chr12	40470455	40470655	+	945.7333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	24502.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-51839448-4	chr13	51839354	51839554	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7221.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-58415291-4	chr3	58415187	58415387	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001081229, exon 1 of 4)	5' UTR (NM_001081229, exon 1 of 4)	567.0	NM_001347233	72033.0	Mm.218409	NM_001081229	ENSMUSG00000027806	Tsc22d2	1810043J12Rik|5530402M19Rik	TSC22 domain family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97397171-4	chr6	97397075	97397275	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 5 of 23)	intron (NM_145148, intron 5 of 23)	62111.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-94415448-1	chr11	94415348	94415548	+	720.0	f1_balb.idr	intron (NM_009783, intron 33 of 35)	intron (NM_009783, intron 33 of 35)	-22472.0	NM_029600	76408.0	Mm.23942	NM_029600	ENSMUSG00000020865	Abcc3	1700019L09Rik|ABC31|MLP2|MOAT-D|MRP3	ATP-binding cassette, sub-family C (CFTR/MRP), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118602702-2	chr9	118602602	118602802	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-4007.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-58567621-3	chr15	58567519	58567719	+	839.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	152151.0	NM_145959	210998.0	Mm.3224	NM_145959	ENSMUSG00000037119	Fam91a1	AV220772|BC033609|D15Ertd621e|SKIN|mKIAA0493	family with sequence similarity 91, member A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117064515-2	chr10	117064415	117064615	+	984.599976	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007636)	promoter-TSS (NM_007636)	-663.0	NM_007636	12461.0	Mm.247788	NM_007636	ENSMUSG00000034024	Cct2	Cctb	chaperonin containing Tcp1, subunit 2 (beta)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-137594801-4	chr4	137594695	137594895	+	947.0125119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355588, intron 1 of 26)	intron (NM_001355588, intron 1 of 26)	623.0	NM_130879	170707.0	Mm.218478	NM_130879	ENSMUSG00000043411	Usp48	2810449C13Rik|AI115503|BC021769|D330022K21Rik|Usp31	ubiquitin specific peptidase 48	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-75684202-6	chr12	75684087	75684287	+	901.7777710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	-14650.0	NM_028203	72338.0	Mm.341719	NM_028203	ENSMUSG00000045690	Wdr89	2600001A11Rik	WD repeat domain 89	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-115957631-2	chr13	115957538	115957738	+	604.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Rod|LINE|L1	352050.0	NM_021459	16392.0	Mm.42242	NM_021459	ENSMUSG00000042258	Isl1	-	ISL1 transcription factor, LIM/homeodomain	protein-coding	1.62270419029027	1.64278200453912	2.56409583655076	2.25891058719561	1.76321169037193	1.19250643180431	1.91171603378944	1.71516454570312	-1.16299693661558	0.261337877855635	0.762408459680314
Merged-chr19-11096008-3	chr19	11095906	11096106	+	717.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_027058)	TTS (NM_027058)	-14903.0	NM_022430	64381.0	Mm.34460	NM_022430	ENSMUSG00000024730	Ms4a8a	2010004L09Rik|AI481240|CD20L5|Ms4a8	membrane-spanning 4-domains, subfamily A, member 8A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-11319746-3	chr10	11319635	11319835	+	875.7333369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23710.0	NM_010146	13853.0	Mm.89946	NM_010146	ENSMUSG00000055493	Epm2a	TG-B|Tg(TcraK,TcrbK)TG-BFlv	epilepsy, progressive myoclonic epilepsy, type 2 gene alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-51955824-4	chr15	51955731	51955931	+	692.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35929.0	NM_009009	19357.0	Mm.182628	NM_009009	ENSMUSG00000022314	Rad21	SCC1|mKIAA0078	RAD21 cohesin complex component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-5016246-4	chr7	5016158	5016358	+	997.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025324, intron 1 of 1)	MIRb|SINE|MIR	750.0	NM_025324	66056.0	Mm.19974	NM_025324	ENSMUSG00000051184	Zfp524	0610012F07Rik|2300009P13Rik|Znf524	zinc finger protein 524	protein-coding	1.44104683783561	1.34199333838956	1.44131210936311	1.40182584395441	1.45288092235878	0.9583549882177	1.78672131886782	1.2744038242202	0.0236063205282272	0.984363040575161	0.998431161219273
Merged-chr11-119041875-3	chr11	119041704	119041904	+	923.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013926)	promoter-TSS (NM_013926)	-891.0	NM_013926	30951.0	Mm.99953	NM_013926	ENSMUSG00000025578	Cbx8	Pc3	chromobox 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-39490900-4	chr18	39490795	39490995	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3650.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-100203575-4	chr13	100203456	100203656	+	993.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-1434.0	NM_010872	17948.0	Mm.89961	NM_010872	ENSMUSG00000078945	Naip2	Birc1b|Naip-rs6	NLR family, apoptosis inhibitory protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3861316-1	chr19	3861216	3861416	+	566.0	f1_balb.idr	intron (NM_001271496, intron 1 of 11)	(TTTTG)n|Simple_repeat|Simple_repeat	9543.0	NR_073190	12660.0	Mm.225505	NM_013490	ENSMUSG00000024843	Chka	CK|CK/EK-alpha|Chetk-alpha|Chk|ChoK|EK|EtnK-alpha	choline kinase alpha	protein-coding	0.872437376915127	1.13558267176808	0.503297385231766	0.665590327611739	0.881547206609197	1.14714924659595	0.505098858240869	0.668896818586054	0.0388150749963688	0.980383958344748	1
Merged-chr7-4995654-2	chr7	4995554	4995754	+	608.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_026741, intron 1 of 1)	intron (NM_026741, intron 1 of 1)	447.0	NM_026741	68490.0	Mm.76400	NM_026741	ENSMUSG00000051550	Zfp579	1110003A17Rik|Znf579	zinc finger protein 579	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-23088642-4	chr2	23088516	23088716	+	832.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355638, intron 7 of 13)	intron (NM_001355638, intron 7 of 13)	19544.0	NM_001355638	74159.0	Mm.181973	NM_028793	ENSMUSG00000026781	Acbd5	1300014E15Rik	acyl-Coenzyme A binding domain containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-65580932-8	chr18	65580867	65581067	+	988.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207255, intron 1 of 5)	CpG	737.0	NM_207255	328977.0	Mm.286232	NM_207255	ENSMUSG00000042439	Zfp532	C530030I18Rik|Znf532|mKIAA1629	zinc finger protein 532	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91931188-2	chr2	91931088	91931288	+	725.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001291483, exon 3 of 4)	exon (NM_001291483, exon 3 of 4)	514.0	NM_001291481	17242.0	Mm.906	NM_010784	ENSMUSG00000027239	Mdk	MK|Mek	midkine	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-64752416-3	chr17	64752357	64752557	+	961.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008549, exon 22 of 22)	exon (NM_008549, exon 22 of 22)	-14654.0	NR_105051	101202683.0	Mm.393309	NR_105051		Dreh	-	down-regulated in hepatocellular carcinoma	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-6415543-3	chr15	6415463	6415663	+	702.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037905, intron 1 of 13)	intron (NM_001037905, intron 1 of 13)	28815.0	NM_001310446	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-95335910-4	chr8	95335790	95335990	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133954, intron 2 of 6)	intron (NM_133954, intron 2 of 6)	3606.0	NM_133954	101985.0	Mm.29069	NM_133954	ENSMUSG00000031792	Usb1	AA960436	U6 snRNA biogenesis 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-24530259-4	chr18	24530134	24530334	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144861)	promoter-TSS (NM_144861)	-30.0	NM_001360807	225283.0	Mm.28427	NM_144861	ENSMUSG00000040446	Rprd1a	C77387|mKIAA4077	regulation of nuclear pre-mRNA domain containing 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-134938665-2	chr4	134938565	134938765	+	702.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TAAA)n|Simple_repeat|Simple_repeat	7685.0	NM_026780	68592.0	Mm.29989	NM_026780	ENSMUSG00000028821	Syf2	1110018L13Rik|Cbpin|D4Bwg1551e|Gcipip|Ntc31|mp29|p29	SYF2 homolog, RNA splicing factor (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-34613893-3	chr4	34613815	34614015	+	672.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159563, intron 1 of 19)	intron (NM_001159563, intron 1 of 19)	1027.0	NM_001159563	50793.0	Mm.399624	NM_015824	ENSMUSG00000040044	Orc3	Orc3l	origin recognition complex, subunit 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-60611979-3	chr3	60611777	60611977	+	673.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253711, intron 3 of 7)	intron (NM_001253711, intron 3 of 7)	110698.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	1.21255825126235	1.41262609870063	0.586609965316308	0.577548484946005	1.22576830445263	1.42659220813288	0.589180297129799	0.579139544405023	0.0404594704762832	0.980640492445976	0.998431161219273
Merged-chr9-87043444-4	chr9	87043363	87043563	+	636.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359962, intron 8 of 14)	intron (NM_001359962, intron 8 of 14)	21434.0	NM_001359962	266690.0	Mm.30166	NM_024195	ENSMUSG00000032872	Cyb5r4	2810034J18Rik|B5+B5R|C79736|Cb5cb5r|Ncb5or|b5/b5r|b5b5r	cytochrome b5 reductase 4	protein-coding	0.791855201888698	0.431210077623089	0.755768353551193	1.22933831413841	0.800861156402158	0.432936656058161	0.425229327099396	0.732869747565099	-1.30212490041972	0.444101836902564	1
Merged-chr2-93456606-4	chr2	93456435	93456635	+	848.2708130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040533, exon 3 of 3)	non-coding (NR_040533, exon 3 of 3)	3716.0	NR_040533	100038525.0	Mm.440596	NR_040532	ENSMUSG00000075025	Gm10804	-	predicted gene 10804	ncRNA	-2.18308165884198	-2.15547475440471	-2.16382331017202	-2.1706810624505	-2.18114370519566	-2.15366558754311	-2.03057248461154	-2.16945352807143	0.759018020146679	0.829933115115583	1
Merged-chr10-79885246-2	chr10	79885146	79885346	+	599.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 3 of 4)	B1_Mur2|SINE|Alu	-1066.0	NM_015779	50701.0	Mm.262194	NM_015779	ENSMUSG00000020125	Elane	Ela2|F430011M15Rik|NE	elastase, neutrophil expressed	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-78651839-3	chr14	78651759	78651959	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081336, intron 3 of 29)	intron (NM_001081336, intron 3 of 29)	-7408.0	NR_104044	380921.0	Mm.89591	NM_001081336	ENSMUSG00000034731	Dgkh	5930402B05Rik|D130015C16|DGK	diacylglycerol kinase, eta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-125795315-2	chr2	125795220	125795420	+	629.0	f0_c57.idr|f1_c57bl6.idr	Intergenic	B1F2|SINE|Alu	-12450.0	NM_177608	70354.0	Mm.138091	NM_133725	ENSMUSG00000035093	Secisbp2l	3110001I20Rik|AI504340|C630011I23	SECIS binding protein 2-like	protein-coding	1.43558698577972	0.745827080671467	1.10321591326621	1.52932215970374	0.710123683706376	1.44172272192667	0.736255000768827	1.33468780204726	-0.558311279209317	0.707289119882471	0.998431161219273
Merged-chr10-25331914-4	chr10	25331817	25332017	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27881.0	NM_001358754	13822.0	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-145830213-4	chr2	145830098	145830298	+	869.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028724, intron 4 of 12)	intron (NM_028724, intron 4 of 12)	44082.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-173450047-2	chr1	173449934	173450134	+	586.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013779, intron 2 of 8)	intron (NM_001013779, intron 2 of 8)	29430.0	NM_001013779	383619.0	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	1.3561398233874	1.10450820441412	0.267278769005122	0.259767459358045	0.704046068259235	0.279029911670951	0.269409679990704	0.261086200662085	-2.49007030764058	0.209633025407905	1
Merged-chr2-166712484-4	chr2	166712390	166712590	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	1342.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5585696-2	chr19	5585596	5585796	+	581.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MERV1_I-int|LTR|ERV1	-16177.0	NM_026616	68209.0	Mm.246200	NM_026616	ENSMUSG00000024925	Rnaseh2c	1500026D16Rik|AYP1	ribonuclease H2, subunit C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-128076433-4	chr8	128076307	128076507	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	201818.0	NR_105822	102465212.0		NR_105822	ENSMUSG00000099326	Mir21c	Gm28013|mmu-mir-21c	microRNA 21c	ncRNA	2.88720789272621	4.05216895831278	3.98563852192317	3.81772250687704	3.38029901339593	3.70226124766575	4.18609314409008	3.77139383370618	0.0538783586273764	0.91744264274486	0.998431161219273
Merged-chr9-109049980-2	chr9	109049880	109050080	+	634.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357932, intron 2 of 5)	intron (NM_001357932, intron 2 of 5)	-1116.0	NM_001357935	66940.0	Mm.196533	NM_025858	ENSMUSG00000025647	Shisa5	2310008D10Rik|6430628I05Rik|Scotin|mShisa5	shisa family member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70691578-1	chr8	70691478	70691678	+	836.0	f1_c57bl6.idr	Intergenic	Intergenic	-6161.0	NM_010592	16478.0	Mm.419851	NM_010592	ENSMUSG00000071076	Jund	Jund1	jun D proto-oncogene	protein-coding	-1.84303373260285	-1.81303463126392	-1.82210660711932	-1.82955859819738	-1.84092785115721	-1.81106869625141	-1.8200529106377	-1.54273750312762	1.50114612804783	0.670102668014672	1
Merged-chr15-83100190-4	chr15	83100082	83100282	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023475)	promoter-TSS (NM_023475)	-23.0	NM_023475	68607.0	Mm.30056	NM_023475	ENSMUSG00000058586	Serhl	0610008B10Rik|1110019M09Rik|AU019786	serine hydrolase-like	protein-coding	4.57219355083814	4.70763119462414	4.92318961687032	4.75767874419654	5.12237690454154	4.93717431048613	5.39676401640053	5.2279582954358	0.526806215716072	0.0960557983429801	0.481134484491682
Merged-chr11-120791943-2	chr11	120791843	120792043	+	839.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_026824, exon 10 of 14)	exon (NM_026824, exon 10 of 14)	4452.0	NM_026824	68730.0	Mm.180622	NM_026824	ENSMUSG00000025155	Dus1l	1110032N12Rik	dihydrouridine synthase 1-like (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59201411-3	chr15	59201303	59201503	+	845.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-105545.0	NR_045613	100416830.0	Mm.490788	NR_045613	ENSMUSG00000098528	Zfp572	4930472F24Rik	zinc finger protein 572	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-84127084-4	chr15	84126986	84127186	+	846.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3911.0	NM_029427	75772.0	Mm.159565	NM_029427	ENSMUSG00000018868	Pnpla5	4833426H19Rik|GS2L	patatin-like phospholipase domain containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-113844074-4	chr13	113843980	113844180	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172595, intron 1 of 4)	intron (NM_172595, intron 1 of 4)	49572.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-8884562-4	chr10	8884451	8884651	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 1 of 19)	MIRb|SINE|MIR	1519.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-86427565-4	chr4	86427468	86427668	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_029967, exon 28 of 28)	3' UTR (NM_029967, exon 28 of 28)	130735.0	NM_001081096	75811.0	Mm.56451	NM_001081096	ENSMUSG00000028492	Saxo1	4930500O09Rik|Fam154a	stabilizer of axonemal microtubules 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-126477786-4	chr2	126477690	126477890	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359975, intron 3 of 27)	intron (NM_001359975, intron 3 of 27)	13763.0	NM_001080944	241633.0	Mm.222235	NM_001080944	ENSMUSG00000060131	Atp8b4	Im	ATPase, class I, type 8B, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-121793384-1	chr8	121793284	121793484	+	544.0	f1_c57bl6.idr	Intergenic	Intergenic	36185.0	NM_145605	234825.0	Mm.209329	NM_145605	ENSMUSG00000040263	Klhdc4	AA408426|AV352552|BC012312|G430025P05Rik	kelch domain containing 4	protein-coding	0.928827599294377	1.66503274468161	1.01564813963159	0.983605941399021	0.790877568467347	0.655031223029645	0.643101169212978	1.45614316960269	-1.0284185472102	0.481206898351973	0.929210758613564
Merged-chr16-78218339-2	chr16	78218239	78218439	+	758.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37115.0	NR_045698	100503619.0	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-30112683-3	chr17	30112588	30112788	+	850.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356265, intron 2 of 5)	B4|SINE|B4	107649.0	NM_001356265	21769.0	Mm.220972	NM_148926	ENSMUSG00000044477	Zfand3	AW539211|TEG-27|Tex27	zinc finger, AN1-type domain 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91950424-4	chr2	91950325	91950525	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166597)	promoter-TSS (NM_001166597)	-77.0	NM_001166597	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-89167987-2	chr15	89167887	89168087	+	543.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_138749, exon 4 of 38)	exon (NM_138749, exon 4 of 38)	-5079.0	NR_106066	102465672.0		NR_106066	ENSMUSG00000106328	Mir7118	mmu-mir-7118	microRNA 7118	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-20656762-2	chr11	20656671	20656871	+	825.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24794.0	NM_001038625	58172.0	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	-0.390683016849217	0.345339773768604	-0.382080235560161	-0.385315527869782	-0.242969125135517	-0.178748312627126	-0.381155073830806	-0.217292307766053	-0.95585432185227	0.686027388289186	1
Merged-chr5-115515582-3	chr5	115515481	115515681	+	772.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011223, intron 1 of 10)	intron (NM_011223, intron 1 of 10)	8905.0	NM_133915	19303.0	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	2.75199908026754	2.98352762137348	3.26351448622078	2.68299631414204	2.77554170977696	3.98317756626087	2.33658470618357	2.9190933721453	0.380519363250205	0.582028019108327	0.966599221005409
Merged-chr18-49756343-3	chr18	49756237	49756437	+	938.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001170960)	promoter-TSS (NM_001170960)	-736.0	NM_026854	68857.0	Mm.96010	NM_026854	ENSMUSG00000024505	Dtwd2	1190002H09Rik|8030470C17Rik|AI414673|BB115449	DTW domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31188897-4	chr14	31188803	31189003	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347583, intron 7 of 13)	intron (NM_001347583, intron 7 of 13)	17923.0	NM_022656	64652.0	Mm.298728	NM_022656	ENSMUSG00000021910	Nisch	1200007D05Rik|3202002H23Rik|AW494485|I-1|edsn	nischarin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-11769400-2	chr19	11769300	11769500	+	584.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1015.0	NM_025606	94063.0	Mm.203928	NM_025606	ENSMUSG00000024683	Mrpl16	2310039D06Rik	mitochondrial ribosomal protein L16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-89000479-3	chr6	89000386	89000586	+	777.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-95624.0	NR_134978	232217.0	Mm.281744	NM_175017	ENSMUSG00000055403	4933427D06Rik	-	RIKEN cDNA 4933427D06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-117172608-4	chr2	117172479	117172679	+	916.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001277256, exon 5 of 5)	3' UTR (NM_001277256, exon 5 of 5)	-12548.0	NR_030440	732489.0		NR_030440	ENSMUSG00000076376	Mir674	Mirn674|mir-674|mmu-mir-674	microRNA 674	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-125066714-4	chr4	125066629	125066829	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175246)	promoter-TSS (NM_175246)	57.0	NM_001356560	76793.0	Mm.22548	NM_175246	ENSMUSG00000050213	Snip1	2410133M08Rik	Smad nuclear interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-32698762-4	chr16	32698649	32698849	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25595.0	NM_001289443	51789.0	Mm.251115	NM_016788	ENSMUSG00000022791	Tnk2	Ack|Ack-1|Ack1|Cdgip|Pyk1	tyrosine kinase, non-receptor, 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-123319891-4	chr8	123319724	123319924	+	918.43335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	-1248.0	NM_016925	14087.0	Mm.6536	NM_016925	ENSMUSG00000032815	Fanca	AW208693|FACA	Fanconi anemia, complementation group A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-3510585-1	chr5	3510485	3510685	+	569.0	f1_balb.idr	intron (NM_009873, intron 5 of 7)	intron (NM_009873, intron 5 of 7)	-33248.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	-0.0317205368030077	-0.165120404673743	-0.170381096183405	-0.174449156249089	0.410513053261917	0.590822700544493	-0.169219664899029	-0.173737875329746	3.0885296281633	0.184822548205101	1
Merged-chr14-25474157-4	chr14	25474067	25474267	+	979.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	14982.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-60738733-4	chr14	60738659	60738859	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310594, intron 1 of 9)	L1MB2|LINE|L1	5855.0	NM_001310594	219140.0	Mm.149776	NM_001033272	ENSMUSG00000021990	Spata13	C79050|ESTM11|X83327|mFLJ00298	spermatogenesis associated 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30063217-2	chr2	30063117	30063317	+	616.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023871, intron 1 of 7)	intron (NM_023871, intron 1 of 7)	1221.0	NM_023871	56086.0	Mm.326055	NM_023871	ENSMUSG00000054766	Set	2610030F17Rik|5730420M11Rik|AA407739|I-2PP2A|StF-IT-1|TAF-I	SET nuclear oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-151934496-2	chr4	151934396	151934596	+	733.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172704, intron 1 of 15)	CpG	776.0	NM_172704	230935.0	Mm.21353	NM_172704	ENSMUSG00000039768	Dnajc11	E030019A03Rik	DnaJ heat shock protein family (Hsp40) member C11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-73524617-4	chr7	73524541	73524741	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081345, intron 2 of 38)	intron (NM_001081345, intron 2 of 38)	17105.0	NM_001081345	244059.0	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-64447452-4	chr15	64447353	64447553	+	862.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-64534.0	NM_010026	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-32512707-2	chr3	32512607	32512807	+	619.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356625, intron 1 of 6)	intron (NM_001356625, intron 1 of 6)	2115.0	NM_144519	67778.0	Mm.285620	NM_144519	ENSMUSG00000027667	Zfp639	6230400O18Rik|ANC-2H01|ZASC1|Znf639	zinc finger protein 639	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100441118-4	chr11	100441019	100441219	+	987.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026561)	promoter-TSS (NM_026561)	-30.0	NM_001102650	68106.0	Mm.28738	NM_026561	ENSMUSG00000017176	Nt5c3b	2610037D24Rik|AI841843|C330027I04Rik|Nt5c3l	5'-nucleotidase, cytosolic IIIB	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-105216575-4	chr13	105216531	105216731	+	753.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360891, intron 5 of 7)	intron (NM_001360891, intron 5 of 7)	76383.0	NM_027934	71816.0	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-98106790-4	chr7	98106677	98106877	+	960.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008663, intron 3 of 48)	intron (NM_008663, intron 3 of 48)	2471.0	NM_001256082	17921.0	Mm.1403	NM_008663	ENSMUSG00000030761	Myo7a	Hdb|Myo7|USH1B|nmf371|polka|sh-1|sh1	myosin VIIA	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-37648634-3	chr3	37648523	37648723	+	715.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8676.0	NM_011896	24063.0	Mm.330986	NM_011896	ENSMUSG00000037211	Spry1	sprouty1|spry-1	sprouty RTK signaling antagonist 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135282900-4	chr4	135282789	135282989	+	929.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10129.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-136559528-2	chr1	136559428	136559628	+	862.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65373.0	NM_177643	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-46201093-2	chr18	46200993	46201193	+	834.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178872, intron 1 of 9)	intron (NM_178872, intron 1 of 9)	-2275.0	NM_001170855	28105.0	Mm.277382	NM_178872	ENSMUSG00000033949	Trim36	D18Wsu100e|haprin	tripartite motif-containing 36	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5725693-2	chr17	5725593	5725793	+	717.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 6 of 8)	intron (NM_146073, intron 6 of 8)	-72964.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-5629322-4	chr11	5629214	5629414	+	797.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_023816, exon 16 of 27)	exon (NM_023816, exon 16 of 27)	59630.0	NM_023816	76389.0	Mm.67300	NM_023816	ENSMUSG00000020481	Ankrd36	1700008J08Rik|1700012M14Rik|Ankrd48	ankyrin repeat domain 36	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-25524359-3	chr15	25524264	25524464	+	704.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-98186.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-114139976-3	chr2	114139890	114140090	+	935.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290788, intron 16 of 33)	intron (NM_001290788, intron 16 of 33)	10580.0	NR_105968	102465982.0		NR_105968	ENSMUSG00000098464	Mir7002	Gm27429|mmu-mir-7002	microRNA 7002	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-129021038-6	chr5	129020998	129021198	+	893.805542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009391, intron 4 of 6)	intron (NM_009391, intron 4 of 6)	942.0	NM_009391	19384.0	Mm.297440	NM_009391	ENSMUSG00000029430	Ran	-	RAN, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-44471188-4	chr11	44471106	44471306	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024475)	promoter-TSS (NM_024475)	-658.0	NM_024475	79560.0	Mm.338784	NM_024475	ENSMUSG00000041231	Ublcp1	4930527B16Rik|8430435I17Rik|BC002236	ubiquitin-like domain containing CTD phosphatase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-144769850-2	chr5	144769750	144769950	+	798.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081362, intron 1 of 70)	RSINE1|SINE|B4	1058.0	NM_001081362	100683.0	Mm.273570	NM_001081362	ENSMUSG00000045482	Trrap	AI481500	transformation/transcription domain-associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19276033-2	chr7	19275933	19276133	+	645.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_177691)	TTS (NM_177691)	4016.0	NM_177691	232941.0	Mm.134068	NM_177691	ENSMUSG00000030402	Ppm1n	A930002H20|C79127	protein phosphatase, Mg2+/Mn2+ dependent, 1N (putative)	protein-coding	1.07062648633855	2.60655500332566	1.61802575042373	2.34736342594739	1.07740534540604	2.62718403695456	1.63111058656321	2.36045583833783	0.0354252874981913	0.974864112188993	0.998431161219273
Merged-chr6-115288424-3	chr6	115288327	115288527	+	711.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-36222.0	NM_001356406	110595.0	Mm.255607	NM_080639	ENSMUSG00000030317	Timp4	Timp-4	tissue inhibitor of metalloproteinase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88494107-4	chr3	88494007	88494207	+	904.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019390)	promoter-TSS (NM_019390)	-795.0	NM_019390	16905.0	Mm.243014	NM_019390	ENSMUSG00000028063	Lmna	Dhe	lamin A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-147399029-2	chr4	147398929	147399129	+	973.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039209, intron 1 of 2)	RMER17D2|LTR|ERVK	-154248.0	NM_001014397	433804.0	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154	zinc finger protein 985	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-119799003-3	chr8	119798907	119799107	+	766.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20591.0	NM_028883	74347.0	Mm.358759	NM_028883	ENSMUSG00000034105	Tldc1	4632415K11Rik|Kiaa1609	TBC/LysM associated domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-36811708-4	chr5	36811671	36811871	+	744.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008550, intron 15 of 18)	PB1D7|SINE|Alu	-15017.0	NM_026242	67568.0	Mm.332336	NM_026242	ENSMUSG00000055302	Mrfap1	9130413I22Rik|AL022827|Pam14	Morf4 family associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26647353-4	chr17	26647244	26647444	+	892.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026170, intron 9 of 9)	intron (NM_026170, intron 9 of 9)	-29052.0	NM_025272	11974.0	Mm.22602	NM_025272	ENSMUSG00000015575	Atp6v0e	Atp6k|Atp6v0e1|M9.2	ATPase, H+ transporting, lysosomal V0 subunit E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-172475316-4	chr1	172475209	172475409	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029612)	promoter-TSS (NM_029612)	-51.0	NM_029612	98365.0	Mm.150050	NM_029612	ENSMUSG00000026548	Slamf9	2310026I04Rik|AI462096|CD2F-10|CD84-H1|Cd2f10|SF2001	SLAM family member 9	protein-coding	-1.17367364971587	-1.14665061133654	-1.15856004380685	-1.16834280623128	-1.17310571790619	-1.14406978763884	-0.42938571406771	-1.16659169643457	2.89727187181404	0.396361616615464	1
Merged-chr19-5130691-2	chr19	5130591	5130791	+	744.549988	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12283.0	NM_008451	16594.0	Mm.271648	NM_008451	ENSMUSG00000024862	Klc2	8030455F02Rik|AW212649|KLC 2|KLC-2	kinesin light chain 2	protein-coding	1.33197095040598	1.7627238801932	1.80067271000043	1.91808714775342	1.20997699868082	0.924519777376252	0.908717390169785	1.26744126057171	-2.54843013539396	0.0482629623562611	0.319334019678541
Merged-chr11-114231998-2	chr11	114231898	114232098	+	866.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33740.0	NR_045930	73536.0	Mm.54275	NR_045930	ENSMUSG00000078600	1700092K14Rik	-	RIKEN cDNA 1700092K14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-79686983-3	chr11	79686889	79687089	+	841.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175543, intron 10 of 14)	intron (NM_175543, intron 10 of 14)	-11903.0	NR_045898	72218.0	Mm.443271	NR_045898	ENSMUSG00000086569	Rab11fip4os2	1700020F10Rik|4930542H20Rik|Rab11fib4os2	RAB11 family interacting protein 4 (class II), opposite strand 2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-142414800-2	chr6	142414700	142414900	+	626.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001242345, exon 4 of 6)	exon (NM_001242345, exon 4 of 6)	1369.0	NM_001242345	319552.0	Mm.39649	NM_001242345	ENSMUSG00000071112	Spx	B230216G23Rik|Npq	spexin hormone	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-86993329-2	chr11	86993229	86993429	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001005341, intron 1 of 4)	CpG	433.0	NM_001005341	77864.0	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-34283831-1	chr19	34283731	34283931	+	587.0	f0_c57.idr	Intergenic	Intergenic	-6828.0	NM_007987	14102.0	Mm.1626	NM_007987	ENSMUSG00000024778	Fas	AI196731|APO1|APT1|CD95|TNFR6|Tnfrsf6|lpr	Fas (TNF receptor superfamily member 6)	protein-coding	1.9082258730301	1.06324241951501	2.29555917177283	2.60343472748216	0.981145880184275	1.0692845086146	1.5179804406425	2.40575983025578	-1.10355211959649	0.367316603884746	0.862214284611162
Merged-chr17-7863921-3	chr17	7863818	7864018	+	797.194458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58944.0	NM_001081416	68655.0	Mm.379161	NM_001081416	ENSMUSG00000071984	Fndc1	1110027O12Rik|1110051A18Rik|mKIAA1866	fibronectin type III domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-118511064-1	chr7	118510964	118511164	+	822.0	f1_balb.idr	intron (NM_001304758, intron 6 of 6)	intron (NM_001304758, intron 6 of 6)	-19089.0	NM_001033380	319622.0	Mm.323386	NM_001033380	ENSMUSG00000095115	Itpripl2	C130081G24|E030018N11Rik	inositol 1,4,5-triphosphate receptor interacting protein-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-21031969-5	chr19	21031901	21032101	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72709.0	NR_126458	75354.0	Mm.243873	NR_126458		4930554I06Rik	-	RIKEN cDNA 4930554I06 gene	ncRNA	5.55368845166357	5.73789366278342	5.49115407322932	6.39436307892509	5.31656598975844	5.90336638933437	5.34236688474223	5.54448532816499	-0.341834341612617	0.237804592915291	0.734370450805304
Merged-chr10-68721196-4	chr10	68721097	68721297	+	920.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2549.0	NM_177794	327766.0	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	2.80636897902165	2.96228305615001	1.47899064901421	2.96186015641234	3.50296518847745	2.46074995371342	1.77445494543941	3.46289793205736	0.567588599231928	0.501023435077764	0.938226730357636
Merged-chr13-54999118-2	chr13	54999018	54999218	+	650.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153131, intron 7 of 15)	intron (NM_153131, intron 7 of 15)	21701.0	NM_001206390	212032.0	Mm.267479	NM_001033245	ENSMUSG00000025877	Hk3	HK III|HK-III	hexokinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-40306307-3	chr1	40306228	40306428	+	780.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001123382, intron 8 of 10)	RLTR17|LTR|ERVK	-18261.0	NM_001356478	107527.0	Mm.155583	NM_133193	ENSMUSG00000070942	Il1rl2	AI481289|AW551444|IL-1Rrp2	interleukin 1 receptor-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-125620455-3	chr8	125620334	125620534	+	923.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35796.0	NR_015535	75930.0	Mm.195663	NR_015535	ENSMUSG00000110629	4930567H12Rik	4930579P07Rik	RIKEN cDNA 4930567H12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-34983605-2	chr9	34983505	34983705	+	763.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001190912, intron 3 of 15)	intron (NM_001190912, intron 3 of 15)	-133123.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	0.0192676798518872	0.380415668266954	-0.350406256503159	-0.35376720628398	-0.358516743397994	-0.345067953394738	-0.349445453905164	-0.184527444927518	-2.75448738773258	0.26363512477925	1
Merged-chr17-46751168-2	chr17	46751068	46751268	+	956.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_028065, intron 1 of 5)	intron (NM_028065, intron 1 of 5)	1046.0	NM_001305989	72029.0	Mm.240325	NM_028065	ENSMUSG00000023973	Cnpy3	1600025D17Rik|2410050O22Rik|AI413153|CAG4A|ERDA5|PRAT4A|Tnrc5	canopy FGF signaling regulator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-101740699-4	chr12	101740590	101740790	+	926.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	-22167.0	NM_001082976	74413.0	Mm.275939	NM_028924	ENSMUSG00000021187	Tc2n	4933406D09Rik|Mtac2d1|Tac2-N	tandem C2 domains, nuclear	protein-coding	1.98724731190812	1.14945856903759	1.37787302769259	2.80504328191344	1.47549865759732	1.8440560263791	1.60046419175949	2.63196621697878	-0.0870852357242576	0.936095751938292	0.998431161219273
Merged-chr3-52047170-4	chr3	52047069	52047269	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	57837.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-34906249-2	chr2	34906149	34906349	+	585.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028716, intron 5 of 14)	intron (NM_028716, intron 5 of 14)	7727.0	NM_028716	74016.0	Mm.65691	NM_028716	ENSMUSG00000026873	Phf19	3110009G19Rik|3321402G02Rik	PHD finger protein 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-23865132-1	chr10	23865032	23865232	+	901.0	f0_c57.idr	intron (NM_011979, intron 4 of 6)	intron (NM_011979, intron 4 of 6)	13670.0	NM_011979	26464.0	Mm.27334	NM_011979	ENSMUSG00000020010	Vnn3	-	vanin 3	protein-coding	2.73952113976733	2.67415224716478	1.39893373643002	2.01413188079732	1.79657358102161	1.1763159942311	1.14641368866988	2.24820406837665	-1.55773899032197	0.152292366378585	0.605910723135302
Merged-chr8-117258879-2	chr8	117258779	117258979	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	1860.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-3166779-4	chr11	3166681	3166881	+	988.5	f0_balb.idr|f1_balb.idr	intron (NM_030207, intron 7 of 32)	B3|SINE|B2	26682.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-56637334-4	chr19	56637247	56637447	+	903.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-85025.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-35649978-2	chr2	35649878	35650078	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290641, intron 2 of 15)	intron (NM_001290641, intron 2 of 15)	27997.0	NM_001114124	69601.0	Mm.29629	NM_001001602	ENSMUSG00000026883	Dab2ip	2310011D08Rik|AI480459|Aip1|mKIAA1743	disabled 2 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-87275541-4	chr17	87275425	87275625	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015506, intron 4 of 4)	intron (NR_015506, intron 4 of 4)	7289.0	NR_015506	74597.0	Mm.63783	NR_015506	ENSMUSG00000085287	4833418N02Rik	-	RIKEN cDNA 4833418N02 gene	ncRNA	5.79624706438991	5.25262525645742	5.78387115712521	5.20279716695074	5.0636994038299	6.025340387422	5.6007519663889	4.06682497391891	-0.212244982201345	0.566216748901982	0.962163739245057
Merged-chr5-140702952-2	chr5	140702852	140703052	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028833)	promoter-TSS (NM_028833)	-574.0	NM_001347517	74239.0	Mm.179704	NM_028833	ENSMUSG00000036555	Iqce	1700028P05Rik|mKIAA1023	IQ motif containing E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-90900935-4	chr5	90900840	90901040	+	988.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2959.0	NM_009140	20310.0	Mm.4979	NM_009140	ENSMUSG00000058427	Cxcl2	CINC-2a|GROb|Gro2|MIP-2|MIP-2a|Mgsa-b|Mip2|Scyb|Scyb2	chemokine (C-X-C motif) ligand 2	protein-coding	3.12118562068944	1.83315222471744	3.17249685993801	2.84395516672587	2.02634752596012	2.72572988802873	3.19680226571589	2.13106130604703	-0.449551412165489	0.571005389118884	0.962868434236805
Merged-chr3-129270211-1	chr3	129270111	129270311	+	617.666687	f0_balb.idr	3' UTR (NM_007934, exon 20 of 20)	3' UTR (NM_007934, exon 20 of 20)	56279.0	NM_001042502	18741.0	Mm.246804	NM_011098	ENSMUSG00000028023	Pitx2	9430085M16Rik|Brx1|Brx1b|Munc30|Otlx2|Ptx2|Rieg	paired-like homeodomain transcription factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-99243364-4	chr9	99243262	99243462	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023873)	promoter-TSS (NM_023873)	21.0	NM_023873	68121.0	Mm.288739	NM_023873	ENSMUSG00000056267	Cep70	6720484E09Rik|Bite|C030018L16Rik	centrosomal protein 70	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-59921186-3	chr10	59921142	59921342	+	632.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30528.0	NM_029083	74747.0	Mm.21697	NM_029083	ENSMUSG00000020108	Ddit4	5830413E08Rik|AA415483|REDD1|Rtp801|dig2	DNA-damage-inducible transcript 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-55172320-2	chr13	55172229	55172429	+	778.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19511.0	NM_008011	14186.0	Mm.276715	NM_008011	ENSMUSG00000005320	Fgfr4	Fgfr-4	fibroblast growth factor receptor 4	protein-coding	-0.429165910719733	-0.873612895455471	-0.880042310359133	-0.882147047040279	-0.515285789036623	-0.870994549976101	-0.879439369138014	-0.881779851595733	-0.36230783815378	0.907723332250447	1
Merged-chr9-71165286-4	chr9	71165190	71165390	+	973.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2001.0	NM_022026	64008.0	Mm.449427	NM_022026	ENSMUSG00000032204	Aqp9	1700020I22Rik|AI266899|AQP-9	aquaporin 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-148393326-4	chr2	148393246	148393446	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2031.0	NM_009219	20608.0	Mm.35324	NM_009219	ENSMUSG00000037014	Sstr4	Smstr4|sst4	somatostatin receptor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-43539212-1	chr10	43539112	43539312	+	541.0	f1_balb.idr	intron (NM_026411, intron 1 of 3)	Lx8|LINE|L1	1806.0	NM_026411	67851.0	Mm.209953	NM_026411	ENSMUSG00000019797	1700021F05Rik	-	RIKEN cDNA 1700021F05 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-94611605-4	chr11	94611518	94611718	+	835.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9832.0	NM_153807	264895.0	Mm.386885	NM_153807	ENSMUSG00000076435	Acsf2	-	acyl-CoA synthetase family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-94126989-2	chr11	94126889	94127089	+	572.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001199203)	TTS (NM_001199203)	82784.0	NM_001025429	70834.0	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-111139782-2	chr5	111139599	111139799	+	737.5	f0_balb.idr|f1_c57bl6.idr	intron (NM_001267622, intron 5 of 22)	intron (NM_001267622, intron 5 of 22)	135555.0	NR_030482	735278.0		NR_030482	ENSMUSG00000076163	Mir701	Mirn701|mir-701|mmu-mir-701	microRNA 701	ncRNA	0.635789904188176	0.166358754044347	0.162093933254475	0.298530199570307	0.570150838821742	0.167326861528212	0.163030363336891	0.625605222502578	0.51903944067234	0.799885578987748	1
Merged-chr3-158062328-4	chr3	158062235	158062435	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359763, intron 11 of 13)	intron (NM_001359763, intron 11 of 13)	25653.0	NM_001289524	67144.0	Mm.358704	NM_024194	ENSMUSG00000063052	Lrrc40	2610040E16Rik|AI837674	leucine rich repeat containing 40	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-116947102-2	chr8	116947002	116947202	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177700, intron 1 of 3)	intron (NM_177700, intron 1 of 3)	3709.0	NM_177700	234776.0	Mm.259736	NM_177700	ENSMUSG00000047388	Atmin	Asciz|gpg6|mKIAA0431	ATM interactor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36078490-2	chr1	36078390	36078590	+	566.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_015818, intron 1 of 1)	intron (NM_015818, intron 1 of 1)	10090.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-116405956-2	chr12	116405885	116406085	+	829.0	f0_balb.idr|f1_balb.idr	promoter-TSS (NR_028421)	promoter-TSS (NR_028421)	583.0	NM_133762	76044.0	Mm.491196	NM_133762	ENSMUSG00000042029	Ncapg2	5830426I05Rik|Luzp5|Mtb|mCAP-G2	non-SMC condensin II complex, subunit G2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-23768056-4	chr11	23767962	23768162	+	994.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009044, intron 1 of 9)	intron (NM_009044, intron 1 of 9)	2908.0	NM_009044	19696.0	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-148494791-4	chr5	148494696	148494896	+	794.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56877.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140510357-2	chr5	140510257	140510457	+	636.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021528, intron 1 of 1)	HAL1|LINE|L1	4748.0	NM_021528	59031.0	Mm.28934	NM_021528	ENSMUSG00000036599	Chst12	AI595374|C4S-2|C4ST2	carbohydrate sulfotransferase 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-59807841-2	chr4	59807741	59807941	+	693.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_172468, intron 1 of 8)	MLT1F|LTR|ERVL-MaLR	2191.0	NM_172468	209131.0	Mm.259705	NM_172468	ENSMUSG00000028385	Snx30	4732481H14Rik|C030041J06Rik	sorting nexin family member 30	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-15848577-4	chr3	15848456	15848656	+	969.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001173459)	promoter-TSS (NM_001173459)	-69.0	NM_001173459	100038947.0	Mm.330924	NM_001173459	ENSMUSG00000074677	LOC100038947	-	signal-regulatory protein beta 1-like	protein-coding	3.81936590401216	4.0702912982055	4.90730905579589	4.46261145774589	3.35985324167654	3.86788904934025	3.81980004313231	3.62269461992482	-0.963143778751912	0.0392700933834479	0.282027223411168
Merged-chr9-107771112-4	chr9	107770997	107771197	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_148930)	promoter-TSS (NM_148930)	-95.0	NM_001359525	83486.0	Mm.259197	NM_148930	ENSMUSG00000032580	Rbm5	D030069N10Rik	RNA binding motif protein 5	protein-coding	4.77772301302656	5.0230810819219	4.25275367335102	5.48182661594191	4.67226268803192	4.4314350841183	5.59777997243619	4.84787795835424	0.00733693658582498	0.984895922756553	0.998431161219273
Merged-chr11-99231413-2	chr11	99231313	99231513	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020618)	promoter-TSS (NM_020618)	-396.0	NM_020618	57376.0	Mm.379086	NM_020618	ENSMUSG00000037935	Smarce1	2810417B20Rik|5830412H02Rik|9030408N19Rik|Baf27	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1	protein-coding	0.244022729444682	-0.281167286172316	-0.115365543592744	-0.288354485231908	0.255081892048286	-0.280249693478214	-0.284334807871275	-0.287809161409544	-0.2812890176164	0.909716557651599	1
Merged-chr1-55822777-4	chr1	55822639	55822839	+	747.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-108502.0	NR_045837	329159.0	Mm.98697	NR_045837	ENSMUSG00000099950	9130227L01Rik	-	RIKEN cDNA 9130227L01 gene	ncRNA	2.10626043198428	1.55463351487874	2.17208426968838	2.9762271978083	2.4738900294589	1.29381976772207	1.90390835110373	1.99154168480975	-0.761531501684276	0.440653676521415	0.909663250327588
Merged-chr2-167980529-3	chr2	167980414	167980614	+	904.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001080708)	TTS (NM_001080708)	30079.0	NM_001080708	69553.0	Mm.68454	NM_001080708	ENSMUSG00000074577	Ripor3	2310033K02Rik|Fam65c|Gm124	RIPOR family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-60580098-4	chr3	60579988	60580188	+	977.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310514, intron 2 of 8)	RMER10A|LTR|ERVL	78909.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	3.36505785719745	4.12539006565404	3.56507198947948	3.94858268681707	3.66943721400831	3.62344323848089	3.7541240206795	4.02358388184317	-0.000816649407782639	0.998660799050095	0.999479715059607
Merged-chr16-30309613-2	chr16	30309513	30309713	+	602.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_008148, exon 2 of 2)	exon (NM_008148, exon 2 of 2)	1168.0	NM_008148	14729.0	Mm.3519	NM_008148	ENSMUSG00000047953	Gp5	GPV	glycoprotein 5 (platelet)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-101159552-3	chr9	101159445	101159645	+	670.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161362, intron 6 of 13)	intron (NM_001161362, intron 6 of 13)	39528.0	NM_172144	235542.0	Mm.335386	NM_172144	ENSMUSG00000043154	Ppp2r3a	3222402P14Rik|A730042E07	protein phosphatase 2, regulatory subunit B'', alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-181548419-4	chr2	181548300	181548500	+	867.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271584, intron 4 of 5)	intron (NM_001271584, intron 4 of 5)	27915.0	NM_001271584	13002.0	Mm.140761	NM_016775	ENSMUSG00000000826	Dnajc5	2610314I24Rik|AU018536|Csp	DnaJ heat shock protein family (Hsp40) member C5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-116951141-1	chr10	116951041	116951241	+	637.0	f0_balb.idr	promoter-TSS (NM_001003950)	promoter-TSS (NM_001003950)	579.0	NR_038026	71086.0	Mm.214134	NR_038025	ENSMUSG00000112627	4933412E12Rik	-	RIKEN cDNA 4933412E12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-40938584-1	chr13	40938484	40938684	+	846.0	f0_balb.idr	intron (NM_133219, intron 1 of 2)	intron (NM_133219, intron 1 of 2)	20950.0	NM_133219	14538.0	Mm.314757	NM_008105	ENSMUSG00000021360	Gcnt2	5330430K10Rik|IGnT|IGnTA|IGnTB|IGnTC	glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81360870-2	chr10	81360770	81360970	+	895.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028657, intron 2 of 9)	intron (NM_028657, intron 2 of 9)	3379.0	NM_028657	73822.0	Mm.182281	NM_028657	ENSMUSG00000034854	Mfsd12	C19orf28|F630110N24Rik|Wdt1|gr	major facilitator superfamily domain containing 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-94838382-4	chr8	94838290	94838490	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026452)	promoter-TSS (NM_026452)	-27.0	NM_026452	67914.0	Mm.169234	NM_026452	ENSMUSG00000031782	Coq9	2310005O14Rik|C78387	coenzyme Q9	protein-coding	5.72248872116153	5.43074969600465	5.4004969198985	5.98935814541727	6.06601579528273	6.55603998087356	6.49737964521593	6.33117068890986	0.776403901927427	0.00127593783494351	0.0236732507376065
Merged-chr7-123374389-2	chr7	123374289	123374489	+	676.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A2-int|LTR|ERVL-MaLR	-3593.0	NM_025304	30949.0	Mm.260527	NM_025304	ENSMUSG00000030763	Lcmt1	AL033290|LCMT-1|Lcmt	leucine carboxyl methyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-61579012-4	chr8	61578939	61579139	+	860.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293772, intron 10 of 21)	intron (NM_001293772, intron 10 of 21)	12130.0	NM_001293774	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-165640439-2	chr1	165640339	165640539	+	565.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5898.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115048457-4	chr11	115048352	115048552	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199201).2	promoter-TSS (NM_199201).2	-157.0	NM_199201	382551.0	Mm.424732	NM_199201	ENSMUSG00000069607	Cd300ld3	AY457049|Cd300lh|Clm3|Lmir7|clm-3	CD300 molecule like family member D3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80848738-3	chr10	80848637	80848837	+	992.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ZP3AR|Satellite|Satellite	-4698.0	NM_001013758	237403.0	Mm.40213	NM_001013758	ENSMUSG00000051067	Lingo3	AI851712|LERN2	leucine rich repeat and Ig domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-35318369-4	chr7	35318247	35318447	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026181)	promoter-TSS (NM_026181)	93.0	NM_026181	67471.0	Mm.358705	NM_026181	ENSMUSG00000063808	Gpatch1	1300003A17Rik|ECGP|Gpatc1	G patch domain containing 1	protein-coding	5.01651781530291	5.37920219324925	4.01451526704563	4.97329853434008	5.10491775614979	4.26257585315697	4.78809554787225	4.12748381924024	-0.356072919322743	0.37643849239935	0.869600522734195
Merged-chr3-15586785-3	chr3	15586679	15586879	+	660.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-11714.0	NM_001173460	668101.0	Mm.423523	NM_001173460	ENSMUSG00000095028	Sirpb1b	-	signal-regulatory protein beta 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56810443-4	chr17	56810362	56810562	+	965.93335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009056, intron 1 of 16)	intron (NM_009056, intron 1 of 16)	20546.0	NM_009056	19725.0	Mm.102	NM_009056	ENSMUSG00000024206	Rfx2	5430432H19Rik	regulatory factor X, 2 (influences HLA class II expression)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-43391920-4	chr5	43391849	43392049	+	906.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-123620.0	NM_001135172	109323.0	Mm.275553	NM_175425	ENSMUSG00000061535	C1qtnf7	5530401N20Rik|8430425G24Rik|Ctrp7	C1q and tumor necrosis factor related protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-13553863-4	chr13	13553771	13553971	+	971.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-36538.0	NM_010748	17101.0	Mm.342337	NM_010748	ENSMUSG00000019726	Lyst	D13Sfk13|beige|bg	lysosomal trafficking regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-66107901-2	chr5	66107801	66108001	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001127382, intron 2 of 7)	MTC|LTR|ERVL-MaLR	-9722.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97660417-4	chr11	97660321	97660521	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2991.0	NM_139311	246198.0	Mm.23685	NM_139311	ENSMUSG00000038437	Mllt6	AI315037|Af17	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16167605-4	chr7	16167524	16167724	+	884.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR44A|LTR|ERVK	-7771.0	NM_001277988	17537.0	Mm.360516	NM_008627	ENSMUSG00000041420	Meis3	AI573393|Mrg2	Meis homeobox 3	protein-coding	1.57368062520045	0.920760113719051	1.31104966463879	1.86594621085448	1.77449162280451	0.924666531694244	0.907083005982905	2.04317405881559	0.186770730256177	0.889905832288496	0.998431161219273
Merged-chr10-116330643-2	chr10	116330543	116330743	+	743.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029928, intron 8 of 31)	intron (NM_029928, intron 8 of 31)	29269.0	NM_029928	19263.0	Mm.37213	NM_029928	ENSMUSG00000020154	Ptprb	3230402H02Rik|C130094E24|Ptpz|Rptpb|VE-PTP|Veptp	protein tyrosine phosphatase, receptor type, B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-14614445-2	chr3	14614345	14614545	+	606.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR33|LTR|ERVK	-3189.0	NM_001099674	69126.0	Mm.389020	NM_001099674	ENSMUSG00000078784	1810022K09Rik	AI746582|AL023036	RIKEN cDNA 1810022K09 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-30847704-4	chr3	30847608	30847808	+	876.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8242.0	NM_001134386	71862.0	Mm.272019	NM_027965	ENSMUSG00000037661	Gpr160	1700025D19Rik|GPCR150	G protein-coupled receptor 160	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-10876042-4	chr15	10875914	10876114	+	980.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR11A2|LTR|ERVK	46963.0	NR_040357	100502601.0	Mm.399434	NR_040357		Gm19276	-	predicted gene, 19276	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-36993575-4	chr8	36993459	36993659	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039220)	promoter-TSS (NM_001039220)	-16.0	NM_001039220	621080.0	Mm.373292	NM_001039220	ENSMUSG00000074384	AI429214	-	expressed sequence AI429214	protein-coding	3.76067625741249	3.85596626361407	4.22722128767224	2.80448264757792	4.21959596252649	3.17192014177859	4.15002452435561	3.97398214350731	0.270502349291332	0.608002049861623	0.974576632476413
Merged-chr9-37529779-3	chr9	37529678	37529878	+	937.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_136939, intron 1 of 6)	intron (NR_136939, intron 1 of 6)	1689.0	NM_027102	69524.0	Mm.41751	NM_027102	ENSMUSG00000001946	Esam	2310008D05Rik|Esam1|W117m	endothelial cell-specific adhesion molecule	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-6816399-4	chr17	6816299	6816499	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33619.0	NM_009510	22350.0	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-80194638-2	chr11	80194538	80194738	+	729.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028019, intron 3 of 4)	RMER19B|LTR|ERVK	10766.0	NM_028019	71956.0	Mm.22985	NM_028019	ENSMUSG00000020707	Rnf135	0610037N03Rik|2410006N06Rik	ring finger protein 135	protein-coding	0.167595787292656	0.184845177006521	0.179181535064362	0.689382926671368	0.537828437363662	0.534063176991656	0.180429628446987	0.696180995931567	1.19519816832547	0.551693085782394	1
Merged-chr8-126846317-4	chr8	126846205	126846405	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2715.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-72883898-2	chr5	72883798	72883998	+	675.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15450.0	NM_001113460	21682.0	Mm.319581	NM_013689	ENSMUSG00000029217	Tec	-	tec protein tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-37027804-2	chr17	37027704	37027904	+	776.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-4406.0	NM_010814	17441.0	Mm.210857	NM_010814	ENSMUSG00000076439	Mog	B230317G11Rik	myelin oligodendrocyte glycoprotein	protein-coding	0.365642018218568	0.21415771947313	0.0335600870259692	0.41860270983201	0.025234456253017	0.218620730609299	0.0345527249809161	0.424101940541249	-0.655248509463539	0.744451207135248	1
Merged-chr6-31105395-2	chr6	31105295	31105495	+	953.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_110471, intron 3 of 3)	intron (NR_110471, intron 3 of 3)	-42302.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-146445024-4	chr3	146444929	146445129	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5438.0	NM_028836	74245.0	Mm.45396	NM_028836	ENSMUSG00000028189	Ctbs	2210401K11Rik|CTB	chitobiase, di-N-acetyl-	protein-coding	4.3337332784566	4.52022920545514	3.94462697742133	4.4125374366567	4.40752369837177	4.55076790775532	3.8990213652405	4.38581220290259	0.0174660762083671	0.965358037732057	0.998431161219273
Merged-chr7-35380351-2	chr7	35380251	35380451	+	564.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027897, intron 10 of 14)	PB1D10|SINE|Alu	16416.0	NM_178643	101831.0	Mm.389855	NM_178643	ENSMUSG00000030493	Faap24	AW124591|AW538696|C230052I12Rik	Fanconi anemia core complex associated protein 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24884064-2	chr17	24883965	24884165	+	929.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011956, intron 5 of 6)	intron (NM_011956, intron 5 of 6)	2285.0	NM_001355396	26426.0	Mm.36718	NM_011956	ENSMUSG00000039183	Nubp2	D17Wsu11e	nucleotide binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-90000784-2	chr3	90000669	90000869	+	663.75	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001165984, exon 28 of 28)	3' UTR (NM_001165984, exon 28 of 28)	2009.0	NR_045749	100503469.0	Mm.440636	NR_045749	ENSMUSG00000105552	Gm19710	-	predicted gene, 19710	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-31107289-2	chr6	31107189	31107389	+	712.357178	f1_balb.idr|f1_c57bl6.idr	intron (NR_110471, intron 3 of 3)	intron (NR_110471, intron 3 of 3)	-44196.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-46251141-2	chr17	46251041	46251241	+	731.333374	f1_balb.idr|f1_c57bl6.idr	exon (NM_145353, exon 7 of 9)	exon (NM_145353, exon 7 of 9)	-3024.0	NM_001111142	224813.0	Mm.70999	NM_001111142	ENSMUSG00000071073	Lrrc73	Gm88	leucine rich repeat containing 73	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33251546-5	chr16	33251483	33251683	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_080557, exon 1 of 14)	exon (NM_080557, exon 1 of 14)	127.0	NM_080557	69150.0	Mm.28196	NM_080557	ENSMUSG00000022808	Snx4	1810036H14Rik|AI037066	sorting nexin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-97758143-4	chr4	97758033	97758233	+	824.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122952, intron 1 of 10)	intron (NM_001122952, intron 1 of 10)	-19493.0	NM_001122953	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-8245376-4	chr3	8245280	8245480	+	840.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	217718.0	NR_033512	620966.0	Mm.301719	NR_033512		Gm6194	1700003N22Rik|EG620966	transmembrane protein 189 pseudogene	pseudo	-0.551517770468642	-0.666680831728777	-0.669162711472859	-0.671058462071289	-0.548142157160955	-0.350294038789167	-0.378580830023586	-0.670728481036799	2.17030769121446	0.397826868393982	1
Merged-chr1-131294177-4	chr1	131294096	131294296	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081011, intron 21 of 22)	intron (NM_001081011, intron 21 of 22)	-14633.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	4.75155176706182	4.90057246432312	4.6051301964477	4.97962024549977	4.43543152102988	5.45825272761185	4.78329949903273	5.55932938430406	0.376699680622638	0.291055331606313	0.795742750399449
Merged-chr17-27547427-4	chr17	27547320	27547520	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9154.0	NM_001166536	15361.0	Mm.4438	NM_016660	ENSMUSG00000046711	Hmga1	AL023995|Hmga1a|Hmga1b|Hmgi|Hmgiy|Hmgy	high mobility group AT-hook 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-10370708-7	chr17	10370592	10370792	+	996.517883	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46090.0	NR_045461	76634.0	Mm.491052	NR_045461	ENSMUSG00000099384	1700110C19Rik	-	RIKEN cDNA 1700110C19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-44456859-2	chr10	44456759	44456959	+	998.333374	f1_balb.idr|f1_c57bl6.idr	exon (NM_007548, exon 2 of 7)	exon (NM_007548, exon 2 of 7)	1889.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-61553866-2	chr8	61553766	61553966	+	729.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001293772, intron 10 of 21)	intron (NM_001293772, intron 10 of 21)	37303.0	NM_001293774	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-130787721-4	chr4	130787580	130787780	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4857.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-100433076-2	chr9	100432976	100433176	+	572.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13B|LTR|ERVK	53397.0	NM_001033543	213208.0	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-32369157-1	chr4	32369057	32369257	+	748.0	f0_balb.idr	Intergenic	Intergenic	-48278.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85458558-2	chr12	85458458	85458658	+	782.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15332.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-149813526-2	chr4	149813426	149813626	+	672.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39259.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59647661-4	chr15	59647554	59647754	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144549)	promoter-TSS (NM_144549)	-1000.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-110385747-1	chr13	110385647	110385847	+	582.0	f1_balb.idr	Intergenic	Lx5c|LINE|L1	-9297.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	-2.18292257394068	-2.15545247547656	-2.03304972317742	-2.17058342868585	-2.18099422382073	-2.1536522739386	-2.16187909550322	-2.16936197735154	-0.683654500252594	0.846597994014493	1
Merged-chr12-108937046-4	chr12	108936944	108937144	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177602, intron 2 of 6)	intron (NM_177602, intron 2 of 6)	42772.0	NM_177602	212198.0	Mm.342082	NM_177602	ENSMUSG00000040877	Wdr25	B930090D16Rik	WD repeat domain 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-111570800-1	chr10	111570700	111570900	+	759.333313	f0_balb.idr	Intergenic	Intergenic	23473.0	NR_045344	71321.0	Mm.410785	NR_045344	ENSMUSG00000097082	4933440J02Rik	-	RIKEN cDNA 4933440J02 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-124857248-3	chr8	124857178	124857378	+	981.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025615, intron 2 of 6)	MurERV4-int|LTR|ERVK	5751.0	NM_025615	66523.0	Mm.436864	NM_025615	ENSMUSG00000031984	2810004N23Rik	3110004G14Rik|Ayu21-55|Gt(pU21)55Imeg|GtAyu21-55	RIKEN cDNA 2810004N23 gene	protein-coding	0.257172719821186	0.290578583991273	0.279856053424366	0.477874362868613	1.2197652444714	1.46746088579681	0.282238593622815	0.481802654298949	3.84998141217098	0.0367760593312553	0.272305311364167
Merged-chr6-125090263-2	chr6	125090163	125090363	+	754.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5718.0	NM_001346610	107932.0	Mm.333388	NM_145979	ENSMUSG00000063870	Chd4	9530019N15Rik|AA617397|BC005710|D6Ertd380e|Mi-2beta|mKIAA4075	chromodomain helicase DNA binding protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-84957798-4	chr17	84957689	84957889	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159496)	promoter-TSS (NM_001159496)	-79.0	NR_027930	68531.0	Mm.249695	NR_027929	ENSMUSG00000097047	1110020A21Rik	2600015P10Rik	RIKEN cDNA 1110020A21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70498811-2	chr11	70498711	70498911	+	720.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6463.0	NM_029360	75604.0	Mm.24400	NM_029360	ENSMUSG00000018919	Tm4sf5	2010003F10Rik|AI323987	transmembrane 4 superfamily member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-45236728-4	chr19	45236644	45236844	+	945.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1508.0	NM_010691	16814.0	Mm.116815	NM_010691	ENSMUSG00000025216	Lbx1	Lbx1h	ladybird homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-16500406-2	chr9	16500306	16500506	+	647.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-122175.0	NM_001080814	270120.0	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT atypical cadherin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-151429452-2	chr1	151429352	151429552	+	993.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026876, intron 1 of 14)	intron (NM_026876, intron 1 of 14)	910.0	NM_001357570	98685.0	Mm.289373	NM_026876	ENSMUSG00000053286	Trmt1l	1190005F20Rik|AW226554|C1orf25|Trm1-like|Trm1l	tRNA methyltransferase 1 like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-31789079-4	chr18	31788971	31789171	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357480)	promoter-TSS (NM_001357480)	-54.0	NM_001357480	69241.0	Mm.279898	NM_027002	ENSMUSG00000024258	Polr2d	2310002G05Rik|2610028L19Rik|HSRBP4|RBP4	polymerase (RNA) II (DNA directed) polypeptide D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19072343-4	chr7	19072239	19072439	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031255, intron 5 of 5)	B1F|SINE|Alu	-3861.0	NM_010058	13401.0	Mm.2852	NM_010058	ENSMUSG00000030410	Dmwd	DMR-N9|Dm9	dystrophia myotonica-containing WD repeat motif	protein-coding	4.23753304220292	5.51634475049379	4.89498863002661	4.55535332935858	4.27202495821291	5.54995930106126	4.92935368676219	4.37594723165403	-0.0071289464761056	0.986264840631225	0.998431161219273
Merged-chr10-128500284-2	chr10	128500184	128500384	+	972.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_131151, intron 1 of 1)	ID|SINE|ID	1037.0	NR_131151	654440.0	Mm.441262	NR_131150	ENSMUSG00000097353	A430046D13Rik	-	Riken cDNA A430046D13 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-29205342-2	chr6	29205242	29205442	+	641.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001302934, intron 7 of 14)	intron (NM_001302934, intron 7 of 14)	6955.0	NM_011829	23917.0	Mm.260707	NM_011829	ENSMUSG00000003500	Impdh1	B930086D20Rik|IMPDH-I	inosine monophosphate dehydrogenase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-83897204-2	chr8	83897112	83897312	+	933.7000119999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2886.0	NM_181039	330814.0	Mm.260733	NM_181039	ENSMUSG00000013033	Adgrl1	2900070I05Rik|AI182398|CLIBA|Lec2|Lphn1|mKIAA0821	adhesion G protein-coupled receptor L1	protein-coding	0.24285007838624	0.0299009429651035	0.0261314383865101	0.47567655206894	0.427594629592881	0.0307570370955262	0.0269588507707426	0.285287965097857	-0.0384493947771828	0.985603712631001	1
Merged-chr9-53535587-2	chr9	53535487	53535687	+	621.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007499, intron 1 of 62)	intron (NM_007499, intron 1 of 62)	1084.0	NM_007499	11920.0	Mm.5088	NM_007499	ENSMUSG00000034218	Atm	AI256621|C030026E19Rik	ataxia telangiectasia mutated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-31834452-4	chr19	31834346	31834546	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-34315.0	NM_001081074	69865.0	Mm.87538	NM_001081074	ENSMUSG00000052595	A1cf	1810073H04Rik|ACF64|ACF65|ASP|Acf|MCM|MerCreMer|Tg(Myh6-cre/Esr1*)1Jmk|mer	APOBEC1 complementation factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-99227759-4	chr5	99227721	99227921	+	826.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181318, intron 10 of 13)	intron (NM_181318, intron 10 of 13)	25106.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44110169-2	chr9	44110069	44110269	+	964.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001190314)	TTS (NM_001190314)	2860.0	NM_001190319	235312.0	Mm.227110	NM_145613	ENSMUSG00000079592	C1qtnf5	Ctrp5	C1q and tumor necrosis factor related protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-139504918-1	chr1	139504818	139505018	+	709.0	f1_balb.idr	intron (NM_031164, intron 2 of 11)	Lx3B|LINE|L1	3211.0	NM_031164	14060.0	Mm.30105	NM_031164	ENSMUSG00000026368	F13b	Cf-13b|Cf13b	coagulation factor XIII, beta subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118240140-2	chr11	118240040	118240240	+	937.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	8452.0	NM_001112699	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-74908486-4	chr14	74908401	74908601	+	964.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033439, intron 1 of 19)	intron (NM_001033439, intron 1 of 19)	39376.0	NM_001252132	380916.0	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-29371200-4	chr17	29371101	29371301	+	987.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159538, intron 9 of 15)	intron (NM_001159538, intron 9 of 15)	10287.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	2.21024305980805	2.12344379224577	2.24461064304139	3.03650427760382	3.43747699920166	3.5817450768278	3.82037085240404	2.18759371090019	1.61366279415586	0.0267821044013171	0.219189809303791
Merged-chr7-81346353-2	chr7	81346253	81346453	+	580.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_007755)	TTS (NM_007755)	-1119.0	NM_009092	20068.0	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-39700927-2	chr14	39700827	39701027	+	635.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4A|LINE|L1	45264.0	NR_045936	73591.0	Mm.65499	NR_045936	ENSMUSG00000101261	1700109I08Rik	-	RIKEN cDNA 1700109I08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-43520545-4	chr19	43520444	43520644	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010324, intron 1 of 8)	intron (NM_010324, intron 1 of 8)	4061.0	NM_010324	14718.0	Mm.19039	NM_010324	ENSMUSG00000025190	Got1	AI789014|Got-1|cAspAT|cCAT	glutamic-oxaloacetic transaminase 1, soluble	protein-coding	4.10572623840943	4.71186241656362	5.45418999433233	5.12130875214419	5.01712897120983	4.896100711529	5.80287692182223	4.82510183263356	0.312112931015175	0.411997081676813	0.894632176512742
Merged-chr11-22617725-4	chr11	22617676	22617876	+	924.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	105493.0	NM_153596	103765.0	Mm.221274	NM_153596	ENSMUSG00000049904	Tmem17	AI503894|AW049890	transmembrane protein 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129302728-3	chr2	129302623	129302823	+	781.799988	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010554, intron 6 of 6)	intron (NM_010554, intron 6 of 6)	5353.0	NR_040371	100503468.0	Mm.446943	NR_040371	ENSMUSG00000085498	Gm14023	-	predicted gene 14023	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-170898607-4	chr1	170898501	170898701	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13061.0	NM_023173	80915.0	Mm.34365	NM_023173	ENSMUSG00000026659	Dusp12	1190004O14Rik|AA027408|AW049275|ESTM36|LMW-DSP4|T-DSP4|VH1|mVH1	dual specificity phosphatase 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-43673798-4	chr2	43673700	43673900	+	965.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289593, intron 12 of 12)	intron (NM_001289593, intron 12 of 12)	-75024.0	NM_001301832	76117.0	Mm.217350	NM_153820	ENSMUSG00000049744	Arhgap15	5830480G12Rik	Rho GTPase activating protein 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-31936769-1	chr4	31936669	31936869	+	624.0	f0_balb.idr	Intergenic	Intergenic	-27338.0	NM_009316	26409.0	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-91208712-4	chr10	91208622	91208822	+	811.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_151510, exon 4 of 4)	non-coding (NR_151510, exon 4 of 4)	11897.0	NR_151510	102633753.0	Mm.416936	NR_151510		4930534H03Rik	-	RIKEN cDNA 4930534H03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-146521466-2	chr4	146521366	146521566	+	619.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045468, intron 2 of 2)	Lx3B|LINE|L1	6546.0	NM_001243139	100041433.0	Mm.441741	NM_001243138	ENSMUSG00000056300	Zfp981	Gm13247	zinc finger protein 981	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-94190029-2	chr8	94189929	94190129	+	759.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10940.0	NM_013602	17748.0	Mm.192991	NM_013602	ENSMUSG00000031765	Mt1	MT-I|Mt-1	metallothionein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-150677960-2	chr2	150677860	150678060	+	853.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20C1_MM|LTR|ERVK	-9720.0	NM_080575	68738.0	Mm.7044	NM_080575	ENSMUSG00000027452	Acss1	1110032O15Rik|AI788978|Acas2|Acas2l|AceCS2	acyl-CoA synthetase short-chain family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-130405477-2	chr5	130405377	130405577	+	821.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_181045, intron 1 of 6)	intron (NM_181045, intron 1 of 6)	-20846.0	NM_198665	381673.0	Mm.192133	NM_198665	ENSMUSG00000052014	A330070K13Rik	Gm1051	RIKEN cDNA A330070K13 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97179160-4	chr6	97179057	97179257	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081111)	promoter-TSS (NM_001081111)	-33.0	NM_001081111	232286.0	Mm.30893	NM_001081111	ENSMUSG00000030059	Tmf1	7030402D04Rik|Gm153|Tmf1`	TATA element modulatory factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-78086786-4	chr10	78086678	78086878	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17410.0	NM_015790	50723.0	Mm.17819	NM_015790	ENSMUSG00000000732	Icosl	AU044799|B7-H2|B7RP-1|B7h|BG071784|GI50|GL50|GL50-B|ICOS-L|Icoslg|LICOS|Ly115l|mKIAA0653	icos ligand	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53469233-4	chr4	53469135	53469335	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133891, intron 1 of 15)	L1MB8|LINE|L1	28822.0	NM_133891	100434.0	Mm.482207	NM_133891	ENSMUSG00000028412	Slc44a1	2210409B22Rik|4833416H08Rik|AW547365|CHTL1|CTL1|Cdw92	solute carrier family 44, member 1	protein-coding	3.01642951877801	3.71741514572322	4.92985494978048	3.64984836132872	3.75834983647291	3.91350265558927	4.12444679539882	3.81362803198922	-0.162401952060478	0.761804374761568	0.998431161219273
Merged-chr3-51333447-4	chr3	51333355	51333555	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023502, intron 1 of 9)	intron (NM_023502, intron 1 of 9)	7189.0	NM_001356358	69257.0	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85109284-2	chr12	85109184	85109384	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1549.0	NM_030225	78920.0	Mm.296221	NM_030225	ENSMUSG00000004789	Dlst	1600017E01Rik|4632413C10Rik|4930529O08Rik|DLTS	dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-14207014-4	chr2	14206919	14207119	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081310, intron 3 of 3)	intron (NM_001081310, intron 3 of 3)	-22395.0	NM_008625	17533.0	Mm.2019	NM_008625	ENSMUSG00000026712	Mrc1	AW259686|CD206|MR	mannose receptor, C type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-105223111-2	chr13	105223051	105223251	+	851.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360891, intron 5 of 7)	intron (NM_001360891, intron 5 of 7)	69863.0	NM_027934	71816.0	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	-0.662826441749988	-1.00555184936033	-1.01675512286785	-1.01992432642343	-0.654846858003193	-1.00312405325568	-1.01421894731451	-1.01959449741028	0.0418081237259606	0.989738874530268	1
Merged-chr3-9251450-4	chr3	9251380	9251580	+	844.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177660, exon 1 of 6)	exon (NM_177660, exon 1 of 6)	913.0	NM_177660	229055.0	Mm.103262	NM_177660	ENSMUSG00000069114	Zbtb10	4832414A18|AU021107|RINZF	zinc finger and BTB domain containing 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127513008-4	chr10	127512893	127513093	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1946.0	NM_001098789	407790.0	Mm.336856	NM_001098789	ENSMUSG00000040280	Ndufa4l2	BC064011	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-90651517-2	chr11	90651417	90651617	+	628.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_028011, intron 12 of 15)	intron (NM_028011, intron 12 of 15)	11482.0	NM_001357547	71943.0	Mm.167868	NM_028011	ENSMUSG00000020541	Tom1l1	2310045L10Rik|C80573|Srcasm	target of myb1-like 1 (chicken)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-19124943-4	chr10	19124842	19125042	+	928.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16807.0	NR_038021	100504265.0	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-73322757-1	chr12	73322657	73322857	+	542.0	f0_balb.idr	intron (NM_001037717, intron 5 of 15)	intron (NM_001037717, intron 5 of 15)	35909.0	NM_001037717	625098.0	Mm.32075	NM_001037717	ENSMUSG00000044712	Slc38a6	AW322671|EG625098	solute carrier family 38, member 6	protein-coding	-0.391519947623774	-0.379155563683154	-0.383213030318821	-0.0857807525134832	0.32696036866894	-0.182956201598865	-0.382318686013764	-0.385793208687058	1.8051218474688	0.478011082413772	1
Merged-chr12-13871603-2	chr12	13871503	13871703	+	609.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-243957.0	NR_136761	102639399.0	Mm.122052	NR_136761	ENSMUSG00000113666	Gm35725	-	predicted gene, 35725	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-34783179-4	chr11	34783113	34783313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033374, intron 1 of 51)	intron (NM_033374, intron 1 of 51)	692.0	NM_033374	94176.0	Mm.380679	NM_033374	ENSMUSG00000020143	Dock2	AI662014|AW122239|CED-5|Hch|MBC	dedicator of cyto-kinesis 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-143384022-2	chr4	143383922	143384122	+	734.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10419.0	NM_031377	83491.0	Mm.190607	NM_031377	ENSMUSG00000041805	Pramel1	-	preferentially expressed antigen in melanoma-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-29624929-4	chr2	29624844	29625044	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054050, intron 1 of 23)	intron (NM_054050, intron 1 of 23)	5224.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-33936447-4	chr5	33936360	33936560	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011914)	promoter-TSS (NM_011914)	-202.0	NM_011914	24116.0	Mm.332320	NM_011914	ENSMUSG00000029111	Nelfa	Whsc2|Whsc2h	negative elongation factor complex member A, Whsc2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-12991054-2	chr1	12990919	12991119	+	868.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_172841, exon 1 of 9)	5' UTR (NM_172841, exon 1 of 9)	116.0	NM_172841	240726.0	Mm.24481	NM_172841	ENSMUSG00000025938	Slco5a1	4732454B15|A630033C23Rik|AA407151	solute carrier organic anion transporter family, member 5A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-131262449-4	chr2	131262356	131262556	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355683)	promoter-TSS (NM_001355683)	-44.0	NM_001355683	74450.0	Mm.101264	NM_153501	ENSMUSG00000037514	Pank2	4933409I19Rik|AI642621	pantothenate kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-64076696-2	chr15	64076596	64076796	+	879.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3C|LINE|L1	-16248.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-95681244-2	chr10	95681144	95681344	+	976.3333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR12D|LTR|ERVK	-117098.0	NM_001358996	71207.0	Mm.24397	NM_027722	ENSMUSG00000020029	Nudt4	4933436C10Rik|DIPP-2|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P	nudix (nucleoside diphosphate linked moiety X)-type motif 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-39904940-2	chr1	39904840	39905040	+	637.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252202, intron 2 of 29)	intron (NM_001252202, intron 2 of 29)	4027.0	NM_008696	26921.0	Mm.491139	NM_008696	ENSMUSG00000026074	Map4k4	9430080K19Rik|AU043147|AU045934|AW046177|HGK|Nik	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94473563-3	chr10	94473446	94473646	+	759.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 2 of 4)	intron (NM_001359762, intron 2 of 4)	-41311.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-114722176-4	chr5	114722080	114722280	+	992.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_029992, exon 13 of 13)	3' UTR (NM_029992, exon 13 of 13)	2665.0	NR_105995	102465622.0		NR_105995	ENSMUSG00000098656	Mir7028	Gm27674|mmu-mir-7028	microRNA 7028	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91647047-4	chr16	91646959	91647159	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178880)	promoter-TSS (NM_178880)	-87.0	NM_001357351	14450.0	Mm.4505	NM_010256	ENSMUSG00000022962	Gart	Gaps|Prgs	phosphoribosylglycinamide formyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-170251786-2	chr2	170251704	170251904	+	608.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MurERV4_19-int|LTR|ERVK	-104557.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-64338101-4	chr1	64338018	64338218	+	911.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-194686.0	NM_009952	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-114728680-2	chr9	114728580	114728780	+	935.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID|SINE|ID	-2523.0	NM_026036	67213.0	Mm.28858	NM_026036	ENSMUSG00000032434	Cmtm6	2810051A14Rik|AA536733|Cklfsf6	CKLF-like MARVEL transmembrane domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135781046-2	chr5	135780946	135781146	+	561.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008617, intron 1 of 8)	intron (NM_008617, intron 1 of 8)	2397.0	NM_008617	17448.0	Mm.297096	NM_008617	ENSMUSG00000019179	Mdh2	MDH|Mdh-2|Mor-1|Mor1	malate dehydrogenase 2, NAD (mitochondrial)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-99224982-4	chr4	99224863	99225063	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175029, intron 7 of 10)	intron (NM_175029, intron 7 of 10)	30816.0	NM_001145967	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	3.34464527128255	1.61297404668774	2.82407856458154	3.33351426628806	2.81382275542248	3.63442282728175	2.72790542307487	2.36855692660751	0.041343295422688	0.957201298035057	0.998431161219273
Merged-chr16-21216198-4	chr16	21216088	21216288	+	839.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010143, intron 3 of 15)	intron (NM_010143, intron 3 of 15)	11393.0	NM_010143	13845.0	Mm.6972	NM_010143	ENSMUSG00000005958	Ephb3	AW456895|Cek10|Etk2|HEK2|MDK5|Sek4|Tyro6	Eph receptor B3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-18689765-6	chr2	18689874	18690074	+	851.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-9048.0	NM_001001334	381350.0	Mm.330024	NM_001001334	ENSMUSG00000037708	Spag6	Spag6l	sperm associated antigen 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-53617399-4	chr11	53617290	53617490	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027491)	promoter-TSS (NR_027491)	-52.0	NR_027491	16189.0	Mm.276360	NM_021283	ENSMUSG00000000869	Il4	BSF-1|Il-4	interleukin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-65742270-7	chr18	65742199	65742399	+	830.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177028, exon 11 of 15)	exon (NM_177028, exon 11 of 15)	44031.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	1.61979624376956	2.53392012214237	1.53959642225096	1.72207858341572	2.46322785398628	3.94032591746829	2.17302387632787	2.24476788768256	2.05494990634265	0.0218031597316296	0.189836219492084
Merged-chr15-53673634-3	chr15	53673543	53673743	+	834.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177225, intron 3 of 4)	L2|LINE|L2	-59364.0	NR_039538	100628567.0		NR_039538	ENSMUSG00000104794	Mir28c	mmu-mir-28c	microRNA 28c	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-43039614-3	chr5	43039540	43039740	+	905.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A|LTR|ERVL-MaLR	-193823.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-14243830-3	chr19	14243743	14243943	+	913.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	192107.0	NR_152176	667433.0	Mm.128913	NR_152176		Gm8630	EG667433	predicted gene 8630	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-84761888-1	chr12	84761788	84761988	+	1000.0	f0_balb.idr	intron (NM_023409, intron 2 of 3)	RSINE1|SINE|B4	11224.0	NM_023409	67963.0	Mm.282556	NM_023409	ENSMUSG00000021242	Npc2	2700012J19Rik|AA408070|AU045843|HE1	NPC intracellular cholesterol transporter 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-30508152-4	chr18	30508039	30508239	+	889.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	235274.0	NR_151699	225326.0	Mm.194127	NM_181414	ENSMUSG00000033628	Pik3c3	5330434F23Rik|Vps34	phosphatidylinositol 3-kinase catalytic subunit type 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67072077-4	chr10	67071966	67072166	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178606, intron 1 of 7)	intron (NM_178606, intron 1 of 7)	24922.0	NM_001204915	28193.0	Mm.41272	NM_178606	ENSMUSG00000019873	Reep3	D10Ucla1	receptor accessory protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-6009457-2	chr17	6009357	6009557	+	544.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357667, intron 7 of 24)	Tigger17c|DNA|TcMar-Tigger	1877.0	NM_001290698	20975.0	Mm.236068	NM_011523	ENSMUSG00000023805	Synj2	AI481647|SJ2|mKIAA0348	synaptojanin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-76833118-3	chr5	76833015	76833215	+	864.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7484.0	NM_001163793	320827.0	Mm.101504	NM_001163793	ENSMUSG00000036377	C530008M17Rik	2810489J07Rik|4930529A19Rik|4931405B09Rik|Kiaa1211|mKIAA1211	RIKEN cDNA C530008M17 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-22896009-3	chr5	22895912	22896112	+	844.944458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359998, intron 1 of 3)	intron (NM_001359998, intron 1 of 3)	-149128.0	NR_027362	330052.0	Mm.459265	NR_027362	ENSMUSG00000105076	A930003O13Rik	-	RIKEN cDNA A930003O13 gene	ncRNA	2.80886950159074	1.82985903580746	3.54240400745608	3.55424834869054	2.4415730916818	1.84369107766662	2.37800315537893	3.06237932284884	-1.0808235773685	0.173323210980245	0.640902961210202
Merged-chr15-80073612-2	chr15	80073512	80073712	+	788.700012	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4967.0	NR_028282	100302601.0		NR_028282	ENSMUSG00000077734	Snord83b	MBII-10	small nucleolar RNA, C/D box 83B	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-52065829-3	chr11	52065705	52065905	+	646.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166654, intron 13 of 13)	BGLII_B|LTR|ERVK	-33019.0	NM_019411	19052.0	Mm.260288	NM_019411	ENSMUSG00000020349	Ppp2ca	PP2A|R75353	protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-23711458-2	chr13	23711358	23711558	+	689.333313	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010424)	promoter-TSS (NM_010424)	-604.0	NM_010424	15216.0	Mm.2681	NM_010424	ENSMUSG00000006611	Hfe	MR2	hemochromatosis	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33415737-2	chr16	33415637	33415837	+	710.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358569, intron 1 of 8)	RSINE1|SINE|B4	15292.0	NM_001358569	22661.0	Mm.392667	NM_011749	ENSMUSG00000022811	Zfp148	2210405J08Rik|AI480666|AW045217|BERF-1|BFCOL1|ZBP-89|Znf148	zinc finger protein 148	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-23761987-2	chr13	23761887	23762087	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178192)	promoter-TSS (NM_178192)	399.0	NM_013550	360198.0	Mm.221301	NM_013550	ENSMUSG00000069265	Hist1h3a	-	histone cluster 1, H3a	protein-coding	-2.18308165884198	-2.15547475440471	-2.16382331017202	-2.1706810624505	-2.18114370519566	-2.15366558754311	-2.03057248461154	-2.16945352807143	0.759018020146679	0.829933115115583	1
Merged-chr15-8642416-3	chr15	8642281	8642481	+	780.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_148938, intron 7 of 9)	intron (NM_148938, intron 7 of 9)	68426.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-100832296-4	chr13	100832170	100832370	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022885, intron 1 of 15)	intron (NM_022885, intron 1 of 15)	1157.0	NM_022885	69048.0	Mm.402215	NM_022885	ENSMUSG00000021629	Slc30a5	1810010K08Rik|AF233321|ZNT5|ZTL1|ZnT-5|Zntl1	solute carrier family 30 (zinc transporter), member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-37754348-3	chr3	37754245	37754445	+	794.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29985.0	NM_198657	381438.0	Mm.490549	NM_198657	ENSMUSG00000058174	Gm5148	EG381438	predicted gene 5148	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124714805-2	chr6	124714705	124714905	+	586.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007531, intron 4 of 8)	intron (NM_007531, intron 4 of 8)	2516.0	NM_007531	12034.0	Mm.36241	NM_007531	ENSMUSG00000004264	Phb2	AU044498|BAP|Bap37|Bcap37|REA	prohibitin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-25022738-4	chr16	25022653	25022853	+	953.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36886.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-76505062-1	chr14	76504962	76505162	+	549.0	f0_balb.idr	intron (NM_009366, intron 1 of 2)	intron (NM_009366, intron 1 of 2)	552.0	NM_009366	21807.0	Mm.153272	NM_009366	ENSMUSG00000022010	Tsc22d1	AA589566|AW105905|Egr5|TSC-22|Tgfb1i4|Tsc|Tsc22	TSC22 domain family, member 1	protein-coding	0.841766688070373	0.55779297286436	0.546121629594783	1.45678617547973	1.19469043068054	0.560397754130642	0.548712485423769	1.54989330410778	0.521178349266957	0.756232504104881	0.998431161219273
Merged-chr2-27043668-2	chr2	27043568	27043768	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15670.0	NM_001177627	227659.0	Mm.41203	NM_172659	ENSMUSG00000036067	Slc2a6	A330096C23|F630103L12Rik|Glut6|Glut9	solute carrier family 2 (facilitated glucose transporter), member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88338699-2	chr3	88338599	88338799	+	699.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_178246, intron 1 of 21)	B1_Mus2|SINE|Alu	2439.0	NM_178246	229512.0	Mm.439830	NM_173188	ENSMUSG00000001415	Smg5	BC024683|mKIAA1089	Smg-5 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-124346771-2	chr14	124346671	124346871	+	637.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_207667, intron 1 of 4)	Lx5|LINE|L1	-154225.0	NM_010201	14169.0	Mm.206362	NM_010201	ENSMUSG00000025551	Fgf14	FHF-4|Fhf4|Tg(tetO-MAPT*P301L)4510Kha|mFHF-4(1B)	fibroblast growth factor 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-84532478-3	chr2	84532370	84532570	+	664.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A3|LTR|ERVL-MaLR	-25597.0	NR_046046	672763.0	Mm.491046	NR_046046	ENSMUSG00000087362	Gm13710	-	predicted gene 13710	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-52669677-4	chr5	52669576	52669776	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172490)	promoter-TSS (NM_172490)	25.0	NM_172490	211006.0	Mm.244719	NM_172490	ENSMUSG00000029173	Sepsecs	AA986712|D5Ertd135e|SLA|SecS	Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase	protein-coding	5.44180637994632	5.29863830855102	6.20075924754585	4.04961050215015	5.54402515298902	5.65922987156003	6.05925770293768	5.10271775916432	0.215163914819038	0.570449471547688	0.962718661854691
Merged-chr15-74960102-2	chr15	74959988	74960188	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001164036)	TTS (NM_001164036)	4982.0	NM_001164040	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	0.104752464921933	0.12451752624901	0.11806772178049	0.429223390596013	0.105993306771811	0.768912151339104	0.822656048494867	0.287659854742367	2.48345718918086	0.227757629187429	1
Merged-chr10-93162751-2	chr10	93162651	93162851	+	708.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_035452)	promoter-TSS (NR_035452)	-34.0	NR_035452	100316689.0		NR_035452	ENSMUSG00000089214	Mir1931	mir-1931|mmu-mir-1931	microRNA 1931	ncRNA	1.02863459963939	0.596880261860976	0.583249666747549	1.70113407437516	1.03957400295705	0.599912139732229	0.58628198902791	1.71278308576963	0.0314882487419853	0.984575447775888	0.998431161219273
Merged-chr1-186749402-4	chr1	186749330	186749530	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026041)	promoter-TSS (NM_026041)	-72.0	NM_026041	67223.0	Mm.289841	NM_026041	ENSMUSG00000001305	Rrp15	2810430M08Rik|5430437H21Rik	ribosomal RNA processing 15 homolog (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-87909648-4	chr3	87909558	87909758	+	855.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001331051, intron 1 of 6)	intron (NM_001331051, intron 1 of 6)	2808.0	NM_001331052	15191.0	Mm.292208	NM_008231	ENSMUSG00000004897	Hdgf	AI118077|D3Ertd299e	hepatoma-derived growth factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-8057010-2	chr5	8056910	8057110	+	990.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080974, intron 1 of 7)	intron (NM_001080974, intron 1 of 7)	468.0	NM_001080974	109552.0	Mm.96211	NM_025618	ENSMUSG00000003161	Sri	2210417O06Rik|2900070H08Rik|Sor	sorcin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-144245714-4	chr2	144245627	144245827	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20475.0	NR_030762	100313519.0	Mm.453538	NR_030762	ENSMUSG00000077714	Snord17	MBI-43	small nucleolar RNA, C/D box 17	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-107437286-4	chr8	107437165	107437365	+	777.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025830, intron 1 of 23)	intron (NM_025830, intron 1 of 23)	867.0	NM_025830	66894.0	Mm.390058	NM_025830	ENSMUSG00000031930	Wwp2	1300010O06Rik|AA690238|AIP2|AW554328	WW domain containing E3 ubiquitin protein ligase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-35068117-2	chr10	35068017	35068217	+	835.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR26_Mus|LTR|ERVK	584717.0	NM_010237	14302.0	Mm.332432	NM_010237	ENSMUSG00000019779	Frk	BSK|BSK/IYK|C85044|GTK|RAK	fyn-related kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-14959612-3	chr10	14959520	14959720	+	983.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	199331.0	NM_008703	18101.0	Mm.487342	NM_008703	ENSMUSG00000019865	Nmbr	BB182387	neuromedin B receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167253704-4	chr2	167253604	167253804	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13167.0	NM_008968	19223.0	Mm.2339	NM_008968	ENSMUSG00000017969	Ptgis	Cyp8|Cyp8a1|Pgis	prostaglandin I2 (prostacyclin) synthase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-30865340-2	chr14	30865240	30865440	+	979.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028839, intron 3 of 7)	intron (NM_028839, intron 3 of 7)	-13917.0	NM_181390	66175.0	Mm.220895	NM_181390	ENSMUSG00000042485	Mustn1	1110028G01Rik|Mustang	musculoskeletal, embryonic nuclear protein 1	protein-coding	0.119337591011082	0.144063825124112	0.648801460077399	0.129818221955222	0.667326448378483	1.16034418263732	0.137830299006236	0.130912023941378	1.9193652645225	0.355702007746355	1
Merged-chr14-73238620-4	chr14	73238478	73238678	+	872.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_175116, exon 1 of 1)	5' UTR (NM_175116, exon 1 of 1)	687.0	NM_175116	67168.0	Mm.390681	NM_175116	ENSMUSG00000033446	Lpar6	2610302I02Rik|P2ry5|P2y5	lysophosphatidic acid receptor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-86523424-3	chr6	86523173	86523373	+	589.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	2916.0	NM_011865	23983.0	Mm.274146	NM_011865	ENSMUSG00000051695	Pcbp1	WBP17|[a]CP-1|alphaCP-1|hnRNP E1|hnRNP-E1	poly(rC) binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-45041137-2	chr9	45041037	45041237	+	562.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1207.0	NM_007962	14012.0	Mm.33240	NM_007962	ENSMUSG00000032092	Mpzl2	Eva|Eva1	myelin protein zero-like 2	protein-coding	0.0753969220690701	0.113996563652619	1.38703268789818	0.0920336967160233	0.0779152898888875	0.116711293465907	1.40597999102608	0.0937458192319581	0.0413660174825526	0.98997745679989	0.998431161219273
Merged-chr9-22157686-2	chr9	22157586	22157786	+	701.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001082532, intron 1 of 1)	intron (NM_001082532, intron 1 of 1)	840.0	NM_001082532	66268.0	Mm.28924	NM_025457	ENSMUSG00000010607	Pigyl	1810008A14Rik|PIG-Y|Pigy	phosphatidylinositol glycan anchor biosynthesis, class Y-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-117211596-4	chr13	117211503	117211703	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8970.0	NM_010330	13723.0	Mm.274926	NM_010330	ENSMUSG00000021728	Emb	AL022799|Gp70	embigin	protein-coding	4.42294085295805	4.94861838678882	4.43079559875701	4.7582858367693	4.37236016563412	4.71015399061479	4.02086530836727	4.61945366377364	-0.252333304781941	0.503186994770655	0.939787919021146
Merged-chr11-11812174-4	chr11	11812067	11812267	+	930.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3205.0	NM_001163360	60530.0	Mm.236114	NM_021891	ENSMUSG00000035455	Fignl1	-	fidgetin-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81266778-4	chr10	81266664	81266864	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025317, intron 1 of 2)	CpG	162.0	NM_025317	66047.0	Mm.43397	NM_025317	ENSMUSG00000034932	Mrpl54	0610008M19Rik|D10Sut1e	mitochondrial ribosomal protein L54	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120427239-2	chr8	120427139	120427339	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61627.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-43218339-4	chr5	43218242	43218442	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028417, intron 1 of 7)	intron (NR_028417, intron 1 of 7)	-15121.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-121855596-3	chr2	121855500	121855700	+	933.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11370.0	NM_199038	319996.0	Mm.292109	NM_177054	ENSMUSG00000060227	Casc4	D130060C09Rik|VGFG2573	cancer susceptibility candidate 4	protein-coding	2.56450813229686	1.82784067708377	2.70561145920514	2.42916469264966	1.17620752314801	1.30543922094615	3.40335282748663	2.20481426770337	-0.0693976774293934	0.946218605290296	0.998431161219273
Merged-chr10-30677151-3	chr10	30677030	30677230	+	824.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358842, intron 9 of 14)	intron (NM_001358842, intron 9 of 14)	-21263.0	NM_001111267	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-37772035-4	chr2	37771942	37772142	+	946.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4207.0	NM_001163566	241324.0	Mm.392369	NM_001163566	ENSMUSG00000035403	Crb2	5930402A21|BC043114	crumbs family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-130171708-4	chr5	130171609	130171809	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199059)	promoter-TSS (NM_001199059)	-110.0	NM_001199059	56715.0	Mm.288639	NM_019983	ENSMUSG00000025340	Rabgef1	Rab5ef|Rabex5|Rin2	RAB guanine nucleotide exchange factor (GEF) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44857258-4	chr7	44857150	44857350	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290767)	promoter-TSS (NM_001290767)	104.0	NM_001290766	59047.0	Mm.238254	NM_021549	ENSMUSG00000002963	Pnkp	1810009G08Rik|PNK	polynucleotide kinase 3'- phosphatase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105603209-2	chr8	105603109	105603309	+	766.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-2020.0	NM_001081241	75687.0	Mm.41261	NM_001081241	ENSMUSG00000038604	Ripor1	2310066E14Rik|AI837433|Fam65a	RHO family interacting cell polarization regulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153259789-2	chr2	153259689	153259889	+	828.333313	f1_balb.idr|f1_c57bl6.idr	exon (NM_080463, exon 5 of 7)	exon (NM_080463, exon 5 of 7)	18257.0	NM_080463	140484.0	Mm.293761	NM_080463	ENSMUSG00000046020	Pofut1	O-FucT-1|mKIAA0180	protein O-fucosyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76344546-2	chr15	76344446	76344646	+	839.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_025567, intron 2 of 6)	intron (NM_025567, intron 2 of 6)	1023.0	NM_025567	66445.0	Mm.29196	NM_025567	ENSMUSG00000022551	Cyc1	2610002H19Rik|AA408921|Cyct1	cytochrome c-1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166715488-2	chr2	166715347	166715547	+	884.416626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1615.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-61403429-2	chr3	61403329	61403529	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR25A|LTR|ERVK	38922.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-105300755-3	chr14	105300660	105300860	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029561, intron 5 of 7)	intron (NM_029561, intron 5 of 7)	42087.0	NM_001190989	76273.0	Mm.290669	NM_029561	ENSMUSG00000053253	Ndfip2	0710001O20Rik|2810436B12Rik|9130207N19Rik|N4wbp5a|mKIAA1165	Nedd4 family interacting protein 2	protein-coding	2.06520504744899	2.48049621149701	3.21859582739673	3.10153215899281	6.08039314488054	6.75856095193905	6.51674682655178	6.22900489674588	4.5378113252993	3.90543042499412e-26	8.78575391982739e-23
Merged-chr7-82649278-3	chr7	82649154	82649354	+	889.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177894)	promoter-TSS (NM_177894)	640.0	NM_175317	101592.0	Mm.238020	NM_175317	ENSMUSG00000038563	Efl1	4932434J20Rik|6030468D11Rik|AI451340|AU019507|AU022896|D7Ertd791e|Eftud1	elongation factor like GPTase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-49181226-2	chr13	49181126	49181326	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6321.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-111837001-4	chr10	111836918	111837118	+	965.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37358.0	NR_046029	629206.0	Mm.391444	NR_046029	ENSMUSG00000112533	Gm20758	-	predicted gene, 20758	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-65672857-2	chr6	65672757	65672957	+	730.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_172399, intron 1 of 3)	CpG	1246.0	NM_172399	68169.0	Mm.52392	NM_172399	ENSMUSG00000049001	Ndnf	A930038C07Rik|epidermacan	neuron-derived neurotrophic factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-47397244-2	chr19	47397144	47397344	+	550.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008018, intron 3 of 14)	RSINE1|SINE|B4	67167.0	NM_001164717	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4000274-4	chr19	4000193	4000393	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025529)	promoter-TSS (NM_025529)	-287.0	NM_025529	66387.0	Mm.259222	NM_025529	ENSMUSG00000110949	Nudt8	2310039H17Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-35117542-4	chr9	35117421	35117621	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009178)	promoter-TSS (NM_009178)	-657.0	NM_009178	20443.0	Mm.275973	NM_009178	ENSMUSG00000032038	St3gal4	SIAT4-C|ST3Gal IV|ST3GalIV|Siat4c	ST3 beta-galactoside alpha-2,3-sialyltransferase 4	protein-coding	4.36793100897849	3.78067186384665	2.96210589770231	4.61855908836727	3.75329275357254	4.95019293855278	3.99704745915937	4.43189371988198	0.363907922390397	0.469289742004101	0.924757197727779
Merged-chr8-70535150-2	chr8	70535050	70535250	+	635.125	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001199631, exon 9 of 9)	3' UTR (NM_001199631, exon 9 of 9)	-4525.0	NM_007924	13716.0	Mm.271973	NM_007924	ENSMUSG00000070002	Ell	Ell1|Men	elongation factor RNA polymerase II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-79511706-4	chr15	79511589	79511789	+	851.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-4719.0	NM_134090	105785.0	Mm.298199	NM_134090	ENSMUSG00000010830	Kdelr3	AI173274	KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-98703548-3	chr7	98703447	98703647	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_144495)	promoter-TSS (NR_144495)	300.0	NM_028410	72981.0	Mm.4428	NM_028410	ENSMUSG00000030753	Thap12	2900052B10Rik|Dap4|Prkrir|Rpkrir	THAP domain containing 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-37490925-3	chr1	37490866	37491066	+	809.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173870, intron 4 of 15)	L1MC4|LINE|L1	-2361.0	NR_024017	77633.0	Mm.483177	NR_024017	ENSMUSG00000103948	4930594C11Rik	-	G1 to S phase transition pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10918478-2	chr19	10918378	10918578	+	571.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_009580, exon 4 of 12)	exon (NM_009580, exon 4 of 12)	2123.0	NM_009580	22786.0	Mm.24767	NM_009580	ENSMUSG00000024734	Zp1	-	zona pellucida glycoprotein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-125177919-4	chr5	125177777	125177977	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253905, intron 1 of 42)	CpG	1337.0	NM_001253905	20602.0	Mm.278646	NM_011424	ENSMUSG00000029478	Ncor2	N-CoR|SMRT|SMRTe	nuclear receptor co-repressor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-74944882-4	chr7	74944783	74944983	+	873.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MEd|LINE|L1	-85328.0	NR_131122	75205.0	Mm.399304	NR_131122	ENSMUSG00000108803	4930533N22Rik	Gm44904	RIKEN cDNA 4930533N22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-92180878-2	chr1	92180777	92180977	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_207225)	promoter-TSS (NM_207225)	-536.0	NM_207225	208727.0	Mm.318567	NM_207225	ENSMUSG00000026313	Hdac4	4932408F19Rik|HD4	histone deacetylase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-80098731-2	chr15	80098631	80098831	+	600.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_207708, intron 1 of 3)	intron (NM_207708, intron 1 of 3)	7397.0	NM_207708	20972.0	Mm.230301	NM_009303	ENSMUSG00000022415	Syngr1	R75468|Syngr1b|p29	synaptogyrin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-109750866-4	chr8	109750774	109750974	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13135.0	NM_001080930	52335.0	Mm.276770	NM_001080930	ENSMUSG00000069895	Atxn1l	AW558552|Boat|C330011L24Rik|D6Mgi37|D8Ertd587e	ataxin 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-142391166-4	chr6	142391075	142391275	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025872, intron 1 of 4)	intron (NM_025872, intron 1 of 4)	3932.0	NM_025872	66964.0	Mm.3676	NM_025872	ENSMUSG00000030245	Golt1b	2310061A22Rik|AA407874|AU024291|CGI-141	golgi transport 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-67814661-4	chr5	67814543	67814743	+	906.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009727, exon 2 of 36)	exon (NM_009727, exon 2 of 36)	32788.0	NM_009727	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41335023-2	chr19	41334923	41335123	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 2 of 16)	B2_Mm1t|SINE|B2	50047.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81301359-4	chr15	81301256	81301456	+	791.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49494.0	NR_077230	78102.0	Mm.296832	NR_077229	ENSMUSG00000115970	8430426J06Rik	-	RIKEN cDNA 8430426J06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4257182-4	chr19	4257080	4257280	+	992.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6698.0	NR_105951	102465595.0		NR_105951	ENSMUSG00000099290	Mir6985	Gm27719|mmu-mir-6985	microRNA 6985	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-34859079-2	chr9	34858979	34859179	+	580.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001190912, intron 1 of 15)	MIR|SINE|MIR	-257649.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-119365435-4	chr9	119365328	119365528	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359699, intron 3 of 17)	B3A|SINE|B2	8047.0	NM_001359699	102448.0	Mm.219497	NM_001033209	ENSMUSG00000035769	Xylb	AI132223|AI327421	xylulokinase homolog (H. influenzae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-31759155-1	chr2	31759055	31759255	+	552.0	f1_balb.idr	promoter-TSS (NM_009594)	promoter-TSS (NM_009594)	-784.0	NM_009594	11350.0	Mm.1318	NM_009594	ENSMUSG00000026842	Abl1	AI325092|Abl|E430008G22Rik|c-Abl	c-abl oncogene 1, non-receptor tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-47991143-4	chr8	47991061	47991261	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133791)	promoter-TSS (NM_133791)	-610.0	NM_133791	52357.0	Mm.235074	NM_133791	ENSMUSG00000031563	Wwc2	5330431C14Rik|AU022508|C85457|D8Ertd594e	WW, C2 and coiled-coil domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-149733641-1	chr4	149733541	149733741	+	685.0	f1_balb.idr	intron (NM_001284270, intron 1 of 10)	intron (NM_001284270, intron 1 of 10)	4129.0	NM_001284273	230917.0	Mm.266704	NM_177672	ENSMUSG00000044700	Tmem201	AV028368|D4Ertd429e|Net5|Samp1	transmembrane protein 201	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-73428600-2	chr13	73428500	73428700	+	778.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38783.0	NM_145376	210992.0	Mm.284649	NM_145376	ENSMUSG00000021608	Lpcat1	2900035H07Rik|Aytl2|BB137372|BC005662|C87117|LPCAT|rd11	lysophosphatidylcholine acyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53136714-2	chr4	53136614	53136814	+	588.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 2 of 49)	intron (NM_013454, intron 2 of 49)	23181.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	-0.413270832553205	0.248879758316469	-0.403519686790488	-0.4071766335812	-0.41236239857827	0.260274020124072	-0.402476173372258	-0.406537021983025	0.0394809277679939	0.98817139586833	1
Merged-chr5-140795420-3	chr5	140795313	140795513	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010302, intron 1 of 3)	intron (NM_010302, intron 1 of 3)	35018.0	NM_010302	14673.0	Mm.370185	NM_010302	ENSMUSG00000000149	Gna12	AI414047|AI504261|Galpha12	guanine nucleotide binding protein, alpha 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-63176208-2	chr1	63176108	63176308	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018796)	promoter-TSS (NM_018796)	614.0	NM_145518	227197.0	Mm.290791	NM_145518	ENSMUSG00000025968	Ndufs1	5830412M15Rik|9930026A05Rik	NADH dehydrogenase (ubiquinone) Fe-S protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-12755289-4	chr17	12755192	12755392	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010515, intron 1 of 47)	intron (NM_010515, intron 1 of 47)	13981.0	NR_027784	104103.0	Mm.26553	NR_002853	ENSMUSG00000078247	Airn	2810051F02Rik|2810434M15Rik|AI256653|AI597500|AW049873|Air|B930018I07Rik|D17Ertd663e|IGF2RAS	antisense Igf2r RNA	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117201713-3	chr8	117201623	117201823	+	943.285706	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081151, intron 9 of 10)	ID_B1|SINE|B4	43588.0	NM_001081151	209239.0	Mm.132992	NM_001081151	ENSMUSG00000052557	Gan	A330045G18|gigaxonin	giant axonal neuropathy	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-55023891-4	chr1	55023779	55023979	+	772.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031179, intron 1 of 24)	(GGAA)n|Simple_repeat|Simple_repeat	3599.0	NM_031179	81898.0	Mm.279736	NM_031179	ENSMUSG00000025982	Sf3b1	155kDa|2810001M05Rik|AA409119|Prp10|SAP155|SF3b155|TA-8|Targ4	splicing factor 3b, subunit 1	protein-coding	-0.118187147575937	-0.362843876885421	-0.366732253983608	-0.369723763951825	-0.373938549894544	-0.361965669337309	-0.0445893768969843	0.246481808348201	1.94275028486284	0.445388063302902	1
Merged-chr5-72219819-4	chr5	72219713	72219913	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_003966, intron 1 of 22)	intron (NR_003966, intron 1 of 22)	16470.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-32181425-4	chr19	32181309	32181509	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 5 of 9)	intron (NM_144792, intron 5 of 9)	29604.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-30231446-2	chr11	30231356	30231556	+	618.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11684.0	NM_175836	20742.0	Mm.123110	NM_009260	ENSMUSG00000020315	Sptbn1	9930031C03Rik|AL033301|SPTB2|Spnb-2|Spnb2|elf1|elf3|mKIAA4049	spectrin beta, non-erythrocytic 1	protein-coding	2.34215616565693	1.21199122562932	2.28656065680408	1.74484586143562	2.02408885725219	1.21782073135253	1.80882616412872	2.55984598491916	0.0512399017711733	0.962332499387713	0.998431161219273
Merged-chr11-3155466-5	chr11	3155443	3155643	+	1000.0	f0_balb.idr|f1_balb.idr	intron (NM_030207, intron 12 of 32)	intron (NM_030207, intron 12 of 32)	31522.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123150332-4	chr5	123150181	123150381	+	940.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040398, intron 6 of 16)	intron (NM_001040398, intron 6 of 16)	8088.0	NM_001040398	208043.0	Mm.250391	NM_177581	ENSMUSG00000038384	Setd1b	AA516740|BC035291|KMT2G|mKIAA1076	SET domain containing 1B	protein-coding	1.60464959256344	0.845453956015843	0.828314766343423	1.70676255747506	0.98910219997311	1.85473875789926	0.832133237465631	1.8994281296841	0.568590610126263	0.685679815858319	0.996533206832645
Merged-chr3-133579979-2	chr3	133579879	133580079	+	560.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35589.0	NM_001346736	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-55503490-2	chr16	55503390	55503590	+	638.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	8759.0	NR_039578	100628589.0		NR_039578	ENSMUSG00000093292	Mir5118	mmu-mir-5118|mu-mir-5118	microRNA 5118	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-142384455-4	chr7	142384384	142384584	+	917.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009983, intron 2 of 8)	intron (NM_009983, intron 2 of 8)	3386.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-75190952-2	chr1	75190852	75191052	+	840.625	f1_balb.idr|f1_c57bl6.idr	intron (NR_109938, intron 1 of 15)	intron (NR_109938, intron 1 of 15)	1058.0	NM_001003917	245860.0	Mm.238266	NM_001003917	ENSMUSG00000033124	Atg9a	AU019532|Apg9l1|Atg9|Atg9l1	autophagy related 9A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-77253749-2	chr10	77253649	77253849	+	747.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	5474.0	NR_026944	100169878.0	Mm.420901	NR_026944	ENSMUSG00000078444	Gm10941	-	predicted gene 10941	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-78577354-4	chr16	78577258	78577458	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252440)	promoter-TSS (NM_001252440)	-670.0	NM_025967	67102.0	Mm.37332	NM_025967	ENSMUSG00000022864	D16Ertd472e	1700010I10Rik|2310009O17Rik|E330003K22Rik|Eurl	DNA segment, Chr 16, ERATO Doi 472, expressed	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124476342-2	chr6	124476242	124476442	+	698.400024	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11A|LTR|ERVK	-11558.0	NM_153508	232370.0	Mm.193701	NM_153508	ENSMUSG00000008153	Clstn3	CSTN3|Cs3|Cst-3|alc-beta	calsyntenin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-63378140-2	chr10	63378040	63378240	+	822.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4303.0	NM_001253685	30045.0	Mm.32550	NM_013888	ENSMUSG00000036764	Dnajc12	Jdp1|mJDP1	DnaJ heat shock protein family (Hsp40) member C12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-128629329-2	chr3	128629228	128629428	+	668.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1C|Other|Other	-397723.0	NR_045704	402774.0	Mm.209170	NR_045704	ENSMUSG00000105816	D030025E07Rik	-	RIKEN cDNA D030025E07 gene	ncRNA	-0.53685670283103	-0.0461656216934105	-0.529662575686358	-0.532372663416457	-0.394489979460782	-0.525344448454483	-0.0779569092995608	-0.531899702248305	0.226200477760833	0.931666465238598	1
Merged-chr10-61683065-2	chr10	61682965	61683165	+	732.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358488, intron 2 of 7)	intron (NM_001358488, intron 2 of 7)	-2775.0	NR_126477	75539.0		NR_126477		1700022H01Rik	-	RIKEN cDNA 1700022H01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-54690557-2	chr13	54690457	54690657	+	955.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_027396, intron 1 of 10)	intron (NR_027396, intron 1 of 10)	-2357.0	NM_001146027	105239.0	Mm.25366	NM_134064	ENSMUSG00000034928	Rnf44	AI854545|mKIAA1100	ring finger protein 44	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-27167952-4	chr7	27167934	27168134	+	615.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_029391)	TTS (NM_029391)	-1232.0	NM_053208	112406.0	Mm.29978	NM_053208	ENSMUSG00000058709	Egln2	0610011A13Rik|C85656|Hif-p4h-1|Ier4|Phd1|SM-20	egl-9 family hypoxia-inducible factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-98272707-3	chr12	98272619	98272819	+	807.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008152, intron 1 of 1)	L1ME3A|LINE|L1	4084.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-18874067-2	chr2	18873967	18874167	+	865.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355147, intron 3 of 8)	intron (NM_001355147, intron 3 of 8)	-72249.0	NR_131254	66774.0	Mm.87075	NR_131254	ENSMUSG00000097638	Carlr	4933439G12Rik|Carl	cardiac and apoptosis-related long non-coding RNA	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-78194901-4	chr11	78194798	78194998	+	895.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045516, intron 1 of 3)	intron (NM_001045516, intron 1 of 3)	1506.0	NM_001045516	216974.0	Mm.50974	NM_001045516	ENSMUSG00000044122	Proca1	4933404M19Rik	protein interacting with cyclin A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-92875180-4	chr7	92875077	92875277	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028243)	promoter-TSS (NM_028243)	-76.0	NM_028243	72461.0	Mm.389969	NM_028243	ENSMUSG00000061119	Prcp	2510048K03Rik|2610104A14Rik|AI451719|HUMPCP|PCP	prolylcarboxypeptidase (angiotensinase C)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-62479947-4	chr4	62479845	62480045	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138653)	promoter-TSS (NM_138653)	-122.0	NM_138653	192120.0	Mm.29808	NM_138653	ENSMUSG00000028392	Bspry	-	B-box and SPRY domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-129331976-4	chr7	129331869	129332069	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080963, intron 5 of 6)	intron (NM_001080963, intron 5 of 6)	74875.0	NM_001080963	381925.0	Mm.39184	NM_001080963	ENSMUSG00000070366	Plpp4	C030048B12Rik|Gm1090|Ppapdc1a	phospholipid phosphatase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-9911464-6	chr19	9911361	9911561	+	860.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11928.0	NM_016692	16319.0	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-32297440-4	chr3	32297342	32297542	+	960.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68047.0	NR_027966	67576.0	Mm.435324	NR_027966		4930429B21Rik	-	RIKEN cDNA 4930429B21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-123923690-4	chr9	123923609	123923809	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	44983.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128488948-2	chr10	128488848	128489048	+	664.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_001114096, exon 29 of 29)	exon (NM_001114096, exon 29 of 29)	4061.0	NM_001317220	17904.0	Mm.337074	NM_010860	ENSMUSG00000090841	Myl6	ESMLC|LC17|LC17-GI|MLC-3|MLC1SM|Myln	myosin, light polypeptide 6, alkali, smooth muscle and non-muscle	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70080084-3	chr11	70080014	70080214	+	639.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-12530.0	NM_007493	11890.0	Mm.1357	NM_007493	ENSMUSG00000040963	Asgr2	ASGPR2|Asgr|Asgr-2|HL-2	asialoglycoprotein receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98588292-4	chr11	98588197	98588397	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1052.0	NM_025661	66612.0	Mm.180546	NM_025661	ENSMUSG00000038150	Ormdl3	2810011N17Rik|AI315223	ORM1-like 3 (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-55209656-2	chr13	55209556	55209756	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008739)	promoter-TSS (NM_008739)	-126.0	NM_008739	18193.0	Mm.168965	NM_008739	ENSMUSG00000021488	Nsd1	AI528500|KMT3B	nuclear receptor-binding SET-domain protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-105702772-2	chr4	105702672	105702872	+	587.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-538441.0	NR_151521	105244641.0	Mm.404914	NR_151521		Gm12724	-	predicted gene 12724	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101179519-2	chr11	101179419	101179619	+	989.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_016782, exon 7 of 24)	exon (NM_016782, exon 7 of 24)	3402.0	NM_016782	53321.0	Mm.474527	NM_016782	ENSMUSG00000017167	Cntnap1	AI841080|Caspr|NCP1|Nrxn4|p190|shm	contactin associated protein-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-110561194-4	chr13	110561139	110561339	+	941.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	166195.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-138993954-2	chr5	138993854	138994054	+	701.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008808, intron 1 of 5)	CpG-11694	999.0	NM_008808	18590.0	Mm.2675	NM_008808	ENSMUSG00000025856	Pdgfa	-	platelet derived growth factor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-4325791-4	chr18	4325689	4325889	+	948.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27164.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-113172756-2	chr6	113172656	113172856	+	670.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177763, intron 3 of 3)	intron (NM_177763, intron 3 of 3)	22628.0	NM_177763	269788.0	Mm.37943	NM_177763	ENSMUSG00000042873	Lhfpl4	1190004M23Rik|AI604880|B230384L07|mKIAA4027	lipoma HMGIC fusion partner-like protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-86732070-2	chr10	86731970	86732170	+	959.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_153595)	TTS (NM_153595)	19305.0	NM_153595	103220.0	Mm.440762	NM_153595	ENSMUSG00000044937	Ttc41	AI449705|AU041509|Gnn	tetratricopeptide repeat domain 41	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-33467268-1	chr4	33467168	33467368	+	606.0	f0_balb.idr	intron (NM_001305273, intron 14 of 15)	intron (NM_001305273, intron 14 of 15)	29187.0	NR_106198	102465904.0		NR_106198	ENSMUSG00000098310	Mir8118	Gm27954|mmu-mir-8118	microRNA 8118	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-143231063-4	chr6	143230975	143231175	+	850.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-14813.0	NR_027803	52285.0	Mm.354898	NM_001033129		D6Ertd474e	1700001I24Rik|AU023129	DNA segment, Chr 6, ERATO Doi 474, expressed	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-75439779-2	chr10	75439679	75439879	+	856.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_133995, intron 9 of 9)	(TTG)n|Simple_repeat|Simple_repeat	-9731.0	NR_045841	71125.0	Mm.399516	NR_045841		4933407G14Rik	-	RIKEN cDNA 4933407G14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-83836828-2	chr3	83836728	83836928	+	589.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_011905, exon 3 of 3)	exon (NM_011905, exon 3 of 3)	4780.0	NM_011905	24088.0	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-40832220-3	chr9	40832105	40832305	+	847.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	30932.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	3.29281746146082	3.21077856441476	3.23468586015732	2.36619775486399	1.82926111812459	1.87384642922389	1.26964317317177	1.22893763602077	-3.43867905715306	0.000288444616147809	0.00715032748872192
Merged-chr8-70813423-2	chr8	70813323	70813523	+	567.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008353, intron 6 of 15)	intron (NM_008353, intron 6 of 15)	4974.0	NM_008353	16161.0	Mm.731	NM_008353	ENSMUSG00000000791	Il12rb1	CD212|IL-12R[b]	interleukin 12 receptor, beta 1	protein-coding	1.52356420425722	2.66617900209025	0.992410575193371	0.967983668004316	2.1237775999552	1.75404808255932	2.73395084360263	0.972323621204341	0.677020764354571	0.584529502502534	0.967268722441911
Merged-chr8-10835279-4	chr8	10835223	10835423	+	952.033325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47131.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-66383546-4	chr9	66383442	66383642	+	987.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145617, intron 3 of 77)	T-rich|Low_complexity|Low_complexity	33092.0	NM_145617	235439.0	Mm.244179	NM_145617	ENSMUSG00000038664	Herc1	2810449H11Rik|B230218H07|D130015N03Rik|tbl	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-103758703-4	chr5	103758615	103758815	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080798, intron 1 of 19)	AT_rich|Low_complexity|Low_complexity	4142.0	NM_001080798	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-33630250-1	chr5	33630150	33630350	+	630.0	f0_balb.idr	promoter-TSS (NM_178390)	promoter-TSS (NM_178390)	-615.0	NM_001359463	74504.0	Mm.294695	NM_178390	ENSMUSG00000037339	Fam53a	2410018C17Rik|5430419M09Rik|Dntnp	family with sequence similarity 53, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167060513-4	chr2	167060412	167060612	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033196, intron 1 of 13)	intron (NM_001033196, intron 1 of 13)	-2422.0	NR_138563	68949.0	Mm.391959	NM_001081005		Zfas1	1500012F01Rik|Zfos1	zinc finger, NFX1-type containing 1, antisense RNA 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71337720-4	chr17	71337603	71337803	+	780.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028023, intron 2 of 2)	MTC|LTR|ERVL-MaLR	4101.0	NR_028023	100043644.0	Mm.362377	NR_028023		Gm4566	-	ubiquitin specific peptidase 16 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-123322293-3	chr3	123322184	123322384	+	868.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027135, intron 8 of 22)	intron (NM_027135, intron 8 of 22)	54788.0	NM_027135	69608.0	Mm.29293	NM_027135	ENSMUSG00000039234	Sec24d	2310020L09Rik|Gm1349	Sec24 related gene family, member D (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10895177-4	chr19	10895081	10895281	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253843)	promoter-TSS (NM_001253843)	-50.0	NM_134129	28000.0	Mm.491104	NM_134129	ENSMUSG00000024735	Prpf19	AA617263|AL024362|D19Wsu55e|NMP200|PSO4|Prp19|Snev	pre-mRNA processing factor 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-87413455-4	chr12	87413364	87413564	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24293.0	NR_037228	100526546.0		NR_037228	ENSMUSG00000105428	Mir3068	mir-3068|mmu-mir-3068	microRNA 3068	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-68738738-2	chr10	68738638	68738838	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177794, intron 1 of 5)	MTA_Mm|LTR|ERVL-MaLR	14992.0	NM_177794	327766.0	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-47374609-3	chr19	47374529	47374729	+	908.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008018, intron 3 of 14)	MLT1K|LTR|ERVL-MaLR	89782.0	NM_001164717	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19326564-4	chr7	19326456	19326656	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16511.0	NM_001347586	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-110446496-4	chr12	110446341	110446541	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001135001)	promoter-TSS (NM_001135001)	-738.0	NM_001135001	26931.0	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-155147442-4	chr1	155147358	155147558	+	999.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355062)	promoter-TSS (NM_001355062)	-644.0	NM_008209	15064.0	Mm.7580	NM_008209	ENSMUSG00000026471	Mr1	H2ls	major histocompatibility complex, class I-related	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-27688321-4	chr15	27688264	27688464	+	957.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6822.0	NM_001242423	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-37478824-2	chr1	37478724	37478924	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173870, intron 5 of 15)	intron (NM_173870, intron 5 of 15)	9781.0	NR_024017	77633.0	Mm.483177	NR_024017	ENSMUSG00000103948	4930594C11Rik	-	G1 to S phase transition pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-20076834-4	chr3	20076754	20076954	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355097, intron 10 of 25)	B2_Mm2|SINE|B2	18563.0	NR_105047	20585.0	Mm.209650	NM_009210	ENSMUSG00000002428	Hltf	AF010600|BC057116|P113|Smarca3|Snf2l3	helicase-like transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-80637330-4	chr1	80637220	80637420	+	926.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175291, intron 2 of 55)	intron (NM_175291, intron 2 of 55)	28032.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117797987-2	chr11	117797887	117798087	+	727.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029964, intron 1 of 5)	intron (NM_029964, intron 1 of 5)	327.0	NM_029964	77727.0	Mm.159981	NM_029964	ENSMUSG00000025573	6030468B19Rik	Il-40	RIKEN cDNA 6030468B19 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-114687178-2	chr5	114687078	114687278	+	544.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019821, intron 1 of 4)	intron (NM_019821, intron 1 of 4)	3757.0	NM_019821	56356.0	Mm.275766	NM_019821	ENSMUSG00000011884	Gltp	1110001F24Rik|C76925|C77564	glycolipid transfer protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-73939161-3	chr17	73939053	73939253	+	961.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011723, intron 4 of 35)	MTE2b|LTR|ERVL-MaLR	11043.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-54531623-2	chr8	54531518	54531718	+	588.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR11A|LTR|ERVK	-1620.0	NM_029701	76687.0	Mm.86437	NM_029701	ENSMUSG00000054408	Spcs3	1810011E08Rik|SPC22/23	signal peptidase complex subunit 3 homolog (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-45285541-1	chr4	45285441	45285641	+	719.666687	f0_balb.idr	exon (NM_001081172, exon 16 of 16)	exon (NM_001081172, exon 16 of 16)	-11627.0	NM_027266	69934.0	Mm.46761	NM_027266	ENSMUSG00000035601	Trmt10b	2610042J10Rik|Rg9mtd3|Rnmtd3	tRNA methyltransferase 10B	protein-coding	1.07207207176874	0.65887561769744	0.646161032917018	0.636214048881775	1.5564866796976	1.61404543148606	0.648982266982125	1.48528802308755	2.91609360798513	0.0734044270952984	0.409647915188285
Merged-chr16-90220613-4	chr16	90220505	90220705	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011434)	promoter-TSS (NM_011434)	-137.0	NM_011434	20655.0	Mm.276325	NM_011434	ENSMUSG00000022982	Sod1	B430204E11Rik|Cu/Zn-SOD|CuZnSOD|Ipo-1|Ipo1|SODC|Sod-1	superoxide dismutase 1, soluble	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-25840958-2	chr18	25840858	25841058	+	746.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-86801.0	NM_001362334	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-115091437-2	chr13	115091337	115091537	+	966.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033228, intron 1 of 28)	intron (NM_001033228, intron 1 of 28)	-1279.0	NM_134058	105083.0	Mm.486295	NM_134058	ENSMUSG00000042275	Pelo	AA409897|AI852218	pelota mRNA surveillance and ribosome rescue factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-42146424-4	chr19	42146320	42146520	+	960.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183195)	promoter-TSS (NM_183195)	-969.0	NM_183195	277010.0	Mm.206250	NM_183195	ENSMUSG00000044345	Marveld1	AI504298|Mrvldc1	MARVEL (membrane-associating) domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-19916617-2	chr14	19916517	19916717	+	609.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285910, intron 1 of 2)	MLTR18D_MM|LTR|ERVK	60076.0	NM_001285911	14702.0	Mm.41737	NM_010315	ENSMUSG00000043004	Gng2	-	guanine nucleotide binding protein (G protein), gamma 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-93471397-4	chr2	93471318	93471518	+	987.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8468.0	NM_001136055	12521.0	Mm.4261	NM_007656	ENSMUSG00000027215	Cd82	AA682076|AL023070|C33|IA4|Kai1|Tspan27	CD82 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-52056852-3	chr16	52056717	52056917	+	683.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033238, intron 3 of 17)	intron (NM_001033238, intron 3 of 17)	25268.0	NM_001033238	208650.0	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-62606449-2	chr11	62606349	62606549	+	964.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357955, intron 3 of 3)	intron (NM_001357955, intron 3 of 3)	1919.0	NR_028541	100217444.0		NR_028541		Snord65	MBII-135|snoRNA135	small nucleolar RNA, C/D box 65	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19301773-9	chr7	19301667	19301867	+	971.050903	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008036)	TTS (NM_008036)	8278.0	NM_008036	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118478488-2	chr11	118478388	118478588	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153103, intron 1 of 13)	intron (NR_153103, intron 1 of 13)	1656.0	NM_001359368	217364.0	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-20297008-4	chr8	20296933	20297133	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030708, intron 1 of 4)	CpG	399.0	NR_030708	547150.0	Mm.359054	NR_030708	ENSMUSG00000071796	6820431F20Rik	-	cadherin 11 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-94361382-3	chr9	94361301	94361501	+	798.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	176680.0	NM_001033145	68861.0	Mm.258746	NM_001033145	ENSMUSG00000045414	1190002N15Rik	GoPro49|HASF	RIKEN cDNA 1190002N15 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-87638437-2	chr4	87638337	87638537	+	630.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	167886.0	NM_001286158	70122.0	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83508377-2	chr6	83508277	83508477	+	770.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1408.0	NM_001162521	27369.0	Mm.42234	NM_013764	ENSMUSG00000014554	Dguok	dGK|dGK1|dGK2|dGK3	deoxyguanosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-61485887-1	chr18	61485787	61485987	+	725.0	f1_balb.idr	Intergenic	L2b|LINE|L2	-1280.0	NR_045419	442846.0	Mm.417648	NR_045419		A530050N04Rik	-	RIKEN cDNA A530050N04 gene	ncRNA	-1.50874880059862	-1.47511716453926	-1.4852876488768	-1.49364198752927	-1.50638792193216	-0.992828729615453	-1.48298527415345	-1.4921465649048	2.3185461113984	0.50391666537493	1
Merged-chr18-34080614-3	chr18	34080529	34080729	+	753.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-73423.0	NM_013512	13824.0	Mm.3465	NM_013512	ENSMUSG00000024376	Epb41l4a	Epb4.1l4|Epb4.1l4a|NBL4	erythrocyte membrane protein band 4.1 like 4a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119305528-3	chr11	119305438	119305638	+	881.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-5495.0	NM_138669	192170.0	Mm.197555	NM_138669	ENSMUSG00000025580	Eif4a3	2400003O03Rik|Ddx48|eIF4A-III|mKIAA0111	eukaryotic translation initiation factor 4A3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-46011067-4	chr16	46010944	46011144	+	997.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001134480)	promoter-TSS (NM_001134480)	-631.0	NM_001134480	433022.0	Mm.380993	NM_001134480	ENSMUSG00000087141	Plcxd2	AW494639|EG433022	phosphatidylinositol-specific phospholipase C, X domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-21815069-4	chr16	21814956	21815156	+	810.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4c|LINE|L1	20709.0	NR_037957	100043489.0	Mm.326535	NR_037957	ENSMUSG00000097290	1300002E11Rik	1500026P21Rik	RIKEN cDNA 1300002E11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-144110886-4	chr3	144110795	144110995	+	861.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	91437.0	NM_001161770	16911.0	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-120037989-4	chr2	120037897	120038097	+	827.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145378, intron 11 of 19)	intron (NM_145378, intron 11 of 19)	4564.0	NM_145378	211429.0	Mm.41467	NM_145378	ENSMUSG00000098488	Pla2g4b	A030011C02Rik|Gm1013|cPLA2-beta	phospholipase A2, group IVB (cytosolic)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55555677-2	chr19	55555577	55555777	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360431, intron 8 of 8)	intron (NM_001360431, intron 8 of 8)	146527.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-35732215-4	chr2	35732120	35732320	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35488.0	NM_001290639	69601.0	Mm.29629	NM_001001602	ENSMUSG00000026883	Dab2ip	2310011D08Rik|AI480459|Aip1|mKIAA1743	disabled 2 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-36212043-2	chr2	36211943	36212143	+	577.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18383.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-3462224-4	chr5	3462129	3462329	+	878.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 4 of 7)	intron (NM_009873, intron 4 of 7)	-81604.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-157764012-4	chr3	157763914	157764114	+	756.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	161049.0	NM_145953	107869.0	Mm.28301	NM_145953	ENSMUSG00000028179	Cth	0610010I13Rik|AI314617|BC019483|CSE|Cys3	cystathionase (cystathionine gamma-lyase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76509880-2	chr15	76509780	76509980	+	555.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010046, intron 1 of 16)	intron (NM_010046, intron 1 of 16)	2114.0	NM_010046	13350.0	Mm.22633	NM_010046	ENSMUSG00000022555	Dgat1	ARAT|C75990|D15Ertd23e|Dgat	diacylglycerol O-acyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126890837-4	chr8	126890720	126890920	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41800.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99098365-1	chr15	99098265	99098465	+	580.0	f0_balb.idr	Intergenic	CpG	-1119.0	NM_176835	72778.0	Mm.30544	NM_176835	ENSMUSG00000038009	Dnajc22	2810451A06Rik|AI506245	DnaJ heat shock protein family (Hsp40) member C22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-140395963-3	chr2	140395882	140396082	+	974.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028387, intron 1 of 3)	CpG	547.0	NM_028387	72899.0	Mm.229466	NM_028387	ENSMUSG00000068205	Macrod2	1110033L15Rik|2610107G07Rik|2900006F19Rik	MACRO domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-61983537-4	chr15	61983424	61983624	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1817.0	NM_001177354	17869.0	Mm.2444	NM_010849	ENSMUSG00000022346	Myc	AU016757|Myc2|Niard|Nird|bHLHe39	myelocytomatosis oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122315147-3	chr8	122315068	122315268	+	800.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009569, intron 3 of 9)	intron (NM_009569, intron 3 of 9)	33027.0	NM_009569	22761.0	Mm.3105	NM_009569	ENSMUSG00000049577	Zfpm1	FOG|Fog1	zinc finger protein, multitype 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83008799-4	chr6	83008693	83008893	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033079, intron 7 of 9)	intron (NM_033079, intron 7 of 9)	24678.0	NM_010070	13448.0	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	6.09166500444308	5.37289526757799	5.78764209753295	6.59685361265158	5.62169377690124	4.94163762314432	5.56628066668528	6.08052009944422	-0.471832355146401	0.129201827300308	0.562740872682392
Merged-chr12-17712733-8	chr12	17712634	17712834	+	965.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016677, intron 1 of 3)	L1MC5a|LINE|L1	21925.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	-0.0045387304078594	0.0170525307066738	0.0100440423456623	0.698369327008666	-0.0031731044604682	0.237963530210632	0.948902258448247	0.0055491192590939	0.870670297500019	0.69017683551757	1
Merged-chr16-24517831-4	chr16	24517747	24517947	+	944.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 3 of 12)	intron (NM_178665, intron 3 of 12)	-11467.0	NR_038091	624582.0	Mm.439775	NR_038091		Morf4l1-ps1	A730098P11Rik	mortality factor 4 like 1, pseudogene 1	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-105642957-4	chr9	105642847	105643047	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081309)	promoter-TSS (NM_001081309)	-48.0	NM_001081309	75669.0	Mm.274830	NM_029380	ENSMUSG00000032571	Pik3r4	2210010O15Rik|C730038E05Rik|C85833|D9Ertd418e|Vps15|p150	phosphoinositide-3-kinase regulatory subunit 4	protein-coding	5.42122499198964	4.74984224619682	4.79406301078255	5.54502645752286	4.89755419817105	6.03062332752748	5.58709490162982	5.0497735800219	0.316121085490616	0.358865067221749	0.856306289008338
Merged-chr2-77197296-4	chr2	77197193	77197393	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175465, intron 12 of 17)	intron (NM_175465, intron 12 of 17)	-26658.0	NM_001025576	545428.0	Mm.26579	NM_001025576	ENSMUSG00000044033	Ccdc141	2610301F02Rik|CAMDI	coiled-coil domain containing 141	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-140699822-4	chr4	140699687	140699887	+	970.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1686.0	NM_173867	108911.0	Mm.253	NM_173867	ENSMUSG00000040945	Rcc2	2610510H01Rik|2610529N02Rik|AA536646|AA675016|Td60|mKIAA1470	regulator of chromosome condensation 2	protein-coding	3.48085656778688	4.05063941808297	3.42405909590433	3.74334280781376	4.26596180537815	4.272413279141	3.94935644963028	4.23412684001838	0.694371987418631	0.124315502003319	0.552284890040416
Merged-chr18-84318863-2	chr18	84318763	84318963	+	577.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033341, intron 7 of 8)	intron (NM_001033341, intron 7 of 8)	230705.0	NM_146090	225791.0	Mm.147052	NM_146090	ENSMUSG00000049090	Zadh2	C530046K17Rik|PTGR-3|Pthr3	zinc binding alcohol dehydrogenase, domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-136322183-2	chr3	136322083	136322283	+	683.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033350, intron 1 of 16)	intron (NM_001033350, intron 1 of 16)	3883.0	NM_001310749	242248.0	Mm.30832	NM_001033350	ENSMUSG00000037922	Bank1	A530094C12Rik|AI451642|AVIEF|BANK	B cell scaffold protein with ankyrin repeats 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3854704-3	chr12	3854593	3854793	+	819.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007872, intron 3 of 22)	intron (NM_007872, intron 3 of 22)	7551.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-8771028-1	chr10	8770928	8771128	+	648.5	f0_balb.idr	intron (NM_175155, intron 8 of 19)	intron (NM_175155, intron 8 of 19)	115042.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	-1.26571374789235	-1.51209590594483	-1.52146493977932	-1.38174326885381	-1.5409024774237	-1.51006559722904	-1.51934399588257	-1.52778336220656	-1.78996300869195	0.608863169873916	1
Merged-chr10-13980987-2	chr10	13980887	13981087	+	636.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358782, intron 1 of 9)	B3|SINE|B2	14608.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-88592976-2	chr5	88592876	88593076	+	724.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359208, intron 2 of 13)	intron (NM_001359208, intron 2 of 13)	9463.0	NM_001359209	52822.0	Mm.270469	NM_027530	ENSMUSG00000029291	Rufy3	2810428M05Rik|6330416M07Rik|AW455998|AW538594|D5Bwg0860e|Ripx|Rpipx	RUN and FYVE domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-87010771-2	chr6	87010671	87010871	+	850.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_020045, intron 1 of 7)	intron (NM_020045, intron 1 of 7)	935.0	NM_020045	56748.0	Mm.23809	NM_020045	ENSMUSG00000029993	Nfu1	0610006G17Rik|CGI-33|Hirip5	NFU1 iron-sulfur cluster scaffold	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5425312-2	chr17	5425212	5425412	+	599.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_027457, intron 3 of 3)	intron (NM_027457, intron 3 of 3)	-6545.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-75098724-4	chr8	75098812	75099012	+	830.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010442, intron 4 of 4)	intron (NM_010442, intron 4 of 4)	5294.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-41598987-2	chr3	41598887	41599087	+	650.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001130184, intron 6 of 10)	intron (NM_001130184, intron 6 of 10)	34107.0	NM_001130186	269424.0	Mm.286285	NM_172303	ENSMUSG00000025764	Jade1	AU041499|D530048A03Rik|Phf17|mKIAA1807	jade family PHD finger 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81404240-2	chr10	81404140	81404340	+	792.900024	f1_balb.idr|f1_c57bl6.idr	intron (NM_008688, intron 8 of 9)	ZP3AR|Satellite|Satellite	-5335.0	NR_152732	102634174.0	Mm.392213	NR_152732	ENSMUSG00000085327	Gm16104	-	predicted gene 16104	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-22000721-4	chr10	22000558	22000758	+	982.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001161850)	TTS (NM_001161850)	5992.0	NM_011361	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-64551970-2	chr2	64551870	64552070	+	649.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-453932.0	NM_001267847	60344.0	Mm.130769	NM_021716	ENSMUSG00000075324	Fign	fi|fidget	fidgetin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85973733-4	chr12	85973621	85973821	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347395, intron 29 of 32)	intron (NM_001347395, intron 29 of 32)	105320.0	NM_009368	21809.0	Mm.3992	NM_009368	ENSMUSG00000021253	Tgfb3	TGF-beta-3|Tgfb-3	transforming growth factor, beta 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-98817443-4	chr13	98817333	98817533	+	915.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-1984.0	NM_172591	218503.0	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	4.66753971372657	3.74329019230722	4.43766655051647	4.41867043570044	4.70134995014418	3.77175580738216	4.46975313205035	4.43959340011204	0.0377993433933843	0.927985523638106	0.998431161219273
Merged-chr5-139720612-2	chr5	139720512	139720712	+	799.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_174850, intron 2 of 16)	intron (NM_174850, intron 2 of 16)	15721.0	NM_174850	231830.0	Mm.240510	NM_174850	ENSMUSG00000036718	Micall2	A930021H16Rik|JRAB|MICAL-L2|mFLJ00139	MICAL-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-102469218-2	chr15	102469118	102469318	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1414.0	NM_011042	18521.0	Mm.236513	NM_011042	ENSMUSG00000056851	Pcbp2	AW412548|Hnrpx|alphaCP-2	poly(rC) binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32083321-3	chr2	32083211	32083411	+	917.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_151493, exon 2 of 6)	non-coding (NR_151493, exon 2 of 6)	394.0	NM_175511	241303.0	Mm.250441	NM_175511	ENSMUSG00000050592	Fam78a	A130092J06Rik	family with sequence similarity 78, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-88295240-2	chr8	88295140	88295340	+	963.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037724, intron 2 of 27)	intron (NM_001037724, intron 2 of 27)	1036.0	NM_001037724	11513.0	Mm.288206	NM_007406	ENSMUSG00000031659	Adcy7	AA407758	adenylate cyclase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-115616155-4	chr7	115616056	115616256	+	837.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025559, intron 7 of 15)	intron (NM_001025559, intron 7 of 15)	185453.0	NM_001277328	20679.0	Mm.323365	NM_011445	ENSMUSG00000051910	Sox6	AI987981|SOX-LZ	SRY (sex determining region Y)-box 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-126607705-4	chr2	126607594	126607794	+	987.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008230, intron 2 of 11)	intron (NM_008230, intron 2 of 11)	10984.0	NM_008230	15186.0	Mm.18603	NM_008230	ENSMUSG00000027360	Hdc	AW108189|Hdc-a|Hdc-c|Hdc-e|Hdc-s	histidine decarboxylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-63861453-2	chr8	63861353	63861553	+	868.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	90717.0	NM_001195687	244495.0	Mm.485331	NM_001195687	ENSMUSG00000094443	Sgo2b	EG244495|Gm4975|Sgol2b	shugoshin 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-109341748-4	chr3	109341646	109341846	+	990.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020505, intron 1 of 26)	intron (NM_020505, intron 1 of 26)	1063.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-24717193-1	chr12	24717093	24717293	+	643.0	f1_c57bl6.idr	Intergenic	Intergenic	8939.0	NM_009104	20135.0	Mm.99	NM_009104	ENSMUSG00000020649	Rrm2	AA407299|R2	ribonucleotide reductase M2	protein-coding	0.321989407434344	0.362289597833526	0.34943869508744	1.58603390138341	0.830363253159581	1.49744901144937	0.352300777642369	0.34108400504097	0.208826680505533	0.948370805415351	0.998431161219273
Merged-chr4-141873860-3	chr4	141873782	141873982	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025994, intron 1 of 3)	intron (NM_025994, intron 1 of 3)	1038.0	NM_025994	27984.0	Mm.395598	NM_025994	ENSMUSG00000040659	Efhd2	2600015J22Rik|AA408606|D4Wsu27e	EF hand domain containing 2	protein-coding	3.0929869538371	4.67944847288944	3.64373804512259	3.45683056870366	3.21451314508591	4.33474870416364	3.75199680308696	3.84716567033697	-0.0222622683526829	0.967777694936182	0.998431161219273
Merged-chr14-63126632-2	chr14	63126532	63126732	+	938.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_007798, intron 1 of 9)	intron (NM_007798, intron 1 of 9)	4170.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166776453-2	chr2	166776353	166776553	+	546.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17314.0	NM_023815	76367.0	Mm.330796	NM_023815	ENSMUSG00000042854	Trp53rkb	2810408M09Rik|4933401B08Rik|5630401H01Rik|Nori-2|PRPK|Tp53rk|Trp53rk|Trp53tk|mNori-2p	transformation related protein 53 regulating kinase B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120510404-2	chr11	120510304	120510504	+	853.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18567.0	NM_013770	27376.0	Mm.3991	NM_013770	ENSMUSG00000025792	Slc25a10	Dic	solute carrier family 25 (mitochondrial carrier, dicarboxylate transporter), member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-47743598-2	chr8	47743498	47743698	+	696.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29667.0	NM_172407	70925.0	Mm.393807	NM_172407	ENSMUSG00000038069	Cdkn2aip	4921511I16Rik|AW208986|CARF	CDKN2A interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-113749852-2	chr11	113749752	113749952	+	744.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163346, intron 1 of 1)	intron (NM_001163346, intron 1 of 1)	1308.0	NM_020006	56699.0	Mm.293378	NM_020006	ENSMUSG00000041598	Cdc42ep4	1500041M20Rik|Borg4|CEP4	CDC42 effector protein (Rho GTPase binding) 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-47361936-7	chr14	47361791	47361991	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-11969.0	NM_010705	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	6.01033659875524	5.72912319271077	5.79850225772898	5.72830936995683	4.10461252780697	4.11349586603765	3.79171354264548	3.46267807111071	-2.31077319907118	3.54115154173366e-12	1.04475580814067e-09
Merged-chr8-72176882-2	chr8	72176782	72176982	+	742.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023126, intron 6 of 7)	intron (NM_023126, intron 6 of 7)	-12786.0	NM_197944	209488.0	Mm.157431	NM_197944	ENSMUSG00000062007	Hsh2d	ALX|Hsh2	hematopoietic SH2 domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-95714472-2	chr8	95714372	95714572	+	631.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001195006, exon 15 of 15)	3' UTR (NM_001195006, exon 15 of 15)	-1441.0	NM_001035123	66083.0	Mm.261321	NM_001035123	ENSMUSG00000031671	Setd6	0610039J04Rik|3110004G14Rik|AI413388|C76402	SET domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-27461269-4	chr3	27461167	27461367	+	990.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356953, intron 18 of 26)	intron (NM_001356953, intron 18 of 26)	89916.0	NM_177330	208188.0	Mm.194721	NM_177330	ENSMUSG00000051136	Ghsr	C530020I22Rik|GHRP|GHS-R|Ghsr1a	growth hormone secretagogue receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-84570632-3	chr3	84570542	84570742	+	729.277771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293801, intron 1 of 7)	intron (NM_001293801, intron 1 of 7)	11983.0	NM_001293801	99889.0	Mm.316536	NM_001081093	ENSMUSG00000074513	Arfip1	2310030I10Rik|Arfaptin|D3Ertd598e	ADP-ribosylation factor interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-50535148-2	chr17	50535048	50535248	+	808.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013880, intron 1 of 5)	Lx7|LINE|L1	25601.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-79533903-3	chr14	79533787	79533987	+	799.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286411, intron 1 of 8)	intron (NM_001286411, intron 1 of 8)	18213.0	NM_001286411	13709.0	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120737453-4	chr8	120737372	120737572	+	979.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008320, intron 1 of 8)	intron (NM_008320, intron 1 of 8)	1114.0	NM_008320	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-34033260-2	chr3	34033160	34033360	+	665.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113189, intron 1 of 16)	RSINE1|SINE|B4	13181.0	NM_001113189	14359.0	Mm.259021	NM_008053	ENSMUSG00000027680	Fxr1	1110050J02Rik|9530073J07Rik|AI851072|Fxr1h|Fxr1p	fragile X mental retardation gene 1, autosomal homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-6065249-3	chr15	6065165	6065365	+	705.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20561.0	NR_155429	105245876.0	Mm.128197	NR_155428		Gm41259	-	predicted gene, 41259	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141963374-4	chr4	141963264	141963464	+	815.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177868, intron 9 of 31)	intron (NM_177868, intron 9 of 31)	-19628.0	NR_040672	545691.0	Mm.332015	NR_040672	ENSMUSG00000085424	Fhad1os1	Gm13037	forkhead-associated (FHA) phosphopeptide binding domain 1, opposite strand 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-10394914-7	chr17	10394820	10395020	+	924.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61296.0	NR_077239	319750.0	Mm.383485	NR_077237	ENSMUSG00000089633	A230009B12Rik	-	RIKEN cDNA A230009B12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-26466846-2	chr12	26466804	26467004	+	754.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2311.0	NM_020557	22169.0	Mm.271839	NM_020557	ENSMUSG00000020638	Cmpk2	1200004E04Rik|TDKI|Tyki	cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36861833-2	chr1	36861733	36861933	+	939.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_018872, intron 4 of 40)	intron (NM_018872, intron 4 of 40)	77694.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-152178077-4	chr4	152177968	152178168	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133348)	promoter-TSS (NM_133348)	-32.0	NM_133348	70025.0	Mm.296191	NM_133348	ENSMUSG00000028937	Acot7	2410041A17Rik|Ach1|Act|Bach|CTE-IIa|Cte-II|Lach1	acyl-CoA thioesterase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-48102363-2	chr4	48102263	48102463	+	666.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	-22556.0	NM_026343	67727.0	Mm.171334	NM_026343	ENSMUSG00000061455	Stx17	4833418L03Rik|6330411F21Rik|9030425C21Rik|AW048351	syntaxin 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-90297434-2	chr16	90297334	90297534	+	734.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-12931.0	NM_178923	224432.0	Mm.439811	NM_178923	ENSMUSG00000022983	Scaf4	AA517739|Sfrs15|Sra4|Srsf15	SR-related CTD-associated factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118424162-2	chr11	118424062	118424262	+	636.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4295.0	NM_001204129	56745.0	Mm.23845	NM_019959	ENSMUSG00000017446	C1qtnf1	1600017K21Rik|CTRP1|Zsig37	C1q and tumor necrosis factor related protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-59725746-4	chr9	59725642	59725842	+	937.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17978.0	NM_001033498	546134.0	Mm.297580	NM_001033498	ENSMUSG00000074259	Gramd2	BC064463|Gramd2a	GRAM domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191999287-2	chr1	191999187	191999387	+	796.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_039566)	promoter-TSS (NR_039566)	-653.0	NR_039566	100628582.0		NR_039566	ENSMUSG00000093003	Mir3473c	mmu-mir-3473c	microRNA 3473c	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-100615736-3	chr5	100615641	100615841	+	838.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43536.0	NM_139198	231507.0	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	0.87355793049707	0.517066296972132	0.509067766778847	0.810580689115898	1.2303676896157	0.717219255012154	0.693298083698995	1.0488770246619	1.43268839844782	0.365716946952993	1
Merged-chr6-87248622-1	chr6	87248522	87248722	+	658.0	f0_balb.idr	intron (NM_054041, intron 10 of 17)	intron (NM_054041, intron 10 of 17)	87153.0	NM_054041	69538.0	Mm.232525	NM_054041	ENSMUSG00000033420	Antxr1	2310008J16Rik|2810405N18Rik|Antrx1|Tem8	anthrax toxin receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-92038216-4	chr13	92038145	92038345	+	852.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50203.0	NM_009027	19418.0	Mm.248630	NM_009027	ENSMUSG00000021708	Rasgrf2	6330417G04Rik|AW048350|Grf2|Ras-GRF2	RAS protein-specific guanine nucleotide-releasing factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89378695-6	chr3	89378644	89378844	+	980.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001355206, exon 4 of 4)	3' UTR (NM_001355206, exon 4 of 4)	8927.0	NM_001355212	22724.0	Mm.262184	NM_009565	ENSMUSG00000028042	Zbtb7b	Thpok|Zfp67|c-Krox	zinc finger and BTB domain containing 7B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-8888486-4	chr4	8888403	8888603	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	137179.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-13217046-2	chr17	13216946	13217146	+	551.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4142.0	NM_013741	27263.0	Mm.371809	NM_013741	ENSMUSG00000073458	Smok2a	Smok2	sperm motility kinase 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-44470548-4	chr10	44470429	44470629	+	804.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11781.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-74028458-2	chr15	74028358	74028558	+	675.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-188787.0	NM_001033365	268816.0	Mm.440635	NM_001033365	ENSMUSG00000072487	Mroh5	Gm628	maestro heat-like repeat family member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-24608287-4	chr7	24608195	24608395	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023154, intron 6 of 7)	intron (NM_023154, intron 6 of 7)	-3033.0	NM_001102613	232970.0	Mm.333663	NM_001102613	ENSMUSG00000074277	Phldb3	EG232970|Gm10102	pleckstrin homology like domain, family B, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-69584914-2	chr8	69584840	69585040	+	717.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	40235.0	NM_001045553	234362.0	Mm.458487	NM_172754	ENSMUSG00000060427	Zfp868	AI449175|AW108241|C530032E20|mszf62	zinc finger protein 868	protein-coding	3.02746275077839	3.41104123323421	4.24069052193805	2.30984909964338	1.33335113465132	2.50187243227999	3.39810763168201	2.14863394942177	-1.45781312831257	0.0736547802066057	0.410199987072827
Merged-chr8-120187951-2	chr8	120187851	120188051	+	579.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10482.0	NM_001033980	436062.0	Mm.334852	NM_001033980	ENSMUSG00000042269	Fam92b	1700120B06Rik	family with sequence similarity 92, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-63255829-4	chr13	63255673	63255873	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289926, intron 13 of 15)	intron (NM_001289926, intron 13 of 15)	15744.0	NR_110521	72061.0	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102420602-2	chr12	102420502	102420702	+	719.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011175, intron 2 of 13)	intron (NM_011175, intron 2 of 13)	19211.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-50211744-4	chr11	50211631	50211831	+	977.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011018)	promoter-TSS (NM_011018)	-911.0	NM_011018	18412.0	Mm.40828	NM_011018	ENSMUSG00000015837	Sqstm1	A170|OSF-6|Osi|STAP|STONE14|p62	sequestosome 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-61554316-2	chr14	61554216	61554416	+	843.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310603, intron 1 of 3)	MTD|LTR|ERVL-MaLR	2570.0	NM_025697	66674.0	Mm.282706	NM_025697	ENSMUSG00000021930	Spryd7	6330409N04Rik|Clld6	SPRY domain containing 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-28159111-4	chr15	28158991	28159191	+	991.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44675.0	NM_133365	110082.0	Mm.248464	NM_133365	ENSMUSG00000022262	Dnah5	AU022615|Dnahc5|Mdnah5|b2b1134Clo|b2b1154Clo|b2b1537Clo|b2b1565Clo|b2b3491Clo|b2b601Clo|mKIAA1603	dynein, axonemal, heavy chain 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-59165873-4	chr11	59165787	59165987	+	999.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2142.0	NM_173785	216792.0	Mm.266175	NM_173785	ENSMUSG00000049287	Iba57	4930543L23Rik|A230051G13Rik|C1orf69	IBA57 homolog, iron-sulfur cluster assembly	protein-coding	1.85055112755074	2.18835203952278	2.11659040954713	1.94253992326793	1.97434374034567	2.20416152986176	2.13266066968476	1.49082900778317	-0.135855193819706	0.884395059853231	0.998431161219273
Merged-chr5-137510694-3	chr5	137510591	137510791	+	868.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-8189.0	NM_031408	57330.0	Mm.268344	NM_031408	ENSMUSG00000029714	Gigyf1	Perq1|mKIAA4110	GRB10 interacting GYF protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101135392-2	chr15	101135334	101135534	+	801.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001277259, exon 5 of 12)	exon (NM_001277259, exon 5 of 12)	6912.0	NM_001277257	11482.0	Mm.279542	NM_009612	ENSMUSG00000000530	Acvrl1	AI115505|AI427544|Acvrlk1|Alk1	activin A receptor, type II-like 1	protein-coding	1.99305291604958	1.38119631461789	1.3431798509047	2.46734547528143	2.76550908385493	2.65296708019355	2.92459510863337	2.75527288824108	1.97068337241308	0.0289349341492249	0.231132716326498
Merged-chr17-5574082-2	chr17	5573982	5574182	+	835.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	(TTTTG)n|Simple_repeat|Simple_repeat	81482.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-149343953-4	chr6	149343831	149344031	+	979.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34517.0	NM_001289662	67246.0	Mm.333515	NM_026054	ENSMUSG00000032712	2810474O19Rik	6720435I21Rik|AA536804|AU020969|GET|Kiaa1551	RIKEN cDNA 2810474O19 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-172437125-2	chr2	172437025	172437225	+	772.142822	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3453.0	NM_025542	66404.0	Mm.25157	NM_025542	ENSMUSG00000027502	Rtf2	1700067C04Rik|2410001C21Rik|5730427M17Rik|AA589417|Rtfdc1	replication termination factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56938349-1	chr17	56938249	56938449	+	540.0	f1_balb.idr	Intergenic	Intergenic	-2961.0	NM_022328	64144.0	Mm.148748	NM_022328	ENSMUSG00000024212	Mllt1	AA407901|BAM11|ENL|LTG19	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28376516-4	chr7	28376398	28376598	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011756)	TTS (NM_011756)	2730.0	NM_011756	22695.0	Mm.389856	NM_011756	ENSMUSG00000044786	Zfp36	Gos24|Nup475|TIS11D|TISII|Tis11|Ttp|Zfp-36	zinc finger protein 36	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-9073405-2	chr5	9073305	9073505	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27332.0	NM_001081029	652925.0	Mm.439954	NM_001081029	ENSMUSG00000079659	Tmem243	4930420K17Rik|E030031F02Rik	transmembrane protein 243, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-34946795-2	chr6	34946695	34946895	+	619.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025573, intron 7 of 7)	intron (NM_001025573, intron 7 of 7)	25847.0	NM_009292	20899.0	Mm.5171	NM_009292	ENSMUSG00000029848	Stra8	-	stimulated by retinoic acid gene 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-15567295-2	chr17	15567195	15567395	+	716.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3972.0	NM_144809	213389.0	Mm.215162	NM_144809	ENSMUSG00000051977	Prdm9	BC012016|Dsbc1|G1-419-29|Meisetz|PRDM9-B|Rcr1|repro7	PR domain containing 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-27194519-2	chr3	27194419	27194619	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 1 of 4)	PB1D10|SINE|Alu	11515.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-98350366-2	chr12	98350266	98350466	+	767.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	81731.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-90862120-4	chr5	90862019	90862219	+	878.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29126.0	NM_008176	14825.0	Mm.21013	NM_008176	ENSMUSG00000029380	Cxcl1	Fsp|Gro1|KC|Mgsa|N51|Scyb1|gro	chemokine (C-X-C motif) ligand 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28374284-4	chr7	28374211	28374411	+	959.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1649.0	NM_001083912	101497.0	Mm.235700	NM_138752	ENSMUSG00000037552	Plekhg2	AI194308|Clg|Cslg	pleckstrin homology domain containing, family G (with RhoGef domain) member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-70806107-4	chr6	70806057	70806257	+	883.383301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13982.0	NM_009075	19895.0	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-22453304-4	chr6	22453200	22453400	+	870.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-97219.0	NM_138587	27999.0	Mm.490307	NM_138587	ENSMUSG00000029672	Fam3c	D6Wsu176e|Ilei	family with sequence similarity 3, member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-66469519-3	chr18	66469420	66469620	+	879.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	10916.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36065032-4	chr1	36064937	36065137	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3363.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-49429281-4	chr17	49429175	49429375	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020042, intron 1 of 10)	intron (NM_020042, intron 1 of 10)	911.0	NM_020042	56738.0	Mm.22256	NM_020042	ENSMUSG00000064120	Mocs1	3110045D15Rik|AI043170|AW536397	molybdenum cofactor synthesis 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-156415867-4	chr2	156415764	156415964	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1I|LTR|ERVL-MaLR	-5045.0	NM_001291122	13821.0	Mm.20852	NM_013510	ENSMUSG00000027624	Epb41l1	4.1N|Epb4.1l1|NBL1|mKIAA0338	erythrocyte membrane protein band 4.1 like 1	protein-coding	3.93900423987391	3.6915876776333	3.18523455589276	4.66632650567595	1.83733437819295	3.80015549781141	3.09523048986094	3.83452520692233	-0.925078592543204	0.146446086911748	0.596422318658231
Merged-chr10-68281249-1	chr10	68281149	68281349	+	543.0	f1_balb.idr	Intergenic	Intergenic	-2523.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67229985-2	chr10	67229885	67230085	+	699.666626	f1_balb.idr|f1_c57bl6.idr	exon (NM_001242396, exon 10 of 25)	exon (NM_001242396, exon 10 of 25)	44235.0	NM_001242396	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-100457565-4	chr15	100457457	100457657	+	831.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11454.0	NM_001357983	68614.0	Mm.275272	NM_134093	ENSMUSG00000037353	Letmd1	1110019O13Rik|AI593524|BB130465|BB235638|HCCR-2|HCCR1|MCC-32|Mccr	LETM1 domain containing 1	protein-coding	0.0256244787274528	0.263350378655005	0.0405509309609095	0.0349734357719263	0.903432036909817	0.850313754796048	0.0421381885031007	0.0359506712979683	3.40296978966007	0.11399678364274	1
Merged-chr13-110394975-4	chr13	110394819	110395019	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_152804)	promoter-TSS (NM_152804)	-125.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	2.96294120604304	3.88626026995267	4.88412236841541	3.3344159771939	2.77125540357577	3.02167787633995	4.51468077917396	1.57197027675271	-0.824147339103233	0.475781667248166	0.927406040011522
Merged-chr9-44395209-2	chr9	44395109	44395309	+	813.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2B2|LTR|ERVL	-1718.0	NM_001293631	14385.0	Mm.30087	NM_008063	ENSMUSG00000032114	Slc37a4	100043178|G6PT|G6pt1|GSD-1b|mG6PT	solute carrier family 37 (glucose-6-phosphate transporter), member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-57772621-4	chr14	57772504	57772704	+	953.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M3d|LINE|L1	-25585.0	NM_009119	20220.0	Mm.30173	NM_009119	ENSMUSG00000021963	Sap18	C530046K05Rik|D11Ertd539e|EMegR4|Sap18a|Sinbp1	Sin3-associated polypeptide 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-70790979-2	chr9	70790879	70791079	+	572.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	111997.0	NM_007399	11487.0	Mm.3037	NM_007399	ENSMUSG00000054693	Adam10	1700031C13Rik|MADM|kuz|kuzbanian	a disintegrin and metallopeptidase domain 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-44137718-2	chr16	44137618	44137818	+	619.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_007508, intron 1 of 14)	intron (NM_007508, intron 1 of 14)	1541.0	NM_001358203	11964.0	Mm.217787	NM_007508	ENSMUSG00000052459	Atp6v1a	AI647066|Atp6a1|Atp6a2|Atp6v1a1|VA68|VPP2	ATPase, H+ transporting, lysosomal V1 subunit A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-136432174-2	chr3	136432074	136432274	+	686.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17175.0	NR_040592	70055.0	Mm.261063	NR_040592	ENSMUSG00000099508	1700030L20Rik	-	RIKEN cDNA 1700030L20 gene	ncRNA	-1.5061220274826	-1.47360709383584	-1.48343987814663	-1.49151681994238	-1.50383953926072	-1.47147628845725	-1.0170701920923	-1.49007105122263	2.15652851593596	0.535359572134045	1
Merged-chr6-115813588-2	chr6	115813488	115813688	+	546.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110506, intron 7 of 8)	ORR1E|LTR|ERVL-MaLR	-4845.0	NM_172086	19951.0	Mm.104368	NM_172086	ENSMUSG00000057841	Rpl32	AU020185|rpL32-3A	ribosomal protein L32	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-109491756-2	chr3	109491656	109491856	+	938.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_020505, intron 2 of 26)	intron (NM_020505, intron 2 of 26)	-82251.0	NM_146139	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	1.17234457005282	0.7709825113617	1.52242532637996	1.5691353784395	1.18284617746263	0.773923970192264	1.6395031634878	0.749291823554145	-0.580000367342256	0.68988856943893	0.996533206832645
Merged-chr10-80558503-2	chr10	80558403	80558603	+	681.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025852, intron 1 of 14)	intron (NM_025852, intron 1 of 14)	3057.0	NM_025852	66932.0	Mm.1116	NM_025852	ENSMUSG00000047417	Rexo1	1700021P10Rik|2610511M11Rik|AW050347|EloA-BP1|Rex1|Tceb3bp1	REX1, RNA exonuclease 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117150126-4	chr10	117150072	117150272	+	948.383301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1698.0	NM_177798	327826.0	Mm.135965	NM_177798	ENSMUSG00000020170	Frs2	4732458E18|C330018A15Rik|Frs2alpha|SNT1	fibroblast growth factor receptor substrate 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-77442240-4	chr1	77442168	77442368	+	978.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007936, intron 4 of 17)	intron (NM_007936, intron 4 of 17)	54500.0	NR_105770	102465180.0		NR_105770	ENSMUSG00000099141	Mir6352	Gm27481|mmu-mir-6352	microRNA 6352	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-8588488-2	chr15	8588457	8588657	+	908.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	122250.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117820625-2	chr10	117820525	117820725	+	549.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_024457, intron 4 of 7)	intron (NM_024457, intron 4 of 7)	25349.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-87583829-2	chr11	87583729	87583929	+	869.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361936, intron 2 of 11)	intron (NM_001361936, intron 2 of 11)	2768.0	NM_001284392	18952.0	Mm.2214	NM_011129	ENSMUSG00000020486	Sept4	ARTS|Bh5|Pnutl2	septin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47441534-4	chr17	47441434	47441634	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145489, intron 1 of 4)	MER5A1|DNA|hAT-Charlie	-4159.0	NM_029296	75462.0	Mm.46129	NM_029296	ENSMUSG00000047150	1700001C19Rik	-	RIKEN cDNA 1700001C19 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166654157-4	chr2	166653992	166654192	+	859.223206	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	59740.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91747991-2	chr16	91747891	91748091	+	545.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110276, intron 1 of 15)	intron (NM_001110276, intron 1 of 15)	18620.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91725694-2	chr2	91725594	91725794	+	915.6999509999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4444.0	NM_172669	228361.0	Mm.436667	NM_172669	ENSMUSG00000040506	Ambra1	2310079H06Rik|A130023A14|AA474864|AV021921|D030051N19Rik|mKIAA1736	autophagy/beclin 1 regulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-88551433-2	chr9	88551333	88551533	+	594.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163061, intron 1 of 4)	B3|SINE|B2	3413.0	NM_001142943	71640.0	Mm.259988	NM_001142943	ENSMUSG00000032425	Zfp949	4930422I07Rik|Nczf	zinc finger protein 949	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-111494473-4	chr13	111494355	111494555	+	928.866699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(A)n|Simple_repeat|Simple_repeat	-4328.0	NM_001361924	73274.0	Mm.57286	NM_028487	ENSMUSG00000032745	Gpbp1	1700034P14Rik|AU019836|D230035M11Rik|Gpbp|mGPBP	GC-rich promoter binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-51785101-4	chr17	51784990	51785190	+	957.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357637, intron 6 of 10)	intron (NM_001357637, intron 6 of 10)	26964.0	NM_001163630	20230.0	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134042094-3	chr6	134041997	134042197	+	804.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007961, intron 1 of 7)	intron (NM_007961, intron 1 of 7)	6397.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-8929962-4	chr3	8929856	8930056	+	916.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001025261, exon 8 of 8)	3' UTR (NM_001025261, exon 8 of 8)	-6099.0	NM_025434	66230.0	Mm.38460	NM_025434	ENSMUSG00000040269	Mrps28	1500012D08Rik|AW061224	mitochondrial ribosomal protein S28	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95217290-4	chr3	95217167	95217367	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_108026)	promoter-TSS (NR_108026)	-190.0	NR_108026	100504029.0	Mm.478537	NR_108026	ENSMUSG00000097167	Gm16740	-	predicted gene, 16740	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-55751327-4	chr17	55751213	55751413	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139138, intron 1 of 16)	intron (NM_139138, intron 1 of 16)	1329.0	NM_139138	52614.0	Mm.210497	NM_139138	ENSMUSG00000032915	Adgre4	D17Ertd479e|Egf-tm7|Emr4|Fire|Gpr127	adhesion G protein-coupled receptor E4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-20744404-2	chr18	20744304	20744504	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019737, intron 1 of 8)	(CACAC)n|Simple_repeat|Simple_repeat	2000.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10978902-2	chr19	10978802	10979002	+	828.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001034898, exon 7 of 7)	3' UTR (NM_001034898, exon 7 of 7)	-4232.0	NM_023529	69826.0	Mm.273404	NM_023529	ENSMUSG00000024731	Ms4a10	2010001N17Rik	membrane-spanning 4-domains, subfamily A, member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-21947121-4	chr10	21947025	21947225	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161845, intron 2 of 13)	intron (NM_001161845, intron 2 of 13)	-31547.0	NM_001161847	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-29167430-2	chr7	29167330	29167530	+	676.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_182927, intron 2 of 5)	intron (NM_182927, intron 2 of 5)	1217.0	NM_182927	101809.0	Mm.377262	NM_182927	ENSMUSG00000037239	Spred3	AW047143|D130060H24Rik|Spred-3	sprouty-related, EVH1 domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-91769025-2	chr12	91768925	91769125	+	758.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 1 of 6)	intron (NM_175367, intron 1 of 6)	17411.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120459375-2	chr11	120459268	120459468	+	805.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_152807, intron 2 of 5)	B3A|SINE|B2	1239.0	NM_152807	67291.0	Mm.103384	NM_152807	ENSMUSG00000049957	Ccdc137	3110023B02Rik	coiled-coil domain containing 137	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-76593855-4	chr11	76593774	76593974	+	894.93335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16135.0	NM_198894	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-64876786-4	chr14	64876674	64876874	+	962.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177338, intron 4 of 9)	Lx5c|LINE|L1	73083.0	NM_177338	219150.0	Mm.344074	NM_177338	ENSMUSG00000021972	Hmbox1	AI451877|AI604847|F830020C16Rik	homeobox containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-68258957-4	chr15	68258845	68259045	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145888)	promoter-TSS (NM_001145888)	-89.0	NM_198644	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-147669046-2	chr3	147668946	147669146	+	768.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	816679.0	NM_001302957	70892.0	Mm.187793	NM_027594	ENSMUSG00000036745	Ttll7	1110049N09Rik|4921517B04Rik|C630030B20|mTTLL7	tubulin tyrosine ligase-like family, member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-130547858-3	chr7	130547737	130547937	+	789.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162855)	promoter-TSS (NM_001162855)	-456.0	NM_001162855	67872.0	Mm.21714	NM_001162855	ENSMUSG00000040331	Nsmce4a	2410003A14Rik	NSE4 homolog A, SMC5-SMC6 complex component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-108886850-4	chr8	108886745	108886945	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007496, intron 4 of 9)	intron (NM_007496, intron 4 of 9)	-50015.0	NR_037295	100526511.0		NR_037295	ENSMUSG00000093241	Mir3108	mir-3108|mmu-mir-3108	microRNA 3108	ncRNA	4.06527386687103	3.57036040806077	2.46020097287367	3.1714661769018	3.61918070359671	4.25900805013292	2.812054972183	3.37027625317943	0.24588206503396	0.691097761582642	0.996768576110068
Merged-chr11-54182018-1	chr11	54181918	54182118	+	569.0	f0_balb.idr	intron (NR_045506, intron 2 of 2)	MER3|DNA|hAT-Charlie	31270.0	NR_045506	71056.0	Mm.56332	NR_045506	ENSMUSG00000086209	4933405E24Rik	-	RIKEN cDNA 4933405E24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-78556902-2	chr8	78556802	78557002	+	822.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001009981, intron 4 of 10)	intron (NM_001009981, intron 4 of 10)	47574.0	NM_001282108	76775.0	Mm.334631	NM_029736	ENSMUSG00000031684	Slc10a7	2410193C02Rik|P7	solute carrier family 10 (sodium/bile acid cotransporter family), member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-121762189-2	chr3	121762089	121762289	+	944.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008991, intron 21 of 22)	MER20|DNA|hAT-Charlie	38652.0	NM_010171	14066.0	Mm.273188	NM_010171	ENSMUSG00000028128	F3	AA409063|CD142|Cf-3|Cf3|TF	coagulation factor III	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-17622132-4	chr6	17622042	17622242	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14868.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165391816-2	chr2	165391716	165391916	+	808.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3557.0	NM_178411	228876.0	Mm.26316	NM_178411	ENSMUSG00000017667	Zfp334	D2Ertd535e	zinc finger protein 334	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-65390092-1	chr15	65389992	65390192	+	549.0	f1_balb.idr	Intergenic	Lx|LINE|L1	-396928.0	NM_133766	76740.0	Mm.260647	NM_133766	ENSMUSG00000015002	Efr3a	A130089M23Rik|BB071175|C76891|C920006C10Rik|D030063F01Rik|mKIAA0143	EFR3 homolog A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123079161-2	chr5	123079061	123079261	+	776.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039723, intron 1 of 11)	intron (NM_001039723, intron 1 of 11)	2886.0	NM_001039723	330189.0	Mm.391872	NM_001039723	ENSMUSG00000054434	Tmem120b	-	transmembrane protein 120B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-123103420-4	chr3	123103322	123103522	+	852.30835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080451, intron 4 of 4)	intron (NM_080451, intron 4 of 4)	-68435.0	NM_001355462	59006.0	Mm.141157	NM_021503	ENSMUSG00000028116	Myoz2	1110012I24Rik|Fatz-2|Myozl2	myozenin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-73675627-4	chr15	73675513	73675713	+	894.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31892.0	NM_173365	239530.0	Mm.122997	NM_173365	ENSMUSG00000045281	Gpr20	A430106B11Rik	G protein-coupled receptor 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-60667029-2	chr18	60666929	60667129	+	779.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045401, exon 2 of 3)	non-coding (NR_045401, exon 2 of 3)	3619.0	NR_045401	328963.0	Mm.417203	NR_045401		G630071F17Rik	G630071F17	RIKEN cDNA G630071F17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-65882564-2	chr5	65882464	65882664	+	802.583313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081105, intron 1 of 2)	intron (NM_001081105, intron 1 of 2)	18995.0	NM_001081105	74734.0	Mm.20323	NM_001081105	ENSMUSG00000029204	Rhoh	5830400A04Rik|AU019774|Arhh	ras homolog family member H	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-110716346-2	chr9	110716246	110716446	+	736.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26264.0	NM_001083936	19228.0	Mm.3542	NM_011199	ENSMUSG00000032492	Pth1r	PPR|Pthr|Pthr1	parathyroid hormone 1 receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-5162686-4	chr18	5162594	5162794	+	787.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_153824)	TTS (NR_153824)	3037.0	NR_153824	102637682.0	Mm.451914	NR_153824		Gm26682	Gm38715	predicted gene, 26682	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-145193617-4	chr6	145193524	145193724	+	931.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177222, intron 7 of 15)	intron (NM_177222, intron 7 of 15)	17346.0	NM_177222	320662.0	Mm.207779	NM_177222	ENSMUSG00000043541	Casc1	A230084G12Rik|Las1	cancer susceptibility candidate 1	protein-coding	3.16205102726875	3.56268036745046	4.13992781787777	3.73336030142874	3.09660003749108	4.67433061145581	3.1498650020521	3.7521506381763	0.194803625335984	0.73204089531231	0.998431161219273
Merged-chr2-152332575-4	chr2	152332460	152332660	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001083921)	promoter-TSS (NM_001083921)	79.0	NM_019705	24105.0	Mm.182145	NM_019705	ENSMUSG00000027466	Rbck1	AL033326|HOIL-1|HOIL-1L|UIP28|Ubce7ip3	RanBP-type and C3HC4-type zinc finger containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-25302514-2	chr15	25302414	25302614	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	111250.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-8823339-3	chr4	8823240	8823440	+	886.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355382, intron 7 of 36)	intron (NM_001355382, intron 7 of 36)	72016.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-35727303-2	chr2	35727203	35727403	+	830.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001602, intron 12 of 13)	intron (NM_001001602, intron 12 of 13)	30571.0	NM_001290639	69601.0	Mm.29629	NM_001001602	ENSMUSG00000026883	Dab2ip	2310011D08Rik|AI480459|Aip1|mKIAA1743	disabled 2 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81582479-2	chr10	81582379	81582579	+	747.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019725, intron 10 of 20)	intron (NM_019725, intron 10 of 20)	7192.0	NM_001252401	21886.0	Mm.38608	NM_019725	ENSMUSG00000034771	Tle2	Grg2|mKIAA4188	transducin-like enhancer of split 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-92303572-3	chr9	92303469	92303669	+	852.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5808.0	NM_001033184	78459.0	Mm.179195	NM_001033184	ENSMUSG00000074139	1700057G04Rik	-	RIKEN cDNA 1700057G04 gene	protein-coding	2.21686307352685	1.54751931281726	1.46097409453076	1.70211893310953	4.49848531160453	4.49196330103972	5.7073053002977	4.74055865484909	5.1873091029293	4.31435745127632e-11	1.0083830006574e-08
Merged-chr5-43842880-4	chr5	43842777	43842977	+	900.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009763, exon 9 of 9)	3' UTR (NM_009763, exon 9 of 9)	23984.0	NM_009763	12182.0	Mm.246332	NM_009763	ENSMUSG00000029082	Bst1	114/A10|A530073F09|BP-3|Bp3|Bsta1|CD157|Ly65	bone marrow stromal cell antigen 1	protein-coding	-1.32440223303897	-1.29339468673833	-0.717877708899544	-1.31276353204239	-1.32392690786997	-1.29109028300231	-1.30162128075409	-1.31119997543009	-2.49510383040271	0.470258445164311	1
Merged-chr11-54812947-4	chr11	54812853	54813053	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6966.0	NR_040284	432562.0	Mm.406948	NR_040284	ENSMUSG00000086789	Lyrm7os	Gm12228	LYR motif containing 7, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-32693947-4	chr18	32693848	32694048	+	899.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045381, intron 4 of 4)	intron (NR_045381, intron 4 of 4)	-121435.0	NM_021367	53603.0	Mm.143716	NM_021367	ENSMUSG00000024379	Tslp	-	thymic stromal lymphopoietin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-98352556-2	chr7	98352456	98352656	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001168539, exon 2 of 2)	exon (NM_001168539, exon 2 of 2)	8732.0	NM_001168540	244152.0	Mm.25317	NM_001024619	ENSMUSG00000049580	Tsku	9530051K01Rik|E2ig4|Lrrc54|Tsk	tsukushi, small leucine rich proteoglycan	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-81037563-4	chr3	81037384	81037584	+	966.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_019971, exon 1 of 6)	exon (NM_019971, exon 1 of 6)	1068.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-25189218-3	chr12	25189164	25189364	+	939.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60090.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-73600170-2	chr15	73600070	73600270	+	797.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357747, intron 2 of 7)	intron (NM_001357747, intron 2 of 7)	-3644.0	NM_001168255	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-113634412-3	chr5	113634312	113634512	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008153, intron 1 of 2)	intron (NM_008153, intron 1 of 2)	9191.0	NM_001359060	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3835018-1	chr4	3834918	3835118	+	634.0	f0_balb.idr	intron (NM_026147, intron 2 of 3)	intron (NM_026147, intron 2 of 3)	637.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	1.93662986621484	1.14300486339801	1.86910958046732	2.14695742700544	2.13510089601305	1.40926092322487	1.12376156289028	2.55317035479757	0.312779513514149	0.784063220145988	0.998431161219273
Merged-chr15-102458530-3	chr15	102458454	102458654	+	806.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001170911)	promoter-TSS (NM_001170911)	-616.0	NM_001170911	66151.0	Mm.393955	NM_025385	ENSMUSG00000023048	Prr13	1110020C13Rik|2010324E22Rik	proline rich 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80694807-4	chr10	80694719	80694919	+	974.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172457, intron 1 of 3)	intron (NM_172457, intron 1 of 3)	7001.0	NM_172457	208228.0	Mm.49309	NM_172457	ENSMUSG00000003348	Mob3a	5330417K06Rik|A630029F06|AV218468|Mobkl2a	MOB kinase activator 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-82696223-2	chr10	82696085	82696285	+	813.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2822.0	NM_001081218	67933.0	Mm.127405	NM_026462	ENSMUSG00000020246	Hcfc2	1700129L13Rik|AU019838|fkls	host cell factor C2	protein-coding	1.175003985928	0.640617026868773	0.627449720525103	1.64280610454557	1.69239933152016	0.643550195080644	0.630376192350009	1.13786773696967	0.0495313366524168	0.975601037262568	0.998431161219273
Merged-chr10-81601045-4	chr10	81600956	81601156	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346695)	promoter-TSS (NM_001346695)	-156.0	NM_001346695	114606.0	Mm.206764	NM_053254	ENSMUSG00000034758	Tle6	1810057E06Rik|Grg6	transducin-like enhancer of split 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-60047591-2	chr5	60047491	60047691	+	578.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-61589.0	NR_040682	71057.0	Mm.50817	NR_040682	ENSMUSG00000106013	4933402J10Rik	-	RIKEN cDNA 4933402J10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-75639671-4	chr7	75639504	75639704	+	854.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 8 of 36)	intron (NM_029332, intron 8 of 36)	184070.0	NM_029332	75547.0	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-6531378-3	chr18	6531287	6531487	+	844.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-15279.0	NM_007935	13831.0	Mm.312133	NM_007935	ENSMUSG00000024240	Epc1	2400007E14Rik|5730566F07Rik|A930032N02Rik|mir-1893	enhancer of polycomb homolog 1	protein-coding	1.37487324644496	1.81188652435156	1.96962048917677	1.57799443152798	1.73434425410619	1.10868160420275	1.76443301921147	1.71076935038288	-0.298547822216151	0.787072064440437	0.998431161219273
Merged-chr7-129501573-4	chr7	129501477	129501677	+	922.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-90286.0	NM_172255	207425.0	Mm.229323	NM_172255	ENSMUSG00000042055	Wdr11	2900055P10Rik|AW489876|Brwd2|mKIAA1351	WD repeat domain 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-33607766-5	chr8	33607667	33607867	+	796.159973	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017374, intron 1 of 6)	B1F1|SINE|Alu	8146.0	NM_017374	19053.0	Mm.29301	NM_017374	ENSMUSG00000009630	Ppp2cb	AI115466|D8Ertd766e|PP2Ac	protein phosphatase 2 (formerly 2A), catalytic subunit, beta isoform	protein-coding	1.65372852242502	1.86583803340609	1.79941884393692	1.04706201210344	1.02095893293909	2.42103388755915	1.8142894918738	1.87691817380274	0.725513164879861	0.532728399721317	0.952082138848632
Merged-chr3-105796887-3	chr3	105796793	105796993	+	640.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145541, intron 1 of 7)	intron (NM_145541, intron 1 of 7)	4488.0	NM_145541	109905.0	Mm.101922	NM_145541	ENSMUSG00000068798	Rap1a	AI848598|G-22K|Krev-1|Rap1	RAS-related protein 1a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25706994-4	chr7	25706898	25707098	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12055.0	NM_028771	52132.0	Mm.278798	NM_028771	ENSMUSG00000002608	Ccdc97	1200014H14Rik|2810446P04Rik|AA545218|D7Ertd462e	coiled-coil domain containing 97	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-144628201-3	chr3	144628099	144628299	+	731.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR73|LTR|ERV1	57772.0	NM_053102	93684.0	Mm.29812	NM_053102	ENSMUSG00000037072	Selenof	9430015P09Rik|Sep15	selenoprotein F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-43164360-1	chr13	43164260	43164460	+	847.0	f0_balb.idr	intron (NM_001252639, intron 4 of 7)	intron (NM_001252639, intron 4 of 7)	7141.0	NM_001252639	67046.0	Mm.269213	NM_025935	ENSMUSG00000021368	Tbc1d7	2610009C09Rik	TBC1 domain family, member 7	protein-coding	0.886951531502988	0.410735840516202	0.395923575529961	0.384179932803343	1.14192224554866	0.414014588018864	2.04055311077754	0.619606565180205	2.96289787650953	0.0821577847687845	0.43849159326329
Merged-chr1-157248252-4	chr1	157248159	157248359	+	888.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177644, intron 3 of 17)	intron (NM_177644, intron 3 of 17)	-139579.0	NM_001305063	73435.0	Mm.116705	NM_028540	ENSMUSG00000026592	Tex35	1700057K13Rik	testis expressed 35	protein-coding	1.48991603405109	0.93277691326271	1.64769826220827	0.690477139006958	0.848751119442234	0.715076062431674	1.35651873881635	1.04662468626082	-0.999458162005889	0.488246524436552	0.933453007555711
Merged-chr7-145279030-2	chr7	145278930	145279130	+	642.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_132643, intron 3 of 22)	intron (NR_132643, intron 3 of 22)	4981.0	NR_132644	233979.0	Mm.102235	NM_146206	ENSMUSG00000048677	Tpcn2	D830047E22Rik|Gm35086	two pore segment channel 2	protein-coding	1.58144200838073	1.13541881645528	0.727409911443747	0.7180697125886	1.25199522819094	0.742067719127044	1.5879091661301	1.20565896810515	0.520523835941795	0.726628708811044	0.998431161219273
Merged-chr5-95914284-4	chr5	95914171	95914371	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42668.0	NM_018866	55985.0	Mm.10116	NM_018866	ENSMUSG00000023078	Cxcl13	4631412M08Rik|ANGIE2|Angie|BCA-1|BLC|BLR1L|Scyb13	chemokine (C-X-C motif) ligand 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-33401402-4	chr6	33401297	33401497	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347089, intron 7 of 9)	Lx8b|LINE|L1	152269.0	NM_001347089	20336.0	Mm.265512	NM_009148	ENSMUSG00000029763	Exoc4	C78892|Sec8|Sec8l1	exocyst complex component 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-84872530-2	chr2	84872430	84872630	+	801.666687	f1_balb.idr|f1_c57bl6.idr	exon (NM_199223, exon 3 of 3)	exon (NM_199223, exon 3 of 3)	14162.0	NM_199223	269295.0	Mm.86447	NM_199223	ENSMUSG00000050896	Rtn4rl2	Ngr2|Ngrh1|Ngrl3	reticulon 4 receptor-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-48818020-4	chr6	48817909	48818109	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22979.0	NM_023056	65963.0	Mm.28385	NM_023056	ENSMUSG00000029810	Tmem176b	1810009M01Rik|Clast1|Lr8	transmembrane protein 176B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-97205759-2	chr3	97205659	97205859	+	952.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_029933, exon 10 of 10)	exon (NM_029933, exon 10 of 10)	21605.0	NM_029933	77578.0	Mm.226175	NM_029933	ENSMUSG00000038256	Bcl9	2610202E01Rik|8030475K17Rik|A330041G23Rik|Gm130	B cell CLL/lymphoma 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64338494-1	chr5	64338394	64338594	+	552.0	f1_c57bl6.idr	intron (NM_001289514, intron 16 of 18)	intron (NM_001289514, intron 16 of 18)	108137.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	2.59482044695321	2.31342843285625	1.28098062986105	2.73869316154282	1.21071776209584	1.83253679580048	2.67771577285955	2.59254269000825	-0.27982722432591	0.785655413841686	0.998431161219273
Merged-chr16-17928805-4	chr16	17928702	17928902	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153150)	promoter-TSS (NM_153150)	-583.0	NM_153150	13358.0	Mm.229291	NM_153150	ENSMUSG00000003528	Slc25a1	1300019P08Rik|2610100G11Rik|AI194714|Ctp|Dgsj|Slc20a3	solute carrier family 25 (mitochondrial carrier, citrate transporter), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-53266674-2	chr19	53266574	53266774	+	604.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11469.0	NR_036590	69319.0	Mm.57452	NR_036590		1700001K23Rik	-	RIKEN cDNA 1700001K23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131112137-2	chr1	131112037	131112237	+	636.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14294.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-75449094-4	chr12	75449017	75449217	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32336.0	NM_175644	217674.0	Mm.252250	NM_175644	ENSMUSG00000048982	Gphb5	OGH|Zlut1	glycoprotein hormone beta 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-133094518-4	chr3	133094397	133094597	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027927, intron 1 of 6)	intron (NM_027927, intron 1 of 6)	-2458.0	NM_001356309	67553.0	Mm.304899	NM_026231	ENSMUSG00000028018	Gstcd	4933434L15Rik	glutathione S-transferase, C-terminal domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46048035-1	chr19	46047935	46048135	+	843.0	f1_c57bl6.idr	Intergenic	Intergenic	-2724.0	NM_001113408	16825.0	Mm.327442	NM_010697	ENSMUSG00000025223	Ldb1	CLIM2|NLI	LIM domain binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-69657806-4	chr3	69657700	69657900	+	964.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58840.0	NM_020026	26879.0	Mm.153710	NM_020026	ENSMUSG00000043300	B3galnt1	B3galt3|b3GT3	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90642472-2	chr2	90642372	90642572	+	623.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34743.0	NM_021512	59015.0	Mm.24532	NM_021512	ENSMUSG00000051329	Nup160	160kDa|2810011M03Rik|AA414952|AU020188|Gtl-13|Gtl1-13|Gtl13|mKIAA0197	nucleoporin 160	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-8518660-2	chr12	8518532	8518732	+	625.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18623.0	NM_007483	11852.0	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	0.0404095767208174	-0.472527137776507	-0.475873328366136	-0.478442177759635	-0.229133695745411	-0.471770275548318	-0.475136912395123	-0.190670418661071	-0.1611400211514	0.950926706814507	1
Merged-chr4-47280341-4	chr4	47280241	47280441	+	859.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009928, intron 17 of 39)	intron (NM_009928, intron 17 of 39)	72329.0	NM_009928	12819.0	Mm.233547	NM_009928	ENSMUSG00000028339	Col15a1	-	collagen, type XV, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-111979577-3	chr13	111979485	111979685	+	968.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	111649.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	2.16380978363427	2.2895843026953	2.05644165975632	2.69451050275703	1.9135984782359	2.14317051885281	3.34587992874365	2.29372456692753	0.511817856444113	0.545306865461809	0.956332845226679
Merged-chr10-98744920-2	chr10	98744820	98745020	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-169722.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-61938451-1	chr18	61938351	61938551	+	638.5	f0_balb.idr	Intergenic	Intergenic	-14624.0	NM_172628	225608.0	Mm.262320	NM_172628	ENSMUSG00000045629	Sh3tc2	D430044G18Rik	SH3 domain and tetratricopeptide repeats 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-93467574-1	chr4	93467474	93467674	+	762.0	f0_balb.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-132063.0	NM_026954	69136.0	Mm.171558	NM_026954	ENSMUSG00000054000	Tusc1	2200001D17Rik|TSG-9	tumor suppressor candidate 1	protein-coding	2.47866858322521	3.05466885450896	2.35542711264337	1.36075947357565	2.66840847201117	2.45814345483842	1.66996440721642	2.95691118096022	0.153118142371451	0.86598288709837	0.998431161219273
Merged-chr3-107101387-1	chr3	107101287	107101487	+	621.0	f1_c57bl6.idr	promoter-TSS (NM_008417)	promoter-TSS (NM_008417)	-180.0	NM_008417	16490.0	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	-1.8429182434137	-1.8129848525291	-1.82203695700074	-1.54461076807193	-1.84081697472045	-1.81102322372834	-1.81998775896484	-1.82814164409203	-1.43114970378833	0.684630132144154	1
Merged-chr6-122854787-4	chr6	122854684	122854884	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009779, intron 1 of 1)	intron (NM_009779, intron 1 of 1)	1373.0	NM_009779	12267.0	Mm.2408	NM_009779	ENSMUSG00000040552	C3ar1	AZ3B|C3AR|HNFAG09	complement component 3a receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-32184286-4	chr14	32184219	32184419	+	970.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016897, intron 6 of 6)	intron (NM_016897, intron 6 of 6)	17572.0	NM_016897	53600.0	Mm.303703	NM_016897	ENSMUSG00000013701	Timm23	Tim23	translocase of inner mitochondrial membrane 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-87842304-4	chr10	87842214	87842414	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15951.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-30786291-3	chr13	30786190	30786390	+	954.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37057.0	NM_013674	16364.0	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125219159-4	chr6	125219060	125219260	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080557, intron 3 of 3)	intron (NM_001080557, intron 3 of 3)	3579.0	NM_009496	22317.0	Mm.32321	NM_009496	ENSMUSG00000030337	Vamp1	Syb-1|Syb1|VAMP-1|lew	vesicle-associated membrane protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88592154-4	chr3	88592059	88592259	+	793.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	12551.0	NM_025448	66256.0	Mm.7091	NM_025448	ENSMUSG00000041355	Ssr2	1500032E05Rik|AI315033|AU020133|SSR-beta|TLAP|TRAPB|TRAPbeta	signal sequence receptor, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-147010850-4	chr1	147010744	147010944	+	927.258301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3A|LINE|L1	513157.0	NM_001145807	215378.0	Mm.441817	NM_153539	ENSMUSG00000035131	Brinp3	B830045N13Rik|Fam5c	bone morphogenetic protein/retinoic acid inducible neural specific 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-115731795-4	chr4	115731706	115731906	+	939.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6267.0	NM_172698	230648.0	Mm.283565	NM_172698	ENSMUSG00000034210	Efcab14	4732418C07Rik	EF-hand calcium binding domain 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102444951-2	chr12	102444828	102445028	+	761.633301	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur2|SINE|Alu	-5115.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	-0.654203750232095	-0.906716396103307	-0.345559305711495	-0.917224069321165	-0.920361906015164	-0.904044330727832	-0.914362853589523	-0.916835673576791	-2.96158595613085	0.328953899946767	1
Merged-chr17-50751000-2	chr17	50750900	50751100	+	610.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_028162, intron 19 of 21)	intron (NM_028162, intron 19 of 21)	52319.0	NM_001297747	12228.0	Mm.392910	NM_009770	ENSMUSG00000022863	Btg3	ANA|tob5	B cell translocation gene 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-23247053-6	chr1	23246862	23247062	+	844.555542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25307.0	NR_029533	387225.0		NR_029533	ENSMUSG00000065405	Mir30a	Mirn30a|mir-30a|mmu-mir-30a	microRNA 30a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-149635960-2	chr5	149635860	149636060	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347534, intron 1 of 16)	CpG	355.0	NM_013559	15505.0	Mm.270681	NM_013559	ENSMUSG00000029657	Hsph1	105kDa|AI790491|Hsp105|Hsp110|hsp-E7I|hsp110/105	heat shock 105kDa/110kDa protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-154613440-4	chr2	154613347	154613547	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199304)	promoter-TSS (NM_199304)	79.0	NM_199304	228807.0	Mm.103555	NM_199304	ENSMUSG00000059842	Zfp341	Znf341	zinc finger protein 341	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-85085435-2	chr8	85085335	85085535	+	720.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_010764, exon 4 of 24)	exon (NM_010764, exon 4 of 24)	2166.0	NM_010764	17159.0	Mm.4219	NM_010764	ENSMUSG00000005142	Man2b1	AW107687|LAMAN	mannosidase 2, alpha B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-34651375-1	chr18	34651275	34651475	+	961.0	f1_balb.idr	intron (NM_178347, intron 2 of 15)	CpG	361.0	NM_178347	52563.0	Mm.196638	NM_178347	ENSMUSG00000024370	Cdc23	6030435O18|D18Ertd243e	CDC23 cell division cycle 23	protein-coding	1.52482940477632	1.09669169109146	1.65079060528844	2.22419214386486	2.04474734967327	1.72131999236564	1.08037628462431	2.06710440660807	0.269045479143211	0.817382349831743	0.998431161219273
Merged-chr4-134292336-1	chr4	134292236	134292436	+	887.0	f1_c57bl6.idr	Intergenic	Intergenic	-4490.0	NM_146156	230809.0	Mm.22778	NM_146156	ENSMUSG00000050890	Pdik1l	BC027088|stk35l2	PDLIM1 interacting kinase 1 like	protein-coding	4.11337519794877	2.15975487048526	3.43525967146833	4.22705238360072	4.50428341331262	3.37602116539422	3.36464072751146	3.99521633700311	0.281972688220299	0.640942520197122	0.982599433509505
Merged-chr2-25459883-2	chr2	25459783	25459983	+	813.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153557, intron 5 of 6)	intron (NM_153557, intron 5 of 6)	1211.0	NM_153557	227622.0	Mm.261780	NM_153557	ENSMUSG00000047617	Paxx	D930050G13Rik	non-homologous end joining factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-74938378-1	chr15	74938278	74938478	+	546.0	f1_balb.idr	Intergenic	BGLII_Mur|LTR|ERVK	-16673.0	NM_001164039	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	1.70230635678962	1.92937307316904	1.17690281670553	2.6795141213096	1.10551923424027	3.03542699445124	2.61650124698063	1.96853690274104	0.825416522092333	0.440547205111846	0.909622771823657
Merged-chr3-131564677-4	chr3	131564596	131564796	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011863)	promoter-TSS (NM_011863)	-72.0	NM_001289479	23971.0	Mm.244912	NM_011863	ENSMUSG00000028032	Papss1	AI325286|Asapk|SK1	3'-phosphoadenosine 5'-phosphosulfate synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-105910654-4	chr3	105910564	105910764	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027025, intron 1 of 6)	intron (NM_027025, intron 1 of 6)	6243.0	NM_009631	11542.0	Mm.235024	NM_009631	ENSMUSG00000000562	Adora3	A3AR|A3R|AA3R|ARA3|Gpcr2	adenosine A3 receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53144393-2	chr4	53144293	53144493	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 1 of 49)	intron (NM_013454, intron 1 of 49)	15502.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-57561118-7	chr9	57561010	57561210	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_022813, exon 1 of 9)	exon (NM_022813, exon 1 of 9)	166.0	NM_022813	24044.0	Mm.286069	NM_022813	ENSMUSG00000040188	Scamp2	AI875466|Sc2	secretory carrier membrane protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41369968-4	chr19	41369876	41370076	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 2 of 16)	intron (NM_031376, intron 2 of 16)	15094.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81549062-2	chr10	81548962	81549162	+	712.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4016.0	NM_010301	14672.0	Mm.260925	NM_010301	ENSMUSG00000034781	Gna11	Dsk7|E430025L19	guanine nucleotide binding protein, alpha 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-84773997-3	chr12	84773857	84774057	+	813.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023409)	promoter-TSS (NM_023409)	687.0	NM_028863	74316.0	Mm.25719	NM_028863	ENSMUSG00000021241	Isca2	0710001C05Rik|5730594E03Rik|Hbld1	iron-sulfur cluster assembly 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-73273857-4	chr2	73273678	73273878	+	569.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001005343, exon 2 of 2)	exon (NM_001005343, exon 2 of 2)	1852.0	NM_001005343	381373.0	Mm.330293	NM_001005343	ENSMUSG00000068859	Sp9	-	trans-acting transcription factor 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135772714-4	chr5	135772605	135772805	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029659, intron 1 of 8)	intron (NM_029659, intron 1 of 8)	5596.0	NM_001289554	76571.0	Mm.247666	NM_029659	ENSMUSG00000019178	Styxl1	1700011C14Rik|Dusp24|Mkstyx	serine/threonine/tyrosine interacting-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-6750656-2	chr17	6750556	6750756	+	611.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009510, intron 6 of 12)	intron (NM_009510, intron 6 of 12)	32124.0	NM_009510	22350.0	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-69157757-4	chr3	69157656	69157856	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_126533)	TTS (NR_126533)	26523.0	NR_126533	381452.0	Mm.331067	NM_001243000	ENSMUSG00000094763	Gm1647	-	predicted gene 1647	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-155381806-4	chr2	155381682	155381882	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178111)	promoter-TSS (NM_178111)	-74.0	NM_178111	68728.0	Mm.293605	NM_178111	ENSMUSG00000038375	Trp53inp2	1110029F20Rik|Tp53inp2	transformation related protein 53 inducible nuclear protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-139950554-4	chr7	139950485	139950685	+	870.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6729.0	NM_009482	22286.0	Mm.10205	NM_009482	ENSMUSG00000047751	Utf1	AI505934	undifferentiated embryonic cell transcription factor 1	protein-coding	-2.18233058068552	-2.15536956715525	-2.16352280018114	-2.04193253143548	-2.18043796738662	-2.15360272754651	-2.16167708693786	-2.16902129354933	-0.683654500252594	0.846597994014493	1
Merged-chr13-105054491-4	chr13	105054382	105054582	+	987.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_029879, exon 1 of 6)	5' UTR (NM_029879, exon 1 of 6)	448.0	NM_029879	52882.0	Mm.100348	NM_029879	ENSMUSG00000021719	Rgs7bp	A930030I01Rik|AI842293|D13Bwg1146e|R7bp	regulator of G-protein signalling 7 binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24698963-2	chr17	24698858	24699058	+	621.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001357836, exon 5 of 9)	exon (NM_001357836, exon 5 of 9)	2724.0	NM_001357836	71893.0	Mm.390971	NM_027988	ENSMUSG00000019320	Noxo1	2310034C04Rik|P41NOX|P41NOXA|P41NOXB|P41NOXC|Snx28|hslt	NADPH oxidase organizer 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-149943859-4	chr1	149943756	149943956	+	811.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008869, intron 1 of 17)	Lx8|LINE|L1	17434.0	NM_008869	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64961774-3	chr5	64961676	64961876	+	935.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1680.0	NM_011604	21899.0	Mm.42146	NM_011604	ENSMUSG00000051498	Tlr6	-	toll-like receptor 6	protein-coding	0.683375686062973	1.15926797750362	0.757259512896431	0.729814882712959	0.563430153661233	0.438744185412419	0.43124319023848	0.857918954096564	-1.57780054105783	0.332866887563592	1
Merged-chr11-21549361-2	chr11	21549261	21549461	+	971.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	22573.0	NM_008618	17449.0	Mm.212703	NM_008618	ENSMUSG00000020321	Mdh1	B230377B03Rik|D17921|MDH-s|MDHA|Mor-2|Mor2	malate dehydrogenase 1, NAD (soluble)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-31005183-2	chr13	31005083	31005283	+	637.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-31136.0	NM_025588	66482.0	Mm.293510	NM_025588	ENSMUSG00000021357	Exoc2	2410030I24Rik|AI648199|Sec5|Sec5l1	exocyst complex component 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70208409-2	chr14	70208309	70208509	+	611.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011366)	promoter-TSS (NM_011366)	-738.0	NM_011366	20410.0	Mm.5068	NM_011366	ENSMUSG00000022091	Sorbs3	SCAM-1|SH3P3|Sh3d4|vinexin-g	sorbin and SH3 domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-29901733-2	chr15	29901633	29901833	+	628.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-188329.0	NR_039542	100628607.0		NR_039542	ENSMUSG00000092639	Mir3964	mmu-mir-3964|mu-mir-3964	microRNA 3964	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43726634-2	chr4	43726392	43726592	+	867.0	f0_balb.idr|f1_balb.idr	promoter-TSS (NM_027511)	promoter-TSS (NM_027511)	-706.0	NM_027511	100039781.0	Mm.18796	NM_027511	ENSMUSG00000071001	Hrct1	3830408D24Rik	histidine rich carboxyl terminus 1	protein-coding	0.210501808997771	0.612462037983044	0.226114365701499	0.398155528756518	1.06082139843732	0.897124655485293	0.227778462485577	0.221295639087178	1.83227854831882	0.34681013547313	1
Merged-chr19-42744344-3	chr19	42744217	42744417	+	778.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029011, intron 4 of 15)	intron (NM_029011, intron 4 of 15)	8458.0	NM_029011	74580.0	Mm.329858	NM_029011	ENSMUSG00000060224	Pyroxd2	3830409H07Rik|4833409A17Rik	pyridine nucleotide-disulphide oxidoreductase domain 2	protein-coding	2.55217563278732	3.93388437009702	3.4988178431896	2.89898739280089	1.72145073117375	2.532854752744	1.34531772510479	1.58787114304519	-2.86612679469258	0.000724487219176453	0.014969685974189
Merged-chr19-61031922-1	chr19	61031822	61032022	+	820.666687	f0_balb.idr	intron (NM_018869, intron 3 of 15)	(T)n|Simple_repeat|Simple_repeat	108918.0	NR_131956	414758.0	Mm.100056	NM_001001737	ENSMUSG00000074733	Zfp950	5830428H23Rik|AU016073|BC055757|Gm34518|Zfp826|mszf84	zinc finger protein 950	protein-coding	-0.551420657415748	-0.538711406277857	-0.542865720015577	-0.546077153722024	-0.149083059645637	0.224875528462801	-0.541948672128187	-0.545515727175258	3.55593588242333	0.186893430861633	1
Merged-chr14-60284051-4	chr14	60283967	60284167	+	906.133301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144843, intron 4 of 13)	L1_Mur3|LINE|L1	18862.0	NM_144843	219135.0	Mm.247007	NM_144843	ENSMUSG00000021987	Mtmr6	4022440C11Rik|AI428804|AU041072	myotubularin related protein 6	protein-coding	-0.149966365696914	-0.136176533622589	0.507314254002752	-0.144193853083223	0.112512917434701	0.0548157060315831	-0.139708813640125	0.152919662047786	-0.114588067609979	0.95880339965923	1
Merged-chr15-62469990-4	chr15	62469887	62470087	+	894.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA4|LINE|L1	-250536.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-140619927-4	chr6	140619805	140620005	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-2758.0	NM_178803	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-36930627-3	chr15	36930535	36930735	+	665.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	76767.0	NM_026521	68036.0	Mm.371631	NM_026521	ENSMUSG00000062397	Zfp706	3110006P09Rik|AA793007|AW536850|C77232|Znf706	zinc finger protein 706	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91861527-4	chr16	91861413	91861613	+	981.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110275, intron 25 of 28)	intron (NM_001110275, intron 25 of 28)	70117.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-102511123-4	chr4	102511042	102511242	+	947.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019840, intron 5 of 14)	intron (NM_019840, intron 5 of 14)	-58918.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-45254612-4	chr9	45254497	45254697	+	918.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_136903, exon 6 of 6)	non-coding (NR_136903, exon 6 of 6)	12110.0	NR_106054	102466803.0		NR_106054	ENSMUSG00000098361	Mir7086	Gm27643|mmu-mir-7086	microRNA 7086	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-69296764-4	chr12	69296676	69296876	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027117)	promoter-TSS (NM_027117)	95.0	NM_027117	69554.0	Mm.234368	NM_027117	ENSMUSG00000020978	Klhdc2	2310022K15Rik|D12Ertd522e|HCLP-1|LCP	kelch domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-104545968-4	chr11	104545875	104546075	+	896.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145436, intron 1 of 18)	B3A|SINE|B2	4645.0	NM_001285990	217232.0	Mm.89845	NM_145436	ENSMUSG00000020687	Cdc27	AI452358|APC3|BC023187	cell division cycle 27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-107403078-2	chr14	107402978	107403178	+	657.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	-916558.0	NR_045938	73631.0	Mm.48862	NR_045938	ENSMUSG00000099794	1700128A07Rik	-	RIKEN cDNA 1700128A07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90552600-3	chr2	90552515	90552715	+	842.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	L4_A_Mam|LINE|RTE-X	28032.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	3.05511224518924	3.34256365577384	2.28317189229376	1.80530418077132	3.21800177235764	3.36679542477969	2.47127710388115	3.5615408417782	0.785290143926011	0.281113455152293	0.78400185225177
Merged-chr11-98718074-2	chr11	98717974	98718174	+	760.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_011869, exon 6 of 26)	exon (NM_011869, exon 6 of 26)	11300.0	NM_001361994	23989.0	Mm.246493	NM_011869	ENSMUSG00000017210	Med24	911GSE|AU040102|AW547152|D11Ertd307e|DRIP100|Gse2|Pparb2|Pparbp2|R75526|Thrap4|Trap100	mediator complex subunit 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-64409040-4	chr7	64408958	64409158	+	736.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028626, intron 2 of 2)	intron (NM_028626, intron 2 of 2)	16436.0	NM_001355124	73724.0	Mm.10093	NM_028626	ENSMUSG00000033429	Mcee	1110007A04Rik	methylmalonyl CoA epimerase	protein-coding	0.721907912915385	1.09966991238749	0.460790042331498	0.454493518523561	0.729146105812291	0.470750756534594	1.16361618275754	0.901663943801937	0.679992712848841	0.684676736349876	1
Merged-chr11-90246447-2	chr11	90246347	90246547	+	679.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-3029.0	NM_026178	67468.0	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-105435426-4	chr14	105435316	105435516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045859, intron 2 of 2)	intron (NR_045859, intron 2 of 2)	7857.0	NR_045859	71362.0	Mm.410781	NR_045859	ENSMUSG00000115548	5430440P10Rik	-	RIKEN cDNA 5430440P10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-106419843-2	chr9	106419743	106419943	+	939.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9568.0	NM_001324533	19944.0	Mm.288696	NM_009082	ENSMUSG00000048758	Rpl29	Rpl43	ribosomal protein L29	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-76778722-6	chr14	76778602	76778802	+	968.2666630000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18571.0	NR_153763	73883.0	Mm.489041	NR_153763		4930431P22Rik	-	RIKEN cDNA 4930431P22 gene	ncRNA	1.24471005479558	2.23083928442453	1.87554628256489	1.90246729970432	0.703873695823631	0.76984877078444	0.749230660156779	0.73101702692709	-5.28766739716329	0.000303177505869618	0.00740337255513638
Merged-chr2-165056000-2	chr2	165055900	165056100	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_027852, intron 1 of 7)	intron (NR_027852, intron 1 of 7)	364.0	NM_011611	21939.0	Mm.271833	NM_011611	ENSMUSG00000017652	Cd40	AI326936|Bp50|GP39|HIGM1|IGM|IMD3|T-BAM|TRAP|Tnfrsf5|p50	CD40 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150257939-1	chr4	150257839	150258039	+	554.0	f1_balb.idr	Intergenic	Intergenic	20615.0	NM_001025388	433182.0	Mm.70666	NM_001025388	ENSMUSG00000059040	Eno1b	EG433182|Eno1|Gm5506	enolase 1B, retrotransposed	protein-coding	0.159129297823627	1.07073507560491	0.175290689123143	0.755717471373459	0.160643239035905	0.184795309589818	0.177009043818605	0.763238074366496	-1.47182001767433	0.478316252609424	1
Merged-chr5-139344272-4	chr5	139344208	139344408	+	890.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197980, intron 1 of 2)	intron (NM_197980, intron 1 of 2)	858.0	NM_197980	68033.0	Mm.261064	NM_197980	ENSMUSG00000045438	Cox19	1810074D02Rik|2810437L13Rik	cytochrome c oxidase assembly protein 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-42396613-4	chr6	42396504	42396704	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3634.0	NM_001001452	387514.0	Mm.377921	NM_001001452	ENSMUSG00000046652	Tas2r143	Gm1404|Tas2r43|mt2r36	taste receptor, type 2, member 143	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-103495811-2	chr2	103495705	103495905	+	593.5	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-10652.0	NM_009804	12359.0	Mm.4215	NM_009804	ENSMUSG00000027187	Cat	2210418N07|Cas-1|Cas1|Cs-1	catalase	protein-coding	1.90077952749871	1.50831178651217	1.061290703244	2.00901227055467	1.73281115488813	1.08443558739173	1.99098700519486	1.70839173533674	-0.0183204598396281	0.987614172327634	0.998431161219273
Merged-chr18-80986285-2	chr18	80986185	80986385	+	671.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_178280, intron 1 of 3)	CpG	293.0	NM_178280	20689.0	Mm.215917	NM_178280	ENSMUSG00000024565	Sall3	B130022O04Rik|Msal|Msal-1|Sal|Salt|Spalt	spalt like transcription factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44997655-4	chr7	44997540	44997740	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016849)	promoter-TSS (NM_016849)	-8.0	NR_045611	54131.0	Mm.3960	NM_016849	ENSMUSG00000003184	Irf3	C920001K05Rik|IRF-3	interferon regulatory factor 3	protein-coding	1.30481253859524	0.999386039735328	2.53347242758491	1.79329007936759	1.59273928417352	1.47621290043347	0.982246143885811	1.91347513489535	-0.781828281104476	0.517673957190185	0.947641799425091
Merged-chr6-115774015-1	chr6	115773915	115774115	+	608.0	f0_balb.idr	promoter-TSS (NM_025958)	promoter-TSS (NM_025958)	-542.0	NM_025958	67088.0	Mm.277683	NM_025958	ENSMUSG00000030319	Cand2	2210404G23Rik|Tp120b|mKIAA0667	cullin-associated and neddylation-dissociated 2 (putative)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-65535574-4	chr5	65535495	65535695	+	952.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1650.0	NM_016786	53323.0	Mm.319512	NM_016786	ENSMUSG00000029203	Ube2k	AW492011|D5Ertd601e|E2-25k|HIP-2|Hip2|Hypg|Lig	ubiquitin-conjugating enzyme E2K	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-27137122-4	chr8	27137029	27137229	+	870.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5781.0	NR_045840	71082.0	Mm.395259	NR_045840		4933416M07Rik	-	RIKEN cDNA 4933416M07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44357065-2	chr7	44356965	44357165	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001034115, exon 25 of 25)	exon (NM_001034115, exon 25 of 25)	17965.0	NM_027049	69349.0	Mm.358922	NM_027049	ENSMUSG00000008028	1700008O03Rik	-	RIKEN cDNA 1700008O03 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-91032634-3	chr10	91032537	91032737	+	863.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042558, intron 16 of 26)	intron (NM_001042558, intron 16 of 26)	50106.0	NM_001042558	11783.0	Mm.220289	NM_009684	ENSMUSG00000019979	Apaf1	6230400I06Rik|Apaf-1|Apaf1l|fog|mKIAA0413	apoptotic peptidase activating factor 1	protein-coding	4.27673795876056	4.46895753804539	4.79302016144251	3.8698316376011	4.22632709593371	4.07572633210436	3.71092027791877	1.77456998744645	-0.900654685777582	0.115563751344052	0.532735869092957
Merged-chr5-137872829-4	chr5	137872696	137872896	+	866.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1038.0	NM_001024932	545812.0	Mm.332769	NM_001024932	ENSMUSG00000066682	Pilrb2	EG545812	paired immunoglobin-like type 2 receptor beta 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-146271314-3	chr6	146271204	146271404	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019923, intron 37 of 56)	intron (NM_019923, intron 37 of 56)	230919.0	NM_010586	16439.0	Mm.7800	NM_010586	ENSMUSG00000030287	Itpr2	AI649341|InsP3R-2|InsP3R-5|Ip3r2|Itpr5|insP3R2	inositol 1,4,5-triphosphate receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-49854316-4	chr16	49854227	49854427	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1327.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-73469584-4	chr13	73469446	73469646	+	977.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145376, intron 1 of 13)	intron (NM_145376, intron 1 of 13)	2163.0	NM_145376	210992.0	Mm.284649	NM_145376	ENSMUSG00000021608	Lpcat1	2900035H07Rik|Aytl2|BB137372|BC005662|C87117|LPCAT|rd11	lysophosphatidylcholine acyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-129016315-1	chr5	129016215	129016415	+	584.0	f1_balb.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-3841.0	NM_009391	19384.0	Mm.297440	NM_009391	ENSMUSG00000029430	Ran	-	RAN, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-104216383-1	chr7	104216283	104216483	+	613.0	f0_balb.idr	Intergenic	Intergenic	-2412.0	NM_001013616	94088.0	Mm.274843	NM_001013616	ENSMUSG00000072244	Trim6	C430046K18Rik|D7Ertd684e	tripartite motif-containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122432975-4	chr8	122432884	122433084	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007806)	promoter-TSS (NM_007806)	-44.0	NM_007806	13057.0	Mm.271671	NM_007806	ENSMUSG00000006519	Cyba	b558|nmf333|p22-phox|p22phox	cytochrome b-245, alpha polypeptide	protein-coding	5.93597154221236	5.27280008176744	4.22490644290296	5.41573391465359	5.94369267118993	5.30700202534732	4.25899920731189	5.43923115103131	0.0241218460056392	0.951885663820703	0.998431161219273
Merged-chr14-73381276-2	chr14	73381176	73381376	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008410, intron 1 of 5)	intron (NM_008410, intron 1 of 5)	4013.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153161303-4	chr2	153161203	153161403	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133847)	promoter-TSS (NM_133847)	2.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-136581540-6	chr1	136581399	136581599	+	916.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-43402.0	NM_177643	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118795660-2	chr9	118795560	118795760	+	628.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 3 of 13)	intron (NM_001113514, intron 3 of 13)	83968.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-118627984-2	chr1	118627884	118628084	+	825.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023755)	promoter-TSS (NM_023755)	39.0	NM_023755	81879.0	Mm.24621	NM_023755	ENSMUSG00000026380	Tfcp2l1	1810030F05Rik|4932442M07Rik|AA575098|Cp2l1|Crtr-1|D930018N21Rik|LBP-9|Tcfcp2l1	transcription factor CP2-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-121958531-1	chr5	121958431	121958631	+	543.0	f1_balb.idr	intron (NM_007804, intron 2 of 22)	intron (NM_007804, intron 2 of 22)	89294.0	NM_007804	13048.0	Mm.156172	NM_007804	ENSMUSG00000042589	Cux2	1700051K22Rik|Cutl2|Cux-2	cut-like homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115845133-4	chr5	115845048	115845248	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007708)	promoter-TSS (NM_007708)	-508.0	NM_007708	12704.0	Mm.8321	NM_007708	ENSMUSG00000029516	Cit	C030025P15Rik|CRIK|CRIK-SK|Cit-k	citron	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-83117370-1	chr13	83117270	83117470	+	590.0	f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	-386664.0	NM_001347572	17260.0	Mm.24001	NM_025282	ENSMUSG00000005583	Mef2c	5430401D19Rik|9930028G15Rik|AV011172|Mef2	myocyte enhancer factor 2C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-43883797-3	chr7	43883707	43883907	+	889.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019928, intron 3 of 5)	intron (NM_019928, intron 3 of 5)	2635.0	NM_019928	56640.0	Mm.42080	NM_019928	ENSMUSG00000006948	Klk4	ESMP1|KLK-L1|PSTS|Prss17	kallikrein related-peptidase 4 (prostase, enamel matrix, prostate)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-65854231-4	chr17	65854150	65854350	+	932.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198949, intron 6 of 9)	intron (NM_001198949, intron 6 of 9)	30673.0	NM_001198949	19765.0	Mm.17009	NM_009067	ENSMUSG00000024096	Ralbp1	RLIP76|Rip1	ralA binding protein 1	protein-coding	1.73378840143159	0.916634667258619	0.900216998914951	0.887288637626642	1.90416659713548	1.656735310094	1.59575263594786	1.54204491619893	1.79148151972164	0.181295285588389	0.654649128156951
Merged-chr7-141475381-6	chr7	141475299	141475499	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252588)	promoter-TSS (NM_001252588)	163.0	NM_053082	64540.0	Mm.489619	NM_053082	ENSMUSG00000025511	Tspan4	AI325509|AI746565|D130042I01Rik|NAG-2|Tm4sf7|Tspan-4	tetraspanin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-59724080-2	chr9	59723980	59724180	+	584.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16316.0	NM_001033498	546134.0	Mm.297580	NM_001033498	ENSMUSG00000074259	Gramd2	BC064463|Gramd2a	GRAM domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30640190-2	chr2	30640090	30640290	+	550.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37821.0	NR_136917	665635.0	Mm.450149	NR_136917		Gm14486	-	predicted gene 14486	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118275242-4	chr11	118275120	118275320	+	974.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033528, intron 9 of 20)	intron (NM_001033528, intron 9 of 20)	15024.0	NM_001033528	72344.0	Mm.232293	NM_001033528	ENSMUSG00000033909	Usp36	2700002L06Rik|mKIAA1453	ubiquitin specific peptidase 36	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-178393151-2	chr1	178393051	178393251	+	745.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-12867.0	NM_026626	68226.0	Mm.252132	NM_026626	ENSMUSG00000026495	Efcab2	1700073K01Rik|D830011E08Rik	EF-hand calcium binding domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-38171516-4	chr16	38171426	38171626	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347232, intron 3 of 11)	intron (NM_001347232, intron 3 of 11)	-82266.0	NR_033221	414072.0	Mm.483602	NR_033221		BC031361	-	cDNA sequence BC031361	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-148837222-3	chr5	148837131	148837331	+	830.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	59268.0	NR_131106	78015.0	Mm.243839	NR_131106	ENSMUSG00000085740	4930505K14Rik	-	RIKEN cDNA 4930505K14 gene	ncRNA	1.21354381859572	0.191697681079834	0.379947324381109	0.177957711532197	0.796136283434643	0.193431066834929	0.385408406079446	0.179010682323411	-0.904706386886856	0.643058844681791	1
Merged-chr17-82857862-2	chr17	82857762	82857962	+	579.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	220363.0	NR_045094	100503434.0	Mm.187281	NR_045094		Gm19689	-	predicted gene, 19689	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-154547799-2	chr2	154547702	154547902	+	977.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021546, intron 5 of 12)	intron (NM_021546, intron 5 of 12)	-1102.0	NM_029305	75480.0	Mm.440434	NM_029305	ENSMUSG00000038523	1700003F12Rik	-	RIKEN cDNA 1700003F12 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-82843889-4	chr8	82843785	82843985	+	985.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19471.0	NM_177378	330812.0	Mm.491438	NM_177378	ENSMUSG00000047747	Rnf150	A630007N06Rik|C030044C12Rik|Greul5|mKIAA1214	ring finger protein 150	protein-coding	3.93200156409324	4.47464246575998	4.13625295236409	3.6255608656183	4.83124453858155	4.91876554547662	5.11635449257496	5.8363234906349	1.44586431153431	0.000233381241606657	0.00608719160173189
Merged-chr10-61715282-4	chr10	61715158	61715358	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001284300)	promoter-TSS (NM_001284300)	-5.0	NM_178058	71361.0	Mm.286309	NM_153779	ENSMUSG00000020085	Aifm2	5430437E11Rik|Amid|D730001I10Rik|PRG3	apoptosis-inducing factor, mitochondrion-associated 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-38351010-2	chr18	38350910	38351110	+	801.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-12017.0	NM_011937	26384.0	Mm.22374	NM_011937	ENSMUSG00000052102	Gnpda1	GNPDA|Gnp1|Gnpi|oscillin	glucosamine-6-phosphate deaminase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-87839864-2	chr6	87839764	87839964	+	788.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1105.0	NM_133934	57905.0	Mm.241546	NM_133934	ENSMUSG00000030056	Isy1	5830446M03Rik|AI181014|AU020769	ISY1 splicing factor homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-71405834-3	chr2	71405709	71405909	+	899.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026115, intron 2 of 10)	B1F|SINE|Alu	-8667.0	NR_039557	100628577.0		NR_039557	ENSMUSG00000093061	Mir5098	mmu-mir-5098|mu-mir-5098	microRNA 5098	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-41002108-2	chr8	41002011	41002211	+	910.0	f0_c57.idr|f1_c57bl6.idr	intron (NM_001005863, intron 8 of 13)	B1F1|SINE|Alu	-15357.0	NR_015457	78849.0	Mm.440930	NR_015457	ENSMUSG00000084960	B430010I23Rik	-	RIKEN cDNA B430010I23 gene	ncRNA	5.14855140291477	4.2730288993097	4.65153289688302	4.49057387970153	3.64761463405523	3.84450946012771	4.03154838063885	3.90849763704612	-1.08807698353081	0.00909416786165926	0.101691905374775
Merged-chr1-170287106-1	chr1	170287006	170287206	+	563.0	f1_balb.idr	TTS (NM_012009)	TTS (NM_012009)	9788.0	NR_153837	26904.0	Mm.57009	NM_012009	ENSMUSG00000102418	Sh2d1b1	EAT-2|EAT-2A|Eat2|Eat2a|Sh2d1b	SH2 domain containing 1B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-18426478-4	chr16	18426375	18426575	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013711)	promoter-TSS (NM_013711)	58.0	NM_013711	26462.0	Mm.390906	NM_013711	ENSMUSG00000075704	Txnrd2	AA118373|ESTM573010|TGR|Tr3|Trxr2|Trxrd2	thioredoxin reductase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-38929122-4	chr12	38929013	38929213	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	145402.0	NM_001163154	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-71377636-4	chr2	71377551	71377751	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10097.0	NM_172436	78830.0	Mm.30928	NM_172436	ENSMUSG00000027010	Slc25a12	2610002D09Rik|AI839531|B230107K20Rik|BB129864	solute carrier family 25 (mitochondrial carrier, Aralar), member 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-148436607-4	chr6	148436524	148436724	+	962.2291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198967, intron 1 of 19)	intron (NM_198967, intron 1 of 19)	7728.0	NM_198967	387314.0	Mm.137858	NM_198967	ENSMUSG00000030306	Tmtc1	Arg99|BC023818	transmembrane and tetratricopeptide repeat containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35047967-2	chr17	35047832	35048032	+	808.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1187.0	NM_001146215	17687.0	Mm.24192	NM_013600	ENSMUSG00000007035	Msh5	Mut5	mutS homolog 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-127146938-2	chr6	127146838	127147038	+	599.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009829, intron 2 of 4)	intron (NM_009829, intron 2 of 4)	-2451.0	NR_040274	77558.0	Mm.358918	NR_040273	ENSMUSG00000097166	9330179D12Rik	-	RIKEN cDNA 9330179D12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-94696164-4	chr8	94696085	94696285	+	760.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026385)	promoter-TSS (NM_026385)	57.0	NM_026385	67801.0	Mm.279977	NM_026385	ENSMUSG00000031775	Pllp	0610010I06Rik|AV001002|Plapi|Tm4sf11	plasma membrane proteolipid	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-36637933-2	chr16	36637833	36638033	+	668.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019388, intron 1 of 7)	L3|LINE|CR1	28144.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-14944195-2	chr2	14944095	14944295	+	655.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001309519, intron 2 of 12)	intron (NM_001309519, intron 2 of 12)	70539.0	NM_001309519	12296.0	Mm.313930	NM_023116	ENSMUSG00000057914	Cacnb2	AW060387|CAB2|Cavbeta2|Cchb2	calcium channel, voltage-dependent, beta 2 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-73225436-2	chr14	73225336	73225536	+	734.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_009029, intron 17 of 26)	intron (NM_009029, intron 17 of 26)	-12455.0	NM_175116	67168.0	Mm.390681	NM_175116	ENSMUSG00000033446	Lpar6	2610302I02Rik|P2ry5|P2y5	lysophosphatidic acid receptor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-30009105-4	chr16	30009015	30009215	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033631, intron 1 of 2)	CpG	448.0	NR_033631	100043102.0	Mm.30797	NR_033631	ENSMUSG00000097184	4632428C04Rik	Gm4231	RIKEN cDNA 4632428C04 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-133546503-1	chr3	133546403	133546603	+	613.0	f0_c57.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-2113.0	NM_001346736	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-45119992-4	chr17	45119903	45120103	+	935.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001357320)	TTS (NM_001357320)	-239118.0	NM_029257	75341.0	Mm.386821	NM_029257		4930564C03Rik	-	RIKEN cDNA 4930564C03 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-118795195-4	chr10	118795084	118795284	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	73719.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-111516314-5	chr10	111516131	111516331	+	913.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9945.0	NM_009344	21664.0	Mm.3117	NM_009344	ENSMUSG00000020205	Phlda1	DT1P1B11|TDAG51|Tdag	pleckstrin homology like domain, family A, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83665935-1	chr11	83665835	83666035	+	635.5	f0_c57.idr	Intergenic	Intergenic	3351.0	NM_013652	20303.0	Mm.244263	NM_013652	ENSMUSG00000018930	Ccl4	AT744.1|Act-2|MIP-1B|Mip1b|Scya4	chemokine (C-C motif) ligand 4	protein-coding	-0.0318536459303007	-0.148974333756391	-0.152946611023572	0.333225879908189	0.188422457255933	0.031866288910745	-0.152072694312031	-0.00425579826267494	0.0126533731119829	0.995242743725048	1
Merged-chr2-152789683-4	chr2	152789575	152789775	+	976.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009743, intron 2 of 2)	intron (NM_009743, intron 2 of 2)	35502.0	NM_053091	84682.0	Mm.196668	NM_053091	ENSMUSG00000009876	Cox4i2	Cox4b|CoxIV-2	cytochrome c oxidase subunit 4I2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-75732727-2	chr2	75732630	75732830	+	857.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-28067.0	NM_010902	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	0.942805381645661	0.395199381743267	0.383717708011002	0.374702281235581	1.32140764222062	0.397757284741701	0.386269346017466	1.5753290942611	2.2801960332737	0.220907453986935	0.712117798468663
Merged-chr19-11917939-2	chr19	11917838	11918038	+	585.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172635, intron 2 of 18)	B4A|SINE|B4	5539.0	NM_172635	225929.0	Mm.42711	NM_172635	ENSMUSG00000046139	Patl1	AV312086|Pat1b	protein associated with topoisomerase II homolog 1 (yeast)	protein-coding	-0.287862763944276	0.0684858021419858	-0.279368984079602	-0.282567716771255	0.344266352316084	-0.274274300320728	-0.278453296809324	0.0158408180952514	1.70197311180018	0.494432553559355	1
Merged-chr17-81712612-4	chr17	81712515	81712715	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 1 of 8)	intron (NR_104580, intron 1 of 8)	25772.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-118810482-2	chr10	118810382	118810582	+	859.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	58421.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-117868977-4	chr3	117868903	117869103	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029655)	promoter-TSS (NM_029655)	-67.0	NM_029655	76561.0	Mm.33824	NM_029655	ENSMUSG00000028007	Snx7	2510028H01Rik	sorting nexin 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-19925581-4	chr11	19925482	19925682	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033523, intron 1 of 5)	CpG	1140.0	NM_033523	114716.0	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-98834574-6	chr13	98834519	98834719	+	796.638916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19170.0	NM_172591	218503.0	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-110407302-2	chr9	110407202	110407402	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081043, intron 1 of 24)	intron (NM_001081043, intron 1 of 24)	908.0	NM_001081043	104831.0	Mm.335477	NM_001081043	ENSMUSG00000036057	Ptpn23	AI462446|PTP-TD14	protein tyrosine phosphatase, non-receptor type 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-145576235-4	chr3	145576128	145576328	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346521)	promoter-TSS (NM_001346521)	12.0	NM_001346521	229937.0	Mm.24586	NM_001081094	ENSMUSG00000074182	Znhit6	2410019A14Rik	zinc finger, HIT type 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-8817408-2	chr10	8817308	8817508	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 2 of 19)	(TG)n|Simple_repeat|Simple_repeat	68662.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36074981-2	chr1	36074881	36075081	+	622.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_015818, intron 1 of 1)	intron (NM_015818, intron 1 of 1)	6581.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-59209282-4	chr11	59209151	59209351	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024210, intron 4 of 6)	intron (NM_024210, intron 4 of 6)	890.0	NM_024210	67862.0	Mm.358708	NM_024210	ENSMUSG00000020441	2310033P09Rik	Mmtag2	RIKEN cDNA 2310033P09 gene	protein-coding	-0.802593673557486	-0.793094718163527	-0.341243695287107	-0.798614554876962	-0.802002397560642	-0.791090896558683	-0.332078011335404	-0.79819523297655	0.040958530317021	0.989184000390448	1
Merged-chr2-26467824-2	chr2	26467724	26467924	+	705.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008714, exon 26 of 34)	exon (NM_008714, exon 26 of 34)	2295.0	NR_105962	102465602.0		NR_105962	ENSMUSG00000098548	Mir6996	Gm27531|mmu-mir-6996	microRNA 6996	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-136247856-2	chr4	136247755	136247955	+	610.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011542)	promoter-TSS (NM_011542)	-102.0	NM_011542	21401.0	Mm.112	NM_011542	ENSMUSG00000001604	Tcea3	S-II|SII-K1	transcription elongation factor A (SII), 3	protein-coding	0.328960888549504	0.0801096395766421	0.251166330466473	0.785035152623549	0.0637574666241359	0.0813965035833356	0.0756588491671473	0.608538508004923	-1.09935785057106	0.594793958199525	1
Merged-chr2-152295892-2	chr2	152295792	152295992	+	613.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_024196, intron 1 of 7)	B1_Mur2|SINE|Alu	2020.0	NM_024196	67231.0	Mm.288733	NM_024196	ENSMUSG00000027465	Tbc1d20	1110028I04Rik|2810442O16Rik|AI414693|bs	TBC1 domain family, member 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-107490199-2	chr8	107490099	107490299	+	672.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025830, intron 6 of 23)	intron (NM_025830, intron 6 of 23)	53801.0	NM_025830	66894.0	Mm.390058	NM_025830	ENSMUSG00000031930	Wwp2	1300010O06Rik|AA690238|AIP2|AW554328	WW domain containing E3 ubiquitin protein ligase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-11966582-4	chr4	11966479	11966679	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040577)	promoter-TSS (NR_040577)	5.0	NR_040577	100503636.0	Mm.209078	NR_040577		1700123M08Rik	1600025K15Rik	RIKEN cDNA 1700123M08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31408038-4	chr14	31407938	31408138	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347585, intron 2 of 7)	intron (NM_001347585, intron 2 of 7)	9639.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122495811-2	chr8	122495711	122495911	+	807.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001357349, exon 20 of 51)	exon (NM_001357349, exon 20 of 51)	19668.0	NR_152823	66965.0	Mm.482288	NM_153775	ENSMUSG00000049482	Ctu2	2310061F22Rik|C16orf84|Ncs2	cytosolic thiouridylase subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91846617-4	chr16	91846498	91846698	+	935.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110275, intron 19 of 28)	intron (NM_001110275, intron 19 of 28)	85032.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-174471025-3	chr2	174470918	174471118	+	956.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025531, intron 1 of 5)	intron (NM_025531, intron 1 of 5)	1923.0	NM_025531	66390.0	Mm.182294	NM_025531	ENSMUSG00000016257	Prelid3b	2310042G06Rik|AA407013|Slmo2	PRELI domain containing 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-89392996-2	chr7	89392896	89393096	+	611.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360746, intron 1 of 14)	intron (NM_001360746, intron 1 of 14)	11226.0	NM_001360746	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-93545593-2	chr9	93545493	93545693	+	565.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3A|LINE|L1	-539860.0	NR_040756	78349.0	Mm.52612	NR_040756	ENSMUSG00000100294	1700034K08Rik	-	RIKEN cDNA 1700034K08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-173802943-3	chr1	173802846	173803046	+	744.611145	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36027.0	NM_008329	15951.0	Mm.261270	NM_008329	ENSMUSG00000073489	Ifi204	Ifi16|p204	interferon activated gene 204	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-41368450-4	chr4	41368370	41368570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355508, intron 2 of 6)	intron (NM_001355508, intron 2 of 6)	16507.0	NM_001355508	67123.0	Mm.289795	NM_023305	ENSMUSG00000028437	Ubap1	2700092A01Rik|NAG20|UBAP-1|Ubap	ubiquitin-associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-51920605-4	chr15	51920497	51920697	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43156.0	NM_030132	78581.0	Mm.176347	NM_030132	ENSMUSG00000022313	Utp23	1700010I21Rik|AI662478|BB238373|D530033C11Rik	UTP23 small subunit processome component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-34338034-2	chr5	34337934	34338134	+	734.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001304270, intron 1 of 7)	intron (NM_001304270, intron 1 of 7)	1102.0	NM_001304270	19822.0	Mm.21281	NM_011278	ENSMUSG00000029110	Rnf4	AU018689|Gtrgeo8|SNURF	ring finger protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-38091956-4	chr16	38091832	38092032	+	899.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347232, intron 1 of 11)	intron (NM_001347232, intron 1 of 11)	-2672.0	NR_033221	414072.0	Mm.483602	NR_033221		BC031361	-	cDNA sequence BC031361	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-34309568-2	chr11	34309461	34309661	+	702.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_033374, intron 29 of 51)	intron (NM_033374, intron 29 of 51)	-5261.0	NM_001025382	574403.0	Mm.444796	NM_001025382	ENSMUSG00000069911	Fam196b	EG574403|Gm6041	family with sequence similarity 196, member B	protein-coding	1.23602152745591	0.578808058152756	0.569337763575499	1.01777278141432	0.551525084726032	1.11200070578887	0.76482463318494	1.33359392278864	0.430350340942362	0.79036522301721	0.998431161219273
Merged-chr19-32792817-1	chr19	32792717	32792917	+	701.333313	f0_balb.idr	intron (NM_008960, intron 3 of 8)	intron (NM_008960, intron 3 of 8)	35240.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-120188139-2	chr10	120188039	120188239	+	556.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359184, intron 1 of 11)	intron (NM_001359184, intron 1 of 11)	13458.0	NM_028679	73914.0	Mm.146194	NM_028679	ENSMUSG00000020227	Irak3	4833428C18Rik|AI563835|IRAK-M	interleukin-1 receptor-associated kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-192745218-4	chr1	192745086	192745286	+	846.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144881, intron 3 of 11)	intron (NM_144881, intron 3 of 11)	26033.0	NM_144881	226861.0	Mm.145857	NM_144881	ENSMUSG00000037375	Hhat	2810432O22Rik|AI462858|AP-2CRE|Skn|Tg(TFAP2A-cre)1Will	hedgehog acyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-82652625-4	chr6	82652519	82652719	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025882, intron 1 of 3)	CpG	246.0	NM_025882	66979.0	Mm.195753	NM_025882	ENSMUSG00000030042	Pole4	2400007P05Rik|5830430F06Rik	polymerase (DNA-directed), epsilon 4 (p12 subunit)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-73062490-2	chr2	73062390	73062590	+	554.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-82044.0	NM_001018042	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120041042-3	chr8	120040948	120041148	+	940.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310635, intron 14 of 14)	intron (NM_001310635, intron 14 of 14)	48610.0	NM_001310635	78892.0	Mm.264680	NM_030209	ENSMUSG00000031825	Crispld2	1810049K24Rik|Lcrisp2|Lgl1|coffeecrisp	cysteine-rich secretory protein LCCL domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-82261770-4	chr12	82261678	82261878	+	954.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167983, intron 2 of 23)	intron (NM_001167983, intron 2 of 23)	-49571.0	NM_172579	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-84820457-4	chr3	84820366	84820566	+	904.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177773, intron 1 of 13)	MER58A|DNA|hAT-Charlie	4889.0	NM_001177773	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-96713325-4	chr9	96713238	96713438	+	856.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359959, intron 2 of 2)	intron (NM_001359959, intron 2 of 2)	6107.0	NM_001359960	245007.0	Mm.485954	NM_175537	ENSMUSG00000040433	Zbtb38	A930014K01Rik|CIBZ	zinc finger and BTB domain containing 38	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100009934-2	chr7	100009834	100010034	+	806.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291320)	promoter-TSS (NM_001291320)	16.0	NM_001291320	69121.0	Mm.285295	NM_133709	ENSMUSG00000030732	Chrdl2	1810022C01Rik|Chl2	chordin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-148473795-2	chr6	148473695	148473895	+	654.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29443.0	NM_001347518	387314.0	Mm.137858	NM_198967	ENSMUSG00000030306	Tmtc1	Arg99|BC023818	transmembrane and tetratricopeptide repeat containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-79239382-4	chr3	79239287	79239487	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045502, intron 1 of 2)	intron (NR_045502, intron 1 of 2)	26468.0	NR_045502	70924.0	Mm.444622	NR_045502	ENSMUSG00000104585	4921511C10Rik	-	RIKEN cDNA 4921511C10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3942419-3	chr19	3942326	3942526	+	728.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001161428, exon 6 of 10)	exon (NM_001161428, exon 6 of 10)	7240.0	NM_001161428	54445.0	Mm.262094	NM_019449	ENSMUSG00000036908	Unc93b1	Unc-93B1|Unc93b	unc-93 homolog B1 (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-111047466-4	chr9	111047360	111047560	+	995.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9784.0	NM_001302377	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91723561-4	chr2	91723468	91723668	+	910.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6570.0	NM_172669	228361.0	Mm.436667	NM_172669	ENSMUSG00000040506	Ambra1	2310079H06Rik|A130023A14|AA474864|AV021921|D030051N19Rik|mKIAA1736	autophagy/beclin 1 regulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118679038-4	chr9	118678943	118679143	+	994.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 11 of 27)	MTD|LTR|ERVL-MaLR	-32649.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	2.5778804705016	3.98489484211809	3.68665928148222	3.05531728631309	2.91844793044978	3.70111069788675	2.37273497575456	2.46150392687169	-0.743878480432521	0.273978942322528	0.777973970492038
Merged-chr18-32399741-4	chr18	32399629	32399829	+	764.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360876, intron 1 of 17)	intron (NM_001360876, intron 1 of 17)	-21445.0	NR_045403	402767.0	Mm.385109	NR_045403	ENSMUSG00000097413	A830052D11Rik	-	RIKEN cDNA A830052D11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59662812-3	chr15	59662740	59662940	+	737.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14186.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-12463899-4	chr19	12463805	12464005	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010821, exon 2 of 2)	3' UTR (NM_010821, exon 2 of 2)	3126.0	NM_010821	17476.0	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	5.27543663767563	4.96364835617756	4.40179309376981	5.06455377910942	5.64227996280099	4.99680657735915	5.01139175044385	4.9843801733307	0.270851455201777	0.420794214857238	0.900322118218157
Merged-chr7-99091404-4	chr7	99091314	99091514	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 4 of 14)	intron (NM_178635, intron 4 of 14)	49730.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-117182562-3	chr5	117182497	117182697	+	719.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081308, intron 1 of 19)	L1MB7|LINE|L1	49009.0	NM_183306	330177.0	Mm.24343	NM_183306	ENSMUSG00000061288	Taok3	2900006A08Rik|A130052D22|A430105I05Rik	TAO kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-86100869-4	chr5	86100803	86101003	+	944.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310639, intron 7 of 7)	intron (NM_001310639, intron 7 of 7)	29157.0	NM_001310639	56792.0	Mm.131237	NM_019992	ENSMUSG00000029254	Stap1	AI586015|Brdg1|STAP-1	signal transducing adaptor family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-21954931-4	chr6	21954826	21955026	+	995.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311061, intron 4 of 11)	MTD|LTR|ERVL-MaLR	5311.0	NM_023626	71777.0	Mm.39999	NM_023626	ENSMUSG00000029670	Ing3	1300013A07Rik|P47ING3	inhibitor of growth family, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-43805357-1	chr13	43805257	43805457	+	549.0	f1_balb.idr	Intergenic	Intergenic	20245.0	NM_001289915	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125230218-2	chr6	125230118	125230318	+	801.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_145391, exon 3 of 7)	exon (NM_145391, exon 3 of 7)	-1058.0	NR_015604	78668.0	Mm.10626	NR_015604	ENSMUSG00000030337	E130112N10Rik	5830448L21Rik|9530059J11Rik	RIKEN cDNA E130112N10 gene	ncRNA	1.01847657446437	1.30716631822336	0.511080956873442	0.503383003412433	1.02990330518751	1.3205781386575	0.513271090682099	0.504731991526003	0.040323094449747	0.981368665632359	0.998431161219273
Merged-chr5-99325995-4	chr5	99325901	99326101	+	992.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-73074.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-68659471-2	chr11	68659371	68659571	+	602.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-32444.0	NM_175260	77579.0	Mm.218233	NM_175260	ENSMUSG00000020900	Myh10	5730504C04Rik|9330167F11Rik|Fltn|Myhn-2|Myhn2|NMHC II-B|NMHC-B|NMHCII-B|NMMHC II-b|NMMHC-B|NMMHC-IIB|SMemb|mKIAA3005	myosin, heavy polypeptide 10, non-muscle	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-80896843-2	chr15	80896743	80896943	+	582.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177124, intron 11 of 21)	intron (NM_177124, intron 11 of 21)	-43196.0	NR_039573	100628612.0		NR_039573	ENSMUSG00000092868	Mir5113	mir-5113|mmu-mir-5113|mu-mir-5113	microRNA 5113	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-46793077-4	chr11	46792983	46793183	+	953.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC5|LINE|L1	-17716.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16405762-1	chr7	16405662	16405862	+	1000.0	f0_balb.idr	intron (NM_198631, intron 1 of 13)	intron (NM_198631, intron 1 of 13)	4566.0	NM_198631	330474.0	Mm.333594	NM_198631	ENSMUSG00000059273	Zc3h4	Bwq1|Gm768|Kiaa1064-hp|mKIAA1064	zinc finger CCCH-type containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-8953210-4	chr19	8953124	8953324	+	904.866699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_197993)	promoter-TSS (NM_197993)	-608.0	NM_197993	70044.0	Mm.165979	NM_197993	ENSMUSG00000071645	Tut1	2700038E08Rik|PAPD2|Rbm21|TUTase6|U6-TUTase|star-PAP	terminal uridylyl transferase 1, U6 snRNA-specific	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-45473339-4	chr4	45473236	45473436	+	966.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033306, intron 2 of 5)	intron (NM_001033306, intron 2 of 5)	57492.0	NM_001033306	230126.0	Mm.251716	NM_001033306	ENSMUSG00000044813	Shb	BC028832	src homology 2 domain-containing transforming protein B	protein-coding	2.44983475075985	2.5082490460169	1.46627481596747	2.68196355074293	2.25154032508119	3.22183275832125	2.56685132056075	2.87159974932917	0.850738343137832	0.299124093033621	0.800409222377854
Merged-chr16-68785185-2	chr16	68785085	68785285	+	694.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus4|LINE|L1	1015196.0	NR_130991	78110.0	Mm.211406	NR_130991	ENSMUSG00000107073	4930428D20Rik	Gm43265	RIKEN cDNA 4930428D20 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85599706-4	chr12	85599599	85599799	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001205053)	promoter-TSS (NM_001205053)	283.0	NM_030887	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-73509272-3	chr14	73509189	73509389	+	652.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026119)	promoter-TSS (NM_026119)	-760.0	NM_026119	67381.0	Mm.282888	NM_026119	ENSMUSG00000022109	Med4	2410046H15Rik|DRIP36|HSPC126|TRAP36|Vdirp|Vdrip	mediator complex subunit 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-154031047-3	chr1	154030945	154031145	+	861.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	131116.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-75924934-3	chr18	75924845	75925045	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145356, intron 2 of 4)	intron (NM_145356, intron 2 of 4)	104767.0	NM_145356	207259.0	Mm.159332	NM_145356	ENSMUSG00000044646	Zbtb7c	B230208J24Rik|Kr-pok|Zbtb36	zinc finger and BTB domain containing 7C	protein-coding	2.42175825923987	1.59253932465186	2.32157688848798	2.41762611244339	1.01647976799563	1.10537840251314	1.07779100994289	2.26264824042247	-1.92803688671215	0.103446385767889	0.500914100336688
Merged-chr11-50841583-4	chr11	50841496	50841696	+	991.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290779)	promoter-TSS (NM_001290779)	-44.0	NM_173387	214779.0	Mm.191846	NM_173387	ENSMUSG00000044296	Zfp879	Znf879	zinc finger protein 879	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-90187672-4	chr16	90187569	90187769	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33073.0	NM_011434	20655.0	Mm.276325	NM_011434	ENSMUSG00000022982	Sod1	B430204E11Rik|Cu/Zn-SOD|CuZnSOD|Ipo-1|Ipo1|SODC|Sod-1	superoxide dismutase 1, soluble	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-103061629-2	chr14	103061529	103061729	+	629.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8587.0	NM_001033242	211286.0	Mm.295289	NM_001033242	ENSMUSG00000022125	Cln5	A730075N08Rik	ceroid-lipofuscinosis, neuronal 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-42343974-2	chr6	42343874	42344074	+	926.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5854.0	NM_001289619	22793.0	Mm.282303	NM_011777	ENSMUSG00000029860	Zyx	9530098H06Rik|R75157	zyxin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102442036-2	chr12	102441936	102442136	+	977.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2223.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98342764-4	chr11	98342668	98342868	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5638.0	NM_144828	19049.0	Mm.45372	NM_144828	ENSMUSG00000061718	Ppp1r1b	AU040756|DARPP-32|Darpp32	protein phosphatase 1, regulatory (inhibitor) subunit 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-88543076-4	chr5	88542967	88543167	+	831.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-11395.0	NM_023054	65961.0	Mm.490364	NM_023054	ENSMUSG00000070697	Utp3	2400011K09Rik|AW557551|C87704|Crl-1|Crl1|Crlz1|Sas10	UTP3 small subunit processome component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-30861225-2	chr16	30861125	30861325	+	666.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	220207.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-13611018-3	chr3	13610925	13611125	+	659.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040598, intron 3 of 3)	intron (NR_040598, intron 3 of 3)	41840.0	NR_040598	75203.0	Mm.490940	NR_040598		4930539N22Rik	-	RIKEN cDNA 4930539N22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-145272223-2	chr7	145272201	145272401	+	787.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_132642, exon 7 of 24)	non-coding (NR_132642, exon 7 of 24)	11710.0	NR_132644	233979.0	Mm.102235	NM_146206	ENSMUSG00000048677	Tpcn2	D830047E22Rik|Gm35086	two pore segment channel 2	protein-coding	-0.128855886660263	-0.112179463574555	-0.117627428775005	0.52818499039226	0.0248470299574758	-0.110953375809632	-0.116424595491894	0.626449216209677	0.480849412410878	0.835250912840176	1
Merged-chr17-25920042-4	chr17	25919946	25920146	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_139154)	promoter-TSS (NM_139154)	-332.0	NM_139154	224624.0	Mm.328872	NM_139154	ENSMUSG00000025730	Rab40c	RAR3	Rab40C, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-62187081-4	chr10	62186998	62187198	+	934.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_197996, exon 8 of 8)	3' UTR (NM_197996, exon 8 of 8)	7129.0	NR_106122	102465767.0		NR_106122	ENSMUSG00000099185	Mir7662	Gm27876|mmu-mir-7662	microRNA 7662	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55113464-2	chr14	55113364	55113564	+	880.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_177049, exon 3 of 6)	exon (NM_177049, exon 3 of 6)	3471.0	NM_177049	319984.0	Mm.19047	NM_177049	ENSMUSG00000022208	Jph4	9330157P13Rik|JP-4|JPHL1	junctophilin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135262996-2	chr4	135262896	135263096	+	581.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013885, intron 1 of 5)	RSINE1|SINE|B4	9764.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-75985247-4	chr2	75985124	75985324	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3257.0	NM_030188	78802.0	Mm.282339	NM_030188	ENSMUSG00000075271	Ttc30a1	4930506L13Rik	tetratricopeptide repeat domain 30A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-118798384-4	chr7	118798239	118798439	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027815, intron 19 of 30)	RSINE1|SINE|B4	57274.0	NM_001168220	66356.0	Mm.482278	NM_023197	ENSMUSG00000030980	Knop1	2310008H09Rik|Tsg118	lysine rich nucleolar protein 1	protein-coding	0.692327227839293	0.637723535546329	1.02249903854292	0.419449818338442	0.816122814943662	0.436089039952273	0.427742901280952	1.26535938767044	0.425592987817451	0.802534021761302	1
Merged-chr3-137947733-4	chr3	137947653	137947853	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011932, intron 4 of 8)	intron (NM_011932, intron 4 of 8)	29198.0	NM_019920	56692.0	Mm.331392	NM_019920	ENSMUSG00000091512	Lamtor3	AW556229|Map2k1ip1|Mapbp|Mapksp1|Mp1	late endosomal/lysosomal adaptor, MAPK and MTOR activator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30693880-2	chr2	30693780	30693980	+	856.083374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15869.0	NR_136917	665635.0	Mm.450149	NR_136917		Gm14486	-	predicted gene 14486	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99546404-4	chr7	99546322	99546522	+	935.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178220, intron 1 of 14)	intron (NM_178220, intron 1 of 14)	-5847.0	NR_029760	723840.0		NR_029760	ENSMUSG00000065571	Mir326	Mirn326|mir-326|mmu-mir-326	microRNA 326	ncRNA	1.61197291724507	0.934905266629251	1.76636535273533	1.59110707788027	1.62698332307954	0.939254341149892	2.32321090627843	0.902419359152722	0.285786469640852	0.828635284265683	0.998431161219273
Merged-chr5-103835911-2	chr5	103835811	103836011	+	809.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133919, intron 11 of 19)	intron (NM_133919, intron 11 of 19)	75348.0	NM_001359987	246293.0	Mm.179871	NM_178741	ENSMUSG00000029312	Klhl8	2310001P09Rik|D5Ertd431e	kelch-like 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-45477469-4	chr13	45477347	45477547	+	786.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29997.0	NM_025508	66355.0	Mm.290802	NM_025508	ENSMUSG00000000253	Gmpr	2310004P21Rik|AV028449|GMPR 1	guanosine monophosphate reductase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-76224803-4	chr16	76224709	76224909	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	102196.0	NR_040575	78215.0	Mm.243885	NR_040575		4930578N18Rik	-	RIKEN cDNA 4930578N18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-79636170-1	chr8	79636070	79636270	+	545.0	f1_balb.idr	Intergenic	Intergenic	-3506.0	NM_001256033	73945.0	Mm.34348	NM_001081164	ENSMUSG00000036990	Otud4	4930431L18Rik|AI449692|D8Ertd69e|mKIAA1046	OTU domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-110706396-4	chr12	110706291	110706491	+	826.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-9996.0	NM_010480	15519.0	Mm.1843	NM_010480	ENSMUSG00000021270	Hsp90aa1	86kDa|89kDa|AL024080|AL024147|Hsp86-1|Hsp89|Hsp90|Hspca|hsp4	heat shock protein 90, alpha (cytosolic), class A member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-80987321-2	chr18	80987221	80987421	+	723.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178280)	promoter-TSS (NM_178280)	-743.0	NM_178280	20689.0	Mm.215917	NM_178280	ENSMUSG00000024565	Sall3	B130022O04Rik|Msal|Msal-1|Sal|Salt|Spalt	spalt like transcription factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-108669238-4	chr5	108669147	108669347	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_174870)	TTS (NM_174870)	5549.0	NM_001310692	231583.0	Mm.440571	NM_174870	ENSMUSG00000046959	Slc26a1	Sat1	solute carrier family 26 (sulfate transporter), member 1	protein-coding	6.08663724135842	6.76501090556651	5.68981047412121	6.41243408573658	6.35992160835678	6.60848122450167	6.42407551066331	6.82111257583501	0.296858922388836	0.216796259986249	0.707538695710375
Merged-chr17-28019894-2	chr17	28019794	28019994	+	568.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_181413, intron 12 of 24)	intron (NM_181413, intron 12 of 24)	60690.0	NM_001357681	21463.0	Mm.29758	NM_013687	ENSMUSG00000062859	Tcp11	D17Ken1|Tcp-11	t-complex protein 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-105109825-2	chr5	105109725	105109925	+	789.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172777, intron 1 of 10)	intron (NM_172777, intron 1 of 10)	467.0	NR_153378	236573.0	Mm.425261	NM_172777	ENSMUSG00000029298	Gbp9	-	guanylate-binding protein 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-94934255-2	chr8	94934155	94934355	+	871.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033468, intron 4 of 11)	intron (NM_001033468, intron 4 of 11)	10561.0	NM_001145972	382045.0	Mm.334726	NM_001033468	ENSMUSG00000061577	Adgrg5	Gm1109|Gpr114|PGR27	adhesion G protein-coupled receptor G5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-69041526-1	chr3	69041426	69041626	+	544.0	f1_c57bl6.idr	intron (NM_025863, intron 2 of 2)	intron (NM_025863, intron 2 of 2)	3216.0	NM_025863	66949.0	Mm.176695	NM_025863	ENSMUSG00000034317	Trim59	2310035M22Rik|2700022F13Rik|Mrf1|TSBF1	tripartite motif-containing 59	protein-coding	1.69113477963602	2.01043092480354	1.82631235315759	1.88840038279244	1.70420153829124	1.17944390117947	1.70753726475985	1.89798180851911	-0.636952965139187	0.543999481195498	0.955588703284868
Merged-chr17-69384030-11	chr17	69383933	69384133	+	999.4545289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_009547, exon 1 of 3)	5' UTR (NM_009547, exon 1 of 3)	229.0	NM_009547	22666.0	Mm.29434	NM_009547	ENSMUSG00000049672	Zbtb14	ZF5|Zfp161|b2b1982Clo	zinc finger and BTB domain containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-160058345-4	chr2	160058245	160058445	+	931.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	41692.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-48043429-4	chr4	48043253	48043453	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1952.0	NM_015743	18124.0	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-14941296-2	chr8	14941181	14941381	+	755.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037736, intron 8 of 27)	intron (NM_001037736, intron 8 of 27)	29618.0	NM_001037736	234094.0	Mm.240298	NM_172751	ENSMUSG00000071176	Arhgef10	6430549H08Rik|mKIAA0294	Rho guanine nucleotide exchange factor (GEF) 10	protein-coding	-0.826079301973014	-0.815976911389005	-0.48856768288447	-0.822034307155513	-0.825477939972824	-0.813140593568297	-0.233450949098413	-0.821608315586778	1.01638391311071	0.737217197678661	1
Merged-chr11-118449250-4	chr11	118449117	118449317	+	875.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001204129, exon 4 of 4)	3' UTR (NM_001204129, exon 4 of 4)	5683.0	NM_001204130	56745.0	Mm.23845	NM_019959	ENSMUSG00000017446	C1qtnf1	1600017K21Rik|CTRP1|Zsig37	C1q and tumor necrosis factor related protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119355471-4	chr11	119355378	119355578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018822)	promoter-TSS (NM_018822)	32.0	NM_018822	27029.0	Mm.103788	NM_018822	ENSMUSG00000005043	Sgsh	4632406A19Rik	N-sulfoglucosamine sulfohydrolase (sulfamidase)	protein-coding	4.70790156714444	4.8144666372387	4.47687140830304	4.71400768008222	4.12697866824301	3.80603049338429	5.01639206565431	4.37966947989195	-0.345017009379242	0.384240626435115	0.875228269073884
Merged-chr14-75136857-4	chr14	75136756	75136956	+	924.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008879, intron 1 of 16)	intron (NM_008879, intron 1 of 16)	431.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-59770960-2	chr13	59770860	59771060	+	742.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_153538)	TTS (NM_153538)	994.0	NR_015349	13996.0	Mm.490435	NR_015349		Etohd2	AW491659	ethanol decreased 2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91196918-4	chr2	91196807	91197007	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1791.0	NM_001177730	22259.0	Mm.22690	NM_013839	ENSMUSG00000002108	Nr1h3	AU018371|LXR|RLD1|Unr1	nuclear receptor subfamily 1, group H, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-81109111-3	chr13	81109011	81109211	+	874.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 87 of 89)	intron (NM_054053, intron 87 of 89)	145037.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-32118311-2	chr17	32118211	32118411	+	922.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26888.0	NR_027316	435518.0	Mm.328944	NR_027316	ENSMUSG00000002791	Pdxk-ps	Gm9743	pyridoxal (pyridoxine, vitamin B6) kinase, pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-110619891-4	chr8	110619790	110619990	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151675, intron 1 of 17)	MER3|DNA|hAT-Charlie	1323.0	NR_151675	234729.0	Mm.274894	NM_146216	ENSMUSG00000010936	Vac14	AA959718|BC032215|D8Wsu151e|Tax1bp2|Trx|ingls	Vac14 homolog (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85649128-2	chr12	85649028	85649228	+	867.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37592.0	NM_016767	53314.0	Mm.6672	NM_016767	ENSMUSG00000034266	Batf	B-ATF|SFA-2	basic leucine zipper transcription factor, ATF-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-79497710-2	chr14	79497610	79497810	+	596.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007920, intron 1 of 8)	ID_B1|SINE|B4	-16442.0	NM_018765	22380.0	Mm.476813	NM_018765	ENSMUSG00000022023	Wbp4	AW545037|BB101031|FBP21	WW domain binding protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-92967536-2	chr7	92967436	92967636	+	695.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	92283.0	NM_028243	72461.0	Mm.389969	NM_028243	ENSMUSG00000061119	Prcp	2510048K03Rik|2610104A14Rik|AI451719|HUMPCP|PCP	prolylcarboxypeptidase (angiotensinase C)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83020867-4	chr11	83020785	83020985	+	963.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001167743)	promoter-TSS (NM_001167743)	-75.0	NM_181545	276950.0	Mm.491599	NM_181545	ENSMUSG00000035208	Slfn8	-	schlafen 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36072110-4	chr1	36072018	36072218	+	991.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015818, intron 1 of 1)	intron (NM_015818, intron 1 of 1)	3718.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-121790821-2	chr11	121790721	121790921	+	800.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39397.0	NM_029049	74675.0	Mm.61213	NM_029049	ENSMUSG00000039198	Ptchd3	4930451E13Rik|4933440L20Rik|RNDEu-3	patched domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45158361-2	chr7	45158258	45158458	+	923.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285904, intron 4 of 9)	intron (NM_001285904, intron 4 of 9)	2412.0	NM_001285904	68845.0	Mm.181689	NM_029406	ENSMUSG00000003423	Pih1d1	1110061L23Rik|4933413A04Rik|Nop17	PIH1 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-83016209-3	chr15	83016108	83016308	+	957.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028728, intron 2 of 5)	intron (NM_028728, intron 2 of 5)	6930.0	NM_028728	74039.0	Mm.32584	NM_028728	ENSMUSG00000058099	Nfam1	4921501M20Rik|Cnaip	Nfat activating molecule with ITAM motif 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44767328-1	chr9	44767228	44767428	+	1000.0	f0_balb.idr	intron (NM_145985, intron 1 of 9)	CpG	480.0	NM_145985	213827.0	Mm.371682	NM_145985	ENSMUSG00000032096	Arcn1	4632432M07Rik|nur17	archain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-116907406-1	chr2	116907306	116907506	+	566.0	f0_balb.idr	intron (NR_040335, intron 2 of 3)	MTD|LTR|ERVL-MaLR	7254.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-15243898-7	chr3	15243796	15243996	+	999.5714109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	88406.0	NM_001076679	751864.0	Mm.431296	NM_001076679	ENSMUSG00000078783	Gm9733	-	predicted gene 9733	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-157501547-4	chr2	157501440	157501640	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58538.0	NM_001291129	18111.0	Mm.34330	NM_010923	ENSMUSG00000067786	Nnat	5730414I02Rik|AW107673|Peg5	neuronatin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180421777-2	chr1	180421677	180421877	+	818.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081175, exon 8 of 8)	exon (NM_001081175, exon 8 of 8)	61727.0	NM_001081227	381310.0	Mm.44791	NM_001081227	ENSMUSG00000053963	Stum	6330403A02Rik|Gm10001|R75555	mechanosensory transduction mediator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71264952-4	chr17	71264822	71265022	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357338, intron 4 of 7)	intron (NM_001357338, intron 4 of 7)	46089.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	5.00473050845181	5.63406066989103	6.02395146706508	5.36643668142644	5.77636519446107	5.88908721972963	6.40880989602972	5.91259871755589	0.522112998010213	0.0646727970040223	0.380364812967774
Merged-chr1-144243171-2	chr1	144243071	144243271	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5933.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-55096427-3	chr10	55096363	55096563	+	867.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1010454.0	NM_001163833	73390.0	Mm.181475	NM_133751	ENSMUSG00000047669	Msl3l2	1700060H10Rik	MSL3 like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-30916266-4	chr5	30916146	30916346	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133918, intron 3 of 7)	intron (NM_133918, intron 3 of 7)	2460.0	NM_133918	100952.0	Mm.286375	NM_133918	ENSMUSG00000029163	Emilin1	5830419M17Rik|AW229038|BB105748|EMILIN-1|gp115	elastin microfibril interfacer 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-104176111-4	chr8	104176030	104176230	+	975.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001141925, intron 1 of 4)	intron (NM_001141925, intron 1 of 4)	5617.0	NM_001141925	65115.0	Mm.41849	NM_001141922	ENSMUSG00000031872	Bean1	Bean	brain expressed, associated with Nedd4, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-52993408-4	chr2	52993318	52993518	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	135550.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-122149446-2	chr10	122149346	122149546	+	603.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29749.0	NR_027637	100043513.0	Mm.429141	NR_027637	ENSMUSG00000111952	Gm4489	Gm241	predicted gene 4489	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166080652-2	chr2	166080552	166080752	+	815.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252579, intron 14 of 20)	intron (NM_001252579, intron 14 of 20)	74633.0	NM_001355619	72043.0	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	-1.50561175621786	-1.47331375025452	-1.02203377115094	-1.49110398925286	-1.50334449591826	-1.47119716082604	-1.48086985756939	-1.48966786617048	-2.07776723614574	0.550394407909386	1
Merged-chr16-87594289-3	chr16	87594195	87594395	+	891.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_144854, exon 5 of 5)	exon (NM_144854, exon 5 of 5)	40965.0	NM_144854	224419.0	Mm.194466	NM_144854	ENSMUSG00000025610	Map3k7cl	C21orf7|ORF63|Tak1l	Map3k7 C-terminal like	protein-coding	0.264936439107358	0.0183433332240031	0.674446004664633	0.00891990303962212	0.147366607175582	0.0195431524020113	0.0141959604582848	0.541719375022784	-0.526742420981712	0.802417169099508	1
Merged-chr15-79756556-3	chr15	79756455	79756655	+	798.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045069, exon 4 of 4)	non-coding (NR_045069, exon 4 of 4)	13857.0	NR_045069	100504191.0	Mm.421420	NR_045069	ENSMUSG00000087543	Gm16576	-	predicted gene 16576	ncRNA	0.928157200730303	1.47280302625225	2.08135587113358	1.68164967594953	0.932937912782616	1.95300492945973	1.23074713255207	2.42182460049825	0.481541588027343	0.697878285459976	0.998087997318924
Merged-chr5-64764621-3	chr5	64764516	64764716	+	743.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38907.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-24514790-2	chr9	24514690	24514890	+	809.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11650.0	NM_172920	244745.0	Mm.38526	NM_172920	ENSMUSG00000043067	Dpy19l1	1100001I19Rik|6030402K12|AI225861|AW558481	dpy-19-like 1 (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-148677166-2	chr4	148677066	148677266	+	690.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33849.0	NM_001085505	230909.0	Mm.332067	NM_001085505	ENSMUSG00000070577	Gm572	b2b1167Clo	predicted gene 572	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25107846-2	chr7	25107746	25107946	+	644.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163556, intron 5 of 13)	intron (NM_001163556, intron 5 of 13)	-10671.0	NR_105855	102465968.0		NR_105855	ENSMUSG00000098441	Mir6537	Gm27808|mmu-mir-6537	microRNA 6537	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-103026383-3	chr3	103026291	103026491	+	891.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310693, intron 1 of 17)	B2_Mm2|SINE|B2	5845.0	NM_144901	229663.0	Mm.277713	NM_144901	ENSMUSG00000068823	Csde1	AA960392|BC016898|D3Jfr1|mKIAA0885|unr	cold shock domain containing E1, RNA binding	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-113782818-4	chr9	113782719	113782919	+	930.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114347, intron 6 of 39)	L1MB8|LINE|L1	-10511.0	NM_001286603	76499.0	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80623735-4	chr10	80623646	80623846	+	930.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134002, intron 1 of 10)	intron (NM_134002, intron 1 of 10)	966.0	NM_134002	103236.0	Mm.29873	NM_134002	ENSMUSG00000003345	Csnk1g2	2810429I12Rik|AI463719	casein kinase 1, gamma 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-57572322-2	chr16	57572222	57572422	+	729.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001177871, exon 2 of 2)	exon (NM_001177871, exon 2 of 2)	23080.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97312802-1	chr11	97312702	97312902	+	575.0	f1_balb.idr	Intergenic	Intergenic	-2914.0	NM_025927	67036.0	Mm.5381	NM_025927	ENSMUSG00000018882	Mrpl45	2600005P05Rik|AU043542|R75241	mitochondrial ribosomal protein L45	protein-coding	-1.18818405238703	-1.1621273909064	-1.17340543805306	-1.18266956177369	-0.508992984534732	-1.15968339104222	-1.17085233538681	-1.18101128805699	2.76775479490304	0.421927342186551	1
Merged-chr6-124911735-3	chr6	124911654	124911854	+	738.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008479)	promoter-TSS (NM_008479)	-49.0	NM_008479	16768.0	Mm.4528	NM_008479	ENSMUSG00000030124	Lag3	CD223|LAG-3|Ly66	lymphocyte-activation gene 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-44990656-3	chr14	44990540	44990740	+	674.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008964, intron 1 of 1)	intron (NM_008964, intron 1 of 1)	2529.0	NM_008964	19217.0	Mm.4630	NM_008964	ENSMUSG00000037759	Ptger2	EP2|Ptgerep2	prostaglandin E receptor 2 (subtype EP2)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-37740818-2	chr13	37740718	37740918	+	645.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-85220.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-65726071-2	chr17	65725971	65726171	+	931.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133685, intron 1 of 6)	intron (NM_133685, intron 1 of 6)	46681.0	NM_133685	106572.0	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-42328739-4	chr13	42328641	42328841	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27265.0	NM_010104	13614.0	Mm.14543	NM_010104	ENSMUSG00000021367	Edn1	ET-1|PPET1|preproET	endothelin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-87386090-4	chr12	87386046	87386246	+	877.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011479, intron 1 of 11)	intron (NM_011479, intron 1 of 11)	2209.0	NM_011479	20773.0	Mm.565	NM_011479	ENSMUSG00000021036	Sptlc2	LCB2|LCB2a|Spt2	serine palmitoyltransferase, long chain base subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-73538063-2	chr18	73537963	73538163	+	734.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34642.0	NM_001039214	240396.0	Mm.24131	NM_001039214	ENSMUSG00000037253	Mex3c	A130001D14Rik|BC035207|BM-013|Rkhd2	mex3 RNA binding family member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-51098484-3	chr14	51098384	51098584	+	810.833313	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	intron (NM_201239, intron 1 of 1)	intron (NM_201239, intron 1 of 1)	2484.0	NM_201239	58809.0	Mm.202665	NM_021472	ENSMUSG00000021876	Rnase4	C730049F20Rik|Rab1	ribonuclease, RNase A family 4	protein-coding	3.2617761449102	4.18626546340011	4.00235288320839	3.58876047667923	2.82493319072208	2.58008142352327	4.03153641843989	2.97932681617882	-0.852684593117689	0.152344614223884	0.605910723135302
Merged-chr6-47648049-2	chr6	47647949	47648149	+	798.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7045.0	NR_002841	19799.0		NR_002841		Rn4.5s	-	4.5S RNA	rRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102460292-2	chr12	102460197	102460397	+	985.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8837.0	NM_001199004	27277.0	Mm.273370	NM_013747	ENSMUSG00000021192	Golga5	Ret-II	golgi autoantigen, golgin subfamily a, 5	protein-coding	-2.05752322593321	-2.15521190974092	-2.16307242109104	-2.16952927915413	-2.17938029103484	-2.15350850414045	-2.16129297361887	-2.16837350464794	-0.683654500252594	0.846597994014493	1
Merged-chr8-53607274-4	chr8	53607207	53607407	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146208, intron 5 of 9)	intron (NM_146208, intron 5 of 9)	31758.0	NM_146208	234258.0	Mm.281749	NM_146208	ENSMUSG00000039396	Neil3	AI449477|BC034753|C85903	nei like 3 (E. coli)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-109954124-1	chr2	109954024	109954224	+	604.0	f0_c57.idr	intron (NM_172671, intron 1 of 17)	intron (NM_172671, intron 1 of 17)	36477.0	NM_172671	107515.0	Mm.277351	NM_172671	ENSMUSG00000050199	Lgr4	9130225G07|A330106J01Rik|A930009A08Rik|Gpr48	leucine-rich repeat-containing G protein-coupled receptor 4	protein-coding	2.19962858732204	2.24338205955285	2.37983778761477	2.11186432080252	2.21723951241225	1.61186469486455	1.92252119753077	1.86910879413887	-0.815969285331688	0.365061079050003	0.861036332257394
Merged-chr15-86205018-2	chr15	86204918	86205118	+	649.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-9441.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81136342-6	chr10	81136177	81136377	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010731)	promoter-TSS (NM_010731)	6.0	NM_010731	16969.0	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-94382683-2	chr13	94382579	94382779	+	852.5	f0_balb.idr|f0_c57.idr	intron (NM_009680, intron 1 of 26)	intron (NM_009680, intron 1 of 26)	23719.0	NM_009680	11774.0	Mm.21185	NM_009680	ENSMUSG00000021686	Ap3b1	AP-3|AU015684|C78395|Hps2|beta3A|pe|pearl|rim2	adaptor-related protein complex 3, beta 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-21009242-3	chr11	21009133	21009333	+	853.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-82091.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-76691004-4	chr2	76690907	76691107	+	969.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031256, intron 6 of 7)	intron (NM_031256, intron 6 of 7)	15692.0	NM_031256	83435.0	Mm.41636	NM_031256	ENSMUSG00000002733	Plekha3	FAPP1	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125382491-1	chr6	125382391	125382591	+	1000.0	f1_balb.idr	Intergenic	Intergenic	-1987.0	NM_198604	213522.0	Mm.333396	NM_198604	ENSMUSG00000038167	Plekhg6	BC026778|Gm155	pleckstrin homology domain containing, family G (with RhoGef domain) member 6	protein-coding	0.93234542285345	1.20527954441978	0.994864394574115	0.780865990049355	1.2102358899659	1.21447176857081	1.56081279076316	1.77251988997497	2.15162517391251	0.106353326693766	0.509053409709498
Merged-chr15-50855178-4	chr15	50855071	50855271	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_032000, intron 1 of 5)	ORR1F|LTR|ERVL-MaLR	33878.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-72694102-3	chr12	72694007	72694207	+	929.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29279.0	NM_025522	66375.0	Mm.289653	NM_025522	ENSMUSG00000021094	Dhrs7	2310016E22Rik|5730564L20Rik|AW061210|Retdsr4|Retsdr4	dehydrogenase/reductase (SDR family) member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-34702777-2	chr12	34702671	34702871	+	592.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_001271386, intron 3 of 27)	intron (NM_001271386, intron 3 of 27)	-173882.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	-0.123135187333343	-0.250275794978117	-0.254659456083432	0.360795132830538	0.297742741945297	-0.249286668312685	-0.25369321787325	-0.257447048004496	-0.413312421985046	0.865453198471136	1
Merged-chr3-54611761-4	chr3	54611656	54611856	+	822.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-81059.0	NR_152185	56790.0	Mm.486375	NM_019995	ENSMUSG00000027751	Supt20	AA667204|AI450544|D3Ertd300e|Fam48a|Supt20h|p38IP	suppressor of Ty 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43456449-1	chr4	43456349	43456549	+	697.0	f1_balb.idr	Intergenic	B2_Mm1t|SINE|B2	-1823.0	NM_007654	12517.0	Mm.188157	NM_007654	ENSMUSG00000028459	Cd72	CD72c|Ly-19|Ly-32|Ly-m19|Lyb-2	CD72 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4087369-2	chr19	4087269	4087469	+	750.75	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001160253)	TTS (NM_001160253)	3850.0	NM_013878	29866.0	Mm.46268	NM_013878	ENSMUSG00000024857	Cabp2	-	calcium binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34628292-3	chr17	34628179	34628379	+	765.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302394)	promoter-TSS (NM_001302394)	0.0	NM_001302393	54397.0	Mm.373627	NM_019441	ENSMUSG00000015474	Ppt2	0610007M19Rik|AA672937	palmitoyl-protein thioesterase 2	protein-coding	2.19399735811619	2.68919786054116	2.422306285852	4.80452163519984	2.21681939595679	2.7118981827845	2.44487538416708	3.90656634778003	-0.798232087803313	0.325104890631001	0.827686054135822
Merged-chr14-31494147-4	chr14	31494058	31494258	+	876.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028932)	promoter-TSS (NM_028932)	600.0	NM_001359850	67011.0	Mm.291731	NM_025907	ENSMUSG00000021891	Mettl6	1600013P15Rik|AI467521|AU020711	methyltransferase like 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-59502315-2	chr11	59502215	59502415	+	554.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291014, intron 5 of 9)	intron (NM_001291014, intron 5 of 9)	-3338.0	NR_135273	74476.0	Mm.440257	NR_015585	ENSMUSG00000072893	4933439C10Rik	2610028M21Rik	RIKEN cDNA 4933439C10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-94490865-2	chr3	94490765	94490965	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_151857, intron 11 of 11)	intron (NR_151857, intron 11 of 11)	6507.0	NR_151857	78784.0	Mm.44292	NM_172434	ENSMUSG00000028137	Celf3	4930415M08Rik|BRUNOL1|CAGH4|ERDA4|ETR-1|Tnrc4	CUGBP, Elav-like family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117341378-2	chr8	117341278	117341478	+	945.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	ORR1D1|LTR|ERVL-MaLR	-7792.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-15838993-2	chr11	15838899	15839099	+	824.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-418725.0	NM_001290539	211739.0	Mm.284015	NM_145967	ENSMUSG00000048834	Vstm2a	Vstm2	V-set and transmembrane domain containing 2A	protein-coding	0.50034902119713	0.54142786223546	1.44795067160536	0.517940522400252	0.691979254633264	0.544352160998229	1.46380816802448	1.58076800051619	1.27314604421914	0.448194102075861	0.914944334739028
Merged-chr16-76762053-4	chr16	76761940	76762140	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155453, intron 1 of 3)	intron (NR_155453, intron 1 of 3)	17052.0	NR_155453	102632814.0		NR_155453	ENSMUSG00000109333	Gm30790	Gm45028	predicted gene, 30790	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153264966-2	chr2	153264866	153265066	+	719.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_080463, intron 6 of 6)	intron (NM_080463, intron 6 of 6)	23434.0	NM_080463	140484.0	Mm.293761	NM_080463	ENSMUSG00000046020	Pofut1	O-FucT-1|mKIAA0180	protein O-fucosyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-29368617-4	chr19	29368492	29368692	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021893, intron 1 of 6)	intron (NM_021893, intron 1 of 6)	1154.0	NM_021893	60533.0	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-82855827-4	chr18	82855725	82855925	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_125720)	promoter-TSS (NR_125720)	-72.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55558737-2	chr14	55558637	55558837	+	806.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	-1292.0	NR_037572	28199.0	Mm.11535	NM_133734	ENSMUSG00000022214	Dcaf11	0710008A13Rik|C76035|D14Ucla1|Dacf11|GLO14|Wdr23	DDB1 and CUL4 associated factor 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-93071579-4	chr1	93071489	93071689	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001294150, intron 9 of 46)	intron (NM_001294150, intron 9 of 46)	10891.0	NM_001294150	16560.0	Mm.276408	NM_008440	ENSMUSG00000014602	Kif1a	ATSV|C630002N23Rik|Gm1626|Kns1	kinesin family member 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-86814268-2	chr8	86814168	86814368	+	806.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT2B3|LTR|ERVL	-68262.0	NM_009172	20437.0	Mm.324553	NM_009172	ENSMUSG00000036840	Siah1a	AA982064|AI853500|Sinh1a	siah E3 ubiquitin protein ligase 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-76901792-3	chr11	76901696	76901896	+	597.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2749.0	NM_025655	66601.0	Mm.25138	NM_025655	ENSMUSG00000020839	Tmigd1	2010002A20Rik|Tmigd	transmembrane and immunoglobulin domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-34189574-2	chr10	34189474	34189674	+	637.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172508, intron 1 of 5)	intron (NM_172508, intron 1 of 5)	17977.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-88970642-1	chr11	88970542	88970742	+	606.0	f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-1996.0	NR_003492	72381.0	Mm.288885	NR_003492	ENSMUSG00000081766	2210409E12Rik	AU021711|C76890	transcription elongation factor B (SIII), polypeptide 2 pseudogene	pseudo	2.08575289472282	2.84954500190118	1.5525912608645	2.38619370175504	0.788306913584509	0.884127357186706	0.854694732794554	0.82832256903656	-5.69036513780576	3.15685503640272e-05	0.0012011399596224
Merged-chr6-146081188-2	chr6	146081088	146081288	+	632.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	147066.0	NM_010656	16651.0	Mm.49689	NM_010656	ENSMUSG00000030255	Sspn	Krag	sarcospan	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-22345941-3	chr10	22345839	22346039	+	910.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009018, intron 6 of 6)	intron (NM_009018, intron 6 of 6)	-15955.0	NM_020030	56554.0	Mm.458004	NM_020030	ENSMUSG00000078452	Raet1d	RAE-1delta	retinoic acid early transcript delta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-73645771-4	chr15	73645677	73645877	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-21033.0	NM_001033219	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-138340092-1	chr4	138339992	138340192	+	953.0	f1_balb.idr	intron (NM_028176, intron 3 of 3)	intron (NM_028176, intron 3 of 3)	-13796.0	NM_026880	68943.0	Mm.18539	NM_026880	ENSMUSG00000028756	Pink1	1190006F07Rik|AU042772|AW557854|BRPK|mFLJ00387	PTEN induced putative kinase 1	protein-coding	1.89683845308102	2.15156874019943	1.06136489791449	2.00854437294415	1.69045542996733	1.09197327963154	2.60684665805076	1.28129199443735	-0.0299565362040603	0.979567943434012	0.998431161219273
Merged-chr16-36642119-3	chr16	36642014	36642214	+	857.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019388, intron 1 of 7)	intron (NM_019388, intron 1 of 7)	23963.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-50896859-2	chr14	50896759	50896959	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3604.0	NM_001166651	546611.0	Mm.390692	NM_001166651	ENSMUSG00000090799	Klhl33	EG546611	kelch-like 33	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-10358935-3	chr17	10358847	10359047	+	818.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34345.0	NR_045461	76634.0	Mm.491052	NR_045461	ENSMUSG00000099384	1700110C19Rik	-	RIKEN cDNA 1700110C19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-94772118-4	chr8	94772027	94772227	+	951.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009142)	promoter-TSS (NM_009142)	-53.0	NM_009142	20312.0	Mm.103711	NM_009142	ENSMUSG00000031778	Cx3cl1	AB030188|ABCD-3|AI848747|CX3C|Cxc3|D8Bwg0439e|Scyd1	chemokine (C-X3-C motif) ligand 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-20155668-4	chr3	20155581	20155781	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013755)	promoter-TSS (NM_013755)	-565.0	NM_013755	27357.0	Mm.6375	NM_013755	ENSMUSG00000019528	Gyg	AU017667|GN1|Gyg1	glycogenin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-9451023-3	chr18	9450880	9451080	+	658.9111330000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026484)	promoter-TSS (NM_026484)	-826.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	1.17918397588459	0.844715317519741	2.26038606263048	1.92162476765331	0.773212758883184	0.849980347636054	2.4314384242927	1.0562352888507	-0.436675960763394	0.749242986914032	0.998431161219273
Merged-chr5-134617355-3	chr5	134617264	134617464	+	869.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2339.0	NM_020044	56743.0	Mm.391375	NM_020044	ENSMUSG00000040751	Lat2	AW125574|LAB|NTAL|WSCR5|Wbscr15|Wbscr5	linker for activation of T cells family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-77864279-4	chr14	77864167	77864367	+	932.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025384, intron 1 of 5)	intron (NM_025384, intron 1 of 5)	10650.0	NM_025384	66148.0	Mm.248046	NM_025384	ENSMUSG00000022013	Dnajc15	1110003P16Rik|Dnajd1	DnaJ heat shock protein family (Hsp40) member C15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-32950409-4	chr19	32950300	32950500	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	192823.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-106367843-4	chr9	106367741	106367941	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153459)	promoter-TSS (NM_153459)	-791.0	NM_153459	235584.0	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	5.35357976316414	5.1638768802967	5.08419218178964	5.28165066116842	5.27117281116915	5.4161657295708	5.0034160590497	5.49358079789123	0.0930054626958615	0.746612080339594	0.998431161219273
Merged-chr6-97429931-4	chr6	97429821	97430021	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	MTD|LTR|ERVL-MaLR	29365.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167070380-2	chr2	167070280	167070480	+	635.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5087.0	NR_028540	100217443.0		NR_028540		Snord12	MBII-99	small nucleolar RNA, C/D box 12	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-157566802-4	chr2	157566709	157566909	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016916)	promoter-TSS (NM_016916)	-448.0	NM_016916	53619.0	Mm.480461	NM_016916	ENSMUSG00000067787	Blcap	AI462828|Bc10	bladder cancer associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-65577871-2	chr16	65577771	65577971	+	573.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15174.0	NM_026879	68942.0	Mm.432944	NM_026879	ENSMUSG00000004843	Chmp2b	1190006E07Rik	charged multivesicular body protein 2B	protein-coding	0.056445363427527	0.0504508986155755	0.251993157772269	-0.297182145089388	-0.30154149613598	-0.289154105835869	-0.293200827867678	-0.296642060438796	-3.5881371491381	0.137033892001519	1
Merged-chr4-41552741-2	chr4	41552641	41552841	+	672.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027993, intron 1 of 5)	MIRb|SINE|MIR	16786.0	NM_001159583	71901.0	Mm.39215	NM_027993	ENSMUSG00000028439	Fam219a	2310028H24Rik	family with sequence similarity 219, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-110542095-3	chr11	110541991	110542191	+	989.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	62751.0	NM_001356346	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	3.1262553279907	2.83840931832618	2.61571078243677	2.54163429163507	2.29754754047305	3.18554504932962	3.40397542576117	3.23309118626122	0.518041303394656	0.444726307342336	0.912265842646861
Merged-chr9-62868770-2	chr9	62868670	62868870	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_138304, exon 3 of 5)	exon (NM_138304, exon 3 of 5)	-6746.0	NR_003965	677044.0	Mm.422004	NR_003965	ENSMUSG00000074250	Gm10653	-	ribsomal protein S2 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80229879-4	chr7	80229791	80229991	+	961.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291276, intron 1 of 4)	PB1D10|SINE|Alu	2914.0	NM_001291276	23991.0	Mm.30217	NM_011870	ENSMUSG00000030538	Cib1	Cibkip|Kip|Prkdcip	calcium and integrin binding 1 (calmyrin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-114274453-2	chr7	114274358	114274558	+	724.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_011965, exon 2 of 10)	exon (NM_011965, exon 2 of 10)	1658.0	NM_011965	26440.0	Mm.121265	NM_011965	ENSMUSG00000030751	Psma1	C2|HC2|Pros-30|alpha-type	proteasome (prosome, macropain) subunit, alpha type 1	protein-coding	-0.0188050216095028	-0.00131745064809163	0.573169627910436	0.423798760913193	-0.017709815941012	0.635315332471196	-0.00577192480386043	-0.0106798569266733	-0.568942388705627	0.800150241441528	1
Merged-chr12-80816619-4	chr12	80816518	80816718	+	994.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001242419, intron 1 of 6)	intron (NM_001242419, intron 1 of 6)	26086.0	NM_001242419	217684.0	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-136140236-4	chr1	136140170	136140370	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039472, intron 1 of 34)	intron (NM_001039472, intron 1 of 34)	8880.0	NR_153829	16565.0	Mm.276135	NM_019962	ENSMUSG00000041642	Kif21b	2610511N21Rik|mKIAA0449	kinesin family member 21B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-189654527-3	chr1	189654407	189654607	+	878.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081363, exon 13 of 18)	exon (NM_001081363, exon 13 of 18)	33579.0	NM_001081363	108000.0	Mm.129746	NM_001081363	ENSMUSG00000026605	Cenpf	6530404A22Rik|AI325968|CENF|Lek1|PRO1779|mitosin	centromere protein F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-30593895-4	chr14	30593811	30594011	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16399.0	NM_001310682	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	5.82469375876763	6.05814217043682	6.06070315950662	6.44612704106483	6.16526510389427	5.92615421391508	6.31925162163402	6.23410819518893	0.0620380686783001	0.786490286011449	0.998431161219273
Merged-chr19-5965422-3	chr19	5965344	5965544	+	877.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1238.0	NM_008893	18969.0	Mm.209931	NM_008893	ENSMUSG00000024833	Pola2	AI573378	polymerase (DNA directed), alpha 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-118637634-3	chr7	118637516	118637716	+	902.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028930, intron 1 of 17)	ORR1D2|LTR|ERVL-MaLR	3880.0	NM_028930	74424.0	Mm.11068	NM_028930	ENSMUSG00000030650	Tmc5	4932443L08Rik|AU016085	transmembrane channel-like gene family 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-84719659-2	chr18	84719559	84719759	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173770)	promoter-TSS (NM_173770)	-485.0	NM_173770	240479.0	Mm.472378	NM_173770	ENSMUSG00000047992	Fam69c	B230399E16Rik	family with sequence similarity 69, member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-61583904-2	chr2	61583804	61584004	+	656.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011529, intron 1 of 7)	B4|SINE|B4	5318.0	NM_011529	21353.0	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96883591-4	chr3	96883469	96883669	+	856.908325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026229, intron 7 of 13)	intron (NM_026229, intron 7 of 13)	21729.0	NM_026229	67549.0	Mm.46722	NM_026229	ENSMUSG00000028096	Gpr89	4933412D19Rik|Gpr89a|SH120	G protein-coupled receptor 89	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-103655484-4	chr5	103655399	103655599	+	995.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_028824, exon 1 of 4)	5' UTR (NM_028824, exon 1 of 4)	225.0	NM_028824	74218.0	Mm.159141	NM_028824	ENSMUSG00000029320	1700016H13Rik	-	RIKEN cDNA 1700016H13 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-32134579-2	chr5	32134479	32134679	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-1893.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-94802540-4	chr8	94802433	94802633	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-7920.0	NM_011332	20295.0	Mm.41988	NM_011332	ENSMUSG00000031780	Ccl17	Abcd-2|Scya17|Scya17l|Tarc	chemokine (C-C motif) ligand 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-168579739-3	chr2	168579641	168579841	+	814.805542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291169, intron 1 of 10)	intron (NM_001291169, intron 1 of 10)	10624.0	NM_001291178	18019.0	Mm.116802	NM_010899	ENSMUSG00000027544	Nfatc2	AI607462|NF-ATc2|NF-ATp|NFAT1|NFAT1-D|Nfatp	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2	protein-coding	-1.5061220274826	-1.47360709383584	-1.48343987814663	-1.49151681994238	-1.50383953926072	-1.47147628845725	-1.0170701920923	-1.49007105122263	2.15652851593596	0.535359572134045	1
Merged-chr13-110943188-4	chr13	110943071	110943271	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39325.0	NR_131194	102636142.0	Mm.417611	NR_131194		4930526H09Rik	-	RIKEN cDNA 4930526H09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-155443536-4	chr2	155443500	155443700	+	926.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-2817.0	NM_019825	56406.0	Mm.27592	NM_019825	ENSMUSG00000038369	Ncoa6	AIB3|ASC-2|ASC2|NRC|Ncoa7|PRIP|RAP250|mKIAA0181	nuclear receptor coactivator 6	protein-coding	2.80275275166837	2.84793147272801	1.47409656540737	3.19070460191462	3.24110637014153	3.41984729052036	1.48554239720313	2.88429886131077	0.39230968878493	0.653522800894774	0.986782418856054
Merged-chr11-40754795-4	chr11	40754705	40754905	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009831, intron 1 of 5)	intron (NM_009831, intron 1 of 5)	481.0	NM_009831	12450.0	Mm.2103	NM_009831	ENSMUSG00000020326	Ccng1	AI314029	cyclin G1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-104005220-4	chr5	104005130	104005330	+	920.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053262, intron 4 of 6)	intron (NM_053262, intron 4 of 6)	16566.0	NM_053262	114664.0	Mm.46019	NM_053262	ENSMUSG00000029311	Hsd17b11	Dhrs8|Pan1b|SDR2|retSDR2	hydroxysteroid (17-beta) dehydrogenase 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-161550872-4	chr1	161550774	161550974	+	876.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56217.0	NM_183391	240873.0	Mm.276823	NM_183391	ENSMUSG00000066755	Tnfsf18	Gitrl|Tnlg2a	tumor necrosis factor (ligand) superfamily, member 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-86227454-1	chr3	86227354	86227554	+	735.0	f1_balb.idr	intron (NM_001077687, intron 2 of 50)	intron (NM_001077687, intron 2 of 50)	2764.0	NM_001077688	80877.0	Mm.439825	NM_030695	ENSMUSG00000028080	Lrba	C80285|D3Ertd775e|Lab300|Lba	LPS-responsive beige-like anchor	protein-coding	-0.240169481955788	0.689337262229696	-0.227121902276282	-0.231995123935526	-0.238946639797669	0.479093659243128	-0.225735590711415	-0.231141084245056	-0.558157412577905	0.821447147438224	1
Merged-chr7-81195714-4	chr7	81195643	81195843	+	809.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MamGypLTR1a|LTR|Gypsy	-18061.0	NM_008803	18584.0	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126495177-2	chr8	126495077	126495277	+	733.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-20112.0	NM_001159907	212728.0	Mm.482479	NM_001159907	ENSMUSG00000090290	Tarbp1	Gm17296|Gm179	TAR RNA binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126839280-1	chr8	126839180	126839380	+	1000.0	f0_balb.idr	Intergenic	Intergenic	-9740.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-53999207-4	chr5	53999116	53999316	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081103, intron 1 of 11)	intron (NM_001081103, intron 1 of 11)	693.0	NM_001081103	116873.0	Mm.265985	NM_054083	ENSMUSG00000039156	Stim2	-	stromal interaction molecule 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99590059-1	chr15	99589959	99590159	+	554.0	f1_c57bl6.idr	promoter-TSS (NM_009701)	promoter-TSS (NM_009701)	-969.0	NM_009701	11830.0	Mm.45580	NM_009701	ENSMUSG00000044217	Aqp5	-	aquaporin 5	protein-coding	-2.18243820993087	-2.15538464093652	-2.16356586349869	-2.17028616330028	-2.18053909940952	-2.15361173587851	-2.16171381403791	-2.0403552525549	0.759018020146679	0.829933115115583	1
Merged-chr10-84286315-4	chr10	84286201	84286401	+	972.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	154170.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28401300-2	chr7	28401200	28401400	+	678.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_175021, exon 13 of 13)	3' UTR (NM_175021, exon 13 of 13)	8304.0	NM_019458	54624.0	Mm.7916	NM_019458	ENSMUSG00000003437	Paf1	5730511K23Rik|AA675045	Paf1, RNA polymerase II complex component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-38765391-3	chr12	38765334	38765534	+	703.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14648.0	NM_001347379	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127744390-3	chr7	127744245	127744445	+	721.023804	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2430.0	NM_172748	233902.0	Mm.259353	NM_172748	ENSMUSG00000030811	Fbxl19	6030430O11|BC059812|Fbl19	F-box and leucine-rich repeat protein 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-42092107-2	chr19	42092023	42092223	+	635.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_145501, intron 1 of 8)	B1_Mur3|SINE|Alu	1688.0	NM_145501	84095.0	Mm.117037	NM_145501	ENSMUSG00000025178	Pi4k2a	Pi4k2	phosphatidylinositol 4-kinase type 2 alpha	protein-coding	1.1491725636671	0.761846070757864	0.948331688875521	1.53390862030623	0.727145093604954	1.44754394093729	1.12235595850436	1.44767057107771	0.345293547364323	0.806597778738874	0.998431161219273
Merged-chr6-127561736-4	chr6	127561641	127561841	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-16234.0	NM_001033464	381812.0	Mm.296093	NM_001033464	ENSMUSG00000061414	Cracr2a	Efcab4b|Gm1073|Gm462	calcium release activated channel regulator 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-52528991-2	chr18	52528891	52529091	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_010728, exon 1 of 7)	exon (NM_010728, exon 1 of 7)	730.0	NM_001286181	16948.0	Mm.172	NM_010728	ENSMUSG00000024529	Lox	AI893619|TSC-160|rrg	lysyl oxidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-87522985-2	chr17	87522885	87523085	+	661.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-76050.0	NM_007589	12314.0	Mm.329243	NM_007589	ENSMUSG00000036438	Calm2	1500001E21Rik|AL024017|Cam2|CamC	calmodulin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-164874117-2	chr2	164874017	164874217	+	712.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5251.0	NM_146129	228866.0	Mm.241134	NM_146129	ENSMUSG00000039849	Pcif1	2310022K11Rik|C20orf67|F730014I05Rik	PDX1 C-terminal inhibiting factor 1	protein-coding	-0.914587585352826	-1.14968844836017	-1.16012564310979	-1.16869906563582	-0.801023986531728	-1.14742666471813	-1.15776289099527	-1.16716442710272	0.46649237519341	0.890119923761052	1
Merged-chr2-103606789-1	chr2	103606689	103606889	+	1000.0	f0_balb.idr	intron (NM_178890, intron 1 of 16)	intron (NM_178890, intron 1 of 16)	40479.0	NM_178890	99382.0	Mm.35850	NM_178890	ENSMUSG00000032724	Abtb2	AW539457|BPOZ-2	ankyrin repeat and BTB (POZ) domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-76098009-2	chr13	76097909	76098109	+	773.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081352)	promoter-TSS (NM_001081352)	651.0	NM_001360843	77041.0	Mm.196399	NM_029847	ENSMUSG00000021592	Arsk	2810429K17Rik|4833414G15Rik	arylsulfatase K	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-117319846-4	chr3	117319749	117319949	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177664, exon 7 of 7)	3' UTR (NM_177664, exon 7 of 7)	41027.0	NM_177664	229791.0	Mm.140138	NM_177664	ENSMUSG00000044667	Plppr4	A330086D10|D3Bwg0562e|Lppr4|PRG-1|mKIAA0455	phospholipid phosphatase related 4	protein-coding	5.94632215382472	5.90076686730319	5.36690775319372	5.96760365082749	6.0010562053367	6.05636208424424	5.91476472545515	6.58434551701679	0.383618747500091	0.129711207562065	0.564413105051856
Merged-chr9-40581962-4	chr9	40581904	40582104	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50621.0	NM_001357617	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	6.40079852822245	6.10837014806324	6.68254704440876	6.44753518889602	6.58846374201421	6.27332130640772	6.77265390080346	6.68012980369255	0.179314060889392	0.38608140908964	0.876318810939384
Merged-chr17-26605784-4	chr17	26605679	26605879	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026170, intron 1 of 9)	intron (NM_026170, intron 1 of 9)	44267.0	NM_026170	67458.0	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	5.88930520091369	6.16132526790573	6.22389109827809	5.81547322743002	5.859039062321	6.15507340259062	6.22611135843562	6.22876919221153	0.102299800691812	0.653311480538142	0.986651124875732
Merged-chr12-57244355-3	chr12	57244243	57244443	+	959.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164370, intron 1 of 9)	intron (NM_001164370, intron 1 of 9)	13918.0	NM_001164370	73490.0	Mm.268180	NM_001164370	ENSMUSG00000047022	Mipol1	1700081O04Rik|6030439O22Rik|AU021838|AW536152|D12Ertd19e	mirror-image polydactyly 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117420949-2	chr8	117420849	117421049	+	580.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028941, intron 5 of 20)	intron (NM_028941, intron 5 of 20)	-32074.0	NR_106045	102466801.0		NR_106045	ENSMUSG00000099062	Mir7077	Gm27774|mmu-mir-7077	microRNA 7077	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-141066024-4	chr6	141065921	141066121	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19A|LTR|ERVK	-183248.0	NM_018779	54611.0	Mm.103728	NM_018779	ENSMUSG00000041741	Pde3a	A930022O17Rik|C87899	phosphodiesterase 3A, cGMP inhibited	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-62613437-2	chr11	62613337	62613537	+	562.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357955, intron 2 of 3)	intron (NM_001357955, intron 2 of 3)	8907.0	NR_028541	100217444.0		NR_028541		Snord65	MBII-135|snoRNA135	small nucleolar RNA, C/D box 65	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-12647919-4	chr13	12647807	12648007	+	797.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_003568, intron 1 of 6)	intron (NR_003568, intron 1 of 6)	2488.0	NR_003568	664862.0	Mm.415635	NR_003568		Gpr137b-ps	2310041G17Rik	G protein-coupled receptor 137B, pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134917046-5	chr6	134916876	134917076	+	847.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3425.0	NM_009875	12576.0	Mm.2958	NM_009875	ENSMUSG00000003031	Cdkn1b	AA408329|AI843786|Kip1|p27|p27Kip1	cyclin-dependent kinase inhibitor 1B	protein-coding	1.38795000842953	1.61536172065502	3.39911556449214	1.2429478377966	1.59902531626738	1.02779747095743	3.52125324036252	1.25145764450995	0.0707137834446254	0.950103792774677	0.998431161219273
Merged-chr15-59646921-4	chr15	59646823	59647023	+	998.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1731.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-152173213-4	chr4	152173100	152173300	+	831.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4900.0	NM_133348	70025.0	Mm.296191	NM_133348	ENSMUSG00000028937	Acot7	2410041A17Rik|Ach1|Act|Bach|CTE-IIa|Cte-II|Lach1	acyl-CoA thioesterase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-22059581-2	chr10	22059492	22059692	+	918.833374	f0_c57.idr|f1_c57bl6.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	8487.0	NM_053264	114671.0	Mm.288194	NM_053264	ENSMUSG00000069712	4930444G20Rik	-	RIKEN cDNA 4930444G20 gene	protein-coding	4.58614729287753	3.11957289723263	2.75556614885698	4.33267922840224	2.65479184905075	1.57079843813164	1.81139986600448	3.13231291636832	-2.31523319619502	0.00198191687844523	0.0331184383114009
Merged-chr14-45656372-2	chr14	45656240	45656440	+	926.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_176845, intron 1 of 12)	intron (NM_176845, intron 1 of 12)	1713.0	NR_039593	100628600.0		NR_039593	ENSMUSG00000093167	Mir5131	mmu-mir-5131|mu-mir-5131	microRNA 5131	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-99215435-4	chr5	99215307	99215507	+	982.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37520.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-19621433-2	chr9	19621348	19621548	+	791.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172918)	promoter-TSS (NM_172918)	-643.0	NM_172918	244713.0	Mm.67366	NM_172918	ENSMUSG00000057551	Zfp317	4932416G03|D230022C05Rik|KRAB9|Zfp67|Zfp75|mszf40	zinc finger protein 317	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6405444-2	chr19	6405344	6405544	+	772.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011242, intron 8 of 16)	intron (NM_011242, intron 8 of 16)	4861.0	NM_011242	19395.0	Mm.77017	NM_011242	ENSMUSG00000032946	Rasgrp2	CDC25L|Caldaggef1	RAS, guanyl releasing protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-66680314-3	chr9	66680235	66680435	+	835.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33351.0	NM_178396	76459.0	Mm.277921	NM_178396	ENSMUSG00000032373	Car12	2310047E01Rik|AI314958|CA-XII|Ca12	carbonic anhydrase 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-9983650-2	chr6	9983550	9983750	+	564.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13B|LTR|ERVK	990728.0	NR_033776	57866.0	Mm.4397	NR_033776		AA545190	-	EST AA545190	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75456357-3	chr11	75456241	75456441	+	868.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-1624.0	NM_138950	192652.0	Mm.340378	NM_138950	ENSMUSG00000045374	Wdr81	BC054822|Gm883|mFLJ00182|nur5	WD repeat domain 81	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-94077492-2	chr11	94077399	94077599	+	885.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025430, intron 5 of 25)	intron (NM_001025430, intron 5 of 25)	33294.0	NM_001025429	70834.0	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-98476608-3	chr15	98476426	98476626	+	929.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6157.0	NM_010679	16770.0	Mm.5074	NM_010679	ENSMUSG00000022991	Lalba	AW208827|Lyzg	lactalbumin, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-29079054-4	chr17	29078913	29079113	+	975.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_036469, exon 1 of 2)	non-coding (NR_036469, exon 1 of 2)	113.0	NR_036469	100504267.0	Mm.438550	NR_036469	ENSMUSG00000085912	Trp53cor1	Gm16197|linc-p21|lincRNA-p21	tumor protein p53 pathway corepressor 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171658151-1	chr1	171658051	171658251	+	567.0	f1_balb.idr	Intergenic	Intergenic	-5114.0	NM_144539	75345.0	Mm.164642	NM_144539	ENSMUSG00000038179	Slamf7	19A|19A24|4930560D03Rik|CRACC|CS1	SLAM family member 7	protein-coding	-0.2960354512408	-0.660070103681388	-0.663494728081151	-0.666133343512661	-0.66985658353704	-0.659297437314877	-0.662739847393837	-0.0299857158421896	0.986679507149591	0.735173318817099	1
Merged-chr2-57231933-2	chr2	57231833	57232033	+	554.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6D|LTR|ERVK	-5745.0	NM_001145820	14571.0	Mm.3711	NM_010274	ENSMUSG00000026827	Gpd2	AA408484|AI448216|AU021455|AW494132|GPDH|Gdm1|Gpd-m|Gpdh-m|TISP38	glycerol phosphate dehydrogenase 2, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91950926-4	chr2	91950934	91951134	+	908.025024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166597)	promoter-TSS (NM_001166597)	-686.0	NM_001166597	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	1.2133969069781	0.949165941466061	1.13571907450029	1.81604200747043	1.64822547995155	1.50892750758105	1.45798969870489	1.41338170741955	0.646121747886678	0.596544323041575	0.971586575449917
Merged-chr16-90283744-4	chr16	90283645	90283845	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346799, intron 1 of 19)	CpG	741.0	NM_001346799	224432.0	Mm.439811	NM_178923	ENSMUSG00000022983	Scaf4	AA517739|Sfrs15|Sra4|Srsf15	SR-related CTD-associated factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-56433283-4	chr18	56433194	56433394	+	982.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026240, intron 1 of 13)	intron (NM_026240, intron 1 of 13)	1162.0	NM_026240	107022.0	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|Gramd2b|NS3TP2	GRAM domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-31038577-4	chr17	31038481	31038681	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19113.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	4.20015875202245	4.40148853357408	4.06092931412928	4.72118803780385	4.53649687480899	4.98269003011529	4.22818244372313	5.1708640127809	0.51364411442354	0.189357749722146	0.667555616405381
Merged-chr4-111328228-3	chr4	111328139	111328339	+	752.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001284190, intron 5 of 12)	intron (NM_001284190, intron 5 of 12)	-86767.0	NR_033793	67621.0	Mm.45533	NM_026279	ENSMUSG00000028545	Bend5	2310026E23Rik	BEN domain containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-40244286-4	chr4	40244165	40244365	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER57E2|LTR|ERV1	-4440.0	NM_172689	230073.0	Mm.86382	NM_172689	ENSMUSG00000040296	Ddx58	6430573D20Rik|C330021E21|RIG-I|RLR-1	DEAD (Asp-Glu-Ala-Asp) box polypeptide 58	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-77364596-2	chr6	77364496	77364696	+	779.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145732, intron 8 of 18)	intron (NM_145732, intron 8 of 18)	17879.0	NR_045141	70753.0	Mm.490700	NR_045141	ENSMUSG00000108077	6330415B21Rik	-	RIKEN cDNA 6330415B21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-13500687-4	chr10	13500618	13500818	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001330198)	promoter-TSS (NM_001330198)	-310.0	NM_001330198	66848.0	Mm.26625	NM_025799	ENSMUSG00000019810	Fuca2	0610025O11Rik|5530401P20Rik	fucosidase, alpha-L- 2, plasma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-99485395-4	chr6	99485321	99485521	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347345, intron 1 of 19)	intron (NM_001347345, intron 1 of 19)	35572.0	NM_001347345	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118203660-2	chr11	118203560	118203760	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	9082.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-72236576-4	chr1	72236516	72236716	+	924.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-7377.0	NR_155355	320933.0	Mm.440953	NR_155355		D230017M19Rik	B930094L07Rik	RIKEN cDNA D230017M19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-187032019-2	chr1	187031919	187032119	+	792.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR41|LTR|ERVL	64603.0	NM_033077	110957.0	Mm.108054	NM_033077	ENSMUSG00000039224	D1Pas1	Pl10	DNA segment, Chr 1, Pasteur Institute 1	protein-coding	-1.50811478453619	-0.99851579554048	-1.48484165847197	-1.49312904261012	-1.50577282675516	-1.47256636097272	-1.48255773576353	-1.49164560481169	-2.24133836997777	0.518237887813808	1
Merged-chr7-127021217-2	chr7	127021117	127021317	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001102563)	promoter-TSS (NM_001102563)	-6.0	NM_001102563	69017.0	Mm.392047	NM_001102563	ENSMUSG00000045114	Prrt2	1500031I19Rik|AI195361|DSPB3	proline-rich transmembrane protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-69205376-1	chr10	69205276	69205476	+	646.0	f0_balb.idr	Intergenic	Intergenic	-3176.0	NM_001252636	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-96093612-2	chr11	96093512	96093712	+	737.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TGGA)n|Simple_repeat|Simple_repeat	-17918.0	NM_007506	11951.0	Mm.258	NM_007506	ENSMUSG00000006057	Atp5g1	-	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C1 (subunit 9)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-40079393-2	chr10	40079293	40079493	+	783.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 2 of 5)	intron (NM_001114332, intron 2 of 5)	-54125.0	NM_144821	215929.0	Mm.55513	NM_144821	ENSMUSG00000038522	Mfsd4b1	AI317395|AI482555|Naglt1a	major facilitator superfamily domain containing 4B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-11178225-2	chr16	11178125	11178325	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_151506)	promoter-TSS (NR_151506)	49.0	NR_151506	105246071.0	Mm.426799	NR_151506		4930509G22Rik	-	RIKEN cDNA 4930509G22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-4239370-4	chr7	4239275	4239475	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081239, intron 4 of 5)	intron (NM_001081239, intron 4 of 5)	1621.0	NM_001081239	232801.0	Mm.258061	NM_001081239	ENSMUSG00000070873	Lilra5	E030017K20|EG232801|Gm4878|Lilrc1	leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 5	protein-coding	4.56854880821108	3.70409389481384	4.93782319586219	4.28693512238341	3.95136464817077	3.12260792330375	4.8656372502387	4.02527426917411	-0.411027707688487	0.399904936437328	0.885176145862419
Merged-chr11-97799010-4	chr11	97798885	97799085	+	844.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010688)	promoter-TSS (NM_010688)	-580.0	NM_010688	16796.0	Mm.271967	NM_010688	ENSMUSG00000038366	Lasp1	AA408629|Def-4|LASP-1|MLN 50|SH3P6|Tg(Col1a1-lacZ)1Ngma	LIM and SH3 protein 1	protein-coding	1.91961709907144	2.17204073433979	1.16022704475708	1.1359027926016	2.72338672768849	2.42737740933714	1.42867224416643	2.44813468385706	1.64603923841153	0.12591190695767	0.555810952405876
Merged-chr18-77861960-4	chr18	77861854	77862054	+	732.854187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013831, intron 6 of 14)	intron (NM_013831, intron 6 of 14)	-65564.0	NR_152167	619308.0	Mm.490456	NM_001033812		F830208F22Rik	-	RIKEN cDNA F830208F22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-84386869-2	chr2	84386769	84386969	+	815.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_018782, intron 2 of 15)	intron (NM_018782, intron 2 of 15)	38397.0	NM_018782	54598.0	Mm.75467	NM_018782	ENSMUSG00000059588	Calcrl	AV071593|CRLR	calcitonin receptor-like	protein-coding	1.56910391136051	1.62904894833863	0.986181950981331	1.77818278045795	1.14669381326285	1.79052935505363	2.39141035392738	1.19475272216438	0.672066567959648	0.568641432543125	0.962718661854691
Merged-chr9-47580685-2	chr9	47580585	47580785	+	722.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	50333.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	0.700648096133084	0.545339466901312	0.35503378166587	0.506605015682656	0.709107229975684	0.706981145677345	0.909948906247775	0.35104854255782	0.998176808525871	0.554901086814758	1
Merged-chr17-34077775-4	chr17	34077668	34077868	+	953.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14611.0	NM_008206	15001.0	Mm.116	NM_008206	ENSMUSG00000024334	H2-Oa	H-2Oa	histocompatibility 2, O region alpha locus	protein-coding	4.34826612731077	3.97425208301457	3.7598888697789	4.47542191254849	3.56542829502049	4.22300874968561	4.27342772599339	4.93298536068267	0.211144538754242	0.643303059889286	0.982895421413318
Merged-chr7-83586253-4	chr7	83586169	83586369	+	766.799988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177695, intron 1 of 22)	intron (NM_177695, intron 1 of 22)	1338.0	NM_177695	233424.0	Mm.486619	NM_177695	ENSMUSG00000038540	Tmc3	9030203A06	transmembrane channel-like gene family 3	protein-coding	2.95985477502652	2.89368100281388	3.63089833979791	2.7177387904379	2.98405844805603	2.914884336792	3.3894338386534	2.73178281908947	-0.130849608875072	0.838358126770993	0.998431161219273
Merged-chr14-27383633-3	chr14	27383528	27383728	+	790.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027871, intron 4 of 10)	intron (NM_027871, intron 4 of 10)	22239.0	NM_001289688	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-94609388-4	chr16	94609295	94609495	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113389, intron 1 of 11)	intron (NM_001113389, intron 1 of 11)	-2024.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-87376846-4	chr3	87376732	87376932	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001136236, intron 1 of 8)	intron (NM_001136236, intron 1 of 8)	445.0	NM_178165	229499.0	Mm.255203	NM_153090	ENSMUSG00000059994	Fcrl1	A230020G22Rik|Bxmas1|Bxmh1|Bxmh1b|Fcrh1|Fcrh1l|Fcrh1s|Ifgp1	Fc receptor-like 1	protein-coding	-1.17367364971587	-1.14665061133654	-1.15856004380685	-1.16834280623128	-1.17310571790619	-1.14406978763884	-0.42938571406771	-1.16659169643457	2.89727187181404	0.396361616615464	1
Merged-chr17-64742330-2	chr17	64742274	64742474	+	751.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008549, intron 20 of 21)	intron (NM_008549, intron 20 of 21)	-24737.0	NR_105051	101202683.0	Mm.393309	NR_105051		Dreh	-	down-regulated in hepatocellular carcinoma	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-51730970-4	chr15	51730870	51731070	+	887.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	134491.0	NM_080635	68135.0	Mm.289800	NM_080635	ENSMUSG00000022312	Eif3h	1110008A16Rik|40kD|9430017H16Rik|EIF3-P40|EIF3-gamma|Eif3s3	eukaryotic translation initiation factor 3, subunit H	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-26652116-3	chr14	26651988	26652188	+	726.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007479, intron 3 of 5)	B2_Mm2|SINE|B2	13954.0	NM_007479	11843.0	Mm.297768	NM_007479	ENSMUSG00000021877	Arf4	AA407803	ADP-ribosylation factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100388813-2	chr11	100388713	100388913	+	966.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010593, intron 1 of 13)	intron (NM_010593, intron 1 of 13)	8977.0	NM_010593	16480.0	Mm.299774	NM_010593	ENSMUSG00000001552	Jup	Ctnng|D930025P04Rik|PG	junction plakoglobin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-113885750-2	chr14	113885650	113885850	+	815.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTA_Mm-int|LTR|ERVL-MaLR	-946215.0	NR_045661	75822.0	Mm.410813	NR_045661	ENSMUSG00000115320	4930524C18Rik	-	RIKEN cDNA 4930524C18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-53855132-4	chr18	53855049	53855249	+	645.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6964.0	NM_152809	70425.0	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-38023518-1	chr19	38023418	38023618	+	600.0	f1_balb.idr	intron (NM_001302140, intron 2 of 53)	intron (NM_001302140, intron 2 of 53)	20059.0	NM_001099634	226101.0	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding	1.32011939364598	1.37239235363409	0.977771301912915	0.740900300006689	1.78318077015883	0.772744077380024	0.756918860964738	1.96768408335902	1.14873923031291	0.425665951062733	0.901684336308381
Merged-chr13-101797164-4	chr13	101797055	101797255	+	870.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28938.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91845071-2	chr16	91844948	91845148	+	635.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110275, intron 19 of 28)	intron (NM_001110275, intron 19 of 28)	86582.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75515407-2	chr11	75515307	75515507	+	908.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001004157, exon 4 of 11)	exon (NM_001004157, exon 4 of 11)	1866.0	NM_001004157	380713.0	Mm.10486	NM_001004157	ENSMUSG00000038188	Scarf1	AA986099|SREC|SREC-I|mKIAA0149	scavenger receptor class F, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-121479679-2	chr9	121479579	121479779	+	785.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16015.0	NM_001284508	12424.0	Mm.2619	NM_031161	ENSMUSG00000032532	Cck	-	cholecystokinin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-88733334-2	chr9	88733234	88733434	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16B2|LTR|ERVL	-1484.0	NM_007536	12047.0	Mm.378888	NM_007536	ENSMUSG00000099974	Bcl2a1d	A1-d	B cell leukemia/lymphoma 2 related protein A1d	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-113727198-4	chr9	113727092	113727292	+	882.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-14281.0	NM_001286599	76499.0	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	0.564904700696099	0.415590364677927	0.403208653135304	1.80175498368539	0.988909110713636	0.418344325990056	0.405963180757002	1.06687767414441	-0.860707979121496	0.618432718762051	0.977853948300882
Merged-chr8-95332985-3	chr8	95332893	95333093	+	891.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133954, intron 1 of 6)	intron (NM_133954, intron 1 of 6)	709.0	NM_133954	101985.0	Mm.29069	NM_133954	ENSMUSG00000031792	Usb1	AA960436	U6 snRNA biogenesis 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-73596073-4	chr15	73595984	73596184	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357747, intron 2 of 7)	intron (NM_001357747, intron 2 of 7)	442.0	NM_001168255	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-120518318-4	chr5	120518213	120518413	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177595, intron 2 of 13)	intron (NM_001177595, intron 2 of 13)	7121.0	NM_001177594	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44335751-2	chr9	44335626	44335826	+	887.666626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_013551)	TTS (NM_013551)	1011.0	NM_010436	15270.0	Mm.245931	NM_010436	ENSMUSG00000049932	H2afx	AW228881|H2A.X|H2ax|Hist5-2ax|gammaH2ax	H2A histone family, member X	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-42795135-4	chr19	42795028	42795228	+	913.18335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081257, intron 11 of 11)	intron (NM_001081257, intron 11 of 11)	-15150.0	NM_019424	192236.0	Mm.218381	NM_019424	ENSMUSG00000025188	Hps1	6030422N11Rik|BB405864|Gm21361|Hps|ep	HPS1, biogenesis of lysosomal organelles complex 3 subunit 1	protein-coding	3.05542716416906	2.00722374754701	3.66375863799228	3.73400517853626	2.91227744414185	3.1643575506207	3.15866158882184	2.85729909917968	-0.428117378860714	0.522722187718742	0.947836760490745
Merged-chr12-73589295-4	chr12	73589184	73589384	+	991.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008856, intron 1 of 13)	L1ME2|LINE|L1	4488.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-38105652-4	chr16	38105542	38105742	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347232, intron 1 of 11)	intron (NM_001347232, intron 1 of 11)	-16382.0	NR_033221	414072.0	Mm.483602	NR_033221		BC031361	-	cDNA sequence BC031361	ncRNA	2.81584236400689	1.24796465507385	1.68608517850544	1.81025321708545	2.53383556051863	1.25493961102052	2.17082072362119	2.66736262744172	0.485044640008159	0.648008928353676	0.984971605872381
Merged-chr1-74285641-2	chr1	74285541	74285741	+	624.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001190444)	promoter-TSS (NM_001190444)	607.0	NM_001039509	56695.0	Mm.384726	NM_019999	ENSMUSG00000026179	Pnkd	2210013N15Rik|2810403H05Rik|AI854243|Brp17|MNCb-5687|MR-1|Tahccp2	paroxysmal nonkinesiogenic dyskinesia	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-120220174-4	chr10	120220083	120220283	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026617, intron 3 of 6)	intron (NM_026617, intron 3 of 6)	-6877.0	NM_025431	66225.0	Mm.291755	NM_025431	ENSMUSG00000020224	Llph	1190005P17Rik	LLP homolog, long-term synaptic facilitation (Aplysia)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85597456-2	chr12	85597356	85597556	+	606.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1649.0	NM_001205052	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-16120861-4	chr4	16120760	16120960	+	972.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42783.0	NM_138952	192656.0	Mm.112765	NM_138952	ENSMUSG00000041135	Ripk2	2210420D18Rik|CARD3|CARDIAK|CCK|D4Bwg0615e|RICK|RIP2	receptor (TNFRSF)-interacting serine-threonine kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-6259332-4	chr2	6259229	6259429	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040333, intron 3 of 6)	MTC|LTR|ERVL-MaLR	-46335.0	NM_024208	67856.0	Mm.38342	NM_024208	ENSMUSG00000039063	Echdc3	2310005D12Rik|AI662097	enoyl Coenzyme A hydratase domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115480275-4	chr5	115480161	115480361	+	912.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001167691, exon 3 of 5)	exon (NM_001167691, exon 3 of 5)	4036.0	NM_001167691	75387.0	Mm.332616	NM_133760	ENSMUSG00000029524	Sirt4	4930596O17Rik	sirtuin 4	protein-coding	-0.419133516545718	-0.0889664527618675	-0.25395285178866	-0.142317342034519	-0.41853491772233	-0.408705024288688	-0.249853687915129	-0.265794044495599	-1.33821223717105	0.563235674738233	1
Merged-chr10-67114023-4	chr10	67113923	67114123	+	997.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13235.0	NM_207221	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-14594314-2	chr1	14594214	14594414	+	695.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	161652.0	NM_001360810	17681.0	Mm.5820	NM_010827	ENSMUSG00000025930	Msc	MyoR|bHLHa22	musculin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-62509370-4	chr10	62509289	62509489	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358965, intron 1 of 3)	MTE2a|LTR|ERVL-MaLR	-1632.0	NM_011157	19073.0	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-27725198-4	chr15	27725105	27725305	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43663.0	NM_001242423	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55712034-2	chr14	55711934	55712134	+	569.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019984, intron 3 of 14)	intron (NM_019984, intron 3 of 14)	1054.0	NM_019984	21816.0	Mm.41964	NM_019984	ENSMUSG00000022218	Tgm1	2310004J08Rik|Tgase1	transglutaminase 1, K polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-93026435-3	chr16	93026340	93026540	+	945.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-200366.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-74716197-1	chr9	74716097	74716297	+	558.0	f1_c57bl6.idr	Intergenic	Intergenic	-132240.0	NR_045284	100503019.0	Mm.482658	NR_045284	ENSMUSG00000066477	Gm16551	-	predicted gene 16551	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28349084-2	chr7	28348984	28349184	+	739.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1605.0	NM_013647	20055.0	Mm.702	NM_013647	ENSMUSG00000037563	Rps16	AA420385|AI317031	ribosomal protein S16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-12384550-2	chr5	12384450	12384650	+	658.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028882, intron 1 of 17)	intron (NM_028882, intron 1 of 17)	1384.0	NM_028882	108151.0	Mm.89313	NM_028882	ENSMUSG00000040254	Sema3d	4631426B19Rik	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-128063500-4	chr7	128063384	128063584	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008401, intron 1 of 29)	intron (NM_008401, intron 1 of 29)	844.0	NM_008401	16409.0	Mm.262106	NM_008401	ENSMUSG00000030786	Itgam	CD11b/CD18|CR3|CR3A|Cd11b|F730045J24Rik|Ly-40|MAC1|Mac-1|Mac-1a	integrin alpha M	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-96120215-2	chr16	96120115	96120315	+	559.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7510.0	NM_008251	15312.0	Mm.2756	NM_008251	ENSMUSG00000040681	Hmgn1	HMG-14|Hmg14	high mobility group nucleosomal binding domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119039740-1	chr11	119039640	119039840	+	540.0	f1_balb.idr	intron (NM_013926, intron 4 of 4)	intron (NM_013926, intron 4 of 4)	1173.0	NM_013926	30951.0	Mm.99953	NM_013926	ENSMUSG00000025578	Cbx8	Pc3	chromobox 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-148164264-4	chr4	148164143	148164343	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_176848, exon 2 of 6)	exon (NM_176848, exon 2 of 6)	3575.0	NM_176848	230904.0	Mm.262287	NM_176848	ENSMUSG00000041556	Fbxo2	FBG1|FBX2|Fbs1|Fbs2|NFB42|Prpl4	F-box protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-89452050-2	chr1	89451950	89452150	+	613.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-2761.0	NM_178119	347722.0	Mm.291135	NM_178119	ENSMUSG00000055013	Agap1	Centg2|Ggap1|R75364|mKIAA1099	ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-91122861-2	chr10	91122761	91122961	+	833.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_133668, intron 2 of 7)	intron (NM_133668, intron 2 of 7)	1102.0	NM_133668	18674.0	Mm.298	NM_133668	ENSMUSG00000061904	Slc25a3	5730556H19Rik|PTP|Phc	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-109011019-4	chr3	109010929	109011129	+	953.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163567, intron 1 of 10)	intron (NM_001163567, intron 1 of 10)	16578.0	NM_001163567	329739.0	Mm.69013	NM_001163567	ENSMUSG00000040339	Fam102b	1600010D10Rik|B430201A12Rik	family with sequence similarity 102, member B	protein-coding	0.862514031546354	1.60371179772825	0.63337398701788	0.397160912289908	0.382939776393136	1.42538326551289	0.409781108139535	0.398892811698226	-0.852319616088495	0.623766940297728	0.980259659844413
Merged-chr8-106958391-4	chr8	106958298	106958498	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009229, intron 1 of 6)	intron (NM_009229, intron 1 of 6)	22648.0	NM_009229	20650.0	Mm.30228	NM_009229	ENSMUSG00000041308	Sntb2	Snt2	syntrophin, basic 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114917289-4	chr11	114917178	114917378	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17108.0	NM_001347651	217304.0	Mm.185355	NM_199221	ENSMUSG00000063193	Cd300lb	CLM-7|Clm7|Gm253|LMIR5	CD300 molecule like family member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-27675300-4	chr15	27675196	27675396	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198301, intron 1 of 6)	intron (NM_198301, intron 1 of 6)	6246.0	NM_001242424	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-73598441-4	chr12	73598340	73598540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001313977, intron 2 of 14)	intron (NM_001313977, intron 2 of 14)	13644.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99965308-4	chr7	99965205	99965405	+	732.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175388, intron 1 of 5)	intron (NM_175388, intron 1 of 5)	15153.0	NM_175388	108937.0	Mm.323087	NM_175388	ENSMUSG00000058761	Rnf169	2900057K09Rik	ring finger protein 169	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-138160501-1	chr1	138160401	138160601	+	564.0	f0_balb.idr	intron (NM_001268286, intron 2 of 28)	Lx9|LINE|L1	14625.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-116133969-4	chr6	116133868	116134068	+	906.383301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177412, exon 3 of 6)	exon (NM_177412, exon 3 of 6)	59406.0	NM_177412	330401.0	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28386187-4	chr7	28386071	28386271	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_026042, exon 4 of 4)	3' UTR (NM_026042, exon 4 of 4)	6519.0	NM_026042	67224.0	Mm.41647	NM_026042	ENSMUSG00000003444	Med29	2810405O22Rik|AU020902|Ixl	mediator complex subunit 29	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-96829540-4	chr11	96829449	96829649	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001130450)	promoter-TSS (NM_001130450)	-47.0	NM_001130450	18023.0	Mm.6743	NM_008686	ENSMUSG00000038615	Nfe2l1	AA408798|AW212678|LCR-F1|Lcrf1|NRF1|TCF-11|TCF11	nuclear factor, erythroid derived 2,-like 1	protein-coding	4.30680963011503	3.4982326893928	4.50110041636445	4.74799531856346	3.89670357154283	4.28782049155099	3.50836010606278	4.76924905220513	-0.189288048885719	0.686095692712765	0.996533206832645
Merged-chr7-38188918-1	chr7	38188818	38189018	+	591.0	f1_balb.idr	intron (NM_001085385, intron 2 of 3)	ID_B1|SINE|B4	5131.0	NM_028166	72244.0	Mm.187554	NM_028166		1600014C10Rik	AI428873	RIKEN cDNA 1600014C10 gene	protein-coding	-1.36015291771705	-1.32842431658676	-1.33874579108173	-1.34722415754512	-1.35969949349639	-1.32618761000664	-1.33640923549635	-0.791042329471244	2.42373733289067	0.484013421080845	1
Merged-chr2-44959881-2	chr2	44959781	44959981	+	626.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	63296.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135351296-2	chr4	135351196	135351396	+	610.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016799, intron 1 of 17)	B1_Mur4|SINE|Alu	1918.0	NM_016799	51796.0	Mm.1963	NM_016799	ENSMUSG00000028809	Srrm1	AA407769|POP101|Srm160	serine/arginine repetitive matrix 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30411140-2	chr7	30411109	30411309	+	651.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2579.0	NM_011662	22177.0	Mm.46301	NM_011662	ENSMUSG00000030579	Tyrobp	DAP12|KARAP|Ly83	TYRO protein tyrosine kinase binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129190671-4	chr4	129190578	129190778	+	891.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347203)	promoter-TSS (NM_001347203)	883.0	NM_134151	107271.0	Mm.145488	NM_134151	ENSMUSG00000028811	Yars	AL024047|AU018965	tyrosyl-tRNA synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124424498-3	chr5	124424396	124424596	+	856.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081203, intron 1 of 31)	intron (NM_001081203, intron 1 of 31)	1106.0	NM_001359979	243272.0	Mm.23879	NM_145631	ENSMUSG00000038095	Sbno1	9330180L10Rik|AI849128|AW557836|BC021875|Sbno|mSno1|sno	strawberry notch 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53145984-3	chr4	53145881	53146081	+	861.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 1 of 49)	MIRb|SINE|MIR	13914.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124635346-2	chr5	124635246	124635446	+	648.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_011596, intron 2 of 19)	B3A|SINE|B2	6294.0	NM_011596	21871.0	Mm.1158	NM_011596	ENSMUSG00000038023	Atp6v0a2	8430408C20Rik|AI385560|ATP6a2|AW489264|Atp6n1d|Atp6n2|C76904|ISF|J6B7|SHIF|Stv1|TJ6M|TJ6s|Tj6|V-ATPase 116 kDa|V-ATPase a2	ATPase, H+ transporting, lysosomal V0 subunit A2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-73062446-3	chr15	73062318	73062518	+	735.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1214.0	NM_001164643	76510.0	Mm.158902	NM_029640	ENSMUSG00000047921	Trappc9	1810044A24Rik|2900005P22Rik|4632408O18Rik|Ibp|Nibp|TRS130|mKIAA1882	trafficking protein particle complex 9	protein-coding	1.99601887554478	2.15656383684991	2.36505366246038	2.44494719558204	1.40486962098282	1.08947930428271	1.31657373276491	1.04167941936225	-3.4892932844519	0.00390825043013702	0.0550797047699106
Merged-chr16-5306798-4	chr16	5306713	5306913	+	923.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-50857.0	NM_027446	70511.0	Mm.45780	NM_027446	ENSMUSG00000022544	Eef2kmt	5730409G15Rik|Fam86|Fam86a|eEF2-KMT	eukaryotic elongation factor 2 lysine methyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-65930471-3	chr3	65930379	65930579	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27770.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	2.32472453577024	1.24905490777765	2.52867001705111	1.79163002317522	2.34476093182478	1.2553859443726	2.54924024981431	1.80078877006481	0.0394142395771376	0.970342206365119	0.998431161219273
Merged-chr1-89524638-4	chr1	89524577	89524777	+	920.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037136, intron 1 of 16)	intron (NM_001037136, intron 1 of 16)	69866.0	NM_001037136	347722.0	Mm.291135	NM_178119	ENSMUSG00000055013	Agap1	Centg2|Ggap1|R75364|mKIAA1099	ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-88547411-4	chr9	88547318	88547518	+	822.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001142943)	promoter-TSS (NM_001142943)	-602.0	NM_001163061	71640.0	Mm.259988	NM_001142943	ENSMUSG00000032425	Zfp949	4930422I07Rik|Nczf	zinc finger protein 949	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-25272129-4	chr15	25272037	25272237	+	892.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	141627.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-46485833-4	chr4	46485713	46485913	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3516.0	NM_053179	94181.0	Mm.249349	NM_053179	ENSMUSG00000028334	Nans	4632418E04Rik|BB056474|Sas	N-acetylneuraminic acid synthase (sialic acid synthase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-79319486-4	chr12	79319388	79319588	+	976.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 5 of 10)	L1MEc|LINE|L1	22137.0	NM_001252562	19363.0	Mm.341756	NM_009014	ENSMUSG00000059060	Rad51b	AI553500|R51H2|Rad51l1|mREC2	RAD51 paralog B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-94818792-4	chr9	94818693	94818893	+	989.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177909, intron 5 of 15)	intron (NM_177909, intron 5 of 15)	66964.0	NR_106116	102465763.0		NR_106116	ENSMUSG00000098251	Mir7656	Gm27614|mmu-mir-7656	microRNA 7656	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-79783199-2	chr10	79783099	79783299	+	879.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_031380)	TTS (NM_031380)	5786.0	NM_001042710	73106.0	Mm.491308	NM_001042710	ENSMUSG00000020323	Prss57	2900092M14Rik|GLGL782|NSP4|Prssl1|UNQ782	protease, serine 57	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141327682-4	chr7	141327577	141327777	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001282076)	promoter-TSS (NM_001282076)	48.0	NM_016874	54006.0	Mm.28392	NM_016874	ENSMUSG00000058886	Deaf1	AU042387|C230009B13Rik|NUDR	DEAF1, transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3769613-2	chr4	3769514	3769714	+	883.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 10 of 12)	intron (NM_001111096, intron 10 of 12)	54650.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	0.0421556134229023	-0.324220441195005	0.441162685589619	-0.332112123790013	-0.188391117245314	-0.323216506255967	-0.327692238019826	-0.331511573220155	-2.82537476674491	0.248034657000324	1
Merged-chr2-29004177-4	chr2	29004071	29004271	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166705, intron 1 of 5)	intron (NM_001166705, intron 1 of 5)	50895.0	NM_001166705	329375.0	Mm.425079	NM_001085514	ENSMUSG00000079502	Cfap77	1700101E01Rik|Gm823	cilia and flagella associated protein 77	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-61990056-2	chr11	61989956	61990156	+	661.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310526, intron 1 of 7)	intron (NM_001310526, intron 1 of 7)	33293.0	NM_001310526	432572.0	Mm.438022	NM_001029936	ENSMUSG00000042331	Specc1	2810012G08Rik|B230396K10Rik|Cytsb	sperm antigen with calponin homology and coiled-coil domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-100024065-3	chr12	100023949	100024149	+	871.488892	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164426, intron 2 of 2)	intron (NM_001164426, intron 2 of 2)	59550.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153586736-4	chr2	153586636	153586836	+	867.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46045.0	NM_001195390	99311.0	Mm.294478	NM_133850	ENSMUSG00000056941	Commd7	2310010I22Rik|AW060956|mU3	COMM domain containing 7	protein-coding	2.7179370053976	1.97392315054892	1.53823682414734	2.23639450331461	2.5525847894558	1.32948524555471	2.20337089229388	2.13525692770844	-0.15054156433673	0.877872836045537	0.998431161219273
Merged-chr16-36660467-3	chr16	36660350	36660550	+	870.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019388, intron 1 of 7)	B1_Mus1|SINE|Alu	5627.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-66931758-4	chr10	66931648	66931848	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11364.0	NR_138561	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44851861-2	chr7	44851761	44851961	+	565.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253920, intron 1 of 4)	PB1D10|SINE|Alu	1854.0	NM_001253920	67605.0	Mm.148007	NM_026270	ENSMUSG00000011096	Akt1s1	1110012J22Rik|AI227026|Lobe|Lobel|PRAS40	AKT1 substrate 1 (proline-rich)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167692152-5	chr2	167692144	167692344	+	935.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015500, intron 1 of 1)	intron (NR_015500, intron 1 of 1)	1067.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-71318793-2	chr2	71318675	71318875	+	555.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172436, intron 5 of 17)	intron (NM_172436, intron 5 of 17)	48779.0	NM_172436	78830.0	Mm.30928	NM_172436	ENSMUSG00000027010	Slc25a12	2610002D09Rik|AI839531|B230107K20Rik|BB129864	solute carrier family 25 (mitochondrial carrier, Aralar), member 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-17409773-3	chr14	17409685	17409885	+	656.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-251175.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-25047994-4	chr15	25047859	25048059	+	887.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	365805.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-108461264-4	chr5	108461145	108461345	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172716)	promoter-TSS (NM_172716)	-87.0	NM_172716	69587.0	Mm.261218	NM_172716	ENSMUSG00000033623	Pcgf3	2310035N15Rik|AI662857|D630042K08Rik|DONG1|E430039C14|RNF3A|Rnf3	polycomb group ring finger 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-28316116-5	chr15	28316041	28316241	+	750.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133365, intron 35 of 78)	intron (NM_133365, intron 35 of 78)	112375.0	NM_133365	110082.0	Mm.248464	NM_133365	ENSMUSG00000022262	Dnah5	AU022615|Dnahc5|Mdnah5|b2b1134Clo|b2b1154Clo|b2b1537Clo|b2b1565Clo|b2b3491Clo|b2b601Clo|mKIAA1603	dynein, axonemal, heavy chain 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-40588495-4	chr19	40588401	40588601	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019698)	promoter-TSS (NM_019698)	-38.0	NM_153554	56454.0	Mm.233117	NM_019698	ENSMUSG00000025007	Aldh18a1	2810433K04Rik|AI429789|Pycs	aldehyde dehydrogenase 18 family, member A1	protein-coding	5.18000120489554	5.92601164088477	5.63689160769642	6.1703421628872	5.19000084547784	6.05443306476658	5.75037555126425	6.00624498962807	0.0136821210477963	0.962818067527552	0.998431161219273
Merged-chr2-30725806-2	chr2	30725706	30725906	+	603.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4596.0	NR_037272	100526499.0		NR_037272	ENSMUSG00000093091	Mir3089	mir-3089|mmu-mir-3089	microRNA 3089	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-155097426-4	chr1	155097327	155097527	+	730.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010500, exon 1 of 1)	3' UTR (NM_010500, exon 1 of 1)	2209.0	NM_010500	15939.0	Mm.12246	NM_010500	ENSMUSG00000056708	Ier5	-	immediate early response 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-79029074-2	chr15	79028974	79029174	+	752.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008197, exon 1 of 1)	exon (NM_008197, exon 1 of 1)	862.0	NM_008197	14958.0	Mm.24350	NM_008197	ENSMUSG00000096210	H1f0	D130017D06Rik|H1(0)|H1fv	H1 histone family, member 0	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-134539359-2	chr4	134539259	134539459	+	926.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_029100, exon 12 of 12)	3' UTR (NM_029100, exon 12 of 12)	-3972.0	NM_029759	76824.0	Mm.30153	NM_029759	ENSMUSG00000046671	Mtfr1l	2410166I05Rik|AI480750|Fam54b	mitochondrial fission regulator 1-like	protein-coding	-0.928940593673113	0.15260240890053	-0.919403370180166	-0.922956985378252	-0.928043701396376	-0.905131160573435	-0.918394354967459	-0.922333464130162	-3.4757377177308	0.248847205590595	1
Merged-chr13-4609206-4	chr13	4609121	4609321	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018859)	promoter-TSS (NM_018859)	-57.0	NM_018859	56043.0	Mm.251908	NM_018859	ENSMUSG00000045410	Akr1e1	1810061I10Rik|Akr1e2	aldo-keto reductase family 1, member E1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-96360362-2	chr9	96360262	96360462	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357213, intron 1 of 7)	intron (NM_001357213, intron 1 of 7)	3353.0	NM_001357213	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44952201-4	chr7	44952091	44952291	+	904.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077591, intron 5 of 10)	intron (NM_001077591, intron 5 of 10)	8951.0	NM_011651	22116.0	Mm.84502	NM_011651	ENSMUSG00000059891	Tsks	Stk22s1|Tssks1	testis-specific serine kinase substrate	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-63990085-3	chr9	63989982	63990182	+	765.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008542, intron 3 of 3)	intron (NM_008542, intron 3 of 3)	31977.0	NM_008542	17130.0	Mm.325757	NM_008542	ENSMUSG00000036867	Smad6	Madh6|b2b390Clo	SMAD family member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-39199964-2	chr18	39199854	39200054	+	856.458374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361073, intron 11 of 21)	intron (NM_001361073, intron 11 of 21)	206809.0	NM_175164	71302.0	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding	1.74063656418567	2.22066486045336	2.5094258859142	1.1053186494232	1.46906616669977	1.15877433185194	2.04144980969648	2.3684760866374	-0.381841253520799	0.734086742904408	0.998431161219273
Merged-chr7-24975868-2	chr7	24975768	24975968	+	644.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-3140.0	NM_010261	14470.0	Mm.22473	NM_010261	ENSMUSG00000003380	Rabac1	2310040I06Rik|Gbpap1|PRA1|prenylin	Rab acceptor 1 (prenylated)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-62654132-3	chr4	62654001	62654201	+	793.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134257, intron 10 of 15)	intron (NM_134257, intron 10 of 15)	-19873.0	NM_001310706	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127206510-2	chr7	127206410	127206610	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144522, intron 1 of 8)	intron (NM_144522, intron 1 of 8)	1958.0	NM_144522	68449.0	Mm.41420	NM_144522	ENSMUSG00000042492	Tbc1d10b	1110003P22Rik|C87963	TBC1 domain family, member 10b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128436539-2	chr2	128436439	128436639	+	634.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7188.0	NR_028590	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-76075568-1	chr5	76075468	76075668	+	583.0	f0_balb.idr	Intergenic	Intergenic	-64705.0	NM_020611	57357.0	Mm.289446	NM_020611	ENSMUSG00000029233	Srd5a3	1110025P14Rik|A430076C09|AV364670|AW987574|D730040M03Rik|H5ar|S5AR 3|Srd5a2l	steroid 5 alpha-reductase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-102204726-4	chr7	102204620	102204820	+	944.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001287166, intron 1 of 19)	MTD|LTR|ERVL-MaLR	5147.0	NM_001287167	269966.0	Mm.439800	NM_022979	ENSMUSG00000063550	Nup98	4732457F17|AI849286|Nup96	nucleoporin 98	protein-coding	2.42627641942336	1.46852577194836	2.92000997170999	2.19294651234	2.79003783263019	2.75054865857706	3.23777903904491	1.86921270395163	0.785433343269991	0.359841227788267	0.856306289008338
Merged-chr3-144705296-4	chr3	144705180	144705380	+	775.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001282037, intron 5 of 10)	intron (NM_001282037, intron 5 of 10)	15055.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41992682-3	chr19	41992534	41992734	+	798.455566	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145500, intron 1 of 2)	B3|SINE|B2	10871.0	NM_145500	226122.0	Mm.22948	NM_145500	ENSMUSG00000025171	Ubtd1	BC016129	ubiquitin domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100298439-3	chr11	100298337	100298537	+	767.472229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21512.0	NM_011508	20918.0	Mm.13886	NM_011508	ENSMUSG00000035530	Eif1	Sui1-rs1	eukaryotic translation initiation factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152168550-4	chr1	152168421	152168621	+	895.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-78201.0	NM_197990	69399.0	Mm.278031	NM_197990	ENSMUSG00000032666	1700025G04Rik	2610510E02Rik|2900042O04Rik	RIKEN cDNA 1700025G04 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-108345689-7	chr9	108345801	108346001	+	805.476196	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-1930.0	NM_001311157	22258.0	Mm.3974	NM_011678	ENSMUSG00000032612	Usp4	F730026I20Rik|Unp|mKIAA4155	ubiquitin specific peptidase 4 (proto-oncogene)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72146602-3	chr6	72146496	72146696	+	720.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001035228, intron 4 of 6)	intron (NM_001035228, intron 4 of 6)	-23399.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-68113374-4	chr7	68113274	68113474	+	817.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010513, intron 2 of 20)	AT_rich|Low_complexity|Low_complexity	150859.0	NM_030101	78444.0	Mm.425468	NM_030101	ENSMUSG00000030553	Pgpep1l	C330024D12Rik	pyroglutamyl-peptidase I-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91347587-4	chr16	91347470	91347670	+	957.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25213.0	NM_010509	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-100106497-4	chr12	100106410	100106610	+	925.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5821.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152531759-6	chr1	152531568	152531768	+	977.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 13 of 17)	intron (NM_016846, intron 13 of 17)	93549.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-115582646-2	chr3	115582546	115582746	+	647.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	132409.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53384949-4	chr4	53384833	53385033	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55480.0	NM_001159633	100434.0	Mm.482207	NM_133891	ENSMUSG00000028412	Slc44a1	2210409B22Rik|4833416H08Rik|AW547365|CHTL1|CTL1|Cdw92	solute carrier family 44, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-11787108-3	chr19	11787009	11787209	+	546.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011502, intron 5 of 10)	intron (NM_011502, intron 5 of 10)	16694.0	NM_025606	94063.0	Mm.203928	NM_025606	ENSMUSG00000024683	Mrpl16	2310039D06Rik	mitochondrial ribosomal protein L16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-123949340-4	chr8	123949246	123949446	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172288)	promoter-TSS (NM_172288)	-81.0	NM_172288	234865.0	Mm.267812	NM_172288	ENSMUSG00000039509	Nup133	mermaid	nucleoporin 133	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-64775666-4	chr9	64775568	64775768	+	965.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35343.0	NM_001162917	102442.0	Mm.222473	NM_176935	ENSMUSG00000053641	Dennd4a	AI115600|AI851943|F730015K02Rik	DENN/MADD domain containing 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-61064884-2	chr10	61064784	61064984	+	832.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24447.0	NM_025273	13180.0	Mm.39473	NM_025273	ENSMUSG00000020098	Pcbd1	Dcoh|Pcbd|Pcd|Phs	pterin 4 alpha carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25652563-3	chr7	25652462	25652662	+	861.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007533, intron 1 of 8)	intron (NM_007533, intron 1 of 8)	6199.0	NM_007533	12039.0	Mm.25848	NM_007533	ENSMUSG00000060376	Bckdha	-	branched chain ketoacid dehydrogenase E1, alpha polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-22665488-2	chr11	22665388	22665588	+	668.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	153205.0	NM_153596	103765.0	Mm.221274	NM_153596	ENSMUSG00000049904	Tmem17	AI503894|AW049890	transmembrane protein 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3642217-2	chr4	3642182	3642382	+	721.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-14224.0	NR_040643	70143.0	Mm.417835	NR_040643	ENSMUSG00000085394	2210414B05Rik	-	RIKEN cDNA 2210414B05 gene	ncRNA	-1.8429182434137	-1.8129848525291	-1.82203695700074	-1.54461076807193	-1.84081697472045	-1.81102322372834	-1.81998775896484	-1.82814164409203	-1.43114970378833	0.684630132144154	1
Merged-chr11-51681773-4	chr11	51681613	51681813	+	848.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6921.0	NM_025319	66050.0	Mm.35693	NM_025319	ENSMUSG00000007777	0610009B22Rik	-	RIKEN cDNA 0610009B22 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115881241-2	chr11	115881141	115881341	+	658.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18898.0	NM_183259	66528.0	Mm.275740	NM_183259	ENSMUSG00000048442	Smim5	2210020M01Rik	small integral membrane protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-104315779-3	chr12	104315675	104315875	+	923.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001101472, intron 1 of 3)	intron (NM_001101472, intron 1 of 3)	1205.0	NM_001101472	238395.0	Mm.436975	NM_001101472	ENSMUSG00000079013	Serpina3j	AI506554|EG238395|Gm4931	serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 3J	protein-coding	2.74038809818301	3.16048330544977	1.73205461770733	1.68492857715314	2.59060517743393	3.18354250203272	2.32180525411915	2.9845899798455	0.609838613435684	0.460722791676945	0.920953234475195
Merged-chr10-105313190-2	chr10	105313090	105313290	+	674.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_177368, intron 7 of 11)	Tigger12c|DNA|TcMar-Tigger	261289.0	NM_177368	278279.0	Mm.25225	NM_177368	ENSMUSG00000036019	Tmtc2	8430438D04Rik|D330034A10Rik	transmembrane and tetratricopeptide repeat containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-6389147-4	chr11	6389050	6389250	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5975.0	NM_001005867	52915.0	Mm.1144	NM_028601	ENSMUSG00000041164	Zmiz2	Zimp7	zinc finger, MIZ-type containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-136143768-4	chr4	136143675	136143875	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008321)	promoter-TSS (NM_008321)	-47.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-52004240-4	chr11	52004148	52004348	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153785)	promoter-TSS (NM_153785)	27.0	NM_001166653	213084.0	Mm.280557	NM_153785	ENSMUSG00000020389	Cdkl3	AI852479|B230379H01Rik	cyclin-dependent kinase-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-35298911-1	chr12	35298811	35299011	+	725.0	f0_balb.idr	Intergenic	B3A|SINE|B2	-104014.0	NR_030449	751520.0		NR_030449	ENSMUSG00000076253	Mir680-3	Mirn680-3	microRNA 680-3	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-99468203-1	chr10	99468103	99468303	+	551.0	f0_balb.idr	Intergenic	Intergenic	-140968.0	NR_038019	100504202.0	Mm.403801	NR_038019	ENSMUSG00000111962	Gm20110	-	predicted gene, 20110	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-46832118-4	chr14	46832005	46832205	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360455)	promoter-TSS (NM_001360455)	-29.0	NM_001360454	68755.0	Mm.343809	NM_026832	ENSMUSG00000055128	Cgrrf1	1110038G02Rik|1810009H17Rik|CGR19	cell growth regulator with ring finger domain 1	protein-coding	5.23009573463084	4.28642633286371	5.38040486114836	5.51230945446317	5.55086500891126	4.75497689010505	4.70700588217906	5.02151549438485	-0.142367038726902	0.690465651724386	0.996647510311426
Merged-chr4-140153413-2	chr4	140153337	140153537	+	804.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_198610, intron 2 of 9)	intron (NM_198610, intron 2 of 9)	10564.0	NR_153821	102636673.0	Mm.449180	NR_153821		Gm13029	Gm33676	predicted gene 13029	ncRNA	2.91588448829463	2.49708332583409	1.44302295485503	1.66410973069123	2.87285508336496	2.64580496054859	2.86720074929991	2.9429051311299	1.10418208031243	0.193575677915478	0.673158288239418
Merged-chr2-170326999-4	chr2	170326901	170327101	+	962.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29360.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-83306928-4	chr4	83306836	83307036	+	944.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027238, intron 1 of 19)	RSINE1|SINE|B4	17253.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-65172764-4	chr12	65172650	65172850	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172578)	promoter-TSS (NM_172578)	-170.0	NM_172578	217653.0	Mm.21144	NM_172578	ENSMUSG00000047534	Mis18bp1	6720403H11|C79407|Knl2|mKIAA1903	MIS18 binding protein 1	protein-coding	5.44552361456625	5.6206102711566	6.53674538929489	5.3810139346707	6.02833949177548	6.1191143642373	6.39751724011395	5.84801431301112	0.311734241137258	0.279076233537857	0.782570111402433
Merged-chr2-166471602-5	chr2	166471492	166471692	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24141.0	NR_015558	319684.0	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-12574480-3	chr16	12574375	12574575	+	730.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA9|LINE|L1	-236915.0	NR_040507	75493.0	Mm.396146	NR_040507	ENSMUSG00000101565	1700003L19Rik	-	RIKEN cDNA 1700003L19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80425714-4	chr7	80425605	80425805	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-20269.0	NM_001081454	18550.0	Mm.5241	NM_011046	ENSMUSG00000030530	Furin	9130404I01Rik|Fur|PACE|Pcsk3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding	4.50850570058457	3.75735999151068	3.79434854271693	3.76223862832733	4.06439128418514	4.16738944370239	3.82357819274053	4.09692578213739	0.0458970833056469	0.919286244032654	0.998431161219273
Merged-chr1-20939239-4	chr1	20939150	20939350	+	858.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028829, exon 3 of 3)	3' UTR (NM_028829, exon 3 of 3)	-12376.0	NM_027974	71877.0	Mm.29178	NM_027974	ENSMUSG00000041809	Efhc1	1700029F22Rik|mRib72-1|myoclonin1	EF-hand domain (C-terminal) containing 1	protein-coding	3.7067496333441	3.86201135494454	3.37963119412925	3.17510566266126	4.26860448265372	4.45294979185922	4.50314554232004	2.95397475463952	0.861071485020412	0.100469251652345	0.493266535976181
Merged-chr14-27351198-3	chr14	27351103	27351303	+	939.900024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289687, intron 1 of 9)	intron (NM_001289687, intron 1 of 9)	-10186.0	NM_001289688	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	2.76000240882346	2.41162031162572	1.64340316764202	1.60227892461864	2.16202716004476	2.42978348375804	3.20833528387505	2.3931600561682	0.860516834368203	0.328180740715974	0.830597486712967
Merged-chr17-34944111-2	chr17	34944011	34944211	+	813.849976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	6897.0	NR_028527	100217427.0		NR_028527	ENSMUSG00000093009	Snord52	MBII-297	small nucleolar RNA, C/D box 52	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-102605954-3	chr4	102605839	102606039	+	852.572205	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001177980, exon 10 of 10)	3' UTR (NM_001177980, exon 10 of 10)	16096.0	NM_001177981	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	0.551031313035126	0.606960696027633	0.589295098840211	0.575246685259781	0.945578519599157	1.69094752028297	2.12749699007933	1.31288134125337	5.14737906196099	0.000908173868740556	0.0179608847425536
Merged-chr4-99120518-4	chr4	99120420	99120620	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026082, intron 1 of 47)	CpG	395.0	NM_001290636	67299.0	Mm.260623	NM_026082	ENSMUSG00000028556	Dock7	3110056M06Rik|Gm430	dedicator of cytokinesis 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-38533151-2	chr6	38533051	38533251	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1710.0	NM_025363	66117.0	Mm.158971	NM_025363	ENSMUSG00000019689	Fmc1	1110001J03Rik	formation of mitochondrial complex V assembly factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-55482047-2	chr13	55481947	55482147	+	596.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177371, intron 5 of 14)	intron (NM_001177371, intron 5 of 14)	-4271.0	NR_105909	102465569.0		NR_105909	ENSMUSG00000098341	Mir6944	Gm27710|mmu-mir-6944	microRNA 6944	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139723947-2	chr5	139723847	139724047	+	740.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_174850, intron 1 of 16)	B1_Mus2|SINE|Alu	12386.0	NM_174850	231830.0	Mm.240510	NM_174850	ENSMUSG00000036718	Micall2	A930021H16Rik|JRAB|MICAL-L2|mFLJ00139	MICAL-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-16332994-2	chr2	16332894	16333094	+	546.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1C|Other|Other	-23310.0	NM_026162	67448.0	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-39008069-4	chr2	39007968	39008168	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028809)	promoter-TSS (NM_028809)	-71.0	NM_028809	74192.0	Mm.38155	NM_028809	ENSMUSG00000026755	Arpc5l	2010015J01Rik|AI852867|ARC16-2|AW555592|AW742746	actin related protein 2/3 complex, subunit 5-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-65795526-3	chr18	65795419	65795619	+	680.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5059.0	NM_025468	66286.0	Mm.27800	NM_025468	ENSMUSG00000024516	Sec11c	1810029G24Rik|Sec11l3	SEC11 homolog C, signal peptidase complex subunit	protein-coding	1.35378216936824	2.06818970404219	1.46685268986556	1.42531413041854	1.08576256816147	1.18525934614236	1.32908847211086	1.43264785464427	-1.31790779714521	0.259077571459659	0.75927260363863
Merged-chr12-111762085-2	chr12	111761985	111762185	+	597.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361610, intron 1 of 14)	intron (NM_001361610, intron 1 of 14)	3217.0	NM_001025361	16593.0	Mm.278357	NM_008450	ENSMUSG00000021288	Klc1	AI874768|Kns2	kinesin light chain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-14515084-1	chr5	14514984	14515184	+	617.0	f0_balb.idr	5' UTR (NM_011995, exon 1 of 25)	5' UTR (NM_011995, exon 1 of 25)	166.0	NM_001110796	26875.0	Mm.146275	NM_011995	ENSMUSG00000061601	Pclo	Acz|Pico	piccolo (presynaptic cytomatrix protein)	protein-coding	0.366024540282153	0.386755354960781	0.82663287700236	0.535863241017388	0.841144111033378	0.388286771032437	0.836227656998138	0.90556203118852	1.36437795810158	0.438391203481292	1
Merged-chr13-3907382-3	chr13	3907295	3907495	+	899.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019671, intron 3 of 11)	intron (NM_019671, intron 3 of 11)	10825.0	NM_019671	56349.0	Mm.22261	NM_019671	ENSMUSG00000021215	Net1	Net1a|mNET1	neuroepithelial cell transforming gene 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-108086373-2	chr3	108086273	108086473	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346665)	promoter-TSS (NM_001346665)	293.0	NM_028779	109674.0	Mm.274335	NM_028779	ENSMUSG00000027889	Ampd2	1200014F01Rik|AI552571|Ampd-2|m4521Dajl	adenosine monophosphate deaminase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55794906-2	chr14	55794806	55795006	+	672.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-6049.0	NM_001164108	56532.0	Mm.46612	NM_019955	ENSMUSG00000022221	Ripk3	2610528K09Rik|AW107945|Rip3	receptor-interacting serine-threonine kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19000703-2	chr7	19000603	19000803	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_145579, exon 3 of 3)	exon (NM_145579, exon 3 of 3)	-3362.0	NM_178757	272359.0	Mm.274237	NM_178757	ENSMUSG00000044030	Irf2bp1	6330414O09Rik|C530033F24	interferon regulatory factor 2 binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-28619080-2	chr13	28618980	28619180	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045054, intron 5 of 7)	L1MEg|LINE|L1	91793.0	NR_105787	102466635.0		NR_105787	ENSMUSG00000099158	Mir6368	Gm27800|mmu-mir-6368	microRNA 6368	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-37868010-6	chr1	37867924	37868124	+	777.444458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2726.0	NM_001290720	211484.0	Mm.332756	NM_207228	ENSMUSG00000060771	Tsga10	4933432N21Rik|AI843383|Gm217|Mtsga10	testis specific 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59774214-3	chr15	59774105	59774305	+	940.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20754.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-27335957-4	chr14	27335832	27336032	+	993.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289687)	promoter-TSS (NM_001289687)	-105.0	NM_001289687	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-85619597-2	chr13	85619497	85619697	+	716.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-330111.0	NM_145452	218397.0	Mm.259653	NM_145452	ENSMUSG00000021549	Rasa1	Gap|RasGAP|Rasa	RAS p21 protein activator 1	protein-coding	-1.05877568042897	-1.03501312238488	-1.04817210678232	-1.05426068996071	-1.05810152525527	-1.03216151557194	-0.188696606725984	-1.05378786495764	3.16074139804981	0.330468818528456	1
Merged-chr9-107285144-1	chr9	107285044	107285244	+	636.0	f1_c57bl6.idr	intron (NM_001316691, intron 1 of 7)	intron (NM_001316691, intron 1 of 7)	4252.0	NM_001316691	102626.0	Mm.222612	NM_178907	ENSMUSG00000032577	Mapkapk3	3PK|AI874665|MAPKAP-K3|MAPKAP3|MK-3|MK3|MapkKapk3	mitogen-activated protein kinase-activated protein kinase 3	protein-coding	1.61593558903141	2.38214173226554	2.30070301293571	1.69383022151978	1.77987191016306	2.40002094035311	1.75107848174868	2.74829865886505	0.500634903246288	0.592157695393007	0.97015200361199
Merged-chr11-5058556-2	chr11	5058456	5058656	+	644.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145216, intron 1 of 2)	intron (NM_145216, intron 1 of 2)	428.0	NM_145216	75668.0	Mm.374836	NM_145216	ENSMUSG00000034209	Rasl10a	2210403B10Rik|AI852688	RAS-like, family 10, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-20111959-1	chr13	20111859	20112059	+	567.0	f1_c57bl6.idr	intron (NM_080288, intron 1 of 21)	(TG)n|Simple_repeat|Simple_repeat	21452.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	1.46134347270779	1.5148101016632	0.924154632586518	1.84568764361454	1.22649640053964	1.52656645651832	0.927680100337291	1.85632412729702	-0.153949114526894	0.903930797091974	0.998431161219273
Merged-chr6-87706496-2	chr6	87706396	87706596	+	655.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15649.0	NR_045482	613264.0	Mm.480195	NR_045482	ENSMUSG00000089997	1810020O05Rik	-	Riken cDNA 1810020O05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-6174635-4	chr7	6174537	6174737	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146024, intron 2 of 4)	B2_Mm2|SINE|B2	2124.0	NM_001146024	72667.0	Mm.274089	NM_028316	ENSMUSG00000044876	Zfp444	2810031J10Rik|6230401O10Rik|mFLJ00134	zinc finger protein 444	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98673331-4	chr11	98673209	98673409	+	910.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021347, intron 9 of 11)	intron (NM_021347, intron 9 of 11)	8958.0	NM_021347	57911.0	Mm.458085	NM_021347	ENSMUSG00000017204	Gsdma	BB149167|Gsdm|Gsdm1|Gsdma1|H312E	gasdermin A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-155733394-4	chr4	155733276	155733476	+	617.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026899, intron 4 of 4)	intron (NM_026899, intron 4 of 4)	-1428.0	NM_001101506	381582.0	Mm.379515	NM_001101506	ENSMUSG00000084845	Tmem240	EG381582|Gm5151	transmembrane protein 240	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-102976854-2	chr15	102976754	102976954	+	655.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008272)	promoter-TSS (NM_008272)	-178.0	NM_008272	15427.0	Mm.4765	NM_008272	ENSMUSG00000036139	Hoxc9	Hox-3.2	homeobox C9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-118179708-4	chr4	118179638	118179838	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161823, intron 1 of 21)	intron (NM_001161823, intron 1 of 21)	305.0	NM_172382	230674.0	Mm.234234	NM_172382	ENSMUSG00000033326	Kdm4a	D4Ertd222e|JHDM3A|Jmjd2|Jmjd2a|mKIAA0677	lysine (K)-specific demethylase 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-9342952-2	chr14	9342852	9343052	+	822.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-541143.0	NR_030680	100042415.0	Mm.235938	NR_030680	ENSMUSG00000089686	Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-99632358-2	chr5	99632258	99632458	+	904.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 1 of 3)	intron (NR_030692, intron 1 of 3)	96702.0	NR_030692	319818.0	Mm.295233	NR_030692	ENSMUSG00000089809	A930011G23Rik	-	RIKEN cDNA A930011G23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-9494004-3	chr18	9493896	9494096	+	965.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43842.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-45855730-4	chr5	45855615	45855815	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359873, intron 1 of 4)	intron (NM_001359873, intron 1 of 4)	837.0	NM_001359872	209707.0	Mm.71498	NM_172153	ENSMUSG00000015882	Lcorl	Mlr1	ligand dependent nuclear receptor corepressor-like	protein-coding	3.02594813671616	1.68523241106811	3.19497379037717	3.64937700805697	3.50034049182652	2.76171085658628	2.79949769981736	3.35652693145354	0.132853877564057	0.853191680553501	0.998431161219273
Merged-chr15-99702502-4	chr15	99702415	99702615	+	929.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031842, intron 1 of 12)	intron (NM_031842, intron 1 of 12)	228.0	NM_031842	83797.0	Mm.273756	NM_031842	ENSMUSG00000023018	Smarcd1	AA407987|Baf60a|D15Kz1	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99255458-2	chr7	99255358	99255558	+	594.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11760.0	NR_103487	381967.0	Mm.261763	NR_103487	ENSMUSG00000097015	Gm26705	-	predicted gene, 26705	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-53387464-5	chr9	53387413	53387613	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_212445, intron 1 of 7)	URR1A|DNA|hAT-Charlie	3490.0	NM_212445	68304.0	Mm.427519	NM_212445	ENSMUSG00000034487	Kdelc2	2010004J24Rik|4833410J10Rik|AW549401	KDEL (Lys-Asp-Glu-Leu) containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-59372881-3	chr4	59372806	59373006	+	773.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163288, intron 8 of 16)	intron (NM_001163288, intron 8 of 16)	65727.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-115980864-4	chr4	115980787	115980987	+	904.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37037.0	NM_010173	14073.0	Mm.256025	NM_010173	ENSMUSG00000034171	Faah	AW412498	fatty acid amide hydrolase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-94954956-1	chr8	94954856	94955056	+	569.0	f0_balb.idr	Intergenic	Intergenic	-22153.0	NM_001198894	14766.0	Mm.290834	NM_018882	ENSMUSG00000031785	Adgrg1	Cyt28|Gpr56|TM7LN4|TM7XN1	adhesion G protein-coupled receptor G1	protein-coding	3.06132791336074	3.43045996049372	2.17073133418702	3.88785467475556	3.16286488412823	2.64541224562694	3.34293029168542	2.96968152596219	-0.377521747817243	0.570977618525437	0.962868434236805
Merged-chr15-51449845-4	chr15	51449739	51449939	+	901.724976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-54229.0	NR_045092	100502643.0	Mm.131987	NR_045092	ENSMUSG00000115654	Gm19303	-	predicted gene, 19303	ncRNA	3.66604987521359	3.89577438511045	4.06460630092978	3.53173025400025	2.95671946871069	3.61729607124596	3.21358166500193	2.88265946314185	-0.944859169410859	0.0783102421553433	0.426171583933992
Merged-chr2-137869759-3	chr2	137869660	137869860	+	728.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-386824.0	NM_001025431	228662.0	Mm.153405	NM_145534	ENSMUSG00000062098	Btbd3	mKIAA0952	BTB (POZ) domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-4936598-2	chr7	4936498	4936698	+	837.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_173008, exon 10 of 14)	exon (NM_173008, exon 10 of 14)	10754.0	NM_173008	269855.0	Mm.44190	NM_173008	ENSMUSG00000035279	Ssc5d	A430110N23Rik|S5D-SRCRB	scavenger receptor cysteine rich family, 5 domains	protein-coding	-1.58994551673671	-1.55912852307891	-1.56844783632235	-1.57610299769523	-1.18549093183599	-1.55710898902261	-1.56633814807757	-1.57473272746952	1.78703309985663	0.610309988231842	1
Merged-chr17-34293001-1	chr17	34292901	34293101	+	555.0	f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-5230.0	NM_010378	14960.0	Mm.235338	NM_010378	ENSMUSG00000036594	H2-Aa	Aalpha|H-2Aa|H2Aa|I-Aalpha|IAalpha|Ia-1|Ia1	histocompatibility 2, class II antigen A, alpha	protein-coding	1.91903034752593	4.22126321058937	3.77054606798946	3.32187915107251	2.91316844018733	3.79379107091137	1.59438233551017	3.25663528842885	-0.677268627035528	0.379536511798862	0.871899780487614
Merged-chr6-52213407-3	chr6	52213268	52213468	+	790.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010452)	promoter-TSS (NM_010452)	-301.0	NM_010452	15400.0	Mm.71533	NM_010452	ENSMUSG00000079560	Hoxa3	Hox-1.5|Mo-10	homeobox A3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97489777-3	chr11	97489679	97489879	+	813.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021493, intron 15 of 18)	intron (NM_021493, intron 15 of 18)	10561.0	NM_001289118	100141474.0	Mm.482426	NM_001289118	ENSMUSG00000047988	4933428G20Rik	-	RIKEN cDNA 4933428G20 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-79695394-4	chr10	79695276	79695476	+	956.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008504)	TTS (NM_008504)	1550.0	NM_001302499	16904.0	Mm.378960	NM_008504	ENSMUSG00000054206	Gzmm	Lmet1|MMET-1	granzyme M (lymphocyte met-ase 1)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-58586277-4	chr1	58586184	58586384	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025597)	promoter-TSS (NM_025597)	49.0	NM_001310598	213056.0	Mm.26272	NM_172513	ENSMUSG00000038174	Fam126b	C130065N10Rik|D1Ertd53e|D630010C10	family with sequence similarity 126, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-132008127-4	chr1	132008004	132008204	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007923, intron 1 of 4)	CpG	499.0	NM_007923	13714.0	Mm.254233	NM_007923	ENSMUSG00000026436	Elk4	2310011G17Rik|A130026I01Rik|BB162516|SAP-1|Sap1	ELK4, member of ETS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-58503993-2	chr1	58503893	58504093	+	763.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_008765, intron 1 of 17)	B4A|SINE|B4	1116.0	NM_001271526	18393.0	Mm.3411	NM_008765	ENSMUSG00000026037	Orc2	AU041563|Orc2l	origin recognition complex, subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-55649325-2	chr4	55649225	55649425	+	757.099976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-116850.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-61536565-4	chr10	61536464	61536664	+	770.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153542, intron 3 of 4)	intron (NM_153542, intron 3 of 4)	-58920.0	NM_001177511	237362.0	Mm.131297	NM_001177511	ENSMUSG00000020090	Npffr1	Gm236|Gpr147|NPFF1|NPFF1R|OT7T022	neuropeptide FF receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-65957394-4	chr3	65957295	65957495	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019937, intron 2 of 10)	intron (NM_019937, intron 2 of 10)	854.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	5.54924891235553	4.14297873844725	4.68496121106145	5.2370504350619	5.20533740960281	5.29518095866736	5.4604675581868	5.62118575159821	0.446908811803959	0.193182788827726	0.672347834177643
Merged-chr16-16438660-3	chr16	16438579	16438779	+	712.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301817, intron 11 of 16)	MRLTR33|LTR|ERVK	-79648.0	NM_001360009	74006.0	Mm.218820	NM_152816	ENSMUSG00000022789	Dnm1l	6330417M19Rik|AI450666|Dlp1|Dnmlp1|Drp1|python	dynamin 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-41121203-4	chr9	41121091	41121291	+	805.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176860, intron 1 of 13)	intron (NM_176860, intron 1 of 13)	36871.0	NM_176860	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	-0.33512524086376	-0.320729764313424	-0.32543644540539	-0.329074024915857	0.255868982725589	-0.319670038690639	-0.32439757814229	0.419559900388673	3.77758930107665	0.139160466441377	1
Merged-chr12-104749782-2	chr12	104749636	104749836	+	681.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_148948, intron 1 of 26)	intron (NM_148948, intron 1 of 26)	2216.0	NM_148948	192119.0	Mm.21135	NM_148948	ENSMUSG00000041415	Dicer1	1110006F08Rik|D12Ertd7e|mKIAA0928	dicer 1, ribonuclease type III	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166188229-4	chr2	166188142	166188342	+	895.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32559.0	NM_028072	72043.0	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-22353860-4	chr16	22353761	22353961	+	964.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58873.0	NR_153764	100043507.0		NR_153764		Gng5-ps	Gm15776	G protein subunit gamma 5, pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-15816888-2	chr17	15816788	15816988	+	707.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_178615, intron 2 of 2)	intron (NM_178615, intron 2 of 2)	9698.0	NM_178615	68799.0	Mm.293466	NM_178615	ENSMUSG00000048027	Rgmb	1110059F19Rik|DRAGON	repulsive guidance molecule family member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-36937740-1	chr8	36937640	36937840	+	545.0	f0_balb.idr	exon (NM_001194940, exon 2 of 18)	exon (NM_001194940, exon 2 of 18)	14702.0	NM_001194940	50768.0	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	1.25785565183565	1.15555356884831	0.755447646389992	1.43883579718491	0.898482442912197	1.44749482418175	0.758055449607997	1.44754260778059	0.0115274746431323	0.993460376767145	0.998431161219273
Merged-chr7-49599852-2	chr7	49599752	49599952	+	544.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175272, intron 36 of 37)	intron (NM_175272, intron 36 of 37)	36983.0	NM_001005232	13172.0	Mm.307176	NM_001005232	ENSMUSG00000030507	Dbx1	AI426026|Dbx	developing brain homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-169779073-3	chr2	169778925	169779125	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080455, intron 1 of 1)	(TC)n|Simple_repeat|Simple_repeat	145379.0	NM_080455	228911.0	Mm.315789	NM_080455	ENSMUSG00000047907	Tshz2	2900073F20Rik|B830045G17|Mtsh2|Sdccag33l|Tsh2|Zfp218|mKIAA4248|teashirt2	teashirt zinc finger family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-94437075-4	chr2	94436973	94437173	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007466, intron 1 of 13)	intron (NM_007466, intron 1 of 13)	1113.0	NM_007466	11800.0	Mm.181824	NM_007466	ENSMUSG00000027193	Api5	AAC-11|AI196452|API-5	apoptosis inhibitor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-108083398-4	chr3	108083345	108083545	+	786.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289719, intron 2 of 18)	intron (NM_001289719, intron 2 of 18)	1957.0	NM_001346665	109674.0	Mm.274335	NM_028779	ENSMUSG00000027889	Ampd2	1200014F01Rik|AI552571|Ampd-2|m4521Dajl	adenosine monophosphate deaminase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-184811172-2	chr1	184811072	184811272	+	808.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001290273, exon 1 of 7)	5' UTR (NM_001290273, exon 1 of 7)	128.0	NM_001290273	66112.0	Mm.272457	NM_001081361	ENSMUSG00000026621	Marc1	1300013F15Rik|Mosc1	mitochondrial amidoxime reducing component 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120526157-4	chr11	120526069	120526269	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6A|LTR|ERVK	-4558.0	NM_008101	14527.0	Mm.22329	NM_008101	ENSMUSG00000025127	Gcgr	GR	glucagon receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-66111617-4	chr17	66111524	66111724	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001037757)	promoter-TSS (NM_001037757)	-21.0	NM_001037757	68767.0	Mm.296545	NM_026833	ENSMUSG00000024101	Washc1	1110049F14Rik|ORF19|Wash|Wash1	WASH complex subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-42124385-4	chr9	42124315	42124515	+	896.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011436)	promoter-TSS (NM_011436)	-118.0	NM_011436	20660.0	Mm.121920	NM_011436	ENSMUSG00000049313	Sorl1	2900010L19Rik|AI596264|AW261561|LR11|SorLA|gp250|mSorLA	sortilin-related receptor, LDLR class A repeats-containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16776058-2	chr7	16775958	16776158	+	788.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5288.0	NM_009201	20514.0	Mm.1056	NM_009201	ENSMUSG00000001918	Slc1a5	AAAT|ASCT2|ATBO|M7V1|M7VS1|R16|RDRC|Slc1a7	solute carrier family 1 (neutral amino acid transporter), member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-90597675-4	chr6	90597583	90597783	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356412, intron 21 of 22)	intron (NM_001356412, intron 21 of 22)	-7197.0	NM_027868	71699.0	Mm.272633	NM_027868	ENSMUSG00000030089	Slc41a3	1010001P06Rik|AI480742|SLC41A1-L2	solute carrier family 41, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-6660957-2	chr13	6660857	6661057	+	821.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-12186.0	NM_001291071	56421.0	Mm.273874	NM_019703	ENSMUSG00000021196	Pfkp	1200015H23Rik|9330125N24Rik|ATP-PFK|PFK-C|PFK-P	phosphofructokinase, platelet	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-87947139-1	chr3	87947039	87947239	+	588.0	f1_balb.idr	Intergenic	Intergenic	-1554.0	NM_007759	12904.0	Mm.4757	NM_007759	ENSMUSG00000004885	Crabp2	AI893628|Crabp-2|CrabpII	cellular retinoic acid binding protein II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-42101962-2	chr13	42101862	42102062	+	892.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007772, intron 2 of 8)	intron (NM_007772, intron 2 of 8)	49941.0	NM_007772	110521.0	Mm.4808	NM_007772	ENSMUSG00000021366	Hivep1	Cryabp1	human immunodeficiency virus type I enhancer binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-29322757-2	chr4	29322657	29322857	+	957.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	254678.0	NR_151693	102634169.0		NR_151693		Gm11917	-	predicted gene 11917	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-181222166-2	chr2	181222066	181222266	+	558.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_199312, exon 2 of 3)	exon (NM_199312, exon 2 of 3)	2150.0	NM_199312	332713.0	Mm.23349	NM_199312	ENSMUSG00000047841	Fndc11	1700026M20Rik	fibronectin type III domain containing 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-186549405-3	chr1	186549303	186549503	+	909.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131124, intron 1 of 2)	L1MB3|LINE|L1	9278.0	NR_131124	320449.0	Mm.404477	NR_131124	ENSMUSG00000103690	A730004F24Rik	-	RIKEN cDNA A730004F24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-24493606-4	chr12	24493520	24493720	+	977.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-4961.0	NM_020614	21340.0	Mm.39082	NM_020614	ENSMUSG00000059669	Taf1b	4930408G01Rik|A230108M10Rik|TAFI68|Tafi86|p63	TATA-box binding protein associated factor, RNA polymerase I, B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-80132668-2	chr15	80132568	80132768	+	602.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025609)	promoter-TSS (NM_025609)	-486.0	NM_025609	66513.0	Mm.288245	NM_025609	ENSMUSG00000022414	Tab1	2310012M03Rik|Map3k7ip1|b2b449Clo	TGF-beta activated kinase 1/MAP3K7 binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-64001629-4	chr15	64001518	64001718	+	902.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144846, intron 1 of 11)	intron (NM_144846, intron 1 of 11)	-3552.0	NM_001360035	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-105963270-3	chr12	105963206	105963406	+	736.0	f0_balb.idr|f0_c57.idr|f1_balb.idr	Intergenic	Intergenic	-46957.0	NM_011705	22367.0	Mm.2981	NM_011705	ENSMUSG00000021115	Vrk1	51PK	vaccinia related kinase 1	protein-coding	2.27268846244973	2.09326779753407	1.87320213612495	1.22682013151459	1.99828902052873	2.9070338057011	1.8877272580059	1.97437456369907	0.836597229256517	0.391902749362059	0.880996748971749
Merged-chr7-90035252-3	chr7	90035152	90035352	+	855.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110365, intron 1 of 5)	intron (NR_110365, intron 1 of 5)	6093.0	NR_110364	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115262084-4	chr5	115262003	115262203	+	929.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302449, intron 1 of 16)	intron (NM_001302449, intron 1 of 16)	10792.0	NM_001302448	50849.0	Mm.30051	NM_016698	ENSMUSG00000041740	Rnf10	AA675014|RIE2|mKIAA0262	ring finger protein 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-57976542-4	chr15	57976444	57976644	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9359.0	NM_173862	239463.0	Mm.221241	NM_173862	ENSMUSG00000051225	Fam83a	-	family with sequence similarity 83, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96256097-4	chr3	96255999	96256199	+	959.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7218.0	NM_033596	97122.0	Mm.227295	NM_033596	ENSMUSG00000091405	Hist2h4	H4|X04652	histone cluster 2, H4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-10320535-1	chr10	10320435	10320635	+	659.0	f0_balb.idr	Intergenic	Intergenic	151779.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-49554948-4	chr2	49554784	49554984	+	969.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64430.0	NM_008449	16574.0	Mm.256342	NM_008449	ENSMUSG00000026764	Kif5c	KINN|Khc|NKHC|NKHC2	kinesin family member 5C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-90509508-4	chr18	90509412	90509612	+	961.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198295)	promoter-TSS (NM_198295)	-642.0	NM_198295	67988.0	Mm.268041	NM_198295	ENSMUSG00000024614	Tmx3	6430411B10Rik|A730024F05Rik|AV259382|Txndc10|mKIAA1830	thioredoxin-related transmembrane protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-134919845-4	chr4	134919747	134919947	+	890.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3778.0	NM_023665	27981.0	Mm.331964	NM_023665	ENSMUSG00000037266	Rsrp1	2700043I21Rik|D4Ucla2|D4Wsu53e	arginine/serine rich protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152824442-2	chr1	152824342	152824542	+	675.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010877, intron 6 of 15)	intron (NM_010877, intron 6 of 15)	24289.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-48978006-4	chr13	48977906	48978106	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9894.0	NR_015601	68128.0	Mm.426304	NR_015601		Fam120aos	C030044B11Rik	family with sequence similarity 120A, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-72212273-4	chr1	72212175	72212375	+	968.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357488)	promoter-TSS (NM_001357488)	32.0	NM_001005423	381269.0	Mm.422636	NM_001005423	ENSMUSG00000039395	Mreg	Gm974|Wdt2|dsu	melanoregulin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-102690245-4	chr13	102690139	102690339	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-3308.0	NM_001360519	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4143629-2	chr19	4143529	4143729	+	817.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_206973, exon 2 of 2)	exon (NM_206973, exon 2 of 2)	3830.0	NM_206973	269053.0	Mm.131677	NM_206973	ENSMUSG00000044724	Gpr152	A930009H15Rik|Gm673	G protein-coupled receptor 152	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-79564390-2	chr14	79564290	79564490	+	986.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286412, intron 3 of 7)	PB1D7|SINE|Alu	-23270.0	NM_026474	67955.0	Mm.18972	NM_026474	ENSMUSG00000022024	Sugt1	2410174K12Rik|SGT1	SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-66474034-4	chr18	66473921	66474121	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15417.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-47035625-4	chr7	47035508	47035708	+	884.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-15032.0	NM_026436	67893.0	Mm.27338	NM_026436	ENSMUSG00000010307	Tmem86a	1810054O13Rik|AI414959|AW742698	transmembrane protein 86A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30664974-4	chr7	30664810	30665010	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027999)	promoter-TSS (NM_027999)	84.0	NM_027999	71909.0	Mm.290410	NM_027999	ENSMUSG00000078762	Haus5	2310022K01Rik	HAUS augmin-like complex, subunit 5	protein-coding	0.224780020212144	0.564416271796466	1.44324598852279	0.247593801319501	0.228254919539265	0.280861066920702	2.01638735627566	0.249923191597071	0.827355804161981	0.801133950507617	0.998431161219273
Merged-chr14-102908317-2	chr14	102908217	102908417	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	74315.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-108755846-2	chr12	108755746	108755946	+	844.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37465.0	NM_009537	22632.0	Mm.3868	NM_009537	ENSMUSG00000021264	Yy1	AW488674|NF-E1	YY1 transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-10923391-4	chr4	10923285	10923485	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48887.0	NM_026005	67157.0	Mm.440552	NM_026005	ENSMUSG00000059482	2610301B20Rik	AI428449	RIKEN cDNA 2610301B20 gene	protein-coding	6.38354250707797	6.540795632049	5.84229210028235	6.27924862137233	6.55023399836533	6.83087970838023	6.50383912515391	6.39544473849037	0.314863947956475	0.143222330370685	0.591050740582714
Merged-chr3-107102058-4	chr3	107102062	107102262	+	943.435425	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008417, intron 1 of 2)	CpG	595.0	NM_008417	16490.0	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-35899149-2	chr16	35899049	35899249	+	743.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27767.0	NM_001039530	547253.0	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-23040106-2	chr8	23039998	23040198	+	592.25	f0_c57.idr|f1_c57bl6.idr	intron (NM_001277284, intron 1 of 42)	intron (NM_001277284, intron 1 of 42)	4999.0	NM_001277284	11733.0	Mm.334444	NM_031158	ENSMUSG00000031543	Ank1	Ank-1|nb|pale	ankyrin 1, erythroid	protein-coding	1.73198653855308	0.964852915866053	0.665471936976177	2.45934358064618	1.66079837389222	0.691064901760654	0.670170110348782	0.651666298574849	-1.98490094287295	0.186044706359898	0.662756646943605
Merged-chr6-57823666-4	chr6	57823571	57823771	+	865.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146168, intron 1 of 4)	intron (NM_146168, intron 1 of 4)	1454.0	NM_146168	232023.0	Mm.24642	NM_146168	ENSMUSG00000037788	Vopp1	AW146242|Ecop	vesicular, overexpressed in cancer, prosurvival protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-29529206-4	chr6	29529090	29529290	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252382)	promoter-TSS (NM_001252382)	-92.0	NM_001252382	27056.0	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-61193591-3	chr11	61193493	61193693	+	820.944458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15149.0	NM_007436	11670.0	Mm.4257	NM_007436	ENSMUSG00000019102	Aldh3a1	Ahd-4|Ahd4|Aldh|Aldh3	aldehyde dehydrogenase family 3, subfamily A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-52165024-4	chr18	52164923	52165123	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41477.0	NR_029788	723830.0		NR_029788	ENSMUSG00000065494	Mir28a	Mir28|Mirn28|mmu-mir-28|mmu-mir-28a	microRNA 28a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128083175-4	chr10	128083075	128083275	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016774)	promoter-TSS (NM_016774)	-132.0	NM_016774	11947.0	Mm.238973	NM_016774	ENSMUSG00000025393	Atp5b	Atp5f1b	ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64281749-2	chr5	64281649	64281849	+	741.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 9 of 18)	intron (NM_001289514, intron 9 of 18)	51392.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-145120217-1	chr6	145120117	145120317	+	639.0	f1_balb.idr	intron (NM_001281980, intron 1 of 18)	RLTR20B4_MM|LTR|ERVK	-1522.0	NM_008511	16970.0	Mm.843	NM_008511	ENSMUSG00000030263	Lrmp	D6Int3|D6Int4|D6Int5|D6Int7|D6Int8|Jaw1	lymphoid-restricted membrane protein	protein-coding	2.245918153859	2.00529140081935	1.94059227647251	2.00376224052626	1.55494718526645	1.51511296846742	1.95506480421032	2.01372231877681	-0.798805102648457	0.407050928793791	0.891789957196972
Merged-chr1-135766408-3	chr1	135766295	135766495	+	807.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_013750, exon 1 of 2)	5' UTR (NM_013750, exon 1 of 2)	310.0	NM_013750	27280.0	Mm.34346	NM_013750	ENSMUSG00000041801	Phlda3	Tih1	pleckstrin homology like domain, family A, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97403110-2	chr6	97403010	97403210	+	732.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 5 of 23)	intron (NM_145148, intron 5 of 23)	56176.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-12964613-2	chr7	12964513	12964713	+	850.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1225.0	NM_001362140	243834.0	Mm.133086	NM_178732	ENSMUSG00000004500	Zfp324	A930002M05|D430030K24Rik|ZF5128	zinc finger protein 324	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-98031156-4	chr5	98031060	98031260	+	994.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133738)	promoter-TSS (NM_133738)	-198.0	NM_133738	71914.0	Mm.24842	NM_133738	ENSMUSG00000029338	Antxr2	2310046B19Rik|AW561899|CMG-2|CMG2|cI-35	anthrax toxin receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-47653501-2	chr9	47653424	47653624	+	611.0	f0_balb.idr|f1_balb.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	123172.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	0.77929634784816	0.852630800970225	2.07527255531432	0.811251420805962	2.06054083711924	1.54549295354339	0.834792146108258	2.32937213511937	1.50246742115383	0.289466027434647	0.794962737980023
Merged-chr4-44014404-2	chr4	44014304	44014504	+	728.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080384, intron 2 of 5)	intron (NM_001080384, intron 2 of 5)	1754.0	NM_001290470	12757.0	Mm.298875	NM_016760	ENSMUSG00000028478	Clta	AV026556|Lca	clathrin, light polypeptide (Lca)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-108692497-4	chr5	108692413	108692613	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1716.0	NM_001164259	116701.0	Mm.35691	NM_054071	ENSMUSG00000008090	Fgfrl1	FGFR5|FGFR5beta|FGFR5gamma	fibroblast growth factor receptor-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-40804791-1	chr9	40804691	40804891	+	541.0	f1_c57bl6.idr	intron (NM_031165, intron 8 of 8)	U14|snRNA|snRNA	3518.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-62245630-5	chr14	62245602	62245802	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47277.0	NM_173419	239133.0	Mm.127330	NM_173419	ENSMUSG00000048281	Dleu7	BC038059	deleted in lymphocytic leukemia, 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-92855416-4	chr8	92855331	92855531	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173014)	promoter-TSS (NM_173014)	98.0	NM_001357374	270084.0	Mm.21463	NM_173014	ENSMUSG00000033192	Lpcat2	1-AGPAT 11|A330042H22|Aytl1|Aytl1a|lpafat1|lysoPAFAT|lysoPAFAT/LPCAT2	lysophosphatidylcholine acyltransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127575705-2	chr10	127575587	127575787	+	572.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 24 of 88)	intron (NM_008512, intron 24 of 88)	-41128.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	-1.03224044282356	-0.528348676481903	-1.02497085245391	-1.02881515129378	-0.758703265733638	-1.01077896320256	-1.02233033167315	-1.02845414759798	-0.909622492857339	0.776854299466003	1
Merged-chr2-3427785-3	chr2	3427728	3427928	+	822.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302674, intron 2 of 13)	intron (NM_001302674, intron 2 of 13)	3697.0	NM_001302684	227525.0	Mm.23483	NM_146114	ENSMUSG00000026648	Dclre1c	9930121L06Rik|AI661365|Art|Snm1l	DNA cross-link repair 1C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126522996-2	chr8	126522896	126523096	+	721.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47931.0	NM_001159907	212728.0	Mm.482479	NM_001159907	ENSMUSG00000090290	Tarbp1	Gm17296|Gm179	TAR RNA binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19337082-2	chr7	19336982	19337182	+	595.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7989.0	NM_001127324	13870.0	Mm.280913	NM_007948	ENSMUSG00000003549	Ercc1	Ercc-1	excision repair cross-complementing rodent repair deficiency, complementation group 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-117359653-2	chr5	117359547	117359747	+	640.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021539, intron 1 of 8)	intron (NM_021539, intron 1 of 8)	2342.0	NM_021539	59043.0	Mm.28489	NM_021539	ENSMUSG00000029364	Wsb2	AA673511|Swip2|WSB-2	WD repeat and SOCS box-containing 2	protein-coding	0.0434840147137918	0.0654678291268634	0.0583294202846878	0.389985006005347	0.576982201499017	0.0670688161210324	0.0599089866603154	1.08378303381598	2.59151814016888	0.230784953076045	1
Merged-chr16-43654586-1	chr16	43654486	43654686	+	593.0	f0_balb.idr	intron (NM_001146325, intron 3 of 3)	intron (NM_001146325, intron 3 of 3)	9598.0	NM_001146325	100043314.0	Mm.390896	NM_001146325	ENSMUSG00000071552	Tigit	Vstm3	T cell immunoreceptor with Ig and ITIM domains	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81259258-2	chr10	81259158	81259358	+	644.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001285854, exon 3 of 13)	exon (NM_001285854, exon 3 of 13)	1959.0	NM_001285853	17179.0	Mm.2918	NM_010768	ENSMUSG00000004933	Matk	CHK|HYL|Ntk|p56ntk	megakaryocyte-associated tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-85007915-4	chr8	85007834	85008034	+	859.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_052011, exon 10 of 10)	non-coding (NR_052011, exon 10 of 10)	6474.0	NM_001130194	212989.0	Mm.215154	NM_001130194	ENSMUSG00000052819	Best2	Vmd2l1	bestrophin 2	protein-coding	-1.58994551673671	-1.55912852307891	-1.56844783632235	-1.57610299769523	-1.18549093183599	-1.55710898902261	-1.56633814807757	-1.57473272746952	1.78703309985663	0.610309988231842	1
Merged-chr11-86107474-2	chr11	86107374	86107574	+	884.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178309, intron 16 of 19)	MLT2B5|LTR|ERVL	-83124.0	NR_046030	629393.0	Mm.372867	NR_046030		Gm20759	-	predicted gene, 20759	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-142542116-2	chr1	142542016	142542216	+	771.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR26|LTR|ERVK	-1098581.0	NM_020025	26878.0	Mm.285580	NM_020025	ENSMUSG00000033849	B3galt2	-	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-23197739-2	chr10	23197639	23197839	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010167, intron 3 of 18)	intron (NM_010167, intron 3 of 18)	152151.0	NM_001347372	14051.0	Mm.332128	NM_010167	ENSMUSG00000010461	Eya4	B130023L16Rik	EYA transcriptional coactivator and phosphatase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-100052307-2	chr12	100052207	100052407	+	820.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164426, intron 2 of 2)	intron (NM_001164426, intron 2 of 2)	-60024.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-21653259-3	chr18	21653155	21653355	+	664.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081403)	promoter-TSS (NM_001081403)	-887.0	NM_001081403	225266.0	Mm.436836	NM_001081403	ENSMUSG00000042514	Klhl14	6330403N15Rik|AI785250|printor	kelch-like 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-62843355-2	chr14	62843255	62843455	+	838.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175546, intron 1 of 11)	intron (NM_175546, intron 1 of 11)	5634.0	NR_106174	102465889.0		NR_106174	ENSMUSG00000099245	Mir8098	Gm27462|mmu-mir-8098	microRNA 8098	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-116063065-1	chr2	116062965	116063165	+	588.0	f0_balb.idr	intron (NM_001136072, intron 2 of 12)	intron (NM_001136072, intron 2 of 12)	1554.0	NM_001346044	17536.0	Mm.247566	NM_010825	ENSMUSG00000027210	Meis2	A430109D20Rik|Mrg1|Stra10	Meis homeobox 2	protein-coding	-0.537420008187142	-0.526012484097918	-0.529754989517255	0.0948060579263241	-0.0570759593016932	-0.525168184633122	-0.528929981754154	-0.532135393451812	-0.511960813024051	0.855730970216827	1
Merged-chr5-12206171-4	chr5	12206069	12206269	+	920.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-176997.0	NM_028882	108151.0	Mm.89313	NM_028882	ENSMUSG00000040254	Sema3d	4631426B19Rik	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-124340900-2	chr1	124340800	124341000	+	713.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-295341.0	NM_199021	269109.0	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-77216834-5	chr11	77216701	77216901	+	900.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177710, intron 1 of 14)	intron (NM_177710, intron 1 of 14)	376.0	NM_177710	237860.0	Mm.440381	NM_177710	ENSMUSG00000037926	Ssh2	SSH-2|SSH-2L|mSSH-2L	slingshot protein phosphatase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-96074492-2	chr11	96074392	96074592	+	684.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007506, intron 2 of 4)	intron (NM_007506, intron 2 of 4)	1139.0	NM_001161419	11951.0	Mm.258	NM_007506	ENSMUSG00000006057	Atp5g1	-	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C1 (subunit 9)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-86976573-2	chr10	86976473	86976673	+	600.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_138673, intron 5 of 68)	intron (NM_138673, intron 5 of 68)	31369.0	NM_138673	192188.0	Mm.279611	NM_138673	ENSMUSG00000035459	Stab2	FEEL-2|FELL|MFEEL-2|STAB-2	stabilin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-35886479-2	chr13	35886379	35886579	+	812.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19868.0	NM_145938	208366.0	Mm.35545	NM_145938	ENSMUSG00000021418	Rpp40	D8Bwg1265e|Rnasep1	ribonuclease P 40 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126703155-2	chr7	126703055	126703255	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_009898, exon 2 of 11)	exon (NM_009898, exon 2 of 11)	1065.0	NM_001301374	12721.0	Mm.290482	NM_009898	ENSMUSG00000030707	Coro1a	Clabp|Lmb3|TACO|p57	coronin, actin binding protein 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59802556-4	chr15	59802457	59802657	+	999.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7598.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	1.85211622114861	1.32592129148149	1.5268338215267	0.697396357431719	1.66101529480728	0.727949719494542	0.712759577234417	0.699506141136605	-1.3696073014186	0.378013060302198	0.871187225798265
Merged-chr4-133005876-2	chr4	133005776	133005976	+	639.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5630.0	NM_146155	230793.0	Mm.31816	NM_146155	ENSMUSG00000037692	Ahdc1	D030015G18Rik	AT hook, DNA binding motif, containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-16180234-2	chr3	16180134	16180334	+	656.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR17C_Mm|LTR|ERVK	-2931.0	NM_001358043	229096.0	Mm.23834	NM_172677	ENSMUSG00000047213	Ythdf3	9130022A11Rik	YTH domain family 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-57234012-4	chr9	57233953	57234153	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2503.0	NM_001014398	541610.0	Mm.378036	NM_001014398	ENSMUSG00000070298	Trcg1	-	taste receptor cell gene 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21708351-2	chr9	21708251	21708451	+	854.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR44A|LTR|ERVK	-15225.0	NM_001252658	16835.0	Mm.3213	NM_010700	ENSMUSG00000032193	Ldlr	Hlb301	low density lipoprotein receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-13001289-1	chr14	13001189	13001389	+	572.0	f0_balb.idr	Intergenic	Intergenic	-178210.0	NM_001359919	27062.0	Mm.260881	NM_012061	ENSMUSG00000054423	Cadps	AU067781|CAPS|CAPS1|mKIAA1121	Ca2+-dependent secretion activator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46868419-4	chr8	46868319	46868519	+	978.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE-int|LTR|ERVL-MaLR	-118468.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132526865-2	chr4	132526765	132526965	+	619.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	8549.0	NM_007512	11983.0	Mm.2171	NM_007512	ENSMUSG00000054428	Atpif1	Atpi|IF(1)|If1	ATPase inhibitory factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-35585112-2	chr5	35585012	35585212	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030721, intron 2 of 18)	intron (NM_030721, intron 2 of 18)	2078.0	NM_030721	80911.0	Mm.291503	NM_030721	ENSMUSG00000029098	Acox3	BI685180|EST-s59|PCOX	acyl-Coenzyme A oxidase 3, pristanoyl	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5571976-2	chr17	5571876	5572076	+	776.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	79376.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-63897966-4	chr11	63897890	63898090	+	837.946411	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018805, intron 1 of 1)	intron (NM_018805, intron 1 of 1)	24294.0	NM_018805	54710.0	Mm.274426	NM_018805	ENSMUSG00000070407	Hs3st3b1	3-OST-3B|3OST3B1|3Ost3b|AU041882|AW536289|Hs3st3b|m3-OST-3B	heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	protein-coding	1.24604677204491	0.981565100562493	1.48094840216889	1.85188856870642	1.6831241363634	1.20609080986677	1.49241380283095	1.56863078276018	0.22088518791322	0.854150663934058	0.998431161219273
Merged-chr7-122256850-4	chr7	122256763	122256963	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32262.0	NM_001316672	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117094305-4	chr11	117094207	117094407	+	775.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16959.0	NR_105853	102465258.0		NR_105853	ENSMUSG00000104740	Mir6516	mmu-mir-6516	microRNA 6516	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-53087600-3	chr5	53087488	53087688	+	896.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38235.0	NM_011402	20531.0	Mm.284891	NM_011402	ENSMUSG00000029188	Slc34a2	AA536683|D5Ertd227e|NaPi-2b|Npt2b	solute carrier family 34 (sodium phosphate), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-50030109-4	chr6	50030022	50030222	+	993.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-80119.0	NM_019939	56524.0	Mm.41288	NM_008016	ENSMUSG00000038388	Mpp6	P55t|Pals2	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5730780-4	chr17	5730641	5730841	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 7 of 8)	intron (NM_146073, intron 7 of 8)	-67916.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-47461189-2	chr18	47461089	47461289	+	611.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_033453, intron 3 of 3)	intron (NR_033453, intron 3 of 3)	8521.0	NR_033453	77668.0	Mm.98433	NR_033453		9130209A04Rik	-	RIKEN cDNA 9130209A04 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-96923651-4	chr5	96923462	96923662	+	919.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131152, intron 2 of 2)	intron (NR_131152, intron 2 of 2)	2290.0	NR_131152	666266.0	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-94700209-3	chr6	94700077	94700277	+	966.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008377)	promoter-TSS (NM_008377)	-32.0	NM_008377	16206.0	Mm.245210	NM_008377	ENSMUSG00000030029	Lrig1	D6Bwg0781e|Img|LIG-1	leucine-rich repeats and immunoglobulin-like domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-94386496-4	chr11	94386397	94386597	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029600, intron 1 of 30)	intron (NM_029600, intron 1 of 30)	6479.0	NM_029600	76408.0	Mm.23942	NM_029600	ENSMUSG00000020865	Abcc3	1700019L09Rik|ABC31|MLP2|MOAT-D|MRP3	ATP-binding cassette, sub-family C (CFTR/MRP), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-16210121-4	chr3	16210031	16210231	+	919.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172677, intron 5 of 5)	intron (NM_172677, intron 5 of 5)	26966.0	NM_172677	229096.0	Mm.23834	NM_172677	ENSMUSG00000047213	Ythdf3	9130022A11Rik	YTH domain family 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-86293518-4	chr17	86293392	86293592	+	950.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011104, intron 1 of 14)	intron (NM_011104, intron 1 of 14)	-6314.0	NR_045435	72104.0	Mm.443401	NR_045435	ENSMUSG00000100738	2010106C02Rik	-	RIKEN cDNA 2010106C02 gene	ncRNA	1.89472359520291	1.51394590904308	2.14846705211298	2.26019391210583	2.00474730527792	1.70470850407837	1.80927400442333	1.76012536026254	-0.492985862874651	0.612777753155503	0.976548412604232
Merged-chr7-97748343-4	chr7	97748264	97748464	+	890.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10117.0	NM_175105	66333.0	Mm.29756	NM_175105	ENSMUSG00000042797	Aqp11	1700015P13Rik|AI648923|sjds	aquaporin 11	protein-coding	-0.670950874894612	-0.320597300650557	-0.803047711104758	-0.805269517958193	-0.545562041706143	-0.797724068301104	-0.802411283126922	-0.804881878203083	-1.20302993619305	0.672100983140737	1
Merged-chr2-11552480-3	chr2	11552375	11552575	+	893.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177758, intron 1 of 14)	intron (NM_001177758, intron 1 of 14)	1454.0	NM_001177758	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-57034798-3	chr6	57034697	57034897	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-1116.0	NM_134187	171205.0	Mm.222638	NM_134187	ENSMUSG00000061208	Vmn1r8	V1rc32	vomeronasal 1 receptor 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-12921822-4	chr7	12921743	12921943	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009095)	promoter-TSS (NM_009095)	-468.0	NM_009095	20103.0	Mm.5291	NM_009095	ENSMUSG00000012848	Rps5	AA617411	ribosomal protein S5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-61374308-4	chr10	61374235	61374435	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013753, intron 1 of 19)	intron (NM_013753, intron 1 of 19)	9188.0	NM_013753	27355.0	Mm.269699	NM_013753	ENSMUSG00000020092	Pald1	MMPAL|Pald|mKIAA1274	phosphatase domain containing, paladin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-8225376-4	chr17	8225266	8225466	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10677.0	NM_001190333	12458.0	Mm.8007	NM_009835	ENSMUSG00000040899	Ccr6	CC-CKR-6|CCR-6|Cmkbr6|KY411	chemokine (C-C motif) receptor 6	protein-coding	2.79426993180009	3.47100044879244	3.44211096697093	3.50199100598389	4.12068981302024	2.36812345469653	3.55135719074415	3.89664401255872	0.48545543379725	0.421342592453393	0.900322118218157
Merged-chr5-90366179-2	chr5	90366079	90366279	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030886)	promoter-TSS (NM_030886)	6.0	NM_030886	81702.0	Mm.245522	NM_030886	ENSMUSG00000055204	Ankrd17	4933425K22Rik|A130069E23Rik|A930008M01|AA407558|AA516750|AU040470|Foe|Gtar|Mask|mKIAA0697	ankyrin repeat domain 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123904336-1	chr5	123904236	123904436	+	665.0	f1_c57bl6.idr	Intergenic	Intergenic	-2939.0	NM_026603	68184.0	Mm.28549	NM_026603	ENSMUSG00000023106	Denr	1500003K04Rik	density-regulated protein	protein-coding	0.136137909883732	-0.013982864492302	-0.190510559747121	-0.19333932701681	0.0442364176085212	0.138386915861101	-0.0287257833713567	-0.192846399110933	0.500975335964098	0.815767853395935	1
Merged-chr8-110384927-1	chr8	110384827	110385027	+	700.0	f0_c57.idr	intron (NM_172916, intron 11 of 86)	B1_Mus1|SINE|Alu	117429.0	NR_105058	100861869.0	Mm.84499	NR_105058		Gm21283	-	predicted gene, 21283	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-90043654-4	chr7	90043575	90043775	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110364, intron 5 of 5)	intron (NR_110364, intron 5 of 5)	14516.0	NR_110364	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	5.46365680523682	4.82316960408417	6.03840753034293	5.11517374886488	5.62474825708229	5.50573956284631	5.13987771775821	5.66085564529717	0.0689647590679582	0.826720555981361	0.998431161219273
Merged-chr8-126884736-4	chr8	126884650	126884850	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35730.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-109880653-2	chr8	109880553	109880753	+	629.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001122594, intron 2 of 18)	ORR1B2-int|LTR|ERVL-MaLR	12050.0	NM_001122594	244650.0	Mm.23494	NM_001122594	ENSMUSG00000031732	Phlpp2	AI481772|C130044A18Rik|Phlppl	PH domain and leucine rich repeat protein phosphatase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-19087413-1	chr6	19087313	19087513	+	544.0	f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	191430.0	NR_126084	74725.0	Mm.387798	NR_126084	ENSMUSG00000107217	4930524B17Rik	-	RIKEN cDNA 4930524B17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134064304-3	chr6	134064200	134064400	+	753.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007961, intron 1 of 7)	intron (NM_007961, intron 1 of 7)	28600.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	1.6462818166448	2.47814786762918	2.22380560302282	0.865018682025888	1.06139647794759	0.913878479236609	0.889800575783922	1.87787527104355	-1.96137316446303	0.132435203121231	0.56954804343643
Merged-chr2-14074564-2	chr2	14074464	14074664	+	871.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_038162)	promoter-TSS (NR_038162)	464.0	NM_011484	20844.0	Mm.273174	NM_011484	ENSMUSG00000026718	Stam	STAM1	signal transducing adaptor molecule (SH3 domain and ITAM motif) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-70585385-4	chr9	70585289	70585489	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152142, intron 15 of 19)	intron (NR_152142, intron 15 of 19)	42674.0	NM_025690	66660.0	Mm.22379	NM_025690	ENSMUSG00000032212	Sltm	5730455C01Rik|5730555F13Rik|9130215G10Rik|Met	SAFB-like, transcription modulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106082494-6	chr11	106082320	106082520	+	846.361084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2482.0	NM_011947	26406.0	Mm.27041	NM_011947	ENSMUSG00000020700	Map3k3	AW548911|MAPKKK3|Mekk3|mKIAA4031	mitogen-activated protein kinase kinase kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-148982528-4	chr3	148982486	148982686	+	965.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27951.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	1.67048489789397	3.08017691782092	0.984527950796058	1.77705336983452	2.51598692693818	1.32022618735806	0.991596352604179	1.4482517704165	-0.930372638120909	0.429917751350014	0.904095509792853
Merged-chr6-24257371-2	chr6	24257271	24257471	+	618.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-89279.0	NM_019481	55961.0	Mm.19299	NM_019481	ENSMUSG00000029700	Slc13a1	AI314066|AI987826|NaSi-1|Nas1	solute carrier family 13 (sodium/sulfate symporters), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-27491899-2	chr7	27491799	27491999	+	703.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4946.0	NM_018820	55942.0	Mm.153684	NM_018820	ENSMUSG00000008384	Sertad1	1110032C13Rik|AV000455|AW456625|Sei-1|Sei1|TRIP-Br1	SERTA domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-102714023-2	chr9	102713928	102714128	+	619.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3776.0	NM_019764	56332.0	Mm.21145	NM_019764	ENSMUSG00000032531	Amotl2	AW549739|C79691|Lccp|MASCOT|mKIAA0989	angiomotin-like 2	protein-coding	-1.5061220274826	-1.47360709383584	-1.48343987814663	-1.49151681994238	-1.50383953926072	-1.47147628845725	-1.0170701920923	-1.49007105122263	2.15652851593596	0.535359572134045	1
Merged-chr17-31108571-4	chr17	31108462	31108662	+	890.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009593, intron 9 of 14)	intron (NM_009593, intron 9 of 14)	21049.0	NM_011575	21786.0	Mm.4641	NM_011575	ENSMUSG00000024029	Tff3	ITF|mITF	trefoil factor 3, intestinal	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-50736079-2	chr17	50735979	50736179	+	856.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001285991, exon 23 of 23)	exon (NM_001285991, exon 23 of 23)	37398.0	NM_001297747	12228.0	Mm.392910	NM_009770	ENSMUSG00000022863	Btg3	ANA|tob5	B cell translocation gene 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-193699076-2	chr1	193698976	193699176	+	741.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-191546.0	NR_029592	387201.0		NR_029592	ENSMUSG00000065533	Mir205	Mirn205|mir-205|mmu-mir-205	microRNA 205	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88335197-3	chr3	88335107	88335307	+	908.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024246)	promoter-TSS (NM_024246)	-774.0	NM_024246	71913.0	Mm.34256	NM_024246	ENSMUSG00000001420	Tmem79	2310042N02Rik|2310074C17Rik|Matt|ma	transmembrane protein 79	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-4249307-1	chr8	4249207	4249407	+	754.5	f1_balb.idr	exon (NM_001195258, exon 2 of 7)	exon (NM_001195258, exon 2 of 7)	1093.0	NM_001195258	100044509.0	Mm.439193	NM_001195258	ENSMUSG00000089736	Tgfbr3l	Gm14378	transforming growth factor, beta receptor III-like	protein-coding	-0.702784938084436	-0.691739208754689	-0.695355269558521	-0.698147005963179	-0.420076933939085	-0.690924479307445	-0.694557486181746	0.0486475199480811	3.3664245681717	0.232757276703936	1
Merged-chr11-67020415-2	chr11	67020315	67020515	+	894.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4739.0	NM_001291042	338369.0	Mm.128138	NM_177392	ENSMUSG00000050270	Tmem220	-	transmembrane protein 220	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-74429938-2	chr17	74429838	74430038	+	612.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033367, intron 8 of 8)	intron (NM_001033367, intron 8 of 8)	29170.0	NM_001033367	268973.0	Mm.311884	NM_001033367	ENSMUSG00000039193	Nlrc4	9530011P19Rik|CLAN|CLAN1|CLANA|CLANB|CLANC|CLAND|Card12|IPAF	NLR family, CARD domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-72798025-4	chr17	72797920	72798120	+	880.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38608.0	NM_027166	383295.0	Mm.277533	NM_027166	ENSMUSG00000039770	Ypel5	2310076K21Rik|CGI-127	yippee like 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132308639-4	chr4	132308528	132308728	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029468)	promoter-TSS (NR_029468)	-50.0	NR_029468	100039864.0	Mm.258912	NR_029468	ENSMUSG00000086290	Snhg12	2310005L22Rik	small nucleolar RNA host gene 12	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-123667664-3	chr4	123667579	123667779	+	958.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_136925, exon 2 of 4)	non-coding (NR_136925, exon 2 of 4)	1798.0	NR_136925	102633214.0	Mm.399387	NR_136925		Gm12925	-	predicted gene 12925	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-86894666-4	chr3	86894568	86894768	+	976.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195500, intron 2 of 11)	intron (NM_001195500, intron 2 of 11)	26216.0	NM_001195499	70762.0	Mm.44490	NM_027539	ENSMUSG00000028078	Dclk2	6330415M09Rik|AU044875|CL2|CLICK2|Click-II|Dcamkl2	doublecortin-like kinase 2	protein-coding	3.23645861285246	4.46142262009226	3.11058002354974	3.5008658352543	4.32550389255549	3.47702983902776	2.71285830055997	4.1410913835691	0.177064867672919	0.764209740725461	0.998431161219273
Merged-chr10-37451839-2	chr10	37451739	37451939	+	626.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-312913.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-165264095-2	chr1	165263995	165264195	+	716.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-27135.0	NM_001357410	226591.0	Mm.21520	NM_145513	ENSMUSG00000040843	Tiprl	1810011K17Rik	TIP41, TOR signalling pathway regulator-like (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-84141927-3	chr11	84141835	84142035	+	903.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12367.0	NM_172562	217031.0	Mm.45159	NM_172562	ENSMUSG00000018651	Tada2a	AV319371|D030022J10Rik|Tada2l	transcriptional adaptor 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-32215318-4	chr12	32215224	32215424	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6675.0	NM_001146200	30955.0	Mm.101369	NM_020272	ENSMUSG00000020573	Pik3cg	5830428L06Rik|PI3Kgamma|p110gamma	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding	2.19539211974236	2.20462129273299	1.82284206847596	1.77819831845172	2.39545014318963	2.4738798863814	2.14947380560805	2.67662400114251	1.04428694450752	0.220744063840889	0.711835678575402
Merged-chr2-129600003-3	chr2	129599881	129600081	+	774.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355160, intron 1 of 7)	intron (NM_001355160, intron 1 of 7)	4519.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	1.55199343805367	0.921131847716834	1.58048273425329	1.83623217078144	1.56603749575186	0.924710090942509	0.908627131847898	1.84693431231049	-0.432155856624189	0.749123284152249	0.998431161219273
Merged-chr11-114973041-2	chr11	114972935	114973135	+	737.625	f0_balb.idr|f1_balb.idr	Intergenic	RLTR44C|LTR|ERVK	-12618.0	NM_199225	387565.0	Mm.351450	NM_199225	ENSMUSG00000058728	Cd300c	Clm6	CD300C molecule	protein-coding	2.74416689096212	2.18430783050243	1.8736008290578	3.08714424876303	3.10942077182625	3.40043677930091	3.86872577345031	3.34043872712862	1.53812692708669	0.0236027842594596	0.201005355192618
Merged-chr7-74647527-4	chr7	74647410	74647610	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-92730.0	NM_001038643	108116.0	Mm.425467	NM_023908	ENSMUSG00000025790	Slco3a1	5830414C08Rik|Anr1|MJAM|OATP-D|R75096|Slc21a11	solute carrier organic anion transporter family, member 3a1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-108934780-2	chr9	108934680	108934880	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1868.0	NM_025407	22273.0	Mm.335460	NM_025407	ENSMUSG00000025651	Uqcrc1	1110032G10Rik	ubiquinol-cytochrome c reductase core protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-10034159-2	chr9	10034059	10034259	+	570.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033359, intron 4 of 20)	intron (NM_001033359, intron 4 of 20)	139728.0	NR_105745	102466147.0		NR_105745	ENSMUSG00000098408	Mir6237	Gm27411|mmu-mir-6237	microRNA 6237	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44507507-2	chr9	44507407	44507607	+	582.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_030256, exon 7 of 9)	exon (NM_030256, exon 7 of 9)	8371.0	NM_030256	80288.0	Mm.370270	NM_030256	ENSMUSG00000063382	Bcl9l	B9L|BC003321|BCL9-2|DLNB11	B cell CLL/lymphoma 9-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-5243708-3	chr15	5243606	5243806	+	690.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_008965, exon 1 of 3)	5' UTR (NM_008965, exon 1 of 3)	481.0	NM_001136079	19219.0	Mm.18509	NM_008965	ENSMUSG00000039942	Ptger4	EP4|Ptgerep4	prostaglandin E receptor 4 (subtype EP4)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83156411-2	chr6	83156309	83156509	+	744.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_023790)	promoter-TSS (NM_023790)	5.0	NM_027948	71837.0	Mm.17621	NM_027948	ENSMUSG00000030030	1700003E16Rik	AU041756	RIKEN cDNA 1700003E16 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-87756208-1	chr11	87756108	87756308	+	1000.0	f0_c57.idr	promoter-TSS (NR_029555)	promoter-TSS (NR_029555)	-656.0	NR_029555	387160.0		NR_029555	ENSMUSG00000105196	Mir142	Mirn142|miR-142|mir-142a|mmu-mir-142|mmu-mir-142a	microRNA 142	ncRNA	4.71422738446457	4.94490896788624	4.70942881834352	4.75478800301404	4.7148291323309	4.33638642507193	4.91112728259858	4.56444439217941	-0.160562694896006	0.641651550119377	0.982599433509505
Merged-chr1-119895185-3	chr1	119895091	119895291	+	955.099976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17977.0	NM_175106	66343.0	Mm.49942	NM_175106	ENSMUSG00000036975	Tmem177	2300008B03Rik	transmembrane protein 177	protein-coding	2.3890806321908	3.29207805195798	1.64447236563454	1.59917994621375	2.89640677495233	3.01165774050309	2.23568782651287	2.00579816203536	0.334138053283152	0.707955467994519	0.998431161219273
Merged-chr18-60833453-2	chr18	60833353	60833553	+	601.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001198984, exon 8 of 26)	exon (NM_001198984, exon 8 of 26)	15511.0	NM_011552	21453.0	Mm.486251	NM_011552	ENSMUSG00000024613	Tcof1	AA408847|AW209012|treacle	treacle ribosome biogenesis factor 1	protein-coding	0.455156425748751	0.247975949879323	-0.25082352932945	-0.254377813317543	-0.112328211038858	-0.245177449730895	-0.249807399059057	-0.253756910583581	-2.89674860159572	0.229620837801011	1
Merged-chr2-147022210-4	chr2	147022119	147022319	+	991.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356402, intron 1 of 28)	intron (NM_001356402, intron 1 of 28)	9220.0	NM_001356402	24128.0	Mm.3065	NM_011917	ENSMUSG00000027433	Xrn2	-	5'-3' exoribonuclease 2	protein-coding	4.50671799347193	4.95620006068796	5.19129526930612	4.14568382863546	4.81826991227953	4.55601381123118	4.41299496056898	3.89736948595173	-0.360892255528099	0.36864226364329	0.862916999449085
Merged-chr17-10320248-2	chr17	10320148	10320348	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159517)	promoter-TSS (NM_001159517)	329.0	NR_037588	100526796.0	Mm.384135	NR_037588		Cahm	B930003M22Rik	colon adenocarcinoma hypermethylated RNA	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89234578-1	chr3	89234478	89234678	+	543.0	f1_c57bl6.idr	non-coding (NR_121683, exon 11 of 11)	non-coding (NR_121683, exon 11 of 11)	5522.0	NM_013605	17829.0	Mm.16193	NM_013605	ENSMUSG00000042784	Muc1	CD227|EMA|Muc-1	mucin 1, transmembrane	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106751655-4	chr11	106751562	106751762	+	863.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001271372, exon 2 of 7)	exon (NM_001271372, exon 2 of 7)	436.0	NM_001033435	380732.0	Mm.343952	NM_001033435	ENSMUSG00000040528	Milr1	Allergin-1|Gm885|Mca32	mast cell immunoglobulin like receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-57948121-4	chr4	57948016	57948216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011660, intron 3 of 4)	intron (NM_011660, intron 3 of 4)	8295.0	NM_011660	22166.0	Mm.260618	NM_011660	ENSMUSG00000028367	Txn1	ADF|AW550880|Trx1|Txn	thioredoxin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-164389755-4	chr2	164389651	164389851	+	964.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252563, intron 10 of 10)	CpG	-13443.0	NM_009036	19668.0	Mm.473794	NM_009036	ENSMUSG00000017007	Rbpjl	RBP-L|Rbpsuhl	recombination signal binding protein for immunoglobulin kappa J region-like	protein-coding	3.23033809030029	4.33132747723256	3.32110014404753	3.82754241528256	3.33686028299556	3.65065009779325	3.53139334903903	3.33659648020315	-0.42392959816965	0.42876439873925	0.903416445927044
Merged-chr12-95937933-2	chr12	95937833	95938033	+	553.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	109289.0	NR_103800	69423.0	Mm.46121	NM_027076		1700019M22Rik	-	NFX-like protein	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-28658700-4	chr19	28658585	28658785	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175459, intron 2 of 10)	L1MC4|LINE|L1	-19539.0	NR_045330	320176.0	Mm.406716	NR_045330	ENSMUSG00000097735	D930032P07Rik	-	RIKEN cDNA D930032P07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-58661162-4	chr6	58661071	58661271	+	917.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355477, intron 2 of 15)	intron (NM_001355477, intron 2 of 15)	64499.0	NM_011920	26357.0	Mm.333096	NM_011920	ENSMUSG00000029802	Abcg2	ABC15|ABCP|AI428558|BCRP|Bcrp1|MXR|MXR1	ATP binding cassette subfamily G member 2 (Junior blood group)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-53194621-4	chr5	53194527	53194727	+	917.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172710, intron 2 of 23)	intron (NM_172710, intron 2 of 23)	18825.0	NM_172710	231238.0	Mm.235020	NM_172710	ENSMUSG00000029189	Sel1l3	2310045A20Rik|AI429585|mKIAA0746	sel-1 suppressor of lin-12-like 3 (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-35940643-1	chr13	35940543	35940743	+	575.0	f0_balb.idr	Intergenic	Intergenic	-27263.0	NM_029628	76487.0	Mm.44745	NM_029628	ENSMUSG00000050423	Ppp1r3g	1600032L17Rik	protein phosphatase 1, regulatory (inhibitor) subunit 3G	protein-coding	0.489492686795562	0.433275676372985	0.226546843693262	1.11835817057723	0.610686633231723	0.438479111454576	0.228071366923256	0.222138047436822	-1.47721432949922	0.4234211487711	1
Merged-chr7-64076641-1	chr7	64076541	64076741	+	661.0	f1_c57bl6.idr	Intergenic	Intergenic	-77194.0	NM_001039104	17364.0	Mm.38875	NM_018752	ENSMUSG00000030523	Trpm1	4732499L03Rik|AI606771|Ltrpc1|Mlsn1	transient receptor potential cation channel, subfamily M, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-62330072-1	chr4	62329972	62330172	+	782.0	f0_balb.idr	intron (NM_001355385, intron 12 of 27)	intron (NM_001355385, intron 12 of 27)	30524.0	NM_001355385	338355.0	Mm.357792	NM_001045528	ENSMUSG00000066151	Fkbp15	BB131447|C430014M02Rik|FKBO133|FKBP-133|FKBP-15|FKBP133|mKIAA0674	FK506 binding protein 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-108873956-3	chr6	108873854	108874054	+	634.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER54B|LTR|ERVL	45313.0	NM_138677	192193.0	Mm.21596	NM_138677	ENSMUSG00000030104	Edem1	A130059K23Rik|EDEM|mKIAA0212	ER degradation enhancer, mannosidase alpha-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-46078110-3	chr1	46077995	46078195	+	660.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160386, intron 2 of 65)	MTD|LTR|ERVL-MaLR	11357.0	NM_001160386	227058.0	Mm.296880	NM_001160386	ENSMUSG00000041144	Dnah7b	Dnahc7b|Gm107	dynein, axonemal, heavy chain 7B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140396764-3	chr5	140396671	140396871	+	728.888855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7463.0	NM_172277	231834.0	Mm.27098	NM_172277	ENSMUSG00000029560	Snx8	B130023O14Rik	sorting nexin 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-57217693-3	chr16	57217605	57217805	+	783.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026254, intron 2 of 17)	intron (NM_026254, intron 2 of 17)	13761.0	NM_026254	67581.0	Mm.257819	NM_026254	ENSMUSG00000022749	Tbc1d23	4930451A13Rik|AU015720|AU043671|AU043778|D030022P07Rik|W51689	TBC1 domain family, member 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-85874182-6	chr10	85874085	85874285	+	823.027771	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133993, intron 1 of 14)	intron (NM_133993, intron 1 of 14)	2354.0	NM_133993	103136.0	Mm.18834	NM_133993	ENSMUSG00000001785	Pwp1	2310058A11Rik|2610205J09Rik|AI098170|AL022879|AV083409|AW550690	PWP1 homolog, endonuclein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72101108-4	chr6	72100989	72101189	+	882.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011375, intron 1 of 6)	intron (NM_011375, intron 1 of 6)	3481.0	NM_011375	20454.0	Mm.38248	NM_011375	ENSMUSG00000056091	St3gal5	3S-T|Siat9|[a]2	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139288963-1	chr5	139288863	139289063	+	556.0	f1_balb.idr	intron (NM_172723, intron 4 of 10)	intron (NM_172723, intron 4 of 10)	35466.0	NM_001163316	67604.0	Mm.270137	NM_026269	ENSMUSG00000025858	Get4	1110007L15Rik|AW412535|Cee	golgi to ER traffic protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-83573274-1	chr9	83573174	83573374	+	696.0	f1_balb.idr	intron (NM_172507, intron 1 of 3)	B1F|SINE|Alu	24936.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	0.809412855843366	1.37366366939437	0.496695469920353	0.486645103887889	0.472134935694293	1.11896716000759	0.499537226406696	1.69920773647342	0.850403587452952	0.614435309394468	0.977250439470701
Merged-chr8-57602053-3	chr8	57601953	57602153	+	799.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167981, intron 1 of 11)	intron (NM_001167981, intron 1 of 11)	-49700.0	NR_040698	100502619.0	Mm.393851	NR_040698		AW046200	-	expressed sequence AW046200	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55741235-2	chr14	55741135	55741335	+	559.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_026819, exon 5 of 9)	exon (NM_026819, exon 5 of 9)	4449.0	NM_026819	52585.0	Mm.21623	NM_026819	ENSMUSG00000002332	Dhrs1	1110029G07Rik|AW112170|D14Ertd484e	dehydrogenase/reductase (SDR family) member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-29754848-2	chr11	29754748	29754948	+	907.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_146016, exon 33 of 42)	exon (NM_146016, exon 33 of 42)	36285.0	NM_024226	68585.0	Mm.192580	NM_024226	ENSMUSG00000020458	Rtn4	1110020G17Rik|AA407876|AA409940|AA960376|ASY|C130026I10Rik|NOGO|NSP-CL|NgA|Nogo-A|Nogo-B|Nogo-C|mKIAA0886|mKIAA4153	reticulon 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-8944894-2	chr19	8944790	8944990	+	813.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_011842, intron 3 of 17)	intron (NM_011842, intron 3 of 17)	2970.0	NM_011842	23942.0	Mm.25339	NM_011842	ENSMUSG00000071646	Mta2	AW550797|Mata1l1|Mta1l1|mmta2	metastasis-associated gene family, member 2	protein-coding	-1.50811478453619	-0.99851579554048	-1.48484165847197	-1.49312904261012	-1.50577282675516	-1.47256636097272	-1.48255773576353	-1.49164560481169	-2.24133836997777	0.518237887813808	1
Merged-chr19-7270778-2	chr19	7270678	7270878	+	884.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_054048, exon 6 of 13)	exon (NM_054048, exon 6 of 13)	2499.0	NM_001320554	104383.0	Mm.283859	NM_054048	ENSMUSG00000024968	Rcor2	1A13|AW122124|CoREST|Rcor|Rcor1	REST corepressor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-181409792-4	chr2	181409678	181409878	+	947.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_028125)	TTS (NM_028125)	14610.0	NM_027656	72147.0	Mm.486504	NM_027656	ENSMUSG00000027583	Zbtb46	2610019F01Rik|4933406L05Rik|BZEL|Btbd4	zinc finger and BTB domain containing 46	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115859751-4	chr11	115859649	115859849	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	35691.0	NM_001252532	217325.0	Mm.290450	NM_145438	ENSMUSG00000020782	Llgl2	9130006H11Rik|Llglh2	LLGL2 scribble cell polarity complex component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-182354748-2	chr1	182354648	182354848	+	703.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-13142.0	NM_175127	67948.0	Mm.30737	NM_175127	ENSMUSG00000047539	Fbxo28	4833428J17Rik|5730505P19Rik|D1Ertd578e|Fbx28|mKIAA0483	F-box protein 28	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-39369569-4	chr18	39369469	39369669	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361073, intron 21 of 21)	intron (NM_001361073, intron 21 of 21)	117676.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4418920-2	chr16	4418820	4419020	+	694.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_009624, exon 2 of 11)	exon (NM_009624, exon 2 of 11)	1578.0	NM_001291910	11515.0	Mm.439750	NM_009624	ENSMUSG00000005580	Adcy9	AC9|ACtp10|AW125421|D16Wsu65e|mKIAA0520	adenylate cyclase 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76718655-1	chr15	76718555	76718755	+	596.0	f1_c57bl6.idr	exon (NM_198119, exon 3 of 6)	exon (NM_198119, exon 3 of 6)	3518.0	NM_198119	378937.0	Mm.289666	NM_198119	ENSMUSG00000033707	Lrrc24	6430402H13Rik	leucine rich repeat containing 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97412996-3	chr11	97412875	97413075	+	883.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37185.0	NM_021493	58996.0	Mm.394118	NM_021493	ENSMUSG00000049807	Arhgap23	A330041B18Rik	Rho GTPase activating protein 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-110372774-4	chr11	110372688	110372888	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26314.0	NM_001356345	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114906352-2	chr11	114906252	114906452	+	965.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	16311.0	NM_170758	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115696788-4	chr11	115696693	115696893	+	817.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001313936, intron 2 of 5)	intron (NM_001313936, intron 2 of 5)	2741.0	NM_001313937	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-87910063-2	chr3	87909991	87910191	+	624.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_001331051, intron 1 of 6)	intron (NM_001331051, intron 1 of 6)	3241.0	NM_001331052	15191.0	Mm.292208	NM_008231	ENSMUSG00000004897	Hdgf	AI118077|D3Ertd299e	hepatoma-derived growth factor	protein-coding	-0.299328868859621	0.21551159519342	-0.289828752323316	-0.293398409424911	-0.149095509542598	-0.284162913122399	0.402808966802503	-0.292774657047291	0.847172678430742	0.728793492510535	1
Merged-chr4-103104120-3	chr4	103104033	103104233	+	705.888855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146254, intron 1 of 16)	intron (NM_146254, intron 1 of 16)	10166.0	NM_146254	242584.0	Mm.374877	NM_146254	ENSMUSG00000035126	Wdr78	BC028975	WD repeat domain 78	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-32937648-2	chr5	32937548	32937748	+	793.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001170567, exon 26 of 43)	exon (NM_001170567, exon 26 of 43)	73927.0	NM_001170567	277854.0	Mm.101524	NM_177786	ENSMUSG00000037426	Depdc5	AV016528	DEP domain containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-23838889-2	chr14	23838789	23838989	+	597.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253364, intron 1 of 27)	intron (NM_001253364, intron 1 of 27)	165316.0	NM_001253375	16531.0	Mm.343607	NM_010610	ENSMUSG00000063142	Kcnma1	5730414M22Rik|BKCa|MaxiK|Slo|Slo1|mSlo|mSlo1	potassium large conductance calcium-activated channel, subfamily M, alpha member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100944455-4	chr7	100944365	100944565	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183168, intron 1 of 2)	intron (NM_183168, intron 1 of 2)	-12304.0	NM_001081116	207212.0	Mm.29954	NM_001081116	ENSMUSG00000032875	Arhgef17	8030463K16|AI428794|AW558066|BC035332|mKIAA0337	Rho guanine nucleotide exchange factor (GEF) 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-17346489-3	chr19	17346508	17346708	+	966.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010265, intron 1 of 2)	intron (NM_010265, intron 1 of 2)	-7103.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	-0.268604449986836	-0.505833522078455	-0.509091248790362	-0.511591743894016	-0.159119641922481	-0.505096581617888	-0.0744810329556305	-0.511155728369329	1.64901206706456	0.535698819847834	1
Merged-chr6-148352675-3	chr6	148352523	148352723	+	822.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198967, intron 5 of 19)	intron (NM_198967, intron 5 of 19)	-2033.0	NR_003634	66184.0	Mm.391542	NM_025405	ENSMUSG00000063171	Rps4l	1110033J19Rik|AA407494|Rps4y2	ribosomal protein S4-like	pseudo	-1.5061220274826	-1.47360709383584	-1.48343987814663	-1.49151681994238	-1.50383953926072	-1.47147628845725	-1.0170701920923	-1.49007105122263	2.15652851593596	0.535359572134045	1
Merged-chr12-81860881-4	chr12	81860756	81860956	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018814, intron 1 of 35)	CpG	826.0	NM_018814	54604.0	Mm.86584	NM_018814	ENSMUSG00000021140	Pcnx	2900024E21Rik|3526401J03Rik|AF096286|AI327143|AI413187|Pcnx1|Pcnxl1	pecanex homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-74888773-1	chr18	74888673	74888873	+	881.0	f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	72490.0	NM_010720	16891.0	Mm.299647	NM_010720	ENSMUSG00000053846	Lipg	3110013K01Rik|EL|lipase|mEDL	lipase, endothelial	protein-coding	-1.27480050717774	-0.604729833679879	-1.25573295904267	-1.26493563944758	-1.27428069156472	-1.24210192204986	-1.25319678955844	-1.26328836405502	-2.6632876257018	0.439827081912762	1
Merged-chr15-19751760-1	chr15	19751660	19751860	+	688.0	f1_balb.idr	Intergenic	Intergenic	566387.0	NR_155419	102639102.0	Mm.463245	NR_155419	ENSMUSG00000115803	Gm35496	-	predicted gene, 35496	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-14324839-4	chr2	14324718	14324918	+	966.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008625, intron 25 of 29)	RLTR16B_MM|LTR|ERVK	-63580.0	NM_001012305	277468.0	Mm.44662	NM_001012305	ENSMUSG00000036949	Slc39a12	AW046938|Gm731	solute carrier family 39 (zinc transporter), member 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-76201474-4	chr16	76201350	76201550	+	910.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	78837.0	NR_040575	78215.0	Mm.243885	NR_040575		4930578N18Rik	-	RIKEN cDNA 4930578N18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-15820536-2	chr17	15820436	15820636	+	571.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178615, intron 2 of 2)	intron (NM_178615, intron 2 of 2)	6050.0	NM_178615	68799.0	Mm.293466	NM_178615	ENSMUSG00000048027	Rgmb	1110059F19Rik|DRAGON	repulsive guidance molecule family member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-55535450-2	chr4	55535354	55535554	+	658.06665	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2979.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	-1.84436392554074	-1.52091821270385	-1.82290882857571	-1.83054882630441	-1.84220491470818	-1.81159244170985	-1.82080331928423	-1.82918127036376	-1.56828060379516	0.655578384384393	1
Merged-chr5-17998104-2	chr5	17998004	17998204	+	800.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081143, intron 3 of 7)	intron (NM_001081143, intron 3 of 7)	35534.0	NM_001081143	242851.0	Mm.332230	NM_001081143	ENSMUSG00000028777	Gnat3	Ggust|Gtn	guanine nucleotide binding protein, alpha transducing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65074900-2	chr9	65074800	65075000	+	875.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028906, intron 17 of 20)	L3b|LINE|CR1	-26586.0	NM_020043	56741.0	Mm.209041	NM_020043	ENSMUSG00000032816	Igdcc4	DDM36|Nope	immunoglobulin superfamily, DCC subclass, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-7662697-4	chr10	7662594	7662794	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_030698)	promoter-TSS (NR_030698)	-677.0	NR_030698	320642.0	Mm.398806	NR_030698		A630066F11Rik	-	RIKEN cDNA A630066F11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-57718394-4	chr14	57718243	57718443	+	764.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015771, intron 2 of 7)	intron (NM_015771, intron 2 of 7)	16075.0	NM_153382	50523.0	Mm.347899	NM_015771	ENSMUSG00000021959	Lats2	4932411G09Rik|AV277261|AW228608	large tumor suppressor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27165610-4	chr17	27165522	27165722	+	893.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173027, intron 1 of 5)	intron (NM_173027, intron 1 of 5)	2142.0	NM_173027	271424.0	Mm.209679	NM_173027	ENSMUSG00000024210	Ip6k3	D830007E07Rik|Ihpk3	inositol hexaphosphate kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-31743204-2	chr9	31743104	31743304	+	620.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MERV1_I-int|LTR|ERV1	170081.0	NM_013800	12023.0	Mm.261044	NM_013800	ENSMUSG00000032033	Barx2	2310006E12Rik|Barx2b	BarH-like homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59829942-4	chr15	59829860	59830060	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35001.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-42860192-2	chr9	42860092	42860292	+	862.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175481, intron 1 of 20)	intron (NM_175481, intron 1 of 20)	84179.0	NM_175481	110637.0	Mm.370291	NM_175481	ENSMUSG00000032017	Grik4	6330551K01Rik|GluK4|GluRgamma1|KA-1|KA1	glutamate receptor, ionotropic, kainate 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127609835-5	chr10	127609745	127609945	+	954.1333619999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 3 of 88)	intron (NM_008512, intron 3 of 88)	11303.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	1.05033041817428	1.19936188601734	1.01459014179032	0.65597351785896	0.804217179162917	0.676527562705377	1.48911538528841	1.23649169214702	0.486330276712259	0.739749056505626	0.998431161219273
Merged-chr12-4151209-4	chr12	4151107	4151307	+	930.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159537, intron 2 of 21)	intron (NM_001159537, intron 2 of 21)	17054.0	NM_138305	104111.0	Mm.489807	NM_138305	ENSMUSG00000020654	Adcy3	AC3|mKIAA0511	adenylate cyclase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-82398317-4	chr8	82398218	82398418	+	800.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001254747, intron 1 of 7)	intron (NM_001254747, intron 1 of 7)	4268.0	NM_001254747	16168.0	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	2.97174018433205	3.25600990762608	1.51407221190955	2.17558320997017	3.40325361928829	3.86143992577643	2.06224158740942	3.62878731118799	1.2449144687173	0.112106477005716	0.524319196120547
Merged-chr11-59807613-2	chr11	59807513	59807713	+	766.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146018, intron 2 of 12)	intron (NM_146018, intron 2 of 12)	1988.0	NM_001271357	216805.0	Mm.339640	NM_146018	ENSMUSG00000032633	Flcn	AU014660|B430214A04Rik|Bhd|FLCL	folliculin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-90060492-4	chr9	90060396	90060596	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007801, exon 2 of 12)	exon (NM_007801, exon 2 of 12)	6229.0	NM_001312649	13036.0	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	3.87742920753404	4.3492091964869	5.28842739932564	4.65295158490352	4.38245391933048	4.50513692445701	5.17283218770396	4.5431041940174	0.0604267805357951	0.884168186415843	0.998431161219273
Merged-chr2-103424361-2	chr2	103424261	103424461	+	623.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010125, intron 1 of 6)	intron (NM_010125, intron 1 of 6)	293.0	NM_010125	13711.0	Mm.20888	NM_010125	ENSMUSG00000027186	Elf5	ESE-2|ESE-5|ESE-5.	E74-like factor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-12206774-4	chr15	12206738	12206938	+	862.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356498, intron 1 of 15)	intron (NM_001356498, intron 1 of 15)	1810.0	NM_172958	268783.0	Mm.54460	NM_172958	ENSMUSG00000039458	Mtmr12	3Pap|4932703C11|C730015A02Rik|Pip3ap|mKIAA1682	myotubularin related protein 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-81634463-2	chr9	81634363	81634563	+	954.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_040397, intron 1 of 3)	intron (NR_040397, intron 1 of 3)	-1911.0	NM_010482	15551.0	Mm.445308	NM_010482	ENSMUSG00000049511	Htr1b	-	5-hydroxytryptamine (serotonin) receptor 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-120129595-2	chr4	120129517	120129717	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010657, intron 7 of 8)	intron (NM_010657, intron 7 of 8)	-31589.0	NM_007902	13615.0	Mm.284855	NM_007902	ENSMUSG00000028635	Edn2	ET-2|PPET2|VIC	endothelin 2	protein-coding	2.90809855518848	2.87701235376842	2.97803099548833	2.89601472258155	1.72595237957224	2.65134616973314	3.00081399470981	2.91061906362878	-0.485072876413343	0.50636840980714	0.942410782967849
Merged-chr7-90410138-2	chr7	90410038	90410238	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001289584, exon 20 of 20)	3' UTR (NM_001289584, exon 20 of 20)	-16174.0	NM_027298	70054.0	Mm.307198	NM_027298	ENSMUSG00000044362	Ccdc89	1700019B01Rik|AU022100|BOIP	coiled-coil domain containing 89	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-69822304-1	chr2	69822204	69822404	+	545.0	f1_balb.idr	promoter-TSS (NM_177784)	promoter-TSS (NM_177784)	-66.0	NM_177784	277396.0	Mm.138073	NM_177784	ENSMUSG00000042155	Klhl23	C130068N17Rik	kelch-like 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-127205116-2	chr2	127205016	127205216	+	739.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198630, intron 1 of 1)	intron (NM_198630, intron 1 of 1)	3164.0	NM_198630	329509.0	Mm.120738	NM_198630	ENSMUSG00000044145	1810024B03Rik	-	RIKEN cDNA 1810024B03 gene	protein-coding	3.92784000362222	3.72315654796928	2.64286686982271	3.50388186579524	3.55160118097481	3.67135977269235	2.66503537402043	3.52146092002518	-0.198988081084627	0.735013753979052	0.998431161219273
Merged-chr1-85236264-1	chr1	85236164	85236364	+	851.0	f1_balb.idr	Intergenic	Lx5|LINE|L1	34302.0	NM_175219	620078.0	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik	RIKEN cDNA C130026I21 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-66538075-3	chr6	66537971	66538171	+	897.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355624, intron 3 of 5)	intron (NM_001355624, intron 3 of 5)	2850.0	NM_001355624	56150.0	Mm.489653	NM_019499	ENSMUSG00000029910	Mad2l1	AA673185|MAD2	MAD2 mitotic arrest deficient-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-92906959-4	chr1	92906879	92907079	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175118)	promoter-TSS (NM_175118)	-10.0	NM_175118	67446.0	Mm.46179	NM_175118	ENSMUSG00000047067	Dusp28	0710001B24Rik|AV005521	dual specificity phosphatase 28	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-3664349-2	chr7	3664272	3664472	+	877.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_027203, intron 1 of 3)	intron (NM_027203, intron 1 of 3)	1468.0	NM_027203	69757.0	Mm.389782	NM_027203	ENSMUSG00000078813	Leng1	1500001K17Rik	leukocyte receptor cluster (LRC) member 1	protein-coding	-0.341548005186802	-0.461950676844805	-0.465207319575118	-0.0758052411959477	-0.337922102115331	-0.461213633920307	-0.464490881199752	-0.0703859597097778	0.0318375429219428	0.989636970963125	1
Merged-chr9-114394921-4	chr9	114394826	114395026	+	896.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4214.0	NM_019922	56693.0	Mm.20904	NM_019922	ENSMUSG00000032431	Crtap	5730529N23Rik|CASP|Leprel3|P3h5	cartilage associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19824333-4	chr7	19824230	19824430	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1575.0	NM_033601	12051.0	Mm.439658	NM_033601	ENSMUSG00000053175	Bcl3	AI528691|Bcl-3	B cell leukemia/lymphoma 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-84288681-4	chr12	84288580	84288780	+	679.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252625, intron 1 of 9)	B3|SINE|B2	3384.0	NM_001252626	77219.0	Mm.246127	NM_029880	ENSMUSG00000072946	Ptgr2	1810016I24Rik|9130222H03Rik|9630002F03Rik|AI838763|B830026H24Rik|PGR-2|PRG-2|Zadh1	prostaglandin reductase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-20009412-2	chr10	20009312	20009512	+	594.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008580, intron 2 of 29)	intron (NM_008580, intron 2 of 29)	74886.0	NM_008580	26408.0	Mm.6595	NM_008580	ENSMUSG00000071369	Map3k5	7420452D20Rik|ASK|ASK1|MAPKKK5|Mekk5	mitogen-activated protein kinase kinase kinase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45463504-2	chr7	45463404	45463604	+	897.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_007527, intron 4 of 5)	intron (NM_007527, intron 4 of 5)	3394.0	NM_007527	12028.0	Mm.19904	NM_007527	ENSMUSG00000003873	Bax	-	BCL2-associated X protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83639235-3	chr11	83639173	83639373	+	855.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10105.0	NM_011337	20302.0	Mm.1282	NM_011337	ENSMUSG00000000982	Ccl3	AI323804|G0S19-1|LD78alpha|MIP-1alpha|MIP1-(a)|MIP1-alpha|Mip1a|Scya3	chemokine (C-C motif) ligand 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36733825-5	chr18	36733773	36733973	+	977.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6A|LTR|ERVK	-1197.0	NM_028036	71983.0	Mm.135188	NM_028036	ENSMUSG00000006850	Tmco6	2410015B03Rik	transmembrane and coiled-coil domains 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-98082536-4	chr16	98082453	98082653	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015491)	promoter-TSS (NR_015491)	-114.0	NR_015491	320586.0	Mm.442230	NR_015491		A630089N07Rik	-	RIKEN cDNA A630089N07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117363333-2	chr8	117363233	117363433	+	814.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028941, intron 1 of 20)	intron (NM_028941, intron 1 of 20)	14163.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-8645711-3	chr4	8645613	8645813	+	780.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44693.0	NM_001277149	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-123041251-4	chr8	123041137	123041337	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 1 of 12)	intron (NM_001081379, intron 1 of 12)	1047.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-32735215-2	chr9	32735115	32735315	+	572.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038642, intron 5 of 6)	intron (NM_001038642, intron 5 of 6)	39173.0	NM_001038642	23871.0	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-172377227-4	chr1	172377111	172377311	+	963.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026234, exon 1 of 1)	exon (NM_026234, exon 1 of 1)	680.0	NM_026234	67556.0	Mm.26612	NM_026234	ENSMUSG00000050229	Pigm	4933437L05Rik|AI644422|AV302080|C920011G20Rik	phosphatidylinositol glycan anchor biosynthesis, class M	protein-coding	2.85280876553491	2.70560724003136	2.6156864117161	3.2077637461531	2.434186086329	2.5972579875763	1.81722122566654	2.85437599495507	-0.770531734789231	0.30230980654327	0.804363402932686
Merged-chr5-30796288-2	chr5	30796188	30796388	+	973.666626	f1_balb.idr|f1_c57bl6.idr	exon (NM_001356948, exon 13 of 13)	exon (NM_001356948, exon 13 of 13)	-18353.0	NM_133350	100732.0	Mm.332295	NM_133350	ENSMUSG00000029166	Mapre3	AI790651|EB2|EB3|EBF3|RP3	microtubule-associated protein, RP/EB family, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-114723546-4	chr9	114723434	114723634	+	736.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_146229, exon 13 of 13)	3' UTR (NM_146229, exon 13 of 13)	-7669.0	NM_026036	67213.0	Mm.28858	NM_026036	ENSMUSG00000032434	Cmtm6	2810051A14Rik|AA536733|Cklfsf6	CKLF-like MARVEL transmembrane domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-88043024-3	chr17	88042922	88043122	+	920.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081034, intron 1 of 22)	intron (NM_001081034, intron 1 of 22)	21910.0	NM_001348248	225055.0	Mm.386857	NM_001081034	ENSMUSG00000005371	Fbxo11	C80048|Jf	F-box protein 11	protein-coding	0.378951834748547	0.127523728540271	0.888736316931223	0.116756490502396	0.385744714997215	0.12889156898726	0.59016639166231	0.117576867096918	-0.686838643732806	0.732977854239142	1
Merged-chr2-27351351-2	chr2	27351251	27351451	+	938.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_133905, intron 1 of 29)	RMER19B|LTR|ERVK	76257.0	NR_133905	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-161139690-4	chr1	161139578	161139778	+	945.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-3034.0	NM_028664	73844.0	Mm.38830	NM_028664	ENSMUSG00000044835	Ankrd45	4933409K03Rik	ankyrin repeat domain 45	protein-coding	3.86240841930012	2.6242787856441	3.74522683485326	4.05465145467755	3.34345654628812	3.36504436814954	3.90805055880191	3.85535375927091	-0.058064952956243	0.915426441940875	0.998431161219273
Merged-chr3-122251172-1	chr3	122251072	122251272	+	576.0	f0_balb.idr	intron (NM_008129, intron 1 of 6)	intron (NM_008129, intron 1 of 6)	5615.0	NM_008129	14630.0	Mm.292676	NM_008129	ENSMUSG00000028124	Gclm	AI649393|Gcmc|Glclr	glutamate-cysteine ligase, modifier subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-51084013-4	chr14	51083928	51084128	+	942.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7049.0	NM_001161731	11727.0	Mm.202665	NM_007447	ENSMUSG00000072115	Ang	AI385586|Ang1|Rnase5|Rnase5a	angiogenin, ribonuclease, RNase A family, 5	protein-coding	4.36287603103612	3.8670518355908	4.37799442039916	3.13510803441285	3.93278582294179	3.80791465461776	4.72214069812099	4.55408439927588	0.378893682147714	0.426972615067388	0.902392427013133
Merged-chr19-29527025-2	chr19	29526925	29527125	+	640.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081319, intron 1 of 25)	B1F1|SINE|Alu	4743.0	NM_001081319	226089.0	Mm.353838	NM_177641	ENSMUSG00000038658	Ric1	C030046E11Rik|C130057E09Rik|Kiaa1432	RAB6A GEF complex partner 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34283881-2	chr17	34283850	34284050	+	767.200012	f1_balb.idr|f1_c57bl6.idr	intron (NM_010378, intron 2 of 4)	intron (NM_010378, intron 2 of 4)	3821.0	NM_010378	14960.0	Mm.235338	NM_010378	ENSMUSG00000036594	H2-Aa	Aalpha|H-2Aa|H2Aa|I-Aalpha|IAalpha|Ia-1|Ia1	histocompatibility 2, class II antigen A, alpha	protein-coding	2.71604171955159	4.3276882909276	2.96397874200492	3.08732462000836	2.94686063547021	4.06128415579703	2.86380521340853	2.48228419832532	-0.324600305493119	0.636266391250794	0.982417279970648
Merged-chr2-132003233-2	chr2	132003133	132003333	+	678.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175445, intron 6 of 10)	intron (NM_175445, intron 6 of 10)	26755.0	NM_175445	215653.0	Mm.204737	NM_175445	ENSMUSG00000027339	Rassf2	3830431H01Rik|9030412M04Rik|AI852669|AW495050	Ras association (RalGDS/AF-6) domain family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-54527863-3	chr4	54527748	54527948	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-420097.0	NM_172867	242466.0	Mm.102904	NM_172867	ENSMUSG00000060206	Zfp462	6030417H05|9430078C22Rik|Gt4-2|Zfpip	zinc finger protein 462	protein-coding	4.06987887588433	4.17497233416235	3.75633069189958	1.90329386282866	6.60222011768777	7.02529345847695	6.42489243907772	7.03264374014784	3.546920044779	1.09808095614618e-06	6.90984719152544e-05
Merged-chr9-120491679-4	chr9	120491590	120491790	+	872.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026892)	promoter-TSS (NM_026892)	-916.0	NM_026892	68969.0	Mm.28753	NM_026892	ENSMUSG00000006941	Eif1b	1500010M16Rik|3110001N14Rik|Gc20	eukaryotic translation initiation factor 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16452824-4	chr7	16452748	16452948	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026938)	promoter-TSS (NM_026938)	69.0	NM_026938	69094.0	Mm.29633	NM_026938	ENSMUSG00000019158	Tmem160	1810008O21Rik	transmembrane protein 160	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-69524304-1	chr13	69524204	69524404	+	970.0	f1_c57bl6.idr	intron (NM_198600, intron 1 of 12)	intron (NM_198600, intron 1 of 12)	9560.0	NM_198600	210106.0	Mm.315959	NM_198600	ENSMUSG00000034575	Papd7	LAK-1|POLK|Pols|TRF4|TRF4-1	PAP associated domain containing 7	protein-coding	1.04478396217105	1.42866213010533	0.664812521037243	1.22078514166944	1.15858163095054	1.05580154555447	0.66699775784528	0.835528082884632	-0.839169089615274	0.56671676349566	0.962562732139494
Merged-chr11-75166975-2	chr11	75166876	75167076	+	964.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001098203, exon 2 of 2)	exon (NM_001098203, exon 2 of 2)	1176.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	0.292989341619994	0.528930805199883	0.157778575283057	0.152720553628127	0.297482360113464	1.01514642469115	0.345866717396531	0.326095703758082	1.70824920613386	0.346196471650901	1
Merged-chr3-94613520-2	chr3	94613420	94613620	+	950.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011656, exon 13 of 13)	3' UTR (NM_011656, exon 13 of 13)	-30804.0	NM_029721	76742.0	Mm.28160	NM_029721	ENSMUSG00000028136	Snx27	5730552M22Rik|ESTM45|ESTM47|R75405	sorting nexin family member 27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-56262226-4	chr4	56262135	56262335	+	763.224976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	479190.0	NM_025271	11471.0	Mm.251434	NM_025271	ENSMUSG00000070980	Actl7b	Gm26657|Tact1	actin-like 7b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-108434428-4	chr5	108434265	108434465	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007507)	promoter-TSS (NM_007507)	34.0	NR_154996	11958.0	Mm.136093	NM_007507	ENSMUSG00000050856	Atp5k	2610008D24Rik|Atp5i|Lfm1	ATP synthase, H+ transporting, mitochondrial F1F0 complex, subunit E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-77846459-4	chr15	77846363	77846563	+	926.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-4288.0	NM_022410	17886.0	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-23819026-2	chr11	23818926	23819126	+	592.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L4_C_Mam|LINE|RTE-X	-48056.0	NM_009044	19696.0	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46670874-2	chr19	46670774	46670974	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007809, intron 2 of 7)	intron (NM_007809, intron 2 of 7)	2126.0	NM_007809	13074.0	Mm.1262	NM_007809	ENSMUSG00000003555	Cyp17a1	Cyp17|p450c17	cytochrome P450, family 17, subfamily a, polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-44351556-4	chr17	44351455	44351655	+	929.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	162983.0	NM_172621	224796.0	Mm.37666	NM_172621	ENSMUSG00000023959	Clic5	5730531E12Rik|B330005L24|Gm322|jbg|nmf318	chloride intracellular channel 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-13556948-2	chr2	13556848	13557048	+	914.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-12284.0	NM_010067	13434.0	Mm.6979	NM_010067	ENSMUSG00000026723	Trdmt1	Dnmt2|Rnmt2	tRNA aspartic acid methyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-97845765-3	chr16	97845672	97845872	+	756.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359077, intron 1 of 23)	intron (NM_001359077, intron 1 of 23)	5455.0	NM_144789	114604.0	Mm.328741	NM_144789	ENSMUSG00000014039	Prdm15	C21orf83|E130018M06Rik|ORF62|Zfp298	PR domain containing 15	protein-coding	1.70299006112992	1.37069630931277	2.1084804068852	2.89433004120143	1.94674061884985	1.38015223166581	1.08027209852534	1.66662272807556	-1.5817254117825	0.147020319733289	0.597139402897766
Merged-chr6-86871978-3	chr6	86871879	86872079	+	813.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040106, intron 1 of 20)	intron (NM_001040106, intron 1 of 20)	22462.0	NM_001040106	269774.0	Mm.221038	NM_177762	ENSMUSG00000057230	Aak1	5530400K14Rik|9630042K20|AU067724|AU067726|BC028270|C79663|D6Ertd245e|R75501|mKIAA1048	AP2 associated kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-174072406-1	chr2	174072306	174072506	+	959.0	f1_c57bl6.idr	Intergenic	Charlie22a|DNA|hAT-Charlie	-4645.0	NM_172675	228960.0	Mm.277977	NM_172675	ENSMUSG00000027522	Stx16	4930401D03|5430410K23Rik|6330500A18Rik|AI648908|AW553605|Syn16	syntaxin 16	protein-coding	0.462902805887857	0.450589626041425	0.00543327688130863	-0.177986180675758	-0.18339376150673	-0.168092715605883	-0.173069455906423	-0.177317992598508	-3.82683268702089	0.0973694985953787	1
Merged-chr2-5321070-2	chr2	5320970	5321170	+	599.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290374, intron 5 of 9)	RMER13B|LTR|ERVK	-58320.0	NR_030601	100124465.0		NR_030601	ENSMUSG00000078031	Mir466d	Mirn466d	microRNA 466d	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-24593709-4	chr16	24593636	24593836	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 4 of 12)	intron (NM_178665, intron 4 of 12)	64422.0	NR_038091	624582.0	Mm.439775	NR_038091		Morf4l1-ps1	A730098P11Rik	mortality factor 4 like 1, pseudogene 1	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-108595811-2	chr8	108595711	108595911	+	606.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11134.0	NR_077224	109215.0	Mm.65282	NR_077224	ENSMUSG00000110613	Lncbate1	3010033K07Rik|Lnc-BATE1	brown adipose tissue enriched long non-coding RNA 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-74253929-4	chr5	74253872	74254072	+	831.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114660, intron 5 of 8)	intron (NM_001114660, intron 5 of 8)	58646.0	NM_026878	68939.0	Mm.293316	NM_026878	ENSMUSG00000049907	Rasl11b	1190017B18Rik	RAS-like, family 11, member B	protein-coding	1.38377281506937	1.01618417643462	0.615571588889028	0.607217272329029	1.47318861087566	0.628684839619657	0.818919806994842	1.20432214554553	0.536095385165542	0.734224808781172	0.998431161219273
Merged-chr1-165616076-2	chr1	165615976	165616176	+	702.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083897, intron 1 of 5)	intron (NM_001083897, intron 1 of 5)	18465.0	NM_001001880	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-144207730-3	chr3	144207632	144207832	+	868.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2477.0	NM_010723	16911.0	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-55165402-2	chr10	55165302	55165502	+	581.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-941515.0	NM_001163833	73390.0	Mm.181475	NM_133751	ENSMUSG00000047669	Msl3l2	1700060H10Rik	MSL3 like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-23773284-4	chr18	23773166	23773366	+	730.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162941, intron 2 of 7)	intron (NM_001162941, intron 2 of 7)	1723.0	NR_105778	102465185.0		NR_105778	ENSMUSG00000098607	Mir6360	Gm27296|mmu-mir-6360	microRNA 6360	ncRNA	1.81724648906234	1.07237689494102	2.83840148073452	1.64746322253401	2.30151750472563	1.07868667268073	1.05006890920122	2.25939775160294	-0.479576957958064	0.692968027415049	0.99740158133691
Merged-chr2-150783014-3	chr2	150782908	150783108	+	888.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-3788.0	NM_153781	110078.0	Mm.222584	NM_153781	ENSMUSG00000033059	Pygb	-	brain glycogen phosphorylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-147895859-2	chr2	147895759	147895959	+	678.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	149605.0	NM_001291067	15376.0	Mm.938	NM_010446	ENSMUSG00000037025	Foxa2	HNF3-beta|HNF3beta|Hnf-3b|Hnf3b|Tcf-3b|Tcf3b	forkhead box A2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-79615751-2	chr12	79615651	79615851	+	768.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	308982.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-14178936-1	chr10	14178836	14179036	+	910.0	f0_balb.idr	Intergenic	Intergenic	212557.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	0.620728066209991	1.11541083243111	1.22929923691573	0.641529848519986	0.819578266741588	2.05062345628159	1.38071596946279	0.861633395030415	1.76236384929564	0.217935713741854	0.708842567601735
Merged-chr15-55557692-1	chr15	55557592	55557792	+	1000.0	f0_balb.idr	promoter-TSS (NM_026759)	promoter-TSS (NM_026759)	284.0	NM_001168250	105837.0	Mm.390829	NM_134092	ENSMUSG00000022369	Mtbp	AI429604|MDM2BP	Mdm2, transformed 3T3 cell double minute p53 binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-66514541-4	chr17	66514412	66514612	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024448, intron 1 of 5)	intron (NM_024448, intron 1 of 5)	5158.0	NM_024448	19328.0	Mm.248313	NM_024448	ENSMUSG00000023460	Rab12	2900054P15Rik|AW555448|C77700	RAB12, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-109123353-4	chr4	109123248	109123448	+	997.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355190, intron 2 of 21)	RLTR19-int|LTR|ERVK	-5312.0	NM_001134791	100273.0	Mm.366315	NM_133885	ENSMUSG00000028559	Osbpl9	2600011I06Rik|AU015843|Orp-9	oxysterol binding protein-like 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-62627249-3	chr13	62627155	62627355	+	710.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-3073.0	NM_173381	211378.0	Mm.247448	NM_173381	ENSMUSG00000072066	6720489N17Rik	9330128I06	RIKEN cDNA 6720489N17 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-72296753-2	chr8	72296643	72296843	+	902.5	f0_balb.idr|f1_balb.idr	Intergenic	PB1D9|SINE|Alu	-22319.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	2.69252105432826	3.71845524541544	2.92651186004879	3.04545386348381	3.52996851225909	2.929697855141	2.184847115905	3.52079849564336	0.013904236363224	0.983450011422034	0.998431161219273
Merged-chr8-128605791-4	chr8	128605617	128605817	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	-79937.0	NM_010578	16412.0	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	-0.542707213331262	-1.0782195565565	-1.08937350298794	-1.09644248016066	-0.953371977117728	-1.07580244983501	-1.08684849400341	-1.09610392398499	-1.71150422158612	0.598216698606419	1
Merged-chr2-174335877-4	chr2	174335788	174335988	+	845.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077507, intron 2 of 10)	intron (NM_001077507, intron 2 of 10)	5799.0	NM_001077510	14683.0	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-153914060-2	chr3	153913960	153914160	+	816.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-1094.0	NR_028094	19352.0	Mm.277831	NM_011231	ENSMUSG00000038975	Rabggtb	-	Rab geranylgeranyl transferase, b subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-54626650-3	chr11	54626554	54626754	+	693.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175258, exon 11 of 28)	exon (NM_175258, exon 11 of 28)	30508.0	NM_001252497	192786.0	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-161478481-2	chr1	161478381	161478581	+	690.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16176.0	NM_183391	240873.0	Mm.276823	NM_183391	ENSMUSG00000066755	Tnfsf18	Gitrl|Tnlg2a	tumor necrosis factor (ligand) superfamily, member 18	protein-coding	0.762016911245796	0.401279530905004	0.971158081609877	1.02787050107313	0.961860614594828	0.402957890250222	0.395469409307274	0.389066351928635	-1.40965405191575	0.442694913708587	1
Merged-chr10-67640884-3	chr10	67640796	67640996	+	736.888855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-68937.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-46269136-4	chr11	46269013	46269213	+	855.270874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252459, intron 11 of 30)	intron (NM_001252459, intron 11 of 30)	33556.0	NM_177075	320116.0	Mm.39600	NM_177075	ENSMUSG00000048721	Fndc9	C030019I05Rik	fibronectin type III domain containing 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-70531031-4	chr18	70530946	70531146	+	996.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001136090)	promoter-TSS (NM_001136090)	-725.0	NM_001289515	26447.0	Mm.244352	NM_011972	ENSMUSG00000038425	Poli	Rad30b	polymerase (DNA directed), iota	protein-coding	4.82658399574503	3.70488466065291	3.20373099132119	3.69927320380143	3.77984562184775	2.95568130286213	3.11495717257197	3.12522387309059	-1.06021923458126	0.0678090882619973	0.390515251664373
Merged-chr11-107470285-2	chr11	107470185	107470385	+	1000.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_153311, exon 1 of 10)	non-coding (NR_153311, exon 1 of 10)	435.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-79786353-4	chr7	79786206	79786406	+	895.633301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001037927)	TTS (NM_001037927)	7284.0	NM_008588	17292.0	Mm.1404	NM_008588	ENSMUSG00000030544	Mesp1	bHLHc5	mesoderm posterior 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122645427-2	chr5	122645327	122645527	+	876.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038845, intron 1 of 12)	L1MB8|LINE|L1	1516.0	NM_001038887	18439.0	Mm.42026	NM_011027	ENSMUSG00000029468	P2rx7	AI467586|P2X(7)|P2X7R	purinergic receptor P2X, ligand-gated ion channel, 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95766183-2	chr3	95766083	95766283	+	704.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081293, exon 11 of 11)	exon (NM_001081293, exon 11 of 11)	-11206.0	NR_151588	71807.0	Mm.271754	NM_027931	ENSMUSG00000028107	Tars2	2610024N01Rik|AI429208|Tarsl1|thrRS	threonyl-tRNA synthetase 2, mitochondrial (putative)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-29929771-3	chr6	29929632	29929832	+	766.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037740, intron 8 of 20)	intron (NM_001037740, intron 8 of 20)	12719.0	NM_001037740	320609.0	Mm.56097	NM_177204	ENSMUSG00000039629	Strip2	D330017J20Rik|Fam40b	striatin interacting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-23732516-3	chr13	23732393	23732593	+	787.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6314.0	NM_015786	50708.0	Mm.193539	NM_015786	ENSMUSG00000036181	Hist1h1c	0610008C09Rik|H1.2|H1c|H1f2|H1var1|His1a	histone cluster 1, H1c	protein-coding	1.50547555578499	0.450306612511016	1.44750395660482	0.428693862362577	0.414976538545795	0.453001231321481	0.440895023817303	1.20311772722805	-1.64901072297733	0.368603268598147	0.862916999449085
Merged-chr13-100854358-4	chr13	100854214	100854414	+	859.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20887.0	NM_022885	69048.0	Mm.402215	NM_022885	ENSMUSG00000021629	Slc30a5	1810010K08Rik|AF233321|ZNT5|ZTL1|ZnT-5|Zntl1	solute carrier family 30 (zinc transporter), member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-82881566-3	chr7	82881475	82881675	+	778.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14242.0	NM_175366	108797.0	Mm.306789	NM_175366	ENSMUSG00000057706	Mex3b	4931439A04Rik|M-04814|Rkhd3|mKIAA2009	mex3 RNA binding family member B	protein-coding	3.28063688657908	2.0508514472665	3.73709625299332	4.22133161505741	1.99652206663875	1.49245063079298	3.02991393416916	2.1192706110144	-2.1416545869896	0.00757227236436637	0.0894213817201454
Merged-chr17-23822400-2	chr17	23822300	23822500	+	749.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_039586)	promoter-TSS (NR_039586)	-891.0	NR_039586	100628593.0		NR_039586	ENSMUSG00000092981	Mir5125	mmu-mir-5125|mu-mir-5125	microRNA 5125	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-105093989-2	chr1	105093889	105094089	+	853.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	-262018.0	NR_151539	100504568.0	Mm.321153	NR_151538	ENSMUSG00000097482	Gm17634	-	predicted gene, 17634	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-7268919-4	chr19	7268828	7269028	+	950.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_054048, exon 2 of 13)	5' UTR (NM_054048, exon 2 of 13)	649.0	NM_001320554	104383.0	Mm.283859	NM_054048	ENSMUSG00000024968	Rcor2	1A13|AW122124|CoREST|Rcor|Rcor1	REST corepressor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126464183-1	chr8	126464083	126464283	+	587.0	f0_c57.idr	intron (NM_001159907, intron 4 of 29)	RMER20A|LTR|ERVK	10882.0	NM_001159907	212728.0	Mm.482479	NM_001159907	ENSMUSG00000090290	Tarbp1	Gm17296|Gm179	TAR RNA binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-113615159-4	chr13	113615035	113615235	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130796, intron 1 of 1)	intron (NM_130796, intron 1 of 1)	3429.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-15724112-3	chr17	15724084	15724284	+	690.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007690, intron 2 of 35)	B2_Mm1t|SINE|B2	19217.0	NM_007690	12648.0	Mm.8137	NM_007690	ENSMUSG00000023852	Chd1	4930525N21Rik|AI851787|AW555109	chromodomain helicase DNA binding protein 1	protein-coding	-1.18378942727406	-1.15669478905697	-0.457913181653105	-1.17806440097404	-1.18323730008524	-1.15415234459186	-1.16577117532349	-1.17633933179771	-2.81844548480871	0.412768592413622	1
Merged-chr15-57925168-2	chr15	57925068	57925268	+	896.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356310, intron 3 of 19)	intron (NM_001356310, intron 3 of 19)	12969.0	NM_001356310	210544.0	Mm.390835	NM_199300	ENSMUSG00000022364	Tbc1d31	4B3|D330013L20Rik|Gm85|Wdr67	TBC1 domain family, member 31	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-68437245-2	chr2	68437145	68437345	+	957.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016866, intron 1 of 17)	intron (NM_016866, intron 1 of 17)	34736.0	NM_016866	53416.0	Mm.198414	NM_016866	ENSMUSG00000027030	Stk39	AW227544|AW556857|DCHT|RF005|Rnl5|SPAK	serine/threonine kinase 39	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-40135215-3	chr11	40135106	40135306	+	972.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16_Mm|LTR|ERVK	557476.0	NM_134017	108645.0	Mm.293771	NM_134017	ENSMUSG00000042032	Mat2b	1110064C04Rik|2410018D16Rik|AI182287|AU022853|MAT-II|MATIIbeta|TGR	methionine adenosyltransferase II, beta	protein-coding	2.82297594846971	2.54992470532252	1.86700989012624	3.4975163435104	3.01504964471623	3.1968160869312	3.79098031616016	2.54452726541245	0.66844193329443	0.356218914802646	0.85378439273359
Merged-chr1-171221533-1	chr1	171221433	171221633	+	644.0	f1_balb.idr	promoter-TSS (NM_001305585)	promoter-TSS (NM_001305585)	-31.0	NM_001305585	11807.0	Mm.389209	NM_013474	ENSMUSG00000005681	Apoa2	Alp-2|Apo-AII|ApoA-II|ApoAII|Apoa-2|Hdl-1	apolipoprotein A-II	protein-coding	0.823677824509216	0.883117339124139	1.92580110782672	1.76585211603233	1.02827750157408	0.887294886913025	1.84258222528939	1.9625856815022	0.209527940343868	0.879659616427333	0.998431161219273
Merged-chr12-40257442-4	chr12	40257336	40257536	+	826.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34072.0	NR_045157	629820.0	Mm.435540	NR_045157	ENSMUSG00000035983	Gm7008	EG629820	predicted gene 7008	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94606810-2	chr10	94606710	94606910	+	780.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20611.0	NR_106070	102466817.0		NR_106070	ENSMUSG00000098544	Mir7211	Gm27536|mmu-mir-7211	microRNA 7211	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-18652766-2	chr15	18652666	18652866	+	602.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-166181.0	NM_001316758	320873.0	Mm.117794	NM_009865	ENSMUSG00000022321	Cdh10	A830016G23Rik|C030003B10Rik|C030011H18Rik	cadherin 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-84017610-4	chr6	84017540	84017740	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077694, intron 1 of 54)	intron (NM_001077694, intron 1 of 54)	-1746.0	NM_001310152	26903.0	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-44162597-3	chr1	44162499	44162699	+	929.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011729, intron 6 of 14)	intron (NM_011729, intron 6 of 14)	14855.0	NM_011729	22592.0	Mm.2213	NM_011729	ENSMUSG00000026048	Ercc5	Xpg	excision repair cross-complementing rodent repair deficiency, complementation group 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-19522378-3	chr10	19522277	19522477	+	964.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27734.0	NR_152785	102635880.0	Mm.331974	NR_152784	ENSMUSG00000110902	Gm33104	-	predicted gene, 33104	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-23523785-2	chr19	23523685	23523885	+	588.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-75463.0	NM_174857	71738.0	Mm.50841	NM_174857	ENSMUSG00000033207	Mamdc2	1200015L10Rik|AI591564|mamcan	MAM domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-152030309-2	chr4	152030209	152030409	+	709.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_031867, intron 5 of 5)	ORR1B1|LTR|ERVL-MaLR	-2638.0	NM_133879	100090.0	Mm.24661	NM_133879	ENSMUSG00000028952	Zbtb48	0610011D15Rik|AI327031|Hkr3|TZAP	zinc finger and BTB domain containing 48	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191447616-4	chr1	191447517	191447717	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151615, intron 2 of 5)	(CA)n|Simple_repeat|Simple_repeat	17431.0	NR_151615	102634668.0		NR_151615		Gm32200	-	predicted gene, 32200	ncRNA	3.06997335257952	2.78043390587009	2.06791934592563	2.3479043453865	3.33361611258093	2.52051166181199	2.70754012028948	3.43563767787826	0.804198035513249	0.264733293810996	0.767392863122061
Merged-chr4-101182802-4	chr4	101182685	101182885	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146145, intron 5 of 24)	(A)n|Simple_repeat|Simple_repeat	82497.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-56055275-4	chr4	56055175	56055375	+	954.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-522800.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-94212133-3	chr11	94211997	94212197	+	981.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009427, intron 1 of 1)	intron (NM_009427, intron 1 of 1)	643.0	NM_009427	22057.0	Mm.259673	NM_009427	ENSMUSG00000037573	Tob1	Tob|Trob	transducer of ErbB-2.1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135106849-4	chr5	135106750	135106950	+	963.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_152880)	promoter-TSS (NR_152880)	-41.0	NR_152881	58805.0	Mm.34213	NM_021455	ENSMUSG00000005373	Mlxipl	ChREBP|Mlx|WS-bHLH|Wbscr14|bHLHd14	MLX interacting protein-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72957927-1	chr6	72957827	72958027	+	753.0	f1_balb.idr	exon (NM_001039392, exon 1 of 2)	exon (NM_001039392, exon 1 of 2)	305.0	NM_001039392	19240.0	Mm.3532	NM_025284	ENSMUSG00000079523	Tmsb10	Ptmb10|Tb10	thymosin, beta 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-35727675-3	chr5	35727573	35727773	+	810.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359895, intron 1 of 17)	intron (NM_001359895, intron 1 of 17)	1603.0	NM_194344	231147.0	Mm.290429	NM_194344	ENSMUSG00000036553	Sh3tc1	4631428G15|BC024909	SH3 domain and tetratricopeptide repeats 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-146676036-2	chr5	146675936	146676136	+	705.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger7|DNA|TcMar-Tigger	-90797.0	NM_001359057	14738.0	Mm.153539	NM_008151	ENSMUSG00000041468	Gpr12	Gpcr01|Gpcr12|Gpcr20|Gpcr21	G-protein coupled receptor 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-38815727-3	chr9	38815594	38815794	+	583.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_146781, exon 1 of 1)	exon (NM_146781, exon 1 of 1)	286.0	NM_146781	258777.0	Mm.223208	NM_146781	ENSMUSG00000043911	Olfr922	MOR161-3	olfactory receptor 922	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-67116871-4	chr15	67116739	67116939	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009177, intron 3 of 8)	intron (NM_009177, intron 3 of 8)	60043.0	NM_009177	20442.0	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-102400877-2	chr11	102400777	102400977	+	630.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252347, intron 9 of 10)	intron (NM_001252347, intron 9 of 10)	4110.0	NR_105895	102465561.0		NR_105895	ENSMUSG00000098774	Mir6930	Gm27436|mmu-mir-6930	microRNA 6930	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-15984989-4	chr19	15984875	15985075	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045355)	promoter-TSS (NR_045355)	14.0	NM_198019	208518.0	Mm.105652	NM_198019	ENSMUSG00000041491	Cep78	5730599I05Rik|D030027P05	centrosomal protein 78	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-81016212-1	chr8	81016112	81016312	+	1000.0	f1_c57bl6.idr	Intergenic	MT2B|LTR|ERVL	-1306.0	NM_027554	74841.0	Mm.246018	NM_027554	ENSMUSG00000038250	Usp38	4631402N15Rik|4833420O05Rik|AA536967|AU044701|AW544820|mKIAA1891	ubiquitin specific peptidase 38	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-98317607-1	chr12	98317507	98317707	+	691.0	f0_balb.idr	Intergenic	Intergenic	48972.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-91852963-2	chr4	91852863	91853063	+	564.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	294258.0	NM_027034	69314.0	Mm.55891	NM_027034	ENSMUSG00000028533	Izumo3	1700011H22Rik	IZUMO family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70443894-2	chr11	70443794	70443994	+	601.125	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F2|SINE|Alu	5639.0	NR_106064	102465670.0		NR_106064	ENSMUSG00000099109	Mir7115	Gm27902|mmu-mir-7115	microRNA 7115	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-84622209-2	chr3	84622109	84622309	+	798.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28635.0	NM_207278	403175.0	Mm.83086	NM_207278	ENSMUSG00000047819	Tigd4	C130063O11Rik|Gm418	tigger transposable element derived 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-115815457-2	chr14	115815357	115815557	+	554.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175500, intron 7 of 7)	Lx3_Mus|LINE|L1	-405905.0	NR_045761	75088.0	Mm.444706	NR_045761	ENSMUSG00000093551	4930505G20Rik	-	RIKEN cDNA 4930505G20 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-125528129-4	chr8	125528023	125528223	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357372, intron 1 of 21)	intron (NM_001357372, intron 1 of 21)	-35290.0	NM_001081337	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	1.29267588836665	1.70116636754347	1.2583757515562	0.880588690868271	1.17801613698821	1.71519755387454	1.26762919275421	1.3685155823682	0.303801803812636	0.806676273250385	0.998431161219273
Merged-chr8-70789006-2	chr8	70788906	70789106	+	752.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_199308, exon 5 of 26)	exon (NM_199308, exon 5 of 26)	3427.0	NM_199308	546071.0	Mm.250731	NM_199308	ENSMUSG00000031833	Mast3	BC024265|mKIAA0561	microtubule associated serine/threonine kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-31126523-4	chr6	31126410	31126610	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110471, intron 3 of 3)	intron (NR_110471, intron 3 of 3)	-63417.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-15066563-4	chr14	15066491	15066691	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	245776.0	NM_001195229	674895.0	Mm.317563	NM_001034865	ENSMUSG00000042567	Nek10	Gm282	NIMA (never in mitosis gene a)- related kinase 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-8712130-4	chr19	8712025	8712225	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161413, intron 3 of 9)	intron (NM_001161413, intron 3 of 9)	1772.0	NM_008577	17254.0	Mm.4114	NM_008577	ENSMUSG00000010095	Slc3a2	4F2|4F2HC|AI314110|Cd98|Ly-10|Ly-m10|Ly10|Mdu1|Mgp-2hc|NACAE	solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-51588056-2	chr18	51587956	51588156	+	548.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2B2|LINE|L1	470158.0	NM_001081224	71373.0	Mm.63546	NM_001081224	ENSMUSG00000073565	Prr16	5430406M13Rik|AI607429	proline rich 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-55616808-3	chr16	55616724	55616924	+	627.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	122093.0	NR_039578	100628589.0		NR_039578	ENSMUSG00000093292	Mir5118	mmu-mir-5118|mu-mir-5118	microRNA 5118	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114910524-2	chr11	114910424	114910624	+	685.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	20483.0	NM_170758	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-99608918-2	chr12	99608818	99609018	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_136760, intron 2 of 3)	intron (NR_136760, intron 2 of 3)	19056.0	NR_045288	73457.0	Mm.383439	NR_045288	ENSMUSG00000100211	1700064M15Rik	-	RIKEN cDNA 1700064M15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-82688789-3	chr7	82688642	82688842	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175317, intron 12 of 19)	RMER17C|LTR|ERVK	40128.0	NM_175317	101592.0	Mm.238020	NM_175317	ENSMUSG00000038563	Efl1	4932434J20Rik|6030468D11Rik|AI451340|AU019507|AU022896|D7Ertd791e|Eftud1	elongation factor like GPTase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-57594418-4	chr8	57594300	57594500	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167981, intron 1 of 11)	intron (NM_001167981, intron 1 of 11)	-57353.0	NR_040698	100502619.0	Mm.393851	NR_040698		AW046200	-	expressed sequence AW046200	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-115250564-4	chr10	115250461	115250661	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025706, intron 1 of 16)	intron (NM_025706, intron 1 of 16)	932.0	NM_025706	66687.0	Mm.22252	NM_025706	ENSMUSG00000020130	Tbc1d15	4432405K22Rik|AU022358|AU023730|AW557774|Ly6dl|Rab7-GAP	TBC1 domain family, member 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-20157778-4	chr13	20157664	20157864	+	870.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	67257.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133370267-4	chr4	133370135	133370335	+	859.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_039582)	TTS (NR_039582)	459.0	NR_039582	100628620.0		NR_039582	ENSMUSG00000092745	Mir5122	mmu-mir-5122|mu-mir-5122	microRNA 5122	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84742949-2	chr8	84742849	84743049	+	697.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081982, intron 2 of 9)	intron (NM_001081982, intron 2 of 9)	31420.0	NM_001081981	18032.0	Mm.9394	NM_010906	ENSMUSG00000001911	Nfix	CTF|NF-I/X|NF1-X|NFI-X	nuclear factor I/X	protein-coding	-1.50811478453619	-0.99851579554048	-1.48484165847197	-1.49312904261012	-1.50577282675516	-1.47256636097272	-1.48255773576353	-1.49164560481169	-2.24133836997777	0.518237887813808	1
Merged-chr10-81431916-4	chr10	81431818	81432018	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4745.0	NM_026756	18029.0	Mm.426936	NM_008688	ENSMUSG00000055053	Nfic	1110019L22Rik|1500041O16Rik|AA589446|AI746521|NF1-C	nuclear factor I/C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120349626-3	chr11	120349515	120349715	+	852.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038126, intron 1 of 1)	CpG	937.0	NR_038126	66838.0	Mm.375010	NR_038126	ENSMUSG00000043644	0610009L18Rik	-	RIKEN cDNA 0610009L18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-120074841-7	chr1	120074805	120075005	+	916.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1125.0	NM_019432	170706.0	Mm.24750	NM_019432	ENSMUSG00000050777	Tmem37	AI173373|AW540203|Pr|Pr1	transmembrane protein 37	protein-coding	2.39279349543664	2.24630809409859	2.91412354350619	3.44075648073426	2.86883655648001	1.54552753505588	3.02561090199317	2.4148394710421	-0.48740554137607	0.550807904619365	0.958992750730181
Merged-chr10-128015206-2	chr10	128015106	128015306	+	882.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008921)	promoter-TSS (NM_008921)	-9.0	NM_008921	19075.0	Mm.2903	NM_008921	ENSMUSG00000025395	Prim1	AI324982	DNA primase, p49 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-86451806-4	chr9	86451724	86451924	+	708.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027394, exon 2 of 10)	exon (NM_027394, exon 2 of 10)	13092.0	NM_027394	70348.0	Mm.53469	NM_027394	ENSMUSG00000032415	Ube2cbp	2610018I03Rik|Ube3d	ubiquitin-conjugating enzyme E2C binding protein	protein-coding	0.689907567576122	0.441449446381639	1.20401854324463	0.595136173008405	0.809289044577706	0.443170820084368	0.904564315490839	0.598361870274078	-0.393335905736742	0.808109417779415	1
Merged-chr10-10412392-2	chr10	10412292	10412492	+	728.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001127353, intron 11 of 36)	intron (NM_001127353, intron 11 of 36)	59922.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118233695-2	chr11	118233595	118233795	+	821.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	14897.0	NM_001112699	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-34511280-4	chr19	34511201	34511401	+	965.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111100, intron 3 of 9)	intron (NM_001111100, intron 3 of 9)	16173.0	NM_001111100	16889.0	Mm.157545	NM_021460	ENSMUSG00000024781	Lipa	AA960673|Lal|Lip-1|Lip1	lysosomal acid lipase A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-10948308-2	chr16	10948208	10948408	+	570.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-33511.0	NR_131135	545180.0	Mm.373756	NR_131135	ENSMUSG00000095369	Gm21859	-	predicted gene, 21859	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-29524306-4	chr6	29524208	29524408	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2317.0	NM_001311083	27056.0	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-76070549-4	chr2	76070438	76070638	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081033, intron 12 of 19)	intron (NM_001081033, intron 12 of 19)	-88571.0	NM_030188	78802.0	Mm.282339	NM_030188	ENSMUSG00000075271	Ttc30a1	4930506L13Rik	tetratricopeptide repeat domain 30A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-127979122-3	chr1	127979064	127979264	+	642.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285945, intron 12 of 20)	(TG)n|Simple_repeat|Simple_repeat	110391.0	NM_178690	226407.0	Mm.489713	NM_178690	ENSMUSG00000036104	Rab3gap1	1700003B17Rik|4732493F09Rik|AL117896|Rab3gap|p130	RAB3 GTPase activating protein subunit 1	protein-coding	2.92142349864312	1.4107038497766	2.34944991529752	2.61310242846487	3.21771861921856	2.45352050676525	2.60927402911497	1.34271014664476	0.27318549825283	0.774864575832547	0.998431161219273
Merged-chr2-83689596-2	chr2	83689496	83689696	+	680.0	f0_balb.idr|f0_c57.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-34801.0	NM_008402	16410.0	Mm.227	NM_008402	ENSMUSG00000027087	Itgav	1110004F14Rik|2610028E01Rik|CD51|D430040G12Rik	integrin alpha V	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-128481016-2	chr6	128480916	128481116	+	812.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_028593, intron 2 of 4)	intron (NR_028593, intron 2 of 4)	42259.0	NR_028593	791299.0	Mm.297516	NR_028592	ENSMUSG00000059659	Gm10069	-	predicted gene 10069	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-79319809-2	chr15	79319709	79319909	+	560.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_016915, intron 1 of 15)	MER44B|DNA|TcMar-Tigger	8562.0	NM_016915	53357.0	Mm.155620	NM_016915	ENSMUSG00000042632	Pla2g6	BB112799|PNPLA9|iPLA(2)beta|iPLA2|iPLA2beta	phospholipase A2, group VI	protein-coding	-1.06997269762433	-1.30473905204845	-1.3145270772132	-1.32256725251374	-1.06385251204029	-1.30261794616352	-1.3123112828633	-1.32112806497905	0.0394047164033882	0.991001358494878	1
Merged-chr19-43667795-2	chr19	43667743	43667943	+	727.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145156, intron 1 of 3)	B3A|SINE|B2	7038.0	NM_145156	246696.0	Mm.23827	NM_145156	ENSMUSG00000040414	Slc25a28	Mfrn2|Mrs3/4	solute carrier family 25, member 28	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99149250-4	chr7	99149132	99149332	+	957.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8088.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-100505527-2	chr9	100505427	100505627	+	891.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010878, intron 2 of 3)	intron (NM_010878, intron 2 of 3)	1329.0	NM_001324530	17973.0	Mm.181485	NM_010878	ENSMUSG00000032475	Nck1	6330586M15Rik|D230010O13Rik|Nck|Nck-1	non-catalytic region of tyrosine kinase adaptor protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-89094014-2	chr11	89093914	89094114	+	593.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001033266)	TTS (NM_001033266)	20173.0	NM_001033266	217071.0	Mm.342127	NM_001033266	ENSMUSG00000072553	Gm525	-	predicted gene 525	protein-coding	-0.57479855922428	-0.563372418157084	-0.107698983996129	0.0642706756554908	-0.574085977446824	-0.562527757223577	-0.566292238472281	-0.569502128689904	-3.41067394674139	0.216945843777474	1
Merged-chr9-44124521-2	chr9	44124421	44124621	+	769.75	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_152189, exon 2 of 2)	non-coding (NR_152189, exon 2 of 2)	9964.0	NR_152189	100038560.0	Mm.429758	NR_152189		Gm10687	-	predicted gene 10687	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19697594-2	chr7	19697474	19697674	+	639.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_009696, exon 3 of 4)	exon (NM_009696, exon 3 of 4)	824.0	NM_001305819	11816.0	Mm.305152	NM_009696	ENSMUSG00000002985	Apoe	AI255918|Apo-E	apolipoprotein E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-103790966-3	chr3	103790834	103791034	+	998.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301304, intron 1 of 15)	CpG	341.0	NM_001301306	15257.0	Mm.20827	NM_010432	ENSMUSG00000008730	Hipk1	1110062K04Rik|Myak	homeodomain interacting protein kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-104961907-6	chr3	104962077	104962277	+	878.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009520)	promoter-TSS (NM_009520)	-468.0	NM_009520	22414.0	Mm.10740	NM_009520	ENSMUSG00000027840	Wnt2b	Wnt13	wingless-type MMTV integration site family, member 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-56946822-4	chr4	56946717	56946917	+	998.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175518, intron 1 of 17)	CpG	612.0	NM_175518	242474.0	Mm.296632	NM_175518	ENSMUSG00000055296	Tmem245	A630051L19Rik|AI957324|D730040F13Rik	transmembrane protein 245	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-149961071-6	chr1	149960973	149961173	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008869, intron 1 of 17)	intron (NM_008869, intron 1 of 17)	217.0	NM_008869	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-131950845-2	chr2	131950745	131950945	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001278520)	promoter-TSS (NM_001278520)	-16.0	NM_001278257	26434.0	Mm.180750	NM_023043	ENSMUSG00000027338	Prnd	AI450264|Dpl|PrPLP|doppel	prion like protein doppel	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-13538774-1	chr9	13538674	13538874	+	602.0	f1_c57bl6.idr	Intergenic	Intergenic	-81215.0	NM_001013813	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	-0.070260664618605	-0.0528725905248555	0.632262232045289	-0.0629446789937998	0.214062125712723	0.590986335105401	-0.0572977344413839	-0.0621764987789357	0.306408221718616	0.892446983066114	1
Merged-chr2-6165988-4	chr2	6165908	6166108	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27243.0	NR_040333	320132.0	Mm.445891	NR_040333	ENSMUSG00000087125	A230108P19Rik	-	RIKEN cDNA A230108P19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-111329989-2	chr5	111329889	111330089	+	735.833374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001301666)	promoter-TSS (NM_001301666)	-708.0	NM_001301644	56305.0	Mm.200516	NM_019640	ENSMUSG00000050017	Pitpnb	PI-TP-beta	phosphatidylinositol transfer protein, beta	protein-coding	1.91549994378425	0.840040046766229	1.48841203677725	1.44131356140265	1.37233587878071	0.843265024765254	0.828784253612701	1.44963622677937	-1.20161991548921	0.389822250119138	0.878821374845813
Merged-chr7-43423228-4	chr7	43423129	43423329	+	998.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6872.0	NM_177693	233187.0	Mm.267027	NM_177693	ENSMUSG00000093639	Lim2	19kDa|4833403J20|MP19|To3	lens intrinsic membrane protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-99177254-3	chr11	99177124	99177324	+	871.2666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22147.0	NM_007719	12775.0	Mm.2932	NM_007719	ENSMUSG00000037944	Ccr7	CC-CKR-7|CCR-7|CD197|Cdw197|Cmkbr7|EBI1|Ebi1h	chemokine (C-C motif) receptor 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-81072468-4	chr13	81072375	81072575	+	947.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015587, intron 1 of 1)	ERVB5_1-I_MM-int|LTR|ERVK	108401.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-89703235-4	chr10	89703144	89703344	+	871.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16881.0	NR_130956	69002.0	Mm.293947	NR_130956	ENSMUSG00000097383	1500026H17Rik	-	RIKEN cDNA 1500026H17 gene	ncRNA	1.84262292856702	1.87648312335701	2.84015561063872	1.57557424671627	2.41038571253192	2.22987405096628	2.51514433846179	2.53230615123059	0.647455288644063	0.465563535489426	0.922736970596151
Merged-chr12-84589911-4	chr12	84589821	84590021	+	808.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301427, intron 3 of 4)	CpG	20093.0	NM_001301427	12677.0	Mm.4405	NM_007701	ENSMUSG00000021239	Vsx2	Chx10|Hox-10|Hox10|or	visual system homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-144930494-3	chr4	144930379	144930579	+	860.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37342.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-85654038-4	chr15	85653992	85654192	+	999.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49681.0	NR_110483	102800312.0	Mm.33117	NR_110483		Lncppara	Lincppara|Mirlet7bhg|linc-Ppara	long noncoding RNA near Ppara	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-48545816-2	chr9	48545716	48545916	+	560.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	50473.0	NM_001004191	434402.0	Mm.386950	NM_001004191	ENSMUSG00000042293	Gm5617	EG434402	predicted gene 5617	protein-coding	-0.700064241511417	-0.186671140929496	-0.692852367725508	-0.695563882069579	-0.699394869705802	-0.177296101845517	-0.692077155152847	-0.695090216270211	0.0394491945098347	0.989215944639676	1
Merged-chr2-90476183-2	chr2	90476083	90476283	+	741.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	2991.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-153747714-2	chr1	153747614	153747814	+	719.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-1712.0	NM_011882	24014.0	Mm.259254	NM_011882	ENSMUSG00000066800	Rnasel	E230029I04Rik	ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-54376108-4	chr14	54376000	54376200	+	964.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011405, intron 6 of 11)	intron (NM_011405, intron 6 of 11)	15259.0	NM_026936	69089.0	Mm.182340	NM_026936	ENSMUSG00000000959	Oxa1l	1810020M02Rik|AI894287	oxidase assembly 1-like	protein-coding	3.40941262467665	3.44198425030483	2.17340084949541	2.9622989882273	3.31191481884248	3.83057565411051	2.38871918424605	3.33092972848926	0.361278966492306	0.588895235057583	0.968770342352041
Merged-chr13-67637376-4	chr13	67637279	67637479	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183146, intron 1 of 3)	intron (NM_183146, intron 1 of 3)	374.0	NM_183146	212281.0	Mm.342918	NM_183146	ENSMUSG00000021510	Zfp729a	A530054K11Rik|Rslcan3	zinc finger protein 729a	protein-coding	4.19485513016457	3.72442823276677	3.60276767731646	3.27575329137967	3.41938950515918	2.04212583795125	2.58214370740969	2.77963972842667	-1.48169457515306	0.018691908921908	0.171456822052792
Merged-chr8-106133376-2	chr8	106133276	106133476	+	975.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_176838, intron 9 of 14)	intron (NM_176838, intron 9 of 14)	-2024.0	NR_040345	69771.0	Mm.393274	NR_040344		1810019D21Rik	-	RIKEN cDNA 1810019D21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-129779219-4	chr5	129779088	129779288	+	980.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_133900, exon 3 of 8)	5' UTR (NM_133900, exon 3 of 8)	8065.0	NM_133900	100678.0	Mm.271784	NM_133900	ENSMUSG00000029446	Psph	AI480570|PSP|PSPase	phosphoserine phosphatase	protein-coding	4.19285538534701	2.5677210006962	3.95384694183784	3.59650492856439	3.89528928149743	2.76953701869464	3.79562057911839	2.86487086527865	-0.408975404409464	0.503185764494462	0.939787919021146
Merged-chr11-77386538-4	chr11	77386427	77386627	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291190, intron 1 of 13)	intron (NM_001291190, intron 1 of 13)	38247.0	NM_001291190	237860.0	Mm.440381	NM_177710	ENSMUSG00000037926	Ssh2	SSH-2|SSH-2L|mSSH-2L	slingshot protein phosphatase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166492573-2	chr2	166492473	166492673	+	575.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45122.0	NR_015558	319684.0	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-112353647-2	chr13	112353547	112353747	+	975.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001168403, intron 7 of 11)	intron (NM_001168403, intron 7 of 11)	65129.0	NM_001168404	77318.0	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	2.09149860134747	1.48003336457206	2.54116739220611	3.26651394007529	2.56044094200986	2.00862350387472	2.87510837250249	3.09582325845156	0.338603386527718	0.69472080483096	0.997836418558882
Merged-chr19-36975272-2	chr19	36975172	36975372	+	573.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080706, intron 14 of 37)	B2_Mm1t|SINE|B2	49193.0	NM_001080706	107182.0	Mm.295062	NM_001080706	ENSMUSG00000040565	Btaf1	AI414500|AI447930|E430027O22Rik|TAF170	B-TFIID TATA-box binding protein associated factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-43816934-2	chr1	43816834	43817034	+	598.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_026430, intron 1 of 14)	intron (NM_026430, intron 1 of 14)	10774.0	NM_026430	67883.0	Mm.387202	NM_026430	ENSMUSG00000057363	Uxs1	1600025I13Rik|AI451869|AI649125|AW550562	UDP-glucuronate decarboxylase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-41580032-3	chr10	41579950	41580150	+	924.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358562, intron 35 of 47)	intron (NM_001358562, intron 35 of 47)	12034.0	NR_045341	70538.0	Mm.399807	NR_045341	ENSMUSG00000091370	5730435O14Rik	-	RIKEN cDNA 5730435O14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107888569-2	chr9	107888469	107888669	+	681.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028369, intron 1 of 5)	intron (NM_028369, intron 1 of 5)	440.0	NM_028369	72825.0	Mm.38037	NM_028369	ENSMUSG00000032583	Mon1a	2810468K17Rik	MON1 homolog A, secretory traffciking associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-6412217-2	chr15	6412117	6412317	+	773.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037905, intron 1 of 13)	B1F|SINE|Alu	25469.0	NM_001310446	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-95853657-1	chr7	95853557	95853757	+	797.5	f0_balb.idr	Intergenic	Tigger7|DNA|TcMar-Tigger	-317587.0	NM_001310762	23966.0	Mm.254610	NM_011858	ENSMUSG00000048078	Tenm4	Doc4|ELM2|Odz4|R75022|Ten-m4|l(7)-3Rn|l7Rn3|mKIAA1302	teneurin transmembrane protein 4	protein-coding	1.59357893226143	1.23793372692212	0.69034503488131	0.681747957472516	1.0953767550653	0.703864627132995	1.20022160250447	1.27562979754197	-0.16301265653465	0.914497663790654	0.998431161219273
Merged-chr19-10831928-8	chr19	10831828	10832028	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-1870.0	NM_009852	12511.0	Mm.290897	NM_009852	ENSMUSG00000024670	Cd6	-	CD6 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-41275466-4	chr4	41275358	41275558	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026872)	promoter-TSS (NM_026872)	-323.0	NM_026872	68926.0	Mm.41864	NM_026872	ENSMUSG00000028433	Ubap2	1190005K07Rik|AA408600|AU045235|UBAP-2|mKIAA1491	ubiquitin-associated protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-57333751-2	chr17	57333651	57333851	+	745.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24935.0	NM_001355723	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-86529779-2	chr1	86529679	86529879	+	794.099976	f1_balb.idr|f1_c57bl6.idr	exon (NM_001360830, exon 4 of 5)	exon (NM_001360830, exon 4 of 5)	3222.0	NM_001360830	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-35046099-2	chr9	35045999	35046199	+	876.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_009178)	TTS (NM_009178)	-70629.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65493084-4	chr9	65493006	65493206	+	966.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30405.0	NM_001357813	27965.0	Mm.272475	NM_138584	ENSMUSG00000032388	Spg21	ACP33|BM-019|C78576|D9Wsu18e|GL010|MAST	SPG21, maspardin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-152763565-4	chr2	152763542	152763742	+	845.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053091, intron 4 of 4)	B1_Mm|SINE|Alu	9469.0	NM_053091	84682.0	Mm.196668	NM_053091	ENSMUSG00000009876	Cox4i2	Cox4b|CoxIV-2	cytochrome c oxidase subunit 4I2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-28576955-2	chr6	28576855	28577055	+	559.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019776, intron 10 of 23)	intron (NM_019776, intron 10 of 23)	96607.0	NM_019776	56463.0	Mm.439987	NM_019776	ENSMUSG00000001424	Snd1	AL033314|Tudor-SN	staphylococcal nuclease and tudor domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32450000-4	chr2	32449903	32450103	+	977.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_194335)	promoter-TSS (NM_194335)	-454.0	NM_194335	71254.0	Mm.102341	NM_194335	ENSMUSG00000039164	Naif1	2310007O20Rik|4933440H19Rik	nuclear apoptosis inducing factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-113399115-3	chr2	113399022	113399222	+	846.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285458, intron 2 of 16)	intron (NM_001285458, intron 2 of 16)	-41942.0	NM_001285459	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-121830883-1	chr9	121830783	121830983	+	786.0	f1_balb.idr	exon (NM_028384, exon 3 of 16)	exon (NM_028384, exon 3 of 16)	8578.0	NM_028384	100502861.0	Mm.335550	NM_028384	ENSMUSG00000079235	Ccdc13	2900041A11Rik|Gm188	coiled-coil domain containing 13	protein-coding	-0.453327740342813	-0.117880587102224	-0.446736982476407	-0.44922614171854	-0.20551908746008	-0.262237061132571	-0.14151072349836	-0.448792288622816	1.24063729131373	0.615542398107729	1
Merged-chr6-72989251-2	chr6	72989233	72989433	+	856.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30585.0	NM_001190327	19240.0	Mm.3532	NM_025284	ENSMUSG00000079523	Tmsb10	Ptmb10|Tb10	thymosin, beta 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-95924923-4	chr4	95924814	95925014	+	915.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113412, intron 15 of 15)	L1_Mus1|LINE|L1	42121.0	NR_045777	319247.0	Mm.473527	NM_175680	ENSMUSG00000044125	9530080O11Rik	-	RIKEN cDNA 9530080O11 gene	ncRNA	2.83146919908553	2.48924571953504	1.93889481803156	2.33928209500484	2.98115011163059	2.74731636193204	1.7404485176084	2.67328506897534	0.364636093620715	0.655708320130728	0.988505467120973
Merged-chr6-97820824-4	chr6	97820738	97820938	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113198, intron 1 of 9)	intron (NM_001113198, intron 1 of 9)	13780.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	3.74631235982871	4.1823520952648	3.91977615925732	3.87864787990886	4.34425239066568	3.46571248553263	4.35631646985085	3.52688049850299	0.08915450518471	0.850779343576184	0.998431161219273
Merged-chr17-10725073-4	chr17	10724973	10725173	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027032, intron 2 of 4)	intron (NM_027032, intron 2 of 4)	115118.0	NM_027032	69310.0	Mm.18889	NM_027032	ENSMUSG00000037196	Pacrg	1700008H23Rik	PARK2 co-regulated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-34204489-4	chr13	34204377	34204577	+	840.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033167, intron 4 of 10)	MIR|SINE|MIR	41513.0	NM_001110515	69666.0	Mm.24788	NM_001101430	ENSMUSG00000071451	Psmg4	PAC-4|mPAC4	proteasome (prosome, macropain) assembly chaperone 4	protein-coding	1.78480510236895	1.88460899035227	1.67803599496686	2.17810274769945	1.04822855991551	2.34805565956541	1.33325305420683	1.483114987133	-0.657398831986169	0.554188203294375	0.959914380895535
Merged-chr13-22044356-4	chr13	22044265	22044465	+	962.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_178198)	TTS (NM_178198)	1135.0	NM_178198	319183.0	Mm.371766	NM_178198	ENSMUSG00000069300	Hist1h2bj	-	histone cluster 1, H2bj	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-94733912-2	chr7	94733812	94734012	+	562.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1437332.0	NM_001310762	23966.0	Mm.254610	NM_011858	ENSMUSG00000048078	Tenm4	Doc4|ELM2|Odz4|R75022|Ten-m4|l(7)-3Rn|l7Rn3|mKIAA1302	teneurin transmembrane protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-12845413-2	chr5	12845313	12845513	+	585.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	462247.0	NM_028882	108151.0	Mm.89313	NM_028882	ENSMUSG00000040254	Sema3d	4631426B19Rik	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96487412-2	chr3	96487312	96487512	+	628.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35106.0	NM_001256181	329716.0	Mm.275223	NM_183223	ENSMUSG00000046317	BC107364	D730018G16	cDNA sequence BC107364	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-110071246-4	chr9	110071144	110071344	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205330, intron 14 of 18)	intron (NM_001205330, intron 14 of 18)	19223.0	NM_001311164	17758.0	Mm.217318	NM_008633	ENSMUSG00000032479	Map4	AA407148|MAP-4|Mtap-4|Mtap4	microtubule-associated protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55825548-2	chr14	55825448	55825648	+	672.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001168346, intron 1 of 8)	CpG	753.0	NM_023699	73181.0	Mm.27908	NM_023699	ENSMUSG00000023411	Nfatc4	3110041H08Rik|AW107667|AW546455|Nfat3	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6340123-4	chr19	6340025	6340225	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001168488, exon 10 of 10)	exon (NM_001168488, exon 10 of 10)	-1035.0	NM_009006	26412.0	Mm.25860	NM_009006	ENSMUSG00000024948	Map4k2	AI385662|BL44|GCK|Rab8ip	mitogen-activated protein kinase kinase kinase kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101973887-4	chr15	101973791	101973991	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19604.0	NM_212487	332131.0	Mm.325105	NM_212487	ENSMUSG00000050463	Krt78	2310030B04Rik|Kb40	keratin 78	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-130219642-4	chr5	130219541	130219741	+	896.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081394)	promoter-TSS (NM_001081394)	-103.0	NM_001081394	71667.0	Mm.258508	NM_027854	ENSMUSG00000053094	Tmem248	0610007L01Rik|A930023A16Rik|AW557951|G430067H08Rik	transmembrane protein 248	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-59704680-3	chr13	59704595	59704795	+	850.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028157, intron 2 of 3)	intron (NM_028157, intron 2 of 3)	1502.0	NM_028157	72219.0	Mm.233883	NM_028157	ENSMUSG00000050876	Spata31d1a	1700013B16Rik|Fam75d1a|Fam75d3	spermatogenesis associated 31 subfamily D, member 1A	protein-coding	-1.43172712806865	-1.3992492906874	-1.40907085678131	-1.41713858359971	-0.932192548427885	-1.39712091634321	-1.40684746950024	-1.41569446435649	2.19283191591698	0.528233640655333	1
Merged-chr3-39713307-2	chr3	39713207	39713407	+	847.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	809605.0	NR_040445	100040882.0	Mm.272869	NR_040445	ENSMUSG00000037884	1700017G19Rik	-	RIKEN cDNA 1700017G19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-43355446-2	chr7	43355346	43355546	+	615.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001271019, exon 7 of 9)	exon (NM_001271019, exon 7 of 9)	4105.0	NM_145581	233186.0	Mm.290569	NM_145581	ENSMUSG00000039013	Siglecf	Siglec5|mSiglec-F	sialic acid binding Ig-like lectin F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27552824-2	chr17	27552724	27552924	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3750.0	NM_001166536	15361.0	Mm.4438	NM_016660	ENSMUSG00000046711	Hmga1	AL023995|Hmga1a|Hmga1b|Hmgi|Hmgiy|Hmgy	high mobility group AT-hook 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-121301151-3	chr9	121301059	121301259	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152160, intron 1 of 17)	ORR1D2|LTR|ERVL-MaLR	3657.0	NR_152160	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	0.908276125315901	0.351695260068572	-0.0265186834733139	0.142865107570622	-0.0377757040371933	-0.0191577682675067	0.165586942081881	-0.0303583244985907	-3.2076511108481	0.127764111972054	1
Merged-chr4-118107460-3	chr4	118107393	118107593	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285520, intron 2 of 11)	intron (NM_001285520, intron 2 of 11)	27453.0	NM_001285520	20441.0	Mm.251002	NM_009176	ENSMUSG00000028538	St3gal3	ST3GalIII|ST3N|Siat3|Siat6	ST3 beta-galactoside alpha-2,3-sialyltransferase 3	protein-coding	3.73130348624601	3.23533602172541	2.98964334457346	2.42656307093367	4.82143508595772	4.13666803215706	3.9411074879628	4.05924689016018	1.58283080114045	0.00309560592620517	0.0463876934670395
Merged-chr2-73427658-5	chr2	73427616	73427816	+	835.773315	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26173.0	NM_001289722	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-151096168-4	chr1	151095976	151096176	+	840.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41958.0	NR_038011	402734.0	Mm.337666	NR_038011		C730036E19Rik	lncLSTR	RIKEN cDNA C730036E19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-119912425-4	chr4	119912310	119912510	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010657, intron 1 of 8)	intron (NM_010657, intron 1 of 8)	97732.0	NM_010657	16656.0	Mm.302758	NM_010657	ENSMUSG00000028634	Hivep3	2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3	human immunodeficiency virus type I enhancer binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-66080373-4	chr7	66080299	66080499	+	766.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_024439, exon 2 of 6)	exon (NM_024439, exon 2 of 6)	750.0	NM_024439	109815.0	Mm.482127	NM_024439	ENSMUSG00000075701	Selenos	1500011E07Rik|C78786|H-4|H-47|H4|H47|Sels|Vimp	selenoprotein S	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89159540-2	chr3	89159440	89159640	+	815.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_008227, intron 1 of 7)	intron (NM_008227, intron 1 of 7)	617.0	NM_008227	15168.0	Mm.389461	NM_008227	ENSMUSG00000028051	Hcn3	BCNG-4|Bcng4|Hac3|Hcn4	hyperpolarization-activated, cyclic nucleotide-gated K+ 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-3343548-2	chr18	3343448	3343648	+	543.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_033457, intron 1 of 1)	L1_Mur2|LINE|L1	-5959.0	NM_001110852	12916.0	Mm.5244	NM_013498	ENSMUSG00000063889	Crem	ICER|ICERI	cAMP responsive element modulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-37858735-2	chr13	37858635	37858835	+	693.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039188, intron 1 of 9)	intron (NM_001039188, intron 1 of 9)	-29699.0	NR_033218	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-38297584-6	chr15	38297553	38297753	+	803.805542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001289471, exon 2 of 5)	exon (NM_001289471, exon 2 of 5)	2247.0	NM_001357677	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-25507044-2	chr9	25506944	25507144	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 2 of 7)	intron (NM_026189, intron 2 of 7)	25447.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-40320146-3	chr9	40320068	40320268	+	826.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151734, intron 3 of 18)	intron (NR_151734, intron 3 of 18)	1155.0	NM_001357622	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-74828128-2	chr11	74828028	74828228	+	968.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2796.0	NM_010813	17428.0	Mm.3759	NM_010813	ENSMUSG00000000282	Mnt	Rox|bHLHd3	max binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-157688685-4	chr2	157688541	157688741	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER20C_Mm|LTR|ERVK	-48760.0	NM_025680	66642.0	Mm.45193	NM_025680	ENSMUSG00000027649	Ctnnbl1	5730471K09Rik|NAP|NYD-SP19|P14L	catenin, beta like 1	protein-coding	-0.391160453472205	-0.376941720461776	0.212141450671306	-0.385179904078712	-0.390269469194869	-0.37589618351836	0.329623885107887	-0.384551758053355	0.365242253643023	0.890834456314612	1
Merged-chr8-84465751-1	chr8	84465651	84465851	+	932.0	f0_balb.idr	intron (NM_001252060, intron 3 of 47)	RLTR12B|LTR|ERVK	50387.0	NM_001252061	12286.0	Mm.334658	NM_007578	ENSMUSG00000034656	Cacna1a	APCA|BI|Caca1a|Cacnl1a4|Cav2.1|Ccha1a|EA2|FHM|HPCA|MHP|MHP1|SCA6|alpha1A|la|nmf352|rkr|smrl|tg	calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167491174-2	chr2	167491074	167491274	+	819.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356523, intron 1 of 3)	intron (NM_001356523, intron 1 of 3)	-1471.0	NM_030743	81018.0	Mm.22225	NM_030743	ENSMUSG00000006418	Rnf114	1110008J21Rik|AI225886|AW549494|Zfp228|Zfp313|Znf228	ring finger protein 114	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-114907532-2	chr4	114907432	114907632	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008593, exon 1 of 1)	exon (NM_008593, exon 1 of 1)	1366.0	NM_008593	17301.0	Mm.7997	NM_008593	ENSMUSG00000055210	Foxd2	AI426778|Mf2	forkhead box D2	protein-coding	-0.261967109640885	0.323385002243265	-0.248495453296784	-0.253521942103866	-0.26070264759906	-0.24060134208408	0.810307722051616	-0.252640605039765	1.31963153719084	0.592488615159645	1
Merged-chr9-58278366-2	chr9	58278266	58278466	+	622.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	25202.0	NM_026942	69106.0	Mm.216502	NM_026942	ENSMUSG00000032333	Stoml1	1810015E19Rik|AI847431|SLP1|STORP|UNC24|WPB72	stomatin-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-84946619-2	chr3	84946519	84946719	+	672.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177774, intron 3 of 12)	intron (NM_001177774, intron 3 of 12)	-5592.0	NM_080428	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	-1.43172712806865	-1.3992492906874	-1.40907085678131	-1.41713858359971	-0.932192548427885	-1.39712091634321	-1.40684746950024	-1.41569446435649	2.19283191591698	0.528233640655333	1
Merged-chr7-116410070-2	chr7	116409970	116410170	+	787.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011083, intron 2 of 32)	intron (NM_011083, intron 2 of 32)	33388.0	NM_011083	18704.0	Mm.3810	NM_011083	ENSMUSG00000030660	Pik3c2a	Cpk-m|PI3KC2	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101884334-4	chr7	101884235	101884435	+	904.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291353, intron 1 of 5)	ORR1E|LTR|ERVL-MaLR	-1525.0	NM_001291352	75430.0	Mm.284491	NM_027532	ENSMUSG00000030649	Anapc15	3200002M19Rik|6330414C15Rik|APC15	anaphase prompoting complex C subunit 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-21284941-1	chr19	21284841	21285041	+	549.0	f1_c57bl6.idr	3' UTR (NM_009551, exon 6 of 6)	3' UTR (NM_009551, exon 6 of 6)	12663.0	NM_009551	22682.0	Mm.292405	NM_009551	ENSMUSG00000024750	Zfand5	2310057A04Rik|5830475F03Rik|AA415485|Za20d2|Zfp216	zinc finger, AN1-type domain 5	protein-coding	0.624318342919249	0.685684836787772	1.44259026214301	1.2477568157897	0.628368902250587	1.18277281628756	2.41028571957211	1.09049089789152	1.5454487441779	0.280499903265244	0.783412873231201
Merged-chr11-82952800-4	chr11	82952698	82952898	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183201, intron 1 of 5)	intron (NM_183201, intron 1 of 5)	696.0	NM_183201	327978.0	Mm.42147	NM_183201	ENSMUSG00000054404	Slfn5	AI956840	schlafen 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-34234109-4	chr19	34234003	34234203	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001360716, exon 6 of 11)	exon (NM_001360716, exon 6 of 11)	1478.0	NM_001360720	76630.0	Mm.130952	NM_029682	ENSMUSG00000024776	Stambpl1	1700095N21Rik|8230401J17Rik|ALMalpha|AMSH-FP	STAM binding protein like 1	protein-coding	3.84960908689298	3.81188528715849	4.03632121721471	3.92919885182332	3.9329476263339	3.56660484571846	4.28723572209386	3.67974064529222	-0.0137381652982544	0.976201944476469	0.998431161219273
Merged-chr5-99243507-3	chr5	99243342	99243542	+	915.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181318, intron 1 of 13)	intron (NM_181318, intron 1 of 13)	9485.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-58871598-2	chr15	58871498	58871698	+	791.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1051.0	NM_026642	68260.0	Mm.278805	NM_026642	ENSMUSG00000037085	Trmt12	4632406N01Rik|AI449275|Tyw2	tRNA methyltranferase 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127532787-2	chr10	127532687	127532887	+	860.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_183297, intron 1 of 1)	intron (NM_183297, intron 1 of 1)	1772.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-57559540-3	chr16	57559472	57559672	+	685.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177871, intron 1 of 1)	MIRb|SINE|MIR	10330.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-82763436-2	chr11	82763336	82763536	+	558.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025884)	promoter-TSS (NM_025884)	885.0	NM_009839	12467.0	Mm.4126	NM_009839	ENSMUSG00000020698	Cct6b	CCT-zeta-2|CCTzeta-2|Cctz-2|TCP-1-zeta-2	chaperonin containing Tcp1, subunit 6b (zeta)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-90702430-2	chr6	90702330	90702530	+	634.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356440, intron 1 of 13)	intron (NM_001356440, intron 1 of 13)	14099.0	NM_001134383	232227.0	Mm.196943	NM_182784	ENSMUSG00000034312	Iqsec1	AW561907|BC026481|BRAG2|D6Ertd349e|cI-43	IQ motif and Sec7 domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-4592548-2	chr12	4592448	4592648	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001198968)	promoter-TSS (NM_001198968)	-460.0	NM_001198969	20403.0	Mm.341204	NM_011365	ENSMUSG00000020640	Itsn2	AI327390|Ese2|Sh3d1B|Sh3p18|mKIAA1256	intersectin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-33929919-4	chr17	33929830	33930030	+	976.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009059)	promoter-TSS (NM_009059)	36.0	NM_009059	19732.0	Mm.43777	NM_009059	ENSMUSG00000041354	Rgl2	KE1.5|Rab2l|Rgt2|Rlf	ral guanine nucleotide dissociation stimulator-like 2	protein-coding	2.42077959975062	1.5023868234948	1.00702638277671	1.57081109119806	2.44259409880256	1.51375029478803	1.01226176856612	1.57938976164534	0.0392366485123811	0.97409380961542	0.998431161219273
Merged-chr14-25301296-2	chr14	25301196	25301396	+	818.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-157889.0	NM_001310666	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-58250191-4	chr15	58250074	58250274	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-35282.0	NM_026346	67731.0	Mm.25683	NM_026346	ENSMUSG00000022358	Fbxo32	4833442G10Rik|AI430017|ATROGIN1|Gm20361|MAFbx	F-box protein 32	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-107738041-2	chr4	107737904	107738104	+	615.0	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-53842.0	NM_019872	56296.0	Mm.141324	NM_019872	ENSMUSG00000028610	Dmrtb1	Dmrt6|Prp13	DMRT-like family B with proline-rich C-terminal, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-39785544-7	chr15	39785434	39785634	+	981.9206539999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164466, intron 8 of 9)	intron (NM_001164466, intron 8 of 9)	-11511.0	NR_045788	100503072.0	Mm.446661	NR_045788	ENSMUSG00000087695	Gm16291	-	predicted gene 16291	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-115048008-2	chr4	115047908	115048108	+	895.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8418.0	NM_011527	21349.0	Mm.239869	NM_011527	ENSMUSG00000028717	Tal1	Hpt|SCL/tal-1|Scl|bHLHa17|tal-1	T cell acute lymphocytic leukemia 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-83740737-2	chr8	83740637	83740837	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011925, intron 1 of 19)	B3|SINE|B2	574.0	NM_001163029	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-67527153-6	chr13	67527021	67527221	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133228)	promoter-TSS (NM_133228)	-890.0	NM_133228	170763.0	Mm.491205	NM_133228	ENSMUSG00000097333	Zfp87	2210039O17Rik|4631412O18Rik|KRAB4|Mzf22|Zfp72	zinc finger protein 87	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-43094583-4	chr5	43094471	43094671	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-138892.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16261124-4	chr7	16260942	16261142	+	867.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-1502.0	NM_007577	12273.0	Mm.247623	NM_007577	ENSMUSG00000049130	C5ar1	C5aR|C5r1|Cd88|D7Msu1	complement component 5a receptor 1	protein-coding	1.26076593696383	1.65879293276546	1.22693790501069	1.19529134379224	1.14947045721252	0.885948719070517	1.37719654205686	1.55613262377214	-0.313264542308554	0.802610124389344	0.998431161219273
Merged-chr11-81950298-4	chr11	81950190	81950390	+	934.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034013, intron 1 of 9)	intron (NM_001034013, intron 1 of 9)	18106.0	NM_001034013	11418.0	Mm.234998	NM_007384	ENSMUSG00000020704	Asic2	ACIC2|Accn1|BNC1|BNaC1|BNaC1a|Mdeg	acid-sensing (proton-gated) ion channel 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-113639429-2	chr5	113639329	113639529	+	838.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359060, intron 2 of 4)	MIR|SINE|MIR	4174.0	NM_001359060	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-129213743-4	chr6	129213661	129213861	+	772.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24284.0	NR_040265	76432.0	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-24999467-4	chr19	24999363	24999563	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028785)	promoter-TSS (NM_028785)	-66.0	NM_028785	76088.0	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	4.01818983216814	2.93070412413335	2.9490776763785	3.77153123624085	2.93334636501449	2.27260663534268	2.56332758806096	3.61855846056427	-0.901580904087305	0.17428490843257	0.642483715088275
Merged-chr4-3780559-4	chr4	3780444	3780644	+	979.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 10 of 12)	B3A|SINE|B2	55111.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	1.3399146818998	2.54782201532124	3.5917789150135	2.24331856845873	2.39653051650253	3.03342792226738	2.47810064167072	3.00882074137157	0.114925858767913	0.893503667959366	0.998431161219273
Merged-chr17-5890566-3	chr17	5890465	5890665	+	939.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025664, intron 3 of 17)	intron (NM_025664, intron 3 of 17)	49185.0	NM_025664	66616.0	Mm.89515	NM_025664	ENSMUSG00000002365	Snx9	2700073N08Rik|SDP1|SH3PX1	sorting nexin 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120490760-2	chr11	120490660	120490860	+	540.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1077.0	NM_013770	27376.0	Mm.3991	NM_013770	ENSMUSG00000025792	Slc25a10	Dic	solute carrier family 25 (mitochondrial carrier, dicarboxylate transporter), member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-29859080-2	chr2	29858980	29859180	+	711.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10414.0	NM_207298	99151.0	Mm.296336	NM_207298	ENSMUSG00000039787	Cercam	2600006K01Rik|AL024097|Ceecam1	cerebral endothelial cell adhesion molecule	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-5474155-3	chr16	5474047	5474247	+	889.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-218191.0	NM_027446	70511.0	Mm.45780	NM_027446	ENSMUSG00000022544	Eef2kmt	5730409G15Rik|Fam86|Fam86a|eEF2-KMT	eukaryotic elongation factor 2 lysine methyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-63923660-3	chr15	63923576	63923776	+	979.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_029414, intron 9 of 10)	intron (NR_029414, intron 9 of 10)	9215.0	NR_029414	74460.0	Mm.390801	NR_029414	ENSMUSG00000100127	Gsdmcl-ps	4933426G20Rik	gasdermin C-like, pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-115603839-2	chr8	115603739	115603939	+	573.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	103055.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-9277442-7	chr13	9277299	9277499	+	997.142883	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081426, intron 1 of 36)	intron (NM_001081426, intron 1 of 36)	874.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-32562874-3	chr11	32562781	32562981	+	977.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 2 of 18)	intron (NM_009288, intron 2 of 18)	29615.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-155084635-4	chr1	155084536	155084736	+	734.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1372.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-13780729-4	chr16	13780639	13780839	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039521)	promoter-TSS (NM_001039521)	40.0	NM_001039521	106298.0	Mm.288606	NM_001039521	ENSMUSG00000022682	Rrn3	AL023001|E130302O19Rik|R75565|TIF-1A|Tif1a	RRN3 RNA polymerase I transcription factor homolog (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4042317-4	chr19	4042229	4042429	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181796)	promoter-TSS (NM_181796)	-108.0	NM_181796	14869.0	Mm.441542	NM_181796	ENSMUSG00000038155	Gstp2	GSTpiA|Gst-3|Gst3	glutathione S-transferase, pi 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-35053452-2	chr7	35053352	35053552	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009884, intron 1 of 1)	MER5A|DNA|hAT-Charlie	3114.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-79642917-4	chr12	79642810	79643010	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	281823.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-101840027-4	chr13	101839943	101840143	+	892.133301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-71826.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-106760031-1	chr13	106759931	106760131	+	699.0	f1_c57bl6.idr	Intergenic	Intergenic	176927.0	NM_001360897	76582.0	Mm.132208	NM_029665	ENSMUSG00000042590	Ipo11	1700081H05Rik|2510001A17Rik|AI314624|AW555235|E330021B14Rik|Ranbp11	importin 11	protein-coding	0.840419070654851	1.90332695715802	1.94681443331658	2.68844798520837	1.41750960594203	0.924940973424237	0.900315185161448	1.50062434663669	-2.34261288974689	0.0668945041670099	0.387979500964769
Merged-chr7-7294803-2	chr7	7294656	7294856	+	972.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001302386, exon 4 of 11)	exon (NM_001302386, exon 4 of 11)	4080.0	NM_001302386	12727.0	Mm.297883	NM_011334	ENSMUSG00000000605	Clcn4	Clc4-2|Clcn4-2|clC-4	chloride channel, voltage-sensitive 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-59324589-4	chr10	59324527	59324727	+	811.025024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316370, intron 1 of 13)	intron (NM_001316370, intron 1 of 13)	1331.0	NM_001316370	18451.0	Mm.2212	NM_011030	ENSMUSG00000019916	P4ha1	AL022634|P4ha	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-135504231-2	chr2	135504131	135504331	+	568.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR25A|LTR|ERVK	78989.0	NR_015544	320684.0	Mm.421433	NR_015544	ENSMUSG00000085631	9630028H03Rik	-	RIKEN cDNA 9630028H03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-50397103-3	chr16	50396998	50397198	+	765.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027444, intron 2 of 16)	MER5A|DNA|hAT-Charlie	35291.0	NM_027444	70508.0	Mm.28940	NM_027444	ENSMUSG00000022641	Bbx	5530401J07Rik|5730403O13Rik	bobby sox HMG box containing	protein-coding	1.29909983596137	1.48466196990835	0.768892183990944	1.58682772199666	1.06786424364223	0.78529240104466	0.77186626515108	1.7671921325593	-0.518827465867109	0.720380341929411	0.998431161219273
Merged-chr18-69664577-3	chr18	69664519	69664719	+	726.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 15 of 19)	intron (NM_001361128, intron 15 of 19)	-260940.0	NM_201362	381175.0	Mm.266831	NM_201362	ENSMUSG00000038903	Ccdc68	BC046343	coiled-coil domain containing 68	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-63084137-2	chr14	63084037	63084237	+	950.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	29064.0	NR_046019	72609.0	Mm.387101	NR_046019		2700070H01Rik	-	RIKEN cDNA 2700070H01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45451483-4	chr7	45451370	45451570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030678, intron 12 of 15)	intron (NM_030678, intron 12 of 15)	8416.0	NM_010240	14325.0	Mm.30357	NM_010240	ENSMUSG00000050708	Ftl1	Ftl|Ftl-1|L-ferritin	ferritin light polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-102166849-1	chr2	102166749	102166949	+	579.0	f0_balb.idr	intron (NM_178886, intron 1 of 5)	intron (NM_178886, intron 1 of 5)	19611.0	NM_178886	241576.0	Mm.489740	NM_178886	ENSMUSG00000048058	Ldlrad3	6430500P08|AI194318|Lrad3	low density lipoprotein receptor class A domain containing 3	protein-coding	-0.953721354153451	-1.41025554057125	-1.42001056191158	-1.42802362688808	-1.44024889148474	-1.40814158675276	-1.41780223890411	-1.42658929208844	-2.11310844444413	0.543369238581748	1
Merged-chr8-71709859-3	chr8	71709814	71710014	+	883.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028267, intron 24 of 26)	intron (NR_028267, intron 24 of 26)	-8114.0	NM_028189	72297.0	Mm.290837	NM_028189	ENSMUSG00000031803	B3gnt3	2210008L19Rik	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3	protein-coding	0.58622472655169	0.136113310059706	0.692781841873937	0.125782538165599	0.264375049801706	0.137427708422173	0.703906019700163	0.126568658436421	-0.532825481499575	0.793180551701558	1
Merged-chr6-146633801-3	chr6	146633717	146633917	+	755.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026281, intron 1 of 11)	intron (NM_026281, intron 1 of 11)	775.0	NM_026281	67623.0	Mm.278037	NM_026281	ENSMUSG00000040234	Tm7sf3	2010003B14Rik|NARP1	transmembrane 7 superfamily member 3	protein-coding	1.49830841872675	1.3238165540329	1.96705910470735	2.08466870347959	1.37746066666765	1.68238023061942	1.62812473790071	1.43631089585459	-0.76162111352077	0.480215485559996	0.928595475837891
Merged-chr15-100755109-5	chr15	100755066	100755266	+	699.985718	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6581.0	NM_021530	59033.0	Mm.209856	NM_021530	ENSMUSG00000023032	Slc4a8	AW493845|C230026C11|NDCBE|kNBC-3	solute carrier family 4 (anion exchanger), member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95315758-1	chr3	95315658	95315858	+	1000.0	f0_balb.idr	intron (NM_029789, intron 1 of 10)	intron (NM_029789, intron 1 of 10)	568.0	NM_029789	76893.0	Mm.181009	NM_029789	ENSMUSG00000015714	Cers2	0610013I17Rik|AI225939|Lass2|TRH3	ceramide synthase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-123027030-2	chr8	123026930	123027130	+	729.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 1 of 12)	intron (NM_001081379, intron 1 of 12)	15254.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-120786336-1	chr6	120786236	120786436	+	756.0	f1_balb.idr	exon (NM_001081048, exon 4 of 10)	exon (NM_001081048, exon 4 of 10)	12568.0	NM_001081048	71803.0	Mm.425340	NM_001081048	ENSMUSG00000004902	Slc25a18	1500015I14Rik|AW125787	solute carrier family 25 (mitochondrial carrier), member 18	protein-coding	-1.84456824087626	-1.81369603968745	-1.82303204814395	-1.83070092346192	-1.84240106943552	-1.51787681909439	-1.82091858046888	-1.82932819844659	1.64481029852639	0.639921510788462	1
Merged-chr12-8869627-2	chr12	8869527	8869727	+	595.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1K|LTR|ERVL-MaLR	-51680.0	NM_008640	17775.0	Mm.30071	NM_008640	ENSMUSG00000020585	Laptm4a	AA286466|LAPTM4|MTP|Mtrp|mKIAA0108	lysosomal-associated protein transmembrane 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-85747878-2	chr9	85747778	85747978	+	650.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175371, intron 1 of 27)	B2_Mm1t|SINE|B2	1456.0	NM_001081282	108837.0	Mm.22315	NM_175371	ENSMUSG00000035941	Ibtk	5430411K16Rik|AA409502|BTKI|mKIAA1417	inhibitor of Bruton agammaglobulinemia tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-20711174-2	chr14	20711074	20711274	+	797.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027996, intron 3 of 25)	intron (NM_027996, intron 3 of 25)	3622.0	NM_001252082	268721.0	Mm.275082	NM_027996	ENSMUSG00000021819	Zswim8	2310021P13Rik|4832404P21Rik|Kiaa0913|mKIAA0913	zinc finger SWIM-type containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-46907249-4	chr13	46907145	46907345	+	815.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010617, intron 2 of 37)	intron (NM_010617, intron 2 of 37)	22473.0	NM_010617	16553.0	Mm.342703	NM_010617	ENSMUSG00000021375	Kif13a	4930505I07Rik|mKIAA4109	kinesin family member 13A	protein-coding	2.80048148832104	3.14996568697278	2.95190022450556	3.43879562875425	1.83702989695279	1.53596789531403	2.19925329072855	3.39785004724326	-1.13890994718433	0.162883446661029	0.62517043774973
Merged-chr9-86477034-4	chr9	86476931	86477131	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177208, intron 1 of 38)	L1MB2|LINE|L1	9877.0	NM_177208	320615.0	Mm.245500	NM_177208	ENSMUSG00000034973	Dopey1	B130005I07Rik|BC035275|C130028L17|D9Ertd809e	dopey family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-45041950-2	chr2	45041850	45042050	+	584.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355291, intron 2 of 9)	intron (NM_001355291, intron 2 of 9)	-18773.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-36557525-3	chr13	36557422	36557622	+	904.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	176955.0	NM_153529	68404.0	Mm.232930	NM_153529	ENSMUSG00000039114	Nrn1	0710008J23Rik|Cpg15|Nrn	neuritin 1	protein-coding	1.86173605010906	1.99529003831423	1.02470698979151	1.73663000673782	2.35525723444582	2.34142317701659	1.03018353461123	1.00862362188682	0.432792589084189	0.728947859547926	0.998431161219273
Merged-chr1-51494069-4	chr1	51493970	51494170	+	996.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15671.0	NM_001310549	109019.0	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-101743395-2	chr13	101743295	101743495	+	716.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077495, intron 2 of 15)	B4|SINE|B4	24822.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-122573214-3	chr3	122573119	122573319	+	904.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114665, intron 2 of 15)	intron (NM_001114665, intron 2 of 15)	-31538.0	NR_106117	102465764.0		NR_106117	ENSMUSG00000104773	Mir7657	mmu-mir-7657	microRNA 7657	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123136604-4	chr5	123136518	123136718	+	976.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3989.0	NM_175092	23912.0	Mm.253876	NM_175092	ENSMUSG00000029449	Rhof	AI845056|AV026554|Arhf|Ifld1|Rif	ras homolog family member F (in filopodia)	protein-coding	3.4737378265649	2.56925048135439	3.53922134906398	4.22233533234322	2.93909485886238	3.6861803864394	3.85046680502192	3.19654089001719	-0.18650301753789	0.754274997831472	0.998431161219273
Merged-chr17-5682401-2	chr17	5682301	5682501	+	658.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 2 of 8)	RSINE1|SINE|B4	-116256.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-66175154-2	chr14	66175068	66175268	+	563.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 12 of 30)	intron (NM_001162366, intron 12 of 30)	34208.0	NM_144803	110902.0	Mm.57350	NM_144803	ENSMUSG00000022041	Chrna2	Acra-2|Acra2|BC011490	cholinergic receptor, nicotinic, alpha polypeptide 2 (neuronal)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-63108601-2	chr9	63108501	63108701	+	679.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	38379.0	NM_172446	207667.0	Mm.36349	NM_172446	ENSMUSG00000022245	Skor1	AV273001|C230094B15Rik|Corl1|Lbxcor1	SKI family transcriptional corepressor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-37601686-2	chr6	37601586	37601786	+	583.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MCa|LINE|L1	71513.0	NM_145364	208665.0	Mm.262635	NM_145364	ENSMUSG00000038641	Akr1d1	-	aldo-keto reductase family 1, member D1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-3472221-2	chr8	3472113	3472313	+	568.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029598, intron 1 of 8)	ORR1A3-int|LTR|ERVL-MaLR	1351.0	NM_029598	76406.0	Mm.74996	NM_029598	ENSMUSG00000040340	Tex45	1700019B03Rik	testis expressed 45	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117810699-5	chr11	117810652	117810852	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009304, intron 1 of 3)	intron (NM_009304, intron 1 of 3)	1085.0	NM_009304	20973.0	Mm.468228	NM_009304	ENSMUSG00000048277	Syngr2	Clast2|cellugyrin	synaptogyrin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-51763674-4	chr11	51763557	51763757	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025535)	promoter-TSS (NM_025535)	-6.0	NM_025535	66397.0	Mm.196592	NM_025535	ENSMUSG00000020386	Sar1b	2310075M17Rik|2900019I22Rik|CMRD|Sara1b|Sara2|Sarb	secretion associated Ras related GTPase 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-102745911-4	chr2	102745807	102746007	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_153852, exon 2 of 3)	non-coding (NR_153852, exon 2 of 3)	853.0	NR_153852	102637542.0	Mm.371582	NR_153852		Gm13872	-	predicted gene 13872	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-102519412-2	chr15	102519312	102519512	+	894.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009319, intron 2 of 8)	intron (NM_009319, intron 2 of 8)	1220.0	NM_009319	21357.0	Mm.291485	NM_009319	ENSMUSG00000023051	Tarbp2	Prbp|TRBP	TARBP2, RISC loading complex RNA binding subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-86895209-2	chr12	86895109	86895309	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10395.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-25215955-2	chr8	25215855	25216055	+	834.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-14413.0	NM_177089	320165.0	Mm.308452	NM_177089	ENSMUSG00000065954	Tacc1	4833447E04Rik|AA960202|B230378H13Rik	transforming, acidic coiled-coil containing protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-47074020-2	chr7	47073920	47074120	+	982.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9204.0	NR_106023	102465639.0		NR_106023	ENSMUSG00000098960	Mir7056	Gm27696|mmu-mir-7056	microRNA 7056	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-34870460-6	chr6	34870433	34870633	+	723.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197986, intron 1 of 1)	intron (NM_197986, intron 1 of 1)	7387.0	NM_197986	68487.0	Mm.248440	NM_197986	ENSMUSG00000057137	Tmem140	1110007F12Rik	transmembrane protein 140	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-113046221-4	chr6	113046132	113046332	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355266)	promoter-TSS (NM_001355266)	-70.0	NM_001355266	14911.0	Mm.781	NM_008188	ENSMUSG00000030264	Thumpd3	AW556087|Gt(ROSA)26asSor|Gtrosa26as	THUMP domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-91425592-4	chr8	91425491	91425691	+	870.05835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011936, intron 3 of 8)	MTD|LTR|ERVL-MaLR	112066.0	NM_011936	26383.0	Mm.4375	NM_011936	ENSMUSG00000055932	Fto	AW743446|mKIAA1752	fat mass and obesity associated	protein-coding	2.50777412127465	0.917878201197459	0.889206972818826	0.866070994338341	1.4435991304532	0.924153163613593	2.49651779017151	2.48147167461968	1.12114066351562	0.635674817814386	0.982417279970648
Merged-chr5-74792482-3	chr5	74792385	74792585	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-89582.0	NM_001159577	16924.0	Mm.440403	NM_010727	ENSMUSG00000029228	Lnx1	Lnx	ligand of numb-protein X 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-97925019-4	chr15	97924940	97925140	+	969.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16744.0	NM_009504	22337.0	Mm.245084	NM_009504	ENSMUSG00000022479	Vdr	Nr1i1	vitamin D (1,25-dihydroxyvitamin D3) receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-43106444-3	chr16	43106342	43106542	+	730.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285805, intron 2 of 10)	MLT2B4|LTR|ERVL	-140842.0	NM_181058	56490.0	Mm.136238	NM_019778	ENSMUSG00000022708	Zbtb20	1300017A20Rik|7330412A13Rik|A930017C21Rik|D16Wsu73e|DPZF|HOF|J20|ODA-8S|Oda8|Tg(PDGFB-APPSwInd)20Lms|Zfp288	zinc finger and BTB domain containing 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-43554522-3	chr1	43554430	43554630	+	971.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010879, exon 4 of 5)	exon (NM_010879, exon 4 of 5)	108779.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-39004588-4	chr2	39004517	39004717	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025592, intron 2 of 3)	intron (NM_025592, intron 2 of 3)	514.0	NM_025592	66489.0	Mm.345333	NM_025592	ENSMUSG00000062997	Rpl35	2410039E09Rik	ribosomal protein L35	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-86587145-4	chr1	86587075	86587275	+	959.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_172974, exon 2 of 8)	5' UTR (NM_172974, exon 2 of 8)	4254.0	NM_001360887	26895.0	Mm.12973	NM_172974	ENSMUSG00000026240	Cops7b	D1Wsu66e|E130114M23	COP9 signalosome subunit 7B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-61306712-4	chr3	61306608	61306808	+	842.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57799.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30697952-2	chr2	30697852	30698052	+	602.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19941.0	NR_136917	665635.0	Mm.450149	NR_136917		Gm14486	-	predicted gene 14486	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-31615615-4	chr15	31615493	31615693	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356313, intron 5 of 5)	intron (NM_001356313, intron 5 of 5)	13477.0	NM_001356313	68073.0	Mm.119185	NM_026546	ENSMUSG00000039065	Fam173b	A930016P21Rik|AA987072	family with sequence similarity 173, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-9729818-2	chr18	9729718	9729918	+	797.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_130449, intron 2 of 9)	(TG)n|Simple_repeat|Simple_repeat	22170.0	NM_130449	140792.0	Mm.218571	NM_130449	ENSMUSG00000036103	Colec12	CL-P1|SRCL|Scara4	collectin sub-family member 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106194251-2	chr11	106194151	106194351	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028126)	promoter-TSS (NM_028126)	-648.0	NM_001252449	72149.0	Mm.403722	NM_028126	ENSMUSG00000069631	Strada	2610019A05Rik|6030402H20Rik|AI480680|E130112C09Rik	STE20-related kinase adaptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-86082543-4	chr12	86082454	86082654	+	965.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199843)	promoter-TSS (NM_001199843)	-7.0	NM_029601	76411.0	Mm.292345	NM_029601	ENSMUSG00000007867	Ift43	1700019E19Rik|R75064	intraflagellar transport 43	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65579101-4	chr9	65578982	65579182	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153119, intron 1 of 5)	MIR3|SINE|MIR	1005.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28408042-4	chr17	28407933	28408133	+	980.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010220, intron 8 of 10)	intron (NM_010220, intron 8 of 10)	-42817.0	NM_021478	22157.0	Mm.42102	NM_021478	ENSMUSG00000037446	Tulp1	Tulp1l	tubby like protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76656352-2	chr15	76656252	76656452	+	857.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019396, intron 2 of 4)	GC_rich|Low_complexity|Low_complexity	542.0	NM_001357882	54151.0	Mm.247752	NM_019396	ENSMUSG00000053929	Cyhr1	1110031M01Rik|AU042374|Chrp	cysteine and histidine rich 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-99956598-4	chr12	99956498	99956698	+	879.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7901.0	NM_001164426	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-86683059-2	chr11	86682959	86683159	+	921.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175004)	promoter-TSS (NM_175004)	-924.0	NM_175004	217057.0	Mm.24868	NM_175004	ENSMUSG00000072582	Ptrh2	A230072I16Rik|Bit1|CGI-147	peptidyl-tRNA hydrolase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-120611951-2	chr5	120611851	120612051	+	825.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029096, intron 1 of 2)	ID_B1|SINE|B4	638.0	NM_029096	100764.0	Mm.9654	NM_029096	ENSMUSG00000029600	Rita1	1110008J03Rik|AI853657|C86297|Rita	RBPJ interacting and tubulin associated 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-145199929-2	chr5	145199829	145200029	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023322, intron 1 of 2)	ID_B1|SINE|B4	1953.0	NM_023322	67235.0	Mm.432480	NM_023322	ENSMUSG00000029627	Zkscan14	2310046C23Rik|2810437E14Rik|Zfp99|Znf394	zinc finger with KRAB and SCAN domains 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4285678-2	chr19	4285578	4285778	+	773.166626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_130863)	TTS (NM_130863)	-2541.0	NM_026720	68423.0	Mm.23642	NM_026720	ENSMUSG00000005986	Ankrd13d	0710001P18Rik|AI430801	ankyrin repeat domain 13 family, member D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-84747078-2	chr12	84746978	84747178	+	593.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26034.0	NM_023409	67963.0	Mm.282556	NM_023409	ENSMUSG00000021242	Npc2	2700012J19Rik|AA408070|AU045843|HE1	NPC intracellular cholesterol transporter 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-43531629-2	chr14	43531529	43531729	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	76384.0	NM_001098269	100042342.0	Mm.429750	NM_001098269	ENSMUSG00000095528	Gm10375	-	predicted gene 10375	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-58891029-2	chr9	58890929	58891129	+	903.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008684, intron 23 of 28)	intron (NM_008684, intron 23 of 28)	67517.0	NM_001081192	330953.0	Mm.151967	NM_001081192	ENSMUSG00000032338	Hcn4	Bcng3|Hcn3	hyperpolarization-activated, cyclic nucleotide-gated K+ 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-43031498-3	chr5	43031399	43031599	+	869.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-201964.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140814610-4	chr5	140814505	140814705	+	997.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010302, intron 1 of 3)	RMER17C|LTR|ERVK	15826.0	NM_010302	14673.0	Mm.370185	NM_010302	ENSMUSG00000000149	Gna12	AI414047|AI504261|Galpha12	guanine nucleotide binding protein, alpha 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24476065-2	chr17	24475928	24476128	+	906.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_175682)	TTS (NM_175682)	2144.0	NM_175682	319259.0	Mm.258355	NM_175682	ENSMUSG00000045744	Bricd5	9930021D14Rik	BRICHOS domain containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70606731-3	chr8	70606652	70606852	+	962.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133772, intron 1 of 16)	intron (NM_133772, intron 1 of 16)	1562.0	NM_133772	76900.0	Mm.6667	NM_133772	ENSMUSG00000070003	Ssbp4	1210002E11Rik|AW743380|Sspb4	single stranded DNA binding protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34858824-4	chr17	34858738	34858938	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008198, intron 10 of 17)	intron (NM_008198, intron 10 of 17)	-1206.0	NR_105938	102465587.0		NR_105938	ENSMUSG00000098445	Mir6972	Gm27810|mmu-mir-6972	microRNA 6972	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-53360323-2	chr18	53360223	53360423	+	731.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029394, intron 3 of 6)	intron (NM_029394, intron 3 of 6)	57684.0	NM_008908	19038.0	Mm.4587	NM_008908	ENSMUSG00000024538	Ppic	CyP-20c	peptidylprolyl isomerase C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21244196-2	chr9	21244096	21244296	+	743.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_053190, exon 3 of 3)	exon (NM_053190, exon 3 of 3)	4247.0	NM_053190	94226.0	Mm.190619	NM_053190	ENSMUSG00000045087	S1pr5	Edg8|S1P5|lpB4	sphingosine-1-phosphate receptor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-38709366-3	chr16	38709289	38709489	+	921.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020260, intron 1 of 11)	intron (NM_020260, intron 1 of 11)	3646.0	NM_020260	12549.0	Mm.370848	NM_020260	ENSMUSG00000022799	Arhgap31	5830477L08Rik|AU041750|Cdgap|D330026I07Rik	Rho GTPase activating protein 31	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-92678741-4	chr13	92678638	92678838	+	726.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172588, intron 2 of 11)	intron (NM_172588, intron 2 of 11)	67600.0	NM_172588	218442.0	Mm.297970	NM_172588	ENSMUSG00000021703	Serinc5	A130038L21Rik|AIGP3|C86123|TPO1	serine incorporator 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-27192895-2	chr3	27192795	27192995	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 1 of 4)	ORR1A2|LTR|ERVL-MaLR	9891.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-115666315-2	chr6	115666215	115666415	+	588.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029780, intron 1 of 16)	B3A|SINE|B2	9573.0	NM_001356334	110157.0	Mm.184163	NM_029780	ENSMUSG00000000441	Raf1	6430402F14Rik|AA990557|BB129353|Craf1|D830050J10Rik|Raf-1|c-Raf|cRaf|v-Raf	v-raf-leukemia viral oncogene 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-96459377-4	chr10	96459282	96459482	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-157619.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-5243272-2	chr15	5243172	5243372	+	792.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008965, intron 1 of 2)	intron (NM_008965, intron 1 of 2)	915.0	NM_001136079	19219.0	Mm.18509	NM_008965	ENSMUSG00000039942	Ptger4	EP4|Ptgerep4	prostaglandin E receptor 4 (subtype EP4)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-148532232-4	chr2	148532140	148532340	+	996.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-88705.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-32363706-2	chr12	32363606	32363806	+	725.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-15083.0	NM_001162903	72123.0	Mm.341352	NM_028111	ENSMUSG00000090946	Ccdc71l	2010109K11Rik|AV375874	coiled-coil domain containing 71 like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-33138073-2	chr12	33137973	33138173	+	809.333313	f1_balb.idr|f1_c57bl6.idr	intron (NR_015602, intron 3 of 5)	ORR1B1|LTR|ERVL-MaLR	9513.0	NR_015602	320046.0	Mm.208337	NR_015602	ENSMUSG00000052125	F730043M19Rik	-	RIKEN cDNA F730043M19 gene	ncRNA	2.54393137265265	1.62836031446711	2.20928806519842	2.25774843879844	2.25663820370114	1.63781911707352	2.2260775141791	2.26907472236565	-0.205574731723867	0.820848694152471	0.998431161219273
Merged-chr16-10933625-2	chr16	10933525	10933725	+	733.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18828.0	NR_131135	545180.0	Mm.373756	NR_131135	ENSMUSG00000095369	Gm21859	-	predicted gene, 21859	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33837483-3	chr16	33837403	33837603	+	959.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 1 of 14)	intron (NM_001145884, intron 1 of 14)	7838.0	NM_001145884	16419.0	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-78489816-2	chr9	78489716	78489916	+	767.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8092.0	NM_010106	13627.0	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-105290897-3	chr13	105290837	105291037	+	726.866638	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360891, intron 1 of 7)	MMVL30-int|LTR|ERV1	2077.0	NM_027934	71816.0	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-50591913-2	chr9	50591813	50592013	+	945.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11936.0	NM_025848	66925.0	Mm.10406	NM_025848	ENSMUSG00000000171	Sdhd	3110001M13Rik|AVLL5809|C78570|PRO19626	succinate dehydrogenase complex, subunit D, integral membrane protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97656509-2	chr11	97656409	97656609	+	880.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6903.0	NM_139311	246198.0	Mm.23685	NM_139311	ENSMUSG00000038437	Mllt6	AI315037|Af17	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80207422-4	chr7	80207302	80207502	+	989.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360135, intron 1 of 13)	intron (NM_001360135, intron 1 of 13)	8961.0	NM_001360135	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-57574982-2	chr3	57574882	57575082	+	681.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001168281, exon 2 of 7)	exon (NM_001168281, exon 2 of 7)	894.0	NM_133784	97064.0	Mm.405029	NM_133784	ENSMUSG00000027803	Wwtr1	2310058J06Rik|2610021I22Rik|C78399|Taz	WW domain containing transcription regulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4791600-2	chr16	4791500	4791700	+	620.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR40|LTR|ERVK	-1308.0	NM_001358082	66626.0	Mm.157648	NM_025670	ENSMUSG00000004071	Cdip1	2700048O17Rik|5730403B10Rik|AU018521|AW742692|CDIP	cell death inducing Trp53 target 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-49783546-4	chr16	49783475	49783675	+	994.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72079.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-55847823-4	chr7	55847718	55847918	+	925.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011370, intron 1 of 30)	intron (NM_011370, intron 1 of 30)	5747.0	NM_001164661	20430.0	Mm.37249	NM_011370	ENSMUSG00000030447	Cyfip1	E030028J09Rik|P140SRA-1|P140sra1|Shyc|Sra-1|Sra1|l(7)1Rl|l71Rl|l7Rl1|mKIAA0068|pl-1	cytoplasmic FMR1 interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-58288969-4	chr4	58288849	58289049	+	967.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037128, intron 1 of 14)	intron (NM_001037128, intron 1 of 14)	2987.0	NM_010944	18198.0	Mm.16148	NM_010944	ENSMUSG00000057280	Musk	Mdk4|Mlk|Nsk1|Nsk2|Nsk3	muscle, skeletal, receptor tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-77619300-2	chr10	77619200	77619400	+	647.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_125904)	TTS (NR_125904)	-3021.0	NM_019803	22213.0	Mm.458125	NM_019803	ENSMUSG00000009293	Ube2g2	1110003O05Rik|D10Xrf369|UBC7|Ubc7p	ubiquitin-conjugating enzyme E2G 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-86524972-2	chr6	86524872	86525072	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_011865, exon 1 of 1)	exon (NM_011865, exon 1 of 1)	1217.0	NM_011865	23983.0	Mm.274146	NM_011865	ENSMUSG00000051695	Pcbp1	WBP17|[a]CP-1|alphaCP-1|hnRNP E1|hnRNP-E1	poly(rC) binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80161888-6	chr10	80161815	80162015	+	905.388916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 1 of 4)	intron (NR_038088, intron 1 of 4)	-5924.0	NM_007705	12696.0	Mm.17898	NM_007705	ENSMUSG00000045193	Cirbp	Cirp|R74941	cold inducible RNA binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47842468-4	chr17	47842357	47842557	+	932.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7766.0	NM_001109973	17240.0	Mm.329100	NM_010783	ENSMUSG00000032717	Mdfi	I-mf|I-mfa	MyoD family inhibitor	protein-coding	3.43377256568244	3.17051875686162	3.0629579200339	2.77214687712677	3.0120442688427	1.94346756333356	3.78920111286844	2.039818884767	-0.328920273652423	0.658129283316485	0.988704682801132
Merged-chr1-156617420-3	chr1	156617317	156617517	+	649.155579	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001136104, intron 1 of 12)	(GGAA)n|Simple_repeat|Simple_repeat	56922.0	NM_023141	30935.0	Mm.206737	NM_023141	ENSMUSG00000060519	Tor3a	Adir	torsin family 3, member A	protein-coding	0.430313541182816	0.475386453839483	0.4610479959318	1.36937634664393	0.433247274933594	1.71740653968624	0.464243989558048	1.47678174541643	1.5354599361928	0.621719929080621	0.979537295922371
Merged-chr11-59534907-4	chr11	59534823	59535023	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28|LTR|ERVL	-6646.0	NM_001359638	216799.0	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-58364091-3	chr1	58363933	58364133	+	787.75	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001008419, intron 34 of 35)	intron (NM_001008419, intron 34 of 35)	-29103.0	NM_025824	66882.0	Mm.21848	NM_025824	ENSMUSG00000051223	Bzw1	1200015E15Rik|mKIAA0005	basic leucine zipper and W2 domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-21139211-3	chr19	21139102	21139302	+	773.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34492.0	NR_126458	75354.0	Mm.243873	NR_126458		4930554I06Rik	-	RIKEN cDNA 4930554I06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45300818-2	chr7	45300718	45300918	+	724.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17945.0	NM_001033176	76713.0	Mm.425445	NM_001033176	ENSMUSG00000070568	Slc6a21	1700039E15Rik|Gm19188	solute carrier family 6 member 21	protein-coding	0.0526860516267046	0.568519260921229	0.0647779853635896	0.0602377197073229	0.202635188402438	0.0719772653415121	0.402770911764858	0.793797794229206	1.37333953954776	0.507519889384042	1
Merged-chr15-11400340-1	chr15	11400240	11400440	+	540.0	f1_c57bl6.idr	promoter-TSS (NM_033074)	promoter-TSS (NM_033074)	-682.0	NM_033074	110960.0	Mm.286061	NM_033074	ENSMUSG00000022241	Tars	D15Wsu59e|ThrRS	threonyl-tRNA synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140566159-2	chr5	140566059	140566259	+	667.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1092.0	NM_030022	77998.0	Mm.160040	NM_030022	ENSMUSG00000036586	Grifin	E130101O17Rik	galectin-related inter-fiber protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-47408872-4	chr19	47408727	47408927	+	849.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008018, intron 2 of 14)	intron (NM_008018, intron 2 of 14)	55584.0	NM_001164717	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	1.126601672295	1.46128806699176	2.16488268699969	1.99238944417742	1.90452186743026	2.55495479483387	2.06830502614553	1.74121070936727	0.932204414943801	0.370978736634194	0.863911489096448
Merged-chr17-23985707-2	chr17	23985607	23985807	+	559.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C2|LTR|ERVK	-10477.0	NM_013921	30943.0	Mm.142568	NM_013921	ENSMUSG00000024124	Prss30	2010015P21Rik|Disp|Disp1|Tmprss8	protease, serine 30	protein-coding	-0.885343988398316	-0.873197811915141	-0.879568534556306	-0.464008891048743	-0.884809499207366	-0.870535133016439	-0.878945546113603	-0.458408536970068	0.0285539633070526	0.992673327504828	1
Merged-chr9-64734341-2	chr9	64734241	64734441	+	595.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_017382, intron 1 of 4)	intron (NM_017382, intron 1 of 4)	3415.0	NM_017382	53869.0	Mm.1387	NM_017382	ENSMUSG00000004771	Rab11a	-	RAB11A, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153168339-4	chr2	153168235	153168435	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133847, intron 1 of 17)	intron (NM_133847, intron 1 of 17)	7034.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-67933269-4	chr14	67933151	67933351	+	929.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177780, intron 1 of 51)	CpG	321.0	NM_177780	68813.0	Mm.258155	NM_177780	ENSMUSG00000044447	Dock5	1110060D06Rik|AI666732|AI956923|BC016533|E130320D18|lr2|rlc	dedicator of cytokinesis 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-45667369-4	chr14	45667277	45667477	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9234.0	NM_001042719	114874.0	Mm.121918	NM_176845	ENSMUSG00000037697	Ddhd1	Mir5131|PA-PLA1	DDHD domain containing 1	protein-coding	5.51174981188932	5.93849587858396	4.16161005157755	5.75191763628651	5.50742260037493	5.85547547767452	4.3999338758344	5.25059673458745	-0.15888033975017	0.682170914315209	0.995882295196263
Merged-chr9-85327356-4	chr9	85327257	85327457	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001160378)	promoter-TSS (NM_001160378)	-207.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	5.71885285703232	5.47588822257988	6.04276578127152	5.18056277482063	5.97930571171957	5.83654662415691	6.45318199615716	5.26895479174658	0.340327502227477	0.253573874010798	0.751694505775946
Merged-chr14-34490117-4	chr14	34490021	34490221	+	782.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009758, intron 1 of 12)	intron (NM_009758, intron 1 of 12)	12425.0	NM_009758	12166.0	Mm.237825	NM_009758	ENSMUSG00000021796	Bmpr1a	1110037I22Rik|ALK-3|ALK3|AU045487|BMPR-1A|BMPR-IA|Bmpr|SKR5	bone morphogenetic protein receptor, type 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-96328887-4	chr15	96328777	96328977	+	889.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175251, intron 3 of 20)	intron (NM_175251, intron 3 of 20)	41355.0	NM_175251	77044.0	Mm.17166	NM_175251	ENSMUSG00000033237	Arid2	1700124K17Rik|4432409D24Rik|BAF200|zipzap/p200	AT rich interactive domain 2 (ARID, RFX-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6261160-2	chr19	6261060	6261260	+	899.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_194348, intron 38 of 39)	B3A|SINE|B2	-3483.0	NR_029830	723957.0		NR_029830	ENSMUSG00000065582	Mir194-2	Mirn194-2|mir-194-2	microRNA 194-2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-149557984-2	chr4	149557884	149558084	+	552.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023465, intron 4 of 4)	intron (NM_023465, intron 4 of 4)	12867.0	NM_001141930	67087.0	Mm.299735	NM_023465	ENSMUSG00000028988	Ctnnbip1	1110008O09Rik|2310001I19Rik|AW457332|Catnbip1|Icat	catenin beta interacting protein 1	protein-coding	1.0000082567079	1.53561635253934	1.66489232956562	0.895010418726958	0.8620116585175	1.29443597435499	0.924312160823833	0.704653437741777	-1.54952268296017	0.260794568516698	0.76193504051867
Merged-chr11-29707034-4	chr11	29706930	29707130	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_194051, exon 3 of 9)	exon (NM_194051, exon 3 of 9)	-11533.0	NM_024226	68585.0	Mm.192580	NM_024226	ENSMUSG00000020458	Rtn4	1110020G17Rik|AA407876|AA409940|AA960376|ASY|C130026I10Rik|NOGO|NSP-CL|NgA|Nogo-A|Nogo-B|Nogo-C|mKIAA0886|mKIAA4153	reticulon 4	protein-coding	3.03058048940672	4.42501709247502	3.79441843320687	3.87664819146594	3.92314951491977	2.14856435181606	3.59992819507054	3.40610308097112	-0.641706412216027	0.286193440536236	0.790669838252385
Merged-chr10-21827628-4	chr10	21827530	21827730	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54554.0	NM_001161845	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-65371203-1	chr7	65371103	65371303	+	729.0	f0_balb.idr	promoter-TSS (NM_001163574)	promoter-TSS (NM_001163574)	41.0	NM_001163574	21872.0	Mm.4342	NM_009386	ENSMUSG00000030516	Tjp1	ZO1	tight junction protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-117553581-4	chr6	117553464	117553664	+	816.270874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58329.0	NR_152214	100126203.0	Mm.217172	NR_152214		6820426E19Rik	Gm43983	RIKEN cDNA 6820426E19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-35437962-1	chr2	35437862	35438062	+	657.666687	f0_balb.idr	intron (NM_010283, intron 1 of 8)	MIRb|SINE|MIR	23487.0	NM_001308299	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-52331575-4	chr1	52331462	52331662	+	838.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-98330.0	NM_001113383	14660.0	Mm.398608	NM_001081081	ENSMUSG00000026103	Gls	6330442B14|AI314027|B230365M23Rik	glutaminase	protein-coding	2.40478962638587	1.94180662753564	2.30285821303802	2.90200067075205	3.64340427042923	3.56611340342033	3.20753715389341	3.71428732186328	1.94163741917192	0.00306053387561778	0.0460153952877972
Merged-chr11-103346860-4	chr11	103346764	103346964	+	981.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045346, exon 3 of 4)	non-coding (NR_045346, exon 3 of 4)	2111.0	NR_045346	653030.0	Mm.440684	NR_045346	ENSMUSG00000085887	Arhgap27os3	F830206d12rik|Gm11648	Rho GTPase activating protein 27, opposite strand 3	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-45852668-4	chr11	45852550	45852750	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045520, intron 1 of 11)	intron (NM_001045520, intron 1 of 11)	686.0	NM_001045520	216705.0	Mm.169673	NM_001045520	ENSMUSG00000006169	Clint1	AI642036|AW537616|C530049I24Rik|Enth|Epn4|F630206G17Rik|mKIAA0171	clathrin interactor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-156532213-4	chr1	156532115	156532315	+	958.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ETnERV-int|LTR|ERVK	-26572.0	NM_009595	11352.0	Mm.329515	NM_009595	ENSMUSG00000026596	Abl2	AA536808|Abll|Arg	v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)	protein-coding	5.9913888542122	5.54554278076134	6.02745341540013	6.05858684353353	5.56176147527736	6.20855759642258	5.21531045988597	5.67976927250022	-0.242968971142681	0.370695526775774	0.863727598865104
Merged-chr11-101171460-4	chr11	101171313	101171513	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346769)	promoter-TSS (NM_001346769)	-41.0	NM_001346769	217198.0	Mm.273254	NM_146030	ENSMUSG00000035172	Plekhh3	BC020025	pleckstrin homology domain containing, family H (with MyTH4 domain) member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-128927554-2	chr4	128927454	128927654	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	34901.0	NM_172875	242669.0	Mm.215814	NM_172875	ENSMUSG00000028789	Azin2	4933429I20Rik|Adc|Azi2|B930082O19|ODC-p|Odcp	antizyme inhibitor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85517752-2	chr12	85517652	85517852	+	836.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43862.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-73693565-4	chr12	73693472	73693672	+	982.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008856, intron 4 of 13)	B3|SINE|B2	108776.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-36797356-4	chr9	36797259	36797459	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199494)	promoter-TSS (NM_001199494)	34.0	NM_001199494	13663.0	Mm.4337	NM_007915	ENSMUSG00000062762	Ei24	AA536736|AI115355|PIG8	etoposide induced 2.4 mRNA	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-16951475-4	chr17	16951384	16951584	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-112619.0	NM_001005358	449000.0	Mm.483718	NM_001005358	ENSMUSG00000096696	Zfp960	-	zinc finger protein 960	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-10476734-4	chr10	10476644	10476844	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4430.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70776126-3	chr14	70776017	70776217	+	653.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010071, intron 3 of 4)	intron (NM_010071, intron 3 of 4)	1736.0	NM_010071	13449.0	Mm.243323	NM_010071	ENSMUSG00000022102	Dok2	DokR|Frip|dok-R	docking protein 2	protein-coding	2.32827038579289	1.87520678417191	1.08675449984662	1.87579000281602	1.41071010025421	1.11351127993198	2.06052099441254	1.88592000100318	-0.561129655997969	0.627367068685706	0.980912176761026
Merged-chr3-97761346-4	chr3	97761243	97761443	+	916.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039376, intron 8 of 46)	intron (NM_001039376, intron 8 of 46)	6671.0	NM_178080	83679.0	Mm.129840	NM_031401	ENSMUSG00000038170	Pde4dip	4732458A06Rik|9430063L05Rik|C87016|D130016K21Rik|D3Bwg1078e|Usmg4|mKIAA0454	phosphodiesterase 4D interacting protein (myomegalin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-107044401-2	chr13	107044301	107044501	+	637.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21831.0	NR_015471	100040322.0	Mm.133867	NR_015471	ENSMUSG00000071181	3830408C21Rik	-	RIKEN cDNA 3830408C21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36922270-4	chr1	36922184	36922384	+	965.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018872, intron 1 of 40)	intron (NM_018872, intron 1 of 40)	17243.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69802552-2	chr11	69802452	69802652	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291104)	promoter-TSS (NM_001291104)	-836.0	NM_010198	14166.0	Mm.269011	NM_010198	ENSMUSG00000042826	Fgf11	Fgf-11|Fhf-3|Fhf3	fibroblast growth factor 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-43916233-3	chr1	43916138	43916338	+	627.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-17756.0	NM_001310540	22019.0	Mm.401675	NM_009418	ENSMUSG00000041763	Tpp2	TPP-2|TppII	tripeptidyl peptidase II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-7745442-2	chr10	7745342	7745542	+	999.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011835, intron 4 of 10)	intron (NM_011835, intron 4 of 10)	19442.0	NM_011835	23924.0	Mm.28127	NM_011835	ENSMUSG00000019794	Katna1	-	katanin p60 (ATPase-containing) subunit A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80678825-4	chr10	80678778	80678978	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2585.0	NM_021462	17347.0	Mm.42126	NM_021462	ENSMUSG00000020190	Mknk2	2010016G11Rik|Gprk7|Mnk2	MAP kinase-interacting serine/threonine kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-69707542-4	chr14	69707443	69707643	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001301652)	promoter-TSS (NM_001301652)	41.0	NM_001146012	71843.0	Mm.27738	NM_001146012	ENSMUSG00000034194	R3hcc1	1700020M16Rik|AA407796	R3H domain and coiled-coil containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-32642440-4	chr11	32642347	32642547	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271349)	promoter-TSS (NM_001271349)	-108.0	NM_001271348	103583.0	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-7906464-2	chr17	7906364	7906564	+	664.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19536.0	NM_145968	72536.0	Mm.119680	NM_145968	ENSMUSG00000033450	Tagap	2610315E15Rik|TRD|Tcd-1|Tcd1|Tcd1a|tcs-1|tcs1	T cell activation Rho GTPase activating protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-57393576-4	chr19	57393474	57393674	+	887.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	32565.0	NM_145505	226252.0	Mm.358870	NM_145505	ENSMUSG00000033478	Fam160b1	AI450540|mKIAA1600	family with sequence similarity 160, member B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167824143-2	chr2	167824043	167824243	+	577.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1L|LTR|ERVL-MaLR	-108184.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-66116157-2	chr17	66116057	66116257	+	610.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026833, intron 4 of 10)	intron (NM_026833, intron 4 of 10)	4512.0	NM_001037757	68767.0	Mm.296545	NM_026833	ENSMUSG00000024101	Washc1	1110049F14Rik|ORF19|Wash|Wash1	WASH complex subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-105903444-2	chr3	105903344	105903544	+	780.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009631)	promoter-TSS (NM_009631)	-977.0	NM_009631	11542.0	Mm.235024	NM_009631	ENSMUSG00000000562	Adora3	A3AR|A3R|AA3R|ARA3|Gpcr2	adenosine A3 receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-81828205-2	chr7	81828105	81828305	+	705.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_146193, intron 1 of 7)	intron (NM_146193, intron 1 of 7)	1226.0	NM_146193	83962.0	Mm.439893	NM_146193	ENSMUSG00000025103	Btbd1	1190005H08Rik	BTB (POZ) domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115696322-2	chr11	115696222	115696422	+	716.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001313936, intron 2 of 5)	intron (NM_001313936, intron 2 of 5)	3212.0	NM_001313937	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-104121586-2	chr8	104121486	104121686	+	790.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009868, intron 2 of 11)	RCHARR1|DNA|hAT-Charlie	-15713.0	NR_131138	546096.0	Mm.252264	NR_131138	ENSMUSG00000110053	Gm29682	Gm45664	predicted gene, 29682	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90612368-4	chr2	90612262	90612462	+	921.462524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31715.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128189955-2	chr2	128189855	128190055	+	704.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	62380.0	NM_001284410	12125.0	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-75704629-4	chr2	75704541	75704741	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010902)	promoter-TSS (NM_010902)	22.0	NR_132727	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	6.45165489373843	6.30037400023305	7.07312731797416	6.51963206278881	6.27825837541644	6.82794484480161	6.36885612571807	6.59715412220856	-0.094850311573767	0.669618065526654	0.993577811443337
Merged-chr18-80317764-2	chr18	80317664	80317864	+	561.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001190373, intron 3 of 3)	B3|SINE|B2	46490.0	NM_001190373	240444.0	Mm.279568	NM_001190373	ENSMUSG00000059852	Kcng2	AA591524	potassium voltage-gated channel, subfamily G, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-20496644-2	chr17	20496544	20496744	+	573.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	-5655.0	NM_134194	171228.0	Mm.377186	NM_134194	ENSMUSG00000043537	Vmn1r225	V1re5	vomeronasal 1 receptor 225	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-6728015-2	chr18	6727915	6728115	+	620.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-37152.0	NM_181070	19330.0	Mm.132802	NM_181070	ENSMUSG00000073639	Rab18	AA959686	RAB18, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-64602899-4	chr17	64602800	64603000	+	898.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008549, intron 1 of 21)	intron (NM_008549, intron 1 of 21)	1251.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-79254725-4	chr11	79254617	79254817	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019653)	promoter-TSS (NM_019653)	-22.0	NM_019653	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-34242549-7	chr5	34242450	34242650	+	970.0476070000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001015039, intron 2 of 12)	intron (NM_001015039, intron 2 of 12)	45774.0	NM_001015039	231125.0	Mm.113388	NM_001015039	ENSMUSG00000037224	Zfyve28	9630058O20Rik|Gm146|mKIAA1643	zinc finger, FYVE domain containing 28	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-50732766-4	chr16	50732649	50732849	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028300)	promoter-TSS (NR_028300)	24.0	NR_028300	68190.0	Mm.139089	NR_028300		Dubr	5330426P16Rik|Dum	Dppa2 upstream binding RNA	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123833216-2	chr5	123833119	123833319	+	576.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	32297.0	NM_030701	80885.0	Mm.440567	NM_030701	ENSMUSG00000045502	Hcar2	Gpr109a|Gpr109b|HM74|Niacr1|PUMA-G|Pumag|mHM74b	hydroxycarboxylic acid receptor 2	protein-coding	0.1141841757896	0.266999921637876	-0.16654259583792	-0.34379218579767	-0.348266316549667	-0.335572765958201	-0.339712753423607	-0.343238418185317	-3.58931093344327	0.140605800236549	1
Merged-chr16-78376882-4	chr16	78376787	78376987	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009770)	promoter-TSS (NM_009770)	-77.0	NM_009770	12228.0	Mm.392910	NM_009770	ENSMUSG00000022863	Btg3	ANA|tob5	B cell translocation gene 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-24575743-1	chr4	24575643	24575843	+	652.0	f0_balb.idr	intron (NR_149739, intron 14 of 24)	L2|LINE|L2	79292.0	NM_199467	212377.0	Mm.120919	NM_199467	ENSMUSG00000045751	Mms22l	F730047E07Rik|Gm134	MMS22-like, DNA repair protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-83025499-4	chr17	83025409	83025609	+	782.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52716.0	NR_045094	100503434.0	Mm.187281	NR_045094		Gm19689	-	predicted gene, 19689	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-88867580-4	chr4	88867499	88867699	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12602.0	NM_177348	230405.0	Mm.246593	NM_177348	ENSMUSG00000045364	Ifne	Ifn-tau-1|Ifne1|Ifnt1|Infe1	interferon epsilon	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-41785061-2	chr18	41784961	41785161	+	550.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	166133.0	NM_029942	77619.0	Mm.30649	NM_029942	ENSMUSG00000056671	Prelid2	1700003A01Rik|C330008K14Rik	PRELI domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-18089224-4	chr16	18089130	18089330	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011172)	promoter-TSS (NM_011172)	-40.0	NM_011172	19125.0	Mm.28456	NM_011172	ENSMUSG00000003526	Prodh	Pro-1|Pro1|Ym24d07	proline dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-35629996-2	chr2	35629896	35630096	+	584.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290641, intron 1 of 15)	intron (NM_001290641, intron 1 of 15)	8015.0	NM_001114124	69601.0	Mm.29629	NM_001001602	ENSMUSG00000026883	Dab2ip	2310011D08Rik|AI480459|Aip1|mKIAA1743	disabled 2 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-35751031-4	chr3	35750949	35751149	+	789.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3014.0	NR_151626	76295.0	Mm.239416	NM_029570	ENSMUSG00000037400	Atp11b	1110019I14Rik|ATPIF|ATPIR|mKIAA0956	ATPase, class VI, type 11B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81956754-2	chr15	81956654	81956854	+	696.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_013872, intron 2 of 7)	intron (NM_013872, intron 2 of 7)	4176.0	NM_001282040	29858.0	Mm.18939	NM_013872	ENSMUSG00000022474	Pmm1	C77612	phosphomannomutase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-122023552-2	chr14	122023452	122023652	+	743.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11122.0	NM_001037744	223262.0	Mm.297637	NM_001037744	ENSMUSG00000071229	Timm8a2	-	translocase of inner mitochondrial membrane 8A2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135954435-3	chr4	135954290	135954490	+	756.722229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357530, intron 5 of 9)	B3|SINE|B2	6984.0	NM_001357530	15356.0	Mm.482102	NM_008254	ENSMUSG00000028672	Hmgcl	AW476067|HL	3-hydroxy-3-methylglutaryl-Coenzyme A lyase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-79520123-4	chr11	79520028	79520228	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077496, intron 1 of 1)	intron (NM_001077496, intron 1 of 1)	3634.0	NM_001077496	216984.0	Mm.439665	NM_001077496	ENSMUSG00000093938	Evi2b	Evi-2|Evi2	ecotropic viral integration site 2b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-90362966-2	chr6	90362866	90363066	+	578.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144940, intron 19 of 19)	intron (NM_144940, intron 19 of 19)	-6528.0	NM_173002	80292.0	Mm.100116	NM_030260	ENSMUSG00000034430	Zxdc	A930012H20|B930086F11Rik|BC003332	ZXD family zinc finger C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-120325224-3	chr14	120325130	120325330	+	747.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_207515, exon 2 of 8)	5' UTR (NM_207515, exon 2 of 8)	18778.0	NM_001360376	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171103576-2	chr1	171103482	171103682	+	861.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2C_Mm|LTR|ERVL	-18079.0	NM_001081275	75472.0	Mm.32760	NM_029301	ENSMUSG00000026649	Cfap126	1700009P17Rik|AV282292|Flattop|Fltp	cilia and flagella associated protein 126	protein-coding	0.764989596321906	2.09036558108496	0.808719947291078	1.84769710614295	1.99193320105524	1.64803046192968	0.813230688704938	0.795501925240554	-0.288170525267807	0.844998092484774	0.998431161219273
Merged-chr1-23867560-4	chr1	23867455	23867655	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290683, intron 4 of 9)	MTD|LTR|ERVL-MaLR	42181.0	NR_110972	98366.0	Mm.329963	NM_028534	ENSMUSG00000026155	Smap1	1700056O10Rik|4921514B13Rik|4921525H11Rik|AI462175	small ArfGAP 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-103315535-4	chr11	103315436	103315636	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29166.0	NM_133715	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-12314211-3	chr17	12314154	12314354	+	928.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357722, intron 1 of 25)	intron (NM_001357722, intron 1 of 25)	4406.0	NM_011948	26407.0	Mm.28587	NM_011948	ENSMUSG00000014426	Map3k4	D17Rp17|D17Rp17e|MAPKKK4|MEKK 4|MTK1|Mek4b|Mekk4|RP17|Rp17a|Tas|mKIAA0213	mitogen-activated protein kinase kinase kinase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-111528309-2	chr8	111528209	111528409	+	926.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6202.0	NM_176923	319481.0	Mm.247294	NM_176923	ENSMUSG00000031959	Wdr59	5430401O09Rik|Cdw12	WD repeat domain 59	protein-coding	-0.0937779016487682	-0.0719071661104309	-0.0789897019682585	0.814103220689335	-0.0923900531307111	-0.0703212145392541	-0.0774209231287954	0.823999795812423	0.028149547091201	0.990511584420544	1
Merged-chr1-155384093-4	chr1	155383985	155384185	+	974.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011273, intron 2 of 14)	intron (NM_011273, intron 2 of 14)	33359.0	NM_011273	19775.0	Mm.266215	NM_011273	ENSMUSG00000026469	Xpr1	Rmc-1|Rmc1|Sxv|Syg1|XR	xenotropic and polytropic retrovirus receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32776746-2	chr2	32776646	32776846	+	799.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_025619)	TTS (NM_025619)	925.0	NM_178595	329384.0	Mm.268037	NM_178595	ENSMUSG00000053746	Ptrh1	2210013M04Rik|AW046744	peptidyl-tRNA hydrolase 1 homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-73446965-2	chr14	73446865	73447065	+	592.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-61676.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-36841069-4	chr3	36840910	36841110	+	994.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22096.0	NM_172679	229227.0	Mm.207907	NM_172679	ENSMUSG00000037270	4932438A13Rik	4732443H21|B830039D19Rik|D630029K19Rik|FSA|Kiaa1109|Tweek	RIKEN cDNA 4932438A13 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-16169047-4	chr4	16168953	16169153	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045765, intron 1 of 6)	intron (NR_045765, intron 1 of 6)	4943.0	NR_045765	100415915.0	Mm.387180	NR_045765	ENSMUSG00000085112	A530072M11Rik	-	RIKEN cDNA gene A530072M11	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-55331167-2	chr13	55331064	55331264	+	702.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1434.0	NM_016662	17121.0	Mm.20350	NM_016662	ENSMUSG00000021485	Mxd3	4631412E13Rik|Mad3|bHLHc13	Max dimerization protein 3	protein-coding	-0.424791934979425	-0.412071848997443	-0.416239801803867	-0.419455061815289	0.151275471625234	-0.411132238994513	-0.415320585958171	0.222948846316223	3.62951200831608	0.169935028810536	1
Merged-chr2-166071944-2	chr2	166071844	166072044	+	707.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008679, exon 23 of 23)	3' UTR (NM_008679, exon 23 of 23)	79307.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-18146122-2	chr2	18146022	18146222	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010804, intron 8 of 22)	B1_Mus2|SINE|Alu	81537.0	NM_001252561	17354.0	Mm.209175	NM_010804	ENSMUSG00000026743	Mllt10	Af10|B130021D15Rik|D630001B22Rik|mKIAA4140	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-120127668-4	chr9	120127564	120127764	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011029)	promoter-TSS (NM_011029)	-102.0	NM_011029	16785.0	Mm.4071	NM_011029	ENSMUSG00000032518	Rpsa	67kDa|67lr|AL022858|Lamr|Lamr1|Lamrl1|MLR|P40|P40-3|P40-8	ribosomal protein SA	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140344491-2	chr5	140344391	140344591	+	589.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172277, intron 9 of 10)	intron (NM_172277, intron 9 of 10)	12535.0	NM_001356584	17766.0	Mm.118846	NM_008637	ENSMUSG00000036639	Nudt1	Mth1	nudix (nucleoside diphosphate linked moiety X)-type motif 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36306375-2	chr1	36306275	36306475	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1358.0	NM_001172206	214855.0	Mm.34316	NM_145996	ENSMUSG00000037447	Arid5a	D430024K22Rik|Mrf1	AT rich interactive domain 5A (MRF1-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-62373188-2	chr4	62373088	62373288	+	650.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175090, intron 1 of 4)	intron (NM_175090, intron 1 of 4)	12487.0	NM_175090	20529.0	Mm.248637	NM_175090	ENSMUSG00000066150	Slc31a1	4930445G01Rik|AI787263|AU016967|Ctr1	solute carrier family 31, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-88910438-2	chr16	88910338	88910538	+	727.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A2|LTR|ERVL-MaLR	-13989.0	NM_010676	16704.0	Mm.3503	NM_010676	ENSMUSG00000051802	Krtap19-5	Krtap8-2	keratin associated protein 19-5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-125292723-3	chr5	125292575	125292775	+	749.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205083, intron 7 of 10)	intron (NM_001205083, intron 7 of 10)	48419.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	1.64973740958622	0.786629443165388	1.73252897235818	1.11851941710374	1.19889829241003	0.78958930787781	0.776321174405571	1.49782951444857	-1.07368459168584	0.456443548873972	0.919264728457769
Merged-chr19-16015354-4	chr19	16015235	16015435	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	30260.0	NR_045355	100502653.0	Mm.149980	NR_045355	ENSMUSG00000097557	C130060C02Rik	-	RIKEN cDNA C130060C02 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-43495107-1	chr19	43495007	43495207	+	912.0	f1_c57bl6.idr	3' UTR (NM_031396, exon 11 of 11)	3' UTR (NM_031396, exon 11 of 11)	29498.0	NM_010324	14718.0	Mm.19039	NM_010324	ENSMUSG00000025190	Got1	AI789014|Got-1|cAspAT|cCAT	glutamic-oxaloacetic transaminase 1, soluble	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127380587-4	chr10	127380484	127380684	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359244)	promoter-TSS (NM_001359244)	-84.0	NM_001359244	71750.0	Mm.29342	NM_027900	ENSMUSG00000025404	R3hdm2	1300003K24Rik|AU041262|mKIAA1002	R3H domain containing 2	protein-coding	5.82615607420164	5.93738095665261	5.6035398200225	6.1660619621502	4.81204327995927	5.60345810583555	5.35044852594894	4.27805100163456	-0.922145620107311	0.00332037925590185	0.0488608875457609
Merged-chr17-35168960-4	chr17	35168859	35169059	+	820.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-4082.0	NM_020027	53761.0	Mm.272462	NM_020027	ENSMUSG00000024393	Prrc2a	3110039B05Rik|Bat-2|Bat2|D17H6S51E|G2|Wbp12|mKIAA4178	proline-rich coiled-coil 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-83739706-2	chr8	83739605	83739805	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011925, intron 1 of 19)	B1_Mur1|SINE|Alu	1606.0	NM_001163029	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	1.59815731058227	1.92727548104284	1.38113624567933	1.35143431184778	2.1155196747456	2.28732558626809	1.57773457643489	2.04261342679907	1.3588776962959	0.185265472764458	0.660896474398802
Merged-chr1-133685966-4	chr1	133685865	133686065	+	882.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159649, intron 2 of 5)	intron (NM_001159649, intron 2 of 5)	4051.0	NM_172842	240754.0	Mm.36534	NM_172842	ENSMUSG00000051998	Lax1	A530029E09|E430019B13Rik	lymphocyte transmembrane adaptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-40415249-4	chr9	40415136	40415336	+	972.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357617, intron 1 of 20)	intron (NM_001357617, intron 1 of 20)	-38819.0	NM_001357621	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	6.04958096736033	6.19706334008393	6.26913672663592	5.63695466903453	4.06090136811559	4.62856640028448	2.32743989133491	5.05231945556051	-2.00651808864116	0.00489157777483136	0.0658179841190192
Merged-chr2-119972394-4	chr2	119972311	119972511	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011941)	promoter-TSS (NM_011941)	-288.0	NM_001355293	26390.0	Mm.330501	NM_011941	ENSMUSG00000033902	Mapkbp1	2810483F24Rik|AW123212|JNKBP-1|Jnkbp1|mKIAA0596	mitogen-activated protein kinase binding protein 1	protein-coding	1.52302895578387	0.995806612020209	2.44268350944409	0.933870886867987	1.53854903831362	3.30888156887318	1.49914780692479	1.63387810611917	1.41886482033479	0.216807809321681	0.707538695710375
Merged-chr17-73948294-4	chr17	73948194	73948394	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011723, intron 1 of 35)	intron (NM_011723, intron 1 of 35)	1902.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-34912834-4	chr7	34912741	34912941	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008820, intron 1 of 14)	intron (NM_008820, intron 1 of 14)	434.0	NM_008820	18624.0	Mm.69751	NM_008820	ENSMUSG00000063931	Pepd	Pep-4|Pep4|dal	peptidase D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-17192347-2	chr11	17192247	17192447	+	543.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_024459, intron 2 of 5)	intron (NM_024459, intron 2 of 5)	19242.0	NM_025443	66249.0	Mm.27831	NM_025443	ENSMUSG00000020116	Pno1	1810003N24Rik|AA407421|AU015468|AU019495|AU042323|Emi3|Imi3	partner of NOB1 homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-30362545-3	chr14	30362441	30362641	+	830.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028981, intron 1 of 46)	B4|SINE|B4	-9055.0	NM_001083616	12289.0	Mm.9772	NM_028981	ENSMUSG00000015968	Cacna1d	8430418G19Rik|C79217|Cach3|Cacn4|Cacnl1a2|Cav1.3|Cchl1a|Cchl1a2|D-LTCC	calcium channel, voltage-dependent, L type, alpha 1D subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-17728679-3	chr10	17728561	17728761	+	690.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	AmnSINE1|SINE|Deu	5433.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-13302989-4	chr7	13302904	13303104	+	921.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083188, intron 19 of 28)	intron (NM_001083188, intron 19 of 28)	-22663.0	NM_001168504	232889.0	Mm.223639	NM_001004762	ENSMUSG00000033847	Pla2g4c	D7Ertd445e	phospholipase A2, group IVC (cytosolic, calcium-independent)	protein-coding	0.854441041796077	0.582028953253688	1.66668854844536	1.0425140928192	1.09631019718674	0.584439061390954	0.778027076418884	0.754254095932643	-1.33717782666594	0.375300169599306	0.868350035427406
Merged-chr5-34372723-4	chr5	34372624	34372824	+	844.7333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001243123, intron 1 of 20)	intron (NM_001243123, intron 1 of 20)	2791.0	NM_001243123	231128.0	Mm.286885	NM_001030306	ENSMUSG00000037210	Fam193a	-	family with sequence similarity 193, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-66231788-3	chr14	66231702	66231902	+	696.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	-17978.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-44985677-2	chr2	44985577	44985777	+	798.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001355289, exon 11 of 11)	3' UTR (NM_001355289, exon 11 of 11)	37500.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129016418-3	chr4	129016303	129016503	+	909.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23179.0	NM_001033966	11637.0	Mm.29460	NM_016895	ENSMUSG00000028792	Ak2	Ak-2|D4Ertd220e	adenylate kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125418953-4	chr6	125418862	125419062	+	961.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38458.0	NM_198604	213522.0	Mm.333396	NM_198604	ENSMUSG00000038167	Plekhg6	BC026778|Gm155	pleckstrin homology domain containing, family G (with RhoGef domain) member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-123851976-6	chr9	123851888	123852088	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_148925)	promoter-TSS (NM_148925)	-89.0	NM_001110253	17281.0	Mm.252941	NM_148925	ENSMUSG00000025241	Fyco1	2810409M01Rik|Mem2|RUFY3|ZFYVE7	FYVE and coiled-coil domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-27352629-1	chr14	27352529	27352729	+	541.0	f0_balb.idr	intron (NM_001289687, intron 1 of 9)	intron (NM_001289687, intron 1 of 9)	-8760.0	NM_001289688	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-47277460-3	chr13	47277361	47277561	+	805.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	83458.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	2.95559428418503	1.92216885884875	2.8262142823499	2.63230892811145	3.30931767445202	3.41393468554089	2.29068289233229	3.34437294185418	0.931143965358658	0.191164184737033	0.669546561020494
Merged-chr6-123259946-3	chr6	123259842	123260042	+	875.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2165.0	NM_001163161	17474.0	Mm.441101	NM_010819	ENSMUSG00000030144	Clec4d	Clecsf8|Mpcl|mcl	C-type lectin domain family 4, member d	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-26603683-2	chr19	26603583	26603783	+	738.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1477.0	NM_011416	67155.0	Mm.491146	NM_011416	ENSMUSG00000024921	Smarca2	2610209L14Rik|SNF2alpha|Snf2l2|brahma|brm	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132573540-4	chr4	132573462	132573662	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081211, intron 1 of 1)	intron (NM_001081211, intron 1 of 1)	9495.0	NM_001081211	19204.0	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-114649326-2	chr6	114649226	114649426	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253718, intron 2 of 19)	intron (NM_001253718, intron 2 of 19)	6229.0	NM_001253718	74244.0	Mm.275332	NM_028835	ENSMUSG00000030314	Atg7	1810013K23Rik|Agp7|Apg7l|Atg7l|Gm21553	autophagy related 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-98249893-4	chr12	98249811	98250011	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008079, intron 5 of 16)	intron (NM_008079, intron 5 of 16)	9548.0	NM_008079	14420.0	Mm.5120	NM_008079	ENSMUSG00000021003	Galc	2310068B06Rik|A930008M05Rik|AW212969|AW413532|Gacy|twi|twitcher	galactosylceramidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120619799-7	chr8	120619710	120619910	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001308449, intron 2 of 3)	intron (NM_001308449, intron 2 of 3)	14572.0	NM_197988	68918.0	Mm.473736	NM_197988	ENSMUSG00000043687	1190005I06Rik	-	RIKEN cDNA 1190005I06 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28753300-2	chr7	28753200	28753400	+	617.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023637, intron 15 of 15)	intron (NM_023637, intron 15 of 15)	-2874.0	NM_001195091	100504112.0	Mm.379654	NM_001195091	ENSMUSG00000096257	Ccer2	EG624918|Gm6537	coiled-coil glutamate-rich protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-41039038-4	chr3	41038936	41039136	+	941.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44010.0	NM_027558	70804.0	Mm.40321	NM_027558	ENSMUSG00000049940	Pgrmc2	4631434O19Rik|5730409G06Rik|DG6|PMBP	progesterone receptor membrane component 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-14692355-4	chr19	14692253	14692453	+	841.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-94170.0	NM_001302947	21888.0	Mm.103638	NM_011600	ENSMUSG00000024642	Tle4	5730411M05Rik|AA792082|Bce-1|Bce1|ESTM13|ESTM14|Grg4|X83332|X83333|grg-4	transducin-like enhancer of split 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-95494426-2	chr10	95494326	95494526	+	738.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026065, intron 3 of 5)	RMER16|LTR|ERVK	7523.0	NM_001359476	67270.0	Mm.30008	NM_026065	ENSMUSG00000062981	Mrpl42	2700009F22Rik|2900055D03Rik|D10Ertd322e|HSPC204|L31mt|L42mt|MRP-L31|MRP-L42|MRP-S32|PTD007|Rpml31|S32mt	mitochondrial ribosomal protein L42	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-17749747-3	chr6	17749663	17749863	+	850.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022332, intron 1 of 15)	intron (NM_022332, intron 1 of 15)	593.0	NM_001083315	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-66907118-3	chr13	66907011	66907211	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177750, intron 1 of 2)	intron (NM_001177750, intron 1 of 2)	1696.0	NM_001177750	100038538.0	Mm.405005	NM_001177750	ENSMUSG00000074826	Gm10767	-	predicted gene 10767	protein-coding	1.95565677792067	2.05184073383991	2.30831606045575	1.42478008076729	1.02267525796897	0.875679289130978	0.853997842131814	0.834848238743352	-4.60250282323173	0.00113486925773925	0.0214288897738764
Merged-chr17-86166834-6	chr17	86166731	86166931	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011104)	promoter-TSS (NM_011104)	-954.0	NM_011104	18754.0	Mm.24614	NM_011104	ENSMUSG00000045038	Prkce	5830406C15Rik|PKC[e]|PKCepsilon|Pkce|R75156	protein kinase C, epsilon	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-95118687-2	chr6	95118574	95118774	+	783.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001008785, exon 2 of 4)	exon (NM_001008785, exon 2 of 4)	794.0	NM_001102670	243574.0	Mm.333275	NM_001008785	ENSMUSG00000030031	Kbtbd8	AU040152|SSEC-51|SSEC51|Takrp|mKIAA1842	kelch repeat and BTB (POZ) domain containing 8	protein-coding	-1.06630716392371	-1.04553885707013	-0.481827298564042	-1.06284290915882	-1.06579218732413	-1.04301765156829	-1.05453942141126	-0.891939885986853	-1.77235952964942	0.578704272452977	1
Merged-chr1-131679836-4	chr1	131679732	131679932	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8863.0	NM_001311096	226421.0	Mm.44508	NM_145509	ENSMUSG00000052688	Rab7b	5430435G22Rik	RAB7B, member RAS oncogene family	protein-coding	7.16890815637347	6.73797322547873	7.67646922590741	6.93433932208201	7.25885845238902	6.6521295389555	7.5307793915986	6.92896261228674	-0.0440183891050789	0.843761748663591	0.998431161219273
Merged-chr11-69975399-2	chr11	69975299	69975499	+	778.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_018740, intron 4 of 8)	MIR|SINE|MIR	4931.0	NM_001253700	54351.0	Mm.13430	NM_018740	ENSMUSG00000018565	Elp5	Derp6|Rai12	elongator acetyltransferase complex subunit 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-74990152-4	chr9	74989993	74990193	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153584, intron 1 of 11)	intron (NM_153584, intron 1 of 11)	13982.0	NM_153584	235493.0	Mm.208955	NM_153584	ENSMUSG00000034858	Fam214a	6330415I01Rik|AI553555|C130047D21Rik|Kiaa1370|mKIAA1370	family with sequence similarity 214, member A	protein-coding	0.924400371822963	0.651408866769027	1.01003151707185	1.60441529119394	1.43971832630372	0.653987269032091	1.1644727648556	0.632439964539341	-0.318055176490669	0.836611862077524	0.998431161219273
Merged-chr4-132588675-4	chr4	132588583	132588783	+	798.200012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24616.0	NM_001081211	19204.0	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	0.948264348131358	0.600270624448849	0.579864843473789	0.814829120958761	0.77000768309755	2.21845320568375	0.584436855520591	2.11079883067003	3.24348449086396	0.0322287122180782	0.249471025285485
Merged-chr16-20371914-4	chr16	20371796	20371996	+	977.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013790, intron 17 of 29)	intron (NM_013790, intron 17 of 29)	-46492.0	NM_183158	224044.0	Mm.276400	NM_183158	ENSMUSG00000022818	Cyp2ab1	EG224044|F730023N20	cytochrome P450, family 2, subfamily ab, polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-86819389-4	chr12	86819326	86819526	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	65388.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44882205-3	chr9	44882118	44882318	+	915.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357549)	promoter-TSS (NM_001357549)	-944.0	NM_001081049	214162.0	Mm.2389	NM_001081049	ENSMUSG00000002028	Kmt2a	6430520K01|ALL-1|All1|Cxxc7|HRX|HTRX1|Mll|Mll1|mKIAA4050	lysine (K)-specific methyltransferase 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28794610-2	chr7	28794510	28794710	+	683.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358916, intron 4 of 11)	intron (NM_001358916, intron 4 of 11)	5641.0	NM_177158	320435.0	Mm.74632	NM_177158	ENSMUSG00000051735	Rinl	5830482F20Rik|9930116N10Rik	Ras and Rab interactor-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83369444-2	chr6	83369344	83369544	+	626.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_183138, exon 11 of 11)	exon (NM_183138, exon 11 of 11)	19960.0	NM_175277	78653.0	Mm.391470	NM_175277	ENSMUSG00000045160	Bola3	1810056O20Rik	bolA-like 3 (E. coli)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-75083995-4	chr8	75083900	75084100	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9618.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-93101635-2	chr1	93101535	93101735	+	875.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001294149, intron 1 of 47)	CpG	239.0	NM_001294149	16560.0	Mm.276408	NM_008440	ENSMUSG00000014602	Kif1a	ATSV|C630002N23Rik|Gm1626|Kns1	kinesin family member 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-50364507-4	chr16	50364382	50364582	+	823.783325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027444, intron 2 of 16)	intron (NM_027444, intron 2 of 16)	67907.0	NM_027444	70508.0	Mm.28940	NM_027444	ENSMUSG00000022641	Bbx	5530401J07Rik|5730403O13Rik	bobby sox HMG box containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-62496520-2	chr15	62496420	62496620	+	705.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-277069.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-113507158-1	chr13	113507058	113507258	+	547.0	f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-4314.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-21945032-4	chr10	21944956	21945156	+	956.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161845, intron 2 of 13)	PB1D9|SINE|Alu	-33616.0	NM_001161847	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43218162-4	chr4	43218054	43218254	+	932.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081413, intron 11 of 39)	intron (NM_001081413, intron 11 of 39)	-49005.0	NM_177195	320571.0	Mm.74465	NM_177195	ENSMUSG00000028457	Atp8b5	4930417M19Rik|Feta	ATPase, class I, type 8B, member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-99233746-1	chr5	99233646	99233846	+	549.0	f1_c57bl6.idr	intron (NM_181318, intron 6 of 13)	intron (NM_181318, intron 6 of 13)	19181.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-103762377-2	chr2	103762277	103762477	+	718.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001111290)	TTS (NM_001111290)	-1107.0	NM_153126	98956.0	Mm.288005	NM_153126	ENSMUSG00000027185	Nat10	AI429152	N-acetyltransferase 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-79794969-1	chr5	79794869	79795069	+	829.333313	f0_balb.idr	Intergenic	Intergenic	-1225602.0	NM_001347367	319387.0	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-120626492-2	chr5	120626392	120626592	+	573.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_028041, exon 18 of 20)	exon (NM_028041, exon 18 of 20)	7743.0	NM_001195094	546886.0	Mm.464847	NM_001195094	ENSMUSG00000094282	Cfap73	Ccdc42b|Gm5988	cilia and flagella associated protein 73	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-22307504-2	chr10	22307404	22307604	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_015465, intron 2 of 2)	intron (NR_015465, intron 2 of 2)	784.0	NR_015465	606736.0	Mm.387042	NR_015465	ENSMUSG00000097352	C920009B18Rik	-	RIKEN cDNA C920009B18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-129747567-1	chr6	129747467	129747667	+	661.0	f0_balb.idr	Intergenic	Intergenic	-7083.0	NM_177155	320407.0	Mm.123265	NM_177155	ENSMUSG00000043932	Klri2	A530090P03Rik	killer cell lectin-like receptor family I member 2	protein-coding	1.94482941161103	1.20861439083322	1.83089904611419	2.76246357089054	2.07382757083032	1.91278883069941	2.86824757154299	1.15619791622148	0.198816719465795	0.854019240989996	0.998431161219273
Merged-chr18-35252790-2	chr18	35252690	35252890	+	636.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_009818, intron 17 of 17)	intron (NM_009818, intron 17 of 17)	-37766.0	NM_178005	107065.0	Mm.39900	NM_178005	ENSMUSG00000071862	Lrrtm2	AI851755|BB129880|C630011A14Rik|mKIAA0416	leucine rich repeat transmembrane neuronal 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125067612-2	chr6	125067512	125067712	+	669.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163269)	promoter-TSS (NM_001163269)	-308.0	NM_001163269	381810.0	Mm.333386	NM_001163268	ENSMUSG00000067714	Lpar5	GPR93|Gm1072|Gpr92|LPA5	lysophosphatidic acid receptor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-62228500-4	chr18	62228373	62228573	+	932.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48373.0	NM_001013754	225609.0	Mm.296917	NM_001013754	ENSMUSG00000054589	Gm9949	EG225609	predicted gene 9949	protein-coding	0.401160275487331	0.270833269571685	0.263361238743313	0.820073780068955	0.852977238196864	1.03882275780117	0.265013000419525	0.258580281949212	1.12363725771331	0.55717829034136	1
Merged-chr17-13905782-4	chr17	13905675	13905875	+	963.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010806)	TTS (NM_010806)	-42598.0	NM_001122977	635895.0	Mm.388844	NM_001122977	ENSMUSG00000067941	Gm7168	EG635895	predicted gene 7168	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-142949742-3	chr5	142949649	142949849	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10606.0	NM_007984	14086.0	Mm.289707	NM_007984	ENSMUSG00000029581	Fscn1	AI663989|Fan1|fascin-1	fascin actin-bundling protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-32725600-1	chr5	32725500	32725700	+	789.5	f1_balb.idr	Intergenic	RMER4A|LTR|ERVK	20742.0	NM_001347332	320951.0	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	-1.56355737717652	-1.81244775989375	-1.82128546162293	-1.82854501295842	-1.83962066705452	-1.81053259306168	-1.81928479966835	-1.82724555674025	-1.28500227969968	0.715751224811686	1
Merged-chr11-79460941-2	chr11	79460840	79461040	+	718.5	f0_balb.idr|f1_c57bl6.idr	intron (NM_010897, intron 30 of 57)	intron (NM_010897, intron 30 of 57)	23091.0	NR_045305	104522.0	Mm.436987	NR_045305	ENSMUSG00000091523	AU040972	AU040954	expressed sequence AU040972	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-127890782-4	chr2	127890690	127890890	+	842.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028765, intron 8 of 17)	intron (NM_028765, intron 8 of 17)	36162.0	NM_028765	74121.0	Mm.244835	NM_028765	ENSMUSG00000027380	Acoxl	1200014P05Rik|AV025673	acyl-Coenzyme A oxidase-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-81709600-2	chr17	81709500	81709700	+	914.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 1 of 8)	L2b|LINE|L2	28787.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78583518-3	chr15	78583403	78583603	+	888.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1914.0	NR_155437	102640742.0	Mm.253544	NR_155437	ENSMUSG00000116097	Gm36738	-	predicted gene, 36738	ncRNA	2.82720391152529	1.40897715937487	1.6431732943498	1.81552089036971	3.10470425554013	2.32978371394582	2.74698201264294	3.42301374847691	1.78457986834396	0.0418476724078155	0.292706008676042
Merged-chr10-20149267-6	chr10	20149063	20149263	+	839.211121	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198635, intron 1 of 17)	CpG	243.0	NM_001198635	17761.0	Mm.20928	NM_008635	ENSMUSG00000019996	Map7	E-MAP-115|MAP-7|Mtap7|R75000|mshi|mste|ste	microtubule-associated protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-42950272-4	chr4	42950175	42950375	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355440)	promoter-TSS (NM_001355440)	-121.0	NM_001355440	56323.0	Mm.20437	NM_019874	ENSMUSG00000036052	Dnajb5	1110058L06Rik|AI462558|Hsc40|Hsp40-3	DnaJ heat shock protein family (Hsp40) member B5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-148595534-4	chr5	148595451	148595651	+	951.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42763.0	NM_001359199	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	-0.499940950918087	-0.487518524828365	0.0891561271406926	-0.494726023626598	-0.499164980458282	-0.486601867615524	0.100277611126392	-0.494177430718284	0.0410194320726077	0.98816738256539	1
Merged-chr16-50074149-2	chr16	50074049	50074249	+	766.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1297.0	NR_045935	224180.0	Mm.146439	NM_175010		Gm4827	B130050K08|EG224180	predicted gene 4827	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-45239034-4	chr2	45238912	45239112	+	998.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-121570.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-59186523-3	chr1	59186432	59186632	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159948, intron 15 of 33)	intron (NM_001159948, intron 15 of 33)	-23143.0	NM_001164682	227157.0	Mm.474049	NM_145143	ENSMUSG00000079550	Mpp4	Dlg6	membrane protein, palmitoylated 4 (MAGUK p55 subfamily member 4)	protein-coding	2.23643052158082	1.89815080634403	1.81003461996962	2.39674136002533	3.56322835847659	3.86459382394978	5.14661747861672	4.46485229213456	3.62959816955578	1.0031038027969e-07	9.01781831904765e-06
Merged-chr18-4266207-4	chr18	4266093	4266293	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	86760.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19311366-2	chr7	19311266	19311466	+	724.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1321.0	NM_001347586	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152530554-2	chr1	152530454	152530654	+	791.599976	f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 14 of 17)	L2a|LINE|L2	94663.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-20316978-4	chr16	20316863	20317063	+	994.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183158, intron 2 of 8)	intron (NM_183158, intron 2 of 8)	8441.0	NM_183158	224044.0	Mm.276400	NM_183158	ENSMUSG00000022818	Cyp2ab1	EG224044|F730023N20	cytochrome P450, family 2, subfamily ab, polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-20643851-2	chr18	20643751	20643951	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_155534, intron 1 of 2)	intron (NR_155534, intron 1 of 2)	-21399.0	NM_013697	22139.0	Mm.2108	NM_013697	ENSMUSG00000061808	Ttr	AA408768|AI787086|D17860|prealbumin	transthyretin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-12408873-4	chr13	12408760	12408960	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144835, intron 13 of 44)	intron (NM_144835, intron 13 of 44)	13485.0	NM_144835	217995.0	Mm.171186	NM_144835	ENSMUSG00000050244	Heatr1	AA517551|B130016L12Rik|BC019693	HEAT repeat containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-28699872-6	chr2	28699761	28699961	+	868.5347289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027283)	promoter-TSS (NM_027283)	-210.0	NM_027283	69987.0	Mm.239376	NM_027283	ENSMUSG00000026809	Spaca9	1700026L06Rik|MAST	sperm acrosome associated 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-123465815-4	chr7	123465722	123465922	+	943.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007474, intron 4 of 5)	intron (NM_007474, intron 4 of 5)	3528.0	NM_001109045	11833.0	Mm.273175	NM_007474	ENSMUSG00000030762	Aqp8	AI255744|AQP-8	aquaporin 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-39489367-5	chr18	39489287	39489487	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2142.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6486420-2	chr19	6486320	6486520	+	644.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205234, intron 11 of 22)	intron (NM_001205234, intron 11 of 22)	56650.0	NM_009203	20521.0	Mm.391146	NM_009203	ENSMUSG00000061742	Slc22a12	AI987855|OAT4L|Rst|Slc22al2|URAT1	solute carrier family 22 (organic anion/cation transporter), member 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-108703407-2	chr8	108703307	108703507	+	756.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-11237.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-66689765-4	chr7	66689672	66689872	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_003961)	promoter-TSS (NR_003961)	-117.0	NM_152815	72635.0	Mm.289796	NM_152815	ENSMUSG00000053091	Lins1	2700083B01Rik|AW547219|Lins|Lins2|Wins2	lines homolog 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-61517947-4	chr8	61517829	61518029	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293772, intron 18 of 21)	intron (NM_001293772, intron 18 of 21)	30195.0	NM_145595	234309.0	Mm.29059	NM_145595	ENSMUSG00000031641	Cbr4	A730083J17Rik|BC009118	carbonyl reductase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-145260743-1	chr7	145260643	145260843	+	829.0	f1_balb.idr	intron (NM_146206, intron 16 of 24)	intron (NM_146206, intron 16 of 24)	23268.0	NR_132644	233979.0	Mm.102235	NM_146206	ENSMUSG00000048677	Tpcn2	D830047E22Rik|Gm35086	two pore segment channel 2	protein-coding	-0.750677623601657	-0.743560887800206	-0.461759300429265	-0.747721216225711	-0.515112122466904	-0.743025624167558	-0.455539091204178	-0.747407581289906	0.845962240520592	0.765027046542336	1
Merged-chr15-78753174-1	chr15	78753074	78753274	+	606.0	f1_c57bl6.idr	Intergenic	Intergenic	20271.0	NM_008595	17305.0	Mm.149235	NM_008595	ENSMUSG00000018169	Mfng	AW546563	MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	-1.13662871952195	-1.24931081360406	-1.25923090265904	-1.2673795591711	-1.01023853375738	-1.24716108892321	-1.25698521193915	-1.10991631754114	1.14999623305615	0.715257220490019	1
Merged-chr2-26639160-2	chr2	26639060	26639260	+	791.75	f1_balb.idr|f1_c57bl6.idr	TTS (NR_028571)	TTS (NR_028571)	161.0	NR_028571	100306954.0	Mm.491822	NR_028571	ENSMUSG00000077192	Snora17	ACA17	small nucleolar RNA, H/ACA box 17	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-88459833-2	chr15	88459733	88459933	+	886.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-140469.0	NM_027306	70073.0	Mm.45306	NM_027306	ENSMUSG00000054117	Zdhhc25	1700030J15Rik	zinc finger, DHHC domain containing 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-57177442-2	chr16	57177342	57177542	+	627.549988	f1_balb.idr|f1_c57bl6.idr	intron (NM_026254, intron 15 of 17)	intron (NM_026254, intron 15 of 17)	-10110.0	NM_023175	52633.0	Mm.383203	NM_023175	ENSMUSG00000022751	Nit2	1190017B19Rik|D16Ertd502e	nitrilase family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-15307010-4	chr9	15306948	15307148	+	923.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199484)	promoter-TSS (NM_001199484)	-600.0	NM_001199484	70984.0	Mm.261842	NM_133732	ENSMUSG00000031938	4931406C07Rik	-	RIKEN cDNA 4931406C07 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70634259-4	chr8	70634128	70634328	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1772.0	NM_001330687	23886.0	Mm.31325	NM_011819	ENSMUSG00000038508	Gdf15	MIC-1|NAG-1|SBF	growth differentiation factor 15	protein-coding	-0.327312481432179	-0.297013184412064	0.144230813476232	-0.314204008728858	-0.325323400884256	-0.294897295256647	1.16208702440541	-0.312859229761505	2.846171169008	0.20143627492079	1
Merged-chr10-8948459-3	chr10	8948417	8948617	+	774.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62447.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	-0.998708004169574	-1.23656917697027	-1.2467819647641	-1.2551710527351	-1.26296550373295	-1.23435602325169	-0.926385977887582	-1.25366940999922	0.276530546718458	0.935641945642945	1
Merged-chr5-115280469-2	chr5	115280369	115280569	+	871.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026504, intron 1 of 6)	ID_B1|SINE|B4	767.0	NM_026504	52064.0	Mm.290142	NM_026504	ENSMUSG00000041733	Coq5	1810014G04Rik|D5Ertd33e	coenzyme Q5 methyltransferase	protein-coding	-2.05752322593321	-2.15521190974092	-2.16307242109104	-2.16952927915413	-2.17938029103484	-2.15350850414045	-2.16129297361887	-2.16837350464794	-0.683654500252594	0.846597994014493	1
Merged-chr5-24048006-3	chr5	24047912	24048112	+	931.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17322.0	NM_053090	84652.0	Mm.304976	NM_053090	ENSMUSG00000028995	Fam126a	AB030242|Drctnnb1a	family with sequence similarity 126, member A	protein-coding	0.907413121628687	0.746278428366428	0.0883197241354639	0.0830456519165351	0.0755477609150464	0.481636101452521	0.0898227733968927	0.0839688746432872	-2.36537968583311	0.279943228836192	1
Merged-chr5-147418569-4	chr5	147418477	147418677	+	902.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033625)	promoter-TSS (NR_033625)	-43.0	NR_033625	100039805.0	Mm.394705	NR_033625	ENSMUSG00000106820	D5Ertd605e	Gm2433	DNA segment, Chr 5, ERATO Doi 605, expressed	ncRNA	1.00825962898727	1.07665150990346	1.78108844112041	1.72860743785431	1.76332319611502	2.21392304752597	1.48992188007619	2.2344461569421	1.55638668265812	0.178514123153725	0.649048488672285
Merged-chr1-168432438-4	chr1	168432318	168432518	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291509)	promoter-TSS (NM_001291509)	-249.0	NM_008783	18514.0	Mm.43358	NM_008783	ENSMUSG00000052534	Pbx1	2310056B04Rik|D230003C07Rik|Pbx-1	pre B cell leukemia homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-86479291-4	chr1	86479196	86479396	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47261.0	NR_153834	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-13828095-3	chr9	13828005	13828205	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310721)	promoter-TSS (NM_001310721)	389.0	NM_176836	72826.0	Mm.246174	NM_176836	ENSMUSG00000037808	Fam76b	2810485I05Rik|C78303	family with sequence similarity 76, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-153974599-2	chr4	153974499	153974699	+	996.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177673)	promoter-TSS (NM_177673)	482.0	NM_007859	13368.0	Mm.388918	NM_007859	ENSMUSG00000029027	Dffb	40kDa|5730477D02Rik|CAD|CPAN|DFF40|Didff	DNA fragmentation factor, beta subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30819861-2	chr2	30819761	30819961	+	604.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356433, intron 2 of 3)	intron (NM_001356433, intron 2 of 3)	8439.0	NM_133346	72323.0	Mm.27656	NM_133346	ENSMUSG00000039483	Asb6	2510004M11Rik|AA409356	ankyrin repeat and SOCS box-containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-62265631-4	chr4	62265523	62265723	+	977.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20806.0	NM_025286	20530.0	Mm.292539	NM_025286	ENSMUSG00000066152	Slc31a2	AI604396|CTR2	solute carrier family 31, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-80661900-4	chr1	80661857	80662057	+	986.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175291, intron 1 of 55)	intron (NM_175291, intron 1 of 55)	3395.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-189658676-2	chr1	189658576	189658776	+	766.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081363, exon 12 of 18)	exon (NM_001081363, exon 12 of 18)	29410.0	NM_001081363	108000.0	Mm.129746	NM_001081363	ENSMUSG00000026605	Cenpf	6530404A22Rik|AI325968|CENF|Lek1|PRO1779|mitosin	centromere protein F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-145758790-1	chr6	145758690	145758890	+	577.0	f1_c57bl6.idr	Intergenic	Intergenic	-49593.0	NM_027760	71323.0	Mm.158669	NM_027760	ENSMUSG00000030259	Rassf8	5133400D11Rik|AA815821|AW123240|Hoj1|mHoj-1	Ras association (RalGDS/AF-6) domain family (N-terminal) member 8	protein-coding	1.91561959788016	2.58246483857554	1.4297192397653	2.70500162030695	1.93217042809533	1.70086814136653	1.1871378246086	1.90726201550902	-1.40326688687278	0.171059650060361	0.638755914366425
Merged-chr7-127410733-3	chr7	127410626	127410826	+	896.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3904.0	NM_001167832	233893.0	Mm.297097	NM_146203	ENSMUSG00000045757	Zfp764	8030466O12Rik	zinc finger protein 764	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-104460467-3	chr14	104460381	104460581	+	799.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7518.0	NM_011143	18996.0	Mm.246550	NM_011143	ENSMUSG00000048349	Pou4f1	Brn-3|Brn-3.0|Brn3|Brn3.0|Brn3a|E130119J07Rik	POU domain, class 4, transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141148559-4	chr4	141148456	141148656	+	907.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172518, intron 1 of 9)	CpG	634.0	NM_172518	213499.0	Mm.28865	NM_172518	ENSMUSG00000028920	Fbxo42	6720460I06Rik|mKIAA1332	F-box protein 42	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26099440-2	chr17	26099326	26099526	+	585.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-3956.0	NM_019731	56520.0	Mm.41787	NM_019731	ENSMUSG00000024177	Nme4	2610027N22Rik|2810024O08Rik|5730493H09Rik|NM23-M4|Nm23M4	NME/NM23 nucleoside diphosphate kinase 4	protein-coding	-0.78605344187212	-0.771476810222183	-0.776125072594536	-0.779793792917942	-0.785108350349756	-0.770427794756542	-0.775089708583571	0.224834994624535	4.12132139781461	0.115510450733118	1
Merged-chr2-180709470-3	chr2	180709370	180709570	+	890.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289651)	promoter-TSS (NM_001289651)	529.0	NM_177852	23856.0	Mm.253836	NM_011805	ENSMUSG00000038914	Dido1	6720461J16Rik|D130048F08Rik|DATF-1|DIO-1|Datf1|dido	death inducer-obliterator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-20059145-1	chr11	20059045	20059245	+	556.0	f1_c57bl6.idr	Intergenic	ORR1C2-int|LTR|ERVL-MaLR	53806.0	NM_146243	66713.0	Mm.259045	NM_146243	ENSMUSG00000020152	Actr2	4921510D23Rik|AA409782|Arp2|D6Ertd746e	ARP2 actin-related protein 2	protein-coding	1.90100889502243	1.93871768687443	3.0540476216011	0.830526284009364	1.41950893602993	0.889762250088026	1.37656391359864	0.834725807745865	-2.81135289457435	0.0260828179131495	0.215821827118598
Merged-chr10-93444576-4	chr10	93444470	93444670	+	848.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8826.0	NM_001313897	16993.0	Mm.271071	NM_008517	ENSMUSG00000015889	Lta4h	-	leukotriene A4 hydrolase	protein-coding	3.40704231851896	3.86592417724235	3.80084316590604	2.84795209643976	2.60362586464609	2.64231190797382	2.17719151033249	3.40239399345173	-1.23371737649241	0.058427786028503	0.357175565609704
Merged-chr2-42891063-1	chr2	42890963	42891163	+	545.0	f1_balb.idr	Intergenic	L1_Mus3|LINE|L1	-237465.0	NM_053011	94217.0	Mm.441398	NM_053011	ENSMUSG00000049252	Lrp1b	9630004P12Rik|LRP-DIT	low density lipoprotein-related protein 1B (deleted in tumors)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-26123343-3	chr8	26123240	26123440	+	675.200012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357292, intron 2 of 6)	intron (NM_001357292, intron 2 of 6)	3530.0	NM_001357294	77733.0	Mm.291906	NM_029965	ENSMUSG00000013878	Rnf170	6720407G21Rik|AI481227	ring finger protein 170	protein-coding	0.79528629408949	0.794230887432026	1.22326423900594	1.17130645301733	0.382190638128689	0.410013326975666	0.401049623025742	0.393333715744685	-4.49384591014316	0.0108065797382042	1
Merged-chr5-124425833-6	chr5	124425740	124425940	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359978)	promoter-TSS (NM_001359978)	117.0	NM_001081203	243272.0	Mm.23879	NM_145631	ENSMUSG00000038095	Sbno1	9330180L10Rik|AI849128|AW557836|BC021875|Sbno|mSno1|sno	strawberry notch 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-98322646-4	chr7	98322528	98322728	+	939.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1420.0	NM_001360615	66190.0	Mm.334041	NM_025408	ENSMUSG00000030760	Acer3	1110057L18Rik|5430429L08Rik|AV015045|Phca|aPHC	alkaline ceramidase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-84713950-3	chr10	84713817	84714017	+	844.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027423, intron 24 of 27)	intron (NM_027423, intron 24 of 27)	-42131.0	NM_001024918	71137.0	Mm.79070	NM_027689	ENSMUSG00000020037	Rfx4	4933412G19Rik|NYD-sp10	regulatory factor X, 4 (influences HLA class II expression)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-47242445-4	chr19	47242352	47242552	+	872.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163480, intron 3 of 5)	intron (NM_001163480, intron 3 of 5)	13609.0	NM_001163480	18011.0	Mm.313651	NM_021360	ENSMUSG00000006435	Neurl1a	2410129E16Rik|AI450910|AI481072|Neu1|Neur1|Neurl|Neurl1|Nlz|Rnf67	neuralized E3 ubiquitin protein ligase 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-130577751-4	chr2	130577493	130577693	+	761.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011025)	TTS (NM_011025)	1424.0	NM_011025	18429.0	Mm.16745	NM_011025	ENSMUSG00000027301	Oxt	OT|Oxy	oxytocin	protein-coding	-0.122359877019661	-0.105026760443944	0.589092810418156	0.058848121578407	-0.121271719677701	-0.103754705465942	0.601923662567612	-0.114295390397634	-0.202851638883324	0.929782641134458	1
Merged-chr18-14681408-2	chr18	14681308	14681508	+	551.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009280, intron 1 of 10)	B3A|SINE|B2	1506.0	NM_001161369	268996.0	Mm.31761	NM_009280	ENSMUSG00000037013	Ss18	D130059H17|Ssxt|Syt	SS18, nBAF chromatin remodeling complex subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-43600094-4	chr11	43599976	43600176	+	899.3875119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008375, intron 1 of 3)	intron (NM_008375, intron 1 of 3)	1486.0	NM_008375	16204.0	Mm.142716	NM_008375	ENSMUSG00000020405	Fabp6	GT|I-15P|I-BABP|ILBP|ILBP3|Illbp	fatty acid binding protein 6, ileal (gastrotropin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-117682155-3	chr4	117682025	117682225	+	910.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023178)	promoter-TSS (NM_023178)	100.0	NM_023178	66233.0	Mm.29142	NM_023178	ENSMUSG00000009640	Dmap1	1500016M21Rik|DNMAP1|DNMTAP1|Dmtap1|mKIAA1425	DNA methyltransferase 1-associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-58818777-6	chr15	58818716	58818916	+	896.2777710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175212, intron 1 of 6)	intron (NM_175212, intron 1 of 6)	4611.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-86341573-2	chr13	86341473	86341673	+	577.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RodERV21-int|LTR|ERV1	-294778.0	NM_007749	12867.0	Mm.378898	NM_007749	ENSMUSG00000017778	Cox7c	COXVIIc|Cox7c1	cytochrome c oxidase subunit VIIc	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-120496822-4	chr9	120496684	120496884	+	786.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4178.0	NM_026892	68969.0	Mm.28753	NM_026892	ENSMUSG00000006941	Eif1b	1500010M16Rik|3110001N14Rik|Gc20	eukaryotic translation initiation factor 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52580579-4	chr13	52580489	52580689	+	938.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2848.0	NM_001198977	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-58296516-3	chr1	58296420	58296620	+	886.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001008419, intron 10 of 35)	intron (NM_001008419, intron 10 of 35)	18194.0	NM_001008419	213043.0	Mm.414292	NM_001008419	ENSMUSG00000079554	Aox2	Aoh3|Aox3l1	aldehyde oxidase 2	protein-coding	-0.056904223361343	0.0435180386850446	0.349865523718367	-0.313812785997229	-0.318420664098205	-0.305352065305288	-0.309612897204389	-0.313242584661003	-3.62746984308442	0.131253173383059	1
Merged-chr18-38217136-2	chr18	38217036	38217236	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7374.0	NM_029357	75599.0	Mm.36560	NM_029357	ENSMUSG00000051375	Pcdh1	2010005A06Rik|AI585920	protocadherin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-37336974-1	chr10	37336874	37337074	+	898.0	f0_balb.idr	Intergenic	Intergenic	-198048.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-40963119-3	chr14	40962967	40963167	+	844.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145928, intron 1 of 8)	intron (NM_145928, intron 1 of 8)	3829.0	NM_145928	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-22963267-4	chr8	22963168	22963368	+	852.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11568.0	NM_001110783	11733.0	Mm.334444	NM_031158	ENSMUSG00000031543	Ank1	Ank-1|nb|pale	ankyrin 1, erythroid	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-60940782-4	chr1	60940687	60940887	+	956.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31762.0	NM_001281976	12477.0	Mm.390	NM_009843	ENSMUSG00000026011	Ctla4	Cd152|Ctla-4|Ly-56	cytotoxic T-lymphocyte-associated protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-126815076-4	chr4	126814961	126815161	+	999.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001035525, intron 4 of 23)	intron (NM_001035525, intron 4 of 23)	61291.0	NM_001035526	100317.0	Mm.206206	NM_133886	ENSMUSG00000028830	AU040320	A730047D20Rik|AAVR|Kiaa0319l	expressed sequence AU040320	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-105663857-4	chr1	105663773	105663973	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029349)	promoter-TSS (NM_029349)	12.0	NM_029349	227446.0	Mm.337339	NM_029349	ENSMUSG00000026319	2310035C23Rik	6430401N10|Kiaa1468|Relch|mKIAA1468	RIKEN cDNA 2310035C23 gene	protein-coding	3.82854525609115	3.63330916080838	4.9019173492334	3.82953831929339	4.23623344749885	4.499736771024	5.00463502207732	4.57048099464804	0.581818316375091	0.189582868042698	0.66799394718132
Merged-chr4-48039911-2	chr4	48039811	48040011	+	811.125	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5394.0	NM_015743	18124.0	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-89198521-4	chr9	89198435	89198635	+	762.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007534)	promoter-TSS (NM_007534)	-738.0	NM_007534	12045.0	Mm.479217	NM_007534	ENSMUSG00000089929	Bcl2a1b	A1-b	B cell leukemia/lymphoma 2 related protein A1b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-92251084-4	chr1	92250966	92251166	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-70725.0	NM_207225	208727.0	Mm.318567	NM_207225	ENSMUSG00000026313	Hdac4	4932408F19Rik|HD4	histone deacetylase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-50917270-2	chr18	50917170	50917370	+	546.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-200628.0	NM_001081224	71373.0	Mm.63546	NM_001081224	ENSMUSG00000073565	Prr16	5430406M13Rik|AI607429	proline rich 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167648421-2	chr2	167648321	167648521	+	655.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145538, intron 2 of 5)	intron (NM_145538, intron 2 of 5)	13123.0	NM_145538	407243.0	Mm.4863	NM_145538	ENSMUSG00000090213	Tmem189	AI840826|Kua	transmembrane protein 189	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-53485841-3	chr17	53485760	53485960	+	813.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025887, intron 2 of 5)	MLTR11A|LTR|ERVK	6626.0	NM_025887	271457.0	Mm.329123	NM_025887	ENSMUSG00000017831	Rab5a	2410015H04Rik|AI663973|AU021172|nnyRab5a	RAB5A, member RAS oncogene family	protein-coding	-0.995197564771313	-0.977885147025373	-0.989613723575026	-0.991717036974319	-0.994680488069244	-0.624034154867037	-0.98704392539263	-0.560789139360922	2.87912915139887	0.353145955938309	1
Merged-chr11-78346749-2	chr11	78346649	78346849	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001313987)	promoter-TSS (NM_001313987)	39.0	NM_001313987	22248.0	Mm.284811	NM_011676	ENSMUSG00000002058	Unc119	D11Bhm52|HRG4|MRG4|Rg4|Rtg4|Unc119h	unc-119 lipid binding chaperone	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-135652956-4	chr7	135652851	135653051	+	996.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015548)	promoter-TSS (NR_015548)	-637.0	NR_015548	67765.0	Mm.445272	NR_015548	ENSMUSG00000097471	5830432E09Rik	-	RIKEN cDNA 5830432E09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-85257190-1	chr1	85257090	85257290	+	1000.0	f1_balb.idr	intron (NM_001037909, intron 3 of 6)	(TGGA)n|Simple_repeat|Simple_repeat	13376.0	NM_175219	620078.0	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik	RIKEN cDNA C130026I21 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-151741286-4	chr2	151741192	151741392	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001305244)	promoter-TSS (NM_001305244)	18.0	NM_212446	228769.0	Mm.146984	NM_144889	ENSMUSG00000032869	Psmf1	AW048666|BC012260|PI31	proteasome (prosome, macropain) inhibitor subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-38701444-2	chr6	38701344	38701544	+	914.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010433, intron 13 of 14)	intron (NM_010433, intron 13 of 14)	38375.0	NM_001101507	665180.0	Mm.349066	NM_001101507	ENSMUSG00000079598	Clec2l	AI414054|AW122724|Gm1064	C-type lectin domain family 2, member L	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-81041829-4	chr13	81041738	81041938	+	907.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015587, intron 1 of 1)	ORR1E|LTR|ERVL-MaLR	77764.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166710696-1	chr2	166710596	166710796	+	541.0	f1_balb.idr	intron (NM_177782, intron 1 of 39)	MIRb|SINE|MIR	3136.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-30797095-3	chr10	30797015	30797215	+	998.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358842, intron 1 of 14)	MTB_Mm|LTR|ERVL-MaLR	6211.0	NM_001358841	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-14943154-4	chr17	14943045	14943245	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001083880)	promoter-TSS (NM_001083880)	-21.0	NM_175173	71682.0	Mm.122698	NM_175173	ENSMUSG00000046991	Wdr27	0610012K18Rik	WD repeat domain 27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-11455925-4	chr16	11455857	11456057	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028964, intron 13 of 20)	intron (NM_028964, intron 13 of 20)	50309.0	NM_001290148	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-99240317-2	chr3	99240217	99240417	+	872.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	GC_rich|Low_complexity|Low_complexity	-13443.0	NM_009323	21384.0	Mm.88761	NM_009323	ENSMUSG00000027868	Tbx15	Tbx14|Tbx8|de	T-box 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-36060334-4	chr3	36060266	36060466	+	891.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR30|LTR|ERV1	-5613.0	NM_172678	229211.0	Mm.260997	NM_172678	ENSMUSG00000027710	Acad9	2600017P15Rik|4732402K02|C630012L17Rik|NPD002	acyl-Coenzyme A dehydrogenase family, member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3767905-6	chr19	3767924	3768124	+	998.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001167886, exon 2 of 11)	5' UTR (NM_001167886, exon 2 of 11)	603.0	NM_001167885	225888.0	Mm.278578	NM_144871	ENSMUSG00000045098	Kmt5b	AA117471|C630029K18Rik|Suv4-20h1|Suv420h1	lysine methyltransferase 5B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34640930-4	chr17	34640819	34641019	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3964.0	NM_019873	56299.0	Mm.10025	NM_019873	ENSMUSG00000033739	Fkbpl	DIR1|NG7|Ppiase-X|Wisp39	FK506 binding protein-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-19901851-4	chr5	19901736	19901936	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170746, intron 2 of 22)	MIRb|SINE|MIR	-5682.0	NM_001170745	50791.0	Mm.332231	NM_015823	ENSMUSG00000040003	Magi2	AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705	membrane associated guanylate kinase, WW and PDZ domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-131269029-2	chr6	131268929	131269129	+	696.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	-21667.0	NM_008462	16633.0	Mm.4783	NM_008462	ENSMUSG00000030187	Klra2	Klra30|Ly49b	killer cell lectin-like receptor, subfamily A, member 2	protein-coding	-0.682517170727902	-0.675077358822195	-0.393615098526044	-0.679426973422174	-0.556589760513864	-0.502089615564832	-0.677001864645853	-0.411758665688225	0.909678055369255	0.727866807903044	1
Merged-chr17-23187377-4	chr17	23187272	23187472	+	839.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357697, intron 3 of 5)	intron (NM_001357697, intron 3 of 5)	5856.0	NM_009555	22700.0	Mm.437934	NM_009555	ENSMUSG00000002617	Zfp40	CTfin12|NTfin12|Zfp-40	zinc finger protein 40	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-60831710-2	chr17	60831610	60831810	+	779.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17D2|LTR|ERVK	-1818388.0	NM_026497	67993.0	Mm.36507	NM_026497	ENSMUSG00000024228	Nudt12	0610016O18Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-154949742-2	chr4	154949602	154949802	+	838.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11221.0	NM_010419	15208.0	Mm.137268	NM_010419	ENSMUSG00000048001	Hes5	bHLHb38	hes family bHLH transcription factor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-115836076-4	chr6	115835976	115836176	+	748.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110506, intron 1 of 8)	ORR1A3|LTR|ERVL-MaLR	2336.0	NM_001110506	212516.0	Mm.333333	NM_198603	ENSMUSG00000030321	Efcab12	BB124106	EF-hand calcium binding domain 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-106697227-3	chr8	106697088	106697288	+	818.044434	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173037, intron 5 of 17)	MTD|LTR|ERVL-MaLR	14120.0	NM_173037	272538.0	Mm.87151	NM_173037	ENSMUSG00000041949	Tango6	AW413431|E330010G16|Tmco7	transport and golgi organization 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3935969-4	chr19	3935882	3936082	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019449, intron 2 of 10)	intron (NM_019449, intron 2 of 10)	796.0	NM_001161428	54445.0	Mm.262094	NM_019449	ENSMUSG00000036908	Unc93b1	Unc-93B1|Unc93b	unc-93 homolog B1 (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-93189075-2	chr13	93188975	93189175	+	583.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_154997, intron 1 of 15)	intron (NR_154997, intron 1 of 15)	3342.0	NM_001361536	100715.0	Mm.242865	NM_133905	ENSMUSG00000042167	Papd4	8030446C20Rik|AI649009|GLD-2|Gld2	PAP associated domain containing 4	protein-coding	1.46271508532893	1.4559330067056	0.739499522742859	0.924931440991658	1.63931795189945	0.755809983693001	1.52585099252569	0.730883347119079	0.204404590934759	0.890596609389783	0.998431161219273
Merged-chr2-83729932-2	chr2	83729832	83730032	+	590.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008402, intron 1 of 29)	intron (NM_008402, intron 1 of 29)	5535.0	NM_008402	16410.0	Mm.227	NM_008402	ENSMUSG00000027087	Itgav	1110004F14Rik|2610028E01Rik|CD51|D430040G12Rik	integrin alpha V	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-21441036-3	chr19	21440912	21441112	+	970.0	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	intron (NM_010266, intron 1 of 13)	L1MC4|LINE|L1	31649.0	NM_010266	14544.0	Mm.45054	NM_010266	ENSMUSG00000058624	Gda	AU015411|AW047581|GAH	guanine deaminase	protein-coding	3.54231515785918	2.32509363074159	3.53139507807415	3.53877907900734	1.19423999066321	2.15913245145741	2.07621962717248	1.26715984956554	-3.28241987983304	0.000232360746925052	0.00607819238722406
Merged-chr1-131088842-1	chr1	131088742	131088942	+	603.0	f1_c57bl6.idr	intron (NM_008551, intron 1 of 9)	intron (NM_008551, intron 1 of 9)	9001.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-35677363-1	chr8	35677263	35677463	+	598.0	f1_balb.idr	3' UTR (NM_001081279, exon 3 of 3)	3' UTR (NM_001081279, exon 3 of 3)	-88343.0	NR_040376	100504714.0	Mm.381744	NR_040376	ENSMUSG00000097357	Gm16793	-	predicted gene, 16793	ncRNA	0.073373655878253	0.626378092702894	0.0879589593819279	0.082502767583271	0.0747375083259351	0.636534319922189	0.920720434896417	0.0834582210968906	1.56017058099267	0.468247041210176	1
Merged-chr5-8953922-1	chr5	8953822	8954022	+	697.0	f0_balb.idr	intron (NM_008830, intron 25 of 27)	intron (NM_008830, intron 25 of 27)	43224.0	NM_023733	74114.0	Mm.28197	NM_023733	ENSMUSG00000003623	Crot	1200003H03Rik	carnitine O-octanoyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-30577823-3	chr14	30577744	30577944	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5695.0	NR_037237	100526475.0		NR_037237	ENSMUSG00000093156	Mir3076	mir-3076|mmu-mir-3076	microRNA 3076	ncRNA	4.52765126507266	4.72551637405779	4.76360607657373	4.34373394817313	2.18506981555588	2.90096701638916	1.65380943780206	2.82943055080795	-3.18016297930338	2.16820381360164e-08	2.30894461736028e-06
Merged-chr14-122513202-2	chr14	122513102	122513302	+	590.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_153443, intron 1 of 24)	intron (NR_153443, intron 1 of 24)	-21126.0	NM_144844	110821.0	Mm.23876	NM_144844	ENSMUSG00000041650	Pcca	C79630	propionyl-Coenzyme A carboxylase, alpha polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-118596157-4	chr10	118596045	118596245	+	961.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39620.0	NR_104123	103214.0	Mm.30529	NR_104123	ENSMUSG00000112230	Ifngas1	AI447422|Tmevpg1	Ifng antisense RNA 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-101698180-2	chr13	101698080	101698280	+	879.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077495, intron 7 of 15)	MER91A|DNA|hAT-Tip100	-5550.0	NM_001024955	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-138187888-4	chr5	138187764	138187964	+	900.775024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009315)	promoter-TSS (NM_009315)	329.0	NM_178612	66455.0	Mm.24592	NM_178612	ENSMUSG00000036968	Cnpy4	2610019P18Rik	canopy FGF signaling regulator 4	protein-coding	2.65850063407816	2.39676096410669	2.96353880140359	1.93175186247119	2.49988775303818	2.41412394099581	3.20893553735344	2.39806809679855	0.275464294145946	0.722648081263979	0.998431161219273
Merged-chr8-83772835-3	chr8	83772740	83772940	+	698.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31529.0	NM_001163031	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	2.03396957959327	2.28591962696535	2.77165386000153	2.60285105167728	1.90778824695796	1.44088335708764	3.10353630493962	2.70696871164257	0.0197719921878575	0.982285398317651	0.998431161219273
Merged-chr2-164794489-4	chr2	164794400	164794600	+	920.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133240, intron 5 of 5)	intron (NM_133240, intron 5 of 5)	8479.0	NM_133924	101113.0	Mm.295647	NM_133924	ENSMUSG00000050373	Snx21	5730407K14Rik|AI481716	sorting nexin family member 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-64650078-2	chr6	64649978	64650178	+	571.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008167, intron 14 of 15)	intron (NM_008167, intron 14 of 15)	-79047.0	NM_007500	11921.0	Mm.57229	NM_007500	ENSMUSG00000073043	Atoh1	Hath1|MATH-1|Math1|bHLHa14	atonal bHLH transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91927404-2	chr16	91927304	91927504	+	761.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_138597, intron 3 of 6)	intron (NM_138597, intron 3 of 6)	4226.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-42092656-1	chr19	42092556	42092756	+	622.0	f1_c57bl6.idr	intron (NM_145501, intron 1 of 8)	B3|SINE|B2	2221.0	NM_145501	84095.0	Mm.117037	NM_145501	ENSMUSG00000025178	Pi4k2a	Pi4k2	phosphatidylinositol 4-kinase type 2 alpha	protein-coding	1.77467722856475	0.749573971123348	0.728676166331835	0.711989094399093	0.687475129887357	1.73512769281603	2.36896436256179	1.32547597210903	1.78888889474489	0.223677169696256	0.715012082242189
Merged-chr9-106170887-4	chr9	106170812	106171012	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029896)	promoter-TSS (NM_029896)	-17.0	NM_029896	77305.0	Mm.265125	NM_029896	ENSMUSG00000020257	Wdr82	9430077D24Rik|CDW5/WDR82	WD repeat domain containing 82	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-78374502-2	chr16	78374391	78374591	+	572.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001297747, intron 1 of 4)	L1MB8|LINE|L1	2266.0	NR_002700	654432.0	Mm.458574	NR_002700	ENSMUSG00000044645	Gm7334	EG654432	B-cell translocation gene 3 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-69595529-2	chr18	69595429	69595629	+	644.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 8 of 19)	intron (NM_001361128, intron 8 of 19)	249369.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128695273-2	chr10	128695173	128695373	+	838.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177411, intron 1 of 5)	intron (NM_177411, intron 1 of 5)	995.0	NM_177411	19344.0	Mm.12815	NM_011229	ENSMUSG00000000711	Rab5b	C030027M18Rik	RAB5B, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70889950-4	chr14	70889847	70890047	+	876.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008115)	promoter-TSS (NM_008115)	-160.0	NM_001302095	14586.0	Mm.32619	NM_008115	ENSMUSG00000022103	Gfra2	-	glial cell line derived neurotrophic factor family receptor alpha 2	protein-coding	2.82900642797476	1.58343788290507	3.55320698509122	2.31773040063267	2.85272855681091	2.64237298682045	3.25347955374818	2.81465442698684	0.235331404733219	0.764515045605888	0.998431161219273
Merged-chr16-91485833-2	chr16	91485733	91485933	+	831.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_010508, intron 1 of 10)	intron (NM_010508, intron 1 of 10)	618.0	NM_010508	15975.0	Mm.502	NM_010508	ENSMUSG00000022967	Ifnar1	Ifar|Ifnar|Ifrc|Infar	interferon (alpha and beta) receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-88053912-4	chr6	88053819	88054019	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8649.0	NM_009005	19349.0	Mm.333233	NM_009005	ENSMUSG00000079477	Rab7	Rab7a	RAB7, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-21055650-4	chr2	21055514	21055714	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	86740.0	NR_033225	433408.0	Mm.386941	NR_033225		Gm13375	-	predicted gene 13375	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-134460465-4	chr4	134460375	134460575	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1C|Other|Other	-7845.0	NM_019641	16765.0	Mm.378957	NM_019641	ENSMUSG00000028832	Stmn1	19k|Lag|Lap18|Op18|P18|P19|Pig|Pp17|Pp18|Pp19|Pr22|Smn	stathmin 1	protein-coding	3.5045032549983	3.5744746394892	4.0820513512379	3.84180418194353	4.48925990729332	4.30806787865008	3.90936576946808	4.61377670110557	0.806478917595748	0.0682806559146327	0.392101775525094
Merged-chr9-99171358-4	chr9	99171266	99171466	+	961.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31155.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-122566732-4	chr3	122566628	122566828	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114665, intron 5 of 15)	intron (NM_001114665, intron 5 of 15)	-25047.0	NR_106117	102465764.0		NR_106117	ENSMUSG00000104773	Mir7657	mmu-mir-7657	microRNA 7657	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-145116535-4	chr5	145116430	145116630	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023142, intron 1 of 9)	intron (NM_023142, intron 1 of 9)	2274.0	NM_023142	11867.0	Mm.30010	NM_023142	ENSMUSG00000029622	Arpc1b	41kDa|AA408064|AA408534|AA571392|AF007010|AW208418|L72|SOP2Hs|p41-ARC	actin related protein 2/3 complex, subunit 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119354980-4	chr11	119354886	119355086	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178743)	promoter-TSS (NM_178743)	524.0	NM_018822	27029.0	Mm.103788	NM_018822	ENSMUSG00000005043	Sgsh	4632406A19Rik	N-sulfoglucosamine sulfohydrolase (sulfamidase)	protein-coding	4.28135416008442	4.56834351872851	4.05510105736995	3.59232153813055	4.00076581625908	3.34701246994355	4.46112177491855	3.23470615515693	-0.4204991070599	0.397675619579944	0.883903683534674
Merged-chr12-91765802-4	chr12	91765683	91765883	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 1 of 6)	B4A|SINE|B4	20653.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-5101175-2	chr6	5101075	5101275	+	786.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_181595, intron 7 of 15)	intron (NM_181595, intron 7 of 15)	92771.0	NM_011134	18979.0	Mm.237657	NM_011134	ENSMUSG00000002588	Pon1	Pon	paraoxonase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-168249079-2	chr2	168248979	168249179	+	867.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18457.0	NM_001160330	69372.0	Mm.482182	NM_001160330	ENSMUSG00000074576	Mocs3	1700020H17Rik|Uba4	molybdenum cofactor synthesis 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-6081361-1	chr2	6081261	6081461	+	570.0	f0_balb.idr	Intergenic	MER63D|DNA|hAT-Blackjack	48824.0	NM_144883	227545.0	Mm.133542	NM_144883	ENSMUSG00000045319	Proser2	5430407P10Rik|AU067770	proline and serine rich 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-88049085-2	chr6	88048985	88049185	+	879.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3815.0	NM_009005	19349.0	Mm.333233	NM_009005	ENSMUSG00000079477	Rab7	Rab7a	RAB7, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-115040539-2	chr14	115040439	115040639	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-3132.0	NR_029785	723905.0		NR_029785	ENSMUSG00000065508	Mir17	Mirn17|mir-17|mmu-mir-17	microRNA 17	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-115662366-4	chr6	115662281	115662481	+	687.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029780, intron 1 of 16)	B1_Mur1|SINE|Alu	13507.0	NM_001356334	110157.0	Mm.184163	NM_029780	ENSMUSG00000000441	Raf1	6430402F14Rik|AA990557|BB129353|Craf1|D830050J10Rik|Raf-1|c-Raf|cRaf|v-Raf	v-raf-leukemia viral oncogene 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-39974319-2	chr15	39974219	39974419	+	924.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11670.0	NR_045719	105976.0	Mm.394885	NR_045719		AU022793	-	expressed sequence AU022793	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91011180-4	chr16	91011079	91011279	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028368)	promoter-TSS (NR_028368)	-70.0	NR_028368	67394.0	Mm.491293	NR_028368	ENSMUSG00000087354	4930404I05Rik	-	RIKEN cDNA 4930404I05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-41367757-2	chr3	41367646	41367846	+	580.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	125453.0	NR_040385	78706.0	Mm.366094	NR_040385	ENSMUSG00000097639	Platr4	C430002E04Rik	pluripotency associated transcript 4	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-38027101-2	chr18	38027001	38027201	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-28132.0	NM_001205336	106952.0	Mm.247642	NM_139206	ENSMUSG00000024451	Arap3	Centd3|Drag1|E030006K04Rik|cnt-d3	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-119434542-1	chr13	119434442	119434642	+	569.0	f0_balb.idr	intron (NM_145457, intron 2 of 10)	intron (NM_145457, intron 2 of 10)	5640.0	NM_145457	218693.0	Mm.490243	NM_145457	ENSMUSG00000025451	Paip1	PAIP-1	polyadenylate binding protein-interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-10391922-1	chr17	10391822	10392022	+	573.0	f1_balb.idr	Intergenic	Intergenic	-64294.0	NR_077239	319750.0	Mm.383485	NR_077237	ENSMUSG00000089633	A230009B12Rik	-	RIKEN cDNA A230009B12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-56356711-2	chr19	56356611	56356811	+	620.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198059, intron 20 of 40)	intron (NM_198059, intron 20 of 40)	33327.0	NM_198059	18175.0	Mm.386769	NM_008733	ENSMUSG00000049134	Nrap	-	nebulin-related anchoring protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117118113-2	chr11	117118013	117118213	+	552.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166507, intron 2 of 16)	4.5SRNA|scRNA|scRNA	2941.0	NM_001166506	74136.0	Mm.272312	NM_028777	ENSMUSG00000020823	Sec14l1	1200017E04Rik|2810012L19Rik|Naa-35	SEC14-like lipid binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26578552-2	chr17	26578452	26578652	+	577.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026170, intron 1 of 9)	intron (NM_026170, intron 1 of 9)	17040.0	NM_026170	67458.0	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-8770908-1	chr3	8770808	8771008	+	823.0	f0_balb.idr	Intergenic	Intergenic	-103870.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-44375612-2	chr11	44375516	44375716	+	590.5	f0_balb.idr|f1_c57bl6.idr	Intergenic	URR1A|DNA|hAT-Charlie	-24447.0	NM_001303244	16160.0	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	2.79375770854141	1.41210718714567	1.37124887645716	3.08084493724746	2.81729637852731	2.13931635442116	2.3705639140433	2.9612180871526	0.401650800328917	0.673387107562959	0.99440487726309
Merged-chr13-74301376-4	chr13	74301303	74301503	+	842.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9072.0	NM_001317351	11624.0	Mm.290446	NM_009644	ENSMUSG00000021575	Ahrr	mKIAA1234	aryl-hydrocarbon receptor repressor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-9118446-4	chr4	9118324	9118524	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-150869.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44094246-4	chr9	44094148	44094348	+	741.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_016808, exon 13 of 13)	3' UTR (NM_016808, exon 13 of 13)	-7522.0	NM_001190314	259172.0	Mm.227110	NM_147126	ENSMUSG00000034739	Mfrp	rd6	membrane frizzled-related protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-90869648-5	chr8	90869555	90869755	+	864.43335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177224, intron 2 of 39)	intron (NM_177224, intron 2 of 39)	40820.0	NM_177224	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16740955-2	chr7	16740855	16741055	+	548.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198613, intron 1 of 4)	URR1B|DNA|hAT-Charlie	2511.0	NM_198613	232910.0	Mm.333597	NM_198613	ENSMUSG00000008036	Ap2s1	AI043088	adaptor-related protein complex 2, sigma 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-58617930-2	chr1	58617830	58618030	+	774.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	31533.0	NM_025597	66495.0	Mm.2033	NM_025597	ENSMUSG00000026032	Ndufb3	2700033I16Rik|CI-B12	NADH dehydrogenase (ubiquinone) 1 beta subcomplex 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-145200620-3	chr5	145200536	145200736	+	783.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023322, intron 1 of 2)	B3A|SINE|B2	1246.0	NM_023322	67235.0	Mm.432480	NM_023322	ENSMUSG00000029627	Zkscan14	2310046C23Rik|2810437E14Rik|Zfp99|Znf394	zinc finger with KRAB and SCAN domains 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-56135522-4	chr13	56135429	56135629	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159514)	promoter-TSS (NM_001159514)	21.0	NM_012015	26914.0	Mm.283802	NM_012015	ENSMUSG00000015937	H2afy	H2AF12M|mH2a1|macroH2A1	H2A histone family, member Y	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-59471559-3	chr4	59471466	59471666	+	789.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_178164)	TTS (NM_178164)	-32933.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-76226686-4	chr16	76226585	76226785	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	104072.0	NR_040575	78215.0	Mm.243885	NR_040575		4930578N18Rik	-	RIKEN cDNA 4930578N18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-57765119-4	chr9	57765054	57765254	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007713, exon 1 of 13)	exon (NM_007713, exon 1 of 13)	706.0	NM_007713	102414.0	Mm.25720	NM_007713	ENSMUSG00000032316	Clk3	AI256811	CDC-like kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141033573-2	chr4	141033473	141033673	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145958, intron 18 of 35)	intron (NM_001145958, intron 18 of 35)	20088.0	NM_172122	230872.0	Mm.80685	NM_172122	ENSMUSG00000040860	Crocc	-	ciliary rootlet coiled-coil, rootletin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-26646545-2	chr14	26646445	26646645	+	580.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007479, intron 1 of 5)	intron (NM_007479, intron 1 of 5)	8411.0	NM_007479	11843.0	Mm.297768	NM_007479	ENSMUSG00000021877	Arf4	AA407803	ADP-ribosylation factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-128066169-1	chr6	128066069	128066269	+	541.0	f1_balb.idr	intron (NM_001356301, intron 1 of 7)	intron (NM_001356301, intron 1 of 7)	77409.0	NM_175414	109246.0	Mm.21814	NM_175414	ENSMUSG00000030352	Tspan9	6720474K14Rik|9430079M16Rik|AU018597|Tspan-9	tetraspanin 9	protein-coding	-0.480268457480466	-0.467101752555498	0.222955013949356	-0.474733845517557	-0.479444240328687	0.0546288813157795	-0.470456509509936	-0.474152239425658	-0.549896034774043	0.840530923196334	1
Merged-chr11-69630126-2	chr11	69630026	69630226	+	944.9166869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-2845.0	NM_011814	23879.0	Mm.41930	NM_011814	ENSMUSG00000018765	Fxr2	Fxr2h	fragile X mental retardation, autosomal homolog 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-56174015-4	chr10	56173916	56174116	+	935.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033385, intron 13 of 32)	intron (NM_001033385, intron 13 of 32)	54673.0	NM_001033385	544696.0	Mm.411188	NM_001033385	ENSMUSG00000038122	Tbc1d32	Bromi|C6orf170|D630037F22Rik|b2b2284Clo	TBC1 domain family, member 32	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28224184-4	chr17	28224091	28224291	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027185, intron 7 of 10)	intron (NM_027185, intron 7 of 10)	-8563.0	NM_011145	19015.0	Mm.328914	NM_011145	ENSMUSG00000002250	Ppard	NUC-1|NUC1|Nr1c2|PPAR-beta|PPAR-delta|PPAR[b]|PPARdelta|Pparb|Pparb/d	peroxisome proliferator activator receptor delta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91133735-2	chr2	91133635	91133835	+	974.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008653, intron 24 of 31)	B3|SINE|B2	15591.0	NM_008653	17868.0	Mm.10728	NM_008653	ENSMUSG00000002100	Mybpc3	-	myosin binding protein C, cardiac	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-99007736-3	chr6	99007645	99007845	+	663.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001197321, intron 7 of 17)	intron (NM_001197321, intron 7 of 17)	20553.0	NM_001197322	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-33969132-3	chr17	33969031	33969231	+	878.5833130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	9660.0	NR_004446	630499.0	Mm.440940	NM_001081015		H2-K2	EG630499|Gm7035|H-2K1|H-2K1K|H-2K2|H2-K1	histocompatibility 2, K region locus 2	pseudo	1.76862100541685	1.83229397171759	2.03004646445104	1.19724081772319	1.89071159853939	2.11600028655461	2.04580978887676	1.98372585035738	0.775454457047249	0.443089625561478	0.911848228504708
Merged-chr13-117018850-2	chr13	117018750	117018950	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081009, intron 3 of 26)	intron (NM_001081009, intron 3 of 26)	6666.0	NM_001081009	52552.0	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	0.415282283995798	0.665952577006115	0.0578822398929341	0.0536839635418924	0.191399176974363	0.0645549113697083	0.059082789555731	0.584210477660889	-0.575680796700149	0.781893815134329	1
Merged-chr14-73436773-2	chr14	73436673	73436873	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51484.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-84919534-2	chr11	84919434	84919634	+	899.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-3168.0	NM_001005223	448850.0	Mm.379733	NM_001005223	ENSMUSG00000020526	Znhit3	Myohd1|TRIP-3|Trip3	zinc finger, HIT type 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-90516116-4	chr13	90516009	90516209	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	389246.0	NM_001145879	435376.0	Mm.292579	NM_001145879	ENSMUSG00000078958	Atp6ap1l	EG435376	ATPase, H+ transporting, lysosomal accessory protein 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-128803904-2	chr4	128803804	128804004	+	999.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081098, intron 1 of 8)	intron (NM_001081098, intron 1 of 8)	2208.0	NM_001081098	230761.0	Mm.22616	NM_001081098	ENSMUSG00000028799	Zfp362	-	zinc finger protein 362	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-102774106-4	chr11	102774019	102774219	+	748.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009613, intron 14 of 26)	CpG	12684.0	NM_001110778	11488.0	Mm.89854	NM_009613	ENSMUSG00000020926	Adam11	AW060611|Mdc	a disintegrin and metallopeptidase domain 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-112718199-4	chr6	112718087	112718287	+	946.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_080448, exon 22 of 22)	3' UTR (NM_080448, exon 22 of 22)	-21517.0	NM_001167730	58186.0	Mm.103812	NM_021385	ENSMUSG00000030254	Rad18	2810024C04Rik|Rad18sc	RAD18 E3 ubiquitin protein ligase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71164722-2	chr17	71164622	71164822	+	973.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-18810.0	NM_001357791	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-17727930-4	chr10	17727784	17727984	+	977.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4656.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-59183698-2	chr2	59183598	59183798	+	856.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 1 of 20)	intron (NM_175464, intron 1 of 20)	22848.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-41521509-4	chr13	41521401	41521601	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A|LTR|ERVL-MaLR	-34141.0	NM_001111324	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-45553982-2	chr17	45553882	45554082	+	940.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-1718.0	NM_008690	18037.0	Mm.57043	NM_008690	ENSMUSG00000023947	Nfkbie	I-kappa-B-epsilon|IKBE|IkB-E|NF-kappa-BIE|ikB-epsilon	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, epsilon	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-54789912-2	chr13	54789796	54789996	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028841, intron 1 of 7)	CpG	491.0	NM_028841	74257.0	Mm.32883	NM_028841	ENSMUSG00000025875	Tspan17	2210021G21Rik|AI047581|Fbxo23|Tm4sf17	tetraspanin 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150523558-2	chr4	150523447	150523647	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 10 of 22)	intron (NM_001085492, intron 10 of 22)	128627.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-146294644-2	chr5	146294544	146294744	+	733.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_153599, intron 7 of 12)	intron (NM_153599, intron 7 of 12)	63394.0	NM_153599	264064.0	Mm.260576	NM_153599	ENSMUSG00000029635	Cdk8	-	cyclin-dependent kinase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116785042-1	chr11	116784942	116785142	+	576.0	f0_balb.idr	Intergenic	RLTR24B_MM|LTR|ERV1	-9535.0	NM_011371	20445.0	Mm.436887	NM_011371	ENSMUSG00000009588	St6galnac1	Siat7a	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 1	protein-coding	2.16615116166233	1.73033955498015	2.34589193416439	2.50049024399127	2.7196834864319	2.68078235097467	2.86540185618386	1.8466018166784	0.810646843427362	0.331868245528135	0.832887019212082
Merged-chr1-40325295-2	chr1	40325195	40325395	+	811.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_133193, intron 1 of 10)	intron (NM_133193, intron 1 of 10)	706.0	NM_133193	107527.0	Mm.155583	NM_133193	ENSMUSG00000070942	Il1rl2	AI481289|AW551444|IL-1Rrp2	interleukin 1 receptor-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-96687047-2	chr10	96686947	96687147	+	789.125	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	70046.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-51459190-1	chr1	51459090	51459290	+	711.0	f1_c57bl6.idr	Intergenic	LTR41|LTR|ERVL	19209.0	NM_001310548	109019.0	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	1.07745987192434	1.26614359262117	0.489683593298601	0.942519748567443	0.472491517235045	0.500871817768823	0.491704503764831	1.1676208353171	-1.37857520847576	0.43122453885103	1
Merged-chr11-103411085-4	chr11	103411084	103411284	+	853.116699	f1_balb.idr|f1_c57bl6.idr	intron (NM_183034, intron 1 of 11)	intron (NM_183034, intron 1 of 11)	1480.0	NM_183034	353047.0	Mm.18556	NM_183034	ENSMUSG00000034247	Plekhm1	AP162|B2|BC038943|D330036J23Rik	pleckstrin homology domain containing, family M (with RUN domain) member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-116111836-3	chr9	116111724	116111924	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029575, intron 3 of 6)	URR1B|DNA|hAT-Charlie	63539.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	1.86537525415608	1.69625528949676	0.952452991048462	0.938989349066954	1.88249157861627	1.21062082740644	1.35932231675286	1.81038412415085	0.509663290254364	0.688519727655863	0.996533206832645
Merged-chr18-22168705-2	chr18	22168605	22168805	+	732.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027616, intron 1 of 22)	intron (NM_027616, intron 1 of 22)	2691.0	NM_027616	70950.0	Mm.235716	NM_027616	ENSMUSG00000024306	Ccdc178	4921528I01Rik	coiled coil domain containing 178	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-20526185-2	chr10	20526085	20526285	+	778.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013875, intron 2 of 12)	intron (NM_013875, intron 2 of 12)	22143.0	NM_001347366	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21161498-4	chr9	21161416	21161616	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-4198.0	NM_183408	18577.0	Mm.191749	NM_019798	ENSMUSG00000032177	Pde4a	D9Ertd60e|Dpde2	phosphodiesterase 4A, cAMP specific	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-125349356-2	chr5	125349256	125349456	+	711.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8262.0	NM_001205083	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	-0.140481199013692	-0.119425591523919	0.629404145340199	-0.131559699312749	-0.139145802527351	-0.117897867156508	-0.124736039918078	0.855765282844293	0.573512409080274	0.810959438612107	1
Merged-chr10-59894364-2	chr10	59894264	59894464	+	591.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019965, intron 6 of 8)	intron (NM_019965, intron 6 of 8)	14773.0	NM_019965	56709.0	Mm.103610	NM_019965	ENSMUSG00000020109	Dnajb12	Dj10|mDj10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-26687222-4	chr8	26687132	26687332	+	940.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	137191.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-56798437-2	chr6	56798337	56798537	+	788.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145958)	promoter-TSS (NM_145958)	-624.0	NM_001362213	210973.0	Mm.57295	NM_145958	ENSMUSG00000059486	Kbtbd2	BC022962|Bklhd1|mKIAA1489	kelch repeat and BTB (POZ) domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-127410422-3	chr3	127410334	127410534	+	994.2777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001327938, intron 1 of 47)	intron (NM_001327938, intron 1 of 47)	-1376.0	NM_001327939	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	0.397561562951587	0.428925767345267	1.36897935229001	1.0202683243427	0.399561140732894	0.431189224290404	0.629936333650729	1.23349691002111	-0.685040433593858	0.701557143498704	1
Merged-chr2-3420717-2	chr2	3420617	3420817	+	812.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355205, intron 1 of 3)	(TCTG)n|Simple_repeat|Simple_repeat	-1588.0	NM_001355209	104362.0	Mm.2688	NM_008579	ENSMUSG00000026650	Meig1	MLZ-278|Meg1	meiosis expressed gene 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-154105006-4	chr1	154104914	154105114	+	931.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-96173.0	NM_001204908	100503355.0	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	Gm10178|Gm203	zinc finger protein 648	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-120878307-2	chr7	120878207	120878407	+	573.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001267710, intron 4 of 17)	intron (NM_001267710, intron 4 of 17)	27118.0	NM_001267711	13631.0	Mm.25997	NM_007908	ENSMUSG00000035064	Eef2k	C86191|eEF-2K	eukaryotic elongation factor-2 kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-34663301-4	chr18	34663216	34663416	+	810.920837	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11580.0	NM_178347	52563.0	Mm.196638	NM_178347	ENSMUSG00000024370	Cdc23	6030435O18|D18Ertd243e	CDC23 cell division cycle 23	protein-coding	2.98169197531616	3.25162220235468	2.36421064866588	3.69100591616711	2.34409458383838	2.93716900244918	3.42557518064107	3.70877759476702	0.0711316872619246	0.915881209256437	0.998431161219273
Merged-chr10-79705877-2	chr10	79705777	79705977	+	567.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077184, intron 1 of 6)	intron (NM_001077184, intron 1 of 6)	1519.0	NM_009768	12215.0	Mm.726	NM_009768	ENSMUSG00000023175	Bsg	AI115436|AI325119|CD147|EMMPRIN|HT-7	basigin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-45284080-3	chr3	45283983	45284183	+	902.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045172, intron 6 of 8)	intron (NR_045172, intron 6 of 8)	94177.0	NR_045172	72511.0	Mm.140700	NR_045172	ENSMUSG00000097040	2610316D01Rik	-	RIKEN cDNA 2610316D01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88145441-2	chr3	88145341	88145541	+	952.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310593, intron 1 of 10)	intron (NM_001310593, intron 1 of 10)	3069.0	NM_133665	17261.0	Mm.28184	NM_133665	ENSMUSG00000001419	Mef2d	C80750	myocyte enhancer factor 2D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-35110642-2	chr2	35110542	35110742	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_012018, intron 1 of 43)	intron (NM_012018, intron 1 of 43)	1150.0	NM_012018	26920.0	Mm.231332	NM_012018	ENSMUSG00000057110	Cntrl	6720467O09Rik|AA968343|Cep1|Cep110|IB3/5|Ma2a8|b2b1468.1Clo|b2b1468Clo	centriolin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-59175441-4	chr3	59175330	59175530	+	965.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177855, intron 15 of 43)	intron (NM_177855, intron 15 of 43)	19674.0	NM_001302203	84111.0	Mm.60267	NM_032399	ENSMUSG00000051431	Gpr87	-	G protein-coupled receptor 87	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-93909214-2	chr10	93909120	93909320	+	796.5	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-18018.0	NM_019648	56307.0	Mm.289329	NM_019648	ENSMUSG00000036112	Metap2	4930584B20Rik|A930035J23Rik|AI047573|AL024412|AU014659|Amp2|Mnpep|p67|p67eIF2	methionine aminopeptidase 2	protein-coding	2.06704336857267	2.55918125963865	2.88854879569838	3.01627479306513	3.35012946697185	1.60392242487518	4.29917104091594	4.17930248782913	1.60810435992327	0.0327499616374023	0.25263654504429
Merged-chr7-79273056-4	chr7	79272952	79273152	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018811)	promoter-TSS (NM_018811)	-214.0	NM_018811	54608.0	Mm.365490	NM_018811	ENSMUSG00000039202	Abhd2	2210009N18Rik|LABH2|Labh-2	abhydrolase domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81366239-4	chr10	81366121	81366321	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001014836)	promoter-TSS (NM_001014836)	-401.0	NM_001014836	432479.0	Mm.440450	NM_001014836	ENSMUSG00000020234	4930404N11Rik	2210409H10Rik|5730551K18Rik|AI854616	RIKEN cDNA 4930404N11 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-74955371-9	chr15	74955331	74955531	+	956.8037109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001164036, exon 1 of 4)	5' UTR (NM_001164036, exon 1 of 4)	325.0	NM_001164040	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	1.20658061755987	1.15605237225594	2.17072484439801	1.41875982290906	1.05554556248309	1.80199582202216	0.90163386076247	1.55756323132169	-0.599227811926947	0.628537216316768	0.981044028886007
Merged-chr8-34153649-2	chr8	34153549	34153749	+	582.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026432)	promoter-TSS (NM_026432)	-914.0	NM_026432	67887.0	Mm.290353	NM_026432	ENSMUSG00000031532	Saraf	1810045K07Rik|Tmem66	store-operated calcium entry-associated regulatory factor	protein-coding	1.0534573639455	0.612955473778381	0.924099351637498	1.01619840433752	1.06383944026751	0.614742485164457	0.931860472276397	1.02226143309954	0.0371010399237813	0.980286190487979	1
Merged-chr5-3492805-2	chr5	3492705	3492905	+	707.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 5 of 7)	intron (NM_009873, intron 5 of 7)	-51028.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-66914019-2	chr9	66913919	66914119	+	623.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	5686.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91206452-4	chr2	91206343	91206543	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357067, intron 6 of 10)	intron (NM_001357067, intron 6 of 10)	3531.0	NM_007387	11432.0	Mm.45570	NM_007387	ENSMUSG00000002103	Acp2	Acp-2|LAP	acid phosphatase 2, lysosomal	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-38562802-4	chr16	38562718	38562918	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001205287)	promoter-TSS (NM_001205287)	4.0	NM_026407	67846.0	Mm.310476	NM_026407	ENSMUSG00000002845	Tmem39a	2610033C09Rik	transmembrane protein 39a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-22347286-2	chr16	22347186	22347386	+	639.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	52298.0	NR_153764	100043507.0		NR_153764		Gng5-ps	Gm15776	G protein subunit gamma 5, pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141182126-4	chr4	141181988	141182188	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172518, intron 4 of 9)	ORR1C2|LTR|ERVL-MaLR	-31868.0	NM_001081174	76166.0	Mm.271064	NM_001081174	ENSMUSG00000073733	Rsg1	6330545A04Rik|Gm723|b2b2804Clo|b2b2827Clo	REM2 and RAB-like small GTPase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-22594517-2	chr8	22594417	22594617	+	710.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001198998)	promoter-TSS (NM_001198998)	-704.0	NM_011696	22335.0	Mm.227704	NM_011696	ENSMUSG00000008892	Vdac3	-	voltage-dependent anion channel 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115187393-4	chr5	115187281	115187481	+	991.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310712, intron 1 of 5)	intron (NM_001310712, intron 1 of 5)	-1260.0	NM_001310715	29867.0	Mm.38551	NM_013879	ENSMUSG00000029544	Cabp1	caldendrin	calcium binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78270768-3	chr15	78270660	78270860	+	626.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	14089.0	NR_106137	102465776.0		NR_106137	ENSMUSG00000098996	Mir7676-1	Gm27600|mmu-mir-7676-1	microRNA 7676-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-102234713-2	chr15	102234613	102234813	+	771.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_011244)	TTS (NM_011244)	-2778.0	NM_013566	16421.0	Mm.58	NM_013566	ENSMUSG00000001281	Itgb7	Ly69	integrin beta 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-132729073-2	chr7	132728973	132729173	+	743.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347630, intron 3 of 3)	intron (NM_001347630, intron 3 of 3)	47843.0	NM_001347630	77938.0	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59520667-4	chr15	59520561	59520761	+	954.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026746, intron 4 of 6)	intron (NM_026746, intron 4 of 6)	-127993.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	0.77208047115734	0.641981181104101	1.26233159693741	0.622196914883933	1.25114988841904	1.3309157137428	0.633332081932217	1.42789097349787	1.57325015794446	0.311980733552861	0.813656822463875
Merged-chr2-6731040-4	chr2	6730939	6731139	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110232, intron 3 of 15)	intron (NM_001110232, intron 3 of 15)	-9377.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-103957090-2	chr11	103956990	103957190	+	905.1666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur3|SINE|Alu	-3034.0	NM_008740	18195.0	Mm.260117	NM_008740	ENSMUSG00000034187	Nsf	AI316878|AU020090|AU067812|SKD2	N-ethylmaleimide sensitive fusion protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-21210617-4	chr5	21210532	21210732	+	946.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153365, intron 5 of 26)	(CA)n|Simple_repeat|Simple_repeat	24365.0	NM_001359877	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-3512931-4	chr2	3512851	3513051	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177647)	promoter-TSS (NM_177647)	-114.0	NM_177647	227526.0	Mm.211455	NM_177647	ENSMUSG00000039496	Cdnf	9330140G23|Armetl1	cerebral dopamine neurotrophic factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-87533808-3	chr6	87533699	87533899	+	715.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286610)	promoter-TSS (NM_001286610)	-540.0	NM_001286610	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	0.0178250656878695	1.26431460874079	0.0398054739364982	1.12234717603791	0.0199134995244336	0.0524250644301801	0.0421032200198829	0.0331041130924233	-4.51945915196876	0.0319582366216737	1
Merged-chr8-88266255-2	chr8	88266155	88266355	+	937.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6148.0	NM_007406	11513.0	Mm.288206	NM_007406	ENSMUSG00000031659	Adcy7	AA407758	adenylate cyclase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116020235-4	chr11	116020092	116020292	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4312.0	NM_008211	15081.0	Mm.18516	NM_008211	ENSMUSG00000016559	H3f3b	9430068D06Rik|H3.3B	H3 histone, family 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-75504988-2	chr18	75504890	75505090	+	640.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_201354, intron 9 of 11)	intron (NM_201354, intron 9 of 11)	-9655.0	NR_045879	100038353.0	Mm.440724	NR_045879	ENSMUSG00000097712	Gm10532	-	predicted gene 10532	ncRNA	0.755460387542545	0.306709064064437	0.300120032211897	0.457996932968281	1.00925356456955	0.502980115106235	0.301573802945772	0.72268651871974	1.21450691151463	0.503271831032732	1
Merged-chr4-129785383-4	chr4	129785265	129785465	+	979.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35114.0	NM_008974	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-64446514-2	chr9	64446414	64446614	+	608.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001134399, intron 1 of 24)	intron (NM_001134399, intron 1 of 24)	60888.0	NM_001134399	214058.0	Mm.127721	NM_172522	ENSMUSG00000036466	Megf11	2410080H04Rik|D130061K05	multiple EGF-like-domains 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-30035274-4	chr6	30035181	30035381	+	956.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-12707.0	NM_001164228	18181.0	Mm.259258	NM_010938	ENSMUSG00000058440	Nrf1	C87038|D6Ertd415e	nuclear respiratory factor 1	protein-coding	1.84440388212136	1.15050973052295	1.56689082987576	2.33528356568019	2.30282282275536	2.42607937511697	1.13087307562552	1.69434648410134	0.490972913165058	0.662139697310962	0.991056031673253
Merged-chr2-164920766-2	chr2	164920666	164920866	+	600.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9016.0	NM_199027	329559.0	Mm.330776	NM_199027	ENSMUSG00000039834	Zfp335	1810045J01Rik|NIF-1|Nif1|Znf335	zinc finger protein 335	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-57851339-4	chr6	57851224	57851424	+	841.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(GAA)n|Simple_repeat|Simple_repeat	-6867.0	NM_134183	171201.0	Mm.377179	NM_134183	ENSMUSG00000115343	Vmn1r21	V1rc28	vomeronasal 1 receptor 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-100176200-4	chr3	100176106	100176306	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104341, intron 3 of 13)	intron (NR_104341, intron 3 of 13)	13743.0	NR_104341	14547.0	Mm.279228	NM_010269	ENSMUSG00000027865	Gdap2	C77050|D3Ertd801e	ganglioside-induced differentiation-associated-protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-65766867-1	chr5	65766767	65766967	+	541.0	f1_c57bl6.idr	intron (NM_001024917, intron 1 of 19)	B2_Mm1a|SINE|B2	3346.0	NM_001024917	333789.0	Mm.332398	NM_001024917	ENSMUSG00000037795	N4bp2	B3bp|E430014I16|Gm1791|Gm868	NEDD4 binding protein 2	protein-coding	-0.208283783115327	-0.190719793063729	-0.196438776803222	0.56960718211407	-0.207177803637276	-0.189435193761239	-0.195174548196752	0.578527616610749	0.0282038014051437	0.990994131209618	1
Merged-chr2-153276356-3	chr2	153276258	153276458	+	927.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F|LTR|ERVL-MaLR	-15058.0	NM_008444	16569.0	Mm.315560	NM_008444	ENSMUSG00000027475	Kif3b	AI854312|AW549267|mKIAA0359	kinesin family member 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-137169656-2	chr6	137169555	137169755	+	738.375	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164212)	promoter-TSS (NM_001164212)	63.0	NM_001164214	232441.0	Mm.46233	NM_181988	ENSMUSG00000030222	Rerg	-	RAS-like, estrogen-regulated, growth-inhibitor	protein-coding	1.76080328652576	2.09510072373636	2.0242429893608	1.85130306526996	1.77463149390421	1.83769549023319	2.24870007982785	1.18568980459692	-0.327954923221169	0.749265200269628	0.998431161219273
Merged-chr14-121989379-2	chr14	121989279	121989479	+	598.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026861, intron 6 of 8)	intron (NM_026861, intron 6 of 8)	-24186.0	NM_183031	321019.0	Mm.265618	NM_183031	ENSMUSG00000051212	Gpr183	Ebi2	G protein-coupled receptor 183	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-129469003-3	chr6	129468884	129469084	+	963.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_132130, exon 3 of 6)	non-coding (NR_132130, exon 3 of 6)	3795.0	NM_001309637	56644.0	Mm.239516	NM_020008	ENSMUSG00000079293	Clec7a	BGR|Clecsf12|beta-GR	C-type lectin domain family 7, member a	protein-coding	2.40803502292741	2.28461909572671	2.61402802126125	2.45338334853724	1.93152904108496	2.42415915046857	1.31164305745627	1.52205373642132	-1.41302336595939	0.132385660076415	0.56954804343643
Merged-chr10-98777904-1	chr10	98777804	98778004	+	545.0	f1_balb.idr	Intergenic	Intergenic	-136738.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-155564081-3	chr4	155563975	155564175	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355599, intron 1 of 10)	CpG	260.0	NM_001355599	192185.0	Mm.28347	NM_138671	ENSMUSG00000029063	Nadk	4432404C02Rik|BC004012	NAD kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-3497863-4	chr5	3497737	3497937	+	886.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 5 of 7)	intron (NM_009873, intron 5 of 7)	-45996.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34365250-2	chr17	34365151	34365351	+	792.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_079835, exon 7 of 9)	exon (NM_079835, exon 7 of 9)	10429.0	NM_079835	547431.0	Mm.441007	NM_079835	ENSMUSG00000024340	Btnl2	BTL-II|BTLN2|Btl2|Gm315|NG9	butyrophilin-like 2	protein-coding	0.530328096932217	0.600917300877108	0.853421148688774	0.925953768058321	1.03760903480466	0.411314614315534	0.404188956070212	0.563338582451423	-0.551923690810356	0.740009260815033	1
Merged-chr4-121016055-4	chr4	121015959	121016159	+	960.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133716, intron 1 of 9)	intron (NM_133716, intron 1 of 9)	1188.0	NM_133716	69780.0	Mm.271819	NM_133716	ENSMUSG00000032870	Smap2	1810031K02Rik|AA408614|Smap1l	small ArfGAP 2	protein-coding	-1.56355737717652	-1.81244775989375	-1.82128546162293	-1.82854501295842	-1.83962066705452	-1.81053259306168	-1.81928479966835	-1.82724555674025	-1.28500227969968	0.715751224811686	1
Merged-chr10-6462371-1	chr10	6462271	6462471	+	556.0	f0_balb.idr	Intergenic	L1MCa|LINE|L1	-296222.0	NM_001302794	18390.0	Mm.438000	NM_011013	ENSMUSG00000000766	Oprm1	M-OR-1|MOP-R|MOR-1|MOR-1O|Oprm|mor|muOR	opioid receptor, mu 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-93823158-1	chr16	93823058	93823258	+	680.0	f1_balb.idr	Intergenic	Intergenic	-8963.0	NM_001045529	338467.0	Mm.287329	NM_001045529	ENSMUSG00000039456	Morc3	1110051N18Rik|AI452146|BF318192|D16Jhu32e|NXP2|Zcwcc3	microrchidia 3	protein-coding	1.20233148821882	2.07274457992869	1.76642106639537	1.03758137345109	2.2371532410072	1.32672322159358	1.78087236128373	1.72398042931769	0.658826682105511	0.566039614936463	0.962163739245057
Merged-chr13-47194917-3	chr13	47194807	47195007	+	812.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170643, intron 1 of 7)	intron (NM_001170643, intron 1 of 7)	904.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-59853337-4	chr4	59853195	59853395	+	854.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172468, intron 1 of 8)	(GA)n|Simple_repeat|Simple_repeat	47645.0	NM_172468	209131.0	Mm.259705	NM_172468	ENSMUSG00000028385	Snx30	4732481H14Rik|C030041J06Rik	sorting nexin family member 30	protein-coding	2.54707880380913	2.66155010498271	2.053978296301	2.59545846852704	1.56445383323832	2.68125565911141	2.86787336899662	1.83562529327778	-0.275580820768528	0.749944226864676	0.998431161219273
Merged-chr3-59230594-2	chr3	59230494	59230694	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177855, intron 16 of 43)	intron (NM_177855, intron 16 of 43)	-19712.0	NM_028808	74191.0	Mm.90067	NM_028808	ENSMUSG00000036362	P2ry13	2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174	purinergic receptor P2Y, G-protein coupled 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-80112610-2	chr15	80112510	80112710	+	624.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_207708, intron 3 of 3)	intron (NM_207708, intron 3 of 3)	-20544.0	NM_025609	66513.0	Mm.288245	NM_025609	ENSMUSG00000022414	Tab1	2310012M03Rik|Map3k7ip1|b2b449Clo	TGF-beta activated kinase 1/MAP3K7 binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-163614016-2	chr2	163613916	163614116	+	655.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_131225, intron 3 of 3)	intron (NR_131225, intron 3 of 3)	6804.0	NM_001305803	76080.0	Mm.89828	NM_029512	ENSMUSG00000017679	Ttpal	3110080A02Rik|5830472M02Rik	tocopherol (alpha) transfer protein-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-94439324-2	chr3	94439224	94439424	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-2673.0	NM_016901	53814.0	Mm.440422	NM_016901	ENSMUSG00000028141	Oaz3	AZ3|Az-3|Oaz-t	ornithine decarboxylase antizyme 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81836640-4	chr15	81836562	81836762	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21664.0	NM_020507	57259.0	Mm.323595	NM_020507	ENSMUSG00000048546	Tob2	2900090N22Rik|4930545K18Rik|AV071822|mKIAA1663	transducer of ERBB2, 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-164834643-4	chr2	164834494	164834694	+	823.299988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001082974)	promoter-TSS (NM_001082974)	821.0	NM_008906	19025.0	Mm.359633	NM_008906	ENSMUSG00000017760	Ctsa	AU019505|PPCA|Ppgb	cathepsin A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-25090579-4	chr8	25090478	25090678	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031257, intron 1 of 11)	intron (NM_031257, intron 1 of 11)	11233.0	NM_031257	83436.0	Mm.261122	NM_031257	ENSMUSG00000031557	Plekha2	6430512N22Rik|AI851530|AU041791|TAPP2|W91773	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81345140-2	chr10	81345040	81345240	+	630.099976	f1_balb.idr|f1_c57bl6.idr	TTS (NM_010440)	TTS (NM_010440)	-1874.0	NM_148951	209047.0	Mm.218755	NM_148951	ENSMUSG00000034872	Gipc3	Ahl5|Rgs19ip3	GIPC PDZ domain containing family, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122614497-4	chr5	122614384	122614584	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358917)	promoter-TSS (NM_001358917)	60.0	NM_001358919	12589.0	Mm.10125	NM_009879	ENSMUSG00000029469	Ift81	AW060663|Cdv-1|Cdv-1r|Cdv1	intraflagellar transport 81	protein-coding	3.25893769147051	1.93730525268802	2.60581781626142	2.38635354657276	3.73522470840255	2.9782565526744	3.41422873901255	2.89268126555543	1.14097327455166	0.10357452327796	0.50108352027781
Merged-chr14-121928116-1	chr14	121928016	121928216	+	578.0	f1_balb.idr	intron (NM_026861, intron 4 of 8)	intron (NM_026861, intron 4 of 8)	-12342.0	NM_182806	110168.0	Mm.37405	NM_182806	ENSMUSG00000050350	Gpr18	-	G protein-coupled receptor 18	protein-coding	-0.394821885508196	-0.757757771966637	-0.195169845244714	-0.763364242872938	-0.766804349483022	-0.757042947947547	-0.76022703016277	-0.762938404624901	-3.14800507728477	0.280583858862927	1
Merged-chr10-79924075-7	chr10	79924016	79924216	+	943.9523929999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 3 of 4)	RLTR12A|LTR|ERVK	-2927.0	NM_001288626	13496.0	Mm.301282	NM_007880	ENSMUSG00000019564	Arid3a	Bright|Dri1|Dril1	AT rich interactive domain 3A (BRIGHT-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69998955-4	chr11	69998927	69999127	+	988.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001291127, exon 3 of 4)	exon (NM_001291127, exon 3 of 4)	1565.0	NM_001291127	78246.0	Mm.20805	NM_030064	ENSMUSG00000018572	Phf23	JUNE-1	PHD finger protein 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-102406724-4	chr15	102406623	102406823	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013672, intron 1 of 5)	CpG-5406	407.0	NM_013672	20683.0	Mm.4618	NM_013672	ENSMUSG00000001280	Sp1	1110003E12Rik|AA450830|AI845540|Sp1-1	trans-acting transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-8850324-2	chr10	8850224	8850424	+	613.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 2 of 19)	intron (NM_175155, intron 2 of 19)	35746.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	-1.20406370813143	-1.56956373024278	-1.57884638916872	-1.58647144159385	-1.598104728449	-1.56755213932999	-1.57674499865798	-1.58510656085539	-1.70745470802464	0.626337835847419	1
Merged-chr8-88619320-3	chr8	88619194	88619394	+	646.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16834.0	NM_027840	71607.0	Mm.270607	NM_027840	ENSMUSG00000031662	Snx20	9130017C17Rik	sorting nexin 20	protein-coding	1.75235858784162	1.0073062940174	1.39513575362574	1.8549468041723	0.952686575085117	2.00364853330271	1.93029205758265	1.36457245762789	0.280355681713847	0.820195771348495	0.998431161219273
Merged-chr1-184825335-4	chr1	184825231	184825431	+	816.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133684, intron 4 of 7)	intron (NM_133684, intron 4 of 7)	-2843.0	NR_035502	100316821.0		NR_035502	ENSMUSG00000088559	Mir1981	mir-1981|mmu-mir-1981	microRNA 1981	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-19951931-4	chr5	19951818	19952018	+	910.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015823, intron 1 of 21)	intron (NM_015823, intron 1 of 21)	44400.0	NM_015823	50791.0	Mm.332231	NM_015823	ENSMUSG00000040003	Magi2	AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705	membrane associated guanylate kinase, WW and PDZ domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-143082456-2	chr2	143082356	143082556	+	875.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_020595)	TTS (NM_020595)	4063.0	NM_020595	57329.0	Mm.157751	NM_020595	ENSMUSG00000027416	Otor	CDRAP|Fdp|MIA|MIAL	otoraplin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-146492583-2	chr4	146492483	146492683	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13D3|LTR|ERVK	-9417.0	NM_001243138	100041433.0	Mm.441741	NM_001243138	ENSMUSG00000056300	Zfp981	Gm13247	zinc finger protein 981	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-177556019-2	chr1	177555919	177556119	+	605.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	86924.0	NR_037994	75589.0	Mm.86666	NR_037994	ENSMUSG00000101746	2310043L19Rik	-	RIKEN cDNA 2310043L19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-78894384-7	chr1	78894291	78894491	+	918.107117	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151519, intron 3 of 3)	intron (NR_151519, intron 3 of 3)	77480.0	NM_021342	57814.0	Mm.24386	NM_021342	ENSMUSG00000047330	Kcne4	AW487937|MiRP3	potassium voltage-gated channel, Isk-related subfamily, gene 4	protein-coding	0.740181940562049	1.66341042719748	1.97137376003781	1.64532286634656	1.0957182550701	1.03946407675472	1.00658648806181	0.764151985378665	-2.40733899704738	0.0828121507067562	0.440416748306587
Merged-chr19-23085829-1	chr19	23085729	23085929	+	758.799988	f0_c57.idr	Intergenic	Intergenic	-55397.0	NM_010638	16601.0	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|Gm9971	Kruppel-like factor 9	protein-coding	1.90960261615152	2.19637669250797	1.03867350279832	2.18877292276132	0.741077241778625	0.810423689869464	1.04733654065629	0.769646281287681	-4.5790520309465	0.00166577952101391	0.0293336927981286
Merged-chr2-148531758-4	chr2	148531571	148531771	+	945.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-88136.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	1.70518633825229	2.20837681904186	1.21895237496045	2.46611888709915	1.38031717263111	2.45970176670845	1.86364030559166	2.63471337672657	0.457751569599889	0.655636570063669	0.988480468412152
Merged-chr19-53143817-2	chr19	53143717	53143917	+	726.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013758)	promoter-TSS (NM_013758)	-180.0	NM_013758	27360.0	Mm.426080	NM_013758	ENSMUSG00000025026	Add3	AI463285|R75380	adducin 3 (gamma)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-70885867-4	chr2	70885761	70885961	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4|LINE|L1	-60381.0	NM_172664	228012.0	Mm.136511	NM_172664	ENSMUSG00000041997	Tlk1	4930545J15Rik	tousled-like kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-13627777-4	chr8	13627639	13627839	+	998.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 2 of 23)	intron (NM_009025, intron 2 of 23)	49848.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-29981772-2	chr17	29981672	29981872	+	561.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-23267.0	NM_148926	21769.0	Mm.220972	NM_148926	ENSMUSG00000044477	Zfand3	AW539211|TEG-27|Tex27	zinc finger, AN1-type domain 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132312903-2	chr4	132312803	132313003	+	762.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027925, intron 8 of 8)	B1_Mm|SINE|Alu	2200.0	NR_028537	100217437.0		NR_028537		Snord99	MBII-420	small nucleolar RNA, C/D box 99	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-32137936-3	chr9	32137837	32138037	+	616.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195632, intron 2 of 21)	intron (NM_001195632, intron 2 of 21)	21801.0	NM_001195632	330914.0	Mm.46683	NM_177379	ENSMUSG00000041444	Arhgap32	3426406O18Rik|Gc-gap|Grit|Px-rics|Rics|mKIAA0712|p200Rhogap|p250Gap	Rho GTPase activating protein 32	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-115312649-1	chr9	115312549	115312749	+	559.0	f1_c57bl6.idr	Intergenic	Intergenic	-2228.0	NM_024222	68292.0	Mm.296158	NM_024222	ENSMUSG00000032437	Stt3b	1300006C19Rik|Simp	STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-22402668-3	chr10	22402581	22402781	+	889.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028580)	promoter-TSS (NR_028580)	-132.0	NR_028580	100038752.0	Mm.392859	NR_028580	ENSMUSG00000096937	Gm10825	-	predicted gene 10825	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-29500111-2	chr19	29500011	29500211	+	760.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21876.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-53236336-4	chr18	53236235	53236435	+	844.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR30D2_MM|LTR|ERV1	-9327.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102244512-2	chr12	102244412	102244612	+	569.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172152, intron 12 of 16)	(TG)n|Simple_repeat|Simple_repeat	-38562.0	NM_177620	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-29650272-3	chr2	29650179	29650379	+	861.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054050, intron 1 of 23)	L2a|LINE|L2	30559.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-63969529-1	chr15	63969429	63969629	+	637.0	f0_balb.idr	intron (NM_001360038, intron 2 of 11)	URR1B|DNA|hAT-Charlie	28537.0	NM_001360035	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-96625788-3	chr10	96625673	96625873	+	653.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8772.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-69037917-4	chr8	69037810	69038010	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_153054, exon 17 of 17)	3' UTR (NM_153054, exon 17 of 17)	-50826.0	NM_007509	11966.0	Mm.249096	NM_007509	ENSMUSG00000006273	Atp6v1b2	AI194269|AI790362|Atp6b2|HO57|R74844	ATPase, H+ transporting, lysosomal V1 subunit B2	protein-coding	4.15066360699472	3.97901532864888	3.61113624556002	4.0005790187687	4.04511358082819	3.21967810529904	3.94910077948803	4.45818593228651	0.063262067481075	0.894177270205273	0.998431161219273
Merged-chr11-44539893-2	chr11	44539857	44540057	+	726.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166553, intron 3 of 5)	MT2B|LTR|ERVL	20580.0	NM_001166553	74315.0	Mm.156771	NM_028862	ENSMUSG00000019189	Rnf145	3732413I11Rik|TMRF1	ring finger protein 145	protein-coding	0.83758150445452	0.901889235662428	0.334448623208625	0.33034676759597	1.03780372598366	0.341020250819852	0.335626310528185	0.331061350047677	-0.381238035014456	0.851702612287676	1
Merged-chr2-126515219-4	chr2	126515113	126515313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx10|LINE|L1	-15366.0	NM_001359975	241633.0	Mm.222235	NM_001080944	ENSMUSG00000060131	Atp8b4	Im	ATPase, class I, type 8B, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-82939738-1	chr6	82939638	82939838	+	549.0	f1_balb.idr	promoter-TSS (NM_011350)	promoter-TSS (NM_011350)	31.0	NM_001308374	20355.0	Mm.270543	NM_011350	ENSMUSG00000000627	Sema4f	Sema W	sema domain, immunoglobulin domain (Ig), TM domain, and short cytoplasmic domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-16885923-2	chr6	16885834	16886034	+	635.5	f0_balb.idr|f1_c57bl6.idr	intron (NM_031198, intron 1 of 6)	intron (NM_031198, intron 1 of 6)	12507.0	NM_031198	21426.0	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding	1.67777284253625	2.70940654713839	1.56147392444979	1.89592925678269	1.43909313450159	1.23110212961045	0.933503591299684	0.912311203409842	-2.9329101559733	0.0171489345628429	0.160160547653079
Merged-chr3-103851088-4	chr3	103850936	103851136	+	946.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142960, intron 3 of 3)	intron (NM_001142960, intron 3 of 3)	-8759.0	NR_104070	19260.0	Mm.395	NM_008979	ENSMUSG00000027843	Ptpn22	70zpep|PEP|Ptpn8	protein tyrosine phosphatase, non-receptor type 22 (lymphoid)	protein-coding	3.36669891903553	3.28244705399429	2.22269808594648	2.59198949216213	3.49470147910524	3.30649720523055	1.81157005220001	1.97757515716402	-0.140374212572805	0.860493614529889	0.998431161219273
Merged-chr7-80751101-1	chr7	80751001	80751201	+	572.0	f1_c57bl6.idr	intron (NM_016721, intron 14 of 37)	B4A|SINE|B4	52230.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	0.207929603573537	0.322851468395823	0.380924359659869	-0.109221381095476	-0.112963586559502	-0.102239185605668	-0.105773274527499	-0.108755321893502	-3.76619915995177	0.102666958888109	1
Merged-chr8-22809720-2	chr8	22809620	22809820	+	854.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4066.0	NM_001122820	64933.0	Mm.390023	NM_029505	ENSMUSG00000031539	Ap3m2	5830445E16Rik|AP-3B	adaptor-related protein complex 3, mu 2 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-120563803-4	chr2	120563677	120563877	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011743)	promoter-TSS (NM_011743)	82.0	NM_011743	20402.0	Mm.485295	NM_011743	ENSMUSG00000027288	Zfp106	Cd-1|D2Dcr28|EyeLinc12|H3a|Sh3bp3|Znf106|sirm|zfp-106	zinc finger protein 106	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-94678394-2	chr8	94678294	94678494	+	676.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026385, intron 2 of 3)	intron (NM_026385, intron 2 of 3)	11303.0	NM_024269	107566.0	Mm.393247	NM_024191	ENSMUSG00000031776	Arl2bp	1700010P10Rik|1700027H16Rik|6330544B05Rik|AI482273|AI849834|BART|Bart1	ADP-ribosylation factor-like 2 binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59017633-3	chr15	59017535	59017735	+	794.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144800, intron 3 of 14)	MLT1A0|LTR|ERVL-MaLR	64391.0	NM_001146180	211401.0	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-86006716-1	chr8	86006616	86006816	+	811.0	f0_balb.idr	intron (NM_199446, intron 15 of 31)	MYSERV-int|LTR|ERVK	165714.0	NM_199446	102093.0	Mm.237296	NM_199446	ENSMUSG00000036879	Phkb	AI463271	phosphorylase kinase beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-143584921-2	chr5	143584821	143585021	+	560.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2B|LTR|ERVL	36215.0	NM_026050	67238.0	Mm.383219	NM_026050	ENSMUSG00000083012	Fam220a	1500026F15Rik|2810453I06Rik|AW047776|Acpin1|Sipar	family with sequence similarity 220, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-90759877-1	chr5	90759777	90759977	+	643.0	f1_c57bl6.idr	intron (NM_009141, intron 2 of 3)	intron (NM_009141, intron 2 of 3)	579.0	NM_009141	20311.0	Mm.4660	NM_009141	ENSMUSG00000029371	Cxcl5	AMCF-II|Cxcl6|ENA-78|GCP-2|LIX|Scyb5|Scyb6	chemokine (C-X-C motif) ligand 5	protein-coding	-0.713954744322968	-0.34242078918482	-0.706885481759894	-0.0716654640979502	-0.713298816190459	-0.702660950467416	-0.706125309762146	-0.709079600247892	-3.2587013692729	0.254747393114491	1
Merged-chr5-135491593-2	chr5	135491493	135491693	+	912.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146001, intron 1 of 30)	intron (NM_146001, intron 1 of 30)	53529.0	NM_146001	215114.0	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-17182349-4	chr16	17182241	17182441	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009456, intron 1 of 3)	ORR1D1|LTR|ERVL-MaLR	19151.0	NM_009456	22195.0	Mm.3074	NM_009456	ENSMUSG00000038965	Ube2l3	C79827|UbcM4|Ubce7	ubiquitin-conjugating enzyme E2L 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-66741956-3	chr10	66741864	66742064	+	771.722229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	178420.0	NR_138560	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-18714341-2	chr19	18714241	18714441	+	866.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177640, intron 1 of 1)	intron (NM_177640, intron 1 of 1)	1105.0	NM_177640	225995.0	Mm.28101	NM_177640	ENSMUSG00000047044	D030056L22Rik	-	RIKEN cDNA D030056L22 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99625882-4	chr7	99625747	99625947	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001195529, exon 1 of 1)	exon (NM_001195529, exon 1 of 1)	1256.0	NM_001195529	100503386.0	Mm.180719	NM_001195529	ENSMUSG00000096606	Tpbgl	EG245190|Gm4980	trophoblast glycoprotein-like	protein-coding	0.00926482106861307	0.709398614928164	0.0545060922316081	0.0376165185981982	-0.136563642451519	-0.120394370514761	0.0593113859344877	-0.130137745051026	-3.00022583091964	0.147366308143669	1
Merged-chr7-126777760-2	chr7	126777660	126777860	+	815.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026875, intron 1 of 4)	intron (NM_026875, intron 1 of 4)	785.0	NM_025347	66090.0	Mm.27114	NM_025347	ENSMUSG00000042675	Ypel3	0610043B10Rik|1190001G19Rik|Suap	yippee like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85602468-2	chr12	85602368	85602568	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205053, intron 1 of 3)	intron (NM_001205053, intron 1 of 3)	2450.0	NM_001205053	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-106964860-1	chr8	106964760	106964960	+	670.333313	f0_balb.idr	intron (NM_009229, intron 1 of 6)	intron (NM_009229, intron 1 of 6)	29110.0	NM_009229	20650.0	Mm.30228	NM_009229	ENSMUSG00000041308	Sntb2	Snt2	syntrophin, basic 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-60897421-1	chr8	60897321	60897521	+	650.5	f0_balb.idr	intron (NM_028299, intron 4 of 7)	LTR67B|LTR|ERVL	7028.0	NM_001357270	72612.0	Mm.25263	NM_028299	ENSMUSG00000038005	Hpf1	2700029M09Rik|C230006B22Rik|C4orf27	histone PARylation factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-79520904-4	chr11	79520773	79520973	+	981.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077496, intron 1 of 1)	intron (NM_001077496, intron 1 of 1)	2889.0	NM_001077496	216984.0	Mm.439665	NM_001077496	ENSMUSG00000093938	Evi2b	Evi-2|Evi2	ecotropic viral integration site 2b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132573928-3	chr4	132573864	132574064	+	924.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081211, intron 1 of 1)	(TG)n|Simple_repeat|Simple_repeat	9897.0	NM_001081211	19204.0	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27038447-4	chr17	27038347	27038547	+	953.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9188.0	NM_027544	70772.0	Mm.440437	NM_027544	ENSMUSG00000048731	Ggnbp1	0610031G08Rik|mdf	gametogenetin binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81606212-4	chr10	81606115	81606315	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_030677)	promoter-TSS (NR_030677)	-93.0	NR_030677	268319.0	Mm.131825	NM_001033363	ENSMUSG00000074862	BC025920	-	zinc finger protein pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3926546-2	chr19	3926446	3926646	+	879.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_026316, intron 1 of 9)	intron (NM_026316, intron 1 of 9)	3170.0	NM_026316	67689.0	Mm.109341	NM_026316	ENSMUSG00000024885	Aldh3b1	1700001N19Rik|ALDH4|ALDH7	aldehyde dehydrogenase 3 family, member B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-38516991-2	chr5	38516891	38517091	+	714.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14839.0	NM_145559	117591.0	Mm.260137	NM_145559	ENSMUSG00000005107	Slc2a9	Glut9|SLC2A9B|SLC2a9A	solute carrier family 2 (facilitated glucose transporter), member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131511274-4	chr1	131511159	131511359	+	939.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081011, intron 2 of 22)	intron (NM_001081011, intron 2 of 22)	16102.0	NM_001081011	14270.0	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122048675-2	chr5	122048575	122048775	+	717.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007804)	promoter-TSS (NM_007804)	-850.0	NM_007804	13048.0	Mm.156172	NM_007804	ENSMUSG00000042589	Cux2	1700051K22Rik|Cutl2|Cux-2	cut-like homeobox 2	protein-coding	-0.960356745253565	-0.944632716951783	-0.954778622669631	-0.429329592755357	-0.690970668601764	-0.942053516937827	-0.953840318496883	-0.956512928848077	-1.03243114258619	0.744669050894141	1
Merged-chr15-96286798-4	chr15	96286682	96286882	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175251)	promoter-TSS (NM_175251)	-740.0	NM_175251	77044.0	Mm.17166	NM_175251	ENSMUSG00000033237	Arid2	1700124K17Rik|4432409D24Rik|BAF200|zipzap/p200	AT rich interactive domain 2 (ARID, RFX-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-59130570-6	chr3	59130513	59130713	+	891.255554	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001287124, exon 1 of 2)	5' UTR (NM_001287124, exon 1 of 2)	149.0	NM_001287124	140795.0	Mm.439021	NM_133200	ENSMUSG00000036381	P2ry14	A330108O13Rik|Gpr105|P2Y14	purinergic receptor P2Y, G-protein coupled, 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-7876088-2	chr15	7875988	7876188	+	965.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081402, intron 17 of 17)	intron (NM_001081402, intron 17 of 17)	60538.0	NM_001301357	14573.0	Mm.4679	NM_010275	ENSMUSG00000022144	Gdnf	AI385739|ATF	glial cell line derived neurotrophic factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-14355210-2	chr14	14355110	14355310	+	649.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008369, intron 11 of 11)	intron (NM_008369, intron 11 of 11)	8715.0	NM_008369	16188.0	Mm.425857	NM_008369	ENSMUSG00000068758	Il3ra	CD123|CDw123|SUT-1	interleukin 3 receptor, alpha chain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-21452034-1	chr5	21451934	21452134	+	671.0	f0_balb.idr	intron (NM_177869, intron 5 of 7)	intron (NM_177869, intron 5 of 7)	27131.0	NM_177869	330050.0	Mm.40655	NM_177869	ENSMUSG00000047221	Fam185a	4631428I10|AI847670	family with sequence similarity 185, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-93301813-2	chr13	93301713	93301913	+	784.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-1944.0	NM_147176	26556.0	Mm.37533	NM_011982	ENSMUSG00000007617	Homer1	PSD-Zip45|SYN47|Ves-1|homer-1|vesl-1	homer scaffolding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-42962879-3	chr15	42962785	42962985	+	795.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	207933.0	NM_001357957	239405.0	Mm.193274	NM_172815	ENSMUSG00000051920	Rspo2	2610028F08Rik|AA673245|D430027K22|ftls	R-spondin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-104980710-2	chr5	104980610	104980810	+	617.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_030239, intron 1 of 15)	intron (NM_030239, intron 1 of 15)	2007.0	NM_030239	27405.0	Mm.389663	NM_030239	ENSMUSG00000029299	Abcg3	Abcp2|Mxr2	ATP binding cassette subfamily G member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-73472387-2	chr13	73472287	73472487	+	652.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_145376, intron 1 of 13)	intron (NM_145376, intron 1 of 13)	5004.0	NM_145376	210992.0	Mm.284649	NM_145376	ENSMUSG00000021608	Lpcat1	2900035H07Rik|Aytl2|BB137372|BC005662|C87117|LPCAT|rd11	lysophosphatidylcholine acyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-26974730-2	chr2	26974630	26974830	+	632.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001322, intron 2 of 28)	intron (NM_001001322, intron 2 of 28)	1314.0	NM_001290465	279028.0	Mm.330084	NM_001001322	ENSMUSG00000014852	Adamts13	ADAM-TS13|ADAMTS-13|Gm710|vWF-CP	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-166799262-2	chr1	166799162	166799362	+	674.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2c|LINE|L2	-117417.0	NM_001347135	240894.0	Mm.246610	NM_172844	ENSMUSG00000026560	Fmo9	4831428F09Rik	flavin containing monooxygenase 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-64343442-4	chr1	64343319	64343519	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-189385.0	NM_009952	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28832383-3	chr7	28832281	28832481	+	901.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_016772)	TTS (NM_016772)	-1413.0	NM_010706	16855.0	Mm.210336	NM_010706	ENSMUSG00000053964	Lgals4	gal-4	lectin, galactose binding, soluble 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21160572-2	chr9	21160472	21160672	+	810.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5142.0	NM_183408	18577.0	Mm.191749	NM_019798	ENSMUSG00000032177	Pde4a	D9Ertd60e|Dpde2	phosphodiesterase 4A, cAMP specific	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-98142910-2	chr3	98142810	98143010	+	568.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_010928, exon 31 of 34)	exon (NM_010928, exon 31 of 34)	-17724.0	NM_027665	71078.0	Mm.50711	NM_027665	ENSMUSG00000043468	Adam30	4933424D07Rik|svph4	a disintegrin and metallopeptidase domain 30	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-118846083-2	chr3	118845983	118846183	+	704.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_170778, intron 8 of 22)	intron (NM_170778, intron 8 of 22)	283903.0	NM_170778	99586.0	Mm.27907	NM_170778	ENSMUSG00000033308	Dpyd	AI315208|DHPDHase|DPD|E330028L06Rik	dihydropyrimidine dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24743022-2	chr17	24742922	24743122	+	713.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001346668)	TTS (NM_001346668)	6429.0	NM_001346668	27361.0	Mm.28212	NM_013759	ENSMUSG00000075705	Msrb1	D17Wsu82e|SELX|SelR|Sepr|Sepx1	methionine sulfoxide reductase B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-48322599-2	chr7	48322499	48322699	+	769.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17A2|LTR|ERVK	-65927.0	NM_207539	404240.0	Mm.357942	NM_207539	ENSMUSG00000050870	Mrgprb8	MrgB8	MAS-related GPR, member B8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-78507396-4	chr1	78507275	78507475	+	958.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3685.0	NM_026713	68393.0	Mm.41325	NM_026713	ENSMUSG00000012187	Mogat1	0610030A14Rik|1110064N14Rik|Dgat2l|Dgat2l1|MGAT1|WI1-2612I11.1|mDC2	monoacylglycerol O-acyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-88583830-2	chr17	88583730	88583930	+	797.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028658, intron 20 of 21)	intron (NM_028658, intron 20 of 21)	-42725.0	NM_029858	77057.0	Mm.482203	NM_029858	ENSMUSG00000033855	Ston1	4921524J06Rik|C86231|Salf|Sblf	stonin 1	protein-coding	-2.05752322593321	-2.15521190974092	-2.16307242109104	-2.16952927915413	-2.17938029103484	-2.15350850414045	-2.16129297361887	-2.16837350464794	-0.683654500252594	0.846597994014493	1
Merged-chr7-30308675-4	chr7	30308580	30308780	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198027)	promoter-TSS (NM_198027)	-73.0	NM_198027	233065.0	Mm.276277	NM_198027	ENSMUSG00000042831	Alkbh6	AI839550|Abh6|C130099A02	alkB homolog 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-146949530-2	chr5	146949441	146949641	+	837.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025652, intron 1 of 8)	B1_Mus2|SINE|Alu	884.0	NM_025652	66596.0	Mm.196528	NM_025652	ENSMUSG00000016503	Gtf3a	2010015D03Rik|2610111I01Rik|5330403M05Rik	general transcription factor III A	protein-coding	0.812952469715656	1.48531890667903	1.79911320568469	2.07761050644901	0.816634446930632	1.64492659694942	0.855506791285042	1.39262024643809	-1.34697876356139	0.326943246216921	0.829199211128231
Merged-chr9-20888829-2	chr9	20888729	20888929	+	655.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145610, intron 2 of 10)	RSINE1|SINE|B4	654.0	NM_145610	235036.0	Mm.2930	NM_145610	ENSMUSG00000004100	Ppan	A230087P06Rik|SSF1	peter pan homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-128856431-4	chr6	128856338	128856538	+	998.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001254946, intron 2 of 2)	RMER17C-int|LTR|ERVK	-30123.0	NM_030599	80782.0	Mm.6180	NM_030599	ENSMUSG00000079298	Klrb1b	Klrb1d|Ly55b|Ly55d|NKR-P1B|NKR-P1D|Nkrp1-b|Nkrp1b|Nkrp1d|ly-55b|ly-55d	killer cell lectin-like receptor subfamily B member 1B	protein-coding	2.78559944002737	3.01109723551715	3.49517887066122	3.14568298557097	3.39595106047169	3.91976669239328	3.35470735738218	3.49102555910788	0.683726707195835	0.226618687906178	0.719685287850272
Merged-chr14-120479509-4	chr14	120479403	120479603	+	943.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029519, intron 1 of 1)	intron (NM_029519, intron 1 of 1)	1042.0	NM_029519	76108.0	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-12089364-4	chr4	12089243	12089443	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356563)	promoter-TSS (NM_001356563)	-27.0	NM_001356563	77604.0	Mm.474129	NM_198957	ENSMUSG00000052137	Rbm12b2	AV299215|C430048L16Rik|Rbm12bb	RNA binding motif protein 12 B2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-99328516-3	chr5	99328411	99328611	+	746.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 3 of 3)	MTE2a|LTR|ERVL-MaLR	-75584.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-120151899-4	chr6	120151808	120152008	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016718, intron 1 of 3)	ORR1F|LTR|ERVL-MaLR	-41915.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-81136173-4	chr13	81136068	81136268	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 87 of 89)	intron (NM_054053, intron 87 of 89)	172094.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-143473863-2	chr5	143473763	143473963	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144915, intron 3 of 14)	B4A|SINE|B4	9370.0	NM_144915	231871.0	Mm.469963	NM_144915	ENSMUSG00000039206	Daglb	E330036I19Rik	diacylglycerol lipase, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-95963868-2	chr10	95963768	95963968	+	771.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001932, intron 1 of 28)	ORR1B2|LTR|ERVL-MaLR	23205.0	NM_001001932	216238.0	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34981976-4	chr17	34981879	34982079	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030597)	promoter-TSS (NM_030597)	125.0	NM_001204274	27756.0	Mm.165735	NM_030597	ENSMUSG00000007050	Lsm2	D17H6S56E-2|D17H6S56E2|Dmapl|Dmpkap|G7b|Sm-X5|SmX5|snRNP	LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71704113-3	chr17	71704011	71704211	+	894.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177087, intron 10 of 19)	intron (NM_177087, intron 10 of 19)	30850.0	NM_177087	320159.0	Mm.187372	NM_177087	ENSMUSG00000045761	Togaram2	4632412N22Rik|Fam179a	TOG array regulator of axonemal microtubules 2	protein-coding	0.174053679104643	-0.0788758103599124	-0.0840955694181752	0.633364983716759	-0.0938232571034933	-0.0776996123498419	-0.0829440415570969	0.455341451793577	-0.908550325270502	0.693166897652561	1
Merged-chr3-88664306-4	chr3	88664191	88664391	+	960.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11A|LTR|ERVK	-11149.0	NM_181817	242093.0	Mm.269130	NM_181817	ENSMUSG00000049741	Rxfp4	GPCR142|Gpr100|Rln3r2|SALPR	relaxin family peptide receptor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-110787464-3	chr7	110787352	110787552	+	796.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009667, intron 2 of 14)	ORR1D1|LTR|ERVL-MaLR	14848.0	NM_009667	11717.0	Mm.3238	NM_009667	ENSMUSG00000005686	Ampd3	-	adenosine monophosphate deaminase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-5268130-5	chr12	5267960	5268160	+	820.299988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164493, intron 2 of 13)	intron (NM_001164493, intron 2 of 13)	107622.0	NM_001164493	208439.0	Mm.388281	NM_001164493	ENSMUSG00000020627	Klhl29	A230106N14Rik|Gm68|Kbtbd9|mKIAA1921	kelch-like 29	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-18290970-1	chr9	18290870	18291070	+	543.0	f1_c57bl6.idr	Intergenic	LTRIS2|LTR|ERV1	-1297.0	NM_025844	66917.0	Mm.103534	NM_025844	ENSMUSG00000001774	Chordc1	1110001O09Rik|AA409036|Chp-1|morgana	cysteine and histidine-rich domain (CHORD)-containing, zinc-binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-84442701-3	chr14	84442616	84442816	+	554.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001013753)	promoter-TSS (NM_001013753)	-847.0	NM_001013753	219228.0	Mm.153643	NM_001013753	ENSMUSG00000035566	Pcdh17	C030033F14Rik|Gm78	protocadherin 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-55835976-4	chr16	55835893	55836093	+	962.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030612, intron 2 of 13)	intron (NM_030612, intron 2 of 13)	2648.0	NM_030612	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-20840077-3	chr5	20839997	20840197	+	761.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172992, intron 2 of 17)	intron (NM_172992, intron 2 of 17)	42027.0	NM_172992	68770.0	Mm.86410	NM_172992	ENSMUSG00000039987	Phtf2	1110054G21Rik|9530062N20Rik|AI447096|C77923	putative homeodomain transcription factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-76407721-2	chr16	76407621	76407821	+	561.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33894.0	NM_001358238	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-56063112-2	chr16	56063012	56063212	+	896.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360073, intron 1 of 24)	intron (NM_001360073, intron 1 of 24)	5582.0	NM_001360073	66315.0	Mm.255784	NM_025483	ENSMUSG00000052917	Senp7	2410152H17Rik|2810413I22Rik|2900036C23Rik|6030449K19Rik|AI790676	SUMO1/sentrin specific peptidase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85990337-2	chr12	85990237	85990437	+	982.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347395, intron 29 of 32)	intron (NM_001347395, intron 29 of 32)	88704.0	NM_009368	21809.0	Mm.3992	NM_009368	ENSMUSG00000021253	Tgfb3	TGF-beta-3|Tgfb-3	transforming growth factor, beta 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167324329-1	chr2	167324229	167324429	+	553.0	f1_balb.idr	intron (NM_019835, intron 1 of 8)	intron (NM_019835, intron 1 of 8)	24849.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117965640-2	chr11	117965540	117965740	+	673.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_007707)	TTS (NM_007707)	3726.0	NM_007707	12702.0	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-40087843-4	chr10	40087725	40087925	+	819.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 1 of 5)	L1MC3|LINE|L1	54429.0	NM_028247	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-99306222-4	chr12	99306124	99306324	+	728.150024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183186, intron 3 of 5)	intron (NM_183186, intron 3 of 5)	-143416.0	NR_038130	67639.0	Mm.87374	NR_038130	ENSMUSG00000113210	4930474N09Rik	-	RIKEN cDNA 4930474N09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171232580-2	chr1	171232480	171232680	+	774.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_010185, intron 1 of 4)	B1_Mus1|SINE|Alu	1769.0	NM_010185	14127.0	Mm.22673	NM_010185	ENSMUSG00000058715	Fcer1g	AI573376|CD23|FcR-gamma|FcR[g]|FcRgamma|Fce1g|FcepsilonRI|Ly-50	Fc receptor, IgE, high affinity I, gamma polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100479768-2	chr7	100479668	100479868	+	696.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009464, intron 2 of 6)	intron (NM_009464, intron 2 of 6)	6777.0	NM_009464	22229.0	Mm.6254	NM_009464	ENSMUSG00000032942	Ucp3	AI645527|Slc25a9|UCP-3	uncoupling protein 3 (mitochondrial, proton carrier)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165852683-4	chr2	165852611	165852811	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252584, intron 2 of 22)	ORR1E|LTR|ERVL-MaLR	5462.0	NM_001252585	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	1.72122800966763	2.45515420260587	3.90258477945706	2.28443636795378	1.90061262526815	2.17556621165436	1.15870077639211	1.40953480120475	-2.39692762291035	0.0136583998736295	0.13594884435797
Merged-chr17-5485512-2	chr17	5485412	5485612	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2443.0	NR_073378	666919.0		NR_073378		Gm8363	EG666919	non-SMC condensin II complex, subunit H2 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71312758-2	chr17	71312658	71312858	+	561.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	IMPB_01|Satellite|Satellite	-1202.0	NM_001357336	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-10980558-2	chr14	10980458	10980658	+	674.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001308285, intron 2 of 9)	intron (NM_001308285, intron 2 of 9)	181477.0	NM_010210	14198.0	Mm.397619	NM_010210	ENSMUSG00000060579	Fhit	AW045638|Fra14A2	fragile histidine triad gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128094813-4	chr10	128094714	128094914	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054078, intron 1 of 29)	intron (NM_054078, intron 1 of 29)	2031.0	NM_054078	116848.0	Mm.252213	NM_054078	ENSMUSG00000040054	Baz2a	AA415431|C030005G16Rik|C78388|Tip5|Walp3|mKIAA0314	bromodomain adjacent to zinc finger domain, 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-122013196-2	chr14	122013096	122013296	+	676.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026861, intron 8 of 8)	intron (NM_026861, intron 8 of 8)	-21478.0	NM_001037744	223262.0	Mm.297637	NM_001037744	ENSMUSG00000071229	Timm8a2	-	translocase of inner mitochondrial membrane 8A2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-102407333-2	chr15	102407233	102407433	+	722.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013672, intron 1 of 5)	PB1D7|SINE|Alu	1017.0	NM_013672	20683.0	Mm.4618	NM_013672	ENSMUSG00000001280	Sp1	1110003E12Rik|AA450830|AI845540|Sp1-1	trans-acting transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-26932692-1	chr2	26932592	26932792	+	737.0	f0_balb.idr	intron (NM_011512, intron 1 of 5)	intron (NM_011512, intron 1 of 5)	819.0	NM_011512	20932.0	Mm.300594	NM_011512	ENSMUSG00000014867	Surf4	AL033340|AL033373|Surf-4	surfeit gene 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-192712086-1	chr1	192711986	192712186	+	569.0	f1_c57bl6.idr	intron (NM_144881, intron 7 of 11)	intron (NM_144881, intron 7 of 11)	59133.0	NM_144881	226861.0	Mm.145857	NM_144881	ENSMUSG00000037375	Hhat	2810432O22Rik|AI462858|AP-2CRE|Skn|Tg(TFAP2A-cre)1Will	hedgehog acyltransferase	protein-coding	0.626427853458379	0.867518148672394	0.379261962682124	0.37406520021322	0.926514749784841	0.387519283559506	0.834014675106759	0.676129241800418	0.883802464682807	0.612923098044371	1
Merged-chr18-64887218-4	chr18	64887097	64887297	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001114386)	promoter-TSS (NM_001114386)	-559.0	NM_001114386	83814.0	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-82233528-2	chr12	82233428	82233628	+	673.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001167983, intron 1 of 23)	intron (NM_001167983, intron 1 of 23)	63512.0	NM_001167983	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-45692973-4	chr2	45692887	45693087	+	897.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3618.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-35433952-4	chr8	35433785	35433985	+	990.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58144.0	NM_177741	244416.0	Mm.247126	NM_177741	ENSMUSG00000046794	Ppp1r3b	6430576E21|AW821953|GL|PTG	protein phosphatase 1, regulatory (inhibitor) subunit 3B	protein-coding	1.24323219525684	2.22399772953682	1.86891593934949	0.917597914876617	1.25301412692646	1.57095828520039	1.16651203106099	1.46589593056239	-0.991147718154748	0.41088035986768	0.894256659801134
Merged-chr11-106704156-4	chr11	106704050	106704250	+	968.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305158, intron 2 of 14)	intron (NM_001305158, intron 2 of 14)	11131.0	NM_001305158	18613.0	Mm.343951	NM_008816	ENSMUSG00000020717	Pecam1	C85791|Cd31|PECAM-1|Pecam	platelet/endothelial cell adhesion molecule 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-83682100-4	chr17	83681980	83682180	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24083.0	NM_001171054	116871.0	Mm.277668	NM_054082	ENSMUSG00000055817	Mta3	1110002J22Rik|mKIAA1266	metastasis associated 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28397790-2	chr7	28397608	28397808	+	670.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_019458, intron 11 of 13)	intron (NM_019458, intron 11 of 13)	4712.0	NM_019458	54624.0	Mm.7916	NM_019458	ENSMUSG00000003437	Paf1	5730511K23Rik|AA675045	Paf1, RNA polymerase II complex component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129491870-2	chr2	129491783	129491983	+	754.791626	f0_balb.idr|f1_balb.idr	intron (NM_177653, intron 1 of 6)	RMER13A2|LTR|ERVK	44719.0	NM_177653	228592.0	Mm.452175	NM_177653	ENSMUSG00000043727	F830045P16Rik	Sirpb3	RIKEN cDNA F830045P16 gene	protein-coding	3.22736335730413	2.46109258330748	2.13539725425589	1.50378132105937	5.3553096158563	3.99846582740914	4.27268133841026	3.93214436806068	2.9938182331612	4.2589897752919e-06	0.000222171127495444
Merged-chr10-49050176-4	chr10	49050068	49050268	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	737769.0	NM_001358866	14806.0	Mm.185993	NM_010349	ENSMUSG00000056073	Grik2	AW124492|C130030K03Rik|GluK2|Glur-6|Glur6|Glurbeta2	glutamate receptor, ionotropic, kainate 2 (beta 2)	protein-coding	0.89688231384608	0.621770388633138	0.610325541198539	1.20759729513688	1.41435568922523	0.848218212463096	0.61286403112637	1.59012137849516	1.4264818953691	0.36041574428228	0.856460911964629
Merged-chr3-139673465-2	chr3	139673365	139673565	+	648.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198659, intron 12 of 13)	Lx9|LINE|L1	107294.0	NR_153353	102635321.0	Mm.121751	NR_153353	ENSMUSG00000106505	Gm32693	-	predicted gene, 32693	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-41461855-3	chr9	41461745	41461945	+	878.805542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131928, intron 3 of 4)	intron (NR_131928, intron 3 of 4)	-13048.0	NR_131931	73144.0	Mm.38166	NM_001033153	ENSMUSG00000074415	3110039I08Rik	2610203C20Rik|AI848448|D230004N17Rik|D3Mgi9|Mir100hg	RIKEN cDNA 3110039I08 gene	ncRNA	2.11563276221202	2.91261321468806	1.43595415299666	2.99558111912508	2.93774000220266	3.44200013098783	3.10794197940128	1.67539669246369	0.781788340563948	0.365702457642461	0.861036332257394
Merged-chr15-27958097-2	chr15	27957997	27958197	+	643.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081302, intron 1 of 56)	intron (NM_001081302, intron 1 of 56)	67751.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-58772239-3	chr6	58772154	58772354	+	739.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59211.0	NM_001361967	73998.0	Mm.191892	NM_028705	ENSMUSG00000029804	Herc3	5730409F18Rik|AI646603|mKIAA0032	hect domain and RLD 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-56811713-4	chr19	56811595	56811795	+	820.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_170757, intron 1 of 14)	intron (NM_170757, intron 1 of 14)	1988.0	NM_170757	213993.0	Mm.469677	NM_170757	ENSMUSG00000035173	Ccdc186	1810028B20Rik|A630007B06Rik|AI159700|Otg1	coiled-coil domain containing 186	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72899248-8	chr6	72899122	72899322	+	992.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347231)	promoter-TSS (NM_001347231)	70.0	NM_001347231	74287.0	Mm.29194	NM_019715	ENSMUSG00000055239	Kcmf1	1700094M07Rik|Debt91|Pmcf	potassium channel modulatory factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-112342506-1	chr5	112342406	112342606	+	577.0	f0_balb.idr	promoter-TSS (NM_138646)	promoter-TSS (NM_138646)	534.0	NM_001359388	70118.0	Mm.172947	NM_027323	ENSMUSG00000029346	Srrd	2810002G02Rik|Srr1	SRR1 domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101042860-2	chr15	101042760	101042960	+	861.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011323, exon 26 of 26)	3' UTR (NM_011323, exon 26 of 26)	11539.0	NM_001214911	668225.0	Mm.385011	NM_001214911	ENSMUSG00000095440	Fignl2	EG668225	fidgetin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-106972923-5	chr8	106972820	106973020	+	951.675537	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009229, intron 1 of 6)	intron (NM_009229, intron 1 of 6)	37170.0	NM_009229	20650.0	Mm.30228	NM_009229	ENSMUSG00000041308	Sntb2	Snt2	syntrophin, basic 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-58907361-4	chr2	58907283	58907483	+	770.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362394, intron 10 of 13)	intron (NM_001362394, intron 10 of 13)	152199.0	NM_029692	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-127080940-4	chr2	127080824	127081024	+	829.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026678, intron 2 of 7)	intron (NM_026678, intron 2 of 7)	10267.0	NM_026678	109778.0	Mm.22028	NM_026678	ENSMUSG00000001999	Blvra	0610006A11Rik|2500001N03Rik|Blvr	biliverdin reductase A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-86025313-2	chr7	86025213	86025413	+	562.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	-63831.0	NM_001105187	546980.0	Mm.469905	NM_001105187	ENSMUSG00000090774	Vmn2r74	EG546980	vomeronasal 2, receptor 74	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-71499118-2	chr2	71499018	71499218	+	723.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025633, intron 1 of 9)	intron (NM_025633, intron 1 of 9)	-30327.0	NM_010053	13390.0	Mm.475101	NM_010053	ENSMUSG00000041911	Dlx1	Dlx|Dlx-1	distal-less homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-12649048-2	chr13	12648948	12649148	+	778.666626	f1_balb.idr|f1_c57bl6.idr	intron (NR_003568, intron 1 of 6)	intron (NR_003568, intron 1 of 6)	1347.0	NR_003568	664862.0	Mm.415635	NR_003568		Gpr137b-ps	2310041G17Rik	G protein-coupled receptor 137B, pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-58461470-2	chr16	58461370	58461570	+	783.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356484, intron 13 of 15)	intron (NM_001356484, intron 13 of 15)	52935.0	NM_028523	73379.0	Mm.373589	NM_028523	ENSMUSG00000035107	Dcbld2	1700055P21Rik|AW146002|CLCP1|Esdn	discoidin, CUB and LCCL domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167407465-2	chr2	167407365	167407565	+	615.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	HAL1|LINE|L1	-14245.0	NM_148929	77031.0	Mm.278924	NM_148929	ENSMUSG00000039463	Slc9a8	1200006P13Rik|6430709P13Rik|AI182282|NHE-8|NHE8	solute carrier family 9 (sodium/hydrogen exchanger), member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-73737132-3	chr12	73737009	73737209	+	909.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008856, intron 10 of 13)	intron (NM_008856, intron 10 of 13)	152313.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-28481170-4	chr13	28481058	28481258	+	967.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045054, intron 7 of 7)	intron (NR_045054, intron 7 of 7)	229715.0	NR_105787	102466635.0		NR_105787	ENSMUSG00000099158	Mir6368	Gm27800|mmu-mir-6368	microRNA 6368	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-94275159-4	chr9	94275045	94275245	+	793.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	262936.0	NM_001033145	68861.0	Mm.258746	NM_001033145	ENSMUSG00000045414	1190002N15Rik	GoPro49|HASF	RIKEN cDNA 1190002N15 gene	protein-coding	3.50375021276678	3.54188980862327	4.49363963917468	3.48334301264166	2.7943357957783	2.33557175042206	3.04634539180582	3.50114920124459	-1.30183900277781	0.0304128940951015	0.239431695113535
Merged-chr11-107539191-2	chr11	107539091	107539291	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8769.0	NM_198298	78455.0	Mm.272047	NM_198298	ENSMUSG00000020721	Helz	3110078M01Rik|9430093I07Rik|9630002H22Rik|AI851979|DRHC	helicase with zinc finger domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141669793-2	chr4	141669693	141669893	+	741.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	A-rich|Low_complexity|Low_complexity	-5678.0	NM_001033150	69582.0	Mm.33220	NM_001033150	ENSMUSG00000028917	Plekhm2	2310034J19Rik|AI854247|mKIAA0842	pleckstrin homology domain containing, family M (with RUN domain) member 2	protein-coding	1.49108065294176	1.54433294817841	1.17294770790569	1.57282902020335	1.99912897917041	1.55594692031898	0.968857970582791	1.31674676092125	0.266320162782638	0.824582236261026	0.998431161219273
Merged-chr8-84226937-2	chr8	84226837	84227037	+	771.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172503, intron 5 of 13)	intron (NM_172503, intron 5 of 13)	10105.0	NM_172503	212168.0	Mm.117094	NM_172503	ENSMUSG00000035671	Zswim4	D330002I24|E130119J17Rik	zinc finger SWIM-type containing 4	protein-coding	1.31715795891705	0.593695755195216	0.584490547918957	1.13774212615657	0.855954877367087	1.11856965015834	1.07225676973945	0.578601365078989	-0.174378094393711	0.913184587854253	1
Merged-chr17-50503846-2	chr17	50503746	50503946	+	626.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5701.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-55404633-3	chr1	55404553	55404753	+	961.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1293.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	-2.18308165884198	-2.15547475440471	-2.16382331017202	-2.1706810624505	-2.18114370519566	-2.15366558754311	-2.03057248461154	-2.16945352807143	0.759018020146679	0.829933115115583	1
Merged-chr9-78489095-4	chr9	78488981	78489181	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7357.0	NM_010106	13627.0	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-59534053-4	chr4	59533943	59534143	+	880.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178164, intron 1 of 13)	intron (NM_178164, intron 1 of 13)	15321.0	NM_178164	230257.0	Mm.331640	NM_144904	ENSMUSG00000028382	Ptbp3	5830471K22Rik|AA407443|AI462022|AW107884|C86549|Rod1	polypyrimidine tract binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167058482-4	chr2	167058388	167058588	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033196, intron 2 of 13)	intron (NM_001033196, intron 2 of 13)	-4446.0	NR_138563	68949.0	Mm.391959	NM_001081005		Zfas1	1500012F01Rik|Zfos1	zinc finger, NFX1-type containing 1, antisense RNA 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123076281-4	chr5	123076166	123076366	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039723)	promoter-TSS (NM_001039723)	-9.0	NM_001039723	330189.0	Mm.391872	NM_001039723	ENSMUSG00000054434	Tmem120b	-	transmembrane protein 120B	protein-coding	3.33626610081985	2.9131489488665	3.88805561535603	2.45982172972626	3.29957976040731	2.93499886468479	3.34077353064042	2.47306761155033	-0.340871136109169	0.606370529613327	0.974576632476413
Merged-chr7-49246748-3	chr7	49246644	49246844	+	854.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_175272, exon 1 of 38)	5' UTR (NM_175272, exon 1 of 38)	555.0	NM_175272	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-34081290-4	chr3	34081197	34081397	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286972)	promoter-TSS (NM_001286972)	57.0	NM_001026211	67713.0	Mm.274266	NM_026332	ENSMUSG00000027679	Dnajc19	1810055D05Rik|AA959924|Tim14	DnaJ heat shock protein family (Hsp40) member C19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70848645-4	chr11	70848525	70848725	+	863.3875119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291143, intron 2 of 18)	B1_Mus2|SINE|Alu	3864.0	NM_001291142	54189.0	Mm.7087	NM_019400	ENSMUSG00000020817	Rabep1	Rab5ep|rabaptin-5|rabaptin-5alpha	rabaptin, RAB GTPase binding effector protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-24519025-2	chr16	24518925	24519125	+	947.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 3 of 12)	intron (NM_178665, intron 3 of 12)	-10289.0	NR_038091	624582.0	Mm.439775	NR_038091		Morf4l1-ps1	A730098P11Rik	mortality factor 4 like 1, pseudogene 1	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-64102126-3	chr15	64102052	64102252	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 25 of 28)	intron (NM_001276461, intron 25 of 28)	-41704.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	3.11181722309525	2.66809965019319	2.90148795597168	4.28353476523394	4.65112263287801	4.75963394323047	4.09317184484458	5.16640470308514	1.74399174375654	0.000702760829635179	0.0146894153901792
Merged-chr10-81298068-4	chr10	81297978	81298178	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293647, intron 1 of 17)	intron (NM_001293647, intron 1 of 17)	5115.0	NM_001146687	18717.0	Mm.24222	NM_008844	ENSMUSG00000034902	Pip5k1c	AI115456|AI835305|Pip5kIgamma	phosphatidylinositol-4-phosphate 5-kinase, type 1 gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105497049-4	chr8	105496957	105497157	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175160)	promoter-TSS (NM_175160)	-155.0	NM_175160	70796.0	Mm.100917	NM_175160	ENSMUSG00000039199	Zdhhc1	4432412D04Rik|DHHC-1	zinc finger, DHHC domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-149053087-4	chr5	149052973	149053173	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010439)	promoter-TSS (NM_010439)	-16.0	NM_010439	15289.0	Mm.207047	NM_010439	ENSMUSG00000066551	Hmgb1	HMG-1|Hmg1|SBP-1|p30	high mobility group box 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-17684031-4	chr10	17683935	17684135	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39193.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-77802664-2	chr9	77802564	77802764	+	658.916626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	48129.0	NM_010295	14629.0	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-67756353-3	chr5	67756263	67756463	+	615.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009727, intron 14 of 35)	intron (NM_009727, intron 14 of 35)	91068.0	NM_009727	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	1.77601831698867	0.879853682358409	0.859379992469019	0.843105226372101	2.03270284422676	1.94522312691399	0.863953829316531	2.07556224253999	2.04437990824437	0.146613172498036	0.596697708151776
Merged-chr15-73424993-2	chr15	73424893	73425093	+	739.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1802.0	NM_001358045	14083.0	Mm.254494	NM_007982	ENSMUSG00000022607	Ptk2	FADK 1|FAK|FRNK|Fadk|p125FAK	PTK2 protein tyrosine kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-140999497-4	chr7	140999398	140999598	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11246.0	NM_025378	66141.0	Mm.141021	NM_025378	ENSMUSG00000025492	Ifitm3	1110004C05Rik|Cd225|Cdw217|DSPA2b|Fgls|IP15|mil-1	interferon induced transmembrane protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115655954-2	chr11	115655854	115656054	+	647.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001313936, intron 2 of 5)	intron (NM_001313936, intron 2 of 5)	-27659.0	NM_001252395	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-88976407-2	chr11	88976322	88976522	+	772.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016706, intron 1 of 6)	intron (NM_016706, intron 1 of 6)	2487.0	NM_016706	12812.0	Mm.268004	NM_016706	ENSMUSG00000033983	Coil	C79982|Cln80|p80|p80-coilin	coilin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-142817872-4	chr5	142817780	142817980	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001122730)	promoter-TSS (NM_001122730)	-493.0	NM_001122730	231861.0	Mm.354649	NM_178242	ENSMUSG00000039477	Tnrc18	BC025631|EG381742|Zfp469	trinucleotide repeat containing 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-79534531-2	chr10	79534431	79534631	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302442)	promoter-TSS (NM_001302442)	-744.0	NM_001302389	50784.0	Mm.28873	NM_015817	ENSMUSG00000052151	Plpp2	Lpp2|PAP2-G|PAP2-gamma|PAP2c|Ppap2c	phospholipid phosphatase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-118448762-4	chr7	118448648	118448848	+	927.224976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001362179)	promoter-TSS (NM_001362179)	-526.0	NM_001362179	110058.0	Mm.156558	NM_138649	ENSMUSG00000058420	Syt17	Bk|sytXVII	synaptotagmin XVII	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43391531-2	chr4	43391431	43391631	+	646.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037709, intron 1 of 11)	B1_Mur1|SINE|Alu	9549.0	NM_001037709	100213.0	Mm.235730	NM_199057	ENSMUSG00000035969	Rusc2	AI840675|mKIAA0375	RUN and SH3 domain containing 2	protein-coding	1.1053369545089	0.594577843697056	0.583248841701543	1.47475531004377	1.11711712034957	0.597109213125474	0.585761794969516	1.48491603113476	0.0329832565854368	0.984203180661419	0.998431161219273
Merged-chr4-117267488-3	chr4	117267400	117267600	+	788.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029589, intron 3 of 3)	intron (NM_029589, intron 3 of 3)	15160.0	NM_029589	68777.0	Mm.331805	NM_026837	ENSMUSG00000048772	Tmem53	1110038M16Rik|1500001P22Rik|1700012A05Rik	transmembrane protein 53	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-55008393-4	chr11	55008299	55008499	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_138556, intron 6 of 24)	L2b|LINE|L2	25072.0	NR_138556	11749.0	Mm.265347	NM_013472	ENSMUSG00000018340	Anxa6	AW107198|Anx6|AnxVI|Cabm|Camb	annexin A6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-43338063-3	chr1	43337961	43338161	+	746.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-107690.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-60480413-1	chr3	60480313	60480513	+	620.0	f1_c57bl6.idr	intron (NM_001253713, intron 2 of 9)	intron (NM_001253713, intron 2 of 9)	7583.0	NM_001253713	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	-0.993074424864784	-0.977100067035998	-0.677097764248705	-0.700856174440468	-0.854240902875821	-0.974665591380505	-0.985791010617626	-0.989649937801139	-1.70596580834417	0.56413225407715	1
Merged-chr2-35979341-5	chr2	35979292	35979492	+	933.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029774, exon 1 of 10)	exon (NM_029774, exon 1 of 10)	232.0	NM_029774	74410.0	Mm.21591	NM_028921	ENSMUSG00000026885	Ttll11	4932702F08Rik|4933424A20Rik|AU043211|D2Ertd624e	tubulin tyrosine ligase-like family, member 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-136143543-2	chr1	136143443	136143643	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039472, intron 1 of 34)	intron (NM_001039472, intron 1 of 34)	12153.0	NR_153829	16565.0	Mm.276135	NM_019962	ENSMUSG00000041642	Kif21b	2610511N21Rik|mKIAA0449	kinesin family member 21B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-67733193-4	chr15	67733122	67733322	+	889.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	506453.0	NR_045140	69334.0	Mm.63770	NR_045140	ENSMUSG00000102069	1700012I11Rik	-	RIKEN cDNA 1700012I11 gene	ncRNA	4.29841508648837	4.22622059155012	3.70697040990645	4.92781716580672	1.7636193348749	2.53651963714798	3.39526907768532	2.6840894889601	-2.45409135982465	4.27573220048104e-05	0.00153287554605692
Merged-chr10-122800519-4	chr10	122800407	122800607	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110218, intron 2 of 9)	intron (NM_001110218, intron 2 of 9)	121192.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	1.73415227332005	2.14472493007318	2.37325785204763	2.8159843448098	2.51989756726797	3.10732223258558	1.39943931757232	3.18326499022053	0.794010071208037	0.371126564217342	0.863911489096448
Merged-chr15-6656291-2	chr15	6656174	6656374	+	681.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011815, intron 15 of 17)	L1_Mus4|LINE|L1	-1971.0	NR_155272	102632231.0	Mm.444780	NR_155272		LOC102632231	-	uncharacterized LOC102632231	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-62693477-2	chr11	62693377	62693577	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35616.0	NM_133208	170740.0	Mm.339982	NM_133208	ENSMUSG00000005267	Zfp287	B230333C16Rik|SKAT-2|Skat2|Znf287|mszf16|mszf74	zinc finger protein 287	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-4351878-4	chr18	4351782	4351982	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007746, intron 1 of 7)	intron (NM_007746, intron 1 of 7)	1071.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71288326-4	chr17	71288242	71288442	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357337, intron 2 of 7)	intron (NM_001357337, intron 2 of 7)	22669.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34191888-1	chr17	34191788	34191988	+	556.0	f1_balb.idr	intron (NM_001161730, intron 5 of 11)	MIRb|SINE|MIR	4332.0	NM_013683	21354.0	Mm.482076	NM_013683	ENSMUSG00000037321	Tap1	ABC17|APT1|Abcb2|Ham-1|Ham1|MTP1|PSF1|RING4|TAP|Tap-1|Y3	transporter 1, ATP-binding cassette, sub-family B (MDR/TAP)	protein-coding	0.460008099757458	0.0462160163803523	0.0383647146485519	0.0322401309079253	0.0234802965349112	0.462624433041455	1.17285827948419	0.0333144192155185	2.26560762647318	0.288171456384828	1
Merged-chr11-115081093-4	chr11	115081014	115081214	+	911.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M5|LINE|L1	-10317.0	NM_001163753	58222.0	Mm.143789	NM_021411	ENSMUSG00000020732	Rab37	B230331O03Rik|B230354I04Rik	RAB37, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-34312690-4	chr14	34312584	34312784	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008133, intron 1 of 12)	intron (NM_008133, intron 1 of 12)	1957.0	NM_008133	14661.0	Mm.10600	NM_008133	ENSMUSG00000021794	Glud1	AI118167|Gdh-X|Glud|Gludl	glutamate dehydrogenase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-102518067-4	chr15	102517980	102518180	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009319)	promoter-TSS (NM_009319)	-112.0	NM_001253795	21357.0	Mm.291485	NM_009319	ENSMUSG00000023051	Tarbp2	Prbp|TRBP	TARBP2, RISC loading complex RNA binding subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-95188505-2	chr9	95188405	95188605	+	673.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177909, intron 14 of 15)	intron (NM_177909, intron 14 of 15)	218765.0	NM_018763	54371.0	Mm.212446	NM_018763	ENSMUSG00000033350	Chst2	AI428561|AW121776|C130041E03Rik|Chts2|GST-2|GlcNAc6ST|Gn6st	carbohydrate sulfotransferase 2	protein-coding	1.46634022991982	1.64746191289895	1.01768990916508	1.67693843425604	1.71137749068302	1.93503948931439	2.24922813922299	1.00471278173963	1.02390153002621	0.389377130630507	0.878578793881975
Merged-chr14-40949918-4	chr14	40949830	40950030	+	919.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145928, intron 1 of 8)	L1MC4|LINE|L1	-1721.0	NM_001316748	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-100107498-2	chr12	100107398	100107598	+	745.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4833.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-134522064-4	chr5	134521975	134522175	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039162, intron 3 of 15)	ORR1F|LTR|ERVL-MaLR	30359.0	NM_001039162	269713.0	Mm.255138	NM_009990	ENSMUSG00000063146	Clip2	B230327O20|CLIP-115|Clip1|Cyln2|WSCR4|mKIAA0291|wbscr4	CAP-GLY domain containing linker protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-75067131-3	chr5	75067028	75067228	+	601.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8473.0	NM_133256	14843.0	Mm.218752	NM_133256	ENSMUSG00000035946	Gsx2	Gsh-2|Gsh2	GS homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-100680158-2	chr15	100680058	100680258	+	901.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_033612, intron 6 of 7)	intron (NM_033612, intron 6 of 7)	7762.0	NM_033612	109901.0	Mm.2131	NM_033612	ENSMUSG00000023031	Cela1	1810009A17Rik|1810062B19Rik|Ela-1|Ela1|PC-TsF	chymotrypsin-like elastase family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-163421966-2	chr2	163421866	163422066	+	925.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	2195.0	NR_151490	108168734.0	Mm.440000	NR_151490		2900093K20Rik	-	RIKEN cDNA 2900093K20 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-66125122-4	chr2	66125029	66125229	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015736)	promoter-TSS (NM_015736)	-336.0	NM_015736	14425.0	Mm.439760	NM_015736	ENSMUSG00000026994	Galnt3	-	polypeptide N-acetylgalactosaminyltransferase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80190801-2	chr10	80190701	80190901	+	868.666626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_007909)	TTS (NM_007909)	11319.0	NM_007909	13637.0	Mm.1478	NM_007909	ENSMUSG00000003070	Efna2	CEK7L|Elf1|Epl6|Eplg6|Lerk6	ephrin A2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-97343004-3	chr15	97342878	97343078	+	898.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172293, intron 3 of 5)	MTD|LTR|ERVL-MaLR	-95691.0	NM_001164602	105827.0	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-115647547-1	chr6	115647447	115647647	+	606.0	f0_balb.idr	intron (NM_029780, intron 1 of 16)	intron (NM_029780, intron 1 of 16)	28341.0	NM_001356334	110157.0	Mm.184163	NM_029780	ENSMUSG00000000441	Raf1	6430402F14Rik|AA990557|BB129353|Craf1|D830050J10Rik|Raf-1|c-Raf|cRaf|v-Raf	v-raf-leukemia viral oncogene 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-43384128-2	chr6	43384028	43384228	+	669.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013861, intron 8 of 8)	B4|SINE|B4	-58301.0	NR_045988	319812.0	Mm.446393	NR_045988		9430018G01Rik	-	RIKEN cDNA 9430018G01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-32518626-2	chr9	32518526	32518726	+	718.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008026, intron 1 of 8)	intron (NM_008026, intron 1 of 8)	22826.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88492633-1	chr3	88492533	88492733	+	825.0	f0_balb.idr	intron (NM_001002011, intron 1 of 11)	intron (NM_001002011, intron 1 of 11)	679.0	NM_019390	16905.0	Mm.243014	NM_019390	ENSMUSG00000028063	Lmna	Dhe	lamin A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-136904448-1	chr6	136904348	136904548	+	919.0	f0_c57.idr	Intergenic	Intergenic	17732.0	NM_026983	69187.0	Mm.33692	NM_026983	ENSMUSG00000030219	Erp27	1810033M07Rik|1810047B09Rik	endoplasmic reticulum protein 27	protein-coding	3.02314287839266	2.25565876814975	2.61212315101504	2.90762806344275	2.00290163770977	1.21631754461301	1.17966492411297	1.14673913787867	-3.26065071160527	0.00214181841006426	0.0351042143436728
Merged-chr9-77834779-3	chr9	77834661	77834861	+	815.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	80226.0	NM_010295	14629.0	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33883186-3	chr16	33883087	33883287	+	769.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 4 of 14)	intron (NM_001145884, intron 4 of 14)	53522.0	NM_001145884	16419.0	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167799763-4	chr2	167799620	167799820	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	108543.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-90233519-4	chr9	90233424	90233624	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 3 of 12)	intron (NM_194334, intron 3 of 12)	37245.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-53817825-2	chr1	53817725	53817925	+	574.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001883, intron 28 of 28)	intron (NM_001001883, intron 28 of 28)	-31599.0	NR_106149	102465783.0		NR_106149	ENSMUSG00000098443	Mir7681	Gm27806|mmu-mir-7681	microRNA 7681	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-102239412-3	chr15	102239300	102239500	+	825.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011244, exon 8 of 10)	exon (NM_011244, exon 8 of 10)	7100.0	NM_001042727	19411.0	Mm.1273	NM_011244	ENSMUSG00000001288	Rarg	Nr1b3|RAR-gamma|RARD|RARgamma2	retinoic acid receptor, gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167796201-2	chr2	167796101	167796301	+	599.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	105024.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-88551433-2	chr4	88551333	88551533	+	957.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	6812.0	NM_206870	242517.0	Mm.377261	NM_206870	ENSMUSG00000096011	Ifna15	Gm12597|Ifnaa|MuIFN-alpha-A	interferon alpha 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-122071680-2	chr10	122071580	122071780	+	798.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR48A|LTR|ERV1	8199.0	NR_004052	668272.0	Mm.236764	NR_004052		Gm9079	-	transmembrane emp24 domain trafficking protein 2 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-69246888-2	chr10	69246788	69246988	+	908.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252638, intron 2 of 11)	intron (NM_001252638, intron 2 of 11)	33694.0	NM_001252638	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-90249339-4	chr11	90249246	90249446	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026178)	promoter-TSS (NM_026178)	-130.0	NM_026178	67468.0	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-43950165-3	chr16	43950070	43950270	+	803.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027801, intron 12 of 15)	intron (NM_027801, intron 12 of 15)	28880.0	NM_001007460	332175.0	Mm.327852	NM_001007460	ENSMUSG00000036304	Zdhhc23	Gm1751|Gm779|nidd	zinc finger, DHHC domain containing 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-99423183-4	chr5	99423076	99423276	+	916.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 2 of 3)	intron (NR_030692, intron 2 of 3)	-170249.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-43549959-4	chr13	43549854	43550054	+	972.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081059, intron 4 of 8)	intron (NM_001081059, intron 4 of 8)	10237.0	NM_001081059	76137.0	Mm.426290	NM_001081059	ENSMUSG00000021371	Mcur1	6230416A05Rik|AU015498|AV136929|AW554392|C88263|Ccdc90a	mitochondrial calcium uniporter regulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-99193741-2	chr10	99193641	99193841	+	574.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153333, intron 12 of 12)	intron (NR_153333, intron 12 of 12)	-69490.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21927479-4	chr9	21927380	21927580	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253870)	promoter-TSS (NM_001253870)	9.0	NM_025977	67119.0	Mm.154305	NM_025977	ENSMUSG00000006241	Ccdc159	2510048L02Rik	coiled-coil domain containing 159	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-29361572-2	chr17	29361472	29361672	+	664.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013710, intron 1 of 15)	intron (NM_013710, intron 1 of 15)	658.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-102823585-4	chr2	102823487	102823687	+	885.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039150, intron 12 of 13)	intron (NM_001039150, intron 12 of 13)	-76827.0	NR_153853	102637542.0	Mm.371582	NR_153852		Gm13872	-	predicted gene 13872	ncRNA	3.377493100483	3.18975962753272	2.57843544301721	1.37176710534863	3.24985267989776	3.12643387124939	1.71135746247147	1.88221764511265	-0.273649440931349	0.762193538085265	0.998431161219273
Merged-chr2-79628789-2	chr2	79628683	79628883	+	733.0	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-6642.0	NM_080558	70599.0	Mm.272881	NM_080558	ENSMUSG00000027007	Ssfa2	5730488C15Rik|CS-1|CS1|KRAP|SPAG13|mKIAA1927	sperm specific antigen 2	protein-coding	-0.104631909381895	-0.0904528562912864	-0.0951109608101036	-0.0986962379570411	0.263831234126723	0.511956393851121	0.07950505586488	0.197770349456189	3.83182932724752	0.072294084170011	1
Merged-chr14-70078725-7	chr14	70078626	70078826	+	847.285706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289925, intron 2 of 2)	CpG-4626	931.0	NM_001289927	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-144183579-2	chr7	144183479	144183679	+	606.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113373, intron 2 of 15)	intron (NM_001113373, intron 2 of 15)	8059.0	NM_001113373	210274.0	Mm.483624	NM_001081370	ENSMUSG00000037541	Shank2	ProSAP1|mKIAA1022	SH3 and multiple ankyrin repeat domains 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-10052727-2	chr18	10052627	10052827	+	758.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	MMERGLN-int|LTR|ERV1	-22578.0	NM_021522	59025.0	Mm.329277	NM_021522	ENSMUSG00000047879	Usp14	2610005K12Rik|2610037B11Rik|AW107924|C78769|ax|nmf375	ubiquitin specific peptidase 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-51264088-2	chr11	51263988	51264188	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358281)	promoter-TSS (NM_001358281)	-426.0	NM_001358281	193286.0	Mm.80975	NM_177567	ENSMUSG00000045942	BC049762	4930503F14	cDNA sequence BC049762	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-61022720-4	chr9	61022650	61022850	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5681.0	NR_040767	330956.0	Mm.207985	NR_040767	ENSMUSG00000111290	Gm5122	A430102L10	predicted gene 5122	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-129942588-7	chr5	129942515	129942715	+	893.654785	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001327, intron 1 of 1)	CpG	506.0	NM_027121	69568.0	Mm.288718	NM_027121	ENSMUSG00000066735	Vkorc1l1	2310024K08Rik	vitamin K epoxide reductase complex, subunit 1-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-119001968-2	chr10	119001868	119002068	+	732.43335	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	48531.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	-0.366626417179347	-0.352692175281507	-0.357249875608969	0.28625245588711	-0.365754612910758	-0.35166575818681	-0.356244039914784	0.294119739107777	0.0282770312316891	0.991511101680898	1
Merged-chr16-87746929-4	chr16	87746814	87747014	+	923.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	47960.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-87261093-2	chr12	87260993	87261193	+	712.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001142581, intron 2 of 18)	intron (NM_001142581, intron 2 of 18)	3151.0	NM_134044	104799.0	Mm.208750	NM_134044	ENSMUSG00000021038	Vipas39	6720456H09Rik|9330175H22Rik|AI413782|SPE-39|Spe39|Vipar|hSPE-39	VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124848465-2	chr6	124848365	124848565	+	902.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013534, intron 9 of 14)	CT-rich|Low_complexity|Low_complexity	-8190.0	NM_013530	14695.0	Mm.68889	NM_013530	ENSMUSG00000023439	Gnb3	Gnb-3	guanine nucleotide binding protein (G protein), beta 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-10460332-3	chr10	10460234	10460434	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127353, intron 1 of 36)	L1MEd|LINE|L1	11980.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	5.76627613810352	5.9686008687374	5.37866649289958	4.95175721003626	3.06455743518561	2.92670426750035	3.95887156725032	2.68849429708133	-2.92876188153151	2.31526197888709e-11	5.78719025472653e-09
Merged-chr8-33668400-2	chr8	33668300	33668500	+	802.666626	f0_c57.idr|f1_c57bl6.idr	intron (NM_010344, intron 1 of 12)	intron (NM_010344, intron 1 of 12)	15162.0	NM_010344	14782.0	Mm.283573	NM_010344	ENSMUSG00000031584	Gsr	AI325518|D8Ertd238e|Gr-1|Gr1	glutathione reductase	protein-coding	3.05349848296286	2.42769956680584	2.55487847451933	2.80622498243939	1.40490103955832	2.00162997312794	1.52002990314934	1.21320033805358	-3.01941690269691	0.00200442023462342	0.0334577511076013
Merged-chr15-101123408-2	chr15	101123308	101123508	+	568.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5114.0	NM_001277258	11482.0	Mm.279542	NM_009612	ENSMUSG00000000530	Acvrl1	AI115505|AI427544|Acvrlk1|Alk1	activin A receptor, type II-like 1	protein-coding	-0.215921429714484	-0.200146835243761	-0.205300880744088	0.343223852056556	-0.0618557750541144	0.557002397280927	-0.204162989667659	-0.20858963109631	0.836724367215443	0.723679017742477	1
Merged-chr15-25144414-4	chr15	25144307	25144507	+	663.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	269357.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-82088154-4	chr11	82088055	82088255	+	807.520813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13690.0	NM_011331	20293.0	Mm.867	NM_011331	ENSMUSG00000035352	Ccl12	MCP-5|Scya12	chemokine (C-C motif) ligand 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-97711855-2	chr13	97711755	97711955	+	976.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	35556.0	NR_152140	403201.0	Mm.110162	NR_152140		5330416C01Rik	Gm532	RIKEN cDNA 5330416C01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-53568023-4	chr19	53567941	53568141	+	938.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MurERV4-int|LTR|ERVK	-32355.0	NM_007790	13006.0	Mm.14910	NM_007790	ENSMUSG00000024974	Smc3	Bamacan|Cspg6|HCAP|Mmip1|SMC-3|SmcD	structural maintenance of chromosomes 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-64340647-4	chr9	64340548	64340748	+	956.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172519)	promoter-TSS (NM_172519)	125.0	NM_001177784	213550.0	Mm.268341	NM_172519	ENSMUSG00000032396	Dis3l	AV340375	DIS3 like exosome 3'-5' exoribonuclease	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-142021407-4	chr4	142021308	142021508	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131014, intron 1 of 1)	intron (NR_131014, intron 1 of 1)	3510.0	NR_131014	78917.0	Mm.139995	NR_131014	ENSMUSG00000085761	4930455G09Rik	-	RIKEN cDNA 4930455G09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-9261933-4	chr13	9261833	9262033	+	989.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14592.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-122160870-4	chr2	122160775	122160975	+	907.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_080510, exon 1 of 7)	5' UTR (NM_080510, exon 1 of 7)	175.0	NM_080510	70928.0	Mm.379188	NM_080510	ENSMUSG00000033368	Trim69	4921519C19Rik|Rnf36|Trif|Trimless	tripartite motif-containing 69	protein-coding	4.0815587255273	3.21699473271113	4.15846059292114	3.70585486843138	4.02746955647538	3.56241498195688	3.24304379651388	2.61992769298104	-0.554643953384741	0.321976792266853	0.823903365381149
Merged-chr2-155276390-4	chr2	155276312	155276512	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025735)	promoter-TSS (NM_025735)	48.0	NR_046364	66734.0	Mm.196239	NM_025735	ENSMUSG00000027602	Map1lc3a	1010001H21Rik|4922501H04Rik|LC3|LC3a	microtubule-associated protein 1 light chain 3 alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-105986559-4	chr1	105986435	105986635	+	981.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151625, intron 2 of 2)	intron (NR_151625, intron 2 of 2)	3747.0	NR_151625	635504.0	Mm.359717	NR_151625		Gm7160	EG635504	predicted gene 7160	ncRNA	1.98585017932734	2.39067281990966	1.16800129624599	1.13762615778157	2.23000315684254	2.73668170068278	1.45973834191401	3.26065410550553	1.76397949699507	0.090885379756043	0.465931135991656
Merged-chr18-32818185-4	chr18	32818117	32818317	+	898.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021367, intron 4 of 4)	intron (NM_021367, intron 4 of 4)	1357.0	NR_033206	53603.0	Mm.143716	NM_021367	ENSMUSG00000024379	Tslp	-	thymic stromal lymphopoietin	protein-coding	1.72920992730946	1.02123528640053	1.65093743909402	0.967872591573117	1.5155621220126	1.2139101708702	0.788632173278455	0.777145658874616	-1.07022009006641	0.442263495603808	0.911466644606109
Merged-chr1-92742534-4	chr1	92742401	92742601	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-89144.0	NM_016696	14733.0	Mm.297976	NM_016696	ENSMUSG00000034220	Gpc1	AI462976	glypican 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21131361-4	chr9	21131251	21131451	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018793)	promoter-TSS (NM_018793)	-76.0	NM_001205312	54721.0	Mm.20249	NM_018793	ENSMUSG00000032175	Tyk2	JTK1	tyrosine kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88491862-2	chr3	88491762	88491962	+	551.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001002011, intron 1 of 11)	intron (NM_001002011, intron 1 of 11)	1450.0	NM_019390	16905.0	Mm.243014	NM_019390	ENSMUSG00000028063	Lmna	Dhe	lamin A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129462569-2	chr4	129462469	129462669	+	860.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133889, intron 2 of 10)	intron (NM_133889, intron 2 of 10)	890.0	NM_133889	100383.0	Mm.17918	NM_133889	ENSMUSG00000040859	Bsdc1	1110063F24Rik|AW011758	BSD domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-94595957-4	chr3	94595861	94596061	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR44A|LTR|ERVK	-13245.0	NM_029721	76742.0	Mm.28160	NM_029721	ENSMUSG00000028136	Snx27	5730552M22Rik|ESTM45|ESTM47|R75405	sorting nexin family member 27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-32460513-2	chr5	32460413	32460613	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172707, intron 1 of 7)	intron (NM_172707, intron 1 of 7)	1543.0	NM_172707	19046.0	Mm.241931	NM_172707	ENSMUSG00000014956	Ppp1cb	1200010B19	protein phosphatase 1, catalytic subunit, beta isoform	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141476818-3	chr7	141476741	141476941	+	915.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252588, intron 1 of 7)	intron (NM_001252588, intron 1 of 7)	461.0	NM_001252588	64540.0	Mm.489619	NM_053082	ENSMUSG00000025511	Tspan4	AI325509|AI746565|D130042I01Rik|NAG-2|Tm4sf7|Tspan-4	tetraspanin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-144915076-4	chr7	144914923	144915123	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347537)	promoter-TSS (NM_001347537)	-77.0	NM_001357868	72284.0	Mm.273049	NM_028184	ENSMUSG00000031072	Oraov1	2210010N10Rik|TAOS1	oral cancer overexpressed 1	protein-coding	4.44474645712762	4.38122318913512	4.06965250111047	3.60558461027475	4.01458476131807	4.56662690770643	3.74077714846038	3.13329030386602	-0.283854479736933	0.560706685324814	0.960350977191929
Merged-chr6-13609471-4	chr6	13609357	13609557	+	829.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1359.0	NM_028990	101118.0	Mm.254845	NM_028990	ENSMUSG00000029569	Tmem168	5730526F17Rik|8430437G11Rik|AI462344|AI504145	transmembrane protein 168	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-65882381-3	chr3	65882352	65882552	+	858.238098	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	75797.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-69088639-4	chr8	69088528	69088728	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007509)	promoter-TSS (NM_007509)	-108.0	NM_007509	11966.0	Mm.249096	NM_007509	ENSMUSG00000006273	Atp6v1b2	AI194269|AI790362|Atp6b2|HO57|R74844	ATPase, H+ transporting, lysosomal V1 subunit B2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-48856971-4	chr11	48856859	48857059	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14461.0	NM_001355757	15944.0	Mm.29938	NM_008326	ENSMUSG00000046879	Irgm1	Ifggd3|Ifi1|Iigp3|Iipg3|Irgm	immunity-related GTPase family M member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-45105852-4	chr2	45105749	45105949	+	903.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149354, intron 2 of 2)	intron (NR_149354, intron 2 of 2)	4428.0	NM_001289521	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-77857677-2	chr15	77857577	77857777	+	573.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15502.0	NM_022410	17886.0	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52100890-2	chr13	52100790	52100990	+	908.666626	f1_balb.idr|f1_c57bl6.idr	intron (NR_045061, intron 3 of 7)	intron (NR_045061, intron 3 of 7)	4149.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-12114696-2	chr15	12114596	12114796	+	975.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-3155.0	NM_011767	22763.0	Mm.273496	NM_011767	ENSMUSG00000022201	Zfr	C920030H05Rik	zinc finger RNA binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-101736852-2	chr13	101736752	101736952	+	669.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077495, intron 2 of 15)	intron (NM_001077495, intron 2 of 15)	31365.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69514972-2	chr11	69514872	69515072	+	699.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081330, intron 11 of 85)	intron (NM_001081330, intron 11 of 85)	34136.0	NM_001081330	327954.0	Mm.247478	NM_177617	ENSMUSG00000005237	Dnah2	2900022L05Rik|4930564A01|D130094J20|D330014H01Rik|Dnahc2|Dnhd3	dynein, axonemal, heavy chain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-48046769-3	chr4	48046671	48046871	+	851.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015743, intron 1 of 7)	intron (NM_015743, intron 1 of 7)	1466.0	NM_015743	18124.0	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80960985-4	chr10	80960871	80961071	+	852.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038655, intron 2 of 3)	intron (NM_001038655, intron 2 of 3)	30880.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133661096-2	chr4	133660996	133661196	+	801.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001145956)	TTS (NM_001145956)	11551.0	NM_001145955	230801.0	Mm.217004	NM_178698	ENSMUSG00000043257	Pigv	B330013B03|D430024F16Rik	phosphatidylinositol glycan anchor biosynthesis, class V	protein-coding	-1.8418762459921	-1.8125357239735	-1.82140854000656	-1.82869693527674	-1.56059678980999	-1.8106129477253	-1.81939992894326	-1.82739231600805	1.3620893379502	0.699511506488145	1
Merged-chr2-102839288-3	chr2	102839187	102839387	+	951.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039150, intron 6 of 13)	intron (NM_001039150, intron 6 of 13)	62378.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	1.67843544844828	2.92770472361986	2.70678763449308	2.84938268268715	2.72137653977512	2.94989565134508	3.99744420773622	2.86453576557901	1.10401898422224	0.133826107713662	0.571666672850202
Merged-chr7-55846356-4	chr7	55846255	55846455	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011370, intron 1 of 30)	ORR1C2|LTR|ERVL-MaLR	4284.0	NM_001164661	20430.0	Mm.37249	NM_011370	ENSMUSG00000030447	Cyfip1	E030028J09Rik|P140SRA-1|P140sra1|Shyc|Sra-1|Sra1|l(7)1Rl|l71Rl|l7Rl1|mKIAA0068|pl-1	cytoplasmic FMR1 interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-43935320-3	chr1	43935184	43935384	+	866.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009418, intron 1 of 29)	intron (NM_009418, intron 1 of 29)	1290.0	NM_009418	22019.0	Mm.401675	NM_009418	ENSMUSG00000041763	Tpp2	TPP-2|TppII	tripeptidyl peptidase II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-34304069-2	chr16	34303969	34304169	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177357, intron 9 of 59)	intron (NM_177357, intron 9 of 59)	209958.0	NM_001164268	545156.0	Mm.82274	NM_177357	ENSMUSG00000061751	Kalrn	2210407G14Rik|AV235988|DUET|E530005C20Rik|Gm539|Hapip|TRAD	kalirin, RhoGEF kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83741245-2	chr11	83741145	83741345	+	743.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5695.0	NM_183249	66107.0	Mm.902	NM_183249	ENSMUSG00000051748	Wfdc21	1100001G20Rik|Wdnm1-like	WAP four-disulfide core domain 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5295925-3	chr17	5295835	5296035	+	905.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 8 of 19)	intron (NM_001085355, intron 8 of 19)	122832.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-145121115-4	chr6	145121023	145121223	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008511)	promoter-TSS (NM_008511)	-616.0	NM_008511	16970.0	Mm.843	NM_008511	ENSMUSG00000030263	Lrmp	D6Int3|D6Int4|D6Int5|D6Int7|D6Int8|Jaw1	lymphoid-restricted membrane protein	protein-coding	3.72365514435549	3.04152084366416	1.63840540258924	3.45939445829143	3.88286005213717	2.93898436631469	2.70073023781972	3.40622402914306	0.225734762768174	0.754655413634574	0.998431161219273
Merged-chr4-94017916-3	chr4	94017841	94018041	+	769.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	538855.0	NM_026368	67770.0	Mm.35170	NM_026368	ENSMUSG00000028578	Caap1	5830433M19Rik|AI536248|CAAP	caspase activity and apoptosis inhibitor 1	protein-coding	-1.7024385483431	-1.81249224917775	-1.82134771053534	-1.82862185015837	-1.70038292649591	-1.81057323376012	-1.81934302819017	-1.82731978264371	0.0376840119903864	0.991491645451152	1
Merged-chr19-55312950-2	chr19	55312850	55313050	+	883.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025883, intron 3 of 10)	MTD|LTR|ERVL-MaLR	3086.0	NM_001360595	66980.0	Mm.386789	NM_025883	ENSMUSG00000024982	Zdhhc6	2400007G07Rik|5930409M18Rik|AI462345|C77369|DHHC-6	zinc finger, DHHC domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-35397730-4	chr2	35397646	35397846	+	936.2416380000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080709)	promoter-TSS (NM_001080709)	-572.0	NM_001272040	74854.0	Mm.159338	NM_001080709	ENSMUSG00000079421	4930402F06Rik	-	RIKEN cDNA 4930402F06 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-11474841-2	chr8	11474741	11474941	+	749.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011227, intron 1 of 1)	RSINE1|SINE|B4	-3088.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34204509-4	chr17	34204405	34204605	+	997.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011530)	promoter-TSS (NM_011530)	26.0	NM_011530	21355.0	Mm.14814	NM_011530	ENSMUSG00000024339	Tap2	ABC18|AI462429|APT2|Abcb3|Ham-2|Ham2|MTP2|PSF2|RING11|Tap-2|Y1|jas	transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36328834-4	chr18	36328726	36328926	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19798.0	NM_001081365	66060.0	Mm.272527	NM_001081365	ENSMUSG00000046727	Cystm1	0610010O12Rik	cysteine-rich transmembrane module containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-65937125-3	chr5	65937037	65937237	+	864.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-29987.0	NM_001081104	231252.0	Mm.140015	NM_001081104	ENSMUSG00000029205	Chrna9	2410015I05Rik|Acra9|EG666827|Gm8311	cholinergic receptor, nicotinic, alpha polypeptide 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-79703887-2	chr10	79703787	79703987	+	680.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009768)	promoter-TSS (NM_009768)	-471.0	NM_001077184	12215.0	Mm.726	NM_009768	ENSMUSG00000023175	Bsg	AI115436|AI325119|CD147|EMMPRIN|HT-7	basigin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-107611807-4	chr5	107611708	107611908	+	816.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359917, intron 6 of 12)	intron (NM_001359917, intron 6 of 12)	13847.0	NM_001359916	231571.0	Mm.482420	NM_144911	ENSMUSG00000033773	Rpap2	AW060207	RNA polymerase II associated protein 2	protein-coding	2.03537494260461	2.15074012299042	2.70385753400547	1.50954809525358	2.16131905928066	2.6421570046987	1.3029768138946	2.47208171784328	0.155090494994873	0.873179586636246	0.998431161219273
Merged-chr15-77764540-2	chr15	77764440	77764640	+	672.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_022410, exon 36 of 41)	exon (NM_022410, exon 36 of 41)	-7530.0	NM_001357895	239552.0	Mm.125650	NM_001081970	ENSMUSG00000056656	Apol8	9830006J20Rik|APOL-II|Apol2	apolipoprotein L 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-99138882-2	chr13	99138782	99138982	+	740.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-45941.0	NM_001004149	238803.0	Mm.343207	NM_001004149	ENSMUSG00000050919	Zfp366	DC-SCRIPT|Znf366	zinc finger protein 366	protein-coding	0.444147526176711	0.21661107629399	0.211430318078497	0.485799558234629	0.450390861607272	0.679823621670343	0.517612185213737	0.360071974560038	1.21173636767994	0.49577972926263	1
Merged-chr17-6098067-4	chr17	6097951	6098151	+	664.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8779.0	NM_001103181	68842.0	Mm.449307	NM_054040	ENSMUSG00000034377	Tulp4	1110057P05Rik|2210038L17Rik|Tusp	tubby like protein 4	protein-coding	-2.18308165884198	-2.15547475440471	-2.16382331017202	-2.1706810624505	-2.18114370519566	-2.15366558754311	-2.03057248461154	-2.16945352807143	0.759018020146679	0.829933115115583	1
Merged-chr9-99087961-2	chr9	99087861	99088061	+	672.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_029094, intron 8 of 23)	B3|SINE|B2	52250.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-126611940-2	chr4	126611840	126612040	+	589.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001145950, exon 2 of 2)	exon (NM_001145950, exon 2 of 2)	2086.0	NM_001145950	230757.0	Mm.296838	NM_001013755	ENSMUSG00000073755	5730409E04Rik	7530403E16Rik|AI849033	RIKEN cDNA 5730409E04Rik gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-178319468-1	chr1	178319368	178319568	+	1000.0	f0_balb.idr	intron (NM_025511, intron 1 of 3)	PB1D10|SINE|Alu	315.0	NM_025511	66359.0	Mm.489720	NM_025511	ENSMUSG00000026500	Cox20	2310005N03Rik|Fam36a	COX20 Cox2 chaperone	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-107315326-2	chr11	107315226	107315426	+	626.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 4 of 9)	intron (NR_153311, intron 4 of 9)	-125945.0	NM_001161329	68979.0	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-32613811-3	chr11	32613621	32613821	+	589.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 15 of 18)	intron (NM_009288, intron 15 of 18)	-28834.0	NM_001271348	103583.0	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-152209034-2	chr3	152208934	152209134	+	907.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356363, intron 1 of 3)	intron (NM_001356363, intron 1 of 3)	1049.0	NM_001356363	67035.0	Mm.46746	NM_025926	ENSMUSG00000028035	Dnajb4	1700029A20Rik|2010306G19Rik|5730460G06Rik	DnaJ heat shock protein family (Hsp40) member B4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-60410079-4	chr1	60409973	60410173	+	898.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198127, intron 1 of 8)	CpG	454.0	NM_001198570	329165.0	Mm.212066	NM_198127	ENSMUSG00000026782	Abi2	8430425M24Rik|AI839867|C130078H13	abl-interactor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65539160-2	chr9	65539060	65539260	+	984.8333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40927.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-115711155-3	chr9	115711058	115711258	+	594.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-198297.0	NM_028638	73748.0	Mm.485018	NM_028638	ENSMUSG00000056880	Gadl1	1110027M19Rik|ADC|CSADC	glutamate decarboxylase-like 1	protein-coding	2.16835724482927	3.2764025860519	2.48224103204719	1.35803230878775	1.91204954965804	2.70742590633543	2.50226660145497	2.63273535943802	-0.0794032572526411	0.929149703300119	0.998431161219273
Merged-chr13-23402237-2	chr13	23402137	23402337	+	985.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21629.0	NM_013924	30946.0	Mm.292094	NM_013924	ENSMUSG00000036376	Abt1	-	activator of basal transcription 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-23915600-4	chr1	23915515	23915715	+	946.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357395, intron 1 of 10)	RSINE1|SINE|B4	-5879.0	NM_001290683	98366.0	Mm.329963	NM_028534	ENSMUSG00000026155	Smap1	1700056O10Rik|4921514B13Rik|4921525H11Rik|AI462175	small ArfGAP 1	protein-coding	5.88480836759067	6.04213751987453	5.52072095060947	5.39024027010567	3.71359090476004	4.96783642525454	3.23023551610664	4.13461738988623	-1.88471686454038	8.96854461678323e-07	5.96531907505086e-05
Merged-chr13-117034890-4	chr13	117034804	117035004	+	635.866699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9388.0	NM_001081009	52552.0	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-46009851-4	chr9	46009736	46009936	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357241, intron 1 of 5)	MIR|SINE|MIR	2854.0	NM_001357241	18475.0	Mm.200859	NM_008775	ENSMUSG00000003131	Pafah1b2	2610005M20Rik|AI747451|AU021353|Pafahb|mus[b]	platelet-activating factor acetylhydrolase, isoform 1b, subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106920157-2	chr11	106920057	106920257	+	991.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_025481, intron 1 of 18)	CpG	558.0	NM_025481	66313.0	Mm.340955	NM_025481	ENSMUSG00000018363	Smurf2	2810411E22Rik|AI558114|AI649275	SMAD specific E3 ubiquitin protein ligase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140619554-4	chr5	140619438	140619638	+	935.508301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12197.0	NM_008494	16848.0	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-51858820-4	chr11	51858700	51858900	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1170.0	NM_001357588	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-47813519-4	chr6	47813433	47813633	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009787)	promoter-TSS (NM_009787)	-21.0	NM_009787	12304.0	Mm.2442	NM_009787	ENSMUSG00000025823	Pdia4	AI987846|Cai|ERp-72|Erp72	protein disulfide isomerase associated 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-170855217-2	chr1	170855117	170855317	+	712.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081304, intron 1 of 15)	intron (NM_001081304, intron 1 of 15)	12554.0	NM_001081304	226641.0	Mm.377046	NM_001081304	ENSMUSG00000026663	Atf6	9130025P16Rik|9630036G24|AA789574|Atf6alpha|ESTM49	activating transcription factor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-9677131-4	chr10	9677031	9677231	+	967.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1923.0	NM_177271	320825.0	Mm.101115	NM_177271	ENSMUSG00000060487	Samd5	E130306M17Rik	sterile alpha motif domain containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-80081170-4	chr11	80081119	80081319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001277106)	promoter-TSS (NM_001277106)	-228.0	NM_018776	54394.0	Mm.272093	NM_018776	ENSMUSG00000017561	Crlf3	BB164954|Creme9|Cytor4	cytokine receptor-like factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-45042315-1	chr2	45042215	45042415	+	772.333313	f0_balb.idr	intron (NM_001355291, intron 2 of 9)	intron (NM_001355291, intron 2 of 9)	-19138.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-95961228-2	chr15	95961128	95961328	+	721.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 16 of 19)	intron (NM_175344, intron 16 of 19)	118325.0	NR_126493	402773.0	Mm.210567	NM_001033483	ENSMUSG00000078925	D030018L15Rik	-	nuclear receptor coactivator 2 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-51960384-2	chr3	51960278	51960478	+	882.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 1 of 4)	B3A|SINE|B2	144628.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-68822910-4	chr8	68822808	68823008	+	994.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027590, intron 16 of 16)	intron (NM_027590, intron 16 of 16)	28979.0	NM_001293792	70885.0	Mm.252421	NM_027590	ENSMUSG00000031864	Ints10	4921521J11Rik|AI462004	integrator complex subunit 10	protein-coding	1.68192370594382	2.775091506733	2.49443640364638	2.51839868192881	1.85174242869094	2.22711263823246	1.61728636981151	2.61897533457021	-0.654035601067135	0.465079812276724	0.922521920152562
Merged-chr8-116921686-8	chr8	116921569	116921769	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028131)	promoter-TSS (NM_028131)	-71.0	NM_028131	72155.0	Mm.23185	NM_028131	ENSMUSG00000031756	Cenpn	2610510J17Rik|AI426416|AW545024	centromere protein N	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-128805410-2	chr4	128805310	128805510	+	648.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081098, intron 1 of 8)	intron (NM_001081098, intron 1 of 8)	702.0	NM_001081098	230761.0	Mm.22616	NM_001081098	ENSMUSG00000028799	Zfp362	-	zinc finger protein 362	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-192763086-3	chr1	192763024	192763224	+	718.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144881, intron 1 of 11)	MTE2b|LTR|ERVL-MaLR	8095.0	NM_144881	226861.0	Mm.145857	NM_144881	ENSMUSG00000037375	Hhat	2810432O22Rik|AI462858|AP-2CRE|Skn|Tg(TFAP2A-cre)1Will	hedgehog acyltransferase	protein-coding	1.37950028584008	2.20518493198557	1.63155069221452	1.58232484767039	1.25543408153537	1.20471243805154	0.948264708738116	1.46217555235838	-1.83165372143452	0.124230609013263	0.552249014968455
Merged-chr6-90575595-4	chr6	90575521	90575721	+	888.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356412, intron 12 of 22)	intron (NM_001356412, intron 12 of 22)	24828.0	NM_027406	107747.0	Mm.30035	NM_027406	ENSMUSG00000030088	Aldh1l1	1810048F20Rik|FDH|Fthfd|Neut2	aldehyde dehydrogenase 1 family, member L1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-70964956-4	chr2	70964858	70965058	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001110512, exon 9 of 9)	3' UTR (NM_001110512, exon 9 of 9)	53416.0	NM_001110512	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-77719032-2	chr9	77718879	77719079	+	685.0	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-35556.0	NR_151778	14629.0	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	1.66514953484917	2.16000946344061	3.09487119489707	2.38094483538586	3.5632793543088	4.22531900108462	3.12025385788694	3.49874172266342	2.09298189768976	0.0025596775085945	0.0402219895233493
Merged-chr7-79466309-4	chr7	79466213	79466413	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017462)	promoter-TSS (NM_017462)	-40.0	NM_017462	18975.0	Mm.3616	NM_017462	ENSMUSG00000039176	Polg	AA409516|PolgA	polymerase (DNA directed), gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-84942831-4	chr15	84942714	84942914	+	891.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_016714, exon 8 of 8)	3' UTR (NM_016714, exon 8 of 8)	8809.0	NR_037206	100526461.0		NR_037206	ENSMUSG00000080441	Mir1249	mir-1249|mmu-mir-1249	microRNA 1249	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-78124125-2	chr18	78124025	78124225	+	786.833374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028122)	promoter-TSS (NM_028122)	-699.0	NM_028122	108052.0	Mm.33832	NM_028122	ENSMUSG00000059336	Slc14a1	2610507K20Rik|3021401A05Rik|UT-B|Utb1	solute carrier family 14 (urea transporter), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-174334550-2	chr2	174334450	174334650	+	829.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077507, intron 2 of 10)	intron (NM_001077507, intron 2 of 10)	4461.0	NM_001077510	14683.0	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102378543-2	chr12	102378443	102378643	+	888.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177620, intron 7 of 9)	intron (NM_177620, intron 7 of 9)	61270.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-88291481-3	chr11	88291351	88291551	+	851.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2592.0	NM_028859	74297.0	Mm.207320	NM_028859	ENSMUSG00000034031	Ccdc182	1700106J16Rik	coiled-coil domain containing 182	protein-coding	0.990915490376632	1.08946277066407	2.14575707736835	1.49824136424695	1.97693908568095	1.3836850586144	2.96425795130668	2.3862019920249	1.98856462716681	0.0762968061614605	0.418887620649117
Merged-chr12-113155427-3	chr12	113155342	113155542	+	762.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134041)	promoter-TSS (NM_134041)	-979.0	NM_134041	104732.0	Mm.87616	NM_134041	ENSMUSG00000037466	Tedc1	4930427A07Rik|AA536649|mFLJ00116	tubulin epsilon and delta complex 1	protein-coding	2.31373460749433	2.46537260735038	1.77485823892545	3.98263079659667	2.76990177390772	2.77817302926738	2.39640996559145	3.37672107626761	-0.119804859064121	0.881915758607808	0.998431161219273
Merged-chr1-85258824-1	chr1	85258724	85258924	+	634.75	f1_balb.idr	intron (NM_175219, intron 3 of 7)	intron (NM_175219, intron 3 of 7)	11742.0	NM_175219	620078.0	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik	RIKEN cDNA C130026I21 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-31483167-4	chr2	31483062	31483262	+	901.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_002687, intron 5 of 15)	intron (NR_002687, intron 5 of 15)	12854.0	NR_002687	432466.0	Mm.333323	NR_002687	ENSMUSG00000046687	Gm5424	EG432466	argininosuccinate synthase pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-99986963-1	chr12	99986863	99987063	+	811.0	f0_balb.idr	intron (NM_001164426, intron 2 of 2)	intron (NM_001164426, intron 2 of 2)	22464.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-36371730-3	chr19	36371607	36371807	+	610.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7360.0	NM_029508	76073.0	Mm.259180	NM_029508	ENSMUSG00000024805	Pcgf5	0610009F02Rik|1110054A01Rik|5830406C17Rik|5830443C21Rik|9530023M17Rik|AI324127	polycomb group ring finger 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-95419334-3	chr8	95419256	95419456	+	926.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008187)	TTS (NM_008187)	15513.0	NM_008187	14894.0	Mm.2080	NM_008187	ENSMUSG00000031796	Cfap20	2600014O15Rik|AL024127|Gtl3|T10-2A2	cilia and flagella associated protein 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-9890451-2	chr2	9890351	9890551	+	554.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040511)	promoter-TSS (NR_040511)	-911.0	NR_040511	77682.0	Mm.488621	NR_040511	ENSMUSG00000079602	9230102O04Rik	-	RIKEN cDNA 9230102O04 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-10919273-4	chr4	10919190	10919390	+	724.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44792.0	NM_026005	67157.0	Mm.440552	NM_026005	ENSMUSG00000059482	2610301B20Rik	AI428449	RIKEN cDNA 2610301B20 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-90723352-2	chr6	90723252	90723452	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356440, intron 1 of 13)	MamRep434|DNA|TcMar-Tigger	-6823.0	NM_001134383	232227.0	Mm.196943	NM_182784	ENSMUSG00000034312	Iqsec1	AW561907|BC026481|BRAG2|D6Ertd349e|cI-43	IQ motif and Sec7 domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-84716156-1	chr2	84716056	84716256	+	873.0	f0_balb.idr	promoter-TSS (NM_144887)	promoter-TSS (NM_144887)	-992.0	NM_144887	228136.0	Mm.288508	NM_144887	ENSMUSG00000034075	Zdhhc5	1110032A17Rik|AI451382|Zisp	zinc finger, DHHC domain containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97396778-4	chr6	97396674	97396874	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 5 of 23)	intron (NM_145148, intron 5 of 23)	62512.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10240181-3	chr19	10240037	10240237	+	908.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033481, intron 1 of 25)	intron (NM_001033481, intron 1 of 25)	611.0	NM_001033481	225908.0	Mm.329716	NM_001033481	ENSMUSG00000036098	Myrf	6030439E18|Gm1804|Gm98|Mrf	myelin regulatory factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150371863-4	chr4	150371766	150371966	+	992.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 1 of 22)	CpG	89950.0	NM_001085492	68703.0	Mm.291274	NM_001085492	ENSMUSG00000039852	Rere	1110033A15Rik|AI414665|ARG|ARP|ATN1L|AW742570|Atr2|DNB1|eye<m03Jus>|eyes3|mKIAA0458	arginine glutamic acid dipeptide (RE) repeats	protein-coding	3.7313953824096	3.57095852385498	3.69895683251033	3.86187532752371	3.96455134215418	3.39505386699636	3.72684053900482	3.4590628624886	-0.0859570415966671	0.86126444368824	0.998431161219273
Merged-chr5-130456704-3	chr5	130456614	130456814	+	832.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021371, intron 1 of 5)	intron (NM_021371, intron 1 of 5)	7922.0	NM_021371	140904.0	Mm.40875	NM_021371	ENSMUSG00000060371	Caln1	9630012C17Rik|Cabp8|MNCb-0849	calneuron 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166045221-4	chr2	166045112	166045312	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008679, intron 2 of 22)	intron (NM_008679, intron 2 of 22)	52575.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	4.79272977656494	3.6371375561213	4.5834075165201	4.37092710719433	4.09195657815011	3.76745982298472	4.24658979329073	5.14769182655094	0.00912652306227789	0.984088811423935	0.998431161219273
Merged-chr14-66867537-2	chr14	66867437	66867637	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009955, intron 1 of 13)	CpG	1063.0	NM_009955	12934.0	Mm.352648	NM_009955	ENSMUSG00000022048	Dpysl2	AI851130|Crmp2|DRP2|Musunc33|TOAD-64|Ulip2	dihydropyrimidinase-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4067542-2	chr19	4067442	4067642	+	793.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-8095.0	NM_001362043	225884.0	Mm.440201	NM_144869	ENSMUSG00000058216	Gstp3	-	glutathione S-transferase pi 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59041219-4	chr15	59041109	59041309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144800, intron 3 of 14)	intron (NM_144800, intron 3 of 14)	40817.0	NM_001146180	211401.0	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106034209-2	chr11	106034109	106034309	+	705.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001037712)	TTS (NM_001037712)	-2663.0	NM_027946	71833.0	Mm.307455	NM_027946	ENSMUSG00000049354	Dcaf7	1700012F10Rik|2610037L01Rik|C86529|HAN11|Wdr68	DDB1 and CUL4 associated factor 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80781729-3	chr7	80781671	80781871	+	776.694458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016721, intron 2 of 37)	intron (NM_016721, intron 2 of 37)	21560.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	0.335228153002623	0.384950742260732	1.39431785458664	0.356753199952092	0.33849647766259	0.388420555139818	1.99381062072384	0.963403556883944	1.43077374004306	0.657721644055678	0.988704682801132
Merged-chr8-83575526-1	chr8	83575426	83575626	+	673.0	f1_balb.idr	intron (NM_134118, intron 1 of 12)	intron (NM_134118, intron 1 of 12)	8768.0	NM_025843	66916.0	Mm.29683	NM_025843	ENSMUSG00000033938	Ndufb7	1110002H15Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7	protein-coding	1.75753154912994	1.71192439896705	1.08067530022681	1.36132127157674	1.69598925904316	1.30718468351999	0.873976751124796	0.861059732278485	-0.961217967113476	0.467507565514454	0.923770669682091
Merged-chr2-103504932-2	chr2	103504832	103505032	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19779.0	NM_009804	12359.0	Mm.4215	NM_009804	ENSMUSG00000027187	Cat	2210418N07|Cas-1|Cas1|Cs-1	catalase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30442695-3	chr2	30442607	30442807	+	903.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138748, intron 8 of 9)	intron (NM_138748, intron 8 of 9)	26657.0	NM_138748	110854.0	Mm.275393	NM_138748	ENSMUSG00000039515	Ptpa	2610042B21Rik|C77440|N28142|PR53|Ppp2r4	protein phosphatase 2 protein activator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-145341421-4	chr6	145341320	145341520	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-46205.0	NR_003625	381827.0	Mm.179075	NM_001001987		1700073E17Rik	-	ribosomal protein L7 pseudogene	pseudo	2.90470427765581	3.3395786916815	3.71528814610176	2.89182488205764	2.04845009742008	2.31085740623891	2.39839664021412	2.15860436723313	-1.98716443484631	0.00562291920870752	0.0729075482702516
Merged-chr19-47133284-4	chr19	47133183	47133383	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133746, intron 2 of 2)	intron (NM_133746, intron 2 of 2)	5011.0	NM_133746	72691.0	Mm.31663	NM_133746	ENSMUSG00000033033	Calhm2	2810048G17Rik|Fam26b	calcium homeostasis modulator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107551088-2	chr9	107550988	107551188	+	791.833313	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001243748)	promoter-TSS (NM_001243748)	-467.0	NM_001243748	56289.0	Mm.12091	NM_019713	ENSMUSG00000010067	Rassf1	123F2|AA536941|AU044980|NORE2A|RDA32|REH3P21|Rassf1A|Rassf1B|Rassf1C	Ras association (RalGDS/AF-6) domain family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-139284647-2	chr4	139284564	139284764	+	674.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037761, intron 6 of 9)	intron (NM_001037761, intron 6 of 9)	26044.0	NR_151463	212555.0	Mm.45131	NM_145384	ENSMUSG00000028744	Pqlc2	BC019216	PQ loop repeat containing 2	protein-coding	0.903010678465317	0.490308608811374	0.127986325186817	0.123310572740218	0.391272791877237	0.497932467906491	0.12932198267593	0.124127823485893	-1.11951329264537	0.580136765926487	1
Merged-chr7-31111780-4	chr7	31111681	31111881	+	880.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001276269)	promoter-TSS (NM_001276269)	-784.0	NM_001276269	15451.0	Mm.19182	NM_008281	ENSMUSG00000001249	Hpn	Hlb320	hepsin	protein-coding	1.16982923749371	2.22984374528593	2.47361271389515	2.64326917195437	2.10457122958681	2.370617430421	1.24356494401134	1.97168140841707	-0.619327700240994	0.555012491130884	0.959914380895535
Merged-chr1-191879668-2	chr1	191879568	191879768	+	994.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-27113.0	NM_009579	22782.0	Mm.9024	NM_009579	ENSMUSG00000037434	Slc30a1	AI839647|C130040I11Rik|Znt1	solute carrier family 30 (zinc transporter), member 1	protein-coding	-1.506408258172	-1.31847805479402	-1.17305405047139	-1.49174839244863	-1.5041172280202	-1.4716328617526	-1.48140696660157	-1.49029721311822	-2.13324398881164	0.532606846307637	1
Merged-chr6-93068036-1	chr6	93067936	93068136	+	1000.0	f0_balb.idr	intron (NR_015530, intron 1 of 2)	intron (NR_015530, intron 1 of 2)	127454.0	NR_015530	330385.0	Mm.483472	NR_015530	ENSMUSG00000097462	9530026P05Rik	B430306B02	RIKEN cDNA 9530026P05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101576185-2	chr11	101576085	101576285	+	562.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008676, intron 20 of 23)	intron (NM_008676, intron 20 of 23)	-6057.0	NM_001359326	217203.0	Mm.280559	NM_144830	ENSMUSG00000034947	Tmem106a	0610008L10Rik|AI043106|BC022145	transmembrane protein 106A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-58714580-3	chr1	58714431	58714631	+	867.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_149256)	TTS (NR_149256)	1245.0	NM_001355056	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-73041948-4	chr2	73041853	73042053	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61507.0	NM_001018042	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-145267900-4	chr4	145267796	145267996	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21026.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-138227525-4	chr5	138227423	138227623	+	989.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013773, intron 1 of 5)	URR1B|DNA|hAT-Charlie	1619.0	NM_001013773	381680.0	Mm.156846	NM_001013773	ENSMUSG00000047592	Nxpe5	-	neurexophilin and PC-esterase domain family, member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-140941501-4	chr7	140941409	140941609	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_153832, exon 1 of 12)	non-coding (NR_153832, exon 1 of 12)	118.0	NM_145387	212974.0	Mm.260139	NM_145387	ENSMUSG00000062031	Pgghg	5730511L01Rik|Athl1|BC023151	protein glucosylgalactosylhydroxylysine glucosidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-52170253-4	chr1	52170160	52170360	+	766.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081081, intron 14 of 17)	B3A|SINE|B2	50638.0	NM_001205313	20846.0	Mm.277406	NM_009283	ENSMUSG00000026104	Stat1	2010005J02Rik|AA408197	signal transducer and activator of transcription 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-44591294-4	chr19	44591197	44591397	+	973.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28443.0	NM_176958	319594.0	Mm.145278	NM_176958	ENSMUSG00000036450	Hif1an	2310046M24Rik|A830014H24Rik|FIH|FIH1	hypoxia-inducible factor 1, alpha subunit inhibitor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-34387927-2	chr7	34387827	34388027	+	836.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025948, intron 1 of 10)	PB1D9|SINE|Alu	1778.0	NM_001360654	67070.0	Mm.276503	NM_025948	ENSMUSG00000066568	Lsm14a	2700023B17Rik|AA407828|AU017544|Tral|mRAP55A	LSM14A mRNA processing body assembly factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131021142-4	chr1	131021022	131021222	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010548, intron 2 of 4)	intron (NM_010548, intron 2 of 4)	1277.0	NM_010548	16153.0	Mm.874	NM_010548	ENSMUSG00000016529	Il10	CSIF|Il-10	interleukin 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-31715908-4	chr2	31715786	31715986	+	964.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001283047, intron 2 of 11)	intron (NM_001283047, intron 2 of 11)	27349.0	NM_001283046	11350.0	Mm.1318	NM_009594	ENSMUSG00000026842	Abl1	AI325092|Abl|E430008G22Rik|c-Abl	c-abl oncogene 1, non-receptor tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-55852575-4	chr7	55852483	55852683	+	979.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011370, intron 1 of 30)	MTD|LTR|ERVL-MaLR	10512.0	NM_001164661	20430.0	Mm.37249	NM_011370	ENSMUSG00000030447	Cyfip1	E030028J09Rik|P140SRA-1|P140sra1|Shyc|Sra-1|Sra1|l(7)1Rl|l71Rl|l7Rl1|mKIAA0068|pl-1	cytoplasmic FMR1 interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-83657012-4	chr8	83656935	83657135	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018771, intron 1 of 6)	L2|LINE|L2	4357.0	NM_018771	67903.0	Mm.20945	NM_018771	ENSMUSG00000019433	Gipc1	GIPC|Glut1CIP|Rgs19ip1|Semcap1|TIP-2|TaxIP2	GIPC PDZ domain containing family, member 1	protein-coding	4.0897885569111	3.46317368860738	4.54422604488384	4.38595005580263	4.07359355730379	3.87904348418285	4.43873084049353	3.36244270767202	-0.258351790605108	0.584903380441214	0.967268722441911
Merged-chr7-101348015-4	chr7	101347906	101348106	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001040111)	promoter-TSS (NM_001040111)	-63.0	NM_001040111	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	-0.25254549350169	-0.399557282166059	-0.204388762199435	-0.409042485979677	-0.414946956397833	-0.398359680424499	0.624573546065748	-0.408316155338433	2.17322181353421	0.374956475236307	1
Merged-chr8-68926695-4	chr8	68926562	68926762	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46107.0	NM_008509	16956.0	Mm.1514	NM_008509	ENSMUSG00000015568	Lpl	-	lipoprotein lipase	protein-coding	4.91447198052041	4.99143387091735	4.12330281983143	5.39583345790716	5.01003196073426	5.10812385735274	5.68204259075593	4.3437280788568	0.217129027819423	0.572013142207443	0.963681627499011
Merged-chr8-26066613-4	chr8	26066547	26066747	+	742.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207659, intron 13 of 21)	intron (NM_207659, intron 13 of 21)	-15962.0	NR_110583	76604.0	Mm.437190	NR_110583	ENSMUSG00000085437	1700047A11Rik	4930554C15Rik	RIKEN cDNA 1700047A11 gene	ncRNA	3.32178279335644	4.10381604464262	3.43882253132673	3.25646906352436	3.76713123246823	2.5761089227172	3.76506123110305	2.8500802860216	-0.331422224595648	0.578724074253643	0.965985075107763
Merged-chr5-31048404-7	chr5	31048312	31048512	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177870)	promoter-TSS (NM_177870)	150.0	NM_001177621	330064.0	Mm.205463	NM_177870	ENSMUSG00000006641	Slc5a6	E430023I20	solute carrier family 5 (sodium-dependent vitamin transporter), member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-66309528-5	chr7	66309453	66309653	+	971.888855	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146191, intron 6 of 33)	MER89|LTR|ERV1	72171.0	NR_106024	102465640.0		NR_106024	ENSMUSG00000098353	Mir7057	Gm27550|mmu-mir-7057	microRNA 7057	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-113642956-4	chr6	113642890	113643090	+	971.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 1 of 11)	intron (NM_001113553, intron 1 of 11)	4523.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30470699-2	chr2	30470599	30470799	+	999.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3500.0	NM_030244	72500.0	Mm.295464	NM_030244	ENSMUSG00000089762	Ier5l	2610524G09Rik	immediate early response 5-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-165673614-2	chr1	165673514	165673714	+	638.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038846, intron 1 of 5)	intron (NM_001038846, intron 1 of 5)	34480.0	NM_001038846	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80906503-2	chr10	80906403	80906603	+	683.166687	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347140)	promoter-TSS (NM_001347140)	-91.0	NM_001347140	16907.0	Mm.7362	NM_010722	ENSMUSG00000062075	Lmnb2	-	lamin B2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-34895244-3	chr8	34895151	34895351	+	861.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175091, intron 3 of 26)	intron (NM_175091, intron 3 of 26)	70439.0	NM_175091	21951.0	Mm.88364	NM_175091	ENSMUSG00000031529	Tnks	4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	protein-coding	1.65479804125939	0.788327091544447	0.774777540628143	0.764157713639921	1.31586696988923	1.622583448145	1.1644395377075	1.50175037499251	1.29340729274406	0.369826597650742	0.86364098252034
Merged-chr5-150952674-2	chr5	150952574	150952774	+	577.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013823)	promoter-TSS (NM_013823)	67.0	NM_013823	16591.0	Mm.6500	NM_013823	ENSMUSG00000058488	Kl	alpha-kl	klotho	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-16086733-4	chr4	16086612	16086812	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72824.0	NM_145950	209212.0	Mm.46455	NM_145950	ENSMUSG00000041153	Osgin2	BC010311|C230027H09Rik	oxidative stress induced growth inhibitor family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-61487414-1	chr18	61487314	61487514	+	645.0	f1_balb.idr	Intergenic	Intergenic	-2807.0	NR_045419	442846.0	Mm.417648	NR_045419		A530050N04Rik	-	RIKEN cDNA A530050N04 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-88362162-4	chr8	88362051	88362251	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_012047)	promoter-TSS (NM_012047)	40.0	NM_012047	26992.0	Mm.5400	NM_012047	ENSMUSG00000031660	Brd7	BP75|CELTIX1|Ptpn13ip	bromodomain containing 7	protein-coding	4.11940699233817	2.86696556864473	3.72982901022186	3.5597984406623	3.0963146528368	3.27655081888501	2.01172829175071	4.13195402117199	-0.46213273989413	0.478958609878637	0.928092227925527
Merged-chr8-11482818-2	chr8	11482718	11482918	+	753.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER5|LTR|ERV1	-4319.0	NM_011227	19332.0	Mm.37632	NM_011227	ENSMUSG00000031504	Rab20	AA536966|D8Ertd350e	RAB20, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132572279-2	chr4	132572179	132572379	+	771.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081211, intron 1 of 1)	MT2B|LTR|ERVL	8212.0	NM_001081211	19204.0	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-124023209-3	chr9	124023099	124023299	+	873.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009914, intron 1 of 1)	intron (NM_009914, intron 1 of 1)	1228.0	NM_009914	12771.0	Mm.57050	NM_009914	ENSMUSG00000035448	Ccr3	CC-CKR3|CKR3|Cmkbr1l2|Cmkbr3	chemokine (C-C motif) receptor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-119062203-4	chr10	119062114	119062314	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11715.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-51356580-3	chr11	51356480	51356680	+	773.599976	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153393, intron 2 of 28)	intron (NM_153393, intron 2 of 28)	66660.0	NM_153393	237759.0	Mm.154093	NM_153393	ENSMUSG00000063564	Col23a1	2810458L13Rik|AI429655	collagen, type XXIII, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100611847-4	chr11	100611784	100611984	+	890.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019795, intron 1 of 13)	intron (NM_019795, intron 1 of 13)	8284.0	NM_019795	56354.0	Mm.402409	NM_019795	ENSMUSG00000014195	Dnajc7	2010003F24Rik|2010004G07Rik|CCRP|Ttc2|mDj11|mTpr2	DnaJ heat shock protein family (Hsp40) member C7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-75655904-4	chr7	75655818	75656018	+	899.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 8 of 36)	L1M4|LINE|L1	-192420.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	1.46709845181105	1.17785276144735	1.88391695793799	1.53792580788464	2.29593270719176	1.6413887192398	2.02527474135173	2.48654295958231	1.79432293125329	0.0848652977310384	0.44758175503217
Merged-chr8-126527473-3	chr8	126527369	126527569	+	940.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52404.0	NM_001159907	212728.0	Mm.482479	NM_001159907	ENSMUSG00000090290	Tarbp1	Gm17296|Gm179	TAR RNA binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-121450873-1	chr7	121450773	121450973	+	735.0	f0_balb.idr	intron (NM_001081327, intron 1 of 1)	intron (NM_001081327, intron 1 of 1)	58577.0	NM_001081327	195646.0	Mm.247449	NM_177575	ENSMUSG00000046321	Hs3st2	6430516N12Rik|A830061E14Rik|AW491345	heparan sulfate (glucosamine) 3-O-sulfotransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116535202-2	chr11	116535102	116535302	+	928.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001172472, intron 4 of 5)	intron (NM_001172472, intron 4 of 5)	462.0	NM_011451	20698.0	Mm.20944	NM_011451	ENSMUSG00000061878	Sphk1	1110006G24Rik|Sk1|Spk1	sphingosine kinase 1	protein-coding	-1.27480050717774	-0.604729833679879	-1.25573295904267	-1.26493563944758	-1.27428069156472	-1.24210192204986	-1.25319678955844	-1.26328836405502	-2.6632876257018	0.439827081912762	1
Merged-chr11-78262791-3	chr11	78262688	78262888	+	847.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001002004, exon 2 of 39)	exon (NM_001002004, exon 2 of 39)	1034.0	NM_001002004	72503.0	Mm.237103	NM_001002004	ENSMUSG00000010277	2610507B11Rik	AU022687|D11Bhm178e|D11Bhm179e|E1|Kiaa0100|mKIAA0100	RIKEN cDNA 2610507B11 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-17936699-3	chr2	17936598	17936798	+	782.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60260.0	NM_026627	68231.0	Mm.23887	NM_026627	ENSMUSG00000062651	H2al2a	1700113O17Rik|H2A.Bbd|H2A.L.2|H2afb1|H2al2|TSEG-1|Tseg1	H2A histone family member L2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-75541704-3	chr9	75541583	75541783	+	833.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357828, intron 1 of 10)	intron (NM_001357828, intron 1 of 10)	17974.0	NM_016963	50875.0	Mm.38445	NM_016963	ENSMUSG00000058587	Tmod3	U-Tmod|UTMOD	tropomodulin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-168230538-4	chr2	168230508	168230708	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310084)	promoter-TSS (NM_001310084)	-14.0	NM_001160330	69372.0	Mm.482182	NM_001160330	ENSMUSG00000074576	Mocs3	1700020H17Rik|Uba4	molybdenum cofactor synthesis 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-58911772-2	chr19	58911672	58911872	+	737.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_037247)	promoter-TSS (NR_037247)	-13.0	NR_037247	100526480.0		NR_037247	ENSMUSG00000092813	Mir3086	mir-3086|mmu-mir-3086	microRNA 3086	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-88033707-4	chr6	88033605	88033805	+	999.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293652, intron 1 of 7)	intron (NM_001293652, intron 1 of 7)	11312.0	NM_001293653	19349.0	Mm.333233	NM_009005	ENSMUSG00000079477	Rab7	Rab7a	RAB7, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-60814645-2	chr10	60814545	60814745	+	569.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029770, intron 1 of 16)	intron (NM_029770, intron 1 of 16)	16936.0	NM_029770	107449.0	Mm.290433	NM_029770	ENSMUSG00000020099	Unc5b	6330415E02Rik|A630020F16|D10Bwg0792e|Unc5h2	unc-5 netrin receptor B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-41081089-4	chr9	41080966	41081166	+	907.6416630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176860, intron 1 of 13)	intron (NM_176860, intron 1 of 13)	-1560.0	NM_001357412	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	3.8196061224746	2.85642537334515	3.50016949865425	4.34387980114453	2.89559110141716	2.07913960922903	3.25829113088848	3.82093039455139	-0.880672047406363	0.171487534850799	0.638977466813629
Merged-chr1-58729203-2	chr1	58729103	58729303	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_207653, intron 3 of 9)	intron (NM_207653, intron 3 of 9)	-1349.0	NM_001293805	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-29647757-4	chr19	29647679	29647879	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362131, intron 1 of 14)	intron (NM_001362131, intron 1 of 14)	636.0	NM_001081213	226090.0	Mm.267131	NM_001081213	ENSMUSG00000046324	Ermp1	D19Ertd410e|D19Wsu12e|Fxna|b2b2633Clo|mKIAA1815	endoplasmic reticulum metallopeptidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-31288772-3	chr17	31288637	31288837	+	575.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6746.0	NM_153062	224674.0	Mm.311395	NM_153062	ENSMUSG00000024036	Slc37a1	G3PP	solute carrier family 37 (glycerol-3-phosphate transporter), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-122720131-3	chr6	122720038	122720238	+	700.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12573.0	NM_001289828	71950.0	Mm.6047	NM_028016	ENSMUSG00000012396	Nanog	2410002E02Rik|ENK|ecat4	Nanog homeobox	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-112950394-4	chr5	112950253	112950453	+	996.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285806, intron 9 of 20)	intron (NM_001285806, intron 9 of 20)	-53991.0	NM_028901	74376.0	Mm.441903	NM_028901	ENSMUSG00000072720	Myo18b	4932408L24Rik|4933411E19Rik|Gm448	myosin XVIIIb	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-85843334-6	chr11	85843271	85843471	+	928.7777710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10756.0	NM_009324	21385.0	Mm.287052	NM_009324	ENSMUSG00000000093	Tbx2	-	T-box 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-55841289-2	chr16	55841189	55841389	+	933.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001134457, exon 6 of 6)	3' UTR (NM_001134457, exon 6 of 6)	-2648.0	NM_001159395	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-34863522-16	chr18	34863401	34863601	+	971.6145630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007913, exon 2 of 2)	exon (NM_007913, exon 2 of 2)	2294.0	NM_007913	13653.0	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-43949023-3	chr5	43948917	43949117	+	922.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32782.0	NM_008009	14181.0	Mm.46053	NM_008009	ENSMUSG00000048373	Fgfbp1	FGF-BP|FGF-BP1|FGFBP-1	fibroblast growth factor binding protein 1	protein-coding	-0.294083384950798	-0.277963382818132	0.430175288204581	-0.287290034214969	-0.293070061983337	-0.276782190008417	0.44311158986884	-0.286577643912737	0.0410571026119648	0.987250810110592	1
Merged-chr4-21929668-1	chr4	21929568	21929768	+	547.0	f1_c57bl6.idr	Intergenic	Intergenic	-1658.0	NM_175234	76132.0	Mm.159689	NM_175234	ENSMUSG00000028246	Faxc	6230409E13Rik|AW742931	failed axon connections homolog	protein-coding	-0.380882242216048	-0.522096428621716	0.367034403117302	-0.529899911892552	-0.376640193009651	-0.521107184817536	-0.525523441672771	-0.529304361547676	-2.73029451213495	0.280757557017103	1
Merged-chr12-84969828-2	chr12	84969728	84969928	+	794.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178065, intron 1 of 19)	intron (NM_178065, intron 1 of 19)	1058.0	NM_178065	68497.0	Mm.24446	NM_178065	ENSMUSG00000042350	Arel1	1110018G07Rik|AI649076|AW610792|Kiaa0317|mKIAA0317	apoptosis resistant E3 ubiquitin protein ligase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116615941-5	chr11	116615935	116616135	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172572, intron 1 of 18)	intron (NM_172572, intron 1 of 18)	8217.0	NM_001167680	217344.0	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-53563442-2	chr19	53563342	53563542	+	565.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	34124.0	NM_001085390	240672.0	Mm.482424	NM_001085390	ENSMUSG00000034765	Dusp5	Gm337	dual specificity phosphatase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-101356759-4	chr4	101356650	101356850	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040708)	promoter-TSS (NR_040708)	-502.0	NR_040708	77866.0	Mm.137053	NR_040708	ENSMUSG00000086782	E130102H24Rik	-	RIKEN cDNA E130102H24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131085436-4	chr1	131085336	131085536	+	804.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008551, intron 1 of 9)	L2a|LINE|L2	12407.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-102948709-4	chr2	102948611	102948811	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47046.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28825165-4	chr7	28825039	28825239	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016772)	promoter-TSS (NM_016772)	-199.0	NM_016772	51798.0	Mm.291776	NM_016772	ENSMUSG00000053898	Ech1	AA617331	enoyl coenzyme A hydratase 1, peroxisomal	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-155696981-1	chr2	155696881	155697081	+	660.0	f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-4597.0	NM_001163452	56407.0	Mm.234944	NM_019828	ENSMUSG00000038324	Trpc4ap	4833429F06Rik|D2Ertd113e|Trrp4ap|mFLJ00177|truss	transient receptor potential cation channel, subfamily C, member 4 associated protein	protein-coding	0.613950142445753	0.0142174479160047	0.205503495470902	1.02805117473964	-0.00594270417709689	0.0157840669002272	0.00877719523575843	0.00275070100590161	-4.19527179492271	0.0474292220134089	1
Merged-chr5-90699148-2	chr5	90699048	90699248	+	846.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58621.0	NM_001310656	73246.0	Mm.30172	NM_028478	ENSMUSG00000029370	Rassf6	1600016B17Rik	Ras association (RalGDS/AF-6) domain family member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-59975423-3	chr13	59975283	59975483	+	910.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54328.0	NR_046142	328263.0	Mm.123405	NR_046142	ENSMUSG00000114531	A530065N20Rik	A530065N20	RIKEN cDNA A530046M15 gene	ncRNA	0.683220053414297	-0.0120007747411952	-0.0173435354726115	-0.0214662508345073	0.541332919207828	-0.0107965075163739	-0.0161650904141777	0.28623456736369	0.108465012382256	0.961792755555332	1
Merged-chr13-20127705-4	chr13	20127589	20127789	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	37182.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94360890-4	chr10	94360788	94360988	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 1 of 4)	L1M4|LINE|L1	48939.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-112232826-4	chr2	112232719	112232919	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-7022.0	NM_207206	99010.0	Mm.33438	NM_207206	ENSMUSG00000027134	Lpcat4	AI505034|Agpat7|Aytl3|LPEAT2	lysophosphatidylcholine acyltransferase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-60677144-1	chr13	60677044	60677244	+	581.0	f1_balb.idr	intron (NM_134062, intron 2 of 26)	B1_Mus1|SINE|Alu	74933.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	0.613317706559239	0.308325428095592	0.136937446756053	0.13370199482995	0.461156102986187	0.142134941989182	0.640287597069558	0.134265160417728	0.377216014392617	0.855056974368084	1
Merged-chr2-11740650-3	chr2	11740540	11740740	+	717.016663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	34928.0	NM_001271500	16169.0	Mm.200196	NM_008358	ENSMUSG00000023206	Il15ra	AA690181|IL-15RA	interleukin 15 receptor, alpha chain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-105273327-4	chr10	105273195	105273395	+	952.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177368, intron 8 of 11)	intron (NM_177368, intron 8 of 11)	301184.0	NM_177368	278279.0	Mm.25225	NM_177368	ENSMUSG00000036019	Tmtc2	8430438D04Rik|D330034A10Rik	transmembrane and tetratricopeptide repeat containing 2	protein-coding	4.56536232178477	5.41986376221815	5.86165806565448	5.44963402890471	5.54715320164854	3.91415351364925	5.91921890696619	5.57293229331247	0.0307393226127774	0.937421759544115	0.998431161219273
Merged-chr4-105483464-1	chr4	105483364	105483564	+	640.0	f0_balb.idr	Intergenic	Intergenic	326117.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	2.43869543030792	2.73448513566308	2.85730546429157	3.30168454532859	2.21479218791816	2.12302476915653	2.97356353533566	2.8840768010584	-0.513715157507993	0.486011735322194	0.932390278285207
Merged-chr2-119156240-4	chr2	119156133	119156333	+	764.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033136, intron 2 of 12)	intron (NM_001033136, intron 2 of 12)	801.0	NM_001033136	67809.0	Mm.475909	NM_001033136	ENSMUSG00000070730	Rmdn3	1200015F23Rik|AI131757|Fam82a2|Ptpip51|RMD-3|Rmd3	regulator of microtubule dynamics 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97420259-4	chr6	97420150	97420350	+	998.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 4 of 23)	intron (NM_145148, intron 4 of 23)	39036.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19674755-2	chr7	19674655	19674855	+	744.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001309795)	promoter-TSS (NM_001309795)	-835.0	NM_001309795	11813.0	Mm.28394	NM_001277944	ENSMUSG00000002992	Apoc2	apo-CII|apoC-II	apolipoprotein C-II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45535497-2	chr7	45535397	45535597	+	905.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_148927, intron 6 of 19)	B3A|SINE|B2	9167.0	NM_148927	69217.0	Mm.274158	NM_148927	ENSMUSG00000040428	Plekha4	2410005C22Rik|C88169|Pepp1	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102747804-3	chr12	102747701	102747901	+	926.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142939, intron 1 of 1)	intron (NM_001142939, intron 1 of 1)	4041.0	NM_177140	320351.0	Mm.86546	NM_177140	ENSMUSG00000046675	Tmem251	D230037D09Rik	transmembrane protein 251	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-57132942-1	chr18	57132842	57133042	+	555.0	f0_c57.idr	promoter-TSS (NM_001001979)	promoter-TSS (NM_001001979)	-148.0	NM_001001979	70417.0	Mm.297863	NM_001001979	ENSMUSG00000024593	Megf10	3000002B06Rik|Gm331	multiple EGF-like-domains 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94462918-4	chr10	94462838	94463038	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 2 of 4)	intron (NM_001359762, intron 2 of 4)	-51919.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-14349789-10	chr14	14349731	14349931	+	922.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008369, intron 5 of 11)	intron (NM_008369, intron 5 of 11)	3336.0	NM_008369	16188.0	Mm.425857	NM_008369	ENSMUSG00000068758	Il3ra	CD123|CDw123|SUT-1	interleukin 3 receptor, alpha chain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-31127396-4	chr2	31127298	31127498	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355105, intron 1 of 15)	RMER10A|LTR|ERVL	14610.0	NM_001355106	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41347516-3	chr19	41347445	41347645	+	881.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 2 of 16)	intron (NM_031376, intron 2 of 16)	37525.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-61330936-4	chr9	61330843	61331043	+	986.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37134.0	NR_045334	622037.0	Mm.126243	NR_045334	ENSMUSG00000111658	B930092H01Rik	-	RIKEN cDNA B930092H01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-86174151-3	chr5	86174043	86174243	+	663.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3B|LINE|L1	-1400.0	NM_172712	231380.0	Mm.34012	NM_172712	ENSMUSG00000035898	Uba6	4930542H01|5730469D23Rik|AU021846|AW124799|E1-L2|Ube1l2	ubiquitin-like modifier activating enzyme 6	protein-coding	1.85121743222154	2.10458221478959	1.91024483515699	0.995224377798718	1.76261505114743	1.04415910460636	1.02000598029167	2.53863324896516	-0.0160949043709614	0.989752170334637	0.998431161219273
Merged-chr1-87811717-2	chr1	87811617	87811817	+	588.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_009118, intron 3 of 15)	L1MD1|LINE|L1	8037.0	NM_009118	20215.0	Mm.1276	NM_009118	ENSMUSG00000056055	Sag	A930001K18Rik|Arr1|Irbp|arrestin	S-antigen, retina and pineal gland (arrestin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-77032610-2	chr14	77032496	77032696	+	595.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172488, intron 5 of 7)	L1MB3|LINE|L1	4021.0	NM_172488	210808.0	Mm.89278	NM_172488	ENSMUSG00000044350	Lacc1	9030625A04Rik	laccase domain containing 1	protein-coding	2.30192912556087	1.61438132500632	2.72797035759302	1.95637058895913	2.32263002028964	1.12977835048412	1.10201380653671	1.32204336230472	-1.58066058544979	0.160555281368581	0.620466695037653
Merged-chr10-96618395-4	chr10	96618313	96618513	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007569, exon 2 of 2)	exon (NM_007569, exon 2 of 2)	1412.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-92337094-4	chr13	92337006	92337206	+	965.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311120, intron 8 of 23)	(CACCT)n|Simple_repeat|Simple_repeat	-17677.0	NM_010049	13361.0	Mm.23695	NM_010049	ENSMUSG00000021707	Dhfr	8430436I03Rik|AA607882|AI662710|AW555094	dihydrofolate reductase	protein-coding	2.86248327940838	2.93533182844096	3.01888453868046	3.15855457266155	1.86916089946858	2.85001519371164	1.80222182295433	2.67011531535355	-1.21659011082532	0.106716139666776	0.51038277055088
Merged-chr4-147397092-2	chr4	147396992	147397192	+	659.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039209, intron 1 of 2)	Lx2B2|LINE|L1	-156185.0	NM_001014397	433804.0	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154	zinc finger protein 985	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116671285-2	chr11	116671185	116671385	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027819)	promoter-TSS (NR_027819)	-375.0	NR_027821	66293.0	Mm.432051	NM_025472	ENSMUSG00000020812	1810032O08Rik	-	RIKEN cDNA 1810032O08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139386466-2	chr5	139386366	139386566	+	879.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_030258, intron 1 of 1)	intron (NM_030258, intron 1 of 1)	-3438.0	NM_001038703	80290.0	Mm.270003	NM_030258	ENSMUSG00000044197	Gpr146	BC003323|D830046C22Rik|PGR8	G protein-coupled receptor 146	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-68058131-1	chr10	68058031	68058231	+	835.666687	f0_balb.idr	Intergenic	Charlie1|DNA|hAT-Charlie	78561.0	NM_001359319	170799.0	Mm.209844	NM_133244	ENSMUSG00000037846	Rtkn2	B130039D23Rik|Mbf|Plekhk1	rhotekin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-60657244-4	chr1	60657143	60657343	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-89145.0	NM_007642	12487.0	Mm.255003	NM_007642	ENSMUSG00000026012	Cd28	-	CD28 antigen	protein-coding	3.96837053157912	3.93032804689925	3.9385655723137	4.71363091499443	3.66909568358419	2.68094625638856	3.49996053574199	3.71477114475959	-1.03044030372951	0.0425974671702852	0.295896347983957
Merged-chr6-95098563-4	chr6	95098509	95098709	+	728.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19022.0	NR_153843	102634268.0	Mm.396160	NR_153843		Kbtbd8os	1700010K10Rik	kelch repeat and BTB (POZ) domain containing 8, opposite strand	ncRNA	-1.0197847170788	-0.997907469650695	-1.01122437597739	-0.133164474989291	-1.01910344542556	-0.995021640496898	-1.0082097202833	-1.01474285911258	-3.16350991712545	0.326819850740887	1
Merged-chr10-122738117-3	chr10	122738045	122738245	+	835.533325	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110218, intron 1 of 9)	GA-rich|Low_complexity|Low_complexity	58830.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-174443278-2	chr2	174443178	174443378	+	597.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4239.0	NM_022325	64138.0	Mm.156919	NM_022325	ENSMUSG00000016256	Ctsz	AI787083|AU019819|CTSX|D2Wsu143e	cathepsin Z	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117376984-4	chr10	117376884	117377084	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310609)	promoter-TSS (NM_001310609)	-11.0	NM_001310609	432508.0	Mm.478881	NM_001013391	ENSMUSG00000055531	Cpsf6	4733401N12Rik|AI256641|CFIM|CFIM68|HPBRII-4|HPBRII-7	cleavage and polyadenylation specific factor 6	protein-coding	5.66977117377241	5.56049145193279	5.54488203902396	5.23564263593046	5.93427879034441	5.94827733600276	5.76278574243593	5.40777813578411	0.299799208168215	0.253789522484279	0.751694505775946
Merged-chr13-49242904-4	chr13	49242791	49242991	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028340, intron 1 of 4)	intron (NM_028340, intron 1 of 4)	5403.0	NM_001360772	66329.0	Mm.34308	NM_025491	ENSMUSG00000021384	Susd3	1700017I11Rik|2810440J20Rik	sushi domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-45192773-3	chr16	45192676	45192876	+	824.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-31561.0	NM_001037719	208154.0	Mm.38199	NM_177584	ENSMUSG00000052013	Btla	A630002H24	B and T lymphocyte associated	protein-coding	2.36349891351376	2.85594983813331	2.15254764967977	2.68711492924081	2.38248571314599	2.87639786076818	2.16839390982311	2.70053346449743	0.0368733124718685	0.961587645718859	0.998431161219273
Merged-chr2-68826430-1	chr2	68826330	68826530	+	564.0	f0_balb.idr	Intergenic	Lx5c|LINE|L1	-35011.0	NM_172856	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80098783-4	chr10	80098669	80098869	+	982.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359637, intron 1 of 3)	intron (NM_001359637, intron 1 of 3)	2418.0	NM_001359635	216161.0	Mm.262102	NM_183426	ENSMUSG00000035673	Sbno2	BC019206|F730040C21|Sno|Stno	strawberry notch 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-51914005-1	chr6	51913905	51914105	+	602.0	f0_balb.idr	intron (NM_018773, intron 6 of 12)	ORR1F|LTR|ERVL-MaLR	98544.0	NM_018773	54353.0	Mm.221479	NM_018773	ENSMUSG00000059182	Skap2	2610021A10Rik|AA960083|BB137539|RA70|SKAP-HOM|Saps|Scap2|mSKAP55R	src family associated phosphoprotein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-95710395-3	chr16	95710255	95710455	+	694.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011809, intron 3 of 9)	RLTR17B_Mm|LTR|ERVK	7948.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72155912-3	chr6	72155845	72156045	+	952.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-32748.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129623938-4	chr4	129623849	129624049	+	955.270874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025455)	promoter-TSS (NM_025455)	-41.0	NM_025455	66264.0	Mm.383215	NM_025455	ENSMUSG00000028795	Ccdc28b	1110002E08Rik|1810010N17Rik	coiled coil domain containing 28B	protein-coding	2.90324797845641	2.74836770797734	1.50312411524245	2.44619111810002	2.4563918271031	2.63342210985687	3.25417924060358	3.77686151433801	1.15581982022833	0.13974666464682	0.583802396390163
Merged-chr16-33916859-2	chr16	33916759	33916959	+	817.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 9 of 14)	intron (NM_001145884, intron 9 of 14)	50179.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-54314620-2	chr10	54314520	54314720	+	591.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	238698.0	NR_038016	100502920.0	Mm.403982	NR_038016	ENSMUSG00000097069	Gm16998	-	predicted gene, 16998	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-170895389-2	chr1	170895289	170895489	+	787.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9849.0	NM_023173	80915.0	Mm.34365	NM_023173	ENSMUSG00000026659	Dusp12	1190004O14Rik|AA027408|AW049275|ESTM36|LMW-DSP4|T-DSP4|VH1|mVH1	dual specificity phosphatase 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-24442202-2	chr18	24442102	24442302	+	607.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13032.0	NR_029573	387182.0		NR_029573	ENSMUSG00000065532	Mir187	Mirn187|mir-187|mmu-mir-187	microRNA 187	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-85028829-4	chr8	85028710	85028910	+	841.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026760, intron 1 of 2)	intron (NM_026760, intron 1 of 2)	1977.0	NM_026760	68544.0	Mm.196005	NM_026760	ENSMUSG00000041203	Trir	1110002H14Rik|2310036O22Rik|AI854688	telomerase RNA component interacting RNase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-74362333-4	chr13	74362266	74362466	+	966.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001168658, exon 4 of 4)	3' UTR (NM_001168658, exon 4 of 4)	1634.0	NM_001033042	432779.0	Mm.324679	NM_001033042	ENSMUSG00000021579	Lrrc14b	AI595366	leucine rich repeat containing 14B	protein-coding	2.06994334127825	1.52976848589107	2.19873614745721	1.27345936936209	1.36084809902743	1.16424706457938	0.892008901115059	0.87528790382442	-2.69883434277711	0.0367824755196027	0.272305311364167
Merged-chr17-33629392-4	chr17	33629287	33629487	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026712, intron 1 of 5)	intron (NM_026712, intron 1 of 5)	295.0	NM_026712	328801.0	Mm.181488	NM_026712	ENSMUSG00000073423	Zfp414	0610030H11Rik|Znf414	zinc finger protein 414	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-53883293-3	chr1	53883177	53883377	+	706.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001883, intron 17 of 28)	CT-rich|Low_complexity|Low_complexity	33853.0	NR_106149	102465783.0		NR_106149	ENSMUSG00000098443	Mir7681	Gm27806|mmu-mir-7681	microRNA 7681	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-146134478-3	chr2	146134377	146134577	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-87520.0	NM_016889	53626.0	Mm.379070	NM_016889	ENSMUSG00000068154	Insm1	IA-1	insulinoma-associated 1	protein-coding	3.94652823848257	3.35394334316599	2.50379592758	2.59504384966289	4.80605849491721	3.592328787306	4.47783007616563	4.11698865655398	1.51931669843446	0.00678910542508109	0.0834017271912522
Merged-chr9-107338409-4	chr9	107338315	107338515	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133984)	promoter-TSS (NM_133984)	-65.0	NM_133984	69536.0	Mm.259467	NM_133984	ENSMUSG00000032579	Hemk1	2310008M14Rik|AW049265	HemK methyltransferase family member 1	protein-coding	3.75557734436339	4.76002928927171	5.33740082755092	4.4412368584149	4.8114886787237	5.27799018300576	4.43557889909291	4.64892179190529	0.17580736603884	0.669387142587274	0.993577811443337
Merged-chr17-23771672-4	chr17	23771563	23771763	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153791)	promoter-TSS (NM_153791)	-61.0	NM_001357994	224613.0	Mm.328835	NM_153791	ENSMUSG00000040097	Flywch1	E030034P13Rik|mKIAA1552	FLYWCH-type zinc finger 1	protein-coding	5.47544075917553	6.39454124856338	5.68941985411389	5.07635491132227	6.14515714434345	5.21328445349237	5.17226141706758	6.8591019746406	0.322021432658954	0.549110894692361	0.958545631969191
Merged-chr8-83783327-4	chr8	83783203	83783403	+	943.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41992.0	NM_001163031	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-87247495-2	chr6	87247395	87247595	+	996.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_054041, intron 10 of 17)	intron (NM_054041, intron 10 of 17)	88280.0	NM_054041	69538.0	Mm.232525	NM_054041	ENSMUSG00000033420	Antxr1	2310008J16Rik|2810405N18Rik|Antrx1|Tem8	anthrax toxin receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-105045418-5	chr3	105045184	105045384	+	762.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030249, intron 1 of 5)	intron (NM_030249, intron 1 of 5)	7669.0	NM_001163332	80281.0	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-42073461-4	chr13	42073339	42073539	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007772, intron 2 of 8)	intron (NM_007772, intron 2 of 8)	21418.0	NM_007772	110521.0	Mm.4808	NM_007772	ENSMUSG00000021366	Hivep1	Cryabp1	human immunodeficiency virus type I enhancer binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-118596184-2	chr6	118596084	118596284	+	546.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001255999, exon 46 of 47)	exon (NM_001255999, exon 46 of 47)	-33928.0	NM_001081112	232339.0	Mm.276116	NM_001081112	ENSMUSG00000007827	Ankrd26	5730521P14Rik|BC008111|mKIAA1074	ankyrin repeat domain 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71349745-2	chr8	71349645	71349845	+	672.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001142322, intron 22 of 39)	intron (NM_001142322, intron 22 of 39)	-17103.0	NM_001145780	67023.0	Mm.41890	NM_025917	ENSMUSG00000002395	Use1	2010315L10Rik|5730403H22Rik|AV002165|D12|Ed2|Q-snare|p31	unconventional SNARE in the ER 1 homolog (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70004751-2	chr11	70004651	70004851	+	793.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007888, intron 1 of 14)	B1_Mus1|SINE|Alu	4125.0	NM_007888	13543.0	Mm.5114	NM_007888	ENSMUSG00000020888	Dvl2	-	dishevelled segment polarity protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-48412304-2	chr17	48412204	48412404	+	572.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_207219, intron 3 of 5)	B1_Mur1|SINE|Alu	1854.0	NM_001357904	106821.0	Mm.203943	NM_207219	ENSMUSG00000040771	Oard1	AI314976|AW558560	O-acyl-ADP-ribose deacylase 1	protein-coding	-0.939689859171677	-0.920375438977221	-0.931299611472457	0.0547743973239929	-0.938904031919501	-0.917255548672094	-0.930407580667812	-0.933885285392914	-3.35597997027105	0.279004136702824	1
Merged-chr14-70865703-2	chr14	70865602	70865802	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045939, intron 2 of 3)	intron (NR_045939, intron 2 of 3)	12769.0	NR_045939	73648.0	Mm.410851	NR_045939	ENSMUSG00000099528	2410012E07Rik	-	RIKEN cDNA 2410012E07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-119982526-4	chr9	119982415	119982615	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153287, intron 1 of 4)	intron (NM_153287, intron 1 of 4)	508.0	NM_001357560	215418.0	Mm.491094	NM_153287	ENSMUSG00000032515	Csrnp1	4931429D10Rik|Axud1|CSRNP-1|URAX1|taip-3	cysteine-serine-rich nuclear protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-105400028-2	chr5	105399928	105400128	+	794.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-15747.0	NM_001033550	433926.0	Mm.439781	NM_001033550	ENSMUSG00000070639	Lrrc8b	2210408K08Rik|R75581|Ta-lrrp|mKIAA0231	leucine rich repeat containing 8 family, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-121229381-2	chr6	121229281	121229481	+	594.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16525.0	NM_011909	24110.0	Mm.326911	NM_011909	ENSMUSG00000030107	Usp18	1110058H21Rik|AW047653|UBP43|Ubp15	ubiquitin specific peptidase 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72517122-2	chr6	72517022	72517222	+	599.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27269.0	NM_007599	12332.0	Mm.18626	NM_007599	ENSMUSG00000056737	Capg	gCap39|mbh1	capping protein (actin filament), gelsolin-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-109692921-4	chr8	109692831	109693031	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155034, intron 1 of 10)	CpG	363.0	NR_155034	71955.0	Mm.290036	NM_028018	ENSMUSG00000031729	Ist1	2400003C14Rik|AW536298|mKIAA0174	increased sodium tolerance 1 homolog (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-7569161-4	chr9	7569076	7569276	+	897.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008611)	TTS (NM_008611)	-2220.0	NM_001310717	234911.0	Mm.334940	NM_001030289	ENSMUSG00000070323	Mmp27	Gm180	matrix metallopeptidase 27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-37749776-3	chr13	37749700	37749900	+	825.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-76238.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	2.24733116649643	1.60043975973603	1.12186832435219	2.02910038712266	2.1939023616461	1.61167965467528	1.12707258897567	2.2284271147967	0.128887665984325	0.910354521873208	0.998431161219273
Merged-chr9-50462557-4	chr9	50462449	50462649	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31976.0	NM_029639	76509.0	Mm.29959	NM_029639	ENSMUSG00000032068	Plet1	0610037B23Rik|1600029D21Rik|AA407923|AU043048	placenta expressed transcript 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-6470785-2	chr18	6470678	6470878	+	680.25	f0_balb.idr|f1_balb.idr	intron (NM_007935, intron 1 of 13)	intron (NM_007935, intron 1 of 13)	19868.0	NR_035446	100316773.0		NR_035446	ENSMUSG00000084514	Mir1893	Mirn1893|mmu-mir-1893	microRNA 1893	ncRNA	2.05391443840698	1.34549663189159	1.5012673583932	1.27512681267531	2.35769138885573	1.09668140517587	2.34671732220678	1.62680494182628	1.06293008762607	0.345130421533232	0.845824907532742
Merged-chr1-86486880-3	chr1	86486743	86486943	+	717.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-39714.0	NR_153834	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-33824235-4	chr6	33824141	33824341	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009148, intron 12 of 17)	intron (NM_009148, intron 12 of 17)	-205207.0	NM_028886	74354.0	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100446492-4	chr7	100446385	100446585	+	993.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001017985, intron 28 of 32)	intron (NM_001017985, intron 28 of 32)	-26506.0	NM_009464	22229.0	Mm.6254	NM_009464	ENSMUSG00000032942	Ucp3	AI645527|Slc25a9|UCP-3	uncoupling protein 3 (mitochondrial, proton carrier)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-57445252-2	chr17	57445152	57445352	+	588.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355722, intron 15 of 22)	intron (NM_001355722, intron 15 of 22)	86566.0	NM_010130	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-69473115-4	chr12	69473000	69473200	+	941.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038060, intron 2 of 4)	intron (NR_038060, intron 2 of 4)	2450.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-60867848-7	chr8	60867730	60867930	+	912.11908	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22563.0	NM_028299	72612.0	Mm.25263	NM_028299	ENSMUSG00000038005	Hpf1	2700029M09Rik|C230006B22Rik|C4orf27	histone PARylation factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-122056966-4	chr14	122056854	122057054	+	999.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22280.0	NM_001037744	223262.0	Mm.297637	NM_001037744	ENSMUSG00000071229	Timm8a2	-	translocase of inner mitochondrial membrane 8A2	protein-coding	2.23857342241342	2.82486311752259	3.52244036320312	2.64498970101223	3.07939509649377	2.37685356265782	3.97802078536501	2.38295701658079	0.422817615851846	0.568471871517018	0.962718661854691
Merged-chr7-123226476-2	chr7	123226376	123226576	+	704.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_146198, intron 1 of 16)	MTD|LTR|ERVL-MaLR	11610.0	NM_146198	233836.0	Mm.211838	NM_146198	ENSMUSG00000030769	Slc5a11	2010013B02Rik|Kst1|RKST2|SMIT2|Slc5a10	solute carrier family 5 (sodium/glucose cotransporter), member 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-101886226-4	chr2	101886161	101886361	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029635)	promoter-TSS (NM_029635)	-1.0	NM_029635	76501.0	Mm.330424	NM_029635	ENSMUSG00000027163	Commd9	1810029F08Rik|AA409293	COMM domain containing 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-93602599-2	chr2	93602499	93602699	+	738.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39835.0	NM_007442	11695.0	Mm.389389	NM_007442	ENSMUSG00000040310	Alx4	lst	aristaless-like homeobox 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-40316680-3	chr10	40316590	40316790	+	884.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-14502.0	NM_009665	11702.0	Mm.253533	NM_009665	ENSMUSG00000075232	Amd1	AdoMetDC|Amd-1|SAMDC|SAMDC 1|adoMetDC1	S-adenosylmethionine decarboxylase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-153262938-4	chr3	153262838	153263038	+	932.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011372, intron 3 of 4)	intron (NM_011372, intron 3 of 4)	35711.0	NR_126464	75489.0	Mm.443252	NR_126464	ENSMUSG00000105023	1700012D16Rik	-	RIKEN cDNA 1700012D16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-65391532-4	chr2	65391414	65391614	+	973.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-27114.0	NR_105755	102466151.0		NR_105755	ENSMUSG00000099184	Mir6337	Gm27877|mmu-mir-6337	microRNA 6337	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-103955879-4	chr2	103955791	103955991	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11B|LTR|ERVK	-2104.0	NM_001142337	16909.0	Mm.29266	NM_008505	ENSMUSG00000032698	Lmo2	Rbtn-2|Rbtn2|Rhom-2|Ttg2	LIM domain only 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-77943912-2	chr18	77943812	77944012	+	553.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001195633, intron 1 of 43)	B2_Mm2|SINE|B2	5445.0	NM_001195633	100502841.0	Mm.297782	NM_001195633	ENSMUSG00000039840	Epg5	4732475F16|5430411K18Rik|AI661957|AW456499|mKIAA1632	ectopic P-granules autophagy protein 5 homolog (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-25677484-2	chr17	25677384	25677584	+	631.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39688.0	NM_022422	64337.0	Mm.171123	NM_022422	ENSMUSG00000025739	Gng13	1500031D04Rik|AB030194|Ggamma13	guanine nucleotide binding protein (G protein), gamma 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-125085146-4	chr4	125085082	125085282	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290701)	promoter-TSS (NM_001290701)	48.0	NR_151472	70088.0	Mm.291214	NM_027310	ENSMUSG00000028863	Meaf6	2310005N01Rik|2810036M01Rik	MYST/Esa1-associated factor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35780525-4	chr17	35780400	35780600	+	979.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045459, exon 3 of 3)	non-coding (NR_045459, exon 3 of 3)	8050.0	NR_045459	74601.0	Mm.410840	NR_045459	ENSMUSG00000092171	4833427F10Rik	-	RIKEN cDNA 4833427F10 gene	ncRNA	3.65942881436287	2.7068998548324	3.01773527478429	3.03822052215489	3.51968658701635	3.36837499440419	2.91964125761464	4.26758322073913	0.712976110147106	0.240689836551462	0.736808128664172
Merged-chr18-47366925-2	chr18	47366825	47367025	+	818.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001311097, intron 1 of 17)	CpG	1943.0	NM_018744	20358.0	Mm.40909	NM_018744	ENSMUSG00000019647	Sema6a	A730020P05Rik|AI851735|Sema6A-1|Semaq|VIa	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-137935512-2	chr4	137935412	137935612	+	974.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_199307, intron 6 of 19)	(TCTG)n|Simple_repeat|Simple_repeat	-57944.0	NM_001256198	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	0.672665943129493	-0.206133852176114	-0.211585788964535	-0.215809149841912	0.385335079247801	-0.204908257831483	-0.210381210849647	-0.215070244540909	-0.787392709509075	0.754602388917587	1
Merged-chr19-53309567-2	chr19	53309467	53309667	+	599.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001008542)	promoter-TSS (NM_001008542)	-939.0	NM_001008542	17859.0	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171387916-2	chr1	171387809	171388009	+	721.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_027893, exon 9 of 9)	3' UTR (NM_027893, exon 9 of 9)	-1051.0	NM_001005508	226652.0	Mm.251048	NM_001005508	ENSMUSG00000048865	Arhgap30	6030405P05Rik|Gm102|mFLJ00267	Rho GTPase activating protein 30	protein-coding	1.83593698015952	1.90130041145319	0.881744283460534	1.95061164410581	1.20677327303169	1.6734791591422	0.885813130788441	0.869853213438333	-1.73538136828354	0.196088034889469	0.67745443837728
Merged-chr11-97436104-4	chr11	97436052	97436252	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14008.0	NM_021493	58996.0	Mm.394118	NM_021493	ENSMUSG00000049807	Arhgap23	A330041B18Rik	Rho GTPase activating protein 23	protein-coding	3.56164460336473	4.21879772537992	3.7182025228853	4.26075665294442	3.81740229169223	2.9427136238297	3.32218114234987	2.21666635581114	-1.127109684454	0.0507891405601483	0.328115264475704
Merged-chr6-50559038-2	chr6	50558938	50559138	+	949.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7436.0	NM_007808	13063.0	Mm.35389	NM_007808	ENSMUSG00000063694	Cycs	-	cytochrome c, somatic	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-152398188-4	chr2	152398075	152398275	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011438)	promoter-TSS (NM_011438)	-129.0	NM_011438	20667.0	Mm.28424	NM_011438	ENSMUSG00000051817	Sox12	2010205A02Rik	SRY (sex determining region Y)-box 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-34019976-4	chr3	34019871	34020071	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113188)	promoter-TSS (NM_001113188)	-108.0	NM_008053	14359.0	Mm.259021	NM_008053	ENSMUSG00000027680	Fxr1	1110050J02Rik|9530073J07Rik|AI851072|Fxr1h|Fxr1p	fragile X mental retardation gene 1, autosomal homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-113186185-2	chr7	113186085	113186285	+	593.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21280.0	NM_001243048	11865.0	Mm.33970	NM_007489	ENSMUSG00000055116	Arntl	Arnt3|BMAL1b|Bmal1|MOP3|bHLHe5|bmal1b'	aryl hydrocarbon receptor nuclear translocator-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-8998205-1	chr3	8998105	8998305	+	594.5	f1_balb.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	5999.0	NM_001357073	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	0.25023288997371	0.0203550569564398	0.0158158220840904	0.403912171732268	0.450326367603098	0.0213818473283457	0.0168147575980478	0.409436810026565	0.474552490072684	0.823145378888345	1
Merged-chr11-117878999-4	chr11	117878914	117879114	+	976.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5488.0	NM_027919	71776.0	Mm.3200	NM_027919	ENSMUSG00000017713	Tha1	1300017K07Rik|GLY1	threonine aldolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111537108-2	chr12	111537008	111537208	+	998.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173363)	promoter-TSS (NM_173363)	-993.0	NM_178041	217869.0	Mm.271222	NM_173363	ENSMUSG00000021282	Eif5	2810011H21Rik|D12Ertd549e	eukaryotic translation initiation factor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-30995831-4	chr3	30995755	30995955	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008857)	promoter-TSS (NM_008857)	84.0	NM_008857	18759.0	Mm.291554	NM_008857	ENSMUSG00000037643	Prkci	2310021H13Rik|AI427505|PKClambda|Pkci|Pkcl|Prkcl|aPKClambda|mKIAA4165	protein kinase C, iota	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-118831739-3	chr14	118831661	118831861	+	905.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160097, intron 1 of 3)	intron (NM_001160097, intron 1 of 3)	-23189.0	NM_021386	58187.0	Mm.390755	NM_021386	ENSMUSG00000022132	Cldn10	6720456I16Rik|Cldn10a|Cldn10b|D14Ertd728e	claudin 10	protein-coding	0.109671427328855	0.127261267523298	0.683339269316376	0.11704856053532	0.255443414225436	0.623659141531215	0.12276643661915	0.651105938613906	1.00142341681343	0.623898676940791	1
Merged-chr6-5411106-4	chr6	5410971	5411171	+	932.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355662, intron 2 of 4)	intron (NM_001355662, intron 2 of 4)	20661.0	NM_001355662	65255.0	Mm.51340	NM_023048	ENSMUSG00000042607	Asb4	8430401O13Rik|AV117194|AW060255	ankyrin repeat and SOCS box-containing 4	protein-coding	-0.146665502901626	-0.130058713109158	-0.135482821853071	-0.139678460975991	0.446736778713737	0.6275857386436	0.0543145331776217	-0.13894479523385	3.95548664349997	0.0798473996338338	1
Merged-chr17-46782609-4	chr17	46782476	46782676	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025433)	promoter-TSS (NM_025433)	80.0	NM_025433	66229.0	Mm.218533	NM_025433	ENSMUSG00000063888	Rpl7l1	1500016H10Rik	ribosomal protein L7-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-66087207-4	chr5	66087110	66087310	+	998.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139065, intron 2 of 6)	intron (NM_139065, intron 2 of 6)	10969.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-52044253-2	chr16	52044153	52044353	+	560.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033238, intron 2 of 17)	intron (NM_001033238, intron 2 of 17)	12704.0	NM_001033238	208650.0	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-136165459-2	chr3	136165356	136165556	+	590.75	f0_balb.idr|f1_c57bl6.idr	intron (NM_001033350, intron 7 of 16)	intron (NM_001033350, intron 7 of 16)	160610.0	NM_001310749	242248.0	Mm.30832	NM_001033350	ENSMUSG00000037922	Bank1	A530094C12Rik|AI451642|AVIEF|BANK	B cell scaffold protein with ankyrin repeats 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-51633453-2	chr11	51633353	51633553	+	598.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025346, intron 1 of 9)	RSINE1|SINE|B4	2443.0	NM_025346	66089.0	Mm.288183	NM_025346	ENSMUSG00000001054	Rmnd5b	0610039K22Rik|Gid2	required for meiotic nuclear division 5 homolog B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95517515-5	chr3	95517303	95517503	+	861.659973	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9383.0	NM_021281	13040.0	Mm.3619	NM_021281	ENSMUSG00000038642	Ctss	Cats	cathepsin S	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-91599796-3	chr13	91599684	91599884	+	962.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360776, intron 4 of 15)	MTC|LTR|ERVL-MaLR	138687.0	NM_024186	66970.0	Mm.343095	NM_024186	ENSMUSG00000003992	Ssbp2	1500004K09Rik|2310079I02Rik|9330163K02Rik|A830008M03Rik|AU067692|AW558684|Hspc116|SSDP2	single-stranded DNA binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-45042043-2	chr19	45041943	45042143	+	625.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001195265, intron 1 of 15)	B1_Mur2|SINE|Alu	3729.0	NM_001195265	100503041.0	Mm.329877	NM_177605	ENSMUSG00000074818	Pdzd7	9130207N01|EG435601|Pdzk7	PDZ domain containing 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-37530263-2	chr19	37530163	37530363	+	660.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-20155.0	NM_175353	107371.0	Mm.24865	NM_175353	ENSMUSG00000053799	Exoc6	4833405E05Rik|AW413330|C430002C19|Sec15|Sec15l1|hbd|msec15	exocyst complex component 6	protein-coding	-1.3681463318974	-1.33624156493372	-1.34650167276047	-0.80669348975676	-1.36769697821496	-1.33401815676661	-1.34417900924365	-1.3534210303531	-2.3580830592467	0.49586638340111	1
Merged-chr15-80707210-4	chr15	80707114	80707314	+	957.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4099.0	NM_144812	213988.0	Mm.131328	NM_144812	ENSMUSG00000047888	Tnrc6b	2700090M07Rik|A730065C02Rik|AI848765|D230019K20Rik	trinucleotide repeat containing 6b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-88243966-2	chr7	88243866	88244066	+	569.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	AT_rich|Low_complexity|Low_complexity	-34119.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-112233602-1	chr7	112233502	112233702	+	860.0	f0_balb.idr	intron (NM_001193305, intron 1 of 25)	intron (NM_001193305, intron 1 of 25)	7766.0	NM_001193305	320878.0	Mm.52312	NM_177282	ENSMUSG00000038244	Mical2	5330438E18Rik|9530064J02|MICAL-2|mKIAA0750	microtubule associated monooxygenase, calponin and LIM domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-29371059-2	chr19	29370959	29371159	+	998.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_021893, intron 1 of 6)	intron (NM_021893, intron 1 of 6)	3621.0	NM_021893	60533.0	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21493903-2	chr9	21493803	21494003	+	560.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039520, intron 14 of 20)	intron (NM_001039520, intron 14 of 20)	2661.0	NR_029585	387194.0		NR_029585	ENSMUSG00000065547	Mir199a-1	Mirn199|Mirn199a-1|mir-199a-1	microRNA 199a-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-74040158-3	chr13	74040062	74040262	+	962.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_028959, exon 11 of 12)	exon (NM_028959, exon 11 of 12)	22123.0	NM_028959	74470.0	Mm.73234	NM_028959	ENSMUSG00000021572	Cep72	2610029E11Rik|4933440J22Rik	centrosomal protein 72	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-100579004-2	chr5	100578904	100579104	+	692.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6799.0	NM_139198	231507.0	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25649938-4	chr7	25649820	25650020	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007533, intron 1 of 8)	intron (NM_007533, intron 1 of 8)	8841.0	NM_007533	12039.0	Mm.25848	NM_007533	ENSMUSG00000060376	Bckdha	-	branched chain ketoacid dehydrogenase E1, alpha polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-3932072-4	chr11	3931956	3932156	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015749)	promoter-TSS (NM_015749)	-12.0	NM_015749	21452.0	Mm.20948	NM_015749	ENSMUSG00000020432	Tcn2	AW208754|Tcn-2	transcobalamin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-38808449-3	chr6	38808350	38808550	+	722.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010433, intron 2 of 14)	intron (NM_010433, intron 2 of 14)	28861.0	NM_001136065	15258.0	Mm.23790	NM_010433	ENSMUSG00000061436	Hipk2	1110014O20Rik|B230339E18Rik|Stank	homeodomain interacting protein kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-35765538-4	chr16	35765440	35765640	+	922.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153550, intron 1 of 8)	MER57-int|LTR|ERV1	3816.0	NM_153550	224132.0	Mm.24094	NM_153550	ENSMUSG00000022848	Dirc2	RCC4	disrupted in renal carcinoma 2 (human)	protein-coding	5.4640302956361	4.61676700218454	5.19780469138647	5.9327059540008	6.11575321051934	5.769536578757	5.40252973233866	6.50802703035345	0.698175174054298	0.030644314601462	0.24104271410949
Merged-chr17-57290385-5	chr17	57290293	57290493	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163816, intron 1 of 25)	intron (NM_001163816, intron 1 of 25)	11293.0	NM_001163815	22324.0	Mm.248172	NM_011691	ENSMUSG00000034116	Vav1	Vav|vav-T	vav 1 oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-82889927-2	chr11	82889827	82890027	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001277941, intron 2 of 8)	intron (NM_001277941, intron 2 of 8)	697.0	NR_102719	19364.0	Mm.9286	NM_011235	ENSMUSG00000018841	Rad51d	R51H3|Rad51l3|TRAD|Trad-d5	RAD51 paralog D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118512852-3	chr9	118512743	118512943	+	704.383362	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018748, intron 1 of 23)	intron (NM_018748, intron 1 of 23)	6525.0	NM_018748	54214.0	Mm.10409	NM_018748	ENSMUSG00000038708	Golga4	AI225887|AU019508|Olp-1	golgi autoantigen, golgin subfamily a, 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-48318154-2	chr17	48318054	48318254	+	620.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177083, intron 2 of 5)	MTE2b|LTR|ERVL-MaLR	1992.0	NM_177083	320148.0	Mm.123455	NM_177083	ENSMUSG00000043740	B430306N03Rik	Treml6	RIKEN cDNA B430306N03 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-75433434-2	chr9	75433334	75433534	+	803.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-8090.0	NM_001039522	235497.0	Mm.41508	NM_001006122	ENSMUSG00000042487	Leo1	Gm185	Leo1, Paf1/RNA polymerase II complex component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-98046579-4	chr3	98046490	98046690	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010928, intron 1 of 33)	MIR3|SINE|MIR	33052.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-100053421-2	chr15	100053321	100053521	+	701.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159361, intron 1 of 37)	intron (NM_001159361, intron 1 of 37)	14757.0	NM_001159361	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-82757803-2	chr16	82757703	82757903	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13C2|LTR|ERVK	1557106.0	NM_010954	17968.0	Mm.433941	NM_010954	ENSMUSG00000022762	Ncam2	Ncam-2|Ocam|RNCAM	neural cell adhesion molecule 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-105499676-2	chr14	105499576	105499776	+	689.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045921, intron 1 of 2)	intron (NR_045921, intron 1 of 2)	888.0	NR_045921	74864.0	Mm.159344	NR_045921	ENSMUSG00000022116	4930449E01Rik	-	RIKEN cDNA 4930449E01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-19005707-2	chr10	19005607	19005807	+	897.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_009397, exon 6 of 9)	exon (NM_009397, exon 6 of 9)	6256.0	NM_001166402	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-84337461-4	chr12	84337374	84337574	+	792.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144833, intron 8 of 11)	intron (NM_144833, intron 8 of 11)	20615.0	NM_001252583	52708.0	Mm.255150	NM_144833	ENSMUSG00000042472	Zfp410	Apa1|D12Ertd748e|Znf410	zinc finger protein 410	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-51584745-4	chr11	51584666	51584866	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028398)	promoter-TSS (NM_028398)	9.0	NM_028398	72947.0	Mm.256875	NM_028398	ENSMUSG00000020359	Phykpl	2900006B13Rik|Agxt2l2	5-phosphohydroxy-L-lysine phospholyase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-134098049-2	chr4	134097944	134098144	+	706.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-2971.0	NM_013706	23833.0	Mm.24130	NM_013706	ENSMUSG00000000682	Cd52	AI463198|B7|B7-Ag|CAMPATH-1|CLS1|MB7	CD52 antigen	protein-coding	0.802696812500046	0.661476782629869	1.20867905690908	1.01863725534878	0.968027060780886	2.01643109365725	1.22054579778819	0.637665400673687	1.52315264533432	0.283785256787332	0.78716305584274
Merged-chr11-53774261-4	chr11	53774172	53774372	+	855.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159393, intron 6 of 9)	intron (NM_001159393, intron 6 of 9)	3799.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131290851-2	chr1	131290751	131290951	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081011, intron 22 of 22)	intron (NM_001081011, intron 22 of 22)	-11288.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	-1.8418762459921	-1.8125357239735	-1.82140854000656	-1.82869693527674	-1.56059678980999	-1.8106129477253	-1.81939992894326	-1.82739231600805	1.3620893379502	0.699511506488145	1
Merged-chr2-91237713-6	chr2	91237657	91237857	+	888.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028119)	promoter-TSS (NM_028119)	611.0	NR_015464	606735.0	Mm.246808	NR_015464	ENSMUSG00000097868	A330069E16Rik	-	RIKEN cDNA A330069E16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-69684456-2	chr1	69684356	69684556	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011770, intron 1 of 7)	intron (NM_011770, intron 1 of 7)	1504.0	NM_011770	22779.0	Mm.106343	NM_011770	ENSMUSG00000025997	Ikzf2	A730095J18Rik|Helios|Zfpn1a2|Znfn1a2	IKAROS family zinc finger 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-18202050-1	chr2	18201950	18202150	+	561.0	f0_balb.idr	intron (NM_010804, intron 16 of 22)	intron (NM_010804, intron 16 of 22)	137465.0	NM_001252561	17354.0	Mm.209175	NM_010804	ENSMUSG00000026743	Mllt10	Af10|B130021D15Rik|D630001B22Rik|mKIAA4140	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-108820760-3	chr8	108820652	108820852	+	990.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007496, intron 3 of 9)	intron (NM_007496, intron 3 of 9)	106108.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-63498472-2	chr4	63498372	63498572	+	625.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2481.0	NM_001008791	73750.0	Mm.300397	NM_028640	ENSMUSG00000039137	Whrn	1110035G07Rik|AW122018|AW742671|C430046P22Rik|Dfnb31|Ush2d|wi	whirlin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-29582600-2	chr2	29582500	29582700	+	813.18335	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37120.0	NM_054050	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165792922-3	chr2	165792822	165793022	+	828.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001252585, exon 19 of 22)	exon (NM_001252585, exon 19 of 22)	65251.0	NM_001252585	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-121641554-4	chr10	121641252	121641452	+	871.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177335)	promoter-TSS (NM_177335)	-349.0	NM_177335	216393.0	Mm.119759	NM_177335	ENSMUSG00000047642	D930020B18Rik	1500017I17Rik	RIKEN cDNA D930020B18 gene	protein-coding	-1.01372586573209	-0.994162335729209	-1.00660846485972	-1.00980964752674	-1.01314284338918	-0.348553270733828	-1.00379093403596	-0.832227498114102	3.00260083539824	0.32495838854254	1
Merged-chr12-108795290-4	chr12	108795153	108795353	+	928.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009537, intron 1 of 4)	intron (NM_009537, intron 1 of 4)	1942.0	NM_009537	22632.0	Mm.3868	NM_009537	ENSMUSG00000021264	Yy1	AW488674|NF-E1	YY1 transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81301876-2	chr10	81301776	81301976	+	602.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001293647, intron 1 of 17)	intron (NM_001293647, intron 1 of 17)	8913.0	NM_001146687	18717.0	Mm.24222	NM_008844	ENSMUSG00000034902	Pip5k1c	AI115456|AI835305|Pip5kIgamma	phosphatidylinositol-4-phosphate 5-kinase, type 1 gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-106151252-4	chr8	106151147	106151347	+	894.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357319, intron 1 of 5)	intron (NM_001357319, intron 1 of 5)	893.0	NM_001357319	192654.0	Mm.284770	NM_133792	ENSMUSG00000031903	Pla2g15	ACS|C87498|LLPL|Lpla2|Lypla3	phospholipase A2, group XV	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-75050180-2	chr9	75050080	75050280	+	911.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357880, intron 2 of 3)	intron (NM_001357880, intron 2 of 3)	12448.0	NM_021548	59046.0	Mm.247837	NM_021548	ENSMUSG00000007656	Arpp19	19kDa|2700024H10Rik|ARPP-19|AW559096|Arpp12	cAMP-regulated phosphoprotein 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-3205133-3	chr17	3205034	3205234	+	959.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	90162.0	NM_134123	106583.0	Mm.124373	NM_134123	ENSMUSG00000046201	Scaf8	A630086M08Rik|A930036P18Rik|AA408306|AI447644|AI448652|AU015035|Rbm16|mKIAA1116	SR-related CTD-associated factor 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-44101067-4	chr17	44100954	44101154	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357997, intron 3 of 3)	intron (NM_001357997, intron 3 of 3)	4754.0	NM_199016	224794.0	Mm.255971	NM_199016	ENSMUSG00000023961	Enpp4	4933413N07Rik|AA986363|AI195364|E-NPP 4|Gm90	ectonucleotide pyrophosphatase/phosphodiesterase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-95858526-4	chr9	95858398	95858598	+	877.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_073361)	promoter-TSS (NR_073361)	-616.0	NM_001271569	73410.0	Mm.443314	NM_028533	ENSMUSG00000096655	1700065D16Rik	-	RIKEN cDNA 1700065D16 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-154006258-4	chr1	154006136	154006336	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC3|LINE|L1	106307.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-43665973-2	chr7	43665873	43666073	+	646.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER4B|LTR|ERVK	-5812.0	NM_031181	83382.0	Mm.157702	NM_031181	ENSMUSG00000030474	Siglece	Cd170|Siglec12|Siglec5|Siglec9|Siglecl1|mSiglec-E	sialic acid binding Ig-like lectin E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117457482-2	chr8	117457382	117457582	+	816.799988	f1_balb.idr|f1_c57bl6.idr	intron (NM_028941, intron 20 of 20)	intron (NM_028941, intron 20 of 20)	-1783.0	NR_106046	102465653.0		NR_106046	ENSMUSG00000098483	Mir7078	Gm27386|mmu-mir-7078	microRNA 7078	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-96082531-4	chr16	96082443	96082643	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_176928)	promoter-TSS (NM_176928)	-115.0	NM_145125	93871.0	Mm.240871	NM_145125	ENSMUSG00000022914	Brwd1	5330419I02Rik|D530019K20Rik|G1-403-16|Wdr9|repro5	bromodomain and WD repeat domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-24227847-4	chr18	24227746	24227946	+	712.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361200, intron 1 of 12)	ORR1B1-int|LTR|ERVL-MaLR	21852.0	NM_001160404	14423.0	Mm.30249	NM_013814	ENSMUSG00000000420	Galnt1	-	polypeptide N-acetylgalactosaminyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-95796396-2	chr15	95796296	95796496	+	802.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 1 of 19)	intron (NM_175344, intron 1 of 19)	5553.0	NM_001253813	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69997337-4	chr11	69997241	69997441	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291127)	promoter-TSS (NM_001291127)	-121.0	NM_001291127	78246.0	Mm.20805	NM_030064	ENSMUSG00000018572	Phf23	JUNE-1	PHD finger protein 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-113565802-4	chr11	113565695	113565895	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166503)	promoter-TSS (NM_001166503)	20.0	NM_001166503	69806.0	Mm.341021	NM_027216	ENSMUSG00000041654	Slc39a11	1810074D23Rik	solute carrier family 39 (metal ion transporter), member 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-44504489-4	chr2	44504393	44504593	+	872.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR23|LTR|ERV1	357129.0	NM_172662	227835.0	Mm.314312	NM_172662	ENSMUSG00000036890	Gtdc1	E330008O22Rik	glycosyltransferase-like domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-69223653-4	chr17	69223553	69223753	+	979.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355736, intron 3 of 21)	intron (NM_001355736, intron 3 of 21)	53553.0	NR_045428	69750.0	Mm.439063	NR_045428	ENSMUSG00000100572	2410021H03Rik	-	RIKEN cDNA 2410021H03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-66909378-4	chr10	66909284	66909484	+	838.825012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11000.0	NR_138560	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-47407445-2	chr19	47407345	47407545	+	681.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008018, intron 2 of 14)	intron (NM_008018, intron 2 of 14)	56966.0	NM_001164717	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-94688664-4	chr15	94688572	94688772	+	999.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178789, intron 2 of 7)	intron (NM_178789, intron 2 of 7)	59487.0	NM_178789	320709.0	Mm.74873	NM_178789	ENSMUSG00000063296	Tmem117	B930062P21Rik	transmembrane protein 117	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-26640043-4	chr14	26639918	26640118	+	744.837524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007479, intron 1 of 5)	intron (NM_007479, intron 1 of 5)	1884.0	NM_007479	11843.0	Mm.297768	NM_007479	ENSMUSG00000021877	Arf4	AA407803	ADP-ribosylation factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-27785410-3	chr15	27785300	27785500	+	802.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081302, intron 34 of 56)	intron (NM_001081302, intron 34 of 56)	-103858.0	NM_001242423	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-104025423-2	chr2	104025323	104025523	+	635.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175161, intron 3 of 4)	intron (NM_175161, intron 3 of 4)	-2376.0	NM_020593	57443.0	Mm.143768	NM_020593	ENSMUSG00000027180	Fbxo3	1200002G09Rik|1700026K02Rik|AI046358|Fba	F-box protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-54173046-2	chr10	54172946	54173146	+	948.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	97124.0	NR_038016	100502920.0	Mm.403982	NR_038016	ENSMUSG00000097069	Gm16998	-	predicted gene, 16998	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180601924-4	chr1	180601811	180602011	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_007415)	TTS (NM_007415)	14710.0	NR_105869	102466761.0		NR_105869	ENSMUSG00000098926	Mir6904	Gm27426|mmu-mir-6904	microRNA 6904	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-52091329-2	chr11	52091229	52091429	+	669.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7495.0	NM_019411	19052.0	Mm.260288	NM_019411	ENSMUSG00000020349	Ppp2ca	PP2A|R75353	protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-96435330-4	chr10	96435215	96435415	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-181686.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-84272470-4	chr7	84272385	84272585	+	976.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007488, intron 12 of 18)	intron (NM_007488, intron 12 of 18)	-120592.0	NM_133722	70178.0	Mm.23914	NM_133722	ENSMUSG00000038459	Abhd17c	2210412D01Rik|AL023007|Fam108c|Fam108c1	abhydrolase domain containing 17C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-54839209-4	chr18	54839066	54839266	+	973.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	151014.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	2.25314683326716	2.37830404567804	2.92867186767909	2.36865935514064	2.38008981917816	2.76817258268786	2.45254643090611	2.59978680182784	0.0951786873124882	0.900038218299415	0.998431161219273
Merged-chr18-5097446-4	chr18	5097332	5097532	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_153153, exon 24 of 35)	exon (NM_153153, exon 24 of 35)	50843.0	NM_001347449	225115.0	Mm.136791	NM_153153	ENSMUSG00000024236	Svil	AU024053|B430302E16Rik	supervillin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-131264372-4	chr6	131264274	131264474	+	924.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17012.0	NM_008462	16633.0	Mm.4783	NM_008462	ENSMUSG00000030187	Klra2	Klra30|Ly49b	killer cell lectin-like receptor, subfamily A, member 2	protein-coding	1.82899345939206	2.17671012436839	1.45157519628927	0.861644430788317	1.20089824292676	1.14728192439656	1.60362735810578	0.864178576730691	-1.49404564750603	0.246911279900058	0.746081649489815
Merged-chr13-5803801-4	chr13	5803704	5803904	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54288.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-119810283-2	chr8	119810183	119810383	+	741.833313	f1_balb.idr|f1_c57bl6.idr	exon (NM_028071, exon 4 of 4)	exon (NM_028071, exon 4 of 4)	30296.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124474653-2	chr6	124474553	124474753	+	773.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11A|LTR|ERVK	-9869.0	NM_153508	232370.0	Mm.193701	NM_153508	ENSMUSG00000008153	Clstn3	CSTN3|Cs3|Cst-3|alc-beta	calsyntenin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-153413554-4	chr1	153413441	153413641	+	869.408325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033736, intron 1 of 3)	intron (NR_033736, intron 1 of 3)	692.0	NR_033736	626058.0	Mm.31556	NM_001177359		E330020D12Rik	EG626058|F430003O07Rik|Gm6648	Riken cDNA E330020D12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-136505968-4	chr4	136505868	136506068	+	945.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024452, intron 1 of 4)	MTC|LTR|ERVL-MaLR	36207.0	NM_024452	269593.0	Mm.485824	NM_024452	ENSMUSG00000001089	Luzp1	2700072H04Rik|AI266952|Luzp|mFLJ00226	leucine zipper protein 1	protein-coding	-1.17367364971587	-1.14665061133654	-1.15856004380685	-1.16834280623128	-1.17310571790619	-1.14406978763884	-0.42938571406771	-1.16659169643457	2.89727187181404	0.396361616615464	1
Merged-chr12-80113818-3	chr12	80113709	80113909	+	925.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007564)	promoter-TSS (NM_007564)	-796.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-123016582-4	chr4	123016487	123016687	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025873)	promoter-TSS (NM_025873)	-6.0	NM_025873	66966.0	Mm.235030	NM_025873	ENSMUSG00000028653	Trit1	2310075G14Rik|AI314189|AI314635|AV099619|IPPT|IPT|MOD5	tRNA isopentenyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-67378768-1	chr2	67378668	67378868	+	601.5	f0_balb.idr	Intergenic	Intergenic	-67234.0	NM_001083919	241431.0	Mm.261043	NM_001024618	ENSMUSG00000027022	Xirp2	2310003D02Rik|2310008C07Rik|A530024P18Rik|AI452089|Cmya3|Gm352|Xin2	xin actin-binding repeat containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122483742-2	chr8	122483642	122483842	+	641.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_153775)	TTS (NM_153775)	7599.0	NR_152823	66965.0	Mm.482288	NM_153775	ENSMUSG00000049482	Ctu2	2310061F22Rik|C16orf84|Ncs2	cytosolic thiouridylase subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-118472710-4	chr1	118472628	118472828	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359330, intron 8 of 39)	intron (NM_001359330, intron 8 of 39)	-13463.0	NR_027901	68204.0	Mm.443536	NR_027901	ENSMUSG00000107722	2900060B14Rik	-	RIKEN cDNA 2900060B14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-85497094-4	chr9	85497007	85497207	+	969.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-169957.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	1.55629295438915	1.61515935285156	1.81858162105532	0.966239497103048	1.30483219617444	1.00591283057722	2.29807994150713	1.77255737640654	0.53564101862669	0.661125049998734	0.990861719256097
Merged-chr11-49984134-4	chr11	49984049	49984249	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	-41182.0	NM_021540	59044.0	Mm.359004	NM_021540	ENSMUSG00000020376	Rnf130	2510042A13Rik|G1RZFP|G1rp|GOLIATH|GP	ring finger protein 130	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-63384544-2	chr10	63384444	63384644	+	640.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253685, intron 1 of 4)	B1_Mus1|SINE|Alu	-2019.0	NM_013888	30045.0	Mm.32550	NM_013888	ENSMUSG00000036764	Dnajc12	Jdp1|mJDP1	DnaJ heat shock protein family (Hsp40) member C12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-34193346-4	chr19	34193200	34193400	+	896.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001360717, exon 1 of 12)	5' UTR (NM_001360717, exon 1 of 12)	366.0	NM_001360718	76630.0	Mm.130952	NM_029682	ENSMUSG00000024776	Stambpl1	1700095N21Rik|8230401J17Rik|ALMalpha|AMSH-FP	STAM binding protein like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-17726402-2	chr10	17726302	17726502	+	893.833374	f1_balb.idr|f1_c57bl6.idr	TTS (NM_010828)	TTS (NM_010828)	3174.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-35765942-2	chr16	35765841	35766041	+	812.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_153550, intron 1 of 8)	B4A|SINE|B4	3415.0	NM_153550	224132.0	Mm.24094	NM_153550	ENSMUSG00000022848	Dirc2	RCC4	disrupted in renal carcinoma 2 (human)	protein-coding	1.45899803449836	0.942136592204604	1.58881063918652	1.5412307810799	1.35656028160866	0.945597883701037	2.00344867136424	1.42497114785475	0.313474251057001	0.803550697235863	0.998431161219273
Merged-chr5-139735400-2	chr5	139735300	139735500	+	699.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_174850, intron 1 of 16)	intron (NM_174850, intron 1 of 16)	933.0	NM_174850	231830.0	Mm.240510	NM_174850	ENSMUSG00000036718	Micall2	A930021H16Rik|JRAB|MICAL-L2|mFLJ00139	MICAL-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-61816156-2	chr2	61816056	61816256	+	708.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	11703.0	NM_009322	21375.0	Mm.308525	NM_009322	ENSMUSG00000035033	Tbr1	-	T-box brain gene 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-134313658-4	chr5	134313564	134313764	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359066, intron 1 of 32)	CpG	1096.0	NM_001359063	14886.0	Mm.261570	NM_010365	ENSMUSG00000060261	Gtf2i	6030441I21Rik|BAP-135|Diws1t|GtfII-I|Spin|TFII-I|WBSCR6	general transcription factor II I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-17723808-3	chr18	17723692	17723892	+	639.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME2|LINE|L1	-142802.0	NR_045374	75162.0	Mm.60874	NR_045374		4930545E07Rik	-	RIKEN cDNA 4930545E07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-92669097-7	chr7	92668963	92669163	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029078, intron 1 of 15)	intron (NM_029078, intron 1 of 15)	849.0	NM_029078	74737.0	Mm.288645	NM_029078	ENSMUSG00000041328	Pcf11	2500001H09Rik|5730417B17Rik|C77803	PCF11 cleavage and polyadenylation factor subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-145116993-2	chr3	145116893	145117093	+	545.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A0|LTR|ERVL-MaLR	-1596.0	NM_001162539	52184.0	Mm.259105	NM_025714	ENSMUSG00000028256	Odf2l	4733401D09Rik|9630045K08Rik|D3Ertd250e	outer dense fiber of sperm tails 2-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-137923868-1	chr1	137923768	137923968	+	543.0	f0_balb.idr	Intergenic	Intergenic	-42587.0	NR_029795	735252.0		NR_029795	ENSMUSG00000065565	Mir181a-1	Mirn181a-1|Mirn213|miR-213|mir-181a-1|mmu-mir-213	microRNA 181a-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-4758136-4	chr5	4758038	4758238	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021457)	promoter-TSS (NM_021457)	78.0	NM_021457	14362.0	Mm.246003	NM_021457	ENSMUSG00000044674	Fzd1	AW227548|FZ-1|Fz1	frizzled class receptor 1	protein-coding	5.13469423583971	4.92461867262325	5.73277462521781	5.34034119375687	4.0310532030464	3.940894917581	2.19622717549848	3.48979804984189	-2.17557981681797	9.13686933606036e-07	6.01036279154426e-05
Merged-chr11-103103675-2	chr11	103103599	103103799	+	762.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025988, intron 3 of 10)	intron (NM_025988, intron 3 of 10)	2011.0	NM_025988	67131.0	Mm.390367	NM_025988	ENSMUSG00000056938	Acbd4	2010009P05Rik|2010015A21Rik|AI849317	acyl-Coenzyme A binding domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-87645856-2	chr1	87645756	87645956	+	657.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110192, intron 2 of 26)	intron (NM_001110192, intron 2 of 26)	25544.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-63815868-4	chr4	63815776	63815976	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M5|LINE|L1	45408.0	NM_009403	21949.0	Mm.4664	NM_009403	ENSMUSG00000028362	Tnfsf8	CD153|CD30LG|Cd30l|Tnlg3a	tumor necrosis factor (ligand) superfamily, member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-77419510-2	chr17	77419410	77419610	+	617.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17B2|LTR|ERVK	-780738.0	NM_015800	50766.0	Mm.311912	NM_015800	ENSMUSG00000024074	Crim1	AU015004	cysteine rich transmembrane BMP regulator 1 (chordin like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-95798849-3	chr15	95798769	95798969	+	796.266663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 1 of 19)	intron (NM_175344, intron 1 of 19)	8026.0	NM_001253813	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-94162243-2	chr11	94162143	94162343	+	955.083374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49211.0	NM_009427	22057.0	Mm.259673	NM_009427	ENSMUSG00000037573	Tob1	Tob|Trob	transducer of ErbB-2.1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-35693289-3	chr11	35693184	35693384	+	918.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011412, intron 32 of 35)	intron (NM_011412, intron 32 of 35)	-76211.0	NM_145962	211347.0	Mm.255044	NM_145962	ENSMUSG00000018846	Pank3	-	pantothenate kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-106486196-5	chr3	106486090	106486290	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033207)	promoter-TSS (NR_033207)	150.0	NM_028110	72121.0	Mm.14816	NM_028110	ENSMUSG00000027901	Dennd2d	2010308M01Rik|AI451421	DENN/MADD domain containing 2D	protein-coding	1.64876004155959	1.06936522619945	0.863701108257567	0.65522017645665	1.284201872954	1.23139841932444	0.869879864895955	0.656780224765303	-0.380684633242327	0.796480258867418	0.998431161219273
Merged-chr15-102467359-2	chr15	102467265	102467465	+	643.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3267.0	NM_011042	18521.0	Mm.236513	NM_011042	ENSMUSG00000056851	Pcbp2	AW412548|Hnrpx|alphaCP-2	poly(rC) binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-9073433-2	chr15	9073333	9073533	+	697.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001040395, intron 1 of 12)	intron (NM_001040395, intron 1 of 12)	2173.0	NM_001040395	68646.0	Mm.244226	NM_001040395	ENSMUSG00000022253	Nadk2	MNADK|Nadkd1	NAD kinase 2, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119378221-2	chr11	119378121	119378321	+	602.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_178743, intron 15 of 16)	ORR1A2|LTR|ERVL-MaLR	-12251.0	NR_035453	100316690.0		NR_035453	ENSMUSG00000088015	Mir1932	mir-1932|mmu-mir-1932	microRNA 1932	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-45329706-4	chr14	45329607	45329807	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025959)	promoter-TSS (NM_025959)	-117.0	NM_025959	67089.0	Mm.18472	NM_025959	ENSMUSG00000021832	Psmc6	2300001E01Rik|AI451058	proteasome (prosome, macropain) 26S subunit, ATPase, 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53429982-3	chr4	53429885	53430085	+	772.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10428.0	NM_001159633	100434.0	Mm.482207	NM_133891	ENSMUSG00000028412	Slc44a1	2210409B22Rik|4833416H08Rik|AW547365|CHTL1|CTL1|Cdw92	solute carrier family 44, member 1	protein-coding	2.19146276265215	2.80164408572404	3.63040130538469	3.46824060629856	3.44742445533014	3.29621054019362	2.85912324470917	3.41613898803964	0.220615377634609	0.732870435443185	0.998431161219273
Merged-chr19-36919700-4	chr19	36919573	36919773	+	940.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028263)	promoter-TSS (NM_028263)	-74.0	NM_028263	72514.0	Mm.41674	NM_028263	ENSMUSG00000047632	Fgfbp3	2610306H15Rik|Fgf-bp3	fibroblast growth factor binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-67425852-4	chr7	67425761	67425961	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53003.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	6.05509191770465	5.60893406001774	6.38295015279139	6.54210369225401	5.91741080467395	7.01049300784809	6.33943415503097	5.42188085623475	0.102024566270558	0.740153372453855	0.998431161219273
Merged-chr4-56864930-2	chr4	56864830	56865030	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_018761, intron 1 of 18)	CpG	281.0	NM_018761	54366.0	Mm.218891	NM_018761	ENSMUSG00000038816	Ctnnal1	ACRP|AI616177|AW545119|C86009|Catnal1	catenin (cadherin associated protein), alpha-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-60983826-4	chr8	60983727	60983927	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007711)	promoter-TSS (NM_007711)	-516.0	NM_173874	12725.0	Mm.25263	NM_007711	ENSMUSG00000004319	Clcn3	Clc3	chloride channel, voltage-sensitive 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-23307243-2	chr11	23307143	23307343	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001190401, intron 1 of 79)	CpG-1781	348.0	NM_001190401	17847.0	Mm.119155	NM_001190401	ENSMUSG00000056342	Usp34	A530081C03Rik|Murr2	ubiquitin specific peptidase 34	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139353647-2	chr5	139353547	139353747	+	617.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001160265, intron 1 of 8)	intron (NM_001160265, intron 1 of 8)	1030.0	NM_001160265	545817.0	Mm.482474	NM_001160265	ENSMUSG00000029541	Cyp2w1	Gm455	cytochrome P450, family 2, subfamily w, polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-30625648-2	chr13	30625548	30625748	+	736.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	10605.0	NR_045975	75090.0	Mm.292232	NR_045975	ENSMUSG00000086263	4930519D14Rik	-	RIKEN cDNA 4930519D14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-39449444-4	chr7	39449368	39449568	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001243021)	promoter-TSS (NM_001243021)	-50.0	NM_001243021	233147.0	Mm.148946	NM_001243021	ENSMUSG00000030424	Zfp939	9430025M13Rik	zinc finger protein 939	protein-coding	6.85684349395767	6.95886809363988	7.62387152548486	6.79679462803034	6.49928593727419	6.70553345967924	6.84965862244987	7.04872024472689	-0.327505284260335	0.125657656695608	0.555641485884731
Merged-chr14-45005929-4	chr14	45005839	45006039	+	974.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17828.0	NM_008964	19217.0	Mm.4630	NM_008964	ENSMUSG00000037759	Ptger2	EP2|Ptgerep2	prostaglandin E receptor 2 (subtype EP2)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-29238244-2	chr17	29238144	29238344	+	644.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153166)	promoter-TSS (NM_153166)	-454.0	NM_001360239	240058.0	Mm.39905	NM_153166	ENSMUSG00000024008	Cpne5	A830083G22Rik	copine V	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-17181583-2	chr19	17181483	17181683	+	615.224976	f1_balb.idr|f1_c57bl6.idr	intron (NM_181348, intron 11 of 19)	ORR1B2|LTR|ERVL-MaLR	157922.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-67951780-4	chr7	67951654	67951854	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010513)	promoter-TSS (NM_010513)	-503.0	NM_010513	16001.0	Mm.275742	NM_010513	ENSMUSG00000005533	Igf1r	A330103N21Rik|CD221|D930020L01|IGF-1R|hyft	insulin-like growth factor I receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-10343890-2	chr17	10343790	10343990	+	654.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19288.0	NR_045461	76634.0	Mm.491052	NR_045461	ENSMUSG00000099384	1700110C19Rik	-	RIKEN cDNA 1700110C19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69836771-2	chr11	69836672	69836872	+	687.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1753.0	NM_026982	69186.0	Mm.248772	NM_026982	ENSMUSG00000070394	Tmem256	1810027O10Rik|3110009M16Rik	transmembrane protein 256	protein-coding	2.18776025675805	1.18610722094232	1.99698305430976	1.82269947599183	2.20646815328334	1.19103408628152	1.88966827924843	1.95012348039215	0.0306079664355026	0.977879185873546	0.998431161219273
Merged-chr19-55658761-4	chr19	55658651	55658851	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045318, intron 2 of 3)	intron (NR_045318, intron 2 of 3)	43453.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	5.47573898582742	4.62874044555892	5.44023444982226	5.84830464249238	6.07200056370922	6.46264621324259	5.75151129830001	6.31992246896553	0.836607319374124	0.00344762338924547	0.0501591577495964
Merged-chr5-137883529-3	chr5	137883441	137883641	+	961.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11783.0	NM_001024932	545812.0	Mm.332769	NM_001024932	ENSMUSG00000066682	Pilrb2	EG545812	paired immunoglobin-like type 2 receptor beta 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-41432501-4	chr13	41432402	41432602	+	998.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111324, intron 1 of 7)	intron (NM_001111324, intron 1 of 7)	54858.0	NM_001111324	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-45551235-2	chr14	45551135	45551335	+	671.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045809, intron 3 of 6)	intron (NR_045809, intron 3 of 6)	7525.0	NR_045809	67651.0	Mm.55930	NR_045809	ENSMUSG00000115324	4930527F14Rik	-	RIKEN cDNA 4930527F14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-75592877-4	chr16	75592791	75592991	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198302)	promoter-TSS (NM_198302)	0.0	NM_198302	224344.0	Mm.273214	NM_198302	ENSMUSG00000032940	Rbm11	A330018F01	RNA binding motif protein 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-109822649-4	chr13	109822539	109822739	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011056, intron 7 of 16)	intron (NM_011056, intron 7 of 16)	-81170.0	NR_035442	100316683.0		NR_035442	ENSMUSG00000084651	Mir1904	Mirn1904|mmu-mir-1904	microRNA 1904	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-145855869-4	chr6	145855763	145855963	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9557.0	NM_024469	79362.0	Mm.154529	NM_024469	ENSMUSG00000030256	Bhlhe41	6430520M22Rik|Bhlhb2l|Bhlhb3|DEC2|Sharp1	basic helix-loop-helix family, member e41	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-9641164-4	chr4	9641055	9641255	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290367, intron 1 of 22)	intron (NM_001290367, intron 1 of 22)	2562.0	NM_001177853	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-93951196-2	chr10	93951096	93951296	+	571.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR106_Mam|LTR|LTR	12667.0	NR_029764	723908.0		NR_029764	ENSMUSG00000065607	Mir331	Mirn331|mmu-mir-331	microRNA 331	ncRNA	1.52127491628646	1.57591981226536	1.96470823215875	1.33828034374754	1.53395430673278	1.84873812085608	0.992449267069184	1.17759754673749	-0.640071770855325	0.587861731938077	0.968220700072259
Merged-chr10-78028253-4	chr10	78028118	78028318	+	869.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14069.0	NM_001081695	54427.0	Mm.13433	NM_019448	ENSMUSG00000000730	Dnmt3l	D6Ertd14e|ecat7	DNA (cytosine-5-)-methyltransferase 3-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-86301410-4	chr17	86301334	86301534	+	804.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011104, intron 1 of 14)	intron (NM_011104, intron 1 of 14)	-14256.0	NR_045435	72104.0	Mm.443401	NR_045435	ENSMUSG00000100738	2010106C02Rik	-	RIKEN cDNA 2010106C02 gene	ncRNA	1.75256605030698	2.68808248616117	2.25513527379814	1.12115916533312	1.99123112445292	1.99095959051193	1.6012537701452	1.36017337153179	-0.851257095323328	0.424493976107649	0.901293602726532
Merged-chr10-117397348-4	chr10	117397227	117397427	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11B|LTR|ERVK	-20354.0	NM_001310609	432508.0	Mm.478881	NM_001013391	ENSMUSG00000055531	Cpsf6	4733401N12Rik|AI256641|CFIM|CFIM68|HPBRII-4|HPBRII-7	cleavage and polyadenylation specific factor 6	protein-coding	2.50298415240759	2.81167664131229	3.0014109865141	2.63953930355467	3.39279820601172	2.0748833586271	2.73796457505896	1.73388156073219	-0.151443727375228	0.849609462373477	0.998431161219273
Merged-chr3-59079482-1	chr3	59079382	59079582	+	570.0	f0_balb.idr	intron (NM_177855, intron 10 of 43)	intron (NM_177855, intron 10 of 43)	22339.0	NM_173398	229323.0	Mm.123648	NM_173398	ENSMUSG00000050075	Gpr171	A630006E05|F730001G15Rik|H963	G protein-coupled receptor 171	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166190005-3	chr2	166189877	166190077	+	957.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME1|LINE|L1	-34294.0	NM_028072	72043.0	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-4309059-2	chr18	4308959	4309159	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	43894.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-20311054-2	chr10	20310954	20311154	+	889.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-1415.0	NM_001025392	72567.0	Mm.294783	NM_153787	ENSMUSG00000037608	Bclaf1	2610102K23Rik|2700025J07Rik|2810454G14Rik|5730534O06Rik|AI450190|AW556225|Btf|mKIAA0164	BCL2-associated transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-17589426-2	chr6	17589315	17589515	+	835.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47595.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	1.91377491467374	2.78868406640046	2.22704428603303	1.84203752099869	1.92931393590457	2.99211597460831	2.61509857117172	2.80509136967253	0.84766158733256	0.308056589133795	0.809002544088853
Merged-chr16-22008835-2	chr16	22008735	22008935	+	873.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357424)	promoter-TSS (NM_001357424)	-649.0	NM_029457	75826.0	Mm.297431	NM_029457	ENSMUSG00000022855	Senp2	2310007L05Rik|4930538C18Rik|AI646780|AW554757|Smt3ip2|SuPr-1|mKIAA1331	SUMO/sentrin specific peptidase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-49120176-4	chr9	49120065	49120265	+	842.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17386.0	NM_030709	80893.0	Mm.72799	NM_030709	ENSMUSG00000032268	Tmprss5	spinesin	transmembrane protease, serine 5 (spinesin)	protein-coding	0.00720325830884855	-0.418961923520245	-0.120248800028184	-0.424968547325859	-0.0754789368537887	-0.418192950454723	-0.421612774977877	-0.424513837624914	-1.06140600571653	0.683277466257509	1
Merged-chr6-115361115-4	chr6	115361044	115361244	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001308352)	promoter-TSS (NM_001308352)	0.0	NM_001308352	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-106230153-4	chr9	106230032	106230232	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7534.0	NM_031178	81897.0	Mm.44889	NM_031178	ENSMUSG00000045322	Tlr9	-	toll-like receptor 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-125102923-4	chr4	125102837	125103037	+	857.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001290701, exon 5 of 7)	exon (NM_001290701, exon 5 of 7)	17803.0	NR_151472	70088.0	Mm.291214	NM_027310	ENSMUSG00000028863	Meaf6	2310005N01Rik|2810036M01Rik	MYST/Esa1-associated factor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-107595743-2	chr7	107595643	107595843	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008905, intron 1 of 24)	intron (NM_008905, intron 1 of 24)	692.0	NM_008905	19024.0	Mm.2817	NM_008905	ENSMUSG00000036528	Ppfibp2	Cclp1	PTPRF interacting protein, binding protein 2 (liprin beta 2)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-99386937-3	chr4	99386837	99387037	+	742.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	192790.0	NM_001145967	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-92861627-3	chr13	92861511	92861711	+	975.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16824.0	NM_001162945	382793.0	Mm.296770	NM_001162945	ENSMUSG00000021704	Mtx3	4930470O13Rik|AA409304|AI853833|AU067765|EG624619|Gm1194|Gm6514	metaxin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-85235562-2	chr11	85235462	85235662	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025825)	promoter-TSS (NM_025825)	396.0	NR_028329	654810.0	Mm.209580	NR_028329	ENSMUSG00000085628	Appbp2os	D630032N06Rik	amyloid beta precursor protein (cytoplasmic tail) binding protein 2, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-16629842-4	chr11	16629717	16629917	+	895.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-121333.0	NM_001109971	20335.0	Mm.325350	NM_011343	ENSMUSG00000078974	Sec61g	-	SEC61, gamma subunit	protein-coding	-1.27019771385087	-1.24210814412887	-1.25266437872947	-1.26133558413341	-1.26974192642364	-1.07372280185361	-1.25027467860197	-0.824525533001554	2.50806194279963	0.447256732080241	1
Merged-chr7-43919995-4	chr7	43919914	43920114	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13757.0	NM_174865	317652.0	Mm.389896	NM_174865	ENSMUSG00000055193	Klk15	-	kallikrein related-peptidase 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-118420611-2	chr13	118420513	118420713	+	1000.0	f0_c57.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-33361.0	NM_021556	59054.0	Mm.143810	NM_021556	ENSMUSG00000021731	Mrps30	2610020A16Rik|AA968347|PAP|Pdcd9	mitochondrial ribosomal protein S30	protein-coding	5.80234719363664	6.09375561143008	5.85497781589555	5.09668430004479	3.25934700669586	4.53855490256492	4.38887211327483	3.4575942816661	-2.09760822913515	5.36675025907703e-08	5.24920676155485e-06
Merged-chr18-56453080-2	chr18	56452980	56453180	+	609.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026240, intron 1 of 13)	intron (NM_026240, intron 1 of 13)	20948.0	NM_026240	107022.0	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|Gramd2b|NS3TP2	GRAM domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-84918674-3	chr11	84918565	84918765	+	885.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2299.0	NM_001005223	448850.0	Mm.379733	NM_001005223	ENSMUSG00000020526	Znhit3	Myohd1|TRIP-3|Trip3	zinc finger, HIT type 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-8589225-2	chr11	8589125	8589325	+	945.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 3 of 30)	intron (NM_001083587, intron 3 of 30)	75310.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-108700205-3	chr12	108700036	108700236	+	826.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027299, intron 1 of 2)	intron (NM_027299, intron 1 of 2)	2170.0	NM_001171002	70059.0	Mm.207605	NM_027299	ENSMUSG00000021263	Degs2	2210008A03Rik|AI852933|DES2	delta(4)-desaturase, sphingolipid 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-56351881-2	chr13	56351781	56351981	+	686.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11019.0	NR_046061	100038494.0	Mm.370447	NR_046061	ENSMUSG00000074885	Gm10782	-	predicted gene 10782	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139378053-4	chr5	139377963	139378163	+	967.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033147, exon 1 of 1)	non-coding (NR_033147, exon 1 of 1)	366.0	NR_033147	80290.0	Mm.270003	NM_030258	ENSMUSG00000044197	Gpr146	BC003323|D830046C22Rik|PGR8	G protein-coupled receptor 146	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-14570222-2	chr17	14570122	14570322	+	684.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	124040.0	NM_011581	21826.0	Mm.26688	NM_011581	ENSMUSG00000023885	Thbs2	TSP2|Thbs-2	thrombospondin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-16161585-2	chr4	16161485	16161685	+	928.666626	f1_balb.idr|f1_c57bl6.idr	intron (NR_138102, intron 1 of 11)	intron (NR_138102, intron 1 of 11)	2058.0	NM_138952	192656.0	Mm.112765	NM_138952	ENSMUSG00000041135	Ripk2	2210420D18Rik|CARD3|CARDIAK|CCK|D4Bwg0615e|RICK|RIP2	receptor (TNFRSF)-interacting serine-threonine kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6502863-2	chr19	6502763	6502963	+	592.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205234, intron 17 of 22)	intron (NM_001205234, intron 17 of 22)	40207.0	NM_009203	20521.0	Mm.391146	NM_009203	ENSMUSG00000061742	Slc22a12	AI987855|OAT4L|Rst|Slc22al2|URAT1	solute carrier family 22 (organic anion/cation transporter), member 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-57850042-3	chr1	57849938	57850138	+	981.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164566, intron 1 of 11)	intron (NM_001164566, intron 1 of 11)	4467.0	NM_001164566	67198.0	Mm.159989	NM_144882	ENSMUSG00000038305	Spats2l	2810022L02Rik|A230104H11Rik|AA987173|AI480531|AI842453|AW413586	spermatogenesis associated, serine-rich 2-like	protein-coding	3.8520797561055	3.07676647057145	3.90261782928907	2.99814265274834	4.76195260450884	4.72125099845206	5.03944663933134	4.90626733201657	1.74816384272433	4.66637435760286e-05	0.00165139545515189
Merged-chr10-50895348-1	chr10	50895248	50895448	+	862.0	f0_balb.idr	promoter-TSS (NM_011376)	promoter-TSS (NM_011376)	-303.0	NM_011376	20464.0	Mm.4774	NM_011376	ENSMUSG00000019913	Sim1	bHLHe14|mSIM1	single-minded family bHLH transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-5014729-2	chr16	5014629	5014829	+	678.583374	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001079814, exon 16 of 16)	3' UTR (NM_001079814, exon 16 of 16)	-1176.0	NM_133185	66049.0	Mm.27792	NM_133185	ENSMUSG00000022540	Rogdi	0610011C19Rik|AU020118|C76152|Lzf	rogdi homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117578027-2	chr8	117577927	117578127	+	687.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172285, intron 10 of 32)	intron (NM_172285, intron 10 of 32)	79752.0	NM_172285	234779.0	Mm.192699	NM_172285	ENSMUSG00000034330	Plcg2	PLC-gamma-2|PLCgamma2|Plcg-2	phospholipase C, gamma 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-159190584-2	chr3	159190484	159190684	+	730.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_040750, intron 2 of 4)	L1Md_F2|LINE|L1	114220.0	NR_040750	624759.0	Mm.491054	NR_040750	ENSMUSG00000106053	Gm20752	-	predicted gene, 20752	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-129180530-4	chr6	129180427	129180627	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053109)	promoter-TSS (NM_053109)	-88.0	NM_053109	93694.0	Mm.197536	NM_053109	ENSMUSG00000030157	Clec2d	Clr-b|Clrb|Ocil	C-type lectin domain family 2, member d	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19324732-2	chr7	19324632	19324832	+	808.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14687.0	NM_001347586	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-80143298-2	chr11	80143198	80143398	+	719.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-1145.0	NM_183275	68550.0	Mm.18466	NM_183275	ENSMUSG00000046909	Tefm	1110002N22Rik	transcription elongation factor, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44353150-2	chr7	44353050	44353250	+	735.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_001034115, exon 24 of 25)	exon (NM_001034115, exon 24 of 25)	21880.0	NM_027049	69349.0	Mm.358922	NM_027049	ENSMUSG00000008028	1700008O03Rik	-	RIKEN cDNA 1700008O03 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-98662333-4	chr2	98662233	98662433	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GSAT_MM|Satellite|Satellite	1194676.0	NM_178725	241568.0	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-55442262-3	chr3	55442146	55442346	+	698.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357475, intron 4 of 16)	intron (NM_001357475, intron 4 of 16)	-19482.0	NM_001195539	13175.0	Mm.393242	NM_019978	ENSMUSG00000027797	Dclk1	1700113D08Rik|2810480F11Rik|AI836758|Click-I|Cpg16|Dcamkl1|Dcl|Dclk|mKIAA0369	doublecortin-like kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-8864665-4	chr12	8864566	8864766	+	979.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56641.0	NM_008640	17775.0	Mm.30071	NM_008640	ENSMUSG00000020585	Laptm4a	AA286466|LAPTM4|MTP|Mtrp|mKIAA0108	lysosomal-associated protein transmembrane 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-93962703-1	chr11	93962603	93962803	+	578.0	f1_balb.idr	intron (NM_008704, intron 3 of 4)	intron (NM_008704, intron 3 of 4)	5818.0	NM_008704	18102.0	Mm.439702	NM_008704	ENSMUSG00000037601	Nme1	AL024257|NDPK-A|NM23-M1|NM23A	NME/NM23 nucleoside diphosphate kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31232545-2	chr14	31232445	31232645	+	630.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14672.0	NM_001025379	218877.0	Mm.27812	NM_001025379	ENSMUSG00000021904	Sema3g	AK129018	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3G	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-151841081-2	chr4	151840981	151841181	+	742.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081557, intron 1 of 23)	Tigger15a|DNA|TcMar-Tigger	20687.0	NM_001081557	100072.0	Mm.318846	NM_001081557	ENSMUSG00000014592	Camta1	1810059M14Rik|2310058O09Rik|AI316882|AW987475|mKIAA0833	calmodulin binding transcription activator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-57541614-4	chr8	57541499	57541699	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167981, intron 6 of 11)	intron (NM_001167981, intron 6 of 11)	29756.0	NM_008252	97165.0	Mm.276881	NM_008252	ENSMUSG00000054717	Hmgb2	C80539|HMG-2|Hmg2	high mobility group box 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59760309-4	chr15	59760208	59760408	+	872.2666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34651.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-145037167-4	chr4	145037070	145037270	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276465, intron 65 of 69)	intron (NM_001276465, intron 65 of 69)	144033.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-39224730-2	chr2	39224630	39224830	+	642.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_024209, intron 1 of 6)	B3|SINE|B2	1619.0	NM_024209	67857.0	Mm.389242	NM_024209	ENSMUSG00000026753	Ppp6c	2310003C10Rik|Pp6C	protein phosphatase 6, catalytic subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-12651001-4	chr13	12650896	12651096	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_003568)	promoter-TSS (NR_003568)	-601.0	NR_003568	664862.0	Mm.415635	NR_003568		Gpr137b-ps	2310041G17Rik	G protein-coupled receptor 137B, pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128645793-2	chr10	128645693	128645893	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_152728)	promoter-TSS (NR_152728)	-91.0	NR_152728	102633634.0	Mm.406455	NR_152728		Gm26876	-	predicted gene, 26876	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-110720139-2	chr8	110720039	110720239	+	615.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_151674, exon 19 of 19)	non-coding (NR_151674, exon 19 of 19)	-1337.0	NM_198625	244654.0	Mm.490385	NM_198625	ENSMUSG00000033763	Mtss1l	ABBA	metastasis suppressor 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-33311883-1	chr12	33311783	33311983	+	634.0	f0_balb.idr	intron (NM_001033436, intron 1 of 7)	intron (NM_001033436, intron 1 of 7)	9368.0	NM_001033436	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-125311232-1	chr5	125311132	125311332	+	829.0	f1_c57bl6.idr	intron (NM_001205083, intron 1 of 10)	intron (NM_001205083, intron 1 of 10)	29862.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53122043-4	chr4	53121966	53122166	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 5 of 49)	intron (NM_013454, intron 5 of 49)	37829.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-108766228-2	chr8	108766156	108766356	+	556.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007496, intron 1 of 9)	intron (NM_007496, intron 1 of 9)	51612.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-51673662-1	chr15	51673562	51673762	+	581.0	f0_balb.idr	Intergenic	Intergenic	191799.0	NM_080635	68135.0	Mm.289800	NM_080635	ENSMUSG00000022312	Eif3h	1110008A16Rik|40kD|9430017H16Rik|EIF3-P40|EIF3-gamma|Eif3s3	eukaryotic translation initiation factor 3, subunit H	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152914952-2	chr1	152914852	152915052	+	842.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12306.0	NM_001005507	226517.0	Mm.270775	NM_001005507	ENSMUSG00000042772	Smg7	9430023P16Rik|mKIAA0250	Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-66816558-1	chr1	66816458	66816658	+	1000.0	f0_c57.idr	intron (NM_001357156, intron 1 of 14)	CpG	1037.0	NM_177645	68691.0	Mm.240912	NM_177645	ENSMUSG00000026004	Kansl1l	1110028C15Rik|1190030G24|AI427598|C430010P07Rik|mKIAA4189	KAT8 regulatory NSL complex subunit 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-25634588-4	chr14	25634490	25634690	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 6 of 23)	intron (NM_183208, intron 6 of 23)	31077.0	NM_001309430	100188919.0	Mm.473810	NM_001309430		Gm45915	Israa	predicted gene, 45915	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-68879287-4	chr2	68879171	68879371	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347161, intron 1 of 10)	MTEa|LTR|ERVL-MaLR	17830.0	NM_001347161	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-14013065-4	chr14	14012997	14013197	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_139227, exon 2 of 12)	exon (NM_139227, exon 2 of 12)	606.0	NM_139227	246103.0	Mm.133625	NM_139227	ENSMUSG00000021738	Atxn7	A430107N12Rik|AI627028|Sca7|ataxin-7	ataxin 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-34444560-1	chr18	34444460	34444660	+	543.0	f1_balb.idr	intron (NM_146084, intron 19 of 20)	B3|SINE|B2	35137.0	NM_016927	53871.0	Mm.445792	NM_016927	ENSMUSG00000014503	Pkd2l2	TRPP5	polycystic kidney disease 2-like 2	protein-coding	-0.114729966761291	-0.495995186701762	-0.500288253408933	-0.503607522593699	-0.508308777609017	-0.495028873849818	0.308031443556289	-0.503027206757302	1.39236649799336	0.611914747192908	1
Merged-chr7-59229195-4	chr7	59229144	59229344	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_173010, exon 1 of 9)	5' UTR (NM_173010, exon 1 of 9)	494.0	NM_173010	22215.0	Mm.9002	NM_011668	ENSMUSG00000025326	Ube3a	4732496B02|5830462N02Rik|A130086L21Rik|Hpve6a	ubiquitin protein ligase E3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115158162-3	chr11	115158040	115158240	+	736.700012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021411, intron 3 of 8)	intron (NM_021411, intron 3 of 8)	3962.0	NM_021411	58222.0	Mm.143789	NM_021411	ENSMUSG00000020732	Rab37	B230331O03Rik|B230354I04Rik	RAB37, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-94488549-3	chr16	94488447	94488647	+	997.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38082.0	NM_007834	13185.0	Mm.7472	NM_007834	ENSMUSG00000022898	Dscr3	AW538125|Dcra	DSCR3 arrestin fold containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-20694675-4	chr16	20694580	20694780	+	926.033325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133778)	promoter-TSS (NM_133778)	-377.0	NM_133778	78408.0	Mm.196512	NM_133778	ENSMUSG00000050821	Fam131a	2900046G09Rik	family with sequence similarity 131, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27917530-2	chr17	27917431	27917631	+	583.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_181413, intron 1 of 24)	intron (NM_181413, intron 1 of 24)	8225.0	NM_181413	224650.0	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	-0.595776955477212	-0.204396068989882	-0.587120719044514	-0.590367622110127	-0.594970747066901	0.192417417376283	-0.586194102415081	-0.589799774158049	1.48401937123868	0.596759986826361	1
Merged-chr11-83225628-2	chr11	83225528	83225728	+	651.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_015519, exon 4 of 4)	non-coding (NR_015519, exon 4 of 4)	2052.0	NR_015519	100043636.0	Mm.295569	NR_015519	ENSMUSG00000087107	AI662270	AW496474	expressed sequence AI662270	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25756252-4	chr7	25756149	25756349	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001190974)	TTS (NM_001190974)	-1490.0	NM_178089	232989.0	Mm.254223	NM_144922	ENSMUSG00000040725	Hnrnpul1	E130317O14Rik|E1B-AP5|E1BAP5|Hnrnpul|Hnrpul1	heterogeneous nuclear ribonucleoprotein U-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-77630549-3	chr11	77630453	77630653	+	817.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22738.0	NM_144825	216965.0	Mm.340436	NM_144825	ENSMUSG00000017291	Taok1	2810468K05Rik|AU020252|D130018F14Rik|Map3k16|Markk|Psk2|mKIAA1361	TAO kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-77897370-3	chr14	77897268	77897468	+	997.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	-6871.0	NM_178825	108670.0	Mm.68134	NM_029495	ENSMUSG00000022014	Epsti1	2310046K10Rik|5033415K03Rik|BRESI1	epithelial stromal interaction 1 (breast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4304906-1	chr19	4304806	4305006	+	947.0	f1_c57bl6.idr	intron (NM_001290818, intron 1 of 20)	intron (NM_001290818, intron 1 of 20)	1316.0	NM_130863	110355.0	Mm.254144	NM_130863	ENSMUSG00000024858	Grk2	Adrbk-1|Adrbk1|Bark-1|beta ARK|betaARK1	G protein-coupled receptor kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-108552306-2	chr3	108552206	108552406	+	586.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	2096.0	NR_028538	100217438.0		NR_028538		Scarna2	MBII-382	small Cajal body-specific RNA 2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80140980-2	chr7	80140912	80141112	+	722.516663	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25662.0	NM_173011	269951.0	Mm.246432	NM_173011	ENSMUSG00000030541	Idh2	E430004F23|IDPm|Idh-2	isocitrate dehydrogenase 2 (NADP+), mitochondrial	protein-coding	0.0486568758430289	-0.394237142573557	0.151234726995573	-0.400924101727326	-0.40501872822666	-0.39338328747831	-0.397184433067144	-0.240201659888937	-2.59325492491967	0.306652494948045	1
Merged-chr13-110597673-3	chr13	110597586	110597786	+	964.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	202642.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-76951630-4	chr5	76951536	76951736	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172146)	promoter-TSS (NM_172146)	-58.0	NM_172146	231327.0	Mm.202337	NM_172146	ENSMUSG00000029246	Ppat	5730454C12Rik|AA408689|AA675351|AI507113|C79945	phosphoribosyl pyrophosphate amidotransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-75298071-1	chr9	75297971	75298171	+	616.0	f1_c57bl6.idr	intron (NM_001081322, intron 38 of 40)	intron (NM_001081322, intron 38 of 40)	-8217.0	NM_010313	14697.0	Mm.17604	NM_010313	ENSMUSG00000032192	Gnb5	GBS|Gbeta5|flr	guanine nucleotide binding protein (G protein), beta 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-103814193-2	chr14	103814093	103814293	+	572.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_007904)	TTS (NM_007904)	29508.0	NM_007904	13618.0	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-88390696-6	chr4	88390595	88390795	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081184, intron 35 of 43)	intron (NM_001081184, intron 35 of 43)	48231.0	NM_025760	66775.0	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-54237193-4	chr11	54237065	54237265	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12734.0	NM_009969	12981.0	Mm.4922	NM_009969	ENSMUSG00000018916	Csf2	CSF|Csfgm|GMCSF|Gm-CSf|MGI-IGM	colony stimulating factor 2 (granulocyte-macrophage)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-6559664-2	chr2	6559564	6559764	+	724.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110231, intron 13 of 15)	intron (NM_001110231, intron 13 of 15)	161998.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-11322917-4	chr16	11322831	11323031	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028964)	promoter-TSS (NM_028964)	27.0	NM_028964	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140162753-1	chr5	140162653	140162853	+	552.0	f0_balb.idr	intron (NR_152617, intron 11 of 16)	ORR1E|LTR|ERVL-MaLR	12165.0	NM_001359027	17120.0	Mm.27250	NM_010752	ENSMUSG00000029554	Mad1l1	AI173502|AW550425|Mad1	MAD1 mitotic arrest deficient 1-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-46557191-3	chr4	46557162	46557362	+	904.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164804, intron 2 of 11)	PB1D7|SINE|Alu	9178.0	NM_178893	107684.0	Mm.416311	NM_178893	ENSMUSG00000028337	Coro2a	9030208C03Rik|AI563590|IR10	coronin, actin binding protein 2A	protein-coding	0.761277611110842	1.30603321417168	0.819272837675299	0.611728353367431	1.03188577447545	0.633686040104107	1.56558365006549	1.094546344706	1.01734004310008	0.493923494568409	0.935679785535167
Merged-chr5-136136869-2	chr5	136136769	136136969	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027891)	promoter-TSS (NM_027891)	534.0	NM_001359416	72041.0	Mm.294725	NM_028070	ENSMUSG00000039754	Alkbh4	2010004B12Rik|Abj4	alkB homolog 4, lysine demethylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-130563739-4	chr2	130563655	130563855	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040348)	promoter-TSS (NR_040348)	-2.0	NM_207207	99045.0	Mm.30057	NM_207207	ENSMUSG00000037740	Mrps26	AI648866|GI008|MRP-S13|MRP-S26|Rpms13	mitochondrial ribosomal protein S26	protein-coding	6.65276766722128	6.54685633210218	6.7341217666639	6.60613413437991	6.39179502678732	6.51673509692823	6.00000110510711	6.52768404941499	-0.281997826796891	0.156989272725322	0.613403374128879
Merged-chr7-80861615-2	chr7	80861515	80861715	+	807.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009553)	promoter-TSS (NM_009553)	-493.0	NM_009553	22691.0	Mm.358645	NM_009553	ENSMUSG00000038797	Zscan2	Zfp-29|Zfp29	zinc finger and SCAN domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116282437-3	chr11	116282344	116282544	+	867.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010254, intron 1 of 1)	intron (NM_010254, intron 1 of 1)	1505.0	NM_010254	14428.0	Mm.57149	NM_010254	ENSMUSG00000020793	Galr2	mGalR	galanin receptor 2	protein-coding	3.24887540490111	1.96322973824975	1.65382184962328	3.78995116122053	2.56514062169984	3.00130819642132	1.66795943200715	2.03579233391707	-1.00134261399848	0.257830253960933	0.757455285754963
Merged-chr13-58453799-3	chr13	58453716	58453916	+	743.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50473.0	NM_001301341	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45899012-2	chr7	45898912	45899112	+	717.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144801, intron 2 of 7)	intron (NM_144801, intron 2 of 7)	1943.0	NM_144801	70209.0	Mm.163766	NM_144801	ENSMUSG00000002781	Tmem143	2310076O21Rik|AI481604	transmembrane protein 143	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117826958-3	chr11	117826836	117827036	+	848.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009387)	promoter-TSS (NM_009387)	-922.0	NM_009387	21877.0	Mm.2661	NM_009387	ENSMUSG00000025574	Tk1	D530002A18Rik|Tk-1|Tk1a|Tk1b	thymidine kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-120754853-4	chr7	120754770	120754970	+	993.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177697, intron 3 of 33)	B1_Mus2|SINE|Alu	15313.0	NM_177697	233813.0	Mm.389939	NM_177697	ENSMUSG00000030889	Vwa3a	E030013G06Rik	von Willebrand factor A domain containing 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-70998292-2	chr17	70998192	70998392	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357820)	promoter-TSS (NM_001357820)	-280.0	NM_001357820	67268.0	Mm.489605	NM_026064	ENSMUSG00000024048	Myl12a	2900073G15Rik|AI838292|C80200	myosin, light chain 12A, regulatory, non-sarcomeric	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-108516863-2	chr7	108516763	108516963	+	569.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	7085.0	NM_146739	258734.0	Mm.377664	NM_146739	ENSMUSG00000058014	Olfr502	MOR204-8	olfactory receptor 502	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-113308501-4	chr6	113308402	113308602	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001282128, intron 1 of 13)	intron (NM_001282128, intron 1 of 13)	1365.0	NM_001282126	78783.0	Mm.356059	NM_030178	ENSMUSG00000001632	Brpf1	4833438B11Rik|4930540D11Rik|Brpf2	bromodomain and PHD finger containing, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-130915574-4	chr4	130915481	130915681	+	740.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010686, intron 1 of 7)	intron (NM_010686, intron 1 of 7)	2247.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115660565-2	chr11	115660465	115660665	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001313936, intron 2 of 5)	intron (NM_001313936, intron 2 of 5)	-32270.0	NM_001252395	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-45526670-2	chr4	45526570	45526770	+	598.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033306, intron 1 of 5)	Lx8|LINE|L1	4158.0	NM_001033306	230126.0	Mm.251716	NM_001033306	ENSMUSG00000044813	Shb	BC028832	src homology 2 domain-containing transforming protein B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-47441732-4	chr19	47441623	47441823	+	885.1333619999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008018, intron 1 of 14)	intron (NM_008018, intron 1 of 14)	22688.0	NM_001164717	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	4.37042848850643	4.56285391776575	4.36437638544118	4.49831917803294	5.12750030533936	3.89564991189738	4.08173479907236	4.94482758214934	0.229516895413112	0.577768872722164	0.96585843058813
Merged-chr1-74239619-5	chr1	74239620	74239820	+	914.7200320000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357387, intron 2 of 10)	MER3|DNA|hAT-Charlie	3203.0	NM_029711	76709.0	Mm.337038	NM_029711	ENSMUSG00000006304	Arpc2	2210023N03Rik|34kDa|p34-Arc	actin related protein 2/3 complex, subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81552799-2	chr10	81552734	81552934	+	886.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6610.0	NR_074087	14797.0	Mm.180013	NM_010347	ENSMUSG00000054452	Aes	AL024115|Esp1|Grg|Grg-5|Grg5|Tle5	amino-terminal enhancer of split	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81233111-4	chr10	81232979	81233179	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001034895)	promoter-TSS (NM_001034895)	-84.0	NM_001034895	103406.0	Mm.158783	NM_001034895	ENSMUSG00000034949	Zfr2	2010013I23Rik|9130206N08Rik|AW045600|mKIAA1086	zinc finger RNA binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141445513-4	chr4	141445412	141445612	+	829.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009541, intron 1 of 15)	intron (NM_009541, intron 1 of 15)	839.0	NM_009541	22642.0	Mm.389590	NM_009541	ENSMUSG00000006215	Zbtb17	AA589413|Lp-1|Miz1|Zfp100|mZ13	zinc finger and BTB domain containing 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-78340441-2	chr9	78340341	78340541	+	941.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008182, intron 2 of 6)	intron (NM_008182, intron 2 of 6)	6704.0	NM_008182	14858.0	Mm.422778	NM_008182	ENSMUSG00000057933	Gsta2	Gst2-2|Gstc-2|Gstc2	glutathione S-transferase, alpha 2 (Yc2)	protein-coding	3.12597707635736	3.50892598715036	3.90296796452385	3.20416155970116	3.38833625628386	3.53438053799641	4.09869628353417	3.22089307624302	0.205861493494973	0.707209295966187	0.998431161219273
Merged-chr9-53692136-4	chr9	53692046	53692246	+	756.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175562, intron 1 of 1)	B2_Mm1a|SINE|B2	14086.0	NM_175562	270160.0	Mm.290285	NM_175562	ENSMUSG00000055069	Rab39	C230094F14Rik|Rab39a	RAB39, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-132776629-1	chr7	132776529	132776729	+	710.799988	f0_balb.idr	intron (NM_212473, intron 2 of 4)	intron (NM_212473, intron 2 of 4)	287.0	NM_001347630	77938.0	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133545488-1	chr4	133545388	133545588	+	862.0	f0_balb.idr	intron (NM_010948, intron 1 of 7)	intron (NM_010948, intron 1 of 7)	539.0	NM_010948	18221.0	Mm.69	NM_010948	ENSMUSG00000028851	Nudc	SIG-92|Silg92	nudC nuclear distribution protein	protein-coding	1.72424727007105	1.42507440939668	1.66077204225316	0.97945718797926	1.73939380756387	1.73496357689886	1.79137266315551	0.98176613430813	0.410834429232038	0.739222936260116	0.998431161219273
Merged-chr8-122277957-2	chr8	122277866	122278066	+	575.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4175.0	NM_009569	22761.0	Mm.3105	NM_009569	ENSMUSG00000049577	Zfpm1	FOG|Fog1	zinc finger protein, multitype 1	protein-coding	-1.52696403314699	-1.49523967873556	-1.5048333853602	-1.51271394162622	-1.52473704212565	-1.49316068248889	-1.50266158046844	-1.06847079017215	2.01069003169785	0.564432837776867	1
Merged-chr18-66471341-8	chr18	66471209	66471409	+	938.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	12705.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-113632557-2	chr5	113632457	113632657	+	666.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008153, intron 1 of 2)	MLTR18D_MM|LTR|ERVK	11046.0	NM_001359060	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-115036527-3	chr7	115036431	115036631	+	767.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	85257.0	NR_040319	101786.0	Mm.395157	NR_040317	ENSMUSG00000108379	A730082K24Rik	AU044236	RIKEN cDNA A730082K24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21924719-2	chr9	21924619	21924819	+	793.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045606, intron 3 of 4)	B1_Mus1|SINE|Alu	2569.0	NM_001253869	235043.0	Mm.253329	NM_178577	ENSMUSG00000040883	Tmem205	-	transmembrane protein 205	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-65358472-4	chr14	65358367	65358567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199029)	promoter-TSS (NM_199029)	-209.0	NM_199029	380912.0	Mm.270087	NM_199029	ENSMUSG00000034522	Zfp395	BC053701|Gm910	zinc finger protein 395	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75619884-2	chr11	75619784	75619984	+	619.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008850, intron 9 of 11)	intron (NM_008850, intron 9 of 11)	-11136.0	NM_008916	19062.0	Mm.1458	NM_008916	ENSMUSG00000006127	Inpp5k	C62|Pps|SKIP	inositol polyphosphate 5-phosphatase K	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-27979313-4	chr7	27979125	27979325	+	977.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081021)	promoter-TSS (NM_001081021)	-68.0	NM_001081021	338354.0	Mm.389873	NM_001081021	ENSMUSG00000063047	Zfp780b	B230208L21Rik	zinc finger protein 780B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-115678374-4	chr8	115678277	115678477	+	993.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	28517.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-43381990-2	chr16	43381890	43382090	+	839.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_181058, intron 2 of 6)	intron (NM_181058, intron 2 of 6)	38206.0	NR_046026	626693.0	Mm.447083	NR_046026	ENSMUSG00000085499	Gm15713	-	predicted gene 15713	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167293509-4	chr2	167293430	167293630	+	966.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52993.0	NM_008968	19223.0	Mm.2339	NM_008968	ENSMUSG00000017969	Ptgis	Cyp8|Cyp8a1|Pgis	prostaglandin I2 (prostacyclin) synthase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-33954468-1	chr17	33954368	33954568	+	1000.0	f1_balb.idr	intron (NM_011296, intron 2 of 4)	intron (NM_011296, intron 2 of 4)	1173.0	NM_011296	20084.0	Mm.298745	NM_011296	ENSMUSG00000008668	Rps18	H-2Ke3|H2-Ke3|Ke-3|ke3	ribosomal protein S18	protein-coding	1.83410618340646	2.22337093319381	1.02918555002882	1.00363992125074	2.60872337024201	1.59837366627319	1.03629707088031	2.92606349593429	1.47624316647189	0.216936589688406	0.707538695710375
Merged-chr2-34774245-15	chr2	34774006	34774206	+	943.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_022310, exon 5 of 8)	exon (NM_022310, exon 5 of 8)	2016.0	NM_022310	14828.0	Mm.330160	NM_022310	ENSMUSG00000026864	Hspa5	AL022860|AU019543|Bip|D2Wsu141e|D2Wsu17e|Grp78|Hsce70|SEZ-7|Sez7|baffled|mBiP	heat shock protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-58510707-2	chr16	58510607	58510807	+	748.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357433, intron 1 of 10)	RLTR20A4|LTR|ERVK	12719.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-50556407-2	chr9	50556307	50556507	+	744.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_025687)	TTS (NM_025687)	-1269.0	NM_133217	170752.0	Mm.390149	NM_133217	ENSMUSG00000032066	Bco2	B-diox-II|Bcdo2|Bcmo2|CMO2	beta-carotene oxygenase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-17389306-1	chr17	17389206	17389406	+	819.0	f1_c57bl6.idr	intron (NM_025934, intron 8 of 9)	RSINE1|SINE|B4	-13380.0	NM_025681	66643.0	Mm.268018	NM_025681	ENSMUSG00000047786	Lix1	5730466L18Rik	limb and CNS expressed 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-30843222-3	chr3	30843116	30843316	+	696.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	-12734.0	NM_001134386	71862.0	Mm.272019	NM_027965	ENSMUSG00000037661	Gpr160	1700025D19Rik|GPCR150	G protein-coupled receptor 160	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-8873793-3	chr10	8873690	8873890	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 1 of 19)	L2|LINE|L2	12280.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-35281012-2	chr9	35280985	35281185	+	794.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040715)	promoter-TSS (NR_040715)	-20.0	NR_040715	71133.0	Mm.158577	NR_040715	ENSMUSG00000111746	4933422A05Rik	-	RIKEN cDNA 4933422A05 gene	ncRNA	0.526762345811024	0.563950628500713	0.0531025115998879	0.0484364449280061	0.0418244194857548	0.0604932317495075	0.0544345357474179	0.791770716477542	-0.202448731636908	0.926680844219959	1
Merged-chr5-144282674-2	chr5	144282574	144282774	+	786.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025833, intron 7 of 13)	intron (NM_025833, intron 7 of 13)	5613.0	NR_040432	100504231.0	Mm.441035	NR_040432	ENSMUSG00000086894	Gm15708	-	predicted gene 15708	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-51754387-2	chr19	51754287	51754487	+	815.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3_Mus|LINE|L1	-509910.0	NM_008386	16333.0	Mm.46269	NM_008386	ENSMUSG00000035804	Ins1	Ins-1|Ins2-rs1	insulin I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-76046518-2	chr8	76046418	76046618	+	590.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4B|LINE|L1	597824.0	NM_001164235	71831.0	Mm.443238	NM_027944	ENSMUSG00000031620	Iqcm	1700007B14Rik	IQ motif containing M	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-116473381-2	chr10	116473281	116473481	+	746.799988	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_130644, exon 1 of 3)	non-coding (NR_130644, exon 1 of 3)	142.0	NM_021452	58802.0	Mm.440652	NM_021452	ENSMUSG00000054934	Kcnmb4	1700058G18Rik|2900045G12Rik	potassium large conductance calcium-activated channel, subfamily M, beta member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-22123766-3	chr16	22123620	22123820	+	804.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183029, intron 2 of 15)	intron (NM_183029, intron 2 of 15)	39579.0	NM_183029	319765.0	Mm.489442	NM_183029	ENSMUSG00000033581	Igf2bp2	C330012H03Rik|IMP-2|Imp2|Neilsen	insulin-like growth factor 2 mRNA binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-62278274-2	chr11	62278174	62278374	+	800.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_027198, intron 1 of 4)	B3|SINE|B2	3121.0	NM_027198	69747.0	Mm.141150	NM_027198	ENSMUSG00000014243	Zswim7	2410012H22Rik	zinc finger SWIM-type containing 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-112255462-2	chr5	112255362	112255562	+	652.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023695)	promoter-TSS (NM_023695)	-358.0	NM_001312895	12960.0	Mm.29488	NM_023695	ENSMUSG00000029343	Crybb1	3110006K12Rik|BB1CRY	crystallin, beta B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118799341-2	chr9	118799241	118799441	+	745.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 3 of 13)	intron (NM_001113514, intron 3 of 13)	87649.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-10251957-4	chr13	10251864	10252064	+	984.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033269, intron 1 of 4)	L1MC1|LINE|L1	108839.0	NM_033269	12671.0	Mm.342315	NM_033269	ENSMUSG00000046159	Chrm3	Chrm-3|M3|M3R	cholinergic receptor, muscarinic 3, cardiac	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-24020420-4	chr18	24020330	24020530	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357447)	promoter-TSS (NM_001357447)	-60.0	NM_001357447	59057.0	Mm.417427	NM_021559	ENSMUSG00000051469	Zfp24	3526401F17Rik|5033419P20Rik|AI480505|AI642085|AL024422|KOX17|ZF-12|Zfp191|Znf24	zinc finger protein 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-96654931-4	chr15	96654818	96655018	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-12005.0	NM_001166458	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132073525-2	chr4	132073425	132073625	+	697.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001128607, intron 1 of 17)	intron (NM_001128607, intron 1 of 17)	-1428.0	NM_183428	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47590616-2	chr17	47590516	47590716	+	706.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081635, intron 2 of 6)	(TC)n|Simple_repeat|Simple_repeat	-2851.0	NM_007632	12445.0	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-86817307-2	chr18	86817207	86817407	+	555.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	104996.0	NM_001361145	12405.0	Mm.70775	NM_172633	ENSMUSG00000024647	Cbln2	6330593N19Rik|A730004O05	cerebellin 2 precursor protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-33336105-2	chr5	33336005	33336205	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021500, intron 1 of 8)	CpG	533.0	NM_021500	59003.0	Mm.138617	NM_021500	ENSMUSG00000079562	Maea	1110030D19Rik|EMP|Gid9	macrophage erythroblast attacher	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-172343941-2	chr1	172343841	172344041	+	586.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039484, intron 1 of 1)	intron (NM_001039484, intron 1 of 1)	2731.0	NM_001039484	16513.0	Mm.254563	NM_020269	ENSMUSG00000044708	Kcnj10	BIR10|BIRK-1|Kir1.2|Kir4.1	potassium inwardly-rectifying channel, subfamily J, member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-34198902-4	chr19	34198845	34199045	+	760.625	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360718, intron 1 of 10)	intron (NM_001360718, intron 1 of 10)	6011.0	NM_001360718	76630.0	Mm.130952	NM_029682	ENSMUSG00000024776	Stambpl1	1700095N21Rik|8230401J17Rik|ALMalpha|AMSH-FP	STAM binding protein like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-87035962-4	chr1	87035861	87036061	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001172157, intron 15 of 21)	intron (NM_001172157, intron 15 of 21)	53967.0	NM_007433	11650.0	Mm.195224	NM_007433	ENSMUSG00000026246	Alppl2	Akp5|C77216|D1Ertd816e|EAP	alkaline phosphatase, placental-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-67041063-2	chr6	67040963	67041163	+	636.833313	f1_balb.idr|f1_c57bl6.idr	intron (NR_040278, intron 1 of 6)	intron (NR_040278, intron 1 of 6)	-3656.0	NM_007836	13197.0	Mm.72235	NM_007836	ENSMUSG00000036390	Gadd45a	AA545191|Ddit1|GADD45	growth arrest and DNA-damage-inducible 45 alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165901673-2	chr2	165901573	165901773	+	696.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-16835.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-99100918-4	chr4	99100800	99101000	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026082, intron 1 of 47)	intron (NM_026082, intron 1 of 47)	20015.0	NM_001290636	67299.0	Mm.260623	NM_026082	ENSMUSG00000028556	Dock7	3110056M06Rik|Gm430	dedicator of cytokinesis 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36343622-2	chr18	36343522	36343722	+	790.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5002.0	NM_001081365	66060.0	Mm.272527	NM_001081365	ENSMUSG00000046727	Cystm1	0610010O12Rik	cysteine-rich transmembrane module containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-97001835-3	chr5	97001695	97001895	+	661.311096	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080708, intron 1 of 15)	intron (NM_080708, intron 1 of 15)	4106.0	NM_080708	140780.0	Mm.281490	NM_080708	ENSMUSG00000034663	Bmp2k	4933417M22Rik|AA673486|AV128808|BIKE	BMP2 inducible kinase	protein-coding	-1.7024385483431	-1.81249224917775	-1.82134771053534	-1.82862185015837	-1.70038292649591	-1.81057323376012	-1.81934302819017	-1.82731978264371	0.0376840119903864	0.991491645451152	1
Merged-chr6-113039801-1	chr6	113039701	113039901	+	782.0	f0_balb.idr	Intergenic	RLTR1B|LTR|ERV1	-6501.0	NM_001355266	14911.0	Mm.781	NM_008188	ENSMUSG00000030264	Thumpd3	AW556087|Gt(ROSA)26asSor|Gtrosa26as	THUMP domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-120752468-2	chr1	120752368	120752568	+	588.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	149981.0	NM_010133	13798.0	Mm.2657	NM_010133	ENSMUSG00000058665	En1	En-1|Mo-en.1|engrailed-1	engrailed 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-44427515-4	chr15	44427425	44427625	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175009)	promoter-TSS (NM_175009)	-586.0	NM_175009	223527.0	Mm.291828	NM_175009	ENSMUSG00000022338	Eny2	1810057B09Rik|6720481I12|DC6|Ey2	ENY2 transcription and export complex 2 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171002585-2	chr1	171002485	171002685	+	758.799988	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR21|LTR|ERVK	-16341.0	NM_144559	246256.0	Mm.251254	NM_144559	ENSMUSG00000059089	Fcgr4	4833442P21Rik|CD16-2|FcgRIV|FcgammaRIV|Fcgr3a|Fcrl3	Fc receptor, IgG, low affinity IV	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-52444128-4	chr3	52444038	52444238	+	971.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72826.0	NR_153344	102631981.0	Mm.394225	NR_153344		Gm30173	-	predicted gene, 30173	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-15914474-2	chr7	15914374	15914574	+	616.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7897.0	NM_009156	20364.0	Mm.42829	NM_009156	ENSMUSG00000041571	Selenow	Sepw1|selW	selenoprotein W	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-73949774-4	chr17	73949655	73949855	+	900.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011723, intron 1 of 35)	intron (NM_011723, intron 1 of 35)	441.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-74806755-2	chr1	74806655	74806855	+	887.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14736.0	NM_009518	22409.0	Mm.5130	NM_009518	ENSMUSG00000026167	Wnt10a	-	wingless-type MMTV integration site family, member 10A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-6334987-4	chr15	6334871	6335071	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001008702, intron 1 of 13)	intron (NM_001008702, intron 1 of 13)	35182.0	NM_001008702	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70432491-4	chr11	70432372	70432572	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271360)	promoter-TSS (NM_001271360)	-108.0	NM_001271360	216869.0	Mm.203747	NM_145429	ENSMUSG00000060216	Arrb2	AI326910|AW122872|Arr3	arrestin, beta 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-181232821-4	chr1	181232720	181232920	+	981.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20842.0	NM_145514	226757.0	Mm.289082	NM_145514	ENSMUSG00000038733	Wdr26	1600024A01Rik|AA693241|AI447817|AU044014|C77982|Gid7	WD repeat domain 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-22417673-4	chr17	22417479	22417679	+	845.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6623.0	NM_001331197	74149.0	Mm.30767	NM_198003	ENSMUSG00000071266	Zfp946	1300003B13Rik	zinc finger protein 946	protein-coding	-0.868200281806746	-0.996496491336938	-1.00853288953665	-0.368821712930239	-1.01475329110817	-0.993888153636026	-1.00580811281457	-1.01127002736351	-2.90325356872352	0.34781365862981	1
Merged-chr7-102223791-6	chr7	102223665	102223865	+	739.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_111938, intron 2 of 4)	PB1D10|SINE|Alu	737.0	NR_111937	233575.0	Mm.302013	NM_145583	ENSMUSG00000030990	Pgap2	1810006G21Rik|C76649|Frag1	post-GPI attachment to proteins 2	protein-coding	0.500813137031461	0.253046737402288	0.246573309014708	0.241575886712393	0.806372461574601	0.876481335590927	0.711527451886061	0.242449130170936	2.72487394381994	0.169459602386022	1
Merged-chr3-144828069-2	chr3	144827969	144828169	+	853.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_139148, exon 10 of 14)	exon (NM_139148, exon 10 of 14)	-8575.0	NM_030601	80797.0	Mm.20897	NM_030601	ENSMUSG00000028262	Clca3a2	Clca2	chloride channel accessory 3A2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141016987-4	chr7	141016909	141017109	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033632)	promoter-TSS (NM_001033632)	-117.0	NM_001033632	213002.0	Mm.276440	NM_001033632	ENSMUSG00000059108	Ifitm6	A330075D07|Dspa2f|Fgls5|fragilis5	interferon induced transmembrane protein 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-112239721-4	chr2	112239628	112239828	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207206)	promoter-TSS (NM_207206)	-113.0	NM_207206	99010.0	Mm.33438	NM_207206	ENSMUSG00000027134	Lpcat4	AI505034|Agpat7|Aytl3|LPEAT2	lysophosphatidylcholine acyltransferase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34080543-1	chr17	34080443	34080643	+	662.0	f1_c57bl6.idr	Intergenic	Intergenic	-11836.0	NM_008206	15001.0	Mm.116	NM_008206	ENSMUSG00000024334	H2-Oa	H-2Oa	histocompatibility 2, O region alpha locus	protein-coding	1.40710690032646	2.62350011262869	0.433979659954156	0.415671802544364	1.30770554523468	0.461625920774935	0.43908009490536	0.418924298732316	-2.66418031208468	0.395595618919592	0.883207338257772
Merged-chr3-107119092-1	chr3	107118992	107119192	+	677.0	f1_balb.idr	Intergenic	Intergenic	17525.0	NM_008417	16490.0	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70442096-4	chr11	70441980	70442180	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3825.0	NR_106064	102465670.0		NR_106064	ENSMUSG00000099109	Mir7115	Gm27902|mmu-mir-7115	microRNA 7115	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-144280178-1	chr2	144280078	144280278	+	669.5	f0_balb.idr	3' UTR (NM_001289630, exon 5 of 5)	3' UTR (NM_001289630, exon 5 of 5)	9274.0	NM_001355688	74528.0	Mm.386817	NM_028984	ENSMUSG00000027424	Mgme1	8430406I07Rik|AI426476	mitochondrial genome maintenance exonuclease 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-58399878-2	chr7	58399778	58399978	+	794.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-258324.0	NM_009728	11982.0	Mm.135129	NM_009728	ENSMUSG00000025324	Atp10a	Atp10c|pfatp	ATPase, class V, type 10A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-54808361-4	chr11	54808246	54808446	+	951.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-11573.0	NR_040284	432562.0	Mm.406948	NR_040284	ENSMUSG00000086789	Lyrm7os	Gm12228	LYR motif containing 7, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67760829-3	chr10	67760716	67760916	+	728.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	151846.0	NM_178679	216049.0	Mm.268346	NM_178679	ENSMUSG00000037855	Zfp365	AI839779|AV340892|DBZ|Su48|Znf365|talanin	zinc finger protein 365	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-92225486-4	chr1	92225402	92225602	+	836.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45161.0	NM_207225	208727.0	Mm.318567	NM_207225	ENSMUSG00000026313	Hdac4	4932408F19Rik|HD4	histone deacetylase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-35755961-3	chr2	35755859	35756059	+	939.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029774, intron 9 of 9)	intron (NM_029774, intron 9 of 9)	59227.0	NM_001290639	69601.0	Mm.29629	NM_001001602	ENSMUSG00000026883	Dab2ip	2310011D08Rik|AI480459|Aip1|mKIAA1743	disabled 2 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118662048-2	chr9	118661948	118662148	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 7 of 27)	ORR1E|LTR|ERVL-MaLR	-49644.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-76894310-3	chr11	76894224	76894424	+	891.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10221.0	NM_025655	66601.0	Mm.25138	NM_025655	ENSMUSG00000020839	Tmigd1	2010002A20Rik|Tmigd	transmembrane and immunoglobulin domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-33175332-4	chr14	33175241	33175441	+	995.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146022, intron 1 of 58)	intron (NM_001146022, intron 1 of 58)	9725.0	NM_001146022	545030.0	Mm.318345	NM_001146022	ENSMUSG00000051506	Wdfy4	Gm18810	WD repeat and FYVE domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-35338619-3	chr2	35338557	35338757	+	824.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1648.0	NM_013515	13830.0	Mm.295284	NM_013515	ENSMUSG00000026880	Stom	Epb7.2	stomatin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133238133-4	chr4	133238086	133238286	+	830.483337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2632.0	NM_016693	53608.0	Mm.36640	NM_016693	ENSMUSG00000028862	Map3k6	Ask2|MAPKKK6|MEKK6	mitogen-activated protein kinase kinase kinase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-9500121-2	chr3	9500021	9500221	+	730.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133218, intron 2 of 8)	MIR3|SINE|MIR	97043.0	NR_015499	320088.0	Mm.212908	NR_015499	ENSMUSG00000097365	C030034L19Rik	A130044O20Rik	RIKEN cDNA C030034L19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-61659195-3	chr11	61659091	61659291	+	866.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027817, intron 1 of 4)	intron (NM_027817, intron 1 of 4)	5870.0	NM_027817	71520.0	Mm.202760	NM_027817	ENSMUSG00000004837	Grap	8430435N19Rik|BB233594	GRB2-related adaptor protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71858474-2	chr8	71858366	71858566	+	577.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-23602.0	NM_145624	236193.0	Mm.290790	NM_145624	ENSMUSG00000056019	Zfp709	BC021921|GIOT-4|HIT-40	zinc finger protein 709	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65565048-4	chr9	65564916	65565116	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153119, intron 2 of 5)	RMER15|LTR|ERVL	15071.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	0.183616767028185	0.235733109004111	1.3029248890119	0.462929627634877	0.187073390707327	0.239333592824508	2.047048290952	0.208614914783035	1.16284074453288	0.723740572411096	0.998431161219273
Merged-chr10-100494586-1	chr10	100494486	100494686	+	540.0	f1_balb.idr	intron (NM_146009, intron 5 of 52)	intron (NM_146009, intron 5 of 52)	6297.0	NM_146009	216274.0	Mm.229114	NM_146009	ENSMUSG00000019971	Cep290	BC004690|Nphp6|b2b1454Clo|b2b1752Clo	centrosomal protein 290	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-87608562-4	chr1	87608460	87608660	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11752.0	NM_001110193	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-15321739-1	chr10	15321639	15321839	+	865.75	f0_balb.idr	Intergenic	Intergenic	-470038.0	NR_131087	77538.0	Mm.128235	NR_131087	ENSMUSG00000112227	C330004P14Rik	-	RIKEN cDNA C330004P14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-113709105-4	chr9	113708986	113709186	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164677)	promoter-TSS (NM_001164677)	-827.0	NM_011052	18571.0	Mm.29816	NM_011052	ENSMUSG00000032504	Pdcd6ip	AI480591|AW544830|Aip1|Alix|C76364|Eig2|mKIAA1375	programmed cell death 6 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-130089931-6	chr5	130089855	130090055	+	929.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001130476, intron 1 of 5)	intron (NM_001130476, intron 1 of 5)	10585.0	NM_001130476	22021.0	Mm.332720	NM_013837	ENSMUSG00000034118	Tpst1	R75054|Tango13a	protein-tyrosine sulfotransferase 1	protein-coding	-0.362181508777167	-0.34997033506232	-0.181267676186306	-0.357068899517391	0.194543282622249	0.140526995563371	-0.353097462400504	-0.35652992188924	2.69730152468885	0.280421032183006	1
Merged-chr5-112283719-4	chr5	112283635	112283835	+	944.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001326590, intron 1 of 5)	intron (NM_001326590, intron 1 of 5)	7044.0	NM_009419	22022.0	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-110385663-4	chr7	110385557	110385757	+	938.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177324, intron 17 of 40)	intron (NM_177324, intron 17 of 40)	163954.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95671923-2	chr3	95671823	95672023	+	750.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	13202.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-100213898-2	chr13	100213798	100213998	+	623.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010870, intron 14 of 14)	intron (NM_010870, intron 14 of 14)	-11776.0	NM_010872	17948.0	Mm.89961	NM_010872	ENSMUSG00000078945	Naip2	Birc1b|Naip-rs6	NLR family, apoptosis inhibitory protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-47952815-2	chr6	47952715	47952915	+	608.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178898)	promoter-TSS (NM_178898)	-575.0	NM_178898	101197.0	Mm.241063	NM_178898	ENSMUSG00000045466	Zfp956	AI894139	zinc finger protein 956	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-20940284-3	chr1	20940189	20940389	+	752.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_028829)	TTS (NM_028829)	-11337.0	NM_027974	71877.0	Mm.29178	NM_027974	ENSMUSG00000041809	Efhc1	1700029F22Rik|mRib72-1|myoclonin1	EF-hand domain (C-terminal) containing 1	protein-coding	2.7616924212162	1.45155640911042	2.35878784750082	2.09609334078228	3.39867872467853	4.47939508415232	3.96483638479654	1.6470608407855	2.37736736743319	0.00352205432201859	0.0508719194489314
Merged-chr2-128693780-2	chr2	128693680	128693880	+	942.5833130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5135.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-100442680-4	chr3	100442594	100442794	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	16289.0	NR_040543	73806.0	Mm.396549	NR_040543	ENSMUSG00000086923	4930406D18Rik	-	RIKEN cDNA 4930406D18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70797847-2	chr8	70797747	70797947	+	649.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_106099)	promoter-TSS (NR_106099)	-288.0	NR_106099	102466823.0		NR_106099	ENSMUSG00000099031	Mir7240	Gm27487|mmu-mir-7240	microRNA 7240	ncRNA	1.61953949992246	0.890690247141877	1.78318960350532	1.72369769352608	1.22563091329551	0.895763251897237	0.872810083993185	2.64812435948114	0.373523883538572	0.777657023665507	0.998431161219273
Merged-chr17-79615276-4	chr17	79615176	79615376	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201361, intron 1 of 10)	CpG	376.0	NM_201361	381110.0	Mm.209801	NM_201361	ENSMUSG00000036368	Rmdn2	AW061290|Fam82a1|RMD-2|mRMD-2	regulator of microtubule dynamics 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-108784969-4	chr6	108784871	108785071	+	948.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026011, intron 1 of 6)	intron (NM_026011, intron 1 of 6)	1912.0	NM_026011	67166.0	Mm.271178	NM_026011	ENSMUSG00000030105	Arl8b	2610313E07Rik|3100002J04Rik|Arl10c|gie1	ADP-ribosylation factor-like 8B	protein-coding	1.41538837690638	1.24058255642918	1.97035807994796	1.72172111907037	1.42643210316036	1.73322571186669	1.54207334308203	0.989490392487945	-0.590423808299497	0.615340896291378	0.977344463026735
Merged-chr1-154181028-2	chr1	154180928	154181128	+	624.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20159.0	NM_001204908	100503355.0	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	Gm10178|Gm203	zinc finger protein 648	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-52802356-1	chr6	52802256	52802456	+	605.0	f0_balb.idr	intron (NM_173406, intron 3 of 4)	intron (NM_173406, intron 3 of 4)	88191.0	NM_001355596	52440.0	Mm.389757	NM_025816	ENSMUSG00000004535	Tax1bp1	1200003J11Rik|1700069J21Rik|AA930106|D6Ertd404e|D6Ertd772e|T6bp|TXBP151	Tax1 (human T cell leukemia virus type I) binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-109026288-2	chr7	109026188	109026388	+	994.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_021885, intron 6 of 11)	intron (NM_021885, intron 6 of 11)	15408.0	NM_021885	22141.0	Mm.439722	NM_021885	ENSMUSG00000031028	Tub	rd5|tub	tubby bipartite transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-30592766-1	chr14	30592666	30592866	+	634.0	f1_c57bl6.idr	Intergenic	RLTR12E|LTR|ERVK	17544.0	NM_001310682	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	0.536442804181796	0.277127541783646	0.269754738024146	1.01290605692393	0.543606514987783	0.278784243734386	0.271384199059079	1.02178856093808	0.0315996091759473	0.986736169842471	1
Merged-chr1-107516089-4	chr1	107515983	107516183	+	798.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011111, intron 2 of 7)	intron (NM_011111, intron 2 of 7)	4573.0	NM_011111	18788.0	Mm.271870	NM_011111	ENSMUSG00000062345	Serpinb2	PAI-2|Planh2|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-167392905-3	chr1	167392808	167393008	+	780.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025569, intron 1 of 5)	intron (NM_025569, intron 1 of 5)	889.0	NM_025569	66447.0	Mm.218286	NM_025569	ENSMUSG00000026688	Mgst3	2010012L10Rik|2010306B17Rik|2700004G04Rik|AA516734|GST-III	microsomal glutathione S-transferase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-120682773-1	chr2	120682673	120682873	+	644.0	f1_c57bl6.idr	Intergenic	Intergenic	48744.0	NM_026891	68968.0	Mm.2289	NM_026891	ENSMUSG00000027284	Cdan1	1500015A01Rik|AI448026|AW492297|CDA-I|CDA1|CDAI	congenital dyserythropoietic anemia, type I (human)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-130266748-2	chr5	130266648	130266848	+	715.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153350, intron 3 of 15)	intron (NR_153350, intron 3 of 15)	9711.0	NM_001015876	100929.0	Mm.271296	NM_178897	ENSMUSG00000056310	Tyw1	AW125391|Rsafd1	tRNA-yW synthesizing protein 1 homolog (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-103302840-4	chr9	103302745	103302945	+	796.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-2482.0	NM_176979	235559.0	Mm.259893	NM_176979	ENSMUSG00000032555	Topbp1	1110031N14Rik|2810429C13Rik|AI256758|D430026L04Rik|mKIAA0259	topoisomerase (DNA) II binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-31087104-3	chr6	31087002	31087202	+	872.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24009.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-64080415-4	chr1	64080280	64080480	+	899.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033563, intron 1 of 3)	intron (NM_033563, intron 1 of 3)	-37879.0	NR_105864	102466760.0		NR_105864	ENSMUSG00000098487	Mir6899	Gm27384|mmu-mir-6899	microRNA 6899	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-128016321-4	chr1	128016223	128016423	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285945, intron 7 of 20)	intron (NM_001285945, intron 7 of 20)	86148.0	NM_027678	226409.0	Mm.425048	NM_027678	ENSMUSG00000036086	Zranb3	4933425L19Rik|AH2|AI316834|C730006D09	zinc finger, RAN-binding domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-39840850-3	chr15	39840749	39840949	+	923.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164466, intron 4 of 9)	intron (NM_001164466, intron 4 of 9)	16621.0	NM_001164466	64705.0	Mm.275974	NM_022722	ENSMUSG00000022304	Dpys	1200017I10Rik|1300004I01Rik|DHP|DHPase	dihydropyrimidinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-111118551-4	chr10	111118457	111118657	+	871.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-46245.0	NM_001003717	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-99194698-4	chr4	99194612	99194812	+	953.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175029, intron 1 of 10)	intron (NM_175029, intron 1 of 10)	565.0	NM_001145967	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	4.73772153570619	5.17643667460428	4.62708266976891	5.44405567213207	5.29531464107757	4.812073717438	4.85144185754618	5.73808856948212	0.235925853865185	0.495054635088175	0.935773371251117
Merged-chr11-72940383-2	chr11	72940283	72940483	+	738.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F2|LTR|ERVL-MaLR	-20786.0	NM_016745	53313.0	Mm.6306	NM_016745	ENSMUSG00000020788	Atp2a3	SERCA3b|Serca3	ATPase, Ca++ transporting, ubiquitous	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34605808-4	chr17	34605719	34605919	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163379)	promoter-TSS (NM_001163379)	-42.0	NM_001163379	55979.0	Mm.8684	NM_018862	ENSMUSG00000034254	Agpat1	1-AGP|1-AGPAT|AW047140	1-acylglycerol-3-phosphate O-acyltransferase 1 (lysophosphatidic acid acyltransferase, alpha)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-29251365-4	chr19	29251270	29251470	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008413)	promoter-TSS (NM_008413)	-433.0	NM_001048177	16452.0	Mm.275839	NM_008413	ENSMUSG00000024789	Jak2	Fd17	Janus kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3792265-2	chr4	3792164	3792364	+	621.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_010747)	TTS (NM_010747)	43391.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-79076107-2	chr15	79076007	79076207	+	555.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145139, intron 2 of 12)	intron (NM_145139, intron 2 of 12)	884.0	NM_145139	223691.0	Mm.206404	NM_145139	ENSMUSG00000033047	Eif3l	0610011H21Rik|D15N1e|Eif3eip|Eif3ip|Eif3s6ip|HSP-66Y|PAF67	eukaryotic translation initiation factor 3, subunit L	protein-coding	-0.816765798264369	-1.05876391675832	-0.623959385783453	-1.07597425974501	-1.07868045510713	-1.05634818858683	-1.06738793285787	-1.07563900291397	-2.67391132290547	0.401893001488495	1
Merged-chr2-152414809-4	chr2	152414698	152414898	+	881.582153	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289738)	promoter-TSS (NM_001289738)	246.0	NM_175126	67917.0	Mm.391810	NM_175126	ENSMUSG00000074682	Zcchc3	2810406K24Rik	zinc finger, CCHC domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-132578214-4	chr2	132578115	132578315	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291052)	promoter-TSS (NM_001291052)	33.0	NM_001291050	74182.0	Mm.211211	NM_027096	ENSMUSG00000027346	Gpcpd1	2310004G06Rik|2310032D16Rik|AU015213|Gde5|Prei4|mKIAA1434	glycerophosphocholine phosphodiesterase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-4717115-2	chr7	4717015	4717215	+	753.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001142792, intron 5 of 5)	intron (NM_001142792, intron 5 of 5)	7967.0	NM_001142792	330460.0	Mm.361851	NM_177887	ENSMUSG00000046456	Tmem150b	A630041N19|Tmem224	transmembrane protein 150B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124320553-2	chr6	124320453	124320653	+	569.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_053094, exon 11 of 17)	exon (NM_053094, exon 11 of 17)	15902.0	NM_053094	93671.0	Mm.37426	NM_053094	ENSMUSG00000008845	Cd163	CD163v2|CD163v3	CD163 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-125651716-2	chr2	125651616	125651816	+	844.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_199022, intron 9 of 11)	intron (NM_199022, intron 9 of 11)	-21384.0	NM_025613	58521.0	Mm.425101	NM_025613	ENSMUSG00000091337	Eid1	2610002K20Rik|Cri1|EID-1|ORF12|PNAS-22|PTD014	EP300 interacting inhibitor of differentiation 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101971259-5	chr7	101971217	101971417	+	918.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133947, intron 1 of 24)	intron (NM_133947, intron 1 of 24)	1474.0	NM_133947	101706.0	Mm.27259	NM_133947	ENSMUSG00000066306	Numa1	6720401E04Rik|AA764025|AL022610|AU014979|NuMA	nuclear mitotic apparatus protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-38246167-3	chr18	38246064	38246264	+	775.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015475, intron 1 of 3)	intron (NR_015475, intron 1 of 3)	4034.0	NR_015475	73516.0	Mm.48776	NR_015475	ENSMUSG00000097080	1700086O06Rik	-	RIKEN cDNA 1700086O06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-86079541-4	chr12	86079449	86079649	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009368)	promoter-TSS (NM_009368)	-508.0	NM_009368	21809.0	Mm.3992	NM_009368	ENSMUSG00000021253	Tgfb3	TGF-beta-3|Tgfb-3	transforming growth factor, beta 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80584227-4	chr7	80584121	80584321	+	855.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49102.0	NM_001042527	12144.0	Mm.12932	NM_007550	ENSMUSG00000030528	Blm	-	Bloom syndrome, RecQ like helicase	protein-coding	0.273284064113309	0.0289909739347234	0.0237341001557636	0.721618864750459	0.484686111810909	0.0301767998964675	0.0248930281146512	0.183134565040546	-0.752415648848998	0.720308164860675	1
Merged-chr1-191351267-4	chr1	191351172	191351372	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_144880)	TTS (NM_144880)	25307.0	NM_025864	66950.0	Mm.236300	NM_025864	ENSMUSG00000026627	Tmem206	2310028N02Rik|AI118576	transmembrane protein 206	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-65184757-2	chr1	65184657	65184857	+	583.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111320, intron 1 of 8)	intron (NM_001111320, intron 1 of 8)	1722.0	NM_001111320	15926.0	Mm.9925	NM_010497	ENSMUSG00000025950	Idh1	AI314845|AI788952|E030024J03Rik|Id-1|Idh-1|Idpc	isocitrate dehydrogenase 1 (NADP+), soluble	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-46454868-4	chr11	46454762	46454962	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134250)	promoter-TSS (NM_134250)	-69.0	NM_134250	171285.0	Mm.72168	NM_134250	ENSMUSG00000020399	Havcr2	TIM-3|Tim3|Timd3	hepatitis A virus cellular receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-88522392-2	chr6	88522292	88522492	+	969.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-3592.0	NM_016906	53421.0	Mm.28375	NM_016906	ENSMUSG00000030082	Sec61a1	AA408394|AA410007|Sec61a	Sec61 alpha 1 subunit (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-108224694-2	chr3	108224594	108224794	+	749.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008596, intron 2 of 5)	intron (NM_008596, intron 2 of 5)	1905.0	NM_008596	17306.0	Mm.316885	NM_008596	ENSMUSG00000027887	Sypl2	AI552439|Mg29	synaptophysin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46932068-4	chr8	46931952	46932152	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13D5|LTR|ERVK	-54835.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116019354-6	chr11	116019221	116019421	+	971.861084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5183.0	NM_008211	15081.0	Mm.18516	NM_008211	ENSMUSG00000016559	H3f3b	9430068D06Rik|H3.3B	H3 histone, family 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-97211319-4	chr7	97211211	97211411	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162477, intron 1 of 9)	intron (NM_001162477, intron 1 of 9)	114653.0	NM_001177412	244144.0	Mm.297541	NM_001177412	ENSMUSG00000035713	Usp35	Gm1088|Gm493	ubiquitin specific peptidase 35	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-137821863-2	chr5	137821763	137821963	+	611.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_153510)	TTS (NM_153510)	14415.0	NM_153510	231805.0	Mm.379385	NM_153510	ENSMUSG00000046245	Pilra	AV021745|FDF03	paired immunoglobin-like type 2 receptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-36735077-2	chr13	36734972	36735172	+	980.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153529)	promoter-TSS (NM_153529)	-595.0	NM_153529	68404.0	Mm.232930	NM_153529	ENSMUSG00000039114	Nrn1	0710008J23Rik|Cpg15|Nrn	neuritin 1	protein-coding	1.17455201980756	0.472540057960254	0.462103035499547	0.453948312692489	0.99822940467907	1.50075158339117	0.464417561386072	0.81116672772926	1.45829792822276	0.400246507874113	0.885176145862419
Merged-chr7-19844758-4	chr7	19844662	19844862	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7241.0	NM_001270489	100502736.0	Mm.445354	NM_001270489	ENSMUSG00000092216	Gm19345	-	predicted gene, 19345	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-163749242-1	chr2	163749142	163749342	+	656.0	f0_balb.idr	intron (NM_001272052, intron 1 of 11)	intron (NM_001272052, intron 1 of 11)	997.0	NM_007398	11486.0	Mm.388	NM_007398	ENSMUSG00000017697	Ada	-	adenosine deaminase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-98296655-4	chr9	98296575	98296775	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001357446, exon 1 of 4)	5' UTR (NM_001357446, exon 1 of 4)	105.0	NM_001357451	74080.0	Mm.294082	NM_144533	ENSMUSG00000032456	Nmnat3	4933408N02Rik|PNAT3	nicotinamide nucleotide adenylyltransferase 3	protein-coding	4.77849858784233	5.3828323681248	5.02596478343968	4.82599924945399	4.81392328245398	5.05560583442916	4.82047347165946	4.39388673180703	-0.278295404611415	0.409464726635763	0.893461151064622
Merged-chr10-8881958-4	chr10	8881898	8882098	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 1 of 19)	intron (NM_175155, intron 1 of 19)	4072.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	5.37326063487838	5.89482385502116	6.53541924128526	5.43627764975873	5.6755753551253	5.71432710893859	6.65396343325197	5.96732705176533	0.191942755694372	0.537959574447187	0.953963493057627
Merged-chr16-4736444-3	chr16	4736348	4736548	+	582.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001136066, intron 1 of 5)	intron (NM_001136066, intron 1 of 5)	-5165.0	NM_010443	15369.0	Mm.272866	NM_010443	ENSMUSG00000004070	Hmox2	HO-2|HO2	heme oxygenase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133681185-2	chr4	133681085	133681285	+	766.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_001080819, exon 20 of 20)	exon (NM_001080819, exon 20 of 20)	-8019.0	NM_001356466	230801.0	Mm.217004	NM_178698	ENSMUSG00000043257	Pigv	B330013B03|D430024F16Rik	phosphatidylinositol glycan anchor biosynthesis, class V	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-115345731-2	chr14	115345631	115345831	+	567.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175500, intron 2 of 7)	RMER5|LTR|ERV1	63821.0	NR_045761	75088.0	Mm.444706	NR_045761	ENSMUSG00000093551	4930505G20Rik	-	RIKEN cDNA 4930505G20 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152626411-2	chr1	152626311	152626511	+	623.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346118, intron 2 of 18)	intron (NM_001346118, intron 2 of 18)	-1194.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-38440879-2	chr18	38440779	38440979	+	958.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355749, intron 1 of 7)	intron (NM_001355749, intron 1 of 7)	21972.0	NM_001355749	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-101845079-2	chr3	101844979	101845179	+	559.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-8856.0	NM_172295	242125.0	Mm.32900	NM_172295	ENSMUSG00000044313	Mab21l3	-	mab-21-like 3 (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-34528315-2	chr19	34528215	34528415	+	699.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021460)	promoter-TSS (NM_021460)	-841.0	NM_021460	16889.0	Mm.157545	NM_021460	ENSMUSG00000024781	Lipa	AA960673|Lal|Lip-1|Lip1	lysosomal acid lipase A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-62839521-3	chr9	62839476	62839676	+	849.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033175, intron 1 of 6)	PB1D9|SINE|Alu	789.0	NM_001033175	76524.0	Mm.283636	NM_001033175	ENSMUSG00000032245	Cln6	1810065L06Rik|AW743417|D9Bwg1455e|nclf	ceroid-lipofuscinosis, neuronal 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122569552-3	chr8	122569527	122569727	+	854.0833130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_026014, intron 3 of 9)	intron (NM_026014, intron 3 of 9)	1612.0	NM_026014	67177.0	Mm.21873	NM_026014	ENSMUSG00000006585	Cdt1	2610318F11Rik|AW545653|C76791|Ris2	chromatin licensing and DNA replication factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-6290288-2	chr11	6290188	6290388	+	967.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1309.0	NM_010956	18293.0	Mm.276348	NM_010956	ENSMUSG00000020456	Ogdh	2210403E04Rik|2210412K19Rik|AA409584|d1401|mKIAA4192	oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-113945385-4	chr5	113945277	113945477	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198109, intron 14 of 14)	intron (NM_198109, intron 14 of 14)	-36671.0	NM_011779	23790.0	Mm.260158	NM_011779	ENSMUSG00000004530	Coro1c	AL022675|AW455561|AW548837	coronin, actin binding protein 1C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-11098596-4	chr8	11098499	11098699	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-90169.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81693414-2	chr15	81693314	81693514	+	636.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164320, intron 3 of 5)	intron (NM_001164320, intron 3 of 5)	3873.0	NM_001164320	214685.0	Mm.393287	NM_001164320	ENSMUSG00000063765	Chadl	AY100452|D930017K21Rik	chondroadherin-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-51663385-4	chr6	51663260	51663460	+	926.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	118067.0	NM_001361577	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-27197158-2	chr7	27197058	27197258	+	993.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015782)	promoter-TSS (NM_015782)	-887.0	NM_001285825	53607.0	Mm.386890	NM_015782	ENSMUSG00000061479	Snrpa	C430021M15Rik|Rnu1a-1|Rnu1a1|U1-A|U1A	small nuclear ribonucleoprotein polypeptide A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-80255546-1	chr15	80255446	80255646	+	1000.0	f0_balb.idr	5' UTR (NM_009716, exon 1 of 3)	5' UTR (NM_009716, exon 1 of 3)	362.0	NM_009716	11911.0	Mm.641	NM_009716	ENSMUSG00000042406	Atf4	Atf-4|C/ATF|CREB2|TAXREB67	activating transcription factor 4	protein-coding	5.40160185035825	4.60267882399857	5.18089715875383	5.87217685336852	5.4391327154595	5.74741770675598	5.92166979748817	5.4955641113867	0.356689801907996	0.247235735460401	0.746589446789374
Merged-chr2-33430294-3	chr2	33430184	33430384	+	849.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085507, intron 1 of 2)	L2a|LINE|L2	1040.0	NM_001085507	241311.0	Mm.296512	NM_001085507	ENSMUSG00000068966	Zbtb34	Gm349|mKIAA1993	zinc finger and BTB domain containing 34	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127124865-2	chr10	127124765	127124965	+	634.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-3705.0	NM_001171026	216440.0	Mm.295246	NM_177614	ENSMUSG00000040462	Os9	4632413K17Rik|AU022351	amplified in osteosarcoma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-105020510-4	chr3	105020394	105020594	+	823.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030249, intron 3 of 5)	intron (NM_030249, intron 3 of 5)	32459.0	NM_001163332	80281.0	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96269120-4	chr3	96269042	96269242	+	862.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175666)	promoter-TSS (NM_175666)	488.0	NM_178215	319154.0	Mm.383293	NM_178215	ENSMUSG00000074403	Hist2h3b	H3-615|H3-616	histone cluster 2, H3b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-94866276-2	chr17	94866176	94866376	+	678.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001024731, intron 1 of 4)	intron (NM_001024731, intron 1 of 4)	1358.0	NM_001024731	100044193.0		NM_001024731	ENSMUSG00000095193	Gm20939	-	predicted gene, 20939	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-106686807-1	chr9	106686707	106686907	+	679.0	f1_balb.idr	promoter-TSS (NM_001286498)	promoter-TSS (NM_001286498)	-855.0	NM_001286498	21767.0	Mm.22266	NM_011573	ENSMUSG00000040813	Tex264	TEG-264	testis expressed gene 264	protein-coding	1.06773380165451	0.937271517437439	1.72562823180535	1.55832227692211	1.4862479947259	2.02103909214494	0.924057010296551	1.68131289306044	0.748523722954641	0.556562581373543	0.960321604678676
Merged-chr1-23175696-2	chr1	23175596	23175796	+	720.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73443.0	NM_025746	66755.0	Mm.431297	NM_025746	ENSMUSG00000073730	4933415F23Rik	-	RIKEN cDNA 4933415F23 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-68567656-2	chr14	68567556	68567756	+	726.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_021475, intron 12 of 13)	intron (NM_021475, intron 12 of 13)	14416.0	NM_021475	58860.0	Mm.36742	NM_021475	ENSMUSG00000022057	Adamdec1	2210414L24Rik|AI574231|Dcsn	ADAM-like, decysin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-82822836-2	chr18	82822736	82822936	+	755.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CAAAAA)n|Simple_repeat|Simple_repeat	-33061.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-30600667-4	chr10	30600574	30600774	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028604)	promoter-TSS (NM_028604)	26.0	NM_028604	73681.0	Mm.294503	NM_028604	ENSMUSG00000019792	Trmt11	2410075D05Rik|3110045I18Rik|AW213713	tRNA methyltransferase 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106716794-4	chr11	106716708	106716908	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1527.0	NM_001305157	18613.0	Mm.343951	NM_008816	ENSMUSG00000020717	Pecam1	C85791|Cd31|PECAM-1|Pecam	platelet/endothelial cell adhesion molecule 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-32435983-2	chr18	32435883	32436083	+	673.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001083334)	TTS (NM_001083334)	-57699.0	NR_045403	402767.0	Mm.385109	NR_045403	ENSMUSG00000097413	A830052D11Rik	-	RIKEN cDNA A830052D11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-22858242-4	chr11	22858142	22858342	+	997.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001169114, intron 1 of 1)	intron (NM_001169114, intron 1 of 1)	1493.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-26640493-7	chr2	26640371	26640571	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_024068)	promoter-TSS (NR_024068)	-227.0	NR_024068	72091.0	Mm.27103	NR_024068		Snhg7	2610002F03Rik|AI427062	small nucleolar RNA host gene 7	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-108850930-2	chr9	108850830	108851030	+	893.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359572, intron 35 of 35)	intron (NM_001359572, intron 35 of 35)	-3113.0	NM_134420	171429.0	Mm.45201	NM_134420	ENSMUSG00000023259	Slc26a6	B930010B04Rik|CFEX|Pat-1|Pat1	solute carrier family 26, member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-75675388-2	chr10	75675288	75675488	+	667.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172549, intron 29 of 36)	intron (NM_172549, intron 29 of 36)	-31380.0	NM_027890	71733.0	Mm.247956	NM_027890	ENSMUSG00000006342	Susd2	1200011D11Rik	sushi domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-8610621-4	chr11	8610542	8610742	+	959.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 2 of 30)	intron (NM_001083587, intron 2 of 30)	53893.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35046839-4	chr17	35046717	35046917	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146215)	promoter-TSS (NM_001146215)	-72.0	NM_001146215	17687.0	Mm.24192	NM_013600	ENSMUSG00000007035	Msh5	Mut5	mutS homolog 5	protein-coding	4.58271643628794	5.09246655391057	4.40077834145205	5.71011262207012	5.29060460016951	5.62858525178595	4.65591143261932	5.05540615505142	0.18240015567444	0.623748291101475	0.980259659844413
Merged-chr9-21952897-2	chr9	21952797	21952997	+	971.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2856.0	NM_025870	66962.0	Mm.46647	NM_025870	ENSMUSG00000051238	Swsap1	2310047B19Rik	SWIM type zinc finger 7 associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-8862140-4	chr10	8862050	8862250	+	974.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 1 of 19)	L2|LINE|L2	23920.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-40240658-4	chr1	40240560	40240760	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008362, intron 1 of 10)	intron (NM_008362, intron 1 of 10)	15580.0	NM_008362	16177.0	Mm.896	NM_008362	ENSMUSG00000026072	Il1r1	CD121a|CD121b|IL-1R1|IL-iR|Il1r-1	interleukin 1 receptor, type I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-73210738-2	chr14	73210638	73210838	+	640.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009029, intron 20 of 26)	intron (NM_009029, intron 20 of 26)	-3887.0	NR_030459	751541.0		NR_030459	ENSMUSG00000076121	Mir687	Mirn687|mir-687|mmu-mir-687	microRNA 687	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-95210887-4	chr10	95210774	95210974	+	915.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001330138, intron 2 of 2)	intron (NM_001330138, intron 2 of 2)	-65049.0	NR_131146	628062.0		NR_131146	ENSMUSG00000112481	Gm29684	-	predicted gene, 29684	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-8067082-4	chr10	8066982	8067182	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-110959.0	NM_138667	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	3.36015072249023	3.27205624591871	1.96335986949743	3.16352236470697	2.93872550562351	3.19340414333055	3.72102143607644	3.48560604261111	0.521203093772716	0.420241165015305	0.899938154067165
Merged-chr19-46340388-1	chr19	46340288	46340488	+	542.0	f1_balb.idr	Intergenic	CYRA11_Mm|Unknown|Y-chromosome	-1728.0	NM_001164292	67116.0	Mm.218848	NM_024192	ENSMUSG00000036748	Cuedc2	3010002G01Rik	CUE domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-29416535-3	chr17	29416450	29416650	+	958.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55636.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-8758040-5	chr10	8757911	8758111	+	865.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 8 of 19)	intron (NM_175155, intron 8 of 19)	128059.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-95973591-4	chr13	95973505	95973705	+	921.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029210, intron 12 of 12)	intron (NM_029210, intron 12 of 12)	-81683.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	3.66480750131427	3.41640435218095	3.181208109464	4.45953805739499	4.11923452523806	4.3669503252503	3.42919428341842	4.21477424527354	0.408218189252177	0.423100337355291	0.900322118218157
Merged-chr11-79652469-4	chr11	79652365	79652565	+	989.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175543, intron 3 of 14)	intron (NM_175543, intron 3 of 14)	22621.0	NR_045898	72218.0	Mm.443271	NR_045898	ENSMUSG00000086569	Rab11fip4os2	1700020F10Rik|4930542H20Rik|Rab11fib4os2	RAB11 family interacting protein 4 (class II), opposite strand 2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5486997-2	chr19	5486897	5487097	+	934.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153769, intron 3 of 14)	intron (NR_153769, intron 3 of 14)	1382.0	NM_027877	71711.0	Mm.27697	NM_027877	ENSMUSG00000024906	Mus81	1200008A18Rik|AI182501|AW045863	MUS81 structure-specific endonuclease subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-50369462-4	chr17	50369353	50369553	+	992.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-75833.0	NM_001277863	13164.0	Mm.280641	NM_010021	ENSMUSG00000010592	Dazl	Daz-like|Dazh|Dazl1|Dazla|Tpx-2|Tpx2	deleted in azoospermia-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-94699322-2	chr16	94699222	94699422	+	611.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	87903.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-47481497-2	chr12	47481397	47481597	+	579.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-662722.0	NM_021361	664883.0	Mm.247195	NM_021361	ENSMUSG00000021047	Nova1	9430099M15Rik|G630039L02|Nova-1	neuro-oncological ventral antigen 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-63432946-2	chr13	63432846	63433046	+	723.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1201.0	NM_001282942	14088.0	Mm.126106	NM_007985	ENSMUSG00000021461	Fancc	Facc	Fanconi anemia, complementation group C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-24463319-2	chr7	24463219	24463419	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011113, intron 1 of 6)	MIR|SINE|MIR	836.0	NM_011113	18793.0	Mm.1359	NM_011113	ENSMUSG00000046223	Plaur	Cd87|u-PAR|uPAR	plasminogen activator, urokinase receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-108019979-1	chr3	108019879	108020079	+	617.0	f1_c57bl6.idr	Intergenic	Intergenic	-2006.0	NM_010358	14862.0	Mm.37199	NM_010358	ENSMUSG00000058135	Gstm1	Gstb-1|Gstb1	glutathione S-transferase, mu 1	protein-coding	1.20961687324256	0.763754596926399	1.70307011290304	2.18211090961881	1.22131746490028	1.2263037425975	0.75045728611161	0.735484438638067	-2.10508224551355	0.13577695895154	0.575509134423666
Merged-chr5-139418549-2	chr5	139418449	139418649	+	910.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028469, intron 2 of 4)	intron (NM_028469, intron 2 of 4)	-4630.0	NM_029771	76854.0	Mm.389706	NM_029771	ENSMUSG00000053647	Gper1	6330420K13Rik|CMKRL2|Ceprl|FEG-1|GPCR-Br|Gper|Gpr30	G protein-coupled estrogen receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126749014-3	chr7	126748880	126749080	+	910.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-10646.0	NM_011952	26417.0	Mm.8385	NM_011952	ENSMUSG00000063065	Mapk3	Erk-1|Erk1|Ert2|Esrk1|Mnk1|Mtap2k|Prkm3|p44|p44erk1|p44mapk	mitogen-activated protein kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-110654805-2	chr9	110654705	110654905	+	658.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183276)	promoter-TSS (NM_183276)	-644.0	NM_183276	235627.0	Mm.335481	NM_183276	ENSMUSG00000056724	Nbeal2	1110014F23Rik|BC042396|mKIAA0540	neurobeachin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-105651474-6	chr5	105651436	105651636	+	794.388916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48433.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	-0.746608526814027	-0.977750842951689	-0.823658802616536	-0.837794581728899	-0.99301857383909	-0.975377503138894	-0.986223534952736	-0.835322943482395	-1.56367246038718	0.572387193303061	1
Merged-chr12-87407677-4	chr12	87407548	87407748	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19293.0	NM_011479	20773.0	Mm.565	NM_011479	ENSMUSG00000021036	Sptlc2	LCB2|LCB2a|Spt2	serine palmitoyltransferase, long chain base subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10854735-2	chr19	10854635	10854835	+	840.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_023044, intron 4 of 7)	intron (NM_023044, intron 4 of 7)	12191.0	NM_023044	65221.0	Mm.27387	NM_023044	ENSMUSG00000024737	Slc15a3	Ci1|cI-1	solute carrier family 15, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98973891-2	chr11	98973791	98973991	+	543.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001177303, exon 9 of 9)	3' UTR (NM_001177303, exon 9 of 9)	9019.0	NM_001361954	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-29289454-2	chr7	29289354	29289554	+	831.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_026731, exon 1 of 4)	exon (NM_026731, exon 1 of 4)	134.0	NM_026731	68458.0	Mm.2343	NM_026731	ENSMUSG00000037166	Ppp1r14a	1110001M11Rik|Cpi17	protein phosphatase 1, regulatory (inhibitor) subunit 14A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-55506161-4	chr12	55506055	55506255	+	690.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13508.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-3162107-3	chr11	3162026	3162226	+	978.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030207, intron 9 of 32)	intron (NM_030207, intron 9 of 32)	31337.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114944147-2	chr11	114944047	114944247	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9761.0	NM_199221	217304.0	Mm.185355	NM_199221	ENSMUSG00000063193	Cd300lb	CLM-7|Clm7|Gm253|LMIR5	CD300 molecule like family member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-98979914-4	chr9	98979819	98980019	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6454.0	NM_011810	23873.0	Mm.74605	NM_011810	ENSMUSG00000032463	Faim	-	Fas apoptotic inhibitory molecule	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24351608-2	chr17	24351510	24351710	+	1000.0	f0_c57.idr|f1_balb.idr	promoter-TSS (NM_013855)	promoter-TSS (NM_013855)	-413.0	NM_013855	27410.0	Mm.239470	NM_013855	ENSMUSG00000024130	Abca3	1810036E22Rik|ABC-C|Abc3	ATP-binding cassette, sub-family A (ABC1), member 3	protein-coding	4.88430263993398	4.14126237334214	4.00490408143644	4.4482496331315	4.74723691278215	3.93762647295349	4.1692743559128	3.76624779612145	-0.265356380588028	0.545909127008231	0.956736445492953
Merged-chr11-97416056-3	chr11	97415955	97416155	+	871.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-34105.0	NM_021493	58996.0	Mm.394118	NM_021493	ENSMUSG00000049807	Arhgap23	A330041B18Rik	Rho GTPase activating protein 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6390158-2	chr19	6390058	6390258	+	575.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011224, intron 11 of 19)	intron (NM_011224, intron 11 of 19)	5750.0	NM_011224	19309.0	Mm.27806	NM_011224	ENSMUSG00000032648	Pygm	AI115133|PG	muscle glycogen phosphorylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-64564002-2	chr17	64563902	64564102	+	620.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8412.0	NR_045899	100043582.0	Mm.11170	NR_045899	ENSMUSG00000073377	AU016765	-	expressed sequence AU016765	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-89293361-2	chr6	89293261	89293461	+	671.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7636.0	NR_131021	75131.0	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	Gm44205	RIKEN cDNA 4930512J16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139751272-2	chr5	139751201	139751401	+	842.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_026748)	TTS (NM_026748)	-14968.0	NM_174850	231830.0	Mm.240510	NM_174850	ENSMUSG00000036718	Micall2	A930021H16Rik|JRAB|MICAL-L2|mFLJ00139	MICAL-like 2	protein-coding	-1.21126401937928	-1.18612895332696	-1.19662667369145	-0.905677053183207	-1.21082540297107	-1.18385405353169	-0.874355872764029	-1.20370627581025	0.130889411444333	0.969106491518409	1
Merged-chr4-156034914-4	chr4	156034846	156035046	+	606.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029264, exon 15 of 15)	exon (NM_029264, exon 15 of 15)	8624.0	NM_021985	21936.0	Mm.3180	NM_009400	ENSMUSG00000041954	Tnfrsf18	AITR|Gitr	tumor necrosis factor receptor superfamily, member 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44655675-1	chr7	44655575	44655775	+	764.0	f1_c57bl6.idr	exon (NM_001271538, exon 5 of 41)	exon (NM_001271538, exon 5 of 41)	9828.0	NM_001271538	71960.0	Mm.158289	NM_028021	ENSMUSG00000030739	Myh14	2400004E04Rik|II-C|NHMCII|NMHC II-C	myosin, heavy polypeptide 14	protein-coding	2.77435051258635	2.25697809627402	2.67048378000207	2.11634456251873	1.90270048056175	1.5757176901607	1.27663247046731	1.99946104206802	-1.94467500944528	0.0404353718212912	0.286727217462046
Merged-chr3-89714513-3	chr3	89714416	89714616	+	820.611145	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357958)	promoter-TSS (NM_001357958)	-506.0	NM_001038587	56417.0	Mm.316628	NM_019655	ENSMUSG00000027951	Adar	AV242451|Adar1|Adar1p110|Adar1p150|DRADA|mZaADAR	adenosine deaminase, RNA-specific	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36869808-4	chr1	36869708	36869908	+	797.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018872, intron 4 of 40)	intron (NM_018872, intron 4 of 40)	69719.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-79794516-2	chr7	79794416	79794616	+	648.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008588)	promoter-TSS (NM_008588)	-926.0	NM_008588	17292.0	Mm.1404	NM_008588	ENSMUSG00000030544	Mesp1	bHLHc5	mesoderm posterior 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-152271520-1	chr3	152271420	152271620	+	608.0	f1_balb.idr	Intergenic	Intergenic	-5170.0	NM_199465	68810.0	Mm.200188	NM_199465	ENSMUSG00000039103	Nexn	1110046H09Rik|AA553326|NELIN	nexilin	protein-coding	-0.202500471717358	-0.655583835598239	-0.658889288426782	-0.661433489785496	-0.665019621783252	-0.654837534854276	-0.658161001983565	-0.130974292714595	0.263984665833299	0.928154930818539	1
Merged-chr2-71539188-3	chr2	71539066	71539266	+	623.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_039557, intron 2 of 3).2	intron (NR_039557, intron 2 of 3).2	-1275.0	NR_002854	111970.0	Mm.4543	NR_002854		Dlx1as	Dix1as|Dlx1os	distal-less homeobox 1, antisense	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-132029264-4	chr3	132029180	132029380	+	889.241699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56012.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	1.54250780231384	1.40643692274108	1.59091383177961	1.31700678262931	1.13570865885824	0.865919814373694	1.49332588166972	0.841699582798409	-1.45936563791502	0.269949377130633	0.773118863816042
Merged-chr8-44960298-2	chr8	44960198	44960398	+	617.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081286, intron 1 of 25)	MIR|SINE|MIR	10090.0	NM_001081286	14107.0	Mm.27365	NM_001081286	ENSMUSG00000070047	Fat1	2310038E12Rik|AU023433|Fath|mFat1	FAT atypical cadherin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-97020448-5	chr9	97020366	97020566	+	735.200012	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-2111.0	NM_145134	211949.0	Mm.491271	NM_145134	ENSMUSG00000046997	Spsb4	D030068E18Rik|SSB-4|Ssb4	splA/ryanodine receptor domain and SOCS box containing 4	protein-coding	-0.413270832553205	0.248879758316469	-0.403519686790488	-0.4071766335812	-0.41236239857827	0.260274020124072	-0.402476173372258	-0.406537021983025	0.0394809277679939	0.98817139586833	1
Merged-chr19-7558493-2	chr19	7558393	7558593	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001362425, intron 2 of 4)	ID_B1|SINE|B4	1008.0	NM_001362425	225845.0	Mm.274810	NM_139269	ENSMUSG00000060675	Pla2g16	AdPLA|C78643|HRSL3|Hrasls3|Hrev107|MLP-3	phospholipase A2, group XVI	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-155245241-2	chr1	155245141	155245341	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	86538.0	NM_021433	58244.0	Mm.66264	NM_021433	ENSMUSG00000026470	Stx6	2310039E05Rik|2410005I16Rik|AA437559|AI415714|AI845861	syntaxin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-84762323-2	chr18	84762223	84762423	+	596.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	18256.0	NR_155706	102641800.0		NR_155706		Gm38576	-	predicted gene, 38576	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-96409244-3	chr7	96409160	96409360	+	923.577759	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011858, intron 2 of 32)	intron (NM_011858, intron 2 of 32)	-67296.0	NR_046043	670727.0	Mm.421352	NR_046043	ENSMUSG00000085751	Gm15412	-	predicted gene 15412	ncRNA	3.22119844898782	3.03443981204011	4.11467969685782	3.40871554264618	3.89123468682794	4.69351089548715	4.79203281098788	4.2906153952938	1.29412864086715	0.00760637778708595	0.0897652334650399
Merged-chr5-18000326-4	chr5	18000219	18000419	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081143, intron 4 of 7)	intron (NM_001081143, intron 4 of 7)	37749.0	NM_001081143	242851.0	Mm.332230	NM_001081143	ENSMUSG00000028777	Gnat3	Ggust|Gtn	guanine nucleotide binding protein, alpha transducing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-29488085-2	chr17	29487985	29488185	+	597.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2960.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-66200001-4	chr14	66199907	66200107	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 2 of 30)	intron (NM_001162366, intron 2 of 30)	13817.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-5406912-3	chr16	5406837	5407037	+	668.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-150981.0	NM_027446	70511.0	Mm.45780	NM_027446	ENSMUSG00000022544	Eef2kmt	5730409G15Rik|Fam86|Fam86a|eEF2-KMT	eukaryotic elongation factor 2 lysine methyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-122298756-4	chr7	122298659	122298859	+	887.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316672, intron 2 of 16)	MIRb|SINE|MIR	9634.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-155097027-2	chr2	155096927	155097127	+	766.166626	f1_balb.idr|f1_c57bl6.idr	TTS (NR_040634)	TTS (NR_040634)	3052.0	NR_040634	100504268.0	Mm.410858	NR_040634	ENSMUSG00000087254	2310005A03Rik	-	RIKEN cDNA 2310005A03 gene	ncRNA	2.14480108151276	2.21733849616651	2.02799041655142	1.55742590554825	1.12440081344208	2.34035886911847	1.77514704388175	1.5646917147843	-0.629569483261478	0.550218520628792	0.958882219733107
Merged-chr11-3159532-2	chr11	3159433	3159633	+	1000.0	f0_balb.idr|f1_balb.idr	intron (NM_030207, intron 10 of 32)	MTD|LTR|ERVL-MaLR	33930.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-142752200-4	chr6	142752100	142752300	+	742.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-4486.0	NM_009908	12764.0	Mm.3820	NM_009908	ENSMUSG00000030282	Cmas	AW208911|CMPNeu5Ac|D6Bwg0250e	cytidine monophospho-N-acetylneuraminic acid synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-23584481-4	chr13	23584363	23584563	+	990.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_178194, exon 2 of 2)	3' UTR (NM_178194, exon 2 of 2)	1507.0	NM_001290530	319179.0	Mm.440391	NM_178194	ENSMUSG00000047246	Hist1h2be	-	histone cluster 1, H2be	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-83077570-1	chr8	83077470	83077670	+	733.333313	f0_balb.idr	intron (NM_177378, intron 6 of 6)	ORR1F|LTR|ERVL-MaLR	-87782.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	2.69352679839691	2.54723874452406	2.34485740286163	2.49805621839774	2.29316791413015	2.5657760208084	2.48170925532653	1.41493631552919	-0.589643358707362	0.48919670199113	0.934020055774918
Merged-chr10-80702100-4	chr10	80701987	80702187	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027829)	promoter-TSS (NM_027829)	-267.0	NM_172457	208228.0	Mm.49309	NM_172457	ENSMUSG00000003348	Mob3a	5330417K06Rik|A630029F06|AV218468|Mobkl2a	MOB kinase activator 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-115856627-2	chr3	115856527	115856727	+	793.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31432.0	NR_027894	68161.0	Mm.392043	NR_015487	ENSMUSG00000054426	A930005H10Rik	-	RIKEN cDNA A930005H10 gene	ncRNA	-0.295090015087872	-0.169993504440025	-0.646350065417806	-0.648758286722834	-0.512958721140918	-0.642507928291837	-0.645660082850654	-0.648338183737708	-2.27255288564399	0.400740587226729	1
Merged-chr3-116166454-4	chr3	116166279	116166479	+	874.020874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER104|DNA|TcMar-Tc2	-36691.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-40869385-4	chr17	40869272	40869472	+	863.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER67C|LTR|ERV1	11186.0	NM_027834	71583.0	Mm.158733	NM_027834	ENSMUSG00000054951	9130008F23Rik	-	RIKEN cDNA 9130008F23 gene	protein-coding	2.18243366012687	2.17746434756178	1.40730919100134	1.94072381542607	1.85863493210867	1.45192876408794	1.7555982978207	1.7055065652207	-0.791691601286211	0.434293894897912	0.906411599962625
Merged-chr4-134534502-4	chr4	134534426	134534626	+	974.116699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029759, intron 1 of 6)	CpG	570.0	NM_001355188	76824.0	Mm.30153	NM_029759	ENSMUSG00000046671	Mtfr1l	2410166I05Rik|AI480750|Fam54b	mitochondrial fission regulator 1-like	protein-coding	3.20865237719693	3.22352837733291	3.91523863983361	3.37705037203995	2.8954893357781	3.34917702050904	3.03121401133972	3.14120622873761	-0.583779752397089	0.31192452346144	0.813656822463875
Merged-chr11-20848502-1	chr11	20848402	20848602	+	597.5	f0_balb.idr	Intergenic	Intergenic	-17394.0	NM_173752	216551.0	Mm.76694	NM_173752	ENSMUSG00000042363	Lgalsl	1110067D22Rik|A530071M23|Grpa|Hspc159|Lgalsla	lectin, galactoside binding-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150497011-2	chr4	150496911	150497111	+	915.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 7 of 22)	intron (NM_001085492, intron 7 of 22)	155163.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-60707515-4	chr13	60707409	60707609	+	851.291626	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 3 of 26)	intron (NM_134062, intron 3 of 26)	78855.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	1.04286512577896	0.665011385073504	1.00697144538774	1.10702091117155	1.15858463344632	0.66733904323361	1.57271036670344	0.829555917830402	0.67080823994815	0.645542808234285	0.984116759910594
Merged-chr3-116662371-1	chr3	116662271	116662471	+	1000.0	f0_c57.idr	intron (NM_008246, intron 1 of 11)	CpG	306.0	NM_008246	15247.0	Mm.280077	NM_008246	ENSMUSG00000089911	Mfsd14a	Hiat1	major facilitator superfamily domain containing 14A	protein-coding	5.32630951277814	5.01049465003898	5.36460137718376	4.24800161903689	4.76902937750287	4.42163084644339	4.6205957131753	4.79767551954677	-0.474178625918703	0.190065915626457	0.668872953369056
Merged-chr1-86492461-3	chr1	86492368	86492568	+	915.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34089.0	NR_153834	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-25473974-3	chr15	25473948	25474148	+	995.8666380000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	59856.0	NR_027376	432939.0	Mm.146555	NM_001013791		Gm5468	100040583|EG432939	predicted gene 5468	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-79998135-2	chr10	79998035	79998235	+	580.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_013850, exon 3 of 46)	exon (NM_013850, exon 3 of 46)	520.0	NM_013850	27403.0	Mm.103351	NM_013850	ENSMUSG00000035722	Abca7	ABCX|Abc51	ATP-binding cassette, sub-family A (ABC1), member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19821991-3	chr7	19821853	19822053	+	816.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033601, intron 1 of 8)	intron (NM_033601, intron 1 of 8)	802.0	NM_033601	12051.0	Mm.439658	NM_033601	ENSMUSG00000053175	Bcl3	AI528691|Bcl-3	B cell leukemia/lymphoma 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-22730977-2	chr10	22730877	22731077	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011603, intron 1 of 6)	CpG	470.0	NM_011603	237336.0	Mm.86670	NM_011603	ENSMUSG00000071359	Tbpl1	4732475G08|AW011832|AW491032|D18347|STD|TLF|TRF2|TRP|Tlp	TATA box binding protein-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-117343605-6	chr2	117343463	117343663	+	934.111084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011246)	promoter-TSS (NM_011246)	-686.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-94289844-2	chr16	94289744	94289944	+	972.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_139145, intron 1 of 10)	intron (NM_139145, intron 1 of 10)	447.0	NM_001360045	110948.0	Mm.30921	NM_139145	ENSMUSG00000040820	Hlcs	410I21.SP6|D16Jhu34	holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-165717255-1	chr1	165717155	165717355	+	768.5	f0_balb.idr	Intergenic	IMPB_01|Satellite|Satellite	-9161.0	NM_178593	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-113865042-2	chr13	113864942	113865142	+	772.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172595, intron 1 of 4)	B3|SINE|B2	70534.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-83131847-4	chr8	83131708	83131908	+	987.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33544.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99583899-3	chr15	99583773	99583973	+	858.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009699, exon 4 of 4)	exon (NM_009699, exon 4 of 4)	4817.0	NM_009699	11827.0	Mm.20206	NM_009699	ENSMUSG00000023013	Aqp2	AQP-CD|WCH-CD|cph|jpk	aquaporin 2	protein-coding	1.29145526455841	0.846572073045265	0.444378228739555	0.436884161791476	1.30712566686322	0.855137833641128	0.44650821329183	0.438198297214264	0.0412536858973344	0.98151761503454	1
Merged-chr19-5801954-5	chr19	5801824	5802024	+	848.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_002847, exon 1 of 1)	non-coding (NR_002847, exon 1 of 1)	748.0	NR_002847	72289.0	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-25294647-2	chr12	25294554	25294754	+	669.75	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	165480.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	0.210480531383136	0.240391269399914	0.230757396186913	0.223217492460438	0.983153057558524	0.668191263967105	0.23289540336862	1.39417830771885	4.55908920526213	0.0176938346292514	1
Merged-chr11-12291619-2	chr11	12291501	12291701	+	633.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001282993, intron 8 of 13)	intron (NM_001282993, intron 8 of 13)	120539.0	NM_001282994	12808.0	Mm.22847	NM_172496	ENSMUSG00000020173	Cobl	-	cordon-bleu WH2 repeat	protein-coding	0.0924840900373101	-0.25496223710631	0.0546867578147146	0.344856241687154	-0.266803177019526	-0.254024882417194	-0.258198157561815	-0.261747865981151	-3.63899491642907	0.127067505668069	1
Merged-chr14-70977393-1	chr14	70977293	70977493	+	695.0	f0_balb.idr	intron (NM_001302094, intron 7 of 7)	intron (NM_001302094, intron 7 of 7)	87286.0	NM_001302094	14586.0	Mm.32619	NM_008115	ENSMUSG00000022103	Gfra2	-	glial cell line derived neurotrophic factor family receptor alpha 2	protein-coding	1.4934381301636	1.96913390706032	1.01948054008524	1.71546844224556	1.85500235915011	2.55888336980182	1.26964337745588	1.23512908515311	0.74653452662786	0.514688809713623	0.947017304411256
Merged-chr11-72429594-4	chr11	72429481	72429681	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR55|LTR|ERVL?	-5945.0	NM_027819	71522.0	Mm.23336	NM_027819	ENSMUSG00000040471	Ggt6	9030405D14Rik|AI427679|AW490214	gamma-glutamyltransferase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-7340153-2	chr19	7340053	7340253	+	833.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080388, intron 1 of 16)	intron (NM_001080388, intron 1 of 16)	1707.0	NM_001080389	13728.0	Mm.258986	NM_007928	ENSMUSG00000024969	Mark2	EMK-1|Emk|Par-1|Par-1b	MAP/microtubule affinity regulating kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-68249510-4	chr10	68249424	68249624	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023598, intron 2 of 9)	intron (NM_023598, intron 2 of 9)	29202.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	4.30988900901228	4.49457301113698	4.63734210306881	4.56166347269278	3.84100934774542	4.41338743768235	3.40698951217375	3.9676895962478	-0.735317398945579	0.0803448340053706	0.431760518839849
Merged-chr18-46457268-3	chr18	46457200	46457400	+	798.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8516.0	NR_045438	72076.0	Mm.82766	NM_028086		Mospd4	2010013H21Rik	motile sperm domain containing 4	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-76001712-1	chr2	76001612	76001812	+	555.0	f1_c57bl6.idr	intron (NM_001081033, intron 19 of 19)	intron (NM_001081033, intron 19 of 19)	-19745.0	NM_030188	78802.0	Mm.282339	NM_030188	ENSMUSG00000075271	Ttc30a1	4930506L13Rik	tetratricopeptide repeat domain 30A1	protein-coding	0.862634714979786	0.297944489725446	1.16880123139474	0.458015988517132	0.563703385954784	0.299619372279614	0.292138181432827	0.461276497372153	-2.16594421432948	0.233717575282407	1
Merged-chr1-132155055-2	chr1	132154955	132155155	+	660.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C2|LTR|ERVK	-15370.0	NM_008795	18557.0	Mm.28130	NM_008795	ENSMUSG00000026437	Cdk18	AA682070|Ctk18|Pctk3	cyclin-dependent kinase 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-122194745-2	chr2	122194645	122194845	+	709.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_028914, intron 5 of 6)	Lx8|LINE|L1	8473.0	NM_028914	74401.0	Mm.374834	NM_028914	ENSMUSG00000027229	Terb2	4933406J08Rik	telomere repeat binding bouquet formation protein 2	protein-coding	0.108494574709224	-0.103805724123606	-0.107199832532136	0.146163613145074	0.114137580951178	-0.103034645404681	0.0451402264240258	0.253939840338589	0.667415556426812	0.749889848767835	1
Merged-chr2-173186567-4	chr2	173186430	173186630	+	841.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32392.0	NM_021394	58203.0	Mm.116687	NM_021394	ENSMUSG00000027514	Zbp1	2010010H03Rik|Dai|Dlm1|mZaDLM	Z-DNA binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-85029118-4	chr6	85029026	85029226	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177077, intron 1 of 21)	intron (NM_177077, intron 1 of 21)	40387.0	NM_177077	75914.0	Mm.159621	NM_177077	ENSMUSG00000033769	Exoc6b	4930569O18Rik|G430127E12Rik|Sec15b|Sec15l2|mKIAA0919	exocyst complex component 6B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-74853881-3	chr17	74853791	74853991	+	881.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152817, intron 16 of 19)	intron (NM_152817, intron 16 of 19)	136141.0	NM_152817	74196.0	Mm.209503	NM_152817	ENSMUSG00000024078	Ttc27	2610511O17Rik	tetratricopeptide repeat domain 27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-83064952-2	chr1	83064852	83065052	+	818.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4022.0	NM_027778	71386.0	Mm.389133	NM_027778	ENSMUSG00000101315	Krtap28-13	5530401N06Rik	keratin associated protein 28-13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-69971641-4	chr7	69971548	69971748	+	999.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	366174.0	NR_131145	624549.0	Mm.116344	NR_131144	ENSMUSG00000109097	Gm29683	Gm44536	predicted gene, 29683	ncRNA	3.1193912646867	3.41751628559354	1.56960361333708	2.96189087638896	2.10321562553099	3.17945566607968	3.47470496417958	3.15101557349611	0.23527412554056	0.759370660223862	0.998431161219273
Merged-chr13-37997836-3	chr13	37997638	37997838	+	674.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-3530.0	NM_001360842	107513.0	Mm.426670	NM_025965	ENSMUSG00000021427	Ssr1	2510001K09Rik|6330400D04|AI159733|AI452176|SSR|TRAPA	signal sequence receptor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-20060789-3	chr10	20060691	20060891	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008580, intron 10 of 29)	intron (NM_008580, intron 10 of 29)	-88129.0	NM_008635	17761.0	Mm.20928	NM_008635	ENSMUSG00000019996	Map7	E-MAP-115|MAP-7|Mtap7|R75000|mshi|mste|ste	microtubule-associated protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-113864963-1	chr6	113864863	113865063	+	749.0	f0_balb.idr	intron (NM_009723, intron 3 of 21)	intron (NM_009723, intron 3 of 21)	26576.0	NM_001036684	11941.0	Mm.321755	NM_009723	ENSMUSG00000030302	Atp2b2	D6Abb2e|Gena300|PMCA2|Tmy|dfw|jog|wms|wri	ATPase, Ca++ transporting, plasma membrane 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-14035042-4	chr10	14034945	14035145	+	979.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358783, intron 2 of 12)	MER20|DNA|hAT-Charlie	68666.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	3.19143883407848	3.16352537407294	2.61726032556598	3.14239408153241	2.84803717343299	3.36224930038076	2.14282882741281	2.79337185184377	-0.350315268474145	0.605383790785214	0.974576632476413
Merged-chr6-47651025-6	chr6	47650927	47651127	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4067.0	NR_002841	19799.0		NR_002841		Rn4.5s	-	4.5S RNA	rRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-111101932-4	chr11	111101874	111102074	+	972.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	35810.0	NM_008425	16518.0	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding	2.62226700848506	2.37227522685475	2.6019344170267	2.65318263181807	3.59559815228921	3.72037817165178	2.4756979018474	3.07284765845728	1.32602129229812	0.0506430219922778	0.327849808199649
Merged-chr7-132366679-2	chr7	132366579	132366779	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1A|DNA|hAT-Charlie	-49451.0	NM_029935	77590.0	Mm.213582	NM_029935	ENSMUSG00000030930	Chst15	4631426J05Rik|BRAG|GalNAc4S-6ST|GalNAcS-6ST|MAd5|mKIAA0598	carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123696214-2	chr5	123696114	123696314	+	852.416626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-11853.0	NM_001359222	56430.0	Mm.241109	NM_019765	ENSMUSG00000049550	Clip1	1110007I12Rik|4631429H07Rik|AV017631|C81039|CLIP-170|CLIP170|CYLN1|Clip50|Rsn|mKIAA4046|restin	CAP-GLY domain containing linker protein 1	protein-coding	2.49657888490035	2.58674895002305	1.40957467332319	2.53463031415168	2.20275702942344	2.47683369045685	3.38495218824044	2.1814628133572	0.677081579921674	0.434643448250738	0.906825659421346
Merged-chr5-135398222-1	chr5	135398122	135398322	+	540.0	f1_c57bl6.idr	Intergenic	Intergenic	-3676.0	NM_148932	107939.0	Mm.28399	NM_148932	ENSMUSG00000053293	Pom121	2610027A18Rik|C80273|mKIAA0618	nuclear pore membrane protein 121	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-42272444-2	chr19	42272344	42272544	+	691.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7726.0	NR_037246	100526549.0		NR_037246	ENSMUSG00000093234	Mir3085	mir-3085|mmu-mir-3085	microRNA 3085	ncRNA	0.10180036812749	0.168996058192417	-0.458765568771988	-0.461945867672296	-0.466441388317513	-0.453715830279063	-0.457856552223113	-0.461390222254425	-3.54920469070616	0.18408391585641	1
Merged-chr6-29485966-2	chr6	29485866	29486066	+	747.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001029985, intron 31 of 37)	intron (NM_001029985, intron 31 of 37)	14529.0	NM_001145360	668210.0	Mm.420607	NM_001145360	ENSMUSG00000090685	Gm9047	EG668210	predicted gene 9047	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-107588482-4	chr8	107588367	107588567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010817)	promoter-TSS (NM_010817)	15.0	NM_010817	17463.0	Mm.18347	NM_010817	ENSMUSG00000039067	Psmd7	AW107203|Mov-34|Mov34	proteasome (prosome, macropain) 26S subunit, non-ATPase, 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-70356245-2	chr4	70356145	70356345	+	678.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001313762, intron 5 of 33)	intron (NM_001313762, intron 5 of 33)	54190.0	NM_001313762	214444.0	Mm.370777	NM_145990	ENSMUSG00000039298	Cdk5rap2	2900018K03Rik|an|mKIAA1633	CDK5 regulatory subunit associated protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-3670583-2	chr8	3670479	3670679	+	587.25	f0_balb.idr|f0_c57.idr	TTS (NM_001357661)	TTS (NM_001357661)	1812.0	NM_001357661	100503924.0	Mm.415621	NM_001357661	ENSMUSG00000089665	Fcor	2400009B08Rik	Foxo1 corepressor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-79762495-2	chr1	79762351	79762551	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001111279)	promoter-TSS (NM_001111279)	-682.0	NM_027057	69368.0	Mm.293273	NM_027057	ENSMUSG00000073643	Wdfy1	1700013B03Rik|1700120F24Rik|FENS-1|Jr1|WDF1|ZFYVE17|mKIAA1435	WD repeat and FYVE domain containing 1	protein-coding	1.99216019882741	1.94360345640053	2.34621408976924	0.975089863833059	0.948720663824163	1.02066631940699	1.88715044379053	1.69964413848136	-1.29862481912557	0.303589171481167	0.805462835517226
Merged-chr5-121864684-1	chr5	121864584	121864784	+	677.0	f1_c57bl6.idr	exon (NM_001312908, exon 22 of 23)	exon (NM_001312908, exon 22 of 23)	15687.0	NM_001359949	231717.0	Mm.12654	NM_175474	ENSMUSG00000044134	Fam109a	A230106M15Rik|AU017694|IPIP27A|Ses1	family with sequence similarity 109, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-92901025-2	chr16	92900925	92901125	+	722.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74951.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91548158-4	chr16	91548059	91548259	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008338, intron 1 of 6)	intron (NM_008338, intron 1 of 6)	1065.0	NM_008338	15980.0	Mm.249364	NM_008338	ENSMUSG00000022965	Ifngr2	Ifgr2|Ifgt	interferon gamma receptor 2	protein-coding	4.20545079913541	5.27226142331906	3.98939402523147	5.38791862666834	5.30913547918857	5.08863868852432	2.72218451339962	4.94776878977318	-0.0531070253601176	0.944109233001043	0.998431161219273
Merged-chr6-142994109-2	chr6	142994009	142994209	+	661.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29657.0	NM_011374	20449.0	Mm.260838	NM_011374	ENSMUSG00000030283	St8sia1	9330109E03Rik|GD3S|Sia-T|Siat8|Siat8a	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-67216801-2	chr7	67216701	67216901	+	966.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_131044, intron 2 of 2)	MLTR14|LTR|ERV1	5657.0	NR_131044	76628.0	Mm.384589	NR_131043	ENSMUSG00000097527	1700112J16Rik	-	RIKEN cDNA 1700112J16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-34883727-1	chr4	34883627	34883827	+	540.0	f0_balb.idr	promoter-TSS (NM_013889)	promoter-TSS (NM_013889)	-779.0	NM_013889	30046.0	Mm.38193	NM_013889	ENSMUSG00000039967	Zfp292	5730450D02Rik|5830493J20Rik|9430062L07Rik|AI449016|Krox-10|Zfp-15|Zfp15|Zn-15|Zn-16|mKIAA0530	zinc finger protein 292	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-35098460-1	chr7	35098360	35098560	+	601.0	f1_balb.idr	Intergenic	L1MB2|LINE|L1	-20833.0	NM_001287521	12606.0	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-8909726-2	chr4	8909626	8909826	+	751.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	158402.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-95749307-3	chr12	95749213	95749413	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201518, intron 1 of 1)	intron (NM_201518, intron 1 of 1)	57087.0	NM_201518	399558.0	Mm.341948	NM_201518	ENSMUSG00000047414	Flrt2	-	fibronectin leucine rich transmembrane protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-94549128-4	chr11	94549043	94549243	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001013381)	promoter-TSS (NM_001013381)	64.0	NM_001013381	237926.0	Mm.342275	NM_001013381	ENSMUSG00000039096	Rsad1	B430319G23|BC056485	radical S-adenosyl methionine domain containing 1	protein-coding	5.57966582408009	5.3124386302088	5.6883510129171	5.86098267383492	5.08440402619539	5.55101615459136	5.29444456909879	5.82500602958882	-0.186326346474163	0.507801152618815	0.943374049681311
Merged-chr2-117386703-4	chr2	117386578	117386778	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43801.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	5.19929487084858	5.22036438189872	5.17301777679899	5.82350558551638	4.8446791018582	5.84193166397451	5.75541426766194	5.26271688229776	0.100295459477927	0.751561460503983	0.998431161219273
Merged-chr16-34416980-3	chr16	34416871	34417071	+	849.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177357, intron 1 of 59)	intron (NM_177357, intron 1 of 59)	97056.0	NM_001164268	545156.0	Mm.82274	NM_177357	ENSMUSG00000061751	Kalrn	2210407G14Rik|AV235988|DUET|E530005C20Rik|Gm539|Hapip|TRAD	kalirin, RhoGEF kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69946200-2	chr11	69946100	69946300	+	933.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359114, intron 3 of 10)	intron (NM_001359114, intron 3 of 10)	1990.0	NM_009204	20528.0	Mm.10661	NM_009204	ENSMUSG00000018566	Slc2a4	GT2|Glut-4|Glut4|twgy	solute carrier family 2 (facilitated glucose transporter), member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-34907865-2	chr2	34907765	34907965	+	961.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028716, intron 3 of 14)	intron (NM_028716, intron 3 of 14)	6111.0	NM_028716	74016.0	Mm.65691	NM_028716	ENSMUSG00000026873	Phf19	3110009G19Rik|3321402G02Rik	PHD finger protein 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-90669101-4	chr3	90669018	90669218	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013650)	promoter-TSS (NM_013650)	47.0	NM_013650	20201.0	Mm.21567	NM_013650	ENSMUSG00000056054	S100a8	60B8Ag|AI323541|B8Ag|CFAg|CP-10|Caga|MRP8|p8	S100 calcium binding protein A8 (calgranulin A)	protein-coding	3.98891688645145	4.63437521746765	5.25522436898131	3.87213906854163	4.28368954014045	5.07151115824178	5.28968285787189	4.10124664613971	0.275280258520076	0.538641055789545	0.954314144619457
Merged-chr7-128115708-2	chr7	128115608	128115808	+	783.900024	f1_balb.idr|f1_c57bl6.idr	intron (NM_008401, intron 24 of 29)	intron (NM_008401, intron 24 of 29)	-13860.0	NM_021334	16411.0	Mm.22378	NM_021334	ENSMUSG00000030789	Itgax	AI449405|Cd11c|Cr4|N418	integrin alpha X	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100713905-4	chr11	100713837	100714037	+	863.4874880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029307)	promoter-TSS (NM_029307)	87.0	NM_029307	75482.0	Mm.46175	NM_029307	ENSMUSG00000017832	Hspb9	1700007H20Rik	heat shock protein, alpha-crystallin-related, B9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-63929337-4	chr3	63929204	63929404	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357824)	promoter-TSS (NM_001357824)	168.0	NM_177856	329659.0	Mm.39342	NM_177856	ENSMUSG00000048581	E130311K13Rik	-	RIKEN cDNA E130311K13 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-36282279-2	chr13	36282179	36282379	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039189, intron 3 of 5)	intron (NM_001039189, intron 3 of 5)	164636.0	NM_001039189	69955.0	Mm.70690	NM_024274	ENSMUSG00000021420	Fars2	Fars1|pheRS	phenylalanine-tRNA synthetase 2 (mitochondrial)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-89310646-2	chr4	89310546	89310746	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007670, intron 1 of 1)	CpG	386.0	NM_007670	12579.0	Mm.423094	NM_007670	ENSMUSG00000073802	Cdkn2b	AV083695|INK4b|MTS2|p15|p15(INK4b)|p15INK4b	cyclin dependent kinase inhibitor 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-27168726-2	chr7	27168626	27168826	+	607.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_029391, exon 8 of 8)	3' UTR (NM_029391, exon 8 of 8)	-1924.0	NM_053208	112406.0	Mm.29978	NM_053208	ENSMUSG00000058709	Egln2	0610011A13Rik|C85656|Hif-p4h-1|Ier4|Phd1|SM-20	egl-9 family hypoxia-inducible factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167349360-4	chr2	167349277	167349477	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019835)	promoter-TSS (NM_019835)	-199.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-84171473-4	chr7	84171343	84171543	+	899.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19550.0	NM_133722	70178.0	Mm.23914	NM_133722	ENSMUSG00000038459	Abhd17c	2210412D01Rik|AL023007|Fam108c|Fam108c1	abhydrolase domain containing 17C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-26858490-4	chr14	26858410	26858610	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-36094.0	NM_001170748	142687.0	Mm.138259	NM_080856	ENSMUSG00000021898	Asb14	Asb-14	ankyrin repeat and SOCS box-containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-43037477-3	chr10	43037374	43037574	+	939.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175407, intron 5 of 6)	intron (NM_175407, intron 5 of 6)	-46312.0	NR_153349	327749.0	Mm.428887	NR_153349		Gm5079	C230040G06	predicted gene 5079	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-55836269-4	chr12	55836173	55836373	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001037756)	promoter-TSS (NM_001037756)	-93.0	NM_001037756	52592.0	Mm.24761	NM_027867	ENSMUSG00000012076	Brms1l	0710008O11Rik|AI159718|BRMS1|D12Ertd407e	breast cancer metastasis-suppressor 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-124073761-2	chr1	124073661	124073861	+	619.5	f0_balb.idr|f0_c57.idr	Intergenic	B1_Mur1|SINE|Alu	-28202.0	NM_199021	269109.0	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-143529155-2	chr5	143529055	143529255	+	746.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-1124.0	NM_001347530	19353.0	Mm.292510	NM_009007	ENSMUSG00000001847	Rac1	AL023026|D5Ertd559e	Rac family small GTPase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-173409203-4	chr1	173409109	173409309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11395.0	NM_001013779	383619.0	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	4.02010115693167	4.3058964834429	4.80525767746175	4.17249481116076	4.46572372060814	4.67470589942188	4.06407887628065	4.58611671910224	0.143132458999579	0.720678656528184	0.998431161219273
Merged-chr17-31834857-3	chr17	31834766	31834966	+	941.2777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	20938.0	NM_010831	17691.0	Mm.290941	NM_010831	ENSMUSG00000024042	Sik1	Hrt-20|Msk|Sik|Sik-1|Snf1lk	salt inducible kinase 1	protein-coding	3.9646290755442	4.8109148894814	4.04824912559049	2.91194301878415	2.04790800753749	2.56631215424782	2.27303258392886	1.41387803988793	-3.24224791008858	7.16100202934933e-06	0.000350208025875543
Merged-chr2-23023939-4	chr2	23023839	23024039	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077190, intron 1 of 10)	intron (NM_001077190, intron 1 of 10)	16302.0	NM_001077192	11308.0	Mm.205647	NM_007380	ENSMUSG00000058835	Abi1	E3B1|NAP1|Ssh3bp1|abi-1	abl-interactor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-46412124-3	chr18	46412017	46412217	+	676.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER21B|LTR|ERV1	53699.0	NR_045438	72076.0	Mm.82766	NM_028086		Mospd4	2010013H21Rik	motile sperm domain containing 4	pseudo	2.18168551426481	2.30647497687281	1.76765320837121	2.14577372740867	3.4488222526255	4.20494791829895	2.83990717641816	3.62001529633549	2.71218367757449	0.000160571167355559	0.00454370958946225
Merged-chr7-101066709-4	chr7	101066606	101066806	+	886.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42069.0	NM_001146010	207278.0	Mm.263041	NM_199012	ENSMUSG00000030691	Fchsd2	BC034086|R74866|Sh3md3|mKIAA0769	FCH and double SH3 domains 2	protein-coding	3.13571846004757	3.39208646117366	3.34292808674447	3.53383882796896	1.17360083527201	2.33285994280848	1.29449840434318	1.2471074491289	-3.91590491583508	4.18027959012067e-05	0.0015106926060924
Merged-chr13-48550725-4	chr13	48550611	48550811	+	986.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12439.0	NR_029725	387244.0		NR_029725	ENSMUSG00000065421	Mirlet7a-1	Let-7a|Mirnlet7a|Mirnlet7a-1|let-7a-1	microRNA let7a-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124847465-4	chr6	124847352	124847552	+	959.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013534, intron 9 of 14)	intron (NM_013534, intron 9 of 14)	-7177.0	NM_013530	14695.0	Mm.68889	NM_013530	ENSMUSG00000023439	Gnb3	Gnb-3	guanine nucleotide binding protein (G protein), beta 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-35462261-2	chr16	35462161	35462361	+	763.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028295, intron 3 of 16)	intron (NM_028295, intron 3 of 16)	28612.0	NM_028295	72599.0	Mm.71015	NM_028295	ENSMUSG00000022844	Pdia5	2700053F16Rik|AU015525|Pdir	protein disulfide isomerase associated 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-122773035-3	chr2	122772924	122773124	+	734.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027888, intron 1 of 9)	intron (NR_027888, intron 1 of 9)	1311.0	NR_027888	59010.0	Mm.28986	NM_021507	ENSMUSG00000005803	Sqor	0610039J17Rik|4930557M22Rik|Sqrdl	sulfide quinone oxidoreductase	protein-coding	1.11512841285034	2.45217669846643	2.25462918305521	1.78784642134567	1.12209056912735	2.66984335023934	1.85725813458197	2.65152928085747	0.523960287370375	0.629343401621907	0.981201918729827
Merged-chr11-78803941-7	chr11	78803837	78804037	+	991.857117	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22658.0	NM_001076681	66274.0	Mm.258932	NM_001076681	ENSMUSG00000072640	Lyrm9	1810012P15Rik	LYR motif containing 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-11000040-4	chr16	10999947	11000147	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6926.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-47770316-2	chr6	47770216	47770416	+	582.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER12B|LTR|ERVK	-17391.0	NR_002841	19799.0		NR_002841		Rn4.5s	-	4.5S RNA	rRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-19217641-2	chr3	19217541	19217741	+	596.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356295, intron 6 of 7)	B1_Mus2|SINE|Alu	29346.0	NM_001356295	67472.0	Mm.45125	NM_026182	ENSMUSG00000027601	Mtfr1	1300002C08Rik|1700080D04Rik|2810026O10Rik|4930579E05Rik|Chppr|Fam54a2	mitochondrial fission regulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100468263-2	chr7	100468163	100468363	+	761.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001017985, intron 32 of 32)	intron (NM_001017985, intron 32 of 32)	-4728.0	NM_009464	22229.0	Mm.6254	NM_009464	ENSMUSG00000032942	Ucp3	AI645527|Slc25a9|UCP-3	uncoupling protein 3 (mitochondrial, proton carrier)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-61516153-2	chr8	61516053	61516253	+	766.700012	f1_balb.idr|f1_c57bl6.idr	intron (NM_001293772, intron 19 of 21)	intron (NM_001293772, intron 19 of 21)	28419.0	NM_145595	234309.0	Mm.29059	NM_145595	ENSMUSG00000031641	Cbr4	A730083J17Rik|BC009118	carbonyl reductase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-91847625-2	chr12	91847525	91847725	+	762.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039089, intron 1 of 20)	intron (NM_001039089, intron 1 of 20)	1532.0	NM_001039089	20338.0	Mm.250605	NM_011344	ENSMUSG00000020964	Sel1l	AW493766|Sel1h|mKIAA4137	sel-1 suppressor of lin-12-like (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-134638630-2	chr5	134638530	134638730	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_033561, intron 1 of 6)	CpG	779.0	NM_001312867	22384.0	Mm.27955	NM_033561	ENSMUSG00000040731	Eif4h	AU018978|D5Ertd355e|E430026L18Rik|Ef4h|Wbscr1|Wscr1|eIF-4H	eukaryotic translation initiation factor 4H	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-128887540-4	chr6	128887429	128887629	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289707)	promoter-TSS (NM_001289707)	-58.0	NM_001289706	93675.0	Mm.391513	NM_020257	ENSMUSG00000030365	Clec2i	Clr-g|Clrg|Dcl1|LCL-1|OCILrP2	C-type lectin domain family 2, member i	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-8785482-3	chr13	8785340	8785540	+	810.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	85604.0	NM_001039389	207615.0	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-58453935-1	chr16	58453835	58454035	+	683.0	f0_balb.idr	intron (NM_001356484, intron 9 of 15)	ID_B1|SINE|B4	45400.0	NM_028523	73379.0	Mm.373589	NM_028523	ENSMUSG00000035107	Dcbld2	1700055P21Rik|AW146002|CLCP1|Esdn	discoidin, CUB and LCCL domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-8686317-4	chr16	8686212	8686412	+	933.525024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5542.0	NM_001324517	436336.0	Mm.357666	NM_001324517		Gm5767	EG436336|Gm43786	predicted gene 5767	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33590714-2	chr16	33590614	33590814	+	593.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083902, intron 5 of 11)	intron (NM_001083902, intron 5 of 11)	72119.0	NM_001083902	171286.0	Mm.35253	NM_134251	ENSMUSG00000035506	Slc12a8	CCC9|E330020C02Rik	solute carrier family 12 (potassium/chloride transporters), member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-29405612-2	chr2	29405512	29405712	+	570.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290490, intron 3 of 5)	intron (NM_001290490, intron 3 of 5)	27098.0	NM_001290490	68975.0	Mm.330109	NM_026896	ENSMUSG00000026799	Med27	1500015J03Rik|2310042P07Rik|AA682045|Crsp8|D2Ertd434e	mediator complex subunit 27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-4120835-3	chr10	4120720	4120920	+	916.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170785, intron 26 of 27)	intron (NM_001170785, intron 26 of 27)	92300.0	NR_152620	102632515.0	Mm.416995	NR_152620	ENSMUSG00000111266	Gm30570	-	predicted gene, 30570	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-70751328-4	chr17	70751249	70751449	+	817.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347411, intron 9 of 14)	intron (NM_001347411, intron 9 of 14)	95428.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	1.93570519634051	1.54998491616872	2.00919624786665	1.9510047711602	1.66483457814395	1.72254617613104	1.51404985773893	1.09954068753821	-1.14803424334561	0.291150467525722	0.795843706570537
Merged-chr7-48923822-1	chr7	48923722	48923922	+	710.333313	f0_balb.idr	Intergenic	Intergenic	-35251.0	NM_001111016	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139481305-2	chr5	139481205	139481405	+	938.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133349, intron 3 of 6)	B1_Mur1|SINE|Alu	3186.0	NM_133349	100494.0	Mm.24521	NM_133349	ENSMUSG00000053581	Zfand2a	AA407930|AU016206|Airap	zinc finger, AN1-type domain 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126948467-1	chr7	126948367	126948567	+	540.0	f1_balb.idr	exon (NM_001347657, exon 1 of 3)	exon (NM_001347657, exon 1 of 3)	692.0	NM_001347657	233879.0	Mm.444143	NM_001039645	ENSMUSG00000046378	Asphd1	A830007L07Rik|Gm168	aspartate beta-hydroxylase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-82023525-2	chr11	82023425	82023625	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR11B|LTR|ERVK	-12052.0	NM_011333	20296.0	Mm.290320	NM_011333	ENSMUSG00000035385	Ccl2	AI323594|HC11|JE|MCAF|MCP-1|MCP1|SMC-CF|Scya2|Sigje	chemokine (C-C motif) ligand 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-58773498-4	chr1	58773399	58773599	+	644.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-21875.0	NM_009812	12370.0	Mm.336851	NM_009812	ENSMUSG00000026029	Casp8	CASP-8|FLICE|MACH|Mch5	caspase 8	protein-coding	0.264293394561364	0.140048777669758	0.697903860169071	0.129632323723357	0.601318398493167	0.141373831245984	0.709047705983029	0.130425086730115	0.615208835402681	0.761632229909359	1
Merged-chr15-38270527-2	chr15	38270427	38270627	+	587.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29373.0	NM_001357677	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-145906069-3	chr2	145905970	145906170	+	713.916687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026425, intron 1 of 5)	B2_Mm1t|SINE|B2	2829.0	NM_001141965	67877.0	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80064129-2	chr10	80064029	80064229	+	620.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359635, intron 16 of 31)	intron (NM_001359635, intron 16 of 31)	10110.0	NM_001037741	625249.0	Mm.332810	NM_008162	ENSMUSG00000075706	Gpx4	GPx-4|GSHPx-4|PHGPx|mtPHGPx|snGPx	glutathione peroxidase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-43781585-2	chr7	43781485	43781685	+	812.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_133712, exon 2 of 6)	exon (NM_133712, exon 2 of 6)	531.0	NM_133712	69540.0	Mm.46421	NM_133712	ENSMUSG00000030693	Klk10	2300002A13Rik|NES1|PRSSL1	kallikrein related-peptidase 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-75102957-2	chr10	75102857	75103057	+	583.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081412, intron 1 of 22)	MLT1A0|LTR|ERVL-MaLR	42061.0	NM_001081412	110279.0	Mm.333722	NM_001081412	ENSMUSG00000009681	Bcr	5133400C09Rik|AI561783|AI853148|mKIAA3017	breakpoint cluster region	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95529550-2	chr3	95529450	95529650	+	670.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001267695, exon 2 of 8)	exon (NM_001267695, exon 2 of 8)	2764.0	NM_001267695	13040.0	Mm.3619	NM_021281	ENSMUSG00000038642	Ctss	Cats	cathepsin S	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-96378780-2	chr10	96378680	96378880	+	546.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	152573.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-78016512-2	chr10	78016412	78016612	+	554.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6705.0	NM_001358793	18641.0	Mm.269649	NM_008826	ENSMUSG00000020277	Pfkl	AA407869|ATP-PFK|PFK-B|PFK-L	phosphofructokinase, liver, B-type	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-105496846-4	chr11	105496728	105496928	+	898.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40093.0	NM_001039242	632687.0	Mm.121570	NM_172568	ENSMUSG00000078627	March10	4933417C16Rik|AV039223|Rnf190	membrane-associated ring finger (C3HC4) 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-57591036-1	chr8	57590936	57591136	+	584.0	f1_balb.idr	intron (NM_001167981, intron 1 of 11)	intron (NM_001167981, intron 1 of 11)	-60717.0	NR_040698	100502619.0	Mm.393851	NR_040698		AW046200	-	expressed sequence AW046200	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118235159-4	chr11	118235116	118235316	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	13376.0	NM_001112699	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-82765406-4	chr18	82765292	82765492	+	959.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6353.0	NR_045389	76961.0	Mm.396392	NR_045389	ENSMUSG00000101773	2210420H20Rik	-	RIKEN cDNA 2210420H20 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-51481597-4	chr10	51481508	51481708	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001291893, exon 3 of 8)	exon (NM_001291893, exon 3 of 8)	996.0	NM_001291892	14727.0	Mm.439661	NM_008147	ENSMUSG00000112023	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45414303-2	chr7	45414203	45414403	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198190, intron 1 of 2)	intron (NM_198190, intron 1 of 2)	608.0	NM_198190	78405.0	Mm.20344	NM_198190	ENSMUSG00000074121	Ntf5	2900040K06Rik|AI462899|NT-4|NT-5|NT4|NT4/5|Ntf-5|Ntf4	neurotrophin 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126597171-2	chr8	126597071	126597271	+	706.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3735.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-4523361-2	chr7	4523261	4523461	+	810.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009406)	promoter-TSS (NM_009406)	-833.0	NM_009406	21954.0	Mm.27674	NM_009406	ENSMUSG00000035458	Tnni3	Tn1|cTnI	troponin I, cardiac 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-40302271-4	chr10	40302157	40302357	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007444)	promoter-TSS (NM_007444)	-69.0	NM_009665	11702.0	Mm.253533	NM_009665	ENSMUSG00000075232	Amd1	AdoMetDC|Amd-1|SAMDC|SAMDC 1|adoMetDC1	S-adenosylmethionine decarboxylase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-52385401-4	chr10	52385245	52385445	+	746.895874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3221.0	NM_001199272	94221.0	Mm.390258	NM_053187	ENSMUSG00000019861	Gopc	2210402P09Rik|AI844555|CAL|FIG|GOPC1|PIST	golgi associated PDZ and coiled-coil motif containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59392180-3	chr15	59392019	59392219	+	983.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164604, intron 2 of 4)	intron (NM_001164604, intron 2 of 4)	17921.0	NM_001164604	68501.0	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-81524765-3	chr17	81524685	81524885	+	838.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 2 of 8)	intron (NR_104580, intron 2 of 8)	213602.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-136492390-4	chr6	136492297	136492497	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26454.0	NM_019426	54343.0	Mm.173271	NM_019426	ENSMUSG00000030213	Atf7ip	2610204M12Rik|AM|Mcaf1	activating transcription factor 7 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-5902161-1	chr11	5902061	5902261	+	553.0	f1_c57bl6.idr	exon (NM_010292, exon 9 of 10)	exon (NM_010292, exon 9 of 10)	-3379.0	NM_022879	17898.0	Mm.46514	NM_022879	ENSMUSG00000020469	Myl7	MLC-2alpha|MLC2a|MYL2A|Mylc2a|RLC-A	myosin, light polypeptide 7, regulatory	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-113781740-2	chr9	113781640	113781840	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114347, intron 6 of 39)	Lx9|LINE|L1	-11590.0	NM_001286603	76499.0	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117227571-3	chr8	117227513	117227713	+	916.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29406.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-100922218-4	chr3	100922129	100922329	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001165953)	promoter-TSS (NM_001165953)	-264.0	NM_001165952	229644.0	Mm.189351	NM_194343	ENSMUSG00000033233	Trim45	4921530N01Rik	tripartite motif-containing 45	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-36717521-2	chr15	36717359	36717559	+	592.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	73473.0	NM_001253807	22631.0	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99433058-3	chr7	99432955	99433155	+	773.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362168, intron 4 of 17)	intron (NM_001362168, intron 4 of 17)	-32949.0	NM_028145	72184.0	Mm.153585	NM_028145	ENSMUSG00000035298	Klhl35	2810406K13Rik	kelch-like 35	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102162996-3	chr12	102162895	102163095	+	848.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172152, intron 2 of 16)	intron (NM_172152, intron 2 of 16)	34268.0	NM_172152	238384.0	Mm.312448	NM_172152	ENSMUSG00000041771	Slc24a4	A930002M03Rik|AW492432|NCKX4	solute carrier family 24 (sodium/potassium/calcium exchanger), member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-6405800-1	chr4	6405700	6405900	+	547.0	f1_balb.idr	intron (NM_010945, intron 27 of 30)	Lx10|LINE|L1	40120.0	NM_001098227	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-32930518-2	chr14	32930418	32930618	+	555.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178791, intron 7 of 7)	intron (NM_178791, intron 7 of 7)	-60864.0	NM_001146021	67580.0	Mm.46115	NM_026253	ENSMUSG00000041673	Lrrc18	4930442L21Rik|MTLR1	leucine rich repeat containing 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-116049214-2	chr12	116049114	116049314	+	622.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019565, intron 1 of 2)	intron (NM_019565, intron 1 of 2)	1490.0	NM_019565	56220.0	Mm.254997	NM_019565	ENSMUSG00000042063	Zfp386	Kzf1|mKIAA4205	zinc finger protein 386 (Kruppel-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-60538024-4	chr11	60537939	60538139	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_172943, exon 1 of 4)	5' UTR (NM_172943, exon 1 of 4)	356.0	NM_172943	268420.0	Mm.262056	NM_172943	ENSMUSG00000042650	Alkbh5	AW050020|AW215868|Abh5|E130207K11|Ofoxd	alkB homolog 5, RNA demethylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-34054566-4	chr11	34054459	34054659	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010696, intron 3 of 20)	intron (NM_010696, intron 3 of 20)	7631.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-95326092-3	chr4	95325984	95326184	+	634.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-231423.0	NM_001113412	75578.0	Mm.276098	NM_029347	ENSMUSG00000028573	Fggy	2310009E04Rik	FGGY carbohydrate kinase domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-108318214-2	chr4	108318114	108318314	+	707.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9938.0	NM_027250	69893.0	Mm.28354	NM_027250	ENSMUSG00000048351	Coa7	2010305A19Rik|AI451324|D4Ertd796e|Selrc1	cytochrome c oxidase assembly factor 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-11001884-4	chr16	11001792	11001992	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7006.0	NR_040518	100043147.0	Mm.489001	NR_040518	ENSMUSG00000097056	Gm4262	-	predicted gene 4262	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-33658038-4	chr5	33657939	33658139	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310541)	promoter-TSS (NM_001310541)	-62.0	NM_001356985	68366.0	Mm.491151	NM_026698	ENSMUSG00000019295	Tmem129	0610039G24Rik|2410015J15Rik|AA409575	transmembrane protein 129	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-27861064-4	chr7	27860939	27861139	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024726, intron 1 of 4)	intron (NM_001024726, intron 1 of 4)	454.0	NM_001024726	545938.0	Mm.458180	NM_001024726	ENSMUSG00000020420	Zfp607a	4732475C15Rik|Zfp607	zinc finger protein 607A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45026810-1	chr7	45026710	45026910	+	858.0	f1_c57bl6.idr	TTS (NM_175022)	TTS (NM_175022)	7213.0	NM_001360133	20130.0	Mm.389894	NM_009101	ENSMUSG00000038387	Rras	AI573426	related RAS viral (r-ras) oncogene	protein-coding	1.79904437933374	3.05663789820707	2.29289921993644	2.87156931953469	1.81377423040324	3.16226188954894	2.69198833587963	2.4979320763048	0.0606873768356512	0.941028643256298	0.998431161219273
Merged-chr5-110269291-3	chr5	110269230	110269430	+	657.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028273, intron 1 of 5)	intron (NM_028273, intron 1 of 5)	569.0	NM_028273	72542.0	Mm.61682	NM_028273	ENSMUSG00000029500	Pgam5	2610528A17Rik	phosphoglycerate mutase family member 5	protein-coding	-0.270143632507353	-0.601276817555883	-0.604161830773173	-0.457585657614307	-0.609474317348742	-0.600623464863698	-0.300236309243789	-0.455093277829979	-0.129753903593394	0.959456690959413	1
Merged-chr2-78871228-2	chr2	78871128	78871328	+	840.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356395, intron 2 of 5)	intron (NM_001356395, intron 2 of 5)	1550.0	NR_151457	22193.0	Mm.1485	NM_009454	ENSMUSG00000027011	Ube2e3	Ubce4|ubcM2	ubiquitin-conjugating enzyme E2E 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-20622533-4	chr16	20622421	20622621	+	978.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177940, intron 2 of 18)	intron (NM_177940, intron 2 of 18)	-1243.0	NM_028420	73047.0	Mm.425977	NM_028420	ENSMUSG00000051146	Camk2n2	2900075A18Rik	calcium/calmodulin-dependent protein kinase II inhibitor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-45020966-2	chr10	45020866	45021066	+	619.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-46248.0	NM_011156	19072.0	Mm.10281	NM_011156	ENSMUSG00000019849	Prep	AI047692|AI450383|D10Wsu136e|PEP|Pop	prolyl endopeptidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-80938839-4	chr12	80938738	80938938	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6561.0	NR_045057	100504661.0	Mm.442322	NR_045057	ENSMUSG00000112880	Gm20337	-	predicted gene, 20337	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-82358606-2	chr15	82358483	82358683	+	643.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4292.0	NM_025987	67130.0	Mm.27570	NM_025987	ENSMUSG00000022450	Ndufa6	14kDa|2700038D15Rik|B230217P19Rik	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 6 (B14)	protein-coding	-0.276530739815125	-0.63699660054666	-0.640403132238471	-0.643026435153032	-0.00233129066881277	-0.636227739063133	-0.639652412242567	-0.642568464212044	1.01660784876101	0.726686765579508	1
Merged-chr2-145888166-4	chr2	145888067	145888267	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_028724)	TTS (NM_028724)	-15074.0	NM_026425	67877.0	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	4.87960812860032	4.90961393336593	4.02239283182772	4.76131236241699	5.20930780828364	5.06782624531082	4.32825888717685	4.74335253284241	0.23514227079767	0.527848044105363	0.948961270024856
Merged-chr8-94397474-4	chr8	94397362	94397562	+	874.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	11033.0	NM_022331	64209.0	Mm.29151	NM_022331	ENSMUSG00000031770	Herpud1	Herp|Mifl|SUP	homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1	protein-coding	0.958872755091914	1.06294347028991	1.83008863560933	0.794788179196066	0.776550811858305	1.92218046476691	1.22420924248839	1.68615150900997	0.823719482437965	0.546726132369534	0.957608779002871
Merged-chr4-21727739-4	chr4	21727689	21727889	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290420)	promoter-TSS (NM_001290420)	88.0	NM_001290420	51813.0	Mm.278584	NM_016746	ENSMUSG00000028252	Ccnc	AI451004|AU020987|CG1C	cyclin C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-31352384-2	chr15	31352284	31352484	+	619.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027496, intron 1 of 3)	intron (NM_027496, intron 1 of 3)	15375.0	NM_001357923	67434.0	Mm.102470	NM_026153	ENSMUSG00000022237	Ankrd33b	0610012A05Rik|3021401C12Rik|5730557B15Rik	ankyrin repeat domain 33B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-27926651-4	chr15	27926555	27926755	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081302, intron 1 of 56)	intron (NM_001081302, intron 1 of 56)	99193.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-77341817-3	chr8	77341673	77341873	+	877.361084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030113, intron 18 of 22)	intron (NM_030113, intron 18 of 22)	-175283.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-65616531-2	chr17	65616431	65616631	+	857.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TA)n|Simple_repeat|Simple_repeat	-2976.0	NM_013933	30960.0	Mm.266767	NM_013933	ENSMUSG00000024091	Vapa	33kDa|VAP33	vesicle-associated membrane protein, associated protein A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-21683017-4	chr14	21682903	21683103	+	821.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013826, intron 3 of 3)	intron (NM_001013826, intron 3 of 3)	31573.0	NM_001013826	435391.0	Mm.295860	NM_001013826	ENSMUSG00000063821	Dupd1	EG435391	dual specificity phosphatase and pro isomerase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-21995465-4	chr16	21995377	21995577	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001083894)	promoter-TSS (NM_001083894)	65.0	NM_001289582	239759.0	Mm.33192	NM_153404	ENSMUSG00000044626	Liph	C130037N08Rik|D16Wsu119e|H06|Lpdlr|P3|PLA1B|lpd1|lpd2|mPA-PLA1	lipase, member H	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-47103655-2	chr13	47103555	47103755	+	578.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025900, intron 2 of 10)	intron (NM_025900, intron 2 of 10)	2566.0	NM_025900	110052.0	Mm.131150	NM_025900	ENSMUSG00000021377	Dek	1810019E15Rik|D13H6S231E	DEK oncogene (DNA binding)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91937284-2	chr2	91937184	91937384	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166597, intron 21 of 31)	intron (NM_001166597, intron 21 of 31)	-4987.0	NM_010784	17242.0	Mm.906	NM_010784	ENSMUSG00000027239	Mdk	MK|Mek	midkine	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-83463390-2	chr15	83463290	83463490	+	678.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358643, intron 1 of 9)	intron (NM_001358643, intron 1 of 9)	1216.0	NM_001358641	23970.0	Mm.23978	NM_011862	ENSMUSG00000016664	Pacsin2	AI197433	protein kinase C and casein kinase substrate in neurons 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-105294120-4	chr5	105294018	105294218	+	980.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_194336)	promoter-TSS (NM_194336)	-419.0	NM_194336	100702.0	Mm.491210	NM_194336	ENSMUSG00000104713	Gbp6	AI595338|Mpa2l	guanylate binding protein 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-35765891-2	chr1	35765791	35765991	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-302509.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-12307918-4	chr17	12307849	12308049	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357722, intron 1 of 25)	intron (NM_001357722, intron 1 of 25)	10711.0	NM_011948	26407.0	Mm.28587	NM_011948	ENSMUSG00000014426	Map3k4	D17Rp17|D17Rp17e|MAPKKK4|MEKK 4|MTK1|Mek4b|Mekk4|RP17|Rp17a|Tas|mKIAA0213	mitogen-activated protein kinase kinase kinase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53860193-4	chr4	53860092	53860292	+	944.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028053, exon 6 of 6)	3' UTR (NM_028053, exon 6 of 6)	34147.0	NM_028053	52076.0	Mm.27184	NM_028053	ENSMUSG00000028420	Tmem38b	1600017F22Rik|AA437809|AV051057|D4Ertd89e|TRIC-B|mg33b	transmembrane protein 38B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80038787-1	chr10	80038687	80038887	+	546.0	f1_c57bl6.idr	intron (NM_025554, intron 1 of 6)	intron (NM_025554, intron 1 of 6)	872.0	NM_025554	66420.0	Mm.18579	NM_025554	ENSMUSG00000004667	Polr2e	2410021N14Rik|25kDa|AW208866|RPB5|XAP4	polymerase (RNA) II (DNA directed) polypeptide E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141762814-3	chr4	141762759	141762959	+	847.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172338, exon 15 of 15)	3' UTR (NM_172338, exon 15 of 15)	16184.0	NM_001081408	75986.0	Mm.30032	NM_001081408	ENSMUSG00000040706	Agmat	5033405N08Rik	agmatine ureohydrolase (agmatinase)	protein-coding	0.670293219265607	1.53028319528073	0.697284492868285	0.687255730283271	1.43259924576882	1.42358002461513	0.911916239279517	1.42434413387256	1.47962332250471	0.326651164537219	0.829159521604561
Merged-chr2-62458412-2	chr2	62458312	62458512	+	761.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25241.0	NM_008100	14526.0	Mm.45494	NM_008100	ENSMUSG00000000394	Gcg	GLP-1|Glu|PPG	glucagon	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-68124445-1	chr10	68124345	68124545	+	726.0	f1_balb.idr	intron (NM_023598, intron 7 of 9)	intron (NM_023598, intron 7 of 9)	144875.0	NM_001359319	170799.0	Mm.209844	NM_133244	ENSMUSG00000037846	Rtkn2	B130039D23Rik|Mbf|Plekhk1	rhotekin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-90225019-4	chr11	90224928	90225128	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24448.0	NM_026178	67468.0	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-82952738-1	chr15	82952638	82952838	+	580.0	f1_balb.idr	Intergenic	Intergenic	6558.0	NR_037241	100526477.0		NR_037241	ENSMUSG00000092751	Mir3080	mmu-mir-3080	microRNA 3080	ncRNA	1.3161421542386	0.731657082030113	0.526098784862347	0.317230041101197	0.307065208331335	0.335496953729658	1.0852031010592	0.318476880029411	-1.0968309436818	0.553846764872475	1
Merged-chr3-18054438-2	chr3	18054338	18054538	+	787.5	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_021560, exon 1 of 1)	5' UTR (NM_021560, exon 1 of 1)	113.0	NM_021560	59058.0	Mm.149938	NM_021560	ENSMUSG00000025128	Bhlhe22	Beta3|Beta3a|Bhlhb5	basic helix-loop-helix family, member e22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-88599620-4	chr9	88599530	88599730	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040766)	promoter-TSS (NR_040766)	-387.0	NR_040766	320692.0	Mm.427378	NR_040766	ENSMUSG00000097073	9430037G07Rik	-	RIKEN cDNA 9430037G07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-108447940-4	chr5	108447811	108448011	+	773.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172883, intron 1 of 9)	intron (NM_172883, intron 1 of 9)	1189.0	NM_001359977	243197.0	Mm.106818	NM_172883	ENSMUSG00000029490	Mfsd7a	4732482E20Rik|Mfsd7|Slc49a3	major facilitator superfamily domain containing 7A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-13838742-4	chr6	13838667	13838867	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001330666, exon 2 of 4)	5' UTR (NM_001330666, exon 2 of 4)	1175.0	NM_001330666	64450.0	Mm.167625	NM_145066	ENSMUSG00000048216	Gpr85	2900026B03Rik	G protein-coupled receptor 85	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127662256-4	chr10	127662173	127662373	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122895, intron 5 of 5)	intron (NM_001122895, intron 5 of 5)	4430.0	NM_001122895	17937.0	Mm.336898	NM_008668	ENSMUSG00000025402	Nab2	AI451907	Ngfi-A binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-59321308-2	chr10	59321208	59321408	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Arthur1B|DNA|hAT-Tip100	-1988.0	NM_001316371	18451.0	Mm.2212	NM_011030	ENSMUSG00000019916	P4ha1	AL022634|P4ha	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-59345881-4	chr19	59345790	59345990	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033222)	promoter-TSS (NM_001033222)	-110.0	NM_001033222	107368.0	Mm.27250	NM_001033222	ENSMUSG00000074746	Pdzd8	A630041P07Rik|AV329468|AW228944|Pdzk8	PDZ domain containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-110780614-4	chr5	110780519	110780719	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347390)	promoter-TSS (NM_001347390)	-4.0	NM_001025562	56361.0	Mm.23528	NM_019700	ENSMUSG00000029507	Pus1	A730013B20Rik|MPUS1|mPus1p	pseudouridine synthase 1	protein-coding	4.12458188672168	2.29865158672526	3.56017566297309	2.50691948285591	3.44778811583693	2.8661437514087	4.02456553958392	3.40272050165674	0.222961460777842	0.737291800912482	0.998431161219273
Merged-chr3-122209065-3	chr3	122208962	122209162	+	743.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36495.0	NM_008129	14630.0	Mm.292676	NM_008129	ENSMUSG00000028124	Gclm	AI649393|Gcmc|Glclr	glutamate-cysteine ligase, modifier subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-59253047-4	chr4	59252902	59253102	+	871.991699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7049.0	NR_105031	101055769.0	Mm.421401	NR_105031		Gm12596	-	predicted gene 12596	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-65650424-2	chr13	65650324	65650524	+	551.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	371570.0	NM_178364	170936.0	Mm.151546	NM_178364	ENSMUSG00000021514	Zfp369	B930030B22Rik|D230020H11Rik|NRIF2	zinc finger protein 369	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-4238753-4	chr8	4238668	4238868	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164172)	promoter-TSS (NM_001164172)	28.0	NM_001164172	26400.0	Mm.3906	NM_011944	ENSMUSG00000002948	Map2k7	5930412N11Rik|JNKK 2|Jnkk2|MAPKK 7|MEK 7|Mapkk7|Mek7|Mkk7|Prkmk7|sek2	mitogen-activated protein kinase kinase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-84262515-2	chr7	84262415	84262615	+	600.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_007488, exon 17 of 19)	exon (NM_007488, exon 17 of 19)	-110622.0	NM_133722	70178.0	Mm.23914	NM_133722	ENSMUSG00000038459	Abhd17c	2210412D01Rik|AL023007|Fam108c|Fam108c1	abhydrolase domain containing 17C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-20855311-2	chr5	20855211	20855411	+	663.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_172992, intron 1 of 17)	intron (NM_172992, intron 1 of 17)	26813.0	NM_172992	68770.0	Mm.86410	NM_172992	ENSMUSG00000039987	Phtf2	1110054G21Rik|9530062N20Rik|AI447096|C77923	putative homeodomain transcription factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-57182102-3	chr16	57182009	57182209	+	895.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358433, intron 14 of 18)	intron (NM_001358433, intron 14 of 18)	-14777.0	NM_023175	52633.0	Mm.383203	NM_023175	ENSMUSG00000022751	Nit2	1190017B19Rik|D16Ertd502e	nitrilase family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-91679206-4	chr6	91679115	91679315	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4852.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70022401-4	chr14	70022307	70022507	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028560, intron 4 of 6)	intron (NM_028560, intron 4 of 6)	-55038.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32257087-2	chr2	32256987	32257187	+	650.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011675, intron 5 of 6)	intron (NM_011675, intron 5 of 6)	3018.0	NM_011675	22245.0	Mm.425076	NM_011675	ENSMUSG00000002550	Uck1	URK1|Umpk	uridine-cytidine kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-31399771-3	chr6	31399658	31399858	+	888.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040300)	promoter-TSS (NR_040300)	930.0	NM_013791	27418.0	Mm.238038	NM_013791	ENSMUSG00000025609	Mkln1	A130067F06Rik|AU015903|BB154892	muskelin 1, intracellular mediator containing kelch motifs	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-21022593-4	chr2	21022468	21022668	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53694.0	NR_033225	433408.0	Mm.386941	NR_033225		Gm13375	-	predicted gene 13375	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-65272286-3	chr18	65272137	65272337	+	658.138916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037294, intron 12 of 12)	intron (NM_001037294, intron 12 of 12)	23376.0	NR_029600	387231.0		NR_029600	ENSMUSG00000065402	Mir122	Mir122a|Mirn122a|mir-122|mmu-mir-122	microRNA 122	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167714015-2	chr2	167713915	167714115	+	564.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22838.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-52760339-1	chr18	52760239	52760439	+	608.0	f0_balb.idr	Intergenic	MER92C|LTR|ERV1	-7472.0	NM_026408	67847.0	Mm.292168	NM_026408	ENSMUSG00000024534	Sncaip	2810407O15Rik|4933427B05Rik|BB104594|SYPH1	synuclein, alpha interacting protein (synphilin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55109459-2	chr14	55109359	55109559	+	558.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_177049, exon 5 of 6)	exon (NM_177049, exon 5 of 6)	-2866.0	NM_007455	11766.0	Mm.238879	NM_007455	ENSMUSG00000040701	Ap1g2	Adtg2|G2ad	adaptor protein complex AP-1, gamma 2 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-58179766-4	chr11	58179663	58179863	+	859.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_175001)	TTS (NM_175001)	-4080.0	NM_001135115	631323.0	Mm.394103	NM_001135115		Gm12250	Irgb10	predicted gene 12250	protein-coding	0.986638826141202	1.87687253352721	1.05125897650841	1.02736265138044	1.38155945560756	1.4313202016781	1.5091944705412	1.03156940898134	0.172599470021397	0.889986768967421	0.998431161219273
Merged-chr12-69372537-4	chr12	69372468	69372668	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_007481, exon 2 of 2)	5' UTR (NM_007481, exon 2 of 2)	418.0	NM_007481	11845.0	Mm.27308	NM_007481	ENSMUSG00000044147	Arf6	AI788669|AW496366	ADP-ribosylation factor 6	protein-coding	0.463737758153796	0.324507676599938	0.315201777504929	1.02124380864733	1.39580840512153	0.735812340359636	0.317264465470598	0.309213284856248	1.03865673460516	0.573020936607	1
Merged-chr9-58231950-4	chr9	58231868	58232068	+	964.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178087, intron 4 of 8)	intron (NM_178087, intron 4 of 8)	10818.0	NR_105806	102466639.0		NR_105806	ENSMUSG00000098886	Mir6385	Gm28021|mmu-mir-6385	microRNA 6385	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-15792089-2	chr1	15791989	15792189	+	624.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13557.0	NM_009352	21749.0	Mm.4306	NM_009352	ENSMUSG00000025925	Terf1	Pin2|Trbf1|Trf1	telomeric repeat binding factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-70830313-2	chr17	70830213	70830413	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1|SINE|Alu	16464.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-87213278-1	chr14	87213178	87213378	+	685.0	f0_balb.idr	Intergenic	Intergenic	-72054.0	NM_019670	56419.0	Mm.440585	NM_019670	ENSMUSG00000022021	Diaph3	4930417P13Rik|Dia2|Diap3|Drf3|p134MDia2	diaphanous related formin 3	protein-coding	0.400860631631103	0.422184218980559	0.588839222688579	0.571161336278466	0.964530026589155	0.777502649520484	0.985096068941655	0.713302883801129	2.66969127089814	0.119519694689388	1
Merged-chr3-12370747-1	chr3	12370647	12370847	+	554.0	f1_c57bl6.idr	Intergenic	ETnERV3-int|LTR|ERVK	-526388.0	NR_040751	100038545.0	Mm.388494	NR_040751	ENSMUSG00000104015	Gm10745	-	predicted gene 10745	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114812320-2	chr11	114812220	114812420	+	793.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	13396.0	NM_181749	217302.0	Mm.269127	NM_181749	ENSMUSG00000034677	Gpr142	PGR2	G protein-coupled receptor 142	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-145168205-4	chr2	145168109	145168309	+	913.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356497, intron 1 of 16)	CpG	434.0	NM_001356497	94249.0	Mm.217171	NM_053195	ENSMUSG00000063873	Slc24a3	NCKX3	solute carrier family 24 (sodium/potassium/calcium exchanger), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132033465-2	chr4	132033365	132033565	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183428, intron 1 of 20)	B2_Mm2|SINE|B2	15613.0	NM_001128606	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-3450995-2	chr8	3450895	3451095	+	841.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133962, intron 14 of 19)	intron (NM_133962, intron 14 of 19)	16653.0	NM_026951	69129.0	Mm.45279	NM_026951	ENSMUSG00000069633	Pex11g	1810022F11Rik|1810049N02Rik|Pex11c|Pex11gamma	peroxisomal biogenesis factor 11 gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-101783460-4	chr2	101783349	101783549	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355625, intron 1 of 8)	intron (NM_001355625, intron 1 of 8)	14258.0	NM_175181	72446.0	Mm.24138	NM_175181	ENSMUSG00000032841	Prr5l	2600010E01Rik|4833411O04Rik|Protor-2|Protor2	proline rich 5 like	protein-coding	6.11447415909659	5.43140245106839	6.33456967622645	5.93142648254484	5.85263863768701	6.01220963543047	6.37247590856654	5.89598535341164	0.0545043762304211	0.830164091966103	0.998431161219273
Merged-chr18-34391027-4	chr18	34390931	34391131	+	966.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-17616.0	NM_007874	13476.0	Mm.280075	NM_007874	ENSMUSG00000005873	Reep5	AI324241|AU022809|AW495741|DP1/TB2|Dp1|R74856|TB2/DP1	receptor accessory protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-157459375-1	chr1	157459275	157459475	+	657.0	f1_c57bl6.idr	intron (NM_001033284, intron 2 of 9)	intron (NM_001033284, intron 2 of 9)	807.0	NM_001356419	226527.0	Mm.215960	NM_001033284	ENSMUSG00000033488	Cryzl2	-	crystallin zeta like 2	protein-coding	0.320558091849363	0.049595478158018	0.655018121130798	0.970407104696284	0.0300910328571272	0.0511154397435668	0.0443220098802915	0.0384889834046623	-4.1732016660284	0.0470074352732894	1
Merged-chr2-112262633-3	chr2	112262510	112262710	+	857.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_025403, exon 2 of 2)	3' UTR (NM_025403, exon 2 of 2)	684.0	NM_025403	66181.0	Mm.272346	NM_025403	ENSMUSG00000027133	Nop10	1110036B12Rik|NOP10P|Nola3	NOP10 ribonucleoprotein	protein-coding	1.24776501827569	0.839717932901606	0.59218195645954	0.955012179312871	0.906176711439728	0.608183060377953	1.91988714544267	0.790066386211875	1.00650497239683	0.493666099033504	0.935679785535167
Merged-chr5-125278561-4	chr5	125278444	125278644	+	989.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205082, intron 11 of 11)	intron (NM_001205082, intron 11 of 11)	62550.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88179156-2	chr3	88179056	88179256	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1371.0	NR_045997	76642.0	Mm.424420	NR_045997	ENSMUSG00000096935	1700113A16Rik	2210408E11Rik|AA408983	RIKEN cDNA 1700113A16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-9649576-4	chr4	9649489	9649689	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290367, intron 1 of 22)	intron (NM_001290367, intron 1 of 22)	-5872.0	NM_001177852	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	6.0141624240148	6.57046570808555	6.18476309902607	5.72260163667969	5.60208936268659	6.79517656668697	6.20447986576905	5.12227354223501	-0.0987090470772438	0.756389450857744	0.998431161219273
Merged-chr7-82648526-4	chr7	82648419	82648619	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177894)	promoter-TSS (NM_177894)	9.0	NM_177894	330577.0	Mm.222812	NM_177894	ENSMUSG00000038570	Saxo2	1700129I04Rik|D030069K18|Fam154b	stabilizer of axonemal microtubules 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165333371-4	chr2	165333269	165333469	+	918.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-6890.0	NM_207706	140579.0	Mm.35064	NM_080287	ENSMUSG00000017670	Elmo2	1190002F24Rik|CED-12	engulfment and cell motility 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-29038730-1	chr7	29038630	29038830	+	594.5	f1_balb.idr	intron (NM_009109, intron 87 of 105)	intron (NM_009109, intron 87 of 105)	44964.0	NR_035489	100316710.0		NR_035489	ENSMUSG00000089219	Mir1963	mir-1963|mmu-mir-1963	microRNA 1963	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-52391287-4	chr3	52391165	52391365	+	899.354126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	122928.0	NM_019739	56458.0	Mm.29891	NM_019739	ENSMUSG00000044167	Foxo1	AI876417|Afxh|FKHR|Fkhr1|Foxo1a	forkhead box O1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-132827714-2	chr7	132827614	132827814	+	828.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001347629, exon 4 of 4)	3' UTR (NM_001347629, exon 4 of 4)	-14518.0	NM_212473	77938.0	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-40834870-4	chr9	40834779	40834979	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33606.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	4.79120626175589	4.1142179171308	4.24507407858754	4.24471699555324	4.73180420845094	4.41657358179523	4.59892736319582	4.56024952020865	0.252923486363024	0.507146321420611	0.943006780176123
Merged-chr13-112602780-4	chr13	112602696	112602896	+	959.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145885, intron 18 of 21)	intron (NM_001145885, intron 18 of 21)	-22134.0	NM_139299	218624.0	Mm.380801	NM_139299	ENSMUSG00000050377	Il31ra	CRL3|GLM-R|GPL|Glmr|NR10	interleukin 31 receptor A	protein-coding	3.43298237839525	3.37957953582233	3.70611785677767	2.63891660088924	3.04004194161084	3.6491931198565	2.74000004827418	2.78211531903379	-0.401034731124582	0.520126708893897	0.947641799425091
Merged-chr18-46273765-4	chr18	46273669	46273869	+	976.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172627, intron 2 of 8)	intron (NM_172627, intron 2 of 8)	7081.0	NM_172627	225467.0	Mm.262096	NM_172627	ENSMUSG00000024477	Pggt1b	2010207C17Rik|2610100E13|AI451237|AI551093|BGG1|GGT1	protein geranylgeranyltransferase type I, beta subunit	protein-coding	4.25460708223582	3.73154811510861	3.12249562074816	4.16726972444881	2.9969733927255	3.9130126118724	3.63589804296966	3.2600623231446	-0.60174104072962	0.262889678664951	0.764210232100327
Merged-chr19-21764152-2	chr19	21764087	21764287	+	663.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14153.0	NM_001033759	83921.0	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	-1.43172712806865	-1.3992492906874	-1.40907085678131	-1.41713858359971	-0.932192548427885	-1.39712091634321	-1.40684746950024	-1.41569446435649	2.19283191591698	0.528233640655333	1
Merged-chr1-191563054-2	chr1	191562954	191563154	+	588.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001305233, intron 7 of 15)	intron (NM_001305233, intron 7 of 15)	12490.0	NM_029766	76843.0	Mm.189102	NM_029766	ENSMUSG00000037474	Dtl	2810047L02Rik|5730564G15Rik|L2dtl|Ramp	denticleless E3 ubiquitin protein ligase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-55467774-2	chr12	55467674	55467874	+	587.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24873.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-64964167-2	chr12	64964067	64964267	+	542.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025707, intron 1 of 4)	intron (NM_025707, intron 1 of 4)	1369.0	NM_025707	66689.0	Mm.248678	NM_025707	ENSMUSG00000020948	Klhl28	2810440N09Rik|4122402F11Rik|4931401E10Rik|Btbd5	kelch-like 28	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117089822-2	chr10	117089722	117089922	+	715.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177798, intron 4 of 9)	intron (NM_177798, intron 4 of 9)	-25970.0	NM_007636	12461.0	Mm.247788	NM_007636	ENSMUSG00000034024	Cct2	Cctb	chaperonin containing Tcp1, subunit 2 (beta)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-25139005-4	chr17	25138892	25139092	+	960.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001317404, intron 1 of 24)	B4|SINE|B4	2361.0	NM_001317404	26373.0	Mm.270587	NM_011930	ENSMUSG00000036636	Clcn7	ClC-7|D17Wsu51e	chloride channel, voltage-sensitive 7	protein-coding	2.07448857190785	2.81445058412793	3.37426250166543	2.7521912858847	3.20715504030886	3.77820899267016	3.06747884630812	1.7924633751602	0.526790305817237	0.485777371184203	0.932338205097802
Merged-chr18-32830851-1	chr18	32830751	32830951	+	608.0	f1_c57bl6.idr	intron (NR_045381, intron 2 of 4)	intron (NR_045381, intron 2 of 4)	-6374.0	NM_001110016	225348.0	Mm.38816	NM_144863	ENSMUSG00000038299	Wdr36	5730444A13Rik|Ta-wdrp	WD repeat domain 36	protein-coding	2.76227840984416	2.21559537162272	3.44119768758627	3.56320061474815	1.57356116133011	2.7037584437022	1.42843260430977	2.93339591903585	-1.42800563288586	0.0942788319774605	0.475550312581511
Merged-chr5-81005678-2	chr5	81005578	81005778	+	588.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1C|Other|Other	-14893.0	NM_001347367	319387.0	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-52098668-4	chr11	52098572	52098772	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019411)	promoter-TSS (NM_019411)	-152.0	NM_019411	19052.0	Mm.260288	NM_019411	ENSMUSG00000020349	Ppp2ca	PP2A|R75353	protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-21913912-4	chr19	21913808	21914008	+	991.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	135568.0	NM_031997	83921.0	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127078080-2	chr7	127077980	127078180	+	631.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13356.0	NM_178901	101602.0	Mm.490357	NM_178901	ENSMUSG00000045165	AI467606	-	expressed sequence AI467606	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70647533-3	chr8	70647434	70647634	+	783.06665	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_023217, exon 5 of 5)	3' UTR (NM_023217, exon 5 of 5)	12204.0	NM_023217	66522.0	Mm.154906	NM_023217	ENSMUSG00000056204	Pgpep1	2810003H13Rik|Gm19458|PAP-I|PGP|PGP-I|PGPI|Pcp	pyroglutamyl-peptidase I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-113991066-2	chr9	113990966	113991166	+	983.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_178624, intron 5 of 14)	intron (NM_178624, intron 5 of 14)	35685.0	NM_178624	72179.0	Mm.386808	NM_178624	ENSMUSG00000032507	Fbxl2	2810423A21Rik|Fbl3	F-box and leucine-rich repeat protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-118169977-2	chr7	118169877	118170077	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001031814, intron 31 of 62)	RLTR13B1|LTR|ERVK	-40352.0	NM_019419	54208.0	Mm.29924	NM_019419	ENSMUSG00000030654	Arl6ip1	AIP-6|AL022945|ARMER|AU042858|Aip-1|Arl6ip|C85138|mKIAA0069	ADP-ribosylation factor-like 6 interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-97400064-4	chr7	97399959	97400159	+	937.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024220)	promoter-TSS (NM_024220)	56.0	NM_024220	68197.0	Mm.334031	NM_024220	ENSMUSG00000030647	Ndufc2	1810004I06Rik|2010300P09Rik|G1|R75094	NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 2	protein-coding	1.63743642563988	2.27614360276362	2.07262022473114	1.10852028717372	1.91532634270633	2.91719635940118	2.09025351576117	1.11282907299301	0.786733316784929	0.472844085554472	0.926125823511231
Merged-chr15-64061338-4	chr15	64061206	64061406	+	980.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144846)	promoter-TSS (NM_144846)	-858.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	3.2764156698987	4.45233739620545	3.55702416408758	3.08785426853772	2.58464570956739	3.78689864792808	2.96788321269989	4.13834738896648	-0.279227189147552	0.650236953621079	0.985422869512088
Merged-chr2-60903699-4	chr2	60903591	60903791	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	-22253.0	NM_001141931	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-122019838-1	chr14	122019738	122019938	+	542.0	f1_balb.idr	intron (NM_026861, intron 8 of 8)	MT2B|LTR|ERVL	-14836.0	NM_001037744	223262.0	Mm.297637	NM_001037744	ENSMUSG00000071229	Timm8a2	-	translocase of inner mitochondrial membrane 8A2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-44543606-2	chr12	44543506	44543706	+	551.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001146031, intron 7 of 27)	intron (NM_001146031, intron 7 of 27)	214721.0	NM_001146031	319504.0	Mm.208439	NM_176930	ENSMUSG00000020598	Nrcam	Bravo|C030017F07Rik|C130076O07Rik|mKIAA0343	neuronal cell adhesion molecule	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-106295409-5	chr9	106295187	106295387	+	794.133362	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027354, intron 7 of 10)	intron (NM_027354, intron 7 of 10)	14226.0	NM_027354	70235.0	Mm.23054	NM_027354	ENSMUSG00000023345	Poc1a	2510040D07Rik|Wdr51a|cha	POC1 centriolar protein A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167352174-2	chr2	167352074	167352274	+	975.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER12C|LTR|ERVK	-2996.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-54486278-3	chr11	54486175	54486375	+	637.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173753, intron 6 of 17)	intron (NM_173753, intron 6 of 17)	-36570.0	NM_001252494	192786.0	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-54927038-3	chr6	54926930	54927130	+	737.277771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001171007, intron 11 of 11)	MTB_Mm|LTR|ERVL-MaLR	44631.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98810659-4	chr11	98810549	98810749	+	890.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033551)	promoter-TSS (NR_033551)	-560.0	NR_033551	100037262.0	Mm.442062	NR_033551	ENSMUSG00000075576	Gm12359	-	predicted gene 12359	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-135609262-2	chr3	135609162	135609362	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008689, intron 12 of 24)	intron (NM_008689, intron 12 of 24)	82285.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-17902955-2	chr17	17902855	17903055	+	665.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15131.0	NM_008039	14289.0	Mm.378918	NM_008039	ENSMUSG00000052270	Fpr2	E330010I07Rik|Fpr-rs2	formyl peptide receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-162665298-4	chr1	162665196	162665396	+	944.616699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7077.0	NM_001177581	100038657.0	Mm.416999	NM_001177581	ENSMUSG00000091060	Myocos	7420461P10Rik	myocilin opposite strand	protein-coding	4.32773818240546	5.90478569166236	4.24636604843322	3.92815275785547	4.00649006230847	5.24374817799561	4.0027112152888	4.32263055996004	-0.437473095513159	0.384158225112982	0.875228269073884
Merged-chr18-53176292-4	chr18	53176185	53176385	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026386)	promoter-TSS (NM_026386)	-7.0	NM_001357463	67804.0	Mm.252171	NM_026386	ENSMUSG00000034484	Snx2	0610030A03Rik	sorting nexin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-65974848-4	chr3	65974732	65974932	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-16583.0	NM_001355432	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	2.19843069275824	2.7285391832505	3.18180707721517	2.771746491025	2.74162468407459	2.6205670098443	2.23981066831562	2.96045411672884	-0.188725255122571	0.796162586068751	0.998431161219273
Merged-chr5-69555389-2	chr5	69555289	69555489	+	631.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1535.0	NM_172711	231279.0	Mm.21105	NM_172711	ENSMUSG00000029208	Guf1	4631409J12|AA407526|EF-4	GUF1 homolog, GTPase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44848697-1	chr7	44848597	44848797	+	1000.0	f0_c57.idr	promoter-TSS (NM_001290695)	promoter-TSS (NM_001290695)	382.0	NM_001042655	233204.0	Mm.27567	NM_144924	ENSMUSG00000038520	Tbc1d17	BC017607	TBC1 domain family, member 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133087869-2	chr4	133087769	133087969	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42764.0	NM_153423	242687.0	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	2.52659810468911	2.82903964742202	2.12224471467822	1.69640240908421	2.85305772683252	2.50912285017655	2.65719580410127	2.57694931837704	0.620640936260305	0.436410424274754	0.908195930350688
Merged-chr12-86859478-4	chr12	86859383	86859583	+	866.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25331.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-150168942-4	chr5	150168837	150169037	+	900.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-90993.0	NM_172887	320365.0	Mm.216590	NM_172887	ENSMUSG00000056602	Fry	13CDNA73|9330186A19Rik|AF346502|AI462658|C87180|D930046M03|cg003|mKIAA4143	FRY microtubule binding protein	protein-coding	2.86388110274833	2.79315138584053	1.86149878486765	3.43030218312738	3.17094523291236	2.68195790878192	3.03632712447289	2.63633689395706	0.0783760144151593	0.914080676535749	0.998431161219273
Merged-chr17-5520153-4	chr17	5520058	5520258	+	982.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	27558.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-30705043-1	chr14	30704943	30705143	+	555.0	f1_balb.idr	Intergenic	B1_Mur2|SINE|Alu	-9806.0	NM_019460	54650.0	Mm.294662	NM_019460	ENSMUSG00000006527	Sfmbt1	4930442N21Rik|9330180L21Rik|AA536974|Sfmbt|Smr	Scm-like with four mbt domains 1	protein-coding	-1.58994551673671	-1.55912852307891	-1.56844783632235	-1.57610299769523	-1.18549093183599	-1.55710898902261	-1.56633814807757	-1.57473272746952	1.78703309985663	0.610309988231842	1
Merged-chr2-167996584-4	chr2	167996514	167996714	+	917.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080708, intron 4 of 21)	MLTR14|LTR|ERV1	13979.0	NM_001080708	69553.0	Mm.68454	NM_001080708	ENSMUSG00000074577	Ripor3	2310033K02Rik|Fam65c|Gm124	RIPOR family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-84099857-4	chr17	84099758	84099958	+	906.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21198.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-121171117-4	chr2	121170964	121171164	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290819)	promoter-TSS (NM_001290819)	61.0	NM_001290819	99334.0	Mm.188422	NM_178889	ENSMUSG00000050619	Zscan29	AW125441|Zfp690	zinc finger SCAN domains 29	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114989398-2	chr11	114989295	114989495	+	842.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_145437, intron 1 of 3)	ID_B1|SINE|B4	491.0	NM_145437	217305.0	Mm.275986	NM_145437	ENSMUSG00000034641	Cd300ld	4732429D16Rik|CLM5|Cd300ld1|LMIR4|MAIR-IV|clm-5	CD300 molecule like family member d	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-89179081-4	chr15	89178974	89179174	+	984.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138749, intron 1 of 37)	intron (NM_138749, intron 1 of 37)	1714.0	NM_001284506	140570.0	Mm.267514	NM_138749	ENSMUSG00000036606	Plxnb2	Debt|plexin-B2	plexin B2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-6605753-2	chr11	6605653	6605853	+	615.5	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001081652, exon 1 of 8)	5' UTR (NM_001081652, exon 1 of 8)	301.0	NM_001081652	192950.0	Mm.337771	NM_001081652	ENSMUSG00000041073	Nacad	D230024G13Rik|mKIAA0363	NAC alpha domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-25331558-2	chr10	25331445	25331645	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28253.0	NM_001358754	13822.0	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	0.549761663477689	0.203407723179088	0.639202794504835	0.80501251267703	0.558239776517764	0.204724908710942	0.198855707700967	0.19385323631663	-1.98280555163584	0.3228540964417	1
Merged-chr11-69235833-4	chr11	69235739	69235939	+	730.733337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008192, intron 2 of 18)	CpG	1183.0	NM_008192	14919.0	Mm.291816	NM_008192	ENSMUSG00000020890	Gucy2e	GC-E|GC1|ROS-GC1	guanylate cyclase 2e	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-94149280-3	chr11	94149134	94149334	+	870.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-62220.0	NM_009427	22057.0	Mm.259673	NM_009427	ENSMUSG00000037573	Tob1	Tob|Trob	transducer of ErbB-2.1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-91051669-4	chr1	91051585	91051785	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111312, intron 1 of 12)	intron (NM_001111312, intron 1 of 12)	-1759.0	NM_001111311	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-95242986-2	chr7	95242886	95243086	+	710.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	-928258.0	NM_001310762	23966.0	Mm.254610	NM_011858	ENSMUSG00000048078	Tenm4	Doc4|ELM2|Odz4|R75022|Ten-m4|l(7)-3Rn|l7Rn3|mKIAA1302	teneurin transmembrane protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-21383080-3	chr10	21382972	21383172	+	798.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178713, intron 3 of 6)	intron (NM_178713, intron 3 of 6)	5772.0	NM_178713	237320.0	Mm.90181	NM_178713	ENSMUSG00000037542	Aldh8a1	Raldh4	aldehyde dehydrogenase 8 family, member A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-96303323-4	chr11	96303206	96303406	+	928.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008268)	promoter-TSS (NM_008268)	-206.0	NM_008268	15413.0	Mm.207	NM_008268	ENSMUSG00000038700	Hoxb5	AI385717|Hox-2.1	homeobox B5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-95357928-4	chr10	95357841	95358041	+	958.05835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045337, intron 1 of 2)	ORR1F|LTR|ERVL-MaLR	21665.0	NR_045337	69629.0	Mm.250542	NR_045337	ENSMUSG00000100550	2310039L15Rik	A53T-syn|G2-3|PrPsynA53T|Tg(Prnp-SNCA*A53T)23Mkle	RIKEN cDNA 2310039L15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-43880402-3	chr5	43880306	43880506	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007646, intron 1 of 7)	L1MC5a|LINE|L1	11597.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	2.98742471798058	3.625519256444	3.24486893113656	4.13996818601449	3.10262786025194	3.47900500834223	2.64874145348878	3.57330168301422	-0.512188889024225	0.388055769248017	0.877827277965127
Merged-chr5-66091243-2	chr5	66091143	66091343	+	591.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_139065, intron 2 of 6)	B4A|SINE|B4	6936.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-40077798-4	chr10	40077703	40077903	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 2 of 5)	intron (NM_001114332, intron 2 of 5)	-52535.0	NM_144821	215929.0	Mm.55513	NM_144821	ENSMUSG00000038522	Mfsd4b1	AI317395|AI482555|Naglt1a	major facilitator superfamily domain containing 4B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-25833483-4	chr17	25833340	25833540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019719)	promoter-TSS (NM_019719)	-79.0	NM_019719	56424.0	Mm.277599	NM_019719	ENSMUSG00000039615	Stub1	0610033N24Rik|2210017D18Rik|2310040B03Rik|AW046544|Chip	STIP1 homology and U-Box containing protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-23533783-4	chr13	23533670	23533870	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175661)	promoter-TSS (NM_175661)	-141.0	NM_175661	319173.0	Mm.377878	NM_175661	ENSMUSG00000061991	Hist1h2af	H2a-221	histone cluster 1, H2af	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-27454918-4	chr7	27454778	27454978	+	947.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290525, intron 1 of 4)	L1MB8|LINE|L1	2460.0	NM_001290525	233016.0	Mm.24021	NM_144923	ENSMUSG00000040466	Blvrb	-	biliverdin reductase B (flavin reductase (NADPH))	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-104574764-4	chr9	104574658	104574858	+	971.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028719, intron 1 of 15)	intron (NM_028719, intron 1 of 15)	5275.0	NM_028719	74020.0	Mm.326240	NM_028719	ENSMUSG00000032564	Cpne4	3632411M23Rik|4933406O10Rik	copine IV	protein-coding	3.78877291571689	3.00504121462245	2.75497222921255	3.41355497773246	4.08527171757095	4.30043860066649	1.70125502475485	3.77960779136037	0.679075191760297	0.321711965177135	0.823903365381149
Merged-chr6-124703062-4	chr6	124703100	124703300	+	740.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149320, intron 9 of 11)	intron (NR_149320, intron 9 of 11)	8978.0	NM_013536	14791.0	Mm.6390	NM_013536	ENSMUSG00000004268	Emg1	C2f|Grcc2f	EMG1 N1-specific pseudouridine methyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-85914598-1	chr5	85914498	85914698	+	1000.0	f1_c57bl6.idr	Intergenic	Intergenic	150985.0	NM_001345902	12617.0	Mm.4649	NM_007683	ENSMUSG00000029253	Cenpc1	CENP-C|Cenpc	centromere protein C1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-62079612-4	chr15	62079534	62079734	+	937.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132746, intron 1 of 6)	intron (NR_132746, intron 1 of 6)	40377.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-136518700-2	chr4	136518600	136518800	+	812.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_024452, intron 1 of 4)	L2a|LINE|L2	48939.0	NM_024452	269593.0	Mm.485824	NM_024452	ENSMUSG00000001089	Luzp1	2700072H04Rik|AI266952|Luzp|mFLJ00226	leucine zipper protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-114083656-2	chr14	114083556	114083756	+	817.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3_Mus|LINE|L1	-748309.0	NR_045661	75822.0	Mm.410813	NR_045661	ENSMUSG00000115320	4930524C18Rik	-	RIKEN cDNA 4930524C18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-110813270-4	chr12	110813163	110813363	+	864.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011973, intron 7 of 11)	intron (NM_011973, intron 7 of 11)	27676.0	NM_011973	26448.0	Mm.140948	NM_011973	ENSMUSG00000056458	Mok	RAGE1|Rage|Stk30	MOK protein kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-26016525-4	chr15	26016431	26016631	+	826.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32165.0	NM_144523	52521.0	Mm.29145	NM_144523	ENSMUSG00000052253	Zfp622	1110033B05Rik|D15Ertd806e|ZPR9|Znf622	zinc finger protein 622	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-29998969-4	chr6	29998874	29999074	+	922.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	13645.0	NR_040263	76419.0	Mm.84522	NR_040263	ENSMUSG00000045709	Smkr-ps	1700023L04Rik	smal lysine rich protein 1, pseudogene	ncRNA	3.59209095358257	2.70355004882291	2.89053242337924	3.65721855602918	2.67898198674772	3.62275422526756	3.65347143991607	3.47611508836364	0.188144064564728	0.756389155213062	0.998431161219273
Merged-chr18-82530302-4	chr18	82530202	82530402	+	985.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025245, intron 3 of 3)	intron (NM_001025245, intron 3 of 3)	-24161.0	NM_001025258	17196.0	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-125123638-4	chr2	125123546	125123746	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162417)	promoter-TSS (NM_001162417)	14.0	NM_001162417	17876.0	Mm.18535	NM_010852	ENSMUSG00000027201	Myef2	9430071B01|mKIAA1341	myelin basic protein expression factor 2, repressor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-105181977-3	chr11	105181849	105182049	+	949.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027956)	promoter-TSS (NR_027956)	422.0	NM_001294329	24086.0	Mm.126976	NM_011903	ENSMUSG00000020694	Tlk2	4933403M19Rik|PKU-alpha|PKUalpha|Tlk	tousled-like kinase 2 (Arabidopsis)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-40144321-2	chr4	40144221	40144421	+	702.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_007386, intron 1 of 20)	intron (NM_007386, intron 1 of 20)	1056.0	NM_007386	11428.0	Mm.331547	NM_007386	ENSMUSG00000028405	Aco1	Aco-1|Irebp|Irp1	aconitase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-25068287-4	chr8	25068160	25068360	+	838.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031257, intron 3 of 11)	intron (NM_031257, intron 3 of 11)	-29298.0	NM_001081187	330723.0	Mm.334452	NM_001081187	ENSMUSG00000037406	Htra4	B430206E18Rik	HtrA serine peptidase 4	protein-coding	1.1736648385937	1.21833784596316	0.690154272854416	0.857595759839501	1.18482776493182	1.46894739641137	0.883919008452103	0.861195966359034	0.559294502809795	0.688725100267777	0.996533206832645
Merged-chr11-53470433-2	chr11	53470395	53470595	+	887.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9700.0	NM_183173	237761.0	Mm.145208	NM_183173	ENSMUSG00000044352	Sowaha	A830006N08Rik|Ankrd43	sosondowah ankyrin repeat domain family member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-49727868-1	chr2	49727768	49727968	+	603.0	f0_balb.idr	intron (NM_008449, intron 12 of 25)	intron (NM_008449, intron 12 of 25)	-59818.0	NM_027990	71897.0	Mm.41381	NM_027990	ENSMUSG00000026765	Lypd6b	2310010M24Rik|AW049525	LY6/PLAUR domain containing 6B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-25485755-4	chr14	25485654	25485854	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	26569.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70176745-2	chr14	70176645	70176845	+	751.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253736)	promoter-TSS (NM_001253736)	70.0	NM_001253736	213019.0	Mm.283968	NM_145978	ENSMUSG00000022090	Pdlim2	4732462F18Rik|Slim	PDZ and LIM domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-88113345-3	chr6	88113227	88113427	+	826.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9069.0	NR_105795	102465196.0		NR_105795	ENSMUSG00000099095	Mir6376	Gm27778|mmu-mir-6376	microRNA 6376	ncRNA	1.49161341648333	2.03027089529702	1.60863894904784	1.56569909345902	1.81654643247373	1.51439860929213	1.07693975737423	1.8105599001413	-0.309896139705202	0.781347227458967	0.998431161219273
Merged-chr1-172309231-1	chr1	172309131	172309331	+	545.0	f1_c57bl6.idr	Intergenic	Intergenic	-3136.0	NM_080419	140559.0	Mm.271717	NM_080419	ENSMUSG00000038034	Igsf8	ESTM34|EWI-2|KCT-4|PGRL	immunoglobulin superfamily, member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-45757627-4	chr16	45757529	45757729	+	978.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357078, intron 13 of 16)	intron (NM_001357078, intron 13 of 16)	-14674.0	NM_172511	213012.0	Mm.247453	NM_172511	ENSMUSG00000033157	Abhd10	-	abhydrolase domain containing 10	protein-coding	4.32312737262135	2.89645439413153	2.78626168266436	2.94013121703526	4.41423306518009	3.93765067129712	1.84613811651968	1.47673973931847	0.0907740378498	0.945459667167764	0.998431161219273
Merged-chr14-54392725-4	chr14	54392629	54392829	+	954.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011405, intron 4 of 11)	RSINE1|SINE|B4	16743.0	NM_001253680	20540.0	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	2.06946744515182	1.97141160895753	2.9762666125415	3.03428841865491	2.61308113953829	1.4785531361759	2.5262996951414	2.74589002979381	-0.365828042433185	0.673250656635733	0.99440487726309
Merged-chr6-72135068-2	chr6	72134968	72135168	+	568.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001035228, intron 3 of 6)	intron (NM_001035228, intron 3 of 6)	-11871.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-31076945-3	chr6	31076826	31077026	+	829.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13833.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-50862711-4	chr14	50862619	50862819	+	857.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009351, intron 6 of 54)	intron (NM_009351, intron 6 of 54)	7835.0	NM_009351	21745.0	Mm.318736	NM_009351	ENSMUSG00000006281	Tep1	Tp1	telomerase associated protein 1	protein-coding	2.77763007313178	3.61108078501449	2.90487878455296	2.92647194810062	2.59272713888232	3.02688711523604	3.30349022691766	2.94137601387654	-0.190766008345814	0.766866305402413	0.998431161219273
Merged-chr5-23615794-2	chr5	23615663	23615863	+	614.5	f0_balb.idr|f1_balb.idr	intron (NR_152854, intron 2 of 14)	intron (NR_152854, intron 2 of 14)	808.0	NM_001359175	20817.0	Mm.288728	NM_009274	ENSMUSG00000062604	Srpk2	AW226533|AW492537|AW547358|Wbp6|mSRPK2	serine/arginine-rich protein specific kinase 2	protein-coding	1.74208484141376	1.92805464048564	1.71522481886189	2.50190993659333	1.87476216796364	2.5154292760663	1.55129432286811	2.18699871438845	0.166845100256537	0.86238372816829	0.998431161219273
Merged-chr13-107904555-5	chr13	107904432	107904632	+	917.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14468.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	0.6310864142284	0.277050062619413	0.936341895634586	0.68881792438248	0.738078621119604	0.278516436249781	0.271977189939135	0.266392655506213	-1.60943962895531	0.404663846273463	1
Merged-chr7-141048434-4	chr7	141048332	141048532	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12842.0	NM_177897	330671.0	Mm.133741	NM_177897	ENSMUSG00000055629	B4galnt4	BC038881|Gm1095|beta4GalNAcT4	beta-1,4-N-acetyl-galactosaminyl transferase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-79295353-1	chr12	79295253	79295453	+	963.0	f1_c57bl6.idr	intron (NM_001008550, intron 2 of 41)	B1_Mm|SINE|Alu	929.0	NM_001008550	211978.0	Mm.297919	NM_001008550	ENSMUSG00000066440	Zfyve26	4930465A13|9330197E15Rik|A630028O16Rik|Gm893|mKIAA0321	zinc finger, FYVE domain containing 26	protein-coding	1.52399203786748	1.37580599573521	0.389701781745614	1.0347087137401	0.367069869380169	0.404118167935346	0.392323179053018	0.382065137804492	-4.72530453037855	0.00892154937152441	0.100288022510509
Merged-chr13-37845801-4	chr13	37845703	37845903	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039188, intron 1 of 9)	intron (NM_001039188, intron 1 of 9)	18410.0	NM_001039188	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-22692925-1	chr6	22692825	22693025	+	541.0	f1_c57bl6.idr	Intergenic	Intergenic	-182577.0	NM_001311064	19283.0	Mm.41639	NM_011219	ENSMUSG00000068748	Ptprz1	AI850339|DSD-1-PG|PTPbeta|PTPzeta|Ptprz|Ptpz|R-PTP-zeta|RPTPz|Rptpbeta	protein tyrosine phosphatase, receptor type Z, polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-117051998-2	chr13	117051898	117052098	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-26482.0	NM_001081009	52552.0	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44352236-2	chr7	44352136	44352336	+	657.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001034115, exon 24 of 25)	exon (NM_001034115, exon 24 of 25)	22794.0	NM_027049	69349.0	Mm.358922	NM_027049	ENSMUSG00000008028	1700008O03Rik	-	RIKEN cDNA 1700008O03 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-35200329-3	chr2	35200220	35200420	+	904.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026697, intron 1 of 7)	CpG	800.0	NM_026697	68365.0	Mm.198264	NM_026697	ENSMUSG00000026878	Rab14	0610030G24Rik|2810475J17Rik|A830021G03Rik|AI314285|AI649155|D030017L14Rik	RAB14, member RAS oncogene family	protein-coding	0.173676271034876	0.199385455865034	0.191062666403082	0.986398074711882	0.612080433214743	1.11948287945568	0.192906323866758	0.185713819021453	0.757987758867074	0.710404425641779	1
Merged-chr1-155972514-4	chr1	155972482	155972682	+	969.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039184, intron 1 of 37)	intron (NM_001039184, intron 1 of 37)	673.0	NM_001039184	74081.0	Mm.260247	NM_001039184	ENSMUSG00000033671	Cep350	4933409L06Rik|6430546F08Rik	centrosomal protein 350	protein-coding	1.59101283664749	1.60963191622342	2.37553630286395	1.67384638694837	1.28999622582864	2.29789559933202	1.37565095361296	2.04738955467428	-0.0869749748156915	0.934150946111179	0.998431161219273
Merged-chr1-151705274-2	chr1	151705174	151705374	+	889.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_022018, intron 10 of 13)	ORR1E|LTR|ERVL-MaLR	49453.0	NR_151474	102640772.0		NR_151473	ENSMUSG00000100594	2810414N06Rik	-	RIKEN cDNA 2810414N06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-49191864-4	chr13	49191730	49191930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013610, intron 1 of 3)	intron (NM_013610, intron 1 of 3)	4283.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-16129612-2	chr19	16129512	16129712	+	633.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3219.0	NM_008139	14682.0	Mm.439701	NM_008139	ENSMUSG00000024639	Gnaq	1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI	guanine nucleotide binding protein, alpha q polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6450817-2	chr19	6450717	6450917	+	750.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205234, intron 5 of 22)	intron (NM_001205234, intron 5 of 22)	32079.0	NM_001205234	18190.0	Mm.329616	NM_020253	ENSMUSG00000033768	Nrxn2	6430591O13Rik|mKIAA0921	neurexin II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70611397-4	chr8	70611312	70611512	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-3098.0	NM_133772	76900.0	Mm.6667	NM_133772	ENSMUSG00000070003	Ssbp4	1210002E11Rik|AW743380|Sspb4	single stranded DNA binding protein 4	protein-coding	2.33807561128698	2.39001854775986	1.63583823372993	2.3599665568511	3.13953586699707	2.53356374399259	2.32700991857705	1.60321248990404	0.687027320465774	0.438799178285011	0.909130714404946
Merged-chr10-94336340-2	chr10	94336271	94336471	+	718.666626	f0_balb.idr|f1_balb.idr	intron (NM_001359762, intron 1 of 4)	intron (NM_001359762, intron 1 of 4)	24422.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	2.020689570991	1.80436645345685	2.18803321361868	2.12722278096609	1.4663742557814	2.50778738269269	2.60593220872863	2.01429053031322	0.461528970872923	0.617280553100211	0.977517868708383
Merged-chr4-150075448-2	chr4	150075348	150075548	+	946.7000119999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6994.0	NR_029751	723848.0		NR_029751	ENSMUSG00000065493	Mir34a	Mirn34a|mir-34a|mmu-mir-34a	microRNA 34a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-45081497-3	chr19	45081387	45081587	+	859.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5400.0	NM_001362397	107250.0	Mm.24417	NM_178929	ENSMUSG00000025213	Kazald1	AI842353|Bono1|IGFBP-rP10	Kazal-type serine peptidase inhibitor domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-90279234-4	chr16	90279129	90279329	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346799, intron 1 of 19)	intron (NM_001346799, intron 1 of 19)	5257.0	NM_001346799	224432.0	Mm.439811	NM_178923	ENSMUSG00000022983	Scaf4	AA517739|Sfrs15|Sra4|Srsf15	SR-related CTD-associated factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-41001083-4	chr13	41000982	41001182	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_155347)	promoter-TSS (NR_155347)	64.0	NR_155347	102633880.0	Mm.314757	NR_155347		A730081D07Rik	-	RIKEN cDNA A730081D07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-79877772-2	chr11	79877672	79877872	+	635.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	84615.0	NM_144826	216987.0	Mm.274961	NM_144826	ENSMUSG00000035575	Utp6	4732497O03Rik|HCA66	UTP6 small subunit processome component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-66990110-2	chr9	66990010	66990210	+	585.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14626.0	NM_030717	80907.0	Mm.157882	NM_030717	ENSMUSG00000032370	Lactb	LACT-1|Lact1|Mrpl56	lactamase, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129504479-3	chr2	129504373	129504573	+	997.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177653, intron 1 of 6)	RLTR18-int|LTR|ERVK	32129.0	NM_177653	228592.0	Mm.452175	NM_177653	ENSMUSG00000043727	F830045P16Rik	Sirpb3	RIKEN cDNA F830045P16 gene	protein-coding	-0.0547824669930209	-0.0306157664491186	1.17040531089863	-0.0445134035617172	0.273686172655424	-0.0288714094207533	0.3560544948285	-0.043443859993675	-1.45060309175468	0.498827205414197	1
Merged-chr15-64260302-4	chr15	64260252	64260452	+	764.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 3 of 28)	RMER1B|Other|Other	52321.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52017226-2	chr13	52017126	52017326	+	654.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-79515.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-103785323-4	chr14	103785264	103785464	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58337.0	NM_007904	13618.0	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-73384812-3	chr14	73384733	73384933	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008410, intron 1 of 5)	CpG	456.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-57472398-4	chr1	57472312	57472512	+	991.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	-65738.0	NM_001302963	68736.0	Mm.288490	NM_001037742	ENSMUSG00000048495	Tyw5	1110034B05Rik	tRNA-yW synthesizing protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-130009241-3	chr7	130009147	130009347	+	836.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47082.0	NR_046077	100043150.0	Mm.334264	NR_046077	ENSMUSG00000108504	Gm4265	-	predicted gene 4265	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119266733-2	chr11	119266644	119266844	+	632.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-1219.0	NM_001159324	14387.0	Mm.4793	NM_008064	ENSMUSG00000025579	Gaa	E430018M07Rik	glucosidase, alpha, acid	protein-coding	3.3533563058173	2.15285302538317	2.99987562913212	2.61495888821391	2.60814741972732	2.52680665469992	3.11043306899666	2.93210961411768	-0.100326827410341	0.888114378097372	0.998431161219273
Merged-chr11-117878029-1	chr11	117877929	117878129	+	794.5	f0_balb.idr	Intergenic	Intergenic	-4503.0	NM_027919	71776.0	Mm.3200	NM_027919	ENSMUSG00000017713	Tha1	1300017K07Rik|GLY1	threonine aldolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166903915-2	chr2	166903815	166904015	+	861.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-2181.0	NM_023565	110750.0	Mm.22417	NM_023565	ENSMUSG00000002718	Cse1l	2610100P18Rik|AA407533|Capts|Cas|Xpo2	chromosome segregation 1-like (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-16210744-3	chr12	16210641	16210841	+	914.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4|LINE|L1	379029.0	NM_015763	14245.0	Mm.153625	NM_015763	ENSMUSG00000020593	Lpin1	Lipin1|fld	lipin 1	protein-coding	1.18788678066778	1.46437673838431	1.71042649482236	1.31367750751416	4.83025012307392	5.04742144175348	4.58862646251996	4.53248871579104	7.01874231371555	1.26069095154928e-10	2.66925353588617e-08
Merged-chr17-80175187-4	chr17	80175084	80175284	+	955.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176963, intron 4 of 6)	intron (NM_176963, intron 4 of 6)	32121.0	NM_001195486	225027.0	Mm.292016	NM_146083	ENSMUSG00000024097	Srsf7	35kDa|9430065L19Rik|9G8|NX-96|Sfrs7	serine/arginine-rich splicing factor 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-146642525-4	chr6	146642437	146642637	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025315)	promoter-TSS (NM_025315)	-42.0	NM_025315	108098.0	Mm.26212	NM_025315	ENSMUSG00000030291	Med21	0610007L03Rik|AI449604|D19234|D6Ertd782e|Srb7|Surb7	mediator complex subunit 21	protein-coding	7.10975369946888	7.65924383833984	6.87525890718914	7.45802296195297	7.17288713784836	7.58464801861918	6.93835880470051	7.36555238498872	-0.0226892162242243	0.907463186648176	0.998431161219273
Merged-chr17-49475642-1	chr17	49475542	49475742	+	596.0	f1_c57bl6.idr	intron (NM_001008231, intron 15 of 25)	intron (NM_001008231, intron 15 of 25)	47278.0	NM_020042	56738.0	Mm.22256	NM_020042	ENSMUSG00000064120	Mocs1	3110045D15Rik|AI043170|AW536397	molybdenum cofactor synthesis 1	protein-coding	-1.27462982598064	-1.24684119600598	-1.2572181089565	-0.8402905472071	-1.27418953994324	-1.24459247568128	-1.09159278932446	-1.2642162392515	-1.22395137564734	0.71640787363208	1
Merged-chr17-32528925-4	chr17	32528839	32529039	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001101445)	TTS (NM_001101445)	-7618.0	NM_001356302	70101.0	Mm.30504	NM_024442	ENSMUSG00000048440	Cyp4f16	2310021J05Rik|AI746515	cytochrome P450, family 4, subfamily f, polypeptide 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97119915-2	chr11	97119815	97120015	+	572.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4584.0	NM_019507	57765.0	Mm.94519	NM_019507	ENSMUSG00000001444	Tbx21	TBT1|Tbet|Tblym	T-box 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-163788649-3	chr2	163788548	163788748	+	828.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32186.0	NM_016873	22403.0	Mm.13828	NM_016873	ENSMUSG00000027656	Wisp2	Ccn5|Crgr4|Ctgfl|Rcop1	WNT1 inducible signaling pathway protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-148536810-4	chr2	148536703	148536903	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-93268.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	3.95085275404464	2.6354002240761	4.67744686514179	3.87604299745145	3.44552298419159	3.93959468809081	3.03279865277555	4.06682989048857	-0.410694453015377	0.471480284485686	0.926125823511231
Merged-chr19-21269655-2	chr19	21269555	21269755	+	809.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-2623.0	NM_009551	22682.0	Mm.292405	NM_009551	ENSMUSG00000024750	Zfand5	2310057A04Rik|5830475F03Rik|AA415485|Za20d2|Zfp216	zinc finger, AN1-type domain 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-120085221-2	chr2	120085121	120085321	+	777.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51788.0	NM_145378	211429.0	Mm.41467	NM_145378	ENSMUSG00000098488	Pla2g4b	A030011C02Rik|Gm1013|cPLA2-beta	phospholipase A2, group IVB (cytosolic)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-114843793-3	chr9	114843682	114843882	+	860.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027294, exon 1 of 4)	exon (NM_027294, exon 1 of 4)	370.0	NM_027294	70031.0	Mm.150064	NM_027294	ENSMUSG00000041012	Cmtm8	2700018N07Rik|AA408515|Cklfsf8	CKLF-like MARVEL transmembrane domain containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-122747693-4	chr10	122747582	122747782	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110218, intron 1 of 9)	intron (NM_001110218, intron 1 of 9)	68367.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-37540585-2	chr1	37540485	37540685	+	979.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173870, intron 1 of 15)	CpG	431.0	NM_173870	269181.0	Mm.25861	NM_173870	ENSMUSG00000026110	Mgat4a	9530018I07Rik|GnT-IVa|glcNAc-T-IVa	mannoside acetylglucosaminyltransferase 4, isoenzyme A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-28103838-3	chr3	28103761	28103961	+	661.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008875, intron 20 of 25)	RSINE1|SINE|B4	119690.0	NM_008875	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-145767655-2	chr6	145767555	145767755	+	595.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40728.0	NM_027760	71323.0	Mm.158669	NM_027760	ENSMUSG00000030259	Rassf8	5133400D11Rik|AA815821|AW123240|Hoj1|mHoj-1	Ras association (RalGDS/AF-6) domain family (N-terminal) member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-121734264-3	chr7	121734187	121734387	+	758.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011326)	promoter-TSS (NM_011326)	-192.0	NM_011326	20278.0	Mm.35247	NM_011326	ENSMUSG00000000216	Scnn1g	SCNEG	sodium channel, nonvoltage-gated 1 gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-132786185-1	chr7	132786085	132786285	+	651.0	f0_balb.idr	intron (NM_212473, intron 1 of 4)	intron (NM_212473, intron 1 of 4)	750.0	NM_175268	77938.0	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81857882-3	chr15	81857778	81857978	+	998.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020507, intron 1 of 1)	CpG	448.0	NM_020507	57259.0	Mm.323595	NM_020507	ENSMUSG00000048546	Tob2	2900090N22Rik|4930545K18Rik|AV071822|mKIAA1663	transducer of ERBB2, 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80999995-4	chr10	80999872	81000072	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010319, intron 1 of 3)	intron (NM_010319, intron 1 of 3)	1393.0	NM_001038655	14708.0	Mm.222496	NM_010319	ENSMUSG00000048240	Gng7	AI840417	guanine nucleotide binding protein (G protein), gamma 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-50596933-4	chr6	50596822	50597022	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027564)	promoter-TSS (NM_027564)	-332.0	NM_027564	70821.0	Mm.157323	NM_027564	ENSMUSG00000029828	4921507P07Rik	TISP74	RIKEN cDNA 4921507P07 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-48889221-1	chr15	48889121	48889321	+	565.0	f1_c57bl6.idr	Intergenic	Intergenic	-97232.0	NM_001081391	239420.0	Mm.309363	NM_001081391	ENSMUSG00000022311	Csmd3	4930500N14Rik|mKIAA1894	CUB and Sushi multiple domains 3	protein-coding	-0.568756431611282	-0.559266144638208	-0.258084734224893	-0.56479624214245	-0.212695211320867	-0.220643720787426	-0.561706758394884	-0.564377628344242	1.20549590424548	0.654892338145922	1
Merged-chr4-147437273-2	chr4	147437173	147437373	+	986.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039209, intron 1 of 2)	Lx3_Mus|LINE|L1	-116004.0	NM_001014397	433804.0	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154	zinc finger protein 985	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-51236620-2	chr3	51236520	51236720	+	614.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009834, intron 1 of 2)	intron (NM_009834, intron 1 of 2)	12173.0	NM_009834	12457.0	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124479065-2	chr6	124478965	124479165	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14048.0	NM_181344	232371.0	Mm.132974	NM_181344	ENSMUSG00000038527	C1rl	C1r-LP|C1rl1|C1rlp	complement component 1, r subcomponent-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-102439093-2	chr11	102438993	102439193	+	632.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_199200, intron 7 of 7)	intron (NM_199200, intron 7 of 7)	8570.0	NM_199200	217219.0	Mm.259924	NM_199200	ENSMUSG00000034685	Fam171a2	-	family with sequence similarity 171, member A2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78574442-4	chr15	78574330	78574530	+	926.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_155437)	TTS (NR_155437)	-1647.0	NM_009008	19354.0	Mm.1972	NM_009008	ENSMUSG00000033220	Rac2	AI323801|AI452260	Rac family small GTPase 2	protein-coding	1.8997080527718	2.81435249865358	1.25159284561108	2.46405733530215	1.60898882499925	2.83583357064153	1.52626495012014	2.47740012330796	-0.0031502918848983	0.997491838186233	0.999268611847349
Merged-chr15-99223585-2	chr15	99223485	99223685	+	552.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1391.0	NM_010601	16512.0	Mm.374793	NM_010601	ENSMUSG00000037579	Kcnh3	AU019351|C030044P22Rik|Elk2|Kv12.2|Melk2	potassium voltage-gated channel, subfamily H (eag-related), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-62430634-4	chr10	62430539	62430739	+	977.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359806, intron 13 of 14)	intron (NM_001359806, intron 13 of 14)	-8182.0	NM_145419	216019.0	Mm.213213	NM_145419	ENSMUSG00000020080	Hkdc1	BC016235	hexokinase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55561421-2	chr14	55561321	55561521	+	989.6666869999999	f1_balb.idr|f1_c57bl6.idr	exon (NM_133734, exon 2 of 15)	exon (NM_133734, exon 2 of 15)	498.0	NM_001199009	28199.0	Mm.11535	NM_133734	ENSMUSG00000022214	Dcaf11	0710008A13Rik|C76035|D14Ucla1|Dacf11|GLO14|Wdr23	DDB1 and CUL4 associated factor 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-113698069-4	chr6	113697876	113698076	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001033463, exon 2 of 8)	exon (NM_001033463, exon 2 of 8)	926.0	NM_001033463	381801.0	Mm.333322	NM_001033463	ENSMUSG00000056952	Tatdn2	AI646012|mKIAA0218	TatD DNase domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-145187626-4	chr6	145187478	145187678	+	961.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177222, intron 9 of 15)	MTEa|LTR|ERVL-MaLR	23392.0	NM_177222	320662.0	Mm.207779	NM_177222	ENSMUSG00000043541	Casc1	A230084G12Rik|Las1	cancer susceptibility candidate 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-41146516-2	chr13	41146416	41146616	+	746.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001324525, intron 14 of 27)	intron (NM_001324525, intron 14 of 27)	28505.0	NM_001324525	637277.0		NM_001324525	ENSMUSG00000038651	Sycp2l	EG621792|Gm268|Gm40956	synaptonemal complex protein 2-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-21423156-4	chr16	21423056	21423256	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285894)	promoter-TSS (NM_001285894)	38.0	NM_001285894	209018.0	Mm.235683	NM_145948	ENSMUSG00000033653	Vps8	AI315068|AU040738|mKIAA0804	VPS8 CORVET complex subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-8303245-2	chr17	8303145	8303345	+	760.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_073374, intron 1 of 4)	intron (NR_073374, intron 1 of 4)	-7843.0	NM_001357890	106489.0	Mm.311080	NM_134114	ENSMUSG00000073468	Sft2d1	5630401J11Rik|AA409698	SFT2 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-13576042-4	chr2	13575952	13576152	+	989.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011701, intron 2 of 8)	intron (NM_011701, intron 2 of 8)	1741.0	NM_011701	22352.0	Mm.268000	NM_011701	ENSMUSG00000026728	Vim	-	vimentin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-51612683-6	chr6	51612559	51612759	+	802.227783	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	67366.0	NM_001361577	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-54846630-4	chr18	54846522	54846722	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	143558.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-88315089-1	chr7	88314989	88315189	+	1000.0	f0_balb.idr	3' UTR (NM_009982, exon 7 of 7)	3' UTR (NM_009982, exon 7 of 7)	37004.0	NM_001311790	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	3.19916470792074	2.68116219716278	1.98740315716177	2.62667198008327	3.22430894027363	2.70094627186391	2.00233931663044	2.27367005142474	-0.10642579056067	0.893432295772809	0.998431161219273
Merged-chr6-35598224-2	chr6	35598124	35598324	+	714.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-58336.0	NM_008098	14489.0	Mm.182746	NM_008098	ENSMUSG00000029840	Mtpn	5033418D15Rik|Gcdp|V1	myotrophin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-83315525-4	chr4	83315384	83315584	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027238, intron 1 of 19)	intron (NM_027238, intron 1 of 19)	8705.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-121475927-3	chr11	121475819	121476019	+	695.255554	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029878, intron 7 of 38)	intron (NM_029878, intron 7 of 38)	23970.0	NM_029878	108903.0	Mm.23686	NM_029878	ENSMUSG00000039230	Tbcd	2310057L06Rik|A030005L14Rik|mKIAA0988	tubulin-specific chaperone d	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-137287603-2	chr5	137287503	137287703	+	807.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290010)	promoter-TSS (NM_001290010)	-651.0	NM_009599	11423.0	Mm.255464	NM_009599	ENSMUSG00000023328	Ache	-	acetylcholinesterase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-88117209-3	chr7	88117123	88117323	+	957.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001143834, intron 10 of 10)	intron (NM_001143834, intron 10 of 10)	-160862.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-82871251-4	chr11	82871138	82871338	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164571)	promoter-TSS (NM_001164571)	-28.0	NM_001164571	67338.0	Mm.341608	NM_026097	ENSMUSG00000020696	Rffl	1700051E09Rik|4930516L10Rik|BG080975|Carp2	ring finger and FYVE like domain containing protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-95192214-4	chr4	95192111	95192311	+	903.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB3|LINE|L1	-139989.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-79685621-2	chr15	79685521	79685721	+	981.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_028792, intron 1 of 3)	intron (NM_028792, intron 1 of 3)	2251.0	NM_028792	74158.0	Mm.323393	NM_028792	ENSMUSG00000022426	Josd1	1300006C06Rik|mKIAA0063	Josephin domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99104527-1	chr7	99104427	99104627	+	546.0	f1_c57bl6.idr	intron (NM_178635, intron 3 of 14)	intron (NM_178635, intron 3 of 14)	36617.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	2.22108366529408	1.20878119504267	1.18541992803105	1.97098288955927	2.078024369099	2.1167011034091	1.92031440799236	2.08842727826213	0.836866626709004	0.438368547042288	0.908698311577985
Merged-chr6-89297454-4	chr6	89297333	89297533	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11708.0	NR_131021	75131.0	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	Gm44205	RIKEN cDNA 4930512J16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-54681167-2	chr13	54681067	54681267	+	556.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_027395, exon 11 of 11)	non-coding (NR_027395, exon 11 of 11)	6641.0	NM_001146025	105239.0	Mm.25366	NM_134064	ENSMUSG00000034928	Rnf44	AI854545|mKIAA1100	ring finger protein 44	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-5932416-2	chr18	5932316	5932516	+	641.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	203682.0	NM_029277	75415.0	Mm.239675	NM_029277	ENSMUSG00000041225	Arhgap12	2810011M08Rik	Rho GTPase activating protein 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55558162-2	chr14	55558062	55558262	+	578.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-1867.0	NR_037572	28199.0	Mm.11535	NM_133734	ENSMUSG00000022214	Dcaf11	0710008A13Rik|C76035|D14Ucla1|Dacf11|GLO14|Wdr23	DDB1 and CUL4 associated factor 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-23670385-2	chr17	23670285	23670485	+	565.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357380, intron 5 of 13)	intron (NM_001357380, intron 5 of 13)	-3223.0	NM_181821	353502.0	Mm.359030	NM_181821	ENSMUSG00000023904	Hcfc1r1	HPIP	host cell factor C1 regulator 1 (XPO1-dependent)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75644921-4	chr11	75644829	75645029	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008916, intron 7 of 11)	MIRc|SINE|MIR	-6580.0	NM_008659	17913.0	Mm.234502	NM_008659	ENSMUSG00000017774	Myo1c	C80397|MMIb|MYO1E|NMI|mm1beta|myr2	myosin IC	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-134955335-2	chr1	134955235	134955435	+	979.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081307, intron 1 of 23)	intron (NM_001081307, intron 1 of 23)	605.0	NM_001081307	329251.0	Mm.188709	NM_001081307	ENSMUSG00000073557	Ppp1r12b	1810037O03Rik|9530009M10Rik|AI132431|Mypt2	protein phosphatase 1, regulatory (inhibitor) subunit 12B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45013486-2	chr7	45013386	45013586	+	832.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_106021)	promoter-TSS (NR_106021)	-999.0	NR_106021	102466218.0		NR_106021	ENSMUSG00000098839	Mir7054	Gm27557|mmu-mir-7054	microRNA 7054	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-157008277-4	chr1	157008137	157008337	+	967.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68611.0	NM_001357391	78255.0	Mm.28376	NM_023884	ENSMUSG00000026594	Ralgps2	1810020P17Rik|2210408F11Rik|4921528G01Rik|9130014M22Rik|AU043409|AW046161	Ral GEF with PH domain and SH3 binding motif 2	protein-coding	2.58967936760427	3.42932467761389	2.69342133050016	2.35948992517525	2.61113055197246	3.21891329594831	2.82836822886394	2.6314748459046	0.0169714641895393	0.980757862962489	0.998431161219273
Merged-chr4-106988154-4	chr4	106988042	106988242	+	771.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355532, intron 1 of 14)	intron (NM_001355532, intron 1 of 14)	64957.0	NM_001355532	72475.0	Mm.195635	NM_023672	ENSMUSG00000061887	Ssbp3	2610021L12Rik|2610200M23Rik|5730488C10Rik|AI854733|AW551939|LAST|SSDP1	single-stranded DNA binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-51693563-2	chr12	51693463	51693663	+	691.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001329698, intron 1 of 5)	intron (NM_001329698, intron 1 of 5)	-1649.0	NM_052973	94186.0	Mm.65979	NM_052973	ENSMUSG00000020954	Strn3	Gs2na|SG2NA	striatin, calmodulin binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35243760-2	chr17	35243651	35243851	+	654.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_105941)	promoter-TSS (NR_105941)	-324.0	NR_105941	102465589.0		NR_105941	ENSMUSG00000098499	Mir6975	Gm27693|mmu-mir-6975	microRNA 6975	ncRNA	2.23973087990022	1.26749080352414	2.23580738577041	2.27174296995659	1.85423607917209	1.27353210187421	2.54082053888013	2.18288012411754	-0.0471396632599351	0.963976903244489	0.998431161219273
Merged-chr17-80139067-4	chr17	80139018	80139218	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176963, intron 2 of 6)	intron (NM_176963, intron 2 of 6)	11647.0	NM_176963	319625.0	Mm.29098	NM_176963	ENSMUSG00000035473	Galm	A530057M15Rik|AU015645|AU020959	galactose mutarotase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-146732357-2	chr5	146732257	146732457	+	867.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M3|LINE|L1	62599.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-110436862-2	chr11	110436762	110436962	+	912.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356352, intron 1 of 11)	intron (NM_001356352, intron 1 of 11)	37760.0	NM_001356353	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-84430977-2	chr17	84430877	84431077	+	613.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_183021, intron 17 of 37)	ID_B1|SINE|B4	35231.0	NM_183021	240174.0	Mm.246767	NM_177826	ENSMUSG00000024251	Thada	6530405K19|A930021O22|AU019899|BC052885|GITA	thyroid adenoma associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-119548845-2	chr1	119548745	119548945	+	846.833374	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_145506, exon 25 of 25)	3' UTR (NM_145506, exon 25 of 25)	-12680.0	NR_126486	320069.0	Mm.406320	NR_126486	ENSMUSG00000101731	3830432H09Rik	-	RIKEN cDNA 3830432H09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-78228418-1	chr12	78228318	78228518	+	568.0	f1_c57bl6.idr	intron (NM_172952, intron 1 of 23)	intron (NM_172952, intron 1 of 23)	1763.0	NM_145965	268566.0	Mm.341742	NM_145965	ENSMUSG00000047454	Gphn	5730552E08Rik|AI662856|BC027112|C230040D23|GPH|GPHRYN|geph	gephyrin	protein-coding	0.320638699828904	0.106727873560433	0.102690367886526	0.555945733561318	0.326477455143428	0.10764469273409	0.257147652492731	0.470106661742399	0.0566416513415769	0.976892487313824	1
Merged-chr7-126649503-4	chr7	126649369	126649569	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_029339, exon 1 of 10)	5' UTR (NM_029339, exon 1 of 10)	160.0	NM_029339	75565.0	Mm.45686	NM_029339	ENSMUSG00000030714	Sgf29	1700023O11Rik|9530025I05Rik|Ccdc101	SAGA complex associated factor 29	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-53721814-3	chr6	53721719	53721919	+	623.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	99006.0	NM_025817	66873.0	Mm.422727	NM_025817	ENSMUSG00000043496	Tril	1200009O22Rik|AI316813|mKIAA0644	TLR4 interactor with leucine-rich repeats	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55577994-2	chr14	55577898	55578098	+	737.583374	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_011189)	promoter-TSS (NM_011189)	-496.0	NM_011189	19186.0	Mm.830	NM_011189	ENSMUSG00000022216	Psme1	AW413925|PA28a	proteasome (prosome, macropain) activator subunit 1 (PA28 alpha)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80880482-4	chr10	80880355	80880555	+	850.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081688, intron 1 of 17)	intron (NM_001081688, intron 1 of 17)	639.0	NM_001081688	432478.0	Mm.235302	NM_001081688	ENSMUSG00000059406	Tmprss9	Serase-1B	transmembrane protease, serine 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-155627261-3	chr2	155627184	155627384	+	941.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085378, intron 24 of 41)	intron (NM_001085378, intron 24 of 41)	4404.0	NR_030757	735275.0		NR_030757	ENSMUSG00000076312	Mir499	Mirn499|mir-499|mmu-mir-499	microRNA 499	ncRNA	5.01475049828388	4.44828112625617	2.96696828288251	4.29595540730063	5.02479462093912	4.95217189331011	2.99454558251082	4.03042798745801	0.132556919877794	0.809259843346307	0.998431161219273
Merged-chr7-105762242-4	chr7	105762179	105762379	+	883.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001162943, exon 10 of 21)	exon (NM_001162943, exon 10 of 21)	-10044.0	NM_009906	12751.0	Mm.20837	NM_009906	ENSMUSG00000030894	Tpp1	Cln2|LPIC|TPP-1|TPP-I	tripeptidyl peptidase I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116015575-2	chr11	116015475	116015675	+	924.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-2856.0	NM_016905	14635.0	Mm.2820	NM_016905	ENSMUSG00000020766	Galk1	AA409894|GALK|Gk|Glk|Glk1	galactokinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-152265950-3	chr3	152265853	152266053	+	938.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357206)	promoter-TSS (NM_001357206)	-158.0	NM_001357206	68810.0	Mm.200188	NM_199465	ENSMUSG00000039103	Nexn	1110046H09Rik|AA553326|NELIN	nexilin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-144242274-3	chr3	144242180	144242380	+	598.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37025.0	NM_010723	16911.0	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83463033-3	chr11	83462920	83463120	+	858.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172797)	promoter-TSS (NM_172797)	20.0	NM_172797	118453.0	Mm.264648	NM_080453	ENSMUSG00000020682	Mmp28	D130023P12	matrix metallopeptidase 28 (epilysin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-87873219-4	chr1	87873130	87873330	+	921.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177646, intron 1 of 29)	intron (NM_177646, intron 1 of 29)	-18931.0	NR_136921	100503175.0	Mm.426422	NR_136921	ENSMUSG00000101942	Gm19582	-	predicted gene, 19582	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80767949-2	chr7	80767849	80768049	+	571.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016721, intron 3 of 37)	intron (NM_016721, intron 3 of 37)	35382.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115488315-4	chr5	115488207	115488407	+	985.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3823.0	NM_133760	75387.0	Mm.332616	NM_133760	ENSMUSG00000029524	Sirt4	4930596O17Rik	sirtuin 4	protein-coding	3.70039806084372	3.39001462059275	4.2247123475897	4.11502073393645	3.89761765061048	2.68685055429264	4.30548222437201	3.78399284263999	-0.148777350125777	0.778618753735899	0.998431161219273
Merged-chr7-80821140-2	chr7	80821040	80821240	+	668.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17809.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89246420-4	chr3	89246304	89246504	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025327)	promoter-TSS (NM_025327)	-34.0	NM_025327	66059.0	Mm.177991	NM_025327	ENSMUSG00000042747	Krtcap2	0610010I12Rik|Kcp2	keratinocyte associated protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-24862744-3	chr13	24862666	24862866	+	761.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081051, intron 5 of 20)	intron (NM_001081051, intron 5 of 20)	17635.0	NR_131787	210108.0	Mm.261514	NM_001081051	ENSMUSG00000006711	D130043K22Rik	4930451E12Rik|Kiaa0319	RIKEN cDNA D130043K22 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-87474562-1	chr6	87474462	87474662	+	624.0	f1_balb.idr	intron (NM_001037727, intron 5 of 10)	(TC)n|Simple_repeat|Simple_repeat	21765.0	NR_104483	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	0.646758777643373	0.160334455341593	0.1531722105813	0.147613621519037	0.13970718172949	0.938498762700488	0.154755930687401	0.828135139525319	1.71429462485604	0.415940997796141	1
Merged-chr9-108844646-2	chr9	108844546	108844746	+	823.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359573, intron 28 of 35)	intron (NM_001359573, intron 28 of 35)	-9397.0	NM_134420	171429.0	Mm.45201	NM_134420	ENSMUSG00000023259	Slc26a6	B930010B04Rik|CFEX|Pat-1|Pat1	solute carrier family 26, member 6	protein-coding	-0.547241530435804	-0.789502016725036	-0.792258340872413	-0.794374431096617	-0.342517717013656	-0.787672340984679	-0.791651726643345	-0.63681364617414	1.24050698097333	0.663942364223857	1
Merged-chr2-27412585-2	chr2	27412485	27412685	+	637.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009500, intron 1 of 27)	intron (NM_009500, intron 1 of 27)	15023.0	NR_133905	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91008570-2	chr16	91008470	91008670	+	827.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001045515, intron 2 of 32)	B4A|SINE|B4	2525.0	NM_001045515	104015.0	Mm.187079	NM_001045515	ENSMUSG00000022973	Synj1	A930006D20Rik|AA675315|mKIAA0910	synaptojanin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-74949015-3	chr1	74948900	74949100	+	901.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010544, intron 1 of 2)	intron (NM_010544, intron 1 of 2)	2672.0	NM_001313683	16147.0	Mm.439736	NM_010544	ENSMUSG00000006538	Ihh	HHG-2	Indian hedgehog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-87205681-3	chr6	87205603	87205803	+	941.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054041, intron 13 of 17)	intron (NM_054041, intron 13 of 17)	100957.0	NM_001167937	52372.0	Mm.282851	NM_001167937	ENSMUSG00000090891	D6Ertd527e	AU043841	DNA segment, Chr 6, ERATO Doi 527, expressed	protein-coding	1.20484389902804	0.852259517278136	2.16615184270497	0.801163524266235	1.66575720006707	1.40109426946852	2.94456364984217	0.805220745495184	1.43976125033523	0.268019592623192	0.770904364462136
Merged-chr11-21011014-1	chr11	21010914	21011114	+	704.0	f0_balb.idr	Intergenic	Intergenic	-80310.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-39379469-4	chr6	39379355	39379555	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1748.0	NR_155077	72144.0	Mm.482167	NM_028123	ENSMUSG00000029924	Slc37a3	2610507O21Rik|AU044904	solute carrier family 37 (glycerol-3-phosphate transporter), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-29696853-4	chr12	29696773	29696973	+	889.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361657, intron 3 of 24)	intron (NM_001361657, intron 3 of 24)	-10428.0	NR_046080	328075.0	Mm.447832	NR_046080	ENSMUSG00000112663	C630031E19Rik	C630031E19	RIKEN cDNA C630031E19 gene	ncRNA	3.89908621998615	3.99273536179798	2.65258723323674	3.30604567811654	3.70687811183459	1.65803987572377	1.88869729124776	3.40024076918932	-0.922628984072656	0.228779514422481	0.722016539443097
Merged-chr14-34671190-2	chr14	34671090	34671290	+	544.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2738.0	NM_001004436	218914.0	Mm.27957	NM_001004436	ENSMUSG00000041408	Wapl	A530089A20Rik|BC037674|DIF-2|FOE|Wapal	WAPL cohesin release factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-61075847-2	chr18	61075747	61075947	+	629.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008809, intron 14 of 22)	L1Md_F2|LINE|L1	-29725.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-149990482-4	chr4	149990349	149990549	+	764.662476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291004, intron 3 of 4)	intron (NM_001291004, intron 3 of 4)	12787.0	NM_001291004	100198.0	Mm.22183	NM_173371	ENSMUSG00000028980	H6pd	AI785303|G6pd1|Gpd-1|Gpd1	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-8634864-4	chr11	8634752	8634952	+	899.8833619999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 1 of 30)	intron (NM_001083587, intron 1 of 30)	29683.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102456237-1	chr12	102456137	102456337	+	1000.0	f0_balb.idr	Intergenic	Intergenic	-12897.0	NM_001199004	27277.0	Mm.273370	NM_013747	ENSMUSG00000021192	Golga5	Ret-II	golgi autoantigen, golgin subfamily a, 5	protein-coding	3.17286055701061	3.47666994238764	2.43863153200159	2.36701046941137	2.98775057538555	3.16615925617036	3.38892200986585	1.80948936918486	0.0160344126466075	0.98279849999321	0.998431161219273
Merged-chr11-106382010-2	chr11	106381915	106382115	+	694.791626	f1_balb.idr|f1_c57bl6.idr	intron (NM_010494, intron 1 of 3)	intron (NM_010494, intron 1 of 3)	766.0	NM_010494	15896.0	Mm.394	NM_010494	ENSMUSG00000001029	Icam2	CD102|Icam-2|Ly-60	intercellular adhesion molecule 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16291519-2	chr7	16291412	16291612	+	553.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4717.0	NM_001136471	243846.0	Mm.482401	NM_172297	ENSMUSG00000041375	Ccdc9	2600011L02Rik	coiled-coil domain containing 9	protein-coding	-1.84436392554074	-1.52091821270385	-1.82290882857571	-1.83054882630441	-1.84220491470818	-1.81159244170985	-1.82080331928423	-1.82918127036376	-1.56828060379516	0.655578384384393	1
Merged-chr13-113609514-3	chr13	113609411	113609611	+	767.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130796, intron 1 of 1)	L2a|LINE|L2	9053.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-101961435-2	chr5	101961335	101961535	+	742.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 5 of 66)	intron (NM_172882, intron 5 of 66)	108486.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-21288319-3	chr11	21288215	21288415	+	999.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290628, intron 7 of 22)	B2_Mm1t|SINE|B2	49283.0	NM_001290628	245944.0	Mm.170103	NM_139061	ENSMUSG00000020128	Vps54	Hcc8|Vps54l|mSLP8|wr	VPS54 GARP complex subunit	protein-coding	3.61409271357604	1.76734719279929	2.59779509196367	4.10106312114993	3.46306235223576	3.64606711089212	3.60423532540356	3.760904680352	0.451594684012305	0.500768088919898	0.938130176835437
Merged-chr3-60503419-2	chr3	60503319	60503519	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253711, intron 1 of 7)	intron (NM_001253711, intron 1 of 7)	2240.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-148878883-4	chr2	148878806	148879006	+	712.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3394.0	NM_009976	13010.0	Mm.4263	NM_009976	ENSMUSG00000027447	Cst3	CysC	cystatin C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35112827-1	chr17	35112727	35112927	+	823.0	f1_balb.idr	TTS (NM_148947)	TTS (NM_148947)	2573.0	NM_148939	266614.0	Mm.104680	NM_148939	ENSMUSG00000043807	Ly6g5b	-	lymphocyte antigen 6 complex, locus G5B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-62209767-2	chr15	62209667	62209867	+	816.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_132746, intron 3 of 6)	B2_Mm2|SINE|B2	9684.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-92241363-4	chr6	92241262	92241462	+	831.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009426)	TTS (NM_009426)	3288.0	NM_009426	22044.0	Mm.1363	NM_009426	ENSMUSG00000005892	Trh	Pro-TRH|Trf	thyrotropin releasing hormone	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-64040070-3	chr13	64039954	64040154	+	742.011108	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49147.0	NM_008291	15487.0	Mm.5109	NM_008291	ENSMUSG00000033122	Hsd17b3	-	hydroxysteroid (17-beta) dehydrogenase 3	protein-coding	1.71219577658389	2.281067084105	2.68133812584736	3.0013644168579	1.28900077101566	2.98501810972191	2.70291263593596	2.14881715171309	-0.15484210935785	0.866476635178833	0.998431161219273
Merged-chr11-106562959-4	chr11	106562847	106563047	+	986.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198292, intron 2 of 11)	MTEb|LTR|ERVL-MaLR	49983.0	NM_198292	21763.0	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25130809-2	chr7	25130709	25130909	+	778.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163556, intron 1 of 13)	intron (NM_001163556, intron 1 of 13)	1651.0	NM_011138	18987.0	Mm.76683	NM_011138	ENSMUSG00000008496	Pou2f2	Oct-2|Oct2a|Oct2b|Oct2c|Oct2d|Otf-2|Otf2	POU domain, class 2, transcription factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-8674344-4	chr16	8674256	8674456	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2203.0	NM_025821	52502.0	Mm.142095	NM_025821	ENSMUSG00000008393	Carhsp1	1200011K09Rik|Crhsp-24|D16Ertd465e	calcium regulated heat stable protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-142074299-4	chr4	142074247	142074447	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145402, intron 1 of 2)	G-rich|Low_complexity|Low_complexity	-9951.0	NR_027137	100038693.0	Mm.402714	NR_027137	ENSMUSG00000073728	Tmem51os1	Gm10565|Tmem51as1	Tmem51 opposite strand 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-114301692-3	chr7	114301587	114301787	+	962.8666380000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L4_A_Mam|LINE|RTE-X	-25571.0	NM_011965	26440.0	Mm.121265	NM_011965	ENSMUSG00000030751	Psma1	C2|HC2|Pros-30|alpha-type	proteasome (prosome, macropain) subunit, alpha type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-23954494-2	chr11	23954394	23954594	+	989.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59224.0	NM_172555	216578.0	Mm.470599	NM_172555	ENSMUSG00000020273	Papolg	9630006B20Rik	poly(A) polymerase gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-11045181-4	chr19	11045084	11045284	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5382.0	NR_102366	107350.0	Mm.6381	NM_001177351	ENSMUSG00000075010	AW112010	-	expressed sequence AW112010	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-25289375-4	chr9	25289277	25289477	+	828.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359738, intron 5 of 12)	intron (NM_001359738, intron 5 of 12)	36485.0	NM_001359738	235072.0	Mm.270259	NM_009859	ENSMUSG00000001833	Sept7	Cdc10|E430034N22	septin 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-114356651-4	chr7	114356539	114356739	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_029438, intron 3 of 4)	intron (NR_029438, intron 3 of 4)	58522.0	NR_029437	71045.0	Mm.235682	NR_029437	ENSMUSG00000087475	4933406I18Rik	4933403D24Rik	RIKEN cDNA 4933406I18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71477805-2	chr8	71477735	71477935	+	819.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164679, intron 16 of 16)	B3|SINE|B2	8232.0	NM_001164679	382014.0	Mm.260360	NM_001164679	ENSMUSG00000034863	Ano8	BC053460|Tmem16h	anoctamin 8	protein-coding	0.466566554840793	0.0858114505264561	0.079156773874642	0.073997146052579	0.579742781930687	0.0873065782020854	0.0806276401153529	1.0033167399057	2.13767831324952	0.322883766127809	1
Merged-chr2-24919630-4	chr2	24919521	24919721	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172545)	promoter-TSS (NM_172545)	-12.0	NM_001109686	77683.0	Mm.24176	NM_172545	ENSMUSG00000036893	Ehmt1	9230102N17Rik|D330003E03|Eu-HMTase1|GLP|GLP1|KMT1D|mKIAA1876	euchromatic histone methyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102719787-4	chr12	102719691	102719891	+	847.145874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14922.0	NM_172584	217837.0	Mm.482192	NM_172584	ENSMUSG00000057963	Itpk1	BC031182	inositol 1,3,4-triphosphate 5/6 kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-12382812-4	chr2	12382709	12382909	+	973.94165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355537, intron 8 of 13)	intron (NM_001355537, intron 8 of 13)	36651.0	NM_001355537	66960.0	Mm.34059	NM_024185	ENSMUSG00000026767	Mindy3	1810041E18Rik|2310047O13Rik|5830410F13Rik|AI447827|AW111958|Fam188a	MINDY lysine 48 deubiquitinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-108119128-2	chr12	108119028	108119228	+	608.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_028262, exon 7 of 13)	exon (NM_028262, exon 7 of 13)	60156.0	NM_028262	52690.0	Mm.159185	NM_028262	ENSMUSG00000056770	Setd3	2610102I01Rik|2610305M23Rik|6030490B17Rik|D12Ertd771e	SET domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-132430200-1	chr5	132430100	132430300	+	699.0	f0_balb.idr	intron (NM_177047, intron 1 of 19)	intron (NM_177047, intron 1 of 19)	112143.0	NM_177047	319974.0	Mm.409595	NM_177047	ENSMUSG00000029673	Auts2	2700063G02Rik|A730011F23Rik|D830032G16Rik	autism susceptibility candidate 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101627870-4	chr11	101627735	101627935	+	948.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025654)	promoter-TSS (NM_025654)	-114.0	NM_025654	66599.0	Mm.41449	NM_025654	ENSMUSG00000010362	Rdm1	2410008M22Rik|AW212028|Rad52b	RAD52 motif 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-33843201-4	chr17	33843104	33843304	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001305169)	promoter-TSS (NM_001305169)	113.0	NM_019421	54219.0	Mm.11175	NM_019421	ENSMUSG00000002308	Cd320	425O18-1|8D6|D17Ertd716e|NG29|TCblR|VLDL	CD320 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70289488-4	chr14	70289386	70289586	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008915)	promoter-TSS (NM_008915)	11.0	NM_001360229	19057.0	Mm.439683	NM_008915	ENSMUSG00000022092	Ppp3cc	Calnc|PP2BA gamma	protein phosphatase 3, catalytic subunit, gamma isoform	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-94526584-4	chr16	94526478	94526678	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007834)	promoter-TSS (NM_007834)	51.0	NM_007834	13185.0	Mm.7472	NM_007834	ENSMUSG00000022898	Dscr3	AW538125|Dcra	DSCR3 arrestin fold containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-22109573-2	chr16	22109473	22109673	+	643.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_183029, intron 2 of 15)	MLTR14|LTR|ERV1	53726.0	NM_183029	319765.0	Mm.489442	NM_183029	ENSMUSG00000033581	Igf2bp2	C330012H03Rik|IMP-2|Imp2|Neilsen	insulin-like growth factor 2 mRNA binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-32391470-1	chr4	32391370	32391570	+	632.0	f0_balb.idr	Intergenic	Intergenic	-25965.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-74339324-4	chr1	74339246	74339446	+	708.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019999, intron 1 of 8)	intron (NM_019999, intron 1 of 8)	6736.0	NM_019999	56695.0	Mm.384726	NM_019999	ENSMUSG00000026179	Pnkd	2210013N15Rik|2810403H05Rik|AI854243|Brp17|MNCb-5687|MR-1|Tahccp2	paroxysmal nonkinesiogenic dyskinesia	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-51474989-2	chr1	51474884	51475084	+	654.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028696, intron 2 of 5)	L1_Mus1|LINE|L1	3415.0	NM_001310548	109019.0	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-66872281-2	chr14	66872181	66872381	+	643.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	BC1_Mm|scRNA|scRNA	3431.0	NM_001034881	432870.0	Mm.425890	NM_001034881	ENSMUSG00000075553	Gm5464	EG432870	predicted gene 5464	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-29723649-2	chr4	29723549	29723749	+	728.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	655570.0	NR_151693	102634169.0		NR_151693		Gm11917	-	predicted gene 11917	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-89442133-3	chr10	89441991	89442191	+	747.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001079876, intron 1 of 10)	intron (NM_001079876, intron 1 of 10)	1876.0	NM_001284344	237436.0	Mm.11982	NM_001033331	ENSMUSG00000074802	Gas2l3	8430435B07Rik|Gm240	growth arrest-specific 2 like 3	protein-coding	0.689179030745564	0.332837263069703	0.652942153381507	0.320594612116725	0.460374136696372	0.334392066600264	0.791605412444021	1.04815055960764	1.11703106517352	0.530596981354187	1
Merged-chr2-92486569-3	chr2	92486446	92486646	+	780.027771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26028.0	NM_145832	228368.0	Mm.273990	NM_145832	ENSMUSG00000049922	Slc35c1	E430007K15Rik|fuct1	solute carrier family 35, member C1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3873028-4	chr12	3872920	3873120	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007872, intron 5 of 22)	intron (NM_007872, intron 5 of 22)	-10776.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-6515429-2	chr18	6515333	6515533	+	886.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007935, intron 1 of 13)	intron (NM_007935, intron 1 of 13)	675.0	NM_007935	13831.0	Mm.312133	NM_007935	ENSMUSG00000024240	Epc1	2400007E14Rik|5730566F07Rik|A930032N02Rik|mir-1893	enhancer of polycomb homolog 1	protein-coding	0.954449105153528	0.424927068730536	0.211612373899847	0.205933862395963	0.49006862358685	0.991359882109255	0.213230579053811	0.206927927367152	0.157410023496416	0.935548288765934	1
Merged-chr1-24005610-4	chr1	24005500	24005700	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026503)	promoter-TSS (NM_026503)	40.0	NM_026503	68002.0	Mm.250424	NM_026503	ENSMUSG00000026154	Sdhaf4	1110058L19Rik|1700001E18Rik|C6orf57	succinate dehydrogenase complex assembly factor 4	protein-coding	5.32090426485032	5.02881229071996	5.77938213270084	4.23293012054196	5.68616374159731	5.01832470323622	5.37772190524694	5.04006452623821	0.134049377044494	0.706664458518916	0.998431161219273
Merged-chr4-145239900-4	chr4	145239776	145239976	+	790.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011610, intron 1 of 9)	intron (NM_011610, intron 1 of 9)	6994.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-23265987-2	chr16	23265887	23266087	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252505, intron 2 of 7)	intron (NM_001252505, intron 2 of 7)	-24483.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122536181-3	chr5	122536144	122536344	+	907.861084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34019.0	NR_027838	11938.0	Mm.227583	NM_009722	ENSMUSG00000029467	Atp2a2	9530097L16Rik|D5Wsu150e|SERCA2|SERCA2B|Serca2a|mKIAA4195	ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	protein-coding	2.03085094631092	1.1707244787695	2.30157413697405	1.53091672264666	1.30327653071976	1.80621524607959	2.01437753163067	2.24576076239757	0.13385373964893	0.901439364613325	0.998431161219273
Merged-chr12-103425935-4	chr12	103425835	103426035	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020494)	promoter-TSS (NM_020494)	-68.0	NM_020494	27225.0	Mm.3935	NM_020494	ENSMUSG00000041645	Ddx24	1700055J08Rik|2510027P10Rik|AI649272	DEAD (Asp-Glu-Ala-Asp) box polypeptide 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-53517217-2	chr8	53517117	53517317	+	553.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001005847, intron 4 of 8)	Charlie12|DNA|hAT-Charlie	5515.0	NM_001005847	11593.0	Mm.334535	NM_001005847	ENSMUSG00000031521	Aga	AW060726	aspartylglucosaminidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-99298147-4	chr5	99298056	99298256	+	998.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_030692, exon 4 of 4)	non-coding (NR_030692, exon 4 of 4)	-45229.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.34697793693401	0.00122714719338474	0.643683907801366	-0.00758552431543988	0.355300924108601	0.00235113491865752	-0.00265476155124522	0.153185899162207	-1.11358084797006	0.601190981870974	1
Merged-chr6-124830091-4	chr6	124829987	124830187	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001326594)	promoter-TSS (NM_001326594)	-89.0	NM_013538	14793.0	Mm.285723	NM_013538	ENSMUSG00000023505	Cdca3	2410005A12Rik|C8|Grcc8|Tome-1	cell division cycle associated 3	protein-coding	4.80839461342091	5.01589095972041	5.16723143984328	5.90616503442108	5.11765830467312	4.91299811551112	5.13236049010636	4.71506946840868	-0.367204224529503	0.279593328896128	0.782875234013061
Merged-chr4-128660344-4	chr4	128660264	128660464	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195130, intron 1 of 14)	intron (NM_001195130, intron 1 of 14)	5662.0	NM_001195130	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-51653745-2	chr3	51653645	51653845	+	655.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7434.0	NM_174995	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-94565613-3	chr16	94565507	94565707	+	804.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4599.0	NM_007890	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-83909099-2	chr17	83908999	83909199	+	646.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54681.0	NR_155491	320021.0	Mm.379475	NR_155490		C430042M11Rik	-	RIKEN cDNA C430042M11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-43805766-3	chr16	43805735	43805935	+	859.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007877, intron 2 of 6)	intron (NM_007877, intron 2 of 6)	43614.0	NM_007877	13490.0	Mm.439735	NM_007877	ENSMUSG00000022705	Drd3	D3R	dopamine receptor D3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-72572077-4	chr8	72571973	72572173	+	993.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_151663, exon 1 of 3)	non-coding (NR_151663, exon 1 of 3)	250.0	NM_001357279	74166.0	Mm.212927	NM_144534	ENSMUSG00000031791	Tmem38a	1110001E17Rik|AI413399|SPR-27|TRIC-A|mg33a	transmembrane protein 38A	protein-coding	2.97458462601372	2.50813663329712	2.84496177724452	2.07921124657722	2.72862490210087	2.52632878582701	1.76260551177901	2.59414476283009	-0.401442056864787	0.614682878962219	0.977257714216349
Merged-chr3-8986075-4	chr3	8985975	8986175	+	918.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	18129.0	NM_001357073	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-25993544-4	chr15	25993434	25993634	+	970.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144523, intron 4 of 5)	intron (NM_144523, intron 4 of 5)	9168.0	NM_144523	52521.0	Mm.29145	NM_144523	ENSMUSG00000052253	Zfp622	1110033B05Rik|D15Ertd806e|ZPR9|Znf622	zinc finger protein 622	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-7846426-2	chr15	7846326	7846526	+	571.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30876.0	NM_001301357	14573.0	Mm.4679	NM_010275	ENSMUSG00000022144	Gdnf	AI385739|ATF	glial cell line derived neurotrophic factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-71529708-4	chr2	71529593	71529793	+	987.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_002854)	TTS (NR_002854)	248.0	NM_010053	13390.0	Mm.475101	NM_010053	ENSMUSG00000041911	Dlx1	Dlx|Dlx-1	distal-less homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-181273948-4	chr2	181273796	181273996	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198169, intron 2 of 9)	MTA_Mm|LTR|ERVL-MaLR	14070.0	NM_198169	229004.0	Mm.220423	NM_198169	ENSMUSG00000038705	Gmeb2	AI839884	glucocorticoid modulatory element binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-5098397-4	chr11	5098366	5098566	+	996.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290491)	promoter-TSS (NM_001290491)	622.0	NM_001283062	14030.0	Mm.142822	NM_007968	ENSMUSG00000009079	Ewsr1	Ews|Ewsh	Ewing sarcoma breakpoint region 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-90218640-2	chr3	90218540	90218740	+	614.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001293741, intron 1 of 7)	RMER17C|LTR|ERVK	-2144.0	NM_026677	68328.0	Mm.29355	NM_026677	ENSMUSG00000027935	Rab13	0610007N03Rik|B230212B15Rik	RAB13, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-6721184-4	chr2	6721108	6721308	+	979.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110232, intron 4 of 15)	intron (NM_001110232, intron 4 of 15)	454.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-98926445-4	chr13	98926325	98926525	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178716)	promoter-TSS (NM_178716)	-41.0	NM_178716	238799.0	Mm.173286	NM_178716	ENSMUSG00000009470	Tnpo1	AU021749|D13Ertd688e|IPO2|Kpnb2|MIP|MIP1|TRN	transportin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-13875161-4	chr6	13875082	13875282	+	966.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045995, intron 1 of 2)	MTE2a|LTR|ERVL-MaLR	3613.0	NR_045995	76311.0	Mm.367129	NR_045995	ENSMUSG00000097616	1110019D14Rik	-	RIKEN cDNA 1110019D14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-146100167-3	chr3	146100065	146100265	+	775.766663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172864, intron 3 of 22)	MTEb|LTR|ERVL-MaLR	7871.0	NM_172864	242253.0	Mm.235040	NM_172864	ENSMUSG00000043020	Wdr63	4931433A13Rik|IC140|Ida7	WD repeat domain 63	protein-coding	0.302128291547956	0.325251002837974	1.19349690783359	0.756162520454611	0.589683385188885	0.532275542612698	0.319382095663269	0.635025216265822	-1.0741470931676	0.545029312275033	1
Merged-chr17-67343133-4	chr17	67343049	67343249	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	11310.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-47269332-1	chr18	47269232	47269432	+	543.0	f1_balb.idr	intron (NM_001311097, intron 17 of 17)	intron (NM_001311097, intron 17 of 17)	99536.0	NM_018744	20358.0	Mm.40909	NM_018744	ENSMUSG00000019647	Sema6a	A730020P05Rik|AI851735|Sema6A-1|Semaq|VIa	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-14535898-1	chr16	14535798	14535998	+	695.0	f0_balb.idr	Intergenic	RMER16_Mm|LTR|ERVK	-26419.0	NR_033556	545280.0	Mm.123679	NR_033556		A630010A05Rik	-	RIKEN cDNA A630010A05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27911919-4	chr17	27911829	27912029	+	823.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181413, intron 1 of 24)	intron (NM_181413, intron 1 of 24)	2623.0	NM_181413	224650.0	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	-0.465384170634505	-0.906604505914739	-0.914637830816271	-0.916672490206766	-0.919535330580733	-0.720373187799864	-0.914054864374886	-0.755685559769329	-0.631720239981934	0.829461850493186	1
Merged-chr2-173538199-4	chr2	173538121	173538321	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15629.0	NM_028158	72221.0	Mm.46132	NM_028158	ENSMUSG00000027518	1700021F07Rik	-	RIKEN cDNA 1700021F07 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126596418-4	chr8	126596319	126596519	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2983.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-52573730-4	chr2	52573670	52573870	+	859.679199	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037099, intron 2 of 13)	intron (NM_001037099, intron 2 of 13)	-15159.0	NM_001285427	12298.0	Mm.330223	NM_146123	ENSMUSG00000017412	Cacnb4	3110038O15Rik|Cchb4|lh	calcium channel, voltage-dependent, beta 4 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132422142-4	chr4	132422077	132422277	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161797, intron 1 of 12)	CpG	269.0	NM_001161797	100169.0	Mm.158361	NM_175306	ENSMUSG00000066043	Phactr4	3110001B12Rik|AI527228|AW495572|C330013F19Rik|N28169|mKIAA4120	phosphatase and actin regulator 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-52917032-3	chr2	52916939	52917139	+	589.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	MTC|LTR|ERVL-MaLR	59171.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101422214-2	chr7	101422094	101422294	+	578.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001008548, intron 1 of 30)	intron (NM_001008548, intron 1 of 30)	503.0	NR_152192	207728.0	Mm.247564	NM_001008548	ENSMUSG00000030653	Pde2a	CGS-PDE|cGSPDE	phosphodiesterase 2A, cGMP-stimulated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-91590995-4	chr12	91590903	91591103	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175335)	promoter-TSS (NM_175335)	-516.0	NM_175335	83602.0	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-96633787-4	chr15	96633705	96633905	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166458, intron 1 of 15)	MTD|LTR|ERVL-MaLR	8157.0	NM_134086	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67693768-4	chr10	67693660	67693860	+	995.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-121801.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-32568221-3	chr11	32568121	32568321	+	763.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 2 of 18)	L1MB1|LINE|L1	34955.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	0.817019186318259	1.76167976507343	1.04568053536484	1.43682309638191	1.25889553746936	1.26408311618109	1.05224203496507	1.55238303071365	-0.114315351746082	0.929714259135253	0.998431161219273
Merged-chr4-128991893-2	chr4	128991793	128991993	+	919.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-1331.0	NM_016895	11637.0	Mm.29460	NM_016895	ENSMUSG00000028792	Ak2	Ak-2|D4Ertd220e	adenylate kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-31210537-2	chr6	31210437	31210637	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_110469, intron 1 of 3)	B3|SINE|B2	7937.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-40638743-4	chr19	40638641	40638841	+	975.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304721, intron 1 of 9)	intron (NM_001304721, intron 1 of 9)	-21029.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	0.779411242976307	0.210285631010036	0.203173511571506	0.19765987794627	0.876093379097372	0.211883692233069	0.918027139438411	0.198624816339593	1.33074176503113	0.522706744315258	1
Merged-chr7-80919115-4	chr7	80919005	80919205	+	885.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019951, intron 4 of 5)	intron (NM_019951, intron 4 of 5)	-14043.0	NM_001291280	68039.0	Mm.22246	NM_026523	ENSMUSG00000025723	Nmb	3110023K12Rik	neuromedin B	protein-coding	1.85495428771333	2.74736763090174	1.47848482585816	1.95872454939767	2.2954843563869	2.76839492674045	1.88009626889022	1.20130721769583	0.149625546657352	0.883014316547796	0.998431161219273
Merged-chr17-56613439-4	chr17	56613371	56613571	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018730)	promoter-TSS (NM_018730)	76.0	NM_018730	54217.0	Mm.11376	NM_018730	ENSMUSG00000057863	Rpl36	-	ribosomal protein L36	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-52268797-1	chr3	52268697	52268897	+	1000.0	f0_c57.idr	5' UTR (NM_019739, exon 1 of 3)	5' UTR (NM_019739, exon 1 of 3)	460.0	NM_019739	56458.0	Mm.29891	NM_019739	ENSMUSG00000044167	Foxo1	AI876417|Afxh|FKHR|Fkhr1|Foxo1a	forkhead box O1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36572364-3	chr1	36572269	36572469	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001126046, intron 12 of 14)	intron (NM_001126046, intron 12 of 14)	-13988.0	NM_001126047	20353.0	Mm.29558	NM_001126047	ENSMUSG00000026121	Sema4c	AI426163|M-Sema F|Semacl1|Semaf|Semai|sema I	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-137778394-2	chr3	137778294	137778494	+	866.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5221.0	NR_105801	102466638.0		NR_105801	ENSMUSG00000099011	Mir6380	Gm27356|mmu-mir-6380	microRNA 6380	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-143754340-2	chr7	143754240	143754440	+	656.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12377.0	NM_024289	79196.0	Mm.21199	NM_024289	ENSMUSG00000037606	Osbpl5	1110006M06Rik|AI462538|ORP5|Obph1|Osbp2	oxysterol binding protein-like 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-46662061-3	chr2	46661963	46662163	+	813.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	965458.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-61415423-4	chr3	61415299	61415499	+	969.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50892.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-39779855-2	chr6	39779755	39779955	+	600.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31081.0	NM_010270	14548.0	Mm.377071	NM_010270	ENSMUSG00000029918	Mrps33	AI841153|CGI-139|Gdap3|MRP-S33|PTD003	mitochondrial ribosomal protein S33	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-26445426-4	chr2	26445304	26445504	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153125)	promoter-TSS (NM_153125)	-188.0	NM_153125	227648.0	Mm.206371	NM_153125	ENSMUSG00000026924	Sec16a	AU024582|C230052J16Rik	SEC16 homolog A, endoplasmic reticulum export factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-55511237-1	chr1	55511137	55511337	+	551.0	f1_c57bl6.idr	intron (NM_001114663, intron 1 of 5)	B4A|SINE|B4	105291.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	-1.58994551673671	-1.55912852307891	-1.56844783632235	-1.57610299769523	-1.18549093183599	-1.55710898902261	-1.56633814807757	-1.57473272746952	1.78703309985663	0.610309988231842	1
Merged-chr18-60932493-4	chr18	60932426	60932626	+	936.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177407, intron 1 of 17)	intron (NM_177407, intron 1 of 17)	6894.0	NM_177407	12322.0	Mm.131530	NM_009792	ENSMUSG00000024617	Camk2a	CaMKII|R74975|mKIAA0968	calcium/calmodulin-dependent protein kinase II alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-58475036-4	chr16	58474930	58475130	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357433, intron 7 of 10)	intron (NM_001357433, intron 7 of 10)	48396.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134539636-4	chr6	134539496	134539696	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008514, intron 2 of 22)	intron (NM_008514, intron 2 of 22)	27317.0	NM_008514	16974.0	Mm.321990	NM_008514	ENSMUSG00000030201	Lrp6	C030016K15Rik|Cd|Gw|ska26|ska<m26Jus>|skax26	low density lipoprotein receptor-related protein 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134389665-2	chr6	134389567	134389767	+	637.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_153848, intron 3 of 8)	intron (NR_153848, intron 3 of 8)	-6662.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	-0.590535183227988	-0.927506822323212	-0.936065523452905	-0.937949444978677	-0.686580999095573	-0.925042559271787	-0.935525276798409	-0.781629005664263	0.114635924104852	0.969143117123263	1
Merged-chr15-101224653-2	chr15	101224553	101224753	+	805.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045326)	promoter-TSS (NR_045326)	124.0	NR_045327	380977.0	Mm.399924	NR_045326	ENSMUSG00000097915	A330009N23Rik	-	RIKEN cDNA A330009N23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-156418571-4	chr2	156418475	156418675	+	900.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	-2334.0	NM_001291122	13821.0	Mm.20852	NM_013510	ENSMUSG00000027624	Epb41l1	4.1N|Epb4.1l1|NBL1|mKIAA0338	erythrocyte membrane protein band 4.1 like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21425460-3	chr9	21425415	21425615	+	885.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357721, intron 1 of 19)	intron (NM_001357721, intron 1 of 19)	607.0	NM_001357719	13430.0	Mm.433257	NM_007871	ENSMUSG00000033335	Dnm2	Dyn2|Udnm|b2b2159Clo	dynamin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-113591440-2	chr5	113591340	113591540	+	801.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41020.0	NM_177292	320916.0	Mm.102783	NM_177292	ENSMUSG00000063430	Wscd2	4933413A10Rik|C530024P05Rik|Gm450	WSC domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-86805632-3	chr5	86805522	86805722	+	571.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177680, intron 1 of 16)	B1_Mur4|SINE|Alu	1356.0	NM_001359907	231386.0	Mm.196325	NM_177680	ENSMUSG00000035851	Ythdc1	A730098D12Rik|C80342|mKIAA1966	YTH domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-134552398-4	chr5	134552307	134552507	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009990)	promoter-TSS (NM_009990)	27.0	NM_001039162	269713.0	Mm.255138	NM_009990	ENSMUSG00000063146	Clip2	B230327O20|CLIP-115|Clip1|Cyln2|WSCR4|mKIAA0291|wbscr4	CAP-GLY domain containing linker protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-86948969-3	chr4	86948869	86949069	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	74555.0	NM_139306	230379.0	Mm.45019	NM_139306	ENSMUSG00000038007	Acer2	2410116I05Rik|Asah3l|CRG-L1|maCER2	alkaline ceramidase 2	protein-coding	1.69496181383295	2.57392664059362	1.34021528996262	1.79305523877914	2.50331195917692	3.51282624394186	2.91346402022056	2.63793878257904	2.15457995602201	0.0126063165627109	0.128178462813055
Merged-chr7-100458336-4	chr7	100458248	100458448	+	939.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001017985, intron 31 of 32)	intron (NM_001017985, intron 31 of 32)	-14643.0	NM_009464	22229.0	Mm.6254	NM_009464	ENSMUSG00000032942	Ucp3	AI645527|Slc25a9|UCP-3	uncoupling protein 3 (mitochondrial, proton carrier)	protein-coding	3.17323439480775	2.89508524929332	3.5192615737734	4.06270744746627	3.71216625253418	3.17947979637987	3.18282321865015	3.36033425279534	-0.172866057106406	0.763796723876024	0.998431161219273
Merged-chr4-149989232-4	chr4	149989138	149989338	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291004, intron 3 of 4)	intron (NM_001291004, intron 3 of 4)	13998.0	NM_001291004	100198.0	Mm.22183	NM_173371	ENSMUSG00000028980	H6pd	AI785303|G6pd1|Gpd-1|Gpd1	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-94739515-1	chr4	94739415	94739615	+	619.0	f0_balb.idr	5' UTR (NM_001290549, exon 1 of 23)	5' UTR (NM_001290549, exon 1 of 23)	226.0	NM_001290551	21687.0	Mm.14313	NM_013690	ENSMUSG00000006386	Tek	AA517024|Cd202b|Hyk|STK1|Tie-2|Tie2	TEK receptor tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-126708086-2	chr2	126707986	126708186	+	587.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_019729, intron 1 of 18)	intron (NM_019729, intron 1 of 18)	758.0	NM_019729	84092.0	Mm.272629	NM_019729	ENSMUSG00000027363	Usp8	AI574262|AW557536|Ubpy|mKIAA0055	ubiquitin specific peptidase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33180125-4	chr16	33179999	33180199	+	967.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4972.0	NM_176840	106326.0	Mm.486405	NM_176840	ENSMUSG00000022807	Osbpl11	9430097N02Rik|AI132306|AU019795|ORP-11	oxysterol binding protein-like 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-100998347-4	chr4	100998240	100998440	+	714.233337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198037, intron 26 of 26)	intron (NM_198037, intron 26 of 26)	-70698.0	NM_183024	242570.0	Mm.185636	NM_183024	ENSMUSG00000035275	Raver2	A430091O22Rik	ribonucleoprotein, PTB-binding 2	protein-coding	2.64785217854344	3.53004356785586	4.0570464427806	3.47223978403003	3.84010665363967	2.08700044788396	3.15109616026366	3.69316966245898	-0.236700537813382	0.715942184663155	0.998431161219273
Merged-chr6-6280995-3	chr6	6280927	6281127	+	969.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_136906, exon 3 of 3)	non-coding (NR_136906, exon 3 of 3)	32368.0	NR_136905	101056138.0	Mm.389085	NR_136904	ENSMUSG00000093482	Gm20619	-	predicted gene 20619	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-38403551-4	chr18	38403470	38403670	+	891.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB5|LINE|L1	-15337.0	NM_022996	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-103485173-4	chr2	103485055	103485255	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009804)	promoter-TSS (NM_009804)	-2.0	NM_009804	12359.0	Mm.4215	NM_009804	ENSMUSG00000027187	Cat	2210418N07|Cas-1|Cas1|Cs-1	catalase	protein-coding	4.66836696028332	4.83300199601067	5.57677319876538	4.85935907930817	5.19882575320119	5.39220917337305	5.36455916001775	4.95765647874293	0.243514003498491	0.454655107527981	0.919120493489568
Merged-chr17-36892477-4	chr17	36892365	36892565	+	729.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2340.0	NM_001172168	195359.0	Mm.32606	NM_001033235	ENSMUSG00000073399	Trim40	Gm319|Gm35|Gm865	tripartite motif-containing 40	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-38899476-2	chr6	38899376	38899576	+	662.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-19510.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-8256604-3	chr5	8256505	8256705	+	870.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001007220, intron 3 of 28)	RLTR26_Mus|LTR|ERVK	111555.0	NM_001007221	11496.0	Mm.275895	NM_001007220	ENSMUSG00000040537	Adam22	2900022I03Rik|AI854032|MDC2	a disintegrin and metallopeptidase domain 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-114620459-4	chr5	114620297	114620497	+	890.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38024.0	NM_022017	63873.0	Mm.266450	NM_022017	ENSMUSG00000014158	Trpv4	0610033B08Rik|OTRPC4|Trp12|VR-OAC|VRL-2|VROAC	transient receptor potential cation channel, subfamily V, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-120118391-4	chr9	120118297	120118497	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144793, intron 3 of 6)	Tigger7|DNA|TcMar-Tigger	7998.0	NM_144793	208638.0	Mm.236656	NM_144793	ENSMUSG00000032519	Slc25a38	AV019094|BC010801|appoptosin	solute carrier family 25, member 38	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-48999480-2	chr7	48999380	48999580	+	666.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111016, intron 2 of 38)	intron (NM_001111016, intron 2 of 38)	40407.0	NM_001111016	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-108796217-2	chr3	108796117	108796317	+	755.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_011504, intron 17 of 18)	intron (NM_011504, intron 17 of 18)	44285.0	NM_011504	20912.0	Mm.316894	NM_011504	ENSMUSG00000027882	Stxbp3	Munc-18c|Stxbp3a|Sxtbp3|Unc18-3	syntaxin binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-17023524-2	chr7	17023424	17023624	+	666.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011155, intron 1 of 12)	intron (NM_011155, intron 1 of 12)	4390.0	NM_011155	19060.0	Mm.3294	NM_011155	ENSMUSG00000003099	Ppp5c	AU020526|PP5	protein phosphatase 5, catalytic subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-91074806-4	chr1	91074695	91074895	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008515, intron 3 of 22)	intron (NM_008515, intron 3 of 22)	21351.0	NM_001310732	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97641962-3	chr11	97641891	97642091	+	602.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-12275.0	NM_175332	103551.0	Mm.24506	NM_175332	ENSMUSG00000043439	Epop	AA409164|AI413509|AW539173|E13|E130012A19Rik|esPRC2p48	elongin BC and polycomb repressive complex 2 associated protein	protein-coding	1.29155080787099	0.908504851058862	1.25762792863598	1.06974855039188	1.30184894631525	1.59269316458036	1.53557920646924	1.6871865191993	1.63895011973544	0.186511753632401	0.663632271673055
Merged-chr16-57503547-2	chr16	57503447	57503647	+	592.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	-45695.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	-0.906278453279413	-0.407431447964563	-1.048208294768	-1.05352992943534	-1.05671119907732	-1.03350740516421	-1.04547307017549	-1.05313686373073	-2.88793990269837	0.350705703949045	1
Merged-chr7-109671729-3	chr7	109671629	109671829	+	835.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32008.0	NM_020616	57373.0	Mm.334138	NM_020616	ENSMUSG00000031023	Akip1	BCA3|C11orf17|D7H11orf17|D930014E17Rik|ICRFP703B1614Q5.6|ORF27	A kinase (PRKA) interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-101657817-1	chr4	101657717	101657917	+	605.0	f1_c57bl6.idr	intron (NM_175036, intron 3 of 3)	intron (NM_175036, intron 3 of 3)	10034.0	NM_175036	230514.0	Mm.4756	NM_175036	ENSMUSG00000035212	Leprot	LEPR|OB-RGRP|Obrgrp|VPS55	leptin receptor overlapping transcript	protein-coding	0.420533119910786	0.0756876011006814	0.618502053655884	0.0664090721685525	0.610655473198145	0.0768707226181833	0.0716009836454021	0.227135705095119	-0.350823022956673	0.866159787988974	1
Merged-chr5-139793626-4	chr5	139793529	139793729	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010757, intron 1 of 2)	intron (NM_010757, intron 1 of 2)	2093.0	NM_010757	17135.0	Mm.157313	NM_010757	ENSMUSG00000018143	Mafk	AW061068|NF-E2|Nfe2u	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein K (avian)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-81214865-2	chr7	81214765	81214965	+	696.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008803, intron 1 of 21)	intron (NM_008803, intron 1 of 21)	1061.0	NM_008803	18584.0	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-80656435-2	chr18	80656335	80656535	+	570.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198429, intron 6 of 9)	intron (NM_198429, intron 6 of 9)	51738.0	NM_001164111	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-172334870-4	chr1	172334759	172334959	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5537.0	NM_001360808	16524.0	Mm.261168	NM_008429	ENSMUSG00000038026	Kcnj9	1700085N21Rik|Girk3|Kir3.3|mbGIRK3	potassium inwardly-rectifying channel, subfamily J, member 9	protein-coding	5.08588926382803	5.05134191586327	5.16797441756649	5.40555841325295	5.84888898860155	5.46331806765864	4.84089924148498	5.93683154294134	0.467746915787825	0.131790344544006	0.568051114598616
Merged-chr13-13667982-2	chr13	13667882	13668082	+	819.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_010748, intron 18 of 52)	Lx5c|LINE|L1	77573.0	NM_010748	17101.0	Mm.342337	NM_010748	ENSMUSG00000019726	Lyst	D13Sfk13|beige|bg	lysosomal trafficking regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-121346228-2	chr5	121346128	121346328	+	550.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_181421, intron 60 of 75)	intron (NM_181421, intron 60 of 75)	39181.0	NM_001359947	231712.0	Mm.20488	NM_172275	ENSMUSG00000042726	Trafd1	1110008K06Rik|Fln29	TRAF type zinc finger domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-127236715-4	chr6	127236571	127236771	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	71296.0	NR_073373	232386.0	Mm.257367	NR_073373	ENSMUSG00000107153	Gm38404	D130058E03	predicted gene, 38404	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-149398438-3	chr4	149398336	149398536	+	947.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022022, intron 2 of 26)	intron (NM_022022, intron 2 of 26)	28195.0	NM_022022	63958.0	Mm.415260	NM_022022	ENSMUSG00000028960	Ube4b	4930551I19Rik|4933406G05Rik|AU014668|D4Bwg0973e|UFD2|UFD2a|Ufd2p|mKIAA0684	ubiquitination factor E4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119089298-4	chr11	119089177	119089377	+	793.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3040.0	NM_007625	12418.0	Mm.268070	NM_007625	ENSMUSG00000039989	Cbx4	MPc2|PC2	chromobox 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-66143047-2	chr2	66142947	66143147	+	635.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18254.0	NM_015736	14425.0	Mm.439760	NM_015736	ENSMUSG00000026994	Galnt3	-	polypeptide N-acetylgalactosaminyltransferase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-146174029-2	chr4	146173929	146174129	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177545, intron 2 of 4)	RMER17B2|LTR|ERVK	16339.0	NM_001177545	667666.0	Mm.459230	NM_001177545	ENSMUSG00000066007	Zfp600	Gm13164	zinc finger protein 600	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94372173-2	chr10	94372073	94372273	+	889.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 1 of 4)	intron (NM_001359762, intron 1 of 4)	60224.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-138658221-1	chr5	138658121	138658321	+	1000.0	f1_balb.idr	Intergenic	Intergenic	35362.0	NM_183025	243308.0	Mm.36612	NM_183025	ENSMUSG00000056014	A430033K04Rik	C86988	RIKEN cDNA A430033K04 gene	protein-coding	1.86795703712308	2.31662576240712	2.03803537299359	1.26881271310081	1.8845498302589	2.01417366495015	1.06815283246049	1.04825124280618	-0.963569528897614	0.411071013706834	0.894256659801134
Merged-chr18-67939715-2	chr18	67939615	67939815	+	604.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172631, intron 1 of 5)	intron (NM_172631, intron 1 of 5)	6542.0	NM_172631	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150545010-4	chr4	150544887	150545087	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 11 of 22)	intron (NM_001085492, intron 11 of 22)	107187.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	-1.50561175621786	-1.47331375025452	-1.02203377115094	-1.49110398925286	-1.50334449591826	-1.47119716082604	-1.48086985756939	-1.48966786617048	-2.07776723614574	0.550394407909386	1
Merged-chr4-119421371-1	chr4	119421271	119421471	+	572.0	f1_c57bl6.idr	intron (NM_026494, intron 2 of 2)	L2c|LINE|L2	1049.0	NM_001355214	106564.0	Mm.27245	NM_026494	ENSMUSG00000028636	Ppcs	6330579B17Rik|AI413471|AI790434	phosphopantothenoylcysteine synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-31076885-1	chr17	31076785	31076985	+	618.0	f1_balb.idr	intron (NM_009593, intron 2 of 14)	B1_Mus1|SINE|Alu	19191.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-93687164-2	chr16	93687067	93687267	+	821.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_173047, intron 2 of 2)	intron (NM_173047, intron 2 of 2)	3948.0	NM_173047	109857.0	Mm.4512	NM_173047	ENSMUSG00000022947	Cbr3	1110001J05Rik|C81353	carbonyl reductase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85388720-3	chr12	85388583	85388783	+	792.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13966.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116493976-4	chr11	116493876	116494076	+	943.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3630.0	NM_026364	67763.0	Mm.25125	NM_026364	ENSMUSG00000015869	Prpsap1	5730409F23Rik|PAP39	phosphoribosyl pyrophosphate synthetase-associated protein 1	protein-coding	3.29078421893144	3.78040103013981	4.12129703525241	4.01357054582162	3.85026946292079	3.42645167364017	4.15107732957306	3.64915607193192	-0.0499927364624292	0.918911587672492	0.998431161219273
Merged-chr10-61336282-3	chr10	61336213	61336413	+	765.255554	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013753, intron 18 of 19)	intron (NM_013753, intron 18 of 19)	38477.0	NM_011073	18646.0	Mm.240313	NM_011073	ENSMUSG00000037202	Prf1	Pfn|Pfp|Prf-1	perforin 1 (pore forming protein)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-91271378-4	chr10	91271276	91271476	+	971.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50757.0	NR_151510	102633753.0	Mm.416936	NR_151510		4930534H03Rik	-	RIKEN cDNA 4930534H03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-94381394-3	chr8	94381293	94381493	+	696.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	G-rich|Low_complexity|Low_complexity	-5036.0	NM_001357205	64209.0	Mm.29151	NM_022331	ENSMUSG00000031770	Herpud1	Herp|Mifl|SUP	homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-43832570-2	chr19	43832463	43832663	+	861.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013806, intron 29 of 31)	intron (NM_013806, intron 29 of 31)	-6240.0	NR_033472	100038628.0	Mm.212585	NR_033472	ENSMUSG00000025194	Gm10768	-	predicted gene 10768	ncRNA	-0.375757419413445	-0.360747665879445	-0.365644486544674	-0.36943608638888	-0.37481490487009	0.414817682857574	-0.364562768724263	0.204651721830453	3.77813544130586	0.139695668468783	1
Merged-chr6-38638669-2	chr6	38638569	38638769	+	697.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-1430.0	NM_001033171	74253.0	Mm.121859	NM_001033171	ENSMUSG00000071537	Klrg2	2310020F24Rik	killer cell lectin-like receptor subfamily G, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-116599218-2	chr3	116599118	116599318	+	743.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030016, intron 1 of 11)	B4A|SINE|B4	4260.0	NM_001289571	72776.0	Mm.440836	NM_028349	ENSMUSG00000027959	Sass6	2810453L12Rik	SAS-6 centriolar assembly protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-121927509-4	chr8	121927413	121927613	+	847.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007608, intron 2 of 6)	intron (NM_007608, intron 2 of 6)	17399.0	NM_007608	12352.0	Mm.116761	NM_007608	ENSMUSG00000025317	Car5a	CAV|Ca5a|Car5	carbonic anhydrase 5a, mitochondrial	protein-coding	2.72466963534464	2.96755552298128	1.47749173563092	2.87757141510273	3.36173000093838	2.61833398753199	1.77439417193905	3.67776526189042	0.755903673907576	0.366063500285433	0.861036332257394
Merged-chr10-118042845-3	chr10	118042744	118042944	+	943.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15-int|LTR|ERVL	-98943.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-108664988-1	chr6	108664888	108665088	+	583.0	f0_balb.idr	exon (NM_011498, exon 5 of 5)	exon (NM_011498, exon 5 of 5)	-4054.0	NR_104577	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	-2.18138529563533	-2.15523716995652	-2.1631445789866	-2.16963996020037	-2.05513010215571	-2.15352360143315	-2.16135451490766	-2.16847729006863	0.759018020146679	0.829933115115583	1
Merged-chr13-54580428-2	chr13	54580328	54580528	+	604.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019968, intron 3 of 3)	intron (NM_019968, intron 3 of 3)	5415.0	NM_019968	56795.0	Mm.89484	NM_019968	ENSMUSG00000025870	Arl10	Arl10a|Arm1	ADP-ribosylation factor-like 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-105989494-2	chr11	105989394	105989594	+	800.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_207624, exon 25 of 25)	3' UTR (NM_207624, exon 25 of 25)	-3800.0	NR_104047	100379610.0	Mm.754	NR_104047	ENSMUSG00000085297	Gm11651	-	predicted gene 11651	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-61368560-4	chr9	61368470	61368670	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3796.0	NM_001083928	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-55053229-4	chr1	55053138	55053338	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026424, intron 1 of 3)	CpG	468.0	NM_001039710	67876.0	Mm.281019	NM_026424	ENSMUSG00000025981	Coq10b	1500041J02Rik|1700030I21Rik|9530077A17Rik|AV002237|AW742641	coenzyme Q10B	protein-coding	6.41827515248376	6.50657692290248	5.9984213279593	6.19726517980746	6.63475296994398	6.57647205542461	6.94263845069309	5.92644131801601	0.291736381709787	0.218563889244052	0.709760792985422
Merged-chr11-69662312-1	chr11	69662212	69662412	+	1000.0	f0_c57.idr	promoter-TSS (NR_035455)	promoter-TSS (NR_035455)	337.0	NR_125917	24070.0	Mm.89579	NM_011900	ENSMUSG00000018761	Mpdu1	LEC35|SL15|Supl15h	mannose-P-dolichol utilization defect 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-80555227-2	chr18	80555127	80555327	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10681.0	NR_028424	100039348.0	Mm.254722	NR_028424		Gm2176	A430076E10Rik	glucosamine-6-phosphate deaminase 1 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-24453038-4	chr5	24452957	24453157	+	826.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359881, intron 1 of 15)	intron (NM_001359881, intron 1 of 15)	880.0	NM_139153	213990.0	Mm.250703	NM_139153	ENSMUSG00000023353	Agap3	AGAP-3|AV028425|Centg3|Crag|Crag.|MRIP-1|cnt-g3	ArfGAP with GTPase domain, ankyrin repeat and PH domain 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89965788-2	chr3	89965688	89965888	+	905.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2456.0	NM_001081182	54667.0	Mm.30455	NM_001081182	ENSMUSG00000060671	Atp8b2	Id	ATPase, class I, type 8B, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36474613-2	chr1	36474513	36474713	+	999.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_033570, intron 1 of 6)	intron (NM_033570, intron 1 of 6)	3016.0	NM_033570	94220.0	Mm.422638	NM_033570	ENSMUSG00000037408	Cnnm4	5430430O18Rik|Acdp4	cyclin M4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-70201744-4	chr10	70201614	70201814	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2950.0	NM_001304739	69563.0	Mm.64672	NM_001304739	ENSMUSG00000019933	Mrln	2310015B20Rik|Linc-RAM|Mln	myoregulin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75563968-2	chr11	75563856	75564056	+	831.75	f0_balb.idr|f1_balb.idr	intron (NM_001199284, intron 9 of 13)	intron (NM_001199284, intron 9 of 13)	12527.0	NR_039553	100628624.0		NR_039553	ENSMUSG00000093100	Mir3971	mmu-mir-3971|mu-mir-3971	microRNA 3971	ncRNA	0.78977631370394	1.4723235566375	2.14219918499714	1.37076114859421	0.793564015802262	1.48480755083236	0.833440597104094	1.83766404667974	-0.695719578848629	0.616831672113228	0.977454074438997
Merged-chr2-71327961-4	chr2	71327887	71328087	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172436, intron 4 of 17)	intron (NM_172436, intron 4 of 17)	39567.0	NM_172436	78830.0	Mm.30928	NM_172436	ENSMUSG00000027010	Slc25a12	2610002D09Rik|AI839531|B230107K20Rik|BB129864	solute carrier family 25 (mitochondrial carrier, Aralar), member 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19635560-3	chr7	19635481	19635681	+	956.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019649, intron 10 of 13)	intron (NM_019649, intron 10 of 13)	-6143.0	NM_009046	19698.0	Mm.1741	NM_009046	ENSMUSG00000002983	Relb	shep	avian reticuloendotheliosis viral (v-rel) oncogene related B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-94634250-4	chr8	94634146	94634346	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359093, intron 6 of 14)	intron (NM_001359093, intron 6 of 14)	32305.0	NM_026274	67610.0	Mm.109074	NM_026274	ENSMUSG00000050079	Rspry1	4930470D19Rik|AI608258	ring finger and SPRY domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-95792479-4	chr15	95792383	95792583	+	879.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 1 of 19)	intron (NM_175344, intron 1 of 19)	1640.0	NM_001253813	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-64922664-1	chr13	64922564	64922764	+	597.5	f0_balb.idr	exon (NM_030047, exon 3 of 3)	exon (NM_030047, exon 3 of 3)	5258.0	NM_030047	78124.0	Mm.342895	NM_030047	ENSMUSG00000056223	Spata31	4930458L03Rik|Aep1|Fam75a|Spata31a|Vad1.3	spermatogenesis associated 31	protein-coding	0.272187977742315	0.290576335587061	0.597429950560696	0.279890438914743	0.640946707087936	0.638137366240116	0.842151144184527	0.576028170197465	2.43067894744244	0.192455809138872	1
Merged-chr16-93607869-4	chr16	93607785	93607985	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007620)	promoter-TSS (NM_007620)	48.0	NM_007620	12408.0	Mm.26940	NM_007620	ENSMUSG00000051483	Cbr1	AW261796|CR|Cbr	carbonyl reductase 1	protein-coding	3.4434525624737	3.52554232537882	3.09157115869453	3.21301210292422	4.06198600476173	4.58669792227478	3.11716659865452	3.32519959115505	0.853478199874527	0.128070826433847	0.559983154356158
Merged-chr9-65364366-3	chr9	65364265	65364465	+	970.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111145, intron 1 of 6)	intron (NM_001111145, intron 1 of 6)	3305.0	NM_001111145	208080.0	Mm.291862	NM_001111145	ENSMUSG00000086228	Ubap1l	Gm514	ubiquitin-associated protein 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-121849626-2	chr5	121849526	121849726	+	780.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359950, intron 1 of 2)	B1_Mus2|SINE|Alu	629.0	NM_001359949	231717.0	Mm.12654	NM_175474	ENSMUSG00000044134	Fam109a	A230106M15Rik|AU017694|IPIP27A|Ses1	family with sequence similarity 109, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-59889543-3	chr10	59889438	59889638	+	810.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019965, intron 1 of 8)	intron (NM_019965, intron 1 of 8)	9947.0	NM_019965	56709.0	Mm.103610	NM_019965	ENSMUSG00000020109	Dnajb12	Dj10|mDj10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-73643749-2	chr15	73643649	73643849	+	632.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19005.0	NM_001033219	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-48557996-4	chr17	48557896	48558096	+	790.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	103095.0	NM_152823	76589.0	Mm.311629	NM_152823	ENSMUSG00000043592	Unc5cl	2510009H09Rik|BB155270|Zud	unc-5 family C-terminal like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-26639675-4	chr11	26639587	26639787	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	-45767.0	NM_001252447	69922.0	Mm.285351	NM_027260	ENSMUSG00000064090	Vrk2	2810003O05Rik|AI447698	vaccinia related kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5402862-4	chr17	5402746	5402946	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15921.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-155812275-2	chr1	155812175	155812375	+	995.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001024945, intron 1 of 11)	intron (NM_001024945, intron 1 of 11)	624.0	NM_023268	104009.0	Mm.27035	NM_023268	ENSMUSG00000033684	Qsox1	1300003H02Rik|QSOX|Qscn6|SOx|b2b2673Clo	quiescin Q6 sulfhydryl oxidase 1	protein-coding	1.93200663219291	1.7647126041023	1.02456274477841	1.0105701727844	1.78220659497493	1.47451085352777	1.83524392910044	1.66249400895438	0.577564396736949	0.632760443541794	0.982230082053879
Merged-chr2-166744658-4	chr2	166744561	166744761	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30829.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139024659-4	chr5	139024558	139024758	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359099, intron 9 of 10)	intron (NM_001359099, intron 9 of 10)	-29705.0	NM_008808	18590.0	Mm.2675	NM_008808	ENSMUSG00000025856	Pdgfa	-	platelet derived growth factor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-112180340-4	chr7	112180230	112180430	+	726.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20848.0	NM_001360257	50781.0	Mm.55143	NM_015814	ENSMUSG00000030772	Dkk3	AW061014|C87148|dkk-3|mDkk-3	dickkopf WNT signaling pathway inhibitor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-18006557-3	chr5	18006449	18006649	+	755.766663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081143, intron 5 of 7)	intron (NM_001081143, intron 5 of 7)	43979.0	NM_001081143	242851.0	Mm.332230	NM_001081143	ENSMUSG00000028777	Gnat3	Ggust|Gtn	guanine nucleotide binding protein, alpha transducing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47275841-4	chr17	47275760	47275960	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001097623, intron 4 of 19)	intron (NM_001097623, intron 4 of 19)	45630.0	NM_172622	224829.0	Mm.260989	NM_172622		Trerf1	9430096I18Rik|AI429294|B830015H24|RAPA|Trep-132|Trep132	transcriptional regulating factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-6258154-3	chr2	6258056	6258256	+	709.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040333, intron 3 of 6)	intron (NR_040333, intron 3 of 6)	-45162.0	NM_024208	67856.0	Mm.38342	NM_024208	ENSMUSG00000039063	Echdc3	2310005D12Rik|AI662097	enoyl Coenzyme A hydratase domain containing 3	protein-coding	1.65420797897731	1.85955528930174	1.08805373077324	1.4614324679912	1.87619234097521	2.21982893489643	2.0417689177662	1.2899258721945	1.08588807134576	0.324759787417516	0.827392680372739
Merged-chr1-167287291-1	chr1	167287191	167287391	+	547.0	f1_c57bl6.idr	Intergenic	Intergenic	-2164.0	NM_030724	80914.0	Mm.280895	NM_030724	ENSMUSG00000026558	Uck2	AA407809|AI481316|AU018180|AU020720|TSA903|UK|UMK|Umpk	uridine-cytidine kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-122230911-4	chr9	122230856	122231056	+	867.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271873, intron 11 of 12)	intron (NM_001271873, intron 11 of 12)	43072.0	NR_106185	102465896.0		NR_106185	ENSMUSG00000098922	Mir8106	Gm27594|mmu-mir-8106	microRNA 8106	ncRNA	3.20731840066696	3.87263605515369	3.11305570810206	3.65076186773805	2.54548882474242	2.71619048530276	3.41891085156868	3.60579465308261	-0.552140078681953	0.362814572619333	0.858437363282271
Merged-chr17-33779002-2	chr17	33778915	33779115	+	765.666626	f0_balb.idr|f1_c57bl6.idr	intron (NM_020581, intron 3 of 6)	intron (NM_020581, intron 3 of 6)	2560.0	NM_020581	57875.0	Mm.196189	NM_020581	ENSMUSG00000002289	Angptl4	Arp4|Bk89|Fiaf|Hfarp|Ng27|Pgar|Pgarg|Pp1158	angiopoietin-like 4	protein-coding	2.80251824899489	3.06752631470297	1.39328270172916	2.62538094392121	2.5088855485096	2.59730868265926	1.40238968826505	2.73121482209283	-0.4135608953739	0.657142222306337	0.988679867484296
Merged-chr4-80311302-4	chr4	80311199	80311399	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-522914.0	NM_031202	22178.0	Mm.30438	NM_031202	ENSMUSG00000005994	Tyrp1	Oca3|TRP-1|TRP1|Tyrp|b|brown|isa	tyrosinase-related protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45526296-4	chr7	45526198	45526398	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_148927)	promoter-TSS (NM_148927)	-30.0	NM_008654	17872.0	Mm.4048	NM_008654	ENSMUSG00000040435	Ppp1r15a	9630030H21|Gadd34|Myd116	protein phosphatase 1, regulatory (inhibitor) subunit 15A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-103015095-2	chr14	103014995	103015195	+	624.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045657, intron 2 of 2)	RMER1B|Other|Other	18708.0	NR_045657	71264.0	Mm.399572	NR_045657	ENSMUSG00000114980	4933432I03Rik	-	RIKEN cDNA 4933432I03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141458911-2	chr7	141458811	141459011	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001163689, exon 7 of 9)	exon (NM_001163689, exon 7 of 9)	-2183.0	NM_001025103	213573.0	Mm.386851	NM_001025103	ENSMUSG00000048200	Cracr2b	6330520A15Rik|BC026645|Cracr2a|Efcab4|Efcab4a	calcium release activated channel regulator 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116411940-2	chr11	116411840	116412040	+	609.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_027258, intron 1 of 18)	intron (NM_027258, intron 1 of 18)	1092.0	NM_027258	217340.0	Mm.426344	NM_027258	ENSMUSG00000052949	Rnf157	2610036E23Rik|A130073L17Rik|mKIAA1917	ring finger protein 157	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-101943149-2	chr14	101943049	101943249	+	812.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	102526.0	NM_001347628	380928.0	Mm.218981	NM_201529	ENSMUSG00000033060	Lmo7	C78582|FBXO20|Gm914|mKIAA0858	LIM domain only 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-20611589-4	chr16	20611462	20611662	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177940)	promoter-TSS (NM_177940)	-39.0	NM_177940	110599584.0	Mm.263319	NM_177940		Eef1akmt4-ece2	Eef1akmt4	Eef1akmt4-Ece2 readthrough	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-69528606-2	chr13	69528534	69528734	+	671.5	f0_balb.idr|f1_balb.idr	intron (NM_198600, intron 1 of 12)	intron (NM_198600, intron 1 of 12)	5230.0	NM_198600	210106.0	Mm.315959	NM_198600	ENSMUSG00000034575	Papd7	LAK-1|POLK|Pols|TRF4|TRF4-1	PAP associated domain containing 7	protein-coding	0.16969534563829	0.0451805923512564	0.0397623454567838	0.335183346583003	0.504336948011651	0.0464023389526813	0.0409571516810821	0.751216552444407	1.73023135329962	0.410016509262837	1
Merged-chr17-31113949-2	chr17	31113849	31114049	+	569.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009593, intron 14 of 14)	intron (NM_009593, intron 14 of 14)	15662.0	NM_011575	21786.0	Mm.4641	NM_011575	ENSMUSG00000024029	Tff3	ITF|mITF	trefoil factor 3, intestinal	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-79219838-2	chr11	79219738	79219938	+	648.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	23186.0	NM_001042565	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-36932814-4	chr19	36932718	36932918	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080706, intron 1 of 37)	intron (NM_001080706, intron 1 of 37)	6739.0	NM_001080706	107182.0	Mm.295062	NM_001080706	ENSMUSG00000040565	Btaf1	AI414500|AI447930|E430027O22Rik|TAF170	B-TFIID TATA-box binding protein associated factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-32226033-2	chr19	32225933	32226133	+	675.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 4 of 9)	ORR1B2|LTR|ERVL-MaLR	-15020.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-90034108-4	chr7	90033992	90034192	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110365, intron 1 of 5)	intron (NR_110365, intron 1 of 5)	4933.0	NR_110364	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	5.04718683610789	5.34964746610754	5.56796765004822	4.54790059450725	4.5379493413819	5.08477737487165	5.41515245002591	4.87415180969999	-0.196455861221642	0.570136821700242	0.962718661854691
Merged-chr3-27285166-2	chr3	27285066	27285266	+	650.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31911.0	NM_009425	22035.0	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-147054741-3	chr1	147054636	147054836	+	845.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	557049.0	NM_001145807	215378.0	Mm.441817	NM_153539	ENSMUSG00000035131	Brinp3	B830045N13Rik|Fam5c	bone morphogenetic protein/retinoic acid inducible neural specific 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-10480628-2	chr16	10480528	10480728	+	979.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001243760, intron 1 of 18)	intron (NM_001243760, intron 1 of 18)	556.0	NM_001302618	12265.0	Mm.249560	NM_007575	ENSMUSG00000022504	Ciita	C2ta|EG669998|Gm9475|Mhc2ta	class II transactivator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-76374701-2	chr12	76374601	76374801	+	640.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178744, intron 1 of 1)	intron (NM_178744, intron 1 of 1)	4435.0	NM_178744	268564.0	Mm.77065	NM_178744	ENSMUSG00000033454	Zbtb1	9430077A12|AI256369|Bsg2|C430003J21Rik	zinc finger and BTB domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-24663652-3	chr6	24663493	24663693	+	800.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028459, intron 1 of 10)	intron (NM_028459, intron 1 of 10)	1402.0	NM_001167745	73178.0	Mm.1574	NM_028459	ENSMUSG00000029684	Wasl	2900021I12Rik|3110031I02Rik|N-WASP	Wiskott-Aldrich syndrome-like (human)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-80670619-4	chr1	80670551	80670751	+	804.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175291, intron 1 of 55)	MTE2a|LTR|ERVL-MaLR	-5299.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-19850820-3	chr4	19850614	19850814	+	833.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C2|LTR|ERVK	31987.0	NM_028746	74087.0	Mm.173833	NM_028746	ENSMUSG00000041052	Slc7a13	0610009O04Rik|AGT-1|AGT1|XAT2	solute carrier family 7, (cationic amino acid transporter, y+ system) member 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-93635136-6	chr1	93635007	93635207	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021537, intron 2 of 11)	CpG	620.0	NM_021537	59041.0	Mm.28761	NM_021537	ENSMUSG00000026277	Stk25	1500019J11Rik|AU018434|C86992|Ste20-like|Ysk1	serine/threonine kinase 25 (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-117928962-2	chr4	117928864	117929064	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001284193, intron 2 of 4)	intron (NM_001284193, intron 2 of 4)	799.0	NM_001284191	11876.0	Mm.56897	NM_009711	ENSMUSG00000028539	Artn	neublastin	artemin	protein-coding	-0.799902186879656	-0.429140330751189	-0.216478800392019	-0.795762741921423	-0.799286726000797	-0.788015448494407	-0.792553219016262	-0.795326855369012	-3.13842637334584	0.284211766590417	1
Merged-chr18-12955793-4	chr18	12955728	12955928	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13987.0	NM_207530	64291.0	Mm.259470	NM_020573	ENSMUSG00000044252	Osbpl1a	G430090F17Rik|Gm753|ORP-1|Osbpl1b	oxysterol binding protein-like 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-83596566-2	chr12	83596466	83596666	+	891.5	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001359167, exon 2 of 13)	5' UTR (NM_001359167, exon 2 of 13)	656.0	NM_001359167	217695.0	Mm.59257	NM_183154	ENSMUSG00000042628	Zfyve1	DFCP1|G630053K23|TAFF1|ZNFN2A1|mKIAA1589	zinc finger, FYVE domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-25089752-3	chr5	25089659	25089859	+	582.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145401, intron 1 of 15)	intron (NM_145401, intron 1 of 15)	10883.0	NM_145401	108099.0	Mm.33649	NM_145401	ENSMUSG00000028944	Prkag2	2410051C13Rik|AAKG|AAKG2|AI854673|H91620p|WPWS	protein kinase, AMP-activated, gamma 2 non-catalytic subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-78891227-4	chr17	78891140	78891340	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163625, intron 4 of 6)	MTE2a|LTR|ERVL-MaLR	-8668.0	NM_011163	19106.0	Mm.378990	NM_011163	ENSMUSG00000024079	Eif2ak2	2310047A08Rik|4732414G15Rik|AI467567|AI747578|Pkr|Prkr|Tik	eukaryotic translation initiation factor 2-alpha kinase 2	protein-coding	4.8088297653794	4.83401935132606	5.0913137123584	4.2822697220431	4.46767745030306	3.96313298747331	4.48504593185953	3.20292377520537	-0.836635348770765	0.04974948992679	0.325105871536834
Merged-chr2-181595185-2	chr2	181595085	181595285	+	647.666626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_172676)	TTS (NM_172676)	-2724.0	NM_001164597	269401.0	Mm.386888	NM_001164597	ENSMUSG00000000823	Zfp512b	Gm632|Znf512b	zinc finger protein 512B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-45047471-5	chr14	45047352	45047552	+	866.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	59341.0	NM_008964	19217.0	Mm.4630	NM_008964	ENSMUSG00000037759	Ptger2	EP2|Ptgerep2	prostaglandin E receptor 2 (subtype EP2)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-57926144-4	chr15	57926020	57926220	+	999.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356310, intron 3 of 19)	RSINE1|SINE|B4	13921.0	NM_001356310	210544.0	Mm.390835	NM_199300	ENSMUSG00000022364	Tbc1d31	4B3|D330013L20Rik|Gm85|Wdr67	TBC1 domain family, member 31	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-91045612-2	chr1	91045512	91045712	+	676.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111312, intron 1 of 12)	intron (NM_001111312, intron 1 of 12)	-7832.0	NM_001111311	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-145095179-2	chr7	145095079	145095279	+	760.916626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	112940.0	NR_033626	100040049.0	Mm.102235	NR_033626	ENSMUSG00000109305	1810010D01Rik	Gm2572	RIKEN cDNA 1810010D01 gene	ncRNA	-1.56355737717652	-1.81244775989375	-1.82128546162293	-1.82854501295842	-1.83962066705452	-1.81053259306168	-1.81928479966835	-1.82724555674025	-1.28500227969968	0.715751224811686	1
Merged-chr19-41774617-1	chr19	41774517	41774717	+	1000.0	f0_c57.idr	intron (NM_027667, intron 9 of 11)	intron (NM_027667, intron 9 of 11)	27467.0	NM_001163495	71085.0	Mm.21646	NM_027667	ENSMUSG00000025154	Arhgap19	4933411B03Rik|AI120128|AW546831|mFLJ00368	Rho GTPase activating protein 19	protein-coding	6.30867107769111	6.23383544123004	5.5817332081765	5.52396679056514	3.94593306192249	4.05896935895337	3.50883708165411	5.39423252286681	-1.76442859326409	1.01275108057432e-05	0.000467345671720411
Merged-chr14-55879803-4	chr14	55879708	55879908	+	904.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_019820, exon 3 of 3)	3' UTR (NM_019820, exon 3 of 3)	4448.0	NM_019820	56410.0	Mm.97163	NM_019820	ENSMUSG00000040380	Cbln3	-	cerebellin 3 precursor protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-84306300-2	chr11	84306200	84306400	+	885.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133360, intron 33 of 53)	intron (NM_133360, intron 33 of 53)	110862.0	NM_133360	107476.0	Mm.31374	NM_133360	ENSMUSG00000020532	Acaca	A530025K05Rik|Acac|Acc1|Gm738	acetyl-Coenzyme A carboxylase alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-100143947-4	chr6	100143858	100144058	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	143400.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-59209439-4	chr6	59209357	59209557	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001081145, exon 2 of 2)	5' UTR (NM_001081145, exon 2 of 2)	587.0	NM_001081145	68140.0	Mm.25843	NM_001081145	ENSMUSG00000049232	Tigd2	3632410O17Rik	tigger transposable element derived 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-163417787-2	chr2	163417687	163417887	+	660.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_025699, intron 1 of 3)	RSINE1|SINE|B4	1683.0	NM_025699	66680.0	Mm.25119	NM_025699	ENSMUSG00000035399	Oser1	3230401D17Rik|AI256769|Perit1	oxidative stress responsive serine rich 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-118862375-2	chr10	118862275	118862475	+	683.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001014390, intron 2 of 2)	MTEa|LTR|ERVL-MaLR	6528.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-100104043-4	chr13	100103917	100104117	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081061)	promoter-TSS (NM_001081061)	53.0	NM_001081061	544971.0	Mm.288546	NM_001081061	ENSMUSG00000049658	Bdp1	AI662220|AW049390|AW456745|B130055N23Rik|G630013P12Rik|TAF3B1|TFC5|TFIIIB150|TFIIIB90|Tfnr|mKIAA1241	B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-115898809-2	chr13	115898709	115898909	+	570.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3_Mus|LINE|L1	410879.0	NM_021459	16392.0	Mm.42242	NM_021459	ENSMUSG00000042258	Isl1	-	ISL1 transcription factor, LIM/homeodomain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47745079-2	chr17	47744979	47745179	+	600.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161723, intron 1 of 8)	intron (NM_001161723, intron 1 of 8)	7148.0	NM_001161723	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31664353-3	chr14	31664258	31664458	+	660.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025295, intron 2 of 3)	LTR37B|LTR|ERV1	23301.0	NM_025295	26363.0	Mm.282679	NM_025295	ENSMUSG00000021900	Btd	-	biotinidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-117114387-2	chr5	117114287	117114487	+	566.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001122666, intron 1 of 12)	RMER6A|LTR|ERVK	1606.0	NM_001122666	71954.0	Mm.34456	NM_178622	ENSMUSG00000066900	Suds3	2400003N08Rik|2410008L21Rik|AU067672|mSds3	suppressor of defective silencing 3 homolog (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118971736-2	chr11	118971636	118971836	+	677.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16445.0	NM_001359574	238011.0	Mm.244114	NM_001030291	ENSMUSG00000046697	Enpp7	Alk-SMase|Gm254	ectonucleotide pyrophosphatase/phosphodiesterase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-37679594-2	chr13	37679494	37679694	+	676.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-146444.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-70709381-3	chr17	70709261	70709461	+	985.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360665, intron 9 of 14)	intron (NM_001360665, intron 9 of 14)	137416.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	1.97147199238185	2.03810419283583	1.42624718934217	3.5786908047597	3.19982464706543	2.44977296346475	2.77501961030326	3.91902824135377	1.12481311405499	0.187641329725952	0.665152848350986
Merged-chr10-117629414-4	chr10	117629347	117629547	+	966.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027468)	promoter-TSS (NM_027468)	-53.0	NM_027468	70574.0	Mm.339332	NM_027468	ENSMUSG00000020183	Cpm	1110060I01Rik|5730456K23Rik|AA589379|E030045M14Rik	carboxypeptidase M	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-13192323-4	chr4	13192113	13192313	+	989.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	285376.0	NM_001171801	208820.0	Mm.12057	NM_173746	ENSMUSG00000055963	Triqk	C130086A10|Gm11818	triple QxxK/R motif containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167279061-6	chr2	167278763	167278963	+	829.444458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38326.0	NM_008968	19223.0	Mm.2339	NM_008968	ENSMUSG00000017969	Ptgis	Cyp8|Cyp8a1|Pgis	prostaglandin I2 (prostacyclin) synthase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65676519-4	chr9	65676435	65676635	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010952)	promoter-TSS (NM_010952)	-13.0	NM_010952	18247.0	Mm.116749	NM_010952	ENSMUSG00000040652	Oaz2	AZ-2|AZ2|Oaz2-ps|Sez15	ornithine decarboxylase antizyme 2	protein-coding	4.65994865758202	4.57123350340353	4.78393646304928	3.7510171936799	4.693802930343	4.43688227616421	3.53063520409923	3.91854727114062	-0.350315387765779	0.43142565357391	0.904679012727573
Merged-chr4-141271835-4	chr4	141271755	141271955	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6584.0	NR_151527	100503810.0		NR_151527	ENSMUSG00000085395	Gm13056	-	predicted gene 13056	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27302870-2	chr2	27302770	27302970	+	608.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_133905, intron 3 of 29)	ORR1D1|LTR|ERVL-MaLR	-55567.0	NM_138665	192166.0	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-27175416-2	chr3	27175316	27175516	+	787.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-7588.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-130001948-1	chr4	130001848	130002048	+	557.0	f0_c57.idr	intron (NM_001199696, intron 2 of 28)	intron (NM_001199696, intron 2 of 28)	9894.0	NM_001290715	230775.0	Mm.262241	NM_173071	ENSMUSG00000028782	Adgrb2	Bai2	adhesion G protein-coupled receptor B2	protein-coding	1.15123588483982	2.19423750610993	1.70596053754887	2.18634847370274	1.16180808427633	0.835789271592304	0.815021768674599	0.796697901656433	-3.85067090350523	0.00806626663578323	0.0934732723787708
Merged-chr7-114193129-2	chr7	114193029	114193229	+	660.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	61551.0	NM_033370	70349.0	Mm.277024	NM_033370	ENSMUSG00000030754	Copb1	2610019B04Rik	coatomer protein complex, subunit beta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-58322771-3	chr14	58322621	58322821	+	739.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	250035.0	NM_013518	14180.0	Mm.8846	NM_013518	ENSMUSG00000021974	Fgf9	Eks	fibroblast growth factor 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-20666757-4	chr10	20666653	20666853	+	972.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013875, intron 1 of 12)	intron (NM_013875, intron 1 of 12)	58325.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97419486-2	chr6	97419386	97419586	+	622.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 4 of 23)	intron (NM_145148, intron 4 of 23)	39800.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4878313-10	chr16	4878258	4878458	+	927.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145359, intron 1 of 2)	intron (NM_145359, intron 1 of 2)	1493.0	NM_145359	207740.0	Mm.268895	NM_145359	ENSMUSG00000039568	Ubald1	1500031H01Rik|BC013706|Fam100a	UBA-like domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-82203691-2	chr2	82203590	82203790	+	565.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_175513, intron 1 of 3)	L1Md_F2|LINE|L1	150032.0	NM_175513	241514.0	Mm.119383	NM_175513	ENSMUSG00000070866	Zfp804a	C630007C17Rik|Znf804a	zinc finger protein 804A	protein-coding	-1.10262295305493	-1.0808548865726	-1.09209159927202	-0.933629306001664	-1.10213768760223	-1.07841984405556	-1.0895478538186	-0.557227009491809	1.70342206228902	0.599203224400871	1
Merged-chr10-68176496-3	chr10	68176397	68176597	+	865.511108	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023598, intron 4 of 9)	intron (NM_023598, intron 4 of 9)	102229.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	0.40161801925888	0.155421943272904	0.904786870125549	0.144941055902491	0.517964250309985	0.351679395771345	0.32969032547068	0.145738677565092	-0.719334838959392	0.70543256686877	1
Merged-chr13-43171535-4	chr13	43171481	43171681	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025935)	promoter-TSS (NM_025935)	-80.0	NM_001252640	67046.0	Mm.269213	NM_025935	ENSMUSG00000021368	Tbc1d7	2610009C09Rik	TBC1 domain family, member 7	protein-coding	2.99080979537784	2.40524799699442	2.75194428192328	2.78623505287697	3.28028521582759	2.73621888124447	3.17534167055161	3.23641036473534	0.683063079016942	0.293550484064259	0.797871061600232
Merged-chr9-40392558-4	chr9	40392421	40392621	+	986.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357617, intron 2 of 20)	intron (NM_001357617, intron 2 of 20)	-16104.0	NM_001357621	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101895288-2	chr7	101895188	101895388	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291352, intron 1 of 5)	B4A|SINE|B4	-1043.0	NM_001291348	75430.0	Mm.284491	NM_027532	ENSMUSG00000030649	Anapc15	3200002M19Rik|6330414C15Rik|APC15	anaphase prompoting complex C subunit 15	protein-coding	2.66890087496423	2.77994948444722	1.42738565246709	1.11883091817773	2.69256023699571	2.80192003725609	1.43901219816132	1.12409513995173	0.0406631600889603	0.971228849026598	0.998431161219273
Merged-chr1-106815482-4	chr1	106815410	106815610	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18785.0	NM_009190	20479.0	Mm.18705	NM_009190	ENSMUSG00000009907	Vps4b	8030489C12Rik|Skd1	vacuolar protein sorting 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-70473263-2	chr12	70473163	70473363	+	655.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_037248, intron 2 of 4)	B1_Mus2|SINE|Alu	20109.0	NM_028339	72736.0	Mm.204670	NM_028339	ENSMUSG00000021072	Tmx1	2810425A04Rik|AI465319|Txndc1	thioredoxin-related transmembrane protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-29908648-4	chr7	29908553	29908753	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001243908, intron 1 of 4)	intron (NM_001243908, intron 1 of 4)	136.0	NM_001243908	73729.0	Mm.333743	NM_001243908	ENSMUSG00000099689	Zfp383	1110003H10Rik	zinc finger protein 383	protein-coding	5.59535494573598	5.62499148700086	5.54862066930628	5.87877783567129	5.65338603589248	6.27179484742352	5.63978745100558	5.13073615821643	0.0640266198691031	0.821631032194083	0.998431161219273
Merged-chr9-38727685-1	chr9	38727585	38727785	+	540.0	f1_balb.idr	intron (NM_001145957, intron 7 of 18)	RMER17C|LTR|ERVK	9417.0	NM_172767	67776.0	Mm.290950	NM_172767	ENSMUSG00000023186	Vwa5a	5830475I06Rik|AW552491|BCSC-1|E130119J22|Loh11cr2a	von Willebrand factor A domain containing 5A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99972781-4	chr15	99972645	99972845	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001284523)	promoter-TSS (NM_001284523)	-35.0	NM_001024526	207214.0	Mm.28811	NM_001024526	ENSMUSG00000023025	Larp4	DXErtd793|DXErtd793e	La ribonucleoprotein domain family, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55850820-3	chr19	55850746	55850946	+	787.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_138565, intron 4 of 15)	intron (NR_138565, intron 4 of 15)	-44475.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-28050232-4	chr3	28050148	28050348	+	841.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008875, intron 11 of 25)	intron (NM_008875, intron 11 of 25)	66077.0	NM_008875	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-55877380-2	chr17	55877280	55877480	+	690.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_144546, intron 1 of 3)	ORR1B1|LTR|ERVL-MaLR	1573.0	NM_144546	104349.0	Mm.460659	NM_144546	ENSMUSG00000057835	Zfp119a	AL024077|Mzf13|Zfp119	zinc finger protein 119a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-10832165-6	chr8	10832106	10832306	+	944.388916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CCCCCA)n|Simple_repeat|Simple_repeat	50248.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-42527846-2	chr13	42527746	42527946	+	882.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-152953.0	NM_001302635	218194.0	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36552152-2	chr1	36552052	36552252	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001304329, intron 10 of 14)	intron (NM_001304329, intron 10 of 14)	-4900.0	NR_132321	109346.0	Mm.247537	NM_026241	ENSMUSG00000079610	Ankrd39	9130416N05Rik|C030004B10Rik	ankyrin repeat domain 39	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140841686-2	chr5	140841586	140841786	+	552.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11255.0	NM_010302	14673.0	Mm.370185	NM_010302	ENSMUSG00000000149	Gna12	AI414047|AI504261|Galpha12	guanine nucleotide binding protein, alpha 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-19198920-2	chr3	19198820	19199020	+	606.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356295, intron 1 of 7)	intron (NM_001356295, intron 1 of 7)	10625.0	NM_001356295	67472.0	Mm.45125	NM_026182	ENSMUSG00000027601	Mtfr1	1300002C08Rik|1700080D04Rik|2810026O10Rik|4930579E05Rik|Chppr|Fam54a2	mitochondrial fission regulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-184484780-5	chr1	184484643	184484843	+	916.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	72948.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-24095008-4	chr13	24094916	24095116	+	883.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026825, intron 21 of 37)	MIR|SINE|MIR	-103802.0	NM_145399	214189.0	Mm.255667	NM_145399	ENSMUSG00000021337	Scgn	-	secretagogin, EF-hand calcium binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44435964-4	chr9	44435868	44436068	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001033469, exon 3 of 5)	exon (NM_001033469, exon 3 of 5)	4900.0	NM_001033469	382074.0	Mm.335103	NM_001033469	ENSMUSG00000074397	Foxr1	Foxn5|Gm1115	forkhead box R1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-88546368-4	chr9	88546272	88546472	+	942.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F2|LTR|ERVL-MaLR	-1648.0	NM_001163061	71640.0	Mm.259988	NM_001142943	ENSMUSG00000032425	Zfp949	4930422I07Rik|Nczf	zinc finger protein 949	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-10232431-4	chr1	10232277	10232477	+	985.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001102430, exon 1 of 38)	exon (NM_001102430, exon 1 of 38)	293.0	NM_001102430	211673.0	Mm.229141	NM_001102430	ENSMUSG00000067851	Arfgef1	ARFGEP1|BIG1|D130059B05Rik|D730028O18Rik|P200	ADP-ribosylation factor guanine nucleotide-exchange factor 1(brefeldin A-inhibited)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-24381522-2	chr5	24381422	24381622	+	671.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008713, exon 21 of 26)	exon (NM_008713, exon 21 of 26)	10621.0	NM_001002897	213948.0	Mm.332252	NM_001002897	ENSMUSG00000038295	Atg9b	Apg912|Apg9l2|Apgdc2|Gm574|Nos3as|eONE|sONE	autophagy related 9B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-47393533-3	chr14	47393462	47393662	+	726.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144553, intron 15 of 18)	intron (NM_144553, intron 15 of 18)	19702.0	NM_001145953	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-23662940-2	chr11	23662840	23663040	+	592.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023651, intron 1 of 3)	B4A|SINE|B4	-2734.0	NM_028956	74467.0	Mm.29536	NM_028304	ENSMUSG00000020280	Pus10	2810013G11Rik|4933435A13Rik|AU014648|C77560|Ccdc139	pseudouridylate synthase 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-90266030-4	chr9	90265930	90266130	+	814.291687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 1 of 12)	intron (NM_194334, intron 1 of 12)	4739.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83272373-4	chr11	83272366	83272566	+	674.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	14260.0	NM_001166028	237890.0	Mm.297670	NM_001166028	ENSMUSG00000082101	Slfn14	Gm20|Slfn14-ps	schlafen 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-53511780-4	chr8	53511696	53511896	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001205054)	promoter-TSS (NM_001205054)	94.0	NM_001005847	11593.0	Mm.334535	NM_001005847	ENSMUSG00000031521	Aga	AW060726	aspartylglucosaminidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3723005-4	chr4	3722906	3723106	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 1 of 12)	intron (NM_001111096, intron 1 of 12)	8042.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-161286929-3	chr1	161286823	161287023	+	774.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35713.0	NM_001303408	11758.0	Mm.186185	NM_007453	ENSMUSG00000026701	Prdx6	1-Cys Prx|1-cysPrx|9430088D19Rik|AA690119|Aop2|Brp-12|CP-3|GPx|Ltw-4|Ltw4|Lvtw-4|NSGPx|ORF06|Prdx5|aiPLA2	peroxiredoxin 6	protein-coding	3.82283244923676	4.52355767149681	3.65177556816496	3.22657329549727	3.16587258789915	2.7050769752365	1.68070667121324	3.7025624341003	-1.3229730074289	0.0453281791805923	0.306522992005731
Merged-chr15-50870924-4	chr15	50870829	50871029	+	929.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_032000, intron 1 of 5)	intron (NM_032000, intron 1 of 5)	18120.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5210374-2	chr17	5210274	5210474	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 4 of 19)	intron (NM_001085355, intron 4 of 19)	208393.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-85087578-1	chr1	85087478	85087678	+	967.7999880000001	f1_balb.idr	TTS (NM_213615)	TTS (NM_213615)	22275.0	NM_213615	381287.0	Mm.487565	NM_213615	ENSMUSG00000089844	A530032D15Rik	Gm1888	RIKEN cDNA A530032D15Rik gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-119091954-2	chr9	119091854	119092054	+	796.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019676, intron 1 of 14)	intron (NM_019676, intron 1 of 14)	1548.0	NR_121571	18799.0	Mm.23963	NM_019676	ENSMUSG00000010660	Plcd1	AW212592|C79986	phospholipase C, delta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-145924123-4	chr3	145924034	145924234	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009740)	promoter-TSS (NM_009740)	-128.0	NM_009740	12042.0	Mm.239141	NM_009740	ENSMUSG00000028191	Bcl10	AI132454|BCL-10|C81403|CARMEN|CIPER|CLAP|ME10|cE10	B cell leukemia/lymphoma 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167642443-2	chr2	167642343	167642543	+	736.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_145538)	TTS (NM_145538)	-10438.0	NM_023230	66589.0	Mm.278783	NM_023230	ENSMUSG00000078923	Ube2v1	0610011J09Rik|AI256840|CROC-1|CROC1|D7Bwg1382e|UEV-1	ubiquitin-conjugating enzyme E2 variant 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-105032526-2	chr5	105032430	105032630	+	881.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_029509, intron 3 of 9)	RLTR13C2|LTR|ERVK	21031.0	NM_029509	76074.0	Mm.458519	NM_029509	ENSMUSG00000034438	Gbp8	5830443L24Rik|mGBP8	guanylate-binding protein 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83456003-4	chr6	83455888	83456088	+	953.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347313, intron 1 of 11)	CpG	404.0	NM_001347313	194388.0	Mm.211030	NM_183138	ENSMUSG00000034832	Tet3	B430006D22Rik|BC037432|D230004J03Rik	tet methylcytosine dioxygenase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53412167-4	chr4	53412054	53412254	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28259.0	NM_001159633	100434.0	Mm.482207	NM_133891	ENSMUSG00000028412	Slc44a1	2210409B22Rik|4833416H08Rik|AW547365|CHTL1|CTL1|Cdw92	solute carrier family 44, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-25507460-2	chr14	25507360	25507560	+	549.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 2 of 23)	intron (NM_183208, intron 2 of 23)	-26979.0	NR_037236	100526533.0		NR_037236	ENSMUSG00000093081	Mir3075	mir-3075|mmu-mir-3075	microRNA 3075	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-72838249-4	chr2	72838135	72838335	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24518.0	NR_102349	76218.0	Mm.75260	NR_102348	ENSMUSG00000085427	6430710C18Rik	5033406J01Rik	RIKEN cDNA 6430710C18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-33878404-4	chr1	33878319	33878519	+	993.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177235, exon 3 of 7)	exon (NM_177235, exon 3 of 7)	29202.0	NM_177235	320705.0	Mm.336619	NM_177235	ENSMUSG00000042182	Bend6	B230209C24Rik	BEN domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-87327392-3	chr1	87327291	87327491	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146112, intron 1 of 28)	CpG	393.0	NM_001110212	227331.0	Mm.23065	NM_146112	ENSMUSG00000048000	Gigyf2	2610016F01Rik|A830080H02Rik|AI852361|AW259676|BC006835|Tnrc15|mKIAA0642	GRB10 interacting GYF protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-95276780-2	chr15	95276680	95276880	+	663.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356950, intron 16 of 20)	intron (NM_001356950, intron 16 of 20)	-127462.0	NR_015482	100043315.0	Mm.159041	NR_015482	ENSMUSG00000100603	LOC100043315	-	uncharacterized LOC100043315	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-132685949-2	chr7	132685849	132686049	+	687.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029609, intron 6 of 6)	intron (NM_029609, intron 6 of 6)	75306.0	NM_029609	76429.0	Mm.276721	NM_029609	ENSMUSG00000030946	Lhpp	2310007H09Rik	phospholysine phosphohistidine inorganic pyrophosphate phosphatase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-10876520-4	chr15	10876443	10876643	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F1|LTR|ERVL-MaLR	47492.0	NR_040357	100502601.0	Mm.399434	NR_040357		Gm19276	-	predicted gene, 19276	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-21679213-1	chr4	21679113	21679313	+	604.5	f0_balb.idr	exon (NM_001080771, exon 4 of 4)	exon (NM_001080771, exon 4 of 4)	6750.0	NM_001080771	230025.0	Mm.208541	NM_001080771	ENSMUSG00000040478	Prdm13	-	PR domain containing 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-54655912-1	chr6	54655812	54656012	+	729.666687	f0_balb.idr	Intergenic	Intergenic	-25712.0	NM_001289741	68235.0	Mm.233860	NM_026629	ENSMUSG00000038065	Mturn	2410066E13Rik|AI448550|B230212L03Rik	maturin, neural progenitor differentiation regulator homolog (Xenopus)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-104109072-2	chr8	104108972	104109172	+	592.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_009868, intron 1 of 11)	LTR33|LTR|ERVL	-3199.0	NR_131138	546096.0	Mm.252264	NR_131138	ENSMUSG00000110053	Gm29682	Gm45664	predicted gene, 29682	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-65360687-4	chr3	65360599	65360799	+	837.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357358, intron 11 of 13)	intron (NM_001357358, intron 11 of 13)	-11270.0	NR_040390	319798.0	Mm.445698	NR_040390		A730090N16Rik	-	RIKEN cDNA A730090N16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-116335430-1	chr7	116335330	116335530	+	583.0	f1_balb.idr	Intergenic	Intergenic	-1240.0	NM_026533	68052.0	Mm.14798	NM_026533	ENSMUSG00000090862	Rps13	2700063M04Rik	ribosomal protein S13	protein-coding	0.851161162833247	0.911678162624962	1.61789402047105	2.26943100403656	1.60260092540821	1.69626130408096	0.896773981742186	1.57570846015626	-0.283827086127823	0.833030601927934	0.998431161219273
Merged-chr5-98055017-3	chr5	98054909	98055109	+	848.305542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24047.0	NM_133738	71914.0	Mm.24842	NM_133738	ENSMUSG00000029338	Antxr2	2310046B19Rik|AW561899|CMG-2|CMG2|cI-35	anthrax toxin receptor 2	protein-coding	4.8814854491106	4.47783787483844	4.06634936589371	4.59925390785757	2.61515895238057	3.88076189727757	2.5339179918669	2.91816190716627	-2.04444075347777	9.04339839918819e-05	0.00288060249540159
Merged-chr12-26449656-4	chr12	26449564	26449764	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021384, intron 3 of 5)	intron (NM_021384, intron 3 of 5)	6788.0	NM_021384	58185.0	Mm.24045	NM_021384	ENSMUSG00000020641	Rsad2	2510004L01Rik|Vig1|cig5	radical S-adenosyl methionine domain containing 2	protein-coding	1.3084112803307	2.39514955522576	2.31143683795503	1.69714143145291	1.75326439060755	1.96645203763649	1.40141833104862	1.70556819820204	-0.812456701380477	0.430067494912148	0.904095509792853
Merged-chr10-22301768-4	chr10	22301662	22301862	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009018, intron 6 of 6)	ORR1C1|LTR|ERVL-MaLR	-4958.0	NR_015465	606736.0	Mm.387042	NR_015465	ENSMUSG00000097352	C920009B18Rik	-	RIKEN cDNA C920009B18 gene	ncRNA	3.40064649326068	3.37194156170018	2.2807783594024	2.52688251501533	3.24367469888792	2.99207204934077	1.56963906688607	4.03114756237345	0.396575521268552	0.611950799375876	0.976008377912766
Merged-chr3-65863502-4	chr3	65863423	65863623	+	943.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	94726.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	1.68744554199663	1.74641797824838	1.54149560849956	2.15903716158602	1.70047617848692	1.75857846369547	1.37363952564862	1.89378728405597	-0.354382589271307	0.730746435408834	0.998431161219273
Merged-chr7-46830920-4	chr7	46830827	46831027	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14877.0	NM_010699	16828.0	Mm.29324	NM_010699	ENSMUSG00000063229	Ldha	Ldh1|Ldhm|l7R2	lactate dehydrogenase A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-113643677-4	chr5	113643566	113643766	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359060)	promoter-TSS (NM_001359060)	-63.0	NM_001359060	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-10664648-1	chr17	10664548	10664748	+	579.0	f0_balb.idr	intron (NM_027032, intron 2 of 4)	intron (NM_027032, intron 2 of 4)	175543.0	NM_027032	69310.0	Mm.18889	NM_027032	ENSMUSG00000037196	Pacrg	1700008H23Rik	PARK2 co-regulated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-58342217-2	chr1	58342117	58342317	+	622.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001008419, intron 26 of 35)	intron (NM_001008419, intron 26 of 35)	-50919.0	NM_025824	66882.0	Mm.21848	NM_025824	ENSMUSG00000051223	Bzw1	1200015E15Rik|mKIAA0005	basic leucine zipper and W2 domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-61999787-4	chr15	61999681	61999881	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14440.0	NM_001177352	17869.0	Mm.2444	NM_010849	ENSMUSG00000022346	Myc	AU016757|Myc2|Niard|Nird|bHLHe39	myelocytomatosis oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-106351707-1	chr1	106351607	106351807	+	577.0	f0_c57.idr	intron (NM_133821, intron 10 of 16)	intron (NM_133821, intron 10 of 16)	179838.0	NM_133821	98432.0	Mm.24115	NM_133821	ENSMUSG00000044340	Phlpp1	AI836256|Phlpp|Plekhe1|SCOP|mKIAA0606	PH domain and leucine rich repeat protein phosphatase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-60416039-2	chr11	60415939	60416139	+	567.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145427, intron 1 of 7)	intron (NM_145427, intron 1 of 7)	1060.0	NM_145427	246782.0	Mm.41651	NM_145427	ENSMUSG00000042709	Atpaf2	ATP12|ATP12p	ATP synthase mitochondrial F1 complex assembly factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98963402-2	chr11	98963302	98963502	+	751.799988	f1_balb.idr|f1_c57bl6.idr	intron (NM_001176528, intron 1 of 7)	intron (NM_001176528, intron 1 of 7)	-1470.0	NM_001361954	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-65728581-2	chr5	65728481	65728681	+	690.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-30725.0	NM_001081321	71521.0	Mm.278974	NM_027818	ENSMUSG00000029202	Pds5a	9030416H16Rik|E230024D05Rik|mKIAA0648	PDS5 cohesin associated factor A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133129564-2	chr4	133129471	133129671	+	619.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-1062.0	NM_153423	242687.0	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	0.483775875525505	0.198975616746406	0.190380381993412	1.23980208579696	1.00105518932164	0.200898690785319	0.192285272897991	0.184850995292483	-0.795588693414526	0.694980154125015	1
Merged-chr19-15201277-5	chr19	15201134	15201334	+	833.700012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	C-rich|Low_complexity|Low_complexity	-603051.0	NM_001302947	21888.0	Mm.103638	NM_011600	ENSMUSG00000024642	Tle4	5730411M05Rik|AA792082|Bce-1|Bce1|ESTM13|ESTM14|Grg4|X83332|X83333|grg-4	transducin-like enhancer of split 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-52060535-4	chr16	52060420	52060620	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033238, intron 3 of 17)	intron (NM_001033238, intron 3 of 17)	28971.0	NM_001033238	208650.0	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-122147593-4	chr2	122147501	122147701	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009735)	promoter-TSS (NM_009735)	-86.0	NM_009735	12010.0	Mm.163	NM_009735	ENSMUSG00000060802	B2m	Ly-m11|beta2-m|beta2m	beta-2 microglobulin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-54100964-4	chr11	54100876	54101076	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011031)	promoter-TSS (NM_011031)	52.0	NM_011031	18452.0	Mm.3705	NM_011031	ENSMUSG00000018906	P4ha2	AA407196|C76437|P4hl	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-104629598-2	chr8	104629498	104629698	+	574.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_019662, exon 4 of 5)	exon (NM_019662, exon 4 of 5)	1723.0	NM_019662	56437.0	Mm.29467	NM_019662	ENSMUSG00000031880	Rrad	REM3|Rad	Ras-related associated with diabetes	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-34225705-2	chr1	34225605	34225805	+	557.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_133833, exon 51 of 93)	exon (NM_133833, exon 51 of 93)	65375.0	NM_010081	13518.0	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-11624447-2	chr11	11624347	11624547	+	711.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001305143, intron 2 of 3)	intron (NM_001305143, intron 2 of 3)	3391.0	NM_001305143	102631730.0	Mm.159430	NM_001305143	ENSMUSG00000062511	4930512M02Rik	-	RIKEN cDNA 4930512M02 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-103142565-3	chr11	103142451	103142651	+	757.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9192.0	NM_027658	71059.0	Mm.273871	NM_027658	ENSMUSG00000043372	Hexim2	4933402L21Rik	hexamethylene bis-acetamide inducible 2	protein-coding	-0.202972091814234	0.413047787469587	-0.193699676885659	0.100474253201963	0.26931302941144	-0.188147171589527	-0.192701207613283	-0.196580041908181	-0.961832990200981	0.688804904577298	1
Merged-chr1-178336603-4	chr1	178336480	178336680	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149827, intron 1 of 16)	CpG	1235.0	NM_016805	51810.0	Mm.86589	NM_016805	ENSMUSG00000039630	Hnrnpu	AA408410|AI256620|AL024194|AL024437|AW557595|C86794|Hnrpu|SAFA|Sp120|hnRNP U	heterogeneous nuclear ribonucleoprotein U	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-105460087-4	chr11	105459990	105460190	+	992.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3355.0	NM_001039242	632687.0	Mm.121570	NM_172568	ENSMUSG00000078627	March10	4933417C16Rik|AV039223|Rnf190	membrane-associated ring finger (C3HC4) 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46075366-2	chr19	46075266	46075466	+	769.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053086)	promoter-TSS (NM_053086)	-481.0	NM_001039352	70769.0	Mm.402190	NM_053086	ENSMUSG00000015176	Nolc1	NOPP130|NOPP140|P130	nucleolar and coiled-body phosphoprotein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-43399556-2	chr11	43399456	43399656	+	827.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25095.0	NR_029558	387164.0		NR_029558	ENSMUSG00000065601	Mir146	Mirn146|miR-146a|mmu-mir-146	microRNA 146	ncRNA	0.3029280766489	-0.109921481150065	0.0448437720635964	0.0299980727905735	0.312231544823711	-0.109025363894077	-0.113008818495781	0.0325936485345259	-0.270770369315906	0.897504655788527	1
Merged-chr8-4166320-4	chr8	4166172	4166372	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039578)	promoter-TSS (NM_001039578)	-295.0	NM_001039578	213027.0	Mm.437106	NM_153536	ENSMUSG00000011832	Evi5l	1700084G18Rik|2310039H16Rik|3110007G05Rik|B130050I23Rik	ecotropic viral integration site 5 like	protein-coding	4.30485593457115	5.24664628148444	6.37855523784544	4.3770657469367	4.18457413170201	5.24352686593576	6.38715980302368	4.15636947725122	-0.0396917222907011	0.960673570381276	0.998431161219273
Merged-chr1-36272314-3	chr1	36272231	36272431	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153408, intron 1 of 3)	intron (NM_153408, intron 1 of 3)	1094.0	NM_153408	214854.0	Mm.389110	NM_153408	ENSMUSG00000047180	Neurl3	2010300P06Rik|Lincr	neuralized E3 ubiquitin protein ligase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-149947833-4	chr1	149947739	149947939	+	994.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008869, intron 1 of 17)	intron (NM_008869, intron 1 of 17)	13451.0	NM_008869	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-41743714-4	chr3	41743608	41743808	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291048, intron 1 of 4)	intron (NM_001291048, intron 1 of 4)	1090.0	NM_027271	73852.0	Mm.29006	NM_027271	ENSMUSG00000025766	D3Ertd751e	2810009O15Rik|4930415G15Rik	DNA segment, Chr 3, ERATO Doi 751, expressed	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-51360356-3	chr3	51360241	51360441	+	882.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	T-rich|Low_complexity|Low_complexity	-19697.0	NM_023502	69257.0	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-16060303-1	chr1	16060203	16060403	+	861.0	f1_c57bl6.idr	Intergenic	MER5B|DNA|hAT-Charlie	33022.0	NM_001243238	75799.0	Mm.78557	NM_001243238	ENSMUSG00000067795	4930444P10Rik	-	RIKEN cDNA 4930444P10 gene	protein-coding	3.12931018741231	3.88009961324864	3.05892654921292	3.49177420345627	2.6425961606668	1.93749726289584	2.47093447180502	2.5357397744137	-1.79316707037857	0.00801037201317558	0.093128336641551
Merged-chr9-90253732-4	chr9	90253633	90253833	+	959.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 1 of 12)	intron (NM_194334, intron 1 of 12)	17036.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-37441151-4	chr6	37441046	37441246	+	931.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178661, intron 1 of 11)	intron (NM_178661, intron 1 of 11)	1002.0	NM_178661	208647.0	Mm.169929	NM_178661	ENSMUSG00000038648	Creb3l2	BBF2H7|C530025K05Rik|SCIRR69	cAMP responsive element binding protein 3-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-47744944-2	chr9	47744844	47745044	+	607.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	73264.0	NR_046048	100038460.0	Mm.447649	NR_046048		Gm10677	-	predicted gene 10677	ncRNA	-1.58994551673671	-1.55912852307891	-1.56844783632235	-1.57610299769523	-1.18549093183599	-1.55710898902261	-1.56633814807757	-1.57473272746952	1.78703309985663	0.610309988231842	1
Merged-chr9-7878437-4	chr9	7878341	7878541	+	838.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5271.0	NM_007464	11796.0	Mm.2026	NM_007464	ENSMUSG00000032000	Birc3	AW107670|Api1|Api2|Birc2|C-IAP2|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF49|cIAP-1|cIAP-2|cIAP1|cIAP2	baculoviral IAP repeat-containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-17479119-3	chr14	17479022	17479222	+	994.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-181838.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-55429467-3	chr9	55429377	55429577	+	857.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172923, intron 8 of 10)	intron (NM_172923, intron 8 of 10)	82766.0	NM_145615	110842.0	Mm.290853	NM_145615	ENSMUSG00000032314	Etfa	2010200I21Rik|D9Ertd394e	electron transferring flavoprotein, alpha polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34965766-2	chr17	34965666	34965866	+	835.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6390.0	NM_010479	193740.0	Mm.6388	NM_010479	ENSMUSG00000091971	Hspa1a	Hsp70-3|Hsp70.3|Hsp72|hsp68|hsp70A1	heat shock protein 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-96478678-4	chr9	96478572	96478772	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011279)	promoter-TSS (NM_011279)	3.0	NM_011279	19823.0	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132424895-2	chr4	132424795	132424995	+	844.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-2449.0	NM_175306	100169.0	Mm.158361	NM_175306	ENSMUSG00000066043	Phactr4	3110001B12Rik|AI527228|AW495572|C330013F19Rik|N28169|mKIAA4120	phosphatase and actin regulator 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-35662238-4	chr18	35662124	35662324	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027733)	promoter-TSS (NM_027733)	-38.0	NM_029485	71242.0	Mm.151498	NM_027733	ENSMUSG00000024352	Spata24	2700012K08Rik|4930583E11Rik|5133400G04Rik|AU016220|TIPT|TIPT2	spermatogenesis associated 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-60892466-4	chr13	60892381	60892581	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	4966.0	NM_007797	13025.0	Mm.30144	NM_007797	ENSMUSG00000074874	Ctla2b	AW545568|Ctla-2b	cytotoxic T lymphocyte-associated protein 2 beta	protein-coding	1.21422449791896	1.15937500420393	0.819355957979069	2.8383191110858	1.22730072944546	1.16979000035926	0.826360413178019	2.85455121193064	0.0300864177342446	0.981214872262503	0.998431161219273
Merged-chr2-90518186-2	chr2	90518075	90518275	+	873.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	-39001.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.265106953949871	0.647089518448801	0.279343470354624	0.914688165733165	0.266431461192532	0.654912765245678	0.280869564933523	0.922618466133073	0.032089074667459	0.986704921885025	1
Merged-chr10-81650205-2	chr10	81650105	81650305	+	814.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001142963, intron 1 of 3)	B2_Mm2|SINE|B2	1136.0	NM_001142963	100233208.0	Mm.327168	NM_001142963	ENSMUSG00000096856	Gm10778	-	predicted gene 10778	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120916669-4	chr11	120916557	120916757	+	971.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027745, intron 3 of 18)	intron (NM_027745, intron 3 of 18)	16215.0	NM_027745	71276.0	Mm.275751	NM_027745	ENSMUSG00000048445	Ccdc57	4933434G05Rik	coiled-coil domain containing 57	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-8466118-4	chr10	8466030	8466230	+	932.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177387, intron 1 of 7)	intron (NM_177387, intron 1 of 7)	52695.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-60290588-3	chr10	60290498	60290698	+	961.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146124, intron 1 of 13)	intron (NM_001146124, intron 1 of 13)	6137.0	NM_001146124	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-25787099-2	chr14	25786999	25787199	+	556.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18243.0	NM_001101433	71918.0	Mm.41904	NM_001101433	ENSMUSG00000055538	Zcchc24	2310047A01Rik	zinc finger, CCHC domain containing 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-119931958-1	chr3	119931858	119932058	+	583.0	f1_balb.idr	Intergenic	L1_Mus3|LINE|L1	-148570.0	NM_019550	56195.0	Mm.29966	NM_019550	ENSMUSG00000028134	Ptbp2	Ptb2|brPTB|nPTB	polypyrimidine tract binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135986221-2	chr4	135986121	135986321	+	683.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025411, intron 2 of 5)	(CA)n|Simple_repeat|Simple_repeat	1023.0	NM_025411	66193.0	Mm.29131	NM_025411	ENSMUSG00000028669	Pithd1	1110049F12Rik|AA408179|Trp26	PITH (C-terminal proteasome-interacting domain of thioredoxin-like) domain containing 1	protein-coding	-2.05752322593321	-2.15521190974092	-2.16307242109104	-2.16952927915413	-2.17938029103484	-2.15350850414045	-2.16129297361887	-2.16837350464794	-0.683654500252594	0.846597994014493	1
Merged-chr3-87528226-2	chr3	87528154	87528354	+	685.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359750, intron 3 of 4)	intron (NM_001359750, intron 3 of 4)	2676.0	NM_001359750	27049.0	Mm.219460	NM_012051	ENSMUSG00000003382	Etv3	AI414410|METS|Pe1	ets variant 3	protein-coding	1.27924789996021	1.32600841625143	0.788209020590827	1.45740099146083	1.38625741441918	1.0134667847118	0.790730335890276	1.36235945369939	-0.302689742846263	0.82708227306689	0.998431161219273
Merged-chr10-12968382-3	chr10	12968241	12968441	+	836.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14|LTR|ERV1	-4082.0	NM_001163591	74732.0	Mm.248648	NM_029075	ENSMUSG00000039232	Stx11	5830405C08Rik	syntaxin 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-11439489-4	chr2	11439380	11439580	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-40980.0	NR_040615	77543.0	Mm.490670	NR_040615	ENSMUSG00000102674	8030442B05Rik	-	RIKEN cDNA 8030442B05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-71155509-4	chr9	71155328	71155528	+	710.825012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_073483, intron 1 of 6)	B1F1|SINE|Alu	7205.0	NM_001271843	64008.0	Mm.449427	NM_022026	ENSMUSG00000032204	Aqp9	1700020I22Rik|AI266899|AQP-9	aquaporin 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-51262475-1	chr11	51262375	51262575	+	767.5	f0_balb.idr	promoter-TSS (NM_007714)	promoter-TSS (NM_007714)	582.0	NM_001358282	193286.0	Mm.80975	NM_177567	ENSMUSG00000045942	BC049762	4930503F14	cDNA sequence BC049762	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-31122354-2	chr6	31122254	31122454	+	686.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_110471, intron 3 of 3)	intron (NR_110471, intron 3 of 3)	-59261.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-79760319-2	chr9	79760219	79760419	+	754.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009945)	promoter-TSS (NM_009945)	-466.0	NM_009945	12866.0	Mm.152627	NM_009945	ENSMUSG00000032330	Cox7a2	COX7AL|Cox7a3|CoxVIIa-L	cytochrome c oxidase subunit VIIa 2	protein-coding	-0.42052124221756	-0.407908729424293	-0.412042998995101	-0.249527189425312	-0.419734532861983	-0.043546984535115	0.273621804697801	-0.414674353175882	2.70701480680285	0.281958984461308	1
Merged-chr2-84429926-3	chr2	84429828	84430028	+	859.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4662.0	NM_018782	54598.0	Mm.75467	NM_018782	ENSMUSG00000059588	Calcrl	AV071593|CRLR	calcitonin receptor-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28809140-4	chr7	28809062	28809262	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1728.0	NM_177301	15388.0	Mm.9043	NM_177301	ENSMUSG00000015165	Hnrnpl	C79783|D830027H13Rik|Hnrpl	heterogeneous nuclear ribonucleoprotein L	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-102672137-3	chr2	102672030	102672230	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077514, intron 1 of 10)	MTC|LTR|ERVL-MaLR	13441.0	NM_001361018	20511.0	Mm.267547	NM_011393	ENSMUSG00000005089	Slc1a2	1700091C19Rik|2900019G14Rik|AI159670|Eaat2|GLT-1|GLT1|MGLT1	solute carrier family 1 (glial high affinity glutamate transporter), member 2	protein-coding	1.48525667235784	2.27581208221932	1.35672076026459	1.29672271994713	4.47845845555687	3.82931653915438	3.47513249518265	4.70558081300503	4.79070341940688	5.20772006212456e-08	5.12149387748938e-06
Merged-chr16-24935487-3	chr16	24935375	24935575	+	886.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 10 of 12)	B3A|SINE|B2	-124164.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-105001114-1	chr12	105001014	105001214	+	636.666687	f0_balb.idr	intron (NM_172500, intron 1 of 16)	intron (NM_172500, intron 1 of 16)	-2437.0	NM_001042699	212073.0	Mm.212688	NM_172500	ENSMUSG00000054150	Syne3	KASH3|nesprin-3	spectrin repeat containing, nuclear envelope family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-106212117-4	chr9	106212013	106212213	+	995.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011876, intron 3 of 8)	intron (NM_011876, intron 3 of 8)	9005.0	NM_011876	23999.0	Mm.274346	NM_011876	ENSMUSG00000023277	Twf2	A6-related|AU014993|Ptk9l|Ptk9r	twinfilin actin binding protein 2	protein-coding	0.916415419119626	0.86529613951041	0.65290207240201	1.09405960488486	1.40025029576459	1.04205563598125	0.655045983038491	1.31521675170472	1.20638689020228	0.413865293078121	0.89604345301985
Merged-chr7-51861797-4	chr7	51861701	51861901	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001330608)	promoter-TSS (NM_001330608)	-214.0	NM_001330608	14453.0	Mm.207360	NM_008087	ENSMUSG00000030498	Gas2	Gas-2	growth arrest specific 2	protein-coding	3.94509122003221	4.68423836104071	3.74930810356493	4.24845287432176	4.51263819965322	4.0600466818171	1.84456026917825	3.7366825629238	-0.482823695826482	0.415783994976271	0.896676881011847
Merged-chr1-86386634-2	chr1	86386534	86386734	+	654.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001319227, exon 3 of 3)	exon (NM_001319227, exon 3 of 3)	1507.0	NM_010341	14767.0	Mm.389159	NM_010341	ENSMUSG00000026237	Nmur1	FM-3|Gpr66|NMU-R1|NMU1R|NmU-R	neuromedin U receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133929462-2	chr4	133929358	133929558	+	819.5	f0_c57.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	38533.0	NM_016957	15331.0	Mm.319660	NM_016957	ENSMUSG00000003038	Hmgn2	HMG-17|Hmg17	high mobility group nucleosomal binding domain 2	protein-coding	4.25949460351516	4.36719851914544	3.82698515969344	2.75204947898712	4.13496309444015	3.83624975527137	2.5306738757835	3.24862837958786	-0.510303906481545	0.391072987482571	0.880464427322676
Merged-chr5-27995362-4	chr5	27995266	27995466	+	688.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-76046.0	NM_153526	231070.0	Mm.30221	NM_153526	ENSMUSG00000045294	Insig1	1810013C12Rik|Insig-1	insulin induced gene 1	protein-coding	2.9958307376205	3.27242076057096	4.2887261399139	2.83040626275271	3.61765520774222	3.1805299937451	4.3614687316051	2.71063496511833	0.195616936101179	0.758362213487768	0.998431161219273
Merged-chr3-87332200-4	chr3	87332062	87332262	+	986.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B2|LTR|ERVK	-25719.0	NM_009690	11801.0	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	5.11183463785644	5.91151371598442	4.93288028413974	5.68523213670472	3.85730287381958	4.53575907571837	3.79428126872841	4.36904471373333	-1.56544669875872	2.74657612260359e-05	0.00105846103808344
Merged-chr3-15426401-3	chr3	15426241	15426441	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001002898)	promoter-TSS (NM_001002898)	86.0	NM_001002898	320832.0	Mm.330924	NM_178792	ENSMUSG00000095788	Sirpb1a	9930027N05Rik|SIRP-beta|Sirpb|Sirpb1	signal-regulatory protein beta 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140828785-3	chr5	140828674	140828874	+	886.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010302, intron 1 of 3)	intron (NM_010302, intron 1 of 3)	1657.0	NM_010302	14673.0	Mm.370185	NM_010302	ENSMUSG00000000149	Gna12	AI414047|AI504261|Galpha12	guanine nucleotide binding protein, alpha 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-157925179-4	chr3	157925090	157925290	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145953)	promoter-TSS (NM_145953)	-127.0	NM_145953	107869.0	Mm.28301	NM_145953	ENSMUSG00000028179	Cth	0610010I13Rik|AI314617|BC019483|CSE|Cys3	cystathionase (cystathionine gamma-lyase)	protein-coding	3.18307889712512	4.75442197235991	4.57242192949203	2.62367520378329	4.15473741963844	2.66356412174579	4.33124662564627	4.10199624215692	-0.146255290766678	0.811415856122381	0.998431161219273
Merged-chr11-116865661-3	chr11	116865419	116865619	+	589.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_178620, intron 8 of 12)	intron (NM_178620, intron 8 of 12)	11519.0	NM_001361586	69900.0	Mm.348004	NM_178620	ENSMUSG00000020818	Mfsd11	2600014M03Rik	major facilitator superfamily domain containing 11	protein-coding	-0.0281535080871993	-0.386145140188069	-0.390177554308488	-0.230736377916763	-0.397666886655648	-0.385235231345964	0.284892441988794	-0.392741604328067	0.658210118416127	0.794445763499522	1
Merged-chr10-79962646-2	chr10	79962546	79962746	+	599.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_175450, intron 2 of 9)	intron (NM_175450, intron 2 of 9)	2494.0	NM_175450	216156.0	Mm.35828	NM_175450	ENSMUSG00000035754	Wdr18	2310012I10Rik|AU044733|AW122032	WD repeat domain 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-56746593-2	chr19	56746493	56746693	+	678.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24221.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97423978-2	chr6	97423878	97424078	+	723.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	35308.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-120825277-4	chr4	120825182	120825382	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357194)	promoter-TSS (NM_001357194)	-73.0	NM_001357194	18046.0	Mm.318389	NM_008692	ENSMUSG00000032897	Nfyc	-	nuclear transcription factor-Y gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-65319477-1	chr3	65319377	65319577	+	910.0	f0_c57.idr	exon (NM_001289450, exon 9 of 15)	exon (NM_001289450, exon 9 of 15)	-16792.0	NR_126080	102637797.0	Mm.446731	NR_126080	ENSMUSG00000104093	A330015K06Rik	-	RIKEN cDNA A330015K06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-125403262-1	chr5	125403162	125403362	+	540.0	f1_balb.idr	Intergenic	B3|SINE|B2	-13245.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4409276-4	chr19	4409186	4409386	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur2|SINE|Alu	-12209.0	NM_001001984	225876.0	Mm.31941	NM_001001984	ENSMUSG00000054611	Kdm2a	100043628|5530401A10Rik|AA589516|AW536790|Cxxc8|Fbl11|Fbl7|Fbxl11|Gm4560|Jhdm1|Jhdm1a|lalina	lysine (K)-specific demethylase 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118240645-2	chr11	118240545	118240745	+	939.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	7947.0	NM_001112699	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-95612197-4	chr16	95612088	95612288	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25595.0	NM_001302152	13876.0	Mm.164531	NM_133659	ENSMUSG00000040732	Erg	D030036I24Rik	ETS transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-60701970-2	chr11	60701824	60702024	+	651.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_008502, intron 1 of 20)	intron (NM_008502, intron 1 of 20)	2234.0	NM_008502	16897.0	Mm.285453	NM_008502	ENSMUSG00000020536	Llgl1	AI325176|Lgl1|Llglh|Mgl1	LLGL1 scribble cell polarity complex component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-87485201-2	chr6	87485104	87485304	+	747.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037727, intron 4 of 10)	intron (NM_001037727, intron 4 of 10)	11123.0	NR_104483	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-122562171-4	chr10	122562089	122562289	+	775.983337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7702.0	NR_040616	319272.0	Mm.411763	NR_040616	ENSMUSG00000112095	A130077B15Rik	-	RIKEN cDNA A130077B15 gene	ncRNA	0.969387712859744	1.71316324366134	0.815104572184438	1.87589479709694	1.69765913703971	1.72824272221383	0.818896910550537	0.804029392897489	-0.271992890981302	0.84809171064105	0.998431161219273
Merged-chr11-79291386-4	chr11	79291299	79291499	+	906.2777710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10B|LTR|ERVL	-36704.0	NM_019653	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-91411858-3	chr8	91411756	91411956	+	994.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011936, intron 3 of 8)	intron (NM_011936, intron 3 of 8)	98331.0	NM_011936	26383.0	Mm.4375	NM_011936	ENSMUSG00000055932	Fto	AW743446|mKIAA1752	fat mass and obesity associated	protein-coding	1.8352087827751	1.89367187487505	1.25641529814613	1.21263432011178	3.16265666624388	2.63266496139939	4.09772635485059	3.19653990925152	3.78769202234253	4.21589496832607e-05	0.00152051025541011
Merged-chr1-64127016-4	chr1	64126927	64127127	+	896.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5638.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-5059657-4	chr7	5059540	5059740	+	883.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001290432, exon 5 of 6)	exon (NM_001290432, exon 5 of 6)	-2503.0	NM_133671	22185.0	Mm.360389	NM_133671	ENSMUSG00000030435	U2af2	65kDa	U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2	protein-coding	1.43054484528552	2.07711436993206	0.843905689076261	1.74440843929363	0.807874714656842	1.89525076633083	0.84803848784354	1.23738224169607	-1.02430862215146	0.454373477502215	0.919120493489568
Merged-chr19-3855165-2	chr19	3855065	3855265	+	745.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271496, intron 1 of 11)	intron (NM_001271496, intron 1 of 11)	3392.0	NR_073190	12660.0	Mm.225505	NM_013490	ENSMUSG00000024843	Chka	CK|CK/EK-alpha|Chetk-alpha|Chk|ChoK|EK|EtnK-alpha	choline kinase alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-52591752-2	chr8	52591652	52591852	+	711.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	235141.0	NR_151738	330767.0	Mm.246790	NR_151738	ENSMUSG00000110013	1190028D05Rik	-	RIKEN cDNA 1190028D05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43033022-2	chr4	43032922	43033122	+	810.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045567, exon 8 of 8)	non-coding (NR_045567, exon 8 of 8)	-1638.0	NM_023231	66592.0	Mm.331565	NM_023231	ENSMUSG00000028455	Stoml2	0610038F01Rik|MSLP2|SLP-2	stomatin (Epb7.2)-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-41307465-2	chr10	41307365	41307565	+	967.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4224.0	NM_133999	103199.0	Mm.277242	NM_133999	ENSMUSG00000038417	Fig4	A530089I17Rik|AI326867|Sac3	FIG4 phosphoinositide 5-phosphatase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3587934-2	chr19	3587834	3588034	+	772.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008513, intron 21 of 22)	intron (NM_008513, intron 21 of 22)	-12185.0	NM_028999	52036.0	Mm.284686	NM_028999	ENSMUSG00000024908	Ppp6r3	4930528G08Rik|9130026N02Rik|D19Bwg1430e|D19Ertd703e|Pp6r3|Ppcs3|Pptcs3|Sapl|Saps3|mKIAA1558	protein phosphatase 6, regulatory subunit 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-35048602-2	chr12	35048502	35048702	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001014973, intron 1 of 25)	intron (NM_001014973, intron 1 of 25)	1413.0	NM_001014973	217463.0	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-23809020-4	chr18	23808900	23809100	+	970.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153058, intron 1 of 6)	intron (NM_153058, intron 1 of 6)	5030.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71669698-4	chr17	71669603	71669803	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3558.0	NM_177087	320159.0	Mm.187372	NM_177087	ENSMUSG00000045761	Togaram2	4632412N22Rik|Fam179a	TOG array regulator of axonemal microtubules 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-50530297-4	chr16	50530204	50530404	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040379, intron 1 of 5)	intron (NR_040379, intron 1 of 5)	1802.0	NR_040379	619312.0	Mm.427671	NR_040379		G730013B05Rik	linc-Cblb|linc1610	RIKEN cDNA G730013B05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-38741368-2	chr16	38741268	38741468	+	787.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285793)	promoter-TSS (NM_001285793)	-891.0	NR_152434	56375.0	Mm.182377	NM_019804	ENSMUSG00000022793	B4galt4	9130402O08Rik|B4galt-IV|b4Gal-T4|beta4Gal-T4|beta4GalT-IV	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75531046-2	chr11	75530946	75531146	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173388)	promoter-TSS (NM_173388)	-648.0	NM_001199284	215113.0	Mm.11186	NM_173388	ENSMUSG00000038178	Slc43a2	7630402D21Rik|BC042513|Lat4	solute carrier family 43, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-91233944-2	chr10	91233844	91234044	+	637.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	-13325.0	NR_151510	102633753.0	Mm.416936	NR_151510		4930534H03Rik	-	RIKEN cDNA 4930534H03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-67307306-4	chr7	67307220	67307420	+	709.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357324, intron 3 of 11)	intron (NM_001357324, intron 3 of 11)	65538.0	NM_001291192	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-148818658-2	chr4	148818558	148818758	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027195, intron 1 of 15)	intron (NM_027195, intron 1 of 15)	14266.0	NM_027195	69743.0	Mm.233879	NM_027195	ENSMUSG00000028977	Casz1	2410019P08Rik|AV096627|BC040081|Cst|D4Ertd432e	castor zinc finger 1	protein-coding	1.62483645470691	0.695804381747277	1.05937525103048	0.673814685350827	0.980124096318725	0.69855916608957	1.56058290837565	1.29409891181854	0.347297080511447	0.818166113147821	0.998431161219273
Merged-chr13-97584355-4	chr13	97584259	97584459	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_046157)	TTS (NR_046157)	24359.0	NR_046157	328314.0	Mm.138047	NR_046157	ENSMUSG00000110235	Gm5086	B230311A21|EG328314	predicted gene 5086	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-100524751-2	chr12	100524651	100524851	+	609.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3929.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46488338-2	chr19	46488238	46488438	+	694.25	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_015752, exon 12 of 12)	3' UTR (NM_015752, exon 12 of 12)	-13310.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-117114111-3	chr2	117114032	117114232	+	728.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6939.0	NM_001277256	114715.0	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-81058710-4	chr3	81058616	81058816	+	973.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019971, intron 1 of 5)	intron (NM_019971, intron 1 of 5)	22300.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	1.24716055114218	1.57565657498936	2.45845823612613	1.83530368459605	1.25745775946732	1.41347549879562	1.16807468142146	0.90947653911543	-2.26755147393723	0.0591985924219071	0.359688409121223
Merged-chr2-155051778-1	chr2	155051678	155051878	+	849.0	f1_c57bl6.idr	TTS (NM_015770)	TTS (NM_015770)	22719.0	NM_016661	269378.0	Mm.330692	NM_016661	ENSMUSG00000027597	Ahcy	AA987153|AL024110|CuBP|SAHH	S-adenosylhomocysteine hydrolase	protein-coding	2.26905522860913	2.04878926199816	2.16466558320996	2.25715783096891	2.91832219151677	2.81067906498005	2.81996906682861	3.31603920149567	1.66407923983718	0.0244492055888016	0.205998292594411
Merged-chr9-114785551-4	chr9	114785460	114785660	+	954.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28B|LTR|ERVL	-3567.0	NM_001252479	102545.0	Mm.35600	NM_133978	ENSMUSG00000032436	Cmtm7	AI481279|Cklfsf7|LNV	CKLF-like MARVEL transmembrane domain containing 7	protein-coding	-1.56355737717652	-1.81244775989375	-1.82128546162293	-1.82854501295842	-1.83962066705452	-1.81053259306168	-1.81928479966835	-1.82724555674025	-1.28500227969968	0.715751224811686	1
Merged-chr2-91085949-2	chr2	91085783	91085983	+	845.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10795.0	NM_011355	20375.0	Mm.1302	NM_011355	ENSMUSG00000002111	Spi1	Dis-1|Dis1|PU.1|Sfpi-1|Sfpi1|Spi-1|Tcfpu1|Tfpu.1	spleen focus forming virus (SFFV) proviral integration oncogene	protein-coding	2.10955745205613	2.11577535638923	2.04488116590567	2.78713783617218	2.22325032133734	2.26704015059296	1.29312226479385	1.69299009813021	-0.922538478286453	0.335376508957488	0.83593283300053
Merged-chr2-159843478-4	chr2	159843367	159843567	+	929.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-103874.0	NR_040498	71081.0	Mm.383491	NR_040498	ENSMUSG00000085198	4933416E03Rik	-	RIKEN cDNA 4933416E03 gene	ncRNA	-0.00361031739726153	0.0110296700529746	0.43764184215348	0.405513677031064	-0.00270155929080548	0.0121177420426452	0.177974196005419	0.514450683423633	-0.269557168794209	0.89963489299503	1
Merged-chr8-46617965-4	chr8	46617863	46618063	+	926.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_151680)	promoter-TSS (NR_151680)	672.0	NM_009810	12367.0	Mm.34405	NM_009810	ENSMUSG00000031628	Casp3	A830040C14Rik|AC-3|CASP-3|CC3|CPP-32|CPP32|Caspase-3|Lice|SCA-1|Yama|mldy	caspase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-40994080-4	chr8	40993927	40994127	+	993.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005863, intron 13 of 13)	B1_Mus1|SINE|Alu	-23441.0	NR_015457	78849.0	Mm.440930	NR_015457	ENSMUSG00000084960	B430010I23Rik	-	RIKEN cDNA B430010I23 gene	ncRNA	4.02514357290201	4.17815241994893	4.17372016097525	4.77322205530105	4.05804757670546	5.34228574903209	4.32824759607629	4.5536700192559	0.421041794130367	0.325684463243509	0.827782420413875
Merged-chr9-21165219-4	chr9	21165123	21165323	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183408)	promoter-TSS (NM_183408)	-491.0	NM_183408	18577.0	Mm.191749	NM_019798	ENSMUSG00000032177	Pde4a	D9Ertd60e|Dpde2	phosphodiesterase 4A, cAMP specific	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-60375868-2	chr18	60375768	60375968	+	952.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146275)	promoter-TSS (NM_001146275)	-161.0	NM_001146275	60440.0	Mm.261140	NM_021792	ENSMUSG00000054072	Iigp1	2900074L10Rik|AI046432|AW111922|Ifgga1|Iigp|Irga6	interferon inducible GTPase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-40587207-4	chr19	40587097	40587297	+	969.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153554, intron 1 of 18)	intron (NM_153554, intron 1 of 18)	1266.0	NM_019698	56454.0	Mm.233117	NM_019698	ENSMUSG00000025007	Aldh18a1	2810433K04Rik|AI429789|Pycs	aldehyde dehydrogenase 18 family, member A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-110568194-2	chr13	110568094	110568294	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	173150.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-78488785-4	chr1	78488694	78488894	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_102757, exon 1 of 17)	non-coding (NR_102757, exon 1 of 17)	103.0	NR_102758	23874.0	Mm.17898	NM_011811	ENSMUSG00000026245	Farsb	C76708|Farsa|Farsl|Farslb|Frsb	phenylalanyl-tRNA synthetase, beta subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-102899452-4	chr13	102899362	102899562	+	979.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175171, intron 4 of 28)	intron (NM_175171, intron 4 of 28)	139207.0	NR_130171	76624.0	Mm.426384	NR_130171	ENSMUSG00000091906	1700099I09Rik	-	RIKEN cDNA 1700099I09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106790548-2	chr11	106790448	106790648	+	915.599976	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166685, intron 1 of 18)	intron (NM_001166685, intron 1 of 18)	1296.0	NM_001166685	320162.0	Mm.30524	NM_177088	ENSMUSG00000018372	Cep95	4732496G21Rik|AI118346|AI448335|Ccdc45|D330027A14Rik|F630025I20Rik	centrosomal protein 95	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-76027339-2	chr11	76027239	76027439	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029658, intron 1 of 2)	CpG	443.0	NM_029658	76566.0	Mm.34131	NM_029658	ENSMUSG00000020846	Rflnb	1500005K14Rik|Fam101b|RefilinB|cfm	refilin B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-108290370-4	chr9	108290261	108290461	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025449)	promoter-TSS (NM_025449)	-96.0	NM_025449	66257.0	Mm.10407	NM_025449	ENSMUSG00000032606	Nicn1	1500032A17Rik	nicolin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-17646446-4	chr16	17646338	17646538	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166164)	promoter-TSS (NM_001166164)	-32.0	NM_001166164	72315.0	Mm.297777	NM_001166164	ENSMUSG00000041617	Ccdc74a	2310015A05Rik	coiled-coil domain containing 74A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-129307176-4	chr7	129307106	129307306	+	770.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080963, intron 1 of 6)	intron (NM_001080963, intron 1 of 6)	50112.0	NM_001080963	381925.0	Mm.39184	NM_001080963	ENSMUSG00000070366	Plpp4	C030048B12Rik|Gm1090|Ppapdc1a	phospholipid phosphatase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-93815652-1	chr16	93815552	93815752	+	828.0	f1_balb.idr	Intergenic	Intergenic	-16469.0	NM_001045529	338467.0	Mm.287329	NM_001045529	ENSMUSG00000039456	Morc3	1110051N18Rik|AI452146|BF318192|D16Jhu32e|NXP2|Zcwcc3	microrchidia 3	protein-coding	2.969705905856	3.67944877315517	2.72372776083252	2.86299571920746	3.20381587867977	2.70705139261094	2.96954146128044	1.825771225359	-0.595880990379061	0.405948084695368	0.89095290927429
Merged-chr14-79546483-1	chr14	79546383	79546583	+	548.0	f1_c57bl6.idr	intron (NM_007920, intron 2 of 8)	Lx5|LINE|L1	30809.0	NM_001286411	13709.0	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-134079190-4	chr1	134079107	134079307	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007570)	promoter-TSS (NM_007570)	-52.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95349708-2	chr3	95349608	95349808	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163641, intron 4 of 21)	B3A|SINE|B2	7494.0	NM_001163641	84505.0	Mm.490259	NM_018877	ENSMUSG00000015697	Setdb1	AU022152|ESET|KMT1E|mKIAA0067	SET domain, bifurcated 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27776095-2	chr2	27775995	27776195	+	717.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	65512.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117843121-2	chr10	117843041	117843241	+	996.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_024457, intron 1 of 7)	B1_Mus1|SINE|Alu	2833.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	1.18229884058984	1.13309621593575	0.603407869212859	1.04942547431555	0.58520039940978	1.27154547098032	0.605545380700605	1.05592038452614	-0.445789022933456	0.778483387105325	0.998431161219273
Merged-chr17-79442790-3	chr17	79442728	79442928	+	904.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35057.0	NR_033463	74622.0	Mm.311921	NR_033463		4930429F11Rik	-	RIKEN cDNA 4930429F11 gene	ncRNA	2.96934995926373	4.26124579395676	3.154796486921	3.80820822991091	2.52016545189958	1.41151921706943	1.35185053060873	1.60011080752368	-3.3566981283749	6.67198244542785e-05	0.00222362348278454
Merged-chr11-68654088-3	chr11	68653999	68654199	+	676.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA7|LINE|L1	-37816.0	NM_175260	77579.0	Mm.218233	NM_175260	ENSMUSG00000020900	Myh10	5730504C04Rik|9330167F11Rik|Fltn|Myhn-2|Myhn2|NMHC II-B|NMHC-B|NMHCII-B|NMMHC II-b|NMMHC-B|NMMHC-IIB|SMemb|mKIAA3005	myosin, heavy polypeptide 10, non-muscle	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-62604429-3	chr17	62604289	62604489	+	806.983337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_207654, exon 5 of 5)	3' UTR (NM_207654, exon 5 of 5)	276928.0	NM_207654	13640.0	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-130636169-2	chr2	130636069	130636269	+	576.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_197945, exon 4 of 5)	exon (NM_197945, exon 4 of 5)	-6131.0	NM_001255994	140629.0	Mm.486003	NM_080562	ENSMUSG00000027300	Ubox5	1500010O06Rik|C330018L13Rik|Rnf37|UIP5|Ubce7ip5|Ube7ip5	U box domain containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-92530127-2	chr2	92530027	92530227	+	754.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-62079.0	NR_106080	102466819.0		NR_106080	ENSMUSG00000099223	Mir7221	Gm27378|mmu-mir-7221	microRNA 7221	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-134676945-2	chr5	134676845	134677045	+	605.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_010717, intron 2 of 15)	intron (NM_010717, intron 2 of 15)	1303.0	NM_001305875	16885.0	Mm.15409	NM_010717	ENSMUSG00000029674	Limk1	KIZ-1|LIMK-1|Limk	LIM-domain containing, protein kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107713613-4	chr9	107713517	107713717	+	999.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3142.0	NM_011349	20350.0	Mm.12903	NM_011349	ENSMUSG00000034684	Sema3f	Sema4|Semak	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133353598-4	chr4	133353483	133353683	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14268.0	NM_199306	230796.0	Mm.226576	NM_199306	ENSMUSG00000037622	Wdtc1	Gm695|adipose|adp	WD and tetratricopeptide repeats 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-11387287-3	chr4	11387147	11387347	+	768.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290383)	promoter-TSS (NM_001290383)	-464.0	NM_194055	207920.0	Mm.387719	NM_194055	ENSMUSG00000040728	Esrp1	2210008M09Rik|A630065D16|BC031468|Rbm35a	epithelial splicing regulatory protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-25437748-2	chr12	25437634	25437834	+	851.5	f0_balb.idr|f1_balb.idr	Intergenic	B4|SINE|B4	308560.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	0.304865485564954	0.330271538108314	0.322020756736265	0.315607978942112	0.82995478478229	1.21738632378621	0.823751080317952	0.651723777875803	4.43765292036057	0.0141300065711487	1
Merged-chr7-126782879-2	chr7	126782784	126782984	+	863.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_011538, exon 3 of 8)	exon (NM_011538, exon 3 of 8)	1401.0	NM_011538	21389.0	Mm.727	NM_011538	ENSMUSG00000030699	Tbx6	rv	T-box 6	protein-coding	0.000324078199647998	-0.251066105564332	-0.255565849413455	0.454501829437087	-0.263933793852437	0.109327545017791	-0.254573722146179	-0.258429098361577	-1.74983750242083	0.47567212794483	1
Merged-chr2-159811855-4	chr2	159811741	159811941	+	886.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-135500.0	NR_040498	71081.0	Mm.383491	NR_040498	ENSMUSG00000085198	4933416E03Rik	-	RIKEN cDNA 4933416E03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-25785416-4	chr17	25785323	25785523	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026897)	promoter-TSS (NM_026897)	-85.0	NM_026897	68977.0	Mm.29230	NM_026897	ENSMUSG00000061046	Haghl	1500017E18Rik|2810014I23Rik|C330022E15Rik	hydroxyacylglutathione hydrolase-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-69257267-1	chr3	69257167	69257367	+	634.0	f0_balb.idr	Intergenic	Intergenic	34848.0	NM_027843	71619.0	Mm.98122	NM_027843	ENSMUSG00000098207	Arl14	9130014L17Rik|Arf7	ADP-ribosylation factor-like 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27405173-7	chr2	27405052	27405252	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009500, intron 1 of 27)	intron (NM_009500, intron 1 of 27)	22456.0	NR_133905	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-127831929-4	chr2	127831834	127832034	+	981.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113179)	promoter-TSS (NM_001113179)	-75.0	NM_009772	12235.0	Mm.2185	NM_009772	ENSMUSG00000027379	Bub1	AL022991|Bub1a|C80208|D2Xrf87	BUB1, mitotic checkpoint serine/threonine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-33329114-2	chr2	33329014	33329214	+	811.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175211, intron 3 of 19)	intron (NM_175211, intron 3 of 19)	42380.0	NM_001290570	241308.0	Mm.274249	NM_175211	ENSMUSG00000038831	Ralgps1	5830418G11Rik|AI853783|AI854138|RALGEF2|RALGPS1A|RalGEF 2|mKIAA0351	Ral GEF with PH domain and SH3 binding motif 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-83147536-2	chr15	83147436	83147636	+	615.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347082, intron 1 of 7)	MLTR12|LTR|ERV1	1842.0	NM_178627	73826.0	Mm.23758	NM_178627	ENSMUSG00000041815	Poldip3	1110008P04Rik|AA408269|AL022852|C77954|PDIP46|SKAR|mKIAA1649	polymerase (DNA-directed), delta interacting protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-52396694-7	chr11	52396660	52396860	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153117, intron 1 of 2)	CpG	332.0	NM_153117	213673.0	Mm.291979	NM_153117	ENSMUSG00000036275	9530068E07Rik	C85061|Kct2	RIKEN cDNA 9530068E07 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134036873-6	chr6	134036740	134036940	+	807.972229	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007961, intron 1 of 7)	intron (NM_007961, intron 1 of 7)	1140.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	0.979064284148777	0.883988199841918	0.530421764930367	1.04728960070367	0.989382351923881	0.539622162210032	0.856998851508979	0.688423246248341	-0.526751735394919	0.736454650819324	1
Merged-chr10-88680355-3	chr10	88680225	88680425	+	848.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011461, intron 2 of 5)	ID_B1|SINE|B4	2698.0	NM_011461	20728.0	Mm.21642	NM_011461	ENSMUSG00000004359	Spic	AU019198|C76795|Prf|Spi-C	Spi-C transcription factor (Spi-1/PU.1 related)	protein-coding	-0.00745047553654536	0.0894456097579857	0.287793558289014	-0.251676111760305	-0.119426931278768	-0.243751492924955	-0.247748403385455	-0.251143567995732	-2.72985321833679	0.233146925050792	1
Merged-chr17-74711017-4	chr17	74710931	74711131	+	939.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6719.0	NM_152817	74196.0	Mm.209503	NM_152817	ENSMUSG00000024078	Ttc27	2610511O17Rik	tetratricopeptide repeat domain 27	protein-coding	3.36527626307215	4.53766442695636	4.02137707469575	4.97720139906934	3.22258899186034	3.42457205615526	3.91904019452888	3.07804439972547	-1.25956551267236	0.0171158060207667	0.15993414379841
Merged-chr1-34716650-4	chr1	34716554	34716754	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-80444.0	NR_033627	241051.0	Mm.282827	NR_033627		AA619741	-	PHD finger protein 19 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-14667395-3	chr3	14667285	14667485	+	650.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Charlie1|DNA|hAT-Charlie	25658.0	NM_024495	71934.0	Mm.158776	NM_024495	ENSMUSG00000027555	Car13	2310075C21Rik|Ca13	carbonic anhydrase 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-163804432-3	chr2	163804331	163804531	+	761.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16403.0	NM_016873	22403.0	Mm.13828	NM_016873	ENSMUSG00000027656	Wisp2	Ccn5|Crgr4|Ctgfl|Rcop1	WNT1 inducible signaling pathway protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-40993555-4	chr19	40993449	40993649	+	870.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008528, intron 1 of 16)	RSINE1|SINE|B4	986.0	NM_008528	17060.0	Mm.9749	NM_008528	ENSMUSG00000061132	Blnk	BASH|Bca|Ly-57|Ly57|Lyw-57|SLP-65	B cell linker	protein-coding	-2.05752322593321	-2.15521190974092	-2.16307242109104	-2.16952927915413	-2.17938029103484	-2.15350850414045	-2.16129297361887	-2.16837350464794	-0.683654500252594	0.846597994014493	1
Merged-chr8-25600481-2	chr8	25600381	25600581	+	776.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1120.0	NM_001308481	234135.0	Mm.217337	NM_001001735	ENSMUSG00000054823	Nsd3	6720429E03|A530023P05|AI528490|WHISTLE|Whsc1l1	nuclear receptor binding SET domain protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-119495123-2	chr13	119495023	119495223	+	610.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177666, intron 2 of 3)	intron (NM_001177666, intron 2 of 3)	6263.0	NM_001177666	633640.0	Mm.46679	NM_001039244	ENSMUSG00000074634	Tmem267	EG633640|Gm7120	transmembrane protein 267	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-143229975-2	chr6	143229875	143230075	+	674.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15913.0	NR_027803	52285.0	Mm.354898	NM_001033129		D6Ertd474e	1700001I24Rik|AU023129	DNA segment, Chr 6, ERATO Doi 474, expressed	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-96185855-4	chr10	96185746	96185946	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40361.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-73905198-3	chr12	73905106	73905306	+	909.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001313920, intron 1 of 14)	intron (NM_001313920, intron 1 of 14)	-2661.0	NM_010431	15251.0	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-122739302-4	chr10	122739208	122739408	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110218, intron 1 of 9)	intron (NM_001110218, intron 1 of 9)	59993.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-190174356-2	chr1	190174256	190174456	+	584.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_151620, intron 1 of 1)	intron (NR_151620, intron 1 of 1)	-3529.0	NM_008937	19130.0	Mm.132579	NM_008937	ENSMUSG00000010175	Prox1	A230003G05Rik|PROX-1	prospero homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-64927233-2	chr1	64927133	64927333	+	723.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039493, intron 2 of 7)	intron (NM_001039493, intron 2 of 7)	29591.0	NM_001039493	241075.0	Mm.239534	NM_175509	ENSMUSG00000051344	Plekhm3	9430067K14Rik|A230102O09Rik|AI449570|DAPR|Plekhm1l	pleckstrin homology domain containing, family M, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46794131-2	chr8	46794031	46794231	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_152560, intron 2 of 7)	intron (NR_152560, intron 2 of 7)	54386.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-99194148-4	chr4	99194020	99194220	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145967)	promoter-TSS (NM_001145967)	-27.0	NM_001145967	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	5.49984404677034	4.9909789633448	5.0030621871951	5.24768499441422	5.13546338631966	5.50853954869541	4.77953562625388	5.631845367664	0.107880049430387	0.730434537739263	0.998431161219273
Merged-chr9-88959152-3	chr9	88959046	88959246	+	605.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009742, intron 1 of 1)	intron (NM_009742, intron 1 of 1)	2226.0	NM_009742	12044.0	Mm.425593	NM_009742	ENSMUSG00000102037	Bcl2a1a	A1|BB218357|Bcl2a1|Bfl-1|Hbpa1	B cell leukemia/lymphoma 2 related protein A1a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56479550-4	chr17	56479438	56479638	+	774.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3058.0	NM_011218	19280.0	Mm.258771	NM_011218	ENSMUSG00000013236	Ptprs	AL022616|PTP|PTP-NU3|PTPNU-3|PTPsigma|Ptpt9|R-PTP-S|RPTPsigma	protein tyrosine phosphatase, receptor type, S	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-137664842-2	chr4	137664742	137664942	+	611.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_138591, exon 1 of 24)	non-coding (NR_138591, exon 1 of 24)	116.0	NR_138591	110351.0	Mm.180763	NM_029563	ENSMUSG00000041351	Rap1gap	1300019I11Rik|2310004O14Rik|AI427470|ARPP-90|Gap|Rap1GAP1|Rap1ga1	Rap1 GTPase-activating protein	protein-coding	-1.84371485578039	-1.81332821174849	-1.82251738371298	-1.83006564316449	-1.84158176955426	-1.81133687985023	-1.5312619047181	-1.82871450833159	1.60090129203521	0.64914985597185	1
Merged-chr18-67449327-4	chr18	67449225	67449425	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027130)	promoter-TSS (NM_027130)	-189.0	NM_027130	69597.0	Mm.426052	NM_027130	ENSMUSG00000024527	Afg3l2	2310036I02Rik|AW260507|Emv66|par	AFG3-like AAA ATPase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-77013372-4	chr5	77013278	77013478	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_077218, intron 2 of 3)	intron (NR_077218, intron 2 of 3)	-2645.0	NM_027970	71868.0	Mm.151092	NM_027970	ENSMUSG00000029248	Thegl	1700023E05Rik	theg spermatid protein like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139465104-4	chr5	139464998	139465198	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4564.0	NM_028469	73212.0	Mm.84294	NM_028469	ENSMUSG00000053553	3110082I17Rik	AW411904	RIKEN cDNA 3110082I17 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122576067-2	chr8	122575967	122576167	+	796.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_009698, intron 2 of 4)	intron (NM_009698, intron 2 of 4)	840.0	NM_009698	11821.0	Mm.1786	NM_009698	ENSMUSG00000006589	Aprt	C85684	adenine phosphoribosyl transferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-70542744-4	chr9	70542627	70542827	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025690)	promoter-TSS (NM_025690)	12.0	NM_025690	66660.0	Mm.22379	NM_025690	ENSMUSG00000032212	Sltm	5730455C01Rik|5730555F13Rik|9130215G10Rik|Met	SAFB-like, transcription modulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69689228-4	chr11	69689123	69689323	+	794.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011614, intron 5 of 6)	intron (NM_011614, intron 5 of 6)	-3669.0	NM_023517	69583.0	Mm.8983	NM_023517	ENSMUSG00000089669	Tnfsf13	2310026N09Rik|April|Tall2|Tnlg7b|Trdl1	tumor necrosis factor (ligand) superfamily, member 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-173770852-2	chr2	173770767	173770967	+	808.875	f0_balb.idr|f0_c57.idr	intron (NM_019806, intron 2 of 5)	intron (NM_019806, intron 2 of 5)	33296.0	NM_019806	56491.0	Mm.260456	NM_019806	ENSMUSG00000054455	Vapb	AI225786|AI840687|AI848259|D2Abb2e|R75548|VAP33b|Vamp33b	vesicle-associated membrane protein, associated protein B and C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-28958659-6	chr13	28958548	28958748	+	877.611084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4949.0	NM_009238	20677.0	Mm.240627	NM_009238	ENSMUSG00000076431	Sox4	AA682046|Sox-4	SRY (sex determining region Y)-box 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-92650243-2	chr1	92650143	92650343	+	643.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1402.0	NM_153114	260301.0	Mm.219545	NM_153114	ENSMUSG00000044055	Otos	OTOSP	otospiralin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-38679587-5	chr16	38679561	38679761	+	955.080017	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020260, intron 1 of 11)	intron (NM_020260, intron 1 of 11)	33374.0	NM_020260	12549.0	Mm.370848	NM_020260	ENSMUSG00000022799	Arhgap31	5830477L08Rik|AU041750|Cdgap|D330026I07Rik	Rho GTPase activating protein 31	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122268198-4	chr5	122268085	122268285	+	960.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3725.0	NM_001039153	654470.0	Mm.28804	NM_001039153	ENSMUSG00000038593	Tctn1	G730031O11Rik|Tect1	tectonic family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-43936132-3	chr1	43936040	43936240	+	617.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009418, intron 1 of 29)	intron (NM_009418, intron 1 of 29)	2146.0	NM_009418	22019.0	Mm.401675	NM_009418	ENSMUSG00000041763	Tpp2	TPP-2|TppII	tripeptidyl peptidase II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-34692544-1	chr12	34692444	34692644	+	781.0	f0_balb.idr	intron (NM_001271386, intron 3 of 27)	intron (NM_001271386, intron 3 of 27)	-163655.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	1.11028068634023	1.43243554932005	0.78431896644634	0.769918300531414	1.26449076264473	2.29046902399886	1.02799375887026	1.59512415419975	2.10505211417054	0.111734836893577	0.52339715241377
Merged-chr1-136065293-2	chr1	136065193	136065393	+	735.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081023, intron 2 of 43)	intron (NM_001081023, intron 2 of 43)	12392.0	NM_014193	12292.0	Mm.4418	NM_014193	ENSMUSG00000026407	Cacna1s	AW493108|Cav1.1|Cchl1a3|DHPR|fmd|mdg|sj	calcium channel, voltage-dependent, L type, alpha 1S subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-127135501-3	chr1	127135423	127135623	+	937.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69463.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	0.629913373334856	0.287360911387089	0.828768480560013	0.276651069891766	0.531542585925394	0.477722565136841	0.282644243771766	0.796839150254942	0.0330522933860949	0.985527002415644	1
Merged-chr1-85257632-1	chr1	85257532	85257732	+	653.0	f1_balb.idr	intron (NM_175219, intron 3 of 7)	intron (NM_175219, intron 3 of 7)	12934.0	NM_175219	620078.0	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik	RIKEN cDNA C130026I21 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165334636-2	chr2	165334536	165334736	+	845.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR51A_Mm|LTR|ERVK?	-8157.0	NM_207706	140579.0	Mm.35064	NM_080287	ENSMUSG00000017670	Elmo2	1190002F24Rik|CED-12	engulfment and cell motility 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-60829219-2	chr11	60829119	60829319	+	669.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MDa|LINE|L1	-1412.0	NM_001172112	216820.0	Mm.21475	NM_145428	ENSMUSG00000042569	Dhrs7b	BC003479|C79874|C80074|PexRAP	dehydrogenase/reductase (SDR family) member 7B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56327492-2	chr17	56327392	56327592	+	615.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172132, intron 1 of 22)	intron (NM_172132, intron 1 of 22)	1442.0	NM_001357909	193796.0	Mm.45047	NM_172132	ENSMUSG00000024201	Kdm4b	4732474L06Rik|Jmjd2b	lysine (K)-specific demethylase 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-80340924-4	chr1	80340842	80341042	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001313728)	promoter-TSS (NM_001313728)	-252.0	NM_016716	26554.0	Mm.12665	NM_016716	ENSMUSG00000004364	Cul3	KIAA0617	cullin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-62227773-4	chr18	62227698	62227898	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47698.0	NM_001013754	225609.0	Mm.296917	NM_001013754	ENSMUSG00000054589	Gm9949	EG225609	predicted gene 9949	protein-coding	2.34425032554805	1.85354511099172	1.47930622501628	3.06527337387658	3.23556316622184	3.70400918343241	4.35579738941552	2.98650232249301	2.25417858473033	0.00255826430411178	0.0402219895233493
Merged-chr3-96098315-4	chr3	96098226	96098426	+	822.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6201.0	NM_001025613	229603.0	Mm.272336	NM_001025613	ENSMUSG00000038495	Otud7b	2900060B22Rik|4930463P07Rik|AI462125|CEZANNE|Trabid2|Za20d1	OTU domain containing 7B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-114257846-2	chr6	114257746	114257946	+	949.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24789.0	NM_178703	232333.0	Mm.5260	NM_178703	ENSMUSG00000030310	Slc6a1	A730043E01|GABATHG|GABATR|GAT-1|Gabt|Gabt1|Gat1|XT-1|Xtrp1	solute carrier family 6 (neurotransmitter transporter, GABA), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91906916-2	chr16	91906816	91907016	+	659.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010587, intron 35 of 38)	intron (NM_010587, intron 35 of 38)	24714.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131067183-2	chr1	131067083	131067283	+	661.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008551, intron 1 of 9)	intron (NM_008551, intron 1 of 9)	30660.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46043576-2	chr19	46043476	46043676	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113408, intron 1 of 10)	intron (NM_001113408, intron 1 of 10)	1735.0	NM_001113408	16825.0	Mm.327442	NM_010697	ENSMUSG00000025223	Ldb1	CLIM2|NLI	LIM domain binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-21788064-2	chr13	21787964	21788164	+	695.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178184)	promoter-TSS (NM_178184)	576.0	NM_001290466	319188.0	Mm.264645	NM_178202	ENSMUSG00000069308	Hist1h2bp	-	histone cluster 1, H2bp	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-8965869-2	chr19	8965769	8965969	+	657.099976	f1_balb.idr|f1_c57bl6.idr	exon (NM_197993, exon 9 of 9)	exon (NM_197993, exon 9 of 9)	-1172.0	NM_026007	67160.0	Mm.247762	NM_026007	ENSMUSG00000071644	Eef1g	2610301D06Rik|AA407312|EF1G	eukaryotic translation elongation factor 1 gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-137404874-2	chr7	137404774	137404974	+	680.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029886, intron 1 of 3)	RMER5|LTR|ERV1	5882.0	NM_029886	77252.0	Mm.29184	NM_029886	ENSMUSG00000040139	9430038I01Rik	-	RIKEN cDNA 9430038I01 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132803748-3	chr4	132803644	132803844	+	808.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-7380.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-40647960-4	chr8	40647880	40648080	+	895.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-13188.0	NM_001040699	54384.0	Mm.294871	NM_019433	ENSMUSG00000039431	Mtmr7	-	myotubularin related protein 7	protein-coding	3.2742504883276	4.32319371187331	2.45882061932576	4.52626232187777	2.57170088186187	3.32194153101204	4.00346171487766	3.39138960010945	-0.680730411718287	0.285764375188669	0.79047889608285
Merged-chr5-74951513-4	chr5	74951416	74951616	+	869.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045866, intron 1 of 4)	intron (NR_045866, intron 1 of 4)	2322.0	NR_045866	619945.0	Mm.359372	NM_001037908	ENSMUSG00000072874	Gm6116	EG619945	predicted gene 6116	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-135723844-2	chr1	135723744	135723944	+	639.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360782, intron 1 of 5)	intron (NM_001360782, intron 1 of 5)	3781.0	NM_001360782	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-45034222-4	chr2	45034090	45034290	+	870.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355291, intron 2 of 9)	intron (NM_001355291, intron 2 of 9)	-11013.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-119828934-2	chr8	119828834	119829034	+	662.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028071, intron 2 of 3)	intron (NM_028071, intron 2 of 3)	11645.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-95811014-2	chr11	95810914	95811114	+	698.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13486.0	NM_153104	237928.0	Mm.133075	NM_153104	ENSMUSG00000050860	Phospho1	D11Moh36|Phospo1	phosphatase, orphan 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-95047205-6	chr4	95047151	95047351	+	732.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4971.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-53626323-4	chr8	53626257	53626457	+	975.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146208, intron 1 of 9)	intron (NM_146208, intron 1 of 9)	12708.0	NM_146208	234258.0	Mm.281749	NM_146208	ENSMUSG00000039396	Neil3	AI449477|BC034753|C85903	nei like 3 (E. coli)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-61985280-7	chr15	61985198	61985398	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010849)	promoter-TSS (NM_010849)	-43.0	NM_001177354	17869.0	Mm.2444	NM_010849	ENSMUSG00000022346	Myc	AU016757|Myc2|Niard|Nird|bHLHe39	myelocytomatosis oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-29128982-4	chr7	29128859	29129059	+	843.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-3808.0	NM_009109	20190.0	Mm.439745	NM_009109	ENSMUSG00000030592	Ryr1	AI528790|RYR-1|Ryr|skrr	ryanodine receptor 1, skeletal muscle	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4222318-2	chr19	4222218	4222418	+	869.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001310038, exon 4 of 4)	exon (NM_001310038, exon 4 of 4)	7929.0	NM_001310039	56708.0	Mm.347919	NM_019952	ENSMUSG00000040663	Clcf1	BSF-3|Bsf3|CLC|NNT-1	cardiotrophin-like cytokine factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-19669104-4	chr10	19668998	19669198	+	915.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43489.0	NM_172786	237313.0	Mm.234667	NM_172786	ENSMUSG00000020007	Il20ra	E230031K19	interleukin 20 receptor, alpha	protein-coding	2.14893469917572	1.32637520012462	1.29023330140023	1.71739123209616	2.16793099056748	1.70138405285986	1.78267934687049	1.05284511851786	0.191132470351135	0.8678798421676	0.998431161219273
Merged-chr9-20923503-2	chr9	20923403	20923603	+	646.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199432, intron 18 of 38)	intron (NM_001199432, intron 18 of 38)	-9339.0	NR_106049	102466802.0		NR_106049	ENSMUSG00000099147	Mir7081	Gm27904|mmu-mir-7081	microRNA 7081	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-98314160-3	chr7	98314062	98314262	+	789.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360615, intron 1 of 10)	intron (NM_001360615, intron 1 of 10)	-4620.0	NM_025408	66190.0	Mm.334041	NM_025408	ENSMUSG00000030760	Acer3	1110057L18Rik|5430429L08Rik|AV015045|Phca|aPHC	alkaline ceramidase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34247173-2	chr17	34247073	34247273	+	780.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	8268.0	NM_010389	15002.0	Mm.327358	NM_010389	ENSMUSG00000041538	H2-Ob	A-beta-2|A-beta2|H-2Ab|H-2I|H-2Ob|H2-Ab|H2-Ab2|H2-IAb2|Ob	histocompatibility 2, O region beta locus	protein-coding	0.619762733768584	-0.06592386084595	-0.0708806284992175	-0.0747008588719083	0.295066069786357	-0.0648056780332849	-0.0697878988558481	0.348275771816162	-0.0617484923720405	0.978653511626601	1
Merged-chr18-39763678-4	chr18	39763594	39763794	+	981.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9803.0	NM_011033	18459.0	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-38812686-3	chr16	38812582	38812782	+	987.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029042, intron 3 of 3)	B3A|SINE|B2	-12479.0	NM_178924	22268.0	Mm.130793	NM_178924	ENSMUSG00000049436	Upk1b	AI413235|Tspan20|UPIb|Upk1	uroplakin 1B	protein-coding	0.676904256874537	1.53265040886699	0.703662021598036	1.41809507685996	1.12976716645774	0.719197929677542	1.58586134630061	1.05503267661547	0.0465355030279429	0.975222204076409	0.998431161219273
Merged-chr3-54797488-2	chr3	54797388	54797588	+	565.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_019483, exon 6 of 6)	exon (NM_019483, exon 6 of 6)	10303.0	NM_133231	170767.0	Mm.185735	NM_133231	ENSMUSG00000036615	Rfxap	5730495K23Rik	regulatory factor X-associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-12745495-3	chr2	12745387	12745587	+	931.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-178554.0	NM_008961	19212.0	Mm.229322	NM_008961	ENSMUSG00000026730	Pter	AI790318|Mpr56-1	phosphotriesterase related	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-3331937-1	chr11	3331837	3332037	+	904.0	f0_balb.idr	exon (NM_178149, exon 2 of 6)	exon (NM_178149, exon 2 of 6)	1206.0	NM_178149	216505.0	Mm.390323	NM_178149	ENSMUSG00000034614	Pik3ip1	1500004A08Rik|5830455E04Rik|Crkd|Hgfl	phosphoinositide-3-kinase interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141642258-4	chr4	141642172	141642372	+	949.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347237, intron 3 of 18)	intron (NM_001347237, intron 3 of 18)	-18438.0	NM_001013780	384071.0	Mm.295682	NM_001013780	ENSMUSG00000040740	Slc25a34	Gm1369	solute carrier family 25, member 34	protein-coding	4.22749694166909	3.88452616305957	3.25718409733055	4.35577305497481	3.19429842934303	1.77715570250903	3.97663989211564	2.53717979025125	-1.29189624168347	0.0468619300964298	0.313523192112567
Merged-chr3-98057141-4	chr3	98057029	98057229	+	976.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010928, intron 2 of 33)	intron (NM_010928, intron 2 of 33)	43591.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81852123-1	chr15	81852023	81852223	+	581.0	f1_balb.idr	intron (NM_020507, intron 1 of 1)	B1F2|SINE|Alu	6203.0	NM_020507	57259.0	Mm.323595	NM_020507	ENSMUSG00000048546	Tob2	2900090N22Rik|4930545K18Rik|AV071822|mKIAA1663	transducer of ERBB2, 2	protein-coding	0.608317928986827	1.20539145254714	0.633054899836647	0.815865203445465	0.610644802098449	1.35254304619881	1.60193472974581	1.24509418680687	1.91227717984948	0.219443629914178	0.710694080900748
Merged-chr11-58107212-2	chr11	58107112	58107312	+	692.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356477, intron 1 of 6)	intron (NM_001356477, intron 1 of 6)	2983.0	NM_001356477	69125.0	Mm.28910	NM_026949	ENSMUSG00000020515	Cnot8	1500015I04Rik|1810022F04Rik|AA536816|AU015770|AU043059	CCR4-NOT transcription complex, subunit 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-35136797-3	chr8	35136690	35136890	+	999.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-171100.0	NM_175091	21951.0	Mm.88364	NM_175091	ENSMUSG00000031529	Tnks	4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	protein-coding	4.81126761717253	4.16593195427337	4.3909688013632	5.32019307366606	2.4418173959803	1.61247974586215	1.5300825560644	2.24275352411002	-4.26162965692517	4.55660977135144e-10	8.03973588774626e-08
Merged-chr15-88744525-2	chr15	88744425	88744625	+	647.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-7186.0	NM_181412	223773.0	Mm.396622	NM_181412	ENSMUSG00000034333	Zbed4	1700009F06Rik	zinc finger, BED type containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70777926-2	chr8	70777826	70778026	+	979.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_029440)	TTS (NR_029440)	1064.0	NR_029440	72093.0	Mm.271208	NR_029440		2010320M18Rik	-	RIKEN cDNA 2010320M18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-6713723-4	chr2	6713641	6713841	+	984.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110232, intron 4 of 15)	intron (NM_001110232, intron 4 of 15)	7921.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-100444074-2	chr3	100443974	100444174	+	688.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17669.0	NR_040543	73806.0	Mm.396549	NR_040543	ENSMUSG00000086923	4930406D18Rik	-	RIKEN cDNA 4930406D18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126595644-4	chr8	126595504	126595704	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2168.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-23189451-3	chr1	23189321	23189521	+	823.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-82848.0	NR_029533	387225.0		NR_029533	ENSMUSG00000065405	Mir30a	Mirn30a|mir-30a|mmu-mir-30a	microRNA 30a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-128738177-4	chr7	128738076	128738276	+	945.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145955, intron 1 of 15)	intron (NM_145955, intron 1 of 15)	2253.0	NM_145955	210711.0	Mm.58882	NM_145955	ENSMUSG00000048170	Mcmbp	1110007A13Rik|AU017382|BC025641|MCM-BP	minichromosome maintenance complex binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-43358007-2	chr11	43357907	43358107	+	953.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16454.0	NR_029558	387164.0		NR_029558	ENSMUSG00000065601	Mir146	Mirn146|miR-146a|mmu-mir-146	microRNA 146	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-80881917-4	chr13	80881809	80882009	+	955.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1475.0	NR_153410	105171.0	Mm.423137	NM_001042591	ENSMUSG00000074794	Arrdc3	AI450344|mKIAA1376	arrestin domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-88113388-6	chr17	88113272	88113472	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M5|LINE|L1	-12140.0	NM_001190356	225058.0	Mm.312053	NM_001190356		Gm4832	EG225058	predicted gene 4832	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-22357981-4	chr16	22357890	22358090	+	998.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	63002.0	NR_153764	100043507.0		NR_153764		Gng5-ps	Gm15776	G protein subunit gamma 5, pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-73423903-4	chr15	73423801	73424001	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358045)	promoter-TSS (NM_001358045)	-710.0	NM_001358045	14083.0	Mm.254494	NM_007982	ENSMUSG00000022607	Ptk2	FADK 1|FAK|FRNK|Fadk|p125FAK	PTK2 protein tyrosine kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117960192-4	chr11	117960085	117960285	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9181.0	NM_007707	12702.0	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-100729471-4	chr15	100729345	100729545	+	972.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161767)	promoter-TSS (NM_001161767)	-69.0	NM_172451	207839.0	Mm.22969	NM_172451	ENSMUSG00000037280	Galnt6	4632410F13|AW047994|GalNAc-T6	polypeptide N-acetylgalactosaminyltransferase 6	protein-coding	2.01659788529548	2.61448285126947	1.90539999221162	2.53734580157931	1.19080320675754	1.29698876230381	2.71948610035777	2.46197332240008	-0.436939892174262	0.672484117285642	0.99440487726309
Merged-chr10-77296280-2	chr10	77296180	77296380	+	954.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001024838, intron 10 of 11)	intron (NM_001024838, intron 10 of 11)	36980.0	NM_030262	80294.0	Mm.203556	NM_030262	ENSMUSG00000020260	Pofut2	2310011G23Rik|AI256847|BC003494|C21orf80|FUT13	protein O-fucosyltransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-31887728-4	chr5	31887625	31887825	+	993.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144541, intron 6 of 11)	intron (NM_144541, intron 6 of 11)	189675.0	NM_144541	107976.0	Mm.482126	NM_144541	ENSMUSG00000052139	Babam2	6030405P19Rik|AI429776|B830038C02Rik|Bre	BRISC and BRCA1 A complex member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69260933-4	chr11	69260816	69261016	+	882.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23894.0	NM_008192	14919.0	Mm.291816	NM_008192	ENSMUSG00000020890	Gucy2e	GC-E|GC1|ROS-GC1	guanylate cyclase 2e	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-98360670-1	chr7	98360570	98360770	+	1000.0	f1_balb.idr	intron (NM_001168540, intron 1 of 2)	intron (NM_001168540, intron 1 of 2)	618.0	NM_001168540	244152.0	Mm.25317	NM_001024619	ENSMUSG00000049580	Tsku	9530051K01Rik|E2ig4|Lrrc54|Tsk	tsukushi, small leucine rich proteoglycan	protein-coding	1.73074507367707	1.07901434013615	1.88348143238693	1.25511193837805	1.74557869736668	1.96859118176796	2.19765915710738	1.26017486811757	0.932653127472447	0.410827403708256	0.894256659801134
Merged-chr13-101522994-1	chr13	101522894	101523094	+	614.0	f1_balb.idr	Intergenic	Intergenic	-125414.0	NR_046187	78136.0	Mm.399065	NR_046187		4922502H24Rik	-	RIKEN cDNA 4922502H24 gene	ncRNA	0.381219745578622	-0.168843228573872	-0.173779349762846	-0.177589680057879	-0.0347778722489263	-0.167730915181151	-0.172690416535958	0.553655868190146	0.709326521129807	0.764228290639345	1
Merged-chr17-33979587-4	chr17	33979469	33979669	+	878.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_004446)	promoter-TSS (NR_004446)	-778.0	NR_004446	630499.0	Mm.440940	NM_001081015		H2-K2	EG630499|Gm7035|H-2K1|H-2K1K|H-2K2|H2-K1	histocompatibility 2, K region locus 2	pseudo	4.00959875018077	4.17653660825751	4.10460486214617	3.87488917629531	3.50949415334446	3.92729375362792	3.94501948260907	3.75929819292364	-0.35751428406773	0.426270873755455	0.902023751857747
Merged-chr7-126667701-3	chr7	126667598	126667798	+	768.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029339, intron 4 of 9)	L1MC4|LINE|L1	8720.0	NM_133670	20887.0	Mm.368982	NM_133670	ENSMUSG00000030711	Sult1a1	AI266890|PST|ST1A1|ST1A4|Stp|Stp1|mSTp1	sulfotransferase family 1A, phenol-preferring, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-11904789-4	chr13	11904658	11904858	+	848.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023868, intron 3 of 104)	(TG)n|Simple_repeat|Simple_repeat	202187.0	NM_023868	20191.0	Mm.239871	NM_023868	ENSMUSG00000021313	Ryr2	9330127I20Rik|RYR-2	ryanodine receptor 2, cardiac	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-76525936-3	chr5	76525851	76526051	+	950.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER20|DNA|hAT-Charlie	-3356.0	NM_001359372	69940.0	Mm.403233	NM_027270	ENSMUSG00000036435	Exoc1	2810407P21Rik|A730011E05Rik|SEC3|Sec3l1|Sec3p	exocyst complex component 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-57639267-3	chr1	57639162	57639362	+	970.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-135599.0	NM_144882	67198.0	Mm.159989	NM_144882	ENSMUSG00000038305	Spats2l	2810022L02Rik|A230104H11Rik|AA987173|AI480531|AI842453|AW413586	spermatogenesis associated, serine-rich 2-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21917226-2	chr9	21917126	21917326	+	602.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_031874, intron 1 of 4)	intron (NM_031874, intron 1 of 4)	957.0	NM_031874	19340.0	Mm.260157	NM_031874	ENSMUSG00000019066	Rab3d	C130057E11Rik	RAB3D, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-95898162-4	chr5	95898043	95898243	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58796.0	NM_018866	55985.0	Mm.10116	NM_018866	ENSMUSG00000023078	Cxcl13	4631412M08Rik|ANGIE2|Angie|BCA-1|BLC|BLR1L|Scyb13	chemokine (C-X-C motif) ligand 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-21174665-1	chr11	21174565	21174765	+	544.0	f1_c57bl6.idr	Intergenic	Intergenic	-64367.0	NM_139061	245944.0	Mm.170103	NM_139061	ENSMUSG00000020128	Vps54	Hcc8|Vps54l|mSLP8|wr	VPS54 GARP complex subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-80032746-2	chr8	80032646	80032846	+	757.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_020259, intron 4 of 12)	intron (NM_020259, intron 4 of 12)	25262.0	NM_020259	15245.0	Mm.254493	NM_020259	ENSMUSG00000064325	Hhip	Hhip1	Hedgehog-interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-17967549-2	chr5	17967449	17967649	+	635.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081143, intron 1 of 7)	Lx8|LINE|L1	4979.0	NM_001081143	242851.0	Mm.332230	NM_001081143	ENSMUSG00000028777	Gnat3	Ggust|Gtn	guanine nucleotide binding protein, alpha transducing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-44630517-6	chr10	44630390	44630590	+	839.611084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-171742.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28788056-1	chr7	28787956	28788156	+	540.0	f1_c57bl6.idr	promoter-TSS (NM_177158)	promoter-TSS (NM_177158)	-913.0	NM_001358916	320435.0	Mm.74632	NM_177158	ENSMUSG00000051735	Rinl	5830482F20Rik|9930116N10Rik	Ras and Rab interactor-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-107933692-2	chr4	107933592	107933792	+	619.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-10103.0	NM_009949	12896.0	Mm.307620	NM_009949	ENSMUSG00000028607	Cpt2	AI323697|CPTII	carnitine palmitoyltransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-105169880-4	chr1	105169782	105169982	+	955.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-186125.0	NR_151539	100504568.0	Mm.321153	NR_151538	ENSMUSG00000097482	Gm17634	-	predicted gene, 17634	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115678598-2	chr11	115678498	115678698	+	574.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001313936, intron 2 of 5)	RMER6A|LTR|ERVK	20936.0	NM_001313937	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-98965704-2	chr9	98965604	98965804	+	602.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10097.0	NM_012020	26927.0	Mm.151239	NM_012020	ENSMUSG00000050397	Foxl2	AU045128|BPES|PINTO|Pfrk	forkhead box L2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-65397397-4	chr3	65397292	65397492	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4839.0	NM_026155	67437.0	Mm.232728	NM_026155	ENSMUSG00000027828	Ssr3	0610038P07Rik|AL022999|AU022074|AW553833|TRAPG	signal sequence receptor, gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-91852305-2	chr12	91852205	91852405	+	542.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-3148.0	NM_011344	20338.0	Mm.250605	NM_011344	ENSMUSG00000020964	Sel1l	AW493766|Sel1h|mKIAA4137	sel-1 suppressor of lin-12-like (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35196488-2	chr17	35196464	35196664	+	856.75	f1_balb.idr|f1_c57bl6.idr	TTS (NM_008518)	TTS (NM_008518)	1592.0	NR_105939	102465588.0		NR_105939	ENSMUSG00000098291	Mir6973a	Gm27967|mmu-mir-6973a	microRNA 6973a	ncRNA	1.9006611375215	1.01212862427198	0.990418762396156	1.38527055084565	1.82396889378265	1.01693894646828	2.19225730178027	2.41263485895324	1.69787171319657	0.174682354941101	0.64338916082288
Merged-chr19-43511271-3	chr19	43511157	43511357	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010324, intron 2 of 8)	intron (NM_010324, intron 2 of 8)	13348.0	NM_010324	14718.0	Mm.19039	NM_010324	ENSMUSG00000025190	Got1	AI789014|Got-1|cAspAT|cCAT	glutamic-oxaloacetic transaminase 1, soluble	protein-coding	1.00882358263924	1.71773987178712	2.11370658322685	0.485527631598901	0.464994939577115	0.521019823080641	0.76297358533373	0.488005669141047	-4.30495965971895	0.00890248992536275	0.100261646549908
Merged-chr17-87083439-2	chr17	87083339	87083539	+	662.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME4b|LINE|L1	-24240.0	NM_019654	56468.0	Mm.126885	NM_019654	ENSMUSG00000037104	Socs5	1810018L08Rik|Cish5|mKIAA0671	suppressor of cytokine signaling 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120685011-2	chr8	120684911	120685111	+	806.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16691.0	NM_001293559	12857.0	Mm.386758	NM_009941	ENSMUSG00000031818	Cox4i1	AL024441|COX|COX IV-1|COXIV|Cox4|Cox4a|IV-1	cytochrome c oxidase subunit 4I1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-50690486-4	chr10	50690403	50690603	+	992.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198007, intron 14 of 41)	MTC|LTR|ERVL-MaLR	97834.0	NM_198007	77987.0	Mm.222497	NM_198007	ENSMUSG00000038774	Ascc3	ASC1p200|B630009I04Rik|BC023451|D430001L07Rik|D630041L21|Helic1|RNAH	activating signal cointegrator 1 complex subunit 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-11081151-3	chr19	11081034	11081234	+	845.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022430)	promoter-TSS (NM_022430)	-31.0	NM_022430	64381.0	Mm.34460	NM_022430	ENSMUSG00000024730	Ms4a8a	2010004L09Rik|AI481240|CD20L5|Ms4a8	membrane-spanning 4-domains, subfamily A, member 8A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120818318-2	chr11	120818218	120818418	+	569.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007988, intron 10 of 42)	intron (NM_007988, intron 10 of 42)	6229.0	NM_007988	14104.0	Mm.236443	NM_007988	ENSMUSG00000025153	Fasn	A630082H08Rik|FAS	fatty acid synthase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167470567-2	chr2	167470467	167470667	+	587.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001304542, intron 12 of 15)	intron (NM_001304542, intron 12 of 15)	-22078.0	NM_030743	81018.0	Mm.22225	NM_030743	ENSMUSG00000006418	Rnf114	1110008J21Rik|AI225886|AW549494|Zfp228|Zfp313|Znf228	ring finger protein 114	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-134082087-4	chr4	134081926	134082126	+	844.75	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001162970, exon 12 of 20)	exon (NM_001162970, exon 12 of 20)	13047.0	NM_013706	23833.0	Mm.24130	NM_013706	ENSMUSG00000000682	Cd52	AI463198|B7|B7-Ag|CAMPATH-1|CLS1|MB7	CD52 antigen	protein-coding	0.821370773455194	0.641259469786373	0.295569447442085	0.582067432466588	0.832616121093048	0.303005094377238	0.469596385214797	0.291713322351079	-0.641729761680477	0.724551102948183	1
Merged-chr6-72599343-4	chr6	72599242	72599442	+	863.93335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144917)	promoter-TSS (NM_144917)	714.0	NM_026159	67442.0	Mm.305108	NM_026159	ENSMUSG00000056666	Retsat	0610039N19Rik|C80029|MMT-7|Ppsig	retinol saturase (all trans retinol 13,14 reductase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100358634-2	chr11	100358534	100358734	+	749.583313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2493.0	NM_010404	15114.0	Mm.281700	NM_010404	ENSMUSG00000006930	Hap1	HAP-1	huntingtin-associated protein 1	protein-coding	0.524901708385832	0.60290011300178	0.385176096090875	0.378492152092816	0.786101481914406	1.17690348380588	0.387078635031095	1.15805351606428	2.89627227459157	0.104031983052154	1
Merged-chr15-59486301-4	chr15	59486202	59486402	+	885.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026746, intron 4 of 6)	intron (NM_026746, intron 4 of 6)	112104.0	NM_001164604	68501.0	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	1.44589526310386	0.765036004246249	0.952006014212081	1.7051920635924	1.16345462059229	1.16673867528741	0.755635127778907	1.22710351961892	-0.792958486842036	0.570751673106288	0.962772318014235
Merged-chr6-29164746-4	chr6	29164654	29164854	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133925)	promoter-TSS (NM_133925)	-30.0	NM_133925	68272.0	Mm.40802	NM_026650	ENSMUSG00000029701	Rbm28	2810480G15Rik|AI503051	RNA binding motif protein 28	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-79253295-3	chr3	79253218	79253418	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045502, intron 2 of 2)	intron (NR_045502, intron 2 of 2)	40399.0	NR_045502	70924.0	Mm.444622	NR_045502	ENSMUSG00000104585	4921511C10Rik	-	RIKEN cDNA 4921511C10 gene	ncRNA	3.39166278413798	4.3471782971964	4.44589180706468	3.36703627419035	2.23012505788389	1.55773894791318	1.48956439374782	3.02928325993259	-2.83625134530425	0.000114141961652308	0.00340665486543381
Merged-chr4-118437925-2	chr4	118437827	118438027	+	684.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023223)	promoter-TSS (NM_023223)	-584.0	NM_023223	107995.0	Mm.261764	NM_023223	ENSMUSG00000006398	Cdc20	2310042N09Rik|C87100|p55CDC	cell division cycle 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-37947367-2	chr16	37947267	37947467	+	958.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153394, intron 1 of 9)	intron (NM_153394, intron 1 of 9)	30871.0	NM_153394	239845.0	Mm.228018	NM_153394	ENSMUSG00000046961	Gpr156	Gababl	G protein-coupled receptor 156	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-115328781-4	chr10	115328691	115328891	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER70B|LTR|ERVL	-13200.0	NM_024454	216344.0	Mm.21936	NM_024454	ENSMUSG00000020132	Rab21	9630024B22	RAB21, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70152646-2	chr8	70152561	70152761	+	773.5	f0_balb.idr|f1_balb.idr	promoter-TSS (NM_001045484)	promoter-TSS (NM_001045484)	-100.0	NM_001045484	17259.0	Mm.432505	NM_008578	ENSMUSG00000079033	Mef2b	AI451606	myocyte enhancer factor 2B	protein-coding	1.48687798443456	2.43802943620624	1.45213167588147	1.56833223988793	0.981866063299527	1.96845550037642	1.26787908815227	1.83390577764807	-0.683877437158456	0.551029016683248	0.959171023623988
Merged-chr11-55033416-4	chr11	55033285	55033485	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001110211)	promoter-TSS (NM_001110211)	86.0	NR_138556	11749.0	Mm.265347	NM_013472	ENSMUSG00000018340	Anxa6	AW107198|Anx6|AnxVI|Cabm|Camb	annexin A6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-92024546-4	chr2	92024459	92024659	+	948.008301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011957)	promoter-TSS (NM_011957)	-389.0	NM_011957	26427.0	Mm.10353	NM_011957	ENSMUSG00000027230	Creb3l1	Oasis	cAMP responsive element binding protein 3-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-154658735-2	chr2	154658635	154658835	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029362, intron 1 of 4)	B1_Mur3|SINE|Alu	1709.0	NM_029362	75608.0	Mm.262480	NM_029362	ENSMUSG00000038467	Chmp4b	2010012F05Rik|C76846|Snf7-2	charged multivesicular body protein 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-103539600-2	chr14	103539500	103539700	+	582.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_022886, intron 5 of 30)	intron (NM_022886, intron 5 of 30)	26259.0	NM_022886	64929.0	Mm.244003	NM_022886	ENSMUSG00000022123	Scel	9230114I02Rik	sciellin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-99211360-2	chr5	99211260	99211460	+	579.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER30|DNA|hAT-Charlie	41567.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83635342-3	chr6	83635265	83635465	+	729.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	20751.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-57812579-4	chr6	57812493	57812693	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146168, intron 1 of 4)	L2a|LINE|L2	12532.0	NM_146168	232023.0	Mm.24642	NM_146168	ENSMUSG00000037788	Vopp1	AW146242|Ecop	vesicular, overexpressed in cancer, prosurvival protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-103439814-3	chr2	103439669	103439869	+	842.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010125, intron 3 of 6)	intron (NM_010125, intron 3 of 6)	15701.0	NM_010125	13711.0	Mm.20888	NM_010125	ENSMUSG00000027186	Elf5	ESE-2|ESE-5|ESE-5.	E74-like factor 5	protein-coding	1.76498275268394	0.519721853935988	0.504788425634219	0.492972844884703	1.78492742096477	0.523032004373726	0.508118009960287	1.19883597056096	0.520568019323511	0.870468798629407	0.998431161219273
Merged-chr2-166084499-1	chr2	166084399	166084599	+	847.0	f1_balb.idr	intron (NM_001252579, intron 8 of 20)	intron (NM_001252579, intron 8 of 20)	70786.0	NM_001355619	72043.0	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	0.179796796750964	0.203771628551348	0.815731693289596	0.189937805695349	0.181313163805226	0.88142541837478	0.197711309212154	0.979233945359349	1.3573742952846	0.511696856608622	1
Merged-chr12-32964004-1	chr12	32963904	32964104	+	641.0	f0_balb.idr	intron (NM_198710, intron 1 of 4)	intron (NM_198710, intron 1 of 4)	9818.0	NM_198710	19027.0	Mm.246304	NM_013635	ENSMUSG00000020570	Sypl	AI314763|AI604763|D12Ertd446e|PanI|Pphn|Sypl1	synaptophysin-like protein	protein-coding	0.638006441569016	0.742617980194267	0.394307218480169	0.682497100475189	1.0133571286666	0.750172368138691	0.569645005668288	0.390102649310754	0.537206002077	0.745850950918574	1
Merged-chr7-106954029-1	chr7	106953929	106954129	+	642.0	f0_balb.idr	Intergenic	Intergenic	2905.0	NM_206897	233670.0	Mm.296765	NM_206897	ENSMUSG00000036647	Olfr6	M50|MOR103-16	olfactory receptor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-140766544-4	chr6	140766429	140766629	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	139644.0	NM_001309436	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-21959095-4	chr3	21958998	21959198	+	738.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-117554.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-105705324-1	chr3	105705224	105705424	+	850.5	f0_balb.idr	promoter-TSS (NM_001163356)	promoter-TSS (NM_001163356)	-134.0	NM_001163356	109050.0	Mm.212591	NM_175398	ENSMUSG00000048458	Fam212b	6530418L21Rik|inka2	family with sequence similarity 212, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-84118398-4	chr17	84118284	84118484	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39724.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-143125699-2	chr2	143125599	143125799	+	618.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47306.0	NM_020595	57329.0	Mm.157751	NM_020595	ENSMUSG00000027416	Otor	CDRAP|Fdp|MIA|MIAL	otoraplin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-136679866-1	chr1	136679766	136679966	+	601.0	f1_balb.idr	Intergenic	B1_Mus2|SINE|Alu	-3530.0	NR_045324	100503460.0	Mm.30630	NR_045324	ENSMUSG00000097113	Gm19705	-	predicted gene, 19705	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36345477-3	chr18	36345346	36345546	+	902.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-3178.0	NM_001081365	66060.0	Mm.272527	NM_001081365	ENSMUSG00000046727	Cystm1	0610010O12Rik	cysteine-rich transmembrane module containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-91082153-4	chr8	91082088	91082288	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001282000, intron 4 of 20)	intron (NM_001282000, intron 4 of 20)	12131.0	NM_001282000	19651.0	Mm.235580	NM_011250	ENSMUSG00000031666	Rbl2	PRB2|RBR-2|Rb2|p130	RB transcriptional corepressor like 2	protein-coding	6.34272992551215	6.59932168847747	6.87130131403139	5.75704103809803	6.54858341568389	6.8959914595424	7.33334699080651	6.09109486831991	0.363998447489383	0.181148345681549	0.654249804782426
Merged-chr4-133166970-2	chr4	133166829	133167029	+	721.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_153423, intron 1 of 8)	ID_B1|SINE|B4	-28726.0	NR_105984	102466215.0		NR_105984	ENSMUSG00000099202	Mir7017	Gm27945|mmu-mir-7017	microRNA 7017	ncRNA	1.74674493829296	2.80042807043147	2.07287263996521	1.83840239228372	2.7560277524918	3.16559305455544	2.08917555842518	2.7328008546203	1.1818107891915	0.155586270269261	0.610928767307068
Merged-chr2-50705127-1	chr2	50705027	50705227	+	761.0	f0_balb.idr	Intergenic	Intergenic	-204557.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-138124216-3	chr1	138124110	138124310	+	916.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111316, intron 2 of 31)	intron (NM_001111316, intron 2 of 31)	50916.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116844438-2	chr11	116844338	116844538	+	665.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033398)	promoter-TSS (NM_033398)	923.0	NM_028865	74319.0	Mm.429312	NM_028865	ENSMUSG00000090266	Mettl23	1110005A03Rik|1500035B17Rik|4933424L15Rik	methyltransferase like 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-24806283-3	chr13	24806181	24806381	+	887.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024473, intron 3 of 4)	intron (NM_024473, intron 3 of 4)	4624.0	NM_024473	79555.0	Mm.266668	NM_024473	ENSMUSG00000019132	BC005537	8030460C05Rik|C78201	cDNA sequence BC005537	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-79921134-2	chr10	79921034	79921234	+	593.833313	f1_balb.idr|f1_c57bl6.idr	exon (NM_053244, exon 4 of 5)	exon (NM_053244, exon 4 of 5)	4163.0	NM_053244	114229.0	Mm.191035	NM_053244	ENSMUSG00000035773	Kiss1r	Gpr54|KiSS-1|kiSS-1R	KISS1 receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-64186018-4	chr14	64185931	64186131	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253715, intron 4 of 4)	AmnSINE1|SINE|Deu	81708.0	NM_028525	73382.0	Mm.481055	NM_028525	ENSMUSG00000021966	Prss52	1700049K14Rik|Tesp3	protease, serine 52	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-28809558-1	chr3	28809458	28809658	+	568.0	f0_balb.idr	Intergenic	Intergenic	4050.0	NM_026517	68028.0	Mm.21724	NM_026517	ENSMUSG00000039221	Rpl22l1	3110001N18Rik|AU041196	ribosomal protein L22 like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-8832414-2	chr16	8832314	8832514	+	762.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081400, intron 2 of 3)	B1_Mus2|SINE|Alu	2314.0	NM_001081400	69053.0	Mm.390868	NM_001081400	ENSMUSG00000022507	1810013L24Rik	1110017P05Rik|3010002C02Rik|AA792997|AW124177|Gm19906|R74903	RIKEN cDNA 1810013L24 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152602036-2	chr1	152601936	152602136	+	964.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346119, intron 2 of 17)	intron (NM_001346119, intron 2 of 17)	23181.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-11559811-4	chr19	11559684	11559884	+	971.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22935.0	NM_025658	66607.0	Mm.441056	NM_025658	ENSMUSG00000024678	Ms4a4d	2210417J23Rik	membrane-spanning 4-domains, subfamily A, member 4D	protein-coding	2.72335665814397	2.28505712899535	3.40458010699124	2.43975107895654	2.90773253525471	3.33360750858622	1.81044509601381	2.5771063038967	-0.0403879663392988	0.958484513539581	0.998431161219273
Merged-chr17-74456958-2	chr17	74456858	74457058	+	583.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033367, intron 1 of 8)	ORR1A2|LTR|ERVL-MaLR	2150.0	NM_001033367	268973.0	Mm.311884	NM_001033367	ENSMUSG00000039193	Nlrc4	9530011P19Rik|CLAN|CLAN1|CLANA|CLANB|CLANC|CLAND|Card12|IPAF	NLR family, CARD domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-75341774-2	chr18	75341674	75341874	+	864.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25314.0	NR_155535	102636262.0	Mm.421168	NR_155535		Gm20544	-	predicted gene 20544	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141554418-2	chr4	141554318	141554518	+	728.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MDa|LINE|L1	8256.0	NR_030695	320456.0	Mm.32859	NM_177163		B330016D10Rik	-	RIKEN cDNA B330016D10 gene	ncRNA	0.681954197680739	0.323288973306271	0.316330321772882	0.945950099732696	0.690803901208342	0.324855377097041	0.317866510505331	0.95390816141666	0.0331942307183445	0.985968853289364	1
Merged-chr14-73473797-4	chr14	73473685	73473885	+	881.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-36264.0	NM_026119	67381.0	Mm.282888	NM_026119	ENSMUSG00000022109	Med4	2410046H15Rik|DRIP36|HSPC126|TRAP36|Vdirp|Vdrip	mediator complex subunit 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-99411082-2	chr5	99410982	99411182	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 2 of 3)	L1_Mur3|LINE|L1	-158155.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-124348414-1	chr8	124348314	124348514	+	604.0	f1_c57bl6.idr	Intergenic	Intergenic	85522.0	NM_171824	209966.0	Mm.234233	NM_171824	ENSMUSG00000050751	Pgbd5	2900019M05Rik|AI854313	piggyBac transposable element derived 5	protein-coding	0.309838679158731	0.376639329430194	0.182215690314973	0.59324107510427	0.545253023841639	0.189400157005746	0.849400572958542	0.178484700581889	0.701923104635567	0.709955999812442	1
Merged-chr15-79950959-1	chr15	79950859	79951059	+	565.0	f1_c57bl6.idr	Intergenic	Intergenic	-18313.0	NM_144811	52609.0	Mm.323442	NM_144811	ENSMUSG00000053411	Cbx7	1600014J01Rik|AI851678|D15Ertd417e	chromobox 7	protein-coding	2.17315500522881	1.06845398424369	2.01607741122089	1.72673662579837	2.19271071062799	1.07333945099597	1.05128867914944	1.96550121416501	-0.350350454890212	0.778656750610422	0.998431161219273
Merged-chr18-32369985-4	chr18	32369902	32370102	+	861.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045403, intron 2 of 2)	Lx9|LINE|L1	-7215.0	NM_001083334	30948.0	Mm.4383	NM_009668	ENSMUSG00000024381	Bin1	ALP-1|Amphl|BRAMP-2|SH3P9	bridging integrator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-90689946-4	chr5	90689849	90690049	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49422.0	NM_001310656	73246.0	Mm.30172	NM_028478	ENSMUSG00000029370	Rassf6	1600016B17Rik	Ras association (RalGDS/AF-6) domain family member 6	protein-coding	3.28002391626033	4.48767606951865	4.3968615079003	3.27896232225098	4.24057887780936	4.24510962918354	4.27961052923238	2.27559292793732	-0.0140764628184912	0.980923297698835	0.998431161219273
Merged-chr15-102693092-4	chr15	102692982	102693182	+	812.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-21216.0	NR_030460	751542.0		NR_030460	ENSMUSG00000076009	Mir688	Mirn688|mmu-mir-688	microRNA 688	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-11008587-3	chr4	11008485	11008685	+	832.56665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175175)	promoter-TSS (NM_175175)	-966.0	NM_175175	71801.0	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-178414477-4	chr2	178414464	178414664	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001085501)	promoter-TSS (NM_001085501)	30.0	NM_001081289	71532.0	Mm.40216	NM_001081289	ENSMUSG00000070476	Fam217b	9030418K01Rik|AI851938	family with sequence similarity 217, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-164917052-4	chr2	164916948	164917148	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15-int|LTR|ERVL	-5298.0	NM_199027	329559.0	Mm.330776	NM_199027	ENSMUSG00000039834	Zfp335	1810045J01Rik|NIF-1|Nif1|Znf335	zinc finger protein 335	protein-coding	3.81558988723683	4.01386050024695	3.67169968096772	4.01120228112218	3.25246959776246	4.65714298109266	2.51703337618747	2.75571469801549	-0.422478769803521	0.487833846008492	0.933100831822173
Merged-chr6-108611871-4	chr6	108611765	108611965	+	890.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040757, intron 4 of 4)	ORR1E|LTR|ERVL-MaLR	11302.0	NR_040757	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	2.31985394634863	1.6266874338857	2.08053026077943	2.25405393008043	1.81530437246574	2.0149842009242	2.33550166120662	2.53758596720135	0.264995371475028	0.768268874820382	0.998431161219273
Merged-chr2-91136730-3	chr2	91136633	91136833	+	800.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001177720)	TTS (NM_001177720)	18589.0	NM_008653	17868.0	Mm.10728	NM_008653	ENSMUSG00000002100	Mybpc3	-	myosin binding protein C, cardiac	protein-coding	1.04693054505599	0.541033575172001	1.16779301246379	1.12336737370789	0.510308230983444	0.543404027211101	0.532783860760815	1.50331544780507	-0.524567477910568	0.758595442255381	0.998431161219273
Merged-chr7-35047355-2	chr7	35047255	35047455	+	878.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009884, exon 2 of 2)	3' UTR (NM_009884, exon 2 of 2)	9211.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-106721342-2	chr13	106721242	106721442	+	988.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	215616.0	NM_001360897	76582.0	Mm.132208	NM_029665	ENSMUSG00000042590	Ipo11	1700081H05Rik|2510001A17Rik|AI314624|AW555235|E330021B14Rik|Ranbp11	importin 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-11329648-4	chr19	11329566	11329766	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027836, intron 2 of 6)	L1MA4|LINE|L1	5029.0	NM_001276398	109225.0	Mm.491251	NM_027836	ENSMUSG00000024672	Ms4a7	9130422I10Rik|A430103C15Rik|CD20l4|CFFMA	membrane-spanning 4-domains, subfamily A, member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75594712-4	chr11	75594611	75594811	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008850, intron 2 of 11)	intron (NM_008850, intron 2 of 11)	5520.0	NR_110477	654359.0	Mm.439961	NR_110477		Gm12338	-	cytochrome c oxidase, subunit VIIc pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-50532153-4	chr9	50532047	50532247	+	794.012512	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_133217)	TTS (NM_133217)	-3506.0	NM_011220	19286.0	Mm.35856	NM_011220	ENSMUSG00000032067	Pts	PTPS	6-pyruvoyl-tetrahydropterin synthase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-59259660-2	chr4	59259560	59259760	+	647.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_105031)	promoter-TSS (NR_105031)	-391.0	NR_105031	101055769.0	Mm.421401	NR_105031		Gm12596	-	predicted gene 12596	ncRNA	-1.27480050717774	-0.604729833679879	-1.25573295904267	-1.26493563944758	-1.27428069156472	-1.24210192204986	-1.25319678955844	-1.26328836405502	-2.6632876257018	0.439827081912762	1
Merged-chr11-100705914-2	chr11	100705814	100706014	+	788.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038010, intron 15 of 17)	intron (NM_001038010, intron 15 of 17)	-1643.0	NM_030150	80861.0	Mm.271830	NM_030150	ENSMUSG00000017830	Dhx58	B430001I08Rik|D11Lgp2e|LPG2|Lgp2|RLR-3	DEXH (Asp-Glu-X-His) box polypeptide 58	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-13538774-4	chr13	13538702	13538902	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51607.0	NM_010748	17101.0	Mm.342337	NM_010748	ENSMUSG00000019726	Lyst	D13Sfk13|beige|bg	lysosomal trafficking regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-102144390-2	chr15	102144290	102144490	+	599.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_008344, exon 1 of 4)	5' UTR (NM_008344, exon 1 of 4)	204.0	NM_008344	16012.0	Mm.358609	NM_008344	ENSMUSG00000023046	Igfbp6	IGFBP-6	insulin-like growth factor binding protein 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-45747601-4	chr19	45747418	45747618	+	838.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008723)	TTS (NM_008723)	2045.0	NM_008723	18150.0	Mm.1406	NM_008723	ENSMUSG00000056209	Npm3	Nub1	nucleoplasmin 3	protein-coding	0.426655719096275	0.0526188204289469	0.0463981844451016	0.0415821863394813	0.0347503586397606	0.0540178235728977	0.851004777601235	0.604289345330032	2.04326494102867	0.354218261063452	1
Merged-chr8-84579784-2	chr8	84579686	84579886	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252060, intron 25 of 47)	intron (NM_001252060, intron 25 of 47)	83066.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	-0.576060941497188	-0.481721655349832	-0.820310301984888	-0.822367017973699	-0.570073301158975	-0.814378141634473	-0.819720606832733	-0.822008400115514	-1.07744855238879	0.707716612482925	1
Merged-chr7-132304649-3	chr7	132304603	132304803	+	861.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029935, intron 1 of 7)	intron (NM_029935, intron 1 of 7)	-10961.0	NR_028578	100043682.0	Mm.482794	NR_028578	ENSMUSG00000109270	Gm10584	-	predicted gene 10584	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-57545954-4	chr16	57545784	57545984	+	872.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 4 of 4)	intron (NM_001040397, intron 4 of 4)	-3358.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-120876421-4	chr10	120876328	120876528	+	925.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177092, intron 1 of 6)	MLT1I|LTR|ERVL-MaLR	18799.0	NR_038023	100504616.0	Mm.451174	NR_038023	ENSMUSG00000087480	Gm15910	-	predicted gene 15910	ncRNA	0.143347496051209	-0.309576159841709	0.348322733063154	-0.317091135179644	-0.177386620210729	-0.308618453283426	-0.312885154856892	-0.316520089041836	-2.78393268217113	0.257771258638618	1
Merged-chr3-157567512-2	chr3	157567412	157567612	+	689.666626	f1_balb.idr|f1_c57bl6.idr	exon (NM_011196, exon 1 of 3)	exon (NM_011196, exon 1 of 3)	620.0	NM_011196	19218.0	Mm.30424	NM_011196	ENSMUSG00000040016	Ptger3	EP3|Pgerep3|Ptgerep3	prostaglandin E receptor 3 (subtype EP3)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5815259-4	chr19	5815138	5815338	+	992.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12566.0	NR_002847	72289.0	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-123957022-4	chr9	123956912	123957112	+	925.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11680.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-125433285-3	chr1	125433211	125433411	+	946.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205386, intron 2 of 12)	intron (NM_001205386, intron 2 of 12)	2416.0	NM_001205386	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-86685505-4	chr10	86685407	86685607	+	971.65625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015572)	promoter-TSS (NR_015572)	-20.0	NR_015572	66263.0	Mm.392261	NR_015572	ENSMUSG00000097412	1810014B01Rik	-	RIKEN cDNA 1810014B01 gene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-127061139-4	chr4	127061062	127061262	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356311)	promoter-TSS (NM_001356311)	-8.0	NM_001356311	68310.0	Mm.273806	NM_026670	ENSMUSG00000043872	Zmym1	5830412B09Rik|AW209050	zinc finger, MYM domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-25678158-4	chr17	25678144	25678344	+	975.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38928.0	NM_022422	64337.0	Mm.171123	NM_022422	ENSMUSG00000025739	Gng13	1500031D04Rik|AB030194|Ggamma13	guanine nucleotide binding protein (G protein), gamma 13	protein-coding	3.2192573191537	3.7586467092684	4.04718040560072	2.80568224023414	2.67608506508807	2.72331410124563	3.43404414682449	3.74664569937118	-0.487082863253501	0.431662643189723	0.904679012727573
Merged-chr9-98614197-3	chr9	98614097	98614297	+	701.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12518.0	NM_025485	64655.0	Mm.17949	NM_025485	ENSMUSG00000032459	Mrps22	3100002P07Rik|Rpms22	mitochondrial ribosomal protein S22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-89684299-2	chr10	89684199	89684399	+	677.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198021, intron 1 of 17)	intron (NM_198021, intron 1 of 17)	1995.0	NM_001358843	213326.0	Mm.27651	NM_198021	ENSMUSG00000069539	Scyl2	AU015688|AW536445|BC030932|CVAK104|D10Ertd802e	SCY1-like 2 (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-67941110-3	chr14	67941015	67941215	+	777.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7543.0	NM_177780	68813.0	Mm.258155	NM_177780	ENSMUSG00000044447	Dock5	1110060D06Rik|AI666732|AI956923|BC016533|E130320D18|lr2|rlc	dedicator of cytokinesis 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-33666409-1	chr8	33666309	33666509	+	1000.0	f1_c57bl6.idr	intron (NM_010344, intron 1 of 12)	intron (NM_010344, intron 1 of 12)	13171.0	NM_010344	14782.0	Mm.283573	NM_010344	ENSMUSG00000031584	Gsr	AI325518|D8Ertd238e|Gr-1|Gr1	glutathione reductase	protein-coding	2.45534899005065	3.12891389695832	3.48508506283254	1.64151008654107	1.07057830397175	1.52696664442628	1.16949306159799	2.52063169434374	-2.36292926717465	0.0211431142550865	0.186168708476065
Merged-chr15-97833425-3	chr15	97833335	97833535	+	769.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001204280, intron 1 of 21)	intron (NM_001204280, intron 1 of 21)	-1668.0	NM_001204276	56233.0	Mm.384027	NM_019572	ENSMUSG00000022475	Hdac7	5830434K02Rik|HD7|HD7a|Hdac7a|mFLJ00062	histone deacetylase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-9900618-3	chr10	9900527	9900727	+	740.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081344, exon 1 of 26)	exon (NM_001081344, exon 1 of 26)	413.0	NM_001081344	78808.0	Mm.331751	NM_030191	ENSMUSG00000019790	Stxbp5	0710001E20Rik|4930565N16Rik|AW742610|LGL3|mKIAA1006	syntaxin binding protein 5 (tomosyn)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-66325919-2	chr17	66325819	66326019	+	596.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	123831.0	NM_172963	68617.0	Mm.33421	NM_172963	ENSMUSG00000052105	Mtcl1	1110012J17Rik|Ccdc165|D130071O13|Kiaa0802|Soga2|mKIAA0802|t8219b25	microtubule crosslinking factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-4375400-4	chr18	4375153	4375353	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361009)	promoter-TSS (NM_001361009)	-339.0	NM_001361008	67440.0	Mm.49826	NM_026157	ENSMUSG00000024234	Mtpap	0610027A18Rik|AW551379|Papd1	mitochondrial poly(A) polymerase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-34196778-4	chr19	34196671	34196871	+	901.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360718, intron 1 of 10)	intron (NM_001360718, intron 1 of 10)	3837.0	NM_001360718	76630.0	Mm.130952	NM_029682	ENSMUSG00000024776	Stambpl1	1700095N21Rik|8230401J17Rik|ALMalpha|AMSH-FP	STAM binding protein like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-57393077-3	chr1	57392986	57393186	+	924.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037742, intron 5 of 7)	intron (NM_001037742, intron 5 of 7)	-13462.0	NM_001081181	68115.0	Mm.275428	NM_001081181	ENSMUSG00000025971	Maip1	9430016H08Rik|AA409999|C78988	matrix AAA peptidase interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-154736342-1	chr2	154736242	154736442	+	585.0	f1_balb.idr	Intergenic	LTR16C|LTR|ERVL	-54768.0	NM_001139512	19383.0	Mm.221440	NM_023130	ENSMUSG00000027593	Raly	AI663842|Merc	hnRNP-associated with lethal yellow	protein-coding	1.00398458234808	1.75633364186052	1.31378773691657	2.38925205040451	2.1180632339794	1.77022392833299	2.56185482208327	1.0443310943259	0.65086603461513	0.580816016772544	0.966599221005409
Merged-chr8-13617401-2	chr8	13617301	13617501	+	678.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 2 of 23)	intron (NM_009025, intron 2 of 23)	-54940.0	NM_001080781	66501.0	Mm.46136	NM_025601	ENSMUSG00000031452	1700029H14Rik	-	RIKEN cDNA 1700029H14 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-104116635-4	chr8	104116517	104116717	+	979.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009868, intron 2 of 11)	intron (NM_009868, intron 2 of 11)	-10744.0	NR_131138	546096.0	Mm.252264	NR_131138	ENSMUSG00000110053	Gm29682	Gm45664	predicted gene, 29682	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-39745893-1	chr15	39745793	39745993	+	579.0	f0_balb.idr	promoter-TSS (NM_001289506)	promoter-TSS (NM_001289506)	-37.0	NM_001289506	75766.0	Mm.159563	NM_029422	ENSMUSG00000022303	Dcstamp	4833414I07Rik|DC-STAMP|FIND|Tm7sf4|mDC-STAMP	dendrocyte expressed seven transmembrane protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117384822-2	chr8	117384722	117384922	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028941, intron 2 of 20)	intron (NM_028941, intron 2 of 20)	35652.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-33033037-3	chr4	33032926	33033126	+	751.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355494, intron 1 of 6)	intron (NM_001355494, intron 1 of 6)	1646.0	NM_001355494	56228.0	Mm.259095	NM_019586	ENSMUSG00000028277	Ube2j1	0710008M05Rik|1110030I22Rik|NCUBE-1|Ncube|Ncube1|Ubc6p	ubiquitin-conjugating enzyme E2J 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99121582-2	chr15	99121482	99121682	+	784.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-5263.0	NM_139140	72572.0	Mm.276650	NM_139140	ENSMUSG00000051934	Spats2	2700012F11Rik|59kDa|Scr59|p59	spermatogenesis associated, serine-rich 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-89228313-4	chr9	89228201	89228401	+	954.80835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359993, intron 2 of 2)	L1MB2|LINE|L1	16917.0	NM_001359993	107885.0	Mm.486274	NM_026829	ENSMUSG00000066442	Mthfs	1110034I12Rik|2310020H23Rik|AI119695	5, 10-methenyltetrahydrofolate synthetase	protein-coding	3.23078651900215	4.00815648648112	3.57480424640417	3.329704514602	1.76826933046031	3.48600447506985	3.37039932973678	2.29974451620521	-1.05477903506209	0.121317546479261	0.546643694128403
Merged-chr17-33940516-6	chr17	33940452	33940652	+	988.8095089999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020603)	promoter-TSS (NM_020603)	-171.0	NM_020603	57315.0	Mm.2437	NM_020603	ENSMUSG00000024312	Wdr46	2310007I04Rik|Bing4|C78447|C78559	WD repeat domain 46	protein-coding	-2.18308165884198	-2.15547475440471	-2.16382331017202	-2.1706810624505	-2.18114370519566	-2.15366558754311	-2.03057248461154	-2.16945352807143	0.759018020146679	0.829933115115583	1
Merged-chr5-150840309-4	chr5	150840193	150840393	+	947.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-112314.0	NM_013823	16591.0	Mm.6500	NM_013823	ENSMUSG00000058488	Kl	alpha-kl	klotho	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-94543646-4	chr15	94543546	94543746	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029926)	promoter-TSS (NM_029926)	-14.0	NM_029926	266632.0	Mm.422858	NM_029926	ENSMUSG00000059883	Irak4	8430405M07Rik|9330209D03Rik|IRAK-4|NY-REN-64	interleukin-1 receptor-associated kinase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-35985625-2	chr16	35985525	35985725	+	748.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008465, intron 1 of 13)	B3|SINE|B2	2262.0	NM_008465	16646.0	Mm.3991	NM_008465	ENSMUSG00000022905	Kpna1	AW494490|IPOA5|NPI1|Rch2|mSRP1	karyopherin (importin) alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-132982932-1	chr1	132982832	132983032	+	572.0	f0_balb.idr	Intergenic	Intergenic	42484.0	NR_126506	17248.0	Mm.426531	NM_008575	ENSMUSG00000054387	Mdm4	4933417N07Rik|AA414968|AL023055|AU018793|AU021806|C85810|Mdmx	transformed mouse 3T3 cell double minute 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-125476445-3	chr1	125476380	125476580	+	662.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40753.0	NM_001205385	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-115652057-2	chr8	115651957	115652157	+	695.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54837.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-44276168-3	chr12	44276042	44276242	+	760.209534	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026164, intron 1 of 9)	L1MA4|LINE|L1	6988.0	NM_026164	67452.0	Mm.54126	NM_026164	ENSMUSG00000036257	Pnpla8	1200006O19Rik|AI467579|Ipla2(gamma)	patatin-like phospholipase domain containing 8	protein-coding	1.38639140270084	0.684759666255964	0.672495881478287	1.480810510338	1.40079311262603	0.687498318798339	0.675217201076164	1.49044404903919	0.0347542863780594	0.982803210253483	0.998431161219273
Merged-chr4-8380941-3	chr4	8380867	8381067	+	895.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-141926.0	NM_007592	12319.0	Mm.119320	NM_007592	ENSMUSG00000041261	Car8	AW546993|Ca8|Cals|Cals1|Carp|wdl	carbonic anhydrase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-86186805-3	chr15	86186720	86186920	+	761.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145475)	promoter-TSS (NM_145475)	-679.0	NM_145475	223753.0	Mm.222685	NM_145475	ENSMUSG00000035891	Cerk	AI848610|D330016D08Rik|mKIAA1646	ceramide kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-55257432-1	chr5	55257332	55257532	+	771.0	f1_c57bl6.idr	Intergenic	RLTR6-int|LTR|ERV1	907440.0	NR_038045	330086.0	Mm.254449	NM_177871	ENSMUSG00000105912	Gm10440	D130065D13	predicted gene 10440	ncRNA	0.229500956237556	1.02828926569032	0.831163663875673	0.245050661596262	0.231846152139575	1.56894934850556	0.25676504433023	0.246658481662423	0.475928762864077	0.804566589694456	0.998431161219273
Merged-chr14-61052380-4	chr14	61052274	61052474	+	952.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1-int|LTR|ERVL-MaLR	-5519.0	NM_013869	29820.0	Mm.281356	NM_013869	ENSMUSG00000060548	Tnfrsf19	AL023044|AW123854|TAJ|TAJ-ALPHA|TRADE|Troy	tumor necrosis factor receptor superfamily, member 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-74808319-4	chr1	74808220	74808420	+	973.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16301.0	NM_009518	22409.0	Mm.5130	NM_009518	ENSMUSG00000026167	Wnt10a	-	wingless-type MMTV integration site family, member 10A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-68089748-2	chr10	68089648	68089848	+	778.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	110178.0	NM_001359319	170799.0	Mm.209844	NM_133244	ENSMUSG00000037846	Rtkn2	B130039D23Rik|Mbf|Plekhk1	rhotekin 2	protein-coding	0.355115733675833	0.948942122957249	0.550266076637507	0.220071686760324	0.485250966736423	0.232757222132496	0.226377483249544	0.65061641217671	-0.906458869635319	0.623332392062438	1
Merged-chr14-25769166-4	chr14	25769062	25769262	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001101433)	promoter-TSS (NM_001101433)	-306.0	NM_001101433	71918.0	Mm.41904	NM_001101433	ENSMUSG00000055538	Zcchc24	2310047A01Rik	zinc finger, CCHC domain containing 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-35889766-2	chr18	35889666	35889866	+	584.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	35079.0	NM_001357459	67393.0	Mm.94560	NM_133687	ENSMUSG00000046668	Cxxc5	4930415K17Rik	CXXC finger 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-24585072-4	chr4	24584975	24585175	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149739, intron 17 of 24)	intron (NR_149739, intron 17 of 24)	88624.0	NM_199467	212377.0	Mm.120919	NM_199467	ENSMUSG00000045751	Mms22l	F730047E07Rik|Gm134	MMS22-like, DNA repair protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90445745-2	chr2	90445645	90445845	+	826.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 20 of 23)	intron (NM_008982, intron 20 of 23)	33429.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-134748373-2	chr5	134748273	134748473	+	594.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1050.0	NM_007925	13717.0	Mm.275320	NM_007925	ENSMUSG00000029675	Eln	AI385707|AI480567|E030024M20Rik	elastin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-36720915-4	chr5	36720807	36721007	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	-24886.0	NM_001081232	320661.0	Mm.26480	NM_177221	ENSMUSG00000029190	D5Ertd579e	9030221A05Rik|A930018H20Rik|Kiaa0232	DNA segment, Chr 5, ERATO Doi 579, expressed	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-4336440-7	chr18	4336357	4336557	+	989.5064699999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007746, intron 5 of 7)	intron (NM_007746, intron 5 of 7)	16496.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-34760252-2	chr6	34760152	34760352	+	700.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_145575, intron 6 of 11)	intron (NM_145575, intron 6 of 11)	-20180.0	NM_001289658	76223.0	Mm.150047	NM_178630	ENSMUSG00000038836	Agbl3	2900053G10Rik|4930431N21Rik|6530406M24Rik|CCP3	ATP/GTP binding protein-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-55691225-4	chr16	55691108	55691308	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CAGCC)n|Simple_repeat|Simple_repeat	130930.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119043998-2	chr11	119043898	119044098	+	804.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3085.0	NM_013926	30951.0	Mm.99953	NM_013926	ENSMUSG00000025578	Cbx8	Pc3	chromobox 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-113433984-4	chr2	113433885	113434085	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010230, intron 3 of 19)	MTD|LTR|ERVL-MaLR	-7079.0	NM_001285459	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-95598867-3	chr1	95598761	95598961	+	657.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009183, intron 4 of 4)	intron (NM_009183, intron 4 of 4)	68733.0	NM_009183	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-95905455-4	chr4	95905345	95905545	+	896.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113412, intron 14 of 15)	intron (NM_001113412, intron 14 of 15)	61590.0	NR_045777	319247.0	Mm.473527	NM_175680	ENSMUSG00000044125	9530080O11Rik	-	RIKEN cDNA 9530080O11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-23435169-1	chr1	23435069	23435269	+	572.0	f1_c57bl6.idr	Intergenic	RMER17C-int|LTR|ERVK	-51994.0	NM_001081079	70155.0	Mm.28013	NM_001081079	ENSMUSG00000026158	Ogfrl1	2210417C17Rik	opioid growth factor receptor-like 1	protein-coding	-0.423326305860828	-0.56142029843556	-0.565471533787383	-0.568602203744459	-0.419211686805391	-0.560508101240307	-0.564577374208391	0.267994805199717	2.67498211568403	0.29919401220324	1
Merged-chr3-150071054-2	chr3	150070954	150071154	+	570.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	796317.0	NR_040591	381482.0	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-45038810-3	chr16	45038719	45038919	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55192.0	NM_026439	67896.0	Mm.181074	NM_026439	ENSMUSG00000022665	Ccdc80	2610001E17Rik|DRO1|Ssg1|Urb	coiled-coil domain containing 80	protein-coding	0.6164168276062	1.01101223338669	1.32807229147401	1.07083298850738	1.0182918639601	0.850408835973301	0.637647720063762	1.18939109919845	-0.443075790991415	0.767116149004249	1
Merged-chr7-80025924-3	chr7	80025838	80026038	+	740.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175433)	promoter-TSS (NM_175433)	-290.0	NM_175433	209225.0	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-24853358-2	chr13	24853258	24853458	+	860.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081051, intron 1 of 20)	MTC|LTR|ERVL-MaLR	8227.0	NR_131787	210108.0	Mm.261514	NM_001081051	ENSMUSG00000006711	D130043K22Rik	4930451E12Rik|Kiaa0319	RIKEN cDNA D130043K22 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90563996-1	chr2	90563896	90564096	+	640.0	f1_balb.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	16651.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	-2.18243820993087	-2.15538464093652	-2.16356586349869	-2.17028616330028	-2.18053909940952	-2.15361173587851	-2.16171381403791	-2.0403552525549	0.759018020146679	0.829933115115583	1
Merged-chr18-77626133-2	chr18	77626033	77626233	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60997.0	NM_001164504	225743.0	Mm.23293	NM_001164504	ENSMUSG00000025427	Rnf165	2900024M11Rik|AI427432|Akd2|Ark2c|G630064H08Rik|Gm96	ring finger protein 165	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-94237497-2	chr16	94237397	94237597	+	601.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360045, intron 5 of 10)	intron (NM_001360045, intron 5 of 10)	52794.0	NM_001360045	110948.0	Mm.30921	NM_139145	ENSMUSG00000040820	Hlcs	410I21.SP6|D16Jhu34	holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-41069119-2	chr9	41069020	41069220	+	885.75	f0_balb.idr|f1_c57bl6.idr	intron (NM_176860, intron 1 of 13)	intron (NM_176860, intron 1 of 13)	10386.0	NM_001357412	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	3.2629658932906	1.94446734174184	1.65798262611316	3.22325222858443	2.97023459239336	1.95899684524255	1.89305148514978	2.31199151992625	-0.713653042623351	0.421800796071071	0.900322118218157
Merged-chr8-126667056-4	chr8	126666962	126667162	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73626.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120034466-2	chr11	120034366	120034566	+	882.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001198785, intron 1 of 13)	intron (NM_001198785, intron 1 of 13)	7315.0	NM_001198787	11302.0	Mm.6826	NM_007377	ENSMUSG00000025375	Aatk	AATYK|aatyk1|mKIAA0641	apoptosis-associated tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-41580072-4	chr3	41579974	41580174	+	937.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001130186, intron 1 of 10)	intron (NM_001130186, intron 1 of 10)	15194.0	NM_001130186	269424.0	Mm.286285	NM_172303	ENSMUSG00000025764	Jade1	AU041499|D530048A03Rik|Phf17|mKIAA1807	jade family PHD finger 1	protein-coding	1.43784215344816	0.886928896339869	2.1483493235971	1.24388601066212	1.02875006869935	0.890813627737285	1.81910857871592	1.53314725658533	-0.481370635788797	0.711465264422687	0.998431161219273
Merged-chr8-70548695-2	chr8	70548565	70548765	+	564.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007924, intron 1 of 11)	intron (NM_007924, intron 1 of 11)	8990.0	NM_007924	13716.0	Mm.271973	NM_007924	ENSMUSG00000070002	Ell	Ell1|Men	elongation factor RNA polymerase II	protein-coding	0.38813981975791	0.416153037566437	1.02785139692882	0.400004051229788	0.693323979639586	0.418187717526708	1.04000466602987	1.27760556000711	1.62551399972763	0.36593929321845	1
Merged-chr7-101910296-2	chr7	101910196	101910396	+	725.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025605, intron 3 of 4)	intron (NM_025605, intron 3 of 4)	-3937.0	NM_001081679	791260.0	Mm.475469	NM_001081679	ENSMUSG00000078630	Tomt	Comt2|F930017I19Rik	transmembrane O-methyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-40956933-2	chr15	40956833	40957033	+	607.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356998, intron 4 of 6)	intron (NM_001356998, intron 4 of 6)	-216768.0	NR_151516	100418302.0		NR_151516		4930555K19Rik	-	leucine rich repeat and sterile alpha motif containing 1 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-101590578-2	chr14	101590478	101590678	+	556.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081278, intron 1 of 18)	intron (NM_001081278, intron 1 of 18)	18613.0	NM_001081278	210789.0	Mm.320639	NM_173380	ENSMUSG00000033083	Tbc1d4	5930406J04Rik|A930035N22|AV295684|As160	TBC1 domain family, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27913149-1	chr17	27913049	27913249	+	604.0	f1_balb.idr	intron (NM_181413, intron 1 of 24)	MTD|LTR|ERVL-MaLR	3843.0	NM_181413	224650.0	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	0.518977259944263	1.1581737529993	0.54714205351892	0.536713601947706	1.12281987990327	0.563344487648398	1.8249548906943	1.20090833331132	2.43648139621678	0.140189471568534	0.584431299471601
Merged-chr7-127713258-4	chr7	127713164	127713364	+	975.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301283, intron 1 of 2)	intron (NM_001301283, intron 1 of 2)	327.0	NM_001301283	13019.0	Mm.389954	NM_007795	ENSMUSG00000042340	Ctf1	CT-1	cardiotrophin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-96474906-2	chr7	96474840	96475040	+	649.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011858, intron 3 of 32)	LTR79|LTR|ERVL	-132976.0	NR_046043	670727.0	Mm.421352	NR_046043	ENSMUSG00000085751	Gm15412	-	predicted gene 15412	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116306766-4	chr11	116306651	116306851	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016857)	promoter-TSS (NM_016857)	-1.0	NM_001347636	53413.0	Mm.22530	NM_016857	ENSMUSG00000020792	Exoc7	Exo70|sec70	exocyst complex component 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-113773490-2	chr5	113773390	113773590	+	835.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025526, intron 1 of 4)	intron (NM_025526, intron 1 of 4)	678.0	NM_025526	66383.0	Mm.29497	NM_025526	ENSMUSG00000025825	Iscu	2310020H20Rik|AA407971|Nifu|Nifun	iron-sulfur cluster assembly enzyme	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-115632378-4	chr8	115632273	115632473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	74521.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-9879676-4	chr3	9879584	9879784	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46005.0	NM_001195031	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	2.16487225058361	2.01747976890729	2.23161510602309	2.38487087046609	1.95489661582782	2.32710430733074	2.89185833858178	1.30644161468867	0.12393594003996	0.894941579373904	0.998431161219273
Merged-chr8-117340431-4	chr8	117340344	117340544	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	-8726.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-108721035-4	chr8	108720918	108721118	+	994.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007496, intron 1 of 9)	intron (NM_007496, intron 1 of 9)	6374.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-6779001-4	chr17	6778894	6779094	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009510, intron 1 of 12)	intron (NM_009510, intron 1 of 12)	3786.0	NM_009510	22350.0	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-78586987-3	chr9	78586862	78587062	+	865.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172773, intron 1 of 10)	intron (NM_172773, intron 1 of 10)	1083.0	NM_172773	235504.0	Mm.46932	NM_172773	ENSMUSG00000049624	Slc17a5	4631416G20Rik|4732491M05|AST|ISSD|NSD|SD|SIALIN|SIASD|SLD	solute carrier family 17 (anion/sugar transporter), member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128739547-5	chr2	128739489	128739689	+	821.286682	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 4 of 18)	intron (NM_008587, intron 4 of 18)	40674.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-121999790-4	chr5	121999685	121999885	+	862.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007804, intron 2 of 22)	intron (NM_007804, intron 2 of 22)	48040.0	NM_007804	13048.0	Mm.156172	NM_007804	ENSMUSG00000042589	Cux2	1700051K22Rik|Cutl2|Cux-2	cut-like homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-8629413-2	chr11	8629313	8629513	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 1 of 30)	intron (NM_001083587, intron 1 of 30)	35122.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-26594327-2	chr2	26594227	26594427	+	811.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_026212, intron 5 of 5)	B1_Mus1|SINE|Alu	-2907.0	NR_106155	102465787.0		NR_106155	ENSMUSG00000105799	Mir126b	mmu-mir-126b	microRNA 126b	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64376017-4	chr5	64375908	64376108	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR79|LTR|ERVL	91934.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106419692-4	chr11	106419617	106419817	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023913, intron 9 of 21)	intron (NM_023913, intron 9 of 21)	-36936.0	NM_010494	15896.0	Mm.394	NM_010494	ENSMUSG00000001029	Icam2	CD102|Icam-2|Ly-60	intercellular adhesion molecule 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-57390471-4	chr16	57390307	57390507	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	37130.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-160451634-4	chr2	160451555	160451755	+	909.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-84590.0	NM_010658	16658.0	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4082508-2	chr19	4082408	4082608	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001160253)	promoter-TSS (NM_001160253)	20.0	NM_001160253	29866.0	Mm.46268	NM_013878	ENSMUSG00000024857	Cabp2	-	calcium binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-106058069-2	chr8	106057969	106058169	+	975.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1534.0	NM_010901	18021.0	Mm.383185	NM_010901	ENSMUSG00000031902	Nfatc3	C80703|D8Ertd281e|NFAT4|NFATx	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-46999170-2	chr14	46999070	46999270	+	602.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037221, intron 2 of 12)	intron (NM_001037221, intron 2 of 12)	-2170.0	NM_001163433	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-101830685-4	chr2	101830547	101830747	+	786.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355625, intron 1 of 8)	intron (NM_001355625, intron 1 of 8)	8333.0	NM_001110849	72446.0	Mm.24138	NM_175181	ENSMUSG00000032841	Prr5l	2600010E01Rik|4833411O04Rik|Protor-2|Protor2	proline rich 5 like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-13163377-2	chr8	13163277	13163477	+	551.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010684, intron 1 of 8)	B3A|SINE|B2	4216.0	NM_010684	16783.0	Mm.16716	NM_010684	ENSMUSG00000031447	Lamp1	CD107a|LGP-120|LGP-A|Lamp-1|P2B|Perk	lysosomal-associated membrane protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-82843746-4	chr18	82843658	82843858	+	853.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28|LTR|ERVL	-12139.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128620780-2	chr2	128620680	128620880	+	718.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008569, intron 43 of 47)	intron (NM_008569, intron 43 of 47)	28439.0	NM_001310641	241634.0	Mm.297682	NM_001310641	ENSMUSG00000074812	Spdye4c	Gm355|SpeedyB3|SpyB3	speedy/RINGO cell cycle regulator family, member E4C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-61645649-3	chr2	61645547	61645747	+	777.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149323, intron 8 of 9)	intron (NR_149323, intron 8 of 9)	52550.0	NR_149323	21353.0	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-57417368-4	chr14	57417260	57417460	+	937.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2B1|LTR|ERVL	-6711.0	NM_009376	21821.0	Mm.4653	NM_009376	ENSMUSG00000040040	Ift88	AW552028|Tg737|Tg737Rpw|TgN737Rpw|Ttc10|flexo|fxo|orpk|polaris	intraflagellar transport 88	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-95415701-2	chr11	95415601	95415801	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359107, intron 1 of 9)	B1_Mur1|SINE|Alu	1618.0	NM_001359107	20747.0	Mm.285454	NM_025287	ENSMUSG00000057522	Spop	AI315626|Pcif1|TEF2	speckle-type POZ protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-116011876-4	chr5	116011778	116011978	+	960.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12550.0	NM_031869	19079.0	Mm.458152	NM_031869	ENSMUSG00000029513	Prkab1	1300015D22Rik|AU021155|E430008F22	protein kinase, AMP-activated, beta 1 non-catalytic subunit	protein-coding	0.678446920510705	1.04589799917598	0.425295399572777	0.584700725579146	1.06682432166906	0.434362965974635	0.607972266453413	0.729553914608176	0.17027043343913	0.916984121616496	1
Merged-chr16-13286671-4	chr16	13286559	13286759	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122667, intron 2 of 16)	RMER19A|LTR|ERVK	21580.0	NM_181860	239719.0	Mm.270643	NM_153588	ENSMUSG00000009569	Mkl2	Gt4-1|MRTF-B|Mrtfb|mKIAA1243	MKL/myocardin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-90256485-2	chr3	90256385	90256585	+	724.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357152, intron 1 of 9)	intron (NM_001357152, intron 1 of 9)	2627.0	NM_001357152	74343.0	Mm.35627	NM_028881	ENSMUSG00000027936	Crtc2	4632407F12Rik|Torc2	CREB regulated transcription coactivator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-46904036-4	chr17	46903942	46904142	+	993.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6443.0	NM_008938	19133.0	Mm.291370	NM_008938	ENSMUSG00000023978	Prph2	AOFMD|AVMD|Nmf193|PRPH|RP7|Rd-2|Rd2|Rds|Tspan22|rds	peripherin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-103763162-4	chr5	103763069	103763269	+	891.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080798, intron 1 of 19)	intron (NM_001080798, intron 1 of 19)	8596.0	NM_001080798	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-20003089-3	chr3	20003025	20003225	+	807.277771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080634, intron 15 of 16)	intron (NM_080634, intron 15 of 16)	32185.0	NM_001146324	12807.0	Mm.291533	NM_080634	ENSMUSG00000027615	Hps3	coa	HPS3, biogenesis of lysosomal organelles complex 2 subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80169256-2	chr10	80169156	80169356	+	783.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_152857, intron 1 of 7)	B1_Mur3|SINE|Alu	1417.0	NR_152857	12696.0	Mm.17898	NM_007705	ENSMUSG00000045193	Cirbp	Cirp|R74941	cold inducible RNA binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-122532527-2	chr14	122532427	122532627	+	562.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_153443, intron 1 of 24)	intron (NR_153443, intron 1 of 24)	-1801.0	NM_144844	110821.0	Mm.23876	NM_144844	ENSMUSG00000041650	Pcca	C79630	propionyl-Coenzyme A carboxylase, alpha polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-114843051-4	chr6	114842939	114843139	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253718, intron 19 of 19)	intron (NM_001253718, intron 19 of 19)	78782.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-8869881-2	chr13	8869781	8869981	+	675.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039388, intron 1 of 13)	intron (NM_001039388, intron 1 of 13)	1163.0	NM_001039389	207615.0	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-141055680-2	chr5	141055580	141055780	+	717.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55084.0	NM_175362	108723.0	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-59042846-4	chr2	59042754	59042954	+	921.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362394, intron 1 of 13)	intron (NM_001362394, intron 1 of 13)	117829.0	NM_001362393	227933.0	Mm.330234	NM_177650	ENSMUSG00000036641	Ccdc148	5830402J09|Gm38473	coiled-coil domain containing 148	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139838628-3	chr5	139838542	139838742	+	791.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11748.0	NM_025604	66506.0	Mm.29070	NM_025604	ENSMUSG00000029551	Psmg3	1810042K04Rik|4930403H09Rik|AI303239	proteasome (prosome, macropain) assembly chaperone 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-93576140-3	chr10	93576061	93576261	+	872.822205	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175488, intron 13 of 15)	intron (NM_175488, intron 13 of 15)	-13252.0	NR_045810	74454.0	Mm.410794	NR_045810	ENSMUSG00000097407	4933408J17Rik	-	RIKEN cDNA 4933408J17 gene	ncRNA	0.795864073738137	0.465167971841058	0.459090860873981	1.18255061950078	0.447907324909802	0.466544532885759	0.893837980233848	0.959535835790734	-0.356291008457073	0.844827960553577	1
Merged-chr4-133650188-4	chr4	133650083	133650283	+	908.3916630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR50|LTR|ERVL	-16754.0	NM_001017968	503610.0	Mm.331948	NM_001017968	ENSMUSG00000037553	Zdhhc18	-	zinc finger, DHHC domain containing 18	protein-coding	2.17263132906675	1.92851691675158	1.24941923249606	2.62261181090375	2.09469398766608	2.56369731550483	1.50395865713218	1.96475758763239	-0.018307719216368	0.985466586195441	0.998431161219273
Merged-chr1-180851749-2	chr1	180851649	180851849	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145943, intron 1 of 6)	intron (NM_145943, intron 1 of 6)	598.0	NM_145943	208768.0	Mm.272625	NM_145943	ENSMUSG00000038806	Sde2	-	SDE2 telomere maintenance homolog (S. pombe)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-57355637-4	chr19	57355558	57355758	+	907.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040316, intron 1 of 2)	intron (NR_040316, intron 1 of 2)	5241.0	NR_040316	320879.0	Mm.375089	NR_040316	ENSMUSG00000097785	B230217O12Rik	-	RIKEN cDNA B230217O12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-91254329-4	chr15	91254239	91254439	+	866.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62332.0	NM_001358967	26874.0	Mm.295456	NM_011994	ENSMUSG00000055782	Abcd2	ABC39|ALDL1|ALDR|ALDRP	ATP-binding cassette, sub-family D (ALD), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90504945-4	chr2	90504848	90505048	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	-25774.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-111237478-4	chr8	111237382	111237582	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009149, intron 1 of 25)	intron (NM_009149, intron 1 of 25)	21720.0	NM_009149	20340.0	Mm.276271	NM_009149	ENSMUSG00000003316	Glg1	AI593353|AW537898|CFR|CFR-1|ESL-1|MG-160|MG160|Selel	golgi apparatus protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-77936118-2	chr10	77936018	77936218	+	771.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_138301, intron 13 of 33)	intron (NM_138301, intron 13 of 33)	-33582.0	NM_145152	237387.0	Mm.133301	NM_145152	ENSMUSG00000051652	Lrrc3	1300011L04Rik|C21orf102	leucine rich repeat containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-38192483-2	chr18	38192383	38192583	+	974.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17279.0	NM_029357	75599.0	Mm.36560	NM_029357	ENSMUSG00000051375	Pcdh1	2010005A06Rik|AI585920	protocadherin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100685868-4	chr7	100685774	100685974	+	826.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20761.0	NM_001362169	319604.0	Mm.260362	NM_178764	ENSMUSG00000029461	Fam168a	2610030B18Rik|B930006L02Rik|mKIAA0280	family with sequence similarity 168, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-6440961-2	chr15	6440861	6441061	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_023118)	TTS (NM_023118)	-4372.0	NM_013485	12279.0	Mm.29095	NM_013485	ENSMUSG00000022149	C9	-	complement component 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-72586223-1	chr8	72586123	72586323	+	1000.0	f1_c57bl6.idr	non-coding (NR_151663, exon 3 of 3)	non-coding (NR_151663, exon 3 of 3)	14400.0	NM_001357279	74166.0	Mm.212927	NM_144534	ENSMUSG00000031791	Tmem38a	1110001E17Rik|AI413399|SPR-27|TRIC-A|mg33a	transmembrane protein 38A	protein-coding	-1.06344364775841	-1.04368536008904	-1.05499708726637	-1.06019777241716	-0.684687852939284	-0.695980942785732	-1.05243636017942	-1.05985544598439	2.75452886125285	0.384336371218222	1
Merged-chr17-8233946-3	chr17	8233851	8234051	+	664.027771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2092.0	NM_001190333	12458.0	Mm.8007	NM_009835	ENSMUSG00000040899	Ccr6	CC-CKR-6|CCR-6|Cmkbr6|KY411	chemokine (C-C motif) receptor 6	protein-coding	0.175537742942348	0.813606388673545	0.368049646424688	0.183757699272103	0.452988718442284	0.824927437969595	0.190108546266921	0.353575292617584	0.39492014243615	0.833297499946267	1
Merged-chr16-44765777-4	chr16	44765692	44765892	+	949.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021325)	promoter-TSS (NM_021325)	56.0	NM_021325	57781.0	Mm.416152	NM_021325	ENSMUSG00000022667	Cd200r1	CD200R|Mox2r|OX2R	CD200 receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-105789989-4	chr3	105789880	105790080	+	965.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145541, intron 1 of 7)	MTD|LTR|ERVL-MaLR	11401.0	NM_145541	109905.0	Mm.101922	NM_145541	ENSMUSG00000068798	Rap1a	AI848598|G-22K|Krev-1|Rap1	RAS-related protein 1a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-11851125-1	chr19	11851025	11851225	+	651.5	f0_balb.idr	Intergenic	Intergenic	4826.0	NM_001011524	258227.0	Mm.377385	NM_001011524	ENSMUSG00000060556	Olfr1418	MOR266-5	olfactory receptor 1418	protein-coding	0.895541193132873	1.00742245567755	0.972944695613352	0.944984262822369	2.16801903867326	2.66891098196429	2.99232919675936	2.39215592890687	5.94334328755483	4.35056914528153e-06	0.000225640325382224
Merged-chr9-95691555-2	chr9	95691455	95691655	+	545.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029620, intron 6 of 8)	MTC|LTR|ERVL-MaLR	53927.0	NM_029620	76477.0	Mm.46016	NM_029620	ENSMUSG00000015354	Pcolce2	2400001O18Rik|Pcpe2	procollagen C-endopeptidase enhancer 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-7567531-4	chr9	7567434	7567634	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008611, exon 10 of 10)	exon (NM_008611, exon 10 of 10)	-3862.0	NM_001310717	234911.0	Mm.334940	NM_001030289	ENSMUSG00000070323	Mmp27	Gm180	matrix metallopeptidase 27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101323130-2	chr11	101323030	101323230	+	756.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011192, exon 11 of 11)	3' UTR (NM_011192, exon 11 of 11)	-1933.0	NM_178932	237940.0	Mm.302277	NM_178932	ENSMUSG00000078651	Aoc2	RAO	amine oxidase, copper containing 2 (retina-specific)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-120151806-4	chr10	120151697	120151897	+	848.9833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359184, intron 8 of 11)	intron (NM_001359184, intron 8 of 11)	-38832.0	NM_080446	117599.0	Mm.214703	NM_080446	ENSMUSG00000020228	Helb	AI447783|D10Ertd664e	helicase (DNA) B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-73037885-4	chr2	73037782	73037982	+	982.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57436.0	NM_001018042	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-80290329-1	chr11	80290229	80290429	+	547.0	f1_balb.idr	Intergenic	Intergenic	-10583.0	NM_139228	246104.0	Mm.194148	NM_139228	ENSMUSG00000017692	Rhbdl3	AI847581|Rhbdl4|Rhomr1|Vrho	rhomboid like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-43481295-7	chr13	43481177	43481377	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019930)	promoter-TSS (NM_019930)	-304.0	NM_019930	56705.0	Mm.148781	NM_019930	ENSMUSG00000038546	Ranbp9	IBAP-1|Ibap1|RanBPM	RAN binding protein 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-42297998-2	chr6	42297898	42298098	+	765.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013491, intron 7 of 22)	intron (NM_013491, intron 7 of 22)	11313.0	NM_013491	12723.0	Mm.386757	NM_013491	ENSMUSG00000029862	Clcn1	Clc-1|Clc1|SMCC1|adr|mto|myotonia|nmf355	chloride channel, voltage-sensitive 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25292771-2	chr7	25292671	25292871	+	640.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_027882, exon 18 of 20)	exon (NM_027882, exon 18 of 20)	5184.0	NM_008776	18476.0	Mm.597	NM_008776	ENSMUSG00000005447	Pafah1b3	Pafahg|mus[g]	platelet-activating factor acetylhydrolase, isoform 1b, subunit 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-130818645-1	chr4	130818545	130818745	+	544.0	f1_c57bl6.idr	exon (NM_011520, exon 3 of 5)	exon (NM_011520, exon 3 of 5)	26108.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-86188145-2	chr15	86188045	86188245	+	889.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_155352)	TTS (NR_155352)	-2004.0	NM_145475	223753.0	Mm.222685	NM_145475	ENSMUSG00000035891	Cerk	AI848610|D330016D08Rik|mKIAA1646	ceramide kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-25044298-4	chr8	25044190	25044390	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031257, intron 10 of 11)	intron (NM_031257, intron 10 of 11)	-5328.0	NM_001081187	330723.0	Mm.334452	NM_001081187	ENSMUSG00000037406	Htra4	B430206E18Rik	HtrA serine peptidase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-16892094-4	chr6	16892013	16892213	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031198, intron 1 of 6)	intron (NM_031198, intron 1 of 6)	6328.0	NM_031198	21426.0	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-20561451-3	chr11	20561341	20561541	+	855.2666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021372, intron 1 of 1)	intron (NM_021372, intron 1 of 1)	18188.0	NM_021372	58172.0	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-50939581-2	chr2	50939481	50939681	+	626.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29897.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-62922355-3	chr18	62922243	62922443	+	746.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133237)	promoter-TSS (NM_133237)	16.0	NM_133237	494504.0	Mm.391102	NM_133237	ENSMUSG00000071847	Apcdd1	AB023957|AU041258|Drapc1|EIG180	adenomatosis polyposis coli down-regulated 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-37579257-3	chr16	37579164	37579364	+	860.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013547)	promoter-TSS (NM_013547)	-889.0	NR_027778	15233.0	Mm.157442	NM_013547	ENSMUSG00000022821	Hgd	Hgo|aku	homogentisate 1, 2-dioxygenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120801536-2	chr11	120801436	120801636	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR17B_Mm|LTR|ERVK	-5141.0	NM_026824	68730.0	Mm.180622	NM_026824	ENSMUSG00000025155	Dus1l	1110032N12Rik	dihydrouridine synthase 1-like (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-23116432-4	chr19	23116326	23116526	+	713.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-24800.0	NM_010638	16601.0	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|Gm9971	Kruppel-like factor 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-122294106-4	chr3	122294030	122294230	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_030439)	promoter-TSS (NR_030439)	-427.0	NR_030439	791077.0		NR_030439	ENSMUSG00000076456	Mir760	Mirn760|mir-760|mmu-mir-760	microRNA 760	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30362149-2	chr7	30362049	30362249	+	833.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_175478, exon 1 of 3)	5' UTR (NM_175478, exon 1 of 3)	623.0	NM_175478	233067.0	Mm.23157	NM_175478	ENSMUSG00000036957	Lrfn3	A530045B06Rik|SALM4	leucine rich repeat and fibronectin type III domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-53783808-3	chr19	53783695	53783895	+	777.25	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170847, intron 1 of 13)	Lx9|LINE|L1	106489.0	NM_001170847	73713.0	Mm.313695	NM_001170847	ENSMUSG00000043639	Rbm20	1110018J23Rik|2010003H22Rik|AI646761	RNA binding motif protein 20	protein-coding	1.50786823274233	1.52029893586563	1.47661047895515	1.80794163179317	1.51875813241858	1.52999897537578	1.87457800633886	1.81714322815671	0.378120770377433	0.719953022456728	0.998431161219273
Merged-chr4-63372127-4	chr4	63372013	63372213	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045514, intron 18 of 21)	intron (NM_001045514, intron 18 of 21)	9664.0	NM_011016	18406.0	Mm.14173	NM_011016	ENSMUSG00000061540	Orm2	Agp1|Orm-2	orosomucoid 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-13154327-2	chr16	13154227	13154427	+	561.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	44591.0	NM_015769	50505.0	Mm.287837	NM_015769	ENSMUSG00000022545	Ercc4	AI606920|Xpf	excision repair cross-complementing rodent repair deficiency, complementation group 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19155465-2	chr7	19155365	19155565	+	656.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5627.0	NM_026943	107686.0	Mm.29135	NM_026943	ENSMUSG00000040824	Snrpd2	1810009A06Rik|SMD2	small nuclear ribonucleoprotein D2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-76695182-2	chr11	76695082	76695282	+	614.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177709, intron 2 of 2)	intron (NM_177709, intron 2 of 2)	15309.0	NM_177709	237858.0	Mm.127006	NM_177709	ENSMUSG00000046275	Tusc5	C130069F04Rik|DSPB1|Lost1	tumor suppressor candidate 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115529299-2	chr5	115529199	115529399	+	752.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_011223, intron 1 of 10)	intron (NM_011223, intron 1 of 10)	22623.0	NM_133915	19303.0	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-142934669-2	chr5	142934569	142934769	+	812.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25686.0	NM_007984	14086.0	Mm.289707	NM_007984	ENSMUSG00000029581	Fscn1	AI663989|Fan1|fascin-1	fascin actin-bundling protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-116124046-1	chr3	116123946	116124146	+	619.0	f0_balb.idr	intron (NM_011693, intron 4 of 8)	intron (NM_011693, intron 4 of 8)	5642.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83271681-4	chr11	83271592	83271792	+	973.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15034.0	NM_001166028	237890.0	Mm.297670	NM_001166028	ENSMUSG00000082101	Slfn14	Gm20|Slfn14-ps	schlafen 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46109750-1	chr8	46109650	46109850	+	544.0	f1_balb.idr	intron (NM_207213, intron 2 of 17)	intron (NM_207213, intron 2 of 17)	14396.0	NM_207213	102141.0	Mm.267258	NM_207213	ENSMUSG00000038291	Snx25	AI661919|Gm1699|Gm173|Sbbi31	sorting nexin 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-13502829-2	chr8	13502729	13502929	+	680.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8294.0	NM_019521	14456.0	Mm.3982	NM_019521	ENSMUSG00000031451	Gas6	Gas-6	growth arrest specific 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-6537286-2	chr2	6537186	6537386	+	543.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	184376.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-60748615-3	chr13	60748545	60748745	+	826.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 20 of 26)	intron (NM_134062, intron 20 of 26)	37719.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-181695148-2	chr2	181695048	181695248	+	617.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1171.0	NM_001291209	56470.0	Mm.274366	NM_026446	ENSMUSG00000002458	Rgs19	2610042F04Rik|AI324841|AW547781|GAIP	regulator of G-protein signaling 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-80139806-2	chr17	80139706	80139906	+	635.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_176963, intron 2 of 6)	B3A|SINE|B2	12335.0	NM_176963	319625.0	Mm.29098	NM_176963	ENSMUSG00000035473	Galm	A530057M15Rik|AU015645|AU020959	galactose mutarotase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-73487764-3	chr15	73487665	73487865	+	862.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24795.0	NR_152151	105841.0	Mm.322557	NM_001081066	ENSMUSG00000036661	Dennd3	AI447457|E030003N15Rik	DENN/MADD domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-136169980-2	chr1	136169880	136170080	+	616.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039472, intron 29 of 34)	intron (NM_001039472, intron 29 of 34)	38590.0	NR_153829	16565.0	Mm.276135	NM_019962	ENSMUSG00000041642	Kif21b	2610511N21Rik|mKIAA0449	kinesin family member 21B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-46710224-3	chr12	46710135	46710335	+	948.788879	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021361, intron 4 of 4)	L2a|LINE|L2	108540.0	NM_021361	664883.0	Mm.247195	NM_021361	ENSMUSG00000021047	Nova1	9430099M15Rik|G630039L02|Nova-1	neuro-oncological ventral antigen 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-45247826-4	chr9	45247733	45247933	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198971, intron 4 of 4)	intron (NM_001198971, intron 4 of 4)	18874.0	NR_106054	102466803.0		NR_106054	ENSMUSG00000098361	Mir7086	Gm27643|mmu-mir-7086	microRNA 7086	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-44768022-2	chr13	44767922	44768122	+	964.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205043, intron 1 of 17)	B4A|SINE|B4	36751.0	NM_001205043	16468.0	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28621893-4	chr17	28621790	28621990	+	804.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016795, intron 2 of 15)	CpG	631.0	NM_016795	20815.0	Mm.15252	NM_016795	ENSMUSG00000004865	Srpk1	AU017960	serine/arginine-rich protein specific kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-21175800-4	chr19	21175712	21175912	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	71102.0	NR_126458	75354.0	Mm.243873	NR_126458		4930554I06Rik	-	RIKEN cDNA 4930554I06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-61915174-2	chr9	61915074	61915274	+	950.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018853)	promoter-TSS (NM_018853)	-664.0	NM_018853	56040.0	Mm.3158	NM_018853	ENSMUSG00000007892	Rplp1	2410042H16Rik|Arpp1|C430017H15Rik	ribosomal protein, large, P1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-88707314-4	chr4	88707218	88707418	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15190.0	NM_172871	242521.0	Mm.260601	NM_172871	ENSMUSG00000070923	Klhl9	8030469P05|C530050O22Rik|mKIAA1354	kelch-like 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-110622053-3	chr8	110621947	110622147	+	712.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151675, intron 1 of 17)	ORR1E|LTR|ERVL-MaLR	3480.0	NR_151675	234729.0	Mm.274894	NM_146216	ENSMUSG00000010936	Vac14	AA959718|BC032215|D8Wsu151e|Tax1bp2|Trx|ingls	Vac14 homolog (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-172047152-4	chr1	172047128	172047328	+	806.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10368.0	NM_010916	18071.0	Mm.2474	NM_010916	ENSMUSG00000051251	Nhlh1	Hen1|Nscl|Tal2|bHLHa35	nescient helix loop helix 1	protein-coding	1.00004071828807	2.75018705324507	2.64994438284254	1.04598666293778	2.00512778217344	1.11145896309599	2.50545954763818	1.70733296816433	-0.467650047496818	0.696964473935633	0.997929106458421
Merged-chr11-70253824-2	chr11	70253724	70253924	+	714.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007440, intron 2 of 13)	intron (NM_007440, intron 2 of 13)	1546.0	NM_001331118	11684.0	Mm.12286	NM_007440	ENSMUSG00000000320	Alox12	9930022G08Rik|Alox12p|P-12LO	arachidonate 12-lipoxygenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-32620167-4	chr11	32620067	32620267	+	936.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 18 of 18)	intron (NM_009288, intron 18 of 18)	-22388.0	NM_001271348	103583.0	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-32641470-2	chr12	32641370	32641570	+	777.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14-int|LTR|ERV1	-178865.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	-0.499940950918087	-0.487518524828365	0.0891561271406926	-0.494726023626598	-0.499164980458282	-0.486601867615524	0.100277611126392	-0.494177430718284	0.0410194320726077	0.98816738256539	1
Merged-chr5-23386710-1	chr5	23386610	23386810	+	797.0	f1_balb.idr	Intergenic	Intergenic	47643.0	NR_040469	269630.0	Mm.425231	NR_040469	ENSMUSG00000073147	5031425E22Rik	-	RIKEN cDNA 5031425E22 gene	ncRNA	0.870117926374452	1.26015550437965	0.670715995933015	0.46952487313068	0.621485274251993	1.27352926854974	0.676444465243547	0.470796449473048	-0.24629395171826	0.877103497236259	1
Merged-chr3-108537483-4	chr3	108537387	108537587	+	983.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029314)	promoter-TSS (NM_029314)	-97.0	NM_029314	75504.0	Mm.271255	NM_029314	ENSMUSG00000027886	1700013F07Rik	-	RIKEN cDNA 1700013F07 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-31931887-4	chr9	31931778	31931978	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-18593.0	NM_013800	12023.0	Mm.261044	NM_013800	ENSMUSG00000032033	Barx2	2310006E12Rik|Barx2b	BarH-like homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-7924433-4	chr10	7924320	7924520	+	812.983337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359534, intron 2 of 6)	intron (NM_001359534, intron 2 of 6)	28645.0	NM_001359534	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-78208753-2	chr16	78208653	78208853	+	648.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2B|LTR|ERVL	46701.0	NR_045698	100503619.0	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-35183545-4	chr9	35183474	35183674	+	978.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001177847)	TTS (NM_001177847)	-7587.0	NM_027030	69305.0	Mm.229110	NM_027030	ENSMUSG00000032040	Dcps	1700001E16Rik|AA408441	decapping enzyme, scavenger	protein-coding	3.06314621398506	3.51947041265718	2.67762939869213	3.05344252949994	2.91771819291543	3.62207468716299	1.94317774448776	3.91843586695073	0.314299142989375	0.648709861595009	0.985300985663378
Merged-chr11-118404658-4	chr11	118404568	118404768	+	868.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2709.0	NM_011150	19039.0	Mm.3152	NM_011150	ENSMUSG00000033880	Lgals3bp	90K|CyCAP|MAC-2BP|Ppicap|Tango10b	lectin, galactoside-binding, soluble, 3 binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-84784704-4	chr12	84784594	84784794	+	930.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013589, intron 34 of 34)	intron (NM_013589, intron 34 of 34)	11424.0	NM_028863	74316.0	Mm.25719	NM_028863	ENSMUSG00000021241	Isca2	0710001C05Rik|5730594E03Rik|Hbld1	iron-sulfur cluster assembly 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-118295629-3	chr2	118295494	118295694	+	744.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201367, intron 1 of 2)	intron (NM_201367, intron 1 of 2)	-9320.0	NR_045919	73358.0	Mm.437192	NR_045919	ENSMUSG00000085889	1700054M17Rik	-	RIKEN cDNA 1700054M17 gene	ncRNA	1.40758483872342	1.05853607078651	0.720608547853404	0.975904708364937	0.806371707064478	0.544119459840592	0.726196611767145	0.527296918028766	-2.37276798285983	0.136897532657234	1
Merged-chr11-58307737-4	chr11	58307600	58307800	+	953.724976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_182996, exon 2 of 12)	exon (NM_182996, exon 2 of 12)	631.0	NM_001040686	103836.0	Mm.41440	NM_182996	ENSMUSG00000037243	Zfp692	AI746306|AI839920|Zfp692-ps|Znf692	zinc finger protein 692	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-34778390-4	chr4	34778310	34778510	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001330756)	promoter-TSS (NM_001330756)	-44.0	NM_025471	66291.0	Mm.28071	NM_025471	ENSMUSG00000028295	Smim8	1810030N24Rik|2810406B13Rik	small integral membrane protein 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-53921169-4	chr18	53921076	53921276	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152809, intron 6 of 12)	intron (NM_152809, intron 6 of 12)	59063.0	NM_152809	70425.0	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	3.97149607398472	3.60325379175333	4.17600460206127	4.16849721953538	3.6116166717892	3.18015347848899	4.15143523153998	3.39920169512375	-0.518515668488618	0.292051906568416	0.796251804652596
Merged-chr17-27909785-3	chr17	27909668	27909868	+	872.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr	promoter-TSS (NM_026836)	promoter-TSS (NM_026836)	462.0	NM_181413	224650.0	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	0.378472665286772	0.417099992801074	0.404742574835697	0.606564631080024	1.79923113861384	0.419848748220879	0.98272092960144	1.06759839550299	4.03083216800315	0.0209976394464035	0.185424198781612
Merged-chr2-102990902-4	chr2	102990805	102991005	+	995.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	82608.0	NM_175094	27402.0	Mm.315011	NM_175094	ENSMUSG00000010914	Pdhx	AI481367|E3bp|Pdx1	pyruvate dehydrogenase complex, component X	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-30968626-4	chr16	30968550	30968750	+	976.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198626, intron 3 of 3)	intron (NM_198626, intron 3 of 3)	112782.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	5.21022132037712	5.00646375402674	5.2143522841062	4.92847389901823	6.60761789618716	6.25793927021486	6.73997930393389	6.74975054858591	1.6654893886344	5.49078501437012e-12	1.52027166005568e-09
Merged-chr4-44981448-4	chr4	44981353	44981553	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001312880)	promoter-TSS (NM_001312880)	59.0	NM_001312880	76238.0	Mm.196574	NM_080289	ENSMUSG00000035637	Grhpr	1110059D05Rik|6430629L09Rik|Glxr	glyoxylate reductase/hydroxypyruvate reductase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-38004628-2	chr18	38004528	38004728	+	753.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5659.0	NM_001205336	106952.0	Mm.247642	NM_139206	ENSMUSG00000024451	Arap3	Centd3|Drag1|E030006K04Rik|cnt-d3	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-50208270-3	chr11	50208161	50208361	+	822.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290769, intron 1 of 7)	intron (NM_001290769, intron 1 of 7)	2559.0	NM_001290769	18412.0	Mm.40828	NM_011018	ENSMUSG00000015837	Sqstm1	A170|OSF-6|Osi|STAP|STONE14|p62	sequestosome 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-42051684-4	chr13	42051544	42051744	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007772)	promoter-TSS (NM_007772)	-377.0	NM_007772	110521.0	Mm.4808	NM_007772	ENSMUSG00000021366	Hivep1	Cryabp1	human immunodeficiency virus type I enhancer binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-64633268-3	chr1	64633204	64633404	+	907.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16136.0	NM_025964	67099.0	Mm.46394	NM_025964	ENSMUSG00000025956	Mettl21a	2310038H17Rik|AI464204|Fam119a	methyltransferase like 21A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-101907903-4	chr13	101907783	101907983	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-139666.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-60954801-4	chr8	60954711	60954911	+	982.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173876)	promoter-TSS (NM_173876)	-12.0	NM_173876	12725.0	Mm.25263	NM_007711	ENSMUSG00000004319	Clcn3	Clc3	chloride channel, voltage-sensitive 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-38534049-1	chr2	38533949	38534149	+	893.0	f0_balb.idr	intron (NM_001159631, intron 1 of 9)	intron (NM_001159631, intron 1 of 9)	22173.0	NM_001159631	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-34680980-2	chr12	34680880	34681080	+	891.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271386, intron 3 of 27)	intron (NM_001271386, intron 3 of 27)	-152091.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-3387387-4	chr5	3387293	3387493	+	938.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 2 of 7)	intron (NM_009873, intron 2 of 7)	43500.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-150599682-4	chr5	150599587	150599787	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001362416)	TTS (NM_001362416)	-5162.0	NM_133898	100637.0	Mm.279932	NM_133898	ENSMUSG00000041132	N4bp2l1	2410024N18Rik|AI428195|B230342M21Rik	NEDD4 binding protein 2-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-9921111-2	chr19	9921067	9921267	+	697.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21634.0	NM_016692	16319.0	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	-0.893986561169655	-0.875744574464236	0.191235023404903	-0.88803707909448	-0.893095256885496	-0.872421296127899	-0.88349549973802	-0.887416687878218	-3.49744126941707	0.244297073838425	1
Merged-chr13-73609015-2	chr13	73608915	73609115	+	715.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_146047, intron 5 of 16)	intron (NM_146047, intron 5 of 16)	5013.0	NM_146047	218335.0	Mm.30099	NM_146047	ENSMUSG00000021610	Clptm1l	C130052I12Rik|Crr9	CLPTM1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-113026261-3	chr9	113026166	113026366	+	875.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	560886.0	NR_040760	102688.0	Mm.394901	NR_040760	ENSMUSG00000109890	AU023762	-	expressed sequence AU023762	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-122602404-4	chr6	122602298	122602498	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031159)	promoter-TSS (NM_031159)	46.0	NM_031159	11810.0	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	4.9225587471242	3.96327039888911	4.25629480375652	4.63817221943031	4.74676229436109	3.90416867355725	4.74976853112621	5.01968817160764	0.207489541099404	0.609680482572886	0.974992433107985
Merged-chr10-60274077-4	chr10	60273980	60274180	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3548.0	NM_001146123	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-39636216-3	chr8	39636122	39636322	+	996.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113326, intron 1 of 9)	intron (NM_001113326, intron 1 of 9)	6456.0	NM_031195	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-77265997-3	chr2	77265908	77266108	+	596.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175465, intron 1 of 17)	intron (NM_175465, intron 1 of 17)	14584.0	NM_175465	228071.0	Mm.27120	NM_175465	ENSMUSG00000042272	Sestd1	1500031J16Rik|A930010O20|Solo/Trio8	SEC14 and spectrin domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-25301180-4	chr12	25301083	25301283	+	985.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	172009.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	3.65810314192663	4.2027877000769	3.89182711088998	4.16649094843369	4.17162629356856	3.12494200793231	2.71895080420415	3.0370671057486	-0.847621983348327	0.124826332457311	0.553113157211875
Merged-chr9-44402519-2	chr9	44402419	44402619	+	707.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008063, exon 8 of 8)	3' UTR (NM_008063, exon 8 of 8)	2096.0	NR_106053	102465658.0		NR_106053	ENSMUSG00000099309	Mir7085	Gm27423|mmu-mir-7085	microRNA 7085	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-25207982-4	chr12	25207869	25208069	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	78795.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	2.5597160925391	2.717930630129	3.11977703242852	1.44123023861348	1.74718816370557	2.14242271378851	1.21927867068055	1.66197648376778	-2.01872523272608	0.0393533467328471	0.282061567416037
Merged-chr3-67558486-2	chr3	67558386	67558586	+	594.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-24282.0	NM_025813	66868.0	Mm.491153	NM_025813	ENSMUSG00000027775	Mfsd1	1200003O06Rik	major facilitator superfamily domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133659658-4	chr4	133659596	133659796	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12951.0	NM_001145955	230801.0	Mm.217004	NM_178698	ENSMUSG00000043257	Pigv	B330013B03|D430024F16Rik	phosphatidylinositol glycan anchor biosynthesis, class V	protein-coding	5.17259420696991	4.46305596804556	6.32703696881276	5.43904134902157	5.45524053968765	4.68464538618786	6.34896052934287	5.32325087498245	0.0807195437628673	0.840983571294305	0.998431161219273
Merged-chr14-56833440-2	chr14	56833340	56833540	+	724.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR44C|LTR|ERVK	21451.0	NR_152252	100503842.0	Mm.297636	NR_152252	ENSMUSG00000100017	2410022M11Rik	-	RIKEN cDNA 2410022M11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95646256-2	chr3	95646156	95646356	+	823.599976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-12465.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83599100-4	chr6	83598984	83599184	+	944.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26580.0	NM_001362080	70527.0	Mm.32801	NM_024239	ENSMUSG00000006906	Stambp	5330424L14Rik|5730422L11Rik|AW107289|Amsh|mKIAA4198	STAM binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-81110922-3	chr3	81110815	81111015	+	638.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr	intron (NM_019971, intron 1 of 5)	intron (NM_019971, intron 1 of 5)	74499.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	3.55440565029775	3.64795083634719	4.1713775990949	4.06124455504529	3.35337576658365	4.39129762165387	3.95263117106428	4.37798287508845	0.265932808792068	0.578334958513	0.965985075107763
Merged-chr18-43393573-1	chr18	43393473	43393673	+	644.0	f0_balb.idr	promoter-TSS (NM_009468)	promoter-TSS (NM_009468)	-196.0	NM_009468	22240.0	Mm.8180	NM_009468	ENSMUSG00000024501	Dpysl3	CRMP-4|DRP-3|TUC4|ULIP-1|Ulip|Ulip1	dihydropyrimidinase-like 3	protein-coding	-1.5061220274826	-1.47360709383584	-1.48343987814663	-1.49151681994238	-1.50383953926072	-1.47147628845725	-1.0170701920923	-1.49007105122263	2.15652851593596	0.535359572134045	1
Merged-chr11-17454920-2	chr11	17454820	17455020	+	828.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	197232.0	NM_001330649	57316.0	Mm.287982	NM_020558	ENSMUSG00000000581	C1d	1110036E10Rik|AI875855|SUN-CoR	C1D nuclear receptor co-repressor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-59850404-3	chr4	59850319	59850519	+	843.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172468, intron 1 of 8)	intron (NM_172468, intron 1 of 8)	44769.0	NM_172468	209131.0	Mm.259705	NM_172468	ENSMUSG00000028385	Snx30	4732481H14Rik|C030041J06Rik	sorting nexin family member 30	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119376654-2	chr11	119376554	119376754	+	934.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_178743, intron 12 of 16)	intron (NM_178743, intron 12 of 16)	-13818.0	NR_035453	100316690.0		NR_035453	ENSMUSG00000088015	Mir1932	mir-1932|mmu-mir-1932	microRNA 1932	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122616413-1	chr8	122616313	122616513	+	772.0	f1_balb.idr	TTS (NM_021502)	TTS (NM_021502)	4787.0	NM_021502	59005.0	Mm.38746	NM_021502	ENSMUSG00000015013	Trappc2l	1810017G16Rik|AB030200|Hspc176|Tca17	trafficking protein particle complex 2-like	protein-coding	0.588977852879293	0.631278698525686	0.836684350689038	0.982858933300152	1.82055733909395	1.50020252333345	1.18132888140961	0.608955952551642	2.70022327279456	0.0834597350052067	0.442508228832652
Merged-chr11-107446847-3	chr11	107446760	107446960	+	638.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 1 of 9)	intron (NR_153311, intron 1 of 9)	23860.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	1.02626650344568	1.48153543613834	1.14642068699926	0.537287593233763	0.51929955897998	1.98643799621042	0.553134673958545	0.539468592268633	0.0723113555329741	0.96441031799456	0.998431161219273
Merged-chr6-26206222-4	chr6	26206103	26206303	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	274777.0	NR_040771	626904.0	Mm.126787	NR_040771	ENSMUSG00000106799	Gm20756	-	predicted gene, 20756	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-126430480-4	chr4	126430374	126430574	+	960.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153402)	promoter-TSS (NM_153402)	-932.0	NM_153402	214150.0	Mm.440915	NM_153402	ENSMUSG00000028842	Ago3	AW048688|C130014L07Rik|Eif2c3	argonaute RISC catalytic subunit 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-115900925-2	chr4	115900825	115901025	+	655.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10259.0	NM_001357060	76237.0	Mm.101606	NM_001357060	ENSMUSG00000034185	6430628N08Rik	-	RIKEN cDNA 6430628N08 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-142960351-3	chr5	142960260	142960460	+	660.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007984)	promoter-TSS (NM_007984)	5.0	NM_007984	14086.0	Mm.289707	NM_007984	ENSMUSG00000029581	Fscn1	AI663989|Fan1|fascin-1	fascin actin-bundling protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-133554931-3	chr2	133554827	133555027	+	996.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007553, intron 2 of 2)	intron (NM_007553, intron 2 of 2)	2768.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-127992337-2	chr6	127992237	127992437	+	702.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356301, intron 2 of 7)	intron (NM_001356301, intron 2 of 7)	104715.0	NM_026743	68498.0	Mm.174368	NM_026743	ENSMUSG00000030351	Tspan11	1110014F12Rik|AU067806	tetraspanin 11	protein-coding	-1.50561175621786	-1.47331375025452	-1.02203377115094	-1.49110398925286	-1.50334449591826	-1.47119716082604	-1.48086985756939	-1.48966786617048	-2.07776723614574	0.550394407909386	1
Merged-chr11-63924268-3	chr11	63924166	63924366	+	735.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1982.0	NM_018805	54710.0	Mm.274426	NM_018805	ENSMUSG00000070407	Hs3st3b1	3-OST-3B|3OST3B1|3Ost3b|AU041882|AW536289|Hs3st3b|m3-OST-3B	heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120368529-2	chr11	120368429	120368629	+	570.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_172802)	TTS (NM_172802)	6995.0	NM_172802	238021.0	Mm.481403	NM_172802	ENSMUSG00000025380	Fscn2	A930022G03|Ahl8|C630046B20Rik	fascin actin-bundling protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107600148-3	chr9	107600098	107600298	+	717.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001042779, intron 16 of 19)	intron (NM_001042779, intron 16 of 19)	5204.0	NM_009153	20347.0	Mm.4083	NM_009153	ENSMUSG00000057969	Sema3b	SemA|Semaa|sema5|semaV	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B	protein-coding	-0.561510084829117	0.0715265931161323	-0.55369692359288	-0.556634846399156	-0.0736449462341145	-0.549028893481784	-0.552856899374535	-0.55612166115538	-0.483665136239471	0.863802347692736	1
Merged-chr12-25142480-4	chr12	25142384	25142584	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13310.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	4.2570562446448	4.085824487118	3.94683759300903	4.27427846520579	5.17628807647066	5.09935240215594	3.02935516098631	4.98627645891203	0.822128114895536	0.0812600906661161	0.435621007578746
Merged-chr18-60210767-4	chr18	60210686	60210886	+	980.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-1291.0	NM_001033767	240327.0	Mm.357104	NM_001033767	ENSMUSG00000073555	Gm4951	EG240327|Ifgga2	predicted gene 4951	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33886803-4	chr16	33886698	33886898	+	922.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 5 of 14)	intron (NM_001145884, intron 5 of 14)	57133.0	NM_001145884	16419.0	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-46919929-4	chr7	46919839	46920039	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001348089)	promoter-TSS (NM_001348089)	30.0	NM_001348089	22088.0	Mm.241334	NM_021884	ENSMUSG00000014402	Tsg101	AI255943|CC2	tumor susceptibility gene 101	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-3799920-3	chr2	3799773	3799973	+	828.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	86415.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-47276893-2	chr19	47276793	47276993	+	767.700012	f1_balb.idr|f1_c57bl6.idr	intron (NM_008018, intron 11 of 14)	intron (NM_008018, intron 11 of 14)	-3304.0	NR_105961	102466782.0		NR_105961	ENSMUSG00000098786	Mir6995	Gm27576|mmu-mir-6995	microRNA 6995	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-120907603-4	chr5	120907531	120907731	+	933.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145211)	promoter-TSS (NM_145211)	-106.0	NM_145211	246730.0	Mm.14301	NM_145211	ENSMUSG00000052776	Oas1a	L3	2'-5' oligoadenylate synthetase 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-69534109-4	chr13	69534003	69534203	+	928.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001169131)	promoter-TSS (NM_001169131)	-239.0	NM_001169131	210106.0	Mm.315959	NM_198600	ENSMUSG00000034575	Papd7	LAK-1|POLK|Pols|TRF4|TRF4-1	PAP associated domain containing 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-31068706-2	chr6	31068606	31068806	+	894.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F1|SINE|Alu	-5613.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116633133-3	chr11	116633007	116633207	+	839.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6088.0	NM_172572	217344.0	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	2.95838818489337	2.1720090362008	1.53796927321332	2.39529059972277	3.3018535602108	3.77875410410323	3.72126962596733	4.48205022173081	2.47348920276489	0.000292600194024376	0.00723341441189106
Merged-chr7-99378173-2	chr7	99378073	99378273	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3345.0	NM_001362168	233552.0	Mm.286317	NM_201352	ENSMUSG00000035314	Gdpd5	BC024955|Gde2	glycerophosphodiester phosphodiesterase domain containing 5	protein-coding	-1.31349849087795	-1.28274354783242	-1.29349452597086	-1.3023256995151	-1.3130151546297	-1.28041376602105	-0.694015972326031	-1.30074492367298	2.57396649482007	0.456321314346772	1
Merged-chr3-27735371-3	chr3	27735276	27735476	+	665.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24924.0	NM_173182	72007.0	Mm.38832	NM_173182	ENSMUSG00000039286	Fndc3b	1600019O04Rik|AW550168|Fad104|mKIAA4164	fibronectin type III domain containing 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-47901951-3	chr19	47901835	47902035	+	644.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001738, intron 1 of 1)	intron (NM_001001738, intron 1 of 1)	17364.0	NM_001001738	414801.0	Mm.29457	NM_001001738	ENSMUSG00000044948	Itprip	4833424O12Rik|DANGER	inositol 1,4,5-triphosphate receptor interacting protein	protein-coding	1.69822312214049	1.27058081510327	2.20733153761281	2.33150924805389	1.71112260314041	1.90516291140388	2.22478902999469	2.25397967405109	0.238446695468349	0.810798114176305	0.998431161219273
Merged-chr1-131126645-3	chr1	131126554	131126754	+	938.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11580.0	NM_145508	226419.0	Mm.39299	NM_145508	ENSMUSG00000016526	Dyrk3	BC006704	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-98667155-4	chr2	98667083	98667283	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GSAT_MM|Satellite|Satellite	1199526.0	NM_178725	241568.0	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-128743806-3	chr1	128743813	128744013	+	827.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-151614.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	-1.8418762459921	-1.8125357239735	-1.82140854000656	-1.82869693527674	-1.56059678980999	-1.8106129477253	-1.81939992894326	-1.82739231600805	1.3620893379502	0.699511506488145	1
Merged-chr10-80063684-1	chr10	80063584	80063784	+	665.5	f0_balb.idr	exon (NM_183426, exon 17 of 32)	exon (NM_183426, exon 17 of 32)	9665.0	NM_001037741	625249.0	Mm.332810	NM_008162	ENSMUSG00000075706	Gpx4	GPx-4|GSHPx-4|PHGPx|mtPHGPx|snGPx	glutathione peroxidase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-162565723-2	chr1	162565624	162565824	+	768.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4791.0	NM_001356527	53330.0	Mm.10699	NM_016796	ENSMUSG00000026696	Vamp4	D1Ertd147e|Vamp-4	vesicle-associated membrane protein 4	protein-coding	0.512052748469981	0.259173798051689	1.02873898674859	0.247029304378758	0.732760589961673	0.260714450232966	0.253838654690652	0.688282502015902	-0.326793827703284	0.865112894947095	1
Merged-chr15-36163980-4	chr15	36163942	36164142	+	811.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081253, intron 1 of 4)	intron (NM_001081253, intron 1 of 4)	842.0	NM_001081253	78803.0	Mm.26393	NM_175281	ENSMUSG00000048230	Fbxo43	4930533G20Rik|Emi2	F-box protein 43	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-135730481-4	chr1	135730392	135730592	+	988.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007791, intron 1 of 5)	intron (NM_007791, intron 1 of 5)	1325.0	NM_007791	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-28867752-4	chr6	28867650	28867850	+	980.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019776, intron 16 of 23)	intron (NM_019776, intron 16 of 23)	-36003.0	NM_138682	192198.0	Mm.443660	NM_138682	ENSMUSG00000049939	Lrrc4	MBAG1|NGL-2|NGL2|NLG-2|Nag14	leucine rich repeat containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24073514-4	chr17	24073404	24073604	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027008)	promoter-TSS (NM_027008)	-19.0	NM_027008	69259.0	Mm.28171	NM_027008	ENSMUSG00000016946	Kctd5	2610030N08Rik|mKIAA0176	potassium channel tetramerisation domain containing 5	protein-coding	4.375773355328	4.81262594500058	4.38100574906267	4.09482641960311	4.18769019044052	2.98942715051092	4.86145837514308	4.76683255229338	-0.0703999439923577	0.879642274535199	0.998431161219273
Merged-chr3-135438677-2	chr3	135438577	135438777	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_030689)	promoter-TSS (NR_030689)	-12.0	NR_030689	319587.0	Mm.358971	NR_030689	ENSMUSG00000097032	4930539J05Rik	8030475D13Rik	RIKEN cDNA 4930539J05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-79517421-2	chr14	79517321	79517521	+	632.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286411, intron 1 of 8)	intron (NM_001286411, intron 1 of 8)	1747.0	NM_001286411	13709.0	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-157101302-4	chr1	157101199	157101399	+	974.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305061, intron 5 of 8)	intron (NM_001305061, intron 5 of 8)	7351.0	NM_001305059	73435.0	Mm.116705	NM_028540	ENSMUSG00000026592	Tex35	1700057K13Rik	testis expressed 35	protein-coding	4.56202648974233	4.72925644942765	4.75115886865131	4.96908701053049	3.62255592722525	3.25631811836198	3.93372165738598	3.37609974158484	-1.57266821203228	0.000180330681022473	0.00497000193929779
Merged-chr13-119596463-4	chr13	119596348	119596548	+	842.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177666, intron 2 of 3)	intron (NM_001177666, intron 2 of 3)	-27371.0	NM_020279	56838.0	Mm.143745	NM_020279	ENSMUSG00000074715	Ccl28	CCK1|MEC|Scya28	chemokine (C-C motif) ligand 28	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-70977135-2	chr12	70977035	70977235	+	626.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011184, intron 1 of 10)	intron (NM_011184, intron 1 of 10)	2512.0	NM_011184	19167.0	Mm.296338	NM_011184	ENSMUSG00000060073	Psma3	Lmpc8	proteasome (prosome, macropain) subunit, alpha type 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-101923908-2	chr3	101923808	101924008	+	885.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039371, intron 1 of 11)	intron (NM_001039371, intron 1 of 11)	545.0	NM_001039371	242126.0	Mm.90204	NM_001039371	ENSMUSG00000033147	Slc22a15	2610034P21Rik|4930477M19|A530052I06Rik|BB219042	solute carrier family 22 (organic anion/cation transporter), member 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-146404595-4	chr3	146404515	146404715	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253768)	promoter-TSS (NM_001253768)	-27.0	NM_001253769	99167.0	Mm.200783	NM_138744	ENSMUSG00000036825	Ssx2ip	AU014939|AU042321|Adip	synovial sarcoma, X 2 interacting protein	protein-coding	4.52882484695322	3.74091404706535	3.77851386388169	4.31555758252939	4.3513285198285	3.34959138889941	3.34697568710117	4.13759335425163	-0.350354754454254	0.475086107617721	0.927029054433838
Merged-chr15-103247459-1	chr15	103247359	103247559	+	548.0	f1_balb.idr	TTS (NM_001302339)	TTS (NM_001302339)	4217.0	NM_001302338	18022.0	Mm.457989	NM_008685	ENSMUSG00000058794	Nfe2	NF-E2|NF-E2/P45|p45|p45NFE2|p45nf-e2	nuclear factor, erythroid derived 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98031617-3	chr11	98031490	98031690	+	808.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4666.0	NM_009078	19921.0	Mm.10247	NM_009078	ENSMUSG00000017404	Rpl19	-	ribosomal protein L19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95932481-2	chr3	95932381	95932581	+	921.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253758, intron 1 of 4)	intron (NM_001253758, intron 1 of 4)	3224.0	NM_023210	66471.0	Mm.218657	NM_023210	ENSMUSG00000015749	Anp32e	2810018A15Rik|AI047746|AI326868|CPD1|LANP-L|LANPL|mLANP-L	acidic (leucine-rich) nuclear phosphoprotein 32 family, member E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-15357787-4	chr9	15357667	15357867	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_176976)	promoter-TSS (NM_176976)	21.0	NM_176976	319675.0	Mm.218317	NM_176976	ENSMUSG00000046111	Cep295	5830418K08Rik|5832426L23Rik|Gm1131|Kiaa1731	centrosomal protein 295	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-105430798-2	chr14	105430717	105430917	+	573.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045859, intron 1 of 2)	intron (NR_045859, intron 1 of 2)	3258.0	NR_045859	71362.0	Mm.410781	NR_045859	ENSMUSG00000115548	5430440P10Rik	-	RIKEN cDNA 5430440P10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-6295242-3	chr2	6295146	6295346	+	878.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040333, intron 4 of 6)	intron (NR_040333, intron 4 of 6)	-27511.0	NM_001080548	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-16670478-4	chr11	16670336	16670536	+	896.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-81767.0	NM_207655	13649.0	Mm.8534	NM_007912	ENSMUSG00000020122	Egfr	9030024J15Rik|AI552599|Erbb|Errb1|Errp|Wa5|wa-2|wa2	epidermal growth factor receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-17660136-4	chr14	17660039	17660239	+	994.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113417)	promoter-TSS (NM_001113417)	-821.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-64087717-4	chr9	64087615	64087815	+	952.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040743, intron 2 of 2)	intron (NR_040743, intron 2 of 2)	6954.0	NR_040743	76814.0	Mm.243771	NR_040743		Scarletltr	2600006L11Rik	Scarletltr, erythroid developmental long intergenic non-protein coding transcript	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-88631082-4	chr5	88630963	88631163	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359208, intron 9 of 13)	intron (NM_001359208, intron 9 of 13)	44517.0	NM_001098476	231413.0	Mm.332474	NM_178700	ENSMUSG00000044221	Grsf1	BB232551|C80280|D5Wsu31e	G-rich RNA sequence binding factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89443889-2	chr3	89443789	89443989	+	992.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146131, intron 5 of 10)	B3|SINE|B2	7185.0	NM_146131	229534.0	Mm.65906	NM_146131	ENSMUSG00000042613	Pbxip1	4732463H20Rik	pre B cell leukemia transcription factor interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-93987316-2	chr12	93987216	93987416	+	545.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	59978.0	NR_106175	102465890.0		NR_106175	ENSMUSG00000098498	Mir8099-1	Gm27917|mmu-mir-8099-1	microRNA 8099-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-52314501-5	chr14	52314272	52314472	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_015772, exon 2 of 2)	exon (NM_015772, exon 2 of 2)	1951.0	NM_001244916	50524.0	Mm.39487	NM_015772	ENSMUSG00000049532	Sall2	AI225809|AW559097|Msal-2|Sal-2|mKIAA0360|p150(Sal2)	spalt like transcription factor 2	protein-coding	0.861488026183075	1.62328415667808	0.920393733769587	1.30385264794594	1.13048988100253	0.737291355664087	1.36082312273511	0.902386605938671	-0.68999492832714	0.614330745111735	0.977250439470701
Merged-chr17-28179852-2	chr17	28179752	28179952	+	740.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172617, intron 2 of 14)	intron (NM_172617, intron 2 of 14)	2434.0	NM_172617	224656.0	Mm.267359	NM_172617	ENSMUSG00000024220	Zfp523	2810027J07|BC025615|Znf76	zinc finger protein 523	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-89872423-6	chr16	89872311	89872511	+	937.7222289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009384, intron 6 of 27)	intron (NM_009384, intron 6 of 27)	-54059.0	NM_001145887	21844.0	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-51494430-2	chr10	51494330	51494530	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291894, intron 6 of 8)	intron (NM_001291894, intron 6 of 8)	3532.0	NM_013532	14728.0	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-42504472-4	chr10	42504354	42504554	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017472, intron 1 of 3)	intron (NM_017472, intron 1 of 3)	2400.0	NM_017472	54198.0	Mm.277870	NM_017472	ENSMUSG00000019804	Snx3	SDP3	sorting nexin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-32557473-1	chr11	32557373	32557573	+	698.0	f1_balb.idr	intron (NM_009288, intron 2 of 18)	intron (NM_009288, intron 2 of 18)	24207.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	1.62049419610156	0.735256147740933	0.717550541352276	1.26972968792035	0.68303990551616	1.78468836501691	0.721502146587462	2.06241916314327	1.05764909280767	0.486879463520794	0.932610354988537
Merged-chr4-138288870-4	chr4	138288767	138288967	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010623, intron 8 of 14)	intron (NM_010623, intron 8 of 14)	-15871.0	NM_007838	13200.0	Mm.7236	NM_007838	ENSMUSG00000028757	Ddost	-	dolichyl-di-phosphooligosaccharide-protein glycotransferase	protein-coding	2.22098396178095	2.51825734500556	1.4697625903894	1.16527709028188	2.72394084489445	2.13972341351625	3.15164491116768	1.17053610252866	1.14779919290422	0.279217671022318	0.782600907240097
Merged-chr2-49359036-3	chr2	49358928	49359128	+	850.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-92458.0	NM_172663	227867.0	Mm.29167	NM_172663	ENSMUSG00000069495	Epc2	5830499L14|D2Ertd694e	enhancer of polycomb homolog 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-121315715-2	chr9	121315615	121315815	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_152160, intron 1 of 17)	intron (NR_152160, intron 1 of 17)	18213.0	NR_152160	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-79039107-4	chr15	79039007	79039207	+	967.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_013847)	TTS (NM_013847)	-2778.0	NM_015738	14429.0	Mm.390805	NM_015738	ENSMUSG00000114755	Galr3	Galnr3	galanin receptor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-136087218-2	chr3	136087118	136087318	+	625.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033350, intron 10 of 16)	intron (NM_001033350, intron 10 of 16)	238848.0	NM_001310749	242248.0	Mm.30832	NM_001033350	ENSMUSG00000037922	Bank1	A530094C12Rik|AI451642|AVIEF|BANK	B cell scaffold protein with ankyrin repeats 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-54984310-2	chr11	54984210	54984410	+	869.833374	f1_balb.idr|f1_c57bl6.idr	intron (NR_138556, intron 22 of 24)	Kanga1a|DNA|TcMar-Tc2	-21370.0	NM_001271455	57783.0	Mm.259671	NM_021327	ENSMUSG00000020400	Tnip1	ABIN|ABIN-1|ABIN1|AU018810|Naf1|Nef|VAN	TNFAIP3 interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-17452428-2	chr16	17452328	17452528	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001277231, exon 1 of 2)	5' UTR (NM_001277231, exon 1 of 2)	443.0	NM_007764	12929.0	Mm.21048	NM_007764	ENSMUSG00000006134	Crkl	1110025F07Rik|AA589403|AI325100|Crkol	v-crk avian sarcoma virus CT10 oncogene homolog-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-162550026-4	chr1	162549939	162550139	+	920.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-1694.0	NM_144877	71449.0	Mm.270569	NM_144877	ENSMUSG00000026694	Mettl13	5630401D24Rik	methyltransferase like 13	protein-coding	-0.824304660665838	-0.88927760145927	-1.06999218569642	-1.07585713136635	-0.818287444740617	-1.05685314174029	-1.06754755566929	-1.07554359523961	-0.576351167167816	0.850199307881881	1
Merged-chr9-6168520-2	chr9	6168420	6168620	+	680.166687	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027924)	promoter-TSS (NM_027924)	34.0	NM_001357397	71785.0	Mm.390122	NM_027924	ENSMUSG00000032006	Pdgfd	1110003I09Rik	platelet-derived growth factor, D polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-87695938-2	chr16	87695838	87696038	+	557.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3016.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-24249286-1	chr1	24249186	24249386	+	608.0	f1_balb.idr	intron (NM_001290691, intron 31 of 31)	intron (NM_001290691, intron 31 of 31)	54083.0	NM_001290691	12839.0	Mm.154662	NM_007740	ENSMUSG00000026147	Col9a1	Col9a-1	collagen, type IX, alpha 1	protein-coding	2.23552182225634	2.94717507862552	1.30604792003124	2.10125670091524	1.47087646687011	3.13346515866843	2.01939985956023	3.13235957254368	0.706392096172672	0.458743050155848	0.919607527898796
Merged-chr17-26467790-3	chr17	26467685	26467885	+	901.255554	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40687.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	2.71674747851028	2.77719636776001	3.57161069642474	4.12739614721826	3.96399874785634	3.54486344171791	3.67697254053184	3.83239243253334	0.48843439944519	0.38977846841921	0.878821374845813
Merged-chr14-73175990-4	chr14	73175930	73176130	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134083, intron 12 of 14)	intron (NM_134083, intron 12 of 14)	30821.0	NR_030459	751541.0		NR_030459	ENSMUSG00000076121	Mir687	Mirn687|mir-687|mmu-mir-687	microRNA 687	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-91483457-4	chr1	91483300	91483500	+	888.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11268.0	NM_028718	74019.0	Mm.318430	NM_028718	ENSMUSG00000034292	Traf3ip1	3930402D05Rik|AU041749|MIP-T3	TRAF3 interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-101856305-4	chr2	101856183	101856383	+	780.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355625, intron 1 of 8)	intron (NM_001355625, intron 1 of 8)	-17303.0	NM_001110849	72446.0	Mm.24138	NM_175181	ENSMUSG00000032841	Prr5l	2600010E01Rik|4833411O04Rik|Protor-2|Protor2	proline rich 5 like	protein-coding	-1.18168469194181	-1.15762136968968	-1.16824599128578	-1.17697337180399	-0.705222168910091	-1.15531896986813	-1.1658408098415	-1.01281529573356	2.56112959364474	0.434927719140263	1
Merged-chr2-144008559-2	chr2	144008459	144008659	+	552.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133626, intron 1 of 2)	intron (NM_133626, intron 1 of 2)	2704.0	NM_133626	81910.0	Mm.13705	NM_024281	ENSMUSG00000027422	Rrbp1	1700087N07Rik|5730465C04Rik|ES/130|mKIAA1398|mRRp0|mRRp1.8|mRRp10|mRRp15a|mRRp15b|mRRp16.8|mRRp2|mRRp41|mRRp47|mRRp5.4|p180	ribosome binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-102496358-4	chr11	102496247	102496447	+	828.18335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159492, intron 6 of 7)	intron (NM_001159492, intron 6 of 7)	-26464.0	NM_010575	16399.0	Mm.26646	NM_010575	ENSMUSG00000034664	Itga2b	AI172977|CD41|CD41B|GpIIb|alphaIIb	integrin alpha 2b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-42515132-3	chr13	42515024	42515224	+	923.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-165675.0	NM_001302635	218194.0	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111419464-2	chr12	111419364	111419564	+	603.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289487, intron 2 of 13)	intron (NM_001289487, intron 2 of 13)	2019.0	NM_001289488	74190.0	Mm.248640	NM_028807	ENSMUSG00000021280	Exoc3l4	1200009I06Rik|1600013K19Rik	exocyst complex component 3-like 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-117094953-2	chr13	117094853	117095053	+	857.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-35072.0	NR_046023	623312.0	Mm.131279	NR_046023	ENSMUSG00000114792	Gm6416	-	predicted gene 6416	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-64308212-3	chr1	64308074	64308274	+	896.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-186785.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-108344956-2	chr9	108344858	108345058	+	796.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	-2873.0	NM_001311157	22258.0	Mm.3974	NM_011678	ENSMUSG00000032612	Usp4	F730026I20Rik|Unp|mKIAA4155	ubiquitin specific peptidase 4 (proto-oncogene)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-160234781-3	chr1	160234680	160234880	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038621, intron 6 of 8)	RMER6A|LTR|ERVK	-21888.0	NM_009786	12301.0	Mm.10702	NM_009786	ENSMUSG00000014226	Cacybp	SIP	calcyclin binding protein	protein-coding	1.96315338925244	1.23246275761351	1.20087157881517	1.79643489947544	2.19227202924491	2.09433258994401	2.94778956564791	2.57801294696501	2.29165911804885	0.0226640186453451	0.195346907835381
Merged-chr10-12875065-4	chr10	12874943	12875143	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13308.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	7.03202048825657	7.14162339613597	7.61576505397742	7.27625875666959	7.27951533728013	7.5154701767209	7.06118307516233	7.16668514477257	-0.0188887860714739	0.914351431205969	0.998431161219273
Merged-chr6-108723438-3	chr6	108723361	108723561	+	912.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59598.0	NM_026011	67166.0	Mm.271178	NM_026011	ENSMUSG00000030105	Arl8b	2610313E07Rik|3100002J04Rik|Arl10c|gie1	ADP-ribosylation factor-like 8B	protein-coding	1.75697110399124	2.42445065097158	1.04151777946703	1.01125522072801	2.57103370254709	3.3582477539054	1.34469438506866	1.52618276631543	1.66964944932296	0.134043394481402	0.571666672850202
Merged-chr4-88315243-4	chr4	88315174	88315374	+	808.18335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081184, intron 21 of 43)	(TCCC)n|Simple_repeat|Simple_repeat	123652.0	NM_025760	66775.0	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124998357-2	chr6	124998257	124998457	+	821.541626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145927)	promoter-TSS (NM_001145927)	-80.0	NM_001145927	319352.0	Mm.295327	NM_175696	ENSMUSG00000030329	Pianp	AI255183|AU067746|C530028O21Rik|Panp	PILR alpha associated neural protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-158375618-3	chr2	158375532	158375732	+	562.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175692)	promoter-TSS (NM_175692)	-6.0	NM_175692	319317.0	Mm.294494	NM_175692	ENSMUSG00000044349	Snhg11	A930034L06Rik|AI854265|AL022637|AW319638|E130013N09Rik	small nucleolar RNA host gene 11	protein-coding	0.96035966620711	1.90328545213903	1.41614651798696	2.06496198879495	0.964385285191162	1.47447603129327	1.84914320022908	1.89322153730715	-0.192223361315839	0.876233098458824	0.998431161219273
Merged-chr16-44832493-4	chr16	44832401	44832601	+	952.724976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207244, intron 2 of 5)	intron (NM_207244, intron 2 of 5)	11773.0	NM_207244	239849.0	Mm.445045	NM_207244	ENSMUSG00000062082	Cd200r4	F630107N04Rik|MCD200RLa	CD200 receptor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-121531252-2	chr10	121531152	121531352	+	664.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	-55002.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	0.565820817194009	0.602948674431321	1.46416273475963	1.20259050385588	0.568197216859968	0.605616609480054	1.47948426399102	1.21067083922171	0.0362196576835743	0.982646080705041	0.998431161219273
Merged-chr11-80378022-4	chr11	80377923	80378123	+	766.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027472)	promoter-TSS (NM_027472)	-8.0	NM_027472	70591.0	Mm.86860	NM_027472	ENSMUSG00000057181	5730455P16Rik	-	RIKEN cDNA 5730455P16 gene	protein-coding	2.80562958374103	1.27055162405052	1.68229591983359	1.93885753963366	2.17246946576765	2.07985065013798	1.86384070817967	2.07287422928996	-0.0854724732253068	0.931988104030706	0.998431161219273
Merged-chr2-132816129-4	chr2	132816016	132816216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356443)	promoter-TSS (NM_001356443)	-25.0	NM_025676	66634.0	Mm.157070	NM_025676	ENSMUSG00000027353	Mcm8	5730432L01Rik	minichromosome maintenance 8 homologous recombination repair factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-144338307-3	chr2	144338209	144338409	+	737.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur3|SINE|Alu	-6229.0	NM_026924	107586.0	Mm.252750	NM_026924	ENSMUSG00000037279	Ovol2	1700108N11Rik|1810007D21Rik|M-OVO|M-OVO-A|M-OVO-B|MOVO|Ovo2|Zfp339|movo2	ovo like zinc finger 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56548262-2	chr17	56548162	56548362	+	714.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6125.0	NR_130128	100504425.0	Mm.384143	NR_130128	ENSMUSG00000110218	Gm20219	Tincr	predicted gene, 20219	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-48571470-1	chr6	48571370	48571570	+	598.0	f1_c57bl6.idr	TTS (NM_177736)	TTS (NM_177736)	1332.0	NM_001347168	71660.0	Mm.28231	NM_027852	ENSMUSG00000009281	Rarres2	0610007L05Rik|AI303516	retinoic acid receptor responder (tazarotene induced) 2	protein-coding	0.779540288005982	1.23296924892574	1.3140164231645	0.614230260282248	0.942742561996628	1.90233878951864	0.852395211966038	0.616144735019371	0.67937438056985	0.641122566195456	0.982599433509505
Merged-chr17-24745240-1	chr17	24745140	24745340	+	567.0	f1_c57bl6.idr	Intergenic	RLTR11D|LTR|ERVK	-7748.0	NM_001357342	328779.0	Mm.328848	NM_001012402	ENSMUSG00000039628	Hs3st6	3-OST-6	heparan sulfate (glucosamine) 3-O-sulfotransferase 6	protein-coding	-0.923772569202306	-0.562996481634052	-0.918041984271448	-0.920200216076014	-0.447857768560961	-0.907094860507239	-0.917424159035726	-0.919823515043604	0.61021457578152	0.845890823634888	1
Merged-chr10-77537857-3	chr10	77537778	77537978	+	965.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008404, intron 1 of 15)	intron (NM_008404, intron 1 of 15)	7530.0	NM_008404	16414.0	Mm.1137	NM_008404	ENSMUSG00000000290	Itgb2	2E6|AI528527|Cd18|LAD|LCAMB|Lfa1|MF17	integrin beta 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81497375-2	chr10	81497275	81497475	+	683.166626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_010102)	TTS (NM_010102)	-1012.0	NM_134009	103425.0	Mm.302791	NM_134009	ENSMUSG00000020238	Ncln	3100002P13Rik|AW120537	nicalin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-105145921-4	chr5	105145811	105146011	+	959.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6325.0	NM_001359080	17472.0	Mm.440525	NM_008620	ENSMUSG00000079363	Gbp4	AW228052|Mag-2|Mpa-2|Mpa2	guanylate binding protein 4	protein-coding	4.43940443936876	3.63423670111268	3.67367108563214	3.71266797295046	3.84434157722871	3.56962231009409	2.87473445711114	3.0354499110702	-0.77324415116486	0.152778700639375	0.606698648589328
Merged-chr10-17723150-4	chr10	17723051	17723251	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010828)	promoter-TSS (NM_010828)	-77.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116534440-4	chr11	116534355	116534555	+	873.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011451)	promoter-TSS (NM_011451)	-285.0	NM_011451	20698.0	Mm.20944	NM_011451	ENSMUSG00000061878	Sphk1	1110006G24Rik|Sk1|Spk1	sphingosine kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-61793938-2	chr18	61793838	61794038	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7276.0	NM_178928	106877.0	Mm.26632	NM_178928	ENSMUSG00000033032	Afap1l1	AI173486	actin filament associated protein 1-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-100507756-4	chr9	100507654	100507854	+	933.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001324530)	promoter-TSS (NM_001324530)	-898.0	NM_001324530	17973.0	Mm.181485	NM_010878	ENSMUSG00000032475	Nck1	6330586M15Rik|D230010O13Rik|Nck|Nck-1	non-catalytic region of tyrosine kinase adaptor protein 1	protein-coding	0.500886798110733	0.342987662117967	1.57694869083005	0.319297826102994	0.507314983525217	0.345922512323228	1.59571716127697	0.321141210717248	0.0410950568014028	0.98141847098692	0.998431161219273
Merged-chr7-143287463-4	chr7	143287373	143287573	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_001461, exon 1 of 1)	non-coding (NR_001461, exon 1 of 1)	9074.0	NR_001461	63830.0	Mm.356096	NR_001461	ENSMUSG00000101609	Kcnq1ot1	Kvlqt1-as|Lit1|Tssc8	KCNQ1 overlapping transcript 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-95054703-4	chr4	95054588	95054788	+	910.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2466.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129495918-4	chr4	129495827	129496027	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4737.0	NM_001085491	68233.0	Mm.424983	NM_001085491	ENSMUSG00000078554	Fam229a	1700125D06Rik	family with sequence similarity 229, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-54501929-4	chr9	54501850	54502050	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172771)	promoter-TSS (NM_172771)	-324.0	NM_172771	235380.0	Mm.93636	NM_172771	ENSMUSG00000041268	Dmxl2	6330586A12|6430411K14Rik|E130119P06Rik|mKIAA0856	Dmx-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-66215619-2	chr2	66215519	66215719	+	799.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001047604, intron 19 of 28)	intron (NM_001047604, intron 19 of 28)	40998.0	NM_001047604	73668.0	Mm.250868	NM_001047604	ENSMUSG00000034848	Ttc21b	2410066K11Rik|Thm1|aln|mKIAA1992	tetratricopeptide repeat domain 21B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-115385671-4	chr10	115385559	115385759	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001033261, exon 1 of 35)	exon (NM_001033261, exon 1 of 35)	700.0	NM_001033261	216345.0	Mm.207621	NM_001033261	ENSMUSG00000034163	Zfc3h1	BC033596|Ccdc131|Psrc2	zinc finger, C3H1-type containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-40926655-2	chr8	40926548	40926748	+	718.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_026840, intron 1 of 5)	intron (NM_026840, intron 1 of 5)	415.0	NM_026840	68797.0	Mm.284246	NM_026840	ENSMUSG00000031595	Pdgfrl	1110039P19Rik|AV013190	platelet-derived growth factor receptor-like	protein-coding	2.9653208894154	3.01931385171135	2.74118526587632	2.45856605015614	2.35178658748716	1.50848067957776	2.66122960269886	2.06594493201631	-1.24763686322911	0.123677963444493	0.551494625399044
Merged-chr7-49248094-2	chr7	49247994	49248194	+	677.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175272, intron 1 of 37)	intron (NM_175272, intron 1 of 37)	1905.0	NM_175272	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-78149990-4	chr9	78149909	78150109	+	912.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163780, intron 5 of 13)	intron (NM_001163780, intron 5 of 13)	-25905.0	NR_040401	320295.0	Mm.131285	NR_040401	ENSMUSG00000097574	C920006O11Rik	-	RIKEN cDNA C920006O11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-63932895-3	chr15	63932788	63932988	+	842.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360037, intron 11 of 11)	intron (NM_001360037, intron 11 of 11)	18427.0	NR_029414	74460.0	Mm.390801	NR_029414	ENSMUSG00000100127	Gsdmcl-ps	4933426G20Rik	gasdermin C-like, pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-67056747-1	chr6	67056647	67056847	+	572.0	f0_balb.idr	intron (NR_040278, intron 1 of 6)	intron (NR_040278, intron 1 of 6)	-19340.0	NM_007836	13197.0	Mm.72235	NM_007836	ENSMUSG00000036390	Gadd45a	AA545191|Ddit1|GADD45	growth arrest and DNA-damage-inducible 45 alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101543700-2	chr7	101543600	101543800	+	653.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12102.0	NM_007490	11871.0	Mm.439746	NM_007490	ENSMUSG00000092517	Art2a-ps	ARTC2|Art2a|Ly92a|Rt-6|Rt6|Rt6-1	ADP-ribosyltransferase 2a, pseudogene	protein-coding	-0.474401592045654	-0.299915414026948	-0.468873724299835	-0.210901949233869	-0.47389430011109	-0.29591357592014	-0.468271354496816	-0.102868977038866	0.426319130612327	0.863586779404382	1
Merged-chr4-128798104-2	chr4	128798004	128798204	+	965.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081098, intron 1 of 8)	intron (NM_001081098, intron 1 of 8)	8008.0	NM_001081098	230761.0	Mm.22616	NM_001081098	ENSMUSG00000028799	Zfp362	-	zinc finger protein 362	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180331392-4	chr1	180331262	180331462	+	870.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_003623)	promoter-TSS (NR_003623)	-813.0	NR_003623	277333.0	Mm.389223	NM_199472		Gm5069	EG277333	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-183369630-4	chr1	183369521	183369721	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177389)	promoter-TSS (NM_177389)	-56.0	NM_177389	338366.0	Mm.41152	NM_177389		Mia3	9130229H14Rik|A930039G15Rik|AU022327|B230399H06Rik|C80126|Gm1525|TANGO1|Tango	melanoma inhibitory activity 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-45378922-3	chr13	45378835	45379035	+	792.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10807.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-9237888-2	chr4	9237788	9237988	+	770.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31405.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-70651135-3	chr9	70651021	70651221	+	928.7333369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172772, intron 1 of 8)	RMER5|LTR|ERV1	6053.0	NM_172772	235461.0	Mm.170855	NM_172772	ENSMUSG00000042444	Mindy2	AI465301|B230380D07Rik|Fam63b|mKIAA1164	MINDY lysine 48 deubiquitinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118667129-2	chr9	118667029	118667229	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 8 of 27)	intron (NM_133721, intron 8 of 27)	-44563.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41333114-4	chr19	41333009	41333209	+	942.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 2 of 16)	MTE2a|LTR|ERVL-MaLR	51961.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-58324157-2	chr11	58324057	58324257	+	621.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028331)	promoter-TSS (NR_028331)	-792.0	NR_028331	319475.0	Mm.72124	NM_178761	ENSMUSG00000049755	Zfp672	4930488P06Rik|4930511N19Rik|Znf672	zinc finger protein 672	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-14887211-1	chr8	14887111	14887311	+	562.0	f1_balb.idr	Intergenic	Intergenic	-1325.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135960005-2	chr5	135959899	135960099	+	952.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001160366)	TTS (NM_001160366)	14477.0	NM_001160366	109267.0	Mm.332750	NM_001160366	ENSMUSG00000029699	Ssc4d	C330016E03Rik|S4D-SRCRB|SRCRB-S4D|Srcrb4d	scavenger receptor cysteine rich family, 4 domains	protein-coding	-0.297482728475022	-0.829629202925786	-0.83381612938606	-0.835991231851995	-0.697887866233579	-0.826947919865931	-0.657758346962532	-0.835611747469506	-1.04191781959041	0.716235759909778	1
Merged-chr8-83109966-4	chr8	83109874	83110074	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55378.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	4.54552697167818	4.16616485936859	3.79301802247143	5.34615205901353	4.65048709774663	4.12198637647113	3.43083676553287	4.98995108501983	-0.216959473004884	0.652204206702949	0.986434615290108
Merged-chr19-41265817-4	chr19	41265695	41265895	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1791.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-79126860-3	chr3	79126756	79126956	+	701.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001099624, intron 1 of 23)	intron (NM_001099624, intron 1 of 23)	18031.0	NM_001310536	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	0.76148506972142	0.535936997300074	1.05945838816296	0.805643061090743	1.18775872815863	0.537380166248037	0.530967105954675	0.926924983966946	0.190561665585421	0.908727086698328	1
Merged-chr7-132662697-2	chr7	132662597	132662797	+	978.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029609, intron 6 of 6)	RMER19B|LTR|ERVK	52054.0	NM_029609	76429.0	Mm.276721	NM_029609	ENSMUSG00000030946	Lhpp	2310007H09Rik	phospholysine phosphohistidine inorganic pyrophosphate phosphatase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88176766-2	chr3	88176666	88176866	+	855.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045997, intron 1 of 2)	B3A|SINE|B2	1019.0	NR_045997	76642.0	Mm.424420	NR_045997	ENSMUSG00000096935	1700113A16Rik	2210408E11Rik|AA408983	RIKEN cDNA 1700113A16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-90233969-4	chr9	90233864	90234064	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 3 of 12)	intron (NM_194334, intron 3 of 12)	36805.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-75884835-2	chr15	75884735	75884935	+	541.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001282443, intron 11 of 13)	intron (NM_001282443, intron 11 of 13)	3888.0	NM_001282443	223645.0		NM_001282443	ENSMUSG00000098678	Mroh6	Gm19570	maestro heat-like repeat family member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-34643116-4	chr13	34643018	34643218	+	753.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025831, intron 1 of 4)	intron (NM_025831, intron 1 of 4)	9563.0	NM_025831	66895.0	Mm.28943	NM_025831	ENSMUSG00000021411	Pxdc1	1300014I06Rik	PX domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-110788874-2	chr5	110788747	110788947	+	888.833374	f1_balb.idr|f1_c57bl6.idr	exon (NM_009469, exon 22 of 28)	exon (NM_009469, exon 22 of 28)	-8232.0	NM_001025562	56361.0	Mm.23528	NM_019700	ENSMUSG00000029507	Pus1	A730013B20Rik|MPUS1|mPus1p	pseudouridine synthase 1	protein-coding	1.42213282538055	0.806093764940004	1.75745682283841	1.40202309426847	1.22017577163645	0.809164199867737	1.57681579681614	0.783430747659313	-0.944026732237899	0.507680828842673	0.943374049681311
Merged-chr10-127634677-4	chr10	127634581	127634781	+	890.4874880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-8305.0	NM_009284	20852.0	Mm.121721	NM_009284	ENSMUSG00000002147	Stat6	-	signal transducer and activator of transcription 6	protein-coding	2.70045997609461	2.58421091558114	2.50049124007137	2.92193503819653	3.00879113518623	2.6025558202737	2.51930594101787	2.3140973183118	-0.0909697148787739	0.899960891208943	0.998431161219273
Merged-chr4-141575647-2	chr4	141575534	141575734	+	665.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_133754)	TTS (NM_133754)	24290.0	NM_001163256	74202.0	Mm.490327	NM_133754	ENSMUSG00000006219	Fblim1	2410043F08Rik|Cal|Fblp1|Gt10|migfilin|migfilin(s)	filamin binding LIM protein 1	protein-coding	2.84914771353312	1.8996890381748	2.16790102807426	2.72340121256046	2.35085123814427	2.74061128274096	1.38428971086254	2.11797045276137	-0.515724689822182	0.568668415339849	0.962718661854691
Merged-chr1-127776247-3	chr1	127776141	127776341	+	851.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028399, intron 2 of 8)	intron (NM_028399, intron 2 of 8)	2077.0	NM_028399	72949.0	Mm.268672	NM_028399	ENSMUSG00000026349	Ccnt2	2900041I18Rik|C81304|CycT2|CycT2a|CycT2b	cyclin T2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126479234-2	chr7	126479134	126479334	+	590.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4104.0	NM_011363	20399.0	Mm.8538	NM_011363	ENSMUSG00000030733	Sh2b1	AI425885|C530001K22Rik|Irip|Psm|SH2-B|SH2-Bb|Sh2bpsm1|mKIAA1299	SH2B adaptor protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-111643963-4	chr8	111643887	111644087	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358993, intron 1 of 3)	intron (NM_001358993, intron 1 of 3)	544.0	NM_011742	22640.0	Mm.4184	NM_011742	ENSMUSG00000055835	Zfp1	Fnp-1|Zfp-1|mkr-1	zinc finger protein 1	protein-coding	0.128589319101971	0.0123412132248575	0.531495166100425	0.282595430315665	0.247799192626857	0.0133567922805946	0.00883979476110747	0.286864206374213	-0.909798385334586	0.650478975868694	1
Merged-chr6-94602029-2	chr6	94601929	94602129	+	991.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026255, intron 9 of 9)	intron (NM_026255, intron 9 of 9)	4386.0	NR_106008	102466992.0		NR_106008	ENSMUSG00000098531	Mir7041	Gm27872|mmu-mir-7041	microRNA 7041	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-86046776-4	chr13	86046610	86046810	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007749)	promoter-TSS (NM_007749)	85.0	NM_007749	12867.0	Mm.378898	NM_007749	ENSMUSG00000017778	Cox7c	COXVIIc|Cox7c1	cytochrome c oxidase subunit VIIc	protein-coding	6.00503683727259	5.87100032289878	6.0219669301668	5.05422665801408	6.56139084242555	6.11940727244905	6.58961138881013	5.149762867286	0.46664936597197	0.140028560164269	0.584333051179342
Merged-chr17-64332162-4	chr17	64332053	64332253	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144859)	promoter-TSS (NM_144859)	-270.0	NM_001025309	224938.0	Mm.489681	NM_144859	ENSMUSG00000024083	Pja2	AI447901|AL022700|Neurodap1|mKIAA0438	praja ring finger ubiquitin ligase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-7235028-4	chr19	7234915	7235115	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027643, intron 2 of 7)	intron (NM_027643, intron 2 of 7)	6207.0	NM_027643	70999.0	Mm.329605	NM_027643	ENSMUSG00000024764	Naa40	4931433E08Rik|AU023197|Nat11|NatD	N(alpha)-acetyltransferase 40, NatD catalytic subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-19547033-4	chr10	19546911	19547111	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44938.0	NM_010511	15979.0	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122899473-7	chr5	122899357	122899557	+	876.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003953, intron 12 of 22)	intron (NM_001003953, intron 12 of 22)	893.0	NM_013910	30841.0	Mm.86406	NM_013910	ENSMUSG00000029475	Kdm2b	Cxxc2|Fbl10|Fbxl10|Jhdm1b|PCCX2	lysine (K)-specific demethylase 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80251757-2	chr10	80251657	80251857	+	779.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029272, intron 1 of 7)	PB1D10|SINE|Alu	2305.0	NM_029272	75406.0	Mm.28712	NM_029272	ENSMUSG00000020153	Ndufs7	1010001M04Rik	NADH dehydrogenase (ubiquinone) Fe-S protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-16490859-2	chr2	16490759	16490959	+	620.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026162, intron 1 of 13)	intron (NM_026162, intron 1 of 13)	134555.0	NM_026162	67448.0	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-186573378-2	chr1	186573278	186573478	+	799.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-14697.0	NR_131158	320449.0	Mm.404477	NR_131124	ENSMUSG00000103690	A730004F24Rik	-	RIKEN cDNA A730004F24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-48495339-4	chr9	48495235	48495435	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001326356)	promoter-TSS (NM_001326356)	-5.0	NR_136937	67010.0	Mm.76911	NM_144948	ENSMUSG00000042396	Rbm7	1200007M24Rik|1500011D06Rik|AU041934|AW554393	RNA binding motif protein 7	protein-coding	4.81069091149984	5.18084175083244	5.29969794565763	4.69486781788206	5.70868748341242	5.28898337869146	5.20500888003512	4.71742195887448	0.313446652926897	0.343404408220427	0.84406571083625
Merged-chr9-47582865-2	chr9	47582765	47582965	+	594.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	52513.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-50529740-5	chr16	50529625	50529825	+	949.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040379, intron 1 of 5)	intron (NR_040379, intron 1 of 5)	1223.0	NR_040379	619312.0	Mm.427671	NR_040379		G730013B05Rik	linc-Cblb|linc1610	RIKEN cDNA G730013B05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69919882-4	chr11	69919761	69919961	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166593, intron 1 of 6)	intron (NM_001166593, intron 1 of 6)	769.0	NM_001166590	276770.0	Mm.18026	NM_181582	ENSMUSG00000078812	Eif5a	AA410058|D19Wsu54e|Eif4d|Eif5a1|eIF-4D|eIF-5A|eIF-5A-1|eIF-5A1	eukaryotic translation initiation factor 5A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-102055872-8	chr5	102055793	102055993	+	962.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 1 of 66)	intron (NM_172882, intron 1 of 66)	14028.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-5334142-4	chr5	5334046	5334246	+	982.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011074, intron 2 of 14)	ORR1D2|LTR|ERVL-MaLR	46105.0	NM_011074	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	2.5260597298131	2.03849650770103	1.35451309836649	2.06220195432554	2.68491641028873	2.57769350056886	1.98740651816171	2.31256536880289	0.816647757088163	0.371225124351077	0.863911489096448
Merged-chr10-85102581-2	chr10	85102481	85102681	+	805.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001013028)	promoter-TSS (NM_001013028)	-46.0	NM_001013028	103266.0	Mm.335025	NM_001013028	ENSMUSG00000060935	Tmem263	AI597468	transmembrane protein 263	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-65668985-2	chr18	65668807	65669007	+	919.5	f0_balb.idr|f1_balb.idr	intron (NM_001361052, intron 6 of 8)	ID4|SINE|ID	-29361.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	1.57013049262037	1.92354629222307	2.13519919683286	1.2248979735978	1.86598601197918	2.45764548901217	2.55716494283161	2.29856727753707	1.46855842392265	0.131038588768918	0.566336454410263
Merged-chr2-18205330-3	chr2	18205216	18205416	+	666.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010804, intron 17 of 22)	intron (NM_010804, intron 17 of 22)	140731.0	NM_001252561	17354.0	Mm.209175	NM_010804	ENSMUSG00000026743	Mllt10	Af10|B130021D15Rik|D630001B22Rik|mKIAA4140	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-99329207-2	chr5	99329107	99329307	+	755.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-76280.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-51938579-4	chr1	51938487	51938687	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22609.0	NM_010863	17912.0	Mm.3390	NM_010863	ENSMUSG00000018417	Myo1b	AA406997|MIH-L|MMIa	myosin IB	protein-coding	5.28832876441365	5.06930436569821	6.14447385745856	5.78024876979308	4.85417691777331	5.7554980864657	4.90239367629098	6.30380581912668	-0.0518016549189878	0.886134612787787	0.998431161219273
Merged-chr15-80091742-1	chr15	80091642	80091842	+	610.0	f1_balb.idr	intron (NM_207708, intron 1 of 3)	CpG	408.0	NM_207708	20972.0	Mm.230301	NM_009303	ENSMUSG00000022415	Syngr1	R75468|Syngr1b|p29	synaptogyrin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-100169419-4	chr12	100169303	100169503	+	867.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-9750.0	NM_183155	217827.0	Mm.224076	NM_183155	ENSMUSG00000021179	Nrde2	6720454P05Rik	nrde-2 necessary for RNA interference, domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-99100674-4	chr13	99100557	99100757	+	997.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12736.0	NR_045495	69603.0	Mm.390632	NR_045495	ENSMUSG00000100410	2310020H05Rik	-	RIKEN cDNA 2310020H05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-152737441-5	chr2	152737311	152737511	+	921.93335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010495)	TTS (NM_010495)	1160.0	NM_001355113	15901.0	Mm.444	NM_010495	ENSMUSG00000042745	Id1	AI323524|D2Wsu140e|Idb1|bHLHb24	inhibitor of DNA binding 1	protein-coding	1.41620306582785	2.42187459199232	2.72295186443075	2.2670722912922	1.42694182497767	2.9238149629755	1.53710006049941	2.27935891480601	-0.204088332414797	0.834813335065679	0.998431161219273
Merged-chr19-7607431-2	chr19	7607331	7607531	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019516)	promoter-TSS (NM_019516)	-238.0	NM_019516	56072.0	Mm.298242	NM_019516	ENSMUSG00000024972	Lgals12	Grip1|gal-12	lectin, galactose binding, soluble 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-73902466-4	chr1	73902354	73902554	+	815.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37988.0	NR_045311	109198.0	Mm.359721	NR_045311	ENSMUSG00000100301	6030407O03Rik	-	RIKEN cDNA 6030407O03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-107899853-4	chr13	107899750	107899950	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2c|LINE|L2	-9786.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	-0.163591540573183	-0.133729686520871	1.32411515026075	-0.150779516361834	-0.161658170475341	-0.131612152669975	0.466881847234077	-0.149455802550252	-1.97474229897032	0.381724011272483	1
Merged-chr5-102066900-3	chr5	102066688	102066888	+	750.518494	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 1 of 66)	intron (NM_172882, intron 1 of 66)	3133.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-50406125-4	chr3	50406038	50406238	+	961.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011990, intron 6 of 11)	intron (NM_011990, intron 6 of 11)	37475.0	NM_011990	26570.0	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	5.15075487235439	4.76657757368852	4.66397856348835	5.27682475200547	5.78527778502014	5.8111751916157	3.27112307042212	5.43516088523138	0.442891271389007	0.308772735472852	0.809295017856989
Merged-chr17-54014412-1	chr17	54014312	54014512	+	609.0	f1_c57bl6.idr	Intergenic	Intergenic	-23781.0	NM_018751	20888.0	Mm.10108	NM_018751	ENSMUSG00000023943	Sult1c1	(PST)G|P-SULT|ST1C1|Stp2|Sult1a2|mOLFST	sulfotransferase family, cytosolic, 1C, member 1	protein-coding	0.558618608607701	0.842229858047221	0.401022945911599	1.42951044174162	0.378770301493198	0.415218038927203	0.403602953406304	1.51870996285562	-0.296838163453149	0.866427269280361	0.998431161219273
Merged-chr11-45627208-3	chr11	45627127	45627327	+	611.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-180856.0	NR_045876	100009664.0	Mm.415439	NR_045876		F630206G17Rik	-	RIKEN cDNA F630206G17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-79591381-2	chr11	79591281	79591481	+	614.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_175543, exon 1 of 15)	exon (NM_175543, exon 1 of 15)	169.0	NM_175543	268451.0	Mm.130656	NM_175543	ENSMUSG00000017639	Rab11fip4	A730072L08Rik|RAB11-FIP4|mKIAA1821	RAB11 family interacting protein 4 (class II)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-182125204-4	chr1	182125110	182125310	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012058, intron 1 of 2)	CpG	473.0	NM_012058	27058.0	Mm.273196	NM_012058	ENSMUSG00000026511	Srp9	9kDa	signal recognition particle 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-26139119-1	chr11	26139019	26139219	+	597.0	f1_c57bl6.idr	intron (NR_027973, intron 1 of 5)	Lx5|LINE|L1	-63121.0	NR_105791	102466154.0		NR_105791	ENSMUSG00000099015	Mir6372	Gm27358|mmu-mir-6372	microRNA 6372	ncRNA	1.19941805752636	0.64197649488975	0.627307269022962	2.03048843616127	0.95269687170087	0.892290037050387	0.630573324201399	1.40836685740594	-1.0103284715503	0.502839908911482	0.939633458693796
Merged-chr5-143254357-2	chr5	143254257	143254457	+	560.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_017467, exon 7 of 7)	exon (NM_017467, exon 7 of 7)	15665.0	NM_017467	54201.0	Mm.6666	NM_017467	ENSMUSG00000046658	Zfp316	Emzf1|Mzf3|Znf316	zinc finger protein 316	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-23843533-1	chr17	23843433	23843633	+	749.0	f1_c57bl6.idr	exon (NM_027644, exon 4 of 7)	exon (NM_027644, exon 4 of 7)	623.0	NM_027644	71003.0	Mm.328839	NM_027644	ENSMUSG00000024114	Prss41	4931440B09Rik|Tessp-1|Tessp1	protease, serine 41	protein-coding	1.96726879354082	1.48082557117186	2.73374974997161	3.03237086429642	2.81450851914509	2.73213650640378	4.03891678543881	2.26789839013485	1.25382945429187	0.131280505586385	0.566755615783012
Merged-chr7-128059303-4	chr7	128059203	128059403	+	918.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-3337.0	NM_001082960	16409.0	Mm.262106	NM_008401	ENSMUSG00000030786	Itgam	CD11b/CD18|CR3|CR3A|Cd11b|F730045J24Rik|Ly-40|MAC1|Mac-1|Mac-1a	integrin alpha M	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-111497276-3	chr9	111497171	111497371	+	762.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58190.0	NM_172928	245038.0	Mm.26361	NM_172928	ENSMUSG00000032500	Dclk3	BC056929|C730036H08|Dcamkl3	doublecortin-like kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-102878220-4	chr2	102878111	102878311	+	952.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039150, intron 1 of 13)	intron (NM_001039150, intron 1 of 13)	23454.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-79886839-2	chr3	79886739	79886939	+	679.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_133187, exon 1 of 4)	exon (NM_133187, exon 1 of 4)	909.0	NM_133187	68659.0	Mm.427274	NM_133187	ENSMUSG00000027955	Fam198b	1110032E23Rik|2210419I08Rik|AV011458|Ened	family with sequence similarity 198, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-97786834-4	chr15	97786725	97786925	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026353, intron 1 of 2)	intron (NM_026353, intron 1 of 2)	2460.0	NM_026353	67739.0	Mm.28955	NM_026353	ENSMUSG00000081534	Slc48a1	4930570C03Rik	solute carrier family 48 (heme transporter), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-34548155-4	chr19	34548059	34548259	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-2535.0	NM_008332	15958.0	Mm.2036	NM_008332	ENSMUSG00000045932	Ifit2	AV302338|Ifi54|P54	interferon-induced protein with tetratricopeptide repeats 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-47432662-2	chr3	47432562	47432762	+	591.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13B|LTR|ERVK	-531880.0	NR_105800	102465199.0		NR_105800	ENSMUSG00000098417	Mir6379	Gm27730|mmu-mir-6379	microRNA 6379	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-59283378-4	chr10	59283273	59283473	+	915.895874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-39923.0	NM_001316371	18451.0	Mm.2212	NM_011030	ENSMUSG00000019916	P4ha1	AL022634|P4ha	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-89429641-2	chr6	89429541	89429741	+	688.708374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001167736, intron 4 of 6)	intron (NM_001167736, intron 4 of 6)	-67028.0	NM_008881	18844.0	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43435472-2	chr4	43435372	43435572	+	745.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6338.0	NM_001162381	329831.0	Mm.454466	NM_177377	ENSMUSG00000042788	Fam166b	4833436C18Rik	family with sequence similarity 166, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-143047907-2	chr5	143047807	143048007	+	609.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359851, intron 12 of 15)	intron (NM_001359851, intron 12 of 15)	65113.0	NM_207110	108086.0	Mm.381440	NM_080561	ENSMUSG00000045078	Rnf216	2810055G22Rik|AI647468|AU019462|C86502|F830018F18Rik|TRIAD3|UIP83|Ubce7ip1	ring finger protein 216	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-108221750-2	chr11	108221650	108221850	+	620.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011101, intron 2 of 16)	intron (NM_011101, intron 2 of 16)	122138.0	NM_011101	18750.0	Mm.222178	NM_011101	ENSMUSG00000050965	Prkca	AI875142|Pkca	protein kinase C, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-81636965-4	chr17	81636868	81637068	+	935.9249880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 2 of 8)	intron (NR_104580, intron 2 of 8)	101419.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-87421977-4	chr11	87421897	87422097	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031386, intron 1 of 30)	RMER15|LTR|ERVL	-5594.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140767898-4	chr5	140767811	140768011	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010302, intron 2 of 3)	intron (NM_010302, intron 2 of 3)	43784.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-86364602-4	chr6	86364500	86364700	+	922.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1083.0	NM_025591	66488.0	Mm.422972	NM_025591	ENSMUSG00000057497	Fam136a	2010309E21Rik|AW124904|Hyccin	family with sequence similarity 136, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-57951698-2	chr4	57951598	57951798	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011660, intron 2 of 4)	intron (NM_011660, intron 2 of 4)	4713.0	NM_011660	22166.0	Mm.260618	NM_011660	ENSMUSG00000028367	Txn1	ADF|AW550880|Trx1|Txn	thioredoxin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-31305074-4	chr17	31304960	31305160	+	958.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001242427, intron 2 of 19)	intron (NM_001242427, intron 2 of 19)	8836.0	NM_001242427	224674.0	Mm.311395	NM_153062	ENSMUSG00000024036	Slc37a1	G3PP	solute carrier family 37 (glycerol-3-phosphate transporter), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-4220771-4	chr11	4220801	4221001	+	938.244019	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028022, intron 5 of 8)	intron (NM_028022, intron 5 of 8)	2650.0	NM_028022	71962.0	Mm.7852	NM_028022	ENSMUSG00000020424	Gatsl3	2410008K03Rik|Castor1	GATS protein-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-184478185-4	chr1	184478097	184478297	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	79494.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-121385666-4	chr5	121385591	121385791	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163470)	promoter-TSS (NM_001163470)	-76.0	NM_172275	231712.0	Mm.20488	NM_172275	ENSMUSG00000042726	Trafd1	1110008K06Rik|Fln29	TRAF type zinc finger domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-121314961-1	chr1	121314861	121315061	+	569.0	f0_balb.idr	intron (NM_001271532, intron 1 of 4)	intron (NM_001271532, intron 1 of 4)	12717.0	NM_001271531	72999.0	Mm.27136	NM_133748	ENSMUSG00000003721	Insig2	2900053I11Rik|C730043J18Rik|Insig-2	insulin induced gene 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-155250490-1	chr4	155250390	155250590	+	786.0	f1_c57bl6.idr	non-coding (NR_033802, exon 1 of 3)	non-coding (NR_033802, exon 1 of 3)	524.0	NR_033802	67513.0	Mm.10374	NM_001190445	ENSMUSG00000073684	Faap20	2610002J02Rik	Fanconi anemia core complex associated protein 20	protein-coding	2.17947789063359	2.08815141657039	1.24365725399537	2.48030193157337	2.51751325044095	1.94690009468593	2.4860117681376	1.22419883804929	0.173972035672633	0.868547583473478	0.998431161219273
Merged-chr2-31162250-3	chr2	31162152	31162352	+	887.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178760, intron 1 of 17)	intron (NM_178760, intron 1 of 17)	9936.0	NM_178760	277463.0	Mm.236074	NM_178760	ENSMUSG00000000194	Gpr107	9930033D15Rik|AI790205|C530034M11|mKIAA1624	G protein-coupled receptor 107	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-107097568-4	chr3	107097486	107097686	+	967.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3981.0	NM_008417	16490.0	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	3.96138471238696	2.78913344290395	3.15192454114651	3.64418830542868	2.61810405964739	3.18264609067739	2.5644469714195	2.9807140306183	-1.03853053969484	0.100898375351541	0.494458880374175
Merged-chr9-32906454-2	chr9	32906354	32906554	+	657.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_131058, exon 4 of 4)	non-coding (NR_131058, exon 4 of 4)	22512.0	NR_131058	330917.0	Mm.488283	NR_131058		Gm27162	A430016B06	predicted gene 27162	ncRNA	-0.276530739815125	-0.63699660054666	-0.640403132238471	-0.643026435153032	-0.00233129066881277	-0.636227739063133	-0.639652412242567	-0.642568464212044	1.01660784876101	0.726686765579508	1
Merged-chr10-78090242-4	chr10	78090152	78090352	+	908.908325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20884.0	NM_015790	50723.0	Mm.17819	NM_015790	ENSMUSG00000000732	Icosl	AU044799|B7-H2|B7RP-1|B7h|BG071784|GI50|GL50|GL50-B|ICOS-L|Icoslg|LICOS|Ly115l|mKIAA0653	icos ligand	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24851605-4	chr17	24851501	24851701	+	965.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159626, intron 1 of 8)	intron (NM_001159626, intron 1 of 8)	934.0	NM_001159626	14651.0	Mm.43784	NM_024284	ENSMUSG00000024158	Hagh	BC019817|Glo-2|Glo2|Rsp29	hydroxyacyl glutathione hydrolase	protein-coding	3.9763236132464	4.01017170920171	3.88110837464633	3.47366911369013	3.9582304540844	3.18410111495315	4.40884814315989	3.49177652659445	-0.00189443792680932	0.996988895930542	0.999268611847349
Merged-chr9-21134816-3	chr9	21134716	21134916	+	931.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-3541.0	NM_001205312	54721.0	Mm.20249	NM_018793	ENSMUSG00000032175	Tyk2	JTK1	tyrosine kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-4244707-2	chr18	4244607	4244807	+	574.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13B|LTR|ERVK	78875.0	NM_026092	67328.0	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55392612-3	chr14	55392510	55392710	+	844.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-86148.0	NM_001037938	28200.0	Mm.27427	NM_030686	ENSMUSG00000022210	Dhrs4	AI043103|AI790593|CR|D14Ucla2|NDRD|PHCR|PSCD|RRD|mouNRDR	dehydrogenase/reductase (SDR family) member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-121725670-2	chr9	121725570	121725770	+	575.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010918, intron 2 of 16)	intron (NM_010918, intron 2 of 16)	6489.0	NM_010918	18087.0	Mm.32842	NM_010918	ENSMUSG00000032525	Nktr	5330401F18Rik|D9Wsu172e	natural killer tumor recognition sequence	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-25500632-2	chr11	25500532	25500732	+	600.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3A|LINE|L1	174525.0	NR_045853	71234.0	Mm.158627	NR_045853	ENSMUSG00000033015	4933427E13Rik	-	RIKEN cDNA 4933427E13 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-8520723-4	chr12	8520612	8520812	+	860.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18854.0	NM_001038660	328059.0	Mm.46326	NM_177802	ENSMUSG00000020600	Slc7a15	Arpat	solute carrier family 7 (cationic amino acid transporter, y+ system), member 15	protein-coding	1.77463453927273	1.65521516693394	1.36680835092513	3.24378298910471	1.79156651395423	2.73818646195824	1.09521795826398	1.5526692330722	-0.688933850611599	0.522859600843122	0.947836760490745
Merged-chr6-145139998-4	chr6	145139863	145140063	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008511, intron 3 of 18)	intron (NM_008511, intron 3 of 18)	-5512.0	NM_001361633	16970.0	Mm.843	NM_008511	ENSMUSG00000030263	Lrmp	D6Int3|D6Int4|D6Int5|D6Int7|D6Int8|Jaw1	lymphoid-restricted membrane protein	protein-coding	5.71547073245132	6.35710303030726	5.70507342193815	5.54428993261359	5.7727548518224	6.35705863802347	5.95340183597294	5.86774805039644	0.154736917098716	0.554693476075049	0.959914380895535
Merged-chr3-144562149-3	chr3	144562059	144562259	+	757.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355234, intron 1 of 6)	L1MA8|LINE|L1	8057.0	NM_011828	23908.0	Mm.12863	NM_011828	ENSMUSG00000040151	Hs2st1	2OST|AW214369|Hs2st|mKIAA0448	heparan sulfate 2-O-sulfotransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-49204992-2	chr13	49204892	49205092	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026738, intron 3 of 5)	intron (NM_026738, intron 3 of 5)	11034.0	NM_026738	68480.0	Mm.3336	NM_026738	ENSMUSG00000037960	Card19	1110007C09Rik|AI851695|Bincard	caspase recruitment domain family, member 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55827968-5	chr19	55827862	55828062	+	863.1199949999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_138565, intron 4 of 15)	intron (NR_138565, intron 4 of 15)	-67359.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132433033-2	chr4	132432933	132433133	+	564.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10587.0	NM_175306	100169.0	Mm.158361	NM_175306	ENSMUSG00000066043	Phactr4	3110001B12Rik|AI527228|AW495572|C330013F19Rik|N28169|mKIAA4120	phosphatase and actin regulator 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-13531170-4	chr8	13531063	13531263	+	962.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31298.0	NM_025601	66501.0	Mm.46136	NM_025601	ENSMUSG00000031452	1700029H14Rik	-	RIKEN cDNA 1700029H14 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-105707396-1	chr1	105707296	105707496	+	892.0	f1_balb.idr	intron (NM_173187, intron 11 of 28)	Lx3C|LINE|L1	43535.0	NM_029349	227446.0	Mm.337339	NM_029349	ENSMUSG00000026319	2310035C23Rik	6430401N10|Kiaa1468|Relch|mKIAA1468	RIKEN cDNA 2310035C23 gene	protein-coding	-1.11017114721831	-1.22822901294121	-1.23870131823113	-1.24730358160035	-1.25495804221669	-1.22595962069861	-0.779877491848762	-1.24576378057011	1.43438402897066	0.669240522494923	1
Merged-chr14-22101741-2	chr14	22101641	22101841	+	974.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_028275, intron 2 of 6)	intron (NM_028275, intron 2 of 6)	82029.0	NM_028275	76633.0	Mm.489898	NM_028275	ENSMUSG00000063458	Lrmda	1700112E06Rik|2700009F18Rik	leucine rich melanocyte differentiation associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45816237-2	chr7	45816137	45816337	+	862.25	f1_balb.idr|f1_c57bl6.idr	TTS (NM_145963)	TTS (NM_145963)	-1921.0	NM_001112701	19158.0	Mm.272130	NM_011181	ENSMUSG00000003269	Cyth2	ARNO|CLM2|Pscd2	cytohesin 2	protein-coding	-1.7024385483431	-1.81249224917775	-1.82134771053534	-1.82862185015837	-1.70038292649591	-1.81057323376012	-1.81934302819017	-1.82731978264371	0.0376840119903864	0.991491645451152	1
Merged-chr13-23438680-2	chr13	23438580	23438780	+	969.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7663.0	NR_015492	320842.0	Mm.487476	NR_015492	ENSMUSG00000085024	C230035I16Rik	-	RIKEN cDNA C230035I16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-100670961-1	chr5	100670861	100671061	+	785.0	f1_balb.idr	intron (NM_027978, intron 1 of 6)	ORR1D2|LTR|ERVL-MaLR	3295.0	NM_027978	71883.0	Mm.260661	NM_027978	ENSMUSG00000029319	Coq2	2310002F18Rik|PHB:PPT	coenzyme Q2 4-hydroxybenzoate polyprenyltransferase	protein-coding	-0.177195333592461	-0.548474564683932	-0.552363652127835	-0.555364946980533	-0.559607289049404	-0.547598063384652	-0.551505790099277	0.182980940305783	1.2454458264875	0.657661157200512	1
Merged-chr17-34398834-4	chr17	34398740	34398940	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001001177)	promoter-TSS (NM_001001177)	20.0	NM_001163855	407788.0	Mm.73205	NM_001001177	ENSMUSG00000057246	BC051142	NG8|TSBP|Tesb|Tesbp	cDNA sequence BC051142	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-9030148-4	chr12	9030069	9030269	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029321, exon 1 of 3)	exon (NM_029321, exon 1 of 3)	172.0	NM_029321	75516.0	Mm.37581	NM_029321	ENSMUSG00000066637	Ttc32	1700013G20Rik	tetratricopeptide repeat domain 32	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-25299256-1	chr12	25299156	25299356	+	613.0	f1_c57bl6.idr	Intergenic	Intergenic	170082.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-16874635-3	chr19	16874554	16874754	+	741.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008023)	promoter-TSS (NM_008023)	-824.0	NM_008023	14240.0	Mm.7971	NM_008023	ENSMUSG00000056829	Foxb2	Fkh4	forkhead box B2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-97186020-2	chr7	97185920	97186120	+	605.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162477, intron 1 of 9)	intron (NM_001162477, intron 1 of 9)	104269.0	NM_010248	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-30733920-1	chr16	30733820	30734020	+	747.0	f0_c57.idr	Intergenic	Intergenic	134197.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	2.02334691550404	1.48962865022732	1.26891245534273	1.67610301373809	1.888630422385	1.66028935105427	1.06071611209348	1.68471031832371	-0.122442284126759	0.914843945064132	0.998431161219273
Merged-chr2-128766566-1	chr2	128766466	128766666	+	548.0	f1_c57bl6.idr	intron (NM_008587, intron 8 of 18)	intron (NM_008587, intron 8 of 18)	-51737.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	1.89480957041942	2.02124845757324	1.8308485413779	1.49973928003915	1.44339212802979	2.03669080120067	2.07587804068131	1.11704178307033	-0.263292246524094	0.807652689604753	0.998431161219273
Merged-chr10-80939413-1	chr10	80939313	80939513	+	565.0	f0_balb.idr	Intergenic	Intergenic	9322.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-60751920-2	chr13	60751820	60752020	+	694.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 22 of 26)	intron (NM_134062, intron 22 of 26)	34444.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105294171-2	chr8	105294071	105294271	+	746.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357379, intron 3 of 12)	B3|SINE|B2	1942.0	NM_001357379	277978.0	Mm.40228	NM_177788	ENSMUSG00000043251	Exoc3l	C730015A04Rik|Exoc3l1	exocyst complex component 3-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102304516-2	chr12	102304405	102304605	+	756.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161365, intron 1 of 9)	intron (NM_001161365, intron 1 of 9)	20864.0	NM_001161365	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78185075-3	chr15	78184939	78185139	+	911.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-10931.0	NM_025931	67042.0	Mm.30191	NM_025931	ENSMUSG00000016637	Ift27	2600013G09Rik|Rabl4	intraflagellar transport 27	protein-coding	3.53356655419101	2.90563691105329	2.80248153305142	3.88859749314778	3.6210415365824	3.76083408990847	2.96178861380238	3.95976574977858	0.392155123813923	0.497800662878154	0.936897994490085
Merged-chr6-122658482-4	chr6	122658398	122658598	+	902.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32074.0	NM_139218	73708.0	Mm.27982	NM_139218	ENSMUSG00000046323	Dppa3	2410075G02Rik|PCG7|PGC7|Stella	developmental pluripotency-associated 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-88631673-4	chr1	88631567	88631767	+	962.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	70524.0	NM_177305	320982.0	Mm.27968	NM_177305	ENSMUSG00000049866	Arl4c	A630084M22Rik|Arl7|LAK	ADP-ribosylation factor-like 4C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-50593161-4	chr9	50593064	50593264	+	922.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10685.0	NM_025848	66925.0	Mm.10406	NM_025848	ENSMUSG00000000171	Sdhd	3110001M13Rik|AVLL5809|C78570|PRO19626	succinate dehydrogenase complex, subunit D, integral membrane protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-50126296-4	chr18	50126176	50126376	+	989.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1925.0	NM_008292	15488.0	Mm.277857	NM_008292	ENSMUSG00000024507	Hsd17b4	17-beta-HSD|17[b]-HSD|DBP|MFE-2|MFP2|MPF-2|Mfp-2|perMFE-2	hydroxysteroid (17-beta) dehydrogenase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-152115991-2	chr4	152115891	152116091	+	753.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291010)	promoter-TSS (NM_001291010)	57.0	NM_001291010	85030.0	Mm.101198	NM_033042	ENSMUSG00000024793	Tnfrsf25	APO-3|DDR3|DR3|LARD|TR3|TRAMP|Tnfrsf12|WSL-1|WSL-LR|Wsl	tumor necrosis factor receptor superfamily, member 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-86977388-4	chr17	86977297	86977497	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145491, intron 2 of 4)	HAL1ME|LINE|L1	14286.0	NM_145491	104215.0	Mm.826	NM_145491	ENSMUSG00000024143	Rhoq	Arhq|TC10A|Tc10	ras homolog family member Q	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-22148895-5	chr10	22148855	22149055	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001254744, exon 1 of 2)	exon (NM_001254744, exon 1 of 2)	315.0	NM_001254744	319887.0	Mm.177746	NM_001254744	ENSMUSG00000097327	E030030I06Rik	-	RIKEN cDNA E030030I06 gene	protein-coding	2.17369850473773	1.06870125313162	3.03927280727652	1.83470965377561	1.59325208688245	1.07602169191304	2.74608899598975	1.01284415816667	-0.866386487076449	0.468234777686473	0.924409990887115
Merged-chr11-3203218-8	chr11	3203095	3203295	+	830.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001166549, exon 1 of 18)	5' UTR (NM_001166549, exon 1 of 18)	176.0	NM_001166549	74203.0	Mm.255649	NM_023743	ENSMUSG00000020454	Eif4enif1	2610509L04Rik|A930019J01Rik|AA410001|AU021239|Clast4|D11Ertd166e	eukaryotic translation initiation factor 4E nuclear import factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-80785311-4	chr1	80785215	80785415	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26762.0	NM_175291	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-93461434-1	chr2	93461334	93461534	+	602.0	f1_balb.idr	intron (NR_040532, intron 2 of 4)	intron (NR_040532, intron 2 of 4)	417.0	NM_001271461	12521.0	Mm.4261	NM_007656	ENSMUSG00000027215	Cd82	AA682076|AL023070|C33|IA4|Kai1|Tspan27	CD82 antigen	protein-coding	0.76828172911829	1.66546195500532	0.599547066685549	0.586096192091067	1.53526861237669	0.620243313796455	0.603330663216049	2.03048337659571	1.17827964109312	0.458119754617991	0.919570891419578
Merged-chr1-136008100-4	chr1	136007997	136008197	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001160145)	promoter-TSS (NM_001160145)	-122.0	NM_001160145	66241.0	Mm.41773	NM_025439	ENSMUSG00000026411	Tmem9	1500015G18Rik|AW545782	transmembrane protein 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-112775011-1	chr2	112774911	112775111	+	565.0	f0_balb.idr	intron (NM_001319156, intron 47 of 103)	intron (NM_001319156, intron 47 of 103)	156594.0	NM_001355631	74268.0	Mm.315125	NM_028844	ENSMUSG00000003604	Aven	1700013A01Rik|1700056A21Rik|mAven-L|mAven-S	apoptosis, caspase activation inhibitor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-5811676-4	chr2	5811624	5811824	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133837, intron 6 of 12)	intron (NM_133837, intron 6 of 12)	-33310.0	NM_016918	53893.0	Mm.251904	NM_016918	ENSMUSG00000025817	Nudt5	-	nudix (nucleoside diphosphate linked moiety X)-type motif 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127564192-3	chr10	127564112	127564312	+	886.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 41 of 88)	B1_Mus2|SINE|Alu	-29653.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	-1.06932346315282	-1.04545378193536	-0.220844647149311	-1.06494782147003	-1.06867040657128	-1.04264807175102	-1.05547001227371	-1.06448932552894	-3.08190232315036	0.346744811462451	1
Merged-chr10-44029757-3	chr10	44029656	44029856	+	856.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-24910.0	NM_172393	11630.0	Mm.292082	NM_172393	ENSMUSG00000019866	Crybg1	AI462491|AI463325|Aim1	crystallin beta-gamma domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-60892379-4	chr2	60892274	60892474	+	995.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	-10936.0	NM_001141931	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-124751945-1	chr4	124751845	124752045	+	891.0	f0_balb.idr	promoter-TSS (NR_151694)	promoter-TSS (NR_151694)	-591.0	NR_151694	102634646.0	Mm.348378	NR_151694		Gm12915	-	predicted gene 12915	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191183475-4	chr1	191183351	191183551	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007498)	promoter-TSS (NM_007498)	-118.0	NM_007498	11910.0	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-30849944-4	chr5	30849849	30850049	+	939.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133350, intron 1 of 6)	intron (NM_133350, intron 1 of 6)	-11858.0	NM_001310516	100732.0	Mm.332295	NM_133350	ENSMUSG00000029166	Mapre3	AI790651|EB2|EB3|EBF3|RP3	microtubule-associated protein, RP/EB family, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-46912696-4	chr14	46912590	46912790	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037221, intron 2 of 12)	intron (NM_001037221, intron 2 of 12)	29725.0	NM_001037221	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	2.33014410125139	2.82391888093657	3.30375784163099	2.30369330354354	3.8326658889925	4.04654197763398	4.47355340730316	2.91061191051848	1.83623908899688	0.00341603418703989	0.0498608007008573
Merged-chr2-143992266-2	chr2	143992166	143992366	+	905.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_133626, intron 1 of 2)	intron (NM_133626, intron 1 of 2)	18997.0	NM_133626	81910.0	Mm.13705	NM_024281	ENSMUSG00000027422	Rrbp1	1700087N07Rik|5730465C04Rik|ES/130|mKIAA1398|mRRp0|mRRp1.8|mRRp10|mRRp15a|mRRp15b|mRRp16.8|mRRp2|mRRp41|mRRp47|mRRp5.4|p180	ribosome binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-108226659-4	chr3	108226560	108226760	+	919.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008596)	promoter-TSS (NM_008596)	-61.0	NM_008596	17306.0	Mm.316885	NM_008596	ENSMUSG00000027887	Sypl2	AI552439|Mg29	synaptophysin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-16242110-2	chr14	16242010	16242210	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001359883, exon 2 of 3)	exon (NM_001359883, exon 2 of 3)	1221.0	NM_001359883	71147.0	Mm.197960	NM_027695	ENSMUSG00000021786	Oxsm	4933425A18Rik|C80494	3-oxoacyl-ACP synthase, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-105871153-2	chr5	105871053	105871253	+	731.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-5415.0	NR_030777	54367.0	Mm.248876	NM_018759	ENSMUSG00000029290	Zfp326	5730470H14Rik|ZAN75|Znf326	zinc finger protein 326	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-186932121-3	chr1	186932034	186932234	+	725.527771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR51B_Mm|LTR|ERVK?	-35282.0	NM_033077	110957.0	Mm.108054	NM_033077	ENSMUSG00000039224	D1Pas1	Pl10	DNA segment, Chr 1, Pasteur Institute 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-100546128-5	chr9	100545995	100546195	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010878)	promoter-TSS (NM_010878)	39.0	NM_010878	17973.0	Mm.181485	NM_010878	ENSMUSG00000032475	Nck1	6330586M15Rik|D230010O13Rik|Nck|Nck-1	non-catalytic region of tyrosine kinase adaptor protein 1	protein-coding	6.15608842299218	6.69374374242153	6.83888986166093	5.82623667349951	6.80557114343936	7.03643901400578	7.31059561063918	6.05548229667916	0.469192051719579	0.0816203191840641	0.436669406827241
Merged-chr6-49073860-4	chr6	49073794	49073994	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029353)	promoter-TSS (NM_029353)	99.0	NM_029353	75593.0	Mm.439947	NM_029353	ENSMUSG00000029815	Malsu1	2410003K15Rik|Matsu1	mitochondrial assembly of ribosomal large subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56858422-3	chr17	56858352	56858552	+	898.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039114, intron 6 of 14)	intron (NM_001039114, intron 6 of 14)	15995.0	NM_001039114	328845.0	Mm.179421	NM_001039114	ENSMUSG00000024207	Acsbg2	Bgr	acyl-CoA synthetase bubblegum family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-59244547-4	chr2	59244448	59244648	+	828.229187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 2 of 20)	intron (NM_175464, intron 2 of 20)	83698.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-84726794-1	chr2	84726694	84726894	+	699.0	f1_c57bl6.idr	intron (NM_133840, intron 1 of 2)	intron (NM_133840, intron 1 of 2)	474.0	NM_133840	98985.0	Mm.21583	NM_133840	ENSMUSG00000027079	Clp1	AI462438|Heab	CLP1, cleavage and polyadenylation factor I subunit	protein-coding	-0.336561499519729	-0.321786373933211	0.371796777073729	0.326608517840189	-0.335635407964054	-0.320700217747318	-0.325547248855099	-0.329693214039222	-3.75013372382206	0.14171742686148	1
Merged-chr13-94296583-3	chr13	94296488	94296688	+	763.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10757.0	NM_001346609	107767.0	Mm.201455	NM_029153	ENSMUSG00000021687	Scamp1	4930505M11Rik|AI415563|AW122395	secretory carrier membrane protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171658678-4	chr1	171658562	171658762	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5625.0	NM_144539	75345.0	Mm.164642	NM_144539	ENSMUSG00000038179	Slamf7	19A|19A24|4930560D03Rik|CRACC|CS1	SLAM family member 7	protein-coding	2.50780389297292	2.16193575143372	2.5996508284628	2.97319658216609	2.928477916537	3.53336848293744	2.4708959855521	3.99917383429566	1.34019703969889	0.0559549686569706	0.34857098335739
Merged-chr15-73060278-4	chr15	73060184	73060384	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164641, intron 1 of 17)	intron (NM_001164641, intron 1 of 17)	920.0	NM_001164641	76510.0	Mm.158902	NM_029640	ENSMUSG00000047921	Trappc9	1810044A24Rik|2900005P22Rik|4632408O18Rik|Ibp|Nibp|TRS130|mKIAA1882	trafficking protein particle complex 9	protein-coding	3.7996893604993	3.91350006868787	3.92198163888706	3.53065253292087	4.31635648180655	4.26292328157623	3.16926046088483	2.80587990524805	0.00876246619015222	0.987155044216422	0.998431161219273
Merged-chr2-156721890-2	chr2	156721790	156721990	+	864.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040505)	promoter-TSS (NR_040505)	611.0	NM_001042487	228836.0	Mm.22094	NM_146128	ENSMUSG00000061689	Dlgap4	AI225853|BC024558|DAP-4|DAP4|SAPAP-4|Sapap4|WBP16	DLG associated protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-87850240-1	chr8	87850140	87850340	+	659.0	f1_balb.idr	intron (NM_033327, intron 3 of 7)	intron (NM_033327, intron 3 of 7)	-45801.0	NM_001310520	94187.0	Mm.23452	NM_033327	ENSMUSG00000045333	Zfp423	Ebfaz|Roaz|Zfp104|Znf423|ataxia1|mKIAA0760|nur12	zinc finger protein 423	protein-coding	0.419347907299712	-0.141010710924683	0.634605231946836	-0.150360683580935	-0.00443407954149547	-0.139823539340071	-0.145120078137073	-0.149648008353862	-3.06930678006346	0.185776736506854	1
Merged-chr3-84513026-3	chr3	84512914	84513114	+	768.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293801, intron 6 of 7)	intron (NM_001293801, intron 6 of 7)	-32575.0	NM_001033301	229474.0	Mm.331107	NM_001033301	ENSMUSG00000041842	Fhdc1	6330505N24Rik|Gm126	FH2 domain containing 1	protein-coding	-1.11301502176196	-1.08843027643983	-1.10065540268584	-0.337074946373353	-1.11242900008663	-1.08578104058399	-1.09788790207088	-1.10867028474752	-2.94135471364006	0.382729701075202	1
Merged-chr1-152603033-2	chr1	152602933	152603133	+	710.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346119, intron 2 of 17)	MLT1A1|LTR|ERVL-MaLR	22184.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-125177094-3	chr5	125176973	125177173	+	577.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253905, intron 1 of 42)	intron (NM_001253905, intron 1 of 42)	2141.0	NM_001253905	20602.0	Mm.278646	NM_011424	ENSMUSG00000029478	Ncor2	N-CoR|SMRT|SMRTe	nuclear receptor co-repressor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-35585340-8	chr7	35585204	35585404	+	898.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145633)	promoter-TSS (NM_145633)	278.0	NM_145840	243923.0	Mm.222680	NM_145840	ENSMUSG00000056043	Rgs9bp	R9AP|Rgs9-1bp	regulator of G-protein signalling 9 binding protein	protein-coding	1.28984882197073	1.33975440056084	0.752938740271334	0.742253495518413	1.18680968765523	1.81667304730549	1.54737259120492	0.744130121814851	1.27212754331446	0.378947522732778	0.871666483463932
Merged-chr5-129787213-4	chr5	129787042	129787242	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009838)	promoter-TSS (NM_009838)	111.0	NM_133900	100678.0	Mm.271784	NM_133900	ENSMUSG00000029446	Psph	AI480570|PSP|PSPase	phosphoserine phosphatase	protein-coding	5.97337945274683	6.09990819900804	6.22654925265882	5.95999351733833	6.17686104250272	6.09157270867897	6.39876528364481	5.86356423643399	0.0861238904963778	0.701296268023814	0.998431161219273
Merged-chr11-6366097-4	chr11	6365988	6366188	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29037.0	NM_001005867	52915.0	Mm.1144	NM_028601	ENSMUSG00000041164	Zmiz2	Zimp7	zinc finger, MIZ-type containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-101656507-2	chr14	101656407	101656607	+	556.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016723, intron 2 of 8)	(CAGA)n|Simple_repeat|Simple_repeat	2540.0	NM_016723	50933.0	Mm.275970	NM_016723	ENSMUSG00000022111	Uchl3	-	ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-119345924-2	chr6	119345824	119346024	+	582.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033382, intron 34 of 37)	intron (NM_001033382, intron 34 of 37)	-15158.0	NM_172492	211187.0	Mm.121498	NM_172492	ENSMUSG00000055003	Lrtm2	A230084J22|AI841794	leucine-rich repeats and transmembrane domains 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167240576-4	chr2	167240476	167240676	+	788.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008968)	promoter-TSS (NM_008968)	-39.0	NM_008968	19223.0	Mm.2339	NM_008968	ENSMUSG00000017969	Ptgis	Cyp8|Cyp8a1|Pgis	prostaglandin I2 (prostacyclin) synthase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-121329100-1	chr14	121329000	121329200	+	737.0	f1_balb.idr	intron (NM_145465, intron 2 of 10)	intron (NM_145465, intron 2 of 10)	50130.0	NM_145465	223255.0	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	-0.188165983520189	0.746086096603961	-0.174449284382721	-0.179570111846421	-0.186879576192967	-0.166399952718474	0.593900487017484	-0.178672485000898	-0.38745866875723	0.873464354513356	1
Merged-chr1-86406495-4	chr1	86406393	86406593	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17132.0	NM_001319227	14767.0	Mm.389159	NM_010341	ENSMUSG00000026237	Nmur1	FM-3|Gpr66|NMU-R1|NMU1R|NmU-R	neuromedin U receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-85369629-4	chr6	85369519	85369719	+	971.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003955, intron 1 of 5)	intron (NM_001003955, intron 1 of 5)	5015.0	NM_177466	52055.0	Mm.220334	NM_177466	ENSMUSG00000051343	Rab11fip5	9130206P09Rik|C75969|D6Ertd32e|GAF1|RIP11	RAB11 family interacting protein 5 (class I)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-23574376-4	chr13	23574313	23574513	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178188)	promoter-TSS (NM_178188)	32.0	NM_178188	319165.0	Mm.390553	NM_178188	ENSMUSG00000071478	Hist1h2ad	-	histone cluster 1, H2ad	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-104035079-3	chr2	104034966	104035166	+	616.972229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355505, intron 3 of 10)	intron (NM_001355505, intron 3 of 10)	-6705.0	NM_175161	70986.0	Mm.460738	NM_175161		4931422A03Rik	-	RIKEN cDNA 4931422A03 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-127273147-2	chr1	127273047	127273247	+	814.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145128, intron 2 of 17)	intron (NM_145128, intron 2 of 17)	68161.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-40631458-4	chr19	40631374	40631574	+	924.2708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304721, intron 1 of 9)	intron (NM_001304721, intron 1 of 9)	19108.0	NM_001304721	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	1.24215872630322	1.52137252519136	1.47068101946793	0.978178503291799	1.58090930351573	1.00135813604633	2.03022775267546	1.55731877134816	1.12118236168218	0.375938378353805	0.869176081465326
Merged-chr6-87038399-4	chr6	87038301	87038501	+	985.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4445.0	NM_013528	14583.0	Mm.19893	NM_013528	ENSMUSG00000029992	Gfpt1	2810423A18Rik|AI324119|AI449986|GFA|GFAT|GFAT1|GFAT1m|Gfpt	glutamine fructose-6-phosphate transaminase 1	protein-coding	2.78949864816371	4.56055151785764	4.4673015561706	3.99575151872062	3.15300433993495	4.00220104455022	3.94337024672686	4.32831261301276	-0.253364506365973	0.637137412181031	0.982417279970648
Merged-chr17-31038013-1	chr17	31037913	31038113	+	1000.0	f1_balb.idr	Intergenic	Intergenic	-19681.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	-0.830356650690491	-0.816345487784543	-0.820864282505992	-0.824381175130209	-0.829456510389805	-0.815160754889565	-0.819869816454248	0.181663512156448	4.00589950645271	0.136956758805186	1
Merged-chr10-93911560-3	chr10	93911452	93911652	+	830.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20350.0	NM_019648	56307.0	Mm.289329	NM_019648	ENSMUSG00000036112	Metap2	4930584B20Rik|A930035J23Rik|AI047573|AL024412|AU014659|Amp2|Mnpep|p67|p67eIF2	methionine aminopeptidase 2	protein-coding	2.27615950837644	2.69815740860459	2.82517967564815	1.44352751372742	2.71336700726355	3.57416855205445	2.84767543211156	2.54258854338652	1.09342418855971	0.170413320424595	0.63774766639248
Merged-chr3-22143438-4	chr3	22143301	22143501	+	860.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030732, intron 1 of 15)	intron (NM_030732, intron 1 of 15)	66749.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-60730056-2	chr18	60729889	60730089	+	678.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001348146, intron 1 of 6)	MIR3|SINE|MIR	-2423.0	NM_001348103	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	0.636502734366535	-0.0846268461381347	0.601282024315899	-0.0944979812612	0.052235424500858	-0.0833743443147601	-0.0889637955611772	-0.0937451557629663	-3.14474403698075	0.168274972592014	1
Merged-chr16-24750246-2	chr16	24750146	24750346	+	625.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145954, intron 2 of 7)	intron (NM_001145954, intron 2 of 7)	28391.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-106370527-1	chr9	106370427	106370627	+	630.0	f1_c57bl6.idr	intron (NM_153459, intron 1 of 2)	MIRc|SINE|MIR	1895.0	NM_153459	235584.0	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	2.69280625972222	3.29169974177701	1.77412918186479	2.1884340618166	2.30712696439874	2.21075661116418	1.56748601176111	1.52162699037028	-1.46686847678204	0.109837196087016	0.519238250059898
Merged-chr8-122454568-4	chr8	122454432	122454632	+	853.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_013914, exon 3 of 3)	3' UTR (NM_013914, exon 3 of 3)	-3210.0	NR_015497	319574.0	Mm.271989	NR_015497	ENSMUSG00000110656	Gm20735	-	predicted gene, 20735	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-104140523-4	chr9	104140418	104140618	+	859.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13875.0	NM_145700	252837.0	Mm.269254	NM_145700	ENSMUSG00000079355	Ackr4	A630091E18Rik|CCBP2|CCR11|CCX-CKR|CCX-CKR1|Ccrl1|Cmkbrl1|PPR1|VSHK1	atypical chemokine receptor 4	protein-coding	1.52370983135091	2.41996380291593	1.80356097205	1.74898223724636	0.997641276119786	2.34928328593396	1.05039686383253	1.6175335447581	-0.762382245124517	0.513600119806464	0.9463431014646
Merged-chr15-8633773-4	chr15	8633655	8633855	+	901.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_148938)	TTS (NM_148938)	77052.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111944599-4	chr12	111944507	111944707	+	991.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029464)	promoter-TSS (NR_029464)	-125.0	NR_029464	77675.0	Mm.98331	NR_029464	ENSMUSG00000113769	5033406O09Rik	9130204G15Rik	RIKEN cDNA 5033406O09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-13164538-3	chr8	13164432	13164632	+	851.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010684, intron 1 of 8)	intron (NM_010684, intron 1 of 8)	5371.0	NM_010684	16783.0	Mm.16716	NM_010684	ENSMUSG00000031447	Lamp1	CD107a|LGP-120|LGP-A|Lamp-1|P2B|Perk	lysosomal-associated membrane protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-153981039-3	chr1	153980914	153981114	+	963.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	81085.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-173081101-3	chr2	173081002	173081202	+	548.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38423.0	NM_001081387	664799.0	Mm.389396	NM_001081387	ENSMUSG00000070495	Ctcfl	Boris	CCCTC-binding factor (zinc finger protein)-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-102698861-2	chr13	102698761	102698961	+	808.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360519, intron 1 of 2)	intron (NM_001360519, intron 1 of 2)	5303.0	NM_008533	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-45801475-2	chr17	45801359	45801559	+	670.5	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	66953.0	NR_152153	433111.0	Mm.213441	NR_152153	ENSMUSG00000097727	F630040K05Rik	-	RIKEN cDNA F630040K05 gene	ncRNA	0.904729450929765	1.03348071810627	0.994178241274402	1.85326501500462	1.89515689130122	3.26421600031471	3.14987133304436	1.69510838813417	3.5641606499735	0.00208102215504148	0.0344546050821357
Merged-chr5-136950460-2	chr5	136950360	136950560	+	765.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-2815.0	NM_001163243	66437.0	Mm.25849	NM_025562	ENSMUSG00000019054	Fis1	2010003O14Rik|Ttc11	fission, mitochondrial 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-35678320-7	chr8	35678154	35678354	+	768.3809809999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001081279, exon 3 of 3)	3' UTR (NM_001081279, exon 3 of 3)	-89234.0	NR_040376	100504714.0	Mm.381744	NR_040376	ENSMUSG00000097357	Gm16793	-	predicted gene, 16793	ncRNA	2.52219380821234	2.58231092914034	2.49845864577199	3.06866143902204	2.54240265114718	2.29963132311039	2.8476755919358	2.76333344712502	-0.124558819691371	0.863601433667423	0.998431161219273
Merged-chr2-11333084-4	chr2	11332964	11333164	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6425.0	NR_040369	100503147.0	Mm.91961	NR_040369	ENSMUSG00000086006	Gm13293	-	predicted gene 13293	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-136126377-4	chr1	136126273	136126473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1I|LTR|ERVL-MaLR	4810.0	NR_046170	329253.0	Mm.487858	NR_046167	ENSMUSG00000086264	Gm15850	6530439I21	predicted gene 15850	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124811450-2	chr6	124811350	124811550	+	748.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001306050)	TTS (NM_001306050)	2532.0	NM_001306053	14794.0	Mm.261906	NM_013539	ENSMUSG00000038451	Spsb2	AI461677|C9|Grcc9|SSB2	splA/ryanodine receptor domain and SOCS box containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46900446-2	chr8	46900346	46900546	+	697.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR82B|LTR|ERVL	-86441.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-36847816-2	chr11	36847716	36847916	+	761.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011856, intron 2 of 28)	intron (NM_011856, intron 2 of 28)	96425.0	NM_001290702	23964.0	Mm.439889	NM_011856	ENSMUSG00000049336	Tenm2	Odz2|Odz3|Ten-2|Ten-m2	teneurin transmembrane protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-6071054-2	chr2	6070954	6071154	+	768.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	59131.0	NM_144883	227545.0	Mm.133542	NM_144883	ENSMUSG00000045319	Proser2	5430407P10Rik|AU067770	proline and serine rich 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-53594929-2	chr9	53594829	53595029	+	839.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_144784, intron 3 of 11)	B3|SINE|B2	15421.0	NM_144784	110446.0	Mm.293233	NM_144784	ENSMUSG00000032047	Acat1	6330585C21Rik|Acat	acetyl-Coenzyme A acetyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-16381147-2	chr19	16381047	16381247	+	654.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008139, intron 6 of 6)	intron (NM_008139, intron 6 of 6)	-54520.0	NM_008137	14675.0	Mm.313181	NM_008137	ENSMUSG00000024697	Gna14	AU023208	guanine nucleotide binding protein, alpha 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-79629631-2	chr1	79629531	79629731	+	882.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_183027, intron 1 of 4)	intron (NM_183027, intron 1 of 4)	42341.0	NM_183027	252903.0	Mm.32409	NM_183027	ENSMUSG00000054702	Ap1s3	1190009B22|Jr2|[s]3A	adaptor-related protein complex AP-1, sigma 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-78733585-3	chr14	78733445	78733645	+	865.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081336)	promoter-TSS (NM_001081336)	-816.0	NM_001081336	380921.0	Mm.89591	NM_001081336	ENSMUSG00000034731	Dgkh	5930402B05Rik|D130015C16|DGK	diacylglycerol kinase, eta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-47359384-2	chr19	47359284	47359484	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008018, intron 5 of 14)	intron (NM_008018, intron 5 of 14)	-85795.0	NR_105961	102466782.0		NR_105961	ENSMUSG00000098786	Mir6995	Gm27576|mmu-mir-6995	microRNA 6995	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-8622358-2	chr11	8622258	8622458	+	689.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 1 of 30)	intron (NM_001083587, intron 1 of 30)	42177.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-13237792-3	chr2	13237705	13237905	+	740.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009105, intron 3 of 8)	intron (NM_009105, intron 3 of 8)	33610.0	NM_009105	20163.0	Mm.905	NM_009105	ENSMUSG00000026727	Rsu1	RsuI|rsp-1	Ras suppressor protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-84267014-3	chr2	84266934	84267134	+	839.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	158232.0	NM_018782	54598.0	Mm.75467	NM_018782	ENSMUSG00000059588	Calcrl	AV071593|CRLR	calcitonin receptor-like	protein-coding	3.74151350232335	2.68859153094652	3.38085430430982	3.42109253801753	2.73978110652445	2.38027957565055	2.867564860298	1.80939432978907	-1.52389594627307	0.0289178787541734	0.231099051482619
Merged-chr6-29530959-2	chr6	29530859	29531059	+	736.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252382, intron 1 of 8)	intron (NM_001252382, intron 1 of 8)	1677.0	NM_001252382	27056.0	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5956882-4	chr19	5956779	5956979	+	765.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164057, intron 4 of 17)	intron (NM_001164057, intron 4 of 17)	7327.0	NM_001164057	18969.0	Mm.209931	NM_008893	ENSMUSG00000024833	Pola2	AI573378	polymerase (DNA directed), alpha 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-10834214-3	chr15	10834117	10834317	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5166.0	NR_040357	100502601.0	Mm.399434	NR_040357		Gm19276	-	predicted gene, 19276	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-11126730-2	chr4	11126630	11126830	+	976.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_151526, exon 3 of 3)	non-coding (NR_151526, exon 3 of 3)	2772.0	NR_151526	100503518.0	Mm.102270	NR_151526	ENSMUSG00000086765	Gm11827	-	predicted gene 11827	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-132227833-4	chr3	132227734	132227934	+	804.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	142542.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27976510-1	chr17	27976410	27976610	+	1000.0	f0_balb.idr	intron (NM_181413, intron 2 of 24)	intron (NM_181413, intron 2 of 24)	67204.0	NM_181413	224650.0	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131828748-2	chr1	131828648	131828848	+	785.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173865, intron 1 of 10)	intron (NM_173865, intron 1 of 10)	736.0	NM_173865	98396.0	Mm.389181	NM_173865	ENSMUSG00000013275	Slc41a1	AI573938|B230315F01Rik	solute carrier family 41, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-33492512-4	chr8	33492424	33492624	+	978.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8213.0	NR_033589	628431.0	Mm.376526	NR_033589		Hmgb1-rs17	Hmg1-rs17	high mobility group box 1, related sequence 17	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-88924507-3	chr18	88924388	88924588	+	972.1333619999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30281.0	NM_018821	54607.0	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-168231523-2	chr2	168231423	168231623	+	914.333374	f1_balb.idr|f1_c57bl6.idr	exon (NM_001160330, exon 1 of 1)	exon (NM_001160330, exon 1 of 1)	901.0	NM_001160330	69372.0	Mm.482182	NM_001160330	ENSMUSG00000074576	Mocs3	1700020H17Rik|Uba4	molybdenum cofactor synthesis 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-84690872-2	chr18	84690772	84690972	+	748.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-5170.0	NM_023149	66054.0	Mm.29646	NM_023149	ENSMUSG00000024644	Cndp2	0610010E05Rik|C76600|Cn2|Dip-2|Pep-1|Pep1	CNDP dipeptidase 2 (metallopeptidase M20 family)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-128788694-2	chr6	128788594	128788794	+	718.916626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008527)	promoter-TSS (NM_008527)	-53.0	NM_008527	17059.0	Mm.480764	NM_008527	ENSMUSG00000030325	Klrb1c	AI462337|CD161|Klrb1b|Ly-59|Ly55c|Ly59|NK-RP1|NK1.1|NKR-P1.9|NKRP1|NKRP140|Nk-1|Nk-1.2|Nk1|Nk1.2|Nkrp1b|Nkrp1c|ly-55c	killer cell lectin-like receptor subfamily B member 1C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-99458849-2	chr9	99458749	99458949	+	964.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001165957, intron 1 of 9)	intron (NM_001165957, intron 1 of 9)	2606.0	NM_001165957	623534.0	Mm.484967	NM_001165957		Nme9	Txndc6	NME/NM23 family member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-128233191-2	chr7	128233091	128233291	+	565.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4166.0	NM_146205	233912.0	Mm.475117	NM_146205	ENSMUSG00000042178	Armc5	AW049683|BC032200	armadillo repeat containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-102354354-2	chr6	102354254	102354454	+	728.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008779, intron 3 of 21)	RLTR17|LTR|ERVK	88254.0	NR_131017	75893.0	Mm.2968	NR_131017	ENSMUSG00000107563	4930587E11Rik	4930523E13Rik|Gm44188	RIKEN cDNA 4930587E11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-151187168-4	chr5	151187075	151187275	+	923.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153382, intron 1 of 13)	intron (NR_153382, intron 1 of 13)	3018.0	NM_001163493	243362.0	Mm.209272	NM_146258	ENSMUSG00000016128	Stard13	DLC2|GT650	StAR-related lipid transfer (START) domain containing 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-9131098-2	chr4	9130998	9131198	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-138195.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-66147767-4	chr14	66147677	66147877	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144803, intron 5 of 6)	intron (NM_144803, intron 5 of 6)	6817.0	NM_144803	110902.0	Mm.57350	NM_144803	ENSMUSG00000022041	Chrna2	Acra-2|Acra2|BC011490	cholinergic receptor, nicotinic, alpha polypeptide 2 (neuronal)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-95433532-2	chr8	95433432	95433632	+	840.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008187, intron 1 of 5)	intron (NM_008187, intron 1 of 5)	1337.0	NM_008187	14894.0	Mm.2080	NM_008187	ENSMUSG00000031796	Cfap20	2600014O15Rik|AL024127|Gtl3|T10-2A2	cilia and flagella associated protein 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-50250799-2	chr11	50250699	50250899	+	678.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13A1|LTR|ERVK	-12267.0	NR_132733	17001.0	Mm.245151	NM_008521	ENSMUSG00000020377	Ltc4s	-	leukotriene C4 synthase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84194383-1	chr8	84194283	84194483	+	797.0	f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-14135.0	NR_029740	387216.0		NR_029740	ENSMUSG00000065611	Mir23a	Mirn23a|mir-23a|mmu-mir-23a	microRNA 23a	ncRNA	0.558921628597724	0.440104002052469	0.879182880331262	0.588589011607831	0.796098536423456	0.932165709764556	0.434620035147815	0.957967099396852	1.02680644072717	0.529656043463675	1
Merged-chr12-57196869-3	chr12	57196771	57196971	+	931.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172577, intron 1 of 9)	CpG	601.0	NM_172577	217593.0	Mm.32835	NM_172577	ENSMUSG00000035472	Slc25a21	9930033G19Rik|A630030I10|BB158148	solute carrier family 25 (mitochondrial oxodicarboxylate carrier), member 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69774440-2	chr11	69774340	69774540	+	664.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_029348, intron 1 of 3)	intron (NM_029348, intron 1 of 3)	8528.0	NM_029348	75580.0	Mm.426361	NM_029348	ENSMUSG00000018750	Zbtb4	2310026P19Rik|9230111I22Rik|mKIAA1538	zinc finger and BTB domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-164084196-4	chr2	164084089	164084289	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021420, intron 3 of 10)	intron (NM_021420, intron 3 of 10)	10011.0	NM_021420	58231.0	Mm.234472	NM_021420	ENSMUSG00000018209	Stk4	AI447339|AU020804|Kas-2|Mst1|Ysk3	serine/threonine kinase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-65100147-2	chr14	65100047	65100247	+	724.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2041.0	NM_001360385	54616.0	Mm.103748	NM_018788	ENSMUSG00000021978	Extl3	2900009G18Rik|AU040105|Ext1l|mKIAA0519	exostoses (multiple)-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-75066713-2	chr8	75066613	75066813	+	864.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001136259, intron 13 of 15)	intron (NM_001136259, intron 13 of 15)	-26905.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	-0.0599717716232887	0.567126893383739	-0.0492300513842107	-0.0532677914920096	0.421232995599227	-0.0428171431034979	0.413888982068151	-0.0525623864327845	0.501678093517486	0.826470725395836	1
Merged-chr18-84889085-2	chr18	84888985	84889185	+	612.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVB7_1-LTR_MM|LTR|ERVK	37747.0	NM_001348159	109672.0	Mm.31018	NM_025797	ENSMUSG00000024646	Cyb5a	0610009N12Rik|Cyb5	cytochrome b5 type A (microsomal)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-116985021-1	chr12	116984921	116985121	+	545.0	f1_balb.idr	intron (NM_011215, intron 11 of 22)	intron (NM_011215, intron 11 of 22)	166248.0	NR_033538	100038689.0	Mm.445351	NR_033538	ENSMUSG00000099907	Gm10421	-	predicted gene 10421	ncRNA	-2.18233058068552	-2.15536956715525	-2.16352280018114	-2.04193253143548	-2.18043796738662	-2.15360272754651	-2.16167708693786	-2.16902129354933	-0.683654500252594	0.846597994014493	1
Merged-chr12-113487867-3	chr12	113487768	113487968	+	569.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1697.0	NM_001009545	238405.0	Mm.442216	NM_001009545	ENSMUSG00000051804	Adam6b	4930523C11Rik	a disintegrin and metallopeptidase domain 6B	protein-coding	-2.18138529563533	-2.15523716995652	-2.1631445789866	-2.16963996020037	-2.05513010215571	-2.15352360143315	-2.16135451490766	-2.16847729006863	0.759018020146679	0.829933115115583	1
Merged-chr11-76847057-4	chr11	76846979	76847179	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007754)	promoter-TSS (NM_007754)	-71.0	NM_007754	12874.0	Mm.276736	NM_007754	ENSMUSG00000020841	Cpd	AA960140|AW322530|D830034L15Rik	carboxypeptidase D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126807488-4	chr8	126807320	126807520	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41600.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59721757-4	chr15	59721669	59721869	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	73115.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	3.51397486697913	3.22798499497014	3.73848588717061	4.05025964488194	4.40181698023084	4.83162073588123	4.46587167193552	4.67785747731699	1.24482939638674	0.00370858618738489	0.0530130465562874
Merged-chr15-40047400-3	chr15	40047296	40047496	+	848.68335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155348, intron 1 of 2)	MLT1A1|LTR|ERVL-MaLR	2208.0	NR_155348	102636079.0	Mm.421381	NR_155348	ENSMUSG00000115142	Gm33251	-	predicted gene, 33251	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-99040412-2	chr11	99040312	99040512	+	632.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010517)	promoter-TSS (NM_010517)	-832.0	NM_010517	16010.0	Mm.233799	NM_010517	ENSMUSG00000017493	Igfbp4	AI875747|Deb2|IBP-4|IGFBP-4	insulin-like growth factor binding protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-36724359-4	chr16	36724257	36724457	+	898.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285788, intron 7 of 7)	intron (NM_001285788, intron 7 of 7)	30379.0	NM_001285791	106347.0	Mm.17807	NM_134109	ENSMUSG00000022900	Ildr1	AU041483|AU044638	immunoglobulin-like domain containing receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-29315877-2	chr17	29315777	29315977	+	608.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-3005.0	NM_023734	74116.0	Mm.30950	NM_023734	ENSMUSG00000024011	Pi16	1200009H11Rik|Cripi|PI-16	peptidase inhibitor 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-31071353-2	chr6	31071253	31071453	+	643.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8260.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-118478067-1	chr7	118477967	118478167	+	877.0	f1_balb.idr	Intergenic	Intergenic	13908.0	NM_001033380	319622.0	Mm.323386	NM_001033380	ENSMUSG00000095115	Itpripl2	C130081G24|E030018N11Rik	inositol 1,4,5-triphosphate receptor interacting protein-like 2	protein-coding	0.390822678549259	0.213596560193162	-0.118742951772184	-0.121949423777264	-0.126457476848056	0.0682922917472116	0.0485375942511246	0.0316374130419845	-0.991905060471133	0.639630929455512	1
Merged-chr17-26504538-7	chr17	26504412	26504612	+	998.5476070000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3960.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171451189-4	chr1	171451061	171451261	+	861.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172647, intron 1 of 9)	intron (NM_172647, intron 1 of 9)	13600.0	NM_172647	16456.0	Mm.294882	NM_172647	ENSMUSG00000038235	F11r	9130004G24|AA638916|ESTM33|JAM|JAM-1|JAM-A|Jcam|Jcam1|Ly106	F11 receptor	protein-coding	2.8195583476071	3.16416296437726	2.60785904073412	3.06080793612392	2.84325465087705	3.08660884857773	1.89546979450749	3.71618545555197	0.213724483419413	0.765045104980999	0.998431161219273
Merged-chr3-108958124-4	chr3	108958025	108958225	+	990.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001078646, intron 6 of 7)	intron (NM_001078646, intron 6 of 7)	17568.0	NM_001078646	66715.0	Mm.158124	NM_025723	ENSMUSG00000045662	Henmt1	4921515J06Rik|Hen1|mHEN1	HEN1 methyltransferase homolog 1 (Arabidopsis)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-114890293-4	chr7	114890196	114890396	+	981.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58354.0	NR_040317	101786.0	Mm.395157	NR_040317	ENSMUSG00000108379	A730082K24Rik	AU044236	RIKEN cDNA A730082K24 gene	ncRNA	1.72665877947099	2.59192701826271	1.22195995468574	2.51478651567448	1.88300708770198	2.39420864703046	1.22937705065364	2.82777019279493	0.191373562680633	0.855880049818094	0.998431161219273
Merged-chr1-92679014-4	chr1	92678929	92679129	+	945.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30188.0	NM_153114	260301.0	Mm.219545	NM_153114	ENSMUSG00000044055	Otos	OTOSP	otospiralin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-143141417-2	chr6	143141317	143141517	+	596.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_153819, intron 5 of 8)	(TC)n|Simple_repeat|Simple_repeat	12514.0	NR_153819	102633311.0	Mm.333484	NR_153819		Gm31108	Gm31169	predicted gene, 31108	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-116275727-4	chr8	116275640	116275840	+	884.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-229275.0	NM_029297	75465.0	Mm.23114	NM_029297	ENSMUSG00000034467	Dynlrb2	1700009A04Rik|DNLC2B|Dncl2b	dynein light chain roadblock-type 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-72013916-1	chr8	72013816	72014016	+	808.0	f1_c57bl6.idr	Intergenic	Lx|LINE|L1	-4290.0	NM_024444	72054.0	Mm.160020	NM_024444	ENSMUSG00000003484	Cyp4f18	1810054N16Rik|Cyp4f3|Cypf18	cytochrome P450, family 4, subfamily f, polypeptide 18	protein-coding	1.59251692990904	2.80925726691975	2.20291606532278	0.742889792634934	1.47974929075905	0.797951757693416	0.770940705823458	0.746788235811365	-3.17115851890729	0.0228967110226627	0.196881083743364
Merged-chr5-8055855-4	chr5	8055749	8055949	+	816.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080974)	promoter-TSS (NM_001080974)	-693.0	NM_001080974	109552.0	Mm.96211	NM_025618	ENSMUSG00000003161	Sri	2210417O06Rik|2900070H08Rik|Sor	sorcin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32288196-4	chr2	32288096	32288296	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133852)	promoter-TSS (NM_133852)	-57.0	NM_133852	99412.0	Mm.106376	NM_133852	ENSMUSG00000002546	Golga2	AW555139|GM130|mKIAA4150	golgi autoantigen, golgin subfamily a, 2	protein-coding	5.72569908440545	5.67029724290755	5.81669876035573	6.00772256127007	5.74534583288887	5.7056138240316	5.87682699844916	5.95754818401359	0.014857436363499	0.950381986782952	0.998431161219273
Merged-chr2-33847278-2	chr2	33847178	33847378	+	579.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175184, intron 2 of 9)	intron (NM_175184, intron 2 of 9)	40668.0	NM_175184	72543.0	Mm.254914	NM_175184	ENSMUSG00000038740	Mvb12b	2610200O14Rik|2610528K11Rik|AI414895|Fam125b	multivesicular body subunit 12B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-41740880-2	chr3	41740780	41740980	+	882.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_155540, intron 1 of 20)	intron (NR_155540, intron 1 of 20)	1634.0	NR_155540	67161.0	Mm.331001	NM_001081411	ENSMUSG00000059834	Sclt1	2610207F23Rik|4931421F20Rik|CAGGS-SB10|Tg(ACTB-sb10)1Dla|Tg(CAG-sb10)1Dla	sodium channel and clathrin linker 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-132686664-4	chr7	132686540	132686740	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029609, intron 6 of 6)	intron (NM_029609, intron 6 of 6)	75997.0	NM_029609	76429.0	Mm.276721	NM_029609	ENSMUSG00000030946	Lhpp	2310007H09Rik	phospholysine phosphohistidine inorganic pyrophosphate phosphatase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-106574711-4	chr5	106574595	106574795	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-116529.0	NM_001005477	104382.0	Mm.271593	NM_001005477	ENSMUSG00000034384	Barhl2	E130309B19Rik|MBH1	BarH like homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150239692-3	chr4	150239566	150239766	+	917.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023119, intron 2 of 11)	PB1D10|SINE|Alu	2342.0	NM_001025388	433182.0	Mm.70666	NM_001025388	ENSMUSG00000059040	Eno1b	EG433182|Eno1|Gm5506	enolase 1B, retrotransposed	protein-coding	0.828773139193535	1.31204459990564	0.905201372409349	1.00081686523977	0.836010448835941	0.582742959833605	0.574167708773146	1.00707548854706	-1.3988989914311	0.357269075902511	1
Merged-chr9-96390494-2	chr9	96390394	96390594	+	619.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-26063.0	NM_001357212	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	-1.31349849087795	-1.28274354783242	-1.29349452597086	-1.3023256995151	-1.3130151546297	-1.28041376602105	-0.694015972326031	-1.30074492367298	2.57396649482007	0.456321314346772	1
Merged-chr17-47898839-1	chr17	47898739	47898939	+	579.0	f1_c57bl6.idr	intron (NM_028767, intron 2 of 16)	intron (NM_028767, intron 2 of 16)	25793.0	NM_028767	74123.0	Mm.240062	NM_028767	ENSMUSG00000023991	Foxp4	1200010K03Rik|2310007G05Rik|mFKHLA	forkhead box P4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-8974697-2	chr3	8974595	8974795	+	589.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009412, intron 1 of 5)	ID_B1|SINE|B4	-10549.0	NM_001025261	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	1.16477623266833	2.03352913064782	0.686698957451339	0.672720963561791	1.6129608710378	1.76028555807308	0.690631434810834	0.675188476080967	0.0113756857056081	0.994111266184974	0.998431161219273
Merged-chr3-146159578-4	chr3	146159466	146159666	+	854.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005846, intron 1 of 13)	ORR1B1|LTR|ERVL-MaLR	9392.0	NM_001005846	68279.0	Mm.116862	NM_026656	ENSMUSG00000011008	Mcoln2	3300002C04Rik|AI549968|C86638|TRPML2	mucolipin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-86692108-4	chr11	86692018	86692218	+	810.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_175004, exon 3 of 3)	3' UTR (NM_175004, exon 3 of 3)	8037.0	NM_001098810	217057.0	Mm.24868	NM_175004	ENSMUSG00000072582	Ptrh2	A230072I16Rik|Bit1|CGI-147	peptidyl-tRNA hydrolase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-147351094-2	chr4	147350994	147351194	+	949.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039209, intron 1 of 2)	intron (NM_001039209, intron 1 of 2)	175228.0	NM_001039209	195531.0	Mm.270762	NM_001039209	ENSMUSG00000078496	Zfp982	Gm13152	zinc finger protein 982	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-90084513-3	chr15	90084400	90084600	+	859.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-139811.0	NM_001033441	380959.0	Mm.17853	NM_001033441	ENSMUSG00000075470	Alg10b	AA469671|AU045404|AW123895|C85569|Deaf1|Gm917|nse5	asparagine-linked glycosylation 10B (alpha-1,2-glucosyltransferase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-132793722-3	chr7	132793624	132793824	+	999.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_212473, intron 1 of 4)	intron (NM_212473, intron 1 of 4)	-6789.0	NM_175268	77938.0	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-115382337-2	chr10	115382237	115382437	+	653.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025780, intron 1 of 2)	B1_Mur3|SINE|Alu	2098.0	NM_025780	66816.0	Mm.32314	NM_025780	ENSMUSG00000020137	Thap2	2900040O07Rik|9030625G08Rik|AI450385|AI649097	THAP domain containing, apoptosis associated protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-114294131-3	chr7	114294032	114294232	+	814.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18016.0	NM_011965	26440.0	Mm.121265	NM_011965	ENSMUSG00000030751	Psma1	C2|HC2|Pros-30|alpha-type	proteasome (prosome, macropain) subunit, alpha type 1	protein-coding	0.00379728509335256	0.0223227650935696	0.0162762429372869	0.0115964251327399	0.404329279348759	0.0236828790103568	0.498729170245628	0.845975391942042	4.11007078877577	0.0550914756605845	1
Merged-chr3-116191579-4	chr3	116191466	116191666	+	893.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61878.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133010661-1	chr4	133010561	133010761	+	542.0	f1_balb.idr	promoter-TSS (NM_146155)	promoter-TSS (NM_146155)	-845.0	NM_146155	230793.0	Mm.31816	NM_146155	ENSMUSG00000037692	Ahdc1	D030015G18Rik	AT hook, DNA binding motif, containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-53735783-4	chr11	53735690	53735890	+	937.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14996.0	NM_010558	16191.0	Mm.4461	NM_010558	ENSMUSG00000036117	Il5	Il-5	interleukin 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78977017-2	chr15	78976917	78977117	+	985.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_138579, intron 11 of 23)	intron (NM_138579, intron 11 of 23)	-6039.0	NM_001024716	110253.0	Mm.123714	NM_138579	ENSMUSG00000033088	Triobp	AI428493|EST478828|Tara|mKIAA1662	TRIO and F-actin binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-31864045-2	chr11	31863945	31864145	+	597.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6895.0	NM_001290676	67579.0	Mm.339792	NM_026252	ENSMUSG00000020300	Cpeb4	Cpe-bp4|Cpeb-4|mCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-75701391-3	chr2	75701299	75701499	+	693.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132727, intron 1 of 1)	intron (NR_132727, intron 1 of 1)	3264.0	NR_132727	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-120057231-4	chr1	120057121	120057321	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001012322, intron 12 of 13)	HAL1|LINE|L1	16559.0	NM_019432	170706.0	Mm.24750	NM_019432	ENSMUSG00000050777	Tmem37	AI173373|AW540203|Pr|Pr1	transmembrane protein 37	protein-coding	4.31642027485489	3.70065926642008	4.7084726707384	4.02335201648376	3.68098977523825	3.30941821455316	3.51241692313973	3.20070227772035	-1.13417404341774	0.0200696764177536	0.179877473351749
Merged-chr9-56041877-4	chr9	56041780	56041980	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011992)	promoter-TSS (NM_011992)	35.0	NM_011992	26611.0	Mm.1782	NM_011992	ENSMUSG00000032320	Rcn2	AA408742|Tcbp49	reticulocalbin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-69156642-4	chr3	69156531	69156731	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_126533, intron 2 of 2)	intron (NR_126533, intron 2 of 2)	25398.0	NR_126533	381452.0	Mm.331067	NM_001243000	ENSMUSG00000094763	Gm1647	-	predicted gene 1647	ncRNA	5.61857102558773	6.86852477007505	5.56713806665725	6.41252320247418	6.38375585444702	6.387499781349	6.00147248444246	6.46529498985942	0.112616004832732	0.689446463496879	0.996533206832645
Merged-chr4-14930409-3	chr4	14930313	14930513	+	765.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001243100)	promoter-TSS (NM_001243100)	-228.0	NM_001243100	100038514.0	Mm.331495	NM_001243100		Gm11837	-	predicted gene 11837	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-95496893-1	chr16	95496793	95496993	+	571.0	f1_c57bl6.idr	intron (NM_001302183, intron 2 of 8)	intron (NM_001302183, intron 2 of 8)	33472.0	NM_001302179	13876.0	Mm.164531	NM_133659	ENSMUSG00000040732	Erg	D030036I24Rik	ETS transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-102627093-2	chr9	102626993	102627193	+	713.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001301689)	promoter-TSS (NM_001301689)	797.0	NM_181394	69010.0	Mm.2000	NM_181394	ENSMUSG00000035048	Anapc13	1810004D07Rik|APC13|SWM1	anaphase promoting complex subunit 13	protein-coding	1.1309474429554	1.4208021012459	0.72456938189867	0.903675617041071	1.01564301984754	1.65657658291671	1.37646983342955	0.71676698195935	0.711732940705618	0.614743267358076	0.977257714216349
Merged-chr1-75133088-2	chr1	75132988	75133188	+	720.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_194333, intron 3 of 11)	intron (NM_194333, intron 3 of 11)	802.0	NM_194333	22626.0	Mm.68157	NM_194333	ENSMUSG00000026205	Slc23a3	SVCT3|Yspl1	solute carrier family 23 (nucleobase transporters), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-120023960-4	chr6	120023809	120024009	+	910.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198703, intron 1 of 27)	L3|LINE|CR1	10402.0	NR_030487	735290.0		NR_030487	ENSMUSG00000076217	Mir706	Mirn706|mir-706|mmu-mir-706	microRNA 706	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-164458345-2	chr1	164458200	164458400	+	568.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009721)	promoter-TSS (NM_009721)	55.0	NM_009721	11931.0	Mm.4550	NM_009721	ENSMUSG00000026576	Atp1b1	Atp4b|Atpb|Atpb-1|NKbeta1	ATPase, Na+/K+ transporting, beta 1 polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-83404561-2	chr16	83404461	83404661	+	704.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	-966582.0	NR_040567	75247.0	Mm.417813	NR_040567		4930553E22Rik	-	RIKEN cDNA 4930553E22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124415930-4	chr6	124415834	124416034	+	919.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175933)	promoter-TSS (NM_175933)	-79.0	NM_001360570	19305.0	Mm.22418	NM_008995	ENSMUSG00000005069	Pex5	AW212715|ESTM1|PTS1-BP|PTS1R|PXR1P|Pxr1|X83306	peroxisomal biogenesis factor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-102219622-2	chr11	102219522	102219722	+	853.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001284248, intron 3 of 28)	intron (NM_001284248, intron 3 of 28)	10528.0	NR_106179	102465892.0		NR_106179	ENSMUSG00000098863	Mir8101	Gm27705|mmu-mir-8101	microRNA 8101	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-54754764-4	chr14	54754679	54754879	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016972, intron 3 of 10)	intron (NM_016972, intron 3 of 10)	27107.0	NM_016972	50934.0	Mm.276831	NM_016972	ENSMUSG00000022180	Slc7a8	AA408822|LAT2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	protein-coding	6.55705754858168	5.64265615236315	6.06513364428841	6.75598704033797	6.35661860137527	6.05288525449216	5.68653055232562	6.36279419014609	-0.198428798332923	0.457508793132146	0.919462395309797
Merged-chr6-8511641-2	chr6	8511541	8511741	+	645.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133236, intron 1 of 7)	intron (NM_133236, intron 1 of 7)	2041.0	NM_133236	170772.0	Mm.210787	NM_133236	ENSMUSG00000029638	Glcci1	2310047L21Rik|A130036A18Rik|Fam117c|Gig18|Tssn1	glucocorticoid induced transcript 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-28154102-2	chr9	28154002	28154202	+	811.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177906, intron 1 of 7)	intron (NM_177906, intron 1 of 7)	362833.0	NM_177906	330908.0	Mm.379474	NM_177906	ENSMUSG00000062257	Opcml	2900075O15Rik|3732419F12|AI844366|B930023M13Rik|C230027C17|Gm181|Obcam	opioid binding protein/cell adhesion molecule-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65197383-2	chr9	65197283	65197483	+	552.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17307.0	NM_177460	214424.0	Mm.31129	NM_177460	ENSMUSG00000032392	Parp16	ARTD15|BC055447|C79952|PARP-16	poly (ADP-ribose) polymerase family, member 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-97232032-2	chr3	97231932	97232132	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4668.0	NM_029933	77578.0	Mm.226175	NM_029933	ENSMUSG00000038256	Bcl9	2610202E01Rik|8030475K17Rik|A330041G23Rik|Gm130	B cell CLL/lymphoma 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16922707-3	chr7	16922604	16922804	+	744.266663	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007590, intron 1 of 5)	intron (NM_007590, intron 1 of 5)	1328.0	NM_007590	12315.0	Mm.288630	NM_007590	ENSMUSG00000019370	Calm3	CaMA|Cam3|Camc|R75142	calmodulin 3	protein-coding	-1.50874880059862	-1.47511716453926	-1.4852876488768	-1.49364198752927	-1.50638792193216	-0.992828729615453	-1.48298527415345	-1.4921465649048	2.3185461113984	0.50391666537493	1
Merged-chr5-96163008-3	chr5	96162914	96163114	+	983.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1024.0	NM_144910	231464.0	Mm.28374	NM_144910	ENSMUSG00000034724	Cnot6l	4932442K20Rik	CCR4-NOT transcription complex, subunit 6-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-122068093-4	chr14	122067991	122068191	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33417.0	NM_001037744	223262.0	Mm.297637	NM_001037744	ENSMUSG00000071229	Timm8a2	-	translocase of inner mitochondrial membrane 8A2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129861571-3	chr4	129861449	129861649	+	924.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40841.0	NM_001164745	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	3.4847102525918	2.80828572193184	3.82579296758512	4.01852687304353	1.45710243175895	2.18737749222988	1.30505450724929	1.25192790768514	-4.20720877127379	6.4323738426523e-06	0.000318031406720367
Merged-chr6-38354477-4	chr6	38354376	38354576	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001347122, exon 1 of 13)	5' UTR (NM_001347122, exon 1 of 13)	127.0	NM_001347122	78781.0	Mm.25243	NM_028421	ENSMUSG00000029826	Zc3hav1	1200014N16Rik|2900058M19Rik|9130009D18Rik|9830115L13Rik|ARTD13|D6Bwg1452e|ZAP	zinc finger CCCH type, antiviral 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-181931238-4	chr2	181931126	181931326	+	739.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60000.0	NM_001205282	672125.0	Mm.489571	NM_001205282	ENSMUSG00000098505	Gm14496	-	predicted gene 14496	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-8667183-4	chr3	8667077	8667277	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010423)	promoter-TSS (NM_010423)	-139.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-105380093-4	chr13	105379967	105380167	+	874.392822	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3C|LINE|L1	-63626.0	NM_008308	15550.0	Mm.4716	NM_008308	ENSMUSG00000021721	Htr1a	Gpcr18	5-hydroxytryptamine (serotonin) receptor 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10520602-4	chr19	10520502	10520702	+	782.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025333, intron 1 of 3)	B2_Mm2|SINE|B2	4607.0	NM_025333	66072.0	Mm.180063	NM_025333	ENSMUSG00000024668	Sdhaf2	0610038F07Rik|AA407634|AW049997	succinate dehydrogenase complex assembly factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-58113341-4	chr13	58113261	58113461	+	827.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001362415, exon 1 of 15)	5' UTR (NM_001362415, exon 1 of 15)	286.0	NM_001362415	100503085.0	Mm.379256	NM_001195075	ENSMUSG00000014164	Klhl3	7530408C15Rik|AI430941|EG627648	kelch-like 3	protein-coding	0.409045878160003	0.475539483973424	0.59700215479327	0.885830903498965	0.735803947736129	0.292136466393091	0.458693436391764	0.280928882438848	-0.973236085821202	0.577229910609338	1
Merged-chr14-27344735-4	chr14	27344636	27344836	+	939.383301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289687, intron 1 of 9)	intron (NM_001289687, intron 1 of 9)	8699.0	NM_001289687	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-49060268-2	chr11	49060168	49060368	+	728.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145164, intron 1 of 1)	intron (NM_001145164, intron 1 of 1)	3944.0	NM_001145164	100039796.0	Mm.482363	NM_001145164	ENSMUSG00000078921	Tgtp2	TGTP	T cell specific GTPase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78895872-4	chr15	78895777	78895977	+	923.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3891.0	NR_133564	20401.0	Mm.4462	NM_009164	ENSMUSG00000022436	Sh3bp1	3BP-1	SH3-domain binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34983848-2	chr17	34983748	34983948	+	591.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001204274, intron 2 of 4)	Lx|LINE|L1	1718.0	NM_030597	27756.0	Mm.165735	NM_030597	ENSMUSG00000007050	Lsm2	D17H6S56E-2|D17H6S56E2|Dmapl|Dmpkap|G7b|Sm-X5|SmX5|snRNP	LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-23589507-2	chr13	23589407	23589607	+	819.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177653, intron 1 of 1)	intron (NM_001177653, intron 1 of 1)	-3537.0	NM_001290530	319179.0	Mm.440391	NM_178194	ENSMUSG00000047246	Hist1h2be	-	histone cluster 1, H2be	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76434667-2	chr15	76434567	76434767	+	684.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162489, intron 26 of 30)	intron (NM_001162489, intron 26 of 30)	1453.0	NR_105919	102465576.0		NR_105919	ENSMUSG00000099260	Mir6954	Gm27770|mmu-mir-6954	microRNA 6954	ncRNA	-1.28451676766315	-1.25711067446772	-1.26714238771239	-0.980081947054919	-1.01484593254337	-1.25493676035931	-1.26487142772269	-1.27390771731504	-0.106098541793575	0.975485400703059	1
Merged-chr13-5868970-3	chr13	5868848	5869048	+	666.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011803, exon 4 of 4)	3' UTR (NM_011803, exon 4 of 4)	7459.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-19666030-4	chr2	19665924	19666124	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7962.0	NM_027715	71198.0	Mm.83981	NM_027715	ENSMUSG00000043415	Otud1	4933428L19Rik	OTU domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-62188341-2	chr10	62188241	62188441	+	782.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_197996, intron 7 of 7)	intron (NM_197996, intron 7 of 7)	5886.0	NR_106122	102465767.0		NR_106122	ENSMUSG00000099185	Mir7662	Gm27876|mmu-mir-7662	microRNA 7662	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-77763998-2	chr11	77763898	77764098	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13237.0	NM_001291213	360013.0	Mm.341248	NM_011586	ENSMUSG00000000631	Myo18a	MAJN|MyoPDZ|MysPDZ|SP-R210	myosin XVIIIA	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-173940529-3	chr1	173940426	173940626	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302649, intron 2 of 9)	Lx8b|LINE|L1	1966.0	NM_001302649	15950.0	Mm.463437	NM_008328	ENSMUSG00000039997	Ifi203	Ifi203a|Ifi203b|Mndal	interferon activated gene 203	protein-coding	2.8229255630142	3.49373635641519	2.2538632258331	1.62721655481864	5.24385367069125	5.14743223227188	5.21155459817093	4.95743935969698	3.34458450201798	5.23319722901095e-11	1.20745962218603e-08
Merged-chr10-42269552-4	chr10	42269464	42269664	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019740, intron 2 of 3)	intron (NM_019740, intron 2 of 3)	7178.0	NM_019740	56484.0	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69327722-2	chr11	69327622	69327822	+	954.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010599, intron 1 of 13)	intron (NM_010599, intron 1 of 13)	1464.0	NM_010599	16499.0	Mm.232472	NM_010599	ENSMUSG00000018470	Kcnab3	C330022D06Rik|Kcnab4|mKv(beta)4	potassium voltage-gated channel, shaker-related subfamily, beta member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28452154-3	chr7	28452017	28452217	+	665.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001141921)	promoter-TSS (NM_001141921)	-110.0	NR_030567	100124445.0		NR_030567	ENSMUSG00000077998	Mir466f-2	Mirn466f-2	microRNA 466f-2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-114567895-4	chr5	114567805	114568005	+	928.9833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001004180)	promoter-TSS (NM_001004180)	-346.0	NM_001004180	433940.0	Mm.194212	NM_001004180	ENSMUSG00000041930	Fam222a	-	family with sequence similarity 222, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-30618437-4	chr10	30618334	30618534	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025798)	promoter-TSS (NM_025798)	-68.0	NM_025798	66847.0	Mm.46218	NM_025798	ENSMUSG00000019791	Hint3	0610010I17Rik|AV009015|HINT-3|HINT-4|HINT4	histidine triad nucleotide binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-21096689-4	chr11	21096596	21096796	+	685.770813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023324, intron 1 of 6)	Lx8|LINE|L1	-2173.0	NR_151470	108167888.0		NR_151470		2610024D14Rik	-	ATP synthase subunit g, mitochondrial pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-161351144-4	chr1	161351055	161351255	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVL-int|LTR|ERVL	-44283.0	NM_009452	22164.0	Mm.4994	NM_009452	ENSMUSG00000026700	Tnfsf4	Ath-1|Ath1|CD134L|OX-40L|Ox40l|TXGP1|Tnlg2b|Txgp1l|gp34	tumor necrosis factor (ligand) superfamily, member 4	protein-coding	2.12728325564856	2.38287176421299	2.44050257371018	2.86903027275198	1.83903182018338	2.67047309117452	3.05260738831561	2.88349767377789	0.419242011633286	0.5948724525113	0.971009057416876
Merged-chr12-85943041-4	chr12	85942946	85943146	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347395, intron 28 of 32)	intron (NM_001347395, intron 28 of 32)	118096.0	NM_001081423	320244.0	Mm.132172	NM_177114	ENSMUSG00000012609	Ttll5	1700048H13Rik|2310009M18Rik|4930556H18Rik|AI428864|D630041K24Rik|R75373|Stamp|mKIAA0998	tubulin tyrosine ligase-like family, member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-105676289-3	chr2	105676173	105676373	+	844.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_013627, exon 1 of 13)	5' UTR (NM_013627, exon 1 of 13)	144.0	NM_001244202	18508.0	Mm.3608	NM_013627	ENSMUSG00000027168	Pax6	1500038E17Rik|AEY11|Dey|Gsfaey11|Pax-6|Sey	paired box 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81293843-2	chr10	81293743	81293943	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001293647, intron 1 of 17)	intron (NM_001293647, intron 1 of 17)	880.0	NM_001146687	18717.0	Mm.24222	NM_008844	ENSMUSG00000034902	Pip5k1c	AI115456|AI835305|Pip5kIgamma	phosphatidylinositol-4-phosphate 5-kinase, type 1 gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-53590449-4	chr5	53590374	53590574	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080927)	promoter-TSS (NM_001080927)	-12.0	NM_001359152	19664.0	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33529925-4	chr16	33529817	33530017	+	995.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083902, intron 1 of 11)	intron (NM_001083902, intron 1 of 11)	11322.0	NM_001083902	171286.0	Mm.35253	NM_134251	ENSMUSG00000035506	Slc12a8	CCC9|E330020C02Rik	solute carrier family 12 (potassium/chloride transporters), member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-72710855-3	chr1	72710769	72710969	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009084)	promoter-TSS (NM_009084)	-391.0	NM_009084	19981.0	Mm.21529	NM_009084	ENSMUSG00000046330	Rpl37a	-	ribosomal protein L37a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-80644677-2	chr18	80644577	80644777	+	556.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198429, intron 8 of 9)	intron (NM_198429, intron 8 of 9)	63496.0	NM_001164111	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-74843221-2	chr11	74843121	74843321	+	691.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_010813, exon 6 of 6)	exon (NM_010813, exon 6 of 6)	12297.0	NM_010813	17428.0	Mm.3759	NM_010813	ENSMUSG00000000282	Mnt	Rox|bHLHd3	max binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-24199966-4	chr16	24199859	24200059	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-117269.0	NR_155457	108168278.0	Mm.417246	NR_155457		Gm46545	-	predicted gene, 46545	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-125145387-4	chr4	125145297	125145497	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17516.0	NM_153159	230738.0	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	4.7472856308716	5.02645695744226	4.11993048235427	5.04226870403762	4.51803384499048	5.17875028708867	5.20365814872292	5.41009762041154	0.396553506766119	0.26632564909166	0.769151254995423
Merged-chr6-9428147-2	chr6	9428047	9428247	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17A2|LTR|ERVK	478128.0	NM_008751	18231.0	Mm.46954	NM_008751	ENSMUSG00000046178	Nxph1	C130005L03Rik	neurexophilin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-112913961-1	chr12	112913861	112914061	+	548.0	f0_balb.idr	exon (NM_010588, exon 15 of 26)	exon (NM_010588, exon 15 of 26)	6580.0	NR_105906	102465567.0		NR_105906	ENSMUSG00000098338	Mir6941	Gm27923|mmu-mir-6941	microRNA 6941	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-65737474-1	chr15	65737374	65737574	+	773.0	f0_balb.idr	Intergenic	Intergenic	-49546.0	NM_133766	76740.0	Mm.260647	NM_133766	ENSMUSG00000015002	Efr3a	A130089M23Rik|BB071175|C76891|C920006C10Rik|D030063F01Rik|mKIAA0143	EFR3 homolog A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-8513435-4	chr10	8513322	8513522	+	864.775024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177387, intron 1 of 7)	intron (NM_177387, intron 1 of 7)	5403.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44882811-3	chr9	44882723	44882923	+	876.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1549.0	NM_001081049	214162.0	Mm.2389	NM_001081049	ENSMUSG00000002028	Kmt2a	6430520K01|ALL-1|All1|Cxxc7|HRX|HTRX1|Mll|Mll1|mKIAA4050	lysine (K)-specific methyltransferase 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-37300852-4	chr1	37300768	37300968	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030266, intron 1 of 25)	intron (NM_030266, intron 1 of 25)	1030.0	NM_001290797	269180.0	Mm.5294	NM_030266	ENSMUSG00000026113	Inpp4a	107kDa|9630012D15|D130048C09Rik|R74740	inositol polyphosphate-4-phosphatase, type I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-63691919-3	chr18	63691830	63692030	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016792, intron 1 of 7)	CpG	429.0	NM_016792	53382.0	Mm.19169	NM_016792	ENSMUSG00000024583	Txnl1	32kDa|TRP32|Txnl	thioredoxin-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-24611566-2	chr18	24611466	24611666	+	756.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360909, intron 3 of 20)	intron (NM_001360909, intron 3 of 20)	7605.0	NM_021448	58523.0	Mm.25298	NM_021448	ENSMUSG00000024271	Elp2	AU023723|Epl2|StIP1|Statip1	elongator acetyltransferase complex subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131110937-4	chr1	131110832	131111032	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13089.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-20734576-4	chr14	20734480	20734680	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010811)	promoter-TSS (NM_010811)	-18.0	NM_010811	17423.0	Mm.4084	NM_010811	ENSMUSG00000039308	Ndst2	Mndns|NDST-2	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-78657798-4	chr1	78657709	78657909	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028817)	promoter-TSS (NM_028817)	-16.0	NM_001136222	74205.0	Mm.276016	NM_028817	ENSMUSG00000032883	Acsl3	2610510B12Rik|Acs3|C85929|Facl3|Pro2194	acyl-CoA synthetase long-chain family member 3	protein-coding	4.7302667152491	5.61749243318481	4.71718073133296	4.33418690541141	5.18760276721152	4.99487394753823	5.54911396110985	5.11836920075061	0.357668871156906	0.31067019925246	0.811838474799843
Merged-chr15-66686728-5	chr15	66686493	66686693	+	901.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009375, intron 11 of 47)	intron (NM_009375, intron 11 of 47)	15823.0	NM_009375	21819.0	Mm.441333	NM_009375	ENSMUSG00000053469	Tg	Tgn|cog	thyroglobulin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-128446279-4	chr6	128446178	128446378	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028593, intron 2 of 4)	intron (NR_028593, intron 2 of 4)	7521.0	NR_028593	791299.0	Mm.297516	NR_028592	ENSMUSG00000059659	Gm10069	-	predicted gene 10069	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-152740626-4	chr2	152740528	152740728	+	819.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4377.0	NM_001355113	15901.0	Mm.444	NM_010495	ENSMUSG00000042745	Id1	AI323524|D2Wsu140e|Idb1|bHLHb24	inhibitor of DNA binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-177441102-3	chr1	177441078	177441278	+	955.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1173.0	NM_001355099	30928.0	Mm.330700	NM_013915	ENSMUSG00000063659	Zbtb18	RP58|Zfp238|Znf238.|zfp-238	zinc finger and BTB domain containing 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-70853715-4	chr17	70853626	70853826	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164074)	promoter-TSS (NM_001164074)	-194.0	NM_001164074	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	-0.802593673557486	-0.793094718163527	-0.341243695287107	-0.798614554876962	-0.802002397560642	-0.791090896558683	-0.332078011335404	-0.79819523297655	0.040958530317021	0.989184000390448	1
Merged-chr8-71591393-3	chr8	71591303	71591503	+	740.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025396)	promoter-TSS (NM_025396)	-781.0	NM_025396	66171.0	Mm.282284	NM_025396	ENSMUSG00000031807	Pgls	1110030K05Rik|AI447866|Plgs	6-phosphogluconolactonase	protein-coding	-0.864257209751269	-0.683597218236398	-0.859594313999583	-0.715130177166343	-0.863828464477259	-0.679591609597519	-0.859087404383208	-0.586800478570689	0.618660920280492	0.820538092082231	1
Merged-chr5-115650195-2	chr5	115650095	115650295	+	858.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080808, intron 8 of 8)	intron (NM_001080808, intron 8 of 8)	3391.0	NR_151601	75665.0	Mm.233914	NM_001080808	ENSMUSG00000041609	Bicdl1	2210403N09Rik|BICDR-1|Ccdc64	BICD family like cargo adaptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-173878493-2	chr1	173878393	173878593	+	894.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001170853, intron 2 of 9)	intron (NM_001170853, intron 2 of 9)	1694.0	NM_001170853	100040462.0	Mm.463437	NM_001170853	ENSMUSG00000090272	Mndal	Gm2785|Ifi212	myeloid nuclear differentiation antigen like	protein-coding	1.84154431454528	1.42641450100803	1.73698261337698	1.94159408102729	1.95716141595224	1.4349417771351	2.5545285831179	1.54386259573561	0.596738291552528	0.561421562338246	0.960362415684079
Merged-chr13-5858984-4	chr13	5858856	5859056	+	905.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045891)	promoter-TSS (NR_045891)	-864.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-65381729-4	chr14	65381632	65381832	+	998.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199029, intron 1 of 9)	intron (NM_199029, intron 1 of 9)	23056.0	NM_199029	380912.0	Mm.270087	NM_199029	ENSMUSG00000034522	Zfp395	BC053701|Gm910	zinc finger protein 395	protein-coding	2.12151818071648	1.39547945774339	2.64168789163804	2.65575184051837	2.35697826226728	1.6793349507589	2.18621294060613	3.25580960656165	0.457704919730796	0.622265138410669	0.979781775676012
Merged-chr1-92910717-4	chr1	92910625	92910825	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_138577)	promoter-TSS (NR_138577)	-36.0	NR_138577	75995.0	Mm.46179	NR_138577	ENSMUSG00000097251	5033417F24Rik	6330419D11Rik	RIKEN cDNA 5033417F24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45054334-4	chr7	45054207	45054407	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022999, intron 6 of 6)	intron (NM_022999, intron 6 of 6)	-1426.0	NM_175022	233210.0	Mm.219137	NM_175022	ENSMUSG00000046574	Prr12	6720469B10|BC058674	proline rich 12	protein-coding	-0.39253435339459	-0.378402227544791	0.313526054148328	-0.386590968369088	-0.391648974600748	-0.377362822601887	0.220445039966957	-0.385966663243397	-0.283167236504405	0.915352399271479	1
Merged-chr4-150086484-2	chr4	150086384	150086584	+	910.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1019.0	NM_177366	269604.0	Mm.219307	NM_177366	ENSMUSG00000047875	Gpr157	F730108M23Rik	G protein-coupled receptor 157	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-93915630-1	chr16	93915530	93915730	+	637.666687	f0_c57.idr	Intergenic	B4|SINE|B4	13937.0	NM_001165925	56173.0	Mm.328716	NM_019500	ENSMUSG00000047109	Cldn14	AI851731	claudin 14	protein-coding	1.04852063906749	1.57096323760739	0.969445320956192	1.10258268685975	0.749513568813861	1.46810620887019	0.975733018146675	1.4680447832203	0.0464809378956237	0.972383899202294	0.998431161219273
Merged-chr15-97362443-2	chr15	97362343	97362543	+	779.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_172293, intron 4 of 5)	intron (NM_172293, intron 4 of 5)	-115156.0	NM_001164602	105827.0	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-84034686-2	chr12	84034586	84034786	+	724.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3693.0	NM_134247	171282.0	Mm.482217	NM_134247	ENSMUSG00000052392	Acot4	B430212I04Rik|PTE-Ib|Pte1b|Pte2b	acyl-CoA thioesterase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-90831209-3	chr16	90831132	90831332	+	697.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_133572, exon 1 of 6)	non-coding (NR_133572, exon 1 of 6)	373.0	NM_001316761	70967.0	Mm.253077	NM_027627	ENSMUSG00000039903	Eva1c	1700092M14Rik|4931408A02Rik|Fam176c	eva-1 homolog C (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105346622-3	chr8	105346518	105346718	+	850.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177699, intron 1 of 21)	intron (NM_177699, intron 1 of 21)	1352.0	NM_177699	234686.0	Mm.87724	NM_177699	ENSMUSG00000014778	Fhod1	BC017144|FHOS|FHOS1	formin homology 2 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-38686819-2	chr19	38686719	38686919	+	552.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019588, intron 3 of 31)	intron (NM_019588, intron 3 of 31)	132418.0	NM_021315	57753.0	Mm.86482	NM_021315	ENSMUSG00000024999	Noc3l	AF233884|Fad24	NOC3 like DNA replication regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-98165274-2	chr12	98165174	98165374	+	568.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	94185.0	NM_008079	14420.0	Mm.5120	NM_008079	ENSMUSG00000021003	Galc	2310068B06Rik|A930008M05Rik|AW212969|AW413532|Gacy|twi|twitcher	galactosylceramidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-35482446-1	chr3	35482346	35482546	+	548.0	f0_balb.idr	Intergenic	Intergenic	183717.0	NR_040748	625963.0	Mm.251506	NR_040748	ENSMUSG00000105662	Gm6639	-	predicted gene 6639	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-118459273-3	chr5	118459208	118459408	+	964.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C2|LTR|ERVK	-101411.0	NM_001347445	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116767910-2	chr11	116767806	116768006	+	1000.0	f0_balb.idr|f1_balb.idr	intron (NM_011371, intron 3 of 8)	intron (NM_011371, intron 3 of 8)	7601.0	NM_011371	20445.0	Mm.436887	NM_011371	ENSMUSG00000009588	St6galnac1	Siat7a	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 1	protein-coding	1.14623822820291	1.42981159963399	1.34560919965056	1.27539803292653	4.30619099618483	5.00816704926694	5.49299221858649	4.51314558528478	7.88299756650231	8.96188920812531e-13	3.04315320903078e-10
Merged-chr11-85182793-2	chr11	85182693	85182893	+	665.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	11697.0	NM_028589	73634.0	Mm.48850	NM_028589	ENSMUSG00000018479	1700125H20Rik	-	RIKEN cDNA 1700125H20 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-34180089-4	chr8	34179992	34180192	+	838.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13380.0	NR_105820	102465211.0		NR_105820	ENSMUSG00000098785	Mir6395	Gm27561|mmu-mir-6395	microRNA 6395	ncRNA	0.397288231471186	0.481425726821283	1.21683894576556	0.23519667732772	0.224461771676896	0.254378797245304	1.23297023441726	0.23651039812167	-0.306192427618924	0.870799055102044	1
Merged-chr2-68430841-4	chr2	68430722	68430922	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016866, intron 1 of 17)	intron (NM_016866, intron 1 of 17)	41159.0	NM_016866	53416.0	Mm.198414	NM_016866	ENSMUSG00000027030	Stk39	AW227544|AW556857|DCHT|RF005|Rnl5|SPAK	serine/threonine kinase 39	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-39451916-2	chr10	39451816	39452016	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001122892, intron 2 of 12)	intron (NM_001122892, intron 2 of 12)	82117.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-184613841-2	chr1	184613741	184613941	+	570.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-56150.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-35676372-2	chr2	35676272	35676472	+	704.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290637, intron 3 of 16)	intron (NM_001290637, intron 3 of 16)	-15622.0	NM_001001602	69601.0	Mm.29629	NM_001001602	ENSMUSG00000026883	Dab2ip	2310011D08Rik|AI480459|Aip1|mKIAA1743	disabled 2 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-25279342-3	chr2	25279243	25279443	+	888.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175300, intron 8 of 12)	intron (NM_175300, intron 8 of 12)	6877.0	NM_175300	99152.0	Mm.291624	NM_175300	ENSMUSG00000026965	Anapc2	9230107K09Rik|AL024279|Apc2|Emi4|Imi4|mKIAA1406	anaphase promoting complex subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-13256410-4	chr1	13256332	13256532	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008678, intron 2 of 22)	intron (NM_008678, intron 2 of 22)	115997.0	NM_001302702	17978.0	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	5.30878271833707	5.15956984910108	5.60276458378089	4.95045599414284	3.67868758146769	4.36819033558578	5.00465433642837	2.39073915874446	-1.37094469422233	0.00377853493498802	0.0538418790379885
Merged-chr16-35767600-7	chr16	35767290	35767490	+	804.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153550, intron 1 of 8)	B1_Mus1|SINE|Alu	1966.0	NM_153550	224132.0	Mm.24094	NM_153550	ENSMUSG00000022848	Dirc2	RCC4	disrupted in renal carcinoma 2 (human)	protein-coding	0.560051376943457	1.63547120820189	0.796649454824478	0.397305547516379	1.06745903203107	0.65480005600294	0.408418037779912	0.398827110225647	-1.30192857445873	0.435903233358072	0.907834077091723
Merged-chr8-123477323-2	chr8	123477223	123477423	+	823.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_054070)	promoter-TSS (NM_054070)	-539.0	NM_054070	114896.0	Mm.287475	NM_054070	ENSMUSG00000031967	Afg3l1	1700047G05Rik|3110061K15Rik	AFG3-like AAA ATPase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102517841-4	chr12	102517758	102517958	+	924.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37083.0	NM_007693	12652.0	Mm.4137	NM_007693	ENSMUSG00000021194	Chga	ChrA|cgA	chromogranin A	protein-coding	0.162218305886952	-0.180171510580741	0.248221320573055	-0.187690189094159	0.349761736342088	-0.179211135306007	-0.183485907659206	-0.187119937116872	-0.406786526121413	0.865870029271813	1
Merged-chr1-192727210-3	chr1	192727099	192727299	+	831.138916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144881, intron 5 of 11)	intron (NM_144881, intron 5 of 11)	44020.0	NM_144881	226861.0	Mm.145857	NM_144881	ENSMUSG00000037375	Hhat	2810432O22Rik|AI462858|AP-2CRE|Skn|Tg(TFAP2A-cre)1Will	hedgehog acyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-28168695-6	chr5	28168721	28168921	+	796.977783	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010134, intron 1 of 1)	intron (NM_010134, intron 1 of 1)	3125.0	NM_010134	13799.0	Mm.4298	NM_010134	ENSMUSG00000039095	En2	BB131122|En-2	engrailed 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76596363-2	chr15	76596263	76596463	+	566.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_073123)	TTS (NR_073123)	11228.0	NM_053193	94230.0	Mm.45141	NM_053193	ENSMUSG00000034022	Cpsf1	CPSF160	cleavage and polyadenylation specific factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-55390340-3	chr15	55390236	55390436	+	988.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181277, intron 14 of 47)	intron (NM_181277, intron 14 of 47)	82586.0	NM_181277	12818.0	Mm.297859	NM_181277	ENSMUSG00000022371	Col14a1	5730412L22Rik|AW108078	collagen, type XIV, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-93326616-2	chr10	93326511	93326711	+	608.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9208.0	NR_152777	102635316.0	Mm.404570	NR_152777	ENSMUSG00000111531	Gm32688	-	predicted gene, 32688	ncRNA	-0.12724546480415	-0.24641367763127	-0.250215577708123	0.0268448057476682	0.0949259414713731	0.2192876948195	-0.24937904080079	-0.252624280973043	1.14622234430655	0.620228913505597	1
Merged-chr14-20479950-4	chr14	20479859	20480059	+	953.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_009674, exon 1 of 13)	5' UTR (NM_009674, exon 1 of 13)	174.0	NM_001110794	11750.0	Mm.280231	NM_009674	ENSMUSG00000021814	Anxa7	AI265384|AI316497|Anx7|synexin	annexin A7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-45194141-1	chr2	45194041	45194241	+	600.0	f0_balb.idr	Intergenic	Intergenic	-76699.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-12287481-6	chr12	12287342	12287542	+	939.7777710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029758, intron 2 of 12)	intron (NM_029758, intron 2 of 12)	25303.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-45677689-1	chr9	45677589	45677789	+	606.0	f0_c57.idr	intron (NM_001081270, intron 8 of 32)	intron (NM_001081270, intron 8 of 32)	150949.0	NM_001081373	214552.0	Mm.260103	NM_172531	ENSMUSG00000043987	Cep164	AI450905|BC027092|D030051D21|mKIAA1052	centrosomal protein 164	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-17520852-4	chr6	17520760	17520960	+	970.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008591, intron 4 of 21)	intron (NM_008591, intron 4 of 21)	56903.0	NM_008591	17295.0	Mm.86844	NM_008591	ENSMUSG00000009376	Met	AI838057|HGF|HGFR|Par4|c-Met	met proto-oncogene	protein-coding	1.33188708621801	1.15386187362639	0.910756451548812	1.73786074515606	1.4582259608532	1.97939661974914	1.1291270388016	1.41139302148301	0.737121565245794	0.549990831345341	0.958882219733107
Merged-chr5-114926385-4	chr5	114926299	114926499	+	903.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359946, intron 1 of 4)	intron (NM_001359946, intron 1 of 4)	3159.0	NM_001359945	231655.0	Mm.95479	NM_145209	ENSMUSG00000041827	Oasl1	7530414C13Rik|oasl9	2'-5' oligoadenylate synthetase-like 1	protein-coding	2.60801247512255	1.20089029823658	1.16941897401347	2.16728029944227	2.42379684908215	2.21075758079171	1.17648764812549	2.70255917675038	0.666859140288329	0.560027091061346	0.960321604678676
Merged-chr9-66346688-2	chr9	66346588	66346788	+	786.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-3762.0	NM_145617	235439.0	Mm.244179	NM_145617	ENSMUSG00000038664	Herc1	2810449H11Rik|B230218H07|D130015N03Rik|tbl	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24141672-4	chr17	24141573	24141773	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011062)	promoter-TSS (NM_011062)	-79.0	NM_001080773	18607.0	Mm.10504	NM_011062	ENSMUSG00000024122	Pdpk1	Pdk1	3-phosphoinositide dependent protein kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-73547430-4	chr2	73547336	73547536	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-17949.0	NM_153138	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-4919012-4	chr2	4918902	4919102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010726)	promoter-TSS (NM_010726)	6.0	NM_010726	16922.0	Mm.391704	NM_010726	ENSMUSG00000026664	Phyh	AI256161|AI265699|Lnap1|PAHX	phytanoyl-CoA hydroxylase	protein-coding	4.10929138121428	3.82246934099093	3.84894250530839	3.31688440394994	3.16268243062614	4.14960812336734	4.7834163596931	4.23783091906359	0.535429320369938	0.288733517523722	0.794304053022689
Merged-chr7-64388911-3	chr7	64388814	64389014	+	893.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026483, exon 3 of 11)	exon (NM_026483, exon 3 of 11)	3322.0	NM_026483	67973.0	Mm.26973	NM_026483	ENSMUSG00000030521	Mphosph10	2810453H10Rik|5730405D16Rik|AI326008	M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-93917088-4	chr15	93916965	93917165	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045737, intron 2 of 3)	intron (NR_045737, intron 2 of 3)	10046.0	NR_045737	77248.0	Mm.410768	NR_045737	ENSMUSG00000116360	9430014N10Rik	-	RIKEN cDNA 9430014N10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35135284-5	chr17	35135171	35135371	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252468)	promoter-TSS (NM_001252468)	93.0	NM_057171	224727.0	Mm.203962	NM_057171	ENSMUSG00000024392	Bag6	2410045D21Rik|AA408914|BAG-6|Bat3|D17H6S52E|G3|Scythe	BCL2-associated athanogene 6	protein-coding	5.715348435213	5.36804164026917	5.34063456349628	4.63666075756485	5.6607684208303	5.21669865187216	5.91315613934231	5.35251968476799	0.278664613336944	0.370337314183033	0.863727598865104
Merged-chr14-101481381-4	chr14	101481290	101481490	+	838.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081278, intron 8 of 18)	HAL1|LINE|L1	127801.0	NM_001081278	210789.0	Mm.320639	NM_173380	ENSMUSG00000033083	Tbc1d4	5930406J04Rik|A930035N22|AV295684|As160	TBC1 domain family, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-92443443-2	chr5	92443343	92443543	+	857.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007644, exon 12 of 12)	3' UTR (NM_007644, exon 12 of 12)	-8244.0	NM_183392	269113.0	Mm.275289	NM_183392	ENSMUSG00000034826	Nup54	3110079L04Rik|54kDa	nucleoporin 54	protein-coding	-1.06749048699405	-1.18409811726534	-1.19455639931541	-1.20314714357788	-0.732344966823593	-1.18183176391733	-1.19218887349829	-1.20160940446224	1.4740915481595	0.659875114534777	1
Merged-chr4-122838610-4	chr4	122838518	122838718	+	961.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008917, intron 1 of 8)	L2b|LINE|L2	2391.0	NM_008917	19063.0	Mm.277719	NM_008917	ENSMUSG00000028657	Ppt1	9530043G02Rik|AA960502|C77813|CLN1|D4Ertd184e|INCL|PPT	palmitoyl-protein thioesterase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-94504783-2	chr16	94504683	94504883	+	687.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_007834, intron 4 of 7)	intron (NM_007834, intron 4 of 7)	21846.0	NM_007834	13185.0	Mm.7472	NM_007834	ENSMUSG00000022898	Dscr3	AW538125|Dcra	DSCR3 arrestin fold containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-155064267-2	chr1	155064167	155064367	+	799.666687	f1_balb.idr|f1_c57bl6.idr	intron (NR_151545, intron 6 of 6)	intron (NR_151545, intron 6 of 6)	18997.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-4297337-4	chr7	4297245	4297445	+	745.729187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23156.0	NM_008848	18729.0	Mm.326531	NM_008848		Pira6	12M1|Pira10|p91B	paired-Ig-like receptor A6	protein-coding	3.27719297987194	1.9857140575599	3.03478367918048	1.37656555801822	1.77605025532143	2.98738518605526	2.56623052641923	2.96380926061373	0.0121115777604366	0.989215060205817	0.998431161219273
Merged-chr2-156258278-3	chr2	156258199	156258399	+	987.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172674, intron 4 of 17)	B1_Mur4|SINE|Alu	-54174.0	NM_027585	70873.0	Mm.475234	NM_027585	ENSMUSG00000038085	Cnbd2	4921517L17Rik|5430421B09Rik|Cris	cyclic nucleotide binding domain containing 2	protein-coding	0.94575455556834	2.24652954068484	2.16137815695033	1.22765987600468	1.36337816973944	1.88758500374159	2.60130348040817	0.986599033833634	0.241725310215734	0.841951058309814	0.998431161219273
Merged-chr10-80705197-2	chr10	80705097	80705297	+	987.875	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_027829, exon 10 of 10)	3' UTR (NM_027829, exon 10 of 10)	2504.0	NM_027829	71564.0	Mm.35802	NM_027829	ENSMUSG00000055862	Izumo4	9030607L17Rik|AI550407	IZUMO family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-79663175-2	chr17	79663075	79663275	+	572.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_201361, intron 5 of 10)	intron (NM_201361, intron 5 of 10)	48275.0	NM_201361	381110.0	Mm.209801	NM_201361	ENSMUSG00000036368	Rmdn2	AW061290|Fam82a1|RMD-2|mRMD-2	regulator of microtubule dynamics 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19715705-4	chr7	19715572	19715772	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016871)	promoter-TSS (NM_016871)	-243.0	NM_016871	53333.0	Mm.61682	NM_016871	ENSMUSG00000002984	Tomm40	AW539759|Mom35|Tom40	translocase of outer mitochondrial membrane 40	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-9517412-2	chr18	9517347	9517547	+	717.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-67293.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	0.218569039216086	0.618475769903637	0.23407324878982	0.405148018582317	0.914331789120973	0.243229355326633	1.0535005183334	0.229286618304032	1.83192272337683	0.345761288572569	1
Merged-chr3-127797465-1	chr3	127797365	127797565	+	723.0	f1_c57bl6.idr	3' UTR (NM_145133, exon 3 of 3)	3' UTR (NM_145133, exon 3 of 3)	6808.0	NM_001356430	211550.0	Mm.31852	NM_145133	ENSMUSG00000046688	Tifa	T2bp	TRAF-interacting protein with forkhead-associated domain	protein-coding	0.510305718785373	0.615051201317998	0.818971117400403	0.256846024898988	0.250057193000806	0.269292851830202	0.830046215893031	0.420805561396624	-0.628309040409783	0.732264185799817	1
Merged-chr13-104309289-2	chr13	104309189	104309389	+	570.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_136938, intron 4 of 26)	RLTR28|LTR|ERVL	21454.0	NM_001081020	108154.0	Mm.208125	NM_175496	ENSMUSG00000046169	Adamts6	A930019D11Rik|ADAM-TS6|b2b1879.1Clo|b2b2029Clo|b2b2182Clo|b2b2187.1Clo|b2b2228Clo	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-80922995-2	chr12	80922895	80923095	+	646.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_033786)	TTS (NR_033786)	1452.0	NR_033786	67340.0	Mm.386790	NR_033786	ENSMUSG00000101912	1700052I22Rik	-	RIKEN cDNA 1700052I22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19217719-4	chr7	19217624	19217824	+	973.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175668, intron 1 of 1)	ID4_|SINE|ID	5186.0	NM_175668	319197.0	Mm.135984	NM_175668	ENSMUSG00000044317	Gpr4	-	G protein-coupled receptor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-46149815-2	chr9	46149715	46149915	+	544.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027498, intron 3 of 24)	intron (NM_027498, intron 3 of 24)	-78815.0	NM_009692	11806.0	Mm.26743	NM_009692	ENSMUSG00000032083	Apoa1	Alp-1|Apoa-1|Brp-14|Ltw-1|Lvtw-1|Sep-1|Sep-2|Sep2|apo-AI|apoA-I	apolipoprotein A-I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-114701050-2	chr5	114700959	114701159	+	723.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-6720.0	NM_029992	77832.0	Mm.239698	NM_029992	ENSMUSG00000002486	Tchp	A930031F18Rik|AV279199	trichoplein, keratin filament binding	protein-coding	1.72164867018929	1.75455108001117	1.06862896200107	0.820573482145353	0.79929676060607	1.88630668182465	1.91276807934055	0.823151426575621	0.228903603628854	0.87053769401756	0.998431161219273
Merged-chr19-4058776-4	chr19	4058661	4058861	+	858.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001362043, exon 2 of 6)	exon (NM_001362043, exon 2 of 6)	686.0	NM_144869	225884.0	Mm.440201	NM_144869	ENSMUSG00000058216	Gstp3	-	glutathione S-transferase pi 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-148444016-2	chr6	148443916	148444116	+	832.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001347518, exon 1 of 19)	exon (NM_001347518, exon 1 of 19)	336.0	NM_198967	387314.0	Mm.137858	NM_198967	ENSMUSG00000030306	Tmtc1	Arg99|BC023818	transmembrane and tetratricopeptide repeat containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-81986720-3	chr6	81986628	81986828	+	991.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-20779.0	NM_026490	56284.0	Mm.276293	NM_026490	ENSMUSG00000030045	Mrpl19	9030416F12Rik|9130412E02Rik|D6Ertd157e|MRP-L15|RLX1|Rpml15	mitochondrial ribosomal protein L19	protein-coding	2.36493313883729	2.79752861743978	3.80574327665964	2.73740991998573	2.71616616951772	2.16121481409815	3.21910090951782	2.75178401550699	-0.510445964216295	0.484179912137606	0.931207887927275
Merged-chr4-134616433-4	chr4	134616331	134616531	+	792.366699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207237, intron 2 of 11)	intron (NM_207237, intron 2 of 11)	-48580.0	NR_105829	102465216.0		NR_105829	ENSMUSG00000099289	Mir6403	Gm27992|mmu-mir-6403	microRNA 6403	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-87578427-4	chr11	87578321	87578521	+	909.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361936)	promoter-TSS (NM_001361936)	32.0	NM_001284398	18952.0	Mm.2214	NM_011129	ENSMUSG00000020486	Sept4	ARTS|Bh5|Pnutl2	septin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91482033-2	chr16	91481933	91482133	+	811.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	-3182.0	NM_010508	15975.0	Mm.502	NM_010508	ENSMUSG00000022967	Ifnar1	Ifar|Ifnar|Ifrc|Infar	interferon (alpha and beta) receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-5850367-3	chr13	5850247	5850447	+	666.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7745.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-24592593-2	chr16	24592493	24592693	+	707.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 4 of 12)	intron (NM_178665, intron 4 of 12)	63279.0	NR_038091	624582.0	Mm.439775	NR_038091		Morf4l1-ps1	A730098P11Rik	mortality factor 4 like 1, pseudogene 1	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-84131651-4	chr15	84131538	84131738	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8463.0	NM_029427	75772.0	Mm.159565	NM_029427	ENSMUSG00000018868	Pnpla5	4833426H19Rik|GS2L	patatin-like phospholipase domain containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-8869773-2	chr17	8869673	8869873	+	846.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347321, intron 1 of 21)	intron (NM_001347321, intron 1 of 21)	19788.0	NM_001347321	23984.0	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-27860014-3	chr7	27859902	27860102	+	771.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024726)	promoter-TSS (NM_001024726)	-583.0	NM_001024726	545938.0	Mm.458180	NM_001024726	ENSMUSG00000020420	Zfp607a	4732475C15Rik|Zfp607	zinc finger protein 607A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-125371045-2	chr1	125371012	125371212	+	949.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Charlie18a|DNA|hAT-Charlie	64615.0	NM_001205386	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	-2.18375600819439	-2.15556918946382	-2.16409311609999	-2.17109492323169	-2.18177734563694	-2.01960173909294	-2.16216348594872	-2.16984160310277	0.759018020146679	0.829933115115583	1
Merged-chr9-22066561-2	chr9	22066461	22066661	+	671.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177318, intron 2 of 8)	intron (NM_177318, intron 2 of 8)	-4441.0	NR_040406	100503652.0	Mm.439941	NR_040406	ENSMUSG00000096981	Gm16845	-	predicted gene, 16845	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-161528339-4	chr1	161528245	161528445	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33688.0	NM_183391	240873.0	Mm.276823	NM_183391	ENSMUSG00000066755	Tnfsf18	Gitrl|Tnlg2a	tumor necrosis factor (ligand) superfamily, member 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126802892-6	chr8	126802796	126802996	+	767.211121	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46124.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-99019319-2	chr14	99019219	99019419	+	805.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26817.0	NM_175245	76789.0	Mm.38912	NM_175245	ENSMUSG00000033186	Mzt1	2410129H14Rik|AI120158|Mozart1	mitotic spindle organizing protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-86666965-2	chr4	86666871	86667071	+	582.0	f0_balb.idr|f1_balb.idr	intron (NM_007408, intron 3 of 7)	B1F|SINE|Alu	3088.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-88357166-4	chr10	88357058	88357258	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027878)	promoter-TSS (NM_027878)	-83.0	NM_027878	71712.0	Mm.35450	NM_027878	ENSMUSG00000020057	Dram1	1200002N14Rik|Dram	DNA-damage regulated autophagy modulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-56464527-2	chr18	56464427	56464627	+	855.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026240, intron 1 of 13)	intron (NM_026240, intron 1 of 13)	32395.0	NM_026240	107022.0	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|Gramd2b|NS3TP2	GRAM domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-86185928-6	chr15	86185840	86186040	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_145475, exon 1 of 13)	5' UTR (NM_145475, exon 1 of 13)	201.0	NM_145475	223753.0	Mm.222685	NM_145475	ENSMUSG00000035891	Cerk	AI848610|D330016D08Rik|mKIAA1646	ceramide kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-82505876-2	chr18	82505776	82505976	+	726.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025245, intron 2 of 3)	MLT1B|LTR|ERVL-MaLR	30753.0	NM_010777	17196.0	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-150259355-4	chr5	150259274	150259474	+	776.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172887)	promoter-TSS (NM_172887)	-556.0	NM_172887	320365.0	Mm.216590	NM_172887	ENSMUSG00000056602	Fry	13CDNA73|9330186A19Rik|AF346502|AI462658|C87180|D930046M03|cg003|mKIAA4143	FRY microtubule binding protein	protein-coding	1.21896039836306	0.702300195360326	1.34431270005667	1.67549059151087	0.841045899557921	0.705136486276664	0.692412286405008	1.51451858678806	-1.16110500033679	0.44018479235062	0.909387391506812
Merged-chr7-80845569-2	chr7	80845469	80845669	+	752.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16539.0	NM_009553	22691.0	Mm.358645	NM_009553	ENSMUSG00000038797	Zscan2	Zfp-29|Zfp29	zinc finger and SCAN domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-112473823-5	chr13	112473807	112474007	+	860.1333619999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010560, intron 2 of 16)	intron (NM_010560, intron 2 of 16)	9837.0	NM_010560	16195.0	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-28543943-2	chr2	28543843	28544043	+	786.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145836, intron 5 of 17)	intron (NM_001145836, intron 5 of 17)	10479.0	NM_001145836	19730.0	Mm.5236	NM_009058	ENSMUSG00000026821	Ralgds	Gnds|Rgds|mKIAA1308	ral guanine nucleotide dissociation stimulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-9099342-4	chr4	9099246	9099446	+	938.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-169947.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-25288850-2	chr17	25288744	25288944	+	840.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-9550.0	NM_178372	328780.0	Mm.127166	NM_178372	ENSMUSG00000056399	Prss34	C130091P12|Mcp11|mMcp-11	protease, serine 34	protein-coding	-1.70135544069701	-1.81276568865923	-1.82173030446212	-1.8290941067965	-1.84032881314662	-1.81082301901796	-1.81970091194313	-1.68672165733678	0.0376840119903866	0.991491645451152	1
Merged-chr1-16667852-1	chr1	16667752	16667952	+	554.0	f0_c57.idr	intron (NM_027415, intron 2 of 2)	Lx9|LINE|L1	2661.0	NM_026392	70397.0	Mm.194225	NM_026392	ENSMUSG00000025940	Tmem70	1110020A09Rik|2210416J16Rik	transmembrane protein 70	protein-coding	2.43797284149436	2.60598408237557	2.37917969471189	3.30395818130523	2.4582293319376	2.62508310430656	2.39768916715026	3.32009603995461	0.0350567921764307	0.9623619500272	0.998431161219273
Merged-chr3-8964990-4	chr3	8964907	8965107	+	952.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001025261)	promoter-TSS (NM_001025261)	-861.0	NM_001025261	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43957385-4	chr4	43957291	43957491	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027450)	promoter-TSS (NM_027450)	-311.0	NM_027450	384009.0	Mm.22213	NM_027450	ENSMUSG00000028480	Glipr2	5730414A08Rik|C77180|GAPR-1	GLI pathogenesis-related 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-102982671-5	chr14	102982573	102982773	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_039592)	promoter-TSS (NR_039592)	-36.0	NM_177715	239217.0	Mm.246466	NM_177715	ENSMUSG00000098557	Kctd12	AU046135|AW538430|Pfet1|Pfetin	potassium channel tetramerisation domain containing 12	protein-coding	6.90963641324947	7.44742239345137	7.53596484457728	7.27312009212225	7.59541328104414	7.96746554203271	8.35579515886455	7.75102980435359	0.662303737032603	0.000322310130870125	0.00774798689943038
Merged-chr17-25919118-3	chr17	25919060	25919260	+	581.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139154, intron 2 of 6)	CpG	554.0	NM_139154	224624.0	Mm.328872	NM_139154	ENSMUSG00000025730	Rab40c	RAR3	Rab40C, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-35892431-2	chr1	35892331	35892531	+	625.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-175969.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-11475331-4	chr8	11475211	11475411	+	898.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011227, intron 1 of 1)	intron (NM_011227, intron 1 of 1)	-2618.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-89364574-3	chr6	89364472	89364672	+	938.0277710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1959.0	NM_008881	18844.0	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-48690804-4	chr2	48690697	48690897	+	979.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-123312.0	NM_007396	11480.0	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-137658762-1	chr5	137658662	137658862	+	545.0	f1_c57bl6.idr	intron (NM_178162, intron 6 of 11)	B2_Mm2|SINE|B2	-13048.0	NM_010571	16369.0	Mm.24486	NM_010571	ENSMUSG00000047182	Irs3	AA408304	insulin receptor substrate 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-140170643-4	chr2	140170530	140170730	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081090)	promoter-TSS (NM_001081090)	-16.0	NM_027093	69487.0	Mm.287921	NM_027093	ENSMUSG00000027384	Ndufaf5	2310003L22Rik	NADH dehydrogenase (ubiquinone) complex I, assembly factor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-6008038-6	chr17	6007950	6008150	+	824.972229	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001113351, exon 7 of 25)	exon (NM_001113351, exon 7 of 25)	470.0	NM_001290698	20975.0	Mm.236068	NM_011523	ENSMUSG00000023805	Synj2	AI481647|SJ2|mKIAA0348	synaptojanin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-80553397-4	chr17	80553296	80553496	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360144, intron 3 of 9)	intron (NM_001360144, intron 3 of 9)	10438.0	NM_001033443	381113.0	Mm.329216	NM_001033443	ENSMUSG00000033966	Cdkl4	AU067824|Gm942	cyclin-dependent kinase-like 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-60742853-2	chr18	60742753	60742953	+	690.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001348146, intron 1 of 6)	intron (NM_001348146, intron 1 of 6)	3893.0	NM_001348101	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	0.233163984322768	0.0651896065841747	1.66511590964844	0.0448353499371688	0.410842726253732	0.0677108378331757	0.304190055869728	0.0464192283196197	-2.46479732234366	0.19402659595852	0.674111321904534
Merged-chr3-32427836-1	chr3	32427736	32427936	+	720.0	f0_balb.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-8315.0	NM_008839	18706.0	Mm.260521	NM_008839	ENSMUSG00000027665	Pik3ca	6330412C24Rik|caPI3K|p110|p110alpha	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-107473731-2	chr11	107473631	107473831	+	767.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-3011.0	NM_145823	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-62816379-2	chr9	62816279	62816479	+	888.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4731.0	NM_010193	14155.0	Mm.24069	NM_010193	ENSMUSG00000032244	Fem1b	mKIAA0396	feminization 1 homolog b (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-71996127-4	chr11	71996006	71996206	+	858.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41403.0	NM_053245	114230.0	Mm.95707	NM_053245	ENSMUSG00000040554	Aipl1	A930007I01Rik	aryl hydrocarbon receptor-interacting protein-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-152105511-4	chr2	152105408	152105608	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029688)	promoter-TSS (NM_029688)	-16.0	NM_029688	76650.0	Mm.218639	NM_029688	ENSMUSG00000032802	Srxn1	1700127B04Rik|AI854065|AW488194|Npn3|Srx|Srx1|TX01	sulfiredoxin 1 homolog (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-154678012-3	chr2	154677922	154678122	+	859.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029362, intron 1 of 4)	intron (NM_029362, intron 1 of 4)	20996.0	NM_029362	75608.0	Mm.262480	NM_029362	ENSMUSG00000038467	Chmp4b	2010012F05Rik|C76846|Snf7-2	charged multivesicular body protein 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-50415475-4	chr17	50415393	50415593	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16E1|LTR|ERVL	-94054.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-21912601-2	chr16	21912501	21912701	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172821, intron 8 of 12)	Lx8b|LINE|L1	20632.0	NM_172821	71751.0	Mm.420837	NM_172821	ENSMUSG00000033618	Map3k13	C130026N12Rik|LZK	mitogen-activated protein kinase kinase kinase 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133209566-4	chr4	133209458	133209658	+	841.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008154, exon 2 of 2)	3' UTR (NM_008154, exon 2 of 2)	2978.0	NM_008154	14748.0	Mm.4721	NM_008154	ENSMUSG00000049649	Gpr3	Gpcr20|Gpcr21|Gpcr3	G-protein coupled receptor 3	protein-coding	2.05545774749538	2.13713929759188	2.56505838143351	2.28263209101974	2.47993597106068	2.1517266440156	2.76833375455169	2.40605715442352	0.460245339291181	0.56725646676878	0.962562732139494
Merged-chr11-102309105-4	chr11	102308992	102309192	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001044383, intron 12 of 19)	CpG	8195.0	NM_001044383	21429.0	Mm.2845	NM_011551	ENSMUSG00000020923	Ubtf	A930005G04Rik|NOR-90|Tcfubf|UBF|UBF-1|UBF1	upstream binding transcription factor, RNA polymerase I	protein-coding	5.27754728402506	5.65041288218478	5.64367058119561	5.43978882788278	4.76604981299269	5.04075336810608	3.4099953461987	5.12081152202854	-0.914641501813852	0.0113521001195703	0.118919526107047
Merged-chr6-148609109-4	chr6	148608969	148609169	+	945.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045867, exon 3 of 3)	non-coding (NR_045867, exon 3 of 3)	5240.0	NR_045867	622319.0	Mm.491049	NM_001037912	ENSMUSG00000070995	Gm6313	EG622319	predicted gene 6313	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-43673787-4	chr19	43673697	43673897	+	791.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145156, intron 1 of 3)	intron (NM_145156, intron 1 of 3)	1084.0	NM_145156	246696.0	Mm.23827	NM_145156	ENSMUSG00000040414	Slc25a28	Mfrn2|Mrs3/4	solute carrier family 25, member 28	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123128594-4	chr5	123128530	123128730	+	984.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175092, intron 2 of 4)	intron (NM_175092, intron 2 of 4)	3999.0	NM_175092	23912.0	Mm.253876	NM_175092	ENSMUSG00000029449	Rhof	AI845056|AV026554|Arhf|Ifld1|Rif	ras homolog family member F (in filopodia)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-72041937-4	chr11	72041823	72042023	+	822.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144526)	promoter-TSS (NM_144526)	-579.0	NM_144526	109212.0	Mm.33118	NM_144526	ENSMUSG00000020808	Pimreg	2610008F03Rik|6720460F02Rik|AI115087|CATS|Fam64a	PICALM interacting mitotic regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-53845615-1	chr18	53845515	53845715	+	694.666687	f0_balb.idr	Intergenic	Intergenic	-16498.0	NM_152809	70425.0	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56461738-2	chr17	56461638	56461838	+	743.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252455, intron 1 of 27)	intron (NM_001252455, intron 1 of 27)	483.0	NM_001252456	19280.0	Mm.258771	NM_011218	ENSMUSG00000013236	Ptprs	AL022616|PTP|PTP-NU3|PTPNU-3|PTPsigma|Ptpt9|R-PTP-S|RPTPsigma	protein tyrosine phosphatase, receptor type, S	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43038342-2	chr4	43038242	43038442	+	631.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045567, intron 1 of 7)	PB1D10|SINE|Alu	1959.0	NM_001253353	230088.0	Mm.260162	NM_172691	ENSMUSG00000036002	Fam214b	B230312A22Rik	family with sequence similarity 214, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-36550042-2	chr16	36549942	36550142	+	667.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_013803, intron 1 of 6)	intron (NM_013803, intron 1 of 6)	12092.0	NM_013803	12374.0	Mm.103619	NM_013803	ENSMUSG00000051980	Casr	CaR|Gprc2a	calcium-sensing receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90487537-3	chr2	90487366	90487566	+	937.015869	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	(CA)n|Simple_repeat|Simple_repeat	-8292.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128855607-4	chr2	128855512	128855712	+	949.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8320.0	NM_024237	70370.0	Mm.5107	NM_024237	ENSMUSG00000027386	Fbln7	1600015H20Rik|AI464334|TM14	fibulin 7	protein-coding	3.79278612962053	2.87246202681492	3.40765857629587	4.34572431760033	4.21651458657463	3.75160051919692	4.06958513002913	4.64281198276672	0.674685111648303	0.182189637619291	0.656035795965261
Merged-chr5-99378569-2	chr5	99378469	99378669	+	739.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 2 of 3)	intron (NR_030692, intron 2 of 3)	-125642.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-79318571-2	chr12	79318471	79318671	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 5 of 10)	intron (NM_009014, intron 5 of 10)	21220.0	NM_001252562	19363.0	Mm.341756	NM_009014	ENSMUSG00000059060	Rad51b	AI553500|R51H2|Rad51l1|mREC2	RAD51 paralog B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-50033989-2	chr8	50033889	50034089	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-334123.0	NR_046067	100039954.0	Mm.400419	NR_046067	ENSMUSG00000110281	Gm2516	-	predicted gene 2516	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-35381244-2	chr6	35381144	35381344	+	645.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50398.0	NR_040526	73409.0	Mm.69443	NR_040526	ENSMUSG00000107341	1700065J11Rik	-	RIKEN cDNA 1700065J11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-63662840-2	chr4	63662740	63662940	+	691.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28419.0	NR_151544	102632940.0	Mm.399154	NR_151544	ENSMUSG00000086817	Gm11482	-	predicted gene 11482	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-87033605-4	chr3	87033497	87033697	+	930.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34257.0	NM_007639	12479.0	Mm.1894	NM_007639	ENSMUSG00000028076	Cd1d1	AI747460|CD1.1|Cd1a|Cd1d|Ly-38	CD1d1 antigen	protein-coding	1.25598033761578	0.602192931535935	0.393539911094339	0.559316935512382	0.663806420103569	0.92081089972044	0.583441347903539	0.388500983250797	-0.586891483539045	0.72316668975729	1
Merged-chr14-52257889-4	chr14	52257773	52257973	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-20301.0	NM_201637	67772.0	Mm.289934	NM_201637	ENSMUSG00000053754	Chd8	5830451P18Rik|AU015341|Duplin|HELSNF1|mKIAA1564	chromodomain helicase DNA binding protein 8	protein-coding	7.23614320697168	7.38216909146381	7.66917313515208	7.27261402417123	7.05260429318866	7.45747754942043	7.76232283833739	7.08861689763086	-0.0341345883616263	0.853152126081157	0.998431161219273
Merged-chr4-11077152-3	chr4	11077069	11077269	+	873.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001085493)	promoter-TSS (NM_001085493)	-964.0	NM_001085493	76947.0	Mm.275265	NM_001085493	ENSMUSG00000050323	Ndufaf6	2310030N02Rik	NADH dehydrogenase (ubiquinone) complex I, assembly factor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-117042703-4	chr4	117042608	117042808	+	929.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111277, intron 3 of 11)	intron (NM_001111277, intron 3 of 11)	23306.0	NM_001111277	108067.0	Mm.34612	NM_175135	ENSMUSG00000028683	Eif2b3	1190002P15Rik	eukaryotic translation initiation factor 2B, subunit 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-94564584-4	chr11	94564460	94564660	+	872.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007689)	promoter-TSS (NM_007689)	-487.0	NM_007689	12643.0	Mm.440523	NM_007689	ENSMUSG00000039084	Chad	SLRR4A	chondroadherin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-45677415-4	chr14	45677290	45677490	+	989.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19247.0	NM_001042719	114874.0	Mm.121918	NM_176845	ENSMUSG00000037697	Ddhd1	Mir5131|PA-PLA1	DDHD domain containing 1	protein-coding	3.65441436969158	3.56351483974366	3.01930826885161	4.15802460601457	5.74662295387438	6.15498410080287	5.8131897539707	6.1497091139423	2.76337817119524	3.82964872989242e-15	2.46150672113835e-12
Merged-chr17-69396415-4	chr17	69396337	69396537	+	972.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12633.0	NM_009547	22666.0	Mm.29434	NM_009547	ENSMUSG00000049672	Zbtb14	ZF5|Zfp161|b2b1982Clo	zinc finger and BTB domain containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153530051-2	chr2	153529951	153530151	+	633.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001134300)	promoter-TSS (NM_001134300)	-80.0	NM_001134300	329540.0	Mm.50600	NM_001001986	ENSMUSG00000061411	Nol4l	4931410H15|8430427H17Rik|AI429157|Gm1636	nucleolar protein 4-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-50299232-4	chr16	50299117	50299317	+	928.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027444, intron 3 of 16)	intron (NM_027444, intron 3 of 16)	133172.0	NM_027444	70508.0	Mm.28940	NM_027444	ENSMUSG00000022641	Bbx	5530401J07Rik|5730403O13Rik	bobby sox HMG box containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-108771246-2	chr3	108771146	108771346	+	587.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_177859, intron 6 of 11)	intron (NM_177859, intron 6 of 11)	31588.0	NM_177859	329738.0	Mm.72322	NM_177859	ENSMUSG00000049565	Aknad1	4921525H12Rik	AKNA domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-104439825-2	chr11	104439725	104439925	+	578.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359634, intron 2 of 14)	intron (NM_001359634, intron 2 of 14)	2466.0	NM_001081045	76719.0	Mm.136418	NM_001081045	ENSMUSG00000018412	Kansl1	1700081L11Rik|9430041J06Rik|mKIAA1267	KAT8 regulatory NSL complex subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-91636198-4	chr13	91636094	91636294	+	999.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360776, intron 4 of 15)	T-rich|Low_complexity|Low_complexity	-105327.0	NM_028790	74156.0	Mm.275963	NM_028790	ENSMUSG00000021620	Acot12	1300004O04Rik|4930449F15Rik|AV027244|Cach|mCACH-1	acyl-CoA thioesterase 12	protein-coding	5.4630401716308	6.1002077762789	5.45079960697208	5.92024091870729	5.47859382587209	6.86984760288567	6.5429710999033	5.14494754246568	0.462603122692709	0.176607577441811	0.646411749282139
Merged-chr1-128359716-4	chr1	128359618	128359818	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001313695)	promoter-TSS (NM_001313695)	-13.0	NM_008567	17219.0	Mm.4933	NM_008567	ENSMUSG00000026355	Mcm6	ASP-l1|D1Wsu22e|Mcmd6	minichromosome maintenance complex component 6	protein-coding	6.35997529395441	6.28535607335854	6.58353406166618	6.15861305014466	6.20599006843318	6.13726294950755	5.47854414531854	5.68411608241621	-0.484436876665963	0.0426713486175258	0.29605098730517
Merged-chr11-117725117-4	chr11	117725014	117725214	+	871.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198022, intron 5 of 21)	intron (NM_198022, intron 5 of 21)	54534.0	NR_154387	217353.0	Mm.286963	NM_145439	ENSMUSG00000025572	Tmc6	D11Ertd204e|EVER1	transmembrane channel-like gene family 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102426530-4	chr12	102426435	102426635	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011175, intron 1 of 13)	intron (NM_011175, intron 1 of 13)	13278.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	5.7893826927991	6.29251869463676	6.23544963180698	6.70989800082126	6.81283119046928	6.54631970459763	6.32686499496246	6.79157324269948	0.372146442208757	0.106164790751784	0.508286176951278
Merged-chr14-63118703-2	chr14	63118603	63118803	+	902.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F1|SINE|Alu	-3759.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-160792316-3	chr1	160792138	160792338	+	935.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013862, intron 1 of 20)	CpG	700.0	NM_013862	29809.0	Mm.25833	NM_013862	ENSMUSG00000026721	Rabgap1l	5830411O09Rik|8430421H08Rik|9630005B12Rik|AW049894|HHL|Hh1|mKIAA0471	RAB GTPase activating protein 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80721685-2	chr7	80721585	80721785	+	618.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_016721, intron 35 of 37)	L1MC4a|LINE|L1	-32808.0	NM_173863	70461.0	Mm.392175	NM_173863	ENSMUSG00000030527	Crtc3	2610312F20Rik|6332415K15Rik|AI429792|BC011210|TORC3	CREB regulated transcription coactivator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3908776-2	chr12	3908676	3908876	+	602.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001271753, exon 23 of 23)	3' UTR (NM_001271753, exon 23 of 23)	17032.0	NM_153743	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-57502434-4	chr16	57502317	57502517	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	-46825.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105254284-4	chr8	105254178	105254378	+	989.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001271915, exon 1 of 1)	exon (NM_001271915, exon 1 of 1)	875.0	NM_001271915	97440.0	Mm.489600	NM_178879	ENSMUSG00000069920	B3gnt9	3-Gn-T9|B3gnt9-ps|BGnT-9|C76565|C76566|beta-1|beta3Gn-T9	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69901017-4	chr11	69900936	69901136	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001316696)	promoter-TSS (NM_001316696)	-50.0	NM_027419	70419.0	Mm.272859	NM_027419	ENSMUSG00000018570	2810408A11Rik	1700019L01Rik|4930470J18Rik	RIKEN cDNA 2810408A11 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34188229-2	chr17	34188129	34188329	+	933.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013585)	promoter-TSS (NM_013585)	673.0	NM_013683	21354.0	Mm.482076	NM_013683	ENSMUSG00000037321	Tap1	ABC17|APT1|Abcb2|Ham-1|Ham1|MTP1|PSF1|RING4|TAP|Tap-1|Y3	transporter 1, ATP-binding cassette, sub-family B (MDR/TAP)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-153797763-1	chr3	153797663	153797863	+	855.3333130000001	f0_balb.idr	Intergenic	Intergenic	-5676.0	NR_045801	70594.0	Mm.491050	NR_045801	ENSMUSG00000062046	5730460C07Rik	-	RIKEN cDNA 5730460C07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152582504-2	chr1	152582404	152582604	+	833.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 3 of 17)	intron (NM_016846, intron 3 of 17)	42713.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6084442-2	chr19	6084342	6084542	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026410)	promoter-TSS (NM_026410)	533.0	NM_001356994	81909.0	Mm.289471	NM_024231	ENSMUSG00000024792	Zfpl1	-	zinc finger like protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-84919038-2	chr10	84918938	84919138	+	776.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013441, intron 1 of 8)	intron (NM_001013441, intron 1 of 8)	1425.0	NM_183172	237422.0	Mm.18936	NM_183172	ENSMUSG00000035620	Ric8b	BC051080|Ric-8|Ric-8b	RIC8 guanine nucleotide exchange factor B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-69938499-4	chr8	69938395	69938595	+	850.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286450, intron 2 of 12)	intron (NM_001286450, intron 2 of 12)	35888.0	NM_001113346	234366.0	Mm.270044	NM_145596	ENSMUSG00000036180	Gatad2a	1110066C11Rik|BC031407|C80248	GATA zinc finger domain containing 2A	protein-coding	0.392358857166939	0.748690670443885	0.316664076315823	0.139702930800567	0.133502773517262	0.151072442214103	0.321431212579235	0.666953116860113	-0.552255079983364	0.773349096152462	1
Merged-chr11-11669235-2	chr11	11669135	11669335	+	934.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16690.0	NM_009578	22778.0	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-126556493-2	chr4	126556393	126556593	+	685.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175554)	promoter-TSS (NM_175554)	-487.0	NM_175554	269582.0	Mm.243962	NM_175554	ENSMUSG00000042489	Clspn	B130025E01|C85083|E130314M08Rik	claspin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-35176081-2	chr2	35175981	35176181	+	882.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_012018, intron 41 of 43)	intron (NM_012018, intron 41 of 43)	25039.0	NM_026697	68365.0	Mm.198264	NM_026697	ENSMUSG00000026878	Rab14	0610030G24Rik|2810475J17Rik|A830021G03Rik|AI314285|AI649155|D030017L14Rik	RAB14, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101583393-3	chr15	101583294	101583494	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5178.0	NR_002868	432985.0	Mm.491078	NR_002868		Gm5476	EG432985|Kb17P	type II keratin Kb17P pseudogene	pseudo	2.14038628666158	1.48668741424257	3.38915390196832	2.27361442484943	2.55125728625471	2.4598485185328	4.16755387286203	3.08374755410629	1.27700305238088	0.122932201661171	0.549697945781172
Merged-chr10-127591148-4	chr10	127591048	127591248	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 11 of 88)	intron (NM_008512, intron 11 of 88)	30000.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-81806980-4	chr8	81806881	81807081	+	989.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024617, intron 7 of 24)	intron (NM_001024617, intron 7 of 24)	464419.0	NM_001297593	234515.0	Mm.324468	NM_001024617	ENSMUSG00000037940	Inpp4b	E130107I17Rik	inositol polyphosphate-4-phosphatase, type II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-114405187-2	chr9	114405087	114405287	+	604.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001200002, exon 2 of 2)	exon (NM_001200002, exon 2 of 2)	4092.0	NM_001200002	100504715.0	Mm.290516	NM_001200002	ENSMUSG00000079260	Tmppe	-	transmembrane protein with metallophosphoesterase domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-89355699-4	chr15	89355604	89355804	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271601)	promoter-TSS (NM_001271601)	-15.0	NR_073376	52683.0	Mm.143167	NM_001115132	ENSMUSG00000008690	Ncaph2	-	non-SMC condensin II complex, subunit H2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-40974717-2	chr5	40974617	40974817	+	854.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	732974.0	NM_001310592	100972.0	Mm.41555	NM_027295	ENSMUSG00000029128	Rab28	2700023P08Rik|AW496496	RAB28, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16052039-4	chr7	16051964	16052164	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19781.0	NM_001347559	666528.0	Mm.290718	NM_001099277	ENSMUSG00000078796	Zfp541	EG666528|Znf541	zinc finger protein 541	protein-coding	1.4785275864307	3.43361938350474	3.54744212910473	3.51641181155622	2.3197637630521	3.45875829094688	3.42598356358602	3.3964602253426	0.0109930770677877	0.988195763792184	0.998431161219273
Merged-chr8-68092881-4	chr8	68092780	68092980	+	754.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-118306.0	NM_177698	234353.0	Mm.32525	NM_027626	ENSMUSG00000030465	Psd3	4931420C21Rik|AI661273|BC003498|D430018P08|EFA6D	pleckstrin and Sec7 domain containing 3	protein-coding	-0.348770917087869	-0.977870260089896	-0.989819320508362	-0.991994201976819	-0.84630853562483	-0.975263707176863	-0.987175509973415	-0.991614408081669	-1.97168503206029	0.529110519935892	1
Merged-chr7-45521312-4	chr7	45521045	45521245	+	819.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045555, intron 11 of 13)	intron (NM_001045555, intron 11 of 13)	5123.0	NM_008654	17872.0	Mm.4048	NM_008654	ENSMUSG00000040435	Ppp1r15a	9630030H21|Gadd34|Myd116	protein phosphatase 1, regulatory (inhibitor) subunit 15A	protein-coding	-0.111565448257343	-0.545227518730844	-0.548459408470454	-0.550941108567326	-0.554430428142207	-0.544496634763374	-0.377771860892882	-0.144980882621382	0.29357657970118	0.912691822761524	1
Merged-chr11-58093991-2	chr11	58093891	58094091	+	732.083374	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-9979.0	NM_026949	69125.0	Mm.28910	NM_026949	ENSMUSG00000020515	Cnot8	1500015I04Rik|1810022F04Rik|AA536816|AU015770|AU043059	CCR4-NOT transcription complex, subunit 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-144105730-2	chr2	144105630	144105830	+	625.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	72628.0	NM_207275	403171.0	Mm.389362	NM_207275	ENSMUSG00000037307	Banf2	4930517K23Rik|Baf-L|Baf-like|Gm115	barrier to autointegration factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-154285967-2	chr3	154285867	154286067	+	565.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	44593.0	NM_010713	16875.0	Mm.15530	NM_010713	ENSMUSG00000096225	Lhx8	L3|Lhx7	LIM homeobox protein 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-113770534-4	chr7	113770439	113770639	+	958.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145584, intron 1 of 15)	intron (NM_145584, intron 1 of 15)	4541.0	NM_145584	233744.0	Mm.334160	NM_145584	ENSMUSG00000038156	Spon1	AI666765|AW455831|BC020531|D330035F22Rik|FSP	spondin 1, (f-spondin) extracellular matrix protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-7967299-1	chr10	7967199	7967399	+	543.0	f1_balb.idr	Intergenic	Intergenic	-11176.0	NM_138667	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114965091-2	chr11	114964937	114965137	+	723.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4620.0	NM_199225	387565.0	Mm.351450	NM_199225	ENSMUSG00000058728	Cd300c	Clm6	CD300C molecule	protein-coding	2.80918052517296	3.05679413916023	2.68806599476346	3.40840851497223	2.48069144713617	4.45849501471397	3.45605004008949	2.75484934993874	0.800523339443245	0.23913753388252	0.735635286471347
Merged-chr2-14242581-4	chr2	14242449	14242649	+	960.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008625, intron 2 of 29)	intron (NM_008625, intron 2 of 29)	13135.0	NM_008625	17533.0	Mm.2019	NM_008625	ENSMUSG00000026712	Mrc1	AW259686|CD206|MR	mannose receptor, C type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-64593008-2	chr17	64592908	64593108	+	750.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8641.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-31138649-4	chr3	31138566	31138766	+	884.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-11254.0	NM_008770	18417.0	Mm.4425	NM_008770	ENSMUSG00000037625	Cldn11	Claudin-11|Claudin11|Osp|Otm	claudin 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96294022-4	chr3	96293920	96294120	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010186)	promoter-TSS (NM_010186)	-51.0	NM_010186	14129.0	Mm.150	NM_010186	ENSMUSG00000015947	Fcgr1	AI323638|AV092959|CD64|FcgammaRI|IGGHAFC	Fc receptor, IgG, high affinity I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34968526-2	chr17	34968426	34968626	+	669.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_010479)	TTS (NM_010479)	3630.0	NM_010479	193740.0	Mm.6388	NM_010479	ENSMUSG00000091971	Hspa1a	Hsp70-3|Hsp70.3|Hsp72|hsp68|hsp70A1	heat shock protein 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-26470115-2	chr2	26470015	26470215	+	714.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_105962)	promoter-TSS (NR_105962)	4.0	NR_105962	102465602.0		NR_105962	ENSMUSG00000098548	Mir6996	Gm27531|mmu-mir-6996	microRNA 6996	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70652562-2	chr11	70652462	70652662	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011072, intron 2 of 2)	intron (NM_011072, intron 2 of 2)	2088.0	NM_011072	18643.0	Mm.2647	NM_011072	ENSMUSG00000018293	Pfn1	Pfn	profilin 1	protein-coding	-0.986117776978398	-1.33156256825259	-1.34133402424827	-1.34936058913999	-1.21427833167172	-1.32944505297573	-1.33912198079506	-1.34792383786197	-0.98711403806483	0.775821656509867	1
Merged-chr2-133669996-2	chr2	133669896	133670096	+	627.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	105288.0	NR_037273	100526500.0		NR_037273	ENSMUSG00000093338	Mir3090	mmu-mir-3090	microRNA 3090	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-45669815-4	chr5	45669699	45669899	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019438)	promoter-TSS (NM_019438)	-91.0	NR_073433	69788.0	Mm.381492	NR_073433	ENSMUSG00000104986	1600023N17Rik	AV119442	RIKEN cDNA 1600023N17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-58249760-4	chr9	58249604	58249804	+	978.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311088)	promoter-TSS (NM_001311088)	82.0	NM_008884	18854.0	Mm.392123	NM_008884	ENSMUSG00000036986	Pml	1200009E24Rik|AI661194|Trim19	promyelocytic leukemia	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102398166-2	chr12	102398055	102398255	+	736.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_011175, intron 11 of 13)	intron (NM_011175, intron 11 of 13)	41658.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	-1.69986312423686	-1.81314243252593	-1.82225744210362	-1.82974478236248	-1.84116796638235	-1.66774645889968	-1.82019400373055	-1.82840455203593	0.0376840119903864	0.991491645451152	1
Merged-chr1-117730059-2	chr1	117729959	117730159	+	592.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13B|LTR|ERVK	580669.0	NR_153836	22099.0	Mm.426637	NM_011650	ENSMUSG00000026374	Tsn	2610034C24Rik|AU040286|C3PO|TB-RBP	translin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-34054509-1	chr8	34054409	34054609	+	619.0	f1_c57bl6.idr	Intergenic	Intergenic	53305.0	NM_001293758	22428.0	Mm.150373	NM_011722	ENSMUSG00000031516	Dctn6	AU044699|WS-3|p27	dynactin 6	protein-coding	0.69089479355304	0.173455008502097	0.167991754197854	0.569123507656467	0.416430172849139	0.174688796733789	0.169195297243939	0.678748164222497	-0.30942818230968	0.877671961381645	1
Merged-chr1-170172058-2	chr1	170171958	170172158	+	578.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133806, intron 1 of 10)	intron (NM_133806, intron 1 of 10)	2906.0	NM_133806	107652.0	Mm.27969	NM_133806	ENSMUSG00000026670	Uap1	AA420407|AA437972|AGX-1|AGX-2|AGX1|AgX|ESTM38|SPAG2	UDP-N-acetylglucosamine pyrophosphorylase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71474772-2	chr8	71474678	71474878	+	809.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_122114, exon 4 of 4)	non-coding (NR_122114, exon 4 of 4)	5584.0	NR_122114	66498.0	Mm.260360	NM_025600	ENSMUSG00000074247	Dda1	1500034J01Rik|1700095J19Rik|R74921	DET1 and DDB1 associated 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-86170853-4	chr15	86170746	86170946	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145475, intron 1 of 12)	intron (NM_145475, intron 1 of 12)	-14882.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-33282545-4	chr4	33282451	33282651	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27760.0	NM_011884	24018.0	Mm.240024	NM_011884	ENSMUSG00000028274	Rngtt	AU020997|HCE|MCE1	RNA guanylyltransferase and 5'-phosphatase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-19216465-4	chr3	19216369	19216569	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356295, intron 5 of 7)	intron (NM_001356295, intron 5 of 7)	28174.0	NM_001356295	67472.0	Mm.45125	NM_026182	ENSMUSG00000027601	Mtfr1	1300002C08Rik|1700080D04Rik|2810026O10Rik|4930579E05Rik|Chppr|Fam54a2	mitochondrial fission regulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-82240868-4	chr12	82240762	82240962	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167983, intron 2 of 23)	intron (NM_001167983, intron 2 of 23)	-70487.0	NM_172579	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-3259955-2	chr9	3259855	3260055	+	703.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60142.0	NR_027988	114673.0	Mm.422774	NM_053265	ENSMUSG00000042360	4930433N12Rik	-	RIKEN cDNA 4930433N12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-26561837-4	chr2	26561748	26561948	+	873.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19208.0	NM_178444	353156.0	Mm.268933	NM_178444	ENSMUSG00000026921	Egfl7	VE-statin|Zneu1	EGF-like domain 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-87688140-2	chr4	87688040	87688240	+	545.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	118183.0	NM_001286158	70122.0	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126643731-3	chr8	126643653	126643853	+	802.944458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TTTTG)n|Simple_repeat|Simple_repeat	-50317.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	3.25809059778587	1.42233534994685	3.28364570136567	2.03218479685244	3.28492742803693	1.43307876576074	3.3094426999762	2.0438967074382	0.0402916578605684	0.966281536120724	0.998431161219273
Merged-chr5-115528282-3	chr5	115528159	115528359	+	896.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011223, intron 1 of 10)	intron (NM_011223, intron 1 of 10)	21583.0	NM_133915	19303.0	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-101719419-2	chr4	101719319	101719519	+	558.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146146, intron 1 of 18)	intron (NM_146146, intron 1 of 18)	2012.0	NM_010704	16847.0	Mm.259282	NM_010704	ENSMUSG00000057722	Lepr	LEPROT|Leprb|Modb1|OB-RGRP|Obr|db|diabetes|obese-like|obl	leptin receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-78205211-3	chr17	78205116	78205316	+	805.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015800, intron 1 of 16)	intron (NM_015800, intron 1 of 16)	4968.0	NM_015800	50766.0	Mm.311912	NM_015800	ENSMUSG00000024074	Crim1	AU015004	cysteine rich transmembrane BMP regulator 1 (chordin like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-4078447-4	chr7	4078317	4078517	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033568, intron 6 of 8)	intron (NR_033568, intron 6 of 8)	-15213.0	NM_001302676	52855.0	Mm.290880	NM_178611	ENSMUSG00000055541	Lair1	5133400O11Rik|BB115266|D7Bwg0421e|Lair-1	leukocyte-associated Ig-like receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-25395553-3	chr10	25395451	25395651	+	863.8999630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358754, intron 1 of 16)	intron (NM_001358754, intron 1 of 16)	-12817.0	NM_013511	13822.0	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-44752317-3	chr10	44752214	44752414	+	841.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-293566.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-88509992-2	chr15	88509892	88510092	+	656.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-90310.0	NM_027306	70073.0	Mm.45306	NM_027306	ENSMUSG00000054117	Zdhhc25	1700030J15Rik	zinc finger, DHHC domain containing 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-51913463-3	chr14	51913366	51913566	+	912.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145959)	promoter-TSS (NM_001145959)	22.0	NM_001145959	29811.0	Mm.26722	NM_013864	ENSMUSG00000004558	Ndrg2	AI182517|AU040374|Ndr2|SYLD	N-myc downstream regulated gene 2	protein-coding	2.07003472901035	2.59466887621261	2.50635777223724	2.96539039511173	2.32836092699795	1.47995560714601	3.14334307936016	2.32777455384948	-0.224926077095765	0.793427664163001	0.998431161219273
Merged-chr14-74732252-4	chr14	74732153	74732353	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285423)	promoter-TSS (NM_001285423)	-44.0	NM_001285423	13885.0	Mm.38055	NM_016903	ENSMUSG00000021996	Esd	Es-10|Es10|FGH|sid478	esterase D/formylglutathione hydrolase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-173089643-4	chr2	173089546	173089746	+	908.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29879.0	NM_001081387	664799.0	Mm.389396	NM_001081387	ENSMUSG00000070495	Ctcfl	Boris	CCCTC-binding factor (zinc finger protein)-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122426244-2	chr8	122426144	122426344	+	567.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_007806, exon 5 of 6)	exon (NM_007806, exon 5 of 6)	4224.0	NM_145834	234836.0	Mm.222808	NM_145834	ENSMUSG00000046108	Il17c	IL-17C	interleukin 17C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-164909757-4	chr2	164909644	164909844	+	836.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199027, intron 2 of 27)	intron (NM_199027, intron 2 of 27)	2006.0	NM_199027	329559.0	Mm.330776	NM_199027	ENSMUSG00000039834	Zfp335	1810045J01Rik|NIF-1|Nif1|Znf335	zinc finger protein 335	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-24306829-4	chr2	24306723	24306923	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15627.0	NM_153077	215274.0	Mm.218750	NM_153077	ENSMUSG00000046845	Il1f10	-	interleukin 1 family, member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-35335143-6	chr7	35334989	35335189	+	905.4055789999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027897, intron 1 of 14)	CpG	852.0	NM_027897	52428.0	Mm.286600	NM_027897	ENSMUSG00000030494	Rhpn2	1300002E07Rik|AA536890|C85860|D7Ertd784e	rhophilin, Rho GTPase binding protein 2	protein-coding	0.777472997489701	0.518033689753799	1.11187258422941	0.50205153180951	1.26478751358967	1.17731884093805	0.703773937469598	0.503273983765355	1.00982786369144	0.540847181047811	1
Merged-chr12-102501230-4	chr12	102501136	102501336	+	860.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	31326.0	NM_013747	27277.0	Mm.273370	NM_013747	ENSMUSG00000021192	Golga5	Ret-II	golgi autoantigen, golgin subfamily a, 5	protein-coding	3.28625859340374	1.75300892896735	3.70556803777196	3.89616707392392	3.23926435668562	3.13626248465022	3.02690811726045	4.23312703631076	0.202245634925567	0.767793244616508	0.998431161219273
Merged-chr4-154881500-1	chr4	154881400	154881600	+	725.0	f0_balb.idr	intron (NM_013783, intron 2 of 23)	intron (NM_013783, intron 2 of 23)	-9497.0	NR_154548	102634887.0	Mm.72944	NR_154548		Gm13112	-	predicted gene 13112	ncRNA	1.81633481102638	1.88449608143262	1.82384864399662	1.21788328526965	2.30138603848794	2.29533206700984	1.83742285253847	2.33678282303275	1.38939740641216	0.157444000943613	0.614080550513332
Merged-chr19-47356635-3	chr19	47356514	47356714	+	935.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008018, intron 5 of 14)	intron (NM_008018, intron 5 of 14)	-83025.0	NR_105961	102466782.0		NR_105961	ENSMUSG00000098786	Mir6995	Gm27576|mmu-mir-6995	microRNA 6995	ncRNA	3.48551903182344	2.27403816983012	2.7269002677731	2.11150686143299	4.20748279876298	3.24873107102525	3.86698646737187	4.28398348722557	1.82019554453326	0.00359215787565219	0.0516358348946585
Merged-chr12-3893881-2	chr12	3893781	3893981	+	641.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153743, intron 1 of 17)	intron (NM_153743, intron 1 of 17)	2137.0	NM_153743	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-4309690-4	chr9	4309600	4309800	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026276)	promoter-TSS (NM_026276)	-43.0	NM_001164574	69149.0	Mm.25946	NM_026962	ENSMUSG00000025893	Kbtbd3	2200003A07Rik|Bklhd3	kelch repeat and BTB (POZ) domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26068917-3	chr17	26068817	26069017	+	834.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001162868, exon 1 of 14)	exon (NM_001162868, exon 1 of 14)	260.0	NM_001162868	215445.0	Mm.41191	NM_153140	ENSMUSG00000037098	Rab11fip3	Cart1|D030060O14Rik|Rab11-FIP3|mKIAA0665	RAB11 family interacting protein 3 (class II)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165917411-4	chr2	165917309	165917509	+	976.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER20C_Mm|LTR|ERVK	-32571.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80139030-6	chr10	80138939	80139139	+	954.033325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_036582, intron 1 of 10)	CpG	328.0	NR_036582	100503659.0	Mm.485395	NM_015761	ENSMUSG00000035640	Cbarp	9630008F14|Dos|R29144/1	calcium channel, voltage-dependent, beta subunit associated regulatory protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127870623-1	chr7	127870523	127870723	+	544.0	f1_balb.idr	intron (NM_146259, intron 1 of 2)	B2_Mm2|SINE|B2	5019.0	NM_001362192	244219.0	Mm.207872	NM_146259	ENSMUSG00000049728	Zfp668	BC030314|E130018B19Rik|Znf668	zinc finger protein 668	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-41473917-4	chr10	41473813	41474013	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2401.0	NM_001164433	171580.0	Mm.290431	NM_138315	ENSMUSG00000019823	Mical1	MICAL|MICAL-1|Nical	microtubule associated monooxygenase, calponin and LIM domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-41129599-4	chr4	41129498	41129698	+	723.799988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5259.0	NM_139236	230082.0	Mm.285797	NM_139236	ENSMUSG00000028430	Nol6	AA410091|Nrap	nucleolar protein family 6 (RNA-associated)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19304385-2	chr7	19304285	19304485	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008036, exon 4 of 4)	3' UTR (NM_008036, exon 4 of 4)	5660.0	NM_008036	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32494633-4	chr2	32494540	32494740	+	926.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-40719.0	NM_153560	98952.0	Mm.4065	NM_153560	ENSMUSG00000039157	Fam102a	AI426465|C230093N12Rik|Eeig1	family with sequence similarity 102, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33753223-2	chr16	33753123	33753323	+	842.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175256, intron 12 of 14)	intron (NM_175256, intron 12 of 14)	-40814.0	NM_010739	17063.0	Mm.3177	NM_010739	ENSMUSG00000022824	Muc13	114/A10|14/A10|AI159736|Lrrp|Ly64|NJ-1	mucin 13, epithelial transmembrane	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-25272042-1	chr6	25271942	25272142	+	781.0	f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-315917.0	NM_177013	319832.0	Mm.127446	NM_177013	ENSMUSG00000048022	Tmem229a	6332401O19Rik	transmembrane protein 229A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-72136894-4	chr8	72136816	72137016	+	897.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001491, intron 1 of 7)	(TG)n|Simple_repeat|Simple_repeat	1624.0	NM_001001491	326618.0	Mm.295124	NM_001001491	ENSMUSG00000031799	Tpm4	2610528G24Rik|Tpm4.2|Tpm4.2cy	tropomyosin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-41825694-2	chr6	41825594	41825794	+	727.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21855.0	NM_008843	18716.0	Mm.214755	NM_008843	ENSMUSG00000058499	Pip	GCDFP-15|GP17|SMGP	prolactin induced protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140752700-3	chr5	140752540	140752740	+	665.6270139999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_173405, exon 8 of 8)	3' UTR (NM_173405, exon 8 of 8)	28513.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-59993113-1	chr1	59993013	59993213	+	834.0	f1_c57bl6.idr	intron (NM_001357296, intron 10 of 10)	MTC|LTR|ERVL-MaLR	50009.0	NM_001357296	70375.0	Mm.17834	NM_027407	ENSMUSG00000026018	Ica1l	1700030B17Rik|Als2cr15|b2b3465Clo	islet cell autoantigen 1-like	protein-coding	0.411187707618553	1.20739259639639	0.429468713830383	0.998570665734018	0.412896808708674	0.828467982415871	0.431416945386791	1.10913912874702	-0.410766863868529	0.819675956800352	1
Merged-chr5-32930964-4	chr5	32930851	32931051	+	962.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025426, intron 25 of 42)	intron (NM_001025426, intron 25 of 42)	67230.0	NM_001170567	277854.0	Mm.101524	NM_177786	ENSMUSG00000037426	Depdc5	AV016528	DEP domain containing 5	protein-coding	3.1850765593441	4.07957339066739	3.08952533558119	2.33049870638754	3.2115498890876	3.67092836873676	2.88184556056315	3.2076465387084	-0.0776878414583822	0.9037077399827	0.998431161219273
Merged-chr6-124997521-3	chr6	124997439	124997639	+	682.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145927)	promoter-TSS (NM_001145927)	819.0	NM_175696	319352.0	Mm.295327	NM_175696	ENSMUSG00000030329	Pianp	AI255183|AU067746|C530028O21Rik|Panp	PILR alpha associated neural protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191120155-2	chr1	191120055	191120255	+	868.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR17B_Mm|LTR|ERVK	21741.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-90216611-2	chr3	90216511	90216711	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001293741, intron 1 of 7)	B1_Mus2|SINE|Alu	2896.0	NM_001293741	68328.0	Mm.29355	NM_026677	ENSMUSG00000027935	Rab13	0610007N03Rik|B230212B15Rik	RAB13, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-55784729-4	chr7	55784635	55784835	+	979.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M3|LINE|L1	-9390.0	NM_001360874	233276.0	Mm.284306	NM_146190	ENSMUSG00000033790	Tubgcp5	B130010C12Rik|GCP5|mKIAA1899	tubulin, gamma complex associated protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118178356-3	chr11	118178283	118178483	+	887.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001112700, intron 9 of 12)	intron (NM_001112700, intron 9 of 12)	34359.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-23842502-2	chr5	23842402	23842602	+	592.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025394, intron 1 of 2)	PB1D10|SINE|Alu	1643.0	NM_025394	66169.0	Mm.291868	NM_025394	ENSMUSG00000028998	Tomm7	1110020J08Rik|AW047273|Tom7	translocase of outer mitochondrial membrane 7	protein-coding	-2.18292257394068	-2.15545247547656	-2.03304972317742	-2.17058342868585	-2.18099422382073	-2.1536522739386	-2.16187909550322	-2.16936197735154	-0.683654500252594	0.846597994014493	1
Merged-chr13-54818968-4	chr13	54818847	54819047	+	905.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29542.0	NM_028841	74257.0	Mm.32883	NM_028841	ENSMUSG00000025875	Tspan17	2210021G21Rik|AI047581|Fbxo23|Tm4sf17	tetraspanin 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-86007469-2	chr12	86007369	86007569	+	794.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347395, intron 30 of 32)	intron (NM_001347395, intron 30 of 32)	71572.0	NM_009368	21809.0	Mm.3992	NM_009368	ENSMUSG00000021253	Tgfb3	TGF-beta-3|Tgfb-3	transforming growth factor, beta 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-52965223-3	chr2	52965124	52965324	+	879.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	107356.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-148731839-3	chr2	148731727	148731927	+	802.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019632, intron 1 of 10)	intron (NM_019632, intron 1 of 10)	593.0	NM_019632	17957.0	Mm.274308	NM_019632	ENSMUSG00000027438	Napb	Brp14|E161|I47|SNARE|b-SNAP	N-ethylmaleimide sensitive fusion protein attachment protein beta	protein-coding	3.32620316181753	2.3159063845047	3.59596149838098	2.16545198061156	3.10628281790939	3.13874643521754	3.1249711018267	1.48887905627785	-0.230924600019432	0.775257628491156	0.998431161219273
Merged-chr12-83687192-2	chr12	83687092	83687292	+	944.6666869999999	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001362271)	promoter-TSS (NM_001362271)	-960.0	NM_001362271	19164.0	Mm.998	NM_008943	ENSMUSG00000019969	Psen1	Ad3h|PS-1|PS1|S182	presenilin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-86210371-2	chr15	86210271	86210471	+	798.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4088.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10173655-4	chr19	10173569	10173769	+	963.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9219.0	NM_146094	76267.0	Mm.30158	NM_146094	ENSMUSG00000010663	Fads1	0710001O03Rik|A930006B21Rik|AI317215|DSD	fatty acid desaturase 1	protein-coding	0.420410938462832	0.466850720135645	1.43127657777309	0.440423969112009	0.423440525022681	1.72348060043977	1.44773330333554	0.442483588447207	1.37031566831336	0.665929267617546	0.992441953404519
Merged-chr16-17559147-3	chr16	17558991	17559191	+	815.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145435, intron 3 of 7)	intron (NM_001145435, intron 3 of 7)	2156.0	NM_029053	74685.0	Mm.38634	NM_029053	ENSMUSG00000022759	Lrrc74b	4930451C15Rik|mCG12354|mCP17390	leucine rich repeat containing 74B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-148511889-3	chr5	148511792	148511992	+	845.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359199, intron 4 of 6)	intron (NM_001359199, intron 4 of 6)	39781.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-124802080-4	chr4	124801984	124802184	+	972.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008636)	promoter-TSS (NM_008636)	-465.0	NM_008636	17764.0	Mm.272397	NM_008636	ENSMUSG00000028890	Mtf1	MTF-1|Thyls	metal response element binding transcription factor 1	protein-coding	2.14152037000319	1.91921056722492	2.44250089493117	2.57481039955411	2.27027884751624	1.43742135235783	2.76178090730383	2.97414320950875	0.431624985997789	0.626875040254058	0.980912176761026
Merged-chr13-104817075-4	chr13	104816967	104817167	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026072)	promoter-TSS (NM_026072)	-103.0	NM_026075	67288.0	Mm.125465	NM_026075	ENSMUSG00000021716	Srek1ip1	3110031B13Rik|AI462702|AV348305|AW121048|Sfrs12ip1|Srsf12ip1	splicing regulatory glutamine/lysine-rich protein 1interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-93729073-4	chr14	93728961	93729161	+	862.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081377, intron 2 of 4)	intron (NM_001081377, intron 2 of 4)	161608.0	NM_001271800	211712.0	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding	1.8739403694764	3.47489067275751	2.65787541811088	2.97745408702605	2.57515314616639	2.31970612798291	3.31962494109576	2.59515232089383	-0.197077273991508	0.795829155998543	0.998431161219273
Merged-chr2-121414436-4	chr2	121414341	121414541	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153075)	promoter-TSS (NM_153075)	539.0	NM_007952	14827.0	Mm.263177	NM_007952	ENSMUSG00000027248	Pdia3	58kDa|ERp57|ERp60|ERp61|Erp|Grp58|PDI|PDI-Q2|PI-PLC|PLC[a]|Plca	protein disulfide isomerase associated 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-68718259-2	chr7	68718159	68718359	+	842.099976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30979.0	NM_001042592	66412.0	Mm.251199	NM_025549	ENSMUSG00000042659	Arrdc4	2410003C09Rik|AV216361	arrestin domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-24602719-3	chr5	24602640	24602840	+	943.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025891)	promoter-TSS (NM_025891)	-738.0	NM_025891	66993.0	Mm.436539	NM_025891	ENSMUSG00000028949	Smarcd3	1500001J14Rik|2210409C08Rik|BAF60C	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-19006293-1	chr10	19006193	19006393	+	567.0	f0_balb.idr	intron (NM_001166402, intron 4 of 7)	MIRb|SINE|MIR	5670.0	NM_001166402	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-119472869-4	chr6	119472750	119472950	+	858.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009525, intron 1 of 4)	ERVL-int|LTR|ERVL	-5639.0	NM_001271758	22419.0	Mm.321818	NM_009525	ENSMUSG00000030170	Wnt5b	AW545702|Wnt-5b	wingless-type MMTV integration site family, member 5B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35821167-4	chr17	35821044	35821244	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133662)	promoter-TSS (NM_133662)	-569.0	NM_133662	15937.0	Mm.25613	NM_133662	ENSMUSG00000003541	Ier3	AI663993|IEX-1|cI-3|gly96	immediate early response 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-60768432-2	chr2	60768332	60768532	+	738.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001141932, intron 6 of 14)	intron (NM_001141932, intron 6 of 14)	-45829.0	NM_001159564	16420.0	Mm.98193	NM_021359	ENSMUSG00000026971	Itgb6	2210409C20Rik|4831415H04Rik	integrin beta 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134752442-4	chr6	134752328	134752528	+	972.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130447, intron 3 of 6)	intron (NM_130447, intron 3 of 6)	-39932.0	NR_151454	105242798.0	Mm.398227	NR_151454		1700055D16Rik	-	RIKEN cDNA 1700055D16 gene	ncRNA	3.47579299538377	3.64733913767793	3.60917981137273	3.72414453820354	3.80182465611179	3.48744460356458	3.27342200344074	4.07907716808807	0.134419498835028	0.790165830620637	0.998431161219273
Merged-chr7-118699035-4	chr7	118698912	118699112	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019580, intron 1 of 5)	intron (NM_019580, intron 1 of 5)	6726.0	NM_019580	56209.0	Mm.273142	NM_019580	ENSMUSG00000033917	Gde1	1200003M13Rik|Mir16|RGS16	glycerophosphodiester phosphodiesterase 1	protein-coding	5.40190294803765	6.14102274754606	5.3075485156019	5.73570028227619	5.65499610375812	6.54967978742647	5.24084190488299	5.44016353172327	0.147535989522474	0.646289714140319	0.984116759910594
Merged-chr16-87495918-4	chr16	87495843	87496043	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009840)	promoter-TSS (NM_009840)	-74.0	NM_009840	12469.0	Mm.328673	NM_009840	ENSMUSG00000025613	Cct8	AI132397|Cctq|Tcpq	chaperonin containing Tcp1, subunit 8 (theta)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-40132484-2	chr10	40132384	40132584	+	679.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 1 of 5)	intron (NM_001114332, intron 1 of 5)	9770.0	NM_028247	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-120278454-4	chr14	120278346	120278546	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360380, intron 1 of 7)	intron (NM_001360380, intron 1 of 7)	2777.0	NM_001360380	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-129727457-3	chr6	129727361	129727561	+	911.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1A|DNA|hAT-Charlie	-10329.0	NM_001012520	503550.0	Mm.376476	NM_001012520	ENSMUSG00000067610	Klri1	-	killer cell lectin-like receptor family I member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-125650313-2	chr8	125650213	125650413	+	770.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-19505.0	NM_028908	74393.0	Mm.41709	NM_028908	ENSMUSG00000050930	Map10	4933403G14Rik|AI835009|mKIAA1383	microtubule-associated protein 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-16871622-2	chr16	16871522	16871722	+	554.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011624, intron 1 of 17)	intron (NM_011624, intron 1 of 17)	886.0	NM_011624	21976.0	Mm.326089	NM_011624	ENSMUSG00000022779	Top3b	-	topoisomerase (DNA) III beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-80479845-4	chr17	80479734	80479934	+	986.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009231, intron 1 of 21)	CpG	619.0	NM_009231	20662.0	Mm.60975	NM_009231	ENSMUSG00000024241	Sos1	4430401P03Rik|9630010N06|AI449023	SOS Ras/Rac guanine nucleotide exchange factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-22138570-2	chr3	22138470	22138670	+	635.474976	f1_balb.idr|f1_c57bl6.idr	intron (NM_030732, intron 1 of 15)	intron (NM_030732, intron 1 of 15)	61918.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-121396131-1	chr5	121396031	121396231	+	592.0	f1_balb.idr	Intergenic	Intergenic	-1851.0	NM_172722	231713.0	Mm.33919	NM_172722	ENSMUSG00000042719	Naa25	4833422K13Rik|A630046C11|AI450868|C330023M02Rik|Mdm20	N(alpha)-acetyltransferase 25, NatB auxiliary subunit	protein-coding	0.699163387889651	0.47033878941839	0.155298649889282	0.151999967706993	0.480436117978679	0.4771374405118	0.156246951680636	0.152574157003377	-0.554038198779797	0.78687306483891	1
Merged-chr14-104002712-3	chr14	104002622	104002822	+	847.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045953, intron 1 of 2)	intron (NR_045953, intron 1 of 2)	24420.0	NR_045953	73877.0	Mm.399172	NR_045953	ENSMUSG00000115727	4930432J09Rik	-	RIKEN cDNA 4930432J09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-103068622-2	chr11	103068522	103068722	+	645.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008707, exon 12 of 12)	3' UTR (NM_008707, exon 12 of 12)	12326.0	NM_001361706	72469.0	Mm.264743	NM_152813	ENSMUSG00000020937	Plcd3	2610205J15Rik|mKIAA1964	phospholipase C, delta 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-84229126-4	chr3	84229011	84229211	+	925.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271726, intron 1 of 11)	intron (NM_001271726, intron 1 of 11)	-8234.0	NM_030706	80890.0	Mm.44876	NM_030706	ENSMUSG00000027993	Trim2	mKIAA0517|narf	tripartite motif-containing 2	protein-coding	-0.695141954693524	-0.687770355897957	-0.536462871548426	-0.428520214446088	-0.694689367649099	-0.687215781912382	-0.532578898806061	-0.424665932468481	0.0331748939854207	0.989891303086289	1
Merged-chr11-116602169-2	chr11	116602069	116602269	+	575.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001167680, intron 10 of 18)	intron (NM_001167680, intron 10 of 18)	8482.0	NM_009591	11298.0	Mm.42233	NM_009591	ENSMUSG00000020804	Aanat	AA-NAT|Nat-2|Nat4|Snat	arylalkylamine N-acetyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-102460702-2	chr15	102460602	102460802	+	657.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001170911, exon 3 of 4)	exon (NM_001170911, exon 3 of 4)	1532.0	NM_025385	66151.0	Mm.393955	NM_025385	ENSMUSG00000023048	Prr13	1110020C13Rik|2010324E22Rik	proline rich 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-35162814-4	chr2	35162714	35162914	+	876.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_012018, exon 31 of 44)	exon (NM_012018, exon 31 of 44)	30580.0	NM_001290635	26920.0	Mm.231332	NM_012018	ENSMUSG00000057110	Cntrl	6720467O09Rik|AA968343|Cep1|Cep110|IB3/5|Ma2a8|b2b1468.1Clo|b2b1468Clo	centriolin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91851835-7	chr16	91851715	91851915	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110275, intron 21 of 28)	intron (NM_001110275, intron 21 of 28)	79815.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124616664-4	chr5	124616566	124616766	+	795.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026486, intron 11 of 18)	intron (NM_026486, intron 11 of 18)	-12386.0	NM_011596	21871.0	Mm.1158	NM_011596	ENSMUSG00000038023	Atp6v0a2	8430408C20Rik|AI385560|ATP6a2|AW489264|Atp6n1d|Atp6n2|C76904|ISF|J6B7|SHIF|Stv1|TJ6M|TJ6s|Tj6|V-ATPase 116 kDa|V-ATPase a2	ATPase, H+ transporting, lysosomal V0 subunit A2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-41565870-3	chr12	41565766	41565966	+	746.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053122, intron 4 of 6)	intron (NM_053122, intron 4 of 6)	-79809.0	NM_010733	16981.0	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-75097658-2	chr8	75097557	75097757	+	831.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010442, intron 3 of 4)	intron (NM_010442, intron 3 of 4)	4039.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	0.285580123491044	0.0222616844418937	0.811402583196956	0.670852145151716	0.00443641713944443	0.0236561643536313	0.0174294954419232	0.012095445036396	-4.0888051866217	0.0560455982040684	1
Merged-chr1-34844515-1	chr1	34844415	34844615	+	550.0	f1_balb.idr	Intergenic	Intergenic	-1465.0	NM_001160236	214469.0	Mm.120151	NM_174997	ENSMUSG00000037503	Fam168b	Mani|mKIAA4042	family with sequence similarity 168, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-157850742-2	chr2	157850642	157850842	+	987.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025680, intron 11 of 15)	intron (NM_025680, intron 11 of 15)	-63911.0	NM_198627	277432.0	Mm.441156	NM_198627	ENSMUSG00000037843	Vstm2l	Gm691	V-set and transmembrane domain containing 2-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-67563362-4	chr11	67563251	67563451	+	991.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008088, intron 1 of 13)	intron (NM_008088, intron 1 of 13)	-23149.0	NM_001109657	14457.0	Mm.40338	NM_008088	ENSMUSG00000033066	Gas7	AW124766|B230343A10Rik|Gas7-cb	growth arrest specific 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153291382-4	chr2	153291283	153291483	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008444)	promoter-TSS (NM_008444)	-33.0	NM_008444	16569.0	Mm.315560	NM_008444	ENSMUSG00000027475	Kif3b	AI854312|AW549267|mKIAA0359	kinesin family member 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-65706350-2	chr17	65706250	65706450	+	578.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133685, intron 3 of 6)	intron (NM_133685, intron 3 of 6)	-64146.0	NM_001146002	213272.0	Mm.255732	NM_153519	ENSMUSG00000050612	Txndc2	AU021712|Sptrx-1|Sptrx1|Trx4	thioredoxin domain containing 2 (spermatozoa)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-105130990-1	chr9	105130890	105131090	+	589.0	f1_c57bl6.idr	intron (NM_029385, intron 2 of 2)	intron (NM_029385, intron 2 of 2)	815.0	NM_029385	75686.0	Mm.305810	NM_029385	ENSMUSG00000032565	Nudt16	2310041H06Rik|2810047L04Rik|2900006H04Rik|AI851783	nudix (nucleoside diphosphate linked moiety X)-type motif 16	protein-coding	1.12216574066501	0.716755359546889	0.70399950010183	1.52099664803578	0.854815775003523	0.719605649752498	1.5908831388522	1.61966186202858	0.779531664661212	0.603041076056647	0.973565005745828
Merged-chr7-75667218-3	chr7	75667113	75667313	+	651.866638	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 10 of 36)	intron (NM_029332, intron 10 of 36)	-181125.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-103972113-3	chr2	103972070	103972270	+	969.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142336, intron 2 of 3)	intron (NM_001142336, intron 2 of 3)	1883.0	NM_001142335	16909.0	Mm.29266	NM_008505	ENSMUSG00000032698	Lmo2	Rbtn-2|Rbtn2|Rhom-2|Ttg2	LIM domain only 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-25119739-4	chr8	25119632	25119832	+	901.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17553.0	NR_155282	74744.0	Mm.117802	NR_155282		5830408C22Rik	2700026D01Rik	RIKEN cDNA 5830408C22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-97918229-3	chr15	97918127	97918327	+	656.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9931.0	NM_009504	22337.0	Mm.245084	NM_009504	ENSMUSG00000022479	Vdr	Nr1i1	vitamin D (1,25-dihydroxyvitamin D3) receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-40950791-4	chr3	40950692	40950892	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040399, intron 1 of 9)	CpG-9127	161.0	NM_001040399	214048.0	Mm.46782	NM_027663	ENSMUSG00000025762	Larp1b	1700108L22Rik|4933421B21Rik|AA690246|Larp2	La ribonucleoprotein domain family, member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-31116607-2	chr17	31116507	31116707	+	556.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009593, exon 15 of 15)	3' UTR (NM_009593, exon 15 of 15)	13004.0	NM_011575	21786.0	Mm.4641	NM_011575	ENSMUSG00000024029	Tff3	ITF|mITF	trefoil factor 3, intestinal	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115248181-3	chr11	115248053	115248253	+	634.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19090.0	NM_010350	14813.0	Mm.39090	NM_010350	ENSMUSG00000020734	Grin2c	GluN2C|NMDAR2C|NR2C	glutamate receptor, ionotropic, NMDA2C (epsilon 3)	protein-coding	0.781430537949393	0.780932409975185	0.426829675860188	0.839220371079789	0.790145222128825	0.435427162736542	0.428377076276568	1.04764112718699	-0.0413860723711393	0.980707066798332	1
Merged-chr17-35159160-2	chr17	35159060	35159260	+	668.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_020027, exon 12 of 31)	exon (NM_020027, exon 12 of 31)	5717.0	NM_001199044	53761.0	Mm.272462	NM_020027	ENSMUSG00000024393	Prrc2a	3110039B05Rik|Bat-2|Bat2|D17H6S51E|G2|Wbp12|mKIAA4178	proline-rich coiled-coil 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-123427141-2	chr4	123427041	123427241	+	988.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199137, intron 52 of 92)	URR1A|DNA|hAT-Charlie	-15230.0	NM_001167918	442834.0	Mm.483803	NM_001167918		D830031N03Rik	Kiaa0754|mKIAA0754	RIKEN cDNA D830031N03 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-12599183-2	chr3	12599083	12599283	+	573.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1VL1|LINE|L1	-754824.0	NR_040751	100038545.0	Mm.388494	NR_040751	ENSMUSG00000104015	Gm10745	-	predicted gene 10745	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-25628559-3	chr14	25628485	25628685	+	659.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 6 of 23)	intron (NM_183208, intron 6 of 23)	25072.0	NM_001309430	100188919.0	Mm.473810	NM_001309430		Gm45915	Israa	predicted gene, 45915	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91599198-2	chr16	91599098	91599298	+	922.625	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1518.0	NM_030018	77975.0	Mm.290341	NM_030018	ENSMUSG00000022964	Tmem50b	AU015466|AU019872|B230114J08Rik	transmembrane protein 50B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-82987250-1	chr6	82987150	82987350	+	563.0	f1_c57bl6.idr	intron (NM_033079, intron 4 of 9)	intron (NM_033079, intron 4 of 9)	40328.0	NM_033079	110958.0	Mm.100652	NM_033079	ENSMUSG00000030041	M1ap	D6Mm5e	meiosis 1 associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-33248675-2	chr5	33248575	33248775	+	619.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001310535, exon 8 of 8)	exon (NM_001310535, exon 8 of 8)	26329.0	NM_001310535	13016.0	Mm.7286	NM_013502	ENSMUSG00000037373	Ctbp1	BARS|CtBP3/BARS|D4S115h|D5H4S115|D5H4S115E	C-terminal binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-116022157-2	chr6	116022057	116022257	+	793.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_177412, exon 6 of 6)	exon (NM_177412, exon 6 of 6)	-27152.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-84409010-4	chr12	84408919	84409119	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007647)	promoter-TSS (NM_007647)	10.0	NM_007647	12499.0	Mm.10211	NM_007647	ENSMUSG00000021236	Entpd5	AI196558|AI987697|Cd39l4|ER-UDPase|NTPDase-5|NTPDase5|Pcph|mNTPase	ectonucleoside triphosphate diphosphohydrolase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-126105471-2	chr4	126105371	126105571	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028800, intron 1 of 10)	L2c|LINE|L2	1514.0	NM_001145827	74178.0	Mm.440269	NM_028800	ENSMUSG00000042608	Stk40	2310004N11Rik|AI428792	serine/threonine kinase 40	protein-coding	1.37114306852263	0.51747812062856	1.45196292698958	0.498567776242691	1.03918710127494	0.519851672253894	0.509215327611412	0.85343494841623	-1.35834561994347	0.427804977845494	0.902814984320516
Merged-chr15-78873113-2	chr15	78873013	78873213	+	553.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-4077.0	NM_145929	106039.0	Mm.251331	NM_145929	ENSMUSG00000033128	Gga1	4930406E12Rik|AU016030|AW209092	golgi associated, gamma adaptin ear containing, ARF binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-31114619-2	chr7	31114516	31114716	+	712.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110252, intron 2 of 13)	intron (NM_001110252, intron 2 of 13)	710.0	NM_008281	15451.0	Mm.19182	NM_008281	ENSMUSG00000001249	Hpn	Hlb320	hepsin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28722460-3	chr17	28722318	28722518	+	715.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168513, intron 3 of 11)	PB1D10|SINE|Alu	29850.0	NM_001357724	26416.0	Mm.311337	NM_011951	ENSMUSG00000053436	Mapk14	CSBP2|Crk1|Csbp1|Mxi2|PRKM14|PRKM15|p38|p38-alpha|p38MAPK|p38a|p38alpha	mitogen-activated protein kinase 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80156910-2	chr10	80156810	80157010	+	641.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_021565, exon 9 of 9)	3' UTR (NM_021565, exon 9 of 9)	7228.0	NM_001305799	59090.0	Mm.143813	NM_021565	ENSMUSG00000035621	Midn	3000003C15Rik	midnolin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-32931904-4	chr14	32931818	32932018	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178791, intron 7 of 7)	intron (NM_178791, intron 7 of 7)	-59464.0	NM_001146021	67580.0	Mm.46115	NM_026253	ENSMUSG00000041673	Lrrc18	4930442L21Rik|MTLR1	leucine rich repeat containing 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-130916860-4	chr4	130916777	130916977	+	998.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010686, intron 1 of 7)	intron (NM_010686, intron 1 of 7)	3543.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97534369-2	chr11	97534269	97534469	+	878.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_018873, intron 8 of 19)	intron (NM_018873, intron 8 of 19)	-34029.0	NM_001289118	100141474.0	Mm.482426	NM_001289118	ENSMUSG00000047988	4933428G20Rik	-	RIKEN cDNA 4933428G20 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-46552941-4	chr17	46552842	46553042	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_105942)	TTS (NR_105942)	947.0	NR_105942	102466778.0		NR_105942	ENSMUSG00000106514	Mir6976	mmu-mir-6976	microRNA 6976	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-95591267-4	chr1	95591168	95591368	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009183, exon 5 of 5)	3' UTR (NM_009183, exon 5 of 5)	76326.0	NM_009183	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-51357857-2	chr3	51357757	51357957	+	833.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-17213.0	NM_023502	69257.0	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-83198111-4	chr10	83198009	83198209	+	891.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	139708.0	NM_177388	338365.0	Mm.67073	NM_177388	ENSMUSG00000034591	Slc41a2	A230035L05Rik|SLC41A1-L1	solute carrier family 41, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119267230-2	chr11	119267139	119267339	+	884.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159324)	promoter-TSS (NM_001159324)	-724.0	NM_001159324	14387.0	Mm.4793	NM_008064	ENSMUSG00000025579	Gaa	E430018M07Rik	glucosidase, alpha, acid	protein-coding	3.4781741039448	3.68637246746104	2.82191627111145	2.60541548292748	3.01783751973677	4.17814373251457	2.70909710908041	2.47114903469767	0.0885336394741992	0.897132657401726	0.998431161219273
Merged-chr13-119614767-3	chr13	119614690	119614890	+	784.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9029.0	NM_020279	56838.0	Mm.143745	NM_020279	ENSMUSG00000074715	Ccl28	CCK1|MEC|Scya28	chemokine (C-C motif) ligand 28	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-80230367-2	chr15	80230267	80230467	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3713.0	NM_001357659	239555.0	Mm.307163	NM_178719	ENSMUSG00000022412	Mief1	A230016E22|AI452372|Smcr7l	mitochondrial elongation factor 1	protein-coding	0.338562973459332	0.731254245625489	0.19764802219967	0.191883668678266	0.597661490755568	0.206739486301165	0.199290039543481	1.12939299783289	1.27472980229529	0.51147486356548	1
Merged-chr17-83526395-2	chr17	83526295	83526495	+	729.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12062.0	NM_001159529	20463.0	Mm.30072	NM_009187	ENSMUSG00000024248	Cox7a2l	COX7AR|COX7RP|EB1|SIG-81|SIG81|Silg81	cytochrome c oxidase subunit VIIa polypeptide 2-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-120601503-2	chr5	120601403	120601603	+	938.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_029408, intron 2 of 4)	B3A|SINE|B2	11086.0	NM_029096	100764.0	Mm.9654	NM_029096	ENSMUSG00000029600	Rita1	1110008J03Rik|AI853657|C86297|Rita	RBPJ interacting and tubulin associated 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-64597763-4	chr1	64597716	64597916	+	775.982117	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009952, exon 9 of 9)	3' UTR (NM_009952, exon 9 of 9)	19352.0	NM_025964	67099.0	Mm.46394	NM_025964	ENSMUSG00000025956	Mettl21a	2310038H17Rik|AI464204|Fam119a	methyltransferase like 21A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-58128113-4	chr13	58127959	58128159	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029872, exon 1 of 1)	exon (NM_029872, exon 1 of 1)	497.0	NM_029872	77134.0	Mm.490274	NM_029872	ENSMUSG00000007836	Hnrnpa0	1110055B05Rik|3010025E17Rik|Hnrpa0|hnRNP A0	heterogeneous nuclear ribonucleoprotein A0	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-4062992-6	chr7	4062788	4062988	+	877.5238039999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178611, intron 1 of 6)	intron (NM_178611, intron 1 of 6)	316.0	NM_001302677	52855.0	Mm.290880	NM_178611	ENSMUSG00000055541	Lair1	5133400O11Rik|BB115266|D7Bwg0421e|Lair-1	leukocyte-associated Ig-like receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-101177982-4	chr2	101177879	101178079	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-446769.0	NM_009020	19374.0	Mm.4988	NM_009020	ENSMUSG00000032864	Rag2	Rag-2	recombination activating gene 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-97754389-4	chr4	97754186	97754386	+	796.549988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122952, intron 1 of 10)	intron (NM_001122952, intron 1 of 10)	-23340.0	NM_001122953	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-25834189-2	chr17	25834089	25834289	+	960.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019719)	promoter-TSS (NM_019719)	-828.0	NM_019719	56424.0	Mm.277599	NM_019719	ENSMUSG00000039615	Stub1	0610033N24Rik|2210017D18Rik|2310040B03Rik|AW046544|Chip	STIP1 homology and U-Box containing protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126796589-3	chr7	126796498	126796698	+	958.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001177308, exon 5 of 9)	exon (NM_001177308, exon 5 of 9)	2580.0	NM_001177307	11674.0	Mm.275831	NM_007438	ENSMUSG00000030695	Aldoa	Aldo-1|Aldo1	aldolase A, fructose-bisphosphate	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-88953274-3	chr5	88953250	88953450	+	836.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359211, intron 2 of 26)	intron (NM_001359211, intron 2 of 26)	66090.0	NM_018760	54403.0	Mm.41044	NM_018760	ENSMUSG00000060961	Slc4a4	AI835705|NBC|NBC1	solute carrier family 4 (anion exchanger), member 4	protein-coding	2.80383641279777	2.8979141470564	2.70303455350631	3.0924298293528	1.28748808335177	2.59570584370371	1.38161568870136	2.3017756771607	-1.83610543079247	0.0396970014106145	0.283608077699256
Merged-chr7-84605932-4	chr7	84605853	84606053	+	995.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010176)	promoter-TSS (NM_010176)	-11.0	NM_010176	14085.0	Mm.3798	NM_010176	ENSMUSG00000030630	Fah	swst	fumarylacetoacetate hydrolase	protein-coding	-0.207920675504996	-0.646352540822158	-0.481159968488157	-0.651800165412098	-0.655129023915368	-0.301188079575699	-0.648755261054511	-0.651387367876587	-0.955230631300693	0.729196383778374	1
Merged-chr19-14507822-4	chr19	14507703	14507903	+	907.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302951, intron 8 of 19)	intron (NM_001302951, intron 8 of 19)	-69297.0	NR_003027	19862.0		NR_003027	ENSMUSG00000095132	Rnu6	-	U6 small nuclear RNA	snRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-30579360-4	chr14	30579247	30579447	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7198.0	NR_037237	100526475.0		NR_037237	ENSMUSG00000093156	Mir3076	mir-3076|mmu-mir-3076	microRNA 3076	ncRNA	6.02505325017844	5.3307835457418	5.65738059650108	5.79992959880907	5.80551926633075	5.32829277482995	5.79318020407929	5.7599933539888	-0.0495887635749665	0.851030619430622	0.998431161219273
Merged-chr13-110369488-1	chr13	110369388	110369588	+	594.0	f1_balb.idr	Intergenic	Intergenic	-12316.0	NM_177713	238875.0	Mm.30533	NM_177713	ENSMUSG00000046006	Gapt	9830130M13Rik	Grb2-binding adaptor, transmembrane	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-130812693-2	chr4	130812593	130812793	+	623.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011520, intron 1 of 4)	intron (NM_011520, intron 1 of 4)	20156.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-6256436-4	chr2	6256330	6256530	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040333, intron 3 of 6)	intron (NR_040333, intron 3 of 6)	-43436.0	NM_024208	67856.0	Mm.38342	NM_024208	ENSMUSG00000039063	Echdc3	2310005D12Rik|AI662097	enoyl Coenzyme A hydratase domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-5369328-3	chr11	5369235	5369435	+	939.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080924, intron 1 of 8)	intron (NM_001080924, intron 1 of 8)	12405.0	NM_001290501	407821.0	Mm.216313	NM_001080924	ENSMUSG00000041961	Znrf3	Gm1167	zinc and ring finger 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70076853-4	chr14	70076770	70076970	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289925)	promoter-TSS (NM_001289925)	-575.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-79832279-2	chr10	79832179	79832379	+	649.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 3 of 4)	intron (NR_038088, intron 3 of 4)	11258.0	NM_030218	78906.0	Mm.33087	NM_030218	ENSMUSG00000035852	Misp	9130017N09Rik	mitotic spindle positioning	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-15922480-4	chr7	15922372	15922572	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009156)	promoter-TSS (NM_009156)	-101.0	NM_009156	20364.0	Mm.42829	NM_009156	ENSMUSG00000041571	Selenow	Sepw1|selW	selenoprotein W	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-90413462-1	chr5	90413362	90413562	+	595.0	f0_balb.idr	Intergenic	Lx6|LINE|L1	46465.0	NR_045618	791294.0	Mm.30508	NR_045618	ENSMUSG00000054945	Gm9958	-	predicted gene 9958	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-95258683-4	chr11	95258598	95258798	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2831.0	NM_053093	93670.0	Mm.40085	NM_053093	ENSMUSG00000020872	Tac4	AW489379|PPT-C	tachykinin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-5539569-4	chr15	5539517	5539717	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045274, intron 1 of 4)	intron (NR_045274, intron 1 of 4)	43299.0	NR_045274	71432.0	Mm.291087	NR_045274	ENSMUSG00000110018	5430437J10Rik	-	RIKEN cDNA 5430437J10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-57407684-3	chr2	57407539	57407739	+	798.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	169257.0	NM_010274	14571.0	Mm.3711	NM_010274	ENSMUSG00000026827	Gpd2	AA408484|AI448216|AU021455|AW494132|GPDH|Gdm1|Gpd-m|Gpdh-m|TISP38	glycerol phosphate dehydrogenase 2, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-55415910-3	chr12	55415805	55416005	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310583, intron 6 of 6)	intron (NM_001310583, intron 6 of 6)	17080.0	NM_011968	26443.0	Mm.30210	NM_011968	ENSMUSG00000021024	Psma6	IOTA	proteasome (prosome, macropain) subunit, alpha type 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-20888185-3	chr18	20888092	20888292	+	803.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177038, intron 1 of 28)	MTEa-int|LTR|ERVL-MaLR	7886.0	NM_029491	75964.0	Mm.273769	NM_029491	ENSMUSG00000033382	Trappc8	5033403J15Rik|AI845423|D030074E01Rik|Trs85|mKIAA1012	trafficking protein particle complex 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70437645-2	chr11	70437545	70437745	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_106064)	promoter-TSS (NR_106064)	-610.0	NR_106064	102465670.0		NR_106064	ENSMUSG00000099109	Mir7115	Gm27902|mmu-mir-7115	microRNA 7115	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3644168-2	chr12	3644068	3644268	+	582.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162465, intron 7 of 17)	intron (NM_001162465, intron 7 of 17)	71184.0	NM_007886	13528.0	Mm.286202	NM_007886	ENSMUSG00000071454	Dtnb	-	dystrobrevin, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-57530826-4	chr8	57530745	57530945	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167981, intron 11 of 11)	Lx7|LINE|L1	19002.0	NM_008252	97165.0	Mm.276881	NM_008252	ENSMUSG00000054717	Hmgb2	C80539|HMG-2|Hmg2	high mobility group box 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-30914942-2	chr5	30914842	30915042	+	570.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133918, intron 1 of 7)	intron (NM_133918, intron 1 of 7)	1156.0	NM_133918	100952.0	Mm.286375	NM_133918	ENSMUSG00000029163	Emilin1	5830419M17Rik|AW229038|BB105748|EMILIN-1|gp115	elastin microfibril interfacer 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44823594-2	chr7	44823505	44823705	+	586.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001171024, intron 1 of 8)	intron (NM_001171024, intron 1 of 8)	-6947.0	NR_033136	107503.0	Mm.389890	NM_030693	ENSMUSG00000038539	Atf5	AFTA|Atf7|Atfx|ODA-10	activating transcription factor 5	protein-coding	1.33198269649945	0.881262326625345	1.27065017774317	0.656283587455386	0.804488177621184	0.676857663908209	1.16127202767396	1.33797365496355	-0.193352119429918	0.896087935787593	0.998431161219273
Merged-chr2-167072023-5	chr2	167071945	167072145	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6752.0	NR_028540	100217443.0		NR_028540		Snord12	MBII-99	small nucleolar RNA, C/D box 12	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127573777-2	chr7	127573677	127573877	+	806.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360741, intron 1 of 8)	intron (NM_001360741, intron 1 of 8)	429.0	NM_026888	68961.0	Mm.274473	NM_026888	ENSMUSG00000030815	Phkg2	1500017I02Rik	phosphorylase kinase, gamma 2 (testis)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-80097692-4	chr15	80097589	80097789	+	883.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207708, intron 1 of 3)	intron (NM_207708, intron 1 of 3)	6355.0	NM_207708	20972.0	Mm.230301	NM_009303	ENSMUSG00000022415	Syngr1	R75468|Syngr1b|p29	synaptogyrin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34023217-2	chr17	34023188	34023388	+	803.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_009066, intron 3 of 6)	intron (NM_009066, intron 3 of 6)	1392.0	NM_009066	19763.0	Mm.20343	NM_009066	ENSMUSG00000024325	Ring1	Ring1A	ring finger protein 1	protein-coding	1.31771357218764	1.52062272410954	0.720746685635677	0.706827014617811	0.890370729266317	1.53467538520143	0.724664684291062	2.19099648204129	1.21643698522154	0.39814578913939	0.884402587897014
Merged-chr8-105523433-2	chr8	105523333	105523533	+	704.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008289, exon 5 of 5)	3' UTR (NM_008289, exon 5 of 5)	4687.0	NM_008289	15484.0	Mm.5079	NM_008289	ENSMUSG00000031891	Hsd11b2	11HSD2	hydroxysteroid 11-beta dehydrogenase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-92489234-3	chr5	92489163	92489363	+	945.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007644, intron 1 of 11)	intron (NM_007644, intron 1 of 11)	16394.0	NM_007644	12492.0	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171247665-3	chr1	171247585	171247785	+	997.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153064)	promoter-TSS (NM_153064)	-563.0	NM_153064	226646.0	Mm.21669	NM_153064	ENSMUSG00000013593	Ndufs2	CI-49kD	NADH dehydrogenase (ubiquinone) Fe-S protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-85670941-2	chr11	85670841	85671041	+	858.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_138681, intron 24 of 25)	intron (NM_138681, intron 24 of 25)	48803.0	NR_045875	71489.0	Mm.442482	NR_045875	ENSMUSG00000086199	Bcas3os1	8430403D17Rik	breast carcinoma amplified sequence 3, opposite strand 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-49472874-3	chr2	49472769	49472969	+	909.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172663, intron 1 of 13)	ORR1D2|LTR|ERVL-MaLR	21383.0	NM_172663	227867.0	Mm.29167	NM_172663	ENSMUSG00000069495	Epc2	5830499L14|D2Ertd694e	enhancer of polycomb homolog 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-95663188-2	chr1	95663088	95663288	+	993.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159745, intron 1 of 3)	intron (NM_001159745, intron 1 of 3)	4406.0	NM_009183	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-34689220-2	chr6	34689120	34689320	+	878.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347100, intron 3 of 13)	intron (NM_001347100, intron 3 of 13)	-20224.0	NM_145575	109624.0	Mm.308134	NM_145575	ENSMUSG00000029761	Cald1	4833423D12Rik|AI195384|AV071549|AW536160|C920027I18Rik	caldesmon 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-17772984-2	chr15	17772884	17773084	+	556.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2B2|LINE|L1	596643.0	NR_045711	70886.0	Mm.399021	NR_045711	ENSMUSG00000098150	4921515E04Rik	-	RIKEN cDNA 4921515E04 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-72448184-2	chr9	72448084	72448284	+	934.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008613, intron 4 of 9)	intron (NM_008613, intron 4 of 9)	9655.0	NM_008613	17427.0	Mm.387671	NM_008613	ENSMUSG00000032221	Mns1	AW546487	meiosis-specific nuclear structural protein 1	protein-coding	0.992479540758239	0.589341416295411	1.53115036049256	0.922004659041909	1.53647588990973	0.59189558437083	0.580443833639501	0.765329102058681	-0.444777698561975	0.77836178688734	0.998431161219273
Merged-chr2-160211875-4	chr2	160211794	160211994	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	115600.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-53926123-2	chr10	53926023	53926223	+	546.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008548, intron 8 of 12)	B3|SINE|B2	149673.0	NM_008548	17155.0	Mm.117294	NM_008548	ENSMUSG00000003746	Man1a	Man1a1|PCR1	mannosidase 1, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-65416408-4	chr18	65416281	65416481	+	859.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_105742, intron 3 of 6)	intron (NR_105742, intron 3 of 6)	-14616.0	NM_172833	240354.0	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-73001734-4	chr9	73001614	73001814	+	948.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001114328, exon 5 of 8)	exon (NM_001114328, exon 5 of 8)	16210.0	NM_001286544	72278.0	Mm.268475	NM_028181	ENSMUSG00000034563	Ccpg1	1700030B06Rik|1810073J13Rik|9430028F23Rik|AI426686|AI875170|CPR8|D9Ertd392e	cell cycle progression 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165316285-2	chr2	165316185	165316385	+	714.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302754)	promoter-TSS (NM_001302754)	66.0	NM_001302754	140579.0	Mm.35064	NM_080287	ENSMUSG00000017670	Elmo2	1190002F24Rik|CED-12	engulfment and cell motility 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-59214142-6	chr6	59214054	59214254	+	830.194458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5284.0	NM_001081145	68140.0	Mm.25843	NM_001081145	ENSMUSG00000049232	Tigd2	3632410O17Rik	tigger transposable element derived 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99698839-4	chr15	99698757	99698957	+	858.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001289791, exon 9 of 10)	exon (NM_001289791, exon 9 of 10)	-3430.0	NM_031842	83797.0	Mm.273756	NM_031842	ENSMUSG00000023018	Smarcd1	AA407987|Baf60a|D15Kz1	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-116184102-3	chr3	116183987	116184187	+	913.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54399.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-45752426-4	chr11	45752321	45752521	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55662.0	NR_045876	100009664.0	Mm.415439	NR_045876		F630206G17Rik	-	RIKEN cDNA F630206G17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-93458861-4	chr2	93458762	93458962	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040532, intron 2 of 4)	intron (NR_040532, intron 2 of 4)	2989.0	NM_001271461	12521.0	Mm.4261	NM_007656	ENSMUSG00000027215	Cd82	AA682076|AL023070|C33|IA4|Kai1|Tspan27	CD82 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-51977600-4	chr9	51977506	51977706	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14004.0	NM_007996	14148.0	Mm.1061	NM_007996	ENSMUSG00000032051	Fdx1	-	ferredoxin 1	protein-coding	0.697528248519162	0.275649737938466	1.24516024352177	0.258061916269424	0.246973950524431	0.27785212138289	1.26136259681615	0.259418195495101	-0.372881812628918	0.849351553357834	1
Merged-chr7-4494309-4	chr7	4494193	4494393	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029834, intron 3 of 21)	intron (NM_029834, intron 3 of 21)	7387.0	NM_029834	232807.0	Mm.360391	NM_029834	ENSMUSG00000019254	Ppp1r12c	2410197A17Rik|AI839747|B430101M08|Mbs85	protein phosphatase 1, regulatory (inhibitor) subunit 12C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-153901462-4	chr1	153901282	153901482	+	892.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008131, intron 1 of 6)	intron (NM_008131, intron 1 of 6)	1453.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71670211-2	chr17	71670111	71670311	+	642.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3050.0	NM_177087	320159.0	Mm.187372	NM_177087	ENSMUSG00000045761	Togaram2	4632412N22Rik|Fam179a	TOG array regulator of axonemal microtubules 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-67112194-2	chr11	67112094	67112294	+	590.866699	f1_balb.idr|f1_c57bl6.idr	TTS (NR_038055)	TTS (NR_038055)	7886.0	NR_038055	74184.0	Mm.162554	NR_038055	ENSMUSG00000087410	2310065F04Rik	linc-Myh	RIKEN cDNA 2310065F04 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-60565559-2	chr1	60565459	60565659	+	705.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001045513, intron 1 of 13)	intron (NM_001045513, intron 1 of 13)	1206.0	NM_001045513	77300.0	Mm.440325	NM_001045513	ENSMUSG00000026014	Raph1	9430025M21Rik|C730009O10Rik|Lpd	Ras association (RalGDS/AF-6) and pleckstrin homology domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-148468271-2	chr2	148468171	148468371	+	725.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24736.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-13525431-2	chr13	13525331	13525531	+	748.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64978.0	NM_010748	17101.0	Mm.342337	NM_010748	ENSMUSG00000019726	Lyst	D13Sfk13|beige|bg	lysosomal trafficking regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101051457-4	chr7	101051341	101051541	+	947.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39388.0	NM_001302346	18442.0	Mm.3000	NM_008773	ENSMUSG00000032860	P2ry2	P2U1|P2Y2	purinergic receptor P2Y, G-protein coupled 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105279664-2	chr8	105279564	105279764	+	754.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001166394)	TTS (NM_001166394)	3217.0	NM_030152	78688.0	Mm.475715	NM_030152	ENSMUSG00000014776	Nol3	ARC|B430311C09Rik|MYC|NOP|Nop30	nucleolar protein 3 (apoptosis repressor with CARD domain)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-40382172-2	chr12	40382072	40382272	+	822.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_178845, intron 1 of 11)	MTC|LTR|ERVL-MaLR	63618.0	NM_172575	246196.0	Mm.26852	NM_172575	ENSMUSG00000055917	Zfp277	2410017E24Rik|NIRF4	zinc finger protein 277	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120534466-2	chr11	120534366	120534566	+	819.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008101, intron 1 of 13)	intron (NM_008101, intron 1 of 13)	3739.0	NM_008101	14527.0	Mm.22329	NM_008101	ENSMUSG00000025127	Gcgr	GR	glucagon receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-29026426-4	chr15	29026330	29026530	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	686974.0	NR_039542	100628607.0		NR_039542	ENSMUSG00000092639	Mir3964	mmu-mir-3964|mu-mir-3964	microRNA 3964	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-17752625-2	chr9	17752525	17752725	+	611.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-539642.0	NM_025844	66917.0	Mm.103534	NM_025844	ENSMUSG00000001774	Chordc1	1110001O09Rik|AA409036|Chp-1|morgana	cysteine and histidine-rich domain (CHORD)-containing, zinc-binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-84203340-3	chr17	84203274	84203474	+	783.31665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183021, intron 36 of 37)	intron (NM_183021, intron 36 of 37)	-15427.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-47320105-1	chr6	47320005	47320205	+	593.0	f0_balb.idr	Intergenic	URR1B|DNA|hAT-Charlie	75709.0	NM_025771	66797.0	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-34862064-2	chr6	34861964	34862164	+	578.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1082.0	NM_197986	68487.0	Mm.248440	NM_197986	ENSMUSG00000057137	Tmem140	1110007F12Rik	transmembrane protein 140	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-35740047-4	chr18	35739876	35740076	+	809.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001289592, exon 2 of 8)	5' UTR (NM_001289592, exon 2 of 8)	578.0	NM_028261	72512.0	Mm.45995	NM_028261	ENSMUSG00000024349	Tmem173	2610307O08Rik|ERIS|MPYS|Mita|STING	transmembrane protein 173	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-118428712-4	chr4	118428597	118428797	+	958.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039175, intron 1 of 6)	intron (NM_001039175, intron 1 of 6)	604.0	NM_019422	54325.0	Mm.282096	NM_019422	ENSMUSG00000006390	Elovl1	AA407424|BB151133|Ssc1	elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 1	protein-coding	1.01209761262675	0.73625736145111	0.723458061428865	1.32781540352599	1.26070947888214	0.73911446791713	1.50083460835396	1.71410211337316	1.57827399759128	0.281404921652319	0.784196698058662
Merged-chr4-59454239-1	chr4	59454139	59454339	+	909.0	f0_balb.idr	Intergenic	Intergenic	-15606.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-21173213-2	chr13	21173113	21173313	+	867.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6718.0	NM_009054	19720.0	Mm.314056	NM_009054	ENSMUSG00000021326	Trim27	AW538890|Gm19403|Rfp	tripartite motif-containing 27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-24807992-2	chr13	24807892	24808092	+	558.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_024473, intron 3 of 4)	intron (NM_024473, intron 3 of 4)	6335.0	NM_024473	79555.0	Mm.266668	NM_024473	ENSMUSG00000019132	BC005537	8030460C05Rik|C78201	cDNA sequence BC005537	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-121336316-2	chr6	121336216	121336416	+	641.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144512, intron 13 of 14)	intron (NM_144512, intron 13 of 14)	-6760.0	NM_001347433	14411.0	Mm.274506	NM_133661	ENSMUSG00000030109	Slc6a12	BGT1|GAT-2|GAT2|Gabt2	solute carrier family 6 (neurotransmitter transporter, betaine/GABA), member 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-10723334-2	chr18	10723234	10723434	+	749.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	-2291.0	NM_144860	225164.0	Mm.21500	NM_144860	ENSMUSG00000024294	Mib1	DIP-1|E430019M12Rik|Mib|mKIAA1323	mindbomb E3 ubiquitin protein ligase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34094661-2	chr17	34094561	34094761	+	642.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008206, intron 3 of 4)	intron (NM_008206, intron 3 of 4)	648.0	NR_046183	414076.0	Mm.473092	NR_046183	ENSMUSG00000098197	BC051537	-	cDNA sequence BC051537	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-145259771-2	chr4	145259671	145259871	+	643.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-12901.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-82683580-1	chr10	82683480	82683680	+	877.0	f1_balb.idr	intron (NM_029102, intron 1 of 9)	B3|SINE|B2	7070.0	NM_029102	74782.0	Mm.191281	NM_029102	ENSMUSG00000020251	Glt8d2	1110021D20Rik	glycosyltransferase 8 domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-34049974-2	chr4	34049874	34050074	+	706.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290443)	promoter-TSS (NM_001290443)	91.0	NM_001290443	67652.0	Mm.55848	NM_026293	ENSMUSG00000028264	Spaca1	1700124L11Rik|4930540L03Rik	sperm acrosome associated 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-23006426-4	chr2	23006317	23006517	+	975.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077190, intron 1 of 10)	Lx8|LINE|L1	33824.0	NM_001077192	11308.0	Mm.205647	NM_007380	ENSMUSG00000058835	Abi1	E3B1|NAP1|Ssh3bp1|abi-1	abl-interactor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-29070799-4	chr17	29070712	29070912	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_036469, intron 1 of 1)	intron (NR_036469, intron 1 of 1)	8314.0	NR_036469	100504267.0	Mm.438550	NR_036469	ENSMUSG00000085912	Trp53cor1	Gm16197|linc-p21|lincRNA-p21	tumor protein p53 pathway corepressor 1	ncRNA	4.75370246542775	3.50672596362122	3.6815252685691	3.73972086763899	3.9095659959129	4.43366561341452	5.43060390348446	4.72425594455844	0.896270319163708	0.06334074416263	0.374981372596991
Merged-chr11-97198800-1	chr11	97198700	97198900	+	552.0	f1_c57bl6.idr	Intergenic	B3|SINE|B2	-10908.0	NM_008379	16211.0	Mm.251013	NM_008379	ENSMUSG00000001440	Kpnb1	AA409963|IPOB|Impnb	karyopherin (importin) beta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3875156-4	chr4	3875014	3875214	+	878.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-3009.0	NM_020021	17451.0	Mm.459300	NM_020021	ENSMUSG00000078365	Mos	c-mos	Moloney sarcoma oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-129404470-2	chr6	129404370	129404570	+	583.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019985, intron 5 of 5)	L1_Mus4|LINE|L1	-4392.0	NM_001205363	232414.0	Mm.391518	NM_172732	ENSMUSG00000046080	Clec9a	9830005G06Rik|DNGR-1	C-type lectin domain family 9, member a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-121180514-2	chr1	121180414	121180614	+	875.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	93109.0	NR_110450	98452.0	Mm.131017	NR_038008	ENSMUSG00000097881	Celrr	AI848258|B230209K01Rik|Celr|Gm818	cerebellum expressed regulatory RNA	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-128840568-4	chr4	128840436	128840636	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34424.0	NM_001081098	230761.0	Mm.22616	NM_001081098	ENSMUSG00000028799	Zfp362	-	zinc finger protein 362	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128395492-4	chr2	128395352	128395552	+	949.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028591, intron 1 of 1)	intron (NR_028591, intron 1 of 1)	33899.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-76565529-4	chr5	76565432	76565632	+	971.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359370, intron 17 of 19)	B3A|SINE|B2	-26182.0	NM_199032	381644.0	Mm.332452	NM_199032	ENSMUSG00000036403	Cep135	BC062951|Cep4|Gm1044	centrosomal protein 135	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-122302979-2	chr14	122302876	122303076	+	713.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_029556, intron 1 of 7)	intron (NM_029556, intron 1 of 7)	-69338.0	NR_015532	68245.0	Mm.443285	NR_015532	ENSMUSG00000100585	1700108J01Rik	-	RIKEN cDNA 1700108J01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-116458392-2	chr7	116458292	116458492	+	603.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur3|SINE|Alu	-14934.0	NM_011083	18704.0	Mm.3810	NM_011083	ENSMUSG00000030660	Pik3c2a	Cpk-m|PI3KC2	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-63043708-3	chr9	63043531	63043731	+	718.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62752.0	NM_019663	56469.0	Mm.431253	NM_019663	ENSMUSG00000032405	Pias1	2900068C24Rik|Ddxbp1|GBP	protein inhibitor of activated STAT 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30678219-2	chr2	30678119	30678319	+	685.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_136917)	promoter-TSS (NR_136917)	-208.0	NR_136917	665635.0	Mm.450149	NR_136917		Gm14486	-	predicted gene 14486	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-37557914-4	chr13	37557825	37558025	+	892.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	212580.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-90135311-2	chr7	90135211	90135411	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360867, intron 1 of 19)	intron (NM_001360867, intron 1 of 19)	5098.0	NM_001252520	233489.0	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	0.149195057970242	-0.0877630170064139	-0.0922393579300128	-0.0956809592651733	0.35396600619469	-0.0867515388425249	0.456911264686432	0.0616765633643829	2.22905947618571	0.317030271027432	1
Merged-chr10-34137661-2	chr10	34137561	34137761	+	869.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9689.0	NM_175449	215900.0	Mm.34479	NM_175449	ENSMUSG00000046031	Fam26f	A630077B13Rik|Calhm6	family with sequence similarity 26, member F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-164009233-3	chr2	164009120	164009320	+	873.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018753, intron 1 of 5)	intron (NM_018753, intron 1 of 5)	14023.0	NM_018753	54401.0	Mm.34319	NM_018753	ENSMUSG00000018326	Ywhab	1300003C17Rik|14-3-3b	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	protein-coding	-0.114385716137356	-0.54250818444639	-0.545648858419939	-0.2663095045333	-0.551444165561976	-0.541797554180193	-0.544957830050054	-0.26214238529372	-1.3254179229069	0.622296551890914	1
Merged-chr9-118506907-6	chr9	118506793	118506993	+	894.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018748, intron 1 of 23)	CpG	575.0	NM_018748	54214.0	Mm.10409	NM_018748	ENSMUSG00000038708	Golga4	AI225887|AU019508|Olp-1	golgi autoantigen, golgin subfamily a, 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-58720223-4	chr1	58720113	58720313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355056, intron 1 of 8)	intron (NM_001355056, intron 1 of 8)	6927.0	NM_001355056	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53109458-1	chr4	53109358	53109558	+	772.0	f0_balb.idr	intron (NM_013454, intron 5 of 49)	intron (NM_013454, intron 5 of 49)	50437.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43455409-2	chr4	43455309	43455509	+	627.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007654)	promoter-TSS (NM_007654)	-783.0	NM_007654	12517.0	Mm.188157	NM_007654	ENSMUSG00000028459	Cd72	CD72c|Ly-19|Ly-32|Ly-m19|Lyb-2	CD72 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21072807-2	chr9	21072707	21072907	+	583.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039824, intron 3 of 4)	B1F|SINE|Alu	707.0	NM_001039824	68165.0	Mm.490294	NM_001039824	ENSMUSG00000079677	Fdx1l	B230118G17Rik|Fdx2	ferredoxin 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-52577833-4	chr2	52577714	52577914	+	841.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037099, intron 2 of 13)	intron (NM_001037099, intron 2 of 13)	-19203.0	NM_001285427	12298.0	Mm.330223	NM_146123	ENSMUSG00000017412	Cacnb4	3110038O15Rik|Cchb4|lh	calcium channel, voltage-dependent, beta 4 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-142871139-2	chr5	142871039	142871239	+	708.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001033312)	TTS (NM_001033312)	24099.0	NM_001033312	231863.0	Mm.89753	NM_001033312	ENSMUSG00000066640	Fbxl18	AI427077|B130019G13Rik|C330021B20Rik	F-box and leucine-rich repeat protein 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-19948405-2	chr14	19948305	19948505	+	681.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285909, intron 3 of 5)	intron (NM_001285909, intron 3 of 5)	28288.0	NM_001285911	14702.0	Mm.41737	NM_010315	ENSMUSG00000043004	Gng2	-	guanine nucleotide binding protein (G protein), gamma 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-156986432-4	chr1	156986317	156986517	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46791.0	NM_001357391	78255.0	Mm.28376	NM_023884	ENSMUSG00000026594	Ralgps2	1810020P17Rik|2210408F11Rik|4921528G01Rik|9130014M22Rik|AU043409|AW046161	Ral GEF with PH domain and SH3 binding motif 2	protein-coding	6.28026044460264	6.45071043836087	6.82563258045003	6.48075978425499	6.57221396572075	6.63786571785173	6.75325835304946	6.62432005667985	0.136095855104431	0.486626456730197	0.932503166794264
Merged-chr7-139390603-2	chr7	139390503	139390703	+	854.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183144, intron 1 of 15)	intron (NM_183144, intron 1 of 15)	1494.0	NM_001127363	212111.0	Mm.28308	NM_183144	ENSMUSG00000025477	Inpp5a	-	inositol polyphosphate-5-phosphatase A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-115880895-2	chr4	115880795	115880995	+	608.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3505.0	NM_001039124	654462.0	Mm.388913	NM_001039124	ENSMUSG00000073774	Kncn	Kino|L5	kinocilin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19496388-4	chr7	19496304	19496504	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11927.0	NM_177692	232946.0	Mm.64557	NM_177692	ENSMUSG00000057667	Bloc1s3	BC043666|Blos3|E230011O18|rp	biogenesis of lysosomal organelles complex-1, subunit 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-132121407-2	chr1	132121307	132121507	+	900.208374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008795, intron 4 of 15)	intron (NM_008795, intron 4 of 15)	18278.0	NM_008795	18557.0	Mm.28130	NM_008795	ENSMUSG00000026437	Cdk18	AA682070|Ctk18|Pctk3	cyclin-dependent kinase 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45798355-3	chr7	45798164	45798364	+	753.233337	f1_balb.idr|f1_c57bl6.idr	exon (NM_001290990, exon 12 of 15)	exon (NM_001290990, exon 12 of 15)	12884.0	NM_001290990	381983.0	Mm.44928	NM_001005511	ENSMUSG00000062044	Lmtk3	BC059845|aatyk3	lemur tyrosine kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-130082617-2	chr5	130082517	130082717	+	576.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001130476, intron 1 of 5)	B4|SINE|B4	3247.0	NM_001130476	22021.0	Mm.332720	NM_013837	ENSMUSG00000034118	Tpst1	R75054|Tango13a	protein-tyrosine sulfotransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-98977059-2	chr10	98976959	98977159	+	769.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359507, intron 2 of 21)	intron (NM_001359507, intron 2 of 21)	61907.0	NM_026482	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141017522-2	chr7	141017422	141017622	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033632)	promoter-TSS (NM_001033632)	-630.0	NM_001033632	213002.0	Mm.276440	NM_001033632	ENSMUSG00000059108	Ifitm6	A330075D07|Dspa2f|Fgls5|fragilis5	interferon induced transmembrane protein 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71633342-4	chr8	71633227	71633427	+	965.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029873, intron 39 of 41)	intron (NM_001029873, intron 39 of 41)	-2221.0	NR_106035	102466799.0		NR_106035	ENSMUSG00000098976	Mir6769b	Gm27546|mmu-mir-6769b	microRNA 6769b	ncRNA	0.859175846907196	1.13656022557728	0.463833504809796	0.456562345573485	0.609377392022327	1.36856292123538	0.664496484792561	0.642052487590722	0.506831264848626	0.750748452659156	1
Merged-chr12-85437744-4	chr12	85437649	85437849	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36141.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-56703672-4	chr13	56703578	56703778	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164042)	promoter-TSS (NM_001164042)	10.0	NM_001164042	17129.0	Mm.272920	NM_008541	ENSMUSG00000021540	Smad5	1110051M15Rik|AI451355|Dwf-C|Madh5|MusMLP	SMAD family member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-54606035-4	chr14	54605937	54606137	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028890)	promoter-TSS (NM_028890)	-129.0	NM_028890	74359.0	Mm.79815	NM_028890	ENSMUSG00000022179	4931414P19Rik	Rtfc	RIKEN cDNA 4931414P19 gene	protein-coding	2.75469674234305	2.46640970141287	2.47714794301791	1.81614225827243	1.87492522648447	1.27010826960491	1.23951054877123	2.32199246378145	-1.60407889726063	0.113640771005826	0.528200660070208
Merged-chr14-103051588-4	chr14	103051482	103051682	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008392, intron 4 of 4)	intron (NM_008392, intron 4 of 4)	4570.0	NM_008392	16365.0	Mm.4662	NM_008392	ENSMUSG00000022126	Acod1	AI323667|CAD|Irg1	aconitate decarboxylase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-156674373-4	chr1	156674283	156674483	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023141)	promoter-TSS (NM_023141)	-44.0	NM_023141	30935.0	Mm.206737	NM_023141	ENSMUSG00000060519	Tor3a	Adir	torsin family 3, member A	protein-coding	5.11076139753644	4.31667341196326	4.17169308817064	4.80947229912013	5.46231621986632	5.26642333982746	4.92901881628099	4.26378652841632	0.468263316763782	0.226947844410247	0.71997232966636
Merged-chr15-72838434-4	chr15	72838324	72838524	+	992.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164641, intron 17 of 17)	MTEa|LTR|ERVL-MaLR	-28100.0	NR_002864	353342.0	Mm.440245	NR_002864	ENSMUSG00000106847	Peg13	-	paternally expressed 13	ncRNA	2.7904810377031	3.1293162023872	3.1225907987057	3.28252374166646	3.45813230154693	2.63840088251745	3.47243111566299	2.47042829526165	0.0167282330370849	0.979361663552044	0.998431161219273
Merged-chr10-121471756-4	chr10	121471676	121471876	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138956, intron 1 of 4)	intron (NM_138956, intron 1 of 4)	4474.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	5.02302672955991	5.28388491507623	5.01320965980698	4.99724831765166	5.17286914120219	5.31803194900658	5.69455219406364	5.92924939499741	0.555184263837236	0.0623029003418234	0.370666214033651
Merged-chr15-41657171-3	chr15	41657048	41657248	+	907.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152565, intron 3 of 17)	intron (NR_152565, intron 3 of 17)	-131847.0	NM_001358976	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-164061450-4	chr1	164061337	164061537	+	847.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011346)	promoter-TSS (NM_011346)	-639.0	NM_001164059	20343.0	Mm.1461	NM_011346	ENSMUSG00000026581	Sell	AI528707|CD62L|L-selectin|LECAM-1|Lnhr|Ly-22|Ly-m22|Lyam-1|Lyam1	selectin, lymphocyte	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-72123814-4	chr1	72123713	72123913	+	791.645813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	88494.0	NM_001005423	381269.0	Mm.422636	NM_001005423	ENSMUSG00000039395	Mreg	Gm974|Wdt2|dsu	melanoregulin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-47743105-1	chr9	47743005	47743205	+	547.0	f1_balb.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	75103.0	NR_046048	100038460.0	Mm.447649	NR_046048		Gm10677	-	predicted gene 10677	ncRNA	1.91816421056834	1.47172917750688	1.17969607721532	1.75470525733266	1.52177400531318	2.77119409052611	2.51976338328665	2.25712698898741	1.91668735682308	0.0598211127245514	0.362498564835019
Merged-chr13-97442508-4	chr13	97442403	97442603	+	972.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110432, intron 1 of 1)	intron (NR_110432, intron 1 of 1)	7533.0	NR_110432	100039691.0	Mm.219358	NR_110430	ENSMUSG00000078952	Lncenc1	Gm11019|Gm2373|Lincenc1|Platr18|linc-Enc1	long non-coding RNA, embryonic stem cells expressed 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94478018-4	chr10	94477929	94478129	+	997.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 2 of 4)	intron (NM_001359762, intron 2 of 4)	-36828.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-101971608-1	chr5	101971508	101971708	+	995.0	f1_balb.idr	intron (NM_172882, intron 4 of 66)	intron (NM_172882, intron 4 of 66)	98313.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	1.84789073084509	1.6739287491539	1.13231741232854	0.89288585484544	1.22675720010042	0.928952325792286	2.12739828648235	1.56996605518615	0.320751362673035	0.803157059516799	0.998431161219273
Merged-chr3-79489009-2	chr3	79488909	79489109	+	592.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001162999, exon 12 of 17)	exon (NM_001162999, exon 12 of 17)	78670.0	NM_001162999	329679.0	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-25282405-2	chr12	25282305	25282505	+	599.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	153231.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-121717381-2	chr9	121717281	121717481	+	994.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER4B|LTR|ERVK	-1800.0	NM_010918	18087.0	Mm.32842	NM_010918	ENSMUSG00000032525	Nktr	5330401F18Rik|D9Wsu172e	natural killer tumor recognition sequence	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-140831636-3	chr7	140831539	140831739	+	650.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR21|LTR|ERVK	-3499.0	NM_001347605	76974.0	Mm.272359	NM_029821	ENSMUSG00000025481	Urah	1190003J15Rik|2810420C16Rik|HIUHase	urate (5-hydroxyiso-) hydrolase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-6403605-3	chr15	6403510	6403710	+	715.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037905, intron 1 of 13)	(TTTTG)n|Simple_repeat|Simple_repeat	16862.0	NM_001310446	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70446877-4	chr11	70446779	70446979	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5052.0	NM_025397	66172.0	Mm.46424	NM_025397	ENSMUSG00000018923	Med11	1110030J09Rik|AI465144|AW545069	mediator complex subunit 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-40053364-2	chr10	40053264	40053464	+	857.2999880000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 4 of 5)	intron (NM_001114332, intron 4 of 5)	-28096.0	NM_144821	215929.0	Mm.55513	NM_144821	ENSMUSG00000038522	Mfsd4b1	AI317395|AI482555|Naglt1a	major facilitator superfamily domain containing 4B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-73305169-2	chr17	73305069	73305269	+	664.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	94127.0	NM_001033444	381122.0	Mm.81496	NM_001033444	ENSMUSG00000043705	Capn13	CANP 13|Gm943	calpain 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-64210636-3	chr7	64210512	64210712	+	763.333374	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039104, intron 9 of 26)	intron (NM_001039104, intron 9 of 26)	4806.0	NR_029805	387207.0		NR_029805	ENSMUSG00000065585	Mir211	Mirn211|mir-211|mmu-mir-211	microRNA 211	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-24300948-4	chr7	24300819	24301019	+	963.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001199321)	TTS (NM_001199321)	-1370.0	NM_009561	22719.0	Mm.12832	NM_009561	ENSMUSG00000050605	Zfp61	-	zinc finger protein 61	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-87186430-2	chr1	87186330	87186530	+	675.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_027084, exon 8 of 13)	exon (NM_027084, exon 8 of 13)	3116.0	NM_027084	69453.0	Mm.84618	NM_027084	ENSMUSG00000036480	Prss56	1700027L20Rik	protease, serine 56	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-110976909-2	chr12	110976809	110977009	+	787.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001361917, exon 3 of 3)	exon (NM_001361917, exon 3 of 3)	1709.0	NM_001361917	74251.0	Mm.250989	NM_175207	ENSMUSG00000037904	Ankrd9	2500003O20Rik	ankyrin repeat domain 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-156558716-4	chr1	156558620	156558820	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009595)	promoter-TSS (NM_009595)	-67.0	NM_009595	11352.0	Mm.329515	NM_009595	ENSMUSG00000026596	Abl2	AA536808|Abll|Arg	v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-21958278-4	chr6	21958178	21958378	+	852.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311061, intron 4 of 11)	intron (NM_001311061, intron 4 of 11)	8663.0	NM_023626	71777.0	Mm.39999	NM_023626	ENSMUSG00000029670	Ing3	1300013A07Rik|P47ING3	inhibitor of growth family, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-52167838-2	chr11	52167738	52167938	+	548.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-9931.0	NR_034155	257871.0	Mm.253576	NR_034155		Olfr1372-ps1	GA_x5J8B7TR6JS-3-632|MOR256-54P|NP_TR6JSE50FPA	olfactory receptor 1372, pseudogene 1	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-113515281-4	chr13	113515188	113515388	+	990.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12444.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-147825798-4	chr5	147825699	147825899	+	722.94165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34829.0	NM_025624	66537.0	Mm.332855	NM_025624	ENSMUSG00000029649	Pomp	2510048O06Rik|Ump1	proteasome maturation protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-121366671-3	chr10	121366582	121366782	+	941.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029364, intron 1 of 13)	PB1D9|SINE|Alu	1592.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	3.54790144974717	4.00877805753854	2.64711218038677	1.82842506794519	3.67572254163295	2.7672463710329	2.66936394439785	3.04287131166303	-0.244522167173052	0.738833564346088	0.998431161219273
Merged-chr3-58692265-4	chr3	58692146	58692346	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045167)	promoter-TSS (NR_045167)	142.0	NM_009174	20439.0	Mm.2847	NM_009174	ENSMUSG00000036432	Siah2	AA415433|Sinh2	siah E3 ubiquitin protein ligase 2	protein-coding	4.39724319829864	4.79309829044289	2.4403782754355	4.68939882815724	4.64788955699107	3.9244598755752	4.39364757332245	4.50753511344323	0.0804172234553721	0.874221809200796	0.998431161219273
Merged-chr2-6580320-4	chr2	6580266	6580466	+	907.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110232, intron 11 of 15)	intron (NM_001110232, intron 11 of 15)	141296.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-33246675-3	chr14	33246581	33246781	+	903.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153800, intron 2 of 10)	intron (NM_153800, intron 2 of 10)	29858.0	NM_153800	239027.0	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-125184079-3	chr8	125183960	125184160	+	728.733337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_174854, intron 9 of 12)	intron (NM_174854, intron 9 of 12)	129865.0	NM_174854	244667.0	Mm.233504	NM_170596	ENSMUSG00000043051	Disc1	-	disrupted in schizophrenia 1	protein-coding	1.51859443584574	1.85058995356609	1.29515231814354	2.22378208112616	1.38803733784865	2.31104053964726	1.49594726930989	1.2705699069593	-0.237278396226529	0.828271613308704	0.998431161219273
Merged-chr19-37561695-4	chr19	37561594	37561794	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175353, intron 1 of 21)	intron (NM_175353, intron 1 of 21)	11276.0	NM_175353	107371.0	Mm.24865	NM_175353	ENSMUSG00000053799	Exoc6	4833405E05Rik|AW413330|C430002C19|Sec15|Sec15l1|hbd|msec15	exocyst complex component 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120534156-2	chr8	120534056	120534256	+	716.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198671, intron 1 of 15)	intron (NM_198671, intron 1 of 15)	-1701.0	NM_001145897	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-89429481-4	chr15	89429377	89429577	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_004843, exon 1 of 27)	non-coding (NR_004843, exon 1 of 27)	450.0	NR_037154	12651.0	Mm.485045	NM_007692	ENSMUSG00000022617	Chkb	Chetk|Chkl|Ck|Ck/Ek|Ck/Ek-beta|Ckb|Ckekb|Ek	choline kinase beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44849651-1	chr9	44849551	44849751	+	544.0	f1_balb.idr	exon (NM_001357549, exon 3 of 36)	exon (NM_001357549, exon 3 of 36)	31623.0	NM_001357549	214162.0	Mm.2389	NM_001081049	ENSMUSG00000002028	Kmt2a	6430520K01|ALL-1|All1|Cxxc7|HRX|HTRX1|Mll|Mll1|mKIAA4050	lysine (K)-specific methyltransferase 2A	protein-coding	-1.43172712806865	-1.3992492906874	-1.40907085678131	-1.41713858359971	-0.932192548427885	-1.39712091634321	-1.40684746950024	-1.41569446435649	2.19283191591698	0.528233640655333	1
Merged-chr12-100203588-4	chr12	100203473	100203673	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001313934, intron 2 of 5)	intron (NM_001313934, intron 2 of 5)	3429.0	NM_001313934	12313.0	Mm.285993	NM_009790	ENSMUSG00000001175	Calm1	AI256814|AI327027|AI461935|AL024000|CaM|Calm|Cam1	calmodulin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55645202-2	chr19	55645102	55645302	+	619.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045318, intron 2 of 3)	B4|SINE|B4	57002.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124477342-4	chr5	124477246	124477446	+	972.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030259, intron 1 of 3)	B3|SINE|B2	889.0	NM_030259	80291.0	Mm.425280	NM_030259	ENSMUSG00000029401	Rilpl2	-	Rab interacting lysosomal protein-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-50276080-4	chr11	50275965	50276165	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175334, intron 1 of 4)	B4A|SINE|B4	16271.0	NM_175334	103806.0	Mm.51116	NM_175334	ENSMUSG00000050567	Maml1	AI644666|AW743257|D930008C07Rik|Mam-1|Mam1|mKIAA0200	mastermind like transcriptional coactivator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72616183-3	chr6	72616112	72616312	+	768.25	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009444, exon 2 of 4)	exon (NM_009444, exon 2 of 4)	536.0	NM_009444	22135.0	Mm.246563	NM_009444		Tgoln2	TGN38B|TGN41|TGN46|Ttgn2	trans-golgi network protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-83680685-2	chr7	83680585	83680785	+	888.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001360087, exon 5 of 19)	exon (NM_001360087, exon 5 of 19)	-25190.0	NM_001360089	16170.0	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3649204-4	chr4	3649109	3649309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7297.0	NR_040643	70143.0	Mm.417835	NR_040643	ENSMUSG00000085394	2210414B05Rik	-	RIKEN cDNA 2210414B05 gene	ncRNA	4.78639404682812	4.19660580279395	5.14081545734685	5.11178049331238	5.19732073763154	4.73714106933268	5.17567807286996	5.16542376531921	0.266949371474499	0.430759855522743	0.904384638339104
Merged-chr6-149189495-2	chr6	149189395	149189595	+	700.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113424)	promoter-TSS (NM_001113424)	-783.0	NM_001113424	232566.0	Mm.209147	NM_001113424	ENSMUSG00000068250	Amn1	5830467E07Rik|A230083D09|C730024G19Rik	antagonist of mitotic exit network 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-25200173-4	chr10	25200079	25200279	+	790.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347460)	promoter-TSS (NM_001347460)	-9.0	NM_001347460	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100712454-4	chr11	100712388	100712588	+	881.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020004)	promoter-TSS (NM_020004)	-21.0	NM_020004	14534.0	Mm.218837	NM_020004	ENSMUSG00000020918	Kat2a	1110051E14Rik|AW212720|Gcn5|Gcn5l2|mmGCN5	K(lysine) acetyltransferase 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-35666008-3	chr8	35665915	35666115	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081279, intron 2 of 2)	intron (NM_001081279, intron 2 of 2)	-76995.0	NR_040376	100504714.0	Mm.381744	NR_040376	ENSMUSG00000097357	Gm16793	-	predicted gene, 16793	ncRNA	4.18998854589712	4.24617398008377	4.90461487112107	4.81565922495168	6.71298476245307	6.52765267656676	6.21175490495441	6.69761416225122	2.22437285779321	8.1509634022894e-16	5.8677155340401e-13
Merged-chr13-24036483-3	chr13	24036479	24036679	+	702.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001311122, exon 33 of 38)	exon (NM_001311122, exon 33 of 38)	-45365.0	NM_145399	214189.0	Mm.255667	NM_145399	ENSMUSG00000021337	Scgn	-	secretagogin, EF-hand calcium binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-108637201-4	chr12	108637097	108637297	+	918.6749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163396, intron 2 of 14)	intron (NM_001163396, intron 2 of 14)	1444.0	NM_001163396	14026.0	Mm.238841	NM_007965	ENSMUSG00000021262	Evl	AI528774|b2b2600Clo	Ena-vasodilator stimulated phosphoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-6299681-4	chr11	6299613	6299813	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010956, intron 2 of 22)	B3|SINE|B2	7134.0	NM_001361902	18293.0	Mm.276348	NM_010956	ENSMUSG00000020456	Ogdh	2210403E04Rik|2210412K19Rik|AA409584|d1401|mKIAA4192	oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-20024167-2	chr4	20024067	20024267	+	739.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_015767, intron 4 of 4)	intron (NM_015767, intron 4 of 4)	15838.0	NM_015767	50500.0	Mm.24375	NM_015767	ENSMUSG00000073988	Ttpa	alpha-TTP	tocopherol (alpha) transfer protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-54699613-2	chr9	54699513	54699713	+	751.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021422)	promoter-TSS (NM_021422)	54.0	NM_021422	58233.0	Mm.489676	NM_021422	ENSMUSG00000032285	Dnaja4	1110021L12Rik|AV358213|Dj4|Hsj4|mmDjA4	DnaJ heat shock protein family (Hsp40) member A4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135569519-2	chr5	135569388	135569588	+	617.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_019577)	TTS (NM_019577)	3561.0	NM_019577	56221.0	Mm.31505	NM_019577	ENSMUSG00000004814	Ccl24	CKb-6|MPIF-2|Scya24	chemokine (C-C motif) ligand 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-121838829-4	chr5	121838748	121838948	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1989.0	NM_008507	16923.0	Mm.65493	NM_008507	ENSMUSG00000042594	Sh2b3	AI429800|Lnk	SH2B adaptor protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-121506808-4	chr10	121506687	121506887	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30537.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	4.75486568675785	4.58248959310399	3.74267612889421	5.10154912636272	4.78968896319553	4.61408218868887	3.77373727681885	5.20936148231186	0.0748961738049269	0.862023364332701	0.998431161219273
Merged-chr4-102576552-2	chr4	102576452	102576652	+	639.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019840, intron 6 of 14)	ID4|SINE|ID	6492.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	-0.381415144386402	-0.0276459033678364	-0.636456819003537	-0.639052863379702	-0.498848844893856	-0.632323249304378	-0.635713759674596	-0.638599706187425	-2.35984409931276	0.376900488497883	1
Merged-chr1-151568924-2	chr1	151568824	151569024	+	965.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A2|LTR|ERVL-MaLR	-2449.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-98297593-5	chr9	98297608	98297808	+	927.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357445, intron 1 of 3)	MTD|LTR|ERVL-MaLR	1138.0	NM_001357451	74080.0	Mm.294082	NM_144533	ENSMUSG00000032456	Nmnat3	4933408N02Rik|PNAT3	nicotinamide nucleotide adenylyltransferase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91456781-4	chr16	91456640	91456840	+	786.883301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MEc|LINE|L1	-8364.0	NR_077219	100503120.0	Mm.387130	NR_077219	ENSMUSG00000084866	A930006K02Rik	-	RIKEN cDNA A930006K02 gene	ncRNA	0.398418046018963	0.965296188638811	1.14942123018481	0.594132133660357	0.564996158348457	0.428954048984607	1.26221319290604	0.411738804521039	-0.410100298417337	0.810541767092186	1
Merged-chr13-59556775-2	chr13	59556675	59556875	+	866.833374	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001284219, exon 1 of 25)	5' UTR (NM_001284219, exon 1 of 25)	147.0	NM_001284219	67269.0	Mm.153008	NM_023328	ENSMUSG00000021557	Agtpbp1	1700020N17Rik|2310001G17Rik|2900054O13Rik|4930445M19Rik|5730402G09Rik|CCP1|Nna1|nmf243|pcd	ATP/GTP binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24674446-2	chr17	24674305	24674505	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001348231, intron 1 of 11)	intron (NM_001348231, intron 1 of 11)	4718.0	NM_183149	213753.0	Mm.219581	NM_183149	ENSMUSG00000041130	Zfp598	BC023040|Ntrap|Znf598	zinc finger protein 598	protein-coding	1.51847480718229	0.890335723859591	1.66247325914031	0.862647301440983	1.53240644605704	1.61997538504645	0.878280796014294	1.81173033841551	0.759352909413211	0.580001692577489	0.966158891419258
Merged-chr11-106740802-2	chr11	106740701	106740901	+	588.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-10425.0	NM_001271375	380732.0	Mm.343952	NM_001033435	ENSMUSG00000040528	Milr1	Allergin-1|Gm885|Mca32	mast cell immunoglobulin like receptor 1	protein-coding	-1.84371485578039	-1.81332821174849	-1.82251738371298	-1.83006564316449	-1.84158176955426	-1.81133687985023	-1.5312619047181	-1.82871450833159	1.60090129203521	0.64914985597185	1
Merged-chr4-3871293-2	chr4	3871193	3871393	+	843.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_020021, exon 1 of 1)	exon (NM_020021, exon 1 of 1)	812.0	NM_020021	17451.0	Mm.459300	NM_020021	ENSMUSG00000078365	Mos	c-mos	Moloney sarcoma oncogene	protein-coding	-0.780507411323491	-0.770201048850769	-0.0876146456965483	-0.776182298477195	-0.499830447499526	-0.769368699703383	-0.772832506895163	-0.775727174717696	-1.48766019666651	0.617325031110839	1
Merged-chr16-44032582-4	chr16	44032435	44032635	+	905.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359085, intron 2 of 16)	MTE2a|LTR|ERVL-MaLR	-4590.0	NM_001172107	207798.0	Mm.19316	NM_153528	ENSMUSG00000036292	Gramd1c	4921521N14Rik	GRAM domain containing 1C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135394574-4	chr5	135394479	135394679	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_148932)	promoter-TSS (NM_148932)	-33.0	NM_148932	107939.0	Mm.28399	NM_148932	ENSMUSG00000053293	Pom121	2610027A18Rik|C80273|mKIAA0618	nuclear pore membrane protein 121	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3683876-1	chr4	3683776	3683976	+	653.0	f0_balb.idr	intron (NM_001111096, intron 1 of 12)	PB1|SINE|Alu	5755.0	NM_010747	17096.0	Mm.317331	NM_010747	ENSMUSG00000042228	Lyn	AA407514|Hck-2|p53Lyn|p56Lyn	LYN proto-oncogene, Src family tyrosine kinase	protein-coding	0.564278083108373	0.22033915673159	0.214518877380939	0.620309760570369	0.465779864690354	0.823774777358043	0.215801850537715	0.371080706756519	0.470765728092767	0.800041908505349	1
Merged-chr7-122258160-3	chr7	122258072	122258272	+	878.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30953.0	NM_001316672	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-16279933-2	chr19	16279833	16280033	+	577.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008139, intron 2 of 6)	Lx3A|LINE|L1	35071.0	NR_105832	102465218.0		NR_105832	ENSMUSG00000098718	Mir496b	Gm28028|mmu-mir-496b	microRNA 496b	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100731298-3	chr7	100731226	100731426	+	743.299988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178764, intron 2 of 8)	intron (NM_178764, intron 2 of 8)	24691.0	NM_001362170	319604.0	Mm.260362	NM_178764	ENSMUSG00000029461	Fam168a	2610030B18Rik|B930006L02Rik|mKIAA0280	family with sequence similarity 168, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127932944-2	chr7	127932844	127933044	+	876.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001319147, exon 15 of 15)	exon (NM_001319147, exon 15 of 15)	-2831.0	NM_133351	76560.0	Mm.5875	NM_133351	ENSMUSG00000030800	Prss8	2410039E18Rik|AI313909|C79772|CAP1|fr|mCAP1	protease, serine 8 (prostasin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-8875413-4	chr10	8875302	8875502	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 1 of 19)	intron (NM_175155, intron 1 of 19)	10668.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	6.08981814897285	6.14907806234093	6.46786903741883	5.81927703081843	6.84117030033312	6.53045069028813	7.05392766354592	6.65288374476813	0.685897731926734	0.0013782414721802	0.025310420178395
Merged-chr15-76640023-4	chr15	76639923	76640123	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183091)	promoter-TSS (NM_183091)	-94.0	NM_183091	72749.0	Mm.358749	NM_183091	ENSMUSG00000059323	Tonsl	2810439M11Rik|Nfkbil2	tonsoku-like, DNA repair protein	protein-coding	4.51059134166188	4.83404851212604	5.06322959224434	5.26036312828638	5.063983126532	5.32456504236201	5.48155333703453	5.36721208110845	0.438617221534844	0.160881672999705	0.621061233156519
Merged-chr11-94133547-4	chr11	94133520	94133720	+	959.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-77834.0	NM_009427	22057.0	Mm.259673	NM_009427	ENSMUSG00000037573	Tob1	Tob|Trob	transducer of ErbB-2.1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-43564776-4	chr7	43564663	43564863	+	998.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001008549, exon 2 of 5)	5' UTR (NM_001008549, exon 2 of 5)	2393.0	NM_001008549	210104.0	Mm.333821	NM_001008549	ENSMUSG00000056592	Zfp658	-	zinc finger protein 658	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-110777252-3	chr12	110777162	110777362	+	641.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347428, intron 1 of 2)	B3|SINE|B2	39330.0	NM_001347428	69641.0	Mm.475762	NM_027149	ENSMUSG00000037957	Wdr20	2310040A13Rik|AI549910|Wdr20a	WD repeat domain 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-90743377-2	chr16	90743277	90743477	+	679.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029844, intron 1 of 2)	PB1|SINE|Alu	5053.0	NM_029844	77037.0	Mm.22455	NM_029844	ENSMUSG00000039956	Mrap	1110025G12Rik|C21ORF61|Falp|ORF61	melanocortin 2 receptor accessory protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-151860774-2	chr4	151860683	151860883	+	946.666626	f0_balb.idr|f0_c57.idr	intron (NM_001081557, intron 1 of 23)	intron (NM_001081557, intron 1 of 23)	985.0	NM_001081557	100072.0	Mm.318846	NM_001081557	ENSMUSG00000014592	Camta1	1810059M14Rik|2310058O09Rik|AI316882|AW987475|mKIAA0833	calmodulin binding transcription activator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-69186451-4	chr10	69186361	69186561	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22091.0	NM_001252636	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-73773099-4	chr12	73772996	73773196	+	934.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008856, intron 12 of 13)	intron (NM_008856, intron 12 of 13)	-128228.0	NM_001313920	15251.0	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3424337-4	chr12	3424246	3424446	+	950.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030694, intron 1 of 2)	intron (NR_030694, intron 1 of 2)	2401.0	NR_030694	100043040.0	Mm.415417	NR_030694	ENSMUSG00000071456	1110002L01Rik	-	RIKEN cDNA 1110002L01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-91908389-4	chr13	91908299	91908499	+	777.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009027, intron 6 of 14)	intron (NM_009027, intron 6 of 14)	-31514.0	NM_198415	76722.0	Mm.316438	NM_198415	ENSMUSG00000021622	Ckmt2	2300008A19Rik|ScCKmit	creatine kinase, mitochondrial 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-88277388-4	chr7	88277307	88277507	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311790)	promoter-TSS (NM_001311790)	-678.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-62760679-4	chr13	62760577	62760777	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_030493)	promoter-TSS (NR_030493)	-62.0	NR_030493	751548.0		NR_030493	ENSMUSG00000096098	Mir713	Mirn713|mir-713|mmu-mir-713	microRNA 713	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-8734045-4	chr3	8733978	8734178	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-67040.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105304824-2	chr8	105304724	105304924	+	693.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172760)	promoter-TSS (NM_172760)	-777.0	NM_172760	234683.0	Mm.237966	NM_172760	ENSMUSG00000014791	Elmo3	9930107J06|BC058752|CED-12|Ced12	engulfment and cell motility 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-22858966-2	chr8	22858866	22859066	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081149)	promoter-TSS (NM_001081149)	-573.0	NM_001081149	244349.0	Mm.182776	NM_001081149	ENSMUSG00000031540	Kat6a	1500036M03|9930021N24Rik|MOZ|Myst3|Zfp220	K(lysine) acetyltransferase 6A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-108148065-4	chr3	108147971	108148171	+	965.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001305461)	TTS (NM_001305461)	-1919.0	NM_010306	14679.0	Mm.271703	NM_010306	ENSMUSG00000000001	Gnai3	AI158965|AW537698|Galphai3|Gnai-3	guanine nucleotide binding protein (G protein), alpha inhibiting 3	protein-coding	1.9686907249192	2.4882350705257	2.63267063313466	2.74315742170732	1.98383996566262	2.50608866752875	2.6527787662738	2.75687030351206	0.0364012085568616	0.963258126394919	0.998431161219273
Merged-chr5-135191841-4	chr5	135191751	135191951	+	864.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011714, intron 1 of 18)	B3|SINE|B2	4528.0	NM_011714	22385.0	Mm.40331	NM_011714	ENSMUSG00000002748	Baz1b	C87820|WSTF|Wbscr9	bromodomain adjacent to zinc finger domain, 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-87810453-2	chr6	87810353	87810553	+	747.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133717)	promoter-TSS (NM_133717)	-696.0	NM_133717	69834.0	Mm.37380	NM_133717	ENSMUSG00000030055	Rab43	1810048P08Rik|2500004H21Rik|AW490415	RAB43, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101935257-2	chr7	101935157	101935357	+	796.8000490000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1400.0	NM_001162974	69358.0	Mm.214841	NM_027053	ENSMUSG00000064307	Lrrc51	1700008D07Rik|Lrtomt	leucine rich repeat containing 51	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-108248727-4	chr5	108248627	108248827	+	912.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	-20170.0	NM_026106	13486.0	Mm.303534	NM_026106	ENSMUSG00000029265	Dr1	1700121L09Rik|Dr1l|NC2|NC2beta	down-regulator of transcription 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-81231738-2	chr13	81231638	81231838	+	545.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 85 of 89)	intron (NM_054053, intron 85 of 89)	267664.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129263851-2	chr4	129263751	129263951	+	588.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2447.0	NM_001285867	97130.0	Mm.331907	NM_001033189	ENSMUSG00000050390	C77080	mKIAA1522	expressed sequence C77080	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-94583135-4	chr3	94583051	94583251	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029721)	promoter-TSS (NM_029721)	-435.0	NM_029721	76742.0	Mm.28160	NM_029721	ENSMUSG00000028136	Snx27	5730552M22Rik|ESTM45|ESTM47|R75405	sorting nexin family member 27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-113207280-4	chr7	113207167	113207367	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007489)	promoter-TSS (NM_007489)	-198.0	NM_001243048	11865.0	Mm.33970	NM_007489	ENSMUSG00000055116	Arntl	Arnt3|BMAL1b|Bmal1|MOP3|bHLHe5|bmal1b'	aryl hydrocarbon receptor nuclear translocator-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101391366-2	chr7	101391266	101391466	+	904.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001040111, intron 12 of 33)	L2b|LINE|L2	-3022.0	NM_198096	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-118862924-4	chr10	118862819	118863019	+	791.270813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001014390, intron 2 of 2)	intron (NM_001014390, intron 2 of 2)	5984.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-19629091-1	chr10	19628991	19629191	+	563.0	f1_balb.idr	intron (NM_178258, intron 3 of 4)	L2b|LINE|L2	7063.0	NM_178258	237310.0	Mm.331979	NM_178258	ENSMUSG00000039760	Il22ra2	CRF2-10|CRF2-s1|CRF2X|Il-22bp	interleukin 22 receptor, alpha 2	protein-coding	1.02964902097763	0.642739553472841	1.25634174950866	0.623702121245498	1.48709691954598	0.861848352817354	1.37896119646547	0.625162529661751	0.997011361123624	0.523305131829096	0.948187958023104
Merged-chr9-77903699-1	chr9	77903599	77903799	+	592.0	f1_balb.idr	Intergenic	Intergenic	-13666.0	NM_134255	68801.0	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	-0.0116883277257002	-0.479822886072187	-0.483879204739049	-0.487009580715148	-0.491434476178006	-0.478908694566478	0.209275241354339	-0.486462659571721	0.727315320936644	0.792052779762301	1
Merged-chr17-4840330-3	chr17	4840220	4840420	+	703.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-154754.0	NM_001085355	239985.0	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-50293716-2	chr17	50293616	50293816	+	826.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001277863)	promoter-TSS (NM_001277863)	-96.0	NM_001277863	13164.0	Mm.280641	NM_010021	ENSMUSG00000010592	Dazl	Daz-like|Dazh|Dazl1|Dazla|Tpx-2|Tpx2	deleted in azoospermia-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152540004-4	chr1	152539903	152540103	+	899.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001346119, exon 10 of 18)	exon (NM_001346119, exon 10 of 18)	85214.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-16103953-2	chr1	16103853	16104053	+	560.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011291, intron 1 of 6)	intron (NM_011291, intron 1 of 6)	480.0	NM_011291	19989.0	Mm.319659	NM_011291	ENSMUSG00000043716	Rpl7	Rpl7a|Surf-3	ribosomal protein L7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-49075626-4	chr10	49075516	49075716	+	996.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	712321.0	NM_001358866	14806.0	Mm.185993	NM_010349	ENSMUSG00000056073	Grik2	AW124492|C130030K03Rik|GluK2|Glur-6|Glur6|Glurbeta2	glutamate receptor, ionotropic, kainate 2 (beta 2)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-30949412-4	chr13	30949302	30949502	+	930.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360093, intron 1 of 28)	intron (NM_001360093, intron 1 of 28)	896.0	NM_001360093	66482.0	Mm.293510	NM_025588	ENSMUSG00000021357	Exoc2	2410030I24Rik|AI648199|Sec5|Sec5l1	exocyst complex component 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-85357615-4	chr9	85357522	85357722	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30472.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-24662733-4	chr7	24662624	24662824	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_030681, exon 2 of 2)	non-coding (NR_030681, exon 2 of 2)	1430.0	NR_030681	100043706.0	Mm.483825	NR_030681	ENSMUSG00000108470	Gm4598	-	predicted gene 4598	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-123213713-2	chr8	123213584	123213784	+	562.5	f0_balb.idr|f1_balb.idr	promoter-TSS (NM_145606)	promoter-TSS (NM_145606)	826.0	NM_177279	320869.0	Mm.258354	NM_177279	ENSMUSG00000048478	Spata33	4732415M23Rik|AI847264	spermatogenesis associated 33	protein-coding	1.8284323853974	1.0930822901717	1.71275346882029	2.05366035391548	1.95531175795634	1.09929312242461	2.97700944259673	1.49829132850225	0.956325567590858	0.396049671026103	0.883276804275027
Merged-chr8-127776734-2	chr8	127776634	127776834	+	617.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Rod|LINE|L1	477082.0	NM_001013580	93742.0	Mm.299254	NM_033620	ENSMUSG00000025812	Pard3	AA960621|AI256638|Asip|D8Ertd580e|Par-3|Par3|Pard-3|Pard3a|Phip	par-3 family cell polarity regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69575433-3	chr11	69575343	69575543	+	786.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144824, intron 3 of 9)	B3|SINE|B2	3881.0	NM_144824	216853.0	Mm.31586	NM_144824	ENSMUSG00000041346	Wrap53	BC021790|Wdr79	WD repeat containing, antisense to Trp53	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-75281026-2	chr3	75280926	75281126	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10948.0	NM_026460	67931.0	Mm.259446	NM_026460	ENSMUSG00000034139	Serpini2	Spi14	serine (or cysteine) peptidase inhibitor, clade I, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-95339820-4	chr1	95339724	95339924	+	985.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	26196.0	NM_026321	67698.0	Mm.272705	NM_026321	ENSMUSG00000051185	Fam174a	2310044D20Rik|Fam174|Naa6|Tmem157	family with sequence similarity 174, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-28675375-4	chr12	28675297	28675497	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134052, intron 1 of 3)	CpG	190.0	NM_134052	104923.0	Mm.291504	NM_134052	ENSMUSG00000020629	Adi1	AL024210|Fe-ARD|MTCBP-1|Ni-ARD	acireductone dioxygenase 1	protein-coding	3.22311650671809	2.3820067173665	3.68165490387952	3.88685833616761	3.24978932226812	3.00056815088191	2.1145940942064	2.04334637690958	-1.16996846433963	0.102973489156447	0.49965324463429
Merged-chr19-59055865-2	chr19	59055781	59055981	+	718.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114312, intron 2 of 16)	L1_Mus3|LINE|L1	20188.0	NM_175172	71653.0	Mm.37338	NM_175172	ENSMUSG00000041362	Shtn1	4930506M07Rik|Shootin1|mKIAA1598	shootin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-93191471-2	chr16	93191371	93191571	+	571.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	161718.0	NR_040486	69857.0	Mm.81192	NR_040486	ENSMUSG00000100277	1810053B23Rik	1810008L18Rik|1810056K14Rik	RIKEN cDNA 1810053B23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-87754650-5	chr11	87754529	87754729	+	710.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2235.0	NR_029555	387160.0		NR_029555	ENSMUSG00000105196	Mir142	Mirn142|miR-142|mir-142a|mmu-mir-142|mmu-mir-142a	microRNA 142	ncRNA	0.417810441027636	0.985074097461079	0.797624195390555	0.430047907766462	1.13832345927556	0.448787667627125	0.439406995617676	1.31059002902319	1.09794509521935	0.537531112311013	1
Merged-chr2-93954300-2	chr2	93954200	93954400	+	672.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	2800.0	NM_001145034	620695.0	Mm.482106	NM_001145034	ENSMUSG00000087006	Gm13889	Ag2	predicted gene 13889	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-89591900-4	chr15	89591776	89591976	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026817)	promoter-TSS (NM_026817)	47.0	NM_026817	68708.0	Mm.23258	NM_026817	ENSMUSG00000022621	Rabl2	1110031N17Rik|AW549303|Rabl2a	RAB, member RAS oncogene family-like 2	protein-coding	2.16433037446589	2.93853376405311	2.00364303823537	3.16344561729463	2.18278721082833	2.73381231057667	2.51379530261011	3.47632676647159	0.308564388528844	0.693630720523247	0.997536945022547
Merged-chr6-97818307-4	chr6	97818198	97818398	+	981.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113198, intron 1 of 9)	intron (NM_001113198, intron 1 of 9)	11240.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	3.17590139354088	2.74871724569791	1.92245763260598	2.70425136688776	3.39076159177835	3.3321215597407	3.30819759978387	3.4921146487264	1.14405996433006	0.0785667220919294	0.426850598553126
Merged-chr11-88205113-3	chr11	88204957	88205157	+	713.633362	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291271, intron 1 of 4)	intron (NM_001291271, intron 1 of 4)	669.0	NM_001291271	64656.0	Mm.168680	NM_024174	ENSMUSG00000023723	Mrps23	D11Bwg1153e|MRP-S23|Rpms23|S23mt	mitochondrial ribosomal protein S23	protein-coding	0.872971882368477	0.474470233233333	0.464366590970461	1.50169670286225	0.882902369686886	0.476730408993997	0.466606061366955	1.17234605689214	-0.573048113846817	0.741761421470231	0.998431161219273
Merged-chr16-50397475-4	chr16	50397402	50397602	+	912.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027444, intron 2 of 16)	intron (NM_027444, intron 2 of 16)	34887.0	NM_027444	70508.0	Mm.28940	NM_027444	ENSMUSG00000022641	Bbx	5530401J07Rik|5730403O13Rik	bobby sox HMG box containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107711763-2	chr9	107711664	107711864	+	727.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1289.0	NM_011349	20350.0	Mm.12903	NM_011349	ENSMUSG00000034684	Sema3f	Sema4|Semak	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F	protein-coding	-0.487523087028307	-0.723274307142837	-0.726005090670639	-0.728098832028648	-0.379553661343964	-0.722656113429626	-0.725404442873458	-0.44411148321568	1.2868720227515	0.647634616522356	1
Merged-chr12-76538083-4	chr12	76537982	76538182	+	997.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153804, intron 1 of 18)	intron (NM_153804, intron 1 of 18)	4522.0	NM_153804	263406.0	Mm.291854	NM_153804	ENSMUSG00000052609	Plekhg3	BC030417	pleckstrin homology domain containing, family G (with RhoGef domain) member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-89839352-2	chr2	89839252	89839452	+	571.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-3409.0	NM_146983	258985.0	Mm.223374	NM_146983	ENSMUSG00000075073	Olfr1256	MOR231-1	olfactory receptor 1256	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-18620590-2	chr19	18620490	18620690	+	655.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_017375, intron 1 of 9)	intron (NM_017375, intron 1 of 9)	11223.0	NM_017375	20409.0	Mm.172222	NM_017375	ENSMUSG00000024725	Ostf1	C78236|SH3P2|Sh3d3	osteoclast stimulating factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-100663577-2	chr15	100663477	100663677	+	980.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001270537, intron 1 of 10)	RSINE1|SINE|B4	5923.0	NM_001270537	668218.0	Mm.451225	NM_001270537	ENSMUSG00000098112	Bin2	-	bridging integrator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-8124297-3	chr10	8124194	8124394	+	793.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-168171.0	NM_138667	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-91775002-2	chr12	91774902	91775102	+	838.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 1 of 6)	intron (NM_175367, intron 1 of 6)	11434.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-29470714-2	chr19	29470614	29470814	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_021396, exon 6 of 6)	3' UTR (NM_021396, exon 6 of 6)	51273.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-89407065-5	chr10	89406964	89407164	+	702.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36903.0	NM_001284344	237436.0	Mm.11982	NM_001033331	ENSMUSG00000074802	Gas2l3	8430435B07Rik|Gm240	growth arrest-specific 2 like 3	protein-coding	1.00194456826245	1.98644228072012	2.22037966967568	1.25677960691023	1.52877509755886	1.86985560295615	2.2393448633784	1.26223092162061	0.161957251551503	0.888308250027749	0.998431161219273
Merged-chr9-58204292-4	chr9	58204181	58204381	+	742.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161541)	promoter-TSS (NM_001161541)	38.0	NM_001161541	320563.0	Mm.186499	NM_177193	ENSMUSG00000051243	Islr2	B930052A04Rik|Linx|Mbu-3|mKIAA1465	immunoglobulin superfamily containing leucine-rich repeat 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-11192499-4	chr2	11192410	11192610	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008859, intron 1 of 17)	intron (NM_008859, intron 1 of 17)	20128.0	NM_008859	18761.0	Mm.329993	NM_008859	ENSMUSG00000026778	Prkcq	A130035A12Rik|AW494342|PKC-0|PKC-theta|PKCtheta|Pkcq	protein kinase C, theta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-87474282-1	chr12	87474182	87474382	+	554.0	f1_balb.idr	Intergenic	B3|SINE|B2	-1983.0	NM_025507	66354.0	Mm.271174	NM_025507	ENSMUSG00000021039	Snw1	2310008B08Rik|AW048543|NCoA-62|SKIP|Skiip	SNW domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-37339797-4	chr10	37339698	37339898	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-200872.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-156661391-2	chr1	156661300	156661500	+	809.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023141, intron 4 of 5)	intron (NM_023141, intron 4 of 5)	12939.0	NM_023141	30935.0	Mm.206737	NM_023141	ENSMUSG00000060519	Tor3a	Adir	torsin family 3, member A	protein-coding	1.54999749399475	2.45928880638363	2.52576230905319	1.27931110408417	1.69700155222038	1.09502472573448	1.98178343187118	1.28520723646345	-1.37703864179113	0.214336778642368	0.704680125178425
Merged-chr15-6389648-3	chr15	6389577	6389777	+	939.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037905, intron 1 of 13)	intron (NM_001037905, intron 1 of 13)	2929.0	NM_001310446	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-24164228-1	chr19	24164128	24164328	+	600.0	f1_c57bl6.idr	intron (NM_011597, intron 1 of 22)	intron (NM_011597, intron 1 of 22)	9961.0	NM_001198985	21873.0	Mm.104744	NM_011597	ENSMUSG00000024812	Tjp2	ZO-2	tight junction protein 2	protein-coding	1.25637873736559	0.378261189898705	1.02832151954038	1.36194136327261	0.348270865231134	0.380566134763009	0.370229665290031	0.361281070093757	-4.61510467211956	0.01252507537908	1
Merged-chr9-42094891-4	chr9	42094796	42094996	+	995.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011436, intron 3 of 47)	intron (NM_011436, intron 3 of 47)	-17683.0	NM_001357261	20660.0	Mm.121920	NM_011436	ENSMUSG00000049313	Sorl1	2900010L19Rik|AI596264|AW261561|LR11|SorLA|gp250|mSorLA	sortilin-related receptor, LDLR class A repeats-containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115487859-2	chr5	115487759	115487959	+	747.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	T-rich|Low_complexity|Low_complexity	-3375.0	NM_133760	75387.0	Mm.332616	NM_133760	ENSMUSG00000029524	Sirt4	4930596O17Rik	sirtuin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-80706804-4	chr18	80706702	80706902	+	922.974976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198429, intron 1 of 9)	intron (NM_198429, intron 1 of 9)	1371.0	NM_001164111	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	2.25744173309218	0.898985338974563	1.8248004454829	0.852749165403735	0.822285684913424	0.904614417171857	2.56889347144614	1.89183172474211	0.427264887870144	0.856651780616085	0.998431161219273
Merged-chr15-84229942-2	chr15	84229842	84230042	+	704.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2101.0	NM_133167	170736.0	Mm.323892	NM_133167	ENSMUSG00000022438	Parvb	AI595373|AW742462|D15Gsk1|affixin	parvin, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19696585-3	chr7	19696469	19696669	+	959.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009696, exon 4 of 4)	exon (NM_009696, exon 4 of 4)	1829.0	NM_001305819	11816.0	Mm.305152	NM_009696	ENSMUSG00000002985	Apoe	AI255918|Apo-E	apolipoprotein E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-37007466-4	chr15	37007383	37007583	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026521)	promoter-TSS (NM_026521)	-81.0	NM_026521	68036.0	Mm.371631	NM_026521	ENSMUSG00000062397	Zfp706	3110006P09Rik|AA793007|AW536850|C77232|Znf706	zinc finger protein 706	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-88646362-3	chr8	88646253	88646453	+	724.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145857)	promoter-TSS (NM_145857)	-994.0	NM_145857	257632.0	Mm.222633	NM_145857	ENSMUSG00000055994	Nod2	ACUG|BLAU|CD|Card15|F830032C23Rik|IBD1|Nlrc2	nucleotide-binding oligomerization domain containing 2	protein-coding	1.13634039630616	1.26986713311136	0.849333279165576	1.66218055845617	1.48885477223452	1.27930313455815	1.8253943489322	0.840313763023485	0.539464746831106	0.685365323484818	0.996533206832645
Merged-chr19-16142668-4	chr19	16142575	16142775	+	970.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008139, intron 1 of 6)	intron (NM_008139, intron 1 of 6)	9844.0	NM_008139	14682.0	Mm.439701	NM_008139	ENSMUSG00000024639	Gnaq	1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI	guanine nucleotide binding protein, alpha q polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91456067-4	chr16	91455955	91456155	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9049.0	NR_077219	100503120.0	Mm.387130	NR_077219	ENSMUSG00000084866	A930006K02Rik	-	RIKEN cDNA A930006K02 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123393975-4	chr5	123393872	123394072	+	984.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177582)	promoter-TSS (NM_177582)	-826.0	NM_133917	208104.0	Mm.83277	NM_133917	ENSMUSG00000038342	Mlxip	AW228700|Mir|bHLHe36	MLX interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-73257315-4	chr5	73257251	73257451	+	919.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028194)	promoter-TSS (NM_028194)	-733.0	NM_028194	72313.0	Mm.260594	NM_028194	ENSMUSG00000070733	Fryl	2010313D22Rik|2310004H21Rik|2510002A14Rik|9030227G01Rik|mKIAA0826	FRY like transcription coactivator	protein-coding	2.07260776853874	2.71959771425748	1.90886672882747	3.23136913503874	2.70357670441317	1.47610150452452	2.75016363326798	2.66460969952246	-0.209137509426069	0.810424305090964	0.998431161219273
Merged-chr15-24205677-2	chr15	24205577	24205777	+	590.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1-int|LTR|ERVL-MaLR	1169214.0	NM_001081299	320865.0	Mm.241965	NM_001081299	ENSMUSG00000040420	Cdh18	B230220E17Rik|Cdh14l|Tg(GFAP-APOE_i4)1Hol	cadherin 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-54988151-3	chr11	54988060	54988260	+	729.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_138556, intron 19 of 24)	B3A|SINE|B2	-25220.0	NM_001271455	57783.0	Mm.259671	NM_021327	ENSMUSG00000020400	Tnip1	ABIN|ABIN-1|ABIN1|AU018810|Naf1|Nef|VAN	TNFAIP3 interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-116975940-4	chr8	116975835	116976035	+	982.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027103, intron 1 of 2)	intron (NM_027103, intron 1 of 2)	2718.0	NM_001357254	69528.0	Mm.272846	NM_027103	ENSMUSG00000031847	1700030J22Rik	-	RIKEN cDNA 1700030J22 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-52091079-4	chr16	52090998	52091198	+	988.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033238, intron 3 of 17)	intron (NM_001033238, intron 3 of 17)	59549.0	NM_001033238	208650.0	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-27302543-4	chr3	27302442	27302642	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14535.0	NM_009425	22035.0	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-17742395-2	chr2	17742295	17742495	+	625.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11327.0	NM_028757	74103.0	Mm.120298	NM_028757	ENSMUSG00000053702	Nebl	1200007O21Rik|A630080F05Rik|BB140644|D830029A09Rik|Lnebl	nebulette	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-83384193-3	chr4	83384057	83384257	+	575.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045450, intron 2 of 2)	intron (NR_045450, intron 2 of 2)	6511.0	NR_045450	790913.0	Mm.406752	NR_045450	ENSMUSG00000086321	Gm11413	-	predicted gene 11413	ncRNA	-2.18233058068552	-2.15536956715525	-2.16352280018114	-2.04193253143548	-2.18043796738662	-2.15360272754651	-2.16167708693786	-2.16902129354933	-0.683654500252594	0.846597994014493	1
Merged-chr16-92402722-3	chr16	92402612	92402812	+	655.733337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081549, intron 1 of 3)	intron (NM_001081549, intron 1 of 3)	-2634.0	NM_019466	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127750719-4	chr7	127750619	127750819	+	915.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172748, intron 5 of 10)	intron (NM_172748, intron 5 of 10)	3944.0	NM_172748	233902.0	Mm.259353	NM_172748	ENSMUSG00000030811	Fbxl19	6030430O11|BC059812|Fbl19	F-box and leucine-rich repeat protein 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118839233-2	chr9	118839133	118839333	+	573.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 6 of 13)	intron (NM_001113514, intron 6 of 13)	-87303.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-74632606-3	chr5	74632530	74632730	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159577, intron 2 of 10)	Kanga1c|DNA|TcMar-Tc2	45242.0	NM_001159580	16924.0	Mm.440403	NM_010727	ENSMUSG00000029228	Lnx1	Lnx	ligand of numb-protein X 1	protein-coding	2.93579805792052	3.93731879063665	2.82265168489072	2.7333681741963	4.37831355141511	3.23025631861988	4.38490204421285	4.07408374776304	1.31653373620722	0.0196624364169956	0.177821541807372
Merged-chr7-100850738-2	chr7	100850638	100850838	+	738.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358914, intron 5 of 10)	intron (NM_001358914, intron 5 of 10)	12675.0	NM_001358914	320100.0	Mm.40336	NM_177073	ENSMUSG00000008318	Relt	E430021K24Rik|Tnfrsf19l	RELT tumor necrosis factor receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34002326-2	chr17	34002227	34002427	+	968.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-1980.0	NM_001347346	14972.0	Mm.422886	NM_001001892	ENSMUSG00000061232	H2-K1	H-2K|H-2K(d)|H2-K|K-f	histocompatibility 2, K1, K region	protein-coding	-1.7024385483431	-1.81249224917775	-1.82134771053534	-1.82862185015837	-1.70038292649591	-1.81057323376012	-1.81934302819017	-1.82731978264371	0.0376840119903864	0.991491645451152	1
Merged-chr9-61290320-2	chr9	61290220	61290420	+	579.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045334, intron 2 of 4)	intron (NR_045334, intron 2 of 4)	3489.0	NR_045334	622037.0	Mm.126243	NR_045334	ENSMUSG00000111658	B930092H01Rik	-	RIKEN cDNA B930092H01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-40392743-3	chr1	40392644	40392844	+	908.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36826.0	NM_001294171	17082.0	Mm.289824	NM_010743	ENSMUSG00000026069	Il1rl1	DER4|Fit-1|Ly84|ST2L|St2|St2-rs1|T1|T1/ST2	interleukin 1 receptor-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-72559244-3	chr5	72559151	72559351	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_133921, exon 2 of 23)	exon (NM_133921, exon 2 of 23)	394.0	NM_001359837	100978.0	Mm.187453	NM_133921	ENSMUSG00000072889	Nfxl1	1700012H24Rik|AW538212|D430033A06Rik|DNABF|GCF|Gm1058|TCF9	nuclear transcription factor, X-box binding-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-24953839-1	chr19	24953739	24953939	+	623.0	f0_c57.idr	intron (NM_146097, intron 3 of 14)	intron (NM_146097, intron 3 of 14)	7777.0	NR_033744	226043.0	Mm.272127	NM_146097	ENSMUSG00000024878	Cbwd1	AV349248|BC018472	COBW domain containing 1	protein-coding	2.69126877134524	1.49425759325228	2.88380676570602	2.20670245264381	1.10810065416093	0.958080981202517	0.926641869483575	0.898432370473652	-5.04282690832082	0.000173249223129799	0.0048117250878082
Merged-chr8-13339159-4	chr8	13339106	13339306	+	834.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358991, intron 1 of 12)	CpG	402.0	NM_009361	21781.0	Mm.925	NM_009361	ENSMUSG00000038482	Tfdp1	Dp1|Drtf1	transcription factor Dp 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-91274589-2	chr5	91274489	91274689	+	719.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_040428, intron 3 of 5)	intron (NR_040428, intron 3 of 5)	8487.0	NR_040428	100503265.0	Mm.125059	NR_040428	ENSMUSG00000107198	Gm19619	-	predicted gene, 19619	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-95827687-4	chr11	95827588	95827788	+	991.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153104, intron 1 of 2)	intron (NM_153104, intron 1 of 2)	3188.0	NM_153104	237928.0	Mm.133075	NM_153104	ENSMUSG00000050860	Phospho1	D11Moh36|Phospo1	phosphatase, orphan 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-103333460-2	chr11	103333360	103333560	+	647.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_133715, exon 14 of 16)	exon (NM_133715, exon 14 of 16)	11242.0	NM_133715	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-117348458-4	chr5	117348338	117348538	+	937.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033311, intron 7 of 9)	intron (NM_001033311, intron 7 of 9)	-8867.0	NM_021539	59043.0	Mm.28489	NM_021539	ENSMUSG00000029364	Wsb2	AA673511|Swip2|WSB-2	WD repeat and SOCS box-containing 2	protein-coding	2.36929658415997	2.12473113184101	2.66647375531761	2.67980079188375	2.38886155924912	2.29972605756417	2.86211027263243	1.39645542917082	-0.294272907530887	0.736335388424916	0.998431161219273
Merged-chr13-23575274-2	chr13	23575174	23575374	+	743.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178204)	promoter-TSS (NM_178204)	-489.0	NM_178204	319149.0	Mm.347699	NM_178204	ENSMUSG00000099583	Hist1h3d	H3-b	histone cluster 1, H3d	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-87927760-2	chr3	87927660	87927860	+	560.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153562, intron 2 of 7)	intron (NM_153562, intron 2 of 7)	2435.0	NM_153562	229503.0	Mm.296008	NM_153562	ENSMUSG00000004896	Rrnad1	-	ribosomal RNA adenine dimethylase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-11094056-2	chr9	11093956	11094156	+	556.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3A|LINE|L1	-189281.0	NM_001170787	244682.0	Mm.187021	NM_001033359	ENSMUSG00000039488	Cntn5	6720426O10Rik|A830025P08Rik|Gm507|NB-2	contactin 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-111187318-2	chr8	111187218	111187418	+	675.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009149, intron 8 of 25)	B1_Mus2|SINE|Alu	-41820.0	NR_040364	434350.0	Mm.442061	NR_040363		9430091E24Rik	-	RIKEN cDNA 9430091E24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-38151524-2	chr13	38151424	38151624	+	564.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_023842, exon 1 of 24)	5' UTR (NM_023842, exon 1 of 24)	230.0	NM_023842	109620.0	Mm.355327	NM_023842	ENSMUSG00000054889	Dsp	2300002E22Rik|5730453H04Rik|AA407887|AA407888|AW109828|DP|rul	desmoplakin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-127152619-2	chr6	127152519	127152719	+	873.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_040275, intron 1 of 1)	intron (NR_040275, intron 1 of 1)	-1571.0	NM_009829	12444.0	Mm.333406	NM_009829	ENSMUSG00000000184	Ccnd2	2600016F06Rik|AI256817|BF642806|C86853|Vin-1|Vin1|cD2	cyclin D2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-8724023-3	chr19	8723870	8724070	+	887.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161413)	promoter-TSS (NM_001161413)	483.0	NR_002896	83673.0	Mm.292489	NR_002896	ENSMUSG00000108414	Snhg1	-	small nucleolar RNA host gene 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-30882911-2	chr14	30882811	30883011	+	771.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	-3565.0	NM_001159299	16427.0	Mm.34819	NM_018746	ENSMUSG00000021922	Itih4	ITI-HC4|Itih-4|PK-120	inter alpha-trypsin inhibitor, heavy chain 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-149015561-1	chr5	149015461	149015661	+	908.0	f1_balb.idr	Intergenic	CpG	8599.0	NR_040429	100503307.0	Mm.188008	NR_040429	ENSMUSG00000086610	Gm15408	-	predicted gene 15408	ncRNA	-0.352021181204243	-0.688380075492313	-0.691187086589463	-0.69333954267866	-0.44652018555406	-0.687744679354554	-0.382840556069127	-0.692964349309076	0.631771254689595	0.820415276572882	1
Merged-chr5-35758959-2	chr5	35758859	35759059	+	776.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177678, intron 1 of 19)	intron (NM_177678, intron 1 of 19)	1079.0	NM_001177698	231148.0	Mm.254446	NM_177678	ENSMUSG00000029095	Ablim2	AI606905|C230091L11	actin-binding LIM protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116814706-3	chr11	116814597	116814797	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347633, intron 2 of 4)	intron (NM_001347633, intron 2 of 4)	13349.0	NM_026280	67622.0	Mm.64962	NM_026280	ENSMUSG00000020814	Mxra7	1810057P16Rik|E130302J09Rik	matrix-remodelling associated 7	protein-coding	4.13471554380942	4.46958552611085	4.76971094306621	4.6853193761465	6.56870982255702	6.71762697350189	6.57842139945642	6.9431572476143	2.43982661339696	1.21280410729546e-20	1.67898734761511e-17
Merged-chr13-91681680-3	chr13	91681580	91681780	+	802.883362	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360776, intron 9 of 15)	intron (NM_001360776, intron 9 of 15)	-59841.0	NM_028790	74156.0	Mm.275963	NM_028790	ENSMUSG00000021620	Acot12	1300004O04Rik|4930449F15Rik|AV027244|Cach|mCACH-1	acyl-CoA thioesterase 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19832877-2	chr7	19832777	19832977	+	651.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10122.0	NM_033601	12051.0	Mm.439658	NM_033601	ENSMUSG00000053175	Bcl3	AI528691|Bcl-3	B cell leukemia/lymphoma 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-75910163-3	chr7	75910074	75910274	+	798.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61836.0	NM_029652	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-24927171-3	chr2	24927096	24927296	+	811.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178408, intron 2 of 7)	intron (NM_178408, intron 2 of 7)	-7587.0	NM_001109686	77683.0	Mm.24176	NM_172545	ENSMUSG00000036893	Ehmt1	9230102N17Rik|D330003E03|Eu-HMTase1|GLP|GLP1|KMT1D|mKIAA1876	euchromatic histone methyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-39450513-4	chr10	39450406	39450606	+	863.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122892, intron 2 of 12)	L2a|LINE|L2	80707.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-109278013-1	chr8	109277913	109278113	+	565.0	f1_balb.idr	Intergenic	Intergenic	-28268.0	NR_151498	105243282.0	Mm.203332	NR_151498		4922502B01Rik	2900056M07Rik	RIKEN cDNA 4922502B01 gene	ncRNA	0.176930774350576	0.21119015738638	1.03024249113911	0.582303916245608	0.179141491843223	1.50677999388756	0.202664781107721	0.193117132145336	0.603353154093745	0.757715273168498	0.998431161219273
Merged-chr10-22344287-2	chr10	22344187	22344387	+	586.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009018, intron 6 of 6)	intron (NM_009018, intron 6 of 6)	-17607.0	NM_020030	56554.0	Mm.458004	NM_020030	ENSMUSG00000078452	Raet1d	RAE-1delta	retinoic acid early transcript delta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-40305604-3	chr19	40305508	40305708	+	980.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034962, intron 20 of 22)	MIR3|SINE|MIR	-33992.0	NM_016861	54132.0	Mm.5567	NM_016861	ENSMUSG00000055044	Pdlim1	CLP36|Clim1|mClim1	PDZ and LIM domain 1 (elfin)	protein-coding	1.20300685968877	1.06644165963606	2.34473218982969	2.06431353441346	2.24671038453125	1.07318635070001	2.95547091304508	1.27574293558981	0.785391022889448	0.503842306941993	0.939945060436928
Merged-chr4-116177141-4	chr4	116177076	116177276	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3804.0	NM_001099295	67323.0	Mm.45442	NM_001099295	ENSMUSG00000078593	1700042G07Rik	-	RIKEN cDNA 1700042G07 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-103552300-4	chr15	103552207	103552407	+	834.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12774.0	NM_001289587	14663.0	Mm.219621	NM_008134	ENSMUSG00000022491	Glycam1	MC26|Sgp50|glyCAM-1	glycosylation dependent cell adhesion molecule 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167361817-4	chr2	167361711	167361911	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12633.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80933833-4	chr10	80933729	80933929	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3738.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-40744394-4	chr3	40744327	40744527	+	932.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1186.0	NM_011020	18415.0	Mm.39330	NM_011020	ENSMUSG00000025757	Hspa4l	94kDa|AI461691|APG-1|Osp94	heat shock protein 4 like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-143361522-4	chr6	143361402	143361602	+	867.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	115614.0	NR_027803	52285.0	Mm.354898	NM_001033129		D6Ertd474e	1700001I24Rik|AU023129	DNA segment, Chr 6, ERATO Doi 474, expressed	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-50530354-4	chr17	50530239	50530439	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013880, intron 1 of 5)	intron (NM_013880, intron 1 of 5)	20792.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-51914049-3	chr3	51913937	51914137	+	718.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	190969.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19091531-2	chr7	19091431	19091631	+	814.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_032418, intron 10 of 14)	intron (NM_032418, intron 10 of 14)	-3013.0	NM_011383	20475.0	Mm.3410	NM_011383	ENSMUSG00000040841	Six5	Dmahp|MDMAHP|TrexBF	sine oculis-related homeobox 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-117311699-4	chr13	117311582	117311782	+	868.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	91109.0	NM_010330	13723.0	Mm.274926	NM_010330	ENSMUSG00000021728	Emb	AL022799|Gp70	embigin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-54489852-4	chr12	54489777	54489977	+	795.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-98559.0	NR_033689	665239.0	Mm.26856	NR_033689		Gm7550	EG665239|Gm666	predicted gene 7550	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-77804837-4	chr18	77804770	77804970	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013831, intron 1 of 14)	intron (NM_013831, intron 1 of 14)	-8480.0	NR_152167	619308.0	Mm.490456	NM_001033812		F830208F22Rik	-	RIKEN cDNA F830208F22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-114581579-3	chr9	114581483	114581683	+	761.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17214.0	NM_001042503	636931.0	Mm.17857	NM_001042503	ENSMUSG00000079259	Trim71	2610206G21Rik|AL022943|Gm1127|Lin41|lin-41|mLin41|mlin-41	tripartite motif-containing 71	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-86587007-4	chr11	86586913	86587113	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356531, intron 10 of 11)	intron (NM_001356531, intron 10 of 11)	-2855.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-156633312-2	chr1	156633212	156633412	+	714.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001136104, intron 7 of 12)	intron (NM_001136104, intron 7 of 12)	41027.0	NM_023141	30935.0	Mm.206737	NM_023141	ENSMUSG00000060519	Tor3a	Adir	torsin family 3, member A	protein-coding	-2.05752322593321	-2.15521190974092	-2.16307242109104	-2.16952927915413	-2.17938029103484	-2.15350850414045	-2.16129297361887	-2.16837350464794	-0.683654500252594	0.846597994014493	1
Merged-chr15-98881470-4	chr15	98881363	98881563	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026967)	promoter-TSS (NM_026967)	-49.0	NM_026967	69159.0	Mm.259708	NM_026967	ENSMUSG00000023755	Rhebl1	1810036J22Rik|Rheb2	Ras homolog enriched in brain like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-79347825-1	chr15	79347725	79347925	+	1000.0	f1_c57bl6.idr	promoter-TSS (NM_001304831)	promoter-TSS (NM_001304831)	-236.0	NM_001304831	17133.0	Mm.86646	NM_010755	ENSMUSG00000042622	Maff	-	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein F (avian)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55206909-2	chr19	55206809	55207009	+	673.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081076, intron 16 of 20)	intron (NM_001081076, intron 16 of 20)	14231.0	NR_106146	102465990.0		NR_106146	ENSMUSG00000098289	Mir6715	Gm27474|mmu-mir-6715	microRNA 6715	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115541778-2	chr5	115541678	115541878	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011223, intron 1 of 10)	RSINE1|SINE|B4	-17689.0	NM_007475	11837.0	Mm.5286	NM_007475	ENSMUSG00000067274	Rplp0	36B4|Arbp|L10E	ribosomal protein, large, P0	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-31775195-2	chr13	31775095	31775295	+	631.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31451.0	NM_008592	17300.0	Mm.12949	NM_008592	ENSMUSG00000050295	Foxc1	FREAC3|Fkh1|Mf1|Mf4|ch|fkh-1|frkhda	forkhead box C1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-139287630-3	chr4	139287536	139287736	+	894.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037761, intron 7 of 9)	intron (NM_001037761, intron 7 of 9)	23072.0	NR_151463	212555.0	Mm.45131	NM_145384	ENSMUSG00000028744	Pqlc2	BC019216	PQ loop repeat containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-134232275-4	chr5	134232182	134232382	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2657.0	NR_104383	17969.0	Mm.425296	NM_010876	ENSMUSG00000015950	Ncf1	NCF-47K|NOXO2|Ncf-1|p47-phox|p47<phox>|p47phox	neutrophil cytosolic factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-121351810-2	chr11	121351710	121351910	+	579.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025793, intron 1 of 9)	PB1D10|SINE|Alu	2637.0	NM_025793	66840.0	Mm.103986	NM_025793	ENSMUSG00000025173	Wdr45b	0610008N23Rik|AA408735|D16Bwg0193e|WIPI-3|Wdr45l	WD repeat domain 45B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-100839682-4	chr10	100839584	100839784	+	774.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-98049.0	NR_152765	102639396.0	Mm.404529	NR_152765		Gm35722	-	predicted gene, 35722	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-56567202-2	chr18	56567174	56567374	+	733.5	f0_balb.idr|f1_c57bl6.idr	intron (NM_001162989, intron 1 of 4)	B2_Mm2|SINE|B2	4705.0	NM_001162989	56698.0	Mm.214569	NM_019996	ENSMUSG00000008301	Phax	2810055C14Rik|4933427L19Rik|AU018701|AU018854|D18Ertd65e|Rnuxa|p55	phosphorylated adaptor for RNA export	protein-coding	-0.173586947563542	-0.163676416620317	-0.166964905135434	0.281321434531132	0.150953533243778	-0.162929547584544	0.228545419641551	-0.169037705074385	0.580455183078788	0.810704672177827	1
Merged-chr13-114885360-3	chr13	114885256	114885456	+	983.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008396, intron 3 of 29)	intron (NM_008396, intron 3 of 29)	46744.0	NM_008396	16398.0	Mm.5007	NM_008396	ENSMUSG00000015533	Itga2	CD49B|DX5|GPIa	integrin alpha 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-26581002-2	chr6	26580902	26581102	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	649576.0	NR_040771	626904.0	Mm.126787	NR_040771	ENSMUSG00000106799	Gm20756	-	predicted gene, 20756	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-72162482-1	chr7	72162382	72162582	+	766.75	f0_balb.idr	intron (NM_001024703, intron 16 of 22)	intron (NM_001024703, intron 16 of 22)	144113.0	NM_001024703	244049.0	Mm.217412	NM_001024703	ENSMUSG00000032776	Mctp2	Gm489	multiple C2 domains, transmembrane 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-118790823-3	chr2	118790692	118790892	+	950.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_170593, exon 8 of 8)	exon (NM_170593, exon 8 of 8)	11073.0	NM_170593	214240.0	Mm.221499	NM_170593	ENSMUSG00000040035	Disp2	AI840597|B230210L08Rik|DispB|mKIAA1742	dispatched RND tramsporter family member 2	protein-coding	2.02087081240209	1.37619304463689	1.08597763288728	1.30078420612734	2.59829856799539	2.07762039844421	1.34367374704139	2.3301912808746	1.82058046158383	0.0993825972248324	0.490158564608197
Merged-chr6-97455311-2	chr6	97455211	97455411	+	652.8000490000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	3975.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-143113967-2	chr6	143113867	143114067	+	569.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153819, intron 7 of 8)	ORR1C2|LTR|ERVL-MaLR	-13815.0	NM_001109688	74741.0	Mm.130260	NM_029081	ENSMUSG00000030279	C2cd5	5730419I09Rik|C030008B15Rik|CDP138	C2 calcium-dependent domain containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-32651195-4	chr16	32651116	32651316	+	917.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110147, intron 1 of 13)	intron (NM_001110147, intron 1 of 13)	6573.0	NM_016788	51789.0	Mm.251115	NM_016788	ENSMUSG00000022791	Tnk2	Ack|Ack-1|Ack1|Cdgip|Pyk1	tyrosine kinase, non-receptor, 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69684493-4	chr11	69684390	69684590	+	895.895874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001034097, exon 10 of 13)	exon (NM_001034097, exon 10 of 13)	1064.0	NM_001159505	69583.0	Mm.8983	NM_023517	ENSMUSG00000089669	Tnfsf13	2310026N09Rik|April|Tall2|Tnlg7b|Trdl1	tumor necrosis factor (ligand) superfamily, member 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-38039022-2	chr1	38038922	38039122	+	961.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198303, intron 12 of 23)	intron (NM_198303, intron 12 of 23)	41012.0	NM_198303	226982.0	Mm.260943	NM_198303	ENSMUSG00000026083	Eif5b	A030003E17Rik|BC018347|IF2	eukaryotic translation initiation factor 5B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-103552747-4	chr15	103552634	103552834	+	918.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12347.0	NM_001289587	14663.0	Mm.219621	NM_008134	ENSMUSG00000022491	Glycam1	MC26|Sgp50|glyCAM-1	glycosylation dependent cell adhesion molecule 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-11688768-2	chr16	11688668	11688868	+	786.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028964, intron 18 of 20)	intron (NM_028964, intron 18 of 20)	-90934.0	NR_126430	73761.0	Mm.39183	NR_126430		4833415N18Rik	-	RIKEN cDNA 4833415N18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-22359199-4	chr6	22359097	22359297	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	-3116.0	NM_138587	27999.0	Mm.490307	NM_138587	ENSMUSG00000029672	Fam3c	D6Wsu176e|Ilei	family with sequence similarity 3, member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-71368453-4	chr2	71368343	71368543	+	894.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172436)	promoter-TSS (NM_172436)	-889.0	NM_172436	78830.0	Mm.30928	NM_172436	ENSMUSG00000027010	Slc25a12	2610002D09Rik|AI839531|B230107K20Rik|BB129864	solute carrier family 25 (mitochondrial carrier, Aralar), member 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119249585-1	chr11	119249485	119249685	+	590.0	f1_balb.idr	intron (NM_175430, intron 11 of 18)	PB1D9|SINE|Alu	-18378.0	NM_001159324	14387.0	Mm.4793	NM_008064	ENSMUSG00000025579	Gaa	E430018M07Rik	glucosidase, alpha, acid	protein-coding	0.203558749620479	-0.0470475117451253	-0.0522926018201878	-0.0563401740604363	0.589068475876978	-0.0458653088203605	-0.0511356704610274	0.579940536106624	2.42227868464828	0.294742765131901	1
Merged-chr12-103345241-4	chr12	103345161	103345361	+	940.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023049, intron 2 of 9)	intron (NM_023049, intron 2 of 9)	10740.0	NM_023049	65256.0	Mm.27159	NM_023049	ENSMUSG00000021200	Asb2	1110008E15Rik	ankyrin repeat and SOCS box-containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-94484250-2	chr3	94484155	94484355	+	756.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357787)	promoter-TSS (NM_001357787)	-72.0	NM_001357787	78784.0	Mm.44292	NM_172434	ENSMUSG00000028137	Celf3	4930415M08Rik|BRUNOL1|CAGH4|ERDA4|ETR-1|Tnrc4	CUGBP, Elav-like family member 3	protein-coding	0.0488738492902778	0.0651580701877872	0.0598161212587014	0.351619681739792	0.760108569504087	0.0663632440806322	0.384696355601725	0.356140346756604	2.30963598227106	0.273930911615402	1
Merged-chr10-89686289-4	chr10	89686210	89686410	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_130956)	promoter-TSS (NR_130956)	-16.0	NM_001310704	213326.0	Mm.27651	NM_198021	ENSMUSG00000069539	Scyl2	AU015688|AW536445|BC030932|CVAK104|D10Ertd802e	SCY1-like 2 (S. cerevisiae)	protein-coding	5.58609159563328	5.6848477171849	5.25950264358445	5.06322105129934	5.36948079528433	5.03070563546708	4.57950690270658	5.59324647921404	-0.251735710386872	0.427958461039248	0.902927130518563
Merged-chr4-128726553-2	chr4	128726453	128726653	+	863.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_018774, intron 9 of 14)	MER58B|DNA|hAT-Charlie	-1018.0	NM_001195083	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-79031155-2	chr8	79031055	79031255	+	580.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001294279, intron 1 of 14)	LFSINE_Vert|SINE|tRNA	2718.0	NM_178267	622675.0	Mm.48724	NM_178267	ENSMUSG00000071064	Zfp827	2810449M09Rik|D630040G17Rik|Znf827	zinc finger protein 827	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-34727103-2	chr11	34727003	34727203	+	714.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_033374, intron 6 of 51)	intron (NM_033374, intron 6 of 51)	56802.0	NM_033374	94176.0	Mm.380679	NM_033374	ENSMUSG00000020143	Dock2	AI662014|AW122239|CED-5|Hch|MBC	dedicator of cyto-kinesis 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106122899-4	chr11	106122777	106122977	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011947, intron 5 of 15)	intron (NM_011947, intron 5 of 15)	37050.0	NM_001356459	67803.0	Mm.21687	NM_172397	ENSMUSG00000040699	Limd2	0610025L06Rik|AI413966	LIM domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-89315346-4	chr15	89315259	89315459	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001170561)	promoter-TSS (NM_001170561)	-48.0	NM_001170561	77980.0	Mm.35483	NM_030019	ENSMUSG00000036529	Sbf1	2610510A08Rik|B230113C15Rik|Mtmr5|mKIAA3020	SET binding factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-83582239-3	chr12	83582139	83582339	+	720.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359167, intron 3 of 12)	intron (NM_001359167, intron 3 of 12)	14983.0	NM_001359167	217695.0	Mm.59257	NM_183154	ENSMUSG00000042628	Zfyve1	DFCP1|G630053K23|TAFF1|ZNFN2A1|mKIAA1589	zinc finger, FYVE domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-84439004-3	chr18	84438885	84439085	+	849.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033341, intron 3 of 8)	L1_Mus3|LINE|L1	150519.0	NM_001033341	240476.0	Mm.329575	NM_001033341	ENSMUSG00000048410	Zfp407	6430585N13Rik|Gm333|Gm334|Gm948|ZNF407	zinc finger protein 407	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-79495277-2	chr11	79495177	79495377	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010897, intron 36 of 57)	intron (NM_010897, intron 36 of 57)	8805.0	NM_019409	18377.0	Mm.93335	NM_019409	ENSMUSG00000049612	Omg	-	oligodendrocyte myelin glycoprotein	protein-coding	0.360551343095031	0.0792232566512864	1.08968841472718	0.0657746987605369	0.0573717716757089	0.0809172813546052	0.718568904754335	0.0668066308374347	-1.22221140781888	0.563996699310757	1
Merged-chr3-84481221-2	chr3	84481089	84481289	+	731.06665	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033301)	promoter-TSS (NM_001033301)	-750.0	NM_001033301	229474.0	Mm.331107	NM_001033301	ENSMUSG00000041842	Fhdc1	6330505N24Rik|Gm126	FH2 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45340417-2	chr7	45340317	45340517	+	974.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029741, intron 28 of 29)	ZP3AR|Satellite|Satellite	5148.0	NM_010473	15464.0	Mm.39968	NM_010473	ENSMUSG00000038239	Hrc	-	histidine rich calcium binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-100506866-4	chr9	100506754	100506954	+	923.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001324530)	promoter-TSS (NM_001324530)	2.0	NM_001324530	17973.0	Mm.181485	NM_010878	ENSMUSG00000032475	Nck1	6330586M15Rik|D230010O13Rik|Nck|Nck-1	non-catalytic region of tyrosine kinase adaptor protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132563499-4	chr4	132563419	132563619	+	972.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081211)	promoter-TSS (NM_001081211)	-548.0	NM_001081211	19204.0	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83745613-2	chr11	83745513	83745713	+	625.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1327.0	NM_183249	66107.0	Mm.902	NM_183249	ENSMUSG00000051748	Wfdc21	1100001G20Rik|Wdnm1-like	WAP four-disulfide core domain 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-54848913-4	chr18	54848818	54849018	+	933.474976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	141262.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-147848481-4	chr4	147848425	147848625	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355730)	promoter-TSS (NM_001355730)	-107.0	NM_198619	242747.0	Mm.332053	NM_198619	ENSMUSG00000059423	Zfp933	2810408P10Rik	zinc finger protein 933	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-67313849-1	chr5	67313749	67313949	+	541.0	f1_c57bl6.idr	intron (NM_178651, intron 1 of 17)	intron (NM_178651, intron 1 of 17)	6894.0	NM_001310629	109108.0	Mm.234455	NM_178651	ENSMUSG00000029221	Slc30a9	2310024J23Rik|AL024256|GAC63|HUEL|znT-9	solute carrier family 30 (zinc transporter), member 9	protein-coding	-1.7024385483431	-1.81249224917775	-1.82134771053534	-1.82862185015837	-1.70038292649591	-1.81057323376012	-1.81934302819017	-1.82731978264371	0.0376840119903864	0.991491645451152	1
Merged-chr3-79525228-4	chr3	79525139	79525339	+	991.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162999, intron 1 of 16)	intron (NM_001162999, intron 1 of 16)	42440.0	NM_001162999	329679.0	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21446407-4	chr9	21446289	21446489	+	924.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357721, intron 1 of 19)	intron (NM_001357721, intron 1 of 19)	21481.0	NM_001357719	13430.0	Mm.433257	NM_007871	ENSMUSG00000033335	Dnm2	Dyn2|Udnm|b2b2159Clo	dynamin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4879838-4	chr16	4879740	4879940	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145359)	promoter-TSS (NM_145359)	11.0	NM_145359	207740.0	Mm.268895	NM_145359	ENSMUSG00000039568	Ubald1	1500031H01Rik|BC013706|Fam100a	UBA-like domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32976714-2	chr2	32976614	32976814	+	775.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_151460, intron 5 of 8)	intron (NR_151460, intron 5 of 8)	5369.0	NR_151461	56017.0	Mm.305754	NM_019488	ENSMUSG00000026791	Slc2a8	D2Ertd44e|GLUT8|GlutX1	solute carrier family 2, (facilitated glucose transporter), member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126799904-2	chr8	126799804	126800004	+	588.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49116.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-9427997-2	chr3	9427897	9428097	+	630.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_133218, exon 9 of 9)	3' UTR (NM_133218, exon 9 of 9)	24919.0	NR_015499	320088.0	Mm.212908	NR_015499	ENSMUSG00000097365	C030034L19Rik	A130044O20Rik	RIKEN cDNA C030034L19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-104960556-1	chr5	104960456	104960656	+	710.0	f1_balb.idr	intron (NM_030239, intron 10 of 15)	L1MB3|LINE|L1	22161.0	NM_030239	27405.0	Mm.389663	NM_030239	ENSMUSG00000029299	Abcg3	Abcp2|Mxr2	ATP binding cassette subfamily G member 3	protein-coding	0.445315698443665	0.19033346235557	0.183732083063768	0.178624148878671	0.452264992621149	0.191818680342219	0.976397665921471	0.732619192839167	2.70499313244589	0.177404173099791	1
Merged-chr13-37801915-2	chr13	37801796	37801996	+	544.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24142.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0.556334072348247	0.0309181827574436	0.0258179257162608	0.630608238417251	0.278325434285859	0.0320693877044838	0.0269418828887288	0.182924117806481	-1.70016263465377	0.424018055046589	1
Merged-chr10-121505452-4	chr10	121505350	121505550	+	935.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29200.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	1.60746492854583	2.01156186228827	2.93937571463575	2.58373736089904	2.5662095942911	2.38296866565536	2.78192641650278	3.1575430299115	0.742010453097893	0.362644845401164	0.858187939866503
Merged-chr16-49987166-4	chr16	49987047	49987247	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045001, intron 1 of 3)	intron (NR_045001, intron 1 of 3)	6687.0	NR_045001	628951.0	Mm.428032	NR_045001		Gm6936	-	predicted gene 6936	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-108209094-1	chr3	108208994	108209194	+	595.0	f1_balb.idr	5' UTR (NM_175183, exon 2 of 12)	5' UTR (NM_175183, exon 2 of 12)	1433.0	NM_001289545	72522.0	Mm.187326	NM_175183	ENSMUSG00000048997	Atxn7l2	2610528J18Rik	ataxin 7-like 2	protein-coding	-0.46940064029184	-0.455955402424306	-0.460349390564079	-0.463746670527688	-0.468558434167481	0.0684194636190325	0.250089184293825	-0.46315271595132	3.63951279130103	0.169023049387002	1
Merged-chr6-83582089-2	chr6	83581989	83582189	+	770.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_078345, intron 5 of 7)	B4|SINE|B4	-9585.0	NM_001362080	70527.0	Mm.32801	NM_024239	ENSMUSG00000006906	Stambp	5330424L14Rik|5730422L11Rik|AW107289|Amsh|mKIAA4198	STAM binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-124912625-1	chr8	124912525	124912725	+	581.5	f0_balb.idr	intron (NM_053207, intron 3 of 4)	intron (NM_053207, intron 3 of 4)	14739.0	NM_001111141	244666.0	Mm.482915	NM_001111141	ENSMUSG00000031986	Sprtn	Gm505	SprT-like N-terminal domain	protein-coding	1.12268340305868	0.878993098825001	0.868672080185897	0.86072668058509	1.8568003532433	1.25542496555548	1.3570969281564	1.83974971173972	3.65124410012611	0.0158557345470576	0.150901985533261
Merged-chr12-85493847-2	chr12	85493747	85493947	+	776.900024	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13A2|LTR|ERVK	19957.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-84476440-2	chr2	84476340	84476540	+	744.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355271, intron 1 of 8)	(TC)n|Simple_repeat|Simple_repeat	319.0	NM_001177319	21788.0	Mm.124316	NM_011576	ENSMUSG00000027082	Tfpi	A630013F22Rik|AW552122|EPI|LACI	tissue factor pathway inhibitor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-14086367-4	chr10	14086256	14086456	+	997.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010437, intron 2 of 8)	intron (NM_010437, intron 2 of 8)	119977.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	-2.18292257394068	-2.15545247547656	-2.03304972317742	-2.17058342868585	-2.18099422382073	-2.1536522739386	-2.16187909550322	-2.16936197735154	-0.683654500252594	0.846597994014493	1
Merged-chr5-138171200-4	chr5	138171098	138171298	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021392)	promoter-TSS (NM_021392)	68.0	NM_001356577	17220.0	Mm.378965	NM_008568	ENSMUSG00000029730	Mcm7	AI747533|Mcmd7|mCDC47	minichromosome maintenance complex component 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-65984257-4	chr5	65984158	65984358	+	937.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17134.0	NM_001081104	231252.0	Mm.140015	NM_001081104	ENSMUSG00000029205	Chrna9	2410015I05Rik|Acra9|EG666827|Gm8311	cholinergic receptor, nicotinic, alpha polypeptide 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-99353113-4	chr9	99353006	99353206	+	901.7958369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177775, intron 1 of 22)	ORR1E|LTR|ERVL-MaLR	5424.0	NM_177775	272636.0	Mm.490440	NM_177775	ENSMUSG00000037681	Esyt3	D930024E11|D9Ertd280e|Fam62c|mKIAA4186	extended synaptotagmin-like protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-84351462-4	chr15	84351340	84351540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25321.0	NM_001162500	64099.0	Mm.251356	NM_022321	ENSMUSG00000022439	Parvg	AI413459	parvin, gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-89123590-4	chr4	89123501	89123701	+	860.7333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151607, intron 1 of 3)	intron (NR_151607, intron 1 of 3)	4625.0	NR_151607	102637941.0	Mm.366358	NR_151607		Gm12602	-	predicted gene 12602	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4740212-3	chr16	4740088	4740288	+	808.583313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001136066, intron 1 of 5)	B3A|SINE|B2	-1425.0	NM_010443	15369.0	Mm.272866	NM_010443	ENSMUSG00000004070	Hmox2	HO-2|HO2	heme oxygenase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-66593579-3	chr9	66593495	66593695	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302116)	promoter-TSS (NM_001302116)	-480.0	NM_001302116	235441.0	Mm.32465	NM_144937	ENSMUSG00000032376	Usp3	AA409661|BC017156	ubiquitin specific peptidase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80903241-2	chr10	80903141	80903341	+	772.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_010722, exon 11 of 12)	exon (NM_010722, exon 11 of 12)	-2272.0	NM_013895	30055.0	Mm.142132	NM_013895	ENSMUSG00000020219	Timm13	D10Ertd378e|Tim9|Timm9	translocase of inner mitochondrial membrane 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-136892122-4	chr2	136892024	136892224	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001141946)	promoter-TSS (NM_001141946)	-44.0	NM_028834	74243.0	Mm.330612	NM_028201	ENSMUSG00000027281	Slx4ip	2210009G21Rik|2410004I22Rik|C85661|Slxip	SLX4 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132593092-4	chr4	132593010	132593210	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29043.0	NM_001081211	19204.0	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-55836513-2	chr16	55836413	55836613	+	601.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159395, intron 1 of 12)	intron (NM_001159395, intron 1 of 12)	2128.0	NM_030612	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-84150846-4	chr7	84150765	84150965	+	872.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133722, intron 1 of 2)	intron (NM_133722, intron 1 of 2)	1028.0	NM_133722	70178.0	Mm.23914	NM_133722	ENSMUSG00000038459	Abhd17c	2210412D01Rik|AL023007|Fam108c|Fam108c1	abhydrolase domain containing 17C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126944961-3	chr8	126944928	126945128	+	825.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024214, intron 1 of 4)	intron (NM_024214, intron 1 of 4)	893.0	NM_024214	67952.0	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141477814-4	chr4	141477702	141477902	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_019763, exon 12 of 16)	exon (NM_019763, exon 12 of 16)	33129.0	NM_009541	22642.0	Mm.389590	NM_009541	ENSMUSG00000006215	Zbtb17	AA589413|Lp-1|Miz1|Zfp100|mZ13	zinc finger and BTB domain containing 17	protein-coding	5.70834738749326	5.87039336318086	4.18174702381625	5.44814576625181	5.32237453857273	6.20968479888635	5.28807722644497	5.8000063846417	0.301418543802677	0.392665987715764	0.881258234308592
Merged-chr1-171610215-3	chr1	171610111	171610311	+	824.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2801.0	NM_001277968	17085.0	Mm.560	NM_008534	ENSMUSG00000004707	Ly9	AI893573|CD229|Lgp100|Ly-9|SLAMF3|T100	lymphocyte antigen 9	protein-coding	2.14487218218392	1.62604077971618	1.23331223363135	1.2058815369735	1.46114646013871	1.90802469981456	1.01818047095608	1.88294149442386	-0.0178720825438127	0.987933155329935	0.998431161219273
Merged-chr15-88753686-2	chr15	88753586	88753786	+	562.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_181412, intron 1 of 2)	B1_Mm|SINE|Alu	1975.0	NM_181412	223773.0	Mm.396622	NM_181412	ENSMUSG00000034333	Zbed4	1700009F06Rik	zinc finger, BED type containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-84539391-3	chr1	84539307	84539507	+	777.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152915, intron 4 of 12)	B4A|SINE|B4	-156432.0	NR_039588	100628595.0		NR_039588	ENSMUSG00000093254	Mir5126	mir-5126|mmu-mir-5126|mu-mir-5126	microRNA 5126	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-90877120-4	chr8	90877043	90877243	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177224, intron 2 of 39)	intron (NM_177224, intron 2 of 39)	48308.0	NM_177224	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	3.9866778781092	4.4511220124485	3.26002337968605	4.44426199720701	5.04538829398432	3.53310093176083	4.63934288276192	4.55309451830525	0.572865155392108	0.222572820275502	0.714202386450601
Merged-chr11-29515035-4	chr11	29514902	29515102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026465)	promoter-TSS (NM_026465)	31.0	NM_026465	67939.0	Mm.251087	NM_026465	ENSMUSG00000032673	Prorsd1	2010316F05Rik|Ncrna00117|Prdxdd1	prolyl-tRNA synthetase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-10134052-4	chr14	10133934	10134134	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360141, intron 5 of 9)	intron (NM_001360141, intron 5 of 9)	249939.0	NR_030680	100042415.0	Mm.235938	NR_030680	ENSMUSG00000089686	Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-134570509-2	chr4	134570409	134570609	+	565.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_207237, intron 8 of 11)	intron (NM_207237, intron 8 of 11)	-2658.0	NR_105829	102465216.0		NR_105829	ENSMUSG00000099289	Mir6403	Gm27992|mmu-mir-6403	microRNA 6403	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-83485906-4	chr4	83485859	83486059	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355203, intron 1 of 10)	CpG-10005	504.0	NM_001290527	101739.0	Mm.105331	NM_133948	ENSMUSG00000028484	Psip1	AA408851|AU015605|Dfs70|Ledgfa|Ledgfb|Psip2	PC4 and SFRS1 interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-76610878-4	chr2	76610778	76610978	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37116.0	NM_011871	23992.0	Mm.277250	NM_011871	ENSMUSG00000002731	Prkra	AV120107|PRK|Pact|RAX|lear	protein kinase, interferon inducible double stranded RNA dependent activator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-74311306-3	chr4	74311200	74311400	+	801.766663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356561, intron 5 of 20)	intron (NM_001356561, intron 5 of 20)	59421.0	NM_001356561	76804.0	Mm.209059	NM_144787	ENSMUSG00000028397	Kdm4c	2410141F18Rik|AA517467|Gasc1|Jmjd2c	lysine (K)-specific demethylase 4C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101466733-5	chr7	101466551	101466751	+	851.6381230000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152192, intron 3 of 31)	intron (NR_152192, intron 3 of 31)	-8725.0	NR_029791	387157.0		NR_029791	ENSMUSG00000065446	Mir139	Mirn139|mir-139|mmu-mir-139	microRNA 139	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32534520-4	chr2	32534442	32534642	+	908.6749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153560)	promoter-TSS (NM_153560)	-817.0	NM_153560	98952.0	Mm.4065	NM_153560	ENSMUSG00000039157	Fam102a	AI426465|C230093N12Rik|Eeig1	family with sequence similarity 102, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71511863-4	chr8	71511780	71511980	+	889.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_032398)	promoter-TSS (NM_032398)	-111.0	NM_032398	84094.0	Mm.260768	NM_032398	ENSMUSG00000034845	Plvap	MECA32|Pv1	plasmalemma vesicle associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-97033514-1	chr7	97033414	97033614	+	816.0	f1_c57bl6.idr	intron (NM_153591, intron 9 of 13)	ID_B1|SINE|B4	-48237.0	NM_001162477	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	0.125919439375796	-0.354297115594255	-0.359015577650724	0.467407181556386	-0.36783462823638	-0.353235219511551	-0.357973808699975	-0.362026627521059	-3.72857999873482	0.146194205611389	1
Merged-chr10-21601100-4	chr10	21601007	21601207	+	786.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027968, intron 2 of 2)	intron (NR_027968, intron 2 of 2)	7962.0	NR_027968	67692.0	Mm.54306	NM_183266	ENSMUSG00000050844	1700020N01Rik	-	RIKEN cDNA 1700020N01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115085029-2	chr11	115084929	115085129	+	974.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6402.0	NM_001163753	58222.0	Mm.143789	NM_021411	ENSMUSG00000020732	Rab37	B230331O03Rik|B230354I04Rik	RAB37, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-117512017-1	chr5	117511917	117512117	+	696.0	f1_c57bl6.idr	intron (NM_001312914, intron 3 of 19)	intron (NM_001312914, intron 3 of 19)	98015.0	NM_001312914	333050.0	Mm.437947	NM_001034873	ENSMUSG00000061578	Ksr2	-	kinase suppressor of ras 2	protein-coding	0.564611337236028	1.36811417526141	0.585522608847354	1.35232606608313	0.866514805613624	0.811201534104318	0.784791390913348	1.04760359918349	-0.744586849509569	0.625749113952073	0.980912176761026
Merged-chr11-119269869-2	chr11	119269769	119269969	+	832.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008064, intron 1 of 19)	intron (NM_008064, intron 1 of 19)	1906.0	NM_008064	14387.0	Mm.4793	NM_008064	ENSMUSG00000025579	Gaa	E430018M07Rik	glucosidase, alpha, acid	protein-coding	2.45943235654165	2.37931513404672	1.25644606336627	2.22904377290535	2.4028883020612	1.78832249145874	1.26348592202395	2.75607070366361	0.0557054414685468	0.957360923749746	0.998431161219273
Merged-chr7-41393399-4	chr7	41393320	41393520	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183167)	promoter-TSS (NM_183167)	-41.0	NM_001199330	233168.0	Mm.379390	NM_183167	ENSMUSG00000056383	AI987944	-	expressed sequence AI987944	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33885102-4	chr16	33884988	33885188	+	904.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010580, exon 5 of 15)	exon (NM_010580, exon 5 of 15)	55423.0	NM_001145884	16419.0	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-129715505-4	chr5	129715403	129715603	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356954)	promoter-TSS (NM_001356954)	6.0	NM_001356959	66258.0	Mm.249809	NM_025450	ENSMUSG00000034211	Mrps17	1810006P02Rik|Mprs17	mitochondrial ribosomal protein S17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-12491098-2	chr16	12490998	12491198	+	780.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-320292.0	NR_040507	75493.0	Mm.396146	NR_040507	ENSMUSG00000101565	1700003L19Rik	-	RIKEN cDNA 1700003L19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124672447-6	chr6	124672393	124672593	+	734.616699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149320, intron 1 of 11)	intron (NR_149320, intron 1 of 11)	9389.0	NM_145130	14792.0	Mm.273915	NM_145130	ENSMUSG00000004270	Lpcat3	C3f|Grcc3f|Lpcat|Lpeat|Lplat5|Lpsat|Mboat5|Moact5|Oact5|PTG	lysophosphatidylcholine acyltransferase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-43916142-4	chr5	43916057	43916257	+	814.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47348.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-134966318-2	chr5	134966218	134966418	+	893.1666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-19384.0	NM_009903	12740.0	Mm.7339	NM_009903	ENSMUSG00000047501	Cldn4	Cep-r|Cpetr|Cpetr1	claudin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-86339603-3	chr1	86339492	86339692	+	720.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11693.0	NR_028478	100303740.0	Mm.154378	NR_028478	ENSMUSG00000064837	Snora75	MBI-55	small nucleolar RNA, H/ACA box 75	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-142401443-4	chr5	142401346	142401546	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199068)	promoter-TSS (NM_199068)	-51.0	NM_199068	17425.0	Mm.24214	NM_010812	ENSMUSG00000056493	Foxk1	A630048H08Rik|AI463295|Gm10868|Mnf	forkhead box K1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-108384813-4	chr6	108384738	108384938	+	852.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 20 of 61)	intron (NM_010585, intron 20 of 61)	-104905.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-22622553-2	chr2	22622453	22622653	+	638.333374	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_008078, exon 1 of 16)	5' UTR (NM_008078, exon 1 of 16)	226.0	NM_008078	14417.0	Mm.4784	NM_008078	ENSMUSG00000026787	Gad2	6330404F12Rik|GAD(65)|GAD65|Gad-2	glutamic acid decarboxylase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-67167184-1	chr18	67167084	67167284	+	752.333313	f0_balb.idr	intron (NM_177137, intron 4 of 11)	intron (NM_177137, intron 4 of 11)	33624.0	NM_010307	14680.0	Mm.440746	NM_010307	ENSMUSG00000024524	Gnal	2610011C15Rik|9630020G10Rik|Galphaolf|Gna10|Golf	guanine nucleotide binding protein, alpha stimulating, olfactory type	protein-coding	1.1648269391192	0.765780020340621	0.752846275713902	1.46230391823313	1.56241329440686	1.1788193002717	0.755716773674856	1.65824526630468	1.0469891931982	0.473049993704668	0.926125823511231
Merged-chr5-125067323-1	chr5	125067223	125067423	+	623.0	f0_balb.idr	intron (NM_011424, intron 16 of 46)	intron (NM_011424, intron 16 of 46)	63848.0	NM_028443	73121.0	Mm.296138	NM_028443	ENSMUSG00000037962	Rflna	3110032G18Rik|Fam101a|cfm|cfm2	refilin A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-110808222-4	chr5	110808137	110808337	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347394, intron 3 of 27)	intron (NM_001347394, intron 3 of 27)	1844.0	NM_009469	22241.0	Mm.271898	NM_009469	ENSMUSG00000029512	Ulk1	AU041434|Unc51.1|mKIAA0722	unc-51 like kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-155629500-1	chr2	155629400	155629600	+	772.666687	f0_balb.idr	exon (NM_001085378, exon 29 of 42)	exon (NM_001085378, exon 29 of 42)	6620.0	NR_030757	735275.0		NR_030757	ENSMUSG00000076312	Mir499	Mirn499|mir-499|mmu-mir-499	microRNA 499	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-94515507-2	chr4	94515407	94515607	+	817.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026368, intron 5 of 5)	intron (NM_026368, intron 5 of 5)	41289.0	NM_026368	67770.0	Mm.35170	NM_026368	ENSMUSG00000028578	Caap1	5830433M19Rik|AI536248|CAAP	caspase activity and apoptosis inhibitor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-68112795-4	chr7	68112722	68112922	+	970.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010513, intron 2 of 20)	intron (NM_010513, intron 2 of 20)	151411.0	NM_030101	78444.0	Mm.425468	NM_030101	ENSMUSG00000030553	Pgpep1l	C330024D12Rik	pyroglutamyl-peptidase I-like	protein-coding	2.81488066401557	3.16072569848428	2.56712491733597	2.22787108667495	2.37944415299688	3.47208908722263	1.45389430586183	2.23989432647845	-0.252767342345883	0.766154019096971	0.998431161219273
Merged-chr2-73060034-4	chr2	73059940	73060140	+	897.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-79594.0	NM_001018042	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-51179401-4	chr17	51179306	51179506	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285991)	promoter-TSS (NM_001285991)	-54.0	NM_001285991	72238.0	Mm.120650	NM_028162	ENSMUSG00000023923	Tbc1d5	1600014N05Rik	TBC1 domain family, member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-8390640-3	chr17	8390511	8390711	+	850.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161832, intron 2 of 10)	intron (NM_001161832, intron 2 of 10)	-1143.0	NR_045795	100504601.0	Mm.365131	NR_045795	ENSMUSG00000097796	Gm16702	AU016609	predicted gene, 16702	ncRNA	1.42765915846553	0.972961864220977	0.951031963781108	2.07059981648654	1.96939597729012	0.977803294945527	1.57112413073899	2.384397086345	1.08751155226747	0.396528911420575	0.883358600789196
Merged-chr18-44380394-4	chr18	44380282	44380482	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027490)	promoter-TSS (NM_027490)	-118.0	NM_027490	70640.0	Mm.87629	NM_027490	ENSMUSG00000024472	Dcp2	2410015D23Rik|5730537H01Rik|AL118268	decapping mRNA 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-12730318-2	chr18	12730218	12730418	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028341, intron 10 of 13)	intron (NM_028341, intron 10 of 13)	-11037.0	NM_181731	71132.0	Mm.179740	NM_027687	ENSMUSG00000024430	Cabyr	1700016C01Rik|4933421A18Rik|CBP86|FSP-2	calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-24062872-2	chr11	24062772	24062972	+	622.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15184.0	NM_016707	14025.0	Mm.53687	NM_016707	ENSMUSG00000000861	Bcl11a	2810047E18Rik|BCL-11A|Ctip1|D930021L15Rik|Evi9|Evi9a|Evi9b|Evi9c|mKIAA1809	B cell CLL/lymphoma 11A (zinc finger protein)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-104340326-4	chr8	104340242	104340442	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024217)	promoter-TSS (NM_024217)	-252.0	NM_024217	68119.0	Mm.390108	NM_024217	ENSMUSG00000031875	Cmtm3	9430096L06Rik|AI413895|BNAS2|Cklfsf3	CKLF-like MARVEL transmembrane domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165981706-2	chr2	165981606	165981806	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F1|SINE|Alu	-10931.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-160195927-1	chr1	160195827	160196027	+	709.0	f1_balb.idr	intron (NM_001347121, intron 1 of 2)	intron (NM_001347121, intron 1 of 2)	595.0	NM_001347121	64659.0	Mm.29599	NM_025474	ENSMUSG00000058267	Mrps14	1810032L21Rik|AL022847|Rpms14	mitochondrial ribosomal protein S14	protein-coding	2.31835811166272	1.64215884049115	1.13428284393744	1.85178866049008	2.65369925192738	1.6541846052187	1.14036898719714	2.38496601161429	0.722305929880878	0.519305242415789	0.947641799425091
Merged-chr2-11777623-4	chr2	11777502	11777702	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001348237)	promoter-TSS (NM_001348237)	-17.0	NM_001348236	50755.0	Mm.24088	NM_015792	ENSMUSG00000058594	Fbxo18	AU015756|Fbh1|Fbx18	F-box protein 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141493050-2	chr7	141492950	141493150	+	728.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001142681)	TTS (NM_001142681)	16670.0	NM_001252588	64540.0	Mm.489619	NM_053082	ENSMUSG00000025511	Tspan4	AI325509|AI746565|D130042I01Rik|NAG-2|Tm4sf7|Tspan-4	tetraspanin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19097889-1	chr7	19097789	19097989	+	544.0	f1_c57bl6.idr	3' UTR (NM_011383, exon 3 of 3)	3' UTR (NM_011383, exon 3 of 3)	3345.0	NM_011383	20475.0	Mm.3410	NM_011383	ENSMUSG00000040841	Six5	Dmahp|MDMAHP|TrexBF	sine oculis-related homeobox 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-75158544-2	chr8	75158444	75158644	+	880.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	49035.0	NM_008566	17218.0	Mm.5048	NM_008566	ENSMUSG00000005410	Mcm5	AA617332|AI324988|AL033333|Cdc46|Mcmd5|P1-CDC46	minichromosome maintenance complex component 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-63865899-2	chr17	63865799	63865999	+	853.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037997, intron 1 of 18)	intron (NM_001037997, intron 1 of 18)	1918.0	NM_001037997	14158.0	Mm.23039	NM_008000	ENSMUSG00000000127	Fer	AV082135|C330004K01Rik|Fert|Fert2	fer (fms/fps related) protein kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-103055010-3	chr11	103054912	103055112	+	820.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008707, intron 4 of 11)	intron (NM_008707, intron 4 of 11)	25936.0	NM_001361706	72469.0	Mm.264743	NM_152813	ENSMUSG00000020937	Plcd3	2610205J15Rik|mKIAA1964	phospholipase C, delta 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-32877741-4	chr16	32877645	32877845	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027226)	promoter-TSS (NM_027226)	-39.0	NM_001356387	69823.0	Mm.12831	NM_027226	ENSMUSG00000022800	Fyttd1	2010005M05Rik|3830411L18Rik|3830421F13Rik|4933423A17Rik|AI098218|AW539567|C85190	forty-two-three domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-121256615-3	chr10	121256515	121256715	+	937.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53966.0	NR_152796	74647.0	Mm.370609	NR_152796	ENSMUSG00000112846	4930432O09Rik	-	RIKEN cDNA 4930432O09 gene	ncRNA	2.74671458597039	2.39122753024045	3.26544553429624	2.90090387289813	2.55387098768554	4.09244419647118	3.29086824193033	2.41412653533695	0.683033565469227	0.333802772119296	0.833904565495692
Merged-chr5-137850462-4	chr5	137850378	137850578	+	978.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7571.0	NM_133209	170741.0	Mm.347593	NM_133209	ENSMUSG00000066684	Pilrb1	FDFACT|Fdact|Pilrb	paired immunoglobin-like type 2 receptor beta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-47013255-8	chr7	47013093	47013293	+	844.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4779.0	NM_175318	101685.0	Mm.155687	NM_175318	ENSMUSG00000049516	Spty2d1	5830435K17Rik|AI852426|P16H6	SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105605113-4	chr8	105604933	105605133	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081241)	promoter-TSS (NM_001081241)	-196.0	NM_001081241	75687.0	Mm.41261	NM_001081241	ENSMUSG00000038604	Ripor1	2310066E14Rik|AI837433|Fam65a	RHO family interacting cell polarization regulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-114277388-2	chr7	114277288	114277488	+	731.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1272.0	NM_011965	26440.0	Mm.121265	NM_011965	ENSMUSG00000030751	Psma1	C2|HC2|Pros-30|alpha-type	proteasome (prosome, macropain) subunit, alpha type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-91712963-4	chr6	91712860	91713060	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009320, intron 2 of 14)	intron (NM_009320, intron 2 of 14)	28893.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-100195651-4	chr13	100195541	100195741	+	925.0750119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001126182, intron 2 of 15)	intron (NM_001126182, intron 2 of 15)	6481.0	NM_001126182	17948.0	Mm.89961	NM_010872	ENSMUSG00000078945	Naip2	Birc1b|Naip-rs6	NLR family, apoptosis inhibitory protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-180692798-4	chr2	180692704	180692904	+	998.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_111965)	promoter-TSS (NR_111965)	-756.0	NR_111965	23856.0	Mm.253836	NM_011805	ENSMUSG00000038914	Dido1	6720461J16Rik|D130048F08Rik|DATF-1|DIO-1|Datf1|dido	death inducer-obliterator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-98427357-4	chr7	98427262	98427462	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	C-rich|Low_complexity|Low_complexity	-13054.0	NM_001130693	14918.0	Mm.389928	NM_001034890	ENSMUSG00000074003	Gucy2d	-	guanylate cyclase 2d	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-27439344-4	chr3	27439257	27439457	+	990.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356953, intron 24 of 26)	intron (NM_001356953, intron 24 of 26)	68006.0	NM_177330	208188.0	Mm.194721	NM_177330	ENSMUSG00000051136	Ghsr	C530020I22Rik|GHRP|GHS-R|Ghsr1a	growth hormone secretagogue receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-24625741-4	chr16	24625607	24625807	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 5 of 12)	intron (NM_178665, intron 5 of 12)	-96148.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-84245976-4	chr15	84245872	84246072	+	729.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133167, intron 1 of 12)	L1MB8|LINE|L1	13929.0	NM_133167	170736.0	Mm.323892	NM_133167	ENSMUSG00000022438	Parvb	AI595373|AW742462|D15Gsk1|affixin	parvin, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114908776-2	chr11	114908676	114908876	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18735.0	NM_170758	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-98475638-2	chr15	98475538	98475738	+	663.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7045.0	NM_010679	16770.0	Mm.5074	NM_010679	ENSMUSG00000022991	Lalba	AW208827|Lyzg	lactalbumin, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-81144694-4	chr13	81144609	81144809	+	778.487488	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 87 of 89)	intron (NM_054053, intron 87 of 89)	180635.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117083640-4	chr11	117083544	117083744	+	968.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6296.0	NR_105853	102465258.0		NR_105853	ENSMUSG00000104740	Mir6516	mmu-mir-6516	microRNA 6516	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-64340577-2	chr7	64340477	64340677	+	578.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172742, exon 16 of 16)	3' UTR (NM_172742, exon 16 of 16)	33518.0	NM_177893	330554.0	Mm.236510	NM_177893	ENSMUSG00000033458	Fan1	6030441H18Rik|Mtmr15|mFAN1	FANCD2/FANCI-associated nuclease 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-32953529-4	chr19	32953430	32953630	+	972.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	195953.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-80476771-4	chr11	80476694	80476894	+	999.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009871)	promoter-TSS (NM_009871)	-229.0	NM_009871	12569.0	Mm.142275	NM_009871	ENSMUSG00000048895	Cdk5r1	Cdk5r|D11Bwg0379e|p25|p35	cyclin-dependent kinase 5, regulatory subunit 1 (p35)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-40446014-1	chr6	40445914	40446114	+	685.0	f0_balb.idr	intron (NM_201370, intron 2 of 11)	L2c|LINE|L2	3151.0	NM_201370	381759.0	Mm.20593	NM_201370	ENSMUSG00000037159	Wee2	Gm1065|Wee1B	WEE1 homolog 2 (S. pombe)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-56970114-2	chr1	56970014	56970214	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358580, intron 2 of 11)	intron (NM_001358580, intron 2 of 11)	1220.0	NM_139146	212712.0	Mm.145599	NM_139146	ENSMUSG00000038331	Satb2	mKIAA1034	special AT-rich sequence binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-36233100-2	chr2	36233000	36233200	+	735.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_008969, intron 2 of 10)	L1_Mus1|LINE|L1	2674.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-172206728-4	chr1	172206631	172206831	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001329869)	promoter-TSS (NM_001329869)	73.0	NM_001329871	18611.0	Mm.544	NM_011063	ENSMUSG00000013698	Pea15a	Mat1|PEA-15|Pea15|Pkcs15	phosphoprotein enriched in astrocytes 15A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-146402942-2	chr2	146402852	146403052	+	970.833374	f0_balb.idr|f1_balb.idr	intron (NM_001033348, intron 21 of 40)	intron (NM_001033348, intron 21 of 40)	109052.0	NM_001033348	241694.0	Mm.222310	NM_001033348	ENSMUSG00000037110	Ralgapa2	A230067G21Rik|AS250|BC053994|RGC2|pp250	Ral GTPase activating protein, alpha subunit 2 (catalytic)	protein-coding	1.97926481416924	2.47474765994796	1.97598554811447	2.11527278524727	3.28432559598707	3.94396353206634	4.55314074297152	2.12880548714258	2.71316275151852	0.000344855100481979	0.00820946725314045
Merged-chr12-110606338-4	chr12	110606244	110606444	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030238, intron 1 of 76)	Lx7|LINE|L1	4949.0	NM_030238	13424.0	Mm.181430	NM_030238	ENSMUSG00000018707	Dync1h1	9930018I23Rik|AI894280|DHC1|DHC1a|DNCL|Dnchc1|Dnec1|Dnecl|Loa|MAP1C|P22|Swl|mKIAA0325	dynein cytoplasmic 1 heavy chain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105304118-4	chr8	105304011	105304211	+	783.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_148952, intron 7 of 9)	intron (NM_148952, intron 7 of 9)	-1490.0	NM_172760	234683.0	Mm.237966	NM_172760	ENSMUSG00000014791	Elmo3	9930107J06|BC058752|CED-12|Ced12	engulfment and cell motility 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-56950867-4	chr9	56950762	56950962	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178374)	promoter-TSS (NM_178374)	-62.0	NM_178374	66069.0	Mm.220984	NM_178374	ENSMUSG00000055334	Snupn	0610031A09Rik|Rnut1|Snupn1	snurportin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-75653323-1	chr2	75653223	75653423	+	541.0	f1_balb.idr	Intergenic	ID_B1|SINE|B4	-5936.0	NM_146130	229279.0	Mm.316306	NM_053263	ENSMUSG00000059005	Hnrnpa3	2410013L13Rik|2610209F03Rik|2610510D13Rik|Hnrpa3	heterogeneous nuclear ribonucleoprotein A3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-121956549-3	chr14	121956437	121956637	+	702.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183031, intron 1 of 1)	intron (NM_183031, intron 1 of 1)	8656.0	NM_183031	321019.0	Mm.265618	NM_183031	ENSMUSG00000051212	Gpr183	Ebi2	G protein-coupled receptor 183	protein-coding	0.176952744743222	0.201097389458454	1.02236704727386	0.656459898889788	0.178480496705009	0.202854152421934	0.194996152370403	0.979734777786163	-0.643713932177239	0.755273492139506	1
Merged-chr1-152386624-4	chr1	152386528	152386728	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025677)	promoter-TSS (NM_025677)	54.0	NM_025677	66637.0	Mm.379120	NM_025677	ENSMUSG00000014980	Tsen15	5730449L18Rik|AL023077|Sen15	tRNA splicing endonuclease subunit 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-90267286-4	chr3	90267189	90267389	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201407, intron 1 of 27)	intron (NM_201407, intron 1 of 27)	775.0	NM_201407	229541.0	Mm.30571	NM_201407	ENSMUSG00000042404	Dennd4b	-	DENN/MADD domain containing 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-20962016-3	chr2	20961916	20962116	+	946.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001128084, intron 1 of 24)	intron (NM_001128084, intron 1 of 24)	5705.0	NM_001081364	71435.0	Mm.28507	NM_001081364	ENSMUSG00000036591	Arhgap21	5530401C11Rik|AA416458|ARHGAP10	Rho GTPase activating protein 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-137969397-3	chr2	137969318	137969518	+	970.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-287166.0	NM_001025431	228662.0	Mm.153405	NM_145534	ENSMUSG00000062098	Btbd3	mKIAA0952	BTB (POZ) domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-7140513-2	chr10	7140420	7140620	+	709.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_172546, intron 5 of 12)	intron (NM_172546, intron 5 of 12)	71717.0	NM_172546	215748.0	Mm.37984	NM_172546	ENSMUSG00000015202	Cnksr3	6820402C05|BC024086|Magi1	Cnksr family member 3	protein-coding	-0.29945009443856	-0.931040587966656	-0.94071194156305	-0.942966506639519	-0.94614913967941	-0.928365189978891	-0.755656562522293	-0.942572777343402	-1.97248099745043	0.52351396827674	1
Merged-chr1-82289347-2	chr1	82289247	82289447	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_010570, exon 1 of 2)	exon (NM_010570, exon 1 of 2)	2092.0	NM_010570	16367.0	Mm.4952	NM_010570	ENSMUSG00000055980	Irs1	G972R|IRS-1	insulin receptor substrate 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-43762567-2	chr13	43762467	43762667	+	788.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-22545.0	NM_009856	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	-0.257959281793067	-0.69383388118128	-0.696770512841311	-0.699025282169023	-0.702195158013022	-0.506478928686898	-0.696124185689148	-0.408164958374233	-0.0527355124074358	0.984874815112463	1
Merged-chr2-155274928-3	chr2	155274893	155275093	+	668.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1371.0	NM_025735	66734.0	Mm.196239	NM_025735	ENSMUSG00000027602	Map1lc3a	1010001H21Rik|4922501H04Rik|LC3|LC3a	microtubule-associated protein 1 light chain 3 alpha	protein-coding	0.877057799873555	0.609813897920511	0.249991341359998	0.244989999062214	0.808541715477043	0.617473529493861	0.251420112860101	0.245864117594207	-0.130440609742684	0.946692956033154	1
Merged-chr7-140125620-4	chr7	140125503	140125703	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346725)	promoter-TSS (NM_001346725)	-54.0	NM_001346725	212503.0	Mm.486735	NM_153783	ENSMUSG00000025464	Paox	2410012F02Rik|AI118225|Pao	polyamine oxidase (exo-N4-amino)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-64055114-2	chr15	64055014	64055214	+	669.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360037, intron 1 of 11)	intron (NM_001360037, intron 1 of 11)	4650.0	NM_001360038	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-84829453-1	chr2	84829353	84829553	+	554.0	f1_balb.idr	intron (NM_013899, intron 2 of 2)	MIR|SINE|MIR	2432.0	NM_013899	30059.0	Mm.21826	NM_013899	ENSMUSG00000027076	Timm10	Tim13|Timm13a	translocase of inner mitochondrial membrane 10	protein-coding	0.199517247668177	0.901978216908463	0.216737467449311	0.210309534810119	0.201132627379391	0.914071061471408	0.218565371101976	1.0132526541761	1.21358133522291	0.552653742344891	1
Merged-chr2-11186197-2	chr2	11186097	11186297	+	708.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008859, intron 1 of 17)	intron (NM_008859, intron 1 of 17)	13815.0	NM_008859	18761.0	Mm.329993	NM_008859	ENSMUSG00000026778	Prkcq	A130035A12Rik|AW494342|PKC-0|PKC-theta|PKCtheta|Pkcq	protein kinase C, theta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-58542035-3	chr9	58541945	58542145	+	971.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1105.0	NM_133983	102657.0	Mm.5356	NM_133983	ENSMUSG00000035914	Cd276	6030411F23Rik|AU016588|B7RP-2|B7h3	CD276 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-126320645-2	chr4	126320545	126320745	+	983.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133883, intron 1 of 5)	intron (NM_133883, intron 1 of 5)	1058.0	NM_133883	100206.0	Mm.11285	NM_133883	ENSMUSG00000042558	Adprhl2	AI836109|Arh3	ADP-ribosylhydrolase like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45815145-2	chr7	45815045	45815245	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001112701)	promoter-TSS (NM_001112701)	-829.0	NM_001112701	19158.0	Mm.272130	NM_011181	ENSMUSG00000003269	Cyth2	ARNO|CLM2|Pscd2	cytohesin 2	protein-coding	-1.84290330806959	-1.81297841501903	-1.82202794967551	-1.82946150688462	-1.69841214230253	-1.81101734310794	-1.67758883978339	-1.82813090369827	1.43472749533542	0.684151459466795	1
Merged-chr11-69850133-3	chr11	69850036	69850236	+	952.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_031880)	TTS (NM_031880)	3492.0	NR_033133	70310.0	Mm.28874	NM_023564	ENSMUSG00000019461	Plscr3	2210403O21Rik|2610037N06Rik|ESTM3|X83310	phospholipid scramblase 3	protein-coding	1.04236320822602	0.946026288260289	0.761319095965347	0.578151809490819	1.14242735507904	0.594543813963275	0.918337438574184	1.11922437375065	0.629742392894034	0.680477237388971	1
Merged-chr10-20114845-2	chr10	20114737	20114937	+	592.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008580, intron 21 of 29)	intron (NM_008580, intron 21 of 29)	-34083.0	NM_008635	17761.0	Mm.20928	NM_008635	ENSMUSG00000019996	Map7	E-MAP-115|MAP-7|Mtap7|R75000|mshi|mste|ste	microtubule-associated protein 7	protein-coding	-0.662826441749988	-1.00555184936033	-1.01675512286785	-1.01992432642343	-0.654846858003193	-1.00312405325568	-1.01421894731451	-1.01959449741028	0.0418081237259606	0.989738874530268	1
Merged-chr13-101693171-2	chr13	101693071	101693271	+	993.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024955)	promoter-TSS (NM_001024955)	-541.0	NM_001024955	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-44540443-4	chr11	44540320	44540520	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166553, intron 3 of 5)	MTD|LTR|ERVL-MaLR	21043.0	NM_001166553	74315.0	Mm.156771	NM_028862	ENSMUSG00000019189	Rnf145	3732413I11Rik|TMRF1	ring finger protein 145	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-38129937-4	chr1	38129833	38130033	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359287)	promoter-TSS (NM_001359287)	-267.0	NM_001359288	56210.0	Mm.389103	NM_019570	ENSMUSG00000026082	Rev1	1110027I23Rik|AU022044|Rev1l	REV1, DNA directed polymerase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80132701-2	chr7	80132601	80132801	+	667.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17351.0	NM_173011	269951.0	Mm.246432	NM_173011	ENSMUSG00000030541	Idh2	E430004F23|IDPm|Idh-2	isocitrate dehydrogenase 2 (NADP+), mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-58618731-3	chr13	58618628	58618828	+	880.888855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7851.0	NM_022317	114304.0	Mm.18188	NM_022317	ENSMUSG00000021553	Slc28a3	Cnt3	solute carrier family 28 (sodium-coupled nucleoside transporter), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-181864346-4	chr2	181864244	181864444	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025901)	promoter-TSS (NM_025901)	-16.0	NM_025901	67005.0	Mm.271986	NM_025901	ENSMUSG00000038628	Polr3k	12.3kDa|1500004O14Rik|AI196849|AU014893|C11|RPC10|RPC11	polymerase (RNA) III (DNA directed) polypeptide K	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117944041-2	chr11	117943941	117944141	+	560.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	25325.0	NM_007707	12702.0	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-3340033-4	chr15	3339888	3340088	+	855.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001048178, intron 6 of 8)	intron (NM_001048178, intron 6 of 8)	-36462.0	NM_001357801	100039139.0	Mm.455610	NM_001166063	ENSMUSG00000091119	Ccdc152	-	coiled-coil domain containing 152	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80115649-4	chr10	80115535	80115735	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011492)	promoter-TSS (NM_011492)	-168.0	NM_001301853	20869.0	Mm.44231	NM_011492	ENSMUSG00000003068	Stk11	AA408040|Lkb1|Par-4|R75140	serine/threonine kinase 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-18688974-4	chr2	18688911	18689111	+	887.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-10011.0	NM_001001334	381350.0	Mm.330024	NM_001001334	ENSMUSG00000037708	Spag6	Spag6l	sperm associated antigen 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30423033-7	chr7	30422897	30423097	+	977.4285890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172142)	promoter-TSS (NM_172142)	-278.0	NM_172142	243910.0	Mm.386878	NM_172142	ENSMUSG00000036931	Nfkbid	I-kappa-B-delta|IkappaBNS|ikB-delta	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-117677076-2	chr4	117676976	117677176	+	778.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_023178, intron 4 of 10)	intron (NM_023178, intron 4 of 10)	5149.0	NM_023178	66233.0	Mm.29142	NM_023178	ENSMUSG00000009640	Dmap1	1500016M21Rik|DNMAP1|DNMTAP1|Dmtap1|mKIAA1425	DNA methyltransferase 1-associated protein 1	protein-coding	-0.338182165200827	-0.325588952999992	0.228179768927427	-0.171729648400409	-0.337398362801659	-0.324655850691777	-0.328812162377371	0.19652637170654	-0.396373187334097	0.873929071909176	1
Merged-chr7-141568509-4	chr7	141568405	141568605	+	854.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357068, intron 1 of 21)	intron (NM_001357068, intron 1 of 21)	6325.0	NM_007459	11772.0	Mm.253090	NM_007459	ENSMUSG00000002957	Ap2a2	2410074K14Rik|AF006990|AW146353|Adtab|C78001|L25	adaptor-related protein complex 2, alpha 2 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-86908046-4	chr11	86907964	86908164	+	992.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4A|LINE|L1	85698.0	NM_001005341	77864.0	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-86968562-1	chr17	86968462	86968662	+	581.0	f1_balb.idr	intron (NM_145491, intron 2 of 4)	intron (NM_145491, intron 2 of 4)	5451.0	NM_145491	104215.0	Mm.826	NM_145491	ENSMUSG00000024143	Rhoq	Arhq|TC10A|Tc10	ras homolog family member Q	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-88275647-5	chr1	88275570	88275770	+	861.2999880000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172505, intron 2 of 4)	intron (NM_172505, intron 2 of 4)	1887.0	NM_172505	212427.0	Mm.384762	NM_172505		A730008H23Rik	Fleg1	RIKEN cDNA A730008H23 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-87105904-2	chr4	87105804	87106004	+	891.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_172426, intron 2 of 10)	MTD|LTR|ERVL-MaLR	122059.0	NM_001110240	76376.0	Mm.490487	NM_172426	ENSMUSG00000037996	Slc24a2	2810021B17Rik|6330417K15Rik|AI847460|Nckx2	solute carrier family 24 (sodium/potassium/calcium exchanger), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101378573-2	chr7	101378473	101378673	+	965.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001040112, intron 1 of 30)	intron (NM_001040112, intron 1 of 30)	451.0	NM_001040112	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-93034158-4	chr16	93034069	93034269	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-208095.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-109917577-4	chr2	109917475	109917675	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172671)	promoter-TSS (NM_172671)	-72.0	NM_172671	107515.0	Mm.277351	NM_172671	ENSMUSG00000050199	Lgr4	9130225G07|A330106J01Rik|A930009A08Rik|Gpr48	leucine-rich repeat-containing G protein-coupled receptor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34250747-3	chr17	34250657	34250857	+	876.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11852.0	NM_010389	15002.0	Mm.327358	NM_010389	ENSMUSG00000041538	H2-Ob	A-beta-2|A-beta2|H-2Ab|H-2I|H-2Ob|H2-Ab|H2-Ab2|H2-IAb2|Ob	histocompatibility 2, O region beta locus	protein-coding	3.26307084371524	3.72297837792007	3.24319678286833	3.13332335415748	5.48150886442449	5.23526641199057	6.00681735492462	4.97811718281519	2.68422022495199	8.11748060088157e-11	1.78158900456178e-08
Merged-chr7-126862450-4	chr7	126862376	126862576	+	913.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172746, exon 1 of 7)	exon (NM_172746, exon 1 of 7)	504.0	NM_172746	233876.0	Mm.363427	NM_172746	ENSMUSG00000042606	Hirip3	B130036O03|C86302	HIRA interacting protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117223174-2	chr10	117223074	117223274	+	870.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_026570, intron 1 of 6)	intron (NM_026570, intron 1 of 6)	1333.0	NM_026570	64050.0	Mm.233529	NM_026570	ENSMUSG00000020171	Yeats4	4930573H17Rik|B230215M10Rik|GAS41|NuBI-1	YEATS domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-85492497-4	chr8	85492441	85492641	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173866)	promoter-TSS (NM_173866)	-76.0	NM_173866	108682.0	Mm.200423	NM_173866	ENSMUSG00000031700	Gpt2	4631422C05Rik|ALT2|AU014768|AU041193|C87201	glutamic pyruvate transaminase (alanine aminotransferase) 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-95844478-4	chr13	95844379	95844579	+	985.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027711, intron 1 of 35)	intron (NM_027711, intron 1 of 35)	47443.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-111081786-2	chr9	111081686	111081886	+	921.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-24268.0	NM_001302376	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125000209-2	chr6	125000109	125000309	+	633.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145926, intron 3 of 5)	B2_Mm1a|SINE|B2	1599.0	NM_001145926	319352.0	Mm.295327	NM_175696	ENSMUSG00000030329	Pianp	AI255183|AU067746|C530028O21Rik|Panp	PILR alpha associated neural protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-63558681-4	chr4	63558564	63558764	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356354)	promoter-TSS (NM_001356354)	-99.0	NM_001356355	230279.0	Mm.41523	NM_144905	ENSMUSG00000045917	Tmem268	6330416G13Rik|AW492431|bM230C2.2	transmembrane protein 268	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-94716916-4	chr9	94716872	94717072	+	863.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177909, intron 4 of 15)	Lx9|LINE|L1	-34857.0	NR_106116	102465763.0		NR_106116	ENSMUSG00000098251	Mir7656	Gm27614|mmu-mir-7656	microRNA 7656	ncRNA	-1.06932346315282	-1.04545378193536	-0.220844647149311	-1.06494782147003	-1.06867040657128	-1.04264807175102	-1.05547001227371	-1.06448932552894	-3.08190232315036	0.346744811462451	1
Merged-chr3-97948830-2	chr3	97948730	97948930	+	952.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033779, intron 1 of 1)	intron (NM_001033779, intron 1 of 1)	18657.0	NM_001033779	433632.0	Mm.212421	NM_001033779		Gm5544	EG433632	predicted gene 5544	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-72797252-4	chr9	72797146	72797346	+	990.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10028.0	NM_175485	235472.0	Mm.31696	NM_175485	ENSMUSG00000036030	Prtg	A230098A12Rik|Igdcc5	protogenin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-71908171-1	chr6	71908071	71908271	+	543.0	f1_balb.idr	promoter-TSS (NM_009088)	promoter-TSS (NM_009088)	591.0	NR_155285	69956.0	Mm.30256	NM_027275	ENSMUSG00000063884	Ptcd3	2610034F17Rik|2810422B04Rik|AA589622|AU045708|MRP-S39	pentatricopeptide repeat domain 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-77258264-2	chr10	77258164	77258364	+	884.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_026944, intron 1 of 1)	intron (NR_026944, intron 1 of 1)	959.0	NR_026944	100169878.0	Mm.420901	NR_026944	ENSMUSG00000078444	Gm10941	-	predicted gene 10941	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-54409419-4	chr14	54409316	54409516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253680)	promoter-TSS (NM_001253680)	56.0	NM_001253680	20540.0	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-6278224-2	chr2	6278124	6278324	+	596.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_040333, intron 3 of 6)	Lx5b|LINE|L1	-44533.0	NM_001080548	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	-0.652730458705985	-0.901230504172763	-0.90922183295875	-0.911372894819538	-0.352564959149449	-0.898600369853294	-0.908605972400679	-0.910997479715934	1.18941392580168	0.704270754228478	1
Merged-chr11-116368305-3	chr11	116368211	116368411	+	860.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027258, intron 2 of 18)	intron (NM_027258, intron 2 of 18)	-32957.0	NM_008240	15223.0	Mm.378938	NM_008240	ENSMUSG00000034227	Foxj1	FKHL-13|HFH-4|Hfh4	forkhead box J1	protein-coding	-1.84456824087626	-1.81369603968745	-1.82303204814395	-1.83070092346192	-1.84240106943552	-1.51787681909439	-1.82091858046888	-1.82932819844659	1.64481029852639	0.639921510788462	1
Merged-chr8-120721159-2	chr8	120721059	120721259	+	998.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15199.0	NM_008320	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-18568760-4	chr8	18568657	18568857	+	865.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26374.0	NM_173189	244329.0	Mm.235296	NM_173189	ENSMUSG00000039842	Mcph1	5430437K10Rik|BRIT1|D030046N04Rik|MCT|Tg(HLA-A2.1)1Enge	microcephaly, primary autosomal recessive 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-82835808-3	chr6	82835710	82835910	+	914.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	46043.0	NR_040520	69652.0	Mm.96357	NR_040520	ENSMUSG00000100291	2310069B03Rik	-	RIKEN cDNA 2310069B03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106305535-3	chr11	106305437	106305637	+	727.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3641.0	NM_008117	14599.0	Mm.343934	NM_008117	ENSMUSG00000020713	Gh	Gh1|Ghb1	growth hormone	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-89175636-4	chr15	89175540	89175740	+	987.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138749, intron 1 of 37)	intron (NM_138749, intron 1 of 37)	-1689.0	NM_001159521	140570.0	Mm.267514	NM_138749	ENSMUSG00000036606	Plxnb2	Debt|plexin-B2	plexin B2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-76452156-2	chr11	76452056	76452256	+	585.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346670, intron 14 of 21)	intron (NM_001346670, intron 14 of 21)	16309.0	NM_001291186	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-21975018-4	chr13	21974912	21975112	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6169.0	NM_001162928	195236.0	Mm.204664	NM_001162928	ENSMUSG00000016982	Pom121l2	Gm24	POM121 membrane glycoprotein-like 2 (rat)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-64493058-2	chr17	64492958	64493158	+	584.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	52252.0	NR_105848	102465228.0		NR_105848	ENSMUSG00000098984	Mir6420	Gm28007|mmu-mir-6420	microRNA 6420	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-34436500-2	chr1	34436400	34436600	+	803.75	f1_balb.idr|f1_c57bl6.idr	TTS (NM_027159)	TTS (NM_027159)	3172.0	NM_027159	69668.0	Mm.379170	NM_027159	ENSMUSG00000042111	Ccdc115	2310061I09Rik|Ccp1	coiled-coil domain containing 115	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127586840-2	chr10	127586740	127586940	+	542.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 15 of 88)	intron (NM_008512, intron 15 of 88)	34308.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-83742969-1	chr2	83742869	83743069	+	788.333313	f0_balb.idr	intron (NM_008402, intron 2 of 29)	intron (NM_008402, intron 2 of 29)	18572.0	NM_008402	16410.0	Mm.227	NM_008402	ENSMUSG00000027087	Itgav	1110004F14Rik|2610028E01Rik|CD51|D430040G12Rik	integrin alpha V	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-103324155-4	chr15	103324062	103324262	+	973.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356627, intron 2 of 7)	intron (NM_001356627, intron 2 of 7)	10176.0	NM_001356627	29813.0	Mm.14099	NM_013866	ENSMUSG00000000552	Zfp385a	Hzf|Zfp385|Znf385a	zinc finger protein 385A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-16687848-2	chr1	16687751	16687951	+	809.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016923)	promoter-TSS (NM_016923)	-605.0	NM_016923	17087.0	Mm.116844	NM_016923	ENSMUSG00000025779	Ly96	ESOP-1|MD-2|MD2	lymphocyte antigen 96	protein-coding	1.31429872035525	1.69983540636011	1.28189255726206	1.10509255711095	1.32423728221268	1.60442837769599	1.42930765518403	1.10877550290783	0.026348211036881	0.982336198168965	0.998431161219273
Merged-chr1-85105516-1	chr1	85105416	85105616	+	758.0	f1_balb.idr	intron (NM_213615, intron 1 of 6)	B3A|SINE|B2	4337.0	NM_213615	381287.0	Mm.487565	NM_213615	ENSMUSG00000089844	A530032D15Rik	Gm1888	RIKEN cDNA A530032D15Rik gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-80982591-2	chr17	80982491	80982691	+	643.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026516, intron 1 of 3)	intron (NM_026516, intron 1 of 3)	37959.0	NM_026516	68027.0	Mm.357108	NM_026516	ENSMUSG00000024245	Tmem178	2810417M05Rik|Tmem178a	transmembrane protein 178	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-59220666-3	chr3	59220592	59220792	+	680.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357010, intron 1 of 3)	intron (NM_001357010, intron 1 of 3)	-9810.0	NM_028808	74191.0	Mm.90067	NM_028808	ENSMUSG00000036362	P2ry13	2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174	purinergic receptor P2Y, G-protein coupled 13	protein-coding	1.40306565991014	1.94371269165884	1.53929256256083	0.818312608264327	0.798650942584147	1.85782228225043	1.4147175016394	0.820701013492626	-0.596494948037589	0.668479997321012	0.99330435992635
Merged-chr11-31812988-1	chr11	31812888	31813088	+	669.0	f1_balb.idr	intron (NR_102312, intron 1 of 4)	B3|SINE|B2	11559.0	NR_102310	414116.0	Mm.150222	NR_102310	ENSMUSG00000085772	D630024D03Rik	-	RIKEN cDNA D630024D03 gene	ncRNA	1.56091981574247	1.46615280138507	2.43993322663929	3.05699090177758	2.37860207821951	3.35560214409756	3.37947757312759	2.72812141540725	1.34155231321233	0.11510566148376	0.531850215590044
Merged-chr1-127981228-4	chr1	127981104	127981304	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285945, intron 12 of 20)	intron (NM_001285945, intron 12 of 20)	112431.0	NM_178690	226407.0	Mm.489713	NM_178690	ENSMUSG00000036104	Rab3gap1	1700003B17Rik|4732493F09Rik|AL117896|Rab3gap|p130	RAB3 GTPase activating protein subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-40954913-4	chr15	40954813	40955013	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356998, intron 4 of 6)	intron (NM_001356998, intron 4 of 6)	-218788.0	NR_151516	100418302.0		NR_151516		4930555K19Rik	-	leucine rich repeat and sterile alpha motif containing 1 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-155812894-4	chr1	155812789	155812989	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023268)	promoter-TSS (NM_023268)	10.0	NM_023268	104009.0	Mm.27035	NM_023268	ENSMUSG00000033684	Qsox1	1300003H02Rik|QSOX|Qscn6|SOx|b2b2673Clo	quiescin Q6 sulfhydryl oxidase 1	protein-coding	5.88453012137187	5.26842572918201	5.6193105057943	6.25801564810354	6.04943145491967	5.70687925740164	5.62938893457621	6.20459818341744	0.123001315323956	0.653163799685723	0.986651124875732
Merged-chr4-40156296-4	chr4	40156212	40156412	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007386, intron 1 of 20)	intron (NM_007386, intron 1 of 20)	13047.0	NM_007386	11428.0	Mm.331547	NM_007386	ENSMUSG00000028405	Aco1	Aco-1|Irebp|Irp1	aconitase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3624147-4	chr4	3624042	3624242	+	913.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32364.0	NR_040643	70143.0	Mm.417835	NR_040643	ENSMUSG00000085394	2210414B05Rik	-	RIKEN cDNA 2210414B05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126776915-2	chr8	126776815	126777015	+	650.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TTTTG)n|Simple_repeat|Simple_repeat	-72105.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-119964766-2	chr4	119964666	119964866	+	788.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_010657, intron 1 of 8)	intron (NM_010657, intron 1 of 8)	150088.0	NM_010657	16656.0	Mm.302758	NM_010657	ENSMUSG00000028634	Hivep3	2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3	human immunodeficiency virus type I enhancer binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-181430239-2	chr1	181430139	181430339	+	803.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028408, intron 3 of 5)	intron (NM_028408, intron 3 of 5)	77611.0	NM_001160211	72978.0	Mm.338083	NM_028408	ENSMUSG00000026514	Cnih3	2900075G08Rik|CNIH-3	cornichon family AMPA receptor auxiliary protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-37655729-4	chr18	37655629	37655829	+	970.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301259, intron 1 of 3)	intron (NM_001301259, intron 1 of 3)	-6216.0	NM_033584	93709.0	Mm.247203	NM_033584	ENSMUSG00000103144	Pcdhga1	-	protocadherin gamma subfamily A, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75573341-4	chr11	75573241	75573441	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_173388, exon 14 of 14)	3' UTR (NM_173388, exon 14 of 14)	-14738.0	NM_008850	18738.0	Mm.3128	NM_008850	ENSMUSG00000017781	Pitpna	Pitpn|vb|vibrator	phosphatidylinositol transfer protein, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-5062870-2	chr2	5062770	5062970	+	806.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356487, intron 1 of 13)	intron (NM_001356487, intron 1 of 13)	1247.0	NM_181848	71648.0	Mm.116942	NM_181848	ENSMUSG00000026672	Optn	4930441O07Rik|FIP2|HYPL|NRP	optineurin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-74217515-2	chr18	74217415	74217615	+	857.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028868, intron 3 of 14)	intron (NM_028868, intron 3 of 14)	1303.0	NM_028868	74322.0	Mm.17537	NM_028868	ENSMUSG00000024560	Cxxc1	2410002I16Rik|5830420C16Rik|AI426635|Cfp1|Cgbp|PHF18	CXXC finger 1 (PHD domain)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-94668871-4	chr9	94668777	94668977	+	993.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1015.0	NM_177909	331004.0	Mm.326125	NM_177909	ENSMUSG00000031129	Slc9a9	5730527A11Rik|9930105B05|AI854429|Nhe9	solute carrier family 9 (sodium/hydrogen exchanger), member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-72736547-1	chr1	72736447	72736647	+	985.0	f0_balb.idr	Intergenic	Intergenic	25287.0	NM_009084	19981.0	Mm.21529	NM_009084	ENSMUSG00000046330	Rpl37a	-	ribosomal protein L37a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-79673898-4	chr11	79673803	79674003	+	747.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045898, intron 2 of 2)	intron (NR_045898, intron 2 of 2)	1183.0	NR_045898	72218.0	Mm.443271	NR_045898	ENSMUSG00000086569	Rab11fip4os2	1700020F10Rik|4930542H20Rik|Rab11fib4os2	RAB11 family interacting protein 4 (class II), opposite strand 2	ncRNA	-1.8429182434137	-1.8129848525291	-1.82203695700074	-1.54461076807193	-1.84081697472045	-1.81102322372834	-1.81998775896484	-1.82814164409203	-1.43114970378833	0.684630132144154	1
Merged-chr5-115273989-3	chr5	115273861	115274061	+	833.694458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-1066.0	NM_001302449	50849.0	Mm.30051	NM_016698	ENSMUSG00000041740	Rnf10	AA675014|RIE2|mKIAA0262	ring finger protein 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-74748938-4	chr1	74748831	74749031	+	754.854187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153744)	promoter-TSS (NM_153744)	24.0	NM_153744	241113.0	Mm.166501	NM_153744	ENSMUSG00000006542	Prkag3	AMPKg3L|AMPKg3S|Amkg3|Ampkg3	protein kinase, AMP-activated, gamma 3 non-catalytic subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131472291-2	chr1	131472191	131472391	+	902.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081011, intron 2 of 22)	GA-rich|Low_complexity|Low_complexity	55070.0	NM_001081011	14270.0	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-48493936-3	chr9	48493842	48494042	+	903.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144948, intron 2 of 4)	ID_B1|SINE|B4	1388.0	NM_001326355	67010.0	Mm.76911	NM_144948	ENSMUSG00000042396	Rbm7	1200007M24Rik|1500011D06Rik|AU041934|AW554393	RNA binding motif protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165890816-2	chr2	165890716	165890916	+	688.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-5978.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95982337-3	chr3	95982231	95982431	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1H-int|LTR|ERVL-MaLR	-3179.0	NR_045872	668224.0	Mm.357766	NR_045872		Gm9054	EG668224	predicted gene 9054	ncRNA	3.19644065082976	3.41016998599742	4.03613630496858	4.5418600008895	5.59211774727285	5.13444536541775	4.27154751098144	5.5403595296758	1.64897041985981	0.000205344935390184	0.00552405501078796
Merged-chr13-107892175-4	chr13	107892083	107892283	+	983.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2119.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120623818-2	chr11	120623718	120623918	+	666.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153056, intron 3 of 9)	intron (NM_153056, intron 3 of 9)	1058.0	NR_105901	102465565.0		NR_105901	ENSMUSG00000098282	Mir6936	Gm27574|mmu-mir-6936	microRNA 6936	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-79089570-4	chr12	79089441	79089641	+	937.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029988, exon 1 of 4)	exon (NM_029988, exon 1 of 4)	129.0	NM_029988	110417.0	Mm.268317	NM_029988	ENSMUSG00000021120	Pigh	2210416H01Rik|A930028P05Rik	phosphatidylinositol glycan anchor biosynthesis, class H	protein-coding	0.541616873206051	1.34137409649403	0.754467415559901	1.01553821558257	0.84192432536034	0.786397435028502	1.29439838690052	0.555684091163098	-0.235889238101983	0.878443616891146	0.998431161219273
Merged-chr14-72825742-2	chr14	72825644	72825844	+	706.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-115741.0	NM_207636	319448.0	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	-0.560497821030104	-0.819795511076975	-0.823605675387312	-0.826030738299175	-0.82945404380789	-0.816968571349669	-0.822912046642795	-0.183097769467707	1.41976981856536	0.639649097156525	1
Merged-chr19-5291730-3	chr19	5291622	5291822	+	802.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030109, intron 4 of 20)	intron (NM_030109, intron 4 of 20)	3733.0	NM_030109	319322.0	Mm.196532	NM_030109	ENSMUSG00000024853	Sf3b2	145kDa|2610311M13Rik|2810441F20Rik|B230398H18Rik|SAP145|SF3b1|SF3b145|SF3b150	splicing factor 3b, subunit 2	protein-coding	-0.289851946104314	-0.737899168765768	-0.740932179010924	-0.743264539078787	-0.280173431323445	-0.737213951634147	-0.740264187498491	-0.742857569821679	0.0418983010157508	0.98887086484455	1
Merged-chr3-19986309-2	chr3	19986209	19986409	+	861.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001276248, intron 15 of 19)	Lx4B|LINE|L1	29255.0	NM_001276248	12870.0	Mm.13787	NM_007752	ENSMUSG00000003617	Cp	D3Ertd555e	ceruloplasmin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94521103-2	chr10	94521003	94521203	+	988.099976	f1_balb.idr|f1_c57bl6.idr	intron (NM_172051, intron 1 of 3)	intron (NM_172051, intron 1 of 3)	6246.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-60262581-4	chr10	60262464	60262664	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15064.0	NM_001146123	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80501101-4	chr7	80500997	80501197	+	927.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042527, intron 7 of 21)	intron (NM_001042527, intron 7 of 21)	33901.0	NM_007550	12144.0	Mm.12932	NM_007550	ENSMUSG00000030528	Blm	-	Bloom syndrome, RecQ like helicase	protein-coding	0.994466400690306	0.854102656271086	1.07234860087676	2.09329530516598	1.65902506643073	2.10296373447906	1.2771624359005	0.822407579306672	0.546890934474629	0.680616106757845	0.995614734074692
Merged-chr10-94558472-2	chr10	94558372	94558572	+	571.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359760, intron 1 of 3)	B2_Mm2|SINE|B2	7552.0	NM_001359760	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-33941238-2	chr17	33941168	33941368	+	913.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001185182)	promoter-TSS (NM_001185182)	545.0	NM_020603	57315.0	Mm.2437	NM_020603	ENSMUSG00000024312	Wdr46	2310007I04Rik|Bing4|C78447|C78559	WD repeat domain 46	protein-coding	2.36613485589534	0.567292690722122	0.808462950707607	0.533063892898043	1.7123205977561	0.853296209686017	0.552520880693724	0.784328504717277	-0.881560190237343	0.562623383723062	0.960362415684079
Merged-chr16-32682468-2	chr16	32682368	32682568	+	744.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289443, intron 5 of 5)	intron (NM_001289443, intron 5 of 5)	9314.0	NM_001289443	51789.0	Mm.251115	NM_016788	ENSMUSG00000022791	Tnk2	Ack|Ack-1|Ack1|Cdgip|Pyk1	tyrosine kinase, non-receptor, 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-89176339-1	chr15	89176239	89176439	+	541.0	f1_c57bl6.idr	intron (NM_138749, intron 1 of 37)	intron (NM_138749, intron 1 of 37)	-2388.0	NM_001159521	140570.0	Mm.267514	NM_138749	ENSMUSG00000036606	Plxnb2	Debt|plexin-B2	plexin B2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-84166785-2	chr15	84166685	84166885	+	778.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1031.0	NM_054088	116939.0	Mm.390817	NM_054088	ENSMUSG00000041653	Pnpla3	Adpn	patatin-like phospholipase domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99144857-1	chr7	99144757	99144957	+	636.0	f1_balb.idr	Intergenic	Intergenic	-3713.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	0.377348198678594	0.446024336797123	0.699058535755576	0.866769604549291	0.236757738522094	0.751686179958826	0.249923689567717	0.244503415732638	-1.51450110108772	0.416391823888843	1
Merged-chr1-173350126-3	chr1	173350021	173350221	+	906.355591	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053199, intron 1 of 8)	intron (NM_053199, intron 1 of 8)	-16618.0	NM_010045	13349.0	Mm.6393	NM_010045	ENSMUSG00000037872	Ackr1	AA162249|CCBP1|CD234|Darc|Dfy|ESTM35|FY|GPD	atypical chemokine receptor 1 (Duffy blood group)	protein-coding	2.54392594138069	1.58343535264315	2.21538426596938	3.2576020487127	2.91535829072837	2.88004740456183	3.1564147475246	3.06110291227552	0.838775785481553	0.275504038240358	0.77982362793126
Merged-chr5-18009342-4	chr5	18009220	18009420	+	966.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081143, intron 5 of 7)	intron (NM_001081143, intron 5 of 7)	46750.0	NM_001081143	242851.0	Mm.332230	NM_001081143	ENSMUSG00000028777	Gnat3	Ggust|Gtn	guanine nucleotide binding protein, alpha transducing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-102193036-2	chr15	102192936	102193136	+	878.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359128, intron 3 of 15)	intron (NM_001359128, intron 3 of 15)	-3993.0	NM_144942	246277.0	Mm.296382	NM_144942	ENSMUSG00000023044	Csad	Csd	cysteine sulfinic acid decarboxylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-184573619-3	chr1	184573482	184573682	+	669.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15891.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-30908546-2	chr5	30908446	30908646	+	602.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024460)	promoter-TSS (NM_024460)	-758.0	NM_024460	67695.0	Mm.21450	NM_024460	ENSMUSG00000038803	Ost4	2310016E02Rik	oligosaccharyltransferase complex subunit 4 (non-catalytic)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-27450784-2	chr7	27450655	27450855	+	854.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_144923, intron 1 of 4)	MLTR14|LTR|ERV1	-1663.0	NM_001290525	233016.0	Mm.24021	NM_144923	ENSMUSG00000040466	Blvrb	-	biliverdin reductase B (flavin reductase (NADPH))	protein-coding	-0.600131663494264	-0.72616097923899	-0.729067813644621	-0.731300280234197	-0.278404001992602	-0.725503688128467	-0.412257974709818	-0.730910921595385	2.1943212608733	0.427814755397567	1
Merged-chr18-32352819-4	chr18	32352722	32352922	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-24395.0	NM_001083334	30948.0	Mm.4383	NM_009668	ENSMUSG00000024381	Bin1	ALP-1|Amphl|BRAMP-2|SH3P9	bridging integrator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3776766-9	chr4	3776652	3776852	+	811.9198610000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 10 of 12)	intron (NM_001111096, intron 10 of 12)	58903.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	2.17503721449855	1.99088937077031	1.1374887476215	2.4674119916719	1.30278572378436	2.14530179624681	1.14378187793677	2.5558182653878	-0.241860709742029	0.830836481876223	0.998431161219273
Merged-chr19-5800255-7	chr19	5800134	5800334	+	957.5238039999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_002847, exon 1 of 1)	non-coding (NR_002847, exon 1 of 1)	2438.0	NR_002847	72289.0	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	3.37842478159218	3.02200923324248	3.0905543715931	2.26592494721165	2.9471551406712	2.43590542608652	1.49722255838729	2.27800717280682	-1.15039206163199	0.151076706990751	0.603669515033869
Merged-chr17-83903618-4	chr17	83903500	83903700	+	980.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49182.0	NR_155491	320021.0	Mm.379475	NR_155490		C430042M11Rik	-	RIKEN cDNA C430042M11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-9767566-3	chr13	9767485	9767685	+	581.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2264.0	NM_144516	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59621688-1	chr15	59621588	59621788	+	840.0	f1_balb.idr	Intergenic	Intergenic	-26966.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	-1.50460665725823	-1.47273594074179	-1.33072467622262	-1.33864158988109	-1.50236939188774	-1.47064735292826	-1.48019208383848	-1.3372244661214	-0.74082845380588	0.818065781314932	1
Merged-chr2-10979254-1	chr2	10979154	10979354	+	770.0	f0_balb.idr	Intergenic	Intergenic	-193128.0	NM_008859	18761.0	Mm.329993	NM_008859	ENSMUSG00000026778	Prkcq	A130035A12Rik|AW494342|PKC-0|PKC-theta|PKCtheta|Pkcq	protein kinase C, theta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-94581416-3	chr3	94581317	94581517	+	868.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001082484, intron 1 of 11)	intron (NM_001082484, intron 1 of 11)	1299.0	NM_001082484	76742.0	Mm.28160	NM_029721	ENSMUSG00000028136	Snx27	5730552M22Rik|ESTM45|ESTM47|R75405	sorting nexin family member 27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-114933997-4	chr9	114933890	114934090	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175380)	promoter-TSS (NM_175380)	-3.0	NM_175380	333433.0	Mm.38198	NM_175380	ENSMUSG00000050627	Gpd1l	2210409H23Rik|D9Ertd660e	glycerol-3-phosphate dehydrogenase 1-like	protein-coding	5.45482085593822	5.21524248013987	5.970409230554	5.37859045642602	4.94135976761332	5.52786934434013	5.5733243161557	4.74596361715913	-0.346390604877737	0.269277048211985	0.772792064530551
Merged-chr18-72210431-2	chr18	72210331	72210531	+	545.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007831, intron 1 of 28)	Lx3A|LINE|L1	140638.0	NM_007831	13176.0	Mm.167882	NM_007831	ENSMUSG00000060534	Dcc	C030036D22Rik|Igdcc1	deleted in colorectal carcinoma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-97336385-2	chr1	97336285	97336485	+	654.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3_Mus|LINE|L1	-208082.0	NM_028942	74441.0	Mm.60362	NM_028942	ENSMUSG00000026331	Slco6c1	4933404A18Rik|C79179	solute carrier organic anion transporter family, member 6c1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-21000432-3	chr18	21000343	21000543	+	818.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001303005)	promoter-TSS (NM_001303005)	-857.0	NM_019706	56515.0	Mm.253542	NM_019706	ENSMUSG00000024317	Rnf138	2410015A17Rik|2810480D20Rik|STRIN|Trif|Trif-d	ring finger protein 138	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-16829380-4	chr16	16829297	16829497	+	893.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015773)	promoter-TSS (NM_015773)	-34.0	NM_015773	50525.0	Mm.31701	NM_015773	ENSMUSG00000022783	Spag6l	PF16|Spag6|Spag6l1	sperm associated antigen 6-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-68708871-2	chr3	68708771	68708971	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	17447.0	NM_008351	16159.0	Mm.103783	NM_008351	ENSMUSG00000027776	Il12a	IL-12p35|Il-12a|Ll12a|p35	interleukin 12a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-45942735-2	chr9	45942635	45942835	+	771.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_172257, exon 20 of 26)	exon (NM_172257, exon 20 of 26)	-3145.0	NR_106055	102465659.0		NR_106055	ENSMUSG00000098327	Mir7087	Gm27273|mmu-mir-7087	microRNA 7087	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-52513856-4	chr2	52513764	52513964	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037099, intron 2 of 13)	intron (NM_001037099, intron 2 of 13)	44747.0	NM_146123	12298.0	Mm.330223	NM_146123	ENSMUSG00000017412	Cacnb4	3110038O15Rik|Cchb4|lh	calcium channel, voltage-dependent, beta 4 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-77388391-3	chr8	77388281	77388481	+	734.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030113, intron 11 of 22)	intron (NM_030113, intron 11 of 22)	-128675.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-79680692-4	chr8	79680638	79680838	+	883.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31002.0	NM_015751	24015.0	Mm.5831	NM_015751	ENSMUSG00000058355	Abce1	C79080|Oabp|RLI|RNS41|RNS4I|Rnaseli	ATP-binding cassette, sub-family E (OABP), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-150831239-4	chr2	150831126	150831326	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_153781, exon 20 of 20)	3' UTR (NM_153781, exon 20 of 20)	11344.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-6175005-3	chr11	6174927	6175127	+	880.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173748, intron 2 of 5)	intron (NM_173748, intron 2 of 5)	-1696.0	NR_029471	100042173.0	Mm.441799	NR_029471		Rps15a-ps6	Gm11968	ribosomal protein S15A, pseudogene 6	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-98208480-2	chr7	98208380	98208580	+	657.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9005.0	NM_001081167	272411.0	Mm.98333	NM_001081167	ENSMUSG00000074004	B3gnt6	BC039789|Core-3|Core3	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6 (core 3 synthase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-23609901-4	chr16	23609806	23610006	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023386)	promoter-TSS (NM_023386)	-13.0	NM_023386	67775.0	Mm.475107	NM_023386	ENSMUSG00000033355	Rtp4	5830458K16Rik|Ifrg28	receptor transporter protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-70824597-2	chr9	70824497	70824697	+	819.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001324473, intron 1 of 8)	intron (NM_001324473, intron 1 of 8)	110211.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180852384-2	chr1	180852284	180852484	+	675.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_145943, intron 1 of 6)	B1_Mm|SINE|Alu	1233.0	NM_145943	208768.0	Mm.272625	NM_145943	ENSMUSG00000038806	Sde2	-	SDE2 telomere maintenance homolog (S. pombe)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-32464861-3	chr5	32464760	32464960	+	626.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172707, intron 1 of 7)	intron (NM_172707, intron 1 of 7)	5890.0	NM_172707	19046.0	Mm.241931	NM_172707	ENSMUSG00000014956	Ppp1cb	1200010B19	protein phosphatase 1, catalytic subunit, beta isoform	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-49074866-4	chr6	49074791	49074991	+	838.479187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029353, intron 1 of 3)	PB1D11|SINE|Alu	1096.0	NM_029353	75593.0	Mm.439947	NM_029353	ENSMUSG00000029815	Malsu1	2410003K15Rik|Matsu1	mitochondrial assembly of ribosomal large subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-51597446-4	chr10	51597331	51597531	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-6971.0	NM_029894	77296.0	Mm.30588	NM_029894	ENSMUSG00000019909	Fam162b	9430073N08Rik	family with sequence similarity 162, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-72944138-4	chr17	72944022	72944222	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4|LINE|L1	25817.0	NM_029999	77889.0	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-75277632-1	chr4	75277532	75277732	+	545.0	f1_c57bl6.idr	3' UTR (NM_025849, exon 2 of 2)	3' UTR (NM_025849, exon 2 of 2)	660.0	NM_025849	66928.0	Mm.24332	NM_025849	ENSMUSG00000028398	Dmac1	1700027K24Rik|3110001D03Rik|Tmem261	distal membrane arm assembly complex 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-55494260-2	chr12	55494160	55494360	+	827.099976	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-1613.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-104752789-2	chr12	104752689	104752889	+	667.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_148948)	promoter-TSS (NM_148948)	-837.0	NM_148948	192119.0	Mm.21135	NM_148948	ENSMUSG00000041415	Dicer1	1110006F08Rik|D12Ertd7e|mKIAA0928	dicer 1, ribonuclease type III	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-78266107-2	chr16	78266007	78266207	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10653.0	NR_045698	100503619.0	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-116266816-4	chr6	116266732	116266932	+	972.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290339, intron 1 of 6)	L1MC1|LINE|L1	300.0	NM_001290339	67492.0	Mm.272772	NM_001081317	ENSMUSG00000042213	Zfand4	Anubl1	zinc finger, AN1-type domain 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-68739191-4	chr7	68739105	68739305	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001042592, exon 8 of 8)	3' UTR (NM_001042592, exon 8 of 8)	10033.0	NM_001042592	66412.0	Mm.251199	NM_025549	ENSMUSG00000042659	Arrdc4	2410003C09Rik|AV216361	arrestin domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53091614-2	chr4	53091514	53091714	+	784.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 9 of 49)	MIRb|SINE|MIR	68281.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-53588619-4	chr5	53588513	53588713	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080928, intron 1 of 10)	intron (NM_001080928, intron 1 of 10)	-1733.0	NM_009035	19664.0	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-76455595-1	chr11	76455495	76455695	+	574.0	f1_balb.idr	intron (NM_001346670, intron 12 of 21)	intron (NM_001346670, intron 12 of 21)	12870.0	NM_001291186	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	0.126972056609609	-0.423447059870389	-0.427552991900346	-0.430719695312523	-0.43519303257666	-0.422521290122259	-0.426647543175355	0.209862836165343	0.266709771120564	0.922175099569496	1
Merged-chr8-25615972-3	chr8	25615884	25616084	+	660.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001735, intron 1 of 9)	B3|SINE|B2	13700.0	NM_001308482	234135.0	Mm.217337	NM_001001735	ENSMUSG00000054823	Nsd3	6720429E03|A530023P05|AI528490|WHISTLE|Whsc1l1	nuclear receptor binding SET domain protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59845383-5	chr15	59845287	59845487	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50428.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	1.21527775038797	1.26116972435722	1.33413346207262	0.7130135883346	0.700793675771145	1.27184683708249	1.34645365821506	0.896786624278974	-0.312200110928317	0.827877448541143	0.998431161219273
Merged-chr13-99211188-4	chr13	99211067	99211267	+	974.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004149, intron 1 of 4)	intron (NM_001004149, intron 1 of 4)	26344.0	NM_001004149	238803.0	Mm.343207	NM_001004149	ENSMUSG00000050919	Zfp366	DC-SCRIPT|Znf366	zinc finger protein 366	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27634807-2	chr17	27634707	27634907	+	717.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_025963, intron 1 of 5)	intron (NM_025963, intron 1 of 5)	435.0	NM_025963	67097.0	Mm.275810	NM_025963	ENSMUSG00000052146	Rps10	2210402A09Rik	ribosomal protein S10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141500770-4	chr4	141500665	141500865	+	951.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347235, intron 3 of 14)	intron (NM_001347235, intron 3 of 14)	37832.0	NM_001347235	56381.0	Mm.299906	NM_019763	ENSMUSG00000040761	Spen	Mint|mKIAA0929	spen family transcription repressor	protein-coding	2.88966942461168	0.57703627253594	1.86052115545885	1.54716059837426	0.495769933243032	0.582895723945325	0.556222228468213	0.532253560860634	-5.56894822237667	0.000295624896885061	0.00727594405888161
Merged-chr5-8082891-3	chr5	8082787	8082987	+	824.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310440, intron 29 of 30)	intron (NM_001310440, intron 29 of 30)	26345.0	NM_001080974	109552.0	Mm.96211	NM_025618	ENSMUSG00000003161	Sri	2210417O06Rik|2900070H08Rik|Sor	sorcin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-145214204-3	chr6	145214096	145214296	+	877.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163628, intron 1 of 2)	URR1A|DNA|hAT-Charlie	3049.0	NM_001362057	67636.0	Mm.486359	NM_133688	ENSMUSG00000040370	Etfrf1	4930469P12Rik|AL022899|Ghiso|Lyrm5	electron transfer flavoprotein regulatory factor 1	protein-coding	2.37619663770552	2.53069238291858	4.02144944373252	2.51250655139943	2.63273668456748	2.55020410249892	3.16207491555035	3.14806664978984	-0.300174766163695	0.683049973397002	0.995882295196263
Merged-chr11-97831981-2	chr11	97831790	97831990	+	841.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010688, intron 4 of 6)	intron (NM_010688, intron 4 of 6)	-8890.0	NM_001080935	68127.0	Mm.110270	NM_001080935	ENSMUSG00000050538	B230217C12Rik	AI840637	RIKEN cDNA B230217C12 gene	protein-coding	-1.02623923925007	-0.0785174723847883	-1.01664411116562	-1.02119558009008	-1.02548487198161	-0.999699361692546	-1.0134913975053	-1.0206685408436	-3.25251655617119	0.303463431741018	1
Merged-chr19-45085257-2	chr19	45085157	45085357	+	908.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9170.0	NM_001362397	107250.0	Mm.24417	NM_178929	ENSMUSG00000025213	Kazald1	AI842353|Bono1|IGFBP-rP10	Kazal-type serine peptidase inhibitor domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-33629771-4	chr5	33629702	33629902	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178390)	promoter-TSS (NM_178390)	-167.0	NM_001359463	74504.0	Mm.294695	NM_178390	ENSMUSG00000037339	Fam53a	2410018C17Rik|5430419M09Rik|Dntnp	family with sequence similarity 53, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-3162662-4	chr11	3162531	3162731	+	911.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030207, intron 9 of 32)	intron (NM_030207, intron 9 of 32)	30832.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-136568103-4	chr5	136567982	136568182	+	788.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009986)	promoter-TSS (NM_009986)	-592.0	NM_001291238	13047.0	Mm.320317	NM_009986	ENSMUSG00000029705	Cux1	CDP|Cutl1|Cux|Cux-1	cut-like homeobox 1	protein-coding	3.12219892660555	3.49088806846884	2.2933331352132	2.38690165141393	3.00346875123581	3.51556000240852	2.31181697613757	2.98283906576172	0.171211666525676	0.809623813796059	0.998431161219273
Merged-chr6-122740083-3	chr6	122739989	122740189	+	837.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011401, intron 2 of 9)	intron (NM_011401, intron 2 of 9)	2656.0	NM_011401	20527.0	Mm.395108	NM_011401	ENSMUSG00000003153	Slc2a3	AA408729|AL023014|AL024341|AU040424|C78366|Glut-3|Glut3	solute carrier family 2 (facilitated glucose transporter), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-62088700-2	chr18	62088600	62088800	+	554.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	91281.0	NM_007420	11555.0	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140608132-6	chr5	140608108	140608308	+	979.758301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008494, intron 1 of 7)	intron (NM_008494, intron 1 of 7)	867.0	NM_008494	16848.0	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-58487427-4	chr13	58487341	58487541	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-84098.0	NM_001301341	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-72127858-2	chr13	72127758	72127958	+	575.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-164135.0	NM_010573	16371.0	Mm.316056	NM_010573	ENSMUSG00000060969	Irx1	-	Iroquois homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-11145240-1	chr4	11145140	11145340	+	680.0	f0_balb.idr	Intergenic	Intergenic	11143.0	NR_030455	735261.0		NR_030455	ENSMUSG00000105333	Mir684-2	Mirn684-2	microRNA 684-2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59080807-2	chr15	59080707	59080907	+	716.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144800, intron 1 of 14)	intron (NM_144800, intron 1 of 14)	1219.0	NM_001146180	211401.0	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-63082336-4	chr14	63082288	63082488	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	27315.0	NR_046019	72609.0	Mm.387101	NR_046019		2700070H01Rik	-	RIKEN cDNA 2700070H01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-102685969-2	chr14	102685869	102686069	+	544.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	296663.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-23751391-4	chr5	23751260	23751460	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178403, intron 9 of 15)	intron (NM_178403, intron 9 of 15)	28303.0	NM_001289781	78697.0	Mm.58660	NM_178403	ENSMUSG00000057541	Pus7	C330017I15Rik	pseudouridylate synthase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45405907-2	chr7	45405807	45406007	+	783.375	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010596)	promoter-TSS (NM_010596)	-53.0	NM_010596	16495.0	Mm.12955	NM_010596	ENSMUSG00000038201	Kcna7	Kv1.7	potassium voltage-gated channel, shaker-related subfamily, member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116029495-4	chr11	116029394	116029594	+	955.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172569)	promoter-TSS (NM_172569)	-822.0	NM_001286006	217331.0	Mm.297706	NM_172569	ENSMUSG00000020770	Unk	B230379M23Rik|Unkh|Zc3h5|Zc3hdc5|mKIAA1753	unkempt family zinc finger	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133498013-2	chr4	133497913	133498113	+	865.833374	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081156, exon 1 of 2)	exon (NM_001081156, exon 1 of 2)	537.0	NM_001081156	69539.0	Mm.151594	NM_001081156	ENSMUSG00000056596	Trnp1	2300002D11Rik|Trnp	TMF1-regulated nuclear protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135968223-2	chr5	135968150	135968350	+	644.666626	f1_balb.idr|f1_c57bl6.idr	exon (NM_001160366, exon 3 of 11)	exon (NM_001160366, exon 3 of 11)	6226.0	NM_001160366	109267.0	Mm.332750	NM_001160366	ENSMUSG00000029699	Ssc4d	C330016E03Rik|S4D-SRCRB|SRCRB-S4D|Srcrb4d	scavenger receptor cysteine rich family, 4 domains	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-119072379-2	chr12	119072279	119072479	+	622.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4_|SINE|ID	-105958.0	NM_029961	77706.0	Mm.261496	NM_029961	ENSMUSG00000072791	Abcb5	9230106F14Rik	ATP-binding cassette, sub-family B (MDR/TAP), member 5	protein-coding	-1.18832717429738	-1.16380929885254	-0.856565824811958	-1.18328408639367	-1.18787580914644	-1.16149229066421	-0.849604865165746	-1.18171197755832	0.0406512889656815	0.990321405100139	1
Merged-chr10-12940772-1	chr10	12940672	12940872	+	886.0	f0_balb.idr	3' UTR (NM_029075, exon 3 of 3)	3' UTR (NM_029075, exon 3 of 3)	-17645.0	NR_038028	320273.0	Mm.417706	NR_038027	ENSMUSG00000097378	B230208H11Rik	-	RIKEN cDNA B230208H11 gene	ncRNA	2.33109249542796	2.99228389596082	2.03440538262756	2.80748486218421	2.35152313045456	3.818806108649	2.91325817939465	2.71791966732248	0.874624901113432	0.240489095438371	0.736569477638593
Merged-chr3-60538728-4	chr3	60538622	60538822	+	966.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310514, intron 2 of 8)	intron (NM_001310514, intron 2 of 8)	37543.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	3.75254724552731	4.18091431965556	4.10226129919832	3.43035304002709	3.55655517640843	1.8056871499354	3.5578744785347	2.84290723230454	-1.1648807337153	0.0574097488009203	0.354687006237612
Merged-chr14-31685762-4	chr14	31685631	31685831	+	844.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER44B|DNA|TcMar-Tigger	44674.0	NM_025295	26363.0	Mm.282679	NM_025295	ENSMUSG00000021900	Btd	-	biotinidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-86470704-4	chr1	86470617	86470817	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44388.0	NM_027966	71863.0	Mm.179627	NM_027966	ENSMUSG00000036574	Tex44	1700019O17Rik	testis expressed 44	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-27929490-4	chr7	27929383	27929583	+	960.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028538)	promoter-TSS (NM_028538)	-53.0	NM_028538	73430.0	Mm.379224	NM_028538	ENSMUSG00000070709	Zfp974	1700049G17Rik|AV321011|BB026409	zinc finger protein 974	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-120831311-4	chr7	120831209	120831409	+	939.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-11522.0	NM_007908	13631.0	Mm.25997	NM_007908	ENSMUSG00000035064	Eef2k	C86191|eEF-2K	eukaryotic elongation factor-2 kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-15972984-2	chr7	15972884	15973084	+	975.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081418, intron 13 of 13)	intron (NM_001081418, intron 13 of 13)	-5449.0	NM_153068	259300.0	Mm.138215	NM_153068	ENSMUSG00000074364	Ehd2	BC027084|C130052H20Rik	EH-domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-86513199-2	chr1	86513099	86513299	+	556.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13358.0	NR_153834	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-112216123-4	chr2	112216014	112216214	+	910.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23727.0	NM_207206	99010.0	Mm.33438	NM_207206	ENSMUSG00000027134	Lpcat4	AI505034|Agpat7|Aytl3|LPEAT2	lysophosphatidylcholine acyltransferase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-61513585-3	chr9	61513418	61513618	+	958.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M3|LINE|L1	141152.0	NM_001083927	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-35086782-4	chr7	35086671	35086871	+	996.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30205.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-107901008-1	chr5	107900908	107901108	+	1000.0	f1_balb.idr	intron (NM_016980, intron 1 of 7)	intron (NM_016980, intron 1 of 7)	480.0	NM_016980	100503670.0	Mm.277897	NM_016980	ENSMUSG00000058558	Rpl5	U21RNA	ribosomal protein L5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-155202050-2	chr4	155201950	155202150	+	624.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011385, intron 1 of 6)	intron (NM_011385, intron 1 of 6)	20485.0	NM_011385	20481.0	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-3961590-4	chr2	3961486	3961686	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA4|LINE|L1	-56097.0	NM_001347086	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133240713-2	chr4	133240625	133240825	+	889.400024	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016693)	promoter-TSS (NM_016693)	-93.0	NM_016693	53608.0	Mm.36640	NM_016693	ENSMUSG00000028862	Map3k6	Ask2|MAPKKK6|MEKK6	mitogen-activated protein kinase kinase kinase 6	protein-coding	2.47499366945765	1.04652792397395	1.97571697971436	2.74411990413254	1.38688464059153	2.19912020882287	1.02393564247169	0.998098479641241	-1.79172101542608	0.136541936159343	0.576706225078548
Merged-chr18-60802053-3	chr18	60801949	60802149	+	809.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR30|LTR|ERV1	-1800.0	NM_001042605	16149.0	Mm.439737	NM_010545	ENSMUSG00000024610	Cd74	CLIP|DHLAG|HLADG|Ia-GAMMA|Ii	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	protein-coding	1.98624190539419	2.87365211311944	3.09584972959547	1.2596328854388	2.26271839402937	3.42847083167839	2.02228421163212	1.53983402278021	0.0532945884675725	0.955998776962014	0.998431161219273
Merged-chr12-100529420-4	chr12	100529313	100529513	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8591.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-106475118-2	chr9	106475025	106475225	+	646.833374	f1_balb.idr|f1_c57bl6.idr	exon (NM_001311150, exon 3 of 11)	exon (NM_001311150, exon 3 of 11)	1824.0	NM_001311150	235587.0	Mm.273659	NM_145619	ENSMUSG00000023249	Parp3	A930002C11Rik|AW990611|Adprt3|Adprtl3|PARP-3|pADPRT-3	poly (ADP-ribose) polymerase family, member 3	protein-coding	0.505362080247397	0.869610475042312	0.819253217781621	0.246418956273411	0.721775094059647	0.25936261734225	0.252851348105448	0.247293111163906	-1.60486397573692	0.409340077134879	1
Merged-chr1-13332786-4	chr1	13332688	13332888	+	928.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008678, intron 1 of 22)	L1M4|LINE|L1	39641.0	NM_001302702	17978.0	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166537087-3	chr2	166536979	166537179	+	871.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27443.0	NR_152154	433503.0	Mm.491336	NR_152154		Gm29679	-	predicted gene, 29679	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-22015868-4	chr13	22015756	22015956	+	921.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	tRNA-Val-GTY|tRNA|tRNA	-6115.0	NM_019429	54373.0	Mm.32043	NM_019429	ENSMUSG00000006179	Prss16	AI448615|TSSP	protease, serine 16 (thymus)	protein-coding	-1.50724948101374	-1.47510698153695	-1.33188469178541	-1.49281156516806	-1.35294783104825	-1.32005813604002	-1.48262670816313	-1.49138235664428	0.714836879489513	0.823510408683332	1
Merged-chr17-34040286-2	chr17	34040060	34040260	+	784.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_009926, intron 1 of 63)	intron (NM_009926, intron 1 of 63)	1022.0	NM_001317722	12815.0	Mm.20230	NM_009926	ENSMUSG00000024330	Col11a2	-	collagen, type XI, alpha 2	protein-coding	0.878339413372894	0.333084750440398	0.326112228075898	0.750534346043546	0.313101214830076	0.961250291188129	0.32765095663088	0.756607779640502	0.148490848881436	0.937326650210483	1
Merged-chr12-55443333-4	chr12	55443215	55443415	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44490.0	NM_011968	26443.0	Mm.30210	NM_011968	ENSMUSG00000021024	Psma6	IOTA	proteasome (prosome, macropain) subunit, alpha type 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-30211000-4	chr6	30210903	30211103	+	868.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001169577)	TTS (NM_001169577)	32800.0	NM_001169577	22214.0	Mm.332967	NM_009459	ENSMUSG00000039159	Ube2h	1500009C23Rik|AI181839|AI326965|AI462483|AW227540|E2-20K|Gid3|N28148|Ubc8	ubiquitin-conjugating enzyme E2H	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-52190871-1	chr14	52190771	52190971	+	698.0	f0_balb.idr	intron (NM_033618, intron 1 of 25)	B3|SINE|B2	6368.0	NM_033618	114741.0	Mm.21662	NM_033618	ENSMUSG00000035726	Supt16	Cdc68|Fact140|Spt16|Supt16h	suppressor of Ty 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43454254-4	chr4	43454157	43454357	+	875.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007654, exon 2 of 9)	exon (NM_007654, exon 2 of 9)	369.0	NM_001110320	12517.0	Mm.188157	NM_007654	ENSMUSG00000028459	Cd72	CD72c|Ly-19|Ly-32|Ly-m19|Lyb-2	CD72 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44379387-4	chr9	44379277	44379477	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021395)	promoter-TSS (NM_021395)	-113.0	NM_021395	12282.0	Mm.116721	NM_021395	ENSMUSG00000032115	Hyou1	AI415631|CBP-140|Cab140|Grp170|Orp150	hypoxia up-regulated 1	protein-coding	0.366588008799752	0.407494685009823	1.23550502607783	1.18228529813979	0.369239901405372	0.410392948322232	1.71191377127602	0.385963723153359	0.112010666974553	0.972210281080543	0.998431161219273
Merged-chr11-32644240-4	chr11	32644141	32644341	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271349, intron 1 of 11)	intron (NM_001271349, intron 1 of 11)	1686.0	NM_001271347	103583.0	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-17544775-4	chr12	17544657	17544857	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013614)	promoter-TSS (NM_013614)	-116.0	NM_013614	18263.0	Mm.34102	NM_013614	ENSMUSG00000011179	Odc1	ODC	ornithine decarboxylase, structural 1	protein-coding	5.64308997880534	5.63382999572788	5.34771181460775	5.88756290758017	5.88129579103066	6.09909824076937	5.53727499842879	5.95059077834195	0.265262096130232	0.297680245080898	0.800257675359925
Merged-chr2-128122557-3	chr2	128122433	128122633	+	743.955566	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028765, intron 17 of 17)	intron (NM_028765, intron 17 of 17)	-3505.0	NM_207681	12125.0	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-17755202-2	chr14	17755102	17755302	+	705.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113417, intron 1 of 9)	intron (NM_001113417, intron 1 of 9)	94242.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-32812622-4	chr14	32812525	32812725	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163616, intron 4 of 4)	intron (NM_001163616, intron 4 of 4)	-21337.0	NM_001164485	105511.0	Mm.32231	NM_001164485	ENSMUSG00000078127	Fam170b	4922501K12Rik|AI449756	family with sequence similarity 170, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-23860528-2	chr19	23860428	23860628	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177034, intron 1 of 12)	intron (NM_177034, intron 1 of 12)	101652.0	NM_177034	319924.0	Mm.22879	NM_177034	ENSMUSG00000024897	Apba1	6430513E09Rik|Lin-10|Mint|Mint1|Urop11|X11|X11alpha	amyloid beta (A4) precursor protein binding, family A, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-78328391-4	chr11	78328287	78328487	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_201406)	promoter-TSS (NM_201406)	-35.0	NM_201406	276846.0	Mm.295908	NM_201406	ENSMUSG00000041958	Pigs	BC058979|Gm393|Gm689	phosphatidylinositol glycan anchor biosynthesis, class S	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-190910059-4	chr1	190909950	190910150	+	923.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178775, intron 1 of 14)	intron (NM_178775, intron 1 of 14)	1720.0	NM_178775	320119.0	Mm.220912	NM_178775	ENSMUSG00000089872	Rps6kc1	AA682037|B130003F20Rik|C80612|Rpk118	ribosomal protein S6 kinase polypeptide 1	protein-coding	2.16527145844763	2.5270533303598	1.61439375279275	1.38848297568972	2.00433827441745	2.25576736590225	1.6260646517056	1.39416744478123	-0.387600908128174	0.704860542933098	0.998431161219273
Merged-chr11-61760730-4	chr11	61760671	61760871	+	795.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144806, intron 1 of 11)	B3|SINE|B2	1317.0	NM_144806	212627.0	Mm.27703	NM_144806	ENSMUSG00000020528	Prpsap2	A230054F23Rik	phosphoribosyl pyrophosphate synthetase-associated protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-95346501-2	chr11	95346401	95346601	+	963.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172543, intron 1 of 7)	intron (NM_172543, intron 1 of 7)	9483.0	NM_172543	215512.0	Mm.262113	NM_172543	ENSMUSG00000038893	Fam117a	5730593F17Rik|AW548096	family with sequence similarity 117, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-66296972-4	chr14	66296897	66297097	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029979)	promoter-TSS (NM_029979)	-28.0	NM_029979	66854.0	Mm.43871	NM_029979	ENSMUSG00000022043	Trim35	0710005M05Rik|A430106H13Rik|AW046487|HLS5|Mair|NC8|mKIAA1098	tripartite motif-containing 35	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-4201472-3	chr8	4201371	4201571	+	900.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346730, intron 11 of 19)	intron (NM_001346730, intron 11 of 19)	15841.0	NM_207203	73072.0	Mm.477379	NM_207203	ENSMUSG00000064125	Prr36	-	proline rich 36	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-91095523-4	chr1	91095421	91095621	+	860.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008515, intron 10 of 22)	intron (NM_008515, intron 10 of 22)	42077.0	NM_001310732	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-58440566-4	chr4	58440479	58440679	+	808.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_037278)	TTS (NR_037278)	519.0	NR_037278	100526502.0		NR_037278	ENSMUSG00000093293	Mir3095	mir-3095|mmu-mir-3095	microRNA 3095	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-109495811-2	chr11	109495711	109495911	+	900.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361977, intron 1 of 10)	intron (NM_001361977, intron 1 of 10)	472.0	NM_001361977	74008.0	Mm.482224	NM_028710	ENSMUSG00000020604	Arsg	6330406P08Rik|AI846872|ASG	arylsulfatase G	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-26686842-2	chr8	26686742	26686942	+	601.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	137581.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-31060747-6	chr3	31060675	31060875	+	958.888916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21809.0	NR_105975	102465610.0		NR_105975	ENSMUSG00000098890	Mir7008	Gm27752|mmu-mir-7008	microRNA 7008	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19203165-4	chr7	19203060	19203260	+	969.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347582, intron 20 of 21)	intron (NM_001347582, intron 20 of 21)	-9378.0	NM_175668	319197.0	Mm.135984	NM_175668	ENSMUSG00000044317	Gpr4	-	G protein-coupled receptor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118489808-4	chr9	118489658	118489858	+	959.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11569.0	NM_010136	13813.0	Mm.200692	NM_010136	ENSMUSG00000032446	Eomes	C77258|TBR-2|Tbr2	eomesodermin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-30872227-3	chr1	30872088	30872288	+	844.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8932.0	NM_001081080	213109.0	Mm.194486	NM_025871	ENSMUSG00000048874	Phf3	2310061N19Rik	PHD finger protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-136051678-3	chr1	136051588	136051788	+	757.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001270609)	TTS (NM_001270609)	884.0	NM_001270609	226439.0	Mm.491831	NM_001270609	ENSMUSG00000097918	Ascl5	Ascl5-ps|Gm197|bHLHa47	achaete-scute family bHLH transcription factor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25771224-3	chr7	25771123	25771323	+	666.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001190974, intron 9 of 18)	intron (NM_001190974, intron 9 of 18)	-16464.0	NM_178089	232989.0	Mm.254223	NM_144922	ENSMUSG00000040725	Hnrnpul1	E130317O14Rik|E1B-AP5|E1BAP5|Hnrnpul|Hnrpul1	heterogeneous nuclear ribonucleoprotein U-like 1	protein-coding	1.20923469837988	0.726511937982557	0.907896291465499	1.47974981671183	1.22063345343259	0.728941824709796	0.913907482087367	1.48896436802969	0.0344377200946811	0.980911943675748	0.998431161219273
Merged-chr13-45625954-3	chr13	45625846	45626046	+	966.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199304, intron 5 of 6)	MIRb|SINE|MIR	118502.0	NM_025508	66355.0	Mm.290802	NM_025508	ENSMUSG00000000253	Gmpr	2310004P21Rik|AV028449|GMPR 1	guanosine monophosphate reductase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26210643-2	chr17	26210543	26210743	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081069, exon 17 of 17)	exon (NM_001081069, exon 17 of 17)	7702.0	NM_001081069	50782.0	Mm.109840	NM_001081069	ENSMUSG00000024186	Rgs11	C78048	regulator of G-protein signaling 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-133637610-4	chr7	133637515	133637715	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178115)	promoter-TSS (NM_178115)	-60.0	NM_178115	214764.0	Mm.174044	NM_145995	ENSMUSG00000039990	Edrf1	2700050L05Rik|AU022667|AW558805	erythroid differentiation regulatory factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-61593623-4	chr2	61593508	61593708	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149324, intron 1 of 9)	intron (NR_149324, intron 1 of 9)	511.0	NR_149323	21353.0	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-99113673-2	chr9	99113573	99113773	+	630.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029094, intron 2 of 23)	intron (NM_029094, intron 2 of 23)	26538.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55772333-2	chr14	55772233	55772433	+	705.333313	f1_balb.idr|f1_c57bl6.idr	exon (NM_001361604, exon 19 of 26)	exon (NM_001361604, exon 19 of 26)	6371.0	NM_008519	16995.0	Mm.20853	NM_008519	ENSMUSG00000046908	Ltb4r1	BLT1|BLTR|Ltb4r|mBLTR	leukotriene B4 receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-128739722-4	chr7	128739631	128739831	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145955, intron 1 of 15)	intron (NM_145955, intron 1 of 15)	698.0	NM_145955	210711.0	Mm.58882	NM_145955	ENSMUSG00000048170	Mcmbp	1110007A13Rik|AU017382|BC025641|MCM-BP	minichromosome maintenance complex binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-93582667-2	chr13	93582567	93582767	+	622.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	55091.0	NM_016668	12116.0	Mm.329582	NM_016668	ENSMUSG00000074768	Bhmt	-	betaine-homocysteine methyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-81029453-2	chr13	81029353	81029553	+	755.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_015587, intron 1 of 1)	intron (NR_015587, intron 1 of 1)	65379.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-9565195-2	chr15	9565095	9565295	+	559.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-35319.0	NM_008372	16197.0	Mm.389	NM_008372	ENSMUSG00000003882	Il7r	CD127|IL-7Ralpha	interleukin 7 receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-89463295-3	chr1	89463211	89463411	+	748.861084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037136, intron 1 of 16)	intron (NM_001037136, intron 1 of 16)	8500.0	NM_001037136	347722.0	Mm.291135	NM_178119	ENSMUSG00000055013	Agap1	Centg2|Ggap1|R75364|mKIAA1099	ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111430621-4	chr12	111430526	111430726	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289487, intron 13 of 13)	intron (NM_001289487, intron 13 of 13)	-12035.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-24842784-4	chr5	24842685	24842885	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053075)	promoter-TSS (NM_053075)	-424.0	NM_053075	19744.0	Mm.319175	NM_053075	ENSMUSG00000028945	Rheb	Rheb1	Ras homolog enriched in brain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-8771028-4	chr19	8770944	8771144	+	897.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025791)	promoter-TSS (NM_025791)	48.0	NM_025791	66836.0	Mm.440071	NM_025791	ENSMUSG00000010097	Tmem223	0610006I08Rik	transmembrane protein 223	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-69044434-2	chr3	69044334	69044534	+	904.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025863, intron 1 of 2)	CpG	308.0	NM_025863	66949.0	Mm.176695	NM_025863	ENSMUSG00000034317	Trim59	2310035M22Rik|2700022F13Rik|Mrf1|TSBF1	tripartite motif-containing 59	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-4530923-2	chr11	4530823	4531023	+	550.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028860, intron 2 of 17)	tRNA-Ala-GCA|tRNA|tRNA	63892.0	NM_028860	74302.0	Mm.425669	NM_028860	ENSMUSG00000034354	Mtmr3	1700092A20Rik|AI255150|AW557713|FYVE-DSP1|ZFYVE10|mKIAA0371	myotubularin related protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5569603-2	chr19	5569503	5569703	+	675.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_001033448, exon 2 of 2)	exon (NM_001033448, exon 2 of 2)	1579.0	NM_001033448	381201.0	Mm.441906	NM_001033448	ENSMUSG00000049562	Ap5b1	Gm962|beta-5	adaptor-related protein complex 5, beta 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70077940-3	chr14	70077874	70078074	+	878.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289927, intron 1 of 1)	CpG	179.0	NM_001289927	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129788901-4	chr4	129788811	129789011	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31568.0	NM_008974	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-148709638-3	chr4	148709532	148709732	+	620.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	66315.0	NM_001085505	230909.0	Mm.332067	NM_001085505	ENSMUSG00000070577	Gm572	b2b1167Clo	predicted gene 572	protein-coding	0.0591381489024841	0.0786843351084695	0.0723092950290765	0.624114655864501	0.462285730933483	0.0801177617406791	0.0737176439350996	0.906160618308378	1.27736175801016	0.556052294798272	1
Merged-chr4-142044834-2	chr4	142044734	142044934	+	768.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145402, intron 1 of 2)	intron (NM_145402, intron 1 of 2)	26936.0	NR_131014	78917.0	Mm.139995	NR_131014	ENSMUSG00000085761	4930455G09Rik	-	RIKEN cDNA 4930455G09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-148491338-4	chr2	148491257	148491457	+	946.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47822.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-46375156-4	chr4	46375056	46375256	+	911.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14267.0	NM_029086	74753.0	Mm.45973	NM_029086	ENSMUSG00000028331	Trmo	5830415F09Rik|AV014846|Nap1	tRNA methyltransferase O	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-76945638-4	chr11	76945490	76945690	+	976.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178645)	promoter-TSS (NM_178645)	-66.0	NM_178645	104184.0	Mm.399785	NM_178645	ENSMUSG00000020840	Blmh	AI035728|Bh|Bmh	bleomycin hydrolase	protein-coding	2.11312392412273	2.23725509273892	2.29756151836839	1.94614392335474	1.2687436952143	3.08876152737709	2.31614130050987	2.89385520976444	0.902911434635691	0.32415357941816	0.826667417994705
Merged-chr9-55534934-2	chr9	55534834	55535034	+	555.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6215.0	NM_027397	104360.0	Mm.273996	NM_027397	ENSMUSG00000032318	Isl2	3110001N10Rik	insulin related protein 2 (islet 2)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-73377142-2	chr14	73377042	73377242	+	556.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008410, intron 1 of 5)	intron (NM_008410, intron 1 of 5)	8147.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-33202821-2	chr14	33202721	33202921	+	744.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-14002.0	NM_153800	239027.0	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-59482032-4	chr1	59481933	59482133	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008057)	promoter-TSS (NM_008057)	-114.0	NM_008057	14369.0	Mm.297906	NM_008057	ENSMUSG00000041075	Fzd7	Fz7	frizzled class receptor 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-77830897-4	chr15	77830803	77831003	+	849.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022410, intron 1 of 40)	intron (NM_022410, intron 1 of 40)	11272.0	NM_022410	17886.0	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-111002210-2	chr4	111002110	111002310	+	845.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001284190, intron 4 of 12)	intron (NM_001284190, intron 4 of 12)	-412796.0	NR_033793	67621.0	Mm.45533	NM_026279	ENSMUSG00000028545	Bend5	2310026E23Rik	BEN domain containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-100409276-3	chr13	100409135	100409335	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008670, intron 15 of 15)	intron (NM_008670, intron 15 of 15)	43629.0	NM_008670	17940.0	Mm.6898	NM_008670	ENSMUSG00000021640	Naip1	AV364616|Birc1a|D13Lsd1|Naip|Naip-rs1	NLR family, apoptosis inhibitory protein 1	protein-coding	1.44545618020936	0.984695345266528	0.961697971551068	0.943353098531954	1.99477695862604	2.44468473142887	1.86944751555931	1.9162494263453	3.46565101949601	0.00766314088322878	0.0902575565938928
Merged-chr5-121595344-2	chr5	121595244	121595444	+	718.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1520.0	NM_001308450	11669.0	Mm.284446	NM_009656	ENSMUSG00000029455	Aldh2	AHD-M1|ALDH-E2|ALDHI|Ahd-5|Ahd5	aldehyde dehydrogenase 2, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-49422260-4	chr17	49422167	49422367	+	879.0166630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER21B|LTR|ERV1	-6097.0	NM_028464	56738.0	Mm.22256	NM_020042	ENSMUSG00000064120	Mocs1	3110045D15Rik|AI043170|AW536397	molybdenum cofactor synthesis 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-124642375-4	chr2	124642274	124642474	+	973.087524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291000, intron 1 of 18)	intron (NM_001291000, intron 1 of 18)	-11207.0	NM_199240	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-53591229-4	chr5	53591169	53591369	+	872.9208369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359152, intron 1 of 9)	intron (NM_001359152, intron 1 of 9)	783.0	NM_001080927	19664.0	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-36058499-1	chr17	36058399	36058599	+	820.75	f0_balb.idr	promoter-TSS (NM_001199967)	promoter-TSS (NM_001199967)	-128.0	NM_001199967	100529082.0	Mm.484641	NM_001199967	ENSMUSG00000079492	Gm11127	-	predicted gene 11127	protein-coding	1.58661413931632	2.2751826338774	2.7793838449975	2.11899144353609	2.9438812235875	4.19323403617377	3.35987612740081	2.58877023456561	2.07731664555145	0.00638476469677276	0.0798517096927167
Merged-chr6-108466243-4	chr6	108466141	108466341	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 44 of 61)	intron (NM_010585, intron 44 of 61)	-23502.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	2.86442161127838	2.51198386170162	1.57877235330065	3.17489626267724	2.96682863543036	3.04229848101848	2.9414929312951	3.39283065670043	0.781666425646228	0.289427155352248	0.794962737980023
Merged-chr2-152398914-4	chr2	152398816	152399016	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011438)	promoter-TSS (NM_011438)	-870.0	NM_011438	20667.0	Mm.28424	NM_011438	ENSMUSG00000051817	Sox12	2010205A02Rik	SRY (sex determining region Y)-box 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-152757231-4	chr2	152757150	152757350	+	909.8250119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053091, intron 3 of 4)	intron (NM_053091, intron 3 of 4)	3077.0	NM_053091	84682.0	Mm.196668	NM_053091	ENSMUSG00000009876	Cox4i2	Cox4b|CoxIV-2	cytochrome c oxidase subunit 4I2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111744227-4	chr12	111744122	111744322	+	983.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163388, intron 4 of 5)	intron (NM_001163388, intron 4 of 5)	-14627.0	NM_001361612	16593.0	Mm.278357	NM_008450	ENSMUSG00000021288	Klc1	AI874768|Kns2	kinesin light chain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-10412125-4	chr16	10412041	10412241	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011955, exon 2 of 11)	exon (NM_011955, exon 2 of 11)	203.0	NM_011955	26425.0	Mm.29037	NM_011955	ENSMUSG00000022503	Nubp1	-	nucleotide binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3797901-2	chr4	3797801	3798001	+	847.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37754.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3853670-2	chr19	3853570	3853770	+	584.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271496, intron 1 of 11)	intron (NM_001271496, intron 1 of 11)	1897.0	NR_073190	12660.0	Mm.225505	NM_013490	ENSMUSG00000024843	Chka	CK|CK/EK-alpha|Chetk-alpha|Chk|ChoK|EK|EtnK-alpha	choline kinase alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-23877865-2	chr18	23877765	23877965	+	711.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162941, intron 5 of 7)	intron (NM_001162941, intron 5 of 7)	73895.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-75132686-2	chr8	75132602	75132802	+	662.416626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23193.0	NM_008566	17218.0	Mm.5048	NM_008566	ENSMUSG00000005410	Mcm5	AA617332|AI324988|AL033333|Cdc46|Mcmd5|P1-CDC46	minichromosome maintenance complex component 5	protein-coding	3.28431933748165	2.9889479491576	3.00584864529616	4.07061691458681	2.67040659053842	3.54104194168155	2.77238104070456	3.90113932182209	-0.157479711266954	0.802859809089944	0.998431161219273
Merged-chr18-67563124-2	chr18	67563024	67563224	+	667.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-10403.0	NM_194355	68166.0	Mm.208723	NM_176832	ENSMUSG00000024533	Spire1	6030430B19Rik|AI415299|AU022898|AW550622|Spir-1	spire type actin nucleation factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-88987709-1	chr11	88987609	88987809	+	602.0	f1_c57bl6.idr	intron (NM_016706, intron 5 of 6)	intron (NM_016706, intron 5 of 6)	-11694.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	1.71267608032621	3.48480935475467	3.55491815638728	2.26659197590276	0.809801273285939	0.960626441510775	0.915388074190818	0.874071782271153	-6.29607159817979	1.12535444945009e-06	7.05679582813705e-05
Merged-chr13-109348288-1	chr13	109348188	109348388	+	774.0	f0_balb.idr	intron (NM_011056, intron 3 of 16)	intron (NM_011056, intron 3 of 16)	23544.0	NR_030644	100124489.0		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA	1.819201942046	1.44428456768582	1.24257626482016	1.0430574896999	1.40488490671428	0.875483248033117	1.84922120126506	0.848029947903597	-0.348683704768173	0.793608332567922	0.998431161219273
Merged-chr11-75465161-2	chr11	75465061	75465261	+	721.833313	f1_balb.idr|f1_c57bl6.idr	intron (NR_030711, intron 2 of 2)	intron (NR_030711, intron 2 of 2)	1445.0	NR_029739	387141.0		NR_029739	ENSMUSG00000065529	Mir22	Mirn22|mmu-mir-22	microRNA 22	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-50868485-2	chr15	50868385	50868585	+	721.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_032000, intron 1 of 5)	intron (NM_032000, intron 1 of 5)	20564.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	-2.18138529563533	-2.15523716995652	-2.1631445789866	-2.16963996020037	-2.05513010215571	-2.15352360143315	-2.16135451490766	-2.16847729006863	0.759018020146679	0.829933115115583	1
Merged-chr2-113305566-4	chr2	113305462	113305662	+	880.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	19830.0	NM_029232	75275.0	Mm.159484	NM_029232	ENSMUSG00000041255	Tmco5b	4930563P21Rik	transmembrane and coiled-coil domains 5B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6087823-2	chr19	6087723	6087923	+	599.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026410, intron 4 of 5)	B1_Mur3|SINE|Alu	2726.0	NM_026410	67849.0	Mm.23526	NM_026410	ENSMUSG00000024791	Cdca5	2610036L13Rik|AL024086|AW536684|C85404	cell division cycle associated 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-30961060-1	chr5	30960960	30961160	+	1000.0	f0_c57.idr	promoter-TSS (NM_016703)	promoter-TSS (NM_016703)	-733.0	NM_016703	50907.0	Mm.272414	NM_016703	ENSMUSG00000045302	Preb	C85705	prolactin regulatory element binding	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-37223169-4	chr6	37223062	37223262	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347104, intron 1 of 32)	intron (NM_001347104, intron 1 of 32)	76814.0	NM_001081206	320127.0	Mm.119469	NM_001081206	ENSMUSG00000038665	Dgki	6430604M11Rik|C130010K08Rik	diacylglycerol kinase, iota	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-136052542-3	chr4	136052475	136052675	+	725.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_154592).3	promoter-TSS (NR_154592).3	796.0	NM_025919	67025.0	Mm.276856	NM_025919	ENSMUSG00000059291	Rpl11	2010203J19Rik	ribosomal protein L11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-57485231-1	chr8	57485131	57485331	+	613.0	f0_balb.idr	intron (NM_021788, intron 2 of 3)	intron (NM_021788, intron 2 of 3)	2629.0	NM_021788	60406.0	Mm.118	NM_021788	ENSMUSG00000031609	Sap30	30kDa	sin3 associated polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-94511595-1	chr9	94511495	94511695	+	550.0	f1_balb.idr	Intergenic	Lx5|LINE|L1	26486.0	NM_001033145	68861.0	Mm.258746	NM_001033145	ENSMUSG00000045414	1190002N15Rik	GoPro49|HASF	RIKEN cDNA 1190002N15 gene	protein-coding	-0.731792666392433	-0.971318279732643	-0.982252271183734	-0.825954561510065	-0.986914888095788	-0.629711364123936	-0.980146746858609	-0.983851582675293	-0.220160285872077	0.941158294807384	1
Merged-chr1-173447336-2	chr1	173447234	173447434	+	959.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013779, intron 2 of 8)	L1MC1|LINE|L1	26730.0	NM_001013779	383619.0	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	-0.706572945944229	-0.697757353784183	-0.700662527422668	-0.302477697116138	-0.347143746925649	-0.697100225078963	-0.70002318316349	-0.546201851952893	0.280154893675867	0.919837263607475	1
Merged-chr13-99955742-3	chr13	99955603	99955803	+	622.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030026, intron 13 of 16)	intron (NM_030026, intron 13 of 16)	-55020.0	NM_001081493	27220.0	Mm.75498	NM_013732	ENSMUSG00000021647	Cartpt	Cart	CART prepropeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-67478716-4	chr18	67478606	67478806	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144867, intron 6 of 6)	intron (NM_144867, intron 6 of 6)	13857.0	NM_144867	225655.0	Mm.221420	NM_144867	ENSMUSG00000024530	Prelid3a	A230074A19Rik|BC019561|Slmo1	PRELI domain containing 3A	protein-coding	4.51952156444975	4.84696646084678	3.53462283838654	4.50970241783684	3.59551827415196	3.47927727792455	3.46405717562273	4.10115520261097	-1.00636726229177	0.0335660011752249	0.257387014550713
Merged-chr11-3140039-2	chr11	3139952	3140152	+	1000.0	f0_balb.idr|f1_balb.idr	intron (NM_030207, intron 22 of 32)	intron (NM_030207, intron 22 of 32)	16031.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-94989849-4	chr11	94989746	94989946	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1366.0	NM_172261	217124.0	Mm.229087	NM_172261	ENSMUSG00000038976	Ppp1r9b	SPL|Spn	protein phosphatase 1, regulatory subunit 9B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-160906849-1	chr1	160906749	160906949	+	1000.0	f0_c57.idr	intron (NM_001024952, intron 1 of 19)	CpG	438.0	NM_001024952	381305.0	Mm.329667	NM_001024952	ENSMUSG00000040423	Rc3h1	5730557L09Rik|Gm551|N28103|mKIAA2025	RING CCCH (C3H) domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-64369051-6	chr13	64368850	64369050	+	935.0277710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009984, intron 2 of 7)	intron (NM_009984, intron 2 of 7)	1570.0	NM_009984	13039.0	Mm.930	NM_009984	ENSMUSG00000021477	Ctsl	1190035F06Rik|CatL|Ctsl1|MEP|fs|nkt	cathepsin L	protein-coding	3.37392757503203	2.38550173997188	1.88762341131855	3.22403157867608	3.28534213491529	2.98169736976729	2.76460430579822	3.38008024963635	0.448164722142034	0.529117439732552	0.949464880269839
Merged-chr2-17896211-4	chr2	17896117	17896317	+	969.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J2|LTR|ERVL-MaLR	100741.0	NM_026627	68231.0	Mm.23887	NM_026627	ENSMUSG00000062651	H2al2a	1700113O17Rik|H2A.Bbd|H2A.L.2|H2afb1|H2al2|TSEG-1|Tseg1	H2A histone family member L2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-59784675-2	chr12	59784575	59784775	+	556.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER21C|LTR|ERVL	-565192.0	NM_001033156	70611.0	Mm.311026	NM_001033156	ENSMUSG00000035329	Fbxo33	5730501N20Rik|AI642135	F-box protein 33	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-64692972-2	chr8	64692859	64693059	+	572.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_013494, exon 1 of 9)	5' UTR (NM_013494, exon 1 of 9)	150.0	NM_013494	12876.0	Mm.31395	NM_013494	ENSMUSG00000037852	Cpe	CPH|Cph-1|Cph1|NF-alpha1|R74677|fat	carboxypeptidase E	protein-coding	-0.0185537316836216	0.00875963682753902	-2.38218885438291e-05	-0.00690749879546915	1.08276558226663	0.993643397387273	0.00192662959707685	-0.00569799906180246	4.41799038023439	0.0424113510648076	1
Merged-chr2-117378473-4	chr2	117378378	117378578	+	997.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-35601.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	2.52727599153245	2.61374497232687	2.14083105308262	2.22503120273711	2.95559515772434	2.51037427960533	2.15539587909757	2.67001107653307	0.498675866744317	0.521772877816825	0.947836760490745
Merged-chr2-157071760-3	chr2	157071669	157071869	+	986.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164663, intron 1 of 14)	intron (NM_001164663, intron 1 of 14)	7496.0	NM_001164663	320706.0	Mm.79466	NM_001164663	ENSMUSG00000055485	Soga1	9830001H06Rik|AI426038|D430036N24Rik|Soga	suppressor of glucose, autophagy associated 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-86184315-4	chr15	86184253	86184453	+	854.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145475, intron 1 of 12)	intron (NM_145475, intron 1 of 12)	-1375.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-134286367-4	chr4	134286301	134286501	+	920.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146156, intron 1 of 2)	intron (NM_146156, intron 1 of 2)	852.0	NM_001163794	230809.0	Mm.22778	NM_146156	ENSMUSG00000050890	Pdik1l	BC027088|stk35l2	PDLIM1 interacting kinase 1 like	protein-coding	1.74241828623787	1.05543831802033	2.20984427980759	1.01475993277594	2.04035699167072	1.06044080109575	2.22888910309446	1.85423040994198	0.696481060998546	0.575468592198994	0.965286201225318
Merged-chr12-4199347-2	chr12	4199247	4199447	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_138305, exon 8 of 21)	exon (NM_138305, exon 8 of 21)	34618.0	NM_134046	52504.0	Mm.70546	NM_134046	ENSMUSG00000020652	Cenpo	2810429O05Rik|8430427C03Rik|D12Ertd482e	centromere protein O	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47925249-2	chr17	47925149	47925349	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001110824)	promoter-TSS (NM_001110824)	-617.0	NM_001110825	74123.0	Mm.240062	NM_028767	ENSMUSG00000023991	Foxp4	1200010K03Rik|2310007G05Rik|mFKHLA	forkhead box P4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-100286126-6	chr14	100286038	100286238	+	868.388916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-136342.0	NM_010636	16597.0	Mm.396499	NM_010636	ENSMUSG00000072294	Klf12	2700063E05Rik|AI225908|AI315654|AP-2rep|B130052C06Rik|D530033K05Rik	Kruppel-like factor 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-87071107-3	chr15	87071033	87071233	+	677.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-473166.0	NM_001252310	106014.0	Mm.244319	NM_134096	ENSMUSG00000054863	Fam19a5	TAFA5|Tafa-5|Tara-5	family with sequence similarity 19, member A5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-37257731-4	chr10	37257625	37257825	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2c|LINE|L2	-118799.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-58574262-3	chr2	58574173	58574373	+	759.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289660, intron 1 of 7)	MIR3|SINE|MIR	6939.0	NM_001289660	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126585694-4	chr8	126585519	126585719	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7817.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75458824-4	chr11	75458696	75458896	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2743.0	NR_030711	100042498.0	Mm.482242	NR_030711	ENSMUSG00000085148	Mir22hg	2210403K04Rik|mir-22	Mir22 host gene (non-protein coding)	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122443550-4	chr8	122443448	122443648	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138656)	promoter-TSS (NM_138656)	-108.0	NR_045696	100689703.0	Mm.271989	NR_045696		9330133O14Rik	-	RIKEN cDNA 9330133O14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-72786397-2	chr2	72786297	72786497	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_102349, intron 5 of 5)	intron (NR_102349, intron 5 of 5)	27320.0	NR_102348	76218.0	Mm.75260	NR_102348	ENSMUSG00000085427	6430710C18Rik	5033406J01Rik	RIKEN cDNA 6430710C18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-35718243-4	chr2	35718201	35718401	+	987.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001602, intron 8 of 13)	intron (NM_001001602, intron 8 of 13)	21569.0	NM_001290639	69601.0	Mm.29629	NM_001001602	ENSMUSG00000026883	Dab2ip	2310011D08Rik|AI480459|Aip1|mKIAA1743	disabled 2 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10828701-2	chr19	10828601	10828801	+	567.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009852, intron 1 of 12)	intron (NM_009852, intron 1 of 12)	1357.0	NM_001037801	12511.0	Mm.290897	NM_009852	ENSMUSG00000024670	Cd6	-	CD6 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-122817767-3	chr10	122817666	122817866	+	901.138916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110218, intron 4 of 9)	intron (NM_001110218, intron 4 of 9)	138451.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-32520933-1	chr9	32520833	32521033	+	605.5	f0_balb.idr	intron (NM_008026, intron 1 of 8)	intron (NM_008026, intron 1 of 8)	20519.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-39918944-4	chr1	39918848	39919048	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252202, intron 2 of 29)	intron (NM_001252202, intron 2 of 29)	18035.0	NM_008696	26921.0	Mm.491139	NM_008696	ENSMUSG00000026074	Map4k4	9430080K19Rik|AU043147|AU045934|AW046177|HGK|Nik	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-60574495-1	chr19	60574395	60574595	+	597.0	f1_c57bl6.idr	intron (NM_001172097, intron 1 of 6)	Lx5|LINE|L1	6528.0	NM_001172097	78832.0	Mm.259026	NM_030197	ENSMUSG00000033417	Cacul1	2700078E11Rik|2810417M16Rik|9830127L17Rik|AI450346|D130033C15Rik	CDK2 associated, cullin domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21531304-2	chr9	21531204	21531404	+	912.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_206536, intron 2 of 5)	B1_Mur1|SINE|Alu	5127.0	NM_206536	382062.0	Mm.325205	NM_206536	ENSMUSG00000057191	AB124611	Gm1706	cDNA sequence AB124611	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-28513192-4	chr2	28513085	28513285	+	903.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145834)	promoter-TSS (NM_001145834)	18.0	NM_001145834	19730.0	Mm.5236	NM_009058	ENSMUSG00000026821	Ralgds	Gnds|Rgds|mKIAA1308	ral guanine nucleotide dissociation stimulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-18950890-5	chr8	18950761	18950961	+	946.909973	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286469)	promoter-TSS (NM_001286469)	10.0	NM_001286469	319581.0	Mm.111354	NM_176951	ENSMUSG00000039814	Xkr5	5430438H03Rik|XRG5	X-linked Kx blood group related 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-105640971-3	chr4	105640833	105641033	+	967.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	483586.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	2.25643067170455	1.79402154600432	1.16393402649869	1.36033271293421	1.95369428542318	2.08182048533481	1.74872380420459	2.05423192387087	0.659943611975678	0.535426888546313	0.95286627222167
Merged-chr11-116070379-2	chr11	116070279	116070479	+	804.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001009573, intron 14 of 32)	intron (NM_001009573, intron 14 of 32)	7582.0	NM_001009573	70450.0	Mm.259460	NM_001009573	ENSMUSG00000057948	Unc13d	2610108D09Rik|Jinx|Munc13-4|mFLJ00067	unc-13 homolog D (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-29219272-3	chr11	29219183	29219383	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_134034, exon 16 of 16)	3' UTR (NM_134034, exon 16 of 16)	27989.0	NM_025740	216618.0	Mm.128663	NM_025740	ENSMUSG00000020462	Cfap36	2300003H10|4931428D14Rik|Ccdc104	cilia and flagella associated protein 36	protein-coding	2.79391446258674	2.04607760851608	2.76836273206235	2.49228976536356	2.81621390090411	2.05980391484172	2.7893877650621	2.50472752566074	0.0382724762268191	0.960411458537921	0.998431161219273
Merged-chr18-25682467-2	chr18	25682367	25682567	+	629.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001362322, intron 1 of 12)	intron (NM_001362322, intron 1 of 12)	-2719.0	NM_001362337	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-76329183-4	chr12	76329042	76329242	+	808.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001101471, exon 2 of 2)	exon (NM_001101471, exon 2 of 2)	4251.0	NM_001101471	238276.0	Mm.311452	NM_001101471	ENSMUSG00000021057	Akap5	3526401B18Rik|AKAP 150|AKAP-5|AKAP150|BB098886|Gm258|P150	A kinase (PRKA) anchor protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-39469216-4	chr1	39469113	39469313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357521, intron 1 of 19)	intron (NM_001357521, intron 1 of 19)	9534.0	NM_018775	54610.0	Mm.387293	NM_018775	ENSMUSG00000003134	Tbc1d8	AD3|HBLP1|VRP	TBC1 domain family, member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-22003834-2	chr11	22003734	22003934	+	571.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2183.0	NM_011023	18423.0	Mm.129663	NM_011023	ENSMUSG00000005917	Otx1	A730044F23Rik|jv	orthodenticle homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-111537284-3	chr8	111537202	111537402	+	905.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001168621, exon 1 of 5)	exon (NM_001168621, exon 1 of 5)	662.0	NM_001168621	170737.0	Mm.271578	NM_133206	ENSMUSG00000033545	Znrf1	B830022L21Rik|Rnf42|Zrfp1|nin283	zinc and ring finger 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-8758352-2	chr3	8758252	8758452	+	945.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-91314.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71094017-4	chr17	71093921	71094121	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083934, intron 21 of 36)	intron (NM_001083934, intron 21 of 36)	74464.0	NM_001083934	17929.0	Mm.4103	NM_010867	ENSMUSG00000024049	Myom1	D430047A17Rik	myomesin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-10494193-4	chr7	10494089	10494289	+	928.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009577, intron 2 of 3)	intron (NM_009577, intron 2 of 3)	1192.0	NM_009577	22775.0	Mm.49441	NM_009577	ENSMUSG00000030393	Zik1	-	zinc finger protein interacting with K protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-44491078-4	chr13	44490989	44491189	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51362.0	NR_045489	69491.0	Mm.392410	NR_045489	ENSMUSG00000098144	1700029N11Rik	-	RIKEN cDNA 1700029N11 gene	ncRNA	4.91259452677467	4.86762471601051	4.28390177657727	4.51863184506445	3.99300526789388	4.33228189801356	4.19399936289129	3.86398478172	-0.737545333168163	0.0613733232087023	0.367565956002334
Merged-chr5-122264501-4	chr5	122264398	122264598	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039153)	promoter-TSS (NM_001039153)	-38.0	NM_001039153	654470.0	Mm.28804	NM_001039153	ENSMUSG00000038593	Tctn1	G730031O11Rik|Tect1	tectonic family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132786231-1	chr4	132786131	132786331	+	657.5	f0_c57.idr	exon (NM_001033308, exon 4 of 6)	exon (NM_001033308, exon 4 of 6)	10133.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140505967-2	chr5	140505867	140506067	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021528, intron 1 of 1)	intron (NM_021528, intron 1 of 1)	358.0	NM_021528	59031.0	Mm.28934	NM_021528	ENSMUSG00000036599	Chst12	AI595374|C4S-2|C4ST2	carbohydrate sulfotransferase 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-143188816-2	chr4	143188716	143188916	+	588.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001256380, intron 2 of 7)	intron (NM_001256380, intron 2 of 7)	23893.0	NM_001081355	110593.0	Mm.332020	NM_001081355	ENSMUSG00000057637	Prdm2	4833427P12Rik|E330024L24Rik|Gm1033|Gm19732|KMT8|Riz|Riz1|Znfpr1c1	PR domain containing 2, with ZNF domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-99712130-2	chr4	99712030	99712230	+	577.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-3500.0	NM_001081264	320438.0	Mm.32408	NM_001081264	ENSMUSG00000073792	Alg6	E230028F23Rik	asparagine-linked glycosylation 6 (alpha-1,3,-glucosyltransferase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-120742561-4	chr2	120742460	120742660	+	951.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024856, intron 15 of 15)	intron (NM_001024856, intron 15 of 15)	-11043.0	NM_026891	68968.0	Mm.2289	NM_026891	ENSMUSG00000027284	Cdan1	1500015A01Rik|AI448026|AW492297|CDA-I|CDA1|CDAI	congenital dyserythropoietic anemia, type I (human)	protein-coding	2.97845833208219	4.01125738550499	4.73097455706983	3.90934892211162	4.15082053611376	4.91079082421332	5.22119071020494	5.1429092152334	1.10738097524518	0.0156772708743411	0.149967847888438
Merged-chr19-54041075-2	chr19	54040975	54041175	+	547.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4107.0	NM_007417	11551.0	Mm.235195	NM_007417	ENSMUSG00000033717	Adra2a	AW122659|Adra-2|Adra-2a|alpha(2A)AR|alpha2-C10|alpha2A|alpha2A-AR	adrenergic receptor, alpha 2a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-58892307-3	chr9	58892164	58892364	+	705.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008684, intron 23 of 28)	intron (NM_008684, intron 23 of 28)	68752.0	NM_001081192	330953.0	Mm.151967	NM_001081192	ENSMUSG00000032338	Hcn4	Bcng3|Hcn3	hyperpolarization-activated, cyclic nucleotide-gated K+ 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-66005490-4	chr5	66005381	66005581	+	919.116699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1196.0	NR_027961	231253.0	Mm.436542	NM_177679	ENSMUSG00000054598	9130230L23Rik	-	RIKEN cDNA 9130230L23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41092095-4	chr19	41091983	41092183	+	933.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011904, intron 17 of 20)	intron (NM_011904, intron 17 of 20)	-14970.0	NM_153520	226115.0	Mm.54119	NM_153520	ENSMUSG00000050121	Opalin	Tmem10|Tmp10	oligodendrocytic myelin paranodal and inner loop protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-14544864-2	chr10	14544764	14544964	+	649.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001002268, intron 1 of 24)	intron (NM_001002268, intron 1 of 24)	172.0	NM_001002268	215798.0	Mm.440142	NM_001002268	ENSMUSG00000039116	Adgrg6	1190004A11Rik|AI449247|AW045736|DREG|Gm222|Gpr126	adhesion G protein-coupled receptor G6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44372587-2	chr7	44372487	44372687	+	792.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027049, intron 2 of 5)	L2b|LINE|L2	2443.0	NM_027049	69349.0	Mm.358922	NM_027049	ENSMUSG00000008028	1700008O03Rik	-	RIKEN cDNA 1700008O03 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-23816315-4	chr13	23816201	23816401	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144836, intron 5 of 11)	intron (NM_144836, intron 5 of 11)	9274.0	NM_144836	218103.0	Mm.24030	NM_144836	ENSMUSG00000036110	Slc17a2	C730032N17Rik|NPT3	solute carrier family 17 (sodium phosphate), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99025530-2	chr15	99025430	99025630	+	860.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-4361.0	NM_009448	22146.0	Mm.88212	NM_009448	ENSMUSG00000043091	Tuba1c	M[a]6|Tuba6	tubulin, alpha 1C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-149110268-3	chr3	149110182	149110382	+	670.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-155647.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	-0.242905446021162	-0.482703820442611	-0.486099413372421	0.0149493402058254	-0.492375740943836	-0.481936059004233	-0.171252753492764	-0.488252644786964	-1.31689627731536	0.617359203433628	1
Merged-chr1-53784440-4	chr1	53784331	53784531	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133810, intron 1 of 7)	intron (NM_133810, intron 1 of 7)	784.0	NM_133810	98267.0	Mm.25559	NM_133810	ENSMUSG00000026094	Stk17b	3110009A03Rik|AI120141|Drak2	serine/threonine kinase 17b (apoptosis-inducing)	protein-coding	4.71181099198275	3.49334358139312	4.06345866981778	3.0518677053047	4.41038346075543	3.8822537528893	3.67447743943097	2.80557906612034	-0.239161606957998	0.677109958117632	0.994620498390277
Merged-chr5-65857020-2	chr5	65856920	65857120	+	775.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6549.0	NM_001081105	74734.0	Mm.20323	NM_001081105	ENSMUSG00000029204	Rhoh	5830400A04Rik|AU019774|Arhh	ras homolog family member H	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120617038-2	chr11	120616938	120617138	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_024229, intron 1 of 13)	intron (NM_024229, intron 1 of 13)	852.0	NM_024229	68671.0	Mm.21439	NM_024229	ENSMUSG00000025137	Pcyt2	1110033E03Rik|ET	phosphate cytidylyltransferase 2, ethanolamine	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24628855-2	chr17	24628774	24628974	+	768.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039363, intron 5 of 39)	intron (NM_001039363, intron 5 of 39)	3753.0	NM_011647	22084.0	Mm.30435	NM_011647	ENSMUSG00000002496	Tsc2	Nafld|Tcs2	tuberous sclerosis 2	protein-coding	2.47568860024885	1.14251709634091	1.36116406813664	2.41084647855208	2.14435270637468	1.14813209741544	2.02138359651386	1.68918187404875	-0.491855954756791	0.666805717406283	0.992515300319318
Merged-chr1-62706404-6	chr1	62706326	62706526	+	832.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077404, intron 1 of 16)	CpG	3109.0	NM_001077407	18187.0	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-33851613-1	chr14	33851513	33851713	+	570.0	f0_balb.idr	Intergenic	Intergenic	-40330.0	NR_131113	218902.0	Mm.107791	NR_131113	ENSMUSG00000115751	4930503F20Rik	4930453C15	RIKEN cDNA 4930503F20 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-91168187-3	chr1	91168060	91168260	+	772.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033408, intron 13 of 15)	intron (NM_001033408, intron 13 of 15)	-11662.0	NM_016894	51801.0	Mm.3272	NM_016894	ENSMUSG00000034353	Ramp1	9130218E19Rik	receptor (calcitonin) activity modifying protein 1	protein-coding	0.952746068860568	1.2294303439817	0.671435040824053	0.662436904541211	1.46425082106261	1.24034443982492	0.673989851653754	1.47057501881385	1.59640564235491	0.293406556541761	0.797649214211793
Merged-chr12-76958677-2	chr12	76958577	76958777	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001146176, intron 1 of 3)	intron (NM_001146176, intron 1 of 3)	3571.0	NM_008558	17187.0	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-63910415-2	chr7	63910303	63910503	+	736.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_021366, intron 1 of 1)	intron (NM_021366, intron 1 of 1)	-6454.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	1.28571822989791	1.45807561908543	1.76436492117568	0.830785136125301	1.6211254430368	0.864009939702172	1.96726943514558	0.833079849138957	0.161838331706619	0.907241504018253	0.998431161219273
Merged-chr6-29527049-4	chr6	29526958	29527158	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311083, intron 1 of 9)	CpG	433.0	NM_012057	27056.0	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-108047843-2	chr9	108047743	108047943	+	694.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_013785, exon 6 of 6)	3' UTR (NM_013785, exon 6 of 6)	-1421.0	NM_177910	331026.0	Mm.22554	NM_177910	ENSMUSG00000070284	Gmppb	AI317178|E430010H19	GDP-mannose pyrophosphorylase B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-59130356-4	chr12	59130240	59130440	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146034, intron 1 of 24)	intron (NM_146034, intron 1 of 24)	592.0	NM_001165254	338320.0	Mm.213215	NM_146034	ENSMUSG00000021000	Mia2	Ctage5|D12Bwg0579e|Mea6|Mgea|Mgea6	melanoma inhibitory activity 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-41276027-1	chr8	41275927	41276127	+	597.0	f0_balb.idr	exon (NM_023662, exon 12 of 38)	exon (NM_023662, exon 12 of 38)	36268.0	NM_023662	18536.0	Mm.117896	NM_023662	ENSMUSG00000031592	Pcm1	2600002H09Rik|9430077F19Rik|C030044G17Rik	pericentriolar material 1	protein-coding	-0.459025212550444	-0.448087175968782	-0.451685360829227	-0.0470138394042832	-0.458346374128615	-0.258107054108087	-0.450892977673089	0.0629634622941934	0.825994071831843	0.751136161827421	1
Merged-chr5-143471729-4	chr5	143471630	143471830	+	763.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144915, intron 2 of 14)	intron (NM_144915, intron 2 of 14)	7237.0	NM_144915	231871.0	Mm.469963	NM_144915	ENSMUSG00000039206	Daglb	E330036I19Rik	diacylglycerol lipase, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-107311011-2	chr11	107310911	107311111	+	803.166626	f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 4 of 9)	intron (NR_153311, intron 4 of 9)	-121630.0	NM_001161329	68979.0	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91096244-2	chr2	91096144	91096344	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011355)	promoter-TSS (NM_011355)	-434.0	NM_011355	20375.0	Mm.1302	NM_011355	ENSMUSG00000002111	Spi1	Dis-1|Dis1|PU.1|Sfpi-1|Sfpi1|Spi-1|Tcfpu1|Tfpu.1	spleen focus forming virus (SFFV) proviral integration oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-46835626-4	chr17	46835519	46835719	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	-4206.0	NM_001100452	210982.0	Mm.37642	NM_001100452	ENSMUSG00000036568	Bicral	Gltscr1l|mKIAA0240	BRD4 interacting chromatin remodeling complex associated protein like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-30773566-3	chr10	30773446	30773646	+	828.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358842, intron 1 of 14)	intron (NM_001358842, intron 1 of 14)	29780.0	NM_001358841	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99284729-3	chr15	99284623	99284823	+	760.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081254, intron 2 of 7)	B4A|SINE|B4	2457.0	NM_001081254	545136.0	Mm.324745	NM_001081254	ENSMUSG00000078907	Fam186b	EG545136	family with sequence similarity 186, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139394116-2	chr5	139394016	139394216	+	728.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001362206, exon 2 of 2)	3' UTR (NM_001362206, exon 2 of 2)	4212.0	NM_001038703	80290.0	Mm.270003	NM_030258	ENSMUSG00000044197	Gpr146	BC003323|D830046C22Rik|PGR8	G protein-coupled receptor 146	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90521302-2	chr2	90521202	90521402	+	615.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	-42128.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-35106142-3	chr5	35106068	35106268	+	856.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013587)	promoter-TSS (NM_013587)	-471.0	NM_013587	16976.0	Mm.277661	NM_013587	ENSMUSG00000029103	Lrpap1	AA617339|AI790446|AU042172|C77774|HBP44|RAP	low density lipoprotein receptor-related protein associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-69126052-4	chr3	69125932	69126132	+	987.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008467, intron 1 of 16)	intron (NM_008467, intron 1 of 16)	1060.0	NM_008467	16649.0	Mm.30601	NM_008467	ENSMUSG00000027782	Kpna4	1110058D08Rik|IPOA3	karyopherin (importin) alpha 4	protein-coding	3.12234873375247	2.48517100380856	3.23651816467475	2.80980068999387	3.26727538951736	3.01456559633238	2.56362358694329	1.52016481245589	-0.354636528181566	0.648119974014855	0.984971605872381
Merged-chr4-11489250-4	chr4	11489149	11489349	+	864.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081183, intron 1 of 24)	intron (NM_001081183, intron 1 of 24)	3291.0	NM_001347055	66185.0	Mm.331487	NM_001081183	ENSMUSG00000040720	Virma	1110037F02Rik|4930422M05Rik|Kiaa1429|mKIAA1429	vir like m6A methyltransferase associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-77946485-4	chr2	77946377	77946577	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290740)	promoter-TSS (NM_001290740)	-121.0	NM_030560	80744.0	Mm.288151	NM_030560	ENSMUSG00000027014	Cwc22	AA684037|AI173004|AL022752|B230213M24|mKIAA1604	CWC22 spliceosome-associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117281114-2	chr10	117281014	117281214	+	782.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_017372, intron 1 of 3)	intron (NM_017372, intron 1 of 3)	1158.0	NM_017372	17105.0	Mm.45436	NM_017372	ENSMUSG00000069516	Lyz2	AI326280|Lys|Lysm|Lyzf2|Lyzs|Lzm|Lzm-s1|Lzp	lysozyme 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129634965-1	chr2	129634865	129635065	+	554.0	f1_c57bl6.idr	Intergenic	Intergenic	39503.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-75076014-2	chr5	75075905	75076105	+	691.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_133256, exon 1 of 2)	exon (NM_133256, exon 1 of 2)	404.0	NM_133256	14843.0	Mm.218752	NM_133256	ENSMUSG00000035946	Gsx2	Gsh-2|Gsh2	GS homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-134760998-5	chr4	134760915	134761115	+	901.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145554, intron 1 of 8)	intron (NM_145554, intron 1 of 8)	6989.0	NM_145554	100017.0	Mm.27486	NM_145554	ENSMUSG00000037295	Ldlrap1	AA691260|ARH2|Arh|Arh1|FHCB1|FHCB2	low density lipoprotein receptor adaptor protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30232260-1	chr7	30232160	30232360	+	1000.0	f1_c57bl6.idr	promoter-TSS (NM_001360648)	promoter-TSS (NM_001360648)	-63.0	NM_025548	66411.0	Mm.27947	NM_025548	ENSMUSG00000006095	Tbcb	2410007D12Rik|AU041393|CG22|CKAPI|Ckap1	tubulin folding cofactor B	protein-coding	1.50399342794673	1.02587125188534	1.93019113381934	1.59330983915349	1.17254972521653	1.03171120003647	2.66608266193931	2.43982962164257	1.27428504300106	0.280255441695996	0.783412873231201
Merged-chr2-102057575-1	chr2	102057475	102057675	+	633.0	f0_balb.idr	intron (NM_178886, intron 4 of 5)	intron (NM_178886, intron 4 of 5)	128885.0	NM_178886	241576.0	Mm.489740	NM_178886	ENSMUSG00000048058	Ldlrad3	6430500P08|AI194318|Lrad3	low density lipoprotein receptor class A domain containing 3	protein-coding	-0.424634778093827	-0.405981418687425	-0.412013696993628	-0.416719408774737	-0.0961319595038299	-0.40463182371752	0.744127102064657	-0.415894018551646	3.97068876009508	0.107408283015322	1
Merged-chr18-77063576-1	chr18	77063476	77063676	+	615.0	f0_balb.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	-1632.0	NM_008602	17344.0	Mm.6370	NM_008602	ENSMUSG00000025423	Pias2	6330408K17Rik|AI462206|ARIP3|AU018068|Dib|Miz1|PIASxalpha|PIASxb|PIASxbeta|SIZ2	protein inhibitor of activated STAT 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-58627395-4	chr9	58627287	58627487	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357751, intron 3 of 8)	intron (NM_001357751, intron 3 of 8)	45147.0	NM_001357751	20320.0	Mm.15125	NM_009145	ENSMUSG00000032336	Nptn	AW554172|SDR-1|Sdfr1	neuroplastin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-67220066-2	chr7	67219966	67220166	+	890.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_131044, exon 2 of 3)	non-coding (NR_131044, exon 2 of 3)	2392.0	NR_131044	76628.0	Mm.384589	NR_131043	ENSMUSG00000097527	1700112J16Rik	-	RIKEN cDNA 1700112J16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-113444006-1	chr2	113443906	113444106	+	785.0	f0_balb.idr	intron (NM_001285459, intron 1 of 16)	intron (NM_001285459, intron 1 of 16)	2942.0	NM_001285459	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-64120076-2	chr9	64119976	64120176	+	913.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_145835, intron 5 of 13)	MLT1A1|LTR|ERVL-MaLR	2929.0	NM_145835	235435.0	Mm.436581	NM_145835	ENSMUSG00000032401	Lctl	E130104I05Rik|KLPH	lactase-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-105306196-3	chr13	105306104	105306304	+	796.244446	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11719.0	NM_001360891	71816.0	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118589468-4	chr9	118589341	118589541	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17268.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80545475-2	chr10	80545375	80545575	+	732.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_025852, exon 7 of 15)	exon (NM_025852, exon 7 of 15)	-6351.0	NM_026094	67331.0	Mm.52511	NM_026094	ENSMUSG00000003341	Atp8b3	1700042F02Rik|1700056N23Rik|ATPIK|SAPLT	ATPase, class I, type 8B, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-116077665-4	chr9	116077572	116077772	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	97691.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-155810243-3	chr1	155810152	155810352	+	691.305542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024945, intron 1 of 11)	intron (NM_001024945, intron 1 of 11)	2647.0	NM_023268	104009.0	Mm.27035	NM_023268	ENSMUSG00000033684	Qsox1	1300003H02Rik|QSOX|Qscn6|SOx|b2b2673Clo	quiescin Q6 sulfhydryl oxidase 1	protein-coding	2.24232048981329	2.51255937864398	2.13855519759228	2.36144887080149	2.1353094073959	3.2155594223154	2.78099277586386	2.69673311582413	0.934921307036651	0.224696999290549	0.716363489146504
Merged-chr11-108353139-3	chr11	108353017	108353217	+	757.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9229.0	NM_011101	18750.0	Mm.222178	NM_011101	ENSMUSG00000050965	Prkca	AI875142|Pkca	protein kinase C, alpha	protein-coding	0.628075485406899	0.670058856293719	0.656598616807914	0.848274809391023	1.09971923105385	1.73842895270062	1.34550992428621	1.50691906976388	4.13691998416684	0.00785635950019147	0.0918147566891454
Merged-chr6-114395520-4	chr6	114395400	114395600	+	910.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2436.0	NM_001317125	15465.0	Mm.333327	NM_008285	ENSMUSG00000053004	Hrh1	Bphs|H1R|HH1R|Hir	histamine receptor H1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-124071704-4	chr9	124071608	124071808	+	990.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30475.0	NM_009915	12772.0	Mm.6272	NM_009915	ENSMUSG00000049103	Ccr2	Cc-ckr-2|Ccr2a|Ccr2b|Ckr2|Ckr2a|Ckr2b|Cmkbr2|mJe-r	chemokine (C-C motif) receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-130827485-1	chr7	130827385	130827585	+	543.0	f1_balb.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-38239.0	NM_133942	101476.0	Mm.323554	NM_133942	ENSMUSG00000040268	Plekha1	AA960558|C920009D07Rik|TAPP1	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-68435768-1	chr2	68435668	68435868	+	557.0	f0_balb.idr	intron (NM_016866, intron 1 of 17)	intron (NM_016866, intron 1 of 17)	36213.0	NM_016866	53416.0	Mm.198414	NM_016866	ENSMUSG00000027030	Stk39	AW227544|AW556857|DCHT|RF005|Rnl5|SPAK	serine/threonine kinase 39	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-81350355-4	chr13	81350243	81350443	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 83 of 89)	intron (NM_054053, intron 83 of 89)	282801.0	NM_054053	110789.0	Mm.288694	NM_054053	ENSMUSG00000069170	Adgrv1	Frings|Gpr98|Mass1|Mgr1|VLGR1	adhesion G protein-coupled receptor V1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-144909955-2	chr7	144909855	144910055	+	933.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5145.0	NM_001357868	72284.0	Mm.273049	NM_028184	ENSMUSG00000031072	Oraov1	2210010N10Rik|TAOS1	oral cancer overexpressed 1	protein-coding	1.85883339208682	3.1549076015363	2.96890576297628	1.28809302544021	3.08135987231561	2.29983515602766	2.90908752472708	1.29451361019975	0.052573719338673	0.95760895337553	0.998431161219273
Merged-chr2-131909935-4	chr2	131909852	131910052	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011170)	promoter-TSS (NM_011170)	24.0	NM_001278256	19122.0	Mm.648	NM_011170	ENSMUSG00000079037	Prnp	AA960666|AI325101|CD230|PrP|PrP<C>|PrPC|PrPSc|Prn-i|Prn-p|Sinc|prP27-30|prP33-35C	prion protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-123798342-2	chr9	123798242	123798442	+	884.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110253, intron 15 of 17)	L2a|LINE|L2	-8135.0	NM_030712	80901.0	Mm.124289	NM_030712	ENSMUSG00000048521	Cxcr6	BB217514|BONZO|STRL33	chemokine (C-X-C motif) receptor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36962443-7	chr1	36962363	36962563	+	971.714294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22936.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-65167065-1	chr14	65166965	65167165	+	550.0	f0_balb.idr	Intergenic	Intergenic	-68959.0	NM_001360385	54616.0	Mm.103748	NM_018788	ENSMUSG00000021978	Extl3	2900009G18Rik|AU040105|Ext1l|mKIAA0519	exostoses (multiple)-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-28967892-4	chr4	28967794	28967994	+	998.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001290434)	TTS (NM_001290434)	-100185.0	NR_151693	102634169.0		NR_151693		Gm11917	-	predicted gene 11917	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-102898627-4	chr14	102898527	102898727	+	761.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	84005.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-92301657-2	chr16	92301557	92301757	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_138743, intron 1 of 3)	intron (NM_138743, intron 1 of 3)	354.0	NM_138743	68936.0	Mm.21698	NM_138743	ENSMUSG00000051989	Smim11	1190017O12Rik|C21orf51|Fam165b|Smim11a	small integral membrane protein 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-118803905-2	chr10	118803805	118804005	+	867.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	64998.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-94343862-2	chr11	94343742	94343942	+	745.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029600, intron 30 of 30)	intron (NM_029600, intron 30 of 30)	15841.0	NM_146024	71452.0	Mm.141054	NM_027799	ENSMUSG00000020864	Ankrd40	1110011C06Rik|5530600A18Rik|Gcap15	ankyrin repeat domain 40	protein-coding	1.00340854555105	0.59421258805885	0.582304866332405	0.572978979891319	1.55420923676797	1.31031108214418	0.584948214370743	1.41091723653009	2.80148380707079	0.0950444458052872	0.477397401941879
Merged-chr7-90442754-4	chr7	90442699	90442899	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145151)	promoter-TSS (NM_145151)	18.0	NR_073438	233490.0	Mm.29496	NM_145151	ENSMUSG00000051451	Crebzf	1110034C16Rik|6330417B10Rik|LAZip|LAZipII|SMILE|Zf	CREB/ATF bZIP transcription factor	protein-coding	5.66233678563347	5.43749569078244	4.94560810617147	5.3307511674952	5.45634463898767	5.04955011717032	5.91466476306036	5.51555382703303	0.168952509711715	0.57030038002659	0.962718661854691
Merged-chr7-90133471-4	chr7	90133376	90133576	+	921.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360867, intron 1 of 19)	intron (NM_001360867, intron 1 of 19)	3263.0	NM_001252520	233489.0	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	2.57658400864221	2.38328318153037	3.8930114075766	1.86256181573667	2.694836142214	2.40249986345448	3.34012575450445	1.36282896231924	-0.519982257640496	0.558248609018208	0.960321604678676
Merged-chr19-36347545-3	chr19	36347493	36347693	+	806.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31474.0	NM_029508	76073.0	Mm.259180	NM_029508	ENSMUSG00000024805	Pcgf5	0610009F02Rik|1110054A01Rik|5830406C17Rik|5830443C21Rik|9530023M17Rik|AI324127	polycomb group ring finger 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-123224849-4	chr8	123224737	123224937	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_194446)	promoter-TSS (NM_194446)	-4.0	NM_194446	234854.0	Mm.190984	NM_194444	ENSMUSG00000033862	Cdk10	BC017131	cyclin-dependent kinase 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-11196932-2	chr12	11196832	11197032	+	731.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_131084, intron 2 of 4)	intron (NR_131084, intron 2 of 4)	7570.0	NR_131084	77442.0	Mm.159922	NR_131083	ENSMUSG00000112041	9530020I12Rik	-	RIKEN cDNA 9530020I12 gene	ncRNA	1.59157430798808	1.21395888177601	0.79590503566484	1.60432086659493	1.331346077046	0.812321836599986	0.798884428066384	1.61404555700704	-0.570226394996467	0.691658962532064	0.997179071432312
Merged-chr14-73327008-2	chr14	73326908	73327108	+	895.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1186.0	NM_009029	19645.0	Mm.273862	NM_009029	ENSMUSG00000022105	Rb1	Rb|Rb-1|pRb|pp105	RB transcriptional corepressor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-124703965-7	chr4	124703942	124704142	+	849.5618900000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010213, intron 1 of 5)	(TG)n|Simple_repeat|Simple_repeat	3343.0	NM_010213	14201.0	Mm.331856	NM_010213	ENSMUSG00000032643	Fhl3	SLIM2	four and a half LIM domains 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70650595-4	chr11	70650500	70650700	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316728, intron 8 of 9)	intron (NM_001316728, intron 8 of 9)	3313.0	NM_027445	70510.0	Mm.261818	NM_027445	ENSMUSG00000040746	Rnf167	0610010G05Rik|5730408C10Rik|AU019305|AV328608	ring finger protein 167	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-119818029-4	chr13	119817937	119818137	+	983.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER4B|LTR|ERVK	12180.0	NM_001001449	380878.0	Mm.327311	NM_001001449	ENSMUSG00000094237	AF067063	-	cDNA sequence AF067063	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-79126557-2	chr15	79126457	79126657	+	667.083313	f1_balb.idr|f1_c57bl6.idr	intron (NM_177461, intron 8 of 15)	MT2B|LTR|ERVL	14694.0	NM_001310581	27660.0	Mm.390827	NM_138581	ENSMUSG00000033029	1700088E04Rik	ESTJ0827E04	RIKEN cDNA 1700088E04 gene	protein-coding	-1.32440223303897	-1.29339468673833	-0.717877708899544	-1.31276353204239	-1.32392690786997	-1.29109028300231	-1.30162128075409	-1.31119997543009	-2.49510383040271	0.470258445164311	1
Merged-chr10-57760909-4	chr10	57760789	57760989	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-24034.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69580340-4	chr11	69580248	69580448	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011640)	promoter-TSS (NM_011640)	-11.0	NM_011640	22059.0	Mm.222	NM_011640	ENSMUSG00000059552	Trp53	Tp53|bbl|bfy|bhy|p44|p53	transformation related protein 53	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-143065378-3	chr5	143065284	143065484	+	889.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359851, intron 12 of 15)	intron (NM_001359851, intron 12 of 15)	47636.0	NM_207110	108086.0	Mm.381440	NM_080561	ENSMUSG00000045078	Rnf216	2810055G22Rik|AI647468|AU019462|C86502|F830018F18Rik|TRIAD3|UIP83|Ubce7ip1	ring finger protein 216	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-65540849-8	chr17	65540725	65540925	+	865.8978880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289486)	promoter-TSS (NM_001289486)	-43.0	NM_001289486	381107.0	Mm.141275	NM_001008973	ENSMUSG00000045036	Tmem232	E130009J12Rik|Gm940|Tes13-L|Tes13-S	transmembrane protein 232	protein-coding	0.999004252022316	1.51460087304073	1.34690139900503	1.39376401788007	0.56031073475952	0.596182156499831	0.584669635372004	0.574725901136889	-4.77643247702146	0.00333342794250578	0.0489328733126236
Merged-chr19-29366367-4	chr19	29366267	29366467	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1071.0	NM_021893	60533.0	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-68189950-4	chr18	68189852	68190052	+	949.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172631, intron 3 of 5)	intron (NM_172631, intron 3 of 5)	-37994.0	NM_001357444	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180231833-4	chr1	180231735	180231935	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001128605, intron 7 of 10)	L1MB3|LINE|L1	14115.0	NM_011183	19165.0	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-33818191-2	chr5	33818091	33818291	+	767.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24921.0	NM_175231	107823.0	Mm.19892	NM_175231	ENSMUSG00000057406	Nsd2	5830445G22Rik|9430010A17Rik|AW555663|C130020C13Rik|D030027O06Rik|D930023B08Rik|MMSET|Whsc1|Whsc1l|mKIAA1090	nuclear receptor binding SET domain protein 2	protein-coding	-1.20406370813143	-1.56956373024278	-1.57884638916872	-1.58647144159385	-1.598104728449	-1.56755213932999	-1.57674499865798	-1.58510656085539	-1.70745470802464	0.626337835847419	1
Merged-chr1-92906138-4	chr1	92906026	92906226	+	779.299988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175118)	promoter-TSS (NM_175118)	-863.0	NM_175118	67446.0	Mm.46179	NM_175118	ENSMUSG00000047067	Dusp28	0710001B24Rik|AV005521	dual specificity phosphatase 28	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-124312282-3	chr9	124312195	124312395	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001243117, intron 1 of 4)	intron (NM_001243117, intron 1 of 4)	399.0	NM_001243118	630836.0	Mm.458553	NM_001243117	ENSMUSG00000074829	2010315B03Rik	BC029716	RIKEN cDNA 2010315B03 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-99975231-3	chr12	99975137	99975337	+	798.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164426, intron 2 of 2)	L1M4|LINE|L1	10738.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-34256818-4	chr13	34256707	34256907	+	877.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033167, intron 3 of 10)	L1MB1|LINE|L1	88375.0	NM_001033167	73102.0	Mm.23932	NM_001033167	ENSMUSG00000038267	Slc22a23	3110004L20Rik	solute carrier family 22, member 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-59349411-2	chr2	59349311	59349511	+	755.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 19 of 20)	intron (NM_175464, intron 19 of 20)	37271.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-6715813-4	chr10	6715723	6715923	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	-42770.0	NM_001302794	18390.0	Mm.438000	NM_011013	ENSMUSG00000000766	Oprm1	M-OR-1|MOP-R|MOR-1|MOR-1O|Oprm|mor|muOR	opioid receptor, mu 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-87796523-4	chr17	87796415	87796615	+	752.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199251, intron 1 of 1)	intron (NM_199251, intron 1 of 1)	1479.0	NM_199251	210741.0	Mm.312046	NM_199251	ENSMUSG00000050138	Kcnk12	mntk1	potassium channel, subfamily K, member 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89914303-2	chr3	89914203	89914403	+	857.416626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1107.0	NM_010559	16194.0	Mm.2856	NM_010559	ENSMUSG00000027947	Il6ra	CD126|IL-6R|IL-6R-alpha|IL-6RA|Il6r	interleukin 6 receptor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135479389-4	chr5	135479280	135479480	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146001, intron 1 of 30)	intron (NM_146001, intron 1 of 30)	65742.0	NM_146001	215114.0	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-18949834-2	chr8	18949734	18949934	+	634.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001286469, exon 1 of 7)	5' UTR (NM_001286469, exon 1 of 7)	1037.0	NM_001286469	319581.0	Mm.111354	NM_176951	ENSMUSG00000039814	Xkr5	5430438H03Rik|XRG5	X-linked Kx blood group related 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-45333177-1	chr19	45333077	45333277	+	596.0	f0_balb.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-30557.0	NM_001360122	12234.0	Mm.119717	NM_009771	ENSMUSG00000025217	Btrc	Beta-Trcp1|E3RS-IkappaB|E3RSIkappaB|FWD1|Fbw1a|HOS|SCF b-TRCP|Slimb|b-TrCP|beta-TrCP	beta-transducin repeat containing protein	protein-coding	0.434797687610514	0.502227278552465	0.480310408438474	0.304778889532507	0.560877212883199	0.665604962911074	0.971991811967024	0.466275078052938	1.80061210458369	0.282267128807673	1
Merged-chr8-111937322-4	chr8	111937231	111937431	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16|LTR|ERVK	-3372.0	NM_026693	93739.0	Mm.371666	NM_026693	ENSMUSG00000031950	Gabarapl2	0610012F20Rik|2900019O08Rik|AI173605|GATE-16|Gef2	gamma-aminobutyric acid (GABA) A receptor-associated protein-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-29434799-4	chr17	29434694	29434894	+	907.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56251.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	-1.50537975133656	-1.47318037575974	-1.48291773270558	-1.33770320931865	-1.50311941470772	-1.47107024988922	-1.17428725192211	-1.48948455011659	0.879189138226032	0.800773123864259	1
Merged-chr11-97556250-2	chr11	97556088	97556288	+	937.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_018873, intron 1 of 19)	intron (NM_018873, intron 1 of 19)	18938.0	NM_018873	56013.0	Mm.342665	NM_018873	ENSMUSG00000038453	Srcin1	P140|SNIP|mKIAA1684|p140Cap	SRC kinase signaling inhibitor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-94332023-3	chr16	94331920	94332120	+	701.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133229, intron 2 of 3)	intron (NM_133229, intron 2 of 3)	3598.0	NM_133229	170765.0	Mm.42604	NM_133229	ENSMUSG00000022941	Ripply3	Dscr6	ripply transcriptional repressor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88171353-2	chr3	88171253	88171453	+	778.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_045997)	TTS (NR_045997)	6432.0	NR_045997	76642.0	Mm.424420	NR_045997	ENSMUSG00000096935	1700113A16Rik	2210408E11Rik|AA408983	RIKEN cDNA 1700113A16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-57519370-5	chr11	57519196	57519396	+	845.5047609999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001168668)	promoter-TSS (NM_001168668)	631.0	NM_145426	216760.0	Mm.30501	NM_145426	ENSMUSG00000020522	Mfap3	2610509F16Rik|2700079M14Rik|AW536327	microfibrillar-associated protein 3	protein-coding	2.8179406489325	2.34414992363109	2.26817473140504	2.73686053114231	2.23782297389419	2.49988851714499	2.83519882525622	1.90400338042809	-0.335090542934679	0.67289683210493	0.99440487726309
Merged-chr6-86365572-4	chr6	86365474	86365674	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025591)	promoter-TSS (NM_025591)	-109.0	NM_025591	66488.0	Mm.422972	NM_025591	ENSMUSG00000057497	Fam136a	2010309E21Rik|AW124904|Hyccin	family with sequence similarity 136, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-4213058-2	chr12	4212958	4213158	+	554.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001361641)	TTS (NM_001361641)	20907.0	NM_134046	52504.0	Mm.70546	NM_134046	ENSMUSG00000020652	Cenpo	2810429O05Rik|8430427C03Rik|D12Ertd482e	centromere protein O	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-136329219-3	chr3	136329134	136329334	+	736.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3168.0	NM_001033350	242248.0	Mm.30832	NM_001033350	ENSMUSG00000037922	Bank1	A530094C12Rik|AI451642|AVIEF|BANK	B cell scaffold protein with ankyrin repeats 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-118125876-2	chr7	118125776	118125976	+	579.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019419, intron 3 of 5)	intron (NM_019419, intron 3 of 5)	3749.0	NM_019419	54208.0	Mm.29924	NM_019419	ENSMUSG00000030654	Arl6ip1	AIP-6|AL022945|ARMER|AU042858|Aip-1|Arl6ip|C85138|mKIAA0069	ADP-ribosylation factor-like 6 interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-137338853-3	chr5	137338768	137338968	+	765.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2008.0	NM_001359611	83704.0	Mm.235625	NM_031406	ENSMUSG00000037344	Slc12a9	CIP1	solute carrier family 12 (potassium/chloride transporters), member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-3995677-2	chr11	3995577	3995777	+	778.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177691, intron 1 of 2)	intron (NM_001177691, intron 1 of 2)	5744.0	NM_001177691	53897.0	Mm.103414	NM_016922	ENSMUSG00000049721	Gal3st1	Cst|Gcst	galactose-3-O-sulfotransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-59510153-4	chr13	59510064	59510264	+	906.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001048008, intron 11 of 17)	intron (NM_001048008, intron 11 of 17)	34287.0	NM_001284221	67269.0	Mm.153008	NM_023328	ENSMUSG00000021557	Agtpbp1	1700020N17Rik|2310001G17Rik|2900054O13Rik|4930445M19Rik|5730402G09Rik|CCP1|Nna1|nmf243|pcd	ATP/GTP binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-22190718-3	chr3	22190594	22190794	+	800.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030732, intron 5 of 15)	intron (NM_030732, intron 5 of 15)	-60676.0	NR_004439	19784.0		NR_004439		Rprl2	RPRH3|Rmrp3	ribonuclease P RNA-like 2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-93298392-4	chr15	93298316	93298516	+	797.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024189, intron 2 of 3)	intron (NM_024189, intron 2 of 3)	-23237.0	NM_001346785	223827.0	Mm.22819	NM_001033275	ENSMUSG00000036197	Gxylt1	Glt8d3|Gm1228|Gm87	glucoside xylosyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-46786168-1	chr13	46786068	46786268	+	786.0	f1_balb.idr	intron (NM_010617, intron 24 of 37)	ORR1A4|LTR|ERVL-MaLR	-58319.0	NM_175749	218210.0	Mm.255398	NM_175749	ENSMUSG00000021374	Nup153	B130015D15Rik|C88147	nucleoporin 153	protein-coding	-0.585927911734474	-0.568369035868381	-0.5740393217139	-0.578468031764708	-0.402325166797131	-0.567101503894093	0.602836951305096	-0.577690890256148	3.86243524746865	0.131279043761381	1
Merged-chr11-116854369-1	chr11	116854269	116854469	+	615.0	f1_c57bl6.idr	intron (NM_178620, intron 1 of 12)	intron (NM_178620, intron 1 of 12)	369.0	NM_001361586	69900.0	Mm.348004	NM_178620	ENSMUSG00000020818	Mfsd11	2600014M03Rik	major facilitator superfamily domain containing 11	protein-coding	0.306106250487114	0.331947307432934	0.818103940114808	0.896765367835879	0.608108931398123	1.22388804145198	0.325416343222473	0.318180944250666	0.345767875043573	0.85193826955311	1
Merged-chr16-82631334-2	chr16	82631234	82631434	+	872.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	1430637.0	NM_010954	17968.0	Mm.433941	NM_010954	ENSMUSG00000022762	Ncam2	Ncam-2|Ocam|RNCAM	neural cell adhesion molecule 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-33045863-3	chr13	33045783	33045983	+	611.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18469.0	NM_011452	20706.0	Mm.45371	NM_011452	ENSMUSG00000021403	Serpinb9b	1600019A21Rik|R86|SPI-CI|Spi10|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 9b	protein-coding	2.02038173379557	1.07603766413961	1.84953068247988	2.89995640849154	1.22007247493748	1.0821807198094	1.71098212863331	2.1544988502828	-1.3080109958655	0.254785510083815	0.752935110833896
Merged-chr7-25682075-2	chr7	25681975	25682175	+	575.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172148, intron 1 of 2)	L2a|LINE|L2	917.0	NM_172148	232987.0	Mm.22849	NM_172148	ENSMUSG00000063439	B9d2	stumpy	B9 protein domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-93688435-2	chr1	93688335	93688535	+	825.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_016778, intron 2 of 4)	intron (NM_016778, intron 2 of 4)	2860.0	NM_016778	51800.0	Mm.3295	NM_016778	ENSMUSG00000026278	Bok	matador|mtd	BCL2-related ovarian killer	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127931718-4	chr7	127931618	127931818	+	883.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001319147)	TTS (NM_001319147)	-1605.0	NM_133351	76560.0	Mm.5875	NM_133351	ENSMUSG00000030800	Prss8	2410039E18Rik|AI313909|C79772|CAP1|fr|mCAP1	protease, serine 8 (prostasin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-7906676-4	chr15	7906561	7906761	+	937.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081402, intron 13 of 17)	intron (NM_001081402, intron 13 of 17)	91111.0	NM_001301357	14573.0	Mm.4679	NM_010275	ENSMUSG00000022144	Gdnf	AI385739|ATF	glial cell line derived neurotrophic factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-82995285-2	chr6	82995185	82995385	+	911.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_033079, intron 4 of 9)	intron (NM_033079, intron 4 of 9)	38186.0	NM_010070	13448.0	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-101860776-1	chr5	101860676	101860876	+	649.0	f1_balb.idr	intron (NM_172882, intron 53 of 66)	intron (NM_172882, intron 53 of 66)	95646.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-120451672-4	chr6	120451571	120451771	+	850.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-11526.0	NM_008359	16172.0	Mm.4481	NM_008359	ENSMUSG00000002897	Il17ra	AW538159|Cdw217|Il17r|VDw217	interleukin 17 receptor A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-87331294-4	chr17	87331188	87331388	+	852.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028639, intron 10 of 19)	intron (NM_028639, intron 10 of 19)	48402.0	NM_028639	225049.0	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83118579-2	chr6	83118479	83118679	+	582.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_016757)	TTS (NM_016757)	2882.0	NM_001083923	22377.0	Mm.1109	NM_016757	ENSMUSG00000030035	Wbp1	AI255152	WW domain binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-14832981-3	chr3	14832861	14833061	+	969.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24596.0	NM_009799	12346.0	Mm.273195	NM_009799	ENSMUSG00000027556	Car1	AW555628|Ca1|Car-1	carbonic anhydrase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-96510619-1	chr7	96510519	96510719	+	568.0	f0_balb.idr	intron (NM_001310762, intron 4 of 32)	intron (NM_001310762, intron 4 of 32)	-168655.0	NR_046043	670727.0	Mm.421352	NR_046043	ENSMUSG00000085751	Gm15412	-	predicted gene 15412	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-72255186-3	chr1	72255082	72255282	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155355, intron 1 of 3)	U2|snRNA|snRNA	11189.0	NR_155355	320933.0	Mm.440953	NR_155355		D230017M19Rik	B930094L07Rik	RIKEN cDNA D230017M19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-105981185-2	chr3	105981087	105981287	+	726.25	f0_balb.idr|f1_balb.idr	intron (NM_007696, intron 8 of 10)	intron (NM_007696, intron 8 of 10)	7385.0	NM_007696	12659.0	Mm.431947	NM_007696	ENSMUSG00000074340	Ovgp1	120kDa|AU016433|AU019448|Chit5|MOGP|OGP|muc9	oviductal glycoprotein 1	protein-coding	2.63285044461208	2.55444206512564	2.98116156458289	1.51800391780634	3.37474314540946	3.21660660105337	4.06545163560943	3.18676469967141	1.70277723502066	0.0150524189085537	0.145536924260393
Merged-chr11-83221594-4	chr11	83221490	83221690	+	911.2291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1986.0	NR_015519	100043636.0	Mm.295569	NR_015519	ENSMUSG00000087107	AI662270	AW496474	expressed sequence AI662270	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101244136-4	chr15	101244018	101244218	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18932.0	NR_045328	380977.0	Mm.399924	NR_045326	ENSMUSG00000097915	A330009N23Rik	-	RIKEN cDNA A330009N23 gene	ncRNA	5.54281208287943	6.01742685739142	5.35967297714098	5.48372620608752	5.38058765675455	5.61695092400976	5.7775372408094	5.28238205235532	-0.108467323695692	0.693680883867154	0.997536945022547
Merged-chr19-6292242-4	chr19	6292122	6292322	+	978.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010119, intron 2 of 4)	intron (NM_010119, intron 2 of 4)	-14235.0	NM_001033342	240505.0	Mm.329622	NM_001033342	ENSMUSG00000024769	Cdc42bpg	BC046418|MRCKgamma	CDC42 binding protein kinase gamma (DMPK-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-45759546-2	chr17	45759501	45759701	+	689.125	f1_balb.idr|f1_c57bl6.idr	intron (NR_152153, intron 2 of 4)	intron (NR_152153, intron 2 of 4)	25095.0	NR_152153	433111.0	Mm.213441	NR_152153	ENSMUSG00000097727	F630040K05Rik	-	RIKEN cDNA F630040K05 gene	ncRNA	-2.18308165884198	-2.15547475440471	-2.16382331017202	-2.1706810624505	-2.18114370519566	-2.15366558754311	-2.03057248461154	-2.16945352807143	0.759018020146679	0.829933115115583	1
Merged-chr15-76902811-2	chr15	76902711	76902911	+	662.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1260.0	NM_012053	26961.0	Mm.30066	NM_012053	ENSMUSG00000003970	Rpl8	-	ribosomal protein L8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-83872976-4	chr17	83872874	83873074	+	870.1083369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18556.0	NR_155491	320021.0	Mm.379475	NR_155490		C430042M11Rik	-	RIKEN cDNA C430042M11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141573640-7	chr4	141573496	141573696	+	878.18335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26328.0	NM_001163256	74202.0	Mm.490327	NM_133754	ENSMUSG00000006219	Fblim1	2410043F08Rik|Cal|Fblp1|Gt10|migfilin|migfilin(s)	filamin binding LIM protein 1	protein-coding	2.22703686253744	2.30348863222107	0.934540626944369	1.63703218711296	1.77802360953866	1.43917291187378	0.939466002922337	0.920094739233971	-1.6804942576641	0.19181642544887	0.670131801310842
Merged-chr16-3718563-2	chr16	3718463	3718663	+	834.916687	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161790)	promoter-TSS (NM_001161790)	-439.0	NM_001161791	54483.0	Mm.143718	NM_019453	ENSMUSG00000022534	Mefv	FMF|TRIM20|pyrin	Mediterranean fever	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-43558038-4	chr17	43557926	43558126	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10425.0	NM_013737	27226.0	Mm.9277	NM_013737	ENSMUSG00000023913	Pla2g7	PAF-AH|R75400	phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-32150337-2	chr9	32150237	32150437	+	588.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001195632, intron 2 of 21)	Looper|DNA|PiggyBac	34201.0	NM_001195632	330914.0	Mm.46683	NM_177379	ENSMUSG00000041444	Arhgap32	3426406O18Rik|Gc-gap|Grit|Px-rics|Rics|mKIAA0712|p200Rhogap|p250Gap	Rho GTPase activating protein 32	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-145161306-4	chr2	145161219	145161419	+	793.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6456.0	NM_001356497	94249.0	Mm.217171	NM_053195	ENSMUSG00000063873	Slc24a3	NCKX3	solute carrier family 24 (sodium/potassium/calcium exchanger), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-5137784-2	chr2	5137684	5137884	+	634.666687	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028804)	promoter-TSS (NM_028804)	8.0	NM_028804	74186.0	Mm.274715	NM_028804	ENSMUSG00000026676	Ccdc3	2310045O21Rik	coiled-coil domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-28188162-3	chr15	28188052	28188252	+	878.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15614.0	NM_133365	110082.0	Mm.248464	NM_133365	ENSMUSG00000022262	Dnah5	AU022615|Dnahc5|Mdnah5|b2b1134Clo|b2b1154Clo|b2b1537Clo|b2b1565Clo|b2b3491Clo|b2b601Clo|mKIAA1603	dynein, axonemal, heavy chain 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-73133223-4	chr11	73133109	73133309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361245, intron 24 of 30)	intron (NM_001361245, intron 24 of 30)	5085.0	NM_010353	14841.0	Mm.42045	NM_010353	ENSMUSG00000050107	Haspin	Gsg2	histone H3 associated protein kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-101896279-2	chr5	101896179	101896379	+	548.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 35 of 66)	intron (NM_172882, intron 35 of 66)	131149.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-72814137-4	chr17	72814053	72814253	+	715.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22475.0	NM_027166	383295.0	Mm.277533	NM_027166	ENSMUSG00000039770	Ypel5	2310076K21Rik|CGI-127	yippee like 5	protein-coding	0.368155251209838	0.109447428114627	0.691063239474094	0.098108119897037	0.244218659833487	0.110885025734592	0.902782194589539	0.0989735389061634	0.327985077444486	0.870993495070375	1
Merged-chr5-149679436-4	chr5	149679281	149679481	+	667.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081204, intron 1 of 14)	intron (NM_001081204, intron 1 of 14)	1124.0	NM_001081204	381694.0	Mm.45060	NM_001081204	ENSMUSG00000051950	B3glct	B3galtl|Gm1057	beta-3-glucosyltransferase	protein-coding	-2.18138529563533	-2.15523716995652	-2.1631445789866	-2.16963996020037	-2.05513010215571	-2.15352360143315	-2.16135451490766	-2.16847729006863	0.759018020146679	0.829933115115583	1
Merged-chr7-27239898-2	chr7	27239798	27239998	+	668.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_133770, exon 6 of 15)	exon (NM_133770, exon 6 of 15)	6885.0	NM_133770	76889.0	Mm.124728	NM_133770	ENSMUSG00000003762	Coq8b	0610012P18Rik|Adck4	coenzyme Q8B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-93487090-4	chr10	93486834	93487034	+	909.5166630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1834.0	NM_010401	15109.0	Mm.13000	NM_010401	ENSMUSG00000020017	Hal	Hsd|his|histidase	histidine ammonia lyase	protein-coding	1.66386988127406	1.4854823318299	1.63392049587661	1.9962754821102	1.80065300643004	1.86538835455879	2.45679175640213	2.20944869447	1.15066168897741	0.237225807081277	0.733808141787246
Merged-chr11-110538402-4	chr11	110538311	110538511	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	59071.0	NM_001356346	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-25875535-4	chr17	25875456	25875656	+	998.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026686)	promoter-TSS (NM_026686)	56.0	NM_026686	68347.0	Mm.35098	NM_026686	ENSMUSG00000025731	Mettl26	0610011F06Rik	methyltransferase like 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-3523655-4	chr13	3523540	3523740	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR33A_|LTR|ERVL	-14435.0	NM_008112	14569.0	Mm.153226	NM_008112	ENSMUSG00000021218	Gdi2	GDI-B|GDIB|Gdi3	guanosine diphosphate (GDP) dissociation inhibitor 2	protein-coding	3.76740719032747	4.89466256992207	4.14124986923536	4.55758733635842	3.36331878523316	3.36364144334174	3.56767618956166	4.57847205776327	-0.762893097327957	0.125980049903979	0.555837940211303
Merged-chr5-93105522-1	chr5	93105422	93105622	+	595.0	f1_balb.idr	intron (NM_001009818, intron 1 of 9)	intron (NM_001009818, intron 1 of 9)	12106.0	NM_001347377	52398.0	Mm.394184	NM_001009818	ENSMUSG00000058013	Sept11	6230410I01Rik|AW548875|D5Ertd606e	septin 11	protein-coding	-0.169132088057443	-0.15929524963239	-0.0141660315790053	0.193833876266755	0.235231834389325	-0.158553506581044	-0.161843847251076	0.0949056301882467	0.436973091599851	0.847515371385311	1
Merged-chr4-3051350-2	chr4	3051251	3051451	+	617.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-120732.0	NM_001167534	100312470.0	Mm.480297	NM_001167534	ENSMUSG00000115072	Vmn1r2	Gm11776	vomeronasal 1 receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-110645571-2	chr7	110645471	110645671	+	738.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17914.0	NM_009627	11535.0	Mm.1408	NM_009627	ENSMUSG00000030790	Adm	AM	adrenomedullin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-103606017-4	chr2	103605915	103606115	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178890, intron 1 of 16)	MIRb|SINE|MIR	39705.0	NM_178890	99382.0	Mm.35850	NM_178890	ENSMUSG00000032724	Abtb2	AW539457|BPOZ-2	ankyrin repeat and BTB (POZ) domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44514289-4	chr9	44514191	44514391	+	977.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007551, exon 2 of 2)	exon (NM_007551, exon 2 of 2)	12130.0	NM_007551	12145.0	Mm.6246	NM_007551	ENSMUSG00000047880	Cxcr5	Blr1|CXC-R5|CXCR-5|Gpcr6|MDR15	chemokine (C-X-C motif) receptor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4265962-2	chr19	4265862	4266062	+	776.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_001356620, exon 7 of 14)	exon (NM_001356620, exon 7 of 14)	-2084.0	NR_105951	102465595.0		NR_105951	ENSMUSG00000099290	Mir6985	Gm27719|mmu-mir-6985	microRNA 6985	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76368929-4	chr15	76368847	76369047	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021555)	promoter-TSS (NM_021555)	49.0	NM_021555	59053.0	Mm.133202	NM_021555	ENSMUSG00000022554	Hgh1	Brp16|D15Ertd741e|Fam203a|MNCb-5873	HGH1 homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-85562686-3	chr17	85562586	85562786	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55710.0	NR_038084	100043902.0	Mm.150838	NR_015385	ENSMUSG00000093460	Six3os1	D17Mgi26|E130112H22Rik|Rncr1|Six3os	SIX homeobox 3, opposite strand 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88831780-2	chr3	88831655	88831855	+	863.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_015498, intron 1 of 1)	intron (NR_015498, intron 1 of 1)	732.0	NR_015498	319830.0	Mm.400394	NR_015498		1500004A13Rik	5430404N14Rik|BB132176	RIKEN cDNA 1500004A13 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95136538-4	chr3	95136427	95136627	+	877.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153121, intron 1 of 2)	intron (NM_153121, intron 1 of 2)	2439.0	NM_153121	217779.0	Mm.341945	NM_153121	ENSMUSG00000053769	Lysmd1	2610022K04Rik|AI415311	LysM, putative peptidoglycan-binding, domain containing 1	protein-coding	2.7041108001951	3.0210982478148	2.59066358396223	3.16685349183032	2.63175696766675	3.04228988485439	2.60989358932719	2.85850035740534	-0.188753588907431	0.779076348311521	0.998431161219273
Merged-chr8-115530208-4	chr8	115530101	115530301	+	970.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	176693.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-100492323-2	chr3	100492223	100492423	+	771.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3131.0	NM_001142952	74645.0	Mm.226900	NM_001142952	ENSMUSG00000044468	Fam46c	4930431B09Rik|AI449797	family with sequence similarity 46, member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81360426-2	chr10	81360326	81360526	+	909.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028657, intron 2 of 9)	intron (NM_028657, intron 2 of 9)	2935.0	NM_028657	73822.0	Mm.182281	NM_028657	ENSMUSG00000034854	Mfsd12	C19orf28|F630110N24Rik|Wdt1|gr	major facilitator superfamily domain containing 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-91035712-3	chr1	91035664	91035864	+	644.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111312, intron 1 of 12)	intron (NM_001111312, intron 1 of 12)	-17680.0	NM_001111311	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-41958847-4	chr10	41958734	41958934	+	952.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034858, intron 10 of 17)	intron (NM_001034858, intron 10 of 17)	59548.0	NM_001034858	213402.0	Mm.211320	NM_001034858	ENSMUSG00000071324	Armc2	2610018I05Rik	armadillo repeat containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-86676850-3	chr4	86676767	86676967	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR34B_MM|LTR|ERVK	-6808.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	1.54200476379291	2.96686985403406	1.28396593572	2.58023042301054	1.83069027371389	1.77403313834446	1.01731277854415	0.989862917363423	-2.05799692927422	0.0715757923809937	0.403316361736757
Merged-chr2-71845374-2	chr2	71845274	71845474	+	657.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_008397, intron 20 of 25)	ORR1A2|LTR|ERVL-MaLR	-27850.0	NM_172665	228026.0	Mm.34411	NM_172665	ENSMUSG00000006494	Pdk1	B830012B01|D530020C15Rik	pyruvate dehydrogenase kinase, isoenzyme 1	protein-coding	-0.356476364334238	-0.00027765924860701	-0.489361833128438	-0.492230238304679	-0.496275053088451	0.00893465027867191	-0.488540917762579	-0.491729497877821	-0.270522364052869	0.917168158447674	1
Merged-chr17-35425803-2	chr17	35425701	35425901	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_023124, exon 3 of 5)	exon (NM_023124, exon 3 of 5)	924.0	NM_207648	110557.0	Mm.439827	NM_207648	ENSMUSG00000073409	H2-Q6	0610037M15Rik|H-2Q6|Qa-6|Qa6	histocompatibility 2, Q region locus 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-91093836-3	chr13	91093748	91093948	+	806.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025770, intron 3 of 7)	intron (NM_025770, intron 3 of 7)	130139.0	NM_025770	66795.0	Mm.235385	NM_025770	ENSMUSG00000021619	Atg10	5330424L23Rik|5430428K15Rik|AI852123|APG10|Agp10|Apg10l|Apg10p|Atg10l	autophagy related 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-61868237-4	chr11	61868122	61868322	+	891.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13130.0	NM_013881	29869.0	Mm.162025	NM_013881	ENSMUSG00000004798	Ulk2	A830085I22Rik|AU015340|Unc51.2|mKIAA0623	unc-51 like kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-135116693-1	chr6	135116593	135116793	+	629.0	f0_balb.idr	exon (NM_001205396, exon 2 of 4)	exon (NM_001205396, exon 2 of 4)	1590.0	NM_053118	93746.0	Mm.49902	NM_053118	ENSMUSG00000030205	Gprc5d	-	G protein-coupled receptor, family C, group 5, member D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-7888595-4	chr10	7888627	7888827	+	886.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52346.0	NR_039563	100628581.0		NR_039563	ENSMUSG00000093060	Mir5104	mir-5104|mmu-mir-5104|mu-mir-5104	microRNA 5104	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-31633310-2	chr18	31633210	31633410	+	867.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1058.0	NM_001357554	269003.0	Mm.194538	NM_172965	ENSMUSG00000024260	Sap130	2610304F09Rik|6720406D06	Sin3A associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81414977-2	chr10	81414877	81415077	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026756, intron 2 of 8)	intron (NM_026756, intron 2 of 8)	1320.0	NR_106141	102465778.0		NR_106141	ENSMUSG00000105379	Mir1191b	mmu-mir-1191b	microRNA 1191b	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-12264915-4	chr13	12264811	12265011	+	833.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6798.0	NM_001081128	238505.0	Mm.40335	NM_001081128	ENSMUSG00000021311	Mtr	AI894170|D830038K18Rik|MS	5-methyltetrahydrofolate-homocysteine methyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-54314256-2	chr3	54314156	54314356	+	556.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253682, intron 8 of 11)	intron (NM_001253682, intron 8 of 11)	-46851.0	NM_001198766	50706.0	Mm.236067	NM_015784	ENSMUSG00000027750	Postn	A630052E07Rik|AI747096|OSF-2|Osf2|PLF|PN	periostin, osteoblast specific factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-120970691-4	chr2	120970577	120970777	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009461)	promoter-TSS (NM_009461)	38.0	NM_009461	22222.0	Mm.389330	NM_009461	ENSMUSG00000027272	Ubr1	AI504731	ubiquitin protein ligase E3 component n-recognin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5423621-2	chr19	5423523	5423723	+	775.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_015545)	TTS (NR_015545)	1356.0	NM_024176	66556.0	Mm.275446	NM_024176	ENSMUSG00000024914	Drap1	2310074H19Rik|NC2-alpha	Dr1 associated protein 1 (negative cofactor 2 alpha)	protein-coding	-1.43172712806865	-1.3992492906874	-1.40907085678131	-1.41713858359971	-0.932192548427885	-1.39712091634321	-1.40684746950024	-1.41569446435649	2.19283191591698	0.528233640655333	1
Merged-chr7-99182844-4	chr7	99182752	99182952	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026384)	promoter-TSS (NM_026384)	-139.0	NM_026384	67800.0	Mm.180189	NM_026384	ENSMUSG00000030747	Dgat2	0610010B06Rik|ARAT|DGAT-2	diacylglycerol O-acyltransferase 2	protein-coding	4.80930161068808	4.013031266802	4.55085456880233	3.1754464925374	4.9577782121057	3.95898015445993	5.35853861709529	4.24634840735302	0.594573435753696	0.213392029662303	0.703038353542171
Merged-chr2-18897213-2	chr2	18897113	18897313	+	592.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008845, intron 3 of 9)	B4A|SINE|B4	-95395.0	NR_131254	66774.0	Mm.87075	NR_131254	ENSMUSG00000097638	Carlr	4933439G12Rik|Carl	cardiac and apoptosis-related long non-coding RNA	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-165724922-1	chr1	165724822	165725022	+	788.333313	f0_balb.idr	Intergenic	Intergenic	-16828.0	NM_178593	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-19614546-4	chr10	19614440	19614640	+	942.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-7488.0	NM_178258	237310.0	Mm.331979	NM_178258	ENSMUSG00000039760	Il22ra2	CRF2-10|CRF2-s1|CRF2X|Il-22bp	interleukin 22 receptor, alpha 2	protein-coding	1.73299825469801	1.62522131701365	1.8821591981534	1.69009526602689	2.14581479384867	2.67115334869646	1.38652590130475	1.35093072407055	0.788508791742605	0.445562218547768	0.913093059349143
Merged-chr17-35312083-2	chr17	35311983	35312183	+	764.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RodERV21-int|LTR|ERV1	-8464.0	NM_010390	15006.0	Mm.466882	NM_010390	ENSMUSG00000079507	H2-Q1	H-2Q1|Q1|Q1b|Q1d|Q1k|Qa-1|Qa1|Qed-1	histocompatibility 2, Q region locus 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64232016-3	chr5	64231903	64232103	+	747.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 1 of 18)	intron (NM_001289514, intron 1 of 18)	1646.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30967705-7	chr2	30967600	30967800	+	962.5714109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_144884, exon 1 of 5)	exon (NM_144884, exon 1 of 5)	218.0	NM_144884	30931.0	Mm.154994	NM_144884	ENSMUSG00000026849	Tor1a	DQ2|Dyt1|torsinA	torsin family 1, member A (torsin A)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-74260197-7	chr13	74260087	74260287	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001317351, intron 2 of 9)	CpG	32144.0	NM_009644	11624.0	Mm.290446	NM_009644	ENSMUSG00000021575	Ahrr	mKIAA1234	aryl-hydrocarbon receptor repressor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-55117948-2	chr11	55117848	55118048	+	828.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger1|DNA|TcMar-Tigger	19963.0	NM_010299	14667.0	Mm.287807	NM_010299	ENSMUSG00000000594	Gm2a	AA408702|AW215435|GM2-AP|SAP-3	GM2 ganglioside activator protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-32466894-2	chr6	32466794	32466994	+	706.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175750, intron 3 of 31)	intron (NM_175750, intron 3 of 31)	-44247.0	NR_040277	319849.0	Mm.440860	NR_040277	ENSMUSG00000086763	Plxna4os1	B230378P21Rik	plexin A4, opposite strand 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107340524-4	chr9	107340404	107340604	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175486)	promoter-TSS (NM_175486)	-136.0	NM_175486	235599.0	Mm.71039	NM_175486	ENSMUSG00000037977	6430571L13Rik	-	RIKEN cDNA 6430571L13 gene	protein-coding	4.49036052016786	3.15673154238317	4.30545439730258	4.70935153163096	5.15443012772384	4.59395118821735	4.39549768774797	5.01136811948052	0.675211684706129	0.110793884140469	0.521003865985499
Merged-chr15-81507319-2	chr15	81507219	81507419	+	852.1666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	41003.0	NM_019712	56438.0	Mm.29405	NM_019712	ENSMUSG00000022400	Rbx1	1500002P15Rik|AA517855|ROC1	ring-box 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-53466742-4	chr11	53466596	53466796	+	951.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027917, intron 7 of 7)	CpG	9491.0	NM_027917	71774.0	Mm.274370	NM_027917	ENSMUSG00000018387	Shroom1	Apx|Shrm1	shroom family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-71811465-4	chr1	71811392	71811592	+	903.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-76620.0	NR_027659	667931.0	Mm.214128	NR_027658	ENSMUSG00000099707	Gm8883	EG667931|Gm554	predicted gene 8883	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-9610159-4	chr3	9610068	9610268	+	897.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133218)	promoter-TSS (NM_133218)	-83.0	NM_133218	170753.0	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-11025095-2	chr8	11024995	11025195	+	938.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_046017, intron 1 of 4)	intron (NR_046017, intron 1 of 4)	-16665.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-91051807-4	chr8	91051728	91051928	+	664.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001310530, exon 38 of 38)	exon (NM_001310530, exon 38 of 38)	-18229.0	NM_001282001	19651.0	Mm.235580	NM_011250	ENSMUSG00000031666	Rbl2	PRB2|RBR-2|Rb2|p130	RB transcriptional corepressor like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-26698746-4	chr8	26698681	26698881	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	125642.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	7.80735000958377	7.97571947012086	8.13530023764696	7.75015742763054	8.12196574013048	8.0702685371442	8.12982630613249	8.12122721411754	0.195463401071891	0.129876291623847	0.564921023139857
Merged-chr11-118143860-2	chr11	118143760	118143960	+	644.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14|LTR|ERV1	-14641.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-11568125-4	chr2	11568033	11568233	+	876.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	-14204.0	NM_001177758	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-143315996-3	chr6	143315899	143316099	+	918.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	70111.0	NR_027803	52285.0	Mm.354898	NM_001033129		D6Ertd474e	1700001I24Rik|AU023129	DNA segment, Chr 6, ERATO Doi 474, expressed	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102371711-2	chr12	102371611	102371811	+	605.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177620, intron 6 of 9)	intron (NM_177620, intron 6 of 9)	68102.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-27919708-4	chr15	27919616	27919816	+	995.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081302, intron 1 of 56)	intron (NM_001081302, intron 1 of 56)	106132.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-125348628-4	chr5	125348533	125348733	+	981.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-7539.0	NM_001205083	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-133133671-4	chr1	133133572	133133772	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133819, intron 1 of 1)	intron (NM_133819, intron 1 of 1)	2506.0	NM_133819	108954.0	Mm.293628	NM_133819	ENSMUSG00000046062	Ppp1r15b	1810033K10Rik|AI606441|C530022L24Rik|CReP	protein phosphatase 1, regulatory (inhibitor) subunit 15b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-84196445-3	chr7	84196340	84196540	+	944.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44547.0	NM_133722	70178.0	Mm.23914	NM_133722	ENSMUSG00000038459	Abhd17c	2210412D01Rik|AL023007|Fam108c|Fam108c1	abhydrolase domain containing 17C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-124441899-2	chr9	124441799	124441999	+	719.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	18112.0	NR_015516	75135.0	Mm.476814	NR_015516		4930526I15Rik	1600027J15Rik	RIKEN cDNA 4930526I15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-77613682-4	chr10	77613575	77613775	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_125903)	promoter-TSS (NR_125903)	-34.0	NR_125903	20610.0	Mm.24433	NM_019929	ENSMUSG00000020265	Sumo3	2810014B19Rik|D10Ertd345e|SMT3A|SUMO-3|Smt3h1	small ubiquitin-like modifier 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-84590887-2	chr12	84590787	84590987	+	705.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301427, intron 3 of 4)	intron (NM_001301427, intron 3 of 4)	21059.0	NM_001301427	12677.0	Mm.4405	NM_007701	ENSMUSG00000021239	Vsx2	Chx10|Hox-10|Hox10|or	visual system homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-86684200-1	chr4	86684100	86684300	+	907.0	f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-14141.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-89143940-2	chr18	89143840	89144040	+	675.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53487.0	NM_178687	225825.0	Mm.139293	NM_178687	ENSMUSG00000034028	Cd226	BC051526|DNAM-1|DNAM1|Pta1|TLiSA1	CD226 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-164444600-4	chr2	164444476	164444676	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1388.0	NM_011521	20971.0	Mm.3815	NM_011521	ENSMUSG00000017009	Sdc4	AA959608|AW108331|S4|Synd4|ryudocan|syndecan-4	syndecan 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-53923405-2	chr10	53923305	53923505	+	649.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008548, intron 9 of 12)	Lx4B|LINE|L1	152391.0	NM_008548	17155.0	Mm.117294	NM_008548	ENSMUSG00000003746	Man1a	Man1a1|PCR1	mannosidase 1, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-48872907-2	chr11	48872807	48873007	+	677.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1487.0	NM_008326	15944.0	Mm.29938	NM_008326	ENSMUSG00000046879	Irgm1	Ifggd3|Ifi1|Iigp3|Iipg3|Irgm	immunity-related GTPase family M member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-53273583-4	chr19	53273454	53273654	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME4b|LINE|L1	-18349.0	NR_036590	69319.0	Mm.57452	NR_036590		1700001K23Rik	-	RIKEN cDNA 1700001K23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-146329057-2	chr3	146328957	146329157	+	620.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	49887.0	NR_033542	100038607.0	Mm.365888	NR_033542	ENSMUSG00000105602	Gm10636	-	predicted gene 10636	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133672591-4	chr4	133672499	133672699	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145956)	promoter-TSS (NM_001145956)	48.0	NM_001145955	230801.0	Mm.217004	NM_178698	ENSMUSG00000043257	Pigv	B330013B03|D430024F16Rik	phosphatidylinositol glycan anchor biosynthesis, class V	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97557144-4	chr11	97557047	97557247	+	899.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018873, intron 1 of 19)	intron (NM_018873, intron 1 of 19)	17979.0	NM_018873	56013.0	Mm.342665	NM_018873	ENSMUSG00000038453	Srcin1	P140|SNIP|mKIAA1684|p140Cap	SRC kinase signaling inhibitor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-99187001-4	chr11	99186896	99187096	+	981.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31919.0	NM_007719	12775.0	Mm.2932	NM_007719	ENSMUSG00000037944	Ccr7	CC-CKR-7|CCR-7|CD197|Cdw197|Cmkbr7|EBI1|Ebi1h	chemokine (C-C motif) receptor 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-107473311-4	chr11	107473213	107473413	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2593.0	NM_145823	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-91282750-3	chr1	91282648	91282848	+	875.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355764, intron 9 of 10)	intron (NM_001355764, intron 9 of 10)	-15590.0	NM_016717	50880.0	Mm.25724	NM_016717	ENSMUSG00000026307	Scly	9830169H08|A930015N15Rik|SCL|Scly1|Scly2	selenocysteine lyase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-55687708-4	chr16	55687605	55687805	+	909.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	134433.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-119781735-2	chr8	119781635	119781835	+	740.125	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A2|LTR|ERVL-MaLR	-3319.0	NM_028883	74347.0	Mm.358759	NM_028883	ENSMUSG00000034105	Tldc1	4632415K11Rik|Kiaa1609	TBC/LysM associated domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-128706732-4	chr4	128706615	128706815	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018774, intron 2 of 14)	intron (NM_018774, intron 2 of 14)	17977.0	NM_018774	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-138844908-2	chr7	138844808	138845008	+	589.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001045483, intron 1 of 1)	intron (NM_001045483, intron 1 of 1)	1359.0	NM_001045483	69546.0	Mm.31598	NM_027115	ENSMUSG00000041775	Mapk1ip1	2310009E07Rik|AU043776|MISS	mitogen-activated protein kinase 1 interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-50818293-4	chr9	50818214	50818414	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045601, intron 12 of 13)	intron (NR_045601, intron 12 of 13)	-38610.0	NM_001034085	73699.0	Mm.7726	NM_028614	ENSMUSG00000032058	Ppp2r1b	2410091N08Rik|AI790395	protein phosphatase 2, regulatory subunit A, beta	protein-coding	4.36803888135029	4.17179415597719	4.6969992807385	3.00684875876848	4.23468026142972	3.71566980490659	4.87942617131182	3.80457953542979	0.0690464779699474	0.890623604346961	0.998431161219273
Merged-chr4-66822698-4	chr4	66822612	66822812	+	938.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4839.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	3.24901659972551	3.85773915211404	2.9239167223673	2.70624830986937	3.19799557536454	3.66429093862756	3.88801121143521	3.58579698254547	0.543096380309854	0.344712359536345	0.845794803766071
Merged-chr14-70174853-2	chr14	70174753	70174953	+	557.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145978, intron 2 of 9)	intron (NM_145978, intron 2 of 9)	1962.0	NM_001253736	213019.0	Mm.283968	NM_145978	ENSMUSG00000022090	Pdlim2	4732462F18Rik|Slim	PDZ and LIM domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-106308763-4	chr9	106308646	106308846	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027354, intron 9 of 10)	intron (NM_027354, intron 9 of 10)	27685.0	NM_027354	70235.0	Mm.23054	NM_027354	ENSMUSG00000023345	Poc1a	2510040D07Rik|Wdr51a|cha	POC1 centriolar protein A	protein-coding	4.9875679855403	4.73291982950611	4.39173652032926	3.91229807358138	3.98983609327584	4.66826411188979	3.9836512807934	4.18587949754383	-0.436415471019176	0.29986394229974	0.801244565215384
Merged-chr14-66225785-3	chr14	66225725	66225925	+	847.861084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	-12001.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	-0.237547753218208	-0.0354546853824082	-0.228587457692761	0.46784711989763	-0.094403122535176	-0.223218942370433	-0.227622231249959	0.0687181565330916	-1.29216667369186	0.571944024484328	1
Merged-chr1-131062178-1	chr1	131062078	131062278	+	598.0	f1_c57bl6.idr	intron (NM_008551, intron 1 of 9)	intron (NM_008551, intron 1 of 9)	35665.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-160360645-4	chr2	160360539	160360739	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6426.0	NM_010658	16658.0	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-11352533-4	chr18	11352416	11352616	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-280760.0	NM_001252495	225182.0	Mm.154275	NM_175458	ENSMUSG00000041238	Rbbp8	9930104E21Rik|CtIP|RBBP-8|RIM|SAE2	retinoblastoma binding protein 8, endonuclease	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-76763051-2	chr14	76762954	76763154	+	730.5	f0_balb.idr|f1_balb.idr	TTS (NR_153763)	TTS (NR_153763)	2923.0	NR_153763	73883.0	Mm.489041	NR_153763		4930431P22Rik	-	RIKEN cDNA 4930431P22 gene	ncRNA	1.50468245848147	2.46098854893096	1.35660544606623	2.30053968312379	3.60474980334743	2.7366437314441	2.39230744817312	2.9243450714018	2.07166419087979	0.0164122989526817	0.154662920913789
Merged-chr2-6690349-2	chr2	6690249	6690449	+	683.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110232, intron 4 of 15)	intron (NM_001110232, intron 4 of 15)	31313.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127080271-4	chr7	127080188	127080388	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-11148.0	NM_178901	101602.0	Mm.490357	NM_178901	ENSMUSG00000045165	AI467606	-	expressed sequence AI467606	protein-coding	6.11941328466469	6.24104604865893	7.02961076907329	6.58265362118168	5.72508318713604	4.48770096889438	6.16912097552795	5.99877698866152	-0.879413286164182	0.00437635721736613	0.0603072747633524
Merged-chr1-131942991-4	chr1	131942860	131943060	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19955.0	NM_001177628	212980.0	Mm.200307	NM_145977	ENSMUSG00000026435	Slc45a3	2210413P12Rik|AU023994|AU043764|IPCA-6|PRST|Pcanap6	solute carrier family 45, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-98319929-3	chr5	98319797	98319997	+	963.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9407.0	NM_001024614	75784.0	Mm.443240	NM_001024614	ENSMUSG00000057816	1700007G11Rik	4930428O21Rik	RIKEN cDNA 1700007G11 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-140940361-2	chr7	140940261	140940461	+	576.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1030.0	NR_153832	212974.0	Mm.260139	NM_145387	ENSMUSG00000062031	Pgghg	5730511L01Rik|Athl1|BC023151	protein glucosylgalactosylhydroxylysine glucosidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81634912-2	chr10	81634812	81635012	+	579.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_027480, exon 3 of 20)	exon (NM_027480, exon 3 of 20)	6372.0	NM_027480	70615.0	Mm.304382	NM_027480	ENSMUSG00000054708	Ankrd24	4631433D01Rik|5730519E19Rik|D10Bur2e	ankyrin repeat domain 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-29808740-4	chr11	29808653	29808853	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146016, intron 17 of 41)	intron (NM_146016, intron 17 of 41)	16915.0	NM_176829	216622.0	Mm.443260	NM_176829	ENSMUSG00000078157	4931440F15Rik	Fem1ab	RIKEN cDNA 4931440F15 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-145239444-4	chr4	145239323	145239523	+	893.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011610, intron 1 of 9)	intron (NM_011610, intron 1 of 9)	7447.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115491274-2	chr5	115491189	115491389	+	775.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur2|SINE|Alu	-6805.0	NM_133760	75387.0	Mm.332616	NM_133760	ENSMUSG00000029524	Sirt4	4930596O17Rik	sirtuin 4	protein-coding	1.56004284083274	1.132644249858	1.94792795778389	1.77343742953834	2.08139970232192	2.03458320790655	1.11581786127645	2.19240510895641	0.829158794214363	0.462950301545706	0.921412612820757
Merged-chr17-35254903-4	chr17	35254806	35255006	+	977.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	3617.0	NR_106169	102465886.0		NR_106169	ENSMUSG00000098269	Mir8094	Gm27513|mmu-mir-8094	microRNA 8094	ncRNA	-1.84354474832578	-1.81325489144778	-1.53416061964661	-1.82993901100912	-1.8414184563789	-1.81126990231468	-1.82034119297928	-1.82859217979378	-1.52252619601533	0.665276690233728	1
Merged-chr11-50931049-2	chr11	50930949	50931149	+	880.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013744, intron 1 of 4)	intron (NM_013744, intron 1 of 4)	586.0	NM_013744	27274.0	Mm.74670	NM_013744	ENSMUSG00000020335	Zfp354b	Kid2|Tcf17l1|Znf354b	zinc finger protein 354B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67311609-4	chr10	67311496	67311696	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26315.0	NM_001036293	641340.0	Mm.136223	NM_001036293	ENSMUSG00000075000	Nrbf2	NRBF-2	nuclear receptor binding factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90496497-3	chr2	90496388	90496588	+	906.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	-17314.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.527752843056116	0.556832086453271	1.35751922321596	0.5400372508262	0.944725578283267	0.770002929712275	1.04597579095708	1.22312506807712	0.920840346668186	0.571227732930157	1
Merged-chr10-111508786-2	chr10	111508686	111508886	+	560.416626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_009344)	TTS (NM_009344)	2500.0	NM_009344	21664.0	Mm.3117	NM_009344	ENSMUSG00000020205	Phlda1	DT1P1B11|TDAG51|Tdag	pleckstrin homology like domain, family A, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-37693781-2	chr13	37693681	37693881	+	552.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-132257.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34301409-2	chr17	34301329	34301529	+	883.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4438.0	NM_010382	14969.0	Mm.22564	NM_010382	ENSMUSG00000060586	H2-Eb1	Eb|H-2Eb|H2Eb|Ia-4|Ia4	histocompatibility 2, class II antigen E beta	protein-coding	1.6468553155447	1.63418106245213	1.55231665409731	3.85245132506454	4.56392879322127	4.51282145481441	4.11532474776366	4.91179277540655	2.8157551365008	0.0425997353795873	0.295896347983957
Merged-chr7-30353590-4	chr7	30353527	30353727	+	846.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9145.0	NM_175478	233067.0	Mm.23157	NM_175478	ENSMUSG00000036957	Lrfn3	A530045B06Rik|SALM4	leucine rich repeat and fibronectin type III domain containing 3	protein-coding	3.22952196259258	1.65873865655983	3.27053893055402	2.04952101949585	3.38048039056336	3.3199595176068	3.29598475075449	3.54519447675676	1.07537911005538	0.132884668856961	0.570633592321337
Merged-chr16-11009132-2	chr16	11009032	11009232	+	918.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_040518, intron 1 of 2)	intron (NR_040518, intron 1 of 2)	234.0	NR_040518	100043147.0	Mm.489001	NR_040518	ENSMUSG00000097056	Gm4262	-	predicted gene 4262	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-21440018-1	chr5	21439918	21440118	+	552.0	f1_c57bl6.idr	intron (NM_177869, intron 4 of 7)	intron (NM_177869, intron 4 of 7)	15115.0	NM_177869	330050.0	Mm.40655	NM_177869	ENSMUSG00000047221	Fam185a	4631428I10|AI847670	family with sequence similarity 185, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-146222808-3	chr6	146222698	146222898	+	997.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019923, intron 45 of 56)	intron (NM_019923, intron 45 of 56)	279425.0	NM_010586	16439.0	Mm.7800	NM_010586	ENSMUSG00000030287	Itpr2	AI649341|InsP3R-2|InsP3R-5|Ip3r2|Itpr5|insP3R2	inositol 1,4,5-triphosphate receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-35166031-4	chr4	35165940	35166140	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-8556.0	NM_178061	214944.0	Mm.32968	NM_178061	ENSMUSG00000073910	Mob3b	8430436F23Rik|A430018A01Rik|Mobkl2b	MOB kinase activator 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-155068165-4	chr4	155068070	155068270	+	985.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042407, intron 2 of 5)	intron (NM_001042407, intron 2 of 5)	1140.0	NM_001042407	668173.0	Mm.133114	NM_001042407	ENSMUSG00000029047	Pex10	AV128229|Gm142	peroxisomal biogenesis factor 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44939611-2	chr7	44939523	44939723	+	599.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR18B_MM|LTR|ERVK	-3617.0	NM_001077591	22116.0	Mm.84502	NM_011651	ENSMUSG00000059891	Tsks	Stk22s1|Tssks1	testis-specific serine kinase substrate	protein-coding	0.154021345531612	0.951172316523699	0.169560659753418	0.163749945504522	0.862602065831115	0.71924257307736	0.171215217360716	0.164767677511484	0.56656915738523	0.786357470758088	1
Merged-chr6-33501243-3	chr6	33501160	33501360	+	823.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009148, intron 9 of 17)	intron (NM_009148, intron 9 of 17)	252132.0	NM_001347089	20336.0	Mm.265512	NM_009148	ENSMUSG00000029763	Exoc4	C78892|Sec8|Sec8l1	exocyst complex component 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-126500724-4	chr2	126500617	126500817	+	870.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359975)	promoter-TSS (NM_001359975)	-870.0	NM_001359975	241633.0	Mm.222235	NM_001080944	ENSMUSG00000060131	Atp8b4	Im	ATPase, class I, type 8B, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-54463269-4	chr14	54463158	54463358	+	923.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022993)	promoter-TSS (NM_022993)	-889.0	NM_022993	65107.0	Mm.472719	NM_022993	ENSMUSG00000022175	Lrp10	Lrp9	low-density lipoprotein receptor-related protein 10	protein-coding	2.16435807547165	1.72088929168894	0.801174868700406	0.786903166182174	0.966810614074946	1.73622342491857	1.04265738290104	1.19532578375767	-0.815127509989177	0.546980920012248	0.957629043069512
Merged-chr15-50838701-2	chr15	50838601	50838801	+	721.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310481, intron 2 of 5)	intron (NM_001310481, intron 2 of 5)	50348.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28446078-1	chr7	28445978	28446178	+	1000.0	f1_balb.idr	intron (NM_001039192, intron 6 of 6)	intron (NM_001039192, intron 6 of 6)	5141.0	NM_001039192	63986.0	Mm.194536	NM_022024	ENSMUSG00000060791	Gmfg	0610039G16Rik|2310057N07Rik|AI324845	glia maturation factor, gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-82195130-3	chr12	82195033	82195233	+	599.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167983, intron 1 of 23)	intron (NM_001167983, intron 1 of 23)	25117.0	NM_001167983	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-59762830-3	chr1	59762708	59762908	+	874.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1471.0	NM_007561	12168.0	Mm.7106	NM_007561	ENSMUSG00000067336	Bmpr2	2610024H22Rik|AL117858|AW546137|BB189135|BMP-2|BMPR-2|BMPR-II|BMPRII|BRK-3|Gm20272	bone morphogenetic protein receptor, type II (serine/threonine kinase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-170545561-4	chr1	170545457	170545657	+	923.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109985, intron 1 of 9)	L1MC4|LINE|L1	11553.0	NM_027528	70729.0	Mm.409310	NM_027528	ENSMUSG00000038473	Nos1ap	6330408P19Rik|Capon	nitric oxide synthase 1 (neuronal) adaptor protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-83616439-4	chr7	83616333	83616533	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177695, intron 18 of 22)	intron (NM_177695, intron 18 of 22)	-15584.0	NM_023377	170460.0	Mm.357953	NM_023377	ENSMUSG00000046027	Stard5	2310058G22Rik|AI607880|D7Ertd152e	StAR-related lipid transfer (START) domain containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-29561035-3	chr16	29560949	29561149	+	825.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16185.0	NM_001164613	224079.0	Mm.54954	NM_172613	ENSMUSG00000038094	Atp13a4	4631413J11Rik|4832416L12|9330174J19Rik	ATPase type 13A4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-143917314-2	chr1	143917214	143917414	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	86835.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-113487232-4	chr13	113487127	113487327	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045501, intron 1 of 6)	intron (NR_045501, intron 1 of 6)	15617.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191878961-1	chr1	191878861	191879061	+	805.0	f1_balb.idr	Intergenic	MIR|SINE|MIR	-27820.0	NM_009579	22782.0	Mm.9024	NM_009579	ENSMUSG00000037434	Slc30a1	AI839647|C130040I11Rik|Znt1	solute carrier family 30 (zinc transporter), member 1	protein-coding	1.6486175701789	2.13799136368531	1.17167036377541	1.15019257075965	2.49489474617729	2.01860736096853	2.07949744344727	2.40457120343595	1.83960146499487	0.0818677007846262	0.437462295433764
Merged-chr5-72793812-3	chr5	72793727	72793927	+	937.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013689, intron 3 of 17)	intron (NM_013689, intron 3 of 17)	-41050.0	NM_001122754	22165.0	Mm.3264	NM_013698	ENSMUSG00000054892	Txk	A130089B16Rik|Btkl|PTK-RL-18|PTK4|Rlk	TXK tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-25605588-4	chr15	25605531	25605731	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16919.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64381017-4	chr5	64380936	64381136	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TC)n|Simple_repeat|Simple_repeat	86906.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	5.16829042255654	6.37784100439248	5.00622064074773	5.9141574644265	5.20605228041073	6.41372726349936	5.0007078926447	5.93839334923374	0.0300357269853062	0.934363910756755	0.998431161219273
Merged-chr19-25050950-1	chr19	25050850	25051050	+	556.0	f0_balb.idr	intron (NM_028785, intron 1 of 47)	intron (NM_028785, intron 1 of 47)	51421.0	NM_028785	76088.0	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	0.723100168075236	0.577269093785087	0.563085577944662	1.70324693566117	1.03017373386768	0.580419917665223	1.78846979993275	0.770134071816709	0.48042210135549	0.758214848407966	0.998431161219273
Merged-chr8-85025615-4	chr8	85025497	85025697	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357202)	promoter-TSS (NM_001357202)	-310.0	NM_001357202	56495.0	Mm.41475	NM_019652	ENSMUSG00000052456	Asna1	1810048H22Rik|ArsA	arsA arsenite transporter, ATP-binding, homolog 1 (bacterial)	protein-coding	6.47715532505313	6.56087378309693	6.58396040911554	6.68443062870955	6.02462297527542	6.19356113320412	6.00561512457548	5.59489128507652	-0.662512471961361	0.00187192401337413	0.0317521361627655
Merged-chr14-31432843-3	chr14	31432864	31433064	+	724.56665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011894, intron 2 of 8)	intron (NM_011894, intron 2 of 8)	3136.0	NM_011894	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-59912924-4	chr1	59912821	59913021	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001037725)	promoter-TSS (NM_001037725)	-85.0	NM_001037725	72750.0	Mm.258250	NM_001037725	ENSMUSG00000041040	Fam117b	2810425F24Rik|6330416D14Rik|Als2cr13	family with sequence similarity 117, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-45410284-4	chr8	45410182	45410382	+	964.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357316)	promoter-TSS (NM_001357316)	98.0	NM_001357316	142980.0	Mm.33874	NM_126166	ENSMUSG00000031639	Tlr3	AI957183	toll-like receptor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126582065-1	chr8	126581965	126582165	+	590.0	f1_balb.idr	Intergenic	Intergenic	11371.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-3182008-1	chr11	3181908	3182108	+	1000.0	f1_balb.idr	intron (NM_030207, intron 4 of 32)	intron (NM_030207, intron 4 of 32)	11455.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166513224-2	chr2	166513124	166513324	+	678.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51298.0	NR_152154	433503.0	Mm.491336	NR_152154		Gm29679	-	predicted gene, 29679	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-184610477-3	chr1	184610375	184610575	+	696.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52784.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-92053235-4	chr13	92053094	92053294	+	902.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65152.0	NM_009027	19418.0	Mm.248630	NM_009027	ENSMUSG00000021708	Rasgrf2	6330417G04Rik|AW048350|Grf2|Ras-GRF2	RAS protein-specific guanine nucleotide-releasing factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-92301226-4	chr16	92301130	92301330	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138743)	promoter-TSS (NM_138743)	-73.0	NM_138743	68936.0	Mm.21698	NM_138743	ENSMUSG00000051989	Smim11	1190017O12Rik|C21orf51|Fam165b|Smim11a	small integral membrane protein 11	protein-coding	4.52635379457575	5.01422073586656	4.46892743590444	3.9318293693713	4.56044813379705	4.83863165100301	4.86100415801892	3.54260573888963	0.00657293307063891	0.987800820869891	0.998431161219273
Merged-chr7-110891699-4	chr7	110891650	110891850	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194464, intron 15 of 20)	L1MEd|LINE|L1	-13235.0	NR_045267	100504184.0	Mm.441327	NR_045267	ENSMUSG00000087160	Gm16336	-	predicted gene 16336	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-136357417-1	chr4	136357317	136357517	+	661.333313	f1_balb.idr	Intergenic	Intergenic	45819.0	NM_001355182	74326.0	Mm.31051	NM_028871	ENSMUSG00000066037	Hnrnpr	2610003J05Rik|2610528B01Rik|Hnrpr	heterogeneous nuclear ribonucleoprotein R	protein-coding	-0.0497624701180168	-0.0271826772438238	0.610710216759883	-0.0401898608722084	-0.0483290776668499	0.999879261305173	-0.0328735655243679	0.154708389556661	1.17599516933548	0.590012322543807	1
Merged-chr17-28294592-4	chr17	28294496	28294696	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011145, intron 3 of 7)	intron (NM_011145, intron 3 of 7)	-18934.0	NR_028297	72775.0	Mm.201859	NM_028348	ENSMUSG00000007570	Fance	2810451D06Rik|AI415634|AW209126	Fanconi anemia, complementation group E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-20302404-4	chr16	20302276	20302476	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001005767)	promoter-TSS (NM_001005767)	-14.0	NM_001005767	381038.0	Mm.371737	NM_001005767	ENSMUSG00000033918	Parl	D16Ertd607e|PRO2207|PSARL1|PSENIP2|Psarl	presenilin associated, rhomboid-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91487075-2	chr2	91486975	91487175	+	969.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_172668, exon 19 of 38)	exon (NM_172668, exon 19 of 38)	29544.0	NM_001145857	228357.0	Mm.275149	NM_172668	ENSMUSG00000027253	Lrp4	6430526J12Rik|D230026E03|Megf7|mdig	low density lipoprotein receptor-related protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-150583970-2	chr5	150583870	150584070	+	819.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133898, intron 1 of 4)	intron (NM_133898, intron 1 of 4)	10555.0	NM_133898	100637.0	Mm.279932	NM_133898	ENSMUSG00000041132	N4bp2l1	2410024N18Rik|AI428195|B230342M21Rik	NEDD4 binding protein 2-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133967315-4	chr4	133967232	133967432	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016957, intron 1 of 5)	CpG	659.0	NM_016957	15331.0	Mm.319660	NM_016957	ENSMUSG00000003038	Hmgn2	HMG-17|Hmg17	high mobility group nucleosomal binding domain 2	protein-coding	5.34977836394419	5.12661642299589	6.08608104235455	5.43836750555144	5.48054954014412	5.49867874989541	5.71324331592547	6.34633978228189	0.292884959165687	0.337081525985065	0.83703930093451
Merged-chr5-137553550-2	chr5	137553450	137553650	+	756.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031404)	promoter-TSS (NM_031404)	-5.0	NM_031404	83766.0	Mm.31646	NM_031404	ENSMUSG00000029712	Actl6b	Actl6|ArpNa|Baf53b	actin-like 6B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135271286-2	chr4	135271186	135271386	+	798.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_013885, intron 1 of 5)	intron (NM_013885, intron 1 of 5)	1474.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-3829095-2	chr3	3828995	3829195	+	919.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	321065.0	NM_013920	30942.0	Mm.330897	NM_013920	ENSMUSG00000017688	Hnf4g	NR2A2	hepatocyte nuclear factor 4, gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-59770346-4	chr13	59770245	59770445	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026921)	promoter-TSS (NM_026921)	379.0	NR_015349	13996.0	Mm.490435	NR_015349		Etohd2	AW491659	ethanol decreased 2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-30888682-2	chr13	30888582	30888782	+	734.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_025588, intron 11 of 27)	intron (NM_025588, intron 11 of 27)	59079.0	NM_153072	210554.0	Mm.450571	NM_153072	ENSMUSG00000076430	Hus1b	-	HUS1 checkpoint clamp component B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-69386712-2	chr17	69386612	69386812	+	916.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009547, intron 2 of 2)	intron (NM_009547, intron 2 of 2)	2908.0	NM_009547	22666.0	Mm.29434	NM_009547	ENSMUSG00000049672	Zbtb14	ZF5|Zfp161|b2b1982Clo	zinc finger and BTB domain containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-137109777-2	chr2	137109677	137109877	+	643.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013822, intron 2 of 25)	intron (NM_013822, intron 2 of 25)	6743.0	NM_013822	16449.0	Mm.22398	NM_013822	ENSMUSG00000027276	Jag1	ABE2|Gsfabe2|Htu|Ozz|Ser-1	jagged 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116424257-4	chr11	116424161	116424361	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9833.0	NM_176902	319370.0	Mm.258466	NM_176902	ENSMUSG00000050628	Ubald2	1110014K08Rik|D030012E24Rik|Fam100b	UBA-like domain containing 2	protein-coding	5.91350482283162	6.13253068373562	5.69344724497742	5.93113352169953	5.88582922751871	5.64329334838752	4.88505401300552	6.23231216092849	-0.194312234925406	0.498527573035323	0.937147532914443
Merged-chr4-10977191-4	chr4	10977110	10977310	+	884.2291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30409.0	NM_175175	71801.0	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	0.887433977540766	0.706659786464104	0.528945389315015	0.511810445168642	0.346652002255934	0.849889852131383	0.360027217021202	0.651372667942124	-0.619756924037281	0.714238640612737	1
Merged-chr13-81342842-2	chr13	81342742	81342942	+	578.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 83 of 89)	intron (NM_054053, intron 83 of 89)	290302.0	NM_054053	110789.0	Mm.288694	NM_054053	ENSMUSG00000069170	Adgrv1	Frings|Gpr98|Mass1|Mgr1|VLGR1	adhesion G protein-coupled receptor V1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152533959-4	chr1	152533875	152534075	+	878.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 12 of 17)	intron (NM_016846, intron 12 of 17)	91242.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116088656-2	chr11	116088482	116088682	+	615.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-1587.0	NM_001347642	22378.0	Mm.284792	NM_016852	ENSMUSG00000034341	Wbp2	-	WW domain binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-77045505-1	chr13	77045405	77045605	+	683.0	f0_balb.idr	intron (NM_134071, intron 20 of 20)	intron (NM_134071, intron 20 of 20)	89963.0	NM_134071	105377.0	Mm.209730	NM_134071	ENSMUSG00000021597	Slf1	2700017A04Rik|AW545819|Ankrd32|Brctd1|Brctx|C730024G01Rik	SMC5-SMC6 complex localization factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150472718-3	chr4	150472620	150472820	+	962.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 6 of 22)	intron (NM_001085492, intron 6 of 22)	179454.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-17624350-4	chr10	17624258	17624458	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-98870.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	2.1268731560896	2.67007206755709	2.4525462586771	2.71602619717766	2.59679859494232	1.52897308459122	3.42178449353692	2.98909390361225	0.59024886646579	0.471542765030166	0.926125823511231
Merged-chr5-74070837-2	chr5	74070688	74070888	+	620.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	-2377.0	NM_177561	69727.0	Mm.48795	NM_177561	ENSMUSG00000054814	Usp46	1190009E20Rik|2410018I08Rik|AI451644	ubiquitin specific peptidase 46	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-180126344-3	chr2	180126238	180126438	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144500, intron 1 of 13)	intron (NM_144500, intron 1 of 13)	6972.0	NM_144500	228983.0	Mm.253578	NM_144500	ENSMUSG00000039050	Osbpl2	C130070J12Rik|ORP-2|Orp2|mKIAA0772	oxysterol binding protein-like 2	protein-coding	1.69621519079584	2.27562915287785	1.62149357579755	2.86452007616943	2.94143589412798	2.29338144015488	1.63379431836433	3.41537820790137	1.05754812660942	0.242467359976847	0.739482304271025
Merged-chr8-105328268-2	chr8	105328168	105328368	+	744.833313	f1_balb.idr|f1_c57bl6.idr	TTS (NM_177699)	TTS (NM_177699)	1904.0	NM_025486	66320.0	Mm.29990	NM_025486	ENSMUSG00000014856	Tmem208	1700006C06Rik|2610030K20Rik|Hspc171	transmembrane protein 208	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-13901872-4	chr14	13901773	13901973	+	869.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	59440.0	NM_001285780	66231.0	Mm.295875	NM_025435	ENSMUSG00000053453	Thoc7	Nif3l1bp1	THO complex 7	protein-coding	-1.84362945061595	-1.81329140012928	-1.67810947190254	-1.83000206547234	-1.84149977556685	-1.81130325271815	-1.67603257143677	-1.82865309133977	0.037684011990387	0.991491645451152	1
Merged-chr17-27327725-2	chr17	27327625	27327825	+	544.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_106075)	promoter-TSS (NR_106075)	-660.0	NR_106075	102466818.0		NR_106075	ENSMUSG00000099237	Mir7216	Gm27555|mmu-mir-7216	microRNA 7216	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-32939843-3	chr19	32939716	32939916	+	884.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	182239.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-34761163-2	chr5	34761063	34761263	+	969.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010414)	promoter-TSS (NM_010414)	-577.0	NM_010414	15194.0	Mm.209071	NM_010414	ENSMUSG00000029104	Htt	AI256365|C430023I11Rik|Hd|Hdh|IT15	huntingtin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-98257627-2	chr12	98257527	98257727	+	803.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008079, intron 1 of 16)	intron (NM_008079, intron 1 of 16)	1832.0	NM_008079	14420.0	Mm.5120	NM_008079	ENSMUSG00000021003	Galc	2310068B06Rik|A930008M05Rik|AW212969|AW413532|Gacy|twi|twitcher	galactosylceramidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-145026925-4	chr7	145026832	145027032	+	877.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-87007.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	0.523577118384313	1.64561575672147	0.775131584404526	1.50999009612321	1.42114006843029	0.568590447609252	0.555150347558541	0.543442316294593	-1.4194618261531	0.393977425021216	0.88244078632319
Merged-chr2-59127913-3	chr2	59127821	59128021	+	629.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362394, intron 1 of 13)	intron (NM_001362394, intron 1 of 13)	32762.0	NM_001362393	227933.0	Mm.330234	NM_177650	ENSMUSG00000036641	Ccdc148	5830402J09|Gm38473	coiled-coil domain containing 148	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-99244830-2	chr5	99244730	99244930	+	959.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_181318, intron 1 of 13)	intron (NM_181318, intron 1 of 13)	8097.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27715403-4	chr2	27715300	27715500	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290482, intron 1 of 9)	intron (NM_001290482, intron 1 of 9)	4817.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-13933757-2	chr14	13933657	13933857	+	738.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR1B-int|LTR|ERV1	27556.0	NM_001285780	66231.0	Mm.295875	NM_025435	ENSMUSG00000053453	Thoc7	Nif3l1bp1	THO complex 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-62605692-2	chr11	62605592	62605792	+	730.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_030738)	TTS (NR_030738)	1162.0	NR_028541	100217444.0		NR_028541		Snord65	MBII-135|snoRNA135	small nucleolar RNA, C/D box 65	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132273022-2	chr4	132272922	132273122	+	639.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-1353.0	NM_025579	66464.0	Mm.331926	NM_025579	ENSMUSG00000028899	Taf12	20kDa|2810422D08Rik|AW557038|Taf2J	TATA-box binding protein associated factor 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-95107025-2	chr11	95106925	95107125	+	756.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13092.0	NM_010055	13393.0	Mm.5194	NM_010055	ENSMUSG00000001510	Dlx3	AV237891|Dlx-3	distal-less homeobox 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-148907825-2	chr5	148907725	148907925	+	993.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153572, intron 3 of 10)	intron (NM_153572, intron 3 of 10)	20822.0	NM_153572	231912.0	Mm.397405	NM_153572	ENSMUSG00000041298	Katnal1	-	katanin p60 subunit A-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135459719-3	chr5	135459660	135459860	+	774.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146001, intron 2 of 30)	intron (NM_146001, intron 2 of 30)	-65214.0	NM_148932	107939.0	Mm.28399	NM_148932	ENSMUSG00000053293	Pom121	2610027A18Rik|C80273|mKIAA0618	nuclear pore membrane protein 121	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-83095030-4	chr10	83094929	83095129	+	893.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021439, intron 2 of 2)	MIRb|SINE|MIR	109532.0	NM_021439	58250.0	Mm.360747	NM_021439	ENSMUSG00000034612	Chst11	1110020P09Rik|C4ST|C4ST-1|C4ST1|C4s	carbohydrate sulfotransferase 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-65127447-2	chr6	65127347	65127547	+	729.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019455, intron 4 of 5)	intron (NM_019455, intron 4 of 5)	17283.0	NM_019455	54486.0	Mm.410688	NM_019455	ENSMUSG00000029919	Hpgds	H-PGDS|Ptgds2	hematopoietic prostaglandin D synthase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120348516-4	chr11	120348423	120348623	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_038126)	promoter-TSS (NR_038126)	-28.0	NM_009609	11465.0	Mm.196173	NM_009609	ENSMUSG00000062825	Actg1	AL023024|Actg|Actl|E51	actin, gamma, cytoplasmic 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-31527668-2	chr15	31527568	31527768	+	626.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172606, intron 1 of 25)	B3|SINE|B2	3369.0	NM_172606	223455.0	Mm.272185	NM_172606	ENSMUSG00000039100	March6	3830408G03|F830029L24Rik|mKIAA0597	membrane-associated ring finger (C3HC4) 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-97951301-4	chr3	97951182	97951382	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033779, intron 1 of 1)	L1_Mur3|LINE|L1	21109.0	NM_001033779	433632.0	Mm.212421	NM_001033779		Gm5544	EG433632	predicted gene 5544	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65382274-2	chr9	65382174	65382374	+	924.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9378.0	NM_028974	74492.0	Mm.159223	NM_028974	ENSMUSG00000054978	Kbtbd13	5430433E21Rik	kelch repeat and BTB (POZ) domain containing 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-96998305-6	chr5	96998140	96998340	+	985.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080708, intron 1 of 15)	intron (NM_080708, intron 1 of 15)	551.0	NM_080708	140780.0	Mm.281490	NM_080708	ENSMUSG00000034663	Bmp2k	4933417M22Rik|AA673486|AV128808|BIKE	BMP2 inducible kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-7399162-3	chr17	7399067	7399267	+	989.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTRIS_Mus|LTR|ERV1	-13862.0	NM_001142539	667055.0	Mm.327371	NM_001142539	ENSMUSG00000056133	Gm9992	-	predicted gene 9992	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-102433244-2	chr11	102433144	102433344	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008175, exon 3 of 13)	exon (NM_008175, exon 3 of 13)	2922.0	NM_008175	14824.0	Mm.1568	NM_008175	ENSMUSG00000034708	Grn	Pgrn|epithelin	granulin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-82725796-2	chr3	82725696	82725896	+	984.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	150687.0	NM_001277170	633285.0	Mm.265114	NM_001146328	ENSMUSG00000033882	Rbm46	EG633285|Gm761	RNA binding motif protein 46	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106789946-3	chr11	106789859	106790059	+	918.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355677)	promoter-TSS (NM_001355677)	707.0	NM_001166685	320162.0	Mm.30524	NM_177088	ENSMUSG00000018372	Cep95	4732496G21Rik|AI118346|AI448335|Ccdc45|D330027A14Rik|F630025I20Rik	centrosomal protein 95	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117066886-3	chr11	117066794	117066994	+	928.861084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9889.0	NR_027059	76972.0	Mm.309167	NR_027059	ENSMUSG00000086859	Snhg20	2810008D09Rik	small nucleolar RNA host gene 20	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-66350407-4	chr9	66350321	66350521	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145617)	promoter-TSS (NM_145617)	-29.0	NM_145617	235439.0	Mm.244179	NM_145617	ENSMUSG00000038664	Herc1	2810449H11Rik|B230218H07|D130015N03Rik|tbl	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-20785357-3	chr10	20785260	20785460	+	795.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60282.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76523171-1	chr15	76523071	76523271	+	548.0	f0_balb.idr	Intergenic	CpG	-1042.0	NM_130893	170729.0	Mm.218747	NM_130893	ENSMUSG00000048385	Scrt1	-	scratch family zinc finger 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-7743041-2	chr9	7742941	7743141	+	694.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21036.0	NM_133739	71929.0	Mm.283293	NM_133739	ENSMUSG00000050912	Tmem123	2310075C12Rik	transmembrane protein 123	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-4347798-3	chr18	4347663	4347863	+	750.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007746, intron 2 of 7)	intron (NM_007746, intron 2 of 7)	5190.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5695478-2	chr19	5695354	5695554	+	605.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_022012, intron 4 of 11)	intron (NM_022012, intron 4 of 11)	6323.0	NM_022012	26403.0	Mm.185026	NM_022012	ENSMUSG00000004054	Map3k11	2610017K16Rik|Mlk3|PTK1|SPRK	mitogen-activated protein kinase kinase kinase 11	protein-coding	-1.09673369143719	-1.0731013115114	-1.08529267491915	-1.09285102390494	-0.321127520541282	-1.07045939220346	-1.08253281747072	-1.09244324268126	2.98800045075445	0.374886936590324	1
Merged-chr18-68219157-2	chr18	68219060	68219260	+	759.166626	f0_balb.idr|f0_c57.idr	intron (NM_172631, intron 3 of 5)	intron (NM_172631, intron 3 of 5)	-8786.0	NM_001357444	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10857664-2	chr19	10857564	10857764	+	799.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_133804)	TTS (NM_133804)	12115.0	NM_133804	98170.0	Mm.490254	NM_133804	ENSMUSG00000024736	Tmem132a	6720481D13Rik|Hspa5bp1|Orai1|R74613	transmembrane protein 132A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-20695199-3	chr18	20695112	20695312	+	705.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019737, intron 5 of 8)	intron (NM_019737, intron 5 of 8)	-29952.0	NR_155534	102633478.0		NR_155534	ENSMUSG00000085595	Gm16090	-	predicted gene 16090	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-58745760-2	chr1	58745660	58745860	+	625.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355056, intron 7 of 8)	intron (NM_001355056, intron 7 of 8)	15208.0	NM_001293805	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-55928830-3	chr7	55928708	55928908	+	775.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011370, intron 30 of 30)	MLT1E1|LTR|ERVL-MaLR	33685.0	NM_001256133	93790.0	Mm.37249	NM_023647	ENSMUSG00000030452	Nipa2	2600017P10Rik|3830408P04Rik|AB041581	non imprinted in Prader-Willi/Angelman syndrome 2 homolog (human)	protein-coding	1.10289974964413	2.01190454917952	1.55030462600753	2.42648921588684	1.87533140210347	0.970893223354914	0.949207849794982	1.35062761417593	-1.54333986034006	0.211225956047626	0.700323931057359
Merged-chr9-75315495-1	chr9	75315395	75315595	+	546.0	f1_balb.idr	intron (NM_010313, intron 3 of 12)	intron (NM_010313, intron 3 of 12)	1427.0	NM_138719	14697.0	Mm.17604	NM_010313	ENSMUSG00000032192	Gnb5	GBS|Gbeta5|flr	guanine nucleotide binding protein (G protein), beta 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-86677087-3	chr17	86676987	86677187	+	950.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-76777.0	NM_010137	13819.0	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-12741793-3	chr18	12741702	12741902	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042419, intron 1 of 5)	intron (NM_001042419, intron 1 of 5)	447.0	NM_027687	71132.0	Mm.179740	NM_027687	ENSMUSG00000024430	Cabyr	1700016C01Rik|4933421A18Rik|CBP86|FSP-2	calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106274418-2	chr11	106274318	106274518	+	542.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1446.0	NM_001130187	83796.0	Mm.21772	NM_031878	ENSMUSG00000078619	Smarcd2	AW322457|Baf60b	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-132318334-2	chr7	132318234	132318434	+	552.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_028578)	TTS (NR_028578)	-1106.0	NM_029935	77590.0	Mm.213582	NM_029935	ENSMUSG00000030930	Chst15	4631426J05Rik|BRAG|GalNAc4S-6ST|GalNAcS-6ST|MAd5|mKIAA0598	carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64371780-4	chr5	64371698	64371898	+	920.4833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	96144.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180247402-2	chr1	180247302	180247502	+	555.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001128605, intron 1 of 10)	intron (NM_001128605, intron 1 of 10)	-1452.0	NM_011183	19165.0	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-52270717-2	chr6	52270617	52270817	+	631.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7942.0	NR_110442	791364.0	Mm.97466	NR_110441	ENSMUSG00000055408	Hottip	Gm15053	Hoxa distal transcript antisense RNA	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-61861917-4	chr11	61861818	61862018	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6826.0	NM_013881	29869.0	Mm.162025	NM_013881	ENSMUSG00000004798	Ulk2	A830085I22Rik|AU015340|Unc51.2|mKIAA0623	unc-51 like kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-23084048-2	chr10	23083948	23084148	+	877.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-263920.0	NM_011545	21412.0	Mm.16497	NM_011545	ENSMUSG00000045680	Tcf21	Pod-1|Pod1|bHLHa23|capsulin|epc|epicardin	transcription factor 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32084716-4	chr2	32084547	32084747	+	918.3988039999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175511)	promoter-TSS (NM_175511)	22.0	NR_151493	241303.0	Mm.250441	NM_175511	ENSMUSG00000050592	Fam78a	A130092J06Rik	family with sequence similarity 78, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-119483463-4	chr12	119483355	119483555	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	40045.0	NM_001163136	238455.0	Mm.31376	NM_001163136	ENSMUSG00000041886	Macc1	4732474O15Rik|Gm267	metastasis associated in colon cancer 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-117995581-4	chr3	117995489	117995689	+	961.6749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-126653.0	NM_029655	76561.0	Mm.33824	NM_029655	ENSMUSG00000028007	Snx7	2510028H01Rik	sorting nexin 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125685618-4	chr6	125685527	125685727	+	994.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011708, intron 50 of 51)	intron (NM_011708, intron 50 of 51)	-4792.0	NM_153589	243634.0	Mm.333398	NM_153589	ENSMUSG00000038115	Ano2	BC033409|Tmem16b	anoctamin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-98693020-7	chr13	98692833	98693033	+	928.9285890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025606, intron 1 of 3)	intron (NM_001025606, intron 1 of 3)	1898.0	NM_001025606	380863.0	Mm.28264	NM_001025606	ENSMUSG00000052485	Tmem171	Gm905	transmembrane protein 171	protein-coding	0.944450816004911	0.781380042885424	0.756792888479498	0.568750964899829	1.05487699583024	0.585974387378272	1.27226179713158	1.12236875631909	1.43057464877355	0.351909101249635	1
Merged-chr11-70223629-2	chr11	70223529	70223729	+	558.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_007528)	TTS (NM_007528)	-2635.0	NM_172371	69309.0	Mm.93266	NM_172371	ENSMUSG00000044367	Slc16a13	1700007D07Rik	solute carrier family 16 (monocarboxylic acid transporters), member 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-121425472-1	chr5	121425372	121425572	+	934.0	f1_c57bl6.idr	intron (NM_172722, intron 13 of 23)	intron (NM_172722, intron 13 of 23)	27002.0	NM_026129	67397.0	Mm.154570	NM_026129	ENSMUSG00000029616	Erp29	1200015M03Rik|2810446M09Rik|AW209030|Erp28|Erp31|PDI-Db	endoplasmic reticulum protein 29	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81019368-2	chr15	81019268	81019468	+	885.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001082536, intron 8 of 13)	intron (NM_001082536, intron 8 of 13)	41603.0	NM_134091	105835.0	Mm.274943	NM_134091	ENSMUSG00000042303	Sgsm3	1810012I01Rik|AI428557|BB175482|Cip85|R75178|RUSC3|Rutbc3	small G protein signaling modulator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-67146874-4	chr15	67146756	67146956	+	927.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009177, intron 2 of 8)	intron (NM_009177, intron 2 of 8)	30026.0	NM_009177	20442.0	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-36609142-4	chr15	36609057	36609257	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008774)	promoter-TSS (NM_008774)	-184.0	NM_008774	18458.0	Mm.371570	NM_008774	ENSMUSG00000022283	Pabpc1	PABP|Pabp1|PabpI|Pabpl1|ePAB	poly(A) binding protein, cytoplasmic 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-9317512-4	chr11	9317358	9317558	+	791.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178259, intron 23 of 61)	intron (NM_178259, intron 23 of 61)	125516.0	NM_178259	268379.0	Mm.39270	NM_178259	ENSMUSG00000004668	Abca13	9830132L24|A930002G16Rik|AI956815	ATP-binding cassette, sub-family A (ABC1), member 13	protein-coding	4.27641860400361	2.57012138923756	2.94260357323438	3.53319419465144	3.99823980843142	4.23642926059456	3.41005685429027	2.86867424234072	0.318984440684068	0.606999812309788	0.974576632476413
Merged-chr17-81697927-2	chr17	81697827	81698027	+	911.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 1 of 8)	Charlie1b|DNA|hAT-Charlie	40460.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-121996935-4	chr5	121996854	121997054	+	939.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007804, intron 2 of 22)	L1MC4a|LINE|L1	50871.0	NM_007804	13048.0	Mm.156172	NM_007804	ENSMUSG00000042589	Cux2	1700051K22Rik|Cutl2|Cux-2	cut-like homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-48418654-2	chr4	48418554	48418754	+	661.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001281978, intron 15 of 18)	MLT1H2-int|LTR|ERVL-MaLR	54809.0	NM_172304	269536.0	Mm.272025	NM_172304	ENSMUSG00000028345	Tex10	2610206N19Rik|2810462N03Rik|BC006867	testis expressed gene 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-66445614-2	chr8	66445514	66445714	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175188, intron 6 of 7)	MTEb|LTR|ERVL-MaLR	40916.0	NM_025465	66282.0	Mm.294985	NM_025465	ENSMUSG00000025591	Tma16	1810029B16Rik	translation machinery associated 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-119238605-5	chr12	119238534	119238734	+	942.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177290)	promoter-TSS (NM_177290)	-358.0	NM_177290	320910.0	Mm.217000	NM_177290	ENSMUSG00000025321	Itgb8	4832412O06Rik	integrin beta 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-101717779-4	chr4	101717654	101717854	+	893.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001122899, exon 1 of 19)	5' UTR (NM_001122899, exon 1 of 19)	347.0	NM_010704	16847.0	Mm.259282	NM_010704	ENSMUSG00000057722	Lepr	LEPROT|Leprb|Modb1|OB-RGRP|Obr|db|diabetes|obese-like|obl	leptin receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-61114549-2	chr18	61114419	61114619	+	980.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037859, intron 6 of 21)	intron (NM_001037859, intron 6 of 21)	-2949.0	NR_105949	102466212.0		NR_105949	ENSMUSG00000098389	Mir6983	Gm27496|mmu-mir-6983	microRNA 6983	ncRNA	-1.06344364775841	-1.04368536008904	-1.05499708726637	-1.06019777241716	-0.684687852939284	-0.695980942785732	-1.05243636017942	-1.05985544598439	2.75452886125285	0.384336371218222	1
Merged-chr19-13737599-2	chr19	13737499	13737699	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	-11509.0	NM_146990	258992.0	Mm.391191	NM_146990	ENSMUSG00000050865	Olfr1494	MOR266-1	olfactory receptor 1494	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-48766755-4	chr2	48766668	48766868	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47341.0	NM_007396	11480.0	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-180117763-2	chr2	180117663	180117863	+	772.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1603.0	NM_144500	228983.0	Mm.253578	NM_144500	ENSMUSG00000039050	Osbpl2	C130070J12Rik|ORP-2|Orp2|mKIAA0772	oxysterol binding protein-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-61227254-4	chr19	61227143	61227343	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009970, intron 2 of 11)	CpG-7695	1175.0	NM_009970	12982.0	Mm.287228	NM_009970	ENSMUSG00000059326	Csf2ra	CD116|Csfgmra|GM-CSF-Ra|GM-CSFR	colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)	protein-coding	3.47408149771408	2.07624270909157	3.76630395379848	4.11080946584571	3.50328555006956	2.09451915287175	4.29757268630359	4.13040414259189	0.279341847758441	0.683350114026679	0.995882295196263
Merged-chr8-82773396-1	chr8	82773296	82773496	+	877.0	f1_balb.idr	intron (NM_145600, intron 1 of 9)	intron (NM_145600, intron 1 of 9)	730.0	NM_145600	30932.0	Mm.269248	NM_145600	ENSMUSG00000031711	Zfp330	BC008086|Noa36|Znf330	zinc finger protein 330	protein-coding	1.50930932942409	1.3980336324194	0.93131248119293	1.59800813460406	2.40424033419809	1.40856859119559	0.935598479467704	1.60704264261984	1.05881810227468	0.394439701176945	0.882816975759419
Merged-chr3-126978997-1	chr3	126978897	126979097	+	708.0	f1_balb.idr	intron (NM_178655, intron 4 of 24)	intron (NM_178655, intron 4 of 24)	19455.0	NM_178655	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	0.979422430699916	0.932620568145352	0.908857084622524	1.14586410476459	1.27910970235603	1.09765869659608	0.914105251917604	1.25759641114894	0.783833802877431	0.553014494598774	0.959564390599126
Merged-chr3-89266570-4	chr3	89266458	89266658	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026767)	promoter-TSS (NM_026767)	97.0	NM_026767	68563.0	Mm.272927	NM_026767	ENSMUSG00000042737	Dpm3	1110001H19Rik|AV117483	dolichyl-phosphate mannosyltransferase polypeptide 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-62053731-2	chr15	62053631	62053831	+	828.099976	f1_balb.idr|f1_c57bl6.idr	intron (NR_132746, intron 1 of 6)	intron (NR_132746, intron 1 of 6)	14474.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-87750418-1	chr3	87750318	87750518	+	552.0	f1_c57bl6.idr	intron (NM_001032413, intron 23 of 23)	intron (NM_001032413, intron 23 of 23)	-1795.0	NM_028971	74485.0	Mm.474494	NM_028971	ENSMUSG00000023084	Lrrc71	4933430H15Rik	leucine rich repeat containing 71	protein-coding	0.369315847849279	0.224426783425433	1.18491280280891	0.20791827312504	0.374676076937472	0.226496767367595	1.20097768600013	0.209189887345136	0.0410685318769494	0.982707301823102	1
Merged-chr7-96915872-2	chr7	96915772	96915972	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35655.0	NM_153591	244141.0	Mm.274864	NM_153591	ENSMUSG00000018995	Nars2	AI875199	asparaginyl-tRNA synthetase 2 (mitochondrial)(putative)	protein-coding	0.79650835080325	0.833337512961728	1.31534756612546	1.39265086258124	1.22089789284038	1.37495179783992	1.44944829173911	1.40047056465821	1.03914868104375	0.441128657521187	0.910226146458244
Merged-chr1-33873772-4	chr1	33873663	33873863	+	983.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177235, intron 3 of 6)	intron (NM_177235, intron 3 of 6)	33858.0	NM_177235	320705.0	Mm.336619	NM_177235	ENSMUSG00000042182	Bend6	B230209C24Rik	BEN domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-130859064-6	chr7	130859054	130859254	+	793.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6570.0	NM_133942	101476.0	Mm.323554	NM_133942	ENSMUSG00000040268	Plekha1	AA960558|C920009D07Rik|TAPP1	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-82876891-1	chr4	82876791	82876991	+	658.0	f0_balb.idr	Intergenic	Intergenic	8260.0	NM_009887	12622.0	Mm.6780	NM_009887	ENSMUSG00000038192	Cer1	Cerl|Cerl1|Cerr1|cer-1	cerberus 1, DAN family BMP antagonist	protein-coding	-1.8418762459921	-1.8125357239735	-1.82140854000656	-1.82869693527674	-1.56059678980999	-1.8106129477253	-1.81939992894326	-1.82739231600805	1.3620893379502	0.699511506488145	1
Merged-chr6-97410954-2	chr6	97410854	97411054	+	833.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 5 of 23)	intron (NM_145148, intron 5 of 23)	48332.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-32600071-1	chr11	32599971	32600171	+	710.0	f1_c57bl6.idr	intron (NM_009288, intron 9 of 18)	ID4_|SINE|ID	-42484.0	NM_001271348	103583.0	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	-0.734697168562934	-1.28094420828655	-1.29131886204401	-1.29984091153697	-1.31008363841169	-1.2786959775384	-1.28897026783925	-1.29831546875223	-2.42902550944018	0.482518537989684	1
Merged-chr11-99081255-2	chr11	99081155	99081355	+	590.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172564, intron 2 of 12)	intron (NM_172564, intron 2 of 12)	8051.0	NM_172564	217169.0	Mm.262067	NM_172564	ENSMUSG00000017607	Tns4	9930017A07Rik|AA589547|AU016405|Cten	tensin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-89224794-4	chr9	89224678	89224878	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359993, intron 2 of 2)	(TTTG)n|Simple_repeat|Simple_repeat	13394.0	NM_001359993	107885.0	Mm.486274	NM_026829	ENSMUSG00000066442	Mthfs	1110034I12Rik|2310020H23Rik|AI119695	5, 10-methenyltetrahydrofolate synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16016149-2	chr7	16016049	16016249	+	953.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER91B|DNA|hAT-Tip100	-16654.0	NM_001081418	243842.0	Mm.440249	NM_001081418	ENSMUSG00000070808	Bicra	Gltscr1	BRD4 interacting chromatin remodeling complex associated protein	protein-coding	0.232213768925897	-0.29263681430215	-0.296659260555281	-0.299753222493217	0.243262212486583	-0.291728181737291	-0.295773272335036	-0.139716774283396	0.33724703162528	0.892138570272135	1
Merged-chr16-20498851-4	chr16	20498744	20498944	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172265)	promoter-TSS (NM_172265)	27.0	NM_172265	224045.0	Mm.233855	NM_172265	ENSMUSG00000003235	Eif2b5	C81315	eukaryotic translation initiation factor 2B, subunit 5 epsilon	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-24300258-2	chr7	24300158	24300358	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009561)	promoter-TSS (NM_009561)	-709.0	NM_009561	22719.0	Mm.12832	NM_009561	ENSMUSG00000050605	Zfp61	-	zinc finger protein 61	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-83001006-2	chr16	83000906	83001106	+	690.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2B2|LINE|L1	-1370137.0	NR_040567	75247.0	Mm.417813	NR_040567		4930553E22Rik	-	RIKEN cDNA 4930553E22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-53107086-4	chr19	53107002	53107202	+	797.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30850.0	NR_045320	78457.0	Mm.76932	NR_045320	ENSMUSG00000099988	1700054A03Rik	-	RIKEN cDNA 1700054A03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-127453962-4	chr2	127453844	127454044	+	824.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9379.0	NM_029629	68126.0	Mm.288676	NM_029629	ENSMUSG00000027371	Fahd2a	1500003K14Rik|B430104H02Rik|Cgi-105|Fahd2	fumarylacetoacetate hydrolase domain containing 2A	protein-coding	-0.481746432328506	-0.469214554318062	-0.473318280703541	-0.476485699865405	0.00981266690146199	-0.468289768798417	0.220978125795521	-0.475932277543194	3.5835758682466	0.180252994656414	1
Merged-chr2-5474556-3	chr2	5474417	5474617	+	870.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290375, intron 2 of 10)	ORR1C2|LTR|ERVL-MaLR	95127.0	NR_030601	100124465.0		NR_030601	ENSMUSG00000078031	Mir466d	Mirn466d	microRNA 466d	ncRNA	2.19170670591033	2.03242174779011	0.904538719889389	0.884817466189004	2.34306838736616	2.05002711860717	0.91005660352835	0.88831138821929	0.1788035677625	0.938945400322273	0.998431161219273
Merged-chr6-31121219-4	chr6	31121112	31121312	+	950.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110471, intron 3 of 3)	L1MA4|LINE|L1	-58119.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-80710732-4	chr15	80710637	80710837	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144812)	promoter-TSS (NM_144812)	-576.0	NM_144812	213988.0	Mm.131328	NM_144812	ENSMUSG00000047888	Tnrc6b	2700090M07Rik|A730065C02Rik|AI848765|D230019K20Rik	trinucleotide repeat containing 6b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-9074941-2	chr19	9074830	9075030	+	894.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_104460, intron 6 of 6)	ORR1F|LTR|ERVL-MaLR	13026.0	NM_011681	22287.0	Mm.2258	NM_011681	ENSMUSG00000024653	Scgb1a1	CC10|CC16|CCSP|PCB-BP|UG|UGB|Utg	secretoglobin, family 1A, member 1 (uteroglobin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-49050191-3	chr9	49050081	49050281	+	779.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-5400.0	NM_012039	26951.0	Mm.24791	NM_012039	ENSMUSG00000032264	Zw10	6330566F14Rik|MmZw10	zw10 kinetochore protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-115124961-3	chr7	115124870	115125070	+	900.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	173696.0	NR_040319	101786.0	Mm.395157	NR_040317	ENSMUSG00000108379	A730082K24Rik	AU044236	RIKEN cDNA A730082K24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-178416665-4	chr2	178416568	178416768	+	999.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001081289, exon 2 of 4)	5' UTR (NM_001081289, exon 2 of 4)	2134.0	NM_001081289	71532.0	Mm.40216	NM_001081289	ENSMUSG00000070476	Fam217b	9030418K01Rik|AI851938	family with sequence similarity 217, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-121451384-4	chr5	121451263	121451463	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026129, intron 1 of 2)	intron (NM_026129, intron 1 of 2)	1111.0	NM_026129	67397.0	Mm.154570	NM_026129	ENSMUSG00000029616	Erp29	1200015M03Rik|2810446M09Rik|AW209030|Erp28|Erp31|PDI-Db	endoplasmic reticulum protein 29	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-126910498-1	chr6	126910398	126910598	+	597.5	f0_balb.idr	intron (NM_207210, intron 2 of 14)	intron (NM_207210, intron 2 of 14)	11341.0	NM_207210	101320.0	Mm.44896	NM_207210	ENSMUSG00000030345	Dyrk4	AW049118|Dyrk4a|Dyrk4b	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 4	protein-coding	2.42962267287433	2.33986008801986	2.09198515922001	2.5678005861303	2.8766099946835	3.66872198376553	1.407158909983	2.34247059343413	0.895388428108147	0.300447610065118	0.801963340127147
Merged-chr16-7420066-6	chr16	7419947	7420147	+	870.9722289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	350212.0	NM_183188	268859.0	Mm.370334	NM_021477	ENSMUSG00000008658	Rbfox1	A2bp|A2bp1|Hrnbp1|fox-1	RNA binding protein, fox-1 homolog (C. elegans) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-66140172-4	chr5	66140097	66140297	+	982.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127382, intron 2 of 7)	intron (NM_001127382, intron 2 of 7)	10781.0	NM_001291226	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	3.88370649486072	3.84191480844936	3.91376332150443	3.09944300446352	3.46014070442751	4.29504987664117	2.68723103766531	2.88229777073672	-0.351513594022188	0.550303592183657	0.958882219733107
Merged-chr1-85572389-3	chr1	85572290	85572490	+	605.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E-int|LTR|ERVL-MaLR	26420.0	NM_030194	109032.0	Mm.335802	NM_030194	ENSMUSG00000070034	Sp110	5031415C07Rik|52kDa|5830484A20Rik|Ifi75|Ipr1	Sp110 nuclear body protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-43205686-2	chr7	43205586	43205786	+	542.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8353.0	NM_001177525	100170401.0		NM_001177525		EU599041	TU7	expressed sequence EU599041	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-56975349-4	chr18	56975250	56975450	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029909)	promoter-TSS (NM_029909)	29.0	NM_029909	77422.0	Mm.256874	NM_029909	ENSMUSG00000024592	C330018D20Rik	AU018666	RIKEN cDNA C330018D20 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-63922643-5	chr15	63922644	63922844	+	814.033325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_029414, intron 7 of 10)	intron (NR_029414, intron 7 of 10)	8283.0	NR_029414	74460.0	Mm.390801	NR_029414	ENSMUSG00000100127	Gsdmcl-ps	4933426G20Rik	gasdermin C-like, pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-65128026-2	chr13	65127932	65128132	+	567.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-15050.0	NM_133680	66631.0	Mm.239196	NM_133680	ENSMUSG00000038212	Mfsd14b	5730414C17Rik|AU045608|AW539692|Hiatl1	major facilitator superfamily domain containing 14B	protein-coding	-0.947981310248532	-1.06986221617136	-1.08111523493323	-1.08767915324048	-0.521931119253548	-1.06742364006257	-1.07856779814469	-1.08733643431101	1.79154211409157	0.579573222034837	1
Merged-chr18-56459156-6	chr18	56459019	56459219	+	827.805542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026240, intron 1 of 13)	intron (NM_026240, intron 1 of 13)	26987.0	NM_026240	107022.0	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|Gramd2b|NS3TP2	GRAM domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-108765001-4	chr8	108764904	108765104	+	967.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007496, intron 1 of 9)	intron (NM_007496, intron 1 of 9)	50360.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-63410689-4	chr14	63410592	63410792	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007549, intron 1 of 12)	intron (NM_007549, intron 1 of 12)	6495.0	NM_007549	12143.0	Mm.3962	NM_007549	ENSMUSG00000014453	Blk	-	B lymphoid kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-121873347-4	chr14	121873249	121873449	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4921.0	NR_131002	78312.0	Mm.188743	NR_130999	ENSMUSG00000102112	1810041H14Rik	-	RIKEN cDNA 1810041H14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-88692448-3	chr9	88692353	88692553	+	602.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359992, intron 2 of 2)	intron (NM_001359992, intron 2 of 2)	27134.0	NM_001359992	100039707.0	Mm.347377	NM_001128601	ENSMUSG00000079427	Mthfsl	Gm2382	5, 10-methenyltetrahydrofolate synthetase-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-43610587-2	chr19	43610487	43610687	+	950.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1738.0	NM_008699	18089.0	Mm.56994	NM_008699	ENSMUSG00000044220	Nkx2-3	Nkx-2.3|Nkx2.3|tinman	NK2 homeobox 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-66894815-3	chr4	66894727	66894927	+	985.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	67276.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-72629987-2	chr14	72629887	72630087	+	660.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_207636, intron 3 of 25)	intron (NM_207636, intron 3 of 25)	80016.0	NM_207636	319448.0	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	-2.18292257394068	-2.15545247547656	-2.03304972317742	-2.17058342868585	-2.18099422382073	-2.1536522739386	-2.16187909550322	-2.16936197735154	-0.683654500252594	0.846597994014493	1
Merged-chr15-101286219-2	chr15	101286119	101286319	+	720.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026566, intron 1 of 2)	B1_Mur2|SINE|Alu	1918.0	NM_026566	68118.0	Mm.482360	NM_026566	ENSMUSG00000037204	Atg101	9430023L20Rik|AA407441|AU022967	autophagy related 101	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-107363116-2	chr4	107363016	107363216	+	589.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4668.0	NM_028355	72787.0	Mm.28478	NM_028355	ENSMUSG00000028614	Ndc1	2810475A17Rik|AI450313|Tmem48|sks	NDC1 transmembrane nucleoporin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-30289741-1	chr11	30289641	30289841	+	554.0	f1_balb.idr	Intergenic	Intergenic	-69969.0	NM_175836	20742.0	Mm.123110	NM_009260	ENSMUSG00000020315	Sptbn1	9930031C03Rik|AL033301|SPTB2|Spnb-2|Spnb2|elf1|elf3|mKIAA4049	spectrin beta, non-erythrocytic 1	protein-coding	-0.371874139817479	-0.907497544543158	-0.91575832747622	-0.917883676395731	-0.653929632727339	-0.904885094889076	-0.915149760356743	-0.917512775697636	-1.10787147514619	0.724568129051228	1
Merged-chr2-117107413-2	chr2	117107313	117107513	+	612.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13658.0	NM_001277256	114715.0	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120538875-4	chr8	120538758	120538958	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_106159)	TTS (NR_106159)	162.0	NR_106159	102466849.0		NR_106159	ENSMUSG00000098280	Mir7687	Gm27573|mmu-mir-7687	microRNA 7687	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34954036-2	chr17	34953936	34954136	+	690.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1565.0	NR_015536	68763.0	Mm.28895	NR_015536	ENSMUSG00000092203	1110038B12Rik	0610009C20Rik|0910001G04Rik	RIKEN cDNA 1110038B12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19007505-2	chr7	19007405	19007605	+	652.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_178757)	TTS (NM_178757)	3440.0	NM_178757	272359.0	Mm.274237	NM_178757	ENSMUSG00000044030	Irf2bp1	6330414O09Rik|C530033F24	interferon regulatory factor 2 binding protein 1	protein-coding	0.932304796691539	1.20518137575865	0.737255655036462	1.38574066061077	0.82376939328206	0.76859276265653	0.549550002504047	0.541481522360928	-2.35079762646356	0.136932215264911	1
Merged-chr10-24670812-3	chr10	24670709	24670909	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001308329, intron 6 of 24)	intron (NM_001308329, intron 6 of 24)	41350.0	NM_001308327	18605.0	Mm.27254	NM_008813	ENSMUSG00000037370	Enpp1	4833416E15Rik|AI428932|C76301|CD203c|E-NPP 1|E-NPP1|Ly-41|M6S1|NPP1|Npps|PC-1|Pca|Pca-1|Pdnp1|ttw|twy	ectonucleotide pyrophosphatase/phosphodiesterase 1	protein-coding	-0.133136087283588	-0.11704986150676	-0.122310751012639	-0.126375638908369	0.678844364435575	0.252671633305734	0.218779033197692	-0.125665122365766	3.94638209719334	0.0801407963499168	1
Merged-chr12-70707900-4	chr12	70707777	70707977	+	843.6875	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-117637.0	NM_028127	319710.0	Mm.2962	NM_028127	ENSMUSG00000048285	Frmd6	2610019M19Rik|4930488L10Rik|AW212977|Willin	FERM domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-25830716-2	chr17	25830616	25830816	+	594.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_037243)	TTS (NR_037243)	712.0	NR_037243	100526479.0		NR_037243	ENSMUSG00000093076	Mir3082	mir-3082|mmu-mir-3082	microRNA 3082	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135987498-2	chr5	135987398	135987598	+	778.833374	f1_balb.idr|f1_c57bl6.idr	exon (NM_011776, exon 7 of 8)	exon (NM_011776, exon 7 of 8)	-7302.0	NM_023742	74198.0	Mm.275574	NM_023742	ENSMUSG00000004947	Dtx2	2610524D08Rik|AA408415|AU022494|Deltex2	deltex 2, E3 ubiquitin ligase	protein-coding	-1.3681463318974	-1.33624156493372	-1.34650167276047	-0.80669348975676	-1.36769697821496	-1.33401815676661	-1.34417900924365	-1.3534210303531	-2.3580830592467	0.49586638340111	1
Merged-chr13-58215690-4	chr13	58215589	58215789	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_152234)	promoter-TSS (NM_152234)	-36.0	NM_026842	56085.0	Mm.182053	NM_026842	ENSMUSG00000005312	Ubqln1	1110046H03Rik|1810030E05Rik|AU019746|C77538|D13Ertd372e|Da41|Dsk2|Plic-1|Plic1|Xdrp1	ubiquilin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46896194-2	chr8	46896094	46896294	+	841.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-90693.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-107303061-2	chr11	107302961	107303161	+	784.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 4 of 9)	B3A|SINE|B2	-113680.0	NM_001161329	68979.0	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3284727-3	chr12	3284631	3284831	+	886.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016676, intron 1 of 5)	B3A|SINE|B2	25238.0	NM_016676	19325.0	Mm.378993	NM_016676	ENSMUSG00000020671	Rab10	AW107754	RAB10, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-96710789-2	chr15	96710689	96710889	+	993.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11061.0	NM_175121	67760.0	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-125333926-2	chr5	125333826	125334026	+	598.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205083, intron 1 of 10)	intron (NM_001205083, intron 1 of 10)	7168.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166619876-2	chr2	166619776	166619976	+	637.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 6 of 39)	intron (NM_177782, intron 6 of 39)	55354.0	NR_152154	433503.0	Mm.491336	NR_152154		Gm29679	-	predicted gene, 29679	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36271665-4	chr1	36271575	36271775	+	992.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153408, intron 1 of 3)	intron (NM_153408, intron 1 of 3)	1750.0	NM_153408	214854.0	Mm.389110	NM_153408	ENSMUSG00000047180	Neurl3	2010300P06Rik|Lincr	neuralized E3 ubiquitin protein ligase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-92823423-2	chr7	92823323	92823523	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029494, intron 2 of 4)	intron (NM_029494, intron 2 of 4)	50824.0	NM_001355126	74041.0	Mm.26468	NM_028729	ENSMUSG00000030641	Ddias	4632434I11Rik|noxin	DNA damage-induced apoptosis suppressor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-78934230-2	chr16	78934130	78934330	+	596.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_139134, intron 1 of 5)	intron (NM_139134, intron 1 of 5)	3282.0	NM_139134	246048.0	Mm.77895	NM_139134	ENSMUSG00000022860	Chodl	3110074E07Rik|MT75|PRED12	chondrolectin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-22895828-4	chr8	22895728	22895928	+	820.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081149, intron 3 of 17)	intron (NM_001081149, intron 3 of 17)	36289.0	NM_001081149	244349.0	Mm.182776	NM_001081149	ENSMUSG00000031540	Kat6a	1500036M03|9930021N24Rik|MOZ|Myst3|Zfp220	K(lysine) acetyltransferase 6A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-156450322-2	chr1	156450214	156450414	+	1000.0	f0_balb.idr|f1_balb.idr	intron (NM_009230, intron 3 of 15)	intron (NM_009230, intron 3 of 15)	24014.0	NM_009230	20652.0	Mm.28099	NM_009230	ENSMUSG00000026600	Soat1	8430426K15Rik|ACAT-1|AW550831|Acact|ald|hid	sterol O-acyltransferase 1	protein-coding	2.19116106381718	3.20579513867443	1.45598332879627	1.40006342832032	3.63163978699374	4.58861888994293	3.69122232717779	3.2851717957925	2.65772195830958	0.000478331586410239	0.0107472329096443
Merged-chr6-124806157-4	chr6	124806057	124806257	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-2504.0	NM_001306051	14794.0	Mm.261906	NM_013539	ENSMUSG00000038451	Spsb2	AI461677|C9|Grcc9|SSB2	splA/ryanodine receptor domain and SOCS box containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-60753013-4	chr18	60752883	60753083	+	874.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4318.0	NM_008306	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	0.892405768217485	0.831941098457024	0.569320055470498	2.05033896663798	1.16532753112934	1.2139502134827	0.572591732506652	0.559766818679269	-1.22219062928654	0.425081728561468	0.901293602726532
Merged-chr16-95711733-2	chr16	95711633	95711833	+	628.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_011809, exon 4 of 10)	exon (NM_011809, exon 4 of 10)	9326.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-83274108-6	chr17	83273875	83274075	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58692.0	NM_134117	106522.0	Mm.311974	NM_134117	ENSMUSG00000024247	Pkdcc	AI115348|AW548124|Adtk1|ESTM17|MAd1|Sgk493|Vlk|X83346	protein kinase domain containing, cytoplasmic	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-45032829-4	chr16	45032743	45032943	+	901.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	-61168.0	NM_026439	67896.0	Mm.181074	NM_026439	ENSMUSG00000022665	Ccdc80	2610001E17Rik|DRO1|Ssg1|Urb	coiled-coil domain containing 80	protein-coding	3.55553395643427	4.68045273078125	4.53657615104665	4.37069786817144	3.58686775870064	4.93222854263455	4.78768179200041	4.17911098893785	0.154379315901123	0.735139317586156	0.998431161219273
Merged-chr10-40847400-4	chr10	40847296	40847496	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027879, intron 7 of 14)	intron (NM_027879, intron 7 of 14)	35747.0	NM_027879	71713.0	Mm.46063	NM_027879	ENSMUSG00000038446	Cdc40	1200003H23Rik|EHB3|PRP17	cell division cycle 40	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-87285263-2	chr16	87285163	87285363	+	852.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68922.0	NM_001159331	67768.0	Mm.296532	NM_026366	ENSMUSG00000044442	N6amt1	5830445C04Rik|Hemk2|Pred28	N-6 adenine-specific DNA methyltransferase 1 (putative)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-82364520-1	chr3	82364420	82364620	+	948.0	f1_c57bl6.idr	intron (NM_001356457, intron 4 of 13)	intron (NM_001356457, intron 4 of 13)	6333.0	NM_001356457	213582.0	Mm.271269	NM_001081230	ENSMUSG00000033900	Map9	5033421J10Rik|5330427D05Rik|ASAP|Mtap9	microtubule-associated protein 9	protein-coding	1.18052895587898	0.322036173724313	1.26024636721221	0.305448784267301	0.8484090753341	0.32411997809658	0.314785067300285	0.306724489533728	-1.99929506517814	0.307492592044327	1
Merged-chr7-96483064-4	chr7	96482960	96483160	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011858, intron 3 of 32)	intron (NM_011858, intron 3 of 32)	-141096.0	NR_046043	670727.0	Mm.421352	NR_046043	ENSMUSG00000085751	Gm15412	-	predicted gene 15412	ncRNA	-2.18292257394068	-2.15545247547656	-2.03304972317742	-2.17058342868585	-2.18099422382073	-2.1536522739386	-2.16187909550322	-2.16936197735154	-0.683654500252594	0.846597994014493	1
Merged-chr2-166746684-3	chr2	166746589	166746789	+	888.4166869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTRETN_Mm|LTR|ERVK	-32857.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-99096244-4	chr6	99096157	99096357	+	862.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053202, intron 4 of 18)	intron (NM_053202, intron 4 of 18)	-67959.0	NM_001197322	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-35729399-2	chr18	35729299	35729499	+	613.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001033168, exon 2 of 2)	3' UTR (NM_001033168, exon 2 of 2)	2410.0	NM_001033168	73449.0	Mm.379225	NM_001033168	ENSMUSG00000073598	1700066B19Rik	SMIM33	RIKEN cDNA 1700066B19 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-170205622-6	chr2	170205411	170205611	+	923.35553	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62836.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	-0.206775542634929	-0.44784708837358	-0.451374322231099	0.0525299245490867	-0.457898466605655	-0.103282554530835	-0.450597741773578	-0.453611905538088	-1.30697747843224	0.61737253651474	1
Merged-chr6-136654615-4	chr6	136654519	136654719	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025806, intron 1 of 10)	intron (NM_025806, intron 1 of 10)	7274.0	NM_025806	66857.0	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	6.28801993616821	6.75857096129981	7.03845464544299	6.3755595586171	6.55557195110837	5.95284033718709	6.64031243244521	6.32493423165864	-0.263275550010397	0.254251665216875	0.751985668675266
Merged-chr10-81354954-2	chr10	81354854	81355054	+	993.3000490000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2537.0	NM_028657	73822.0	Mm.182281	NM_028657	ENSMUSG00000034854	Mfsd12	C19orf28|F630110N24Rik|Wdt1|gr	major facilitator superfamily domain containing 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-82337179-2	chr15	82337079	82337279	+	963.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_008669, intron 3 of 9)	intron (NM_008669, intron 3 of 9)	1647.0	NM_001355546	17939.0	Mm.20325	NM_008669	ENSMUSG00000022453	Naga	-	N-acetyl galactosaminidase, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-93999261-1	chr11	93999161	93999361	+	552.0	f1_balb.idr	intron (NM_027569, intron 1 of 28)	B2_Mm2|SINE|B2	3170.0	NM_027569	70834.0	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-6962543-2	chr17	6962443	6962643	+	648.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1387.0	NM_147155	380608.0	Mm.371734	NM_147155	ENSMUSG00000052031	Tagap1	2610315E15Rik|AA415005|FKSG15	T cell activation GTPase activating protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-73703186-4	chr18	73703052	73703252	+	956.2708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_155448)	promoter-TSS (NR_155448)	589.0	NM_008540	17128.0	Mm.100399	NM_008540	ENSMUSG00000024515	Smad4	AW743858|D18Wsu70e|DPC4|Madh4	SMAD family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-79340228-4	chr11	79340124	79340324	+	896.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010897, intron 1 of 57)	CpG	332.0	NM_010897	18015.0	Mm.255596	NM_010897	ENSMUSG00000020716	Nf1	AW494271|Dsk9|E030030H24Rik|Mhdadsk9|Nf-1	neurofibromin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-34216815-1	chr13	34216715	34216915	+	638.0	f0_c57.idr	intron (NM_001033167, intron 4 of 10)	MTC-int|LTR|ERVL-MaLR	53851.0	NM_001110515	69666.0	Mm.24788	NM_001101430	ENSMUSG00000071451	Psmg4	PAC-4|mPAC4	proteasome (prosome, macropain) assembly chaperone 4	protein-coding	1.29446280356722	0.654019247259383	1.72332035820435	0.629926197154809	1.20358850848073	0.657023214654546	1.55720180704977	0.63179108414902	-0.341388735646111	0.831903216210897	0.998431161219273
Merged-chr13-64120969-3	chr13	64120879	64121079	+	837.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001321, intron 2 of 11)	intron (NM_001001321, intron 2 of 11)	8351.0	NM_001001321	70484.0	Mm.133731	NM_001001321	ENSMUSG00000033114	Slc35d2	5730408I21Rik|SQV7L|UGTrel8|hfrc|mUGTrel8	solute carrier family 35, member D2	protein-coding	2.97034266094811	2.24004821562664	2.00737150191467	3.07003207718336	2.52959555685607	1.39697297411224	2.02318100643339	1.96072277345849	-1.33243233174657	0.137323650664267	0.577568062866282
Merged-chr15-91180819-1	chr15	91180719	91180919	+	688.5	f0_balb.idr	intron (NM_011994, intron 3 of 9)	MTD|LTR|ERVL-MaLR	11188.0	NM_011994	26874.0	Mm.295456	NM_011994	ENSMUSG00000055782	Abcd2	ABC39|ALDL1|ALDR|ALDRP	ATP-binding cassette, sub-family D (ALD), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-22402271-3	chr4	22402208	22402408	+	964.0833130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172988, intron 5 of 8)	ORR1B1|LTR|ERVL-MaLR	44765.0	NR_104380	269514.0	Mm.40708	NM_172988	ENSMUSG00000040410	Fbxl4	AI836810|FBL4|FBL5	F-box and leucine-rich repeat protein 4	protein-coding	1.68671631780942	3.16730051301624	1.65611023260893	3.18801803763459	1.31873219912096	1.73423345687341	1.43768860964253	1.96224248416277	-2.30270302268025	0.0197219424651191	0.177888968963831
Merged-chr17-65735224-2	chr17	65735124	65735324	+	704.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133685, intron 1 of 6)	L1MA6|LINE|L1	37528.0	NM_133685	106572.0	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-39021039-4	chr18	39020942	39021142	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361073, intron 1 of 21)	intron (NM_001361073, intron 1 of 21)	27897.0	NM_175164	71302.0	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-67392347-4	chr18	67392253	67392453	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026473, intron 2 of 3)	intron (NM_026473, intron 2 of 3)	1622.0	NM_026473	67951.0	Mm.181860	NM_026473	ENSMUSG00000001473	Tubb6	2310057H16Rik|BB220206	tubulin, beta 6 class V	protein-coding	3.58373858120791	4.29092246602037	3.74030301575655	2.75428908098111	3.25621835454373	3.56251172925221	4.18889037531272	3.24146070509022	-0.11239019373889	0.843015730386887	0.998431161219273
Merged-chr19-56709068-2	chr19	56708968	56709168	+	855.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13304.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-13559511-4	chr2	13559403	13559603	+	894.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14808.0	NM_011701	22352.0	Mm.268000	NM_011701	ENSMUSG00000026728	Vim	-	vimentin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-86228399-4	chr15	86228312	86228512	+	907.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145476, intron 1 of 12)	Tigger5b|DNA|TcMar-Tigger	13953.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-3271475-3	chr15	3271391	3271591	+	930.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009155, intron 1 of 4)	intron (NM_009155, intron 1 of 4)	514.0	NM_009155	20363.0	Mm.392203	NM_009155	ENSMUSG00000064373	Selenop	AU018766|D15Ucla1|Se-P|Sepp1|selp	selenoprotein P	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-11494730-4	chr19	11494622	11494822	+	904.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164202, intron 1 of 4)	intron (NM_001164202, intron 1 of 4)	2684.0	NM_001164202	666926.0	Mm.486382	NM_001164202	ENSMUSG00000058470	Gm8369	EG666926	predicted gene 8369	protein-coding	-1.52696403314699	-1.49523967873556	-1.5048333853602	-1.51271394162622	-1.52473704212565	-1.49316068248889	-1.50266158046844	-1.06847079017215	2.01069003169785	0.564432837776867	1
Merged-chr9-90204248-2	chr9	90204148	90204348	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_194334, exon 13 of 13)	3' UTR (NM_194334, exon 13 of 13)	41270.0	NM_001311115	108153.0	Mm.102141	NM_001003911	ENSMUSG00000032363	Adamts7	ADAM-TS7|ADAMTS7B	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-111101861-2	chr10	111101761	111101961	+	555.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62941.0	NM_001003717	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36711265-2	chr1	36711165	36711365	+	589.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1340.0	NM_146107	226977.0	Mm.28521	NM_146107	ENSMUSG00000037351	Actr1b	2310066K23Rik|AA960180|AI851923|Arp1b	ARP1 actin-related protein 1B, centractin beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-156393904-4	chr2	156393807	156394007	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_024329)	promoter-TSS (NR_024329)	-928.0	NR_024329	347740.0	Mm.324242	NR_024329	ENSMUSG00000102869	2900097C17Rik	1810005K14Rik|4930563C06Rik	RIKEN cDNA 2900097C17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-52009015-4	chr14	52008911	52009111	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001253695, exon 3 of 5)	exon (NM_001253695, exon 3 of 5)	5547.0	NM_001253695	69890.0	Mm.475652	NM_027248	ENSMUSG00000049295	Zfp219	2010302A17Rik|Znf219	zinc finger protein 219	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-5600343-4	chr10	5600211	5600411	+	859.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026793, intron 1 of 1)	intron (NM_026793, intron 1 of 1)	6583.0	NM_026793	68632.0	Mm.338242	NM_026793	ENSMUSG00000046916	Myct1	1110020B04Rik|AI225941|AI642973|Mtmc1	myc target 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-36367528-4	chr15	36367400	36367600	+	876.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-84353.0	NM_001357631	30945.0	Mm.5181	NM_013923	ENSMUSG00000022280	Rnf19a	AA032313|Dorfin|Rnf19|UIP117|Ubce7ip2|XYbp	ring finger protein 19A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-108268820-4	chr5	108268718	108268918	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026106)	promoter-TSS (NM_026106)	-79.0	NM_026106	13486.0	Mm.303534	NM_026106	ENSMUSG00000029265	Dr1	1700121L09Rik|Dr1l|NC2|NC2beta	down-regulator of transcription 1	protein-coding	4.91379474194495	4.03653847543634	4.1183015488139	4.85663968469006	4.27031585134078	3.79878992527123	4.69665480605808	5.15890623804741	0.0349919498389352	0.935478313206239	0.998431161219273
Merged-chr17-83219502-3	chr17	83219397	83219597	+	778.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134117, intron 1 of 6)	intron (NM_134117, intron 1 of 6)	4214.0	NM_134117	106522.0	Mm.311974	NM_134117	ENSMUSG00000024247	Pkdcc	AI115348|AW548124|Adtk1|ESTM17|MAd1|Sgk493|Vlk|X83346	protein kinase domain containing, cytoplasmic	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-55812016-4	chr16	55811909	55812109	+	892.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001159394, exon 12 of 12)	3' UTR (NM_001159394, exon 12 of 12)	10129.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-39623366-4	chr18	39623278	39623478	+	985.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-136133.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-32581325-1	chr11	32581225	32581425	+	572.0	f1_c57bl6.idr	intron (NM_009288, intron 4 of 18)	intron (NM_009288, intron 4 of 18)	48059.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	1.12211758870586	0.763621590881325	0.737013839170949	2.40348163315872	0.683598652407816	2.67979354238738	1.02875284395082	1.39250279691503	0.568715598275438	0.679609328725502	0.995323723386884
Merged-chr4-155562242-5	chr4	155562075	155562275	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138671)	promoter-TSS (NM_138671)	-206.0	NM_138671	192185.0	Mm.28347	NM_138671	ENSMUSG00000029063	Nadk	4432404C02Rik|BC004012	NAD kinase	protein-coding	3.84815905906045	3.32403335362263	3.4967913118312	2.59941221878	3.66382633587582	3.45516591015025	4.36441737922162	3.6465559397195	0.645438631500229	0.244914117149834	0.743793345653992
Merged-chr10-98941059-3	chr10	98940938	98941138	+	660.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359507, intron 1 of 21)	intron (NM_001359507, intron 1 of 21)	25886.0	NM_026482	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-12315502-3	chr17	12315403	12315603	+	688.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357722, intron 1 of 25)	intron (NM_001357722, intron 1 of 25)	3157.0	NM_011948	26407.0	Mm.28587	NM_011948	ENSMUSG00000014426	Map3k4	D17Rp17|D17Rp17e|MAPKKK4|MEKK 4|MTK1|Mek4b|Mekk4|RP17|Rp17a|Tas|mKIAA0213	mitogen-activated protein kinase kinase kinase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-96889558-3	chr9	96889483	96889683	+	837.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289646)	promoter-TSS (NM_001289646)	-109.0	NM_001289647	235534.0	Mm.233031	NM_153420	ENSMUSG00000043587	Pxylp1	9430094M07Rik|Acpl2|BB177120|C130099A20Rik	2-phosphoxylose phosphatase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-49923604-4	chr7	49923496	49923696	+	897.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146013, intron 5 of 15)	intron (NM_001146013, intron 5 of 15)	11896.0	NM_148931	104245.0	Mm.207053	NM_148931	ENSMUSG00000039728	Slc6a5	Glyt2|prestin	solute carrier family 6 (neurotransmitter transporter, glycine), member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-90634674-2	chr17	90634574	90634774	+	703.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346957, intron 7 of 18)	Lx5|LINE|L1	158802.0	NR_136930	102634634.0		NR_136930		Gm20491	-	enolase 1, alpha non-neuron pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-27526677-4	chr7	27526579	27526779	+	761.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033315, intron 1 of 3)	intron (NM_001033315, intron 1 of 3)	3418.0	NM_001033315	233020.0	Mm.429716	NM_001033315	ENSMUSG00000040424	Hipk4	Gm162	homeodomain interacting protein kinase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-34570484-3	chr14	34570383	34570583	+	802.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039073, intron 6 of 14)	intron (NM_001039073, intron 6 of 14)	18124.0	NM_001039074	24131.0	Mm.29733	NM_011918	ENSMUSG00000021798	Ldb3	AW742271|PDLIM6|ZASP	LIM domain binding 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-56626706-4	chr13	56626600	56626800	+	880.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155548, intron 6 of 16)	L3b|LINE|CR1	17114.0	NR_155548	21810.0	Mm.14455	NM_009369	ENSMUSG00000035493	Tgfbi	68kDa|AI181842|AI747162|Beta-ig|big-h3	transforming growth factor, beta induced	protein-coding	4.10466905926385	3.46354653916355	4.0765494953365	2.91457132254166	3.6961230202976	3.91729250903859	3.1544867002849	3.87439632983308	-0.0585740390490168	0.912984667165135	0.998431161219273
Merged-chr10-112163635-4	chr10	112163486	112163686	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310675)	promoter-TSS (NM_001310675)	-35.0	NM_001310675	353025.0	Mm.194428	NM_178278	ENSMUSG00000035694	Caps2	D630005B03Rik	calcyphosphine 2	protein-coding	2.72324734229973	2.59842864480364	3.13259072845194	1.94275823391722	3.58726113424207	1.55636659242609	3.23553789259563	2.68857683644935	0.558092186694473	0.49482437200158	0.935679785535167
Merged-chr11-111312352-2	chr11	111312252	111312452	+	717.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	246188.0	NM_008425	16518.0	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-88567439-2	chr5	88567339	88567539	+	608.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289774, intron 1 of 17)	B1_Mur2|SINE|Alu	2399.0	NM_001289775	52822.0	Mm.270469	NM_027530	ENSMUSG00000029291	Rufy3	2810428M05Rik|6330416M07Rik|AW455998|AW538594|D5Bwg0860e|Ripx|Rpipx	RUN and FYVE domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-43175864-2	chr18	43175764	43175964	+	661.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31833.0	NM_178749	269019.0	Mm.150401	NM_178749	ENSMUSG00000039954	Stk32a	A930015B13Rik|YANK1	serine/threonine kinase 32A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-74008483-2	chr13	74008383	74008583	+	701.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_182839)	promoter-TSS (NM_182839)	-936.0	NM_182839	72948.0	Mm.39752	NM_182839	ENSMUSG00000021573	Tppp	2900041A09Rik|AI849835	tubulin polymerization promoting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-31733141-4	chr11	31733035	31733235	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61273.0	NM_001024919	69556.0	Mm.34183	NM_001024919	ENSMUSG00000044502	Bod1	2310022M17Rik|BOD2.1|Fam44b	biorientation of chromosomes in cell division 1	protein-coding	6.21680230595464	6.19297278750972	5.88719594753515	5.36200814635113	5.18684197288962	6.08659374946838	3.56756363681781	5.06885255163996	-0.811699849637696	0.163514698016493	0.626389001936116
Merged-chr2-111126073-2	chr2	111125973	111126173	+	661.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	103527.0	NM_026248	67575.0	Mm.84331	NM_026248	ENSMUSG00000027157	4930430A15Rik	-	RIKEN cDNA 4930430A15 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127592626-4	chr10	127592532	127592732	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 10 of 88)	intron (NM_008512, intron 10 of 88)	28516.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	1.1403479213096	1.08924726472616	1.057634377268	0.832162404827483	1.68126715292017	1.71146425872553	1.06467261030615	1.86405573550489	2.42684281650605	0.0627686676210697	0.372329502694922
Merged-chr8-13287519-4	chr8	13287463	13287663	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172282)	promoter-TSS (NM_172282)	-450.0	NM_172282	234076.0	Mm.219813	NM_172282	ENSMUSG00000038497	Tmco3	B230339H12Rik|C87304	transmembrane and coiled-coil domains 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-120180405-2	chr6	120180266	120180466	+	704.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016718, intron 1 of 3)	intron (NM_016718, intron 1 of 3)	-13457.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	-1.02683471148361	-1.00962055613079	-0.854065569089901	-0.735956315955525	-0.769749861903465	-1.00724084498234	-1.01811599344811	-1.02352408995863	-0.66183073002926	0.827066821994808	1
Merged-chr11-54247558-2	chr11	54247458	54247658	+	584.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009969, exon 4 of 4)	3' UTR (NM_009969, exon 4 of 4)	2341.0	NM_009969	12981.0	Mm.4922	NM_009969	ENSMUSG00000018916	Csf2	CSF|Csfgm|GMCSF|Gm-CSf|MGI-IGM	colony stimulating factor 2 (granulocyte-macrophage)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119056236-2	chr11	119056100	119056300	+	854.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TTTTA)n|Simple_repeat|Simple_repeat	-15287.0	NM_013926	30951.0	Mm.99953	NM_013926	ENSMUSG00000025578	Cbx8	Pc3	chromobox 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-34107523-2	chr8	34107424	34107624	+	624.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_011722, intron 1 of 6)	MTD|LTR|ERVL-MaLR	290.0	NM_001293758	22428.0	Mm.150373	NM_011722	ENSMUSG00000031516	Dctn6	AU044699|WS-3|p27	dynactin 6	protein-coding	1.0884868196675	0.950666431671686	2.3589684513391	1.14122246985642	2.23744820429553	1.6095332342814	1.55038478599762	1.1466092281595	0.429987155875452	0.725181128645899	0.998431161219273
Merged-chr13-64257167-1	chr13	64257067	64257267	+	559.0	f0_balb.idr	intron (NR_045798, intron 1 of 2)	ORR1B1|LTR|ERVL-MaLR	8467.0	NR_045798	66503.0	Mm.443331	NR_045798	ENSMUSG00000097101	1810034E14Rik	-	RIKEN cDNA 1810034E14 gene	ncRNA	0.622949590562576	0.361697029165036	0.542488882731799	0.34740320268062	0.630275220756288	1.01964397987648	1.17088704436349	0.348496810805401	2.2369206343055	0.206186416248117	1
Merged-chr2-31381426-2	chr2	31381326	31381526	+	822.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-88844.0	NM_007494	11898.0	Mm.3217	NM_007494	ENSMUSG00000076441	Ass1	AA408052|ASS|Ass-1|fold	argininosuccinate synthetase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-37524765-4	chr17	37524668	37524868	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5189.0	NM_001005485	545205.0	Mm.383371	NM_001005485	ENSMUSG00000090675	Olfr111	-	olfactory receptor 111	protein-coding	4.34386918003468	4.29773117675585	4.15879009172712	4.88937111395429	3.87207693901288	4.66604630827315	4.19020301339453	4.39658082881981	-0.197309596081812	0.62979793906711	0.981201918729827
Merged-chr10-60282828-4	chr10	60282738	60282938	+	991.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011179, intron 1 of 14)	intron (NM_011179, intron 1 of 14)	-1623.0	NM_001146124	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94147900-4	chr10	94147787	94147987	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011629)	promoter-TSS (NM_011629)	-44.0	NM_011629	22025.0	Mm.107483	NM_011629	ENSMUSG00000005897	Nr2c1	4831444H07Rik|80.3|Eenr|TR2|Tr2-11	nuclear receptor subfamily 2, group C, member 1	protein-coding	5.99809622572829	5.56791856506005	5.46593544968006	6.27436689224217	5.87700100041467	5.57167460273076	4.676348302595	6.191128214358	-0.20174126805608	0.528692085063413	0.949398468857138
Merged-chr16-11423273-2	chr16	11423173	11423373	+	805.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028964, intron 11 of 20)	intron (NM_028964, intron 11 of 20)	17625.0	NM_001290148	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-125438154-4	chr1	125438060	125438260	+	984.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2433.0	NM_001205385	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-51859385-4	chr3	51859298	51859498	+	899.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	198219.0	NM_001310482	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28740065-2	chr17	28739965	28740165	+	549.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001168513, intron 9 of 11)	intron (NM_001168513, intron 9 of 11)	-29252.0	NM_011950	26415.0	Mm.27970	NM_011950	ENSMUSG00000004864	Mapk13	SAPK4|Serk4	mitogen-activated protein kinase 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-25487184-4	chr14	25487100	25487300	+	972.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	28015.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-118419210-2	chr10	118419110	118419310	+	712.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21836.0	NM_008337	15978.0	Mm.240327	NM_008337	ENSMUSG00000055170	Ifng	IFN-g|Ifg	interferon gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-133025923-1	chr1	133025823	133026023	+	745.0	f0_balb.idr	promoter-TSS (NM_001302803)	promoter-TSS (NM_001302803)	-507.0	NM_001302801	17248.0	Mm.426531	NM_008575	ENSMUSG00000054387	Mdm4	4933417N07Rik|AA414968|AL023055|AU018793|AU021806|C85810|Mdmx	transformed mouse 3T3 cell double minute 4	protein-coding	2.85500944580629	3.11535590301262	1.77645426306457	2.64798245769023	3.25516135990114	3.04748697883098	2.20033724046956	2.13199760509734	0.140277405776754	0.859805303091345	0.998431161219273
Merged-chr5-45856641-4	chr5	45856510	45856710	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172153)	promoter-TSS (NM_172153)	-58.0	NM_172153	209707.0	Mm.71498	NM_172153	ENSMUSG00000015882	Lcorl	Mlr1	ligand dependent nuclear receptor corepressor-like	protein-coding	0.766898869728753	0.419821177164043	0.732005615208471	0.407570390363366	0.872710851590184	0.421380358231618	0.739600835751263	1.03252707114894	1.18036382444767	0.493298739083722	1
Merged-chr13-107822043-1	chr13	107821943	107822143	+	692.0	f1_balb.idr	intron (NM_145456, intron 2 of 14)	intron (NM_145456, intron 2 of 14)	68021.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	1.19412216079199	1.59076945738123	1.640607642296	1.24680522536954	1.81240164121766	0.956983587640642	1.12748259630666	1.25228011236405	-0.320368728828225	0.798281805336553	0.998431161219273
Merged-chr5-72552879-3	chr5	72552736	72552936	+	919.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153351, intron 3 of 21)	intron (NR_153351, intron 3 of 21)	6809.0	NM_001359837	100978.0	Mm.187453	NM_133921	ENSMUSG00000072889	Nfxl1	1700012H24Rik|AW538212|D430033A06Rik|DNABF|GCF|Gm1058|TCF9	nuclear transcription factor, X-box binding-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99137695-2	chr7	99137610	99137810	+	666.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 1 of 14)	PB1D9|SINE|Alu	3434.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	1.41200852141118	0.964487520335124	1.68169044865317	1.85780682297592	1.10790078703359	2.3851291804658	0.948302891272679	1.75992190388747	0.50984431038488	0.681763574868217	0.995882295196263
Merged-chr2-103086698-1	chr2	103086598	103086798	+	622.0	f1_balb.idr	intron (NM_001355474, intron 2 of 5)	intron (NM_001355474, intron 2 of 5)	13023.0	NM_019735	56369.0	Mm.24772	NM_019735	ENSMUSG00000010911	Apip	APIP2|CGI-29|Mmrp19	APAF1 interacting protein	protein-coding	0.592327906949996	1.5249452472863	0.62441426012797	1.28730828140913	0.595385360106924	1.85218548641088	0.627758012817854	1.2959641472041	0.488457919978447	0.760703421394759	0.998431161219273
Merged-chr7-16738354-4	chr7	16738253	16738453	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198613)	promoter-TSS (NM_198613)	-91.0	NM_198613	232910.0	Mm.333597	NM_198613	ENSMUSG00000008036	Ap2s1	AI043088	adaptor-related protein complex 2, sigma 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-17359660-5	chr19	17359519	17359719	+	909.4933470000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010265, intron 1 of 2)	intron (NM_010265, intron 1 of 2)	-2952.0	NM_173442	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	3.81969117672186	3.77946384359914	3.73237922785092	3.2830403976534	3.13310951381667	3.80686521751739	4.61691116838611	4.08866048525751	0.488609700416812	0.344189744448553	0.845390144424048
Merged-chr17-65674772-4	chr17	65674655	65674855	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133685, intron 5 of 6)	intron (NM_133685, intron 5 of 6)	-32551.0	NM_001146002	213272.0	Mm.255732	NM_153519	ENSMUSG00000050612	Txndc2	AU021712|Sptrx-1|Sptrx1|Trx4	thioredoxin domain containing 2 (spermatozoa)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-93825403-4	chr1	93825288	93825488	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001310767, exon 1 of 10)	5' UTR (NM_001310767, exon 1 of 10)	148.0	NM_001310767	98314.0	Mm.383401	NM_178882	ENSMUSG00000073609	D2hgdh	AA408776|AA408778|AI325464	D-2-hydroxyglutarate dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-79128953-3	chr3	79128868	79129068	+	920.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001099624, intron 1 of 23)	intron (NM_001099624, intron 1 of 23)	15919.0	NM_001310536	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-37766166-2	chr2	37766066	37766266	+	872.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10083.0	NM_001163566	241324.0	Mm.392369	NM_001163566	ENSMUSG00000035403	Crb2	5930402A21|BC043114	crumbs family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-20735343-2	chr14	20735243	20735443	+	780.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010811)	promoter-TSS (NM_010811)	-781.0	NM_010811	17423.0	Mm.4084	NM_010811	ENSMUSG00000039308	Ndst2	Mndns|NDST-2	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47216751-2	chr17	47216651	47216851	+	600.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001097623, intron 3 of 19)	intron (NM_001097623, intron 3 of 19)	-13479.0	NM_172622	224829.0	Mm.260989	NM_172622		Trerf1	9430096I18Rik|AI429294|B830015H24|RAPA|Trep-132|Trep132	transcriptional regulating factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-141056189-4	chr5	141056077	141056277	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55581.0	NM_175362	108723.0	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153158604-4	chr2	153158589	153158789	+	624.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-2612.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-41133635-5	chr8	41133460	41133660	+	877.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001005863, exon 1 of 14)	5' UTR (NM_001005863, exon 1 of 14)	166.0	NM_001005863	102103.0	Mm.149438	NM_001005863	ENSMUSG00000045636	Mtus1	AI481402|ATBP135|Atip1|B430010I23Rik|B430305I03Rik|C85752|Cctsg1-440|MD44|MTSG1|mKIAA1288	mitochondrial tumor suppressor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-44436740-4	chr17	44436642	44436842	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	248170.0	NM_172621	224796.0	Mm.37666	NM_172621	ENSMUSG00000023959	Clic5	5730531E12Rik|B330005L24|Gm322|jbg|nmf318	chloride intracellular channel 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83118251-2	chr11	83118151	83118351	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011407, intron 1 of 1)	intron (NM_011407, intron 1 of 1)	1431.0	NM_011407	20555.0	Mm.10948	NM_011407	ENSMUSG00000078763	Slfn1	AV316259	schlafen 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-43400311-2	chr13	43400211	43400411	+	635.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023554, intron 3 of 7)	intron (NM_023554, intron 3 of 7)	1935.0	NM_023554	70078.0	Mm.439927	NM_023554	ENSMUSG00000063200	Nol7	2210008F15Rik|5730556I21Rik|NOP27|RARG-1	nucleolar protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-106232019-3	chr1	106231923	106232123	+	906.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133821, intron 1 of 16)	intron (NM_133821, intron 1 of 16)	60154.0	NM_133821	98432.0	Mm.24115	NM_133821	ENSMUSG00000044340	Phlpp1	AI836256|Phlpp|Plekhe1|SCOP|mKIAA0606	PH domain and leucine rich repeat protein phosphatase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98688407-2	chr11	98688307	98688507	+	791.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009439, intron 4 of 11)	intron (NM_009439, intron 4 of 11)	5853.0	NM_009439	22123.0	Mm.12194	NM_009439	ENSMUSG00000017221	Psmd3	AI255837|AntP91a|D11Bwg1349e|Psd3|Tstap91a	proteasome (prosome, macropain) 26S subunit, non-ATPase, 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-93276449-3	chr15	93276341	93276541	+	931.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1262.0	NM_001346785	223827.0	Mm.22819	NM_001033275	ENSMUSG00000036197	Gxylt1	Glt8d3|Gm1228|Gm87	glucoside xylosyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-18247718-3	chr16	18247621	18247821	+	637.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011239, intron 1 of 5)	intron (NM_011239, intron 1 of 5)	973.0	NM_011239	19385.0	Mm.235287	NM_011239	ENSMUSG00000005732	Ranbp1	Htf9a	RAN binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-7210018-4	chr7	7209910	7210110	+	969.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145577)	promoter-TSS (NM_145577)	-12.0	NM_145577	232855.0	Mm.360403	NM_145577	ENSMUSG00000066838	Zfp772	-	zinc finger protein 772	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-45802120-2	chr4	45802020	45802220	+	701.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028270, intron 1 of 1)	intron (NM_028270, intron 1 of 1)	3098.0	NM_028270	72535.0	Mm.331583	NM_028270	ENSMUSG00000035561	Aldh1b1	2700007F14Rik	aldehyde dehydrogenase 1 family, member B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30066345-4	chr2	30066284	30066484	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001204875)	promoter-TSS (NM_001204875)	-90.0	NM_001204875	56086.0	Mm.326055	NM_023871	ENSMUSG00000054766	Set	2610030F17Rik|5730420M11Rik|AA407739|I-2PP2A|StF-IT-1|TAF-I	SET nuclear oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-6705774-4	chr2	6705652	6705852	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110232, intron 4 of 15)	intron (NM_001110232, intron 4 of 15)	15910.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-152661358-2	chr2	152661298	152661498	+	588.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-8063.0	NM_010376	14950.0	Mm.277327	NM_010376	ENSMUSG00000019188	H13	1200006O09Rik|4930443L17Rik|5031424B04Rik|AV020344|H-13|Hm13|PSL3|Spp	histocompatibility 13	protein-coding	1.91348196358966	2.78470652941736	2.0726327115282	1.28105870657864	2.04814646598298	2.00426286551521	2.33776794524495	2.46131647462318	0.222179414571024	0.81556117591376	0.998431161219273
Merged-chr8-94810190-4	chr8	94810081	94810281	+	920.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011332)	promoter-TSS (NM_011332)	-272.0	NM_011332	20295.0	Mm.41988	NM_011332	ENSMUSG00000031780	Ccl17	Abcd-2|Scya17|Scya17l|Tarc	chemokine (C-C motif) ligand 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83637319-4	chr6	83637183	83637383	+	872.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18833.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	2.3660333678953	1.12616132432067	2.27135097189302	2.01520014727357	1.92319289986019	1.13131292077932	1.3480116723991	1.79557472842046	-1.23018138118063	0.279417949561402	0.782796519031219
Merged-chr15-58595006-3	chr15	58594883	58595083	+	931.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	179515.0	NM_145959	210998.0	Mm.3224	NM_145959	ENSMUSG00000037119	Fam91a1	AV220772|BC033609|D15Ertd621e|SKIN|mKIAA0493	family with sequence similarity 91, member A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-7839599-2	chr9	7839499	7839699	+	659.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10B|LTR|ERVL	-2542.0	NM_007465	11797.0	Mm.335659	NM_007465	ENSMUSG00000057367	Birc2	AW146227|Api1|Api2|Birc3|C-IAP1|C330006D17Rik|HIAP1|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF48|cIAP1|cIAP2|mcIAP1	baculoviral IAP repeat-containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53133624-4	chr4	53133524	53133724	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 2 of 49)	intron (NM_013454, intron 2 of 49)	26271.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-113865867-1	chr11	113865767	113865967	+	543.0	f0_balb.idr	intron (NM_172800, intron 12 of 44)	intron (NM_172800, intron 12 of 44)	-114052.0	NM_001163346	56699.0	Mm.293378	NM_020006	ENSMUSG00000041598	Cdc42ep4	1500041M20Rik|Borg4|CEP4	CDC42 effector protein (Rho GTPase binding) 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129459686-1	chr4	129459586	129459786	+	572.0	f1_balb.idr	Intergenic	LTRIS_Mus|LTR|ERV1	-1993.0	NM_133889	100383.0	Mm.17918	NM_133889	ENSMUSG00000040859	Bsdc1	1110063F24Rik|AW011758	BSD domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-5505996-4	chr11	5505910	5506110	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14631.0	NM_013842	22433.0	Mm.469937	NM_013842	ENSMUSG00000020484	Xbp1	D11Ertd39e|TREB-5|TREB5|XBP-1	X-box binding protein 1	protein-coding	5.69585311043874	5.40340839043898	5.46619367816263	6.18161740590532	5.82482258275644	5.21071542076838	5.58893300969972	6.23716178687833	0.051216400867568	0.861241926323208	0.998431161219273
Merged-chr4-70265401-1	chr4	70265301	70265501	+	761.0	f0_balb.idr	intron (NM_001313762, intron 21 of 33)	intron (NM_001313762, intron 21 of 33)	145034.0	NM_001313762	214444.0	Mm.370777	NM_145990	ENSMUSG00000039298	Cdk5rap2	2900018K03Rik|an|mKIAA1633	CDK5 regulatory subunit associated protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-50038539-4	chr18	50038447	50038647	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360935, intron 1 of 1)	intron (NM_001360935, intron 1 of 1)	7563.0	NM_001360935	106869.0	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	4.40951850906285	4.55178991100581	4.08936510681747	5.06553186086487	4.81309076032142	4.58340870447938	5.05898722425999	4.99160121180006	0.366087501854922	0.31712231414521	0.82036082904576
Merged-chr7-127511164-2	chr7	127511064	127511264	+	743.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001304266)	promoter-TSS (NM_001304266)	-819.0	NM_001304266	100043597.0	Mm.428042	NM_175144	ENSMUSG00000053877	Srcap	B930091H02Rik|D030022P06Rik|F630004O05Rik	Snf2-related CREBBP activator protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101197314-2	chr15	101197214	101197414	+	808.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_007395, intron 3 of 8)	B1_Mur2|SINE|Alu	3445.0	NR_105927	102466774.0		NR_105927	ENSMUSG00000106563	Mir6962	mmu-mir-6962	microRNA 6962	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-75326775-4	chr10	75326660	75326860	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009630, intron 2 of 2)	MIR3|SINE|MIR	1902.0	NM_001331096	11540.0	Mm.333734	NM_009630	ENSMUSG00000020178	Adora2a	A2AAR|A2aR|AA2AR	adenosine A2a receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-19867764-4	chr4	19867675	19867875	+	855.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49048.0	NM_028746	74087.0	Mm.173833	NM_028746	ENSMUSG00000041052	Slc7a13	0610009O04Rik|AGT-1|AGT1|XAT2	solute carrier family 7, (cationic amino acid transporter, y+ system) member 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4287139-1	chr19	4287039	4287239	+	541.0	f1_c57bl6.idr	exon (NM_130863, exon 22 of 22)	exon (NM_130863, exon 22 of 22)	-4002.0	NM_026720	68423.0	Mm.23642	NM_026720	ENSMUSG00000005986	Ankrd13d	0710001P18Rik|AI430801	ankyrin repeat domain 13 family, member D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-80146615-3	chr12	80146507	80146707	+	828.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13763.0	NR_033514	69548.0	Mm.269712	NR_033514		2310015A10Rik	5330419I17Rik	RIKEN cDNA 2310015A10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-15288955-2	chr7	15288855	15289055	+	604.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-99896.0	NM_145708	246792.0	Mm.26391	NM_145708	ENSMUSG00000074369	Obox2	-	oocyte specific homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16071985-2	chr7	16071885	16072085	+	619.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001347559, exon 1 of 14)	exon (NM_001347559, exon 1 of 14)	140.0	NM_001099277	666528.0	Mm.290718	NM_001099277	ENSMUSG00000078796	Zfp541	EG666528|Znf541	zinc finger protein 541	protein-coding	-0.283309298865633	-0.265868190317	0.229582909516696	-0.275943331332528	0.720410600187967	-0.264595224749331	-0.270285386591857	-0.275172251858743	1.39983112706995	0.579760873189253	1
Merged-chr17-7913729-2	chr17	7913629	7913829	+	839.1666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12271.0	NM_145968	72536.0	Mm.119680	NM_145968	ENSMUSG00000033450	Tagap	2610315E15Rik|TRD|Tcd-1|Tcd1|Tcd1a|tcs-1|tcs1	T cell activation Rho GTPase activating protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78341187-1	chr15	78341087	78341287	+	547.0	f1_balb.idr	intron (NM_001358854, intron 7 of 14)	intron (NM_001358854, intron 7 of 14)	-7412.0	NR_106138	102466845.0		NR_106138	ENSMUSG00000099059	Mir7676-2	Gm27790|mmu-mir-7676-2	microRNA 7676-2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-69361497-4	chr12	69361386	69361586	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-4310.0	NM_025441	66244.0	Mm.46705	NM_025441	ENSMUSG00000020982	Nemf	1500011I12Rik|4933405E14Rik|Sdccag1	nuclear export mediator factor	protein-coding	4.82826851562808	4.79653945868026	4.82254332945528	4.74044041456709	4.09587267888133	4.78084854472388	4.81488892622815	4.1810048090635	-0.373811524411497	0.304352479793138	0.805978749093158
Merged-chr18-66410642-4	chr18	66410539	66410739	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47965.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-33684826-4	chr17	33684741	33684941	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_145486)	TTS (NM_145486)	617.0	NM_001109913	76936.0	Mm.311439	NM_029804	ENSMUSG00000059208	Hnrnpm	2610023M21Rik|AA409009|Hnrpm|mKIAA4193	heterogeneous nuclear ribonucleoprotein M	protein-coding	2.7328954653226	2.26291566449362	1.42127922875263	2.25631751514383	2.4568010102039	2.41644568683536	2.56212544565549	2.38151532111673	0.428778247009366	0.621758996045347	0.979537295922371
Merged-chr15-74922466-4	chr15	74922370	74922570	+	999.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32581.0	NM_001164039	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-119893850-2	chr9	119893750	119893950	+	714.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-1045.0	NM_026236	67561.0	Mm.104789	NM_026236	ENSMUSG00000032512	Wdr48	8430408H12Rik|Uaf1|mKIAA1449	WD repeat domain 48	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-85159414-2	chr6	85159314	85159514	+	565.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21650.0	NM_011467	20751.0	Mm.28393	NM_011467	ENSMUSG00000033735	Spr	AA409688|Gm10328	sepiapterin reductase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-45751881-3	chr11	45751719	45751919	+	794.266663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56264.0	NR_045876	100009664.0	Mm.415439	NR_045876		F630206G17Rik	-	RIKEN cDNA F630206G17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-135212480-4	chr3	135212350	135212550	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173762)	promoter-TSS (NM_173762)	-113.0	NM_173762	229841.0	Mm.161470	NM_173762	ENSMUSG00000045328	Cenpe	312kDa|AU019344|BC049989|C530022J18|CENP-E|Kif10	centromere protein E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123457470-2	chr5	123457370	123457570	+	775.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_133917, exon 17 of 17)	3' UTR (NM_133917, exon 17 of 17)	24631.0	NM_029594	76399.0	Mm.75049	NM_029594	ENSMUSG00000029437	Il31	1700013B14Rik	interleukin 31	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-128983081-2	chr4	128982981	128983181	+	619.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-10143.0	NM_016895	11637.0	Mm.29460	NM_016895	ENSMUSG00000028792	Ak2	Ak-2|D4Ertd220e	adenylate kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-6450899-4	chr2	6450813	6451013	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	98177.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91458061-2	chr2	91457961	91458161	+	554.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172668, intron 1 of 37)	CpG	530.0	NM_001145857	228357.0	Mm.275149	NM_172668	ENSMUSG00000027253	Lrp4	6430526J12Rik|D230026E03|Megf7|mdig	low density lipoprotein receptor-related protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-121007967-2	chr2	121007867	121008067	+	577.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010761)	promoter-TSS (NM_010761)	-441.0	NM_010761	17151.0	Mm.7838	NM_010761	ENSMUSG00000023572	Ccndbp1	AU022347|DIP1|GCIP|Maid|SECC-8|SSEC-8	cyclin D-type binding-protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-67459573-1	chr7	67459473	67459673	+	626.0	f1_c57bl6.idr	Intergenic	Intergenic	-86715.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	0.671653350088289	1.12094271690056	0.515738475620498	1.15526365161979	0.833807517464064	1.78915411561092	0.518552729225822	0.507539580349502	0.617489599129003	0.697146571955861	0.997929106458421
Merged-chr8-57596096-4	chr8	57595980	57596180	+	965.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167981, intron 1 of 11)	intron (NM_001167981, intron 1 of 11)	-55673.0	NR_040698	100502619.0	Mm.393851	NR_040698		AW046200	-	expressed sequence AW046200	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-94410078-3	chr11	94409975	94410175	+	749.333374	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009783, intron 35 of 35)	intron (NM_009783, intron 35 of 35)	-17099.0	NM_029600	76408.0	Mm.23942	NM_029600	ENSMUSG00000020865	Abcc3	1700019L09Rik|ABC31|MLP2|MOAT-D|MRP3	ATP-binding cassette, sub-family C (CFTR/MRP), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-25927734-2	chr17	25927634	25927834	+	729.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001291025, exon 12 of 12)	exon (NM_001291025, exon 12 of 12)	-8020.0	NM_139154	224624.0	Mm.328872	NM_139154	ENSMUSG00000025730	Rab40c	RAR3	Rab40C, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-148478771-3	chr6	148478682	148478882	+	800.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34430.0	NM_001347518	387314.0	Mm.137858	NM_198967	ENSMUSG00000030306	Tmtc1	Arg99|BC023818	transmembrane and tetratricopeptide repeat containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-47973387-1	chr2	47973287	47973487	+	644.0	f1_c57bl6.idr	Intergenic	L1_Mus1|LINE|L1	-840722.0	NM_007396	11480.0	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-57094520-2	chr17	57094420	57094620	+	915.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_033508, intron 3 of 3)	B3|SINE|B2	-6738.0	NM_009451	22153.0	Mm.7420	NM_009451	ENSMUSG00000062591	Tubb4a	AI325297|M(beta)4|Tubb|Tubb4	tubulin, beta 4A class IVA	protein-coding	1.70371236432885	1.56564410399003	1.8573483979672	1.47152103984893	1.13339726991153	1.41955171990228	0.991297041200276	1.71207933465145	-1.11390762862336	0.346643678109085	0.847437850938575
Merged-chr1-82795832-2	chr1	82795732	82795932	+	874.0833130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-27376.0	NM_025453	66261.0	Mm.46325	NM_025453	ENSMUSG00000026149	Tm4sf20	1810018L02Rik	transmembrane 4 L six family member 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-42133524-2	chr11	42133424	42133624	+	785.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001359035, exon 10 of 10)	exon (NM_001359035, exon 10 of 10)	48674.0	NM_001359035	14394.0	Mm.439668	NM_010250	ENSMUSG00000010803	Gabra1	GABAA-alpha1|GABAAR-alpha1|Gabra-1	gamma-aminobutyric acid (GABA) A receptor, subunit alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-70968371-4	chr17	70968257	70968457	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22159.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111309399-3	chr12	111309265	111309465	+	939.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183016, intron 21 of 36)	intron (NM_183016, intron 21 of 36)	38269.0	NM_033603	93835.0	Mm.197639	NM_033603	ENSMUSG00000021278	Amn	-	amnionless	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-116143731-1	chr9	116143631	116143831	+	729.0	f1_balb.idr	intron (NM_029575, intron 1 of 6)	intron (NM_029575, intron 1 of 6)	31632.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127313025-4	chr10	127312928	127313128	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1242.0	NM_001171582	216443.0	Mm.28173	NM_001003913	ENSMUSG00000040354	Mars	Metrs|Mtrns	methionine-tRNA synthetase	protein-coding	4.99909505151468	5.29031405129147	5.27028045474723	5.6268647158345	5.15137449236625	5.32449904645749	5.40098288695838	5.73831691690178	0.123850009623359	0.671941068047079	0.994295938730731
Merged-chr5-132426073-3	chr5	132425970	132426170	+	944.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177047, intron 1 of 19)	ORR1E|LTR|ERVL-MaLR	116273.0	NM_177047	319974.0	Mm.409595	NM_177047	ENSMUSG00000029673	Auts2	2700063G02Rik|A730011F23Rik|D830032G16Rik	autism susceptibility candidate 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-59003443-4	chr13	59003349	59003549	+	964.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025074, intron 13 of 17)	intron (NM_001025074, intron 13 of 17)	195752.0	NM_001025074	18212.0	Mm.130054	NM_008745	ENSMUSG00000055254	Ntrk2	GP145-TrkB/GP95-TrkB|Tkrb|trk-B|trkB	neurotrophic tyrosine kinase, receptor, type 2	protein-coding	-0.585750136378803	-0.574740085344961	-0.578352923889335	-0.0496394507928595	-0.585064430927764	-0.573924946871814	-0.577556558535478	-0.0428439794746447	0.0283831331496041	0.992068125565279	1
Merged-chr12-59032287-3	chr12	59032170	59032370	+	942.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	18879.0	NM_025656	66603.0	Mm.35353	NM_025656	ENSMUSG00000060121	Gemin2	Sip1|gemin-2	gem nuclear organelle associated protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-120926407-3	chr9	120926308	120926508	+	872.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040753, intron 2 of 2)	intron (NR_040753, intron 2 of 2)	4394.0	NR_040753	78060.0	Mm.463884	NR_040753	ENSMUSG00000086365	4930593C16Rik	-	RIKEN cDNA 4930593C16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-57013597-2	chr19	57013497	57013697	+	971.583374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5022.0	NM_001177797	226250.0	Mm.226284	NM_146102	ENSMUSG00000025083	Afap1l2	AU041783|C86904|mKIAA1914	actin filament associated protein 1-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88655545-2	chr3	88655445	88655645	+	655.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2403.0	NM_181817	242093.0	Mm.269130	NM_181817	ENSMUSG00000049741	Rxfp4	GPCR142|Gpr100|Rln3r2|SALPR	relaxin family peptide receptor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-21050491-2	chr5	21050391	21050591	+	647.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011203, intron 1 of 17)	L2|LINE|L2	5420.0	NM_001356591	19248.0	Mm.319117	NM_011203	ENSMUSG00000028771	Ptpn12	P19-PTP|PTP-P19|PTP-PEST|PTPG1	protein tyrosine phosphatase, non-receptor type 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101268728-2	chr15	101268584	101268784	+	964.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_010444, intron 1 of 6)	intron (NM_010444, intron 1 of 6)	1838.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	2.02305741492653	2.0266123242549	1.82179451510257	2.02481968007448	2.21425962976474	2.2857916761773	1.83510864880244	1.2320125920804	-0.032855953628117	0.973731844018613	0.998431161219273
Merged-chr2-150656288-2	chr2	150656188	150656388	+	614.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_080575, intron 2 of 13)	intron (NM_080575, intron 2 of 13)	-11206.0	NR_040331	109344.0	Mm.440012	NR_040331	ENSMUSG00000087406	E130215H24Rik	-	RIKEN cDNA E130215H24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-81787546-4	chr17	81787456	81787656	+	853.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49169.0	NM_011406	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-53997084-4	chr5	53996980	53997180	+	992.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1443.0	NM_001081103	116873.0	Mm.265985	NM_054083	ENSMUSG00000039156	Stim2	-	stromal interaction molecule 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-56657778-2	chr3	56657678	56657878	+	562.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3B|LINE|L1	-474077.0	NM_030595	26422.0	Mm.384353	NM_030595	ENSMUSG00000027799	Nbea	Lyst2|mKIAA1544	neurobeachin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-8991046-4	chr3	8990939	8991139	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	13165.0	NM_001357073	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	2.56079659686291	1.89188711779737	2.00520062118629	2.53101778246353	2.72054495721063	1.4236829713105	2.42043132356435	2.4497617418146	0.13599305288224	0.88055571385423	0.998431161219273
Merged-chr15-77775710-3	chr15	77775604	77775804	+	778.266663	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022410, intron 21 of 40)	intron (NM_022410, intron 21 of 40)	-18694.0	NM_001357895	239552.0	Mm.125650	NM_001081970	ENSMUSG00000056656	Apol8	9830006J20Rik|APOL-II|Apol2	apolipoprotein L 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-54579844-3	chr14	54579731	54579931	+	840.505554	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2170.0	NM_010590	16475.0	Mm.100253	NM_010590	ENSMUSG00000022178	Ajuba	Jub	ajuba LIM protein	protein-coding	2.50809968958386	3.28925756978489	3.17994037601831	3.16238531438671	3.02682706327634	2.44145581947891	1.49143383644396	1.93474412839951	-1.31959916724805	0.0992960022605634	0.490156408286484
Merged-chr18-61090852-4	chr18	61090766	61090966	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14706.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-51016647-2	chr6	51016539	51016739	+	560.0	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	240524.0	NR_045984	319981.0	Mm.131454	NR_045984	ENSMUSG00000107667	C530044C16Rik	-	RIKEN cDNA C530044C16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-57454193-2	chr2	57454093	57454293	+	559.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	215811.0	NM_010274	14571.0	Mm.3711	NM_010274	ENSMUSG00000026827	Gpd2	AA408484|AI448216|AU021455|AW494132|GPDH|Gdm1|Gpd-m|Gpdh-m|TISP38	glycerol phosphate dehydrogenase 2, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-130896583-4	chr4	130896503	130896703	+	831.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16731.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-111945098-2	chr8	111944994	111945194	+	877.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026693, intron 3 of 3)	intron (NM_026693, intron 3 of 3)	4391.0	NM_026693	93739.0	Mm.371666	NM_026693	ENSMUSG00000031950	Gabarapl2	0610012F20Rik|2900019O08Rik|AI173605|GATE-16|Gef2	gamma-aminobutyric acid (GABA) A receptor-associated protein-like 2	protein-coding	0.884807999112639	0.407273715593522	1.10352241739464	0.392703146931468	0.383664227020961	0.789507934324481	1.11656732747501	0.393816680205314	-0.128089369647847	0.944074949142651	1
Merged-chr5-113632114-2	chr5	113632014	113632214	+	762.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008153, intron 1 of 2)	intron (NM_008153, intron 1 of 2)	11489.0	NM_001359060	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-102407091-1	chr11	102406991	102407191	+	1000.0	f0_balb.idr	intron (NM_026542, intron 1 of 11)	intron (NM_026542, intron 1 of 11)	426.0	NM_026542	68066.0	Mm.44226	NM_026542	ENSMUSG00000018677	Slc25a39	3010027G13Rik|D11Ertd333e	solute carrier family 25, member 39	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5601490-2	chr17	5601390	5601590	+	644.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	ORR1B1|LTR|ERVL-MaLR	108890.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-35768545-4	chr16	35768418	35768618	+	981.1083369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153550, intron 1 of 8)	intron (NM_153550, intron 1 of 8)	838.0	NM_153550	224132.0	Mm.24094	NM_153550	ENSMUSG00000022848	Dirc2	RCC4	disrupted in renal carcinoma 2 (human)	protein-coding	0.976056435282023	0.842829949325437	1.99646231672112	1.46170864002446	1.59163478630644	0.846310488287949	1.05224119907594	1.58378963081133	-0.347103493747857	0.796931155175972	0.998431161219273
Merged-chr11-3963838-7	chr11	3963676	3963876	+	984.285706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022889)	promoter-TSS (NM_022889)	-199.0	NM_022889	64934.0	Mm.28659	NM_022889	ENSMUSG00000020430	Pes1	-	pescadillo ribosomal biogenesis factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-106539138-2	chr8	106539038	106539238	+	912.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_007665, exon 7 of 16)	exon (NM_007665, exon 7 of 16)	28286.0	NM_001037809	12560.0	Mm.4658	NM_007665	ENSMUSG00000061048	Cdh3	AI385538|Cadp|Cdhp|P-cadherin|Pcad	cadherin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-62830069-2	chr5	62829969	62830169	+	763.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001170705, intron 4 of 8)	intron (NM_001170705, intron 4 of 8)	16246.0	NM_001170705	100322896.0	Mm.479821	NM_001170705	ENSMUSG00000090326	Dthd1	Gm17384	death domain containing 1	protein-coding	-0.637164521402753	-0.00107041937844576	-0.629648525983824	-0.198839237686859	-0.636466887126851	-0.625159782951639	-0.628840665121009	-0.631980662164451	-3.34733352433029	0.231753354118799	1
Merged-chr11-55132158-2	chr11	55132058	55132258	+	702.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172258, intron 7 of 10)	L1MB4|LINE|L1	19548.0	NM_172258	215332.0	Mm.87054	NM_172258	ENSMUSG00000049491	Slc36a3	PAT3|TRAMD2|tramdorin2	solute carrier family 36 (proton/amino acid symporter), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-47450221-2	chr6	47450189	47450389	+	668.791626	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-3443.0	NM_001355551	26965.0	Mm.87611	NM_012042	ENSMUSG00000029686	Cul1	Cul-1	cullin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-23895797-2	chr18	23895697	23895897	+	663.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-58891.0	NM_027007	69256.0	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-71114078-4	chr12	71113982	71114182	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029227, intron 2 of 4)	intron (NM_029227, intron 2 of 4)	2654.0	NM_029227	75266.0	Mm.402075	NM_029227	ENSMUSG00000021078	Tomm20l	4930553D19Rik	translocase of outer mitochondrial membrane 20-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-32709065-2	chr18	32708965	32709165	+	718.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045381, intron 4 of 4)	intron (NR_045381, intron 4 of 4)	-106318.0	NM_021367	53603.0	Mm.143716	NM_021367	ENSMUSG00000024379	Tslp	-	thymic stromal lymphopoietin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-32198726-2	chr5	32198626	32198826	+	587.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33982.0	NM_030072	665270.0	Mm.160067	NM_030072	ENSMUSG00000029134	Plb1	4632413E21Rik|4930433E17Rik|4930539A06Rik|BC033606	phospholipase B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-116065763-2	chr2	116065666	116065866	+	683.75	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_001159568)	promoter-TSS (NM_001159568)	-708.0	NM_010825	17536.0	Mm.247566	NM_010825	ENSMUSG00000027210	Meis2	A430109D20Rik|Mrg1|Stra10	Meis homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-70199212-2	chr10	70199112	70199312	+	713.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10B|LTR|ERVL	-5452.0	NM_001304739	69563.0	Mm.64672	NM_001304739	ENSMUSG00000019933	Mrln	2310015B20Rik|Linc-RAM|Mln	myoregulin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-35938947-4	chr16	35938856	35939056	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001013371)	promoter-TSS (NM_001013371)	71.0	NM_001013371	209200.0	Mm.390852	NM_001013371	ENSMUSG00000049502	Dtx3l	AU042200|BC023741	deltex 3-like, E3 ubiquitin ligase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71292120-3	chr17	71292042	71292242	+	973.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357337, intron 2 of 7)	intron (NM_001357337, intron 2 of 7)	18869.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-57016252-2	chr17	57016152	57016352	+	572.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4964.0	NM_133801	98053.0	Mm.24632	NM_133801	ENSMUSG00000002658	Gtf2f1	2810405L04Rik|C76800|RAP74	general transcription factor IIF, polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-63643663-2	chr13	63643563	63643763	+	680.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70203.0	NM_001328514	19206.0	Mm.228798	NM_008957	ENSMUSG00000021466	Ptch1	A230106A15Rik|Ptc|Ptc1|Ptch|mes|wig	patched 1	protein-coding	0.865364942152971	0.999398834092241	1.30665570987618	0.516588362310294	1.05584716348408	0.529819665965904	0.523138626956409	0.517475572903093	-1.62526430318967	0.358674585319219	1
Merged-chr12-87415568-4	chr12	87415472	87415672	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22185.0	NR_037228	100526546.0		NR_037228	ENSMUSG00000105428	Mir3068	mir-3068|mmu-mir-3068	microRNA 3068	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80802789-2	chr10	80802689	80802889	+	672.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013651, intron 4 of 8)	intron (NM_013651, intron 4 of 8)	-2459.0	NM_007445	11705.0	Mm.376094	NM_007445	ENSMUSG00000035262	Amh	MIS	anti-Mullerian hormone	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94277932-1	chr10	94277832	94278032	+	611.5	f0_balb.idr	Intergenic	Intergenic	20771.0	NR_033209	215472.0	Mm.255656	NM_174999	ENSMUSG00000053420	Gm4792	E130012K09|EG215472	predicted gene 4792	ncRNA	1.71715376273802	0.645859777993284	0.842520393240982	1.12258245752824	1.53345203930152	0.648614240495578	0.636255825975356	0.988476302244808	-0.558456409571815	0.717806200602301	0.998431161219273
Merged-chr8-39976672-1	chr8	39976572	39976772	+	549.0	f1_balb.idr	Intergenic	Intergenic	310281.0	NM_030610	80857.0	Mm.425526	NM_030610	ENSMUSG00000031603	Fgf20	-	fibroblast growth factor 20	protein-coding	1.04250547662715	1.21919623301337	1.1659332278734	2.22875501532474	3.23118371057149	3.2153377922585	4.05900289277268	2.08402535971481	3.75790069903014	0.000172887115463423	0.0048117250878082
Merged-chr5-80225024-1	chr5	80224924	80225124	+	897.0	f1_c57bl6.idr	Intergenic	L1Md_F|LINE|L1	-795547.0	NM_001347367	319387.0	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-47890924-5	chr19	47890816	47891016	+	887.6333619999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25122.0	NM_026619	68214.0	Mm.63791	NM_026619	ENSMUSG00000025069	Gsto2	1700020F09Rik|4930425C18Rik|GSTO 2-2	glutathione S-transferase omega 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-84086751-2	chr14	84086651	84086851	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2B|LINE|L1	-11461.0	NR_153783	102635012.0	Mm.399509	NR_153783	ENSMUSG00000115043	Gm32455	-	predicted gene, 32455	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-137032110-2	chr5	137032010	137032210	+	674.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001039385, exon 2 of 2)	exon (NM_001039385, exon 2 of 2)	1815.0	NM_001039385	381677.0	Mm.389697	NM_001039385	ENSMUSG00000037428	Vgf	Gm1052	VGF nerve growth factor inducible	protein-coding	-0.0937779016487682	-0.0719071661104309	-0.0789897019682585	0.814103220689335	-0.0923900531307111	-0.0703212145392541	-0.0774209231287954	0.823999795812423	0.028149547091201	0.990511584420544	1
Merged-chr1-91403890-1	chr1	91403790	91403990	+	548.0	f1_balb.idr	TTS (NR_026924)	TTS (NR_026924)	2139.0	NR_026924	67086.0	Mm.396158	NR_026924	ENSMUSG00000100253	1700020N18Rik	-	RIKEN cDNA 1700020N18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-100881857-4	chr10	100881757	100881957	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-140222.0	NR_152765	102639396.0	Mm.404529	NR_152765		Gm35722	-	predicted gene, 35722	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-24931681-3	chr10	24931583	24931783	+	643.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4213.0	NM_007482	11846.0	Mm.154144	NM_007482	ENSMUSG00000019987	Arg1	AI|AI256583|Arg-1|PGIF	arginase, liver	protein-coding	0.841486741679146	1.70686089265856	1.54072150083974	0.520365191243732	0.850267693570269	0.546427745523349	0.758305231058805	0.522160296617935	-2.69036692225573	0.0947318365389687	0.476479590543289
Merged-chr2-30772963-7	chr2	30772863	30773063	+	945.8095089999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28774.0	NM_198000	73598.0	Mm.34166	NM_198000	ENSMUSG00000044320	1700001O22Rik	1700113K14Rik|4930549G18Rik	RIKEN cDNA 1700001O22 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-66266342-3	chr14	66266191	66266391	+	868.2222289999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	14761.0	NM_001162366	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	2.75108309508375	3.39056785538527	2.3618427551107	3.96121191496641	2.31671207487451	1.81286807758101	3.96496513165347	1.384729237663	-0.74254676932615	0.396750247232032	0.883374266910167
Merged-chr5-90930771-3	chr5	90930672	90930872	+	582.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026788)	promoter-TSS (NM_026788)	-424.0	NM_026788	665563.0	Mm.153030	NM_026788	ENSMUSG00000029376	Mthfd2l	1110019K23Rik|C630010D07Rik	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-107358696-2	chr10	107358596	107358796	+	614.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039354, intron 2 of 5)	intron (NM_001039354, intron 2 of 5)	86302.0	NM_001284329	108030.0	Mm.268025	NM_001033223	ENSMUSG00000019906	Lin7a	AI848705|LIN-7A|MALS-1|TIP-33|Veli|Veli1	lin-7 homolog A (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71358256-2	chr8	71358156	71358356	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_015742, intron 37 of 39)	intron (NM_015742, intron 37 of 39)	-8592.0	NM_001145780	67023.0	Mm.41890	NM_025917	ENSMUSG00000002395	Use1	2010315L10Rik|5730403H22Rik|AV002165|D12|Ed2|Q-snare|p31	unconventional SNARE in the ER 1 homolog (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-47360631-1	chr14	47360531	47360731	+	858.0	f0_balb.idr	Intergenic	Intergenic	-13229.0	NM_010705	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	2.73970661369011	3.166311317104	2.03259733647345	3.05617926286577	3.4580536899064	2.88993276481409	1.82332533503716	2.59312038751354	0.029160656573512	0.970008341374233	0.998431161219273
Merged-chr16-62814023-3	chr16	62813910	62814110	+	900.638916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026588)	promoter-TSS (NM_026588)	-666.0	NM_026588	68159.0	Mm.386793	NM_026588	ENSMUSG00000047854	Stx19	A030009B12Rik	syntaxin 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-18940388-2	chr8	18940288	18940488	+	874.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_176951, intron 4 of 6)	MLT1H|LTR|ERVL-MaLR	10483.0	NM_001286469	319581.0	Mm.111354	NM_176951	ENSMUSG00000039814	Xkr5	5430438H03Rik|XRG5	X-linked Kx blood group related 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-155654490-2	chr4	155654421	155654621	+	665.25	f0_balb.idr|f1_balb.idr	TTS (NM_001256107)	TTS (NM_001256107)	-1137.0	NM_011985	26561.0	Mm.29373	NM_011985	ENSMUSG00000029061	Mmp23	CA-MMP	matrix metallopeptidase 23	protein-coding	1.43078128927806	0.897583114699519	0.881380401770419	1.51483811205471	1.81148151899729	1.87384305182057	0.884985360219659	1.63697221006089	1.38106456855344	0.306329537095065	0.806865344318695
Merged-chr15-89400849-3	chr15	89400733	89400933	+	887.288879	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162880, intron 1 of 2)	MTE-int|LTR|ERVL-MaLR	9430.0	NM_001162882	75459.0	Mm.45462	NM_001162880	ENSMUSG00000078938	Syce3	1700007E06Rik|TSEG-2|TSEG2	synaptonemal complex central element protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-84206308-2	chr12	84206208	84206408	+	565.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163501, intron 1 of 12)	intron (NM_001163501, intron 1 of 12)	-12293.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-123524070-2	chr4	123523970	123524170	+	546.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199137, intron 5 of 92)	intron (NM_001199137, intron 5 of 92)	-92350.0	NR_105824	102465214.0		NR_105824	ENSMUSG00000099005	Mir6398	Gm27657|mmu-mir-6398	microRNA 6398	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-3499940-2	chr5	3499840	3500040	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 5 of 7)	Lx10|LINE|L1	-43893.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-5635192-4	chr13	5635096	5635296	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	222896.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-21088534-2	chr11	21088434	21088634	+	706.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20D|LTR|ERVK	-2790.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-12265212-3	chr12	12265086	12265286	+	898.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146119, intron 1 of 11)	intron (NM_001146119, intron 1 of 11)	3047.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	0.686860967001277	0.0106222212434694	0.176426879957573	0.00167888596137897	0.365688610358328	0.011762512429112	0.327823914779174	0.00235822216280851	-0.523175361357563	0.80544415443871	1
Merged-chr17-6272180-3	chr17	6272078	6272278	+	981.7222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033178, intron 1 of 16)	intron (NM_001033178, intron 1 of 16)	1708.0	NM_001033178	77106.0	Mm.381893	NM_001033178	ENSMUSG00000038141	Tmem181a	5930418K15Rik|C76977|Gpr178|Tmem181|mKIAA1423	transmembrane protein 181A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-88274290-3	chr8	88274198	88274398	+	871.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007406, intron 1 of 27)	intron (NM_007406, intron 1 of 27)	1895.0	NM_007406	11513.0	Mm.288206	NM_007406	ENSMUSG00000031659	Adcy7	AA407758	adenylate cyclase 7	protein-coding	0.159129297823627	1.07073507560491	0.175290689123143	0.755717471373459	0.160643239035905	0.184795309589818	0.177009043818605	0.763238074366496	-1.47182001767433	0.478316252609424	1
Merged-chr10-122570055-4	chr10	122570001	122570201	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040616)	promoter-TSS (NR_040616)	-210.0	NR_040616	319272.0	Mm.411763	NR_040616	ENSMUSG00000112095	A130077B15Rik	-	RIKEN cDNA A130077B15 gene	ncRNA	6.30846859394874	6.4618723801171	6.01637313776028	6.15616297178785	6.01108364009343	6.02067647419103	5.567435958843	6.12970289860054	-0.322215429136382	0.161690767018465	0.62258209970717
Merged-chr16-54789440-2	chr16	54789340	54789540	+	581.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F|LINE|L1	493797.0	NM_178720	239852.0	Mm.245045	NM_178720	ENSMUSG00000064310	Zpld1	9430016A21Rik	zona pellucida like domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-104178381-4	chr13	104178270	104178470	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361539)	promoter-TSS (NM_001361539)	96.0	NM_025879	66975.0	Mm.272541	NM_025879	ENSMUSG00000021711	Trappc13	2410002O22Rik|2610524F24Rik|AI451892|AU017229	trafficking protein particle complex 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56958051-4	chr17	56957971	56958171	+	985.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175731, intron 4 of 5)	intron (NM_175731, intron 4 of 5)	-22683.0	NM_022328	64144.0	Mm.148748	NM_022328	ENSMUSG00000024212	Mllt1	AA407901|BAM11|ENL|LTG19	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-101963735-2	chr5	101963635	101963835	+	798.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 5 of 66)	intron (NM_172882, intron 5 of 66)	106186.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-75370591-2	chr18	75370491	75370691	+	990.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001042660, intron 1 of 3)	intron (NM_001042660, intron 1 of 3)	3226.0	NM_001042660	17131.0	Mm.34407	NM_008543	ENSMUSG00000025880	Smad7	Madh7	SMAD family member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-90397595-2	chr16	90397495	90397695	+	576.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_015755, intron 1 of 10)	intron (NM_015755, intron 1 of 10)	11198.0	NM_015755	26559.0	Mm.125874	NM_015755	ENSMUSG00000053414	Hunk	Bstk1|Mak-v	hormonally upregulated Neu-associated kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-133336636-2	chr3	133336536	133336736	+	589.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001293641, intron 5 of 11)	intron (NM_001293641, intron 5 of 11)	26526.0	NM_001293641	74776.0	Mm.210305	NM_146141	ENSMUSG00000028013	Ppa2	1110013G13Rik|Sid6306	pyrophosphatase (inorganic) 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-51984919-3	chr14	51984895	51985095	+	776.266663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145921, intron 1 of 23)	CpG	162.0	NM_198249	268739.0	Mm.9239	NM_198249	ENSMUSG00000004562	Arhgef40	E130112L23Rik|Gm669|Solo	Rho guanine nucleotide exchange factor (GEF) 40	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-53451052-2	chr5	53450952	53451152	+	571.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-104727.0	NM_001080928	19664.0	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-121570879-4	chr3	121570740	121570940	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38496.0	NM_145394	213603.0	Mm.33062	NM_145394	ENSMUSG00000039865	Slc44a3	BC010552	solute carrier family 44, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101851919-4	chr7	101851813	101852013	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303239, intron 2 of 5)	intron (NM_001303239, intron 2 of 5)	5277.0	NM_001303239	14276.0	Mm.439666	NM_008035	ENSMUSG00000032725	Folr2	FBP2|FR-P3|FR-beta|Folbp-2|Folbp2	folate receptor 2 (fetal)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105408512-2	chr8	105408412	105408612	+	851.666626	f1_balb.idr|f1_c57bl6.idr	exon (NM_177791, exon 2 of 17)	exon (NM_177791, exon 2 of 17)	4990.0	NM_177791	279499.0	Mm.67628	NM_177791	ENSMUSG00000051648	Kctd19	4922504H04Rik	potassium channel tetramerisation domain containing 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80403019-4	chr7	80402921	80403121	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011046)	promoter-TSS (NM_011046)	-209.0	NM_011046	18550.0	Mm.5241	NM_011046	ENSMUSG00000030530	Furin	9130404I01Rik|Fur|PACE|Pcsk3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84984822-4	chr8	84984663	84984863	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5832.0	NM_133255	170833.0	Mm.247775	NM_133255	ENSMUSG00000052566	Hook2	A630054I03Rik	hook microtubule tethering protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127517364-1	chr10	127517264	127517464	+	584.0	f1_balb.idr	TTS (NM_001098789)	TTS (NM_001098789)	2425.0	NM_001098789	407790.0	Mm.336856	NM_001098789	ENSMUSG00000040280	Ndufa4l2	BC064011	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4-like 2	protein-coding	0.390449199218064	0.412078599896594	0.856109375500771	1.02418930311472	0.662310195166451	0.770615326467724	0.406559926302322	0.827889462169823	-0.180332128814592	0.917100301802574	1
Merged-chr5-67394134-3	chr5	67394037	67394237	+	783.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001164806, exon 5 of 5)	3' UTR (NM_001164806, exon 5 of 5)	33662.0	NM_001164806	666938.0	Mm.101339	NM_001164806	ENSMUSG00000092060	Bend4	D330027G24Rik|EG666938	BEN domain containing 4	protein-coding	-0.294083384950798	-0.277963382818132	0.430175288204581	-0.287290034214969	-0.293070061983337	-0.276782190008417	0.44311158986884	-0.286577643912737	0.0410571026119648	0.987250810110592	1
Merged-chr7-98818745-4	chr7	98818641	98818841	+	982.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16371.0	NM_001285794	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-68731867-2	chr10	68731767	68731967	+	574.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177794, intron 1 of 5)	intron (NM_177794, intron 1 of 5)	8121.0	NM_177794	327766.0	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-58999292-4	chr13	58999178	58999378	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025074, intron 13 of 17)	intron (NM_001025074, intron 13 of 17)	191581.0	NM_001025074	18212.0	Mm.130054	NM_008745	ENSMUSG00000055254	Ntrk2	GP145-TrkB/GP95-TrkB|Tkrb|trk-B|trkB	neurotrophic tyrosine kinase, receptor, type 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-110627126-2	chr8	110627026	110627226	+	802.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_151675, intron 1 of 17)	MTC|LTR|ERVL-MaLR	8559.0	NR_151675	234729.0	Mm.274894	NM_146216	ENSMUSG00000010936	Vac14	AA959718|BC032215|D8Wsu151e|Tax1bp2|Trx|ingls	Vac14 homolog (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-66088682-2	chr9	66088582	66088782	+	986.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019727, intron 14 of 14)	intron (NM_019727, intron 14 of 14)	-18951.0	NM_001025612	382083.0	Mm.477103	NM_001025612	ENSMUSG00000039452	Snx22	Gm1120	sorting nexin 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-3283001-2	chr2	3282901	3283101	+	574.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-1211.0	NM_008708	18108.0	Mm.65021	NM_008708	ENSMUSG00000026643	Nmt2	A930001K02Rik|AI605445|AU044698|hNMT-2	N-myristoyltransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-13818697-4	chr16	13818616	13818816	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010946)	promoter-TSS (NM_010946)	-535.0	NM_010946	18203.0	Mm.380410	NM_010946	ENSMUSG00000022681	Ntan1	PNAA|PNAD	N-terminal Asn amidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-33281928-2	chr4	33281828	33282028	+	937.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR33|LTR|ERVK	-28383.0	NM_011884	24018.0	Mm.240024	NM_011884	ENSMUSG00000028274	Rngtt	AU020997|HCE|MCE1	RNA guanylyltransferase and 5'-phosphatase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-25984303-4	chr15	25984193	25984393	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144523)	promoter-TSS (NM_144523)	-73.0	NM_144523	52521.0	Mm.29145	NM_144523	ENSMUSG00000052253	Zfp622	1110033B05Rik|D15Ertd806e|ZPR9|Znf622	zinc finger protein 622	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-136707583-3	chr1	136707486	136707686	+	657.533325	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_037986, intron 2 of 4)	ORR1B2|LTR|ERVL-MaLR	11375.0	NR_037986	100503474.0	Mm.428276	NR_037986		Platr22	Gm16880	pluripotency associated transcript 22	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-70097988-4	chr10	70097897	70098097	+	823.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111121, intron 1 of 8)	CpG	876.0	NM_001111121	76551.0	Mm.281741	NM_001111121	ENSMUSG00000048701	Ccdc6	2810012H18Rik|AA536681|AA960498|AW061011	coiled-coil domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-73772136-3	chr6	73772035	73772235	+	826.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-301114.0	NR_108032	73408.0	Mm.233629	NR_108032	ENSMUSG00000107408	1700065L07Rik	-	RIKEN cDNA 1700065L07 gene	ncRNA	1.02879930337691	1.30818819832134	1.5931844273805	1.08346853915749	1.03706519872884	0.76314824547203	1.60818971294946	0.740478164196463	-0.710855276033742	0.610067777364507	0.974992433107985
Merged-chr10-40347919-3	chr10	40347870	40348070	+	896.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1338.0	NM_001291817	78334.0	Mm.200924	NM_198164	ENSMUSG00000038481	Cdk19	2700084L06Rik|AI845279|AW228747|CDK11|Cdc2l6|mKIAA1028	cyclin-dependent kinase 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-88505266-3	chr15	88505162	88505362	+	938.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-95040.0	NM_027306	70073.0	Mm.45306	NM_027306	ENSMUSG00000054117	Zdhhc25	1700030J15Rik	zinc finger, DHHC domain containing 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-90477601-1	chr3	90477501	90477701	+	646.0	f1_c57bl6.idr	intron (NM_026374, intron 3 of 13)	B1F1|SINE|Alu	1400.0	NM_026374	67781.0	Mm.227258	NM_026374	ENSMUSG00000001016	Ilf2	6230405A16Rik|TEG-267|Tex261|Tex267	interleukin enhancer binding factor 2	protein-coding	-0.884151943040017	-0.86624766296593	-0.874346483115882	-0.877999885265216	-0.883229761593409	-0.862865047594633	0.225856448367219	-0.877358843395171	3.5762970005776	0.2292649794022	1
Merged-chr11-75568300-2	chr11	75568200	75568400	+	702.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199284, intron 10 of 13)	intron (NM_001199284, intron 10 of 13)	16871.0	NR_039553	100628624.0		NR_039553	ENSMUSG00000093100	Mir3971	mmu-mir-3971|mu-mir-3971	microRNA 3971	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-119809123-4	chr13	119809047	119809247	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-18025.0	NM_001302550	72465.0	Mm.139115	NM_028245	ENSMUSG00000094870	Zfp131	2610109I01Rik|AW558871|Znf131	zinc finger protein 131	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-107810591-4	chr13	107810479	107810679	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 2 of 14)	intron (NM_145456, intron 2 of 14)	79485.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-57395084-4	chr14	57394991	57395191	+	834.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030004, intron 1 of 7)	intron (NM_030004, intron 1 of 7)	3392.0	NM_030004	68631.0	Mm.25539	NM_030004	ENSMUSG00000021947	Cryl1	1110025H08Rik|A230106J09Rik|C85932|gul3dh	crystallin, lambda 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-13590279-4	chr13	13590201	13590401	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010748)	promoter-TSS (NM_010748)	-108.0	NM_010748	17101.0	Mm.342337	NM_010748	ENSMUSG00000019726	Lyst	D13Sfk13|beige|bg	lysosomal trafficking regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-90435370-3	chr6	90435258	90435458	+	874.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6878.0	NM_173775	243538.0	Mm.386876	NM_173775	ENSMUSG00000048794	Cfap100	AW048498|C030041G11Rik|C230069K22Rik|Ccdc37	cilia and flagella associated protein 100	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70330377-1	chr8	70330277	70330477	+	549.0	f1_c57bl6.idr	intron (NM_138647, intron 7 of 7)	intron (NM_138647, intron 7 of 7)	612.0	NM_008107	14559.0	Mm.258280	NM_008107	ENSMUSG00000087408	Gdf1	AI385651|Gdf-1	growth differentiation factor 1	protein-coding	1.12774203400245	0.538492022885301	1.3560376023926	0.990545754211055	0.510053530553328	0.540700978966782	1.27268099118134	0.522319687107288	-1.30373673352619	0.447557277802713	0.914498173479176
Merged-chr13-4667023-4	chr13	4666972	4667172	+	766.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57908.0	NM_018859	56043.0	Mm.251908	NM_018859	ENSMUSG00000045410	Akr1e1	1810061I10Rik|Akr1e2	aldo-keto reductase family 1, member E1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-57102706-2	chr2	57102606	57102806	+	895.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	12332.0	NM_013613	18227.0	Mm.3507	NM_013613	ENSMUSG00000026826	Nr4a2	HZF-3|NOT|Nurr1|RNR-1|TINOR|TINUR	nuclear receptor subfamily 4, group A, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-17474203-1	chr16	17474103	17474303	+	599.0	f0_balb.idr	intron (NM_007764, intron 2 of 2)	intron (NM_007764, intron 2 of 2)	-15474.0	NM_175178	72168.0	Mm.40038	NM_175178	ENSMUSG00000022763	Aifm3	2810401C16Rik|AI840249|Aifl	apoptosis-inducing factor, mitochondrion-associated 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-60268766-3	chr18	60268666	60268866	+	968.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001034859, exon 2 of 2)	3' UTR (NM_001034859, exon 2 of 2)	4501.0	NM_001034859	225594.0	Mm.329460	NM_001034859	ENSMUSG00000068606	Gm4841	EG225594|Ifgga3	predicted gene 4841	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-9123666-2	chr15	9123566	9123766	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013787, intron 5 of 9)	intron (NM_013787, intron 5 of 9)	16788.0	NM_013787	27401.0	Mm.35584	NM_013787	ENSMUSG00000054115	Skp2	4930500A04Rik|FBXL1|FWD1|p45	S-phase kinase-associated protein 2 (p45)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-24439793-2	chr18	24439693	24439893	+	724.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-10623.0	NR_029573	387182.0		NR_029573	ENSMUSG00000065532	Mir187	Mirn187|mir-187|mmu-mir-187	microRNA 187	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-20897527-1	chr13	20897427	20897627	+	959.0	f1_c57bl6.idr	intron (NM_012054, intron 4 of 20)	intron (NM_012054, intron 4 of 20)	103414.0	NM_012054	27052.0	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	-0.995345122585587	-1.23045010975456	-1.08175665923912	-1.24883101704641	-1.25637559728364	-1.22826324570718	-1.23825709357613	-1.08953304235526	-1.12269177104024	0.719666646720277	1
Merged-chr15-97672320-3	chr15	97672207	97672407	+	759.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33515.0	NM_028003	71919.0	Mm.12255	NM_028003	ENSMUSG00000022466	Rpap3	2310042P20Rik|D15Ertd682e	RNA polymerase II associated protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-119069962-3	chr12	119069849	119070049	+	914.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-103528.0	NM_029961	77706.0	Mm.261496	NM_029961	ENSMUSG00000072791	Abcb5	9230106F14Rik	ATP-binding cassette, sub-family B (MDR/TAP), member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-129501146-3	chr6	129501034	129501234	+	895.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138648, intron 2 of 7)	intron (NM_138648, intron 2 of 7)	6031.0	NM_138648	108078.0	Mm.293626	NM_138648	ENSMUSG00000030162	Olr1	LOX-1|SR-EI|Scare1	oxidized low density lipoprotein (lectin-like) receptor 1	protein-coding	2.04338634577182	1.79482779730597	1.20870609286431	1.17512863858221	2.18419771047925	2.48025797812832	3.49943960839494	2.86956175648372	2.82767371301137	0.00351234171273696	0.050813194376308
Merged-chr3-96576857-4	chr3	96576718	96576918	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10017.0	NR_040409	100038464.0	Mm.475126	NR_040409	ENSMUSG00000074398	Gm15441	-	predicted gene 15441	ncRNA	5.54383542614794	5.69461739665075	5.716817671159	6.20525191500341	5.42546335387483	5.7299740100179	5.87251813430195	5.99110715624296	-0.0515707473441354	0.844350569284678	0.998431161219273
Merged-chr17-70119004-3	chr17	70118904	70119104	+	877.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347411, intron 2 of 14)	intron (NM_001347411, intron 2 of 14)	149931.0	NM_001347411	224997.0	Mm.311840	NM_027712	ENSMUSG00000003279	Dlgap1	4933422O14Rik|9630002F18|AI845682|AI848168|BB075781|D17Bwg0511e|GKAP/SAPAP|GKPA/SAPAP|Gkap|Sapap1|mKIAA4162	DLG associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-72719170-2	chr1	72719070	72719270	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7910.0	NM_009084	19981.0	Mm.21529	NM_009084	ENSMUSG00000046330	Rpl37a	-	ribosomal protein L37a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-33961253-2	chr17	33961153	33961353	+	663.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357329, intron 11 of 19)	intron (NM_001357329, intron 11 of 19)	5163.0	NM_001357329	224705.0	Mm.448614	NM_172620	ENSMUSG00000024319	Vps52	ARE1|D130068D18|D430041K17Rik|SAC2|Sacm2l|tclw5	VPS52 GARP complex subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-69260180-4	chr10	69260068	69260268	+	951.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252637, intron 4 of 10)	intron (NM_001252637, intron 4 of 10)	46974.0	NM_001252638	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-91344862-4	chr8	91344763	91344963	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011936, intron 1 of 8)	intron (NM_011936, intron 1 of 8)	31338.0	NM_011936	26383.0	Mm.4375	NM_011936	ENSMUSG00000055932	Fto	AW743446|mKIAA1752	fat mass and obesity associated	protein-coding	3.62370922864957	4.31316175495442	3.08779703221375	3.54550052584289	3.39378700341204	3.22357240641595	3.94237743607512	3.01308789159583	-0.412324090993221	0.461361039273651	0.921033236140643
Merged-chr6-113309860-2	chr6	113309760	113309960	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001282126, exon 2 of 13)	exon (NM_001282126, exon 2 of 13)	2723.0	NM_001282126	78783.0	Mm.356059	NM_030178	ENSMUSG00000001632	Brpf1	4833438B11Rik|4930540D11Rik|Brpf2	bromodomain and PHD finger containing, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-84799342-4	chr2	84799228	84799428	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019949, intron 1 of 3)	intron (NM_019949, intron 1 of 3)	500.0	NM_019949	56791.0	Mm.38261	NM_019949	ENSMUSG00000027078	Ube2l6	2810489I21Rik|RIG-B|UBCH8|Ubce8|Ubcm8	ubiquitin-conjugating enzyme E2L 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-123360383-1	chr7	123360283	123360483	+	587.0	f0_c57.idr	intron (NM_001316713, intron 1 of 19)	intron (NM_001316713, intron 1 of 19)	9532.0	NM_001122643	70497.0	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-7789238-4	chr9	7789127	7789327	+	864.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152989, intron 3 of 5)	intron (NR_152989, intron 3 of 5)	4837.0	NR_049191	100885830.0		NR_049191	ENSMUSG00000093615	Mir5618	Gm23685|mmu-mir-5618	microRNA 5618	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-63411347-2	chr4	63411247	63411447	+	743.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7902.0	NM_001045514	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180387033-4	chr1	180386884	180387084	+	945.6785890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081175, intron 2 of 7)	intron (NM_001081175, intron 2 of 7)	-56435.0	NR_003623	277333.0	Mm.389223	NM_199472		Gm5069	EG277333	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-102640818-3	chr5	102640725	102640925	+	728.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029270, intron 2 of 9)	intron (NM_029270, intron 2 of 9)	-127985.0	NM_001286468	231532.0	Mm.440191	NM_029270	ENSMUSG00000057315	Arhgap24	0610025G21Rik	Rho GTPase activating protein 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133844425-3	chr4	133844385	133844585	+	951.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	30246.0	NM_001285506	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	2.68400037548794	2.56660587093942	2.48345138785364	2.63794684095569	2.61996567066851	1.92454253975053	2.62298699569447	3.33624335633844	0.308067920689973	0.688864416591014	0.996533206832645
Merged-chr6-124309128-4	chr6	124309003	124309203	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_053094, exon 4 of 17)	exon (NM_053094, exon 4 of 17)	4452.0	NM_053094	93671.0	Mm.37426	NM_053094	ENSMUSG00000008845	Cd163	CD163v2|CD163v3	CD163 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81140881-4	chr10	81140860	81141060	+	867.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010731, intron 1 of 2)	intron (NM_010731, intron 1 of 2)	4689.0	NM_010731	16969.0	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-5026681-2	chr3	5026581	5026781	+	554.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus1|LINE|L1	-63595.0	NR_153343	100503882.0	Mm.139814	NR_153343	ENSMUSG00000096922	Gm17308	-	predicted gene, 17308	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-70984800-2	chr17	70984700	70984900	+	606.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023402, intron 1 of 3)	B4|SINE|B4	5716.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-21732176-2	chr13	21732076	21732276	+	855.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2858.0	NM_178210	319159.0		NM_178210	ENSMUSG00000067455	Hist1h4j	-	histone cluster 1, H4j	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-119897218-4	chr2	119897127	119897327	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164274)	promoter-TSS (NM_001164274)	-1.0	NM_001164274	29808.0	Mm.87532	NM_013720	ENSMUSG00000033943	Mga	AV312082|C130042M01Rik|C80739|D030062C11Rik|Mad5	MAX gene associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-96182393-2	chr10	96182293	96182493	+	718.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR33|LTR|ERVL	-43814.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-128845516-4	chr6	128845412	128845612	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19197.0	NM_030599	80782.0	Mm.6180	NM_030599	ENSMUSG00000079298	Klrb1b	Klrb1d|Ly55b|Ly55d|NKR-P1B|NKR-P1D|Nkrp1-b|Nkrp1b|Nkrp1d|ly-55b|ly-55d	killer cell lectin-like receptor subfamily B member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24728574-2	chr17	24728482	24728682	+	864.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163945, intron 2 of 9)	intron (NM_001163945, intron 2 of 9)	753.0	NM_001163945	66211.0	Mm.46198	NM_025425	ENSMUSG00000002500	Rpl3l	1110057H16Rik	ribosomal protein L3-like	protein-coding	1.89318115460349	2.65804525353496	1.54281421975076	1.99087023210371	2.46294845316158	2.13182838842228	1.74963434762058	2.12386247805502	0.135194536819642	0.884565559123962	0.998431161219273
Merged-chr4-130828064-2	chr4	130827964	130828164	+	597.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	35527.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-49147604-3	chr13	49147491	49147691	+	817.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290313, intron 1 of 29)	CpG-3837	737.0	NM_029361	75607.0	Mm.342723	NM_029361	ENSMUSG00000037989	Wnk2	1810073P09Rik|AW122246|ESTM15|X83337|mKIAA1760	WNK lysine deficient protein kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46489183-2	chr19	46489083	46489283	+	575.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_015752)	TTS (NM_015752)	-12465.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-54431789-1	chr14	54431689	54431889	+	790.5	f0_c57.idr	5' UTR (NM_008608, exon 1 of 10)	5' UTR (NM_008608, exon 1 of 10)	191.0	NM_008608	17387.0	Mm.280175	NM_008608	ENSMUSG00000000957	Mmp14	AI325305|MMP-X1|MT-MMP-1|MT1-MMP|sabe	matrix metallopeptidase 14 (membrane-inserted)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-64439453-2	chr14	64439353	64439553	+	659.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253715, intron 1 of 4)	intron (NM_001253715, intron 1 of 4)	1573.0	NM_001253715	110265.0	Mm.26713	NM_026322	ENSMUSG00000054733	Msra	2310045J23Rik|6530413P12Rik|MSR-A	methionine sulfoxide reductase A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-124712787-2	chr4	124712687	124712887	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2074.0	NM_029157	75062.0	Mm.25779	NM_029157	ENSMUSG00000028902	Sf3a3	4930512K19Rik|60kDa	splicing factor 3a, subunit 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-23539920-2	chr13	23539820	23540020	+	584.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C-int|LTR|ERVK	3524.0	NM_178197	319182.0	Mm.352273	NM_178197	ENSMUSG00000114456	Hist1h2bh	H2b-221	histone cluster 1, H2bh	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-10438214-4	chr16	10438117	10438317	+	867.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013778, intron 1 of 6)	intron (NM_001013778, intron 1 of 6)	9145.0	NM_001359069	383103.0	Mm.325732	NM_001013778	ENSMUSG00000050908	Tvp23a	Fam18a	trans-golgi network vesicle protein 23A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-17716431-2	chr14	17716331	17716531	+	892.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113417, intron 1 of 9)	intron (NM_001113417, intron 1 of 9)	55471.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-117505351-4	chr5	117505270	117505470	+	971.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001312914, intron 2 of 19)	intron (NM_001312914, intron 2 of 19)	91368.0	NM_001312914	333050.0	Mm.437947	NM_001034873	ENSMUSG00000061578	Ksr2	-	kinase suppressor of ras 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-123076447-4	chr10	123076340	123076540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153395)	promoter-TSS (NM_153395)	65.0	NM_001163024	67074.0	Mm.169924	NM_153395	ENSMUSG00000034602	Mon2	2610528O22Rik|AW495628|Sf21|mKIAA1040	MON2 homolog, regulator of endosome to Golgi trafficking	protein-coding	2.1695220900328	1.39257907802199	3.34082934951788	2.82662971259388	2.18930842746359	1.40241457486604	3.36664477980292	2.55291572696301	-0.105208883790717	0.912423085231653	0.998431161219273
Merged-chr5-64856505-2	chr5	64856405	64856605	+	841.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52982.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-50756886-4	chr16	50756783	50756983	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24110.0	NR_028300	68190.0	Mm.139089	NR_028300		Dubr	5330426P16Rik|Dum	Dppa2 upstream binding RNA	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-26581723-3	chr11	26581627	26581827	+	583.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027260, intron 2 of 12)	intron (NM_027260, intron 2 of 12)	12193.0	NM_027260	69922.0	Mm.285351	NM_027260	ENSMUSG00000064090	Vrk2	2810003O05Rik|AI447698	vaccinia related kinase 2	protein-coding	2.95681517203424	2.74098261071353	2.95516950005307	2.17376093254816	2.98038633030182	2.76075891812942	2.88424735646522	2.18452969803896	-0.0130287596028954	0.985662409576571	0.998431161219273
Merged-chr12-112638443-2	chr12	112638343	112638543	+	669.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007421, intron 11 of 12)	intron (NM_007421, intron 11 of 12)	-6385.0	NM_001161737	30954.0	Mm.289812	NM_013929	ENSMUSG00000064326	Siva1	CD27bp|Siva	SIVA1, apoptosis-inducing factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-81544652-1	chr17	81544552	81544752	+	551.0	f0_balb.idr	intron (NR_104580, intron 2 of 8)	intron (NR_104580, intron 2 of 8)	193735.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-28637215-1	chr12	28637115	28637315	+	1000.0	f1_c57bl6.idr	Intergenic	Intergenic	-1262.0	NM_011300	20115.0	Mm.279839	NM_011300	ENSMUSG00000061477	Rps7	Mtu|Rps7A|S7	ribosomal protein S7	protein-coding	-0.170893840429738	0.0580823500866439	-0.415610580717307	-0.418396315966397	-0.422316659137725	-0.411166498530311	-0.414812472658404	-0.00843996141420178	-0.802331623188628	0.755169093085216	1
Merged-chr18-12733518-2	chr18	12733418	12733618	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028341, intron 11 of 13)	intron (NM_028341, intron 11 of 13)	-7837.0	NM_181731	71132.0	Mm.179740	NM_027687	ENSMUSG00000024430	Cabyr	1700016C01Rik|4933421A18Rik|CBP86|FSP-2	calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-47711866-2	chr9	47711766	47711966	+	674.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	106342.0	NR_046048	100038460.0	Mm.447649	NR_046048		Gm10677	-	predicted gene 10677	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122780679-2	chr5	122780579	122780779	+	890.625	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1269.0	NM_145358	207565.0	Mm.289237	NM_145358	ENSMUSG00000029471	Camkk2	6330570N16Rik|AW061083|mKIAA0787	calcium/calmodulin-dependent protein kinase kinase 2, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-181540621-4	chr1	181540506	181540706	+	984.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29155.0	NM_207280	403180.0	Mm.220754	NM_207280	ENSMUSG00000050625	Ccdc121	6530421E24Rik|Gm755	coiled-coil domain containing 121	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-13323441-4	chr10	13323317	13323517	+	881.854126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195065, intron 1 of 12)	intron (NM_001195065, intron 1 of 12)	872.0	NM_001195096	215789.0	Mm.283359	NM_001033257	ENSMUSG00000062866	Phactr2	AV158170|BC012871	phosphatase and actin regulator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34627484-4	chr17	34627324	34627524	+	843.8988039999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019441)	promoter-TSS (NM_019441)	11.0	NM_001302396	54397.0	Mm.373627	NM_019441	ENSMUSG00000015474	Ppt2	0610007M19Rik|AA672937	palmitoyl-protein thioesterase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-90222449-6	chr16	90222362	90222562	+	985.861084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011434, intron 1 of 4)	intron (NM_011434, intron 1 of 4)	1720.0	NM_011434	20655.0	Mm.276325	NM_011434	ENSMUSG00000022982	Sod1	B430204E11Rik|Cu/Zn-SOD|CuZnSOD|Ipo-1|Ipo1|SODC|Sod-1	superoxide dismutase 1, soluble	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-58228795-2	chr9	58228695	58228895	+	776.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008884, intron 6 of 7)	intron (NM_008884, intron 6 of 7)	7645.0	NR_105806	102466639.0		NR_105806	ENSMUSG00000098886	Mir6385	Gm28021|mmu-mir-6385	microRNA 6385	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-52844352-3	chr1	52844231	52844431	+	781.266663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146108)	promoter-TSS (NM_146108)	-707.0	NM_146108	227095.0	Mm.222063	NM_146108	ENSMUSG00000041426	Hibch	2610509I15Rik|HIBYL-COA-H	3-hydroxyisobutyryl-Coenzyme A hydrolase	protein-coding	1.36506395480321	2.16086507242497	1.28457878693708	1.42998929850433	1.21549495333405	1.69242018980608	2.00283622021674	1.93761898556111	0.407545468162258	0.711481508503022	0.998431161219273
Merged-chr18-39582095-3	chr18	39581994	39582194	+	896.0277710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-94849.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-90224236-4	chr15	90224131	90224331	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033441)	promoter-TSS (NM_001033441)	-80.0	NM_001033441	380959.0	Mm.17853	NM_001033441	ENSMUSG00000075470	Alg10b	AA469671|AU045404|AW123895|C85569|Deaf1|Gm917|nse5	asparagine-linked glycosylation 10B (alpha-1,2-glucosyltransferase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-12393763-2	chr13	12393663	12393863	+	825.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-1612.0	NM_144835	217995.0	Mm.171186	NM_144835	ENSMUSG00000050244	Heatr1	AA517551|B130016L12Rik|BC019693	HEAT repeat containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171017945-4	chr1	171017776	171017976	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1050.0	NM_144559	246256.0	Mm.251254	NM_144559	ENSMUSG00000059089	Fcgr4	4833442P21Rik|CD16-2|FcgRIV|FcgammaRIV|Fcgr3a|Fcrl3	Fc receptor, IgG, low affinity IV	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141414195-4	chr7	141414098	141414298	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172116)	promoter-TSS (NM_172116)	-73.0	NM_172116	213350.0	Mm.290953	NM_172116	ENSMUSG00000051007	Gatd1	BC023835|D230016J19Rik|Pddc1	glutamine amidotransferase like class 1 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-10293050-2	chr10	10292950	10293150	+	724.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	179264.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-60515720-3	chr18	60515594	60515794	+	598.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-10460.0	NM_026302	67665.0	Mm.272801	NM_026302	ENSMUSG00000024603	Dctn4	1110001K06Rik|4930547K17Rik|C130039E17Rik|p62	dynactin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140763551-5	chr5	140763581	140763781	+	819.299988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010302, intron 2 of 3)	intron (NM_010302, intron 2 of 3)	39554.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-31229558-2	chr16	31229458	31229658	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-28320.0	NM_030138	78618.0	Mm.274646	NM_030138	ENSMUSG00000049076	Acap2	4832442G16|9530039J15Rik|CNT-B2|Centb2|mKIAA0041	ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-32909915-3	chr12	32909818	32910018	+	734.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	43871.0	NR_044986	74076.0	Mm.50114	NR_044986	ENSMUSG00000097494	4933406C10Rik	-	RIKEN cDNA 4933406C10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-29448560-4	chr19	29448463	29448663	+	998.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021396, intron 4 of 5)	RLTR14-int|LTR|ERV1	37644.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-21999043-2	chr6	21998943	21999143	+	680.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081351, intron 1 of 21)	intron (NM_001081351, intron 1 of 21)	13133.0	NM_001081351	214642.0	Mm.221404	NM_001081351	ENSMUSG00000062980	Cped1	6720481P07|A430107O13Rik|AI552584	cadherin-like and PC-esterase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-51455597-3	chr10	51455492	51455692	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25020.0	NM_008147	14727.0	Mm.439661	NM_008147	ENSMUSG00000112023	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-31157245-2	chr8	31157135	31157335	+	809.666626	f1_balb.idr|f1_c57bl6.idr	intron (NR_103719, intron 5 of 7)	intron (NR_103719, intron 5 of 7)	6919.0	NR_103719	234138.0	Mm.349800	NM_144927	ENSMUSG00000031577	Tti2	-	TELO2 interacting protein 2	protein-coding	2.94271385946118	2.81316529853865	2.61760351898328	2.3169782107533	1.35650214282514	1.98840798947125	2.73958411327034	2.65513616548804	-0.809794208477733	0.346783311192944	0.847437850938575
Merged-chr11-121228040-2	chr11	121227940	121228140	+	652.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252548, intron 2 of 6)	intron (NM_001252548, intron 2 of 6)	900.0	NM_001254735	217370.0	Mm.27182	NM_144832	ENSMUSG00000039294	BC017643	-	cDNA sequence BC017643	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128493902-4	chr10	128493811	128494011	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010860)	promoter-TSS (NM_010860)	-25.0	NM_010860	17904.0	Mm.337074	NM_010860	ENSMUSG00000090841	Myl6	ESMLC|LC17|LC17-GI|MLC-3|MLC1SM|Myln	myosin, light polypeptide 6, alkali, smooth muscle and non-muscle	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-120619313-2	chr5	120619213	120619413	+	659.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028041, intron 5 of 19)	intron (NM_028041, intron 5 of 19)	6183.0	NM_028041	71990.0	Mm.24495	NM_028041	ENSMUSG00000029599	Ddx54	2410015A15Rik|AI414901|DP97	DEAD (Asp-Glu-Ala-Asp) box polypeptide 54	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-102087242-2	chr11	102087142	102087342	+	850.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_016695, intron 1 of 12)	CpG	1273.0	NM_016695	50997.0	Mm.36242	NM_016695	ENSMUSG00000017314	Mpp2	D11Bwg0652e|Dlg2|Dlgh2|Pals4	membrane protein, palmitoylated 2 (MAGUK p55 subfamily member 2)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-145115010-2	chr7	145114910	145115110	+	953.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	93109.0	NR_033626	100040049.0	Mm.102235	NR_033626	ENSMUSG00000109305	1810010D01Rik	Gm2572	RIKEN cDNA 1810010D01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-52502321-4	chr12	52502228	52502428	+	961.0750119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13749.0	NM_009706	11855.0	Mm.35059	NM_009706	ENSMUSG00000035133	Arhgap5	p190-B|p190B	Rho GTPase activating protein 5	protein-coding	-1.56355737717652	-1.81244775989375	-1.82128546162293	-1.82854501295842	-1.83962066705452	-1.81053259306168	-1.81928479966835	-1.82724555674025	-1.28500227969968	0.715751224811686	1
Merged-chr10-78574689-7	chr10	78574614	78574814	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359303)	promoter-TSS (NM_001359303)	201.0	NM_001359301	216136.0	Mm.2644	NM_173751	ENSMUSG00000032763	Ilvbl	5830463I21|AI415009	ilvB (bacterial acetolactate synthase)-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-96627390-4	chr15	96627262	96627462	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166458, intron 1 of 15)	intron (NM_001166458, intron 1 of 15)	14600.0	NM_134086	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-70095863-1	chr17	70095763	70095963	+	877.0	f0_balb.idr	intron (NM_001347411, intron 2 of 14)	intron (NM_001347411, intron 2 of 14)	126790.0	NM_001347411	224997.0	Mm.311840	NM_027712	ENSMUSG00000003279	Dlgap1	4933422O14Rik|9630002F18|AI845682|AI848168|BB075781|D17Bwg0511e|GKAP/SAPAP|GKPA/SAPAP|Gkap|Sapap1|mKIAA4162	DLG associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-74970607-2	chr7	74970507	74970707	+	778.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59604.0	NR_131122	75205.0	Mm.399304	NR_131122	ENSMUSG00000108803	4930533N22Rik	Gm44904	RIKEN cDNA 4930533N22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-52758878-2	chr2	52758778	52758978	+	674.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16729.0	NM_019667	56324.0	Mm.263639	NM_019667	ENSMUSG00000055371	Stam2	1200004O12Rik|5730456G07Rik|BB145015|Hbp	signal transducing adaptor molecule (SH3 domain and ITAM motif) 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-87787941-1	chr17	87787841	87788041	+	565.0	f1_balb.idr	intron (NM_199251, intron 1 of 1)	intron (NM_199251, intron 1 of 1)	10053.0	NM_199251	210741.0	Mm.312046	NM_199251	ENSMUSG00000050138	Kcnk12	mntk1	potassium channel, subfamily K, member 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-105383591-2	chr14	105383491	105383691	+	858.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-43968.0	NR_045859	71362.0	Mm.410781	NR_045859	ENSMUSG00000115548	5430440P10Rik	-	RIKEN cDNA 5430440P10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-111555477-3	chr13	111555367	111555567	+	918.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16A|LTR|ERVL	-5558.0	NR_151444	102636218.0	Mm.343364	NR_151444	ENSMUSG00000085634	Gm15290	-	predicted gene 15290	ncRNA	1.43327181612638	0.749342417272008	0.732065163633761	1.12170343955428	1.80131275088867	0.753169667542688	2.14172290062026	0.944424536808483	1.73140519818688	0.225196120458497	0.717065566152081
Merged-chr15-89180840-4	chr15	89180742	89180942	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138749)	promoter-TSS (NM_138749)	-54.0	NM_138749	140570.0	Mm.267514	NM_138749	ENSMUSG00000036606	Plxnb2	Debt|plexin-B2	plexin B2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-63132486-4	chr14	63132377	63132577	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007798, intron 1 of 9)	intron (NM_007798, intron 1 of 9)	10015.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-11481296-4	chr4	11481201	11481401	+	893.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4657.0	NM_001081183	66185.0	Mm.331487	NM_001081183	ENSMUSG00000040720	Virma	1110037F02Rik|4930422M05Rik|Kiaa1429|mKIAA1429	vir like m6A methyltransferase associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-118479992-3	chr7	118479902	118480102	+	797.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	11973.0	NM_001033380	319622.0	Mm.323386	NM_001033380	ENSMUSG00000095115	Itpripl2	C130081G24|E030018N11Rik	inositol 1,4,5-triphosphate receptor interacting protein-like 2	protein-coding	-0.259070635579071	-0.241399553934728	0.483646627512767	-0.251607667499577	-0.257955911830491	0.555648408464057	-0.245875104635532	-0.250826425808721	0.200977024927677	0.93635043517253	1
Merged-chr5-20000132-2	chr5	20000032	20000232	+	618.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_015823, intron 1 of 21)	intron (NM_015823, intron 1 of 21)	92614.0	NM_015823	50791.0	Mm.332231	NM_015823	ENSMUSG00000040003	Magi2	AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705	membrane associated guanylate kinase, WW and PDZ domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-11989497-4	chr4	11989396	11989596	+	932.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040577, intron 4 of 4)	intron (NR_040577, intron 4 of 4)	22922.0	NR_040577	100503636.0	Mm.209078	NR_040577		1700123M08Rik	1600025K15Rik	RIKEN cDNA 1700123M08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-107676578-4	chr13	107676469	107676669	+	959.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER121|DNA|TcMar?	-10828.0	NR_045900	72257.0	Mm.234155	NR_045900	ENSMUSG00000102000	1700006H21Rik	-	RIKEN cDNA 1700006H21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-64715468-4	chr17	64715364	64715564	+	970.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008549, intron 16 of 21)	intron (NM_008549, intron 16 of 21)	-51647.0	NR_105051	101202683.0	Mm.393309	NR_105051		Dreh	-	down-regulated in hepatocellular carcinoma	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-126156149-5	chr4	126155966	126156166	+	771.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025856, intron 6 of 11)	intron (NM_025856, intron 6 of 11)	6599.0	NM_025856	66938.0	Mm.29813	NM_025856	ENSMUSG00000073758	Sh3d21	1700029G01Rik|AU019788	SH3 domain containing 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-119764117-4	chr3	119764094	119764294	+	775.700012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310711, intron 2 of 13)	intron (NM_001310711, intron 2 of 13)	19194.0	NM_001310711	56195.0	Mm.29966	NM_019550	ENSMUSG00000028134	Ptbp2	Ptb2|brPTB|nPTB	polypyrimidine tract binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-70875408-4	chr6	70875320	70875520	+	945.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010121, intron 2 of 16)	intron (NM_010121, intron 2 of 16)	30905.0	NM_001313918	13666.0	Mm.247167	NM_010121	ENSMUSG00000031668	Eif2ak3	Pek|Perk	eukaryotic translation initiation factor 2 alpha kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-52959243-4	chr2	52959139	52959339	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	101371.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-90259957-4	chr16	90259866	90260066	+	967.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346799, intron 4 of 19)	intron (NM_001346799, intron 4 of 19)	24520.0	NM_001346799	224432.0	Mm.439811	NM_178923	ENSMUSG00000022983	Scaf4	AA517739|Sfrs15|Sra4|Srsf15	SR-related CTD-associated factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-34445789-4	chr19	34445614	34445814	+	845.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29421.0	NM_009890	12642.0	Mm.30824	NM_009890	ENSMUSG00000050370	Ch25h	AI462618|m25OH	cholesterol 25-hydroxylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-77962874-4	chr10	77962746	77962946	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138301, intron 4 of 33)	L1MDa|LINE|L1	7026.0	NM_138301	28240.0	Mm.276762	NM_138301	ENSMUSG00000009292	Trpm2	9830168K16Rik|C79133|LTRPC2|TRPC7|Trp7|Trrp7	transient receptor potential cation channel, subfamily M, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-119440592-4	chr8	119440494	119440694	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027950, intron 1 of 5)	intron (NM_027950, intron 1 of 5)	3432.0	NM_027950	71839.0	Mm.272357	NM_027950	ENSMUSG00000074063	Osgin1	1700012B18Rik|Okl38	oxidative stress induced growth inhibitor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-16932320-4	chr11	16932219	16932419	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18963.0	NR_110421	72735.0	Mm.268598	NR_015469		Eldr	2810442I21Rik|4930500E12Rik|Fabl	Egfr long non-coding downstream RNA	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-8625580-4	chr15	8625481	8625681	+	853.474976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	85226.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-118802043-3	chr7	118801937	118802137	+	733.733337	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027815, intron 21 of 30)	intron (NM_027815, intron 21 of 30)	53576.0	NM_001168220	66356.0	Mm.482278	NM_023197	ENSMUSG00000030980	Knop1	2310008H09Rik|Tsg118	lysine rich nucleolar protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-37197015-3	chr6	37196914	37197114	+	923.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347104, intron 1 of 32)	intron (NM_001347104, intron 1 of 32)	102962.0	NM_001081206	320127.0	Mm.119469	NM_001081206	ENSMUSG00000038665	Dgki	6430604M11Rik|C130010K08Rik	diacylglycerol kinase, iota	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36107412-2	chr1	36107312	36107512	+	547.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_015818)	TTS (NM_015818)	36901.0	NR_105862	102465540.0		NR_105862	ENSMUSG00000098752	Mir6897	Gm27652|mmu-mir-6897	microRNA 6897	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90480460-2	chr2	90480360	90480560	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	MIRb|SINE|MIR	-1286.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4756495-4	chr19	4756384	4756584	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025717)	promoter-TSS (NM_025717)	-41.0	NM_025717	66704.0	Mm.396734	NM_025717	ENSMUSG00000033760	Rbm4b	4921506I22Rik|AI504630|AI506404|Lark2|Neosin	RNA binding motif protein 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-83034153-3	chr15	83034010	83034210	+	734.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271411)	promoter-TSS (NM_001271411)	-713.0	NM_001271411	74039.0	Mm.32584	NM_028728	ENSMUSG00000058099	Nfam1	4921501M20Rik|Cnaip	Nfat activating molecule with ITAM motif 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-129983225-1	chr5	129983125	129983325	+	821.0	f1_c57bl6.idr	3' UTR (NM_001001327, exon 2 of 2)	3' UTR (NM_001001327, exon 2 of 2)	19824.0	NM_010368	110006.0	Mm.3317	NM_010368	ENSMUSG00000025534	Gusb	AI747421|Gur|Gus|Gus-r|Gus-s|Gus-t|Gus-u|Gut|asd|g	glucuronidase, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-26492537-1	chr11	26492437	26492637	+	759.0	f1_c57bl6.idr	intron (NM_027260, intron 8 of 12)	B3|SINE|B2	101383.0	NM_027260	69922.0	Mm.285351	NM_027260	ENSMUSG00000064090	Vrk2	2810003O05Rik|AI447698	vaccinia related kinase 2	protein-coding	-0.453105670623887	-0.441165051021562	0.220190889605835	-0.448102135899567	-0.452361998479809	-0.244158494318431	-0.444219601070898	-0.141874830936407	-0.737955022507856	0.774070723969858	1
Merged-chr10-91168346-3	chr10	91168318	91168518	+	884.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080129, intron 1 of 8)	B1_Mus1|SINE|Alu	2132.0	NM_001283048	21917.0	Mm.159684	NM_011605	ENSMUSG00000019961	Tmpo	5630400D24Rik|AI195756|AI606875|AW214352|AW547477|LAP2|TP	thymopoietin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-139299220-1	chr7	139299120	139299320	+	563.0	f1_c57bl6.idr	Intergenic	Intergenic	50738.0	NM_001098636	101631.0	Mm.334300	NM_001033206	ENSMUSG00000060260	Pwwp2b	AI594893|D7Ertd517e|D930023J19Rik|Pwwp2	PWWP domain containing 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5592591-2	chr17	5592491	5592691	+	618.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	99991.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150569426-6	chr4	150569262	150569462	+	991.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 11 of 22)	CpG	82812.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135206433-4	chr4	135206328	135206528	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	66332.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-7482843-1	chr19	7482743	7482943	+	1000.0	f0_c57.idr	intron (NM_001003934, intron 1 of 8)	CpG	448.0	NM_001271486	20168.0	Mm.246990	NM_053076	ENSMUSG00000024758	Rtn3	RTN3-A1	reticulon 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-21590499-3	chr16	21590415	21590615	+	687.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081366, intron 44 of 46)	intron (NM_001081366, intron 44 of 46)	104150.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-118488334-4	chr7	118488263	118488463	+	966.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001033380, exon 1 of 1)	3' UTR (NM_001033380, exon 1 of 1)	3612.0	NM_001033380	319622.0	Mm.323386	NM_001033380	ENSMUSG00000095115	Itpripl2	C130081G24|E030018N11Rik	inositol 1,4,5-triphosphate receptor interacting protein-like 2	protein-coding	2.30723171952142	1.27866574550996	2.37682600842196	2.22384921560714	0.940672954819534	1.28762707530925	0.99389712316631	1.57282761858047	-2.87727858514666	0.0183744061646796	0.169234487075609
Merged-chr6-124745168-2	chr6	124745068	124745268	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_007881, exon 7 of 10)	exon (NM_007881, exon 7 of 10)	-4089.0	NM_013535	14790.0	Mm.439877	NM_013535	ENSMUSG00000072772	Grcc10	2310033H05Rik|C10	gene rich cluster, C10 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-24990152-4	chr19	24990054	24990254	+	796.633301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC4|LINE|L1	-9375.0	NM_028785	76088.0	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	-0.282807268470138	-0.631819747706052	-0.634998221993496	-0.637441212108841	-0.501256795833725	-0.148400338654638	-0.634298349549187	-0.637015015644775	0.841440639849677	0.757362280684944	1
Merged-chr8-117330063-3	chr8	117329971	117330171	+	915.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	-19099.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-88514638-4	chr4	88514543	88514743	+	809.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8151.0	NM_010510	15977.0	Mm.1245	NM_010510	ENSMUSG00000048806	Ifnb1	IFN-beta|IFNB|Ifb	interferon beta 1, fibroblast	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99030055-7	chr15	99029979	99030179	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_009448, exon 1 of 4)	5' UTR (NM_009448, exon 1 of 4)	188.0	NM_009448	22146.0	Mm.88212	NM_009448	ENSMUSG00000043091	Tuba1c	M[a]6|Tuba6	tubulin, alpha 1C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-76242216-4	chr18	76242112	76242312	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010754, intron 1 of 10)	G-rich|Low_complexity|Low_complexity	511.0	NM_010754	17126.0	Mm.152699	NM_010754	ENSMUSG00000024563	Smad2	7120426M23Rik|Madh2|Madr2|Smad-2|mMad2	SMAD family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-135651910-4	chr7	135651795	135651995	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001316681)	promoter-TSS (NM_001316681)	-4.0	NM_001316681	19267.0	Mm.945	NM_011212	ENSMUSG00000041836	Ptpre	PTPe|PTPepsilon|RPTPepsilon	protein tyrosine phosphatase, receptor type, E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-94589188-2	chr15	94589088	94589288	+	863.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008971, intron 1 of 8)	intron (NM_008971, intron 1 of 8)	636.0	NM_008971	19230.0	Mm.490250	NM_008971	ENSMUSG00000022451	Twf1	A6|Ptk9|twinfilin	twinfilin actin binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91562184-4	chr16	91562076	91562276	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008338, intron 6 of 6)	intron (NM_008338, intron 6 of 6)	15082.0	NM_008338	15980.0	Mm.249364	NM_008338	ENSMUSG00000022965	Ifngr2	Ifgr2|Ifgt	interferon gamma receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-122891993-2	chr14	122891893	122892093	+	876.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145466, intron 2 of 2)	intron (NM_145466, intron 2 of 2)	-21037.0	NR_155287	105245866.0	Mm.390754	NM_001039531	ENSMUSG00000075463	Gm15735	4930594M22Rik|F930011C10Rik	predicted gene 15735	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-21453895-4	chr11	21453797	21453997	+	970.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57283.0	NR_028259	237694.0	Mm.72926	NM_172792	ENSMUSG00000078962	4932414J04Rik	-	RIKEN cDNA 4932414J04 gene	ncRNA	2.77107419546456	2.70085503714012	1.591437546611	1.75517355233542	2.85578100983792	1.65302193503624	1.81844189977914	2.7186405599419	0.126312424126566	0.892534825646431	0.998431161219273
Merged-chr12-55774494-4	chr12	55774368	55774568	+	770.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003719, intron 9 of 39)	Lx7|LINE|L1	47048.0	NM_019994	56784.0	Mm.292180	NM_019994	ENSMUSG00000021027	Ralgapa1	2310003F20Rik|4930400K19Rik|AI563624|GRIPE|Garnl1|Tulip1|mKIAA0884	Ral GTPase activating protein, alpha subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-152192335-10	chr3	152192247	152192447	+	926.8800050000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356364, intron 1 of 2)	intron (NM_001356364, intron 1 of 2)	1498.0	NM_025926	67035.0	Mm.46746	NM_025926	ENSMUSG00000028035	Dnajb4	1700029A20Rik|2010306G19Rik|5730460G06Rik	DnaJ heat shock protein family (Hsp40) member B4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-47090752-4	chr19	47090654	47090854	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011053)	promoter-TSS (NM_011053)	-12.0	NM_011053	18572.0	Mm.41166	NM_011053	ENSMUSG00000025047	Pdcd11	1110021I22Rik|ALG-4|Pdcd7|mKIAA0185	programmed cell death 11	protein-coding	4.99046692397409	4.96568270223387	5.28948078187354	5.09887179893281	5.26554398198185	4.64537269731222	4.93299373413439	5.24454840495499	-0.0437643853933986	0.888982133968941	0.998431161219273
Merged-chr1-127225275-4	chr1	127225165	127225365	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145128, intron 1 of 17)	intron (NM_145128, intron 1 of 17)	20279.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-25404022-4	chr15	25403918	25404118	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027395, intron 1 of 1)	intron (NM_027395, intron 1 of 1)	9746.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45061431-2	chr7	45061331	45061531	+	867.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025533)	promoter-TSS (NM_025533)	221.0	NM_022999	65116.0	Mm.379098	NM_022999	ENSMUSG00000007837	Prrg2	1600014G02Rik|2510041M06Rik|N4WBP1	proline-rich Gla (G-carboxyglutamic acid) polypeptide 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111437348-4	chr12	111437260	111437460	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5301.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-121894685-4	chr14	121894569	121894769	+	998.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026861, intron 1 of 8)	intron (NM_026861, intron 1 of 8)	-15261.0	NR_130999	78312.0	Mm.188743	NR_130999	ENSMUSG00000102112	1810041H14Rik	-	RIKEN cDNA 1810041H14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91265743-2	chr2	91265698	91265898	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023854, intron 2 of 15)	intron (NM_023854, intron 2 of 15)	683.0	NM_023854	77038.0	Mm.43636	NM_023854	ENSMUSG00000027255	Arfgap2	2310032E02Rik|Zfp289	ADP-ribosylation factor GTPase activating protein 2	protein-coding	1.10177353282199	0.441091446776609	1.1455900479106	0.603578500920696	0.575370958352259	1.10457631987154	0.434301713548027	0.426785279014741	-0.996486425969672	0.559405100915673	1
Merged-chr15-78346367-1	chr15	78346267	78346467	+	543.0	f1_balb.idr	intron (NM_001358854, intron 11 of 14)	intron (NM_001358854, intron 11 of 14)	-2232.0	NR_106138	102466845.0		NR_106138	ENSMUSG00000099059	Mir7676-2	Gm27790|mmu-mir-7676-2	microRNA 7676-2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-49845374-4	chr11	49845286	49845486	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1365.0	NM_001163671	26420.0	Mm.68933	NM_016961	ENSMUSG00000020366	Mapk9	AI851083|JNK2|Prkm9|p54aSAPK	mitogen-activated protein kinase 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-9932460-2	chr19	9932376	9932576	+	930.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11B|LTR|ERVK	-32943.0	NM_016692	16319.0	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	0.109582160141652	-0.026368047097434	0.678791876643612	-0.0374185959734619	0.801809712108155	-0.0249694929989691	-0.0312169139203806	-0.0365740130385432	0.140620348380881	0.949814384956077	1
Merged-chr2-144698193-4	chr2	144698092	144698292	+	992.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025314, intron 4 of 5)	intron (NM_025314, intron 4 of 5)	98239.0	NM_025314	66044.0	Mm.28109	NM_025314	ENSMUSG00000027430	Dtd1	0610006H08Rik|DTD|DUE-B|Hars2	D-tyrosyl-tRNA deacylase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-82927069-2	chr18	82926969	82927169	+	711.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177464, intron 1 of 5)	intron (NM_001177464, intron 1 of 5)	-6509.0	NR_033307	75853.0	Mm.420737	NR_033307		4930592I03Rik	-	RIKEN cDNA 4930592I03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-59393836-2	chr11	59393736	59393936	+	716.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18183.0	NM_001045521	216797.0	Mm.339586	NM_001045521	ENSMUSG00000049291	Prss38	Gm249|Mpn2	protease, serine 38	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81267558-2	chr10	81267458	81267658	+	658.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018758)	promoter-TSS (NM_018758)	-614.0	NM_018758	57267.0	Mm.293931	NM_018758	ENSMUSG00000004931	Apba3	AW208791|Mint-3|X11gamma|lin-10|mint3	amyloid beta (A4) precursor protein-binding, family A, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-114941346-1	chr5	114941246	114941446	+	555.0	f1_balb.idr	promoter-TSS (NM_028211)	promoter-TSS (NM_028211)	-856.0	NM_028211	72357.0	Mm.292672	NM_028211	ENSMUSG00000029559	2210016L21Rik	-	RIKEN cDNA 2210016L21 gene	protein-coding	0.571635009901758	0.316422321845387	0.309082954127824	0.74388573969465	1.11781302578007	0.31807242949542	0.31070444879836	0.861601704925229	1.21766012276596	0.517448786290039	1
Merged-chr7-43667239-5	chr7	43667171	43667371	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CAT)n|Simple_repeat|Simple_repeat	-4760.0	NM_145582	233189.0	Mm.26514	NM_145582	ENSMUSG00000038888	Ctu1	Atpbd3|BC005752	cytosolic thiouridylase subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-93914449-4	chr16	93914389	93914589	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15078.0	NM_001165925	56173.0	Mm.328716	NM_019500	ENSMUSG00000047109	Cldn14	AI851731	claudin 14	protein-coding	5.88706964325883	6.10943488972525	5.65950291258936	6.1141004736479	4.04398904231928	4.93701735613176	4.82948492414698	4.73390048103856	-1.48834821430515	7.31454986263535e-07	5.00532144022237e-05
Merged-chr7-25127946-2	chr7	25127846	25128046	+	897.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163556, intron 1 of 13)	intron (NM_001163556, intron 1 of 13)	4514.0	NM_011138	18987.0	Mm.76683	NM_011138	ENSMUSG00000008496	Pou2f2	Oct-2|Oct2a|Oct2b|Oct2c|Oct2d|Otf-2|Otf2	POU domain, class 2, transcription factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-152802380-4	chr2	152802281	152802481	+	997.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009743, intron 2 of 2)	B2_Mm2|SINE|B2	26108.0	NR_149254	12048.0	Mm.238213	NM_009743	ENSMUSG00000007659	Bcl2l1	Bcl(X)L|Bcl-XL|Bcl2l|BclX|bcl-x|bcl2-L-1	BCL2-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141263910-2	chr7	141263810	141264010	+	621.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001252600, exon 7 of 9)	exon (NM_001252600, exon 7 of 9)	2514.0	NM_001252601	54123.0	Mm.3233	NM_016850	ENSMUSG00000025498	Irf7	-	interferon regulatory factor 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-59820340-4	chr13	59820241	59820441	+	830.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153538, intron 2 of 27)	intron (NM_153538, intron 2 of 27)	2806.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-145126548-3	chr6	145126455	145126655	+	623.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008511, intron 1 of 18)	Lx9|LINE|L1	4816.0	NM_008511	16970.0	Mm.843	NM_008511	ENSMUSG00000030263	Lrmp	D6Int3|D6Int4|D6Int5|D6Int7|D6Int8|Jaw1	lymphoid-restricted membrane protein	protein-coding	1.70937028386008	2.36199143108346	1.8537779147595	2.1224932759946	2.02691501858085	1.61469452140109	1.13875972297277	1.33897020870626	-1.31809310812436	0.21810745102778	0.709034580460856
Merged-chr17-88131479-4	chr17	88131378	88131578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001190356)	TTS (NM_001190356)	5966.0	NM_001190356	225058.0	Mm.312053	NM_001190356		Gm4832	EG225058	predicted gene 4832	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76747568-2	chr15	76747468	76747668	+	672.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198420, intron 3 of 10)	intron (NM_198420, intron 3 of 10)	-23723.0	NM_176828	223665.0	Mm.291713	NM_145472	ENSMUSG00000116138	C030006K11Rik	1110033I13Rik	RIKEN cDNA C030006K11 gene	protein-coding	0.43283475301205	0.799310942252858	0.176046641050361	0.337409585231444	0.164298248963204	0.81060387270824	0.177435660035055	0.340469616670502	-0.340710546660743	0.856391229112426	1
Merged-chr6-134055698-2	chr6	134055598	134055798	+	823.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007961, intron 1 of 7)	intron (NM_007961, intron 1 of 7)	19998.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	0.536542031277964	0.615284437348143	0.589917502011724	1.07089528076829	0.379497402915998	0.62095344973767	1.31952410193367	0.390444904175066	0.156447735630434	0.924614820586786	1
Merged-chr6-124857608-3	chr6	124857507	124857707	+	872.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013534)	promoter-TSS (NM_013534)	80.0	NM_013534	14789.0	Mm.35708	NM_013534	ENSMUSG00000023191	P3h3	BC016431|Grcb|Leprel2	prolyl 3-hydroxylase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55727177-2	chr14	55727077	55727277	+	792.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4914.0	NM_001360387	56187.0	Mm.87216	NM_019519	ENSMUSG00000040472	Rabggta	gm	Rab geranylgeranyl transferase, a subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127810711-2	chr7	127810611	127810811	+	926.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_024414, exon 7 of 10)	exon (NM_024414, exon 7 of 10)	10102.0	NM_001040684	101502.0	Mm.157103	NM_133943	ENSMUSG00000042289	Hsd3b7	AI195443|BB098564	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-35252184-2	chr6	35252084	35252284	+	624.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015608)	promoter-TSS (NR_015608)	-515.0	NR_015608	67705.0	Mm.228046	NR_015608	ENSMUSG00000073155	1810058I24Rik	AI414869|AI848234	RIKEN cDNA 1810058I24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-107302322-2	chr11	107302222	107302422	+	694.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 4 of 9)	intron (NR_153311, intron 4 of 9)	-112941.0	NM_001161329	68979.0	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99470277-2	chr7	99470177	99470377	+	561.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_028145, exon 3 of 7)	exon (NM_028145, exon 3 of 7)	4273.0	NM_028145	72184.0	Mm.153585	NM_028145	ENSMUSG00000035298	Klhl35	2810406K13Rik	kelch-like 35	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-162494012-2	chr2	162493912	162494112	+	662.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291150, intron 1 of 30)	intron (NM_001291150, intron 1 of 30)	103199.0	NR_040617	77645.0	Mm.447752	NR_040617	ENSMUSG00000084919	Ptprtos	C330008G21Rik	protein tyrosine phosphatase, receptor type T, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132437882-2	chr4	132437782	132437982	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15436.0	NM_175306	100169.0	Mm.158361	NM_175306	ENSMUSG00000066043	Phactr4	3110001B12Rik|AI527228|AW495572|C330013F19Rik|N28169|mKIAA4120	phosphatase and actin regulator 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-101174553-4	chr4	101174457	101174657	+	779.912476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146145, intron 9 of 24)	intron (NM_146145, intron 9 of 24)	90725.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80086525-2	chr7	80086425	80086625	+	701.833374	f1_balb.idr|f1_c57bl6.idr	exon (NM_001146000, exon 4 of 6)	exon (NM_001146000, exon 4 of 6)	-11268.0	NR_045695	100859962.0	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-113848845-6	chr2	113848738	113848938	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181416)	promoter-TSS (NM_181416)	-177.0	NM_181416	228482.0	Mm.45753	NM_181416	ENSMUSG00000041219	Arhgap11a	6530401L14Rik|mKIAA0013	Rho GTPase activating protein 11A	protein-coding	3.52967184298052	2.93944944913217	2.22347450994143	1.28700174974507	3.28889337410293	1.38398404284705	2.85855284359251	1.80494106261275	-0.341919016888295	0.728876330889092	0.998431161219273
Merged-chr3-65952081-4	chr3	65951960	65952160	+	771.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019937, intron 3 of 10)	intron (NM_019937, intron 3 of 10)	6189.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	1.86677222206854	2.24398459706721	2.42107573468187	1.96311864874664	2.25119974482095	3.07152107709919	1.85664125845228	2.56533059979381	0.858812934736549	0.313952272929589	0.815793658479109
Merged-chr13-42301416-4	chr13	42301302	42301502	+	982.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010104)	promoter-TSS (NM_010104)	-74.0	NM_010104	13614.0	Mm.14543	NM_010104	ENSMUSG00000021367	Edn1	ET-1|PPET1|preproET	endothelin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-43016519-4	chr17	43016429	43016629	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178589)	promoter-TSS (NM_178589)	-26.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-85206089-3	chr9	85205986	85206186	+	752.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	121038.0	NM_001160378	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69095871-4	chr11	69095736	69095936	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3113.0	NM_011065	18626.0	Mm.7373	NM_011065	ENSMUSG00000020893	Per1	Hftm|Per|m-rigui|mPer1	period circadian clock 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120101780-1	chr11	120101680	120101880	+	542.0	f1_balb.idr	Intergenic	Intergenic	2846.0	NM_001110242	208501.0	Mm.46699	NM_001110242	ENSMUSG00000078572	Ndufaf8	1810043H04Rik	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex assembly factor 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127270482-4	chr7	127270410	127270610	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3549.0	NM_009266	20768.0	Mm.20294	NM_009266	ENSMUSG00000049091	Sephs2	Sps2|Ysg3	selenophosphate synthetase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-135691497-4	chr3	135691399	135691599	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008689)	promoter-TSS (NM_008689)	48.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-58135144-4	chr15	58135042	58135242	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027435)	promoter-TSS (NM_027435)	-60.0	NM_027435	70472.0	Mm.221758	NM_027435	ENSMUSG00000022360	Atad2	2610509G12Rik	ATPase family, AAA domain containing 2	protein-coding	5.94639416426712	6.13055738527543	5.65869680654181	6.17849747517274	5.5334445853908	5.66078123279541	6.43304466740716	6.2030815778477	0.0142918670803885	0.956838790797431	0.998431161219273
Merged-chr11-34737417-4	chr11	34737308	34737508	+	860.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033374, intron 2 of 51)	L1M3|LINE|L1	46497.0	NM_033374	94176.0	Mm.380679	NM_033374	ENSMUSG00000020143	Dock2	AI662014|AW122239|CED-5|Hch|MBC	dedicator of cyto-kinesis 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-181659366-4	chr2	181659286	181659486	+	930.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12254.0	NM_009236	20672.0	Mm.264904	NM_009236	ENSMUSG00000046470	Sox18	AI385749|Ra|Ragl	SRY (sex determining region Y)-box 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-128039607-4	chr8	128039535	128039735	+	752.241699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	238590.0	NR_105822	102465212.0		NR_105822	ENSMUSG00000099326	Mir21c	Gm28013|mmu-mir-21c	microRNA 21c	ncRNA	1.51990560814554	2.63362557013258	2.31325499929264	2.47095805303268	1.72083580377984	2.93891820786991	2.03880401140855	2.75346484358451	0.354474370563428	0.689845903484742	0.996533206832645
Merged-chr17-43576534-4	chr17	43576436	43576636	+	979.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013737, intron 1 of 11)	intron (NM_013737, intron 1 of 11)	8085.0	NM_013737	27226.0	Mm.9277	NM_013737	ENSMUSG00000023913	Pla2g7	PAF-AH|R75400	phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	protein-coding	1.11187535250158	1.93387070970445	1.18237420412965	1.70452185948694	1.80701286615075	0.988717607501527	1.36931128978719	1.71394058784622	-0.0620016084631199	0.959131590184782	0.998431161219273
Merged-chr17-28800883-4	chr17	28800710	28800910	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081315)	promoter-TSS (NM_001081315)	-316.0	NM_001081315	268936.0	Mm.291877	NM_199061	ENSMUSG00000063952	Brpf3	AI413466|AW493400|mKIAA1286	bromodomain and PHD finger containing, 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-77843735-2	chr18	77843635	77843835	+	844.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_013831, intron 2 of 14)	L1_Mur3|LINE|L1	-47345.0	NR_152167	619308.0	Mm.490456	NM_001033812		F830208F22Rik	-	RIKEN cDNA F830208F22 gene	ncRNA	0.63541305996253	0.274153806178521	0.598373417732459	0.802817652637024	0.254608647599628	0.27568702373862	0.268845618624763	0.997186562417206	-0.509111096574915	0.791224951132532	1
Merged-chr5-90900386-4	chr5	90900274	90900474	+	985.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3525.0	NM_009140	20310.0	Mm.4979	NM_009140	ENSMUSG00000058427	Cxcl2	CINC-2a|GROb|Gro2|MIP-2|MIP-2a|Mgsa-b|Mip2|Scyb|Scyb2	chemokine (C-X-C motif) ligand 2	protein-coding	3.71892449071996	3.52022940357258	2.92589933265637	2.83896620674034	1.75202165766056	4.0637571300301	2.94997520677511	2.85447684733444	-0.240719320606599	0.738318544596388	0.998431161219273
Merged-chr17-26663108-4	chr17	26662991	26663191	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13305.0	NM_025272	11974.0	Mm.22602	NM_025272	ENSMUSG00000015575	Atp6v0e	Atp6k|Atp6v0e1|M9.2	ATPase, H+ transporting, lysosomal V0 subunit E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-147517889-2	chr4	147517789	147517989	+	564.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35388.0	NM_001014397	433804.0	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154	zinc finger protein 985	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-79857697-4	chr10	79857660	79857860	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077363, intron 2 of 13)	intron (NM_001077363, intron 2 of 13)	-2789.0	NR_029447	414101.0	Mm.401339	NR_029447	ENSMUSG00000091994	E130317F20Rik	-	RIKEN cDNA E130317F20 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-47335020-3	chr14	47334937	47335137	+	850.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36763.0	NM_001360542	218975.0	Mm.212297	NM_178684	ENSMUSG00000021840	Mapk1ip1l	9130202B12|C130032J12Rik	mitogen-activated protein kinase 1 interacting protein 1-like	protein-coding	1.64189316616034	1.7033845387432	2.11589990187322	1.05076298750674	1.65570406021979	1.99320733676263	2.13375136260422	1.05371865422074	0.261246287350664	0.823437052430117	0.998431161219273
Merged-chr5-91000133-4	chr5	91000021	91000221	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026788, intron 6 of 7)	intron (NM_026788, intron 6 of 7)	-27396.0	NM_053087	71920.0	Mm.197319	NM_053087	ENSMUSG00000035020	Epgn	2310069M11Rik|epigen	epithelial mitogen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-97238683-4	chr3	97238575	97238775	+	951.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4|LINE|L1	-11311.0	NM_029933	77578.0	Mm.226175	NM_029933	ENSMUSG00000038256	Bcl9	2610202E01Rik|8030475K17Rik|A330041G23Rik|Gm130	B cell CLL/lymphoma 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-137825271-4	chr5	137825157	137825357	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153510, intron 4 of 6)	intron (NM_153510, intron 4 of 6)	11021.0	NM_153510	231805.0	Mm.379385	NM_153510	ENSMUSG00000046245	Pilra	AV021745|FDF03	paired immunoglobin-like type 2 receptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-122368276-2	chr2	122368190	122368390	+	752.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013829, intron 1 of 5)	intron (NM_001013829, intron 1 of 5)	628.0	NM_001013829	435684.0	Mm.458215	NM_001013829	ENSMUSG00000033256	Shf	-	Src homology 2 domain containing F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-62104800-4	chr15	62104697	62104897	+	976.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132746, intron 1 of 6)	intron (NR_132746, intron 1 of 6)	65540.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-121404825-1	chr1	121404725	121404925	+	595.0	f0_balb.idr	Intergenic	Lx9|LINE|L1	-26242.0	NM_001025156	70829.0	Mm.25788	NM_027567	ENSMUSG00000026339	Ccdc93	4633402D15Rik|9230102M16Rik	coiled-coil domain containing 93	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84668088-2	chr8	84667820	84668020	+	839.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5068.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	-1.20406370813143	-1.56956373024278	-1.57884638916872	-1.58647144159385	-1.598104728449	-1.56755213932999	-1.57674499865798	-1.58510656085539	-1.70745470802464	0.626337835847419	1
Merged-chr19-6857486-4	chr19	6857355	6857555	+	866.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081291, exon 3 of 27)	exon (NM_001081291, exon 3 of 27)	756.0	NM_001081291	78317.0	Mm.329596	NM_198008	ENSMUSG00000047810	Ccdc88b	2610041P08Rik|Ccdc88	coiled-coil domain containing 88B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-15345352-1	chr10	15345252	15345452	+	577.0	f1_c57bl6.idr	Intergenic	L1_Mus4|LINE|L1	-446425.0	NR_131087	77538.0	Mm.128235	NR_131087	ENSMUSG00000112227	C330004P14Rik	-	RIKEN cDNA C330004P14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-86978670-4	chr17	86978581	86978781	+	980.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145491, intron 2 of 4)	ORR1A4|LTR|ERVL-MaLR	15570.0	NM_145491	104215.0	Mm.826	NM_145491	ENSMUSG00000024143	Rhoq	Arhq|TC10A|Tc10	ras homolog family member Q	protein-coding	-0.0732378647884561	0.167551321938946	0.960698081956845	-0.0641709024112808	-0.0718812854487923	0.509865690727765	-0.057229690994707	-0.0632237750414692	-1.43944301990118	0.516527131496155	1
Merged-chr11-69334115-2	chr11	69334013	69334213	+	596.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-6656.0	NR_027827	80515.0	Mm.5324	NM_020591	ENSMUSG00000043419	Chd3os	2310043C11Rik|A030009H04Rik|AA589459|AB041807|MNCb-2875|RNF21	chromodomain helicase DNA binding protein 3, opposite strand	ncRNA	-1.84362945061595	-1.81329140012928	-1.67810947190254	-1.83000206547234	-1.84149977556685	-1.81130325271815	-1.67603257143677	-1.82865309133977	0.037684011990387	0.991491645451152	1
Merged-chr12-84614739-4	chr12	84614629	84614829	+	950.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008992, intron 3 of 18)	intron (NM_008992, intron 3 of 18)	2737.0	NM_008992	19300.0	Mm.229109	NM_008992	ENSMUSG00000021240	Abcd4	P69r|P70R|Pxmp1l	ATP-binding cassette, sub-family D (ALD), member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-122995581-4	chr4	122995471	122995671	+	853.2708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001303121)	promoter-TSS (NM_001303121)	-360.0	NM_001303121	16918.0	Mm.1055	NM_008506	ENSMUSG00000028654	Mycl	AW536278|L-myc|Lmyc-1|Lmyc1|Mycl1|bHLHe38	v-myc avian myelocytomatosis viral oncogene lung carcinoma derived	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-100022250-4	chr12	100022152	100022352	+	862.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164426, intron 2 of 2)	ID2|SINE|ID	57753.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-166340862-2	chr1	166340762	166340962	+	780.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	-38305.0	NM_030245	27878.0	Mm.100665	NM_030245	ENSMUSG00000026563	Tada1	2900026B15Rik|D1Ertd251e|Staf42|Tada1l	transcriptional adaptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71529199-3	chr17	71529089	71529289	+	821.944458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2332.0	NM_023294	67052.0	Mm.225956	NM_023294	ENSMUSG00000024056	Ndc80	2610020P18Rik|AV139730|HEC|HEC1|Kntc2	NDC80 kinetochore complex component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-70969960-4	chr12	70969861	70970061	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-4662.0	NM_001310595	19167.0	Mm.296338	NM_011184	ENSMUSG00000060073	Psma3	Lmpc8	proteasome (prosome, macropain) subunit, alpha type 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-9627773-2	chr4	9627673	9627873	+	808.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001177856)	TTS (NM_001177856)	15944.0	NM_001177853	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-60176223-2	chr13	60176123	60176323	+	666.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_008086, exon 1 of 1)	exon (NM_008086, exon 1 of 1)	1312.0	NM_008086	14451.0	Mm.22701	NM_008086	ENSMUSG00000052957	Gas1	AW554192|Gas-1	growth arrest specific 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-153969361-3	chr1	153969264	153969464	+	611.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	69435.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-52940158-2	chr2	52940032	52940232	+	706.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	82264.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-164797142-2	chr2	164797042	164797242	+	959.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133240, intron 3 of 5)	intron (NM_133240, intron 3 of 5)	7739.0	NM_133240	170789.0	Mm.277878	NM_133240	ENSMUSG00000017307	Acot8	PTE-2|Pte1	acyl-CoA thioesterase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-17542633-3	chr6	17542543	17542743	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008591, intron 12 of 21)	intron (NM_008591, intron 12 of 21)	78686.0	NM_008591	17295.0	Mm.86844	NM_008591	ENSMUSG00000009376	Met	AI838057|HGF|HGFR|Par4|c-Met	met proto-oncogene	protein-coding	2.71143918643846	2.7919265335913	2.98889445631491	2.74577165439811	4.50348727413064	4.36096752265596	5.17166467617432	4.77328476357342	2.72662582633758	4.13307735525913e-08	4.10955763329274e-06
Merged-chr4-95303517-4	chr4	95303410	95303610	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-251288.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	3.25198111929079	4.16444551874774	4.19730136118339	4.40063396335517	2.88896117450336	3.26840437490901	3.15348775915471	4.05542999950195	-0.928095943681172	0.0873562327041967	0.45416156997065
Merged-chr3-89091956-2	chr3	89091856	89092056	+	738.166687	f1_balb.idr|f1_c57bl6.idr	exon (NM_001083807, exon 2 of 10)	exon (NM_001083807, exon 2 of 10)	1407.0	NM_001083807	72296.0	Mm.27687	NM_028188	ENSMUSG00000041263	Rusc1	2210403N08Rik|AA408288|NESCA	RUN and SH3 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-72833203-2	chr5	72833103	72833303	+	559.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013689, intron 1 of 17)	intron (NM_013689, intron 1 of 17)	35245.0	NM_001113461	21682.0	Mm.319581	NM_013689	ENSMUSG00000029217	Tec	-	tec protein tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-103691712-4	chr5	103691607	103691807	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35975.0	NM_001163550	74218.0	Mm.159141	NM_028824	ENSMUSG00000029320	1700016H13Rik	-	RIKEN cDNA 1700016H13 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-88640236-2	chr6	88640136	88640336	+	603.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12788.0	NM_001278671	74589.0	Mm.196226	NM_029013	ENSMUSG00000033182	Kbtbd12	4833415F11Rik|4933428M03Rik|Klhdc6	kelch repeat and BTB (POZ) domain containing 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-34779529-3	chr12	34779438	34779638	+	771.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271386, intron 3 of 27)	intron (NM_001271386, intron 3 of 27)	137557.0	NM_001271386	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	1.68119361422901	1.36722701308981	1.95291212363742	2.00297200350906	1.80899694639562	1.12008427146726	1.3368508378813	2.56475182323187	0.225211501859941	0.839617556729567	0.998431161219273
Merged-chr11-118354361-2	chr11	118354261	118354461	+	636.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011594, intron 1 of 4)	intron (NM_011594, intron 1 of 4)	1050.0	NM_011594	21858.0	Mm.206505	NM_011594	ENSMUSG00000017466	Timp2	D11Bwg1104e|Timp-2	tissue inhibitor of metalloproteinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-22124424-3	chr8	22124337	22124537	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177898, intron 1 of 19)	intron (NM_177898, intron 1 of 19)	630.0	NM_177898	330721.0	Mm.113940	NM_177898	ENSMUSG00000037738	Nek5	6530411J22|BB049667	NIMA (never in mitosis gene a)-related expressed kinase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-52500027-4	chr1	52499924	52500124	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008667, intron 1 of 7)	intron (NM_008667, intron 1 of 7)	424.0	NM_008667	17936.0	Mm.25903	NM_008667	ENSMUSG00000002881	Nab1	-	Ngfi-A binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-83215139-4	chr17	83215035	83215235	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134117)	promoter-TSS (NM_134117)	-148.0	NM_134117	106522.0	Mm.311974	NM_134117	ENSMUSG00000024247	Pkdcc	AI115348|AW548124|Adtk1|ESTM17|MAd1|Sgk493|Vlk|X83346	protein kinase domain containing, cytoplasmic	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-61934818-3	chr11	61934725	61934925	+	975.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MYSERV6-int|LTR|ERVK	-4568.0	NM_019921	56697.0	Mm.274404	NM_019921	ENSMUSG00000047804	Akap10	1500031L16Rik|B130049N18Rik|D-AKAP-2|D-AKAP2|PRKA10	A kinase (PRKA) anchor protein 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-9160609-2	chr13	9160509	9160709	+	984.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172585, intron 13 of 17)	B4|SINE|B4	66728.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-105646110-1	chr12	105646010	105646210	+	541.0	f1_balb.idr	intron (NM_029654, intron 23 of 41)	intron (NM_029654, intron 23 of 41)	39131.0	NM_029654	76559.0	Mm.114362	NM_029654	ENSMUSG00000041341	Atg2b	2410024A21Rik|AI047755|AI503411|AW558123|C030004M05Rik|C630028L02Rik|mKIAA4067	autophagy related 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-73148919-4	chr15	73148816	73149016	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153178, intron 1 of 18)	intron (NM_153178, intron 1 of 18)	36031.0	NM_153178	239528.0	Mm.23095	NM_153178	ENSMUSG00000036698	Ago2	1110029L17Rik|2310051F07Rik|AI225898|AL022874|AW546247|Eif2c2|Gerp95|Gm10365|mKIAA4215	argonaute RISC catalytic subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-36094951-5	chr8	36094818	36095018	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172911)	promoter-TSS (NM_172911)	90.0	NM_172911	244418.0	Mm.244971	NM_172911	ENSMUSG00000050271	Prag1	9830148H23|D8Ertd82e|NACK|Sgk223|mFLJ00269	PEAK1 related kinase activating pseudokinase 1	protein-coding	3.63363184988034	3.6822626024053	3.97396011088911	2.43602160293919	2.7094034886974	3.47149494437251	3.26694907965912	1.56697800426502	-0.982206272222814	0.172925717413227	0.640902961210202
Merged-chr11-97704383-2	chr11	97704283	97704483	+	558.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011971, intron 2 of 5)	intron (NM_011971, intron 2 of 5)	949.0	NM_011971	26446.0	Mm.21874	NM_011971	ENSMUSG00000069744	Psmb3	AL033320|C10-II	proteasome (prosome, macropain) subunit, beta type 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-51608330-2	chr11	51608230	51608430	+	594.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1449.0	NM_010448	15384.0	Mm.256875	NM_010448	ENSMUSG00000020358	Hnrnpab	3010025C11Rik|CBF-A|Cgbfa|Hnrpab	heterogeneous nuclear ribonucleoprotein A/B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-20144345-2	chr13	20144245	20144445	+	669.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	53838.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-88968721-1	chr11	88968621	88968821	+	719.0	f1_c57bl6.idr	Intergenic	RMER16B2|LTR|ERVK	-1790.0	NM_001360780	217066.0	Mm.347543	NM_001025564	ENSMUSG00000057534	Elobl	Gm15698|Tceb2l	elongin B-like	protein-coding	0.281196172508582	-0.423919908796067	-0.428017817760387	-0.431178095018242	0.0485166479126916	-0.422995900842417	-0.427114167970174	-0.430626087670181	-0.7465883647168	0.784628556302681	1
Merged-chr10-94082491-4	chr10	94082384	94082584	+	917.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053072, intron 3 of 20)	LTR48|LTR|ERV1	46483.0	NM_053072	13998.0	Mm.269596	NM_053072	ENSMUSG00000020021	Fgd6	AA123052|Etohd4|ZFYVE24	FYVE, RhoGEF and PH domain containing 6	protein-coding	0.119308327035745	0.188816368920164	-0.0188171279084456	-0.0233880104079517	-0.0298691164905489	0.508100177464932	0.78399579075799	-0.0225885878342258	2.3931804316837	0.264221840368787	1
Merged-chr17-45629292-3	chr17	45629195	45629395	+	919.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001013767)	TTS (NM_001013767)	-27193.0	NM_001177469	653016.0	Mm.45676	NM_001177468	ENSMUSG00000079471	Mymx	EG653016|Esgp|Gm7325|minion|myomerger	myomixer, myoblast fusion factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-106367183-4	chr9	106367101	106367301	+	924.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1431.0	NM_153459	235584.0	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89454287-2	chr3	89454187	89454387	+	586.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310640)	promoter-TSS (NM_001310640)	-254.0	NM_001310640	68603.0	Mm.34242	NM_026784	ENSMUSG00000027952	Pmvk	1110011E12Rik|2900002L22Rik|AV001327|PMK|PMKA|PMKASE	phosphomevalonate kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88384261-2	chr3	88384161	88384361	+	705.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007541, intron 1 of 3)	intron (NM_007541, intron 1 of 3)	205.0	NM_007541	12096.0	Mm.389459	NM_007541	ENSMUSG00000074483	Bglap	BGP|Bglap1|OC|OG1|mOC-A	bone gamma carboxyglutamate protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120576494-3	chr8	120576387	120576587	+	743.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_198671, exon 14 of 16)	exon (NM_198671, exon 14 of 16)	12588.0	NM_178856	272551.0	Mm.275910	NM_178856	ENSMUSG00000031821	Gins2	2210013I18Rik|4833427B12Rik|AI323585|Pfs2	GINS complex subunit 2 (Psf2 homolog)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96161651-2	chr3	96161551	96161751	+	855.400024	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181409)	promoter-TSS (NM_181409)	-319.0	NM_181409	194126.0	Mm.268536	NM_181409	ENSMUSG00000045934	Mtmr11	AI035306|BC051083|Cra	myotubularin related protein 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-61078958-2	chr18	61078858	61079058	+	901.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001146268, exon 18 of 23)	exon (NM_001146268, exon 18 of 23)	-26614.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-13112316-2	chr2	13112216	13112416	+	573.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009105, intron 8 of 8)	intron (NM_009105, intron 8 of 8)	-101452.0	NM_153155	227580.0	Mm.229322	NM_153155	ENSMUSG00000049630	C1ql3	1110065A22Rik|AI661623|C1ql|C1qtnf13|CTRP13|K100	C1q-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-29229432-6	chr7	29229393	29229593	+	880.236084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033525, intron 1 of 2)	intron (NM_001033525, intron 1 of 2)	3029.0	NM_001033525	52150.0	Mm.24877	NM_001033525	ENSMUSG00000046410	Kcnk6	D7Ertd764e|Toss|Twik2	potassium inwardly-rectifying channel, subfamily K, member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96254098-2	chr3	96253998	96254198	+	828.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	7398.0	NM_054045	97114.0	Mm.358797	NM_054045	ENSMUSG00000081058	Hist2h3c2	H3-614|H3.2-614|Hist2h3c2-ps|Hist2h3ca1|M32461	histone cluster 2, H3c2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-107895840-4	chr3	107895758	107895958	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010360)	promoter-TSS (NM_010360)	4.0	NM_010360	14866.0	Mm.282351	NM_010360	ENSMUSG00000004032	Gstm5	-	glutathione S-transferase, mu 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-144569757-3	chr3	144569611	144569811	+	949.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053102)	promoter-TSS (NM_053102)	505.0	NM_011828	23908.0	Mm.12863	NM_011828	ENSMUSG00000040151	Hs2st1	2OST|AW214369|Hs2st|mKIAA0448	heparan sulfate 2-O-sulfotransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-6440553-2	chr7	6440453	6440653	+	575.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_177061, exon 1 of 1)	exon (NM_177061, exon 1 of 1)	651.0	NM_177061	257882.0	Mm.479489	NM_177061	ENSMUSG00000090824	Olfr1344	4930415J05Rik|MOR124-1	olfactory receptor 1344	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-5542883-4	chr11	5542771	5542971	+	929.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134033)	promoter-TSS (NM_134033)	-654.0	NM_134033	104479.0	Mm.210403	NM_134033	ENSMUSG00000020482	Ccdc117	1110004K02Rik|1700026O03Rik|AU018638|AU042822|AV173073|BC018601	coiled-coil domain containing 117	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-80808332-3	chr8	80808229	80808429	+	727.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021356, intron 1 of 9)	intron (NM_021356, intron 1 of 9)	-68870.0	NM_053124	93762.0	Mm.246803	NM_053124	ENSMUSG00000031715	Smarca5	4933427E24Rik|D030040M08Rik|D330027N15Rik|MommeD4|Snf2h	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133918594-3	chr4	133918503	133918703	+	739.722229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR10-int|LTR|ERVK	-30806.0	NM_009097	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-45754384-2	chr17	45754284	45754484	+	987.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_152153, intron 2 of 4)	intron (NR_152153, intron 2 of 4)	19878.0	NR_152153	433111.0	Mm.213441	NR_152153	ENSMUSG00000097727	F630040K05Rik	-	RIKEN cDNA F630040K05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-107991859-2	chr13	107991759	107991959	+	631.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52615.0	NM_001048250	75616.0	Mm.491164	NM_001048250	ENSMUSG00000071180	Smim15	2810008M24Rik	small integral membrane protein 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88685399-4	chr3	88685291	88685491	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028814)	promoter-TSS (NM_028814)	-396.0	NM_028814	74200.0	Mm.251800	NM_028814	ENSMUSG00000028060	2810403A07Rik	A430106P18Rik|AI256352|AI451678|Blom7|Khdc4|Kiaa0907	RIKEN cDNA 2810403A07 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-97794553-1	chr7	97794453	97794653	+	544.0	f1_balb.idr	intron (NM_001357364, intron 1 of 14)	intron (NM_001357364, intron 1 of 14)	6012.0	NM_001357364	18479.0	Mm.260227	NM_011035	ENSMUSG00000030774	Pak1	AW045634|PAK-1|Paka	p21 (RAC1) activated kinase 1	protein-coding	1.51626782977214	0.986171423180101	1.51746174430529	1.71383220142809	1.52920476898148	0.9900023956316	2.15481739109505	1.4818929515306	0.507220190098329	0.679176030479193	0.99525161242239
Merged-chr11-69752253-2	chr11	69752153	69752353	+	710.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291068, intron 1 of 28)	intron (NM_001291068, intron 1 of 28)	6380.0	NM_001291068	20020.0	Mm.16533	NM_009089	ENSMUSG00000005198	Polr2a	220kDa|Rpb1|Rpo2-1	polymerase (RNA) II (DNA directed) polypeptide A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-40356139-3	chr1	40356042	40356242	+	955.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356478, intron 8 of 10)	intron (NM_001356478, intron 8 of 10)	31553.0	NM_133193	107527.0	Mm.155583	NM_133193	ENSMUSG00000070942	Il1rl2	AI481289|AW551444|IL-1Rrp2	interleukin 1 receptor-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-86820958-2	chr6	86820858	86821058	+	770.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27374.0	NM_013471	11746.0	Mm.259702	NM_013471	ENSMUSG00000029994	Anxa4	AI265406|AIV|AW106930|Anx4|Xanx-4	annexin A4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-70999750-4	chr12	70999649	70999849	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045055, intron 3 of 3)	intron (NR_045055, intron 3 of 3)	16074.0	NR_045056	73204.0	Mm.363770	NR_045055	ENSMUSG00000085622	3110056K07Rik	4921536K06Rik	RIKEN cDNA 3110056K07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-4771871-2	chr4	4771771	4771971	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177730, intron 3 of 4)	B3A|SINE|B2	21435.0	NM_177730	242291.0	Mm.218889	NM_177730	ENSMUSG00000066324	Impad1	1110001C20Rik|AA408880|AI451589|AL022796|B230207P20|Jaws|gPAPP	inositol monophosphatase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-32625868-1	chr11	32625768	32625968	+	579.0	f0_c57.idr	Intergenic	Intergenic	-16687.0	NM_001271348	103583.0	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-110557191-4	chr7	110557097	110557297	+	998.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177324, intron 2 of 40)	intron (NM_177324, intron 2 of 40)	57723.0	NM_177324	319934.0	Mm.102970	NM_177324	ENSMUSG00000038371	Sbf2	4833411B01Rik|AA414977|AI317167|B430219L04Rik|Mtmr13|mMTMH1	SET binding factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-36697802-3	chr16	36697704	36697904	+	893.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285788, intron 1 of 7)	intron (NM_001285788, intron 1 of 7)	3826.0	NM_001285791	106347.0	Mm.17807	NM_134109	ENSMUSG00000022900	Ildr1	AU041483|AU044638	immunoglobulin-like domain containing receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-77793394-2	chr18	77793294	77793494	+	605.25	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_152167, exon 3 of 3)	non-coding (NR_152167, exon 3 of 3)	-1156.0	NM_013831	19201.0	Mm.57174	NM_013831	ENSMUSG00000025429	Pstpip2	MAYP|cmo	proline-serine-threonine phosphatase-interacting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-21379115-3	chr5	21379000	21379200	+	731.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008013)	TTS (NM_008013)	6427.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-37963904-2	chr19	37963812	37964012	+	1000.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_001302140, intron 19 of 53)	intron (NM_001302140, intron 19 of 53)	79665.0	NM_001099634	226101.0	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding	3.09477028322043	2.2651991327148	2.96408594284806	3.4905781148606	3.68874998005284	4.10239972586335	3.4673390930128	2.32002818850691	0.80991423505839	0.221124192949701	0.712291408719486
Merged-chr5-143375328-2	chr5	143375228	143375428	+	734.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001159321, exon 6 of 22)	exon (NM_001159321, exon 6 of 22)	5236.0	NM_001347529	170935.0	Mm.197460	NM_133355	ENSMUSG00000010825	Grid2ip	-	glutamate receptor, ionotropic, delta 2 (Grid2) interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-85245051-1	chr1	85244951	85245151	+	747.5	f1_balb.idr	Intergenic	Intergenic	25515.0	NM_175219	620078.0	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik	RIKEN cDNA C130026I21 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-25801228-4	chr17	25801172	25801372	+	992.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4227.0	NM_133719	70083.0	Mm.41925	NM_133719	ENSMUSG00000002274	Metrn	1810034B16Rik|EyeLinc16|Hyrac	meteorin, glial cell differentiation regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-14234211-4	chr2	14234119	14234319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008625, intron 1 of 29)	LTR16C|LTR|ERVL	4805.0	NM_008625	17533.0	Mm.2019	NM_008625	ENSMUSG00000026712	Mrc1	AW259686|CD206|MR	mannose receptor, C type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-45652164-2	chr19	45652064	45652264	+	842.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013907, intron 1 of 8)	intron (NM_013907, intron 1 of 8)	8029.0	NM_013907	30838.0	Mm.254739	NM_013907	ENSMUSG00000040913	Fbxw4	Dac|Fbw4|SHFM3|SHSF3|dactylin|dactylyn	F-box and WD-40 domain protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-91412649-2	chr1	91412549	91412749	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360900, intron 3 of 3)	CpG	573.0	NM_019479	55927.0	Mm.280029	NM_019479	ENSMUSG00000067071	Hes6	AI326893|bHLHb41	hairy and enhancer of split 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139775735-4	chr5	139775644	139775844	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026748)	promoter-TSS (NM_026748)	-66.0	NM_026748	68510.0	Mm.292942	NM_026748	ENSMUSG00000029547	Ints1	1110015K06Rik	integrator complex subunit 1	protein-coding	3.72061393350568	2.00827548725282	2.53475552713846	3.23553321173498	3.01262590062338	3.70008677804026	3.6493518264841	2.97667169396664	0.519552490116901	0.444353508581345	0.912265842646861
Merged-chr16-33911302-2	chr16	33911202	33911402	+	780.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 9 of 14)	B1_Mus1|SINE|Alu	55736.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100730676-4	chr11	100730577	100730777	+	863.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305003, intron 1 of 5)	intron (NM_001305003, intron 1 of 5)	7538.0	NM_024456	19345.0	Mm.29829	NM_024456	ENSMUSG00000019173	Rab5c	AI326010|Rabl	RAB5C, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-103346036-3	chr14	103345937	103346137	+	849.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207215, intron 1 of 84)	(CA)n|Simple_repeat|Simple_repeat	763.0	NM_207215	105689.0	Mm.6478	NM_207215	ENSMUSG00000033004	Mycbp2	AU023734|AW107953|AW546647|C130061D10Rik|Pam|Phr1|R75243	MYC binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-36670495-2	chr16	36670395	36670595	+	836.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-4418.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-98320210-4	chr12	98320086	98320286	+	836.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51551.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-103510986-2	chr15	103510886	103511086	+	780.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357980, intron 1 of 14)	intron (NM_001357980, intron 1 of 14)	3860.0	NM_001357980	18574.0	Mm.390792	NM_008800	ENSMUSG00000022489	Pde1b	Pde1b1	phosphodiesterase 1B, Ca2+-calmodulin dependent	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-31429864-4	chr16	31429740	31429940	+	954.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_152205)	promoter-TSS (NR_152205)	-64.0	NR_152205	100047123.0	Mm.466711	NR_152205		Gm15743	-	predicted gene 15743	ncRNA	2.72178521755196	1.89385720703065	2.62487590150563	2.34889905623091	2.67563149722345	2.73752997185214	1.37629437227726	1.79301479100924	-0.340542458080216	0.711666612119085	0.998431161219273
Merged-chr10-80755083-4	chr10	80754980	80755180	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199322)	promoter-TSS (NM_199322)	-123.0	NM_199322	208266.0	Mm.152371	NM_199322	ENSMUSG00000061589	Dot1l	A630076O07|AW907654|Dot1|KMT4|mDot1	DOT1-like, histone H3 methyltransferase (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-144137686-3	chr3	144137612	144137812	+	992.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	64620.0	NM_001161770	16911.0	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-50128234-4	chr18	50128118	50128318	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008292)	promoter-TSS (NM_008292)	17.0	NM_008292	15488.0	Mm.277857	NM_008292	ENSMUSG00000024507	Hsd17b4	17-beta-HSD|17[b]-HSD|DBP|MFE-2|MFP2|MPF-2|Mfp-2|perMFE-2	hydroxysteroid (17-beta) dehydrogenase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-106017310-1	chr8	106017210	106017410	+	613.0	f0_balb.idr	intron (NM_001301176, intron 2 of 14)	intron (NM_001301176, intron 2 of 14)	-5824.0	NM_028038	71986.0	Mm.307515	NM_028038	ENSMUSG00000045538	Ddx28	2410004K13Rik|AI449652|Mddx28	DEAD (Asp-Glu-Ala-Asp) box polypeptide 28	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-122274962-2	chr3	122274861	122275061	+	650.5	f0_balb.idr|f0_c57.idr	intron (NM_153806, intron 1 of 6)	intron (NM_153806, intron 1 of 6)	547.0	NM_153806	99480.0	Mm.398647	NM_153806	ENSMUSG00000039756	Dnttip2	4930588M11Rik|AA408582|AU014960|HSU15552	deoxynucleotidyltransferase, terminal, interacting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126785212-2	chr7	126785112	126785312	+	717.666626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001360464)	TTS (NM_001360464)	3729.0	NM_011538	21389.0	Mm.727	NM_011538	ENSMUSG00000030699	Tbx6	rv	T-box 6	protein-coding	2.35425120334118	2.09643728081062	1.26548897033396	2.39852834891553	2.37415670647914	2.11200171995724	1.27192099432012	2.41114304769882	0.0362275827336945	0.972076994216067	0.998431161219273
Merged-chr11-105311769-3	chr11	105311660	105311860	+	835.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008626, intron 1 of 29)	intron (NM_008626, intron 1 of 29)	19114.0	NM_008626	17534.0	Mm.235616	NM_008626	ENSMUSG00000020695	Mrc2	Endo180|mKIAA0709|uPARAP	mannose receptor, C type 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-124612495-4	chr2	124612444	124612644	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291000, intron 1 of 18)	intron (NM_001291000, intron 1 of 18)	2248.0	NM_172537	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-89719537-1	chr12	89719437	89719637	+	542.0	f1_c57bl6.idr	intron (NM_001198587, intron 14 of 19)	intron (NM_001198587, intron 14 of 19)	-92946.0	NM_001252074	18191.0	Mm.425766	NM_172544	ENSMUSG00000066392	Nrxn3	-	neurexin III	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-86637915-3	chr11	86637801	86638001	+	859.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356531, intron 6 of 11)	intron (NM_001356531, intron 6 of 11)	33374.0	NM_001356531	75909.0	Mm.390398	NM_029478	ENSMUSG00000018171	Vmp1	3110098I04Rik|4930579A11Rik|AI787464|Tango5|Tmem49|mir-21a|ni-2	vacuole membrane protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-72166261-2	chr5	72166161	72166361	+	797.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_178599, intron 1 of 4)	intron (NM_178599, intron 1 of 4)	1928.0	NM_001356611	27784.0	Mm.44223	NM_178599	ENSMUSG00000029213	Commd8	C77770|D5Buc26e	COMM domain containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-10848973-4	chr17	10848859	10849059	+	985.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001317726, intron 1 of 6)	intron (NM_001317726, intron 1 of 6)	8600.0	NM_016694	50873.0	Mm.311110	NM_016694	ENSMUSG00000023826	Park2	PRKN	Parkinson disease (autosomal recessive, juvenile) 2, parkin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-87488106-4	chr3	87487967	87488167	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113238, intron 11 of 11)	intron (NM_001113238, intron 11 of 11)	-37511.0	NM_001083318	27049.0	Mm.219460	NM_012051	ENSMUSG00000003382	Etv3	AI414410|METS|Pe1	ets variant 3	protein-coding	4.32918150468344	4.4513403595773	4.30895198387286	5.21628661116516	4.12415453457652	4.54001992998024	4.60486337742235	4.324055207705	-0.292481076510632	0.462611018663753	0.921194606787634
Merged-chr14-43984123-4	chr14	43984010	43984210	+	821.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22308.0	NM_001011876	630952.0		NM_001011876	ENSMUSG00000072598	Ang6	EG630952	angiogenin, ribonuclease A family, member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52115075-2	chr13	52114975	52115175	+	840.416626	f1_balb.idr|f1_c57bl6.idr	intron (NR_045061, intron 3 of 7)	ORR1E|LTR|ERVL-MaLR	18334.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-3199713-4	chr11	3199598	3199798	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2655.0	NM_001166548	74203.0	Mm.255649	NM_023743	ENSMUSG00000020454	Eif4enif1	2610509L04Rik|A930019J01Rik|AA410001|AU021239|Clast4|D11Ertd166e	eukaryotic translation initiation factor 4E nuclear import factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-49857723-4	chr16	49857648	49857848	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010581, intron 1 of 9)	intron (NM_010581, intron 1 of 9)	2094.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-37883295-2	chr18	37883195	37883395	+	698.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007858, intron 16 of 26)	intron (NM_007858, intron 16 of 26)	-28635.0	NR_105945	102465592.0		NR_105945	ENSMUSG00000098706	Mir6979	Gm27524|mmu-mir-6979	microRNA 6979	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-77031485-2	chr10	77031385	77031585	+	592.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1254.0	NM_001199271	20509.0	Mm.265060	NM_031196	ENSMUSG00000001436	Slc19a1	AI323572|RFC|RFC-1|RFC1	solute carrier family 19 (folate transporter), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-15967353-2	chr14	15967253	15967453	+	672.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	275978.0	NM_001359883	71147.0	Mm.197960	NM_027695	ENSMUSG00000021786	Oxsm	4933425A18Rik|C80494	3-oxoacyl-ACP synthase, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-84062691-2	chr9	84062591	84062791	+	775.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_199195, intron 8 of 10)	intron (NM_199195, intron 8 of 10)	113910.0	NM_199195	12040.0	Mm.12819	NM_199195	ENSMUSG00000032263	Bckdhb	BCKDE1B|BCKDH E1-beta	branched chain ketoacid dehydrogenase E1, beta polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-136138544-4	chr1	136138557	136138757	+	997.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039472, intron 1 of 34)	intron (NM_001039472, intron 1 of 34)	7267.0	NR_153829	16565.0	Mm.276135	NM_019962	ENSMUSG00000041642	Kif21b	2610511N21Rik|mKIAA0449	kinesin family member 21B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-115142246-2	chr13	115142146	115142346	+	731.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40282.0	NM_001033228	109700.0	Mm.317280	NM_001033228	ENSMUSG00000042284	Itga1	CD49A|E130012M19Rik|Vla1	integrin alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-58417035-3	chr3	58416958	58417158	+	986.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081229, exon 1 of 4)	exon (NM_001081229, exon 1 of 4)	2338.0	NM_001347233	72033.0	Mm.218409	NM_001081229	ENSMUSG00000027806	Tsc22d2	1810043J12Rik|5530402M19Rik	TSC22 domain family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-76005866-1	chr3	76005766	76005966	+	555.0	f0_balb.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-48917.0	NM_001291069	73124.0	Mm.249232	NM_175193	ENSMUSG00000034109	Golim4	3110027H23Rik|GIMPC|GPP130|Golph4|P138	golgi integral membrane protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100545091-2	chr11	100544991	100545191	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028918)	promoter-TSS (NM_028918)	-541.0	NM_028918	74407.0	Mm.31590	NM_028918	ENSMUSG00000006784	Ttc25	4933404O19Rik	tetratricopeptide repeat domain 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-50894602-4	chr10	50894443	50894643	+	836.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1108.0	NM_011376	20464.0	Mm.4774	NM_011376	ENSMUSG00000019913	Sim1	bHLHe14|mSIM1	single-minded family bHLH transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-9107965-1	chr5	9107865	9108065	+	562.0	f0_balb.idr	intron (NM_001081029, intron 2 of 4)	intron (NM_001081029, intron 2 of 4)	7228.0	NM_001081029	652925.0	Mm.439954	NM_001081029	ENSMUSG00000079659	Tmem243	4930420K17Rik|E030031F02Rik	transmembrane protein 243, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-38206094-4	chr3	38206000	38206200	+	852.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040541, intron 2 of 2)	intron (NR_040541, intron 2 of 2)	2019.0	NR_040541	71342.0	Mm.410782	NR_040541	ENSMUSG00000106002	5430434I15Rik	-	RIKEN cDNA 5430434I15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118427570-2	chr11	118427470	118427670	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001204129)	promoter-TSS (NM_001204129)	-887.0	NM_001204129	56745.0	Mm.23845	NM_019959	ENSMUSG00000017446	C1qtnf1	1600017K21Rik|CTRP1|Zsig37	C1q and tumor necrosis factor related protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-75686116-2	chr2	75686032	75686232	+	789.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010902, intron 1 of 4)	intron (NM_010902, intron 1 of 4)	18531.0	NR_132727	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	0.905688701908671	0.647188325486433	0.827480910973961	1.47780932862804	1.0318688509661	0.649441738172557	0.99489695655781	1.31000216016824	0.0267677813230749	0.985560077708283	0.998431161219273
Merged-chr19-46306169-2	chr19	46306101	46306301	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NR_152247)	promoter-TSS (NR_152247)	271.0	NM_001177370	18034.0	Mm.102365	NM_019408	ENSMUSG00000025225	Nfkb2	NF-kappaB2|lyt|p49|p49/p100|p50B|p52	nuclear factor of kappa light polypeptide gene enhancer in B cells 2, p49/p100	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-8945299-3	chr10	8945197	8945397	+	838.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59227.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	1.44035386101843	2.24451753133492	1.84662050231951	1.36270551380126	0.913258275735339	2.35363726873424	0.963099993527892	1.36993671386335	-0.587081934496064	0.632226970739717	0.982230082053879
Merged-chr4-141663148-4	chr4	141663052	141663252	+	857.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347237, intron 1 of 18)	PB1D10|SINE|Alu	963.0	NM_001347237	69582.0	Mm.33220	NM_001033150	ENSMUSG00000028917	Plekhm2	2310034J19Rik|AI854247|mKIAA0842	pleckstrin homology domain containing, family M (with RUN domain) member 2	protein-coding	3.93164322825141	4.13881807873008	4.53247121800044	3.68628045616862	3.27802262795202	3.86982174488377	4.21862017488051	4.30352413151195	-0.1846913559402	0.695957368842635	0.997923870727665
Merged-chr12-84192517-4	chr12	84192478	84192678	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163501, intron 1 of 12)	intron (NM_001163501, intron 1 of 12)	1437.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-60779265-2	chr11	60779165	60779365	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_175491, exon 1 of 1)	exon (NM_175491, exon 1 of 1)	1740.0	NM_175491	237782.0	Mm.57726	NM_175491	ENSMUSG00000049323	Smcr8	2310076G09Rik|AI642055|D030073L15Rik	Smith-Magenis syndrome chromosome region, candidate 8 homolog (human)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-113792820-4	chr9	113792715	113792915	+	931.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286603)	promoter-TSS (NM_001286603)	-515.0	NM_001286603	76499.0	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	2.3591638526086	2.49944596800815	3.0745956273627	2.60559781932634	2.37855283788193	3.11103202741632	3.01069680577911	3.08491235990148	0.504099057773042	0.472636933966462	0.926125823511231
Merged-chr10-22058720-4	chr10	22058623	22058823	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	9356.0	NM_053264	114671.0	Mm.288194	NM_053264	ENSMUSG00000069712	4930444G20Rik	-	RIKEN cDNA 4930444G20 gene	protein-coding	7.62198172034487	8.22894916959129	7.09465711548993	7.70009145491822	6.3660289790289	6.42021940107666	6.10991047853458	6.8052110519816	-1.33056185847636	2.3594063868397e-09	3.53851972866285e-07
Merged-chr12-86905342-2	chr12	86905242	86905442	+	587.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20528.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-119844827-4	chr8	119844736	119844936	+	993.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4257.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-94052915-3	chr4	94052817	94053017	+	704.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	503879.0	NM_026368	67770.0	Mm.35170	NM_026368	ENSMUSG00000028578	Caap1	5830433M19Rik|AI536248|CAAP	caspase activity and apoptosis inhibitor 1	protein-coding	-0.213402624411238	-0.336667490479992	-0.172724533519204	-0.187961746947527	-0.20960484286981	0.258531034487881	-0.339633780722054	-0.342884888331904	0.984253074418029	0.65877953658747	1
Merged-chr2-103970114-4	chr2	103970029	103970229	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001142335)	promoter-TSS (NM_001142335)	-158.0	NM_008505	16909.0	Mm.29266	NM_008505	ENSMUSG00000032698	Lmo2	Rbtn-2|Rbtn2|Rhom-2|Ttg2	LIM domain only 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-78159449-3	chr10	78159356	78159556	+	834.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10312.0	NM_138601	28295.0	Mm.268691	NM_138601	ENSMUSG00000053329	D10Jhu81e	C21orf33|ES1	DNA segment, Chr 10, Johns Hopkins University 81 expressed	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-55447825-2	chr11	55447725	55447925	+	949.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009720, intron 3 of 3)	B2_Mm1t|SINE|B2	13383.0	NM_009720	11927.0	Mm.217759	NM_009720	ENSMUSG00000018585	Atox1	AI256639|Atx1	antioxidant 1 copper chaperone	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69769992-2	chr11	69769892	69770092	+	708.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029348, intron 1 of 3)	L2|LINE|L2	4080.0	NM_029348	75580.0	Mm.426361	NM_029348	ENSMUSG00000018750	Zbtb4	2310026P19Rik|9230111I22Rik|mKIAA1538	zinc finger and BTB domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-8783809-2	chr16	8783709	8783909	+	637.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45467.0	NM_001003918	252870.0	Mm.295330	NM_001003918	ENSMUSG00000022710	Usp7	2210010O09Rik|AA409944|AA617399|AU019296|AW548146|C80752|Hausp	ubiquitin specific peptidase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-7227408-2	chr19	7227308	7227508	+	792.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_027643, exon 8 of 8)	3' UTR (NM_027643, exon 8 of 8)	-9792.0	NM_007750	12868.0	Mm.14022	NM_007750	ENSMUSG00000035885	Cox8a	COX8L	cytochrome c oxidase subunit VIIIa	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-23225175-3	chr5	23225087	23225287	+	693.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081231, intron 3 of 3)	intron (NM_001081231, intron 3 of 3)	209166.0	NR_040469	269630.0	Mm.425231	NR_040469	ENSMUSG00000073147	5031425E22Rik	-	RIKEN cDNA 5031425E22 gene	ncRNA	-0.999004873958601	-1.11947659419295	-1.13046989609953	-0.605296720201681	-1.1420649015184	-1.11709429981014	-1.1279812535142	-1.13788371555445	-2.63305150711585	0.415139208447062	1
Merged-chr10-45277745-2	chr10	45277645	45277845	+	621.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	-11560.0	NM_024286	78977.0	Mm.24748	NM_024286	ENSMUSG00000019848	Popdc3	AA682104|Pop3	popeye domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52585976-2	chr13	52585876	52586076	+	700.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001198977, intron 1 of 13)	B3|SINE|B2	2539.0	NM_001198977	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-29842427-4	chr17	29842315	29842515	+	944.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081160, intron 8 of 15)	intron (NM_001081160, intron 8 of 15)	45467.0	NM_001081160	74762.0	Mm.40901	NM_001081160	ENSMUSG00000043557	Mdga1	1200011I03Rik|GPIM|Mamdc3	MAM domain containing glycosylphosphatidylinositol anchor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-113649846-4	chr5	113649723	113649923	+	978.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008153, intron 1 of 2)	intron (NM_008153, intron 1 of 2)	567.0	NM_008153	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-79711162-5	chr11	79711137	79711337	+	998.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029579)	promoter-TSS (NR_029579)	-732.0	NR_029579	387188.0		NR_029579	ENSMUSG00000065395	Mir193a	Mir193|Mirn193|mir-193a|mmu-mir-193|mmu-mir-193a	microRNA 193a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80275099-2	chr10	80274999	80275199	+	652.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_133188, intron 4 of 11)	intron (NM_133188, intron 4 of 11)	-3065.0	NR_105876	102466207.0		NR_105876	ENSMUSG00000098672	Mir6911	Gm27822|mmu-mir-6911	microRNA 6911	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-62782456-3	chr16	62782377	62782577	+	795.044434	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178925, intron 2 of 5)	intron (NM_178925, intron 2 of 5)	4239.0	NM_178925	106338.0	Mm.26321	NM_178925	ENSMUSG00000050312	Nsun3	6720484A09Rik|AU022521	NOL1/NOP2/Sun domain family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71209936-1	chr17	71209836	71210036	+	1000.0	f1_balb.idr	intron (NM_001164885, intron 1 of 19)	intron (NM_001164885, intron 1 of 19)	5282.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	-0.588632017044744	-0.577466294420423	-0.581128450693353	-0.58395123779165	-0.0158743677738079	-0.0727954936021909	-0.58032106793539	-0.583458273967166	3.41814813457983	0.218312946143755	1
Merged-chr4-67447994-3	chr4	67447875	67448075	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	620424.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-60492292-2	chr13	60492192	60492392	+	641.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-109655.0	NM_001285917	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	0.236813761087326	0.251258019438989	0.838029896247475	0.386389999862207	0.666653645905538	0.252342760906582	0.247526207643696	0.724208848708302	0.230508218798093	0.907533026528267	1
Merged-chr7-17090318-4	chr7	17090241	17090441	+	968.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310628, intron 1 of 5)	intron (NM_001310628, intron 1 of 5)	16301.0	NM_007676	26436.0	Mm.143686	NM_007676	ENSMUSG00000066760	Psg16	Cea11|PSG|bCEA	pregnancy specific glycoprotein 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32979154-2	chr2	32979054	32979254	+	556.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_151461, intron 1 of 5)	intron (NR_151461, intron 1 of 5)	2929.0	NR_151461	56017.0	Mm.305754	NM_019488	ENSMUSG00000026791	Slc2a8	D2Ertd44e|GLUT8|GlutX1	solute carrier family 2, (facilitated glucose transporter), member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-34857556-2	chr18	34857456	34857656	+	904.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-3651.0	NM_007913	13653.0	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-87683809-2	chr4	87683709	87683909	+	562.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	122514.0	NM_001286158	70122.0	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-87852474-2	chr1	87852374	87852574	+	566.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177646)	promoter-TSS (NM_177646)	-813.0	NM_177646	227333.0	Mm.277217	NM_177646	ENSMUSG00000070738	Dgkd	AI841987|D330025K09|DGKdelta|dgkd-2	diacylglycerol kinase, delta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122652090-2	chr5	122651990	122652190	+	662.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001284402, intron 1 of 12)	intron (NM_001284402, intron 1 of 12)	1666.0	NM_001284402	18439.0	Mm.42026	NM_011027	ENSMUSG00000029468	P2rx7	AI467586|P2X(7)|P2X7R	purinergic receptor P2X, ligand-gated ion channel, 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-31946652-2	chr16	31946552	31946752	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_027897)	TTS (NR_027897)	1869.0	NR_027897	106264.0	Mm.347369	NM_025320	ENSMUSG00000107002	0610012G03Rik	AI839730	RIKEN cDNA 0610012G03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-56801476-4	chr19	56801379	56801579	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_170757, intron 6 of 14)	intron (NM_170757, intron 6 of 14)	12204.0	NM_170757	213993.0	Mm.469677	NM_170757	ENSMUSG00000035173	Ccdc186	1810028B20Rik|A630007B06Rik|AI159700|Otg1	coiled-coil domain containing 186	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-53239793-2	chr15	53239693	53239893	+	909.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	106390.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-63606117-3	chr15	63605985	63606185	+	840.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-126477.0	NR_045279	432958.0	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3646228-4	chr4	3646150	3646350	+	861.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-10256.0	NR_040643	70143.0	Mm.417835	NR_040643	ENSMUSG00000085394	2210414B05Rik	-	RIKEN cDNA 2210414B05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70599663-4	chr14	70599544	70599744	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194345, intron 1 of 16)	CpG	191.0	NM_194345	239170.0	Mm.247582	NM_194345	ENSMUSG00000022095	Fam160b2	G430067P06Rik|Rai16	family with sequence similarity 160, member B2	protein-coding	4.81354106096713	5.10778829405202	4.95678530274281	4.44705162288069	4.56878152459896	5.14055420346466	4.91382909863296	3.76194976228625	-0.207317063281428	0.592457872480168	0.970274034155379
Merged-chr10-75798459-3	chr10	75798350	75798550	+	742.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358778)	promoter-TSS (NM_001358778)	134.0	NM_008185	14871.0	Mm.2746	NM_008185	ENSMUSG00000001663	Gstt1	AI255817|Gstt1-1	glutathione S-transferase, theta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-32748190-3	chr5	32748097	32748297	+	954.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177298, intron 3 of 7)	intron (NM_177298, intron 3 of 7)	-1855.0	NM_001347332	320951.0	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-131423770-3	chr2	131423674	131423874	+	809.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-68088.0	NM_001177834	228608.0	Mm.136586	NM_145533	ENSMUSG00000027333	Smox	B130066H01Rik|PAO|PAOh1|SMO	spermine oxidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-59460229-2	chr4	59460129	59460329	+	886.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21596.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52595010-4	chr13	52594908	52595108	+	952.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198977, intron 1 of 13)	intron (NM_001198977, intron 1 of 13)	-1874.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19175847-4	chr7	19175748	19175948	+	863.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347582)	promoter-TSS (NM_001347582)	-573.0	NM_001347582	72205.0	Mm.154121	NM_028153	ENSMUSG00000040811	Eml2	1600029N02Rik|EMAP-2	echinoderm microtubule associated protein like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-99189358-4	chr11	99189253	99189453	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34276.0	NM_007719	12775.0	Mm.2932	NM_007719	ENSMUSG00000037944	Ccr7	CC-CKR-7|CCR-7|CD197|Cdw197|Cmkbr7|EBI1|Ebi1h	chemokine (C-C motif) receptor 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-16568795-3	chr12	16568807	16569007	+	816.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001130412, intron 6 of 20)	intron (NM_001130412, intron 6 of 20)	20863.0	NM_015763	14245.0	Mm.153625	NM_015763	ENSMUSG00000020593	Lpin1	Lipin1|fld	lipin 1	protein-coding	0.313613530596917	0.793149987200855	0.185398044511599	0.180817058176157	0.734984351059807	0.385699180167452	0.186707758194017	0.483636706219471	0.438294065977517	0.816490318309968	1
Merged-chr18-36508648-3	chr18	36508575	36508775	+	742.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010415, intron 3 of 5)	intron (NM_010415, intron 3 of 5)	7130.0	NM_010415	15200.0	Mm.289681	NM_010415	ENSMUSG00000024486	Hbegf	AW047313|Dtr|Dts|Hegfl	heparin-binding EGF-like growth factor	protein-coding	-1.39239040096365	-1.50706362993767	-1.51637061241093	-1.52401564492204	-1.25712099376264	-1.5050467680107	-1.51426371558223	-1.52264718775774	0.640753741356348	0.855918148133186	1
Merged-chr3-58511834-2	chr3	58511734	58511934	+	576.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13987.0	NM_001005509	229317.0	Mm.21617	NM_001005509	ENSMUSG00000027810	Eif2a	D030048D22|D3Ertd194e	eukaryotic translation initiation factor 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-75308637-2	chr12	75308537	75308737	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_023275, exon 1 of 5)	5' UTR (NM_023275, exon 1 of 5)	324.0	NM_023275	80837.0	Mm.27467	NM_023275	ENSMUSG00000046768	Rhoj	1110005O19Rik|AW210585|Arhj|TC10L|TCL	ras homolog family member J	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19337585-2	chr7	19337485	19337685	+	718.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7486.0	NM_001127324	13870.0	Mm.280913	NM_007948	ENSMUSG00000003549	Ercc1	Ercc-1	excision repair cross-complementing rodent repair deficiency, complementation group 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-79512382-2	chr15	79512282	79512482	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4026.0	NM_134090	105785.0	Mm.298199	NM_134090	ENSMUSG00000010830	Kdelr3	AI173274	KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-66978772-2	chr9	66978672	66978872	+	729.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3288.0	NM_030717	80907.0	Mm.157882	NM_030717	ENSMUSG00000032370	Lactb	LACT-1|Lact1|Mrpl56	lactamase, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-17132433-4	chr16	17132325	17132525	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022324)	promoter-TSS (NM_022324)	-42.0	NM_022324	64136.0	Mm.30222	NM_022324	ENSMUSG00000022769	Sdf2l1	-	stromal cell-derived factor 2-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-11281014-6	chr10	11281068	11281268	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027968)	promoter-TSS (NM_027968)	-162.0	NM_027968	71865.0	Mm.276229	NM_027968	ENSMUSG00000047648	Fbxo30	1700026A16Rik|MUSA1	F-box protein 30	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-55359733-2	chr3	55359633	55359833	+	551.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357475, intron 3 of 16)	MTD|LTR|ERVL-MaLR	-101995.0	NM_001195539	13175.0	Mm.393242	NM_019978	ENSMUSG00000027797	Dclk1	1700113D08Rik|2810480F11Rik|AI836758|Click-I|Cpg16|Dcamkl1|Dcl|Dclk|mKIAA0369	doublecortin-like kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19152614-2	chr7	19152514	19152714	+	699.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_026943, exon 3 of 3)	exon (NM_026943, exon 3 of 3)	2776.0	NM_026943	107686.0	Mm.29135	NM_026943	ENSMUSG00000040824	Snrpd2	1810009A06Rik|SMD2	small nuclear ribonucleoprotein D2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-73183608-2	chr15	73183508	73183708	+	731.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_153178, intron 1 of 18)	intron (NM_153178, intron 1 of 18)	1339.0	NM_153178	239528.0	Mm.23095	NM_153178	ENSMUSG00000036698	Ago2	1110029L17Rik|2310051F07Rik|AI225898|AL022874|AW546247|Eif2c2|Gerp95|Gm10365|mKIAA4215	argonaute RISC catalytic subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129197286-2	chr2	129197186	129197386	+	868.4166869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1487.0	NM_015747	20515.0	Mm.272675	NM_015747	ENSMUSG00000027397	Slc20a1	AI607883|Glvr-1|Glvr1	solute carrier family 20, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-77733939-4	chr9	77733846	77734046	+	948.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6B|LTR|ERVK	-20589.0	NR_151778	14629.0	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-7343508-2	chr19	7343408	7343608	+	603.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-1648.0	NM_001080388	13728.0	Mm.258986	NM_007928	ENSMUSG00000024969	Mark2	EMK-1|Emk|Par-1|Par-1b	MAP/microtubule affinity regulating kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-90284554-4	chr16	90284439	90284639	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178923)	promoter-TSS (NM_178923)	-36.0	NM_178923	224432.0	Mm.439811	NM_178923	ENSMUSG00000022983	Scaf4	AA517739|Sfrs15|Sra4|Srsf15	SR-related CTD-associated factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-20928269-4	chr14	20928162	20928362	+	946.357178	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1136.0	NM_009502	22330.0	Mm.279361	NM_009502	ENSMUSG00000021823	Vcl	9430097D22|AA571387|AI462105|AW545629	vinculin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-68091976-4	chr10	68091888	68092088	+	996.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	112418.0	NM_001359319	170799.0	Mm.209844	NM_133244	ENSMUSG00000037846	Rtkn2	B130039D23Rik|Mbf|Plekhk1	rhotekin 2	protein-coding	3.14756476145018	4.15608355598971	3.42941116851113	2.5945249934716	3.91219087970352	4.75502246681416	3.00662529883515	4.04650922575027	0.883809881872692	0.131051694423635	0.566336454410263
Merged-chr2-90473353-2	chr2	90473253	90473453	+	697.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 2 of 23)	MLT1B|LTR|ERVL-MaLR	5821.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-44636978-2	chr10	44636844	44637044	+	587.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-178196.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-78265608-2	chr16	78265508	78265708	+	778.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10154.0	NR_045698	100503619.0	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-35211682-1	chr9	35211582	35211782	+	966.0	f0_c57.idr	promoter-TSS (NM_001291449)	promoter-TSS (NM_001291449)	479.0	NM_026130	67398.0	Mm.284688	NM_026130	ENSMUSG00000032042	Srpr	1300011P19Rik|D11Mgi27|Srpra	signal recognition particle receptor ('docking protein')	protein-coding	0.856410481781213	3.07850768378405	1.44988377477577	1.17804607497055	2.56910030048273	0.969736191016341	2.10364283742063	1.18506178665196	-0.261412769001388	0.831715415242107	0.998431161219273
Merged-chr10-122447498-3	chr10	122447399	122447599	+	628.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016847)	promoter-TSS (NM_016847)	-1000.0	NM_016847	54140.0	Mm.4351	NM_016847	ENSMUSG00000020123	Avpr1a	AVPR|Avpr1|V1a|V1aR	arginine vasopressin receptor 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-72870425-2	chr5	72870325	72870525	+	711.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1977.0	NM_001113460	21682.0	Mm.319581	NM_013689	ENSMUSG00000029217	Tec	-	tec protein tyrosine kinase	protein-coding	0.449238535431628	0.0275476084761149	0.323814567227741	0.0194261972664786	0.458784648045717	0.0285866832400327	0.330783457458334	0.0200413255651593	0.0414179665829699	0.984440840671361	1
Merged-chr16-75962911-2	chr16	75962811	75963011	+	928.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4B|LINE|L1	-37873.0	NR_155447	102632240.0	Mm.417237	NR_155447	ENSMUSG00000087214	Gm15555	-	predicted gene 15555	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-107671690-3	chr3	107671583	107671783	+	880.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145542, intron 6 of 16)	intron (NM_145542, intron 6 of 16)	24373.0	NM_001357113	229709.0	Mm.220328	NM_145542	ENSMUSG00000027893	Ahcyl1	1110034F20Rik|AA409031|AA414901|Ahcy-rs3|DCAL|Irbit	S-adenosylhomocysteine hydrolase-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-20033794-4	chr3	20033751	20033951	+	809.479187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080634, intron 1 of 16)	intron (NM_080634, intron 1 of 16)	1459.0	NM_001146324	12807.0	Mm.291533	NM_080634	ENSMUSG00000027615	Hps3	coa	HPS3, biogenesis of lysosomal organelles complex 2 subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-34853795-2	chr18	34853695	34853895	+	725.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7412.0	NM_007913	13653.0	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	-0.885343988398316	-0.873197811915141	-0.879568534556306	-0.464008891048743	-0.884809499207366	-0.870535133016439	-0.878945546113603	-0.458408536970068	0.0285539633070526	0.992673327504828	1
Merged-chr1-171326816-3	chr1	171326703	171326903	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2005.0	NM_001357550	21945.0	Mm.270139	NM_011615	ENSMUSG00000013973	Dedd	CASP8IP1|DEFT|Dedpro1|FLDED1|KE05	death effector domain-containing	protein-coding	1.36665819691787	1.83622825996058	2.23717267688889	2.08801559885999	1.37907365294679	0.916469957532699	0.895844597218815	0.877686037947161	-3.3081545181415	0.0148352372617976	0.144085140313314
Merged-chr1-184235788-4	chr1	184235687	184235887	+	965.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	201406.0	NM_022019	63953.0	Mm.404024	NM_022019	ENSMUSG00000039384	Dusp10	2610306G15Rik|AI158871|MKP-5|MKP5	dual specificity phosphatase 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-84803867-4	chr12	84803764	84803964	+	833.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013589, intron 16 of 34)	intron (NM_013589, intron 16 of 34)	30594.0	NM_028863	74316.0	Mm.25719	NM_028863	ENSMUSG00000021241	Isca2	0710001C05Rik|5730594E03Rik|Hbld1	iron-sulfur cluster assembly 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-45372406-2	chr13	45372291	45372491	+	603.833374	f0_balb.idr|f1_c57bl6.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	-17351.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	2.28253347840907	1.45548129896169	2.5855140043009	2.28862761449216	2.73529714714024	2.79929016456881	1.90057410235976	2.94435989925821	0.933096555241482	0.276837686042206	0.781366007374687
Merged-chr16-62832644-4	chr16	62832544	62832744	+	842.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026577, intron 1 of 9)	intron (NM_026577, intron 1 of 9)	14396.0	NM_026577	68146.0	Mm.96833	NM_026577	ENSMUSG00000022911	Arl13b	A530097K21Rik|A930014M17Rik|Arl2l1|C530009C10Rik|hnn	ADP-ribosylation factor-like 13B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-87156357-4	chr17	87156251	87156451	+	988.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38591.0	NR_046016	399626.0	Mm.396062	NR_046016		C330024C12Rik	-	RIKEN cDNA C330024C12 gene	ncRNA	5.1227459886492	3.94191626972813	4.05046521423571	5.64398716653595	5.73166489400883	5.23697635000336	4.59484229250367	5.75079614310513	0.607519981293626	0.147077270791763	0.597235930153287
Merged-chr17-87024538-2	chr17	87024438	87024638	+	856.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008838, intron 1 of 5)	intron (NM_008838, intron 1 of 5)	863.0	NM_008838	18701.0	Mm.219685	NM_008838	ENSMUSG00000024145	Pigf	-	phosphatidylinositol glycan anchor biosynthesis, class F	protein-coding	1.48878604001138	1.44262033059472	0.899849061689889	1.07088149387121	1.50173990083036	1.45354384142998	1.26369613387095	1.47829890344567	0.696193910096402	0.576152118430157	0.965286201225318
Merged-chr14-54642853-1	chr14	54642753	54642953	+	563.333313	f1_balb.idr	TTS (NR_105913)	TTS (NR_105913)	257.0	NR_105913	102466771.0		NR_105913	ENSMUSG00000106169	Mir6948	mmu-mir-6948	microRNA 6948	ncRNA	-1.50865488148137	-1.47610178681596	-1.48594611133376	-1.49403253259917	-1.35258228898051	-1.16417614753549	-1.48371757204438	-1.49258506705888	2.15710271411426	0.528357820340818	1
Merged-chr11-74661746-2	chr11	74661646	74661846	+	611.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081158, exon 10 of 26)	exon (NM_001081158, exon 10 of 26)	12251.0	NM_001081158	74148.0	Mm.214574	NM_001081158	ENSMUSG00000020741	Cluh	1300001I01Rik|Kiaa0664|mKIAA0664	clustered mitochondria (cluA/CLU1) homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-108405936-4	chr4	108405847	108406047	+	954.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024198, intron 1 of 2)	intron (NM_024198, intron 1 of 2)	766.0	NM_024198	67305.0	Mm.20164	NM_024198	ENSMUSG00000028597	Gpx7	3110050F08Rik|AI327032|GPX6	glutathione peroxidase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171380053-4	chr1	171379932	171380132	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122680, intron 1 of 7)	intron (NM_001122680, intron 1 of 7)	-8928.0	NM_001005508	226652.0	Mm.251048	NM_001005508	ENSMUSG00000048865	Arhgap30	6030405P05Rik|Gm102|mFLJ00267	Rho GTPase activating protein 30	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-43322263-4	chr1	43322146	43322346	+	927.05835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	-123505.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6338625-2	chr19	6338525	6338725	+	698.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001168489, intron 7 of 9)	intron (NM_001168489, intron 7 of 9)	-2535.0	NM_009006	26412.0	Mm.25860	NM_009006	ENSMUSG00000024948	Map4k2	AI385662|BL44|GCK|Rab8ip	mitogen-activated protein kinase kinase kinase kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-132109599-4	chr2	132109466	132109666	+	969.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355430, intron 1 of 15)	B3A|SINE|B2	35542.0	NM_001355431	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-37722042-1	chr6	37721942	37722142	+	700.5	f0_c57.idr	Intergenic	RLTR49|LTR|ERVK	-148769.0	NM_001272064	21848.0	Mm.41063	NM_145076	ENSMUSG00000029833	Trim24	A130082H20Rik|AI447469|D430004I05Rik|TIF1|TIF1-alpha|TIF1alpha|Tif1a	tripartite motif-containing 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-45024252-2	chr14	45024152	45024352	+	716.583374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36141.0	NM_008964	19217.0	Mm.4630	NM_008964	ENSMUSG00000037759	Ptger2	EP2|Ptgerep2	prostaglandin E receptor 2 (subtype EP2)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135008068-2	chr5	135007968	135008168	+	813.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1084.0	NM_001190437	68758.0	Mm.389700	NM_145215	ENSMUSG00000040532	Abhd11	1110054D16Rik|A630008N09Rik|Wbscr21	abhydrolase domain containing 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114666397-2	chr11	114666297	114666497	+	723.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2146.0	NM_023372	67671.0	Mm.238817	NM_023372	ENSMUSG00000057322	Rpl38	0610025G13Rik|Rbt|Ts|Tss	ribosomal protein L38	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-117444501-3	chr2	117444402	117444602	+	760.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-101625.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-36706281-2	chr15	36706181	36706381	+	798.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	84651.0	NM_001253807	22631.0	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-136547239-1	chr6	136547139	136547339	+	738.0	f0_balb.idr	intron (NM_019426, intron 1 of 14)	intron (NM_019426, intron 1 of 14)	28388.0	NM_019426	54343.0	Mm.173271	NM_019426	ENSMUSG00000030213	Atf7ip	2610204M12Rik|AM|Mcaf1	activating transcription factor 7 interacting protein	protein-coding	1.94591381562703	1.98316895061423	1.91290733095607	1.06725382895213	1.54120093419581	1.99865861793556	1.92863492851051	1.07014605790494	-0.278180989966076	0.811077831602448	0.998431161219273
Merged-chr16-76370822-4	chr16	76370723	76370923	+	848.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173440, intron 1 of 3)	intron (NM_173440, intron 1 of 3)	2226.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-57607231-3	chr16	57607144	57607344	+	706.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025599)	promoter-TSS (NM_025599)	-377.0	NM_025599	66497.0	Mm.425976	NM_025599	ENSMUSG00000022748	Cmss1	1110001A06Rik|2610528E23Rik|4930572F24Rik|AV099812|AV122629	cms small ribosomal subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-116974388-4	chr8	116974366	116974566	+	948.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027103, intron 1 of 2)	intron (NM_027103, intron 1 of 2)	4187.0	NM_001357254	69528.0	Mm.272846	NM_027103	ENSMUSG00000031847	1700030J22Rik	-	RIKEN cDNA 1700030J22 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26235149-2	chr17	26235049	26235249	+	583.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001206335, intron 1 of 12)	intron (NM_001206335, intron 1 of 12)	9093.0	NM_207217	106581.0	Mm.28844	NM_207217	ENSMUSG00000024187	Fam234a	Itfg3	family with sequence similarity 234, member A	protein-coding	0.647031386823119	1.61937725097755	1.93930036107495	1.87062296673898	0.855771482143688	0.7055794050534	0.930965270059716	0.673077046464651	-3.58767316243222	0.0211647039807762	0.186168708476065
Merged-chr7-118797786-3	chr7	118797677	118797877	+	865.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027815, intron 19 of 30)	intron (NM_027815, intron 19 of 30)	57506.0	NM_027815	71517.0	Mm.213298	NM_027815	ENSMUSG00000030982	9030624J02Rik	2610029J22Rik	RIKEN cDNA 9030624J02 gene	protein-coding	0.0486341019862835	0.391830019697347	-0.192246329132905	-0.195422511106241	-0.063331722535307	-0.00184237023189216	-0.191336316544822	-0.038824422245381	-1.06159726793339	0.62054120859941	1
Merged-chr7-6287465-2	chr7	6287365	6287565	+	867.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001024928, intron 1 of 4)	intron (NM_001024928, intron 1 of 4)	885.0	NM_001024928	384763.0	Mm.276279	NM_001024928	ENSMUSG00000054893	Zfp667	A830025F02Rik|Mip1|ZNF667	zinc finger protein 667	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-11353000-3	chr17	11352888	11353088	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001317726, intron 4 of 6)	MLTR25A|LTR|ERVK	512629.0	NM_016694	50873.0	Mm.311110	NM_016694	ENSMUSG00000023826	Park2	PRKN	Parkinson disease (autosomal recessive, juvenile) 2, parkin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-29004010-2	chr17	29003910	29004110	+	898.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357173, intron 1 of 13)	intron (NM_001357173, intron 1 of 13)	3985.0	NM_134115	106504.0	Mm.439986	NM_134115	ENSMUSG00000024006	Stk38	5830476G13Rik|9530097A09Rik|AA617404|Ndr1	serine/threonine kinase 38	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101910412-2	chr11	101910312	101910512	+	999.583374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16058.0	NM_010791	17285.0	Mm.3404	NM_010791	ENSMUSG00000001493	Meox1	AI385561|D330041M02Rik|Mox-1|Mox1	mesenchyme homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-101699193-2	chr13	101699093	101699293	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077495, intron 7 of 15)	intron (NM_001077495, intron 7 of 15)	-6563.0	NM_001024955	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-100780137-2	chr15	100780037	100780237	+	576.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021530, intron 2 of 24)	intron (NM_021530, intron 2 of 24)	-1117.0	NM_001347102	59033.0	Mm.209856	NM_021530	ENSMUSG00000023032	Slc4a8	AW493845|C230026C11|NDCBE|kNBC-3	solute carrier family 4 (anion exchanger), member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-99162037-3	chr10	99161909	99162109	+	673.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027740, intron 9 of 11)	intron (NM_027740, intron 9 of 11)	53874.0	NM_015737	14426.0	Mm.314	NM_015737	ENSMUSG00000090035	Galnt4	AV011803	polypeptide N-acetylgalactosaminyltransferase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-36721752-2	chr16	36721652	36721852	+	976.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285788, intron 6 of 7)	intron (NM_001285788, intron 6 of 7)	27774.0	NM_001285791	106347.0	Mm.17807	NM_134109	ENSMUSG00000022900	Ildr1	AU041483|AU044638	immunoglobulin-like domain containing receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-30591068-2	chr17	30590968	30591168	+	996.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14781.0	NM_027060	224671.0	Mm.41220	NM_027060	ENSMUSG00000062202	Btbd9	1700023F20Rik|4930402L05|AI464421	BTB (POZ) domain containing 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-44919831-4	chr12	44919728	44919928	+	867.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144552, intron 2 of 5)	intron (NM_144552, intron 2 of 5)	154655.0	NM_144552	217517.0	Mm.285400	NM_144552	ENSMUSG00000046314	Stxbp6	BC024598|C85317	syntaxin binding protein 6 (amisyn)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-37441791-1	chr6	37441691	37441891	+	1000.0	f0_balb.idr	exon (NM_178661, exon 1 of 12)	exon (NM_178661, exon 1 of 12)	357.0	NM_178661	208647.0	Mm.169929	NM_178661	ENSMUSG00000038648	Creb3l2	BBF2H7|C530025K05Rik|SCIRR69	cAMP responsive element binding protein 3-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-87960883-2	chr10	87960783	87960983	+	663.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5788.0	NR_000040	22172.0	Mm.391420	NR_000040		Tyms-ps	-	thymidylate synthase, pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-3598015-2	chr7	3597915	3598115	+	668.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER21C|LTR|ERVL	18142.0	NM_175632	232790.0	Mm.358882	NM_175632	ENSMUSG00000054594	Oscar	mOSCAR|mOSCAR-M1|mOSCAR-M2|mOSCAR-M3	osteoclast associated receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-34502770-4	chr14	34502693	34502893	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009758)	promoter-TSS (NM_009758)	-247.0	NM_009758	12166.0	Mm.237825	NM_009758	ENSMUSG00000021796	Bmpr1a	1110037I22Rik|ALK-3|ALK3|AU045487|BMPR-1A|BMPR-IA|Bmpr|SKR5	bone morphogenetic protein receptor, type 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-102955705-3	chr4	102955601	102955801	+	909.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285859, intron 17 of 23)	intron (NM_001285859, intron 17 of 23)	-30678.0	NM_001163767	67344.0	Mm.111346	NM_026100	ENSMUSG00000028523	Tctex1d1	1700055O19Rik	Tctex1 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-90693834-1	chr3	90693734	90693934	+	611.0	f1_balb.idr	intron (NM_009114, intron 2 of 2)	intron (NM_009114, intron 2 of 2)	1887.0	NM_009114	20202.0	Mm.2128	NM_009114	ENSMUSG00000056071	S100a9	60B8Ag|AW546964|BEE22|Cagb|GAGB|L1Ag|MRP14|p14	S100 calcium binding protein A9 (calgranulin B)	protein-coding	-1.33793447301127	-1.30826030895896	-1.31828845321677	-1.32652586948969	-0.950077789383471	-1.30608716826488	-1.15822981092724	-1.32505137591525	2.29714043412452	0.496446034091415	1
Merged-chr13-91362134-3	chr13	91362047	91362247	+	810.43335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25938.0	NR_045161	320297.0	Mm.375866	NR_045161	ENSMUSG00000097182	A830009L08Rik	-	RIKEN cDNA A830009L08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-121236772-1	chr11	121236672	121236872	+	1000.0	f0_c57.idr	promoter-TSS (NM_026272)	promoter-TSS (NM_026272)	-464.0	NM_026272	67608.0	Mm.291832	NM_026272	ENSMUSG00000000056	Narf	4430402O11Rik	nuclear prelamin A recognition factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-32348314-3	chr11	32348216	32348416	+	912.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177364, intron 1 of 12)	intron (NM_177364, intron 1 of 12)	505.0	NM_177364	268396.0	Mm.227616	NM_177364	ENSMUSG00000040711	Sh3pxd2b	G431001E03Rik|TSK4|fad49	SH3 and PX domains 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-64049885-4	chr7	64049768	64049968	+	939.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-103967.0	NM_001039104	17364.0	Mm.38875	NM_018752	ENSMUSG00000030523	Trpm1	4732499L03Rik|AI606771|Ltrpc1|Mlsn1	transient receptor potential cation channel, subfamily M, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-120789177-2	chr6	120789077	120789277	+	664.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081048, intron 5 of 9)	B2_Mm2|SINE|B2	15409.0	NM_001081048	71803.0	Mm.425340	NM_001081048	ENSMUSG00000004902	Slc25a18	1500015I14Rik|AW125787	solute carrier family 25 (mitochondrial carrier), member 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53074058-2	chr4	53073958	53074158	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 23 of 49)	intron (NM_013454, intron 23 of 49)	62178.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-45416104-4	chr8	45415991	45416191	+	807.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR30D2_MM|LTR|ERV1	-5472.0	NM_126166	142980.0	Mm.33874	NM_126166	ENSMUSG00000031639	Tlr3	AI957183	toll-like receptor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-74432369-2	chr17	74432269	74432469	+	964.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033367, intron 8 of 8)	B3|SINE|B2	26739.0	NM_001033367	268973.0	Mm.311884	NM_001033367	ENSMUSG00000039193	Nlrc4	9530011P19Rik|CLAN|CLAN1|CLANA|CLANB|CLANC|CLAND|Card12|IPAF	NLR family, CARD domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-18678602-2	chr16	18678502	18678702	+	705.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48664.0	NM_213614	18951.0	Mm.20365	NM_213614	ENSMUSG00000072214	Sept5	Cdcrel-1|Cdcrel1|Pnutl1	septin 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118234127-2	chr11	118234027	118234227	+	802.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	14465.0	NM_001112699	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-73424107-2	chr13	73424007	73424207	+	594.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43276.0	NM_145376	210992.0	Mm.284649	NM_145376	ENSMUSG00000021608	Lpcat1	2900035H07Rik|Aytl2|BB137372|BC005662|C87117|LPCAT|rd11	lysophosphatidylcholine acyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4989198-4	chr19	4989074	4989274	+	847.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153553, intron 1 of 7)	intron (NM_153553, intron 1 of 7)	797.0	NM_153553	225872.0	Mm.287867	NM_153553	ENSMUSG00000045903	Npas4	LE-PAS|Nxf	neuronal PAS domain protein 4	protein-coding	1.22224287621101	0.782073757301366	0.572890582157177	1.00901896767785	1.23548087470057	0.583782538012627	0.574855660008273	1.12759063069467	0.00444695109825343	0.997809224247722	1
Merged-chr4-131904733-2	chr4	131904633	131904833	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_102393, intron 4 of 4)	RSINE1|SINE|B4	15296.0	NR_102394	545681.0	Mm.2478	NR_102393	ENSMUSG00000085667	Gm12992	-	predicted gene 12992	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-85194696-4	chr10	85194608	85194808	+	988.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4A|LINE|L1	-9654.0	NM_007771	12952.0	Mm.26237	NM_007771	ENSMUSG00000020038	Cry1	AU020726|AU021000|Phll1	cryptochrome 1 (photolyase-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-77438761-3	chr1	77438659	77438859	+	892.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007936, intron 4 of 17)	intron (NM_007936, intron 4 of 17)	58009.0	NR_105770	102465180.0		NR_105770	ENSMUSG00000099141	Mir6352	Gm27481|mmu-mir-6352	microRNA 6352	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-36136875-2	chr17	36136753	36136953	+	589.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-7428.0	NM_001177467	630294.0	Mm.484916	NM_001177467	ENSMUSG00000092243	Gm7030	EG630294|H2-t9	predicted gene 7030	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-77358876-4	chr15	77358830	77359030	+	973.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40180.0	NM_029419	75761.0	Mm.232636	NM_029419	ENSMUSG00000010601	Apol7a	9130022K13Rik|Apol3	apolipoprotein L 7a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-68317160-3	chr15	68317052	68317252	+	755.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20358.0	NR_029534	387226.0		NR_029534	ENSMUSG00000065476	Mir30b	Mirn30b|mir-30b|mmu-mir-30b	microRNA 30b	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-24600985-4	chr12	24600811	24601011	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145890, intron 6 of 13)	intron (NM_145890, intron 6 of 13)	20192.0	NM_145890	195733.0	Mm.263068	NM_145890	ENSMUSG00000020656	Grhl1	LBP-32|MGR|Tcfcp2l2	grainyhead like transcription factor 1	protein-coding	3.642559896312	3.92421090983762	4.64832262694229	3.76360512744847	3.60559917753795	4.40744364446022	3.89892563851779	4.09779538719749	-0.039440763657207	0.933611163936729	0.998431161219273
Merged-chr18-50097571-1	chr18	50097471	50097671	+	552.0	f1_c57bl6.idr	Intergenic	Intergenic	-30630.0	NM_008292	15488.0	Mm.277857	NM_008292	ENSMUSG00000024507	Hsd17b4	17-beta-HSD|17[b]-HSD|DBP|MFE-2|MFP2|MPF-2|Mfp-2|perMFE-2	hydroxysteroid (17-beta) dehydrogenase 4	protein-coding	0.322156238454627	2.15906879749937	0.11354366516311	0.0996011210398002	0.0789764317259786	0.134695582079558	1.0015855700351	0.102074049248068	-2.20239935761297	0.506723696664632	0.942877002571689
Merged-chr2-150885396-2	chr2	150885296	150885496	+	553.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_151505, intron 1 of 12)	RMER1A|Other|Other	19335.0	NM_024465	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-25282113-4	chr15	25282008	25282208	+	930.508301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F2|LTR|ERVL-MaLR	131656.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-54039549-3	chr6	54039465	54039665	+	969.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163640)	promoter-TSS (NM_001163640)	-367.0	NM_001163640	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55685375-2	chr14	55685275	55685475	+	636.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3558.0	NM_145705	28113.0	Mm.29346	NM_145705	ENSMUSG00000007589	Tinf2	AW552114|D14Wsu146e|Tin2	Terf1 (TRF1)-interacting nuclear factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-17393489-1	chr19	17393389	17393589	+	622.0	f0_balb.idr	promoter-TSS (NM_019437)	promoter-TSS (NM_019437)	-554.0	NM_019437	54391.0	Mm.7013	NM_019437	ENSMUSG00000024712	Rfk	0610038L10Rik|AF031381|KOI-4	riboflavin kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134403107-2	chr6	134403007	134403207	+	801.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_153848, exon 1 of 9)	non-coding (NR_153848, exon 1 of 9)	308.0	NR_153848	74064.0		NR_153848		4933406J09Rik	Gm44293	RIKEN cDNA 4933406J09 gene	ncRNA	0.700275157038159	0.825008055317431	2.99746141296375	0.756015808137582	0.996642122137372	0.833223904226435	3.18809837111175	2.22739707473759	0.757221541928577	0.780019824008673	0.998431161219273
Merged-chr1-85114877-2	chr1	85114770	85114970	+	642.25	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-5017.0	NM_213615	381287.0	Mm.487565	NM_213615	ENSMUSG00000089844	A530032D15Rik	Gm1888	RIKEN cDNA A530032D15Rik gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191278517-4	chr1	191278379	191278579	+	798.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39639.0	NM_025424	66208.0	Mm.46444	NM_025424	ENSMUSG00000037499	Nenf	1110060M21Rik|SCIRP10|Spuf	neuron derived neurotrophic factor	protein-coding	2.96506416242339	3.11047019575846	3.62145679456687	3.1413279180249	4.11501969729022	3.26633464898626	4.51532403838815	4.71589699504008	1.47953575112971	0.00517173308471518	0.0685550419361476
Merged-chr11-115099685-3	chr11	115099590	115099790	+	897.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163753, intron 1 of 8)	intron (NM_001163753, intron 1 of 8)	8259.0	NM_001163753	58222.0	Mm.143789	NM_021411	ENSMUSG00000020732	Rab37	B230331O03Rik|B230354I04Rik	RAB37, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-67033426-4	chr1	67033296	67033496	+	902.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001190984, intron 3 of 9)	intron (NM_001190984, intron 3 of 9)	5438.0	NM_001190984	14768.0	Mm.20522	NM_021295	ENSMUSG00000026000	Lancl1	AW124738|Gpr69|Gpr69a|p40	LanC (bacterial lantibiotic synthetase component C)-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123933749-1	chr5	123933649	123933849	+	553.0	f1_c57bl6.idr	intron (NM_001134767, intron 1 of 12)	intron (NM_001134767, intron 1 of 12)	3060.0	NM_001134767	208908.0	Mm.243679	NM_001134767	ENSMUSG00000061882	Ccdc62	AI661708|G1-485-3|Gm150|repro29	coiled-coil domain containing 62	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27908192-3	chr17	27908097	27908297	+	626.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_026836, exon 2 of 6)	5' UTR (NM_026836, exon 2 of 6)	1045.0	NM_026836	68776.0	Mm.267998	NM_026836	ENSMUSG00000024218	Taf11	1110038O14Rik|AI115401|AL024207|AW552398|PRO214|TAF2I|TAFII28	TATA-box binding protein associated factor 11	protein-coding	1.59226755687982	1.0476505085967	1.02844541461381	1.99619254506905	1.48321322956587	1.49538332208336	1.86838083356574	2.2468822204609	0.993608418368646	0.403763346726599	0.888897182593852
Merged-chr16-64759937-2	chr16	64759837	64760037	+	681.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	11002.0	NM_026273	67609.0	Mm.212157	NM_026273	ENSMUSG00000059920	4930453N24Rik	AI649104|din	RIKEN cDNA 4930453N24 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3650572-5	chr4	3650468	3650668	+	944.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5938.0	NR_040643	70143.0	Mm.417835	NR_040643	ENSMUSG00000085394	2210414B05Rik	-	RIKEN cDNA 2210414B05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-103335988-2	chr12	103335888	103336088	+	780.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023049, intron 3 of 9)	intron (NM_023049, intron 3 of 9)	20013.0	NM_023049	65256.0	Mm.27159	NM_023049	ENSMUSG00000021200	Asb2	1110008E15Rik	ankyrin repeat and SOCS box-containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91935127-2	chr2	91935027	91935227	+	611.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166597, intron 26 of 31)	intron (NM_001166597, intron 26 of 31)	-2830.0	NM_010784	17242.0	Mm.906	NM_010784	ENSMUSG00000027239	Mdk	MK|Mek	midkine	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-64624119-2	chr17	64624019	64624219	+	584.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008549, intron 1 of 21)	intron (NM_008549, intron 1 of 21)	22470.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-127213701-3	chr1	127213642	127213842	+	950.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145128, intron 1 of 17)	intron (NM_145128, intron 1 of 17)	8756.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46394028-2	chr19	46393928	46394128	+	565.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016860, intron 1 of 10)	intron (NM_016860, intron 1 of 10)	1707.0	NM_016860	54130.0	Mm.3118	NM_016860	ENSMUSG00000025228	Actr1a	Arp1|alpha-Arp1	ARP1 actin-related protein 1A, centractin alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152902872-4	chr1	152902764	152902964	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359257)	promoter-TSS (NM_001359257)	-218.0	NM_001005507	226517.0	Mm.270775	NM_001005507	ENSMUSG00000042772	Smg7	9430023P16Rik|mKIAA0250	Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-130717513-4	chr1	130717407	130717607	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_178691, exon 1 of 2)	exon (NM_178691, exon 1 of 2)	180.0	NM_178691	226418.0	Mm.106553	NM_178691	ENSMUSG00000046404	Yod1	6330564D18Rik|9930028C20Rik|Hshin7	YOD1 deubiquitinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-136142884-4	chr1	136142772	136142972	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039472, intron 1 of 34)	MIR|SINE|MIR	11482.0	NR_153829	16565.0	Mm.276135	NM_019962	ENSMUSG00000041642	Kif21b	2610511N21Rik|mKIAA0449	kinesin family member 21B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88406368-2	chr3	88406268	88406468	+	699.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025928, intron 1 of 4)	intron (NM_025928, intron 1 of 4)	4029.0	NM_001310605	67037.0	Mm.36715	NM_025928	ENSMUSG00000028066	Pmf1	2600009M07Rik|AL033286|AW060657	polyamine-modulated factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-142610812-4	chr2	142610722	142610922	+	803.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	290642.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-94603659-2	chr15	94603559	94603759	+	817.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13835.0	NM_008971	19230.0	Mm.490250	NM_008971	ENSMUSG00000022451	Twf1	A6|Ptk9|twinfilin	twinfilin actin binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-93997182-4	chr13	93997105	93997305	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60591.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94225573-2	chr10	94225474	94225674	+	933.125	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	26565.0	NM_025551	66414.0	Mm.27886	NM_025551	ENSMUSG00000020022	Ndufa12	2410011G03Rik|AW112974	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12	protein-coding	2.30064930434607	1.98269918324081	1.58194643348107	3.67665822938463	5.27526131142464	4.67369966793538	3.38995952172054	4.55910798609579	2.81654845094085	0.0071105176235502	0.0857694273934537
Merged-chr9-64811148-4	chr9	64811066	64811266	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162917, intron 1 of 34)	CpG	155.0	NM_001162917	102442.0	Mm.222473	NM_176935	ENSMUSG00000053641	Dennd4a	AI115600|AI851943|F730015K02Rik	DENN/MADD domain containing 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-73029276-2	chr2	73029176	73029376	+	604.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-48830.0	NM_001018042	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-100304848-4	chr15	100304817	100305017	+	979.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027334)	promoter-TSS (NM_027334)	100.0	NM_027334	70152.0	Mm.488086	NM_027334	ENSMUSG00000054619	Mettl7a1	2210414H16Rik|3300001H21Rik|Aam-B|Mettl7a|UbiE1	methyltransferase like 7A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-78983133-4	chr11	78983007	78983207	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010708, intron 1 of 10)	intron (NM_010708, intron 1 of 10)	1817.0	NM_001159301	16859.0	Mm.341434	NM_010708	ENSMUSG00000001123	Lgals9	AA407335|AI194909|AI265545|LGALS35|Lgals5|gal-9|galectin-9	lectin, galactose binding, soluble 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152547167-2	chr1	152547067	152547267	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 8 of 17)	MTEb|LTR|ERVL-MaLR	78050.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-121446025-4	chr10	121445925	121446125	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138956, intron 1 of 4)	intron (NM_138956, intron 1 of 4)	30225.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	1.07596021556378	0.947872826875058	1.91930063416288	1.55585285138813	1.76986777092279	0.951481229232813	1.61764429052073	1.56438152534129	0.239004649421751	0.851583753829751	0.998431161219273
Merged-chr7-44467975-4	chr7	44467874	44468074	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001205070)	promoter-TSS (NM_001205070)	-6.0	NM_001360604	66124.0	Mm.358691	NM_025368	ENSMUSG00000038695	Josd2	1110007C05Rik	Josephin domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-12951469-1	chr7	12951369	12951569	+	937.0	f1_c57bl6.idr	Intergenic	Intergenic	-14369.0	NM_001362140	243834.0	Mm.133086	NM_178732	ENSMUSG00000004500	Zfp324	A930002M05|D430030K24Rik|ZF5128	zinc finger protein 324	protein-coding	0.282969355914086	0.345452204467592	0.608986179644473	2.27034818142043	0.287152083034174	0.349726362262871	0.330342599379754	1.69607177016962	-1.05716018438761	0.747290298695242	0.998431161219273
Merged-chr9-16319182-4	chr9	16319080	16319280	+	792.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080814, intron 1 of 24)	intron (NM_001080814, intron 1 of 24)	59051.0	NM_001080814	270120.0	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT atypical cadherin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-44190294-4	chr16	44190213	44190413	+	879.716675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029889, intron 1 of 7)	intron (NM_001029889, intron 1 of 7)	16916.0	NM_001029889	207806.0	Mm.310566	NM_001029889	ENSMUSG00000068284	Usf3	5530400K22Rik|Gm1779|Gm608|mKIAA2018	upstream transcription factor family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-84935881-4	chr1	84935773	84935973	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027921)	promoter-TSS (NM_027921)	-790.0	NM_027921	71781.0	Mm.158754	NM_027921	ENSMUSG00000026220	Slc16a14	1110004H10Rik	solute carrier family 16 (monocarboxylic acid transporters), member 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-146792347-4	chr5	146792263	146792463	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011669, intron 1 of 8)	intron (NM_011669, intron 1 of 8)	2593.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	3.67949583429523	2.7636684876316	3.29688401749439	4.37724028070015	3.81657585219643	3.6304020225595	2.50795178940675	3.99771010519669	-0.101693540440912	0.866859610389231	0.998431161219273
Merged-chr2-120093402-2	chr2	120093302	120093502	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133838, intron 5 of 5)	B4A|SINE|B4	59969.0	NM_145378	211429.0	Mm.41467	NM_145378	ENSMUSG00000098488	Pla2g4b	A030011C02Rik|Gm1013|cPLA2-beta	phospholipase A2, group IVB (cytosolic)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36718012-2	chr18	36717912	36718112	+	676.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	8803.0	NM_009841	12475.0	Mm.3460	NM_009841	ENSMUSG00000051439	Cd14	-	CD14 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123719525-2	chr5	123719425	123719625	+	792.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_027494, exon 2 of 14)	exon (NM_027494, exon 2 of 14)	1519.0	NM_027494	70650.0	Mm.279427	NM_027494	ENSMUSG00000029427	Zcchc8	5730565F05Rik	zinc finger, CCHC domain containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-147184340-2	chr2	147184259	147184459	+	843.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_010919, exon 2 of 2)	exon (NM_010919, exon 2 of 2)	276.0	NR_030769	100313531.0	Mm.405189	NR_030769	ENSMUSG00000086509	Nkx2-2os	Gm14112|Nkx2-2as|Nkx2.2AS	NK2 homeobox 2, opposite strand	ncRNA	-1.5061220274826	-1.47360709383584	-1.48343987814663	-1.49151681994238	-1.50383953926072	-1.47147628845725	-1.0170701920923	-1.49007105122263	2.15652851593596	0.535359572134045	1
Merged-chr18-34777542-6	chr18	34777471	34777671	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081256, intron 1 of 23)	CpG	563.0	NM_001081256	277250.0	Mm.277906	NM_029518	ENSMUSG00000038773	Kdm3b	5830462I21Rik|JHDM2B|Jmjd1b|mKIAA1082	KDM3B lysine (K)-specific demethylase 3B	protein-coding	3.86655989236139	3.30659876165621	3.55672428629516	3.60462368634754	3.63966253661113	3.33089622621381	3.58360601077931	3.01219533574747	-0.290579186824215	0.584785153916521	0.967268722441911
Merged-chr2-32915842-2	chr2	32915742	32915942	+	645.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146119, intron 5 of 13)	intron (NM_146119, intron 5 of 13)	39708.0	NM_146119	227737.0	Mm.301646	NM_146119	ENSMUSG00000026796	Fam129b	9130404D14Rik	family with sequence similarity 129, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-126934238-4	chr2	126934122	126934322	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023220)	promoter-TSS (NM_023220)	-987.0	NM_023220	66552.0	Mm.269928	NM_023220	ENSMUSG00000027366	Sppl2a	2010106G01Rik|C130089K23Rik	signal peptide peptidase like 2A	protein-coding	6.10381859219025	5.77602159453839	5.86064856186469	6.06552785877124	6.35526364061685	5.86578889759655	6.32710816795898	5.91991677445831	0.194004931828433	0.406950026792734	0.891750620279918
Merged-chr11-32217094-4	chr11	32217022	32217222	+	771.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010117, intron 1 of 17)	intron (NM_010117, intron 1 of 17)	5171.0	NM_010117	13650.0	Mm.11545	NM_010117	ENSMUSG00000020282	Rhbdf1	C16ORF8|Dist|Dist1|Egfr-rs|mKIAA4242	rhomboid 5 homolog 1	protein-coding	4.23324066922783	4.00041259892818	3.8726319255656	3.82984291309315	2.61865049152728	3.73607401327841	3.12591066160688	3.13596376668164	-1.19114796167619	0.0240472596225851	0.203535542265229
Merged-chr12-35046295-5	chr12	35046163	35046363	+	644.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001014973)	promoter-TSS (NM_001014973)	-926.0	NM_001014973	217463.0	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	0.0553450883849292	-0.269335930195756	0.020119716051123	-0.275545999475285	-0.0368495796886245	-0.268539512144057	0.0268012418131924	-0.275076570209997	-0.242562217087111	0.916981316490256	1
Merged-chr14-33247324-3	chr14	33247228	33247428	+	672.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153800, intron 2 of 10)	intron (NM_153800, intron 2 of 10)	30505.0	NM_153800	239027.0	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-173107515-2	chr2	173107415	173107615	+	827.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355185, intron 7 of 10)	intron (NM_001355185, intron 7 of 10)	12010.0	NM_001081387	664799.0	Mm.389396	NM_001081387	ENSMUSG00000070495	Ctcfl	Boris	CCCTC-binding factor (zinc finger protein)-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-155611507-3	chr4	155611414	155611614	+	657.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177186, intron 3 of 8)	intron (NM_177186, intron 3 of 8)	10098.0	NM_177186	320541.0	Mm.306018	NM_177186	ENSMUSG00000042202	Slc35e2	A530082C11Rik|AI957035	solute carrier family 35, member E2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55479011-7	chr14	55478921	55479121	+	948.257141	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_030686, exon 1 of 5)	exon (NM_030686, exon 1 of 5)	263.0	NM_030686	28200.0	Mm.27427	NM_030686	ENSMUSG00000022210	Dhrs4	AI043103|AI790593|CR|D14Ucla2|NDRD|PHCR|PSCD|RRD|mouNRDR	dehydrogenase/reductase (SDR family) member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-83487830-4	chr12	83487727	83487927	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001267626)	promoter-TSS (NM_001267626)	-91.0	NM_058212	70127.0	Mm.151308	NM_058212	ENSMUSG00000021221	Dpf3	2810403B03Rik|6530402L11Rik|BAF45C|C78788|CERD4|cer-d4	D4, zinc and double PHD fingers, family 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-52113660-2	chr5	52113560	52113760	+	763.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	22357.0	NR_105845	102466648.0		NR_105845	ENSMUSG00000098726	Mir6417	Gm27334|mmu-mir-6417	microRNA 6417	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-164068466-2	chr2	164068366	164068566	+	740.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291155, intron 1 of 6)	intron (NM_001291155, intron 1 of 6)	2636.0	NM_025996	67145.0	Mm.23173	NM_025996	ENSMUSG00000018322	Tomm34	2610100K07Rik|TOM34	translocase of outer mitochondrial membrane 34	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-3976435-3	chr10	3976337	3976537	+	951.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170785, intron 1 of 27)	ORR1E|LTR|ERVL-MaLR	3362.0	NM_172308	270685.0	Mm.184752	NM_172308	ENSMUSG00000040675	Mthfd1l	2410004L15Rik|AI647056|Fthfsdc1	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-105126402-4	chr11	105126300	105126500	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172567)	promoter-TSS (NM_172567)	-25.0	NM_172567	52686.0	Mm.270091	NM_172567	ENSMUSG00000020691	Mettl2	2810438F06Rik|AW493404|C130031G21Rik|D11Ertd768e|METL|PSENIP1	methyltransferase like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-9879693-4	chr2	9879556	9879756	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1056.0	NM_001355112	14462.0	Mm.313866	NM_008091	ENSMUSG00000015619	Gata3	Gata-3|jal	GATA binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91869806-4	chr16	91869720	91869920	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010587, intron 28 of 38)	intron (NM_010587, intron 28 of 38)	61810.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-126753607-4	chr4	126753577	126753777	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011986)	promoter-TSS (NM_011986)	88.0	NM_001355412	26562.0	Mm.206206	NM_011986	ENSMUSG00000028833	Ncdn	AU042419|MMS10-AE|Ms10ae|mKIAA0607|norbin	neurochondrin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-42306557-4	chr9	42306463	42306663	+	979.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42263.0	NM_172769	235293.0	Mm.32700	NM_172769	ENSMUSG00000032018	Sc5d	A830037K02|A830073K23Rik|Sc5dl	sterol-C5-desaturase	protein-coding	1.91429037352165	2.57555050809284	2.39733298352205	1.16617779905977	1.52691366683442	2.17433478815903	1.44342052322657	2.14435463613065	-0.654961180189095	0.530211313912286	0.950119915711771
Merged-chr1-120121675-2	chr1	120121575	120121775	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007830)	promoter-TSS (NM_007830)	488.0	NM_001172074	73103.0	Mm.271602	NM_028439	ENSMUSG00000026388	3110009E18Rik	-	RIKEN cDNA 3110009E18 gene	protein-coding	2.71003676901002	3.2105866251903	2.71808753225413	2.64447124136967	2.90116583763389	2.40369829200262	3.28330796837222	2.86544614391049	0.12692094230506	0.851996150481131	0.998431161219273
Merged-chr7-16229210-3	chr7	16229116	16229316	+	798.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7184.0	NM_027883	71723.0	Mm.75259	NM_027883	ENSMUSG00000006019	Dhx34	1200013B07Rik|1810012L18Rik|Ddx34|mKIAA0134	DEAH (Asp-Glu-Ala-His) box polypeptide 34	protein-coding	3.04198857320933	2.66611754481043	3.51993763179543	3.9386797891388	1.65404732410731	1.57902299590615	2.96366182443489	3.37300727628861	-1.25360465440279	0.115404757273133	0.532275606520906
Merged-chr10-30678285-4	chr10	30678176	30678376	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358842, intron 9 of 14)	intron (NM_001358842, intron 9 of 14)	-22409.0	NM_001111267	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-109463325-2	chr8	109463225	109463425	+	612.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30702.0	NM_019938	56523.0	Mm.42166	NM_019938	ENSMUSG00000031727	Pmfbp1	1700016D22Rik|F77|Stap	polyamine modulated factor 1 binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-135602464-4	chr7	135602343	135602543	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316680, intron 2 of 20)	intron (NM_001316680, intron 2 of 20)	-3385.0	NM_001316679	19267.0	Mm.945	NM_011212	ENSMUSG00000041836	Ptpre	PTPe|PTPepsilon|RPTPepsilon	protein tyrosine phosphatase, receptor type, E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-87624147-1	chr15	87624047	87624247	+	808.0	f0_balb.idr	intron (NM_001252310, intron 1 of 3)	CpG	-1083.0	NM_134096	106014.0	Mm.244319	NM_134096	ENSMUSG00000054863	Fam19a5	TAFA5|Tafa-5|Tara-5	family with sequence similarity 19, member A5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-78264758-3	chr16	78264670	78264870	+	937.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-9316.0	NR_045698	100503619.0	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-21407836-1	chr19	21407736	21407936	+	753.0	f0_balb.idr	intron (NM_010266, intron 10 of 13)	MTD|LTR|ERVL-MaLR	64825.0	NM_010266	14544.0	Mm.45054	NM_010266	ENSMUSG00000058624	Gda	AU015411|AW047581|GAH	guanine deaminase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-17722774-4	chr16	17722618	17722818	+	987.4285890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285886, intron 1 of 16)	CpG	182.0	NM_001285886	94112.0	Mm.208970	NM_033609	ENSMUSG00000012114	Med15	A230074L19Rik|AW536074|Pcqap|mPcqap	mediator complex subunit 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-1380-1	chr4	1280	1480	+	1000.0	f1_c57bl6.idr	Intergenic	Intergenic	-3170703.0	NM_001167534	100312470.0	Mm.480297	NM_001167534	ENSMUSG00000115072	Vmn1r2	Gm11776	vomeronasal 1 receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-140959349-3	chr7	140959252	140959452	+	794.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3391.0	NM_030694	80876.0	Mm.379266	NM_030694	ENSMUSG00000060591	Ifitm2	DSPA2c|Ifitm3l|fragilis3|mil-3	interferon induced transmembrane protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-109479740-1	chr14	109479640	109479840	+	548.0	f1_c57bl6.idr	Intergenic	L1_Mur2|LINE|L1	-565501.0	NM_199065	76965.0	Mm.257268	NM_199065	ENSMUSG00000075478	Slitrk1	3200001I04Rik	SLIT and NTRK-like family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-100631675-4	chr15	100631586	100631786	+	887.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033872, intron 2 of 3)	intron (NM_001033872, intron 2 of 3)	3873.0	NM_001285414	207818.0	Mm.26282	NM_174992	ENSMUSG00000053559	Smagp	-	small cell adhesion glycoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-97932373-4	chr3	97932272	97932472	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033779, intron 1 of 1)	intron (NM_001033779, intron 1 of 1)	2199.0	NM_001033779	433632.0	Mm.212421	NM_001033779		Gm5544	EG433632	predicted gene 5544	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-100006040-4	chr12	100005937	100006137	+	924.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164426, intron 2 of 2)	Charlie2b|DNA|hAT-Charlie	41538.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-6979312-2	chr1	6979212	6979412	+	666.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-109608.0	NM_183028	319263.0	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-3297414-2	chr7	3297314	3297514	+	777.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_016969, exon 3 of 3)	exon (NM_016969, exon 3 of 3)	4386.0	NM_001093766	50918.0	Mm.29874	NM_016969	ENSMUSG00000068566	Myadm	D7Wsu62e	myeloid-associated differentiation marker	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52572126-4	chr13	52571992	52572192	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_046069, intron 1 of 3)	intron (NR_046069, intron 1 of 3)	1133.0	NR_046069	100040572.0	Mm.278873	NR_046069		Gm2848	-	predicted gene 2848	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-30723191-4	chr10	30723098	30723298	+	789.983337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358842, intron 2 of 14)	ID4|SINE|ID	-67331.0	NM_001111267	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28264756-2	chr17	28264656	28264856	+	591.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011145, intron 2 of 7)	intron (NM_011145, intron 2 of 7)	-6952.0	NR_045427	69050.0	Mm.486938	NR_045427	ENSMUSG00000002250	1810013A23Rik	-	RIKEN cDNA 1810013A23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100848218-4	chr11	100848077	100848277	+	952.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113563, intron 1 of 18)	intron (NM_001113563, intron 1 of 18)	2408.0	NM_001113563	20851.0	Mm.34064	NM_011489	ENSMUSG00000020919	Stat5b	-	signal transducer and activator of transcription 5B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-100664478-2	chr15	100664378	100664578	+	618.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001270537, intron 1 of 10)	intron (NM_001270537, intron 1 of 10)	5022.0	NM_001270537	668218.0	Mm.451225	NM_001270537	ENSMUSG00000098112	Bin2	-	bridging integrator 2	protein-coding	-1.8429182434137	-1.8129848525291	-1.82203695700074	-1.54461076807193	-1.84081697472045	-1.81102322372834	-1.81998775896484	-1.82814164409203	-1.43114970378833	0.684630132144154	1
Merged-chr14-50991313-4	chr14	50991227	50991427	+	818.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14|LTR|ERV1	-16424.0	NM_001162863	75019.0	Mm.318775	NM_029145	ENSMUSG00000021872	Rnase10	4930474F22Rik|Rah1	ribonuclease, RNase A family, 10 (non-active)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-51999376-2	chr11	51999276	51999476	+	620.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009458, intron 1 of 5)	intron (NM_009458, intron 1 of 5)	1090.0	NM_009458	22210.0	Mm.384918	NM_009458	ENSMUSG00000020390	Ube2b	E2-14k|HR6B|Rad6b|mHR6B	ubiquitin-conjugating enzyme E2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-17809842-2	chr16	17809742	17809942	+	568.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12560.0	NM_153790	224024.0	Mm.194950	NM_153790	ENSMUSG00000012017	Scarf2	NSR1|SREC-II|SRECRP-1|Scatf1|Srec2|SrecII	scavenger receptor class F, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-88802445-4	chr10	88802337	88802537	+	974.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175158, intron 18 of 61)	MIR|SINE|MIR	24377.0	NM_175158	70683.0	Mm.29631	NM_175158	ENSMUSG00000004356	Utp20	3830408P06Rik|AA617408|Drim|mDRIM|mDRIN	UTP20 small subunit processome component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-86204128-4	chr15	86204061	86204261	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10298.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-77070211-2	chr10	77070111	77070311	+	627.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001109991, intron 21 of 40)	intron (NM_001109991, intron 21 of 40)	36999.0	NM_031196	20509.0	Mm.265060	NM_031196	ENSMUSG00000001436	Slc19a1	AI323572|RFC|RFC-1|RFC1	solute carrier family 19 (folate transporter), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100496487-2	chr7	100496387	100496587	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011671, intron 2 of 7)	intron (NM_011671, intron 2 of 7)	3129.0	NM_011671	22228.0	Mm.171378	NM_011671	ENSMUSG00000033685	Ucp2	Slc25a8|UCP 2|UCPH	uncoupling protein 2 (mitochondrial, proton carrier)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-81402581-3	chr13	81402497	81402697	+	951.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 77 of 89)	L1MDa|LINE|L1	230547.0	NM_054053	110789.0	Mm.288694	NM_054053	ENSMUSG00000069170	Adgrv1	Frings|Gpr98|Mass1|Mgr1|VLGR1	adhesion G protein-coupled receptor V1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-114743647-3	chr9	114743548	114743748	+	932.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026036, intron 3 of 3)	intron (NM_026036, intron 3 of 3)	12445.0	NM_026036	67213.0	Mm.28858	NM_026036	ENSMUSG00000032434	Cmtm6	2810051A14Rik|AA536733|Cklfsf6	CKLF-like MARVEL transmembrane domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-44526861-4	chr11	44526758	44526958	+	943.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166553, intron 2 of 5)	intron (NM_001166553, intron 2 of 5)	7481.0	NM_001166553	74315.0	Mm.156771	NM_028862	ENSMUSG00000019189	Rnf145	3732413I11Rik|TMRF1	ring finger protein 145	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-43656009-2	chr7	43655909	43656109	+	577.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_031181, intron 6 of 6)	intron (NM_031181, intron 6 of 6)	4152.0	NM_031181	83382.0	Mm.157702	NM_031181	ENSMUSG00000030474	Siglece	Cd170|Siglec12|Siglec5|Siglec9|Siglecl1|mSiglec-E	sialic acid binding Ig-like lectin E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-8962473-2	chr4	8962373	8962573	+	971.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	HAL1|LINE|L1	211149.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	-0.162292817816564	-0.146987006214032	0.616293196366791	-0.155866408190282	0.22554468142014	-0.145857816536768	-0.150892616271099	0.156145359713266	-0.490551380287686	0.834108246641691	1
Merged-chr16-70313194-2	chr16	70313094	70313294	+	864.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028803)	promoter-TSS (NM_028803)	-755.0	NM_028803	74185.0	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-116060833-4	chr9	116060761	116060961	+	840.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028638, intron 14 of 14)	intron (NM_028638, intron 14 of 14)	114502.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-112386717-4	chr13	112386602	112386802	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-77368.0	NM_010560	16195.0	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-77465684-2	chr11	77465584	77465784	+	817.333313	f1_balb.idr|f1_c57bl6.idr	exon (NM_139130, exon 2 of 10)	exon (NM_139130, exon 2 of 10)	1771.0	NM_139130	216961.0	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-77762211-2	chr15	77762111	77762311	+	597.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_022410, intron 40 of 40)	intron (NM_022410, intron 40 of 40)	-5201.0	NM_001357895	239552.0	Mm.125650	NM_001081970	ENSMUSG00000056656	Apol8	9830006J20Rik|APOL-II|Apol2	apolipoprotein L 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-20736029-4	chr18	20735948	20736148	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019737, intron 1 of 8)	intron (NM_019737, intron 1 of 8)	10356.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-52510418-2	chr2	52510318	52510518	+	714.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037099, intron 2 of 13)	intron (NM_001037099, intron 2 of 13)	48193.0	NM_146123	12298.0	Mm.330223	NM_146123	ENSMUSG00000017412	Cacnb4	3110038O15Rik|Cchb4|lh	calcium channel, voltage-dependent, beta 4 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4151148-2	chr19	4151048	4151248	+	560.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011778, intron 6 of 10)	intron (NM_011778, intron 6 of 10)	2485.0	NM_011778	23789.0	Mm.276859	NM_011778	ENSMUSG00000024835	Coro1b	-	coronin, actin binding protein 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-60531514-2	chr10	60531414	60531614	+	933.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252635, intron 8 of 68)	intron (NM_001252635, intron 8 of 68)	131788.0	NM_001164374	100302688.0	Mm.444135	NM_001164374	ENSMUSG00000090439	Gm17455	-	predicted gene, 17455	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-150136073-1	chr2	150135973	150136173	+	550.0	f1_c57bl6.idr	intron (NM_023266, intron 1 of 2)	intron (NM_023266, intron 1 of 2)	605.0	NM_023266	104348.0	Mm.485851	NM_023266	ENSMUSG00000068134	Zfp120	AI315103|E030042N05Rik|F80|MZF31|Zfp844	zinc finger protein 120	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-105795093-3	chr12	105794990	105795190	+	767.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011112, intron 1 of 21)	intron (NM_011112, intron 1 of 21)	10393.0	NM_001347440	18789.0	Mm.255877	NM_011112	ENSMUSG00000021111	Papola	Pap|PapIII|Plap	poly (A) polymerase alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118827665-2	chr9	118827565	118827765	+	640.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 4 of 13)	intron (NM_001113514, intron 4 of 13)	-98871.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-94312787-4	chr16	94312683	94312883	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139145, intron 1 of 10)	intron (NM_139145, intron 1 of 10)	780.0	NM_139145	110948.0	Mm.30921	NM_139145	ENSMUSG00000040820	Hlcs	410I21.SP6|D16Jhu34	holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-119827335-8	chr8	119827239	119827439	+	962.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028071, intron 2 of 3)	intron (NM_028071, intron 2 of 3)	13240.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-128666021-2	chr4	128665921	128666121	+	717.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001195130, intron 1 of 14)	intron (NM_001195130, intron 1 of 14)	11319.0	NM_001195130	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-110462968-3	chr8	110462880	110463080	+	619.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172916, intron 24 of 86)	intron (NM_172916, intron 24 of 86)	39376.0	NR_105058	100861869.0	Mm.84499	NR_105058		Gm21283	-	predicted gene, 21283	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55796422-2	chr14	55796322	55796522	+	779.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7565.0	NM_001164108	56532.0	Mm.46612	NM_019955	ENSMUSG00000022221	Ripk3	2610528K09Rik|AW107945|Rip3	receptor-interacting serine-threonine kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-76974731-5	chr5	76974723	76974923	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_025691, exon 1 of 19)	exon (NM_025691, exon 1 of 19)	122.0	NM_025691	66661.0	Mm.296976	NM_025691	ENSMUSG00000036323	Srp72	5730576P14Rik|72kDa|AI132477|BC019196|C77589	signal recognition particle 72	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-117124898-4	chr4	117124822	117125022	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_024078, intron 1 of 6)	intron (NR_024078, intron 1 of 6)	803.0	NR_024078	78611.0	Mm.446227	NM_001033187		Btbd19	9530048O09Rik|BB115071	BTB (POZ) domain containing 19	ncRNA	4.45738435657656	5.35433075604332	3.85905644377029	4.7610895649126	5.0025098813138	4.6472506996949	4.55465840820663	5.27267687132827	0.241259127009292	0.54176243077589	0.954866069207078
Merged-chr2-164939254-2	chr2	164939154	164939354	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur2|SINE|Alu	-8965.0	NM_013599	17395.0	Mm.4406	NM_013599	ENSMUSG00000017737	Mmp9	AW743869|B/MMP9|Clg4b|Gel B|MMP-9|pro-MMP-9	matrix metallopeptidase 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34996085-2	chr17	34995985	34996185	+	585.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_033075)	TTS (NM_033075)	4661.0	NM_033075	110956.0	Mm.22506	NM_033075		D17H6S56E-5	G7e	DNA segment, Chr 17, human D6S56E 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-37245718-4	chr9	37245597	37245797	+	931.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145960, intron 1 of 18)	intron (NM_001145960, intron 1 of 18)	10041.0	NM_020258	56857.0	Mm.440037	NM_020258	ENSMUSG00000032122	Slc37a2	G3PP|Slc37a1|cI-2|ci2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-71863711-2	chr2	71863620	71863820	+	703.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_039557, intron 3 of 3).2	intron (NR_039557, intron 3 of 3).2	-9504.0	NM_172665	228026.0	Mm.34411	NM_172665	ENSMUSG00000006494	Pdk1	B830012B01|D530020C15Rik	pyruvate dehydrogenase kinase, isoenzyme 1	protein-coding	0.7907768858608	1.17254573535002	0.5277243211431	0.520924836037074	1.10928259956171	1.05807944593935	0.52966190504798	0.97234039013922	0.781255874343883	0.632373873383953	1
Merged-chr5-92398378-4	chr5	92398274	92398474	+	973.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181728, intron 2 of 7)	intron (NM_181728, intron 2 of 7)	10240.0	NM_001310665	109979.0	Mm.263514	NM_181728	ENSMUSG00000034842	Art3	4930569O04Rik|ARTC3	ADP-ribosyltransferase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-66769880-2	chr15	66769780	66769980	+	936.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_009375, intron 40 of 47)	intron (NM_009375, intron 40 of 47)	61949.0	NM_001029841	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-95744660-2	chr12	95744557	95744757	+	586.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_201518, intron 1 of 1)	intron (NM_201518, intron 1 of 1)	52431.0	NM_201518	399558.0	Mm.341948	NM_201518	ENSMUSG00000047414	Flrt2	-	fibronectin leucine rich transmembrane protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-34231751-3	chr19	34231626	34231826	+	727.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360720)	promoter-TSS (NM_001360720)	-899.0	NM_001360720	76630.0	Mm.130952	NM_029682	ENSMUSG00000024776	Stambpl1	1700095N21Rik|8230401J17Rik|ALMalpha|AMSH-FP	STAM binding protein like 1	protein-coding	2.06610149069701	1.36196728965804	1.58002182053311	2.39543533464872	2.19197602298018	2.46094732560515	2.75615065206677	2.59012702724695	1.39781616465451	0.126867222775331	0.557429054757721
Merged-chr8-72365970-3	chr8	72365846	72366046	+	781.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007944, intron 21 of 23)	X3_LINE|LINE|RTE-BovB	46884.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	1.10876897419364	0.539081131907295	0.52993335446612	0.522826712321111	0.805210139648948	0.922328228816828	1.34735243832276	0.982229683486156	1.67265744325172	0.304248796134063	1
Merged-chr2-19350404-2	chr2	19350304	19350504	+	565.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_126563, intron 3 of 3)	intron (NR_126563, intron 3 of 3)	6087.0	NR_126563	108871.0	Mm.107666	NR_126563		4930447M23Rik	-	RIKEN cDNA 4930447M23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65541858-4	chr9	65541760	65541960	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38227.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-21783395-4	chr13	21783293	21783493	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178207)	promoter-TSS (NM_178207)	4.0	NM_178207	319153.0	Mm.390558	NM_178207	ENSMUSG00000101972	Hist1h3i	H3-H	histone cluster 1, H3i	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-30651633-4	chr5	30651530	30651730	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175675, intron 1 of 5)	intron (NM_175675, intron 1 of 5)	3691.0	NM_175675	74919.0	Mm.247985	NM_175675	ENSMUSG00000029175	Slc35f6	4930471M23Rik|5730478O19Rik|ANT2BP|P40|Tango9	solute carrier family 35, member F6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-52133814-4	chr14	52133706	52133906	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_023879, exon 10 of 25)	exon (NM_023879, exon 10 of 25)	22903.0	NM_023879	77945.0	Mm.21662	NM_023879	ENSMUSG00000057132	Rpgrip1	0610005A07Rik|4930401L23Rik|4930505G06Rik|A930002K18Rik|AA415034|nmf247	retinitis pigmentosa GTPase regulator interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-111049863-3	chr5	111049779	111049979	+	808.9523929999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001267622, intron 2 of 22)	intron (NM_001267622, intron 2 of 22)	45735.0	NR_030482	735278.0		NR_030482	ENSMUSG00000076163	Mir701	Mirn701|mir-701|mmu-mir-701	microRNA 701	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-99323316-2	chr13	99323244	99323444	+	829.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_026873, intron 8 of 9)	Lx8|LINE|L1	21334.0	NM_026873	68927.0	Mm.276502	NM_026873	ENSMUSG00000021650	Ptcd2	1190005P08Rik	pentatricopeptide repeat domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-38556385-2	chr6	38556285	38556485	+	574.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001331223, exon 1 of 13)	5' UTR (NM_001331223, exon 1 of 13)	662.0	NM_001331223	192196.0	Mm.276133	NM_138680	ENSMUSG00000029823	Luc7l2	4930471C18Rik|AA522013|AU015269|CGI59|Cgi74	LUC7-like 2 (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-164075239-4	chr2	164075143	164075343	+	968.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021420, intron 1 of 10)	intron (NM_021420, intron 1 of 10)	1065.0	NM_021420	58231.0	Mm.234472	NM_021420	ENSMUSG00000018209	Stk4	AI447339|AU020804|Kas-2|Mst1|Ysk3	serine/threonine kinase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-16029541-7	chr19	16029444	16029644	+	955.839294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44469.0	NR_045355	100502653.0	Mm.149980	NR_045355	ENSMUSG00000097557	C130060C02Rik	-	RIKEN cDNA C130060C02 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-83638942-2	chr10	83638842	83639042	+	832.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_145220, intron 2 of 20)	ORR1F|LTR|ERVL-MaLR	9722.0	NM_145220	216190.0	Mm.282985	NM_145220	ENSMUSG00000020263	Appl2	Dip3b	adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6342215-2	chr19	6342115	6342315	+	914.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_117093, intron 3 of 30)	intron (NR_117093, intron 3 of 30)	1055.0	NR_117093	26412.0	Mm.25860	NM_009006	ENSMUSG00000024948	Map4k2	AI385662|BL44|GCK|Rab8ip	mitogen-activated protein kinase kinase kinase kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-3998128-4	chr11	3998023	3998223	+	811.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001177703, exon 3 of 3)	exon (NM_001177703, exon 3 of 3)	8190.0	NM_001177691	53897.0	Mm.103414	NM_016922	ENSMUSG00000049721	Gal3st1	Cst|Gcst	galactose-3-O-sulfotransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-172027387-4	chr1	172027273	172027473	+	906.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033509)	promoter-TSS (NM_033509)	-78.0	NM_033509	93840.0	Mm.36148	NM_033509	ENSMUSG00000026556	Vangl2	C530001F03Rik|Lootl|Lp|Lpp1|Ltap|Vang1l2|loop-tail|ska17|ska<m17Jus>|stbm|strabismus	VANGL planar cell polarity 2	protein-coding	2.50147081160467	2.96020853756509	4.15211576891144	2.76951980813314	3.09420585293152	3.55068966801801	1.55404674754299	2.66435082478648	-0.611818728086401	0.432689826424922	0.904952795603641
Merged-chr13-64432791-1	chr13	64432691	64432891	+	1000.0	f0_c57.idr	intron (NM_053180, intron 1 of 7)	CpG	238.0	NM_053180	105278.0	Mm.74982	NM_053180	ENSMUSG00000021483	Cdk20	4932702G04Rik|AU019450|AW558027|CDCH|Ccrk|PNQLARE|p42	cyclin-dependent kinase 20	protein-coding	4.93194513500004	5.28399648690221	5.55682392813599	5.50218791040772	5.52798192292455	5.61189490600589	4.74080723772172	5.28194486213482	-0.00568143897088508	0.985294844972978	0.998431161219273
Merged-chr12-75689000-8	chr12	75688744	75688944	+	772.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-19307.0	NM_028203	72338.0	Mm.341719	NM_028203	ENSMUSG00000045690	Wdr89	2600001A11Rik	WD repeat domain 89	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-9947885-4	chr3	9947783	9947983	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64702.0	NM_001272097	16592.0	Mm.741	NM_010634	ENSMUSG00000027533	Fabp5	E-FABP|Fabpe|Klbp|PA-FABP|mal1	fatty acid binding protein 5, epidermal	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19221573-3	chr7	19221446	19221646	+	935.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_175668, exon 2 of 2)	5' UTR (NM_175668, exon 2 of 2)	-6843.0	NM_207525	403187.0	Mm.239583	NM_207525	ENSMUSG00000052214	Opa3	D630048P19Rik|Gm1425|Gm472	optic atrophy 3	protein-coding	2.75116014000058	3.41618881387	2.73901687254205	2.34218095837684	3.5558098595851	3.83365627816119	3.77688565344413	3.60345374129535	1.35089826242122	0.0210808694775443	0.185976670582042
Merged-chr9-61024917-4	chr9	61024810	61025010	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7841.0	NR_040767	330956.0	Mm.207985	NR_040767	ENSMUSG00000111290	Gm5122	A430102L10	predicted gene 5122	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3297806-4	chr12	3297666	3297866	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016676, intron 1 of 5)	B1_Mm|SINE|Alu	12203.0	NM_016676	19325.0	Mm.378993	NM_016676	ENSMUSG00000020671	Rab10	AW107754	RAB10, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-109118065-4	chr4	109117950	109118150	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001134791)	promoter-TSS (NM_001134791)	-14.0	NM_001134791	100273.0	Mm.366315	NM_133885	ENSMUSG00000028559	Osbpl9	2600011I06Rik|AU015843|Orp-9	oxysterol binding protein-like 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-89374055-4	chr15	89373923	89374123	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001111288)	promoter-TSS (NM_001111288)	-205.0	NM_001111288	100126824.0	Mm.287977	NM_001111288	ENSMUSG00000091780	Sco2	-	SCO2 cytochrome c oxidase assembly protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-170912449-4	chr1	170912340	170912540	+	978.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029984, intron 2 of 5)	intron (NM_001029984, intron 2 of 5)	501.0	NM_001029984	435653.0	Mm.337931	NM_001029984	ENSMUSG00000070524	Fcrlb	FREB-2|FREB2|FcRL2|Fcrlm2|Fcry|mFCRL2	Fc receptor-like B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81386211-2	chr10	81386111	81386311	+	826.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_105878)	promoter-TSS (NR_105878)	-136.0	NR_105878	102466763.0		NR_105878	ENSMUSG00000098811	Mir6913	Gm27788|mmu-mir-6913	microRNA 6913	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-51413579-2	chr13	51413479	51413679	+	693.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010101, intron 1 of 1)	intron (NM_010101, intron 1 of 1)	4961.0	NM_010101	13610.0	Mm.136736	NM_010101	ENSMUSG00000067586	S1pr3	AI132464|Edg3|Lpb3|S1p3	sphingosine-1-phosphate receptor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-9966417-2	chr19	9966317	9966517	+	738.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14183.0	NR_073181	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-104581762-3	chr9	104581656	104581856	+	855.783325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028719, intron 1 of 15)	intron (NM_028719, intron 1 of 15)	12273.0	NM_028719	74020.0	Mm.326240	NM_028719	ENSMUSG00000032564	Cpne4	3632411M23Rik|4933406O10Rik	copine IV	protein-coding	2.61164074747691	2.37181293617474	3.18975482539287	2.9404627832967	2.81711727097496	2.69843537336464	2.95118758174125	3.1193076321292	0.16628924238155	0.805821868643767	0.998431161219273
Merged-chr3-15428103-4	chr3	15427982	15428182	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1655.0	NM_001002898	320832.0	Mm.330924	NM_178792	ENSMUSG00000095788	Sirpb1a	9930027N05Rik|SIRP-beta|Sirpb|Sirpb1	signal-regulatory protein beta 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-33398703-2	chr14	33398603	33398803	+	836.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310452, intron 4 of 10)	intron (NM_001310452, intron 4 of 10)	12321.0	NM_001310452	26419.0	Mm.21495	NM_016700	ENSMUSG00000021936	Mapk8	AI849689|JNK|JNK1|Prkm8|SAPK1	mitogen-activated protein kinase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-77790965-1	chr14	77790865	77791065	+	845.0	f0_balb.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	8003.0	NM_001033440	380920.0	Mm.297771	NM_001033440	ENSMUSG00000075512	Gm1587	-	predicted gene 1587	protein-coding	2.16253609510463	2.72422259072926	2.62945671771879	1.72744072701557	2.82349917665316	2.45910666648862	3.75373614605163	3.05025388721319	1.43178079475152	0.060002502927765	0.362954618211797
Merged-chr6-29797372-2	chr6	29797272	29797472	+	551.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001171000, intron 1 of 16)	MLT1G3|LTR|ERVL-MaLR	28929.0	NM_001171000	74340.0	Mm.210899	NM_021414	ENSMUSG00000029772	Ahcyl2	4631427C17Rik|AI227036|Adohcyase3|mKIAA0828	S-adenosylhomocysteine hydrolase-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-11253720-3	chr8	11253632	11253832	+	871.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009931, intron 2 of 51)	intron (NM_009931, intron 2 of 51)	-59073.0	NM_009932	12827.0	Mm.181021	NM_009932	ENSMUSG00000031503	Col4a2	Col4a-2	collagen, type IV, alpha 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-75059933-2	chr14	75059833	75060033	+	773.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_030568, intron 2 of 3)	(TG)n|Simple_repeat|Simple_repeat	43906.0	NM_198642	271221.0	Mm.320280	NM_198642	ENSMUSG00000034959	Rubcnl	5031414D18Rik|Gm744|Gm911|Kiaa0226l	RUN and cysteine rich domain containing beclin 1 interacting protein like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-128627158-3	chr4	128627044	128627244	+	649.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28|LTR|ERVL	-8525.0	NM_205823	384059.0	Mm.331901	NM_205823	ENSMUSG00000062545	Tlr12	Gm1365|Tlr11	toll-like receptor 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-35506833-4	chr2	35506730	35506930	+	964.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45381.0	NM_001145821	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-61843647-3	chr11	61843536	61843736	+	822.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013881, intron 3 of 26)	intron (NM_013881, intron 3 of 26)	11456.0	NM_013881	29869.0	Mm.162025	NM_013881	ENSMUSG00000004798	Ulk2	A830085I22Rik|AU015340|Unc51.2|mKIAA0623	unc-51 like kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-29823383-4	chr11	29823307	29823507	+	841.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_176829, exon 1 of 1)	3' UTR (NM_176829, exon 1 of 1)	2261.0	NM_176829	216622.0	Mm.443260	NM_176829	ENSMUSG00000078157	4931440F15Rik	Fem1ab	RIKEN cDNA 4931440F15 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-154945315-2	chr4	154945221	154945421	+	807.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15602.0	NM_010419	15208.0	Mm.137268	NM_010419	ENSMUSG00000048001	Hes5	bHLHb38	hes family bHLH transcription factor 5	protein-coding	1.25201402022953	0.36409275140596	0.355603103269113	0.349002673938743	1.04663736102594	0.365996691871855	0.85843464106244	0.532781223238948	0.329086211274976	0.858745194221197	1
Merged-chr4-83303667-4	chr4	83303549	83303749	+	923.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027238, intron 1 of 19)	intron (NM_027238, intron 1 of 19)	20540.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	-0.0689361829480604	0.132373016390094	0.58873265575919	0.0955952797377784	0.0727379195218509	0.295418790136291	-0.0580177814025959	-0.0621426072243416	-1.20688184523458	0.558764867394383	1
Merged-chr2-129186355-4	chr2	129186217	129186417	+	775.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5644.0	NR_045264	100048701.0	Mm.428544	NR_045264	ENSMUSG00000084826	AI847159	-	expressed sequence AI847159	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-9945345-4	chr1	9945252	9945452	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-1234.0	NR_024067	73824.0	Mm.28311	NR_024067	ENSMUSG00000098234	Snhg6	1110008H02Rik	small nucleolar RNA host gene 6	ncRNA	3.81737157623057	4.32483968923874	3.99444832317138	4.01454324019283	4.11819681770205	3.92805933293586	4.89550284707786	4.58172953912875	0.524837812684794	0.222044255862936	0.713583934962101
Merged-chr13-41788251-3	chr13	41788144	41788344	+	775.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145875, intron 4 of 6)	intron (NM_001145875, intron 4 of 6)	59244.0	NM_175417	109254.0	Mm.25195	NM_175417	ENSMUSG00000058022	Adtrp	9530008L14Rik	androgen dependent TFPI regulating protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-123487834-3	chr7	123487713	123487913	+	592.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081329, intron 5 of 6)	ORR1D1-int|LTR|ERVL-MaLR	12813.0	NM_001081329	210162.0	Mm.135397	NM_175435	ENSMUSG00000030757	Zkscan2	9430065N20Rik|AW493225|Zfp694	zinc finger with KRAB and SCAN domains 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-51844221-1	chr12	51844121	51844321	+	749.5	f0_balb.idr	Intergenic	Intergenic	-14685.0	NM_144788	207304.0	Mm.249391	NM_144788	ENSMUSG00000035247	Hectd1	A630086P08Rik|AI844876|b2b327Clo|opm	HECT domain E3 ubiquitin protein ligase 1	protein-coding	-0.362497628781902	-0.348557564989812	-0.0164813840550938	-0.3566403986582	-0.361625584804076	-0.347530554477529	0.442438815912574	-0.183490935328364	1.81437594736554	0.466099543340198	1
Merged-chr8-117498454-6	chr8	117498401	117498601	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172285, intron 1 of 32)	CpG	226.0	NM_172285	234779.0	Mm.192699	NM_172285	ENSMUSG00000034330	Plcg2	PLC-gamma-2|PLCgamma2|Plcg-2	phospholipase C, gamma 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106073942-2	chr11	106073842	106074042	+	733.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_027346)	TTS (NM_027346)	7835.0	NM_027346	70207.0	Mm.343857	NM_027346	ENSMUSG00000001983	Taco1	2310066I18Rik|Ccdc44	translational activator of mitochondrially encoded cytochrome c oxidase I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-30215946-2	chr17	30215846	30216046	+	994.875	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_027060, exon 11 of 11)	3' UTR (NM_027060, exon 11 of 11)	180234.0	NR_030688	623169.0	Mm.440508	NR_030688		Gm6402	EG623169	ribosomal protein S17 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-109105399-2	chr4	109105299	109105499	+	971.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133885, intron 4 of 22)	intron (NM_133885, intron 4 of 22)	12637.0	NM_173350	100273.0	Mm.366315	NM_133885	ENSMUSG00000028559	Osbpl9	2600011I06Rik|AU015843|Orp-9	oxysterol binding protein-like 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-67464537-2	chr18	67464437	67464637	+	838.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144867)	promoter-TSS (NM_144867)	-312.0	NM_144867	225655.0	Mm.221420	NM_144867	ENSMUSG00000024530	Prelid3a	A230074A19Rik|BC019561|Slmo1	PRELI domain containing 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-92383238-2	chr2	92383138	92383338	+	569.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001202446)	TTS (NM_001202446)	320.0	NM_183112	75641.0	Mm.330409	NM_183112	ENSMUSG00000044916	1700029I15Rik	1700021K07Rik	RIKEN cDNA 1700029I15 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-36985810-4	chr16	36985717	36985917	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358217, intron 1 of 3)	ORR1D1|LTR|ERVL-MaLR	4650.0	NM_001358217	207215.0	Mm.211899	NM_001037321	ENSMUSG00000047746	Fbxo40	9830003A13Rik|mKIAA1195	F-box protein 40	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180365327-4	chr1	180365250	180365450	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081175, intron 2 of 7)	intron (NM_001081175, intron 2 of 7)	-34801.0	NR_003623	277333.0	Mm.389223	NM_199472		Gm5069	EG277333	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10221211-2	chr19	10221111	10221311	+	592.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001033481, exon 8 of 26)	exon (NM_001033481, exon 8 of 26)	15178.0	NM_001163431	69038.0	Mm.375100	NM_026919	ENSMUSG00000036372	Tmem258	1810006K21Rik	transmembrane protein 258	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-86904369-2	chr17	86904269	86904469	+	573.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12979.0	NM_001277980	78469.0	Mm.67234	NM_030104	ENSMUSG00000037689	Tmem247	1700090G07Rik	transmembrane protein 247	protein-coding	-0.486093302973885	-0.463302812346708	-0.470601096171843	-0.254978445634966	-0.484624408396681	-0.461679012367454	0.91705848392134	-0.475331461918535	3.31360382869161	0.175820092523247	1
Merged-chr11-96963768-4	chr11	96963671	96963871	+	791.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_003293, exon 6 of 6)	non-coding (NR_003293, exon 6 of 6)	13917.0	NM_030220	78912.0	Mm.491183	NM_030220	ENSMUSG00000018678	Sp2	4930480I16Rik|mKIAA0048	Sp2 transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-10068224-3	chr12	10068126	10068326	+	941.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-301745.0	NM_027588	70881.0	Mm.272843	NM_027588	ENSMUSG00000020622	Nt5c1b	4921514H13Rik|AIRP|CN-IB|cN1B	5'-nucleotidase, cytosolic IB	protein-coding	-0.752703249331578	-1.19327662759868	-1.20367200772054	-1.21221108246634	-1.07350664517746	-1.1910239053609	-1.2013187215212	-1.21068259216948	-1.39419391438984	0.678133685438574	1
Merged-chr11-86814370-2	chr11	86814270	86814470	+	563.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MMVL30-int|LTR|ERV1	-6710.0	NM_026191	67487.0	Mm.260627	NM_026191	ENSMUSG00000018425	Dhx40	2410016C14Rik|ARG147|DDX40|PAD	DEAH (Asp-Glu-Ala-His) box polypeptide 40	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-15212900-2	chr18	15212800	15213000	+	649.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61454.0	NM_134112	106931.0	Mm.329299	NM_134112	ENSMUSG00000036225	Kctd1	4933402K10Rik|AI661543|AW553000	potassium channel tetramerisation domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-8879499-2	chr10	8879375	8879575	+	870.7999880000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 1 of 19)	intron (NM_175155, intron 1 of 19)	6595.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	3.4750267879422	3.55777557486497	3.82653228276462	3.34276424672232	3.69128841363747	4.04545641817191	3.55420513898418	3.60339814271149	0.260839372124519	0.601159213118136	0.973232025338218
Merged-chr10-20788977-1	chr10	20788877	20789077	+	779.5	f0_balb.idr	Intergenic	RLTR45|LTR|ERVK	-63899.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-65466315-4	chr18	65466230	65466430	+	947.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172833, intron 12 of 15)	intron (NM_172833, intron 12 of 15)	35333.0	NM_172833	240354.0	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-86634591-4	chr11	86634471	86634671	+	888.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356531, intron 7 of 11)	intron (NM_001356531, intron 7 of 11)	36704.0	NM_001356531	75909.0	Mm.390398	NM_029478	ENSMUSG00000018171	Vmp1	3110098I04Rik|4930579A11Rik|AI787464|Tango5|Tmem49|mir-21a|ni-2	vacuole membrane protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-121650976-2	chr8	121650876	121651076	+	671.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_080855, intron 1 of 12)	intron (NM_080855, intron 1 of 12)	957.0	NM_080855	142682.0	Mm.103202	NM_080855	ENSMUSG00000061410	Zcchc14	AA792890|BDG29	zinc finger, CCHC domain containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-79253935-2	chr2	79253835	79254035	+	846.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1491.0	NM_010576	16401.0	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-30197023-3	chr17	30196893	30197093	+	862.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356265, intron 5 of 5)	L1MD3|LINE|L1	191954.0	NM_001356265	21769.0	Mm.220972	NM_148926	ENSMUSG00000044477	Zfand3	AW539211|TEG-27|Tex27	zinc finger, AN1-type domain 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-75786400-2	chr15	75786300	75786500	+	996.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172121, intron 4 of 11)	intron (NM_172121, intron 4 of 11)	-38478.0	NM_194350	378435.0	Mm.309589	NM_194350	ENSMUSG00000047591	Mafa	RIPE3b1	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein A (avian)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-26564633-3	chr10	26564529	26564729	+	762.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	110022.0	NR_033633	667572.0	Mm.482728	NR_033633	ENSMUSG00000098179	Gm8709	EG667572	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-20742471-4	chr11	20742376	20742576	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290545)	promoter-TSS (NM_001290545)	-920.0	NM_181411	216549.0	Mm.356580	NM_181411	ENSMUSG00000049659	Aftph	-	aftiphilin	protein-coding	2.42452508108194	1.34758503757694	1.80448876130767	3.25938322793927	2.34885885154112	1.35625203719126	2.92796302627258	2.66977023159448	0.035497999805423	0.971527142672615	0.998431161219273
Merged-chr4-141565390-1	chr4	141565290	141565490	+	641.0	f0_balb.idr	Intergenic	Intergenic	19228.0	NR_030695	320456.0	Mm.32859	NM_177163		B330016D10Rik	-	RIKEN cDNA B330016D10 gene	ncRNA	1.80362542492995	2.25966415178717	1.09904979526807	1.64752627714038	2.10102014398633	1.12767125157485	1.54231016377502	2.37512506088154	0.311018437481723	0.785744888821204	0.998431161219273
Merged-chr19-56728254-2	chr19	56728154	56728354	+	876.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5882.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-182937853-4	chr1	182937747	182937947	+	914.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16941.0	NM_016928	53791.0	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-65955268-2	chr3	65955168	65955368	+	704.5	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001355432, exon 4 of 12)	5' UTR (NM_001355432, exon 4 of 12)	2981.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-136664731-2	chr5	136664631	136664831	+	770.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28415.0	NM_001303019	59310.0	Mm.5178	NM_021611	ENSMUSG00000005474	Myl10	1700027I08Rik|Mylc2pl|PLRLC	myosin, light chain 10, regulatory	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27418211-4	chr2	27418067	27418267	+	879.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009500, intron 1 of 27)	intron (NM_009500, intron 1 of 27)	9441.0	NR_133905	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-71558517-2	chr18	71558417	71558617	+	624.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007831, intron 9 of 28)	intron (NM_007831, intron 9 of 28)	792552.0	NM_007831	13176.0	Mm.167882	NM_007831	ENSMUSG00000060534	Dcc	C030036D22Rik|Igdcc1	deleted in colorectal carcinoma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34604761-2	chr17	34604667	34604867	+	926.0	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-1094.0	NM_001163379	55979.0	Mm.8684	NM_018862	ENSMUSG00000034254	Agpat1	1-AGP|1-AGPAT|AW047140	1-acylglycerol-3-phosphate O-acyltransferase 1 (lysophosphatidic acid acyltransferase, alpha)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-30622586-6	chr5	30622526	30622726	+	945.305542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010608, exon 2 of 2)	exon (NM_010608, exon 2 of 2)	-25310.0	NR_049199	100885838.0		NR_049199	ENSMUSG00000093710	Mir5625	Gm23930|mmu-mir-5625	microRNA 5625	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-181189577-2	chr2	181189477	181189677	+	652.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	2330.0	NM_001356427	66496.0	Mm.213943	NM_025598	ENSMUSG00000016344	Ppdpf	0610012G23Rik|2610317A05Rik|2700038C09Rik|3110053G12Rik	pancreatic progenitor cell differentiation and proliferation factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99182172-2	chr7	99182052	99182252	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026384, intron 1 of 7)	PB1D7|SINE|Alu	561.0	NM_026384	67800.0	Mm.180189	NM_026384	ENSMUSG00000030747	Dgat2	0610010B06Rik|ARAT|DGAT-2	diacylglycerol O-acyltransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97627118-2	chr11	97627037	97627237	+	573.666626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_175332)	TTS (NM_175332)	2579.0	NM_175332	103551.0	Mm.24506	NM_175332	ENSMUSG00000043439	Epop	AA409164|AI413509|AW539173|E13|E130012A19Rik|esPRC2p48	elongin BC and polycomb repressive complex 2 associated protein	protein-coding	1.04471296738541	0.681154384140262	0.468305030195158	1.0246942499634	0.742712044596008	1.24474705962503	0.47021739768556	0.462767279488475	-0.25276246786972	0.880262178257864	1
Merged-chr13-55178079-2	chr13	55177979	55178179	+	643.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	25261.0	NM_008011	14186.0	Mm.276715	NM_008011	ENSMUSG00000005320	Fgfr4	Fgfr-4	fibroblast growth factor receptor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-82045527-4	chr11	82045445	82045645	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013654)	promoter-TSS (NM_013654)	-167.0	NM_013654	20306.0	Mm.341574	NM_013654	ENSMUSG00000035373	Ccl7	MCP-3|Scya7|fic|marc|mcp3	chemokine (C-C motif) ligand 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-60366142-2	chr10	60366042	60366242	+	752.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028732, intron 4 of 6)	(TG)n|Simple_repeat|Simple_repeat	19291.0	NM_028732	74048.0	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-73584796-4	chr2	73584691	73584891	+	771.395874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_153820)	promoter-TSS (NR_153820)	-69.0	NR_153820	102633437.0		NR_153820		Chrna1os	Gm13705|Gm31264	cholinergic receptor, nicotinic, alpha polypeptide 1 (muscle), opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-149219962-4	chr3	149219848	149220048	+	905.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54789.0	NR_040591	381482.0	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA	1.45826691929835	1.51324505817046	1.593138466205	1.09461954968858	1.67510178263106	2.10158134363198	0.9036041364181	0.88864908429123	0.294589004335392	0.819253782781627	0.998431161219273
Merged-chr3-94841629-1	chr3	94841529	94841729	+	542.0	f0_balb.idr	intron (NM_001165948, intron 1 of 18)	intron (NM_001165948, intron 1 of 18)	4062.0	NM_172683	229584.0	Mm.274787	NM_172683	ENSMUSG00000038902	Pogz	9530006B08Rik	pogo transposable element with ZNF domain	protein-coding	1.75899289523514	1.61189227912827	0.984966912890727	1.51046747328673	2.38992105125505	1.45544888388761	1.40813231635599	1.18818745034036	0.683798176606086	0.561872990422586	0.960362415684079
Merged-chr5-101941592-1	chr5	101941492	101941692	+	545.0	f1_balb.idr	exon (NM_172882, exon 13 of 67)	exon (NM_172882, exon 13 of 67)	128329.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-42088171-1	chr19	42088071	42088271	+	740.0	f1_balb.idr	Intergenic	Intergenic	-1801.0	NM_198108	226123.0	Mm.259441	NM_198108	ENSMUSG00000049670	Morn4	-	MORN repeat containing 4	protein-coding	1.27727646168002	0.507549837906288	1.0071311135738	0.489347328730688	1.43742857372408	0.91248334735987	0.499591346190387	0.490746887335267	0.166698251825637	0.923640639302797	0.998431161219273
Merged-chr8-120746899-2	chr8	120746799	120746999	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301811, intron 4 of 8)	intron (NM_001301811, intron 4 of 8)	8260.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-133132160-4	chr1	133132076	133132276	+	965.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_133819, exon 1 of 2)	exon (NM_133819, exon 1 of 2)	1010.0	NM_133819	108954.0	Mm.293628	NM_133819	ENSMUSG00000046062	Ppp1r15b	1810033K10Rik|AI606441|C530022L24Rik|CReP	protein phosphatase 1, regulatory (inhibitor) subunit 15b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-56661179-2	chr19	56661079	56661279	+	715.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61193.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-48149390-4	chr4	48149262	48149462	+	843.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026343, intron 3 of 7)	intron (NM_026343, intron 3 of 7)	24443.0	NM_026343	67727.0	Mm.171334	NM_026343	ENSMUSG00000061455	Stx17	4833418L03Rik|6330411F21Rik|9030425C21Rik|AW048351	syntaxin 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-58273141-4	chr9	58273034	58273234	+	949.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19970.0	NM_026942	69106.0	Mm.216502	NM_026942	ENSMUSG00000032333	Stoml1	1810015E19Rik|AI847431|SLP1|STORP|UNC24|WPB72	stomatin-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30319475-1	chr7	30319375	30319575	+	706.0	f1_c57bl6.idr	TTS (NM_001290565)	TTS (NM_001290565)	2900.0	NM_001033140	68332.0	Mm.6844	NM_001033140	ENSMUSG00000074211	Sdhaf1	0610010E21Rik|AI430885|AW490662|Lyrm8	succinate dehydrogenase complex assembly factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-95325807-3	chr13	95325681	95325881	+	867.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302539)	promoter-TSS (NM_001302539)	956.0	NM_028106	72114.0	Mm.3774	NM_028106	ENSMUSG00000041995	Zbed3	0610037K01Rik|2610005H11Rik|AU018975|AU024588	zinc finger, BED type containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6922653-2	chr19	6922553	6922753	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007953)	promoter-TSS (NM_007953)	-845.0	NM_007953	26379.0	Mm.386776	NM_007953	ENSMUSG00000024955	Esrra	ERRalpha|Err1|Estrra|Nr3b1	estrogen related receptor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-113256044-2	chr7	113255916	113256116	+	874.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001243048, intron 2 of 16)	intron (NM_001243048, intron 2 of 16)	48551.0	NM_007489	11865.0	Mm.33970	NM_007489	ENSMUSG00000055116	Arntl	Arnt3|BMAL1b|Bmal1|MOP3|bHLHe5|bmal1b'	aryl hydrocarbon receptor nuclear translocator-like	protein-coding	0.662203196737697	-0.0417584070604604	1.40641260674321	-0.0595926627729376	-0.0709666475136209	-0.0395426599646379	-0.0495111647400359	-0.0582084227350263	-4.47847268515627	0.0359068750068934	1
Merged-chr2-28840439-4	chr2	28840375	28840575	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166033)	promoter-TSS (NM_001166033)	69.0	NM_001033294	227674.0	Mm.44179	NM_001033294	ENSMUSG00000026806	Ddx31	5830444G11Rik|Gm997	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 31	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-59036661-2	chr9	59036561	59036761	+	989.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001042752)	promoter-TSS (NM_001042752)	-220.0	NM_008684	18007.0	Mm.42249	NM_008684	ENSMUSG00000032340	Neo1	2610028H22Rik|AI327052|D930014N22Rik|Igdcc2	neogenin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-26483740-4	chr2	26483614	26483814	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008714, intron 4 of 33)	intron (NM_008714, intron 4 of 33)	-13595.0	NR_105962	102465602.0		NR_105962	ENSMUSG00000098548	Mir6996	Gm27531|mmu-mir-6996	microRNA 6996	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69877057-4	chr11	69876957	69877157	+	900.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195710, intron 4 of 6)	intron (NM_001195710, intron 4 of 6)	961.0	NM_001195710	100503361.0	Mm.340490	NM_001195710	ENSMUSG00000094845	Tmem95	432576	transmembrane protein 95	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-85395703-4	chr17	85395604	85395804	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028576, intron 6 of 10)	intron (NM_028576, intron 6 of 10)	222692.0	NR_038084	100043902.0	Mm.150838	NR_015385	ENSMUSG00000093460	Six3os1	D17Mgi26|E130112H22Rik|Rncr1|Six3os	SIX homeobox 3, opposite strand 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-25879814-2	chr17	25879714	25879914	+	656.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001100454, intron 1 of 1)	intron (NM_001100454, intron 1 of 1)	1044.0	NM_001100454	215001.0	Mm.328871	NM_001100454	ENSMUSG00000071192	Wfikkn1	Gasp2|Wfikkn	WAP, FS, Ig, KU, and NTR-containing protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-75178838-7	chr14	75178680	75178880	+	978.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008879, intron 2 of 16)	intron (NM_008879, intron 2 of 16)	42355.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-56178743-4	chr13	56178636	56178836	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001168615, exon 1 of 3)	5' UTR (NM_001168615, exon 1 of 3)	149.0	NM_145976	212937.0	Mm.116697	NM_145976	ENSMUSG00000049625	Tifab	-	TRAF-interacting protein with forkhead-associated domain, family member B	protein-coding	5.79800932210125	5.93018613841635	6.05072866453789	5.99092693345507	5.55937712123807	6.1063056288103	6.55617522853386	6.14088019914639	0.20287811099711	0.420450788094798	0.900239863385666
Merged-chr3-87329428-2	chr3	87329305	87329505	+	842.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-28476.0	NM_009690	11801.0	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	2.05783665539784	1.1583786583694	0.867098123071698	2.45585980194869	2.00223173978895	0.894650450592737	0.872152301368252	1.29023190160388	-1.23339931344449	0.357677730362599	0.854410155738743
Merged-chr9-62909399-2	chr9	62909299	62909499	+	684.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019663, intron 7 of 13)	intron (NM_019663, intron 7 of 13)	-47375.0	NR_003965	677044.0	Mm.422004	NR_003965	ENSMUSG00000074250	Gm10653	-	ribsomal protein S2 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36471721-4	chr18	36471642	36471842	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-17247.0	NM_026027	67199.0	Mm.30184	NM_026027	ENSMUSG00000024346	Pfdn1	2700086I23Rik|AA408327|AU044714	prefoldin 1	protein-coding	5.69715781224781	5.4387241122951	5.13359618004232	6.01594109349566	6.31004624685814	5.507640393729	5.17007213041767	6.4407897417421	0.391778821506583	0.219781863416745	0.710826235364411
Merged-chr5-5481902-3	chr5	5481810	5482010	+	895.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2767.0	NM_001200025	381716.0	Mm.276086	NM_001200025	ENSMUSG00000079666	1700015F17Rik	Gm1686	RIKEN cDNA 1700015F17 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-116708460-4	chr4	116708362	116708562	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025962)	promoter-TSS (NM_025962)	-77.0	NM_025962	67096.0	Mm.252785	NM_025962	ENSMUSG00000028690	Mmachc	1810037K07Rik|CblC	methylmalonic aciduria cblC type, with homocystinuria	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46130580-2	chr8	46130480	46130680	+	830.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6434.0	NM_207213	102141.0	Mm.267258	NM_207213	ENSMUSG00000038291	Snx25	AI661919|Gm1699|Gm173|Sbbi31	sorting nexin 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-29492937-4	chr17	29492834	29493034	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008842, intron 4 of 5)	intron (NM_008842, intron 4 of 5)	1889.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-56257491-2	chr9	56257391	56257591	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172924, intron 4 of 6)	intron (NM_172924, intron 4 of 6)	-96421.0	NM_019793	56434.0	Mm.28484	NM_019793	ENSMUSG00000032324	Tspan3	1700055K04Rik|TM4-A|Tm4sf8	tetraspanin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-66076271-6	chr17	66076134	66076334	+	945.486084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025572, intron 1 of 12)	intron (NM_001025572, intron 1 of 12)	812.0	NM_001025572	106585.0	Mm.34706	NM_001025572	ENSMUSG00000034647	Ankrd12	2900001A12Rik|AI447928|ANCO-2|AV347965|GAC-1|mKIAA0874	ankyrin repeat domain 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124598707-4	chr5	124598627	124598827	+	984.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026486)	promoter-TSS (NM_026486)	-22.0	NM_026486	67978.0	Mm.1158	NM_026486		Tctn2	4432405B04Rik|Tect2	tectonic family member 2	protein-coding	3.58438176343939	3.47661119857079	3.60464768837408	3.92926533408678	2.940487501486	3.5016986863193	3.38741732854217	2.86637102817812	-0.737451105568739	0.177010130407721	0.646570188136342
Merged-chr17-33550505-1	chr17	33550405	33550605	+	562.0	f1_c57bl6.idr	exon (NM_172619, exon 22 of 25)	exon (NM_172619, exon 22 of 25)	-5202.0	NM_053214	17916.0	Mm.42019	NM_053214	ENSMUSG00000024300	Myo1f	C330006B10Rik	myosin IF	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67629795-3	chr10	67629716	67629916	+	729.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57857.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-55481513-2	chr13	55481413	55481613	+	578.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177371, intron 7 of 14)	(CGGGG)n|Simple_repeat|Simple_repeat	-3737.0	NR_105909	102465569.0		NR_105909	ENSMUSG00000098341	Mir6944	Gm27710|mmu-mir-6944	microRNA 6944	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-78861676-4	chr12	78861589	78861789	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026114)	promoter-TSS (NM_026114)	-51.0	NM_023721	73834.0	Mm.311549	NM_023721	ENSMUSG00000021114	Atp6v1d	1110004P10Rik|Atp6m|VATD|Vma8	ATPase, H+ transporting, lysosomal V1 subunit D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-149340910-4	chr4	149340821	149341021	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022022, intron 22 of 26)	intron (NM_022022, intron 22 of 26)	6282.0	NR_131918	74310.0	Mm.440455	NR_131918	ENSMUSG00000085286	Ube4bos3	1700121F15Rik	ubiquitination factor E4B, opposite strand 3	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-3743122-2	chr16	3743010	3743210	+	696.5	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_148924)	promoter-TSS (NM_148924)	-989.0	NM_148924	74120.0	Mm.29081	NM_148924	ENSMUSG00000022529	Zfp263	1200014J04Rik|AI326880|AU020888|NT2|mFPM315	zinc finger protein 263	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-93161698-8	chr10	93161549	93161749	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146239, intron 1 of 16)	CpG	773.0	NM_146239	237459.0	Mm.217404	NM_146239	ENSMUSG00000020015	Cdk17	6430598J10Rik|Pctk2	cyclin-dependent kinase 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-66729647-4	chr15	66729541	66729741	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009375, exon 27 of 48)	exon (NM_009375, exon 27 of 48)	58871.0	NM_009375	21819.0	Mm.441333	NM_009375	ENSMUSG00000053469	Tg	Tgn|cog	thyroglobulin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-155580588-2	chr4	155580488	155580688	+	592.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355599, intron 2 of 10)	intron (NM_001355599, intron 2 of 10)	16773.0	NM_001355599	192185.0	Mm.28347	NM_138671	ENSMUSG00000029063	Nadk	4432404C02Rik|BC004012	NAD kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-27582451-2	chr15	27582351	27582551	+	741.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_020332, intron 8 of 11)	intron (NM_020332, intron 8 of 11)	10957.0	NR_106065	102466808.0		NR_106065	ENSMUSG00000098416	Mir7117	Gm27729|mmu-mir-7117	microRNA 7117	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-98763262-4	chr15	98763166	98763366	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007478)	promoter-TSS (NM_007478)	-148.0	NM_007478	11842.0	Mm.221298	NM_007478	ENSMUSG00000051853	Arf3	5430400P17Rik|AI854770	ADP-ribosylation factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25087839-2	chr7	25087739	25087939	+	687.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9336.0	NR_105855	102465968.0		NR_105855	ENSMUSG00000098441	Mir6537	Gm27808|mmu-mir-6537	microRNA 6537	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-124751427-4	chr4	124751258	124751458	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_151694)	promoter-TSS (NR_151694)	-4.0	NR_151694	102634646.0	Mm.348378	NR_151694		Gm12915	-	predicted gene 12915	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-72308297-2	chr7	72308197	72308397	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1702.0	NM_001024703	244049.0	Mm.217412	NM_001024703	ENSMUSG00000032776	Mctp2	Gm489	multiple C2 domains, transmembrane 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-149638100-4	chr4	149638003	149638203	+	936.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023051, intron 9 of 18)	intron (NM_023051, intron 9 of 18)	17464.0	NR_105990	102465983.0		NR_105990	ENSMUSG00000098580	Mir7023	Gm27912|mmu-mir-7023	microRNA 7023	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126929243-2	chr8	126929143	126929343	+	741.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16678.0	NM_024214	67952.0	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-131239307-2	chr3	131239207	131239407	+	643.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008212, intron 6 of 7)	intron (NM_008212, intron 6 of 7)	32794.0	NM_008212	15107.0	Mm.260164	NM_008212	ENSMUSG00000027984	Hadh	AA409008|AU019341|AW742602|HCDH|Hadhsc|Schad	hydroxyacyl-Coenzyme A dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-145741793-4	chr2	145741704	145741904	+	984.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033220, intron 3 of 3)	intron (NR_033220, intron 3 of 3)	40609.0	NR_033220	408057.0	Mm.486711	NR_033220	ENSMUSG00000087594	BC039771	-	cDNA sequence BC039771	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-29850861-2	chr16	29850791	29850991	+	845.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	128233.0	NR_037689	328657.0	Mm.425982	NM_001033403		Gm1968	-	predicted gene 1968	ncRNA	0.368543350084707	-0.0222470039100078	0.253208390313522	0.425247480505734	-0.0326132749749926	0.146696624990305	-0.0251065523649267	-0.0282204692107403	-2.89654950685208	0.182578526652045	1
Merged-chr7-141458551-4	chr7	141458453	141458653	+	919.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025802, intron 5 of 7)	intron (NM_025802, intron 5 of 7)	-2541.0	NM_001025103	213573.0	Mm.386851	NM_001025103	ENSMUSG00000048200	Cracr2b	6330520A15Rik|BC026645|Cracr2a|Efcab4|Efcab4a	calcium release activated channel regulator 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-102396093-1	chr7	102395993	102396193	+	550.0	f0_balb.idr	intron (NM_009287, intron 3 of 11)	L2a|LINE|L2	-45602.0	NM_009103	20133.0	Mm.197486	NM_009103	ENSMUSG00000030978	Rrm1	RnrM1	ribonucleotide reductase M1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-72547619-2	chr8	72547519	72547719	+	979.900024	f1_balb.idr|f1_c57bl6.idr	intron (NM_027485, intron 1 of 2)	CpG	691.0	NM_027485	70625.0	Mm.235885	NM_027485	ENSMUSG00000045248	Med26	5730493L18Rik|AI414941|AW495270|Crsp7	mediator complex subunit 26	protein-coding	1.90422169112102	0.826338744593801	1.38219191713572	1.338255348138	1.27380886060458	2.03604617279767	0.813058238636599	0.798123258400599	-0.233084901041529	0.86757960406106	0.998431161219273
Merged-chr15-10896542-2	chr15	10896442	10896642	+	550.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55790.0	NM_030888	81799.0	Mm.280158	NM_030888	ENSMUSG00000058914	C1qtnf3	2310005P21Rik|CORS-26|CORS26|CTRP3|Corcs|Cors	C1q and tumor necrosis factor related protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-69854626-2	chr16	69854526	69854726	+	742.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17D|LTR|ERVK	9118.0	NM_173069	224318.0	Mm.212743	NM_173069	ENSMUSG00000063163	Speer2	SPEER-2	spermatogenesis associated glutamate (E)-rich protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-43892573-1	chr5	43892473	43892673	+	610.0	f0_balb.idr	intron (NM_007646, intron 1 of 7)	intron (NM_007646, intron 1 of 7)	23764.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127018076-2	chr7	127017976	127018176	+	588.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030240)	promoter-TSS (NM_030240)	-724.0	NM_030240	67278.0	Mm.345385	NM_030240	ENSMUSG00000107068	Pagr1a	2900092E17Rik|C77040|PA1|PAGR1	PAXIP1 associated glutamate rich protein 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127560287-2	chr10	127560186	127560386	+	892.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 43 of 88)	intron (NM_008512, intron 43 of 88)	-25727.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	1.32078784469864	1.65217087094604	2.33589284323699	2.08002820524263	1.88554487973731	2.23716236101257	1.17869284955199	2.09108256747218	-0.00160105499614892	0.998798006126584	0.999479715059607
Merged-chr6-33835423-4	chr6	33835316	33835516	+	991.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009148, intron 12 of 17)	intron (NM_009148, intron 12 of 17)	-194032.0	NM_028886	74354.0	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-106475649-2	chr9	106475563	106475763	+	669.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_145619, intron 2 of 10)	B1_Mus1|SINE|Alu	1286.0	NM_001311150	235587.0	Mm.273659	NM_145619	ENSMUSG00000023249	Parp3	A930002C11Rik|AW990611|Adprt3|Adprtl3|PARP-3|pADPRT-3	poly (ADP-ribose) polymerase family, member 3	protein-coding	1.36941666369739	2.21319612433885	1.14672806455878	1.29588537617129	1.38117682815944	1.94809165697397	0.923913233308819	1.3024630405376	-0.45197619241199	0.708668781913058	0.998431161219273
Merged-chr17-63893794-2	chr17	63893694	63893894	+	673.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286415, intron 1 of 17)	L1MB7|LINE|L1	15728.0	NM_001286415	14158.0	Mm.23039	NM_008000	ENSMUSG00000000127	Fer	AV082135|C330004K01Rik|Fert|Fert2	fer (fms/fps related) protein kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-19823687-3	chr11	19823549	19823749	+	836.099976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-100793.0	NM_033523	114716.0	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding	-1.24570524860965	-1.21974837619208	-1.06906602633779	-1.23837514350152	-0.977366292381943	-1.21753226100793	-1.0667509813706	-1.23687149138725	1.20212182507831	0.698995788524158	1
Merged-chr13-37322947-4	chr13	37322866	37323066	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22379.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-43511735-4	chr19	43511641	43511841	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010324, intron 2 of 8)	intron (NM_010324, intron 2 of 8)	12864.0	NM_010324	14718.0	Mm.19039	NM_010324	ENSMUSG00000025190	Got1	AI789014|Got-1|cAspAT|cCAT	glutamic-oxaloacetic transaminase 1, soluble	protein-coding	6.17716741379161	5.96398105284478	6.38959013043999	6.49947352526379	7.14579150139213	6.36883578742024	6.25664159946654	6.81475041150125	0.45860320008257	0.0523336273045143	0.334910861389138
Merged-chr3-59201540-3	chr3	59201440	59201640	+	653.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177855, intron 15 of 43)	intron (NM_177855, intron 15 of 43)	-6436.0	NM_001302203	84111.0	Mm.60267	NM_032399	ENSMUSG00000051431	Gpr87	-	G protein-coupled receptor 87	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-5287941-2	chr10	5287841	5288041	+	629.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347711, intron 55 of 145)	intron (NM_001347711, intron 55 of 145)	-93234.0	NM_001079686	64009.0	Mm.331626	NM_022027	ENSMUSG00000096054	Syne1	8B|A330049M09Rik|BE692247|C130039F11Rik|CPG2|KASH1|Myne1|mKIAA1756|myne-1	spectrin repeat containing, nuclear envelope 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-3461020-4	chr5	3460947	3461147	+	847.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 4 of 7)	intron (NM_009873, intron 4 of 7)	-82786.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-98355462-4	chr7	98355359	98355559	+	920.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168541, intron 2 of 3)	intron (NM_001168541, intron 2 of 3)	5829.0	NM_001168540	244152.0	Mm.25317	NM_001024619	ENSMUSG00000049580	Tsku	9530051K01Rik|E2ig4|Lrrc54|Tsk	tsukushi, small leucine rich proteoglycan	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-75591719-4	chr10	75591620	75591820	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359425, intron 1 of 7)	intron (NM_001359425, intron 1 of 7)	2339.0	NR_153110	23887.0	Mm.257927	NM_011820	ENSMUSG00000006344	Ggt5	AI551243|GGL|GGT-REL|Ggtla1	gamma-glutamyltransferase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-170509621-2	chr2	170509521	170509721	+	812.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_040367, intron 1 of 2)	intron (NR_040367, intron 1 of 2)	-1609.0	NM_001110152	109054.0	Mm.28808	NM_001013369	ENSMUSG00000052033	Pfdn4	0610025M10Rik|1810063B06Rik|C-1|C1|Pfd4	prefoldin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-103249706-4	chr11	103249619	103249819	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016896, intron 1 of 15)	intron (NM_016896, intron 1 of 15)	17682.0	NM_016896	53859.0	Mm.158981	NM_016896	ENSMUSG00000020941	Map3k14	Nik|aly	mitogen-activated protein kinase kinase kinase 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-103272168-4	chr11	103272103	103272303	+	775.020813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4802.0	NM_016896	53859.0	Mm.158981	NM_016896	ENSMUSG00000020941	Map3k14	Nik|aly	mitogen-activated protein kinase kinase kinase 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-10869183-7	chr15	10869050	10869250	+	969.816345	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40099.0	NR_040357	100502601.0	Mm.399434	NR_040357		Gm19276	-	predicted gene, 19276	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-162570579-4	chr1	162570487	162570687	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347125)	promoter-TSS (NM_001347125)	72.0	NM_001356526	53330.0	Mm.10699	NM_016796	ENSMUSG00000026696	Vamp4	D1Ertd147e|Vamp-4	vesicle-associated membrane protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-34778277-2	chr18	34778177	34778377	+	865.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081256, intron 1 of 23)	intron (NM_001081256, intron 1 of 23)	1269.0	NM_001081256	277250.0	Mm.277906	NM_029518	ENSMUSG00000038773	Kdm3b	5830462I21Rik|JHDM2B|Jmjd1b|mKIAA1082	KDM3B lysine (K)-specific demethylase 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-13549044-2	chr14	13548944	13549144	+	733.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163032, intron 2 of 4)	intron (NM_001163032, intron 2 of 4)	95086.0	NM_001163032	72003.0	Mm.317515	NM_028052	ENSMUSG00000056296	Synpr	1500003F20Rik|SPO	synaptoporin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76625207-2	chr15	76625107	76625307	+	663.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025842, intron 1 of 9)	intron (NM_025842, intron 1 of 9)	877.0	NM_025842	66914.0	Mm.30028	NM_025842	ENSMUSG00000115987	Vps28	1110014J03Rik|CIIA|D730005C08Rik	vacuolar protein sorting 28	protein-coding	0.23284035877074	0.951396410243773	0.251537703057785	0.852043507215009	0.234598255411122	0.262466557348195	0.253517106276387	1.234026602999	-0.123489717369253	0.950880366902249	1
Merged-chr6-37143880-5	chr6	37143817	37144017	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347104, intron 2 of 32)	intron (NM_001347104, intron 2 of 32)	156059.0	NM_001081206	320127.0	Mm.119469	NM_001081206	ENSMUSG00000038665	Dgki	6430604M11Rik|C130010K08Rik	diacylglycerol kinase, iota	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-61067409-2	chr18	61067309	61067509	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008809, intron 8 of 22)	L2a|LINE|L2	22259.0	NM_008809	18596.0	Mm.4146	NM_008809	ENSMUSG00000024620	Pdgfrb	AI528809|CD140b|PDGFR-1|Pdgfr	platelet derived growth factor receptor, beta polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-113662093-4	chr6	113662035	113662235	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 2 of 11)	intron (NM_001113553, intron 2 of 11)	23668.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-23888728-2	chr18	23888628	23888828	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162941, intron 7 of 7)	intron (NM_001162941, intron 7 of 7)	-65960.0	NM_027007	69256.0	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-152962335-4	chr2	152962222	152962422	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001083618)	promoter-TSS (NM_001083618)	-163.0	NM_029064	74711.0	Mm.44746	NM_029064	ENSMUSG00000074673	Ttll9	1700016F23Rik|4930509O20Rik|AW046572	tubulin tyrosine ligase-like family, member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78520289-1	chr15	78520189	78520389	+	666.0	f1_c57bl6.idr	Intergenic	Intergenic	9362.0	NM_001204153	72709.0	Mm.34776	NM_028331	ENSMUSG00000022440	C1qtnf6	2810036M19Rik|CTRP6	C1q and tumor necrosis factor related protein 6	protein-coding	0.840835772345478	0.506741509919617	1.20941201696745	0.495419774025176	0.849430480337596	0.508192767262782	0.501741749978104	1.17484790985076	-0.057218111114457	0.974415204470545	1
Merged-chr7-118118585-4	chr7	118118498	118118698	+	958.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_019419)	TTS (NM_019419)	-2451.0	NM_170669	267019.0	Mm.288212	NM_170669	ENSMUSG00000008683	Rps15a	A630031B11Rik	ribosomal protein S15A	protein-coding	2.87037603922452	3.50312066497375	3.11395728014834	3.51664607477825	2.894583854705	3.52792596367066	3.13820145558101	3.5338254929326	0.0367167579833468	0.949854187838601	0.998431161219273
Merged-chr2-176708452-2	chr2	176708352	176708552	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001099327)	promoter-TSS (NM_001099327)	99.0	NM_001099327	100043387.0	Mm.444048	NM_001099327	ENSMUSG00000078878	Gm14305	-	predicted gene 14305	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35269282-1	chr17	35269182	35269382	+	1000.0	f1_c57bl6.idr	Intergenic	Intergenic	6159.0	NM_001267808	14980.0	Mm.439675	NM_001267808		H2-L	H-2L	histocompatibility 2, D region locus L	protein-coding	1.13496528259962	0.502083802371736	0.795178726860905	0.983150467725899	0.928967013154206	0.503463418628783	0.660632993529921	0.492146586735646	-1.36056629769281	0.424122788677466	1
Merged-chr12-26415282-4	chr12	26415197	26415397	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081977)	promoter-TSS (NM_001081977)	-35.0	NM_080563	108089.0	Mm.214932	NM_080563	ENSMUSG00000020642	Rnf144a	Rnf144|UIP4|Ubce7ip4	ring finger protein 144A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-74752975-4	chr15	74752876	74753076	+	837.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011838)	promoter-TSS (NM_011838)	3.0	NM_011838	23936.0	Mm.257067	NM_011838	ENSMUSG00000022594	Lynx1	AI838844|SLURP-2	Ly6/neurotoxin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-53906316-4	chr19	53906242	53906442	+	889.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168491, intron 1 of 11)	intron (NM_001168491, intron 1 of 11)	2991.0	NM_001168491	18569.0	Mm.1605	NM_011050	ENSMUSG00000024975	Pdcd4	D19Ucla1|Ma3|Tis	programmed cell death 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-74362078-4	chr1	74361989	74362189	+	993.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033345)	promoter-TSS (NM_001033345)	-19.0	NM_001033345	241112.0	Mm.310460	NM_001033345	ENSMUSG00000073650	Catip	Gm216	ciliogenesis associated TTC17 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-26065265-1	chr16	26065165	26065365	+	618.0	f0_balb.idr	intron (NM_173379, intron 1 of 14)	intron (NM_173379, intron 1 of 14)	40519.0	NM_173379	210530.0	Mm.326869	NM_173379	ENSMUSG00000038168	P3h2	4832416N06|AW553532|Leprel1|Mlat4	prolyl 3-hydroxylase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-25216217-2	chr12	25216117	25216317	+	912.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	87043.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-131920366-4	chr4	131920330	131920530	+	956.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_102393)	promoter-TSS (NR_102393)	-401.0	NR_102393	545681.0	Mm.2478	NR_102393	ENSMUSG00000085667	Gm12992	-	predicted gene 12992	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-74533198-2	chr11	74533098	74533298	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001015046, intron 2 of 24)	intron (NM_001015046, intron 2 of 24)	56960.0	NM_001015046	380711.0	Mm.425690	NM_001015046	ENSMUSG00000038807	Rap1gap2	AU067654|Garnl4|Gm1561|mKIAA1039	RAP1 GTPase activating protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31165173-2	chr14	31165073	31165273	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_138672, intron 1 of 68)	intron (NM_138672, intron 1 of 68)	3468.0	NM_138672	192187.0	Mm.220821	NM_138672	ENSMUSG00000042286	Stab1	FEEL-1|FELE-1|MFEEL-1|MS-1|STAB-1|mKIAA0246	stabilin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52072396-2	chr13	52072296	52072496	+	772.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24345.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-79347436-4	chr17	79347350	79347550	+	672.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026514, intron 1 of 1)	intron (NM_026514, intron 1 of 1)	7641.0	NM_026514	260409.0	Mm.140601	NM_026514	ENSMUSG00000036533	Cdc42ep3	3200001F04Rik|AA986861|Borg2|Cep3|UB1	CDC42 effector protein (Rho GTPase binding) 3	protein-coding	2.014309389647	1.22704903299437	2.18940524546691	2.01590114841578	2.36735021663057	1.23280263408495	2.49235755667736	1.76339106684735	0.393984957782892	0.712718351109719	0.998431161219273
Merged-chr10-87862210-4	chr10	87862113	87862313	+	774.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111274, intron 1 of 4)	intron (NM_001111274, intron 1 of 4)	1102.0	NM_001111276	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-19856282-1	chr4	19856182	19856382	+	825.5	f0_balb.idr	Intergenic	Intergenic	37555.0	NM_028746	74087.0	Mm.173833	NM_028746	ENSMUSG00000041052	Slc7a13	0610009O04Rik|AGT-1|AGT1|XAT2	solute carrier family 7, (cationic amino acid transporter, y+ system) member 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-12655275-4	chr18	12655173	12655373	+	777.641663	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028341, intron 1 of 13)	intron (NM_028341, intron 1 of 13)	11740.0	NM_028341	72747.0	Mm.52526	NM_028341	ENSMUSG00000024424	Ttc39c	1700008N02Rik|2810439F02Rik	tetratricopeptide repeat domain 39C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-106627444-4	chr1	106627330	106627530	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009741, intron 1 of 1)	intron (NM_009741, intron 1 of 1)	-80799.0	NR_106164	102466254.0		NR_106164	ENSMUSG00000098344	Mir3473f	Gm27846|mmu-mir-3473f	microRNA 3473f	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-116122443-2	chr3	116122343	116122543	+	725.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011693, intron 4 of 8)	intron (NM_011693, intron 4 of 8)	7245.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	-1.06932346315282	-1.04545378193536	-0.220844647149311	-1.06494782147003	-1.06867040657128	-1.04264807175102	-1.05547001227371	-1.06448932552894	-3.08190232315036	0.346744811462451	1
Merged-chr17-35166525-2	chr17	35166426	35166626	+	968.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-1649.0	NM_020027	53761.0	Mm.272462	NM_020027	ENSMUSG00000024393	Prrc2a	3110039B05Rik|Bat-2|Bat2|D17H6S51E|G2|Wbp12|mKIAA4178	proline-rich coiled-coil 2A	protein-coding	-0.131837231756109	-0.11471024486141	-0.120300133353417	0.432861671988016	-0.130762334418834	0.0935854129970645	0.686468958309504	-0.12386998113368	1.00151001686768	0.66486152099846	1
Merged-chr19-5018944-4	chr19	5018836	5019036	+	848.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5070.0	NM_007854	13340.0	Mm.4930	NM_007854	ENSMUSG00000024891	Slc29a2	Der12|Ent2|Hnp36	solute carrier family 29 (nucleoside transporters), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-122950399-4	chr9	122950307	122950507	+	822.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010620)	promoter-TSS (NM_010620)	593.0	NM_025419	66202.0	Mm.268307	NM_025419	ENSMUSG00000032551	1110059G10Rik	-	RIKEN cDNA 1110059G10 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-120836676-3	chr6	120836569	120836769	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153516, intron 1 of 6)	intron (NM_153516, intron 1 of 6)	439.0	NM_153516	94044.0	Mm.27990	NM_153516	ENSMUSG00000009112	Bcl2l13	BCL-RAMBO|E430016C20Rik|Mil-1|Mil1	BCL2-like 13 (apoptosis facilitator)	protein-coding	-0.629695889278644	-0.618014505339431	-0.283408291070965	-0.624789472280536	-0.628965594294398	-0.617153384225152	-0.620993757313548	0.122441156121918	1.45616545914972	0.609931116808979	1
Merged-chr18-76254826-3	chr18	76254616	76254816	+	662.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010754, intron 1 of 10)	intron (NM_010754, intron 1 of 10)	-6405.0	NM_001252481	17126.0	Mm.152699	NM_010754	ENSMUSG00000024563	Smad2	7120426M23Rik|Madh2|Madr2|Smad-2|mMad2	SMAD family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117885546-4	chr10	117885453	117885653	+	853.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39579.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-42780926-1	chr10	42780826	42781026	+	729.5	f0_balb.idr	intron (NM_001359285, intron 1 of 19)	MLT1D|LTR|ERVL-MaLR	19430.0	NM_153055	140740.0	Mm.214344	NM_153055	ENSMUSG00000019802	Sec63	5730478J10Rik|AI649014|AW319215	SEC63-like (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-13134271-2	chr15	13134171	13134371	+	893.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007666, intron 1 of 11)	intron (NM_007666, intron 1 of 11)	39404.0	NM_007666	12563.0	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-34527519-4	chr19	34527410	34527610	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021460)	promoter-TSS (NM_021460)	-36.0	NM_021460	16889.0	Mm.157545	NM_021460	ENSMUSG00000024781	Lipa	AA960673|Lal|Lip-1|Lip1	lysosomal acid lipase A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81378651-4	chr10	81378558	81378758	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019757)	promoter-TSS (NM_019757)	-288.0	NM_019757	56371.0	Mm.24202	NM_019757	ENSMUSG00000020235	Fzr1	AW108046|Cdh1|FZR|FZR2|Fyr|HCDH|HCDH1	fizzy and cell division cycle 20 related 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16397876-2	chr7	16397776	16397976	+	681.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TTTC)n|Simple_repeat|Simple_repeat	-3320.0	NM_198631	330474.0	Mm.333594	NM_198631	ENSMUSG00000059273	Zc3h4	Bwq1|Gm768|Kiaa1064-hp|mKIAA1064	zinc finger CCCH-type containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3834160-2	chr19	3834060	3834260	+	786.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17613.0	NM_001271496	12660.0	Mm.225505	NM_013490	ENSMUSG00000024843	Chka	CK|CK/EK-alpha|Chetk-alpha|Chk|ChoK|EK|EtnK-alpha	choline kinase alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-102742768-4	chr15	102742667	102742867	+	955.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4142.0	NR_104334	102216269.0		NR_104334		Gm38436	Cistr|Cistr-act	predicted gene, 38436	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-55308714-4	chr15	55308757	55308957	+	855.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181277, intron 1 of 47)	intron (NM_181277, intron 1 of 47)	1107.0	NM_181277	12818.0	Mm.297859	NM_181277	ENSMUSG00000022371	Col14a1	5730412L22Rik|AW108078	collagen, type XIV, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-135188342-4	chr6	135188243	135188443	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040296)	promoter-TSS (NR_040296)	-137.0	NR_040296	100502888.0	Mm.437844	NR_040296	ENSMUSG00000108239	Gm19434	-	predicted gene, 19434	ncRNA	6.84555117254509	5.89948645876442	6.23941783541398	6.18642469678439	5.81739144706936	6.3529932525245	6.32973755589011	6.3228385112785	-0.140550128290189	0.571391880948629	0.963119869194766
Merged-chr16-90190333-2	chr16	90190235	90190435	+	597.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30407.0	NM_011434	20655.0	Mm.276325	NM_011434	ENSMUSG00000022982	Sod1	B430204E11Rik|Cu/Zn-SOD|CuZnSOD|Ipo-1|Ipo1|SODC|Sod-1	superoxide dismutase 1, soluble	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-24876756-4	chr5	24876678	24876878	+	938.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145401, intron 9 of 15)	intron (NM_145401, intron 9 of 15)	-25791.0	NR_040684	71161.0	Mm.443533	NR_040684	ENSMUSG00000086446	Prkag2os1	4933426D04Rik	protein kinase, AMP-activated, gamma 2 non-catalytic subunit, opposite strand 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-102009816-4	chr2	102009693	102009893	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178886, intron 4 of 5)	intron (NM_178886, intron 4 of 5)	123531.0	NM_029635	76501.0	Mm.330424	NM_029635	ENSMUSG00000027163	Commd9	1810029F08Rik|AA409293	COMM domain containing 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124804351-2	chr6	124804251	124804451	+	723.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-4310.0	NM_001306051	14794.0	Mm.261906	NM_013539	ENSMUSG00000038451	Spsb2	AI461677|C9|Grcc9|SSB2	splA/ryanodine receptor domain and SOCS box containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-113014517-8	chr12	113014438	113014638	+	927.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291444)	promoter-TSS (NM_001291444)	30.0	NM_001291444	217893.0	Mm.35754	NM_198165	ENSMUSG00000021143	Pacs2	6720425G15Rik|AW208651|AW489976|E230011J22|Pacs1l|mKIAA0602	phosphofurin acidic cluster sorting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-51221302-4	chr17	51221215	51221415	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41963.0	NM_001285991	72238.0	Mm.120650	NM_028162	ENSMUSG00000023923	Tbc1d5	1600014N05Rik	TBC1 domain family, member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-37482816-4	chr19	37482693	37482893	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	17539.0	NR_131009	78640.0	Mm.234265	NR_131008		1700122C19Rik	-	RIKEN cDNA 1700122C19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-40906939-2	chr14	40906839	40907039	+	695.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001316748, exon 9 of 9)	3' UTR (NM_001316748, exon 9 of 9)	-13974.0	NM_177816	328381.0	Mm.235694	NM_177816	ENSMUSG00000037833	Sh2d4b	A430109M18Rik|D030001E08	SH2 domain containing 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-57703909-3	chr6	57703827	57704027	+	797.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133737, intron 1 of 8)	Lx8|LINE|L1	1472.0	NM_133737	71835.0	Mm.274904	NM_133737	ENSMUSG00000062190	Lancl2	1700003F10Rik	LanC (bacterial lantibiotic synthetase component C)-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115047237-3	chr11	115047163	115047363	+	848.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199201, intron 1 of 3).2	B4A|SINE|B4	1032.0	NM_199201	382551.0	Mm.424732	NM_199201	ENSMUSG00000069607	Cd300ld3	AY457049|Cd300lh|Clm3|Lmir7|clm-3	CD300 molecule like family member D3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-57763995-2	chr9	57763895	57764095	+	997.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007713, intron 1 of 12)	intron (NM_007713, intron 1 of 12)	1865.0	NM_007713	102414.0	Mm.25720	NM_007713	ENSMUSG00000032316	Clk3	AI256811	CDC-like kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165857717-4	chr2	165857650	165857850	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252587, intron 2 of 11)	intron (NM_001252587, intron 2 of 11)	423.0	NM_001252585	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-53888048-2	chr1	53887868	53888068	+	635.5	f0_balb.idr|f1_c57bl6.idr	intron (NM_001001883, intron 15 of 28)	intron (NM_001001883, intron 15 of 28)	38544.0	NR_106149	102465783.0		NR_106149	ENSMUSG00000098443	Mir7681	Gm27806|mmu-mir-7681	microRNA 7681	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-93193603-4	chr5	93193503	93193703	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017367, intron 2 of 6)	intron (NM_017367, intron 2 of 6)	12892.0	NM_017367	12453.0	Mm.250419	NM_017367	ENSMUSG00000063015	Ccni	-	cyclin I	protein-coding	3.10948115667993	2.33010808660127	2.67292863715176	2.98232007745028	3.13398498615625	2.34672172554913	2.42955675845583	2.99714823003809	-0.0619148660832384	0.931067363457695	0.998431161219273
Merged-chr18-31920826-2	chr18	31920726	31920926	+	585.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-8923.0	NM_026006	67158.0	Mm.31537	NM_026006	ENSMUSG00000044982	Sft2d3	2610206C24Rik|AI847965|AW046173	SFT2 domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-8712284-2	chr15	8712184	8712384	+	804.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1477.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16739150-2	chr7	16739050	16739250	+	982.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198613, intron 1 of 4)	intron (NM_198613, intron 1 of 4)	706.0	NM_198613	232910.0	Mm.333597	NM_198613	ENSMUSG00000008036	Ap2s1	AI043088	adaptor-related protein complex 2, sigma 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-38383566-2	chr15	38383466	38383666	+	988.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-82855.0	NM_001289471	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-56602081-2	chr19	56601981	56602181	+	630.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53820.0	NM_025811	66866.0	Mm.46346	NM_025811	ENSMUSG00000025078	Nhlrc2	1200003G01Rik|AI835049|AV002846|AW496455	NHL repeat containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-83269841-4	chr4	83269751	83269951	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027238, intron 3 of 19)	B4|SINE|B4	54338.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-20073167-2	chr2	20073067	20073267	+	672.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-216746.0	NM_001081006	208618.0	Mm.237935	NM_029895	ENSMUSG00000036617	Etl4	6620402G01Rik|9430077C05Rik|BC026657|E330027G05Rik|Etl-4|Skt	enhancer trap locus 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-59835336-4	chr13	59835249	59835449	+	871.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12202.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	2.94232522480376	2.53176629825198	1.97379313486775	1.92120770568128	3.02833370333833	2.9931500232032	2.58956003995403	2.39087093568926	0.718231184119264	0.359262910829304	0.856306289008338
Merged-chr9-47893161-1	chr9	47893061	47893261	+	927.0	f0_balb.idr	Intergenic	MLT1J1|LTR|ERVL-MaLR	-74953.0	NR_046048	100038460.0	Mm.447649	NR_046048		Gm10677	-	predicted gene 10677	ncRNA	-1.8441302108003	-1.81350723920635	-1.82276787857624	-1.83037484348242	-1.84198053481629	-1.6657882855277	-1.67495933831482	-1.8290132004012	1.61115487639342	0.646990671328599	1
Merged-chr12-16830054-1	chr12	16829954	16830154	+	695.75	f0_balb.idr	Intergenic	Intergenic	19089.0	NM_033270	50496.0	Mm.23296	NM_033270	ENSMUSG00000057469	E2f6	AI462434|E2F6a|E2F6b|EMA	E2F transcription factor 6	protein-coding	1.80777702674273	1.36911442949027	2.34180445311512	2.37730904791864	2.27490037930718	2.44137126866052	1.9653573823506	2.64729250821192	0.750374667104642	0.414985634503368	0.896676881011847
Merged-chr1-24695870-4	chr1	24695845	24696045	+	900.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026719, intron 3 of 15)	intron (NM_026719, intron 3 of 15)	17027.0	NM_001310483	68421.0	Mm.336563	NM_026719	ENSMUSG00000073725	Lmbrd1	0910001K20Rik|AV347960	LMBR1 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-89443926-4	chr10	89443824	89444024	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001284344)	promoter-TSS (NM_001284344)	43.0	NM_001284344	237436.0	Mm.11982	NM_001033331	ENSMUSG00000074802	Gas2l3	8430435B07Rik|Gm240	growth arrest-specific 2 like 3	protein-coding	2.43640234059807	3.60843724006508	2.37584652029171	2.14451732830559	3.06910938022758	3.19269893360595	1.80440319043313	3.07371486886185	0.191803988114745	0.80743332537945	0.998431161219273
Merged-chr16-20629839-2	chr16	20629739	20629939	+	587.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177942)	promoter-TSS (NM_177942)	-12.0	NM_177942	107522.0	Mm.263319	NM_139293	ENSMUSG00000022842	Ece2	1810009K13Rik|6330509A19Rik|9630025D12Rik|BB127715|Ece-2|Eef1akmt4-Ece2	endothelin converting enzyme 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-38035621-2	chr5	38035521	38035721	+	630.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3609.0	NM_001289536	71116.0	Mm.18959	NM_026959	ENSMUSG00000029125	Stx18	1810035L21Rik|4933425D03Rik|AU041562	syntaxin 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-53265714-4	chr18	53265675	53265875	+	914.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029394, intron 1 of 6)	B1_Mur2|SINE|Alu	20113.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-34371352-3	chr2	34371284	34371484	+	836.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290576, intron 1 of 7)	CpG	661.0	NM_001290576	18516.0	Mm.239941	NM_016768	ENSMUSG00000038718	Pbx3	-	pre B cell leukemia homeobox 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118180421-2	chr11	118180321	118180521	+	850.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001112700, intron 9 of 12)	intron (NM_001112700, intron 9 of 12)	32321.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-7100744-4	chr1	7100646	7100846	+	962.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183028, intron 1 of 5)	intron (NM_183028, intron 1 of 5)	11826.0	NM_183028	319263.0	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-89101208-2	chr11	89101106	89101306	+	674.233337	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27365.0	NM_001033266	217071.0	Mm.342127	NM_001033266	ENSMUSG00000072553	Gm525	-	predicted gene 525	protein-coding	0.672758718565618	0.63130563505105	0.347306805179066	0.191241553978055	0.519852510197308	0.20010019579543	0.351609455829252	0.191833192221106	-1.23614366348662	0.519710118533892	1
Merged-chr17-50274216-2	chr17	50274116	50274316	+	939.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19404.0	NM_010021	13164.0	Mm.280641	NM_010021	ENSMUSG00000010592	Dazl	Daz-like|Dazh|Dazl1|Dazla|Tpx-2|Tpx2	deleted in azoospermia-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-37998306-3	chr13	37998210	37998410	+	763.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4102.0	NM_001360842	107513.0	Mm.426670	NM_025965	ENSMUSG00000021427	Ssr1	2510001K09Rik|6330400D04|AI159733|AI452176|SSR|TRAPA	signal sequence receptor, alpha	protein-coding	1.30128620340223	1.76032071073039	2.11262597732725	2.12697557063893	1.45008706994583	1.01698414221077	1.22638185027352	1.3726394399902	-2.02690215479235	0.0817373821133058	0.436895653665923
Merged-chr3-9725569-8	chr3	9725429	9725629	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053182, intron 2 of 7)	intron (NM_053182, intron 2 of 7)	108150.0	NM_053182	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-13623190-2	chr8	13623090	13623290	+	664.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 2 of 23)	intron (NM_009025, intron 2 of 23)	54397.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-86952303-2	chr9	86952203	86952403	+	887.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63234.0	NM_001037907	382089.0	Mm.92244	NM_001037907	ENSMUSG00000047897	Ripply2	C030002E08Rik|Gm1122	ripply transcriptional repressor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-170554684-2	chr1	170554584	170554784	+	579.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001109985, intron 1 of 9)	MLT2C1|LTR|ERVL	2426.0	NM_027528	70729.0	Mm.409310	NM_027528	ENSMUSG00000038473	Nos1ap	6330408P19Rik|Capon	nitric oxide synthase 1 (neuronal) adaptor protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53521714-4	chr4	53521592	53521792	+	977.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133891, intron 4 of 15)	L1MB3|LINE|L1	81279.0	NM_133891	100434.0	Mm.482207	NM_133891	ENSMUSG00000028412	Slc44a1	2210409B22Rik|4833416H08Rik|AW547365|CHTL1|CTL1|Cdw92	solute carrier family 44, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35811721-2	chr17	35811676	35811876	+	728.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-9937.0	NM_133662	15937.0	Mm.25613	NM_133662	ENSMUSG00000003541	Ier3	AI663993|IEX-1|cI-3|gly96	immediate early response 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16299801-4	chr7	16299694	16299894	+	963.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-9789.0	NM_133234	170770.0	Mm.7660	NM_133234	ENSMUSG00000002083	Bbc3	PUMA|PUMA/JFY1	BCL2 binding component 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-38429288-3	chr19	38429166	38429366	+	702.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33286.0	NM_175507	240660.0	Mm.262085	NM_175507	ENSMUSG00000044026	Slc35g1	AA590464|D330039I19Rik|Tmem20	solute carrier family 35, member G1	protein-coding	3.27033800229363	2.55840838368708	3.24761494147995	1.82451684575214	3.66176841009301	2.40346460512709	3.18765365773085	3.25108879940887	0.600485106443042	0.405814479127242	0.89095290927429
Merged-chr4-123139610-4	chr4	123139516	123139716	+	995.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019489, intron 1 of 9)	intron (NM_019489, intron 1 of 9)	325.0	NM_019489	56031.0	Mm.126873	NM_019489	ENSMUSG00000028651	Ppie	2010010D16Rik|Cyp33	peptidylprolyl isomerase E (cyclophilin E)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-24804581-2	chr13	24804481	24804681	+	582.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_024473, intron 1 of 4)	intron (NM_024473, intron 1 of 4)	2924.0	NM_024473	79555.0	Mm.266668	NM_024473	ENSMUSG00000019132	BC005537	8030460C05Rik|C78201	cDNA sequence BC005537	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171377312-4	chr1	171377236	171377436	+	951.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122680, intron 1 of 7)	intron (NM_001122680, intron 1 of 7)	7163.0	NM_001122680	71740.0	Mm.263414	NM_027893	ENSMUSG00000006411	Nectin4	1200017F15Rik|Prr4|Pvrl4	nectin cell adhesion molecule 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-81155547-3	chr13	81155455	81155655	+	835.0888669999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 86 of 89)	intron (NM_054053, intron 86 of 89)	191481.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-109821872-1	chr13	109821772	109821972	+	721.5	f0_balb.idr	intron (NM_011056, intron 7 of 16)	intron (NM_011056, intron 7 of 16)	-81937.0	NR_035442	100316683.0		NR_035442	ENSMUSG00000084651	Mir1904	Mirn1904|mmu-mir-1904	microRNA 1904	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-43470358-3	chr11	43470256	43470456	+	775.272217	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3950.0	NM_026979	69183.0	Mm.390374	NM_026979	ENSMUSG00000046491	C1qtnf2	1810033K05Rik|CTRP2	C1q and tumor necrosis factor related protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-126982000-2	chr10	126981900	126982100	+	873.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113470, intron 1 of 7)	intron (NM_001113470, intron 1 of 7)	3283.0	NM_001113470	52468.0	Mm.29490	NM_146012	ENSMUSG00000078429	Ctdsp2	AI586070|D10Ertd73e|OS-4|OS4|SCP2	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-75933499-1	chr16	75933399	75933599	+	641.5	f0_balb.idr	Intergenic	Intergenic	-24233.0	NM_023380	67742.0	Mm.131406	NM_023380	ENSMUSG00000022876	Samsn1	4930571B16Rik|930571B16Rik|Hacs1|SLy2	SAM domain, SH3 domain and nuclear localization signals, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-168541390-4	chr2	168541198	168541398	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037177, intron 3 of 6)	intron (NM_001037177, intron 3 of 6)	49067.0	NM_001291178	18019.0	Mm.116802	NM_010899	ENSMUSG00000027544	Nfatc2	AI607462|NF-ATc2|NF-ATp|NFAT1|NFAT1-D|Nfatp	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64923149-4	chr5	64923048	64923248	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9551.0	NM_030682	21897.0	Mm.273024	NM_030682	ENSMUSG00000044827	Tlr1	-	toll-like receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72442696-2	chr6	72442595	72442795	+	650.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3137.0	NM_145569	232087.0	Mm.29815	NM_145569	ENSMUSG00000053907	Mat2a	D630045P18Rik	methionine adenosyltransferase II, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-30761998-2	chr13	30761898	30762098	+	826.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347508, intron 8 of 8)	intron (NM_001347508, intron 8 of 8)	12765.0	NM_013674	16364.0	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-59310853-4	chr10	59310740	59310940	+	881.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12456.0	NM_001316371	18451.0	Mm.2212	NM_011030	ENSMUSG00000019916	P4ha1	AL022634|P4ha	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-30875160-3	chr3	30875069	30875269	+	768.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286994, intron 1 of 3)	Lx9|LINE|L1	19219.0	NM_001286994	71862.0	Mm.272019	NM_027965	ENSMUSG00000037661	Gpr160	1700025D19Rik|GPCR150	G protein-coupled receptor 160	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-53400537-4	chr15	53400413	53400613	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	-54330.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34264869-7	chr17	34264813	34265013	+	948.9285890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_207105, exon 2 of 6)	exon (NM_207105, exon 2 of 6)	1686.0	NM_207105	14961.0	Mm.254067	NM_207105	ENSMUSG00000073421	H2-Ab1	AI845868|Abeta|H-2Ab|H2-Ab|I-Abeta|IAb|Ia-2|Ia2|Rmcs1	histocompatibility 2, class II antigen A, beta 1	protein-coding	4.67731222262258	3.65320701680227	3.52437004717901	2.67418773300358	4.48300973452508	3.68118388307481	4.22097499467977	4.97284594350236	0.776037236149694	0.150706013898564	0.602589676101411
Merged-chr9-103236377-2	chr9	103236277	103236477	+	599.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6091.0	NM_133977	22041.0	Mm.37214	NM_133977	ENSMUSG00000032554	Trf	AI266983|Cd176|HP|Tf|Tfn|hpx	transferrin	protein-coding	-0.885343988398316	-0.873197811915141	-0.879568534556306	-0.464008891048743	-0.884809499207366	-0.870535133016439	-0.878945546113603	-0.458408536970068	0.0285539633070526	0.992673327504828	1
Merged-chr3-65394877-2	chr3	65394777	65394977	+	887.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2324.0	NM_026155	67437.0	Mm.232728	NM_026155	ENSMUSG00000027828	Ssr3	0610038P07Rik|AL022999|AU022074|AW553833|TRAPG	signal sequence receptor, gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-3929348-4	chr16	3929254	3929454	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029738, intron 8 of 11)	intron (NM_029738, intron 8 of 11)	20345.0	NM_029738	76779.0	Mm.458921	NM_029738	ENSMUSG00000014232	Cluap1	2310030D15Rik|2610111M03Rik	clusterin associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-75845403-4	chr13	75845323	75845523	+	883.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053108, intron 1 of 2)	intron (NM_053108, intron 1 of 2)	5537.0	NM_053108	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	0.207926903834547	0.23783364980431	1.37409694276321	0.851787490494005	0.20983953804917	0.82710606805643	0.230338988869674	0.221986422911767	-1.92487371111066	0.333677020808652	1
Merged-chr11-3137953-2	chr11	3137863	3138063	+	1000.0	f0_balb.idr|f1_balb.idr	intron (NM_030207, intron 22 of 32)	Lx9|LINE|L1	13942.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-55469353-3	chr13	55469258	55469458	+	858.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001030296, intron 1 of 2)	intron (NM_001030296, intron 1 of 2)	5091.0	NM_001030296	432763.0	Mm.315457	NM_001030296	ENSMUSG00000034686	Prr7	XM_484263	proline rich 7 (synaptic)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-29419623-4	chr19	29419517	29419717	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021396, intron 1 of 5)	L1MB7|LINE|L1	8698.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27595459-4	chr2	27595359	27595559	+	857.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	80312.0	NM_080848	140858.0	Mm.28265	NM_080848	ENSMUSG00000026917	Wdr5	2410008O07Rik|AA408785|AA960360|Big|Big-3	WD repeat domain 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-43462987-3	chr6	43462912	43463112	+	908.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045988, intron 1 of 2)	intron (NR_045988, intron 1 of 2)	20583.0	NR_045988	319812.0	Mm.446393	NR_045988		9430018G01Rik	-	RIKEN cDNA 9430018G01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117086498-2	chr11	117086398	117086598	+	720.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9150.0	NR_105853	102465258.0		NR_105853	ENSMUSG00000104740	Mir6516	mmu-mir-6516	microRNA 6516	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-32132075-4	chr12	32131986	32132186	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70807.0	NM_011158	19088.0	Mm.25594	NM_011158	ENSMUSG00000002997	Prkar2b	AI451071|AW061005|PKARIIbeta|Pkarb2|RII(beta)	protein kinase, cAMP dependent regulatory, type II beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-89033723-2	chr6	89033623	89033823	+	699.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62387.0	NR_134978	232217.0	Mm.281744	NM_175017	ENSMUSG00000055403	4933427D06Rik	-	RIKEN cDNA 4933427D06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55659597-2	chr19	55659497	55659697	+	836.099976	f1_balb.idr|f1_c57bl6.idr	intron (NR_045318, intron 2 of 3)	intron (NR_045318, intron 2 of 3)	42607.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44396897-4	chr9	44396800	44397000	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001293630)	promoter-TSS (NM_001293630)	-27.0	NM_001293631	14385.0	Mm.30087	NM_008063	ENSMUSG00000032114	Slc37a4	100043178|G6PT|G6pt1|GSD-1b|mG6PT	solute carrier family 37 (glucose-6-phosphate transporter), member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-7806788-2	chr9	7806688	7806888	+	673.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	22398.0	NR_049191	100885830.0		NR_049191	ENSMUSG00000093615	Mir5618	Gm23685|mmu-mir-5618	microRNA 5618	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-24112691-3	chr18	24112591	24112791	+	778.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172625, exon 3 of 5)	exon (NM_172625, exon 3 of 5)	9128.0	NM_172625	225280.0	Mm.258973	NM_172625	ENSMUSG00000047989	Ino80c	D030070L09Rik	INO80 complex subunit C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-51255022-3	chr14	51254901	51255101	+	916.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_053113)	TTS (NM_053113)	1111.0	NM_053113	93726.0	Mm.153688	NM_053113	ENSMUSG00000047222	Rnase2a	Ear11	ribonuclease, RNase A family, 2A (liver, eosinophil-derived neurotoxin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-74873194-2	chr17	74873094	74873294	+	764.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-132335.0	NM_019919	268977.0	Mm.269747	NM_019919	ENSMUSG00000001870	Ltbp1	9430031G15Rik|9830146M04|Ltbp-1|Ltbp1L|TGF-beta1-BP-1|Tgfb|b2b1000Clo	latent transforming growth factor beta binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-132225368-2	chr2	132225268	132225468	+	608.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	22420.0	NM_027478	70612.0	Mm.30116	NM_027478	ENSMUSG00000027341	Tmem230	5730494N06Rik|AA407821	transmembrane protein 230	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-13530731-2	chr16	13530631	13530831	+	748.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-10312.0	NR_037997	70100.0	Mm.158330	NR_037997	ENSMUSG00000099411	2310015D24Rik	-	RIKEN cDNA 2310015D24 gene	ncRNA	-1.13515423415793	-1.09102377637878	-1.26001666007083	-1.26831181349407	-1.00649283092709	-1.2477298546839	-1.25773059622276	-1.26682698499733	-0.0304197843822144	0.992343067166728	1
Merged-chr3-127780926-2	chr3	127780826	127781026	+	635.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027808)	promoter-TSS (NM_027808)	-399.0	NM_027808	71481.0	Mm.158704	NM_027808	ENSMUSG00000028028	Alpk1	8430410J10Rik|LAK	alpha-kinase 1	protein-coding	-0.0211443283984232	-0.641664752310627	-0.645034587532555	-0.647629074951804	-0.274124372481926	-0.640904061703657	-0.644292024290792	-0.647176169770092	-0.932984113643968	0.749082239155901	1
Merged-chr16-91010106-3	chr16	91009975	91010175	+	793.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001164483, exon 2 of 32)	exon (NM_001164483, exon 2 of 32)	1020.0	NM_001045515	104015.0	Mm.187079	NM_001045515	ENSMUSG00000022973	Synj1	A930006D20Rik|AA675315|mKIAA0910	synaptojanin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-60779768-4	chr15	60779580	60779780	+	897.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	-43285.0	NR_030696	320469.0	Mm.230853	NM_177166		9930014A18Rik	-	RIKEN cDNA 9930014A18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70618687-2	chr11	70618587	70618787	+	964.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009603, intron 2 of 11)	intron (NM_009603, intron 2 of 11)	507.0	NM_009603	11448.0	Mm.4980	NM_009603	ENSMUSG00000014609	Chrne	AChrepsilon|Acre|nAChRE	cholinergic receptor, nicotinic, epsilon polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-59904191-3	chr1	59904088	59904288	+	986.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8818.0	NM_001037725	72750.0	Mm.258250	NM_001037725	ENSMUSG00000041040	Fam117b	2810425F24Rik|6330416D14Rik|Als2cr13	family with sequence similarity 117, member B	protein-coding	0.917881470264825	1.40956827589139	2.06755855269421	1.47485174879636	1.41008941406539	1.73098047630869	0.960772242965409	1.92769209666519	0.0620516405184483	0.960512421945236	0.998431161219273
Merged-chr7-107045978-1	chr7	107045878	107046078	+	550.0	f1_balb.idr	Intergenic	Intergenic	9842.0	NM_147034	259036.0	Mm.377801	NM_147034	ENSMUSG00000073898	Olfr713	MOR263-1|P3	olfactory receptor 713	protein-coding	1.15134922289222	0.819951190327342	1.84370806113198	0.779135030674247	0.97723895198727	0.824940808563911	2.38854956163763	2.15740174823885	1.57513646342672	0.247468695738501	0.746888163207413
Merged-chr9-57146332-2	chr9	57146232	57146432	+	553.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_151685, intron 2 of 8)	intron (NR_151685, intron 2 of 8)	1973.0	NM_028347	72774.0	Mm.35749	NM_028347	ENSMUSG00000032298	Neil1	2810450N13Rik|NEH1|Nei1	nei endonuclease VIII-like 1 (E. coli)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-36489344-2	chr5	36489244	36489444	+	685.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4756.0	NM_025725	66717.0	Mm.42368	NM_025725	ENSMUSG00000050677	Ccdc96	4921513E08Rik	coiled-coil domain containing 96	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166116157-3	chr2	166116058	166116258	+	732.277771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252579, intron 3 of 20)	intron (NM_001252579, intron 3 of 20)	39127.0	NM_001355619	72043.0	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70622842-2	chr8	70622755	70622955	+	560.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MERVK26-int|LTR|ERVK	6011.0	NM_153074	211228.0	Mm.132939	NM_153074	ENSMUSG00000049988	Lrrc25	Mapa	leucine rich repeat containing 25	protein-coding	0.0164325869139747	0.262125565172009	-0.337245655737167	-0.340302651590825	-0.0823436853890039	-0.332375022027866	-0.336370388622845	-0.339769135949142	-1.91954571548214	0.446847376953769	1
Merged-chr7-67480379-2	chr7	67480279	67480479	+	612.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-107521.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-102051892-2	chr5	102051792	102051992	+	688.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 1 of 66)	intron (NM_172882, intron 1 of 66)	18029.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114907792-4	chr11	114907687	114907887	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17746.0	NM_170758	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-99436924-1	chr9	99436824	99437024	+	549.0	f1_c57bl6.idr	promoter-TSS (NM_008624)	promoter-TSS (NM_008624)	-212.0	NM_008624	17532.0	Mm.2045	NM_008624	ENSMUSG00000032470	Mras	2900078C09Rik|AI326250	muscle and microspikes RAS	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135165623-2	chr5	135165523	135165723	+	637.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-2749.0	NM_009745	12054.0	Mm.405834	NM_009745	ENSMUSG00000029681	Bcl7b	-	B cell CLL/lymphoma 7B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-101881044-2	chr5	101880944	101881144	+	686.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 44 of 66)	intron (NM_172882, intron 44 of 66)	115914.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132269046-2	chr4	132268946	132269146	+	945.916626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	1140.0	NR_002865	353373.0	Mm.424675	NR_002865		Rnu11	MBII-407|Mirn801|mir-801|mmu-mir-801	U11 small nuclear RNA	snRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-101614582-2	chr9	101614482	101614682	+	633.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	272388.0	NR_110509	102633035.0	Mm.411422	NR_110509	ENSMUSG00000101941	Gm28979	-	predicted gene 28979	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-73587557-3	chr12	73587457	73587657	+	699.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008856, intron 1 of 13)	intron (NM_008856, intron 1 of 13)	2761.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-103964719-2	chr2	103964619	103964819	+	643.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001142337, intron 1 of 3)	intron (NM_001142337, intron 1 of 3)	-4838.0	NM_001142336	16909.0	Mm.29266	NM_008505	ENSMUSG00000032698	Lmo2	Rbtn-2|Rbtn2|Rhom-2|Ttg2	LIM domain only 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-125311571-2	chr8	125311471	125311671	+	585.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	181262.0	NM_001081337	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	0.950658095286544	1.85007776447826	1.53347583388448	1.34574887389675	1.13838937578865	1.86493822677341	1.54560087215175	1.84045055342639	0.564085862517294	0.635627154591072	0.982417279970648
Merged-chr17-63200455-2	chr17	63200355	63200555	+	591.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_015794, intron 7 of 8)	intron (NM_015794, intron 7 of 8)	112518.0	NR_130176	414079.0	Mm.444282	NR_130176	ENSMUSG00000090565	4930405O22Rik	-	RIKEN cDNA 4930405O22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-107288121-2	chr3	107288021	107288221	+	790.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-3109.0	NM_001310705	229699.0	Mm.38384	NM_146136	ENSMUSG00000027896	Slc16a4	AW146050|MCT 5	solute carrier family 16 (monocarboxylic acid transporters), member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-8858401-4	chr10	8858300	8858500	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 1 of 19)	intron (NM_175155, intron 1 of 19)	27670.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32402903-2	chr2	32402803	32403003	+	719.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_133783)	TTS (NM_133783)	7013.0	NM_133783	96979.0	Mm.28048	NM_133783	ENSMUSG00000026820	Ptges2	0610038H10Rik|C79137|Gbf1|Mpges2|Pges2	prostaglandin E synthase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-21092900-3	chr11	21092796	21092996	+	828.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023324, intron 1 of 6)	intron (NM_023324, intron 1 of 6)	1572.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171817163-4	chr1	171817065	171817265	+	969.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22532.0	NM_001252472	12523.0	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70614625-4	chr8	70614517	70614717	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2227.0	NM_153074	211228.0	Mm.132939	NM_153074	ENSMUSG00000049988	Lrrc25	Mapa	leucine rich repeat containing 25	protein-coding	4.36258633245394	4.84195426559974	4.06726774150511	4.87081436798721	3.6418314281551	4.16612951784718	3.01203149902822	5.0174914407166	-0.523267439779065	0.289357210690795	0.794926228179246
Merged-chr1-91054296-4	chr1	91054204	91054404	+	848.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008515, intron 1 of 22)	intron (NM_008515, intron 1 of 22)	860.0	NM_001310732	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24668853-2	chr17	24668746	24668946	+	744.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183149)	promoter-TSS (NM_183149)	-841.0	NM_001348231	213753.0	Mm.219581	NM_183149	ENSMUSG00000041130	Zfp598	BC023040|Ntrap|Znf598	zinc finger protein 598	protein-coding	-0.0392094220164724	-0.024186553813253	-0.0291190483087215	0.260597592300269	0.102661635025604	-0.0230732023289804	0.531815385029559	0.489276781048853	2.17542518313647	0.317691940880331	1
Merged-chr10-121392861-1	chr10	121392761	121392961	+	549.0	f1_c57bl6.idr	intron (NM_029364, intron 13 of 13)	intron (NM_029364, intron 13 of 13)	27771.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	-0.00308446873371554	0.0123320143115028	0.557476297777703	0.00337320085126999	0.13884693501383	0.0134743048940526	0.456554105391032	0.420344635925979	0.746789890157228	0.725383260144773	1
Merged-chr18-69571210-4	chr18	69571136	69571336	+	900.087524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 8 of 19)	intron (NM_001361128, intron 8 of 19)	225076.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-57823229-4	chr6	57823138	57823338	+	996.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146168, intron 1 of 4)	intron (NM_146168, intron 1 of 4)	1887.0	NM_146168	232023.0	Mm.24642	NM_146168	ENSMUSG00000037788	Vopp1	AW146242|Ecop	vesicular, overexpressed in cancer, prosurvival protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-8927091-2	chr3	8926991	8927191	+	716.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001025261, exon 8 of 8)	3' UTR (NM_001025261, exon 8 of 8)	-3234.0	NM_025434	66230.0	Mm.38460	NM_025434	ENSMUSG00000040269	Mrps28	1500012D08Rik|AW061224	mitochondrial ribosomal protein S28	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-71159967-3	chr11	71159866	71160066	+	935.43335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040696, intron 12 of 14)	intron (NM_001040696, intron 12 of 14)	-15262.0	NM_001004142	195046.0	Mm.240227	NM_001004142	ENSMUSG00000069830	Nlrp1a	CARD7|DEFCAP|Gm14|Gm15|NAC|Nalp1|Nalp1a|Nlrp1|PP1044	NLR family, pyrin domain containing 1A	protein-coding	0.919120722831244	2.35249233708804	1.21616462974068	2.10784412529177	1.82196996266809	2.07389414219193	1.22504498237821	0.954403000272565	-0.534520520910791	0.668739482173621	0.993344020005271
Merged-chr8-111178681-2	chr8	111178581	111178781	+	574.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009149, intron 11 of 25)	intron (NM_009149, intron 11 of 25)	-33183.0	NR_040364	434350.0	Mm.442061	NR_040363		9430091E24Rik	-	RIKEN cDNA 9430091E24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-34284584-2	chr19	34284488	34284688	+	687.0	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-6071.0	NM_007987	14102.0	Mm.1626	NM_007987	ENSMUSG00000024778	Fas	AI196731|APO1|APT1|CD95|TNFR6|Tnfrsf6|lpr	Fas (TNF receptor superfamily member 6)	protein-coding	4.18880044377065	3.44227033793347	3.06062406364441	2.75904153356476	3.08684152939906	1.58891856221644	3.18105504752795	1.7599716612097	-1.4505524782334	0.0620025913865291	0.369672749437109
Merged-chr15-58791510-6	chr15	58791429	58791629	+	842.7777710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175212, intron 3 of 6)	intron (NM_175212, intron 3 of 6)	31898.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-97924059-4	chr4	97923956	97924156	+	986.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010905, intron 2 of 10)	intron (NM_010905, intron 2 of 10)	146430.0	NM_010905	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-28321911-4	chr5	28321820	28322020	+	875.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028234, intron 1 of 18)	intron (NM_028234, intron 1 of 18)	4731.0	NM_028234	381626.0	Mm.304075	NM_028234	ENSMUSG00000048271	Rbm33	3200001K10Rik|6430512A10Rik|AA386890|Prr8	RNA binding motif protein 33	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-35585577-2	chr8	35585493	35585693	+	555.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_040376, intron 1 of 2)	ORR1F|LTR|ERVL-MaLR	-2205.0	NM_001081279	52065.0	Mm.103246	NM_001081279	ENSMUSG00000070056	Mfhas1	2310066G09Rik|D8Ertd91e	malignant fibrous histiocytoma amplified sequence 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-144394665-1	chr3	144394565	144394765	+	546.0	f1_balb.idr	Intergenic	Intergenic	175551.0	NM_011828	23908.0	Mm.12863	NM_011828	ENSMUSG00000040151	Hs2st1	2OST|AW214369|Hs2st|mKIAA0448	heparan sulfate 2-O-sulfotransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-88203034-3	chr7	88202937	88203137	+	724.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-75048.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114926841-4	chr11	114926641	114926841	+	866.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347651, intron 2 of 3)	intron (NM_001347651, intron 2 of 3)	7645.0	NM_001347651	217304.0	Mm.185355	NM_199221	ENSMUSG00000063193	Cd300lb	CLM-7|Clm7|Gm253|LMIR5	CD300 molecule like family member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-83925073-4	chr9	83924918	83925118	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001305935)	promoter-TSS (NM_001305935)	-119.0	NM_001305935	12040.0	Mm.12819	NM_199195	ENSMUSG00000032263	Bckdhb	BCKDE1B|BCKDH E1-beta	branched chain ketoacid dehydrogenase E1, beta polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-63857356-3	chr17	63857291	63857491	+	835.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MD|LINE|L1	-6590.0	NM_001037997	14158.0	Mm.23039	NM_008000	ENSMUSG00000000127	Fer	AV082135|C330004K01Rik|Fert|Fert2	fer (fms/fps related) protein kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-28420917-4	chr15	28420799	28420999	+	959.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133365, intron 66 of 78)	intron (NM_133365, intron 66 of 78)	217133.0	NM_133365	110082.0	Mm.248464	NM_133365	ENSMUSG00000022262	Dnah5	AU022615|Dnahc5|Mdnah5|b2b1134Clo|b2b1154Clo|b2b1537Clo|b2b1565Clo|b2b3491Clo|b2b601Clo|mKIAA1603	dynein, axonemal, heavy chain 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-6475690-3	chr7	6475561	6475761	+	867.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_146916)	TTS (NM_146916)	1549.0	NM_146916	258918.0	Mm.377748	NM_146916	ENSMUSG00000054938	Olfr1346	MOR103-6	olfactory receptor 1346	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-156472352-2	chr1	156472252	156472452	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009230, intron 1 of 15)	G-rich|Low_complexity|Low_complexity	1976.0	NM_009230	20652.0	Mm.28099	NM_009230	ENSMUSG00000026600	Soat1	8430426K15Rik|ACAT-1|AW550831|Acact|ald|hid	sterol O-acyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-9090643-2	chr13	9090543	9090743	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-3238.0	NM_001311117	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-99351671-2	chr13	99351571	99351771	+	628.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173757, intron 2 of 10)	L1MC4|LINE|L1	6885.0	NM_173757	218506.0	Mm.30208	NM_173757	ENSMUSG00000041632	Mrps27	2610028H14Rik	mitochondrial ribosomal protein S27	protein-coding	0.497651126714524	0.528095232671784	1.14013670947749	1.20060043901808	0.499582582856095	0.530304247845218	1.1524023182261	1.20914612849149	0.0343160002704841	0.984244667067077	0.998431161219273
Merged-chr2-90631025-4	chr2	90630930	90631130	+	871.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46185.0	NM_021512	59015.0	Mm.24532	NM_021512	ENSMUSG00000051329	Nup160	160kDa|2810011M03Rik|AA414952|AU020188|Gtl-13|Gtl1-13|Gtl13|mKIAA0197	nucleoporin 160	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-43841512-3	chr16	43841414	43841614	+	859.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48162.0	NM_029128	106248.0	Mm.275354	NM_029128	ENSMUSG00000022704	Qtrt2	3110012M05Rik|4930470H18Rik|AI648807|Qrtr2|Qtrtd1	queuine tRNA-ribosyltransferase accessory subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-58275318-4	chr9	58275219	58275419	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22155.0	NM_026942	69106.0	Mm.216502	NM_026942	ENSMUSG00000032333	Stoml1	1810015E19Rik|AI847431|SLP1|STORP|UNC24|WPB72	stomatin-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-24616597-1	chr19	24616497	24616697	+	641.0	f0_balb.idr	Intergenic	Intergenic	-57411.0	NM_183160	226040.0	Mm.391170	NM_183160	ENSMUSG00000048572	Tmem252	E030010A14Rik	transmembrane protein 252	protein-coding	1.45917969154201	0.651888172464227	0.638946349748748	0.628790857063396	1.7578130893906	0.888422372834123	0.858650553104383	1.38077747172353	1.48157028301826	0.337197029047908	0.83703930093451
Merged-chr4-32011792-2	chr4	32011709	32011909	+	750.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009316, intron 14 of 16)	Lx8|LINE|L1	47702.0	NM_172688	26409.0	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding	-0.355102099045913	-1.08800443761493	-1.10000538458774	-1.10823191762646	-1.11144624499335	-1.08540378234277	-1.09728863324636	-1.10783509528487	-2.90772050925769	0.391763856616344	1
Merged-chr10-34207805-4	chr10	34207696	34207896	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172508)	promoter-TSS (NM_172508)	-245.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-44130671-4	chr16	44130575	44130775	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007508, intron 1 of 14)	intron (NM_007508, intron 1 of 14)	8584.0	NM_001358203	11964.0	Mm.217787	NM_007508	ENSMUSG00000052459	Atp6v1a	AI647066|Atp6a1|Atp6a2|Atp6v1a1|VA68|VPP2	ATPase, H+ transporting, lysosomal V1 subunit A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-34221801-2	chr18	34221702	34221902	+	813.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040534)	promoter-TSS (NR_040534)	-30.0	NR_040534	633395.0	Mm.414290	NR_040534	ENSMUSG00000073607	Gm10548	-	ribosomal protein L29 pseudogene	pseudo	1.63301945557452	1.97570097032842	2.29404105319367	1.02506578168431	1.86272418729504	1.06981777461647	2.13491646160923	1.25368502294743	-0.4447456583965	0.709154524023506	0.998431161219273
Merged-chr5-99374649-4	chr5	99374538	99374738	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-121711.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-88097922-4	chr7	88097819	88098019	+	977.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081414, intron 9 of 9)	intron (NM_001081414, intron 9 of 9)	-180166.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-31047143-3	chr5	31047045	31047245	+	711.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360022, intron 2 of 17)	intron (NM_001360022, intron 2 of 17)	934.0	NM_177870	330064.0	Mm.205463	NM_177870	ENSMUSG00000006641	Slc5a6	E430023I20	solute carrier family 5 (sodium-dependent vitamin transporter), member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-124126596-4	chr9	124126512	124126712	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009917, exon 2 of 2)	3' UTR (NM_009917, exon 2 of 2)	5069.0	NM_009917	12774.0	Mm.14302	NM_009917	ENSMUSG00000079227	Ccr5	AM4-7|CD195|Cmkbr5	chemokine (C-C motif) receptor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-119310816-2	chr13	119310716	119310916	+	543.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3_Mus|LINE|L1	98195.0	NM_008710	18115.0	Mm.132584	NM_008710	ENSMUSG00000116207	Nnt	4930423F13Rik|AI323702|BB168308	nicotinamide nucleotide transhydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125436861-4	chr6	125436742	125436942	+	670.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER5|LTR|ERV1	-56338.0	NM_198604	213522.0	Mm.333396	NM_198604	ENSMUSG00000038167	Plekhg6	BC026778|Gm155	pleckstrin homology domain containing, family G (with RhoGef domain) member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27754263-3	chr17	27754159	27754359	+	807.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271511, intron 3 of 3)	intron (NM_001271511, intron 3 of 3)	-23256.0	NM_001357728	30051.0	Mm.26768	NM_013891	ENSMUSG00000024215	Spdef	PDEF|Pse	SAM pointed domain containing ets transcription factor	protein-coding	1.05662436145229	1.61836683461251	1.36182948033795	1.521304482197	1.74443301476095	2.3365753094843	2.25293967721336	2.57947150639469	2.60058227017064	0.0154562491876836	0.148197185205509
Merged-chr7-16294980-4	chr7	16294882	16295082	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8187.0	NM_001136471	243846.0	Mm.482401	NM_172297	ENSMUSG00000041375	Ccdc9	2600011L02Rik	coiled-coil domain containing 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-127582557-2	chr6	127582457	127582657	+	840.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033464, intron 1 of 6)	intron (NM_001033464, intron 1 of 6)	4582.0	NM_001033464	381812.0	Mm.296093	NM_001033464	ENSMUSG00000061414	Cracr2a	Efcab4b|Gm1073|Gm462	calcium release activated channel regulator 2A	protein-coding	-0.491468278371647	-0.927939374630806	-0.767201490490481	-0.781729425805257	-0.941507723674601	-0.925426758752514	-0.936211210574757	-0.938398658429145	-2.80960807284759	0.328620194426061	1
Merged-chr13-9191382-4	chr13	9191272	9191472	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-85153.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-57695907-1	chr3	57695807	57696007	+	575.0	f0_balb.idr	Intergenic	MT2B|LTR|ERVL	-3370.0	NM_001033349	242037.0	Mm.291091	NM_001033349	ENSMUSG00000074591	Ankub1	Gm410	ankrin repeat and ubiquitin domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-35079792-4	chr13	35079677	35079877	+	947.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-85633.0	NM_001110331	23986.0	Mm.491141	NM_011868	ENSMUSG00000021417	Eci2	Acbd2|Drs1|Hca88|Peci	enoyl-Coenzyme A delta isomerase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-142894803-3	chr7	142894697	142894897	+	698.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009377, intron 9 of 12)	intron (NM_009377, intron 9 of 12)	5169.0	NM_009377	21823.0	Mm.1292	NM_009377	ENSMUSG00000000214	Th	-	tyrosine hydroxylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-74780066-4	chr18	74779934	74780134	+	963.025024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177470, intron 1 of 9)	intron (NM_177470, intron 1 of 9)	822.0	NM_177470	52538.0	Mm.245724	NM_177470	ENSMUSG00000036880	Acaa2	0610011L04Rik|AI255831|AI265397|D18Ertd240e	acetyl-Coenzyme A acyltransferase 2 (mitochondrial 3-oxoacyl-Coenzyme A thiolase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53149071-4	chr4	53148967	53149167	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 1 of 49)	intron (NM_013454, intron 1 of 49)	10828.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0.0101795868482943	0.540764883917397	0.71804150244349	0.0180634730720467	0.0113550154157278	0.550597899586206	0.0241426176640167	0.0188907542610902	-1.31266787071591	0.554950814630004	1
Merged-chr9-102792013-3	chr9	102791887	102792087	+	969.861084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42933.0	NM_013649	20187.0	Mm.335391	NM_013649	ENSMUSG00000032547	Ryk	AW536699|ERK-3|Vik	receptor-like tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-38351902-2	chr2	38351802	38352002	+	769.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010710, intron 1 of 4)	CpG	594.0	NM_010710	16870.0	Mm.142856	NM_010710	ENSMUSG00000000247	Lhx2	LH2A|Lh-2|Lim2|ap|apterous	LIM homeobox protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-152208198-2	chr3	152208098	152208298	+	823.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356363, intron 1 of 3)	PB1D9|SINE|Alu	1885.0	NM_001356363	67035.0	Mm.46746	NM_025926	ENSMUSG00000028035	Dnajb4	1700029A20Rik|2010306G19Rik|5730460G06Rik	DnaJ heat shock protein family (Hsp40) member B4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81627696-4	chr10	81627574	81627774	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027480)	promoter-TSS (NM_027480)	-66.0	NM_181586	50721.0	Mm.25643	NM_181586	ENSMUSG00000034748	Sirt6	2810449N18Rik|AI043036|Sir2l6	sirtuin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-41852206-3	chr12	41852103	41852303	+	813.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053122, intron 6 of 6)	intron (NM_053122, intron 6 of 6)	-366146.0	NM_010733	16981.0	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167924310-2	chr2	167924210	167924410	+	754.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-8017.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-105997484-4	chr1	105997387	105997587	+	989.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122675, intron 1 of 12)	intron (NM_001122675, intron 1 of 12)	7081.0	NM_001122675	227449.0	Mm.210188	NM_001122675	ENSMUSG00000038866	Zcchc2	9930114B20Rik|AW212015	zinc finger, CCHC domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-85713686-4	chr11	85713599	85713799	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045875, intron 1 of 5)	intron (NR_045875, intron 1 of 5)	6045.0	NR_045875	71489.0	Mm.442482	NR_045875	ENSMUSG00000086199	Bcas3os1	8430403D17Rik	breast carcinoma amplified sequence 3, opposite strand 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-42144963-3	chr10	42144843	42145043	+	816.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-126561.0	NM_001034858	213402.0	Mm.211320	NM_001034858	ENSMUSG00000071324	Armc2	2610018I05Rik	armadillo repeat containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-16686808-2	chr18	16686708	16686908	+	932.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007664, intron 2 of 15)	ORR1F|LTR|ERVL-MaLR	122438.0	NM_007664	12558.0	Mm.257437	NM_007664	ENSMUSG00000024304	Cdh2	CDHN|N-CAD|Ncad	cadherin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24694694-2	chr17	24694595	24694795	+	743.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023040, intron 2 of 2)	intron (NM_023040, intron 2 of 2)	1461.0	NM_023040	11692.0	Mm.28124	NM_023040	ENSMUSG00000040888	Gfer	Alr|ERV1	growth factor, augmenter of liver regeneration	protein-coding	-1.36245527554381	-1.47758440807466	-1.48704571646499	-1.19707836829368	-1.50667469222183	-1.47553410307769	-1.4849038836314	-1.49342636832094	-1.86907304515541	0.591535440840713	1
Merged-chr4-130792830-14	chr4	130792676	130792876	+	912.619019	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011520, exon 1 of 5)	exon (NM_011520, exon 1 of 5)	239.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-12996502-2	chr17	12996402	12996602	+	644.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3963.0	NM_175394	60532.0	Mm.275521	NM_175394	ENSMUSG00000060475	Wtap	2810408K05Rik|9430038B09Rik	Wilms tumour 1-associating protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-116614511-3	chr3	116614390	116614590	+	853.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030016)	promoter-TSS (NM_030016)	97.0	NM_030016	229780.0	Mm.259648	NM_030016	ENSMUSG00000033439	Trmt13	4631408H19Rik|A330067P21|A930028L21Rik|Ccdc76	tRNA methyltransferase 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-100570224-4	chr5	100570126	100570326	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139198, intron 1 of 4)	intron (NM_139198, intron 1 of 4)	1979.0	NM_139198	231507.0	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-111944978-4	chr13	111944895	111945095	+	890.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	77059.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-38575669-2	chr18	38575569	38575769	+	817.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	25599.0	NM_011898	24066.0	Mm.42038	NM_011898	ENSMUSG00000024427	Spry4	A030006O18Rik|sprouty4	sprouty RTK signaling antagonist 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-144247110-4	chr1	144247015	144247215	+	903.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015811, intron 3 of 4)	intron (NM_015811, intron 3 of 4)	1989.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-60746972-2	chr13	60746872	60747072	+	720.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 19 of 26)	intron (NM_134062, intron 19 of 26)	39392.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	0.414987020361907	0.080612613186856	0.500939035998903	0.0719789339880002	0.4231209368564	0.0817163383249208	0.509981850822076	0.0726333017043799	0.0412636442560988	0.984174987478463	1
Merged-chr4-138969300-4	chr4	138969177	138969377	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_025786)	TTS (NM_025786)	2165.0	NM_025786	66825.0	Mm.252312	NM_025786	ENSMUSG00000070661	Rnf186	9130020G10Rik	ring finger protein 186	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-11602186-3	chr8	11602098	11602298	+	772.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32838.0	NR_030781	102334.0	Mm.12459	NM_133971	ENSMUSG00000031508	Ankrd10	4833425P12Rik|AW549277	ankyrin repeat domain 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-13215035-2	chr16	13214935	13215135	+	791.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	-41446.0	NM_001122667	239719.0	Mm.270643	NM_153588	ENSMUSG00000009569	Mkl2	Gt4-1|MRTF-B|Mrtfb|mKIAA1243	MKL/myocardin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126970610-2	chr8	126970510	126970710	+	735.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172762, intron 2 of 10)	ID_B1|SINE|B4	469.0	NM_172762	52202.0	Mm.28199	NM_172762	ENSMUSG00000033931	Rbm34	4930547K05Rik|6330444B11|D8Ertd233e	RNA binding motif protein 34	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21989851-1	chr9	21989751	21989951	+	640.0	f0_balb.idr	promoter-TSS (NM_023622)	promoter-TSS (NM_023622)	-398.0	NM_023622	71746.0	Mm.110594	NM_023622	ENSMUSG00000040146	Rgl3	1300003D20Rik|mFLJ00153	ral guanine nucleotide dissociation stimulator-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28024316-2	chr17	28024216	28024416	+	617.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_181413, intron 12 of 24)	intron (NM_181413, intron 12 of 24)	56268.0	NM_001357681	21463.0	Mm.29758	NM_013687	ENSMUSG00000062859	Tcp11	D17Ken1|Tcp-11	t-complex protein 11	protein-coding	0.185707043026013	-0.178650416759887	-0.18356085143614	-0.187351423145063	0.0827853160063506	-0.177543906566091	0.597860602751189	-0.186689081580579	1.70204022828318	0.472655962039439	1
Merged-chr14-30628880-2	chr14	30628780	30628980	+	583.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2672.0	NM_011103	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84925753-2	chr8	84925653	84925853	+	922.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_019945, intron 7 of 25)	intron (NM_019945, intron 7 of 25)	11600.0	NM_019945	56527.0	Mm.154614	NM_019945	ENSMUSG00000053693	Mast1	9430008B02Rik|SAST|SAST170	microtubule associated serine/threonine kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-4770555-3	chr13	4770461	4770661	+	905.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-161397.0	NM_018859	56043.0	Mm.251908	NM_018859	ENSMUSG00000045410	Akr1e1	1810061I10Rik|Akr1e2	aldo-keto reductase family 1, member E1	protein-coding	0.0906282275540408	-0.151441020796742	0.0142888201855506	0.532372314897217	0.096962945174709	-0.150431699968367	-0.154926096253031	-0.158750458944063	-2.15389549151178	0.339663247573786	1
Merged-chr2-60285385-4	chr2	60285259	60285459	+	840.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290660)	promoter-TSS (NM_001290660)	-875.0	NM_001290660	66205.0	Mm.227281	NM_025422	ENSMUSG00000060703	Cd302	1110055L24Rik|AI159627	CD302 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-32032931-4	chr9	32032885	32033085	+	864.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-83151.0	NM_001195632	330914.0	Mm.46683	NM_177379	ENSMUSG00000041444	Arhgap32	3426406O18Rik|Gc-gap|Grit|Px-rics|Rics|mKIAA0712|p200Rhogap|p250Gap	Rho GTPase activating protein 32	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-66592287-4	chr9	66592168	66592368	+	902.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144937, intron 1 of 14)	CpG	847.0	NM_001302122	235441.0	Mm.32465	NM_144937	ENSMUSG00000032376	Usp3	AA409661|BC017156	ubiquitin specific peptidase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-45251446-4	chr9	45251333	45251533	+	986.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15274.0	NR_106054	102466803.0		NR_106054	ENSMUSG00000098361	Mir7086	Gm27643|mmu-mir-7086	microRNA 7086	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132528227-2	chr4	132528127	132528327	+	768.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4_|SINE|ID	7187.0	NM_007512	11983.0	Mm.2171	NM_007512	ENSMUSG00000054428	Atpif1	Atpi|IF(1)|If1	ATPase inhibitory factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-35872579-4	chr16	35872470	35872670	+	908.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1188.0	NM_001039530	547253.0	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-104249871-4	chr8	104249797	104249997	+	784.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286383)	promoter-TSS (NM_001286383)	-964.0	NM_001037841	75458.0	Mm.269219	NM_029295	ENSMUSG00000054400	Cklf	1700001C14Rik|1810018M11Rik|A730028G07Rik|C32|CKLF1|CKLF3|CKLF4|CKLF5|Cklf2|Cklf6|HSPC224|UCK-1	chemokine-like factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-109231478-1	chr2	109231378	109231578	+	582.5	f0_balb.idr	intron (NM_029790, intron 2 of 5)	intron (NM_029790, intron 2 of 5)	46812.0	NM_029790	76894.0	Mm.330451	NM_029790	ENSMUSG00000057234	Mettl15	0610027B03Rik|AI303697|AW049952|Mett5d1	methyltransferase like 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-53567579-4	chr17	53567505	53567705	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151733, intron 1 of 16)	CpG	634.0	NR_151733	18519.0	Mm.255025	NM_020005	ENSMUSG00000000708	Kat2b	A930006P13Rik|AI461839|AW536563|Pcaf|p/CAF	K(lysine) acetyltransferase 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-32516892-4	chr9	32516843	32517043	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008026, intron 1 of 8)	intron (NM_008026, intron 1 of 8)	24509.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-113334658-4	chr11	113334546	113334746	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027216, intron 6 of 9)	intron (NM_027216, intron 6 of 9)	-124977.0	NR_040276	319871.0	Mm.383743	NR_040276	ENSMUSG00000085421	4732490B19Rik	-	RIKEN cDNA 4732490B19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47614047-2	chr17	47613947	47614147	+	681.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_020048, intron 2 of 3)	intron (NM_020048, intron 2 of 3)	2451.0	NM_020048	56771.0	Mm.59393	NM_020048	ENSMUSG00000092558	Med20	1110011O05Rik|2410115I17Rik|AU018348|Trfp	mediator complex subunit 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84957054-1	chr8	84956954	84957154	+	636.0	f1_balb.idr	TTS (NM_001357326)	TTS (NM_001357326)	8957.0	NM_027187	69724.0	Mm.182470	NM_027187	ENSMUSG00000052926	Rnaseh2a	2400006P09Rik|RNASEHI|RNHIA|RNHL	ribonuclease H2, large subunit	protein-coding	0.90380195919398	1.00022253984379	1.46573062865402	2.1153173540349	0.910313271220169	2.74395937969691	2.5685444051974	1.76210790156288	1.77981595875254	0.147866589408523	0.59814677671054
Merged-chr7-38018659-4	chr7	38018552	38018752	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011274, intron 1 of 10)	(TG)n|Simple_repeat|Simple_repeat	900.0	NM_011274	19777.0	Mm.387220	NM_011274	ENSMUSG00000030421	Uri1	C80913|NNX3|Rmp	URI1, prefoldin-like chaperone	protein-coding	4.36484157312277	5.04058116816818	4.36949619487484	3.95434463183709	4.58824293172974	4.36898515501038	2.46556850790921	4.89652731092914	-0.185305564857569	0.719577898656859	0.998431161219273
Merged-chr6-5103973-4	chr6	5103889	5104089	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181595, intron 7 of 15)	intron (NM_181595, intron 7 of 15)	89957.0	NM_011134	18979.0	Mm.237657	NM_011134	ENSMUSG00000002588	Pon1	Pon	paraoxonase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140640464-2	chr5	140640364	140640564	+	969.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001308040, intron 1 of 12)	MTC|LTR|ERVL-MaLR	8567.0	NM_001308040	78339.0	Mm.28947	NM_175274	ENSMUSG00000036565	Ttyh3	2900029G13Rik|AI414930|TTY3|mTTY3	tweety family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-8914279-2	chr4	8914196	8914396	+	596.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	162972.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-4910048-1	chr18	4909948	4910148	+	804.0	f0_balb.idr	Intergenic	LTR40b|LTR|ERVL	97562.0	NR_045881	100038439.0	Mm.387569	NR_045881	ENSMUSG00000097043	Gm10556	-	predicted gene 10556	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24021870-2	chr17	24021768	24021968	+	653.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-16375.0	NM_175440	213171.0	Mm.133083	NM_175440	ENSMUSG00000050762	Prss27	CAPH2|Mpn|marapsin	protease, serine 27	protein-coding	2.93937784897341	2.69333588274003	2.26652229833079	1.74172259368204	2.72193505072765	2.49446456734195	1.32166890688875	1.54275824318754	-0.690624199393337	0.472658595679682	0.926125823511231
Merged-chr7-48882493-4	chr7	48882454	48882654	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360812)	promoter-TSS (NM_001360812)	-958.0	NM_001360812	108961.0	Mm.240566	NM_001013368	ENSMUSG00000046179	E2f8	4432406C08Rik|AA410048	E2F transcription factor 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-21332340-4	chr5	21332249	21332449	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029195, intron 3 of 18)	intron (NM_029195, intron 3 of 18)	-40324.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-6008801-4	chr17	6008698	6008898	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357667, intron 7 of 24)	intron (NM_001357667, intron 7 of 24)	1218.0	NM_001290698	20975.0	Mm.236068	NM_011523	ENSMUSG00000023805	Synj2	AI481647|SJ2|mKIAA0348	synaptojanin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-97313135-4	chr10	97313041	97313241	+	974.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-110337.0	NR_039547	100628616.0		NR_039547	ENSMUSG00000105557	Mir3966	mmu-mir-3966|mu-mir-3966	microRNA 3966	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-68737518-4	chr10	68737420	68737620	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177794, intron 1 of 5)	intron (NM_177794, intron 1 of 5)	13774.0	NM_177794	327766.0	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-113628879-2	chr13	113628779	113628979	+	753.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10315.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-46136023-2	chr4	46135923	46136123	+	606.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173033, intron 1 of 9)	intron (NM_173033, intron 1 of 9)	2452.0	NM_173033	272027.0	Mm.249594	NM_173033	ENSMUSG00000035495	Tstd2	3010020C06	thiosulfate sulfurtransferase (rhodanese)-like domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-66263537-2	chr5	66263437	66263637	+	809.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001302833, intron 2 of 12)	B3|SINE|B2	2696.0	NM_027602	70918.0	Mm.23166	NM_027602	ENSMUSG00000029206	Nsun7	4921525L17Rik	NOL1/NOP2/Sun domain family, member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70562932-4	chr8	70562832	70563032	+	918.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007924, intron 1 of 11)	intron (NM_007924, intron 1 of 11)	23257.0	NM_007924	13716.0	Mm.271973	NM_007924	ENSMUSG00000070002	Ell	Ell1|Men	elongation factor RNA polymerase II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32550002-3	chr2	32549879	32550079	+	736.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153560, intron 1 of 10)	intron (NM_153560, intron 1 of 10)	14620.0	NM_153560	98952.0	Mm.4065	NM_153560	ENSMUSG00000039157	Fam102a	AI426465|C230093N12Rik|Eeig1	family with sequence similarity 102, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-138290940-2	chr1	138290840	138291040	+	871.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17B|LTR|ERVK	17202.0	NM_177397	338375.0	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-43498616-2	chr19	43498516	43498716	+	713.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	25989.0	NM_010324	14718.0	Mm.19039	NM_010324	ENSMUSG00000025190	Got1	AI789014|Got-1|cAspAT|cCAT	glutamic-oxaloacetic transaminase 1, soluble	protein-coding	-1.7024385483431	-1.81249224917775	-1.82134771053534	-1.82862185015837	-1.70038292649591	-1.81057323376012	-1.81934302819017	-1.82731978264371	0.0376840119903864	0.991491645451152	1
Merged-chr4-130838115-4	chr4	130838017	130838217	+	779.200012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45580.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-123248125-1	chr8	123248025	123248225	+	596.0	f1_balb.idr	intron (NM_028200, intron 7 of 14)	intron (NM_028200, intron 7 of 14)	-6070.0	NM_020497	57247.0	Mm.379084	NM_020497	ENSMUSG00000001065	Zfp276	AW048709|D8Ertd370e|D8Ertd377e|Znf276	zinc finger protein (C2H2 type) 276	protein-coding	0.615967539890552	0.883366029398587	0.335154173561526	0.512305715534805	0.623581199850979	1.34160867332901	0.337086271373441	0.329551800635417	0.731175428870141	0.672840935572575	1
Merged-chr4-42933844-3	chr4	42933745	42933945	+	836.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001346526, exon 3 of 9)	exon (NM_001346526, exon 3 of 9)	-16022.0	NM_001355438	56323.0	Mm.20437	NM_019874	ENSMUSG00000036052	Dnajb5	1110058L06Rik|AI462558|Hsc40|Hsp40-3	DnaJ heat shock protein family (Hsp40) member B5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-61831161-1	chr4	61831061	61831261	+	599.0	f1_c57bl6.idr	TTS (NM_008649)	TTS (NM_008649)	4019.0	NM_008649	17844.0	Mm.445286	NM_008649	ENSMUSG00000058523	Mup5	Mup18	major urinary protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64812716-4	chr5	64812621	64812821	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008453, intron 1 of 5)	intron (NM_008453, intron 1 of 5)	9198.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71251346-4	chr17	71251213	71251413	+	930.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001357336)	TTS (NM_001357336)	46659.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-75909554-9	chr15	75909523	75909723	+	945.7777710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285430)	promoter-TSS (NM_001285430)	-67.0	NM_001285429	66656.0	Mm.258927	NM_023240	ENSMUSG00000055762	Eef1d	EF-1-delta	eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-146643279-3	chr6	146643123	146643323	+	879.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025315, intron 1 of 3)	intron (NM_025315, intron 1 of 3)	644.0	NM_025315	108098.0	Mm.26212	NM_025315	ENSMUSG00000030291	Med21	0610007L03Rik|AI449604|D19234|D6Ertd782e|Srb7|Surb7	mediator complex subunit 21	protein-coding	0.885875450083824	0.949212171410004	0.929144565475465	2.1030443857328	1.64436086669542	2.09350705888714	1.80049382744507	1.48137249043652	1.27116740156816	0.331447353784132	0.832294966660112
Merged-chr8-54528015-2	chr8	54527915	54528115	+	884.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_029701, intron 2 of 4)	intron (NM_029701, intron 2 of 4)	1983.0	NM_029701	76687.0	Mm.86437	NM_029701	ENSMUSG00000054408	Spcs3	1810011E08Rik|SPC22/23	signal peptidase complex subunit 3 homolog (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94920322-2	chr10	94920222	94920422	+	772.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_018797, intron 2 of 30)	intron (NM_018797, intron 2 of 30)	24256.0	NM_018797	54712.0	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-28843042-4	chr13	28842989	28843189	+	994.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045054, intron 2 of 7)	ORR1E|LTR|ERVL-MaLR	42333.0	NR_045054	72518.0	Mm.37454	NR_045053		2610307P16Rik	AI666457	RIKEN cDNA 2610307P16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-27446220-2	chr7	27446120	27446320	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_032610, intron 1 of 35)	intron (NM_032610, intron 1 of 35)	369.0	NM_032610	80297.0	Mm.459123	NM_032610	ENSMUSG00000011751	Sptbn4	1700022P15Rik|5830426A08Rik|ROSA62|SpbIV|Spnb4|dyn|lnd|nmf261|nmf379|qv	spectrin beta, non-erythrocytic 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36707748-2	chr18	36707648	36707848	+	853.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11823.0	NM_172831	240216.0	Mm.252323	NM_172831	ENSMUSG00000044719	E230025N22Rik	EG240216	Riken cDNA E230025N22 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55774056-2	chr14	55773956	55774156	+	993.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_080435, intron 15 of 25)	intron (NM_080435, intron 15 of 25)	8094.0	NM_008519	16995.0	Mm.20853	NM_008519	ENSMUSG00000046908	Ltb4r1	BLT1|BLTR|Ltb4r|mBLTR	leukotriene B4 receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-121748130-4	chr11	121748005	121748205	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	45678.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-98255212-4	chr13	98255136	98255336	+	977.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178918, intron 6 of 12)	intron (NM_178918, intron 6 of 12)	7756.0	NM_178918	105372.0	Mm.28221	NM_178918	ENSMUSG00000041747	Utp15	AW544865	UTP15 small subunit processome component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117794707-2	chr11	117794607	117794807	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2953.0	NM_029964	77727.0	Mm.159981	NM_029964	ENSMUSG00000025573	6030468B19Rik	Il-40	RIKEN cDNA 6030468B19 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-51105044-2	chr14	51104947	51105147	+	653.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_021472, exon 2 of 2)	exon (NM_021472, exon 2 of 2)	9047.0	NM_201239	58809.0	Mm.202665	NM_021472	ENSMUSG00000021876	Rnase4	C730049F20Rik|Rab1	ribonuclease, RNase A family 4	protein-coding	-0.148805632219782	0.390690247328162	-0.141799335002801	0.225054941956703	-0.148162346076397	0.1778629107664	-0.141036320305097	-0.143991193152365	-1.79384189503473	0.459615052647305	1
Merged-chr10-121533339-3	chr10	121533263	121533463	+	732.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53431.0	NM_019786	56480.0	Mm.34580	NM_019786	ENSMUSG00000020115	Tbk1	1200008B05Rik|AI462036|AW048562	TANK-binding kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-72167406-2	chr5	72167306	72167506	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178599, intron 1 of 4)	intron (NM_178599, intron 1 of 4)	783.0	NM_001356611	27784.0	Mm.44223	NM_178599	ENSMUSG00000029213	Commd8	C77770|D5Buc26e	COMM domain containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106326009-1	chr11	106325909	106326109	+	546.0	f1_balb.idr	intron (NM_133199, intron 18 of 23)	intron (NM_133199, intron 18 of 23)	-11447.0	NM_001313939	15985.0	Mm.2987	NM_008339	ENSMUSG00000040592	Cd79b	B29|Ig-beta|Igb|Igbeta	CD79B antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-138683611-3	chr5	138683505	138683705	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60746.0	NM_183025	243308.0	Mm.36612	NM_183025	ENSMUSG00000056014	A430033K04Rik	C86988	RIKEN cDNA A430033K04 gene	protein-coding	3.65820281312813	3.95222567972879	3.89301398331329	4.70641220622483	4.39460310482611	3.64324098588207	2.93144989785599	3.4978973642704	-0.528824638097815	0.316115856884266	0.818934371145261
Merged-chr13-23532368-2	chr13	23532268	23532468	+	696.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_153173)	TTS (NM_153173)	1324.0	NM_153173	69386.0	Mm.158272	NM_153173	ENSMUSG00000060981	Hist1h4h	1700024H08Rik	histone cluster 1, H4h	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-114948523-4	chr14	114948414	114948614	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC1|LINE|L1	-2566.0	NR_126548	74982.0		NR_126548	ENSMUSG00000115372	1700100I10Rik	1700085D13Rik|4930481K08Rik	RIKEN cDNA 1700100I10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-35814816-2	chr1	35814716	35814916	+	699.900024	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-253584.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-72869935-2	chr5	72869835	72870035	+	689.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1487.0	NM_001113460	21682.0	Mm.319581	NM_013689	ENSMUSG00000029217	Tec	-	tec protein tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80114123-3	chr7	80113988	80114188	+	568.194458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173011, intron 1 of 10)	intron (NM_173011, intron 1 of 10)	1262.0	NM_173011	269951.0	Mm.246432	NM_173011	ENSMUSG00000030541	Idh2	E430004F23|IDPm|Idh-2	isocitrate dehydrogenase 2 (NADP+), mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118095197-4	chr11	118095106	118095306	+	907.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167746, intron 27 of 80)	ORR1E|LTR|ERVL-MaLR	34013.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-103986106-3	chr12	103986014	103986214	+	687.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001166350, exon 2 of 5)	exon (NM_001166350, exon 2 of 5)	3829.0	NM_199314	380780.0	Mm.201338	NM_199314	ENSMUSG00000063232	Serpina11	Gm895	serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 11	protein-coding	1.48725308913074	0.977425154271974	1.98745115416838	1.58718668499654	0.88305930316913	0.741125506720215	0.95247816496589	0.712625524961643	-3.48250647035321	0.0201821308736188	0.180256977336237
Merged-chr6-16977534-3	chr6	16977430	16977630	+	825.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-79089.0	NM_031198	21426.0	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-103310098-4	chr11	103309990	103310190	+	796.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34612.0	NM_133715	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	3.23151938624133	1.59003082204217	3.56083928833021	3.11644136882098	2.97959902428902	1.60191668574961	3.31249525261708	3.21117126240507	-0.220124661911263	0.790365976021727	0.998431161219273
Merged-chr19-24703850-1	chr19	24703750	24703950	+	901.0	f0_balb.idr	intron (NM_175013, intron 10 of 10)	L3b|LINE|CR1	29842.0	NM_183160	226040.0	Mm.391170	NM_183160	ENSMUSG00000048572	Tmem252	E030010A14Rik	transmembrane protein 252	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-21992154-4	chr10	21992049	21992249	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161849)	promoter-TSS (NM_001161849)	-74.0	NM_001161849	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-79163069-4	chr8	79162968	79163168	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001294279, intron 8 of 14)	intron (NM_001294279, intron 8 of 14)	85515.0	NM_026315	67687.0	Mm.178707	NM_026315	ENSMUSG00000031682	1700011L22Rik	-	RIKEN cDNA 1700011L22 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-165649239-2	chr1	165649139	165649339	+	973.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_178593, exon 7 of 7)	3' UTR (NM_178593, exon 7 of 7)	-14698.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-11190232-2	chr4	11190132	11190332	+	563.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1119.0	NM_001037134	12448.0	Mm.35867	NM_009830	ENSMUSG00000028212	Ccne2	-	cyclin E2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101141325-4	chr15	101141218	101141418	+	930.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001277255, intron 11 of 11)	(CTGGGG)n|Simple_repeat|Simple_repeat	12796.0	NM_001277257	11482.0	Mm.279542	NM_009612	ENSMUSG00000000530	Acvrl1	AI115505|AI427544|Acvrlk1|Alk1	activin A receptor, type II-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-115857485-4	chr4	115857368	115857568	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355174, intron 3 of 11)	intron (NM_001355174, intron 3 of 11)	18270.0	NM_001355174	17346.0	Mm.209327	NM_021461	ENSMUSG00000028708	Mknk1	2410048M24Rik|Mnk1	MAP kinase-interacting serine/threonine kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-150900886-3	chr5	150900795	150900995	+	638.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-51712.0	NM_013823	16591.0	Mm.6500	NM_013823	ENSMUSG00000058488	Kl	alpha-kl	klotho	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-25974891-2	chr8	25974804	25975004	+	696.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_029884, intron 1 of 17)	intron (NM_029884, intron 1 of 17)	1840.0	NM_029884	52120.0	Mm.28326	NM_029884	ENSMUSG00000037260	Hgsnat	9430010M12Rik|AW208455|D8Ertd354e|Tmem76	heparan-alpha-glucosaminide N-acetyltransferase	protein-coding	2.63112716080207	1.18635824029388	1.16006905201471	2.09827696256033	2.09888483065924	2.25953855541974	1.61575669765491	1.87294981936413	0.0808918496349192	0.941738946346857	0.998431161219273
Merged-chr13-20209066-4	chr13	20208978	20209178	+	877.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 3 of 21)	intron (NM_080288, intron 3 of 21)	118571.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-85332972-1	chr1	85332872	85333072	+	964.0	f1_balb.idr	Intergenic	Intergenic	-62406.0	NM_001037909	620078.0	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik	RIKEN cDNA C130026I21 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53033845-2	chr4	53033745	53033945	+	928.833374	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_013454, exon 50 of 50)	3' UTR (NM_013454, exon 50 of 50)	21965.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-79323636-4	chr15	79323587	79323787	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016915, intron 1 of 15)	intron (NM_016915, intron 1 of 15)	4684.0	NM_016915	53357.0	Mm.155620	NM_016915	ENSMUSG00000042632	Pla2g6	BB112799|PNPLA9|iPLA(2)beta|iPLA2|iPLA2beta	phospholipase A2, group VI	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-124659644-2	chr2	124659544	124659744	+	633.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_172537, exon 14 of 17)	exon (NM_172537, exon 14 of 17)	6063.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-57065396-2	chr4	57065291	57065491	+	593.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355492, intron 14 of 24)	intron (NM_001355492, intron 14 of 24)	-75000.0	NM_001142965	230235.0	Mm.207654	NM_001142965	ENSMUSG00000045589	Frrs1l	6430704M03Rik	ferric-chelate reductase 1 like	protein-coding	-2.18138529563533	-2.15523716995652	-2.1631445789866	-2.16963996020037	-2.05513010215571	-2.15352360143315	-2.16135451490766	-2.16847729006863	0.759018020146679	0.829933115115583	1
Merged-chr11-109302496-2	chr11	109302396	109302596	+	722.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4315.0	NM_011268	19739.0	Mm.38548	NM_011268	ENSMUSG00000020599	Rgs9	RGS9-1|Rgs9-2	regulator of G-protein signaling 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-108441560-1	chr6	108441460	108441660	+	652.0	f1_balb.idr	intron (NM_010585, intron 44 of 61)	B3|SINE|B2	-48183.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	0.297591578629719	0.365406707481208	0.344344875518931	1.30808501599839	0.936529732058711	0.370017982357513	0.349078368336306	2.53376033063183	2.31683402214549	0.472330911064648	0.926125823511231
Merged-chr11-61579083-2	chr11	61578983	61579183	+	899.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252188, intron 1 of 10)	CpG	604.0	NM_010148	13855.0	Mm.139695	NM_010148	ENSMUSG00000001036	Epn2	9530051D10Rik|AA536924|Ibp2	epsin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-79740781-2	chr15	79740681	79740881	+	630.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_194342, intron 1 of 16)	intron (NM_194342, intron 1 of 16)	1755.0	NM_194342	223697.0	Mm.202715	NM_194342	ENSMUSG00000042524	Sun2	B230369L08Rik|C030011B15|Unc84b	Sad1 and UNC84 domain containing 2	protein-coding	-1.32440223303897	-1.29339468673833	-0.717877708899544	-1.31276353204239	-1.32392690786997	-1.29109028300231	-1.30162128075409	-1.31119997543009	-2.49510383040271	0.470258445164311	1
Merged-chr2-170175674-2	chr2	170175574	170175774	+	942.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-32999.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-73445000-2	chr12	73444900	73445100	+	800.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35437.0	NR_046013	380765.0	Mm.490476	NR_046013	ENSMUSG00000056359	D830013O20Rik	Gm891	RIKEN cDNA D830013O20 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-110248824-3	chr7	110248715	110248915	+	691.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009302, intron 2 of 11)	intron (NM_009302, intron 2 of 11)	27112.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-99184897-5	chr13	99184795	99184995	+	782.766663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001004149)	promoter-TSS (NM_001004149)	72.0	NM_001004149	238803.0	Mm.343207	NM_001004149	ENSMUSG00000050919	Zfp366	DC-SCRIPT|Znf366	zinc finger protein 366	protein-coding	1.35884536515314	0.726969392883844	0.713179072659214	1.54866513060099	1.70358627211748	0.730041916413339	0.716243639691165	1.55856146625218	0.442662058017365	0.778035877864001	0.998431161219273
Merged-chr9-31029870-3	chr9	31029708	31029908	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172765)	promoter-TSS (NM_172765)	-836.0	NM_001115130	235132.0	Mm.239355	NM_172765	ENSMUSG00000047412	Zbtb44	6030404E16Rik|Btbd15|E230011F09	zinc finger and BTB domain containing 44	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-75697419-2	chr2	75697319	75697519	+	850.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_132727, intron 1 of 1)	intron (NR_132727, intron 1 of 1)	7244.0	NR_132727	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-55488808-4	chr4	55488706	55488906	+	960.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16B|LTR|ERVL	43669.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69802972-4	chr11	69802883	69803083	+	984.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027913)	promoter-TSS (NR_027913)	-686.0	NR_027913	74341.0	Mm.280165	NR_027913		G630025P09Rik	4632403M07Rik	RIKEN cDNA G630025P09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-56530748-1	chr19	56530648	56530848	+	805.0	f1_balb.idr	intron (NR_153440, intron 9 of 9)	intron (NR_153440, intron 9 of 9)	17374.0	NM_001360437	55947.0	Mm.2805	NM_018831	ENSMUSG00000025077	Dclre1a	2810043H12Rik|AU022226|Pso2|Smn1a|Snm1|mKIAA0086	DNA cross-link repair 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-49484929-3	chr9	49484880	49485080	+	792.200012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172770, intron 1 of 21)	intron (NM_172770, intron 1 of 21)	1245.0	NM_172770	235330.0	Mm.177413	NM_172770	ENSMUSG00000040219	Ttc12	E330017O07Rik	tetratricopeptide repeat domain 12	protein-coding	1.27782525167234	0.650188036730586	0.63741828545102	0.627402526082916	1.54742735873406	0.653035167826319	1.18456173966005	1.64947181717032	2.0648364643831	0.199309032786185	0.682971184892037
Merged-chr4-45013233-4	chr4	45013131	45013331	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163284)	promoter-TSS (NM_001163284)	-819.0	NM_173399	230119.0	Mm.44222	NM_173399	ENSMUSG00000049657	Zbtb5	5930421I10|9430083K24Rik|AI646847|mKIAA0354	zinc finger and BTB domain containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-121630177-2	chr3	121630077	121630277	+	567.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13308.0	NR_036456	100503044.0	Mm.65320	NM_176992	ENSMUSG00000044522	A730020M07Rik	-	RIKEN cDNA A730020M07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-138157112-2	chr1	138157012	138157212	+	839.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001268286, intron 2 of 28)	intron (NM_001268286, intron 2 of 28)	18014.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53051082-2	chr4	53050982	53051182	+	719.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 34 of 49)	intron (NM_013454, intron 34 of 49)	39202.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-128298047-4	chr7	128297923	128298123	+	876.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_145590, exon 1 of 13)	exon (NM_145590, exon 1 of 13)	108.0	NM_145590	233913.0	Mm.220880	NM_145590	ENSMUSG00000030780	BC017158	-	cDNA sequence BC017158	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-123934526-4	chr1	123934418	123934618	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199021, intron 1 of 25)	intron (NM_199021, intron 1 of 25)	111041.0	NM_199021	269109.0	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5637709-2	chr17	5637609	5637809	+	722.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	C-rich|Low_complexity|Low_complexity	145109.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-44918214-2	chr13	44918114	44918314	+	552.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205043, intron 17 of 17)	intron (NM_001205043, intron 17 of 17)	83882.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-133131159-4	chr1	133131064	133131264	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133819)	promoter-TSS (NM_133819)	-2.0	NM_133819	108954.0	Mm.293628	NM_133819	ENSMUSG00000046062	Ppp1r15b	1810033K10Rik|AI606441|C530022L24Rik|CReP	protein phosphatase 1, regulatory (inhibitor) subunit 15b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-16373980-3	chr14	16373881	16374081	+	755.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009409, intron 1 of 35)	intron (NM_009409, intron 1 of 35)	8775.0	NM_009409	21974.0	Mm.130362	NM_009409	ENSMUSG00000017485	Top2b	D230016L12Rik|Top-2	topoisomerase (DNA) II beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-52817338-4	chr1	52817223	52817423	+	850.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008384, intron 1 of 5)	CpG	365.0	NM_008384	16329.0	Mm.917	NM_008384	ENSMUSG00000026102	Inpp1	2300002C06Rik|AV137389	inositol polyphosphate-1-phosphatase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-97922577-4	chr16	97922478	97922678	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_174847)	promoter-TSS (NM_174847)	55.0	NM_174847	207781.0	Mm.1465	NM_174847	ENSMUSG00000045975	C2cd2	5730563M15|5830404H04Rik|AI314146|AI449533|BF168443|ORF25|mKIAA4045	C2 calcium-dependent domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-83731351-1	chr13	83731251	83731451	+	544.0	f1_c57bl6.idr	intron (NR_152244, intron 2 of 4)	CpG	-1142.0	NR_152246	320203.0	Mm.245636	NM_177100	ENSMUSG00000050334	C130071C03Rik	2810449C10Rik|ECONEXIN|EyeLinc1|Visc-1	RIKEN cDNA C130071C03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-29854623-4	chr5	29854519	29854719	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-118683.0	NR_028426	332993.0	Mm.473746	NR_028426		Gm5129	EG332993	predicted gene 5129	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116011798-2	chr11	116011698	116011898	+	941.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016905, intron 1 of 7)	intron (NM_016905, intron 1 of 7)	921.0	NM_016905	14635.0	Mm.2820	NM_016905	ENSMUSG00000020766	Galk1	AA409894|GALK|Gk|Glk|Glk1	galactokinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-51525706-2	chr8	51525606	51525806	+	670.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR41|LTR|ERV1	-830905.0	NR_151738	330767.0	Mm.246790	NR_151738	ENSMUSG00000110013	1190028D05Rik	-	RIKEN cDNA 1190028D05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-88187974-4	chr11	88187839	88188039	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001172099, intron 6 of 9)	intron (NM_001172099, intron 6 of 9)	-6167.0	NM_001291270	64656.0	Mm.168680	NM_024174	ENSMUSG00000023723	Mrps23	D11Bwg1153e|MRP-S23|Rpms23|S23mt	mitochondrial ribosomal protein S23	protein-coding	3.49167214370796	3.84573627773895	4.71169429713014	2.84454745498801	3.91340665041616	4.4226178807922	4.81883781220778	4.10499962806859	0.61673123268949	0.231307300154019	0.725747702762793
Merged-chr16-22070735-3	chr16	22070632	22070832	+	851.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183029, intron 10 of 15)	intron (NM_183029, intron 10 of 15)	61248.0	NM_001357424	75826.0	Mm.297431	NM_029457	ENSMUSG00000022855	Senp2	2310007L05Rik|4930538C18Rik|AI646780|AW554757|Smt3ip2|SuPr-1|mKIAA1331	SUMO/sentrin specific peptidase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-81058360-4	chr5	81058259	81058459	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198702, intron 1 of 27)	intron (NM_198702, intron 1 of 27)	36766.0	NM_198702	319387.0	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	4.34910237111492	3.74384615895262	3.95206353315076	3.97984436212002	4.09942093742126	4.51633135974951	5.59661682071352	4.78592178542781	1.05715606276753	0.0162280191356467	0.153471182545577
Merged-chr2-59286512-4	chr2	59286336	59286536	+	892.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 3 of 20)	intron (NM_175464, intron 3 of 20)	100246.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31434222-5	chr14	31434184	31434384	+	911.68335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011894, intron 1 of 8)	intron (NM_011894, intron 1 of 8)	1816.0	NM_011894	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-38302908-2	chr15	38302808	38303008	+	656.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2197.0	NM_001289471	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-145209486-3	chr4	145209411	145209611	+	805.964294	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-14506.0	NM_001276465	230895.0	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-27271531-2	chr3	27271431	27271631	+	571.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45546.0	NM_009425	22035.0	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-17691470-4	chr12	17691342	17691542	+	916.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016677, intron 1 of 3)	CpG	633.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-129859860-3	chr7	129859764	129859964	+	952.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-102301.0	NR_046077	100043150.0	Mm.334264	NR_046077	ENSMUSG00000108504	Gm4265	-	predicted gene 4265	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-30415435-2	chr16	30415377	30415577	+	793.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-26947.0	NM_001128096	224088.0	Mm.8924	NM_001128094	ENSMUSG00000022533	Atp13a3	AU022875|Gm1745|Gm541|Gm542	ATPase type 13A3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-36786799-1	chr17	36786699	36786899	+	897.0	f1_balb.idr	Intergenic	B3|SINE|B2	13889.0	NM_177637	224761.0	Mm.246584	NM_177637	ENSMUSG00000037246	H2-M10.5	6.9H	histocompatibility 2, M region locus 10.5	protein-coding	-0.314878408013431	-0.448321575568983	0.320659778272384	-0.455633967241645	-0.182888134769636	-0.447391305355741	-0.451538590487471	-0.455077522972421	-1.91819222290019	0.454172665991518	1
Merged-chr10-128922681-2	chr10	128922581	128922781	+	725.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_015740, exon 2 of 4)	exon (NM_015740, exon 2 of 4)	843.0	NM_015740	14533.0	Mm.30118	NM_015740	ENSMUSG00000090247	Bloc1s1	AI839753|BLOS1|Gcn5l1	biogenesis of lysosomal organelles complex-1, subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117293081-2	chr8	117292981	117293181	+	588.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	ID_B1|SINE|B4	36062.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-103914398-4	chr3	103914241	103914441	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001356556, exon 1 of 8)	5' UTR (NM_001356556, exon 1 of 8)	221.0	NM_172684	229675.0	Mm.29366	NM_172684	ENSMUSG00000044098	Rsbn1	C230004D03Rik|E330004N01|KDM9|Rosbin|Rsbn|Rsbp|mKIAA3002	rosbin, round spermatid basic protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-124750288-3	chr8	124750157	124750357	+	785.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081120, intron 1 of 1)	intron (NM_001081120, intron 1 of 1)	1552.0	NM_001081120	69627.0	Mm.271600	NM_001081120	ENSMUSG00000043068	Fam89a	2310031A18Rik	family with sequence similarity 89, member A	protein-coding	1.82692315030497	1.90498570495913	1.17355635489562	1.14724568557456	2.27864229204382	2.75992576414532	1.85212793493769	2.91758105047246	2.43617647915431	0.0173106492675933	0.161335968342246
Merged-chr9-58588863-4	chr9	58588766	58588966	+	996.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151824, intron 1 of 7)	intron (NR_151824, intron 1 of 7)	6626.0	NM_001357751	20320.0	Mm.15125	NM_009145	ENSMUSG00000032336	Nptn	AW554172|SDR-1|Sdfr1	neuroplastin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-95189024-2	chr9	95188924	95189124	+	789.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177909, intron 14 of 15)	MIRb|SINE|MIR	218246.0	NM_018763	54371.0	Mm.212446	NM_018763	ENSMUSG00000033350	Chst2	AI428561|AW121776|C130041E03Rik|Chts2|GST-2|GlcNAc6ST|Gn6st	carbohydrate sulfotransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-19688279-2	chr6	19688179	19688379	+	556.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4B|LINE|L1	132937.0	NR_105789	102465192.0		NR_105789	ENSMUSG00000099149	Mir6370	Gm27480|mmu-mir-6370	microRNA 6370	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-81358069-2	chr16	81357969	81358169	+	826.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113208, intron 1 of 17)	intron (NM_001113208, intron 1 of 17)	157372.0	NM_010954	17968.0	Mm.433941	NM_010954	ENSMUSG00000022762	Ncam2	Ncam-2|Ocam|RNCAM	neural cell adhesion molecule 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-65037714-4	chr12	65037600	65037800	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177806, intron 1 of 13)	intron (NM_177806, intron 1 of 13)	1366.0	NM_177806	328110.0	Mm.283339	NM_177806	ENSMUSG00000035597	Prpf39	Srcs1	pre-mRNA processing factor 39	protein-coding	2.34800260181145	3.83033823722758	2.5611862658347	3.33822046360839	3.03631914494471	3.72379468442155	3.29192440931693	3.19113472466951	0.289275531692942	0.654540409287664	0.987655214718713
Merged-chr7-141064259-2	chr7	141064159	141064359	+	808.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_177897, intron 2 of 19)	intron (NM_177897, intron 2 of 19)	2985.0	NM_177897	330671.0	Mm.133741	NM_177897	ENSMUSG00000055629	B4galnt4	BC038881|Gm1095|beta4GalNAcT4	beta-1,4-N-acetyl-galactosaminyl transferase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-54999206-4	chr12	54999121	54999321	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12885.0	NM_013815	217578.0	Mm.479583	NM_013815	ENSMUSG00000035021	Baz1a	Acf1|B930060C03|BC065123|Gtl5|Wcrf180|cbp146	bromodomain adjacent to zinc finger domain 1A	protein-coding	0.705273065076593	0.967734465347174	1.30441337257812	1.15010583054615	0.543026335548763	0.576032265035656	0.56543016817173	1.44690917109877	-0.831179094771699	0.605590273437779	0.974576632476413
Merged-chr19-55820430-4	chr19	55820322	55820522	+	977.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_138565, intron 4 of 15)	intron (NR_138565, intron 4 of 15)	-74899.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-49684164-4	chr13	49684056	49684256	+	981.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172015, intron 1 of 33)	intron (NM_172015, intron 1 of 33)	2026.0	NM_172015	105148.0	Mm.21118	NM_172015	ENSMUSG00000037851	Iars	2510016L12Rik|AI327140|AU044614|E430001P04Rik|ILRS	isoleucine-tRNA synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55895593-2	chr19	55895493	55895693	+	853.5	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001142924, exon 1 of 12)	5' UTR (NM_001142924, exon 1 of 12)	272.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-16200442-3	chr19	16200338	16200538	+	760.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008139, intron 1 of 6)	intron (NM_008139, intron 1 of 6)	36340.0	NR_033228	595139.0	Mm.405662	NR_033228		E030024N20Rik	9030417F11Rik|Ppia-ps8	peptidylprolyl isomerase A pseudogene 8	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-134758661-4	chr4	134758571	134758771	+	995.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145554, intron 2 of 8)	intron (NM_145554, intron 2 of 8)	9333.0	NM_145554	100017.0	Mm.27486	NM_145554	ENSMUSG00000037295	Ldlrap1	AA691260|ARH2|Arh|Arh1|FHCB1|FHCB2	low density lipoprotein receptor adaptor protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-105711641-3	chr5	105711564	105711764	+	862.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178701, intron 1 of 2)	intron (NM_178701, intron 1 of 2)	10854.0	NM_178701	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	1.74291057314269	1.53849641815261	1.31686924269941	1.83632860488865	2.01707139196788	1.54863296931869	2.01044698512987	1.29474529851932	0.430144283260424	0.68964706591141	0.996533206832645
Merged-chr7-43661474-2	chr7	43661374	43661574	+	873.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	-1313.0	NM_031181	83382.0	Mm.157702	NM_031181	ENSMUSG00000030474	Siglece	Cd170|Siglec12|Siglec5|Siglec9|Siglecl1|mSiglec-E	sialic acid binding Ig-like lectin E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95317506-2	chr3	95317406	95317606	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029789, intron 1 of 10)	intron (NM_029789, intron 1 of 10)	-1324.0	NM_001320492	76893.0	Mm.181009	NM_029789	ENSMUSG00000015714	Cers2	0610013I17Rik|AI225939|Lass2|TRH3	ceramide synthase 2	protein-coding	-1.06997269762433	-1.30473905204845	-1.3145270772132	-1.32256725251374	-1.06385251204029	-1.30261794616352	-1.3123112828633	-1.32112806497905	0.0394047164033882	0.991001358494878	1
Merged-chr18-60735388-2	chr18	60735288	60735488	+	560.266663	f1_balb.idr|f1_c57bl6.idr	intron (NM_001348146, intron 1 of 6)	intron (NM_001348146, intron 1 of 6)	-2247.0	NM_001348102	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-20247211-1	chr11	20247111	20247311	+	743.75	f0_balb.idr	intron (NM_172260, intron 1 of 6)	intron (NM_172260, intron 1 of 6)	2213.0	NM_172260	216543.0	Mm.260314	NM_172260	ENSMUSG00000044066	Cep68	6030463E10Rik|AI481761|BC027174|Kiaa0582	centrosomal protein 68	protein-coding	0.444643991462158	0.306037575691094	0.297015601161447	0.479233291339162	0.927103727580758	0.308056678435008	0.505423874134477	1.41688921602676	2.96244614680986	0.10266188787436	1
Merged-chr15-58246564-2	chr15	58246464	58246664	+	554.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31672.0	NM_026346	67731.0	Mm.25683	NM_026346	ENSMUSG00000022358	Fbxo32	4833442G10Rik|AI430017|ATROGIN1|Gm20361|MAFbx	F-box protein 32	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-134933563-2	chr5	134933463	134933663	+	594.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_024479, exon 3 of 6)	exon (NM_024479, exon 3 of 6)	1039.0	NM_001359537	79565.0	Mm.34235	NM_024479	ENSMUSG00000040557	Mettl27	AW492986|BC002286|Wbscr27	methyltransferase like 27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-172513123-4	chr1	172513010	172513210	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8020.0	NM_027972	71870.0	Mm.78373	NM_027972	ENSMUSG00000026546	Cfap45	1700028D05Rik|Ccdc19|Nesg1	cilia and flagella associated protein 45	protein-coding	6.47399409728206	5.90701429006103	5.8367889039889	6.05884245455416	5.96772482811522	5.21834161007667	5.67855548753082	5.14014821349349	-0.608189366002433	0.027757717141632	0.225126469309577
Merged-chr12-116404642-2	chr12	116404550	116404750	+	687.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133762)	promoter-TSS (NM_133762)	511.0	NR_028421	319545.0	Mm.390543	NR_028421	ENSMUSG00000112980	D430020J02Rik	-	RIKEN cDNA D430020J02 gene	ncRNA	1.31409947695798	1.39771253341475	0.679555031325467	1.0298964578702	1.11143146388935	1.73901642463068	0.682416587769305	0.671228675606142	0.0292855134852816	0.984433102478401	0.998431161219273
Merged-chr8-56293450-4	chr8	56293350	56293550	+	999.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1102.0	NM_008278	15446.0	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-116332218-2	chr7	116332118	116332318	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026533, intron 5 of 5)	intron (NM_026533, intron 5 of 5)	1972.0	NM_026533	68052.0	Mm.14798	NM_026533	ENSMUSG00000090862	Rps13	2700063M04Rik	ribosomal protein S13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-83563991-4	chr17	83563892	83564092	+	998.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49659.0	NM_001159529	20463.0	Mm.30072	NM_009187	ENSMUSG00000024248	Cox7a2l	COX7AR|COX7RP|EB1|SIG-81|SIG81|Silg81	cytochrome c oxidase subunit VIIa polypeptide 2-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-4997424-2	chr17	4997324	4997524	+	929.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 1 of 19)	intron (NM_001085355, intron 1 of 19)	2350.0	NM_001085355	239985.0	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-14861430-2	chr4	14861330	14861530	+	639.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-2789.0	NM_028264	72519.0	Mm.279158	NM_028264	ENSMUSG00000028221	Tmem55a	2610319K07Rik|AI315591|AV001360|Pip4p2	transmembrane protein 55A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-31907156-2	chr16	31907054	31907254	+	596.5	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-26697.0	NM_172822	239827.0	Mm.440388	NM_172822	ENSMUSG00000045625	Pigz	F630022B06Rik	phosphatidylinositol glycan anchor biosynthesis, class Z	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-4764760-2	chr17	4764660	4764860	+	828.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	129780.0	NR_130984	75117.0	Mm.429393	NR_130984		4930517M08Rik	-	RIKEN cDNA 4930517M08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21936931-4	chr9	21936831	21937031	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290299)	promoter-TSS (NM_001290299)	-79.0	NM_001290299	235044.0	Mm.277521	NM_144935	ENSMUSG00000040563	Plppr2	Lppr2|PRG-4	phospholipid phosphatase related 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-115689292-1	chr8	115689192	115689392	+	573.0	f0_balb.idr	Intergenic	Intergenic	17602.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-88621966-2	chr10	88621866	88622066	+	783.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-16814.0	NM_175418	109272.0	Mm.147208	NM_175418	ENSMUSG00000020061	Mybpc1	8030451F13Rik	myosin binding protein C, slow-type	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99383666-2	chr15	99383566	99383766	+	593.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4|SINE|ID	-9281.0	NM_026669	110213.0	Mm.16769	NM_026669	ENSMUSG00000023010	Tmbim6	5031406P05Rik|Bi1|Tegt	transmembrane BAX inhibitor motif containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-143963139-2	chr2	143963039	143963239	+	606.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_024281, intron 9 of 23)	intron (NM_024281, intron 9 of 23)	47808.0	NM_019771	56431.0	Mm.28919	NM_019771	ENSMUSG00000015932	Dstn	2610043P17Rik|ADF|AU042046|Dsn|corn1|sid23p	destrin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-23125426-4	chr19	23125322	23125522	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15804.0	NM_010638	16601.0	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|Gm9971	Kruppel-like factor 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5272299-2	chr19	5272199	5272399	+	710.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153129, intron 1 of 23)	intron (NM_153129, intron 1 of 23)	820.0	NM_153129	107975.0	Mm.234923	NM_153129	ENSMUSG00000024855	Pacs1	AI325977	phosphofurin acidic cluster sorting protein 1	protein-coding	-2.05752322593321	-2.15521190974092	-2.16307242109104	-2.16952927915413	-2.17938029103484	-2.15350850414045	-2.16129297361887	-2.16837350464794	-0.683654500252594	0.846597994014493	1
Merged-chr3-65963004-2	chr3	65962904	65963104	+	562.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4755.0	NM_001355432	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-84315201-2	chr10	84315101	84315301	+	620.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	125270.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124904248-4	chr6	124904142	124904342	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008479)	TTS (NM_008479)	7463.0	NM_008479	16768.0	Mm.4528	NM_008479	ENSMUSG00000030124	Lag3	CD223|LAG-3|Ly66	lymphocyte-activation gene 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101226341-4	chr11	101226233	101226433	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007970, intron 1 of 20)	CpG	130.0	NM_007970	14055.0	Mm.5027	NM_007970	ENSMUSG00000006920	Ezh1	ENX-2	enhancer of zeste 1 polycomb repressive complex 2 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-124690573-4	chr2	124690464	124690664	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	36983.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-50057600-2	chr12	50057500	50057700	+	730.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-576738.0	NR_045472	69054.0	Mm.417838	NR_045472	ENSMUSG00000100844	1810007C17Rik	-	RIKEN cDNA 1810007C17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-86234019-4	chr1	86233936	86234136	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027456, intron 19 of 20)	intron (NM_027456, intron 19 of 20)	-69185.0	NM_145222	227327.0	Mm.86467	NM_145222	ENSMUSG00000079445	B3gnt7	C330001H22Rik|beta-3GnT7	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106779552-4	chr11	106779476	106779676	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027785)	promoter-TSS (NR_027785)	-39.0	NM_015810	50776.0	Mm.859	NM_015810	ENSMUSG00000020718	Polg2	mtPolB|p55|polG-beta	polymerase (DNA directed), gamma 2, accessory subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-94392757-1	chr6	94392657	94392857	+	664.0	f1_c57bl6.idr	Intergenic	B3|SINE|B2	-107557.0	NM_026255	67582.0	Mm.280725	NM_026255	ENSMUSG00000045100	Slc25a26	4930433D19Rik|4933433F13Rik|AW557176|D6Bwg0781e|Slc25a6	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139366033-4	chr5	139365942	139366142	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028469, intron 2 of 4)	intron (NM_028469, intron 2 of 4)	3703.0	NR_029768	723898.0		NR_029768	ENSMUSG00000065593	Mir339	Mirn339|mir-339|mmu-mir-339	microRNA 339	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122709420-1	chr5	122709320	122709520	+	589.0	f1_balb.idr	intron (NM_001310718, intron 1 of 10)	B2_Mm2|SINE|B2	1876.0	NM_001310718	18438.0	Mm.290884	NM_011026	ENSMUSG00000029470	P2rx4	AI504491|AW555605|D5Ertd444e|P2X4	purinergic receptor P2X, ligand-gated ion channel 4	protein-coding	0.451720597177317	-0.165921541016015	-0.172496413078574	-0.177615983784823	-0.184923318000166	-0.16444866780295	0.872796101503844	-0.176718591214555	1.08407810465247	0.654509962311617	1
Merged-chr5-31023239-2	chr5	31023139	31023339	+	702.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14-int|LTR|ERV1	24840.0	NM_177870	330064.0	Mm.205463	NM_177870	ENSMUSG00000006641	Slc5a6	E430023I20	solute carrier family 5 (sodium-dependent vitamin transporter), member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-37241761-4	chr12	37241665	37241865	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_178767, exon 1 of 13)	5' UTR (NM_178767, exon 1 of 13)	126.0	NM_178767	319660.0	Mm.485540	NM_178767	ENSMUSG00000050103	Agmo	A530016O06Rik|AI790538|Tmem195	alkylglycerol monooxygenase	protein-coding	8.1192143923549	8.19483373533116	8.07559222391063	7.77031402476188	7.9885169721428	7.60120051916941	8.1106022531692	7.34866602950044	-0.260458754774705	0.119320518704212	0.541728399374294
Merged-chr14-103017378-2	chr14	103017278	103017478	+	762.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045657, intron 2 of 2)	intron (NR_045657, intron 2 of 2)	16425.0	NR_045657	71264.0	Mm.399572	NR_045657	ENSMUSG00000114980	4933432I03Rik	-	RIKEN cDNA 4933432I03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-135259259-4	chr1	135259182	135259382	+	889.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163131)	promoter-TSS (NM_001163131)	-810.0	NM_007921	13710.0	Mm.441439	NM_007921	ENSMUSG00000003051	Elf3	ESE-1|ESX|jen	E74-like factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-149705541-4	chr4	149705443	149705643	+	901.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3914.0	NM_001029837	18707.0	Mm.229108	NM_008840	ENSMUSG00000039936	Pik3cd	2410099E07Rik|2610208K16Rik|AW545373|p110delta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding	2.81492780057305	3.48305747981245	2.84908010249359	2.53181144125967	2.64823572380102	3.26918526474645	3.24641742446994	2.24693955852029	-0.0868515317263063	0.900276695749041	0.998431161219273
Merged-chr3-65435533-2	chr3	65435433	65435633	+	649.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42980.0	NM_026155	67437.0	Mm.232728	NM_026155	ENSMUSG00000027828	Ssr3	0610038P07Rik|AL022999|AU022074|AW553833|TRAPG	signal sequence receptor, gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-9382029-4	chr13	9381936	9382136	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081426, intron 1 of 36)	intron (NM_001081426, intron 1 of 36)	105511.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-78900190-1	chr8	78900090	78900290	+	547.0	f0_c57.idr	Intergenic	Intergenic	-79038.0	NM_030145	78651.0	Mm.28694	NM_030145	ENSMUSG00000031683	Lsm6	1500031N17Rik|2410088K19Rik|AI747288	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6046124-2	chr19	6046040	6046240	+	805.25	f0_c57.idr|f1_c57bl6.idr	promoter-TSS (NM_028769)	promoter-TSS (NM_028769)	-436.0	NM_028769	74126.0	Mm.149870	NM_028769	ENSMUSG00000024807	Syvn1	1200010C09Rik|AW211966|C85322|D530017H19Rik|Hrd1	synovial apoptosis inhibitor 1, synoviolin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-156040846-4	chr1	156040755	156040955	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358627)	promoter-TSS (NM_001358627)	-6.0	NM_001160181	240832.0	Mm.253335	NM_022329	ENSMUSG00000050565	Tor1aip2	1110020D10Rik|15kDa|A130072J07|AA103493|AW060462|AW610675|C77739|Ifrg15|Lull1	torsin A interacting protein 2	protein-coding	5.64938527339042	6.08909952869806	4.67078577795981	5.85266715281284	5.4160066391397	5.40966962370431	5.14366576045322	5.41530331796246	-0.347273394011241	0.270263578055058	0.773403341430574
Merged-chr11-101576826-2	chr11	101576726	101576926	+	584.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_152788, intron 21 of 22)	intron (NR_152788, intron 21 of 22)	-5416.0	NM_001359326	217203.0	Mm.280559	NM_144830	ENSMUSG00000034947	Tmem106a	0610008L10Rik|AI043106|BC022145	transmembrane protein 106A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-20836200-3	chr14	20836095	20836295	+	930.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008873)	promoter-TSS (NM_008873)	-467.0	NM_008873	18792.0	Mm.4183	NM_008873	ENSMUSG00000021822	Plau	u-PA|uPA	plasminogen activator, urokinase	protein-coding	2.00033650455563	1.38930891479827	2.35415950649478	1.31998989373636	2.18013655205004	1.14618162501565	1.98338512373852	1.66437633262204	-0.114340418512327	0.917690694356885	0.998431161219273
Merged-chr15-59837772-2	chr15	59837672	59837872	+	598.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42813.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-46062041-4	chr11	46061945	46062145	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291890, intron 2 of 22)	intron (NM_001291890, intron 2 of 22)	6061.0	NM_001291891	11492.0	Mm.89940	NM_009616	ENSMUSG00000011256	Adam19	AL024287|MADDAM|MTLNB|Mltnb	a disintegrin and metallopeptidase domain 19 (meltrin beta)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28207725-4	chr17	28207634	28207834	+	981.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027185)	promoter-TSS (NM_027185)	-44.0	NM_027185	23853.0	Mm.204731	NM_027185	ENSMUSG00000002257	Def6	2410003F05Rik|6430538D02Rik|AV094905|Ibp|Slat|Slat2|Slat6	differentially expressed in FDCP 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-16380325-4	chr14	16380232	16380432	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009409, intron 1 of 35)	intron (NM_009409, intron 1 of 35)	15126.0	NM_009409	21974.0	Mm.130362	NM_009409	ENSMUSG00000017485	Top2b	D230016L12Rik|Top-2	topoisomerase (DNA) II beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-110618615-4	chr8	110618555	110618755	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146216)	promoter-TSS (NM_146216)	88.0	NR_151675	234729.0	Mm.274894	NM_146216	ENSMUSG00000010936	Vac14	AA959718|BC032215|D8Wsu151e|Tax1bp2|Trx|ingls	Vac14 homolog (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-69082393-2	chr8	69082293	69082493	+	570.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153054, intron 1 of 16)	B3A|SINE|B2	-6343.0	NM_007509	11966.0	Mm.249096	NM_007509	ENSMUSG00000006273	Atp6v1b2	AI194269|AI790362|Atp6b2|HO57|R74844	ATPase, H+ transporting, lysosomal V1 subunit B2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-152808737-4	chr2	152808674	152808874	+	786.729126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009743, intron 2 of 2)	RLTR31D_MM|LTR|ERVK	19715.0	NR_149254	12048.0	Mm.238213	NM_009743	ENSMUSG00000007659	Bcl2l1	Bcl(X)L|Bcl-XL|Bcl2l|BclX|bcl-x|bcl2-L-1	BCL2-like 1	protein-coding	-0.696163854512474	-0.944158366292128	-0.954309940727346	-0.956421472985335	-0.959397431369417	-0.941573008238724	-0.953387951697818	-0.421153821691454	1.09996124479401	0.728260505401646	1
Merged-chr10-81498112-4	chr10	81497964	81498164	+	907.68335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010102, exon 1 of 1)	3' UTR (NM_010102, exon 1 of 1)	-1701.0	NM_134009	103425.0	Mm.302791	NM_134009	ENSMUSG00000020238	Ncln	3100002P13Rik|AW120537	nicalin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116612658-2	chr11	116612558	116612758	+	625.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172572, intron 1 of 18)	MIRb|SINE|MIR	11594.0	NM_001167680	217344.0	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21289220-2	chr9	21289120	21289320	+	633.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_009878, exon 2 of 2)	exon (NM_009878, exon 2 of 2)	-1251.0	NM_145416	215194.0	Mm.290690	NM_145416	ENSMUSG00000035047	Kri1	-	KRI1 homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-119027331-4	chr14	119027228	119027428	+	942.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081252, intron 26 of 38)	intron (NM_001081252, intron 26 of 38)	-71637.0	NR_153786	102635192.0	Mm.398079	NR_153786		Gm16835	-	predicted gene, 16835	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-37390502-4	chr6	37390398	37390598	+	764.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178661, intron 1 of 11)	intron (NM_178661, intron 1 of 11)	51650.0	NM_178661	208647.0	Mm.169929	NM_178661	ENSMUSG00000038648	Creb3l2	BBF2H7|C530025K05Rik|SCIRR69	cAMP responsive element binding protein 3-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5769547-2	chr17	5769447	5769647	+	786.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29110.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-84936643-4	chr2	84936546	84936746	+	962.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021398)	promoter-TSS (NM_021398)	0.0	NM_021398	58207.0	Mm.290729	NM_021398	ENSMUSG00000027074	Slc43a3	Eeg1|SEEEG-1	solute carrier family 43, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-120256066-4	chr1	120255963	120256163	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085409, intron 2 of 5)	intron (NM_001085409, intron 2 of 5)	9217.0	NM_133186	68428.0	Mm.181033	NM_133186	ENSMUSG00000026389	Steap3	1010001D01Rik|Tsap6|pHyde	STEAP family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-78924824-3	chr14	78924708	78924908	+	878.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027906, intron 4 of 44)	intron (NM_027906, intron 4 of 44)	75630.0	NM_173758	219189.0	Mm.159651	NM_027906	ENSMUSG00000058997	Vwa8	1300010F03Rik|4932416F07Rik|AI957255|Kiaa0564|mKIAA0564	von Willebrand factor A domain containing 8	protein-coding	0.915824815841072	0.995597656460429	0.970610532200307	1.55578483238116	1.73774261349028	2.10276940693679	2.02317301955752	2.58875109771677	3.43395188229811	0.00713822171525519	0.0859952458049692
Merged-chr7-28299394-2	chr7	28299294	28299494	+	799.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007866, intron 3 of 8)	intron (NM_007866, intron 3 of 8)	2391.0	NM_007866	13389.0	Mm.12896	NM_007866	ENSMUSG00000003436	Dll3	pu|pudgy	delta like canonical Notch ligand 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-65305089-3	chr18	65305035	65305235	+	812.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001037294, exon 5 of 13)	exon (NM_001037294, exon 5 of 13)	56274.0	NR_029600	387231.0		NR_029600	ENSMUSG00000065402	Mir122	Mir122a|Mirn122a|mir-122|mmu-mir-122	microRNA 122	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-99188939-1	chr11	99188839	99189039	+	1000.0	f1_c57bl6.idr	Intergenic	Intergenic	-33862.0	NM_007719	12775.0	Mm.2932	NM_007719	ENSMUSG00000037944	Ccr7	CC-CKR-7|CCR-7|CD197|Cdw197|Cmkbr7|EBI1|Ebi1h	chemokine (C-C motif) receptor 7	protein-coding	1.12349192826862	0.717091243662395	1.36161755783299	1.31539334342506	0.679304835267292	1.75968798286502	0.706990684973721	1.19996271834361	0.106146027297471	0.943096612732252	0.998431161219273
Merged-chr2-167749216-2	chr2	167749116	167749316	+	790.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58039.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-128000772-3	chr7	128000701	128000901	+	866.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F1|SINE|Alu	-3577.0	NM_001079932	434246.0	Mm.389924	NM_001079932	ENSMUSG00000042828	Trim72	BC067209|MG53	tripartite motif-containing 72	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-115617021-2	chr8	115616921	115617121	+	744.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	89873.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-57463018-4	chr8	57462922	57463122	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009136, intron 1 of 2)	intron (NM_009136, intron 1 of 2)	7099.0	NM_009136	20284.0	Mm.12886	NM_009136	ENSMUSG00000031610	Scrg1	AW124307	scrapie responsive gene 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-65516013-4	chr3	65515908	65516108	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12439.0	NM_178892	99929.0	Mm.246398	NM_178892	ENSMUSG00000034640	Tiparp	ARTD14|AW558171|PARP7	TCDD-inducible poly(ADP-ribose) polymerase	protein-coding	1.65441717095261	2.0297033565073	1.80186933232215	1.12465736137002	2.60765958048221	2.1881539584524	2.83661111660396	1.1290348342635	1.60701482445152	0.13325946951234	0.570764692507331
Merged-chr15-84981722-2	chr15	84981622	84981822	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033273, intron 1 of 9)	intron (NM_001033273, intron 1 of 9)	6249.0	NM_001033273	223739.0	Mm.323925	NM_001033273	ENSMUSG00000036046	5031439G07Rik	AW554572|mKIAA0930	RIKEN cDNA 5031439G07 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-122150083-3	chr2	122149980	122150180	+	810.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_009735, intron 1 of 3)	intron (NM_009735, intron 1 of 3)	2393.0	NM_009735	12010.0	Mm.163	NM_009735	ENSMUSG00000060802	B2m	Ly-m11|beta2-m|beta2m	beta-2 microglobulin	protein-coding	0.947179898309074	1.98153340967924	2.39328207699736	0.981487848633255	1.75797997517795	1.03140228441766	2.33218647650094	1.73083102124795	0.128480109417252	0.91916183598081	0.998431161219273
Merged-chr2-25180016-2	chr2	25179916	25180116	+	827.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025980)	promoter-TSS (NM_025980)	-742.0	NM_025980	67122.0	Mm.46539	NM_025980	ENSMUSG00000078202	Nrarp	2700054M22Rik	Notch-regulated ankyrin repeat protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72362521-4	chr6	72362428	72362628	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001331173)	promoter-TSS (NM_001331173)	-96.0	NM_001331173	66510.0	Mm.170023	NM_025607	ENSMUSG00000055850	Rnf181	1700047F16Rik|2500002L14Rik|6230415N01Rik|C77350	ring finger protein 181	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153199307-4	chr2	153199191	153199391	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133847, intron 13 of 17)	intron (NM_133847, intron 13 of 17)	26150.0	NM_198617	241732.0	Mm.277243	NM_198617	ENSMUSG00000074671	Tspyl3	AW212607|Gm36	TSPY-like 3	protein-coding	4.74719958054036	4.60849195890341	5.7620379819341	5.40018028163097	5.84068763171661	5.93663417944117	6.01505952374631	5.94500500474944	0.819640350383024	0.00574877959730835	0.0744322204408333
Merged-chr5-87143314-4	chr5	87143215	87143415	+	920.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4A|LINE|L1	-2975.0	NM_009467	22238.0	Mm.291575	NM_009467	ENSMUSG00000054630	Ugt2b5	AI118071|M-1|Udpgt-3|Udpgt2b5|Ugt2b17	UDP glucuronosyltransferase 2 family, polypeptide B5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-86466088-4	chr1	86465982	86466182	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	39753.0	NM_027966	71863.0	Mm.179627	NM_027966	ENSMUSG00000036574	Tex44	1700019O17Rik	testis expressed 44	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-77772966-4	chr15	77772881	77773081	+	911.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022410, intron 25 of 40)	G-rich|Low_complexity|Low_complexity	-15971.0	NM_001357895	239552.0	Mm.125650	NM_001081970	ENSMUSG00000056656	Apol8	9830006J20Rik|APOL-II|Apol2	apolipoprotein L 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-72896862-2	chr5	72896762	72896962	+	684.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17500.0	NM_001113423	75991.0	Mm.121285	NM_153567	ENSMUSG00000036087	Slain2	5033405K12Rik|8030444K12Rik|AI596370	SLAIN motif family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45701557-2	chr7	45701457	45701657	+	752.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009800, intron 3 of 8)	intron (NM_009800, intron 3 of 8)	1590.0	NM_009800	12348.0	Mm.27736	NM_009800	ENSMUSG00000003273	Car11	Ca11	carbonic anhydrase 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-55097873-4	chr11	55097731	55097931	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010299)	promoter-TSS (NM_010299)	-154.0	NM_010299	14667.0	Mm.287807	NM_010299	ENSMUSG00000000594	Gm2a	AA408702|AW215435|GM2-AP|SAP-3	GM2 ganglioside activator protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-100549376-1	chr5	100549276	100549476	+	799.0	f1_c57bl6.idr	Intergenic	Intergenic	22829.0	NM_139198	231507.0	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129189794-4	chr4	129189702	129189902	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029036)	promoter-TSS (NM_029036)	7.0	NM_134151	107271.0	Mm.145488	NM_134151	ENSMUSG00000028811	Yars	AL024047|AU018965	tyrosyl-tRNA synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-86495677-2	chr6	86495577	86495777	+	807.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7450.0	NR_040292	381792.0	Mm.333223	NR_040292	ENSMUSG00000101655	2310040G24Rik	-	RIKEN cDNA 2310040G24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-117115332-6	chr5	117115258	117115458	+	953.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122666, intron 1 of 12)	intron (NM_001122666, intron 1 of 12)	635.0	NM_001122666	71954.0	Mm.34456	NM_178622	ENSMUSG00000066900	Suds3	2400003N08Rik|2410008L21Rik|AU067672|mSds3	suppressor of defective silencing 3 homolog (S. cerevisiae)	protein-coding	1.61250284126096	1.93759703143819	1.8731606009625	2.04078993280524	1.85438723381349	2.1921449446794	1.75040181449781	1.16236318911751	-0.22848892189465	0.826785226188267	0.998431161219273
Merged-chr1-131934737-4	chr1	131934644	131934844	+	889.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_175294, exon 7 of 7)	3' UTR (NM_175294, exon 7 of 7)	24286.0	NM_175294	98415.0	Mm.246869	NM_175294	ENSMUSG00000026434	Nucks1	2700010L10Rik|8430423A01Rik|AI647518|C78391|Nucks	nuclear casein kinase and cyclin-dependent kinase substrate 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-95836198-4	chr16	95836119	95836319	+	958.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040485, intron 3 of 3)	intron (NR_040485, intron 3 of 3)	62494.0	NR_040485	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-163100192-2	chr2	163100092	163100292	+	662.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10591.0	NM_026630	68236.0	Mm.33648	NM_026630	ENSMUSG00000070708	Gtsf1l	2410116G06Rik	gametocyte specific factor 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-136761767-4	chr3	136761632	136761832	+	750.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008913, intron 1 of 13)	intron (NM_008913, intron 1 of 13)	91666.0	NM_001293622	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-33798578-2	chr17	33798484	33798684	+	849.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11939.0	NM_001357162	80880.0	Mm.196330	NM_030697	ENSMUSG00000042099	Kank3	0610013D04Rik|Ankrd47|D17Ertd288e|NG28	KN motif and ankyrin repeat domains 3	protein-coding	1.06559766317601	0.354638409850926	1.21242225736886	0.337079758511391	0.326039289072817	0.356841089061955	1.22751952922311	0.338431782296912	-0.786613665446958	0.684401578052466	1
Merged-chr5-90414784-4	chr5	90414671	90414871	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46099.0	NM_009654	11657.0	Mm.16773	NM_009654	ENSMUSG00000029368	Alb	Alb-1|Alb1|BCL002	albumin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-58747163-2	chr15	58747063	58747263	+	646.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	76264.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141514465-4	chr4	141514358	141514558	+	952.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347235, intron 3 of 14)	intron (NM_001347235, intron 3 of 14)	24139.0	NM_001347235	56381.0	Mm.299906	NM_019763	ENSMUSG00000040761	Spen	Mint|mKIAA0929	spen family transcription repressor	protein-coding	3.89692400162545	3.68731705586462	3.83431657806174	3.94867208348749	2.88535429724701	2.3159495918414	3.59293043085635	2.15097204645261	-1.53461645804947	0.0112267526281255	0.117980873917835
Merged-chr2-158046514-4	chr2	158046426	158046626	+	950.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027434, intron 3 of 6)	intron (NM_027434, intron 3 of 6)	18029.0	NM_001291135	70470.0	Mm.290810	NM_027434	ENSMUSG00000027651	Rprd1b	2610304G08Rik|2810446G03Rik|Crept	regulation of nuclear pre-mRNA domain containing 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-127609644-2	chr5	127609590	127609790	+	778.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133895, intron 1 of 7)	PB1D10|SINE|Alu	7702.0	NM_133895	100561.0	Mm.28506	NM_133895	ENSMUSG00000029416	Slc15a4	AA987064|AW742963|C130069N12Rik|PHT1|PTR4	solute carrier family 15, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-93951167-2	chr13	93951067	93951267	+	999.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-106629.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-74123185-4	chr17	74123098	74123298	+	925.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-75282.0	NM_053188	94224.0	Mm.38933	NM_053188	ENSMUSG00000038541	Srd5a2	5ART2|S5AR 2	steroid 5 alpha-reductase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-20568842-2	chr10	20568742	20568942	+	699.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013875, intron 2 of 12)	intron (NM_013875, intron 2 of 12)	-20514.0	NM_001347366	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4939566-3	chr16	4939459	4939659	+	911.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_037666)	promoter-TSS (NR_037666)	26.0	NR_037666	100503704.0	Mm.480572	NR_037666	ENSMUSG00000097397	Gm16861	-	predicted gene, 16861	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56788672-2	chr17	56788572	56788772	+	577.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009056, intron 5 of 16)	intron (NM_009056, intron 5 of 16)	18396.0	NM_001195673	100504446.0	Mm.46157	NM_001195673	ENSMUSG00000090273	Prr22	Gm546	proline rich 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-39418547-4	chr10	39418439	39418639	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122892, intron 2 of 12)	intron (NM_001122892, intron 2 of 12)	48740.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-159211521-2	chr1	159211421	159211621	+	651.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4b|LINE|L1	-20679.0	NM_001360878	26374.0	Mm.328135	NM_011931	ENSMUSG00000040782	Cop1	AI316802|C80879|Rfwd2	COP1, E3 ubiquitin ligase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-35579030-4	chr12	35578935	35579135	+	967.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44046.0	NM_001314027	11622.0	Mm.341377	NM_013464	ENSMUSG00000019256	Ahr	Ah|Ahh|Ahre|In|bHLHe76	aryl-hydrocarbon receptor	protein-coding	1.95020214207959	1.39934905060556	0.950328649040368	1.31689154711851	2.03798406327185	1.40953096687283	1.77682972812553	0.938813031033631	0.473845365952364	0.70766557761316	0.998431161219273
Merged-chr17-8807553-2	chr17	8807454	8807654	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011866, intron 1 of 21)	intron (NM_011866, intron 1 of 21)	5809.0	NM_011866	23984.0	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	-1.22315906685268	-1.19557143632602	-1.20673282037136	-0.55836125556573	-1.22265483704505	-1.19315271784257	-1.20420612767407	-1.21425999345206	-2.67891099987134	0.437057736398543	1
Merged-chr14-73390403-4	chr14	73390305	73390505	+	887.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	-5116.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122611537-4	chr8	122611425	122611625	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021502)	promoter-TSS (NM_021502)	-38.0	NM_016722	50917.0	Mm.1786	NM_016722	ENSMUSG00000015027	Galns	mFLJ00319	galactosamine (N-acetyl)-6-sulfate sulfatase	protein-coding	3.74996705177424	4.89763619281745	5.51996960841696	4.09797639066639	4.20273876549259	4.88521607532763	5.25541470197629	4.77131628889983	0.107339787578883	0.808637795777862	0.998431161219273
Merged-chr6-131247424-4	chr6	131247337	131247537	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001170851)	promoter-TSS (NM_001170851)	-75.0	NM_008462	16633.0	Mm.4783	NM_008462	ENSMUSG00000030187	Klra2	Klra30|Ly49b	killer cell lectin-like receptor, subfamily A, member 2	protein-coding	2.61459700107707	1.69895239070178	3.94069458321378	2.1715996751253	2.4420984965809	2.34575756591095	2.77360039340113	1.59644434342127	-1.04263477942099	0.235900887737981	0.732615750926739
Merged-chr7-45370689-4	chr7	45370574	45370774	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011698)	promoter-TSS (NM_011698)	-110.0	NM_011698	22342.0	Mm.20472	NM_011698	ENSMUSG00000003872	Lin7b	LIN-7B|MALS-2|Veli2	lin-7 homolog B (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-4917313-4	chr12	4917217	4917417	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001099628)	promoter-TSS (NM_001099628)	-36.0	NM_001099628	320817.0	Mm.210966	NM_001099628	ENSMUSG00000052812	Atad2b	1110014E10Rik|BC032887|C79189|D530031C13Rik	ATPase family, AAA domain containing 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-78868016-1	chr2	78867916	78868116	+	661.0	f0_balb.idr	Intergenic	Intergenic	-1031.0	NM_009454	22193.0	Mm.1485	NM_009454	ENSMUSG00000027011	Ube2e3	Ubce4|ubcM2	ubiquitin-conjugating enzyme E2E 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-27593227-2	chr7	27593127	27593327	+	554.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110208, intron 1 of 13)	intron (NM_001110208, intron 1 of 13)	1675.0	NM_001110208	11652.0	Mm.177194	NM_007434	ENSMUSG00000004056	Akt2	2410016A19Rik|AW554154|PKB|PKBbeta	thymoma viral proto-oncogene 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-8997740-3	chr19	8997632	8997832	+	906.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039959, intron 1 of 5)	intron (NM_001039959, intron 1 of 5)	8448.0	NM_001286518	66395.0	Mm.203866	NM_009643	ENSMUSG00000069833	Ahnak	DY6	AHNAK nucleoprotein (desmoyokin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132639004-4	chr4	132638921	132639121	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_211357)	promoter-TSS (NM_211357)	-25.0	NM_210071	14050.0	Mm.227733	NM_010166	ENSMUSG00000028886	Eya3	AI844637	EYA transcriptional coactivator and phosphatase 3	protein-coding	4.31098582186154	3.97905637981524	5.68513991131583	4.66666848326113	4.39122143809089	4.4553905940535	5.80443937944557	4.04786582133471	0.045204524688503	0.925679356277926	0.998431161219273
Merged-chr14-76913998-3	chr14	76913872	76914072	+	748.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	122645.0	NM_172488	210808.0	Mm.89278	NM_172488	ENSMUSG00000044350	Lacc1	9030625A04Rik	laccase domain containing 1	protein-coding	1.77092154193845	1.72420138097964	1.32432021632995	1.29520556386122	2.33233834865354	1.73685210157011	1.33250927284511	2.07886478311078	1.17243318287157	0.275359764425842	0.77982362793126
Merged-chr2-155541261-4	chr2	155541139	155541339	+	941.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019811, intron 2 of 17)	MIRc|SINE|MIR	15691.0	NR_040613	74945.0	Mm.401956	NR_040613	ENSMUSG00000086529	Acss2os	4930471I20Rik	acyl-CoA synthetase short-chain family member 2, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-81209209-3	chr7	81209151	81209351	+	810.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4553.0	NM_008803	18584.0	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-153386902-3	chr1	153386793	153386993	+	915.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27340.0	NR_033736	626058.0	Mm.31556	NM_001177359		E330020D12Rik	EG626058|F430003O07Rik|Gm6648	Riken cDNA E330020D12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-77918801-2	chr9	77918686	77918886	+	720.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_134255, intron 1 of 7)	intron (NM_134255, intron 1 of 7)	1421.0	NM_134255	68801.0	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	-0.538766317642433	-0.879717923221683	-0.577733013153503	-0.887998173127963	-0.75371755553133	-0.877173971446922	-0.885456949316953	-0.887653792028793	-1.87887286896867	0.515029832788769	1
Merged-chr17-29498782-2	chr17	29498682	29498882	+	808.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	7737.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-87260968-3	chr17	87260816	87261016	+	975.4166869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139295, intron 1 of 3)	ORR1A2-int|LTR|ERVL-MaLR	5031.0	NM_176808	193813.0	Mm.30251	NM_139295	ENSMUSG00000024150	Mcfd2	1810021C21Rik|F5f8d|Lman1ip|Sdnsf	multiple coagulation factor deficiency 2	protein-coding	4.013430885308	3.89160509090086	3.31425440169287	3.30616000782167	2.9854229334274	1.78038822072255	3.66160091209346	3.32333215461067	-0.878685194317671	0.170113798737652	0.637554776318518
Merged-chr4-126137978-3	chr4	126137893	126138093	+	915.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028800, intron 10 of 10)	intron (NM_028800, intron 10 of 10)	-10010.0	NM_172145	230752.0	Mm.41569	NM_172145	ENSMUSG00000050212	Eva1b	2610027C15Rik|Fam176b	eva-1 homolog B (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-73330302-2	chr4	73330202	73330402	+	835.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	74770.0	NM_001013393	433719.0	Mm.348294	NM_001013393	ENSMUSG00000066137	Gm11487	-	predicted gene 11487	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-104697965-3	chr4	104697875	104698075	+	858.2666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177259, intron 9 of 14)	intron (NM_177259, intron 9 of 14)	-68342.0	NM_133882	110382.0	Mm.87072	NM_133882	ENSMUSG00000029656	C8b	4930439B20Rik|AI595927	complement component 8, beta polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-30064171-4	chr16	30064052	30064252	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1205.0	NM_008235	15205.0	Mm.390859	NM_008235	ENSMUSG00000022528	Hes1	Hry|bHLHb39	hes family bHLH transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-8848748-1	chr10	8848648	8848848	+	600.0	f1_balb.idr	intron (NM_175155, intron 2 of 19)	intron (NM_175155, intron 2 of 19)	37322.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0.823961738134085	1.89829439182211	1.21089516177999	1.02897038186798	0.830006615089868	1.11339816016685	0.678858021079994	1.03481513096072	-1.66910941117319	0.225632203057648	0.717692251401288
Merged-chr19-34260155-2	chr19	34260062	34260262	+	698.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4789.0	NM_007392	11475.0	Mm.213025	NM_007392	ENSMUSG00000035783	Acta2	0610041G09Rik|Actvs|SMAalpha|SMalphaA|a-SMA|alphaSMA	actin, alpha 2, smooth muscle, aorta	protein-coding	1.2301968813767	1.09863497603278	2.54103006549186	1.05185581776145	2.03188077475743	2.19268370474069	2.21907942640539	1.65748408564418	0.937388499671723	0.418716129158364	0.898591877339902
Merged-chr2-44981821-4	chr2	44981715	44981915	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	AmnSINE1|SINE|Deu	41362.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-47621761-2	chr6	47621661	47621861	+	595.916626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26731.0	NM_007971	14056.0	Mm.246688	NM_007971	ENSMUSG00000029687	Ezh2	Enx-1|Enx1h|KMT6|mKIAA4065	enhancer of zeste 2 polycomb repressive complex 2 subunit	protein-coding	-1.05924887612571	-1.03858042765653	-1.05033395428885	-0.886399107518934	-1.05872377538034	-1.0360333894043	-0.460517020109407	-1.0553455049382	1.85106656526495	0.559987859580616	1
Merged-chr10-7837949-2	chr10	7837849	7838049	+	748.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_172785, intron 1 of 5)	intron (NM_172785, intron 1 of 5)	1568.0	NR_039563	100628581.0		NR_039563	ENSMUSG00000093060	Mir5104	mir-5104|mmu-mir-5104|mu-mir-5104	microRNA 5104	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-127272750-2	chr2	127272650	127272850	+	666.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_139308, intron 1 of 7)	BC1_Mm|scRNA|scRNA	2521.0	NM_139308	99138.0	Mm.41271	NM_139308	ENSMUSG00000027367	Stard7	AI852671|AL022671|AW544915	START domain containing 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-112244344-1	chr5	112244244	112244444	+	541.0	f1_balb.idr	Intergenic	B1F|SINE|Alu	8174.0	NM_001312884	12959.0	Mm.40324	NM_021351	ENSMUSG00000066975	Cryba4	-	crystallin, beta A4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-20717653-2	chr10	20717553	20717753	+	812.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_013875, intron 1 of 12)	intron (NM_013875, intron 1 of 12)	7425.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-88256063-2	chr1	88255963	88256163	+	894.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001281466, exon 35 of 42)	exon (NM_001281466, exon 35 of 42)	13345.0	NR_040291	78605.0	Mm.384762	NR_040291		6430706D22Rik	-	RIKEN cDNA 6430706D22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-120073099-4	chr1	120072986	120073186	+	925.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019432, intron 1 of 1)	intron (NM_019432, intron 1 of 1)	694.0	NM_019432	170706.0	Mm.24750	NM_019432	ENSMUSG00000050777	Tmem37	AI173373|AW540203|Pr|Pr1	transmembrane protein 37	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-54513686-3	chr9	54513562	54513762	+	736.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12036.0	NM_172771	235380.0	Mm.93636	NM_172771	ENSMUSG00000041268	Dmxl2	6330586A12|6430411K14Rik|E130119P06Rik|mKIAA0856	Dmx-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-31926035-4	chr9	31925946	31926146	+	981.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12761.0	NM_013800	12023.0	Mm.261044	NM_013800	ENSMUSG00000032033	Barx2	2310006E12Rik|Barx2b	BarH-like homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-77795613-7	chr18	77795497	77795697	+	933.945557	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152167, intron 1 of 2)	intron (NR_152167, intron 1 of 2)	793.0	NR_152167	619308.0	Mm.490456	NM_001033812		F830208F22Rik	-	RIKEN cDNA F830208F22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-101716825-4	chr4	101716727	101716927	+	844.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001122899)	promoter-TSS (NM_001122899)	-580.0	NM_001122899	16847.0	Mm.259282	NM_010704	ENSMUSG00000057722	Lepr	LEPROT|Leprb|Modb1|OB-RGRP|Obr|db|diabetes|obese-like|obl	leptin receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-22851535-1	chr11	22851435	22851635	+	661.0	f0_balb.idr	intron (NM_001169114, intron 1 of 1)	intron (NM_001169114, intron 1 of 1)	8200.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-15063000-2	chr18	15062900	15063100	+	683.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001142731, exon 1 of 5)	exon (NM_001142731, exon 1 of 5)	582.0	NM_001142731	106931.0	Mm.329299	NM_134112	ENSMUSG00000036225	Kctd1	4933402K10Rik|AI661543|AW553000	potassium channel tetramerisation domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-176074791-3	chr1	176074665	176074865	+	907.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357846, intron 2 of 8)	intron (NM_001357846, intron 2 of 8)	139177.0	NM_001357845	319455.0	Mm.338001	NM_176916	ENSMUSG00000055214	Pld5	B230365F16Rik	phospholipase D family, member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-96075612-4	chr10	96075516	96075716	+	997.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	134953.0	NM_001001932	216238.0	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-66452446-2	chr18	66452346	66452546	+	551.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6158.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-10856067-4	chr17	10855972	10856172	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001317726, intron 1 of 6)	intron (NM_001317726, intron 1 of 6)	15713.0	NM_016694	50873.0	Mm.311110	NM_016694	ENSMUSG00000023826	Park2	PRKN	Parkinson disease (autosomal recessive, juvenile) 2, parkin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10188803-4	chr19	10188701	10188901	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146094, intron 5 of 11)	intron (NM_146094, intron 5 of 11)	-2574.0	NR_105959	102465600.0		NR_105959	ENSMUSG00000098363	Mir6993	Gm27642|mmu-mir-6993	microRNA 6993	ncRNA	3.35448322881173	2.31707499016077	2.88637584741137	3.72033432190168	3.50863253013864	2.8747048303714	3.6566158861882	3.95236288042878	0.590524786246945	0.339353847416407	0.840191386979375
Merged-chr6-82044665-3	chr6	82044556	82044756	+	997.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145570, intron 1 of 2)	intron (NM_145570, intron 1 of 2)	3028.0	NM_145570	232146.0	Mm.489683	NM_145570	ENSMUSG00000035104	Eva1a	BC014699|Fam176a|Tmem166	eva-1 homolog A (C. elegans)	protein-coding	1.51737860357423	1.42508004675777	1.66748977441792	2.36483662895465	3.20987272090487	3.3132248384371	3.54009899231771	3.43276157826143	3.20947158353539	8.94828130938955e-05	0.00286551990614028
Merged-chr8-70375376-4	chr8	70375276	70375476	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016685, intron 4 of 18)	CpG-14087	1828.0	NM_016685	12845.0	Mm.45071	NM_016685	ENSMUSG00000031849	Comp	TSP5	cartilage oligomeric matrix protein	protein-coding	4.07613026534104	4.2441428005333	1.98726640468826	3.43214411914528	2.23173750558762	3.50473135029245	3.71556927105875	4.07252965782026	-0.208971920127456	0.759668883641868	0.998431161219273
Merged-chr11-121759034-2	chr11	121758934	121759134	+	645.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56607.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-73071266-2	chr17	73071166	73071366	+	644.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36719.0	NM_001177968	225010.0	Mm.329194	NM_001081071	ENSMUSG00000054469	Lclat1	AI181996|Agpat8|Alcat1|Gm91|Lycat	lysocardiolipin acyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-35862440-2	chr1	35862340	35862540	+	796.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-205960.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-90210247-2	chr7	90210147	90210347	+	928.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_146194)	TTS (NM_146194)	55185.0	NM_029256	75338.0	Mm.487222	NM_029256	ENSMUSG00000030617	Ccdc83	4930549K11Rik|4930554C01Rik|4932423M01Rik	coiled-coil domain containing 83	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-39232894-3	chr15	39232795	39232995	+	867.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001256383, intron 1 of 25)	MERV1_I-int|LTR|ERV1	34609.0	NM_053271	116838.0	Mm.309296	NM_053271	ENSMUSG00000037386	Rims2	2810036I15Rik|AW048769|RIM2|Rab3ip2|Rim2(+40A)|Rim2(+44A)|Rim2(+4A)|Serg2|Syt3-rs|mKIAA0751	regulating synaptic membrane exocytosis 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-79528173-4	chr11	79528075	79528275	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001033711, exon 2 of 2)	5' UTR (NM_001033711, exon 2 of 2)	2434.0	NM_146023	101488212.0	Mm.439665	NM_146023	ENSMUSG00000070354	Evi2	Evi2a-evi2b|Gm21975	ecotropic viral integration site 2	protein-coding	3.83058626734378	2.8534344310699	4.67972377776821	3.559012731672	3.9151625640116	3.31168043662593	4.11026581036898	4.30037816961887	0.0863391475951135	0.87314115678596	0.998431161219273
Merged-chr1-131481623-4	chr1	131481537	131481737	+	828.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081011, intron 2 of 22)	intron (NM_001081011, intron 2 of 22)	45724.0	NM_001081011	14270.0	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-18070868-1	chr10	18070768	18070968	+	563.0	f0_balb.idr	intron (NM_009048, intron 1 of 19)	intron (NM_009048, intron 1 of 19)	14928.0	NM_001111065	19707.0	Mm.4479	NM_009048	ENSMUSG00000019854	Reps1	BB161292	RalBP1 associated Eps domain containing protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116643440-4	chr11	116643326	116643526	+	956.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10887.0	NM_030206	114886.0	Mm.34598	NM_030206	ENSMUSG00000020810	Cygb	3110001K20Rik|HGb|Staap	cytoglobin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-13009261-4	chr7	13009145	13009345	+	903.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024699, intron 1 of 2)	intron (NM_001024699, intron 1 of 2)	607.0	NM_001024699	232879.0	Mm.279272	NM_001024699	ENSMUSG00000049600	Zbtb45	BB161562|Gm157|Zfp499	zinc finger and BTB domain containing 45	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-106581662-4	chr8	106581562	106581762	+	916.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-5481.0	NR_045470	68692.0	Mm.416843	NR_045470	ENSMUSG00000099139	1110028F18Rik	-	RIKEN cDNA 1110028F18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-4973441-3	chr11	4973349	4973549	+	844.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001243043, intron 1 of 22)	intron (NM_001243043, intron 1 of 22)	-13375.0	NM_001355659	11764.0	Mm.274816	NM_007454	ENSMUSG00000009090	Ap1b1	Adtb1|b2b1660Clo	adaptor protein complex AP-1, beta 1 subunit	protein-coding	-1.3681463318974	-1.33624156493372	-1.34650167276047	-0.80669348975676	-1.36769697821496	-1.33401815676661	-1.34417900924365	-1.3534210303531	-2.3580830592467	0.49586638340111	1
Merged-chr2-119325642-2	chr2	119325542	119325742	+	617.375	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019454)	promoter-TSS (NM_019454)	-142.0	NM_019454	54485.0	Mm.143719	NM_019454	ENSMUSG00000027314	Dll4	Delta4	delta like canonical Notch ligand 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-89002485-6	chr11	89002436	89002636	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009546, intron 1 of 8)	intron (NM_009546, intron 1 of 8)	3133.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88529854-2	chr3	88529754	88529954	+	805.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2541.0	NM_001029890	72640.0	Mm.275154	NM_001029890	ENSMUSG00000074480	Mex3a	2700083E18Rik|Gm411|Rkhd4	mex3 RNA binding family member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-181930874-4	chr2	181930761	181930961	+	958.775024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR33|LTR|ERVK	-60365.0	NM_001205282	672125.0	Mm.489571	NM_001205282	ENSMUSG00000098505	Gm14496	-	predicted gene 14496	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-38885746-3	chr3	38885688	38885888	+	754.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1152.0	NM_183221	329628.0	Mm.316210	NM_183221	ENSMUSG00000046743	Fat4	6030410K14Rik|9430004M15	FAT atypical cadherin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-122939413-2	chr3	122939313	122939513	+	628.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133857, intron 14 of 15)	intron (NM_133857, intron 14 of 15)	15016.0	NM_024461	67704.0	Mm.24219	NM_024461	ENSMUSG00000054091	1810037I17Rik	5730414I01Rik|Aln	RIKEN cDNA 1810037I17 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-134229652-4	chr5	134229617	134229817	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286037)	promoter-TSS (NM_001286037)	-92.0	NR_104383	17969.0	Mm.425296	NM_010876	ENSMUSG00000015950	Ncf1	NCF-47K|NOXO2|Ncf-1|p47-phox|p47<phox>|p47phox	neutrophil cytosolic factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134830857-2	chr6	134830775	134830975	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177687, intron 1 of 4)	intron (NM_177687, intron 1 of 4)	676.0	NM_177687	232430.0	Mm.267010	NM_177687	ENSMUSG00000032652	Crebl2	AI046348|B230205M03	cAMP responsive element binding protein-like 2	protein-coding	1.1547759367711	2.18781146868905	1.4045378019784	1.04480783413274	1.41789381903904	1.30573262635682	1.07791629925937	1.04936149037537	-1.14330866443157	0.348410138689977	0.848378678037495
Merged-chr1-106163464-3	chr1	106163358	106163558	+	751.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040630, intron 2 of 2)	intron (NR_040630, intron 2 of 2)	8066.0	NR_040630	626049.0	Mm.247410	NR_040630	ENSMUSG00000101583	Gm20753	-	predicted gene, 20753	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-116054548-4	chr12	116054452	116054652	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019565, intron 1 of 2)	intron (NM_019565, intron 1 of 2)	6828.0	NM_019565	56220.0	Mm.254997	NM_019565	ENSMUSG00000042063	Zfp386	Kzf1|mKIAA4205	zinc finger protein 386 (Kruppel-like)	protein-coding	5.90220363864577	5.85506313687218	6.12906353022731	5.3890795230693	6.23944001799212	6.57461384876143	6.51465055990614	5.60316912506048	0.476889713235775	0.0728331014294671	0.407580014435983
Merged-chr7-4460710-1	chr7	4460610	4460810	+	557.0	f0_c57.idr	Intergenic	Intergenic	-4025.0	NM_026146	67425.0	Mm.360392	NM_026146	ENSMUSG00000006154	Eps8l1	2310051G19Rik|4632407K17Rik|AW060268|DRC3|EPS8R1	EPS8-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27721638-2	chr2	27721538	27721738	+	712.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290482, intron 1 of 9)	intron (NM_001290482, intron 1 of 9)	11055.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-9614314-2	chr3	9614214	9614414	+	688.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4229.0	NM_133218	170753.0	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53124215-2	chr4	53124115	53124315	+	992.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 5 of 49)	intron (NM_013454, intron 5 of 49)	35680.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28795128-2	chr7	28795028	28795228	+	682.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358916, intron 6 of 11)	MT2B|LTR|ERVL	6159.0	NM_177158	320435.0	Mm.74632	NM_177158	ENSMUSG00000051735	Rinl	5830482F20Rik|9930116N10Rik	Ras and Rab interactor-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91091586-4	chr2	91091444	91091644	+	801.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-5134.0	NM_011355	20375.0	Mm.1302	NM_011355	ENSMUSG00000002111	Spi1	Dis-1|Dis1|PU.1|Sfpi-1|Sfpi1|Spi-1|Tcfpu1|Tfpu.1	spleen focus forming virus (SFFV) proviral integration oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-148354658-4	chr6	148354574	148354774	+	917.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_003634)	promoter-TSS (NR_003634)	18.0	NR_003634	66184.0	Mm.391542	NM_025405	ENSMUSG00000063171	Rps4l	1110033J19Rik|AA407494|Rps4y2	ribosomal protein S4-like	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-21036371-4	chr11	21036288	21036488	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54936.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-10013308-2	chr3	10013208	10013408	+	603.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001272098, intron 1 of 2)	intron (NM_001272098, intron 1 of 2)	723.0	NM_001272098	16592.0	Mm.741	NM_010634	ENSMUSG00000027533	Fabp5	E-FABP|Fabpe|Klbp|PA-FABP|mal1	fatty acid binding protein 5, epidermal	protein-coding	-0.802593673557486	-0.793094718163527	-0.341243695287107	-0.798614554876962	-0.802002397560642	-0.791090896558683	-0.332078011335404	-0.79819523297655	0.040958530317021	0.989184000390448	1
Merged-chr19-41380789-5	chr19	41380641	41380841	+	672.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 1 of 16)	L1MC4|LINE|L1	4329.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	0.390656731922413	0.264781861073521	1.03224280956884	0.562989475590741	0.827566193590217	0.266317515555016	0.259464595521987	0.423889772652553	-0.782286293315666	0.668475769485035	1
Merged-chr1-56971117-3	chr1	56970969	56971169	+	773.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_024325)	promoter-TSS (NR_024325)	265.0	NM_139146	212712.0	Mm.145599	NM_139146	ENSMUSG00000038331	Satb2	mKIAA1034	special AT-rich sequence binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-24573356-2	chr16	24573256	24573456	+	949.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 4 of 12)	intron (NM_178665, intron 4 of 12)	44042.0	NR_038091	624582.0	Mm.439775	NR_038091		Morf4l1-ps1	A730098P11Rik	mortality factor 4 like 1, pseudogene 1	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102286372-1	chr12	102286272	102286472	+	547.0	f1_balb.idr	intron (NM_001161365, intron 1 of 9)	intron (NM_001161365, intron 1 of 9)	2731.0	NM_001161365	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-17222111-1	chr12	17222011	17222211	+	618.0	f1_balb.idr	Intergenic	Intergenic	-44484.0	NM_027959	71853.0	Mm.222825	NM_027959	ENSMUSG00000020571	Pdia6	1700015E05Rik|AL023058|C77895|CaBP5|P5|Txndc7	protein disulfide isomerase associated 6	protein-coding	1.57649682542069	0.779152455442126	1.5042740264062	0.745851586725759	1.77069752407948	0.783258178036185	2.19374812552837	0.748453853743365	1.02474450421324	0.490649343142302	0.934345795476137
Merged-chr1-92975850-2	chr1	92975750	92975950	+	651.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271766, intron 1 of 1)	intron (NM_001271766, intron 1 of 1)	503.0	NM_001271766	64095.0	Mm.152780	NM_022320	ENSMUSG00000026271	Gpr35	KPG_007	G protein-coupled receptor 35	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-55030013-1	chr1	55029913	55030113	+	673.0	f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-2535.0	NM_031179	81898.0	Mm.279736	NM_031179	ENSMUSG00000025982	Sf3b1	155kDa|2810001M05Rik|AA409119|Prp10|SAP155|SF3b155|TA-8|Targ4	splicing factor 3b, subunit 1	protein-coding	-0.802593673557486	-0.793094718163527	-0.341243695287107	-0.798614554876962	-0.802002397560642	-0.791090896558683	-0.332078011335404	-0.79819523297655	0.040958530317021	0.989184000390448	1
Merged-chr17-6601680-4	chr17	6601589	6601789	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166627)	promoter-TSS (NM_001166627)	18.0	NM_001166627	100040531.0	Mm.457987	NM_001166627	ENSMUSG00000095677	Dynlt1f	100040631|Dynlt1e	dynein light chain Tctex-type 1F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-101722358-2	chr4	101722258	101722458	+	776.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146146, intron 1 of 18)	URR1A|DNA|hAT-Charlie	4951.0	NM_010704	16847.0	Mm.259282	NM_010704	ENSMUSG00000057722	Lepr	LEPROT|Leprb|Modb1|OB-RGRP|Obr|db|diabetes|obese-like|obl	leptin receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-48331064-3	chr17	48330963	48331163	+	688.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14901.0	NM_177083	320148.0	Mm.123455	NM_177083	ENSMUSG00000043740	B430306N03Rik	Treml6	RIKEN cDNA B430306N03 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-14874617-4	chr3	14874618	14874818	+	826.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11180.0	NM_007606	12350.0	Mm.300	NM_007606	ENSMUSG00000027559	Car3	BB219044|Ca3|Car-3	carbonic anhydrase 3	protein-coding	2.15395000137618	2.62909959862883	2.22029604628232	2.15753290884443	2.1719233583606	2.74081640092614	1.32446853854284	1.73074003441109	-0.454992018897705	0.628450267776246	0.981044028886007
Merged-chr11-72302186-2	chr11	72302086	72302286	+	685.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291153, intron 1 of 3)	intron (NM_001291153, intron 1 of 3)	557.0	NM_001037713	327959.0	Mm.291131	NM_001037713	ENSMUSG00000040483	Xaf1	Fbox39	XIAP associated factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-105704675-4	chr3	105704626	105704826	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163356)	promoter-TSS (NM_001163356)	127.0	NM_175398	109050.0	Mm.212591	NM_175398	ENSMUSG00000048458	Fam212b	6530418L21Rik|inka2	family with sequence similarity 212, member B	protein-coding	3.37751060528778	4.32883209087463	4.08190282328119	3.91358249714772	2.93300867797874	4.35805772498838	3.9210871114405	3.73444512079458	-0.199079233431827	0.698909580052827	0.998284579433352
Merged-chr3-144605973-4	chr3	144605860	144606060	+	824.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	35533.0	NM_053102	93684.0	Mm.29812	NM_053102	ENSMUSG00000037072	Selenof	9430015P09Rik|Sep15	selenoprotein F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-100798655-4	chr5	100798537	100798737	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081107)	promoter-TSS (NM_001081107)	-37.0	NM_001081107	191578.0	Mm.21469	NM_180984	ENSMUSG00000035266	Helq	AU021725|D430018E21Rik|Hel308	helicase, POLQ-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70514025-2	chr8	70513925	70514125	+	609.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_029366, exon 5 of 5)	exon (NM_029366, exon 5 of 5)	3539.0	NR_151735	78183.0	Mm.297372	NR_151735		4930522P08Rik	-	RIKEN cDNA 4930522P08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-48267765-4	chr17	48267662	48267862	+	766.604187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033922, intron 2 of 5)	intron (NM_001033922, intron 2 of 5)	3467.0	NM_001163796	224840.0	Mm.131234	NM_172623	ENSMUSG00000051682	Treml4	5031403H21Rik|BB137214|IDCP1|TLT-4|TLT4|Treml3	triggering receptor expressed on myeloid cells-like 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-39416597-3	chr18	39416489	39416689	+	978.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008173, intron 6 of 7)	intron (NM_008173, intron 6 of 7)	70656.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0.457724565539385	0.108080609433971	0.102531565404596	0.619242734430283	0.0922128785611014	0.109332190854207	0.280129064297058	0.721514274020285	-0.0734524279403788	0.971506599208956	1
Merged-chr5-146706189-3	chr5	146706107	146706307	+	809.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	88749.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	2.56624606274291	2.76619400534931	2.45103572118598	2.25693276560951	2.28681280082818	2.55079136169098	2.88512164877402	2.61677205748406	0.169716963165722	0.820081143433562	0.998431161219273
Merged-chr10-99261119-4	chr10	99261042	99261242	+	888.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2089.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-50920107-4	chr15	50920020	50920220	+	872.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	-30079.0	NM_032000	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-94648125-4	chr16	94648023	94648223	+	981.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113389, intron 2 of 11)	intron (NM_001113389, intron 2 of 11)	36704.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-90902180-1	chr5	90902080	90902280	+	591.0	f1_balb.idr	Intergenic	PB1D9|SINE|Alu	-1719.0	NM_009140	20310.0	Mm.4979	NM_009140	ENSMUSG00000058427	Cxcl2	CINC-2a|GROb|Gro2|MIP-2|MIP-2a|Mgsa-b|Mip2|Scyb|Scyb2	chemokine (C-X-C motif) ligand 2	protein-coding	0.159355726684323	0.188679266994842	0.394218196818948	0.171846346232795	0.494260898520457	1.42695730918952	0.181333446891161	0.68904421685806	3.68933119758202	0.0510586177188849	1
Merged-chr9-5573512-2	chr9	5573412	5573612	+	605.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3_Mus|LINE|L1	228036.0	NM_009808	12364.0	Mm.42163	NM_009808	ENSMUSG00000025887	Casp12	-	caspase 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-21068659-3	chr1	21068566	21068766	+	672.599976	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177409, intron 1 of 10)	intron (NM_177409, intron 1 of 10)	10559.0	NM_177409	170829.0	Mm.185680	NM_177409	ENSMUSG00000041779	Tram2	C330003D03Rik	translocating chain-associating membrane protein 2	protein-coding	2.52764228292473	3.50674428872177	2.47190285623992	2.05430027418764	3.16225178343169	3.29000731578546	3.26678515283712	3.08605227928216	0.787272126304366	0.251420898515401	0.749639150195771
Merged-chr9-116217303-3	chr9	116217175	116217375	+	711.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28095.0	NR_152204	100043817.0	Mm.404276	NR_152204		Gm4668	-	predicted gene 4668	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-116895337-2	chr2	116895237	116895437	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4815.0	NR_040336	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-44523954-4	chr11	44523864	44524064	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166553, intron 1 of 5)	intron (NM_001166553, intron 1 of 5)	4587.0	NM_001166553	74315.0	Mm.156771	NM_028862	ENSMUSG00000019189	Rnf145	3732413I11Rik|TMRF1	ring finger protein 145	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46758717-1	chr19	46758617	46758817	+	554.0	f1_balb.idr	Intergenic	Intergenic	-2892.0	NM_033569	94219.0	Mm.306903	NM_033569	ENSMUSG00000064105	Cnnm2	AU015877|AW048635|Acdp2|Clp2	cyclin M2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-82354368-7	chr10	82354299	82354499	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-113124.0	NM_001105557	237411.0		NM_172789	ENSMUSG00000062931	Zfp938	B230315N10Rik	zinc finger protein 938	protein-coding	3.22210247130324	3.16209710541327	2.96669678471533	1.47966643899124	3.35675805855036	2.76341575019157	2.22777505319509	2.45877130709168	-0.161013638681332	0.842410056134516	0.998431161219273
Merged-chr15-96599080-3	chr15	96598979	96599179	+	874.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166456, intron 4 of 15)	intron (NM_001166456, intron 4 of 15)	42883.0	NM_134086	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-148896989-3	chr6	148896889	148897089	+	719.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001301351)	promoter-TSS (NM_001301351)	-752.0	NM_181541	232560.0	Mm.150568	NM_181541	ENSMUSG00000030309	Caprin2	C1qdc1|Eeg1|rng140	caprin family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-154911393-4	chr4	154911307	154911507	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12364.0	NM_025582	66469.0	Mm.41868	NM_025582	ENSMUSG00000029059	Fam213b	2810405K02Rik|AI836168|PM/PGFS	family with sequence similarity 213, member B	protein-coding	5.2285353490005	5.34519269045187	5.67516756380878	5.21021705525493	3.66824603125059	3.56394122767144	3.43034234943175	3.78899223418191	-2.1945971851742	4.39523326163404e-09	5.85933429700947e-07
Merged-chr4-63765243-4	chr4	63765124	63765324	+	965.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20111.0	NM_177371	326623.0	Mm.208152	NM_177371	ENSMUSG00000050395	Tnfsf15	Tl1|Tl1a|Tnlg1b|Vegi	tumor necrosis factor (ligand) superfamily, member 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-89129516-4	chr4	89129414	89129614	+	959.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1288.0	NR_151607	102637941.0	Mm.366358	NR_151607		Gm12602	-	predicted gene 12602	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-120063141-1	chr1	120063041	120063241	+	562.0	f1_c57bl6.idr	exon (NM_001311077, exon 13 of 13)	exon (NM_001311077, exon 13 of 13)	10639.0	NM_019432	170706.0	Mm.24750	NM_019432	ENSMUSG00000050777	Tmem37	AI173373|AW540203|Pr|Pr1	transmembrane protein 37	protein-coding	-1.84436392554074	-1.52091821270385	-1.82290882857571	-1.83054882630441	-1.84220491470818	-1.81159244170985	-1.82080331928423	-1.82918127036376	-1.56828060379516	0.655578384384393	1
Merged-chr4-135316298-2	chr4	135316198	135316398	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	36916.0	NM_016799	51796.0	Mm.1963	NM_016799	ENSMUSG00000028809	Srrm1	AA407769|POP101|Srm160	serine/arginine repetitive matrix 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107684557-2	chr9	107684404	107684604	+	609.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_011349, intron 14 of 17)	intron (NM_011349, intron 14 of 17)	-4912.0	NM_008140	14685.0	Mm.284853	NM_008140	ENSMUSG00000034837	Gnat1	Gnat-1|Ird1|Ird2|Tralpha|irdc|irdr|transducin	guanine nucleotide binding protein, alpha transducing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-11598457-4	chr2	11598344	11598544	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152824, intron 2 of 11)	ID_B1|SINE|B4	4755.0	NM_152824	76938.0	Mm.182769	NM_152824	ENSMUSG00000037197	Rbm17	2700027J02Rik	RNA binding motif protein 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-53342975-2	chr15	53342875	53343075	+	749.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	3208.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126584003-2	chr7	126583903	126584103	+	953.400024	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001329789)	promoter-TSS (NM_001329789)	-767.0	NM_009907	12752.0	Mm.268930	NM_009907	ENSMUSG00000030720	Cln3	AI323623	ceroid lipofuscinosis, neuronal 3, juvenile (Batten, Spielmeyer-Vogt disease)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-32541417-4	chr9	32541344	32541544	+	986.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008026)	promoter-TSS (NM_008026)	8.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115281763-2	chr11	115281663	115281863	+	568.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4794.0	NM_007997	14149.0	Mm.4719	NM_007997	ENSMUSG00000018861	Fdxr	AR	ferredoxin reductase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-32782199-3	chr19	32782101	32782301	+	802.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008960, intron 2 of 8)	ID_B1|SINE|B4	24624.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-88500988-1	chr6	88500888	88501088	+	557.5	f0_balb.idr	Intergenic	Intergenic	17812.0	NM_016906	53421.0	Mm.28375	NM_016906	ENSMUSG00000030082	Sec61a1	AA408394|AA410007|Sec61a	Sec61 alpha 1 subunit (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124760228-2	chr6	124760128	124760328	+	596.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001302642, exon 10 of 10)	3' UTR (NM_001302642, exon 10 of 10)	-3741.0	NM_007881	13498.0	Mm.333380	NM_007881	ENSMUSG00000004263	Atn1	Atr1|Drpla|atrophin-1	atrophin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-14047102-2	chr10	14047008	14047208	+	732.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358783, intron 2 of 12)	B3A|SINE|B2	80729.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	1.93133712489812	1.12938704570341	1.34830228818943	1.93186003480301	2.04394161372365	2.58388317432469	1.10981386090418	2.15513114252479	1.18274080159503	0.294190891215035	0.798191705447
Merged-chr2-91498430-4	chr2	91498351	91498551	+	939.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172668, intron 31 of 37)	intron (NM_172668, intron 31 of 37)	-28311.0	NM_001165989	75786.0	Mm.168478	NM_029437	ENSMUSG00000040549	Ckap5	3110043H24Rik|4930432B04Rik|D730027C18Rik|T25636|mKIAA0097	cytoskeleton associated protein 5	protein-coding	0.597819894762982	0.449742377567715	1.36483347723497	0.427210870190211	0.412872967033184	1.06647972108888	1.65070218829046	0.428957365628094	0.912049045026026	0.597637725993124	0.971981563164
Merged-chr4-3679021-4	chr4	3678919	3679119	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 1 of 12)	intron (NM_001111096, intron 1 of 12)	898.0	NM_010747	17096.0	Mm.317331	NM_010747	ENSMUSG00000042228	Lyn	AA407514|Hck-2|p53Lyn|p56Lyn	LYN proto-oncogene, Src family tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-46458412-4	chr18	46458315	46458515	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7401.0	NR_045438	72076.0	Mm.82766	NM_028086		Mospd4	2010013H21Rik	motile sperm domain containing 4	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-60726869-3	chr11	60726766	60726966	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022009, intron 1 of 29)	CpG	397.0	NM_022009	14248.0	Mm.339755	NM_022009	ENSMUSG00000002812	Flii	3632430F08Rik|Fliih	flightless I actin binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-57530727-4	chr16	57530628	57530828	+	975.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 4 of 4)	intron (NM_001040397, intron 4 of 4)	-18514.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-34187921-4	chr5	34187826	34188026	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010753)	promoter-TSS (NM_010753)	-216.0	NM_010753	17122.0	Mm.259260	NM_010753	ENSMUSG00000037235	Mxd4	2810410A03Rik|Mad4|bHLHc12	Max dimerization protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-7844023-2	chr6	7843923	7844123	+	915.6666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1201.0	NM_052993	94192.0	Mm.102752	NM_052993	ENSMUSG00000042460	C1galt1	2210410E06Rik|AV284120|T-synthase	core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-21778334-4	chr19	21778249	21778449	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031997)	promoter-TSS (NM_031997)	9.0	NM_031997	83921.0	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-9643720-4	chr4	9643616	9643816	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177852)	promoter-TSS (NM_001177852)	1.0	NM_001177853	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-94122662-2	chr16	94122562	94122762	+	587.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_011377, exon 9 of 11)	exon (NM_011377, exon 9 of 11)	37402.0	NM_011377	20465.0	Mm.4775	NM_011377	ENSMUSG00000062713	Sim2	bHLHe15	single-minded family bHLH transcription factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-94859148-2	chr17	94859048	94859248	+	563.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5770.0	NM_001024731	100044193.0		NM_001024731	ENSMUSG00000095193	Gm20939	-	predicted gene, 20939	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124059835-4	chr5	124059728	124059928	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27568.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100397895-4	chr11	100397807	100398007	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_132425)	promoter-TSS (NR_132425)	-117.0	NM_010593	16480.0	Mm.299774	NM_010593	ENSMUSG00000001552	Jup	Ctnng|D930025P04Rik|PG	junction plakoglobin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-5487852-1	chr11	5487752	5487952	+	736.0	f1_balb.idr	Intergenic	B4|SINE|B4	-32789.0	NM_013842	22433.0	Mm.469937	NM_013842	ENSMUSG00000020484	Xbp1	D11Ertd39e|TREB-5|TREB5|XBP-1	X-box binding protein 1	protein-coding	-0.14960631434526	0.384438859244791	-0.138088733184819	0.691785799935924	-0.148532981224715	0.0767938035557825	-0.136856577860851	-0.141651898856431	-3.0557645869735	0.185448352004037	1
Merged-chr6-65587263-2	chr6	65587163	65587363	+	831.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CATATA)n|Simple_repeat|Simple_repeat	-3135.0	NM_001001495	414084.0	Mm.117558	NM_001001495	ENSMUSG00000044162	Tnip3	9030611K07Rik|ABIN-3|LIND	TNFAIP3 interacting protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-54591869-2	chr6	54591769	54591969	+	580.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153573, intron 1 of 3)	intron (NM_153573, intron 1 of 3)	1259.0	NM_153573	231997.0	Mm.274693	NM_153573	ENSMUSG00000038074	Fkbp14	BC029109|FKBP-14|FKBP22	FK506 binding protein 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3759049-4	chr4	3758935	3759135	+	933.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 10 of 12)	intron (NM_001111096, intron 10 of 12)	44071.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133707124-4	chr4	133707059	133707259	+	948.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080819, intron 4 of 19)	intron (NM_001080819, intron 4 of 19)	9949.0	NR_106086	102465707.0		NR_106086	ENSMUSG00000104566	Mir7227	mmu-mir-7227	microRNA 7227	ncRNA	1.28606554395569	1.92951318264249	0.851799674239422	1.35999306360107	1.85863501633494	0.871061416402709	0.855300011273033	1.61035245748208	-0.109132215625406	0.937258510870315	0.998431161219273
Merged-chr4-41503166-4	chr4	41503033	41503233	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001085515)	promoter-TSS (NM_001085515)	-58.0	NM_001085515	329828.0	Mm.27054	NM_001085515	ENSMUSG00000046312	AI464131	AA408153|AI604836|Gm762|Kiaa1161|Myorg|NET37	expressed sequence AI464131	protein-coding	5.37590234969002	5.83434938427365	5.78587176384004	5.42455308529618	4.38321648797223	4.67925560442829	3.38785280246959	4.64389563433358	-1.48897193980408	1.90669965723034e-05	0.000779883493890328
Merged-chr4-150138267-4	chr4	150138159	150138359	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019741, intron 7 of 13)	intron (NM_019741, intron 7 of 13)	-10713.0	NM_001085529	435818.0	Mm.359648	NM_001085529	ENSMUSG00000062064	Slc2a7	-	solute carrier family 2 (facilitated glucose transporter), member 7	protein-coding	-0.208283783115327	-0.190719793063729	-0.196438776803222	0.56960718211407	-0.207177803637276	-0.189435193761239	-0.195174548196752	0.578527616610749	0.0282038014051437	0.990994131209618	1
Merged-chr17-34235139-4	chr17	34235029	34235229	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3776.0	NM_010389	15002.0	Mm.327358	NM_010389	ENSMUSG00000041538	H2-Ob	A-beta-2|A-beta2|H-2Ab|H-2I|H-2Ob|H2-Ab|H2-Ab2|H2-IAb2|Ob	histocompatibility 2, O region beta locus	protein-coding	5.50776644022077	5.77374157125318	5.75127410079146	5.07157692405297	4.46565012858821	4.66909751430512	3.89939622641255	3.85310609636457	-1.53781261247119	1.06323660251144e-05	0.000488139518760165
Merged-chr10-118979957-2	chr10	118979803	118980003	+	626.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52760.0	NR_110482	216377.0	Mm.208936	NR_110482	ENSMUSG00000112854	Gm38403	C230029M16	predicted gene, 38403	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-157634584-3	chr3	157634478	157634678	+	889.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011196, intron 2 of 2)	intron (NM_011196, intron 2 of 2)	67686.0	NM_011196	19218.0	Mm.30424	NM_011196	ENSMUSG00000040016	Ptger3	EP3|Pgerep3|Ptgerep3	prostaglandin E receptor 3 (subtype EP3)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94464977-4	chr10	94464906	94465106	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 2 of 4)	ID_B1|SINE|B4	-49851.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-57361644-3	chr19	57361538	57361738	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040316)	promoter-TSS (NR_040316)	629.0	NM_145505	226252.0	Mm.358870	NM_145505	ENSMUSG00000033478	Fam160b1	AI450540|mKIAA1600	family with sequence similarity 160, member B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-142314249-3	chr3	142314148	142314348	+	890.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019809, intron 4 of 7)	intron (NM_019809, intron 4 of 7)	77602.0	NM_022554	56376.0	Mm.117709	NM_019808	ENSMUSG00000028273	Pdlim5	1110001A05Rik|AI987914|C87059|Enh|Enh1|Enh2|Enh3|LIM	PDZ and LIM domain 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-86436239-2	chr1	86436139	86436339	+	768.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1|SINE|Alu	9910.0	NM_027966	71863.0	Mm.179627	NM_027966	ENSMUSG00000036574	Tex44	1700019O17Rik	testis expressed 44	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-5401693-4	chr18	5401609	5401809	+	965.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66902.0	NM_001360447	240186.0	Mm.118257	NM_178722	ENSMUSG00000050945	Zfp438	9430031G09|9430091M14Rik|B830013J05Rik	zinc finger protein 438	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-88161816-3	chr11	88161697	88161897	+	858.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198013, intron 1 of 10)	intron (NM_198013, intron 1 of 10)	-7768.0	NM_001172099	103841.0	Mm.374846	NM_198013	ENSMUSG00000018378	Cuedc1	AI841487|C330016O16Rik	CUE domain containing 1	protein-coding	-0.00768089790295903	-0.139577048561842	-0.144820855200143	-0.148873730578913	-0.00341485270621861	0.709583607902871	0.0425951543036307	0.0237795177141927	3.07672229555209	0.137611519495388	1
Merged-chr8-117466021-2	chr8	117465921	117466121	+	783.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6756.0	NR_106046	102465653.0		NR_106046	ENSMUSG00000098483	Mir7078	Gm27386|mmu-mir-7078	microRNA 7078	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-20745711-5	chr18	20745592	20745792	+	897.1333619999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_019737, exon 1 of 9)	5' UTR (NM_019737, exon 1 of 9)	712.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-58189118-3	chr2	58189012	58189212	+	778.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC1|LINE|L1	25138.0	NR_045895	100042926.0	Mm.446515	NR_045895	ENSMUSG00000086862	Gm13546	-	predicted gene 13546	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-77962520-2	chr18	77962420	77962620	+	593.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001195633, exon 11 of 44)	exon (NM_001195633, exon 11 of 44)	24053.0	NM_001195633	100502841.0	Mm.297782	NM_001195633	ENSMUSG00000039840	Epg5	4732475F16|5430411K18Rik|AI661957|AW456499|mKIAA1632	ectopic P-granules autophagy protein 5 homolog (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-36892493-3	chr10	36892384	36892584	+	731.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	-82060.0	NM_008229	15182.0	Mm.19806	NM_008229	ENSMUSG00000019777	Hdac2	D10Wsu179e|YAF1|Yy1bp|mRPD3	histone deacetylase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-73620388-4	chr15	73620288	73620488	+	872.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033219, intron 1 of 7)	intron (NM_001033219, intron 1 of 7)	-3064.0	NM_001357747	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-120471314-2	chr6	120471214	120471414	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008359, intron 1 of 12)	B2_Mm2|SINE|B2	8117.0	NM_008359	16172.0	Mm.4481	NM_008359	ENSMUSG00000002897	Il17ra	AW538159|Cdw217|Il17r|VDw217	interleukin 17 receptor A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-69300701-4	chr18	69300616	69300816	+	745.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43776.0	NM_013685	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	0.0167665581206659	0.377873162250317	-0.352885188336603	-0.18985640871421	-0.360979784722367	-0.347557229123824	-0.351926253939453	-0.355653578575414	-3.63367918844103	0.132653878435895	1
Merged-chr6-31813977-1	chr6	31813877	31814077	+	687.0	f0_balb.idr	Intergenic	Intergenic	-147846.0	NR_152155	434003.0	Mm.332979	NR_152155	ENSMUSG00000084973	Gm13848	-	predicted gene 13848	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-60539516-2	chr11	60539416	60539616	+	900.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172943, intron 1 of 3)	intron (NM_172943, intron 1 of 3)	1833.0	NM_172943	268420.0	Mm.262056	NM_172943	ENSMUSG00000042650	Alkbh5	AW050020|AW215868|Abh5|E130207K11|Ofoxd	alkB homolog 5, RNA demethylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-100408465-4	chr13	100408366	100408566	+	990.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008670, exon 16 of 16)	3' UTR (NM_008670, exon 16 of 16)	44398.0	NM_008670	17940.0	Mm.6898	NM_008670	ENSMUSG00000021640	Naip1	AV364616|Birc1a|D13Lsd1|Naip|Naip-rs1	NLR family, apoptosis inhibitory protein 1	protein-coding	4.01936378345358	2.54131857630374	1.98886187250232	2.69150063343186	4.00635669246067	3.70695561381285	4.40635883173537	4.36582761105832	1.56755100798662	0.0116899455713318	0.121468793560772
Merged-chr14-8215371-4	chr14	8215284	8215484	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001305937)	promoter-TSS (NM_001305937)	-864.0	NM_001305937	71393.0	Mm.292712	NM_027782	ENSMUSG00000021752	Kctd6	5430433B02Rik|AU044285	potassium channel tetramerisation domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100315868-2	chr11	100315768	100315968	+	681.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4081.0	NM_011508	20918.0	Mm.13886	NM_011508	ENSMUSG00000035530	Eif1	Sui1-rs1	eukaryotic translation initiation factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167834368-2	chr2	167834268	167834468	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-97959.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-117879496-5	chr6	117879334	117879534	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	16553.0	NM_001001792	22685.0	Mm.249661	NM_008616	ENSMUSG00000042097	Zfp239	Mok-2|Mok2|Znf239	zinc finger protein 239	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-138619296-4	chr1	138619205	138619405	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021605, intron 1 of 9)	CpG	452.0	NM_021605	59125.0	Mm.143817	NM_021605	ENSMUSG00000026393	Nek7	2810460C19Rik|AU020186	NIMA (never in mitosis gene a)-related expressed kinase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-21640994-7	chr16	21640860	21641060	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081366, intron 46 of 46)	intron (NM_001081366, intron 46 of 46)	53705.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83419007-2	chr11	83418907	83419107	+	623.75	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001361566, exon 4 of 4)	3' UTR (NM_001361566, exon 4 of 4)	8935.0	NM_001013386	276952.0	Mm.66275	NM_001013386	ENSMUSG00000020684	Rasl10b	B230331P10Rik|Gm729|VTS58635	RAS-like, family 10, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88501017-2	chr3	88500917	88501117	+	592.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001002011, intron 1 of 11)	intron (NM_001002011, intron 1 of 11)	2335.0	NM_001111102	16905.0	Mm.243014	NM_019390	ENSMUSG00000028063	Lmna	Dhe	lamin A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-76283507-4	chr16	76283407	76283607	+	972.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	89542.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135307688-3	chr4	135307589	135307789	+	974.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34929.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-66299109-4	chr5	66299006	66299206	+	920.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001201413, exon 17 of 17)	3' UTR (NM_001201413, exon 17 of 17)	38265.0	NM_027602	70918.0	Mm.23166	NM_027602	ENSMUSG00000029206	Nsun7	4921525L17Rik	NOL1/NOP2/Sun domain family, member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-106351173-3	chr1	106351064	106351264	+	776.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133821, intron 10 of 16)	MTE2a|LTR|ERVL-MaLR	179295.0	NM_133821	98432.0	Mm.24115	NM_133821	ENSMUSG00000044340	Phlpp1	AI836256|Phlpp|Plekhe1|SCOP|mKIAA0606	PH domain and leucine rich repeat protein phosphatase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-62756965-4	chr11	62756859	62757059	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-27866.0	NM_133208	170740.0	Mm.339982	NM_133208	ENSMUSG00000005267	Zfp287	B230333C16Rik|SKAT-2|Skat2|Znf287|mszf16|mszf74	zinc finger protein 287	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-79294737-1	chr11	79294637	79294837	+	559.0	f1_balb.idr	Intergenic	B1_Mus2|SINE|Alu	-40042.0	NM_019653	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-54948356-1	chr6	54948256	54948456	+	570.0	f0_c57.idr	intron (NM_001171007, intron 2 of 11)	intron (NM_001171007, intron 2 of 11)	23305.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132078550-4	chr4	132078461	132078661	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3248.0	NM_001128607	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-83359057-3	chr10	83358944	83359144	+	745.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR49|LTR|ERVK	-1177.0	NM_026579	28109.0	Mm.196210	NM_026579	ENSMUSG00000020255	D10Wsu102e	AI747614|C430041I18Rik	DNA segment, Chr 10, Wayne State University 102, expressed	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30545258-4	chr2	30545157	30545357	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-49787.0	NM_030137	78617.0	Mm.40413	NM_030137	ENSMUSG00000047363	Cstad	9530039B02Rik	CSA-conditional, T cell activation-dependent protein	protein-coding	4.29694922444957	4.36897381306127	4.04781141721639	3.56162403405627	4.15321319895282	4.07106483326639	4.65347122115806	4.08127866704258	0.21234904041662	0.623663921140156	0.980259659844413
Merged-chr4-126305619-4	chr4	126305518	126305718	+	997.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199473, intron 2 of 3)	L1MB8|LINE|L1	16085.0	NM_133883	100206.0	Mm.11285	NM_133883	ENSMUSG00000042558	Adprhl2	AI836109|Arh3	ADP-ribosylhydrolase like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-75935816-4	chr10	75935732	75935932	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_175329, exon 2 of 5)	5' UTR (NM_175329, exon 2 of 5)	2702.0	NM_175329	103172.0	Mm.333849	NM_175329	ENSMUSG00000049422	Chchd10	1620401E04Rik|AI267078|Ndg2	coiled-coil-helix-coiled-coil-helix domain containing 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-26612691-4	chr14	26612577	26612777	+	995.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285467, intron 12 of 19)	intron (NM_001285467, intron 12 of 19)	-25457.0	NM_007479	11843.0	Mm.297768	NM_007479	ENSMUSG00000021877	Arf4	AA407803	ADP-ribosylation factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-60608675-3	chr13	60608597	60608797	+	753.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	ORR1E|LTR|ERVL-MaLR	6486.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-23015675-1	chr19	23015575	23015775	+	790.333313	f0_c57.idr	Intergenic	Intergenic	-125551.0	NM_010638	16601.0	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|Gm9971	Kruppel-like factor 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-35096260-4	chr4	35096182	35096382	+	913.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178061, intron 1 of 3)	intron (NM_178061, intron 1 of 3)	-55773.0	NM_199157	387510.0	Mm.386929	NM_199157	ENSMUSG00000042993	Ifnk	-	interferon kappa	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-32884664-3	chr19	32884559	32884759	+	987.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	127082.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115300339-4	chr5	115300302	115300502	+	985.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_131932)	promoter-TSS (NR_131932)	588.0	NM_019682	56455.0	Mm.256858	NM_019682	ENSMUSG00000009013	Dynll1	Dlc8|Dnclc1|Pin	dynein light chain LC8-type 1	protein-coding	1.90493519917387	1.0989840384755	1.87301956473519	1.70685455951623	1.92129512167837	1.10305291715292	1.77002282478736	1.71557759036557	-0.065982679756618	0.95475364691251	0.998431161219273
Merged-chr4-24537110-1	chr4	24537010	24537210	+	543.0	f1_c57bl6.idr	intron (NR_149739, intron 13 of 24)	Lx3A|LINE|L1	40659.0	NM_199467	212377.0	Mm.120919	NM_199467	ENSMUSG00000045751	Mms22l	F730047E07Rik|Gm134	MMS22-like, DNA repair protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-6986277-3	chr17	6986178	6986378	+	901.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026611, intron 4 of 8).2	intron (NM_026611, intron 4 of 8).2	7418.0	NM_026611	68195.0	Mm.181237	NM_026611	ENSMUSG00000094724	Rnaset2b	0610007O07Rik|4833423A10Rik|4930532K22Rik|C79750|RNASE6PL|Rnaset2	ribonuclease T2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-107869160-4	chr5	107869061	107869261	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007964, intron 1 of 17)	CpG	5946.0	NM_007964	14020.0	Mm.35796	NM_007964	ENSMUSG00000011831	Evi5	NB4S	ecotropic viral integration site 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-36551924-4	chr3	36551818	36552018	+	862.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019393)	promoter-TSS (NM_019393)	-688.0	NM_019393	50911.0	Mm.116711	NM_019393	ENSMUSG00000027714	Exosc9	PM/Scl-75|Pmscl1|RRP45|p5|p6	exosome component 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-35838137-2	chr16	35838037	35838237	+	642.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039530, intron 15 of 16)	intron (NM_001039530, intron 15 of 16)	33245.0	NM_001039530	547253.0	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81302446-2	chr10	81302346	81302546	+	652.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001293647, intron 1 of 17)	intron (NM_001293647, intron 1 of 17)	9483.0	NM_001146687	18717.0	Mm.24222	NM_008844	ENSMUSG00000034902	Pip5k1c	AI115456|AI835305|Pip5kIgamma	phosphatidylinositol-4-phosphate 5-kinase, type 1 gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-113613398-5	chr13	113613239	113613439	+	932.580017	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130796, intron 1 of 1)	intron (NM_130796, intron 1 of 1)	5225.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-129575552-2	chr6	129575452	129575652	+	587.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2734.0	NM_153590	243655.0	Mm.30968	NM_153590	ENSMUSG00000050241	Klre1	Klre-1|NKG2I	killer cell lectin-like receptor family E member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-30804772-2	chr6	30804672	30804872	+	906.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_149738, intron 21 of 24)	intron (NR_149738, intron 21 of 24)	63473.0	NR_029900	723930.0		NR_029900	ENSMUSG00000065501	Mir335	Mirn335|mir-335|mmu-mir-335	microRNA 335	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-129941807-4	chr5	129941645	129941845	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001001327)	promoter-TSS (NM_001001327)	-364.0	NM_001001327	69568.0	Mm.288718	NM_027121	ENSMUSG00000066735	Vkorc1l1	2310024K08Rik	vitamin K epoxide reductase complex, subunit 1-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19367518-2	chr7	19367418	19367618	+	684.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001010836, intron 1 of 12)	ID_B1|SINE|B4	6302.0	NM_001010836	333654.0	Mm.333640	NM_001010836	ENSMUSG00000040734	Ppp1r13l	AV260376|IASPP|Nkip1|wa3	protein phosphatase 1, regulatory (inhibitor) subunit 13 like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120109937-2	chr8	120109837	120110037	+	777.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4215.0	NM_001163762	234797.0	Mm.101958	NM_172286	ENSMUSG00000031824	6430548M08Rik	AW049007|Kiaa0513|mKIAA0513	RIKEN cDNA 6430548M08 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-84443474-4	chr14	84443392	84443592	+	997.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001013753)	promoter-TSS (NM_001013753)	-71.0	NM_001013753	219228.0	Mm.153643	NM_001013753	ENSMUSG00000035566	Pcdh17	C030033F14Rik|Gm78	protocadherin 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-139614683-4	chr4	139614566	139614766	+	991.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205173, intron 7 of 8)	intron (NM_001205173, intron 7 of 8)	-8228.0	NM_175438	212647.0	Mm.273571	NM_175438	ENSMUSG00000028737	Aldh4a1	A930035F14Rik|Ahd-1|Ahd1|Aldh4|Aldh5a1|E330022C09|P5cd|P5cdh|P5cdhl|P5cdhs|Ssdh1	aldehyde dehydrogenase 4 family, member A1	protein-coding	3.74440999108579	3.9036426621191	3.60801513789392	5.00188639349288	3.89102739888387	3.34205269106609	3.80287739732138	4.13437787003593	-0.510828251447066	0.316040466143841	0.818934371145261
Merged-chr10-50609687-3	chr10	50609590	50609790	+	728.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198007, intron 3 of 41)	intron (NM_198007, intron 3 of 41)	17021.0	NM_198007	77987.0	Mm.222497	NM_198007	ENSMUSG00000038774	Ascc3	ASC1p200|B630009I04Rik|BC023451|D430001L07Rik|D630041L21|Helic1|RNAH	activating signal cointegrator 1 complex subunit 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-8387249-6	chr10	8387255	8387455	+	807.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177387, intron 2 of 7)	intron (NM_177387, intron 2 of 7)	131470.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-56134326-2	chr13	56134226	56134426	+	950.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159513, intron 1 of 8)	intron (NM_001159513, intron 1 of 8)	1224.0	NM_012015	26914.0	Mm.283802	NM_012015	ENSMUSG00000015937	H2afy	H2AF12M|mH2a1|macroH2A1	H2A histone family, member Y	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-100089452-4	chr12	100089323	100089523	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22908.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-3743453-1	chr16	3743353	3743553	+	1000.0	f0_balb.idr	promoter-TSS (NM_148924)	promoter-TSS (NM_148924)	-646.0	NM_148924	74120.0	Mm.29081	NM_148924	ENSMUSG00000022529	Zfp263	1200014J04Rik|AI326880|AU020888|NT2|mFPM315	zinc finger protein 263	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-92375904-2	chr2	92375804	92376004	+	1000.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_028114, exon 2 of 11)	non-coding (NR_028114, exon 2 of 11)	665.0	NM_145122	18633.0	Mm.202782	NM_145122	ENSMUSG00000027222	Pex16	-	peroxisomal biogenesis factor 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-17063111-4	chr7	17062997	17063197	+	957.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162950)	promoter-TSS (NM_001162950)	-670.0	NM_001162950	53417.0	Mm.135110	NM_016868	ENSMUSG00000004328	Hif3a	Ipas|MOP7|NEPAS|bHLHe17	hypoxia inducible factor 3, alpha subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91723215-4	chr2	91723103	91723303	+	959.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6935.0	NM_172669	228361.0	Mm.436667	NM_172669	ENSMUSG00000040506	Ambra1	2310079H06Rik|A130023A14|AA474864|AV021921|D030051N19Rik|mKIAA1736	autophagy/beclin 1 regulator 1	protein-coding	2.60553286110615	1.68262084998714	2.65063344431143	1.79432530441827	2.95769762625846	1.4153819478546	2.67175391736229	2.67840498256499	0.60971621372561	0.507930192395606	0.943374049681311
Merged-chr7-19399977-2	chr7	19399877	19400077	+	701.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286038)	promoter-TSS (NM_001286038)	-56.0	NM_146182	232943.0	Mm.213403	NM_146182	ENSMUSG00000040714	Klc3	BC017147|Klct	kinesin light chain 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59412874-4	chr15	59412754	59412954	+	827.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164604, intron 2 of 4)	intron (NM_001164604, intron 2 of 4)	38656.0	NM_001164604	68501.0	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-3502330-2	chr8	3502230	3502430	+	848.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_053177, intron 1 of 13)	intron (NM_053177, intron 1 of 13)	1811.0	NM_053177	94178.0	Mm.8356	NM_053177	ENSMUSG00000004567	Mcoln1	2210015I05Rik|TRPML1|mucolipidin	mucolipin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-130784960-4	chr4	130784867	130785067	+	935.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7570.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-37847776-4	chr13	37847687	37847887	+	925.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039188, intron 1 of 9)	intron (NM_001039188, intron 1 of 9)	20394.0	NM_001039188	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-24191620-3	chr10	24191522	24191722	+	932.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31895.0	NM_021509	59012.0	Mm.285934	NM_021509	ENSMUSG00000020000	Moxd1	3230402N08Rik|MNCb-5203	monooxygenase, DBH-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5660298-1	chr19	5660198	5660398	+	579.0	f1_c57bl6.idr	intron (NM_001164481, intron 4 of 17)	intron (NM_001164481, intron 4 of 17)	3409.0	NM_001164482	20469.0	Mm.3072	NM_011379	ENSMUSG00000056917	Sipa1	Spa1	signal-induced proliferation associated gene 1	protein-coding	2.08096082733059	2.0416090194812	2.25421003314377	2.73964833190358	1.50967490607751	2.34953241744723	2.68141198298697	1.93195705213095	-0.277825433755593	0.757022725868101	0.998431161219273
Merged-chr5-90703063-3	chr5	90702961	90703161	+	741.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56237.0	NM_009141	20311.0	Mm.4660	NM_009141	ENSMUSG00000029371	Cxcl5	AMCF-II|Cxcl6|ENA-78|GCP-2|LIX|Scyb5|Scyb6	chemokine (C-X-C motif) ligand 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-63911065-4	chr7	63910968	63911168	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021366, intron 1 of 1)	intron (NM_021366, intron 1 of 1)	-5789.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	5.37629292082407	6.38024295294763	5.54685202740708	5.98496367114796	6.25911879770983	6.55102077374995	6.25085544645659	5.25359071642252	0.30931590356592	0.306196395381218	0.806865344318695
Merged-chr9-83599646-4	chr9	83599540	83599740	+	970.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172507, exon 4 of 4)	3' UTR (NM_172507, exon 4 of 4)	51302.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	4.38874345534532	3.28287442771977	4.18847350073625	3.70805930961658	4.19214562190854	4.17641245835015	2.59001605462257	3.92616892820452	-0.147463313839541	0.785154107766289	0.998431161219273
Merged-chr9-7833727-3	chr9	7833684	7833884	+	621.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001291503, exon 2 of 8)	exon (NM_001291503, exon 2 of 8)	3022.0	NM_001291503	11797.0	Mm.335659	NM_007465	ENSMUSG00000057367	Birc2	AW146227|Api1|Api2|Birc3|C-IAP1|C330006D17Rik|HIAP1|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF48|cIAP1|cIAP2|mcIAP1	baculoviral IAP repeat-containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117194645-4	chr11	117194589	117194789	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4972.0	NM_001113486	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-24631999-2	chr16	24631899	24632099	+	673.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 5 of 12)	intron (NM_178665, intron 5 of 12)	-89856.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-34994836-1	chr6	34994736	34994936	+	541.0	f0_balb.idr	Intergenic	Intergenic	-16837.0	NM_001025573	243753.0	Mm.440221	NM_001025573	ENSMUSG00000029847	Slc23a4	2010107G12Rik|Gm468	solute carrier family 23 member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-31826052-1	chr12	31825952	31826152	+	634.0	f0_balb.idr	intron (NM_001163126, intron 11 of 22)	intron (NM_001163126, intron 11 of 22)	-112126.0	NM_175191	73010.0	Mm.441517	NM_175191	ENSMUSG00000044067	Gpr22	2900068K05Rik|AW061316	G protein-coupled receptor 22	protein-coding	0.428751951862587	0.298044936444784	0.479596136629318	0.284310397884603	0.56802648614295	0.956864837966994	0.292021788746292	1.13603176324954	2.78694115206686	0.130091765449369	1
Merged-chr4-129495184-2	chr4	129495084	129495284	+	594.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3994.0	NM_001085491	68233.0	Mm.424983	NM_001085491	ENSMUSG00000078554	Fam229a	1700125D06Rik	family with sequence similarity 229, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-146777251-4	chr5	146777133	146777333	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011669, intron 1 of 8)	intron (NM_011669, intron 1 of 8)	17723.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-110816988-4	chr12	110816882	110817082	+	888.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011973, intron 4 of 11)	intron (NM_011973, intron 4 of 11)	23957.0	NM_011973	26448.0	Mm.140948	NM_011973	ENSMUSG00000056458	Mok	RAGE1|Rage|Stk30	MOK protein kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-47877595-4	chr6	47877524	47877724	+	978.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146175)	promoter-TSS (NM_146175)	69.0	NM_146175	101095.0	Mm.440186	NM_146175	ENSMUSG00000025821	Zfp282	AI449432|C81429|E430019K09Rik|HUB1	zinc finger protein 282	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-98628175-4	chr12	98628061	98628261	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289572)	promoter-TSS (NM_001289572)	19.0	NM_001289574	104871.0	Mm.210053	NM_178914	ENSMUSG00000021007	Spata7	AI661438|B230306G18Rik|HSD3	spermatogenesis associated 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-57281622-1	chr12	57281522	57281722	+	595.0	f0_balb.idr	intron (NM_001164370, intron 1 of 9)	intron (NM_001164370, intron 1 of 9)	51197.0	NM_001164370	73490.0	Mm.268180	NM_001164370	ENSMUSG00000047022	Mipol1	1700081O04Rik|6030439O22Rik|AU021838|AW536152|D12Ertd19e	mirror-image polydactyly 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-117848060-2	chr6	117847960	117848160	+	877.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6785.0	NM_001346652	232337.0	Mm.290847	NM_177684	ENSMUSG00000059689	Zfp637	AI646709|BC021601|Znf32	zinc finger protein 637	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-22117172-4	chr9	22117081	22117281	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357309)	promoter-TSS (NM_001357309)	14.0	NM_001357311	66126.0	Mm.29801	NM_170777	ENSMUSG00000013822	Elof1	1110011K10Rik	ELF1 homolog, elongation factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4636081-2	chr16	4635981	4636181	+	612.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030205, intron 9 of 27)	intron (NM_030205, intron 9 of 27)	-3864.0	NM_139307	246154.0	Mm.482140	NM_139307	ENSMUSG00000039646	Vasn	2610528G05Rik|Atia|Slitl2	vasorin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-28155019-2	chr15	28154919	28155119	+	721.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48747.0	NM_133365	110082.0	Mm.248464	NM_133365	ENSMUSG00000022262	Dnah5	AU022615|Dnahc5|Mdnah5|b2b1134Clo|b2b1154Clo|b2b1537Clo|b2b1565Clo|b2b3491Clo|b2b601Clo|mKIAA1603	dynein, axonemal, heavy chain 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-100703417-4	chr3	100703294	100703494	+	973.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17921.0	NM_010763	17156.0	Mm.271617	NM_010763	ENSMUSG00000008763	Man1a2	AI428775|AI528764|AI854422|Man1b|PCR2	mannosidase, alpha, class 1A, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-87696645-3	chr10	87696556	87696756	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-161609.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	2.11176187145822	3.25996581786206	2.63329054633953	2.72081393787401	1.07897594149438	1.20624903312376	2.33416266562945	1.13245305521064	-2.78822634916085	0.00827521890303075	0.0950392391042467
Merged-chr6-125446958-1	chr6	125446858	125447058	+	594.0	f1_balb.idr	Intergenic	Intergenic	47802.0	NM_007657	12527.0	Mm.210676	NM_007657	ENSMUSG00000030342	Cd9	Tspan29	CD9 antigen	protein-coding	2.21094720361829	1.4587251941505	2.53493026147333	2.67437178877079	1.77429385589565	2.76601302414892	3.442859928323	2.94987131598959	1.10911096793248	0.194476243569609	0.674631641388253
Merged-chr12-111700172-2	chr12	111700072	111700272	+	595.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12781.0	NM_001324481	70369.0	Mm.44239	NM_027404	ENSMUSG00000049792	Bag5	1600025G07Rik|4930405J06Rik|Bag-5	BCL2-associated athanogene 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-135386990-2	chr3	135386890	135387090	+	590.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028946, intron 8 of 12)	intron (NM_028946, intron 8 of 12)	36443.0	NM_025902	67006.0	Mm.269993	NM_025902	ENSMUSG00000028165	Cisd2	1500009M05Rik|1500026J14Rik|1500031D15Rik|AI848398|B630006A20Rik|Miner1|Naf-1|Noxp70|Zcd2	CDGSH iron sulfur domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-44075573-3	chr5	44075429	44075629	+	756.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163578, intron 1 of 22)	intron (NM_001163578, intron 1 of 22)	19239.0	NM_001163581	19126.0	Mm.6250	NM_008935	ENSMUSG00000029086	Prom1	4932416E19Rik|AC133|CD133|Prom|Prom-1|Proml1	prominin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10904989-3	chr19	10904885	10905085	+	824.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134129, intron 15 of 15)	intron (NM_134129, intron 15 of 15)	6340.0	NM_001253844	28000.0	Mm.491104	NM_134129	ENSMUSG00000024735	Prpf19	AA617263|AL024362|D19Wsu55e|NMP200|PSO4|Prp19|Snev	pre-mRNA processing factor 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-21411891-4	chr16	21411772	21411972	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11246.0	NM_001285893	209018.0	Mm.235683	NM_145948	ENSMUSG00000033653	Vps8	AI315068|AU040738|mKIAA0804	VPS8 CORVET complex subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-68175890-4	chr15	68175786	68175986	+	994.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152182, intron 6 of 13)	intron (NR_152182, intron 6 of 13)	82970.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-27213166-4	chr3	27213056	27213256	+	941.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 1 of 4)	intron (NM_178772, intron 1 of 4)	30152.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-80561317-4	chr15	80561212	80561412	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163189)	promoter-TSS (NM_001163189)	-842.0	NM_001163189	383075.0	Mm.297626	NM_001163189	ENSMUSG00000050439	Enthd1	Gm1242|Gm86	ENTH domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-67953197-4	chr7	67953090	67953290	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010513, intron 1 of 20)	CpG-13221	933.0	NM_010513	16001.0	Mm.275742	NM_010513	ENSMUSG00000005533	Igf1r	A330103N21Rik|CD221|D930020L01|IGF-1R|hyft	insulin-like growth factor I receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33261798-3	chr16	33261715	33261915	+	823.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080557, intron 1 of 13)	RMER4A|LTR|ERVK	10359.0	NM_080557	69150.0	Mm.28196	NM_080557	ENSMUSG00000022808	Snx4	1810036H14Rik|AI037066	sorting nexin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135856039-4	chr4	135855969	135856169	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010178)	promoter-TSS (NM_010178)	-2.0	NM_001284196	14105.0	Mm.10229	NM_010178	ENSMUSG00000028676	Srsf10	FUSIP2|Fusip1|NSSR1|NSSR2|Nssr|SRrp40|Sfrs13a|Srsf13a|TASR|TASR1|TASR2	serine/arginine-rich splicing factor 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166024338-2	chr2	166024238	166024438	+	639.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008679, intron 1 of 22)	B1F|SINE|Alu	31701.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-20671963-4	chr16	20671858	20672058	+	797.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001304432)	promoter-TSS (NM_001304432)	-769.0	NM_145941	208643.0	Mm.260256	NM_145941	ENSMUSG00000045983	Eif4g1	E030015G23Rik|eIF-4-gamma 1|eIF-4G 1|eIF-4G1|eIF4GI	eukaryotic translation initiation factor 4, gamma 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55802241-2	chr19	55802141	55802341	+	634.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001331146, intron 4 of 14)	intron (NM_001331146, intron 4 of 14)	60431.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-53340818-2	chr18	53340718	53340918	+	672.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029394, intron 3 of 6)	intron (NM_029394, intron 3 of 6)	77189.0	NM_008908	19038.0	Mm.4587	NM_008908	ENSMUSG00000024538	Ppic	CyP-20c	peptidylprolyl isomerase C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-105975824-3	chr5	105975701	105975901	+	784.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	99233.0	NM_018759	54367.0	Mm.248876	NM_018759	ENSMUSG00000029290	Zfp326	5730470H14Rik|ZAN75|Znf326	zinc finger protein 326	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-105649542-2	chr5	105649442	105649642	+	613.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50427.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-4149934-4	chr7	4149843	4150043	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175529)	promoter-TSS (NM_175529)	-71.0	NM_175529	243813.0	Mm.347643	NM_175529	ENSMUSG00000043432	Leng9	9530024C23Rik|F630035L11Rik	leukocyte receptor cluster (LRC) member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-142519356-2	chr6	142519256	142519456	+	984.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11399.0	NM_001316322	16832.0	Mm.9745	NM_008492	ENSMUSG00000030246	Ldhb	AI790582|H-Ldh|LDH-B|LDH-H|Ldh-2|Ldh2	lactate dehydrogenase B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-15853292-4	chr13	15853163	15853363	+	832.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155430, intron 3 of 3)	MLT1A1|LTR|ERVL-MaLR	46020.0	NR_046131	328190.0	Mm.446957	NR_046131	ENSMUSG00000113338	A530046M15Rik	A530046M15	RIKEN cDNA A530046M15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-11453180-2	chr4	11453080	11453280	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32778.0	NM_001081183	66185.0	Mm.331487	NM_001081183	ENSMUSG00000040720	Virma	1110037F02Rik|4930422M05Rik|Kiaa1429|mKIAA1429	vir like m6A methyltransferase associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-110018264-4	chr7	110018144	110018344	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001362172)	promoter-TSS (NM_001362172)	-7.0	NM_181517	233726.0	Mm.222328	NM_181517	ENSMUSG00000066232	Ipo7	A330055O14Rik|C330016G14|Imp7|Ranbp7	importin 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-172206345-2	chr1	172206255	172206455	+	883.0	f0_balb.idr|f0_c57.idr	intron (NM_001329871, intron 1 of 3)	intron (NM_001329871, intron 1 of 3)	449.0	NM_001329871	18611.0	Mm.544	NM_011063	ENSMUSG00000013698	Pea15a	Mat1|PEA-15|Pea15|Pkcs15	phosphoprotein enriched in astrocytes 15A	protein-coding	2.16985873236418	1.31372537441253	2.75467524546576	3.07532408587608	1.94706572642394	2.19573840232382	1.28585927957763	2.60475549255065	-0.856358744496991	0.391596012183503	0.880834074648981
Merged-chr5-53593667-2	chr5	53593567	53593767	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359152, intron 1 of 9)	intron (NM_001359152, intron 1 of 9)	3181.0	NM_001080927	19664.0	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24719214-2	chr17	24719114	24719314	+	744.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008503)	promoter-TSS (NM_008503)	618.0	NR_028515	100306952.0	Mm.484806	NR_028515	ENSMUSG00000089255	Snora78	ACA64	small nucleolar RNA, H/ACA box 7	snoRNA	1.87260786504734	1.1264212206218	1.09600394616072	2.20859146032499	1.76472161760038	2.14450682490325	3.03740497637303	1.53716793027731	1.43849899684125	0.189111717324994	0.667555616405381
Merged-chr8-124242382-4	chr8	124242255	124242455	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139272, intron 1 of 15)	MIR|SINE|MIR	10961.0	NM_139272	108148.0	Mm.33808	NM_139272	ENSMUSG00000089704	Galnt2	AI480629	polypeptide N-acetylgalactosaminyltransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-83922081-4	chr12	83922020	83922220	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_073563)	promoter-TSS (NR_073563)	-186.0	NR_073564	18222.0	Mm.4390	NM_010949	ENSMUSG00000021224	Numb	Nb	NUMB endocytic adaptor protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36447101-1	chr1	36447001	36447201	+	615.333313	f0_balb.idr	Intergenic	Intergenic	-1830.0	NM_001310517	214895.0	Mm.287854	NM_001013374	ENSMUSG00000001143	Lman2l	A630028F14Rik|VIP36-like|VIPL	lectin, mannose-binding 2-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-110537820-3	chr11	110537706	110537906	+	826.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58466.0	NM_001356346	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	2.92660571471912	3.60768373185854	3.07176733478506	3.08186357536242	3.25990137872098	3.19938754065743	2.98884435693939	3.09739426123825	-0.0895981642579792	0.880361687632802	0.998431161219273
Merged-chr18-24528423-2	chr18	24528323	24528523	+	989.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360807, intron 1 of 7)	(TTTTG)n|Simple_repeat|Simple_repeat	1781.0	NM_144861	225283.0	Mm.28427	NM_144861	ENSMUSG00000040446	Rprd1a	C77387|mKIAA4077	regulation of nuclear pre-mRNA domain containing 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126593367-4	chr8	126593266	126593466	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164598)	promoter-TSS (NM_001164598)	70.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-59892313-2	chr10	59892213	59892413	+	720.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019965, intron 3 of 8)	intron (NM_019965, intron 3 of 8)	12722.0	NM_019965	56709.0	Mm.103610	NM_019965	ENSMUSG00000020109	Dnajb12	Dj10|mDj10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-59096592-4	chr4	59096496	59096696	+	968.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61440.0	NM_025277	14700.0	Mm.41780	NM_025277	ENSMUSG00000038607	Gng10	AV006524	guanine nucleotide binding protein (G protein), gamma 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-42642620-4	chr7	42642544	42642744	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001242388)	promoter-TSS (NM_001242388)	-40.0	NM_001242388	208111.0	Mm.387841	NM_001034857	ENSMUSG00000074158	Zfp976	9830147E19Rik|C330019L16Rik	zinc finger protein 976	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91948255-1	chr2	91948155	91948355	+	1000.0	f0_c57.idr	intron (NM_001166597, intron 1 of 31)	intron (NM_001166597, intron 1 of 31)	2093.0	NM_001166597	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124737758-2	chr6	124737658	124737858	+	929.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077705, intron 1 of 15)	intron (NM_001077705, intron 1 of 15)	951.0	NM_001077705	15170.0	Mm.271799	NM_013545	ENSMUSG00000004266	Ptpn6	70Z-SHP|Hcph|PTPTY-42|Ptp1C|SH-PTP1|SHP-1|hcp|me	protein tyrosine phosphatase, non-receptor type 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-64445345-2	chr1	64445245	64445445	+	585.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-87459.0	NM_009952	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-3197794-8	chr11	3197694	3197894	+	988.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4331.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31167607-2	chr14	31167507	31167707	+	665.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_138672, intron 1 of 68)	intron (NM_138672, intron 1 of 68)	1034.0	NM_138672	192187.0	Mm.220821	NM_138672	ENSMUSG00000042286	Stab1	FEEL-1|FELE-1|MFEEL-1|MS-1|STAB-1|mKIAA0246	stabilin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-101650587-4	chr4	101650468	101650668	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175036, intron 1 of 3)	intron (NM_175036, intron 1 of 3)	2785.0	NM_175036	230514.0	Mm.4756	NM_175036	ENSMUSG00000035212	Leprot	LEPR|OB-RGRP|Obrgrp|VPS55	leptin receptor overlapping transcript	protein-coding	2.33903976938809	1.78224240857647	2.64806405493849	2.84552350622766	2.35857395643297	3.27728869296374	2.55727782179121	2.07265924617219	0.371361083384586	0.647944316822781	0.984971605872381
Merged-chr6-11371953-2	chr6	11371853	11372053	+	632.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	-397575.0	NR_033776	57866.0	Mm.4397	NR_033776		AA545190	-	EST AA545190	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55677701-4	chr14	55677585	55677785	+	983.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177992, intron 8 of 9)	intron (NM_177992, intron 8 of 9)	4132.0	NM_145705	28113.0	Mm.29346	NM_145705	ENSMUSG00000007589	Tinf2	AW552114|D14Wsu146e|Tin2	Terf1 (TRF1)-interacting nuclear factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-68787911-2	chr2	68787811	68788011	+	890.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-73530.0	NM_172856	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-120571502-4	chr9	120571384	120571584	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025974)	promoter-TSS (NM_025974)	-33.0	NM_025974	67115.0	Mm.289810	NM_025974	ENSMUSG00000025794	Rpl14	3100001N19Rik|AA407502|AL022816|CAG-ISL-7|CTG-B33|L14	ribosomal protein L14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69877501-2	chr11	69877401	69877601	+	829.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_153143)	TTS (NM_153143)	517.0	NM_001195710	100503361.0	Mm.340490	NM_001195710	ENSMUSG00000094845	Tmem95	432576	transmembrane protein 95	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167277886-2	chr2	167277786	167277986	+	628.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-37349.0	NM_008968	19223.0	Mm.2339	NM_008968	ENSMUSG00000017969	Ptgis	Cyp8|Cyp8a1|Pgis	prostaglandin I2 (prostacyclin) synthase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-111949074-2	chr13	111948974	111949174	+	598.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	81138.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-122853813-4	chr4	122853691	122853891	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008917, intron 6 of 8)	intron (NM_008917, intron 6 of 8)	17564.0	NM_008917	19063.0	Mm.277719	NM_008917	ENSMUSG00000028657	Ppt1	9530043G02Rik|AA960502|C77813|CLN1|D4Ertd184e|INCL|PPT	palmitoyl-protein thioesterase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-114604495-3	chr5	114604393	114604593	+	736.805542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004180, intron 2 of 2)	intron (NM_001004180, intron 2 of 2)	36242.0	NM_001004180	433940.0	Mm.194212	NM_001004180	ENSMUSG00000041930	Fam222a	-	family with sequence similarity 222, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-30922751-2	chr5	30922651	30922851	+	567.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310524, intron 1 of 8)	intron (NM_001310524, intron 1 of 8)	1192.0	NM_001310524	16548.0	Mm.22451	NM_008439	ENSMUSG00000029162	Khk	-	ketohexokinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-60894002-2	chr2	60893902	60894102	+	625.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	-12564.0	NM_001141931	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-8772757-2	chr12	8772657	8772857	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011519, intron 1 of 4)	CpG	1361.0	NM_011519	20969.0	Mm.2580	NM_011519	ENSMUSG00000020592	Sdc1	AA408134|AA409076|CD138|Sstn|Synd|Synd1|syn-1	syndecan 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-36304103-1	chr10	36304003	36304203	+	559.0	f1_balb.idr	Intergenic	Intergenic	-202704.0	NM_001253355	319415.0	Mm.332442	NM_001081208	ENSMUSG00000044499	Hs3st5	D930005L05Rik|Gm1151|Hs3ost5	heparan sulfate (glucosamine) 3-O-sulfotransferase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120485129-2	chr8	120485029	120485229	+	602.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3737.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-35712044-3	chr7	35711866	35712066	+	848.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_178704, exon 12 of 19)	exon (NM_178704, exon 12 of 19)	42488.0	NM_178704	233115.0	Mm.257808	NM_178704	ENSMUSG00000043671	Dpy19l3	6030410G08|9330164H19Rik	dpy-19-like 3 (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-36065148-2	chr3	36065048	36065248	+	611.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172678)	promoter-TSS (NM_172678)	-831.0	NM_172678	229211.0	Mm.260997	NM_172678	ENSMUSG00000027710	Acad9	2600017P15Rik|4732402K02|C630012L17Rik|NPD002	acyl-Coenzyme A dehydrogenase family, member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-27311690-2	chr3	27311590	27311790	+	753.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5387.0	NM_009425	22035.0	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-90323443-4	chr15	90323391	90323591	+	965.9833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-30219.0	NR_155426	102640415.0	Mm.394352	NR_155426	ENSMUSG00000116204	Gm36480	-	predicted gene, 36480	ncRNA	4.59144509504347	4.38094209268115	4.56086019396144	4.29411464133314	4.47719878389383	4.4713967434692	4.14497105755237	4.59795547015775	-0.0379958571020071	0.919421471040462	0.998431161219273
Merged-chr11-103032053-2	chr11	103031953	103032153	+	992.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008707, intron 1 of 11)	intron (NM_008707, intron 1 of 11)	3510.0	NM_008707	18107.0	Mm.10265	NM_008707	ENSMUSG00000020936	Nmt1	AW536594	N-myristoyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-146768956-4	chr5	146768858	146769058	+	643.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011669, exon 2 of 9)	exon (NM_011669, exon 2 of 9)	25998.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-22818601-4	chr11	22818480	22818680	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41155.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-123845328-2	chr9	123845228	123845428	+	605.849976	f1_balb.idr|f1_c57bl6.idr	intron (NM_148925, intron 1 of 18)	intron (NM_148925, intron 1 of 18)	6333.0	NM_148925	17281.0	Mm.252941	NM_148925	ENSMUSG00000025241	Fyco1	2810409M01Rik|Mem2|RUFY3|ZFYVE7	FYVE and coiled-coil domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64853438-2	chr5	64853338	64853538	+	549.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49915.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-79994143-2	chr8	79994043	79994243	+	648.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_020259, intron 7 of 12)	intron (NM_020259, intron 7 of 12)	63865.0	NM_020259	15245.0	Mm.254493	NM_020259	ENSMUSG00000064325	Hhip	Hhip1	Hedgehog-interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-134799476-4	chr4	134799389	134799589	+	942.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31485.0	NM_145554	100017.0	Mm.27486	NM_145554	ENSMUSG00000037295	Ldlrap1	AA691260|ARH2|Arh|Arh1|FHCB1|FHCB2	low density lipoprotein receptor adaptor protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-53476985-3	chr19	53476882	53477082	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12186.0	NR_028427	381232.0	Mm.248624	NR_028427	ENSMUSG00000097636	Mirt1	4833407H14Rik|5430437C04Rik|5830416P10Rik|Gm10758	myocardial infarction associated transcript 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-103805395-4	chr3	103805303	103805503	+	836.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040412, intron 4 of 4)	intron (NR_040412, intron 4 of 4)	2274.0	NR_040412	100503157.0	Mm.445554	NR_040412	ENSMUSG00000084997	Gm15471	-	predicted gene 15471	ncRNA	3.3819728400458	2.60906192917906	2.15527932125835	3.67025524673775	3.40896561263668	3.35036650993045	3.32603175452235	2.4562287183669	0.143376721765253	0.834427889859064	0.998431161219273
Merged-chr15-9123206-4	chr15	9123118	9123318	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013787, intron 5 of 9)	intron (NM_013787, intron 5 of 9)	17236.0	NM_013787	27401.0	Mm.35584	NM_013787	ENSMUSG00000054115	Skp2	4930500A04Rik|FBXL1|FWD1|p45	S-phase kinase-associated protein 2 (p45)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-173732860-1	chr1	173732760	173732960	+	790.0	f0_balb.idr	intron (NM_001204910, intron 3 of 7)	Lx7|LINE|L1	8949.0	NM_001204910	226691.0	Mm.440876	NM_001204910	ENSMUSG00000073490	Ifi207	AI607873|Pyhin-A|pyhinA	interferon activated gene 207	protein-coding	-0.0823142937122682	-0.549845457380941	-0.55368058233593	-0.556639056964938	-0.560819091796635	0.084296907995445	-0.552834770402048	-0.556122246928774	0.564731168875851	0.841006618404496	1
Merged-chr10-8519042-4	chr10	8518947	8519147	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177387)	promoter-TSS (NM_177387)	-222.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-61342735-2	chr11	61342635	61342835	+	614.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_026183)	TTS (NM_026183)	125.0	NM_001033542	380701.0	Mm.340166	NM_001033542	ENSMUSG00000069855	Slc47a2	4933429E10Rik	solute carrier family 47, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-99729098-3	chr5	99729003	99729203	+	843.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_030692)	promoter-TSS (NR_030692)	-43.0	NR_030692	319818.0	Mm.295233	NR_030692	ENSMUSG00000089809	A930011G23Rik	-	RIKEN cDNA A930011G23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-76237941-4	chr10	76237852	76238052	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_126571)	promoter-TSS (NR_126571)	-87.0	NM_133182	15468.0	Mm.32020	NM_133182	ENSMUSG00000020230	Prmt2	AI504737|Hrmt1l1	protein arginine N-methyltransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84639429-7	chr8	84639321	84639521	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007578, exon 47 of 47)	exon (NM_007578, exon 47 of 47)	23431.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-23315989-1	chr4	23315889	23316089	+	541.0	f1_balb.idr	Intergenic	ORR1A2-int|LTR|ERVL-MaLR	825441.0	NR_131335	105500046.0		NR_131335	ENSMUSG00000107859	Gm30731	Pnky|lnc-pou3f2	predicted gene, 30731	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-150651032-2	chr2	150650932	150651132	+	653.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_080575, intron 2 of 13)	intron (NM_080575, intron 2 of 13)	-16462.0	NR_040331	109344.0	Mm.440012	NR_040331	ENSMUSG00000087406	E130215H24Rik	-	RIKEN cDNA E130215H24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-47508877-4	chr19	47508793	47508993	+	917.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175360, intron 8 of 9)	intron (NM_175360, intron 8 of 9)	-4089.0	NR_045322	100503104.0	Mm.442735	NR_045322	ENSMUSG00000097990	Gm19557	-	predicted gene, 19557	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-103828999-1	chr8	103828899	103829099	+	704.0	f1_balb.idr	Intergenic	MTC|LTR|ERVL-MaLR	225200.0	NR_045730	71058.0	Mm.67707	NR_045730	ENSMUSG00000110336	4933400L20Rik	-	RIKEN cDNA 4933400L20 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-79622468-4	chr18	79622374	79622574	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19C|LTR|ERVK	-424421.0	NM_053117	93737.0	Mm.24678	NM_053117	ENSMUSG00000056214	Pard6g	2410049N21Rik|Par6a	par-6 family cell polarity regulator gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-112661247-6	chr13	112661103	112661303	+	829.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178746, intron 1 of 14)	intron (NM_178746, intron 1 of 14)	437.0	NM_178746	268706.0	Mm.40834	NM_175376	ENSMUSG00000047789	Slc38a9	4833412L08Rik|6720411P22Rik|9130023D20Rik|9430067K09Rik|A730092C09	solute carrier family 38, member 9	protein-coding	-0.0924972445783059	0.787658020255911	-0.0752320648924481	-0.0816505581104363	-0.0908680488393795	-0.065205188728841	1.02803474230519	-0.0805231800708415	0.565785584073017	0.806120271232167	1
Merged-chr10-96408038-3	chr10	96407923	96408123	+	777.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	181816.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5473286-2	chr19	5473186	5473386	+	834.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-1404.0	NM_021474	58859.0	Mm.276367	NM_021474	ENSMUSG00000024909	Efemp2	0610011K11Rik|Fbln4|MBP1	epidermal growth factor-containing fibulin-like extracellular matrix protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-14113674-1	chr14	14113574	14113774	+	561.0	f1_balb.idr	intron (NM_025550, intron 6 of 7)	intron (NM_025550, intron 6 of 7)	7230.0	NM_025550	66413.0	Mm.27591	NM_025550	ENSMUSG00000021737	Psmd6	2400006A19Rik	proteasome (prosome, macropain) 26S subunit, non-ATPase, 6	protein-coding	0.624879761407653	0.373117488355313	0.830787893460667	0.671826255568028	0.351711497711714	0.374793649146787	1.15599961911976	0.67669646778958	0.328974753472484	0.850007833043005	1
Merged-chr10-14085997-4	chr10	14085870	14086070	+	964.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010437, intron 2 of 8)	intron (NM_010437, intron 2 of 8)	119591.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	0.785586858031632	1.81036400087144	0.630732520279689	0.619710041935181	1.5744340345557	1.08681036437153	1.19990282316287	0.621650016898715	0.288825338498327	0.850589523251191	0.998431161219273
Merged-chr8-117453749-4	chr8	117453638	117453838	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_106045)	TTS (NR_106045)	715.0	NR_106045	102466801.0		NR_106045	ENSMUSG00000099062	Mir7077	Gm27774|mmu-mir-7077	microRNA 7077	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-70531485-4	chr18	70531376	70531576	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1155.0	NM_001289515	26447.0	Mm.244352	NM_011972	ENSMUSG00000038425	Poli	Rad30b	polymerase (DNA directed), iota	protein-coding	3.88862740893267	4.21757383100018	4.26570872714608	4.40900393178297	4.84183301571606	4.54723543924948	4.23819483234724	3.92044785556253	0.30200007200958	0.467574420694108	0.923770669682091
Merged-chr14-101640528-8	chr14	101640440	101640640	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033132)	promoter-TSS (NM_001033132)	-69.0	NM_001168592	66200.0	Mm.250474	NM_001033132	ENSMUSG00000075486	Commd6	1110059J08Rik|1700063H17Rik	COMM domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-101288214-1	chr3	101288114	101288314	+	637.0	f0_balb.idr	promoter-TSS (NM_013486)	promoter-TSS (NM_013486)	-275.0	NM_013486	12481.0	Mm.22842	NM_013486	ENSMUSG00000027863	Cd2	LFA-2|Ly-37|Ly37	CD2 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-102018843-2	chr7	102018743	102018943	+	673.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010531)	promoter-TSS (NM_010531)	-688.0	NM_010531	16068.0	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-106836349-4	chr13	106836244	106836444	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360897, intron 28 of 30)	intron (NM_001360897, intron 28 of 30)	100614.0	NM_001360897	76582.0	Mm.132208	NM_029665	ENSMUSG00000042590	Ipo11	1700081H05Rik|2510001A17Rik|AI314624|AW555235|E330021B14Rik|Ranbp11	importin 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-27622573-4	chr3	27622476	27622676	+	946.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356953, intron 3 of 26)	intron (NM_001356953, intron 3 of 26)	-37581.0	NR_037275	100526525.0		NR_037275	ENSMUSG00000092695	Mir3092	mir-3092|mmu-mir-3092	microRNA 3092	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-68842484-4	chr10	68842292	68842492	+	883.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	118646.0	NM_177794	327766.0	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114729026-2	chr11	114728926	114729126	+	904.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001034878, intron 1 of 12)	intron (NM_001034878, intron 1 of 12)	1614.0	NM_001034878	432611.0	Mm.212764	NM_001034878	ENSMUSG00000034706	Dnaic2	C030015H18Rik|Dnai2|Gm728|b2b3405Clo	dynein, axonemal, intermediate chain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-146752960-1	chr3	146752860	146753060	+	708.0	f0_balb.idr	intron (NM_001164200, intron 3 of 9)	intron (NM_001164200, intron 3 of 9)	17278.0	NM_001164198	18749.0	Mm.16766	NM_011100	ENSMUSG00000005034	Prkacb	CbPKA|Pkacb	protein kinase, cAMP dependent, catalytic, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43287553-4	chr4	43287440	43287640	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177195, intron 2 of 28)	MTE2b|LTR|ERVL-MaLR	20381.0	NM_177195	320571.0	Mm.74465	NM_177195	ENSMUSG00000028457	Atp8b5	4930417M19Rik|Feta	ATPase, class I, type 8B, member 5	protein-coding	5.18685047563416	5.68278271593889	5.64740223020792	4.83112813634167	5.11975993150186	3.24810554844043	5.24305061099188	4.44644083926085	-0.777769529042596	0.0575399335997464	0.355183651313586
Merged-chr1-88214772-2	chr1	88214672	88214872	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_201645, intron 1 of 4)	intron (NM_201645, intron 1 of 4)	2813.0	NM_201645	394436.0	Mm.300095	NM_201645	ENSMUSG00000089960	Ugt1a1	Gnt1|UDPGT 1-1|UGT1A01|Udpgt-1a|UgtBr1	UDP glucuronosyltransferase 1 family, polypeptide A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-116597601-4	chr4	116597518	116597718	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029450)	promoter-TSS (NR_029450)	12.0	NR_029450	654318.0	Mm.255685	NR_029450	ENSMUSG00000085408	C530005A16Rik	D930044c15rik	RIKEN cDNA C530005A16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-61998997-4	chr15	61998914	61999114	+	998.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13673.0	NM_001177352	17869.0	Mm.2444	NM_010849	ENSMUSG00000022346	Myc	AU016757|Myc2|Niard|Nird|bHLHe39	myelocytomatosis oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-164757233-2	chr1	164757133	164757333	+	677.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2c|LINE|L2	-39430.0	NM_019759	56429.0	Mm.28935	NM_019759	ENSMUSG00000026574	Dpt	1810032B19Rik|5033416F05Rik|EQ-1|Eq1	dermatopontin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-47365242-4	chr14	47365135	47365335	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8625.0	NM_010705	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	3.16252206853211	2.48525726925249	2.71152426176274	3.76331947209808	3.11272709344168	3.08670454615824	3.44761532529103	3.41841928488345	0.227021772888727	0.717993561947858	0.998431161219273
Merged-chr11-117847636-4	chr11	117847543	117847743	+	884.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER4A|LTR|ERVK	-1594.0	NM_001012273	11799.0	Mm.8552	NM_009689	ENSMUSG00000017716	Birc5	AAC-11|Api4|TIAP|survivin40	baculoviral IAP repeat-containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69891050-2	chr11	69890950	69891150	+	807.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_153788, intron 2 of 21)	intron (NM_153788, intron 2 of 21)	4489.0	NM_153788	216859.0	Mm.288671	NM_153788	ENSMUSG00000001588	Acap1	Centb1	ArfGAP with coiled-coil, ankyrin repeat and PH domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-77533510-2	chr10	77533410	77533610	+	949.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008404, intron 1 of 15)	intron (NM_008404, intron 1 of 15)	3162.0	NM_008404	16414.0	Mm.1137	NM_008404	ENSMUSG00000000290	Itgb2	2E6|AI528527|Cd18|LAD|LCAMB|Lfa1|MF17	integrin beta 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-73950215-2	chr9	73950115	73950315	+	616.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16648.0	NM_001081153	208898.0	Mm.41035	NM_001081153	ENSMUSG00000062151	Unc13c	1500037O19Rik|AU019458|D9Ertd414e|Munc13-3|Unc13h3	unc-13 homolog C (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65523565-2	chr9	65523465	65523665	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56522.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97704016-2	chr11	97703916	97704116	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011971, intron 2 of 5)	intron (NM_011971, intron 2 of 5)	582.0	NM_011971	26446.0	Mm.21874	NM_011971	ENSMUSG00000069744	Psmb3	AL033320|C10-II	proteasome (prosome, macropain) subunit, beta type 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-49855418-1	chr11	49855318	49855518	+	840.0	f0_c57.idr	intron (NM_016961, intron 2 of 11)	intron (NM_016961, intron 2 of 11)	8667.0	NM_016961	26420.0	Mm.68933	NM_016961	ENSMUSG00000020366	Mapk9	AI851083|JNK2|Prkm9|p54aSAPK	mitogen-activated protein kinase 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-60776244-6	chr11	60776111	60776311	+	786.766663	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009410, intron 1 of 18)	intron (NM_009410, intron 1 of 18)	1154.0	NM_009410	21975.0	Mm.10708	NM_009410	ENSMUSG00000002814	Top3a	-	topoisomerase (DNA) III alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-99393254-4	chr10	99393164	99393364	+	929.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	130033.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-136321541-4	chr7	136321440	136321640	+	921.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27875.0	NR_040459	330664.0	Mm.127762	NR_040459	ENSMUSG00000109633	C230079O03Rik	C230079O03	RIKEN cDNA C230079O03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-121336247-2	chr9	121336147	121336347	+	950.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_152160, intron 1 of 17)	intron (NR_152160, intron 1 of 17)	-30711.0	NM_001357973	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56829854-2	chr17	56829754	56829954	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009056, intron 1 of 16)	CpG	1154.0	NM_009056	19725.0	Mm.102	NM_009056	ENSMUSG00000024206	Rfx2	5430432H19Rik	regulatory factor X, 2 (influences HLA class II expression)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-66954376-4	chr10	66954305	66954505	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34021.0	NR_138561	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-72876568-2	chr5	72876468	72876668	+	930.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8120.0	NM_001113460	21682.0	Mm.319581	NM_013689	ENSMUSG00000029217	Tec	-	tec protein tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120490934-3	chr8	120490833	120491033	+	853.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198671, intron 1 of 15)	intron (NM_198671, intron 1 of 15)	2067.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32499479-3	chr2	32499345	32499545	+	948.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME2|LINE|L1	-35914.0	NM_153560	98952.0	Mm.4065	NM_153560	ENSMUSG00000039157	Fam102a	AI426465|C230093N12Rik|Eeig1	family with sequence similarity 102, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80402202-4	chr7	80402087	80402287	+	977.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081454, intron 1 of 15)	CpG	625.0	NM_011046	18550.0	Mm.5241	NM_011046	ENSMUSG00000030530	Furin	9130404I01Rik|Fur|PACE|Pcsk3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43524878-1	chr4	43524778	43524978	+	559.0	f1_c57bl6.idr	Intergenic	Intergenic	-1324.0	NM_001277875	22004.0	Mm.646	NM_009416	ENSMUSG00000028464	Tpm2	Tpm-2|Trop-2	tropomyosin 2, beta	protein-coding	-0.132713614417833	-0.466277070224012	-0.0495763560290157	-0.321872108284326	-0.342516392990281	-0.465546656913007	-0.468794079944365	-0.471547008220089	-2.40873563445045	0.32392021387699	1
Merged-chr7-35066840-4	chr7	35066737	35066937	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-10271.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-92989242-2	chr6	92989222	92989422	+	662.75	f0_balb.idr|f1_balb.idr	intron (NR_015530, intron 1 of 2)	intron (NR_015530, intron 1 of 2)	48740.0	NR_015530	330385.0	Mm.483472	NR_015530	ENSMUSG00000097462	9530026P05Rik	B430306B02	RIKEN cDNA 9530026P05 gene	ncRNA	-0.769447330498568	-0.758914258078391	-0.424544756161183	-0.765025305517368	-0.76878933793815	-0.115356986226019	-0.761602225679867	-0.764560134479015	1.17786394964713	0.690809539413258	1
Merged-chr13-24800750-4	chr13	24800624	24800824	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024473)	promoter-TSS (NM_024473)	-933.0	NM_024473	79555.0	Mm.266668	NM_024473	ENSMUSG00000019132	BC005537	8030460C05Rik|C78201	cDNA sequence BC005537	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-66624528-1	chr9	66624428	66624628	+	578.0	f0_balb.idr	Intergenic	Intergenic	-31413.0	NM_001302116	235441.0	Mm.32465	NM_144937	ENSMUSG00000032376	Usp3	AA409661|BC017156	ubiquitin specific peptidase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-30772459-1	chr10	30772359	30772559	+	608.0	f0_balb.idr	intron (NM_001358842, intron 1 of 14)	intron (NM_001358842, intron 1 of 14)	30867.0	NM_001358841	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-82881931-3	chr6	82881824	82882024	+	924.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040520)	promoter-TSS (NR_040520)	-71.0	NR_040520	69652.0	Mm.96357	NR_040520	ENSMUSG00000100291	2310069B03Rik	-	RIKEN cDNA 2310069B03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-8844953-2	chr19	8844853	8845053	+	709.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008144, intron 3 of 10)	intron (NM_008144, intron 3 of 10)	4450.0	NM_001290823	14705.0	Mm.345134	NM_008144	ENSMUSG00000071657	Bscl2	2900097C17Rik|AI046355|Gng3lg	Berardinelli-Seip congenital lipodystrophy 2 (seipin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-100582629-4	chr5	100582533	100582733	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10428.0	NM_139198	231507.0	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-89098288-4	chr11	89098192	89098392	+	940.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	24451.0	NM_001033266	217071.0	Mm.342127	NM_001033266	ENSMUSG00000072553	Gm525	-	predicted gene 525	protein-coding	3.15122858842357	2.4510732749362	3.12644685995728	3.58731003826566	2.04289291229496	2.29858170203902	2.65925135527205	2.15006804692519	-1.63348453888502	0.0258868343742827	0.214594821848902
Merged-chr13-80310131-2	chr13	80310031	80310231	+	906.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	-573253.0	NR_153410	105171.0	Mm.423137	NM_001042591	ENSMUSG00000074794	Arrdc3	AI450344|mKIAA1376	arrestin domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-59559203-4	chr16	59559113	59559313	+	924.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3461.0	NM_174848	224273.0	Mm.246424	NM_174848	ENSMUSG00000022723	Crybg3	5031404N19|AU022790|Gm9581	beta-gamma crystallin domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-7964665-4	chr14	7964569	7964769	+	962.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_007870)	TTS (NM_007870)	29513.0	NM_007870	13421.0	Mm.272258	NM_007870	ENSMUSG00000025279	Dnase1l3	DNasegamma|Dhp2|Lsd	deoxyribonuclease 1-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-35707095-3	chr8	35706991	35707191	+	757.377747	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-118071.0	NR_040376	100504714.0	Mm.381744	NR_040376	ENSMUSG00000097357	Gm16793	-	predicted gene, 16793	ncRNA	2.88658419409601	3.38996898937772	2.75555638469374	3.11771934394503	2.04277861252177	1.57388940552947	3.15354451759332	2.57700699157014	-1.08446324978121	0.161661923337652	0.62258209970717
Merged-chr2-164861645-2	chr2	164861555	164861755	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3947.0	NM_011125	18830.0	Mm.6105	NM_011125	ENSMUSG00000017754	Pltp	Bpife|OD107	phospholipid transfer protein	protein-coding	0.891240682093621	0.739946607108566	1.35334314148951	0.702953909297814	0.678845984781155	1.24125453829022	2.28824190771343	2.06023183833805	2.67175600445566	0.0599528027913214	0.362881725075666
Merged-chr10-37280082-4	chr10	37279971	37280171	+	855.8875119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-141145.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-61134230-4	chr10	61134111	61134311	+	995.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009163, intron 2 of 14)	RLTR17|LTR|ERVK	13473.0	NM_009163	20397.0	Mm.412319	NM_009163	ENSMUSG00000020097	Sgpl1	AI428538|D10Xrf456|S1PL|Spl	sphingosine phosphate lyase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-50563339-2	chr9	50563239	50563439	+	808.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008360, intron 2 of 7)	intron (NM_008360, intron 2 of 7)	-2071.0	NM_025687	66654.0	Mm.442255	NM_025687	ENSMUSG00000032065	Tex12	5730518K06Rik	testis expressed gene 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91082300-5	chr2	91082174	91082374	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11959.0	NM_001290765	68427.0	Mm.192375	NM_026721	ENSMUSG00000002105	Slc39a13	1100001L14Rik|AA387663|ZIP-13|ZIP13	solute carrier family 39 (metal ion transporter), member 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-116181014-3	chr6	116180918	116181118	+	718.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177412, intron 1 of 5)	RLTR34D_MM|LTR|ERVK	12356.0	NM_177412	330401.0	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-121930774-2	chr14	121930676	121930876	+	577.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026861, intron 4 of 8)	L1ME3A|LINE|L1	-15002.0	NM_182806	110168.0	Mm.37405	NM_182806	ENSMUSG00000050350	Gpr18	-	G protein-coupled receptor 18	protein-coding	0.997430603802173	2.05989852755651	2.17400491430183	1.56996418666879	1.9263698311739	1.06622189457136	1.62851643072574	1.57805334003866	-0.585898369248787	0.622500215252813	0.979980438585101
Merged-chr1-152697626-3	chr1	152697523	152697723	+	909.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346117, intron 1 of 18)	ORR1D1|LTR|ERVL-MaLR	-52928.0	NM_001081197	71281.0	Mm.158650	NM_001081197	ENSMUSG00000055547	Apobec4	4933431M11Rik	apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 4 (putative)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135693686-1	chr5	135693586	135693786	+	603.0	f1_balb.idr	intron (NM_008898, intron 1 of 15)	intron (NM_008898, intron 1 of 15)	4541.0	NM_008898	18984.0	Mm.3863	NM_008898	ENSMUSG00000005514	Por	4933424M13Rik|CPR|CYPOR|P450R	P450 (cytochrome) oxidoreductase	protein-coding	0.70054712690119	0.698566680124646	1.20518582615993	0.308986927845758	0.81400094166236	0.32471842320144	0.316828606922518	0.310055465000204	-1.80601290536374	0.335186368653134	1
Merged-chr6-91703496-4	chr6	91703387	91703587	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009320, intron 2 of 14)	MIRb|SINE|MIR	19420.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117945216-2	chr11	117945116	117945316	+	872.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24150.0	NM_007707	12702.0	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-74237080-4	chr1	74237006	74237206	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357387, intron 2 of 10)	CpG	589.0	NM_029711	76709.0	Mm.337038	NM_029711	ENSMUSG00000006304	Arpc2	2210023N03Rik|34kDa|p34-Arc	actin related protein 2/3 complex, subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-40166561-2	chr15	40166461	40166661	+	928.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_155349, intron 2 of 2)	intron (NR_155349, intron 2 of 2)	3954.0	NR_155349	102636151.0	Mm.321976	NR_155349	ENSMUSG00000115367	Gm33301	-	predicted gene, 33301	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-113061704-2	chr6	113061604	113061804	+	640.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008188, intron 5 of 9)	B4A|SINE|B4	15402.0	NM_008188	14911.0	Mm.781	NM_008188	ENSMUSG00000030264	Thumpd3	AW556087|Gt(ROSA)26asSor|Gtrosa26as	THUMP domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-11006115-2	chr4	11006015	11006215	+	680.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175175, intron 1 of 1)	intron (NM_175175, intron 1 of 1)	1504.0	NM_175175	71801.0	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-47080566-5	chr4	47080486	47080686	+	894.8666380000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11367.0	NM_172693	230145.0	Mm.132246	NM_172693	ENSMUSG00000039774	Galnt12	9130206E10|A630062B03Rik	polypeptide N-acetylgalactosaminyltransferase 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-66182773-4	chr14	66182668	66182868	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 5 of 30)	intron (NM_001162366, intron 5 of 30)	31056.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-168574092-3	chr2	168574005	168574205	+	830.077759	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291169, intron 1 of 10)	intron (NM_001291169, intron 1 of 10)	16260.0	NM_001291178	18019.0	Mm.116802	NM_010899	ENSMUSG00000027544	Nfatc2	AI607462|NF-ATc2|NF-ATp|NFAT1|NFAT1-D|Nfatp	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-13848538-2	chr16	13848438	13848638	+	548.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039533, intron 13 of 22)	intron (NM_001039533, intron 13 of 22)	29287.0	NM_001346111	18203.0	Mm.380410	NM_010946	ENSMUSG00000022681	Ntan1	PNAA|PNAD	N-terminal Asn amidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-87190879-4	chr14	87190789	87190989	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49665.0	NM_019670	56419.0	Mm.440585	NM_019670	ENSMUSG00000022021	Diaph3	4930417P13Rik|Dia2|Diap3|Drf3|p134MDia2	diaphanous related formin 3	protein-coding	6.08910995479433	6.09081494820783	5.69875874475735	6.46865471673273	5.38428490016848	5.42702401705497	4.49349641831807	5.18981591167549	-1.06004137488059	0.000227896340117273	0.00597008796665293
Merged-chr17-34980764-4	chr17	34980686	34980886	+	889.224976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-1068.0	NM_001110101	27756.0	Mm.165735	NM_030597	ENSMUSG00000007050	Lsm2	D17H6S56E-2|D17H6S56E2|Dmapl|Dmpkap|G7b|Sm-X5|SmX5|snRNP	LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115515551-2	chr11	115515451	115515651	+	652.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1158.0	NM_008258	15374.0	Mm.1775	NM_008258	ENSMUSG00000020737	Jpt1	Hn1	Jupiter microtubule associated homolog 1	protein-coding	2.43384996665909	2.43183684701355	1.2829049013992	2.72863218116579	1.7972837175418	2.4505316717871	1.29057514009446	2.74300328172237	-0.283499533951284	0.780281419464312	0.998431161219273
Merged-chr4-10972808-1	chr4	10972708	10972908	+	585.0	f0_balb.idr	Intergenic	Intergenic	34811.0	NM_175175	71801.0	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-68951863-2	chr11	68951763	68951963	+	599.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177566, intron 5 of 15)	intron (NM_177566, intron 5 of 15)	4995.0	NM_177566	442801.0	Mm.376147	NM_177566	ENSMUSG00000052921	Arhgef15	D130071N09|D530030K12Rik|E5	Rho guanine nucleotide exchange factor (GEF) 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-90240863-1	chr11	90240763	90240963	+	1000.0	f0_balb.idr	Intergenic	Intergenic	-8613.0	NM_026178	67468.0	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45023898-1	chr7	45023798	45023998	+	714.666687	f0_c57.idr	Intergenic	B2_Mm1t|SINE|B2	4301.0	NM_001360133	20130.0	Mm.389894	NM_009101	ENSMUSG00000038387	Rras	AI573426	related RAS viral (r-ras) oncogene	protein-coding	-1.8429182434137	-1.8129848525291	-1.82203695700074	-1.54461076807193	-1.84081697472045	-1.81102322372834	-1.81998775896484	-1.82814164409203	-1.43114970378833	0.684630132144154	1
Merged-chr16-20325517-3	chr16	20325435	20325635	+	982.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183158)	promoter-TSS (NM_183158)	-131.0	NM_183158	224044.0	Mm.276400	NM_183158	ENSMUSG00000022818	Cyp2ab1	EG224044|F730023N20	cytochrome P450, family 2, subfamily ab, polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-170155644-4	chr2	170155536	170155736	+	999.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12961.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-93217258-4	chr2	93217179	93217379	+	933.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183180, intron 5 of 9)	intron (NM_183180, intron 5 of 9)	29731.0	NM_001025246	277414.0	Mm.41033	NM_001025246	ENSMUSG00000068735	Trp53i11	Tp53i11	transformation related protein 53 inducible protein 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-43352693-3	chr11	43352631	43352831	+	754.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR11A|LTR|ERVK	21730.0	NR_029558	387164.0		NR_029558	ENSMUSG00000065601	Mir146	Mirn146|miR-146a|mmu-mir-146	microRNA 146	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-98725335-4	chr10	98725233	98725433	+	958.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-189309.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-109799474-4	chr8	109799364	109799564	+	978.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301211, intron 1 of 22)	intron (NM_001301211, intron 1 of 22)	20881.0	NM_001301211	11765.0	Mm.37210	NM_009677	ENSMUSG00000031731	Ap1g1	AA409002|AU041323|AW551707|Adtg|D8Ertd374e	adaptor protein complex AP-1, gamma 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127708358-4	chr7	127708252	127708452	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_030428)	promoter-TSS (NR_030428)	-135.0	NR_030428	791073.0		NR_030428	ENSMUSG00000076454	Mir762	Mirn762|mir-762|mmu-mir-762	microRNA 762	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165453506-4	chr2	165453414	165453614	+	980.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054055, intron 1 of 12)	intron (NM_054055, intron 1 of 12)	19683.0	NM_054055	114644.0	Mm.250738	NM_054055	ENSMUSG00000018459	Slc13a3	NaDC-3|NaDC3|SDCT2	solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3	protein-coding	0.569890872215696	0.12552293229574	0.77465234547398	0.115585600027814	0.375154375383265	0.126788533742714	0.445650002025408	0.116341155018023	-1.13958566696825	0.575921913055569	1
Merged-chr2-166140652-3	chr2	166140569	166140769	+	704.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028072, intron 1 of 20)	intron (NM_028072, intron 1 of 20)	14616.0	NM_001355619	72043.0	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76660208-4	chr15	76660112	76660312	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358912)	promoter-TSS (NM_001358912)	-4.0	NM_019396	54151.0	Mm.247752	NM_019396	ENSMUSG00000053929	Cyhr1	1110031M01Rik|AU042374|Chrp	cysteine and histidine rich 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81927271-1	chr15	81927171	81927371	+	543.0	f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-1058.0	NM_030229	78929.0	Mm.215115	NM_030229	ENSMUSG00000022476	Polr3h	5031409G22Rik|RPC8	polymerase (RNA) III (DNA directed) polypeptide H	protein-coding	-0.953721354153451	-1.41025554057125	-1.42001056191158	-1.42802362688808	-1.44024889148474	-1.40814158675276	-1.41780223890411	-1.42658929208844	-2.11310844444413	0.543369238581748	1
Merged-chr1-54798636-4	chr1	54798522	54798722	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081433, intron 2 of 27)	intron (NM_001081433, intron 2 of 27)	127765.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-33040971-4	chr12	33040878	33041078	+	974.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024478, intron 15 of 19)	intron (NM_001024478, intron 15 of 19)	51897.0	NM_001024478	68764.0	Mm.60083	NM_001024478	ENSMUSG00000035860	Cdhr3	1110049B09Rik|BB172694|Cdh28	cadherin-related family member 3	protein-coding	4.23150866859679	4.41626961060898	3.57084167311787	4.2191887874668	3.73727978062754	3.30687024807709	3.41129725392017	3.39845482068526	-0.95220125467778	0.0486016479645046	0.32086715275759
Merged-chr4-133423331-2	chr4	133423215	133423415	+	988.083374	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001358455, exon 12 of 12)	3' UTR (NM_001358455, exon 12 of 12)	53539.0	NR_039582	100628620.0		NR_039582	ENSMUSG00000092745	Mir5122	mmu-mir-5122|mu-mir-5122	microRNA 5122	ncRNA	2.2136168435434	1.29241224503328	1.26094720939319	2.51951436343061	1.76461860372427	2.4019253550237	2.52548225699943	2.6140849935668	0.954197120934836	0.34772118909407	0.847729374170411
Merged-chr13-104108701-4	chr13	104108556	104108756	+	907.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029447, intron 1 of 12)	intron (NM_029447, intron 1 of 12)	958.0	NM_029447	75805.0	Mm.127692	NM_029447	ENSMUSG00000021710	Nln	4930472G13Rik|C79345	neurolysin (metallopeptidase M3 family)	protein-coding	2.68792810839846	2.65795114257414	3.68220249560257	3.68825450043616	2.06439558606046	2.8182860803102	1.52931064765713	3.42242425453524	-1.04944857122412	0.182158574158847	0.656035795965261
Merged-chr12-98746319-4	chr12	98746228	98746428	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001160107)	promoter-TSS (NM_001160107)	-640.0	NM_001160107	75553.0	Mm.25549	NM_029334	ENSMUSG00000021012	Zc3h14	1010001P15Rik|1700016A15Rik|2700069A02Rik|AU014748	zinc finger CCCH type containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-57641137-2	chr9	57641037	57641237	+	607.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001304761, intron 2 of 14)	intron (NM_001304761, intron 2 of 14)	4516.0	NM_007783	12988.0	Mm.21974	NM_007783	ENSMUSG00000032312	Csk	AW212630|p50CSK	c-src tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-9881316-1	chr2	9881216	9881416	+	658.0	f0_balb.idr	promoter-TSS (NR_024257)	promoter-TSS (NR_024257)	70.0	NR_024257	381347.0	Mm.441450	NR_024257		4930412O13Rik	Gm10853	RIKEN cDNA 4930412O13 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71374548-1	chr8	71374448	71374648	+	556.0	f1_c57bl6.idr	TTS (NM_029865)	TTS (NM_029865)	3250.0	NM_001293800	77090.0	Mm.440170	NM_029865	ENSMUSG00000002396	Ocel1	9430098E02Rik|AI326022|AI593544	occludin/ELL domain containing 1	protein-coding	-0.744583320681159	-1.08907322251399	-0.785644459993082	-1.107169678969	-1.10976210705869	-1.08671647804793	-1.09748667004409	-1.10684838342435	-2.59718020795451	0.420837302388055	1
Merged-chr7-35118421-7	chr7	35118329	35118529	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001287523)	promoter-TSS (NM_001287523)	-864.0	NM_001287521	12606.0	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-73801007-2	chr13	73800907	73801107	+	807.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_011390, exon 17 of 24)	exon (NM_011390, exon 17 of 24)	37310.0	NM_011390	20499.0	Mm.275800	NM_011390	ENSMUSG00000017756	Slc12a7	AA408796|D13Ertd261e|Kcc4	solute carrier family 12, member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-47589340-1	chr9	47589240	47589440	+	556.0	f1_balb.idr	intron (NM_001025600, intron 1 of 8)	MTD|LTR|ERVL-MaLR	58988.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	0.580612375224057	0.618048290829407	1.48234706604225	0.596530869995816	1.50830443817945	0.620747093540397	1.49754451885081	0.962298960424009	1.27066277777646	0.439272078937625	0.909130714404946
Merged-chr13-43779182-4	chr13	43779058	43779258	+	972.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5954.0	NM_009856	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-34645418-2	chr13	34645318	34645518	+	574.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025831, intron 1 of 4)	intron (NM_025831, intron 1 of 4)	7263.0	NM_025831	66895.0	Mm.28943	NM_025831	ENSMUSG00000021411	Pxdc1	1300014I06Rik	PX domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115161861-5	chr11	115161834	115162034	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001163753, exon 9 of 9)	3' UTR (NM_001163753, exon 9 of 9)	-1407.0	NM_012030	26941.0	Mm.27842	NM_012030	ENSMUSG00000020733	Slc9a3r1	EBP-50|NHE-RF|NHERF-1|NHERF1	solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-79535786-2	chr3	79535686	79535886	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162999, intron 1 of 16)	intron (NM_001162999, intron 1 of 16)	31893.0	NM_001162999	329679.0	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-41191291-4	chr9	41191188	41191388	+	886.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14867.0	NR_040392	78500.0	Mm.275715	NR_040392	ENSMUSG00000100837	1700063D05Rik	-	RIKEN cDNA 1700063D05 gene	ncRNA	2.83484227862755	2.25257956992713	3.2126862931101	1.94340686606941	2.51900222340467	2.2688433933902	3.01094962729415	2.7448893311958	0.00248335847951809	0.997444495208155	0.999268611847349
Merged-chr8-125054697-4	chr8	125054559	125054759	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_174854, intron 1 of 12)	CpG	464.0	NM_174854	244667.0	Mm.233504	NM_170596	ENSMUSG00000043051	Disc1	-	disrupted in schizophrenia 1	protein-coding	3.22653094531269	3.26907708118896	3.33724615361607	2.61723254592551	3.02249640436534	3.70721210170176	3.7198942007162	2.12915073641526	0.241125806185895	0.714862831605114	0.998431161219273
Merged-chr4-33309487-2	chr4	33309387	33309587	+	841.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011884)	promoter-TSS (NM_011884)	-824.0	NM_011884	24018.0	Mm.240024	NM_011884	ENSMUSG00000028274	Rngtt	AU020997|HCE|MCE1	RNA guanylyltransferase and 5'-phosphatase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-3345416-2	chr9	3345316	3345516	+	900.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026303, intron 4 of 11)	intron (NM_026303, intron 4 of 11)	10185.0	NM_026303	67667.0	Mm.116968	NM_026303	ENSMUSG00000025899	Alkbh8	4930562C03Rik|8030431D03Rik|9430088N01Rik|Abh8	alkB homolog 8, tRNA methyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-56703001-4	chr13	56702948	56703148	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164042)	promoter-TSS (NM_001164042)	-4.0	NM_001164041	17129.0	Mm.272920	NM_008541	ENSMUSG00000021540	Smad5	1110051M15Rik|AI451355|Dwf-C|Madh5|MusMLP	SMAD family member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-117553522-2	chr12	117553419	117553619	+	842.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_175930, intron 3 of 27)	intron (NM_175930, intron 3 of 27)	37040.0	NM_175930	217944.0	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding	2.0207858514085	1.69865467161896	1.21511401177253	2.55348122035764	2.03786652599601	1.71035524654156	1.65747272977676	2.4951792422341	0.122594951461797	0.905514808854314	0.998431161219273
Merged-chr6-108832427-4	chr6	108832320	108832520	+	984.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138677, intron 1 of 11)	intron (NM_138677, intron 1 of 11)	3779.0	NM_138677	192193.0	Mm.21596	NM_138677	ENSMUSG00000030104	Edem1	A130059K23Rik|EDEM|mKIAA0212	ER degradation enhancer, mannosidase alpha-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-57927923-2	chr9	57927823	57928023	+	894.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027086, intron 10 of 10)	Lx8|LINE|L1	-12212.0	NM_011352	20361.0	Mm.335187	NM_011352	ENSMUSG00000038264	Sema7a	2900057C09Rik|CDw108|H-Sema-L|M-Sema-L|Semal	sema domain, immunoglobulin domain (Ig), and GPI membrane anchor, (semaphorin) 7A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80317214-4	chr10	80317131	80317331	+	926.2291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011789, exon 14 of 14)	3' UTR (NM_011789, exon 14 of 14)	3317.0	NM_025521	66374.0	Mm.383824	NM_025521	ENSMUSG00000020133	2310011J03Rik	AI452186|AW545358	RIKEN cDNA 2310011J03 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24285898-3	chr17	24285790	24285990	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001031621, intron 21 of 29)	intron (NM_001031621, intron 21 of 29)	-34481.0	NM_007634	12449.0	Mm.77695	NM_007634	ENSMUSG00000072082	Ccnf	CycF|Fbxo1	cyclin F	protein-coding	2.37739905942119	1.561002605764	2.62387673366641	1.43107112820818	4.04488739499607	3.64834524258485	4.35801537996868	4.3126545234768	3.36434322155951	1.07881809334306e-06	6.8566243097163e-05
Merged-chr7-34957022-3	chr7	34956923	34957123	+	987.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008820, intron 7 of 14)	intron (NM_008820, intron 7 of 14)	44616.0	NM_008820	18624.0	Mm.69751	NM_008820	ENSMUSG00000063931	Pepd	Pep-4|Pep4|dal	peptidase D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-74673038-2	chr5	74672937	74673137	+	746.75	f0_balb.idr|f1_balb.idr	intron (NM_001159578, intron 1 of 12)	intron (NM_001159578, intron 1 of 12)	4835.0	NM_001159580	16924.0	Mm.440403	NM_010727	ENSMUSG00000029228	Lnx1	Lnx	ligand of numb-protein X 1	protein-coding	0.883574678102263	1.42334204478928	0.930888025565934	0.913529347197932	1.66912080119811	2.12935023466873	1.94454971443493	2.22957522444273	3.83668733432079	0.00564035727855543	0.0730810006783024
Merged-chr2-27723728-2	chr2	27723628	27723828	+	897.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290482, intron 1 of 9)	intron (NM_001290482, intron 1 of 9)	13145.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-110458883-4	chr12	110458700	110458900	+	996.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001135001, intron 2 of 13)	L1MA5A|LINE|L1	11621.0	NM_001135001	26931.0	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-170218600-4	chr2	170218470	170218670	+	994.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-75895.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	1.46173499017924	1.65421592971498	1.59353254624529	0.906833460844033	1.8391128390454	1.79120391557026	0.923147225826447	1.11286346758441	0.179388401246648	0.889327320182773	0.998431161219273
Merged-chr13-113600855-4	chr13	113600761	113600961	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130796, intron 1 of 1)	intron (NM_130796, intron 1 of 1)	17703.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101447691-2	chr11	101447591	101447791	+	901.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027320)	promoter-TSS (NM_027320)	-721.0	NM_027320	70110.0	Mm.45558	NM_027320	ENSMUSG00000010358	Ifi35	2010008K16Rik|AW986054|IFP35|ifi-35	interferon-induced protein 35	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3936639-2	chr4	3936539	3936739	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019969, intron 1 of 5)	intron (NM_019969, intron 1 of 5)	1766.0	NM_019969	56711.0	Mm.331467	NM_019969	ENSMUSG00000003282	Plag1	-	pleiomorphic adenoma gene 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-121500224-3	chr10	121500109	121500309	+	848.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23959.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	0.807410715384833	0.459692120666426	1.01123949697563	0.865404718339122	0.81615653690454	0.461306934219707	0.909179124892414	0.447965380533438	-0.719643394782039	0.670717643737472	1
Merged-chr7-80011054-2	chr7	80010954	80011154	+	572.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	-13760.0	NM_001145999	209225.0	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-24427282-2	chr5	24427182	24427382	+	831.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253892)	promoter-TSS (NM_001253892)	-239.0	NM_001253892	20535.0	Mm.4580	NM_009207	ENSMUSG00000028962	Slc4a2	Ae2|B3RP	solute carrier family 4 (anion exchanger), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-139232246-3	chr4	139232143	139232343	+	879.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	38132.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	-0.413270832553205	0.248879758316469	-0.403519686790488	-0.4071766335812	-0.41236239857827	0.260274020124072	-0.402476173372258	-0.406537021983025	0.0394809277679939	0.98817139586833	1
Merged-chr10-120864568-2	chr10	120864468	120864668	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177092, intron 2 of 6)	intron (NM_177092, intron 2 of 6)	6939.0	NR_038023	100504616.0	Mm.451174	NR_038023	ENSMUSG00000087480	Gm15910	-	predicted gene 15910	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-23256935-2	chr11	23256835	23257035	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001035226, intron 2 of 25)	intron (NM_001035226, intron 2 of 25)	894.0	NM_134014	103573.0	Mm.217547	NM_134014	ENSMUSG00000020290	Xpo1	AA420417|Crm1|Exp1	exportin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-93443188-2	chr15	93443088	93443288	+	622.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358750, intron 4 of 6)	B4|SINE|B4	44724.0	NM_001285863	223828.0	Mm.74208	NM_146062	ENSMUSG00000036167	Pphln1	CR|HSPC206|HSPC232	periphilin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-105964710-4	chr1	105964603	105964803	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	25579.0	NR_151625	635504.0	Mm.359717	NR_151625		Gm7160	EG635504	predicted gene 7160	ncRNA	3.96666824698508	4.30694820520464	3.69448323875724	4.63624398254114	2.95030347278044	3.46175534027775	4.20196745351291	4.23874021894101	-0.525348501373022	0.297133362232161	0.80018568054389
Merged-chr10-80790971-2	chr10	80790871	80791071	+	709.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_199322, exon 27 of 28)	exon (NM_199322, exon 27 of 28)	7655.0	NM_023900	78670.0	Mm.41479	NM_023900	ENSMUSG00000035278	Plekhj1	9530063M10Rik	pleckstrin homology domain containing, family J member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55015303-4	chr14	55015204	55015404	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026890)	promoter-TSS (NM_026890)	-150.0	NM_026890	68966.0	Mm.21214	NM_026890	ENSMUSG00000022204	Ngdn	1500001L15Rik|Ngd|neuroguidin	neuroguidin, EIF4E binding protein	protein-coding	4.70171310176871	5.22362498494886	5.74577019243284	5.41389632145743	5.62385259490352	5.33313472647133	5.40964167200843	5.87038874222885	0.302503925066282	0.318992553831266	0.821951596143819
Merged-chr4-69484728-2	chr4	69484628	69484828	+	609.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5b|LINE|L1	-530331.0	NM_019967	56710.0	Mm.248788	NM_019967	ENSMUSG00000028351	Brinp1	BRINP|Dbc1|Dbccr1|Fam5a	bone morphogenic protein/retinoic acid inducible neural specific 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-93950163-4	chr10	93950062	93950262	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR30C_MM|LTR|ERV1	13701.0	NR_029764	723908.0		NR_029764	ENSMUSG00000065607	Mir331	Mirn331|mmu-mir-331	microRNA 331	ncRNA	6.44342122800558	6.29011361817814	6.56372843102027	6.31429379619066	5.13158984807649	5.6711283304413	5.13461188590028	4.63761417440972	-1.36473429663481	1.53552265049904e-07	1.27938894171441e-05
Merged-chr1-85090754-1	chr1	85090654	85090854	+	957.1666869999999	f1_balb.idr	intron (NM_213615, intron 5 of 6)	Lx2B2|LINE|L1	19099.0	NM_213615	381287.0	Mm.487565	NM_213615	ENSMUSG00000089844	A530032D15Rik	Gm1888	RIKEN cDNA A530032D15Rik gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27190024-2	chr17	27189948	27190148	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_146075, exon 9 of 9)	3' UTR (NM_146075, exon 9 of 9)	14390.0	NM_146075	224640.0	Mm.29689	NM_146075	ENSMUSG00000044857	Lemd2	BC026588|Lem2|NET25	LEM domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-98477888-3	chr15	98477801	98478001	+	943.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4782.0	NM_010679	16770.0	Mm.5074	NM_010679	ENSMUSG00000022991	Lalba	AW208827|Lyzg	lactalbumin, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-71898648-2	chr2	71898548	71898748	+	791.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360002, intron 10 of 10)	intron (NM_001360002, intron 10 of 10)	23744.0	NM_001360002	228026.0	Mm.34411	NM_172665	ENSMUSG00000006494	Pdk1	B830012B01|D530020C15Rik	pyruvate dehydrogenase kinase, isoenzyme 1	protein-coding	-2.05752322593321	-2.15521190974092	-2.16307242109104	-2.16952927915413	-2.17938029103484	-2.15350850414045	-2.16129297361887	-2.16837350464794	-0.683654500252594	0.846597994014493	1
Merged-chr19-53143336-4	chr19	53143242	53143442	+	882.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013758)	promoter-TSS (NM_013758)	586.0	NM_001164100	27360.0	Mm.426080	NM_013758	ENSMUSG00000025026	Add3	AI463285|R75380	adducin 3 (gamma)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-79953080-2	chr10	79952980	79953180	+	566.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007880, exon 9 of 9)	3' UTR (NM_007880, exon 9 of 9)	-7072.0	NM_175450	216156.0	Mm.35828	NM_175450	ENSMUSG00000035754	Wdr18	2310012I10Rik|AU044733|AW122032	WD repeat domain 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-43407805-3	chr7	43407716	43407916	+	764.06665	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172900)	promoter-TSS (NM_172900)	-464.0	NM_172900	243958.0	Mm.24444	NM_172900	ENSMUSG00000030468	Siglecg	9830164H23|A630096C01Rik|Siglec-G|Siglec10|mSiglec-G	sialic acid binding Ig-like lectin G	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-44487460-3	chr19	44487344	44487544	+	622.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-6028.0	NM_011720	22423.0	Mm.88365	NM_011720	ENSMUSG00000036961	Wnt8b	-	wingless-type MMTV integration site family, member 8B	protein-coding	-1.03287799375072	-1.0143607092397	-0.706004153859052	-0.610876441428553	-1.03239442210011	-1.0118937936534	-1.02316746158196	-1.02927715376315	-2.73610304975999	0.386541916379051	1
Merged-chr7-30592596-4	chr7	30592511	30592711	+	927.520874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021397, intron 1 of 5)	intron (NM_021397, intron 1 of 5)	331.0	NM_021397	58206.0	Mm.116789	NM_021397	ENSMUSG00000006310	Zbtb32	4930524C15Rik|FAXF|FAZF|PLZP|Rog|Tzfp	zinc finger and BTB domain containing 32	protein-coding	1.12517230215349	0.986848548590982	1.98772479180575	1.81128872635745	1.72261666768442	1.48317037020498	2.65602037622266	0.946677687047936	0.86658938036468	0.477285017739968	0.927980290875356
Merged-chr11-120483834-2	chr11	120483734	120483934	+	686.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027204)	promoter-TSS (NM_027204)	-803.0	NM_027204	56282.0	Mm.133851	NM_027204	ENSMUSG00000039640	Mrpl12	0610034O11Rik|1500031N16Rik|L12mt|MRP-L12|Rpml12	mitochondrial ribosomal protein L12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-36922250-3	chr19	36922142	36922342	+	865.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2643.0	NM_028263	72514.0	Mm.41674	NM_028263	ENSMUSG00000047632	Fgfbp3	2610306H15Rik|Fgf-bp3	fibroblast growth factor binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-11695619-1	chr18	11695519	11695719	+	683.0	f0_balb.idr	intron (NM_001081223, intron 5 of 18)	Lx7|LINE|L1	38270.0	NM_001081223	225182.0	Mm.154275	NM_175458	ENSMUSG00000041238	Rbbp8	9930104E21Rik|CtIP|RBBP-8|RIM|SAE2	retinoblastoma binding protein 8, endonuclease	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-146686157-4	chr6	146686103	146686303	+	995.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28985.0	NR_046277	74925.0	Mm.386304	NR_046277	ENSMUSG00000085238	4930479D17Rik	-	RIKEN cDNA 4930479D17 gene	ncRNA	4.63640467658552	4.25935502185032	3.89896783084658	3.78596245605968	5.10457935860161	4.92855651679027	4.5044153003879	4.73095224580452	0.81248902284229	0.0379850583268632	0.277194084619117
Merged-chr13-34994203-4	chr13	34994104	34994304	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_073427)	promoter-TSS (NR_073427)	-60.0	NM_001110331	23986.0	Mm.491141	NM_011868	ENSMUSG00000021417	Eci2	Acbd2|Drs1|Hca88|Peci	enoyl-Coenzyme A delta isomerase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-33340793-3	chr15	33340696	33340896	+	678.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176073, intron 4 of 7)	MLT1B|LTR|ERVL-MaLR	65143.0	NR_033608	73486.0	Mm.483393	NM_028551	ENSMUSG00000058101	1700084J12Rik	-	ribosomal protein L7-like 1 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-45566389-3	chr17	45566365	45566565	+	869.125	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001357105, exon 4 of 4)	exon (NM_001357105, exon 4 of 4)	2529.0	NM_001357105	73836.0	Mm.289716	NM_028662	ENSMUSG00000037089	Slc35b2	1110003M08Rik|AA407792|AI842275|PAPST1|Slc35b1	solute carrier family 35, member B2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-89197295-3	chr18	89197147	89197347	+	826.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178687)	promoter-TSS (NM_178687)	-180.0	NM_178687	225825.0	Mm.139293	NM_178687	ENSMUSG00000034028	Cd226	BC051526|DNAM-1|DNAM1|Pta1|TLiSA1	CD226 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-79089837-3	chr11	79089714	79089914	+	688.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013571, intron 1 of 17)	IMPB_01|Satellite|Satellite	-29978.0	NM_001348207	16706.0	Mm.4745	NM_013571	ENSMUSG00000018334	Ksr1	AW492498|B-KSR1|D11Bhm183e|D11Bhm184e|Ksr|RSU2|hb|mKSR1	kinase suppressor of ras 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-87152760-3	chr17	87152661	87152861	+	641.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42181.0	NR_046016	399626.0	Mm.396062	NR_046016		C330024C12Rik	-	RIKEN cDNA C330024C12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-74993250-4	chr11	74993150	74993350	+	860.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001002764, intron 10 of 18)	intron (NM_001002764, intron 10 of 18)	67378.0	NM_001002764	103677.0	Mm.288460	NM_001002764	ENSMUSG00000038290	Smg6	AI317223|AU041178	Smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-94501720-3	chr16	94501624	94501824	+	868.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007834, intron 6 of 7)	intron (NM_007834, intron 6 of 7)	24905.0	NM_007834	13185.0	Mm.7472	NM_007834	ENSMUSG00000022898	Dscr3	AW538125|Dcra	DSCR3 arrestin fold containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-25883562-4	chr18	25883452	25883652	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-129395.0	NM_001362334	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101251273-2	chr15	101251173	101251373	+	723.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15-int|LTR|ERVL	-15573.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5758674-2	chr17	5758574	5758774	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39983.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-134773504-3	chr4	134773394	134773594	+	742.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5490.0	NM_145554	100017.0	Mm.27486	NM_145554	ENSMUSG00000037295	Ldlrap1	AA691260|ARH2|Arh|Arh1|FHCB1|FHCB2	low density lipoprotein receptor adaptor protein 1	protein-coding	1.1729638419377	2.45035156173489	1.23766700796444	2.19329952635568	1.98800080138141	2.46915567277178	2.27743657424128	2.3079534363521	0.912158348843869	0.380010924964592	0.871963632021681
Merged-chr1-30950016-7	chr1	30949926	30950126	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_002688)	promoter-TSS (NR_002688)	-271.0	NM_011200	19243.0	Mm.491181	NM_011200	ENSMUSG00000026064	Ptp4a1	AA415290|AU019864|C130021B01|Prl-1	protein tyrosine phosphatase 4a1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-69254591-4	chr10	69254489	69254689	+	967.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252637, intron 4 of 10)	MIRb|SINE|MIR	41395.0	NM_001252638	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-24530534-4	chr7	24530447	24530647	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153134)	promoter-TSS (NM_153134)	-101.0	NM_153134	210146.0	Mm.41108	NM_153134	ENSMUSG00000041037	Irgq	AF322649|FKSG27|Irgq1	immunity-related GTPase family, Q	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-51329882-2	chr13	51329782	51329982	+	850.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-78736.0	NM_010101	13610.0	Mm.136736	NM_010101	ENSMUSG00000067586	S1pr3	AI132464|Edg3|Lpb3|S1p3	sphingosine-1-phosphate receptor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-74384045-2	chr1	74383945	74384145	+	694.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_013612, exon 12 of 15)	exon (NM_013612, exon 12 of 15)	-7564.0	NM_153088	227292.0	Mm.165042	NM_153088	ENSMUSG00000026176	Ctdsp1	GIP|NLIIF|Nif3|SCP1	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-29309791-2	chr7	29309711	29309911	+	658.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013874, intron 3 of 11)	intron (NM_013874, intron 3 of 11)	5806.0	NM_013874	29861.0	Mm.101885	NM_013874	ENSMUSG00000030584	Dpf1	Neud4	D4, zinc and double PHD fingers family 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-81622725-3	chr6	81622639	81622839	+	687.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	272924.0	NR_106091	102465711.0		NR_106091	ENSMUSG00000106154	Mir7232	mmu-mir-7232	microRNA 7232	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-80760554-2	chr1	80760454	80760654	+	895.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2001.0	NM_175291	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-86585790-4	chr11	86585663	86585863	+	971.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356531, intron 11 of 11)	intron (NM_001356531, intron 11 of 11)	-1605.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-25059192-4	chr16	25059067	25059267	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040374)	promoter-TSS (NR_040374)	-472.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27695314-2	chr2	27695214	27695414	+	738.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_011305, intron 1 of 9)	intron (NM_011305, intron 1 of 9)	-13978.0	NM_001290481	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-49981757-2	chr16	49981657	49981857	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045001, intron 1 of 3)	intron (NR_045001, intron 1 of 3)	1297.0	NR_045001	628951.0	Mm.428032	NR_045001		Gm6936	-	predicted gene 6936	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165906734-2	chr2	165906634	165906834	+	804.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-21896.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-34546510-2	chr5	34546410	34546610	+	733.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145858, intron 1 of 12)	intron (NM_001145858, intron 1 of 12)	-3066.0	NM_001145859	24055.0	Mm.5012	NM_011893	ENSMUSG00000054520	Sh3bp2	3BP2	SH3-domain binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-63066185-2	chr10	63066085	63066285	+	675.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026701, intron 2 of 8)	intron (NM_026701, intron 2 of 8)	4596.0	NM_026701	68371.0	Mm.261389	NM_026701	ENSMUSG00000112129	Pbld1	0610038K03Rik|Mawbp|Pbld	phenazine biosynthesis-like protein domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115158649-2	chr11	115158549	115158749	+	835.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_021411, intron 4 of 8)	intron (NM_021411, intron 4 of 8)	4471.0	NM_021411	58222.0	Mm.143789	NM_021411	ENSMUSG00000020732	Rab37	B230331O03Rik|B230354I04Rik	RAB37, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-53349479-2	chr11	53349379	53349579	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-1288.0	NM_033565	93736.0	Mm.395281	NM_033565	ENSMUSG00000049470	Aff4	AF5Q31|Alf4|Laf4l|MCEF	AF4/FMR2 family, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-116728438-2	chr10	116728338	116728538	+	564.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_131036)	promoter-TSS (NR_131036)	739.0	NR_045345	72286.0	Mm.396207	NR_045345	ENSMUSG00000100198	1700030O20Rik	-	RIKEN cDNA 1700030O20 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-65825910-2	chr15	65825810	65826010	+	628.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_133766, intron 5 of 22)	intron (NM_133766, intron 5 of 22)	38890.0	NM_001356582	76740.0	Mm.260647	NM_133766	ENSMUSG00000015002	Efr3a	A130089M23Rik|BB071175|C76891|C920006C10Rik|D030063F01Rik|mKIAA0143	EFR3 homolog A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-75221545-5	chr10	75221395	75221595	+	806.266663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145826, intron 1 of 18)	B1F1|SINE|Alu	9105.0	NM_001145826	74392.0	Mm.27716	NM_153406	ENSMUSG00000033444	Specc1l	4930470P14Rik|4932439K10Rik|9530057A13Rik|AI317249|Cytsa|mKIAA0376	sperm antigen with calponin homology and coiled-coil domains 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-100508779-1	chr5	100508679	100508879	+	544.0	f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-8140.0	NM_001359914	231506.0	Mm.212568	NM_172714	ENSMUSG00000035310	Lin54	AI461788	lin-54 homolog (C. elegans)	protein-coding	1.06971121767691	0.804984779835022	1.63020680696147	1.12416441385758	1.57936559209759	0.807724138515156	1.43433843067134	1.12978220477767	0.308332619377801	0.821673742598296	0.998431161219273
Merged-chr13-5805264-2	chr13	5805164	5805364	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	52828.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123891864-4	chr5	123891782	123891982	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11862.0	NM_175520	243270.0	Mm.33362	NM_175520	ENSMUSG00000049241	Hcar1	Gpr81	hydrocarboxylic acid receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-76638467-2	chr13	76638353	76638553	+	702.333374	f0_c57.idr|f1_balb.idr	intron (NM_030174, intron 1 of 20)	MIR|SINE|MIR	253492.0	NM_030174	78771.0	Mm.316249	NM_030174	ENSMUSG00000021596	Mctp1	2810465F10Rik	multiple C2 domains, transmembrane 1	protein-coding	1.50865009522956	2.11596073690373	1.06114218999969	1.20916372141936	0.804574804965848	0.85761865086401	1.67214828212193	1.36567092941015	-1.0790821268299	0.413569710391247	0.895777359238328
Merged-chr6-145301222-1	chr6	145301122	145301322	+	746.0	f1_c57bl6.idr	Intergenic	Intergenic	50670.0	NR_045598	100039495.0	Mm.121014	NR_045598	ENSMUSG00000086013	Gm15706	-	predicted gene 15706	ncRNA	1.57524767888741	1.26661647103994	1.00423714996077	1.88732437927937	1.32382003277744	2.14116320787371	2.15344674011269	1.20696876878851	0.935379233940375	0.425417677683156	0.901356553382266
Merged-chr2-26940508-2	chr2	26940408	26940608	+	578.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198628, intron 4 of 18)	intron (NM_198628, intron 4 of 18)	6439.0	NM_198628	279029.0	Mm.330079	NM_198628	ENSMUSG00000049897	Stkld1	Gm711|Sgk071	serine/threonine kinase-like domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-23810988-3	chr11	23810893	23811093	+	818.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40023.0	NM_009044	19696.0	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-160602098-2	chr2	160601998	160602198	+	705.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43799.0	NM_009408	21969.0	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-14262330-4	chr2	14262244	14262444	+	955.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008625, intron 6 of 29)	intron (NM_008625, intron 6 of 29)	1341.0	NR_030609	100124488.0		NR_030609	ENSMUSG00000077897	Mir511	Mirn511|mir-511|mmu-mir-511	microRNA 511	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-11668497-4	chr11	11668397	11668597	+	950.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17428.0	NM_009578	22778.0	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-97013581-1	chr5	97013481	97013681	+	617.0	f1_c57bl6.idr	intron (NM_080708, intron 1 of 15)	intron (NM_080708, intron 1 of 15)	15892.0	NM_080708	140780.0	Mm.281490	NM_080708	ENSMUSG00000034663	Bmp2k	4933417M22Rik|AA673486|AV128808|BIKE	BMP2 inducible kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-69403057-2	chr12	69402957	69403157	+	898.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	MERV1_LTR|LTR|ERV1	30907.0	NM_007481	11845.0	Mm.27308	NM_007481	ENSMUSG00000044147	Arf6	AI788669|AW496366	ADP-ribosylation factor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45204590-4	chr7	45204496	45204696	+	973.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_201374, exon 1 of 20)	exon (NM_201374, exon 1 of 20)	296.0	NM_201374	384619.0	Mm.214931	NM_201374	ENSMUSG00000038292	Ccdc155	Gm1434|KASH5	coiled-coil domain containing 155	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-56114664-2	chr2	56114564	56114764	+	681.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-671147.0	NR_105751	102465169.0		NR_105751	ENSMUSG00000098437	Mir195b	Gm27491|mmu-mir-195b	microRNA 195b	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-9635361-2	chr4	9635256	9635456	+	835.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177856, intron 4 of 4)	Lx2B2|LINE|L1	8361.0	NM_001177853	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-25464454-4	chr10	25464370	25464570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358754, intron 4 of 16)	intron (NM_001358754, intron 4 of 16)	56102.0	NM_013511	13822.0	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-80493150-3	chr8	80493109	80493309	+	923.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010369)	promoter-TSS (NM_010369)	-836.0	NM_010369	14934.0	Mm.13123	NM_010369	ENSMUSG00000051839	Gypa	AI853584|CD235a|GPA	glycophorin A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41483202-4	chr19	41483112	41483312	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-42040.0	NM_001326287	627352.0	Mm.395111	NM_001326287		Morf4l1b	EG627352|Gm6747	mortality factor 4 like 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-117681627-2	chr12	117681502	117681702	+	599.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175930, intron 11 of 27)	L2c|LINE|L2	-162259.0	NM_146040	217946.0	Mm.281149	NM_146040	ENSMUSG00000021175	Cdca7l	BC006933|JPO2	cell division cycle associated 7 like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-87911994-1	chr6	87911894	87912094	+	546.0	f1_balb.idr	intron (NM_017477, intron 23 of 23)	intron (NM_017477, intron 23 of 23)	-1982.0	NM_173737	232210.0	Mm.246241	NM_173737	ENSMUSG00000030060	Hmces	8430410A17Rik|C85376	5-hydroxymethylcytosine (hmC) binding, ES cell specific	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-43539893-3	chr7	43539811	43540011	+	671.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6740.0	NM_021293	12489.0	Mm.140157	NM_021293	ENSMUSG00000004609	Cd33	Siglec-3|gp67	CD33 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-95548588-1	chr13	95548488	95548688	+	609.0	f1_c57bl6.idr	Intergenic	Intergenic	-23348.0	NM_007974	14063.0	Mm.1614	NM_007974	ENSMUSG00000021678	F2rl1	Gpcr11|PAR-2|Par2	coagulation factor II (thrombin) receptor-like 1	protein-coding	1.3726805652674	2.88648561655988	2.26097238895369	1.6360819112211	2.28476823741858	1.2573142354774	2.2795869523751	2.09035653226699	-0.33664091445733	0.741881178164761	0.998431161219273
Merged-chr3-104963586-2	chr3	104963486	104963686	+	858.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-1877.0	NM_009520	22414.0	Mm.10740	NM_009520	ENSMUSG00000027840	Wnt2b	Wnt13	wingless-type MMTV integration site family, member 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-39968876-3	chr15	39968748	39968948	+	656.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6199.0	NR_045719	105976.0	Mm.394885	NR_045719		AU022793	-	expressed sequence AU022793	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-91060719-3	chr8	91060574	91060774	+	698.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-9383.0	NM_001282001	19651.0	Mm.235580	NM_011250	ENSMUSG00000031666	Rbl2	PRB2|RBR-2|Rb2|p130	RB transcriptional corepressor like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-29984237-2	chr7	29984137	29984337	+	1000.0	f0_balb.idr|f1_balb.idr	intron (NM_001033355, intron 1 of 9)	intron (NM_001033355, intron 1 of 9)	282.0	NM_001167872	243905.0	Mm.322432	NM_001033355	ENSMUSG00000074221	Zfp568	C80731|Gm1691|Znf568|chato	zinc finger protein 568	protein-coding	4.21747929842363	3.83666883608189	3.42339330400181	2.9680658889628	5.11922267057515	4.92256227888137	3.81640561441514	3.6156075571534	1.10956733035945	0.0347277644869251	0.263401654824763
Merged-chr2-157423556-2	chr2	157423456	157423656	+	710.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009271)	promoter-TSS (NM_009271)	-737.0	NM_009271	20779.0	Mm.22845	NM_009271	ENSMUSG00000027646	Src	AW259666|pp60c-src	Rous sarcoma oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85078030-3	chr12	85077938	85078138	+	797.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17577.0	NM_001361239	73422.0	Mm.311944	NM_175198	ENSMUSG00000042320	Prox2	1700058C01Rik	prospero homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-8841670-2	chr10	8841570	8841770	+	568.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 2 of 19)	RMER10B|LTR|ERVL	44400.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-35795508-2	chr5	35795444	35795644	+	657.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177678, intron 1 of 19)	intron (NM_177678, intron 1 of 19)	37664.0	NM_001177698	231148.0	Mm.254446	NM_177678	ENSMUSG00000029095	Ablim2	AI606905|C230091L11	actin-binding LIM protein 2	protein-coding	0.456679187850202	0.308178666670396	0.288424234316318	0.509242347616852	0.464580473645374	0.136113283670826	0.292784243451463	0.127455489905171	-1.04027604949181	0.573931430988418	1
Merged-chr5-88677189-2	chr5	88677089	88677289	+	584.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1018.0	NM_178700	231413.0	Mm.332474	NM_178700	ENSMUSG00000044221	Grsf1	BB232551|C80280|D5Wsu31e	G-rich RNA sequence binding factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-26610824-2	chr14	26610724	26610924	+	686.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285467, intron 11 of 19)	ID_B1|SINE|B4	-27310.0	NM_007479	11843.0	Mm.297768	NM_007479	ENSMUSG00000021877	Arf4	AA407803	ADP-ribosylation factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-95935851-2	chr5	95935751	95935951	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TATG)n|Simple_repeat|Simple_repeat	-21088.0	NM_018866	55985.0	Mm.10116	NM_018866	ENSMUSG00000023078	Cxcl13	4631412M08Rik|ANGIE2|Angie|BCA-1|BLC|BLR1L|Scyb13	chemokine (C-X-C motif) ligand 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5798251-2	chr19	5798151	5798351	+	765.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_002847, exon 1 of 1)	non-coding (NR_002847, exon 1 of 1)	-2270.0	NR_144621	109146451.0		NR_144621		Mascrna	-	Malat1-associated small cytoplasmic RNA	scRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97631551-2	chr11	97631449	97631649	+	792.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1833.0	NM_175332	103551.0	Mm.24506	NM_175332	ENSMUSG00000043439	Epop	AA409164|AI413509|AW539173|E13|E130012A19Rik|esPRC2p48	elongin BC and polycomb repressive complex 2 associated protein	protein-coding	2.04624882041762	2.14243781151233	0.985938160496028	0.968907381075126	1.98644770291478	1.93600737979068	0.990724864210081	1.54254368645552	0.0138321540681098	0.991440004738356	0.998431161219273
Merged-chr3-122372102-1	chr3	122372002	122372202	+	689.0	f1_c57bl6.idr	Intergenic	L1MC3|LINE|L1	-47655.0	NM_013867	29815.0	Mm.45815	NM_013867	ENSMUSG00000028121	Bcar3	AI131758|AND-34	breast cancer anti-estrogen resistance 3	protein-coding	2.23403162165996	1.2173576754417	2.5236897127453	2.80269958182534	2.16299068999715	1.9057858478495	1.19418638839477	1.61267626352303	-1.35119338805901	0.201016976504279	0.685430565772549
Merged-chr17-35175978-2	chr17	35175878	35176078	+	777.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361501)	promoter-TSS (NM_001361501)	74.0	NM_019467	11629.0	Mm.10747	NM_019467	ENSMUSG00000024397	Aif1	AI607846|AIF-1|D17H6S50E|G1|Iba1	allograft inflammatory factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-13337455-3	chr8	13337343	13337543	+	891.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1308.0	NM_001291765	21781.0	Mm.925	NM_009361	ENSMUSG00000038482	Tfdp1	Dp1|Drtf1	transcription factor Dp 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-39193461-1	chr16	39193361	39193561	+	737.0	f0_balb.idr	Intergenic	Intergenic	-4511.0	NR_153800	102640746.0		NR_153800		Gm36742	-	predicted gene, 36742	ncRNA	2.68738678694428	3.00972064542929	2.91063970873293	3.02538951578831	3.3269313627468	3.13890051713893	3.22248545305688	2.84457607041847	0.422678158034789	0.495341895362614	0.935903410809185
Merged-chr2-36105496-2	chr2	36105396	36105596	+	668.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001083125)	promoter-TSS (NM_001083125)	-88.0	NM_008500	16874.0	Mm.12881	NM_008500	ENSMUSG00000026890	Lhx6	Lhx6.1	LIM homeobox protein 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-27382107-2	chr14	27382007	27382207	+	912.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_027871, intron 4 of 10)	MER21B|LTR|ERVL	20718.0	NM_001289688	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-129895674-4	chr5	129895576	129895776	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183088)	promoter-TSS (NM_183088)	-47.0	NM_001359408	71970.0	Mm.422716	NM_183088	ENSMUSG00000034173	Zbed5	2410018M08Rik|Scand3	zinc finger, BED type containing 5	protein-coding	5.13631055823388	5.29033111330485	4.21455319957484	5.17015093102068	4.73935340646947	5.17464387307657	5.13377638034954	5.98601177145545	0.381024978923282	0.297089294864075	0.80018568054389
Merged-chr15-51734412-4	chr15	51734304	51734504	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	131057.0	NM_080635	68135.0	Mm.289800	NM_080635	ENSMUSG00000022312	Eif3h	1110008A16Rik|40kD|9430017H16Rik|EIF3-P40|EIF3-gamma|Eif3s3	eukaryotic translation initiation factor 3, subunit H	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-119277149-1	chr2	119277049	119277249	+	727.75	f0_balb.idr	Intergenic	Intergenic	-5923.0	NM_145530	228543.0	Mm.120274	NM_145530	ENSMUSG00000034226	Rhov	A030005A06Rik|Arhv	ras homolog family member V	protein-coding	1.64664045860206	2.453909306427	1.7803177996599	1.28290342511501	2.29851021943358	2.4725964415669	2.85251380313856	2.68700609513932	1.73569505502191	0.058177929045055	0.356495808315919
Merged-chr8-43367871-4	chr8	43367766	43367966	+	765.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60857.0	NM_009556	22702.0	Mm.285848	NM_009556	ENSMUSG00000051176	Zfp42	Rex-1|Rex1|Zfp-42	zinc finger protein 42	protein-coding	3.08766737208949	3.45091691729409	2.84621795981707	3.16705512400353	3.38561734555733	3.08697352513127	2.73869716486824	3.41425554636548	0.0636194706302047	0.915978766817744	0.998431161219273
Merged-chr4-66852234-4	chr4	66852132	66852332	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24681.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-170507925-4	chr2	170507826	170508026	+	942.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040367, intron 1 of 2)	intron (NR_040367, intron 1 of 2)	-3304.0	NM_001110152	109054.0	Mm.28808	NM_001013369	ENSMUSG00000052033	Pfdn4	0610025M10Rik|1810063B06Rik|C-1|C1|Pfd4	prefoldin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-126200987-2	chr4	126200887	126201087	+	746.333313	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356456)	promoter-TSS (NM_001356456)	20.0	NM_001356456	230753.0	Mm.29813	NM_146153	ENSMUSG00000043962	Thrap3	9330151F09Rik|B230333E16Rik|Trap150	thyroid hormone receptor associated protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64239941-2	chr5	64239869	64240069	+	925.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 1 of 18)	intron (NM_001289514, intron 1 of 18)	9612.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	1.08435199668238	1.74565091010954	1.67540970430373	0.777277049757027	1.22441463453595	1.52898662827257	1.00791749590327	0.779259555813162	-0.838761408183632	0.539858377086634	0.954403851908463
Merged-chr2-165933985-3	chr2	165933898	165934098	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49160.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	0.21192869450214	0.235680885872246	0.227962968500932	0.221967042497387	0.997180170234573	0.237412594424109	0.960616889023757	0.805302861464794	4.37701281570018	0.0273271182415857	1
Merged-chr4-102607031-1	chr4	102606931	102607131	+	586.0	f0_balb.idr	3' UTR (NM_001177980, exon 10 of 10)	3' UTR (NM_001177980, exon 10 of 10)	17188.0	NM_001177981	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-125608023-4	chr7	125607952	125608152	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021887, intron 1 of 8)	intron (NM_021887, intron 1 of 8)	4623.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	5.51992876893298	5.7785772012848	4.71169856848945	4.81027993848945	5.12463103478702	5.49828805468713	5.70414470650723	5.78365393953833	0.308811159535655	0.338126180757405	0.838444334818865
Merged-chr1-87555216-4	chr1	87555090	87555290	+	993.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111314, intron 1 of 14)	MTE2a|LTR|ERVL-MaLR	18680.0	NM_001111314	53972.0	Mm.435439	NM_019867	ENSMUSG00000026259	Ngef	Tims2|ephexin	neuronal guanine nucleotide exchange factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-17836937-4	chr13	17836850	17837050	+	913.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31853.0	NM_027118	69562.0	Mm.193924	NM_027118	ENSMUSG00000041297	Cdk13	2310015O17Rik|Cdc2l5	cyclin-dependent kinase 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-97630257-4	chr1	97630161	97630361	+	852.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31415.0	NM_001355074	52392.0	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-136088024-4	chr5	136087931	136088131	+	989.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039103, intron 1 of 19)	intron (NM_001039103, intron 1 of 19)	4115.0	NM_001039103	54153.0	Mm.290655	NM_133914	ENSMUSG00000004952	Rasa4	AA793972|AW112107|BB079060|CAPRI|GAPL	RAS p21 protein activator 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-8922305-2	chr3	8922205	8922405	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025434, intron 1 of 2)	Lx6|LINE|L1	1552.0	NM_025434	66230.0	Mm.38460	NM_025434	ENSMUSG00000040269	Mrps28	1500012D08Rik|AW061224	mitochondrial ribosomal protein S28	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-56934648-4	chr18	56934555	56934755	+	930.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1605.0	NR_033455	100038410.0	Mm.353669	NR_033455		Gm10536	-	predicted gene 10536	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-38457370-4	chr16	38457268	38457468	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1565.0	NM_001359898	12519.0	Mm.89474	NM_009855	ENSMUSG00000075122	Cd80	B71|Cd28l|Ly-53|Ly53|MIC17|TSA1	CD80 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115181671-2	chr11	115181596	115181796	+	942.166626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_012030)	TTS (NM_012030)	5620.0	NM_025400	66176.0	Mm.86823	NM_025400	ENSMUSG00000015542	Nat9	1110028N05Rik	N-acetyltransferase 9 (GCN5-related, putative)	protein-coding	0.546307933998501	1.28966377857072	1.34607136683242	0.562092215407758	0.548679680294864	1.30245932569857	1.36031532535003	0.563732115545053	0.0402433056300333	0.980933538629456	0.998431161219273
Merged-chr8-12672148-4	chr8	12672036	12672236	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198031)	promoter-TSS (NM_198031)	-36.0	NM_198031	259279.0	Mm.142095	NM_198031	ENSMUSG00000000759	Tubgcp3	GCP3|Spc98p	tubulin, gamma complex associated protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-45317465-1	chr9	45317365	45317565	+	653.0	f1_c57bl6.idr	TTS (NR_040720)	TTS (NR_040720)	-1635.0	NM_001013373	214531.0	Mm.394987	NM_001013373	ENSMUSG00000037129	Tmprss13	BC010843|Tpmrss13	transmembrane protease, serine 13	protein-coding	0.462457642438677	0.883571335993207	1.10880252183381	0.475275995147709	0.630254968670154	0.494879817065539	1.42202879392736	0.954688100255706	0.807618868264564	0.625839653739136	1
Merged-chr11-99169039-2	chr11	99168939	99169139	+	688.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13962.0	NM_007719	12775.0	Mm.2932	NM_007719	ENSMUSG00000037944	Ccr7	CC-CKR-7|CCR-7|CD197|Cdw197|Cmkbr7|EBI1|Ebi1h	chemokine (C-C motif) receptor 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-84536045-3	chr18	84535940	84536140	+	759.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033341, intron 3 of 8)	intron (NM_001033341, intron 3 of 8)	53464.0	NM_001033341	240476.0	Mm.329575	NM_001033341	ENSMUSG00000048410	Zfp407	6430585N13Rik|Gm333|Gm334|Gm948|ZNF407	zinc finger protein 407	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-9132294-2	chr4	9132194	9132394	+	833.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-136999.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-99200208-4	chr4	99200117	99200317	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175029, intron 1 of 10)	intron (NM_175029, intron 1 of 10)	6070.0	NM_001145967	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	5.81887546761014	6.21914012920113	5.61298191053676	5.69575701874383	5.27645224716052	6.09405972395775	5.07291260073354	4.40618795817544	-0.58605476463871	0.079350054942883	0.428644619843852
Merged-chr17-24779682-3	chr17	24779589	24779789	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-24693.0	NM_029197	75178.0	Mm.52592	NM_029197	ENSMUSG00000024155	Meiob	4930528F23Rik|MLZ-675	meiosis specific with OB domains	protein-coding	1.68590327048274	3.15718786326648	2.89703944219743	1.53069259876748	5.18341718413641	4.04197396867853	4.88127920103912	4.50031450156713	3.28423996036082	8.236948077089e-08	7.64125538883355e-06
Merged-chr7-83654542-2	chr7	83654449	83654649	+	937.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360088, intron 13 of 18)	L2c|LINE|L2	946.0	NM_001360089	16170.0	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	-0.595037262513446	-0.080186092702184	-0.587252263421021	-0.590178633130825	-0.594314464321657	-0.582604970052336	0.00382103245022775	-0.58966738236934	0.304225317690954	0.914656096863809	1
Merged-chr7-134690028-1	chr7	134689928	134690128	+	831.0	f1_balb.idr	intron (NM_001033420, intron 1 of 51)	MER44A|DNA|TcMar-Tigger	19341.0	NM_001033420	330662.0	Mm.436572	NM_001033420	ENSMUSG00000058325	Dock1	9130006G06Rik|AI854900|D630004B07Rik|b2b3190Clo	dedicator of cytokinesis 1	protein-coding	0.408142869817385	0.0207002119208071	0.0141052792247129	0.00898733673652141	0.16210299923632	0.235507605074693	0.0155635193952886	1.02219791954358	2.09217639539239	0.313625227902882	1
Merged-chr4-120925042-4	chr4	120924947	120925147	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001160043)	promoter-TSS (NM_001160043)	-42.0	NM_001160043	73172.0	Mm.151436	NM_028457	ENSMUSG00000028629	Exo5	3110037I16Rik|AV297100|Dem1|Exo V|mExo5	exonuclease 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-103028430-4	chr11	103028320	103028520	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008707)	promoter-TSS (NM_008707)	-123.0	NM_008707	18107.0	Mm.10265	NM_008707	ENSMUSG00000020936	Nmt1	AW536594	N-myristoyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-21733737-5	chr17	21733649	21733849	+	859.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164676)	promoter-TSS (NM_001164676)	25.0	NM_001164676	381067.0	Mm.482723	NM_001164676	ENSMUSG00000061544	Zfp229	-	zinc finger protein 229	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-21326692-3	chr5	21326596	21326796	+	900.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029195, intron 4 of 18)	intron (NM_029195, intron 4 of 18)	-45977.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-94491526-2	chr11	94491426	94491626	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361558, intron 8 of 8)	intron (NM_001361558, intron 8 of 8)	-6216.0	NM_144827	217116.0	Mm.156123	NM_144827	ENSMUSG00000020867	Spata20	Tisp78	spermatogenesis associated 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139075333-3	chr5	139075226	139075426	+	614.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359099, intron 4 of 10)	intron (NM_001359099, intron 4 of 10)	54426.0	NM_008923	19085.0	Mm.306163	NM_008923	ENSMUSG00000025855	Prkar1b	AI385716|RIbeta	protein kinase, cAMP dependent regulatory, type I beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-143624777-4	chr7	143624692	143624892	+	906.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175649, intron 1 of 7)	intron (NM_175649, intron 1 of 7)	3053.0	NM_175649	244237.0	Mm.247498	NM_175649	ENSMUSG00000045362	Tnfrsf26	Tnfrh3|Tnfrsf24	tumor necrosis factor receptor superfamily, member 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-103333078-4	chr12	103332980	103333180	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023049, intron 6 of 9)	MIR3|SINE|MIR	18121.0	NM_001195726	100504156.0	Mm.425749	NM_001195726	ENSMUSG00000096753	Fam181a	EG544888	family with sequence similarity 181, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69669407-2	chr11	69669307	69669507	+	683.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159375, intron 4 of 10)	intron (NM_001159375, intron 4 of 10)	3016.0	NM_144958	13681.0	Mm.26680	NM_144958	ENSMUSG00000059796	Eif4a1	BM-010|Ddx2a|Eif4	eukaryotic translation initiation factor 4A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-38875457-8	chr6	38875361	38875561	+	923.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010433, intron 1 of 14)	intron (NM_010433, intron 1 of 14)	729.0	NM_010433	15258.0	Mm.23790	NM_010433	ENSMUSG00000061436	Hipk2	1110014O20Rik|B230339E18Rik|Stank	homeodomain interacting protein kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-50378668-4	chr6	50378563	50378763	+	999.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163645, intron 2 of 21)	intron (NM_001163645, intron 2 of 21)	4174.0	NM_027881	71720.0	Mm.44153	NM_027881	ENSMUSG00000029822	Osbpl3	1200014M06Rik|6720421I08Rik|A530055M08|ORP-3|ORP3|OSBP3	oxysterol binding protein-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-10873622-1	chr4	10873522	10873722	+	980.0	f1_balb.idr	promoter-TSS (NM_026005)	promoter-TSS (NM_026005)	-876.0	NM_026005	67157.0	Mm.440552	NM_026005	ENSMUSG00000059482	2610301B20Rik	AI428449	RIKEN cDNA 2610301B20 gene	protein-coding	1.70655327344126	0.999085505943569	1.22238710609556	1.38238474005043	2.53048040953178	1.00423736938351	1.60696509694375	2.28966042870185	1.87009334784762	0.117539843539378	0.537850130734349
Merged-chr11-75629486-2	chr11	75629386	75629586	+	950.75	f1_balb.idr|f1_c57bl6.idr	TTS (NM_008850)	TTS (NM_008850)	-1534.0	NM_008916	19062.0	Mm.1458	NM_008916	ENSMUSG00000006127	Inpp5k	C62|Pps|SKIP	inositol polyphosphate 5-phosphatase K	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-156032533-1	chr4	156032433	156032633	+	619.0	f1_c57bl6.idr	Intergenic	Intergenic	6211.0	NM_021985	21936.0	Mm.3180	NM_009400	ENSMUSG00000041954	Tnfrsf18	AITR|Gitr	tumor necrosis factor receptor superfamily, member 18	protein-coding	1.20465762702569	0.345935559602633	0.980862899914787	1.22783893581194	0.31844079436006	0.34805734630536	0.338551639418055	0.33034217314002	-4.53760035372728	0.0160421706128253	1
Merged-chr7-29247744-1	chr7	29247644	29247844	+	541.0	f1_balb.idr	TTS (NM_001110201)	TTS (NM_001110201)	723.0	NM_028179	72275.0	Mm.441142	NM_028179	ENSMUSG00000030587	2200002D01Rik	2010005J02Rik|H2RSP|IMUP|IMUP-1|IMUP-2	RIKEN cDNA 2200002D01 gene	protein-coding	0.586897489779538	0.461994794765912	1.1450993769334	0.76352795766624	0.591685277712504	0.463829467817569	1.1581301648598	0.768504965942924	0.0380121846775431	0.981139905358963	1
Merged-chr6-103525844-4	chr6	103525746	103525946	+	825.224976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007697, intron 1 of 26)	intron (NM_007697, intron 1 of 26)	14970.0	NM_007697	12661.0	Mm.251288	NM_007697	ENSMUSG00000030077	Chl1	A530023M13Rik|AI465420|CALL|LICAM2	cell adhesion molecule L1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34906091-2	chr17	34905991	34906191	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286575, intron 11 of 27)	intron (NM_001286575, intron 11 of 27)	7117.0	NM_145830	110147.0	Mm.35345	NM_145830	ENSMUSG00000013787	Ehmt2	Bat8|D17Ertd710e|G9a|KMT1C|NG36	euchromatic histone lysine N-methyltransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99071467-4	chr7	99071386	99071586	+	690.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 5 of 14)	L1_Mus4|LINE|L1	69658.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	-0.698484661494946	-0.688499773967716	-0.516084014927536	-0.0710371553076454	-0.697863552217247	-0.687759554153754	-0.511715376596111	-0.693862993936126	-2.24574476655831	0.408865379475194	1
Merged-chr11-3408226-2	chr11	3408126	3408326	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010718, intron 1 of 15)	intron (NM_010718, intron 1 of 15)	1012.0	NM_010718	16886.0	Mm.124176	NM_010718	ENSMUSG00000020451	Limk2	Limk-2|whe	LIM motif-containing protein kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-58691611-2	chr15	58691511	58691711	+	942.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	131816.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-38573512-3	chr18	38573375	38573575	+	784.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27793.0	NM_011898	24066.0	Mm.42038	NM_011898	ENSMUSG00000024427	Spry4	A030006O18Rik|sprouty4	sprouty RTK signaling antagonist 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-5367122-4	chr5	5366967	5367167	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011074, intron 2 of 14)	intron (NM_011074, intron 2 of 14)	13184.0	NM_011074	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	5.11819968362935	5.23055715031192	5.49789806819104	5.1649315950544	3.86491843753074	3.54972644783049	2.67307917282073	4.19103676907636	-1.97299278136174	1.2790624372867e-06	7.96515110167775e-05
Merged-chr17-48118802-4	chr17	48118722	48118922	+	815.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27485.0	NM_001177897	328829.0	Mm.466999	NM_177824	ENSMUSG00000073386	9830107B12Rik	Trem5	RIKEN cDNA 9830107B12 gene	protein-coding	1.88094275261622	2.11133722443954	1.26935876644182	1.83910610322957	2.46809049240753	2.12710847770446	1.90580340736396	2.86613428051859	1.48480431253538	0.11774973393349	0.538536711969764
Merged-chr8-126683732-3	chr8	126683631	126683831	+	875.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-90295.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-95860155-2	chr11	95860055	95860255	+	886.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045187, exon 2 of 2)	non-coding (NR_045187, exon 2 of 2)	1338.0	NR_045187	73906.0	Mm.399894	NR_045187	ENSMUSG00000086015	4833417C18Rik	-	RIKEN cDNA 4833417C18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-6384196-3	chr15	6384087	6384287	+	971.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001008702, intron 1 of 13)	intron (NM_001008702, intron 1 of 13)	-2561.0	NM_023118	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-47347230-4	chr4	47347122	47347322	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6000.0	NM_001312868	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-11136495-2	chr16	11136395	11136595	+	702.333374	f1_balb.idr|f1_c57bl6.idr	TTS (NM_145931)	TTS (NM_145931)	-1963.0	NM_029582	106200.0	Mm.291015	NM_029582	ENSMUSG00000022498	Txndc11	2810408E11Rik|AI427833|EFP1|Txdc11	thioredoxin domain containing 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-123342033-2	chr4	123341933	123342133	+	766.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007558, intron 1 of 6)	intron (NM_007558, intron 1 of 6)	1219.0	NM_001256019	12163.0	Mm.439749	NM_007558	ENSMUSG00000032726	Bmp8a	Bmp7r1|OP-2|OP2	bone morphogenetic protein 8a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-67840361-4	chr9	67840276	67840476	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177184)	promoter-TSS (NM_177184)	-20.0	NM_177184	320528.0	Mm.241454	NM_177184	ENSMUSG00000035284	Vps13c	AI552542|AV026040|C230055H22Rik|W51662|chorein	vacuolar protein sorting 13C	protein-coding	5.03829529162274	4.33683927704079	4.65350174414505	4.80205932138997	4.35522407609848	3.53628489875668	3.61863524985874	3.67884031321234	-1.14996412028824	0.00653324178225496	0.0811676627385486
Merged-chr1-153910072-3	chr1	153909931	153910131	+	811.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008131)	TTS (NM_008131)	10102.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30471219-2	chr2	30471119	30471319	+	707.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	2980.0	NM_030244	72500.0	Mm.295464	NM_030244	ENSMUSG00000089762	Ier5l	2610524G09Rik	immediate early response 5-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-190944501-4	chr1	190944379	190944579	+	854.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357133, intron 8 of 8)	intron (NM_001357133, intron 8 of 8)	15657.0	NM_001357133	52477.0	Mm.289914	NM_021421	ENSMUSG00000026634	Angel2	2610307I21Rik|5730410O10Rik|AI845692|D1Ertd396e|D1Ertd654e	angel homolog 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167624515-2	chr2	167624415	167624615	+	839.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_023230, intron 1 of 3)	intron (NM_023230, intron 1 of 3)	7490.0	NM_001311146	66589.0	Mm.278783	NM_023230	ENSMUSG00000078923	Ube2v1	0610011J09Rik|AI256840|CROC-1|CROC1|D7Bwg1382e|UEV-1	ubiquitin-conjugating enzyme E2 variant 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-62250708-4	chr18	62250602	62250802	+	883.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	70602.0	NM_001013754	225609.0	Mm.296917	NM_001013754	ENSMUSG00000054589	Gm9949	EG225609	predicted gene 9949	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-29397110-4	chr17	29397051	29397251	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36237.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-107873345-3	chr13	107873256	107873456	+	758.011108	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 2 of 14)	intron (NM_145456, intron 2 of 14)	16708.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-105662874-3	chr5	105662833	105663033	+	843.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB5|LINE|L1	-37036.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	2.22716727561872	3.28563350027209	1.48676485363519	1.42379794387786	3.66685975080442	4.78350827675033	4.70971161039489	3.44761139705975	2.9952132566016	0.01049212075093	0.112686274772465
Merged-chr19-41317438-1	chr19	41317338	41317538	+	545.0	f1_balb.idr	intron (NM_031376, intron 8 of 16)	intron (NM_031376, intron 8 of 16)	-53434.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	1.24366095055785	1.66533514501231	0.822496126143464	1.73746727218861	1.56507865096507	0.840147628004976	0.825703345372418	1.44660580426354	-0.729301047497503	0.604507619474815	0.973889860145757
Merged-chr4-53414182-4	chr4	53414078	53414278	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26235.0	NM_001159633	100434.0	Mm.482207	NM_133891	ENSMUSG00000028412	Slc44a1	2210409B22Rik|4833416H08Rik|AW547365|CHTL1|CTL1|Cdw92	solute carrier family 44, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-14336036-1	chr2	14335936	14336136	+	897.3333130000001	f0_balb.idr	Intergenic	Intergenic	-52362.0	NM_001012305	277468.0	Mm.44662	NM_001012305	ENSMUSG00000036949	Slc39a12	AW046938|Gm731	solute carrier family 39 (zinc transporter), member 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-161252019-4	chr1	161251922	161252122	+	993.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007453)	promoter-TSS (NM_007453)	-812.0	NM_001303408	11758.0	Mm.186185	NM_007453	ENSMUSG00000026701	Prdx6	1-Cys Prx|1-cysPrx|9430088D19Rik|AA690119|Aop2|Brp-12|CP-3|GPx|Ltw-4|Ltw4|Lvtw-4|NSGPx|ORF06|Prdx5|aiPLA2	peroxiredoxin 6	protein-coding	4.65146255336003	4.5963828260711	4.64372812105811	4.11318818542896	5.22258292613215	4.33740996318694	3.64946220496603	3.93823329723419	-0.095013106004815	0.832024703936193	0.998431161219273
Merged-chr17-32115409-2	chr17	32115309	32115509	+	587.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23986.0	NR_027316	435518.0	Mm.328944	NR_027316	ENSMUSG00000002791	Pdxk-ps	Gm9743	pyridoxal (pyridoxine, vitamin B6) kinase, pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-106369546-4	chr1	106369443	106369643	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133821, intron 12 of 16)	MTEb|LTR|ERVL-MaLR	177088.0	NR_106164	102466254.0		NR_106164	ENSMUSG00000098344	Mir3473f	Gm27846|mmu-mir-3473f	microRNA 3473f	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-104469723-2	chr14	104469623	104469823	+	989.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1724.0	NM_011143	18996.0	Mm.246550	NM_011143	ENSMUSG00000048349	Pou4f1	Brn-3|Brn-3.0|Brn3|Brn3.0|Brn3a|E130119J07Rik	POU domain, class 4, transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-110709931-4	chr9	110709810	110710010	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_028312, exon 4 of 7)	exon (NM_028312, exon 4 of 7)	32700.0	NM_001083936	19228.0	Mm.3542	NM_011199	ENSMUSG00000032492	Pth1r	PPR|Pthr|Pthr1	parathyroid hormone 1 receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81049822-2	chr15	81049722	81049922	+	952.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001082536, intron 2 of 13)	B3|SINE|B2	55225.0	NM_153049	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85177311-4	chr12	85177164	85177364	+	972.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008827)	promoter-TSS (NM_008827)	49.0	NM_008827	18654.0	Mm.4809	NM_008827	ENSMUSG00000004791	Pgf	AI854365|PIGF|Plgf	placental growth factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-120257481-1	chr10	120257381	120257581	+	571.0	f1_c57bl6.idr	Intergenic	Intergenic	30421.0	NM_025431	66225.0	Mm.291755	NM_025431	ENSMUSG00000020224	Llph	1190005P17Rik	LLP homolog, long-term synaptic facilitation (Aplysia)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-34181381-3	chr18	34181254	34181454	+	901.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39630.0	NM_007462	11789.0	Mm.384171	NM_007462	ENSMUSG00000005871	Apc	AI047805|AU020952|AW124434|CC1|Min|mAPC	adenomatosis polyposis coli	protein-coding	2.58301682123437	1.42347721891915	1.85003373076945	2.62679817452925	0.818054225547113	1.20007238085106	0.879311724122964	0.85490142984478	-4.85960048575745	0.000432990810862961	0.00996487931342802
Merged-chr12-102284764-3	chr12	102284651	102284851	+	864.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161365, intron 1 of 9)	intron (NM_001161365, intron 1 of 9)	1110.0	NM_001161365	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-23397788-1	chr1	23397688	23397888	+	578.0	f0_balb.idr	Intergenic	Intergenic	-14613.0	NM_001081079	70155.0	Mm.28013	NM_001081079	ENSMUSG00000026158	Ogfrl1	2210417C17Rik	opioid growth factor receptor-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-113914451-4	chr13	113914360	113914560	+	820.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172595, intron 1 of 4)	intron (NM_172595, intron 1 of 4)	119952.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-17661416-2	chr10	17661316	17661516	+	664.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61812.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-148379683-3	chr5	148379580	148379780	+	940.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007513, intron 1 of 12)	intron (NM_007513, intron 1 of 12)	13135.0	NM_001301424	11987.0	Mm.275489	NM_007513	ENSMUSG00000041313	Slc7a1	4831426K01Rik|AI447493|Atrc-1|Atrc1|Cat1|Rec-1|Rev-1|mCAT-1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 1	protein-coding	2.09317383967363	2.58441135953556	1.20969984113539	2.21401081080866	2.11178435244375	3.01472250027605	1.21710456709184	1.82286223708912	0.237002386046221	0.821782526958734	0.998431161219273
Merged-chr13-37346034-4	chr13	37345918	37346118	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010745, intron 1 of 4)	intron (NM_010745, intron 1 of 4)	673.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-87442763-3	chr12	87442664	87442864	+	734.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001013372)	TTS (NM_001013372)	1075.0	NM_001102565	211064.0	Mm.486235	NM_001102565	ENSMUSG00000079036	Alkbh1	2700073G19Rik|Abh|Alkbh|alkB|hABH	alkB homolog 1, histone H2A dioxygenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-12731563-4	chr18	12731481	12731681	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028341, intron 10 of 13)	intron (NM_028341, intron 10 of 13)	-9774.0	NM_181731	71132.0	Mm.179740	NM_027687	ENSMUSG00000024430	Cabyr	1700016C01Rik|4933421A18Rik|CBP86|FSP-2	calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122556808-4	chr8	122556729	122556929	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5500.0	NM_001357349	234839.0	Mm.37324	NM_001037298	ENSMUSG00000014444	Piezo1	9630020g22|Fam38a|mKIAA0233	piezo-type mechanosensitive ion channel component 1	protein-coding	5.63824813156602	4.53938212614969	4.61077235040151	5.48093585653648	3.74544425123195	4.94292436634753	5.87026325106654	5.1130503861944	-0.0674984634503029	0.875836474706556	0.998431161219273
Merged-chr6-83053802-4	chr6	83053678	83053878	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007517)	promoter-TSS (NM_007517)	-743.0	NM_007517	11993.0	Mm.386752	NM_007517	ENSMUSG00000068328	Aup1	AA589454	ancient ubiquitous protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-31135823-3	chr8	31135712	31135912	+	755.111145	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14504.0	NM_144927	234138.0	Mm.349800	NM_144927	ENSMUSG00000031577	Tti2	-	TELO2 interacting protein 2	protein-coding	2.02094264027528	1.97719663951323	2.01496905648309	1.60931229970435	1.54355631973679	1.8662184278013	1.32513835784488	1.08365639509563	-1.3784933449148	0.209468539868929	0.69901822956075
Merged-chr3-144569314-2	chr3	144569214	144569414	+	790.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355234, intron 1 of 6)	intron (NM_001355234, intron 1 of 6)	902.0	NM_011828	23908.0	Mm.12863	NM_011828	ENSMUSG00000040151	Hs2st1	2OST|AW214369|Hs2st|mKIAA0448	heparan sulfate 2-O-sulfotransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-73554347-4	chr12	73554224	73554424	+	952.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5841.0	NR_044985	73644.0	Mm.369885	NR_044985	ENSMUSG00000113800	2210039B01Rik	-	RIKEN cDNA 2210039B01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-69778218-4	chr2	69778127	69778327	+	808.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077684, intron 4 of 8)	intron (NM_001077684, intron 4 of 8)	11259.0	NM_001077684	75051.0	Mm.195726	NM_001077684	ENSMUSG00000070883	Ccdc173	4930525K21Rik|4930578N16Rik	coiled-coil domain containing 173	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-62188939-4	chr18	62188812	62189012	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8812.0	NM_001013754	225609.0	Mm.296917	NM_001013754	ENSMUSG00000054589	Gm9949	EG225609	predicted gene 9949	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-107466138-4	chr11	107466031	107466231	+	983.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 1 of 9)	B4|SINE|B4	4589.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-101656261-4	chr4	101656168	101656368	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175036, exon 3 of 4)	exon (NM_175036, exon 3 of 4)	8485.0	NM_175036	230514.0	Mm.4756	NM_175036	ENSMUSG00000035212	Leprot	LEPR|OB-RGRP|Obrgrp|VPS55	leptin receptor overlapping transcript	protein-coding	6.48843642196708	6.36723276411837	6.37104474068386	6.35582380059712	6.24270771516071	6.78942041199341	6.47318378678006	6.25652545974578	0.0561919148049315	0.78567252812815	0.998431161219273
Merged-chr11-119490786-2	chr11	119490686	119490886	+	722.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177394)	promoter-TSS (NM_177394)	449.0	NR_153849	78439.0	Mm.440446	NR_153849	ENSMUSG00000109408	A930037H05Rik	Gm44935	RIKEN cDNA A930037H05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3308624-4	chr12	3308511	3308711	+	633.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016676, intron 1 of 5)	intron (NM_016676, intron 1 of 5)	1358.0	NM_016676	19325.0	Mm.378993	NM_016676	ENSMUSG00000020671	Rab10	AW107754	RAB10, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-110372700-4	chr7	110372619	110372819	+	990.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177324, intron 19 of 40)	intron (NM_177324, intron 19 of 40)	151016.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-26440883-2	chr2	26440783	26440983	+	626.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_153125, exon 2 of 30)	exon (NM_153125, exon 2 of 30)	4333.0	NM_153125	227648.0	Mm.206371	NM_153125	ENSMUSG00000026924	Sec16a	AU024582|C230052J16Rik	SEC16 homolog A, endoplasmic reticulum export factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-10441364-2	chr8	10441264	10441464	+	683.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001319151, intron 19 of 34)	intron (NM_001319151, intron 19 of 34)	287453.0	NM_001319151	244281.0	Mm.422761	NM_001081397	ENSMUSG00000039057	Myo16	BM140241|C230040D10Rik|Gm1105|NYAP3|mKIAA0865	myosin XVI	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-66341012-3	chr8	66340921	66341121	+	993.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175188, intron 4 of 7)	intron (NM_175188, intron 4 of 7)	-45280.0	NM_001166375	72925.0	Mm.380457	NM_175188	ENSMUSG00000036469	March1	2900024D24Rik|BB085186	membrane-associated ring finger (C3HC4) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-125734222-4	chr8	125734120	125734320	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310688)	promoter-TSS (NM_001310688)	17.0	NM_001310688	66566.0	Mm.25296	NM_025636	ENSMUSG00000031851	Ntpcr	2310079N02Rik|AI449709	nucleoside-triphosphatase, cancer-related	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-88481346-3	chr9	88481209	88481409	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001284328, intron 1 of 11)	CpG	1088.0	NM_001311113	56403.0	Mm.260545	NM_019666	ENSMUSG00000032423	Syncrip	2610109K23Rik|4632417O19Rik|GRY-RBP|Nsap1|Nsap1l|hnRNP Q|pp68	synaptotagmin binding, cytoplasmic RNA interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-28678125-6	chr19	28678044	28678244	+	914.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045330)	promoter-TSS (NR_045330)	-80.0	NR_045330	320176.0	Mm.406716	NR_045330	ENSMUSG00000097735	D930032P07Rik	-	RIKEN cDNA D930032P07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-66235340-4	chr17	66235245	66235445	+	938.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	111825.0	NM_001348292	320209.0	Mm.259605	NM_001003919	ENSMUSG00000035842	Ddx11	4732462I11Rik|CHL1|CHLR1|KRG2|essa15a	DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-173022413-4	chr2	173022328	173022528	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019547, intron 1 of 3)	CpG	526.0	NM_019547	56190.0	Mm.485782	NM_019547	ENSMUSG00000027510	Rbm38	Rnpc1|Seb4|Seb4l	RNA binding motif protein 38	protein-coding	2.72408058855687	1.53460463339783	3.35867706144827	3.04801775375147	2.74764933605704	1.54561948183528	3.45018144506341	3.06387001129374	0.0827191431106533	0.923789908098475	0.998431161219273
Merged-chr3-96497570-2	chr3	96497470	96497670	+	958.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27615.0	NM_027126	69585.0	Mm.171314	NM_027126	ENSMUSG00000038403	Hfe2	2310035L15Rik|5230400G09Rik|AI414844|AI789733|DL-M|HJV|Rgmc|hemojuvelin	hemochromatosis type 2 (juvenile)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88610769-3	chr3	88610675	88610875	+	732.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5432.0	NM_001198911	16800.0	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-24703720-3	chr6	24703629	24703829	+	716.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29516.0	NM_028920	74409.0	Mm.87331	NM_028920	ENSMUSG00000029679	Hyal6	4932701A20Rik|Hyal-ps1|Hyalp1	hyaluronoglucosaminidase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69980695-4	chr11	69980604	69980804	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026017)	promoter-TSS (NM_026017)	-374.0	NM_001253700	54351.0	Mm.13430	NM_018740	ENSMUSG00000018565	Elp5	Derp6|Rai12	elongator acetyltransferase complex subunit 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-77251859-3	chr10	77251777	77251977	+	666.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7346.0	NR_026944	100169878.0	Mm.420901	NR_026944	ENSMUSG00000078444	Gm10941	-	predicted gene 10941	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-9306403-2	chr15	9306303	9306503	+	571.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_207216, exon 4 of 7)	exon (NM_207216, exon 4 of 7)	26574.0	NM_207216	105887.0	Mm.482274	NM_207216	ENSMUSG00000072664	Ugt3a1	AI746432	UDP glycosyltransferases 3 family, polypeptide A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-6469097-3	chr4	6468996	6469196	+	839.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14825.0	NM_010945	18201.0	Mm.3059	NM_010945	ENSMUSG00000028245	Nsmaf	AA959567|C630007J05|Fan	neutral sphingomyelinase (N-SMase) activation associated factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-58215449-4	chr15	58215358	58215558	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026346)	promoter-TSS (NM_026346)	-566.0	NM_026346	67731.0	Mm.25683	NM_026346	ENSMUSG00000022358	Fbxo32	4833442G10Rik|AI430017|ATROGIN1|Gm20361|MAFbx	F-box protein 32	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-83973554-1	chr8	83973454	83973654	+	1000.0	f1_c57bl6.idr	intron (NM_008854, intron 1 of 9)	intron (NM_008854, intron 1 of 9)	576.0	NM_008854	18747.0	Mm.19111	NM_008854	ENSMUSG00000005469	Prkaca	PKCD|Pkaca	protein kinase, cAMP dependent, catalytic, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-80560012-2	chr17	80559912	80560112	+	758.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360144, intron 2 of 9)	intron (NM_001360144, intron 2 of 9)	3822.0	NM_001033443	381113.0	Mm.329216	NM_001033443	ENSMUSG00000033966	Cdkl4	AU067824|Gm942	cyclin-dependent kinase-like 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-123611195-7	chr4	123611110	123611310	+	945.642883	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199137, intron 1 of 92)	B1_Mus2|SINE|Alu	-5210.0	NR_105824	102465214.0		NR_105824	ENSMUSG00000099005	Mir6398	Gm27657|mmu-mir-6398	microRNA 6398	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-20998511-4	chr9	20998364	20998564	+	956.2291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-4273.0	NM_023167	66163.0	Mm.427576	NM_023167	ENSMUSG00000003299	Mrpl4	1110017G11Rik	mitochondrial ribosomal protein L4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-29468806-2	chr6	29468706	29468906	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025381, intron 1 of 1)	intron (NM_025381, intron 1 of 1)	1023.0	NM_025381	66144.0	Mm.371614	NM_025381	ENSMUSG00000004285	Atp6v1f	1110004G16Rik	ATPase, H+ transporting, lysosomal V1 subunit F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24781066-3	chr17	24780949	24781149	+	931.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23333.0	NM_029197	75178.0	Mm.52592	NM_029197	ENSMUSG00000024155	Meiob	4930528F23Rik|MLZ-675	meiosis specific with OB domains	protein-coding	2.74869962096855	3.25320066924465	3.5461749706293	3.44406906755396	3.65351019712252	4.14657852379676	4.24243974102299	4.65452685439468	1.36116255244722	0.00754897365918667	0.0892633895823801
Merged-chr12-82276032-4	chr12	82275931	82276131	+	933.008301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167983, intron 3 of 23)	intron (NM_001167983, intron 3 of 23)	-35318.0	NM_172579	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128749754-2	chr2	128749654	128749854	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 4 of 18)	B1_Mur3|SINE|Alu	50839.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-128399704-4	chr7	128399602	128399802	+	818.81665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026418, intron 3 of 4)	MTC|LTR|ERVL-MaLR	18470.0	NM_026418	67865.0	Mm.18635	NM_026418	ENSMUSG00000030844	Rgs10	2310010N19Rik	regulator of G-protein signalling 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-117380926-2	chr7	117380826	117381026	+	626.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175645)	promoter-TSS (NM_175645)	-53.0	NM_175645	233781.0	Mm.461427	NM_175645	ENSMUSG00000030657	Xylt1	8030490L12	xylosyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99113813-3	chr15	99113687	99113887	+	740.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13058.0	NM_139140	72572.0	Mm.276650	NM_139140	ENSMUSG00000051934	Spats2	2700012F11Rik|59kDa|Scr59|p59	spermatogenesis associated, serine-rich 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64297745-2	chr5	64297645	64297845	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 11 of 18)	intron (NM_001289514, intron 11 of 18)	67388.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-86800932-2	chr5	86800832	86801032	+	791.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	-3334.0	NM_001347375	231386.0	Mm.196325	NM_177680	ENSMUSG00000035851	Ythdc1	A730098D12Rik|C80342|mKIAA1966	YTH domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-121031945-1	chr10	121031845	121032045	+	557.0	f0_balb.idr	Intergenic	Intergenic	-2059.0	NM_011915	24117.0	Mm.32831	NM_011915	ENSMUSG00000020218	Wif1	AW107799|WIF-1	Wnt inhibitory factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-88317330-1	chr8	88317230	88317430	+	741.0	f1_balb.idr	intron (NM_001037724, intron 12 of 27)	intron (NM_001037724, intron 12 of 27)	23126.0	NM_001037724	11513.0	Mm.288206	NM_007406	ENSMUSG00000031659	Adcy7	AA407758	adenylate cyclase 7	protein-coding	2.16037163384463	1.16828036207793	1.13337401329579	2.64612387162644	1.06289523684921	1.90680900736078	2.89793920888572	2.73472807326284	0.849899690377363	0.461833444827407	0.921194606787634
Merged-chr2-152707740-4	chr2	152707587	152707787	+	933.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001159551, exon 13 of 13)	3' UTR (NM_001159551, exon 13 of 13)	20539.0	NM_025543	66405.0	Mm.440291	NM_025543	ENSMUSG00000042814	Mcts2	2400002F11Rik|MCT-2	malignant T cell amplified sequence 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-66928340-4	chr10	66928250	66928450	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7966.0	NR_138561	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120749606-4	chr11	120749516	120749716	+	878.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17595.0	NM_007621	12409.0	Mm.21454	NM_007621	ENSMUSG00000025150	Cbr2	MLCR	carbonyl reductase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-79265834-4	chr2	79265747	79265947	+	741.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010576, intron 2 of 27)	intron (NM_010576, intron 2 of 27)	10421.0	NM_010576	16401.0	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135018230-4	chr4	135018121	135018321	+	926.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	87241.0	NM_026780	68592.0	Mm.29989	NM_026780	ENSMUSG00000028821	Syf2	1110018L13Rik|Cbpin|D4Bwg1551e|Gcipip|Ntc31|mp29|p29	SYF2 homolog, RNA splicing factor (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-19038365-4	chr2	19038273	19038473	+	942.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40054.0	NR_024323	74629.0	Mm.117687	NR_024323	ENSMUSG00000026736	4930426L09Rik	-	RIKEN cDNA 4930426L09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-7278300-4	chr7	7278186	7278386	+	973.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_003555)	promoter-TSS (NR_003555)	3.0	NR_003555	76229.0	Mm.387947	NM_001113468	ENSMUSG00000095730	Vmn2r29	6430701C03Rik	vomeronasal 2, receptor 29	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6458572-2	chr19	6458472	6458672	+	817.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205235, intron 6 of 21)	intron (NM_001205235, intron 6 of 21)	39834.0	NM_001205234	18190.0	Mm.329616	NM_020253	ENSMUSG00000033768	Nrxn2	6430591O13Rik|mKIAA0921	neurexin II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-115085815-3	chr4	115085732	115085932	+	750.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2876.0	NM_001164558	67182.0	Mm.30181	NM_026018	ENSMUSG00000028716	Pdzk1ip1	0610007F13Rik|2700030M23Rik|AU046042|Map17	PDZK1 interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111759875-3	chr12	111759780	111759980	+	956.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361610, intron 1 of 14)	intron (NM_001361610, intron 1 of 14)	1012.0	NM_001025361	16593.0	Mm.278357	NM_008450	ENSMUSG00000021288	Klc1	AI874768|Kns2	kinesin light chain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-5857408-2	chr13	5857308	5857508	+	545.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045891, intron 1 of 2)	intron (NR_045891, intron 1 of 2)	684.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-74240361-4	chr1	74240314	74240514	+	708.216675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357387, intron 2 of 10)	intron (NM_001357387, intron 2 of 10)	3897.0	NM_029711	76709.0	Mm.337038	NM_029711	ENSMUSG00000006304	Arpc2	2210023N03Rik|34kDa|p34-Arc	actin related protein 2/3 complex, subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-35931903-3	chr3	35931805	35932005	+	756.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205361, intron 1 of 6)	intron (NM_001205361, intron 1 of 6)	429.0	NM_001205362	114893.0	Mm.374810	NM_033623	ENSMUSG00000027708	Dcun1d1	Rp42|SCCRO|Tes3|pTes3	DCN1, defective in cullin neddylation 1, domain containing 1 (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46921320-3	chr8	46921218	46921418	+	597.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65569.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-58092886-6	chr11	58092818	58093018	+	884.388916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11052.0	NM_026949	69125.0	Mm.28910	NM_026949	ENSMUSG00000020515	Cnot8	1500015I04Rik|1810022F04Rik|AA536816|AU015770|AU043059	CCR4-NOT transcription complex, subunit 8	protein-coding	2.73774415222086	3.95710467035653	4.45476877313298	3.42288242404414	3.27088877037003	3.6727304081363	4.1042679035952	3.44079977923448	-0.188510780976389	0.739409162464479	0.998431161219273
Merged-chr14-20067509-4	chr14	20067421	20067621	+	900.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15651.0	NM_026209	67509.0	Mm.292423	NM_026209	ENSMUSG00000045107	Saysd1	1810063B07Rik|4930488P03Rik	SAYSVFN motif domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167483304-4	chr2	167483222	167483422	+	883.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_170756, exon 3 of 3)	3' UTR (NM_170756, exon 3 of 3)	-9323.0	NM_030743	81018.0	Mm.22225	NM_030743	ENSMUSG00000006418	Rnf114	1110008J21Rik|AI225886|AW549494|Zfp228|Zfp313|Znf228	ring finger protein 114	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-3421411-4	chr5	3421311	3421511	+	997.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 3 of 7)	L1_Mus1|LINE|L1	77518.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5092380-2	chr19	5092280	5092480	+	777.333374	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001302333)	TTS (NM_001302333)	3842.0	NM_026553	68090.0	Mm.44202	NM_026553	ENSMUSG00000024875	Yif1a	5330422J23Rik|54TM|Yif1|Yif1p	Yip1 interacting factor homolog A (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-50375839-4	chr6	50375745	50375945	+	982.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163645, intron 2 of 21)	intron (NM_001163645, intron 2 of 21)	6992.0	NM_027881	71720.0	Mm.44153	NM_027881	ENSMUSG00000029822	Osbpl3	1200014M06Rik|6720421I08Rik|A530055M08|ORP-3|ORP3|OSBP3	oxysterol binding protein-like 3	protein-coding	3.19408651967043	3.019776170015	1.6323876577781	3.29016610414639	3.81148318590523	3.15546895071663	2.68324591283176	3.57924637745726	0.742609131520722	0.291789990625879	0.796128548904676
Merged-chr1-78703107-4	chr1	78703026	78703226	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033606, intron 12 of 14)	intron (NM_001033606, intron 12 of 14)	44686.0	NM_001136226	195434.0	Mm.276016	NM_001001981	ENSMUSG00000079470	Utp14b	4932411L21Rik|jsd	UTP14B small subunit processome component	protein-coding	4.7580623619027	4.67400326125001	4.09825578162209	4.68428183590971	5.53361528902922	4.65217453780581	5.24097962517945	4.47717114262421	0.573317545557675	0.127114500314715	0.557834592090692
Merged-chr11-120713347-2	chr11	120713247	120713447	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153545)	promoter-TSS (NM_153545)	420.0	NM_016665	20892.0	Mm.259716	NM_016665	ENSMUSG00000025144	Cenpx	Stra13	centromere protein X	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-59918284-2	chr19	59918184	59918384	+	734.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033172, intron 3 of 5)	intron (NM_001033172, intron 3 of 5)	25080.0	NM_001033172	74998.0	Mm.24167	NM_001033172	ENSMUSG00000040022	Rab11fip2	4930470G04Rik|A830046J09Rik|AW558126|Nrip11	RAB11 family interacting protein 2 (class I)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-78296128-2	chr9	78296028	78296228	+	743.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001122660, intron 2 of 6)	intron (NM_001122660, intron 2 of 6)	6200.0	NM_001122660	100042314.0	Mm.482247	NM_001122660	ENSMUSG00000074179	Gm10639	-	predicted gene 10639	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-79348288-4	chr15	79348180	79348380	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001304832)	promoter-TSS (NM_001304832)	-122.0	NM_001304832	17133.0	Mm.86646	NM_010755	ENSMUSG00000042622	Maff	-	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein F (avian)	protein-coding	4.71055734938089	4.70448518917705	4.25306768873868	4.39760214307593	4.50897418851739	4.23418964414726	4.34161823242261	2.75551735197165	-0.543923301312321	0.238988649614015	0.735635286471347
Merged-chr10-120164332-2	chr10	120164232	120164432	+	823.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359184, intron 8 of 11)	intron (NM_001359184, intron 8 of 11)	37265.0	NM_028679	73914.0	Mm.146194	NM_028679	ENSMUSG00000020227	Irak3	4833428C18Rik|AI563835|IRAK-M	interleukin-1 receptor-associated kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99434975-4	chr7	99434850	99435050	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362168, intron 4 of 17)	intron (NM_001362168, intron 4 of 17)	-31054.0	NM_028145	72184.0	Mm.153585	NM_028145	ENSMUSG00000035298	Klhl35	2810406K13Rik	kelch-like 35	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-97027058-4	chr7	97026958	97027158	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153591, intron 7 of 13)	intron (NM_153591, intron 7 of 13)	-54693.0	NM_001162477	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	3.24931705120685	3.84152716982654	3.71276330408388	4.45978744781786	4.36503668385411	3.95067525946664	4.21814200369551	4.1514222880219	0.405544084550395	0.384749653280331	0.875833482176337
Merged-chr5-135551787-4	chr5	135551709	135551909	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-6687.0	NM_146001	215114.0	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding	4.4452195742918	3.8599998177662	4.17834237740846	3.92991105473603	4.7616310397306	4.78672437260642	4.85471572778624	4.76081002362037	0.839034333574784	0.0255167508955113	0.212505768563868
Merged-chr10-14133103-4	chr10	14133015	14133215	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358782, intron 5 of 9)	intron (NM_001358782, intron 5 of 9)	166736.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-84959593-2	chr17	84959493	84959693	+	753.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011151, intron 1 of 5)	intron (NM_011151, intron 1 of 5)	1592.0	NM_001159496	19043.0	Mm.249695	NM_011151	ENSMUSG00000061130	Ppm1b	PP2CB	protein phosphatase 1B, magnesium dependent, beta isoform	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95986532-4	chr3	95986408	95986608	+	934.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045872, exon 3 of 3)	non-coding (NR_045872, exon 3 of 3)	998.0	NR_045872	668224.0	Mm.357766	NR_045872		Gm9054	EG668224	predicted gene 9054	ncRNA	3.80191494716164	3.73403060848139	3.45583731802533	3.27421088246001	3.04167559575112	2.93206347942453	4.01949322259427	3.19866584112733	-0.321506271825845	0.569275386846033	0.962718661854691
Merged-chr19-37439457-3	chr19	37439362	37439562	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008245, intron 3 of 3)	intron (NM_008245, intron 3 of 3)	4621.0	NM_008245	15242.0	Mm.33896	NM_008245	ENSMUSG00000024986	Hhex	Hex|Hex1|Hhex-rs2|Prh|Prhx	hematopoietically expressed homeobox	protein-coding	-1.84335282827126	-1.8131721693203	-1.82229904969614	-1.82979614098203	-1.69762670694229	-1.6675868413945	-1.82023292403457	-1.82845416522631	1.43472749533542	0.684151459466795	1
Merged-chr19-40831296-4	chr19	40831224	40831424	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172839)	promoter-TSS (NM_172839)	45.0	NM_172839	240665.0	Mm.309	NM_172839	ENSMUSG00000025010	Ccnj	D430039C20Rik	cyclin J	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91691696-2	chr16	91691596	91691796	+	732.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026994, intron 10 of 11)	B1_Mus1|SINE|Alu	2798.0	NR_040389	100038392.0	Mm.440384	NR_040389	ENSMUSG00000085169	Gm10785	-	predicted gene 10785	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-122406757-3	chr14	122406661	122406861	+	848.4111330000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033326, intron 1 of 3)	CpG	44354.0	NR_033325	328479.0	Mm.86095	NR_033325	ENSMUSG00000064052	Gm5089	6530402A20|C030005G22Rik|EG328479	predicted gene 5089	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-43579530-4	chr7	43579390	43579590	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172482)	promoter-TSS (NM_172482)	-96.0	NM_172482	210105.0	Mm.234422	NM_172482	ENSMUSG00000030469	Zfp719	8030458J18|9430094P17Rik|C630016O21Rik|mszf6	zinc finger protein 719	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-52672796-4	chr6	52672706	52672906	+	987.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER45B|DNA|hAT-Tip100	-32506.0	NM_145567	58875.0	Mm.286458	NM_145567	ENSMUSG00000029776	Hibadh	6430402H10Rik|AI265272	3-hydroxyisobutyrate dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55794792-2	chr19	55794692	55794892	+	639.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001331146, intron 4 of 14)	intron (NM_001331146, intron 4 of 14)	52982.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100702679-4	chr11	100702516	100702716	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030150, intron 4 of 12)	B2_Mm2|SINE|B2	1655.0	NM_030150	80861.0	Mm.271830	NM_030150	ENSMUSG00000017830	Dhx58	B430001I08Rik|D11Lgp2e|LPG2|Lgp2|RLR-3	DEXH (Asp-Glu-X-His) box polypeptide 58	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28593189-2	chr17	28593089	28593289	+	805.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_016795, intron 13 of 15)	intron (NM_016795, intron 13 of 15)	17470.0	NM_026571	328789.0	Mm.284760	NM_026571	ENSMUSG00000062252	Lhfpl5	9330179O15Rik|Tmhs|hscy	lipoma HMGIC fusion partner-like 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85397323-4	chr12	85397244	85397444	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22627.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-156257337-4	chr2	156257245	156257445	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172674, intron 4 of 17)	intron (NM_172674, intron 4 of 17)	-55128.0	NM_027585	70873.0	Mm.475234	NM_027585	ENSMUSG00000038085	Cnbd2	4921517L17Rik|5430421B09Rik|Cris	cyclic nucleotide binding domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-27197950-2	chr7	27197850	27198050	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290513, intron 2 of 7)	intron (NM_001290513, intron 2 of 7)	-1679.0	NM_001285825	53607.0	Mm.386890	NM_015782	ENSMUSG00000061479	Snrpa	C430021M15Rik|Rnu1a-1|Rnu1a1|U1-A|U1A	small nuclear ribonucleoprotein polypeptide A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-65049327-2	chr6	65049227	65049427	+	766.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253392, intron 1 of 21)	intron (NM_001253392, intron 1 of 21)	6121.0	NM_001253392	13990.0	Mm.99113	NM_007958	ENSMUSG00000029920	Smarcad1	AV081750|AW226546|D6Pas1|Etl1|etl-1|mKIAA1122	SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-34194637-4	chr19	34194563	34194763	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360718, intron 1 of 10)	(CA)n|Simple_repeat|Simple_repeat	1729.0	NM_001360718	76630.0	Mm.130952	NM_029682	ENSMUSG00000024776	Stambpl1	1700095N21Rik|8230401J17Rik|ALMalpha|AMSH-FP	STAM binding protein like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-26789455-4	chr11	26789355	26789555	+	851.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4347.0	NR_002890	654472.0	Mm.347777	NR_002890		Gm12070	-	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-60866537-2	chr2	60866437	60866637	+	580.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	14901.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-62579002-2	chr10	62578902	62579102	+	620.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028197)	promoter-TSS (NM_028197)	-545.0	NM_028197	72320.0	Mm.258955	NM_028197	ENSMUSG00000036955	Kif1bp	0710007C18Rik|2510003E04Rik|KBP|mKIAA1279	KIF1 binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-129339419-4	chr7	129339312	129339512	+	880.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080963, intron 5 of 6)	intron (NM_001080963, intron 5 of 6)	82318.0	NM_001080963	381925.0	Mm.39184	NM_001080963	ENSMUSG00000070366	Plpp4	C030048B12Rik|Gm1090|Ppapdc1a	phospholipid phosphatase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-76764466-2	chr16	76764366	76764566	+	624.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_155453, intron 1 of 3)	intron (NR_155453, intron 1 of 3)	14626.0	NR_155453	102632814.0		NR_155453	ENSMUSG00000109333	Gm30790	Gm45028	predicted gene, 30790	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-80163431-2	chr12	80163331	80163531	+	627.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30587.0	NR_033514	69548.0	Mm.269712	NR_033514		2310015A10Rik	5330419I17Rik	RIKEN cDNA 2310015A10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34259155-3	chr17	34258968	34259168	+	940.93335	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4159.0	NM_207105	14961.0	Mm.254067	NM_207105	ENSMUSG00000073421	H2-Ab1	AI845868|Abeta|H-2Ab|H2-Ab|I-Abeta|IAb|Ia-2|Ia2|Rmcs1	histocompatibility 2, class II antigen A, beta 1	protein-coding	2.01805087819148	1.50984600623246	0.917330965911208	1.41447045210964	1.3527705463767	0.936780444085802	1.31641584888976	1.76055390808036	-0.535421918735479	0.674805512229323	0.99440487726309
Merged-chr12-98777629-3	chr12	98777539	98777739	+	770.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001008506, intron 10 of 14)	L2|LINE|L2	6617.0	NM_001160108	75553.0	Mm.25549	NM_029334	ENSMUSG00000021012	Zc3h14	1010001P15Rik|1700016A15Rik|2700069A02Rik|AU014748	zinc finger CCCH type containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127275460-2	chr7	127275360	127275560	+	995.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F2|SINE|Alu	-1401.0	NM_009266	20768.0	Mm.20294	NM_009266	ENSMUSG00000049091	Sephs2	Sps2|Ysg3	selenophosphate synthetase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-164787206-4	chr2	164787106	164787306	+	892.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133924, intron 2 of 2)	MIR|SINE|MIR	1185.0	NM_133924	101113.0	Mm.295647	NM_133924	ENSMUSG00000050373	Snx21	5730407K14Rik|AI481716	sorting nexin family member 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-51166290-4	chr14	51166192	51166392	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4032.0	NM_019398	54159.0	Mm.377125	NM_019398	ENSMUSG00000059606	Rnase2b	Ear5|Raf4|mR5	ribonuclease, RNase A family, 2B (liver, eosinophil-derived neurotoxin)	protein-coding	-1.00250420537372	-0.984126430401196	-0.996293518424774	-0.998795766628115	-0.850883418161482	-0.981489771670267	-0.993539156391212	-0.345956097206146	2.97099761780372	0.333931704018653	1
Merged-chr14-54776333-4	chr14	54776211	54776411	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016972, intron 1 of 10)	intron (NM_016972, intron 1 of 10)	5575.0	NM_016972	50934.0	Mm.276831	NM_016972	ENSMUSG00000022180	Slc7a8	AA408822|LAT2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	protein-coding	4.31468219033195	4.65135586102808	4.60518084220739	4.53176427077744	4.59564242678878	4.87702045044474	4.68546708952422	4.91243102181932	0.305185563775996	0.382098952446918	0.873396688145393
Merged-chr10-80073873-3	chr10	80073789	80073989	+	917.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359635, intron 4 of 31)	intron (NM_001359635, intron 4 of 31)	1550.0	NM_001359636	216161.0	Mm.262102	NM_183426	ENSMUSG00000035673	Sbno2	BC019206|F730040C21|Sno|Stno	strawberry notch 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-165613901-2	chr1	165613801	165614001	+	618.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083897, intron 1 of 5)	intron (NM_001083897, intron 1 of 5)	20640.0	NM_001001880	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-67477318-3	chr1	67477213	67477413	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	354286.0	NM_001080809	227231.0	Mm.343942	NM_001080809	ENSMUSG00000025991	Cps1	4732433M03Rik|CPS|D1Ucla3	carbamoyl-phosphate synthetase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-78180596-2	chr11	78180496	78180696	+	546.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_207523)	TTS (NM_207523)	750.0	NR_037682	100529076.0		NR_037682		Snord42a	MBII-292|U42A	small nucleolar RNA, C/D box 42A	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-40129384-3	chr10	40129297	40129497	+	953.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 1 of 5)	intron (NM_001114332, intron 1 of 5)	12857.0	NM_028247	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-79356490-2	chr15	79356390	79356590	+	947.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_001304832, intron 1 of 2)	RSINE1|SINE|B4	8088.0	NM_001304832	17133.0	Mm.86646	NM_010755	ENSMUSG00000042622	Maff	-	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein F (avian)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153136977-2	chr2	153136877	153137077	+	570.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001172117, intron 9 of 12)	intron (NM_001172117, intron 9 of 12)	-24324.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-55488897-4	chr12	55488791	55488991	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010907)	TTS (NM_010907)	3756.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-9940949-2	chr19	9940800	9941000	+	783.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-39700.0	NR_073181	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	-0.0549946567942303	-0.579401247714312	-0.582651726908883	-0.585149331105525	-0.588663422677184	-0.578666491261472	-0.264271209337846	-0.426134868395266	-0.37699026547189	0.888711316188398	1
Merged-chr2-181219955-6	chr2	181219773	181219973	+	874.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199312)	promoter-TSS (NM_199312)	-143.0	NM_199312	332713.0	Mm.23349	NM_199312	ENSMUSG00000047841	Fndc11	1700026M20Rik	fibronectin type III domain containing 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-51178654-4	chr6	51178541	51178741	+	958.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	91269.0	NR_029719	387166.0		NR_029719	ENSMUSG00000065505	Mir148a	Mirn148|Mirn148a|mir-148a	microRNA 148a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-104393814-1	chr8	104393714	104393914	+	547.0	f0_balb.idr	intron (NM_153582, intron 1 of 3)	intron (NM_153582, intron 1 of 3)	1993.0	NM_153582	97487.0	Mm.29658	NM_153582	ENSMUSG00000096188	Cmtm4	Cklfsf4|D19397|Gm9853	CKLF-like MARVEL transmembrane domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-103036845-3	chr12	103036746	103036946	+	796.527771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081017, intron 7 of 48)	L1MEc|LINE|L1	87987.0	NM_001081017	217843.0	Mm.387073	NM_177621	ENSMUSG00000021198	Unc79	9030205A07Rik|Mlca3	unc-79 homolog (C. elegans)	protein-coding	2.15160089463147	2.26944950256445	2.88864084833299	2.13724282641987	1.91585578700638	2.28555168991481	2.34369964457123	2.58317453846808	-0.231973453998987	0.77952703715902	0.998431161219273
Merged-chr8-111036322-2	chr8	111036222	111036422	+	894.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146217, intron 1 of 20)	intron (NM_146217, intron 1 of 20)	2480.0	NM_146217	234734.0	Mm.24174	NM_146217	ENSMUSG00000031960	Aars	AI316495|C76919|sti	alanyl-tRNA synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-24436370-2	chr8	24436270	24436470	+	879.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	IMPB_01|Satellite|Satellite	2576.0	NM_026931	69068.0	Mm.25775	NM_026931	ENSMUSG00000056313	Tcim	1110065B09Rik|1810011O10Rik|AW121743|AW321058	transcriptional and immune response regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3084238-2	chr19	3084138	3084338	+	925.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	MMVL30-int|LTR|ERV1	113465.0	NR_045304	70011.0	Mm.393871	NR_045304	ENSMUSG00000100969	1700030N03Rik	1700087C08Rik	RIKEN cDNA 1700030N03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-108306174-4	chr9	108306072	108306272	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001313961)	promoter-TSS (NM_001313961)	12.0	NM_016802	11848.0	Mm.757	NM_016802	ENSMUSG00000007815	Rhoa	Arha|Arha1|Arha2	ras homolog family member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-73244326-2	chr8	73244226	73244426	+	556.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010687, intron 1 of 14)	intron (NM_010687, intron 1 of 14)	109214.0	NM_001317391	16795.0	Mm.324371	NM_010687	ENSMUSG00000004383	Large1	BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd	LARGE xylosyl- and glucuronyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-80689131-2	chr18	80689031	80689231	+	792.883301	f1_balb.idr|f1_c57bl6.idr	intron (NM_198429, intron 2 of 9)	intron (NM_198429, intron 2 of 9)	19042.0	NM_001164111	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-25891755-4	chr15	25891666	25891866	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034851, intron 2 of 8)	ID_B1|SINE|B4	-41786.0	NM_001277318	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-54522055-2	chr11	54521955	54522155	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175258)	promoter-TSS (NM_175258)	-790.0	NM_001252494	192786.0	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-94725625-2	chr12	94725525	94725725	+	582.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	798287.0	NR_106175	102465890.0		NR_106175	ENSMUSG00000098498	Mir8099-1	Gm27917|mmu-mir-8099-1	microRNA 8099-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-111141217-1	chr5	111141117	111141317	+	839.0	f0_balb.idr	intron (NM_001267622, intron 5 of 22)	intron (NM_001267622, intron 5 of 22)	137073.0	NR_030482	735278.0		NR_030482	ENSMUSG00000076163	Mir701	Mirn701|mir-701|mmu-mir-701	microRNA 701	ncRNA	0.509358352890118	0.115462981180083	0.262279002553042	0.108242925492651	0.593034281908285	0.116392442780977	0.513295322182539	0.108786973954386	0.772380536561137	0.711209330175921	1
Merged-chr12-85123250-4	chr12	85123147	85123347	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030225, intron 9 of 14)	intron (NM_030225, intron 9 of 14)	12414.0	NM_030225	78920.0	Mm.296221	NM_030225	ENSMUSG00000004789	Dlst	1600017E01Rik|4632413C10Rik|4930529O08Rik|DLTS	dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-30695786-4	chr14	30695696	30695896	+	924.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19053.0	NM_019460	54650.0	Mm.294662	NM_019460	ENSMUSG00000006527	Sfmbt1	4930442N21Rik|9330180L21Rik|AA536974|Sfmbt|Smr	Scm-like with four mbt domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46482344-2	chr19	46482242	46482442	+	741.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025391, intron 10 of 11)	intron (NM_001025391, intron 10 of 11)	-19306.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-59214268-2	chr3	59214168	59214368	+	622.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177855, intron 15 of 43)	B4|SINE|B4	-3386.0	NM_028808	74191.0	Mm.90067	NM_028808	ENSMUSG00000036362	P2ry13	2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174	purinergic receptor P2Y, G-protein coupled 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-14873486-1	chr3	14873386	14873586	+	618.0	f1_c57bl6.idr	Intergenic	Intergenic	9948.0	NM_007606	12350.0	Mm.300	NM_007606	ENSMUSG00000027559	Car3	BB219044|Ca3|Car-3	carbonic anhydrase 3	protein-coding	0.718875015171369	0.325032915307513	1.15090460566243	0.309553785005965	0.465689673985169	0.326982645691032	0.318257234822325	1.19471666238298	-0.182856166245347	0.921519339023763	1
Merged-chr18-12168638-4	chr18	12168536	12168736	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029623)	promoter-TSS (NM_029623)	-94.0	NM_029623	76482.0	Mm.196596	NM_029623	ENSMUSG00000024410	3110002H16Rik	2400010D15Rik|Mic-1|Mic1|Rmc1|Wdr98	RIKEN cDNA 3110002H16 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-120544945-4	chr2	120544870	120545070	+	917.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011743, intron 3 of 21)	Lx7|LINE|L1	18889.0	NM_011743	20402.0	Mm.485295	NM_011743	ENSMUSG00000027288	Zfp106	Cd-1|D2Dcr28|EyeLinc12|H3a|Sh3bp3|Znf106|sirm|zfp-106	zinc finger protein 106	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-22815417-4	chr11	22815318	22815518	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	44317.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-9916966-2	chr19	9916866	9917066	+	632.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-17433.0	NM_016692	16319.0	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-138737723-2	chr5	138737623	138737823	+	602.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-17358.0	NM_030565	80752.0	Mm.320355	NM_030565	ENSMUSG00000025854	Fam20c	C76981|DMP-4|DMP4|GEF-CK|mKIAA4081	family with sequence similarity 20, member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-62207495-2	chr10	62207395	62207595	+	827.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_197996, intron 1 of 7)	intron (NM_197996, intron 1 of 7)	-13268.0	NR_106122	102465767.0		NR_106122	ENSMUSG00000099185	Mir7662	Gm27876|mmu-mir-7662	microRNA 7662	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-98096033-2	chr3	98095933	98096133	+	584.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010928, intron 5 of 33)	intron (NM_010928, intron 5 of 33)	-64601.0	NM_027665	71078.0	Mm.50711	NM_027665	ENSMUSG00000043468	Adam30	4933424D07Rik|svph4	a disintegrin and metallopeptidase domain 30	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-85574650-4	chr3	85574536	85574736	+	833.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144896, intron 1 of 12)	intron (NM_144896, intron 1 of 12)	507.0	NM_144896	229487.0	Mm.52275	NM_144896	ENSMUSG00000028085	Gatb	9430026F02Rik|Pet112|Pet112l	glutamyl-tRNA(Gln) amidotransferase, subunit B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-110930619-4	chr7	110930529	110930729	+	800.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194464, intron 2 of 20)	intron (NM_194464, intron 2 of 20)	15558.0	NM_010826	17540.0	Mm.250023	NM_010826	ENSMUSG00000005611	Mrvi1	BB115629|Irag|Ris1	MRV integration site 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-77795439-4	chr14	77795334	77795534	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033440, intron 2 of 2)	intron (NM_001033440, intron 2 of 2)	3534.0	NM_001033440	380920.0	Mm.297771	NM_001033440	ENSMUSG00000075512	Gm1587	-	predicted gene 1587	protein-coding	7.53934413708104	7.3706163755979	7.51463244843732	7.34056496091686	6.72653468554008	6.98204766195014	6.39823727154442	7.12448490670281	-0.642650290441394	0.000322456086440704	0.00774798689943038
Merged-chr12-112999922-2	chr12	112999822	113000022	+	607.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028193, intron 1 of 17)	CpG	699.0	NM_028193	72308.0	Mm.196721	NM_028193	ENSMUSG00000011158	Brf1	2510002F24Rik|GTF3B|TAF3C|TAFIII90|TFIIIB90|mTFIIIB90	BRF1, RNA polymerase III transcription initiation factor 90 kDa subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-6248626-3	chr6	6248517	6248717	+	985.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_136906)	promoter-TSS (NR_136906)	-42.0	NR_136906	101056138.0	Mm.389085	NR_136904	ENSMUSG00000093482	Gm20619	-	predicted gene 20619	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-82719542-2	chr11	82719442	82719642	+	841.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009839, intron 13 of 13)	intron (NM_009839, intron 13 of 13)	44779.0	NM_009839	12467.0	Mm.4126	NM_009839	ENSMUSG00000020698	Cct6b	CCT-zeta-2|CCTzeta-2|Cctz-2|TCP-1-zeta-2	chaperonin containing Tcp1, subunit 6b (zeta)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-84316940-5	chr12	84316857	84317057	+	889.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045546)	promoter-TSS (NR_045546)	98.0	NM_001252583	52708.0	Mm.255150	NM_144833	ENSMUSG00000042472	Zfp410	Apa1|D12Ertd748e|Znf410	zinc finger protein 410	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-41809642-4	chr10	41809547	41809747	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001243075)	promoter-TSS (NM_001243075)	16.0	NM_001243075	103268.0	Mm.338605	NM_026643	ENSMUSG00000019813	Cep57l1	2410017P07Rik|4930484D11Rik|AI607327|cep57R	centrosomal protein 57-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43239986-2	chr4	43239886	43240086	+	547.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081413, intron 19 of 39)	intron (NM_001081413, intron 19 of 39)	-27173.0	NM_177195	320571.0	Mm.74465	NM_177195	ENSMUSG00000028457	Atp8b5	4930417M19Rik|Feta	ATPase, class I, type 8B, member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-35450413-1	chr2	35450313	35450513	+	568.0	f0_c57.idr	intron (NM_010283, intron 1 of 8)	intron (NM_010283, intron 1 of 8)	11036.0	NM_001308299	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98362341-2	chr11	98362241	98362441	+	883.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021547, intron 1 of 14)	intron (NM_021547, intron 1 of 14)	3973.0	NM_021547	59045.0	Mm.265546	NM_021547	ENSMUSG00000018167	Stard3	Mln64|es64	START domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-140955500-4	chr7	140955367	140955567	+	968.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030694, intron 1 of 1)	intron (NM_030694, intron 1 of 1)	494.0	NM_030694	80876.0	Mm.379266	NM_030694	ENSMUSG00000060591	Ifitm2	DSPA2c|Ifitm3l|fragilis3|mil-3	interferon induced transmembrane protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3926304-3	chr12	3926205	3926405	+	737.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28640.0	NM_001278581	18976.0	Mm.277996	NM_008895	ENSMUSG00000020660	Pomc	ACTH|BE|Beta-LPH|Clip|Gamma-LPH|Npp|Pomc-1|Pomc1|alpha-MSH|alphaMSH|beta-MSH|gamma-MSH	pro-opiomelanocortin-alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-16508257-4	chr11	16508152	16508352	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_011343, exon 1 of 4)	5' UTR (NM_011343, exon 1 of 4)	232.0	NM_011343	20335.0	Mm.325350	NM_011343	ENSMUSG00000078974	Sec61g	-	SEC61, gamma subunit	protein-coding	4.13564203212365	4.22619060211866	3.51359706070575	3.73064509450833	3.76399187129161	4.51588476379646	3.54055081911031	3.60012504184578	-0.0284011143039846	0.953692685539097	0.998431161219273
Merged-chr3-100919686-2	chr3	100919586	100919786	+	610.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2807.0	NM_001165952	229644.0	Mm.189351	NM_194343	ENSMUSG00000033233	Trim45	4921530N01Rik	tripartite motif-containing 45	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129373489-4	chr2	129373373	129373573	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015474, intron 2 of 2)	intron (NR_015474, intron 2 of 2)	-2334.0	NM_008361	16176.0	Mm.222830	NM_008361	ENSMUSG00000027398	Il1b	IL-1beta|Il-1b	interleukin 1 beta	protein-coding	6.78078699020778	6.20261494230546	6.54544612157993	6.17427570304985	6.31537574623179	5.80599010724971	6.5256494292344	6.13017144395926	-0.250746973914323	0.281973945694703	0.784607383364121
Merged-chr4-3768261-1	chr4	3768161	3768361	+	1000.0	f1_balb.idr	intron (NM_001111096, intron 10 of 12)	intron (NM_001111096, intron 10 of 12)	53297.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	2.13332682900129	2.50405783891857	1.80124896164143	1.44239511892623	2.22794037237106	1.06624420459472	1.04187509747575	1.25612181140979	-1.38426696832508	0.239129021820135	0.735635286471347
Merged-chr15-20525548-1	chr15	20525448	20525648	+	541.0	f1_balb.idr	Intergenic	L1_Mus2|LINE|L1	141202.0	NM_022816	64833.0	Mm.352763	NM_022816	ENSMUSG00000047565	Acot10	Acate3|MT-ACT48|p48	acyl-CoA thioesterase 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-123508440-4	chr3	123508359	123508559	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028574)	promoter-TSS (NR_028574)	-123.0	NR_028574	69895.0	Mm.260791	NR_028574	ENSMUSG00000104960	Snhg8	1110065M07Rik|2010109N14Rik	small nucleolar RNA host gene 8	ncRNA	4.19987107134976	5.29328648957454	4.61260483102026	4.22145467907891	2.4977786787121	3.8439706979299	3.42839120740803	3.20515588344542	-1.82758004341306	0.000304572171778625	0.00742735145731695
Merged-chr3-27185689-2	chr3	27185589	27185789	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 1 of 4)	intron (NM_178772, intron 1 of 4)	2685.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191850963-4	chr1	191850879	191851079	+	981.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	29506.0	NM_010892	18005.0	Mm.33773	NM_010892	ENSMUSG00000026622	Nek2	AA617254|C77054	NIMA (never in mitosis gene a)-related expressed kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-35144550-2	chr7	35144471	35144671	+	662.299988	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25278.0	NM_007678	12606.0	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	3.71669701147646	3.06747649463206	3.76782295986593	3.29176860885076	3.69215624877549	3.32766679067488	3.65633268107884	3.30858809447798	0.0185049009200634	0.97243749227451	0.998431161219273
Merged-chr3-15179697-4	chr3	15179600	15179800	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	152602.0	NM_001076679	751864.0	Mm.431296	NM_001076679	ENSMUSG00000078783	Gm9733	-	predicted gene 9733	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171613617-1	chr1	171613517	171613717	+	615.0	f0_balb.idr	Intergenic	Intergenic	-6207.0	NM_001277968	17085.0	Mm.560	NM_008534	ENSMUSG00000004707	Ly9	AI893573|CD229|Lgp100|Ly-9|SLAMF3|T100	lymphocyte antigen 9	protein-coding	-0.905742099470495	-0.892888590775455	-0.900269952640237	-0.902333040496329	-0.440683659817434	-0.705647773866351	-0.899678880236616	-0.741054048758773	2.92046771785312	0.303611059186454	1
Merged-chr17-35425260-3	chr17	35425135	35425335	+	972.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_023124, exon 2 of 5)	exon (NM_023124, exon 2 of 5)	358.0	NM_207648	110557.0	Mm.439827	NM_207648	ENSMUSG00000073409	H2-Q6	0610037M15Rik|H-2Q6|Qa-6|Qa6	histocompatibility 2, Q region locus 6	protein-coding	2.57923377938874	1.43861572141243	2.17333980972446	2.24058514323894	2.14624891666815	2.52242497683049	2.43951512343688	2.72943552952787	0.667249623659043	0.444093874633923	0.912265842646861
Merged-chr15-30468439-2	chr15	30468342	30468542	+	862.5	f0_balb.idr|f0_c57.idr	intron (NM_001355502, intron 2 of 21)	intron (NM_001355502, intron 2 of 21)	295849.0	NM_008729	18163.0	Mm.321648	NM_008729	ENSMUSG00000022240	Ctnnd2	Catnd2|Nprap|neurojugin	catenin (cadherin associated protein), delta 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-101293948-1	chr3	101293848	101294048	+	801.666687	f0_balb.idr	Intergenic	Intergenic	-6009.0	NM_013486	12481.0	Mm.22842	NM_013486	ENSMUSG00000027863	Cd2	LFA-2|Ly-37|Ly37	CD2 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-64636641-2	chr14	64636541	64636741	+	740.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-15890.0	NM_001081177	16554.0	Mm.23611	NM_001081177	ENSMUSG00000060012	Kif13b	5330429L19Rik|6030414C01|AI429803|C130021D12Rik|GAKIN	kinesin family member 13B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-123855264-4	chr8	123855155	123855355	+	956.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028536, intron 2 of 3)	HAL1|LINE|L1	4954.0	NM_028536	73420.0	Mm.157746	NM_028536	ENSMUSG00000031971	Ccsap	1700054N08Rik|AI853424	centriole, cilia and spindle associated protein	protein-coding	3.57604735551386	3.74357924992287	3.74713857472398	3.45791445235727	2.71746744364804	1.71343408747078	3.06952520308287	2.74373908938217	-1.63780782312226	0.00995587424673429	0.108657288549713
Merged-chr7-142284812-4	chr7	142284714	142284914	+	964.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVB4_1-I_MM-int|LTR|ERVK	-10451.0	NM_001199309	100043627.0	Mm.388589	NM_001199309	ENSMUSG00000056885	Gm4559	-	predicted gene 4559	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127578243-4	chr10	127578172	127578372	+	968.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 21 of 88)	intron (NM_008512, intron 21 of 88)	42876.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-11966494-3	chr15	11966391	11966591	+	652.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040447)	promoter-TSS (NR_040447)	-571.0	NR_040447	73339.0	Mm.231975	NR_040447	ENSMUSG00000099349	1700047G03Rik	-	RIKEN cDNA 1700047G03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-22987459-2	chr11	22987359	22987559	+	799.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3134.0	NM_009837	12464.0	Mm.296985	NM_009837	ENSMUSG00000007739	Cct4	2610204B21Rik|A45|C78323|Cctd	chaperonin containing Tcp1, subunit 4 (delta)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-9037933-1	chr3	9037833	9038033	+	549.0	f1_c57bl6.idr	Intergenic	Intergenic	-24031.0	NR_040597	75149.0	Mm.399324	NR_040597	ENSMUSG00000103116	4930539M17Rik	-	RIKEN cDNA 4930539M17 gene	ncRNA	0.611001544801397	1.43079196770132	0.831334661557655	1.320076968763	0.61314166911851	1.04371840641713	1.27201532021523	0.813692808874475	-0.612544909261004	0.683387676093049	0.995882295196263
Merged-chr16-32696723-2	chr16	32696623	32696823	+	612.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	23569.0	NM_001289443	51789.0	Mm.251115	NM_016788	ENSMUSG00000022791	Tnk2	Ack|Ack-1|Ack1|Cdgip|Pyk1	tyrosine kinase, non-receptor, 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-89453145-2	chr1	89453045	89453245	+	717.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1666.0	NM_178119	347722.0	Mm.291135	NM_178119	ENSMUSG00000055013	Agap1	Centg2|Ggap1|R75364|mKIAA1099	ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46893142-4	chr8	46893066	46893266	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR33A|LTR|ERVL	-93721.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-11469552-2	chr4	11469452	11469652	+	643.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-16406.0	NM_001081183	66185.0	Mm.331487	NM_001081183	ENSMUSG00000040720	Virma	1110037F02Rik|4930422M05Rik|Kiaa1429|mKIAA1429	vir like m6A methyltransferase associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-119488981-2	chr13	119488881	119489081	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027974)	promoter-TSS (NR_027974)	121.0	NM_001177666	633640.0	Mm.46679	NM_001039244	ENSMUSG00000074634	Tmem267	EG633640|Gm7120	transmembrane protein 267	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140331892-4	chr5	140331790	140331990	+	945.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026510)	promoter-TSS (NM_026510)	8.0	NM_026510	68017.0	Mm.38894	NM_026510	ENSMUSG00000029557	Mrm2	2310037B18Rik|Ftsj2	mitochondrial rRNA methyltransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-149646361-2	chr4	149646271	149646471	+	783.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001290989, exon 16 of 18)	exon (NM_001290989, exon 16 of 18)	9196.0	NR_105990	102465983.0		NR_105990	ENSMUSG00000098580	Mir7023	Gm27912|mmu-mir-7023	microRNA 7023	ncRNA	2.7456767720688	2.50403382448795	2.41354672138367	1.17461773429403	2.70687407442677	2.52385202377688	1.2109704763147	1.17967485452797	-0.478846193705831	0.670819304151959	0.99359666617512
Merged-chr7-141578606-3	chr7	141578534	141578734	+	599.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357068, intron 1 of 21)	ORR1B1|LTR|ERVL-MaLR	16454.0	NM_007459	11772.0	Mm.253090	NM_007459	ENSMUSG00000002957	Ap2a2	2410074K14Rik|AF006990|AW146353|Adtab|C78001|L25	adaptor-related protein complex 2, alpha 2 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-87498530-2	chr6	87498430	87498630	+	548.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037727, intron 1 of 10)	intron (NM_001037727, intron 1 of 10)	-2203.0	NM_175476	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-136700834-4	chr3	136700743	136700943	+	911.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008913, intron 1 of 13)	intron (NM_008913, intron 1 of 13)	30777.0	NM_001293622	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-110465090-3	chr12	110464999	110465199	+	710.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001135001, intron 2 of 13)	intron (NM_001135001, intron 2 of 13)	17920.0	NM_001135001	26931.0	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-33953685-1	chr13	33953585	33953785	+	631.0	f1_c57bl6.idr	intron (NR_040707, intron 2 of 4)	intron (NR_040707, intron 2 of 4)	-10974.0	NM_001163239	18105.0	Mm.264036	NM_020282	ENSMUSG00000046949	Nqo2	NMO2|Nmor2|Ox2	N-ribosyldihydronicotinamide quinone reductase 2	protein-coding	-0.990650380700351	-0.904651015833861	-1.24251755869974	-1.25106517403754	-1.25878969348514	-1.22985680599037	-1.24016191879605	-1.2495351549788	-2.40917549759668	0.466501539218365	1
Merged-chr19-3437095-2	chr19	3436995	3437195	+	766.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22551.0	NM_010253	14419.0	Mm.4655	NM_010253	ENSMUSG00000024907	Gal	Galn	galanin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-29859996-4	chr7	29859894	29860094	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172740)	promoter-TSS (NM_172740)	15.0	NM_172740	233058.0	Mm.297657	NM_172740	ENSMUSG00000058402	Zfp420	B230119D13|B230312I18Rik|mszf59-1|mszf70	zinc finger protein 420	protein-coding	5.057977543325	4.93137806221694	4.94955272963639	4.4561010440182	5.6395098042125	5.72262982227232	5.17283004360075	5.10044158962739	0.665867301778418	0.0351488128672226	0.26541953317202
Merged-chr2-68927578-2	chr2	68927478	68927678	+	691.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347161, intron 1 of 10)	intron (NM_001347161, intron 1 of 10)	66137.0	NM_001347161	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-84402018-4	chr10	84401934	84402134	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004363, intron 2 of 6)	intron (NM_001004363, intron 2 of 6)	38437.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-31824202-2	chr2	31824102	31824302	+	706.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_178887, intron 4 of 6)	intron (NM_178887, intron 4 of 6)	-13622.0	NM_183424	227717.0	Mm.185027	NM_183424	ENSMUSG00000043102	Qrfp	P518	pyroglutamylated RFamide peptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41656226-4	chr19	41656135	41656335	+	828.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015748, intron 4 of 36)	intron (NM_015748, intron 4 of 36)	67584.0	NR_106166	102465884.0		NR_106166	ENSMUSG00000098286	Mir8091	Gm27575|mmu-mir-8091	microRNA 8091	ncRNA	4.34058871380711	4.19687796330564	3.80545585085428	4.30749966108597	3.60950244378062	3.4211574417681	3.06312248851256	3.48484726800396	-1.10178218320497	0.0209664382442307	0.185330544735471
Merged-chr5-32761861-3	chr5	32761777	32761977	+	946.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177298, intron 3 of 7)	ORR1B1-int|LTR|ERVL-MaLR	-15535.0	NM_001347332	320951.0	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	0.882072510707113	0.38812618785225	0.638841384025939	0.188247313034881	0.32516518410415	0.200151676413698	0.519877575629745	0.189050620630504	-1.73643942127751	0.362226455107512	1
Merged-chr17-88068477-2	chr17	88068377	88068577	+	563.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-3186.0	NM_001081034	225055.0	Mm.386857	NM_001081034	ENSMUSG00000005371	Fbxo11	C80048|Jf	F-box protein 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-6135144-3	chr18	6135037	6135237	+	962.2000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039692, intron 1 of 18)	intron (NM_001039692, intron 1 of 18)	961.0	NM_029277	75415.0	Mm.239675	NM_029277	ENSMUSG00000041225	Arhgap12	2810011M08Rik	Rho GTPase activating protein 12	protein-coding	3.43883836553512	4.88270284835518	4.16564237325999	3.86000893937972	3.46913224517005	4.60779483011588	4.00140120590867	4.56341346885699	0.061204709104053	0.900748780686014	0.998431161219273
Merged-chr19-55256456-4	chr19	55256338	55256538	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027976, intron 1 of 21)	L1MB5|LINE|L1	3069.0	NM_027976	433256.0	Mm.292056	NM_027976	ENSMUSG00000024981	Acsl5	1700030F05Rik|ACS2|ACS5|Facl5	acyl-CoA synthetase long-chain family member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-55739259-3	chr1	55739125	55739325	+	662.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114663, intron 5 of 5)	intron (NM_001114663, intron 5 of 5)	-192016.0	NR_045837	329159.0	Mm.98697	NR_045837	ENSMUSG00000099950	9130227L01Rik	-	RIKEN cDNA 9130227L01 gene	ncRNA	-1.13146769101922	-1.10460487238646	-1.11735372523027	-1.12713099301154	-1.13082009585647	-0.300663969208598	-1.11446766439333	-1.12595147812057	3.06518455575839	0.353555291099784	1
Merged-chr4-149106333-1	chr4	149106233	149106433	+	586.0	f1_c57bl6.idr	intron (NM_001025296, intron 2 of 5)	intron (NM_001025296, intron 2 of 5)	2191.0	NM_001025296	13347.0	Mm.41433	NM_010044	ENSMUSG00000028974	Dffa	A330085O09Rik|DFF35|Dff45|ICAD|ICAD-L|ICAD-S	DNA fragmentation factor, alpha subunit	protein-coding	0.0365478330689393	-0.195331929476198	-0.199255047180035	0.290087757300689	0.144931642026758	-0.0129494480109042	-0.198391764295703	-0.201741019074958	-0.55121159055601	0.808744314736657	1
Merged-chr17-44814846-2	chr17	44814746	44814946	+	621.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_073392)	promoter-TSS (NR_073392)	-49.0	NR_073392	12393.0	Mm.391013	NM_009820	ENSMUSG00000039153	Runx2	AML3|Cbf|Cbfa-1|Cbfa1|LS3|Osf2|PEBP2aA|Pebp2a1|Pebpa2a	runt related transcription factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-21240184-2	chr11	21240084	21240284	+	651.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290628, intron 1 of 22)	intron (NM_001290628, intron 1 of 22)	1152.0	NM_001290628	245944.0	Mm.170103	NM_139061	ENSMUSG00000020128	Vps54	Hcc8|Vps54l|mSLP8|wr	VPS54 GARP complex subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-67236489-2	chr7	67236389	67236589	+	619.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357324, intron 11 of 11)	intron (NM_001357324, intron 11 of 11)	13873.0	NM_001191051	75099.0	Mm.121691	NM_175215	ENSMUSG00000043831	Lysmd4	4930506D23Rik	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115477434-6	chr11	115477201	115477401	+	889.361084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177778, intron 2 of 2)	B4A|SINE|B4	1634.0	NM_001361594	276905.0	Mm.38019	NM_177778	ENSMUSG00000057219	Armc7	A630084C13|BC023126	armadillo repeat containing 7	protein-coding	0.183994768825583	-0.0759253924020154	-0.0814905332712487	-0.0857943770947804	-0.0918923291726947	0.678831211879195	-0.0802618466385153	0.471831689002312	2.43789998812691	0.291306692036795	1
Merged-chr1-161071532-4	chr1	161071499	161071699	+	928.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172644)	promoter-TSS (NM_172644)	832.0	NR_131029	70454.0	Mm.248212	NM_027429	ENSMUSG00000026708	Cenpl	2610300B10Rik|AW121806|AW550697|CENP-L	centromere protein L	protein-coding	1.85192931731086	1.16399998833995	2.56526104089518	2.25607491412435	1.86784825067979	1.81837427234399	1.90318609606833	1.12258685821268	-0.946200583412414	0.390751219376706	0.880033749858914
Merged-chr13-37964770-4	chr13	37964637	37964837	+	920.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29471.0	NM_025965	107513.0	Mm.426670	NM_025965	ENSMUSG00000021427	Ssr1	2510001K09Rik|6330400D04|AI159733|AI452176|SSR|TRAPA	signal sequence receptor, alpha	protein-coding	2.24554542164268	2.37852767666147	3.10960988994457	2.59730798538833	3.02513353727624	2.89244894925243	1.48618381114364	2.50135589396878	-0.0384069699923719	0.963139560418828	0.998431161219273
Merged-chr18-60214428-7	chr18	60214196	60214396	+	891.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033767, intron 2 of 2)	intron (NM_001033767, intron 2 of 2)	2219.0	NM_001033767	240327.0	Mm.357104	NM_001033767	ENSMUSG00000073555	Gm4951	EG240327|Ifgga2	predicted gene 4951	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19796949-2	chr7	19796849	19797049	+	555.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023224)	promoter-TSS (NM_023224)	-140.0	NM_023224	80794.0	Mm.81698	NM_023224	ENSMUSG00000040525	Cblc	2310076I21Rik|2310079L19Rik|Cbl3	Casitas B-lineage lymphoma c	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102284403-1	chr12	102284303	102284503	+	769.333313	f0_balb.idr	intron (NM_001161365, intron 1 of 9)	intron (NM_001161365, intron 1 of 9)	762.0	NM_001161365	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-82855229-2	chr18	82855129	82855329	+	744.416626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_125720)	promoter-TSS (NR_125720)	-668.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-28430859-6	chr6	28430748	28430948	+	992.7777710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019569, intron 2 of 6)	MTD|LTR|ERVL-MaLR	2947.0	NM_019569	56223.0	Mm.31708	NM_019569	ENSMUSG00000029707	Fscn3	-	fascin actin-bundling protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-120821177-2	chr6	120821077	120821277	+	652.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007510, intron 1 of 8)	intron (NM_007510, intron 1 of 8)	1521.0	NM_007510	11973.0	Mm.29045	NM_007510	ENSMUSG00000019210	Atp6v1e1	2410029D23Rik|Atp6e|Atp6e2|Atp6v1e|D6Ertd385e|Vma4|p31	ATPase, H+ transporting, lysosomal V1 subunit E1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-51864374-2	chr12	51864274	51864474	+	630.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34838.0	NM_144788	207304.0	Mm.249391	NM_144788	ENSMUSG00000035247	Hectd1	A630086P08Rik|AI844876|b2b327Clo|opm	HECT domain E3 ubiquitin protein ligase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47509582-2	chr17	47509482	47509682	+	892.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081635, intron 1 of 6)	intron (NM_001081635, intron 1 of 6)	4531.0	NM_001081635	12445.0	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-8915748-4	chr4	8915657	8915857	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	164433.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85945101-3	chr12	85945010	85945210	+	927.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347395, intron 28 of 32)	Lx9|LINE|L1	120160.0	NM_001081423	320244.0	Mm.132172	NM_177114	ENSMUSG00000012609	Ttll5	1700048H13Rik|2310009M18Rik|4930556H18Rik|AI428864|D630041K24Rik|R75373|Stamp|mKIAA0998	tubulin tyrosine ligase-like family, member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-42383362-2	chr6	42383262	42383462	+	897.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-10094.0	NM_023580	13835.0	Mm.133330	NM_023580	ENSMUSG00000029859	Epha1	5730453L17Rik|AL033318|Eph|Esk	Eph receptor A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5934848-2	chr19	5934748	5934948	+	557.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	-10032.0	NM_026772	104252.0	Mm.491103	NM_026772	ENSMUSG00000045664	Cdc42ep2	1110008C05Rik|Borg1|Cep2|D19Bwg1013e	CDC42 effector protein (Rho GTPase binding) 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-87110296-1	chr17	87110196	87110396	+	643.0	f0_balb.idr	intron (NM_019654, intron 1 of 2)	intron (NM_019654, intron 1 of 2)	2617.0	NM_019654	56468.0	Mm.126885	NM_019654	ENSMUSG00000037104	Socs5	1810018L08Rik|Cish5|mKIAA0671	suppressor of cytokine signaling 5	protein-coding	0.36832983642286	-0.0969328219486257	-0.102229885988009	0.203945345528337	-0.112113269569759	0.648161422730721	-0.101060933412771	-0.105606779602648	0.214635902116305	0.925754874036104	1
Merged-chr6-134152142-4	chr6	134152032	134152232	+	980.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 3 of 8)	intron (NM_001303102, intron 3 of 8)	116432.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75627540-2	chr11	75627440	75627640	+	673.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008850, exon 12 of 12)	3' UTR (NM_008850, exon 12 of 12)	-3480.0	NM_008916	19062.0	Mm.1458	NM_008916	ENSMUSG00000006127	Inpp5k	C62|Pps|SKIP	inositol polyphosphate 5-phosphatase K	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152573251-4	chr1	152573143	152573343	+	985.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 3 of 17)	intron (NM_016846, intron 3 of 17)	51974.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-62123476-2	chr15	62123376	62123576	+	685.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_132746, intron 2 of 6)	intron (NR_132746, intron 2 of 6)	84219.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115092870-2	chr5	115092770	115092970	+	694.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_029012, intron 8 of 10)	intron (NM_029012, intron 8 of 10)	15092.0	NM_001271591	100502825.0	Mm.361657	NM_001271590		Rpl37rt	EyeLinc4|Gm13826	ribosomal protein L37, retrotransposed	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-112898143-2	chr12	112898043	112898243	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22398.0	NR_105906	102465567.0		NR_105906	ENSMUSG00000098338	Mir6941	Gm27923|mmu-mir-6941	microRNA 6941	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-83692042-2	chr17	83691942	83692142	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14121.0	NM_001171054	116871.0	Mm.277668	NM_054082	ENSMUSG00000055817	Mta3	1110002J22Rik|mKIAA1266	metastasis associated 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-54720019-2	chr6	54719919	54720119	+	634.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38395.0	NM_001289740	68235.0	Mm.233860	NM_026629	ENSMUSG00000038065	Mturn	2410066E13Rik|AI448550|B230212L03Rik	maturin, neural progenitor differentiation regulator homolog (Xenopus)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-133527810-2	chr3	133527710	133527910	+	564.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001040400, intron 1 of 10)	B1_Mur2|SINE|Alu	16580.0	NM_001040400	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-68053097-3	chr15	68053008	68053208	+	905.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	205748.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-107317906-4	chr11	107317790	107317990	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 4 of 9)	intron (NR_153311, intron 4 of 9)	-128509.0	NM_001161329	68979.0	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-13378050-2	chr16	13377950	13378150	+	575.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153588, intron 1 of 14)	B1F|SINE|Alu	19629.0	NM_153588	239719.0	Mm.270643	NM_153588	ENSMUSG00000009569	Mkl2	Gt4-1|MRTF-B|Mrtfb|mKIAA1243	MKL/myocardin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-40414589-4	chr9	40414558	40414758	+	998.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357617, intron 1 of 20)	RLTR16C_MM|LTR|ERVK	-38241.0	NM_001357621	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	3.95303914286206	3.39242049980009	4.49868416329657	3.59327097568507	3.50611168377182	3.06683049744771	2.82044252582702	2.72619774186332	-1.30627205784043	0.0213593884516957	0.187240581570953
Merged-chr4-147418413-2	chr4	147418313	147418513	+	951.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039209, intron 1 of 2)	intron (NM_001039209, intron 1 of 2)	-134864.0	NM_001014397	433804.0	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154	zinc finger protein 985	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-18625028-6	chr3	18624971	18625171	+	974.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-144594.0	NR_040544	73959.0	Mm.60616	NR_040544	ENSMUSG00000102699	4930433B08Rik	-	RIKEN cDNA 4930433B08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55386972-3	chr14	55386879	55387079	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-91779.0	NM_001037938	28200.0	Mm.27427	NM_030686	ENSMUSG00000022210	Dhrs4	AI043103|AI790593|CR|D14Ucla2|NDRD|PHCR|PSCD|RRD|mouNRDR	dehydrogenase/reductase (SDR family) member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-78151017-2	chr10	78150917	78151117	+	736.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18751.0	NM_138601	28295.0	Mm.268691	NM_138601	ENSMUSG00000053329	D10Jhu81e	C21orf33|ES1	DNA segment, Chr 10, Johns Hopkins University 81 expressed	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-109458217-2	chr4	109458117	109458317	+	820.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_013876, intron 1 of 2)	intron (NM_013876, intron 1 of 2)	18288.0	NM_013876	29864.0	Mm.392580	NM_013876	ENSMUSG00000028557	Rnf11	-	ring finger protein 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-142929311-4	chr5	142929239	142929439	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-22585.0	NM_007393	11461.0	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-109057670-4	chr9	109057566	109057766	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011637)	TTS (NM_011637)	1585.0	NM_001012236	22040.0	Mm.439964	NM_011637	ENSMUSG00000049734	Trex1	AU041952	three prime repair exonuclease 1	protein-coding	3.80617398820253	3.12534196363175	3.49257173751132	2.16922797395688	3.96669027589336	3.63716441976913	3.04139204841261	3.24656818215515	0.373515798110853	0.550557499139198	0.958882219733107
Merged-chr3-90251066-4	chr3	90250900	90251100	+	921.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013901, intron 3 of 3)	B1F|SINE|Alu	2808.0	NM_013901	30791.0	Mm.294709	NM_013901	ENSMUSG00000052310	Slc39a1	Zip1|Zirtl	solute carrier family 39 (zinc transporter), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-119386456-4	chr12	119386357	119386557	+	988.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56953.0	NM_001163136	238455.0	Mm.31376	NM_001163136	ENSMUSG00000041886	Macc1	4732474O15Rik|Gm267	metastasis associated in colon cancer 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19459846-2	chr7	19459746	19459946	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1352.0	NM_172279	232944.0	Mm.260504	NM_172279	ENSMUSG00000030397	Mark4	2410090P21Rik|C79806|Markl1	MAP/microtubule affinity regulating kinase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-96976138-2	chr11	96976038	96976238	+	862.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030220, intron 1 of 6)	intron (NM_030220, intron 1 of 6)	1550.0	NM_030220	78912.0	Mm.491183	NM_030220	ENSMUSG00000018678	Sp2	4930480I16Rik|mKIAA0048	Sp2 transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-9500900-1	chr3	9500800	9501000	+	640.0	f0_balb.idr	intron (NM_133218, intron 2 of 8)	intron (NM_133218, intron 2 of 8)	97822.0	NR_015499	320088.0	Mm.212908	NR_015499	ENSMUSG00000097365	C030034L19Rik	A130044O20Rik	RIKEN cDNA C030034L19 gene	ncRNA	-0.723846613167693	-0.236523553670226	-0.717614941212578	-0.561171436361083	-0.723270286528476	-0.713869780689752	-0.716942188268015	-0.421909933151057	-1.11977474534564	0.687669952934154	1
Merged-chr6-72382710-3	chr6	72382614	72382814	+	892.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-2246.0	NM_016872	53620.0	Mm.440321	NM_016872	ENSMUSG00000073002	Vamp5	AF119384|Camp	vesicle-associated membrane protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141001929-2	chr4	141001829	141002029	+	629.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_029097, exon 16 of 29)	exon (NM_029097, exon 16 of 29)	-8495.0	NM_001161799	17150.0	Mm.7386	NM_008546	ENSMUSG00000060572	Mfap2	AI893631|Magp|Magp1	microfibrillar-associated protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116594972-2	chr11	116594872	116595072	+	676.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_033223, intron 1 of 4)	A-rich|Low_complexity|Low_complexity	1285.0	NM_009591	11298.0	Mm.42233	NM_009591	ENSMUSG00000020804	Aanat	AA-NAT|Nat-2|Nat4|Snat	arylalkylamine N-acetyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-34758730-4	chr18	34758647	34758847	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175104)	promoter-TSS (NM_175104)	-103.0	NM_175104	66306.0	Mm.29424	NM_175104	ENSMUSG00000034300	Fam53c	2810012G03Rik|Gm21179	family with sequence similarity 53, member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91527256-4	chr16	91527139	91527339	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_105786)	TTS (NR_105786)	305.0	NR_105786	102465190.0		NR_105786	ENSMUSG00000099308	Mir6367	Gm27467|mmu-mir-6367	microRNA 6367	ncRNA	3.91500669253125	4.31028867744211	4.2876054885623	4.42037968863474	4.19948504410816	4.79661998688844	4.00936790805946	3.28244238590363	-0.0944406682170284	0.836681447245691	0.998431161219273
Merged-chr15-88127924-1	chr15	88127824	88128024	+	952.0	f1_balb.idr	Intergenic	Intergenic	-186950.0	NR_045281	328579.0	Mm.146839	NR_045281	ENSMUSG00000116331	B230214G05Rik	B230214G05	RIKEN cDNA B230214G05 gene	ncRNA	1.16756201560286	1.10982397694383	0.720258684513119	0.687446827590959	3.19194485150833	0.768751641899077	3.39091430736499	1.01629295274786	4.08588911417981	0.00216775655707454	0.0353647179852401
Merged-chr11-103199105-2	chr11	103199005	103199205	+	879.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001077698)	TTS (NM_001077698)	9443.0	NM_001254724	69441.0	Mm.380648	NM_027082	ENSMUSG00000020940	1700023F06Rik	-	RIKEN cDNA 1700023F06 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70793029-3	chr8	70792946	70793146	+	965.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199308)	promoter-TSS (NM_199308)	-613.0	NM_199308	546071.0	Mm.250731	NM_199308	ENSMUSG00000031833	Mast3	BC024265|mKIAA0561	microtubule associated serine/threonine kinase 3	protein-coding	0.531061916279448	0.404657311923062	0.73643116342638	0.390581930889942	0.782600580573654	0.40643903423228	1.19901569005192	0.952465256836667	2.1431626247974	0.218313189101988	1
Merged-chr19-17136975-5	chr19	17136848	17137048	+	758.099976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181348, intron 9 of 19)	intron (NM_181348, intron 9 of 19)	180830.0	NM_181348	353211.0	Mm.257354	NM_181348	ENSMUSG00000039126	Prune2	6330414G02Rik|A230083H22Rik|A330102H22Rik|Bmcc1|mKIAA0367	prune homolog 2	protein-coding	-0.499412847928675	-0.412247947923779	-0.72502324233389	-0.726860402478589	-0.603497978697099	-0.722072677622117	-0.566773430378133	-0.726540602788814	-1.00467425259882	0.703019500072551	1
Merged-chr15-6571761-2	chr15	6571661	6571861	+	932.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8086.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-95677719-4	chr10	95677612	95677812	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger12|DNA|TcMar-Tigger	-113566.0	NM_001358996	71207.0	Mm.24397	NM_027722	ENSMUSG00000020029	Nudt4	4933436C10Rik|DIPP-2|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P	nudix (nucleoside diphosphate linked moiety X)-type motif 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5422367-2	chr19	5422269	5422469	+	651.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_024176)	TTS (NM_024176)	2610.0	NM_024176	66556.0	Mm.275446	NM_024176	ENSMUSG00000024914	Drap1	2310074H19Rik|NC2-alpha	Dr1 associated protein 1 (negative cofactor 2 alpha)	protein-coding	-1.58994551673671	-1.55912852307891	-1.56844783632235	-1.57610299769523	-1.18549093183599	-1.55710898902261	-1.56633814807757	-1.57473272746952	1.78703309985663	0.610309988231842	1
Merged-chr2-119359670-2	chr2	119359599	119359799	+	772.666626	f0_balb.idr|f1_balb.idr	Intergenic	B1_Mus2|SINE|Alu	8457.0	NM_026929	69065.0	Mm.35083	NM_026929	ENSMUSG00000027313	Chac1	1810008K03Rik	ChaC, cation transport regulator 1	protein-coding	2.5291063312674	2.38992938290266	2.47323586824014	3.07841807960138	4.01078708851971	3.10498144107361	2.89285158873244	3.00464359257035	1.22686824915353	0.0704835684883044	0.399407707654592
Merged-chr2-181890204-3	chr2	181890082	181890282	+	890.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	25822.0	NM_025901	67005.0	Mm.271986	NM_025901	ENSMUSG00000038628	Polr3k	12.3kDa|1500004O14Rik|AI196849|AU014893|C11|RPC10|RPC11	polymerase (RNA) III (DNA directed) polypeptide K	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81174629-2	chr10	81174529	81174729	+	794.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2002.0	NM_007907	13629.0	Mm.2903	NM_007907	ENSMUSG00000034994	Eef2	Ef-2	eukaryotic translation elongation factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-31032543-1	chr7	31032443	31032643	+	991.0	f1_c57bl6.idr	TTS (NM_001111073)	TTS (NM_001111073)	7774.0	NR_106017	102465635.0		NR_106017	ENSMUSG00000098783	Mir7050	Gm27578|mmu-mir-7050	microRNA 7050	ncRNA	1.32715489509033	0.666229010869933	1.14502673354128	1.32460874978488	0.933832514358137	0.668548975382891	0.658169264057307	1.33310769220144	-0.951912211110966	0.536147393867746	0.953323426463389
Merged-chr7-68209177-2	chr7	68209077	68209277	+	700.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010513, intron 17 of 20)	intron (NM_010513, intron 17 of 20)	55056.0	NM_030101	78444.0	Mm.425468	NM_030101	ENSMUSG00000030553	Pgpep1l	C330024D12Rik	pyroglutamyl-peptidase I-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-145675092-2	chr2	145674992	145675192	+	693.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-26103.0	NR_033220	408057.0	Mm.486711	NR_033220	ENSMUSG00000087594	BC039771	-	cDNA sequence BC039771	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-9087099-4	chr5	9086988	9087188	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13649.0	NM_001081029	652925.0	Mm.439954	NM_001081029	ENSMUSG00000079659	Tmem243	4930420K17Rik|E030031F02Rik	transmembrane protein 243, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-46573045-4	chr18	46572947	46573147	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173394, intron 1 of 2)	L2|LINE|L2	1486.0	NM_173394	225471.0	Mm.149280	NM_173394	ENSMUSG00000056130	Ticam2	B430113A10|TICAM-2|TRAM|Tirp|Trif	toll-like receptor adaptor molecule 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-157138307-7	chr2	157138223	157138423	+	960.714294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3101.0	NM_018851	56045.0	Mm.248478	NM_018851	ENSMUSG00000027639	Samhd1	E330031J07Rik|Mg11	SAM domain and HD domain, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-35755713-3	chr16	35755573	35755773	+	818.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153550, intron 1 of 8)	intron (NM_153550, intron 1 of 8)	13683.0	NM_153550	224132.0	Mm.24094	NM_153550	ENSMUSG00000022848	Dirc2	RCC4	disrupted in renal carcinoma 2 (human)	protein-coding	0.97036491872294	1.24884598337675	0.68878559623863	1.38538246583086	1.62729071189912	1.25982041809903	0.691366898459738	0.681295077704992	0.169702400940302	0.910891245991879	0.998431161219273
Merged-chr17-28015584-4	chr17	28015460	28015660	+	991.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181413, intron 12 of 24)	intron (NM_181413, intron 12 of 24)	65024.0	NM_001357681	21463.0	Mm.29758	NM_013687	ENSMUSG00000062859	Tcp11	D17Ken1|Tcp-11	t-complex protein 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-125349947-3	chr5	125349876	125350076	+	735.916687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8882.0	NM_001205083	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	0.262810446747075	-0.203090856963163	0.565071033905315	-0.211804786392093	-0.217176710939987	-0.201983264397374	-0.206922733403954	-0.0408088644568258	-2.9525771288661	0.212249672961742	1
Merged-chr8-41011014-2	chr8	41010913	41011113	+	813.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001005863, intron 7 of 13)	intron (NM_001005863, intron 7 of 13)	-6455.0	NR_015457	78849.0	Mm.440930	NR_015457	ENSMUSG00000084960	B430010I23Rik	-	RIKEN cDNA B430010I23 gene	ncRNA	2.4657523525548	2.26771451646547	2.41131039387313	2.59981937884461	2.03692415508373	2.14822316934908	1.30449380992224	1.51305929540736	-1.63445963342715	0.0820141581528467	0.437854881126307
Merged-chr11-83273336-2	chr11	83273236	83273436	+	553.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	13390.0	NM_001166028	237890.0	Mm.297670	NM_001166028	ENSMUSG00000082101	Slfn14	Gm20|Slfn14-ps	schlafen 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-103026287-2	chr11	103026187	103026387	+	722.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2256.0	NM_008707	18107.0	Mm.10265	NM_008707	ENSMUSG00000020936	Nmt1	AW536594	N-myristoyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-73485603-4	chr2	73485510	73485710	+	993.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	143.0	NM_001289723	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-115380993-4	chr6	115380890	115381090	+	851.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001308354, intron 1 of 7)	intron (NM_001308354, intron 1 of 7)	18641.0	NM_001308354	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-68284929-2	chr10	68284829	68285029	+	699.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6203.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-89340219-3	chr6	89340128	89340328	+	828.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008881, intron 9 of 31)	intron (NM_008881, intron 9 of 31)	22385.0	NM_008881	18844.0	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115617993-2	chr5	115617893	115618093	+	795.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172719, intron 53 of 57)	intron (NM_172719, intron 53 of 57)	13823.0	NR_027810	66123.0	Mm.133063	NM_021417	ENSMUSG00000107121	1110006O24Rik	-	RIKEN cDNA 1110006O24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-80818600-3	chr12	80818502	80818702	+	805.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001242419, intron 1 of 6)	MIRb|SINE|MIR	28070.0	NM_001242419	217684.0	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-18317351-2	chr11	18317204	18317404	+	870.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	221318.0	NR_131129	327872.0		NR_131129	ENSMUSG00000085453	Gm12018	-	predicted gene 12018	ncRNA	0.312293331135883	0.332878567541331	0.990967155018957	0.744283654563695	0.459223172232587	0.692419979147527	0.327625472226976	0.750281260366089	-0.398095425960877	0.824029559305703	1
Merged-chr7-123278535-2	chr7	123278435	123278635	+	566.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001122643)	TTS (NM_001122643)	63669.0	NM_146198	233836.0	Mm.211838	NM_146198	ENSMUSG00000030769	Slc5a11	2010013B02Rik|Kst1|RKST2|SMIT2|Slc5a10	solute carrier family 5 (sodium/glucose cotransporter), member 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-119829483-2	chr8	119829383	119829583	+	824.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028071, intron 2 of 3)	intron (NM_028071, intron 2 of 3)	11096.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-50449305-4	chr16	50449210	50449410	+	942.30835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-16844.0	NM_001347240	70508.0	Mm.28940	NM_027444	ENSMUSG00000022641	Bbx	5530401J07Rik|5730403O13Rik	bobby sox HMG box containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-3488344-3	chr6	3488241	3488441	+	733.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178899, intron 1 of 9)	intron (NM_178899, intron 1 of 9)	6157.0	NM_178899	101202.0	Mm.206911	NM_178899	ENSMUSG00000044156	Hepacam2	AI987662	HEPACAM family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-7076379-4	chr10	7076297	7076497	+	815.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53212.0	NM_001033391	320495.0	Mm.331674	NM_001033391	ENSMUSG00000064065	Ipcef1	A130090K04Rik	interaction protein for cytohesin exchange factors 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-29522410-4	chr7	29522314	29522514	+	824.94165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16954.0	NM_001081028	74206.0	Mm.447042	NM_001081028	ENSMUSG00000030583	Sipa1l3	2610511M17Rik	signal-induced proliferation-associated 1 like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-79228656-6	chr3	79228590	79228790	+	850.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045502, intron 1 of 2)	intron (NR_045502, intron 1 of 2)	15771.0	NR_045502	70924.0	Mm.444622	NR_045502	ENSMUSG00000104585	4921511C10Rik	-	RIKEN cDNA 4921511C10 gene	ncRNA	-0.71583727841598	-0.705533130823944	-0.0348529099330024	-0.545345407793263	-0.567524592516865	-0.704770836459685	-0.708167650510216	-0.711062816082432	-2.33576944809985	0.388588971169131	1
Merged-chr7-126675916-2	chr7	126675816	126676016	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133670, intron 1 of 7)	intron (NM_133670, intron 1 of 7)	502.0	NM_133670	20887.0	Mm.368982	NM_133670	ENSMUSG00000030711	Sult1a1	AI266890|PST|ST1A1|ST1A4|Stp|Stp1|mSTp1	sulfotransferase family 1A, phenol-preferring, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-64303771-2	chr1	64303671	64303871	+	650.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	-182382.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-130878685-4	chr4	130878571	130878771	+	956.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34663.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-73384364-4	chr14	73384247	73384447	+	866.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008410, intron 1 of 5)	intron (NM_008410, intron 1 of 5)	942.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-4190826-4	chr11	4190701	4190901	+	988.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134023, intron 1 of 8)	intron (NM_134023, intron 1 of 8)	3968.0	NM_134023	103724.0	Mm.28140	NM_134023	ENSMUSG00000034412	Tbc1d10a	AI447804|EPI64|Tbc1d10|mFLJ00288	TBC1 domain family, member 10a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-8805997-4	chr5	8805881	8806081	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011075, intron 3 of 27)	intron (NM_011075, intron 3 of 27)	-7458.0	NR_152132	330031.0	Mm.389059	NR_152132		Gm5106	A230021K14|EG330031	predicted gene 5106	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34137139-1	chr17	34137039	34137239	+	546.0	f1_c57bl6.idr	exon (NM_010386, exon 3 of 6)	exon (NM_010386, exon 3 of 6)	-8277.0	NM_010388	15000.0	Mm.195060	NM_010388	ENSMUSG00000037548	H2-DMb2	H-2Mb2|H2-Mb2	histocompatibility 2, class II, locus Mb2	protein-coding	0.46581415900602	0.00260680568613422	0.769282843138574	-0.00740169995624523	0.376090522105914	0.00387831092831842	-0.00179320847317146	-0.00663917305063244	-1.87989423223398	0.40414582438169	1
Merged-chr10-71356329-4	chr10	71356200	71356400	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027184, intron 1 of 5)	L1MC4|LINE|L1	8537.0	NM_027184	69718.0	Mm.245867	NM_027184	ENSMUSG00000060733	Ipmk	2410017C19Rik|AA408208|Impk	inositol polyphosphate multikinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-153415171-4	chr1	153415075	153415275	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033736)	promoter-TSS (NR_033736)	-942.0	NR_033736	626058.0	Mm.31556	NM_001177359		E330020D12Rik	EG626058|F430003O07Rik|Gm6648	Riken cDNA E330020D12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-116507584-4	chr4	116507539	116507739	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008389)	promoter-TSS (NM_008389)	90.0	NM_008389	16351.0	Mm.1350	NM_008389	ENSMUSG00000028696	Ipp	D4Jhu8|Mipp	IAP promoted placental gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-64880836-1	chr8	64880736	64880936	+	545.0	f0_c57.idr	Intergenic	Intergenic	-30912.0	NM_178633	77113.0	Mm.350347	NM_178633	ENSMUSG00000031605	Klhl2	6030411N21Rik|8530402H02Rik|ABP-KELCH|AU020744|Mav	kelch-like 2, Mayven	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-21356644-2	chr5	21356544	21356744	+	639.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029195, intron 2 of 18)	intron (NM_029195, intron 2 of 18)	-16029.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5804498-2	chr19	5804398	5804598	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1826.0	NR_002847	72289.0	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-42897321-4	chr16	42897222	42897422	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040402, intron 1 of 3)	intron (NR_040402, intron 1 of 3)	-10323.0	NM_001285805	56490.0	Mm.136238	NM_019778	ENSMUSG00000022708	Zbtb20	1300017A20Rik|7330412A13Rik|A930017C21Rik|D16Wsu73e|DPZF|HOF|J20|ODA-8S|Oda8|Tg(PDGFB-APPSwInd)20Lms|Zfp288	zinc finger and BTB domain containing 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-102745073-2	chr13	102744974	102745174	+	876.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175171, intron 26 of 28)	intron (NM_175171, intron 26 of 28)	-15181.0	NR_130318	76624.0	Mm.426384	NR_130171	ENSMUSG00000091906	1700099I09Rik	-	RIKEN cDNA 1700099I09 gene	ncRNA	-0.778881154338917	-0.768736116537426	-0.772061227721561	-0.774625764150184	-0.778248303795029	-0.398771883972855	-0.181510069992422	-0.7741778057221	3.2164906748404	0.268346100923086	1
Merged-chr2-118246154-1	chr2	118246054	118246254	+	618.0	f1_c57bl6.idr	intron (NM_027759, intron 5 of 10)	intron (NM_027759, intron 5 of 10)	10812.0	NM_027759	71313.0	Mm.85046	NM_027759	ENSMUSG00000027344	Fsip1	1700012M13Rik|4933432K11Rik	fibrous sheath-interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-75521504-4	chr1	75521420	75521620	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027886)	promoter-TSS (NM_027886)	-9.0	NM_027886	71728.0	Mm.312650	NM_027886	ENSMUSG00000026213	Stk11ip	1200014D22Rik|BB131189|LIP1|LKB1IP	serine/threonine kinase 11 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-66086843-2	chr5	66086743	66086943	+	632.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_139065, intron 2 of 6)	PB1D11|SINE|Alu	11336.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33892186-4	chr16	33892096	33892296	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 5 of 14)	intron (NM_001145884, intron 5 of 14)	62531.0	NM_001145884	16419.0	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-9990947-2	chr19	9990845	9991045	+	614.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011913, intron 6 of 11)	RMER17C|LTR|ERVK	8299.0	NM_010239	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	-1.8418762459921	-1.8125357239735	-1.82140854000656	-1.82869693527674	-1.56059678980999	-1.8106129477253	-1.81939992894326	-1.82739231600805	1.3620893379502	0.699511506488145	1
Merged-chr3-146501793-2	chr3	146501693	146501893	+	750.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_010318, intron 1 of 2)	intron (NM_010318, intron 1 of 2)	1957.0	NM_010318	14707.0	Mm.140804	NM_010318	ENSMUSG00000068523	Gng5	G(y)5	guanine nucleotide binding protein (G protein), gamma 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-63239985-4	chr13	63239889	63240089	+	994.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_110521)	promoter-TSS (NR_110521)	-40.0	NR_110520	72061.0	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	0.13871430278433	-0.0744692858293351	0.0710800264640601	0.176682289897891	0.144402183136092	-0.073674971256627	0.316712776993422	-0.0801697891026003	0.0915828994818262	0.964736429330104	1
Merged-chr6-71494862-2	chr6	71494762	71494962	+	644.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_009543, exon 1 of 4)	exon (NM_009543, exon 1 of 4)	985.0	NM_001308303	22644.0	Mm.422969	NM_009543	ENSMUSG00000052656	Rnf103	AW146237|AW212918|Zfp103|kf-1	ring finger protein 103	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-106675386-3	chr8	106675224	106675424	+	741.305542	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7744.0	NM_173037	272538.0	Mm.87151	NM_173037	ENSMUSG00000041949	Tango6	AW413431|E330010G16|Tmco7	transport and golgi organization 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-29052472-2	chr2	29052372	29052572	+	857.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166705, intron 1 of 5)	intron (NM_001166705, intron 1 of 5)	2594.0	NM_001166705	329375.0	Mm.425079	NM_001085514	ENSMUSG00000079502	Cfap77	1700101E01Rik|Gm823	cilia and flagella associated protein 77	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-137755470-2	chr5	137755370	137755570	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023910, intron 3 of 4)	intron (NM_023910, intron 3 of 4)	9501.0	NM_029805	78829.0	Mm.286399	NM_023910	ENSMUSG00000029723	Tsc22d4	0610009M14Rik|1700023B23Rik|AI415410|Thg-1pit|Tilz2	TSC22 domain family, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-61518798-2	chr8	61518698	61518898	+	619.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001293772, intron 18 of 21)	B1_Mur1|SINE|Alu	31064.0	NM_145595	234309.0	Mm.29059	NM_145595	ENSMUSG00000031641	Cbr4	A730083J17Rik|BC009118	carbonyl reductase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123394626-4	chr5	123394522	123394722	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177582)	promoter-TSS (NM_177582)	-176.0	NM_133917	208104.0	Mm.83277	NM_133917	ENSMUSG00000038342	Mlxip	AW228700|Mir|bHLHe36	MLX interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131181803-4	chr1	131181724	131181924	+	695.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018750, intron 3 of 5)	intron (NM_018750, intron 3 of 5)	18361.0	NM_001311094	54354.0	Mm.248291	NM_018750	ENSMUSG00000026430	Rassf5	1300019G20Rik|Maxp1|Nore1|Nore1A|Nore1B|Rapl	Ras association (RalGDS/AF-6) domain family member 5	protein-coding	1.06605736361799	0.316715994586041	0.308458384013096	0.634585060360949	1.22233159335079	0.318567908287257	0.507869894584562	0.303163208427375	0.175761810428539	0.925357895991205	1
Merged-chr7-4964469-4	chr7	4964367	4964567	+	837.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146329)	promoter-TSS (NM_001146329)	-119.0	NM_001146329	381836.0	Mm.297829	NM_001146329	ENSMUSG00000030433	Sbk2	Gm1079|Sgk069	SH3-binding domain kinase family, member 2	protein-coding	1.44923538453883	0.545501885451722	0.898258264455009	0.867688738753858	1.39631373852352	0.547788887988125	0.537548401252662	0.716233323985793	-0.546568414580313	0.736357659987388	0.998431161219273
Merged-chr14-14098777-4	chr14	14098687	14098887	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139227, intron 10 of 11)	intron (NM_139227, intron 10 of 11)	22117.0	NM_025550	66413.0	Mm.27591	NM_025550	ENSMUSG00000021737	Psmd6	2400006A19Rik	proteasome (prosome, macropain) 26S subunit, non-ATPase, 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-51931964-4	chr11	51931859	51932059	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-35672.0	NM_029976	52626.0	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-55416606-1	chr13	55416506	55416706	+	683.0	f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-1374.0	NM_029303	75477.0	Mm.432537	NM_029303	ENSMUSG00000044444	Pfn3	1700012P12Rik	profilin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-124703551-4	chr2	124703470	124703670	+	979.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	49989.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90460158-2	chr2	90460058	90460258	+	941.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 8 of 23)	intron (NM_008982, intron 8 of 23)	19016.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-11442743-3	chr16	11442637	11442837	+	774.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028964, intron 11 of 20)	ORR1B1|LTR|ERVL-MaLR	37089.0	NM_001290148	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-50359742-1	chr11	50359642	50359842	+	674.5	f0_balb.idr	Intergenic	CpG	-1863.0	NR_030529	100049547.0		NR_030529	ENSMUSG00000076450	Mir804	Mirn804|mmu-mir-804	microRNA 804	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-52419565-4	chr10	52419470	52419670	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030250, intron 1 of 4)	intron (NM_030250, intron 1 of 4)	2023.0	NM_030250	52014.0	Mm.199964	NM_030250	ENSMUSG00000023068	Nus1	1600027K07Rik|AU019165|AW538011|BC003223|D10Ertd438e	NUS1 dehydrodolichyl diphosphate synthase subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-84764968-2	chr12	84764868	84765068	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023409, intron 2 of 3)	intron (NM_023409, intron 2 of 3)	8144.0	NM_023409	67963.0	Mm.282556	NM_023409	ENSMUSG00000021242	Npc2	2700012J19Rik|AA408070|AU045843|HE1	NPC intracellular cholesterol transporter 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-69918529-2	chr8	69918429	69918629	+	688.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286450, intron 3 of 12)	intron (NM_001286450, intron 3 of 12)	-15971.0	NM_023312	67184.0	Mm.21162	NM_023312	ENSMUSG00000036199	Ndufa13	2700054G14Rik|AU022060|CDA016|CGI-39|GRIM-19|Grim19	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 13	protein-coding	0.733409481475249	0.377218447213345	0.3701144516375	0.899783608573961	1.01191155284111	0.37881857573424	0.371682079211835	0.906862522540436	0.503002272149678	0.786340078924819	1
Merged-chr4-133619945-2	chr4	133619845	133620045	+	824.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001017968, intron 2 of 7)	intron (NM_001017968, intron 2 of 7)	13484.0	NM_001017968	503610.0	Mm.331948	NM_001017968	ENSMUSG00000037553	Zdhhc18	-	zinc finger, DHHC domain containing 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-98612115-4	chr10	98611954	98612154	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-260187.0	NR_045179	667438.0	Mm.414522	NR_045179	ENSMUSG00000112896	Gm8633	EG667438	predicted gene 8633	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-84015808-1	chr3	84015708	84015908	+	582.0	f0_balb.idr	intron (NM_172681, intron 3 of 34)	intron (NM_172681, intron 3 of 34)	24353.0	NM_172681	229473.0	Mm.28838	NM_172681	ENSMUSG00000033767	Tmem131l	D930015E06Rik|Kiaa0922|mKIAA0922	transmembrane 131 like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-125601924-4	chr7	125601836	125602036	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1493.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	4.69427805492723	4.56907660099755	4.7689395079045	5.45896983864493	4.82998000191534	4.65695000659758	4.61558804590672	4.71072740730528	-0.263660052035231	0.456614059894338	0.919264728457769
Merged-chr1-136658948-2	chr1	136658848	136659048	+	548.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24448.0	NR_045324	100503460.0	Mm.30630	NR_045324	ENSMUSG00000097113	Gm19705	-	predicted gene, 19705	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76904254-7	chr15	76904176	76904376	+	978.5714109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012053, intron 1 of 5)	CpG	205.0	NM_012053	26961.0	Mm.30066	NM_012053	ENSMUSG00000003970	Rpl8	-	ribosomal protein L8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120104871-4	chr8	120104763	120104963	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3391.0	NM_133967	102193.0	Mm.240076	NM_133967	ENSMUSG00000031823	Zdhhc7	AL024087|Gramp2	zinc finger, DHHC domain containing 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85449506-2	chr12	85449406	85449606	+	594.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24384.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-107287419-2	chr3	107287319	107287519	+	557.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4A|LINE|L1	-3811.0	NM_001310705	229699.0	Mm.38384	NM_146136	ENSMUSG00000027896	Slc16a4	AW146050|MCT 5	solute carrier family 16 (monocarboxylic acid transporters), member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-8663033-3	chr11	8662950	8663150	+	555.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 1 of 30)	intron (NM_001083587, intron 1 of 30)	1485.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	1.07819604456787	1.08127672240903	0.704464128587386	1.14069850253475	1.08764470810812	1.36011871546395	0.706631825723504	1.25968372244403	0.547371654666304	0.701731153564934	0.998431161219273
Merged-chr13-114387993-4	chr13	114387866	114388066	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010887, exon 1 of 5)	exon (NM_010887, exon 1 of 5)	128.0	NM_010887	17993.0	Mm.253142	NM_010887	ENSMUSG00000021764	Ndufs4	6720411N02Rik|C1-18k	NADH dehydrogenase (ubiquinone) Fe-S protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90940937-4	chr2	90940801	90941001	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198683, intron 1 of 13)	CpG	504.0	NM_017368	13046.0	Mm.29495	NM_017368	ENSMUSG00000005506	Celf1	1600010O03Rik|AA407467|Brunol2|CUG-BP|CUG-BP1|CUGBP|Cugbp1|D2Wsu101e|HNAB50|NAB50	CUGBP, Elav-like family member 1	protein-coding	3.02425110733341	3.39142997871375	3.18688773994002	3.09712767054704	3.04960048870153	3.73448571024566	3.74678276555125	2.35067253569089	0.255884193535383	0.681878786403841	0.995882295196263
Merged-chr17-65718789-4	chr17	65718675	65718875	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133685, intron 2 of 6)	MTC|LTR|ERVL-MaLR	53977.0	NM_133685	106572.0	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-64789935-3	chr17	64789805	64790005	+	819.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22794.0	NR_105051	101202683.0	Mm.393309	NR_105051		Dreh	-	down-regulated in hepatocellular carcinoma	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-106477153-4	chr9	106477058	106477258	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145620)	promoter-TSS (NM_145620)	-151.0	NM_145620	27966.0	Mm.239997	NM_145620	ENSMUSG00000041506	Rrp9	55kDa|D19435|D9Wsu10e|Rnu3ip2|U3-55k	RRP9, small subunit (SSU) processome component, homolog (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-59224931-3	chr3	59224822	59225022	+	806.43335	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357010, intron 1 of 3)	intron (NM_001357010, intron 1 of 3)	-14040.0	NM_028808	74191.0	Mm.90067	NM_028808	ENSMUSG00000036362	P2ry13	2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174	purinergic receptor P2Y, G-protein coupled 13	protein-coding	3.83677396063777	2.48809040916159	3.88690031159814	3.09032108601829	3.46712497808358	2.83756607142283	2.73971171208951	3.10639749372035	-0.612586568645528	0.336769688447869	0.83703930093451
Merged-chr6-83600072-5	chr6	83599990	83600190	+	793.200012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27586.0	NM_001362080	70527.0	Mm.32801	NM_024239	ENSMUSG00000006906	Stambp	5330424L14Rik|5730422L11Rik|AW107289|Amsh|mKIAA4198	STAM binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-57197537-3	chr19	57197439	57197639	+	615.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290816)	promoter-TSS (NM_001290816)	92.0	NM_001103177	226251.0	Mm.217161	NM_178688	ENSMUSG00000025085	Ablim1	2210411C18Rik|2610209L21Rik|4833406P10Rik|9330196J19Rik|AV079770|AW060987|AW215784|Limab1|mKIAA0059	actin-binding LIM protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89859182-2	chr3	89859082	89859282	+	709.333374	f1_balb.idr|f1_c57bl6.idr	TTS (NM_172530)	TTS (NM_172530)	27812.0	NM_172530	214547.0	Mm.225	NM_172530	ENSMUSG00000046280	She	9430022A14	src homology 2 domain-containing transforming protein E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-77468652-4	chr5	77468557	77468757	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_131050, exon 2 of 2)	non-coding (NR_131050, exon 2 of 2)	3169.0	NR_131050	69370.0	Mm.426881	NR_131050	ENSMUSG00000107232	1700017L05Rik	-	RIKEN cDNA 1700017L05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-83831298-4	chr9	83831187	83831387	+	953.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3402.0	NM_009445	22137.0	Mm.1904	NM_009445	ENSMUSG00000038379	Ttk	AL022661|Esk1|Mps1|PYT|esk	Ttk protein kinase	protein-coding	0.0256410868764093	1.08010542182704	0.252358235901392	0.0362967663188349	0.0272387370815537	0.0525371874024737	0.827895147690896	0.0374068494507179	-0.786271059418572	0.711369988114322	1
Merged-chr10-37338394-4	chr10	37338336	37338536	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-199510.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-156216312-4	chr4	156216199	156216399	+	929.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172417, intron 1 of 3)	intron (NM_172417, intron 1 of 3)	372.0	NM_172417	74183.0	Mm.431343	NM_172417	ENSMUSG00000078486	Perm1	2310042D19Rik	PPARGC1 and ESRR induced regulator, muscle 1	protein-coding	2.3633168420212	1.08331662767752	2.17079280291901	1.03863122246637	2.09243268012853	1.75086552390664	2.18944708176828	1.04214292608057	0.0599909164437477	0.96138241424467	0.998431161219273
Merged-chr1-163926533-4	chr1	163926434	163926634	+	915.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14-int|LTR|ERV1	-2566.0	NM_001286002	240880.0	Mm.389213	NM_028776	ENSMUSG00000026584	Scyl3	1200016D23Rik|6030457O16|AW214499|Pace1	SCY1-like 3 (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5642401-2	chr19	5642301	5642501	+	749.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009045, intron 8 of 10)	B3|SINE|B2	4911.0	NM_009045	19697.0	Mm.249966	NM_009045	ENSMUSG00000024927	Rela	p65	v-rel reticuloendotheliosis viral oncogene homolog A (avian)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-90048919-4	chr7	90048827	90049027	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_110364, exon 6 of 6)	non-coding (NR_110364, exon 6 of 6)	19768.0	NR_110364	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	4.70907845131336	4.43672021687129	4.95380443828731	6.10727091170843	5.59130951691216	4.71411108144819	4.90520596458647	5.9298683581475	0.184269505855616	0.650993938882018	0.985970995710291
Merged-chr7-35032484-2	chr7	35032384	35032584	+	700.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008820, intron 12 of 14)	intron (NM_008820, intron 12 of 14)	24082.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-58774115-4	chr1	58774033	58774233	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21241.0	NM_009812	12370.0	Mm.336851	NM_009812	ENSMUSG00000026029	Casp8	CASP-8|FLICE|MACH|Mch5	caspase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-25565870-2	chr14	25565770	25565970	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 3 of 23)	intron (NM_183208, intron 3 of 23)	-20934.0	NR_033492	77592.0	Mm.444871	NM_175264		4931406H21Rik	-	RIKEN cDNA 4931406H21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-63602561-4	chr9	63602455	63602655	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311098)	promoter-TSS (NM_001311098)	-62.0	NM_001311098	78250.0	Mm.444612	NM_030068	ENSMUSG00000037801	Iqch	4921504K03Rik	IQ motif containing H	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-40583555-2	chr8	40583455	40583655	+	726.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001040699, intron 6 of 13)	intron (NM_001040699, intron 6 of 13)	51237.0	NM_001040699	54384.0	Mm.294871	NM_019433	ENSMUSG00000039431	Mtmr7	-	myotubularin related protein 7	protein-coding	0.0872326678461984	1.57595963778766	0.119622823594616	0.107761145006054	0.090356779648364	1.59518628120279	0.122949050289777	0.109859420747578	0.0396733214969282	0.990365292558046	0.998431161219273
Merged-chr10-13200637-1	chr10	13200537	13200737	+	829.0	f0_balb.idr	Intergenic	Intergenic	-7500.0	NM_181470	353258.0	Mm.117581	NM_181470	ENSMUSG00000019814	Ltv1	2610020N02Rik	LTV1 ribosome biogenesis factor	protein-coding	1.06583918744963	1.47634144914726	2.00490415808367	1.11745286988692	3.11592125676572	2.60920381917398	1.85752950265572	2.76373775711282	3.03345219932568	0.0039078846485804	0.0550797047699106
Merged-chr17-34355181-4	chr17	34355076	34355276	+	902.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_079835, intron 1 of 8)	intron (NM_079835, intron 1 of 8)	354.0	NM_079835	547431.0	Mm.441007	NM_079835	ENSMUSG00000024340	Btnl2	BTL-II|BTLN2|Btl2|Gm315|NG9	butyrophilin-like 2	protein-coding	3.1401969591274	2.79075406093243	1.98077563805002	2.39137526139588	3.04897420547302	2.56578663072588	1.77721566586712	2.91080755270766	0.0276406437368222	0.972543781763458	0.998431161219273
Merged-chr15-83124051-2	chr15	83123951	83124151	+	969.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1250.0	NM_029101	74778.0	Mm.30056	NM_029101	ENSMUSG00000018040	Rrp7a	1110014J01Rik|AA408146|Kheg1	ribosomal RNA processing 7 homolog A (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119206744-2	chr11	119206644	119206844	+	928.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347625, intron 3 of 11)	intron (NM_001347625, intron 3 of 11)	21755.0	NM_001347625	207592.0	Mm.205263	NM_172443	ENSMUSG00000039976	Tbc1d16	B930087K01|BC026530|Tcd1d16	TBC1 domain family, member 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-38355403-3	chr6	38355384	38355584	+	926.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347122)	promoter-TSS (NM_001347122)	-881.0	NM_028864	78781.0	Mm.25243	NM_028421	ENSMUSG00000029826	Zc3hav1	1200014N16Rik|2900058M19Rik|9130009D18Rik|9830115L13Rik|ARTD13|D6Bwg1452e|ZAP	zinc finger CCCH type, antiviral 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25301176-2	chr7	25301076	25301276	+	758.833374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081294)	promoter-TSS (NM_001081294)	-183.0	NM_001081294	623131.0	Mm.172160	NM_001081294	ENSMUSG00000058741	Prr19	EG623131	proline rich 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-158773025-4	chr2	158772928	158773128	+	948.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027975, intron 1 of 3)	intron (NM_027975, intron 1 of 3)	4929.0	NM_027975	71878.0	Mm.85162	NM_027975	ENSMUSG00000027654	Fam83d	2310007D09Rik|BB104611	family with sequence similarity 83, member D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-50430424-8	chr16	50430206	50430406	+	982.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027444, intron 1 of 16)	CpG	2083.0	NM_027444	70508.0	Mm.28940	NM_027444	ENSMUSG00000022641	Bbx	5530401J07Rik|5730403O13Rik	bobby sox HMG box containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-117483073-4	chr5	117482952	117483152	+	941.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001312914, intron 1 of 19)	intron (NM_001312914, intron 1 of 19)	69050.0	NM_001312914	333050.0	Mm.437947	NM_001034873	ENSMUSG00000061578	Ksr2	-	kinase suppressor of ras 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-40748763-2	chr19	40748663	40748863	+	552.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-82516.0	NM_172839	240665.0	Mm.309	NM_172839	ENSMUSG00000025010	Ccnj	D430039C20Rik	cyclin J	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-101159503-1	chr2	101159403	101159603	+	622.5	f0_balb.idr	Intergenic	Intergenic	-465245.0	NM_009020	19374.0	Mm.4988	NM_009020	ENSMUSG00000032864	Rag2	Rag-2	recombination activating gene 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-99224577-2	chr12	99224477	99224677	+	959.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_183186, intron 4 of 5)	RMER10A|LTR|ERVL	-61769.0	NR_038130	67639.0	Mm.87374	NR_038130	ENSMUSG00000113210	4930474N09Rik	-	RIKEN cDNA 4930474N09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-118121251-4	chr10	118121151	118121351	+	966.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20536.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-17405903-4	chr16	17405791	17405991	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023348)	promoter-TSS (NM_023348)	-109.0	NM_023348	67474.0	Mm.271992	NM_023348	ENSMUSG00000022765	Snap29	1300018G05Rik|AI891940|AU020222|BB131856|Gs32	synaptosomal-associated protein 29	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-35903949-2	chr16	35903849	35904049	+	565.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32567.0	NM_001039530	547253.0	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-70822833-2	chr12	70822733	70822933	+	745.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2681.0	NM_028127	319710.0	Mm.2962	NM_028127	ENSMUSG00000048285	Frmd6	2610019M19Rik|4930488L10Rik|AW212977|Willin	FERM domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-142960925-2	chr5	142960825	142961025	+	778.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_007984, exon 1 of 5)	exon (NM_007984, exon 1 of 5)	570.0	NM_007984	14086.0	Mm.289707	NM_007984	ENSMUSG00000029581	Fscn1	AI663989|Fan1|fascin-1	fascin actin-bundling protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-75917852-4	chr16	75917739	75917939	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8573.0	NM_023380	67742.0	Mm.131406	NM_023380	ENSMUSG00000022876	Samsn1	4930571B16Rik|930571B16Rik|Hacs1|SLy2	SAM domain, SH3 domain and nuclear localization signals, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191559968-4	chr1	191559877	191560077	+	787.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305233, intron 8 of 15)	intron (NM_001305233, intron 8 of 15)	15567.0	NM_029766	76843.0	Mm.189102	NM_029766	ENSMUSG00000037474	Dtl	2810047L02Rik|5730564G15Rik|L2dtl|Ramp	denticleless E3 ubiquitin protein ligase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129829937-4	chr4	129829787	129829987	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164745, intron 1 of 5)	intron (NM_001164745, intron 1 of 5)	9179.0	NM_001164745	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	4.32552201144782	4.07031739920451	4.371096568155	3.96287513740302	4.65380828935715	3.65672817260894	4.84653979895189	4.27651155011279	0.317274838228702	0.456557599288623	0.919264728457769
Merged-chr6-54699189-3	chr6	54699083	54699283	+	719.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001289740, exon 3 of 3)	3' UTR (NM_001289740, exon 3 of 3)	17559.0	NM_001289740	68235.0	Mm.233860	NM_026629	ENSMUSG00000038065	Mturn	2410066E13Rik|AI448550|B230212L03Rik	maturin, neural progenitor differentiation regulator homolog (Xenopus)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117157905-4	chr8	117157803	117158003	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081151)	promoter-TSS (NM_001081151)	-232.0	NM_001081151	209239.0	Mm.132992	NM_001081151	ENSMUSG00000052557	Gan	A330045G18|gigaxonin	giant axonal neuropathy	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-32388036-1	chr4	32387936	32388136	+	654.0	f0_balb.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-29399.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	0.630292279743707	0.666182390713155	1.0236856535291	1.12780746082893	1.66403492683	0.668771114498569	1.30445474470339	1.13468160228328	1.65130971169781	0.279011317341276	0.782570111402433
Merged-chr6-51546294-4	chr6	51546217	51546417	+	703.854187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361577, intron 1 of 6)	intron (NM_001361577, intron 1 of 6)	1024.0	NM_001361577	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-67381997-7	chr17	67381832	67382032	+	858.0714109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-27441.0	NM_001357625	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	0.737339944914693	1.16000589121	1.54037543519415	0.583722873713223	1.12592105833556	1.30604860847993	0.595131051269729	0.585282785899292	-0.518994518020728	0.742519705630654	0.998431161219273
Merged-chr10-78187699-2	chr10	78187599	78187799	+	640.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001081055, exon 23 of 23)	3' UTR (NM_001081055, exon 23 of 23)	-2550.0	NM_029546	110816.0	Mm.103522	NM_029546	ENSMUSG00000032834	Pwp2	6530411D08Rik|Pwp2h|wdp103	PWP2 periodic tryptophan protein homolog (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-79627724-1	chr3	79627624	79627824	+	696.0	f0_balb.idr	intron (NM_025794, intron 1 of 12)	intron (NM_025794, intron 1 of 12)	1043.0	NM_025794	66841.0	Mm.28336	NM_025794	ENSMUSG00000027809	Etfdh	0610010I20Rik|AV001013	electron transferring flavoprotein, dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-17058524-4	chr7	17058403	17058603	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162950, intron 1 of 14)	intron (NM_001162950, intron 1 of 14)	-1824.0	NM_016868	53417.0	Mm.135110	NM_016868	ENSMUSG00000004328	Hif3a	Ipas|MOP7|NEPAS|bHLHe17	hypoxia inducible factor 3, alpha subunit	protein-coding	2.55252220104959	2.67309122796656	3.40406219714647	1.77772991964348	2.27708240903304	1.37829683486278	3.05202179070747	1.56690571968359	-0.935720031537527	0.316558892188608	0.819728112621349
Merged-chr16-95932379-4	chr16	95932273	95932473	+	856.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-3296.0	NR_040484	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-6718105-2	chr10	6718005	6718205	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40488.0	NM_001302794	18390.0	Mm.438000	NM_011013	ENSMUSG00000000766	Oprm1	M-OR-1|MOP-R|MOR-1|MOR-1O|Oprm|mor|muOR	opioid receptor, mu 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-16481944-2	chr5	16481844	16482044	+	620.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-71551.0	NM_001289460	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-129234118-4	chr6	129234033	129234233	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040268, intron 2 of 3)	intron (NR_040268, intron 2 of 3)	3912.0	NR_040265	76432.0	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-122739625-3	chr6	122739542	122739742	+	684.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011401, intron 3 of 9)	intron (NM_011401, intron 3 of 9)	3103.0	NM_011401	20527.0	Mm.395108	NM_011401	ENSMUSG00000003153	Slc2a3	AA408729|AL023014|AL024341|AU040424|C78366|Glut-3|Glut3	solute carrier family 2 (facilitated glucose transporter), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-24930852-3	chr16	24930701	24930901	+	874.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 10 of 12)	intron (NM_178665, intron 10 of 12)	-128838.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-70621761-2	chr18	70621661	70621861	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010773, intron 5 of 6)	intron (NM_010773, intron 5 of 6)	53469.0	NM_010773	17191.0	Mm.322	NM_010773	ENSMUSG00000024513	Mbd2	MBD2a	methyl-CpG binding domain protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-61548769-4	chr14	61548668	61548868	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310603, intron 2 of 3)	ORR1F|LTR|ERVL-MaLR	8118.0	NM_025697	66674.0	Mm.282706	NM_025697	ENSMUSG00000021930	Spryd7	6330409N04Rik|Clld6	SPRY domain containing 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-64367180-3	chr1	64367079	64367279	+	954.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-165625.0	NM_009952	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-23676045-4	chr17	23675942	23676142	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_181821)	TTS (NM_181821)	1407.0	NM_001161746	27279.0	Mm.28518	NM_013749	ENSMUSG00000023905	Tnfrsf12a	AI255180|C87282|Fn14|HPIP|TWEAK-R|TweakR	tumor necrosis factor receptor superfamily, member 12a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-144004388-3	chr2	144004295	144004495	+	638.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133626, intron 1 of 2)	intron (NM_133626, intron 1 of 2)	6868.0	NM_133626	81910.0	Mm.13705	NM_024281	ENSMUSG00000027422	Rrbp1	1700087N07Rik|5730465C04Rik|ES/130|mKIAA1398|mRRp0|mRRp1.8|mRRp10|mRRp15a|mRRp15b|mRRp16.8|mRRp2|mRRp41|mRRp47|mRRp5.4|p180	ribosome binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126272380-4	chr7	126272282	126272482	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145587)	promoter-TSS (NM_145587)	-114.0	NM_145587	104175.0	Mm.29660	NM_145587	ENSMUSG00000042978	Sbk1	Sbk	SH3-binding kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36556149-4	chr1	36556037	36556237	+	889.616699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304329, intron 1 of 14)	intron (NM_001304329, intron 1 of 14)	1420.0	NM_001304330	20353.0	Mm.29558	NM_001126047	ENSMUSG00000026121	Sema4c	AI426163|M-Sema F|Semacl1|Semaf|Semai|sema I	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-109269863-3	chr11	109269797	109269997	+	872.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001165934, intron 7 of 16)	intron (NM_001165934, intron 7 of 16)	28284.0	NM_001165934	19739.0	Mm.38548	NM_011268	ENSMUSG00000020599	Rgs9	RGS9-1|Rgs9-2	regulator of G-protein signaling 9	protein-coding	2.2376473091499	1.65410102698361	2.15310163954674	1.14387762826946	2.5848138484405	1.45465143811497	2.05606474558134	1.56659471135727	0.347450467892894	0.746163248495982	0.998431161219273
Merged-chr5-143270051-4	chr5	143269950	143270150	+	933.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017467)	promoter-TSS (NM_017467)	-28.0	NM_017467	54201.0	Mm.6666	NM_017467	ENSMUSG00000046658	Zfp316	Emzf1|Mzf3|Znf316	zinc finger protein 316	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-142494086-4	chr3	142493977	142494177	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2857.0	NM_153564	229898.0	Mm.459245	NM_153564	ENSMUSG00000105504	Gbp5	5330409J06Rik|Gbp5a	guanylate binding protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-54405993-3	chr14	54405907	54406107	+	854.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011405, intron 4 of 11)	L1M2|LINE|L1	3465.0	NM_001253680	20540.0	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34282518-1	chr17	34282418	34282618	+	745.0	f1_balb.idr	TTS (NM_010378)	TTS (NM_010378)	5253.0	NM_010378	14960.0	Mm.235338	NM_010378	ENSMUSG00000036594	H2-Aa	Aalpha|H-2Aa|H2Aa|I-Aalpha|IAalpha|Ia-1|Ia1	histocompatibility 2, class II antigen A, alpha	protein-coding	1.42216365065514	2.15622919003692	3.27605375844107	1.22280293708059	2.95293794729491	3.76492624497443	4.15821831532438	1.23158746016033	1.81514921886592	0.257623880260034	0.757096174565615
Merged-chr14-19722170-3	chr14	19722069	19722269	+	808.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29088.0	NM_008695	18074.0	Mm.20348	NM_008695	ENSMUSG00000021806	Nid2	AW547149|Ly111|NID-2|entactin-2|nidogen-2	nidogen 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-92048624-2	chr1	92048542	92048742	+	562.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_207225, intron 3 of 26)	intron (NM_207225, intron 3 of 26)	131699.0	NM_207225	208727.0	Mm.318567	NM_207225	ENSMUSG00000026313	Hdac4	4932408F19Rik|HD4	histone deacetylase 4	protein-coding	1.25370649865865	0.84840511914996	1.7123790844871	1.55767516676779	1.73727907686125	0.851626406549179	0.83716356958606	1.45625657118691	-0.339124472418763	0.809164114234448	0.998431161219273
Merged-chr6-134133906-4	chr6	134133810	134134010	+	778.170837	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 2 of 8)	intron (NM_001303102, intron 2 of 8)	98210.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	3.6636273119524	4.62333386557919	3.64447360256955	3.0252427212602	2.52425670944796	3.36450232373763	2.60619280346847	2.92942965910617	-1.51477069547163	0.0140635910460783	0.138838424605744
Merged-chr18-8638185-4	chr18	8638083	8638283	+	986.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-574673.0	NM_008058	14370.0	Mm.184289	NM_008058	ENSMUSG00000036904	Fzd8	Fz8	frizzled class receptor 8	protein-coding	3.90921510875789	4.41081805634428	4.41120631642073	4.25322881924622	1.52543920416274	3.967684630389	2.00720953901015	3.78638243268701	-1.46545059852538	0.17630221787302	0.646092365840656
Merged-chr7-43664197-4	chr7	43664089	43664289	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4028.0	NM_031181	83382.0	Mm.157702	NM_031181	ENSMUSG00000030474	Siglece	Cd170|Siglec12|Siglec5|Siglec9|Siglecl1|mSiglec-E	sialic acid binding Ig-like lectin E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-29979387-3	chr13	29979332	29979532	+	929.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010093, intron 1 of 6)	intron (NM_010093, intron 1 of 6)	4959.0	NM_001289920	13557.0	Mm.268356	NM_010093	ENSMUSG00000016477	E2f3	E2F3b|E2f3a	E2F transcription factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-27679500-2	chr15	27679400	27679600	+	722.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198301, intron 1 of 6)	intron (NM_198301, intron 1 of 6)	2042.0	NM_001242424	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-95981679-2	chr16	95981579	95981779	+	912.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019537, intron 6 of 6)	intron (NM_019537, intron 6 of 6)	9281.0	NM_019537	56088.0	Mm.396248	NM_019537	ENSMUSG00000022913	Psmg1	AW552102|Dscr2	proteasome (prosome, macropain) assembly chaperone 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-58961782-1	chr11	58961682	58961882	+	606.0	f1_balb.idr	promoter-TSS (NM_001318003)	promoter-TSS (NM_001318003)	71.0	NM_001318003	382523.0		NM_001318003		Gm12260	H3t	predicted gene 12260	protein-coding	-1.05877568042897	-1.03501312238488	-1.04817210678232	-1.05426068996071	-1.05810152525527	-1.03216151557194	-0.188696606725984	-1.05378786495764	3.16074139804981	0.330468818528456	1
Merged-chr18-46174093-3	chr18	46173988	46174188	+	834.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178872, intron 7 of 9)	intron (NM_178872, intron 7 of 9)	24730.0	NM_001170855	28105.0	Mm.277382	NM_178872	ENSMUSG00000033949	Trim36	D18Wsu100e|haprin	tripartite motif-containing 36	protein-coding	0.331273746189414	0.356078224121812	0.348011579013938	1.0094480473122	0.941110209838068	0.357889109388928	0.542808958227024	1.11003289570195	1.2068470744073	0.516937904459155	1
Merged-chr17-34129137-2	chr17	34129078	34129278	+	673.06665	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360530, intron 1 of 5)	intron (NM_001360530, intron 1 of 5)	3660.0	NM_001360530	14998.0	Mm.16373	NM_010386	ENSMUSG00000037649	H2-DMa	H-2Ma|H2-Ma	histocompatibility 2, class II, locus DMa	protein-coding	3.41520778528872	1.64336797803113	3.4443573530222	3.35094744671187	2.91928236562887	2.55826933115822	2.61763280781683	3.06728568638173	-0.591348310408079	0.422798362362327	0.900322118218157
Merged-chr1-164057028-3	chr1	164056901	164057101	+	901.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011345, exon 14 of 14)	3' UTR (NM_011345, exon 14 of 14)	-5075.0	NM_001164059	20343.0	Mm.1461	NM_011346	ENSMUSG00000026581	Sell	AI528707|CD62L|L-selectin|LECAM-1|Lnhr|Ly-22|Ly-m22|Lyam-1|Lyam1	selectin, lymphocyte	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-38078274-4	chr15	38078157	38078357	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001112721, intron 1 of 58)	CpG	597.0	NM_001112721	70790.0	Mm.476840	NM_027553	ENSMUSG00000037487	Ubr5	Edd|Edd1	ubiquitin protein ligase E3 component n-recognin 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-22813169-3	chr11	22813072	22813272	+	882.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46563.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64626547-3	chr5	64626447	64626647	+	820.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15848.0	NR_045078	100042198.0	Mm.25191	NR_045078	ENSMUSG00000105402	Gm3716	Gm1683	predicted gene 3716	ncRNA	1.85052740009351	2.39654248019771	1.02359485684018	1.00472018968591	1.86742371744389	1.99883313905073	1.02888872526387	2.07242807319445	0.218924947492851	0.861246163478644	0.998431161219273
Merged-chr1-182923027-4	chr1	182922946	182923146	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31742.0	NM_016928	53791.0	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-93069455-3	chr10	93069364	93069564	+	886.111145	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347060, intron 2 of 67)	intron (NM_001347060, intron 2 of 67)	12132.0	NM_001347060	380654.0	Mm.34980	NM_001347060	ENSMUSG00000020014	Cfap54	4930485B16Rik|Gm872	cilia and flagella associated protein 54	protein-coding	0.926429963633522	0.878282225037361	0.383322372816485	0.907326547889955	0.370312669937812	0.586766116235638	0.714463525429244	0.378875012446564	-1.80081733939525	0.310432280212727	1
Merged-chr7-109481013-4	chr7	109480908	109481108	+	795.104126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_181853, exon 7 of 20)	exon (NM_181853, exon 7 of 20)	12730.0	NM_001170913	330627.0	Mm.183528	NM_181853	ENSMUSG00000031026	Trim66	Kiaa0298-hp|Tif1d	tripartite motif-containing 66	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-46096315-2	chr7	46096215	46096415	+	892.333374	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001204411)	TTS (NM_001204411)	3922.0	NM_010602	16514.0	Mm.333863	NM_010602	ENSMUSG00000096146	Kcnj11	Kir6.2|mBIR	potassium inwardly rectifying channel, subfamily J, member 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-133177592-3	chr1	133177501	133177701	+	848.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46435.0	NM_133819	108954.0	Mm.293628	NM_133819	ENSMUSG00000046062	Ppp1r15b	1810033K10Rik|AI606441|C530022L24Rik|CReP	protein phosphatase 1, regulatory (inhibitor) subunit 15b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-62299087-2	chr4	62298987	62299187	+	763.666687	f1_balb.idr|f1_c57bl6.idr	TTS (NM_025286)	TTS (NM_025286)	7540.0	NM_001290518	20530.0	Mm.292539	NM_025286	ENSMUSG00000066152	Slc31a2	AI604396|CTR2	solute carrier family 31, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-34784276-4	chr2	34784169	34784369	+	901.68335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145522, intron 6 of 7)	B3|SINE|B2	12179.0	NM_022310	14828.0	Mm.330160	NM_022310	ENSMUSG00000026864	Hspa5	AL022860|AU019543|Bip|D2Wsu141e|D2Wsu17e|Grp78|Hsce70|SEZ-7|Sez7|baffled|mBiP	heat shock protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-20977563-2	chr9	20977463	20977663	+	835.083313	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010333)	promoter-TSS (NM_010333)	-770.0	NM_010333	14739.0	Mm.46493	NM_010333	ENSMUSG00000043895	S1pr2	1100001A16Rik|Edg5|Gpcr13|H218|LPb2|S1P2	sphingosine-1-phosphate receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-120531964-4	chr1	120531873	120532073	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26949.0	NM_010766	17167.0	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	2.14193741091913	1.96766846069675	2.13681978764222	2.07464023014981	2.38027311432701	1.45258624262776	1.41288297556016	1.15435220049625	-0.984943085352509	0.356719410101258	0.85378439273359
Merged-chr1-135634071-4	chr1	135633992	135634192	+	971.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	36316.0	NR_151586	215714.0	Mm.472859	NM_175447		Gm4793	EG215714	predicted gene 4793	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-120571402-3	chr2	120571338	120571538	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009222, intron 1 of 7)	ORR1D1|LTR|ERVL-MaLR	3767.0	NM_009222	20619.0	Mm.245715	NM_009222	ENSMUSG00000027287	Snap23	23kDa|AA408749|SNAP-23|Sndt|Syndet	synaptosomal-associated protein 23	protein-coding	3.07195186927711	2.34704167469572	2.42848136146841	2.72875752833494	3.1601966291155	2.80694235300545	2.44731978371652	3.37382235248473	0.591238995689023	0.399994735983796	0.885176145862419
Merged-chr3-37420304-4	chr3	37420218	37420418	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291044)	promoter-TSS (NM_001291044)	368.0	NM_021343	57815.0	Mm.172679	NM_021343	ENSMUSG00000027722	Spata5	2510048F20Rik|C78064|Spaf	spermatogenesis associated 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-146207670-3	chr6	146207537	146207737	+	922.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019923, intron 45 of 56)	intron (NM_019923, intron 45 of 56)	273515.0	NM_010656	16651.0	Mm.49689	NM_010656	ENSMUSG00000030255	Sspn	Krag	sarcospan	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4060838-4	chr19	4060737	4060937	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-1390.0	NM_001362043	225884.0	Mm.440201	NM_144869	ENSMUSG00000058216	Gstp3	-	glutathione S-transferase pi 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-93079629-1	chr10	93079529	93079729	+	950.5	f0_c57.idr	intron (NM_001347060, intron 1 of 67)	MTD|LTR|ERVL-MaLR	1967.0	NM_001347060	380654.0	Mm.34980	NM_001347060	ENSMUSG00000020014	Cfap54	4930485B16Rik|Gm872	cilia and flagella associated protein 54	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-147860597-4	chr5	147860507	147860707	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025624)	promoter-TSS (NM_025624)	-21.0	NM_025624	66537.0	Mm.332855	NM_025624	ENSMUSG00000029649	Pomp	2510048O06Rik|Ump1	proteasome maturation protein	protein-coding	1.72523848400375	1.16623368485921	2.29998497755553	1.81823407381996	2.35042889754653	1.17139461669187	2.01220636042391	1.82768700666627	0.262780159507768	0.813151942188758	0.998431161219273
Merged-chr10-20148344-2	chr10	20148244	20148444	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008635)	promoter-TSS (NM_008635)	-576.0	NM_008635	17761.0	Mm.20928	NM_008635	ENSMUSG00000019996	Map7	E-MAP-115|MAP-7|Mtap7|R75000|mshi|mste|ste	microtubule-associated protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81631975-2	chr10	81631875	81632075	+	637.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027480, intron 2 of 19)	B1_Mur3|SINE|Alu	3435.0	NM_027480	70615.0	Mm.304382	NM_027480	ENSMUSG00000054708	Ankrd24	4631433D01Rik|5730519E19Rik|D10Bur2e	ankyrin repeat domain 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-132242138-2	chr7	132242038	132242238	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029935, intron 6 of 7)	MER77B|LTR|ERVL	-73526.0	NR_028578	100043682.0	Mm.482794	NR_028578	ENSMUSG00000109270	Gm10584	-	predicted gene 10584	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-95745665-1	chr12	95745565	95745765	+	642.0	f0_balb.idr	intron (NM_201518, intron 1 of 1)	intron (NM_201518, intron 1 of 1)	53439.0	NM_201518	399558.0	Mm.341948	NM_201518	ENSMUSG00000047414	Flrt2	-	fibronectin leucine rich transmembrane protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-66092290-2	chr5	66092190	66092390	+	879.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_139065, intron 2 of 6)	ID_B1|SINE|B4	5889.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-6356404-2	chr4	6356302	6356502	+	897.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-9278.0	NM_016807	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-10771449-3	chr17	10771346	10771546	+	589.972229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027032, intron 2 of 4)	intron (NM_027032, intron 2 of 4)	68745.0	NM_027032	69310.0	Mm.18889	NM_027032	ENSMUSG00000037196	Pacrg	1700008H23Rik	PARK2 co-regulated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91396184-2	chr16	91396084	91396284	+	635.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347258, intron 7 of 7)	intron (NM_001347258, intron 7 of 7)	-10051.0	NM_008349	16155.0	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-105377209-4	chr13	105377110	105377310	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66483.0	NM_008308	15550.0	Mm.4716	NM_008308	ENSMUSG00000021721	Htr1a	Gpcr18	5-hydroxytryptamine (serotonin) receptor 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-54475929-4	chr13	54475817	54476017	+	879.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR12BD_Mm|LTR|ERVK	-7077.0	NM_028597	73666.0	Mm.292487	NM_028597	ENSMUSG00000025872	Thoc3	2410044K02Rik|AL033344	THO complex 3	protein-coding	4.68184820328671	3.62743588558226	3.4109610959175	4.11302721019298	4.24555712694516	1.84065013726849	3.43879155464643	3.23076768726244	-0.856725825615587	0.177931864705853	0.648362827425708
Merged-chr2-153166254-2	chr2	153166154	153166354	+	847.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133847, intron 1 of 17)	intron (NM_133847, intron 1 of 17)	4953.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-69856586-4	chr2	69856479	69856679	+	991.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4983.0	NM_001110145	20823.0	Mm.10508	NM_009278	ENSMUSG00000068882	Ssb	SS-B	Sjogren syndrome antigen B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-66127289-1	chr9	66127189	66127389	+	612.0	f0_balb.idr	intron (NM_001359210, intron 1 of 3)	intron (NM_001359210, intron 1 of 3)	678.0	NM_026635	68250.0	Mm.27107	NM_026635	ENSMUSG00000032381	Fam96a	5730536A07Rik	family with sequence similarity 96, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80963423-3	chr10	80963314	80963514	+	984.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038655, intron 2 of 3)	intron (NM_001038655, intron 2 of 3)	33323.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-102604278-3	chr11	102604209	102604409	+	851.2777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020510)	promoter-TSS (NM_020510)	-122.0	NM_020510	57265.0	Mm.36416	NM_020510	ENSMUSG00000050288	Fzd2	AL033370|AW456835|Fz10|Fzd10|Mfz10|Mfz10a	frizzled class receptor 2	protein-coding	0.97650366785774	1.8932971308378	1.04406847862636	1.32977217718681	1.82222443467654	0.848195060519278	1.05110575751205	1.33716704297087	-0.137909707714068	0.915453452077484	0.998431161219273
Merged-chr4-41555433-4	chr4	41555304	41555504	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027993, intron 1 of 5)	intron (NM_027993, intron 1 of 5)	14123.0	NM_001159583	71901.0	Mm.39215	NM_027993	ENSMUSG00000028439	Fam219a	2310028H24Rik	family with sequence similarity 219, member A	protein-coding	5.72932279313729	5.51747401722786	5.27049039136818	5.71133681457665	4.23428955380363	4.67705796814673	4.28575544360952	3.93995893481135	-1.52008383227888	3.58807281293535e-06	0.000192759840042978
Merged-chr10-16412458-4	chr10	16412360	16412560	+	968.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	620683.0	NR_131087	77538.0	Mm.128235	NR_131087	ENSMUSG00000112227	C330004P14Rik	-	RIKEN cDNA C330004P14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70598705-3	chr11	70598592	70598792	+	817.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016713, intron 2 of 30)	intron (NM_016713, intron 2 of 30)	-17202.0	NM_001145537	668433.0	Mm.425687	NM_001145537	ENSMUSG00000087279	4930544D05Rik	-	RIKEN cDNA 4930544D05 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-58567998-4	chr18	58567898	58568098	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081072, intron 1 of 9)	Lx7|LINE|L1	11758.0	NM_001081072	225579.0	Mm.258517	NM_001081072	ENSMUSG00000024600	Slc27a6	4732438L20Rik|FACVL2|FATP6|VLCS-H1	solute carrier family 27 (fatty acid transporter), member 6	protein-coding	2.37150593687087	1.75731294650728	1.69651850584689	1.07839625819908	2.50783820956313	1.77071069296307	1.71012913465497	1.08165010957275	0.176650061293006	0.879238241937937	0.998431161219273
Merged-chr18-76317800-2	chr18	76317700	76317900	+	870.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	55355.0	NM_001311070	17126.0	Mm.152699	NM_010754	ENSMUSG00000024563	Smad2	7120426M23Rik|Madh2|Madr2|Smad-2|mMad2	SMAD family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-104344309-7	chr8	104344170	104344370	+	881.142883	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024217, intron 2 of 4)	intron (NM_024217, intron 2 of 4)	3676.0	NM_024217	68119.0	Mm.390108	NM_024217	ENSMUSG00000031875	Cmtm3	9430096L06Rik|AI413895|BNAS2|Cklfsf3	CKLF-like MARVEL transmembrane domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-122856813-2	chr6	122856713	122856913	+	605.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009779)	promoter-TSS (NM_009779)	-656.0	NM_009779	12267.0	Mm.2408	NM_009779	ENSMUSG00000040552	C3ar1	AZ3B|C3AR|HNFAG09	complement component 3a receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36515822-4	chr18	36515720	36515920	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010415)	promoter-TSS (NM_010415)	-15.0	NM_010415	15200.0	Mm.289681	NM_010415	ENSMUSG00000024486	Hbegf	AW047313|Dtr|Dts|Hegfl	heparin-binding EGF-like growth factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65519744-2	chr9	65519644	65519844	+	758.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57043.0	NM_001357813	27965.0	Mm.272475	NM_138584	ENSMUSG00000032388	Spg21	ACP33|BM-019|C78576|D9Wsu18e|GL010|MAST	SPG21, maspardin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97486180-4	chr6	97486081	97486281	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	1639.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	6.29164646816331	6.11175602508015	5.71858252512266	4.89157985443114	5.70482242168328	5.78779789657	5.98398538245271	5.83530133606147	-0.0218843649493806	0.940696125163805	0.998431161219273
Merged-chr2-130450343-4	chr2	130450232	130450432	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163688)	promoter-TSS (NM_001163688)	54.0	NM_001355161	19262.0	Mm.224246	NM_008980	ENSMUSG00000027303	Ptpra	Ptpa|Ptpalpha|Rptpalpha|Rptra|Rptralpha	protein tyrosine phosphatase, receptor type, A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141618677-4	chr4	141618562	141618762	+	983.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145987)	promoter-TSS (NM_145987)	-29.0	NR_151462	213989.0	Mm.34891	NM_145987	ENSMUSG00000043085	Tmem82	-	transmembrane protein 82	protein-coding	3.51193558919148	2.75880737350929	2.50617794599722	1.83416906759924	3.87197767759925	3.16297006764588	2.81870114291568	4.00767877290549	1.22431253174652	0.0786202472678416	0.426850598553126
Merged-chr2-118030191-2	chr2	118030091	118030291	+	926.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_126479, intron 7 of 9)	intron (NR_126479, intron 7 of 9)	81011.0	NR_126479	329496.0	Mm.235844	NR_126479	ENSMUSG00000087203	Gm13986	C230060E24	predicted gene 13986	ncRNA	0.263776356621906	0.294729891747748	0.49759280002872	1.20513694873616	0.265756439929145	0.296955144381492	0.503669586299336	1.3751055604603	0.347176126247635	0.851702786126421	1
Merged-chr10-10558239-4	chr10	10558148	10558348	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026405)	promoter-TSS (NM_026405)	-41.0	NM_026405	67844.0	Mm.31486	NM_026405	ENSMUSG00000019832	Rab32	2810011A17Rik|AU022057	RAB32, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-57463518-4	chr10	57463402	57463602	+	925.966675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22851.0	NR_045353	74928.0	Mm.416643	NR_045353	ENSMUSG00000097370	4930467K11Rik	-	RIKEN cDNA 4930467K11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135486651-2	chr5	135486551	135486751	+	716.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146001, intron 1 of 30)	RSINE1|SINE|B4	58471.0	NM_146001	215114.0	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-75931382-2	chr15	75931282	75931482	+	781.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-1564.0	NM_001357005	22122.0	Mm.22596	NM_031201	ENSMUSG00000022570	Tsta3	AI256181|FX|Tstap35b	tissue specific transplantation antigen P35B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127583107-2	chr10	127583000	127583200	+	903.900024	f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 19 of 88)	intron (NM_008512, intron 19 of 88)	38048.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-156193616-1	chr2	156193516	156193716	+	544.0	f1_c57bl6.idr	Intergenic	Intergenic	-3031.0	NM_172674	228829.0	Mm.427078	NM_172674	ENSMUSG00000038116	Phf20	6820402O20Rik	PHD finger protein 20	protein-coding	0.38783274995659	1.16956167407723	0.887165177252495	0.398571425850904	0.798538960244496	0.415156257112443	0.406833961934019	1.07275944364971	-0.274868313242973	0.879690702840628	1
Merged-chr9-110681348-4	chr9	110681228	110681428	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028312, intron 1 of 6)	intron (NM_028312, intron 1 of 6)	24825.0	NM_028312	72654.0	Mm.249115	NM_028312	ENSMUSG00000019659	Ccdc12	2700094L05Rik|C76605	coiled-coil domain containing 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102724888-2	chr12	102724788	102724988	+	668.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	18773.0	NM_001142937	64113.0	Mm.291222	NM_022323	ENSMUSG00000096458	Moap1	AA987038|Map-1|Pnma4	modulator of apoptosis 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-98809049-2	chr15	98808949	98809149	+	701.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1124.0	NM_001013741	13199.0	Mm.390810	NM_001013741	ENSMUSG00000059213	Ddn	Gm748	dendrin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-30388168-3	chr16	30387985	30388185	+	964.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001128096, intron 1 of 33)	CpG	445.0	NM_001128094	224088.0	Mm.8924	NM_001128094	ENSMUSG00000022533	Atp13a3	AU022875|Gm1745|Gm541|Gm542	ATPase type 13A3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166656901-2	chr2	166656801	166657001	+	827.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	56931.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-75108741-4	chr8	75108691	75108891	+	963.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008566)	promoter-TSS (NM_008566)	-718.0	NM_001302540	17218.0	Mm.5048	NM_008566	ENSMUSG00000005410	Mcm5	AA617332|AI324988|AL033333|Cdc46|Mcmd5|P1-CDC46	minichromosome maintenance complex component 5	protein-coding	1.50013196959241	1.3084304531695	1.7740186935188	1.01226691272335	1.95273759861961	1.85551271755438	2.53656485563015	1.24402177687251	1.65482985371468	0.143547636998973	0.591443869750575
Merged-chr2-11490782-3	chr2	11490686	11490886	+	760.866638	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133232, intron 3 of 14)	ID4|SINE|ID	11304.0	NM_001177754	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-50908385-4	chr14	50908311	50908511	+	942.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15156.0	NM_001166651	546611.0	Mm.390692	NM_001166651	ENSMUSG00000090799	Klhl33	EG546611	kelch-like 33	protein-coding	4.84997772579164	4.83325857487277	3.19235640212946	4.60774329675384	4.62036311291607	4.44078794241668	5.13878295639949	4.9699111682021	0.375756815212674	0.373391364283406	0.866304548537895
Merged-chr7-4793644-2	chr7	4793544	4793744	+	984.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009081, intron 3 of 4)	CpG-12617	679.0	NM_009081	19943.0	Mm.379002	NM_009081	ENSMUSG00000030432	Rpl28	D7Wsu21e	ribosomal protein L28	protein-coding	-1.56355737717652	-1.81244775989375	-1.82128546162293	-1.82854501295842	-1.83962066705452	-1.81053259306168	-1.81928479966835	-1.82724555674025	-1.28500227969968	0.715751224811686	1
Merged-chr2-52950376-4	chr2	52950262	52950462	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	92494.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115192349-4	chr11	115192263	115192463	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033393, intron 2 of 9)	intron (NM_001033393, intron 2 of 9)	4876.0	NM_001033393	320534.0	Mm.260587	NM_001033393	ENSMUSG00000045980	Tmem104	C630005D06Rik|mFLJ00021	transmembrane protein 104	protein-coding	6.24474752123314	6.22371933805567	5.49850840659023	6.99496009248108	5.70883018504639	5.57434049288018	6.11392539584029	6.26191673504049	-0.435799519166819	0.139302088487872	0.582908112665358
Merged-chr11-22287164-4	chr11	22287063	22287263	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153078)	promoter-TSS (NM_153078)	-368.0	NM_001252515	216565.0	Mm.491265	NM_153078	ENSMUSG00000042302	Ehbp1	AF424697|Flj21950|NACSIN	EH domain binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-120952274-4	chr4	120952133	120952333	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001005788)	promoter-TSS (NM_001005788)	-532.0	NM_001005788	381549.0	Mm.331840	NM_001005788	ENSMUSG00000064141	Zfp69	Gm1029|Krab2|Zfp63	zinc finger protein 69	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-105878072-4	chr3	105877979	105878179	+	937.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027025, intron 1 of 6)	intron (NM_027025, intron 1 of 6)	7221.0	NM_001174169	69296.0	Mm.235024	NM_027025	ENSMUSG00000000562	Tmigd3	1700001d09rik|4930578J19Rik|Tg(H2-K-CALR*)del52Shmd	transmembrane and immunoglobulin domain containing 3	protein-coding	1.85293421443871	2.71663714229487	2.79899127230843	2.45270323702882	2.13249689679891	1.40488202907403	2.82101520879489	1.96093893302239	-0.687427645574019	0.447385195257111	0.914498173479176
Merged-chr8-128065228-2	chr8	128065090	128065290	+	812.599976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	213035.0	NR_105822	102465212.0		NR_105822	ENSMUSG00000099326	Mir21c	Gm28013|mmu-mir-21c	microRNA 21c	ncRNA	1.83588679604823	0.717040630332028	0.702261157724516	1.45967423382886	1.64598644827385	1.32498225640458	0.705549967807866	0.692669616551582	-0.410567395610543	0.793777084089289	0.998431161219273
Merged-chr19-3591210-2	chr19	3591159	3591359	+	737.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008513, intron 20 of 22)	intron (NM_008513, intron 20 of 22)	-15510.0	NM_028999	52036.0	Mm.284686	NM_028999	ENSMUSG00000024908	Ppp6r3	4930528G08Rik|9130026N02Rik|D19Bwg1430e|D19Ertd703e|Pp6r3|Ppcs3|Pptcs3|Sapl|Saps3|mKIAA1558	protein phosphatase 6, regulatory subunit 3	protein-coding	0.121175287898419	0.153995820364118	0.143487070432146	0.135221750713414	0.615951298759841	1.52740812087587	0.14582421731071	0.682485270626931	4.59151750142113	0.0166064650531938	1
Merged-chr3-136672000-5	chr3	136671954	136672154	+	853.4799800000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008913, intron 1 of 13)	intron (NM_008913, intron 1 of 13)	1988.0	NM_001293622	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-32388551-4	chr19	32388456	32388656	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033198)	promoter-TSS (NR_033198)	-44.0	NM_144792	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-130936027-1	chr7	130935927	130936127	+	627.0	f0_c57.idr	promoter-TSS (NM_019564)	promoter-TSS (NM_019564)	-176.0	NM_019564	56213.0	Mm.30156	NM_019564	ENSMUSG00000006205	Htra1	AI429470|HTRA|L56|Prss11|RSPP11	HtrA serine peptidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6236330-4	chr19	6236232	6236432	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198168)	promoter-TSS (NM_198168)	-492.0	NM_198168	225849.0	Mm.118076	NM_198168	ENSMUSG00000024777	Ppp2r5b	B'beta|BC026670	protein phosphatase 2, regulatory subunit B', beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-30974949-2	chr13	30974849	30975049	+	577.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025588)	promoter-TSS (NM_025588)	-902.0	NM_025588	66482.0	Mm.293510	NM_025588	ENSMUSG00000021357	Exoc2	2410030I24Rik|AI648199|Sec5|Sec5l1	exocyst complex component 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-97914925-1	chr15	97914825	97915025	+	551.0	f1_balb.idr	Intergenic	RMER10A|LTR|ERVL	-6629.0	NM_009504	22337.0	Mm.245084	NM_009504	ENSMUSG00000022479	Vdr	Nr1i1	vitamin D (1,25-dihydroxyvitamin D3) receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-57913612-2	chr15	57913512	57913712	+	771.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356310, intron 1 of 19)	RMER6A|LTR|ERVK	1413.0	NM_001356310	210544.0	Mm.390835	NM_199300	ENSMUSG00000022364	Tbc1d31	4B3|D330013L20Rik|Gm85|Wdr67	TBC1 domain family, member 31	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-101552888-5	chr3	101552846	101553046	+	771.133362	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	51761.0	NM_144900	11928.0	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-116096903-3	chr9	116096801	116097001	+	815.1777950000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029575, intron 5 of 6)	intron (NM_029575, intron 5 of 6)	78462.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-162000014-4	chr1	161999912	162000112	+	992.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038619, intron 20 of 20)	intron (NM_001038619, intron 20 of 20)	-4957.0	NR_040562	72753.0	Mm.452125	NR_040562	ENSMUSG00000090260	2810442N19Rik	-	RIKEN cDNA 2810442N19 gene	ncRNA	5.23813993959849	4.560428732673	5.50005554587487	5.0747149752792	5.27475383490309	4.53112645615159	5.53577217988187	5.16234973668815	0.0454245125185571	0.892537283509026	0.998431161219273
Merged-chr11-119493328-2	chr11	119493315	119493515	+	718.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164636, intron 2 of 8)	B1_Mus2|SINE|Alu	1795.0	NM_177394	338371.0	Mm.271946	NM_177394	ENSMUSG00000039850	Endov	A730011L01Rik	endonuclease V	protein-coding	1.19228983855032	0.911848930783669	1.88679527573303	1.63512914249969	1.45220504886406	0.915357214247154	1.11727368752684	1.92108275000431	-0.160957998271291	0.901506650208765	0.998431161219273
Merged-chr16-91599801-2	chr16	91599701	91599901	+	761.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2121.0	NM_030018	77975.0	Mm.290341	NM_030018	ENSMUSG00000022964	Tmem50b	AU015466|AU019872|B230114J08Rik	transmembrane protein 50B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-138173337-2	chr5	138173237	138173437	+	843.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_021392, intron 4 of 14)	RLTR49|LTR|ERVK	1316.0	NM_021392	11781.0	Mm.113205	NM_021392	ENSMUSG00000019518	Ap4m1	4930443L05Rik|Ap4m4	adaptor-related protein complex AP-4, mu 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35871605-2	chr17	35871505	35871705	+	823.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001146710, intron 2 of 3)	intron (NM_001146710, intron 2 of 3)	4990.0	NM_175242	76448.0	Mm.359982	NM_175242	ENSMUSG00000034595	Ppp1r18	2310014H01Rik|AA407849|AI450394	protein phosphatase 1, regulatory subunit 18	protein-coding	-2.18233058068552	-2.15536956715525	-2.16352280018114	-2.04193253143548	-2.18043796738662	-2.15360272754651	-2.16167708693786	-2.16902129354933	-0.683654500252594	0.846597994014493	1
Merged-chr12-4720044-3	chr12	4719928	4720128	+	736.788879	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029107, intron 6 of 7)	intron (NM_029107, intron 6 of 7)	18355.0	NM_029107	74855.0	Mm.269534	NM_029107	ENSMUSG00000079177	Fam228a	4930417G10Rik	family with sequence similarity 228, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-17004323-4	chr11	17004209	17004409	+	880.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019549, intron 1 of 9)	intron (NM_019549, intron 1 of 9)	4409.0	NM_019549	56193.0	Mm.98232	NM_019549	ENSMUSG00000020120	Plek	2010300B13Rik	pleckstrin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-144003015-4	chr5	144002922	144003122	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177682, intron 7 of 14)	intron (NM_177682, intron 7 of 14)	11831.0	NM_177682	231874.0	Mm.320432	NM_177682	ENSMUSG00000029617	Ccz1	AU022870	CCZ1 vacuolar protein trafficking and biogenesis associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-18767209-4	chr2	18767123	18767323	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-6361.0	NR_126079	100041479.0	Mm.393659	NR_126079	ENSMUSG00000092353	Gm3363	-	predicted gene 3363	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-49201846-3	chr13	49201708	49201908	+	840.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5b|LINE|L1	14218.0	NM_026738	68480.0	Mm.3336	NM_026738	ENSMUSG00000037960	Card19	1110007C09Rik|AI851695|Bincard	caspase recruitment domain family, member 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-44139775-4	chr16	44139692	44139892	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028108)	promoter-TSS (NM_028108)	1.0	NM_001347239	72117.0	Mm.278726	NM_028108	ENSMUSG00000022698	Naa50	2600005K24Rik|2810441M03Rik|AW112078|Mak3|Mak3p|Nat13|Nat5|San	N(alpha)-acetyltransferase 50, NatE catalytic subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27676042-2	chr2	27675942	27676142	+	664.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1159.0	NM_011305	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180849730-4	chr1	180849640	180849840	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1411.0	NM_145943	208768.0	Mm.272625	NM_145943	ENSMUSG00000038806	Sde2	-	SDE2 telomere maintenance homolog (S. pombe)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99108235-2	chr7	99108147	99108347	+	831.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 3 of 14)	intron (NM_178635, intron 3 of 14)	32897.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	0.580611662099645	1.59222216453666	0.423436834870282	0.414181118025863	1.28044833269438	1.03836206642959	0.42605622633073	0.415808707655848	-0.103487924064844	0.952809158923224	0.998431161219273
Merged-chr19-34985765-2	chr19	34985665	34985865	+	796.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20369.0	NR_035473	100316775.0		NR_035473	ENSMUSG00000089151	Mir1950	mmu-mir-1950	microRNA 1950	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-56793239-4	chr10	56793140	56793340	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	361259.0	NR_152768	102640560.0	Mm.417249	NR_152768		Gm36595	-	predicted gene, 36595	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115521998-4	chr5	115521901	115522101	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011223, intron 1 of 10)	L1M5|LINE|L1	15325.0	NM_133915	19303.0	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	0.986167690382963	1.06751496972998	2.3534807161053	1.25902033764998	2.24838804804132	1.90188583225806	2.37375159818733	1.46137907284419	1.26632684391502	0.282304846402099	0.784878071602676
Merged-chr11-86571693-2	chr11	86571593	86571793	+	735.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12465.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-27664329-4	chr15	27664228	27664428	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001242424, intron 4 of 8)	intron (NM_001242424, intron 4 of 8)	17214.0	NM_001242424	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71882778-2	chr8	71882678	71882878	+	669.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145624, intron 1 of 3)	intron (NM_145624, intron 1 of 3)	710.0	NM_145624	236193.0	Mm.290790	NM_145624	ENSMUSG00000056019	Zfp709	BC021921|GIOT-4|HIT-40	zinc finger protein 709	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52037462-2	chr13	52037362	52037562	+	574.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59279.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-53608396-4	chr7	53608301	53608501	+	898.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR26|LTR|ERVK	283488.0	NR_105746	102466619.0		NR_105746	ENSMUSG00000099176	Mir6238	Gm27982|mmu-mir-6238	microRNA 6238	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-58510373-2	chr16	58510273	58510473	+	839.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357433, intron 1 of 10)	intron (NM_001357433, intron 1 of 10)	13053.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-27378567-4	chr14	27378461	27378661	+	981.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027871, intron 3 of 10)	intron (NM_027871, intron 3 of 10)	17172.0	NM_001289688	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	0.903134085020177	2.33272775674883	1.01043113094907	0.528236681938653	0.729816389911642	0.565870214020123	1.48432678417999	0.530868439514925	-1.70172704822046	0.254219658547111	0.751985668675266
Merged-chr12-100791649-4	chr12	100791545	100791745	+	954.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361017, intron 3 of 14)	intron (NM_001361017, intron 3 of 14)	12588.0	NM_145448	217830.0	Mm.218590	NM_145448	ENSMUSG00000021185	Dglucy	9030617O03Rik	D-glutamate cyclase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-59974278-3	chr10	59974172	59974372	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22502.0	NM_029083	74747.0	Mm.21697	NM_029083	ENSMUSG00000020108	Ddit4	5830413E08Rik|AA415483|REDD1|Rtp801|dig2	DNA-damage-inducible transcript 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-50634391-4	chr10	50634289	50634489	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198007, intron 4 of 41)	L1M4|LINE|L1	41720.0	NM_198007	77987.0	Mm.222497	NM_198007	ENSMUSG00000038774	Ascc3	ASC1p200|B630009I04Rik|BC023451|D430001L07Rik|D630041L21|Helic1|RNAH	activating signal cointegrator 1 complex subunit 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-55891415-2	chr17	55891314	55891514	+	572.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145490)	promoter-TSS (NM_145490)	-679.0	NM_001360136	224893.0	Mm.294853	NM_145490	ENSMUSG00000003198	Zfp959	-	zinc finger protein 959	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-154714142-3	chr2	154714041	154714241	+	926.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57115.0	NM_029362	75608.0	Mm.262480	NM_029362	ENSMUSG00000038467	Chmp4b	2010012F05Rik|C76846|Snf7-2	charged multivesicular body protein 4B	protein-coding	1.96917943996828	1.63792191378088	1.32300903493217	2.2125055941938	2.51077235211362	3.0705869027693	2.29767540686456	2.87612127797813	2.05074069310186	0.0215004535787881	0.187966323820114
Merged-chr14-20656496-2	chr14	20656396	20656596	+	570.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021508)	promoter-TSS (NM_021508)	44.0	NM_021508	59011.0	Mm.439911	NM_021508	ENSMUSG00000068697	Myoz1	2310001N11Rik|AV090278|FATZ|Myoz	myozenin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-31470237-2	chr2	31470137	31470337	+	855.7000119999999	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007494)	promoter-TSS (NM_007494)	-33.0	NM_007494	11898.0	Mm.3217	NM_007494	ENSMUSG00000076441	Ass1	AA408052|ASS|Ass-1|fold	argininosuccinate synthetase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-140817575-2	chr6	140817475	140817675	+	553.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	190690.0	NM_001309436	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-148087522-4	chr4	148087423	148087623	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301281, intron 1 of 4)	intron (NM_001301281, intron 1 of 4)	541.0	NM_009642	11610.0	Mm.46247	NM_009642	ENSMUSG00000029007	Agtrap	3300002E14Rik|AT1R|Atrap|D4Wsu124e	angiotensin II, type I receptor-associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-39610460-3	chr8	39610372	39610572	+	665.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113326, intron 7 of 9)	L1MC2|LINE|L1	32206.0	NM_031195	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	0.487247997756193	0.558804858979481	0.356608689331761	0.781118764117354	0.731133847580431	0.365401559031057	1.13770334420384	0.520741313641523	1.03474773486589	0.537512694052666	1
Merged-chr3-103737935-3	chr3	103737824	103738024	+	859.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133859)	promoter-TSS (NM_133859)	77.0	NM_133859	99543.0	Mm.211535	NM_133859	ENSMUSG00000027848	Olfml3	2810002E22Rik|AI115209|AW550633|HNOEL-iso|ONT3|mONT3	olfactomedin-like 3	protein-coding	-0.46667237415045	-0.588598059437846	-0.168373091683702	-0.312890374986128	-0.463068449116189	-0.587915085797325	-0.590951897698875	-0.593526883950647	-2.25503090360157	0.36938785980187	1
Merged-chr11-120378782-4	chr11	120378678	120378878	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027980)	promoter-TSS (NM_027980)	-32.0	NM_027980	71885.0	Mm.274890	NM_027980	ENSMUSG00000025384	Faap100	2310003H01Rik	Fanconi anemia core complex associated protein 100	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128387459-4	chr2	128387316	128387516	+	941.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028591, intron 1 of 1)	intron (NR_028591, intron 1 of 1)	41935.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-52931583-4	chr2	52931480	52931680	+	903.0750119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	ORR1B2|LTR|ERVL-MaLR	73712.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-10454703-2	chr14	10454603	10454803	+	569.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360141, intron 4 of 9)	intron (NM_001360141, intron 4 of 9)	-1245.0	NM_001308286	14198.0	Mm.397619	NM_010210	ENSMUSG00000060579	Fhit	AW045638|Fra14A2	fragile histidine triad gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71289309-4	chr8	71289215	71289415	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142322, intron 1 of 39)	intron (NM_001142322, intron 1 of 39)	16601.0	NM_001142323	17925.0	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	4.44701191918004	3.74601191917196	2.58819922106639	4.94764906520211	4.48007077508814	4.29525575848746	3.34315039661556	3.97463046608955	-0.143833274768165	0.796530880492531	0.998431161219273
Merged-chr15-90963506-4	chr15	90963382	90963582	+	939.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016705, intron 22 of 32)	GA-rich|Low_complexity|Low_complexity	-65006.0	NR_033583	20738.0	Mm.431547	NR_033583	ENSMUSG00000116210	Spn-ps	Cd43-ps	sialophorin, pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-67572555-2	chr3	67572434	67572634	+	906.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-10234.0	NM_025813	66868.0	Mm.491153	NM_025813	ENSMUSG00000027775	Mfsd1	1200003O06Rik	major facilitator superfamily domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-88613339-1	chr17	88613239	88613439	+	1000.0	f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-13216.0	NM_029858	77057.0	Mm.482203	NM_029858	ENSMUSG00000033855	Ston1	4921524J06Rik|C86231|Salf|Sblf	stonin 1	protein-coding	0.524160209333402	-0.0891750799983153	1.45860029155769	-0.107718362905847	-0.119594486621622	-0.086877739332045	-0.0972245336520363	-0.106275706564893	-4.50024784869733	0.0347508029461222	1
Merged-chr8-76899690-2	chr8	76899585	76899785	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NR_028579, intron 1 of 1)	CpG	936.0	NR_028579	102640923.0	Mm.367571	NR_028579	ENSMUSG00000074235	Gm10649	-	predicted gene 10649	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-36698011-4	chr7	36697929	36698129	+	935.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172298)	promoter-TSS (NM_172298)	-89.0	NM_172298	243931.0	Mm.44141	NM_172298	ENSMUSG00000021217	Tshz3	A630038G13Rik|Tsh3|Zfp537|mKIAA1474|teashirt3	teashirt zinc finger family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-184738087-4	chr1	184737985	184738185	+	984.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5592.0	NM_008250	15284.0	Mm.1347	NM_008250	ENSMUSG00000039377	Hlx	Hlx1	H2.0-like homeobox	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-160618799-4	chr2	160618704	160618904	+	914.05835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	G-rich|Low_complexity|Low_complexity	-27093.0	NM_009408	21969.0	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71295443-2	chr8	71295343	71295543	+	803.099976	f1_balb.idr|f1_c57bl6.idr	intron (NM_001142322, intron 2 of 39)	intron (NM_001142322, intron 2 of 39)	22729.0	NM_001142323	17925.0	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-108893402-6	chr12	108893257	108893457	+	960.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177602)	promoter-TSS (NM_177602)	-146.0	NM_011710	22375.0	Mm.38433	NM_011710	ENSMUSG00000021266	Wars	TrpRS|WRS	tryptophanyl-tRNA synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-68929634-3	chr18	68929545	68929745	+	664.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038051, intron 3 of 6)	intron (NR_038051, intron 3 of 6)	21883.0	NR_038051	78931.0	Mm.160155	NR_038051		4930546C10Rik	-	RIKEN cDNA 4930546C10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83296597-2	chr11	83296497	83296697	+	614.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_134025, intron 3 of 3)	intron (NM_134025, intron 3 of 3)	2293.0	NR_028362	100302731.0		NR_028362	ENSMUSG00000065715	Snord7	-	small nucleolar RNA, C/D box 7	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-22120764-2	chr16	22120664	22120864	+	701.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_183029, intron 2 of 15)	intron (NM_183029, intron 2 of 15)	42535.0	NM_183029	319765.0	Mm.489442	NM_183029	ENSMUSG00000033581	Igf2bp2	C330012H03Rik|IMP-2|Imp2|Neilsen	insulin-like growth factor 2 mRNA binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-84358827-4	chr2	84358725	84358925	+	932.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018782, intron 9 of 15)	intron (NM_018782, intron 9 of 15)	66441.0	NM_018782	54598.0	Mm.75467	NM_018782	ENSMUSG00000059588	Calcrl	AV071593|CRLR	calcitonin receptor-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53045928-2	chr4	53045828	53046028	+	966.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 38 of 49)	intron (NM_013454, intron 38 of 49)	34048.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134928741-4	chr6	134928647	134928847	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_037955)	promoter-TSS (NR_037955)	-345.0	NR_037956	381822.0	Mm.5935	NR_037955	ENSMUSG00000098318	Lockd	1190002F15Rik|AI120476|Droc	lncRNA downstream of Cdkn1b	ncRNA	3.24655243142744	3.15264309799956	3.7249468937781	3.06561087476187	3.27304538880854	3.48537622559524	3.75226578227433	3.27073514800469	0.213386662963895	0.700619983383173	0.998431161219273
Merged-chr10-21623608-2	chr10	21623508	21623708	+	829.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30463.0	NR_027968	67692.0	Mm.54306	NM_183266	ENSMUSG00000050844	1700020N01Rik	-	RIKEN cDNA 1700020N01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-20310140-2	chr10	20310040	20310240	+	640.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2329.0	NM_001025392	72567.0	Mm.294783	NM_153787	ENSMUSG00000037608	Bclaf1	2610102K23Rik|2700025J07Rik|2810454G14Rik|5730534O06Rik|AI450190|AW556225|Btf|mKIAA0164	BCL2-associated transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-24603554-4	chr16	24603454	24603654	+	935.05835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 4 of 12)	intron (NM_178665, intron 4 of 12)	74240.0	NR_038091	624582.0	Mm.439775	NR_038091		Morf4l1-ps1	A730098P11Rik	mortality factor 4 like 1, pseudogene 1	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-116607073-8	chr7	116606969	116607169	+	936.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	102700.0	NM_001360375	53322.0	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71355663-2	chr8	71355587	71355787	+	581.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001142322, intron 31 of 39)	intron (NM_001142322, intron 31 of 39)	-11161.0	NM_001145780	67023.0	Mm.41890	NM_025917	ENSMUSG00000002395	Use1	2010315L10Rik|5730403H22Rik|AV002165|D12|Ed2|Q-snare|p31	unconventional SNARE in the ER 1 homolog (S. cerevisiae)	protein-coding	-0.113349418324336	0.258077142816681	0.467463274012899	-0.106801597123921	-0.112375152519502	-0.0965983213357222	0.478607123716819	-0.10611273731131	-0.604171592050786	0.795329546828034	1
Merged-chr18-83011845-4	chr18	83011750	83011950	+	834.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-91290.0	NR_033307	75853.0	Mm.420737	NR_033307		4930592I03Rik	-	RIKEN cDNA 4930592I03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-10856867-3	chr17	10856753	10856953	+	644.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001317726, intron 1 of 6)	intron (NM_001317726, intron 1 of 6)	16494.0	NM_016694	50873.0	Mm.311110	NM_016694	ENSMUSG00000023826	Park2	PRKN	Parkinson disease (autosomal recessive, juvenile) 2, parkin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-150601002-4	chr5	150600897	150601097	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001362416, exon 8 of 8)	3' UTR (NM_001362416, exon 8 of 8)	-6472.0	NM_133898	100637.0	Mm.279932	NM_133898	ENSMUSG00000041132	N4bp2l1	2410024N18Rik|AI428195|B230342M21Rik	NEDD4 binding protein 2-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-143523011-2	chr5	143522911	143523111	+	602.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347530, intron 1 of 6)	intron (NM_001347530, intron 1 of 6)	4982.0	NM_009007	19353.0	Mm.292510	NM_009007	ENSMUSG00000001847	Rac1	AL023026|D5Ertd559e	Rac family small GTPase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-122038767-3	chr10	122038671	122038871	+	939.1333619999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081037, intron 1 of 21)	MLT1J|LTR|ERVL-MaLR	8544.0	NM_001242411	117600.0	Mm.288698	NM_001081037	ENSMUSG00000020121	Srgap1	4930572H05Rik|Arhgap13	SLIT-ROBO Rho GTPase activating protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-73542435-2	chr7	73542335	73542535	+	691.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081345)	promoter-TSS (NM_001081345)	-689.0	NM_001081345	244059.0	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-37135179-2	chr15	37135079	37135279	+	584.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-97857.0	NM_026496	252973.0	Mm.244612	NM_026496	ENSMUSG00000022286	Grhl2	0610015A08Rik|BOM|Tcfcp2l3|clft3	grainyhead like transcription factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-86507819-1	chr17	86507719	86507919	+	603.666687	f1_balb.idr	intron (NM_011104, intron 10 of 14)	intron (NM_011104, intron 10 of 14)	-220641.0	NR_045435	72104.0	Mm.443401	NR_045435	ENSMUSG00000100738	2010106C02Rik	-	RIKEN cDNA 2010106C02 gene	ncRNA	1.75951167572352	1.28823155775626	1.57143173547022	1.39176212034675	1.34177096799406	1.47930073096002	1.71167013925828	1.9555429578523	0.441187410084732	0.688608348223068	0.996533206832645
Merged-chr10-96231368-2	chr10	96231268	96231468	+	720.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_110448, intron 1 of 2)	intron (NR_110448, intron 1 of 2)	5161.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94568757-2	chr10	94568657	94568857	+	596.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359760, intron 1 of 3)	intron (NM_001359760, intron 1 of 3)	-6500.0	NM_001168684	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111843060-6	chr12	111842926	111843126	+	907.2777710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011625, intron 7 of 16)	intron (NM_011625, intron 7 of 16)	28856.0	NM_026752	68520.0	Mm.390497	NM_026752	ENSMUSG00000021286	Zfyve21	1110013H04Rik|AW558780|C85416	zinc finger, FYVE domain containing 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-58264797-4	chr15	58264687	58264887	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-49895.0	NM_026346	67731.0	Mm.25683	NM_026346	ENSMUSG00000022358	Fbxo32	4833442G10Rik|AI430017|ATROGIN1|Gm20361|MAFbx	F-box protein 32	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10287596-3	chr19	10287499	10287699	+	899.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198114, intron 1 of 19)	MLTR14|LTR|ERV1	17278.0	NM_198114	269060.0	Mm.329718	NM_198114	ENSMUSG00000035735	Dagla	Nsddr	diacylglycerol lipase, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59525213-4	chr15	59525039	59525239	+	924.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026746, intron 4 of 6)	intron (NM_026746, intron 4 of 6)	-123515.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91923490-2	chr2	91923390	91923590	+	697.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007699, intron 1 of 1)	intron (NM_007699, intron 1 of 1)	1301.0	NM_007699	12672.0	Mm.330405	NM_007699	ENSMUSG00000040495	Chrm4	Chrm-4|M4	cholinergic receptor, muscarinic 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-59565796-4	chr9	59565709	59565909	+	866.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010421)	TTS (NM_010421)	-12528.0	NM_175235	76183.0	Mm.265415	NM_175235	ENSMUSG00000032297	Celf6	6330569O16Rik|Brunol6	CUGBP, Elav-like family member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-53471453-3	chr10	53471360	53471560	+	778.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTRIS4|LTR|ERV1	47529.0	NR_037973	100502868.0	Mm.297722	NR_037973	ENSMUSG00000112739	Gm20597	B230314j19	predicted gene, 20597	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-137531911-4	chr5	137531902	137532102	+	857.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010312, intron 1 of 9)	intron (NM_010312, intron 1 of 9)	1304.0	NM_010312	14693.0	Mm.30141	NM_010312	ENSMUSG00000029713	Gnb2	Gnb-2	guanine nucleotide binding protein (G protein), beta 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101424306-2	chr11	101424206	101424406	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172566)	promoter-TSS (NM_172566)	-779.0	NM_172566	217201.0	Mm.305941	NM_172566	ENSMUSG00000035007	Rundc1	AW125546|D930024B17	RUN domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-47732901-1	chr18	47732801	47733001	+	547.0	f0_balb.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	56632.0	NR_152200	100042982.0	Mm.125235	NR_152200		Gm4146	Gm45939	predicted gene 4146	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-79550693-2	chr14	79550593	79550793	+	796.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007920, intron 2 of 8)	ORR1C2|LTR|ERVL-MaLR	35019.0	NM_001286411	13709.0	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-108232225-3	chr6	108232125	108232325	+	564.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 2 of 61)	intron (NM_010585, intron 2 of 61)	19129.0	NM_010585	16438.0	Mm.227912	NM_010585	ENSMUSG00000030102	Itpr1	D6Pas2|Gm10429|IP3R 1|IP3R1|InsP3R|Ip3r|Itpr-1|P400|Pcp-1|Pcp1|insP3R1|opt|wblo	inositol 1,4,5-trisphosphate receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-31220837-3	chr6	31220782	31220982	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040260, intron 1 of 5)	intron (NR_040260, intron 1 of 5)	531.0	NR_040259	73652.0	Mm.441297	NR_040257	ENSMUSG00000087380	2210408F21Rik	-	RIKEN cDNA 2210408F21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123058980-3	chr5	123058883	123059083	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11967.0	NM_001347456	74890.0	Mm.141383	NM_029112	ENSMUSG00000029477	Morn3	4930438O03Rik	MORN repeat containing 3	protein-coding	2.52377764581401	2.74334194367409	1.38858098381406	2.26084419543384	3.41141290895974	4.48334286513355	1.96301155268428	2.80889345832675	1.97055074574725	0.0163270562567543	0.15408391790918
Merged-chr5-111178361-2	chr5	111178268	111178468	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_001267622, intron 5 of 22)	intron (NM_001267622, intron 5 of 22)	-152329.0	NM_001301644	56305.0	Mm.200516	NM_019640	ENSMUSG00000050017	Pitpnb	PI-TP-beta	phosphatidylinositol transfer protein, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-62185243-2	chr10	62185143	62185343	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_197996)	TTS (NM_197996)	8984.0	NR_106122	102465767.0		NR_106122	ENSMUSG00000099185	Mir7662	Gm27876|mmu-mir-7662	microRNA 7662	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81355559-2	chr10	81355459	81355659	+	744.416687	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-1932.0	NM_028657	73822.0	Mm.182281	NM_028657	ENSMUSG00000034854	Mfsd12	C19orf28|F630110N24Rik|Wdt1|gr	major facilitator superfamily domain containing 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71162861-2	chr17	71162761	71162961	+	801.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20671.0	NM_001357791	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43632059-2	chr4	43631959	43632159	+	885.5	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001355466, exon 1 of 21)	5' UTR (NM_001355466, exon 1 of 21)	124.0	NM_173788	230103.0	Mm.103477	NM_173788	ENSMUSG00000028469	Npr2	GC-B|GC-B2|GC-B3|cn|mNPR-B|pwe	natriuretic peptide receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-73791973-4	chr15	73791888	73792088	+	704.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033365, intron 5 of 10)	intron (NM_001033365, intron 5 of 10)	17945.0	NM_001362047	100041273.0	Mm.379154	NM_001362047		Gm3244	-	predicted pseudogene 3244	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-105495349-4	chr5	105495256	105495456	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24115.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	5.13234280121914	5.14801216698747	5.95417533033387	5.85941498766235	5.9593912141326	6.33430573983372	6.01263648752441	6.49787878789312	0.710611875800192	0.00901900592851515	0.101130872084416
Merged-chr12-25251564-2	chr12	25251464	25251664	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	122390.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-75553875-4	chr9	75553768	75553968	+	950.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357828, intron 1 of 10)	intron (NM_001357828, intron 1 of 10)	5789.0	NM_016963	50875.0	Mm.38445	NM_016963	ENSMUSG00000058587	Tmod3	U-Tmod|UTMOD	tropomodulin 3	protein-coding	-0.299328868859621	0.21551159519342	-0.289828752323316	-0.293398409424911	-0.149095509542598	-0.284162913122399	0.402808966802503	-0.292774657047291	0.847172678430742	0.728793492510535	1
Merged-chr19-56756506-3	chr19	56756365	56756565	+	997.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34093.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-69225121-2	chr17	69225021	69225221	+	649.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355736, intron 3 of 21)	intron (NM_001355736, intron 3 of 21)	52085.0	NR_045428	69750.0	Mm.439063	NR_045428	ENSMUSG00000100572	2410021H03Rik	-	RIKEN cDNA 2410021H03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-142394263-4	chr3	142394152	142394352	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001190854, intron 1 of 12)	intron (NM_001190854, intron 1 of 12)	1444.0	NM_001190853	56376.0	Mm.117709	NM_019808	ENSMUSG00000028273	Pdlim5	1110001A05Rik|AI987914|C87059|Enh|Enh1|Enh2|Enh3|LIM	PDZ and LIM domain 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-55054231-3	chr6	55054163	55054363	+	660.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_180678, intron 6 of 16)	intron (NM_180678, intron 6 of 16)	16262.0	NM_180678	353172.0	Mm.250004	NM_180678	ENSMUSG00000029777	Gars	GENA202|Gena201|Nmf249|Sgrp23	glycyl-tRNA synthetase	protein-coding	0.06634868556009	-0.186796024730952	0.571726241908244	-0.195312968697512	0.183725290396141	-0.185712362474591	-0.19054319202035	-0.194664916669044	-1.62014948970959	0.496456076855864	1
Merged-chr11-117091997-4	chr11	117091889	117092089	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14641.0	NR_105853	102465258.0		NR_105853	ENSMUSG00000104740	Mir6516	mmu-mir-6516	microRNA 6516	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-35586186-4	chr7	35586085	35586285	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145840)	promoter-TSS (NM_145840)	-62.0	NM_145633	245886.0	Mm.272620	NM_145633	ENSMUSG00000034867	Ankrd27	AA408090|BC016493|D330003H11Rik|Varp	ankyrin repeat domain 27 (VPS9 domain)	protein-coding	4.82377800796782	4.59908173175867	4.75478741949655	5.01930912750037	5.34524297506272	5.18971800291996	4.59345478626466	5.42093143407343	0.437913133621996	0.18463252089376	0.660208916853765
Merged-chr3-19659560-2	chr3	19659460	19659660	+	671.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081281, intron 3 of 9)	intron (NM_001081281, intron 3 of 9)	15100.0	NM_001081281	381485.0	Mm.35419	NM_001081281	ENSMUSG00000060913	Trim55	D830041C10Rik|Murf2|Rnf29	tripartite motif-containing 55	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-51405798-2	chr13	51405698	51405898	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2820.0	NM_010101	13610.0	Mm.136736	NM_010101	ENSMUSG00000067586	S1pr3	AI132464|Edg3|Lpb3|S1p3	sphingosine-1-phosphate receptor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-48345020-2	chr17	48344920	48345120	+	644.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1381.0	NM_031254	83433.0	Mm.261623	NM_031254	ENSMUSG00000023992	Trem2	TREM-2|Trem2a|Trem2b|Trem2c	triggering receptor expressed on myeloid cells 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-11101947-2	chr8	11101847	11102047	+	894.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-93517.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-89419606-2	chr7	89419506	89419706	+	840.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6700.0	NR_102276	101521.0	Mm.26902	NR_102276	ENSMUSG00000109311	AI314278	-	expressed sequence AI314278	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-19315588-2	chr3	19315518	19315718	+	598.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-4296.0	NM_001122759	18583.0	Mm.355614	NM_008802	ENSMUSG00000069094	Pde7a	AU015378|AW047537	phosphodiesterase 7A	protein-coding	0.641952929390006	1.35742467317385	0.666166717981578	1.2561187108915	1.37890248102275	0.680295833124945	0.873115313725441	1.46711407289684	0.502640686449754	0.744539349272616	0.998431161219273
Merged-chr9-100642314-2	chr9	100642222	100642422	+	773.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1126.0	NM_009282	20842.0	Mm.42135	NM_009282	ENSMUSG00000037286	Stag1	AU045003|SA-1|Scc3	stromal antigen 1	protein-coding	0.885762898750194	0.639864710221838	1.20818516292182	1.05756081639385	0.893023388743993	0.641846489491832	1.2198564519532	1.06383348727688	0.0370685234240376	0.980003525283252	1
Merged-chr5-135686626-4	chr5	135686537	135686737	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2508.0	NM_008898	18984.0	Mm.3863	NM_008898	ENSMUSG00000005514	Por	4933424M13Rik|CPR|CYPOR|P450R	P450 (cytochrome) oxidoreductase	protein-coding	1.85191803836296	2.67917845327561	1.31752420140851	2.70406907113097	1.48209508791307	3.37959725350362	2.20905712198566	3.1037016416928	0.942722630752269	0.315744600835336	0.81836011870312
Merged-chr8-121547287-2	chr8	121547187	121547387	+	1000.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045903, exon 3 of 3)	non-coding (NR_045903, exon 3 of 3)	2899.0	NR_045903	72259.0	Mm.396206	NR_045903	ENSMUSG00000097424	1700030M09Rik	-	RIKEN cDNA 1700030M09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120930197-3	chr11	120930065	120930265	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027745, intron 1 of 18)	RLTR33|LTR|ERVK	2707.0	NM_027745	71276.0	Mm.275751	NM_027745	ENSMUSG00000048445	Ccdc57	4933434G05Rik	coiled-coil domain containing 57	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-101995633-4	chr5	101995543	101995743	+	923.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 3 of 66)	intron (NM_172882, intron 3 of 66)	74278.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6968664-2	chr19	6968564	6968764	+	955.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290349, intron 1 of 30)	intron (NM_001290349, intron 1 of 30)	1150.0	NM_008874	18797.0	Mm.273204	NM_008874	ENSMUSG00000024960	Plcb3	mKIAA4098	phospholipase C, beta 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-46892708-4	chr17	46892606	46892806	+	983.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_178385)	TTS (NM_178385)	2085.0	NM_178385	72726.0	Mm.33780	NM_178385	ENSMUSG00000036430	Tbcc	2810055C19Rik	tubulin-specific chaperone C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-128172695-4	chr7	128172591	128172791	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1255.0	NM_001029872	381924.0	Mm.334257	NM_001029872	ENSMUSG00000070369	Itgad	Cd11d	integrin, alpha D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-96418530-1	chr7	96418430	96418630	+	890.0	f0_balb.idr	intron (NM_011858, intron 2 of 32)	intron (NM_011858, intron 2 of 32)	-76566.0	NR_046043	670727.0	Mm.421352	NR_046043	ENSMUSG00000085751	Gm15412	-	predicted gene 15412	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-66893390-4	chr15	66893296	66893496	+	937.633301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018865, intron 1 of 4)	intron (NM_018865, intron 1 of 4)	2003.0	NM_018865	22402.0	Mm.10222	NM_018865	ENSMUSG00000005124	Wisp1	AW146261|CCN4|Elm1	WNT1 inducible signaling pathway protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171291151-1	chr1	171291051	171291251	+	595.0	f1_balb.idr	intron (NM_025388, intron 2 of 6)	intron (NM_025388, intron 2 of 6)	-3190.0	NM_013919	30941.0	Mm.27510	NM_013919	ENSMUSG00000053483	Usp21	ESTM28|Usp16|Usp23|W53272	ubiquitin specific peptidase 21	protein-coding	2.27966972816969	2.55971891733252	2.06231912638841	1.83381218346004	2.92772905321192	2.89047456644827	1.68463031116951	2.70900272382413	0.943858814417367	0.262621175565638	0.764117606499117
Merged-chr5-95950504-2	chr5	95950404	95950604	+	649.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6435.0	NM_018866	55985.0	Mm.10116	NM_018866	ENSMUSG00000023078	Cxcl13	4631412M08Rik|ANGIE2|Angie|BCA-1|BLC|BLR1L|Scyb13	chemokine (C-X-C motif) ligand 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-5806884-2	chr13	5806784	5806984	+	754.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	51208.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-3164186-2	chr11	3164087	3164287	+	1000.0	f0_balb.idr|f1_balb.idr	intron (NM_030207, intron 9 of 32)	B2_Mm2|SINE|B2	29276.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-9468061-4	chr14	9467971	9468171	+	857.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11B|LTR|ERVK	-416024.0	NR_030680	100042415.0	Mm.235938	NR_030680	ENSMUSG00000089686	Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	1.76693616436423	0.772138556096671	0.964581551582048	1.65533028772943	1.2941630819174	1.00061350352677	0.971133853539478	0.945484722432175	-1.2530197743093	0.354914300513224	0.853473098120856
Merged-chr13-45963075-3	chr13	45962975	45963175	+	879.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199304, intron 1 of 6)	intron (NM_001199304, intron 1 of 6)	1916.0	NM_001199304	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-42517227-2	chr19	42517127	42517327	+	665.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1578.0	NM_177464	52013.0	Mm.254169	NM_177464	ENSMUSG00000025184	R3hcc1l	1700036B12Rik|AI450607|C10orf28|D19Ertd386e|GIDRP86|Gidrp88	R3H domain and coiled-coil containing 1 like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111958294-3	chr12	111958148	111958348	+	886.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8761.0	NM_027360	70257.0	Mm.318	NM_027360	ENSMUSG00000021290	2010107E04Rik	9430003J03Rik|AU043134|AV124504|Mp68	RIKEN cDNA 2010107E04 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-47433558-1	chr19	47433458	47433658	+	829.0	f1_c57bl6.idr	intron (NM_008018, intron 1 of 14)	intron (NM_008018, intron 1 of 14)	30853.0	NM_001164717	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	2.16022985829101	2.30247069870207	2.2256078562349	2.63192551886311	1.82226888570285	2.44000527189575	1.3479337899804	2.28684129995476	-0.723302477703154	0.431545422743459	0.904679012727573
Merged-chr6-124660470-2	chr6	124660370	124660570	+	588.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2634.0	NR_149320	14792.0	Mm.273915	NM_145130	ENSMUSG00000004270	Lpcat3	C3f|Grcc3f|Lpcat|Lpeat|Lplat5|Lpsat|Mboat5|Moact5|Oact5|PTG	lysophosphatidylcholine acyltransferase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114701890-2	chr11	114701790	114701990	+	706.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_053273, intron 5 of 13)	intron (NM_053273, intron 5 of 13)	-25522.0	NM_001034878	432611.0	Mm.212764	NM_001034878	ENSMUSG00000034706	Dnaic2	C030015H18Rik|Dnai2|Gm728|b2b3405Clo	dynein, axonemal, intermediate chain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-50949693-4	chr13	50949599	50949799	+	875.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	151028.0	NR_029463	77428.0	Mm.405630	NR_029463		9430083A17Rik	-	RIKEN cDNA 9430083A17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-161804500-1	chr1	161804400	161804600	+	711.0	f1_balb.idr	Intergenic	Intergenic	-16005.0	NM_010177	14103.0	Mm.3355	NM_010177	ENSMUSG00000000817	Fasl	APT1LG1|CD178|CD95-L|CD95L|Fas-L|Faslg|Tnfsf6|Tnlg1a|gld	Fas ligand (TNF superfamily, member 6)	protein-coding	0.480563959828171	1.19569901191244	0.502291926024951	0.494195236292438	0.482607376752375	1.07413069707704	1.15221296323698	1.30661340350989	1.60290805272448	0.355492113283769	0.853664850644233
Merged-chr4-86885850-2	chr4	86885771	86885971	+	681.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290543, intron 1 of 5)	intron (NM_001290543, intron 1 of 5)	11457.0	NM_139306	230379.0	Mm.45019	NM_139306	ENSMUSG00000038007	Acer2	2410116I05Rik|Asah3l|CRG-L1|maCER2	alkaline ceramidase 2	protein-coding	1.1627423683998	0.541692260121986	1.57940236232845	0.521344341243835	0.961425498129842	1.25653459120981	0.532811765501513	0.522913537167406	-0.772933762936902	0.647210695909066	0.984686016930887
Merged-chr7-16400188-4	chr7	16400098	16400298	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198631)	promoter-TSS (NM_198631)	-998.0	NM_198631	330474.0	Mm.333594	NM_198631	ENSMUSG00000059273	Zc3h4	Bwq1|Gm768|Kiaa1064-hp|mKIAA1064	zinc finger CCCH-type containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-86039061-2	chr15	86038961	86039161	+	817.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5284.0	NM_009886	12614.0	Mm.22680	NM_009886	ENSMUSG00000016028	Celsr1	Adgrc1|Crsh|Scy|crash	cadherin, EGF LAG seven-pass G-type receptor 1	protein-coding	-2.18233058068552	-2.15536956715525	-2.16352280018114	-2.04193253143548	-2.18043796738662	-2.15360272754651	-2.16167708693786	-2.16902129354933	-0.683654500252594	0.846597994014493	1
Merged-chr3-69156159-4	chr3	69156055	69156255	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_126533, intron 2 of 2)	B4A|SINE|B4	24922.0	NR_126533	381452.0	Mm.331067	NM_001243000	ENSMUSG00000094763	Gm1647	-	predicted gene 1647	ncRNA	5.86479651709431	6.13320293897836	6.28088636980162	5.95080423052083	5.91993599272138	5.44798928131751	5.01877097956957	5.74931177766211	-0.53266621617525	0.043784787978576	0.300360309621935
Merged-chr5-123889768-1	chr5	123889668	123889868	+	608.0	f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-9748.0	NM_175520	243270.0	Mm.33362	NM_175520	ENSMUSG00000049241	Hcar1	Gpr81	hydrocarboxylic acid receptor 1	protein-coding	-1.22315906685268	-1.19557143632602	-1.20673282037136	-0.55836125556573	-1.22265483704505	-1.19315271784257	-1.20420612767407	-1.21425999345206	-2.67891099987134	0.437057736398543	1
Merged-chr11-29308324-4	chr11	29308215	29308415	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	-61043.0	NM_025740	216618.0	Mm.128663	NM_025740	ENSMUSG00000020462	Cfap36	2300003H10|4931428D14Rik|Ccdc104	cilia and flagella associated protein 36	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-26360527-4	chr15	26360440	26360640	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310774, intron 2 of 2)	intron (NM_001310774, intron 2 of 2)	51492.0	NM_001310774	211147.0	Mm.54257	NM_177597	ENSMUSG00000022269	March11	9630025C22	membrane-associated ring finger (C3HC4) 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-5663928-1	chr18	5663828	5664028	+	761.0	f1_balb.idr	intron (NM_001360981, intron 2 of 8)	intron (NM_001360981, intron 2 of 8)	71281.0	NM_001360981	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	-0.662826441749988	-1.00555184936033	-1.01675512286785	-1.01992432642343	-0.654846858003193	-1.00312405325568	-1.01421894731451	-1.01959449741028	0.0418081237259606	0.989738874530268	1
Merged-chr18-23872106-2	chr18	23872006	23872206	+	672.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162941, intron 5 of 7)	intron (NM_001162941, intron 5 of 7)	68136.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-57778521-2	chr11	57778445	57778645	+	792.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_134189, intron 8 of 11)	intron (NM_134189, intron 8 of 11)	22922.0	NR_131042	76516.0	Mm.28485	NR_131042	ENSMUSG00000087165	2010001A14Rik	-	RIKEN cDNA 2010001A14 gene	ncRNA	2.17684463234699	3.02991245176576	2.73426973768308	2.93327552207688	2.5433523922142	2.10141468191924	2.37753775658675	3.29620835820196	-0.157356552622033	0.835846110505336	0.998431161219273
Merged-chr15-73149796-4	chr15	73149699	73149899	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153178, intron 1 of 18)	intron (NM_153178, intron 1 of 18)	35148.0	NM_153178	239528.0	Mm.23095	NM_153178	ENSMUSG00000036698	Ago2	1110029L17Rik|2310051F07Rik|AI225898|AL022874|AW546247|Eif2c2|Gerp95|Gm10365|mKIAA4215	argonaute RISC catalytic subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-111282480-4	chr11	111282390	111282590	+	771.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	216326.0	NM_008425	16518.0	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding	0.970040314154545	0.495940207712919	0.487300293242907	0.480602133775051	1.23576998004094	0.497881508119785	1.09592782837365	1.04951252989667	2.05039322523468	0.24485650042275	1
Merged-chr5-148494359-2	chr5	148494219	148494419	+	849.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57354.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	0.207929603573537	0.322851468395823	0.380924359659869	-0.109221381095476	-0.112963586559502	-0.102239185605668	-0.105773274527499	-0.108755321893502	-3.76619915995177	0.102666958888109	1
Merged-chr2-26970541-2	chr2	26970441	26970641	+	576.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	-2875.0	NM_001290464	279028.0	Mm.330084	NM_001001322	ENSMUSG00000014852	Adamts13	ADAM-TS13|ADAMTS-13|Gm710|vWF-CP	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-21752209-2	chr13	21752109	21752309	+	642.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1656.0	NM_178211	319160.0	Mm.255646	NM_178211	ENSMUSG00000064288	Hist1h4k	-	histone cluster 1, H4k	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-51367489-4	chr11	51367397	51367597	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153393, intron 2 of 28)	MLT1C|LTR|ERVL-MaLR	77577.0	NM_153393	237759.0	Mm.154093	NM_153393	ENSMUSG00000063564	Col23a1	2810458L13Rik|AI429655	collagen, type XXIII, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-44812689-3	chr16	44812642	44812842	+	757.733337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7986.0	NM_207244	239849.0	Mm.445045	NM_207244	ENSMUSG00000062082	Cd200r4	F630107N04Rik|MCD200RLa	CD200 receptor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-74022950-2	chr13	74022850	74023050	+	645.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_182839, intron 2 of 3)	intron (NM_182839, intron 2 of 3)	13531.0	NM_182839	72948.0	Mm.39752	NM_182839	ENSMUSG00000021573	Tppp	2900041A09Rik|AI849835	tubulin polymerization promoting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128758338-1	chr2	128758238	128758438	+	595.0	f1_balb.idr	intron (NM_008587, intron 6 of 18)	B3A|SINE|B2	59423.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-111732187-4	chr8	111732076	111732276	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001198839)	promoter-TSS (NM_001198839)	-40.0	NM_001198839	12927.0	Mm.3758	NM_009954	ENSMUSG00000031955	Bcar1	AI385681|Cas|Crkas	breast cancer anti-estrogen resistance 1	protein-coding	4.51623622929082	4.59016410863315	4.5487656552133	4.42983838195853	4.76271368653536	4.44798053627952	4.84968179994801	4.71715100885489	0.232124023616258	0.509087604749346	0.944151857241754
Merged-chr1-120603018-2	chr1	120602918	120603118	+	775.5	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010133, exon 1 of 2)	5' UTR (NM_010133, exon 1 of 2)	531.0	NM_010133	13798.0	Mm.2657	NM_010133	ENSMUSG00000058665	En1	En-1|Mo-en.1|engrailed-1	engrailed 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-184535163-2	chr1	184535063	184535263	+	636.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_040472, intron 2 of 5)	intron (NR_040472, intron 2 of 5)	22528.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-113531625-4	chr6	113531523	113531723	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175101)	promoter-TSS (NM_175101)	15.0	NM_175101	66087.0	Mm.275989	NM_175101	ENSMUSG00000030286	Emc3	0610039A15Rik|AI225901|AW260416|Pob|Tmem111	ER membrane protein complex subunit 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-43529265-5	chr11	43529113	43529313	+	790.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045530, intron 1 of 5)	CpG	464.0	NM_001045530	380694.0	Mm.247595	NM_001045530	ENSMUSG00000044707	Ccnjl	Gm877	cyclin J-like	protein-coding	0.972762600526177	0.717746132169085	0.69440915864255	0.934869845549851	0.983153471623362	0.529120114445974	1.09296540429002	0.514926780652637	-0.121983405952811	0.938405307497648	1
Merged-chr7-45588414-2	chr7	45588314	45588514	+	962.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001243052, intron 9 of 10)	intron (NM_001243052, intron 9 of 10)	-13238.0	NR_038165	71661.0	Mm.439894	NR_038165	ENSMUSG00000109644	0610005C13Rik	AI182092	RIKEN cDNA 0610005C13 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-78263390-3	chr11	78263310	78263510	+	899.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001002004, intron 2 of 38)	intron (NM_001002004, intron 2 of 38)	1656.0	NM_001002004	72503.0	Mm.237103	NM_001002004	ENSMUSG00000010277	2610507B11Rik	AU022687|D11Bhm178e|D11Bhm179e|E1|Kiaa0100|mKIAA0100	RIKEN cDNA 2610507B11 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-35983688-4	chr12	35983574	35983774	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9251.0	NM_011783	23795.0	Mm.7244	NM_011783	ENSMUSG00000020581	Agr2	Agr2h|Gob-4|HAG-2|XAG-2|mAG-2	anterior gradient 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-54439173-3	chr11	54439043	54439243	+	847.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173753, intron 1 of 17)	intron (NM_173753, intron 1 of 17)	964.0	NM_173753	216742.0	Mm.34087	NM_173753	ENSMUSG00000035992	Fnip1	A730024A03Rik|AI838773|AW557298	folliculin interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-26504478-2	chr2	26504378	26504578	+	834.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008714)	promoter-TSS (NM_008714)	551.0	NR_132655	102639736.0		NR_132655		Gm35978	-	predicted gene, 35978	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-61661007-4	chr11	61660865	61661065	+	865.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027817, intron 2 of 4)	intron (NM_027817, intron 2 of 4)	7644.0	NM_027817	71520.0	Mm.202760	NM_027817	ENSMUSG00000004837	Grap	8430435N19Rik|BB233594	GRB2-related adaptor protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-9107559-4	chr13	9107467	9107667	+	973.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172585, intron 1 of 17)	intron (NM_172585, intron 1 of 17)	13686.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-117801278-1	chr2	117801178	117801378	+	838.0	f1_c57bl6.idr	Intergenic	Intergenic	11524.0	NR_126427	100504728.0	Mm.413174	NR_126427		Gm13985	-	predicted gene 13985	ncRNA	-0.492370040471106	-0.740312559603737	-0.743323929084442	-0.745639288131008	-0.748899099060366	-0.252540318559983	-0.567380362123076	-0.74523530816252	1.36009384973575	0.627523494213109	1
Merged-chr13-106784684-2	chr13	106784630	106784830	+	569.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	152228.0	NM_001360897	76582.0	Mm.132208	NM_029665	ENSMUSG00000042590	Ipo11	1700081H05Rik|2510001A17Rik|AI314624|AW555235|E330021B14Rik|Ranbp11	importin 11	protein-coding	-0.0480590232396786	-0.168592005535709	0.362582980509448	0.22330487939872	0.0736833587287909	-0.167649416171936	-0.171843776399952	-0.175406906829249	-2.06062053805605	0.366480284241327	1
Merged-chr17-33719542-2	chr17	33719440	33719640	+	865.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145486)	promoter-TSS (NM_145486)	-863.0	NR_045522	224703.0	Mm.311439	NM_145486	ENSMUSG00000079557	March2	9530046H09Rik|MARCH-II	membrane-associated ring finger (C3HC4) 2	protein-coding	0.373104559101215	0.400377518240082	1.11675375818705	1.06897797900753	1.16623298884203	0.402360554264638	0.393489269658438	0.569800065898162	-0.544101173338447	0.765902536683034	1
Merged-chr19-11777025-2	chr19	11776925	11777125	+	607.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_152220)	TTS (NM_152220)	6610.0	NM_025606	94063.0	Mm.203928	NM_025606	ENSMUSG00000024683	Mrpl16	2310039D06Rik	mitochondrial ribosomal protein L16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-4384691-2	chr10	4384591	4384791	+	934.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033466, intron 1 of 2)	B1_Mm|SINE|Alu	2784.0	NM_001359811	381990.0	Mm.262466	NM_001033466	ENSMUSG00000075327	Zbtb2	Gm1103	zinc finger and BTB domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-94615297-2	chr16	94615197	94615397	+	801.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113389, intron 2 of 11)	MTD|LTR|ERVL-MaLR	3878.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69558849-4	chr11	69558756	69558956	+	830.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007911, intron 1 of 4)	intron (NM_007911, intron 1 of 4)	1381.0	NM_007911	13643.0	Mm.249637	NM_007911	ENSMUSG00000003934	Efnb3	EFL-6|ELF-3|Elk-L3|Epl8|LERK-8|NLERK-2	ephrin B3	protein-coding	0.924230361032609	1.21929031877232	1.77760379969432	1.72300762258817	1.64259097982499	2.07600782955813	0.966907210123955	1.61714793537723	0.560458503622855	0.654937566927069	0.988005984240273
Merged-chr6-145291555-4	chr6	145291458	145291658	+	976.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41006.0	NR_045598	100039495.0	Mm.121014	NR_045598	ENSMUSG00000086013	Gm15706	-	predicted gene 15706	ncRNA	1.43126700610257	1.14044062262093	0.731660536590271	0.722147283012446	1.35575246920227	1.55561881289519	0.734360365068695	1.33066410302994	0.9546946704221	0.519491246178702	0.947641799425091
Merged-chr18-76930042-4	chr18	76929935	76930135	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025409)	promoter-TSS (NM_025409)	8.0	NM_025409	66191.0	Mm.28593	NM_025409	ENSMUSG00000090000	Ier3ip1	1110057H19Rik|AI644142|AL022842|AL022863|AV026606	immediate early response 3 interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-136678240-2	chr1	136678140	136678340	+	602.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-5156.0	NR_045324	100503460.0	Mm.30630	NR_045324	ENSMUSG00000097113	Gm19705	-	predicted gene, 19705	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-130280249-2	chr10	130280149	130280349	+	758.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007501)	promoter-TSS (NM_007501)	5.0	NM_001329490	11923.0	Mm.10695	NM_007501	ENSMUSG00000048015	Neurod4	AI846749|ATH-3|Atoh3|MATH-3|Math3|bHLHa4	neurogenic differentiation 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-76215614-3	chr13	76215527	76215727	+	828.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER20|DNA|hAT-Charlie	116893.0	NM_001081352	218343.0	Mm.277964	NM_001081352	ENSMUSG00000033991	Ttc37	-	tetratricopeptide repeat domain 37	protein-coding	1.32879231710918	1.9644269065378	1.8903677700983	0.974218726006808	2.11363613462074	2.48444955830779	1.24987351889938	0.977590336263621	0.707012899632366	0.560583707665976	0.960350977191929
Merged-chr8-120116292-4	chr8	120116218	120116418	+	893.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172286, intron 1 of 12)	intron (NM_172286, intron 1 of 12)	2166.0	NM_001163761	234797.0	Mm.101958	NM_172286	ENSMUSG00000031824	6430548M08Rik	AW049007|Kiaa0513|mKIAA0513	RIKEN cDNA 6430548M08 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-52634555-4	chr3	52634474	52634674	+	979.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-105150.0	NR_038079	329639.0	Mm.131245	NR_038079	ENSMUSG00000102785	Gm2447	100039832|A530017F20	predicted gene 2447	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81192707-4	chr10	81192616	81192816	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007828, exon 8 of 8)	exon (NM_007828, exon 8 of 8)	-1975.0	NR_015477	69678.0	Mm.81562	NR_015477		Atcayos	2310050B05Rik	ataxia, cerebellar, Cayman type, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-53137555-4	chr15	53137436	53137636	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010162, intron 1 of 10)	L2c|LINE|L2	208647.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32318112-3	chr2	32318012	32318212	+	678.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029811)	promoter-TSS (NR_029811)	-153.0	NR_128563	104795665.0		NR_128563	ENSMUSG00000092765	Gm23363	Mir3154|mir-3154|mmu-mir-3154	predicted gene, 23363	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-66858393-1	chr4	66858293	66858493	+	576.0	f0_balb.idr	Intergenic	Intergenic	30842.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-161482392-4	chr1	161482271	161482471	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12286.0	NM_183391	240873.0	Mm.276823	NM_183391	ENSMUSG00000066755	Tnfsf18	Gitrl|Tnlg2a	tumor necrosis factor (ligand) superfamily, member 18	protein-coding	4.70942760685866	4.00958672216573	4.39242886883494	4.60249921304079	4.14827963400157	5.19937509398732	3.18183107077207	4.62392466995549	0.0135732875713118	0.976797046085666	0.998431161219273
Merged-chr4-43980211-2	chr4	43980111	43980311	+	829.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur2|SINE|Alu	-3293.0	NM_001002787	442829.0	Mm.348215	NM_001002787	ENSMUSG00000070999	Ccin	4933417A14Rik	calicin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-38528103-4	chr15	38527985	38528185	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2-int|LTR|ERVL-MaLR	-8819.0	NM_018745	54375.0	Mm.250214	NM_018745	ENSMUSG00000037458	Azin1	1700085L02Rik|AZI|Oazi|Oazin	antizyme inhibitor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122650069-2	chr5	122649969	122650169	+	629.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001284402)	promoter-TSS (NM_001284402)	-355.0	NM_001284402	18439.0	Mm.42026	NM_011027	ENSMUSG00000029468	P2rx7	AI467586|P2X(7)|P2X7R	purinergic receptor P2X, ligand-gated ion channel, 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-27703780-2	chr15	27703680	27703880	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22238.0	NM_001242423	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-38071229-3	chr7	38071126	38071326	+	978.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36264.0	NM_007633	12447.0	Mm.16110	NM_007633	ENSMUSG00000002068	Ccne1	AW538188|CycE1	cyclin E1	protein-coding	1.79118764804222	2.28995965572216	3.03827981628975	1.37472589648754	3.62392132078768	4.36442338180509	3.69401273289527	2.31662576963349	2.36071672334481	0.00262152481770186	0.0410614291942388
Merged-chr17-3157557-3	chr17	3157473	3157673	+	827.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134123, intron 3 of 19)	intron (NM_134123, intron 3 of 19)	42601.0	NM_134123	106583.0	Mm.124373	NM_134123	ENSMUSG00000046201	Scaf8	A630086M08Rik|A930036P18Rik|AA408306|AI447644|AI448652|AU015035|Rbm16|mKIAA1116	SR-related CTD-associated factor 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46804281-4	chr8	46804175	46804375	+	900.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152560, intron 2 of 7)	intron (NR_152560, intron 2 of 7)	64530.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127146542-2	chr7	127146442	127146642	+	668.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-8719.0	NM_001037810	20737.0	Mm.283714	NM_009259	ENSMUSG00000051457	Spn	A630014B01Rik|Cd43|Galgp|Ly-48|Ly48	sialophorin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171037109-3	chr1	171036981	171037181	+	911.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	tRNA-Asp-GAY|tRNA|tRNA	18155.0	NM_144559	246256.0	Mm.251254	NM_144559	ENSMUSG00000059089	Fcgr4	4833442P21Rik|CD16-2|FcgRIV|FcgammaRIV|Fcgr3a|Fcrl3	Fc receptor, IgG, low affinity IV	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-181459985-4	chr2	181459930	181460130	+	817.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028125)	promoter-TSS (NM_028125)	-604.0	NM_028125	72147.0	Mm.486504	NM_027656	ENSMUSG00000027583	Zbtb46	2610019F01Rik|4933406L05Rik|BZEL|Btbd4	zinc finger and BTB domain containing 46	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-79520123-4	chr3	79520049	79520249	+	988.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162999, intron 1 of 16)	intron (NM_001162999, intron 1 of 16)	47530.0	NM_001162999	329679.0	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-155179230-4	chr4	155179152	155179352	+	692.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011385, intron 1 of 6)	intron (NM_011385, intron 1 of 6)	43283.0	NM_011385	20481.0	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-34195531-2	chr19	34195431	34195631	+	905.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360718, intron 1 of 10)	URR1A|DNA|hAT-Charlie	2597.0	NM_001360718	76630.0	Mm.130952	NM_029682	ENSMUSG00000024776	Stambpl1	1700095N21Rik|8230401J17Rik|ALMalpha|AMSH-FP	STAM binding protein like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6452371-4	chr19	6452259	6452459	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205234, intron 5 of 22)	intron (NM_001205234, intron 5 of 22)	33621.0	NM_001205234	18190.0	Mm.329616	NM_020253	ENSMUSG00000033768	Nrxn2	6430591O13Rik|mKIAA0921	neurexin II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-174354857-4	chr1	174354733	174354933	+	837.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14086.0	NM_207137	258238.0	Mm.377274	NM_207137	ENSMUSG00000066672	Olfr417	GA_x5J8B7W3B3M-312879-313274|GA_x6K02T2P20D-20787051-20786119|MOR267-11	olfactory receptor 417	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-108312736-4	chr5	108312611	108312811	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081234)	promoter-TSS (NM_001081234)	-214.0	NM_001081234	433931.0	Mm.319881	NM_001081234	ENSMUSG00000029263	Pigg	Gpi7	phosphatidylinositol glycan anchor biosynthesis, class G	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-25557007-1	chr4	25556907	25557107	+	942.0	f1_balb.idr	Intergenic	Lx|LINE|L1	242996.0	NM_010243	14348.0	Mm.39101	NM_010243	ENSMUSG00000055373	Fut9	AI746471|AU067636|mFUT9|mFuc-TIX	fucosyltransferase 9	protein-coding	-0.213523878800041	0.43581739533414	-0.018388249339338	-0.206897608921538	-0.212536722613554	0.447128376774865	-0.201780267938087	-0.206201607500642	-0.259904887735463	0.912809230796299	1
Merged-chr12-100200222-5	chr12	100200124	100200324	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001313934)	promoter-TSS (NM_001313934)	80.0	NM_001313934	12313.0	Mm.285993	NM_009790	ENSMUSG00000001175	Calm1	AI256814|AI327027|AI461935|AL024000|CaM|Calm|Cam1	calmodulin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-5780326-8	chr11	5780237	5780437	+	907.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_015577, exon 5 of 7)	non-coding (NR_015577, exon 5 of 7)	-8146.0	NM_001146309	13169.0	Mm.256925	NM_013810	ENSMUSG00000020476	Dbnl	Abp1|SH3P7|mAbp1	drebrin-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-105719687-2	chr3	105719587	105719787	+	685.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_175398, exon 2 of 2)	3' UTR (NM_175398, exon 2 of 2)	14229.0	NM_001163356	109050.0	Mm.212591	NM_175398	ENSMUSG00000048458	Fam212b	6530418L21Rik|inka2	family with sequence similarity 212, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-40807039-4	chr9	40806943	40807143	+	902.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5770.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	3.73338685398286	3.71270617656106	2.61522888000556	3.33320926846853	3.65636693379983	4.33517157716901	2.79250907577749	2.69925482622941	0.191506264058274	0.762504999508642	0.998431161219273
Merged-chr3-148221638-3	chr3	148221527	148221727	+	926.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	733008.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27347517-2	chr2	27347417	27347617	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_133905, intron 1 of 29)	intron (NR_133905, intron 1 of 29)	80091.0	NR_133905	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-58743551-4	chr1	58743452	58743652	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355056, intron 7 of 8)	intron (NM_001355056, intron 7 of 8)	13000.0	NM_001293805	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-8279489-3	chr15	8279419	8279619	+	767.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	110413.0	NM_001162906	73692.0	Mm.164436	NM_001162906	ENSMUSG00000039801	2410089E03Rik	4732468D17Rik|Hug|Jbts17|b2b012Clo	RIKEN cDNA 2410089E03 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-72217743-3	chr8	72217640	72217840	+	869.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14|LTR|ERV1	-1990.0	NM_026455	67922.0	Mm.28327	NM_026455	ENSMUSG00000003039	Fam32a	2510049I19Rik|AW822030|OTAG-12|Otag12	family with sequence similarity 32, member A	protein-coding	2.16044148292069	1.40892934169242	2.79119358565779	2.51691701055863	3.12382174550387	1.41794796470603	3.1313446954613	2.41912115015109	0.752986658128384	0.420834668459535	0.900322118218157
Merged-chr11-120479672-2	chr11	120479572	120479772	+	742.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008244, exon 16 of 22)	exon (NM_008244, exon 16 of 22)	-4965.0	NM_027204	56282.0	Mm.133851	NM_027204	ENSMUSG00000039640	Mrpl12	0610034O11Rik|1500031N16Rik|L12mt|MRP-L12|Rpml12	mitochondrial ribosomal protein L12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-129914216-4	chr5	129914123	129914323	+	983.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001359308)	TTS (NM_001359308)	5683.0	NM_026916	69034.0	Mm.211372	NM_026916	ENSMUSG00000095789	Nupr1l	1810010E01Rik|4930579G22Rik|Nupr2	nuclear protein transcriptional regulator 1 like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-155584370-3	chr2	155584296	155584496	+	874.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291111, intron 1 of 11)	ID_B1|SINE|B4	8414.0	NM_001291111	14854.0	Mm.252316	NM_008180	ENSMUSG00000027610	Gss	AI314904|GS-A/GS-B|GSH-S	glutathione synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-107113851-1	chr3	107113751	107113951	+	563.0	f1_balb.idr	3' UTR (NM_008417, exon 3 of 3)	3' UTR (NM_008417, exon 3 of 3)	12284.0	NM_008417	16490.0	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124262862-3	chr6	124262771	124262971	+	936.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31087.0	NM_001104642	232367.0	Mm.469872	NM_001104642	ENSMUSG00000072778	Vmn2r27	EG232367	vomeronasal 2, receptor27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-49602334-2	chr7	49602234	49602434	+	606.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175272, intron 36 of 37)	intron (NM_175272, intron 36 of 37)	34501.0	NM_001005232	13172.0	Mm.307176	NM_001005232	ENSMUSG00000030507	Dbx1	AI426026|Dbx	developing brain homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-145910105-2	chr6	145910005	145910205	+	567.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21768.0	NM_001310837	16651.0	Mm.49689	NM_010656	ENSMUSG00000030255	Sspn	Krag	sarcospan	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-105642040-3	chr7	105641820	105642020	+	745.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001360053)	TTS (NM_001360053)	1475.0	NM_001360054	14356.0	Mm.220330	NM_019502	ENSMUSG00000089847	Timm10b	Fxc1|Tim10b|Tim9b	translocase of inner mitochondrial membrane 10B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-126940067-4	chr6	126939955	126940155	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138594)	promoter-TSS (NM_138594)	89.0	NM_138594	28040.0	Mm.44228	NM_138594	ENSMUSG00000030347	D6Wsu163e	C12orf4	DNA segment, Chr 6, Wayne State University 163, expressed	protein-coding	2.50945372132133	2.95311513093037	3.80568873825122	3.36374771981222	2.53154203722002	3.45182872539727	2.30349001675481	2.22884760034528	-0.906758377005597	0.20506525618788	0.692299163936211
Merged-chr8-3441848-3	chr8	3441745	3441945	+	904.8666380000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133962, intron 9 of 19)	intron (NM_133962, intron 9 of 19)	25803.0	NM_026951	69129.0	Mm.45279	NM_026951	ENSMUSG00000069633	Pex11g	1810022F11Rik|1810049N02Rik|Pex11c|Pex11gamma	peroxisomal biogenesis factor 11 gamma	protein-coding	2.44985992296679	2.98182686079677	3.06609020815617	2.69750554014832	3.25623003081778	1.60462607549801	3.32242915764317	2.47389404692271	0.0519615235197103	0.946668298948495	0.998431161219273
Merged-chr16-11017988-4	chr16	11017868	11018068	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9070.0	NR_040518	100043147.0	Mm.489001	NR_040518	ENSMUSG00000097056	Gm4262	-	predicted gene 4262	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-150115972-1	chr5	150115872	150116072	+	616.0	f1_balb.idr	Intergenic	Intergenic	97297.0	NM_001289566	140498.0	Mm.444643	NM_080468	ENSMUSG00000053368	Rxfp2	Gpr106|Great|Lgr8	relaxin/insulin-like family peptide receptor 2	protein-coding	-0.0393586989708275	0.0246464283210806	-0.170464390967544	-0.174051266764816	-0.179113782689467	0.449799367174184	0.286809311079013	-0.173424915729746	2.06800252118328	0.36107351946739	1
Merged-chr1-74238712-2	chr1	74238612	74238812	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357387, intron 2 of 10)	PB1D11|SINE|Alu	2195.0	NM_029711	76709.0	Mm.337038	NM_029711	ENSMUSG00000006304	Arpc2	2210023N03Rik|34kDa|p34-Arc	actin related protein 2/3 complex, subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3847121-2	chr19	3847021	3847221	+	657.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4652.0	NM_001271496	12660.0	Mm.225505	NM_013490	ENSMUSG00000024843	Chka	CK|CK/EK-alpha|Chetk-alpha|Chk|ChoK|EK|EtnK-alpha	choline kinase alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-64091330-4	chr9	64091228	64091428	+	898.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	10567.0	NR_040743	76814.0	Mm.243771	NR_040743		Scarletltr	2600006L11Rik	Scarletltr, erythroid developmental long intergenic non-protein coding transcript	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-60361234-2	chr19	60361134	60361334	+	547.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	107070.0	NM_201615	226278.0	Mm.377241	NM_201615	ENSMUSG00000045052	Prlhr	Gm339|Gpr10|Gr3|Prrpr	prolactin releasing hormone receptor	protein-coding	0.154418886417057	1.06053199177066	0.170256302514216	0.346629671397859	0.457741136440021	0.855031917931156	0.171941381482711	0.165373601283464	-0.303536301889843	0.876595813731694	1
Merged-chr15-81020044-2	chr15	81019944	81020144	+	637.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001082536, intron 8 of 13)	intron (NM_001082536, intron 8 of 13)	42279.0	NM_134091	105835.0	Mm.274943	NM_134091	ENSMUSG00000042303	Sgsm3	1810012I01Rik|AI428557|BB175482|Cip85|R75178|RUSC3|Rutbc3	small G protein signaling modulator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-86439716-2	chr6	86439616	86439816	+	728.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001243741, intron 1 of 9)	B3A|SINE|B2	1070.0	NM_001243741	232196.0	Mm.404040	NM_146170	ENSMUSG00000046679	C87436	-	expressed sequence C87436	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3417459-2	chr12	3417359	3417559	+	578.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_030694, intron 1 of 2)	B1_Mm|SINE|Alu	9288.0	NR_030694	100043040.0	Mm.415417	NR_030694	ENSMUSG00000071456	1110002L01Rik	-	RIKEN cDNA 1110002L01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-91362270-4	chr9	91362139	91362339	+	784.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009573, intron 2 of 2)	intron (NM_009573, intron 2 of 2)	3560.0	NM_009573	22771.0	Mm.335350	NM_009573	ENSMUSG00000032368	Zic1	ZIC|ZNF201	zinc finger protein of the cerebellum 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-78430686-4	chr9	78430576	78430776	+	973.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_125721, exon 5 of 5)	non-coding (NR_125721, exon 5 of 5)	12561.0	NR_125721	214763.0	Mm.101559	NM_173386	ENSMUSG00000032344	Mb21d1	E330016A19Rik|cGAS	Mab-21 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-43772864-4	chr2	43772775	43772975	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301831, intron 1 of 14)	intron (NM_001301831, intron 1 of 14)	24051.0	NM_001301831	76117.0	Mm.217350	NM_153820	ENSMUSG00000049744	Arhgap15	5830480G12Rik	Rho GTPase activating protein 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-43475667-2	chr13	43475567	43475767	+	593.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019930, intron 1 of 13)	URR1B|DNA|hAT-Charlie	5306.0	NM_019930	56705.0	Mm.148781	NM_019930	ENSMUSG00000038546	Ranbp9	IBAP-1|Ibap1|RanBPM	RAN binding protein 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-36784806-3	chr16	36784660	36784860	+	843.8666380000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_021301, exon 1 of 22)	exon (NM_021301, exon 1 of 22)	202.0	NM_001145899	57738.0	Mm.281804	NM_021301	ENSMUSG00000022899	Slc15a2	8430408C16Rik|C78862|Pept2	solute carrier family 15 (H+/peptide transporter), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-73458026-3	chr2	73457924	73458124	+	853.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153138, intron 1 of 7)	MLT1K|LTR|ERVL-MaLR	-4135.0	NM_001289722	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-77000270-3	chr12	77000167	77000367	+	776.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38019.0	NM_001146176	17187.0	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-82686376-2	chr18	82686276	82686476	+	636.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177832, intron 1 of 29)	intron (NM_177832, intron 1 of 29)	6358.0	NM_177832	329002.0	Mm.34438	NM_177832	ENSMUSG00000041258	Zfp236	AI447957|Gm335	zinc finger protein 236	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-64716729-2	chr17	64716629	64716829	+	578.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008549, intron 16 of 21)	intron (NM_008549, intron 16 of 21)	-50382.0	NR_105051	101202683.0	Mm.393309	NR_105051		Dreh	-	down-regulated in hepatocellular carcinoma	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-177795193-2	chr1	177795093	177795293	+	643.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007422, intron 1 of 12)	intron (NM_007422, intron 1 of 12)	1316.0	NM_007422	11566.0	Mm.338021	NM_007422	ENSMUSG00000015961	Adss	AI314886|AS|Adss2	adenylosuccinate synthetase, non muscle	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-62121917-4	chr9	62121822	62122022	+	797.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_039595)	TTS (NR_039595)	672.0	NR_039595	100628602.0		NR_039595	ENSMUSG00000092696	Mir5133	mir-5133|mmu-mir-5133|mu-mir-5133	microRNA 5133	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122400838-4	chr5	122400741	122400941	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019824, intron 2 of 6)	intron (NM_019824, intron 2 of 6)	8963.0	NM_019824	56378.0	Mm.275942	NM_019824	ENSMUSG00000029465	Arpc3	1110006A04Rik|p21-ARC|p21-Ar|p21Arc	actin related protein 2/3 complex, subunit 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-128705884-4	chr7	128705748	128705948	+	818.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145955, intron 11 of 15)	intron (NM_145955, intron 11 of 15)	16978.0	NM_001346517	101490.0	Mm.490344	NM_178641	ENSMUSG00000042105	Inpp5f	5830435P03Rik|AI115354|AW561896|SAC2|cI-27|hSAC2|mKIAA0966	inositol polyphosphate-5-phosphatase F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-60501275-4	chr3	60501212	60501412	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001253710, exon 1 of 8)	5' UTR (NM_001253710, exon 1 of 8)	133.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-117328759-4	chr2	117328644	117328844	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011246, intron 2 of 16)	intron (NM_011246, intron 2 of 16)	14133.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-115564687-3	chr8	115564559	115564759	+	778.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	142235.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-143021957-4	chr7	143021854	143022054	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_110354, exon 5 of 5)	non-coding (NR_110354, exon 5 of 5)	16295.0	NM_001128081	27027.0	Mm.28172	NM_020286	ENSMUSG00000000244	Tspan32	AW208513|Art-1|BB235973|D7Wsu37e|Phemx|Tssc6	tetraspanin 32	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-31083207-2	chr6	31083107	31083307	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20114.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-17656628-2	chr10	17656528	17656728	+	563.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-66600.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-95849945-3	chr13	95849847	95850047	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027711, intron 1 of 35)	intron (NM_027711, intron 1 of 35)	41975.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	2.88690257566662	3.76695546814945	2.88132515962248	3.43955020544521	1.72303976523605	1.39983453485834	1.34882647540367	2.48040384438585	-2.940245070644	0.000606125498214205	0.0130953668563758
Merged-chr1-136655259-2	chr1	136655159	136655359	+	640.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28137.0	NR_045324	100503460.0	Mm.30630	NR_045324	ENSMUSG00000097113	Gm19705	-	predicted gene, 19705	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127573241-4	chr7	127573143	127573343	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026888)	promoter-TSS (NM_026888)	-105.0	NM_001360741	68961.0	Mm.274473	NM_026888	ENSMUSG00000030815	Phkg2	1500017I02Rik	phosphorylase kinase, gamma 2 (testis)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-88415645-2	chr10	88415545	88415745	+	562.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001004164, intron 5 of 20)	intron (NM_001004164, intron 5 of 20)	36233.0	NM_001004164	432486.0	Mm.335190	NM_001004164	ENSMUSG00000035311	Gnptab	EG432486|mKIAA1208	N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31177882-2	chr14	31177782	31177982	+	597.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_022656, intron 15 of 20)	intron (NM_022656, intron 15 of 20)	-9241.0	NM_138672	192187.0	Mm.220821	NM_138672	ENSMUSG00000042286	Stab1	FEEL-1|FELE-1|MFEEL-1|MS-1|STAB-1|mKIAA0246	stabilin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-7014301-2	chr19	7014201	7014401	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001362399, intron 4 of 14)	intron (NM_001362399, intron 4 of 14)	5168.0	NM_153795	108101.0	Mm.157591	NM_153795	ENSMUSG00000024965	Fermt3	C79673|Kindlin3	fermitin family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-86579679-1	chr4	86579579	86579779	+	618.0	f0_balb.idr	3' UTR (NM_173400, exon 17 of 17)	3' UTR (NM_173400, exon 17 of 17)	4006.0	NM_178376	68441.0	Mm.31178	NM_178376	ENSMUSG00000070934	Rraga	1300010C19Rik|AI255374|FIP-1|RAGA	Ras-related GTP binding A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-10495053-2	chr7	10494953	10495153	+	876.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009577, intron 1 of 3)	intron (NM_009577, intron 1 of 3)	328.0	NM_009577	22775.0	Mm.49441	NM_009577	ENSMUSG00000030393	Zik1	-	zinc finger protein interacting with K protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-104269457-4	chr9	104269354	104269554	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6524.0	NM_001163026	235567.0	Mm.217256	NM_001163026	ENSMUSG00000032560	Dnajc13	D030002L11Rik|Gm1124|RME-8|Rme8|mKIAA0678	DnaJ heat shock protein family (Hsp40) member C13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-80061083-3	chr12	80060988	80061188	+	775.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51925.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-147575861-1	chr5	147575761	147575961	+	689.0	f1_balb.idr	intron (NM_010228, intron 25 of 29)	intron (NM_010228, intron 25 of 29)	145705.0	NM_028291	72587.0	Mm.320469	NM_028291	ENSMUSG00000029647	Pan3	2700050F09Rik|A430027N15Rik|AU014670	PAN3 poly(A) specific ribonuclease subunit	protein-coding	-0.958702946955502	-0.943747419411416	-0.953525245573566	-0.66391732469075	-0.958224604081293	-0.760458240111231	-0.952645194106835	-0.659711042082136	0.648390730745749	0.826904897396522	1
Merged-chr5-99327732-1	chr5	99327632	99327832	+	745.0	f1_c57bl6.idr	intron (NR_030692, intron 3 of 3)	B3|SINE|B2	-74805.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	2.77591741741068	2.11277607160648	2.57459009644275	1.98167299850038	2.03987069332828	2.68711683965841	3.23418311941515	1.34612524235064	0.241411545584925	0.790786609839371	0.998431161219273
Merged-chr12-12270157-4	chr12	12270045	12270245	+	883.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146119, intron 1 of 11)	MTD|LTR|ERVL-MaLR	8006.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-128168156-4	chr8	128168066	128168266	+	956.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	110059.0	NR_105822	102465212.0		NR_105822	ENSMUSG00000099326	Mir21c	Gm28013|mmu-mir-21c	microRNA 21c	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122726284-2	chr5	122726184	122726384	+	721.958374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310718, intron 8 of 10)	intron (NM_001310718, intron 8 of 10)	18740.0	NM_001310718	18438.0	Mm.290884	NM_011026	ENSMUSG00000029470	P2rx4	AI504491|AW555605|D5Ertd444e|P2X4	purinergic receptor P2X, ligand-gated ion channel 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-103493030-4	chr12	103492926	103493126	+	847.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35803.0	NM_145449	217845.0	Mm.298416	NM_145449	ENSMUSG00000021208	Ifi27l2b	1810023F06Rik|ISG12(b2)	interferon, alpha-inducible protein 27 like 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-112251633-4	chr13	112251513	112251713	+	998.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36838.0	NM_001168403	77318.0	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88510152-4	chr3	88510048	88510248	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6796.0	NM_001002011	16905.0	Mm.243014	NM_019390	ENSMUSG00000028063	Lmna	Dhe	lamin A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44134708-4	chr9	44134595	44134795	+	798.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023061)	promoter-TSS (NM_023061)	37.0	NM_001359530	84004.0	Mm.275003	NM_023061	ENSMUSG00000032135	Mcam	1-gicerin|AV025631|CD146|CD149|Muc18|s-endo|s-gicerin	melanoma cell adhesion molecule	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-64530096-3	chr1	64529960	64530160	+	833.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2744.0	NM_009952	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-148454305-3	chr2	148454212	148454412	+	956.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10777.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-34711241-2	chr1	34711141	34711341	+	777.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-75031.0	NR_033627	241051.0	Mm.282827	NR_033627		AA619741	-	PHD finger protein 19 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126779600-3	chr8	126779507	126779707	+	914.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69413.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-44480334-4	chr13	44480239	44480439	+	863.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40612.0	NR_045489	69491.0	Mm.392410	NR_045489	ENSMUSG00000098144	1700029N11Rik	-	RIKEN cDNA 1700029N11 gene	ncRNA	3.88780931513792	2.65637420318554	3.72294336570822	3.49327874488413	3.20308270768633	2.04781289698641	3.68640033474661	2.77761761250231	-0.72637087883394	0.270449940362226	0.773417332874928
Merged-chr7-110205055-4	chr7	110204969	110205169	+	787.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M3|LINE|L1	-16634.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-65248046-1	chr5	65247946	65248146	+	563.0	f1_c57bl6.idr	intron (NM_001359879, intron 28 of 35)	B4A|SINE|B4	48350.0	NM_153391	213081.0	Mm.127550	NM_153391	ENSMUSG00000037890	Wdr19	C330027H04Rik|D330023L08Rik|DYF2|Ift144|PWDMP|mKIAA1638	WD repeat domain 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-67477724-1	chr4	67477624	67477824	+	590.0	f0_balb.idr	Intergenic	Intergenic	650173.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131135306-1	chr1	131135206	131135406	+	767.0	f0_balb.idr	intron (NM_145508, intron 2 of 2)	intron (NM_145508, intron 2 of 2)	2928.0	NM_145508	226419.0	Mm.39299	NM_145508	ENSMUSG00000016526	Dyrk3	BC006704	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-26977694-3	chr8	26977589	26977789	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001101502, intron 1 of 1)	CpG	353.0	NM_001110508	353310.0	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-121421339-4	chr11	121421252	121421452	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181420)	promoter-TSS (NM_181420)	-21.0	NM_181420	238024.0	Mm.117394	NM_181420	ENSMUSG00000039253	Fn3krp	FN3K-RP	fructosamine 3 kinase related protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-31277660-2	chr9	31277560	31277760	+	685.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	6259.0	NM_001101597	638580.0	Mm.373655	NM_001101597		Gm7244	EG638580	predicted gene 7244	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-85246745-2	chr2	85246621	85246821	+	938.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50022.0	NM_001033346	241528.0	Mm.291095	NM_001033346	ENSMUSG00000075224	Lrrc55	A330097E02Rik|Gm351	leucine rich repeat containing 55	protein-coding	1.23171036754872	1.52307600437957	1.8146114390912	0.933567880672832	1.67654098472333	1.19091825837227	1.72705246989968	1.296188387913	0.26301573622187	0.829070536053695	0.998431161219273
Merged-chr18-45941445-1	chr18	45941345	45941545	+	717.0	f1_balb.idr	intron (NR_040342, intron 2 of 3)	intron (NR_040342, intron 2 of 3)	103815.0	NR_040342	107003.0	Mm.395148	NR_040342		A330093E20Rik	AU043608	RIKEN cDNA A330093E20 gene	ncRNA	0.583254240368496	0.443486251900821	0.432779773995315	0.620357203642518	0.737500664324018	0.445877024865798	1.4153062839029	1.43405070049538	3.1441230483209	0.0682420079819432	0.392092493930074
Merged-chr2-130728962-2	chr2	130728849	130729049	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029432, intron 28 of 36)	intron (NM_029432, intron 28 of 36)	-31430.0	NM_001081162	269356.0	Mm.441391	NM_001081162	ENSMUSG00000074796	Slc4a11	AI503023|BTR1|NaBC1	solute carrier family 4, sodium bicarbonate transporter-like, member 11	protein-coding	0.528117081480402	1.46713625845501	0.790602750967404	0.547891713599074	1.61423899552054	1.70108750653324	0.562730870808642	0.549931213093328	1.22915413966685	0.45494205682066	0.919231188570946
Merged-chr9-8134490-2	chr9	8134421	8134621	+	946.375	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001045524)	promoter-TSS (NM_001045524)	-227.0	NM_001045524	234915.0	Mm.101341	NM_001045524	ENSMUSG00000040729	Cep126	mKIAA1377	centrosomal protein 126	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-24365466-3	chr2	24365339	24365539	+	765.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-2236.0	NM_001355231	215632.0	Mm.490434	NM_177611	ENSMUSG00000026979	Psd4	BC046518|EFA6B	pleckstrin and Sec7 domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36940538-4	chr1	36940438	36940638	+	867.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1011.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115072288-4	chr5	115072194	115072394	+	968.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029012, intron 2 of 10)	RSINE1|SINE|B4	35668.0	NM_001271591	100502825.0	Mm.361657	NM_001271590		Rpl37rt	EyeLinc4|Gm13826	ribosomal protein L37, retrotransposed	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-24638647-3	chr13	24638527	24638727	+	754.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029679)	promoter-TSS (NM_029679)	-21.0	NM_001080381	193385.0	Mm.217319	NM_029679	ENSMUSG00000036006	Ripor2	Fam65b	RHO family interacting cell polarization regulator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-60518883-2	chr9	60518783	60518983	+	659.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7848.0	NM_001040426	207596.0	Mm.28791	NM_172444	ENSMUSG00000032289	Thsd4	ADAMTSL-6|ADAMTSL6|AI585901|Adamtsl4|B230114P05Rik	thrombospondin, type I, domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-55449997-2	chr11	55449897	55450097	+	881.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009720, intron 3 of 3)	intron (NM_009720, intron 3 of 3)	11211.0	NM_009720	11927.0	Mm.217759	NM_009720	ENSMUSG00000018585	Atox1	AI256639|Atx1	antioxidant 1 copper chaperone	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-38608867-1	chr9	38608767	38608967	+	598.0	f1_balb.idr	Intergenic	Intergenic	2400.0	NM_146786	258782.0	Mm.390144	NM_146786	ENSMUSG00000047050	Olfr914	MOR165-7	olfactory receptor 914	protein-coding	-1.8429182434137	-1.8129848525291	-1.82203695700074	-1.54461076807193	-1.84081697472045	-1.81102322372834	-1.81998775896484	-1.82814164409203	-1.43114970378833	0.684630132144154	1
Merged-chr3-144453855-4	chr3	144453743	144453943	+	885.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355234, intron 3 of 6)	intron (NM_001355234, intron 3 of 6)	116373.0	NM_011828	23908.0	Mm.12863	NM_011828	ENSMUSG00000040151	Hs2st1	2OST|AW214369|Hs2st|mKIAA0448	heparan sulfate 2-O-sulfotransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45433799-2	chr7	45433699	45433899	+	782.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011304, intron 1 of 14)	intron (NM_011304, intron 1 of 14)	665.0	NM_011304	20174.0	Mm.34410	NM_011304	ENSMUSG00000003868	Ruvbl2	mp47|p47	RuvB-like protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24426628-4	chr17	24426527	24426727	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010023)	promoter-TSS (NM_010023)	-56.0	NM_010023	13177.0	Mm.291743	NM_010023	ENSMUSG00000024132	Eci1	Dci|eci	enoyl-Coenzyme A delta isomerase 1	protein-coding	3.9955180646118	3.21798356786956	3.72409593755482	4.43412048446971	4.49115511217048	4.11360664086122	3.75350007271896	4.61600615743822	0.494655552399387	0.29274034719009	0.797403969786596
Merged-chr17-79967424-2	chr17	79967324	79967524	+	599.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20B5_MM|LTR|ERVK	-71301.0	NM_001286647	56298.0	Mm.175403	NM_019717	ENSMUSG00000059811	Atl2	2010110I21Rik|AA407293|AV334690|Aip-2|Arl6ip2	atlastin GTPase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-82867871-2	chr8	82867793	82867993	+	738.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_177378, intron 1 of 6)	MTD|LTR|ERVL-MaLR	4537.0	NM_177378	330812.0	Mm.491438	NM_177378	ENSMUSG00000047747	Rnf150	A630007N06Rik|C030044C12Rik|Greul5|mKIAA1214	ring finger protein 150	protein-coding	-0.199393665215846	0.165018665650537	-0.189900156588052	-0.193471412349201	-0.054106971165374	-0.184221712760708	-0.0103035692204792	0.522813837235424	1.88013496976184	0.409158505483592	1
Merged-chr11-80210546-2	chr11	80210446	80210646	+	840.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163355, intron 1 of 19)	intron (NM_001163355, intron 1 of 19)	1491.0	NM_021536	59040.0	Mm.489674	NM_021536	ENSMUSG00000017686	Rhot1	2210403N23Rik|AA415293|AF244542|AI834919|Arht1|C430039G08Rik|Miro1	ras homolog family member T1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-31856616-2	chr17	31856525	31856725	+	854.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010831)	promoter-TSS (NM_010831)	-821.0	NM_010831	17691.0	Mm.290941	NM_010831	ENSMUSG00000024042	Sik1	Hrt-20|Msk|Sik|Sik-1|Snf1lk	salt inducible kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120648148-3	chr11	120648000	120648200	+	772.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001204820, exon 1 of 2)	5' UTR (NM_001204820, exon 1 of 2)	237.0	NM_026751	68515.0	Mm.194594	NM_026751	ENSMUSG00000025141	Myadml2	1110012N22Rik	myeloid-associated differentiation marker-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25681069-4	chr7	25680944	25681144	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172148)	promoter-TSS (NM_172148)	-114.0	NM_172148	232987.0	Mm.22849	NM_172148	ENSMUSG00000063439	B9d2	stumpy	B9 protein domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-45911395-3	chr13	45911286	45911486	+	925.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199304, intron 2 of 6)	intron (NM_001199304, intron 2 of 6)	53605.0	NM_001199304	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-141969929-2	chr1	141969829	141970029	+	639.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-1313527.0	NR_040604	75910.0	Mm.483845	NR_040604	ENSMUSG00000102368	4930590L20Rik	-	RIKEN cDNA 4930590L20 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-120567679-4	chr6	120567572	120567772	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045733, intron 2 of 3)	intron (NR_045733, intron 2 of 3)	12876.0	NR_045733	73505.0	Mm.416867	NR_045733		1700072O05Rik	-	RIKEN cDNA 1700072O05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-19494040-2	chr11	19493941	19494141	+	734.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	428766.0	NR_046037	74059.0	Mm.292321	NR_046037	ENSMUSG00000086025	4933406G16Rik	-	RIKEN cDNA 4933406G16 gene	ncRNA	1.64238899196811	0.795357648045625	1.42219997778884	1.48337541205521	0.928961071234488	0.798218836194564	0.991394209153461	1.49227218052843	-1.17764091161245	0.396413779196199	0.883280770607156
Merged-chr10-111421359-2	chr10	111421259	111421459	+	789.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-51868.0	NM_001358932	53605.0	Mm.290407	NM_015781	ENSMUSG00000058799	Nap1l1	AA407126|AI256722|D10Ertd68e|NAP-1	nucleosome assembly protein 1-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46789612-4	chr8	46789495	46789695	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152560, intron 1 of 7)	intron (NR_152560, intron 1 of 7)	49850.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-63560268-4	chr4	63560214	63560414	+	970.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144905)	promoter-TSS (NM_144905)	87.0	NM_144905	230279.0	Mm.41523	NM_144905	ENSMUSG00000045917	Tmem268	6330416G13Rik|AW492431|bM230C2.2	transmembrane protein 268	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-59426270-1	chr6	59426170	59426370	+	570.0	f1_balb.idr	promoter-TSS (NM_183183)	promoter-TSS (NM_183183)	20.0	NM_183183	243385.0	Mm.138080	NM_183183	ENSMUSG00000045441	Gprin3	C030038J10Rik|C730021L23	GPRIN family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-48969135-2	chr15	48969035	48969235	+	632.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-177146.0	NM_001081391	239420.0	Mm.309363	NM_001081391	ENSMUSG00000022311	Csmd3	4930500N14Rik|mKIAA1894	CUB and Sushi multiple domains 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-107314602-2	chr11	107314502	107314702	+	713.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 4 of 9)	ID_B1|SINE|B4	-125221.0	NM_001161329	68979.0	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-89009126-2	chr6	89009026	89009226	+	670.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-86984.0	NR_134978	232217.0	Mm.281744	NM_175017	ENSMUSG00000055403	4933427D06Rik	-	RIKEN cDNA 4933427D06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135440277-4	chr4	135440177	135440377	+	939.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-6472.0	NM_022980	53902.0	Mm.331970	NM_022980	ENSMUSG00000059713	Rcan3	AU041093|Csp3|Dscr1l2	regulator of calcineurin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80834584-2	chr7	80834467	80834667	+	909.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-27541.0	NM_009553	22691.0	Mm.358645	NM_009553	ENSMUSG00000038797	Zscan2	Zfp-29|Zfp29	zinc finger and SCAN domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-21529330-2	chr5	21529230	21529430	+	579.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199632, intron 12 of 20)	intron (NM_001199632, intron 12 of 20)	-14197.0	NM_028977	74511.0	Mm.439963	NM_028977	ENSMUSG00000039883	Lrrc17	37kDa|4833425M04Rik|6130400C22Rik|P37nb	leucine rich repeat containing 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-90232998-4	chr9	90232906	90233106	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 3 of 12)	intron (NM_194334, intron 3 of 12)	37763.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-53187375-3	chr5	53187277	53187477	+	893.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172710, intron 3 of 23)	UCON28b|Unknown|Unknown	26075.0	NM_172710	231238.0	Mm.235020	NM_172710	ENSMUSG00000029189	Sel1l3	2310045A20Rik|AI429585|mKIAA0746	sel-1 suppressor of lin-12-like 3 (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-88949933-2	chr11	88949817	88950017	+	820.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_029023, intron 2 of 12)	intron (NM_029023, intron 2 of 12)	5525.0	NM_029023	74617.0	Mm.34126	NM_029023	ENSMUSG00000000278	Scpep1	2410018F01Rik|4833411K15Rik|AI957256|Risc	serine carboxypeptidase 1	protein-coding	-0.154040840931878	-0.503907098567717	-0.507411373247013	-0.352007959678487	-0.513900283849407	-0.503115371439125	0.0528023245847064	-0.509635812565276	0.337189354339998	0.897924792148733	1
Merged-chr5-139452764-2	chr5	139452664	139452864	+	799.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028469, intron 2 of 4)	intron (NM_028469, intron 2 of 4)	7770.0	NM_028469	73212.0	Mm.84294	NM_028469	ENSMUSG00000053553	3110082I17Rik	AW411904	RIKEN cDNA 3110082I17 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-77602776-4	chr16	77602659	77602859	+	910.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3102.0	NR_029728	387246.0		NR_029728	ENSMUSG00000065557	Mirlet7c-1	Mirnlet7c|Mirnlet7c-1|let-7c-1	microRNA let7c-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-63996696-3	chr15	63996598	63996798	+	958.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144846, intron 1 of 11)	intron (NM_144846, intron 1 of 11)	1368.0	NM_001360035	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-96163964-4	chr10	96163839	96164039	+	911.30835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62268.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41982972-4	chr19	41982864	41983064	+	971.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145500, intron 1 of 2)	MIR3|SINE|MIR	1201.0	NM_145500	226122.0	Mm.22948	NM_145500	ENSMUSG00000025171	Ubtd1	BC016129	ubiquitin domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-119973519-2	chr9	119973419	119973619	+	634.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_153287, exon 4 of 5)	exon (NM_153287, exon 4 of 5)	9504.0	NM_001357560	215418.0	Mm.491094	NM_153287	ENSMUSG00000032515	Csrnp1	4931429D10Rik|Axud1|CSRNP-1|URAX1|taip-3	cysteine-serine-rich nuclear protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141539680-2	chr4	141539602	141539802	+	843.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-1105.0	NM_019763	56381.0	Mm.299906	NM_019763	ENSMUSG00000040761	Spen	Mint|mKIAA0929	spen family transcription repressor	protein-coding	0.743965495695703	1.41554585682837	0.780849296898162	2.07974866316048	1.10969154368109	1.42781692944756	0.78468117787839	1.7778142781616	-0.213333899192876	0.880981378897734	0.998431161219273
Merged-chr3-69658390-4	chr3	69658286	69658486	+	736.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR23|LTR|ERV1	-59426.0	NM_020026	26879.0	Mm.153710	NM_020026	ENSMUSG00000043300	B3galnt1	B3galt3|b3GT3	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-113120104-2	chr12	113120004	113120204	+	789.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_054081, intron 3 of 19)	intron (NM_054081, intron 3 of 19)	-20132.0	NM_024223	68337.0	Mm.133825	NM_024223	ENSMUSG00000006356	Crip2	0610010I23Rik|AW743261|C77570|CRP2|CRP4|Crp|ESP1|Hlp	cysteine rich protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153558628-4	chr2	153558544	153558744	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28673.0	NM_001134300	329540.0	Mm.50600	NM_001001986	ENSMUSG00000061411	Nol4l	4931410H15|8430427H17Rik|AI429157|Gm1636	nucleolar protein 4-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-183442293-1	chr1	183442193	183442393	+	633.5	f0_balb.idr	Intergenic	Intergenic	23045.0	NM_001308052	78772.0	Mm.29003	NM_030175	ENSMUSG00000053461	Hhipl2	4930507C10Rik|AW208802|Hhip3	hedgehog interacting protein-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-38280548-2	chr15	38280448	38280648	+	660.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19352.0	NM_001357677	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-74661657-4	chr1	74661562	74661762	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001014974)	promoter-TSS (NM_001014974)	-92.0	NM_001014974	67534.0	Mm.260714	NM_001014974	ENSMUSG00000033257	Ttll4	4632407P03Rik|AI451681|mKIAA0173	tubulin tyrosine ligase-like family, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-102034081-2	chr7	102033981	102034181	+	768.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029211, intron 4 of 8)	L2b|LINE|L2	-15926.0	NM_010531	16068.0	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	0.703746950052296	1.91943787307168	0.528524810638173	0.945500046160687	0.711078206063247	1.9385419505093	0.532392065272666	0.517190245528818	-0.190672296237272	0.901667807086741	0.998431161219273
Merged-chr4-138944461-1	chr4	138944361	138944561	+	858.0	f1_c57bl6.idr	Intergenic	Intergenic	-22651.0	NM_025786	66825.0	Mm.252312	NM_025786	ENSMUSG00000070661	Rnf186	9130020G10Rik	ring finger protein 186	protein-coding	2.58433287769323	3.27730523629178	2.56235091858155	3.00392171335948	3.02610867721553	3.1259262338878	1.86906171927345	2.83938974686607	-0.158537232122834	0.826828790170999	0.998431161219273
Merged-chr2-165448640-1	chr2	165448540	165448740	+	573.0	f0_balb.idr	exon (NM_054055, exon 2 of 13)	exon (NM_054055, exon 2 of 13)	24557.0	NM_054055	114644.0	Mm.250738	NM_054055	ENSMUSG00000018459	Slc13a3	NaDC-3|NaDC3|SDCT2	solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64794152-4	chr5	64794073	64794273	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9350.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	-2.18292257394068	-2.15545247547656	-2.03304972317742	-2.17058342868585	-2.18099422382073	-2.1536522739386	-2.16187909550322	-2.16936197735154	-0.683654500252594	0.846597994014493	1
Merged-chr6-49057908-2	chr6	49057795	49057995	+	654.0	f0_balb.idr|f1_balb.idr	3' UTR (NM_053110, exon 11 of 11)	3' UTR (NM_053110, exon 11 of 11)	-15900.0	NM_029353	75593.0	Mm.439947	NM_029353	ENSMUSG00000029815	Malsu1	2410003K15Rik|Matsu1	mitochondrial assembly of ribosomal large subunit 1	protein-coding	1.73719858691504	1.01355212470056	2.22322253614748	0.968224649278865	1.63350271885964	2.66022201482825	1.63593874638672	1.21449557334061	0.815051600541692	0.496240950580092	0.936771217641569
Merged-chr1-193201583-4	chr1	193201483	193201683	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153137)	promoter-TSS (NM_153137)	-37.0	NM_153137	215243.0	Mm.261259	NM_153137	ENSMUSG00000037318	Traf3ip3	6030423D04Rik|AI115021|T3jam	TRAF3 interacting protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72135731-3	chr6	72135584	72135784	+	848.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001035228, intron 3 of 6)	intron (NM_001035228, intron 3 of 6)	-12487.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-5078685-2	chr7	5078585	5078785	+	688.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205231, intron 11 of 11)	intron (NM_001205231, intron 11 of 11)	-1550.0	NM_010147	13854.0	Mm.3091	NM_010147	ENSMUSG00000035203	Epn1	AA269831|Ibp1	epsin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-64589910-2	chr17	64589810	64590010	+	601.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11739.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-5112821-3	chr7	5112711	5112911	+	571.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145013, intron 2 of 2)	MTD|LTR|ERVL-MaLR	4100.0	NM_001145013	192658.0	Mm.28764	NM_138954	ENSMUSG00000035191	Rfpl4	D7Ertd486e|Rfpl4a	ret finger protein-like 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-94488126-2	chr3	94488026	94488226	+	817.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289620, intron 10 of 12)	intron (NM_001289620, intron 10 of 12)	3768.0	NR_151857	78784.0	Mm.44292	NM_172434	ENSMUSG00000028137	Celf3	4930415M08Rik|BRUNOL1|CAGH4|ERDA4|ETR-1|Tnrc4	CUGBP, Elav-like family member 3	protein-coding	-0.560024523608601	-0.549241905047998	-0.552784111533861	-0.555510659821536	-0.416088431092891	-0.193183828223566	0.0171016473006978	-0.555034741436098	3.3813188806288	0.189753993820923	1
Merged-chr4-83328212-4	chr4	83328132	83328332	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4043.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-107277135-3	chr7	107277045	107277245	+	766.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC3|LINE|L1	67700.0	NM_029660	76572.0	Mm.128134	NM_029660	ENSMUSG00000073894	Rbmxl2	1700012H05Rik|Hnrnpg-t	RNA binding motif protein, X-linked-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33687589-4	chr16	33687505	33687705	+	937.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175256, intron 1 of 14)	intron (NM_175256, intron 1 of 14)	3139.0	NM_175256	77446.0	Mm.245741	NM_172934	ENSMUSG00000075254	Heg1	4632417D23Rik|5530401I02Rik|9530025L16Rik|BC038614|Gm629	heart development protein with EGF-like domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-24754030-2	chr5	24753930	24754130	+	874.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153076, intron 3 of 3)	intron (NM_153076, intron 3 of 3)	3813.0	NM_153076	214301.0	Mm.63484	NM_153076	ENSMUSG00000038135	Crygn	-	crystallin, gamma N	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-77284416-3	chr16	77284314	77284514	+	865.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44914.0	NR_015543	77994.0	Mm.394688	NR_015543	ENSMUSG00000090386	Mir99ahg	2810055G20Rik|D730043B02Rik	Mir99a and Mirlet7c-1 host gene (non-protein coding)	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-53421961-3	chr19	53421867	53422067	+	887.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31333.0	NM_172429	76479.0	Mm.313687	NM_172429	ENSMUSG00000025024	Smndc1	-	survival motor neuron domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-32629916-4	chr11	32629821	32630021	+	890.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12634.0	NM_001271348	103583.0	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	0.520841243785239	1.3936319564704	1.09166356443869	0.824068183869484	0.522156105130211	0.543677306373037	0.536628570376718	1.05920779871164	-1.86412694987608	0.290228065059129	0.795360911821054
Merged-chr18-60481182-3	chr18	60481077	60481277	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134133, intron 1 of 1)	intron (NM_134133, intron 1 of 1)	20806.0	NM_134133	106878.0	Mm.273197	NM_134133	ENSMUSG00000038059	Smim3	2010002N04Rik|AI195350|AW561905|Nid67|cI-41	small integral membrane protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-40726903-2	chr19	40726803	40727003	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001304721, intron 6 of 9)	intron (NM_001304721, intron 6 of 9)	67133.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-126132415-2	chr4	126132310	126132510	+	998.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028800, intron 6 of 10)	MIR3|SINE|MIR	-15593.0	NM_172145	230752.0	Mm.41569	NM_172145	ENSMUSG00000050212	Eva1b	2610027C15Rik|Fam176b	eva-1 homolog B (C. elegans)	protein-coding	0.413207902632708	1.35291709065062	0.248386050287499	0.239597487799869	0.419121713624132	1.36940840128901	0.250871018238229	0.241143809849719	0.0396899215906468	0.982752903346195	0.998431161219273
Merged-chr6-54794542-3	chr6	54794476	54794676	+	728.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-22340.0	NM_199143	387524.0	Mm.286149	NM_199143	ENSMUSG00000058446	Znrf2	1190002C14Rik|AU044205|D6Ertd365e	zinc and ring finger 2	protein-coding	-0.109850699829736	-0.0892097337419593	0.920798928570497	-0.101115462363504	0.0593665522356706	0.470501750938496	-0.0944237311480975	-0.100202599563294	-0.930636994874712	0.677133509152094	1
Merged-chr7-19927006-4	chr7	19926923	19927123	+	922.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5880.0	NM_027514	52118.0	Mm.227506	NM_027514	ENSMUSG00000040511	Pvr	3830421F03Rik|CD155|D7Ertd458e|HVED|PVS|Taa1|Tage4|mE4|necl-5	poliovirus receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-126163247-2	chr4	126163147	126163347	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162533)	promoter-TSS (NM_001162533)	94.0	NM_001162533	66938.0	Mm.29813	NM_025856	ENSMUSG00000073758	Sh3d21	1700029G01Rik|AU019788	SH3 domain containing 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-6889095-2	chr13	6888995	6889195	+	562.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13C2|LTR|ERVK	-240324.0	NM_001291071	56421.0	Mm.273874	NM_019703	ENSMUSG00000021196	Pfkp	1200015H23Rik|9330125N24Rik|ATP-PFK|PFK-C|PFK-P	phosphofructokinase, platelet	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25753254-2	chr7	25753154	25753354	+	798.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360789, intron 1 of 14)	intron (NM_001360789, intron 1 of 14)	1505.0	NM_144922	232989.0	Mm.254223	NM_144922	ENSMUSG00000040725	Hnrnpul1	E130317O14Rik|E1B-AP5|E1BAP5|Hnrnpul|Hnrpul1	heterogeneous nuclear ribonucleoprotein U-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-12919756-2	chr13	12919656	12919856	+	597.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	85574.0	NM_031191	18811.0	Mm.88796	NM_031191	ENSMUSG00000079092	Prl2c2	Ghd2|MRP-1|PLF-1|Plf|Plf1	prolactin family 2, subfamily c, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88771611-4	chr3	88771481	88771681	+	875.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018804, intron 1 of 3)	intron (NM_018804, intron 1 of 3)	1018.0	NM_018804	229521.0	Mm.379376	NM_018804	ENSMUSG00000068923	Syt11	1500004A13Rik|3632445O20Rik|5430404N14Rik|6530420C11Rik|AI851970	synaptotagmin XI	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-19024643-3	chr11	19024563	19024763	+	921.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5694.0	NM_010789	17268.0	Mm.356578	NM_010789	ENSMUSG00000020160	Meis1	C530044H18Rik|Evi8	Meis homeobox 1	protein-coding	-0.243151741984827	-0.0699201743536071	-0.236859565718305	0.120489019976919	-0.0142060718407356	-0.233023547643739	-0.23617349896518	0.125434306961179	0.195151869921959	0.932966307219644	1
Merged-chr14-70176392-2	chr14	70176292	70176492	+	848.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145978, intron 1 of 9)	intron (NM_145978, intron 1 of 9)	423.0	NM_001253736	213019.0	Mm.283968	NM_145978	ENSMUSG00000022090	Pdlim2	4732462F18Rik|Slim	PDZ and LIM domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97959161-1	chr11	97959061	97959261	+	603.0	f1_balb.idr	intron (NM_001163608, intron 2 of 13)	MLT1C|LTR|ERVL-MaLR	27285.0	NM_028199	72324.0	Mm.39617	NM_028199	ENSMUSG00000017417	Plxdc1	2410003I07Rik|AI848450|Tem7	plexin domain containing 1	protein-coding	-0.188969212180794	-0.168544648327571	0.581679044323589	-0.180315659454633	-0.187673989745816	0.762120787759674	-0.173696338967082	-0.179412173312022	0.467947472784756	0.847254856651905	1
Merged-chr17-78362537-4	chr17	78362441	78362641	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015800, intron 13 of 16)	intron (NM_015800, intron 13 of 16)	55611.0	NM_001285949	225020.0	Mm.236835	NM_199448	ENSMUSG00000056121	Fez2	9030616F16|D17Ertd315e	fasciculation and elongation protein zeta 2 (zygin II)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-24352330-2	chr5	24352230	24352430	+	683.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013569)	promoter-TSS (NM_013569)	-726.0	NM_013569	16511.0	Mm.6539	NM_013569	ENSMUSG00000038319	Kcnh2	AI326795|ERG1|LQT|Lqt2|M-erg|Merg1|merg1a|merg1b	potassium voltage-gated channel, subfamily H (eag-related), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-55493818-1	chr13	55493718	55493918	+	716.0	f1_c57bl6.idr	Intergenic	Intergenic	-5742.0	NM_001177372	56320.0	Mm.19016	NM_019813	ENSMUSG00000034675	Dbn1	-	drebrin 1	protein-coding	0.583340701397785	1.06394666175881	0.324433736815126	0.487389965280988	0.310971185647166	0.333246918664192	0.798319487714803	0.759775900123122	-0.447287575936726	0.801340161570904	1
Merged-chr6-7605270-2	chr6	7605202	7605402	+	570.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	50241.0	NM_001311060	21333.0	Mm.1440	NM_009311	ENSMUSG00000061762	Tac1	4930528L02Rik|NK-1|NK1|Nkna|PPT-A|PPTA|SP	tachykinin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-66980021-3	chr15	66979915	66980115	+	780.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10374.0	NM_008681	17988.0	Mm.30837	NM_008681	ENSMUSG00000005125	Ndrg1	CAP43|CMT4D|DRG1|HMSNL|NMSL|Ndr1|Ndrl|PROXY1|RTP|TDD5	N-myc downstream regulated gene 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-140998014-4	chr7	140997907	140998107	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12737.0	NM_025378	66141.0	Mm.141021	NM_025378	ENSMUSG00000025492	Ifitm3	1110004C05Rik|Cd225|Cdw217|DSPA2b|Fgls|IP15|mil-1	interferon induced transmembrane protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124893807-1	chr6	124893707	124893907	+	642.0	f1_c57bl6.idr	Intergenic	B4|SINE|B4	-5607.0	NM_013488	12504.0	Mm.2209	NM_013488	ENSMUSG00000023274	Cd4	L3T4|Ly-4	CD4 antigen	protein-coding	-0.955861266431766	-0.939312647090745	-0.949627244197155	-0.303288209597	-0.955282438204586	-0.740615642643367	-0.948954731844904	-0.951561093566521	-1.95890783655533	0.523841026496453	1
Merged-chr7-122207448-3	chr7	122207339	122207539	+	657.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-12057.0	NM_027363	70261.0	Mm.96997	NM_027363	ENSMUSG00000030865	Chp2	2010110P09Rik|Cbhp2	calcineurin-like EF hand protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-40129947-2	chr10	40129847	40130047	+	828.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 1 of 5)	intron (NM_001114332, intron 1 of 5)	12307.0	NM_028247	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-182489929-4	chr1	182489818	182490018	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009794, intron 6 of 20)	intron (NM_009794, intron 6 of 20)	27692.0	NM_009794	12334.0	Mm.19306	NM_009794	ENSMUSG00000026509	Capn2	AI326419|CALP80|Capa-2|Capa2|m-calpain|m-calpin	calpain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-59360887-4	chr4	59360787	59360987	+	808.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163288, intron 10 of 16)	L1MC4|LINE|L1	77746.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	-1.7024385483431	-1.81249224917775	-1.82134771053534	-1.82862185015837	-1.70038292649591	-1.81057323376012	-1.81934302819017	-1.82731978264371	0.0376840119903864	0.991491645451152	1
Merged-chr19-5473880-4	chr19	5473781	5473981	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164352)	promoter-TSS (NM_001164352)	-809.0	NM_021474	58859.0	Mm.276367	NM_021474	ENSMUSG00000024909	Efemp2	0610011K11Rik|Fbln4|MBP1	epidermal growth factor-containing fibulin-like extracellular matrix protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80008255-2	chr7	80008155	80008355	+	690.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-16559.0	NM_001145999	209225.0	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-42170486-2	chr10	42170386	42170586	+	746.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	106256.0	NM_019740	56484.0	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-119720720-4	chr7	119720585	119720785	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_145585, exon 2 of 5)	exon (NM_145585, exon 2 of 5)	2934.0	NM_145585	233802.0	Mm.26392	NM_145585	ENSMUSG00000030942	Thumpd1	6330575P11Rik	THUMP domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27503820-4	chr2	27503736	27503936	+	789.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR11A2|LTR|ERVK	-11311.0	NM_080848	140858.0	Mm.28265	NM_080848	ENSMUSG00000026917	Wdr5	2410008O07Rik|AA408785|AA960360|Big|Big-3	WD repeat domain 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-142005532-4	chr4	142005432	142005632	+	819.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177868, intron 1 of 31)	intron (NM_177868, intron 1 of 31)	6119.0	NM_177868	329977.0	Mm.252019	NM_028429	ENSMUSG00000051435	Fhad1	2900090M10Rik|B230311F11	forkhead-associated (FHA) phosphopeptide binding domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-56106838-4	chr10	56106741	56106941	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163833)	promoter-TSS (NM_001163833)	-76.0	NM_001163833	73390.0	Mm.181475	NM_133751	ENSMUSG00000047669	Msl3l2	1700060H10Rik	MSL3 like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-40723206-4	chr4	40723079	40723279	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_077221)	promoter-TSS (NR_077221)	249.0	NM_001164672	15502.0	Mm.27897	NM_008298	ENSMUSG00000028410	Dnaja1	HSJ-2|Hsj2|Nedd7	DnaJ heat shock protein family (Hsp40) member A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71195892-4	chr17	71195778	71195978	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022882, intron 1 of 19)	intron (NM_022882, intron 1 of 19)	-8776.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	3.11499182036224	3.29811260877821	3.83408640895536	4.05668235112389	3.22591249671697	3.32273991608519	4.03855619981183	2.87898943782187	-0.297041058396317	0.603619144002046	0.973589491466885
Merged-chr12-111732711-4	chr12	111732641	111732841	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163388, intron 4 of 5)	intron (NM_001163388, intron 4 of 5)	19472.0	NM_026511	68020.0	Mm.425762	NM_026511	ENSMUSG00000037787	Apopt1	1700081D05Rik|2810002N01Rik|Apop-1|Apop1	apoptogenic, mitochondrial 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-123568493-2	chr4	123568393	123568593	+	707.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199137, intron 1 of 92)	intron (NM_001199137, intron 1 of 92)	-47927.0	NR_105824	102465214.0		NR_105824	ENSMUSG00000099005	Mir6398	Gm27657|mmu-mir-6398	microRNA 6398	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-33324793-4	chr14	33324700	33324900	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153800, intron 4 of 10)	intron (NM_153800, intron 4 of 10)	86224.0	NM_001310452	26419.0	Mm.21495	NM_016700	ENSMUSG00000021936	Mapk8	AI849689|JNK|JNK1|Prkm8|SAPK1	mitogen-activated protein kinase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-82797246-4	chr1	82797151	82797351	+	769.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A1|LTR|ERVL-MaLR	-28795.0	NM_025453	66261.0	Mm.46325	NM_025453	ENSMUSG00000026149	Tm4sf20	1810018L02Rik	transmembrane 4 L six family member 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-118386786-3	chr13	118386702	118386902	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_021556, exon 1 of 5)	exon (NM_021556, exon 1 of 5)	450.0	NM_021556	59054.0	Mm.143810	NM_021556	ENSMUSG00000021731	Mrps30	2610020A16Rik|AA968347|PAP|Pdcd9	mitochondrial ribosomal protein S30	protein-coding	2.12153247617499	3.80840978985967	2.8873674239416	3.26058047356726	2.67655229736291	3.70951632951994	2.79017971904257	2.57039866311622	-0.22638618414761	0.749522955849545	0.998431161219273
Merged-chr15-6557119-4	chr15	6557010	6557210	+	962.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22737.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131198030-2	chr1	131197930	131198130	+	684.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_018750, intron 2 of 5)	B2_Mm2|SINE|B2	2155.0	NM_001311094	54354.0	Mm.248291	NM_018750	ENSMUSG00000026430	Rassf5	1300019G20Rik|Maxp1|Nore1|Nore1A|Nore1B|Rapl	Ras association (RalGDS/AF-6) domain family member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-154260626-1	chr1	154260526	154260726	+	1000.0	f0_balb.idr	intron (NR_108050, intron 1 of 2)	intron (NR_108050, intron 1 of 2)	-3720.0	NR_040629	78112.0	Mm.401935	NR_040629	ENSMUSG00000099933	4930452N14Rik	-	RIKEN cDNA 4930452N14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-119790874-4	chr13	119790765	119790965	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028245)	promoter-TSS (NM_028245)	-59.0	NM_001302549	72465.0	Mm.139115	NM_028245	ENSMUSG00000094870	Zfp131	2610109I01Rik|AW558871|Znf131	zinc finger protein 131	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-55077994-1	chr12	55077894	55078094	+	1000.0	f1_balb.idr	intron (NR_155260, intron 1 of 7)	MLTR18D_MM|LTR|ERVK	2116.0	NR_030764	72658.0	Mm.434380	NM_028314	ENSMUSG00000062198	2700097O09Rik	AW552125	RIKEN cDNA 2700097O09 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-164859836-4	chr2	164859754	164859954	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	-2146.0	NM_011125	18830.0	Mm.6105	NM_011125	ENSMUSG00000017754	Pltp	Bpife|OD107	phospholipid transfer protein	protein-coding	3.06299428480888	3.51033052754767	3.5401061649377	3.44497955096703	2.61366414564432	3.17173715406031	2.19814128504589	3.15888991466924	-0.946845903402435	0.132180648993802	0.56910731882715
Merged-chr1-37473526-1	chr1	37473426	37473626	+	551.0	f0_balb.idr	intron (NM_173870, intron 5 of 15)	L1M3b|LINE|L1	15079.0	NR_024017	77633.0	Mm.483177	NR_024017	ENSMUSG00000103948	4930594C11Rik	-	G1 to S phase transition pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-80030018-3	chr15	80029927	80030127	+	685.277771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	-15219.0	NM_011057	18591.0	Mm.144089	NM_011057	ENSMUSG00000000489	Pdgfb	PDGF-B|Sis	platelet derived growth factor, B polypeptide	protein-coding	-0.711534786235198	-0.837767025781192	-0.842291845797887	-0.844401478979204	-0.5874755507274	-0.835127098482182	-0.395808213036049	-0.844033500851596	2.03279384638375	0.473926463933525	1
Merged-chr16-91358930-2	chr16	91358830	91359030	+	968.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-13853.0	NM_010509	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-33178629-3	chr19	33178533	33178733	+	690.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146342, intron 3 of 4)	RMER13B|LTR|ERVK	21521.0	NR_039552	100628575.0		NR_039552	ENSMUSG00000106278	Mir3970	mmu-mir-3970|mu-mir-3970	microRNA 3970	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-12304066-3	chr1	12303975	12304175	+	999.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	-121911.0	NR_105759	102465961.0		NR_105759	ENSMUSG00000098555	Mir6341	Gm27262|mmu-mir-6341	microRNA 6341	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-79392280-2	chr14	79392180	79392380	+	829.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur3|SINE|Alu	-1612.0	NM_025832	66897.0	Mm.24425	NM_025832	ENSMUSG00000022020	Naa16	1300019C06Rik|Narg1l	N(alpha)-acetyltransferase 16, NatA auxiliary subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-183439220-3	chr1	183439129	183439329	+	976.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19981.0	NM_001308052	78772.0	Mm.29003	NM_030175	ENSMUSG00000053461	Hhipl2	4930507C10Rik|AW208802|Hhip3	hedgehog interacting protein-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76351216-4	chr15	76351128	76351328	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164608)	promoter-TSS (NM_001164608)	-66.0	NM_001164607	68877.0	Mm.289680	NM_026859	ENSMUSG00000022553	Maf1	1110068E11Rik|AU042856	MAF1 homolog, negative regulator of RNA polymerase III	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167007054-4	chr2	167006961	167007161	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8252.0	NM_153065	228889.0	Mm.295031	NM_153065	ENSMUSG00000017999	Ddx27	C86129	DEAD (Asp-Glu-Ala-Asp) box polypeptide 27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-37605100-3	chr6	37605012	37605212	+	741.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	74939.0	NM_145364	208665.0	Mm.262635	NM_145364	ENSMUSG00000038641	Akr1d1	-	aldo-keto reductase family 1, member D1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-46650493-4	chr17	46650403	46650603	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001316742)	TTS (NM_001316742)	165.0	NM_025611	66515.0	Mm.329078	NM_025611	ENSMUSG00000038545	Cul7	2510004L20Rik|AA409809|C230011P08Rik|p185|p193	cullin 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-126016464-2	chr4	126016364	126016564	+	627.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8195.0	NR_045561	12986.0	Mm.271701	NM_007782	ENSMUSG00000028859	Csf3r	Cd114|Csfgr|G-CSF-R|G-CSFR	colony stimulating factor 3 receptor (granulocyte)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134919530-2	chr6	134919431	134919631	+	845.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009875)	promoter-TSS (NM_009875)	-870.0	NM_009875	12576.0	Mm.2958	NM_009875	ENSMUSG00000003031	Cdkn1b	AA408329|AI843786|Kip1|p27|p27Kip1	cyclin-dependent kinase inhibitor 1B	protein-coding	1.04864863551603	0.77499528248863	1.41087399768958	1.65786412691408	1.29749337295755	0.777883605684636	0.764939476007169	1.66805072883302	-0.291444584490172	0.841473313800022	0.998431161219273
Merged-chr4-119174294-4	chr4	119174195	119174395	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183140)	promoter-TSS (NM_183140)	-100.0	NM_001145936	195522.0	Mm.169620	NM_183140	ENSMUSG00000045268	Zfp691	6430544H17Rik|Znf691	zinc finger protein 691	protein-coding	5.25271609117946	5.46577646021471	6.75342137664849	5.91309580952113	5.93979950764131	6.36914619547986	6.67953469381158	5.72275570876644	0.27665307939726	0.389198756394238	0.878578793881975
Merged-chr4-132306177-4	chr4	132306078	132306278	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-2500.0	NR_029468	100039864.0	Mm.258912	NR_029468	ENSMUSG00000086290	Snhg12	2310005L22Rik	small nucleolar RNA host gene 12	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6235898-4	chr19	6235795	6235995	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198168)	promoter-TSS (NM_198168)	-55.0	NM_198168	225849.0	Mm.118076	NM_198168	ENSMUSG00000024777	Ppp2r5b	B'beta|BC026670	protein phosphatase 2, regulatory subunit B', beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-66223824-4	chr14	66223725	66223925	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	-10001.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-119445969-4	chr9	119445878	119446078	+	823.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153321, intron 3 of 7)	intron (NR_153321, intron 3 of 7)	1018.0	NR_153319	208194.0	Mm.101578	NM_172456	ENSMUSG00000042787	Exog	AW557704|ENGL-B|ENGL-a|Endogl1|Endogl2|Engl|Engla|Englb	endo/exonuclease (5'-3'), endonuclease G-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-83832229-1	chr3	83832129	83832329	+	729.0	f1_balb.idr	Intergenic	Intergenic	9379.0	NM_011905	24088.0	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	2.06930809217407	1.26307842014433	1.98150137661624	0.960016445159499	2.52593342181453	1.0066082429579	1.23244188521684	1.69398347533514	0.314216654106732	0.800210985590867	0.998431161219273
Merged-chr11-103115406-4	chr11	103115311	103115511	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138753)	promoter-TSS (NM_138753)	-914.0	NM_138753	192231.0	Mm.8763	NM_138753	ENSMUSG00000048878	Hexim1	7330426E13Rik|CLP-1|Clp1|HIS1	hexamethylene bis-acetamide inducible 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-38778701-4	chr12	38778627	38778827	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1355.0	NM_001347379	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-121358570-1	chr14	121358470	121358670	+	604.0	f0_balb.idr	intron (NM_145465, intron 1 of 10)	intron (NM_145465, intron 1 of 10)	20660.0	NM_145465	223255.0	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-96597152-2	chr15	96597052	96597252	+	710.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166456, intron 4 of 15)	intron (NM_001166456, intron 4 of 15)	44810.0	NM_134086	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4079499-6	chr16	4079437	4079637	+	837.327759	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1727.0	NM_026508	68015.0	Mm.123366	NM_026508	ENSMUSG00000005981	Trap1	2410002K23Rik|HSP75	TNF receptor-associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-121844154-2	chr5	121844054	121844254	+	843.7999880000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4843.0	NM_175474	231717.0	Mm.12654	NM_175474	ENSMUSG00000044134	Fam109a	A230106M15Rik|AU017694|IPIP27A|Ses1	family with sequence similarity 109, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-59292864-2	chr9	59292764	59292964	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359282, intron 1 of 6)	B1_Mur4|SINE|Alu	1292.0	NM_028121	72141.0	Mm.22456	NM_028121	ENSMUSG00000025236	Adpgk	2610017G09Rik|Adp-gk|C77577	ADP-dependent glucokinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-73247722-2	chr6	73247622	73247822	+	997.7999880000001	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019879)	promoter-TSS (NM_019879)	-783.0	NM_019879	56451.0	Mm.29845	NM_019879	ENSMUSG00000052738	Suclg1	1500000I01Rik|Sucla1	succinate-CoA ligase, GDP-forming, alpha subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-136962155-4	chr5	136962063	136962263	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025562)	promoter-TSS (NM_025562)	86.0	NM_025562	66437.0	Mm.25849	NM_025562	ENSMUSG00000019054	Fis1	2010003O14Rik|Ttc11	fission, mitochondrial 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-120325811-4	chr14	120325722	120325922	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360376, intron 2 of 8)	intron (NM_001360376, intron 2 of 8)	19370.0	NM_001360376	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27741595-2	chr2	27741495	27741695	+	986.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290481, intron 3 of 9)	intron (NM_001290481, intron 3 of 9)	31012.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-34235031-2	chr7	34234947	34235147	+	716.5	f0_balb.idr|f1_balb.idr	Intergenic	URR1B|DNA|hAT-Charlie	-4711.0	NM_008155	14751.0	Mm.589	NM_008155	ENSMUSG00000036427	Gpi1	Amf|Gpi|Gpi-1|Gpi-1r|Gpi-1s|Gpi-1t|Gpi1-r|Gpi1-s|Gpi1-t|Gpi1s|MF|NK|NK/GPI|Nlk|Org|Pgi|Phi	glucose phosphate isomerase 1	protein-coding	2.93960864554836	2.78629335228021	1.28674157635502	1.25663221370579	2.57337583034473	2.60508103564577	2.40146164865288	1.73267169354634	0.0983212090288428	0.923217508067803	0.998431161219273
Merged-chr11-83289759-2	chr11	83289659	83289859	+	677.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1940.0	NR_028363	613254.0	Mm.383758	NR_028363	ENSMUSG00000093483	AA465934	-	expressed sequence AA465934	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-74395237-2	chr1	74395137	74395337	+	841.7999880000001	f1_balb.idr|f1_c57bl6.idr	TTS (NR_029743)	TTS (NR_029743)	927.0	NR_029743	387219.0		NR_029743	ENSMUSG00000065468	Mir26b	Mirn26b|mir-26b|mmu-mir-26b	microRNA 26b	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-123254192-4	chr8	123254098	123254298	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020497)	promoter-TSS (NM_020497)	3.0	NM_020497	57247.0	Mm.379084	NM_020497	ENSMUSG00000001065	Zfp276	AW048709|D8Ertd370e|D8Ertd377e|Znf276	zinc finger protein (C2H2 type) 276	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-105481442-2	chr9	105481342	105481542	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253831, intron 1 of 26)	intron (NM_001253831, intron 1 of 26)	13691.0	NM_175025	235574.0	Mm.326247	NM_175025	ENSMUSG00000032570	Atp2c1	1700121J11Rik|ATP2C1A|AW061228|BCPM|D930003G21Rik|HHD|SPCA|pmr1	ATPase, Ca++-sequestering	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-78059934-3	chr2	78059824	78060024	+	725.955566	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_108098, intron 1 of 6)	intron (NR_108098, intron 1 of 6)	8747.0	NR_108098	78158.0	Mm.78473	NR_108098	ENSMUSG00000085431	4930440I19Rik	-	RIKEN cDNA 4930440I19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-55521291-3	chr1	55521195	55521395	+	650.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114663, intron 1 of 5)	intron (NM_001114663, intron 1 of 5)	115349.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	-2.18138529563533	-2.15523716995652	-2.1631445789866	-2.16963996020037	-2.05513010215571	-2.15352360143315	-2.16135451490766	-2.16847729006863	0.759018020146679	0.829933115115583	1
Merged-chr6-100357163-4	chr6	100357043	100357243	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-69785.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-64858541-4	chr14	64858450	64858650	+	861.8624880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177338, intron 5 of 9)	intron (NM_177338, intron 5 of 9)	91307.0	NM_177338	219150.0	Mm.344074	NM_177338	ENSMUSG00000021972	Hmbox1	AI451877|AI604847|F830020C16Rik	homeobox containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153131466-2	chr2	153131366	153131566	+	924.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001172117, intron 6 of 12)	intron (NM_001172117, intron 6 of 12)	22998.0	NM_010407	15162.0	Mm.715	NM_010407	ENSMUSG00000003283	Hck	AI849071|Bmk	hemopoietic cell kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99179686-2	chr7	99179586	99179786	+	561.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026384, intron 1 of 7)	intron (NM_026384, intron 1 of 7)	3027.0	NM_026384	67800.0	Mm.180189	NM_026384	ENSMUSG00000030747	Dgat2	0610010B06Rik|ARAT|DGAT-2	diacylglycerol O-acyltransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-95037185-4	chr8	95037095	95037295	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173036, intron 8 of 11)	intron (NM_173036, intron 8 of 11)	-17908.0	NM_001042715	330830.0	Mm.277112	NM_001042715	ENSMUSG00000031786	Drc7	Ccdc135|Gm770|SRG-L|SRG-S	dynein regulatory complex subunit 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101062197-2	chr7	101062107	101062307	+	726.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46568.0	NM_001146010	207278.0	Mm.263041	NM_199012	ENSMUSG00000030691	Fchsd2	BC034086|R74866|Sh3md3|mKIAA0769	FCH and double SH3 domains 2	protein-coding	0.629450904012644	0.372542605425931	0.36477507665799	0.358759633332186	1.03115333967511	1.02054068542099	0.968314622164508	0.359811977978338	2.93124870706705	0.121239687782859	1
Merged-chr3-9659318-2	chr3	9659218	9659418	+	561.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-49233.0	NM_133218	170753.0	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-8990452-4	chr3	8990260	8990460	+	894.4722289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	13844.0	NM_001357073	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-156418852-1	chr1	156418752	156418952	+	690.0	f1_c57bl6.idr	intron (NM_001346967, intron 3 of 25)	PB1D7|SINE|Alu	2063.0	NM_001346967	77352.0	Mm.428709	NM_001033180	ENSMUSG00000026601	Axdnd1	9430070O13Rik|Gm979	axonemal dynein light chain domain containing 1	protein-coding	0.30477867127821	-0.0544890314521001	0.394936381789439	0.652294812876543	-0.0694379181602244	-0.0533119716292028	-0.0585594033108944	-0.0630371646333189	-3.92097848614597	0.0777276019118899	1
Merged-chr11-53737221-4	chr11	53737109	53737309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16415.0	NM_010558	16191.0	Mm.4461	NM_010558	ENSMUSG00000036117	Il5	Il-5	interleukin 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-101929955-2	chr5	101929855	101930055	+	633.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_172882, exon 17 of 67)	exon (NM_172882, exon 17 of 67)	139966.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-17749190-4	chr6	17749099	17749299	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001083315)	promoter-TSS (NM_001083315)	29.0	NM_001083315	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-109203273-3	chr4	109203124	109203324	+	759.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133885)	promoter-TSS (NM_133885)	-952.0	NM_001346502	100273.0	Mm.366315	NM_133885	ENSMUSG00000028559	Osbpl9	2600011I06Rik|AU015843|Orp-9	oxysterol binding protein-like 9	protein-coding	0.420824490965597	1.05774494115606	0.447023635569078	0.43731770100845	0.904918302475459	1.72914782102547	1.01753579193832	0.439025266755704	2.31058840531152	0.177423975818172	0.647293592702136
Merged-chr18-60796740-1	chr18	60796640	60796840	+	621.0	f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-7109.0	NM_001042605	16149.0	Mm.439737	NM_010545	ENSMUSG00000024610	Cd74	CLIP|DHLAG|HLADG|Ia-GAMMA|Ii	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-140715155-4	chr6	140715066	140715266	+	832.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	88281.0	NM_001309436	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-83862014-4	chr12	83861896	83862096	+	926.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_073564, intron 2 of 12)	intron (NR_073564, intron 2 of 12)	14816.0	NM_001272056	18222.0	Mm.4390	NM_010949	ENSMUSG00000021224	Numb	Nb	NUMB endocytic adaptor protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27496648-2	chr2	27496548	27496748	+	567.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MURVY-int|LTR|ERV1	-18499.0	NM_080848	140858.0	Mm.28265	NM_080848	ENSMUSG00000026917	Wdr5	2410008O07Rik|AA408785|AA960360|Big|Big-3	WD repeat domain 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44310955-5	chr7	44310686	44310886	+	839.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034115, intron 1 of 24)	intron (NM_001034115, intron 1 of 24)	522.0	NM_001034115	243961.0	Mm.360368	NM_001034115	ENSMUSG00000038738	Shank1	-	SH3 and multiple ankyrin repeat domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71474801-1	chr17	71474701	71474901	+	949.0	f0_balb.idr	intron (NM_028887, intron 1 of 47)	CpG	542.0	NM_028887	74355.0	Mm.194450	NM_028887	ENSMUSG00000024054	Smchd1	4931400A14Rik|AW554188|MommeD1|mKIAA0650	SMC hinge domain containing 1	protein-coding	2.20611608801841	0.763426003678731	2.02109740111423	0.959443839113179	0.91738263397423	1.42456842230868	0.748664016775511	0.964518375978161	-2.08826190953367	0.127257786463029	0.558191173038055
Merged-chr10-121508166-2	chr10	121508066	121508266	+	823.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-31916.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125350679-4	chr6	125350583	125350783	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011609, intron 1 of 9)	intron (NM_011609, intron 1 of 9)	960.0	NM_011609	21937.0	Mm.1258	NM_011609	ENSMUSG00000030341	Tnfrsf1a	CD120a|FPF|TNF-R|TNF-R-I|TNF-R1|TNF-R55|TNF-alphaR1|TNFAR|TNFR60|TNFRI|TNFRp55|TNFalpha-R1|Tnfr-2|Tnfr1|p55|p55-R	tumor necrosis factor receptor superfamily, member 1a	protein-coding	3.15754542799142	2.59142156467898	3.17954158410222	3.17355969627904	3.11372917097664	2.75916302666902	2.36061416524293	3.46697503629625	-0.0925270021386227	0.888663844226306	0.998431161219273
Merged-chr16-73875169-4	chr16	73875067	73875267	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	466900.0	NR_030464	751561.0		NR_030464	ENSMUSG00000104758	Mir691	Mirn691|mir-691|mmu-mir-691	microRNA 691	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-63759328-2	chr9	63759228	63759428	+	882.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1334.0	NM_016769	17127.0	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-133744611-8	chr7	133744517	133744717	+	837.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357685, intron 3 of 11)	intron (NM_001357685, intron 3 of 11)	15652.0	NM_001286030	101437.0	Mm.199223	NM_133941	ENSMUSG00000030986	Dhx32	3110079L04Rik|4732469F02Rik|AA408140|Ddx32|muDDX32	DEAH (Asp-Glu-Ala-His) box polypeptide 32	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-23814024-2	chr18	23813924	23814124	+	638.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153058, intron 1 of 6)	B4|SINE|B4	10054.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-130794172-3	chr4	130794090	130794290	+	662.277771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011520, intron 1 of 4)	MIR3|SINE|MIR	1653.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67290184-4	chr10	67290083	67290283	+	807.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-4902.0	NM_001036293	641340.0	Mm.136223	NM_001036293	ENSMUSG00000075000	Nrbf2	NRBF-2	nuclear receptor binding factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-42006890-1	chr19	42006790	42006990	+	684.0	f1_balb.idr	intron (NM_145500, intron 1 of 2)	intron (NM_145500, intron 1 of 2)	25127.0	NM_145500	226122.0	Mm.22948	NM_145500	ENSMUSG00000025171	Ubtd1	BC016129	ubiquitin domain containing 1	protein-coding	1.45685049261676	2.06462649540019	0.967227436660456	1.68467743097929	2.23997582435473	2.38199363537874	0.972551757361572	0.95159745871619	0.594886194145133	0.641692923326678	0.982599433509505
Merged-chr6-134066295-4	chr6	134066192	134066392	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007961, intron 1 of 7)	MLT2B2|LTR|ERVL	30592.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-144002149-3	chr1	144002005	144002205	+	925.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009061, intron 4 of 4)	intron (NM_009061, intron 4 of 4)	2044.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-61232860-2	chr9	61232760	61232960	+	586.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60949.0	NR_045334	622037.0	Mm.126243	NR_045334	ENSMUSG00000111658	B930092H01Rik	-	RIKEN cDNA B930092H01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-32567552-3	chr11	32567453	32567653	+	656.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 2 of 18)	intron (NM_009288, intron 2 of 18)	34287.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70870940-1	chr8	70870840	70871040	+	970.0	f1_balb.idr	intron (NM_026964, intron 1 of 4)	intron (NM_026964, intron 1 of 4)	2550.0	NM_026964	234388.0	Mm.295791	NM_026964	ENSMUSG00000007721	Ccdc124	1810023B24Rik	coiled-coil domain containing 124	protein-coding	1.11258786424649	0.975907952415466	2.58091263262894	1.35477396624661	1.5748343280989	1.78884103907383	1.20534263832262	1.78683769163103	-0.301892490278433	0.799754145142713	0.998431161219273
Merged-chr10-80785032-2	chr10	80784932	80785132	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_199322, intron 17 of 27)	intron (NM_199322, intron 17 of 27)	13594.0	NM_023900	78670.0	Mm.41479	NM_023900	ENSMUSG00000035278	Plekhj1	9530063M10Rik	pleckstrin homology domain containing, family J member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-99203753-4	chr10	99203664	99203864	+	961.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59467.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-40391737-2	chr19	40391637	40391837	+	890.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001034962, intron 5 of 22)	intron (NM_001034962, intron 5 of 22)	10573.0	NM_001034964	20411.0	Mm.210815	NM_009166	ENSMUSG00000025006	Sorbs1	2310065E01Rik|9530001P15Rik|CAP|SH3P12|Sh3d5|mKIAA1296	sorbin and SH3 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34437693-4	chr17	34437597	34437797	+	813.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001177, intron 6 of 19)	intron (NM_001001177, intron 6 of 19)	38240.0	NM_030746	632126.0	Mm.484958	NM_030746	ENSMUSG00000058435	Btnl4	Btn3a3|EG632126|NG11	butyrophilin-like 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70617800-6	chr8	70617720	70617920	+	857.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_153074, exon 2 of 3)	exon (NM_153074, exon 2 of 3)	976.0	NM_153074	211228.0	Mm.132939	NM_153074	ENSMUSG00000049988	Lrrc25	Mapa	leucine rich repeat containing 25	protein-coding	1.61400184874097	1.95656285519345	1.74662165870431	2.55085786596402	1.75517563764591	2.22205138896054	1.5938095870255	1.135744532906	-0.790691718312216	0.453182603683296	0.918977726026848
Merged-chr12-105705975-3	chr12	105705873	105706073	+	757.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030187)	promoter-TSS (NM_030187)	-9.0	NM_030187	78801.0	Mm.36006	NM_030187	ENSMUSG00000041323	Ak7	4930502N02Rik|AK 7	adenylate kinase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-75721737-1	chr2	75721637	75721837	+	560.0	f1_balb.idr	Intergenic	ID4|SINE|ID	-17074.0	NM_010902	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	1.25050764584562	1.57210352563881	0.933491163812637	1.92329489134372	1.63855024713577	2.26550385132044	0.937832023370973	1.32312393913634	0.514737681632178	0.680198044240784	0.995506882643648
Merged-chr6-52825728-4	chr6	52825617	52825817	+	968.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173406, intron 2 of 4)	intron (NM_173406, intron 2 of 4)	83903.0	NM_001168277	231986.0	Mm.386865	NM_173406	ENSMUSG00000063568	Jazf1	AI591476|C820002C15|Jaz1|Tip27	JAZF zinc finger 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-117585311-2	chr6	117585211	117585411	+	771.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Rod|LINE|L1	90076.0	NR_152214	100126203.0	Mm.217172	NR_152214		6820426E19Rik	Gm43983	RIKEN cDNA 6820426E19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-131204699-4	chr2	131204606	131204806	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5654.0	NM_001291032	69596.0	Mm.2937	NM_027129	ENSMUSG00000068264	Ap5s1	0610038L13Rik|2310035K24Rik|AW060727|sigma5	adaptor-related protein 5 complex, sigma 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-103566268-4	chr2	103566181	103566381	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178890)	promoter-TSS (NM_178890)	-29.0	NM_178890	99382.0	Mm.35850	NM_178890	ENSMUSG00000032724	Abtb2	AW539457|BPOZ-2	ankyrin repeat and BTB (POZ) domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-20563007-2	chr2	20562907	20563107	+	574.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177630, intron 2 of 17)	intron (NM_001177630, intron 2 of 17)	43494.0	NM_001177631	208618.0	Mm.237935	NM_029895	ENSMUSG00000036617	Etl4	6620402G01Rik|9430077C05Rik|BC026657|E330027G05Rik|Etl-4|Skt	enhancer trap locus 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-64770919-4	chr16	64770774	64770974	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026273)	promoter-TSS (NM_026273)	65.0	NM_026273	67609.0	Mm.212157	NM_026273	ENSMUSG00000059920	4930453N24Rik	AI649104|din	RIKEN cDNA 4930453N24 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-14886451-2	chr8	14886351	14886551	+	620.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2B|LTR|ERVL	-2085.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-73812203-2	chr18	73812079	73812279	+	713.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145494, intron 1 of 15)	intron (NM_145494, intron 1 of 15)	3213.0	NM_145494	107029.0	Mm.36817	NM_145494	ENSMUSG00000024556	Me2	AW120568|D030040L20Rik|NAD-ME	malic enzyme 2, NAD(+)-dependent, mitochondrial	protein-coding	0.257385526175487	-0.19613825579884	-0.200766945739433	-0.204335040935104	0.511014564871203	0.000367175459565983	-0.199746447441371	-0.203711890261813	1.09231631977245	0.649744416233454	1
Merged-chr4-141547534-4	chr4	141547412	141547612	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_030695, exon 1 of 1)	non-coding (NR_030695, exon 1 of 1)	1350.0	NR_030695	320456.0	Mm.32859	NM_177163		B330016D10Rik	-	RIKEN cDNA B330016D10 gene	ncRNA	5.10479055631346	4.58923348109072	4.55011673281433	4.37452990257138	5.24113152925365	5.0173797690243	5.13576196717029	5.24850726912755	0.569307564241384	0.0848763534498783	0.44758175503217
Merged-chr15-62111434-2	chr15	62111334	62111534	+	609.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_132746, intron 2 of 6)	(CA)n|Simple_repeat|Simple_repeat	72177.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-85591246-4	chr4	85591147	85591347	+	978.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	385791.0	NM_019535	20404.0	Mm.143603	NM_019535	ENSMUSG00000028488	Sh3gl2	9530001L19Rik|AI120490|AW555077|B930049H17Rik|EEN-B1|SH3PA|Sh3d2a	SH3-domain GRB2-like 2	protein-coding	4.51085626453812	4.59407979336271	3.28151256325143	4.81738860642851	3.86871137827548	3.03289481668979	2.91926400747527	3.73620667106391	-1.30578110185323	0.0126251835114967	0.128297813470585
Merged-chr9-43107049-8	chr9	43106934	43107134	+	872.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1316.0	NM_027144	69632.0	Mm.275266	NM_027144	ENSMUSG00000059495	Arhgef12	2310014B11Rik|AU019857|Larg|mKIAA0382	Rho guanine nucleotide exchange factor (GEF) 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114878877-2	chr11	114878777	114878977	+	586.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11164.0	NM_001347654	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72366599-2	chr6	72366499	72366699	+	574.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001331167, intron 1 of 5)	MTD|LTR|ERVL-MaLR	373.0	NM_001331167	66510.0	Mm.170023	NM_025607	ENSMUSG00000055850	Rnf181	1700047F16Rik|2500002L14Rik|6230415N01Rik|C77350	ring finger protein 181	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118041781-4	chr9	118041669	118041869	+	771.1750490000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286507, intron 1 of 6)	intron (NM_001286507, intron 1 of 6)	1247.0	NM_013727	27215.0	Mm.92705	NM_013727	ENSMUSG00000039285	Azi2	AA410145|AZ2	5-azacytidine induced gene 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-36162540-4	chr17	36162437	36162637	+	852.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_033517)	TTS (NR_033517)	6000.0	NM_001081032	667977.0	Mm.441651	NM_001081032	ENSMUSG00000073402	Gm8909	EG667977|H2-Tw5l|H2-gs17	predicted gene 8909	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-38888198-2	chr6	38888098	38888298	+	604.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12008.0	NM_001294143	15258.0	Mm.23790	NM_010433	ENSMUSG00000061436	Hipk2	1110014O20Rik|B230339E18Rik|Stank	homeodomain interacting protein kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46484750-4	chr19	46484653	46484853	+	845.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025391, intron 11 of 11)	intron (NM_001025391, intron 11 of 11)	-16895.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-38342927-3	chr15	38342831	38343031	+	815.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER4B|LTR|ERVK	-42220.0	NM_001289471	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-131975328-4	chr4	131975228	131975428	+	969.341675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183428, intron 10 of 20)	intron (NM_183428, intron 10 of 20)	53557.0	NM_001201367	623230.0	Mm.421179	NM_001201367	ENSMUSG00000070720	Tmem200b	EG623230	transmembrane protein 200B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-126621492-3	chr3	126621438	126621638	+	871.9166869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025438, intron 2 of 18)	intron (NM_001025438, intron 2 of 18)	24587.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	0.864545580448621	2.30659625787651	1.53770656615079	1.75624126917741	0.869330985047224	1.61170432140248	2.23784985026006	0.899201331945608	-0.478075452380398	0.718120725312549	0.998431161219273
Merged-chr6-142868000-2	chr6	142867900	142868100	+	711.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011374, intron 3 of 4)	intron (NM_011374, intron 3 of 4)	53769.0	NR_045707	665037.0	Mm.401493	NR_045707	ENSMUSG00000072683	Gm7457	EG665037	predicted gene 7457	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24540559-4	chr17	24540465	24540665	+	837.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6818.0	NM_177375	328778.0	Mm.266033	NM_177375	ENSMUSG00000079657	Rab26	A830020M03Rik	RAB26, member RAS oncogene family	protein-coding	3.53616043710555	3.027924535235	1.70229874629009	4.5054010877519	3.11505118276096	3.77126609326706	3.56715533853997	4.17341380649217	0.223097276586913	0.745985156256194	0.998431161219273
Merged-chr11-3915469-2	chr11	3915369	3915569	+	710.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153142)	promoter-TSS (NM_153142)	-805.0	NM_153142	103710.0	Mm.171514	NM_153142	ENSMUSG00000048807	Slc35e4	A330108F03Rik|AI414849|AI536442	solute carrier family 35, member E4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-4124485-2	chr7	4124385	4124585	+	711.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001454, intron 2 of 12)	intron (NM_001001454, intron 2 of 12)	-3757.0	NR_033568	77323.0	Mm.378791	NR_033568	ENSMUSG00000086155	9430041J12Rik	-	RIKEN cDNA 9430041J12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-60287455-4	chr10	60287355	60287555	+	889.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146124, intron 1 of 13)	intron (NM_001146124, intron 1 of 13)	2994.0	NM_001146124	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76523837-2	chr15	76523737	76523937	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1708.0	NM_130893	170729.0	Mm.218747	NM_130893	ENSMUSG00000048385	Scrt1	-	scratch family zinc finger 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-104353440-4	chr7	104353343	104353543	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175677)	promoter-TSS (NM_175677)	-85.0	NM_001146007	319236.0	Mm.425502	NM_175677	ENSMUSG00000057143	Trim12c	9230105E10Rik|Trim12-2	tripartite motif-containing 12C	protein-coding	5.02512687563804	4.70431290952187	5.61110153738128	5.5770478778013	5.42215641674719	5.78026323438262	5.2002163019531	5.25412986131241	0.168946429118892	0.587163872841095	0.967957151188163
Merged-chr17-32040476-4	chr17	32040383	32040583	+	976.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028244, intron 1 of 15)	RSINE1|SINE|B4	4321.0	NM_028244	72462.0	Mm.102761	NM_028244	ENSMUSG00000058392	Rrp1b	2600005C20Rik|D030064A17|Kiaa0179|mKIAA0179	ribosomal RNA processing 1 homolog B (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-104446522-4	chr7	104446422	104446622	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357467)	promoter-TSS (NM_001357467)	-397.0	NM_001357467	20128.0	Mm.295578	NM_009099	ENSMUSG00000030921	Trim30a	Rpt-1|Rpt1|Trim30	tripartite motif-containing 30A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70510456-4	chr8	70510365	70510565	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001348229)	promoter-TSS (NM_001348229)	-21.0	NR_151735	78183.0	Mm.297372	NR_151735		4930522P08Rik	-	RIKEN cDNA 4930522P08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-117889861-2	chr5	117889761	117889961	+	739.400024	f1_balb.idr|f1_c57bl6.idr	intron (NM_008712, intron 2 of 27)	intron (NM_008712, intron 2 of 27)	23022.0	NM_008712	18125.0	Mm.44249	NM_008712	ENSMUSG00000029361	Nos1	2310005C01Rik|N-NOS|NC-NOS|NO|NOS|NOS-I|Nos-1|bNOS|nNOS	nitric oxide synthase 1, neuronal	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-73200000-3	chr11	73199902	73200102	+	853.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031251)	promoter-TSS (NM_031251)	520.0	NM_029031	74637.0	Mm.200905	NM_029031	ENSMUSG00000005951	Shpk	4930431K22Rik|AI194947|AW260459|Carkl	sedoheptulokinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-50871485-1	chr14	50871385	50871585	+	624.0	f1_c57bl6.idr	promoter-TSS (NM_009351)	promoter-TSS (NM_009351)	-931.0	NM_009351	21745.0	Mm.318736	NM_009351	ENSMUSG00000006281	Tep1	Tp1	telomerase associated protein 1	protein-coding	1.80628825854229	1.84075903997203	0.930777703401377	1.13268020027073	1.39817894534165	0.954234358543547	2.25067525217751	1.47260998943169	0.377987352147401	0.764314671493732	0.998431161219273
Merged-chr1-34463889-2	chr1	34463837	34464037	+	835.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_011206, intron 5 of 14)	intron (NM_011206, intron 5 of 14)	4191.0	NM_011206	19253.0	Mm.361	NM_011206	ENSMUSG00000026126	Ptpn18	FLP1|HSCF|PTP-HSCF|PTP-K1|Ptpk1	protein tyrosine phosphatase, non-receptor type 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-168197771-3	chr2	168197674	168197874	+	820.583313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132310, intron 9 of 11)	intron (NR_132310, intron 9 of 11)	9338.0	NM_009628	11538.0	Mm.201322	NM_009628	ENSMUSG00000051149	Adnp	AA589558|mKIAA0784	activity-dependent neuroprotective protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-110686931-2	chr2	110686831	110687031	+	706.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355244, intron 15 of 23)	Lx|LINE|L1	-34563.0	NM_001290786	269328.0	Mm.32566	NM_172979	ENSMUSG00000050808	Muc15	4732460E09|D730046L02Rik|MUC-15	mucin 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-87180485-3	chr1	87180393	87180593	+	615.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2821.0	NM_027084	69453.0	Mm.84618	NM_027084	ENSMUSG00000036480	Prss56	1700027L20Rik	protease, serine 56	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-57121966-2	chr17	57121866	57122066	+	763.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16024.0	NR_033508	100169874.0	Mm.76700	NR_033508	ENSMUSG00000079414	Gm11110	-	predicted gene 11110	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-20033508-4	chr4	20033418	20033618	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER2|LTR|ERV1	-8534.0	NM_010281	14590.0	Mm.20461	NM_010281	ENSMUSG00000073987	Ggh	gamma-GH	gamma-glutamyl hydrolase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35516921-4	chr17	35516809	35517009	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146248)	promoter-TSS (NM_146248)	-85.0	NM_025674	106795.0	Mm.11434	NM_025674	ENSMUSG00000050410	Tcf19	5730403J10Rik|AW495861	transcription factor 19	protein-coding	2.93630486208794	3.08536027595146	3.2835183646231	3.1907851913779	3.92277589936948	2.06295834530666	3.87554668547407	3.29282370290569	0.564180509056325	0.381880198797893	0.873167061080636
Merged-chr7-128128102-2	chr7	128128002	128128202	+	671.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1466.0	NM_021334	16411.0	Mm.22378	NM_021334	ENSMUSG00000030789	Itgax	AI449405|Cd11c|Cr4|N418	integrin alpha X	protein-coding	0.349438220323058	1.2591401824071	0.367765879413853	1.04819016963715	0.774875444073707	0.37853241867202	0.734566260407706	0.362120918570107	-1.32855103620514	0.466376705661384	1
Merged-chr5-134373450-2	chr5	134373350	134373550	+	784.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081462, intron 22 of 29)	B3A|SINE|B2	46996.0	NR_039544	100628570.0		NR_039544	ENSMUSG00000093311	Mir3965	mmu-mir-3965|mu-mir-3965	microRNA 3965	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-57744587-2	chr10	57744487	57744687	+	780.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40336.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180318682-4	chr1	180318608	180318808	+	865.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11768.0	NM_001081175	320404.0	Mm.132535	NM_001081175	ENSMUSG00000038855	Itpkb	1110033J02Rik|E130307H12Rik	inositol 1,4,5-trisphosphate 3-kinase B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43509386-4	chr4	43509361	43509561	+	844.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001013377)	promoter-TSS (NM_001013377)	-714.0	NM_001013377	230098.0	Mm.331567	NM_001013377	ENSMUSG00000051517	Arhgef39	E130306D19Rik	Rho guanine nucleotide exchange factor (GEF) 39	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-58304747-1	chr4	58304647	58304847	+	794.0	f0_balb.idr	intron (NM_001037130, intron 5 of 12)	intron (NM_001037130, intron 5 of 12)	18785.0	NM_010944	18198.0	Mm.16148	NM_010944	ENSMUSG00000057280	Musk	Mdk4|Mlk|Nsk1|Nsk2|Nsk3	muscle, skeletal, receptor tyrosine kinase	protein-coding	0.466112677264821	0.128128429178251	0.122938375718408	0.118947301392215	0.652881920121984	0.470323535337372	0.124081413211391	0.526519674483168	1.90366343534486	0.357342929403429	1
Merged-chr16-32165485-4	chr16	32165397	32165597	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347182)	promoter-TSS (NM_001347182)	97.0	NM_146069	224109.0	Mm.33498	NM_146069	ENSMUSG00000052384	Nrros	E430025L02Rik|Lrcc33|Lrrc33	negative regulator of reactive oxygen species	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-150784548-3	chr2	150784446	150784646	+	581.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2250.0	NM_153781	110078.0	Mm.222584	NM_153781	ENSMUSG00000033059	Pygb	-	brain glycogen phosphorylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-8962827-3	chr3	8962729	8962929	+	720.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	1317.0	NM_001025262	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-42637404-4	chr10	42637304	42637504	+	761.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41512.0	NM_172416	14628.0	Mm.46636	NM_172416	ENSMUSG00000038280	Ostm1	1200002H13Rik|HSPC019|gl	osteopetrosis associated transmembrane protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-97784874-4	chr15	97784766	97784966	+	982.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026353, intron 1 of 2)	CpG	501.0	NM_026353	67739.0	Mm.28955	NM_026353	ENSMUSG00000081534	Slc48a1	4930570C03Rik	solute carrier family 48 (heme transporter), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-176853419-4	chr1	176853344	176853544	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357390, intron 8 of 18)	intron (NM_001357390, intron 8 of 18)	-17311.0	NR_037996	15365.0	Mm.441435	NR_037996		Hmga2-ps1	EG666235|Gm7996|Hmgic-ps1|[y]i-c	high mobility group AT-hook 2, pseudogene 1	pseudo	4.70492604574268	4.83002062531993	4.72606062425884	3.94653803450348	3.95727507880072	4.72962294974596	3.50817776392957	3.2848159094837	-0.794975679527393	0.0873393555540212	0.45416156997065
Merged-chr1-180293270-4	chr1	180293169	180293369	+	966.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36969.0	NM_001128605	19165.0	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125313142-2	chr6	125313042	125313242	+	750.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_010736, intron 2 of 9)	intron (NM_010736, intron 2 of 9)	743.0	NM_010736	17000.0	Mm.3122	NM_010736	ENSMUSG00000030339	Ltbr	AI256028|LTbetaR|Ltar|TNF-R-III|TNFCR|TNFR-RP|TNFR2-RP|TNFRrp|Tnfbr|Tnfrsf3	lymphotoxin B receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-119686339-3	chr8	119686217	119686417	+	855.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_023395, exon 6 of 7)	exon (NM_023395, exon 6 of 7)	-13692.0	NM_026922	69047.0	Mm.46251	NM_026922	ENSMUSG00000034112	Atp2c2	1810010G06Rik|Spca2|mKIAA0703	ATPase, Ca++ transporting, type 2C, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-82023907-4	chr11	82023824	82024024	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11653.0	NM_011333	20296.0	Mm.290320	NM_011333	ENSMUSG00000035385	Ccl2	AI323594|HC11|JE|MCAF|MCP-1|MCP1|SMC-CF|Scya2|Sigje	chemokine (C-C motif) ligand 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129675128-4	chr2	129675053	129675253	+	866.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23505.0	NM_001286502	18610.0	Mm.6239	NM_018863	ENSMUSG00000027400	Pdyn	Dyn	prodynorphin	protein-coding	3.04750803664956	3.21792786084052	3.46479842102227	3.02334218205063	2.98568892569722	3.60514763051096	3.02652719142792	3.65683928770736	0.257892069128341	0.65789731363727	0.988704682801132
Merged-chr10-62726073-3	chr10	62725968	62726168	+	812.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033260)	promoter-TSS (NM_001033260)	31.0	NM_001033260	216021.0	Mm.39821	NM_001033260	ENSMUSG00000036923	Stox1	4732470K04Rik|Gm63	storkhead box 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-80035662-3	chr15	80035540	80035740	+	963.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20832.0	NM_011057	18591.0	Mm.144089	NM_011057	ENSMUSG00000000489	Pdgfb	PDGF-B|Sis	platelet derived growth factor, B polypeptide	protein-coding	2.4364574812689	1.77092331554017	2.92417351781208	2.20678989104303	3.1638154472739	1.78289453121663	2.66483805063257	2.85702207558889	0.631873101858098	0.447069786992791	0.914498173479176
Merged-chr5-140597342-4	chr5	140597214	140597414	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10027.0	NM_008494	16848.0	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-89549069-2	chr1	89548969	89549169	+	580.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037136, intron 1 of 16)	intron (NM_001037136, intron 1 of 16)	94258.0	NM_001037136	347722.0	Mm.291135	NM_178119	ENSMUSG00000055013	Agap1	Centg2|Ggap1|R75364|mKIAA1099	ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-24416264-4	chr5	24416151	24416351	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001310474, exon 4 of 10)	exon (NM_001310474, exon 4 of 10)	2800.0	NM_001310474	171209.0	Mm.299636	NM_183000	ENSMUSG00000038276	Asic3	AW742291|Accn3|DRASIC|SLNAC1|TNAC1	acid-sensing (proton-gated) ion channel 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-34254911-4	chr13	34254818	34255018	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033167, intron 3 of 10)	intron (NM_001033167, intron 3 of 10)	90264.0	NM_001033167	73102.0	Mm.23932	NM_001033167	ENSMUSG00000038267	Slc22a23	3110004L20Rik	solute carrier family 22, member 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-122008901-4	chr10	122008777	122008977	+	900.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081037, intron 1 of 21)	intron (NM_001081037, intron 1 of 21)	38438.0	NM_001242411	117600.0	Mm.288698	NM_001081037	ENSMUSG00000020121	Srgap1	4930572H05Rik|Arhgap13	SLIT-ROBO Rho GTPase activating protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-139974529-3	chr7	139974440	139974640	+	974.7333369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347613, intron 5 of 5)	intron (NM_001347613, intron 5 of 5)	4215.0	NM_001347614	381933.0	Mm.440431	NM_001033465	ENSMUSG00000073795	6430531B16Rik	Gm1093	RIKEN cDNA 6430531B16 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-149285440-2	chr5	149285340	149285540	+	738.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009663, intron 4 of 4)	intron (NM_009663, intron 4 of 4)	20436.0	NM_009663	11690.0	Mm.19844	NM_009663	ENSMUSG00000060063	Alox5ap	Flap	arachidonate 5-lipoxygenase activating protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-142097030-1	chr4	142096930	142097130	+	670.0	f1_balb.idr	Intergenic	Intergenic	-12726.0	NM_145402	214359.0	Mm.27587	NM_145402	ENSMUSG00000040616	Tmem51	BC003277	transmembrane protein 51	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-107432320-4	chr11	107432232	107432432	+	860.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 1 of 9)	intron (NR_153311, intron 1 of 9)	38388.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-79931216-2	chr15	79931115	79931315	+	630.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144811, intron 1 of 6)	intron (NM_144811, intron 1 of 6)	1431.0	NM_144811	52609.0	Mm.323442	NM_144811	ENSMUSG00000053411	Cbx7	1600014J01Rik|AI851678|D15Ertd417e	chromobox 7	protein-coding	2.3663514524177	2.54117269032229	1.42827911019299	2.7545227210582	2.17764104456598	2.43615813013523	2.35637743261452	2.68738709649425	0.126785311682128	0.88343698412495	0.998431161219273
Merged-chr4-107254533-2	chr4	107254433	107254633	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029985)	promoter-TSS (NM_029985)	630.0	NM_028394	72938.0	Mm.21787	NM_028394	ENSMUSG00000063172	Hspb11	2900042B11Rik|IFT25|PP25	heat shock protein family B (small), member 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19002973-4	chr7	19002857	19003057	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1108.0	NM_178757	272359.0	Mm.274237	NM_178757	ENSMUSG00000044030	Irf2bp1	6330414O09Rik|C530033F24	interferon regulatory factor 2 binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-53475684-3	chr17	53475550	53475750	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3584.0	NM_025887	271457.0	Mm.329123	NM_025887	ENSMUSG00000017831	Rab5a	2410015H04Rik|AI663973|AU021172|nnyRab5a	RAB5A, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-101949448-4	chr5	101949347	101949547	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 9 of 66)	intron (NM_172882, intron 9 of 66)	120474.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80223331-4	chr10	80223231	80223431	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 1 of 4)	RLTR13C2|LTR|ERVK	-3267.0	NM_023431	68114.0	Mm.273418	NM_023431	ENSMUSG00000020156	Mum1	2610019J09|9430059D04Rik|UBE-1C2	melanoma associated antigen (mutated) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-139689890-1	chr4	139689790	139689990	+	542.0	f1_c57bl6.idr	Intergenic	Intergenic	36352.0	NM_031873	83770.0	Mm.190612	NM_031873	ENSMUSG00000028738	Tas1r2	Gpr71|T1r2|TR2	taste receptor, type 1, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-58502104-4	chr3	58502015	58502215	+	745.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23706.0	NM_001005509	229317.0	Mm.21617	NM_001005509	ENSMUSG00000027810	Eif2a	D030048D22|D3Ertd194e	eukaryotic translation initiation factor 2A	protein-coding	3.10715223719235	3.93301583191266	1.90702329763674	3.11122284311966	3.33531714284708	2.61234591832288	3.13387320058382	2.9388343003668	-0.277200125520696	0.692817410731189	0.99740158133691
Merged-chr12-54806192-2	chr12	54806092	54806292	+	796.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10530.0	NM_026998	72183.0	Mm.28240	NM_026998	ENSMUSG00000005656	Snx6	2010006G21Rik|2610032J07Rik|2810425K19Rik|AU018928|C85963	sorting nexin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-25789402-4	chr14	25789311	25789511	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20555.0	NM_001101433	71918.0	Mm.41904	NM_001101433	ENSMUSG00000055538	Zcchc24	2310047A01Rik	zinc finger, CCHC domain containing 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-55293210-4	chr3	55293116	55293316	+	673.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357475, intron 3 of 16)	intron (NM_001357475, intron 3 of 16)	50852.0	NM_001357466	13175.0	Mm.393242	NM_019978	ENSMUSG00000027797	Dclk1	1700113D08Rik|2810480F11Rik|AI836758|Click-I|Cpg16|Dcamkl1|Dcl|Dclk|mKIAA0369	doublecortin-like kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-98794906-2	chr15	98794806	98795006	+	681.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5049.0	NM_021279	22408.0	Mm.1123	NM_021279	ENSMUSG00000022997	Wnt1	Int-1|Wnt-1|sw|swaying	wingless-type MMTV integration site family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-92461413-2	chr5	92461301	92461501	+	888.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_007644, intron 3 of 11)	B1F|SINE|Alu	2844.0	NR_105843	102466159.0		NR_105843	ENSMUSG00000099160	Mir6415	Gm27714|mmu-mir-6415	microRNA 6415	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36365215-4	chr18	36365123	36365323	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081365, intron 1 of 2)	intron (NM_001081365, intron 1 of 2)	16599.0	NM_001081365	66060.0	Mm.272527	NM_001081365	ENSMUSG00000046727	Cystm1	0610010O12Rik	cysteine-rich transmembrane module containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-20696314-2	chr14	20696214	20696414	+	661.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_028428, exon 2 of 3)	exon (NM_028428, exon 2 of 3)	1346.0	NM_028428	73068.0	Mm.277552	NM_028428	ENSMUSG00000039357	Fut11	3110009G03Rik|AI317183	fucosyltransferase 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19308035-7	chr7	19307839	19308039	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347586, intron 1 of 4)	intron (NM_001347586, intron 1 of 4)	2106.0	NM_008036	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-34463464-2	chr1	34463364	34463564	+	880.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011206, intron 4 of 14)	intron (NM_011206, intron 4 of 14)	3718.0	NM_011206	19253.0	Mm.361	NM_011206	ENSMUSG00000026126	Ptpn18	FLP1|HSCF|PTP-HSCF|PTP-K1|Ptpk1	protein tyrosine phosphatase, non-receptor type 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-181257809-4	chr1	181257708	181257908	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45830.0	NM_145514	226757.0	Mm.289082	NM_145514	ENSMUSG00000038733	Wdr26	1600024A01Rik|AA693241|AI447817|AU044014|C77982|Gid7	WD repeat domain 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-24438074-3	chr18	24437980	24438180	+	857.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8910.0	NR_029573	387182.0		NR_029573	ENSMUSG00000065532	Mir187	Mirn187|mir-187|mmu-mir-187	microRNA 187	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-55244307-4	chr9	55244207	55244407	+	845.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_032002, intron 3 of 7)	intron (NM_032002, intron 3 of 7)	35372.0	NM_028049	71999.0	Mm.276429	NM_028049	ENSMUSG00000032309	Fbxo22	0610033L19Rik|1600016C16Rik	F-box protein 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-92897090-2	chr16	92896990	92897190	+	801.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	-71016.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-110496327-2	chr11	110496126	110496326	+	631.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356352, intron 7 of 11)	intron (NM_001356352, intron 7 of 11)	16886.0	NM_001356346	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	1.95522125385596	2.87059590417496	1.78874572659224	2.31504351025483	1.82936650196239	2.80422767099705	1.32059907132118	2.78395508974141	0.0816077927963868	0.931519897284721	0.998431161219273
Merged-chr8-115709185-2	chr8	115709085	115709285	+	744.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2291.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71179058-4	chr17	71178971	71179171	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MamGypLTR1b|LTR|Gypsy	-4461.0	NM_001357791	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-44926477-4	chr13	44926352	44926552	+	749.858337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025772, intron 8 of 9)	Lx7|LINE|L1	75644.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-78626956-2	chr16	78626856	78627056	+	738.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50268.0	NM_025967	67102.0	Mm.37332	NM_025967	ENSMUSG00000022864	D16Ertd472e	1700010I10Rik|2310009O17Rik|E330003K22Rik|Eurl	DNA segment, Chr 16, ERATO Doi 472, expressed	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-76856752-3	chr11	76856653	76856853	+	849.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9745.0	NM_007754	12874.0	Mm.276736	NM_007754	ENSMUSG00000020841	Cpd	AA960140|AW322530|D830034L15Rik	carboxypeptidase D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-44300943-4	chr4	44300844	44301044	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010790)	promoter-TSS (NM_010790)	27.0	NM_010790	17279.0	Mm.268668	NM_010790	ENSMUSG00000035683	Melk	AI327312|MPK38|mKIAA0175	maternal embryonic leucine zipper kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-32695330-2	chr9	32695230	32695430	+	876.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011808)	promoter-TSS (NM_011808)	-712.0	NM_011808	23871.0	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124730361-3	chr6	124730263	124730463	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077705, intron 3 of 15)	intron (NM_001077705, intron 3 of 15)	2791.0	NM_013545	15170.0	Mm.271799	NM_013545	ENSMUSG00000004266	Ptpn6	70Z-SHP|Hcph|PTPTY-42|Ptp1C|SH-PTP1|SHP-1|hcp|me	protein tyrosine phosphatase, non-receptor type 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-40799964-4	chr3	40799850	40800050	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173169)	promoter-TSS (NM_173169)	-1.0	NM_173169	20873.0	Mm.3794	NM_011495	ENSMUSG00000025758	Plk4	1700028H20|AI385771|Sak|Stk18	polo like kinase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-54088350-4	chr6	54088251	54088451	+	758.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163640, intron 1 of 12)	intron (NM_001163640, intron 1 of 12)	48419.0	NM_001163640	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-73108787-2	chr17	73108687	73108887	+	889.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081071, intron 1 of 5)	intron (NM_001081071, intron 1 of 5)	802.0	NM_001177967	225010.0	Mm.329194	NM_001081071	ENSMUSG00000054469	Lclat1	AI181996|Agpat8|Alcat1|Gm91|Lycat	lysocardiolipin acyltransferase 1	protein-coding	-1.52696403314699	-1.49523967873556	-1.5048333853602	-1.51271394162622	-1.52473704212565	-1.49316068248889	-1.50266158046844	-1.06847079017215	2.01069003169785	0.564432837776867	1
Merged-chr2-6363391-4	chr2	6363285	6363485	+	988.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181399, intron 1 of 13)	intron (NM_181399, intron 1 of 13)	10649.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-84798108-2	chr11	84798008	84798208	+	987.6666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21407.0	NM_145433	217038.0	Mm.280825	NM_145433	ENSMUSG00000018405	Mrm1	A530065E19Rik	mitochondrial rRNA methyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-150997751-2	chr1	150997651	150997851	+	639.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-4316.0	NM_001024720	545370.0	Mm.379425	NM_001024720	ENSMUSG00000066842	Hmcn1	EG545370|FIBL-6|Gm201	hemicentin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-72360760-2	chr4	72360660	72360860	+	737.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_T|LINE|L1	159516.0	NR_027923	68285.0	Mm.37541	NR_027923		C630043F03Rik	AI851307	RIKEN cDNA C630043F03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-151960325-2	chr1	151960225	151960425	+	556.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_197990, intron 3 of 5)	intron (NM_197990, intron 3 of 5)	129995.0	NM_197990	69399.0	Mm.278031	NM_197990	ENSMUSG00000032666	1700025G04Rik	2610510E02Rik|2900042O04Rik	RIKEN cDNA 1700025G04 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101263967-2	chr15	101263867	101264067	+	966.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2879.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	-0.973244663428994	-0.952315594721777	-0.00450891433157474	-0.968117103546747	-0.972477992091202	-0.949249181104308	-0.963262521912125	-0.967581074445158	-3.30458610020401	0.291235735201707	1
Merged-chr10-120978682-7	chr10	120978584	120978784	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081193, exon 1 of 13)	exon (NM_001081193, exon 1 of 13)	646.0	NM_001081193	380664.0	Mm.339371	NM_001081193	ENSMUSG00000048661	Lemd3	AI316861|Man1	LEM domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-170868682-4	chr1	170868560	170868760	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081304)	promoter-TSS (NM_001081304)	-889.0	NM_001081304	226641.0	Mm.377046	NM_001081304	ENSMUSG00000026663	Atf6	9130025P16Rik|9630036G24|AA789574|Atf6alpha|ESTM49	activating transcription factor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71711095-3	chr17	71711031	71711231	+	864.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177087, intron 14 of 19)	L2|LINE|L2	37870.0	NM_177087	320159.0	Mm.187372	NM_177087	ENSMUSG00000045761	Togaram2	4632412N22Rik|Fam179a	TOG array regulator of axonemal microtubules 2	protein-coding	0.79510295694722	1.18836052001281	0.395511945377534	0.388431487802417	0.804753762729509	1.20181005935557	0.397525485034737	0.389672646886956	0.0401623486874807	0.982191748031873	1
Merged-chr14-70074949-4	chr14	70074836	70075036	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2509.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33875962-4	chr16	33875871	33876071	+	862.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010580, exon 4 of 15)	exon (NM_010580, exon 4 of 15)	46306.0	NM_001145884	16419.0	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133632216-3	chr4	133632120	133632320	+	911.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001017968, intron 1 of 7)	intron (NM_001017968, intron 1 of 7)	1209.0	NM_001017968	503610.0	Mm.331948	NM_001017968	ENSMUSG00000037553	Zdhhc18	-	zinc finger, DHHC domain containing 18	protein-coding	1.17879520100695	1.05386789535701	1.83115289975123	1.53835326185548	1.5925798998318	2.02471965286066	1.8462723371158	1.54603120089836	1.07746032432467	0.34408993288261	0.845288905553963
Merged-chr17-88123125-4	chr17	88123049	88123249	+	897.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2363.0	NM_001190356	225058.0	Mm.312053	NM_001190356		Gm4832	EG225058	predicted gene 4832	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-171358428-3	chr2	171358362	171358562	+	916.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	604337.0	NR_040509	75655.0	Mm.396203	NR_040509	ENSMUSG00000086823	1700028P15Rik	-	RIKEN cDNA 1700028P15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-58572881-4	chr13	58572782	58572982	+	858.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022317, intron 8 of 17)	intron (NM_022317, intron 8 of 17)	37995.0	NM_022317	114304.0	Mm.18188	NM_022317	ENSMUSG00000021553	Slc28a3	Cnt3	solute carrier family 28 (sodium-coupled nucleoside transporter), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116694742-3	chr11	116694579	116694779	+	965.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009180)	promoter-TSS (NM_009180)	-19.0	NM_009180	20446.0	Mm.3947	NM_009180	ENSMUSG00000057286	St6galnac2	II|ST6GalNAc|Siat7|Siat7b	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-34372401-2	chr18	34372301	34372501	+	774.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007874, intron 2 of 4)	intron (NM_007874, intron 2 of 4)	1014.0	NM_007874	13476.0	Mm.280075	NM_007874	ENSMUSG00000005873	Reep5	AI324241|AU022809|AW495741|DP1/TB2|Dp1|R74856|TB2/DP1	receptor accessory protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126884102-2	chr7	126884002	126884202	+	767.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001163775, exon 1 of 16)	5' UTR (NM_001163775, exon 1 of 16)	865.0	NM_001163775	381921.0	Mm.259634	NM_001163774	ENSMUSG00000059981	Taok2	1110033K02Rik|B230344N16|MAP3K17|PSK|PSK1|TAO1|TAO2|mKIAA0881	TAO kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-14064849-4	chr13	14064726	14064926	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_198122, exon 2 of 23)	5' UTR (NM_198122, exon 2 of 23)	1042.0	NM_198122	94246.0	Mm.439784	NM_194262	ENSMUSG00000039219	Arid4b	BCAA|BRCAA1|RBBP1L1|Rbp1l1|SAP180	AT rich interactive domain 4B (RBP1-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5843134-4	chr19	5843037	5843237	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_003513, exon 1 of 1)	non-coding (NR_003513, exon 1 of 1)	2341.0	NR_131212	66961.0	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-132653241-4	chr7	132653117	132653317	+	994.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029609, intron 6 of 6)	intron (NM_029609, intron 6 of 6)	42574.0	NM_029609	76429.0	Mm.276721	NM_029609	ENSMUSG00000030946	Lhpp	2310007H09Rik	phospholysine phosphohistidine inorganic pyrophosphate phosphatase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-93093278-4	chr5	93093164	93093364	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347377)	promoter-TSS (NM_001347377)	-152.0	NM_001009818	52398.0	Mm.394184	NM_001009818	ENSMUSG00000058013	Sept11	6230410I01Rik|AW548875|D5Ertd606e	septin 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120445443-2	chr8	120445343	120445543	+	782.583313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43423.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-25561355-4	chr9	25561254	25561454	+	862.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 3 of 7)	intron (NM_026189, intron 3 of 7)	79757.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-22702069-2	chr10	22701969	22702169	+	795.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_178934, exon 5 of 5)	exon (NM_178934, exon 5 of 5)	27363.0	NR_106123	102465768.0		NR_106123	ENSMUSG00000098714	Mir7663	Gm28034|mmu-mir-7663	microRNA 7663	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-77549449-4	chr8	77549370	77549570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081240)	promoter-TSS (NM_001081240)	73.0	NM_001081240	102182.0	Mm.197630	NM_178903	ENSMUSG00000037134	Prmt9	AI931714|Prmt10	protein arginine methyltransferase 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-96542581-4	chr13	96542467	96542667	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164222)	promoter-TSS (NM_001164222)	12.0	NM_012048	27015.0	Mm.89926	NM_012048	ENSMUSG00000021668	Polk	DINP|Dinb1	polymerase (DNA directed), kappa	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-119052561-1	chr14	119052461	119052661	+	607.0	f0_balb.idr	intron (NM_001081252, intron 16 of 38)	ORR1A2-int|LTR|ERVL-MaLR	-46404.0	NR_153786	102635192.0	Mm.398079	NR_153786		Gm16835	-	predicted gene, 16835	ncRNA	-0.816197293366231	-0.80724490921107	-0.810191369837912	-0.396342611380217	-0.345796718968459	-0.804586221216491	-0.809543431923338	-0.812059261816221	0.217041845743973	0.943328585514677	1
Merged-chr9-6723388-2	chr9	6723288	6723488	+	556.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-453202.0	NM_001357484	76863.0	Mm.27293	NM_029775	ENSMUSG00000032002	Dcun1d5	3110001A18Rik|4833420K19Rik|AW060460|D430047L21Rik	DCN1, defective in cullin neddylation 1, domain containing 5 (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-25084017-3	chr5	25083915	25084115	+	974.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145401, intron 1 of 15)	intron (NM_145401, intron 1 of 15)	16627.0	NM_145401	108099.0	Mm.33649	NM_145401	ENSMUSG00000028944	Prkag2	2410051C13Rik|AAKG|AAKG2|AI854673|H91620p|WPWS	protein kinase, AMP-activated, gamma 2 non-catalytic subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-93962139-2	chr15	93962039	93962239	+	826.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35028.0	NR_045737	77248.0	Mm.410768	NR_045737	ENSMUSG00000116360	9430014N10Rik	-	RIKEN cDNA 9430014N10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-49705603-4	chr18	49705542	49705742	+	889.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170960, intron 2 of 3)	Lx9|LINE|L1	49959.0	NM_001170960	68857.0	Mm.96010	NM_026854	ENSMUSG00000024505	Dtwd2	1190002H09Rik|8030470C17Rik|AI414673|BB115449	DTW domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-88845716-4	chr18	88845626	88845826	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48481.0	NM_018821	54607.0	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-167337322-4	chr1	167337211	167337411	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12680.0	NM_019993	56752.0	Mm.292539	NM_019993	ENSMUSG00000026687	Aldh9a1	AA139417|Abaldh|ESTM40|TMABA-DH|Tmabadh	aldehyde dehydrogenase 9, subfamily A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-83593667-2	chr8	83593566	83593766	+	624.0	f0_c57.idr|f1_c57bl6.idr	intron (NM_134118, intron 1 of 12)	intron (NM_134118, intron 1 of 12)	825.0	NM_027179	106529.0	Mm.352239	NM_027179	ENSMUSG00000031708	Tecr	2410016D23Rik|A230102P12Rik|AI173355|D17Ertd178e|Gpsn2|SC2	trans-2,3-enoyl-CoA reductase	protein-coding	2.64509311391857	2.23312815539234	2.44601844782251	3.07523557090685	2.39124732072642	2.54590601242715	2.46442092612701	2.50742088868536	-0.365724021008865	0.6272847190463	0.980912176761026
Merged-chr2-27428248-4	chr2	27428131	27428331	+	918.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009500)	promoter-TSS (NM_009500)	-623.0	NM_009500	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-80719383-3	chr17	80719246	80719446	+	936.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360278, intron 1 of 33)	Charlie1|DNA|hAT-Charlie	8679.0	NM_001360278	225028.0	Mm.311948	NM_001081357	ENSMUSG00000024242	Map4k3	4833416M01Rik|4833416M07Rik|9530052P13Rik|Glk|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1	mitogen-activated protein kinase kinase kinase kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-132343396-2	chr1	132343296	132343496	+	746.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24552.0	NM_001311108	68875.0	Mm.273785	NM_178874	ENSMUSG00000042066	Tmcc2	1110063G11Rik	transmembrane and coiled-coil domains 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-59544181-4	chr11	59544093	59544293	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153314, intron 2 of 9)	intron (NR_153314, intron 2 of 9)	1507.0	NR_153314	216799.0	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-127261279-3	chr1	127261170	127261370	+	823.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145128, intron 2 of 17)	RLTR28|LTR|ERVL	56284.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-127162415-2	chr6	127162315	127162515	+	863.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_040275, intron 1 of 1)	intron (NR_040275, intron 1 of 1)	-11367.0	NM_009829	12444.0	Mm.333406	NM_009829	ENSMUSG00000000184	Ccnd2	2600016F06Rik|AI256817|BF642806|C86853|Vin-1|Vin1|cD2	cyclin D2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-28011625-4	chr19	28011538	28011738	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011265)	promoter-TSS (NM_011265)	-472.0	NM_001166414	19726.0	Mm.313321	NM_011265	ENSMUSG00000040929	Rfx3	C230093O12Rik|MRFX3	regulatory factor X, 3 (influences HLA class II expression)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-122799694-4	chr10	122799417	122799617	+	731.660706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110218, intron 2 of 9)	intron (NM_001110218, intron 2 of 9)	120202.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	1.41403896943866	2.2009726331002	1.99985258636146	1.49213509631714	1.42600651725315	1.10276075362248	2.91868848371476	1.67099398702801	0.477582509269561	0.662631395739526	0.991056031673253
Merged-chr19-23058580-2	chr19	23058480	23058680	+	662.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-82646.0	NM_010638	16601.0	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|Gm9971	Kruppel-like factor 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100942063-2	chr7	100942002	100942202	+	661.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183168, intron 1 of 2)	intron (NM_183168, intron 1 of 2)	-9941.0	NM_001081116	207212.0	Mm.29954	NM_001081116	ENSMUSG00000032875	Arhgef17	8030463K16|AI428794|AW558066|BC035332|mKIAA0337	Rho guanine nucleotide exchange factor (GEF) 17	protein-coding	0.621718747758331	0.885716837368077	0.345252453621823	0.338648351461185	1.25933598841328	0.896073397611116	0.347131927442311	0.339805447406876	1.12446300489894	0.541279242938903	1
Merged-chr1-135267739-4	chr1	135267637	135267837	+	898.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159624, intron 5 of 9)	intron (NM_001159624, intron 5 of 9)	-9265.0	NM_007921	13710.0	Mm.441439	NM_007921	ENSMUSG00000003051	Elf3	ESE-1|ESX|jen	E74-like factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4136148-4	chr19	4136121	4136321	+	896.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_144532, exon 5 of 6)	exon (NM_144532, exon 5 of 6)	3388.0	NM_144532	73660.0	Mm.379226	NM_144532	ENSMUSG00000024842	Cabp4	2410038D05Rik	calcium binding protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-56862370-3	chr8	56862278	56862478	+	857.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	311244.0	NM_015791	50753.0	Mm.251174	NM_015791	ENSMUSG00000038206	Fbxo8	Fbx8	F-box protein 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-42264343-4	chr9	42264224	42264424	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172769)	promoter-TSS (NM_172769)	-24.0	NM_172769	235293.0	Mm.32700	NM_172769	ENSMUSG00000032018	Sc5d	A830037K02|A830073K23Rik|Sc5dl	sterol-C5-desaturase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-57347125-4	chr17	57347005	57347205	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11581.0	NM_001355723	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-58503792-4	chr13	58503692	58503892	+	968.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-100449.0	NM_001301341	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-52000253-4	chr16	52000158	52000358	+	881.162476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12971.0	NR_153657	629091.0	Mm.364775	NR_153657		Gm29686	-	predicted gene, 29686	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-106136735-3	chr8	106136670	106136870	+	938.633301	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_176838, exon 1 of 15)	5' UTR (NM_176838, exon 1 of 15)	204.0	NM_176838	77411.0	Mm.183003	NM_176838	ENSMUSG00000084128	Esrp2	9530027K23Rik|Rbm35b	epithelial splicing regulatory protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-112286484-2	chr5	112286384	112286584	+	963.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001326590, intron 1 of 5)	intron (NM_001326590, intron 1 of 5)	9793.0	NM_009419	22022.0	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-91008960-3	chr12	91008862	91009062	+	996.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181815, intron 24 of 25)	intron (NM_181815, intron 24 of 25)	-36886.0	NR_045858	71349.0	Mm.442093	NR_045858	ENSMUSG00000085004	5430427M07Rik	-	RIKEN cDNA 5430427M07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-86812901-3	chr3	86812807	86813007	+	917.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195500, intron 8 of 11)	intron (NM_001195500, intron 8 of 11)	107977.0	NM_001195499	70762.0	Mm.44490	NM_027539	ENSMUSG00000028078	Dclk2	6330415M09Rik|AU044875|CL2|CLICK2|Click-II|Dcamkl2	doublecortin-like kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-169008483-3	chr2	169008369	169008569	+	663.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30200.0	NR_040326	75508.0	Mm.271256	NR_040326	ENSMUSG00000086348	1700017J07Rik	-	RIKEN cDNA 1700017J07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-30908140-4	chr14	30908046	30908246	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008407)	TTS (NM_008407)	15441.0	NM_008407	16426.0	Mm.4517	NM_008407	ENSMUSG00000006522	Itih3	AW108094|ITI-HC3|Intin3|Itih-3	inter-alpha trypsin inhibitor, heavy chain 3	protein-coding	-2.18292257394068	-2.15545247547656	-2.03304972317742	-2.17058342868585	-2.18099422382073	-2.1536522739386	-2.16187909550322	-2.16936197735154	-0.683654500252594	0.846597994014493	1
Merged-chr19-34444929-3	chr19	34444883	34445083	+	823.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	30152.0	NM_009890	12642.0	Mm.30824	NM_009890	ENSMUSG00000050370	Ch25h	AI462618|m25OH	cholesterol 25-hydroxylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83693989-4	chr6	83693881	83694081	+	867.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_002871, intron 5 of 5)	intron (NR_002871, intron 5 of 5)	-16124.0	NM_144943	246278.0	Mm.136079	NM_144943	ENSMUSG00000034783	Cd207	-	CD207 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-29211468-4	chr7	29211375	29211575	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164658, intron 1 of 27)	intron (NM_001164658, intron 1 of 27)	2558.0	NM_001164658	320225.0	Mm.349382	NM_001039721	ENSMUSG00000049676	Catsperg1	A230107C01Rik|Catsperg	cation channel sperm associated auxiliary subunit gamma 1	protein-coding	6.20084817429305	6.41903261593238	6.62085680117436	6.19623479033893	6.48006130254919	6.54200992819157	6.72569013797278	5.8838432015419	0.0771761813122801	0.734296871531114	0.998431161219273
Merged-chr13-74563981-4	chr13	74563875	74564075	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70025.0	NM_146231	235956.0		NM_146231	ENSMUSG00000069208	Zfp825	-	zinc finger protein 825	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-50904688-2	chr9	50904588	50904788	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178710, intron 9 of 15)	Lx5|LINE|L1	47764.0	NM_001286553	73699.0	Mm.7726	NM_028614	ENSMUSG00000032058	Ppp2r1b	2410091N08Rik|AI790395	protein phosphatase 2, regulatory subunit A, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117991917-4	chr11	117991813	117992013	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151726, intron 1 of 9)	intron (NR_151726, intron 1 of 9)	5056.0	NR_151726	74451.0	Mm.28864	NM_133757	ENSMUSG00000017715	Pgs1	2610019F11Rik|4933424M23Rik|SAF	phosphatidylglycerophosphate synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-98929169-4	chr13	98929044	98929244	+	830.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2760.0	NM_178716	238799.0	Mm.173286	NM_178716	ENSMUSG00000009470	Tnpo1	AU021749|D13Ertd688e|IPO2|Kpnb2|MIP|MIP1|TRN	transportin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-91844786-2	chr12	91844686	91844886	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039089, intron 1 of 20)	intron (NM_001039089, intron 1 of 20)	4371.0	NM_001039089	20338.0	Mm.250605	NM_011344	ENSMUSG00000020964	Sel1l	AW493766|Sel1h|mKIAA4137	sel-1 suppressor of lin-12-like (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36133765-4	chr1	36133679	36133879	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10534.0	NR_105862	102465540.0		NR_105862	ENSMUSG00000098752	Mir6897	Gm27652|mmu-mir-6897	microRNA 6897	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-193839095-3	chr1	193839011	193839211	+	640.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-331581.0	NR_029592	387201.0		NR_029592	ENSMUSG00000065533	Mir205	Mirn205|mir-205|mmu-mir-205	microRNA 205	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-3915593-4	chr7	3915485	3915685	+	978.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011087)	promoter-TSS (NM_011087)	-84.0	NR_028115	18726.0	Mm.440989	NM_011090	ENSMUSG00000030427	Lilra6	7M1|Pira3	leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71184415-2	chr17	71184330	71184530	+	746.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_022882, intron 1 of 19)	intron (NM_022882, intron 1 of 19)	452.0	NM_022882	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-102100380-3	chr15	102100276	102100476	+	841.138916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2558.0	NM_001355636	209039.0	Mm.29389	NM_153533	ENSMUSG00000037003	Tns2	C1-ten|Tenc1|nep|nph	tensin 2	protein-coding	1.16273670772979	1.92913024102239	1.96871315126558	1.80153821701313	0.970337444650488	1.94475123171982	1.98567393187036	0.997341692226877	-0.521419472636327	0.670619288643819	0.99359666617512
Merged-chr15-38247344-4	chr15	38247242	38247442	+	957.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28139.0	NM_008757	18285.0	Mm.252830	NM_008757	ENSMUSG00000061923	Odf1	-	outer dense fiber of sperm tails 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-59267480-3	chr4	59267380	59267580	+	750.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_105031, intron 3 of 3)	ORR1F|LTR|ERVL-MaLR	7429.0	NR_105031	101055769.0	Mm.421401	NR_105031		Gm12596	-	predicted gene 12596	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-79233916-3	chr3	79233809	79234009	+	859.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045502, intron 1 of 2)	intron (NR_045502, intron 1 of 2)	20990.0	NR_045502	70924.0	Mm.444622	NR_045502	ENSMUSG00000104585	4921511C10Rik	-	RIKEN cDNA 4921511C10 gene	ncRNA	1.73108465723701	1.62668035764352	2.20659580248303	1.82260521960064	1.85602511239864	1.63770936311297	2.39889202161879	1.14881942458498	-0.0423156056043811	0.968194964592775	0.998431161219273
Merged-chr8-126494623-4	chr8	126494523	126494723	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19558.0	NM_001159907	212728.0	Mm.482479	NM_001159907	ENSMUSG00000090290	Tarbp1	Gm17296|Gm179	TAR RNA binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124473464-2	chr5	124473364	124473564	+	559.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030259, intron 1 of 3)	intron (NM_030259, intron 1 of 3)	4771.0	NM_030259	80291.0	Mm.425280	NM_030259	ENSMUSG00000029401	Rilpl2	-	Rab interacting lysosomal protein-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-29826346-2	chr2	29826246	29826446	+	608.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-1043.0	NM_026615	68205.0	Mm.20273	NM_026615	ENSMUSG00000069020	Urm1	2900073H19Rik	ubiquitin related modifier 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-108208872-2	chr6	108208772	108208972	+	646.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4224.0	NM_010585	16438.0	Mm.227912	NM_010585	ENSMUSG00000030102	Itpr1	D6Pas2|Gm10429|IP3R 1|IP3R1|InsP3R|Ip3r|Itpr-1|P400|Pcp-1|Pcp1|insP3R1|opt|wblo	inositol 1,4,5-trisphosphate receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150504876-3	chr4	150504772	150504972	+	827.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 8 of 22)	intron (NM_001085492, intron 8 of 22)	147302.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-8816929-4	chr10	8816826	8817026	+	974.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 2 of 19)	intron (NM_175155, intron 2 of 19)	69144.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-20379482-2	chr8	20379382	20379582	+	948.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16280.0	NM_001177408	100040599.0	Mm.491087	NM_001177408	ENSMUSG00000074449	Gm15319	-	predicted gene 15319	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-112943459-2	chr12	112943359	112943559	+	617.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1317.0	NM_001316724	66174.0	Mm.7070	NM_025399	ENSMUSG00000002804	Nudt14	1110030M18Rik|UGPPase	nudix (nucleoside diphosphate linked moiety X)-type motif 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-112778384-4	chr6	112778306	112778506	+	971.1416630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080448, intron 5 of 21)	MIR3|SINE|MIR	-81736.0	NM_001167730	58186.0	Mm.103812	NM_021385	ENSMUSG00000030254	Rad18	2810024C04Rik|Rad18sc	RAD18 E3 ubiquitin protein ligase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-92100753-2	chr6	92100653	92100853	+	663.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347342, intron 1 of 14)	intron (NM_001347342, intron 1 of 14)	8320.0	NM_001347342	22026.0	Mm.87062	NM_011630	ENSMUSG00000005893	Nr2c2	TAK1|Tr4|mKIAA4145	nuclear receptor subfamily 2, group C, member 2	protein-coding	1.80474659796862	1.70027827800622	2.472652645182	1.76312922703217	2.13046989744318	1.25128536961064	2.49241852653583	1.7718191738625	0.0539745272827468	0.957667774042317	0.998431161219273
Merged-chr2-26476214-3	chr2	26476106	26476306	+	863.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008714, intron 14 of 33)	intron (NM_008714, intron 14 of 33)	-6087.0	NR_105962	102465602.0		NR_105962	ENSMUSG00000098548	Mir6996	Gm27531|mmu-mir-6996	microRNA 6996	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-121293381-4	chr3	121293257	121293457	+	935.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155539, intron 1 of 2)	intron (NR_155539, intron 1 of 2)	1617.0	NM_024178	66789.0	Mm.269881	NM_024178	ENSMUSG00000039887	Alg14	5430428G01Rik|AI854024	asparagine-linked glycosylation 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-103327142-3	chr11	103327041	103327241	+	824.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17561.0	NM_133715	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-57729067-2	chr10	57728967	57729167	+	819.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039050, intron 4 of 4)	RMER6A|LTR|ERVK	-55856.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-114799875-2	chr9	114799775	114799975	+	985.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027294, intron 1 of 3)	intron (NM_027294, intron 1 of 3)	-17882.0	NM_001252479	102545.0	Mm.35600	NM_133978	ENSMUSG00000032436	Cmtm7	AI481279|Cklfsf7|LNV	CKLF-like MARVEL transmembrane domain containing 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-71104855-3	chr2	71104759	71104959	+	713.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13195.0	NM_028593	73649.0	Mm.45435	NM_028593	ENSMUSG00000027015	Cybrd1	2210407P13Rik|Dcytb	cytochrome b reductase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-58652745-4	chr1	58652695	58652895	+	972.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045007, intron 1 of 1)	intron (NR_045007, intron 1 of 1)	154.0	NR_045007	100504501.0	Mm.440933	NR_045007	ENSMUSG00000102059	Gm20257	-	caspase 8 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-136684726-3	chr3	136684631	136684831	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008913, intron 1 of 13)	intron (NM_008913, intron 1 of 13)	14665.0	NM_001293622	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-80197640-4	chr12	80197528	80197728	+	805.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134156, intron 4 of 20)	intron (NM_134156, intron 4 of 20)	62743.0	NM_134156	109711.0	Mm.253564	NM_134156	ENSMUSG00000015143	Actn1	3110023F10Rik|Actn1a	actinin, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-56296436-4	chr13	56296300	56296500	+	944.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_019568, exon 1 of 4)	5' UTR (NM_019568, exon 1 of 4)	151.0	NM_019568	57266.0	Mm.30211	NM_019568	ENSMUSG00000021508	Cxcl14	1110031L23Rik|1200006I23Rik|AI414372|BMAC|BRAK|KS1|Kec|MIP-2g|MIP2gamma|NJAC|Scyb14|bolekine	chemokine (C-X-C motif) ligand 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-38535264-4	chr6	38535184	38535384	+	999.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025363, intron 1 of 1)	intron (NM_025363, intron 1 of 1)	423.0	NM_025363	66117.0	Mm.158971	NM_025363	ENSMUSG00000019689	Fmc1	1110001J03Rik	formation of mitochondrial complex V assembly factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55286238-4	chr19	55286137	55286337	+	662.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027976, intron 12 of 21)	intron (NM_027976, intron 12 of 21)	29799.0	NM_001360595	66980.0	Mm.386789	NM_025883	ENSMUSG00000024982	Zdhhc6	2400007G07Rik|5930409M18Rik|AI462345|C77369|DHHC-6	zinc finger, DHHC domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-124573639-3	chr8	124573562	124573762	+	701.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2449.0	NM_023709	73647.0	Mm.6209	NM_023709	ENSMUSG00000031981	Capn9	2200003B16Rik|GC36|nCL-4|nCL4	calpain 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-149086717-4	chr3	149086590	149086790	+	823.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-132055.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	2.45356727371338	2.9472951928912	1.92997747149857	1.20849868761389	3.06129909563785	2.69682208777399	1.24835803064488	1.69821423087168	0.193911643472038	0.852767386133653	0.998431161219273
Merged-chr12-85338499-2	chr12	85338399	85338599	+	847.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145138, intron 1 of 21)	(CAAAAA)n|Simple_repeat|Simple_repeat	863.0	NM_145138	217718.0	Mm.29071	NM_145138	ENSMUSG00000034290	Nek9	C130021H08Rik	NIMA (never in mitosis gene a)-related expressed kinase 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-88627539-3	chr6	88627387	88627587	+	677.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001278671)	promoter-TSS (NM_001278671)	-39.0	NM_001278671	74589.0	Mm.196226	NM_029013	ENSMUSG00000033182	Kbtbd12	4833415F11Rik|4933428M03Rik|Klhdc6	kelch repeat and BTB (POZ) domain containing 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-92640243-2	chr1	92640143	92640343	+	966.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163425, intron 1 of 2)	intron (NM_001163425, intron 1 of 2)	1705.0	NR_028108	66915.0	Mm.30179	NM_001163425	ENSMUSG00000073616	Cops9	1110002M09Rik|Myeov2	COP9 signalosome subunit 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-37325961-2	chr10	37325861	37326061	+	578.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-187035.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4095819-2	chr19	4095719	4095919	+	871.6666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-1532.0	NM_026373	52004.0	Mm.29609	NM_026373	ENSMUSG00000024856	Cdk2ap2	5830466O21Rik|D19Ertd144e|Doc-1r	CDK2-associated protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-72712750-4	chr8	72712668	72712868	+	984.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_176940, exon 19 of 19)	3' UTR (NM_176940, exon 19 of 19)	-10502.0	NM_001113248	20467.0	Mm.2137	NM_009188	ENSMUSG00000031622	Sin3b	2810430C10Rik	transcriptional regulator, SIN3B (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139703058-2	chr5	139702958	139703158	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33275.0	NM_174850	231830.0	Mm.240510	NM_174850	ENSMUSG00000036718	Micall2	A930021H16Rik|JRAB|MICAL-L2|mFLJ00139	MICAL-like 2	protein-coding	-0.0517868372596766	-0.399525270627776	-0.233358957693233	-0.406142341435227	0.21586010457168	-0.398680210350809	-0.402441979035497	-0.405640407577171	0.516990460232761	0.839795988260772	1
Merged-chr8-46933861-4	chr8	46933759	46933959	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53028.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-3009973-1	chr18	3009873	3010073	+	675.5	f0_balb.idr	Intergenic	Intergenic	113439.0	NM_001167539	100312476.0	Mm.480293	NM_001167539	ENSMUSG00000091539	Vmn1r238	-	vomeronasal 1 receptor, 238	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-119313604-2	chr12	119313504	119313704	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-75328.0	NM_177290	320910.0	Mm.217000	NM_177290	ENSMUSG00000025321	Itgb8	4832412O06Rik	integrin beta 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-108429025-2	chr5	108428925	108429125	+	996.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008806, intron 19 of 21)	intron (NM_008806, intron 19 of 21)	5374.0	NR_154996	11958.0	Mm.136093	NM_007507	ENSMUSG00000050856	Atp5k	2610008D24Rik|Atp5i|Lfm1	ATP synthase, H+ transporting, mitochondrial F1F0 complex, subunit E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-28839499-2	chr2	28839399	28839599	+	621.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033294)	promoter-TSS (NM_001033294)	861.0	NM_172977	269252.0	Mm.26043	NM_172977	ENSMUSG00000035666	Gtf3c4	5330400C03|AI426938|AU014771|AU017413|KAT12|TFIIIC90	general transcription factor IIIC, polypeptide 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-62010678-2	chr11	62010578	62010778	+	977.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310526, intron 1 of 7)	intron (NM_001310526, intron 1 of 7)	53915.0	NM_001310526	432572.0	Mm.438022	NM_001029936	ENSMUSG00000042331	Specc1	2810012G08Rik|B230396K10Rik|Cytsb	sperm antigen with calponin homology and coiled-coil domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-27083114-2	chr3	27083014	27083214	+	678.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	70740.0	NM_007900	13605.0	Mm.261453	NM_007900	ENSMUSG00000027699	Ect2	AI528536	ect2 oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-52488442-2	chr6	52488342	52488542	+	769.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4009.0	NR_046049	74304.0	Mm.490579	NR_046049	ENSMUSG00000107895	1700094M24Rik	-	RIKEN cDNA 1700094M24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-154303008-2	chr2	154302908	154303108	+	799.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4236.0	NM_001025574	433492.0	Mm.330682	NM_001025574	ENSMUSG00000067996	Bpifb9b	5430413K10Rik|AI413838	BPI fold containing family B, member 9B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-11761731-1	chr11	11761631	11761831	+	608.0	f1_balb.idr	intron (NM_001025597, intron 7 of 7)	intron (NM_001025597, intron 7 of 7)	47231.0	NM_021891	60530.0	Mm.236114	NM_021891	ENSMUSG00000035455	Fignl1	-	fidgetin-like 1	protein-coding	-1.43172712806865	-1.3992492906874	-1.40907085678131	-1.41713858359971	-0.932192548427885	-1.39712091634321	-1.40684746950024	-1.41569446435649	2.19283191591698	0.528233640655333	1
Merged-chr4-120104793-3	chr4	120104693	120104893	+	767.194458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010657, intron 5 of 8)	intron (NM_010657, intron 5 of 8)	-56413.0	NM_007902	13615.0	Mm.284855	NM_007902	ENSMUSG00000028635	Edn2	ET-2|PPET2|VIC	endothelin 2	protein-coding	0.598045153520466	0.967524033264203	0.341379991454677	0.335877486864373	0.717346847085382	0.978880833789053	0.526012228945525	0.336839391443813	0.420783506406582	0.811908326182177	1
Merged-chr13-51849022-4	chr13	51848936	51849136	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011817)	TTS (NM_011817)	2361.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-64978935-4	chr11	64978822	64979022	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023479)	promoter-TSS (NM_023479)	-113.0	NM_023479	68626.0	Mm.157711	NM_023479	ENSMUSG00000020549	Elac2	1110017O07Rik|D11Wsu80e|Hpc2	elaC ribonuclease Z 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-146832097-1	chr5	146831997	146832197	+	583.5	f1_balb.idr	promoter-TSS (NM_019647)	promoter-TSS (NM_019647)	-793.0	NM_019647	19933.0	Mm.316592	NM_019647	ENSMUSG00000041453	Rpl21	8430440E03Rik|L21	ribosomal protein L21	protein-coding	-0.0698083569873629	-0.0544635661373421	-0.0594955107790599	0.355152386680249	0.572835970614224	-0.0533285936069026	0.397523565974528	-0.062697071804133	1.51033979403006	0.513718543882997	1
Merged-chr14-121352409-3	chr14	121352312	121352512	+	881.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145465, intron 1 of 10)	intron (NM_145465, intron 1 of 10)	26818.0	NM_145465	223255.0	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128429342-4	chr2	128429233	128429433	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028589)	promoter-TSS (NR_028589)	18.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	3.42108992440753	2.54883147213697	3.2302597366757	3.21761750550043	3.15090348888565	3.08468365404237	1.61738048970854	2.89009889423109	-0.579971560857503	0.424353747473567	0.901293602726532
Merged-chr6-124818073-4	chr6	124817988	124818188	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001326594, intron 15 of 19)	intron (NM_001326594, intron 15 of 19)	-3792.0	NM_009415	21991.0	Mm.4222	NM_009415	ENSMUSG00000023456	Tpi1	AI255506|TIM|Tpi|Tpi-1	triosephosphate isomerase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118172316-2	chr11	118172216	118172416	+	849.1999509999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001112700, intron 10 of 12)	intron (NM_001112700, intron 10 of 12)	40426.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-14867185-4	chr9	14867106	14867306	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010287, intron 3 of 3)	intron (NM_010287, intron 3 of 3)	6996.0	NM_010287	14608.0	Mm.4672	NM_010287	ENSMUSG00000031932	Gpr83	AW045253|Gir|Gpr72|RP105|RP39|RP82	G protein-coupled receptor 83	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-108335428-4	chr13	108335353	108335553	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178683, intron 2 of 10)	intron (NM_178683, intron 2 of 10)	19116.0	NM_178683	218581.0	Mm.32318	NM_178683	ENSMUSG00000021697	Depdc1b	9830132O03|AW260467|XTP1	DEP domain containing 1B	protein-coding	3.44371716353478	4.2149836007655	3.79778853936158	4.07317018214801	2.38553814069227	3.73871517652827	3.1586012982592	1.91619738916066	-1.43365349811269	0.0222223193733027	0.192739798439195
Merged-chr7-89217329-2	chr7	89217229	89217429	+	811.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360746, intron 5 of 14)	(CA)n|Simple_repeat|Simple_repeat	121458.0	NM_028343	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128917953-1	chr10	128917853	128918053	+	556.0	f1_balb.idr	exon (NM_134006, exon 3 of 5)	exon (NM_134006, exon 3 of 5)	1344.0	NM_001358527	19682.0	Mm.439856	NM_134006	ENSMUSG00000025350	Rdh5	9-cis|AI987873|RDH4|cRDH	retinol dehydrogenase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-35155839-4	chr15	35155726	35155926	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019635)	promoter-TSS (NM_019635)	-20.0	NM_019635	56274.0	Mm.262330	NM_019635	ENSMUSG00000022329	Stk3	0610042I06Rik|MST|Mst2|Mst3|Ste20|mess1	serine/threonine kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-72419221-2	chr8	72419121	72419321	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001122832, intron 1 of 15)	L2c|LINE|L2	2253.0	NM_001122832	13859.0	Mm.288894	NM_007944	ENSMUSG00000006276	Eps15l1	9830147J04Rik|AI593686|Eps15-rs|Eps15R	epidermal growth factor receptor pathway substrate 15-like 1	protein-coding	1.29469387712003	0.815411338309848	0.793732593286142	2.55373473852671	0.750979017074774	1.65839993518685	1.26499641487341	1.65869971399355	-0.664733147697578	0.627409321338025	0.980912176761026
Merged-chr11-68446130-3	chr11	68446052	68446252	+	936.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177320, intron 1 of 18)	URR1B|DNA|hAT-Charlie	14027.0	NM_177320	320207.0	Mm.244960	NM_177320	ENSMUSG00000020901	Pik3r5	AV230647|F730038I15Rik|Foap2|p101	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101505878-2	chr7	101505778	101505978	+	558.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001008548, intron 19 of 30)	intron (NM_001008548, intron 19 of 30)	30502.0	NR_029791	387157.0		NR_029791	ENSMUSG00000065446	Mir139	Mirn139|mir-139|mmu-mir-139	microRNA 139	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-126996556-4	chr6	126996450	126996650	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18992.0	NM_010204	14177.0	Mm.3403	NM_010204	ENSMUSG00000000183	Fgf6	Fgf-6|HSTF-2	fibroblast growth factor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117826448-2	chr11	117826348	117826548	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009387)	promoter-TSS (NM_009387)	-434.0	NM_009387	21877.0	Mm.2661	NM_009387	ENSMUSG00000025574	Tk1	D530002A18Rik|Tk-1|Tk1a|Tk1b	thymidine kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35815595-2	chr17	35815495	35815695	+	896.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-6118.0	NM_133662	15937.0	Mm.25613	NM_133662	ENSMUSG00000003541	Ier3	AI663993|IEX-1|cI-3|gly96	immediate early response 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64235843-2	chr5	64235743	64235943	+	923.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 1 of 18)	intron (NM_001289514, intron 1 of 18)	5486.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-75936820-3	chr2	75936727	75936927	+	859.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_028235, exon 1 of 1)	exon (NM_028235, exon 1 of 1)	1635.0	NM_028235	72421.0	Mm.275109	NM_028235	ENSMUSG00000075273	Ttc30b	2510042P03Rik|Tcc30b	tetratricopeptide repeat domain 30B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125294183-4	chr6	125294072	125294272	+	990.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC1|LINE|L1	-8091.0	NM_009446	22144.0	Mm.270295	NM_009446	ENSMUSG00000067702	Tuba3a	AI528779|M[a]3|Tuba3	tubulin, alpha 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-79048894-4	chr2	79048798	79048998	+	962.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	179220.0	NR_151457	22193.0	Mm.1485	NM_009454	ENSMUSG00000027011	Ube2e3	Ubce4|ubcM2	ubiquitin-conjugating enzyme E2E 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153424764-3	chr2	153424667	153424867	+	666.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001986, intron 2 of 7)	intron (NM_001001986, intron 2 of 7)	19712.0	NM_001001986	329540.0	Mm.50600	NM_001001986	ENSMUSG00000061411	Nol4l	4931410H15|8430427H17Rik|AI429157|Gm1636	nucleolar protein 4-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-14207854-1	chr2	14207754	14207954	+	579.0	f1_balb.idr	intron (NM_001081310, intron 3 of 3)	intron (NM_001081310, intron 3 of 3)	-21560.0	NM_008625	17533.0	Mm.2019	NM_008625	ENSMUSG00000026712	Mrc1	AW259686|CD206|MR	mannose receptor, C type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-35889541-2	chr4	35889441	35889641	+	573.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166000, intron 8 of 8)	intron (NM_001166000, intron 8 of 8)	-44337.0	NM_175516	242384.0	Mm.132507	NM_175516	ENSMUSG00000045083	Lingo2	B230217C06Rik|Lern3|Lrrn6c	leucine rich repeat and Ig domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-69594222-1	chr18	69594122	69594322	+	640.5	f0_balb.idr	intron (NM_001361128, intron 8 of 19)	intron (NM_001361128, intron 8 of 19)	248062.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83161872-2	chr6	83161772	83161972	+	882.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_027948, exon 4 of 4)	exon (NM_027948, exon 4 of 4)	-4052.0	NM_001198866	13191.0	Mm.6919	NM_007835	ENSMUSG00000031865	Dctn1	AL022633|DAP-150|DP-150|Glued|p150|p150-glued|p150<glued>	dynactin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-181520407-4	chr2	181520308	181520508	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016775)	promoter-TSS (NM_016775)	-77.0	NM_016775	13002.0	Mm.140761	NM_016775	ENSMUSG00000000826	Dnajc5	2610314I24Rik|AU018536|Csp	DnaJ heat shock protein family (Hsp40) member C5	protein-coding	5.70576790098971	5.03556580422252	5.28518608304971	5.15609853116514	5.18960881182814	4.93345753970872	5.25560410447254	5.24103861742939	-0.193068264422334	0.520048805953506	0.947641799425091
Merged-chr12-87267334-2	chr12	87267234	87267434	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146036, intron 1 of 8)	intron (NM_146036, intron 1 of 8)	606.0	NM_146036	217737.0	Mm.22626	NM_146036	ENSMUSG00000021037	Ahsa1	BC023857|p38	AHA1, activator of heat shock protein ATPase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35751813-1	chr17	35751713	35751913	+	583.0	f1_c57bl6.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-20637.0	NR_045459	74601.0	Mm.410840	NR_045459	ENSMUSG00000092171	4833427F10Rik	-	RIKEN cDNA 4833427F10 gene	ncRNA	3.92486450243387	2.9968792284506	3.10370519472065	2.55541433859837	3.05051264536805	3.72524351096402	3.02670186758774	1.55264528723347	-0.342064973232203	0.649673817031281	0.985422869512088
Merged-chr2-180726923-4	chr2	180726844	180727044	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183161, intron 1 of 12)	intron (NM_183161, intron 1 of 12)	1605.0	NM_183161	228993.0	Mm.87189	NM_183161	ENSMUSG00000023393	Slc17a9	1700019H03Rik|BC019537|Vnut	solute carrier family 17, member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-48432659-3	chr9	48432548	48432748	+	848.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21696.0	NR_026561	667933.0	Mm.491076	NR_026561		Gm8884	EG667933	predicted gene 8884	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-121376616-4	chr10	121376515	121376715	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029364, intron 4 of 13)	intron (NM_029364, intron 4 of 13)	11525.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	2.42287331338182	2.09015052969482	2.84218097532511	3.34568123922089	2.19814912262137	2.46339608286289	3.04591897190841	2.86915839634524	-0.164381067665023	0.828585288556443	0.998431161219273
Merged-chr5-130256978-4	chr5	130256893	130257093	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001015876)	promoter-TSS (NM_001015876)	-44.0	NR_153350	100929.0	Mm.271296	NM_178897	ENSMUSG00000056310	Tyw1	AW125391|Rsafd1	tRNA-yW synthesizing protein 1 homolog (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-41074035-4	chr13	41073928	41074128	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145802, intron 1 of 11)	intron (NM_001145802, intron 1 of 11)	-3563.0	NM_008547	17152.0	Mm.8149	NM_008547	ENSMUSG00000021363	Mak	A930010O05Rik	male germ cell-associated kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-47438174-4	chr4	47438049	47438249	+	836.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36218.0	NM_001355496	56737.0	Mm.22218	NM_019998	ENSMUSG00000039740	Alg2	1110018A23Rik|1300013N08Rik|ALPG2|CDGIi|MNCb-5081	asparagine-linked glycosylation 2 (alpha-1,3-mannosyltransferase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-74913758-4	chr14	74913688	74913888	+	956.828552	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033439, intron 1 of 19)	intron (NM_001033439, intron 1 of 19)	34089.0	NM_001252132	380916.0	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-39644660-4	chr5	39644505	39644705	+	852.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010474)	promoter-TSS (NM_010474)	26.0	NM_010474	15476.0	Mm.12559	NM_010474	ENSMUSG00000051022	Hs3st1	3-Ost|D5Wsu110e|Hsg3ost	heparan sulfate (glucosamine) 3-O-sulfotransferase 1	protein-coding	-1.58994551673671	-1.55912852307891	-1.56844783632235	-1.57610299769523	-1.18549093183599	-1.55710898902261	-1.56633814807757	-1.57473272746952	1.78703309985663	0.610309988231842	1
Merged-chr3-9666554-2	chr3	9666454	9666654	+	928.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56469.0	NM_133218	170753.0	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-118814154-4	chr2	118814051	118814251	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026412, exon 1 of 9)	exon (NM_026412, exon 1 of 9)	148.0	NM_026412	51944.0	Mm.252695	NM_026412	ENSMUSG00000027331	Knstrn	1700025D04Rik|C15orf23|D2Ertd750e|SKAP|Traf4af1	kinetochore-localized astrin/SPAG5 binding	protein-coding	2.83264772676128	1.45702255861135	3.33136698388531	2.0298722979728	2.21790410835585	2.94917137528695	2.53739722078122	2.19682808292441	-0.222702845998529	0.798724579110332	0.998431161219273
Merged-chr12-86740229-4	chr12	86740137	86740337	+	966.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195767, intron 3 of 14)	B3A|SINE|B2	5868.0	NM_001195767	627607.0	Mm.341880	NM_001195767	ENSMUSG00000059114	Lrrc74a	EG627607|Gm6772|Lrrc74	leucine rich repeat containing 74A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-35039341-2	chr7	35039241	35039441	+	627.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008820, intron 12 of 14)	intron (NM_008820, intron 12 of 14)	17225.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-4778251-2	chr8	4778200	4778400	+	651.016663	f1_balb.idr|f1_c57bl6.idr	intron (NM_011369, intron 1 of 12)	intron (NM_011369, intron 1 of 12)	1267.0	NM_011369	20419.0	Mm.37801	NM_011369	ENSMUSG00000022322	Shcbp1	mPAL	Shc SH2-domain binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-154335097-2	chr3	154334997	154335197	+	720.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_040387)	TTS (NR_040387)	4276.0	NR_040387	99686.0	Mm.38082	NR_040387	ENSMUSG00000093738	AI606473	-	expressed sequence AI606473	ncRNA	-1.03224044282356	-0.528348676481903	-1.02497085245391	-1.02881515129378	-0.758703265733638	-1.01077896320256	-1.02233033167315	-1.02845414759798	-0.909622492857339	0.776854299466003	1
Merged-chr13-58453227-4	chr13	58453105	58453305	+	978.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49862.0	NM_001301341	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-32281698-3	chr18	32281594	32281794	+	759.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	41363.0	NM_133658	13872.0	Mm.282335	NM_133658	ENSMUSG00000024382	Ercc3	BTF2 p89|Ercc-3|XPB	excision repair cross-complementing rodent repair deficiency, complementation group 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75657858-2	chr11	75657758	75657958	+	804.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_008659, exon 3 of 32)	exon (NM_008659, exon 3 of 32)	1843.0	NM_001080775	17913.0	Mm.234502	NM_008659	ENSMUSG00000017774	Myo1c	C80397|MMIb|MYO1E|NMI|mm1beta|myr2	myosin IC	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-95818835-2	chr11	95818735	95818935	+	588.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-5665.0	NM_153104	237928.0	Mm.133075	NM_153104	ENSMUSG00000050860	Phospho1	D11Moh36|Phospo1	phosphatase, orphan 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-160144176-3	chr2	160144074	160144274	+	704.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	127521.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-88572087-3	chr5	88572015	88572215	+	737.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289774, intron 1 of 17)	intron (NM_001289774, intron 1 of 17)	7075.0	NM_001289775	52822.0	Mm.270469	NM_027530	ENSMUSG00000029291	Rufy3	2810428M05Rik|6330416M07Rik|AW455998|AW538594|D5Bwg0860e|Ripx|Rpipx	RUN and FYVE domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-75007593-1	chr18	75007493	75007693	+	1000.0	f1_balb.idr	intron (NM_001358306, intron 1 of 2)	intron (NM_001358306, intron 1 of 2)	1754.0	NM_001001181	407819.0	Mm.29866	NM_001001181	ENSMUSG00000036299	BC031181	-	cDNA sequence BC031181	protein-coding	0.425112144769398	0.374596205073264	-0.109113807587584	-0.112746427095313	-0.117870115562685	-0.103332133895491	-0.108074284099428	0.306120684061072	-1.35924535337477	0.564065444312226	1
Merged-chr13-104286051-4	chr13	104285925	104286125	+	941.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1810.0	NR_136938	108154.0	Mm.208125	NM_175496	ENSMUSG00000046169	Adamts6	A930019D11Rik|ADAM-TS6|b2b1879.1Clo|b2b2029Clo|b2b2182Clo|b2b2187.1Clo|b2b2228Clo	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-111373589-4	chr7	111373498	111373698	+	996.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-250923.0	NR_015573	75479.0	Mm.381620	NR_015573	ENSMUSG00000110424	1700012D14Rik	-	RIKEN cDNA 1700012D14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-87656977-2	chr16	87656877	87657077	+	653.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41977.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	-0.16254041855125	-0.14825638717076	-0.152942882863562	0.366546539804585	0.105164234962169	-0.147199030521765	-0.151909827859754	0.469115510789665	0.769822771559305	0.744906788570447	1
Merged-chr2-160152329-4	chr2	160152209	160152409	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	135656.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171827302-2	chr1	171827202	171827402	+	726.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12395.0	NM_001252472	12523.0	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-16855975-2	chr16	16855875	16856075	+	611.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD-int|LTR|ERVL-MaLR	8010.0	NM_001190325	16136.0	Mm.184441	NM_001190325	ENSMUSG00000075370	Igll1	BB139905|Igl-5|Igll|Lambda5	immunoglobulin lambda-like polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-90463665-4	chr6	90463572	90463772	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355668, intron 1 of 2)	CpG	1096.0	NM_023184	66277.0	Mm.38343	NM_023184	ENSMUSG00000030087	Klf15	1810013I09Rik|AV048136|AW494632|CKLF|KKLF	Kruppel-like factor 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-37301983-3	chr9	37301890	37302090	+	644.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081429, intron 12 of 15)	intron (NM_001081429, intron 12 of 15)	-46252.0	NM_001145960	56857.0	Mm.440037	NM_020258	ENSMUSG00000032122	Slc37a2	G3PP|Slc37a1|cI-2|ci2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-132598987-2	chr7	132598887	132599087	+	654.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009123, intron 1 of 1)	intron (NM_009123, intron 1 of 1)	650.0	NM_009123	20231.0	Mm.334281	NM_009123	ENSMUSG00000048528	Nkx1-2	Nkx-1.1|Nkx-1.2|Sax1	NK1 homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-58909927-4	chr4	58909840	58910040	+	913.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355697, intron 1 of 49)	L1MB3|LINE|L1	1990.0	NM_001355697	230249.0	Mm.234801	NM_172381	ENSMUSG00000050812	AI314180	AW558785|BB181316|Ecpas|mKIAA0368	expressed sequence AI314180	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100431307-4	chr7	100431170	100431370	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001017985, intron 22 of 32)	intron (NM_001017985, intron 22 of 32)	-41721.0	NM_009464	22229.0	Mm.6254	NM_009464	ENSMUSG00000032942	Ucp3	AI645527|Slc25a9|UCP-3	uncoupling protein 3 (mitochondrial, proton carrier)	protein-coding	6.0554787285277	6.51562080226206	6.37990451250249	6.11819440604718	5.05045556868088	5.14773455013399	4.59922435387002	4.45767958538895	-1.61535660951787	4.34362545912654e-09	5.83374831252988e-07
Merged-chr9-70323479-1	chr9	70323379	70323579	+	606.5	f0_balb.idr	intron (NM_181072, intron 7 of 27)	intron (NM_181072, intron 7 of 27)	82274.0	NR_049200	100885839.0		NR_049200	ENSMUSG00000093763	Mir5626	Gm25590|mir-5626|mmu-mir-5626	microRNA 5626	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-68431430-2	chr11	68431330	68431530	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177320)	promoter-TSS (NM_177320)	-695.0	NM_177320	320207.0	Mm.244960	NM_177320	ENSMUSG00000020901	Pik3r5	AV230647|F730038I15Rik|Foap2|p101	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-95252131-2	chr11	95252031	95252231	+	830.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9398.0	NM_053093	93670.0	Mm.40085	NM_053093	ENSMUSG00000020872	Tac4	AW489379|PPT-C	tachykinin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16401130-6	chr7	16401035	16401235	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198631)	promoter-TSS (NM_198631)	-61.0	NM_198631	330474.0	Mm.333594	NM_198631	ENSMUSG00000059273	Zc3h4	Bwq1|Gm768|Kiaa1064-hp|mKIAA1064	zinc finger CCCH-type containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-78239914-2	chr16	78239814	78240014	+	951.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15540.0	NR_045698	100503619.0	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-78604128-1	chr17	78604028	78604228	+	730.0	f0_balb.idr	intron (NM_001197028, intron 8 of 12)	intron (NM_001197028, intron 8 of 12)	96065.0	NM_028813	74199.0	Mm.292983	NM_028813	ENSMUSG00000024076	Vit	1700052E02Rik|1700110E08Rik|2810429K11Rik|AKH|akhirin	vitrin	protein-coding	0.488878857512972	0.883343587853398	0.540934650474205	0.343270638567206	0.334139153871825	0.893606919525356	0.351509143578311	1.20282452163975	0.977150813680233	0.578878964972388	1
Merged-chr6-50944026-3	chr6	50943947	50944147	+	891.955566	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER5A|DNA|hAT-Charlie	167932.0	NR_045984	319981.0	Mm.131454	NR_045984	ENSMUSG00000107667	C530044C16Rik	-	RIKEN cDNA C530044C16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123148199-2	chr5	123148099	123148299	+	627.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001040398, exon 6 of 17)	exon (NM_001040398, exon 6 of 17)	6006.0	NM_001040398	208043.0	Mm.250391	NM_177581	ENSMUSG00000038384	Setd1b	AA516740|BC035291|KMT2G|mKIAA1076	SET domain containing 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-54942945-2	chr6	54942845	54943045	+	614.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001171007, intron 4 of 11)	intron (NM_001171007, intron 4 of 11)	28716.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-158768607-4	chr2	158768496	158768696	+	811.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027975, intron 1 of 3)	CpG	497.0	NM_027975	71878.0	Mm.85162	NM_027975	ENSMUSG00000027654	Fam83d	2310007D09Rik|BB104611	family with sequence similarity 83, member D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-21295133-2	chr5	21295033	21295233	+	562.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029195, intron 17 of 18)	MTD|LTR|ERVL-MaLR	-77540.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-53579013-4	chr17	53578894	53579094	+	650.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151733, intron 1 of 16)	intron (NR_151733, intron 1 of 16)	-5132.0	NM_001190846	18519.0	Mm.255025	NM_020005	ENSMUSG00000000708	Kat2b	A930006P13Rik|AI461839|AW536563|Pcaf|p/CAF	K(lysine) acetyltransferase 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-82876576-4	chr3	82876472	82876672	+	819.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001277170)	promoter-TSS (NM_001277170)	-89.0	NM_001146328	633285.0	Mm.265114	NM_001146328	ENSMUSG00000033882	Rbm46	EG633285|Gm761	RNA binding motif protein 46	protein-coding	1.45131724038695	0.951151346374223	1.41247647727187	0.900771665886255	0.867420257979111	2.11535757603586	2.33802739740803	2.7363609667092	2.8066293479614	0.0248212677969307	0.208255644075227
Merged-chr19-10218713-2	chr19	10218613	10218813	+	999.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033481, intron 11 of 25)	intron (NM_001033481, intron 11 of 25)	12680.0	NM_001163431	69038.0	Mm.375100	NM_026919	ENSMUSG00000036372	Tmem258	1810006K21Rik	transmembrane protein 258	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-8775254-2	chr19	8775154	8775354	+	783.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028418)	promoter-TSS (NR_028418)	769.0	NR_015538	100039957.0	Mm.220886	NR_015538		Gm2518	D630022E15Rik	interferon induced transmembrane protein 2 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-181395391-2	chr1	181395291	181395491	+	787.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001160212, intron 1 of 4)	ORR1F|LTR|ERVL-MaLR	42763.0	NM_001160211	72978.0	Mm.338083	NM_028408	ENSMUSG00000026514	Cnih3	2900075G08Rik|CNIH-3	cornichon family AMPA receptor auxiliary protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6310285-2	chr19	6310185	6310385	+	588.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_001033342, exon 5 of 37)	exon (NM_001033342, exon 5 of 37)	3828.0	NM_001033342	240505.0	Mm.329622	NM_001033342	ENSMUSG00000024769	Cdc42bpg	BC046418|MRCKgamma	CDC42 binding protein kinase gamma (DMPK-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-68258550-2	chr15	68258450	68258650	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_152182, intron 1 of 13)	CpG	306.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-55399169-2	chr12	55399069	55399269	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011968, intron 1 of 6)	CpG	344.0	NM_011968	26443.0	Mm.30210	NM_011968	ENSMUSG00000021024	Psma6	IOTA	proteasome (prosome, macropain) subunit, alpha type 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-17983370-4	chr13	17983267	17983467	+	984.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9984.0	NM_025904	67008.0	Mm.252918	NM_025904	ENSMUSG00000075054	Yae1d1	1600012F09Rik	Yae1 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55886114-4	chr14	55886020	55886220	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027143, intron 2 of 7)	intron (NM_027143, intron 2 of 7)	1178.0	NR_138134	219094.0	Mm.37592	NM_027143	ENSMUSG00000047153	Khnyn	6330555F21|9130227C08Rik|AI605259|Kiaa0323|mKIAA0323	KH and NYN domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-60501365-7	chr18	60501294	60501494	+	940.552368	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_134133, exon 1 of 2)	5' UTR (NM_134133, exon 1 of 2)	589.0	NM_134133	106878.0	Mm.273197	NM_134133	ENSMUSG00000038059	Smim3	2010002N04Rik|AI195350|AW561905|Nid67|cI-41	small integral membrane protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-36832010-3	chr8	36831852	36832052	+	676.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001194940, intron 4 of 17)	intron (NM_001194940, intron 4 of 17)	-98898.0	NM_001194941	50768.0	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	1.67535632867231	3.13102978251224	2.88777846905676	0.884959001006952	0.837018008757437	2.70338013909151	0.925442743260363	0.890622585081584	-1.60378546067998	0.519310969083694	0.947641799425091
Merged-chr1-180302910-4	chr1	180302798	180302998	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27578.0	NM_001081175	320404.0	Mm.132535	NM_001081175	ENSMUSG00000038855	Itpkb	1110033J02Rik|E130307H12Rik	inositol 1,4,5-trisphosphate 3-kinase B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-46442169-4	chr2	46442090	46442290	+	907.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	745585.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-82152175-4	chr15	82152080	82152280	+	788.895813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033218, intron 1 of 18)	intron (NM_033218, intron 1 of 18)	4911.0	NM_033218	20788.0	Mm.38016	NM_033218	ENSMUSG00000022463	Srebf2	AI608257|SREBP-2|SREBP2|SREBP2gc|bHLHd2|lop13|nuc	sterol regulatory element binding factor 2	protein-coding	0.21645143009689	1.48792340099666	0.238174508389645	0.435385111883202	1.00864324006794	0.250748349690634	0.463567360803312	0.231527628824113	-0.906965062437098	0.625396184079443	1
Merged-chr8-25537904-4	chr8	25537801	25538001	+	984.5750119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001079909, intron 2 of 16)	intron (NM_001079909, intron 2 of 16)	18182.0	NR_110510	102633315.0	Mm.437828	NR_110510	ENSMUSG00000086134	Gm16159	-	predicted gene 16159	ncRNA	2.44416014466331	2.74626396718299	1.38413752946756	2.89753043787268	2.03299470927836	2.76671363773603	1.86760418646301	2.38663190375437	-0.390900991515195	0.663750074293861	0.991657818949578
Merged-chr9-66067659-4	chr9	66067464	66067664	+	795.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011149)	TTS (NM_011149)	2167.0	NM_001025612	382083.0	Mm.477103	NM_001025612	ENSMUSG00000039452	Snx22	Gm1120	sorting nexin 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-12356126-1	chr15	12356026	12356226	+	831.0	f0_balb.idr	TTS (NM_001081064)	TTS (NM_001081064)	34630.0	NM_025673	66629.0	Mm.157655	NM_025673	ENSMUSG00000022200	Golph3	4733401N08Rik|5730410D03Rik|AW413496	golgi phosphoprotein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44901484-3	chr7	44901411	44901611	+	891.3333130000001	f1_balb.idr|f1_c57bl6.idr	TTS (NM_027376)	TTS (NM_027376)	5432.0	NM_027376	70300.0	Mm.276298	NM_027376	ENSMUSG00000011658	Fuz	2600013E07Rik|b2b1273Clo	fuzzy planar cell polarity protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-105560008-5	chr5	105559980	105560180	+	951.5200199999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133897, intron 2 of 3)	intron (NM_133897, intron 2 of 3)	40609.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-51517606-3	chr1	51517557	51517757	+	765.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151621, intron 3 of 3)	intron (NR_151621, intron 3 of 3)	-39258.0	NM_001310549	109019.0	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-30633458-3	chr16	30633361	30633561	+	586.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	33738.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-72813103-2	chr11	72813003	72813203	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001045536, intron 1 of 54)	intron (NM_001045536, intron 1 of 54)	16877.0	NM_001045536	195018.0	Mm.272030	NM_001045536	ENSMUSG00000055670	Zzef1	8430405D05Rik|BC051585|C130099L13Rik|C85424|NSPA|mKIAA0399	zinc finger, ZZ-type with EF hand domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-91390430-3	chr17	91390328	91390528	+	669.311096	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	-297626.0	NM_020252	18189.0	Mm.478418	NM_020252	ENSMUSG00000024109	Nrxn1	1700062G21Rik|9330127H16Rik|A230068P09Rik|mKIAA0578	neurexin I	protein-coding	1.50437791747746	1.69471800317026	0.974002066207151	1.46344645476312	1.87607904995577	1.57003465931677	0.97755524204644	1.70608086207	0.497651271769345	0.687915513339386	0.996533206832645
Merged-chr2-155236930-1	chr2	155236830	155237030	+	1000.0	f1_c57bl6.idr	exon (NM_001291108, exon 1 of 4)	exon (NM_001291108, exon 1 of 4)	322.0	NM_001291108	67068.0	Mm.23693	NM_025947	ENSMUSG00000047459	Dynlrb1	2010012N15Rik|2010320M17Rik|9430076K19Rik|AV124457|DNLC2A|Dncl2a|km23-1	dynein light chain roadblock-type 1	protein-coding	3.07005719930038	4.15187858224373	4.28250984513116	3.79400696956713	2.88853271992136	3.98881290977865	3.63957512397596	3.35717999373959	-0.549028005729079	0.313385322693889	0.815052626345346
Merged-chr15-9072988-2	chr15	9072888	9073088	+	748.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001040395, intron 1 of 12)	intron (NM_001040395, intron 1 of 12)	1728.0	NM_001040395	68646.0	Mm.244226	NM_001040395	ENSMUSG00000022253	Nadk2	MNADK|Nadkd1	NAD kinase 2, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-72539467-3	chr8	72539356	72539556	+	748.455566	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027485, intron 1 of 2)	B3A|SINE|B2	8854.0	NM_027485	70625.0	Mm.235885	NM_027485	ENSMUSG00000045248	Med26	5730493L18Rik|AI414941|AW495270|Crsp7	mediator complex subunit 26	protein-coding	-1.06932346315282	-1.04545378193536	-0.220844647149311	-1.06494782147003	-1.06867040657128	-1.04264807175102	-1.05547001227371	-1.06448932552894	-3.08190232315036	0.346744811462451	1
Merged-chr4-44011924-2	chr4	44011824	44012024	+	940.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290470)	promoter-TSS (NM_001290470)	-719.0	NM_016760	12757.0	Mm.298875	NM_016760	ENSMUSG00000028478	Clta	AV026556|Lca	clathrin, light polypeptide (Lca)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-21245877-2	chr2	21245777	21245977	+	713.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	40153.0	NM_177588	208967.0	Mm.268841	NM_177588	ENSMUSG00000048550	Thnsl1	AW413632	threonine synthase-like 1 (bacterial)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-100585238-4	chr5	100585147	100585347	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1G|LTR|ERVL-MaLR	-13042.0	NM_139198	231507.0	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89845260-2	chr3	89845160	89845360	+	665.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172530, intron 2 of 5)	intron (NM_172530, intron 2 of 5)	13890.0	NM_172530	214547.0	Mm.225	NM_172530	ENSMUSG00000046280	She	9430022A14	src homology 2 domain-containing transforming protein E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135466082-4	chr5	135465982	135466182	+	974.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146001, intron 1 of 30)	intron (NM_146001, intron 1 of 30)	-71536.0	NM_148932	107939.0	Mm.28399	NM_148932	ENSMUSG00000053293	Pom121	2610027A18Rik|C80273|mKIAA0618	nuclear pore membrane protein 121	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-94173273-2	chr8	94173173	94173373	+	888.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_008630, intron 2 of 2)	intron (NM_008630, intron 2 of 2)	655.0	NM_008630	17750.0	Mm.147226	NM_008630	ENSMUSG00000031762	Mt2	AA409533|MT-II|Mt-2	metallothionein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-147408986-2	chr5	147408901	147409101	+	786.766663	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8512.0	NM_010229	14255.0	Mm.194	NM_010229	ENSMUSG00000042817	Flt3	B230315G04|CD135|Flk-2|Flk2|Flt-3|Ly72|wmfl	FMS-like tyrosine kinase 3	protein-coding	-0.161128716517695	-0.883036795930771	-0.890611598625965	-0.893061778427922	-0.744085630581921	-0.880233907459775	-0.889911326547133	-0.892633676848341	-2.19211081861067	0.468800837409772	1
Merged-chr16-94525284-2	chr16	94525184	94525384	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007834, intron 1 of 7)	B3A|SINE|B2	1345.0	NM_007834	13185.0	Mm.7472	NM_007834	ENSMUSG00000022898	Dscr3	AW538125|Dcra	DSCR3 arrestin fold containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-38381443-4	chr6	38381323	38381523	+	979.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153600)	promoter-TSS (NM_153600)	-101.0	NM_153600	264134.0	Mm.253446	NM_153600	ENSMUSG00000056832	Ttc26	9330141E21Rik|9430097H08Rik|Ift56|hop|hpy	tetratricopeptide repeat domain 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-73446140-3	chr14	73446044	73446244	+	977.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60855.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56325848-4	chr17	56325720	56325920	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357909)	promoter-TSS (NM_001357909)	-230.0	NM_172132	193796.0	Mm.45047	NM_172132	ENSMUSG00000024201	Kdm4b	4732474L06Rik|Jmjd2b	lysine (K)-specific demethylase 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-55129515-4	chr3	55129425	55129625	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001144987, intron 8 of 8)	MER73|LTR|ERVL	-7814.0	NM_001290138	320604.0	Mm.213909	NM_177203	ENSMUSG00000048655	Ccdc169	A730037C10Rik	coiled-coil domain containing 169	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-120537411-2	chr5	120537311	120537511	+	642.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145853, intron 27 of 27)	intron (NM_145853, intron 27 of 27)	26219.0	NM_001177594	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-19590106-2	chr15	19590006	19590206	+	668.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	404733.0	NR_155419	102639102.0	Mm.463245	NR_155419	ENSMUSG00000115803	Gm35496	-	predicted gene, 35496	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-32250453-4	chr4	32250347	32250547	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-166988.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-31090666-2	chr17	31090566	31090766	+	996.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009593, intron 2 of 14)	intron (NM_009593, intron 2 of 14)	32972.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-149893071-2	chr1	149892971	149893171	+	618.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008869, intron 5 of 17)	MTC|LTR|ERVL-MaLR	29368.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-19209923-4	chr10	19209832	19210032	+	916.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42694.0	NR_038022	100504265.0	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-39443320-4	chr10	39443238	39443438	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122892, intron 2 of 12)	MLT1B|LTR|ERVL-MaLR	73539.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-42146603-1	chr9	42146503	42146703	+	550.0	f1_c57bl6.idr	Intergenic	Intergenic	-22306.0	NM_011436	20660.0	Mm.121920	NM_011436	ENSMUSG00000049313	Sorl1	2900010L19Rik|AI596264|AW261561|LR11|SorLA|gp250|mSorLA	sortilin-related receptor, LDLR class A repeats-containing	protein-coding	0.96623607499166	0.710446580941371	1.30297682453906	1.45287649417465	0.973947881000848	0.712760392744624	1.31511194468712	1.02264791318484	-0.541339695095563	0.70520810537871	0.998431161219273
Merged-chr19-7269444-2	chr19	7269344	7269544	+	676.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001320554, intron 1 of 11)	intron (NM_001320554, intron 1 of 11)	1165.0	NM_001320554	104383.0	Mm.283859	NM_054048	ENSMUSG00000024968	Rcor2	1A13|AW122124|CoREST|Rcor|Rcor1	REST corepressor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101051981-4	chr7	101051836	101052036	+	909.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39883.0	NM_001302346	18442.0	Mm.3000	NM_008773	ENSMUSG00000032860	P2ry2	P2U1|P2Y2	purinergic receptor P2Y, G-protein coupled 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-129948609-4	chr3	129948517	129948717	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025779, intron 1 of 7)	intron (NM_025779, intron 1 of 7)	21589.0	NM_025779	66815.0	Mm.31056	NM_025779	ENSMUSG00000027994	Mcub	9030408N13Rik|Ccdc109b	mitochondrial calcium uniporter dominant negative beta subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-170973166-3	chr1	170973081	170973281	+	713.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077189, intron 1 of 7)	intron (NM_001077189, intron 1 of 7)	2890.0	NM_010187	14130.0	Mm.425062	NM_010187	ENSMUSG00000026656	Fcgr2b	AI528646|CD32|F630109E10Rik|Fc[g]RII|FcgRII|Fcgr2|Fcgr2a|Fcr-2|Fcr-3|Ly-17|Ly-m20|LyM-1|Lym-1|fcRII	Fc receptor, IgG, low affinity IIb	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-39542990-3	chr18	39542893	39543093	+	754.666626	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F1|LTR|ERVL-MaLR	-55748.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-4171889-3	chr18	4171783	4171983	+	830.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026092, intron 3 of 4)	intron (NM_026092, intron 3 of 4)	6051.0	NM_026092	67328.0	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-87000346-3	chr3	87000287	87000487	+	957.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1047.0	NM_007639	12479.0	Mm.1894	NM_007639	ENSMUSG00000028076	Cd1d1	AI747460|CD1.1|Cd1a|Cd1d|Ly-38	CD1d1 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-20735993-2	chr9	20735893	20736093	+	691.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357639, intron 1 of 5)	intron (NM_001357639, intron 1 of 5)	-7764.0	NM_173777	244723.0	Mm.293552	NM_173777	ENSMUSG00000032172	Olfm2	A030009A06Rik	olfactomedin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-23436544-4	chr18	23436445	23436645	+	889.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361217, intron 1 of 20)	intron (NM_001361217, intron 1 of 20)	21136.0	NM_001361217	13527.0	Mm.94371	NM_010087	ENSMUSG00000024302	Dtna	2210407P21Rik|DTN-A|Dtn|Gm19389|a-DB-1|adbn	dystrobrevin alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-119102445-4	chr9	119102365	119102565	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177117)	promoter-TSS (NM_177117)	-13.0	NM_177117	320256.0	Mm.110648	NM_177117	ENSMUSG00000038060	Dlec1	D630005C06Rik	deleted in lung and esophageal cancer 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-42753395-4	chr19	42753321	42753521	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029011)	promoter-TSS (NM_029011)	-646.0	NM_029011	74580.0	Mm.329858	NM_029011	ENSMUSG00000060224	Pyroxd2	3830409H07Rik|4833409A17Rik	pyridine nucleotide-disulphide oxidoreductase domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-106215394-4	chr7	106215289	106215489	+	892.05835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029000).2	promoter-TSS (NM_029000).2	-49.0	NM_029000	74558.0	Mm.458429	NM_029000	ENSMUSG00000045868	Gvin1	9130002C22Rik|9830104F22Rik|Iigs1|VLIG|VLIG-1	GTPase, very large interferon inducible 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-142533178-4	chr7	142533161	142533361	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011288, intron 1 of 4)	CpG	144.0	NM_011288	19935.0	Mm.12144	NM_011288	ENSMUSG00000037772	Mrpl23	L23mrp|Rpl23|Rpl23l	mitochondrial ribosomal protein L23	protein-coding	-0.66395613586854	-0.650132319796144	-0.654627851381934	-0.658118311139364	-0.663084242743729	-0.426405497967606	0.292494002979729	-0.657507135854676	3.59702950230202	0.184711078562206	1
Merged-chr6-91473591-4	chr6	91473499	91473699	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133928)	promoter-TSS (NM_133928)	-152.0	NM_028766	74122.0	Mm.38801	NM_028766	ENSMUSG00000030095	Tmem43	1200015A22Rik|LUMA	transmembrane protein 43	protein-coding	8.36056929867367	8.20207952957119	8.60976389723458	8.02205998337972	8.49537500781038	8.1388880803094	8.3850117119671	8.3687049194587	0.0414396754298027	0.764739737796326	0.998431161219273
Merged-chr19-51973338-2	chr19	51973238	51973438	+	929.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-290959.0	NM_008386	16333.0	Mm.46269	NM_008386	ENSMUSG00000035804	Ins1	Ins-1|Ins2-rs1	insulin I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-7681107-4	chr10	7681022	7681222	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033219)	promoter-TSS (NR_033219)	13.0	NM_001358649	18537.0	Mm.258431	NM_008786	ENSMUSG00000019795	Pcmt1	C79501|PIMT	protein-L-isoaspartate (D-aspartate) O-methyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-49734614-4	chr2	49734515	49734715	+	926.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008449, intron 15 of 25)	intron (NM_008449, intron 15 of 25)	-53071.0	NM_027990	71897.0	Mm.41381	NM_027990	ENSMUSG00000026765	Lypd6b	2310010M24Rik|AW049525	LY6/PLAUR domain containing 6B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-6440238-2	chr2	6440138	6440338	+	613.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_181399, intron 13 of 13)	intron (NM_181399, intron 13 of 13)	87502.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-106308374-4	chr9	106308282	106308482	+	972.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027354, intron 9 of 10)	intron (NM_027354, intron 9 of 10)	27321.0	NM_027354	70235.0	Mm.23054	NM_027354	ENSMUSG00000023345	Poc1a	2510040D07Rik|Wdr51a|cha	POC1 centriolar protein A	protein-coding	3.5096167231543	2.68645688906609	3.52725195753225	3.01067587876894	3.78757086727626	3.11737317837778	3.22175761328659	2.92013820092449	0.124650535134773	0.83723029358723	0.998431161219273
Merged-chr8-125487205-2	chr8	125487128	125487328	+	786.5	f0_balb.idr|f1_c57bl6.idr	intron (NM_001357372, intron 3 of 21)	intron (NM_001357372, intron 3 of 21)	5605.0	NM_001081337	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	0.320059599281994	0.20173957764409	0.196198953097045	0.596441637908643	0.185928378393774	0.679978878205803	0.513164640316742	0.602175128431979	1.21892861302565	0.519233797032807	1
Merged-chr16-36068568-4	chr16	36068481	36068681	+	970.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027342, intron 1 of 4)	intron (NM_027342, intron 1 of 4)	2934.0	NM_027342	70186.0	Mm.212991	NM_027342	ENSMUSG00000003955	Fam162a	2310056P07Rik|HGTD-P	family with sequence similarity 162, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-146154050-4	chr3	146153952	146154152	+	981.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005846, intron 1 of 13)	intron (NM_001005846, intron 1 of 13)	3878.0	NM_001005846	68279.0	Mm.116862	NM_026656	ENSMUSG00000011008	Mcoln2	3300002C04Rik|AI549968|C86638|TRPML2	mucolipin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-31704506-2	chr16	31704406	31704606	+	591.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357281, intron 1 of 22)	intron (NM_001357281, intron 1 of 22)	8958.0	NM_001357281	13383.0	Mm.382	NM_007862	ENSMUSG00000022770	Dlg1	B130052P05Rik|Dlgh1|E-dlg/SAP97|SAP-97|SAP97|mKIAA4187	discs large MAGUK scaffold protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-70797965-4	chr6	70797857	70798057	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5782.0	NM_009075	19895.0	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-108760744-4	chr12	108760638	108760838	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32573.0	NM_009537	22632.0	Mm.3868	NM_009537	ENSMUSG00000021264	Yy1	AW488674|NF-E1	YY1 transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-83709097-2	chr17	83708997	83709197	+	766.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_054082, intron 2 of 16)	B4|SINE|B4	2934.0	NM_001171052	116871.0	Mm.277668	NM_054082	ENSMUSG00000055817	Mta3	1110002J22Rik|mKIAA1266	metastasis associated 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-63886937-3	chr5	63886834	63887034	+	815.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029554, intron 2 of 3)	intron (NM_029554, intron 2 of 3)	74439.0	NM_029554	76261.0	Mm.38143	NM_029554	ENSMUSG00000060512	0610040J01Rik	AI662686	RIKEN cDNA 0610040J01 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-102877695-4	chr2	102877589	102877789	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039150, intron 1 of 13)	intron (NM_001039150, intron 1 of 13)	23976.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-98359293-2	chr7	98359193	98359393	+	855.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001168541, intron 2 of 3)	intron (NM_001168541, intron 2 of 3)	1995.0	NM_001168540	244152.0	Mm.25317	NM_001024619	ENSMUSG00000049580	Tsku	9530051K01Rik|E2ig4|Lrrc54|Tsk	tsukushi, small leucine rich proteoglycan	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-9953005-4	chr19	9952901	9953101	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27599.0	NR_073181	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	0.6342382911057	1.22253824798804	0.2325607859673	0.226236090987504	0.382199300169512	0.242510688356412	0.234360111852601	0.821339758032631	-1.15412752306254	0.544070261098042	1
Merged-chr6-30616838-4	chr6	30616752	30616952	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144537, intron 4 of 11)	intron (NM_144537, intron 4 of 11)	5842.0	NM_144537	74649.0	Mm.159276	NM_144537	ENSMUSG00000029788	Cpa5	4930430M09Rik	carboxypeptidase A5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-95894992-3	chr10	95894910	95895110	+	684.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45653.0	NM_001001932	216238.0	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-48325055-2	chr17	48324955	48325155	+	931.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177083, exon 6 of 6)	3' UTR (NM_177083, exon 6 of 6)	8893.0	NM_177083	320148.0	Mm.123455	NM_177083	ENSMUSG00000043740	B430306N03Rik	Treml6	RIKEN cDNA B430306N03 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-34066819-4	chr11	34066716	34066916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010696, intron 3 of 20)	ORR1F|LTR|ERVL-MaLR	19888.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-120582770-4	chr9	120582684	120582884	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5453.0	NR_073359	76100.0	Mm.48212	NR_073359	ENSMUSG00000052658	5830454E08Rik	-	RIKEN cDNA 5830454E08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-124612019-2	chr2	124611919	124612119	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291000, intron 1 of 18)	intron (NM_001291000, intron 1 of 18)	1723.0	NM_172537	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-61469046-4	chr11	61468939	61469139	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15047.0	NM_001291024	22671.0	Mm.89201	NM_009548	ENSMUSG00000010086	Rnf112	ZNF179|Zfp179|bfp|neurolastin	ring finger protein 112	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-31076694-2	chr3	31076594	31076794	+	551.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18364.0	NM_001039090	20482.0	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-78789774-2	chr18	78789674	78789874	+	618.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_053099, intron 4 of 5)	intron (NM_053099, intron 4 of 5)	-192824.0	NM_207651	27411.0	Mm.44158	NM_030683	ENSMUSG00000024552	Slc14a2	UT-A1|UT-A3	solute carrier family 14 (urea transporter), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-38087460-2	chr16	38087349	38087549	+	812.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033221, exon 1 of 1)	non-coding (NR_033221, exon 1 of 1)	-1552.0	NM_001347232	56637.0	Mm.394930	NM_019827	ENSMUSG00000022812	Gsk3b	7330414F15Rik|8430431H08Rik|C86142|GSK-3|GSK-3beta|GSK3	glycogen synthase kinase 3 beta	protein-coding	-0.0358991699465203	-0.014040002617179	0.613959571837491	1.01236768542726	0.133792323023242	-0.0124517129635013	-0.0195585584013556	-0.0256773805514565	-3.38037883950971	0.120767722339422	1
Merged-chr5-130146061-2	chr5	130145961	130146161	+	933.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172509, intron 1 of 3)	intron (NM_172509, intron 1 of 3)	1173.0	NM_172509	212919.0	Mm.55812	NM_172509	ENSMUSG00000034110	Kctd7	4932409E18|9430010P06Rik	potassium channel tetramerisation domain containing 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-78473559-1	chr16	78473459	78473659	+	731.0	f0_balb.idr	Intergenic	Lx8|LINE|L1	-86757.0	NR_040569	75818.0	Mm.410817	NR_040569		4930478L05Rik	-	RIKEN cDNA 4930478L05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135966351-2	chr4	135966251	135966451	+	726.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356493, intron 4 of 10)	intron (NM_001356493, intron 4 of 10)	2626.0	NM_001356493	74246.0	Mm.247946	NM_178389	ENSMUSG00000028671	Gale	2310002A12Rik|AI323962	galactose-4-epimerase, UDP	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-80491450-2	chr18	80491350	80491550	+	632.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21783.0	NM_026295	67655.0	Mm.312893	NM_026295	ENSMUSG00000033323	Ctdp1	4930563P03Rik|AW553592	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-60505810-3	chr3	60505720	60505920	+	744.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253711, intron 1 of 7)	intron (NM_001253711, intron 1 of 7)	4641.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-13386170-2	chr1	13386070	13386270	+	592.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12087.0	NM_008678	17978.0	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-11055889-2	chr18	11055789	11055989	+	843.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010258, intron 2 of 6)	intron (NM_010258, intron 2 of 6)	-3322.0	NR_105022	68434.0	Mm.57626	NR_105022	ENSMUSG00000097222	1010001N08Rik	Gata6as	RIKEN cDNA 1010001N08 gene	ncRNA	0.265892599247276	0.297093324533196	1.26735535520483	0.279184061840196	0.267889237576485	0.886058599541148	1.18899445502314	0.280565411514736	0.46155693268806	0.8138629067426	1
Merged-chr11-70874319-4	chr11	70874211	70874411	+	934.4833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291143, intron 2 of 18)	intron (NM_001291143, intron 2 of 18)	29550.0	NM_001291142	54189.0	Mm.7087	NM_019400	ENSMUSG00000020817	Rabep1	Rab5ep|rabaptin-5|rabaptin-5alpha	rabaptin, RAB GTPase binding effector protein 1	protein-coding	0.810742676492084	0.856414324129649	1.72297199806758	1.66695917117395	1.58454245393397	0.859679915656267	1.38705849524512	1.46610038580613	0.0197166623021189	0.988821242063608	0.998431161219273
Merged-chr4-105162339-2	chr4	105162239	105162439	+	545.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_080555, intron 1 of 5)	intron (NM_080555, intron 1 of 5)	4992.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-25503840-2	chr9	25503740	25503940	+	653.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 2 of 7)	intron (NM_026189, intron 2 of 7)	22243.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-148041593-2	chr4	148041493	148041693	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001161798, exon 2 of 12)	exon (NM_001161798, exon 2 of 12)	404.0	NM_001161798	17769.0	Mm.89959	NM_010840	ENSMUSG00000029009	Mthfr	AI323986	methylenetetrahydrofolate reductase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-173584051-2	chr2	173583951	173584151	+	599.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_027957, intron 13 of 14)	intron (NR_027957, intron 13 of 14)	-5710.0	NM_027303	70065.0	Mm.425115	NM_027303	ENSMUSG00000027517	Ankrd60	1700019A24Rik|1700030G11Rik	ankyrin repeat domain 60	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-104450924-3	chr2	104450806	104451006	+	961.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010434, intron 2 of 15)	L2a|LINE|L2	-21966.0	NR_035432	100316678.0		NR_035432	ENSMUSG00000084516	Mir1902	Mirn1902|mmu-mir-1902	microRNA 1902	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-79153133-4	chr3	79153054	79153254	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7279.0	NM_001099624	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-31095515-4	chr5	31095407	31095607	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347323, intron 1 of 8)	CpG	-1980.0	NM_011773	22784.0	Mm.1396	NM_011773	ENSMUSG00000029151	Slc30a3	Znt3	solute carrier family 30 (zinc transporter), member 3	protein-coding	5.30981301325488	4.80479943587823	5.29266842231023	5.06356356389307	5.46081612337265	4.98531928347461	6.21168597375862	5.0867549049218	0.451254947210405	0.178745903128678	0.649334648917287
Merged-chr19-32759394-2	chr19	32759294	32759494	+	772.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008960, intron 1 of 8)	intron (NM_008960, intron 1 of 8)	1817.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34044438-2	chr17	34044338	34044538	+	968.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_009926, intron 4 of 63)	MIRc|SINE|MIR	5300.0	NM_001317722	12815.0	Mm.20230	NM_009926	ENSMUSG00000024330	Col11a2	-	collagen, type XI, alpha 2	protein-coding	-0.332045175964528	-0.459802851860659	0.190438814293863	-0.466378671016986	-0.328185432482055	-0.266348437257342	-0.462700086541542	-0.465879498839049	-1.61751935360132	0.507656919140523	1
Merged-chr2-146948679-3	chr2	146948591	146948791	+	877.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033298, intron 9 of 13)	intron (NM_001033298, intron 9 of 13)	-64308.0	NM_001356403	24128.0	Mm.3065	NM_011917	ENSMUSG00000027433	Xrn2	-	5'-3' exoribonuclease 2	protein-coding	2.24158852676357	2.25330791754753	1.64378864745549	2.80683003275086	2.7548025390399	2.26980430666083	1.65488801347802	2.74517861437287	0.284704184544444	0.747484720623838	0.998431161219273
Merged-chr4-63277180-4	chr4	63277093	63277293	+	972.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025685, intron 18 of 60)	intron (NM_025685, intron 18 of 60)	20342.0	NR_030477	735262.0		NR_030477	ENSMUSG00000070102	Mir455	Mirn455|mir-455|mmu-mir-455	microRNA 455	ncRNA	3.01524031119169	2.79623753009104	3.39906898758057	2.83877559643653	2.61967666647991	2.68574778949942	3.1262330233124	2.04287298215544	-0.675973669972106	0.332572312562485	0.833345452772687
Merged-chr9-40350884-3	chr9	40350793	40350993	+	779.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357617, intron 2 of 20)	intron (NM_001357617, intron 2 of 20)	-4648.0	NM_001357619	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-38084354-2	chr7	38084248	38084448	+	926.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D11|SINE|Alu	23142.0	NM_007633	12447.0	Mm.16110	NM_007633	ENSMUSG00000002068	Ccne1	AW538188|CycE1	cyclin E1	protein-coding	2.25153634850544	1.65824592722721	1.32500392045908	3.35260593541618	2.65208702585636	2.11089501002915	2.03627023359827	3.2078875806979	0.343593261987566	0.717642511195204	0.998431161219273
Merged-chr10-7847270-4	chr10	7847164	7847364	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172785, intron 2 of 5)	intron (NM_172785, intron 2 of 5)	10883.0	NR_039563	100628581.0		NR_039563	ENSMUSG00000093060	Mir5104	mir-5104|mmu-mir-5104|mu-mir-5104	microRNA 5104	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-43864602-2	chr5	43864502	43864702	+	712.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4207.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5709185-2	chr17	5709085	5709285	+	723.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 3 of 8)	intron (NM_146073, intron 3 of 8)	-89472.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114724051-2	chr11	114723951	114724151	+	937.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3361.0	NM_001034878	432611.0	Mm.212764	NM_001034878	ENSMUSG00000034706	Dnaic2	C030015H18Rik|Dnai2|Gm728|b2b3405Clo	dynein, axonemal, intermediate chain 2	protein-coding	0.648004357278484	0.380470682486434	0.37181790348758	0.365088407471152	0.882005253297905	1.16821496667765	1.10820021423256	0.366267526257828	2.99281369126777	0.109109911205115	1
Merged-chr10-60001192-2	chr10	60001092	60001292	+	760.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025514, intron 1 of 3)	MIR|SINE|MIR	-1613.0	NM_026937	69090.0	Mm.155839	NM_026937	ENSMUSG00000044475	Ascc1	1810015P09Rik|AI550520|ASC1p50|CGI-18	activating signal cointegrator 1 complex subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-125583393-3	chr7	125583274	125583474	+	752.361084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-20055.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	1.95443164412319	2.36203403031844	2.76174533663754	2.06109482247705	2.11774301515247	2.65655088894115	3.49505355517843	2.59663997176219	1.01113343738415	0.2068088091955	0.694871318598434
Merged-chr3-116187872-2	chr3	116187772	116187972	+	864.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-58184.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-106554737-2	chr3	106554637	106554837	+	550.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286986, intron 2 of 8)	intron (NM_001286986, intron 2 of 8)	-6935.0	NM_133869	99712.0	Mm.429443	NM_133869	ENSMUSG00000040774	Cept1	9930118K05Rik|mCEPT1	choline/ethanolaminephosphotransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-49194900-3	chr13	49194892	49195092	+	923.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013610, exon 3 of 4)	exon (NM_013610, exon 3 of 4)	7445.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-83081693-7	chr17	83081572	83081772	+	974.040833	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3447.0	NR_045094	100503434.0	Mm.187281	NR_045094		Gm19689	-	predicted gene, 19689	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-99979718-4	chr12	99979603	99979803	+	974.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164426, intron 2 of 2)	Lx7|LINE|L1	15204.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-45520601-4	chr4	45520503	45520703	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033306, intron 1 of 5)	intron (NM_001033306, intron 1 of 5)	10225.0	NM_001033306	230126.0	Mm.251716	NM_001033306	ENSMUSG00000044813	Shb	BC028832	src homology 2 domain-containing transforming protein B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191334672-4	chr1	191334564	191334764	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025864, intron 2 of 7)	MTEa|LTR|ERVL-MaLR	8699.0	NM_025864	66950.0	Mm.236300	NM_025864	ENSMUSG00000026627	Tmem206	2310028N02Rik|AI118576	transmembrane protein 206	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126565827-3	chr7	126565727	126565927	+	735.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146200, intron 2 of 20)	intron (NM_146200, intron 2 of 20)	539.0	NM_146200	56347.0	Mm.22776	NM_146200	ENSMUSG00000030738	Eif3c	110kDa|3230401O13Rik|Eif3s8|NIPIL(A3)|NipilA3|Xs|Xsl	eukaryotic translation initiation factor 3, subunit C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-98764562-2	chr15	98764462	98764662	+	571.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1444.0	NM_007478	11842.0	Mm.221298	NM_007478	ENSMUSG00000051853	Arf3	5430400P17Rik|AI854770	ADP-ribosylation factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180841666-2	chr1	180841566	180841766	+	789.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9485.0	NM_145943	208768.0	Mm.272625	NM_145943	ENSMUSG00000038806	Sde2	-	SDE2 telomere maintenance homolog (S. pombe)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-105269223-2	chr4	105269123	105269323	+	820.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	111876.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-30960330-4	chr5	30960241	30960441	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016703)	promoter-TSS (NM_016703)	-14.0	NM_016703	50907.0	Mm.272414	NM_016703	ENSMUSG00000045302	Preb	C85705	prolactin regulatory element binding	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-126677819-2	chr2	126677719	126677919	+	619.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-1482.0	NM_001271470	14391.0	Mm.293266	NM_010249	ENSMUSG00000027361	Gabpb1	BABPB2|E4TF1|E4TF1-47|E4TF1-53|E4Tf1B|GABPB|GABPB-1|GABPB-2|GABPB1-1|GABPB1-2|NRF2B1|NRF2B2	GA repeat binding protein, beta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-81973834-4	chr11	81973731	81973931	+	987.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5435.0	NM_001034013	11418.0	Mm.234998	NM_007384	ENSMUSG00000020704	Asic2	ACIC2|Accn1|BNC1|BNaC1|BNaC1a|Mdeg	acid-sensing (proton-gated) ion channel 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55918844-4	chr14	55918751	55918951	+	805.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18619.0	NM_001082975	654795.0	Mm.486218	NM_001082975	ENSMUSG00000022223	Sdr39u1	2310014G06Rik	short chain dehydrogenase/reductase family 39U, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-55396270-2	chr12	55396170	55396370	+	591.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310583, intron 1 of 6)	intron (NM_001310583, intron 1 of 6)	-2555.0	NM_011968	26443.0	Mm.30210	NM_011968	ENSMUSG00000021024	Psma6	IOTA	proteasome (prosome, macropain) subunit, alpha type 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-46484196-3	chr17	46484163	46484363	+	868.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001162864, exon 2 of 15)	5' UTR (NM_001162864, exon 2 of 15)	3412.0	NM_001162864	106763.0	Mm.297613	NM_175351	ENSMUSG00000015599	Ttbk1	AU017937|AW048023|C330008L01Rik	tau tubulin kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-95844190-4	chr11	95844105	95844305	+	881.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023121, intron 2 of 3)	B3|SINE|B2	960.0	NM_001284397	14710.0	Mm.46299	NM_023121	ENSMUSG00000038811	Gngt2	AV096488	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83385674-4	chr11	83385563	83385763	+	856.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027915, intron 17 of 20)	intron (NM_027915, intron 17 of 20)	-23474.0	NM_001361566	276952.0	Mm.66275	NM_001013386	ENSMUSG00000020684	Rasl10b	B230331P10Rik|Gm729|VTS58635	RAS-like, family 10, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-36936044-4	chr16	36935918	36936118	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008225, intron 1 of 13)	intron (NM_008225, intron 1 of 13)	1035.0	NM_008225	15163.0	Mm.4091	NM_008225	ENSMUSG00000022831	Hcls1	AW213261|HS1	hematopoietic cell specific Lyn substrate 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119918567-2	chr11	119918467	119918667	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085498, intron 7 of 7)	intron (NM_001085498, intron 7 of 7)	4757.0	NM_001085498	208092.0	Mm.306673	NM_001085498	ENSMUSG00000025371	Chmp6	2400004G01Rik	charged multivesicular body protein 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-4436333-2	chr12	4436233	4436433	+	996.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010881, intron 1 of 22)	L1M2|LINE|L1	40849.0	NM_010881	17977.0	Mm.301039	NM_010881	ENSMUSG00000020647	Ncoa1	KAT13A|NCoA-1|NRC-1|SRC-1|SRC-a|SRC1|bHLHe74|mNRC-1	nuclear receptor coactivator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-97158116-4	chr3	97158070	97158270	+	864.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019800)	promoter-TSS (NM_019800)	-607.0	NM_019800	66659.0	Mm.101368	NM_019800	ENSMUSG00000028093	Acp6	5730559A09Rik|ACPL1|AU022842|mPACPL1	acid phosphatase 6, lysophosphatidic	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-109245857-2	chr2	109245757	109245957	+	549.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029790, intron 2 of 5)	Lx9|LINE|L1	32433.0	NM_029790	76894.0	Mm.330451	NM_029790	ENSMUSG00000057234	Mettl15	0610027B03Rik|AI303697|AW049952|Mett5d1	methyltransferase like 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-29238261-4	chr7	29238177	29238377	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001110201)	promoter-TSS (NM_001110201)	-46.0	NM_001110201	77254.0	Mm.36699	NM_029887	ENSMUSG00000030588	Yif1b	9430029K10Rik|Yip1b	Yip1 interacting factor homolog B (S. cerevisiae)	protein-coding	7.0031766175224	6.75445032945166	7.13946555261869	6.9360484518043	7.18956261062729	7.09371853002742	7.79598945462044	7.27234834087421	0.417832667082601	0.0247688651889934	0.20809013243939
Merged-chr10-59259323-2	chr10	59259223	59259423	+	809.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37401.0	NM_172939	268301.0	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120105496-2	chr8	120105396	120105596	+	661.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-4024.0	NM_133967	102193.0	Mm.240076	NM_133967	ENSMUSG00000031823	Zdhhc7	AL024087|Gramp2	zinc finger, DHHC domain containing 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100300480-2	chr11	100300380	100300580	+	680.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-19469.0	NM_011508	20918.0	Mm.13886	NM_011508	ENSMUSG00000035530	Eif1	Sui1-rs1	eukaryotic translation initiation factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-31403215-3	chr3	31403090	31403290	+	935.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-92871.0	NM_172861	241919.0	Mm.285366	NM_172861	ENSMUSG00000069072	Slc7a14	A930013N06|BC061928	solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34860701-2	chr17	34860601	34860801	+	677.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008198, intron 4 of 17)	intron (NM_008198, intron 4 of 17)	1813.0	NM_001142706	14962.0	Mm.653	NM_008198	ENSMUSG00000090231	Cfb	AI195813|AI255840|B|Bf|C2|Fb|H2-Bf	complement factor B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-149132527-4	chr6	149132435	149132635	+	962.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8978.0	NM_001252096	320204.0	Mm.274099	NM_177101	ENSMUSG00000039958	Etfbkmt	4833442J19Rik|AI256744|ETFB-KMT|Mettl20	electron transfer flavoprotein beta subunit lysine methyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-32339965-4	chr12	32339877	32340077	+	976.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-38812.0	NM_001162903	72123.0	Mm.341352	NM_028111	ENSMUSG00000090946	Ccdc71l	2010109K11Rik|AV375874	coiled-coil domain containing 71 like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166909127-2	chr2	166909027	166909227	+	662.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023565, intron 1 of 24)	B2_Mm2|SINE|B2	3031.0	NM_023565	110750.0	Mm.22417	NM_023565	ENSMUSG00000002718	Cse1l	2610100P18Rik|AA407533|Capts|Cas|Xpo2	chromosome segregation 1-like (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-94610975-2	chr11	94610875	94611075	+	753.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID2|SINE|ID	-9189.0	NM_153807	264895.0	Mm.386885	NM_153807	ENSMUSG00000076435	Acsf2	-	acyl-CoA synthetase family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-144244372-3	chr1	144244318	144244518	+	977.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_015811)	TTS (NM_015811)	4686.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-72226377-3	chr1	72226313	72226513	+	932.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	U2|snRNA|snRNA	-14099.0	NM_001357488	381269.0	Mm.422636	NM_001005423	ENSMUSG00000039395	Mreg	Gm974|Wdt2|dsu	melanoregulin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-99167878-2	chr10	99167778	99167978	+	560.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153333, intron 11 of 12)	B4|SINE|B4	59743.0	NM_015737	14426.0	Mm.314	NM_015737	ENSMUSG00000090035	Galnt4	AV011803	polypeptide N-acetylgalactosaminyltransferase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-84860878-2	chr18	84860778	84860978	+	848.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001348159, intron 1 of 5)	intron (NM_001348159, intron 1 of 5)	9540.0	NM_001348159	109672.0	Mm.31018	NM_025797	ENSMUSG00000024646	Cyb5a	0610009N12Rik|Cyb5	cytochrome b5 type A (microsomal)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125352094-4	chr6	125351995	125352195	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011609, intron 1 of 9)	intron (NM_011609, intron 1 of 9)	2372.0	NM_011609	21937.0	Mm.1258	NM_011609	ENSMUSG00000030341	Tnfrsf1a	CD120a|FPF|TNF-R|TNF-R-I|TNF-R1|TNF-R55|TNF-alphaR1|TNFAR|TNFR60|TNFRI|TNFRp55|TNFalpha-R1|Tnfr-2|Tnfr1|p55|p55-R	tumor necrosis factor receptor superfamily, member 1a	protein-coding	3.27119015445385	3.21174097284811	2.24579691721032	3.74895594882864	2.37049122994282	2.14389432214434	2.26419861856763	3.11460572668808	-1.24114909076308	0.0905986494468099	0.464837130114811
Merged-chr6-127240297-4	chr6	127240182	127240382	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	67685.0	NR_073373	232386.0	Mm.257367	NR_073373	ENSMUSG00000107153	Gm38404	D130058E03	predicted gene, 38404	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-73539872-2	chr7	73539772	73539972	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_037569)	TTS (NR_037569)	1874.0	NM_001081345	244059.0	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-110217863-4	chr8	110217749	110217949	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146215)	promoter-TSS (NM_146215)	-111.0	NM_146215	234728.0	Mm.275341	NM_146215	ENSMUSG00000046441	Cmtr2	AU022703|C730036L12Rik|Ftsjd1|MTr2	cap methyltransferase 2	protein-coding	6.07858053037738	5.73762803137882	5.87264208342469	5.64449135513194	6.05820102963283	5.95646194562425	5.93231326670963	6.06108793285423	0.173893922763016	0.454277149716123	0.919120493489568
Merged-chr15-5237611-2	chr15	5237511	5237711	+	775.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001136079, intron 2 of 2)	intron (NM_001136079, intron 2 of 2)	6576.0	NM_001136079	19219.0	Mm.18509	NM_008965	ENSMUSG00000039942	Ptger4	EP4|Ptgerep4	prostaglandin E receptor 4 (subtype EP4)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-38193458-1	chr18	38193358	38193558	+	737.0	f1_balb.idr	Intergenic	Intergenic	16304.0	NM_029357	75599.0	Mm.36560	NM_029357	ENSMUSG00000051375	Pcdh1	2010005A06Rik|AI585920	protocadherin 1	protein-coding	-1.52696403314699	-1.49523967873556	-1.5048333853602	-1.51271394162622	-1.52473704212565	-1.49316068248889	-1.50266158046844	-1.06847079017215	2.01069003169785	0.564432837776867	1
Merged-chr14-56886450-4	chr14	56886362	56886562	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029498)	promoter-TSS (NM_029498)	-141.0	NM_177627	76007.0	Mm.31417	NM_029498	ENSMUSG00000021945	Zmym2	5830413P05Rik|FIM|MYM|RAMP|SCLL|Zfp198|Znf198	zinc finger, MYM-type 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-106303112-1	chr9	106303012	106303212	+	722.0	f1_c57bl6.idr	intron (NM_027354, intron 7 of 10)	intron (NM_027354, intron 7 of 10)	22051.0	NM_027354	70235.0	Mm.23054	NM_027354	ENSMUSG00000023345	Poc1a	2510040D07Rik|Wdr51a|cha	POC1 centriolar protein A	protein-coding	1.99358205108302	1.90884061401875	1.56411904508193	1.796636366075	2.01002546098461	1.92264087180475	1.5745141278216	1.36485024400199	-0.240499466131876	0.813981587063293	0.998431161219273
Merged-chr16-30060001-2	chr16	30059901	30060101	+	911.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5356.0	NM_008235	15205.0	Mm.390859	NM_008235	ENSMUSG00000022528	Hes1	Hry|bHLHb39	hes family bHLH transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-57400937-3	chr18	57400822	57401022	+	662.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4493.0	NR_152223	100503007.0	Mm.238087	NR_152223		Gm19500	-	predicted gene, 19500	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-8885138-2	chr13	8885038	8885238	+	851.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145360)	promoter-TSS (NM_145360)	-468.0	NM_145360	319554.0	Mm.29847	NM_145360	ENSMUSG00000058258	Idi1	4832416K17Rik|IPPI1	isopentenyl-diphosphate delta isomerase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71630060-4	chr8	71629959	71630159	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_106035)	TTS (NR_106035)	1047.0	NR_106035	102466799.0		NR_106035	ENSMUSG00000098976	Mir6769b	Gm27546|mmu-mir-6769b	microRNA 6769b	ncRNA	3.32984585269107	4.57770770171782	2.51711236630512	3.66933284434703	3.82033202065474	4.60767677041202	3.72877660935131	3.15743730914383	0.285828220903659	0.631772537817949	0.982230082053879
Merged-chr1-34849861-8	chr1	34849792	34849992	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175421)	promoter-TSS (NM_175421)	-67.0	NM_145516	226971.0	Mm.292751	NM_145516	ENSMUSG00000026123	Plekhb2	2310009M15Rik|AU018239|Evt2|Phdc|evt-2	pleckstrin homology domain containing, family B (evectins) member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-107087575-4	chr3	107087469	107087669	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-13998.0	NM_008417	16490.0	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-73533661-4	chr7	73533589	73533789	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081345, intron 2 of 38)	intron (NM_001081345, intron 2 of 38)	8057.0	NM_001081345	244059.0	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-34232028-4	chr5	34231930	34232130	+	897.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001015039, intron 6 of 12)	intron (NM_001015039, intron 6 of 12)	-44320.0	NM_010753	17122.0	Mm.259260	NM_010753	ENSMUSG00000037235	Mxd4	2810410A03Rik|Mad4|bHLHc12	Max dimerization protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-67996668-3	chr15	67996561	67996761	+	915.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	262195.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-8667978-4	chr3	8667855	8668055	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010423)	promoter-TSS (NM_010423)	-917.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69399053-2	chr11	69398953	69399153	+	721.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025915)	promoter-TSS (NM_025915)	-819.0	NM_025915	67020.0	Mm.390406	NM_025915	ENSMUSG00000045377	Tmem88	2600017H02Rik	transmembrane protein 88	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-82753193-4	chr6	82753041	82753241	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013820, intron 2 of 17)	intron (NM_013820, intron 2 of 17)	21313.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-25705796-4	chr5	25705683	25705883	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020570)	promoter-TSS (NM_020570)	14.0	NM_020570	57434.0	Mm.143767	NM_020570	ENSMUSG00000028933	Xrcc2	4921524O04Rik|8030409M04Rik|RAD51|RecA	X-ray repair complementing defective repair in Chinese hamster cells 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-154332102-4	chr3	154331983	154332183	+	890.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040387, intron 1 of 2)	intron (NR_040387, intron 1 of 2)	1262.0	NR_040387	99686.0	Mm.38082	NR_040387	ENSMUSG00000093738	AI606473	-	expressed sequence AI606473	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107296157-4	chr9	107296050	107296250	+	984.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009895)	promoter-TSS (NM_009895)	-509.0	NM_009895	12700.0	Mm.4592	NM_009895	ENSMUSG00000032578	Cish	CIS-1|CIS1|Cis|F17|F23|SOCS	cytokine inducible SH2-containing protein	protein-coding	3.03431767523725	3.39957476662976	3.66278142638587	3.74174799633601	2.87804423081825	2.85801434180742	2.89330901591914	3.29680908984961	-0.813345868594189	0.165885583425342	0.631187735036117
Merged-chr4-141213963-4	chr4	141213874	141214074	+	991.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081174)	promoter-TSS (NM_001081174)	18.0	NM_001081174	76166.0	Mm.271064	NM_001081174	ENSMUSG00000073733	Rsg1	6330545A04Rik|Gm723|b2b2804Clo|b2b2827Clo	REM2 and RAB-like small GTPase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-110994867-4	chr9	110994779	110994979	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152179, intron 2 of 6)	RMER17C2|LTR|ERVK	-5166.0	NM_153100	235636.0	Mm.441138	NM_153100	ENSMUSG00000066319	Rtp3	Tmem7	receptor transporter protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-13869297-4	chr17	13869267	13869467	+	886.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151731, intron 22 of 33)	MTA_Mm|LTR|ERVL-MaLR	-79006.0	NM_001122977	635895.0	Mm.388844	NM_001122977	ENSMUSG00000067941	Gm7168	EG635895	predicted gene 7168	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-5715234-2	chr2	5715134	5715334	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177343)	promoter-TSS (NM_177343)	-472.0	NM_177343	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-3988510-2	chr10	3988410	3988610	+	568.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001170785, intron 6 of 27)	MTC|LTR|ERVL-MaLR	15435.0	NM_172308	270685.0	Mm.184752	NM_172308	ENSMUSG00000040675	Mthfd1l	2410004L15Rik|AI647056|Fthfsdc1	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101483929-2	chr15	101483829	101484029	+	735.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016879, intron 6 of 9)	intron (NM_016879, intron 6 of 9)	7374.0	NM_016879	53622.0	Mm.347934	NM_016879		Krt85	AA589597|BB007925|Hb5|Krt2-18	keratin 85	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-74367272-2	chr1	74367172	74367372	+	739.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033345, intron 7 of 9)	PB1D7|SINE|Alu	5164.0	NM_001033345	241112.0	Mm.310460	NM_001033345	ENSMUSG00000073650	Catip	Gm216	ciliogenesis associated TTC17 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-120268707-4	chr14	120268596	120268796	+	944.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6973.0	NM_207515	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-23979701-4	chr17	23979601	23979801	+	999.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4471.0	NM_013921	30943.0	Mm.142568	NM_013921	ENSMUSG00000024124	Prss30	2010015P21Rik|Disp|Disp1|Tmprss8	protease, serine 30	protein-coding	4.0191149577613	3.73619314800143	3.89808073052403	4.07334694366769	3.10467472039423	3.67836285267108	3.64101736351406	3.0550118687307	-0.814502394558463	0.104019905661684	0.502812729289763
Merged-chr14-25484252-4	chr14	25484148	25484348	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	25063.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-46360067-3	chr18	46359961	46360161	+	844.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48133.0	NM_001160399	240261.0	Mm.329416	NM_001160399	ENSMUSG00000071855	Ccdc112	8430438M01Rik|AW108467	coiled-coil domain containing 112	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-5764412-3	chr18	5764312	5764512	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360982, intron 5 of 7)	intron (NM_001360982, intron 5 of 7)	171765.0	NM_001360981	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	2.26537981595555	3.00593784813238	1.47736136212085	3.32154369278627	2.28493085070674	2.42210332222774	2.83113541878511	3.07887405084549	-0.0259737763311462	0.975118388180029	0.998431161219273
Merged-chr14-75198305-2	chr14	75198205	75198405	+	992.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008879, intron 3 of 16)	URR1B|DNA|hAT-Charlie	-43982.0	NM_019775	56373.0	Mm.24242	NM_019775	ENSMUSG00000021999	Cpb2	1110032P04Rik|4930405E17Rik|AI255929|CPR|Cpu|TAFI	carboxypeptidase B2 (plasma)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-139195159-2	chr4	139195018	139195218	+	732.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	1007.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	1.24178522314146	0.937110949246375	1.99291780724224	2.24797506409476	0.876776748760797	1.40825368472113	1.16243465402515	1.94004949825813	-0.921860630069758	0.468933976244795	0.924737467231384
Merged-chr3-105056936-2	chr3	105056836	105057036	+	665.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	-3790.0	NM_030249	80281.0	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-145230821-2	chr5	145230715	145230915	+	676.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001083958)	promoter-TSS (NM_001083958)	-900.0	NM_001083958	72611.0	Mm.206555	NM_028298	ENSMUSG00000007812	Zfp655	2700038I16Rik|9030409O18Rik|mKIAA4222	zinc finger protein 655	protein-coding	0.354502833143799	0.373814130711177	0.536150240191341	0.769656898994137	0.816977901874605	0.854562040185486	0.540988036996599	0.657484371735672	1.34385152357694	0.426819404819544	1
Merged-chr7-100855994-4	chr7	100855898	100856098	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177073, intron 1 of 10)	intron (NM_177073, intron 1 of 10)	7415.0	NM_001358914	320100.0	Mm.40336	NM_177073	ENSMUSG00000008318	Relt	E430021K24Rik|Tnfrsf19l	RELT tumor necrosis factor receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36914689-4	chr1	36914573	36914773	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018872, intron 1 of 40)	intron (NM_018872, intron 1 of 40)	24854.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-8170265-2	chr17	8170165	8170365	+	602.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_201230, intron 5 of 11)	intron (NM_201230, intron 5 of 11)	4747.0	NM_201230	75296.0	Mm.227250	NM_201230	ENSMUSG00000069135	Fgfr1op	4930553O10Rik|FOP	Fgfr1 oncogene partner	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-103300742-2	chr12	103300642	103300842	+	708.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14027.0	NR_136894	102632488.0	Mm.109435	NR_136894	ENSMUSG00000100789	Gm29508	-	predicted gene 29508	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-57633636-2	chr9	57633536	57633736	+	766.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007783, intron 1 of 12)	intron (NM_007783, intron 1 of 12)	12017.0	NM_007783	12988.0	Mm.21974	NM_007783	ENSMUSG00000032312	Csk	AW212630|p50CSK	c-src tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-59132077-2	chr3	59131977	59132177	+	610.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001287123)	promoter-TSS (NM_001287123)	385.0	NM_001287120	140795.0	Mm.439021	NM_133200	ENSMUSG00000036381	P2ry14	A330108O13Rik|Gpr105|P2Y14	purinergic receptor P2Y, G-protein coupled, 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117338839-4	chr8	117338719	117338919	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	-10351.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30421322-1	chr7	30421222	30421422	+	1000.0	f0_c57.idr	promoter-TSS (NM_001360906)	promoter-TSS (NM_001360906)	-409.0	NM_001360906	243910.0	Mm.386878	NM_172142	ENSMUSG00000036931	Nfkbid	I-kappa-B-delta|IkappaBNS|ikB-delta	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	protein-coding	4.18079553742415	3.76108890180167	4.72819641808298	3.20201483210072	2.61836257593526	2.47905036320743	3.12030414463029	1.84462844674024	-2.32477883077606	0.000273553248133858	0.00687589079143162
Merged-chr3-37673970-4	chr3	37673870	37674070	+	906.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34023.0	NM_011896	24063.0	Mm.330986	NM_011896	ENSMUSG00000037211	Spry1	sprouty1|spry-1	sprouty RTK signaling antagonist 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-20695713-2	chr14	20695609	20695809	+	1000.0	f0_balb.idr|f0_c57.idr	TTS (NM_001168273)	TTS (NM_001168273)	741.0	NM_028428	73068.0	Mm.277552	NM_028428	ENSMUSG00000039357	Fut11	3110009G03Rik|AI317183	fucosyltransferase 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-52624856-4	chr12	52624756	52624956	+	994.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-22534.0	NR_045910	73278.0	Mm.396209	NR_045910	ENSMUSG00000100315	1700031P21Rik	-	RIKEN cDNA 1700031P21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-49971467-4	chr16	49971357	49971557	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9003.0	NR_045001	628951.0	Mm.428032	NR_045001		Gm6936	-	predicted gene 6936	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171210991-1	chr1	171210891	171211091	+	622.0	f0_balb.idr	Intergenic	Intergenic	-2979.0	NM_009803	12355.0	Mm.486506	NM_009803	ENSMUSG00000005677	Nr1i3	AA209988|AI551208|CAR|CAR-beta|Care2|ESTM32|MB67	nuclear receptor subfamily 1, group I, member 3	protein-coding	-0.899922854013325	-0.887109844254568	-0.894192548302204	-0.896351257249948	-0.524096507499593	-0.884464025606667	-0.437305640795677	-0.895974523573804	2.97790224550765	0.327267979253912	1
Merged-chr11-3150004-5	chr11	3149841	3150041	+	946.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030207, intron 14 of 32)	intron (NM_030207, intron 14 of 32)	25920.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-40937319-4	chr14	40937213	40937413	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145928, intron 1 of 8)	intron (NM_145928, intron 1 of 8)	10896.0	NM_001316748	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-6289947-2	chr11	6289847	6290047	+	657.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1650.0	NM_010956	18293.0	Mm.276348	NM_010956	ENSMUSG00000020456	Ogdh	2210403E04Rik|2210412K19Rik|AA409584|d1401|mKIAA4192	oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide)	protein-coding	1.5301632253895	1.07715015666904	2.05150816816368	2.60633826667305	1.54315852882135	1.08246348921794	2.06910383599618	1.62375029641393	-0.891909486764095	0.439158008225457	0.909130714404946
Merged-chr5-107359579-4	chr5	107359481	107359681	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_054054, exon 12 of 19)	exon (NM_054054, exon 12 of 19)	28387.0	NM_054054	114642.0	Mm.182836	NM_054054	ENSMUSG00000029279	Brdt	7420412D09Rik|Brd6|Fsrg3	bromodomain, testis-specific	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-42984150-3	chr15	42984150	42984350	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	186568.0	NM_001357957	239405.0	Mm.193274	NM_172815	ENSMUSG00000051920	Rspo2	2610028F08Rik|AA673245|D430027K22|ftls	R-spondin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-119975388-1	chr9	119975288	119975488	+	566.0	f1_balb.idr	intron (NM_001357562, intron 2 of 4)	B1_Mur2|SINE|Alu	7635.0	NM_001357560	215418.0	Mm.491094	NM_153287	ENSMUSG00000032515	Csrnp1	4931429D10Rik|Axud1|CSRNP-1|URAX1|taip-3	cysteine-serine-rich nuclear protein 1	protein-coding	-1.58994551673671	-1.55912852307891	-1.56844783632235	-1.57610299769523	-1.18549093183599	-1.55710898902261	-1.56633814807757	-1.57473272746952	1.78703309985663	0.610309988231842	1
Merged-chr15-73562318-2	chr15	73562218	73562418	+	902.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NR_152151, intron 16 of 23)	intron (NR_152151, intron 16 of 23)	34208.0	NM_001168255	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-58348866-4	chr1	58348744	58348944	+	819.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001008419, intron 28 of 35)	intron (NM_001008419, intron 28 of 35)	-44292.0	NM_025824	66882.0	Mm.21848	NM_025824	ENSMUSG00000051223	Bzw1	1200015E15Rik|mKIAA0005	basic leucine zipper and W2 domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-84840823-2	chr15	84840723	84840923	+	671.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356573, intron 2 of 12)	intron (NM_001356573, intron 2 of 12)	14276.0	NM_001356573	271305.0	Mm.101022	NM_001081166	ENSMUSG00000016624	Phf21b	A730032D07Rik	PHD finger protein 21B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-77972769-2	chr10	77972669	77972869	+	709.025024	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2897.0	NM_138301	28240.0	Mm.276762	NM_138301	ENSMUSG00000009292	Trpm2	9830168K16Rik|C79133|LTRPC2|TRPC7|Trp7|Trrp7	transient receptor potential cation channel, subfamily M, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-51982423-4	chr2	51982325	51982525	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9217.0	NM_001141948	64685.0	Mm.7491	NM_019401	ENSMUSG00000026946	Nmi	-	N-myc (and STAT) interactor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105861437-2	chr8	105861337	105861537	+	567.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357230, intron 1 of 4)	intron (NM_001357230, intron 1 of 4)	562.0	NM_001357230	68051.0	Mm.455474	NM_026532	ENSMUSG00000008450	Nutf2	2700067I02Rik|AI115459|AI413596|AW546000|Ntf2|Ntf3|PP15	nuclear transport factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-41228726-1	chr3	41228626	41228826	+	956.0	f0_balb.idr	Intergenic	Intergenic	-145680.0	NM_027558	70804.0	Mm.40321	NM_027558	ENSMUSG00000049940	Pgrmc2	4631434O19Rik|5730409G06Rik|DG6|PMBP	progesterone receptor membrane component 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-19937114-4	chr10	19937011	19937211	+	980.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008580, intron 1 of 29)	intron (NM_008580, intron 1 of 29)	2585.0	NM_008580	26408.0	Mm.6595	NM_008580	ENSMUSG00000071369	Map3k5	7420452D20Rik|ASK|ASK1|MAPKKK5|Mekk5	mitogen-activated protein kinase kinase kinase 5	protein-coding	3.99905202655444	3.88683651706136	3.18374886780868	3.08679737243082	4.57192248086971	4.13126105098818	4.29115250015585	3.81539700382637	0.877616961769367	0.0714293877160496	0.402730166267464
Merged-chr2-5025390-2	chr2	5025290	5025490	+	858.7999880000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356487, intron 12 of 13)	B2_Mm2|SINE|B2	-12599.0	NM_027290	70024.0	Mm.23828	NM_027290	ENSMUSG00000026669	Mcm10	2410041F14Rik|AU018508|C330019M07Rik|C79164	minichromosome maintenance 10 replication initiation factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-143626389-3	chr5	143626284	143626484	+	856.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011182, intron 1 of 12)	LTR33A_|LTR|ERVL	3937.0	NM_011182	19159.0	Mm.281003	NM_011182	ENSMUSG00000018001	Cyth3	AI648983|ARNO3|CLM3|Grp1|Pscd3	cytohesin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83082983-4	chr11	83082874	83083074	+	944.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	SRV_MM-int|LTR|ERVK	17862.0	NM_011408	20556.0	Mm.278689	NM_011408	ENSMUSG00000072620	Slfn2	Shlf2	schlafen 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-24599806-4	chr13	24599708	24599908	+	939.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_024599, intron 1 of 1)	intron (NR_024599, intron 1 of 1)	4959.0	NR_024599	76024.0	Mm.440710	NR_024599		Gm11346	5830431A10Rik|AI447617|Gm11347	X-linked lymphocyte-regulated 5 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-92459754-4	chr2	92459658	92459858	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_211358)	promoter-TSS (NM_211358)	36.0	NM_211358	228368.0	Mm.273990	NM_145832	ENSMUSG00000049922	Slc35c1	E430007K15Rik|fuct1	solute carrier family 35, member C1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-50896277-4	chr14	50896190	50896390	+	994.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3035.0	NM_001166651	546611.0	Mm.390692	NM_001166651	ENSMUSG00000090799	Klhl33	EG546611	kelch-like 33	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-78604590-2	chr17	78604490	78604690	+	617.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001197028, intron 8 of 12)	intron (NM_001197028, intron 8 of 12)	96527.0	NM_028813	74199.0	Mm.292983	NM_028813	ENSMUSG00000024076	Vit	1700052E02Rik|1700110E08Rik|2810429K11Rik|AKH|akhirin	vitrin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-73234712-2	chr8	73234612	73234812	+	788.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010687, intron 1 of 14)	B4A|SINE|B4	118828.0	NM_001317391	16795.0	Mm.324371	NM_010687	ENSMUSG00000004383	Large1	BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd	LARGE xylosyl- and glucuronyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-3118089-2	chr18	3117989	3118189	+	858.900024	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5323.0	NM_001167539	100312476.0	Mm.480293	NM_001167539	ENSMUSG00000091539	Vmn1r238	-	vomeronasal 1 receptor, 238	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-102028176-4	chr7	102028082	102028282	+	974.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029211, intron 6 of 8)	intron (NM_029211, intron 6 of 8)	-10027.0	NM_010531	16068.0	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-89745711-6	chr10	89745577	89745777	+	999.357178	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029166, intron 1 of 20)	CpG	686.0	NM_029166	75089.0	Mm.268922	NM_029166	ENSMUSG00000019951	Uhrf1bp1l	2010319N22Rik|4930506D01Rik|AA589495|C80672|E030041M21Rik|mKIAA0701	UHRF1 (ICBP90) binding protein 1-like	protein-coding	1.16396444745012	0.998559242079247	1.49139754101649	1.09941299215782	1.17369219457454	1.45214580720566	1.13838397790239	0.776014587016905	-0.195960636303826	0.882234771751594	0.998431161219273
Merged-chr1-75342968-2	chr1	75342868	75343068	+	729.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17324.0	NM_010043	13346.0	Mm.6712	NM_010043	ENSMUSG00000026208	Des	-	desmin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-79684241-4	chr1	79684152	79684352	+	996.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6B|LTR|ERVK	-12280.0	NM_183027	252903.0	Mm.32409	NM_183027	ENSMUSG00000054702	Ap1s3	1190009B22|Jr2|[s]3A	adaptor-related protein complex AP-1, sigma 3	protein-coding	-2.18292257394068	-2.15545247547656	-2.03304972317742	-2.17058342868585	-2.18099422382073	-2.1536522739386	-2.16187909550322	-2.16936197735154	-0.683654500252594	0.846597994014493	1
Merged-chr4-134710167-2	chr4	134710067	134710267	+	787.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5877.0	NM_207237	230815.0	Mm.18905	NM_207237	ENSMUSG00000037306	Man1c1	AI593348	mannosidase, alpha, class 1C, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-49833714-2	chr18	49833614	49833814	+	798.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081371, intron 1 of 42)	intron (NM_001081371, intron 1 of 42)	717.0	NM_001081371	240283.0	Mm.257790	NM_001081371	ENSMUSG00000037416	Dmxl1	C630007L23Rik|D030030C22	Dmx-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-39576026-5	chr1	39575936	39576136	+	905.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033135, intron 1 of 6)	intron (NM_001033135, intron 1 of 6)	1311.0	NM_001033135	67702.0	Mm.28614	NM_001033135	ENSMUSG00000048234	Rnf149	1600023E10Rik|AV037261|C76763|Gm15832|Greul4	ring finger protein 149	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-98803177-2	chr15	98803077	98803277	+	598.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001013741)	TTS (NM_001013741)	4748.0	NM_001013741	13199.0	Mm.390810	NM_001013741	ENSMUSG00000059213	Ddn	Gm748	dendrin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-17882757-2	chr12	17882657	17882857	+	860.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	191948.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64354900-3	chr5	64354817	64355017	+	722.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	113025.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	1.30428407471275	0.649992037422201	0.987746092046812	0.957966197678556	1.03297744970529	0.652226832752083	1.45983982248272	0.812639431107501	0.154031854821424	0.916994332358738	0.998431161219273
Merged-chr11-20728321-1	chr11	20728221	20728421	+	677.0	f1_balb.idr	intron (NM_181411, intron 1 of 8)	B1_Mus1|SINE|Alu	13235.0	NM_001290545	216549.0	Mm.356580	NM_181411	ENSMUSG00000049659	Aftph	-	aftiphilin	protein-coding	-2.18375600819439	-2.15556918946382	-2.16409311609999	-2.17109492323169	-2.18177734563694	-2.01960173909294	-2.16216348594872	-2.16984160310277	0.759018020146679	0.829933115115583	1
Merged-chr11-116078418-3	chr11	116078266	116078466	+	817.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001009573)	promoter-TSS (NM_001009573)	-405.0	NM_001009573	70450.0	Mm.259460	NM_001009573	ENSMUSG00000057948	Unc13d	2610108D09Rik|Jinx|Munc13-4|mFLJ00067	unc-13 homolog D (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-3015327-4	chr9	3015242	3015442	+	940.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GSAT_MM|Satellite|Satellite	23401.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-75323326-2	chr10	75323226	75323426	+	867.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001331095, intron 1 of 2)	intron (NM_001331095, intron 1 of 2)	-1532.0	NM_001331096	11540.0	Mm.333734	NM_009630	ENSMUSG00000020178	Adora2a	A2AAR|A2aR|AA2AR	adenosine A2a receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-91243589-2	chr1	91243489	91243689	+	909.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6715.0	NM_001355763	67921.0	Mm.337238	NM_026454	ENSMUSG00000034343	Ube2f	2510010F15Rik|AI851109	ubiquitin-conjugating enzyme E2F (putative)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-113404691-2	chr7	113404591	113404791	+	743.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16118.0	NM_020623	19226.0	Mm.284168	NM_020623	ENSMUSG00000059077	Pth	Pthp	parathyroid hormone	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-78920641-1	chr3	78920541	78920741	+	618.0	f1_balb.idr	Intergenic	Intergenic	224246.0	NM_001310536	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	0.284434028881147	-0.155771914495089	-0.160221509989746	0.128368976386801	0.459288703267743	-0.154767126703378	-0.15924122544203	-0.163048083461164	-0.0397899400680314	0.986676485060463	1
Merged-chr2-118307811-4	chr2	118307712	118307912	+	999.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045919, intron 2 of 2)	intron (NR_045919, intron 2 of 2)	2898.0	NR_045919	73358.0	Mm.437192	NR_045919	ENSMUSG00000085889	1700054M17Rik	-	RIKEN cDNA 1700054M17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21168438-4	chr9	21168336	21168536	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183408, intron 1 of 14)	intron (NM_183408, intron 1 of 14)	2722.0	NM_183408	18577.0	Mm.191749	NM_019798	ENSMUSG00000032177	Pde4a	D9Ertd60e|Dpde2	phosphodiesterase 4A, cAMP specific	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-53285890-2	chr6	53285790	53285990	+	664.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1413.0	NM_001327821	231991.0	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127610771-4	chr10	127610661	127610861	+	986.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 2 of 88)	intron (NM_008512, intron 2 of 88)	10387.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	1.22603209497986	2.30578178355061	2.80303259740047	2.16177064665714	1.94315443055154	2.02198842070357	2.82526884022424	1.89476545083168	-0.0236935162971205	0.980415894240402	0.998431161219273
Merged-chr19-40513835-4	chr19	40513743	40513943	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009166)	promoter-TSS (NM_009166)	-31.0	NM_009166	20411.0	Mm.210815	NM_009166	ENSMUSG00000025006	Sorbs1	2310065E01Rik|9530001P15Rik|CAP|SH3P12|Sh3d5|mKIAA1296	sorbin and SH3 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-94556788-4	chr4	94556699	94556899	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026368)	promoter-TSS (NM_026368)	-3.0	NM_026368	67770.0	Mm.35170	NM_026368	ENSMUSG00000028578	Caap1	5830433M19Rik|AI536248|CAAP	caspase activity and apoptosis inhibitor 1	protein-coding	6.42528970000648	6.31117449101714	6.08514463765494	6.47861194150291	6.31876614189441	6.05307239001037	5.31854935897396	6.50350922568578	-0.232346043112372	0.36168591573281	0.857610200980682
Merged-chr8-71602499-2	chr8	71602427	71602627	+	703.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166213, intron 6 of 14)	CpG-14169	4881.0	NM_001166213	100037278.0	Mm.482159	NM_001166213	ENSMUSG00000043243	Fam129c	Bcnp1	family with sequence similarity 129, member C	protein-coding	1.05136532564433	1.220472534008	0.912198605526659	1.31615513991992	0.548705440171192	0.577514381802006	0.920522165728697	0.560207445858413	-2.9031565367825	0.0818254704679035	1
Merged-chr6-53288065-5	chr6	53287952	53288152	+	801.766663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001327821, intron 1 of 10)	CpG	749.0	NM_001327821	231991.0	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-36198493-2	chr17	36198393	36198593	+	892.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8342.0	NM_008208	15043.0	Mm.426002	NM_008208	ENSMUSG00000054128	H2-T3	H-2T3|H2-Tw3|MumuTL|TL	histocompatibility 2, T region locus 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-38659430-2	chr15	38659330	38659530	+	869.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28|LTR|ERVL	-2474.0	NM_025494	66335.0	Mm.276618	NM_025494	ENSMUSG00000022295	Atp6v1c1	1700025B18Rik|U13839	ATPase, H+ transporting, lysosomal V1 subunit C1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-85386728-3	chr10	85386609	85386809	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028709)	promoter-TSS (NM_028709)	-105.0	NM_028709	74007.0	Mm.36544	NM_028709	ENSMUSG00000020042	Btbd11	6330404E16Rik	BTB (POZ) domain containing 11	protein-coding	6.50434443814516	6.78685887098772	5.97228004456806	6.07087137091935	6.53287184180434	6.71044944680195	5.98862737008069	6.07745013850034	-0.0126981641151638	0.959148765682591	0.998431161219273
Merged-chr4-9837772-2	chr4	9837672	9837872	+	667.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6600.0	NM_013526	242316.0	Mm.302555	NM_013526	ENSMUSG00000051279	Gdf6	BMP-13|BMP13|GDF16	growth differentiation factor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-184020709-1	chr1	184020609	184020809	+	759.0	f0_balb.idr	Intergenic	Intergenic	13289.0	NM_028516	73363.0	Mm.50115	NM_028516	ENSMUSG00000044854	1700056E22Rik	-	RIKEN cDNA 1700056E22 gene	protein-coding	0.932382879566504	0.784240527470534	1.01455869850984	0.747138756331243	2.28123655976275	0.788792715792971	1.9065477135266	1.9271293524598	3.84417405555622	0.00959945080849374	0.105975470349
Merged-chr17-25792354-4	chr17	25792257	25792457	+	946.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285982)	promoter-TSS (NM_001285982)	30.0	NM_001285982	214917.0	Mm.26783	NM_145410	ENSMUSG00000057411	Fam173a	-	family with sequence similarity 173, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-33400634-2	chr6	33400534	33400734	+	542.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347089, intron 7 of 9)	L1MB7|LINE|L1	151506.0	NM_001347089	20336.0	Mm.265512	NM_009148	ENSMUSG00000029763	Exoc4	C78892|Sec8|Sec8l1	exocyst complex component 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-131976820-2	chr4	131976720	131976920	+	691.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183428, intron 9 of 20)	MIRc|SINE|MIR	55049.0	NM_001201367	623230.0	Mm.421179	NM_001201367	ENSMUSG00000070720	Tmem200b	EG623230	transmembrane protein 200B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-38613507-3	chr13	38613402	38613602	+	760.133362	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139063, intron 3 of 4)	intron (NM_139063, intron 3 of 4)	21607.0	NM_139063	17828.0	Mm.261554	NM_139063	ENSMUSG00000038982	Bloc1s5	1810074A19Rik|Muted|mu	biogenesis of lysosomal organelles complex-1, subunit 5, muted	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-182911017-2	chr1	182910917	182911117	+	602.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43771.0	NM_016928	53791.0	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-9722792-4	chr10	9722695	9722895	+	956.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38073.0	NR_038036	620417.0	Mm.378085	NR_038036	ENSMUSG00000111901	Gm6150	-	predicted gene 6150	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-84638653-4	chr2	84638555	84638755	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007615, intron 1 of 19)	intron (NM_007615, intron 1 of 19)	10825.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	2.64242078500116	2.84291407775667	3.9165952782238	3.29276968467501	3.89477689409173	2.86462470084002	3.32613677393073	3.22445990592651	0.191855520985817	0.758766565136382	0.998431161219273
Merged-chr18-60696857-2	chr18	60696757	60696957	+	896.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001348100, intron 10 of 14)	intron (NM_001348100, intron 10 of 14)	30709.0	NM_001348103	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	0.353617713618131	1.090942726664	0.212310041807847	0.206433986168988	0.613778488037002	0.221574511299951	0.834395273612173	0.207463011453148	-0.193700510650554	0.920177565130261	1
Merged-chr19-28612459-3	chr19	28612358	28612558	+	926.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175459, intron 2 of 10)	intron (NM_175459, intron 2 of 10)	-65766.0	NR_045330	320176.0	Mm.406716	NR_045330	ENSMUSG00000097735	D930032P07Rik	-	RIKEN cDNA D930032P07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-135467132-3	chr1	135467052	135467252	+	621.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173437, intron 9 of 28)	intron (NM_173437, intron 9 of 28)	-12469.0	NR_049188	100885827.0		NR_049188	ENSMUSG00000093515	Mir1231	Gm23720|mir-1231|mmu-mir-1231	microRNA 1231	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-32579013-2	chr11	32578913	32579113	+	657.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 4 of 18)	intron (NM_009288, intron 4 of 18)	45747.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-53704580-4	chr9	53704432	53704632	+	980.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175562, intron 1 of 1)	intron (NM_175562, intron 1 of 1)	1700.0	NM_175562	270160.0	Mm.290285	NM_175562	ENSMUSG00000055069	Rab39	C230094F14Rik|Rab39a	RAB39, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-125706928-1	chr7	125706828	125707028	+	541.0	f1_c57bl6.idr	promoter-TSS (NM_001081022)	promoter-TSS (NM_001081022)	760.0	NM_207239	233863.0	Mm.294173	NM_207239	ENSMUSG00000032777	Gtf3c1	-	general transcription factor III C 1	protein-coding	-2.18375600819439	-2.15556918946382	-2.16409311609999	-2.17109492323169	-2.18177734563694	-2.01960173909294	-2.16216348594872	-2.16984160310277	0.759018020146679	0.829933115115583	1
Merged-chr13-28824180-3	chr13	28824091	28824291	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045054, intron 2 of 7)	intron (NR_045054, intron 2 of 7)	61231.0	NR_045054	72518.0	Mm.37454	NR_045053		2610307P16Rik	AI666457	RIKEN cDNA 2610307P16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-54034617-4	chr6	54034490	54034690	+	639.512512	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5342.0	NM_001163640	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118678465-4	chr9	118678284	118678484	+	872.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 11 of 27)	intron (NM_133721, intron 11 of 27)	-33308.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-37319278-4	chr10	37319176	37319376	+	945.991699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-180350.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-79704414-4	chr10	79704339	79704539	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009768)	promoter-TSS (NM_009768)	81.0	NM_009768	12215.0	Mm.726	NM_009768	ENSMUSG00000023175	Bsg	AI115436|AI325119|CD147|EMMPRIN|HT-7	basigin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-148688761-2	chr4	148688665	148688865	+	797.5	f0_balb.idr|f1_balb.idr	Intergenic	B1F2|SINE|Alu	45448.0	NM_001085505	230909.0	Mm.332067	NM_001085505	ENSMUSG00000070577	Gm572	b2b1167Clo	predicted gene 572	protein-coding	1.23238986096169	1.45697175355354	2.82072665774878	1.33393217677543	4.07705247259528	3.7168420467558	4.19123589659038	3.78239910162194	3.65399556818357	0.00466251408488245	0.0635210189141783
Merged-chr8-94995679-3	chr8	94995586	94995786	+	896.7666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018882, intron 1 of 13)	intron (NM_018882, intron 1 of 13)	11287.0	NM_018882	14766.0	Mm.290834	NM_018882	ENSMUSG00000031785	Adgrg1	Cyt28|Gpr56|TM7LN4|TM7XN1	adhesion G protein-coupled receptor G1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-48338751-2	chr7	48338651	48338851	+	791.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49775.0	NM_207539	404240.0	Mm.357942	NM_207539	ENSMUSG00000050870	Mrgprb8	MrgB8	MAS-related GPR, member B8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-116626218-3	chr7	116626120	116626320	+	715.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	121851.0	NM_001360375	53322.0	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-79297294-4	chr12	79297214	79297414	+	993.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252562)	promoter-TSS (NM_001252562)	32.0	NM_009014	19363.0	Mm.341756	NM_009014	ENSMUSG00000059060	Rad51b	AI553500|R51H2|Rad51l1|mREC2	RAD51 paralog B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-8675067-2	chr8	8674967	8675167	+	611.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_176849, intron 3 of 3)	ORR1A2-int|LTR|ERVL-MaLR	-14294.0	NM_010111	13642.0	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-27445423-2	chr7	27445323	27445523	+	706.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_032610, intron 1 of 35)	B1_Mus2|SINE|Alu	1166.0	NM_032610	80297.0	Mm.459123	NM_032610	ENSMUSG00000011751	Sptbn4	1700022P15Rik|5830426A08Rik|ROSA62|SpbIV|Spnb4|dyn|lnd|nmf261|nmf379|qv	spectrin beta, non-erythrocytic 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-11518549-4	chr19	11518471	11518671	+	915.81665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027209)	promoter-TSS (NM_027209)	12.0	NM_027209	69774.0	Mm.436639	NM_027209	ENSMUSG00000024677	Ms4a6b	1810027D10Rik	membrane-spanning 4-domains, subfamily A, member 6B	protein-coding	3.31359619314639	1.72590196408949	1.94577307852236	3.64511474854951	3.78262446580755	4.4229557654241	4.4610825457229	3.66397727120428	1.77166585329068	0.00701002665785203	0.0851853138159102
Merged-chr2-167498870-2	chr2	167498770	167498970	+	745.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_030743, intron 1 of 7)	intron (NM_030743, intron 1 of 7)	-4573.0	NR_153838	81018.0	Mm.22225	NM_030743	ENSMUSG00000006418	Rnf114	1110008J21Rik|AI225886|AW549494|Zfp228|Zfp313|Znf228	ring finger protein 114	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-32766462-4	chr15	32766345	32766545	+	717.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155440, intron 1 of 1)	intron (NR_155440, intron 1 of 1)	6707.0	NR_155440	105245909.0	Mm.229263	NR_155440	ENSMUSG00000115749	Gm41289	-	predicted gene, 41289	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115560531-2	chr5	115560448	115560648	+	890.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_007475, intron 2 of 6)	intron (NM_007475, intron 2 of 6)	1081.0	NM_007475	11837.0	Mm.5286	NM_007475	ENSMUSG00000067274	Rplp0	36B4|Arbp|L10E	ribosomal protein, large, P0	protein-coding	3.28957430663581	3.59753842899071	3.40991498550285	2.7579859184689	2.93985037281025	2.95841704619032	3.08442467032144	2.99083946064558	-0.521587614694666	0.387313939411826	0.877010783839805
Merged-chr7-28386652-4	chr7	28386555	28386755	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_026042, exon 4 of 4)	3' UTR (NM_026042, exon 4 of 4)	6035.0	NM_026042	67224.0	Mm.41647	NM_026042	ENSMUSG00000003444	Med29	2810405O22Rik|AU020902|Ixl	mediator complex subunit 29	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-32455158-5	chr11	32455103	32455303	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361561)	promoter-TSS (NM_001361561)	-167.0	NM_001361561	327900.0	Mm.260956	NM_173784	ENSMUSG00000044949	Ubtd2	4930571L24|9630054F20Rik|AI645720	ubiquitin domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-59590790-2	chr14	59590690	59590890	+	550.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153387, intron 3 of 10)	B2_Mm2|SINE|B2	7169.0	NM_001168537	71891.0	Mm.439850	NM_027986	ENSMUSG00000021982	Cdadc1	2310010M10Rik|AI449174|AI463398|BB130816|NYD-SP15	cytidine and dCMP deaminase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-27664794-4	chr15	27664709	27664909	+	765.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001242423, exon 2 of 8)	exon (NM_001242423, exon 2 of 8)	16733.0	NM_001242424	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-43335712-3	chr16	43335614	43335814	+	886.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181058, intron 2 of 6)	intron (NM_181058, intron 2 of 6)	84482.0	NR_046026	626693.0	Mm.447083	NR_046026	ENSMUSG00000085499	Gm15713	-	predicted gene 15713	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-120154652-4	chr2	120154539	120154739	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133838)	promoter-TSS (NM_133838)	-64.0	NM_133838	98878.0	Mm.132226	NM_133838	ENSMUSG00000027293	Ehd4	2210022F10Rik|AI197390|AI846352|AV006278|Past2	EH-domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-187635607-1	chr1	187635507	187635707	+	651.0	f1_c57bl6.idr	intron (NM_001243792, intron 1 of 7)	B4|SINE|B4	-16151.0	NM_001357534	26381.0	Mm.89989	NM_011935	ENSMUSG00000026610	Esrrg	ERR3|Errg|NR3B3|mKIAA0832	estrogen-related receptor gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-34624574-3	chr18	34624452	34624652	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166406)	promoter-TSS (NM_001166406)	-72.0	NM_001166407	19348.0	Mm.258846	NM_009004	ENSMUSG00000003779	Kif20a	AA415432|Rab6kifl	kinesin family member 20A	protein-coding	3.73919561873572	2.83357419508032	3.10284670112499	2.5002791213227	3.06333148132209	3.61522934361286	4.32695167108116	2.79729346246391	0.70359686109737	0.277737306550979	0.781531777619553
Merged-chr5-135107341-2	chr5	135107241	135107441	+	651.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_152882, intron 1 of 16)	CpG	450.0	NR_152882	58805.0	Mm.34213	NM_021455	ENSMUSG00000005373	Mlxipl	ChREBP|Mlx|WS-bHLH|Wbscr14|bHLHd14	MLX interacting protein-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-25018485-2	chr8	25018385	25018585	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027194, intron 2 of 3)	intron (NM_027194, intron 2 of 3)	1274.0	NM_027194	69742.0	Mm.28626	NM_027194	ENSMUSG00000031556	Tm2d2	2410018G23Rik|Blp1	TM2 domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-123034812-1	chr8	123034712	123034912	+	555.0	f0_balb.idr	intron (NM_001081379, intron 1 of 12)	B3A|SINE|B2	7472.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-33424282-2	chr14	33424182	33424382	+	777.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310453, intron 1 of 11)	intron (NM_001310453, intron 1 of 11)	-13258.0	NM_001310452	26419.0	Mm.21495	NM_016700	ENSMUSG00000021936	Mapk8	AI849689|JNK|JNK1|Prkm8|SAPK1	mitogen-activated protein kinase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-32378962-4	chr12	32378935	32379135	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001162903, exon 1 of 1)	exon (NM_001162903, exon 1 of 1)	246.0	NM_001162903	72123.0	Mm.341352	NM_028111	ENSMUSG00000090946	Ccdc71l	2010109K11Rik|AV375874	coiled-coil domain containing 71 like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-114617511-2	chr5	114617411	114617611	+	560.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40910.0	NM_022017	63873.0	Mm.266450	NM_022017	ENSMUSG00000014158	Trpv4	0610033B08Rik|OTRPC4|Trp12|VR-OAC|VRL-2|VROAC	transient receptor potential cation channel, subfamily V, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-34727430-6	chr2	34727308	34727508	+	959.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151469, intron 4 of 26)	intron (NR_151469, intron 4 of 26)	27824.0	NM_001356441	66691.0	Mm.156452	NM_025709	ENSMUSG00000026867	Gapvd1	2010005B09Rik|4432404J10Rik|AW108497|Gapex-5|RAP6|RME-6|mKIAA1521	GTPase activating protein and VPS9 domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-14352280-2	chr14	14352180	14352380	+	565.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008369, intron 10 of 11)	intron (NM_008369, intron 10 of 11)	5785.0	NM_008369	16188.0	Mm.425857	NM_008369	ENSMUSG00000068758	Il3ra	CD123|CDw123|SUT-1	interleukin 3 receptor, alpha chain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-107353962-2	chr11	107353862	107354062	+	709.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 1 of 9)	URR1B|DNA|hAT-Charlie	116758.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53236750-2	chr4	53236650	53236850	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME4b|LINE|L1	-9446.0	NR_040665	78180.0	Mm.243847	NR_040665	ENSMUSG00000086947	4930522O17Rik	-	RIKEN cDNA 4930522O17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-88138292-4	chr8	88138191	88138391	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_106039)	promoter-TSS (NR_106039)	85.0	NR_106039	102465649.0		NR_106039	ENSMUSG00000099080	Mir7071	Gm27623|mmu-mir-7071	microRNA 7071	ncRNA	3.35123454570029	2.82027511537727	4.45396583504272	3.16351497737229	0.967707294683761	1.16262475373936	1.10461711153049	1.05131806269108	-6.77967764817832	1.64665441835461e-08	1.81808831700171e-06
Merged-chr10-108196655-2	chr10	108196555	108196755	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027892, intron 1 of 25)	B3|SINE|B2	34255.0	NM_027892	17931.0	Mm.422959	NM_027892	ENSMUSG00000019907	Ppp1r12a	1200015F06Rik|5730577I22Rik|AA792106|AV099298|D10Ertd625e|Mypt1	protein phosphatase 1, regulatory (inhibitor) subunit 12A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-71043526-4	chr2	71043398	71043598	+	975.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145524, intron 1 of 9)	MTD|LTR|ERVL-MaLR	12108.0	NM_145524	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-142071769-4	chr4	142071680	142071880	+	840.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145402, intron 1 of 2)	intron (NM_145402, intron 1 of 2)	-12518.0	NR_027137	100038693.0	Mm.402714	NR_027137	ENSMUSG00000073728	Tmem51os1	Gm10565|Tmem51as1	Tmem51 opposite strand 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-42472237-4	chr9	42472159	42472359	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173038)	promoter-TSS (NM_173038)	-1.0	NM_173038	272589.0	Mm.34483	NM_173038	ENSMUSG00000037287	Tbcel	D330014K23|E130107N23Rik|Lrrc35	tubulin folding cofactor E-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105345237-4	chr8	105345134	105345334	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177699, intron 1 of 21)	intron (NM_177699, intron 1 of 21)	2736.0	NM_177699	234686.0	Mm.87724	NM_177699	ENSMUSG00000014778	Fhod1	BC017144|FHOS|FHOS1	formin homology 2 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-77441768-4	chr11	77441644	77441844	+	976.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177710, intron 12 of 14)	intron (NM_177710, intron 12 of 14)	-22169.0	NM_139129	216961.0	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-45947968-3	chr1	45947864	45948064	+	711.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22370.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127104862-2	chr10	127104762	127104962	+	873.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177614, intron 5 of 13)	B1_Mus1|SINE|Alu	16298.0	NM_177614	216440.0	Mm.295246	NM_177614	ENSMUSG00000040462	Os9	4632413K17Rik|AU022351	amplified in osteosarcoma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-107347956-2	chr11	107347856	107348056	+	669.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 1 of 9)	B1_Mm|SINE|Alu	122764.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167779005-2	chr2	167778905	167779105	+	875.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	87828.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33583969-4	chr16	33583757	33583957	+	987.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083902, intron 4 of 11)	intron (NM_001083902, intron 4 of 11)	65262.0	NM_001083902	171286.0	Mm.35253	NM_134251	ENSMUSG00000035506	Slc12a8	CCC9|E330020C02Rik	solute carrier family 12 (potassium/chloride transporters), member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-61087859-2	chr18	61087759	61087959	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17713.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-8509875-4	chr12	8509776	8509976	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9867.0	NM_007483	11852.0	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	6.09007351326862	6.58418738876599	6.15216407228693	5.84091207586329	5.84291075516389	5.85122287285124	5.49033204490407	5.21624714179742	-0.623272514446345	0.016742661315606	0.15701806967012
Merged-chr14-55588163-2	chr14	55588063	55588263	+	579.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001029855, intron 8 of 10)	intron (NM_001029855, intron 8 of 10)	2858.0	NM_011190	19188.0	Mm.371573	NM_011190	ENSMUSG00000079197	Psme2	AA589371|AI788882|PA28b	proteasome (prosome, macropain) activator subunit 2 (PA28 beta)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-52435697-3	chr5	52435608	52435808	+	837.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001256059, exon 3 of 12)	exon (NM_001256059, exon 3 of 12)	-5451.0	NR_152197	100041805.0	Mm.417070	NR_152197		Gm3519	Gm43683	predicted gene 3519	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-74222536-4	chr4	74222428	74222628	+	828.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19969.0	NM_001172095	76804.0	Mm.209059	NM_144787	ENSMUSG00000028397	Kdm4c	2410141F18Rik|AA517467|Gasc1|Jmjd2c	lysine (K)-specific demethylase 4C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69416015-6	chr11	69415930	69416130	+	960.0912480000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2355.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-114459021-2	chr13	114458863	114459063	+	603.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_001301373)	promoter-TSS (NM_001301373)	-12.0	NM_008046	14313.0	Mm.4913	NM_008046	ENSMUSG00000021765	Fst	AL033346|FS	follistatin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-17675522-4	chr6	17675371	17675571	+	998.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18523.0	NM_001289626	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-86674383-1	chr17	86674283	86674483	+	756.0	f1_c57bl6.idr	Intergenic	Intergenic	-79481.0	NM_010137	13819.0	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	-0.605159523701947	-0.594116237171468	-0.597738223658067	0.0306133245632224	-0.604471279605959	-0.593299269534912	-0.596939695456833	-0.167618268272535	-0.704591710035489	0.805658358061801	1
Merged-chr2-13290824-2	chr2	13290724	13290924	+	798.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081084, intron 60 of 66)	intron (NM_001081084, intron 60 of 66)	-19409.0	NM_009105	20163.0	Mm.905	NM_009105	ENSMUSG00000026727	Rsu1	RsuI|rsp-1	Ras suppressor protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-79777260-3	chr10	79777175	79777375	+	858.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031380)	promoter-TSS (NM_031380)	1.0	NM_031380	83554.0	Mm.251710	NM_031380	ENSMUSG00000020325	Fstl3	E030038F23Rik|Flrg	follistatin-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-72689681-4	chr14	72689571	72689771	+	898.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207636, intron 1 of 25)	L1_Mur3|LINE|L1	20332.0	NM_207636	319448.0	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-21949541-4	chr6	21949440	21949640	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023626)	promoter-TSS (NM_023626)	-31.0	NM_001311061	71777.0	Mm.39999	NM_023626	ENSMUSG00000029670	Ing3	1300013A07Rik|P47ING3	inhibitor of growth family, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-86064327-4	chr1	86064241	86064441	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027357)	promoter-TSS (NM_027357)	-278.0	NM_027357	70247.0	Mm.280013	NM_027357	ENSMUSG00000026229	Psmd1	2410026J11Rik|P112|S1	proteasome (prosome, macropain) 26S subunit, non-ATPase, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-57811923-2	chr6	57811823	57812023	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146168, intron 1 of 4)	intron (NM_146168, intron 1 of 4)	13202.0	NM_146168	232023.0	Mm.24642	NM_146168	ENSMUSG00000037788	Vopp1	AW146242|Ecop	vesicular, overexpressed in cancer, prosurvival protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-89834643-3	chr13	89834544	89834744	+	980.7222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR31A_Mm|LTR|ERVK	-92132.0	NM_001134475	13003.0	Mm.158700	NM_019389	ENSMUSG00000021614	Vcan	5430420N07Rik|9430051N09|Cspg2|DPEAAE|NG2|PG-M|PG-M(V0)|PG-M(V1)|hdf	versican	protein-coding	3.67514644348021	4.56654840061868	3.51342561656506	3.91952035674988	1.14136137232806	1.36373820859472	1.29762412989205	1.81773597388059	-5.58354021426836	5.77425438196352e-07	4.10748047874298e-05
Merged-chr14-21812924-4	chr14	21812833	21813033	+	962.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18628.0	NM_011695	22334.0	Mm.262327	NM_011695	ENSMUSG00000021771	Vdac2	Vdac6|mVDAC2|mVDAC6	voltage-dependent anion channel 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134705901-4	chr6	134705794	134705994	+	966.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170479, intron 3 of 3)	intron (NM_001170479, intron 3 of 3)	64954.0	NM_026371	67774.0	Mm.41892	NM_026371	ENSMUSG00000042992	Borcs5	5830457J20Rik|AW124643|Loh12cr1	BLOC-1 related complex subunit 5	protein-coding	4.92373279983845	3.95620907051148	4.0392002033289	4.05290048295442	4.09707118436442	4.50314518768899	4.13461009454589	3.27472786117446	-0.336913374803905	0.47445645698322	0.926577946129404
Merged-chr6-113495190-2	chr6	113495090	113495290	+	707.833374	f1_balb.idr|f1_c57bl6.idr	exon (NM_172487, exon 4 of 4)	exon (NM_172487, exon 4 of 4)	6628.0	NM_172487	210673.0	Mm.133060	NM_172487	ENSMUSG00000045009	Prrt3	6330505P20|B230206N24Rik	proline-rich transmembrane protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-88549774-2	chr17	88549697	88549897	+	758.916626	f1_balb.idr|f1_c57bl6.idr	exon (NM_028658, exon 6 of 22)	exon (NM_028658, exon 6 of 22)	19673.0	NM_028658	73825.0	Mm.271817	NM_028658	ENSMUSG00000034709	Ppp1r21	1110018J12Rik|AI426045|AW550781|Ccdc128|Klraq1	protein phosphatase 1, regulatory subunit 21	protein-coding	1.50480462357498	0.70754776756163	0.694663156924966	1.60584635989567	1.66806310489626	0.710425943853348	0.697521584712194	1.1929453264677	-0.239675476696792	0.880247655358109	0.998431161219273
Merged-chr14-31376937-2	chr14	31376837	31377037	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347585, intron 6 of 7)	intron (NM_001347585, intron 6 of 7)	40299.0	NM_009796	12339.0	Mm.201535	NM_009796	ENSMUSG00000021893	Capn7	AU022319|PalBH	calpain 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-32138863-4	chr19	32138766	32138966	+	951.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 7 of 9)	intron (NM_144792, intron 7 of 9)	-35726.0	NM_018830	54447.0	Mm.491229	NM_018830	ENSMUSG00000024887	Asah2	AI585898	N-acylsphingosine amidohydrolase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124661363-4	chr6	124661255	124661455	+	783.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-1749.0	NR_149320	14792.0	Mm.273915	NM_145130	ENSMUSG00000004270	Lpcat3	C3f|Grcc3f|Lpcat|Lpeat|Lplat5|Lpsat|Mboat5|Moact5|Oact5|PTG	lysophosphatidylcholine acyltransferase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-97772317-4	chr4	97772205	97772405	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122952, intron 1 of 10)	CpG	-5321.0	NM_001122953	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-7571370-4	chr9	7571277	7571477	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310717)	promoter-TSS (NM_001310717)	-19.0	NM_001310717	234911.0	Mm.334940	NM_001030289	ENSMUSG00000070323	Mmp27	Gm180	matrix metallopeptidase 27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-17637788-2	chr6	17637688	17637888	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007604, intron 1 of 9)	intron (NM_007604, intron 1 of 9)	778.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-85499359-3	chr8	85499241	85499441	+	878.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173866, intron 2 of 11)	B3A|SINE|B2	6724.0	NM_173866	108682.0	Mm.200423	NM_173866	ENSMUSG00000031700	Gpt2	4631422C05Rik|ALT2|AU014768|AU041193|C87201	glutamic pyruvate transaminase (alanine aminotransferase) 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111170246-2	chr12	111170146	111170346	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286122, intron 1 of 9)	intron (NM_001286122, intron 1 of 9)	3876.0	NM_011632	22031.0	Mm.27431	NM_011632	ENSMUSG00000021277	Traf3	AI528849|CAP-1|CD40bp|CRAF1|LAP1|T-BAM|amn	TNF receptor-associated factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-85344975-1	chr1	85344875	85345075	+	860.0	f1_balb.idr	Intergenic	Intergenic	-74409.0	NM_001037909	620078.0	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik	RIKEN cDNA C130026I21 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-59120684-4	chr3	59120584	59120784	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001287119, intron 1 of 2)	MER20|DNA|hAT-Charlie	10078.0	NM_001287124	140795.0	Mm.439021	NM_133200	ENSMUSG00000036381	P2ry14	A330108O13Rik|Gpr105|P2Y14	purinergic receptor P2Y, G-protein coupled, 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81058238-2	chr10	81058138	81058338	+	653.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358550, intron 1 of 11)	B4|SINE|B4	1938.0	NM_001358549	52551.0	Mm.30068	NM_024499	ENSMUSG00000004937	Sgta	5330427H01Rik|AI194281|D10Ertd190e|Sgt|Stg	small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122459401-2	chr8	122459301	122459501	+	836.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_013914, intron 1 of 2)	intron (NM_013914, intron 1 of 2)	1291.0	NM_013914	30927.0	Mm.103673	NM_013914	ENSMUSG00000006587	Snai3	AI643946|Smuc|Zfp293	snail family zinc finger 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-69008052-4	chr8	69007951	69008151	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-80685.0	NM_007509	11966.0	Mm.249096	NM_007509	ENSMUSG00000006273	Atp6v1b2	AI194269|AI790362|Atp6b2|HO57|R74844	ATPase, H+ transporting, lysosomal V1 subunit B2	protein-coding	6.31682535042622	5.42666856293158	5.67305236930899	6.08861603888282	5.62624088305096	5.62232600799051	5.19638175109479	4.85654350927983	-0.638203745273037	0.0313101741603349	0.243829166751859
Merged-chr1-83727407-2	chr1	83727307	83727507	+	591.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-319207.0	NM_001356547	77629.0	Mm.154303	NM_172430	ENSMUSG00000026163	Sphkap	4930544G21Rik|A930009L15Rik|AI852220|SKIP|mKIAA1678	SPHK1 interactor, AKAP domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132330909-3	chr4	132330755	132330955	+	834.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-1317.0	NM_027925	71787.0	Mm.239183	NM_027925	ENSMUSG00000028898	Trnau1ap	1110007F05Rik|AA387999|Secp43|Trspap1|WI1-2643G14.2	tRNA selenocysteine 1 associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55737625-7	chr14	55737537	55737737	+	905.9285890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8047.0	NM_026819	52585.0	Mm.21623	NM_026819	ENSMUSG00000002332	Dhrs1	1110029G07Rik|AW112170|D14Ertd484e	dehydrogenase/reductase (SDR family) member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-79060528-4	chr2	79060422	79060622	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	190844.0	NR_151457	22193.0	Mm.1485	NM_009454	ENSMUSG00000027011	Ube2e3	Ubce4|ubcM2	ubiquitin-conjugating enzyme E2E 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-165679220-2	chr1	165679120	165679320	+	998.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038846, intron 1 of 5)	MIRc|SINE|MIR	28874.0	NM_001038846	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-74441491-2	chr1	74441391	74441591	+	627.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_176972, intron 24 of 25)	intron (NM_176972, intron 24 of 25)	32107.0	NM_009509	22349.0	Mm.471601	NM_009509	ENSMUSG00000026175	Vil1	Vil	villin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-190270381-1	chr1	190270281	190270481	+	548.0	f1_balb.idr	Intergenic	Intergenic	-99554.0	NM_008937	19130.0	Mm.132579	NM_008937	ENSMUSG00000010175	Prox1	A230003G05Rik|PROX-1	prospero homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-48100428-4	chr4	48100312	48100512	+	941.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24507.0	NM_026343	67727.0	Mm.171334	NM_026343	ENSMUSG00000061455	Stx17	4833418L03Rik|6330411F21Rik|9030425C21Rik|AW048351	syntaxin 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-120094167-3	chr2	120094082	120094282	+	613.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133838, intron 5 of 5)	intron (NM_133838, intron 5 of 5)	60393.0	NM_133838	98878.0	Mm.132226	NM_133838	ENSMUSG00000027293	Ehd4	2210022F10Rik|AI197390|AI846352|AV006278|Past2	EH-domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107971861-2	chr9	107971761	107971961	+	780.583313	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011634, exon 15 of 15)	3' UTR (NM_011634, exon 15 of 15)	-3706.0	NM_023738	74153.0	Mm.277125	NM_023738	ENSMUSG00000032596	Uba7	1300004C08Rik|Ube1l	ubiquitin-like modifier activating enzyme 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-102041547-2	chr11	102041447	102041647	+	881.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001160713)	promoter-TSS (NM_001160713)	36.0	NM_001160713	52685.0	Mm.266885	NM_027987	ENSMUSG00000017309	Cd300lg	2310016B05Rik|Clm9|D11Ertd736e	CD300 molecule like family member G	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-8028571-2	chr6	8028471	8028671	+	631.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037865, intron 27 of 34)	intron (NM_001037865, intron 27 of 34)	164046.0	NM_001037865	213945.0	Mm.297404	NM_001037865	ENSMUSG00000068794	Col28a1	Col28|Gm466	collagen, type XXVIII, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-90132580-4	chr7	90132477	90132677	+	984.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360867, intron 1 of 19)	intron (NM_001360867, intron 1 of 19)	2364.0	NM_001252520	233489.0	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	1.72180412327824	2.08584538268843	1.86510179070924	2.82856065862847	1.87096594888557	1.94430610999394	1.24623891377049	2.57194624252832	-0.497354065675328	0.617710895079234	0.977517868708383
Merged-chr14-107559016-2	chr14	107558916	107559116	+	573.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-1072496.0	NR_045938	73631.0	Mm.48862	NR_045938	ENSMUSG00000099794	1700128A07Rik	-	RIKEN cDNA 1700128A07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-89200919-3	chr6	89200806	89201006	+	664.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15273.0	NR_033190	330379.0	Mm.297741	NM_201356		Gm839	-	predicted gene 839	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46607694-4	chr19	46607602	46607802	+	972.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177812, intron 2 of 4)	intron (NM_001177812, intron 2 of 4)	8596.0	NM_146099	226178.0	Mm.329895	NM_146099	ENSMUSG00000047731	Wbp1l	D19Wsu162e|Opal1	WW domain binding protein 1 like	protein-coding	4.41688772097628	5.03815442677548	5.53377746956618	5.10883788672715	4.53484458717994	4.8533406686751	4.44741449887587	4.06813619381641	-0.703272134047605	0.0602317743166721	0.36309990136288
Merged-chr11-83645506-2	chr11	83645406	83645606	+	680.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3872.0	NM_011337	20302.0	Mm.1282	NM_011337	ENSMUSG00000000982	Ccl3	AI323804|G0S19-1|LD78alpha|MIP-1alpha|MIP1-(a)|MIP1-alpha|Mip1a|Scya3	chemokine (C-C motif) ligand 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-5054089-3	chr7	5053995	5054195	+	864.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_026900)	TTS (NM_026900)	-2057.0	NM_001290429	232821.0	Mm.482157	NM_146178	ENSMUSG00000035228	Ccdc106	BC018462	coiled-coil domain containing 106	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-86807859-4	chr8	86807675	86807875	+	636.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61769.0	NM_009172	20437.0	Mm.324553	NM_009172	ENSMUSG00000036840	Siah1a	AA982064|AI853500|Sinh1a	siah E3 ubiquitin protein ligase 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-31252059-2	chr5	31251959	31252159	+	702.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001347326)	TTS (NM_001347326)	353.0	NM_027221	69815.0	Mm.389609	NM_027221	ENSMUSG00000029149	Krtcap3	2010001C09Rik|AW321088|Kcp3	keratinocyte associated protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116397590-3	chr11	116397498	116397698	+	995.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027258, intron 1 of 18)	URR1B|DNA|hAT-Charlie	15434.0	NM_027258	217340.0	Mm.426344	NM_027258	ENSMUSG00000052949	Rnf157	2610036E23Rik|A130073L17Rik|mKIAA1917	ring finger protein 157	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69883168-2	chr11	69883068	69883268	+	557.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153788, intron 18 of 21)	intron (NM_153788, intron 18 of 21)	-1074.0	NR_105889	102466208.0		NR_105889	ENSMUSG00000104996	Mir6924	mmu-mir-6924	microRNA 6924	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-136016036-3	chr4	136015945	136016145	+	885.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013736, intron 1 of 10)	intron (NM_013736, intron 1 of 10)	5604.0	NM_013736	27224.0	Mm.27663	NM_013736	ENSMUSG00000028668	Eloa	110kDa|AA408125|Tceb3|Tceb3a	elongin A	protein-coding	-0.662826441749988	-1.00555184936033	-1.01675512286785	-1.01992432642343	-0.654846858003193	-1.00312405325568	-1.01421894731451	-1.01959449741028	0.0418081237259606	0.989738874530268	1
Merged-chr2-127273957-4	chr2	127273850	127274050	+	897.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139308, intron 1 of 7)	(TG)n|Simple_repeat|Simple_repeat	3721.0	NM_139308	99138.0	Mm.41271	NM_139308	ENSMUSG00000027367	Stard7	AI852671|AL022671|AW544915	START domain containing 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-102649140-3	chr4	102649035	102649235	+	639.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	59292.0	NM_001177981	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	0.751803957531972	0.814516870341821	0.794699246260431	0.778945567271269	1.64036647398215	2.09066745094276	1.69462305647942	2.0167987655455	5.30836937807453	0.000235826083891944	0.00614205793314518
Merged-chr5-107360088-2	chr5	107359988	107360188	+	813.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_054054, intron 13 of 18)	intron (NM_054054, intron 13 of 18)	28894.0	NM_054054	114642.0	Mm.182836	NM_054054	ENSMUSG00000029279	Brdt	7420412D09Rik|Brd6|Fsrg3	bromodomain, testis-specific	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-97961280-3	chr3	97961214	97961414	+	784.56665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033779, intron 1 of 1)	MLT1C|LTR|ERVL-MaLR	31141.0	NM_001033779	433632.0	Mm.212421	NM_001033779		Gm5544	EG433632	predicted gene 5544	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6511291-2	chr19	6511191	6511391	+	632.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205234, intron 19 of 22)	intron (NM_001205234, intron 19 of 22)	31779.0	NM_009203	20521.0	Mm.391146	NM_009203	ENSMUSG00000061742	Slc22a12	AI987855|OAT4L|Rst|Slc22al2|URAT1	solute carrier family 22 (organic anion/cation transporter), member 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98768909-2	chr11	98768809	98769009	+	568.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001313983)	TTS (NM_001313983)	6468.0	NM_145434	217166.0	Mm.390397	NM_145434	ENSMUSG00000020889	Nr1d1	A530070C09Rik|R75201	nuclear receptor subfamily 1, group D, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-152191256-1	chr3	152191156	152191356	+	545.0	f0_balb.idr	intron (NM_001356364, intron 1 of 2)	tRNA-Ala-GCY_|tRNA|tRNA	2589.0	NM_025926	67035.0	Mm.46746	NM_025926	ENSMUSG00000028035	Dnajb4	1700029A20Rik|2010306G19Rik|5730460G06Rik	DnaJ heat shock protein family (Hsp40) member B4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-34485184-3	chr8	34485107	34485307	+	716.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	155109.0	NR_040706	330734.0	Mm.149998	NR_040706	ENSMUSG00000109819	B930018H19Rik	B930018H19	RIKEN cDNA B930018H19 gene	ncRNA	-2.05752322593321	-2.15521190974092	-2.16307242109104	-2.16952927915413	-2.17938029103484	-2.15350850414045	-2.16129297361887	-2.16837350464794	-0.683654500252594	0.846597994014493	1
Merged-chr4-116720820-4	chr4	116720738	116720938	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146151)	promoter-TSS (NM_146151)	-117.0	NM_146151	230661.0	Mm.482431	NM_146151	ENSMUSG00000033985	Tesk2	-	testis-specific kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-65695519-2	chr5	65695419	65695619	+	634.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081321, intron 2 of 31)	URR1A|DNA|hAT-Charlie	2337.0	NM_001081321	71521.0	Mm.278974	NM_027818	ENSMUSG00000029202	Pds5a	9030416H16Rik|E230024D05Rik|mKIAA0648	PDS5 cohesin associated factor A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-40093693-4	chr10	40093602	40093802	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 1 of 5)	intron (NM_001114332, intron 1 of 5)	48552.0	NM_028247	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-95151283-4	chr10	95151177	95151377	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-5452.0	NR_131146	628062.0		NR_131146	ENSMUSG00000112481	Gm29684	-	predicted gene, 29684	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-68063409-3	chr11	68063294	68063494	+	735.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018768, intron 6 of 7)	intron (NM_018768, intron 6 of 7)	96936.0	NM_018768	55943.0	Mm.3973	NM_018768	ENSMUSG00000020903	Stx8	0610007H08Rik|1110002H11Rik|4930571E13Rik|CARB	syntaxin 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-40476351-4	chr6	40476253	40476453	+	928.1416630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_212468, intron 3 of 6)	intron (NM_212468, intron 3 of 6)	4885.0	NM_001286663	381760.0	Mm.276356	NM_028358	ENSMUSG00000029911	Ssbp1	2810480P10Rik|G630031O20Rik|MtSSB|mtDBP	single-stranded DNA binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-128756308-4	chr4	128756197	128756397	+	872.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2961.0	NM_001009819	215493.0	Mm.300900	NM_001009819	ENSMUSG00000028794	A3galt2	Gm433|iGb3|iGb3S	alpha 1,3-galactosyltransferase 2 (isoglobotriaosylceramide synthase)	protein-coding	1.40595477444185	1.71312341420892	1.87177704734967	1.33671448212833	1.28534297870986	1.0054044146455	1.9822620132051	1.34293545478741	-0.450770449517297	0.701431703616553	0.998431161219273
Merged-chr3-79299604-1	chr3	79299504	79299704	+	621.5	f0_balb.idr	Intergenic	ID_B1|SINE|B4	-45772.0	NM_001142953	100233207.0	Mm.373801	NM_001142953	ENSMUSG00000091685	Gm17359	-	predicted gene, 17359	protein-coding	0.0513330823252378	-0.286964708557393	-0.290782542931373	-0.293714828038391	0.0593339199323215	-0.286101430399074	-0.28994216212351	0.212622381468184	1.36073382836348	0.586205596296971	1
Merged-chr17-81493387-3	chr17	81493287	81493487	+	837.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 2 of 8)	intron (NR_104580, intron 2 of 8)	245000.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-22008211-4	chr11	22008107	22008307	+	906.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252515, intron 23 of 24)	intron (NM_001252515, intron 23 of 24)	-6556.0	NM_011023	18423.0	Mm.129663	NM_011023	ENSMUSG00000005917	Otx1	A730044F23Rik|jv	orthodenticle homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124902151-3	chr6	124902098	124902298	+	768.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9507.0	NM_008479	16768.0	Mm.4528	NM_008479	ENSMUSG00000030124	Lag3	CD223|LAG-3|Ly66	lymphocyte-activation gene 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80948717-4	chr10	80948551	80948751	+	772.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010319)	TTS (NM_010319)	18560.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-80151775-4	chr18	80151620	80151820	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175028)	promoter-TSS (NM_175028)	-238.0	NM_175028	240442.0	Mm.26594	NM_175028	ENSMUSG00000053950	Adnp2	8430420L05Rik|BC024969|Kiaa0863|Zfp508|mKIAA0863	ADNP homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-153489354-4	chr1	153489286	153489486	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1726.0	NM_007842	13211.0	Mm.20000	NM_007842	ENSMUSG00000042699	Dhx9	AI326842|Ddx9|HEL-5|NDHII|RHA|mHEL-5	DEAH (Asp-Glu-Ala-His) box polypeptide 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-163535122-4	chr2	163535019	163535219	+	984.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001312906, intron 1 of 10)	intron (NM_001312906, intron 1 of 10)	6602.0	NR_027970	68314.0	Mm.46190	NM_197983	ENSMUSG00000046840	Hnf4aos	0610008F07Rik	hepatic nuclear factor 4 alpha, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-128312394-2	chr3	128312294	128312494	+	549.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-80789.0	NR_045704	402774.0	Mm.209170	NR_045704	ENSMUSG00000105816	D030025E07Rik	-	RIKEN cDNA D030025E07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81695117-2	chr15	81695017	81695217	+	576.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001164320, exon 3 of 6)	exon (NM_001164320, exon 3 of 6)	2170.0	NM_001164320	214685.0	Mm.393287	NM_001164320	ENSMUSG00000063765	Chadl	AY100452|D930017K21Rik	chondroadherin-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-9111605-2	chr4	9111505	9111705	+	918.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-157688.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-111546455-3	chr8	111546364	111546564	+	879.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168623, intron 1 of 4)	intron (NM_001168623, intron 1 of 4)	8121.0	NM_001168623	170737.0	Mm.271578	NM_133206	ENSMUSG00000033545	Znrf1	B830022L21Rik|Rnf42|Zrfp1|nin283	zinc and ring finger 1	protein-coding	1.25151149177521	2.09840088453899	1.32832951991302	1.61950896258439	1.96647646039185	2.00204537328137	1.81286200762004	1.47885843033826	0.648450303280919	0.543757168388598	0.955585568541497
Merged-chr9-44587482-4	chr9	44587393	44587593	+	962.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17399.0	NM_001110826	13209.0	Mm.267061	NM_007841	ENSMUSG00000032097	Ddx6	1110001P04Rik|C430015D01Rik|E230023J21Rik|HLR2|mRCK/P54|p54|rck	DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-54695419-2	chr13	54695319	54695519	+	548.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1459.0	NR_027396	105239.0	Mm.25366	NM_134064	ENSMUSG00000034928	Rnf44	AI854545|mKIAA1100	ring finger protein 44	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-10555376-4	chr10	10555280	10555480	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026405, intron 1 of 2)	intron (NM_026405, intron 1 of 2)	2827.0	NM_026405	67844.0	Mm.31486	NM_026405	ENSMUSG00000019832	Rab32	2810011A17Rik|AU022057	RAB32, member RAS oncogene family	protein-coding	1.84899618639342	1.97511630898418	1.64664922190499	1.06075042310087	2.11415226001184	1.99057594975161	1.65945214573943	1.06361599564284	0.277879287672515	0.812379937218346	0.998431161219273
Merged-chr10-127661339-2	chr10	127661239	127661439	+	890.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_009284)	TTS (NM_009284)	5364.0	NM_001122895	17937.0	Mm.336898	NM_008668	ENSMUSG00000025402	Nab2	AI451907	Ngfi-A binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-62649243-2	chr11	62649143	62649343	+	815.833374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198861)	promoter-TSS (NM_198861)	579.0	NM_175002	216829.0	Mm.295306	NM_175002	ENSMUSG00000048497	Mmgt2	AI852046	membrane magnesium transporter 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-131254159-4	chr2	131254063	131254263	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7845.0	NM_001355681	74450.0	Mm.101264	NM_153501	ENSMUSG00000037514	Pank2	4933409I19Rik|AI642621	pantothenate kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-84710073-2	chr3	84709973	84710173	+	630.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43881.0	NM_177260	320782.0	Mm.107370	NM_177260	ENSMUSG00000056498	Tmem154	9930117H01Rik	transmembrane protein 154	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-34505277-2	chr19	34505177	34505377	+	751.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111100, intron 6 of 9)	intron (NM_001111100, intron 6 of 9)	22197.0	NM_001111100	16889.0	Mm.157545	NM_021460	ENSMUSG00000024781	Lipa	AA960673|Lal|Lip-1|Lip1	lysosomal acid lipase A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-179507173-2	chr1	179507073	179507273	+	952.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_027188, intron 1 of 11)	B2_Mm2|SINE|B2	10868.0	NM_027188	69726.0	Mm.222338	NM_027188	ENSMUSG00000055067	Smyd3	2410008A19Rik|Zmynd1	SET and MYND domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-35972411-4	chr1	35972331	35972531	+	917.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-95969.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-123207663-4	chr7	123207547	123207747	+	936.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7219.0	NM_146198	233836.0	Mm.211838	NM_146198	ENSMUSG00000030769	Slc5a11	2010013B02Rik|Kst1|RKST2|SMIT2|Slc5a10	solute carrier family 5 (sodium/glucose cotransporter), member 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-48198602-4	chr17	48198497	48198697	+	819.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31340.0	NM_178796	328830.0	Mm.470939	NM_178796	ENSMUSG00000043939	A530064D06Rik	Trem4|pdctrem	RIKEN cDNA A530064D06 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-52381018-2	chr10	52380918	52381118	+	661.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_053187, intron 1 of 7)	intron (NM_053187, intron 1 of 7)	1106.0	NM_053187	94221.0	Mm.390258	NM_053187	ENSMUSG00000019861	Gopc	2210402P09Rik|AI844555|CAL|FIG|GOPC1|PIST	golgi associated PDZ and coiled-coil motif containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-38921397-2	chr6	38921297	38921497	+	688.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 1 of 12)	intron (NM_011539, intron 1 of 12)	2411.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4305230-2	chr19	4305130	4305330	+	996.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_130863, intron 1 of 21)	intron (NM_130863, intron 1 of 21)	992.0	NM_130863	110355.0	Mm.254144	NM_130863	ENSMUSG00000024858	Grk2	Adrbk-1|Adrbk1|Bark-1|beta ARK|betaARK1	G protein-coupled receptor kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-129940950-4	chr5	129940846	129941046	+	979.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L4_B_Mam|LINE|RTE-X	-1163.0	NM_001001327	69568.0	Mm.288718	NM_027121	ENSMUSG00000066735	Vkorc1l1	2310024K08Rik	vitamin K epoxide reductase complex, subunit 1-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64229163-4	chr5	64229056	64229256	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019636, intron 2 of 19)	MLT1F2|LTR|ERVL-MaLR	-1201.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-110162771-2	chr7	110162671	110162871	+	554.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40712.0	NM_009516	22390.0	Mm.287173	NM_009516	ENSMUSG00000031016	Wee1	Wee1A	WEE 1 homolog 1 (S. pombe)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-80435191-4	chr12	80435106	80435306	+	990.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177267, intron 1 of 8)	CpG	1395.0	NM_177267	320808.0	Mm.220310	NM_177267	ENSMUSG00000049106	Dcaf5	9430020B07Rik|AI325023|AI430035|AI848110|AW124614|BCRG2|BCRP2|Wdr22	DDB1 and CUL4 associated factor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-59263181-4	chr10	59263085	59263285	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41263.0	NM_172939	268301.0	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-21845827-4	chr17	21845711	21845911	+	864.087524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029281)	promoter-TSS (NM_029281)	-52.0	NM_029281	75424.0	Mm.271252	NM_029281	ENSMUSG00000069743	Zfp820	2610036F08Rik	zinc finger protein 820	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-90374165-2	chr3	90374065	90374265	+	557.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15773.0	NM_001316688	26568.0	Mm.45519	NM_011988	ENSMUSG00000027932	Slc27a3	Acsvl3|FATP-3|FATP3|Vlcs-3	solute carrier family 27 (fatty acid transporter), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-34587521-3	chr15	34587445	34587645	+	663.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145469, intron 6 of 10)	intron (NM_145469, intron 6 of 10)	-87528.0	NR_045883	71637.0	Mm.410827	NR_045883	ENSMUSG00000115526	4930413F20Rik	-	RIKEN cDNA 4930413F20 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-5805604-4	chr10	5805535	5805735	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025995)	promoter-TSS (NM_025995)	-170.0	NM_025995	67141.0	Mm.197520	NM_025995	ENSMUSG00000019773	Fbxo5	2510044I10Rik|C85305|Emi1|Fbxo31	F-box protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-107876196-4	chr4	107876068	107876268	+	863.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033496, exon 21 of 21)	non-coding (NR_033496, exon 21 of 21)	-3587.0	NM_001282737	17149.0	Mm.808	NM_001282737	ENSMUSG00000028609	Magoh	Mago-m|Mos2	mago homolog, exon junction complex core component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71247530-1	chr17	71247430	71247630	+	921.0	f1_c57bl6.idr	3' UTR (NM_001164885, exon 20 of 20)	3' UTR (NM_001164885, exon 20 of 20)	42876.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-148732468-4	chr2	148732388	148732588	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019632)	promoter-TSS (NM_019632)	-68.0	NM_019632	17957.0	Mm.274308	NM_019632	ENSMUSG00000027438	Napb	Brp14|E161|I47|SNARE|b-SNAP	N-ethylmaleimide sensitive fusion protein attachment protein beta	protein-coding	3.81691725491095	3.72149037048305	5.7568922131806	3.2667544874978	4.82995490118135	4.50074815547719	4.61514684193852	3.9119003253871	-0.0471007344435765	0.93167960647021	0.998431161219273
Merged-chr4-57957587-6	chr4	57957542	57957742	+	915.111084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1231.0	NM_011660	22166.0	Mm.260618	NM_011660	ENSMUSG00000028367	Txn1	ADF|AW550880|Trx1|Txn	thioredoxin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-146811325-3	chr3	146811195	146811395	+	853.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011100, intron 1 of 9)	intron (NM_011100, intron 1 of 9)	1651.0	NM_011100	18749.0	Mm.16766	NM_011100	ENSMUSG00000005034	Prkacb	CbPKA|Pkacb	protein kinase, cAMP dependent, catalytic, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-5986608-4	chr18	5986506	5986706	+	855.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	149492.0	NM_029277	75415.0	Mm.239675	NM_029277	ENSMUSG00000041225	Arhgap12	2810011M08Rik	Rho GTPase activating protein 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-25224839-4	chr2	25224735	25224935	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146116)	promoter-TSS (NM_146116)	-133.0	NM_146116	227613.0	Mm.227260	NM_146116	ENSMUSG00000036752	Tubb4b	4930542G03Rik|Tubb2c|Tubb2c1	tubulin, beta 4B class IVB	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99002321-2	chr15	99002221	99002421	+	564.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D-int|LTR|ERVL-MaLR	16356.0	NR_045991	75951.0	Mm.441657	NR_045991	ENSMUSG00000097587	4930578M01Rik	3010001K12Rik	RIKEN cDNA 4930578M01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141004032-2	chr4	141003932	141004132	+	647.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_029097, exon 21 of 29)	exon (NM_029097, exon 21 of 29)	-6392.0	NM_001161799	17150.0	Mm.7386	NM_008546	ENSMUSG00000060572	Mfap2	AI893631|Magp|Magp1	microfibrillar-associated protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120563804-1	chr11	120563704	120563904	+	606.0	f1_balb.idr	intron (NM_011032, intron 5 of 10)	intron (NM_011032, intron 5 of 10)	9449.0	NM_011032	18453.0	Mm.16660	NM_011032	ENSMUSG00000025130	P4hb	ERp59|PDI|Pdia1|Thbp	prolyl 4-hydroxylase, beta polypeptide	protein-coding	1.44466539431043	1.45765881657101	0.992391009042764	1.77362793765171	1.58061858388958	1.9151939610529	0.996827904427332	2.30155426676529	1.06626294736505	0.375981318786884	0.869176081465326
Merged-chr15-84212291-3	chr15	84212187	84212387	+	674.377747	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178614, intron 14 of 14)	intron (NM_178614, intron 14 of 14)	-19756.0	NM_133167	170736.0	Mm.323892	NM_133167	ENSMUSG00000022438	Parvb	AI595373|AW742462|D15Gsk1|affixin	parvin, beta	protein-coding	1.63907418424266	1.44738688184593	1.15598403658825	2.30398611631309	2.2803632348822	2.65798632903953	1.41388374049295	2.12059175764322	1.21892151802224	0.248775199886241	0.74758343357745
Merged-chr11-93994734-2	chr11	93994634	93994834	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1357.0	NM_001199203	70834.0	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-36981463-2	chr17	36981363	36981563	+	753.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029747)	promoter-TSS (NM_029747)	-226.0	NM_029747	76797.0	Mm.159787	NM_029747	ENSMUSG00000064308	2410137M14Rik	-	RIKEN cDNA 2410137M14 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-100666841-1	chr12	100666741	100666941	+	727.0	f1_balb.idr	intron (NM_153587, intron 2 of 17)	LTR16A1|LTR|ERVL	58279.0	NM_001330702	73086.0	Mm.220417	NM_153587	ENSMUSG00000021180	Rps6ka5	3110005L17Rik|6330404E13Rik|AI854034|MSK1|MSPK1|RLPK|RLSK|S6K-alpha-5	ribosomal protein S6 kinase, polypeptide 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-37146348-4	chr19	37146207	37146407	+	878.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198300, intron 2 of 10)	B1F1|SINE|Alu	-27536.0	NR_045329	319931.0	Mm.446730	NR_045329	ENSMUSG00000097591	A330032B11Rik	-	RIKEN cDNA A330032B11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-35799448-4	chr12	35799363	35799563	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-104345.0	NR_045050	71581.0	Mm.100110	NR_045050	ENSMUSG00000113985	9130015A21Rik	100043575|Gm4527	RIKEN cDNA 9130015A21 gene	ncRNA	3.15801041550707	3.80303424061869	3.11922551110333	3.84340167846381	3.62479109417557	3.47791261149922	3.54615005394074	4.34862094476605	0.420216223072563	0.430211571541787	0.904182839313037
Merged-chr18-12183195-2	chr18	12183095	12183295	+	687.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029623, intron 10 of 19)	intron (NM_029623, intron 10 of 19)	14465.0	NM_029623	76482.0	Mm.196596	NM_029623	ENSMUSG00000024410	3110002H16Rik	2400010D15Rik|Mic-1|Mic1|Rmc1|Wdr98	RIKEN cDNA 3110002H16 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-40815527-2	chr12	40815427	40815627	+	652.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 39 of 52)	L1MB5|LINE|L1	-208563.0	NM_053122	93757.0	Mm.363813	NM_053122	ENSMUSG00000056899	Immp2l	AI853880|IMP2|Tg(HLA-A/H2-D)2Enge	IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-79505257-2	chr15	79505140	79505340	+	704.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008427)	promoter-TSS (NM_008427)	1.0	NM_008427	16520.0	Mm.39759	NM_008427	ENSMUSG00000044216	Kcnj4	IRK3|Kcnf2|MB-IRK3	potassium inwardly-rectifying channel, subfamily J, member 4	protein-coding	0.351475806014158	0.00133045669978787	0.440180516425709	-0.00775549113306356	0.129146766107094	0.611335679212783	-0.00266998792004208	-0.00706497885196733	0.00552034875490889	0.997922969204878	1
Merged-chr10-29361367-4	chr10	29361263	29361463	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110198, intron 1 of 3)	(A)n|Simple_repeat|Simple_repeat	1079.0	NM_026518	68031.0	Mm.28930	NM_026518	ENSMUSG00000038876	Rnf146	2610509H23Rik|Iduna	ring finger protein 146	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-140610330-4	chr6	140610234	140610434	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-12329.0	NM_178803	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-81591332-2	chr18	81591232	81591432	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	400748.0	NR_039589	100628596.0		NR_039589	ENSMUSG00000093036	Mir5127	mmu-mir-5127|mu-mir-5127	microRNA 5127	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-33271828-4	chr4	33271646	33271846	+	729.474976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-22959.0	NM_001033225	108767.0	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-77491671-2	chr11	77491571	77491771	+	921.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1741.0	NM_001004144	216963.0	Mm.290182	NM_001004144	ENSMUSG00000011877	Git1	Cat-1|p95Cat	G protein-coupled receptor kinase-interactor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-82915601-2	chr18	82915501	82915701	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177464, intron 1 of 5)	intron (NM_001177464, intron 1 of 5)	969.0	NM_001177464	329003.0	Mm.326526	NM_183033	ENSMUSG00000058881	Zfp516	C330029B10Rik|D230016L03|Zfp26l|Znf516|mKIAA0222	zinc finger protein 516	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-156316606-1	chr2	156316506	156316706	+	669.0	f1_balb.idr	intron (NM_027585, intron 1 of 12)	intron (NM_027585, intron 1 of 12)	-3902.0	NM_020255	19018.0	Mm.389346	NM_020255	ENSMUSG00000046229	Scand1	2310003H23Rik|Leap1|PGC-2|Ppargc2	SCAN domain-containing 1	protein-coding	2.10303510339515	1.53932438988135	2.95556284561767	2.22252739000071	1.58563830390917	1.2723097213578	2.051589288512	2.68450349703689	-0.656416743385448	0.513806386635477	0.9463431014646
Merged-chr10-19915489-4	chr10	19915396	19915596	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7822.0	NM_001161825	18634.0	Mm.338363	NM_008822	ENSMUSG00000020003	Pex7	MmPEX7	peroxisomal biogenesis factor 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134266399-3	chr6	134266273	134266473	+	842.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007961, exon 8 of 8)	exon (NM_007961, exon 8 of 8)	-129956.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-3409234-4	chr11	3409133	3409333	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010718)	promoter-TSS (NM_010718)	5.0	NM_010718	16886.0	Mm.124176	NM_010718	ENSMUSG00000020451	Limk2	Limk-2|whe	LIM motif-containing protein kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-77660648-2	chr9	77660548	77660748	+	859.166626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_172925)	TTS (NM_172925)	23916.0	NM_172925	244923.0	Mm.138238	NM_172925	ENSMUSG00000044938	Klhl31	9830147P19Rik|D930047P17Rik|Kbtbd1	kelch-like 31	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-120888183-2	chr5	120888083	120888283	+	729.083313	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011852)	promoter-TSS (NM_011852)	-570.0	NR_126529	23960.0	Mm.389688	NM_011852	ENSMUSG00000066861	Oas1g	AI449562|L2|Mmu-L|Mmu-L2|Oas1b|Oias-1|Oias1	2'-5' oligoadenylate synthetase 1G	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-29772598-2	chr19	29772498	29772698	+	641.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172836, intron 2 of 7)	Lx8|LINE|L1	33411.0	NM_172836	240613.0	Mm.313351	NM_172836	ENSMUSG00000046138	9930021J03Rik	Gm9832|mKIAA2026	RIKEN cDNA 9930021J03 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-83754459-3	chr2	83754350	83754550	+	714.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008402, intron 3 of 29)	MTD|LTR|ERVL-MaLR	30053.0	NM_008402	16410.0	Mm.227	NM_008402	ENSMUSG00000027087	Itgav	1110004F14Rik|2610028E01Rik|CD51|D430040G12Rik	integrin alpha V	protein-coding	-0.105716345639601	-0.0893433270301316	-0.0946979392902269	0.212205102486162	0.387221422665882	0.657259370895134	-0.0935161929571123	-0.0981120960752971	2.22233034334312	0.338472144322225	1
Merged-chr2-5613804-4	chr2	5613692	5613892	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290374, intron 1 of 9)	intron (NM_001290374, intron 1 of 9)	62254.0	NM_001290376	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-135355665-1	chr6	135355565	135355765	+	558.0	f0_balb.idr	Intergenic	Intergenic	-7266.0	NM_010128	13730.0	Mm.182785	NM_010128	ENSMUSG00000030208	Emp1	I-8-09|TMP	epithelial membrane protein 1	protein-coding	-1.39239040096365	-1.50706362993767	-1.51637061241093	-1.52401564492204	-1.25712099376264	-1.5050467680107	-1.51426371558223	-1.52264718775774	0.640753741356348	0.855918148133186	1
Merged-chr10-75667593-10	chr10	75667541	75667741	+	999.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172549, intron 29 of 36)	CpG	-23633.0	NM_027890	71733.0	Mm.247956	NM_027890	ENSMUSG00000006342	Susd2	1200011D11Rik	sushi domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-19120111-4	chr2	19120026	19120226	+	924.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-78992.0	NM_001271563	70882.0	Mm.276696	NM_001081083	ENSMUSG00000037683	Armc3	4921513G22Rik	armadillo repeat containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-4131310-2	chr7	4131210	4131410	+	941.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001305822, exon 10 of 14)	exon (NM_001305822, exon 10 of 14)	5616.0	NR_033548	100037396.0	Mm.447887	NR_033548	ENSMUSG00000085886	D030047H15Rik	Gm15924	RIKEN cDNA D030047H15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-101676691-1	chr13	101676591	101676791	+	590.0	f1_c57bl6.idr	Intergenic	Intergenic	15939.0	NM_001024955	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-108625806-3	chr8	108625724	108625924	+	686.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41147.0	NR_077224	109215.0	Mm.65282	NR_077224	ENSMUSG00000110613	Lncbate1	3010033K07Rik|Lnc-BATE1	brown adipose tissue enriched long non-coding RNA 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75572314-2	chr11	75572214	75572414	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199284, intron 13 of 13)	intron (NM_001199284, intron 13 of 13)	-15765.0	NM_008850	18738.0	Mm.3128	NM_008850	ENSMUSG00000017781	Pitpna	Pitpn|vb|vibrator	phosphatidylinositol transfer protein, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-17693135-4	chr12	17693039	17693239	+	823.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016677, intron 1 of 3)	intron (NM_016677, intron 1 of 3)	2330.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141861549-1	chr4	141861449	141861649	+	588.0	f1_balb.idr	intron (NM_025994, intron 2 of 3)	intron (NM_025994, intron 2 of 3)	13371.0	NM_025994	27984.0	Mm.395598	NM_025994	ENSMUSG00000040659	Efhd2	2600015J22Rik|AA408606|D4Wsu27e	EF hand domain containing 2	protein-coding	0.875023649005946	1.12272568421217	1.39393978204693	1.47078678301851	1.405819675032	1.45394479453489	1.40487378243452	1.47864796155182	0.798951645898705	0.521806787335702	0.947836760490745
Merged-chr8-70756830-2	chr8	70756730	70756930	+	792.229126	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166399, intron 3 of 4)	intron (NM_001166399, intron 3 of 4)	2151.0	NM_001166399	19339.0	Mm.5083	NM_009001	ENSMUSG00000031840	Rab3a	-	RAB3A, member RAS oncogene family	protein-coding	0.0683879083802602	0.302244187980236	0.0831676965502951	1.09118046265658	0.0697706862758216	0.307625298521013	0.0847414777322851	0.549417366383999	-1.24792538886839	0.537337626007498	1
Merged-chr12-113125849-2	chr12	113125749	113125949	+	549.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346696, intron 7 of 19)	intron (NM_001346696, intron 7 of 19)	-14387.0	NM_024223	68337.0	Mm.133825	NM_024223	ENSMUSG00000006356	Crip2	0610010I23Rik|AW743261|C77570|CRP2|CRP4|Crp|ESP1|Hlp	cysteine rich protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-34110150-1	chr8	34110050	34110250	+	545.0	f1_balb.idr	Intergenic	L1_Rod|LINE|L1	-1438.0	NM_011722	22428.0	Mm.150373	NM_011722	ENSMUSG00000031516	Dctn6	AU044699|WS-3|p27	dynactin 6	protein-coding	1.34453666049619	1.68418342699484	2.00996138670729	1.22689698820612	1.94931522733363	1.04411018263644	1.2671498811711	2.57781906973411	0.747911298323292	0.517298991301051	0.947641799425091
Merged-chr15-28833904-2	chr15	28833804	28834004	+	624.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus1|LINE|L1	630138.0	NM_133365	110082.0	Mm.248464	NM_133365	ENSMUSG00000022262	Dnah5	AU022615|Dnahc5|Mdnah5|b2b1134Clo|b2b1154Clo|b2b1537Clo|b2b1565Clo|b2b3491Clo|b2b601Clo|mKIAA1603	dynein, axonemal, heavy chain 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-69795552-3	chr14	69795449	69795649	+	719.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153514, intron 6 of 9)	intron (NM_153514, intron 6 of 9)	9996.0	NM_153514	246710.0	Mm.102367	NM_153514	ENSMUSG00000022075	Rhobtb2	Dbc2|E130206H14Rik|mKIAA0717	Rho-related BTB domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-32406838-2	chr18	32406738	32406938	+	900.099976	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360876, intron 2 of 17)	intron (NM_001360876, intron 2 of 17)	-28554.0	NR_045403	402767.0	Mm.385109	NR_045403	ENSMUSG00000097413	A830052D11Rik	-	RIKEN cDNA A830052D11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-33757084-2	chr1	33757019	33757219	+	604.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_145392, intron 1 of 2)	intron (NM_145392, intron 1 of 2)	631.0	NM_145392	213539.0	Mm.247037	NM_145392	ENSMUSG00000042215	Bag2	2610042A13Rik|BC016230	BCL2-associated athanogene 2	protein-coding	0.597498823069966	0.244473567489455	0.238168098144422	0.943806815364675	0.606152724444667	0.245894424668256	0.23955915296358	0.660837156964855	-0.579024326984997	0.765895522944644	1
Merged-chr5-41438195-2	chr5	41438095	41438295	+	616.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A0|LTR|ERVL-MaLR	269496.0	NM_001310592	100972.0	Mm.41555	NM_027295	ENSMUSG00000029128	Rab28	2700023P08Rik|AW496496	RAB28, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-37117713-2	chr5	37117613	37117813	+	635.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347348, intron 8 of 20)	intron (NM_001347348, intron 8 of 20)	32477.0	NM_001347348	76071.0	Mm.85280	NM_178394	ENSMUSG00000063646	Jakmip1	5830437M04Rik|C330021K24Rik|Gababrbp|Marlin-1	janus kinase and microtubule interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-79825669-2	chr10	79825569	79825769	+	714.6999509999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_030218, intron 1 of 4)	intron (NM_030218, intron 1 of 4)	4648.0	NM_030218	78906.0	Mm.33087	NM_030218	ENSMUSG00000035852	Misp	9130017N09Rik	mitotic spindle positioning	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-137649299-4	chr6	137649202	137649402	+	866.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271588)	promoter-TSS (NM_001271588)	-17.0	NM_007945	13860.0	Mm.235346	NM_007945	ENSMUSG00000015766	Eps8	AW261790	epidermal growth factor receptor pathway substrate 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-48841413-4	chr6	48841319	48841519	+	960.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164209)	promoter-TSS (NM_001164209)	-45.0	NM_001164208	65963.0	Mm.28385	NM_023056	ENSMUSG00000029810	Tmem176b	1810009M01Rik|Clast1|Lr8	transmembrane protein 176B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-75154246-6	chr5	75154097	75154297	+	879.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347719, intron 1 of 15)	intron (NM_001347719, intron 1 of 15)	1261.0	NM_001347719	18595.0	Mm.221403	NM_011058	ENSMUSG00000029231	Pdgfra	AI115593|CD140a|Pdgfr-2	platelet derived growth factor receptor, alpha polypeptide	protein-coding	0.499257488028956	0.756275185224143	0.355270800915422	0.348281388395792	0.645222239310211	1.36657543912456	0.869754995140391	0.34950671442432	2.11412908717734	0.224449938471067	1
Merged-chr6-38952663-4	chr6	38952565	38952765	+	897.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 3 of 12)	intron (NM_011539, intron 3 of 12)	33679.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-108263914-4	chr9	108263827	108264027	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001276481)	promoter-TSS (NM_001276481)	31.0	NM_001276486	13138.0	Mm.7524	NM_010017	ENSMUSG00000039952	Dag1	D9Wsu13e|DG|Dp427|Dp71	dystroglycan 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-53213629-3	chr5	53213523	53213723	+	613.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172710)	promoter-TSS (NM_172710)	-171.0	NM_172710	231238.0	Mm.235020	NM_172710	ENSMUSG00000029189	Sel1l3	2310045A20Rik|AI429585|mKIAA0746	sel-1 suppressor of lin-12-like 3 (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-19161838-2	chr3	19161738	19161938	+	610.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357689, intron 1 of 6)	intron (NM_001357689, intron 1 of 6)	1257.0	NM_028840	74252.0	Mm.200383	NM_028840	ENSMUSG00000027599	Armc1	2310016N05Rik|2900046P06Rik|3110009G21Rik|AA409258|AW048872|Arcp|C330014L16Rik	armadillo repeat containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-117220802-4	chr13	117220743	117220943	+	837.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010330, exon 1 of 9)	5' UTR (NM_010330, exon 1 of 9)	270.0	NM_010330	13723.0	Mm.274926	NM_010330	ENSMUSG00000021728	Emb	AL022799|Gp70	embigin	protein-coding	2.64583926297571	2.77101818404276	3.39237403519178	1.38519752659868	2.36901663355062	2.79217206559205	3.15078776586927	1.66000361743423	-0.241724281967376	0.785017169520192	0.998431161219273
Merged-chr3-118808998-2	chr3	118808898	118809098	+	565.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_170778, intron 7 of 22)	intron (NM_170778, intron 7 of 22)	246818.0	NM_170778	99586.0	Mm.27907	NM_170778	ENSMUSG00000033308	Dpyd	AI315208|DHPDHase|DPD|E330028L06Rik	dihydropyrimidine dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-20532360-10	chr11	20532287	20532487	+	998.68335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-10866.0	NM_021372	58172.0	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118202680-6	chr11	118202629	118202829	+	889.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	10013.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-115992052-3	chr6	115991863	115992063	+	746.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026376, intron 1 of 35)	intron (NM_026376, intron 1 of 35)	3042.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-74371560-1	chr1	74371460	74371660	+	545.0	f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	-3643.0	NM_013612	18173.0	Mm.2913	NM_013612	ENSMUSG00000026177	Slc11a1	Bcg|Ity|Ity1|Lsh|Nramp|Nramp1|ity	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-98299252-4	chr13	98299186	98299386	+	909.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17681.0	NM_145455	218490.0	Mm.371688	NM_145455	ENSMUSG00000021660	Btf3	1700054E11Rik	basic transcription factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-29875009-4	chr11	29874928	29875128	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146016, intron 7 of 41)	RMER16_Mm|LTR|ERVK	-49360.0	NM_176829	216622.0	Mm.443260	NM_176829	ENSMUSG00000078157	4931440F15Rik	Fem1ab	RIKEN cDNA 4931440F15 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-32379782-4	chr19	32379748	32379948	+	859.395874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 1 of 9)	intron (NM_144792, intron 1 of 9)	8201.0	NM_001362423	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	-0.41735798647371	-0.758443704981462	-0.59567957344391	-0.763302686810303	-0.409502964744401	-0.757821638724655	-0.760588122372649	-0.762934872443245	-0.457714908147605	0.871696125182732	1
Merged-chr3-96696400-4	chr3	96696316	96696516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146135)	promoter-TSS (NM_146135)	41.0	NM_146135	229615.0	Mm.1635	NM_018812	ENSMUSG00000028101	Pias3	Pias3l	protein inhibitor of activated STAT 3	protein-coding	4.27826616524969	2.55209380643274	4.22770949049758	2.54674012609574	4.16363936890085	3.61538416269212	3.73302019614141	2.5619187523467	-0.0474843368482502	0.94261248120522	0.998431161219273
Merged-chr4-155249996-4	chr4	155249891	155250091	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001190445)	promoter-TSS (NM_001190445)	25.0	NR_033802	67513.0	Mm.10374	NM_001190445	ENSMUSG00000073684	Faap20	2610002J02Rik	Fanconi anemia core complex associated protein 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-102967631-4	chr2	102967524	102967724	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65959.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	3.39702948816829	2.44839785724463	3.66959404782371	2.7289857090638	3.48160386289364	2.4672758396498	3.69669055963866	2.74359492276487	0.0692508323187451	0.918238032989871	0.998431161219273
Merged-chr1-65112245-4	chr1	65112158	65112358	+	811.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175293, intron 5 of 7)	intron (NM_175293, intron 5 of 7)	-8895.0	NM_007774	12964.0	Mm.26904	NM_007774	ENSMUSG00000044429	Cryga	Cryg-4|DGcry-4	crystallin, gamma A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-136497985-4	chr6	136497902	136498102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20849.0	NM_019426	54343.0	Mm.173271	NM_019426	ENSMUSG00000030213	Atf7ip	2610204M12Rik|AM|Mcaf1	activating transcription factor 7 interacting protein	protein-coding	4.57828160808834	3.94181243855701	3.69948841867342	5.03549739323064	5.43616687745764	6.19140998151583	5.61652123081773	6.10818068326353	1.67852648535866	2.32949327198296e-06	0.000132252020239361
Merged-chr2-30265861-3	chr2	30265764	30265964	+	907.138855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252568)	promoter-TSS (NM_001252568)	-339.0	NM_001252568	227696.0	Mm.297949	NM_172267	ENSMUSG00000079484	Phyhd1	-	phytanoyl-CoA dioxygenase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-60388541-4	chr10	60388451	60388651	+	974.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252635, intron 30 of 68)	intron (NM_001252635, intron 30 of 68)	-11175.0	NM_001164374	100302688.0	Mm.444135	NM_001164374	ENSMUSG00000090439	Gm17455	-	predicted gene, 17455	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-38779512-4	chr12	38779401	38779601	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007960)	promoter-TSS (NM_007960)	-581.0	NM_001347379	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	1.85618840166025	1.675582480741	2.15667069854117	1.95158171979245	2.23877524648271	2.51061518472777	2.80591705823325	2.865791877052	1.69580268997435	0.0452109687885071	0.306002935421874
Merged-chr2-132257357-2	chr2	132257257	132257457	+	622.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-4177.0	NM_011045	18538.0	Mm.7141	NM_011045	ENSMUSG00000027342	Pcna	-	proliferating cell nuclear antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-36252719-3	chr2	36252623	36252823	+	636.233337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008969)	TTS (NM_008969)	22297.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-31225673-2	chr6	31225573	31225773	+	589.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_040260, intron 1 of 5)	intron (NR_040260, intron 1 of 5)	5322.0	NR_040259	73652.0	Mm.441297	NR_040257	ENSMUSG00000087380	2210408F21Rik	-	RIKEN cDNA 2210408F21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70663840-2	chr8	70663740	70663940	+	716.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4102.0	NM_023217	66522.0	Mm.154906	NM_023217	ENSMUSG00000056204	Pgpep1	2810003H13Rik|Gm19458|PAP-I|PGP|PGP-I|PGPI|Pcp	pyroglutamyl-peptidase I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140611866-3	chr5	140611768	140611968	+	895.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008494, exon 2 of 8)	exon (NM_008494, exon 2 of 8)	4527.0	NM_008494	16848.0	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105499341-3	chr8	105499247	105499447	+	876.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2445.0	NM_175160	70796.0	Mm.100917	NM_175160	ENSMUSG00000039199	Zdhhc1	4432412D04Rik|DHHC-1	zinc finger, DHHC domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-182490605-2	chr1	182490505	182490705	+	621.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009794, intron 5 of 20)	intron (NM_009794, intron 5 of 20)	27005.0	NM_009794	12334.0	Mm.19306	NM_009794	ENSMUSG00000026509	Capn2	AI326419|CALP80|Capa-2|Capa2|m-calpain|m-calpin	calpain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-38930588-4	chr18	38930486	38930686	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033789, intron 3 of 4)	intron (NM_001033789, intron 3 of 4)	-11887.0	NM_010197	14164.0	Mm.241282	NM_010197	ENSMUSG00000036585	Fgf1	Dffrx|Fam|Fgf-1|Fgfa	fibroblast growth factor 1	protein-coding	4.41032403312701	4.25842373439363	4.56866630740033	3.9355562975937	4.26969189141296	4.74487297950551	4.55281331526059	5.03665052829718	0.462963456144155	0.233172708836385	0.728474210976025
Merged-chr17-80728201-4	chr17	80728104	80728304	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290345)	promoter-TSS (NM_001290345)	-179.0	NM_001290345	225028.0	Mm.311948	NM_001081357	ENSMUSG00000024242	Map4k3	4833416M01Rik|4833416M07Rik|9530052P13Rik|Glk|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1	mitogen-activated protein kinase kinase kinase kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-65153705-2	chr6	65153605	65153805	+	957.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	-8975.0	NM_019455	54486.0	Mm.410688	NM_019455	ENSMUSG00000029919	Hpgds	H-PGDS|Ptgds2	hematopoietic prostaglandin D synthase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-102693505-4	chr13	102693395	102693595	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008533)	promoter-TSS (NM_008533)	-52.0	NM_001360519	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-46096935-4	chr11	46096818	46097018	+	982.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291890, intron 4 of 22)	intron (NM_001291890, intron 4 of 22)	-5352.0	NR_106177	102465996.0		NR_106177	ENSMUSG00000098942	Mir8100	Gm27638|mmu-mir-8100	microRNA 8100	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-109471124-2	chr11	109471024	109471224	+	929.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001029842, intron 1 of 5)	B1F|SINE|Alu	2105.0	NM_134038	104681.0	Mm.265874	NM_134038	ENSMUSG00000041920	Slc16a6	AW743111|ESTM12|MCT 6|MCT 7|MCT6	solute carrier family 16 (monocarboxylic acid transporters), member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34342689-1	chr17	34342589	34342789	+	542.0	f1_balb.idr	intron (NM_010381, intron 3 of 3)	intron (NM_010381, intron 3 of 3)	1956.0	NM_010381	100504404.0	Mm.15680	NM_010381		H2-Ea-ps	AI323765|E-alpha-f|H-2Ea|H2-Ea|I-Ealpha|Ia-3|Ia3|MHC-H2-Ea	histocompatibility 2, class II antigen E alpha, pseudogene	protein-coding	2.71586466898413	3.04445253658406	2.3668244610149	2.76903822229194	3.10071444813371	3.24023508256139	1.81699270576392	2.31176943466986	0.0124813006656378	0.987005952706638	0.998431161219273
Merged-chr2-128734845-2	chr2	128734745	128734945	+	653.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 2 of 18)	intron (NM_008587, intron 2 of 18)	35930.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-18995711-4	chr10	18995646	18995846	+	828.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16217.0	NM_001166402	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	-1.58994551673671	-1.55912852307891	-1.56844783632235	-1.57610299769523	-1.18549093183599	-1.55710898902261	-1.56633814807757	-1.57473272746952	1.78703309985663	0.610309988231842	1
Merged-chr4-6474596-2	chr4	6474496	6474696	+	698.708374	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER12B|LTR|ERVK	-20325.0	NM_010945	18201.0	Mm.3059	NM_010945	ENSMUSG00000028245	Nsmaf	AA959567|C630007J05|Fan	neutral sphingomyelinase (N-SMase) activation associated factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-3196499-7	chr11	3196339	3196539	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2976.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-158411306-2	chr2	158411206	158411406	+	575.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291137, intron 1 of 30)	intron (NM_001291137, intron 1 of 30)	1453.0	NM_001291138	228850.0	Mm.398185	NM_177227	ENSMUSG00000027652	Ralgapb	AI507211|B230339M05Rik|p170	Ral GTPase activating protein, beta subunit (non-catalytic)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46309188-4	chr19	46309075	46309275	+	992.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001177369, exon 14 of 23)	exon (NM_001177369, exon 14 of 23)	3245.0	NM_001177370	18034.0	Mm.102365	NM_019408	ENSMUSG00000025225	Nfkb2	NF-kappaB2|lyt|p49|p49/p100|p50B|p52	nuclear factor of kappa light polypeptide gene enhancer in B cells 2, p49/p100	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-153803137-4	chr1	153803050	153803250	+	931.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001243223, intron 13 of 20)	intron (NM_001243223, intron 13 of 20)	40991.0	NM_001243223	240816.0	Mm.329340	NM_001243223	ENSMUSG00000042641	Rgsl1	4930415K13Rik|Gm202|Rgsl2	regulator of G-protein signaling like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-23889265-1	chr17	23889165	23889365	+	850.3333130000001	f1_balb.idr	Intergenic	(TTC)n|Simple_repeat|Simple_repeat	8389.0	NM_019910	13184.0	Mm.371556	NM_019910	ENSMUSG00000096445	Dcpp1	BC005655|C86550|Dcpp|Dcpp-1|p20	demilune cell and parotid protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-65475910-4	chr7	65475825	65476025	+	968.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	-104681.0	NM_009386	21872.0	Mm.4342	NM_009386	ENSMUSG00000030516	Tjp1	ZO1	tight junction protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-24499673-2	chr13	24499573	24499773	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-82516.0	NM_001286100	193385.0	Mm.217319	NM_029679	ENSMUSG00000036006	Ripor2	Fam65b	RHO family interacting cell polarization regulator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-11168189-3	chr8	11168075	11168275	+	781.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT2B4|LTR|ERVL	-144630.0	NM_009932	12827.0	Mm.181021	NM_009932	ENSMUSG00000031503	Col4a2	Col4a-2	collagen, type IV, alpha 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-67220940-2	chr7	67220840	67221040	+	904.583374	f1_balb.idr|f1_c57bl6.idr	intron (NR_131044, intron 1 of 2)	intron (NR_131044, intron 1 of 2)	1518.0	NR_131044	76628.0	Mm.384589	NR_131043	ENSMUSG00000097527	1700112J16Rik	-	RIKEN cDNA 1700112J16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99229843-2	chr7	99229743	99229943	+	703.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_177448, intron 2 of 5)	intron (NM_177448, intron 2 of 5)	8768.0	NM_177448	233549.0	Mm.208030	NM_177448	ENSMUSG00000052396	Mogat2	DGAT2L5|MGAT2|Mgat1l	monoacylglycerol O-acyltransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-24225001-3	chr19	24224931	24225131	+	726.655579	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360392)	promoter-TSS (NM_001360392)	97.0	NM_011597	21873.0	Mm.104744	NM_011597	ENSMUSG00000024812	Tjp2	ZO-2	tight junction protein 2	protein-coding	0.758568405546035	1.41051934765671	1.81542672740982	1.55737991531835	0.761847825845372	1.80677687938058	1.2103292027325	0.782531067899057	-0.759921086586093	0.595072301527106	0.971032388302052
Merged-chr11-100317939-2	chr11	100317839	100318039	+	928.6999509999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2010.0	NM_011508	20918.0	Mm.13886	NM_011508	ENSMUSG00000035530	Eif1	Sui1-rs1	eukaryotic translation initiation factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-8442239-2	chr15	8442139	8442339	+	693.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_201232, intron 1 of 45)	intron (NM_201232, intron 1 of 45)	2224.0	NM_027707	71175.0	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	NIPBL cohesin loading factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35777229-4	chr17	35777077	35777277	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045459, exon 2 of 3)	non-coding (NR_045459, exon 2 of 3)	4727.0	NR_045459	74601.0	Mm.410840	NR_045459	ENSMUSG00000092171	4833427F10Rik	-	RIKEN cDNA 4833427F10 gene	ncRNA	-0.846390191011184	-0.831819789139191	0.193351182241113	-0.84020487638748	-0.84545812403323	-0.830604595290638	-0.835538330417158	-0.839564684224917	-3.95723586738745	0.142861010112219	1
Merged-chr13-60702817-2	chr13	60702717	60702917	+	774.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 3 of 26)	intron (NM_134062, intron 3 of 26)	83547.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-34779453-4	chr18	34779364	34779564	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081256, intron 1 of 23)	intron (NM_001081256, intron 1 of 23)	2456.0	NM_001081256	277250.0	Mm.277906	NM_029518	ENSMUSG00000038773	Kdm3b	5830462I21Rik|JHDM2B|Jmjd1b|mKIAA1082	KDM3B lysine (K)-specific demethylase 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-29264119-4	chr17	29263997	29264197	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026845)	promoter-TSS (NM_026845)	-126.0	NM_026845	68816.0	Mm.328928	NM_026845	ENSMUSG00000024007	Ppil1	1110060O10Rik|AI327391|Cypl1	peptidylprolyl isomerase (cyclophilin)-like 1	protein-coding	4.13345801186328	2.98583452477719	4.21296322885118	4.15307549701104	4.32110373524394	2.66713782200741	3.81660119152432	3.46571000689351	-0.353539520134434	0.526555082674279	0.94877971795044
Merged-chr15-67907253-4	chr15	67907124	67907324	+	665.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	351632.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-136458680-4	chr5	136458573	136458773	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291238, intron 2 of 22)	intron (NM_001291238, intron 2 of 22)	-82870.0	NR_030500	723975.0		NR_030500	ENSMUSG00000106479	Mir721	Mirn721|miRY|mir-721|mmu-mir-721	microRNA 721	ncRNA	5.289663087734	5.07335118245175	4.8814485836484	5.64897194702513	4.48534319066179	4.69599145356732	2.92615321333929	4.69672793223224	-1.0811082134658	0.00821881193372397	0.0945741421810935
Merged-chr2-68872626-2	chr2	68872526	68872726	+	607.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347161, intron 1 of 10)	intron (NM_001347161, intron 1 of 10)	11185.0	NM_001347161	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-40626870-2	chr19	40626770	40626970	+	814.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001304721, intron 1 of 9)	intron (NM_001304721, intron 1 of 9)	14504.0	NM_001304721	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-156593506-4	chr1	156593407	156593607	+	966.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001136104, intron 1 of 12)	intron (NM_001136104, intron 1 of 12)	34720.0	NM_001136104	11352.0	Mm.329515	NM_009595	ENSMUSG00000026596	Abl2	AA536808|Abll|Arg	v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-28292863-4	chr6	28292772	28292972	+	968.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31271.0	NM_001081678	627049.0	Mm.84441	NM_001081678	ENSMUSG00000039841	Zfp800	AA407452|Znf800	zinc finger protein 800	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-124424174-4	chr9	124424084	124424284	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_027950, exon 2 of 2)	non-coding (NR_027950, exon 2 of 2)	397.0	NR_015516	75135.0	Mm.476814	NR_015516		4930526I15Rik	1600027J15Rik	RIKEN cDNA 4930526I15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-112786387-4	chr13	112786291	112786491	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	-14386.0	NM_008903	19012.0	Mm.291029	NM_008247	ENSMUSG00000021759	Plpp1	Hic53|Hpic53|LPP-1|LPP1|PAP-2a|PAP2-alpha|PAP2a|Ppap2a|mPAP	phospholipid phosphatase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-66791983-4	chr14	66791862	66792062	+	956.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	76638.0	NM_009955	12934.0	Mm.352648	NM_009955	ENSMUSG00000022048	Dpysl2	AI851130|Crmp2|DRP2|Musunc33|TOAD-64|Ulip2	dihydropyrimidinase-like 2	protein-coding	-1.84446540621454	-1.66703209084435	-1.82297003008319	-1.83062437091832	-1.84230234211872	-1.6650127732569	-1.82086056797065	-1.82925424756847	0.037684011990387	0.991491645451152	1
Merged-chr12-11979842-1	chr12	11979742	11979942	+	540.0	f0_balb.idr	Intergenic	Intergenic	-96943.0	NR_003964	627110.0	Mm.194735	NR_003964		Tubb2a-ps2	C79445	tubulin, beta 2a, pseudogene 2	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-49195753-1	chr13	49195653	49195853	+	556.0	f0_balb.idr	3' UTR (NM_013610, exon 4 of 4)	3' UTR (NM_013610, exon 4 of 4)	8206.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-87885010-2	chr3	87884936	87885136	+	959.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_033573, exon 1 of 7)	exon (NM_033573, exon 1 of 7)	526.0	NM_033573	94315.0	Mm.35089	NM_033573	ENSMUSG00000004895	Prcc	-	papillary renal cell carcinoma (translocation-associated)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-47319024-1	chr4	47318924	47319124	+	632.333313	f0_balb.idr	Intergenic	LTR16C|LTR|ERVL	-34198.0	NM_001312868	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-108332588-2	chr10	108332488	108332688	+	697.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_054056, intron 1 of 6)	CpG	399.0	NM_054056	114774.0	Mm.391419	NM_054056	ENSMUSG00000035873	Pawr	2310001G03Rik|PAR4|Par-4	PRKC, apoptosis, WT1, regulator	protein-coding	-1.50595015592756	-1.47350828872742	-1.32895206006278	-1.49137776871011	-1.50367279683513	-1.47138227162179	-1.17236421817108	-1.48993524887237	0.87905007711136	0.800098370502509	1
Merged-chr1-60015619-2	chr1	60015519	60015719	+	760.75	f0_balb.idr|f1_balb.idr	intron (NM_001357296, intron 4 of 10)	A-rich|Low_complexity|Low_complexity	27503.0	NM_001357296	70375.0	Mm.17834	NM_027407	ENSMUSG00000026018	Ica1l	1700030B17Rik|Als2cr15|b2b3465Clo	islet cell autoantigen 1-like	protein-coding	3.17830728959516	3.98469540706188	3.54812429869584	2.92317289787293	4.07549704416726	4.51979062782477	4.01463934234111	3.46487382046687	0.872655953161346	0.0933003795046935	0.473260126816789
Merged-chr12-25091956-1	chr12	25091856	25092056	+	955.0	f0_balb.idr	Intergenic	URR1A|DNA|hAT-Charlie	4136.0	NM_010496	15902.0	Mm.34871	NM_010496	ENSMUSG00000020644	Id2	AI255428|C78922|Idb2|bHLHb26	inhibitor of DNA binding 2	protein-coding	2.51340064043626	1.74867033889069	1.42946404265738	2.65083959009786	2.43939350818676	2.94200039935106	2.75002762627644	3.06183224687779	1.28084834866121	0.12936836813849	0.563193643296662
Merged-chr12-112610727-2	chr12	112610627	112610827	+	577.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_198411, exon 20 of 23)	exon (NM_198411, exon 20 of 23)	-9320.0	NM_007421	11565.0	Mm.3440	NM_007421	ENSMUSG00000011148	Adssl1	AI528595|Adss|Adss1	adenylosuccinate synthetase like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-39137610-4	chr18	39137504	39137704	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361073, intron 10 of 21)	intron (NM_001361073, intron 10 of 21)	144459.0	NM_175164	71302.0	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-61077359-3	chr18	61077267	61077467	+	873.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008809, intron 15 of 22)	intron (NM_008809, intron 15 of 22)	-28205.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-77035936-2	chr10	77035836	77036036	+	902.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_031196, intron 1 of 5)	intron (NM_031196, intron 1 of 5)	2724.0	NM_031196	20509.0	Mm.265060	NM_031196	ENSMUSG00000001436	Slc19a1	AI323572|RFC|RFC-1|RFC1	solute carrier family 19 (folate transporter), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-136218156-4	chr5	136218055	136218255	+	939.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001302938)	TTS (NM_001302938)	-19201.0	NM_025774	66801.0	Mm.425295	NM_025774	ENSMUSG00000039737	Prkrip1	8430424D23Rik|C114	Prkr interacting protein 1 (IL11 inducible)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69262605-2	chr11	69262505	69262705	+	576.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25583.0	NM_008192	14919.0	Mm.291816	NM_008192	ENSMUSG00000020890	Gucy2e	GC-E|GC1|ROS-GC1	guanylate cyclase 2e	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-22384086-4	chr4	22383983	22384183	+	802.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172988, intron 3 of 8)	Lx7|LINE|L1	26540.0	NR_104380	269514.0	Mm.40708	NM_172988	ENSMUSG00000040410	Fbxl4	AI836810|FBL4|FBL5	F-box and leucine-rich repeat protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-41842133-4	chr15	41841986	41842186	+	673.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152565, intron 12 of 17)	intron (NR_152565, intron 12 of 17)	11128.0	NM_001130164	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-105056272-4	chr5	105056158	105056358	+	923.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	-2697.0	NM_029509	76074.0	Mm.458519	NM_029509	ENSMUSG00000034438	Gbp8	5830443L24Rik|mGBP8	guanylate-binding protein 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-36966945-2	chr10	36966845	36967045	+	576.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7599.0	NM_008229	15182.0	Mm.19806	NM_008229	ENSMUSG00000019777	Hdac2	D10Wsu179e|YAF1|Yy1bp|mRPD3	histone deacetylase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-77028788-3	chr11	77028684	77028884	+	872.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010484, intron 13 of 13)	intron (NM_010484, intron 13 of 13)	30187.0	NM_010484	15567.0	Mm.300318	NM_010484	ENSMUSG00000020838	Slc6a4	5-HTT|AI323329|Htt|Sert	solute carrier family 6 (neurotransmitter transporter, serotonin), member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85519748-4	chr12	85519653	85519853	+	986.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45863.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-47651006-1	chr19	47650906	47651106	+	607.0	f0_balb.idr	intron (NM_007732, intron 45 of 52)	intron (NM_007732, intron 45 of 52)	41036.0	NM_007732	12821.0	Mm.1225	NM_007732	ENSMUSG00000025064	Col17a1	BP180|Bpag|Bpag2	collagen, type XVII, alpha 1	protein-coding	1.74416606228671	2.84869701174692	1.22532459103387	1.70302570797108	2.42451707230127	1.24557544881107	1.42664303692807	1.84575930533806	-0.71290803080349	0.541891162321342	0.954866069207078
Merged-chr15-97871741-2	chr15	97871641	97871841	+	552.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009504, intron 4 of 9)	intron (NM_009504, intron 4 of 9)	-27239.0	NM_001204278	56233.0	Mm.384027	NM_019572	ENSMUSG00000022475	Hdac7	5830434K02Rik|HD7|HD7a|Hdac7a|mFLJ00062	histone deacetylase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26640884-2	chr17	26640784	26640984	+	607.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026170, intron 8 of 9)	intron (NM_026170, intron 8 of 9)	-35512.0	NM_025272	11974.0	Mm.22602	NM_025272	ENSMUSG00000015575	Atp6v0e	Atp6k|Atp6v0e1|M9.2	ATPase, H+ transporting, lysosomal V0 subunit E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-107344011-2	chr11	107343911	107344111	+	922.333374	f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 1 of 9)	intron (NR_153311, intron 1 of 9)	126709.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-173388414-1	chr2	173388314	173388514	+	556.0	f0_balb.idr	Intergenic	Intergenic	-111881.0	NM_022995	65112.0	Mm.73682	NM_022995	ENSMUSG00000038400	Pmepa1	2210418I02Rik|AW455466|Erg1.2|N4wbp4|Stag1|Tmepai	prostate transmembrane protein, androgen induced 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-5715631-2	chr13	5715531	5715731	+	585.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	142461.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-121071614-2	chr7	121071514	121071714	+	805.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030691, intron 1 of 5)	intron (NM_030691, intron 1 of 5)	2916.0	NM_030691	80719.0	Mm.160384	NM_030691	ENSMUSG00000035004	Igsf6	-	immunoglobulin superfamily, member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16298673-2	chr7	16298573	16298773	+	701.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10910.0	NM_133234	170770.0	Mm.7660	NM_133234	ENSMUSG00000002083	Bbc3	PUMA|PUMA/JFY1	BCL2 binding component 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-28466393-3	chr2	28466317	28466517	+	845.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027040)	promoter-TSS (NM_027040)	-93.0	NM_027040	69327.0	Mm.46470	NM_027040	ENSMUSG00000026831	1700007K13Rik	Rbest47	RIKEN cDNA 1700007K13 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-82005958-2	chr11	82005858	82006058	+	727.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29619.0	NM_011333	20296.0	Mm.290320	NM_011333	ENSMUSG00000035385	Ccl2	AI323594|HC11|JE|MCAF|MCP-1|MCP1|SMC-CF|Scya2|Sigje	chemokine (C-C motif) ligand 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-87620385-4	chr1	87620296	87620496	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010566)	promoter-TSS (NM_010566)	84.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-154842487-3	chr3	154842411	154842611	+	851.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177066, intron 21 of 24)	intron (NM_177066, intron 21 of 24)	131378.0	NM_175176	209601.0	Mm.331454	NM_175176	ENSMUSG00000078161	Erich3	1700013E18Rik|4922501L14Rik|5031409G23Rik|AI596448|Gm133	glutamate rich 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-8803263-2	chr17	8803163	8803363	+	669.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011866, intron 1 of 21)	intron (NM_011866, intron 1 of 21)	1518.0	NM_011866	23984.0	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-92719114-2	chr16	92719014	92719214	+	555.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111022, intron 2 of 6)	intron (NM_001111022, intron 2 of 6)	-21785.0	NM_009821	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-78887198-4	chr11	78887079	78887279	+	988.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33608.0	NM_010927	18126.0	Mm.2893	NM_010927	ENSMUSG00000020826	Nos2	MAC-NOS|NOS-II|Nos-2|Nos2a|i-NOS|iNOS	nitric oxide synthase 2, inducible	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-78422809-2	chr10	78422709	78422909	+	669.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-2861.0	NM_007793	13014.0	Mm.6095	NM_007793	ENSMUSG00000005054	Cstb	AA960480|Stfb	cystatin B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-146825137-1	chr5	146825037	146825237	+	679.0	f1_c57bl6.idr	Intergenic	Intergenic	-7753.0	NM_019647	19933.0	Mm.316592	NM_019647	ENSMUSG00000041453	Rpl21	8430440E03Rik|L21	ribosomal protein L21	protein-coding	2.12403785698707	2.26448568992307	2.66858298161877	1.28426269297386	1.78770732496818	2.14628912524334	2.20538564117102	2.249524879251	-0.191163824050471	0.841298706761577	0.998431161219273
Merged-chr7-81200633-2	chr7	81200533	81200733	+	829.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13171.0	NM_008803	18584.0	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	0.254485317194321	0.484336917274183	0.270378755741952	0.83170092895105	0.255970781512918	1.05181465502034	0.272073264370831	0.839075191074041	0.99054604307615	0.605085450631207	1
Merged-chr3-137833306-4	chr3	137833204	137833404	+	983.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31183.0	NM_001316995	51788.0	Mm.117541	NM_016750	ENSMUSG00000037894	H2afz	H2A.Z|H2a.z-1	H2A histone family, member Z	protein-coding	1.93793924845116	1.35171897967084	2.80414961512634	1.72957674464674	2.60630143780937	2.56458811291658	2.11732703827579	2.18097807390618	0.68276845358971	0.466417307249482	0.922971992343415
Merged-chr7-89908141-2	chr7	89908041	89908241	+	795.1999509999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4512.0	NM_001162979	70884.0	Mm.252823	NM_001162979	ENSMUSG00000039391	Ccdc81	4921513D09Rik	coiled-coil domain containing 81	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-112100852-3	chr13	112100765	112100965	+	842.644409	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-187586.0	NM_001168403	77318.0	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-37186308-3	chr11	37186212	37186412	+	855.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-242071.0	NM_011856	23964.0	Mm.439889	NM_011856	ENSMUSG00000049336	Tenm2	Odz2|Odz3|Ten-2|Ten-m2	teneurin transmembrane protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-50892146-2	chr15	50892046	50892246	+	626.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2105.0	NM_032000	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-119691308-2	chr13	119691208	119691408	+	769.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291439, intron 1 of 9)	intron (NM_001291439, intron 1 of 9)	957.0	NM_001291439	208715.0	Mm.61526	NM_145942	ENSMUSG00000093930	Hmgcs1	B130032C06Rik	3-hydroxy-3-methylglutaryl-Coenzyme A synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-3644799-2	chr8	3644699	3644899	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_011503)	TTS (NM_011503)	-10971.0	NM_001204959	57264.0	Mm.1181	NM_022984	ENSMUSG00000012705	Retn	ADSF|Fizz3|Rstn|Xcp4	resistin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-29818929-4	chr7	29818802	29819002	+	938.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145880, intron 1 of 4)	intron (NM_001145880, intron 1 of 4)	2830.0	NM_001145880	233056.0	Mm.224766	NM_146185	ENSMUSG00000011427	Zfp790	6330581L23Rik	zinc finger protein 790	protein-coding	1.1678304019637	0.865576767329663	1.69463168052905	0.832450541414884	1.9809757004988	0.869670258411618	2.09838107145208	1.39468201852023	1.61158399120213	0.233402983477472	0.728756678286618
Merged-chr2-6179927-4	chr2	6179818	6180018	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-13333.0	NR_040333	320132.0	Mm.445891	NR_040333	ENSMUSG00000087125	A230108P19Rik	-	RIKEN cDNA A230108P19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-118567388-4	chr2	118567270	118567470	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17684.0	NM_138313	171543.0	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	1.49938330099635	1.68185952588706	1.05065358948872	2.11600214170369	1.37059881920005	1.32309348401977	1.77679164853241	2.28382921282248	0.318217547347755	0.780063384233137	0.998431161219273
Merged-chr5-124493641-4	chr5	124493590	124493790	+	972.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_021430, exon 7 of 7)	3' UTR (NM_021430, exon 7 of 7)	10535.0	NM_029532	76167.0	Mm.156035	NM_029532	ENSMUSG00000029402	Snrnp35	6330548G22Rik	small nuclear ribonucleoprotein 35 (U11/U12)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-139074091-3	chr3	139074002	139074202	+	842.2000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356388, intron 1 of 13)	intron (NM_001356388, intron 1 of 13)	1099.0	NM_145544	229877.0	Mm.28893	NM_145544	ENSMUSG00000028149	Rap1gds1	BC011279|GDS1	RAP1, GTP-GDP dissociation stimulator 1	protein-coding	-1.13129152895393	-0.760314410582534	-1.11939102144509	-1.12796902636669	-1.1307976245896	-0.753160406462703	-1.11683883442949	-1.12699414366937	0.0387695613834025	0.99058038935327	1
Merged-chr9-67838935-3	chr9	67838832	67839032	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR49|LTR|ERVK	-1464.0	NM_177184	320528.0	Mm.241454	NM_177184	ENSMUSG00000035284	Vps13c	AI552542|AV026040|C230055H22Rik|W51662|chorein	vacuolar protein sorting 13C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-114635378-2	chr13	114635278	114635478	+	565.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045976, intron 3 of 6)	intron (NR_045976, intron 3 of 6)	28150.0	NR_045976	75161.0	Mm.50406	NM_175218	ENSMUSG00000051758	4930544M13Rik	-	RIKEN cDNA 4930544M13 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-37077465-4	chr11	37077350	37077550	+	942.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-133209.0	NM_011856	23964.0	Mm.439889	NM_011856	ENSMUSG00000049336	Tenm2	Odz2|Odz3|Ten-2|Ten-m2	teneurin transmembrane protein 2	protein-coding	1.092382619616	1.3773248771368	1.32654885729092	0.988337866638663	0.781430149476774	1.23238909806747	1.19076355756357	1.86877636072372	0.540999239871549	0.678873223081915	0.99525161242239
Merged-chr10-66860549-2	chr10	66860449	66860649	+	567.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	59835.0	NR_138560	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-59246304-3	chr2	59246191	59246391	+	930.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 2 of 20)	URR1B|DNA|hAT-Charlie	85441.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-135168182-4	chr6	135168083	135168283	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013546)	promoter-TSS (NM_013546)	32.0	NM_013546	15199.0	Mm.378937	NM_013546	ENSMUSG00000042770	Hebp1	Hebp|p22HBP	heme binding protein 1	protein-coding	4.7994837517239	4.87961008849998	5.08472371037055	5.46723238502545	4.66160849927598	4.20663776230929	5.21949846766136	4.20786720288439	-0.53346224688788	0.147910871547565	0.598191450616072
Merged-chr5-20950438-2	chr5	20950338	20950538	+	939.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_030699)	promoter-TSS (NR_030699)	-551.0	NR_030699	320770.0	Mm.491217	NR_030699	ENSMUSG00000101013	A630072M18Rik	Aptr	RIKEN cDNA A630072M18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-33284614-4	chr4	33284491	33284691	+	886.3095089999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25720.0	NM_011884	24018.0	Mm.240024	NM_011884	ENSMUSG00000028274	Rngtt	AU020997|HCE|MCE1	RNA guanylyltransferase and 5'-phosphatase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-130911741-2	chr4	130911641	130911841	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-1593.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4630777-3	chr16	4630695	4630895	+	872.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030205, intron 21 of 27)	intron (NM_030205, intron 21 of 27)	-5849.0	NM_025571	66449.0	Mm.354760	NM_025571	ENSMUSG00000014301	Pam16	2010110I09Rik|AV006767|CGI-136|Magmas|Tim16|Timm16	presequence translocase-asssociated motor 16 homolog (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-90720489-2	chr6	90720389	90720589	+	769.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356440, intron 1 of 13)	intron (NM_001356440, intron 1 of 13)	-3960.0	NM_001134383	232227.0	Mm.196943	NM_182784	ENSMUSG00000034312	Iqsec1	AW561907|BC026481|BRAG2|D6Ertd349e|cI-43	IQ motif and Sec7 domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-107103117-2	chr3	107103024	107103224	+	934.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_008417, intron 1 of 2)	intron (NM_008417, intron 1 of 2)	1557.0	NM_008417	16490.0	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	-0.293532810771738	-0.623768004759424	-0.466266737396103	-0.353426676675666	-0.631781703565258	-0.623129082869572	-0.625968644132289	-0.477972631226108	-2.13325945072895	0.401642735910103	1
Merged-chr6-40435246-3	chr6	40435229	40435429	+	986.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356375, intron 1 of 8)	CpG	806.0	NM_001356375	243780.0	Mm.333006	NM_175528	ENSMUSG00000037172	E330009J07Rik	AI841796|Lchn|mKIAA1147	RIKEN cDNA E330009J07 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-134883414-2	chr4	134883314	134883514	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011270, intron 3 of 9)	L2|LINE|L2	18878.0	NM_011270	19746.0	Mm.195461	NM_011270	ENSMUSG00000028825	Rhd	Rh|Rhced|Rhl1	Rh blood group, D antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-69455660-2	chr9	69455560	69455760	+	770.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007585, intron 1 of 12)	intron (NM_007585, intron 1 of 12)	-1284.0	NR_037296	100526560.0		NR_037296	ENSMUSG00000093042	Mir3109	mir-3109|mmu-mir-3109	microRNA 3109	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-88528011-3	chr17	88527908	88528108	+	865.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2116.0	NM_028658	73825.0	Mm.271817	NM_028658	ENSMUSG00000034709	Ppp1r21	1110018J12Rik|AI426045|AW550781|Ccdc128|Klraq1	protein phosphatase 1, regulatory subunit 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-30602476-4	chr3	30602379	30602579	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_030557, exon 1 of 8)	5' UTR (NM_030557, exon 1 of 8)	392.0	NM_001289622	80732.0	Mm.200378	NM_030557	ENSMUSG00000037730	Mynn	2810011C24Rik|AA415053|AI661031|AW049392|Mynr|SBBIZ1	myoneurin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128389745-2	chr10	128389645	128389845	+	769.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_105880)	TTS (NR_105880)	913.0	NR_105880	102465979.0		NR_105880	ENSMUSG00000106600	Mir6915	mmu-mir-6915	microRNA 6915	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-83932674-3	chr18	83932560	83932760	+	921.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	153902.0	NM_001081300	110796.0	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-66553874-2	chr12	66553774	66553974	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001193266, intron 9 of 16)	intron (NM_001193266, intron 9 of 16)	-269473.0	NM_001162933	238217.0	Mm.188575	NM_001162933	ENSMUSG00000060499	Rpl10l	EG238217	ribosomal protein L10-like	protein-coding	-1.3681463318974	-1.33624156493372	-1.34650167276047	-0.80669348975676	-1.36769697821496	-1.33401815676661	-1.34417900924365	-1.3534210303531	-2.3580830592467	0.49586638340111	1
Merged-chr14-30875691-2	chr14	30875591	30875791	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028839, exon 8 of 8)	3' UTR (NM_028839, exon 8 of 8)	-3566.0	NM_181390	66175.0	Mm.220895	NM_181390	ENSMUSG00000042485	Mustn1	1110028G01Rik|Mustang	musculoskeletal, embryonic nuclear protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-74564499-3	chr13	74564406	74564606	+	775.200012	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70556.0	NM_146231	235956.0		NM_146231	ENSMUSG00000069208	Zfp825	-	zinc finger protein 825	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-46404292-2	chr18	46404192	46404392	+	776.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61524.0	NR_045438	72076.0	Mm.82766	NM_028086		Mospd4	2010013H21Rik	motile sperm domain containing 4	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96811420-2	chr3	96811328	96811528	+	622.5	f0_balb.idr|f0_c57.idr	intron (NM_001163497, intron 1 of 3)	ORR1E|LTR|ERVL-MaLR	3093.0	NM_018767	54215.0	Mm.34693	NM_018767	ENSMUSG00000038304	Cd160	AU045688|By55	CD160 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111165303-4	chr12	111165197	111165397	+	911.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_130987, intron 2 of 3)	intron (NR_130987, intron 2 of 3)	-1073.0	NM_001286122	22031.0	Mm.27431	NM_011632	ENSMUSG00000021277	Traf3	AI528849|CAP-1|CD40bp|CRAF1|LAP1|T-BAM|amn	TNF receptor-associated factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-113748312-4	chr6	113748114	113748314	+	942.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001347365, exon 24 of 24)	3' UTR (NM_001347365, exon 24 of 24)	-7533.0	NM_024206	110379.0	Mm.29296	NM_024206	ENSMUSG00000030298	Sec13	1110003H02Rik|Sec13l1|Sec13r	SEC13 homolog, nuclear pore and COPII coat complex component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3801828-2	chr4	3801745	3801945	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17B|LTR|ERVK	33810.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-60688844-2	chr14	60688744	60688944	+	790.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033272, intron 1 of 12)	intron (NM_001033272, intron 1 of 12)	-44060.0	NM_001310594	219140.0	Mm.149776	NM_001033272	ENSMUSG00000021990	Spata13	C79050|ESTM11|X83327|mFLJ00298	spermatogenesis associated 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-96235113-2	chr11	96235013	96235213	+	696.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16547.0	NR_037977	193022.0	Mm.169508	NR_037977		Gm53	-	predicted gene 53	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-32610306-4	chr5	32610219	32610419	+	897.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001205133)	promoter-TSS (NM_001205133)	-852.0	NM_001205133	22612.0	Mm.4558	NM_009535	ENSMUSG00000014932	Yes1	Yes|p61-Yes	YES proto-oncogene 1, Src family tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-103655900-2	chr5	103655800	103656000	+	784.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163550)	promoter-TSS (NM_001163550)	-168.0	NM_001163550	74218.0	Mm.159141	NM_028824	ENSMUSG00000029320	1700016H13Rik	-	RIKEN cDNA 1700016H13 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-139069-1	chr1	138969	139169	+	795.0	f1_c57bl6.idr	Intergenic	Intergenic	3532429.0	NM_001011874	497097.0	Mm.454496	NM_001011874	ENSMUSG00000051951	Xkr4	AY534250|Gm210|XRG4|mKIAA1889	X-linked Kx blood group related 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-42331314-4	chr13	42331225	42331425	+	892.133301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29849.0	NM_010104	13614.0	Mm.14543	NM_010104	ENSMUSG00000021367	Edn1	ET-1|PPET1|preproET	endothelin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-10745282-3	chr17	10745179	10745379	+	655.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027032, intron 2 of 4)	intron (NM_027032, intron 2 of 4)	94912.0	NM_027032	69310.0	Mm.18889	NM_027032	ENSMUSG00000037196	Pacrg	1700008H23Rik	PARK2 co-regulated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-115738712-8	chr4	115738585	115738785	+	923.59375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172698, exon 1 of 12)	exon (NM_172698, exon 1 of 12)	612.0	NM_172698	230648.0	Mm.283565	NM_172698	ENSMUSG00000034210	Efcab14	4732418C07Rik	EF-hand calcium binding domain 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-58449722-2	chr3	58449622	58449822	+	782.116699	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081229, intron 2 of 3)	intron (NM_001081229, intron 2 of 3)	35002.0	NM_001347233	72033.0	Mm.218409	NM_001081229	ENSMUSG00000027806	Tsc22d2	1810043J12Rik|5530402M19Rik	TSC22 domain family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128191422-2	chr10	128191322	128191522	+	838.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3213.0	NM_001285777	216456.0	Mm.30102	NM_001033264	ENSMUSG00000044005	Gls2	A330074B06Rik|AI195532|GA|GLS|Lga	glutaminase 2 (liver, mitochondrial)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-25759842-4	chr14	25759733	25759933	+	950.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001101433, intron 1 of 3)	intron (NM_001101433, intron 1 of 3)	9023.0	NM_001101433	71918.0	Mm.41904	NM_001101433	ENSMUSG00000055538	Zcchc24	2310047A01Rik	zinc finger, CCHC domain containing 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-45301858-2	chr9	45301758	45301958	+	592.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C|LTR|ERVK	-17242.0	NM_001013373	214531.0	Mm.394987	NM_001013373	ENSMUSG00000037129	Tmprss13	BC010843|Tpmrss13	transmembrane protease, serine 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-7914240-2	chr17	7914140	7914340	+	861.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11760.0	NM_145968	72536.0	Mm.119680	NM_145968	ENSMUSG00000033450	Tagap	2610315E15Rik|TRD|Tcd-1|Tcd1|Tcd1a|tcs-1|tcs1	T cell activation Rho GTPase activating protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55761852-2	chr14	55761752	55761952	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_020490, intron 1 of 1)	intron (NM_020490, intron 1 of 1)	424.0	NM_020490	57260.0	Mm.159670	NM_020490	ENSMUSG00000040432	Ltb4r2	5830462O07Rik|BLT2|LTB4-R 2|LTB4-R-2|LTB4-R2	leukotriene B4 receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-34878804-4	chr8	34878685	34878885	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175091, intron 5 of 26)	intron (NM_175091, intron 5 of 26)	71175.0	NM_176933	319520.0	Mm.170276	NM_176933	ENSMUSG00000031530	Dusp4	2700078F24Rik|AI844617|BB104621|E130306H24Rik|MKP2	dual specificity phosphatase 4	protein-coding	5.35118793251092	4.40593323396821	4.74882264841454	5.44601765067008	5.73320912452305	3.76718577816767	4.99492006835118	5.07147218867758	0.0101239257293905	0.980461843766305	0.998431161219273
Merged-chr7-49396630-1	chr7	49396530	49396730	+	967.0	f0_c57.idr	intron (NM_175272, intron 3 of 37)	B2_Mm2|SINE|B2	150441.0	NM_175272	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-13269236-5	chr12	13269147	13269347	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027706, exon 1 of 52)	exon (NM_027706, exon 1 of 52)	120.0	NM_027706	71169.0	Mm.177520	NM_027706	ENSMUSG00000020576	Nbas	4933425L03Rik|Nag	neuroblastoma amplified sequence	protein-coding	4.45119491380842	3.90099683716504	5.255261111257	3.36664612990182	3.96475070326918	3.8401747070388	5.77168779959462	3.67047256975151	0.253070890459496	0.655487949013586	0.98843657332731
Merged-chr10-122007899-4	chr10	122007789	122007989	+	938.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081037, intron 1 of 21)	intron (NM_001081037, intron 1 of 21)	39426.0	NM_001242411	117600.0	Mm.288698	NM_001081037	ENSMUSG00000020121	Srgap1	4930572H05Rik|Arhgap13	SLIT-ROBO Rho GTPase activating protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-115835717-4	chr4	115835601	115835801	+	960.2291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_175308, exon 4 of 4)	3' UTR (NM_175308, exon 4 of 4)	-3497.0	NM_001285488	17346.0	Mm.209327	NM_021461	ENSMUSG00000028708	Mknk1	2410048M24Rik|Mnk1	MAP kinase-interacting serine/threonine kinase 1	protein-coding	0.908616235555779	2.36225644222657	1.73700291533477	1.6820123251399	0.913699592689742	1.82069703173946	0.966552646925465	2.29267931729013	-0.348912836149692	0.787481226703254	0.998431161219273
Merged-chr12-112802202-2	chr12	112802102	112802302	+	664.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6773.0	NM_145450	217887.0	Mm.186678	NM_145450	ENSMUSG00000037594	BC022687	AW050009|C130001I08Rik|Clba1|Flj20080	cDNA sequence BC022687	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-32906997-4	chr19	32906876	32907076	+	831.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	149399.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	1.05800175002991	1.78200008797492	0.910516065104	1.76281415916132	1.06482160270444	1.79687281125522	1.13670944372802	1.77303376766738	0.153395496119168	0.902758870642547	0.998431161219273
Merged-chr9-44477904-4	chr9	44477774	44477974	+	902.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4951.0	NM_001357490	80288.0	Mm.370270	NM_030256	ENSMUSG00000063382	Bcl9l	B9L|BC003321|BCL9-2|DLNB11	B cell CLL/lymphoma 9-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-114821864-3	chr9	114821695	114821895	+	842.5714109999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027294, intron 1 of 3)	intron (NM_027294, intron 1 of 3)	22357.0	NM_027294	70031.0	Mm.150064	NM_027294	ENSMUSG00000041012	Cmtm8	2700018N07Rik|AA408515|Cklfsf8	CKLF-like MARVEL transmembrane domain containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-53428818-2	chr11	53428718	53428918	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001326614, exon 3 of 3)	3' UTR (NM_001326614, exon 3 of 3)	2013.0	NM_025352	22272.0	Mm.251621	NM_025352	ENSMUSG00000044894	Uqcrq	1100001F06Rik|1500040F11Rik|5830407L17Rik|9.5kDa|AA959903|QP-C|Qpc|Uqcrb|c1502	ubiquinol-cytochrome c reductase, complex III subunit VII	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-144699790-4	chr3	144699701	144699901	+	960.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019464, intron 5 of 8)	intron (NM_019464, intron 5 of 8)	20534.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78903435-4	chr15	78903345	78903545	+	868.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316685, intron 6 of 17)	intron (NM_001316685, intron 6 of 17)	3677.0	NM_009164	20401.0	Mm.4462	NM_009164	ENSMUSG00000022436	Sh3bp1	3BP-1	SH3-domain binding protein 1	protein-coding	3.07362789624092	2.8454648873305	3.07460489476954	3.50943289241509	2.27723215862816	1.65249756949642	3.19175045169501	3.79587537976005	-0.258802900984581	0.731920448629089	0.998431161219273
Merged-chr2-24948194-2	chr2	24948094	24948294	+	705.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	-1583.0	NM_026021	67187.0	Mm.296106	NM_026021	ENSMUSG00000026974	Zmynd19	2700064H14Rik|AA536891|AU014915|mizip	zinc finger, MYND domain containing 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-121452490-4	chr5	121452383	121452583	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026129)	promoter-TSS (NM_026129)	-9.0	NM_026129	67397.0	Mm.154570	NM_026129	ENSMUSG00000029616	Erp29	1200015M03Rik|2810446M09Rik|AW209030|Erp28|Erp31|PDI-Db	endoplasmic reticulum protein 29	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69066418-3	chr11	69066320	69066520	+	849.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-4389.0	NM_025838	66910.0	Mm.33964	NM_025838	ENSMUSG00000020895	Tmem107	1110004B13Rik|2810049P21Rik	transmembrane protein 107	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-30599622-4	chr16	30599467	30599667	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177632)	promoter-TSS (NM_177632)	-156.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107675371-1	chr9	107675271	107675471	+	713.0	f1_c57bl6.idr	3' UTR (NM_008140, exon 9 of 9)	3' UTR (NM_008140, exon 9 of 9)	4221.0	NM_008140	14685.0	Mm.284853	NM_008140	ENSMUSG00000034837	Gnat1	Gnat-1|Ird1|Ird2|Tralpha|irdc|irdr|transducin	guanine nucleotide binding protein, alpha transducing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-90432866-5	chr3	90432733	90432933	+	928.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_145540, exon 1 of 30)	exon (NM_145540, exon 1 of 30)	803.0	NM_145540	229543.0	Mm.268564	NM_145540	ENSMUSG00000027933	Ints3	C77668	integrator complex subunit 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-109908728-1	chr1	109908628	109908828	+	553.0	f1_c57bl6.idr	Intergenic	Lx3C|LINE|L1	-74172.0	NM_001316743	241201.0	Mm.213407	NM_172853	ENSMUSG00000026312	Cdh7	9330156F07Rik|CDH7L1	cadherin 7, type 2	protein-coding	-1.12007123334057	-1.23751541721827	-0.799610455274731	-1.25644006657821	-1.26447365240828	-1.23526386158843	-1.24555334641492	-1.25491236783429	-2.40709883940037	0.4691507995815	1
Merged-chr2-117945144-3	chr2	117945044	117945244	+	708.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_126479, intron 8 of 9)	intron (NR_126479, intron 8 of 9)	123216.0	NR_040631	73938.0	Mm.399107	NR_040631	ENSMUSG00000086221	4930412B13Rik	-	RIKEN cDNA 4930412B13 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-98499951-4	chr6	98499858	98500058	+	770.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-157204.0	NM_001128092	330390.0	Mm.484161	NM_001128092	ENSMUSG00000090667	Gm765	-	predicted gene 765	protein-coding	1.19392136961728	0.767352466546279	1.44410142296407	2.07364800126936	1.20509374494149	0.770762023885687	0.755426998298619	1.40422197619228	-1.47315502071786	0.299452936846335	0.800780758458171
Merged-chr8-122280707-3	chr8	122280524	122280724	+	771.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1517.0	NM_009569	22761.0	Mm.3105	NM_009569	ENSMUSG00000049577	Zfpm1	FOG|Fog1	zinc finger protein, multitype 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32689589-4	chr2	32689485	32689685	+	994.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010236, intron 4 of 14)	intron (NM_010236, intron 4 of 14)	-1819.0	NR_106168	102465885.0		NR_106168	ENSMUSG00000098972	Mir8093	Gm27548|mmu-mir-8093	microRNA 8093	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-84842999-4	chr3	84842895	84843095	+	985.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177773, intron 1 of 13)	RLTR31B2|LTR|ERVK	-21150.0	NM_001177774	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	1.63395089778465	1.82845663785468	1.76714881730968	1.45194954763609	1.75047520863109	1.12420100710364	1.64912661530808	2.0305642137032	0.0390468311993222	0.971549879295257	0.998431161219273
Merged-chr3-55357422-2	chr3	55357322	55357522	+	621.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357475, intron 3 of 16)	intron (NM_001357475, intron 3 of 16)	-104306.0	NM_001195539	13175.0	Mm.393242	NM_019978	ENSMUSG00000027797	Dclk1	1700113D08Rik|2810480F11Rik|AI836758|Click-I|Cpg16|Dcamkl1|Dcl|Dclk|mKIAA0369	doublecortin-like kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30473067-3	chr2	30473001	30473201	+	847.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_030244, exon 1 of 1)	exon (NM_030244, exon 1 of 1)	1098.0	NM_030244	72500.0	Mm.295464	NM_030244	ENSMUSG00000089762	Ier5l	2610524G09Rik	immediate early response 5-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-90714918-1	chr6	90714818	90715018	+	747.0	f0_balb.idr	intron (NM_001356440, intron 1 of 13)	intron (NM_001356440, intron 1 of 13)	1611.0	NM_001134383	232227.0	Mm.196943	NM_182784	ENSMUSG00000034312	Iqsec1	AW561907|BC026481|BRAG2|D6Ertd349e|cI-43	IQ motif and Sec7 domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-92499666-4	chr5	92499564	92499764	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007644, intron 1 of 11)	intron (NM_007644, intron 1 of 11)	5993.0	NM_007644	12492.0	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	1.2222585447228	1.08748935040449	3.14038415620794	2.16192883456005	1.23427280567977	1.09590232017181	3.16608867996696	2.17499303338732	0.0380525197432026	0.973790605295558	0.998431161219273
Merged-chr5-134237231-2	chr5	134237131	134237331	+	739.416626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001080749)	TTS (NM_001080749)	-7606.0	NR_104383	17969.0	Mm.425296	NM_010876	ENSMUSG00000015950	Ncf1	NCF-47K|NOXO2|Ncf-1|p47-phox|p47<phox>|p47phox	neutrophil cytosolic factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132463975-4	chr4	132463878	132464078	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026039)	promoter-TSS (NM_026039)	-57.0	NM_026039	67219.0	Mm.45929	NM_026039	ENSMUSG00000066042	Med18	2810046C01Rik	mediator complex subunit 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-35142082-1	chr7	35141982	35142182	+	780.0	f1_balb.idr	Intergenic	Intergenic	22789.0	NM_007678	12606.0	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-59235601-4	chr3	59235501	59235701	+	649.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177855, intron 19 of 43)	intron (NM_177855, intron 19 of 43)	-24719.0	NM_028808	74191.0	Mm.90067	NM_028808	ENSMUSG00000036362	P2ry13	2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174	purinergic receptor P2Y, G-protein coupled 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-120284245-1	chr14	120284145	120284345	+	541.0	f1_c57bl6.idr	intron (NM_001360380, intron 1 of 7)	intron (NM_001360380, intron 1 of 7)	8576.0	NM_001360380	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-126472059-2	chr2	126471959	126472159	+	713.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359975, intron 3 of 27)	intron (NM_001359975, intron 3 of 27)	19494.0	NM_001080944	241633.0	Mm.222235	NM_001080944	ENSMUSG00000060131	Atp8b4	Im	ATPase, class I, type 8B, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-90268862-2	chr3	90268762	90268962	+	966.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356483, intron 4 of 27)	intron (NM_001356483, intron 4 of 27)	-1287.0	NR_105979	102465612.0		NR_105979	ENSMUSG00000099199	Mir7012	Gm27370|mmu-mir-7012	microRNA 7012	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-121963704-2	chr10	121963604	121963804	+	819.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081037, intron 1 of 21)	intron (NM_001081037, intron 1 of 21)	83611.0	NM_001242411	117600.0	Mm.288698	NM_001081037	ENSMUSG00000020121	Srgap1	4930572H05Rik|Arhgap13	SLIT-ROBO Rho GTPase activating protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-46450410-2	chr3	46450310	46450510	+	976.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	-2469.0	NM_001101479	241989.0	Mm.119234	NM_001101479	ENSMUSG00000090919	Pabpc4l	C330050A14Rik|EG241989	poly(A) binding protein, cytoplasmic 4-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-42031252-4	chr10	42031136	42031336	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12854.0	NM_001034858	213402.0	Mm.211320	NM_001034858	ENSMUSG00000071324	Armc2	2610018I05Rik	armadillo repeat containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45338381-2	chr7	45338281	45338481	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_029741)	TTS (NM_029741)	3112.0	NM_010473	15464.0	Mm.39968	NM_010473	ENSMUSG00000038239	Hrc	-	histidine rich calcium binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-61122851-1	chr14	61122751	61122951	+	549.0	f1_balb.idr	Intergenic	Intergenic	-15606.0	NM_172809	50720.0	Mm.440703	NM_015788	ENSMUSG00000048279	Sacs	A230052M14|DNAJC29|E130115J16Rik	sacsin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45564303-2	chr7	45564203	45564403	+	621.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025330, intron 6 of 8)	B1_Mus1|SINE|Alu	-5850.0	NM_009737	12036.0	Mm.24210	NM_009737	ENSMUSG00000030826	Bcat2	Bcat(m)|Bcat-2|Eca40	branched chain aminotransferase 2, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-61432009-3	chr9	61431914	61432114	+	923.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	59648.0	NM_001083927	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150855840-3	chr4	150855754	150855954	+	719.888855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040649)	promoter-TSS (NR_040649)	784.0	NM_133753	74155.0	Mm.318841	NM_133753	ENSMUSG00000028967	Errfi1	1300002F13Rik|AI788755|Mig-6|Mig6|RALT	ERBB receptor feedback inhibitor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-44113846-3	chr4	44113737	44113937	+	792.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8056.0	NR_040414	623796.0	Mm.490409	NR_040414	ENSMUSG00000084274	Gm12504	-	prothymosin alpha pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84744771-2	chr8	84744671	84744871	+	630.116699	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081982, intron 2 of 9)	intron (NM_001081982, intron 2 of 9)	29598.0	NM_001081981	18032.0	Mm.9394	NM_010906	ENSMUSG00000001911	Nfix	CTF|NF-I/X|NF1-X|NFI-X	nuclear factor I/X	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-95895469-2	chr15	95895369	95895569	+	597.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 3 of 19)	Lx3C|LINE|L1	-65397.0	NR_155276	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-135249901-4	chr6	135249740	135249940	+	835.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080553, intron 1 of 5)	intron (NM_001080553, intron 1 of 5)	-1956.0	NM_001080552	14840.0	Mm.272306	NM_010352	ENSMUSG00000030206	Gsg1	-	germ cell associated 1	protein-coding	1.91170894335792	1.16840127268464	2.8793162319735	2.02442871009605	1.30693690666616	2.42699854850926	1.14421804160682	2.44835888728577	-0.388256145579846	0.727881387574613	0.998431161219273
Merged-chr19-4001334-2	chr19	4001234	4001434	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025529, intron 2 of 3)	intron (NM_025529, intron 2 of 3)	754.0	NM_025529	66387.0	Mm.259222	NM_025529	ENSMUSG00000110949	Nudt8	2310039H17Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180300469-4	chr1	180300380	180300580	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB5|LINE|L1	-29996.0	NM_001081175	320404.0	Mm.132535	NM_001081175	ENSMUSG00000038855	Itpkb	1110033J02Rik|E130307H12Rik	inositol 1,4,5-trisphosphate 3-kinase B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-24601131-4	chr7	24601044	24601244	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023154, intron 4 of 7)	intron (NM_023154, intron 4 of 7)	-10184.0	NM_001102613	232970.0	Mm.333663	NM_001102613	ENSMUSG00000074277	Phldb3	EG232970|Gm10102	pleckstrin homology like domain, family B, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-99361961-4	chr5	99361886	99362086	+	875.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-109059.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-163646457-2	chr2	163646357	163646557	+	876.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_028113)	TTS (NR_028113)	-1314.0	NM_012032	26943.0	Mm.218473	NM_012032	ENSMUSG00000017707	Serinc3	AA959945|AA960047|AIGP1|DIFF33|TMS-1|Tde1	serine incorporator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-33702378-4	chr17	33702256	33702456	+	958.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252480, intron 3 of 4)	B1F2|SINE|Alu	16321.0	NM_145486	224703.0	Mm.311439	NM_145486	ENSMUSG00000079557	March2	9530046H09Rik|MARCH-II	membrane-associated ring finger (C3HC4) 2	protein-coding	1.59141280170552	0.794676168775024	0.780928350007305	1.6934165395591	1.75574939585565	0.797745949575398	0.997028583949905	1.27926420300898	-0.100083446201646	0.945264951240456	0.998431161219273
Merged-chr11-115694198-4	chr11	115694108	115694308	+	896.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001313936, intron 2 of 5)	intron (NM_001313936, intron 2 of 5)	5326.0	NM_001313937	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-56770801-4	chr19	56770701	56770901	+	950.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42882.0	NM_170757	213993.0	Mm.469677	NM_170757	ENSMUSG00000035173	Ccdc186	1810028B20Rik|A630007B06Rik|AI159700|Otg1	coiled-coil domain containing 186	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-86888750-4	chr8	86888641	86888841	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3483.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	4.9624415653714	3.75141451744946	3.61596217913777	5.10378180590539	5.07558908178474	4.13103778968861	3.54459891421807	5.26281924901039	0.184693265447627	0.71339525634183	0.998431161219273
Merged-chr16-77644531-3	chr16	77644428	77644628	+	810.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1745.0	NR_029540	723952.0		NR_029540	ENSMUSG00000065472	Mir125b-2	Mirn125b-2|mir-125b-2	microRNA 125b-2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98849406-3	chr11	98849304	98849504	+	787.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001080925, exon 10 of 15)	exon (NM_001080925, exon 10 of 15)	12619.0	NM_001080925	268480.0	Mm.340766	NM_001080925	ENSMUSG00000038020	Rapgefl1	B230105J10	Rap guanine nucleotide exchange factor (GEF)-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-83361397-1	chr18	83361297	83361497	+	622.0	f0_balb.idr	Intergenic	Intergenic	-35513.0	NR_045361	70960.0	Mm.410834	NR_045361		4921531P14Rik	1700108N05Rik	RIKEN cDNA 4921531P14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-31424883-1	chr3	31424783	31424983	+	566.0	f0_balb.idr	Intergenic	Intergenic	-114564.0	NM_172861	241919.0	Mm.285366	NM_172861	ENSMUSG00000069072	Slc7a14	A930013N06|BC061928	solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-128421662-2	chr1	128421562	128421762	+	683.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RodERV21-int|LTR|ERV1	-4246.0	NM_145507	226414.0	Mm.28693	NM_145507	ENSMUSG00000026356	Dars	5730439G15Rik	aspartyl-tRNA synthetase	protein-coding	-1.27480050717774	-0.604729833679879	-1.25573295904267	-1.26493563944758	-1.27428069156472	-1.24210192204986	-1.25319678955844	-1.26328836405502	-2.6632876257018	0.439827081912762	1
Merged-chr5-146748899-2	chr5	146748821	146749021	+	945.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011669, intron 6 of 8)	intron (NM_011669, intron 6 of 8)	46035.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	2.27517743893582	1.77388778247139	2.70994285204019	1.8356591921132	2.44921748506194	1.78588518921244	1.5321939047556	1.98455185978151	-0.544279085216401	0.56595628702109	0.962163739245057
Merged-chr15-96596840-2	chr15	96596740	96596940	+	693.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166456, intron 4 of 15)	intron (NM_001166456, intron 4 of 15)	45122.0	NM_134086	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-8061908-3	chr10	8061797	8061997	+	859.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-105774.0	NM_138667	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	1.02864506354175	1.53659160265573	2.01559869241436	1.73302166956183	1.76704584560417	1.09881159594143	2.03244912144457	2.15007802651734	0.578616170822357	0.620933429997749	0.979324117529246
Merged-chr2-31435681-2	chr2	31435581	31435781	+	634.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34589.0	NM_007494	11898.0	Mm.3217	NM_007494	ENSMUSG00000076441	Ass1	AA408052|ASS|Ass-1|fold	argininosuccinate synthetase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-147502631-2	chr3	147502531	147502731	+	583.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	650264.0	NM_001302957	70892.0	Mm.187793	NM_027594	ENSMUSG00000036745	Ttll7	1110049N09Rik|4921517B04Rik|C630030B20|mTTLL7	tubulin tyrosine ligase-like family, member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-107760058-2	chr13	107759958	107760158	+	921.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 5 of 14)	intron (NM_145456, intron 5 of 14)	72661.0	NR_045900	72257.0	Mm.234155	NR_045900	ENSMUSG00000102000	1700006H21Rik	-	RIKEN cDNA 1700006H21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-42959701-1	chr4	42959601	42959801	+	552.0	f1_c57bl6.idr	TTS (NM_001355440)	TTS (NM_001355440)	9305.0	NM_001355440	56323.0	Mm.20437	NM_019874	ENSMUSG00000036052	Dnajb5	1110058L06Rik|AI462558|Hsc40|Hsp40-3	DnaJ heat shock protein family (Hsp40) member B5	protein-coding	0.511058222852073	0.111873554804126	0.603748629520493	0.650150095859952	0.100060066868653	0.112820077454954	0.108618623602139	0.105070839456588	-4.03142792440392	0.060908737471636	1
Merged-chr7-59248680-1	chr7	59248580	59248780	+	854.0	f0_balb.idr	intron (NM_011668, intron 4 of 12)	L1MB2|LINE|L1	19930.0	NM_173010	22215.0	Mm.9002	NM_011668	ENSMUSG00000025326	Ube3a	4732496B02|5830462N02Rik|A130086L21Rik|Hpve6a	ubiquitin protein ligase E3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-8833113-2	chr19	8833013	8833213	+	971.166626	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001081196, exon 14 of 14)	3' UTR (NM_001081196, exon 14 of 14)	-4354.0	NM_001136064	14705.0	Mm.345134	NM_008144	ENSMUSG00000071657	Bscl2	2900097C17Rik|AI046355|Gng3lg	Berardinelli-Seip congenital lipodystrophy 2 (seipin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125367886-4	chr6	125367793	125367993	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198604, intron 14 of 16)	intron (NM_198604, intron 14 of 16)	12611.0	NM_198604	213522.0	Mm.333396	NM_198604	ENSMUSG00000038167	Plekhg6	BC026778|Gm155	pleckstrin homology domain containing, family G (with RhoGef domain) member 6	protein-coding	3.09430721820979	1.70004774347941	2.96120128126363	4.09269190754705	2.73661315066415	2.96606840954116	4.04301370759409	3.82315656858831	0.427075276269616	0.555343483888009	0.959914380895535
Merged-chr3-137983990-2	chr3	137983890	137984090	+	742.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2441.0	NM_011932	26377.0	Mm.254835	NM_011932	ENSMUSG00000028159	Dapp1	Bam32	dual adaptor for phosphotyrosine and 3-phosphoinositides 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-128729443-2	chr4	128729343	128729543	+	823.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001195083, intron 1 of 6)	intron (NM_001195083, intron 1 of 6)	1872.0	NM_001195083	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	2.80762560154487	2.82170967931967	2.28863244712905	3.46677440741102	3.13824797748212	2.84267909411745	2.11569407671367	3.48363969760715	0.131900058794541	0.854016350792272	0.998431161219273
Merged-chr11-69037451-3	chr11	69037346	69037546	+	877.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001013256)	TTS (NM_001013256)	-8191.0	NM_011496	20877.0	Mm.3488	NM_011496	ENSMUSG00000020897	Aurkb	AIM-1|AIRK2|AL022959|Aik2|Aim1|Ark2|AurB|IPL1|STK-1|Stk12|Stk5	aurora kinase B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-13231713-2	chr9	13231613	13231813	+	695.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14028.0	NM_001033181	77532.0	Mm.459434	NM_001033181	ENSMUSG00000079083	Jrkl	C030035D04Rik|HHMJG	Jrk-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116220639-3	chr11	116220531	116220731	+	790.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_025276)	TTS (NM_025276)	4629.0	NR_004853	69681.0	Mm.33677	NR_004853	ENSMUSG00000092300	Cdk3-ps	2310050O10Rik|Cdk3	cyclin-dependent kinase 3, pseudogene	pseudo	0.357046125602807	0.756668092054157	0.974291653815655	0.36752359219448	0.358609661477735	0.91160997317719	0.3755873886875	1.13216082609586	0.542958193042583	0.768808551110336	1
Merged-chr16-35874622-4	chr16	35874512	35874712	+	903.616699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR84b|LTR|ERVL	-3230.0	NM_001039530	547253.0	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-99378208-4	chr9	99378124	99378324	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVB3_1-LTR_MM|LTR|ERVK	-19694.0	NM_177775	272636.0	Mm.490440	NM_177775	ENSMUSG00000037681	Esyt3	D930024E11|D9Ertd280e|Fam62c|mKIAA4186	extended synaptotagmin-like protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-94113575-2	chr17	94113475	94113675	+	572.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	636444.0	NM_001357136	76781.0	Mm.139146	NM_176917	ENSMUSG00000055660	Mettl4	2410198H06Rik|A730091E08Rik|AV296509|HsT661	methyltransferase like 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-100424205-2	chr15	100424105	100424305	+	896.666626	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040351, exon 1 of 3)	non-coding (NR_040351, exon 1 of 3)	1012.0	NR_040351	432982.0	Mm.234608	NM_001034883	ENSMUSG00000087444	Gm5475	EG432982	predicted gene 5475	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-85750423-3	chr1	85750309	85750509	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1539.0	NR_106172	102466882.0		NR_106172	ENSMUSG00000098634	Mir8096	Gm27479|mmu-mir-8096	microRNA 8096	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-31127085-4	chr7	31126945	31127145	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011322)	promoter-TSS (NM_011322)	-22.0	NM_011322	20266.0	Mm.1418	NM_011322	ENSMUSG00000019194	Scn1b	-	sodium channel, voltage-gated, type I, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-48968115-3	chr6	48968013	48968213	+	786.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MYSERV6-int|LTR|ERVK	-7030.0	NM_001029987	243376.0	Mm.244112	NM_001029987	ENSMUSG00000068536	Doxl2	-	diamine oxidase-like protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-59749086-4	chr9	59748982	59749182	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001172069, intron 1 of 2)	intron (NM_001172069, intron 1 of 2)	1567.0	NM_001172069	71599.0	Mm.279070	NM_027838	ENSMUSG00000051705	Senp8	9130010J17Rik|AU020827|Den1|Nedp1|Prsc2	SUMO/sentrin specific peptidase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-45826973-4	chr1	45826895	45827095	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31829.0	NM_028599	73674.0	Mm.270376	NM_028599	ENSMUSG00000025995	Wdr75	1300003A18Rik|2410118I19Rik|C77608	WD repeat domain 75	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-78175987-4	chr9	78175898	78176098	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040401)	promoter-TSS (NR_040401)	84.0	NR_040401	320295.0	Mm.131285	NR_040401	ENSMUSG00000097574	C920006O11Rik	-	RIKEN cDNA C920006O11 gene	ncRNA	5.42740972897598	5.57369560663009	5.75670189162586	4.32138162966456	5.24659128082607	6.04565337508628	6.23006907262467	5.30386329649503	0.457673403169415	0.18568961173677	0.661753651965673
Merged-chr11-104352315-3	chr11	104352215	104352415	+	723.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359634, intron 7 of 14)	ID4_|SINE|ID	89976.0	NM_001081045	76719.0	Mm.136418	NM_001081045	ENSMUSG00000018412	Kansl1	1700081L11Rik|9430041J06Rik|mKIAA1267	KAT8 regulatory NSL complex subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-65934993-4	chr18	65934904	65935104	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013833, exon 3 of 3)	exon (NM_013833, exon 3 of 3)	4085.0	NM_013833	19434.0	Mm.431047	NM_013833	ENSMUSG00000024518	Rax	7530406A22Rik|E130303K03Rik|Rx|ey-1|ey1	retina and anterior neural fold homeobox	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-136655238-4	chr6	136655184	136655384	+	778.333374	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025806, intron 1 of 10)	B3|SINE|B2	6609.0	NM_025806	66857.0	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	2.01175908858305	1.80477395770006	2.28084236933286	2.21887854370154	1.91670739295329	1.81617621364539	2.29816269371718	2.22986642079106	-0.0299206261238909	0.973377650346132	0.998431161219273
Merged-chr9-121704054-2	chr9	121703954	121704154	+	555.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178677, intron 1 of 7)	B1_Mur4|SINE|Alu	975.0	NM_178677	215474.0	Mm.31421	NM_178677	ENSMUSG00000061536	Sec22c	4932412K21|5930407I15Rik|C530046H07|Sec22l3	SEC22 homolog C, vesicle trafficking protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-139380560-4	chr4	139380482	139380682	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001160319)	promoter-TSS (NM_001160319)	-77.0	NM_001160319	69116.0	Mm.271956	NM_001160319	ENSMUSG00000066036	Ubr4	1810009A16Rik|A930005E13Rik|D930005K06Rik|Gm1032|Gm1666|N28143|RBAF600|Zubr1|mKIAA0462|p600	ubiquitin protein ligase E3 component n-recognin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-77280277-4	chr2	77280184	77280384	+	978.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175465, intron 1 of 17)	CpG	308.0	NM_175465	228071.0	Mm.27120	NM_175465	ENSMUSG00000042272	Sestd1	1500031J16Rik|A930010O20|Solo/Trio8	SEC14 and spectrin domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-118745237-2	chr2	118745137	118745337	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001301269)	promoter-TSS (NM_001301269)	-521.0	NM_001301269	100043272.0	Mm.398072	NM_001301269	ENSMUSG00000074918	Inafm2	5430417L22Rik	InaF motif containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-127632734-2	chr3	127632634	127632834	+	629.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009718)	promoter-TSS (NM_009718)	-402.0	NM_009718	11924.0	Mm.42017	NM_009718	ENSMUSG00000027967	Neurog2	Atoh4|Math4A|bHLHa8|ngn-2|ngn2	neurogenin 2	protein-coding	-1.84354474832578	-1.81325489144778	-1.53416061964661	-1.82993901100912	-1.8414184563789	-1.81126990231468	-1.82034119297928	-1.82859217979378	-1.52252619601533	0.665276690233728	1
Merged-chr11-69016004-4	chr11	69015918	69016118	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001013256, exon 1 of 23)	5' UTR (NM_001013256, exon 1 of 23)	107.0	NM_001013256	68964.0	Mm.285785	NM_001013256	ENSMUSG00000020898	Ctc1	1500010J02Rik|AAF-132|AAF132	CTS telomere maintenance complex component 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-36183276-2	chr19	36183176	36183376	+	651.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63432.0	NM_013468	107765.0	Mm.10279	NM_013468	ENSMUSG00000024803	Ankrd1	Alrp|CARP|Crap|MARP1	ankyrin repeat domain 1 (cardiac muscle)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-48300459-4	chr17	48300418	48300618	+	839.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001033405, exon 1 of 5)	5' UTR (NM_001033405, exon 1 of 5)	480.0	NM_001360121	328833.0	Mm.329104	NM_001033405	ENSMUSG00000071068	Treml2	AW049306|Gm750|Tlt2	triggering receptor expressed on myeloid cells-like 2	protein-coding	1.65809031261591	2.41840067493792	1.92017037633535	1.86834346415897	1.90060370974131	1.68837454172778	1.93469499877293	1.59608711243463	-0.60907218428724	0.530558517934582	0.950379381633191
Merged-chr9-77754703-6	chr9	77754643	77754843	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_151778, exon 1 of 17)	non-coding (NR_151778, exon 1 of 17)	208.0	NM_010295	14629.0	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128779675-4	chr10	128779575	128779775	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11235.0	NM_001164197	58223.0	Mm.131266	NM_021412	ENSMUSG00000025355	Mmp19	-	matrix metallopeptidase 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-118473661-2	chr1	118473561	118473761	+	615.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359330, intron 8 of 39)	intron (NM_001359330, intron 8 of 39)	-14396.0	NR_027901	68204.0	Mm.443536	NR_027901	ENSMUSG00000107722	2900060B14Rik	-	RIKEN cDNA 2900060B14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-20771284-2	chr14	20771184	20771384	+	626.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039139, intron 3 of 18)	intron (NM_001039139, intron 3 of 18)	22804.0	NM_001039138	12325.0	Mm.235182	NM_178597	ENSMUSG00000021820	Camk2g	Camkg	calcium/calmodulin-dependent protein kinase II gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-86897380-4	chr12	86897292	86897492	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12578.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-19537544-4	chr4	19537461	19537661	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027769, intron 7 of 15)	intron (NM_027769, intron 7 of 15)	32547.0	NM_027769	70568.0	Mm.38390	NM_027769	ENSMUSG00000028228	Cpne3	5430428M23Rik|5730450C07Rik|C85108|CPN3	copine III	protein-coding	3.19323485134765	2.60630591592323	3.92973207421622	3.55929288035664	3.41153894808119	2.24591521470796	2.81861273916969	2.5981639899865	-0.934942437987969	0.163743897875617	0.626866396525736
Merged-chr5-139017912-4	chr5	139017805	139018005	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001253890, exon 11 of 11)	3' UTR (NM_001253890, exon 11 of 11)	-22952.0	NM_008808	18590.0	Mm.2675	NM_008808	ENSMUSG00000025856	Pdgfa	-	platelet derived growth factor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-60215968-2	chr12	60215868	60216068	+	869.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	-996485.0	NM_001033156	70611.0	Mm.311026	NM_001033156	ENSMUSG00000035329	Fbxo33	5730501N20Rik|AI642135	F-box protein 33	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-42760431-4	chr10	42760321	42760521	+	989.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1075.0	NM_001359283	140740.0	Mm.214344	NM_153055	ENSMUSG00000019802	Sec63	5730478J10Rik|AI649014|AW319215	SEC63-like (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-62682673-2	chr4	62682573	62682773	+	679.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310706, intron 1 of 6)	intron (NM_001310706, intron 1 of 6)	8699.0	NM_001310706	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-136627853-2	chr1	136627753	136627953	+	741.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_177643, exon 2 of 2)	exon (NM_177643, exon 2 of 2)	2952.0	NM_001160251	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-58462095-4	chr16	58462004	58462204	+	775.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356484, intron 13 of 15)	B2_Mm2|SINE|B2	53569.0	NM_028523	73379.0	Mm.373589	NM_028523	ENSMUSG00000035107	Dcbld2	1700055P21Rik|AW146002|CLCP1|Esdn	discoidin, CUB and LCCL domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-7869044-4	chr18	7868886	7869086	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146298)	promoter-TSS (NM_001146298)	154.0	NM_001282093	225131.0	Mm.204524	NM_153085	ENSMUSG00000024283	Wac	1110067P07Rik|A230035H12Rik|AI256735|AI256776|Wwp4	WW domain containing adaptor with coiled-coil	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-106640958-3	chr7	106640870	106641070	+	724.155579	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001277182, intron 1 of 3)	MLT2B2|LTR|ERVL	3675.0	NM_001277179	434223.0	Mm.276443	NM_001277179		Gm1966	-	predicted gene 1966	protein-coding	2.99925785104876	3.04043868687639	1.96905122283729	1.73472840791709	1.97124912877251	2.61311103818563	1.30906842800703	2.07591472348893	-1.0816704170051	0.249397422037206	0.747698903845194
Merged-chr7-143474927-4	chr7	143474801	143475001	+	913.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001042760)	promoter-TSS (NM_001042760)	-215.0	NM_001042760	18400.0	Mm.271740	NM_008767	ENSMUSG00000000154	Slc22a18	AW260131|BWR1A|BWSCR1A|HET|ITM|Impt1|Orctl2|Slc22a1l|TSSC5|p45-BWR1A	solute carrier family 22 (organic cation transporter), member 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-29734488-3	chr16	29734391	29734591	+	886.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	155157.0	NM_001199177	74143.0	Mm.274285	NM_133752	ENSMUSG00000038084	Opa1	1200011N24Rik|AI225888|AI847218|lilr3|mKIAA0567	OPA1, mitochondrial dynamin like GTPase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-13438610-4	chr10	13438507	13438707	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195065, intron 1 of 12)	intron (NM_001195065, intron 1 of 12)	35789.0	NM_001195065	215789.0	Mm.283359	NM_001033257	ENSMUSG00000062866	Phactr2	AV158170|BC012871	phosphatase and actin regulator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-163764014-3	chr2	163763906	163764106	+	835.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13767.0	NM_001272052	11486.0	Mm.388	NM_007398	ENSMUSG00000017697	Ada	-	adenosine deaminase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-67363892-4	chr1	67363777	67363977	+	902.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	240850.0	NM_001080809	227231.0	Mm.343942	NM_001080809	ENSMUSG00000025991	Cps1	4732433M03Rik|CPS|D1Ucla3	carbamoyl-phosphate synthetase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-138143448-4	chr3	138143345	138143545	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001348196)	promoter-TSS (NM_001348196)	-3.0	NM_175389	108943.0	Mm.471692	NM_175389	ENSMUSG00000004127	Trmt10a	3110023L08Rik|AA794508|Rg9mtd2|Rnmtd2	tRNA methyltransferase 10A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-34380503-4	chr7	34380394	34380594	+	927.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025948, intron 1 of 10)	intron (NM_025948, intron 1 of 10)	9211.0	NM_001360654	67070.0	Mm.276503	NM_025948	ENSMUSG00000066568	Lsm14a	2700023B17Rik|AA407828|AU017544|Tral|mRAP55A	LSM14A mRNA processing body assembly factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-115479474-1	chr8	115479374	115479574	+	540.0	f1_balb.idr	Intergenic	Intergenic	227420.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-85594570-2	chr3	85594470	85594670	+	571.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144896, intron 2 of 12)	intron (NM_144896, intron 2 of 12)	20441.0	NM_144896	229487.0	Mm.52275	NM_144896	ENSMUSG00000028085	Gatb	9430026F02Rik|Pet112|Pet112l	glutamyl-tRNA(Gln) amidotransferase, subunit B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10914512-4	chr19	10914405	10914605	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009580, intron 11 of 11)	intron (NM_009580, intron 11 of 11)	6096.0	NM_009580	22786.0	Mm.24767	NM_009580	ENSMUSG00000024734	Zp1	-	zona pellucida glycoprotein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-7942791-2	chr15	7942691	7942891	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081402, intron 10 of 17)	MusHAL1|LINE|L1	127241.0	NM_001301357	14573.0	Mm.4679	NM_010275	ENSMUSG00000022144	Gdnf	AI385739|ATF	glial cell line derived neurotrophic factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-73787303-2	chr15	73787203	73787403	+	690.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001033365, exon 11 of 11)	3' UTR (NM_001033365, exon 11 of 11)	22630.0	NM_001362047	100041273.0	Mm.379154	NM_001362047		Gm3244	-	predicted pseudogene 3244	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-121572004-3	chr2	121571906	121572106	+	810.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360084, intron 6 of 13)	intron (NM_001360084, intron 6 of 13)	65283.0	NM_001290986	241627.0	Mm.293284	NM_030234	ENSMUSG00000027242	Wdr76	5830411K18Rik|6030457D09|AA517836	WD repeat domain 76	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-89162104-2	chr15	89162004	89162204	+	565.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_106066)	TTS (NR_106066)	804.0	NR_106066	102465672.0		NR_106066	ENSMUSG00000106328	Mir7118	mmu-mir-7118	microRNA 7118	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-69505329-3	chr3	69505237	69505437	+	695.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178726, intron 2 of 3)	intron (NM_178726, intron 2 of 3)	93623.0	NM_020026	26879.0	Mm.153710	NM_020026	ENSMUSG00000043300	B3galnt1	B3galt3|b3GT3	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125145168-4	chr6	125145053	125145253	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302779)	promoter-TSS (NM_001302779)	-71.0	NR_126495	320678.0	Mm.129415	NM_178787	ENSMUSG00000038271	Iffo1	4733401N06Rik|A930037G23Rik|HOM-TES-103|Iffo	intermediate filament family orphan 1	protein-coding	1.66933058314943	2.61369837327739	1.95181027303951	2.15952673903459	2.17327417960504	2.31146982894775	2.23665421381833	2.04821903966395	0.118168103181435	0.893489787994052	0.998431161219273
Merged-chr4-118999822-4	chr4	118999715	118999915	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37848.0	NM_133892	100470.0	Mm.26698	NM_133892	ENSMUSG00000024903	Lao1	AW990848	L-amino acid oxidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-98268295-2	chr12	98268195	98268395	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008152)	promoter-TSS (NM_008152)	-340.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-3405722-3	chr9	3405613	3405813	+	567.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027545, intron 1 of 17)	Lx2B|LINE|L1	1628.0	NM_027545	244672.0	Mm.245482	NM_027545	ENSMUSG00000025898	Cwf19l2	3230401L03Rik|9030209E10	CWF19-like 2, cell cycle control (S. pombe)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-71209554-4	chr2	71209440	71209640	+	904.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2166.0	NM_001198875	13427.0	Mm.249479	NM_010064	ENSMUSG00000027012	Dync1i2	3110079H08Rik|AW554389|Dncic2	dynein cytoplasmic 1 intermediate chain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-121155522-3	chr1	121155432	121155632	+	692.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	68127.0	NR_110450	98452.0	Mm.131017	NR_038008	ENSMUSG00000097881	Celrr	AI848258|B230209K01Rik|Celr|Gm818	cerebellum expressed regulatory RNA	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-56746284-2	chr19	56746184	56746384	+	653.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	23912.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-116990326-4	chr2	116990249	116990449	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	90197.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-80072491-3	chr11	80072399	80072599	+	786.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018776, intron 1 of 7)	intron (NM_018776, intron 1 of 7)	8492.0	NM_001277106	54394.0	Mm.272093	NM_018776	ENSMUSG00000017561	Crlf3	BB164954|Creme9|Cytor4	cytokine receptor-like factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-41959515-2	chr10	41959415	41959615	+	598.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001034858, intron 10 of 17)	intron (NM_001034858, intron 10 of 17)	58867.0	NM_001034858	213402.0	Mm.211320	NM_001034858	ENSMUSG00000071324	Armc2	2610018I05Rik	armadillo repeat containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-53405285-4	chr9	53405199	53405399	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029247)	promoter-TSS (NM_029247)	13.0	NM_029247	75311.0	Mm.26078	NM_029247	ENSMUSG00000005131	4930550C14Rik	AU017961	RIKEN cDNA 4930550C14 gene	protein-coding	4.53894637179723	4.33827210154235	4.79920670301731	4.82920311127166	4.37215835654418	4.30277923395624	4.40804656251719	4.66021496777832	-0.252092032311823	0.492380177561762	0.935335239136482
Merged-chr16-75831565-3	chr16	75831448	75831648	+	858.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64730.0	NM_030201	110920.0	Mm.26704	NM_030201	ENSMUSG00000032932	Hspa13	1600002I10Rik|AV006182|B230217N24Rik|Stch	heat shock protein 70 family, member 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-24467105-3	chr7	24467016	24467216	+	844.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011113, intron 3 of 6)	ZP3AR|Satellite|Satellite	4633.0	NM_011113	18793.0	Mm.1359	NM_011113	ENSMUSG00000046223	Plaur	Cd87|u-PAR|uPAR	plasminogen activator, urokinase receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-76396116-4	chr13	76396010	76396210	+	991.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030174, intron 1 of 20)	intron (NM_030174, intron 1 of 20)	11149.0	NM_030174	78771.0	Mm.316249	NM_030174	ENSMUSG00000021596	Mctp1	2810465F10Rik	multiple C2 domains, transmembrane 1	protein-coding	4.19180527659857	3.72822712599339	4.65001729219817	4.49035339462696	4.02598191183927	4.09700763596342	4.50070217829071	4.37386762093586	-0.0664151586444647	0.873688276186985	0.998431161219273
Merged-chr12-5206583-2	chr12	5206483	5206683	+	929.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164493, intron 3 of 13)	intron (NM_001164493, intron 3 of 13)	169099.0	NM_001164493	208439.0	Mm.388281	NM_001164493	ENSMUSG00000020627	Klhl29	A230106N14Rik|Gm68|Kbtbd9|mKIAA1921	kelch-like 29	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-60373106-3	chr10	60373007	60373207	+	888.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001159572)	TTS (NM_001159572)	26256.0	NM_028732	74048.0	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-82907842-2	chr11	82907742	82907942	+	654.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145431, intron 2 of 12)	intron (NM_145431, intron 2 of 12)	553.0	NM_145431	217011.0	Mm.29176	NM_145431	ENSMUSG00000020692	Nle1	AL022765|BC018399|Nle|l11Jus1|l11Jus4	notchless homolog 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-135007834-4	chr6	135007743	135007943	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3769.0	NM_026360	67755.0	Mm.166524	NM_026360	ENSMUSG00000030204	Ddx47	4930588A18Rik|C77285	DEAD (Asp-Glu-Ala-Asp) box polypeptide 47	protein-coding	6.18746994465061	5.64361995079586	5.72840276542251	6.41107597750317	6.53318339514799	5.90558867254645	6.50125848931118	6.66822881595794	0.434051593221999	0.0813294763274206	0.435621007578746
Merged-chr1-156028551-4	chr1	156028457	156028657	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144791, intron 4 of 6)	intron (NM_144791, intron 4 of 6)	6260.0	NM_001160019	208263.0	Mm.211654	NM_144791	ENSMUSG00000026466	Tor1aip1	LAP1|Lap1B	torsin A interacting protein 1	protein-coding	6.01806589690155	5.96727070738364	6.25895112695919	5.6428672170602	5.87951649462166	6.18053695887001	5.86289484172192	5.40449883681807	-0.148552369263177	0.559562235528982	0.960321604678676
Merged-chr10-75227205-3	chr10	75227118	75227318	+	781.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145826, intron 2 of 18)	MIR|SINE|MIR	14828.0	NM_001145826	74392.0	Mm.27716	NM_153406	ENSMUSG00000033444	Specc1l	4930470P14Rik|4932439K10Rik|9530057A13Rik|AI317249|Cytsa|mKIAA0376	sperm antigen with calponin homology and coiled-coil domains 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135945907-4	chr4	135945795	135945995	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008254)	promoter-TSS (NM_008254)	-553.0	NM_008254	15356.0	Mm.482102	NM_008254	ENSMUSG00000028672	Hmgcl	AW476067|HL	3-hydroxy-3-methylglutaryl-Coenzyme A lyase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-69226706-2	chr17	69226597	69226797	+	638.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355736, intron 3 of 21)	intron (NM_001355736, intron 3 of 21)	50509.0	NR_045428	69750.0	Mm.439063	NR_045428	ENSMUSG00000100572	2410021H03Rik	-	RIKEN cDNA 2410021H03 gene	ncRNA	-1.21575676353841	-1.1882771616738	-1.1995328574972	-1.2087786211754	-1.21524488394202	-1.18583800543462	-1.19698481468061	-0.540595393272118	2.74438217975722	0.425994238664144	1
Merged-chr19-16009419-3	chr19	16009315	16009515	+	756.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045355, intron 2 of 2)	MTD|LTR|ERVL-MaLR	24340.0	NR_045355	100502653.0	Mm.149980	NR_045355	ENSMUSG00000097557	C130060C02Rik	-	RIKEN cDNA C130060C02 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-160010746-5	chr2	160010623	160010823	+	807.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-5930.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-43282843-4	chr7	43282685	43282885	+	772.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30515.0	NM_001357812	69930.0	Mm.45367	NM_027264	ENSMUSG00000012640	Zfp715	2610041B18Rik|mszf15	zinc finger protein 715	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-41518701-4	chr10	41518621	41518821	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016898)	promoter-TSS (NM_016898)	-779.0	NM_016898	53599.0	Mm.269815	NM_016898	ENSMUSG00000019818	Cd164	A115|A24|AA589639|AW540279|MGC-24|MSSP	CD164 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-16809659-2	chr1	16809559	16809759	+	722.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	121203.0	NM_001159711	17087.0	Mm.116844	NM_016923	ENSMUSG00000025779	Ly96	ESOP-1|MD-2|MD2	lymphocyte antigen 96	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3635123-1	chr19	3635023	3635223	+	586.0	f1_c57bl6.idr	intron (NM_008513, intron 5 of 22)	MLT1C|LTR|ERVL-MaLR	51441.0	NM_008513	16973.0	Mm.274581	NM_008513	ENSMUSG00000024913	Lrp5	BMND1|HBM|LR3|LRP7|OPPG|mKIAA4142	low density lipoprotein receptor-related protein 5	protein-coding	0.935721811750889	0.400364628981571	0.393351916432206	0.550797146379517	0.947320365404114	0.897441553549816	0.724092584411728	0.388884580159095	0.956825632678009	0.584178740995019	1
Merged-chr2-38052425-2	chr2	38052325	38052525	+	545.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146122, intron 5 of 21)	intron (NM_146122, intron 5 of 21)	234959.0	NM_146122	227801.0	Mm.314245	NM_146122	ENSMUSG00000035392	Dennd1a	6030446I19Rik|connecdenn	DENN/MADD domain containing 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-123343623-4	chr8	123343495	123343695	+	954.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172287, intron 1 of 14)	intron (NM_172287, intron 1 of 14)	10882.0	NM_172287	234857.0	Mm.150200	NM_172287	ENSMUSG00000010154	Spire2	BC026502|Spir-2|Spir2	spire type actin nucleation factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-140946102-2	chr7	140946002	140946202	+	899.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145387, intron 10 of 13)	intron (NM_145387, intron 10 of 13)	4137.0	NM_053088	73835.0	Mm.389989	NM_053088	ENSMUSG00000025489	Ifitm5	1110003J06Rik|AW213665|Bril|DSPA1|Hrmp1|Hrtm1	interferon induced transmembrane protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-143956369-3	chr1	143956283	143956483	+	911.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47766.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-13963831-2	chr14	13963731	13963931	+	816.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1979.0	NM_001359901	66231.0	Mm.295875	NM_025435	ENSMUSG00000053453	Thoc7	Nif3l1bp1	THO complex 7	protein-coding	1.22565604032127	0.372688424841914	1.11430272693932	0.355797406327386	1.16567530178724	0.374811247899715	0.365303077596594	0.357096030107134	-0.985605798785473	0.610575311712567	1
Merged-chr5-106693220-2	chr5	106693120	106693320	+	831.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026856, intron 1 of 6)	intron (NM_026856, intron 1 of 6)	3610.0	NM_026856	52397.0	Mm.249474	NM_026856	ENSMUSG00000049606	Zfp644	1110068L01Rik|AA408882|BM-005|D5Ertd689e|Zep-2	zinc finger protein 644	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-115673245-2	chr3	115673157	115673357	+	589.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41798.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-39003591-4	chr13	39003487	39003687	+	872.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42712.0	NM_001170431	108652.0	Mm.255506	NM_134060	ENSMUSG00000021432	Slc35b3	4921526O06Rik|AI428480|CGI-19|PABST2|PAPST2	solute carrier family 35, member B3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44461448-4	chr9	44461384	44461584	+	881.7589109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-6717.0	NM_009476	22269.0	Mm.4453	NM_009476	ENSMUSG00000041523	Upk2	AW491716|UPII	uroplakin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-11085018-5	chr4	11084953	11085153	+	788.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8848.0	NM_001085493	76947.0	Mm.275265	NM_001085493	ENSMUSG00000050323	Ndufaf6	2310030N02Rik	NADH dehydrogenase (ubiquinone) complex I, assembly factor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-73442275-3	chr2	73442195	73442395	+	847.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289722, intron 3 of 7)	ORR1G|LTR|ERVL-MaLR	11594.0	NM_001289722	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-43355377-4	chr5	43355264	43355464	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-120010.0	NR_028417	665934.0	Mm.381491	NR_028417	ENSMUSG00000085720	Gm7854	EG665934	predicted gene 7854	ncRNA	6.28923281357044	5.80112226264976	6.08938104440048	6.30699661929643	6.11165840292402	5.98997496039208	5.56157539101499	5.93784288062411	-0.246242259617683	0.299850692781303	0.801244565215384
Merged-chr9-44646203-2	chr9	44646103	44646303	+	689.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27030.0	NM_001277851	58866.0	Mm.45380	NM_021481	ENSMUSG00000032098	Treh	2210412M19Rik	trehalase (brush-border membrane glycoprotein)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88745606-2	chr3	88745507	88745707	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_018804, exon 4 of 4)	3' UTR (NM_018804, exon 4 of 4)	26992.0	NM_018804	229521.0	Mm.379376	NM_018804	ENSMUSG00000068923	Syt11	1500004A13Rik|3632445O20Rik|5430404N14Rik|6530420C11Rik|AI851970	synaptotagmin XI	protein-coding	1.46913568656329	0.989402374444747	2.46647879207416	1.18804439156236	1.6203648984901	0.995080403368609	2.62805892922433	1.56669528983795	0.444210570374161	0.713818098135903	0.998431161219273
Merged-chr7-49007097-4	chr7	49006983	49007183	+	999.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111016, intron 2 of 38)	intron (NM_001111016, intron 2 of 38)	48010.0	NM_001111016	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-107889779-2	chr13	107889679	107889879	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_145456, exon 1 of 15)	exon (NM_145456, exon 1 of 15)	285.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46356482-2	chr19	46356382	46356582	+	700.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029186)	promoter-TSS (NM_029186)	-398.0	NM_029186	75146.0	Mm.159290	NM_029186	ENSMUSG00000025227	Mfsd13a	4930449A08Rik|4930538D17Rik|Tmem180	major facilitator superfamily domain containing 13a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-156718601-4	chr1	156718521	156718721	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145413, intron 1 of 7)	CpG	289.0	NM_145413	215015.0	Mm.229107	NM_145413	ENSMUSG00000033557	Fam20b	C530043G21Rik|mKIAA0475	family with sequence similarity 20, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70239093-6	chr11	70238934	70239134	+	919.7222289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173742, intron 1 of 2)	intron (NM_173742, intron 1 of 2)	818.0	NM_173742	52898.0	Mm.29852	NM_173742	ENSMUSG00000093989	Rnasek	2310033H11Rik|AA571397|D11Bwg0434e	ribonuclease, RNase K	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-107110420-4	chr3	107110333	107110533	+	980.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008417, exon 3 of 3)	3' UTR (NM_008417, exon 3 of 3)	8866.0	NM_008417	16490.0	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3885368-2	chr12	3885268	3885468	+	792.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007872, intron 6 of 22)	intron (NM_007872, intron 6 of 22)	-6376.0	NM_153743	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-17591433-1	chr12	17591333	17591533	+	820.0	f0_c57.idr	Intergenic	MYSERV-int|LTR|ERVK	46560.0	NM_013614	18263.0	Mm.34102	NM_013614	ENSMUSG00000011179	Odc1	ODC	ornithine decarboxylase, structural 1	protein-coding	1.04027981054338	0.23878131178905	0.0214904859489756	0.196664399851973	0.00887837021236551	0.420191645271237	0.0229733667826229	0.0171964072350443	-2.35178822790721	0.26284506321227	1
Merged-chr7-136481643-2	chr7	136481543	136481743	+	601.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-132228.0	NR_040459	330664.0	Mm.127762	NR_040459	ENSMUSG00000109633	C230079O03Rik	C230079O03	RIKEN cDNA C230079O03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-53130920-4	chr15	53130814	53131014	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	215269.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-110598587-4	chr13	110598434	110598634	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	203490.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-51928600-2	chr11	51928500	51928700	+	581.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-39031.0	NM_029976	52626.0	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-93104225-2	chr9	93104125	93104325	+	576.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus1|LINE|L1	-98492.0	NR_040756	78349.0	Mm.52612	NR_040756	ENSMUSG00000100294	1700034K08Rik	-	RIKEN cDNA 1700034K08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-18427427-2	chr16	18427327	18427527	+	717.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007744)	promoter-TSS (NM_007744)	-711.0	NM_001111062	12846.0	Mm.100940	NM_007744	ENSMUSG00000000326	Comt	Comt1|D16Wsu103e|D330014B15Rik	catechol-O-methyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-114259511-2	chr6	114259411	114259611	+	979.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23124.0	NM_178703	232333.0	Mm.5260	NM_178703	ENSMUSG00000030310	Slc6a1	A730043E01|GABATHG|GABATR|GAT-1|Gabt|Gabt1|Gat1|XT-1|Xtrp1	solute carrier family 6 (neurotransmitter transporter, GABA), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96578693-2	chr3	96578593	96578793	+	798.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_027241, intron 7 of 7)	intron (NM_027241, intron 7 of 7)	-11892.0	NR_040409	100038464.0	Mm.475126	NR_040409	ENSMUSG00000074398	Gm15441	-	predicted gene 15441	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-124858764-4	chr2	124858656	124858856	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	205175.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-136559953-4	chr1	136559853	136560053	+	815.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64948.0	NM_177643	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-59824178-2	chr13	59824078	59824278	+	838.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2B2|LINE|L1	-1031.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65075335-4	chr9	65075233	65075433	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028906, intron 17 of 20)	intron (NM_028906, intron 17 of 20)	-26153.0	NM_020043	56741.0	Mm.209041	NM_020043	ENSMUSG00000032816	Igdcc4	DDM36|Nope	immunoglobulin superfamily, DCC subclass, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-87938526-1	chr7	87938426	87938626	+	683.0	f0_balb.idr	intron (NM_001081414, intron 4 of 9)	intron (NM_001081414, intron 4 of 9)	-339559.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-152556642-3	chr3	152556543	152556743	+	855.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355635, intron 6 of 8)	intron (NM_001355635, intron 6 of 8)	-110270.0	NR_040386	99542.0	Mm.394921	NR_040386	ENSMUSG00000097745	AI115009	-	expressed sequence AI115009	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71568086-1	chr8	71567986	71568186	+	892.0	f1_balb.idr	promoter-TSS (NM_011977)	promoter-TSS (NM_011977)	-785.0	NM_011977	26457.0	Mm.38165	NM_011977	ENSMUSG00000031808	Slc27a1	FATP1|Fatp	solute carrier family 27 (fatty acid transporter), member 1	protein-coding	1.0162341470312	0.613477143403587	0.601840313039372	0.78525548757246	1.02648177334865	1.1839710725184	1.73612859345636	0.789172077525513	2.23744764999445	0.134984266359843	0.573799326075797
Merged-chr16-33008292-2	chr16	33008192	33008392	+	896.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081255, intron 20 of 20)	ID_B1|SINE|B4	47894.0	NM_178378	69707.0	Mm.227918	NM_178378	ENSMUSG00000035578	Iqcg	2400003L07Rik|G1-374-12|esgd12d|repro1|stubby12d	IQ motif containing G	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21322697-2	chr9	21322597	21322797	+	548.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359227, intron 1 of 22)	intron (NM_001359227, intron 1 of 22)	1978.0	NM_001199186	68682.0	Mm.148425	NM_152808	ENSMUSG00000057193	Slc44a2	1110028E10Rik|CTL2	solute carrier family 44, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140390990-3	chr5	140390879	140391079	+	623.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14|LTR|ERV1	-1671.0	NM_172277	231834.0	Mm.27098	NM_172277	ENSMUSG00000029560	Snx8	B130023O14Rik	sorting nexin 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70640534-2	chr11	70640434	70640634	+	781.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_010326, exon 2 of 2)	exon (NM_010326, exon 2 of 2)	1412.0	NM_010326	14723.0	Mm.377085	NM_010326	ENSMUSG00000050675	Gp1ba	GP-Ib alpha|GPIba|GPIbalpha	glycoprotein 1b, alpha polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128909271-3	chr10	128909177	128909377	+	908.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001282966)	promoter-TSS (NM_001282966)	-68.0	NM_001282966	12512.0	Mm.371552	NM_007653	ENSMUSG00000025351	Cd63	C75951|ME491|Tspan30	CD63 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-3432758-4	chr5	3432655	3432855	+	969.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 4 of 7)	intron (NM_009873, intron 4 of 7)	88862.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-12906848-4	chr4	12906758	12906958	+	982.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173746)	promoter-TSS (NM_173746)	21.0	NM_001171801	208820.0	Mm.12057	NM_173746	ENSMUSG00000055963	Triqk	C130086A10|Gm11818	triple QxxK/R motif containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-20314134-2	chr10	20314034	20314234	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025392, intron 1 of 12)	intron (NM_001025392, intron 1 of 12)	1665.0	NM_001025393	72567.0	Mm.294783	NM_153787	ENSMUSG00000037608	Bclaf1	2610102K23Rik|2700025J07Rik|2810454G14Rik|5730534O06Rik|AI450190|AW556225|Btf|mKIAA0164	BCL2-associated transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-79786861-4	chr17	79786775	79786975	+	992.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11B|LTR|ERVK	-71834.0	NM_009994	13078.0	Mm.214016	NM_009994	ENSMUSG00000024087	Cyp1b1	CP1B|P4501b1	cytochrome P450, family 1, subfamily b, polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3806083-2	chr12	3805983	3806183	+	732.833374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007872)	promoter-TSS (NM_007872)	-897.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-4080498-3	chr12	4080411	4080611	+	864.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2063.0	NM_153082	217378.0	Mm.271656	NM_153082	ENSMUSG00000020657	Dnajc27	AI639580|C330021A05Rik|Rabj|Rbj	DnaJ heat shock protein family (Hsp40) member C27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-145124462-3	chr7	145124362	145124562	+	752.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	83657.0	NR_033626	100040049.0	Mm.102235	NR_033626	ENSMUSG00000109305	1810010D01Rik	Gm2572	RIKEN cDNA 1810010D01 gene	ncRNA	0.602832963090534	1.43515884409469	0.626433446788246	0.617642993729031	1.25080352347237	1.33087827220922	0.833664029461521	1.22518972238518	1.29858166254301	0.406060852690513	0.89095290927429
Merged-chr19-27416635-1	chr19	27416535	27416735	+	547.0	f1_c57bl6.idr	intron (NM_177474, intron 11 of 17)	intron (NM_177474, intron 11 of 17)	13273.0	NM_177474	52874.0	Mm.261027	NM_177474	ENSMUSG00000041360	Pum3	1110069H02Rik|AA675048|D19Bwg1357e	pumilio RNA-binding family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-100005483-4	chr12	100005387	100005587	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164426, intron 2 of 2)	intron (NM_001164426, intron 2 of 2)	40988.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-113000806-4	chr12	113000697	113000897	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028193)	promoter-TSS (NM_028193)	-176.0	NM_028193	72308.0	Mm.196721	NM_028193	ENSMUSG00000011158	Brf1	2510002F24Rik|GTF3B|TAF3C|TAFIII90|TFIIIB90|mTFIIIB90	BRF1, RNA polymerase III transcription initiation factor 90 kDa subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-31211883-4	chr9	31211792	31211992	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001102456)	promoter-TSS (NM_001102456)	-44.0	NM_001102456	11804.0	Mm.19133	NM_009691	ENSMUSG00000031996	Aplp2	AI790698|APLP-2|CDEBP	amyloid beta (A4) precursor-like protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117225252-2	chr10	117225152	117225352	+	814.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026570)	promoter-TSS (NM_026570)	-745.0	NM_026570	64050.0	Mm.233529	NM_026570	ENSMUSG00000020171	Yeats4	4930573H17Rik|B230215M10Rik|GAS41|NuBI-1	YEATS domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-23522817-2	chr13	23522717	23522917	+	603.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-8227.0	NM_153173	69386.0	Mm.158272	NM_153173	ENSMUSG00000060981	Hist1h4h	1700024H08Rik	histone cluster 1, H4h	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-73536508-3	chr2	73536387	73536587	+	901.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa-int|LTR|ERVL-MaLR	-7000.0	NM_153138	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-88332554-4	chr10	88332443	88332643	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027878, intron 4 of 6)	intron (NM_027878, intron 4 of 6)	24532.0	NM_027878	71712.0	Mm.35450	NM_027878	ENSMUSG00000020057	Dram1	1200002N14Rik|Dram	DNA-damage regulated autophagy modulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-128661337-4	chr4	128661240	128661440	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195130, intron 1 of 14)	intron (NM_001195130, intron 1 of 14)	6638.0	NM_001195130	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-173356242-3	chr2	173356125	173356325	+	930.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CAAAA)n|Simple_repeat|Simple_repeat	-79692.0	NM_022995	65112.0	Mm.73682	NM_022995	ENSMUSG00000038400	Pmepa1	2210418I02Rik|AW455466|Erg1.2|N4wbp4|Stag1|Tmepai	prostate transmembrane protein, androgen induced 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-73901296-4	chr12	73901186	73901386	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001313920)	promoter-TSS (NM_001313920)	-38.0	NM_001313920	15251.0	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-75511720-4	chr12	75511639	75511839	+	910.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012024, intron 3 of 13)	intron (NM_012024, intron 3 of 13)	84461.0	NM_012024	26932.0	Mm.259626	NM_012024	ENSMUSG00000021051	Ppp2r5e	4633401M22Rik|AI449017|B56beta	protein phosphatase 2, regulatory subunit B', epsilon	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34578244-3	chr17	34578147	34578347	+	770.277771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010929, intron 18 of 29)	intron (NM_010929, intron 18 of 29)	-11559.0	NM_134116	106512.0	Mm.26584	NM_134116	ENSMUSG00000034786	Gpsm3	AA960287|AGS4	G-protein signalling modulator 3 (AGS3-like, C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-57011426-4	chr17	57011312	57011512	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133801)	promoter-TSS (NM_133801)	-124.0	NM_133801	98053.0	Mm.24632	NM_133801	ENSMUSG00000002658	Gtf2f1	2810405L04Rik|C76800|RAP74	general transcription factor IIF, polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34650726-4	chr17	34650688	34650888	+	695.625	f1_balb.idr|f1_c57bl6.idr	exon (NM_017406, exon 8 of 18)	exon (NM_017406, exon 8 of 18)	3642.0	NM_017406	12915.0	Mm.4068	NM_017406	ENSMUSG00000015461	Atf6b	AA617266|ATF6beta|Creb-rp|Crebl1	activating transcription factor 6 beta	protein-coding	-0.990219700220919	-1.06815903705124	-1.24279257567618	-1.25136460524387	-1.2591314987605	-1.06589762089026	-1.24043020744747	-1.24983021604965	-1.18324435021495	0.700911767692951	1
Merged-chr13-119610806-2	chr13	119610706	119610906	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001039244)	TTS (NM_001039244)	-13013.0	NM_020279	56838.0	Mm.143745	NM_020279	ENSMUSG00000074715	Ccl28	CCK1|MEC|Scya28	chemokine (C-C motif) ligand 28	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128438703-2	chr2	128438603	128438803	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9352.0	NR_028590	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-148960436-2	chr3	148960336	148960536	+	921.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5801.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126876658-4	chr8	126876514	126876714	+	913.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27594.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-13540908-2	chr17	13540808	13541008	+	577.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045436, intron 2 of 4)	intron (NR_045436, intron 2 of 4)	13186.0	NR_045436	72578.0	Mm.46549	NR_045436	ENSMUSG00000038347	2700054A10Rik	-	RIKEN cDNA 2700054A10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-12233261-4	chr15	12233143	12233343	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356498, intron 3 of 15)	intron (NM_001356498, intron 3 of 15)	28215.0	NM_172958	268783.0	Mm.54460	NM_172958	ENSMUSG00000039458	Mtmr12	3Pap|4932703C11|C730015A02Rik|Pip3ap|mKIAA1682	myotubularin related protein 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118219064-2	chr11	118218964	118219164	+	626.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	-6322.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71056666-2	chr17	71056566	71056766	+	623.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083934, intron 10 of 36)	L1M4|LINE|L1	37109.0	NM_001083934	17929.0	Mm.4103	NM_010867	ENSMUSG00000024049	Myom1	D430047A17Rik	myomesin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47765519-2	chr17	47765407	47765607	+	627.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161723, intron 1 of 8)	intron (NM_001161723, intron 1 of 8)	-20237.0	NM_011549	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	1.19767165590166	1.02614999593663	1.30384833485095	1.1307153357223	0.942823509065815	0.814481211872894	1.55139507959704	1.67939658150166	0.590580261981455	0.653326746410185	0.986651124875732
Merged-chr9-100434473-1	chr9	100434373	100434573	+	695.0	f0_balb.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	52000.0	NM_001033543	213208.0	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-93821718-4	chr11	93821648	93821848	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	64018.0	NM_001013375	217109.0	Mm.379350	NM_001013375	ENSMUSG00000054079	Utp18	6230425C22Rik|6430513M13|Wdr50	UTP18 small subunit processome component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-83946721-4	chr10	83946626	83946826	+	971.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	153971.0	NR_152790	102637349.0	Mm.402869	NR_152790	ENSMUSG00000111049	Gm34184	-	predicted gene, 34184	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126706999-2	chr7	126706899	126707099	+	601.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-2183.0	NM_009898	12721.0	Mm.290482	NM_009898	ENSMUSG00000030707	Coro1a	Clabp|Lmb3|TACO|p57	coronin, actin binding protein 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95301534-3	chr3	95301433	95301633	+	733.805542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085383, intron 6 of 12)	intron (NM_001085383, intron 6 of 12)	5271.0	NM_001085383	71790.0	Mm.218844	NM_023628	ENSMUSG00000015702	Anxa9	1110003P15Rik|2310069F17Rik	annexin A9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191222761-2	chr1	191222685	191222885	+	651.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1669.0	NR_151547	100504360.0	Mm.16927	NM_001033188		D730003I15Rik	AU020850	RIKEN cDNA D730003I15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-103785952-4	chr2	103785856	103786056	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111292, intron 1 of 16)	intron (NM_001111292, intron 1 of 16)	11122.0	NM_001111290	53872.0	Mm.427589	NM_016739	ENSMUSG00000027184	Caprin1	AL022980|Caprin-1|Gpiap|Gpiap1|Mmgpip137|P137|rng105	cell cycle associated protein 1	protein-coding	4.62040452811019	3.65846486303001	4.64648421994845	4.52782325348446	4.68801570708151	3.97121694645423	4.58749360131824	4.59222924704913	0.0862612991328246	0.832110961983016	0.998431161219273
Merged-chr18-61478952-2	chr18	61478852	61479052	+	700.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045419, intron 1 of 3)	intron (NR_045419, intron 1 of 3)	5655.0	NR_045419	442846.0	Mm.417648	NR_045419		A530050N04Rik	-	RIKEN cDNA A530050N04 gene	ncRNA	0.350325215646857	0.373741865441709	0.366099957703142	1.01141664202606	0.635911670442372	0.375460704272462	0.965411107770482	1.01948200815943	1.17607465408601	0.524630793370448	1
Merged-chr5-130163879-3	chr5	130163771	130163971	+	882.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR41|LTR|ERVL	-7948.0	NM_001199059	56715.0	Mm.288639	NM_019983	ENSMUSG00000025340	Rabgef1	Rab5ef|Rabex5|Rin2	RAB guanine nucleotide exchange factor (GEF) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-84803130-2	chr2	84803030	84803230	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019949, intron 2 of 3)	intron (NM_019949, intron 2 of 3)	4302.0	NM_019949	56791.0	Mm.38261	NM_019949	ENSMUSG00000027078	Ube2l6	2810489I21Rik|RIG-B|UBCH8|Ubce8|Ubcm8	ubiquitin-conjugating enzyme E2L 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135256750-4	chr4	135256648	135256848	+	916.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013885, intron 1 of 5)	intron (NM_013885, intron 1 of 5)	16012.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-35022469-4	chr18	35022366	35022566	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68115.0	NM_010481	15526.0	Mm.209419	NM_010481	ENSMUSG00000024359	Hspa9	74kDa|Csa|Grp75|Hsc74|Hsp74|Hsp74a|Hspa9a|Mortalin|Mot-2|Mot2|Mthsp70|Pbp74	heat shock protein 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-49847490-4	chr11	49847370	49847570	+	644.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016961, intron 1 of 11)	intron (NM_016961, intron 1 of 11)	719.0	NM_016961	26420.0	Mm.68933	NM_016961	ENSMUSG00000020366	Mapk9	AI851083|JNK2|Prkm9|p54aSAPK	mitogen-activated protein kinase 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-128453702-4	chr8	128453589	128453789	+	962.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358959, intron 6 of 16)	intron (NM_001358959, intron 6 of 16)	94448.0	NR_035436	100316680.0		NR_035436	ENSMUSG00000084523	Mir1903	Mirn1903|mmu-mir-1903	microRNA 1903	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-48815653-2	chr11	48815553	48815753	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145377, intron 1 of 5)	intron (NM_145377, intron 1 of 5)	1738.0	NM_145377	211007.0	Mm.794	NM_145377	ENSMUSG00000040365	Trim41	AW552703|BC020156|R75223|RINCK	tripartite motif-containing 41	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28808398-4	chr7	28808303	28808503	+	954.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2487.0	NM_177301	15388.0	Mm.9043	NM_177301	ENSMUSG00000015165	Hnrnpl	C79783|D830027H13Rik|Hnrpl	heterogeneous nuclear ribonucleoprotein L	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-57603108-4	chr10	57603019	57603219	+	944.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28862.0	NM_008863	18768.0	Mm.262135	NM_008863	ENSMUSG00000019876	Pkib	Pkibeta|Prkacn2	protein kinase inhibitor beta, cAMP dependent, testis specific	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-123175539-6	chr6	123175477	123175677	+	878.2222289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004159, intron 2 of 5)	intron (NM_001004159, intron 2 of 5)	2554.0	NM_001004159	381809.0	Mm.333372	NM_001004159	ENSMUSG00000067767	Clec4b2	Aplra1|F830043G12Rik|mDCAR1	C-type lectin domain family 4, member b2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-60486103-4	chr3	60485976	60486176	+	987.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253713, intron 2 of 9)	intron (NM_001253713, intron 2 of 9)	13246.0	NM_001253713	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-90244118-4	chr15	90244026	90244226	+	895.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19766.0	NR_106106	102466838.0		NR_106106	ENSMUSG00000099319	Mir7648	Gm27736|mmu-mir-7648	microRNA 7648	ncRNA	3.3407661758536	2.89164541507058	1.38713375346778	2.77696245799036	1.27422862882349	2.09949637009895	1.10034839392316	1.06404499431541	-3.12025748576483	0.00385383660146009	0.0546122026113994
Merged-chr11-34007327-2	chr11	34007227	34007427	+	885.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_155520, intron 4 of 4)	intron (NR_155520, intron 4 of 4)	-14134.0	NM_001190886	70357.0	Mm.252514	NM_027398	ENSMUSG00000053519	Kcnip1	KCHIP1|Kchip1.2	Kv channel-interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-182290925-2	chr1	182290822	182291022	+	621.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A2|LTR|ERVL-MaLR	-8121.0	NM_007853	13244.0	Mm.29648	NM_007853	ENSMUSG00000038633	Degs1	AA536663|Degs|Des1|Mdes	delta(4)-desaturase, sphingolipid 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118877828-2	chr9	118877728	118877928	+	620.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 12 of 13)	intron (NM_001113514, intron 12 of 13)	-48708.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	-0.335151824451186	0.523012748795786	-0.325395837970454	-0.157309167966929	-0.181228475511506	-0.319591794733093	-0.324350062898446	-0.154373174762304	-2.02469874367964	0.382979180562994	1
Merged-chr1-72140786-2	chr1	72140686	72140886	+	741.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	71521.0	NM_001005423	381269.0	Mm.422636	NM_001005423	ENSMUSG00000039395	Mreg	Gm974|Wdt2|dsu	melanoregulin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85468876-4	chr12	85468757	85468957	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5033.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35869671-5	chr17	35869613	35869813	+	895.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146710, intron 2 of 3)	intron (NM_001146710, intron 2 of 3)	3098.0	NM_175242	76448.0	Mm.359982	NM_175242	ENSMUSG00000034595	Ppp1r18	2310014H01Rik|AA407849|AI450394	protein phosphatase 1, regulatory subunit 18	protein-coding	0.863109082054549	0.81592087389707	0.334371385736266	0.740145715749307	0.692121426919023	0.342115715018381	0.335764135152117	0.490575582138447	-1.53802895292922	0.392029917183242	1
Merged-chr11-54628526-4	chr11	54628447	54628647	+	943.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252494, intron 11 of 28)	intron (NM_001252494, intron 11 of 28)	32401.0	NM_001252497	192786.0	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-54971499-4	chr18	54971392	54971592	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175751, intron 2 of 9)	Lx5c|LINE|L1	18688.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-27217420-2	chr15	27217320	27217520	+	775.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-249257.0	NM_020332	11732.0	Mm.265264	NM_020332	ENSMUSG00000022265	Ank	Ankh|D15Ertd221e|ank|mKIAA1581	progressive ankylosis	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-94163256-5	chr6	94163143	94163343	+	884.5499880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_130996, intron 1 of 1)	intron (NR_130996, intron 1 of 1)	74199.0	NR_130996	78178.0	Mm.452749	NR_130996	ENSMUSG00000045095	4930511A08Rik	-	RIKEN cDNA 4930511A08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-172526053-2	chr1	172525953	172526153	+	707.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027972, intron 1 of 11)	L3b|LINE|CR1	4923.0	NM_027972	71870.0	Mm.78373	NM_027972	ENSMUSG00000026546	Cfap45	1700028D05Rik|Ccdc19|Nesg1	cilia and flagella associated protein 45	protein-coding	-0.616857593156788	-0.409246255244169	-0.429570785623083	-0.612183903999847	-0.616162586344117	-0.60488991811961	0.0793188484403307	-0.611691859738532	1.33957890940398	0.617368151852437	1
Merged-chr4-6225462-4	chr4	6225360	6225560	+	851.591675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34355.0	NM_026534	68053.0	Mm.404043	NM_026534	ENSMUSG00000028243	Ubxn2b	3110003A22Rik|6430407D20Rik|AI451665|p37	UBX domain protein 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-66004807-3	chr3	66004720	66004920	+	722.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46571.0	NM_001355432	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-121078030-4	chr7	121077919	121078119	+	949.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3489.0	NM_030691	80719.0	Mm.160384	NM_030691	ENSMUSG00000035004	Igsf6	-	immunoglobulin superfamily, member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-45738507-2	chr11	45738407	45738607	+	872.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69576.0	NR_045876	100009664.0	Mm.415439	NR_045876		F630206G17Rik	-	RIKEN cDNA F630206G17 gene	ncRNA	-1.7024385483431	-1.81249224917775	-1.82134771053534	-1.82862185015837	-1.70038292649591	-1.81057323376012	-1.81934302819017	-1.82731978264371	0.0376840119903864	0.991491645451152	1
Merged-chr3-20026709-3	chr3	20026585	20026785	+	949.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080634, intron 4 of 16)	intron (NM_080634, intron 4 of 16)	8625.0	NM_001146324	12807.0	Mm.291533	NM_080634	ENSMUSG00000027615	Hps3	coa	HPS3, biogenesis of lysosomal organelles complex 2 subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-108693573-2	chr12	108693473	108693673	+	761.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027299, intron 1 of 2)	intron (NM_027299, intron 1 of 2)	8733.0	NM_001171002	70059.0	Mm.207605	NM_027299	ENSMUSG00000021263	Degs2	2210008A03Rik|AI852933|DES2	delta(4)-desaturase, sphingolipid 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-146800537-2	chr5	146800437	146800637	+	803.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5581.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-155764136-4	chr2	155764039	155764239	+	976.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11203.0	NM_010808	17391.0	Mm.389325	NM_010808	ENSMUSG00000027612	Mmp24	AU040325|MMP-21|MT5-MMP|MT5MMP|MTMMP5	matrix metallopeptidase 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-33757801-4	chr1	33757697	33757897	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145392)	promoter-TSS (NM_145392)	-47.0	NM_145392	213539.0	Mm.247037	NM_145392	ENSMUSG00000042215	Bag2	2610042A13Rik|BC016230	BCL2-associated athanogene 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140759934-2	chr5	140759834	140760034	+	609.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_010302)	TTS (NM_010302)	35807.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-64735698-3	chr17	64735631	64735831	+	656.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008549, intron 19 of 21)	intron (NM_008549, intron 19 of 21)	-31380.0	NR_105051	101202683.0	Mm.393309	NR_105051		Dreh	-	down-regulated in hepatocellular carcinoma	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-31746982-2	chr2	31746882	31747082	+	650.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001283047, intron 2 of 11)	intron (NM_001283047, intron 2 of 11)	-12957.0	NM_009594	11350.0	Mm.1318	NM_009594	ENSMUSG00000026842	Abl1	AI325092|Abl|E430008G22Rik|c-Abl	c-abl oncogene 1, non-receptor tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135632635-4	chr5	135632548	135632748	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146002)	promoter-TSS (NM_146002)	-6.0	NM_001357037	215160.0	Mm.295438	NM_031398	ENSMUSG00000039917	Rhbdd2	0610011L13Rik|AI480532|Rhbdl7|Usmg1	rhomboid domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-91281372-3	chr6	91281267	91281467	+	661.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	68603.0	NM_007992	14115.0	Mm.249146	NM_007992	ENSMUSG00000064080	Fbln2	5730577E14Rik|FIBL-2	fibulin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107291110-4	chr9	107291078	107291278	+	925.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1301.0	NM_178907	102626.0	Mm.222612	NM_178907	ENSMUSG00000032577	Mapkapk3	3PK|AI874665|MAPKAP-K3|MAPKAP3|MK-3|MK3|MapkKapk3	mitogen-activated protein kinase-activated protein kinase 3	protein-coding	5.23235502220663	5.73330198624362	4.3969817073063	5.92499064518032	5.3641658138126	4.999063488638	3.52760219775302	5.30611305285842	-0.54284045025583	0.19571569357987	0.676843838846448
Merged-chr13-81396935-2	chr13	81396835	81397035	+	720.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 78 of 89)	intron (NM_054053, intron 78 of 89)	236209.0	NM_054053	110789.0	Mm.288694	NM_054053	ENSMUSG00000069170	Adgrv1	Frings|Gpr98|Mass1|Mgr1|VLGR1	adhesion G protein-coupled receptor V1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-32162262-2	chr17	32162162	32162362	+	621.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_008716, intron 2 of 32)	CpG	4590.0	NM_008716	18131.0	Mm.439741	NM_008716	ENSMUSG00000038146	Notch3	AW229011|N3|hpbk	notch 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-37496161-2	chr19	37496053	37496253	+	635.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	30899.0	NR_131009	78640.0	Mm.234265	NR_131008		1700122C19Rik	-	RIKEN cDNA 1700122C19 gene	ncRNA	0.511435133067929	0.271284800458581	0.265167630254918	0.419782835425411	0.253799950337481	0.759297126680054	0.716765147705226	0.78566695536333	2.00480296604182	0.281115128441999	1
Merged-chr11-97841248-4	chr11	97841151	97841351	+	819.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080935, intron 1 of 2)	intron (NM_001080935, intron 1 of 2)	471.0	NM_001080935	68127.0	Mm.110270	NM_001080935	ENSMUSG00000050538	B230217C12Rik	AI840637	RIKEN cDNA B230217C12 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-73301479-3	chr17	73301372	73301572	+	604.033325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR41|LTR|ERVL	97824.0	NM_001033444	381122.0	Mm.81496	NM_001033444	ENSMUSG00000043705	Capn13	CANP 13|Gm943	calpain 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101937407-2	chr11	101937307	101937507	+	613.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	GC_rich|Low_complexity|Low_complexity	-15014.0	NR_045806	73887.0	Mm.159084	NR_045806	ENSMUSG00000071818	4930417O22Rik	-	RIKEN cDNA 4930417O22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-55253648-4	chr9	55253566	55253766	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_032002, intron 3 of 7)	intron (NM_032002, intron 3 of 7)	29959.0	NM_032002	83961.0	Mm.443874	NM_032002	ENSMUSG00000032311	Nrg4	AI552600	neuregulin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-3235424-2	chr16	3235332	3235532	+	677.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TACTG)n|Simple_repeat|Simple_repeat	-356966.0	NM_146860	258859.0	Mm.377723	NM_146860	ENSMUSG00000051003	Olfr161	MOR131-1|OR912-47M6	olfactory receptor 161	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-113652436-2	chr5	113652336	113652536	+	681.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2046.0	NM_008153	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123460560-2	chr5	123460460	123460660	+	545.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	21541.0	NM_029594	76399.0	Mm.75049	NM_029594	ENSMUSG00000029437	Il31	1700013B14Rik	interleukin 31	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-126404912-2	chr6	126404812	126405012	+	599.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-76226.0	NR_045480	100038574.0	Mm.399353	NR_045480	ENSMUSG00000107623	Gm10415	-	predicted gene 10415	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-36612705-5	chr8	36612553	36612753	+	873.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001194940, intron 5 of 17)	intron (NM_001194940, intron 5 of 17)	1290.0	NM_015802	50768.0	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	0.954460080317446	0.824158173057681	0.319248775000804	0.313833387392781	0.306166768494867	0.692647026492315	0.32079545800731	0.861217064348449	-0.411793987782989	0.828371996281475	1
Merged-chr7-104408493-4	chr7	104408382	104408582	+	695.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009099)	TTS (NM_009099)	37643.0	NM_001357467	20128.0	Mm.295578	NM_009099	ENSMUSG00000030921	Trim30a	Rpt-1|Rpt1|Trim30	tripartite motif-containing 30A	protein-coding	2.07529208166863	2.75966285883734	2.1189801699375	1.74553044921821	1.83285473168656	2.58572872114817	1.59765118294787	2.83048099549194	0.204350217690536	0.823003339289821	0.998431161219273
Merged-chr7-5018611-2	chr7	5018511	5018711	+	728.25	f1_balb.idr|f1_c57bl6.idr	TTS (NM_025324)	TTS (NM_025324)	-1765.0	NM_001290426	319748.0	Mm.86607	NM_001033383	ENSMUSG00000074405	Zfp865	6430526N21Rik|Znf865	zinc finger protein 865	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-46468743-3	chr18	46468673	46468873	+	638.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2957.0	NR_045438	72076.0	Mm.82766	NM_028086		Mospd4	2010013H21Rik	motile sperm domain containing 4	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-8089059-2	chr11	8088959	8089159	+	626.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	575476.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	-0.938290465227035	-0.441504994078113	-0.932656635401405	-0.772252202801329	-0.937768990199934	-0.920934199722792	-0.932049059015755	-0.769630825588121	-1.86227839688779	0.519061847484075	1
Merged-chr5-110655668-2	chr5	110655568	110655768	+	752.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_027156, exon 7 of 15)	exon (NM_027156, exon 7 of 15)	2217.0	NM_027156	69663.0	Mm.5267	NM_027156	ENSMUSG00000029504	Ddx51	2310061O04Rik|AA537002|C81583|R75505	DEAD (Asp-Glu-Ala-Asp) box polypeptide 51	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111427070-2	chr12	111426970	111427170	+	789.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289487, intron 9 of 13)	B2_Mm1t|SINE|B2	9625.0	NM_001289488	74190.0	Mm.248640	NM_028807	ENSMUSG00000021280	Exoc3l4	1200009I06Rik|1600013K19Rik	exocyst complex component 3-like 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81523165-4	chr10	81523074	81523274	+	883.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010304, intron 1 of 6)	ID_B1|SINE|B4	1051.0	NM_010304	14676.0	Mm.1546	NM_010304	ENSMUSG00000034792	Gna15	G[a]15|Galpha15	guanine nucleotide binding protein, alpha 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120714801-2	chr11	120714701	120714901	+	732.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347611)	promoter-TSS (NM_001347611)	848.0	NM_153545	217366.0	Mm.347545	NM_153545	ENSMUSG00000025145	Lrrc45	BC023296	leucine rich repeat containing 45	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-8836776-3	chr16	8836666	8836866	+	744.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081400, intron 2 of 3)	intron (NM_001081400, intron 2 of 3)	6666.0	NM_001081400	69053.0	Mm.390868	NM_001081400	ENSMUSG00000022507	1810013L24Rik	1110017P05Rik|3010002C02Rik|AA792997|AW124177|Gm19906|R74903	RIKEN cDNA 1810013L24 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-108935796-2	chr7	108935696	108935896	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025344, intron 1 of 7)	intron (NM_025344, intron 1 of 7)	1381.0	NM_025344	66085.0	Mm.182962	NM_025344	ENSMUSG00000031029	Eif3f	0610037M02Rik|AA409853|Eif3s5	eukaryotic translation initiation factor 3, subunit F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-7245949-2	chr4	7245852	7246052	+	763.200012	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-255229.0	NM_145711	252838.0	Mm.435828	NM_145711	ENSMUSG00000041272	Tox	1700007F02Rik	thymocyte selection-associated high mobility group box	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-120186291-2	chr6	120186191	120186391	+	574.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016718, intron 1 of 3)	intron (NM_016718, intron 1 of 3)	-7532.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-86929954-1	chr2	86929854	86930054	+	636.0	f1_balb.idr	Intergenic	Lx2|LINE|L1	-6424.0	NM_146845	258842.0	Mm.389311	NM_146845	ENSMUSG00000075169	Olfr1098	MOR206-1	olfactory receptor 1098	protein-coding	-0.341548005186802	-0.461950676844805	-0.465207319575118	-0.0758052411959477	-0.337922102115331	-0.461213633920307	-0.464490881199752	-0.0703859597097778	0.0318375429219428	0.989636970963125	1
Merged-chr8-46139162-2	chr8	46139062	46139262	+	645.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15016.0	NM_207213	102141.0	Mm.267258	NM_207213	ENSMUSG00000038291	Snx25	AI661919|Gm1699|Gm173|Sbbi31	sorting nexin 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-83065455-3	chr13	83065353	83065553	+	834.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-367120.0	NR_039537	100628621.0		NR_039537	ENSMUSG00000106655	Mir3961	mmu-mir-3961	microRNA 3961	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-84246414-4	chr15	84246298	84246498	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133167, intron 1 of 12)	intron (NM_133167, intron 1 of 12)	14355.0	NM_133167	170736.0	Mm.323892	NM_133167	ENSMUSG00000022438	Parvb	AI595373|AW742462|D15Gsk1|affixin	parvin, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-8878989-4	chr10	8878897	8879097	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 1 of 19)	B1F|SINE|Alu	7073.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	3.06023847666674	1.98124398014583	3.59124130377746	2.34167471841391	2.23383467917752	2.6558865049266	2.6804888905168	1.37739956966343	-1.10161394306478	0.201139802063866	0.685719457803258
Merged-chr1-172334373-2	chr1	172334273	172334473	+	736.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5051.0	NM_001360808	16524.0	Mm.261168	NM_008429	ENSMUSG00000038026	Kcnj9	1700085N21Rik|Girk3|Kir3.3|mbGIRK3	potassium inwardly-rectifying channel, subfamily J, member 9	protein-coding	1.79233166807389	2.65601491116077	1.29537191208904	1.5145603043731	2.46324861576666	2.19072927674982	2.48446454048021	2.89004062478747	1.38518778214974	0.142302559497456	0.588875411192391
Merged-chr11-78165571-4	chr11	78165462	78165662	+	969.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009423)	promoter-TSS (NM_009423)	-12.0	NM_009423	22032.0	Mm.390418	NM_009423	ENSMUSG00000017386	Traf4	A530032M13Rik|CART1|msp2	TNF receptor associated factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-36947124-3	chr11	36947032	36947232	+	795.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2891.0	NM_011856	23964.0	Mm.439889	NM_011856	ENSMUSG00000049336	Tenm2	Odz2|Odz3|Ten-2|Ten-m2	teneurin transmembrane protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5606421-2	chr17	5606321	5606521	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	113821.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-99219962-2	chr5	99219863	99220063	+	547.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_181318, intron 13 of 13)	PB1D10|SINE|Alu	32964.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36304553-4	chr18	36304461	36304661	+	912.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4460.0	NM_001267796	109169.0	Mm.426423	NM_001267796	ENSMUSG00000110185	Igip	6330403M23Rik	IgA inducing protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-67194323-4	chr17	67194243	67194443	+	958.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	160116.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	2.78985852268766	3.73687759542462	3.51530244193507	4.0059560625586	4.72349784495819	4.900308055948	3.95342952091487	3.9007537265045	1.18194332077655	0.0175377883977141	0.162610807724709
Merged-chr18-11837060-4	chr18	11836966	11837166	+	820.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045421, intron 1 of 3)	intron (NR_045421, intron 1 of 3)	-2208.0	NM_001146287	63955.0	Mm.40717	NM_022021	ENSMUSG00000040957	Cables1	Cables|ik3-1	CDK5 and Abl enzyme substrate 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-101914284-4	chr13	101914130	101914330	+	853.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-146013.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-17854707-4	chr5	17854606	17854806	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159558, intron 1 of 15)	intron (NM_001159558, intron 1 of 15)	-4914.0	NM_001159556	12491.0	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 molecule	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-135485585-4	chr3	135485462	135485662	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027288)	promoter-TSS (NM_027288)	-49.0	NM_027288	110173.0	Mm.280536	NM_027288	ENSMUSG00000028164	Manba	2410030O07Rik|B930014J03Rik|Bmn	mannosidase, beta A, lysosomal	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129801523-4	chr2	129801411	129801611	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029452)	promoter-TSS (NR_029452)	-52.0	NR_029452	654409.0	Mm.305555	NR_029452		Stk35os1	4932416H05Rik	serine/threonine kinase 35, opposite strand 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-81238140-4	chr13	81238037	81238237	+	977.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 85 of 89)	intron (NM_054053, intron 85 of 89)	274063.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-54818649-2	chr13	54818549	54818749	+	585.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29244.0	NM_028841	74257.0	Mm.32883	NM_028841	ENSMUSG00000025875	Tspan17	2210021G21Rik|AI047581|Fbxo23|Tm4sf17	tetraspanin 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-30745275-2	chr14	30745175	30745375	+	669.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166531, intron 2 of 21)	intron (NM_001166531, intron 2 of 21)	29660.0	NM_001166532	54650.0	Mm.294662	NM_019460	ENSMUSG00000006527	Sfmbt1	4930442N21Rik|9330180L21Rik|AA536974|Sfmbt|Smr	Scm-like with four mbt domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-136116036-2	chr4	136115935	136116135	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27787.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	0.338086537996861	-0.021816590981951	0.643353998659946	-0.0313401985451183	-0.0372065691911017	-0.0206053635088795	-0.026005729761552	0.509512097003805	-0.968637627040791	0.669457256169054	1
Merged-chr19-28918758-2	chr19	28918658	28918858	+	720.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-45162.0	NM_028922	74411.0	Mm.441887	NM_028922	ENSMUSG00000040105	Plpp6	4932443D16Rik|Ppapdc2	phospholipid phosphatase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-69320944-4	chr10	69320842	69321042	+	970.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31970.0	NM_007659	12534.0	Mm.281367	NM_007659	ENSMUSG00000019942	Cdk1	Cdc2|Cdc2a|p34<CDC2>	cyclin-dependent kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-136891534-4	chr2	136891461	136891661	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001141946)	promoter-TSS (NM_001141946)	-33.0	NR_149746	74243.0	Mm.330612	NM_028201	ENSMUSG00000027281	Slx4ip	2210009G21Rik|2410004I22Rik|C85661|Slxip	SLX4 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-35769495-4	chr16	35769385	35769585	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175111)	promoter-TSS (NM_175111)	-129.0	NM_153550	224132.0	Mm.24094	NM_153550	ENSMUSG00000022848	Dirc2	RCC4	disrupted in renal carcinoma 2 (human)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-34742850-1	chr2	34742750	34742950	+	606.0	f0_c57.idr	intron (NR_151469, intron 2 of 26)	RSINE1|SINE|B4	12382.0	NM_001356441	66691.0	Mm.156452	NM_025709	ENSMUSG00000026867	Gapvd1	2010005B09Rik|4432404J10Rik|AW108497|Gapex-5|RAP6|RME-6|mKIAA1521	GTPase activating protein and VPS9 domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85335612-2	chr12	85335512	85335712	+	756.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145138, intron 2 of 21)	intron (NM_145138, intron 2 of 21)	3750.0	NM_145138	217718.0	Mm.29071	NM_145138	ENSMUSG00000034290	Nek9	C130021H08Rik	NIMA (never in mitosis gene a)-related expressed kinase 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-145813023-4	chr2	145812908	145813108	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028724, intron 2 of 12)	intron (NM_028724, intron 2 of 12)	26892.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-109425816-4	chr11	109425708	109425908	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025275)	promoter-TSS (NM_025275)	-138.0	NM_025275	13929.0	Mm.211850	NM_025275	ENSMUSG00000020610	Amz2	AA408420|ESTM12|X83328	archaelysin family metallopeptidase 2	protein-coding	7.55511019570017	6.86665127764385	7.45356426369554	7.47384642310299	7.75794649616512	7.26466843575359	7.97418100471315	7.44935254049679	0.284263836267715	0.12838027660745	0.560434845999582
Merged-chr12-108937691-4	chr12	108937591	108937791	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177602, intron 2 of 6)	intron (NM_177602, intron 2 of 6)	43419.0	NM_177602	212198.0	Mm.342082	NM_177602	ENSMUSG00000040877	Wdr25	B930090D16Rik	WD repeat domain 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-4080201-2	chr7	4080101	4080301	+	889.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_033568, intron 6 of 8)	RMER17D2|LTR|ERVK	-16997.0	NM_001302676	52855.0	Mm.290880	NM_178611	ENSMUSG00000055541	Lair1	5133400O11Rik|BB115266|D7Bwg0421e|Lair-1	leukocyte-associated Ig-like receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-57259960-4	chr16	57259873	57260073	+	878.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28507.0	NM_001358433	67581.0	Mm.257819	NM_026254	ENSMUSG00000022749	Tbc1d23	4930451A13Rik|AU015720|AU043671|AU043778|D030022P07Rik|W51689	TBC1 domain family, member 23	protein-coding	-0.208283783115327	-0.190719793063729	-0.196438776803222	0.56960718211407	-0.207177803637276	-0.189435193761239	-0.195174548196752	0.578527616610749	0.0282038014051437	0.990994131209618	1
Merged-chr12-117765027-4	chr12	117764924	117765124	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-78837.0	NM_146040	217946.0	Mm.281149	NM_146040	ENSMUSG00000021175	Cdca7l	BC006933|JPO2	cell division cycle associated 7 like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-9411228-2	chr14	9411128	9411328	+	597.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-472867.0	NR_030680	100042415.0	Mm.235938	NR_030680	ENSMUSG00000089686	Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-149118771-2	chr3	149118683	149118883	+	707.5	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-155954.0	NR_040591	381482.0	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA	-1.43172712806865	-1.3992492906874	-1.40907085678131	-1.41713858359971	-0.932192548427885	-1.39712091634321	-1.40684746950024	-1.41569446435649	2.19283191591698	0.528233640655333	1
Merged-chr17-45751624-2	chr17	45751544	45751744	+	574.5	f0_balb.idr|f1_balb.idr	intron (NR_152153, intron 2 of 4)	B2_Mm2|SINE|B2	17138.0	NR_152153	433111.0	Mm.213441	NR_152153	ENSMUSG00000097727	F630040K05Rik	-	RIKEN cDNA F630040K05 gene	ncRNA	-2.05752322593321	-2.15521190974092	-2.16307242109104	-2.16952927915413	-2.17938029103484	-2.15350850414045	-2.16129297361887	-2.16837350464794	-0.683654500252594	0.846597994014493	1
Merged-chr10-13008388-4	chr10	13008295	13008495	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175102)	promoter-TSS (NM_175102)	-55.0	NM_175102	66125.0	Mm.29743	NM_175102	ENSMUSG00000078348	Sf3b5	10kDa|1110005L13Rik|AU043053|Sf3b10	splicing factor 3b, subunit 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-43655053-4	chr6	43654953	43655153	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013861, intron 2 of 8)	intron (NM_013861, intron 2 of 8)	11225.0	NM_013861	29807.0	Mm.320979	NM_013861	ENSMUSG00000029735	Tpk1	-	thiamine pyrophosphokinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75139472-2	chr11	75139372	75139572	+	746.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001002764, intron 14 of 18)	intron (NM_001002764, intron 14 of 18)	28680.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-68748483-4	chr7	68748469	68748669	+	992.142822	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042592, intron 1 of 7)	intron (NM_001042592, intron 1 of 7)	669.0	NM_001042592	66412.0	Mm.251199	NM_025549	ENSMUSG00000042659	Arrdc4	2410003C09Rik|AV216361	arrestin domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167266021-2	chr2	167265921	167266121	+	607.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25484.0	NM_008968	19223.0	Mm.2339	NM_008968	ENSMUSG00000017969	Ptgis	Cyp8|Cyp8a1|Pgis	prostaglandin I2 (prostacyclin) synthase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96561418-2	chr3	96561318	96561518	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_023719, exon 8 of 8)	3' UTR (NM_023719, exon 8 of 8)	3461.0	NM_001009935	56338.0	Mm.410189	NM_023719	ENSMUSG00000038393	Txnip	1200008J08Rik|AA682105|Hyplip1|THIF|Tbp-2|VDUP1	thioredoxin interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165321006-4	chr2	165320914	165321114	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302752)	promoter-TSS (NM_001302752)	-188.0	NM_001302752	140579.0	Mm.35064	NM_080287	ENSMUSG00000017670	Elmo2	1190002F24Rik|CED-12	engulfment and cell motility 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120669697-2	chr8	120669597	120669797	+	890.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009941, intron 2 of 4)	intron (NM_009941, intron 2 of 4)	1377.0	NM_001293559	12857.0	Mm.386758	NM_009941	ENSMUSG00000031818	Cox4i1	AL024441|COX|COX IV-1|COXIV|Cox4|Cox4a|IV-1	cytochrome c oxidase subunit 4I1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-103172318-4	chr11	103172227	103172427	+	739.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019679, intron 1 of 26)	intron (NM_019679, intron 1 of 26)	1189.0	NM_019679	57778.0	Mm.138913	NM_019679	ENSMUSG00000055805	Fmnl1	8030453N10Rik|AI553564|Fmnl|Fnrl|Frls	formin-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-68156775-2	chr18	68156675	68156875	+	879.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172631, intron 3 of 5)	intron (NM_172631, intron 3 of 5)	-71171.0	NM_001357444	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-34787562-4	chr12	34787444	34787644	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271386, intron 3 of 27)	intron (NM_001271386, intron 3 of 27)	129551.0	NM_001271386	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	2.51557428017684	1.90650419800014	1.6357613024431	2.56339495747695	1.72336633348249	2.64834789502829	2.98666515563573	2.37402158999647	0.633323269357484	0.472132520259675	0.926125823511231
Merged-chr15-50345814-2	chr15	50345714	50345914	+	554.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	543235.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-48813340-3	chr11	48813264	48813464	+	748.766663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145377, intron 1 of 5)	intron (NM_145377, intron 1 of 5)	4027.0	NM_145377	211007.0	Mm.794	NM_145377	ENSMUSG00000040365	Trim41	AW552703|BC020156|R75223|RINCK	tripartite motif-containing 41	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-8691794-1	chr11	8691694	8691894	+	896.0	f1_balb.idr	Intergenic	Intergenic	-27259.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111456058-4	chr12	111455970	111456170	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13409.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-24991260-2	chr19	24991160	24991360	+	645.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-8269.0	NM_028785	76088.0	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	2.3630314640547	1.11196488959531	1.95914470948514	1.48228728071116	2.38387218345111	1.11719536331775	1.97553601232893	1.48956222435974	0.0400157917459447	0.972462542080414	0.998431161219273
Merged-chr3-8632014-4	chr3	8631912	8632112	+	957.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153352, intron 2 of 2)	intron (NR_153352, intron 2 of 2)	3961.0	NR_153352	102635065.0		NR_153352	ENSMUSG00000104102	Gm32496	-	predicted gene, 32496	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-69507574-4	chr12	69507479	69507679	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1I|LTR|ERVL-MaLR	-32029.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	5.10876345927304	6.03911821745773	4.2532741357894	5.36789111125004	4.5985366321761	5.14457626937778	3.99383199550584	4.85302833597667	-0.740378522099162	0.0682572530690071	0.392092493930074
Merged-chr4-86396879-4	chr4	86396788	86396988	+	918.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029967, intron 22 of 27)	intron (NM_029967, intron 22 of 27)	161415.0	NM_001081096	75811.0	Mm.56451	NM_001081096	ENSMUSG00000028492	Saxo1	4930500O09Rik|Fam154a	stabilizer of axonemal microtubules 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131018622-5	chr1	131018484	131018684	+	930.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1261.0	NM_010548	16153.0	Mm.874	NM_010548	ENSMUSG00000016529	Il10	CSIF|Il-10	interleukin 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-53592514-4	chr6	53592432	53592632	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172728, intron 1 of 6)	intron (NM_172728, intron 1 of 6)	19158.0	NM_172728	231991.0	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	4.03527743647519	4.03706721432881	4.51997173641128	4.66668202255613	4.52286567334546	4.69553507827054	4.97177967787077	4.32091217491812	0.382070003303658	0.325701110125776	0.827782420413875
Merged-chr14-54642523-2	chr14	54642416	54642616	+	799.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_105913)	TTS (NR_105913)	594.0	NR_105913	102466771.0		NR_105913	ENSMUSG00000106169	Mir6948	mmu-mir-6948	microRNA 6948	ncRNA	1.10991123808816	0.921328291270845	0.551155647160381	0.544559246092432	1.03069689931211	0.561582293062866	1.14387715082686	0.98727246181936	0.720763412770042	0.657082231947728	1
Merged-chr3-103858252-3	chr3	103858119	103858319	+	897.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-1576.0	NR_104070	19260.0	Mm.395	NM_008979	ENSMUSG00000027843	Ptpn22	70zpep|PEP|Ptpn8	protein tyrosine phosphatase, non-receptor type 22 (lymphoid)	protein-coding	3.17173227149557	3.62154036975617	3.50551294325768	2.88576280895325	2.86053215742636	3.57091536055424	3.10173579976339	2.65662261704503	-0.395336076548729	0.517250712241158	0.947641799425091
Merged-chr6-118066335-3	chr6	118066233	118066433	+	958.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027526)	promoter-TSS (NM_027526)	-52.0	NM_027526	70727.0	Mm.87660	NM_027526	ENSMUSG00000030134	Rasgef1a	6330404M18Rik|AI835194	RasGEF domain family, member 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-93489287-2	chr10	93489151	93489351	+	867.2666630000001	f1_balb.idr|f1_c57bl6.idr	exon (NM_010401, exon 1 of 20)	exon (NM_010401, exon 1 of 20)	483.0	NM_010401	15109.0	Mm.13000	NM_010401	ENSMUSG00000020017	Hal	Hsd|his|histidase	histidine ammonia lyase	protein-coding	1.49001265916127	0.59711311185484	1.08382552023896	1.16220519313155	0.731151007952175	0.599406296894574	0.589142244365717	1.16990240303027	-1.57013248745156	0.32338823035648	0.826237646468706
Merged-chr4-102609855-3	chr4	102609767	102609967	+	788.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	20024.0	NM_001177981	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	0.816865401786448	0.574619444691387	1.13301718786812	0.863731046998592	0.823914855279058	0.576429467248876	1.02976568649639	1.09959409487959	0.19026428764026	0.900656128279594	1
Merged-chr1-74303171-4	chr1	74303095	74303295	+	845.9895630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027154, intron 1 of 11)	intron (NM_027154, intron 1 of 11)	1141.0	NM_027154	69660.0	Mm.261182	NM_027154	ENSMUSG00000006301	Tmbim1	2310061B02Rik|AA960455|AU024746|C78899|RECS1|Tmbib1|mKIAA4161	transmembrane BAX inhibitor motif containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-110393972-2	chr13	110393872	110394072	+	750.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-1072.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-117028474-4	chr13	117028364	117028564	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2948.0	NM_001081009	52552.0	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118840794-2	chr9	118840694	118840894	+	940.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 6 of 13)	LTR16C|LTR|ERVL	-85742.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-100152460-2	chr15	100152360	100152560	+	690.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159361, intron 5 of 37)	intron (NM_001159361, intron 5 of 37)	-1936.0	NM_172819	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-103849021-4	chr2	103848923	103849123	+	844.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38401.0	NR_040514	78031.0	Mm.243867	NR_040514	ENSMUSG00000086687	4930547E08Rik	-	RIKEN cDNA 4930547E08 gene	ncRNA	2.28047502912401	2.19630247625272	1.82018798284183	2.0701916956984	2.20480732091561	2.66542245701586	2.26892146742622	2.08014047761805	0.54164989204523	0.525457586400714	0.948340152465298
Merged-chr7-67526370-2	chr7	67526270	67526470	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_028144, intron 8 of 8)	Lx8|LINE|L1	118866.0	NM_175124	67867.0	Mm.31247	NM_027413	ENSMUSG00000030556	Lrrc28	1300004K21Rik|2210012C09Rik|2310058O11Rik	leucine rich repeat containing 28	protein-coding	2.03378666438386	1.18382084001719	2.21128094528127	1.14303794937035	1.95975895780747	2.08907318733531	1.89347808286648	1.95437957264209	0.624688371835227	0.57047496657453	0.962718661854691
Merged-chr9-102879714-4	chr9	102879616	102879816	+	995.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042607, intron 6 of 14)	intron (NM_001042607, intron 6 of 14)	44796.0	NM_001284258	20187.0	Mm.335391	NM_013649	ENSMUSG00000032547	Ryk	AW536699|ERK-3|Vik	receptor-like tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-107516895-4	chr7	107516791	107516991	+	934.587524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021889, intron 6 of 6)	Lx8|LINE|L1	-50542.0	NM_172907	244198.0	Mm.77425	NM_172907	ENSMUSG00000051041	Olfml1	6720478C22|AV321997|BC047207|MVAL564|ONT2|mONT2	olfactomedin-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41455240-4	chr19	41455154	41455354	+	824.366699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-69998.0	NM_001326287	627352.0	Mm.395111	NM_001326287		Morf4l1b	EG627352|Gm6747	mortality factor 4 like 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-22813497-4	chr14	22813400	22813600	+	999.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028275, intron 5 of 6)	intron (NM_028275, intron 5 of 6)	-270702.0	NR_046307	74896.0	Mm.444661	NR_046307	ENSMUSG00000114412	4930405A10Rik	4930456G20Rik	RIKEN cDNA 4930405A10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-129396376-2	chr6	129396276	129396476	+	903.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001204239)	promoter-TSS (NM_001204239)	-921.0	NM_001204253	56760.0	Mm.30700	NM_019985	ENSMUSG00000030159	Clec1b	1810061I13Rik|Clec-2|Clec2	C-type lectin domain family 1, member b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107580692-4	chr9	107580594	107580794	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019750)	promoter-TSS (NM_019750)	25.0	NM_019750	56441.0	Mm.10305	NM_019750	ENSMUSG00000079334	Nat6	AI225910|Fus2	N-acetyltransferase 6	protein-coding	3.28788917174138	2.69804403280059	2.42968322599072	3.66339450759152	3.99870798748518	3.70652766945553	2.91101809068515	3.61798270322459	0.785342592720451	0.200463980217096	0.684238776668547
Merged-chr3-88950086-4	chr3	88950003	88950203	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_022994, exon 1 of 13)	5' UTR (NM_022994, exon 1 of 13)	179.0	NM_022994	65111.0	Mm.29028	NM_022994	ENSMUSG00000068921	Dap3	4921514D13Rik|DAP-3|MRP-S29|S29mt	death associated protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90440661-2	chr2	90440561	90440761	+	780.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001135657, exon 22 of 26)	exon (NM_001135657, exon 22 of 26)	38513.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-60004298-2	chr10	60004198	60004398	+	733.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199187, intron 1 of 10)	(T)n|Simple_repeat|Simple_repeat	971.0	NM_001199187	69090.0	Mm.155839	NM_026937	ENSMUSG00000044475	Ascc1	1810015P09Rik|AI550520|ASC1p50|CGI-18	activating signal cointegrator 1 complex subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-137707519-1	chr4	137707419	137707619	+	578.0	f1_c57bl6.idr	promoter-TSS (NM_001331215)	promoter-TSS (NM_001331215)	14.0	NM_001331215	110351.0	Mm.180763	NM_029563	ENSMUSG00000041351	Rap1gap	1300019I11Rik|2310004O14Rik|AI427470|ARPP-90|Gap|Rap1GAP1|Rap1ga1	Rap1 GTPase-activating protein	protein-coding	-2.18138529563533	-2.15523716995652	-2.1631445789866	-2.16963996020037	-2.05513010215571	-2.15352360143315	-2.16135451490766	-2.16847729006863	0.759018020146679	0.829933115115583	1
Merged-chr17-34945084-2	chr17	34944984	34945184	+	680.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	5924.0	NR_028527	100217427.0		NR_028527	ENSMUSG00000093009	Snord52	MBII-297	small nucleolar RNA, C/D box 52	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90543300-1	chr2	90543200	90543400	+	548.0	f0_balb.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	37347.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-8518605-1	chr10	8518505	8518705	+	1000.0	f1_c57bl6.idr	5' UTR (NM_177387, exon 1 of 8)	5' UTR (NM_177387, exon 1 of 8)	220.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41403474-2	chr19	41403374	41403574	+	670.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18404.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100622924-4	chr11	100622827	100623027	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028024)	promoter-TSS (NM_028024)	-28.0	NM_028024	71966.0	Mm.274734	NM_028024	ENSMUSG00000017837	Nkiras2	2410003M04Rik|4930527H08Rik|D630018G21Rik|KBRAS2	NFKB inhibitor interacting Ras-like protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-91680265-2	chr6	91680165	91680365	+	827.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3802.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-137528909-2	chr5	137528809	137529009	+	799.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_031408)	TTS (NM_031408)	685.0	NR_105846	102465227.0		NR_105846	ENSMUSG00000098597	Mir6418	Gm27629|mir-6418|mmu-mir-6418	microRNA 6418	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-77115763-2	chr8	77115663	77115863	+	594.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083906, intron 3 of 8)	intron (NM_001083906, intron 3 of 8)	213255.0	NM_001083906	110784.0	Mm.324393	NM_001083906	ENSMUSG00000031618	Nr3c2	MR|Mlr	nuclear receptor subfamily 3, group C, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-61135385-4	chr10	61135273	61135473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009163, intron 2 of 14)	intron (NM_009163, intron 2 of 14)	12311.0	NM_009163	20397.0	Mm.412319	NM_009163	ENSMUSG00000020097	Sgpl1	AI428538|D10Xrf456|S1PL|Spl	sphingosine phosphate lyase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-88281259-2	chr1	88281159	88281359	+	673.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3680.0	NM_198652	381280.0	Mm.384762	NM_198652	ENSMUSG00000044783	Hjurp	6430706D22Rik|A730008H23Rik|C330011F01Rik|Gm975|Mfleg1	Holliday junction recognition protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-121028883-4	chr4	121028782	121028982	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10684.0	NM_007741	12840.0	Mm.269384	NM_007741	ENSMUSG00000028626	Col9a2	AI427499|Col9a-2	collagen, type IX, alpha 2	protein-coding	-1.50521573392704	-1.47308608574264	-1.32992105947561	-1.33790229361015	-1.50296029203223	-1.4709805293264	-1.32772150873953	-1.48935495358987	-0.740724393039831	0.817430434688735	1
Merged-chr13-55028588-3	chr13	55028515	55028715	+	746.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011307, exon 15 of 15)	exon (NM_011307, exon 15 of 15)	-7230.0	NM_001033245	212032.0	Mm.267479	NM_001033245	ENSMUSG00000025877	Hk3	HK III|HK-III	hexokinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-89445362-3	chr7	89445265	89445465	+	837.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	19059.0	NR_102276	101521.0	Mm.26902	NR_102276	ENSMUSG00000109311	AI314278	-	expressed sequence AI314278	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-107505251-3	chr8	107505149	107505349	+	933.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025830, intron 6 of 23)	intron (NM_025830, intron 6 of 23)	-45995.0	NR_029553	387158.0		NR_029553	ENSMUSG00000065439	Mir140	Mirn140|mir-140|mmu-mir-140	microRNA 140	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-145304359-1	chr7	145304259	145304459	+	1000.0	f1_balb.idr	intron (NM_145379, intron 2 of 2)	intron (NM_145379, intron 2 of 2)	3450.0	NM_145379	211577.0	Mm.215151	NM_145379	ENSMUSG00000031070	Mrgprf	BC019711|Mgrc|MrgF	MAS-related GPR, member F	protein-coding	-0.377164737852336	-0.0285976903429828	-0.369561668871235	-0.0843913196805947	0.164836122342749	-0.364989154817764	-0.368740487976467	-0.371927939298678	-0.0170956595403357	0.994629827083033	1
Merged-chr12-79140984-4	chr12	79140876	79141076	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009705, intron 2 of 7)	intron (NM_009705, intron 2 of 7)	10188.0	NM_009705	11847.0	Mm.3506	NM_009705	ENSMUSG00000021125	Arg2	AII|AU022422	arginase type II	protein-coding	6.21853328238378	6.24896031117739	6.9602862582104	5.83175219010615	6.66539886156594	7.4383311299595	7.0423953682785	7.27173505515889	0.803054424061149	0.000882581003886514	0.0174970063935582
Merged-chr3-65927915-4	chr3	65927813	65928013	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30336.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-158019785-2	chr3	158019685	158019885	+	934.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001093752, intron 6 of 12)	intron (NM_001093752, intron 6 of 12)	11987.0	NM_001356997	69207.0	Mm.223946	NM_026989	ENSMUSG00000055436	Srsf11	0610009J05Rik|2610019N13Rik|BF642805|Sfrs11	serine/arginine-rich splicing factor 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-59041754-2	chr19	59041651	59041851	+	775.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114312, intron 4 of 16)	intron (NM_001114312, intron 4 of 16)	34318.0	NM_175172	71653.0	Mm.37338	NM_175172	ENSMUSG00000041362	Shtn1	4930506M07Rik|Shootin1|mKIAA1598	shootin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-122807268-4	chr10	122807158	122807358	+	975.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110218, intron 3 of 9)	intron (NM_001110218, intron 3 of 9)	127943.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-119049165-2	chr10	119049065	119049265	+	726.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_152787, intron 2 of 3)	RLTR30D2_MM|LTR|ERV1	1334.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-100224619-2	chr15	100224519	100224719	+	870.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3240.0	NM_007497	11908.0	Mm.676	NM_007497	ENSMUSG00000023027	Atf1	-	activating transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99047562-2	chr7	99047462	99047662	+	577.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 6 of 14)	intron (NM_178635, intron 6 of 14)	93582.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45467908-2	chr7	45467808	45468008	+	697.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1010.0	NM_007527	12028.0	Mm.19904	NM_007527	ENSMUSG00000003873	Bax	-	BCL2-associated X protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21411837-4	chr9	21411796	21411996	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021888)	promoter-TSS (NM_021888)	59.0	NM_021888	60507.0	Mm.436579	NM_021888	ENSMUSG00000002825	Qtrt1	2610028E17Rik|Tgt	queuine tRNA-ribosyltransferase catalytic subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-25608695-2	chr14	25608595	25608795	+	562.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 6 of 23)	intron (NM_183208, intron 6 of 23)	5182.0	NM_001309430	100188919.0	Mm.473810	NM_001309430		Gm45915	Israa	predicted gene, 45915	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-21694739-4	chr16	21694647	21694847	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001001881)	promoter-TSS (NM_001001881)	-82.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83304040-2	chr11	83303940	83304140	+	638.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_027915, intron 1 of 20)	intron (NM_027915, intron 1 of 20)	1343.0	NM_001035854	71770.0	Mm.39053	NM_027915	ENSMUSG00000035152	Ap2b1	1300012O03Rik|AI788979|AP105B	adaptor-related protein complex 2, beta 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-13677673-4	chr8	13677572	13677772	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009025)	promoter-TSS (NM_009025)	-85.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-16591690-4	chr12	16591588	16591788	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355598, intron 1 of 20)	intron (NM_001355598, intron 1 of 20)	-1918.0	NM_172950	14245.0	Mm.153625	NM_015763	ENSMUSG00000020593	Lpin1	Lipin1|fld	lipin 1	protein-coding	5.51188738380665	5.46745838948067	4.68823988037241	5.13879272864317	6.44622505093922	6.40188472214853	5.99213046536428	5.71387077987295	1.03982684950905	0.000244072369601892	0.00629308085347458
Merged-chr10-89873262-2	chr10	89873175	89873375	+	624.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001128086)	promoter-TSS (NM_001128086)	-234.0	NM_001359240	77531.0	Mm.440605	NM_181398	ENSMUSG00000058589	Anks1b	AIDA-1|AIDA-1b|C030032C09Rik|E530015N03Rik|EB-1|Gm10937|Gm1555	ankyrin repeat and sterile alpha motif domain containing 1B	protein-coding	-0.386388746427524	-0.498747881309834	-0.221291278397421	-0.503491510185131	-0.274892021625667	-0.186739528523859	-0.500847498229367	-0.503134166558326	0.481866515545314	0.84644710625036	1
Merged-chr4-63541245-4	chr4	63541159	63541359	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3506.0	NM_024173	66290.0	Mm.371615	NM_024173	ENSMUSG00000039105	Atp6v1g1	1810024D14Rik|AA960677|ATP6J|Atp6g1|VAG1|Vma10	ATPase, H+ transporting, lysosomal V1 subunit G1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-93123350-1	chr10	93123250	93123450	+	576.0	f0_c57.idr	Intergenic	PB1D10|SINE|Alu	-37526.0	NM_146239	237459.0	Mm.217404	NM_146239	ENSMUSG00000020015	Cdk17	6430598J10Rik|Pctk2	cyclin-dependent kinase 17	protein-coding	1.65469077899267	0.76130025384513	1.42408782391741	1.48833586088923	0.902539336520861	1.73156436131573	0.750079942610382	0.737527098743746	-0.968179504747114	0.508489295772385	0.943622639080647
Merged-chr6-28425296-2	chr6	28425196	28425396	+	585.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007480, intron 4 of 5)	intron (NM_007480, intron 4 of 5)	1692.0	NM_007480	11844.0	Mm.389075	NM_007480	ENSMUSG00000020440	Arf5	-	ADP-ribosylation factor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88380537-2	chr3	88380437	88380637	+	880.8333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1836.0	NM_001032298	12097.0	Mm.425160	NM_001032298	ENSMUSG00000074486	Bglap2	BGP2|Bglap1|Bgp|Og2|mOC-B	bone gamma-carboxyglutamate protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-136949740-4	chr5	136949606	136949806	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3569.0	NM_001163243	66437.0	Mm.25849	NM_025562	ENSMUSG00000019054	Fis1	2010003O14Rik|Ttc11	fission, mitochondrial 1	protein-coding	2.55858439565643	2.75530644300462	4.12703627665691	3.50558007336917	2.80273466406021	2.91698250570459	3.63121254182571	2.07686163288405	-0.684162809775239	0.33300191770611	0.833407803220256
Merged-chr10-117320761-4	chr10	117320694	117320894	+	971.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27926.0	NM_013590	17110.0	Mm.177539	NM_013590	ENSMUSG00000069515	Lyz1	Lyz|Lyzf3|Lzp-s	lysozyme 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-29008130-4	chr17	29008032	29008232	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134115)	promoter-TSS (NM_134115)	-137.0	NM_001357173	106504.0	Mm.439986	NM_134115	ENSMUSG00000024006	Stk38	5830476G13Rik|9530097A09Rik|AA617404|Ndr1	serine/threonine kinase 38	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-34506892-4	chr18	34506787	34506987	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146084)	promoter-TSS (NM_146084)	-64.0	NM_146084	225358.0	Mm.226899	NM_146084	ENSMUSG00000036501	Fam13b	2610024E20Rik|AW060714|AW546153	family with sequence similarity 13, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167931019-2	chr2	167930919	167931119	+	827.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1308.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-30781072-4	chr11	30780963	30781163	+	616.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134013, intron 1 of 46)	ID_B1|SINE|B4	9288.0	NM_134013	103554.0	Mm.240066	NM_134013	ENSMUSG00000040850	Psme4	AA409398|AU041366|TEMO|mKIAA0077	proteasome (prosome, macropain) activator subunit 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-3668905-4	chr2	3668797	3668997	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44561.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-114639514-4	chr9	114639418	114639618	+	977.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153585, intron 1 of 19)	intron (NM_153585, intron 1 of 19)	682.0	NM_153585	78893.0	Mm.283708	NM_153585	ENSMUSG00000056167	Cnot10	2600001P13Rik	CCR4-NOT transcription complex, subunit 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27562423-2	chr17	27562323	27562523	+	795.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166543, intron 4 of 4)	intron (NM_001166543, intron 4 of 4)	3304.0	NM_001002895	106672.0	Mm.61488	NM_001002895	ENSMUSG00000062753	AI413582	AI854251|Smim29	expressed sequence AI413582	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-87842685-4	chr10	87842588	87842788	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA5|LINE|L1	-15577.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-17836592-2	chr17	17836492	17836692	+	681.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162909, intron 3 of 8)	intron (NM_001162909, intron 3 of 8)	5617.0	NM_001162909	75202.0	Mm.227456	NM_029205	ENSMUSG00000080316	Spaca6	4930546H06Rik|9530079D04Rik|B230206P06Rik|Ncrna00085|SPACA6A|let-7e|mir-125a|mir-99b	sperm acrosome associated 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-155619980-3	chr2	155619863	155620063	+	918.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085378, intron 11 of 41)	intron (NM_001085378, intron 11 of 41)	-2917.0	NR_030757	735275.0		NR_030757	ENSMUSG00000076312	Mir499	Mirn499|mir-499|mmu-mir-499	microRNA 499	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-38643896-4	chr2	38643751	38643951	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011187)	promoter-TSS (NM_011187)	55.0	NM_011187	19177.0	Mm.389251	NM_011187	ENSMUSG00000026750	Psmb7	AU020723|MC14	proteasome (prosome, macropain) subunit, beta type 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-132575418-3	chr2	132575319	132575519	+	879.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355651, intron 1 of 19)	RSINE1|SINE|B4	2829.0	NM_001291050	74182.0	Mm.211211	NM_027096	ENSMUSG00000027346	Gpcpd1	2310004G06Rik|2310032D16Rik|AU015213|Gde5|Prei4|mKIAA1434	glycerophosphocholine phosphodiesterase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-83859914-4	chr7	83859838	83860038	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24403.0	NM_030705	80889.0	Mm.272998	NM_030705	ENSMUSG00000070462	Tlnrd1	AW061151|Mesdc1	talin rod domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-75735680-5	chr12	75735589	75735789	+	985.628601	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030750)	promoter-TSS (NM_030750)	40.0	NM_030750	81535.0	Mm.280199	NM_030750	ENSMUSG00000021054	Sgpp1	AI463453|SPP|SPP1|Spph1	sphingosine-1-phosphate phosphatase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-58660615-1	chr18	58660515	58660715	+	644.0	f1_balb.idr	intron (NM_025478, intron 1 of 4)	intron (NM_025478, intron 1 of 4)	1133.0	NM_025478	66307.0	Mm.182574	NM_025478	ENSMUSG00000024601	Isoc1	2610034N03Rik	isochorismatase domain containing 1	protein-coding	-1.01707008444741	-0.993492043802862	-1.00764648088546	-1.01185324898415	-1.01628940292637	-0.0453400029982381	-1.00444222658639	-1.01130848519189	3.32945445846488	0.287936268400993	1
Merged-chr14-73105577-4	chr14	73105467	73105667	+	842.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36943.0	NM_001170694	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-84647772-2	chr2	84647672	84647872	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007615, intron 1 of 19)	intron (NM_007615, intron 1 of 19)	1708.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88094836-2	chr3	88094736	88094936	+	675.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033484, intron 12 of 37)	intron (NM_001033484, intron 12 of 37)	12785.0	NM_001033484	404710.0	Mm.331133	NM_001033484	ENSMUSG00000028068	Iqgap3	AI593484|D030034H08	IQ motif containing GTPase activating protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-47799306-3	chr6	47799223	47799423	+	755.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009787, exon 8 of 10)	exon (NM_009787, exon 8 of 10)	4329.0	NR_030485	735289.0		NR_030485	ENSMUSG00000076060	Mir704	Mirn704|mir-704|mmu-mir-704	microRNA 704	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-139382544-4	chr4	139382456	139382656	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160319, intron 1 of 105)	intron (NM_001160319, intron 1 of 105)	1897.0	NM_001160319	69116.0	Mm.271956	NM_001160319	ENSMUSG00000066036	Ubr4	1810009A16Rik|A930005E13Rik|D930005K06Rik|Gm1032|Gm1666|N28143|RBAF600|Zubr1|mKIAA0462|p600	ubiquitin protein ligase E3 component n-recognin 4	protein-coding	-2.18292257394068	-2.15545247547656	-2.03304972317742	-2.17058342868585	-2.18099422382073	-2.1536522739386	-2.16187909550322	-2.16936197735154	-0.683654500252594	0.846597994014493	1
Merged-chr1-120170486-4	chr1	120170388	120170588	+	915.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001172074, intron 4 of 4)	intron (NM_001172074, intron 4 of 4)	49301.0	NM_001172074	73103.0	Mm.271602	NM_028439	ENSMUSG00000026388	3110009E18Rik	-	RIKEN cDNA 3110009E18 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-38239380-4	chr18	38239270	38239470	+	783.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027904, intron 1 of 1)	CpG	10828.0	NR_015475	73516.0	Mm.48776	NR_015475	ENSMUSG00000097080	1700086O06Rik	-	RIKEN cDNA 1700086O06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-6783174-4	chr17	6783101	6783301	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009510)	promoter-TSS (NM_009510)	-421.0	NM_009510	22350.0	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-21008908-4	chr17	21008801	21009001	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145483)	promoter-TSS (NM_145483)	-40.0	NM_145483	224585.0	Mm.296036	NM_145483	ENSMUSG00000067942	Zfp160	6720480D16Rik|F11|HKr18|HZF5|KR18|mKIAA1611|mszf47	zinc finger protein 160	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-54829750-1	chr13	54829650	54829850	+	611.0	f1_c57bl6.idr	Intergenic	Intergenic	40345.0	NM_028841	74257.0	Mm.32883	NM_028841	ENSMUSG00000025875	Tspan17	2210021G21Rik|AI047581|Fbxo23|Tm4sf17	tetraspanin 17	protein-coding	0.281260220807813	1.05464494622729	0.296847251602094	0.849937707485038	0.282715269578761	0.306069171759144	0.783693457415768	0.616294546557444	-0.902381993926306	0.634034572046993	1
Merged-chr4-148591402-4	chr4	148591236	148591436	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009272)	promoter-TSS (NM_009272)	-177.0	NM_009272	20810.0	Mm.10	NM_009272	ENSMUSG00000006442	Srm	AA407669|SpdST|SpdSy	spermidine synthase	protein-coding	5.54040884488407	3.77119436267391	4.99963278889265	5.18514148394811	5.0764096334101	5.89019397404982	5.92853559929715	5.29889045967771	0.652422388198525	0.077490616326501	0.423571895759786
Merged-chr1-91454675-2	chr1	91454575	91454775	+	855.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011066, intron 1 of 22)	intron (NM_011066, intron 1 of 22)	4653.0	NM_011066	18627.0	Mm.482463	NM_011066	ENSMUSG00000055866	Per2	mKIAA0347|mPer2	period circadian clock 2	protein-coding	1.27615158062943	0.708961873784464	0.887291147632665	1.25704803384453	0.971954790015628	1.36666955781302	0.700949718267349	1.26463896820377	0.199362009836729	0.890150634862513	0.998431161219273
Merged-chr6-72955049-4	chr6	72954943	72955143	+	938.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3189.0	NM_001039392	19240.0	Mm.3532	NM_025284	ENSMUSG00000079523	Tmsb10	Ptmb10|Tb10	thymosin, beta 10	protein-coding	2.28182826612827	2.10995146005472	2.27895160403601	2.21538391452613	2.58644867676911	1.59366780669389	1.55177215772541	1.85776075279195	-0.57926681192889	0.53771309548147	0.953963493057627
Merged-chr6-54946738-4	chr6	54946666	54946866	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001171007, intron 3 of 11)	ORR1G|LTR|ERVL-MaLR	24895.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-99172256-4	chr10	99172150	99172350	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153333, intron 11 of 12)	intron (NR_153333, intron 11 of 12)	64115.0	NM_015737	14426.0	Mm.314	NM_015737	ENSMUSG00000090035	Galnt4	AV011803	polypeptide N-acetylgalactosaminyltransferase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171271554-2	chr1	171271453	171271653	+	635.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_020579, intron 2 of 7)	intron (NM_020579, intron 2 of 7)	1225.0	NM_020579	57370.0	Mm.274011	NM_020579	ENSMUSG00000052423	B4galt3	9530061M23Rik|AA104562|AW125175|ESTM26|ESTM6|R74981	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 3	protein-coding	0.0125827307535384	0.0420895497425869	0.0326237253786143	1.23570299307389	0.0144802072426371	0.0441980284503786	0.0347275265115399	1.00898289153	-0.484188992759705	0.826629747515025	1
Merged-chr10-78316817-2	chr10	78316717	78316917	+	579.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_053014, intron 2 of 9)	intron (NM_053014, intron 2 of 9)	23390.0	NR_106119	102465765.0		NR_106119	ENSMUSG00000098885	Mir7659	Gm27433|mmu-mir-7659	microRNA 7659	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-20227814-1	chr12	20227714	20227914	+	607.0	f1_c57bl6.idr	Intergenic	MMERGLN-int|LTR|ERV1	587965.0	NR_015521	69513.0	Mm.273972	NR_015521	ENSMUSG00000099759	1700030C10Rik	-	RIKEN cDNA 1700030C10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-66113775-2	chr5	66113692	66113892	+	785.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001127382, intron 2 of 7)	B3|SINE|B2	-15613.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	2.40967718007149	2.22710707438065	2.87310843677476	2.0890274558225	2.66969624311884	2.8267992676452	1.35085678808671	1.56930730960043	-0.340111060341318	0.717345186644651	0.998431161219273
Merged-chr18-78137583-2	chr18	78137483	78137683	+	626.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001171011, intron 1 of 8)	intron (NM_001171011, intron 1 of 8)	4536.0	NM_001171011	108052.0	Mm.33832	NM_028122	ENSMUSG00000059336	Slc14a1	2610507K20Rik|3021401A05Rik|UT-B|Utb1	solute carrier family 14 (urea transporter), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-11133643-3	chr16	11133528	11133728	+	885.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029582, intron 1 of 11)	L2a|LINE|L2	904.0	NM_029582	106200.0	Mm.291015	NM_029582	ENSMUSG00000022498	Txndc11	2810408E11Rik|AI427833|EFP1|Txdc11	thioredoxin domain containing 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-74491330-4	chr11	74491232	74491432	+	975.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001015046, intron 2 of 24)	MIRb|SINE|MIR	98826.0	NM_001015046	380711.0	Mm.425690	NM_001015046	ENSMUSG00000038807	Rap1gap2	AU067654|Garnl4|Gm1561|mKIAA1039	RAP1 GTPase activating protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80644744-1	chr7	80644644	80644844	+	546.0	f1_balb.idr	TTS (NR_040343)	TTS (NR_040343)	8727.0	NR_040343	100504375.0	Mm.322881	NR_040343	ENSMUSG00000084821	Gm15880	-	predicted gene 15880	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171578010-1	chr1	171577910	171578110	+	542.0	f1_c57bl6.idr	intron (NM_018729, intron 5 of 8)	intron (NM_018729, intron 5 of 8)	18817.0	NM_018729	18106.0	Mm.2299	NM_018729	ENSMUSG00000004709	Cd244	2B4|C9.1|F730046O15Rik|Ly90|NAIL|NKR2B4|Nmrk|SLAMF4	CD244 natural killer cell receptor 2B4	protein-coding	0.332701500572105	1.15359354422087	0.192888310452951	0.364145315561822	0.337420804675673	0.585244397040812	0.194494284848342	0.367418054733412	-1.25108033169442	0.478490805216314	1
Merged-chr4-99716101-2	chr4	99716001	99716201	+	973.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081264, intron 1 of 14)	B1F2|SINE|Alu	471.0	NM_001081264	320438.0	Mm.32408	NM_001081264	ENSMUSG00000073792	Alg6	E230028F23Rik	asparagine-linked glycosylation 6 (alpha-1,3,-glucosyltransferase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-64128542-2	chr15	64128442	64128642	+	670.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 17 of 28)	intron (NM_001276461, intron 17 of 28)	-68094.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-148115624-4	chr4	148115452	148115652	+	639.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027426, intron 2 of 6)	intron (NM_027426, intron 2 of 6)	15146.0	NM_027426	70433.0	Mm.275288	NM_027426	ENSMUSG00000029005	Draxin	2610109H07Rik|neucrin	dorsal inhibitory axon guidance protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-9424079-1	chr13	9423979	9424179	+	649.0	f0_balb.idr	intron (NM_001081426, intron 1 of 36)	intron (NM_001081426, intron 1 of 36)	147554.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-65663909-4	chr17	65663802	65664002	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133685, intron 6 of 6)	intron (NM_133685, intron 6 of 6)	-21698.0	NM_001146002	213272.0	Mm.255732	NM_153519	ENSMUSG00000050612	Txndc2	AU021712|Sptrx-1|Sptrx1|Trx4	thioredoxin domain containing 2 (spermatozoa)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-30811098-4	chr10	30810999	30811199	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7773.0	NM_001358842	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64379987-2	chr5	64379887	64380087	+	781.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	87955.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-30974586-2	chr13	30974486	30974686	+	582.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025588)	promoter-TSS (NM_025588)	-539.0	NM_025588	66482.0	Mm.293510	NM_025588	ENSMUSG00000021357	Exoc2	2410030I24Rik|AI648199|Sec5|Sec5l1	exocyst complex component 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-41520988-4	chr13	41520895	41521095	+	884.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33635.0	NM_001111324	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-53403951-4	chr19	53403890	53404090	+	923.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-13356.0	NM_172429	76479.0	Mm.313687	NM_172429	ENSMUSG00000025024	Smndc1	-	survival motor neuron domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-103655828-4	chr2	103655710	103655910	+	957.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178890, intron 1 of 16)	intron (NM_178890, intron 1 of 16)	89500.0	NM_178890	99382.0	Mm.35850	NM_178890	ENSMUSG00000032724	Abtb2	AW539457|BPOZ-2	ankyrin repeat and BTB (POZ) domain containing 2	protein-coding	3.08225107479984	2.20076103811774	2.3166387258551	3.16846501791443	3.10759298463985	2.59231780493335	3.69365555583059	3.46770627388842	0.875570529534293	0.200572210508646	0.68430295213727
Merged-chr17-32947444-4	chr17	32947369	32947569	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_130882)	promoter-TSS (NM_130882)	-108.0	NM_130882	170716.0	Mm.254838	NM_130882	ENSMUSG00000024055	Cyp4f13	0610030I10Rik|Cypf13	cytochrome P450, family 4, subfamily f, polypeptide 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-84654294-4	chr3	84654205	84654405	+	806.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11887.0	NM_177260	320782.0	Mm.107370	NM_177260	ENSMUSG00000056498	Tmem154	9930117H01Rik	transmembrane protein 154	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-60844862-4	chr11	60844770	60844970	+	857.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001172112, intron 2 of 6)	intron (NM_001172112, intron 2 of 6)	14239.0	NM_145428	216820.0	Mm.21475	NM_145428	ENSMUSG00000042569	Dhrs7b	BC003479|C79874|C80074|PexRAP	dehydrogenase/reductase (SDR family) member 7B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-145863583-6	chr6	145863409	145863609	+	914.763916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_024469, exon 5 of 5)	exon (NM_024469, exon 5 of 5)	1911.0	NM_024469	79362.0	Mm.154529	NM_024469	ENSMUSG00000030256	Bhlhe41	6430520M22Rik|Bhlhb2l|Bhlhb3|DEC2|Sharp1	basic helix-loop-helix family, member e41	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-77837893-4	chr15	77837796	77837996	+	894.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022410, intron 1 of 40)	intron (NM_022410, intron 1 of 40)	4279.0	NM_022410	17886.0	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-32933509-2	chr19	32933393	32933593	+	551.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	175916.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	-1.8429182434137	-1.8129848525291	-1.82203695700074	-1.54461076807193	-1.84081697472045	-1.81102322372834	-1.81998775896484	-1.82814164409203	-1.43114970378833	0.684630132144154	1
Merged-chr18-88774303-3	chr18	88774195	88774395	+	880.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	119912.0	NM_018821	54607.0	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-41349003-4	chr4	41348923	41349123	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290454)	promoter-TSS (NM_001290454)	27.0	NM_023305	67123.0	Mm.289795	NM_023305	ENSMUSG00000028437	Ubap1	2700092A01Rik|NAG20|UBAP-1|Ubap	ubiquitin-associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-67246241-2	chr7	67246141	67246341	+	645.200012	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357324, intron 8 of 11)	B1_Mus2|SINE|Alu	23625.0	NM_001191051	75099.0	Mm.121691	NM_175215	ENSMUSG00000043831	Lysmd4	4930506D23Rik	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-97465308-2	chr9	97465206	97465406	+	904.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_022319, intron 10 of 17)	intron (NM_022319, intron 10 of 17)	-95348.0	NM_030219	78911.0	Mm.108347	NM_030219	ENSMUSG00000032451	Trim42	4930486B16Rik	tripartite motif-containing 42	protein-coding	2.12784986200535	1.7082095923197	2.55376088954706	1.2401457685207	1.52410859083839	1.05454001422445	2.16302711698677	1.00815292659828	-1.27528615629344	0.279882449423953	0.783093158405392
Merged-chr2-158144927-1	chr2	158144827	158145027	+	1000.0	f0_balb.idr	intron (NM_009373, intron 1 of 12)	intron (NM_009373, intron 1 of 12)	1465.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30435818-3	chr7	30435825	30436025	+	668.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007467, intron 14 of 16)	intron (NM_007467, intron 14 of 16)	9657.0	NM_007467	11803.0	Mm.2381	NM_007467	ENSMUSG00000006651	Aplp1	-	amyloid beta (A4) precursor-like protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-14329480-2	chr2	14329403	14329603	+	591.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_008625, intron 28 of 29)	intron (NM_008625, intron 28 of 29)	-58895.0	NM_001012305	277468.0	Mm.44662	NM_001012305	ENSMUSG00000036949	Slc39a12	AW046938|Gm731	solute carrier family 39 (zinc transporter), member 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70005713-2	chr11	70005613	70005813	+	750.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_007888, exon 5 of 15)	exon (NM_007888, exon 5 of 15)	5087.0	NM_007888	13543.0	Mm.5114	NM_007888	ENSMUSG00000020888	Dvl2	-	dishevelled segment polarity protein 2	protein-coding	0.108805934880253	0.834120642232828	-0.0326969929662327	-0.0374720347472841	0.113331327164364	0.505140899903947	-0.0313354871531122	-0.0366364377729478	-0.83307702875681	0.691438907427397	1
Merged-chr4-155892246-4	chr4	155892189	155892389	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033490)	promoter-TSS (NM_001033490)	414.0	NM_207223	140500.0	Mm.219591	NM_207223	ENSMUSG00000029033	Acap3	Centb5|Kiaa1716-hp|mKIAA1716	ArfGAP with coiled-coil, ankyrin repeat and PH domains 3	protein-coding	4.39155646393374	4.48099139553047	2.3240545627513	3.16015513098828	3.29754564889355	4.40856810245433	4.67559841894052	3.47545810704987	0.306824968569197	0.615669329382262	0.977352076822579
Merged-chr11-68904897-1	chr11	68904797	68904997	+	772.5	f1_c57bl6.idr	TTS (NR_003373)	TTS (NR_003373)	3308.0	NR_003373	100034726.0	Mm.3229	NR_003373	ENSMUSG00000062353	Gm15772	-	ribosomal protein L26 pseudogene	pseudo	2.55357202481534	3.43918177198632	1.77675391254829	3.42758601856285	2.19778708482892	3.30565795621385	1.79173012167264	3.44477349806081	-0.164605241843024	0.84069212613343	0.998431161219273
Merged-chr3-19188226-4	chr3	19188133	19188333	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356295)	promoter-TSS (NM_001356295)	-62.0	NM_001356295	67472.0	Mm.45125	NM_026182	ENSMUSG00000027601	Mtfr1	1300002C08Rik|1700080D04Rik|2810026O10Rik|4930579E05Rik|Chppr|Fam54a2	mitochondrial fission regulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91210698-2	chr2	91210598	91210798	+	697.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_028119)	TTS (NM_028119)	7786.0	NM_007387	11432.0	Mm.45570	NM_007387	ENSMUSG00000002103	Acp2	Acp-2|LAP	acid phosphatase 2, lysosomal	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-83639267-3	chr7	83639165	83639365	+	920.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023377, intron 5 of 5)	intron (NM_023377, intron 5 of 5)	7248.0	NM_023377	170460.0	Mm.357953	NM_023377	ENSMUSG00000046027	Stard5	2310058G22Rik|AI607880|D7Ertd152e	StAR-related lipid transfer (START) domain containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-180023026-2	chr2	180022926	180023126	+	579.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1961.0	NM_177727	241846.0	Mm.21577	NM_177727	ENSMUSG00000039108	Lsm14b	9430078B04|BC040823	LSM family member 14B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-108759920-4	chr8	108759836	108760036	+	917.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007496, intron 1 of 9)	intron (NM_007496, intron 1 of 9)	45292.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-102830393-2	chr2	102830293	102830493	+	691.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039151, intron 5 of 8)	intron (NM_001039151, intron 5 of 8)	71272.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-9404206-1	chr11	9404106	9404306	+	1000.0	f0_balb.idr	intron (NM_178259, intron 35 of 61)	intron (NM_178259, intron 35 of 61)	212264.0	NM_178259	268379.0	Mm.39270	NM_178259	ENSMUSG00000004668	Abca13	9830132L24|A930002G16Rik|AI956815	ATP-binding cassette, sub-family A (ABC1), member 13	protein-coding	0.794738225833958	1.73019271071677	1.11300907269124	1.73418069871689	1.85383791047855	0.879568230461386	0.854890147100169	2.72939967237506	1.16212570063839	0.381543733833402	0.872879327710422
Merged-chr13-81134573-4	chr13	81134467	81134667	+	758.645813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 87 of 89)	RMER10A|LTR|ERVL	170493.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-22564745-2	chr16	22564645	22564845	+	667.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346673, intron 15 of 23)	intron (NM_001346673, intron 15 of 23)	-32561.0	NR_106170	102465887.0		NR_106170	ENSMUSG00000099071	Mir8095	Gm27566|mmu-mir-8095	microRNA 8095	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-98820835-4	chr13	98820833	98821033	+	735.950012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5484.0	NM_172591	218503.0	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-170796650-1	chr1	170796550	170796750	+	781.0	f0_balb.idr	intron (NM_001081304, intron 10 of 15)	intron (NM_001081304, intron 10 of 15)	71121.0	NM_001081304	226641.0	Mm.377046	NM_001081304	ENSMUSG00000026663	Atf6	9130025P16Rik|9630036G24|AA789574|Atf6alpha|ESTM49	activating transcription factor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124849902-2	chr6	124849802	124850002	+	800.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013534, intron 9 of 14)	intron (NM_013534, intron 9 of 14)	7785.0	NM_013534	14789.0	Mm.35708	NM_013534	ENSMUSG00000023191	P3h3	BC016431|Grcb|Leprel2	prolyl 3-hydroxylase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-65931638-1	chr17	65931538	65931738	+	545.0	f1_c57bl6.idr	intron (NM_023053, intron 3 of 4)	intron (NM_023053, intron 3 of 4)	19549.0	NM_023053	65960.0	Mm.10153	NM_023053	ENSMUSG00000024098	Twsg1	1810013J15Rik|9030422N06Rik|AW552143|D17Ertd403e|Tsg|Twg	twisted gastrulation BMP signaling modulator 1	protein-coding	-0.762657070553555	-0.255604551687877	-0.297191510787805	-0.758477898218907	-0.762035828630521	-0.751948916039235	-0.755236199249042	-0.758037712449839	-3.16651170358236	0.276199141063791	1
Merged-chr7-88185356-3	chr7	88185282	88185482	+	701.022217	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-92703.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-71917871-1	chr15	71917771	71917971	+	702.0	f0_balb.idr	intron (NM_027174, intron 23 of 63)	intron (NM_027174, intron 23 of 63)	116356.0	NM_027174	69700.0	Mm.322500	NM_027174	ENSMUSG00000079022	Col22a1	2310067L16Rik|C80743	collagen, type XXII, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-77185185-3	chr11	77185081	77185281	+	967.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176965, intron 1 of 17)	intron (NM_176965, intron 1 of 17)	3787.0	NM_176965	319634.0	Mm.108786	NM_176965	ENSMUSG00000050944	Efcab5	4930563A03Rik	EF-hand calcium binding domain 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76309689-4	chr15	76309599	76309799	+	941.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2454.0	NM_153122	75475.0	Mm.322738	NM_153122	ENSMUSG00000022562	Oplah	1700010G02Rik	5-oxoprolinase (ATP-hydrolysing)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129310848-4	chr2	129310886	129311086	+	931.142822	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1014.0	NM_010554	16175.0	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	3.14669882764201	2.29800549208016	2.22165783867587	2.78109768388142	2.34339394403825	3.25098275871485	2.39910879595754	3.12684044645725	0.314151092855667	0.673775253089394	0.99440487726309
Merged-chr10-121396465-2	chr10	121396365	121396565	+	557.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_029364, exon 14 of 14)	3' UTR (NM_029364, exon 14 of 14)	31375.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80144022-4	chr7	80143933	80144133	+	830.354126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28683.0	NM_173011	269951.0	Mm.246432	NM_173011	ENSMUSG00000030541	Idh2	E430004F23|IDPm|Idh-2	isocitrate dehydrogenase 2 (NADP+), mitochondrial	protein-coding	1.57500791309867	1.78496825211579	0.983211301761597	1.99264565270361	1.89697786742969	1.00916431893105	0.987957346154349	2.32452822942431	0.185602214627196	0.885002644138275	0.998431161219273
Merged-chr3-108553385-2	chr3	108553285	108553485	+	558.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_028538)	TTS (NR_028538)	1017.0	NR_028538	100217438.0		NR_028538		Scarna2	MBII-382	small Cajal body-specific RNA 2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-101841954-2	chr5	101841854	101842054	+	683.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 66 of 66)	intron (NM_172882, intron 66 of 66)	76824.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-35757216-3	chr7	35757132	35757332	+	766.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2778.0	NM_178704	233115.0	Mm.257808	NM_178704	ENSMUSG00000043671	Dpy19l3	6030410G08|9330164H19Rik	dpy-19-like 3 (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71521830-4	chr8	71521733	71521933	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10064.0	NM_032398	84094.0	Mm.260768	NM_032398	ENSMUSG00000034845	Plvap	MECA32|Pv1	plasmalemma vesicle associated protein	protein-coding	4.64460884475139	5.52346604594334	2.65386355042607	4.15921167514854	4.14323298658318	4.72093169148138	4.24857098810156	4.66495388708164	-0.156631548765684	0.764767311586479	0.998431161219273
Merged-chr18-79294976-1	chr18	79294876	79295076	+	565.0	f0_balb.idr	Intergenic	Intergenic	-185585.0	NM_053099	240427.0	Mm.312871	NM_053099	ENSMUSG00000024548	Setbp1	C130092E12|Seb|mKIAA0437	SET binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-74367025-2	chr13	74366925	74367125	+	795.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-3025.0	NM_001033042	432779.0	Mm.324679	NM_001033042	ENSMUSG00000021579	Lrrc14b	AI595366	leucine rich repeat containing 14B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69618954-2	chr11	69618854	69619054	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-1049.0	NM_011367	20415.0	Mm.1431	NM_011367	ENSMUSG00000005202	Shbg	ABP	sex hormone binding globulin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-96379229-4	chr10	96379144	96379344	+	971.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	153037.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-36938735-4	chr15	36938645	36938845	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	68657.0	NM_026521	68036.0	Mm.371631	NM_026521	ENSMUSG00000062397	Zfp706	3110006P09Rik|AA793007|AW536850|C77232|Znf706	zinc finger protein 706	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-60803887-3	chr11	60803800	60804000	+	612.583313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009171, intron 3 of 11)	PB1|SINE|Alu	7365.0	NM_009171	20425.0	Mm.364956	NM_009171	ENSMUSG00000020534	Shmt1	AI324848|AI385541|C81125|Shmt|mshmt|mshmt1|mshmt2	serine hydroxymethyltransferase 1 (soluble)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-89021079-4	chr11	89020974	89021174	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009546)	TTS (NM_009546)	21671.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	5.64084944514261	5.23862021756999	5.78277191331184	5.46754391858841	6.46626340044302	6.10044211565439	6.55074362754336	6.38520594529906	0.922099292151299	9.43105569179116e-05	0.0029693192866138
Merged-chr13-107101770-4	chr13	107101671	107101871	+	970.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	79201.0	NR_015471	100040322.0	Mm.133867	NR_015471	ENSMUSG00000071181	3830408C21Rik	-	RIKEN cDNA 3830408C21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-34283958-2	chr10	34283856	34284056	+	712.166626	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009433, exon 1 of 1)	3' UTR (NM_009433, exon 1 of 1)	1766.0	NM_009433	22110.0	Mm.20445	NM_009433	ENSMUSG00000047514	Tspyl1	Tspyl	testis-specific protein, Y-encoded-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-87397326-4	chr17	87397231	87397431	+	972.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029298, intron 5 of 6)	intron (NM_029298, intron 5 of 6)	30410.0	NM_029298	75467.0	Mm.50108	NM_029298	ENSMUSG00000036557	Stpg4	1700011E24Rik|GSE	sperm tail PG rich repeat containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152795081-4	chr1	152795016	152795216	+	735.31665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5037.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-96566324-4	chr15	96566230	96566430	+	997.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	75632.0	NM_134086	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-4093008-4	chr10	4092901	4093101	+	930.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170785, intron 24 of 27)	intron (NM_001170785, intron 24 of 27)	119926.0	NM_172308	270685.0	Mm.184752	NM_172308	ENSMUSG00000040675	Mthfd1l	2410004L15Rik|AI647056|Fthfsdc1	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-8515671-4	chr4	8515559	8515759	+	990.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19985.0	NM_021518	59021.0	Mm.397471	NM_021518	ENSMUSG00000047187	Rab2a	9330148M11Rik|C80220|Rab2	RAB2A, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-181436499-3	chr2	181436389	181436589	+	808.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028125, intron 1 of 2)	intron (NM_028125, intron 1 of 2)	-12101.0	NM_027656	72147.0	Mm.486504	NM_027656	ENSMUSG00000027583	Zbtb46	2610019F01Rik|4933406L05Rik|BZEL|Btbd4	zinc finger and BTB domain containing 46	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-62185395-1	chr12	62185295	62185495	+	549.0	f1_balb.idr	Intergenic	Lx3B|LINE|L1	-502392.0	NR_131949	73309.0	Mm.276558	NR_131949		Spanxn4	1700047L15Rik	SPANX family, member N4	ncRNA	-0.365939583652835	-0.508439093087843	-0.512976951753268	-0.516491998140146	-0.361645097530511	-0.507418974254247	0.40384510838906	-0.515877040222227	2.80917066140665	0.263585866019238	1
Merged-chr19-3980535-4	chr19	3980457	3980657	+	950.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177438, intron 8 of 9)	intron (NM_001177438, intron 8 of 9)	-6013.0	NM_001302479	71670.0	Mm.29735	NM_027857	ENSMUSG00000024866	Acy3	0610006H10Rik|AA3|AAIII|AW107362|Acy-3|HCBP1	aspartoacylase (aminoacylase) 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-41554460-1	chr5	41554360	41554560	+	597.333313	f0_c57.idr	Intergenic	Lx7|LINE|L1	153231.0	NM_001310592	100972.0	Mm.41555	NM_027295	ENSMUSG00000029128	Rab28	2700023P08Rik|AW496496	RAB28, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122908605-2	chr8	122908505	122908705	+	622.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_037865, intron 4 of 13)	intron (NR_037865, intron 4 of 13)	60231.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-7850790-3	chr10	7850675	7850875	+	927.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172785, intron 2 of 5)	intron (NM_172785, intron 2 of 5)	14394.0	NR_039563	100628581.0		NR_039563	ENSMUSG00000093060	Mir5104	mir-5104|mmu-mir-5104|mu-mir-5104	microRNA 5104	ncRNA	1.6160840888313	0.880470704050621	0.864223362229123	1.37373858633543	2.00738684842101	1.12305130844918	1.09033189539381	1.81929989956431	1.21275482012614	0.358251293892059	0.85538301953918
Merged-chr8-26714910-2	chr8	26714810	26715010	+	707.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	109513.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-26994425-4	chr14	26994367	26994567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5895.0	NM_010420	15209.0	Mm.4802	NM_010420	ENSMUSG00000040726	Hesx1	HES-1|Rpx	homeobox gene expressed in ES cells	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-114933251-2	chr5	114933152	114933352	+	600.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359946, intron 3 of 4)	intron (NM_001359946, intron 3 of 4)	-8950.0	NM_028211	72357.0	Mm.292672	NM_028211	ENSMUSG00000029559	2210016L21Rik	-	RIKEN cDNA 2210016L21 gene	protein-coding	0.212585223322587	-0.0288262997070904	-0.208295629855509	-0.211195239151537	0.0304119493522556	-0.203657956308199	-0.207463833212378	0.181094281296025	0.0601674130287473	0.979005105922723	1
Merged-chr19-44332456-4	chr19	44332340	44332540	+	978.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183216)	promoter-TSS (NM_183216)	-886.0	NM_183216	329065.0	Mm.313583	NM_183216	ENSMUSG00000050195	Scd4	ACOD4	stearoyl-coenzyme A desaturase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-110910667-3	chr7	110910543	110910743	+	781.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194464, intron 10 of 20)	HAL1b|LINE|L1	5658.0	NR_045267	100504184.0	Mm.441327	NR_045267	ENSMUSG00000087160	Gm16336	-	predicted gene 16336	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28332019-2	chr17	28331919	28332119	+	876.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_011287)	TTS (NM_011287)	3454.0	NM_001357628	19896.0	Mm.336955	NM_011287	ENSMUSG00000037805	Rpl10a	CsA-19|Nedd6	ribosomal protein L10A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107726451-2	chr9	107726351	107726551	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-15976.0	NM_011349	20350.0	Mm.12903	NM_011349	ENSMUSG00000034684	Sema3f	Sema4|Semak	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69901684-4	chr11	69901595	69901795	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001316696)	promoter-TSS (NM_001316696)	-121.0	NM_001291118	216860.0	Mm.268347	NM_001013414	ENSMUSG00000047284	Neurl4	-	neuralized E3 ubiquitin protein ligase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141444665-4	chr4	141444554	141444754	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009541)	promoter-TSS (NM_009541)	-19.0	NM_009541	22642.0	Mm.389590	NM_009541	ENSMUSG00000006215	Zbtb17	AA589413|Lp-1|Miz1|Zfp100|mZ13	zinc finger and BTB domain containing 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84235743-4	chr8	84235641	84235841	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172503, intron 1 of 13)	intron (NM_172503, intron 1 of 13)	1301.0	NM_172503	212168.0	Mm.117094	NM_172503	ENSMUSG00000035671	Zswim4	D330002I24|E130119J17Rik	zinc finger SWIM-type containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46395471-4	chr8	46395309	46395509	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11B|LTR|ERVK	-75628.0	NM_007981	14081.0	Mm.210323	NM_007981	ENSMUSG00000018796	Acsl1	Acas|Acas1|Acs|FACS|Facl2|LACS 1|LACS1	acyl-CoA synthetase long-chain family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-135297859-2	chr6	135297759	135297959	+	720.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12525.0	NM_029595	76400.0	Mm.293018	NM_029595	ENSMUSG00000047104	Pbp2	1700023A18Rik|AI326308|Pebp-2|Pebp2	phosphatidylethanolamine binding protein 2	protein-coding	0.70683264769228	0.451036003909815	1.03468197991685	0.993012546438864	0.581919750013637	0.452891696326031	0.444601365976391	1.19207928604439	-0.519857516081506	0.759032293756758	1
Merged-chr8-33599568-4	chr8	33599446	33599646	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017374)	promoter-TSS (NM_017374)	-75.0	NM_017374	19053.0	Mm.29301	NM_017374	ENSMUSG00000009630	Ppp2cb	AI115466|D8Ertd766e|PP2Ac	protein phosphatase 2 (formerly 2A), catalytic subunit, beta isoform	protein-coding	4.06553153045336	4.62948555487732	4.48733391162203	4.11205638740678	4.40669402928697	4.83875371784876	3.92892979863227	2.55225908163717	-0.236035725175739	0.644657577363827	0.983701068654072
Merged-chr3-97932925-1	chr3	97932825	97933025	+	558.0	f0_balb.idr	intron (NM_001033779, intron 1 of 1)	intron (NM_001033779, intron 1 of 1)	2752.0	NM_001033779	433632.0	Mm.212421	NM_001033779		Gm5544	EG433632	predicted gene 5544	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-87571814-4	chr17	87571702	87571902	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64177.0	NM_008532	17075.0	Mm.4259	NM_008532	ENSMUSG00000045394	Epcam	CD326|EGP|EGP-2|Egp314|Ep-CAM|EpCAM1|GA733-2|Ly74|TROP1|Tacsd1|Tacstd1|gp40	epithelial cell adhesion molecule	protein-coding	-0.746621392297173	-0.691998643274541	-0.868933229295606	-0.870709317471405	-0.743197202213652	-0.687980024568361	-0.705906818019729	-0.870400011935444	0.69398008663317	0.78714797355659	1
Merged-chr5-145139259-2	chr5	145139159	145139359	+	654.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033313, intron 1 of 5)	intron (NM_001033313, intron 1 of 5)	830.0	NM_001033313	231887.0	Mm.188851	NM_001033313	ENSMUSG00000029623	Pdap1	HASPP28|PAP|PAP1	PDGFA associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-31106722-4	chr3	31106621	31106821	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039090, intron 2 of 6)	intron (NM_001039090, intron 2 of 6)	11663.0	NM_001271772	20482.0	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-104724548-1	chr9	104724448	104724648	+	743.0	f0_balb.idr	intron (NM_028719, intron 2 of 15)	ORR1E|LTR|ERVL-MaLR	155065.0	NM_028719	74020.0	Mm.326240	NM_028719	ENSMUSG00000032564	Cpne4	3632411M23Rik|4933406O10Rik	copine IV	protein-coding	1.31807929959153	2.70864700347047	0.787512674888129	0.767464176118975	1.99032777902942	1.70112612715477	1.06674087395574	0.771020560240611	-0.577362636264152	0.671774699421745	0.994295938730731
Merged-chr12-72761781-4	chr12	72761670	72761870	+	985.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008910, intron 1 of 5)	CpG	559.0	NM_008910	19042.0	Mm.261045	NM_008910	ENSMUSG00000021096	Ppm1a	2310003C21Rik|2900017D14Rik|AI427932|AU017636|MMPa-2|MPPa-1	protein phosphatase 1A, magnesium dependent, alpha isoform	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-53375852-2	chr11	53375752	53375952	+	725.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_033565, intron 4 of 20)	intron (NM_033565, intron 4 of 20)	25085.0	NM_033565	93736.0	Mm.395281	NM_033565	ENSMUSG00000049470	Aff4	AF5Q31|Alf4|Laf4l|MCEF	AF4/FMR2 family, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133203607-4	chr4	133203509	133203709	+	739.145813	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7954.0	NR_105984	102466215.0		NR_105984	ENSMUSG00000099202	Mir7017	Gm27945|mmu-mir-7017	microRNA 7017	ncRNA	2.40687070385398	2.36673548913559	2.70268383077789	1.33197499158012	2.23515342481539	1.67469718751129	2.42496037850451	2.86904717356128	0.171141760832759	0.854158594781952	0.998431161219273
Merged-chr10-51571415-4	chr10	51571324	51571524	+	994.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR26_Mus|LTR|ERVK	19036.0	NM_029894	77296.0	Mm.30588	NM_029894	ENSMUSG00000019909	Fam162b	9430073N08Rik	family with sequence similarity 162, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-87503067-4	chr6	87502942	87503142	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037727, intron 1 of 10)	intron (NM_001037727, intron 1 of 10)	-6715.0	NM_175476	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-60744744-3	chr10	60744649	60744849	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023596, intron 2 of 5)	intron (NM_023596, intron 2 of 5)	8033.0	NM_023596	71279.0	Mm.284462	NM_023596	ENSMUSG00000020100	Slc29a3	4933435C21Rik|AW987637|Ent3	solute carrier family 29 (nucleoside transporters), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-93913799-3	chr2	93913712	93913912	+	670.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43288.0	NM_001145034	620695.0	Mm.482106	NM_001145034	ENSMUSG00000087006	Gm13889	Ag2	predicted gene 13889	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-119185851-2	chr13	119185751	119185951	+	841.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	223160.0	NM_008710	18115.0	Mm.132584	NM_008710	ENSMUSG00000116207	Nnt	4930423F13Rik|AI323702|BB168308	nicotinamide nucleotide transhydrogenase	protein-coding	1.62825271514038	2.75601628609809	2.89739499964917	1.88815088300532	2.07306593320967	2.68174928986512	2.1168146957525	1.26463224837828	-0.615878378422996	0.522580291152925	0.947836760490745
Merged-chr2-32574346-2	chr2	32574246	32574446	+	555.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_010073)	TTS (NM_010073)	-1372.0	NM_198191	227733.0	Mm.78923	NM_198191	ENSMUSG00000046854	Pip5kl1	BC028795	phosphatidylinositol-4-phosphate 5-kinase-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-185224069-2	chr1	185223969	185224169	+	641.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163754, intron 2 of 34)	MER44B|DNA|TcMar-Tigger	-18857.0	NR_034044	100217449.0	Mm.429560	NR_034044	ENSMUSG00000077571	Snora36b	MBI-87	small nucleolar RNA, H/ACA box 36B	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-138258998-4	chr5	138258923	138259123	+	646.700012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_153161)	TTS (NM_153161)	3541.0	NM_001081108	66096.0	Mm.206901	NM_001081108	ENSMUSG00000050552	Lamtor4	0910001L09Rik|AV006840	late endosomal/lysosomal adaptor, MAPK and MTOR activator 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-114780348-7	chr9	114780049	114780249	+	980.785706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252479, intron 1 of 3)	intron (NM_001252479, intron 1 of 3)	1844.0	NM_133978	102545.0	Mm.35600	NM_133978	ENSMUSG00000032436	Cmtm7	AI481279|Cklfsf7|LNV	CKLF-like MARVEL transmembrane domain containing 7	protein-coding	1.84527627102384	4.04141044063383	2.9383297025861	1.4456429603632	3.06814764076836	3.66993811779885	2.72509827399336	2.96720324758828	0.284356030877991	0.732305905846931	0.998431161219273
Merged-chr4-135240503-4	chr4	135240396	135240596	+	983.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013885, intron 1 of 5)	intron (NM_013885, intron 1 of 5)	32264.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-55749971-4	chr17	55749864	55750064	+	997.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_139138)	promoter-TSS (NM_139138)	-20.0	NM_139138	52614.0	Mm.210497	NM_139138	ENSMUSG00000032915	Adgre4	D17Ertd479e|Egf-tm7|Emr4|Fire|Gpr127	adhesion G protein-coupled receptor E4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-15948474-3	chr16	15948411	15948611	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355731, intron 9 of 18)	intron (NM_001355731, intron 9 of 18)	61225.0	NM_007679	12609.0	Mm.347407	NM_007679	ENSMUSG00000071637	Cebpd	c/EBPdelta	CCAAT/enhancer binding protein (C/EBP), delta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27676464-3	chr2	27676392	27676592	+	883.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011305)	promoter-TSS (NM_011305)	-709.0	NM_011305	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65772362-4	chr9	65772275	65772475	+	901.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172536, intron 2 of 9)	intron (NM_172536, intron 2 of 9)	55189.0	NM_172536	214812.0	Mm.139231	NM_172536	ENSMUSG00000040524	Zfp609	9830165N24|BC016271|Znf609|mKIAA0295	zinc finger protein 609	protein-coding	-0.662826441749988	-1.00555184936033	-1.01675512286785	-1.01992432642343	-0.654846858003193	-1.00312405325568	-1.01421894731451	-1.01959449741028	0.0418081237259606	0.989738874530268	1
Merged-chr16-49755353-4	chr16	49755232	49755432	+	799.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028680, intron 6 of 10)	URR1A|DNA|hAT-Charlie	56038.0	NM_028680	73916.0	Mm.241276	NM_028680	ENSMUSG00000032965	Ift57	4833420A15Rik|Esrrbl1|Hippi|MHS4R2	intraflagellar transport 57	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-110993270-4	chr11	110993176	110993376	+	930.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252207, intron 2 of 2)	intron (NM_001252207, intron 2 of 2)	-4211.0	NM_001252209	16517.0	Mm.30176	NM_010604	ENSMUSG00000051497	Kcnj16	6430410F18Rik|AI132396|Kir5.1	potassium inwardly-rectifying channel, subfamily J, member 16	protein-coding	3.0399271059338	4.476650406671	2.82837850662827	3.94054529952904	3.24585185315704	3.64532417880006	3.11732878605282	4.11455864152821	-0.215301665945261	0.716955595205952	0.998431161219273
Merged-chr1-36445345-4	chr1	36445230	36445430	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310517)	promoter-TSS (NM_001310517)	-59.0	NM_001310517	214895.0	Mm.287854	NM_001013374	ENSMUSG00000001143	Lman2l	A630028F14Rik|VIP36-like|VIPL	lectin, mannose-binding 2-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-47878033-1	chr6	47877933	47878133	+	1000.0	f0_balb.idr	intron (NM_146175, intron 1 of 7)	CpG	478.0	NM_146175	101095.0	Mm.440186	NM_146175	ENSMUSG00000025821	Zfp282	AI449432|C81429|E430019K09Rik|HUB1	zinc finger protein 282	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124828377-2	chr6	124828277	124828477	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013700, intron 1 of 19)	intron (NM_013700, intron 1 of 19)	1107.0	NM_001326594	22225.0	Mm.3571	NM_013700	ENSMUSG00000038429	Usp5	AA407472|ISOT|ISOT-1|Ucht	ubiquitin specific peptidase 5 (isopeptidase T)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-84058726-2	chr17	84058626	84058826	+	729.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19934.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-10383621-4	chr17	10383525	10383725	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	59023.0	NR_045461	76634.0	Mm.491052	NR_045461	ENSMUSG00000099384	1700110C19Rik	-	RIKEN cDNA 1700110C19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-50910640-3	chr10	50910518	50910718	+	923.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011376, exon 8 of 11)	exon (NM_011376, exon 8 of 11)	14967.0	NM_011376	20464.0	Mm.4774	NM_011376	ENSMUSG00000019913	Sim1	bHLHe14|mSIM1	single-minded family bHLH transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-39927748-2	chr5	39927632	39927832	+	678.0	f0_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-283101.0	NM_010474	15476.0	Mm.12559	NM_010474	ENSMUSG00000051022	Hs3st1	3-Ost|D5Wsu110e|Hsg3ost	heparan sulfate (glucosamine) 3-O-sulfotransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-8833333-2	chr4	8833233	8833433	+	691.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355382, intron 13 of 36)	intron (NM_001355382, intron 13 of 36)	82009.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-10974602-2	chr16	10974502	10974702	+	737.700012	f1_balb.idr|f1_c57bl6.idr	intron (NM_019980, intron 1 of 3)	B4A|SINE|B4	18519.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-132008753-2	chr1	132008653	132008853	+	796.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_007923, intron 1 of 4)	intron (NM_007923, intron 1 of 4)	1148.0	NM_007923	13714.0	Mm.254233	NM_007923	ENSMUSG00000026436	Elk4	2310011G17Rik|A130026I01Rik|BB162516|SAP-1|Sap1	ELK4, member of ETS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-182905931-3	chr1	182905849	182906049	+	872.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48839.0	NM_016928	53791.0	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-73686020-2	chr12	73685920	73686120	+	942.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008856, intron 2 of 13)	intron (NM_008856, intron 2 of 13)	101224.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118148112-4	chr11	118148016	118148216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER4B|LTR|ERVK	-18897.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-94106080-3	chr13	94105977	94106177	+	893.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172589, intron 1 of 3)	intron (NM_172589, intron 1 of 3)	48281.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105331766-3	chr8	105331671	105331871	+	869.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177699, exon 15 of 22)	exon (NM_177699, exon 15 of 22)	5407.0	NM_025486	66320.0	Mm.29990	NM_025486	ENSMUSG00000014856	Tmem208	1700006C06Rik|2610030K20Rik|Hspc171	transmembrane protein 208	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-66180498-3	chr2	66180384	66180584	+	727.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55691.0	NM_015736	14425.0	Mm.439760	NM_015736	ENSMUSG00000026994	Galnt3	-	polypeptide N-acetylgalactosaminyltransferase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-113070330-2	chr12	113070230	113070430	+	878.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081170, intron 22 of 23)	intron (NM_001081170, intron 22 of 23)	-4172.0	NM_001361919	75671.0	Mm.23377	NM_029381	ENSMUSG00000012211	Tex22	1700028O09Rik|AV210422|Tep22	testis expressed gene 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-10344588-1	chr13	10344488	10344688	+	549.0	f0_balb.idr	intron (NM_033269, intron 1 of 4)	intron (NM_033269, intron 1 of 4)	16215.0	NM_033269	12671.0	Mm.342315	NM_033269	ENSMUSG00000046159	Chrm3	Chrm-3|M3|M3R	cholinergic receptor, muscarinic 3, cardiac	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-60180430-4	chr1	60180322	60180522	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173444)	promoter-TSS (NM_173444)	-177.0	NM_173444	269198.0	Mm.205224	NM_173444	ENSMUSG00000073664	Nbeal1	2310076G13Rik|A530050O19Rik|A530083I02Rik|AI662228|ALS2CR17	neurobeachin like 1	protein-coding	7.61041287097057	7.69124039759396	7.82951597487708	7.67812366437662	7.8179640333654	7.58408334437936	7.94131262389211	7.02068121881347	-0.0738203771271513	0.675880867354336	0.99440487726309
Merged-chr13-52610670-4	chr13	52610571	52610771	+	876.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011518, intron 1 of 13)	intron (NM_011518, intron 1 of 13)	13789.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-34800048-3	chr19	34799948	34800148	+	956.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	20725.0	NR_029783	723826.0		NR_029783	ENSMUSG00000065594	Mir107	Mirn107|mir-107|mmu-mir-107	microRNA 107	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89321408-2	chr3	89321308	89321508	+	960.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010108, intron 1 of 4)	CpG	1471.0	NM_010108	13638.0	Mm.331159	NM_010108	ENSMUSG00000028039	Efna3	AW494418|EFL-2|Ehk1-L|Epl3|LERK-3	ephrin A3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-83954409-2	chr17	83954309	83954509	+	874.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44143.0	NR_130994	78148.0	Mm.243918	NR_130994		8430430B14Rik	-	RIKEN cDNA 8430430B14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-41135951-4	chr4	41135869	41136069	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026275)	promoter-TSS (NM_026275)	-52.0	NM_026275	67615.0	Mm.389540	NM_026275	ENSMUSG00000036241	Ube2r2	1200003M11Rik|Cdc34b|Ubc3b	ubiquitin-conjugating enzyme E2R 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-91136697-1	chr8	91136597	91136797	+	799.0	f1_c57bl6.idr	Intergenic	Intergenic	-1203.0	NM_010241	14339.0	Mm.324588	NM_010241	ENSMUSG00000031667	Aktip	AL023020|Fif|Ft|Ft1|Fts	thymoma viral proto-oncogene 1 interacting protein	protein-coding	1.06064596095508	0.174483567839148	0.165404005487798	0.158303703101602	0.14812009633939	0.41008976958111	0.167418298181235	1.25326089899014	0.617577788468127	0.762275490254172	1
Merged-chr3-69004944-4	chr3	69004834	69005034	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026641)	promoter-TSS (NM_026641)	196.0	NM_133786	70099.0	Mm.206841	NM_133786	ENSMUSG00000034349	Smc4	2500002A22Rik|C79747|SMC-4|Smc4l1	structural maintenance of chromosomes 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-20681285-4	chr5	20681162	20681362	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170746, intron 22 of 22)	intron (NM_001170746, intron 22 of 22)	200862.0	NM_172992	68770.0	Mm.86410	NM_172992	ENSMUSG00000039987	Phtf2	1110054G21Rik|9530062N20Rik|AI447096|C77923	putative homeodomain transcription factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-107548503-2	chr11	107548403	107548603	+	960.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198298, intron 1 of 31)	intron (NM_198298, intron 1 of 31)	543.0	NM_198298	78455.0	Mm.272047	NM_198298	ENSMUSG00000020721	Helz	3110078M01Rik|9430093I07Rik|9630002H22Rik|AI851979|DRHC	helicase with zinc finger domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-99560898-1	chr10	99560798	99560998	+	547.0	f1_c57bl6.idr	Intergenic	Intergenic	-48273.0	NR_038019	100504202.0	Mm.403801	NR_038019	ENSMUSG00000111962	Gm20110	-	predicted gene, 20110	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117524720-2	chr8	117524620	117524820	+	596.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_172285, intron 2 of 32)	intron (NM_172285, intron 2 of 32)	26445.0	NM_172285	234779.0	Mm.192699	NM_172285	ENSMUSG00000034330	Plcg2	PLC-gamma-2|PLCgamma2|Plcg-2	phospholipase C, gamma 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-36203220-3	chr13	36203117	36203317	+	648.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039189, intron 1 of 5)	B4A|SINE|B4	85574.0	NM_001039189	69955.0	Mm.70690	NM_024274	ENSMUSG00000021420	Fars2	Fars1|pheRS	phenylalanine-tRNA synthetase 2 (mitochondrial)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-73372172-3	chr2	73372067	73372267	+	894.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276444, intron 4 of 15)	intron (NM_001276444, intron 4 of 15)	14313.0	NM_001276443	68526.0	Mm.451014	NM_001080707	ENSMUSG00000041762	Gpr155	1110017O10Rik|DEPDC3|F730029F15Rik|PGR22	G protein-coupled receptor 155	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-160276157-4	chr2	160276071	160276271	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51323.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80402372-2	chr10	80402272	80402472	+	592.166626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_025650)	TTS (NM_025650)	-2841.0	NM_001306143	17192.0	Mm.7142	NM_013595	ENSMUSG00000035478	Mbd3	AI181826|AU019209	methyl-CpG binding domain protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-44980110-4	chr14	44980020	44980220	+	901.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7991.0	NM_008964	19217.0	Mm.4630	NM_008964	ENSMUSG00000037759	Ptger2	EP2|Ptgerep2	prostaglandin E receptor 2 (subtype EP2)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-111896475-4	chr13	111896380	111896580	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28544.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-29807572-4	chr11	29807471	29807671	+	872.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146016, intron 17 of 41)	intron (NM_146016, intron 17 of 41)	18097.0	NM_176829	216622.0	Mm.443260	NM_176829	ENSMUSG00000078157	4931440F15Rik	Fem1ab	RIKEN cDNA 4931440F15 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-46557521-2	chr17	46557421	46557621	+	805.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-1359.0	NM_020493	20807.0	Mm.45044	NM_020493	ENSMUSG00000015605	Srf	AW049942|AW240594	serum response factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-10983856-4	chr4	10983762	10983962	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23757.0	NM_175175	71801.0	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	4.90181736038723	4.87091908065084	4.84694558761998	5.20975641119761	4.3737885284416	4.37072342501695	3.34688566533053	4.48714342122675	-0.93469921303246	0.0149659533303666	0.145041605862471
Merged-chr18-75047426-1	chr18	75047326	75047526	+	653.0	f0_balb.idr	intron (NM_027727, intron 2 of 16)	intron (NM_027727, intron 2 of 16)	28654.0	NM_027727	69190.0	Mm.173826	NM_027727	ENSMUSG00000035765	Dym	1810041M12Rik|4933427L07Rik|C030019K18Rik	dymeclin	protein-coding	1.06625641193235	2.05607112372386	1.14191369050984	1.11452194873211	2.35776270016155	2.57205824406731	2.57333943500112	2.7928702564842	3.21474841145691	0.00351695145616981	0.0508390163507534
Merged-chr12-78864405-3	chr12	78864329	78864529	+	721.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026114, intron 1 of 7)	intron (NM_026114, intron 1 of 7)	2357.0	NM_026114	13665.0	Mm.196220	NM_026114	ENSMUSG00000021116	Eif2s1	0910001O23Rik|2410026C18Rik|35kDa|Eif2a|eIF2alpha	eukaryotic translation initiation factor 2, subunit 1 alpha	protein-coding	2.14198180225627	1.90637447791404	2.46281331578164	1.56950245784789	2.57438397482149	1.92092731724059	3.61972207422624	2.51470875700426	1.56872790245498	0.0697470738299395	0.396850486157895
Merged-chr17-28329832-2	chr17	28329732	28329932	+	758.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357628, intron 4 of 5)	intron (NM_001357628, intron 4 of 5)	1267.0	NM_001357628	19896.0	Mm.336955	NM_011287	ENSMUSG00000037805	Rpl10a	CsA-19|Nedd6	ribosomal protein L10A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-75679494-1	chr10	75679394	75679594	+	540.0	f1_balb.idr	intron (NM_172549, intron 29 of 36)	intron (NM_172549, intron 29 of 36)	-35486.0	NM_027890	71733.0	Mm.247956	NM_027890	ENSMUSG00000006342	Susd2	1200011D11Rik	sushi domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117920528-2	chr10	117920428	117920628	+	846.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger5b|DNA|TcMar-Tigger	-4931.0	NR_045342	71067.0	Mm.410793	NR_045342	ENSMUSG00000112500	4933411E08Rik	-	RIKEN cDNA 4933411E08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-64688981-2	chr14	64688881	64689081	+	603.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081177, intron 2 of 39)	intron (NM_001081177, intron 2 of 39)	36450.0	NM_001081177	16554.0	Mm.23611	NM_001081177	ENSMUSG00000060012	Kif13b	5330429L19Rik|6030414C01|AI429803|C130021D12Rik|GAKIN	kinesin family member 13B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-35490754-4	chr16	35490615	35490815	+	900.03125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028295, intron 1 of 16)	CpG	158.0	NM_028295	72599.0	Mm.71015	NM_028295	ENSMUSG00000022844	Pdia5	2700053F16Rik|AU015525|Pdir	protein disulfide isomerase associated 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-77547259-2	chr10	77547159	77547359	+	962.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008404, exon 5 of 16)	exon (NM_008404, exon 5 of 16)	16911.0	NM_008404	16414.0	Mm.1137	NM_008404	ENSMUSG00000000290	Itgb2	2E6|AI528527|Cd18|LAD|LCAMB|Lfa1|MF17	integrin beta 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-106936927-4	chr13	106936827	106937027	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029665)	promoter-TSS (NM_029665)	31.0	NM_001360897	76582.0	Mm.132208	NM_029665	ENSMUSG00000042590	Ipo11	1700081H05Rik|2510001A17Rik|AI314624|AW555235|E330021B14Rik|Ranbp11	importin 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-59865241-4	chr10	59865170	59865370	+	998.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14321.0	NM_019965	56709.0	Mm.103610	NM_019965	ENSMUSG00000020109	Dnajb12	Dj10|mDj10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-115821863-2	chr3	115821763	115821963	+	742.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	66196.0	NR_027894	68161.0	Mm.392043	NR_015487	ENSMUSG00000054426	A930005H10Rik	-	RIKEN cDNA A930005H10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-57113112-4	chr17	57113014	57113214	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7172.0	NR_033508	100169874.0	Mm.76700	NR_033508	ENSMUSG00000079414	Gm11110	-	predicted gene 11110	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-72946541-4	chr11	72946459	72946659	+	756.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14610.0	NM_016745	53313.0	Mm.6306	NM_016745	ENSMUSG00000020788	Atp2a3	SERCA3b|Serca3	ATPase, Ca++ transporting, ubiquitous	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-24422846-2	chr5	24422746	24422946	+	767.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_007668, exon 2 of 12)	exon (NM_007668, exon 2 of 12)	684.0	NM_007668	12568.0	Mm.298798	NM_007668	ENSMUSG00000028969	Cdk5	AW048668|Crk6	cyclin-dependent kinase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85384661-2	chr12	85384561	85384761	+	824.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-9944.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-73731910-2	chr15	73731810	73732010	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166388, intron 1 of 5)	intron (NM_001166388, intron 1 of 5)	6980.0	NM_001166388	19245.0	Mm.390807	NM_008975	ENSMUSG00000059895	Ptp4a3	AV088979|Prl-3|pPtp4a3	protein tyrosine phosphatase 4a3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-142919426-4	chr7	142919334	142919534	+	949.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19468.0	NM_009377	21823.0	Mm.1292	NM_009377	ENSMUSG00000000214	Th	-	tyrosine hydroxylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-53537644-2	chr11	53537544	53537744	+	578.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252333, intron 8 of 9)	intron (NM_001252333, intron 8 of 9)	17456.0	NM_001361969	20362.0	Mm.274399	NM_033144	ENSMUSG00000018398	Sept8	AW046166|Sepl	septin 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-90868322-3	chr16	90868236	90868436	+	730.266663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199210, intron 2 of 7)	intron (NM_001199210, intron 2 of 7)	37477.0	NM_001316761	70967.0	Mm.253077	NM_027627	ENSMUSG00000039903	Eva1c	1700092M14Rik|4931408A02Rik|Fam176c	eva-1 homolog C (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-88973937-4	chr11	88973830	88974030	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016706)	promoter-TSS (NM_016706)	-5.0	NM_016706	12812.0	Mm.268004	NM_016706	ENSMUSG00000033983	Coil	C79982|Cln80|p80|p80-coilin	coilin	protein-coding	5.53481118904029	5.13281306678747	4.97612555648147	5.57779050700159	5.86141727970615	4.79296228417408	5.23577595846647	5.50392498866952	0.0917747707150771	0.771792116685805	0.998431161219273
Merged-chr6-97484791-4	chr6	97484721	97484921	+	770.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	2999.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6679903-4	chr19	6679816	6680016	+	927.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	-136846.0	NM_009203	20521.0	Mm.391146	NM_009203	ENSMUSG00000061742	Slc22a12	AI987855|OAT4L|Rst|Slc22al2|URAT1	solute carrier family 22 (organic anion/cation transporter), member 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-57436664-3	chr19	57436574	57436774	+	772.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16232.0	NM_029839	72133.0	Mm.258404	NM_028115	ENSMUSG00000025086	Trub1	2610009I02Rik|9030425C13Rik|AI448235|BB118943|C76870	TruB pseudouridine (psi) synthase family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-103309492-2	chr15	103309392	103309592	+	779.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_030720, exon 2 of 2)	exon (NM_030720, exon 2 of 2)	946.0	NM_030720	80910.0	Mm.160369	NM_030720	ENSMUSG00000063234	Gpr84	EX33	G protein-coupled receptor 84	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-76624223-2	chr11	76624123	76624323	+	650.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46484.0	NM_198894	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171826286-7	chr1	171826179	171826379	+	859.4523929999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MEg2|LINE|L1	-13418.0	NM_001252472	12523.0	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	3.2923172863745	2.21022124043799	3.49254342178939	2.56268224864995	3.1891710374674	2.22703276855907	3.37462664977644	3.47974931218512	0.264523142570942	0.705134571908408	0.998431161219273
Merged-chr1-75136444-2	chr1	75136362	75136562	+	621.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001356264, exon 8 of 8)	exon (NM_001356264, exon 8 of 8)	-2572.0	NM_194333	22626.0	Mm.68157	NM_194333	ENSMUSG00000026205	Slc23a3	SVCT3|Yspl1	solute carrier family 23 (nucleobase transporters), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-91033433-2	chr1	91033333	91033533	+	894.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111312, intron 1 of 12)	intron (NM_001111312, intron 1 of 12)	-20011.0	NM_001111311	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-170950817-4	chr1	170950727	170950927	+	926.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-23244.0	NM_001160215	98752.0	Mm.1850	NM_145141	ENSMUSG00000038421	Fcrla	BB219290|FCRL|FCRL1|FREB|Fcrlm1|Fcrx|Freb1|mFREB|mFcrX	Fc receptor-like A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81435126-2	chr10	81435026	81435226	+	970.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7953.0	NM_026756	18029.0	Mm.426936	NM_008688	ENSMUSG00000055053	Nfic	1110019L22Rik|1500041O16Rik|AA589446|AI746521|NF1-C	nuclear factor I/C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-120201526-4	chr10	120201440	120201640	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028679)	promoter-TSS (NM_028679)	57.0	NM_028679	73914.0	Mm.146194	NM_028679	ENSMUSG00000020227	Irak3	4833428C18Rik|AI563835|IRAK-M	interleukin-1 receptor-associated kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-146495175-2	chr4	146495075	146495275	+	873.3000490000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR51B_Mm|LTR|ERVK?	-6825.0	NM_001243138	100041433.0	Mm.441741	NM_001243138	ENSMUSG00000056300	Zfp981	Gm13247	zinc finger protein 981	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-35175922-5	chr9	35175739	35175939	+	966.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027030, exon 1 of 6)	exon (NM_027030, exon 1 of 6)	148.0	NM_027030	69305.0	Mm.229110	NM_027030	ENSMUSG00000032040	Dcps	1700001E16Rik|AA408441	decapping enzyme, scavenger	protein-coding	-1.06932346315282	-1.04545378193536	-0.220844647149311	-1.06494782147003	-1.06867040657128	-1.04264807175102	-1.05547001227371	-1.06448932552894	-3.08190232315036	0.346744811462451	1
Merged-chr2-166729848-4	chr2	166729750	166729950	+	987.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16018.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117835330-2	chr11	117835230	117835430	+	916.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027827, intron 7 of 10)	intron (NM_027827, intron 7 of 10)	-9316.0	NM_009387	21877.0	Mm.2661	NM_009387	ENSMUSG00000025574	Tk1	D530002A18Rik|Tk-1|Tk1a|Tk1b	thymidine kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-39636745-3	chr18	39636645	39636845	+	694.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-136752.0	NM_011033	18459.0	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-84705620-4	chr2	84705529	84705729	+	962.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144887, intron 2 of 11)	intron (NM_144887, intron 2 of 11)	9535.0	NM_144887	228136.0	Mm.288508	NM_144887	ENSMUSG00000034075	Zdhhc5	1110032A17Rik|AI451382|Zisp	zinc finger, DHHC domain containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-67607569-4	chr18	67607504	67607704	+	990.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33751.0	NM_001357523	225659.0	Mm.111928	NM_001081073	ENSMUSG00000073542	Cep76	6230425F05Rik|9630013E05	centrosomal protein 76	protein-coding	1.08229275549894	1.0335836907832	0.988244760272784	0.513291131929426	0.786765800912724	0.530197212136118	1.11615200681033	0.514437812007181	-0.837255156589315	0.610608634727005	1
Merged-chr16-92670501-3	chr16	92670399	92670599	+	843.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111022, intron 4 of 6)	intron (NM_001111022, intron 4 of 6)	26830.0	NM_001111023	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-156002549-4	chr1	156002453	156002653	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29298.0	NM_001039184	74081.0	Mm.260247	NM_001039184	ENSMUSG00000033671	Cep350	4933409L06Rik|6430546F08Rik	centrosomal protein 350	protein-coding	5.55940620231073	5.46295838391098	5.42631927587049	5.40704828241883	5.8824240372085	4.99740004744413	5.13293871416003	5.02767847927566	-0.161498288892461	0.593399573760734	0.9706660979479
Merged-chr8-3313619-2	chr8	3313491	3313691	+	634.0	f0_balb.idr|f1_balb.idr	Intergenic	RMER10B|LTR|ERVL	-33974.0	NM_001330056	16337.0	Mm.268003	NM_010568	ENSMUSG00000005534	Insr	4932439J01Rik|CD220|D630014A15Rik|IR|IR-A|IR-B	insulin receptor	protein-coding	1.83884444462623	1.69729911340409	1.89362316760727	1.07356633832931	1.23887753685201	1.8519868101986	1.65397659479435	2.04512493500173	0.201460105220998	0.857601818692079	0.998431161219273
Merged-chr14-103054986-2	chr14	103054886	103055086	+	715.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008392, exon 5 of 5)	exon (NM_008392, exon 5 of 5)	7974.0	NM_008392	16365.0	Mm.4662	NM_008392	ENSMUSG00000022126	Acod1	AI323667|CAD|Irg1	aconitate decarboxylase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-101159599-4	chr4	101159492	101159692	+	860.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146145, intron 17 of 24)	intron (NM_146145, intron 17 of 24)	90554.0	NM_183024	242570.0	Mm.185636	NM_183024	ENSMUSG00000035275	Raver2	A430091O22Rik	ribonucleoprotein, PTB-binding 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-97241099-4	chr13	97240978	97241178	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007930)	promoter-TSS (NM_007930)	-27.0	NM_007930	13803.0	Mm.241073	NM_007930	ENSMUSG00000041773	Enc1	Nrpb|PIG10	ectodermal-neural cortex 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80538373-3	chr10	80538255	80538455	+	891.7999880000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026094, intron 1 of 27)	intron (NM_026094, intron 1 of 27)	769.0	NM_026094	67331.0	Mm.52511	NM_026094	ENSMUSG00000003341	Atp8b3	1700042F02Rik|1700056N23Rik|ATPIK|SAPLT	ATPase, class I, type 8B, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-101932173-3	chr5	101932079	101932279	+	900.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 15 of 66)	B3A|SINE|B2	137742.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-76495459-4	chr11	76495317	76495517	+	938.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346670)	promoter-TSS (NM_001346670)	-922.0	NM_001346670	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	3.39212725874111	3.55741106153199	3.15729735197275	2.70755131147606	3.41975315486706	3.95201971356467	3.94827917979945	2.97373126633464	0.609498342525363	0.288344956892632	0.793815200967874
Merged-chr7-18910564-4	chr7	18910449	18910649	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033314)	promoter-TSS (NM_001033314)	-145.0	NM_001033314	232933.0	Mm.333624	NM_001033314	ENSMUSG00000074358	Ccdc61	C530028I08Rik|Gm159	coiled-coil domain containing 61	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102388969-2	chr12	102388869	102389069	+	840.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177620, intron 9 of 9)	intron (NM_177620, intron 9 of 9)	50844.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118356396-3	chr11	118356295	118356495	+	838.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011594)	promoter-TSS (NM_011594)	-984.0	NM_011594	21858.0	Mm.206505	NM_011594	ENSMUSG00000017466	Timp2	D11Bwg1104e|Timp-2	tissue inhibitor of metalloproteinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-25353762-2	chr15	25353662	25353862	+	617.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60002.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-109342228-3	chr3	109342109	109342309	+	850.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020505, intron 1 of 26)	intron (NM_020505, intron 1 of 26)	1526.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-87082568-2	chr3	87082468	87082668	+	708.75	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_130867, exon 16 of 16)	3' UTR (NM_130867, exon 16 of 16)	-83228.0	NM_007639	12479.0	Mm.1894	NM_007639	ENSMUSG00000028076	Cd1d1	AI747460|CD1.1|Cd1a|Cd1d|Ly-38	CD1d1 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-104788825-4	chr3	104788755	104788955	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291859)	promoter-TSS (NM_001291859)	-179.0	NM_007484	11853.0	Mm.262	NM_007484	ENSMUSG00000002233	Rhoc	AI324259|Arh9|Arhc	ras homolog family member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-122934536-3	chr6	122934446	122934646	+	580.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_199311)	TTS (NM_199311)	12698.0	NM_199311	269799.0	Mm.297275	NM_199311	ENSMUSG00000049037	Clec4a1	BC049354|Dcir4	C-type lectin domain family 4, member a1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-30693765-1	chr12	30693665	30693865	+	570.0	f1_balb.idr	Intergenic	Intergenic	109322.0	NM_172049	211986.0	Mm.34035	NM_172049	ENSMUSG00000043061	Tmem18	BC024093	transmembrane protein 18	protein-coding	-0.0965333470170024	-0.403282241101758	-0.406078662006734	-0.151342532602506	-0.411191599009209	-0.402647045425891	-0.123169575614284	-0.267976122231751	-0.482966279398753	0.842703938048627	1
Merged-chr6-124733803-2	chr6	124733703	124733903	+	792.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013545)	promoter-TSS (NM_013545)	-649.0	NM_013545	15170.0	Mm.271799	NM_013545	ENSMUSG00000004266	Ptpn6	70Z-SHP|Hcph|PTPTY-42|Ptp1C|SH-PTP1|SHP-1|hcp|me	protein tyrosine phosphatase, non-receptor type 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-107023025-3	chr13	107022932	107023132	+	863.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145779)	promoter-TSS (NM_001145779)	462.0	NR_015471	100040322.0	Mm.133867	NR_015471	ENSMUSG00000071181	3830408C21Rik	-	RIKEN cDNA 3830408C21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75131507-1	chr11	75131407	75131607	+	570.0	f0_balb.idr	intron (NM_001002764, intron 13 of 18)	intron (NM_001002764, intron 13 of 18)	36645.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-83553038-2	chr9	83552938	83553138	+	802.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_172507, intron 1 of 3)	intron (NM_172507, intron 1 of 3)	4700.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	0.916144015016328	1.23929270360167	0.751905008396077	2.09977127081458	0.923632021324719	1.24992627115683	0.756104253860185	2.11285583891813	0.0312534743493205	0.981876447415272	0.998431161219273
Merged-chr11-79120299-4	chr11	79120196	79120396	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013571, intron 1 of 17)	intron (NM_013571, intron 1 of 17)	26177.0	NM_013571	16706.0	Mm.4745	NM_013571	ENSMUSG00000018334	Ksr1	AW492498|B-KSR1|D11Bhm183e|D11Bhm184e|Ksr|RSU2|hb|mKSR1	kinase suppressor of ras 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117126096-2	chr8	117125996	117126196	+	763.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021486, intron 7 of 10)	B1_Mur4|SINE|Alu	30231.0	NM_001163028	63857.0	Mm.174133	NM_021486	ENSMUSG00000031845	Bco1	Bcdo|Bcdo1|Bcmo1|CMO1|Cmoi|beta-CD|betaCMOOX	beta-carotene oxygenase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-78465778-4	chr11	78465747	78465947	+	834.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026740, exon 1 of 5)	exon (NM_026740, exon 1 of 5)	146.0	NM_026740	52466.0	Mm.131618	NM_026740	ENSMUSG00000020829	Slc46a1	1110002C08Rik|D11Ertd18e|HCP1|Pcft	solute carrier family 46, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64341127-4	chr5	64341020	64341220	+	837.345825	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 17 of 18)	MLT2B3|LTR|ERVL	110763.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	-0.123521891972083	-0.422089945200557	0.69840352358151	-0.432398584609188	-0.438848332691921	-0.420792865666353	-0.426600144886408	-0.431606933623925	-3.89166526744123	0.118397275510275	1
Merged-chr1-34464781-4	chr1	34464683	34464883	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011206, intron 5 of 14)	L1MB8|LINE|L1	5037.0	NM_011206	19253.0	Mm.361	NM_011206	ENSMUSG00000026126	Ptpn18	FLP1|HSCF|PTP-HSCF|PTP-K1|Ptpk1	protein tyrosine phosphatase, non-receptor type 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-48814607-2	chr11	48814507	48814707	+	837.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145377, intron 1 of 5)	B1_Mur2|SINE|Alu	2784.0	NM_145377	211007.0	Mm.794	NM_145377	ENSMUSG00000040365	Trim41	AW552703|BC020156|R75223|RINCK	tripartite motif-containing 41	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-95413883-4	chr11	95413782	95413982	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025287)	promoter-TSS (NM_025287)	-201.0	NM_025287	20747.0	Mm.285454	NM_025287	ENSMUSG00000057522	Spop	AI315626|Pcif1|TEF2	speckle-type POZ protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5664332-2	chr17	5664223	5664423	+	658.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 2 of 8)	B4A|SINE|B4	-134334.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-79660094-2	chr17	79659994	79660194	+	666.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_201361, intron 5 of 10)	L1_Mus4|LINE|L1	45194.0	NM_201361	381110.0	Mm.209801	NM_201361	ENSMUSG00000036368	Rmdn2	AW061290|Fam82a1|RMD-2|mRMD-2	regulator of microtubule dynamics 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3851037-3	chr19	3850953	3851153	+	866.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013490)	promoter-TSS (NM_013490)	-720.0	NM_001271496	12660.0	Mm.225505	NM_013490	ENSMUSG00000024843	Chka	CK|CK/EK-alpha|Chetk-alpha|Chk|ChoK|EK|EtnK-alpha	choline kinase alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-20477690-4	chr11	20477599	20477799	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65554.0	NM_021372	58172.0	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	4.0387686148107	4.00496683598499	4.406332565609	4.86213793582917	4.33598378530727	3.59201261299482	2.97344055393251	3.92110887101649	-0.76521848703434	0.11447643190128	0.530577477447165
Merged-chr8-84665062-4	chr8	84664986	84665186	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2234.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	2.1564635952532	2.79141780232252	4.03792496532395	3.979579239198	2.93396653013321	2.47410158210459	3.19006851483566	3.56410490973847	-0.584211342497063	0.399381716881013	0.885176145862419
Merged-chr2-122765335-4	chr2	122765210	122765410	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162503)	promoter-TSS (NM_001162503)	-49.0	NM_001162503	59010.0	Mm.28986	NM_021507	ENSMUSG00000005803	Sqor	0610039J17Rik|4930557M22Rik|Sqrdl	sulfide quinone oxidoreductase	protein-coding	5.66327537479056	5.29963982968719	5.78755667213723	5.80759327247833	6.07200763575724	5.03987007649701	6.0814944840253	6.30471110968826	0.335883381163922	0.243634608290374	0.740782572292933
Merged-chr5-30906551-1	chr5	30906451	30906651	+	819.0	f1_balb.idr	TTS (NM_024460)	TTS (NM_024460)	1237.0	NM_001134692	67695.0	Mm.21450	NM_024460	ENSMUSG00000038803	Ost4	2310016E02Rik	oligosaccharyltransferase complex subunit 4 (non-catalytic)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-63384990-2	chr10	63384890	63385090	+	898.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253685, intron 1 of 4)	intron (NM_001253685, intron 1 of 4)	-1573.0	NM_013888	30045.0	Mm.32550	NM_013888	ENSMUSG00000036764	Dnajc12	Jdp1|mJDP1	DnaJ heat shock protein family (Hsp40) member C12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-74500068-2	chr7	74499968	74500168	+	628.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038643, intron 2 of 10)	intron (NM_001038643, intron 2 of 10)	54712.0	NM_023908	108116.0	Mm.425467	NM_023908	ENSMUSG00000025790	Slco3a1	5830414C08Rik|Anr1|MJAM|OATP-D|R75096|Slc21a11	solute carrier organic anion transporter family, member 3a1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71307501-1	chr8	71307401	71307601	+	545.5	f1_c57bl6.idr	intron (NM_001142322, intron 2 of 39)	MTD|LTR|ERVL-MaLR	34787.0	NM_001142323	17925.0	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69800338-2	chr11	69800240	69800440	+	628.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010198, intron 1 of 5)	intron (NM_010198, intron 1 of 5)	1376.0	NM_001291104	14166.0	Mm.269011	NM_010198	ENSMUSG00000042826	Fgf11	Fgf-11|Fhf-3|Fhf3	fibroblast growth factor 11	protein-coding	2.49041183558261	1.23245979956993	1.47165190239222	1.98445259821823	3.1103957027173	1.77345461757194	1.48335967948745	3.05907393005968	1.43324280876983	0.158373440566612	0.616536190758665
Merged-chr16-90045209-2	chr16	90045109	90045309	+	558.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70510.0	NM_001145886	21844.0	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-34790467-4	chr2	34790351	34790551	+	868.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145522, intron 4 of 7)	ORR1A2|LTR|ERVL-MaLR	9461.0	NM_145522	227746.0	Mm.158705	NM_145522	ENSMUSG00000070953	Rabepk	8430412M01Rik|9530020D24Rik|AV073337|C87311|Rab9p40	Rab9 effector protein with kelch motifs	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-88134708-3	chr1	88134602	88134802	+	583.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145079)	promoter-TSS (NM_145079)	-107.0	NM_145079	94284.0	Mm.300095	NM_145079	ENSMUSG00000054545	Ugt1a6a	UDPGT|UDPGT 1-6|UGT1-06|UGT1.6|Ugt1a6|Ugt1a7	UDP glucuronosyltransferase 1 family, polypeptide A6A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-43829158-1	chr10	43829058	43829258	+	661.0	f0_balb.idr	intron (NR_131055, intron 1 of 2)	ORR1D1|LTR|ERVL-MaLR	3251.0	NR_131055	71018.0	Mm.410796	NR_131055	ENSMUSG00000111342	4933404K13Rik	-	RIKEN cDNA 4933404K13 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-28677209-4	chr19	28677143	28677343	+	886.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045330)	promoter-TSS (NR_045330)	-981.0	NR_045330	320176.0	Mm.406716	NR_045330	ENSMUSG00000097735	D930032P07Rik	-	RIKEN cDNA D930032P07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116533105-4	chr11	116533032	116533232	+	745.483337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025367)	promoter-TSS (NM_025367)	-106.0	NM_025367	20698.0	Mm.20944	NM_011451	ENSMUSG00000061878	Sphk1	1110006G24Rik|Sk1|Spk1	sphingosine kinase 1	protein-coding	0.407454182729655	0.163916757201211	0.715485964508991	0.153622406466567	0.522636466343359	0.165227316445546	0.726554161344166	0.154405364014231	0.230075093625936	0.908680020857831	1
Merged-chr5-64038715-4	chr5	64038607	64038807	+	918.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6266.0	NR_045384	74757.0	Mm.159329	NR_045384	ENSMUSG00000106219	5830416I19Rik	-	RIKEN cDNA 5830416I19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-75837489-4	chr10	75837383	75837583	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2602.0	NM_010361	14872.0	Mm.24118	NM_010361	ENSMUSG00000033318	Gstt2	AI266894|Yrs|mGSTT2	glutathione S-transferase, theta 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-72844543-3	chr5	72844440	72844640	+	975.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013689, intron 1 of 17)	L1MB5|LINE|L1	23908.0	NM_001113461	21682.0	Mm.319581	NM_013689	ENSMUSG00000029217	Tec	-	tec protein tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-84679075-4	chr3	84678981	84679181	+	980.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177260, intron 1 of 6)	intron (NM_177260, intron 1 of 6)	12889.0	NM_177260	320782.0	Mm.107370	NM_177260	ENSMUSG00000056498	Tmem154	9930117H01Rik	transmembrane protein 154	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-53856897-3	chr1	53856783	53856983	+	760.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001883, intron 19 of 28)	intron (NM_001001883, intron 19 of 28)	7459.0	NR_106149	102465783.0		NR_106149	ENSMUSG00000098443	Mir7681	Gm27806|mmu-mir-7681	microRNA 7681	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-57347941-4	chr17	57347844	57348044	+	812.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10742.0	NM_001355723	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-85186974-3	chr11	85186873	85187073	+	849.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	15877.0	NM_028589	73634.0	Mm.48850	NM_028589	ENSMUSG00000018479	1700125H20Rik	-	RIKEN cDNA 1700125H20 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180973888-4	chr1	180973780	180973980	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144794, intron 22 of 22)	(CAGA)n|Simple_repeat|Simple_repeat	31362.0	NM_144794	208795.0	Mm.185518	NM_144794	ENSMUSG00000026519	Tmem63a	BC014795|Tmem64a	transmembrane protein 63a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53714159-4	chr4	53714029	53714229	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_139309)	promoter-TSS (NM_139309)	-53.0	NM_139309	246179.0	Mm.247210	NM_139309	ENSMUSG00000028414	Fktn	D830030O17Rik|Fcmd	fukutin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-38352686-4	chr6	38352639	38352839	+	900.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028864, intron 1 of 8)	intron (NM_028864, intron 1 of 8)	1864.0	NM_001347122	78781.0	Mm.25243	NM_028421	ENSMUSG00000029826	Zc3hav1	1200014N16Rik|2900058M19Rik|9130009D18Rik|9830115L13Rik|ARTD13|D6Bwg1452e|ZAP	zinc finger CCCH type, antiviral 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133574784-4	chr4	133574715	133574915	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172876)	promoter-TSS (NM_172876)	70.0	NM_172876	242691.0	Mm.40110	NM_172876	ENSMUSG00000028850	Gpatch3	D930035B09Rik|Gpatc3	G patch domain containing 3	protein-coding	3.23321018618499	3.91704682748919	2.43605706173516	2.67940648489019	3.70531216512585	4.28091818407388	3.16332666022627	3.34535478065541	0.768890350713627	0.213839520588896	0.7035593879412
Merged-chr10-34206016-3	chr10	34205894	34206094	+	701.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172508, intron 1 of 5)	B3A|SINE|B2	1557.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-8874818-4	chr10	8874705	8874905	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 1 of 19)	intron (NM_175155, intron 1 of 19)	11265.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	4.08483303101858	3.80252709129766	4.34873104813264	3.79311916366566	3.87123358823956	3.65308572128465	3.70524974288883	3.59253227736137	-0.451324013510277	0.329065181831361	0.831650902600618
Merged-chr11-69092506-4	chr11	69092404	69092604	+	796.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009497)	TTS (NM_009497)	3976.0	NM_009497	22318.0	Mm.28643	NM_009497	ENSMUSG00000020894	Vamp2	Syb-2|Syb2|Vamp-2|sybII	vesicle-associated membrane protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-143581212-2	chr5	143581112	143581312	+	599.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB7|LINE|L1	32506.0	NM_026050	67238.0	Mm.383219	NM_026050	ENSMUSG00000083012	Fam220a	1500026F15Rik|2810453I06Rik|AW047776|Acpin1|Sipar	family with sequence similarity 220, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-129954405-2	chr5	129954305	129954505	+	731.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001327, intron 1 of 1)	intron (NM_001001327, intron 1 of 1)	12296.0	NM_027121	69568.0	Mm.288718	NM_027121	ENSMUSG00000066735	Vkorc1l1	2310024K08Rik	vitamin K epoxide reductase complex, subunit 1-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85746443-4	chr12	85746325	85746525	+	901.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145447)	promoter-TSS (NM_145447)	-114.0	NM_145447	217721.0	Mm.301076	NM_145447	ENSMUSG00000034258	Flvcr2	CCT|Mfsd7c	feline leukemia virus subgroup C cellular receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-60343365-4	chr1	60343305	60343505	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_030013, exon 1 of 13)	exon (NM_030013, exon 1 of 13)	105.0	NM_001313721	77951.0	Mm.197640	NM_030013	ENSMUSG00000049439	Cyp20a1	A930011N14Rik|Cypm	cytochrome P450, family 20, subfamily a, polypeptide 1	protein-coding	5.22913354385834	4.84633175418574	5.49114973581287	4.97308143307384	4.81383951592439	3.95866862214165	5.80767733233203	4.01323142013249	-0.340213691241521	0.421526285799205	0.900322118218157
Merged-chr15-58986638-3	chr15	58986537	58986737	+	914.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144800, intron 3 of 14)	intron (NM_144800, intron 3 of 14)	52827.0	NM_023172	66218.0	Mm.322294	NM_023172	ENSMUSG00000022354	Ndufb9	1190008J14Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-65357453-1	chr14	65357353	65357553	+	569.0	f1_c57bl6.idr	Intergenic	Intergenic	-1223.0	NM_199029	380912.0	Mm.270087	NM_199029	ENSMUSG00000034522	Zfp395	BC053701|Gm910	zinc finger protein 395	protein-coding	0.261847744089291	0.211296285195479	-0.265655742481683	-0.268802881626612	-0.0135800711410032	-0.260639573792111	-0.264754496523953	-0.268253699836055	-2.00458962231836	0.420011018772837	1
Merged-chr2-132463610-4	chr2	132463504	132463704	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-27124.0	NR_028286	70371.0	Mm.394667	NR_028286	ENSMUSG00000086379	1700026D11Rik	-	RIKEN cDNA 1700026D11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4683305-2	chr16	4683205	4683405	+	712.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023646)	promoter-TSS (NM_023646)	-765.0	NM_023646	83945.0	Mm.248337	NM_023646	ENSMUSG00000004069	Dnaja3	1200003J13Rik|1810053A11Rik|C81173|Tid-1|Tid1l	DnaJ heat shock protein family (Hsp40) member A3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-54981772-2	chr12	54981672	54981872	+	924.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013815, intron 2 of 26)	intron (NM_013815, intron 2 of 26)	4564.0	NM_013815	217578.0	Mm.479583	NM_013815	ENSMUSG00000035021	Baz1a	Acf1|B930060C03|BC065123|Gtl5|Wcrf180|cbp146	bromodomain adjacent to zinc finger domain 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-38420276-4	chr18	38420177	38420377	+	955.8583369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355749, intron 1 of 7)	intron (NM_001355749, intron 1 of 7)	1370.0	NM_001355749	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-63953478-1	chr15	63953378	63953578	+	601.0	f0_balb.idr	intron (NM_001360038, intron 3 of 11)	intron (NM_001360038, intron 3 of 11)	39017.0	NR_029414	74460.0	Mm.390801	NR_029414	ENSMUSG00000100127	Gsdmcl-ps	4933426G20Rik	gasdermin C-like, pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-25621403-4	chr2	25621302	25621502	+	974.3583369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001109993, exon 2 of 4)	exon (NM_001109993, exon 2 of 4)	600.0	NM_001040130	51875.0	Mm.271147	NM_001040130	ENSMUSG00000026939	Tmem141	1110065P14Rik|AI663999|D2Ertd217e	transmembrane protein 141	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-113076684-7	chr6	113076551	113076751	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028385)	promoter-TSS (NM_028385)	593.0	NR_027010	14910.0	Mm.280950	NR_027008	ENSMUSG00000086429	Gt(ROSA)26Sor	AV258896|Gtrgeo26|Gtrosa26|R26|ROSA26|Thumpd3as1	gene trap ROSA 26, Philippe Soriano	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76949586-2	chr15	76949486	76949686	+	788.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_054099, exon 3 of 4)	exon (NM_054099, exon 3 of 4)	1325.0	NM_001347540	117171.0	Mm.322968	NM_054099	ENSMUSG00000063236	1110038F14Rik	-	RIKEN cDNA 1110038F14 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-55191902-1	chr15	55191802	55192002	+	549.0	f0_balb.idr	intron (NM_001037937, intron 4 of 8)	L1PB4|LINE|L1	58466.0	NM_001037937	97998.0	Mm.295397	NM_145470	ENSMUSG00000022419	Deptor	Depdc6	DEP domain containing MTOR-interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-35025188-2	chr7	35025088	35025288	+	854.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008820, intron 11 of 14)	intron (NM_008820, intron 11 of 14)	31378.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-50160053-1	chr6	50159953	50160153	+	640.0	f0_balb.idr	intron (NM_001361248, intron 4 of 13)	intron (NM_001361248, intron 4 of 13)	49193.0	NM_001361248	56524.0	Mm.41288	NM_008016	ENSMUSG00000038388	Mpp6	P55t|Pals2	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	protein-coding	0.729996605527047	0.456770340542539	0.447053771976952	0.439478334460758	1.23777062822157	1.26252496733775	1.08991437345706	0.440806883636631	3.12236946089437	0.0850676072867115	1
Merged-chr6-119473887-2	chr6	119473787	119473987	+	791.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_009525, intron 1 of 4)	MT2A|LTR|ERVL	-5781.0	NM_133940	101358.0	Mm.125477	NM_133940	ENSMUSG00000030019	Fbxl14	AW322056|Fbx14l	F-box and leucine-rich repeat protein 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-44136524-8	chr16	44136394	44136594	+	871.3875119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007508, intron 1 of 14)	intron (NM_007508, intron 1 of 14)	2765.0	NM_001358203	11964.0	Mm.217787	NM_007508	ENSMUSG00000052459	Atp6v1a	AI647066|Atp6a1|Atp6a2|Atp6v1a1|VA68|VPP2	ATPase, H+ transporting, lysosomal V1 subunit A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-118468301-3	chr7	118468186	118468386	+	814.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20064.0	NM_001362179	110058.0	Mm.156558	NM_138649	ENSMUSG00000058420	Syt17	Bk|sytXVII	synaptotagmin XVII	protein-coding	2.06806464303477	1.30598036792046	2.03193994322879	2.27150539760121	0.746400875791967	0.817167002751295	0.795105330724961	0.775577288478661	-5.38252481547718	0.000183122950163191	0.00501623094990403
Merged-chr10-117900365-2	chr10	117900265	117900465	+	993.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-25094.0	NR_045342	71067.0	Mm.410793	NR_045342	ENSMUSG00000112500	4933411E08Rik	-	RIKEN cDNA 4933411E08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-92433646-4	chr16	92433499	92433699	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081549, intron 1 of 3)	intron (NM_001081549, intron 1 of 3)	32570.0	NM_001081549	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-88650258-6	chr8	88650064	88650264	+	885.611084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145857, intron 1 of 12)	intron (NM_145857, intron 1 of 12)	2817.0	NM_145857	257632.0	Mm.222633	NM_145857	ENSMUSG00000055994	Nod2	ACUG|BLAU|CD|Card15|F830032C23Rik|IBD1|Nlrc2	nucleotide-binding oligomerization domain containing 2	protein-coding	4.07173679025556	2.88978703012836	2.92250420504519	2.95583718714595	2.92565739973879	4.31697043034074	4.18643891926073	3.08436631146118	0.64782663246376	0.300717859740819	0.801975674075776
Merged-chr6-71272029-2	chr6	71271929	71272129	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145568)	promoter-TSS (NM_145568)	10.0	NM_145568	57896.0	Mm.250569	NM_145568	ENSMUSG00000053012	Krcc1	AA792894	lysine-rich coiled-coil 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-32597628-2	chr14	32597528	32597728	+	613.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1780.0	NM_001347590	107751.0	Mm.119274	NM_001001796	ENSMUSG00000041730	Prrxl1	Drg11|Drgx	paired related homeobox protein-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-153572641-2	chr3	153572541	153572741	+	613.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_011372, intron 1 of 4)	intron (NM_011372, intron 1 of 4)	152492.0	NM_011372	20447.0	Mm.296453	NM_011372	ENSMUSG00000052544	St6galnac3	Siat7c	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-12473473-4	chr19	12473347	12473547	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172442, intron 7 of 8)	intron (NM_172442, intron 7 of 8)	12668.0	NM_010821	17476.0	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	3.60237104274889	3.29872692288358	2.75369465316726	3.72634635719044	4.3731274145433	4.48321991598198	4.44362577425968	4.31924617322271	1.3944566599309	0.0027285463184173	0.0423689802351649
Merged-chr15-27469374-4	chr15	27469264	27469464	+	917.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020332, intron 1 of 11)	intron (NM_020332, intron 1 of 11)	2687.0	NM_020332	11732.0	Mm.265264	NM_020332	ENSMUSG00000022265	Ank	Ankh|D15Ertd221e|ank|mKIAA1581	progressive ankylosis	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-116966977-2	chr2	116966877	116967077	+	654.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	66825.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124033309-2	chr5	124033209	124033409	+	646.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1049.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	1.0365691469996	2.05658790999017	1.87257195333876	1.08870617685769	0.833271959928926	0.900404681057203	2.25544085592005	1.44708346266995	-0.243020633025913	0.852136733613389	0.998431161219273
Merged-chr14-117625512-4	chr14	117625432	117625632	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011821, intron 4 of 8)	intron (NM_011821, intron 4 of 8)	328315.0	NR_105747	102465148.0		NR_105747	ENSMUSG00000098648	Mir6239	Gm28025|mmu-mir-6239	microRNA 6239	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5570429-4	chr17	5570346	5570546	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	77846.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-42271582-4	chr10	42271475	42271675	+	892.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019740, intron 2 of 3)	intron (NM_019740, intron 2 of 3)	5167.0	NM_019740	56484.0	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-88705966-4	chr1	88705866	88706066	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3775.0	NM_177305	320982.0	Mm.27968	NM_177305	ENSMUSG00000049866	Arl4c	A630084M22Rik|Arl7|LAK	ADP-ribosylation factor-like 4C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-86021760-2	chr1	86021635	86021835	+	652.5	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_001122732)	promoter-TSS (NM_001122732)	-207.0	NM_001122732	70060.0	Mm.196313	NM_027029	ENSMUSG00000026226	Spata3	1700011N12Rik|1700029H01Rik|4930424D10Rik|Mtsarg1|Tsarg1	spermatogenesis associated 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-125476899-2	chr5	125476799	125476999	+	671.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030210, intron 1 of 17)	intron (NM_030210, intron 1 of 17)	1026.0	NM_030210	78894.0	Mm.431573	NM_030210	ENSMUSG00000029482	Aacs	2210408B16Rik|SUR5	acetoacetyl-CoA synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120129007-2	chr8	120128907	120129107	+	646.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172286, intron 1 of 12)	B3A|SINE|B2	14855.0	NM_001163761	234797.0	Mm.101958	NM_172286	ENSMUSG00000031824	6430548M08Rik	AW049007|Kiaa0513|mKIAA0513	RIKEN cDNA 6430548M08 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-142630603-1	chr3	142630503	142630703	+	622.666687	f0_balb.idr	exon (NM_010260, exon 6 of 11)	exon (NM_010260, exon 6 of 11)	-6657.0	NR_105802	102465200.0		NR_105802	ENSMUSG00000098871	Mir6381	Gm27963|mmu-mir-6381	microRNA 6381	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-96389315-2	chr9	96389215	96389415	+	623.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-24884.0	NM_001357212	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-39442714-2	chr10	39442614	39442814	+	578.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001122892, intron 2 of 12)	intron (NM_001122892, intron 2 of 12)	72915.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-126682340-2	chr4	126682240	126682440	+	620.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011970, intron 1 of 5)	intron (NM_011970, intron 1 of 5)	4697.0	NM_011970	26445.0	Mm.22233	NM_011970	ENSMUSG00000028837	Psmb2	AU045357|AW108089|C7-I|D4Wsu33e|HC7-I	proteasome (prosome, macropain) subunit, beta type 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-32222239-2	chr19	32222139	32222339	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 5 of 9)	intron (NM_144792, intron 5 of 9)	-11226.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-104409147-2	chr9	104409041	104409241	+	861.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16972.0	NR_035516	100316725.0		NR_035516	ENSMUSG00000089406	Mir2136	mmu-mir-2136	microRNA 2136	ncRNA	0.403545483312571	0.767588681379839	0.275144530411722	0.270180800123819	0.908632651548484	0.638840693722461	0.276563032435311	0.575282140346678	1.14341657271576	0.531498684821079	1
Merged-chr4-3481796-2	chr4	3481681	3481881	+	818.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55309.0	NR_037306	100499523.0		NR_037306	ENSMUSG00000094253	Mir3471-2	mmu-mir-3471-2	microRNA 3471-2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-91231975-4	chr1	91231873	91232073	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18331.0	NM_001355763	67921.0	Mm.337238	NM_026454	ENSMUSG00000034343	Ube2f	2510010F15Rik|AI851109	ubiquitin-conjugating enzyme E2F (putative)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-24474101-3	chr7	24473999	24474199	+	902.166626	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011113, intron 5 of 6)	intron (NM_011113, intron 5 of 6)	-7924.0	NM_153112	260299.0	Mm.178322	NM_153112	ENSMUSG00000054793	Cadm4	Igdf4c|Igsf4c|Tsll2	cell adhesion molecule 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-4620314-1	chr2	4620214	4620414	+	671.0	f0_c57.idr	Intergenic	Intergenic	31821.0	NM_026045	67229.0	Mm.38529	NM_026045	ENSMUSG00000039449	Prpf18	2810441A10Rik	pre-mRNA processing factor 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-106338082-4	chr8	106337996	106338196	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021491)	promoter-TSS (NM_021491)	-108.0	NM_021491	58994.0	Mm.23298	NM_021491	ENSMUSG00000031906	Smpd3	4631433G07Rik|AI427456|AW537966|fro|nSMase2	sphingomyelin phosphodiesterase 3, neutral	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-122304482-3	chr6	122304352	122304552	+	683.472229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-4268.0	NM_010749	17113.0	Mm.249225	NM_010749	ENSMUSG00000007458	M6pr	CD-MPR|Mpr46	mannose-6-phosphate receptor, cation dependent	protein-coding	2.6869750438119	2.79125140266512	3.01597295512181	3.01886990281777	2.60951651984897	3.23678647218328	3.56243359898823	1.52625857030048	0.104646774073238	0.891744933815062	0.998431161219273
Merged-chr2-79428509-2	chr2	79428409	79428609	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001048176, intron 1 of 12)	intron (NM_001048176, intron 1 of 12)	479.0	NM_001048176	228094.0	Mm.440704	NM_001033295	ENSMUSG00000075256	Cerkl	Gm1958|Rp26	ceramide kinase-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-43592613-2	chr19	43592513	43592713	+	739.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19712.0	NM_008699	18089.0	Mm.56994	NM_008699	ENSMUSG00000044220	Nkx2-3	Nkx-2.3|Nkx2.3|tinman	NK2 homeobox 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-36315067-4	chr13	36314970	36315170	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039189, intron 3 of 5)	intron (NM_001039189, intron 3 of 5)	197427.0	NM_001039189	69955.0	Mm.70690	NM_024274	ENSMUSG00000021420	Fars2	Fars1|pheRS	phenylalanine-tRNA synthetase 2 (mitochondrial)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-102889109-4	chr13	102889001	102889201	+	955.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175171, intron 4 of 28)	intron (NM_175171, intron 4 of 28)	128846.0	NR_130171	76624.0	Mm.426384	NR_130171	ENSMUSG00000091906	1700099I09Rik	-	RIKEN cDNA 1700099I09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-16362106-2	chr15	16361997	16362197	+	717.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	-416004.0	NM_009869	12565.0	Mm.439758	NM_009869	ENSMUSG00000025370	Cdh9	-	cadherin 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127538986-2	chr10	127538886	127539086	+	932.3333130000001	f1_balb.idr|f1_c57bl6.idr	exon (NM_008512, exon 89 of 89)	exon (NM_008512, exon 89 of 89)	-4427.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-38806912-6	chr6	38806846	38807046	+	893.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010433, intron 2 of 14)	intron (NM_010433, intron 2 of 14)	30365.0	NM_001136065	15258.0	Mm.23790	NM_010433	ENSMUSG00000061436	Hipk2	1110014O20Rik|B230339E18Rik|Stank	homeodomain interacting protein kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-100775888-4	chr13	100775774	100775974	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021886)	promoter-TSS (NM_021886)	25.0	NM_021886	26886.0	Mm.273502	NM_021886	ENSMUSG00000045273	Cenph	1700021I11Rik|2410018A12Rik|2610042E16Rik|2810046K12Rik|AU044255|CENP-H|ENP	centromere protein H	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-112509652-3	chr13	112509587	112509787	+	866.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45617.0	NM_010560	16195.0	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4065104-4	chr19	4065009	4065209	+	963.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MMVL30-int|LTR|ERV1	-5662.0	NM_001362043	225884.0	Mm.440201	NM_144869	ENSMUSG00000058216	Gstp3	-	glutathione S-transferase pi 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-84385555-2	chr17	84385455	84385655	+	587.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_183021, intron 26 of 37)	intron (NM_183021, intron 26 of 37)	80653.0	NM_183021	240174.0	Mm.246767	NM_177826	ENSMUSG00000024251	Thada	6530405K19|A930021O22|AU019899|BC052885|GITA	thyroid adenoma associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-3541675-4	chr13	3541575	3541775	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008112, intron 1 of 10)	intron (NM_008112, intron 1 of 10)	3600.0	NM_008112	14569.0	Mm.153226	NM_008112	ENSMUSG00000021218	Gdi2	GDI-B|GDIB|Gdi3	guanosine diphosphate (GDP) dissociation inhibitor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-10985536-3	chr17	10985440	10985640	+	939.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001317726, intron 1 of 6)	intron (NM_001317726, intron 1 of 6)	145181.0	NM_016694	50873.0	Mm.311110	NM_016694	ENSMUSG00000023826	Park2	PRKN	Parkinson disease (autosomal recessive, juvenile) 2, parkin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-62229831-2	chr10	62229731	62229931	+	719.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_197996, intron 1 of 7)	B1F1|SINE|Alu	1387.0	NM_197996	70423.0	Mm.416781	NM_197996	ENSMUSG00000037031	Tspan15	1110036D12Rik|2700063A19Rik|AW048364|Tm4sf15	tetraspanin 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-58478615-4	chr13	58478517	58478717	+	983.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-75274.0	NM_001301341	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-144567966-2	chr3	144567866	144568066	+	623.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355234, intron 1 of 6)	intron (NM_001355234, intron 1 of 6)	2250.0	NM_011828	23908.0	Mm.12863	NM_011828	ENSMUSG00000040151	Hs2st1	2OST|AW214369|Hs2st|mKIAA0448	heparan sulfate 2-O-sulfotransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-38523723-2	chr16	38523623	38523823	+	814.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-1060.0	NM_024273	76916.0	Mm.132231	NM_024273	ENSMUSG00000002846	Timmdc1	2810021C21Rik|4930455C21Rik|AV135763	translocase of inner mitochondrial membrane domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-11039038-4	chr8	11038950	11039150	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_046017, intron 1 of 4)	intron (NR_046017, intron 1 of 4)	-30620.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-83064256-4	chr8	83064159	83064359	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177378, intron 6 of 6)	intron (NM_177378, intron 6 of 6)	-101093.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-4678476-4	chr8	4678354	4678554	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	65284.0	NM_145591	233987.0	Mm.102799	NM_145591	ENSMUSG00000058748	Zfp958	-	zinc finger protein 958	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101554364-2	chr11	101554264	101554464	+	598.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008676, intron 2 of 23)	B3|SINE|B2	1710.0	NM_001252223	17966.0	Mm.784	NM_008676	ENSMUSG00000017119	Nbr1	mKIAA0049	neighbor of Brca1 gene 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-38210023-1	chr7	38209923	38210123	+	782.0	f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	17971.0	NM_024413	72287.0	Mm.333798	NM_024413	ENSMUSG00000074170	Plekhf1	1810013P09Rik|APPD|LAPF|PHAFIN1|ZFYVE15	pleckstrin homology domain containing, family F (with FYVE domain) member 1	protein-coding	1.00915770677863	2.34901964879209	0.849457741935929	1.05903721100646	1.33360296174556	1.66888892305719	1.73087136949016	1.06414222991872	-0.0899263006099826	0.943226813323939	0.998431161219273
Merged-chr16-21289820-4	chr16	21289726	21289926	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_046162, intron 1 of 4)	intron (NR_046162, intron 1 of 4)	7046.0	NR_046162	328646.0	Mm.404748	NR_046162	ENSMUSG00000096918	Gm16863	A830060N17	predicted gene, 16863	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-108722283-4	chr3	108722127	108722327	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029522)	promoter-TSS (NM_029522)	72.0	NM_029522	76123.0	Mm.226941	NM_029522	ENSMUSG00000027883	Gpsm2	6230410J09Rik|LGN|Pins	G-protein signalling modulator 2 (AGS3-like, C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5560308-1	chr17	5560208	5560408	+	570.0	f0_balb.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	67708.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-73938257-2	chr17	73938157	73938357	+	839.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011723, intron 4 of 35)	intron (NM_011723, intron 4 of 35)	11939.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-112273645-1	chr2	112273545	112273745	+	595.0	f0_balb.idr	intron (NM_133649, intron 1 of 24)	B3A|SINE|B2	7331.0	NM_133649	107723.0	Mm.491155	NM_133648	ENSMUSG00000027130	Slc12a6	9530023I19Rik|KCC3|gaxp	solute carrier family 12, member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-112369184-3	chr7	112369082	112369282	+	889.666626	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027587, intron 1 of 9)	intron (NM_027587, intron 1 of 9)	874.0	NM_027587	100504195.0	Mm.291129	NM_027587	ENSMUSG00000030771	Micalcl	4921517J23Rik	MICAL C-terminal like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-93996654-4	chr13	93996553	93996753	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61143.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-38284056-2	chr18	38283956	38284156	+	775.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_017378, exon 1 of 4)	exon (NM_017378, exon 1 of 4)	345.0	NM_017378	53601.0	Mm.12862	NM_017378	ENSMUSG00000024440	Pcdh12	Pcdh14|VE-cad-2	protocadherin 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-8713828-11	chr19	8713706	8713906	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008577)	promoter-TSS (NM_008577)	91.0	NM_008577	17254.0	Mm.4114	NM_008577	ENSMUSG00000010095	Slc3a2	4F2|4F2HC|AI314110|Cd98|Ly-10|Ly-m10|Ly10|Mdu1|Mgp-2hc|NACAE	solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-77621683-3	chr10	77621564	77621764	+	947.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019803)	promoter-TSS (NM_019803)	-657.0	NM_019803	22213.0	Mm.458125	NM_019803	ENSMUSG00000009293	Ube2g2	1110003O05Rik|D10Xrf369|UBC7|Ubc7p	ubiquitin-conjugating enzyme E2G 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-25720085-4	chr8	25719985	25720185	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_121643)	promoter-TSS (NR_121643)	37.0	NR_121643	71910.0	Mm.385055	NM_028000	ENSMUSG00000031570	Plpp5	1810019D05Rik|2310022A04Rik|AW045471|Ppapdc1|Ppapdc1b	phospholipid phosphatase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-45860580-4	chr1	45860487	45860687	+	984.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	65007.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-54509234-2	chr8	54509134	54509334	+	685.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20764.0	NM_029701	76687.0	Mm.86437	NM_029701	ENSMUSG00000054408	Spcs3	1810011E08Rik|SPC22/23	signal peptidase complex subunit 3 homolog (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-28516297-3	chr10	28516188	28516388	+	971.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359356, intron 13 of 30)	intron (NM_001359356, intron 13 of 30)	-152072.0	NM_001305663	210757.0	Mm.123021	NM_178666	ENSMUSG00000049109	Themis	E430004N04Rik|Gasp|Spot|Tsepa|thylex	thymocyte selection associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-29789354-2	chr11	29789261	29789461	+	959.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146016, intron 24 of 41)	intron (NM_146016, intron 24 of 41)	36307.0	NM_176829	216622.0	Mm.443260	NM_176829	ENSMUSG00000078157	4931440F15Rik	Fem1ab	RIKEN cDNA 4931440F15 gene	protein-coding	0.716280468571289	0.229677706286458	-0.140340045282998	-0.144422544985663	0.130922035892585	-0.13386954168876	-0.139174230367612	-0.1437088420406	-2.34622415888447	0.318345891152825	1
Merged-chr16-91367269-4	chr16	91367156	91367356	+	997.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5527.0	NM_010509	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-31229032-2	chr2	31228932	31229132	+	792.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-16891.0	NM_019681	14299.0	Mm.249318	NM_019681	ENSMUSG00000062661	Ncs1	9430075O15Rik|A730032G13Rik|AI836659|Freq|Mfreq|NCS-1	neuronal calcium sensor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106648513-4	chr11	106648331	106648531	+	954.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35501.0	NM_198292	21763.0	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-62861128-2	chr9	62861028	62861228	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001102468, intron 2 of 3)	intron (NM_001102468, intron 2 of 3)	896.0	NR_003965	677044.0	Mm.422004	NR_003965	ENSMUSG00000074250	Gm10653	-	ribsomal protein S2 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-80156318-4	chr11	80156200	80156400	+	809.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172133, intron 2 of 10)	intron (NM_172133, intron 2 of 10)	2138.0	NM_172133	216991.0	Mm.341520	NM_172133	ENSMUSG00000020709	Adap2	Centa2	ArfGAP with dual PH domains 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-114526446-4	chr7	114526350	114526550	+	971.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011055, intron 11 of 15)	Lx7|LINE|L1	36522.0	NR_110407	244209.0	Mm.108037	NM_177382	ENSMUSG00000030670	Cyp2r1	-	cytochrome P450, family 2, subfamily r, polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-116135801-3	chr6	116135704	116135904	+	799.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177412, intron 2 of 5)	intron (NM_177412, intron 2 of 5)	57570.0	NM_177412	330401.0	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-32170327-3	chr4	32170288	32170488	+	741.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	206281.0	NM_172688	26409.0	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding	-1.01086603689304	-0.993717007981185	-0.563866264649745	-0.848416978858896	-0.86919259326856	-0.991258361369741	-1.00249424054008	-1.00733623366568	-1.73863231040887	0.557101510368285	1
Merged-chr8-116372826-2	chr8	116372726	116372926	+	743.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-132189.0	NM_029297	75465.0	Mm.23114	NM_029297	ENSMUSG00000034467	Dynlrb2	1700009A04Rik|DNLC2B|Dncl2b	dynein light chain roadblock-type 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-33040140-1	chr12	33040040	33040240	+	591.0	f1_c57bl6.idr	intron (NM_001024478, intron 16 of 19)	intron (NM_001024478, intron 16 of 19)	52735.0	NM_001024478	68764.0	Mm.60083	NM_001024478	ENSMUSG00000035860	Cdhr3	1110049B09Rik|BB172694|Cdh28	cadherin-related family member 3	protein-coding	1.14144179588889	2.67982986291167	1.69028008881393	2.59088598408798	1.57133797867063	1.9535765016159	2.84401638343733	1.8255370204187	-0.0682708883649487	0.946976446239967	0.998431161219273
Merged-chr16-78490415-4	chr16	78490313	78490513	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69903.0	NR_040569	75818.0	Mm.410817	NR_040569		4930478L05Rik	-	RIKEN cDNA 4930478L05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-23872597-2	chr18	23872497	23872697	+	890.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162941, intron 5 of 7)	intron (NM_001162941, intron 5 of 7)	68627.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-88958841-1	chr11	88958741	88958941	+	561.0	f1_c57bl6.idr	Intergenic	MYSERV6-int|LTR|ERVK	-3399.0	NM_029023	74617.0	Mm.34126	NM_029023	ENSMUSG00000000278	Scpep1	2410018F01Rik|4833411K15Rik|AI957256|Risc	serine carboxypeptidase 1	protein-coding	2.78551109894337	2.00815129946823	2.57269200576087	2.32536956119222	1.48778075091101	1.672255491207	1.13637507684789	1.10973958924755	-3.18784021717225	0.00370311079525172	0.0529768561066338
Merged-chr2-122312833-3	chr2	122312743	122312943	+	724.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305262, intron 3 of 9)	intron (NM_001305262, intron 3 of 9)	887.0	NM_001305262	213696.0	Mm.247121	NM_145395	ENSMUSG00000027224	Duoxa1	BC019755|Nip|Nip1	dual oxidase maturation factor 1	protein-coding	-2.05752322593321	-2.15521190974092	-2.16307242109104	-2.16952927915413	-2.17938029103484	-2.15350850414045	-2.16129297361887	-2.16837350464794	-0.683654500252594	0.846597994014493	1
Merged-chr8-125721811-2	chr8	125721711	125721911	+	992.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-12392.0	NM_025636	66566.0	Mm.25296	NM_025636	ENSMUSG00000031851	Ntpcr	2310079N02Rik|AI449709	nucleoside-triphosphatase, cancer-related	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-131882922-2	chr3	131882822	131883022	+	575.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-202370.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-15984365-2	chr16	15984268	15984468	+	550.0	f0_c57.idr|f1_c57bl6.idr	intron (NM_001355731, intron 7 of 18)	intron (NM_001355731, intron 7 of 18)	97082.0	NM_007679	12609.0	Mm.347407	NM_007679	ENSMUSG00000071637	Cebpd	c/EBPdelta	CCAAT/enhancer binding protein (C/EBP), delta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-54882656-1	chr18	54882556	54882756	+	550.0	f1_c57bl6.idr	Intergenic	Intergenic	107524.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-41608654-2	chr3	41608554	41608754	+	793.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001130184, intron 9 of 10)	intron (NM_001130184, intron 9 of 10)	43774.0	NM_001130186	269424.0	Mm.286285	NM_172303	ENSMUSG00000025764	Jade1	AU041499|D530048A03Rik|Phf17|mKIAA1807	jade family PHD finger 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-35447879-1	chr13	35447779	35447979	+	577.0	f0_balb.idr	Intergenic	L1MB2|LINE|L1	-211983.0	NM_009881	12593.0	Mm.29002	NM_009881	ENSMUSG00000059288	Cdyl	AI325931	chromodomain protein, Y chromosome-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-87030301-2	chr11	87030201	87030401	+	650.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR30D2_MM|LTR|ERV1	-36539.0	NM_001005341	77864.0	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55769008-2	chr19	55768908	55769108	+	682.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001331146, intron 4 of 14)	intron (NM_001331146, intron 4 of 14)	27198.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-34859902-4	chr18	34859804	34860004	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1303.0	NM_007913	13653.0	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116132549-2	chr11	116132449	116132649	+	676.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_024177, exon 8 of 9)	exon (NM_024177, exon 8 of 9)	-1421.0	NM_178802	338364.0	Mm.439976	NM_178802	ENSMUSG00000054517	Trim65	4732463G12Rik	tripartite motif-containing 65	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165994647-1	chr2	165994547	165994747	+	770.0	f1_c57bl6.idr	intron (NM_008679, intron 1 of 22)	intron (NM_008679, intron 1 of 22)	2010.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	-0.875446146948134	-0.863371120466452	-0.543573040122646	-0.871686302105006	-0.874887555151705	-0.860651739939139	-0.868766495307395	-0.333970917773203	0.869646286723812	0.778232340154387	1
Merged-chr5-135374514-2	chr5	135374414	135374614	+	748.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153312, intron 6 of 9)	intron (NR_153312, intron 6 of 9)	4561.0	NM_145414	100609.0	Mm.281189	NM_145414	ENSMUSG00000000916	Nsun5	9830109N13Rik|AI326939|Nol1r|Wbscr20|Wbscr20a	NOL1/NOP2/Sun domain family, member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75733455-4	chr11	75733362	75733562	+	997.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009536, intron 1 of 5)	CpG	575.0	NM_009536	22627.0	Mm.234700	NM_009536	ENSMUSG00000020849	Ywhae	AU019196	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-56313806-4	chr8	56313729	56313929	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008278, intron 4 of 6)	intron (NM_008278, intron 4 of 6)	19277.0	NM_008278	15446.0	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	5.47933992748854	4.94434913818624	5.86974014942574	4.94990850313559	5.29095882794034	4.54526847220474	5.60688210946712	5.07956010899797	-0.21149140830069	0.532728924629226	0.952082138848632
Merged-chr11-98754208-4	chr11	98754108	98754308	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178060, intron 2 of 8)	intron (NM_178060, intron 2 of 8)	12423.0	NM_001313983	21833.0	Mm.265917	NM_178060	ENSMUSG00000058756	Thra	6430529J03Rik|AW259572|Erba|Nr1a1|Rvr|T3R[a]|T3Ralpha|Thra1|Thra2|c-erbA-1|c-erbA-alpha|c-erbAalpha	thyroid hormone receptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116671609-4	chr11	116671501	116671701	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027819)	promoter-TSS (NR_027819)	-59.0	NR_027821	66293.0	Mm.432051	NM_025472	ENSMUSG00000020812	1810032O08Rik	-	RIKEN cDNA 1810032O08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-87338132-4	chr3	87338024	87338224	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	-19757.0	NM_009690	11801.0	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	3.70414775599854	4.01326864143454	5.26168841640035	3.60841308156548	4.70320063599231	3.22533790274802	4.76145378090128	3.12283445020454	-0.203273679310404	0.721752400443937	0.998431161219273
Merged-chr17-27204496-4	chr17	27204392	27204592	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146075)	promoter-TSS (NM_146075)	-54.0	NM_146075	224640.0	Mm.29689	NM_146075	ENSMUSG00000044857	Lemd2	BC026588|Lem2|NET25	LEM domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-146520790-2	chr4	146520690	146520890	+	560.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045468, intron 2 of 2)	intron (NR_045468, intron 2 of 2)	5870.0	NM_001243139	100041433.0	Mm.441741	NM_001243138	ENSMUSG00000056300	Zfp981	Gm13247	zinc finger protein 981	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-36231164-4	chr2	36231046	36231246	+	901.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008969, intron 2 of 10)	intron (NM_008969, intron 2 of 10)	720.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-68582112-4	chr13	68582014	68582214	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_131892)	promoter-TSS (NR_131892)	-10.0	NM_001308475	210009.0	Mm.205514	NM_172480	ENSMUSG00000034617	Mtrr	4732420G08|MSR	5-methyltetrahydrofolate-homocysteine methyltransferase reductase	protein-coding	6.55648032618907	5.9008532159072	6.00587042339411	6.05949296457072	6.13681969583169	5.777822554273	5.86913728090527	5.4383847337851	-0.364547556876768	0.151973187930027	0.605638056505027
Merged-chr1-138614703-4	chr1	138614591	138614791	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021605, intron 1 of 9)	intron (NM_021605, intron 1 of 9)	5066.0	NM_021605	59125.0	Mm.143817	NM_021605	ENSMUSG00000026393	Nek7	2810460C19Rik|AU020186	NIMA (never in mitosis gene a)-related expressed kinase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-48047761-4	chr6	48047662	48047862	+	682.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347139)	promoter-TSS (NM_001347139)	32.0	NM_001347139	72306.0	Mm.381553	NM_001081382	ENSMUSG00000071477	Zfp777	2500002G23Rik	zinc finger protein 777	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-78815318-2	chr18	78815218	78815418	+	682.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_053099, intron 4 of 5)	L3|LINE|CR1	-218368.0	NM_207651	27411.0	Mm.44158	NM_030683	ENSMUSG00000024552	Slc14a2	UT-A1|UT-A3	solute carrier family 14 (urea transporter), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-9071630-4	chr19	9071556	9071756	+	970.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104460, intron 6 of 6)	intron (NR_104460, intron 6 of 6)	16300.0	NM_011681	22287.0	Mm.2258	NM_011681	ENSMUSG00000024653	Scgb1a1	CC10|CC16|CCSP|PCB-BP|UG|UGB|Utg	secretoglobin, family 1A, member 1 (uteroglobin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-136725582-5	chr3	136725434	136725634	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008913, intron 1 of 13)	intron (NM_008913, intron 1 of 13)	55468.0	NM_001293622	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64414635-2	chr5	64414497	64414697	+	605.0	f0_balb.idr|f1_c57bl6.idr	Intergenic	L1M5|LINE|L1	53345.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	1.19516146721452	0.78650128229298	1.3072373485138	0.76186399073233	1.75160004724492	1.73939887827573	1.31882187638873	0.763763874855733	1.67139518840087	0.243374566808979	0.740751247850617
Merged-chr10-121580731-2	chr10	121580631	121580831	+	708.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_019786, intron 2 of 20)	intron (NM_019786, intron 2 of 20)	6063.0	NM_019786	56480.0	Mm.34580	NM_019786	ENSMUSG00000020115	Tbk1	1200008B05Rik|AI462036|AW048562	TANK-binding kinase 1	protein-coding	-0.241686623519995	-0.227821989330175	-0.232368427596421	0.292676536618523	-0.240822246292407	-0.0309779191136286	-0.231366037172081	0.396008901994052	0.664794048597558	0.784180438881133	1
Merged-chr13-14068220-4	chr13	14068121	14068321	+	892.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194262, intron 2 of 23)	T-rich|Low_complexity|Low_complexity	4437.0	NM_198122	94246.0	Mm.439784	NM_194262	ENSMUSG00000039219	Arid4b	BCAA|BRCAA1|RBBP1L1|Rbp1l1|SAP180	AT rich interactive domain 4B (RBP1-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-116436373-4	chr12	116436298	116436498	+	981.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133762, intron 17 of 28)	Lx8|LINE|L1	30996.0	NM_133762	76044.0	Mm.491196	NM_133762	ENSMUSG00000042029	Ncapg2	5830426I05Rik|Luzp5|Mtb|mCAP-G2	non-SMC condensin II complex, subunit G2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-69420953-2	chr12	69420853	69421053	+	813.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	48803.0	NM_007481	11845.0	Mm.27308	NM_007481	ENSMUSG00000044147	Arf6	AI788669|AW496366	ADP-ribosylation factor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78587913-2	chr15	78587806	78588006	+	891.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6317.0	NR_155437	102640742.0	Mm.253544	NR_155437	ENSMUSG00000116097	Gm36738	-	predicted gene, 36738	ncRNA	0.665282900072181	1.04138246233714	0.989369290733472	0.39841681797435	0.541895732731589	0.413921909020065	1.0009574961681	0.39946678753606	-1.02940010508632	0.551273671275994	1
Merged-chr17-23965818-2	chr17	23965719	23965919	+	763.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9411.0	NM_013921	30943.0	Mm.142568	NM_013921	ENSMUSG00000024124	Prss30	2010015P21Rik|Disp|Disp1|Tmprss8	protease, serine 30	protein-coding	2.01137086338022	2.07910733121542	3.08469963023086	2.57963748855673	3.01933880798213	3.67172385228554	3.72554610329939	1.72113419138752	1.27474926202789	0.105692162469363	0.507102598763296
Merged-chr9-3004215-1	chr9	3004115	3004315	+	933.6666869999999	f1_c57bl6.idr	Intergenic	GSAT_MM|Satellite|Satellite	34528.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-5559553-4	chr5	5559445	5559645	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357031)	promoter-TSS (NM_001357031)	-4.0	NM_001357031	207704.0	Mm.323984	NM_153116	ENSMUSG00000040464	Gtpbp10	4930545J22Rik|BC034507	GTP-binding protein 10 (putative)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-119862201-4	chr8	119862127	119862327	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146219)	promoter-TSS (NM_146219)	-78.0	NM_146219	234796.0	Mm.86446	NM_146219	ENSMUSG00000031828	Klhl36	-	kelch-like 36	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101302311-4	chr11	101302218	101302418	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019584)	promoter-TSS (NM_019584)	-32.0	NM_001359821	56208.0	Mm.178947	NM_019584	ENSMUSG00000035086	Becn1	Atg6	beclin 1, autophagy related	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-97859198-3	chr13	97859067	97859267	+	864.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	108055.0	NR_152263	111365222.0	Mm.440079	NR_152263		Eyelinc18	-	uncharacterized EyeLinc18	ncRNA	3.1855031362869	2.77423866193802	2.56459579069857	3.35092248295938	2.1286968405889	2.39603109061084	2.45751623283231	1.42260680271185	-1.73989236025458	0.029186516400334	0.232729169542229
Merged-chr13-9599531-4	chr13	9599426	9599626	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081426, intron 17 of 36)	ORR1E|LTR|ERVL-MaLR	164284.0	NM_001347471	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-85388921-1	chr10	85388821	85389021	+	616.0	f0_c57.idr	intron (NM_028709, intron 1 of 16)	intron (NM_028709, intron 1 of 16)	2107.0	NM_028709	74007.0	Mm.36544	NM_028709	ENSMUSG00000020042	Btbd11	6330404E16Rik	BTB (POZ) domain containing 11	protein-coding	0.935582369493175	1.70676807443582	1.71928678106426	0.993847148519678	0.78875331015497	0.645906870115817	0.854710312978711	0.620439056848894	-3.33576288359432	0.0309923619310486	0.242946269076526
Merged-chr2-31165727-2	chr2	31165627	31165827	+	807.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178760, intron 1 of 17)	intron (NM_178760, intron 1 of 17)	13411.0	NM_178760	277463.0	Mm.236074	NM_178760	ENSMUSG00000000194	Gpr107	9930033D15Rik|AI790205|C530034M11|mKIAA1624	G protein-coupled receptor 107	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32966223-3	chr2	32966120	32966320	+	938.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB7|LINE|L1	2919.0	NR_002898	104367.0	Mm.250030	NR_002898	ENSMUSG00000065124	Snora65	MBII-351|Rnu65	small nucleolar RNA, H/ACA box 65	snoRNA	2.20846784242522	1.76435601768095	1.70102010883274	1.7661911498355	0.96203364407336	1.6334101459032	1.00318235859882	1.37712719624402	-2.12791270324029	0.0778623022591502	0.424632682956947
Merged-chr11-83657586-3	chr11	83657486	83657686	+	886.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4998.0	NM_013652	20303.0	Mm.244263	NM_013652	ENSMUSG00000018930	Ccl4	AT744.1|Act-2|MIP-1B|Mip1b|Scya4	chemokine (C-C motif) ligand 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-154406794-4	chr2	154406666	154406866	+	936.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009228, intron 1 of 7)	MIR3|SINE|MIR	1318.0	NM_009228	20648.0	Mm.1541	NM_009228	ENSMUSG00000027488	Snta1	AW228934|Snt1	syntrophin, acidic 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-120521235-2	chr5	120521135	120521335	+	739.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177595, intron 7 of 13)	intron (NM_001177595, intron 7 of 13)	10043.0	NM_001177594	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32835907-3	chr2	32835806	32836006	+	849.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113569, intron 1 of 19)	intron (NM_001113569, intron 1 of 19)	11326.0	NM_009295	20910.0	Mm.278865	NM_009295	ENSMUSG00000026797	Stxbp1	AI317162|AI326233|MMS10-G|Ms10g|Munc-18a|Munc18-1|N-sec1|Rb-sec1|Sxtbp1|Unc18-1|Unc18h|nsec1	syntaxin binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-111509491-2	chr13	111509391	111509591	+	874.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA5|LINE|L1	-19364.0	NM_001361924	73274.0	Mm.57286	NM_028487	ENSMUSG00000032745	Gpbp1	1700034P14Rik|AU019836|D230035M11Rik|Gpbp|mGPBP	GC-rich promoter binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-72438757-1	chr4	72438657	72438857	+	715.0	f0_balb.idr	Intergenic	RMER19B|LTR|ERVK	237513.0	NR_027923	68285.0	Mm.37541	NR_027923		C630043F03Rik	AI851307	RIKEN cDNA C630043F03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-13415673-4	chr2	13415593	13415793	+	851.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081084, intron 27 of 66)	intron (NM_001081084, intron 27 of 66)	76183.0	NM_001081084	65969.0	Mm.313915	NM_001081084	ENSMUSG00000026726	Cubn	AA408369|AL022750|D2Wsu88e	cubilin (intrinsic factor-cobalamin receptor)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-136566499-3	chr5	136566367	136566567	+	752.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291233)	promoter-TSS (NM_001291233)	-486.0	NM_001291233	13047.0	Mm.320317	NM_009986	ENSMUSG00000029705	Cux1	CDP|Cutl1|Cux|Cux-1	cut-like homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-55299545-4	chr12	55299446	55299646	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021529, intron 2 of 13)	intron (NM_021529, intron 2 of 13)	-3091.0	NM_025373	66132.0	Mm.383213	NM_025373	ENSMUSG00000021023	1110008L16Rik	Kiaa0391|Mrpp3|mKIAA0391	RIKEN cDNA 1110008L16 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95985440-4	chr3	95985350	95985550	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045872)	promoter-TSS (NR_045872)	-60.0	NR_045872	668224.0	Mm.357766	NR_045872		Gm9054	EG668224	predicted gene 9054	ncRNA	5.62840274068996	5.35449991279697	4.80038474964805	5.25818232945537	5.50671172846215	5.77708128612764	4.83550807601727	5.25147143496758	0.0996988919547092	0.752075645660589	0.998431161219273
Merged-chr3-116008245-4	chr3	116008148	116008348	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023214)	promoter-TSS (NM_023214)	-49.0	NM_001163514	58193.0	Mm.41739	NM_021388	ENSMUSG00000027963	Extl2	3000001D04Rik|AW146439	exostoses (multiple)-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-20827256-2	chr16	20827156	20827356	+	551.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C|LTR|ERVK	-92745.0	NM_009379	21832.0	Mm.3943	NM_009379	ENSMUSG00000022847	Thpo	Mgdf|Ml|Mpllg|Tpo	thrombopoietin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-56636397-5	chr9	56636292	56636492	+	842.2000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311076)	promoter-TSS (NM_001311076)	-744.0	NM_001311076	235402.0	Mm.246605	NM_181074	ENSMUSG00000049556	Lingo1	4930471K13Rik|AV148400|LERN1|LINGO-1|Lrrn6a|UNQ201	leucine rich repeat and Ig domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-68206913-4	chr8	68206806	68207006	+	907.3250119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69622.0	NM_028182	72281.0	Mm.40974	NM_028182	ENSMUSG00000053886	Sh2d4a	2210402M20Rik|SH2A	SH2 domain containing 4A	protein-coding	4.71469019729995	4.30495117114994	4.7278105371807	4.38330849900104	3.74281837356546	3.44592026151445	4.8415598106017	4.92366273332326	-0.195810097387244	0.660994075549231	0.990861719256097
Merged-chr15-82994874-2	chr15	82994774	82994974	+	728.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28264.0	NM_028728	74039.0	Mm.32584	NM_028728	ENSMUSG00000058099	Nfam1	4921501M20Rik|Cnaip	Nfat activating molecule with ITAM motif 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-33115011-4	chr15	33114900	33115100	+	740.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176073, intron 1 of 7)	intron (NM_176073, intron 1 of 7)	31871.0	NM_176073	54381.0	Mm.158251	NM_018755	ENSMUSG00000039007	Cpq	1190003P12Rik|2610034C17Rik|Hls2|Lal-1|Pgcp	carboxypeptidase Q	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-4922823-4	chr17	4922711	4922911	+	983.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72263.0	NM_001085355	239985.0	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-70709500-3	chr6	70709446	70709646	+	940.322205	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	82629.0	NM_009075	19895.0	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-8737475-4	chr15	8737374	8737574	+	896.43335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-26667.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-109365510-4	chr11	109365418	109365618	+	704.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359034, intron 1 of 2)	intron (NM_001359034, intron 1 of 2)	-1864.0	NR_038097	100036768.0	Mm.467767	NR_038097	ENSMUSG00000056687	Gm11696	-	predicted gene 11696	ncRNA	1.3825774537672	0.782466192828009	0.769841316297678	0.759969910077979	1.56831483020756	1.47821429434166	1.42101337638758	1.25030162446593	2.06255093533762	0.154688652402348	0.610069793551649
Merged-chr8-125183607-3	chr8	125183474	125183674	+	809.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_174854, intron 9 of 12)	intron (NM_174854, intron 9 of 12)	129379.0	NM_174854	244667.0	Mm.233504	NM_170596	ENSMUSG00000043051	Disc1	-	disrupted in schizophrenia 1	protein-coding	-1.08076786570156	-1.19385038044597	-1.20397119729607	-1.05678393513184	-1.07718846334267	-1.19165715721456	-1.04243341301208	-1.21079661785674	0.0427205911696809	0.988383712086293	1
Merged-chr11-70221087-5	chr11	70220931	70221131	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172371)	promoter-TSS (NM_172371)	-37.0	NM_172371	69309.0	Mm.93266	NM_172371	ENSMUSG00000044367	Slc16a13	1700007D07Rik	solute carrier family 16 (monocarboxylic acid transporters), member 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-8372902-4	chr17	8372815	8373015	+	724.966675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161832, intron 1 of 10)	intron (NM_001161832, intron 1 of 10)	519.0	NM_001161832	21331.0	Mm.482744	NM_013682		T2	brachyury2	brachyury 2	protein-coding	0.628445379987439	0.123730981766639	0.118770687495579	0.114960280334382	0.55588383726172	0.307090118858347	0.28663413215289	0.400358958202504	0.868275709361224	0.656286138029976	1
Merged-chr10-128374646-3	chr10	128374574	128374774	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2450.0	NM_172790	237615.0	Mm.440177	NM_172790	ENSMUSG00000014498	Ankrd52	6430544C07|G431002C21Rik	ankyrin repeat domain 52	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65671706-3	chr9	65671610	65671810	+	858.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4838.0	NM_010952	18247.0	Mm.116749	NM_010952	ENSMUSG00000040652	Oaz2	AZ-2|AZ2|Oaz2-ps|Sez15	ornithine decarboxylase antizyme 2	protein-coding	1.82691380742511	1.78047078237775	1.13648423365235	1.51918199432246	1.60402798659849	2.18975546823788	1.73441828867418	2.46183690267004	1.31169484087735	0.213094711404573	0.702779094951089
Merged-chr9-66946379-2	chr9	66946282	66946482	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_001361106)	promoter-TSS (NM_001361106)	-31.0	NM_001361106	67941.0	Mm.30120	NM_026467	ENSMUSG00000036781	Rps27l	1810034D23Rik	ribosomal protein S27-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-13537886-3	chr2	13537778	13537978	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010067, intron 1 of 10)	intron (NM_010067, intron 1 of 10)	6786.0	NM_010067	13434.0	Mm.6979	NM_010067	ENSMUSG00000026723	Trdmt1	Dnmt2|Rnmt2	tRNA aspartic acid methyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53794395-3	chr4	53794390	53794590	+	886.694458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14785.0	NM_009317	21350.0	Mm.56955	NM_009317	ENSMUSG00000028417	Tal2	bHLHa19	T cell acute lymphocytic leukemia 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-46160282-4	chr17	46160204	46160404	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019581)	promoter-TSS (NM_019581)	-728.0	NM_019581	56055.0	Mm.22147	NM_019581	ENSMUSG00000023952	Gtpbp2	nmf205	GTP binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-122053710-1	chr10	122053610	122053810	+	591.0	f1_balb.idr	Intergenic	L1_Mus3|LINE|L1	-6395.0	NM_001081037	117600.0	Mm.288698	NM_001081037	ENSMUSG00000020121	Srgap1	4930572H05Rik|Arhgap13	SLIT-ROBO Rho GTPase activating protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-138210818-4	chr1	138210724	138210924	+	762.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35519.0	NM_001268286	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-5834194-2	chr8	5834094	5834294	+	830.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-728907.0	NM_011388	20494.0	Mm.3500	NM_011388	ENSMUSG00000023073	Slc10a2	9130221J18Rik|AI605518|ASBT|IBAT|ISBT	solute carrier family 10, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-84774701-2	chr12	84774601	84774801	+	672.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_028863, exon 4 of 4)	exon (NM_028863, exon 4 of 4)	1431.0	NM_028863	74316.0	Mm.25719	NM_028863	ENSMUSG00000021241	Isca2	0710001C05Rik|5730594E03Rik|Hbld1	iron-sulfur cluster assembly 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-55322537-2	chr13	55322437	55322637	+	772.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009000)	promoter-TSS (NM_009000)	482.0	NM_025596	66494.0	Mm.439805	NM_025596	ENSMUSG00000021486	Prelid1	2610524G07Rik|Preli	PRELI domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-90217072-2	chr9	90216972	90217172	+	676.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 9 of 12)	intron (NM_194334, intron 9 of 12)	53697.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-127379444-2	chr2	127379344	127379544	+	842.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16158.0	NM_009633	11552.0	Mm.347390	NM_009633	ENSMUSG00000058620	Adra2b	Adra-2b|[a]2B|a2b-AR|alpha2-C2|alpha2B	adrenergic receptor, alpha 2b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3857319-2	chr12	3857219	3857419	+	669.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_007872, intron 3 of 22)	intron (NM_007872, intron 3 of 22)	4925.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56250275-2	chr17	56250175	56250375	+	549.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6518.0	NM_010192	14154.0	Mm.290813	NM_010192	ENSMUSG00000043683	Fem1a	AW611390|Fem1aa	feminization 1 homolog a (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-23862944-2	chr19	23862828	23863028	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177034, intron 1 of 12)	MLT1E2|LTR|ERVL-MaLR	104052.0	NM_177034	319924.0	Mm.22879	NM_177034	ENSMUSG00000024897	Apba1	6430513E09Rik|Lin-10|Mint|Mint1|Urop11|X11|X11alpha	amyloid beta (A4) precursor protein binding, family A, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-102437772-4	chr11	102437654	102437854	+	952.4750369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008175)	TTS (NM_008175)	7432.0	NM_008175	14824.0	Mm.1568	NM_008175	ENSMUSG00000034708	Grn	Pgrn|epithelin	granulin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-99264680-5	chr10	99264579	99264779	+	865.0166630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026268, exon 2 of 3)	exon (NM_026268, exon 2 of 3)	1448.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-169958419-4	chr2	169958317	169958517	+	930.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	4770.0	NR_131974	446211.0	Mm.266854	NR_131974	ENSMUSG00000103935	AY702102	STDP1	cDNA sequence AY702102	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-33754206-2	chr2	33754106	33754306	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175184, intron 8 of 9)	intron (NM_175184, intron 8 of 9)	-51610.0	NR_045729	320482.0	Mm.442057	NR_045729	ENSMUSG00000086484	Nron	A630071L07Rik|Gm24353	non-protein coding RNA, repressor of NFAT	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-38486802-2	chr2	38486702	38486902	+	695.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24895.0	NM_021606	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-47058236-2	chr7	47058136	47058336	+	676.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7596.0	NM_026436	67893.0	Mm.27338	NM_026436	ENSMUSG00000010307	Tmem86a	1810054O13Rik|AI414959|AW742698	transmembrane protein 86A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-38932006-3	chr2	38931925	38932125	+	719.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172854)	promoter-TSS (NM_172854)	45.0	NM_172854	241327.0	Mm.103491	NM_172854	ENSMUSG00000046618	Olfml2a	4932431K08Rik|mFLJ00237	olfactomedin-like 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-107340946-3	chr11	107340860	107341060	+	780.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 1 of 9)	Lx8|LINE|L1	129760.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-17728826-4	chr18	17728730	17728930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-147840.0	NR_045374	75162.0	Mm.60874	NR_045374		4930545E07Rik	-	RIKEN cDNA 4930545E07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-162968554-2	chr2	162968454	162968654	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081338, intron 20 of 22)	intron (NM_001081338, intron 20 of 22)	-18927.0	NM_001291154	27219.0	Mm.26462	NM_013731	ENSMUSG00000017868	Sgk2	AI098171|AW146006|Sgkl	serum/glucocorticoid regulated kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-158170962-2	chr2	158170862	158171062	+	850.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21046.0	NR_036606	73399.0	Mm.416861	NR_036606	ENSMUSG00000078957	1700060C20Rik	-	RIKEN cDNA 1700060C20 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-173426536-4	chr1	173426443	173426643	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013779, intron 1 of 8)	intron (NM_001013779, intron 1 of 8)	5939.0	NM_001013779	383619.0	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	3.40064157780758	3.10422394140909	3.67085727377666	3.2897152330372	3.22618573195119	2.71807714480745	3.0234147379781	3.52614303173927	-0.362205786113744	0.534975471990066	0.95286627222167
Merged-chr7-35235490-4	chr7	35235397	35235597	+	794.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20152.0	NM_001024707	435965.0	Mm.333783	NM_001024707	ENSMUSG00000001802	Lrp3	-	low density lipoprotein receptor-related protein 3	protein-coding	-0.574049040224471	-0.563755355083771	-0.567140583789313	-0.158836676945873	-0.4326755647566	-0.0773073579570004	-0.566395010402631	-0.5692896359391	0.622095998119609	0.815766167734643	1
Merged-chr9-56100178-4	chr9	56100082	56100282	+	863.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011193, intron 1 of 14)	ORR1F|LTR|ERVL-MaLR	10206.0	NM_011193	19200.0	Mm.2534	NM_011193	ENSMUSG00000032322	Pstpip1	CD2BP1|def-2	proline-serine-threonine phosphatase-interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-145806836-4	chr6	145806748	145806948	+	864.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1535.0	NM_027760	71323.0	Mm.158669	NM_027760	ENSMUSG00000030259	Rassf8	5133400D11Rik|AA815821|AW123240|Hoj1|mHoj-1	Ras association (RalGDS/AF-6) domain family (N-terminal) member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119428958-3	chr11	119428859	119429059	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38487.0	NR_035453	100316690.0		NR_035453	ENSMUSG00000088015	Mir1932	mir-1932|mmu-mir-1932	microRNA 1932	ncRNA	3.30106038005861	2.52779460967566	3.32974754698072	3.68060920948286	3.74835055976622	2.34034869793046	4.18783883485784	3.49571160280094	0.50299433882788	0.424718585027657	0.901293602726532
Merged-chr16-65404612-3	chr16	65404533	65404733	+	701.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-115996.0	NM_008849	18736.0	Mm.355440	NM_008849	ENSMUSG00000004842	Pou1f1	GHF-1|Hmp1|Pit-1|Pit1|Pit1-rs1|dw|dwarf	POU domain, class 1, transcription factor 1	protein-coding	1.46042687100409	1.88800865034489	1.81611005768133	1.75868738545386	1.06539337811526	0.932352095581956	0.915828055464343	1.42547622193872	-2.52073728258314	0.0502461744006645	0.326808963024488
Merged-chr7-45661002-4	chr7	45660901	45661101	+	971.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271993, intron 1 of 2)	intron (NM_001271993, intron 1 of 2)	5393.0	NM_018876	14344.0	Mm.290046	NM_018876	ENSMUSG00000055978	Fut2	-	fucosyltransferase 2	protein-coding	-1.84297643846673	-1.8130099360596	-1.82207205372894	-1.6869274651563	-1.84087284540582	-1.81104613735712	-1.82002058892457	-1.6855950118199	0.037684011990387	0.991491645451152	1
Merged-chr13-59000270-2	chr13	59000170	59000370	+	834.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025074, intron 13 of 17)	intron (NM_001025074, intron 13 of 17)	192573.0	NM_001025074	18212.0	Mm.130054	NM_008745	ENSMUSG00000055254	Ntrk2	GP145-TrkB/GP95-TrkB|Tkrb|trk-B|trkB	neurotrophic tyrosine kinase, receptor, type 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-58034178-5	chr15	58034058	58034258	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029418, exon 1 of 6)	exon (NM_029418, exon 1 of 6)	136.0	NM_029418	75758.0	Mm.455792	NM_029418	ENSMUSG00000101892	9130401M01Rik	AI849328	RIKEN cDNA 9130401M01 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-46735728-1	chr14	46735628	46735828	+	549.0	f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-24813.0	NM_001360041	72391.0	Mm.272394	NM_028222	ENSMUSG00000037628	Cdkn3	2410006H10Rik|KAP	cyclin-dependent kinase inhibitor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-130262412-2	chr5	130262312	130262512	+	714.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_153350, intron 2 of 15)	intron (NR_153350, intron 2 of 15)	5375.0	NM_001015876	100929.0	Mm.271296	NM_178897	ENSMUSG00000056310	Tyw1	AW125391|Rsafd1	tRNA-yW synthesizing protein 1 homolog (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-49264068-2	chr13	49263968	49264168	+	752.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_015759, intron 17 of 17)	intron (NM_015759, intron 17 of 17)	-15362.0	NM_028340	66329.0	Mm.34308	NM_025491	ENSMUSG00000021384	Susd3	1700017I11Rik|2810440J20Rik	sushi domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-74523768-4	chr11	74523673	74523873	+	880.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001015046, intron 2 of 24)	intron (NM_001015046, intron 2 of 24)	66385.0	NM_001015046	380711.0	Mm.425690	NM_001015046	ENSMUSG00000038807	Rap1gap2	AU067654|Garnl4|Gm1561|mKIAA1039	RAP1 GTPase activating protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-26950046-3	chr8	26949964	26950164	+	784.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-27272.0	NM_001101502	353310.0	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-54203862-4	chr12	54203768	54203968	+	855.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028133)	promoter-TSS (NM_028133)	6.0	NM_028133	112407.0	Mm.133037	NM_028133	ENSMUSG00000035105	Egln3	2610021G09Rik|AI505553|AI648162|Hif-p4h-3|Phd3|SM-20	egl-9 family hypoxia-inducible factor 3	protein-coding	3.03974267033521	2.69226218800344	2.34006713085084	3.31495633335122	2.61928764095793	1.85693410606522	2.35824089234815	2.65120370054661	-0.977729071605868	0.197860112924827	0.680337877781452
Merged-chr3-79128667-2	chr3	79128567	79128767	+	793.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001099624, intron 1 of 23)	intron (NM_001099624, intron 1 of 23)	16220.0	NM_001310536	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-130491801-4	chr2	130491679	130491879	+	911.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355161, intron 1 of 21)	intron (NM_001355161, intron 1 of 21)	41501.0	NM_001355161	19262.0	Mm.224246	NM_008980	ENSMUSG00000027303	Ptpra	Ptpa|Ptpalpha|Rptpalpha|Rptra|Rptralpha	protein tyrosine phosphatase, receptor type, A	protein-coding	3.31360864755244	3.89404395877917	2.03804847361296	2.5804656541347	4.30816527015065	4.3087866996315	4.6295410459364	3.99711493991735	1.70255332883374	0.00232185444111328	0.0373092985506389
Merged-chr16-3744868-4	chr16	3744759	3744959	+	937.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_148924, intron 1 of 5)	intron (NM_148924, intron 1 of 5)	760.0	NM_148924	74120.0	Mm.29081	NM_148924	ENSMUSG00000022529	Zfp263	1200014J04Rik|AI326880|AU020888|NT2|mFPM315	zinc finger protein 263	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-142561722-4	chr3	142561620	142561820	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289492, intron 2 of 11)	intron (NM_001289492, intron 2 of 11)	1364.0	NM_001289493	55932.0	Mm.439718	NM_018734	ENSMUSG00000028268	Gbp3	AW228655|GBP-3|GBP-4|Gbp4	guanylate binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-61564221-3	chr11	61564128	61564328	+	972.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252189, intron 1 of 8)	intron (NM_001252189, intron 1 of 8)	15459.0	NM_010148	13855.0	Mm.139695	NM_010148	ENSMUSG00000001036	Epn2	9530051D10Rik|AA536924|Ibp2	epsin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-22125803-4	chr9	22125708	22125908	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_007388)	TTS (NM_007388)	4790.0	NM_007388	11433.0	Mm.46354	NM_007388	ENSMUSG00000001348	Acp5	TRACP|TRAP	acid phosphatase 5, tartrate resistant	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-160085484-2	chr2	160085384	160085584	+	820.333374	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	68831.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	3.64310681483525	2.37431726079054	4.26833743006959	3.48408424974896	4.41778388611154	2.39483116606851	4.25012161167697	3.72551231226303	0.419051887812165	0.507438033584857	0.943374049681311
Merged-chr8-122564704-6	chr8	122564589	122564789	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-3326.0	NM_026014	67177.0	Mm.21873	NM_026014	ENSMUSG00000006585	Cdt1	2610318F11Rik|AW545653|C76791|Ris2	chromatin licensing and DNA replication factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16012786-2	chr7	16012689	16012889	+	850.625	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13294.0	NM_001081418	243842.0	Mm.440249	NM_001081418	ENSMUSG00000070808	Bicra	Gltscr1	BRD4 interacting chromatin remodeling complex associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141076829-4	chr4	141076755	141076955	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149724, intron 1 of 8)	intron (NR_149724, intron 1 of 8)	1502.0	NR_149724	66147.0	Mm.21187	NM_025383	ENSMUSG00000028923	Necap2	1110005F07Rik|AA409105|C78898|NECAP-2	NECAP endocytosis associated 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85491307-2	chr12	85491207	85491407	+	975.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17417.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65676025-3	chr9	65675930	65676130	+	875.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010952)	promoter-TSS (NM_010952)	-518.0	NM_010952	18247.0	Mm.116749	NM_010952	ENSMUSG00000040652	Oaz2	AZ-2|AZ2|Oaz2-ps|Sez15	ornithine decarboxylase antizyme 2	protein-coding	1.69559445012538	0.817778609892766	0.803417739734859	1.5317023352168	1.71220978747942	1.05263759089004	0.80660879678674	1.54088749257558	0.174885716948684	0.903561063652745	0.998431161219273
Merged-chr10-122097372-4	chr10	122097271	122097471	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153059)	promoter-TSS (NM_153059)	-269.0	NM_153059	216395.0	Mm.236764	NM_153059	ENSMUSG00000034620	Tmem5	6330415D21Rik	transmembrane protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-43423213-4	chr5	43423113	43423313	+	864.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-92356.0	NM_001135172	109323.0	Mm.275553	NM_175425	ENSMUSG00000061535	C1qtnf7	5530401N20Rik|8430425G24Rik|Ctrp7	C1q and tumor necrosis factor related protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-45401920-1	chr13	45401820	45402020	+	585.0	f0_balb.idr	intron (NM_153789, intron 2 of 6)	PB1D9|SINE|Alu	12178.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-36712043-4	chr5	36711916	36712116	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15995.0	NM_001081232	320661.0	Mm.26480	NM_177221	ENSMUSG00000029190	D5Ertd579e	9030221A05Rik|A930018H20Rik|Kiaa0232	DNA segment, Chr 5, ERATO Doi 579, expressed	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-72305911-1	chr8	72305811	72306011	+	872.0	f1_balb.idr	Intergenic	RMER19A|LTR|ERVK	-13151.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	0.846274661904955	0.715470348883379	1.07699326214095	1.40991180660084	1.12438572855676	1.12696915945451	0.705847129589308	1.76220899507336	0.828035765059111	0.56099953771109	0.960350977191929
Merged-chr17-83708465-2	chr17	83708365	83708565	+	826.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001171053, exon 2 of 14)	exon (NM_001171053, exon 2 of 14)	2302.0	NM_001171052	116871.0	Mm.277668	NM_054082	ENSMUSG00000055817	Mta3	1110002J22Rik|mKIAA1266	metastasis associated 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-79995177-2	chr10	79995077	79995277	+	907.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007725, exon 7 of 7)	3' UTR (NM_007725, exon 7 of 7)	-2431.0	NM_001347081	27403.0	Mm.103351	NM_013850	ENSMUSG00000035722	Abca7	ABCX|Abc51	ATP-binding cassette, sub-family A (ABC1), member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-30354945-4	chr6	30354863	30355063	+	993.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36057.0	NM_172735	232679.0	Mm.29780	NM_172735	ENSMUSG00000039130	Zc3hc1	1110054L24Rik|AU018540|AU019789|HSPC216|Nipa	zinc finger, C3HC type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-94601597-2	chr4	94601497	94601697	+	729.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_172695, intron 1 of 13)	B2_Mm2|SINE|B2	1650.0	NM_172695	18786.0	Mm.490101	NM_172695	ENSMUSG00000028577	Plaa	2410007N06|AI536418|AU018445|AW208417|D4Ertd618e|PLA2P|PLAP|Ufd3	phospholipase A2, activating protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80182429-2	chr10	80182329	80182529	+	898.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007909, intron 1 of 3)	(CGTG)n|Simple_repeat|Simple_repeat	2947.0	NM_007909	13637.0	Mm.1478	NM_007909	ENSMUSG00000003070	Efna2	CEK7L|Elf1|Epl6|Eplg6|Lerk6	ephrin A2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-72795688-4	chr11	72795579	72795779	+	962.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001045536)	promoter-TSS (NM_001045536)	160.0	NM_001024926	192986.0	Mm.194755	NM_001024926	ENSMUSG00000057778	Cyb5d2	9330151E16Rik|Gm2	cytochrome b5 domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-120589998-2	chr4	120589887	120590087	+	707.25	f0_c57.idr|f1_c57bl6.idr	intron (NM_001101603, intron 1 of 2)	intron (NM_001101603, intron 1 of 2)	1242.0	NM_001101603	667063.0	Mm.90231	NM_001101603	ENSMUSG00000091297	Gm8439	EG667063|Gm1664	predicted gene 8439	protein-coding	1.0761155638127	0.760071552776905	2.16279001697845	1.94082250636706	0.913401472222357	0.764195696555934	0.745583784821895	1.57049676196185	-1.91001254164741	0.176957902706421	0.646570188136342
Merged-chr12-38735708-3	chr12	38735593	38735793	+	741.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TTTTG)n|Simple_repeat|Simple_repeat	-44389.0	NM_001347379	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	1.77787937266484	3.28595752614196	2.27900079436764	2.47363951132786	1.79285535582715	3.23634773988941	2.68303241120026	2.48680787482575	0.143333375423005	0.863814892871782	0.998431161219273
Merged-chr8-36866912-3	chr8	36866796	36866996	+	829.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001194940, intron 2 of 17)	L3|LINE|CR1	85546.0	NM_001194940	50768.0	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	3.60847762716464	3.73805547337451	3.61482908003497	3.43251051119124	4.39360517822904	3.49132863384508	3.03286525679755	3.93452667497686	0.329328742206653	0.533132344857485	0.952082138848632
Merged-chr19-5567605-4	chr19	5567559	5567759	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033448)	promoter-TSS (NM_001033448)	-365.0	NM_001362046	381201.0	Mm.441906	NM_001033448	ENSMUSG00000049562	Ap5b1	Gm962|beta-5	adaptor-related protein complex 5, beta 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-95806969-4	chr8	95806777	95806977	+	985.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015574)	promoter-TSS (NR_015574)	47.0	NR_015574	319960.0	Mm.386996	NR_015574	ENSMUSG00000074136	4930513N10Rik	-	RIKEN cDNA 4930513N10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-84335656-4	chr10	84335578	84335778	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	104793.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120351135-3	chr11	120351027	120351227	+	854.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_038126)	TTS (NR_038126)	2449.0	NR_038126	66838.0	Mm.375010	NR_038126	ENSMUSG00000043644	0610009L18Rik	-	RIKEN cDNA 0610009L18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-32834192-3	chr18	32834081	32834281	+	964.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045381, intron 1 of 4)	intron (NR_045381, intron 1 of 4)	-3044.0	NM_001110016	225348.0	Mm.38816	NM_144863	ENSMUSG00000038299	Wdr36	5730444A13Rik|Ta-wdrp	WD repeat domain 36	protein-coding	2.08923794608087	1.43721169815884	1.38617169791052	2.21681986205858	3.31047455061467	3.2186185926744	3.33547278406333	3.41901585301519	3.00252550042028	0.000214937935231891	0.00569696321114631
Merged-chr15-80977876-4	chr15	80977814	80978014	+	988.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357669, intron 1 of 20)	CpG	149.0	NM_134091	105835.0	Mm.274943	NM_134091	ENSMUSG00000042303	Sgsm3	1810012I01Rik|AI428557|BB175482|Cip85|R75178|RUSC3|Rutbc3	small G protein signaling modulator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-56653522-2	chr19	56653422	56653622	+	629.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68850.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-24519188-3	chr13	24519086	24519286	+	911.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63003.0	NM_001286100	193385.0	Mm.217319	NM_029679	ENSMUSG00000036006	Ripor2	Fam65b	RHO family interacting cell polarization regulator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-121457104-4	chr2	121457009	121457209	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026318)	promoter-TSS (NM_026318)	21.0	NM_026318	67693.0	Mm.330525	NM_026318	ENSMUSG00000027245	Hypk	2310003F16Rik|HSPC136	huntingtin interacting protein K	protein-coding	2.68554500125863	1.46649323849493	2.31102354116762	1.38595067346701	1.93165543891535	1.47632350043142	1.43181227334376	2.66248093060388	-0.249951611789369	0.811471574982625	0.998431161219273
Merged-chr12-98737528-3	chr12	98737382	98737582	+	731.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146199)	promoter-TSS (NM_001146199)	-77.0	NM_001146199	24000.0	Mm.4420	NM_011877	ENSMUSG00000021009	Ptpn21	PTPD1|PTPRL10	protein tyrosine phosphatase, non-receptor type 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-94327966-4	chr11	94327882	94328082	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146024)	promoter-TSS (NM_146024)	-19.0	NM_027799	71452.0	Mm.141054	NM_027799	ENSMUSG00000020864	Ankrd40	1110011C06Rik|5530600A18Rik|Gcap15	ankyrin repeat domain 40	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-59262939-4	chr3	59262841	59263041	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357008)	promoter-TSS (NM_001357008)	44.0	NM_027571	70839.0	Mm.422675	NM_027571	ENSMUSG00000036353	P2ry12	2900079B22Rik|4921504D23Rik|P2Y12	purinergic receptor P2Y, G-protein coupled 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-135815526-3	chr1	135815416	135815616	+	859.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3082.0	NM_133664	16763.0	Mm.36726	NM_133664	ENSMUSG00000041782	Lad1	LADA|lad-1	ladinin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-108335902-2	chr9	108335802	108336002	+	600.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_016802, intron 5 of 5)	B1_Mur4|SINE|Alu	-3178.0	NM_001329528	14775.0	Mm.1090	NM_008160	ENSMUSG00000063856	Gpx1	AI195024|AL033363|CGPx|GPx-1|GSHPx-1|Gpx	glutathione peroxidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-31201208-4	chr5	31201110	31201310	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177901, intron 1 of 2)	intron (NM_001177901, intron 1 of 2)	832.0	NM_001177901	101023.0	Mm.45033	NM_175311	ENSMUSG00000043059	Zfp513	AW990386|D430028M17Rik|Znf513	zinc finger protein 513	protein-coding	2.24001659148557	3.19702921829048	3.17391668465994	2.82990271785458	2.70883747307141	2.53052841938047	2.44707180810121	3.2476405820551	-0.243853078013108	0.730781094610222	0.998431161219273
Merged-chr11-53822234-2	chr11	53822125	53822325	+	709.583374	f1_balb.idr|f1_c57bl6.idr	intron (NR_033332, intron 2 of 3)	RMER10A|LTR|ERVL	37031.0	NR_033332	622459.0	Mm.479656	NR_033332	ENSMUSG00000081769	Gm12216	602-19-115	predicted gene 12216	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-16538207-4	chr5	16538123	16538323	+	983.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15272.0	NM_001289460	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-39182930-3	chr3	39182830	39183030	+	671.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	295990.0	NM_183221	329628.0	Mm.316210	NM_183221	ENSMUSG00000046743	Fat4	6030410K14Rik|9430004M15	FAT atypical cadherin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-63127379-3	chr14	63127374	63127574	+	847.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007798, intron 1 of 9)	intron (NM_007798, intron 1 of 9)	5012.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-9132762-4	chr15	9132644	9132844	+	951.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013787, intron 2 of 9)	intron (NM_013787, intron 2 of 9)	7710.0	NM_013787	27401.0	Mm.35584	NM_013787	ENSMUSG00000054115	Skp2	4930500A04Rik|FBXL1|FWD1|p45	S-phase kinase-associated protein 2 (p45)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-43856120-2	chr10	43856020	43856220	+	772.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	30213.0	NR_131055	71018.0	Mm.410796	NR_131055	ENSMUSG00000111342	4933404K13Rik	-	RIKEN cDNA 4933404K13 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-31016355-3	chr16	31016249	31016449	+	761.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198626, intron 2 of 3)	intron (NM_198626, intron 2 of 3)	65083.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-84679464-4	chr7	84679373	84679573	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360579)	promoter-TSS (NM_001360579)	-77.0	NM_001360581	65098.0	Mm.209349	NM_022985	ENSMUSG00000030629	Zfand6	3110005P07Rik|Awp1|Za20d3	zinc finger, AN1-type domain 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-115492640-3	chr9	115492543	115492743	+	774.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	110824.0	NR_130329	100316675.0		NR_130329	ENSMUSG00000080409	Mir467h	Mirn467h|mmu-mir-467h	microRNA 467h	ncRNA	1.76453419481061	1.86507558299297	1.65569288656366	2.52398380958392	2.06159205371683	1.08631024143797	1.06351552453233	1.45765689961121	-1.4475508838379	0.208104036335495	0.696920048740214
Merged-chr19-4299758-4	chr19	4299675	4299875	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290818, intron 1 of 20)	intron (NM_001290818, intron 1 of 20)	6447.0	NM_130863	110355.0	Mm.254144	NM_130863	ENSMUSG00000024858	Grk2	Adrbk-1|Adrbk1|Bark-1|beta ARK|betaARK1	G protein-coupled receptor kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-8111756-4	chr14	8111659	8111859	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360314, intron 1 of 19)	intron (NM_001360314, intron 1 of 19)	13548.0	NM_001360315	218699.0	Mm.29515	NM_145458	ENSMUSG00000033885	Pxk	C230080L11Rik|D14Ertd813e|Monaka|Slob	PX domain containing serine/threonine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100609054-4	chr11	100608942	100609142	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019795, intron 1 of 13)	MTD|LTR|ERVL-MaLR	11126.0	NM_019795	56354.0	Mm.402409	NM_019795	ENSMUSG00000014195	Dnajc7	2010003F24Rik|2010004G07Rik|CCRP|Ttc2|mDj11|mTpr2	DnaJ heat shock protein family (Hsp40) member C7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-133090452-2	chr3	133090352	133090552	+	672.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356309, intron 1 of 11)	intron (NM_001356309, intron 1 of 11)	1373.0	NM_026231	67553.0	Mm.304899	NM_026231	ENSMUSG00000028018	Gstcd	4933434L15Rik	glutathione S-transferase, C-terminal domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-110840975-2	chr7	110840875	110841075	+	773.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_025999, intron 1 of 5)	intron (NM_025999, intron 1 of 5)	3406.0	NM_025999	67150.0	Mm.96867	NM_025999	ENSMUSG00000030788	Rnf141	2610110L04Rik|AA792898|AU022812|ZFP36|ZNF230	ring finger protein 141	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-91738563-4	chr12	91738455	91738655	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 3 of 6)	ORR1D2|LTR|ERVL-MaLR	47881.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-42194081-3	chr8	42194007	42194207	+	907.900024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5b|LINE|L1	366840.0	NR_045497	69966.0	Mm.416903	NR_045497	ENSMUSG00000102046	2810404M03Rik	-	RIKEN cDNA 2810404M03 gene	ncRNA	0.887560965614953	0.985810920252498	0.955385491281434	0.930808915253655	2.41580246437834	2.49613416574496	2.09086843975508	2.62260086902079	5.78214559376556	1.13222223758265e-05	0.000515286612289065
Merged-chr11-4596832-4	chr11	4596720	4596920	+	961.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2005.0	NM_028860	74302.0	Mm.425669	NM_028860	ENSMUSG00000034354	Mtmr3	1700092A20Rik|AI255150|AW557713|FYVE-DSP1|ZFYVE10|mKIAA0371	myotubularin related protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-96485686-3	chr15	96485569	96485769	+	727.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24826.0	NM_028148	72193.0	Mm.324474	NM_028148	ENSMUSG00000033228	Scaf11	1110061H03Rik|2610510E10Rik|AI462454|CASP11|SIP1|SRRP129|Sfrs2ip|Srsf2ip|mKIAA3013	SR-related CTD-associated factor 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-95569287-2	chr10	95569187	95569387	+	706.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5141.0	NM_001358996	71207.0	Mm.24397	NM_027722	ENSMUSG00000020029	Nudt4	4933436C10Rik|DIPP-2|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P	nudix (nucleoside diphosphate linked moiety X)-type motif 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-68362590-4	chr15	68362494	68362694	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21305.0	NR_029718	387228.0		NR_029718	ENSMUSG00000065437	Mir30d	Mirn30d|mir-30d|mmu-mir-30d	microRNA 30d	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26537762-4	chr17	26537650	26537850	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23762.0	NM_026170	67458.0	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	2.99049130901647	3.35693615916374	3.84094453487208	2.7007910307109	3.40434434930925	3.38135094626206	3.677507992159	3.42546016451647	0.295397839632645	0.607309137223605	0.974576632476413
Merged-chr11-104367953-4	chr11	104367842	104368042	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359634, intron 5 of 14)	B1_Mm|SINE|Alu	74349.0	NM_001081045	76719.0	Mm.136418	NM_001081045	ENSMUSG00000018412	Kansl1	1700081L11Rik|9430041J06Rik|mKIAA1267	KAT8 regulatory NSL complex subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120698169-2	chr11	120698069	120698269	+	696.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026877, intron 7 of 15)	intron (NM_026877, intron 7 of 15)	15598.0	NM_016665	20892.0	Mm.259716	NM_016665	ENSMUSG00000025144	Cenpx	Stra13	centromere protein X	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131911449-1	chr1	131911349	131911549	+	1000.0	f0_c57.idr	intron (NM_001145804, intron 1 of 6)	intron (NM_001145804, intron 1 of 6)	991.0	NM_175294	98415.0	Mm.246869	NM_175294	ENSMUSG00000026434	Nucks1	2700010L10Rik|8430423A01Rik|AI647518|C78391|Nucks	nuclear casein kinase and cyclin-dependent kinase substrate 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94352499-2	chr10	94352399	94352599	+	676.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 1 of 4)	ORR1B1|LTR|ERVL-MaLR	40550.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135744272-4	chr5	135744171	135744371	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172541)	promoter-TSS (NM_172541)	-99.0	NM_172541	215210.0	Mm.11688	NM_172541	ENSMUSG00000039886	Tmem120a	2010310D06Rik|Tmpit	transmembrane protein 120A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-80406804-2	chr16	80406704	80406904	+	629.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER20B|LTR|ERVK	407428.0	NM_030146	78654.0		NM_030146		1700066C05Rik	-	RIKEN cDNA 1700066C05 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-69976362-1	chr3	69976262	69976462	+	696.25	f0_c57.idr	Intergenic	L1MEc|LINE|L1	-31251.0	NM_001018031	229389.0	Mm.331071	NM_001018031	ENSMUSG00000027788	Otol1	Gm414	otolin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-26426484-3	chr12	26426369	26426569	+	726.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11207.0	NM_080563	108089.0	Mm.214932	NM_080563	ENSMUSG00000020642	Rnf144a	Rnf144|UIP4|Ubce7ip4	ring finger protein 144A	protein-coding	1.83037980260432	1.63105326834078	1.57118834791817	1.52247455180121	3.01928697816644	3.62675215307437	2.34796033899662	3.04247303163023	3.21547478755844	0.000317003876630019	0.00765632637265404
Merged-chr5-34513022-2	chr5	34512922	34513122	+	768.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_139064, intron 1 of 5)	intron (NM_139064, intron 1 of 5)	957.0	NM_139064	231130.0	Mm.28615	NM_139064	ENSMUSG00000059866	Tnip2	1810020H16Rik|ABIN-2|AI428870	TNFAIP3 interacting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3563349-2	chr19	3563249	3563449	+	663.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360430, intron 1 of 22)	intron (NM_001360430, intron 1 of 22)	12400.0	NM_001360430	52036.0	Mm.284686	NM_028999	ENSMUSG00000024908	Ppp6r3	4930528G08Rik|9130026N02Rik|D19Bwg1430e|D19Ertd703e|Pp6r3|Ppcs3|Pptcs3|Sapl|Saps3|mKIAA1558	protein phosphatase 6, regulatory subunit 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-10229991-2	chr14	10229891	10230091	+	869.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360141, intron 5 of 9)	intron (NM_001360141, intron 5 of 9)	223467.0	NM_001308286	14198.0	Mm.397619	NM_010210	ENSMUSG00000060579	Fhit	AW045638|Fra14A2	fragile histidine triad gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116131135-4	chr11	116131041	116131241	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178802)	promoter-TSS (NM_178802)	-13.0	NM_178802	338364.0	Mm.439976	NM_178802	ENSMUSG00000054517	Trim65	4732463G12Rik	tripartite motif-containing 65	protein-coding	5.86802966702318	5.45113298585696	5.41845121725765	6.19611631218878	5.98781370345697	6.17251190419002	5.83226953001128	5.70729925833835	0.172257434283546	0.511764486021679	0.94512318675548
Merged-chr2-30959844-2	chr2	30959744	30959944	+	568.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_133673)	TTS (NM_133673)	6843.0	NM_133673	30934.0	Mm.249164	NM_133673	ENSMUSG00000026848	Tor1b	2610016F05Rik|DQ1|torsinB	torsin family 1, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-113780650-2	chr5	113780550	113780750	+	727.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CACAG)n|Simple_repeat|Simple_repeat	7838.0	NM_025526	66383.0	Mm.29497	NM_025526	ENSMUSG00000025825	Iscu	2310020H20Rik|AA407971|Nifu|Nifun	iron-sulfur cluster assembly enzyme	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-67934225-4	chr14	67934126	67934326	+	850.229126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177780)	promoter-TSS (NM_177780)	-654.0	NM_177780	68813.0	Mm.258155	NM_177780	ENSMUSG00000044447	Dock5	1110060D06Rik|AI666732|AI956923|BC016533|E130320D18|lr2|rlc	dedicator of cytokinesis 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-20732693-2	chr14	20732593	20732793	+	916.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_010811, intron 2 of 14)	intron (NM_010811, intron 2 of 14)	1869.0	NM_010811	17423.0	Mm.4084	NM_010811	ENSMUSG00000039308	Ndst2	Mndns|NDST-2	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-102396525-2	chr7	102396425	102396625	+	809.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009287, intron 3 of 11)	RSINE1|SINE|B4	-45170.0	NM_009103	20133.0	Mm.197486	NM_009103	ENSMUSG00000030978	Rrm1	RnrM1	ribonucleotide reductase M1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-126978588-4	chr10	126978500	126978700	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113470)	promoter-TSS (NM_001113470)	-117.0	NM_001113470	52468.0	Mm.29490	NM_146012	ENSMUSG00000078429	Ctdsp2	AI586070|D10Ertd73e|OS-4|OS4|SCP2	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166804682-2	chr2	166804582	166804782	+	755.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001085495)	promoter-TSS (NM_001085495)	-899.0	NM_001085495	99371.0	Mm.297192	NM_001085495	ENSMUSG00000074582	Arfgef2	AI463430|AW493672|BIG2|E230011G24Rik	ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70093160-2	chr14	70093060	70093260	+	913.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6933.0	NM_021328	57784.0	Mm.24186	NM_021328	ENSMUSG00000022089	Bin3	1700015F07Rik	bridging integrator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-19460849-3	chr3	19460744	19460944	+	872.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47751.0	NM_001163536	66326.0	Mm.45615	NM_025489	ENSMUSG00000027606	Dnajc5b	1700008A05Rik	DnaJ heat shock protein family (Hsp40) member C5 beta	protein-coding	1.78819927992747	1.23626409638189	1.93503103728358	1.74704878281332	1.80247309249004	2.36890028523333	2.38035023285672	1.89098220018471	1.21348827648847	0.222722683741442	0.714371794563311
Merged-chr15-101147303-2	chr15	101147230	101147430	+	928.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18808.0	NM_001277257	11482.0	Mm.279542	NM_009612	ENSMUSG00000000530	Acvrl1	AI115505|AI427544|Acvrlk1|Alk1	activin A receptor, type II-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-111422321-3	chr10	111422185	111422385	+	760.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C|LTR|ERVK	-50942.0	NM_001358932	53605.0	Mm.290407	NM_015781	ENSMUSG00000058799	Nap1l1	AA407126|AI256722|D10Ertd68e|NAP-1	nucleosome assembly protein 1-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-30986141-7	chr13	30985997	30986197	+	797.892883	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12050.0	NM_025588	66482.0	Mm.293510	NM_025588	ENSMUSG00000021357	Exoc2	2410030I24Rik|AI648199|Sec5|Sec5l1	exocyst complex component 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-50588475-2	chr6	50588375	50588575	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027564, intron 4 of 9)	intron (NM_027564, intron 4 of 9)	8115.0	NM_027564	70821.0	Mm.157323	NM_027564	ENSMUSG00000029828	4921507P07Rik	TISP74	RIKEN cDNA 4921507P07 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128806782-4	chr2	128806690	128806890	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11513.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	2.79347280696935	1.98661740814547	2.34767944590096	3.23005475738298	3.74918506025671	3.05967978814238	3.99009922656965	3.53965737999125	1.56426386235457	0.0157543096437213	0.150262874429831
Merged-chr14-63468296-2	chr14	63468196	63468396	+	544.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31902.0	NM_177628	219148.0	Mm.37882	NM_177628	ENSMUSG00000035095	Fam167a	A030013D21	family with sequence similarity 167, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-148876141-2	chr2	148876041	148876241	+	821.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009976)	promoter-TSS (NM_009976)	-629.0	NM_009976	13010.0	Mm.4263	NM_009976	ENSMUSG00000027447	Cst3	CysC	cystatin C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-84589113-4	chr18	84589013	84589213	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033341, intron 1 of 8)	CpG	391.0	NM_001033341	240476.0	Mm.329575	NM_001033341	ENSMUSG00000048410	Zfp407	6430585N13Rik|Gm333|Gm334|Gm948|ZNF407	zinc finger protein 407	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-64174688-4	chr15	64174588	64174788	+	779.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 5 of 28)	intron (NM_001276461, intron 5 of 28)	-114240.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140536808-3	chr5	140536734	140536934	+	858.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28233.0	NM_030022	77998.0	Mm.160040	NM_030022	ENSMUSG00000036586	Grifin	E130101O17Rik	galectin-related inter-fiber protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-155098947-5	chr1	155098868	155099068	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010500, exon 1 of 1)	exon (NM_010500, exon 1 of 1)	668.0	NM_010500	15939.0	Mm.12246	NM_010500	ENSMUSG00000056708	Ier5	-	immediate early response 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-63543747-2	chr4	63543647	63543847	+	578.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1018.0	NM_024173	66290.0	Mm.371615	NM_024173	ENSMUSG00000039105	Atp6v1g1	1810024D14Rik|AA960677|ATP6J|Atp6g1|VAG1|Vma10	ATPase, H+ transporting, lysosomal V1 subunit G1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-45448481-2	chr4	45448368	45448568	+	1000.0	f0_c57.idr|f1_c57bl6.idr	intron (NM_001033306, intron 3 of 5)	URR1B|DNA|hAT-Charlie	-39702.0	NM_001009949	230125.0	Mm.260210	NM_001009949	ENSMUSG00000045973	Slc25a51	9130208E07Rik|D130005A03Rik|Gm138|Mcart1	solute carrier family 25, member 51	protein-coding	5.36662291346369	6.2788713233148	4.99756558900872	5.77308820359324	3.46976904724286	1.81033480226756	1.71130025648532	2.57331944943517	-4.1191098607849	5.75851518490232e-05	0.00197026611754158
Merged-chr13-41850651-2	chr13	41850551	41850751	+	725.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3035.0	NM_001145875	109254.0	Mm.25195	NM_175417	ENSMUSG00000058022	Adtrp	9530008L14Rik	androgen dependent TFPI regulating protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78815927-4	chr15	78815874	78816074	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-12932.0	NM_130859	105844.0	Mm.17629	NM_130859	ENSMUSG00000033170	Card10	AI449026|Bimp1|Carma3	caspase recruitment domain family, member 10	protein-coding	2.25946691877642	2.18226349254369	3.12660869614775	3.29900865726993	3.70247492474978	1.63675378122501	4.18440741531384	3.92999188394504	1.31474230371687	0.0798740756816769	0.429744017950116
Merged-chr17-5651032-1	chr17	5650932	5651132	+	548.0	f1_c57bl6.idr	intron (NM_146073, intron 2 of 8)	intron (NM_146073, intron 2 of 8)	-147625.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-37692601-3	chr19	37692473	37692673	+	908.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001105201, intron 5 of 5)	intron (NM_001105201, intron 5 of 5)	-5235.0	NM_007811	13082.0	Mm.42230	NM_007811	ENSMUSG00000024987	Cyp26a1	Cyp26|P450RA|P450RAI|RAH	cytochrome P450, family 26, subfamily a, polypeptide 1	protein-coding	1.21123655391861	0.766453735786776	0.49317412921609	0.481098764287994	1.22585659588963	0.511796201735784	2.05631792581077	0.48322895554623	1.77798419791838	0.277321640353675	0.781366007374687
Merged-chr2-167001771-2	chr2	167001671	167001871	+	660.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR19|LTR|ERVK	-5472.0	NM_001109905	20853.0	Mm.73276	NM_011490	ENSMUSG00000039536	Stau1	5830401L18Rik|AW549911|C85792|Stau	staufen double-stranded RNA binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-80497066-3	chr18	80496946	80497146	+	686.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27379.0	NM_026295	67655.0	Mm.312893	NM_026295	ENSMUSG00000033323	Ctdp1	4930563P03Rik|AW553592	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-53536813-4	chr9	53536727	53536927	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007499)	promoter-TSS (NM_007499)	-156.0	NM_007499	11920.0	Mm.5088	NM_007499	ENSMUSG00000034218	Atm	AI256621|C030026E19Rik	ataxia telangiectasia mutated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141402576-2	chr7	141402476	141402676	+	778.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011528, intron 7 of 7)	(CA)n|Simple_repeat|Simple_repeat	10416.0	NM_011528	21351.0	Mm.29182	NM_011528	ENSMUSG00000025503	Taldo1	-	transaldolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-115740122-3	chr9	115740043	115740243	+	785.111145	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-169312.0	NM_028638	73748.0	Mm.485018	NM_028638	ENSMUSG00000056880	Gadl1	1110027M19Rik|ADC|CSADC	glutamate decarboxylase-like 1	protein-coding	0.874921860596372	0.875448681810209	0.840743883468378	1.03905319394812	1.06909266105582	0.530369660631204	0.522838382140548	0.679564968504063	-1.01198091404834	0.519829028496194	1
Merged-chr12-100925793-4	chr12	100925681	100925881	+	977.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026681, intron 25 of 29)	intron (NM_026681, intron 25 of 29)	-17583.0	NM_001177673	238377.0	Mm.32160	NM_175493	ENSMUSG00000047415	Gpr68	BB131428|Ogr1	G protein-coupled receptor 68	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-64078998-2	chr1	64078898	64079098	+	745.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_033563, exon 2 of 4)	exon (NM_033563, exon 2 of 4)	-36497.0	NR_105864	102466760.0		NR_105864	ENSMUSG00000098487	Mir6899	Gm27384|mmu-mir-6899	microRNA 6899	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-54613276-2	chr13	54613176	54613376	+	731.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	-1903.0	NM_001347512	74325.0	Mm.290026	NM_028870	ENSMUSG00000047547	Cltb	2310046E19Rik|lcb	clathrin, light polypeptide (Lcb)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55148665-4	chr14	55148569	55148769	+	897.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31734.0	NM_177049	319984.0	Mm.19047	NM_177049	ENSMUSG00000022208	Jph4	9330157P13Rik|JP-4|JPHL1	junctophilin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-54382402-3	chr14	54382302	54382502	+	814.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011405, intron 4 of 11)	MLTR14|LTR|ERV1	21561.0	NM_026936	69089.0	Mm.182340	NM_026936	ENSMUSG00000000959	Oxa1l	1810020M02Rik|AI894287	oxidase assembly 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-14579793-3	chr3	14579657	14579857	+	813.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007892, intron 1 of 7)	intron (NM_007892, intron 1 of 7)	1086.0	NM_007892	13559.0	Mm.153415	NM_007892	ENSMUSG00000027552	E2f5	AU024671|E2F-5	E2F transcription factor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-21242394-1	chr11	21242294	21242494	+	552.0	f1_c57bl6.idr	intron (NM_001290628, intron 1 of 22)	intron (NM_001290628, intron 1 of 22)	3362.0	NM_001290628	245944.0	Mm.170103	NM_139061	ENSMUSG00000020128	Vps54	Hcc8|Vps54l|mSLP8|wr	VPS54 GARP complex subunit	protein-coding	2.26400248214703	3.183564839051	3.31172011447149	1.44022726584432	1.91755220355038	2.33515301992825	1.49795426829904	1.17131377254821	-2.02566073795529	0.0390501377020223	0.281738952397138
Merged-chr11-76568002-2	chr11	76567902	76568102	+	568.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198894, intron 1 of 22)	intron (NM_198894, intron 1 of 22)	3382.0	NM_198895	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-59176213-2	chr18	59176113	59176313	+	784.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081328, exon 1 of 3)	exon (NM_001081328, exon 1 of 3)	873.0	NM_001081328	78923.0	Mm.84007	NM_001081328	ENSMUSG00000058152	Chsy3	4833446K15Rik|AI662215	chondroitin sulfate synthase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117026461-2	chr10	117026361	117026561	+	561.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18880.0	NM_146242	237560.0	Mm.37320	NM_146242	ENSMUSG00000060187	Lrrc10	D330003I11Rik|Hrlrrp|Serdin1	leucine rich repeat containing 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-20693679-3	chr16	20693582	20693782	+	912.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001304432)	TTS (NM_001304432)	-1375.0	NM_133778	78408.0	Mm.196512	NM_133778	ENSMUSG00000050821	Fam131a	2900046G09Rik	family with sequence similarity 131, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-138490765-3	chr3	138490695	138490895	+	640.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1413.0	NM_175224	75624.0	Mm.26833	NM_175224	ENSMUSG00000005813	Metap1	1700029C17Rik|AW047992|mKIAA0094	methionyl aminopeptidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-45362924-2	chr19	45362824	45363024	+	707.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009771)	promoter-TSS (NM_009771)	-810.0	NM_001360122	12234.0	Mm.119717	NM_009771	ENSMUSG00000025217	Btrc	Beta-Trcp1|E3RS-IkappaB|E3RSIkappaB|FWD1|Fbw1a|HOS|SCF b-TRCP|Slimb|b-TrCP|beta-TrCP	beta-transducin repeat containing protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-98259473-4	chr12	98259379	98259579	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008079)	promoter-TSS (NM_008079)	-20.0	NM_008079	14420.0	Mm.5120	NM_008079	ENSMUSG00000021003	Galc	2310068B06Rik|A930008M05Rik|AW212969|AW413532|Gacy|twi|twitcher	galactosylceramidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-21735919-3	chr3	21735813	21736013	+	886.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVB4_2-LTR_MM|LTR|ERVK	-340739.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-29607294-4	chr16	29607209	29607409	+	910.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133752, intron 7 of 28)	intron (NM_133752, intron 7 of 28)	27975.0	NM_001199177	74143.0	Mm.274285	NM_133752	ENSMUSG00000038084	Opa1	1200011N24Rik|AI225888|AI847218|lilr3|mKIAA0567	OPA1, mitochondrial dynamin like GTPase	protein-coding	3.17292411243953	2.98269502487764	2.04307564039129	1.98544768150312	2.58072155165344	2.64526232701666	3.39043083127842	3.07741252026861	0.555643978825593	0.45959980783236	0.920273446991432
Merged-chr7-19832055-4	chr7	19831974	19832174	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9319.0	NM_033601	12051.0	Mm.439658	NM_033601	ENSMUSG00000053175	Bcl3	AI528691|Bcl-3	B cell leukemia/lymphoma 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-12471942-2	chr10	12471842	12472042	+	605.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011682, intron 57 of 73)	Lx9|LINE|L1	389793.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-28514117-2	chr16	28514017	28514217	+	935.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010199, intron 2 of 5)	intron (NM_010199, intron 2 of 5)	50378.0	NM_001357064	14167.0	Mm.7996	NM_010199	ENSMUSG00000022523	Fgf12	AV114868|B230343J05Rik|FGF-12|FHF-1|Fhf1	fibroblast growth factor 12	protein-coding	-1.18378942727406	-1.15669478905697	-0.457913181653105	-1.17806440097404	-1.18323730008524	-1.15415234459186	-1.16577117532349	-1.17633933179771	-2.81844548480871	0.412768592413622	1
Merged-chr7-90147069-2	chr7	90146969	90147169	+	548.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360867, intron 1 of 19)	intron (NM_001360867, intron 1 of 19)	16856.0	NM_001252520	233489.0	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-72411494-4	chr4	72411376	72411576	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	210232.0	NR_027923	68285.0	Mm.37541	NR_027923		C630043F03Rik	AI851307	RIKEN cDNA C630043F03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-62374410-4	chr9	62374331	62374531	+	682.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009672, intron 4 of 6)	intron (NM_009672, intron 4 of 6)	33088.0	NM_009672	11737.0	Mm.269088	NM_009672	ENSMUSG00000032249	Anp32a	Anp32|I1PP2A|LANP|PHAP1|W91701|pp32	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-16359536-4	chr2	16359441	16359641	+	852.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026162, intron 1 of 13)	intron (NM_026162, intron 1 of 13)	3237.0	NM_026162	67448.0	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3418955-4	chr12	3418849	3419049	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030694, intron 1 of 2)	intron (NR_030694, intron 1 of 2)	7798.0	NR_030694	100043040.0	Mm.415417	NR_030694	ENSMUSG00000071456	1110002L01Rik	-	RIKEN cDNA 1110002L01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80790959-2	chr7	80790848	80791048	+	740.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_016721, intron 2 of 37)	B4|SINE|B4	12383.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	-0.369003129252594	-0.307951173433564	-0.500783089473472	-0.343239408011067	-0.507504864328901	0.11477387636987	-0.499984375148545	-0.503086093447363	0.704307804005727	0.77408349773959	1
Merged-chr9-55541813-2	chr9	55541713	55541913	+	765.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027397, intron 1 of 5)	CpG	664.0	NM_027397	104360.0	Mm.273996	NM_027397	ENSMUSG00000032318	Isl2	3110001N10Rik	insulin related protein 2 (islet 2)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-86942919-4	chr5	86942817	86943017	+	917.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3C|LINE|L1	-16414.0	NM_152811	71773.0	Mm.26741	NM_152811	ENSMUSG00000035836	Ugt2b1	1300012D20Rik	UDP glucuronosyltransferase 2 family, polypeptide B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-155224168-2	chr4	155224068	155224268	+	894.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1633.0	NM_001357191	20481.0	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45333667-4	chr7	45333582	45333782	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175130)	promoter-TSS (NM_175130)	98.0	NM_175130	68667.0	Mm.439890	NM_175130	ENSMUSG00000038260	Trpm4	1110030C19Rik|AW047689|LTRPC4|LTrpC-4|TRPM4B	transient receptor potential cation channel, subfamily M, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-28866341-4	chr6	28866248	28866448	+	737.216675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019776, intron 16 of 23)	intron (NM_019776, intron 16 of 23)	-34601.0	NM_138682	192198.0	Mm.443660	NM_138682	ENSMUSG00000049939	Lrrc4	MBAG1|NGL-2|NGL2|NLG-2|Nag14	leucine rich repeat containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-77976817-5	chr10	77976842	77977042	+	800.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1708.0	NM_026431	67884.0	Mm.297512	NM_026431	ENSMUSG00000020284	1810043G02Rik	AV026620|D10Jhu13e	RIKEN cDNA 1810043G02 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171007280-2	chr1	171007180	171007380	+	596.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11646.0	NM_144559	246256.0	Mm.251254	NM_144559	ENSMUSG00000059089	Fcgr4	4833442P21Rik|CD16-2|FcgRIV|FcgammaRIV|Fcgr3a|Fcrl3	Fc receptor, IgG, low affinity IV	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-121139436-3	chr2	121139354	121139554	+	720.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290812)	promoter-TSS (NM_001290812)	-974.0	NM_001355748	75894.0	Mm.384805	NM_029475	ENSMUSG00000027259	Adal	4930578F03Rik	adenosine deaminase-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114880624-6	chr11	114880435	114880635	+	865.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9506.0	NM_001347654	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167906968-4	chr2	167906859	167907059	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur3|SINE|Alu	-25368.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167886699-4	chr2	167886602	167886802	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45625.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70630835-2	chr11	70630735	70630935	+	626.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-8287.0	NM_010326	14723.0	Mm.377085	NM_010326	ENSMUSG00000050675	Gp1ba	GP-Ib alpha|GPIba|GPIbalpha	glycoprotein 1b, alpha polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-48131452-2	chr14	48131337	48131537	+	741.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_033602, intron 1 of 5)	intron (NM_033602, intron 1 of 5)	10568.0	NM_033602	93834.0	Mm.296457	NM_033602	ENSMUSG00000021846	Peli2	AW047589|BB129927	pellino 2	protein-coding	2.53514166614038	1.51937532682322	2.53743526996938	2.34889069192655	3.05081203927262	2.37560146320187	2.66743664466544	2.85661073083396	0.965973638931201	0.230575146389901	0.724578472075965
Merged-chr15-96640874-4	chr15	96640775	96640975	+	999.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166458, intron 1 of 15)	intron (NM_001166458, intron 1 of 15)	1087.0	NM_134086	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-65870340-4	chr17	65870258	65870458	+	892.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009067, intron 1 of 9)	B3A|SINE|B2	14565.0	NM_001198949	19765.0	Mm.17009	NM_009067	ENSMUSG00000024096	Ralbp1	RLIP76|Rip1	ralA binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-84693045-3	chr3	84692950	84693150	+	697.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177260, intron 6 of 6)	intron (NM_177260, intron 6 of 6)	26858.0	NM_177260	320782.0	Mm.107370	NM_177260	ENSMUSG00000056498	Tmem154	9930117H01Rik	transmembrane protein 154	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-140112397-7	chr7	140112329	140112529	+	970.108826	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_053119, exon 3 of 8)	exon (NM_053119, exon 3 of 8)	3994.0	NM_053119	93747.0	Mm.24452	NM_053119	ENSMUSG00000025465	Echs1	C80529	enoyl Coenzyme A hydratase, short chain, 1, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-60878014-2	chr11	60877914	60878114	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001168507, intron 1 of 2)	intron (NM_001168507, intron 1 of 2)	1024.0	NM_173453	216821.0	Mm.28063	NM_173453	ENSMUSG00000043284	Tmem11	5730466P16Rik|AA409091	transmembrane protein 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-58455773-2	chr13	58455673	58455873	+	563.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52430.0	NM_001301341	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-48097477-2	chr17	48097377	48097577	+	889.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7099.0	NR_110485	320638.0	Mm.404482	NR_110485		A730006G06Rik	-	RIKEN cDNA A730006G06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-82679-1	chr1	82579	82779	+	602.0	f1_c57bl6.idr	Intergenic	Intergenic	3588819.0	NM_001011874	497097.0	Mm.454496	NM_001011874	ENSMUSG00000051951	Xkr4	AY534250|Gm210|XRG4|mKIAA1889	X-linked Kx blood group related 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-46149987-4	chr2	46149877	46150077	+	856.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	453372.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-119157416-1	chr4	119157316	119157516	+	555.0	f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	16440.0	NM_001145935	195522.0	Mm.169620	NM_183140	ENSMUSG00000045268	Zfp691	6430544H17Rik|Znf691	zinc finger protein 691	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-37361158-2	chr10	37361058	37361258	+	637.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-222232.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-138187430-4	chr5	138187316	138187516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178612)	promoter-TSS (NM_178612)	35.0	NM_001356602	21343.0	Mm.248517	NM_009315	ENSMUSG00000036980	Taf6	80kDa|AW549759|TAF(II)80|TAFII70|Taf2e|p80	TATA-box binding protein associated factor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-52930383-6	chr2	52930341	52930541	+	929.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	72573.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153346421-4	chr2	153346316	153346516	+	973.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040318)	promoter-TSS (NR_040318)	277.0	NM_001039939	228790.0	Mm.330677	NM_001039939	ENSMUSG00000042548	Asxl1	mKIAA0978	additional sex combs like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85395244-2	chr12	85395144	85395344	+	940.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20527.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-22824009-3	chr9	22823907	22824107	+	834.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360259, intron 21 of 22)	intron (NM_001360259, intron 21 of 22)	348292.0	NM_181316	319845.0	Mm.176725	NM_178415	ENSMUSG00000035919	Bbs9	E130103I17Rik	Bardet-Biedl syndrome 9 (human)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-86950424-4	chr17	86950341	86950541	+	764.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2554.0	NM_029121	74915.0	Mm.159369	NM_029121	ENSMUSG00000053375	Atp6v1e2	4930500C14Rik|Atp6e1|E1	ATPase, H+ transporting, lysosomal V1 subunit E2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-147059505-4	chr5	147059386	147059586	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080795, intron 1 of 9)	intron (NM_080795, intron 1 of 9)	17086.0	NM_080795	140887.0	Mm.272203	NM_080795	ENSMUSG00000016520	Lnx2	9630046H24|AW209022	ligand of numb-protein X 2	protein-coding	4.78236641792838	4.83304979114481	4.82269741204118	5.1270293508022	6.15178515675553	6.31886580887088	6.5341720201985	5.93174223589166	1.5208218014981	1.23183769335237e-08	1.40312550425713e-06
Merged-chr5-99221655-2	chr5	99221555	99221755	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_181318, intron 12 of 13)	intron (NM_181318, intron 12 of 13)	31272.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-110117314-5	chr9	110117266	110117466	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001252682, exon 1 of 23)	5' UTR (NM_001252682, exon 1 of 23)	250.0	NM_001252682	72831.0	Mm.276305	NM_133347	ENSMUSG00000032480	Dhx30	2810477H02Rik|C130058C04Rik|Ddx30|HELG|Ret-CoR	DEAH (Asp-Glu-Ala-His) box polypeptide 30	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-4812822-4	chr7	4812718	4812918	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133777)	promoter-TSS (NM_133777)	-478.0	NM_133777	77891.0	Mm.389787	NM_133777	ENSMUSG00000060860	Ube2s	0910001J09Rik|6720465F12Rik|AA409170|E2-EPF	ubiquitin-conjugating enzyme E2S	protein-coding	6.34124952748215	6.65877770311362	6.74858407158069	6.34792593309738	6.31668907210115	6.55254638736436	6.78734816285364	6.43196522900606	-0.00206953211353425	0.991924788307182	0.998431161219273
Merged-chr17-29392885-2	chr17	29392785	29392985	+	732.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31971.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70567080-2	chr8	70566980	70567180	+	939.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007924, intron 1 of 11)	MTC|LTR|ERVL-MaLR	-27401.0	NM_023627	71780.0	Mm.29357	NM_023627	ENSMUSG00000019139	Isyna1	1300017C10Rik|AU018670	myo-inositol 1-phosphate synthase A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-119777144-2	chr8	119777044	119777244	+	591.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028883, intron 1 of 7)	intron (NM_028883, intron 1 of 7)	1272.0	NM_028883	74347.0	Mm.358759	NM_028883	ENSMUSG00000034105	Tldc1	4632415K11Rik|Kiaa1609	TBC/LysM associated domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117081954-4	chr10	117081820	117082020	+	741.674988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177798, intron 5 of 9)	B1_Mm|SINE|Alu	-18068.0	NM_007636	12461.0	Mm.247788	NM_007636	ENSMUSG00000034024	Cct2	Cctb	chaperonin containing Tcp1, subunit 2 (beta)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91071169-2	chr2	91071069	91071269	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026721)	promoter-TSS (NM_026721)	-854.0	NM_001290765	68427.0	Mm.192375	NM_026721	ENSMUSG00000002105	Slc39a13	1100001L14Rik|AA387663|ZIP-13|ZIP13	solute carrier family 39 (metal ion transporter), member 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-132168669-1	chr3	132168569	132168769	+	660.0	f0_balb.idr	intron (NM_020265, intron 1 of 3)	intron (NM_020265, intron 1 of 3)	83377.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129623028-2	chr2	129622928	129623128	+	575.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355158, intron 7 of 8)	intron (NM_001355158, intron 7 of 8)	27566.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-55398710-4	chr12	55398609	55398809	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011968)	promoter-TSS (NM_011968)	-116.0	NM_011968	26443.0	Mm.30210	NM_011968	ENSMUSG00000021024	Psma6	IOTA	proteasome (prosome, macropain) subunit, alpha type 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-75217984-1	chr10	75217884	75218084	+	595.0	f0_balb.idr	intron (NM_001145826, intron 1 of 18)	ORR1B1|LTR|ERVL-MaLR	5594.0	NM_001145826	74392.0	Mm.27716	NM_153406	ENSMUSG00000033444	Specc1l	4930470P14Rik|4932439K10Rik|9530057A13Rik|AI317249|Cytsa|mKIAA0376	sperm antigen with calponin homology and coiled-coil domains 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-14042886-4	chr10	14042735	14042935	+	963.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358783, intron 2 of 12)	intron (NM_001358783, intron 2 of 12)	76456.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	3.28710490542181	1.77297551392016	3.31506990802956	3.02711085107366	3.57111185314002	3.91756819807883	3.66123226631015	3.74374430677423	1.16081356426617	0.0564553113435954	0.350837789451204
Merged-chr2-27675194-2	chr2	27675084	27675284	+	561.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2017.0	NM_011305	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-7418550-2	chr19	7418450	7418650	+	590.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175381, intron 1 of 4)	intron (NM_175381, intron 1 of 4)	925.0	NM_175381	108899.0	Mm.386838	NM_175381	ENSMUSG00000053080	2700081O15Rik	AI255177|AI848741|AW742297	RIKEN cDNA 2700081O15 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-94601533-4	chr15	94601433	94601633	+	943.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-11709.0	NM_008971	19230.0	Mm.490250	NM_008971	ENSMUSG00000022451	Twf1	A6|Ptk9|twinfilin	twinfilin actin binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-105879876-2	chr5	105879776	105879976	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_030777, intron 2 of 9)	intron (NR_030777, intron 2 of 9)	3308.0	NM_018759	54367.0	Mm.248876	NM_018759	ENSMUSG00000029290	Zfp326	5730470H14Rik|ZAN75|Znf326	zinc finger protein 326	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-100616019-4	chr15	100615933	100616133	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045701)	promoter-TSS (NR_045701)	371.0	NM_011873	23994.0	Mm.486175	NM_011873	ENSMUSG00000000346	Dazap2	AI314727|Brbp|Gcap28|Prtb|gt6-12|mKIAA0058	DAZ associated protein 2	protein-coding	2.97875750950939	3.48102112324309	2.97703318263602	2.45580897889084	2.67443412646572	3.19578704453438	2.54988550821218	1.49742492853616	-0.752507668974797	0.332930699863067	0.833345452772687
Merged-chr11-101140102-2	chr11	101140002	101140202	+	684.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15782.0	NM_134028	103768.0	Mm.142348	NM_134028	ENSMUSG00000045007	Tubg2	AI504772|Tubgl	tubulin, gamma 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-110656559-4	chr9	110656474	110656674	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028312)	promoter-TSS (NM_028312)	71.0	NM_028312	72654.0	Mm.249115	NM_028312	ENSMUSG00000019659	Ccdc12	2700094L05Rik|C76605	coiled-coil domain containing 12	protein-coding	0.165006033178263	0.178258655655744	0.458968936240612	0.542793075845396	0.401241468463116	0.179255645312585	0.67947466245352	0.314285942820452	0.487421038614829	0.799009351480026	1
Merged-chr7-126759474-4	chr7	126759366	126759566	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011952)	promoter-TSS (NM_011952)	-160.0	NM_011952	26417.0	Mm.8385	NM_011952	ENSMUSG00000063065	Mapk3	Erk-1|Erk1|Ert2|Esrk1|Mnk1|Mtap2k|Prkm3|p44|p44erk1|p44mapk	mitogen-activated protein kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-130310457-2	chr4	130310357	130310557	+	727.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010174, intron 1 of 3)	intron (NM_010174, intron 1 of 3)	1679.0	NM_010174	14077.0	Mm.388886	NM_010174	ENSMUSG00000028773	Fabp3	Fabph-1|Fabph-4|Fabph1|Fabph4|H-FABP|Mdgi	fatty acid binding protein 3, muscle and heart	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118239398-2	chr11	118239298	118239498	+	793.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	9194.0	NM_001112699	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-139616847-4	chr4	139616727	139616927	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_183148, exon 12 of 12)	3' UTR (NM_183148, exon 12 of 12)	-6067.0	NM_175438	212647.0	Mm.273571	NM_175438	ENSMUSG00000028737	Aldh4a1	A930035F14Rik|Ahd-1|Ahd1|Aldh4|Aldh5a1|E330022C09|P5cd|P5cdh|P5cdhl|P5cdhs|Ssdh1	aldehyde dehydrogenase 4 family, member A1	protein-coding	2.97622272913007	3.24801504754575	3.50846673169457	2.65187208068825	1.74225321569395	3.17891154665133	2.86949046879353	2.88445916739585	-0.655635121946033	0.357203868485007	0.853959579582101
Merged-chr3-94456657-4	chr3	94456556	94456756	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13320.0	NM_030116	78523.0	Mm.218515	NM_030116	ENSMUSG00000028140	Mrpl9	8030480E20Rik|AA409733|C330013D18Rik|L9mt	mitochondrial ribosomal protein L9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-97487192-2	chr16	97487092	97487292	+	593.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_020622, intron 2 of 7)	intron (NM_020622, intron 2 of 7)	17744.0	NM_020622	52793.0	Mm.327932	NM_020622	ENSMUSG00000022938	Fam3b	2-21|9030624C24Rik|D16Jhu19e|ORF9|Pander	family with sequence similarity 3, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-13662110-10	chr9	13661968	13662168	+	984.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173776)	promoter-TSS (NM_173776)	-392.0	NM_173776	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-134532718-2	chr1	134532618	134532818	+	598.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	16964.0	NM_001145300	71001.0	Mm.158529	NM_183292	ENSMUSG00000046367	Mgat4e	4931440L10Rik	MGAT4 family, member E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-31190779-4	chr6	31190682	31190882	+	949.3250119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110470, intron 1 of 2)	intron (NR_110470, intron 1 of 2)	27692.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-30603240-2	chr14	30603140	30603340	+	799.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011103, intron 9 of 17)	RSINE1|SINE|B4	7070.0	NM_001310682	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-119502703-4	chr1	119502603	119502803	+	961.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022327, intron 1 of 4)	RSINE1|SINE|B4	2079.0	NM_022327	64143.0	Mm.27832	NM_022327	ENSMUSG00000004451	Ralb	5730472O18Rik	v-ral simian leukemia viral oncogene B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-72428743-4	chr1	72428664	72428864	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001045533, exon 4 of 4)	exon (NM_001045533, exon 4 of 4)	107800.0	NM_001045533	381270.0	Mm.337023	NM_001045533	ENSMUSG00000039372	March4	BC056494|mKIAA1399	membrane-associated ring finger (C3HC4) 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99971424-2	chr15	99971324	99971524	+	564.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_028124)	TTS (NR_028124)	-1356.0	NM_001024526	207214.0	Mm.28811	NM_001024526	ENSMUSG00000023025	Larp4	DXErtd793|DXErtd793e	La ribonucleoprotein domain family, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-14231616-4	chr2	14231515	14231715	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008625, intron 1 of 29)	intron (NM_008625, intron 1 of 29)	2201.0	NM_008625	17533.0	Mm.2019	NM_008625	ENSMUSG00000026712	Mrc1	AW259686|CD206|MR	mannose receptor, C type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-31149847-4	chr8	31149717	31149917	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199988)	promoter-TSS (NM_001199988)	-499.0	NM_144927	234138.0	Mm.349800	NM_144927	ENSMUSG00000031577	Tti2	-	TELO2 interacting protein 2	protein-coding	6.01613501849512	5.81512480509725	6.16990589068285	4.93834418092853	5.89455586107495	6.39049995265438	6.17105185218579	5.64056795034967	0.264653227836555	0.359678526945427	0.856306289008338
Merged-chr7-13277403-2	chr7	13277303	13277503	+	561.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199310)	promoter-TSS (NM_001199310)	90.0	NM_001199310	16881.0	Mm.288179	NM_010715	ENSMUSG00000056394	Lig1	AL033288|LigI	ligase I, DNA, ATP-dependent	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-31083651-2	chr2	31083551	31083751	+	552.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355105, intron 5 of 15)	B4A|SINE|B4	12849.0	NM_001177650	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-50125948-2	chr10	50125848	50126048	+	667.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3_Mus|LINE|L1	-337182.0	NM_001111268	14806.0	Mm.185993	NM_010349	ENSMUSG00000056073	Grik2	AW124492|C130030K03Rik|GluK2|Glur-6|Glur6|Glurbeta2	glutamate receptor, ionotropic, kainate 2 (beta 2)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-21384317-1	chr5	21384217	21384417	+	624.0	f0_balb.idr	intron (NM_029195, intron 2 of 18)	intron (NM_029195, intron 2 of 18)	11644.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133750342-2	chr4	133750242	133750442	+	722.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080819, intron 1 of 19)	intron (NM_001080819, intron 1 of 19)	3269.0	NM_001080819	93760.0	Mm.22478	NM_001080819	ENSMUSG00000007880	Arid1a	1110030E03Rik|BAF250a|Osa1|Smarcf1	AT rich interactive domain 1A (SWI-like)	protein-coding	-0.795614833823998	-0.786336807896898	-0.789385015939899	-0.791731170198697	-0.417731367456157	-0.784588885553199	-0.788713411686562	-0.258531662084455	3.1330601925306	0.28800364166158	1
Merged-chr14-8210012-2	chr14	8209912	8210112	+	691.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4069.0	NM_027782	71393.0	Mm.292712	NM_027782	ENSMUSG00000021752	Kctd6	5430433B02Rik|AU044285	potassium channel tetramerisation domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-3132244-4	chr11	3132166	3132366	+	975.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_003517)	TTS (NR_003517)	8245.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132514095-4	chr4	132513995	132514195	+	968.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3639.0	NM_144907	230784.0	Mm.23608	NM_144907	ENSMUSG00000028893	Sesn2	HI95|SEST2|Ses2	sestrin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-99394494-2	chr12	99394394	99394594	+	732.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183186, intron 1 of 5)	intron (NM_183186, intron 1 of 5)	55580.0	NM_183186	71375.0	Mm.341972	NM_183186	ENSMUSG00000033713	Foxn3	5430426H20Rik|AA589593|AW556347|Ches1|Ches1l|HTLFL1	forkhead box N3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-72407134-3	chr12	72406997	72407197	+	654.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153457, intron 1 of 8)	intron (NM_153457, intron 1 of 8)	1957.0	NM_001286448	104001.0	Mm.221275	NM_153457	ENSMUSG00000021087	Rtn1	Nsp	reticulon 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-29557302-4	chr6	29557185	29557385	+	845.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177296, intron 17 of 22)	A-rich|Low_complexity|Low_complexity	28003.0	NM_001252382	27056.0	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-84688812-2	chr7	84688712	84688912	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_038175)	promoter-TSS (NR_038175)	-828.0	NR_038175	72495.0	Mm.382914	NR_038175	ENSMUSG00000085236	2610206C17Rik	-	RIKEN cDNA 2610206C17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171111310-5	chr1	171111241	171111441	+	977.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10320.0	NM_001081275	75472.0	Mm.32760	NM_029301	ENSMUSG00000026649	Cfap126	1700009P17Rik|AV282292|Flattop|Fltp	cilia and flagella associated protein 126	protein-coding	3.78825971280117	3.78359133049698	4.21742370832908	4.40507382531873	3.75694882254955	4.26295261596853	3.92542195374748	4.66778408756605	0.164637381764254	0.714000354580918	0.998431161219273
Merged-chr6-31080831-4	chr6	31080717	31080917	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17724.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-73932845-2	chr17	73932745	73932945	+	897.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011723, intron 6 of 35)	intron (NM_011723, intron 6 of 35)	17351.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-48832232-4	chr16	48832140	48832340	+	993.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10312.0	NM_020509	57262.0	Mm.441868	NM_020509	ENSMUSG00000061100	Retnla	1810019L16Rik|Fizz-1|Fizz1|HIMF|RELM-alpha|RELMa|RELMalpha|Xcp2	resistin like alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166775204-2	chr2	166775104	166775304	+	565.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-18563.0	NM_023815	76367.0	Mm.330796	NM_023815	ENSMUSG00000042854	Trp53rkb	2810408M09Rik|4933401B08Rik|5630401H01Rik|Nori-2|PRPK|Tp53rk|Trp53rk|Trp53tk|mNori-2p	transformation related protein 53 regulating kinase B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-74976894-4	chr7	74976799	74976999	+	839.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53312.0	NR_131122	75205.0	Mm.399304	NR_131122	ENSMUSG00000108803	4930533N22Rik	Gm44904	RIKEN cDNA 4930533N22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-15637890-4	chr16	15637770	15637970	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011159)	promoter-TSS (NM_011159)	4.0	NM_011159	19090.0	Mm.71	NM_011159	ENSMUSG00000022672	Prkdc	AI326420|AU019811|DNA-PKcs|DNAPDcs|DNAPK|DNPK1|DOXNPH|HYRC1|XRCC7|dxnph|p460|scid|slip	protein kinase, DNA activated, catalytic polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-32965354-4	chr13	32965272	32965472	+	981.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011454)	promoter-TSS (NM_011454)	-141.0	NM_011454	20708.0	Mm.36526	NM_011454	ENSMUSG00000042842	Serpinb6b	NK13|Spi12|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 6b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-98896221-4	chr10	98896111	98896311	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18431.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-29890404-4	chr2	29890285	29890485	+	988.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013615, intron 1 of 16)	CpG	322.0	NM_013615	18286.0	Mm.330116	NM_013615	ENSMUSG00000026790	Odf2	AI848335|MMTEST29	outer dense fiber of sperm tails 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-25680886-4	chr15	25680786	25680986	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019472, intron 2 of 40)	ORR1D2|LTR|ERVL-MaLR	58336.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100701871-2	chr11	100701771	100701971	+	803.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030150, intron 5 of 12)	intron (NM_030150, intron 5 of 12)	2400.0	NM_030150	80861.0	Mm.271830	NM_030150	ENSMUSG00000017830	Dhx58	B430001I08Rik|D11Lgp2e|LPG2|Lgp2|RLR-3	DEXH (Asp-Glu-X-His) box polypeptide 58	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150248249-4	chr4	150248146	150248346	+	795.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023119, intron 11 of 11)	intron (NM_023119, intron 11 of 11)	10922.0	NM_001025388	433182.0	Mm.70666	NM_001025388	ENSMUSG00000059040	Eno1b	EG433182|Eno1|Gm5506	enolase 1B, retrotransposed	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-48943927-4	chr7	48943815	48944015	+	889.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-15158.0	NM_001111016	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-108079318-4	chr9	108079219	108079419	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_032543)	promoter-TSS (NM_032543)	-18.0	NM_001311152	84585.0	Mm.379272	NM_032543	ENSMUSG00000041528	Rnf123	BC003945|Kpc1	ring finger protein 123	protein-coding	2.57904161741479	3.53893756184065	1.62574334038316	3.60199731866053	3.01528438101902	4.13757430426621	3.18100141836248	3.26033130186901	0.66102948005901	0.355640276948589	0.853664850644233
Merged-chr17-34000366-4	chr17	34000263	34000463	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347346)	promoter-TSS (NM_001347346)	-16.0	NM_001347346	14972.0	Mm.422886	NM_001001892	ENSMUSG00000061232	H2-K1	H-2K|H-2K(d)|H2-K|K-f	histocompatibility 2, K1, K region	protein-coding	8.68481235160478	8.52768211621375	9.00034997715817	9.0608742044691	8.62772912091555	8.37964679480256	8.65558148789839	8.56124907627906	-0.280356414741576	0.0296611174507735	0.235055539745298
Merged-chr2-70838750-4	chr2	70838713	70838913	+	743.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13333.0	NM_172664	228012.0	Mm.136511	NM_172664	ENSMUSG00000041997	Tlk1	4930545J15Rik	tousled-like kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70795277-1	chr8	70795177	70795377	+	820.0	f1_c57bl6.idr	Intergenic	Intergenic	-2844.0	NM_199308	546071.0	Mm.250731	NM_199308	ENSMUSG00000031833	Mast3	BC024265|mKIAA0561	microtubule associated serine/threonine kinase 3	protein-coding	1.50560246451154	1.16804476602278	2.94230936995908	2.92142602033451	1.0483617034292	2.83356852769668	1.13754512932516	2.63998226260918	-0.38552540412574	0.840003526187398	0.998431161219273
Merged-chr5-66152433-4	chr5	66152321	66152521	+	998.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001127382)	promoter-TSS (NM_001127382)	-467.0	NM_001127382	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	2.33652323841548	1.14016924879183	0.599326242764257	0.581932365760355	2.20477669108099	0.62577248114996	0.878776280194697	0.585015478536371	-0.31780309013928	0.900524868921221	0.998431161219273
Merged-chr11-3141123-5	chr11	3140986	3141186	+	933.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030207, intron 21 of 32)	RMER4A|LTR|ERVK	17065.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3782614-2	chr4	3782516	3782716	+	696.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 11 of 12)	intron (NM_001111096, intron 11 of 12)	53039.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	-0.38649324623925	-0.193214692461769	-0.501514509156096	-0.503566867634649	-0.275028334033088	-0.498215193401856	-0.21518547436188	-0.503209715124929	0.296359009005835	0.90515745188301	1
Merged-chr17-84238385-3	chr17	84238287	84238487	+	991.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183021, intron 31 of 37)	intron (NM_183021, intron 31 of 37)	-50440.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3913045-4	chr12	3912951	3913151	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001271753, exon 23 of 23)	3' UTR (NM_001271753, exon 23 of 23)	21307.0	NM_153743	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-24092650-2	chr1	24092550	24092750	+	816.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026604, intron 1 of 20)	Charlie5|DNA|hAT-Charlie	7691.0	NM_026604	68187.0	Mm.87130	NM_026604	ENSMUSG00000026153	Fam135a	4921533L14Rik|AI256732|AI835491	family with sequence similarity 135, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-118881129-2	chr10	118881029	118881229	+	561.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12226.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-133134461-4	chr1	133134362	133134562	+	858.837524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133819, intron 1 of 1)	intron (NM_133819, intron 1 of 1)	3296.0	NM_133819	108954.0	Mm.293628	NM_133819	ENSMUSG00000046062	Ppp1r15b	1810033K10Rik|AI606441|C530022L24Rik|CReP	protein phosphatase 1, regulatory (inhibitor) subunit 15b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-29615405-2	chr17	29615326	29615526	+	891.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021419, intron 1 of 7)	intron (NM_021419, intron 1 of 7)	637.0	NM_021419	58230.0	Mm.305994	NM_021419	ENSMUSG00000090083	Rnf8	3830404E21Rik|AIP37|laXp180	ring finger protein 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-68637308-2	chr11	68637208	68637408	+	952.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	50271.0	NM_177779	276920.0	Mm.123046	NM_177779	ENSMUSG00000045915	Ccdc42	A530001H01Rik	coiled-coil domain containing 42	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-105293113-3	chr5	105293078	105293278	+	799.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194336, intron 1 of 10)	intron (NM_194336, intron 1 of 10)	521.0	NM_194336	100702.0	Mm.491210	NM_194336	ENSMUSG00000104713	Gbp6	AI595338|Mpa2l	guanylate binding protein 6	protein-coding	0.479646283313237	0.142389394336435	0.137169457059333	0.636429075177681	0.487883256390871	0.143568807086933	0.575773110485958	0.133856040180413	-0.126784599385638	0.950302940099585	1
Merged-chr5-142821837-4	chr5	142821710	142821910	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4423.0	NM_001122730	231861.0	Mm.354649	NM_178242	ENSMUSG00000039477	Tnrc18	BC025631|EG381742|Zfp469	trinucleotide repeat containing 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-122960574-4	chr4	122960481	122960681	+	813.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029662, intron 1 of 13)	intron (NM_029662, intron 1 of 13)	607.0	NM_029662	76574.0	Mm.331842	NM_029662	ENSMUSG00000028655	Mfsd2a	1700018O18Rik|Mfsd2|NLS1	major facilitator superfamily domain containing 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-90023669-3	chr7	90023543	90023743	+	968.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5516.0	NR_110365	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	2.2957122574694	2.67935421678698	2.68798332157921	2.30176745820649	2.66437178611103	1.76876759771161	2.70859732045504	2.03957894337565	-0.295652610169946	0.718178878557082	0.998431161219273
Merged-chr6-54248494-4	chr6	54248400	54248600	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163640, intron 6 of 12)	L1MB5|LINE|L1	-16358.0	NM_001311133	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-33557272-2	chr17	33557159	33557359	+	709.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_053214, intron 1 of 27)	ID_B1|SINE|B4	1552.0	NM_053214	17916.0	Mm.42019	NM_053214	ENSMUSG00000024300	Myo1f	C330006B10Rik	myosin IF	protein-coding	1.03051120540205	0.579893136221003	0.987788337161896	0.553151846016121	1.76400065123621	1.80818787481906	0.568284207276141	0.555232295762017	2.03131597855487	0.206947746362984	0.695098179808171
Merged-chr8-105171575-4	chr8	105171496	105171696	+	954.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161456, intron 2 of 4)	CpG-14413	922.0	NM_001161458	12400.0	Mm.2018	NM_022309	ENSMUSG00000031885	Cbfb	AI893578|PEA2|PEBP2b|Pebp2|Pebpb2	core binding factor beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-112298827-3	chr5	112298719	112298919	+	953.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001326590, intron 1 of 5)	intron (NM_001326590, intron 1 of 5)	22128.0	NM_009419	22022.0	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119923256-2	chr11	119923156	119923356	+	605.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_039557, intron 2 of 2)	RSINE1|SINE|B4	9446.0	NM_001085498	208092.0	Mm.306673	NM_001085498	ENSMUSG00000025371	Chmp6	2400004G01Rik	charged multivesicular body protein 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-15739324-4	chr6	15739243	15739443	+	862.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175088, intron 2 of 4)	ORR1E|LTR|ERVL-MaLR	18682.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95280944-2	chr3	95280844	95281044	+	894.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_173347, intron 1 of 7)	intron (NM_173347, intron 1 of 7)	1132.0	NM_173347	229589.0	Mm.14155	NM_173347	ENSMUSG00000015711	Prune1	9230112O05Rik|C130058A12|DRES-17|HTCD37|PRUNEM1|Prune|Prune-M1	prune exopolyphosphatase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-33274661-4	chr5	33274586	33274786	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198860, intron 1 of 9)	CpG	318.0	NM_001310535	13016.0	Mm.7286	NM_013502	ENSMUSG00000037373	Ctbp1	BARS|CtBP3/BARS|D4S115h|D5H4S115|D5H4S115E	C-terminal binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-25559401-2	chr9	25559311	25559511	+	646.166626	f0_balb.idr|f0_c57.idr	intron (NM_026189, intron 3 of 7)	Lx4B|LINE|L1	77814.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-129491473-4	chr6	129491385	129491585	+	890.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301096, intron 1 of 3)	intron (NM_001301096, intron 1 of 3)	15680.0	NM_138648	108078.0	Mm.293626	NM_138648	ENSMUSG00000030162	Olr1	LOX-1|SR-EI|Scare1	oxidized low density lipoprotein (lectin-like) receptor 1	protein-coding	3.22089286811938	3.69334457273104	3.30996149277155	3.86933271725396	3.16406619698614	3.71955296045813	3.33595459849898	3.94280725938153	0.0400000982696038	0.940415010322594	0.998431161219273
Merged-chr6-146405501-3	chr6	146405341	146405541	+	770.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019923, intron 10 of 56)	intron (NM_019923, intron 10 of 56)	96782.0	NM_010586	16439.0	Mm.7800	NM_010586	ENSMUSG00000030287	Itpr2	AI649341|InsP3R-2|InsP3R-5|Ip3r2|Itpr5|insP3R2	inositol 1,4,5-triphosphate receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-30389337-4	chr16	30389249	30389449	+	902.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001128094)	promoter-TSS (NM_001128094)	-819.0	NM_001128096	224088.0	Mm.8924	NM_001128094	ENSMUSG00000022533	Atp13a3	AU022875|Gm1745|Gm541|Gm542	ATPase type 13A3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-152714068-4	chr3	152713970	152714170	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178016)	promoter-TSS (NM_178016)	-30.0	NM_178016	329777.0	Mm.331447	NM_025662	ENSMUSG00000039047	Pigk	3000001O05Rik|Gm38470|PIG-K	phosphatidylinositol glycan anchor biosynthesis, class K	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-142708069-3	chr3	142707908	142708108	+	761.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173763, intron 2 of 13)	RLTR45|LTR|ERVK	6960.0	NM_001293560	229905.0	Mm.289643	NM_173763	ENSMUSG00000040213	Kyat3	Ccbl2|KATIII|Kat3	kynurenine aminotransferase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-137465344-4	chr4	137465218	137465418	+	995.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3485.0	NM_008305	15530.0	Mm.273662	NM_008305	ENSMUSG00000028763	Hspg2	AI852380|Pcn|Plc|per	perlecan (heparan sulfate proteoglycan 2)	protein-coding	0.837486792766489	0.546201065933216	1.61102486897247	1.16265670992509	0.510363919183006	0.548940806328579	0.536639055410031	1.47574003399836	-1.0122133531152	0.545627285598163	0.956582826101047
Merged-chr3-32867782-2	chr3	32867682	32867882	+	610.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013024, intron 6 of 20)	intron (NM_001013024, intron 6 of 20)	50156.0	NM_001013024	72607.0	Mm.316153	NM_001013024	ENSMUSG00000056900	Usp13	2700071E21Rik|AI848077|ISOT3|IsoT-3	ubiquitin specific peptidase 13 (isopeptidase T-3)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-143462162-2	chr7	143462062	143462262	+	650.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1112.0	NM_001161624	12577.0	Mm.168789	NM_009876	ENSMUSG00000037664	Cdkn1c	AL024410|CDKI|Kip2|p57(kip2)|p57Kip2	cyclin-dependent kinase inhibitor 1C (P57)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-23626008-4	chr16	23625898	23626098	+	679.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16079.0	NM_023386	67775.0	Mm.475107	NM_023386	ENSMUSG00000033355	Rtp4	5830458K16Rik|Ifrg28	receptor transporter protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-35163348-4	chr9	35163199	35163399	+	841.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027030, intron 2 of 5)	intron (NM_027030, intron 2 of 5)	12688.0	NM_027030	69305.0	Mm.229110	NM_027030	ENSMUSG00000032040	Dcps	1700001E16Rik|AA408441	decapping enzyme, scavenger	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124478547-4	chr6	124478442	124478642	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13758.0	NM_153508	232370.0	Mm.193701	NM_153508	ENSMUSG00000008153	Clstn3	CSTN3|Cs3|Cst-3|alc-beta	calsyntenin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141673357-1	chr4	141673257	141673457	+	709.5	f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	-9242.0	NM_001033150	69582.0	Mm.33220	NM_001033150	ENSMUSG00000028917	Plekhm2	2310034J19Rik|AI854247|mKIAA0842	pleckstrin homology domain containing, family M (with RUN domain) member 2	protein-coding	-0.336946168137031	0.269182550321605	-0.0142136326894332	-0.331885885638011	-0.195763407536614	-0.323953843736342	-0.153775893883916	-0.331352135206911	-1.78039102274985	0.452459374439589	1
Merged-chr13-98350811-2	chr13	98350711	98350911	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3434.0	NM_008242	15229.0	Mm.347441	NM_008242	ENSMUSG00000078302	Foxd1	AI385632|BF-2|FREAC4|Hfh10|Hfhbf2	forkhead box D1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-156675691-1	chr1	156675591	156675791	+	568.0	f1_balb.idr	Intergenic	L1M2|LINE|L1	-1352.0	NM_023141	30935.0	Mm.206737	NM_023141	ENSMUSG00000060519	Tor3a	Adir	torsin family 3, member A	protein-coding	1.13926149352017	0.752595302180524	0.740769875801368	1.4283567951959	1.52600125254362	0.755240443790965	1.25551517752302	1.43709383870045	0.937372925044427	0.52433969209748	0.948340152465298
Merged-chr10-83617513-2	chr10	83617413	83617613	+	839.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145220, intron 8 of 20)	intron (NM_145220, intron 8 of 20)	31151.0	NM_145220	216190.0	Mm.282985	NM_145220	ENSMUSG00000020263	Appl2	Dip3b	adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-70976455-2	chr5	70976355	70976555	+	587.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008066, intron 8 of 9)	Lx4A|LINE|L1	119394.0	NM_008066	14395.0	Mm.5304	NM_008066	ENSMUSG00000000560	Gabra2	C630048P16Rik|Gabra-2	gamma-aminobutyric acid (GABA) A receptor, subunit alpha 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-64967792-2	chr12	64967689	64967889	+	588.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_177805, exon 1 of 20)	exon (NM_177805, exon 1 of 20)	2047.0	NM_177805	328108.0	Mm.138465	NM_177805	ENSMUSG00000035614	Togaram1	A430041B07Rik|BC062107|C130034K06|Fam179b|mKIAA0423	TOG array regulator of axonemal microtubules 1	protein-coding	1.15015452506459	0.417686782310228	0.406513570686361	0.397753065893175	1.25025583000047	0.420178394821742	1.4987920355838	0.399292650408955	1.54254110971645	0.407733901659988	0.891845785649541
Merged-chr14-63381467-2	chr14	63381367	63381567	+	847.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007549, intron 6 of 12)	intron (NM_007549, intron 6 of 12)	35720.0	NM_007549	12143.0	Mm.3962	NM_007549	ENSMUSG00000014453	Blk	-	B lymphoid kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-122576762-4	chr10	122576674	122576874	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6883.0	NR_040616	319272.0	Mm.411763	NR_040616	ENSMUSG00000112095	A130077B15Rik	-	RIKEN cDNA A130077B15 gene	ncRNA	4.61417968019804	4.77059973581872	5.23076464754081	4.23590135558983	4.40712038392607	5.28803535227514	4.79364639760333	4.5695479082091	0.0498682042161561	0.894859415549389	0.998431161219273
Merged-chr16-55974595-4	chr16	55974503	55974703	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027965)	promoter-TSS (NR_027965)	14.0	NR_027965	66391.0	Mm.472722	NM_133677	ENSMUSG00000102101	Zbtb11os1	2310061J03Rik	zinc finger and BTB domain containing 11, opposite strand 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-121354195-2	chr5	121354095	121354295	+	547.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_181421, intron 64 of 75)	intron (NM_181421, intron 64 of 75)	31214.0	NM_001359947	231712.0	Mm.20488	NM_172275	ENSMUSG00000042726	Trafd1	1110008K06Rik|Fln29	TRAF type zinc finger domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-59205301-4	chr3	59205193	59205393	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177855, intron 15 of 43)	intron (NM_177855, intron 15 of 43)	5589.0	NM_028808	74191.0	Mm.90067	NM_028808	ENSMUSG00000036362	P2ry13	2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174	purinergic receptor P2Y, G-protein coupled 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100314762-2	chr11	100314662	100314862	+	649.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5187.0	NM_011508	20918.0	Mm.13886	NM_011508	ENSMUSG00000035530	Eif1	Sui1-rs1	eukaryotic translation initiation factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141845510-1	chr4	141845410	141845610	+	586.5	f0_c57.idr	intron (NM_001033875, intron 1 of 8)	intron (NM_001033875, intron 1 of 8)	849.0	NM_001033875	76701.0	Mm.489680	NM_001033875	ENSMUSG00000062478	Ctrc	1810044E12Rik	chymotrypsin C (caldecrin)	protein-coding	2.59334200497109	2.91486593538497	2.73044862757144	2.65222319767278	2.13876120009903	1.39853962889433	1.36170924988909	2.47744739607495	-1.74025862830085	0.0549881463136941	0.344815912615872
Merged-chr7-27330285-2	chr7	27330185	27330385	+	593.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_175641, exon 5 of 33)	exon (NM_175641, exon 5 of 33)	3363.0	NM_001113549	108075.0	Mm.272251	NM_175641	ENSMUSG00000040488	Ltbp4	2310046A13Rik	latent transforming growth factor beta binding protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-120528241-1	chr1	120528141	120528341	+	669.0	f0_c57.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-23217.0	NM_010766	17167.0	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	-1.05433787351555	-1.03521066959286	-1.04642845936568	-0.7533208799879	-1.05386630084284	-1.03277972775296	-1.04388899764806	-0.628846266594589	0.543540423446939	0.86770660567911	1
Merged-chr2-112392917-1	chr2	112392817	112393017	+	693.0	f0_balb.idr	intron (NM_024254, intron 1 of 9)	intron (NM_024254, intron 1 of 9)	13706.0	NM_024254	72425.0	Mm.425091	NM_024254	ENSMUSG00000027132	Katnbl1	2410042D21Rik|AA166487|AA473307|AI467442	katanin p80 subunit B like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-146185135-2	chr3	146185035	146185235	+	732.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001005846, intron 11 of 13)	intron (NM_001005846, intron 11 of 13)	34961.0	NM_001005846	68279.0	Mm.116862	NM_026656	ENSMUSG00000011008	Mcoln2	3300002C04Rik|AI549968|C86638|TRPML2	mucolipin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-137345964-4	chr4	137345867	137346067	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009861, intron 1 of 5)	ORR1D2|LTR|ERVL-MaLR	11792.0	NM_009861	12540.0	Mm.1022	NM_009861	ENSMUSG00000006699	Cdc42	AI747189|AU018915	cell division cycle 42	protein-coding	1.14965174002141	2.25258466158124	3.58577735106885	2.87348333023239	1.16029041441383	2.27129517886526	3.21207276584175	1.94057866310471	-0.711454524472071	0.485329540300403	0.931776801449365
Merged-chr15-103238210-2	chr15	103238110	103238310	+	570.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358950, intron 1 of 4)	intron (NM_001358950, intron 1 of 4)	1642.0	NM_001358950	12419.0	Mm.262059	NM_007626	ENSMUSG00000009575	Cbx5	2610029O15Rik|C75991|HP1|Hp1a|Hp1alpha	chromobox 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-130809246-2	chr4	130809146	130809346	+	671.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_011520, intron 1 of 4)	intron (NM_011520, intron 1 of 4)	16709.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-123287549-4	chr8	123287454	123287654	+	823.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016925, intron 26 of 42)	intron (NM_016925, intron 26 of 42)	31022.0	NM_016925	14087.0	Mm.6536	NM_016925	ENSMUSG00000032815	Fanca	AW208693|FACA	Fanconi anemia, complementation group A	protein-coding	3.94074540002582	3.3948818980914	4.00784238042652	4.02805268721661	4.59372029563835	4.65362321265266	5.30112932429027	4.38262582952745	1.17248845678952	0.00513216336412621	0.0682657384066367
Merged-chr16-64873969-4	chr16	64873876	64874076	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21975.0	NM_178647	106143.0	Mm.10160	NM_178647	ENSMUSG00000054604	Cggbp1	AA960172|AL023996|AW045841	CGG triplet repeat binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-21804384-2	chr6	21804284	21804484	+	573.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_173007, intron 6 of 8)	intron (NM_173007, intron 6 of 8)	48131.0	NM_173007	269831.0	Mm.21950	NM_173007	ENSMUSG00000029669	Tspan12	9030619E17|AI426782|AI663988|AW111457|Tm4sf12	tetraspanin 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-15149626-2	chr18	15149531	15149731	+	813.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_134112, intron 1 of 4)	intron (NM_134112, intron 1 of 4)	1815.0	NM_134112	106931.0	Mm.329299	NM_134112	ENSMUSG00000036225	Kctd1	4933402K10Rik|AI661543|AW553000	potassium channel tetramerisation domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-115997233-2	chr6	115997133	115997333	+	634.916626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2228.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-97082229-4	chr5	97082151	97082351	+	989.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_198422, exon 7 of 7)	3' UTR (NM_198422, exon 7 of 7)	29345.0	NM_001359910	231474.0	Mm.332505	NM_198422	ENSMUSG00000055725	Paqr3	6330415A20Rik|AY424292|RKTG	progestin and adipoQ receptor family member III	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81087371-2	chr10	81087271	81087471	+	879.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145365, intron 8 of 11)	B1_Mus2|SINE|Alu	11501.0	NM_145365	208677.0	Mm.294693	NM_145365	ENSMUSG00000035041	Creb3l3	BC010786|CREB-H|D10Bur1e	cAMP responsive element binding protein 3-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-41536428-2	chr15	41536328	41536528	+	662.166687	f1_balb.idr|f1_c57bl6.idr	intron (NR_152565, intron 2 of 17)	intron (NR_152565, intron 2 of 17)	87325.0	NM_001358977	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-123930218-2	chr4	123930118	123930318	+	638.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_017475, intron 6 of 6)	intron (NM_017475, intron 6 of 6)	12785.0	NM_017475	54170.0	Mm.220922	NM_017475	ENSMUSG00000028646	Rragc	AU041672|Gtr2|RAGC|TIB929|YGR163W	Ras-related GTP binding C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-6729619-3	chr7	6729519	6729719	+	851.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290994)	promoter-TSS (NM_001290994)	800.0	NM_008817	18616.0	Mm.389800	NM_008817	ENSMUSG00000002265	Peg3	AL022617|ASF-1|End4|Gcap4|Pw1|Zfp102|mKIAA0287	paternally expressed 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-32827184-4	chr12	32827081	32827281	+	919.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_045032)	TTS (NR_045032)	3065.0	NR_045032	100504486.0	Mm.440246	NR_045032		Gdap10	Gdap-ps	ganglioside-induced differentiation-associated-protein 10	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-130877167-2	chr1	130877067	130877267	+	998.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026976, intron 4 of 7)	intron (NM_026976, intron 4 of 7)	10244.0	NM_053095	93672.0	Mm.196691	NM_053095	ENSMUSG00000026420	Il24	FISP|Mda-7|Mda7|St16	interleukin 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-52997309-1	chr19	52997209	52997409	+	641.0	f1_balb.idr	intron (NM_133216, intron 17 of 20)	intron (NM_133216, intron 17 of 20)	13447.0	NR_105834	102465220.0		NR_105834	ENSMUSG00000098730	Mir6407	Gm27832|mmu-mir-6407	microRNA 6407	ncRNA	-1.26550836321643	-1.23538490674683	-1.24673049817958	-1.25605010478787	-1.26497736998827	-0.580802564315158	-1.24416210496749	-1.25438189966081	2.74054745292391	0.426663645876262	1
Merged-chr12-69892659-1	chr12	69892559	69892759	+	982.0	f0_balb.idr	promoter-TSS (NM_178628)	promoter-TSS (NM_178628)	-446.0	NM_178628	73991.0	Mm.474462	NM_178628	ENSMUSG00000021066	Atl1	4930435M24Rik|Adfsp|Fsp1|Spg3|Spg3a	atlastin GTPase 1	protein-coding	1.28625916291094	0.832832578599365	0.813788876833687	1.02366917762833	2.32493306036568	1.0960224726213	1.90991911362708	1.37374543109494	2.79672891613147	0.0358840828966957	0.26839949056834
Merged-chr3-142282970-2	chr3	142282870	142283070	+	822.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001190856, exon 8 of 15)	exon (NM_001190856, exon 8 of 15)	108880.0	NM_022554	56376.0	Mm.117709	NM_019808	ENSMUSG00000028273	Pdlim5	1110001A05Rik|AI987914|C87059|Enh|Enh1|Enh2|Enh3|LIM	PDZ and LIM domain 5	protein-coding	1.26312532752719	0.453075137243818	0.930383989232776	0.437512258860703	0.840862124667949	0.455040118158984	0.446254619821633	1.11790002855251	-0.377118521219524	0.832714474464864	1
Merged-chr9-51103307-3	chr9	51103158	51103358	+	883.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029654)	promoter-TSS (NR_029654)	-148.0	NR_029654	723932.0		NR_029654	ENSMUSG00000065587	Mir34c	Mirn34c|mir-34c|mmu-mir-34c	microRNA 34c	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123254919-1	chr5	123254819	123255019	+	622.0	f1_c57bl6.idr	Intergenic	B3A|SINE|B2	26729.0	NM_026000	67151.0	Mm.278997	NM_026000	ENSMUSG00000029440	Psmd9	1500011J20Rik|2610202L11Rik|Bridge-1|P27	proteasome (prosome, macropain) 26S subunit, non-ATPase, 9	protein-coding	0.399115374812793	-0.324377166258779	-0.329081895975205	-0.332718157057251	-0.33786661547057	-0.323317918103605	0.270218767939906	-0.332082498239624	-0.388592991459885	0.88268349017677	1
Merged-chr7-129398905-3	chr7	129398813	129399013	+	802.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	141819.0	NM_001080963	381925.0	Mm.39184	NM_001080963	ENSMUSG00000070366	Plpp4	C030048B12Rik|Gm1090|Ppapdc1a	phospholipid phosphatase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-17345065-4	chr19	17344939	17345139	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010265, intron 1 of 2)	intron (NM_010265, intron 1 of 2)	-5534.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	6.01040510791188	6.77978263761067	6.39738779308697	6.02493944412035	5.20761122444687	5.72141280714918	5.84679725893528	5.87428127429075	-0.716624514193964	0.00626272690359912	0.078902129629055
Merged-chr11-101069997-4	chr11	101069916	101070116	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013792)	promoter-TSS (NM_013792)	-78.0	NM_013792	27419.0	Mm.95452	NM_013792	ENSMUSG00000001751	Naglu	-	alpha-N-acetylglucosaminidase (Sanfilippo disease IIIB)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-121598507-2	chr10	121598403	121598603	+	814.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359618, intron 22 of 24)	intron (NM_001359618, intron 22 of 24)	-11709.0	NM_019786	56480.0	Mm.34580	NM_019786	ENSMUSG00000020115	Tbk1	1200008B05Rik|AI462036|AW048562	TANK-binding kinase 1	protein-coding	1.87122485798967	0.844695284696823	2.98017576670145	1.76370790554509	0.757358935100982	0.851026247306938	1.97412998187315	0.796462931450349	-2.27889916101813	0.304336741857972	0.805978749093158
Merged-chr12-113102713-2	chr12	113102613	113102813	+	840.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346696, intron 1 of 19)	intron (NM_001346696, intron 1 of 19)	4435.0	NM_054081	116870.0	Mm.212577	NM_054081	ENSMUSG00000021144	Mta1	-	metastasis associated 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100938836-3	chr11	100938731	100938931	+	888.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_213660, intron 1 of 23)	intron (NM_213660, intron 1 of 23)	709.0	NM_213660	20848.0	Mm.249934	NM_011486	ENSMUSG00000004040	Stat3	1110034C02Rik|AW109958|Aprf	signal transducer and activator of transcription 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-103211726-1	chr3	103211626	103211826	+	542.0	f1_c57bl6.idr	Intergenic	Intergenic	40071.0	NM_001356331	68183.0	Mm.104919	NM_026602	ENSMUSG00000005687	Bcas2	6430539P16Rik|AI132645|C76366|C80030	breast carcinoma amplified sequence 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-47348716-4	chr14	47348581	47348781	+	739.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-25179.0	NM_010705	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	2.41080841582983	0.831953001432703	1.10055830265831	1.06048196132397	1.82224655447453	0.839136142914969	0.806393583853921	3.2450676229362	1.28028875135152	0.535281663758789	0.95286627222167
Merged-chr7-28369964-2	chr7	28369864	28370064	+	869.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_138752, intron 4 of 18)	intron (NM_138752, intron 4 of 18)	2698.0	NM_138752	101497.0	Mm.235700	NM_138752	ENSMUSG00000037552	Plekhg2	AI194308|Clg|Cslg	pleckstrin homology domain containing, family G (with RhoGef domain) member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-34991696-4	chr13	34991597	34991797	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110331, intron 2 of 9)	MER77B|LTR|ERVL	2447.0	NM_011868	23986.0	Mm.491141	NM_011868	ENSMUSG00000021417	Eci2	Acbd2|Drs1|Hca88|Peci	enoyl-Coenzyme A delta isomerase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-109330890-1	chr11	109330790	109330990	+	542.0	f1_balb.idr	Intergenic	Intergenic	-15977.0	NR_027883	67927.0	Mm.394490	NR_027883	ENSMUSG00000099630	1700096J18Rik	-	RIKEN cDNA 1700096J18 gene	ncRNA	-1.06997269762433	-1.30473905204845	-1.3145270772132	-1.32256725251374	-1.06385251204029	-1.30261794616352	-1.3123112828633	-1.32112806497905	0.0394047164033882	0.991001358494878	1
Merged-chr4-135947943-3	chr4	135947841	135948041	+	903.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001357529, exon 1 of 9)	5' UTR (NM_001357529, exon 1 of 9)	535.0	NM_001357530	15356.0	Mm.482102	NM_008254	ENSMUSG00000028672	Hmgcl	AW476067|HL	3-hydroxy-3-methylglutaryl-Coenzyme A lyase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135817510-2	chr4	135817410	135817610	+	765.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38561.0	NM_001284196	14105.0	Mm.10229	NM_010178	ENSMUSG00000028676	Srsf10	FUSIP2|Fusip1|NSSR1|NSSR2|Nssr|SRrp40|Sfrs13a|Srsf13a|TASR|TASR1|TASR2	serine/arginine-rich splicing factor 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-12661336-1	chr18	12661236	12661436	+	610.0	f0_balb.idr	intron (NM_028341, intron 1 of 13)	intron (NM_028341, intron 1 of 13)	17803.0	NM_028341	72747.0	Mm.52526	NM_028341	ENSMUSG00000024424	Ttc39c	1700008N02Rik|2810439F02Rik	tetratricopeptide repeat domain 39C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139794421-2	chr5	139794321	139794521	+	684.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_010757, intron 1 of 2)	PB1D7|SINE|Alu	2885.0	NM_010757	17135.0	Mm.157313	NM_010757	ENSMUSG00000018143	Mafk	AW061068|NF-E2|Nfe2u	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein K (avian)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-82335350-2	chr14	82335250	82335450	+	854.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	1739940.0	NR_153783	102635012.0	Mm.399509	NR_153783	ENSMUSG00000115043	Gm32455	-	predicted gene, 32455	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-74375147-4	chr1	74375049	74375249	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013612)	promoter-TSS (NM_013612)	-54.0	NM_013612	18173.0	Mm.2913	NM_013612	ENSMUSG00000026177	Slc11a1	Bcg|Ity|Ity1|Lsh|Nramp|Nramp1|ity	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-25463099-3	chr14	25462922	25463122	+	659.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	3837.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-61490705-2	chr2	61490605	61490805	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-87881.0	NM_011529	21353.0	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-97741205-4	chr7	97741091	97741291	+	880.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2944.0	NM_175105	66333.0	Mm.29756	NM_175105	ENSMUSG00000042797	Aqp11	1700015P13Rik|AI648923|sjds	aquaporin 11	protein-coding	2.33561912548489	1.21535599471458	2.35555241006214	1.15831178837527	2.70264865750433	1.22228315281744	2.26553332768828	2.56547967170941	0.922943301935009	0.412859103178218	0.894884412850583
Merged-chr3-90036360-2	chr3	90036260	90036460	+	885.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001165987, intron 6 of 24)	B3|SINE|B2	-15276.0	NM_001287087	99650.0	Mm.300083	NM_025762	ENSMUSG00000027942	4933434E20Rik	5730552F22Rik|AI462154|NICE-3|NS5ATP4	RIKEN cDNA 4933434E20 gene	protein-coding	-0.257476824420966	0.0801765478599969	-0.249864952587401	0.0254688771322861	-0.256774555002875	0.0870779984990657	-0.249040753919603	0.0296649206564476	0.0345311254802624	0.98808982836323	1
Merged-chr12-3820803-4	chr12	3820707	3820907	+	859.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271753, intron 1 of 22)	intron (NM_001271753, intron 1 of 22)	13647.0	NM_001271753	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-25713334-3	chr3	25713239	25713439	+	732.694458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357095, intron 4 of 6)	RLTR26|LTR|ERVK	440647.0	NM_001163387	192167.0	Mm.316080	NM_138666	ENSMUSG00000063887	Nlgn1	6330415N05Rik|BB179718|NL1|Nlg1|mKIAA1070	neuroligin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-82917921-1	chr6	82917821	82918021	+	671.0	f1_balb.idr	exon (NM_011350, exon 10 of 14)	exon (NM_011350, exon 10 of 14)	21848.0	NM_001308374	20355.0	Mm.270543	NM_011350	ENSMUSG00000000627	Sema4f	Sema W	sema domain, immunoglobulin domain (Ig), TM domain, and short cytoplasmic domain	protein-coding	-2.18308165884198	-2.15547475440471	-2.16382331017202	-2.1706810624505	-2.18114370519566	-2.15366558754311	-2.03057248461154	-2.16945352807143	0.759018020146679	0.829933115115583	1
Merged-chr9-21152865-4	chr9	21152744	21152944	+	900.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2938.0	NM_016742	12539.0	Mm.32331	NM_016742	ENSMUSG00000019471	Cdc37	p50|p50Cdc37	cell division cycle 37	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-164153024-4	chr1	164152924	164153124	+	999.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_037987)	promoter-TSS (NR_037987)	-807.0	NR_037987	100503816.0	Mm.398579	NR_037987	ENSMUSG00000086593	Gm16548	-	predicted gene 16548	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-45079381-3	chr19	45079287	45079487	+	851.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001362398)	TTS (NM_001362398)	3300.0	NM_001362397	107250.0	Mm.24417	NM_178929	ENSMUSG00000025213	Kazald1	AI842353|Bono1|IGFBP-rP10	Kazal-type serine peptidase inhibitor domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-95562204-7	chr9	95562008	95562208	+	740.285706	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_198414)	TTS (NM_198414)	2291.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-114622726-4	chr2	114622626	114622826	+	796.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025675, intron 3 of 8)	intron (NM_025675, intron 3 of 8)	32238.0	NM_001356438	66632.0	Mm.117809	NM_025675	ENSMUSG00000057147	Dph6	5730421E18Rik|Atpbd4	diphthamine biosynthesis 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-120612686-1	chr5	120612586	120612786	+	1000.0	f0_c57.idr	promoter-TSS (NM_028041)	promoter-TSS (NM_028041)	-97.0	NM_133908	100764.0	Mm.9654	NM_029096	ENSMUSG00000029600	Rita1	1110008J03Rik|AI853657|C86297|Rita	RBPJ interacting and tubulin associated 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101976168-4	chr15	101976068	101976268	+	997.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21881.0	NM_212487	332131.0	Mm.325105	NM_212487	ENSMUSG00000050463	Krt78	2310030B04Rik|Kb40	keratin 78	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-27436924-2	chr7	27436825	27437025	+	729.5	f0_balb.idr|f1_balb.idr	intron (NM_032610, intron 2 of 35)	intron (NM_032610, intron 2 of 35)	9664.0	NM_032610	80297.0	Mm.459123	NM_032610	ENSMUSG00000011751	Sptbn4	1700022P15Rik|5830426A08Rik|ROSA62|SpbIV|Spnb4|dyn|lnd|nmf261|nmf379|qv	spectrin beta, non-erythrocytic 4	protein-coding	3.0446831863884	2.65836507265651	2.68298254359402	1.29368290517689	3.96151258588154	3.30095458637227	1.89940356749309	1.30149678959669	0.800205144169882	0.59458607390717	0.970943251257357
Merged-chr10-80659295-2	chr10	80659195	80659395	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-2224.0	NM_145361	208198.0	Mm.60720	NM_145361	ENSMUSG00000003344	Btbd2	2610037C03Rik|4930512K17Rik	BTB (POZ) domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-104916635-1	chr10	104916535	104916735	+	571.0	f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	629366.0	NR_105838	102465222.0		NR_105838	ENSMUSG00000099264	Mir6411	Gm27767|mmu-mir-6411	microRNA 6411	ncRNA	0.0851861547491997	0.467100389502811	0.875616336688146	0.0931604716642752	0.0863744167726461	0.30762122809168	0.0993163397828829	0.535603387451379	-1.06754780076531	0.602281103740629	1
Merged-chr8-86757536-4	chr8	86757425	86757625	+	731.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11519.0	NM_009172	20437.0	Mm.324553	NM_009172	ENSMUSG00000036840	Siah1a	AA982064|AI853500|Sinh1a	siah E3 ubiquitin protein ligase 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-98779134-4	chr7	98779049	98779249	+	790.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55963.0	NM_001285794	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-24597550-4	chr5	24597450	24597650	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025891, intron 2 of 12)	intron (NM_025891, intron 2 of 12)	4452.0	NM_025891	66993.0	Mm.436539	NM_025891	ENSMUSG00000028949	Smarcd3	1500001J14Rik|2210409C08Rik|BAF60C	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115609105-2	chr11	115609005	115609205	+	610.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_027162, exon 4 of 5)	exon (NM_027162, exon 4 of 5)	3398.0	NM_027162	69674.0	Mm.390387	NM_027162	ENSMUSG00000020743	Mif4gd	1110014L05Rik|2310075G12Rik	MIF4G domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-149010924-2	chr6	149010824	149011024	+	936.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_177192, intron 14 of 20)	intron (NM_177192, intron 14 of 20)	-64454.0	NM_001361398	56306.0	Mm.18637	NM_019643	ENSMUSG00000039985	Fam60a	Ppcs1|Pptcs1|Sinhcaf|Tera	family with sequence similarity 60, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-47447592-2	chr19	47447492	47447692	+	850.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008018, intron 1 of 14)	L1MB8|LINE|L1	16819.0	NM_001164717	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-53312012-5	chr19	53311933	53312133	+	914.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360348, intron 1 of 5)	intron (NM_001360348, intron 1 of 5)	588.0	NM_001360348	17859.0	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122049950-2	chr5	122049850	122050050	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001312908)	promoter-TSS (NM_001312908)	-99.0	NM_001312908	13048.0	Mm.156172	NM_007804	ENSMUSG00000042589	Cux2	1700051K22Rik|Cutl2|Cux-2	cut-like homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97826682-4	chr11	97826611	97826811	+	968.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010688, intron 4 of 6)	intron (NM_010688, intron 4 of 6)	-14069.0	NM_001080935	68127.0	Mm.110270	NM_001080935	ENSMUSG00000050538	B230217C12Rik	AI840637	RIKEN cDNA B230217C12 gene	protein-coding	2.68632575820201	2.5239614491409	3.1424461068251	2.98561581119885	1.45072935557186	2.87518478064492	1.29325685536457	1.25522255374136	-1.94223437235418	0.0442343306065739	0.301995749135141
Merged-chr7-126399688-4	chr7	126399581	126399781	+	634.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2944.0	NM_010900	18020.0	Mm.1389	NM_010900	ENSMUSG00000030722	Nfatc2ip	D7Ertd304e|NIP45	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-62120480-3	chr14	62120381	62120581	+	853.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	172498.0	NM_173419	239133.0	Mm.127330	NM_173419	ENSMUSG00000048281	Dleu7	BC038059	deleted in lymphocytic leukemia, 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-53668402-2	chr17	53668301	53668501	+	945.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_151733, intron 16 of 16)	intron (NR_151733, intron 16 of 16)	20914.0	NM_028232	72415.0	Mm.153202	NM_028232	ENSMUSG00000023940	Sgo1	3300001M08Rik|C81037|Sgol1	shugoshin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28511227-4	chr17	28511097	28511297	+	852.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19664.0	NM_026290	67645.0	Mm.46170	NM_026290	ENSMUSG00000024223	Armc12	4930511I11Rik|AV041658	armadillo repeat containing 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44235012-4	chr9	44234900	44235100	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007619)	promoter-TSS (NM_007619)	-954.0	NM_007619	12402.0	Mm.266871	NM_007619	ENSMUSG00000034342	Cbl	4732447J05Rik|Cbl-2|c-Cbl|cbl	Casitas B-lineage lymphoma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-170365487-2	chr1	170365387	170365587	+	874.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001109985, intron 4 of 9)	intron (NM_001109985, intron 4 of 9)	56626.0	NM_001039593	76925.0	Mm.33631	NM_001039593	ENSMUSG00000042800	Spata46	1700015E13Rik	spermatogenesis associated 46	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-77526496-3	chr14	77526404	77526604	+	727.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253759, intron 7 of 19)	Lx6|LINE|L1	-19636.0	NR_033141	629678.0	Mm.390721	NM_001037935	ENSMUSG00000067973	Gm6994	EG629678	predicted gene 6994	ncRNA	2.39604713070869	2.35668343578238	2.14699485039055	2.61064432303603	2.0005631409202	2.23638450059747	1.38397480769214	2.7790504111945	-0.411614627388822	0.648038571859333	0.984971605872381
Merged-chr6-122600933-4	chr6	122600811	122601011	+	970.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001134391, intron 1 of 7)	intron (NM_001134391, intron 1 of 7)	1533.0	NM_031159	11810.0	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	3.42618393885069	3.23814221788094	3.32185346628882	3.53689739558492	2.42163941325725	3.26199186719475	3.91070452181817	3.33061616782706	-0.0870551180532142	0.884189425899877	0.998431161219273
Merged-chr8-77419180-2	chr8	77419080	77419280	+	655.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030113, intron 7 of 22)	B4A|SINE|B4	-97876.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4476988-2	chr19	4476888	4477088	+	694.5	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_134164, exon 1 of 8)	5' UTR (NM_134164, exon 1 of 8)	155.0	NM_134164	171180.0	Mm.262270	NM_134164	ENSMUSG00000049303	Syt12	-	synaptotagmin XII	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-6717749-4	chr10	6717675	6717875	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(A)n|Simple_repeat|Simple_repeat	-40818.0	NM_001302794	18390.0	Mm.438000	NM_011013	ENSMUSG00000000766	Oprm1	M-OR-1|MOP-R|MOR-1|MOR-1O|Oprm|mor|muOR	opioid receptor, mu 1	protein-coding	-1.50561175621786	-1.47331375025452	-1.02203377115094	-1.49110398925286	-1.50334449591826	-1.47119716082604	-1.48086985756939	-1.48966786617048	-2.07776723614574	0.550394407909386	1
Merged-chr7-16951469-4	chr7	16951371	16951571	+	971.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6789.0	NM_001099636	434128.0	Mm.483018	NM_001099636	ENSMUSG00000070802	Pnmal2	EG434128	PNMA-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-25023340-2	chr2	25023240	25023440	+	597.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146251, intron 20 of 34)	L1MDa|LINE|L1	-31039.0	NM_001177654	56876.0	Mm.42956	NM_020276	ENSMUSG00000006476	Nsmf	Jacob|Nelf	NMDA receptor synaptonuclear signaling and neuronal migration factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-117363273-4	chr5	117363155	117363355	+	942.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021539, intron 1 of 8)	intron (NM_021539, intron 1 of 8)	5950.0	NM_021539	59043.0	Mm.28489	NM_021539	ENSMUSG00000029364	Wsb2	AA673511|Swip2|WSB-2	WD repeat and SOCS box-containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-155087118-3	chr1	155087025	155087225	+	961.1333619999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3861.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-83706107-3	chr12	83705996	83706196	+	841.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362271, intron 3 of 11)	intron (NM_001362271, intron 3 of 11)	17533.0	NM_008943	19164.0	Mm.998	NM_008943	ENSMUSG00000019969	Psen1	Ad3h|PS-1|PS1|S182	presenilin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-115522704-4	chr8	115522606	115522806	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	184188.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-45583786-1	chr17	45583686	45583886	+	575.0	f0_c57.idr	Intergenic	B3|SINE|B2	8607.0	NM_022880	63959.0	Mm.29744	NM_022880	ENSMUSG00000023942	Slc29a1	1200014D21Rik|AA407560|ENT1	solute carrier family 29 (nucleoside transporters), member 1	protein-coding	-1.23826193677681	-1.21241040182355	-1.22270105026776	-0.934241458926562	-1.23783648736863	-1.21018037537722	-1.22037147302458	-0.929982742503718	0.0323590357436516	0.9924297640193	1
Merged-chr7-90150516-4	chr7	90150423	90150623	+	855.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360867, intron 1 of 19)	intron (NM_001360867, intron 1 of 19)	20310.0	NM_001252520	233489.0	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-13160094-2	chr8	13159994	13160194	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010684, intron 1 of 8)	intron (NM_010684, intron 1 of 8)	933.0	NM_010684	16783.0	Mm.16716	NM_010684	ENSMUSG00000031447	Lamp1	CD107a|LGP-120|LGP-A|Lamp-1|P2B|Perk	lysosomal-associated membrane protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-24713746-4	chr13	24713648	24713848	+	835.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029679, exon 17 of 23)	exon (NM_029679, exon 17 of 23)	48189.0	NM_020567	57441.0	Mm.12239	NM_020567	ENSMUSG00000006715	Gmnn	AW546347|Gem	geminin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-115624248-2	chr6	115624148	115624348	+	759.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029780, intron 10 of 16)	intron (NM_029780, intron 10 of 16)	22310.0	NM_023290	67027.0	Mm.101316	NM_023290	ENSMUSG00000000439	Mkrn2	2610002L04Rik|C81377	makorin, ring finger protein, 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-56133423-3	chr4	56133293	56133493	+	699.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-600918.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-50841889-3	chr15	50841801	50842001	+	881.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310481, intron 2 of 5)	intron (NM_001310481, intron 2 of 5)	47148.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-108759565-4	chr6	108759466	108759666	+	939.0166630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23493.0	NM_026011	67166.0	Mm.271178	NM_026011	ENSMUSG00000030105	Arl8b	2610313E07Rik|3100002J04Rik|Arl10c|gie1	ADP-ribosylation factor-like 8B	protein-coding	1.8084158173734	1.18546127048414	2.11204928454725	2.04736988653658	2.06406338670537	1.19255699361709	1.99127975083679	3.2054058998526	1.16148673200005	0.272254707202402	0.775631299106725
Merged-chr18-39085919-3	chr18	39085771	39085971	+	795.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361073, intron 1 of 21)	intron (NM_001361073, intron 1 of 21)	92726.0	NM_175164	71302.0	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-72547393-4	chr11	72547295	72547495	+	966.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029932, intron 1 of 11)	intron (NM_029932, intron 1 of 11)	2851.0	NM_029932	77577.0	Mm.46185	NM_029932	ENSMUSG00000020798	Spns3	9830002I17Rik	spinster homolog 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-72183998-4	chr8	72183908	72184108	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5660.0	NM_197944	209488.0	Mm.157431	NM_197944	ENSMUSG00000062007	Hsh2d	ALX|Hsh2	hematopoietic SH2 domain containing	protein-coding	4.03723054191133	3.67317491567555	3.79973435281178	4.45909794004766	3.91425778350344	3.95641935247808	4.10395431544211	4.15564340221876	0.000714694891098225	0.998718666259402	0.999479715059607
Merged-chr15-80445086-3	chr15	80445008	80445208	+	976.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6505.0	NR_155274	102633578.0	Mm.397484	NR_155274	ENSMUSG00000115888	Gm31369	-	predicted gene, 31369	ncRNA	4.95851995811225	4.07209097231124	4.40920180834033	5.29682370965399	3.84566130558679	3.33846341248498	2.38200641820251	3.61075956205126	-1.81712663033308	0.000281790496347589	0.00702407695674177
Merged-chr13-9178552-2	chr13	9178464	9178664	+	886.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	84683.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-106499561-2	chr8	106499461	106499661	+	594.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-11291.0	NM_007665	12560.0	Mm.4658	NM_007665	ENSMUSG00000061048	Cdh3	AI385538|Cadp|Cdhp|P-cadherin|Pcad	cadherin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-21987895-4	chr14	21987804	21988004	+	632.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_145459, exon 2 of 3)	5' UTR (NM_145459, exon 2 of 3)	1697.0	NM_145459	218820.0	Mm.292401	NM_145459	ENSMUSG00000039081	Zfp503	AI181838|B830002A16Rik|Nolz-1|Nolz1|Znf503	zinc finger protein 503	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-34507412-4	chr18	34507314	34507514	+	942.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146084)	promoter-TSS (NM_146084)	-591.0	NM_146084	225358.0	Mm.226899	NM_146084	ENSMUSG00000036501	Fam13b	2610024E20Rik|AW060714|AW546153	family with sequence similarity 13, member B	protein-coding	0.772286153030247	0.854666725544781	0.829002733150157	2.14148313847016	1.63901018876545	0.860296695349338	1.81002729522158	2.68768082047296	1.59732150001535	0.480760784759603	0.929150756370121
Merged-chr10-39774670-4	chr10	39774568	39774768	+	958.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011264, intron 1 of 31)	intron (NM_011264, intron 1 of 31)	42508.0	NM_011264	19714.0	Mm.439723	NM_011264	ENSMUSG00000019841	Rev3l	Rev|Rev3|Sez4	REV3 like, DNA directed polymerase zeta catalytic subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-165672693-4	chr1	165672586	165672786	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038846, intron 1 of 5)	MLTR11B|LTR|ERVK	35408.0	NM_001038846	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-7165269-2	chr19	7165169	7165369	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134147, intron 3 of 10)	CpG	41015.0	NM_134150	107260.0	Mm.203921	NM_134150	ENSMUSG00000024767	Otub1	AI850305	OTU domain, ubiquitin aldehyde binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-108906985-3	chr12	108906878	108907078	+	938.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177602, intron 2 of 6)	intron (NM_177602, intron 2 of 6)	12706.0	NM_177602	212198.0	Mm.342082	NM_177602	ENSMUSG00000040877	Wdr25	B930090D16Rik	WD repeat domain 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-144312778-4	chr1	144312696	144312896	+	902.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-63692.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117970054-4	chr11	117969950	117970150	+	914.7374880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007707)	promoter-TSS (NM_007707)	-684.0	NM_007707	12702.0	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55575862-2	chr14	55575762	55575962	+	686.583313	f1_balb.idr|f1_c57bl6.idr	exon (NM_026808, exon 1 of 2)	exon (NM_026808, exon 1 of 2)	188.0	NM_026808	68680.0	Mm.36758	NM_026808	ENSMUSG00000022215	Fitm1	1110028A07Rik|AV010547|Cg10671|Fit1	fat storage-inducing transmembrane protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-29734926-4	chr5	29734708	29734908	+	883.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_028426)	TTS (NR_028426)	-1090.0	NM_001359198	23950.0	Mm.290110	NM_011847	ENSMUSG00000029131	Dnajb6	HSJ-2|Mrj|mDj4	DnaJ heat shock protein family (Hsp40) member B6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-23135978-4	chr16	23135870	23136070	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-8240.0	NM_145480	106344.0	Mm.386835	NM_145480	ENSMUSG00000022881	Rfc4	A1|AI894123|AU040575|RFC37	replication factor C (activator 1) 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-134785100-4	chr1	134784984	134785184	+	986.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081307, intron 18 of 23)	intron (NM_001081307, intron 18 of 23)	18637.0	NR_015606	329251.0	Mm.188709	NM_001081307	ENSMUSG00000073557	Ppp1r12b	1810037O03Rik|9530009M10Rik|AI132431|Mypt2	protein phosphatase 1, regulatory (inhibitor) subunit 12B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-112507017-4	chr13	112506926	112507126	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010560)	TTS (NM_010560)	42956.0	NM_010560	16195.0	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30711062-2	chr2	30710962	30711162	+	777.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10148.0	NR_037272	100526499.0		NR_037272	ENSMUSG00000093091	Mir3089	mir-3089|mmu-mir-3089	microRNA 3089	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-96623403-4	chr10	96623316	96623516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_007569)	TTS (NM_007569)	6415.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-27923825-4	chr15	27923733	27923933	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081302, intron 1 of 56)	intron (NM_001081302, intron 1 of 56)	102015.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-31122049-2	chr17	31121949	31122149	+	900.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7562.0	NM_011575	21786.0	Mm.4641	NM_011575	ENSMUSG00000024029	Tff3	ITF|mITF	trefoil factor 3, intestinal	protein-coding	0.757471731644822	1.38561554533367	0.788835460486106	1.29111418743164	0.760446018522658	1.66147507616006	1.70138474220356	1.53779521835273	1.4658672442065	0.305188486692583	0.806677080350639
Merged-chr17-49423057-4	chr17	49422954	49423154	+	970.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5310.0	NM_028464	56738.0	Mm.22256	NM_020042	ENSMUSG00000064120	Mocs1	3110045D15Rik|AI043170|AW536397	molybdenum cofactor synthesis 1	protein-coding	3.06255102375755	4.08707597959897	3.68430463976879	3.50399080910614	3.34996904838648	3.91290765907046	2.87723211677784	4.55052895349436	0.288082952725643	0.613585429449445	0.977229820690413
Merged-chr1-82831996-3	chr1	82831901	82832101	+	902.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7459.0	NM_010472	15463.0	Mm.392569	NM_010472	ENSMUSG00000026159	Agfg1	AU045498|C130049H11Rik|C85612|D730048C23Rik|Hrb|RAB|Rip	ArfGAP with FG repeats 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-122670992-4	chr7	122670882	122671082	+	927.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019430)	promoter-TSS (NM_019430)	-762.0	NM_019430	54376.0	Mm.444212	NM_019430	ENSMUSG00000066189	Cacng3	-	calcium channel, voltage-dependent, gamma subunit 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-4871678-3	chr12	4871571	4871771	+	672.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033488, intron 1 of 13)	intron (NM_001033488, intron 1 of 13)	2688.0	NM_001033488	432628.0	Mm.154078	NM_001033488	ENSMUSG00000037336	Mfsd2b	Gm1964	major facilitator superfamily domain containing 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-144770648-5	chr5	144770514	144770714	+	780.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081362, intron 1 of 70)	ID_B1|SINE|B4	1822.0	NM_001081362	100683.0	Mm.273570	NM_001081362	ENSMUSG00000045482	Trrap	AI481500	transformation/transcription domain-associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139403345-2	chr5	139403245	139403445	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028469, intron 2 of 4)	intron (NM_028469, intron 2 of 4)	-3042.0	NM_177000	319772.0	Mm.440271	NM_177000	ENSMUSG00000044092	C130050O18Rik	-	RIKEN cDNA C130050O18 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-57659940-3	chr9	57659837	57660037	+	678.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6306.0	NM_001304761	12988.0	Mm.21974	NM_007783	ENSMUSG00000032312	Csk	AW212630|p50CSK	c-src tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-77773618-4	chr18	77773520	77773720	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007505)	promoter-TSS (NM_007505)	1.0	NM_001357533	225745.0	Mm.39293	NM_146089	ENSMUSG00000041840	Haus1	BC024400|Ccdc5|HEI-C	HAUS augmin-like complex, subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45923628-4	chr7	45923526	45923726	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2200.0	NM_010129	13732.0	Mm.20829	NM_010129	ENSMUSG00000040212	Emp3	H-4|H4|HNMP-1|MI-35|Ymp	epithelial membrane protein 3	protein-coding	6.12959598188905	6.23197649271491	6.38351343681561	6.02261515966956	6.01803247147629	5.67822257212955	6.32318666919632	6.59242025850282	0.00185913331188759	0.993819826167424	0.998431161219273
Merged-chr10-62197623-4	chr10	62197503	62197703	+	884.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197996, intron 3 of 7)	intron (NM_197996, intron 3 of 7)	-3376.0	NR_106122	102465767.0		NR_106122	ENSMUSG00000099185	Mir7662	Gm27876|mmu-mir-7662	microRNA 7662	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-38719946-2	chr9	38719846	38720046	+	716.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172767, intron 2 of 19)	intron (NM_172767, intron 2 of 19)	1678.0	NM_172767	67776.0	Mm.290950	NM_172767	ENSMUSG00000023186	Vwa5a	5830475I06Rik|AW552491|BCSC-1|E130119J22|Loh11cr2a	von Willebrand factor A domain containing 5A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-3221177-4	chr8	3221088	3221288	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001330056, intron 2 of 21)	CpG	58429.0	NM_010568	16337.0	Mm.268003	NM_010568	ENSMUSG00000005534	Insr	4932439J01Rik|CD220|D630014A15Rik|IR|IR-A|IR-B	insulin receptor	protein-coding	3.41176154138242	3.36380551376126	3.89812920182514	3.73081261072873	3.91034960583943	3.76414050537168	3.6432149912797	3.53397495497176	0.152596332240596	0.75828582834851	0.998431161219273
Merged-chr16-65469900-2	chr16	65469820	65470020	+	748.833374	f0_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-50709.0	NM_008849	18736.0	Mm.355440	NM_008849	ENSMUSG00000004842	Pou1f1	GHF-1|Hmp1|Pit-1|Pit1|Pit1-rs1|dw|dwarf	POU domain, class 1, transcription factor 1	protein-coding	3.02774100063536	2.30945197788845	1.00944976933161	2.14370702331618	1.19918721109557	3.2744839465487	1.01836498032952	0.982977050773119	-0.413191442643089	0.839969028762065	0.998431161219273
Merged-chr7-100198837-1	chr7	100198737	100198937	+	687.400024	f0_balb.idr	Intergenic	Lx6|LINE|L1	20154.0	NM_001190871	57442.0	Mm.282386	NM_020574	ENSMUSG00000035165	Kcne3	2210017H05Rik|MiRP2	potassium voltage-gated channel, Isk-related subfamily, gene 3	protein-coding	0.25256492045924	0.281054344979039	1.03289540667178	0.617855458280659	0.427498631643111	0.283112259516711	1.3269140843712	0.265927589185999	0.404601793283112	0.828247303655932	1
Merged-chr15-98532551-2	chr15	98532451	98532651	+	622.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153345, intron 2 of 10)	intron (NR_153345, intron 2 of 10)	1718.0	NM_001359827	69612.0	Mm.229107	NM_133714	ENSMUSG00000022992	Kansl2	2310037I24Rik|B930009D17	KAT8 regulatory NSL complex subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-62262694-2	chr10	62262594	62262794	+	853.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009314, intron 4 of 4)	intron (NM_009314, intron 4 of 4)	10256.0	NM_009314	21337.0	Mm.8054	NM_009314	ENSMUSG00000020081	Tacr2	Nk2r|Skr|Tac2r	tachykinin receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4306756-1	chr19	4306656	4306856	+	789.0	f1_balb.idr	promoter-TSS (NM_130863)	promoter-TSS (NM_130863)	-534.0	NM_001290818	110355.0	Mm.254144	NM_130863	ENSMUSG00000024858	Grk2	Adrbk-1|Adrbk1|Bark-1|beta ARK|betaARK1	G protein-coupled receptor kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-58976644-4	chr15	58976540	58976740	+	886.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144800, intron 3 of 14)	intron (NM_144800, intron 3 of 14)	42830.0	NM_023172	66218.0	Mm.322294	NM_023172	ENSMUSG00000022354	Ndufb9	1190008J14Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-90260317-1	chr9	90260217	90260417	+	668.0	f0_balb.idr	intron (NM_194334, intron 1 of 12)	intron (NM_194334, intron 1 of 12)	10452.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-79820416-2	chr7	79820316	79820516	+	637.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9689.0	NM_008589	17293.0	Mm.31472	NM_008589	ENSMUSG00000030543	Mesp2	bHLHc6	mesoderm posterior 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36669588-2	chr18	36669488	36669688	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025291, intron 2 of 4)	intron (NM_025291, intron 2 of 4)	723.0	NM_001164406	24068.0	Mm.29058	NM_025291	ENSMUSG00000006050	Sra1	AA959952|Sra|Srap|Straa1|Strra1	steroid receptor RNA activator 1	protein-coding	1.95223264014174	0.878817571614402	2.40683024318368	0.831299316767469	1.53866752537521	0.884592083677398	2.571887635444	0.835058705859242	-0.0472276278862465	0.984262808686786	0.998431161219273
Merged-chr7-100861440-2	chr7	100861334	100861534	+	546.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177073, intron 1 of 10)	intron (NM_177073, intron 1 of 10)	1979.0	NM_001358914	320100.0	Mm.40336	NM_177073	ENSMUSG00000008318	Relt	E430021K24Rik|Tnfrsf19l	RELT tumor necrosis factor receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-51219722-1	chr14	51219622	51219822	+	556.0	f1_c57bl6.idr	Intergenic	B3|SINE|B2	16027.0	NM_017389	503847.0	Mm.377124	NM_017389	ENSMUSG00000050766	Ear14	-	eosinophil-associated, ribonuclease A family, member 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-72835968-1	chr15	72835868	72836068	+	877.0	f1_c57bl6.idr	intron (NM_001164641, intron 17 of 17)	MTE2b|LTR|ERVL-MaLR	-25644.0	NR_002864	353342.0	Mm.440245	NR_002864	ENSMUSG00000106847	Peg13	-	paternally expressed 13	ncRNA	0.801476371508558	1.05803113585537	1.12938622399095	1.08752892497678	0.522913184602987	0.550134412556967	0.541331484138694	1.09490695425947	-1.73689271290583	0.288237805727789	1
Merged-chr1-40295036-4	chr1	40294937	40295137	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001123382, intron 5 of 10)	intron (NM_001123382, intron 5 of 10)	28451.0	NM_001123382	16177.0	Mm.896	NM_008362	ENSMUSG00000026072	Il1r1	CD121a|CD121b|IL-1R1|IL-iR|Il1r-1	interleukin 1 receptor, type I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98938236-4	chr11	98938119	98938319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009024, intron 1 of 8)	intron (NM_009024, intron 1 of 8)	501.0	NM_001177302	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132969537-4	chr4	132969472	132969672	+	881.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-4523.0	NM_010208	14191.0	Mm.271665	NM_010208	ENSMUSG00000028874	Fgr	-	FGR proto-oncogene, Src family tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71483959-3	chr17	71483858	71484058	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-8615.0	NM_028887	74355.0	Mm.194450	NM_028887	ENSMUSG00000024054	Smchd1	4931400A14Rik|AW554188|MommeD1|mKIAA0650	SMC hinge domain containing 1	protein-coding	5.42832405326246	5.31774766638253	5.25387382138279	5.12816623143899	3.40092784550151	3.85592337183104	3.15217513600748	3.39678179649782	-2.32112032620541	2.51161887073168e-09	3.7050495751277e-07
Merged-chr4-53155687-4	chr4	53155580	53155780	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 1 of 49)	intron (NM_013454, intron 1 of 49)	4215.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-25646302-4	chr14	25646218	25646418	+	980.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310666, intron 10 of 23)	intron (NM_001310666, intron 10 of 23)	42805.0	NM_001309430	100188919.0	Mm.473810	NM_001309430		Gm45915	Israa	predicted gene, 45915	protein-coding	4.06130925772953	3.08384720045514	3.79262171210366	3.21713331768344	3.87058686630893	3.45231612460833	3.12305536665759	3.7090857668126	-0.0550246939462466	0.919685677806004	0.998431161219273
Merged-chr7-90038394-2	chr7	90038285	90038485	+	674.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_110365, intron 3 of 5)	MTEa|LTR|ERVL-MaLR	9226.0	NR_110364	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	-0.341184992582329	-0.325269734218016	-0.330455348626801	-0.33447490912043	-0.340183812607748	0.459662020394668	0.292825004656492	-0.333771504530607	3.83990349158385	0.127851951768966	1
Merged-chr10-80111890-1	chr10	80111790	80111990	+	565.5	f1_balb.idr	intron (NR_038088, intron 1 of 4)	B2_Mm1t|SINE|B2	-3913.0	NM_001301853	20869.0	Mm.44231	NM_011492	ENSMUSG00000003068	Stk11	AA408040|Lkb1|Par-4|R75140	serine/threonine kinase 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-32528266-4	chr6	32528172	32528372	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175750, intron 1 of 31)	intron (NM_175750, intron 1 of 31)	17131.0	NR_040277	319849.0	Mm.440860	NR_040277	ENSMUSG00000086763	Plxna4os1	B230378P21Rik	plexin A4, opposite strand 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-80057681-4	chr12	80057591	80057791	+	987.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55322.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5462368-2	chr19	5462268	5462468	+	712.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021438, intron 3 of 9)	B1_Mus2|SINE|Alu	1761.0	NM_021438	58249.0	Mm.329656	NM_021438	ENSMUSG00000024911	Fibp	2010004G08Rik|2010005N21Rik|3010027N18Rik	fibroblast growth factor (acidic) intracellular binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-38610351-3	chr6	38610253	38610453	+	867.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_138680)	TTS (NM_138680)	26886.0	NM_001033171	74253.0	Mm.121859	NM_001033171	ENSMUSG00000071537	Klrg2	2310020F24Rik	killer cell lectin-like receptor subfamily G, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-173740321-2	chr1	173740220	173740420	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001204910, intron 1 of 7)	B1_Mus1|SINE|Alu	1489.0	NM_001204910	226691.0	Mm.440876	NM_001204910	ENSMUSG00000073490	Ifi207	AI607873|Pyhin-A|pyhinA	interferon activated gene 207	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-60855281-3	chr15	60855184	60855384	+	803.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30204.0	NM_001162926	399603.0	Mm.411968	NM_207269	ENSMUSG00000072568	Fam84b	BF642811|D330050I23Rik	family with sequence similarity 84, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-7398465-4	chr17	7398393	7398593	+	995.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13188.0	NM_001142539	667055.0	Mm.327371	NM_001142539	ENSMUSG00000056133	Gm9992	-	predicted gene 9992	protein-coding	0.15663719007031	0.179425724708673	0.987603483267522	0.741734820479723	0.158075778892306	0.181088093060346	0.795603448512844	0.167272735135853	-1.23901753452227	0.553656075782471	1
Merged-chr11-69664021-4	chr11	69663903	69664103	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001291058)	TTS (NM_001291058)	960.0	NR_035455	100316840.0		NR_035455	ENSMUSG00000088752	Mir1934	mir-1934|mmu-mir-1934	microRNA 1934	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-169918620-3	chr2	169918500	169918700	+	954.944458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER20C_Mm|LTR|ERVK	44587.0	NR_131974	446211.0	Mm.266854	NR_131974	ENSMUSG00000103935	AY702102	STDP1	cDNA sequence AY702102	ncRNA	2.64193080643421	2.17230918739662	2.62899170068458	2.02115619674774	0.938813233863934	1.03330518114339	1.27701794003947	0.978054165058162	-4.96138283749304	0.000167257052086626	0.00468137661960033
Merged-chr2-153146388-2	chr2	153146288	153146488	+	695.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001172117, intron 11 of 12)	intron (NM_001172117, intron 11 of 12)	-14913.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-144320214-4	chr1	144320125	144320325	+	956.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-71121.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133911086-4	chr4	133910978	133911178	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-23281.0	NM_009097	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	6.30711799576423	6.17427397748285	6.37133712983322	6.26433257554287	6.02129737498137	6.10169571694006	6.6583917306543	5.82950155808885	-0.105832114427956	0.648086217428695	0.984971605872381
Merged-chr13-12359462-2	chr13	12359362	12359562	+	583.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18730.0	NM_033268	11472.0	Mm.37638	NM_033268	ENSMUSG00000052374	Actn2	1110008F24Rik	actinin alpha 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-96406756-4	chr7	96406649	96406849	+	853.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011858, intron 2 of 32)	intron (NM_011858, intron 2 of 32)	-64785.0	NR_046043	670727.0	Mm.421352	NR_046043	ENSMUSG00000085751	Gm15412	-	predicted gene 15412	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27343443-2	chr2	27343343	27343543	+	628.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_133905, intron 1 of 29)	intron (NR_133905, intron 1 of 29)	84165.0	NR_133905	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59263666-3	chr15	59263539	59263739	+	936.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43309.0	NR_045613	100416830.0	Mm.490788	NR_045613	ENSMUSG00000098528	Zfp572	4930472F24Rik	zinc finger protein 572	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-29787637-4	chr2	29787524	29787724	+	997.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290496)	promoter-TSS (NM_001290496)	47.0	NM_001290496	227682.0	Mm.245739	NM_145520	ENSMUSG00000039826	Trub2	G430055L02Rik	TruB pseudouridine (psi) synthase family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-74935439-2	chr8	74935339	74935539	+	777.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58211.0	NM_001316753	70823.0	Mm.261739	NM_178017	ENSMUSG00000034518	Hmgxb4	4733401K04Rik|AI316803|Hmgb2l1	HMG box domain containing 4	protein-coding	1.16058755264107	1.59504461184958	1.53506821407455	0.855331592839992	1.30129201807295	1.93757904287183	1.41618920682057	0.857396932814227	0.435663296917147	0.739378905457828	0.998431161219273
Merged-chr10-80824930-2	chr10	80824830	80825030	+	942.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-1726.0	NM_001301034	18245.0	Mm.398119	NM_008753	ENSMUSG00000035242	Oaz1	AZ-1|AZ1|Antizyme|ODC-Az|Oaz	ornithine decarboxylase antizyme 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-34801715-4	chr1	34801605	34801805	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183019)	promoter-TSS (NM_183019)	-17.0	NM_183019	226970.0	Mm.41604	NM_183019	ENSMUSG00000037509	Arhgef4	9330140K16Rik|Asef	Rho guanine nucleotide exchange factor (GEF) 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-105877654-4	chr3	105877552	105877752	+	977.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027025, intron 1 of 6)	L1MEc|LINE|L1	6794.0	NM_001174169	69296.0	Mm.235024	NM_027025	ENSMUSG00000000562	Tmigd3	1700001d09rik|4930578J19Rik|Tg(H2-K-CALR*)del52Shmd	transmembrane and immunoglobulin domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-59203569-2	chr2	59203469	59203669	+	935.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 1 of 20)	intron (NM_175464, intron 1 of 20)	42719.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-29429002-4	chr11	29428902	29429102	+	991.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176841, intron 5 of 31)	MIRb|SINE|MIR	54830.0	NM_176841	108686.0	Mm.338284	NM_176841	ENSMUSG00000032740	Ccdc88a	A430106J12Rik|AI848406|Ape|C130096N06Rik|C330012F17Rik|D130005J21Rik|Girdin|Giv|Grdn|Hkrp1	coiled coil domain containing 88A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-119781156-2	chr8	119781056	119781256	+	738.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2740.0	NM_028883	74347.0	Mm.358759	NM_028883	ENSMUSG00000034105	Tldc1	4632415K11Rik|Kiaa1609	TBC/LysM associated domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-89444411-4	chr10	89444309	89444509	+	986.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001284344)	promoter-TSS (NM_001284344)	-442.0	NM_001033331	237436.0	Mm.11982	NM_001033331	ENSMUSG00000074802	Gas2l3	8430435B07Rik|Gm240	growth arrest-specific 2 like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55878606-2	chr14	55878506	55878706	+	728.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_019820)	TTS (NM_019820)	5650.0	NM_019820	56410.0	Mm.97163	NM_019820	ENSMUSG00000040380	Cbln3	-	cerebellin 3 precursor protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122618108-4	chr8	122617967	122618167	+	814.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4308.0	NR_105821	102466643.0		NR_105821	ENSMUSG00000098500	Mir6396	Gm27938|mmu-mir-6396	microRNA 6396	ncRNA	1.99368603024761	1.89647195673003	2.15099402743862	2.75303512634812	2.4931481694678	2.37199588399364	2.16697552986377	2.10394124580217	0.0968288696995596	0.909633412583997	0.998431161219273
Merged-chr4-120731238-2	chr4	120731138	120731338	+	586.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081142, intron 1 of 13)	CpG	15938.0	NM_001081142	60613.0	Mm.249977	NM_001081142	ENSMUSG00000028631	Kcnq4	-	potassium voltage-gated channel, subfamily Q, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-21010246-2	chr11	21010146	21010346	+	626.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-81078.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-194995395-4	chr1	194995302	194995502	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18443.0	NR_033564	320400.0	Mm.417608	NR_033564	ENSMUSG00000097325	Gm16897	C030002c11rik	predicted gene, 16897	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-73195847-2	chr14	73195747	73195947	+	669.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009029, exon 27 of 27)	3' UTR (NM_009029, exon 27 of 27)	11004.0	NR_030459	751541.0		NR_030459	ENSMUSG00000076121	Mir687	Mirn687|mir-687|mmu-mir-687	microRNA 687	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-120822362-2	chr6	120822277	120822477	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_007510, intron 1 of 8)	intron (NM_007510, intron 1 of 8)	321.0	NM_007510	11973.0	Mm.29045	NM_007510	ENSMUSG00000019210	Atp6v1e1	2410029D23Rik|Atp6e|Atp6e2|Atp6v1e|D6Ertd385e|Vma4|p31	ATPase, H+ transporting, lysosomal V1 subunit E1	protein-coding	-0.884151943040017	-0.86624766296593	-0.874346483115882	-0.877999885265216	-0.883229761593409	-0.862865047594633	0.225856448367219	-0.877358843395171	3.5762970005776	0.2292649794022	1
Merged-chr18-24020857-4	chr18	24020791	24020991	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021559)	promoter-TSS (NM_021559)	-78.0	NM_021559	59057.0	Mm.417427	NM_021559	ENSMUSG00000051469	Zfp24	3526401F17Rik|5033419P20Rik|AI480505|AI642085|AL024422|KOX17|ZF-12|Zfp191|Znf24	zinc finger protein 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-24677814-3	chr1	24677753	24677953	+	815.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026719)	promoter-TSS (NM_026719)	-691.0	NM_026719	68421.0	Mm.336563	NM_026719	ENSMUSG00000073725	Lmbrd1	0910001K20Rik|AV347960	LMBR1 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-78632073-3	chr9	78631950	78632150	+	914.2000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153098, intron 2 of 32)	intron (NM_153098, intron 2 of 32)	16504.0	NM_153098	235505.0	Mm.32955	NM_153098	ENSMUSG00000046186	Cd109	9930012E15Rik|AI480638|GARP	CD109 antigen	protein-coding	1.04184335964971	0.658785261311015	1.47218374088051	0.639958384707955	1.25576961638237	1.33449747684134	0.650539879903127	0.980099452427606	0.324250659326784	0.833581629550612	0.998431161219273
Merged-chr16-11460425-4	chr16	11460334	11460534	+	873.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028964, intron 13 of 20)	intron (NM_028964, intron 13 of 20)	54786.0	NM_001290148	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-25804236-2	chr15	25804136	25804336	+	738.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001353142, intron 14 of 20)	intron (NM_001353142, intron 14 of 20)	30223.0	NM_001353141	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131679200-2	chr1	131679131	131679331	+	794.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-9464.0	NM_001311096	226421.0	Mm.44508	NM_145509	ENSMUSG00000052688	Rab7b	5430435G22Rik	RAB7B, member RAS oncogene family	protein-coding	2.45825423765186	1.92027845943977	3.25935088086315	2.13333738673008	2.47920932592127	2.78636770380218	1.38531282990881	2.27945421515912	-0.47752901453632	0.595454110973116	0.971139446851758
Merged-chr6-99391481-2	chr6	99391381	99391581	+	621.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_053202, intron 1 of 18)	intron (NM_053202, intron 1 of 18)	43864.0	NM_053202	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-73324855-7	chr14	73324761	73324961	+	906.285706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009029, intron 1 of 26)	intron (NM_009029, intron 1 of 26)	961.0	NM_009029	19645.0	Mm.273862	NM_009029	ENSMUSG00000022105	Rb1	Rb|Rb-1|pRb|pp105	RB transcriptional corepressor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-65646150-2	chr7	65646050	65646250	+	791.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172310, intron 1 of 18)	intron (NM_172310, intron 1 of 18)	1252.0	NM_172310	272396.0	Mm.35127	NM_172310	ENSMUSG00000030515	Tarsl2	A530046H20Rik	threonyl-tRNA synthetase-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-31609627-2	chr5	31609527	31609727	+	619.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER5A1|DNA|hAT-Charlie	-4324.0	NM_025796	66845.0	Mm.120763	NM_025796	ENSMUSG00000106918	Mrpl33	0610009M10Rik|L33mt|MRP-L33	mitochondrial ribosomal protein L33	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-94436386-1	chr8	94436286	94436486	+	543.0	f1_balb.idr	Intergenic	Intergenic	-1283.0	NR_015514	320377.0	Mm.486022	NR_015514		9330175E14Rik	A630085K21	RIKEN cDNA 9330175E14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-88272947-1	chr1	88272847	88273047	+	546.0	f0_balb.idr	intron (NM_198652, intron 3 of 7)	intron (NM_198652, intron 3 of 7)	-3539.0	NR_040291	78605.0	Mm.384762	NR_040291		6430706D22Rik	-	RIKEN cDNA 6430706D22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-33386277-4	chr8	33386212	33386412	+	857.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001098233)	promoter-TSS (NM_001098233)	-13.0	NM_152821	75029.0	Mm.159402	NM_152821	ENSMUSG00000049184	Purg	4930486B15Rik	purine-rich element binding protein G	protein-coding	1.7274854606141	0.705919615306259	0.689736109484051	1.99020483328411	1.49573432860037	1.16605785986462	0.693343304183008	0.679195997987317	-1.25249991666744	0.4187026214811	0.898591877339902
Merged-chr11-120596980-2	chr11	120596880	120597080	+	949.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011568, intron 2 of 5)	intron (NM_011568, intron 2 of 5)	1385.0	NM_011568	21681.0	Mm.1886	NM_011568	ENSMUSG00000025134	Alyref	Aly|Ref1|Ref1-I|Refbp1|Tho4|Thoc4	Aly/REF export factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-75703965-4	chr2	75703916	75704116	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132727, intron 1 of 1)	CpG	647.0	NR_132727	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	4.16001138694706	2.92254561295607	3.99216649466826	1.96204627535433	3.46871730752406	3.72916117445294	4.50503847749498	3.5714783769058	0.505988359782413	0.426459431884379	0.902023751857747
Merged-chr6-148993967-3	chr6	148993867	148994067	+	611.583313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177192, intron 20 of 20)	intron (NM_177192, intron 20 of 20)	-47497.0	NM_001361398	56306.0	Mm.18637	NM_019643	ENSMUSG00000039985	Fam60a	Ppcs1|Pptcs1|Sinhcaf|Tera	family with sequence similarity 60, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-110801298-2	chr7	110801198	110801398	+	579.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009667, intron 7 of 14)	B3A|SINE|B2	28694.0	NM_009667	11717.0	Mm.3238	NM_009667	ENSMUSG00000005686	Ampd3	-	adenosine monophosphate deaminase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135351896-3	chr4	135351833	135352033	+	778.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016799, intron 1 of 17)	ID4|SINE|ID	1281.0	NM_016799	51796.0	Mm.1963	NM_016799	ENSMUSG00000028809	Srrm1	AA407769|POP101|Srm160	serine/arginine repetitive matrix 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-54686004-2	chr13	54685904	54686104	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_027396, intron 1 of 10)	MIRb|SINE|MIR	1804.0	NM_001146025	105239.0	Mm.25366	NM_134064	ENSMUSG00000034928	Rnf44	AI854545|mKIAA1100	ring finger protein 44	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128340497-4	chr10	128340401	128340601	+	841.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026444, intron 1 of 10)	B1_Mur4|SINE|Alu	2774.0	NM_026444	12974.0	Mm.58836	NM_026444	ENSMUSG00000005683	Cs	2610511A05Rik|9030605P22Rik|Ahl4|BB234005|Cis	citrate synthase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-82858700-2	chr7	82858600	82858800	+	765.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8633.0	NM_175366	108797.0	Mm.306789	NM_175366	ENSMUSG00000057706	Mex3b	4931439A04Rik|M-04814|Rkhd3|mKIAA2009	mex3 RNA binding family member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-14881573-4	chr3	14881475	14881675	+	985.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER44D|DNA|TcMar-Tigger	-4694.0	NM_001357334	12349.0	Mm.1186	NM_009801	ENSMUSG00000027562	Car2	AI131712|CAII|Ca2|Car-2|Ltw-5|Lvtw-5	carbonic anhydrase 2	protein-coding	3.38527323501924	3.80574239737703	4.31181019903407	4.33992740771352	3.33244896919985	4.66544704481216	3.52996240912715	3.59189801089499	-0.179331030249301	0.730614901899485	0.998431161219273
Merged-chr3-95637392-4	chr3	95637353	95637553	+	907.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	12473.0	NM_001026212	56205.0	Mm.241365	NM_019561	ENSMUSG00000038619	Ensa	1700020C18Rik|2610007F17Rik|AI451924	endosulfine alpha	protein-coding	-0.186187577975837	-0.17135457769599	-0.176213331804687	0.354655928680711	0.543308135034508	-0.17025939620986	-0.175141655517548	-0.0117137665555338	0.824437420847603	0.728588370559902	1
Merged-chr14-103843889-5	chr14	103843721	103843921	+	916.286682	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007904)	promoter-TSS (NM_007904)	-120.0	NM_001276296	13618.0	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-101520137-3	chr14	101520003	101520203	+	784.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081278, intron 1 of 18)	intron (NM_001081278, intron 1 of 18)	89088.0	NM_001081278	210789.0	Mm.320639	NM_173380	ENSMUSG00000033083	Tbc1d4	5930406J04Rik|A930035N22|AV295684|As160	TBC1 domain family, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-100726798-2	chr12	100726698	100726898	+	608.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1678.0	NM_153587	73086.0	Mm.220417	NM_153587	ENSMUSG00000021180	Rps6ka5	3110005L17Rik|6330404E13Rik|AI854034|MSK1|MSPK1|RLPK|RLSK|S6K-alpha-5	ribosomal protein S6 kinase, polypeptide 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-13858466-2	chr17	13858366	13858566	+	816.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_151731, intron 20 of 33)	Lx|LINE|L1	-89907.0	NM_001122977	635895.0	Mm.388844	NM_001122977	ENSMUSG00000067941	Gm7168	EG635895	predicted gene 7168	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-157079289-4	chr2	157079182	157079382	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164663)	promoter-TSS (NM_001164663)	-17.0	NM_001164663	320706.0	Mm.79466	NM_001164663	ENSMUSG00000055485	Soga1	9830001H06Rik|AI426038|D430036N24Rik|Soga	suppressor of glucose, autophagy associated 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-32165761-5	chr14	32165694	32165894	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019744)	promoter-TSS (NM_019744)	5.0	NM_019744	27057.0	Mm.371598	NM_019744	ENSMUSG00000056234	Ncoa4	ARA70|Rfg	nuclear receptor coactivator 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-53394819-4	chr19	53394735	53394935	+	997.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	-4201.0	NM_172429	76479.0	Mm.313687	NM_172429	ENSMUSG00000025024	Smndc1	-	survival motor neuron domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-121815182-5	chr3	121815100	121815300	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355756)	promoter-TSS (NM_001355756)	102.0	NM_008991	19299.0	Mm.399042	NM_008991	ENSMUSG00000028127	Abcd3	AI313901|AU018866|AW146054|PMP68|PMP70|Pxmp1	ATP-binding cassette, sub-family D (ALD), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-133661415-4	chr1	133661261	133661461	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166552)	promoter-TSS (NM_001166552)	38.0	NM_144530	70579.0	Mm.245357	NM_144530	ENSMUSG00000102976	Zc3h11a	1110003F06Rik|5730454B08Rik|G630041M05Rik|Zc3hdc11a|Zc3hh11a|mKIAA0663	zinc finger CCCH type containing 11A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127340098-3	chr10	127339987	127340187	+	710.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010296, intron 2 of 12)	intron (NM_010296, intron 2 of 12)	1492.0	NM_010296	14632.0	Mm.391450	NM_010296	ENSMUSG00000025407	Gli1	AV235269|Zfp-5|Zfp5	GLI-Kruppel family member GLI1	protein-coding	1.8449958024237	1.97249471430753	1.63946854232078	1.04271064882044	1.52502610129119	1.9881253672763	2.22078297158464	1.04567592155786	0.304421110215212	0.795739914247607	0.998431161219273
Merged-chr19-7057298-2	chr19	7057198	7057398	+	922.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_134147, intron 1 of 10)	intron (NM_134147, intron 1 of 10)	530.0	NM_134147	107227.0	Mm.439977	NM_134147	ENSMUSG00000036278	Macrod1	AI604841|AW743046|D930010J01Rik|Lrp16	MACRO domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-95162477-4	chr4	95162380	95162580	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-110258.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-142057024-4	chr7	142056941	142057141	+	820.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357705, intron 1 of 4)	intron (NM_001357705, intron 1 of 4)	3812.0	NM_001347560	101513.0	Mm.53259	NM_028308	ENSMUSG00000025147	Mob2	1110017M21Rik|2700078K21Rik|AI256456|Mmh	MOB kinase activator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-35821661-1	chr12	35821561	35821761	+	547.0	f1_c57bl6.idr	Intergenic	Lx3C|LINE|L1	-103960.0	NM_207531	403205.0	Mm.190508	NM_207531	ENSMUSG00000036231	Agr3	BCMP11|E030025L21Rik|Gm888	anterior gradient 3	protein-coding	-1.20406370813143	-1.56956373024278	-1.57884638916872	-1.58647144159385	-1.598104728449	-1.56755213932999	-1.57674499865798	-1.58510656085539	-1.70745470802464	0.626337835847419	1
Merged-chr15-27680782-4	chr15	27680689	27680889	+	988.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198301, intron 1 of 6)	intron (NM_198301, intron 1 of 6)	753.0	NM_001242424	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-109202167-4	chr4	109202052	109202252	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_133885, exon 1 of 23)	exon (NM_133885, exon 1 of 23)	120.0	NM_133885	100273.0	Mm.366315	NM_133885	ENSMUSG00000028559	Osbpl9	2600011I06Rik|AU015843|Orp-9	oxysterol binding protein-like 9	protein-coding	1.73504206902931	1.95719591226793	1.06516264227806	1.93597764232838	2.16641088387008	1.08957425639255	1.78134205204052	1.44263473293089	-0.0861411695318244	0.941622512233411	0.998431161219273
Merged-chr13-58074992-4	chr13	58074895	58075095	+	869.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195075, intron 5 of 16)	L1M2|LINE|L1	27433.0	NM_001195075	100503085.0	Mm.379256	NM_001195075	ENSMUSG00000014164	Klhl3	7530408C15Rik|AI430941|EG627648	kelch-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46850005-2	chr8	46849905	46850105	+	585.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	110260.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-62977862-4	chr18	62977814	62978014	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028017)	promoter-TSS (NM_028017)	-2.0	NM_028017	108123.0	Mm.292687	NM_028017	ENSMUSG00000024581	Napg	2400003O04Rik|SNARE	N-ethylmaleimide sensitive fusion protein attachment protein gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-93375748-1	chr10	93375648	93375848	+	600.0	f1_c57bl6.idr	Intergenic	Intergenic	39537.0	NR_038014	432488.0	Mm.32833	NR_038014		Gm17745	Gm3546	predicted gene, 17745	ncRNA	-0.0601196798084891	0.151519516794079	-0.049088671789556	-0.0532329519150074	-0.0590946455005458	0.585450294553257	0.535052095499834	0.115924465556149	3.07830222687586	0.151823058315115	1
Merged-chr10-105840328-2	chr10	105840228	105840428	+	867.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359640, intron 1 of 12)	intron (NM_001359640, intron 1 of 12)	1052.0	NM_001359642	216292.0	Mm.250875	NM_207522	ENSMUSG00000036009	Mettl25	-	methyltransferase like 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180427347-2	chr1	180427247	180427447	+	772.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56157.0	NM_001081227	381310.0	Mm.44791	NM_001081227	ENSMUSG00000053963	Stum	6330403A02Rik|Gm10001|R75555	mechanosensory transduction mediator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-96210097-2	chr16	96209997	96210197	+	599.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_015825, intron 2 of 7)	RMER19B|LTR|ERVK	9627.0	NM_015825	50795.0	Mm.28638	NM_015825	ENSMUSG00000040666	Sh3bgr	5430437A18Rik	SH3-binding domain glutamic acid-rich protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-3471572-3	chr2	3471478	3471678	+	721.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027509, intron 1 of 4)	PB1D11|SINE|Alu	3408.0	NM_022724	64707.0	Mm.23483	NM_022724	ENSMUSG00000026646	Suv39h2	4930507K23Rik|AA536750|D030054H19Rik|D2Ertd544e|KMT1B	suppressor of variegation 3-9 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46893667-2	chr8	46893567	46893767	+	661.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-93220.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-95372102-4	chr10	95372009	95372209	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35833.0	NR_045337	69629.0	Mm.250542	NR_045337	ENSMUSG00000100550	2310039L15Rik	A53T-syn|G2-3|PrPsynA53T|Tg(Prnp-SNCA*A53T)23Mkle	RIKEN cDNA 2310039L15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-23741010-2	chr17	23740874	23741074	+	980.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023824)	promoter-TSS (NM_023824)	-644.0	NM_023824	76498.0	Mm.491253	NM_023824	ENSMUSG00000023909	Paqr4	1500004C10Rik	progestin and adipoQ receptor family member IV	protein-coding	-0.147570505718525	-0.137524556844399	-0.140858788804615	0.216736628434179	0.258315832554592	0.030205789574465	-0.140127001531806	0.117397801128647	1.16976280016306	0.606154532563114	1
Merged-chr1-51907891-4	chr1	51907790	51907990	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010863, intron 1 of 29)	intron (NM_010863, intron 1 of 29)	8088.0	NM_001161817	17912.0	Mm.3390	NM_010863	ENSMUSG00000018417	Myo1b	AA406997|MIH-L|MMIa	myosin IB	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32501638-2	chr2	32501538	32501738	+	916.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33721.0	NM_153560	98952.0	Mm.4065	NM_153560	ENSMUSG00000039157	Fam102a	AI426465|C230093N12Rik|Eeig1	family with sequence similarity 102, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-29147272-3	chr11	29147175	29147375	+	716.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027869, intron 15 of 27)	(TG)n|Simple_repeat|Simple_repeat	16524.0	NM_027869	71701.0	Mm.211131	NM_027869	ENSMUSG00000020464	Pnpt1	1200003F12Rik|Old35|PNPase|Pnptl1	polyribonucleotide nucleotidyltransferase 1	protein-coding	0.0961632153553531	0.5660427530095	-0.03115720997112	0.374881069559915	0.32803731104994	-0.0251648409841484	-0.0300799737367496	-0.0342640085002592	-1.68636089250097	0.43611434998279	1
Merged-chr9-107628148-2	chr9	107628041	107628241	+	973.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_008138, intron 1 of 8)	intron (NM_008138, intron 1 of 8)	7201.0	NM_008138	14678.0	Mm.196464	NM_008138	ENSMUSG00000032562	Gnai2	C76432|Galphai2|Gia|Gnai-2	guanine nucleotide binding protein (G protein), alpha inhibiting 2	protein-coding	2.55899959922814	1.93015265161527	3.33567616542252	1.8133658983457	2.04887868454512	1.9443003157065	2.96946108358505	2.29181304120857	-0.387784904215482	0.656641826495213	0.988505467120973
Merged-chr3-79678814-2	chr3	79678714	79678914	+	887.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_212452, intron 4 of 17)	intron (NM_212452, intron 4 of 17)	49735.0	NM_029482	75939.0	Mm.221520	NM_029482	ENSMUSG00000027811	4930579G24Rik	-	RIKEN cDNA 4930579G24 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-73424730-2	chr7	73424630	73424830	+	832.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48956.0	NR_040324	319783.0	Mm.349813	NR_040324	ENSMUSG00000097756	A730056A06Rik	C76391	RIKEN cDNA A730056A06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-6514971-4	chr4	6514874	6515074	+	787.049988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60703.0	NM_010945	18201.0	Mm.3059	NM_010945	ENSMUSG00000028245	Nsmaf	AA959567|C630007J05|Fan	neutral sphingomyelinase (N-SMase) activation associated factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-64894969-3	chr17	64894878	64895078	+	776.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58907.0	NM_030031	78057.0	Mm.109380	NM_030031	ENSMUSG00000024088	4930583I09Rik	-	RIKEN cDNA 4930583I09 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126488656-2	chr7	126488556	126488756	+	762.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001163713, exon 4 of 9)	exon (NM_001163713, exon 4 of 9)	1301.0	NM_001163713	233870.0	Mm.197829	NM_172745	ENSMUSG00000073838	Tufm	2300002G02Rik|C76308|C76389|EF-TuMT|EFTU	Tu translation elongation factor, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105698125-2	chr8	105698025	105698225	+	723.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001348349)	TTS (NM_001348349)	-3023.0	NM_001047436	56513.0	Mm.472753	NM_019695	ENSMUSG00000005699	Pard6a	0710008C04Rik|2610010A15Rik|PAR-6A|PAR6alpha|Par-6|Par6|Par6c|TAX40|Tip-40	par-6 family cell polarity regulator alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-98691030-3	chr7	98690930	98691130	+	830.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_144495, exon 1 of 1)	non-coding (NR_144495, exon 1 of 1)	11898.0	NR_144495	100040769.0	Mm.126401	NR_144495		Gm15506	-	predicted gene 15506	ncRNA	1.07501675755919	1.47255481549115	2.74295327414569	2.88610365700376	1.08547637887534	1.8638149093064	0.902147569996086	0.874097754805268	-2.69825481768828	0.0265629092209683	0.218288893721355
Merged-chr6-91706262-4	chr6	91706164	91706364	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009320, intron 2 of 14)	intron (NM_009320, intron 2 of 14)	22197.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-24468866-4	chr10	24468766	24468966	+	920.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-126576.0	NM_010217	14219.0	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-24519442-3	chr8	24519366	24519566	+	755.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34480.0	NR_035483									2.84560679336336	2.29643784002814	1.67652916784143	2.00864707342976	2.86880962578119	2.31331663459112	2.9611449474241	2.01873814532516	0.657017443346748	0.439932938861606	0.909249686890578
Merged-chr12-14904552-2	chr12	14904452	14904652	+	911.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17B|LTR|ERVK	145837.0	NR_045960	73972.0	Mm.107680	NR_045960	ENSMUSG00000113644	4930448C13Rik	-	RIKEN cDNA 4930448C13 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-96162625-4	chr5	96162511	96162711	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178854)	promoter-TSS (NM_178854)	-621.0	NM_144910	231464.0	Mm.28374	NM_144910	ENSMUSG00000034724	Cnot6l	4932442K20Rik	CCR4-NOT transcription complex, subunit 6-like	protein-coding	3.90269707886847	3.93322043027535	3.95654742876716	4.52230689421961	4.42552984627413	4.98635314864919	5.15198762122027	4.19088422180307	0.809543065489351	0.050939961748175	0.328943843409367
Merged-chr1-135660311-3	chr1	135660201	135660401	+	967.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59762.0	NM_001360782	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-16665244-4	chr1	16665151	16665351	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026392)	promoter-TSS (NM_026392)	60.0	NM_026392	70397.0	Mm.194225	NM_026392	ENSMUSG00000025940	Tmem70	1110020A09Rik|2210416J16Rik	transmembrane protein 70	protein-coding	4.46641724905267	4.73239443737356	5.15063419420885	4.4603446325958	4.98609955871039	4.41688261603024	5.82659903293027	4.37774874032086	0.374375901708887	0.355429859760694	0.853664850644233
Merged-chr11-50231497-2	chr11	50231397	50231597	+	778.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_105884)	promoter-TSS (NR_105884)	-748.0	NR_105884	102466765.0		NR_105884	ENSMUSG00000098474	Mir6919	Gm27889|mmu-mir-6919	microRNA 6919	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-67334903-2	chr13	67334803	67335003	+	662.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A2-int|LTR|ERVL-MaLR	-2343.0	NM_177622	218314.0	Mm.289695	NM_177622	ENSMUSG00000057842	Zfp595	A230042K10Rik|Rslcan23	zinc finger protein 595	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-8255582-3	chr14	8255482	8255682	+	921.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053115, intron 4 of 14)	MER91B|DNA|hAT-Tip100	3257.0	NM_001161667	93732.0	Mm.28700	NM_053115	ENSMUSG00000021751	Acox2	THCCox	acyl-Coenzyme A oxidase 2, branched chain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-134714165-4	chr4	134714057	134714257	+	985.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1I|LTR|ERVL-MaLR	-9867.0	NM_207237	230815.0	Mm.18905	NM_207237	ENSMUSG00000037306	Man1c1	AI593348	mannosidase, alpha, class 1C, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-23279970-4	chr16	23279876	23280076	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252505, intron 2 of 7)	intron (NM_001252505, intron 2 of 7)	-10494.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-21783935-4	chr13	21783900	21784100	+	894.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178207)	promoter-TSS (NM_178207)	-603.0	NM_178207	319153.0	Mm.390558	NM_178207	ENSMUSG00000101972	Hist1h3i	H3-H	histone cluster 1, H3i	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-29675147-2	chr19	29675047	29675247	+	861.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22794.0	NM_029993	77836.0	Mm.138437	NM_029993	ENSMUSG00000024806	Mlana	A930034P04Rik|Mart1	melan-A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-118050491-4	chr10	118050388	118050588	+	971.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-91299.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34011304-1	chr17	34011204	34011404	+	580.0	f1_balb.idr	Intergenic	Intergenic	-10957.0	NM_001347346	14972.0	Mm.422886	NM_001001892	ENSMUSG00000061232	H2-K1	H-2K|H-2K(d)|H2-K|K-f	histocompatibility 2, K1, K region	protein-coding	0.480041593553951	0.199203378309016	0.190881001860778	1.07331120659648	1.13630167949477	0.201066741883805	0.1927245708668	0.185532400550146	-0.146312704889238	0.942863088417774	1
Merged-chr1-135691647-3	chr1	135691539	135691739	+	792.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28424.0	NM_001360782	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32514497-2	chr2	32514397	32514597	+	569.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20862.0	NM_153560	98952.0	Mm.4065	NM_153560	ENSMUSG00000039157	Fam102a	AI426465|C230093N12Rik|Eeig1	family with sequence similarity 102, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-75735975-2	chr2	75735857	75736057	+	635.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31294.0	NM_010902	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	-0.385350606621458	-0.369804007814089	0.531202108529421	0.0829839209169472	-0.384372476806798	-0.368665993180001	-0.373749512176561	-0.37810822335076	-3.7778038374137	0.137620729616682	1
Merged-chr9-44134189-2	chr9	44134089	44134289	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023061)	promoter-TSS (NM_023061)	296.0	NR_152189	100038560.0	Mm.429758	NR_152189		Gm10687	-	predicted gene 10687	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-7022827-2	chr19	7022727	7022927	+	564.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016737, intron 10 of 13)	B2_Mm2|SINE|B2	-3358.0	NM_001362399	108101.0	Mm.157591	NM_153795	ENSMUSG00000024965	Fermt3	C79673|Kindlin3	fermitin family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-25587002-3	chr14	25586883	25587083	+	778.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033492, exon 1 of 1)	non-coding (NR_033492, exon 1 of 1)	179.0	NR_033492	77592.0	Mm.444871	NM_175264		4931406H21Rik	-	RIKEN cDNA 4931406H21 gene	ncRNA	1.2918156032557	2.21589190439747	1.56298311283397	0.956560200538584	1.4475644108668	2.23392130218073	1.71959744688101	0.959400236880955	0.223328675860555	0.855881453545233	0.998431161219273
Merged-chr6-58831614-5	chr6	58831492	58831692	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001361967, exon 1 of 23)	5' UTR (NM_001361967, exon 1 of 23)	127.0	NM_001361966	73998.0	Mm.191892	NM_028705	ENSMUSG00000029804	Herc3	5730409F18Rik|AI646603|mKIAA0032	hect domain and RLD 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-13649348-4	chr8	13649260	13649460	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 1 of 23)	L1M4|LINE|L1	28227.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-28454815-3	chr19	28454714	28454914	+	905.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175459, intron 4 of 10)	intron (NM_175459, intron 4 of 10)	-223410.0	NR_045330	320176.0	Mm.406716	NR_045330	ENSMUSG00000097735	D930032P07Rik	-	RIKEN cDNA D930032P07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-160646518-5	chr2	160646516	160646716	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009408, exon 2 of 21)	exon (NM_009408, exon 2 of 21)	719.0	NM_009408	21969.0	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-40781753-1	chr12	40781653	40781853	+	602.0	f0_balb.idr	intron (NM_172803, intron 30 of 52)	intron (NM_172803, intron 30 of 52)	-242337.0	NM_053122	93757.0	Mm.363813	NM_053122	ENSMUSG00000056899	Immp2l	AI853880|IMP2|Tg(HLA-A/H2-D)2Enge	IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-14891472-4	chr8	14891378	14891578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012000, intron 1 of 2)	intron (NM_012000, intron 1 of 2)	2942.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88432771-3	chr3	88432669	88432869	+	733.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-7628.0	NM_001357749	229517.0	Mm.301740	NM_178696	ENSMUSG00000050144	Slc25a44	6720482A19|B430110G05Rik	solute carrier family 25, member 44	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97684826-4	chr11	97684713	97684913	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_139311, exon 20 of 20)	3' UTR (NM_139311, exon 20 of 20)	-1139.0	NM_001085500	217149.0	Mm.29659	NM_001085500	ENSMUSG00000078695	Cisd3	Mel-13|Mel13	CDGSH iron sulfur domain 3	protein-coding	2.17852692874248	2.45247589552786	1.88714387418244	2.16435533739196	2.6000649612233	3.0080278925606	3.26041002960575	1.63663689392357	1.2142383726605	0.148724848274839	0.599939136169878
Merged-chr5-105418420-2	chr5	105418320	105418520	+	828.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033550, intron 1 of 4)	intron (NM_001033550, intron 1 of 4)	2645.0	NM_001033550	433926.0	Mm.439781	NM_001033550	ENSMUSG00000070639	Lrrc8b	2210408K08Rik|R75581|Ta-lrrp|mKIAA0231	leucine rich repeat containing 8 family, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-92021163-4	chr16	92021076	92021276	+	998.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-37146.0	NM_017391	53881.0	Mm.217354	NM_017391	ENSMUSG00000089774	Slc5a3	AA623876|BF642829|Smit1	solute carrier family 5 (inositol transporters), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98740680-4	chr11	98740572	98740772	+	840.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1113.0	NM_178060	21833.0	Mm.265917	NM_178060	ENSMUSG00000058756	Thra	6430529J03Rik|AW259572|Erba|Nr1a1|Rvr|T3R[a]|T3Ralpha|Thra1|Thra2|c-erbA-1|c-erbA-alpha|c-erbAalpha	thyroid hormone receptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55217290-1	chr19	55217190	55217390	+	540.0	f1_c57bl6.idr	exon (NM_001081076, exon 13 of 21)	exon (NM_001081076, exon 13 of 21)	23946.0	NM_001081076	73707.0	Mm.489987	NM_001081076	ENSMUSG00000055523	Gucy2g	2410077I05Rik|GC-G	guanylate cyclase 2g	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-132169367-4	chr2	132169288	132169488	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-24068.0	NM_001355430	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-113341734-4	chr6	113341652	113341852	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133926, intron 2 of 11)	intron (NM_133926, intron 2 of 11)	2170.0	NM_133926	52163.0	Mm.277373	NM_133926	ENSMUSG00000030272	Camk1	AI505105|CaMKIalpha|D6Ertd263e	calcium/calmodulin-dependent protein kinase I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44930842-2	chr7	44930742	44930942	+	600.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ZP3AR|Satellite|Satellite	-1352.0	NM_001077264	11771.0	Mm.6877	NM_007458	ENSMUSG00000060279	Ap2a1	Adtaa	adaptor-related protein complex 2, alpha 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-99235656-3	chr5	99235572	99235772	+	789.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145839, intron 4 of 13)	intron (NM_145839, intron 4 of 13)	17255.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-10331302-4	chr3	10331202	10331402	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001010834)	TTS (NM_001010834)	137.0	NM_001310433	55980.0	Mm.183042	NM_018864	ENSMUSG00000027531	Impa1	2610002K09Rik|2900059K10Rik|AI325909	inositol (myo)-1(or 4)-monophosphatase 1	protein-coding	3.52634347272806	1.98416549435227	4.1526391967554	3.05524348273455	3.16959597909521	3.63187195887946	2.95673932298771	2.28653258079868	-0.493489316032015	0.487247651538817	0.932875548244773
Merged-chr8-39955681-3	chr8	39955582	39955782	+	903.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6C|LTR|ERVK	-313004.0	NM_001113326	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	0.994941927170934	1.0933135636549	1.06276763872755	1.5013705288633	2.41504132465937	2.65388318686647	2.27834545926814	2.4716580951374	4.27968199895053	0.000827768659836606	0.0165894794778167
Merged-chr12-111465921-2	chr12	111465821	111466021	+	657.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC4a|LINE|L1	19902.0	NM_001033248	212539.0	Mm.81916	NM_001033248	ENSMUSG00000010529	Gm266	-	predicted gene 266	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122400374-3	chr5	122400239	122400439	+	900.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019824, intron 2 of 6)	intron (NM_019824, intron 2 of 6)	8461.0	NM_019824	56378.0	Mm.275942	NM_019824	ENSMUSG00000029465	Arpc3	1110006A04Rik|p21-ARC|p21-Ar|p21Arc	actin related protein 2/3 complex, subunit 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-94942771-2	chr8	94942643	94942843	+	917.1666869999999	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001145972, exon 12 of 12)	3' UTR (NM_001145972, exon 12 of 12)	19049.0	NM_001145972	382045.0	Mm.334726	NM_001033468	ENSMUSG00000061577	Adgrg5	Gm1109|Gpr114|PGR27	adhesion G protein-coupled receptor G5	protein-coding	-1.56355737717652	-1.81244775989375	-1.82128546162293	-1.82854501295842	-1.83962066705452	-1.81053259306168	-1.81928479966835	-1.82724555674025	-1.28500227969968	0.715751224811686	1
Merged-chr8-85066094-1	chr8	85065994	85066194	+	746.0	f1_balb.idr	exon (NM_026791, exon 7 of 10)	exon (NM_026791, exon 7 of 10)	1888.0	NM_001195531	100503710.0	Mm.440240	NM_001195531	ENSMUSG00000095845	Gm5741	EG436049	predicted gene 5741	protein-coding	-1.5061220274826	-1.47360709383584	-1.48343987814663	-1.49151681994238	-1.50383953926072	-1.47147628845725	-1.0170701920923	-1.49007105122263	2.15652851593596	0.535359572134045	1
Merged-chr19-7307244-3	chr19	7307151	7307351	+	773.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080388, intron 1 of 16)	intron (NM_001080388, intron 1 of 16)	-11804.0	NM_001080390	13728.0	Mm.258986	NM_007928	ENSMUSG00000024969	Mark2	EMK-1|Emk|Par-1|Par-1b	MAP/microtubule affinity regulating kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-8893725-4	chr5	8893641	8893841	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008830)	promoter-TSS (NM_008830)	20.0	NM_008830	18670.0	Mm.297825	NM_008830	ENSMUSG00000042476	Abcb4	Mdr2|Pgy-2|Pgy2|mdr-2	ATP-binding cassette, sub-family B (MDR/TAP), member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-37246868-4	chr17	37246761	37246961	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14493.0	NM_146512	258505.0	Mm.353371	NM_146512	ENSMUSG00000058802	Olfr97	MOR156-2	olfactory receptor 97	protein-coding	3.49264885831214	4.67406040008094	3.33051131617566	3.95933844464123	3.79229822878663	4.23313419911379	4.4287259732437	4.03940119780458	0.238281100285452	0.623273764788488	0.980259659844413
Merged-chr7-13034787-4	chr7	13034719	13034919	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026885)	promoter-TSS (NM_026885)	-42.0	NM_001360731	68953.0	Mm.295670	NM_026885	ENSMUSG00000033916	Chmp2a	1500016L11Rik|mVps2	charged multivesicular body protein 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-40743851-4	chr9	40743692	40743892	+	979.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133733, intron 1 of 6)	intron (NM_133733, intron 1 of 6)	-57481.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	2.2299641588149	2.14912100294686	1.5180010520907	3.49488499195883	4.37362115910747	3.67584709604017	3.5540332839346	2.80748210008485	1.84325642419209	0.0138817249782439	0.137647054784273
Merged-chr18-79271583-3	chr18	79271480	79271680	+	911.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-162189.0	NM_053099	240427.0	Mm.312871	NM_053099	ENSMUSG00000024548	Setbp1	C130092E12|Seb|mKIAA0437	SET binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-34483949-2	chr1	34483849	34484049	+	848.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-14463.0	NM_009355	21755.0	Mm.10725	NM_009355	ENSMUSG00000026125	Prss39	Tesp1	protease, serine 39	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-95418034-4	chr10	95417918	95418118	+	997.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045339, intron 1 of 4)	intron (NR_045339, intron 1 of 4)	643.0	NR_045338	70523.0	Mm.158398	NR_045338	ENSMUSG00000097766	5730420D15Rik	-	RIKEN cDNA 5730420D15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133400230-1	chr4	133400130	133400330	+	546.0	f1_c57bl6.idr	intron (NM_016981, intron 1 of 11)	intron (NM_016981, intron 1 of 11)	30454.0	NR_039582	100628620.0		NR_039582	ENSMUSG00000092745	Mir5122	mmu-mir-5122|mu-mir-5122	microRNA 5122	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-30888998-4	chr5	30888897	30889097	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001294262)	promoter-TSS (NM_001294262)	-9.0	NM_001048192	231093.0	Mm.440364	NM_174849	ENSMUSG00000029165	Agbl5	9430057O19Rik|CCP5	ATP/GTP binding protein-like 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-31066118-1	chr16	31066018	31066218	+	780.666687	f1_c57bl6.idr	intron (NM_198626, intron 1 of 3)	ORR1D1|LTR|ERVL-MaLR	15314.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	1.27718224751823	0.306639477820218	1.03507326630707	0.291275805421831	0.28167234308082	0.308574393441099	0.502229370137272	0.636924135611662	-2.13289364397165	0.257973112184052	1
Merged-chr19-14585476-4	chr19	14585381	14585581	+	984.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302951, intron 4 of 19)	intron (NM_001302951, intron 4 of 19)	11732.0	NM_001302951	21888.0	Mm.103638	NM_011600	ENSMUSG00000024642	Tle4	5730411M05Rik|AA792082|Bce-1|Bce1|ESTM13|ESTM14|Grg4|X83332|X83333|grg-4	transducin-like enhancer of split 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-53759769-4	chr6	53759673	53759873	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Eulor8|DNA|TcMar?	61052.0	NM_025817	66873.0	Mm.422727	NM_025817	ENSMUSG00000043496	Tril	1200009O22Rik|AI316813|mKIAA0644	TLR4 interactor with leucine-rich repeats	protein-coding	5.33652247395811	4.84428184980281	5.16295651476418	4.74513506635224	4.77861224074464	4.77869278228286	5.09496355796302	4.27923245838759	-0.347095517605208	0.312235179397634	0.813683249872461
Merged-chr15-3259742-1	chr15	3259642	3259842	+	688.0	f0_balb.idr	Intergenic	Intergenic	-11025.0	NM_001042613	20363.0	Mm.392203	NM_009155	ENSMUSG00000064373	Selenop	AU018766|D15Ucla1|Se-P|Sepp1|selp	selenoprotein P	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89831369-5	chr3	89831230	89831430	+	773.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172530)	promoter-TSS (NM_172530)	-40.0	NM_172530	214547.0	Mm.225	NM_172530	ENSMUSG00000046280	She	9430022A14	src homology 2 domain-containing transforming protein E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132546065-3	chr4	132545953	132546153	+	749.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172400, intron 5 of 8)	intron (NM_172400, intron 5 of 8)	10494.0	NM_172400	68598.0	Mm.29685	NM_172400	ENSMUSG00000054405	Dnajc8	1110021D09Rik|2010009J04Rik|AL024084|AU019262|AU044514	DnaJ heat shock protein family (Hsp40) member C8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-127971033-1	chr3	127970933	127971133	+	618.0	f0_balb.idr	Intergenic	Intergenic	54862.0	NR_040552	329753.0	Mm.119720	NR_040552	ENSMUSG00000104763	9830132P13Rik	9830132P13	RIKEN cDNA 9830132P13 gene	ncRNA	1.38436636820308	2.49504546481123	1.2247161310764	3.15830754020943	2.60591582453937	1.58576791867315	1.76724227954803	3.4845578300323	0.520867497114596	0.609879390760542	0.974992433107985
Merged-chr17-35440181-5	chr17	35440085	35440285	+	842.7666630000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198561, intron 3 of 4)	intron (NM_001198561, intron 3 of 4)	1018.0	NM_001201460	110558.0	Mm.431282	NM_001201460		H2-Q9	H-2Q9|Ped|Qa-2|Qa-9|Qa9	histocompatibility 2, Q region locus 9	protein-coding	1.78169081158062	0.815372801220507	1.79480206417686	1.73535928858286	1.10913340364909	0.818685404313713	0.803815749191839	1.16589948929596	-2.50190020269904	0.0778095686922685	0.424602428063904
Merged-chr17-24140996-3	chr17	24140916	24141116	+	851.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286662, intron 1 of 13)	intron (NM_001286662, intron 1 of 13)	578.0	NM_011062	18607.0	Mm.10504	NM_011062	ENSMUSG00000024122	Pdpk1	Pdk1	3-phosphoinositide dependent protein kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-43782196-7	chr5	43782109	43782309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159963)	promoter-TSS (NM_001159963)	-60.0	NM_178729	242960.0	Mm.25794	NM_178729	ENSMUSG00000039753	Fbxl5	Fbl4|Fir4	F-box and leucine-rich repeat protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36464445-2	chr18	36464345	36464545	+	917.625	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	-9950.0	NM_026027	67199.0	Mm.30184	NM_026027	ENSMUSG00000024346	Pfdn1	2700086I23Rik|AA408327|AU044714	prefoldin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-31495214-2	chr5	31495114	31495314	+	711.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133756, intron 1 of 13)	L2b|LINE|L2	473.0	NM_133756	74254.0	Mm.348649	NM_133756	ENSMUSG00000064037	Gpn1	2410004J02Rik|AI449615|MBDIN|NTPBP|Xab1	GPN-loop GTPase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-3816650-1	chr7	3816550	3816750	+	837.0	f0_c57.idr	intron (NM_001289428, intron 11 of 12)	intron (NM_001289428, intron 11 of 12)	28401.0	NM_011089	18725.0	Mm.482470	NM_011089	ENSMUSG00000089942	Pira2	6M23	paired-Ig-like receptor A2	protein-coding	-0.680810270979964	-0.826112929075494	-0.830929440789095	-0.833797598448495	-0.837866926465875	-0.823066979179801	0.00228296503704961	-0.833295853670773	2.43779967960921	0.40321424150816	1
Merged-chr9-20645345-4	chr9	20645219	20645419	+	996.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286530)	promoter-TSS (NM_001286530)	516.0	NR_153859	66177.0	Mm.390165	NM_025401	ENSMUSG00000084786	Ubl5	1110030M22Rik|beacon	ubiquitin-like 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-143020372-2	chr7	143020272	143020472	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001128080)	TTS (NM_001128080)	14713.0	NM_001128081	27027.0	Mm.28172	NM_020286	ENSMUSG00000000244	Tspan32	AW208513|Art-1|BB235973|D7Wsu37e|Phemx|Tssc6	tetraspanin 32	protein-coding	2.22740068047	1.77459096226298	2.93872529790169	3.00860223939523	2.24631246040565	1.78680580592663	2.96163257589264	3.0238675728356	0.0359149997456337	0.96585430139434	0.998431161219273
Merged-chr1-82946130-2	chr1	82946030	82946230	+	890.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	92318.0	NM_030556	80721.0	Mm.261542	NM_030556	ENSMUSG00000038496	Slc19a3	A230084E24Rik|AI788884|ThTr2	solute carrier family 19, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27733909-2	chr2	27733809	27734009	+	596.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290482, intron 1 of 9)	intron (NM_001290482, intron 1 of 9)	23326.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-24237588-3	chr7	24237468	24237668	+	772.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020262)	promoter-TSS (NM_020262)	30.0	NM_020262	56869.0	Mm.103751	NM_020262	ENSMUSG00000074283	Zfp109	-	zinc finger protein 109	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-99436536-4	chr9	99436440	99436640	+	949.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_008624, exon 1 of 6)	5' UTR (NM_008624, exon 1 of 6)	172.0	NM_008624	17532.0	Mm.2045	NM_008624	ENSMUSG00000032470	Mras	2900078C09Rik|AI326250	muscle and microspikes RAS	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-145865321-1	chr2	145865221	145865421	+	596.0	f1_c57bl6.idr	intron (NM_028724, intron 9 of 12)	intron (NM_028724, intron 9 of 12)	-37920.0	NM_026425	67877.0	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	0.71823789255614	1.77794284938985	1.17421430945871	1.90867221582429	0.721688674566558	1.02643031684788	0.758152428775137	1.7521442888448	-1.1409400976309	0.431706688033608	0.904679012727573
Merged-chr8-105857952-2	chr8	105857852	105858052	+	558.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-2581.0	NM_026532	68051.0	Mm.455474	NM_026532	ENSMUSG00000008450	Nutf2	2700067I02Rik|AI115459|AI413596|AW546000|Ntf2|Ntf3|PP15	nuclear transport factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-64341114-4	chr9	64341024	64341224	+	953.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177784)	promoter-TSS (NM_001177784)	133.0	NM_001001295	213550.0	Mm.268341	NM_172519	ENSMUSG00000032396	Dis3l	AV340375	DIS3 like exosome 3'-5' exoribonuclease	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-103097816-3	chr3	103097720	103097920	+	871.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033303, intron 13 of 15)	intron (NM_001033303, intron 13 of 15)	23806.0	NM_001033303	229665.0	Mm.331272	NM_001033303	ENSMUSG00000070385	Ampd1	AI553520|Ampd-1	adenosine monophosphate deaminase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-91259987-3	chr1	91259893	91260093	+	981.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355764, intron 3 of 10)	URR1A|DNA|hAT-Charlie	9427.0	NM_001355764	67921.0	Mm.337238	NM_026454	ENSMUSG00000034343	Ube2f	2510010F15Rik|AI851109	ubiquitin-conjugating enzyme E2F (putative)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-76884722-3	chr11	76884623	76884823	+	894.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER21B|LTR|ERVL	-19822.0	NM_025655	66601.0	Mm.25138	NM_025655	ENSMUSG00000020839	Tmigd1	2010002A20Rik|Tmigd	transmembrane and immunoglobulin domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-48282694-2	chr9	48282599	48282799	+	922.9166869999999	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	58199.0	NM_030069	78252.0	Mm.31626	NM_030069	ENSMUSG00000032028	Nxpe2	4432416J03Rik|AI323362|Fam55b	neurexophilin and PC-esterase domain family, member 2	protein-coding	5.39008719372669	4.81698927480072	5.13427628726281	4.23650176115118	2.39248136209171	2.58178364274824	3.56539804536194	1.61176707670078	-3.12986340991331	3.13706343456968e-08	3.20782560408809e-06
Merged-chr10-63240220-2	chr10	63240120	63240320	+	602.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3577.0	NM_030114	67345.0	Mm.234437	NM_026101	ENSMUSG00000020064	Herc4	1700056O17Rik|4921531D01Rik|9530080M15Rik|mKIAA1593	hect domain and RLD 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-53178213-2	chr18	53178113	53178313	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357463, intron 1 of 15)	intron (NM_001357463, intron 1 of 15)	1921.0	NM_026386	67804.0	Mm.252171	NM_026386	ENSMUSG00000034484	Snx2	0610030A03Rik	sorting nexin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-38118952-1	chr16	38118852	38119052	+	673.0	f0_balb.idr	intron (NM_001347232, intron 1 of 11)	B3A|SINE|B2	-29692.0	NR_033221	414072.0	Mm.483602	NR_033221		BC031361	-	cDNA sequence BC031361	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32287565-2	chr2	32287465	32287665	+	722.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133852)	promoter-TSS (NM_133852)	504.0	NR_110965	72931.0	Mm.27344	NM_175190	ENSMUSG00000044627	Swi5	1500019F05Rik|2900010J23Rik|AI046671	SWI5 recombination repair homolog (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-34147598-3	chr8	34147508	34147708	+	649.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026609)	promoter-TSS (NM_026609)	-869.0	NM_026609	68192.0	Mm.34212	NM_026609	ENSMUSG00000031513	Leprotl1	1110067H13Rik|1520402O14Rik|AI854296	leptin receptor overlapping transcript-like 1	protein-coding	-0.956301058110193	-1.08048890858279	-0.5174261912062	-1.09930773882016	-1.10219358621719	-1.07801123589871	-1.08933406316978	-1.09895072249566	-2.74712229718365	0.3868203743293	1
Merged-chr14-51884873-5	chr14	51884842	51885042	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001029990)	promoter-TSS (NM_001029990)	100.0	NM_001029990	52535.0	Mm.5750	NM_001029990	ENSMUSG00000004561	Mettl17	2310032K15Rik|D14Ertd209e|Mett11d1	methyltransferase like 17	protein-coding	5.97473255302629	6.43356288340025	6.11675520142836	6.24244437973242	6.51138045093219	6.60404020958823	6.17430449410386	6.69237061876695	0.338714948055458	0.113089060070053	0.52650449242973
Merged-chr16-21728070-4	chr16	21727974	21728174	+	908.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33409.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19748566-2	chr7	19748466	19748666	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008990, intron 1 of 8)	intron (NM_008990, intron 1 of 8)	1007.0	NM_008990	19294.0	Mm.4341	NM_008990	ENSMUSG00000062300	Nectin2	AI325026|AI987993|Cd112|MPH|Pvr|Pvrl2|Pvs|nectin-2	nectin cell adhesion molecule 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-82542910-2	chr18	82542810	82543010	+	837.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025245, intron 3 of 3)	ID_B1|SINE|B4	-11553.0	NM_001025258	17196.0	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-4971013-4	chr18	4970930	4971130	+	890.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-75559.0	NM_153153	225115.0	Mm.136791	NM_153153	ENSMUSG00000024236	Svil	AU024053|B430302E16Rik	supervillin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-45102315-1	chr9	45102215	45102415	+	766.666687	f0_balb.idr	intron (NM_001005421, intron 8 of 10)	intron (NM_001005421, intron 8 of 10)	-15561.0	NM_001014761	72821.0	Mm.229373	NM_001014761	ENSMUSG00000070304	Scn2b	2810451E09Rik|AI840361|Gm183	sodium channel, voltage-gated, type II, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-25152761-4	chr9	25152669	25152869	+	732.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020586)	promoter-TSS (NM_020586)	-988.0	NM_020586	80517.0	Mm.142843	NM_020586	ENSMUSG00000008429	Herpud2	5031400M07Rik|AB041580	HERPUD family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-17912937-3	chr14	17912838	17913038	+	645.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113417, intron 2 of 9)	intron (NM_001113417, intron 2 of 9)	-68706.0	NM_009380	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-143520652-2	chr5	143520552	143520752	+	948.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347530, intron 1 of 6)	intron (NM_001347530, intron 1 of 6)	7341.0	NM_009007	19353.0	Mm.292510	NM_009007	ENSMUSG00000001847	Rac1	AL023026|D5Ertd559e	Rac family small GTPase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-67478712-1	chr4	67478612	67478812	+	947.5	f0_balb.idr	Intergenic	MIR3|SINE|MIR	651161.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-38235587-3	chr3	38235480	38235680	+	685.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27461.0	NR_040541	71342.0	Mm.410782	NR_040541	ENSMUSG00000106002	5430434I15Rik	-	RIKEN cDNA 5430434I15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-110373035-2	chr13	110372924	110373124	+	818.25	f0_balb.idr|f0_c57.idr	Intergenic	ORR1A2-int|LTR|ERVL-MaLR	-15852.0	NM_177713	238875.0	Mm.30533	NM_177713	ENSMUSG00000046006	Gapt	9830130M13Rik	Grb2-binding adaptor, transmembrane	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46936152-4	chr8	46935972	46936172	+	878.034058	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50815.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-105684104-4	chr12	105684011	105684211	+	942.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029654, intron 1 of 41)	intron (NM_029654, intron 1 of 41)	1130.0	NM_029654	76559.0	Mm.114362	NM_029654	ENSMUSG00000041341	Atg2b	2410024A21Rik|AI047755|AI503411|AW558123|C030004M05Rik|C630028L02Rik|mKIAA4067	autophagy related 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-60710403-1	chr19	60710303	60710503	+	610.0	f1_balb.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-45584.0	NM_178421	332397.0	Mm.186390	NM_178421	ENSMUSG00000072437	Nanos1	NOS-1	nanos C2HC-type zinc finger 1	protein-coding	0.569049931526859	0.818123272337023	0.591572522324369	0.583177794740558	1.5255769043957	1.15740871444168	1.10888390472432	1.1854670189093	3.92980749975553	0.0152784321960984	0.147040611889403
Merged-chr2-165791277-1	chr2	165791177	165791377	+	560.0	f1_c57bl6.idr	intron (NM_027230, intron 22 of 23)	intron (NM_027230, intron 22 of 23)	66896.0	NM_001252585	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	0.272841766247309	0.801198240517786	1.07065415877193	0.452611209713454	0.670898616240794	0.499571239262945	0.289266187098979	0.283090251439765	-1.51780572572007	0.404308389805826	1
Merged-chr9-94363702-2	chr9	94363602	94363802	+	616.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	174379.0	NM_001033145	68861.0	Mm.258746	NM_001033145	ENSMUSG00000045414	1190002N15Rik	GoPro49|HASF	RIKEN cDNA 1190002N15 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-53246625-4	chr18	53246512	53246712	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029394, intron 1 of 6)	intron (NM_029394, intron 1 of 6)	950.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	4.70753618280962	5.14767472357582	3.99221466170548	4.86341746335653	5.54816990019645	5.9481699840833	5.46154871297894	5.52892712764825	1.04644834444825	0.00113464019452335	0.0214288897738764
Merged-chr19-46513128-2	chr19	46513028	46513228	+	607.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_053100, exon 3 of 6)	exon (NM_053100, exon 3 of 6)	11480.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-61324294-3	chr18	61324158	61324358	+	860.4166869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133249, intron 1 of 11)	intron (NM_133249, intron 1 of 11)	73642.0	NR_029879	723889.0		NR_029879	ENSMUSG00000105200	Mir378a	Mir378|Mirn378|mmu-mir-378|mmu-mir-378a	microRNA 378a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-91301554-4	chr15	91301433	91301633	+	745.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033633, intron 7 of 9)	B3|SINE|B2	-109526.0	NM_001358967	26874.0	Mm.295456	NM_011994	ENSMUSG00000055782	Abcd2	ABC39|ALDL1|ALDR|ALDRP	ATP-binding cassette, sub-family D (ALD), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-54476087-4	chr14	54475988	54476188	+	816.895813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080726)	promoter-TSS (NM_080726)	-12.0	NM_080726	140743.0	Mm.274727	NM_080726	ENSMUSG00000022176	Rem2	AW411893	rad and gem related GTP binding protein 2	protein-coding	0.599354596980823	1.00688872462648	0.809736064098652	0.612149242374622	1.37867871717721	0.841706091729267	1.34502734888648	1.07498088782466	2.25773970735322	0.141057583775523	0.585878914195267
Merged-chr11-77973973-2	chr11	77973873	77974073	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001291225, exon 8 of 16)	exon (NM_001291225, exon 8 of 16)	-8843.0	NM_174852	268448.0	Mm.274329	NM_174852	ENSMUSG00000037791	Phf12	2410142K10Rik|F630045O13|PF1|mKIAA1523	PHD finger protein 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-179477295-2	chr1	179477195	179477395	+	867.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027188, intron 1 of 11)	intron (NM_027188, intron 1 of 11)	40746.0	NM_027188	69726.0	Mm.222338	NM_027188	ENSMUSG00000055067	Smyd3	2410008A19Rik|Zmynd1	SET and MYND domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46837464-3	chr19	46837353	46837553	+	843.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001102471, intron 1 of 6)	intron (NM_001102471, intron 1 of 6)	75844.0	NM_001102471	94219.0	Mm.306903	NM_033569	ENSMUSG00000064105	Cnnm2	AU015877|AW048635|Acdp2|Clp2	cyclin M2	protein-coding	3.13545131917465	3.22954905254273	2.88381863999293	3.78263987555652	3.68098469904259	2.32774438587708	3.03102800196206	4.22353227880519	0.325936946912713	0.611939409429016	0.976008377912766
Merged-chr17-59853359-2	chr17	59853259	59853459	+	848.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	-840037.0	NM_026497	67993.0	Mm.36507	NM_026497	ENSMUSG00000024228	Nudt12	0610016O18Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-130640556-2	chr7	130640456	130640656	+	856.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001004468, intron 3 of 21)	intron (NM_001004468, intron 3 of 21)	-52000.0	NM_001347637	57752.0	Mm.86322	NM_021314	ENSMUSG00000030852	Tacc2	mKIAA4180	transforming, acidic coiled-coil containing protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-66808989-2	chr15	66808889	66809089	+	857.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001029841, intron 1 of 7)	intron (NM_001029841, intron 1 of 7)	22840.0	NM_001029841	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-3807073-4	chr13	3806920	3807120	+	749.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-2702.0	NM_027416	70405.0	Mm.20079	NM_027416	ENSMUSG00000063130	Calml3	2310068O22Rik|AI326174	calmodulin-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-98341576-4	chr7	98341484	98341684	+	971.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19704.0	NM_001168540	244152.0	Mm.25317	NM_001024619	ENSMUSG00000049580	Tsku	9530051K01Rik|E2ig4|Lrrc54|Tsk	tsukushi, small leucine rich proteoglycan	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-85970070-4	chr10	85969965	85970165	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177772, intron 12 of 15)	intron (NM_177772, intron 12 of 15)	-12272.0	NM_145422	28088.0	Mm.9257	NM_145422	ENSMUSG00000001783	Rtcb	AI255213|AI463255|D10Wsu52e|FAAP|HSPC117	RNA 2',3'-cyclic phosphate and 5'-OH ligase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-55809952-2	chr16	55809852	55810052	+	626.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	12186.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-102406660-2	chr11	102406560	102406760	+	561.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026542, intron 1 of 11)	intron (NM_026542, intron 1 of 11)	857.0	NM_026542	68066.0	Mm.44226	NM_026542	ENSMUSG00000018677	Slc25a39	3010027G13Rik|D11Ertd333e	solute carrier family 25, member 39	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-6096527-3	chr2	6096409	6096609	+	619.277771	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	33676.0	NM_144883	227545.0	Mm.133542	NM_144883	ENSMUSG00000045319	Proser2	5430407P10Rik|AU067770	proline and serine rich 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55091115-2	chr14	55091015	55091215	+	682.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039198, intron 1 of 9)	intron (NM_001039198, intron 1 of 9)	933.0	NM_001039198	239102.0	Mm.441113	NM_001039198	ENSMUSG00000040721	Zfhx2	ZFH-5	zinc finger homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-31908202-3	chr5	31908099	31908299	+	898.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144541, intron 7 of 11)	intron (NM_144541, intron 7 of 11)	210149.0	NM_144541	107976.0	Mm.482126	NM_144541	ENSMUSG00000052139	Babam2	6030405P19Rik|AI429776|B830038C02Rik|Bre	BRISC and BRCA1 A complex member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-153613591-2	chr3	153613491	153613691	+	783.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011372, intron 1 of 4)	intron (NM_011372, intron 1 of 4)	111542.0	NM_011372	20447.0	Mm.296453	NM_011372	ENSMUSG00000052544	St6galnac3	Siat7c	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3786878-3	chr4	3786770	3786970	+	889.6555789999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 12 of 12)	intron (NM_001111096, intron 12 of 12)	48785.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	-0.626795936727247	-0.617598192353956	-0.315173239252285	-0.622956820980865	-0.373047350024743	-0.616912341051633	-0.619962799504541	-0.219295303822958	1.11186571780102	0.684243304275767	1
Merged-chr12-35026146-4	chr12	35026049	35026249	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21040.0	NM_001014973	217463.0	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	4.21249736383156	2.99332902340012	3.98797936684358	4.37412526573523	3.71945758800497	3.86903426208064	3.580426180098	3.06947687667942	-0.583870979541825	0.264900800656929	0.767681215270231
Merged-chr14-29978459-4	chr14	29978424	29978624	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027493, exon 1 of 13)	exon (NM_027493, exon 1 of 13)	187.0	NM_027493	56249.0	Mm.215110	NM_027493	ENSMUSG00000015971	Actr8	5730542K05Rik|ARP8	ARP8 actin-related protein 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-83517104-2	chr14	83517004	83517204	+	561.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	558186.0	NR_153783	102635012.0	Mm.399509	NR_153783	ENSMUSG00000115043	Gm32455	-	predicted gene, 32455	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-49276217-4	chr2	49276110	49276310	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290656, intron 6 of 9)	intron (NM_001290656, intron 6 of 9)	30310.0	NM_001290656	109241.0	Mm.440436	NM_029924	ENSMUSG00000036792	Mbd5	9430004D19Rik|AA536666|AI426407|C030040A15Rik|Gm1630	methyl-CpG binding domain protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180771934-4	chr1	180771847	180772047	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41658.0	NM_008210	15078.0	Mm.138832	NM_008210	ENSMUSG00000060743	H3f3a	EyeLinc14|H3.3A	H3 histone, family 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-12424350-1	chr15	12424250	12424450	+	593.0	f0_balb.idr	intron (NM_001081064, intron 5 of 23)	intron (NM_001081064, intron 5 of 23)	102854.0	NM_025673	66629.0	Mm.157655	NM_025673	ENSMUSG00000022200	Golph3	4733401N08Rik|5730410D03Rik|AW413496	golgi phosphoprotein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-63381749-3	chr10	63381656	63381856	+	876.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253685)	promoter-TSS (NM_001253685)	-687.0	NM_001253685	30045.0	Mm.32550	NM_013888	ENSMUSG00000036764	Dnajc12	Jdp1|mJDP1	DnaJ heat shock protein family (Hsp40) member C12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-125355776-2	chr5	125355676	125355876	+	948.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-14682.0	NM_001205083	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-91109565-1	chr12	91109465	91109665	+	744.5	f0_balb.idr	promoter-TSS (NR_030473)	promoter-TSS (NR_030473)	-664.0	NR_030473	735273.0		NR_030473	ENSMUSG00000076118	Mir669c	Mirn669c|Mirn669c-1	microRNA 669c	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-43109523-4	chr16	43109416	43109616	+	840.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285805, intron 2 of 10)	Lx3B|LINE|L1	-137768.0	NM_181058	56490.0	Mm.136238	NM_019778	ENSMUSG00000022708	Zbtb20	1300017A20Rik|7330412A13Rik|A930017C21Rik|D16Wsu73e|DPZF|HOF|J20|ODA-8S|Oda8|Tg(PDGFB-APPSwInd)20Lms|Zfp288	zinc finger and BTB domain containing 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-121832773-5	chr8	121832664	121832864	+	867.9500119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3195.0	NM_145605	234825.0	Mm.209329	NM_145605	ENSMUSG00000040263	Klhdc4	AA408426|AV352552|BC012312|G430025P05Rik	kelch domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-121684674-2	chr14	121684574	121684774	+	623.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_134074, intron 1 of 52)	RMER1B|Other|Other	13743.0	NM_001347596	105445.0	Mm.378591	NM_134074	ENSMUSG00000025558	Dock9	AA959601|AW538057|B230309H04Rik|D14Wsu89e|Zizimin1|mKIAA1058	dedicator of cytokinesis 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-8880921-4	chr19	8880825	8881025	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001160356)	promoter-TSS (NM_001160356)	8.0	NM_001160356	107197.0	Mm.381181	NM_001160356	ENSMUSG00000071654	Uqcc3	AI462493|Cbp4	ubiquinol-cytochrome c reductase complex assembly factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118502350-2	chr11	118502250	118502450	+	680.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285437, intron 7 of 13)	intron (NM_001285437, intron 7 of 13)	25518.0	NM_001359368	217364.0	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-20099303-5	chr16	20099207	20099407	+	852.7000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029436, intron 1 of 7)	intron (NM_029436, intron 1 of 7)	1753.0	NM_029436	75785.0	Mm.392450	NM_029436	ENSMUSG00000062901	Klhl24	1110046J11Rik|4930429H24Rik|6530402O20Rik|C85082	kelch-like 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-116263559-3	chr8	116263460	116263660	+	841.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-241455.0	NM_029297	75465.0	Mm.23114	NM_029297	ENSMUSG00000034467	Dynlrb2	1700009A04Rik|DNLC2B|Dncl2b	dynein light chain roadblock-type 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-110466495-2	chr8	110466395	110466595	+	572.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172916, intron 24 of 86)	intron (NM_172916, intron 24 of 86)	35861.0	NR_105058	100861869.0	Mm.84499	NR_105058		Gm21283	-	predicted gene, 21283	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-32953043-2	chr19	32952943	32953143	+	594.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	195466.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-10461401-4	chr16	10461301	10461501	+	784.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14039.0	NM_001013778	383103.0	Mm.325732	NM_001013778	ENSMUSG00000050908	Tvp23a	Fam18a	trans-golgi network vesicle protein 23A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-22076149-4	chr3	22076071	22076271	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030732)	promoter-TSS (NM_030732)	-481.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117282326-4	chr8	117282237	117282437	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	25318.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30426916-2	chr7	30426816	30427016	+	584.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172142, intron 8 of 10)	MER91B|DNA|hAT-Tip100	3641.0	NM_172142	243910.0	Mm.386878	NM_172142	ENSMUSG00000036931	Nfkbid	I-kappa-B-delta|IkappaBNS|ikB-delta	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	protein-coding	-1.11017114721831	-1.22822901294121	-1.23870131823113	-1.24730358160035	-1.25495804221669	-1.22595962069861	-0.779877491848762	-1.24576378057011	1.43438402897066	0.669240522494923	1
Merged-chr10-79827148-2	chr10	79827048	79827248	+	913.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_030218, exon 2 of 5)	exon (NM_030218, exon 2 of 5)	6127.0	NM_030218	78906.0	Mm.33087	NM_030218	ENSMUSG00000035852	Misp	9130017N09Rik	mitotic spindle positioning	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114929811-4	chr11	114929715	114929915	+	953.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199221, intron 1 of 3)	intron (NM_199221, intron 1 of 3)	4571.0	NM_001347651	217304.0	Mm.185355	NM_199221	ENSMUSG00000063193	Cd300lb	CLM-7|Clm7|Gm253|LMIR5	CD300 molecule like family member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101625123-1	chr11	101625023	101625223	+	588.0	f1_c57bl6.idr	Intergenic	RLTR9D|LTR|ERVK	-2826.0	NM_025654	66599.0	Mm.41449	NM_025654	ENSMUSG00000010362	Rdm1	2410008M22Rik|AW212028|Rad52b	RAD52 motif 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96148153-4	chr3	96148045	96148245	+	886.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025613, intron 7 of 12)	intron (NM_001025613, intron 7 of 12)	-13825.0	NM_181409	194126.0	Mm.268536	NM_181409	ENSMUSG00000045934	Mtmr11	AI035306|BC051083|Cra	myotubularin related protein 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-64512379-2	chr18	64512279	64512479	+	729.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001142950, intron 2 of 14)	intron (NM_001142950, intron 2 of 14)	4178.0	NM_027350	70223.0	Mm.29192	NM_027350	ENSMUSG00000024587	Nars	3010001M15Rik|AA960128|ASNRS|C78150	asparaginyl-tRNA synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-20733673-4	chr14	20733572	20733772	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010811, intron 1 of 14)	intron (NM_010811, intron 1 of 14)	890.0	NM_010811	17423.0	Mm.4084	NM_010811	ENSMUSG00000039308	Ndst2	Mndns|NDST-2	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2	protein-coding	-1.06932346315282	-1.04545378193536	-0.220844647149311	-1.06494782147003	-1.06867040657128	-1.04264807175102	-1.05547001227371	-1.06448932552894	-3.08190232315036	0.346744811462451	1
Merged-chr3-159839638-4	chr3	159839497	159839697	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026582)	promoter-TSS (NM_026582)	-53.0	NM_026582	68151.0	Mm.6766	NM_026582	ENSMUSG00000028173	Wls	5031439A09Rik|AI173978|AI987742|EVI|Gpr177	wntless WNT ligand secretion mediator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-26906242-2	chr2	26906142	26906342	+	587.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011513, exon 3 of 3)	3' UTR (NM_011513, exon 3 of 3)	-3355.0	NM_009298	20935.0	Mm.245577	NM_009298	ENSMUSG00000036160	Surf6	D2Wsu129e|Surf-6	surfeit gene 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-110740054-2	chr9	110739954	110740154	+	574.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083936, intron 1 of 13)	intron (NM_001083936, intron 1 of 13)	2556.0	NM_001083936	19228.0	Mm.3542	NM_011199	ENSMUSG00000032492	Pth1r	PPR|Pthr|Pthr1	parathyroid hormone 1 receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-94672788-4	chr9	94672700	94672900	+	848.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177909, intron 1 of 15)	intron (NM_177909, intron 1 of 15)	2908.0	NM_177909	331004.0	Mm.326125	NM_177909	ENSMUSG00000031129	Slc9a9	5730527A11Rik|9930105B05|AI854429|Nhe9	solute carrier family 9 (sodium/hydrogen exchanger), member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-16893158-2	chr12	16893071	16893271	+	718.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	UCON29|DNA|PiggyBac?	-1807.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	0.999662673257321	2.31497923519702	1.8659467970218	1.03962934654466	2.05576529993785	2.22094986742748	1.06888561596447	2.65133911057218	1.07661653723312	0.372001856295421	0.865109408625856
Merged-chr17-34591581-4	chr17	34591440	34591640	+	832.037476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017463)	promoter-TSS (NM_017463)	-931.0	NM_017463	18515.0	Mm.390957	NM_017463	ENSMUSG00000034673	Pbx2	AU043397|G17	pre B cell leukemia homeobox 2	protein-coding	-0.736914761409379	-0.873343884171181	-0.880344662602111	-0.882846822712695	-0.134004505330683	-0.870505868195253	-0.879629701255248	-0.882409573120271	2.27229863748643	0.449865321722137	1
Merged-chr2-180347336-3	chr2	180347196	180347396	+	738.022217	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12617.0	NM_008093	14464.0	Mm.388880	NM_008093	ENSMUSG00000015627	Gata5	-	GATA binding protein 5	protein-coding	-0.778047400830726	-0.899388325918845	-0.906628590570071	-0.908568608772561	-0.552013603193575	-0.896875237439394	-0.906072351344798	-0.618317437363368	1.89319603140518	0.51387425451653	1
Merged-chr7-29492080-4	chr7	29491977	29492177	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081028, intron 2 of 22)	L1MC4|LINE|L1	13383.0	NM_001081028	74206.0	Mm.447042	NM_001081028	ENSMUSG00000030583	Sipa1l3	2610511M17Rik	signal-induced proliferation-associated 1 like 3	protein-coding	4.76595057571115	5.31071135327469	5.01275126335348	4.72714968866781	5.28543154773663	4.85430574029215	5.12116681021642	5.14932235350637	0.179348690496342	0.570823980329538	0.96280404629716
Merged-chr15-76664773-2	chr15	76664673	76664873	+	611.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358910, intron 13 of 18)	intron (NM_001358910, intron 13 of 18)	4192.0	NM_001358911	16581.0	Mm.378950	NM_010630	ENSMUSG00000004187	Kifc2	-	kinesin family member C2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-125596392-4	chr8	125596294	125596494	+	873.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015535, intron 2 of 2)	intron (NR_015535, intron 2 of 2)	11756.0	NR_015535	75930.0	Mm.195663	NR_015535	ENSMUSG00000110629	4930567H12Rik	4930579P07Rik	RIKEN cDNA 4930567H12 gene	ncRNA	3.5567840653654	2.90143042641525	1.91703496880636	3.29573834030725	3.68354997175415	3.04803699892552	2.36545514165619	3.70110627263851	0.414679461539274	0.555955890134954	0.960313897742752
Merged-chr9-108046800-2	chr9	108046700	108046900	+	595.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_013785, exon 6 of 6)	3' UTR (NM_013785, exon 6 of 6)	-2464.0	NM_177910	331026.0	Mm.22554	NM_177910	ENSMUSG00000070284	Gmppb	AI317178|E430010H19	GDP-mannose pyrophosphorylase B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-25648850-4	chr12	25648743	25648943	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	519669.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	2.27381495855161	3.42003376529824	2.47447296017329	3.3401134249372	2.15989732935917	2.43318902551676	1.7656725485502	3.01976683815749	-1.03196813358389	0.192361193421067	0.670655636962211
Merged-chr15-81026976-2	chr15	81026876	81027076	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001082536, intron 3 of 13)	intron (NM_001082536, intron 3 of 13)	49211.0	NM_134091	105835.0	Mm.274943	NM_134091	ENSMUSG00000042303	Sgsm3	1810012I01Rik|AI428557|BB175482|Cip85|R75178|RUSC3|Rutbc3	small G protein signaling modulator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36715945-4	chr18	36715836	36716036	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11B|LTR|ERVK	10879.0	NM_009841	12475.0	Mm.3460	NM_009841	ENSMUSG00000051439	Cd14	-	CD14 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-3387270-4	chr11	3387178	3387378	+	768.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010718, intron 2 of 15)	intron (NM_010718, intron 2 of 15)	-15874.0	NM_173053	16886.0	Mm.124176	NM_010718	ENSMUSG00000020451	Limk2	Limk-2|whe	LIM motif-containing protein kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-43748618-2	chr7	43748518	43748718	+	674.333374	f1_balb.idr|f1_c57bl6.idr	intron (NR_077063, intron 2 of 2)	MLTR14|LTR|ERV1	7318.0	NR_077063	100504720.0	Mm.226595	NR_077063		2310002F09Rik	-	RIKEN cDNA 2310002F09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-81335094-2	chr13	81334994	81335194	+	790.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 83 of 89)	intron (NM_054053, intron 83 of 89)	298050.0	NM_054053	110789.0	Mm.288694	NM_054053	ENSMUSG00000069170	Adgrv1	Frings|Gpr98|Mass1|Mgr1|VLGR1	adhesion G protein-coupled receptor V1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-121579810-2	chr8	121579710	121579910	+	758.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1004.0	NM_133765	76454.0	Mm.24829	NM_133765	ENSMUSG00000052934	Fbxo31	1110003O08Rik|2310046N15Rik|Fbx14|Fbxo14	F-box protein 31	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-137529600-2	chr5	137529500	137529700	+	780.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_105846)	promoter-TSS (NR_105846)	-6.0	NR_105846	102465227.0		NR_105846	ENSMUSG00000098597	Mir6418	Gm27629|mir-6418|mmu-mir-6418	microRNA 6418	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-154300706-4	chr2	154300586	154300786	+	963.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	-6558.0	NM_001025574	433492.0	Mm.330682	NM_001025574	ENSMUSG00000067996	Bpifb9b	5430413K10Rik|AI413838	BPI fold containing family B, member 9B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-10556040-4	chr10	10555954	10556154	+	969.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026405, intron 1 of 2)	intron (NM_026405, intron 1 of 2)	2153.0	NM_026405	67844.0	Mm.31486	NM_026405	ENSMUSG00000019832	Rab32	2810011A17Rik|AU022057	RAB32, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30591104-2	chr7	30591004	30591204	+	790.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_021397, exon 2 of 6)	exon (NM_021397, exon 2 of 6)	1724.0	NR_106134	102465774.0		NR_106134	ENSMUSG00000098553	Mir3569	Gm27279|mmu-mir-3569	microRNA 3569	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-78194652-2	chr2	78194552	78194752	+	550.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_108098)	TTS (NR_108098)	-42895.0	NM_177843	329436.0	Mm.235448	NM_177843		Gm14461	A830093M07	predicted gene 14461	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-36865755-3	chr17	36865663	36865863	+	825.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177872, intron 2 of 6)	MTD|LTR|ERVL-MaLR	1424.0	NM_001024134	69097.0	Mm.307027	NM_001024134	ENSMUSG00000050747	Trim15	1810012B10Rik	tripartite motif-containing 15	protein-coding	0.422331787597753	0.273009421135965	0.262476852207386	0.775664814938051	0.717363303332797	0.275356909275928	1.59689168928301	0.255665214661817	1.9460055461356	0.284444503356795	1
Merged-chr8-83081847-4	chr8	83081692	83081892	+	866.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177378, intron 6 of 6)	MTE2a|LTR|ERVL-MaLR	-83560.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	2.10446310829341	2.51086030832976	2.42497667842531	3.26893332435759	2.56847268039516	1.50976847883843	2.56992407729926	3.09949419850102	-0.189252634571272	0.822472130006704	0.998431161219273
Merged-chr9-120083321-4	chr9	120083212	120083412	+	916.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16A|LTR|ERVL	-8821.0	NM_007720	12776.0	Mm.442098	NM_007720	ENSMUSG00000042262	Ccr8	C-C|C-C CKR-8|CC-CKR-8|CCR-8|CKR-8|Cmkbr8|mCCR8	chemokine (C-C motif) receptor 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100443907-4	chr7	100443743	100443943	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001017985, intron 27 of 32)	intron (NM_001017985, intron 27 of 32)	-29148.0	NM_009464	22229.0	Mm.6254	NM_009464	ENSMUSG00000032942	Ucp3	AI645527|Slc25a9|UCP-3	uncoupling protein 3 (mitochondrial, proton carrier)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-9165517-2	chr5	9165417	9165617	+	561.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-3741.0	NR_152861	23857.0	Mm.22480	NM_011806	ENSMUSG00000042508	Dmtf1	Dimp|Dmp1	cyclin D binding myb-like transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-22071714-2	chr6	22071614	22071814	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081351, intron 4 of 21)	intron (NM_001081351, intron 4 of 21)	85804.0	NM_001081351	214642.0	Mm.221404	NM_001081351	ENSMUSG00000062980	Cped1	6720481P07|A430107O13Rik|AI552584	cadherin-like and PC-esterase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-51456638-4	chr10	51456537	51456737	+	954.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23975.0	NM_008147	14727.0	Mm.439661	NM_008147	ENSMUSG00000112023	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-58563300-4	chr14	58563209	58563409	+	980.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	490623.0	NM_013518	14180.0	Mm.8846	NM_013518	ENSMUSG00000021974	Fgf9	Eks	fibroblast growth factor 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-84286924-3	chr1	84286820	84287020	+	991.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2275.0	NM_001003948	98496.0	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4|P-CLI1	phosphotyrosine interaction domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-88257331-4	chr17	88257237	88257437	+	926.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	131825.0	NM_001190356	225058.0	Mm.312053	NM_001190356		Gm4832	EG225058	predicted gene 4832	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16925010-2	chr7	16924910	16925110	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007590)	promoter-TSS (NM_007590)	-978.0	NM_007590	12315.0	Mm.288630	NM_007590	ENSMUSG00000019370	Calm3	CaMA|Cam3|Camc|R75142	calmodulin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-82772142-4	chr6	82772043	82772243	+	852.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013820, intron 1 of 17)	intron (NM_013820, intron 1 of 17)	2311.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-46009833-2	chr7	46009733	46009933	+	917.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_018795, intron 10 of 30)	intron (NM_018795, intron 10 of 30)	20453.0	NM_018795	27421.0	Mm.63514	NM_018795	ENSMUSG00000030834	Abcc6	Abcc1b|DCC|Dyscalc1|Mrp6|dyscalc	ATP-binding cassette, sub-family C (CFTR/MRP), member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-75857691-2	chr10	75857591	75857791	+	609.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	2559.0	NM_010798	17319.0	Mm.2326	NM_010798	ENSMUSG00000033307	Mif	GIF|Glif	macrophage migration inhibitory factor (glycosylation-inhibiting factor)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19370192-3	chr7	19370071	19370271	+	823.266663	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001010836, exon 4 of 13)	exon (NM_001010836, exon 4 of 13)	8955.0	NM_001010836	333654.0	Mm.333640	NM_001010836	ENSMUSG00000040734	Ppp1r13l	AV260376|IASPP|Nkip1|wa3	protein phosphatase 1, regulatory (inhibitor) subunit 13 like	protein-coding	1.31506192181877	0.551401623406319	1.04681164765123	0.532984756213095	1.06224366463867	0.553717148534893	0.543347589787859	1.42290456415151	0.203589701131913	0.905061397526527	0.998431161219273
Merged-chr3-90266503-4	chr3	90266393	90266593	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_201407)	promoter-TSS (NM_201407)	-21.0	NM_201407	229541.0	Mm.30571	NM_201407	ENSMUSG00000042404	Dennd4b	-	DENN/MADD domain containing 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96483400-3	chr3	96483300	96483500	+	906.6666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31094.0	NM_001256181	329716.0	Mm.275223	NM_183223	ENSMUSG00000046317	BC107364	D730018G16	cDNA sequence BC107364	protein-coding	0.286509252103677	0.972837886854109	0.072482131582683	-0.138038788758039	-0.145619872885432	-0.124388340799367	-0.131220439402271	-0.137108064605643	-4.11194016173071	0.0584971974797999	1
Merged-chr16-4628527-2	chr16	4628427	4628627	+	926.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030205, intron 25 of 27)	intron (NM_030205, intron 25 of 27)	-3581.0	NM_025571	66449.0	Mm.354760	NM_025571	ENSMUSG00000014301	Pam16	2010110I09Rik|AV006767|CGI-136|Magmas|Tim16|Timm16	presequence translocase-asssociated motor 16 homolog (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-163745781-2	chr2	163745681	163745881	+	561.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001272052, intron 1 of 11)	MIR|SINE|MIR	4458.0	NM_007398	11486.0	Mm.388	NM_007398	ENSMUSG00000017697	Ada	-	adenosine deaminase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-58556967-1	chr18	58556867	58557067	+	554.0	f1_c57bl6.idr	intron (NM_001081072, intron 1 of 9)	intron (NM_001081072, intron 1 of 9)	727.0	NM_001081072	225579.0	Mm.258517	NM_001081072	ENSMUSG00000024600	Slc27a6	4732438L20Rik|FACVL2|FATP6|VLCS-H1	solute carrier family 27 (fatty acid transporter), member 6	protein-coding	1.02767629779601	0.969671057796817	2.16870703118732	0.683138870937833	1.61611701254495	1.51308895463902	0.700813664565569	0.685573035406456	-0.528410839256549	0.718126497681013	0.998431161219273
Merged-chr11-107472888-2	chr11	107472788	107472988	+	597.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2168.0	NM_145823	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6404288-2	chr19	6404188	6404388	+	557.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011242, intron 5 of 16)	intron (NM_011242, intron 5 of 16)	3705.0	NM_011242	19395.0	Mm.77017	NM_011242	ENSMUSG00000032946	Rasgrp2	CDC25L|Caldaggef1	RAS, guanyl releasing protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-32587655-2	chr11	32587555	32587755	+	595.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 5 of 18)	intron (NM_009288, intron 5 of 18)	54389.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-44777408-4	chr10	44777305	44777505	+	719.549988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-289809.0	NM_011156	19072.0	Mm.10281	NM_011156	ENSMUSG00000019849	Prep	AI047692|AI450383|D10Wsu136e|PEP|Pop	prolyl endopeptidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-140987726-4	chr4	140987632	140987832	+	948.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164366, intron 1 of 28)	intron (NM_001164366, intron 1 of 28)	859.0	NM_001164366	74772.0	Mm.205625	NM_029097	ENSMUSG00000036622	Atp13a2	1110012E06Rik|AA589443	ATPase type 13A2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-84635806-4	chr2	84635707	84635907	+	897.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007615, intron 1 of 19)	intron (NM_007615, intron 1 of 19)	13673.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-66981267-4	chr3	66981177	66981377	+	985.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302359)	promoter-TSS (NM_001302359)	-136.0	NM_001302359	20429.0	Mm.39093	NM_013665	ENSMUSG00000027833	Shox2	6330543G17Rik|OG12|Og12x|Prx3|SHOT	short stature homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-84341641-3	chr10	84341535	84341735	+	641.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	98836.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-77599995-1	chr4	77599895	77600095	+	629.0	f1_c57bl6.idr	intron (NM_011211, intron 3 of 39)	L1_Mus4|LINE|L1	611900.0	NM_011211	19266.0	Mm.184021	NM_011211	ENSMUSG00000028399	Ptprd	1110002J03Rik|3000002J10Rik|B230219D21Rik|R-PTP-delta	protein tyrosine phosphatase, receptor type, D	protein-coding	0.117094043776071	-0.214283140763032	-0.2181259524359	0.269720630890679	0.0229963739641165	-0.213413644171798	-0.0519172913155918	-0.220560513034528	-1.16943554456058	0.611029759072233	1
Merged-chr18-33794319-1	chr18	33794219	33794419	+	625.0	f1_c57bl6.idr	promoter-TSS (NR_038151)	promoter-TSS (NR_038151)	-573.0	NR_038152	69749.0	Mm.248787	NR_038151	ENSMUSG00000087590	Epb41l4aos	2410004N09Rik|Epb4.1l4aos	erythrocyte membrane protein band 4.1 like 4a, opposite strand	ncRNA	1.06381249780715	2.16975436514866	0.891106894124861	1.9078227476929	1.80943888641197	2.70322053257785	0.897096562795405	0.87345664478182	0.489476909792244	0.709359171586966	0.998431161219273
Merged-chr8-90824483-3	chr8	90824399	90824599	+	781.866638	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4336.0	NM_177224	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89250665-2	chr3	89250565	89250765	+	790.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_025327)	TTS (NM_025327)	4192.0	NM_001310625	66059.0	Mm.177991	NM_025327	ENSMUSG00000042747	Krtcap2	0610010I12Rik|Kcp2	keratinocyte associated protein 2	protein-coding	0.980698252342013	1.24581931740693	1.57858191033604	1.62337371351008	1.12724666991455	1.25482725113722	0.847884390382554	1.43218429537414	-0.821394259672425	0.52327247069206	0.948187958023104
Merged-chr15-34530218-4	chr15	34530110	34530310	+	902.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026340, exon 16 of 16)	exon (NM_026340, exon 16 of 16)	34899.0	NM_152894	67724.0	Mm.248779	NM_026340	ENSMUSG00000022325	Pop1	4932434G09Rik	processing of precursor 1, ribonuclease P/MRP family, (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171272188-4	chr1	171272011	171272211	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020579, intron 3 of 7)	intron (NM_020579, intron 3 of 7)	1783.0	NM_020579	57370.0	Mm.274011	NM_020579	ENSMUSG00000052423	B4galt3	9530061M23Rik|AA104562|AW125175|ESTM26|ESTM6|R74981	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 3	protein-coding	3.12637405924344	3.16260707497389	2.96576928792339	2.55301836148251	2.85209930441841	2.58897699667782	2.9882749422309	3.07740765193112	-0.151048045750761	0.81683093638747	0.998431161219273
Merged-chr17-69439358-4	chr17	69439265	69439465	+	995.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145192)	promoter-TSS (NM_001145192)	39.0	NM_001145192	320722.0	Mm.400254	NM_001145192	ENSMUSG00000091636	Akain1	A330050F15Rik	A kinase (PRKA) anchor inhibitor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-28468032-4	chr2	28467923	28468123	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166031)	promoter-TSS (NM_001166031)	-43.0	NM_080452	118451.0	Mm.294951	NM_080452	ENSMUSG00000035772	Mrps2	1500019M10Rik	mitochondrial ribosomal protein S2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153544802-2	chr2	153544702	153544902	+	568.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14831.0	NM_001134300	329540.0	Mm.50600	NM_001001986	ENSMUSG00000061411	Nol4l	4931410H15|8430427H17Rik|AI429157|Gm1636	nucleolar protein 4-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-75695375-4	chr18	75695247	75695447	+	999.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201354, intron 1 of 11)	intron (NM_201354, intron 1 of 11)	2349.0	NM_201354	269037.0	Mm.36745	NM_201354	ENSMUSG00000052928	Ctif	Gm672	CBP80/20-dependent translation initiation factor	protein-coding	4.24644783542211	3.48291422082546	4.43965008422785	3.16228042438814	3.98211262743811	3.60785634638539	3.17076629940057	3.62696426517258	-0.441874462964106	0.40584516659029	0.89095290927429
Merged-chr15-31454946-3	chr15	31454845	31455045	+	730.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_172606)	TTS (NM_172606)	-1256.0	NM_145852	252967.0	Mm.436668	NM_145852	ENSMUSG00000022236	Ropn1l	ASP|AV047578|Akapasp	ropporin 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-32395809-4	chr18	32395714	32395914	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360876, intron 1 of 17)	MTD|LTR|ERVL-MaLR	-17530.0	NR_045403	402767.0	Mm.385109	NR_045403	ENSMUSG00000097413	A830052D11Rik	-	RIKEN cDNA A830052D11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-38399644-2	chr16	38399544	38399744	+	977.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_134102, intron 9 of 10)	intron (NM_134102, intron 9 of 10)	33501.0	NM_134102	85031.0	Mm.279805	NM_134102	ENSMUSG00000002847	Pla1a	AA986889|Ps-pla1|Pspla1	phospholipase A1 member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-149407631-4	chr4	149407526	149407726	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022022, intron 1 of 26)	intron (NM_022022, intron 1 of 26)	19005.0	NM_022022	63958.0	Mm.415260	NM_022022	ENSMUSG00000028960	Ube4b	4930551I19Rik|4933406G05Rik|AU014668|D4Bwg0973e|UFD2|UFD2a|Ufd2p|mKIAA0684	ubiquitination factor E4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-113475522-1	chr2	113475422	113475622	+	617.0	f0_balb.idr	intron (NM_001285459, intron 2 of 16)	intron (NM_001285459, intron 2 of 16)	34458.0	NM_001285459	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	0.711385850254771	0.616034602658893	0.440102519022923	0.266821149017259	0.807163630761097	0.623444580736607	0.272686629670184	0.267617226258734	-0.00843895079416261	0.996339618875926	1
Merged-chr17-57031856-7	chr17	57031725	57031925	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010613)	promoter-TSS (NM_010613)	-318.0	NM_010613	16549.0	Mm.34296	NM_010613	ENSMUSG00000007670	Khsrp	6330409F21Rik|Fbp2|Fubp2|Ksrp	KH-type splicing regulatory protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-38398317-2	chr16	38398217	38398417	+	687.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134102, intron 9 of 10)	intron (NM_134102, intron 9 of 10)	34828.0	NM_134102	85031.0	Mm.279805	NM_134102	ENSMUSG00000002847	Pla1a	AA986889|Ps-pla1|Pspla1	phospholipase A1 member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88473682-2	chr3	88473582	88473782	+	737.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12500.0	NM_001163489	20351.0	Mm.439752	NM_013658	ENSMUSG00000028064	Sema4a	AI132332|SemB|Semab	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-149875564-4	chr4	149875548	149875748	+	818.116699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	79358.0	NM_029035	74646.0	Mm.30	NM_029035	ENSMUSG00000039911	Spsb1	1110014L01Rik|4930422J18Rik|AI596360|AI854583|SSB-1|SSB1	splA/ryanodine receptor domain and SOCS box containing 1	protein-coding	3.8257838598091	4.66713990182068	3.73676167655889	4.73983492067755	2.90622218617393	4.04569832187397	3.84243346038436	2.65022199404097	-1.16772755345059	0.030830997507984	0.242087897971722
Merged-chr14-55766960-1	chr14	55766860	55767060	+	978.0	f1_balb.idr	intron (NM_008519, intron 1 of 1)	B1_Mus2|SINE|Alu	998.0	NM_008519	16995.0	Mm.20853	NM_008519	ENSMUSG00000046908	Ltb4r1	BLT1|BLTR|Ltb4r|mBLTR	leukotriene B4 receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-13961746-5	chr14	13961645	13961845	+	977.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025435)	promoter-TSS (NM_025435)	107.0	NM_001359901	66231.0	Mm.295875	NM_025435	ENSMUSG00000053453	Thoc7	Nif3l1bp1	THO complex 7	protein-coding	1.66563956096713	2.46130208104095	1.33592828106901	2.59640130078428	2.20768873317157	2.87360994775489	2.27573783131627	2.20492368055497	0.665241284428533	0.472916979710034	0.926125823511231
Merged-chr10-73866131-2	chr10	73866031	73866231	+	594.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001142748, intron 1 of 25)	intron (NM_001142748, intron 1 of 25)	44264.0	NM_001142735	11994.0	Mm.338933	NM_023115	ENSMUSG00000052613	Pcdh15	BB078305|Gm9815|Ush1f|av|nmf19|roda	protocadherin 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-116436326-3	chr3	116436231	116436431	+	645.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12299.0	NM_001173553	229776.0	Mm.17647	NM_001080818	ENSMUSG00000033502	Cdc14a	A830059A17Rik|CDC14A2|CDC14a1|Cdc14	CDC14 cell division cycle 14A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-79120830-2	chr11	79120730	79120930	+	596.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013571, intron 1 of 17)	intron (NM_013571, intron 1 of 17)	25643.0	NM_013571	16706.0	Mm.4745	NM_013571	ENSMUSG00000018334	Ksr1	AW492498|B-KSR1|D11Bhm183e|D11Bhm184e|Ksr|RSU2|hb|mKSR1	kinase suppressor of ras 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-34201493-1	chr10	34201393	34201593	+	560.5	f0_balb.idr	intron (NM_172508, intron 1 of 5)	intron (NM_172508, intron 1 of 5)	6058.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-18194875-4	chr10	18194768	18194968	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195036, intron 3 of 20)	intron (NM_001195036, intron 3 of 20)	16022.0	NM_001195036	100045792.0	Mm.380617	NM_001195036	ENSMUSG00000071392	Ect2l	C330021H03Rik|Gm10331	epithelial cell transforming sequence 2 oncogene-like	protein-coding	-0.268513186977552	-0.40999557927911	-0.414850711828627	-0.418612415443708	0.557948241197485	-0.408904302350092	-0.413777904635996	-0.236511958349449	2.94776506549289	0.229431899298404	1
Merged-chr14-76097425-4	chr14	76097334	76097534	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026177, intron 6 of 7)	intron (NM_026177, intron 6 of 7)	13381.0	NM_026177	67467.0	Mm.260767	NM_026177	ENSMUSG00000022008	Gpalpp1	1200011I18Rik|Kiaa1704	GPALPP motifs containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27042477-1	chr17	27042377	27042577	+	584.0	f1_balb.idr	Intergenic	Intergenic	13218.0	NM_027544	70772.0	Mm.440437	NM_027544	ENSMUSG00000048731	Ggnbp1	0610031G08Rik|mdf	gametogenetin binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78449745-2	chr15	78449645	78449845	+	754.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355601, intron 10 of 17)	intron (NM_001355601, intron 10 of 17)	18889.0	NM_001355601	71753.0	Mm.34056	NM_027902	ENSMUSG00000016942	Tmprss6	1300008A22Rik	transmembrane serine protease 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80154920-4	chr7	80154790	80154990	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10B|LTR|ERVL	-31951.0	NM_013659	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-59780186-2	chr13	59780086	59780286	+	955.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153538, intron 26 of 27)	(T)n|Simple_repeat|Simple_repeat	10220.0	NR_015349	13996.0	Mm.490435	NR_015349		Etohd2	AW491659	ethanol decreased 2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-57605692-3	chr16	57605640	57605840	+	973.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025599, intron 1 of 9)	intron (NM_025599, intron 1 of 9)	1127.0	NM_025599	66497.0	Mm.425976	NM_025599	ENSMUSG00000022748	Cmss1	1110001A06Rik|2610528E23Rik|4930572F24Rik|AV099812|AV122629	cms small ribosomal subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-8661952-2	chr11	8661852	8662052	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 1 of 30)	intron (NM_001083587, intron 1 of 30)	2583.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-110598893-3	chr5	110598784	110598984	+	710.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198306, intron 5 of 10)	intron (NM_198306, intron 5 of 10)	-4621.0	NM_001122639	231605.0	Mm.275748	NM_198306	ENSMUSG00000033316	Galnt9	GalNAc-T9	polypeptide N-acetylgalactosaminyltransferase 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-122508605-2	chr3	122508505	122508705	+	662.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013867, intron 5 of 11)	intron (NM_013867, intron 5 of 11)	25036.0	NM_001355264	29815.0	Mm.45815	NM_013867	ENSMUSG00000028121	Bcar3	AI131758|AND-34	breast cancer anti-estrogen resistance 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6349429-2	chr19	6349329	6349529	+	583.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_117093, intron 23 of 30)	intron (NR_117093, intron 23 of 30)	2949.0	NR_105955	102465598.0		NR_105955	ENSMUSG00000099230	Mir6989	Gm27885|mmu-mir-6989	microRNA 6989	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70753312-4	chr8	70753203	70753403	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1376.0	NM_001328047	19339.0	Mm.5083	NM_009001	ENSMUSG00000031840	Rab3a	-	RAB3A, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36914060-3	chr1	36913960	36914160	+	686.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018872, intron 1 of 40)	intron (NM_018872, intron 1 of 40)	25467.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101549426-4	chr7	101549338	101549538	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	6364.0	NM_007490	11871.0	Mm.439746	NM_007490	ENSMUSG00000092517	Art2a-ps	ARTC2|Art2a|Ly92a|Rt-6|Rt6|Rt6-1	ADP-ribosyltransferase 2a, pseudogene	protein-coding	5.43682643760833	4.58334654195283	4.20166567505488	4.87773469137997	3.96771290858883	4.95125582596745	4.41539993173233	4.16801755851307	-0.554205030952781	0.180134239034047	0.652157694607876
Merged-chr5-64344487-4	chr5	64344393	64344593	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 17 of 18)	intron (NM_001289514, intron 17 of 18)	114136.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	5.78870537503863	5.88072889522528	6.25214122117491	6.01524276469393	4.82377547159326	5.01901011897459	5.4873468446883	5.21877191035161	-0.948661285049505	0.000475460633838285	0.0107094681191334
Merged-chr8-8658906-2	chr8	8658806	8659006	+	587.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010111, intron 1 of 4)	intron (NM_010111, intron 1 of 4)	1867.0	NM_010111	13642.0	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-139984676-3	chr7	139984588	139984788	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007403, intron 19 of 23)	intron (NM_007403, intron 19 of 23)	2186.0	NR_106029	102465643.0		NR_106029	ENSMUSG00000099092	Mir7062	Gm27339|mmu-mir-7062	microRNA 7062	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-84886657-2	chr2	84886557	84886757	+	895.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199223)	promoter-TSS (NM_199223)	35.0	NM_199223	269295.0	Mm.86447	NM_199223	ENSMUSG00000050896	Rtn4rl2	Ngr2|Ngrh1|Ngrl3	reticulon 4 receptor-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-31111717-4	chr8	31111650	31111850	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175136)	promoter-TSS (NM_175136)	-96.0	NM_175136	68867.0	Mm.29532	NM_175136	ENSMUSG00000039328	Rnf122	1110063C11Rik	ring finger protein 122	protein-coding	7.08419565157598	6.30585760814761	7.73193393936879	6.54465753901507	7.22742635640909	6.54760288064829	8.01193665268023	6.82776467964652	0.252605339289187	0.592302059305958	0.970206622492885
Merged-chr9-48586521-2	chr9	48586433	48586633	+	619.25	f0_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18590.0	NM_010924	18113.0	Mm.8362	NM_010924	ENSMUSG00000032271	Nnmt	-	nicotinamide N-methyltransferase	protein-coding	3.63532934665478	3.61186985074443	2.18543409473553	2.74928588377464	3.10662977462503	3.39039017539573	2.72121800255389	3.67335812419829	0.135733501865466	0.8375092102956	0.998431161219273
Merged-chr1-107502259-4	chr1	107502172	107502372	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9151.0	NM_001174170	18788.0	Mm.271870	NM_011111	ENSMUSG00000062345	Serpinb2	PAI-2|Planh2|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-68855161-2	chr11	68855061	68855261	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-2030.0	NM_023668	83431.0	Mm.31979	NM_023668	ENSMUSG00000018736	Ndel1	2600006O07Rik|MITAP1|NUDEL|mNudel	nudE neurodevelopment protein 1 like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-60908254-4	chr18	60908171	60908371	+	783.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3969.0	NM_001038499	545260.0	Mm.20147	NM_001038499	ENSMUSG00000036412	Arsi	BC020108	arylsulfatase i	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-146800691-3	chr3	146800601	146800801	+	773.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011100, intron 1 of 9)	MTD|LTR|ERVL-MaLR	12245.0	NM_011100	18749.0	Mm.16766	NM_011100	ENSMUSG00000005034	Prkacb	CbPKA|Pkacb	protein kinase, cAMP dependent, catalytic, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-31161988-2	chr6	31161888	31162088	+	616.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_110471, intron 2 of 3)	intron (NR_110471, intron 2 of 3)	56486.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-38233538-4	chr18	38233436	38233636	+	926.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16662.0	NR_015475	73516.0	Mm.48776	NR_015475	ENSMUSG00000097080	1700086O06Rik	-	RIKEN cDNA 1700086O06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-79935183-3	chr7	79935081	79935281	+	935.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027420)	promoter-TSS (NM_027420)	83.0	NM_027420	70420.0	Mm.34266	NM_027420	ENSMUSG00000039043	Arpin	2610034B18Rik	actin-related protein 2/3 complex inhibitor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102417880-4	chr12	102417768	102417968	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011175, intron 2 of 13)	intron (NM_011175, intron 2 of 13)	21945.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-118376152-2	chr5	118376052	118376252	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	130925.0	NM_001081236	76792.0	Mm.103428	NM_001081236	ENSMUSG00000032840	2410131K14Rik	-	RIKEN cDNA 2410131K14 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-32339365-2	chr13	32339265	32339465	+	876.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146041)	promoter-TSS (NM_146041)	-821.0	NM_146041	218138.0	Mm.247143	NM_146041	ENSMUSG00000038372	Gmds	BC031788|C87208	GDP-mannose 4, 6-dehydratase	protein-coding	0.421753767423809	1.47718185864634	0.462071664823118	0.447324826250079	0.425649912478707	1.49316010884978	2.13736153519408	0.449934823256649	1.7747980341584	0.58368606243466	0.966605096441162
Merged-chr1-171055354-2	chr1	171055254	171055454	+	727.099976	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356511, intron 3 of 4)	intron (NM_001356511, intron 3 of 4)	4040.0	NM_001356511	14131.0	Mm.22119	NM_010188	ENSMUSG00000059498	Fcgr3	CD16	Fc receptor, IgG, low affinity III	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-75293467-4	chr3	75293375	75293575	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23397.0	NM_026460	67931.0	Mm.259446	NM_026460	ENSMUSG00000034139	Serpini2	Spi14	serine (or cysteine) peptidase inhibitor, clade I, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-50687943-4	chr2	50687826	50688026	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-221758.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-85399273-2	chr9	85399173	85399373	+	602.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72123.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99416720-4	chr15	99416629	99416829	+	920.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23510.0	NM_001171035	110213.0	Mm.16769	NM_026669	ENSMUSG00000023010	Tmbim6	5031406P05Rik|Bi1|Tegt	transmembrane BAX inhibitor motif containing 6	protein-coding	2.15603613084385	2.43204638509619	1.16991877033342	2.36049026362881	1.89134627035695	1.84305480710495	1.61484595256995	1.38105548691462	-1.1624921821254	0.267303181296682	0.770194930470086
Merged-chr2-24975151-4	chr2	24975038	24975238	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146251)	promoter-TSS (NM_146251)	-40.0	NM_001031808	107733.0	Mm.23010	NM_001031808	ENSMUSG00000036850	Mrpl41	MRP-L27|Rpml27	mitochondrial ribosomal protein L41	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96292760-2	chr3	96292650	96292850	+	588.5	f0_balb.idr|f1_balb.idr	intron (NM_010186, intron 2 of 5)	intron (NM_010186, intron 2 of 5)	1219.0	NM_010186	14129.0	Mm.150	NM_010186	ENSMUSG00000015947	Fcgr1	AI323638|AV092959|CD64|FcgammaRI|IGGHAFC	Fc receptor, IgG, high affinity I	protein-coding	1.95122493104073	2.02670817043671	1.96284028722023	2.17298384148995	1.96641520631253	2.82561727964597	2.25114046116191	2.18382307407725	0.792556535230845	0.360097021332425	0.856327306866984
Merged-chr1-191817999-4	chr1	191817900	191818100	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3473.0	NM_010892	18005.0	Mm.33773	NM_010892	ENSMUSG00000026622	Nek2	AA617254|C77054	NIMA (never in mitosis gene a)-related expressed kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-25607974-4	chr2	25607865	25608065	+	993.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_029859)	TTS (NM_029859)	481.0	NM_001024616	227624.0	Mm.29600	NM_001024616	ENSMUSG00000015087	Rabl6	B230208H17Rik|Rbel1|Rbel1a|Rbel1b|parf	RAB, member RAS oncogene family-like 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-102494963-2	chr4	102494863	102495063	+	599.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177983, intron 2 of 5)	intron (NM_001177983, intron 2 of 5)	-75097.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-40847478-6	chr4	40847390	40847590	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022305, intron 1 of 5)	intron (NM_022305, intron 1 of 5)	2648.0	NR_039584	100628614.0		NR_039584	ENSMUSG00000096377	Mir5123	mmu-mir-5123|mu-mir-5123	microRNA 5123	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-74218491-1	chr18	74218391	74218591	+	550.0	f1_c57bl6.idr	intron (NM_028868, intron 5 of 14)	intron (NM_028868, intron 5 of 14)	2279.0	NM_028868	74322.0	Mm.17537	NM_028868	ENSMUSG00000024560	Cxxc1	2410002I16Rik|5830420C16Rik|AI426635|Cfp1|Cgbp|PHF18	CXXC finger 1 (PHD domain)	protein-coding	1.74425136260245	2.58567067759064	1.82279507712421	0.735510679296161	1.42926497439356	0.782532670920888	0.759376566614033	0.738816078784762	-2.99016513242353	0.0368392810492699	0.272613709310736
Merged-chr3-129730591-2	chr3	129730491	129730691	+	628.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010113, intron 5 of 23)	L1MC5a|LINE|L1	-5505.0	NM_001329594	13645.0	Mm.252481	NM_010113	ENSMUSG00000028017	Egf	AI790464	epidermal growth factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114982086-3	chr11	114982006	114982206	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_145437)	TTS (NM_145437)	7780.0	NM_145437	217305.0	Mm.275986	NM_145437	ENSMUSG00000034641	Cd300ld	4732429D16Rik|CLM5|Cd300ld1|LMIR4|MAIR-IV|clm-5	CD300 molecule like family member d	protein-coding	3.98552535869546	5.10772699410537	2.77293663110728	3.85757625119794	7.57817490389085	7.28430865856063	7.06483159772415	7.3552713643208	3.5138834956479	2.52723209278752e-10	4.83857403977628e-08
Merged-chr13-111941378-1	chr13	111941278	111941478	+	922.0	f0_balb.idr	Intergenic	PB1D10|SINE|Alu	73442.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-142385475-3	chr5	142385382	142385582	+	731.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-16015.0	NM_199068	17425.0	Mm.24214	NM_010812	ENSMUSG00000056493	Foxk1	A630048H08Rik|AI463295|Gm10868|Mnf	forkhead box K1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117755520-7	chr10	117755348	117755548	+	891.1904910000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134010, intron 26 of 27)	intron (NM_134010, intron 26 of 27)	-9090.0	NM_029875	215436.0	Mm.256753	NM_029875	ENSMUSG00000060181	Slc35e3	9330166G04Rik|AI481200	solute carrier family 35, member E3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-35215765-3	chr5	35215665	35215865	+	678.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62801.0	NM_007418	11553.0	Mm.57205	NM_007418	ENSMUSG00000045318	Adra2c	Adra-2c|[a]2C|alpha2-C4|alpha2C	adrenergic receptor, alpha 2c	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-115762815-3	chr3	115762699	115762899	+	878.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47744.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-121366391-4	chr14	121366269	121366469	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145465, intron 1 of 10)	intron (NM_145465, intron 1 of 10)	12861.0	NM_145465	223255.0	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-50418887-4	chr13	50418768	50418968	+	870.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_154272, intron 1 of 10)	RLTR30B_MM|LTR|ERV1	1004.0	NR_154273	109082.0	Mm.18638	NM_175401	ENSMUSG00000037816	Fbxw17	1110064L07Rik|C85886	F-box and WD-40 domain protein 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-47044444-4	chr13	47044337	47044537	+	804.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172262, intron 1 of 20)	intron (NM_172262, intron 1 of 20)	938.0	NM_172262	218214.0	Mm.31259	NM_172262	ENSMUSG00000038080	Kdm1b	4632428N09Rik|AI482520|Aof1	lysine (K)-specific demethylase 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-27336100-4	chr7	27336001	27336201	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175641, intron 1 of 32)	intron (NM_175641, intron 1 of 32)	1511.0	NM_175641	108075.0	Mm.272251	NM_175641	ENSMUSG00000040488	Ltbp4	2310046A13Rik	latent transforming growth factor beta binding protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150064436-4	chr4	150064327	150064527	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	-4027.0	NR_029751	723848.0		NR_029751	ENSMUSG00000065493	Mir34a	Mirn34a|mir-34a|mmu-mir-34a	microRNA 34a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-156147456-3	chr2	156147368	156147568	+	752.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001291114, exon 17 of 17)	3' UTR (NM_001291114, exon 17 of 17)	3235.0	NM_025946	67067.0	Mm.371623	NM_025946	ENSMUSG00000067847	Romo1	2010100O12Rik|AI853864	reactive oxygen species modulator 1	protein-coding	0.984522224424786	0.856248782923685	1.80375105464719	1.02541752801667	1.1390003804355	1.4306644353744	1.3792353383541	1.66552950604756	0.661601822973147	0.607041732850914	0.974576632476413
Merged-chr5-143909902-4	chr5	143909822	143910022	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008886)	promoter-TSS (NM_008886)	-79.0	NM_008886	18861.0	Mm.2950	NM_008886	ENSMUSG00000075569	Pms2	AW555130|Pmsl2	PMS1 homolog2, mismatch repair system component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-73065117-2	chr2	73065017	73065217	+	555.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-84671.0	NM_001018042	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-11816915-1	chr19	11816815	11817015	+	740.0	f0_balb.idr	intron (NM_011502, intron 1 of 10)	intron (NM_011502, intron 1 of 10)	2488.0	NM_001286543	20908.0	Mm.272264	NM_011502	ENSMUSG00000041488	Stx3	Syn-3	syntaxin 3	protein-coding	0.0827072709159185	0.100531030023877	0.0946970604395189	0.254985458017657	0.566258593802694	0.834168455156035	0.276933107990381	0.257979158131236	3.25027821993778	0.0960689673404989	1
Merged-chr15-87909298-1	chr15	87909198	87909398	+	612.0	f0_balb.idr	Intergenic	Intergenic	-113355.0	NR_105817	102465209.0		NR_105817	ENSMUSG00000098938	Mir6393	Gm27424|mmu-mir-6393	microRNA 6393	ncRNA	-2.18138529563533	-2.15523716995652	-2.1631445789866	-2.16963996020037	-2.05513010215571	-2.15352360143315	-2.16135451490766	-2.16847729006863	0.759018020146679	0.829933115115583	1
Merged-chr14-58319394-1	chr14	58319294	58319494	+	764.0	f0_balb.idr	Intergenic	RSINE1|SINE|B4	246708.0	NM_013518	14180.0	Mm.8846	NM_013518	ENSMUSG00000021974	Fgf9	Eks	fibroblast growth factor 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-45756745-2	chr17	45756645	45756845	+	593.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_152153, intron 2 of 4)	intron (NR_152153, intron 2 of 4)	22239.0	NR_152153	433111.0	Mm.213441	NR_152153	ENSMUSG00000097727	F630040K05Rik	-	RIKEN cDNA F630040K05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-40707687-4	chr19	40707585	40707785	+	981.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009848, intron 1 of 9)	BGLII_B2|LTR|ERVK	47915.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	2.14979498205699	2.42751389217383	1.52852938205158	2.5668936781993	2.6750586918973	2.93109908582117	1.53973078276829	1.24173621445016	0.172686302754703	0.863671812390915	0.998431161219273
Merged-chr17-34592164-4	chr17	34592047	34592247	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017463)	promoter-TSS (NM_017463)	-324.0	NM_017463	18515.0	Mm.390957	NM_017463	ENSMUSG00000034673	Pbx2	AU043397|G17	pre B cell leukemia homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128455080-2	chr10	128454980	128455180	+	621.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-3600.0	NR_106183	102465894.0		NR_106183	ENSMUSG00000098957	Mir8105	Gm27346|mmu-mir-8105	microRNA 8105	ncRNA	-1.56355737717652	-1.81244775989375	-1.82128546162293	-1.82854501295842	-1.83962066705452	-1.81053259306168	-1.81928479966835	-1.82724555674025	-1.28500227969968	0.715751224811686	1
Merged-chr6-70864471-4	chr6	70864374	70864574	+	959.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010121, intron 2 of 16)	intron (NM_010121, intron 2 of 16)	19959.0	NM_001313918	13666.0	Mm.247167	NM_010121	ENSMUSG00000031668	Eif2ak3	Pek|Perk	eukaryotic translation initiation factor 2 alpha kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-47642159-1	chr9	47642059	47642259	+	618.0	f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	111807.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	0.256878911137934	1.76667283893755	0.595493693455531	0.286121752485299	0.261362796667696	0.327996448112299	2.29696332632925	0.289082451551569	0.715253796194464	0.827119363871914	0.998431161219273
Merged-chr15-81522261-4	chr15	81522163	81522363	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55947.0	NM_019712	56438.0	Mm.29405	NM_019712	ENSMUSG00000022400	Rbx1	1500002P15Rik|AA517855|ROC1	ring-box 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120005672-2	chr11	120005572	120005772	+	610.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037755, intron 13 of 13)	intron (NM_001037755, intron 13 of 13)	-9095.0	NR_037225	100526518.0		NR_037225	ENSMUSG00000105524	Mir3065	mir-3065|mmu-mir-3065	microRNA 3065	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135667562-2	chr4	135667462	135667662	+	650.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18895.0	NM_174851	242700.0	Mm.259623	NM_174851	ENSMUSG00000062157	Ifnlr1	CRF2-12|Il28ra	interferon lambda receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-120502225-4	chr9	120502128	120502328	+	906.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9622.0	NM_026892	68969.0	Mm.28753	NM_026892	ENSMUSG00000006941	Eif1b	1500010M16Rik|3110001N14Rik|Gc20	eukaryotic translation initiation factor 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-26248184-2	chr7	26248084	26248284	+	544.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18647.0	NM_001167540	100312477.0	Mm.480246	NM_001167540	ENSMUSG00000046130	Vmn1r184	-	vomeronasal 1 receptor, 184	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-125111934-2	chr4	125111834	125112034	+	881.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_151472, exon 8 of 8)	non-coding (NR_151472, exon 8 of 8)	15947.0	NM_153159	230738.0	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-58758398-4	chr15	58758303	58758503	+	941.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	65024.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-120324448-4	chr14	120324349	120324549	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360376, intron 1 of 8)	(TCC)n|Simple_repeat|Simple_repeat	17997.0	NM_001360376	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-72070430-4	chr12	72070331	72070531	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_181752, exon 1 of 1)	exon (NM_181752, exon 1 of 1)	560.0	NM_181752	238252.0	Mm.390508	NM_181752	ENSMUSG00000043398	Gpr135	PAFR	G protein-coupled receptor 135	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-86438614-5	chr6	86438496	86438696	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001243741)	promoter-TSS (NM_001243741)	-50.0	NM_001243742	232196.0	Mm.404040	NM_146170	ENSMUSG00000046679	C87436	-	expressed sequence C87436	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-34828098-4	chr1	34828003	34828203	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160235, intron 3 of 7)	intron (NM_001160235, intron 3 of 7)	14947.0	NM_174997	214469.0	Mm.120151	NM_174997	ENSMUSG00000037503	Fam168b	Mani|mKIAA4042	family with sequence similarity 168, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-23764318-2	chr13	23764228	23764428	+	870.875	f1_balb.idr|f1_c57bl6.idr	TTS (NM_030609)	TTS (NM_030609)	660.0	NM_030609	80838.0	Mm.480242	NM_030609	ENSMUSG00000049539	Hist1h1a	H1.1|H1a|H1f1|H1var3	histone cluster 1, H1a	protein-coding	-0.106024655909337	-0.413951430444403	-0.0308740409303783	-0.418857520428924	-0.421823176089694	-0.41331941813496	-0.132911044517469	-0.418488047345758	-1.35067407192318	0.605684829477243	1
Merged-chr7-98962960-7	chr7	98962810	98963010	+	818.742859	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 12 of 14)	ORR1B1|LTR|ERVL-MaLR	124065.0	NM_001285795	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-55532593-4	chr4	55532481	55532681	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010637)	promoter-TSS (NM_010637)	-106.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53109003-2	chr4	53108903	53109103	+	938.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 6 of 49)	intron (NM_013454, intron 6 of 49)	50892.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-74305912-4	chr4	74305799	74305999	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356561, intron 4 of 20)	URR1B|DNA|hAT-Charlie	54020.0	NM_001356561	76804.0	Mm.209059	NM_144787	ENSMUSG00000028397	Kdm4c	2410141F18Rik|AA517467|Gasc1|Jmjd2c	lysine (K)-specific demethylase 4C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-182881413-2	chr1	182881313	182881513	+	595.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356462, intron 5 of 8)	intron (NM_001356462, intron 5 of 8)	-73375.0	NM_016928	53791.0	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21127061-2	chr9	21126961	21127161	+	591.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205312, intron 3 of 24)	intron (NM_001205312, intron 3 of 24)	4214.0	NM_018793	54721.0	Mm.20249	NM_018793	ENSMUSG00000032175	Tyk2	JTK1	tyrosine kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-55962925-2	chr17	55962825	55963025	+	569.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028381, intron 3 of 7)	intron (NM_028381, intron 3 of 7)	-3524.0	NR_108021	100504333.0	Mm.391908	NR_108021	ENSMUSG00000097077	Gm16712	-	predicted gene, 16712	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-177442067-4	chr1	177441974	177442174	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355101)	promoter-TSS (NM_001355101)	-277.0	NM_001355099	30928.0	Mm.330700	NM_013915	ENSMUSG00000063659	Zbtb18	RP58|Zfp238|Znf238.|zfp-238	zinc finger and BTB domain containing 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-126650569-4	chr3	126650475	126650675	+	985.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025438, intron 2 of 18)	intron (NM_001025438, intron 2 of 18)	53624.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-15305200-1	chr9	15305100	15305300	+	608.0	f0_balb.idr	intron (NM_001199484, intron 1 of 8)	intron (NM_001199484, intron 1 of 8)	967.0	NM_001199485	70984.0	Mm.261842	NM_133732	ENSMUSG00000031938	4931406C07Rik	-	RIKEN cDNA 4931406C07 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-149827194-4	chr1	149827097	149827297	+	961.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	95242.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-100110691-2	chr12	100110591	100110791	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-1640.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-44003844-4	chr10	44003760	44003960	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172393, exon 1 of 20)	exon (NM_172393, exon 1 of 20)	986.0	NM_172393	11630.0	Mm.292082	NM_172393	ENSMUSG00000019866	Crybg1	AI462491|AI463325|Aim1	crystallin beta-gamma domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-22327086-3	chr9	22326944	22327144	+	866.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C-int|LTR|ERVK	3646.0	NR_033622	625603.0	Mm.37987	NR_033622		Gm6607	EG625603	40S ribosomal protein S20 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-42419649-4	chr6	42419555	42419755	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14126.0	NM_199159	387512.0	Mm.377919	NM_199159	ENSMUSG00000056203	Tas2r135	Tas2r35|mt2r38	taste receptor, type 2, member 135	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-8641078-4	chr12	8641018	8641218	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-33016.0	NM_001160221	80913.0	Mm.341243	NM_030723	ENSMUSG00000020594	Pum2	5730503J23Rik|Pumm2	pumilio RNA-binding family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-60881082-9	chr2	60880949	60881149	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020296, intron 1 of 13)	CpG	389.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-109360959-1	chr3	109360859	109361059	+	685.0	f0_balb.idr	intron (NM_020505, intron 1 of 26)	intron (NM_020505, intron 1 of 26)	20276.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-103781708-4	chr3	103781621	103781821	+	813.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301304, intron 1 of 15)	intron (NM_001301304, intron 1 of 15)	9554.0	NM_001301306	15257.0	Mm.20827	NM_010432	ENSMUSG00000008730	Hipk1	1110062K04Rik|Myak	homeodomain interacting protein kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83440940-2	chr11	83440843	83441043	+	810.166687	f0_balb.idr|f0_c57.idr	3' UTR (NM_172797, exon 8 of 8)	3' UTR (NM_172797, exon 8 of 8)	3249.0	NM_025492	66330.0	Mm.44800	NM_025492	ENSMUSG00000035085	1700020L24Rik	-	RIKEN cDNA 1700020L24 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-23522804-3	chr10	23522706	23522906	+	823.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-172863.0	NM_010167	14051.0	Mm.332128	NM_010167	ENSMUSG00000010461	Eya4	B130023L16Rik	EYA transcriptional coactivator and phosphatase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-21220020-2	chr11	21219920	21220120	+	860.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19012.0	NM_139061	245944.0	Mm.170103	NM_139061	ENSMUSG00000020128	Vps54	Hcc8|Vps54l|mSLP8|wr	VPS54 GARP complex subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171735117-4	chr1	171735009	171735209	+	895.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32023.0	NM_013730	27218.0	Mm.103648	NM_013730	ENSMUSG00000015316	Slamf1	4933415F16|AA177906|CD150|CDw150|ESTM51|IPO-3|Slam	signaling lymphocytic activation molecule family member 1	protein-coding	3.02357197286942	1.51534170753095	3.949049907501	3.69935529281464	3.68660809177129	2.49865627713674	2.22547453257873	1.70527238916547	-0.899602962860869	0.293827249660356	0.79806957623565
Merged-chr11-85183125-1	chr11	85183025	85183225	+	563.0	f0_balb.idr	Intergenic	Intergenic	12029.0	NM_028589	73634.0	Mm.48850	NM_028589	ENSMUSG00000018479	1700125H20Rik	-	RIKEN cDNA 1700125H20 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-135163559-3	chr6	135163566	135163766	+	698.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013546, intron 1 of 3)	B3|SINE|B2	4549.0	NM_013546	15199.0	Mm.378937	NM_013546	ENSMUSG00000042770	Hebp1	Hebp|p22HBP	heme binding protein 1	protein-coding	1.35254429921156	1.7781187837117	0.931626509311455	1.54908793547222	0.901344105843209	1.79270171737738	1.47872583142536	1.55753699072727	0.11414672339004	0.92846675132097	0.998431161219273
Merged-chr6-53448434-1	chr6	53448334	53448534	+	852.3333130000001	f0_balb.idr	intron (NM_001327821, intron 5 of 10)	intron (NM_001327821, intron 5 of 10)	-124940.0	NM_172728	231991.0	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-184808822-2	chr1	184808722	184808922	+	904.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290273, intron 1 of 6)	intron (NM_001290273, intron 1 of 6)	2478.0	NM_001290273	66112.0	Mm.272457	NM_001081361	ENSMUSG00000026621	Marc1	1300013F15Rik|Mosc1	mitochondrial amidoxime reducing component 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-137025360-3	chr5	137025255	137025455	+	862.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4940.0	NM_001039385	381677.0	Mm.389697	NM_001039385	ENSMUSG00000037428	Vgf	Gm1052	VGF nerve growth factor inducible	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47295401-4	chr17	47295300	47295500	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001097623, intron 5 of 19)	intron (NM_001097623, intron 5 of 19)	65170.0	NM_172622	224829.0	Mm.260989	NM_172622		Trerf1	9430096I18Rik|AI429294|B830015H24|RAPA|Trep-132|Trep132	transcriptional regulating factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-33867054-4	chr6	33866943	33867143	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009148, intron 14 of 17)	intron (NM_009148, intron 14 of 17)	-162405.0	NM_028886	74354.0	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101258528-3	chr15	101258405	101258605	+	861.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8341.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-64489089-4	chr18	64488998	64489198	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001348055)	promoter-TSS (NM_001348055)	0.0	NM_007998	14151.0	Mm.1070	NM_007998	ENSMUSG00000024588	Fech	AI894116|Fcl|fch	ferrochelatase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-95821637-8	chr11	95821532	95821732	+	791.979187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-2868.0	NM_153104	237928.0	Mm.133075	NM_153104	ENSMUSG00000050860	Phospho1	D11Moh36|Phospo1	phosphatase, orphan 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165884006-3	chr2	165883938	165884138	+	883.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252587, intron 1 of 11)	intron (NM_001252587, intron 1 of 11)	800.0	NM_001252584	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	0.642716006813484	0.724425054183368	0.699048999008832	1.49614304047722	0.648218769175176	2.32962753419428	1.2168590234995	2.55208547495467	2.94850084085652	0.0410495018780555	0.288919783065845
Merged-chr9-52095883-1	chr9	52095783	52095983	+	554.0	f0_balb.idr	Intergenic	Intergenic	-19740.0	NR_105750	102465150.0		NR_105750	ENSMUSG00000099311	Mir6244	Gm27368|mmu-mir-6244	microRNA 6244	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26138678-4	chr17	26138613	26138813	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009733)	promoter-TSS (NM_009733)	27.0	NM_001159598	12005.0	Mm.23684	NM_009733	ENSMUSG00000024182	Axin1	AI316800|Axin|Fu|Kb|Ki|fused|kinky|knobbly	axin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-114694311-3	chr9	114694231	114694431	+	769.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146229, intron 2 of 12)	ID_B1|SINE|B4	5500.0	NM_146229	235661.0	Mm.128627	NM_146229	ENSMUSG00000032435	Dync1li1	1110053F02Rik|Dnclic1|LIC-1	dynein cytoplasmic 1 light intermediate chain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-38254177-6	chr6	38254037	38254237	+	786.444458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_194061)	promoter-TSS (NM_194061)	-128.0	NM_194061	330286.0	Mm.277163	NM_194061	ENSMUSG00000063455	D630045J12Rik	Kiaa1549|mKIAA1549	RIKEN cDNA D630045J12 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-89866690-3	chr16	89866587	89866787	+	941.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009384, intron 7 of 27)	intron (NM_009384, intron 7 of 27)	-48335.0	NM_001145887	21844.0	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-84813928-3	chr11	84813827	84814027	+	810.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_145433, exon 5 of 5)	3' UTR (NM_145433, exon 5 of 5)	5588.0	NM_145433	217038.0	Mm.280825	NM_145433	ENSMUSG00000018405	Mrm1	A530065E19Rik	mitochondrial rRNA methyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-12256028-4	chr13	12255929	12256129	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081128, intron 1 of 32)	intron (NM_001081128, intron 1 of 32)	2084.0	NM_001081128	238505.0	Mm.40335	NM_001081128	ENSMUSG00000021311	Mtr	AI894170|D830038K18Rik|MS	5-methyltetrahydrofolate-homocysteine methyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-46838294-4	chr7	46838171	46838371	+	818.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7533.0	NM_010699	16828.0	Mm.29324	NM_010699	ENSMUSG00000063229	Ldha	Ldh1|Ldhm|l7R2	lactate dehydrogenase A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-55391801-4	chr18	55391711	55391911	+	891.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-399220.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-125788493-4	chr2	125788398	125788598	+	950.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5628.0	NM_177608	70354.0	Mm.138091	NM_133725	ENSMUSG00000035093	Secisbp2l	3110001I20Rik|AI504340|C630011I23	SECIS binding protein 2-like	protein-coding	0.0116558324261647	0.247862772251656	0.0262608619445682	0.970144999441149	0.013023200601496	0.0348577154918504	0.0278147278678901	0.720284795798119	-0.851092542603751	0.695926487286538	1
Merged-chr9-108632079-1	chr9	108631979	108632179	+	551.5	f0_balb.idr	intron (NM_001357286, intron 3 of 16)	intron (NM_001357286, intron 3 of 16)	17329.0	NM_011790	23807.0	Mm.290447	NM_011790	ENSMUSG00000064145	Arih2	AI843547|ARI2|TRIAD1|UIP48	ariadne RBR E3 ubiquitin protein ligase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-117134245-4	chr5	117134191	117134391	+	934.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081308, intron 1 of 19)	intron (NM_001081308, intron 1 of 19)	703.0	NM_183306	330177.0	Mm.24343	NM_183306	ENSMUSG00000061288	Taok3	2900006A08Rik|A130052D22|A430105I05Rik	TAO kinase 3	protein-coding	0.679075639070174	0.329871298684809	0.496935563514701	0.318290939049414	0.687726753335908	0.942835222112508	0.779763945116203	0.319171793119024	1.56266535157649	0.38426638016185	1
Merged-chr1-131253875-3	chr1	131253800	131254000	+	922.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_019777)	TTS (NM_019777)	-8722.0	NM_018750	54354.0	Mm.248291	NM_018750	ENSMUSG00000026430	Rassf5	1300019G20Rik|Maxp1|Nore1|Nore1A|Nore1B|Rapl	Ras association (RalGDS/AF-6) domain family member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-111156470-2	chr8	111156370	111156570	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10972.0	NR_040364	434350.0	Mm.442061	NR_040363		9430091E24Rik	-	RIKEN cDNA 9430091E24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-25282305-4	chr17	25282202	25282402	+	953.741699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR31B2|LTR|ERVK	-7992.0	NM_011665	22196.0	Mm.240044	NM_011665	ENSMUSG00000015120	Ube2i	5830467E05Rik|UBC9|Ubce2i|Ubce9	ubiquitin-conjugating enzyme E2I	protein-coding	2.15443197557801	1.16343705694131	1.3835448415373	2.08439558837509	1.98879214265322	1.16928030219594	2.68418897422421	2.09582106523086	0.825610141942284	0.458573324294881	0.919607527898796
Merged-chr6-97867362-4	chr6	97867266	97867466	+	985.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113198, intron 1 of 9)	intron (NM_001113198, intron 1 of 9)	60308.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-58534723-3	chr13	58534604	58534804	+	637.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	76173.0	NM_022317	114304.0	Mm.18188	NM_022317	ENSMUSG00000021553	Slc28a3	Cnt3	solute carrier family 28 (sodium-coupled nucleoside transporter), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-13742646-3	chr9	13742559	13742759	+	898.455566	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6522.0	NR_024025	77116.0	Mm.210405	NM_023858	ENSMUSG00000031918	Mtmr2	6030445P13Rik	myotubularin related protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-43802240-3	chr16	43802146	43802346	+	794.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007877, intron 2 of 6)	intron (NM_007877, intron 2 of 6)	40025.0	NM_007877	13490.0	Mm.439735	NM_007877	ENSMUSG00000022705	Drd3	D3R	dopamine receptor D3	protein-coding	-1.7024385483431	-1.81249224917775	-1.82134771053534	-1.82862185015837	-1.70038292649591	-1.81057323376012	-1.81934302819017	-1.82731978264371	0.0376840119903864	0.991491645451152	1
Merged-chr11-43586552-2	chr11	43586452	43586652	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001045530, exon 6 of 6)	3' UTR (NM_001045530, exon 6 of 6)	15010.0	NM_008375	16204.0	Mm.142716	NM_008375	ENSMUSG00000020405	Fabp6	GT|I-15P|I-BABP|ILBP|ILBP3|Illbp	fatty acid binding protein 6, ileal (gastrotropin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-45388822-4	chr9	45388723	45388923	+	892.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022004, intron 1 of 7)	intron (NM_022004, intron 1 of 7)	-10886.0	NR_028499	11936.0	Mm.22742	NM_007503	ENSMUSG00000059412	Fxyd2	Atp1g1	FXYD domain-containing ion transport regulator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80346402-3	chr7	80346302	80346502	+	915.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_026812)	TTS (NM_026812)	3265.0	NM_026812	68695.0	Mm.21171	NM_026812	ENSMUSG00000030532	Hddc3	1110033O09Rik|C86475|MESH1	HD domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-13654952-1	chr11	13654852	13655052	+	593.0	f1_c57bl6.idr	Intergenic	RLTR26_Mus|LTR|ERVK	524089.0	NR_131011	75280.0	Mm.108492	NR_131011	ENSMUSG00000085452	4930554G24Rik	-	RIKEN cDNA 4930554G24 gene	ncRNA	0.914334385615287	0.408009244353734	0.206961303621109	0.738951068503309	0.194996731118451	0.214813691586747	0.208375832199715	0.63680627150908	-1.84999782688022	0.353820609617972	1
Merged-chr1-164184719-4	chr1	164184613	164184813	+	879.5750119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007976, intron 9 of 24)	intron (NM_007976, intron 9 of 24)	-32496.0	NR_037987	100503816.0	Mm.398579	NR_037987	ENSMUSG00000086593	Gm16548	-	predicted gene 16548	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-78348115-4	chr11	78348005	78348205	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011676, exon 4 of 5)	exon (NM_011676, exon 4 of 5)	1395.0	NM_001313987	22248.0	Mm.284811	NM_011676	ENSMUSG00000002058	Unc119	D11Bhm52|HRG4|MRG4|Rg4|Rtg4|Unc119h	unc-119 lipid binding chaperone	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-105988422-2	chr11	105988322	105988522	+	602.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001281819, intron 23 of 23)	intron (NM_001281819, intron 23 of 23)	-2728.0	NR_104047	100379610.0	Mm.754	NR_104047	ENSMUSG00000085297	Gm11651	-	predicted gene 11651	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-16158247-1	chr1	16158147	16158347	+	668.0	f1_balb.idr	Intergenic	MTD|LTR|ERVL-MaLR	52365.0	NM_133832	98711.0	Mm.274376	NM_133832	ENSMUSG00000025921	Rdh10	3110069K09Rik|4921506A21Rik|AI875664|AW549993|D1Ertd762e|m366Asp	retinol dehydrogenase 10 (all-trans)	protein-coding	2.04549168224871	1.300698119226	2.56523803322677	2.16271050860987	2.46306970838789	3.16197987037151	2.24765426935348	1.24121492286241	0.780622090425007	0.437612346251109	0.908612234382228
Merged-chr13-112993870-2	chr13	112993770	112993970	+	833.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001037914)	promoter-TSS (NM_001037914)	2.0	NM_001037914	622408.0	Mm.360976	NM_001037914	ENSMUSG00000074651	Mcidas	EG622408|Gm6320|Idas|Mci|Mcin	multiciliate differentiation and DNA synthesis associated cell cycle protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19683897-4	chr7	19683793	19683993	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB4|LINE|L1	-2433.0	NM_001309799	105886299.0	Mm.28394	NM_001309799	ENSMUSG00000109350	Gm44805	Apoc4-apoc2	predicted gene 44805	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-111133310-3	chr5	111133194	111133394	+	880.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001267622, intron 5 of 22)	intron (NM_001267622, intron 5 of 22)	129150.0	NR_030482	735278.0		NR_030482	ENSMUSG00000076163	Mir701	Mirn701|mir-701|mmu-mir-701	microRNA 701	ncRNA	2.16589737560934	1.91149585172871	2.27550110911448	2.20736117510398	1.26820998116881	1.77573167125145	1.11496092103014	1.31965040920347	-2.42532276948837	0.0267473868723232	0.219189809303791
Merged-chr4-133205060-4	chr4	133204919	133205119	+	949.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7517.0	NM_008154	14748.0	Mm.4721	NM_008154	ENSMUSG00000049649	Gpr3	Gpcr20|Gpcr21|Gpcr3	G-protein coupled receptor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45011338-2	chr7	45011238	45011438	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001008422, intron 6 of 10)	B1_Mus1|SINE|Alu	1149.0	NR_106021	102466218.0		NR_106021	ENSMUSG00000098839	Mir7054	Gm27557|mmu-mir-7054	microRNA 7054	ncRNA	-0.33960431090387	-0.605803199812473	-0.609699001720728	-0.612708609340272	0.20540121388823	-0.604925814857733	-0.608839265788537	-0.612182593635148	1.85767266795997	0.512731886048049	1
Merged-chr14-62840704-4	chr14	62840605	62840805	+	984.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175546, intron 1 of 11)	intron (NM_175546, intron 1 of 11)	2984.0	NR_106174	102465889.0		NR_106174	ENSMUSG00000099245	Mir8098	Gm27462|mmu-mir-8098	microRNA 8098	ncRNA	3.35370545626781	4.19910140867756	3.77842702742633	4.00879878871931	3.3101741291299	3.99890757559017	1.64796259488017	1.8700608350063	-1.20277017085904	0.0935914699671115	0.473989003707998
Merged-chr1-75217606-2	chr1	75217506	75217706	+	699.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001313723, intron 1 of 3)	intron (NM_001313723, intron 1 of 3)	1688.0	NM_001313723	22145.0	Mm.1155	NM_009447	ENSMUSG00000026202	Tuba4a	M[a]4|Tuba4	tubulin, alpha 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6260659-2	chr19	6260559	6260759	+	921.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_194348, intron 38 of 39)	intron (NM_194348, intron 38 of 39)	-3984.0	NR_029830	723957.0		NR_029830	ENSMUSG00000065582	Mir194-2	Mirn194-2|mir-194-2	microRNA 194-2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32447835-4	chr2	32447743	32447943	+	932.525024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146118, intron 1 of 10)	intron (NM_146118, intron 1 of 10)	-2614.0	NM_194335	71254.0	Mm.102341	NM_194335	ENSMUSG00000039164	Naif1	2310007O20Rik|4933440H19Rik	nuclear apoptosis inducing factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-21286296-4	chr16	21286255	21286455	+	943.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_046162, intron 1 of 4)	intron (NR_046162, intron 1 of 4)	10517.0	NR_046162	328646.0	Mm.404748	NR_046162	ENSMUSG00000096918	Gm16863	A830060N17	predicted gene, 16863	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-95417613-2	chr10	95417513	95417713	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007706)	promoter-TSS (NM_007706)	238.0	NR_045338	70523.0	Mm.158398	NR_045338	ENSMUSG00000097766	5730420D15Rik	-	RIKEN cDNA 5730420D15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-30036123-4	chr5	30036003	30036203	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16_Mm|LTR|ERVK	22989.0	NM_031168	16193.0	Mm.1019	NM_031168	ENSMUSG00000025746	Il6	Il-6	interleukin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-111103589-2	chr5	111103490	111103690	+	695.0	f0_balb.idr|f1_balb.idr	intron (NM_001267622, intron 5 of 22)	intron (NM_001267622, intron 5 of 22)	99446.0	NR_030482	735278.0		NR_030482	ENSMUSG00000076163	Mir701	Mirn701|mir-701|mmu-mir-701	microRNA 701	ncRNA	2.12313898727487	1.45775605020456	1.40032091424619	2.25876300822462	3.49679775544807	3.38277514460134	3.3450770509358	3.94428078572484	3.23335945108202	3.80884184924731e-05	0.00139893319920212
Merged-chr12-40218589-4	chr12	40218499	40218699	+	959.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013562, intron 1 of 11)	intron (NM_013562, intron 1 of 11)	4212.0	NR_035459	100316693.0		NR_035459	ENSMUSG00000089371	Mir1938	mir-1938|mmu-mir-1938	microRNA 1938	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-43218952-4	chr3	43218861	43219061	+	753.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	1476343.0	NM_027271	73852.0	Mm.29006	NM_027271	ENSMUSG00000025766	D3Ertd751e	2810009O15Rik|4930415G15Rik	DNA segment, Chr 3, ERATO Doi 751, expressed	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72896728-2	chr6	72896628	72896828	+	702.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019715, intron 1 of 6)	MER58B|DNA|hAT-Charlie	2564.0	NM_001347231	74287.0	Mm.29194	NM_019715	ENSMUSG00000055239	Kcmf1	1700094M07Rik|Debt91|Pmcf	potassium channel modulatory factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-88233343-2	chr1	88233243	88233443	+	842.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001281466, exon 7 of 42)	exon (NM_001281466, exon 7 of 42)	6323.0	NM_001281466	100040766.0	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	Heatr7b1	maestro heat-like repeat family member 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-58540066-2	chr9	58539966	58540166	+	654.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_133983, intron 1 of 6)	intron (NM_133983, intron 1 of 6)	874.0	NM_133983	102657.0	Mm.5356	NM_133983	ENSMUSG00000035914	Cd276	6030411F23Rik|AU016588|B7RP-2|B7h3	CD276 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-16244056-4	chr14	16243947	16244147	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359883)	promoter-TSS (NM_001359883)	-716.0	NM_001359883	71147.0	Mm.197960	NM_027695	ENSMUSG00000021786	Oxsm	4933425A18Rik|C80494	3-oxoacyl-ACP synthase, mitochondrial	protein-coding	5.75330033481287	6.20723514054036	6.4048010958889	5.69105580930413	5.65677009716564	6.11821999644252	5.95408742753785	5.5431349672823	-0.232586053840125	0.370967568888812	0.863911489096448
Merged-chr16-35871438-4	chr16	35871305	35871505	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039530)	promoter-TSS (NM_001039530)	-23.0	NM_001039530	547253.0	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-37356203-4	chr13	37356101	37356301	+	929.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010745, intron 1 of 4)	intron (NM_010745, intron 1 of 4)	10856.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	3.12720748252042	3.3690689931634	3.25493756381156	1.6389445135171	3.15353433120432	1.46436030131711	1.4131504568788	3.24822550504781	-0.67184044955092	0.47507509695325	0.927029054433838
Merged-chr6-115677805-2	chr6	115677705	115677905	+	865.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_152134, exon 1 of 1)	non-coding (NR_152134, exon 1 of 1)	-1170.0	NM_029780	110157.0	Mm.184163	NM_029780	ENSMUSG00000000441	Raf1	6430402F14Rik|AA990557|BB129353|Craf1|D830050J10Rik|Raf-1|c-Raf|cRaf|v-Raf	v-raf-leukemia viral oncogene 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-120572474-1	chr14	120572374	120572574	+	614.0	f0_balb.idr	Intergenic	Intergenic	94013.0	NM_029519	76108.0	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-106693145-4	chr7	106693033	106693233	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3404.0	NM_146452	258444.0	Mm.271372	NM_146452	ENSMUSG00000064223	Olfr694	MOR283-9	olfactory receptor 694	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-4771639-4	chr13	4771525	4771725	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-162461.0	NM_018859	56043.0	Mm.251908	NM_018859	ENSMUSG00000045410	Akr1e1	1810061I10Rik|Akr1e2	aldo-keto reductase family 1, member E1	protein-coding	6.79272577966289	6.92017511342819	7.03574007172822	6.41348100939668	6.9488478058887	7.32804356532734	7.17564148126658	6.63054558886699	0.246821620445517	0.220461832106401	0.711835678575402
Merged-chr2-144311862-2	chr2	144311762	144311962	+	557.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026924, intron 3 of 3)	intron (NM_026924, intron 3 of 3)	19500.0	NM_152947	107586.0	Mm.252750	NM_026924	ENSMUSG00000037279	Ovol2	1700108N11Rik|1810007D21Rik|M-OVO|M-OVO-A|M-OVO-B|MOVO|Ovo2|Zfp339|movo2	ovo like zinc finger 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-142202774-2	chr6	142202674	142202874	+	622.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F|LINE|L1	-16625.0	NM_023718	28254.0	Mm.38953	NM_023718	ENSMUSG00000079262	Slco1a6	4930422F19Rik|AI790453|Oatp-5|Oatp5|Slc21a13	solute carrier organic anion transporter family, member 1a6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-65105110-3	chr14	65104983	65105183	+	728.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6977.0	NM_001360385	54616.0	Mm.103748	NM_018788	ENSMUSG00000021978	Extl3	2900009G18Rik|AU040105|Ext1l|mKIAA0519	exostoses (multiple)-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-74393128-3	chr18	74393030	74393230	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49489.0	NM_201600	17919.0	Mm.260098	NM_008661	ENSMUSG00000025885	Myo5b	AI661750|mKIAA1119	myosin VB	protein-coding	0.490478813867746	0.857169149167005	0.806563081351507	0.22914788297449	0.222017179100305	0.242184294784457	0.702521924070344	0.230028721386107	-1.71621160245511	0.381441335863222	1
Merged-chr3-95871482-4	chr3	95871323	95871523	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040446)	promoter-TSS (NR_040446)	91.0	NM_078479	66292.0	Mm.24108	NM_078479	ENSMUSG00000054312	Mrps21	1810031B19Rik|S21mt	mitochondrial ribosomal protein S21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-16978493-4	chr11	16978376	16978576	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019549, intron 9 of 9)	intron (NM_019549, intron 9 of 9)	27066.0	NM_176982	319701.0	Mm.120672	NM_176982	ENSMUSG00000044966	Fbxo48	A630050E13Rik	F-box protein 48	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-78236896-2	chr10	78236796	78236996	+	722.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081055, intron 1 of 22)	intron (NM_001081055, intron 1 of 22)	7746.0	NM_001081055	216131.0	Mm.27539	NM_001081055	ENSMUSG00000000374	Trappc10	B230307C21Rik|Gm870|Tmem1|b2b2416Clo|b2b2613Clo	trafficking protein particle complex 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-111804358-4	chr13	111804219	111804419	+	786.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011945, intron 1 of 19)	intron (NM_011945, intron 1 of 19)	4674.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-64205136-2	chr11	64205036	64205236	+	868.1666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MD2|LINE|L1	125652.0	NR_033780	66456.0	Mm.124828	NR_033780	ENSMUSG00000087497	2810001G20Rik	AW045514	RIKEN cDNA 2810001G20 gene	ncRNA	0.472751158504313	0.0985954525868963	0.969461709575168	0.260152545048101	0.0800474112314146	0.476415832067211	0.093566638150992	0.0880161787720909	-2.3184759052459	0.262089845069304	1
Merged-chr9-65547227-2	chr9	65547090	65547290	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	32897.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	0.555325714865323	0.0928795209177262	0.0868552932744418	0.0821988748149296	0.655969163038172	0.0942358472832789	0.778936747878166	0.083012905466593	1.5250390611803	0.484994674692356	1
Merged-chr7-19303331-6	chr7	19303223	19303423	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008036, exon 4 of 4)	3' UTR (NM_008036, exon 4 of 4)	6722.0	NM_008036	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139908527-2	chr5	139908427	139908627	+	627.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175522, intron 1 of 1)	CpG	584.0	NM_175522	243312.0	Mm.237102	NM_175522	ENSMUSG00000048988	Elfn1	A930017N06Rik|AI197272|Ppp1r28	leucine rich repeat and fibronectin type III, extracellular 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-36899833-1	chr19	36899733	36899933	+	929.0	f0_c57.idr	Intergenic	(TTTTG)n|Simple_repeat|Simple_repeat	19766.0	NM_028263	72514.0	Mm.41674	NM_028263	ENSMUSG00000047632	Fgfbp3	2610306H15Rik|Fgf-bp3	fibroblast growth factor binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120470248-2	chr11	120470148	120470348	+	712.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159328, intron 4 of 21)	intron (NM_001159328, intron 4 of 21)	2613.0	NM_001159328	15239.0	Mm.7919	NM_008244	ENSMUSG00000025793	Hgs	Hgr|Hrs|ZFYVE8|tn	HGF-regulated tyrosine kinase substrate	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-11606136-1	chr19	11606036	11606236	+	817.0	f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-1332.0	NM_026835	68774.0	Mm.290390	NM_026835	ENSMUSG00000024679	Ms4a6d	1110058E16Rik|AI447446|Ms4a11	membrane-spanning 4-domains, subfamily A, member 6D	protein-coding	-0.0805726736686822	-0.335816334395503	-0.340178923166472	-0.343544278956213	-0.0740499409711582	0.401468826529435	-0.33921679010966	-0.342956387487932	2.0715915433943	0.404773111542622	1
Merged-chr7-109703697-4	chr7	109703589	109703789	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020616)	promoter-TSS (NM_020616)	-48.0	NM_020616	57373.0	Mm.334138	NM_020616	ENSMUSG00000031023	Akip1	BCA3|C11orf17|D7H11orf17|D930014E17Rik|ICRFP703B1614Q5.6|ORF27	A kinase (PRKA) interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-51890521-4	chr11	51890431	51890631	+	971.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-32901.0	NM_001357588	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-148084396-4	chr4	148084288	148084488	+	959.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301281, intron 1 of 4)	intron (NM_001301281, intron 1 of 4)	3676.0	NM_009642	11610.0	Mm.46247	NM_009642	ENSMUSG00000029007	Agtrap	3300002E14Rik|AT1R|Atrap|D4Wsu124e	angiotensin II, type I receptor-associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115279803-4	chr5	115279781	115279981	+	993.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026504, exon 1 of 7)	exon (NM_026504, exon 1 of 7)	179.0	NM_026504	52064.0	Mm.290142	NM_026504	ENSMUSG00000041733	Coq5	1810014G04Rik|D5Ertd33e	coenzyme Q5 methyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-90089623-4	chr13	90089520	90089720	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025335)	promoter-TSS (NM_025335)	-12.0	NM_028012	108138.0	Mm.37531	NM_028012	ENSMUSG00000021615	Xrcc4	2310057B22Rik|AW413319|AW545101	X-ray repair complementing defective repair in Chinese hamster cells 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-65486029-4	chr5	65485977	65486177	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133697, intron 1 of 4)	intron (NM_133697, intron 1 of 4)	6758.0	NM_133697	68552.0	Mm.10709	NM_133697	ENSMUSG00000037822	Smim14	1110003E01Rik|1700127H04Rik|5430439C17Rik|MAd4	small integral membrane protein 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-62463743-2	chr7	62463643	62463843	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_013788, exon 1 of 1)	exon (NM_013788, exon 1 of 1)	767.0	NM_013788	27412.0	Mm.422745	NM_013788	ENSMUSG00000070526	Peg12	Frat3	paternally expressed 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-25268101-2	chr8	25268001	25268201	+	576.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38169.0	NR_040352	74489.0	Mm.256468	NR_040352	ENSMUSG00000110140	5430421F17Rik	-	RIKEN cDNA 5430421F17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-88067068-2	chr5	88066968	88067168	+	619.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3A|LINE|L1	-19488.0	NM_001252679	20600.0	Mm.1397	NM_021289	ENSMUSG00000029281	Smr2	MSG2|Vcs2	submaxillary gland androgen regulated protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-110703303-5	chr12	110703180	110703380	+	966.033325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6885.0	NM_010480	15519.0	Mm.1843	NM_010480	ENSMUSG00000021270	Hsp90aa1	86kDa|89kDa|AL024080|AL024147|Hsp86-1|Hsp89|Hsp90|Hspca|hsp4	heat shock protein 90, alpha (cytosolic), class A member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-73029928-4	chr2	73029834	73030034	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A|LTR|ERVL-MaLR	-49488.0	NM_001018042	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-13027367-3	chr18	13027326	13027526	+	879.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20436.0	NM_153087	225192.0	Mm.207073	NM_153087	ENSMUSG00000037346	Hrh4	AXOR35|BG26|GPCR105|GPRv53|H4|H4R|HH4R	histamine receptor H4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-31948093-3	chr11	31948016	31948216	+	732.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17517.0	NM_026262	67592.0	Mm.78654	NM_026262	ENSMUSG00000020299	4930524B15Rik	-	RIKEN cDNA 4930524B15 gene	protein-coding	1.20783717883059	1.99122745724831	1.59493641862386	1.93919137431803	1.58021048683031	0.92607672016793	0.90939746077302	1.10270087727622	-2.00091577714145	0.117910854342544	0.538905416826286
Merged-chr11-17538451-3	chr11	17538365	17538565	+	633.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	280777.0	NM_001330649	57316.0	Mm.287982	NM_020558	ENSMUSG00000000581	C1d	1110036E10Rik|AI875855|SUN-CoR	C1D nuclear receptor co-repressor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32774796-2	chr2	32774696	32774896	+	666.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001290564, exon 2 of 15)	5' UTR (NM_001290564, exon 2 of 15)	543.0	NM_001290564	338348.0	Mm.475130	NM_177384	ENSMUSG00000039021	Ttc16	1200002K10Rik	tetratricopeptide repeat domain 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-73208346-3	chr8	73208237	73208437	+	780.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001317391, intron 3 of 15)	intron (NM_001317391, intron 3 of 15)	145203.0	NM_001317391	16795.0	Mm.324371	NM_010687	ENSMUSG00000004383	Large1	BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd	LARGE xylosyl- and glucuronyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70373999-2	chr11	70373899	70374099	+	626.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21968.0	NM_009660	11687.0	Mm.4584	NM_009660	ENSMUSG00000018924	Alox15	12-LO|12/15-LO|15-LOX|Alox12l|L-12LO	arachidonate 15-lipoxygenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27133898-4	chr17	27133792	27133992	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026063)	promoter-TSS (NM_026063)	-1.0	NM_026063	67267.0	Mm.272389	NM_026063	ENSMUSG00000024208	Uqcc2	2900010M23Rik|Cbp6|M19|Mnf1	ubiquinol-cytochrome c reductase complex assembly factor 2	protein-coding	5.48535446585815	5.05822953233489	4.55632212555672	6.33764491493116	5.36469487685233	5.29604644179461	4.97889575632712	6.29184346225273	0.0627329236850549	0.872006194543048	0.998431161219273
Merged-chr11-116531774-4	chr11	116531656	116531856	+	848.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001172475)	promoter-TSS (NM_001172475)	-155.0	NM_001172475	20698.0	Mm.20944	NM_011451	ENSMUSG00000061878	Sphk1	1110006G24Rik|Sk1|Spk1	sphingosine kinase 1	protein-coding	2.28205666153486	1.9166216597001	2.21343376536791	3.84186682647011	2.17947542337685	1.93204491683285	1.62458055055016	3.1422799947717	-0.870845728573277	0.333266703229518	0.833601405219443
Merged-chr1-172482105-4	chr1	172482002	172482202	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145800)	promoter-TSS (NM_001145800)	-111.0	NM_001145800	93842.0	Mm.214530	NM_033608	ENSMUSG00000037995	Igsf9	644ETD8|Dasm1|Kiaa1355-hp|NRT1|Ncaml|mKIAA1355	immunoglobulin superfamily, member 9	protein-coding	4.04133368800896	2.82445349449351	4.39603785301174	2.92026344379357	3.82668748804278	3.60371539423916	4.18381465868036	3.83159428987767	0.20989806876994	0.704480981756179	0.998431161219273
Merged-chr3-158961216-2	chr3	158961116	158961316	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-115148.0	NR_040750	624759.0	Mm.491054	NR_040750	ENSMUSG00000106053	Gm20752	-	predicted gene, 20752	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-89373600-4	chr15	89373443	89373643	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001271601)	TTS (NM_001271601)	275.0	NM_001111288	100126824.0	Mm.287977	NM_001111288	ENSMUSG00000091780	Sco2	-	SCO2 cytochrome c oxidase assembly protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-113026818-4	chr9	113026704	113026904	+	979.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	560348.0	NR_040760	102688.0	Mm.394901	NR_040760	ENSMUSG00000109890	AU023762	-	expressed sequence AU023762	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-114291625-4	chr7	114291579	114291779	+	945.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15563.0	NM_011965	26440.0	Mm.121265	NM_011965	ENSMUSG00000030751	Psma1	C2|HC2|Pros-30|alpha-type	proteasome (prosome, macropain) subunit, alpha type 1	protein-coding	2.07349258750429	3.23379159596245	3.78017821883375	2.62925428857406	2.09213253540078	2.95050401439969	3.31395480596678	2.64341685890456	-0.462652105309043	0.535441274155568	0.95286627222167
Merged-chr5-24995752-2	chr5	24995652	24995852	+	684.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310480)	promoter-TSS (NM_001310480)	1.0	NM_001310480	108099.0	Mm.33649	NM_145401	ENSMUSG00000028944	Prkag2	2410051C13Rik|AAKG|AAKG2|AI854673|H91620p|WPWS	protein kinase, AMP-activated, gamma 2 non-catalytic subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-32962902-3	chr9	32962833	32963033	+	844.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER126|DNA|DNA	-33967.0	NR_131058	330917.0	Mm.488283	NR_131058		Gm27162	A430016B06	predicted gene 27162	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75760859-4	chr11	75760755	75760955	+	965.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009536, intron 5 of 5)	intron (NM_009536, intron 5 of 5)	27968.0	NM_009536	22627.0	Mm.234700	NM_009536	ENSMUSG00000020849	Ywhae	AU019196	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-143316022-2	chr7	143315922	143316122	+	561.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008434, intron 11 of 15)	intron (NM_008434, intron 11 of 15)	14628.0	NR_045842	71153.0	Mm.398340	NR_045842	ENSMUSG00000101360	4933417O13Rik	-	RIKEN cDNA 4933417O13 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-49323188-2	chr13	49323088	49323288	+	603.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13980.0	NM_015759	30938.0	Mm.291089	NM_015759	ENSMUSG00000037946	Fgd3	5830461L01Rik|ZFYVE5	FYVE, RhoGEF and PH domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-131278339-4	chr6	131278232	131278432	+	986.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	14912.0	NM_001327860	66441.0	Mm.46623	NM_025564	ENSMUSG00000030188	Magohb	2010012C16Rik|Mago|Magoh|Magoh-rs1	mago homolog B, exon junction complex core component	protein-coding	3.91938165115418	3.85541061925494	3.16192832270595	4.11563188134055	3.79064755333978	3.03291759807994	4.25512358832487	4.02935047535502	0.0617409078802269	0.904191879252145	0.998431161219273
Merged-chr6-24684715-1	chr6	24684615	24684815	+	719.0	f0_balb.idr	Intergenic	Intergenic	-19720.0	NM_028459	73178.0	Mm.1574	NM_028459	ENSMUSG00000029684	Wasl	2900021I12Rik|3110031I02Rik|N-WASP	Wiskott-Aldrich syndrome-like (human)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-87698023-3	chr16	87697949	87698149	+	900.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007520)	promoter-TSS (NM_007520)	-905.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5696450-2	chr17	5696350	5696550	+	639.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 3 of 8)	intron (NM_146073, intron 3 of 8)	-102207.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-85838110-3	chr11	85837989	85838189	+	832.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009324, exon 6 of 7)	exon (NM_009324, exon 6 of 7)	5474.0	NM_009324	21385.0	Mm.287052	NM_009324	ENSMUSG00000000093	Tbx2	-	T-box 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-54575151-4	chr13	54575029	54575229	+	851.258301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_019968, exon 1 of 4)	exon (NM_019968, exon 1 of 4)	116.0	NM_019968	56795.0	Mm.89484	NM_019968	ENSMUSG00000025870	Arl10	Arl10a|Arm1	ADP-ribosylation factor-like 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-54590864-4	chr13	54590756	54590956	+	910.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178605)	promoter-TSS (NM_178605)	625.0	NM_025933	67044.0	Mm.29353	NM_025933	ENSMUSG00000025868	Higd2a	2010110M21Rik|AA690237	HIG1 domain family, member 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-121072612-4	chr7	121072510	121072710	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030691, intron 1 of 5)	intron (NM_030691, intron 1 of 5)	1920.0	NM_030691	80719.0	Mm.160384	NM_030691	ENSMUSG00000035004	Igsf6	-	immunoglobulin superfamily, member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-77538111-4	chr15	77538009	77538209	+	770.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14-int|LTR|ERV1	-4794.0	NM_175391	108956.0	Mm.86391	NM_175391	ENSMUSG00000044309	Apol7c	2210421G13Rik	apolipoprotein L 7c	protein-coding	4.82338951879022	4.96032411513701	6.01477663516894	4.98630811718113	4.10473296762932	4.47248312215589	5.18143138094553	3.57334952949307	-1.00259734555737	0.0189098104156139	0.172766579075212
Merged-chr2-71056601-2	chr2	71056501	71056701	+	934.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145524)	promoter-TSS (NM_145524)	857.0	NM_001165980	75763.0	Mm.281668	NM_198005	ENSMUSG00000041966	Dcaf17	2810055O12Rik|4833418A01Rik|A030004A10Rik|A930009G19Rik|AI448937	DDB1 and CUL4 associated factor 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-59042442-2	chr19	59042342	59042542	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114312, intron 3 of 16)	B4|SINE|B4	33627.0	NM_175172	71653.0	Mm.37338	NM_175172	ENSMUSG00000041362	Shtn1	4930506M07Rik|Shootin1|mKIAA1598	shootin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-121147054-4	chr6	121146953	121147153	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16031.0	NM_001270475	194401.0	Mm.122399	NM_153396	ENSMUSG00000051586	Mical3	C130040D16Rik|Mical-3|mKIAA1364	microtubule associated monooxygenase, calponin and LIM domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-150826171-2	chr2	150826071	150826271	+	567.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153781, intron 15 of 19)	intron (NM_153781, intron 15 of 19)	16399.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-48966148-4	chr13	48966056	48966256	+	942.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033268, intron 1 of 17)	intron (NM_001033268, intron 1 of 17)	1672.0	NM_001033268	218236.0	Mm.426571	NM_001033268	ENSMUSG00000038014	Fam120a	C9orf10|Ossa	family with sequence similarity 120, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-164497465-4	chr2	164497386	164497586	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133779)	promoter-TSS (NM_133779)	-39.0	NM_133779	78928.0	Mm.28228	NM_133779	ENSMUSG00000017721	Pigt	2510012P17Rik|4930534E15Rik|CGI-06|NDAP|Ndap7	phosphatidylinositol glycan anchor biosynthesis, class T	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-80627014-4	chr1	80626925	80627125	+	814.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175291, intron 3 of 55)	intron (NM_175291, intron 3 of 55)	38327.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-55452096-3	chr3	55451988	55452188	+	651.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357475, intron 5 of 16)	intron (NM_001357475, intron 5 of 16)	-9640.0	NM_001195539	13175.0	Mm.393242	NM_019978	ENSMUSG00000027797	Dclk1	1700113D08Rik|2810480F11Rik|AI836758|Click-I|Cpg16|Dcamkl1|Dcl|Dclk|mKIAA0369	doublecortin-like kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-78442751-2	chr9	78442651	78442851	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_173386, exon 1 of 5)	exon (NM_173386, exon 1 of 5)	486.0	NR_125721	214763.0	Mm.101559	NM_173386	ENSMUSG00000032344	Mb21d1	E330016A19Rik|cGAS	Mab-21 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128362688-2	chr10	128362588	128362788	+	595.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_026444)	TTS (NM_026444)	7349.0	NM_001081040	210582.0	Mm.296876	NM_001081040	ENSMUSG00000039914	Coq10a	Gm1	coenzyme Q10A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-87036421-2	chr1	87036321	87036521	+	571.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001172157, intron 15 of 21)	intron (NM_001172157, intron 15 of 21)	53507.0	NM_007433	11650.0	Mm.195224	NM_007433	ENSMUSG00000026246	Alppl2	Akp5|C77216|D1Ertd816e|EAP	alkaline phosphatase, placental-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80898079-2	chr10	80897979	80898179	+	679.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081688, exon 16 of 18)	exon (NM_001081688, exon 16 of 18)	2890.0	NM_013895	30055.0	Mm.142132	NM_013895	ENSMUSG00000020219	Timm13	D10Ertd378e|Tim9|Timm9	translocase of inner mitochondrial membrane 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-5787170-1	chr10	5787070	5787270	+	597.0	f1_c57bl6.idr	Intergenic	Intergenic	18295.0	NM_025995	67141.0	Mm.197520	NM_025995	ENSMUSG00000019773	Fbxo5	2510044I10Rik|C85305|Emi1|Fbxo31	F-box protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-22166910-2	chr8	22166810	22167010	+	843.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011848)	promoter-TSS (NM_011848)	-475.0	NM_011848	23954.0	Mm.41413	NM_011848	ENSMUSG00000031478	Nek3	-	NIMA (never in mitosis gene a)-related expressed kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-87806234-4	chr6	87806135	87806335	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104478, intron 1 of 2)	intron (NR_104478, intron 1 of 2)	3522.0	NM_133717	69834.0	Mm.37380	NM_133717	ENSMUSG00000030055	Rab43	1810048P08Rik|2500004H21Rik|AW490415	RAB43, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-66147538-4	chr5	66147435	66147635	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127382, intron 2 of 7)	B3A|SINE|B2	3443.0	NM_001291226	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	5.42049008047306	5.56529170211494	4.9041880436992	5.24371545556697	5.34162082017012	5.17969370499462	6.0758183105627	5.68411713100033	0.354220171951828	0.239612240916342	0.736299905431086
Merged-chr13-91132998-3	chr13	91132879	91133079	+	760.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025770, intron 3 of 7)	intron (NM_025770, intron 3 of 7)	91008.0	NM_025770	66795.0	Mm.235385	NM_025770	ENSMUSG00000021619	Atg10	5330424L23Rik|5430428K15Rik|AI852123|APG10|Agp10|Apg10l|Apg10p|Atg10l	autophagy related 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-82354358-4	chr15	82354248	82354448	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025987)	promoter-TSS (NM_025987)	-57.0	NM_025987	67130.0	Mm.27570	NM_025987	ENSMUSG00000022450	Ndufa6	14kDa|2700038D15Rik|B230217P19Rik	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 6 (B14)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-149806909-3	chr4	149806798	149806998	+	774.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32631.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	-1.31349849087795	-1.28274354783242	-1.29349452597086	-1.3023256995151	-1.3130151546297	-1.28041376602105	-0.694015972326031	-1.30074492367298	2.57396649482007	0.456321314346772	1
Merged-chr16-91357796-2	chr16	91357696	91357896	+	786.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14987.0	NM_010509	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-78397962-2	chr10	78397862	78398062	+	878.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10583.0	NR_105872	102465547.0		NR_105872	ENSMUSG00000098376	Mir6907	Gm27351|mmu-mir-6907	microRNA 6907	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-79966906-4	chr2	79966824	79967024	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355141, intron 2 of 15)	intron (NM_001355141, intron 2 of 15)	-58525.0	NM_001009978	18573.0	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-143258665-2	chr4	143258565	143258765	+	627.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40899.0	NM_010329	14726.0	Mm.2976	NM_010329	ENSMUSG00000028583	Pdpn	E11|Gp38|OTS-8|RANDAM-2|T1-alpha|T1a|T1alpha	podoplanin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44199786-3	chr9	44199689	44199889	+	866.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007619, intron 2 of 15)	intron (NM_007619, intron 2 of 15)	34257.0	NM_007619	12402.0	Mm.266871	NM_007619	ENSMUSG00000034342	Cbl	4732447J05Rik|Cbl-2|c-Cbl|cbl	Casitas B-lineage lymphoma	protein-coding	0.647095407622813	1.36558616499777	0.671665266485537	0.662517661525194	1.19830466640218	1.08983283417941	1.19481979694677	1.56353895894666	1.82214884061485	0.231617688269237	0.726079696182105
Merged-chr18-38423207-2	chr18	38423107	38423307	+	816.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355749, intron 1 of 7)	B2_Mm1a|SINE|B2	4300.0	NM_001355749	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-105504585-2	chr5	105504485	105504685	+	616.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14886.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118664662-5	chr9	118664457	118664657	+	970.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 8 of 27)	intron (NM_133721, intron 8 of 27)	-47135.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	1.03726137591558	1.62729595050581	0.891479866272642	1.73091067862345	1.33078605966321	1.64069423539338	0.895018902337122	1.83309946393312	0.3377198127759	0.795876809457456	0.998431161219273
Merged-chr2-59975915-2	chr2	59975815	59976015	+	751.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001182, intron 6 of 35)	intron (NM_001001182, intron 6 of 35)	-93309.0	NM_028118	72137.0	Mm.288734	NM_028118	ENSMUSG00000026988	Wdsub1	1700048E19Rik|2610014F08Rik	WD repeat, SAM and U-box domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-109262647-4	chr13	109262536	109262736	+	886.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011056, intron 3 of 16)	UCON26|Unknown|Unknown	-62108.0	NR_030644	100124489.0		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-29492466-3	chr17	29492315	29492515	+	951.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008842, intron 4 of 5)	intron (NM_008842, intron 4 of 5)	1370.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	2.54047415711312	2.96175858969194	3.14937661676027	2.97863486428592	2.56132636015356	2.98302029780056	3.17302986812604	2.99348284281627	0.0373887615210638	0.954361370872327	0.998431161219273
Merged-chr7-139273533-4	chr7	139273425	139273625	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25043.0	NM_001098636	101631.0	Mm.334300	NM_001033206	ENSMUSG00000060260	Pwwp2b	AI594893|D7Ertd517e|D930023J19Rik|Pwwp2	PWWP domain containing 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-62457616-2	chr14	62457516	62457716	+	590.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1327.0	NM_172810	239134.0	Mm.236557	NM_172810	ENSMUSG00000021933	Gucy1b2	B930025B03|GC-SB2	guanylate cyclase 1, soluble, beta 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-7050032-3	chr10	7049940	7050140	+	918.666626	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26855.0	NM_001033391	320495.0	Mm.331674	NM_001033391	ENSMUSG00000064065	Ipcef1	A130090K04Rik	interaction protein for cytohesin exchange factors 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-78373399-4	chr17	78373312	78373512	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015800, intron 16 of 16)	intron (NM_015800, intron 16 of 16)	44740.0	NM_001285949	225020.0	Mm.236835	NM_199448	ENSMUSG00000056121	Fez2	9030616F16|D17Ertd315e	fasciculation and elongation protein zeta 2 (zygin II)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-100116169-4	chr12	100116058	100116258	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008947, intron 5 of 9)	intron (NM_008947, intron 5 of 9)	3827.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-44511384-2	chr19	44511280	44511480	+	623.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_011720, intron 5 of 5)	intron (NM_011720, intron 5 of 5)	17908.0	NM_011720	22423.0	Mm.88365	NM_011720	ENSMUSG00000036961	Wnt8b	-	wingless-type MMTV integration site family, member 8B	protein-coding	0.436764491079146	0.851600438103811	1.28022569493035	1.03141987935444	1.15202471171423	0.467556367684855	0.458223617349203	0.450188829765902	-1.28258252105354	0.470001929767489	1
Merged-chr11-116619451-6	chr11	116619361	116619561	+	834.049988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172572, intron 1 of 18)	intron (NM_172572, intron 1 of 18)	4791.0	NM_001167680	217344.0	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-95680472-7	chr10	95680388	95680588	+	747.31427	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER21B|LTR|ERVL	-116342.0	NM_001358996	71207.0	Mm.24397	NM_027722	ENSMUSG00000020029	Nudt4	4933436C10Rik|DIPP-2|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P	nudix (nucleoside diphosphate linked moiety X)-type motif 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-12490633-3	chr4	12490529	12490729	+	823.361084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-318614.0	NM_026558	68099.0	Mm.25340	NM_026558	ENSMUSG00000028218	Fam92a	6720467C03Rik|Fam92a1	family with sequence similarity 92, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-108718014-1	chr3	108717914	108718114	+	593.0	f0_balb.idr	intron (NM_029522, intron 1 of 14)	ORR1A3|LTR|ERVL-MaLR	4285.0	NM_029522	76123.0	Mm.226941	NM_029522	ENSMUSG00000027883	Gpsm2	6230410J09Rik|LGN|Pins	G-protein signalling modulator 2 (AGS3-like, C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-37211342-2	chr10	37211242	37211442	+	649.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C|LTR|ERVK	-72416.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-146781362-4	chr3	146781262	146781462	+	982.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164200)	promoter-TSS (NM_001164200)	54.0	NM_001164200	18749.0	Mm.16766	NM_011100	ENSMUSG00000005034	Prkacb	CbPKA|Pkacb	protein kinase, cAMP dependent, catalytic, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35280324-1	chr17	35280224	35280424	+	625.0	f1_c57bl6.idr	Intergenic	Intergenic	17201.0	NM_001267808	14980.0	Mm.439675	NM_001267808		H2-L	H-2L	histocompatibility 2, D region locus L	protein-coding	1.76631069414177	1.62310306892055	1.01433519947479	2.04602464459133	1.95044938833348	1.47056788409506	1.58022537087608	1.00248766813145	-0.375548841928633	0.75786239018371	0.998431161219273
Merged-chr13-44731816-2	chr13	44731716	44731916	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001205044, exon 2 of 19)	5' UTR (NM_001205044, exon 2 of 19)	545.0	NM_001205043	16468.0	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-96393321-4	chr9	96393230	96393430	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-28899.0	NM_001357212	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-93444020-1	chr4	93443920	93444120	+	843.0	f1_balb.idr	Intergenic	Lx5|LINE|L1	-108509.0	NM_026954	69136.0	Mm.171558	NM_026954	ENSMUSG00000054000	Tusc1	2200001D17Rik|TSG-9	tumor suppressor candidate 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-25514900-2	chr9	25514800	25515000	+	708.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 2 of 7)	intron (NM_026189, intron 2 of 7)	33303.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118918935-2	chr9	118918835	118919035	+	896.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7601.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-12322159-2	chr12	12322059	12322259	+	663.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001146119, intron 2 of 11)	MTB_Mm|LTR|ERVL-MaLR	60020.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-65171554-2	chr1	65171454	65171654	+	711.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010497, intron 2 of 8)	intron (NM_010497, intron 2 of 8)	7588.0	NM_010497	15926.0	Mm.9925	NM_010497	ENSMUSG00000025950	Idh1	AI314845|AI788952|E030024J03Rik|Id-1|Idh-1|Idpc	isocitrate dehydrogenase 1 (NADP+), soluble	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-96148828-2	chr16	96148728	96148928	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_207301, intron 1 of 4)	intron (NM_207301, intron 1 of 4)	3409.0	NM_207301	71446.0	Mm.255063	NM_207301	ENSMUSG00000023147	Wrb	5530402J05Rik|C030018G21Rik|Chd5	tryptophan rich basic protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-137783423-2	chr5	137783323	137783523	+	624.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144913, intron 1 of 3)	intron (NM_144913, intron 1 of 3)	3278.0	NM_144913	231803.0	Mm.61193	NM_144913	ENSMUSG00000029726	Mepce	Bcdin3|D5Wsu46e	methylphosphate capping enzyme	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-178498102-3	chr2	178498013	178498213	+	782.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	67598.0	NM_198656	381409.0	Mm.330860	NM_198656	ENSMUSG00000039155	Cdh26	Gm1010	cadherin-like 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-113508501-4	chr13	113508420	113508620	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-5676.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-131235711-2	chr2	131235611	131235811	+	574.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144888, intron 1 of 6)	intron (NM_144888, intron 1 of 6)	1648.0	NM_144888	228607.0	Mm.287226	NM_144888	ENSMUSG00000037523	Mavs	D430028G21Rik|IPS-1|Visa|cardif	mitochondrial antiviral signaling protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-113661685-2	chr12	113661585	113661785	+	775.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	117777.0	NM_174885	238406.0	Mm.188683	NM_174885	ENSMUSG00000043945	Adam6a	Adam6|tMDCIV	a disintegrin and metallopeptidase domain 6A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-13691871-4	chr6	13691787	13691987	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13921.0	NM_175312	101148.0	Mm.354863	NM_175312	ENSMUSG00000042742	Bmt2	AI666701|B630005N14Rik	base methyltransferase of 25S rRNA 2	protein-coding	2.31151816174693	2.79742596997889	2.50113799113138	2.18993826317674	2.22099475556093	2.18477056498239	2.97714686249633	2.20073031725489	-0.0427701372898863	0.957287936346201	0.998431161219273
Merged-chr5-125348246-4	chr5	125348153	125348353	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7159.0	NM_001205083	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	3.93030299741234	3.50756032256865	4.94376988998981	3.95171009758565	4.60945888197693	4.29636512821674	4.33736459590802	4.211741808804	0.230907368497992	0.608244258025832	0.974576632476413
Merged-chr4-139086214-3	chr4	139086117	139086317	+	721.527771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008675, intron 1 of 3)	intron (NM_008675, intron 1 of 3)	6753.0	NM_008675	17965.0	Mm.9404	NM_008675	ENSMUSG00000041120	Nbl1	D4H1S1733E|DAN|Dana|NO3	neuroblastoma, suppression of tumorigenicity 1	protein-coding	2.67976707529454	3.71555282527762	3.01245903444898	1.49409040924191	2.79646141129285	2.66992765025226	2.57729952404665	3.39804450884502	-0.0833019483365556	0.916004114279579	0.998431161219273
Merged-chr17-48097155-4	chr17	48097064	48097264	+	908.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6786.0	NR_110485	320638.0	Mm.404482	NR_110485		A730006G06Rik	-	RIKEN cDNA A730006G06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129461477-4	chr4	129461371	129461571	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133889)	promoter-TSS (NM_133889)	-208.0	NM_133889	100383.0	Mm.17918	NM_133889	ENSMUSG00000040859	Bsdc1	1110063F24Rik|AW011758	BSD domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-7223846-2	chr9	7223746	7223946	+	560.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39341.0	NM_029775	76863.0	Mm.27293	NM_029775	ENSMUSG00000032002	Dcun1d5	3110001A18Rik|4833420K19Rik|AW060460|D430047L21Rik	DCN1, defective in cullin neddylation 1, domain containing 5 (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-106941816-2	chr13	106941717	106941917	+	769.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20D|LTR|ERVK	-4859.0	NM_029665	76582.0	Mm.132208	NM_029665	ENSMUSG00000042590	Ipo11	1700081H05Rik|2510001A17Rik|AI314624|AW555235|E330021B14Rik|Ranbp11	importin 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-94175815-2	chr8	94175715	94175915	+	598.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3197.0	NM_008630	17750.0	Mm.147226	NM_008630	ENSMUSG00000031762	Mt2	AA409533|MT-II|Mt-2	metallothionein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-76905023-4	chr5	76904930	76905130	+	943.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173765, intron 1 of 15)	RSINE1|SINE|B4	484.0	NM_173765	231326.0	Mm.39271	NM_173765	ENSMUSG00000055923	Aasdh	A230062G08Rik|A830035E16|Acsf4|U26	aminoadipate-semialdehyde dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-84447990-2	chr14	84447890	84448090	+	871.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001013753, exon 1 of 4)	exon (NM_001013753, exon 1 of 4)	4427.0	NM_001013753	219228.0	Mm.153643	NM_001013753	ENSMUSG00000035566	Pcdh17	C030033F14Rik|Gm78	protocadherin 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-17583858-1	chr17	17583758	17583958	+	901.0	f1_balb.idr	intron (NM_172827, intron 1 of 17)	intron (NM_172827, intron 1 of 17)	40631.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	1.2639554185835	0.592924930181613	0.57843817505144	0.567007574186965	0.907776061242196	1.71006546002485	1.72432823295112	0.569021162898463	2.15056093125011	0.182492888220873	0.656567146412251
Merged-chr12-80435844-3	chr12	80435778	80435978	+	915.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177267, intron 1 of 8)	intron (NM_177267, intron 1 of 8)	723.0	NM_177267	320808.0	Mm.220310	NM_177267	ENSMUSG00000049106	Dcaf5	9430020B07Rik|AI325023|AI430035|AI848110|AW124614|BCRG2|BCRP2|Wdr22	DDB1 and CUL4 associated factor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-34778021-3	chr14	34777927	34778127	+	804.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42109.0	NM_008166	14803.0	Mm.121569	NM_008166	ENSMUSG00000041078	Grid1	GluD1|GluRdelta1	glutamate receptor, ionotropic, delta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-114844884-2	chr9	114844784	114844984	+	966.0	f0_c57.idr|f1_c57bl6.idr	promoter-TSS (NM_027294)	promoter-TSS (NM_027294)	-732.0	NM_027294	70031.0	Mm.150064	NM_027294	ENSMUSG00000041012	Cmtm8	2700018N07Rik|AA408515|Cklfsf8	CKLF-like MARVEL transmembrane domain containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167829879-2	chr2	167829779	167829979	+	619.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-102448.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-16435064-2	chr19	16434964	16435164	+	873.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008137)	promoter-TSS (NM_008137)	-603.0	NM_008137	14675.0	Mm.313181	NM_008137	ENSMUSG00000024697	Gna14	AU023208	guanine nucleotide binding protein, alpha 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128914371-2	chr10	128914271	128914471	+	689.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358527, intron 3 of 4)	intron (NM_001358527, intron 3 of 4)	4505.0	NM_007653	12512.0	Mm.371552	NM_007653	ENSMUSG00000025351	Cd63	C75951|ME491|Tspan30	CD63 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-35855876-1	chr16	35855776	35855976	+	542.0	f1_c57bl6.idr	intron (NM_001039530, intron 6 of 16)	ID_B1|SINE|B4	15506.0	NM_001039530	547253.0	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166479108-2	chr2	166479008	166479208	+	699.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31657.0	NR_015558	319684.0	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-63422110-4	chr17	63422002	63422202	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015794, intron 4 of 8)	intron (NM_015794, intron 4 of 8)	78478.0	NM_015794	50758.0	Mm.136366	NM_015794	ENSMUSG00000023965	Fbxl17	6330576B01Rik|AI452053|BB073797|C130023C01Rik|Fbx13|Fbxo13	F-box and leucine-rich repeat protein 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-49981059-2	chr16	49980959	49981159	+	560.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045001, intron 1 of 3)	intron (NR_045001, intron 1 of 3)	599.0	NR_045001	628951.0	Mm.428032	NR_045001		Gm6936	-	predicted gene 6936	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80056576-2	chr10	80056476	80056676	+	774.75	f1_balb.idr|f1_c57bl6.idr	TTS (NM_008162)	TTS (NM_008162)	2557.0	NM_001037741	625249.0	Mm.332810	NM_008162	ENSMUSG00000075706	Gpx4	GPx-4|GSHPx-4|PHGPx|mtPHGPx|snGPx	glutathione peroxidase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-44305341-4	chr13	44305229	44305429	+	879.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-88842.0	NR_045088	100503592.0	Mm.184925	NR_045088	ENSMUSG00000113186	A330076C08Rik	-	RIKEN cDNA A330076C08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-120823304-2	chr6	120823204	120823404	+	865.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007510)	promoter-TSS (NM_007510)	-606.0	NM_007510	11973.0	Mm.29045	NM_007510	ENSMUSG00000019210	Atp6v1e1	2410029D23Rik|Atp6e|Atp6e2|Atp6v1e|D6Ertd385e|Vma4|p31	ATPase, H+ transporting, lysosomal V1 subunit E1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-38729804-4	chr16	38729715	38729915	+	979.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12444.0	NR_152434	56375.0	Mm.182377	NM_019804	ENSMUSG00000022793	B4galt4	9130402O08Rik|B4galt-IV|b4Gal-T4|beta4Gal-T4|beta4GalT-IV	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-133493696-2	chr1	133493596	133493796	+	734.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69484.0	NM_011439	20668.0	Mm.8575	NM_011439	ENSMUSG00000070643	Sox13	AA407916|AW259412|AW540933|Sox-13	SRY (sex determining region Y)-box 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43476910-2	chr4	43476834	43477034	+	892.125	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6775.0	NM_019436	54390.0	Mm.31775	NM_019436	ENSMUSG00000028460	Sit1	Sit	suppression inducing transmembrane adaptor 1	protein-coding	3.54424726612455	3.840760708734	2.27938327040501	2.52283176606851	3.35653735490368	1.63278749603897	2.9898878185812	3.08507986370102	-0.497821449092992	0.517526165647159	0.947641799425091
Merged-chr9-123940247-4	chr9	123940145	123940345	+	946.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28447.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-75174485-3	chr18	75174396	75174596	+	853.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027727, intron 13 of 16)	intron (NM_027727, intron 13 of 16)	122821.0	NR_045394	100503117.0	Mm.250517	NR_045393	ENSMUSG00000102047	2010010A06Rik	5033420E22Rik	RIKEN cDNA 2010010A06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133229905-1	chr4	133229805	133230005	+	676.0	f1_balb.idr	Intergenic	Intergenic	9096.0	NM_027152	69655.0	Mm.285685	NM_027152	ENSMUSG00000028865	Cd164l2	2310047N01Rik	CD164 sialomucin-like 2	protein-coding	2.82587477979524	1.93791753860871	2.05294411936204	2.76087173432961	2.28705585075916	2.29796164519143	1.67966465402394	2.92260675503504	-0.184611714908141	0.830506980516947	0.998431161219273
Merged-chr13-42103801-4	chr13	42103721	42103921	+	964.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007772, intron 2 of 8)	intron (NM_007772, intron 2 of 8)	51800.0	NM_007772	110521.0	Mm.4808	NM_007772	ENSMUSG00000021366	Hivep1	Cryabp1	human immunodeficiency virus type I enhancer binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-88743564-4	chr15	88743451	88743651	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MDa|LINE|L1	-8160.0	NM_181412	223773.0	Mm.396622	NM_181412	ENSMUSG00000034333	Zbed4	1700009F06Rik	zinc finger, BED type containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16310200-4	chr7	16310105	16310305	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133234, intron 1 of 3)	CpG	622.0	NM_133234	170770.0	Mm.7660	NM_133234	ENSMUSG00000002083	Bbc3	PUMA|PUMA/JFY1	BCL2 binding component 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-147423728-2	chr4	147423628	147423828	+	865.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039209, intron 1 of 2)	B4A|SINE|B4	-129549.0	NM_001014397	433804.0	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154	zinc finger protein 985	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-149241186-4	chr5	149241133	149241333	+	957.3875119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23771.0	NM_001308462	11690.0	Mm.19844	NM_009663	ENSMUSG00000060063	Alox5ap	Flap	arachidonate 5-lipoxygenase activating protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-72836501-4	chr17	72836374	72836574	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027166)	promoter-TSS (NM_027166)	-154.0	NM_027166	383295.0	Mm.277533	NM_027166	ENSMUSG00000039770	Ypel5	2310076K21Rik|CGI-127	yippee like 5	protein-coding	5.60208380446888	4.22561094567588	6.52178860642892	4.98542767275156	5.31695477581572	5.23215753868205	5.25628111065057	4.68208686976425	-0.51431560500209	0.208957911545992	0.698371420334047
Merged-chr1-79669783-3	chr1	79669666	79669866	+	989.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183027, intron 1 of 4)	intron (NM_183027, intron 1 of 4)	2206.0	NM_183027	252903.0	Mm.32409	NM_183027	ENSMUSG00000054702	Ap1s3	1190009B22|Jr2|[s]3A	adaptor-related protein complex AP-1, sigma 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-106556713-4	chr3	106556658	106556858	+	841.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025582, intron 3 of 6)	Lx3A|LINE|L1	-8956.0	NM_133869	99712.0	Mm.429443	NM_133869	ENSMUSG00000040774	Cept1	9930118K05Rik|mCEPT1	choline/ethanolaminephosphotransferase 1	protein-coding	1.05959057322081	2.02316022533329	0.907456400561003	1.10704223929113	2.08650113759468	1.54774732380069	1.14239983449467	1.57527233269692	0.866742160764773	0.485714264617346	0.932316512405969
Merged-chr7-25606681-2	chr7	25606581	25606781	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9211.0	NM_001039243	632778.0	Mm.423112	NM_001039243	ENSMUSG00000074261	Erich4	EG632778|Gm7092|Kseg1	glutamate rich 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-168229527-8	chr2	168229445	168229645	+	949.212524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132310, intron 1 of 11)	intron (NR_132310, intron 1 of 11)	834.0	NM_010072	13480.0	Mm.422657	NM_010072	ENSMUSG00000078919	Dpm1	AI118379|AI194292	dolichol-phosphate (beta-D) mannosyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-4135227-4	chr11	4135153	4135353	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027859)	promoter-TSS (NM_027859)	93.0	NM_027859	71673.0	Mm.240586	NM_027859	ENSMUSG00000003581	Rnf215	0610009J22Rik|AW557025|C77903	ring finger protein 215	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-132106213-2	chr2	132106113	132106313	+	613.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355430, intron 1 of 15)	intron (NM_001355430, intron 1 of 15)	38895.0	NM_001355431	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-34714400-3	chr12	34714308	34714508	+	955.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271386, intron 3 of 27)	intron (NM_001271386, intron 3 of 27)	-185519.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	1.48344368740217	1.43735388338322	0.897083819188664	1.46511668937016	1.29339562462229	1.29899955655085	1.0954437465532	1.57699260437028	-0.0687162652519181	0.956157411643743	0.998431161219273
Merged-chr16-94544773-5	chr16	94544691	94544891	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18162.0	NM_007834	13185.0	Mm.7472	NM_007834	ENSMUSG00000022898	Dscr3	AW538125|Dcra	DSCR3 arrestin fold containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-64771852-2	chr9	64771752	64771952	+	997.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-34096.0	NM_017382	53869.0	Mm.1387	NM_017382	ENSMUSG00000004771	Rab11a	-	RAB11A, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-69923006-1	chr8	69922906	69923106	+	1000.0	f1_c57bl6.idr	intron (NM_001286450, intron 3 of 12)	intron (NM_001286450, intron 3 of 12)	-20448.0	NM_023312	67184.0	Mm.21162	NM_023312	ENSMUSG00000036199	Ndufa13	2700054G14Rik|AU022060|CDA016|CGI-39|GRIM-19|Grim19	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 13	protein-coding	-0.339876280363593	0.16357026854906	-0.331121707325168	-0.334414835536848	-0.19343501608748	-0.325886062025346	-0.330179838345683	0.299055486233631	0.721041640545245	0.771816559692376	1
Merged-chr13-99093513-4	chr13	99093408	99093608	+	801.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5587.0	NR_045495	69603.0	Mm.390632	NR_045495	ENSMUSG00000100410	2310020H05Rik	-	RIKEN cDNA 2310020H05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-104467978-3	chr14	104467881	104468081	+	762.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011143)	promoter-TSS (NM_011143)	18.0	NM_011143	18996.0	Mm.246550	NM_011143	ENSMUSG00000048349	Pou4f1	Brn-3|Brn-3.0|Brn3|Brn3.0|Brn3a|E130119J07Rik	POU domain, class 4, transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3423174-4	chr19	3423077	3423277	+	916.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8633.0	NM_010253	14419.0	Mm.4655	NM_010253	ENSMUSG00000024907	Gal	Galn	galanin	protein-coding	1.07401442093553	0.737583551049085	0.71601185360367	1.90061870676033	0.673363053606075	0.742331554709212	2.37901717110083	1.8181979601343	1.16327740521683	0.432003288775678	0.904679012727573
Merged-chr16-84879312-3	chr16	84879205	84879405	+	629.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43680.0	NM_001302213	11957.0	Mm.353	NM_016755	ENSMUSG00000022890	Atp5j	CF6	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F	protein-coding	2.25894481420687	1.13800871939779	2.53555611712084	1.92812287029772	1.94446426051506	1.61352166050673	1.11911406463011	1.6762806737223	-1.22517770814967	0.272587321992915	0.775735931990275
Merged-chr17-71206259-4	chr17	71206153	71206353	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164885, intron 1 of 19)	intron (NM_001164885, intron 1 of 19)	1599.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-13172448-4	chr15	13172349	13172549	+	917.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007666, intron 1 of 11)	intron (NM_007666, intron 1 of 11)	1226.0	NM_007666	12563.0	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-10711635-2	chr8	10711535	10711735	+	654.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	170819.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-9881954-1	chr3	9881854	9882054	+	857.0	f1_c57bl6.idr	Intergenic	Intergenic	-48275.0	NM_001195031	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	0.68134349462459	0.357650639476005	0.344238485177374	1.73735771473788	1.49786214711576	0.360625076521346	0.347227868208143	0.335504476570334	-0.667381120604991	0.835945830614085	0.998431161219273
Merged-chr5-32159889-1	chr5	32159789	32159989	+	546.0	f0_c57.idr	Intergenic	Intergenic	23417.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-45738083-4	chr16	45737957	45738157	+	848.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_073572, intron 1 of 4)	intron (NR_073572, intron 1 of 4)	4898.0	NM_001272070	213012.0	Mm.247453	NM_172511	ENSMUSG00000033157	Abhd10	-	abhydrolase domain containing 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-113144725-3	chr12	113144672	113144872	+	904.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024223, intron 5 of 6)	intron (NM_024223, intron 5 of 6)	4167.0	NM_001347443	68337.0	Mm.133825	NM_024223	ENSMUSG00000006356	Crip2	0610010I23Rik|AW743261|C77570|CRP2|CRP4|Crp|ESP1|Hlp	cysteine rich protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-112363349-4	chr13	112363224	112363424	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168403, intron 8 of 11)	intron (NM_001168403, intron 8 of 11)	74806.0	NM_001168404	77318.0	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	3.613732445354	3.43139159955773	3.91368965994384	3.31553982117705	4.37723650458672	3.84440884031618	4.30082912051993	4.45400657982603	0.951931021764525	0.037997322151212	0.277194084619117
Merged-chr9-63739923-2	chr9	63739823	63740023	+	704.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016769, intron 1 of 8)	intron (NM_016769, intron 1 of 8)	18071.0	NM_016769	17127.0	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-46575040-4	chr4	46574938	46575138	+	989.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164804, intron 1 of 11)	intron (NM_001164804, intron 1 of 11)	-8598.0	NM_178893	107684.0	Mm.416311	NM_178893	ENSMUSG00000028337	Coro2a	9030208C03Rik|AI563590|IR10	coronin, actin binding protein 2A	protein-coding	0.92849535149011	2.1942414508934	1.88910754714831	0.962458932097132	1.62149640890314	1.9801372620639	2.39672840356445	0.965922135540498	0.596008418152049	0.640341914425004	0.982599433509505
Merged-chr15-102978845-1	chr15	102978745	102978945	+	656.0	f0_balb.idr	intron (NM_008272, intron 1 of 2)	intron (NM_008272, intron 1 of 2)	1813.0	NM_008272	15427.0	Mm.4765	NM_008272	ENSMUSG00000036139	Hoxc9	Hox-3.2	homeobox C9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-100848870-4	chr13	100848758	100848958	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15431.0	NM_022885	69048.0	Mm.402215	NM_022885	ENSMUSG00000021629	Slc30a5	1810010K08Rik|AF233321|ZNT5|ZTL1|ZnT-5|Zntl1	solute carrier family 30 (zinc transporter), member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-95845275-4	chr9	95845179	95845379	+	994.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033210)	promoter-TSS (NM_001033210)	0.0	NM_001033210	102502.0	Mm.11869	NM_001033210	ENSMUSG00000049493	Pls1	AI427122	plastin 1 (I-isoform)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-73746700-4	chr18	73746587	73746787	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053255, intron 2 of 3)	intron (NM_053255, intron 2 of 3)	7792.0	NM_053255	114615.0	Mm.50642	NM_053255	ENSMUSG00000036941	Elac1	2610018O07Rik|8430417G19Rik	elaC ribonuclease Z 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-21402652-4	chr13	21402552	21402752	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145778, intron 1 of 5)	CpG	103.0	NM_001145778	72739.0	Mm.296071	NM_023685	ENSMUSG00000021327	Zkscan3	2810435N07Rik|AA408594|AI132359|Skz1|Zf47|Zfp-47|Zfp306|Zfp307|mszf35	zinc finger with KRAB and SCAN domains 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-33463540-2	chr18	33463440	33463640	+	761.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045415)	promoter-TSS (NR_045415)	94.0	NM_001267717	27528.0	Mm.407415	NM_053078	ENSMUSG00000042834	Nrep	AI325076|D0H4S114|Harp|P311|PTZ17|SEZ17	neuronal regeneration related protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135762632-4	chr4	135762511	135762711	+	932.44165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001085509, exon 2 of 37)	exon (NM_001085509, exon 2 of 37)	2896.0	NM_001085509	242702.0	Mm.318639	NM_001085509	ENSMUSG00000037139	Myom3	8430427K15Rik|Gm434	myomesin family, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-116121879-1	chr9	116121779	116121979	+	911.0	f1_balb.idr	intron (NM_029575, intron 3 of 6)	intron (NM_029575, intron 3 of 6)	53484.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	0.0421664687614235	-0.201168531339991	-0.205519188797529	-0.208867689948018	0.25090832534583	-0.200186171048888	-0.204560648900436	0.407415153093636	2.15984120827921	0.375075401873592	1
Merged-chr11-108263530-2	chr11	108263430	108263630	+	717.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_011101, intron 2 of 16)	intron (NM_011101, intron 2 of 16)	80358.0	NM_011101	18750.0	Mm.222178	NM_011101	ENSMUSG00000050965	Prkca	AI875142|Pkca	protein kinase C, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-63121985-4	chr14	63121891	63122091	+	934.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007798)	promoter-TSS (NM_007798)	-471.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129696097-3	chr4	129696025	129696225	+	646.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356378, intron 1 of 9)	intron (NM_001356378, intron 1 of 9)	720.0	NM_199305	230770.0	Mm.257157	NM_199305	ENSMUSG00000053730	Tmem39b	6330509E05Rik|BC037095	transmembrane protein 39b	protein-coding	1.06166338613048	1.89048106990103	1.59644406970723	0.903670473458862	1.2235742746889	1.52964865540723	1.13932035779512	1.94832397416057	0.253093674479085	0.838875792646354	0.998431161219273
Merged-chr3-41082034-4	chr3	41081930	41082130	+	671.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027558, intron 1 of 2)	intron (NM_027558, intron 1 of 2)	1016.0	NM_027558	70804.0	Mm.40321	NM_027558	ENSMUSG00000049940	Pgrmc2	4631434O19Rik|5730409G06Rik|DG6|PMBP	progesterone receptor membrane component 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-58127447-3	chr13	58127354	58127554	+	918.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029872, exon 1 of 1)	exon (NM_029872, exon 1 of 1)	1102.0	NM_029872	77134.0	Mm.490274	NM_029872	ENSMUSG00000007836	Hnrnpa0	1110055B05Rik|3010025E17Rik|Hnrpa0|hnRNP A0	heterogeneous nuclear ribonucleoprotein A0	protein-coding	0.625761182045732	-0.122975503715359	-0.128938040036627	-0.133562742664288	0.712844143736416	-0.121636256673159	-0.127619930998738	-0.132753245693561	0.230644821894239	0.925023423301546	1
Merged-chr10-94638790-4	chr10	94638690	94638890	+	926.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49823.0	NR_015524	67723.0	Mm.116284	NR_015524		Cep83os	4932415G12Rik|Ccdc41os1	centrosomal protein 83, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-34879758-1	chr19	34879658	34879858	+	751.0	f0_balb.idr	promoter-TSS (NM_001114339)	promoter-TSS (NM_001114339)	-303.0	NM_001114339	75735.0	Mm.24742	NM_023792	ENSMUSG00000033610	Pank1	Pank|Pank1b	pantothenate kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-26911340-1	chr2	26911240	26911440	+	1000.0	f0_balb.idr	promoter-TSS (NM_011513)	promoter-TSS (NM_011513)	533.0	NM_013721	27176.0	Mm.328601	NM_013721	ENSMUSG00000062647	Rpl7a	Surf3	ribosomal protein L7A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-43515250-1	chr18	43515150	43515350	+	572.0	f0_balb.idr	Intergenic	Intergenic	-76964.0	NM_001291455	22240.0	Mm.8180	NM_009468	ENSMUSG00000024501	Dpysl3	CRMP-4|DRP-3|TUC4|ULIP-1|Ulip|Ulip1	dihydropyrimidinase-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166979251-4	chr2	166979131	166979331	+	992.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109905, intron 1 of 11)	RSINE1|SINE|B4	-14514.0	NR_111895	20853.0	Mm.73276	NM_011490	ENSMUSG00000039536	Stau1	5830401L18Rik|AW549911|C85792|Stau	staufen double-stranded RNA binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81179467-2	chr10	81179367	81179567	+	574.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_028549)	TTS (NR_028549)	506.0	NR_028549	100217454.0		NR_028549	ENSMUSG00000064441	Snord37	MBII-376	small nucleolar RNA, C/D box 37	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-34811830-3	chr7	34811709	34811909	+	672.033325	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175140, intron 1 of 3)	CpG	902.0	NM_175140	68947.0	Mm.29380	NM_175140	ENSMUSG00000060402	Chst8	1500011J21Rik|AI426009	carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-69536044-3	chr13	69535914	69536114	+	884.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-2150.0	NM_001169131	210106.0	Mm.315959	NM_198600	ENSMUSG00000034575	Papd7	LAK-1|POLK|Pols|TRF4|TRF4-1	PAP associated domain containing 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101295411-2	chr7	101295311	101295511	+	545.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_152152, intron 7 of 16)	intron (NR_152152, intron 7 of 16)	6677.0	NM_001111111	73683.0	Mm.275744	NM_001111111	ENSMUSG00000047767	Atg16l2	2410118P20Rik	autophagy related 16-like 2 (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71249111-1	chr17	71249011	71249211	+	675.0	f1_balb.idr	3' UTR (NM_001164885, exon 20 of 20)	3' UTR (NM_001164885, exon 20 of 20)	44457.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	0.218751451541881	0.23690463388331	0.230947928033675	0.744067023820725	0.687699228946273	0.238248698328306	0.554686013729071	0.750915514571261	1.28779260760063	0.513340070008258	1
Merged-chr2-31061382-2	chr2	31061282	31061482	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355105, intron 6 of 15)	intron (NM_001355105, intron 6 of 15)	35118.0	NM_001177650	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-92837380-4	chr7	92837261	92837461	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_029494)	TTS (NM_029494)	36886.0	NM_001355126	74041.0	Mm.26468	NM_028729	ENSMUSG00000030641	Ddias	4632434I11Rik|noxin	DNA damage-induced apoptosis suppressor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-52630394-4	chr3	52630273	52630473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-109351.0	NR_038079	329639.0	Mm.131245	NR_038079	ENSMUSG00000102785	Gm2447	100039832|A530017F20	predicted gene 2447	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124779821-3	chr6	124779706	124779906	+	888.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302555)	promoter-TSS (NM_001302555)	-79.0	NM_001302555	16977.0	Mm.3207	NM_013588	ENSMUSG00000030125	Lrrc23	4921537K05Rik|B7|Lrpb7	leucine rich repeat containing 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102740480-2	chr12	102740380	102740580	+	929.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001142939, exon 2 of 2)	3' UTR (NM_001142939, exon 2 of 2)	3181.0	NM_001142937	64113.0	Mm.291222	NM_022323	ENSMUSG00000096458	Moap1	AA987038|Map-1|Pnma4	modulator of apoptosis 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-34908845-2	chr6	34908745	34908945	+	967.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013366, intron 2 of 14)	ID_B1|SINE|B4	1986.0	NM_001013366	101240.0	Mm.152120	NM_001013366	ENSMUSG00000058486	Wdr91	9530020G05Rik|AI987683|AU018665	WD repeat domain 91	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-110386247-6	chr5	110386060	110386260	+	987.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142642, intron 5 of 18)	intron (NM_001142642, intron 5 of 18)	967.0	NM_028596	381668.0	Mm.348782	NM_028596	ENSMUSG00000043323	Fbrsl1	2410025L10Rik|AI467568|Gm1049|Gm29766|mKIAA1545	fibrosin-like 1	protein-coding	1.82913622584146	0.996602870150716	2.1121761473466	1.19260406497526	2.33042486810435	1.0021038904175	0.977202229612495	2.46177032201471	0.718859971784863	0.575243428206376	0.965286201225318
Merged-chr10-78148142-4	chr10	78148023	78148223	+	978.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TC)n|Simple_repeat|Simple_repeat	21645.0	NM_138601	28295.0	Mm.268691	NM_138601	ENSMUSG00000053329	D10Jhu81e	C21orf33|ES1	DNA segment, Chr 10, Johns Hopkins University 81 expressed	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-28315711-3	chr5	28315561	28315761	+	865.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR87|LTR|ERVL?	-1528.0	NM_028234	381626.0	Mm.304075	NM_028234	ENSMUSG00000048271	Rbm33	3200001K10Rik|6430512A10Rik|AA386890|Prr8	RNA binding motif protein 33	protein-coding	2.59741103652219	4.22128552765199	1.62496145734705	3.0977224765704	3.7204325939374	4.24990261802971	3.31702649447076	2.89710572802642	0.640374762241666	0.379868765485318	0.871899780487614
Merged-chr13-101548075-4	chr13	101547977	101548177	+	879.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR33B|LTR|ERVL	144553.0	NM_001024955	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-72418069-2	chr8	72417971	72418171	+	689.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001122832, intron 1 of 15)	B3|SINE|B2	3403.0	NM_001122832	13859.0	Mm.288894	NM_007944	ENSMUSG00000006276	Eps15l1	9830147J04Rik|AI593686|Eps15-rs|Eps15R	epidermal growth factor receptor pathway substrate 15-like 1	protein-coding	1.05144318452733	0.418265030575924	0.412541619045401	0.40815962056184	0.64951194682067	0.419561946805158	1.03637287708863	0.805863001813453	0.795195854988449	0.667741278372989	1
Merged-chr9-26806521-4	chr9	26806412	26806612	+	977.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310768)	promoter-TSS (NM_001310768)	-44.0	NM_153803	244757.0	Mm.293696	NM_153803	ENSMUSG00000036395	Glb1l2	-	galactosidase, beta 1-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140746568-2	chr5	140746468	140746668	+	697.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_173405, intron 4 of 7)	intron (NM_173405, intron 4 of 7)	22441.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-32284767-4	chr17	32284692	32284892	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198094)	promoter-TSS (NM_198094)	-659.0	NM_020508	57261.0	Mm.253518	NM_020508	ENSMUSG00000024002	Brd4	Brd5|HUNK1|MCAP|WI-11513	bromodomain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-39384256-3	chr6	39384146	39384346	+	887.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011226, intron 2 of 3)	intron (NM_011226, intron 2 of 3)	2893.0	NM_011226	19331.0	Mm.123866	NM_011226	ENSMUSG00000029923	Rab19	-	RAB19, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67123937-4	chr10	67123826	67124026	+	898.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3332.0	NM_207221	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-8880230-2	chr10	8880109	8880309	+	928.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 1 of 19)	B1F|SINE|Alu	5861.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	1.44424431294396	1.6174271510283	1.11076129951379	2.4255376364794	2.51308294020306	1.96880014311365	1.11670943931184	2.27330403696125	0.792931079401997	0.484688992724074	0.931503676591975
Merged-chr5-43800737-1	chr5	43800637	43800837	+	552.0	f1_balb.idr	Intergenic	Lx8b|LINE|L1	-18156.0	NM_009763	12182.0	Mm.246332	NM_009763	ENSMUSG00000029082	Bst1	114/A10|A530073F09|BP-3|Bp3|Bsta1|CD157|Ly65	bone marrow stromal cell antigen 1	protein-coding	0.721433690378609	0.152709533439601	0.145917225311335	0.140653760066489	0.640553466094926	0.154236162511676	0.955819603225329	0.141574770623567	1.25004862141698	0.555064586779698	1
Merged-chr1-172004608-3	chr1	172004479	172004679	+	953.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_033509, exon 8 of 8)	3' UTR (NM_033509, exon 8 of 8)	22716.0	NM_033509	93840.0	Mm.36148	NM_033509	ENSMUSG00000026556	Vangl2	C530001F03Rik|Lootl|Lp|Lpp1|Ltap|Vang1l2|loop-tail|ska17|ska<m17Jus>|stbm|strabismus	VANGL planar cell polarity 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33571278-2	chr16	33571178	33571378	+	665.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083902, intron 4 of 11)	ORR1A2-int|LTR|ERVL-MaLR	52683.0	NM_001083902	171286.0	Mm.35253	NM_134251	ENSMUSG00000035506	Slc12a8	CCC9|E330020C02Rik	solute carrier family 12 (potassium/chloride transporters), member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-103578995-4	chr2	103578898	103579098	+	928.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178890, intron 1 of 16)	L2b|LINE|L2	12688.0	NM_178890	99382.0	Mm.35850	NM_178890	ENSMUSG00000032724	Abtb2	AW539457|BPOZ-2	ankyrin repeat and BTB (POZ) domain containing 2	protein-coding	1.98839081580114	2.71064225157301	3.07591578682715	2.09544942629747	2.51716053412561	2.08730334628314	2.0186967236821	1.58342761566751	-1.00275895714421	0.253778435519476	0.751694505775946
Merged-chr12-70347436-4	chr12	70347329	70347529	+	811.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001286387, exon 1 of 14)	5' UTR (NM_001286387, exon 1 of 14)	185.0	NM_001286386	94090.0	Mm.184012	NM_053167	ENSMUSG00000021071	Trim9	-	tripartite motif-containing 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-63417503-4	chr4	63417392	63417592	+	895.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001008791, intron 10 of 12)	intron (NM_001008791, intron 10 of 12)	-14047.0	NM_001045514	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167780785-2	chr2	167780685	167780885	+	739.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	89608.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102295490-1	chr12	102295390	102295590	+	768.0	f1_balb.idr	intron (NM_001161365, intron 1 of 9)	intron (NM_001161365, intron 1 of 9)	11849.0	NM_001161365	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	0.936383177077913	0.449175322302739	0.432973651924958	0.420091245537958	1.6395150232443	0.452754816369523	0.436593642340481	2.02474518825495	3.0819522617422	0.079688877957434	0.429260920861999
Merged-chr13-52822382-4	chr13	52822307	52822507	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65202.0	NR_027893	105404.0	Mm.184173	NR_027893		BB123696	-	expressed sequence BB123696	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139299331-2	chr5	139299231	139299431	+	704.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_172723, intron 3 of 10)	intron (NM_172723, intron 3 of 10)	26133.0	NM_172723	231821.0	Mm.297819	NM_172723	ENSMUSG00000056413	Adap1	4930431P11Rik|Centa1|GC1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-102395224-4	chr15	102395139	102395339	+	812.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11077.0	NM_013672	20683.0	Mm.4618	NM_013672	ENSMUSG00000001280	Sp1	1110003E12Rik|AA450830|AI845540|Sp1-1	trans-acting transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-113437765-4	chr13	113437641	113437841	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	65103.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65983021-3	chr9	65982906	65983106	+	871.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173185, intron 5 of 13)	intron (NM_173185, intron 5 of 13)	73996.0	NM_173185	214897.0	Mm.325816	NM_173185	ENSMUSG00000032384	Csnk1g1	9130020E21Rik	casein kinase 1, gamma 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-30520249-4	chr15	30520148	30520348	+	989.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355502, intron 3 of 21)	intron (NM_001355502, intron 3 of 21)	347655.0	NM_008729	18163.0	Mm.321648	NM_008729	ENSMUSG00000022240	Ctnnd2	Catnd2|Nprap|neurojugin	catenin (cadherin associated protein), delta 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-61098345-4	chr18	61098261	61098461	+	767.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME3B|LINE|L1	-7211.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-132805041-3	chr7	132804946	132805146	+	748.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_212473, intron 1 of 4)	intron (NM_212473, intron 1 of 4)	8150.0	NM_212473	77938.0	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-121369044-4	chr10	121368927	121369127	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029364, intron 1 of 13)	intron (NM_029364, intron 1 of 13)	3937.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81393172-4	chr15	81393076	81393276	+	892.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133726, intron 1 of 11)	intron (NM_133726, intron 1 of 11)	6518.0	NM_133726	70356.0	Mm.180337	NM_133726	ENSMUSG00000022403	St13	1110007I03Rik|3110002K08Rik|AW555194|HIP|HOP|HSPABP|HSPABP1|PRO0786|SNC6|p48	suppression of tumorigenicity 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117280346-2	chr10	117280246	117280446	+	940.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_017372, intron 2 of 3)	intron (NM_017372, intron 2 of 3)	1926.0	NM_017372	17105.0	Mm.45436	NM_017372	ENSMUSG00000069516	Lyz2	AI326280|Lys|Lysm|Lyzf2|Lyzs|Lzm|Lzm-s1|Lzp	lysozyme 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-55953911-2	chr4	55953811	55954011	+	572.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-421436.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-122724854-4	chr6	122724764	122724964	+	932.6083369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16_Mm|LTR|ERVK	17299.0	NM_001289828	71950.0	Mm.6047	NM_028016	ENSMUSG00000012396	Nanog	2410002E02Rik|ENK|ecat4	Nanog homeobox	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-69750059-4	chr8	69749939	69750139	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001200023)	promoter-TSS (NM_001200023)	-77.0	NM_001200023	620419.0	Mm.460423	NM_001200023	ENSMUSG00000092260	Zfp963	-	zinc finger protein 963	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-46445137-2	chr4	46445037	46445237	+	569.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5789.0	NM_130889	67628.0	Mm.263913	NM_130889	ENSMUSG00000028333	Anp32b	2410015B15Rik|PAL31|PHAPI2a|Ssp29	acidic (leucine-rich) nuclear phosphoprotein 32 family, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-73254788-1	chr5	73254688	73254888	+	709.0	f1_balb.idr	intron (NM_028194, intron 1 of 62)	intron (NM_028194, intron 1 of 62)	1830.0	NM_028194	72313.0	Mm.260594	NM_028194	ENSMUSG00000070733	Fryl	2010313D22Rik|2310004H21Rik|2510002A14Rik|9030227G01Rik|mKIAA0826	FRY like transcription coactivator	protein-coding	-1.50544769289475	-1.31986892053265	-1.4829655254078	-1.49097125517992	-1.50318532870116	-1.47110741517505	-1.48075922391153	-1.1828372067068	0.779740177943635	0.822736701503013	1
Merged-chr16-4888861-1	chr16	4888761	4888961	+	544.0	f1_balb.idr	intron (NM_001357062, intron 1 of 17)	B1_Mur2|SINE|Alu	2761.0	NM_001357061	17237.0	Mm.291326	NM_029657	ENSMUSG00000022517	Mgrn1	2610042J20Rik|mKIAA0544|md|nc	mahogunin, ring finger 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-75313905-2	chr10	75313805	75314005	+	953.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2972.0	NM_009630	11540.0	Mm.333734	NM_009630	ENSMUSG00000020178	Adora2a	A2AAR|A2aR|AA2AR	adenosine A2a receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-34439405-12	chr1	34439287	34439487	+	999.944458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178601)	promoter-TSS (NM_178601)	285.0	NM_027159	69668.0	Mm.379170	NM_027159	ENSMUSG00000042111	Ccdc115	2310061I09Rik|Ccp1	coiled-coil domain containing 115	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-56430692-2	chr18	56430592	56430792	+	685.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360917, intron 1 of 13)	intron (NM_001360917, intron 1 of 13)	-1440.0	NM_026240	107022.0	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|Gramd2b|NS3TP2	GRAM domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-26455611-2	chr12	26455511	26455711	+	780.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021384, intron 1 of 5)	(CA)n|Simple_repeat|Simple_repeat	841.0	NM_021384	58185.0	Mm.24045	NM_021384	ENSMUSG00000020641	Rsad2	2510004L01Rik|Vig1|cig5	radical S-adenosyl methionine domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81185822-2	chr10	81185722	81185922	+	842.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001190473, intron 2 of 8)	B1_Mus1|SINE|Alu	1904.0	NM_007828	13144.0	Mm.10294	NM_007828	ENSMUSG00000034974	Dapk3	ZIPK|dlk	death-associated protein kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56277595-3	chr17	56277532	56277732	+	878.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_174989)	promoter-TSS (NM_174989)	-865.0	NM_174989	106759.0	Mm.203952	NM_174989	ENSMUSG00000047123	Ticam1	AW046014|AW547018|TICAM-1|TRIF	toll-like receptor adaptor molecule 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-14348447-2	chr9	14348347	14348547	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32795.0	NM_028013	71946.0	Mm.41423	NM_028013	ENSMUSG00000037419	Endod1	2210414F18Rik|2310067E08Rik|C85344	endonuclease domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117054913-2	chr8	117054813	117055013	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_029686, exon 14 of 43)	exon (NM_029686, exon 14 of 43)	27536.0	NM_029686	76645.0	Mm.159753	NM_029686	ENSMUSG00000034416	Pkd1l2	1700126L06Rik	polycystic kidney disease 1 like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-5824868-4	chr2	5824763	5824963	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356504, intron 3 of 6)	intron (NM_001356504, intron 3 of 6)	-20171.0	NM_016918	53893.0	Mm.251904	NM_016918	ENSMUSG00000025817	Nudt5	-	nudix (nucleoside diphosphate linked moiety X)-type motif 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24898012-2	chr17	24897958	24898158	+	586.75	f1_balb.idr|f1_c57bl6.idr	TTS (NM_019730)	TTS (NM_019730)	1558.0	NM_019730	79059.0	Mm.430765	NM_019730	ENSMUSG00000073435	Nme3	1810009F08Rik|AI413736|DR-nm23|Ndk3|Nm23-DR|Nm23-M3	NME/NM23 nucleoside diphosphate kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-119371511-4	chr12	119371419	119371619	+	978.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-71891.0	NM_001163136	238455.0	Mm.31376	NM_001163136	ENSMUSG00000041886	Macc1	4732474O15Rik|Gm267	metastasis associated in colon cancer 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-12279509-4	chr12	12279387	12279587	+	883.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029758, intron 2 of 12)	intron (NM_029758, intron 2 of 12)	17348.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	0.0432045230696308	-0.0870278231092165	0.371051030735411	-0.0964839459808989	0.047462427527577	-0.0858263329679025	0.695674475776694	-0.095763593459041	0.886109916068564	0.681652715057812	1
Merged-chr7-45867186-1	chr7	45867086	45867286	+	541.0	f1_balb.idr	promoter-TSS (NM_008172)	promoter-TSS (NM_008172)	-505.0	NM_008172	14814.0	Mm.322594	NM_008172	ENSMUSG00000002771	Grin2d	GluN2D|NMDAR2D|NR2D	glutamate receptor, ionotropic, NMDA2D (epsilon 4)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-106343063-3	chr8	106342954	106343154	+	886.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5066.0	NM_021491	58994.0	Mm.23298	NM_021491	ENSMUSG00000031906	Smpd3	4631433G07Rik|AI427456|AW537966|fro|nSMase2	sphingomyelin phosphodiesterase 3, neutral	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-79401101-2	chr15	79401001	79401201	+	601.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172608, intron 1 of 8)	intron (NM_172608, intron 1 of 8)	1818.0	NM_001253817	223693.0	Mm.323358	NM_172608	ENSMUSG00000009035	Tmem184b	2610507A11|4732495E13Rik	transmembrane protein 184b	protein-coding	-1.3681463318974	-1.33624156493372	-1.34650167276047	-0.80669348975676	-1.36769697821496	-1.33401815676661	-1.34417900924365	-1.3534210303531	-2.3580830592467	0.49586638340111	1
Merged-chr17-56170532-1	chr17	56170432	56170632	+	553.0	f1_balb.idr	intron (NM_025566, intron 1 of 1)	ID_B1|SINE|B4	8041.0	NM_025566	66443.0	Mm.2312	NM_025566	ENSMUSG00000044469	Tnfaip8l1	2600017J23Rik|TIPE1	tumor necrosis factor, alpha-induced protein 8-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-146752069-1	chr6	146751969	146752169	+	574.0	f1_c57bl6.idr	intron (NM_001346666, intron 1 of 11)	intron (NM_001346666, intron 1 of 11)	27139.0	NM_172734	232533.0	Mm.322121	NM_172734	ENSMUSG00000001630	Stk38l	4930473A22Rik|Ndr2|Ndr54	serine/threonine kinase 38 like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-143067895-2	chr7	143067795	143067995	+	547.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_133655)	TTS (NM_133655)	-1473.0	NM_020285	56844.0	Mm.139675	NM_020285	ENSMUSG00000045752	Tssc4	AA241958|ESTM671070	tumor-suppressing subchromosomal transferable fragment 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-71322556-2	chr2	71322456	71322656	+	598.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172436, intron 5 of 17)	L1MB5|LINE|L1	44998.0	NM_172436	78830.0	Mm.30928	NM_172436	ENSMUSG00000027010	Slc25a12	2610002D09Rik|AI839531|B230107K20Rik|BB129864	solute carrier family 25 (mitochondrial carrier, Aralar), member 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-72403631-2	chr1	72403531	72403731	+	698.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	96210.0	NM_001357519	22596.0	Mm.246952	NM_009533	ENSMUSG00000026187	Xrcc5	AI314015|CTC85|CTCBF|Ku80|Ku86	X-ray repair complementing defective repair in Chinese hamster cells 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-112612850-2	chr12	112612750	112612950	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198411, intron 22 of 22)	intron (NM_198411, intron 22 of 22)	-7197.0	NM_007421	11565.0	Mm.3440	NM_007421	ENSMUSG00000011148	Adssl1	AI528595|Adss|Adss1	adenylosuccinate synthetase like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99471427-1	chr7	99471327	99471527	+	1000.0	f1_c57bl6.idr	intron (NM_028145, intron 4 of 6)	intron (NM_028145, intron 4 of 6)	5423.0	NM_028145	72184.0	Mm.153585	NM_028145	ENSMUSG00000035298	Klhl35	2810406K13Rik	kelch-like 35	protein-coding	0.701533604837742	1.29149222333178	0.727398166364226	1.32183221155516	1.44525054968158	1.55571865160491	0.730128750524297	1.20912056658724	0.938437824819506	0.527400972775062	0.948839578239191
Merged-chr6-137557009-2	chr6	137556909	137557109	+	689.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271588, intron 1 of 20)	MTEb|LTR|ERVL-MaLR	14000.0	NM_001271595	13860.0	Mm.235346	NM_007945	ENSMUSG00000015766	Eps8	AW261790	epidermal growth factor receptor pathway substrate 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59612011-4	chr15	59611937	59612137	+	975.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36617.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	3.11925234113464	3.73769802457818	2.98193054712516	3.14465251506537	2.20398664805961	2.64046375491866	2.03722945251819	1.97138710440753	-2.00454277818794	0.00527423440122798	0.0695526948311345
Merged-chr6-122609583-2	chr6	122609483	122609683	+	918.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008108, intron 1 of 1)	intron (NM_008108, intron 1 of 1)	504.0	NM_008108	14562.0	Mm.299742	NM_008108	ENSMUSG00000030117	Gdf3	C78318|Gdf-3|Vgr-2|Vgr2|ecat9	growth differentiation factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55866050-4	chr19	55865933	55866133	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_138565, intron 4 of 15)	intron (NR_138565, intron 4 of 15)	-29288.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-60509060-2	chr11	60508960	60509160	+	634.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_182698, intron 46 of 62)	intron (NM_182698, intron 46 of 62)	-28623.0	NM_172943	268420.0	Mm.262056	NM_172943	ENSMUSG00000042650	Alkbh5	AW050020|AW215868|Abh5|E130207K11|Ofoxd	alkB homolog 5, RNA demethylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64346635-2	chr5	64346535	64346735	+	714.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 18 of 18)	intron (NM_001289514, intron 18 of 18)	116278.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-137031176-2	chr5	137031076	137031276	+	647.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001039385, exon 2 of 2)	exon (NM_001039385, exon 2 of 2)	881.0	NM_001039385	381677.0	Mm.389697	NM_001039385	ENSMUSG00000037428	Vgf	Gm1052	VGF nerve growth factor inducible	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-182121755-2	chr1	182121655	182121855	+	590.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-2982.0	NM_012058	27058.0	Mm.273196	NM_012058	ENSMUSG00000026511	Srp9	9kDa	signal recognition particle 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-122633496-4	chr6	122633375	122633575	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	7051.0	NM_139218	73708.0	Mm.27982	NM_139218	ENSMUSG00000046323	Dppa3	2410075G02Rik|PCG7|PGC7|Stella	developmental pluripotency-associated 3	protein-coding	3.2257318494534	3.2903232568344	2.77678443006928	3.00839591506879	2.68942793954052	3.4782573687752	2.36187923005212	3.02361776856742	-0.244567728755779	0.709042045376993	0.998431161219273
Merged-chr18-9731168-3	chr18	9731070	9731270	+	856.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130449, intron 2 of 9)	intron (NM_130449, intron 2 of 9)	23522.0	NM_130449	140792.0	Mm.218571	NM_130449	ENSMUSG00000036103	Colec12	CL-P1|SRCL|Scara4	collectin sub-family member 12	protein-coding	0.375015389872395	0.247198616172818	0.240235361206909	0.234844461616822	0.900385832855827	0.763822509253044	0.241773433232029	0.891614037463455	3.49197350356977	0.0725825694582091	1
Merged-chr16-52068413-2	chr16	52068313	52068513	+	599.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033238, intron 3 of 17)	intron (NM_001033238, intron 3 of 17)	36864.0	NM_001033238	208650.0	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124707719-2	chr6	124707619	124707819	+	714.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013536, intron 1 of 5)	B3A|SINE|B2	4459.0	NM_013536	14791.0	Mm.6390	NM_013536	ENSMUSG00000004268	Emg1	C2f|Grcc2f	EMG1 N1-specific pseudouridine methyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-162622113-3	chr1	162622004	162622204	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17046.0	NM_010865	17926.0	Mm.10694	NM_010865	ENSMUSG00000026697	Myoc	AI957332|GLC1A|TIGR	myocilin	protein-coding	4.00558985297922	4.91677215192322	4.42928692639896	4.47259547729882	6.05982215932086	6.57913148820344	6.80474646927674	6.37897663868577	2.26216778702348	1.06857585519945e-14	5.4946170474356e-12
Merged-chr18-21640174-3	chr18	21640196	21640396	+	789.361084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081403, intron 1 of 7)	L1MB8|LINE|L1	-11269.0	NM_001271580	74644.0	Mm.329311	NM_001271580		4930426D05Rik	-	RIKEN cDNA 4930426D05 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-47067529-2	chr7	47067429	47067629	+	760.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	15695.0	NR_106023	102465639.0		NR_106023	ENSMUSG00000098960	Mir7056	Gm27696|mmu-mir-7056	microRNA 7056	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-44163319-4	chr4	44163209	44163409	+	813.229187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038993, intron 1 of 11)	MTD|LTR|ERVL-MaLR	4229.0	NM_175201	73469.0	Mm.262859	NM_175201	ENSMUSG00000035696	Rnf38	1700065B19Rik|2610202O07Rik|AA673263|Oip1	ring finger protein 38	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-83655410-4	chr7	83655273	83655473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001360087, exon 13 of 19)	exon (NM_001360087, exon 13 of 19)	122.0	NM_001360089	16170.0	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-59520116-2	chr11	59520016	59520216	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER5|LTR|ERV1	-13476.0	NM_172941	268417.0	Mm.239793	NM_172941	ENSMUSG00000020472	Zkscan17	Nizp1|Zfp496|Znf496	zinc finger with KRAB and SCAN domains 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131283177-1	chr1	131283077	131283277	+	581.0	f0_balb.idr	Intergenic	Intergenic	-3614.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-99202543-3	chr11	99202425	99202625	+	657.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28492.0	NM_020618	57376.0	Mm.379086	NM_020618	ENSMUSG00000037935	Smarce1	2810417B20Rik|5830412H02Rik|9030408N19Rik|Baf27	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-149342914-1	chr6	149342814	149343014	+	566.0	f0_c57.idr	Intergenic	RLTR45|LTR|ERVK	33500.0	NM_001289662	67246.0	Mm.333515	NM_026054	ENSMUSG00000032712	2810474O19Rik	6720435I21Rik|AA536804|AU020969|GET|Kiaa1551	RIKEN cDNA 2810474O19 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-19750638-3	chr14	19750535	19750735	+	968.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008695)	promoter-TSS (NM_008695)	-622.0	NM_008695	18074.0	Mm.20348	NM_008695	ENSMUSG00000021806	Nid2	AW547149|Ly111|NID-2|entactin-2|nidogen-2	nidogen 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-66845682-4	chr14	66845577	66845777	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009955, intron 3 of 13)	intron (NM_009955, intron 3 of 13)	22923.0	NM_009955	12934.0	Mm.352648	NM_009955	ENSMUSG00000022048	Dpysl2	AI851130|Crmp2|DRP2|Musunc33|TOAD-64|Ulip2	dihydropyrimidinase-like 2	protein-coding	5.05452872127754	4.65457272119001	4.19042536912693	4.72425834515335	4.06912595742887	4.23079887285725	3.28532634958876	3.58666508129065	-1.11529016085874	0.00994093821715204	0.108560112314372
Merged-chr10-111365256-4	chr10	111365144	111365344	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	66565.0	NM_027914	71769.0	Mm.45256	NM_027914	ENSMUSG00000035759	Bbs10	1300007O09Rik|AI452285	Bardet-Biedl syndrome 10 (human)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-43828594-1	chr10	43828494	43828694	+	639.0	f0_balb.idr	intron (NR_131055, intron 1 of 2)	RMER20C_Mm|LTR|ERVK	2687.0	NR_131055	71018.0	Mm.410796	NR_131055	ENSMUSG00000111342	4933404K13Rik	-	RIKEN cDNA 4933404K13 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-140682764-3	chr6	140682738	140682938	+	814.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55953.0	NM_001309436	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-56222225-4	chr4	56222092	56222292	+	981.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	519233.0	NM_025271	11471.0	Mm.251434	NM_025271	ENSMUSG00000070980	Actl7b	Gm26657|Tact1	actin-like 7b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-88753850-1	chr18	88753750	88753950	+	800.0	f1_c57bl6.idr	Intergenic	RLTR40|LTR|ERVK	140357.0	NM_018821	54607.0	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-29802642-4	chr2	29802553	29802753	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011989)	promoter-TSS (NM_011989)	-27.0	NM_011989	26569.0	Mm.330113	NM_011989	ENSMUSG00000059316	Slc27a4	BB144259|FATP4	solute carrier family 27 (fatty acid transporter), member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-77850798-3	chr14	77850692	77850892	+	929.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025384, intron 3 of 5)	intron (NM_025384, intron 3 of 5)	24125.0	NM_025384	66148.0	Mm.248046	NM_025384	ENSMUSG00000022013	Dnajc15	1110003P16Rik|Dnajd1	DnaJ heat shock protein family (Hsp40) member C15	protein-coding	3.1688446910778	3.10258742770379	1.83261887466804	2.79085025884228	3.33237083462838	3.79831413690613	1.55321282105816	4.1486828144059	1.09303803618661	0.162405852237478	0.624046739382046
Merged-chr4-53030695-2	chr4	53030595	53030795	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_013454)	TTS (NM_013454)	18815.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-39068865-4	chr6	39068802	39069002	+	696.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 9 of 12)	intron (NM_011539, intron 9 of 12)	-1316.0	NR_040523	69986.0	Mm.490941	NR_040523	ENSMUSG00000100121	1700025N23Rik	-	RIKEN cDNA 1700025N23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-105306185-3	chr4	105306084	105306284	+	815.361084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	148837.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-57468781-3	chr8	57468665	57468865	+	801.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009136, intron 1 of 2)	B4A|SINE|B4	12842.0	NM_009136	20284.0	Mm.12886	NM_009136	ENSMUSG00000031610	Scrg1	AW124307	scrapie responsive gene 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-135261304-4	chr6	135261198	135261398	+	965.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6962.0	NM_001080553	14840.0	Mm.272306	NM_010352	ENSMUSG00000030206	Gsg1	-	germ cell associated 1	protein-coding	2.76092408249722	2.68743670354518	2.81033702332632	2.90718836034982	2.30053793564098	1.57166197481775	2.61759932314563	3.14294041159963	-0.494487961922131	0.530983503372464	0.950654387632934
Merged-chr16-21794347-4	chr16	21794225	21794425	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_037957)	promoter-TSS (NR_037957)	-22.0	NR_037958	100043489.0	Mm.326535	NR_037957	ENSMUSG00000097290	1300002E11Rik	1500026P21Rik	RIKEN cDNA 1300002E11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-135667487-3	chr7	135667378	135667578	+	987.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316681, intron 7 of 17)	intron (NM_001316681, intron 7 of 17)	-15164.0	NR_015548	67765.0	Mm.445272	NR_015548	ENSMUSG00000097471	5830432E09Rik	-	RIKEN cDNA 5830432E09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-34060887-1	chr15	34060787	34060987	+	742.0	f0_balb.idr	Intergenic	Intergenic	-21832.0	NM_001357926	67154.0	Mm.130883	NM_026002	ENSMUSG00000022255	Mtdh	2610103J23Rik|3D3|3D3/Lyric|AEG-1|AV353288|D8Bwg1112e|Lyric	metadherin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45924702-2	chr7	45924602	45924802	+	769.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3276.0	NM_010129	13732.0	Mm.20829	NM_010129	ENSMUSG00000040212	Emp3	H-4|H4|HNMP-1|MI-35|Ymp	epithelial membrane protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-106527439-2	chr8	106527339	106527539	+	738.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_007665, intron 2 of 15)	intron (NM_007665, intron 2 of 15)	16587.0	NM_001037809	12560.0	Mm.4658	NM_007665	ENSMUSG00000061048	Cdh3	AI385538|Cadp|Cdhp|P-cadherin|Pcad	cadherin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-42300570-3	chr13	42300366	42300566	+	790.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1010.0	NM_010104	13614.0	Mm.14543	NM_010104	ENSMUSG00000021367	Edn1	ET-1|PPET1|preproET	endothelin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-11008081-7	chr8	11007964	11008164	+	985.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081212, exon 1 of 2)	exon (NM_001081212, exon 1 of 2)	214.0	NR_046017	619321.0	Mm.403007	NR_046017	ENSMUSG00000096938	9530052E02Rik	-	RIKEN cDNA 9530052E02 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-57885989-3	chr15	57885898	57886098	+	872.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024207, intron 1 of 7)	intron (NM_024207, intron 1 of 7)	6420.0	NM_024207	67819.0	Mm.289387	NM_024207	ENSMUSG00000022365	Derl1	1110021N07Rik|AI195141|AW551338|Derlin-1	Der1-like domain family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-55460733-4	chr11	55460633	55460833	+	938.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009720, intron 1 of 3)	intron (NM_009720, intron 1 of 3)	475.0	NM_009720	11927.0	Mm.217759	NM_009720	ENSMUSG00000018585	Atox1	AI256639|Atx1	antioxidant 1 copper chaperone	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-59610947-2	chr19	59610806	59611006	+	701.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	117770.0	NR_045308	72647.0	Mm.410849	NR_045308	ENSMUSG00000100119	2700089I24Rik	-	RIKEN cDNA 2700089I24 gene	ncRNA	-1.32440223303897	-1.29339468673833	-0.717877708899544	-1.31276353204239	-1.32392690786997	-1.29109028300231	-1.30162128075409	-1.31119997543009	-2.49510383040271	0.470258445164311	1
Merged-chr14-122635346-2	chr14	122635246	122635446	+	763.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153443, intron 7 of 24)	B2_Mm2|SINE|B2	101018.0	NM_144844	110821.0	Mm.23876	NM_144844	ENSMUSG00000041650	Pcca	C79630	propionyl-Coenzyme A carboxylase, alpha polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-138525523-2	chr3	138525423	138525623	+	600.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_035481)	promoter-TSS (NR_035481)	-668.0	NM_007917	13684.0	Mm.3941	NM_007917	ENSMUSG00000028156	Eif4e	EG668879|Eif4e-ps|If4e|eIF-4E	eukaryotic translation initiation factor 4E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191095761-4	chr1	191095651	191095851	+	985.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	-2663.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-106875800-1	chr4	106875700	106875900	+	548.0	f0_balb.idr	Intergenic	Intergenic	-35670.0	NM_198438	72475.0	Mm.195635	NM_023672	ENSMUSG00000061887	Ssbp3	2610021L12Rik|2610200M23Rik|5730488C10Rik|AI854733|AW551939|LAST|SSDP1	single-stranded DNA binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-34749910-4	chr2	34749822	34750022	+	877.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151469, intron 2 of 26)	intron (NR_151469, intron 2 of 26)	5310.0	NM_001356441	66691.0	Mm.156452	NM_025709	ENSMUSG00000026867	Gapvd1	2010005B09Rik|4432404J10Rik|AW108497|Gapex-5|RAP6|RME-6|mKIAA1521	GTPase activating protein and VPS9 domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-120916901-4	chr6	120916779	120916979	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007544)	promoter-TSS (NM_007544)	-55.0	NM_007544	12122.0	Mm.235081	NM_007544	ENSMUSG00000004446	Bid	2700049M22Rik|AI875481|AU022477	BH3 interacting domain death agonist	protein-coding	5.13624326848825	3.45816978030129	3.75056231161343	4.99716230254398	4.90041838528101	4.7366382050687	4.7333140651214	5.5061195671011	0.568508423027235	0.197503558364438	0.679718702856214
Merged-chr6-82768742-2	chr6	82768642	82768842	+	620.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013820, intron 1 of 17)	intron (NM_013820, intron 1 of 17)	5712.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-66241436-2	chr14	66241336	66241536	+	795.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	-27612.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-86890787-2	chr5	86890687	86890887	+	935.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_153598, exon 6 of 6)	3' UTR (NM_153598, exon 6 of 6)	16150.0	NM_153598	100727.0	Mm.281844	NM_153598	ENSMUSG00000029260	Ugt2b34	AI788959	UDP glucuronosyltransferase 2 family, polypeptide B34	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-53748208-4	chr11	53748107	53748307	+	851.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15447.0	NR_106131	102465772.0		NR_106131	ENSMUSG00000099153	Mir7671	Gm27802|mmu-mir-7671	microRNA 7671	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-65737306-4	chr17	65737205	65737405	+	992.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133685, intron 1 of 6)	intron (NM_133685, intron 1 of 6)	35447.0	NM_133685	106572.0	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-64725008-2	chr2	64724908	64725108	+	679.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	297758.0	NM_016719	50915.0	Mm.214554	NM_016719	ENSMUSG00000026888	Grb14	AI505286	growth factor receptor bound protein 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-81339336-2	chr7	81339236	81339436	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5898.0	NM_009092	20068.0	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-39602637-4	chr1	39602534	39602734	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25287.0	NM_001033135	67702.0	Mm.28614	NM_001033135	ENSMUSG00000048234	Rnf149	1600023E10Rik|AV037261|C76763|Gm15832|Greul4	ring finger protein 149	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-41712619-3	chr4	41712523	41712723	+	719.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027278, exon 2 of 2)	exon (NM_027278, exon 2 of 2)	894.0	NM_027278	69961.0	Mm.425182	NM_027278	ENSMUSG00000036114	Rpp25l	2810432D09Rik|AW987258|Rppl25	ribonuclease P/MRP 25 subunit-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-152104882-4	chr2	152104794	152104994	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029688)	promoter-TSS (NM_029688)	-630.0	NM_029688	76650.0	Mm.218639	NM_029688	ENSMUSG00000032802	Srxn1	1700127B04Rik|AI854065|AW488194|Npn3|Srx|Srx1|TX01	sulfiredoxin 1 homolog (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-159607769-3	chr2	159607668	159607868	+	711.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-339573.0	NR_040498	71081.0	Mm.383491	NR_040498	ENSMUSG00000085198	4933416E03Rik	-	RIKEN cDNA 4933416E03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-103337892-3	chr12	103337819	103338019	+	872.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023049, intron 3 of 9)	intron (NM_023049, intron 3 of 9)	18082.0	NM_023049	65256.0	Mm.27159	NM_023049	ENSMUSG00000021200	Asb2	1110008E15Rik	ankyrin repeat and SOCS box-containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-46643511-4	chr4	46643406	46643606	+	770.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198664, intron 2 of 12)	intron (NM_198664, intron 2 of 12)	6693.0	NM_198664	381605.0	Mm.331595	NM_198664	ENSMUSG00000039813	Tbc1d2	A630005A06Rik|BC022630|Gm1037|PARIS-1|PARIS1	TBC1 domain family, member 2	protein-coding	2.23827171111008	2.9394470371084	2.84273120469609	2.07768923186233	2.25644494391323	2.96060314187161	2.30568516622785	2.3681621522303	-0.153320299318963	0.845039000987716	0.998431161219273
Merged-chr12-112895166-4	chr12	112895068	112895268	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25373.0	NR_105906	102465567.0		NR_105906	ENSMUSG00000098338	Mir6941	Gm27923|mmu-mir-6941	microRNA 6941	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33166771-2	chr16	33166671	33166871	+	599.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-18300.0	NM_176840	106326.0	Mm.486405	NM_176840	ENSMUSG00000022807	Osbpl11	9430097N02Rik|AI132306|AU019795|ORP-11	oxysterol binding protein-like 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-47090328-3	chr19	47090233	47090433	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011053)	promoter-TSS (NM_011053)	292.0	NM_023211	66477.0	Mm.29722	NM_023211	ENSMUSG00000071528	Usmg5	2010301L15Rik	upregulated during skeletal muscle growth 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24461798-1	chr17	24461698	24461898	+	596.0	f1_balb.idr	Intergenic	B3|SINE|B2	-6406.0	NR_125990	13560.0	Mm.163132	NM_007893	ENSMUSG00000024137	E4f1	p120E4F|phi-AP3	E4F transcription factor 1	protein-coding	1.06238505808515	1.6437679748391	0.919412721282571	1.53609965482271	1.74806271231077	0.938462934001238	1.59717863251722	1.75581502751939	0.797974198150826	0.534487782628699	0.95286627222167
Merged-chr2-124043514-2	chr2	124043414	124043614	+	675.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4c|LINE|L1	-46455.0	NM_001290997	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-44786989-2	chr1	44786889	44787089	+	546.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028450, intron 9 of 10)	ORR1B1-int|LTR|ERVL-MaLR	-42040.0	NR_040602	75066.0	Mm.416932	NR_040602	ENSMUSG00000101701	4930521E06Rik	-	RIKEN cDNA 4930521E06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117337843-2	chr8	117337743	117337943	+	877.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	-11327.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-154570669-4	chr2	154570577	154570777	+	846.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007891)	promoter-TSS (NM_007891)	-785.0	NM_007891	13555.0	Mm.18036	NM_007891	ENSMUSG00000027490	E2f1	E2F-1|Tg(Wnt1-cre)2Sor|mKIAA4009	E2F transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-40635991-2	chr12	40635891	40636091	+	744.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 5 of 52)	intron (NM_172803, intron 5 of 52)	189938.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27933658-1	chr17	27933558	27933758	+	787.0	f1_c57bl6.idr	intron (NM_181413, intron 1 of 24)	B1_Mur4|SINE|Alu	24352.0	NM_181413	224650.0	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	0.814485823308117	0.205649846928428	0.201074672225337	0.197576915992977	0.697268806214389	0.653027546515754	0.202079728357486	0.198185942133638	0.447301644038888	0.834984673543389	1
Merged-chr5-120519801-2	chr5	120519701	120519901	+	814.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177595, intron 3 of 13)	intron (NM_001177595, intron 3 of 13)	8609.0	NM_001177594	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-125180163-4	chr5	125180040	125180240	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253904)	promoter-TSS (NM_001253904)	-926.0	NM_001253904	20602.0	Mm.278646	NM_011424	ENSMUSG00000029478	Ncor2	N-CoR|SMRT|SMRTe	nuclear receptor co-repressor 2	protein-coding	3.43731881638084	2.24930609695625	1.43784460939453	2.86988007941244	3.72739476589784	1.50259332767728	2.76915901789434	3.28472042147698	0.591429795904507	0.511850369670882	0.945184804326582
Merged-chr7-36697488-3	chr7	36697361	36697561	+	869.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172298)	promoter-TSS (NM_172298)	-657.0	NM_172298	243931.0	Mm.44141	NM_172298	ENSMUSG00000021217	Tshz3	A630038G13Rik|Tsh3|Zfp537|mKIAA1474|teashirt3	teashirt zinc finger family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-103096866-3	chr14	103096754	103096954	+	980.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360342, intron 1 of 4)	intron (NM_001360342, intron 1 of 4)	2150.0	NM_001360341	50789.0	Mm.214746	NM_015822	ENSMUSG00000022124	Fbxl3	AU041772|AW212966|FBK|Fbl3a|Fbxl3a|Ovtm|Play68	F-box and leucine-rich repeat protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83070568-2	chr6	83070468	83070668	+	609.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009392)	promoter-TSS (NM_009392)	-343.0	NM_009392	21909.0	Mm.37	NM_009392	ENSMUSG00000068327	Tlx2	Enx|Hox11L.1|Hox11l1|NCX|Ncx1|Tlx1l1|Tlx1l2	T cell leukemia, homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-111234637-4	chr8	111234523	111234723	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009149, intron 1 of 25)	intron (NM_009149, intron 1 of 25)	24579.0	NM_009149	20340.0	Mm.276271	NM_009149	ENSMUSG00000003316	Glg1	AI593353|AW537898|CFR|CFR-1|ESL-1|MG-160|MG160|Selel	golgi apparatus protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-41606281-2	chr15	41606181	41606381	+	651.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_152565, intron 2 of 17)	intron (NR_152565, intron 2 of 17)	157178.0	NM_001358977	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-10322083-2	chr17	10321983	10322183	+	804.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_037588)	TTS (NR_037588)	2164.0	NR_037588	100526796.0	Mm.384135	NR_037588		Cahm	B930003M22Rik	colon adenocarcinoma hypermethylated RNA	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-130762262-3	chr7	130762168	130762368	+	726.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021314, intron 17 of 17)	intron (NM_021314, intron 17 of 17)	-11801.0	NM_001081038	330660.0	Mm.271550	NM_001081038	ENSMUSG00000040298	Btbd16	E330040A16Rik	BTB (POZ) domain containing 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-57881929-2	chr18	57881829	57882029	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009194, intron 1 of 26)	intron (NM_009194, intron 1 of 26)	3251.0	NM_009194	20496.0	Mm.399997	NM_009194	ENSMUSG00000024597	Slc12a2	9330166H04Rik|Nkcc1|mBSC2|sy-ns	solute carrier family 12, member 2	protein-coding	0.879743821594519	2.03876443421498	2.4767616773951	1.99800860304684	0.884788078694707	1.63761356938719	0.937217147926864	1.52214294641193	-2.03990739452617	0.111078955944743	0.521274568484366
Merged-chr1-153551013-2	chr1	153550913	153551113	+	608.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1299.0	NM_028749	74091.0	Mm.24887	NM_028749	ENSMUSG00000042684	Npl	0610033B02Rik	N-acetylneuraminate pyruvate lyase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-117329223-2	chr2	117329123	117329323	+	681.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011246, intron 2 of 16)	intron (NM_011246, intron 2 of 16)	13654.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52194631-4	chr13	52194519	52194719	+	875.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	97878.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-104234495-4	chr9	104234454	104234654	+	961.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359740, intron 5 of 56)	intron (NM_001359740, intron 5 of 56)	28376.0	NM_001359740	235567.0	Mm.217256	NM_001163026	ENSMUSG00000032560	Dnajc13	D030002L11Rik|Gm1124|RME-8|Rme8|mKIAA0678	DnaJ heat shock protein family (Hsp40) member C13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-43518987-2	chr19	43518875	43519075	+	754.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010324, intron 1 of 8)	intron (NM_010324, intron 1 of 8)	5630.0	NM_010324	14718.0	Mm.19039	NM_010324	ENSMUSG00000025190	Got1	AI789014|Got-1|cAspAT|cCAT	glutamic-oxaloacetic transaminase 1, soluble	protein-coding	0.0324568992439809	-0.435674801690112	-0.439858079035934	0.285997606458788	-0.447650868544788	-0.434732045163488	-0.438935291375471	-0.44252258892764	-3.58225432659106	0.177031751052149	1
Merged-chr2-34751241-2	chr2	34751141	34751341	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_151469, intron 2 of 26)	B1F1|SINE|Alu	3991.0	NM_001356441	66691.0	Mm.156452	NM_025709	ENSMUSG00000026867	Gapvd1	2010005B09Rik|4432404J10Rik|AW108497|Gapex-5|RAP6|RME-6|mKIAA1521	GTPase activating protein and VPS9 domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-70307200-3	chr9	70307105	70307305	+	893.194458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181072, intron 4 of 27)	intron (NM_181072, intron 4 of 27)	98548.0	NR_049200	100885839.0		NR_049200	ENSMUSG00000093763	Mir5626	Gm25590|mir-5626|mmu-mir-5626	microRNA 5626	ncRNA	3.09589016764804	3.52634054826692	2.64543729295333	2.96462059269775	2.83643456978835	1.8744467941724	2.66654779183676	1.97578449054809	-1.29110559929116	0.0825555973059987	0.439702007906499
Merged-chr4-132962822-4	chr4	132962705	132962905	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11290.0	NM_010208	14191.0	Mm.271665	NM_010208	ENSMUSG00000028874	Fgr	-	FGR proto-oncogene, Src family tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-84079824-3	chr4	84079729	84079929	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34950.0	NR_130998	78238.0	Mm.243903	NR_130998	ENSMUSG00000085217	6030471H07Rik	-	RIKEN cDNA 6030471H07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-5745110-3	chr11	5745000	5745200	+	761.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361588, intron 1 of 6)	L1MB4|LINE|L1	-3924.0	NM_178623	72046.0	Mm.271657	NM_178623	ENSMUSG00000049680	Urgcp	2010005J08Rik|9130001I21Rik|AW060359|Urg4|mKIAA1507	upregulator of cell proliferation	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-127827475-3	chr1	127827393	127827593	+	747.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011737, intron 6 of 9)	intron (NM_011737, intron 6 of 9)	12797.0	NM_011737	22625.0	Mm.246566	NM_011737	ENSMUSG00000051590	Map3k19	Ysk4	mitogen-activated protein kinase kinase kinase 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-35460715-2	chr2	35460615	35460815	+	681.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010283, intron 1 of 8)	intron (NM_010283, intron 1 of 8)	734.0	NM_001308299	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120321972-4	chr8	120321877	120322077	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-93747.0	NR_110496	434353.0	Mm.411793	NR_110496	ENSMUSG00000097960	A330074K22Rik	-	RIKEN cDNA A330074K22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-32193805-2	chr14	32193705	32193905	+	741.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016897, intron 3 of 6)	B2_Mm2|SINE|B2	8086.0	NM_016897	53600.0	Mm.303703	NM_016897	ENSMUSG00000013701	Timm23	Tim23	translocase of inner mitochondrial membrane 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-70963057-1	chr2	70962957	70963157	+	600.0	f0_c57.idr	Intergenic	Intergenic	55317.0	NM_001110512	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-123506385-2	chr4	123506285	123506485	+	714.833374	f1_balb.idr|f1_c57bl6.idr	exon (NM_001199136, exon 17 of 98)	exon (NM_001199136, exon 17 of 98)	-94474.0	NM_001167918	442834.0	Mm.483803	NM_001167918		D830031N03Rik	Kiaa0754|mKIAA0754	RIKEN cDNA D830031N03 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-129779554-2	chr10	129779454	129779654	+	761.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2B2|LINE|L1	3683.0	NM_146324	258321.0	Mm.391461	NM_146324	ENSMUSG00000050251	Olfr809	MOR108-4	olfactory receptor 809	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-108971944-2	chr9	108971844	108972044	+	819.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_007738, exon 68 of 118)	exon (NM_007738, exon 68 of 118)	2022.0	NR_030492	751536.0		NR_030492	ENSMUSG00000076142	Mir711	Mirn711|mir-711|mmu-mir-711	microRNA 711	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-158175148-2	chr3	158175048	158175248	+	565.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001291452, exon 18 of 27)	exon (NM_001291452, exon 18 of 27)	138466.0	NM_001289524	67144.0	Mm.358704	NM_024194	ENSMUSG00000063052	Lrrc40	2610040E16Rik|AI837674	leucine rich repeat containing 40	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-22807656-3	chr11	22807534	22807734	+	890.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR23|LTR|ERV1	52101.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-126553266-4	chr4	126553160	126553360	+	908.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3720.0	NM_175554	269582.0	Mm.243962	NM_175554	ENSMUSG00000042489	Clspn	B130025E01|C85083|E130314M08Rik	claspin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-111597496-2	chr8	111597396	111597596	+	847.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001168623, intron 1 of 4)	intron (NM_001168623, intron 1 of 4)	32826.0	NM_027570	52815.0	Mm.27589	NM_027570	ENSMUSG00000031958	Ldhd	4733401P21Rik|D8Bwg1320e	lactate dehydrogenase D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-105597956-2	chr5	105597856	105598056	+	619.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133897, intron 3 of 3)	intron (NM_133897, intron 3 of 3)	78485.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27085842-2	chr17	27085742	27085942	+	707.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_080553, intron 4 of 57)	B3|SINE|B2	-5403.0	NR_106142	102465779.0		NR_106142	ENSMUSG00000098826	Mir7677	Gm27400|mmu-mir-7677	microRNA 7677	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-90885965-3	chr16	90885878	90886078	+	796.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027627, intron 4 of 6)	intron (NM_027627, intron 4 of 6)	48871.0	NM_026502	68001.0	Mm.45374	NM_026502	ENSMUSG00000022972	1110004E09Rik	-	RIKEN cDNA 1110004E09 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-107928070-3	chr13	107927989	107928189	+	826.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38025.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	2.15700156989758	2.52135069218116	1.59069111426482	2.0383350090781	2.07044058627918	2.43253867962543	2.45605840345828	1.90929849734361	0.285187007672252	0.748978406369747	0.998431161219273
Merged-chr14-47178019-4	chr14	47177909	47178109	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008102, intron 1 of 5)	intron (NM_008102, intron 1 of 5)	11404.0	NM_008102	14528.0	Mm.10651	NM_008102	ENSMUSG00000037580	Gch1	GTP-CH|GTP-CH-I|GTPCH|Gch	GTP cyclohydrolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-108914212-3	chr12	108914139	108914339	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177602, intron 2 of 6)	intron (NM_177602, intron 2 of 6)	19967.0	NM_177602	212198.0	Mm.342082	NM_177602	ENSMUSG00000040877	Wdr25	B930090D16Rik	WD repeat domain 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-81107050-4	chr3	81106928	81107128	+	974.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019971, intron 1 of 5)	intron (NM_019971, intron 1 of 5)	70612.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	3.03810366889404	3.49849028884114	1.88169704129304	3.28622023383369	3.85749206171201	3.87238816590001	2.33935438406539	2.42965221530105	0.450541847425309	0.540706321883654	0.954866069207078
Merged-chr8-95703668-2	chr8	95703568	95703768	+	595.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_145602, intron 1 of 13)	intron (NM_145602, intron 1 of 13)	631.0	NM_145602	234593.0	Mm.29846	NM_145602	ENSMUSG00000036564	Ndrg4	D8Bwg1337e|Ndr1-rs|Ndr4|R74996|SMAP-8	N-myc downstream regulated gene 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30444312-2	chr7	30444212	30444412	+	786.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007467, intron 2 of 16)	intron (NM_007467, intron 2 of 16)	1270.0	NM_007467	11803.0	Mm.2381	NM_007467	ENSMUSG00000006651	Aplp1	-	amyloid beta (A4) precursor-like protein 1	protein-coding	-1.52696403314699	-1.49523967873556	-1.5048333853602	-1.51271394162622	-1.52473704212565	-1.49316068248889	-1.50266158046844	-1.06847079017215	2.01069003169785	0.564432837776867	1
Merged-chr9-106270067-4	chr9	106269975	106270175	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10986.0	NM_027354	70235.0	Mm.23054	NM_027354	ENSMUSG00000023345	Poc1a	2510040D07Rik|Wdr51a|cha	POC1 centriolar protein A	protein-coding	0.304296810111567	-0.0265124657296193	-0.036598704373135	-0.0445500821831233	0.312955011233628	1.46264893496821	-0.0343532597979024	-0.0431499472439608	3.02389995685845	0.145681497086676	1
Merged-chr11-103981003-2	chr11	103980903	103981103	+	581.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007477, intron 3 of 4)	intron (NM_007477, intron 3 of 4)	14132.0	NM_007477	11841.0	Mm.5061	NM_007477	ENSMUSG00000062421	Arf2	-	ADP-ribosylation factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-43580643-3	chr16	43580568	43580768	+	849.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181058, intron 5 of 6)	intron (NM_181058, intron 5 of 6)	-59987.0	NR_030576	100124467.0		NR_030576	ENSMUSG00000076372	Mir568	Mirn568|mmu-mir-568	microRNA 568	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-110692665-3	chr9	110692572	110692772	+	923.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028312, intron 2 of 6)	URR1B|DNA|hAT-Charlie	36169.0	NM_028312	72654.0	Mm.249115	NM_028312	ENSMUSG00000019659	Ccdc12	2700094L05Rik|C76605	coiled-coil domain containing 12	protein-coding	1.13096443385445	0.992943268511115	1.42520585653346	1.5483557646936	1.32087466454398	1.48947774940604	2.66279937931366	2.22393608555384	2.26337253300178	0.0490344347938695	0.322423355127976
Merged-chr18-82856608-4	chr18	82856517	82856717	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_125720, exon 2 of 3)	non-coding (NR_125720, exon 2 of 3)	720.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-49859679-4	chr16	49859590	49859790	+	873.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010581, intron 1 of 9)	intron (NM_010581, intron 1 of 9)	4036.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-41708531-3	chr4	41708434	41708634	+	812.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4983.0	NM_027278	69961.0	Mm.425182	NM_027278	ENSMUSG00000036114	Rpp25l	2810432D09Rik|AW987258|Rppl25	ribonuclease P/MRP 25 subunit-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-24554652-4	chr8	24554530	24554730	+	953.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145949, intron 2 of 9)	intron (NM_145949, intron 2 of 9)	21703.0	NM_145949	209176.0	Mm.219580	NM_145949	ENSMUSG00000031549	Ido2	AI265623|C230043N17Rik|Ido-2|Indol1	indoleamine 2,3-dioxygenase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-96034848-4	chr11	96034734	96034934	+	985.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033568)	promoter-TSS (NM_033568)	-51.0	NM_033568	27681.0	Mm.372235	NM_033568	ENSMUSG00000006058	Snf8	D11Moh34	SNF8, ESCRT-II complex subunit, homolog (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-78488338-2	chr11	78488238	78488438	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001168521, intron 2 of 8)	intron (NM_001168521, intron 2 of 8)	9416.0	NM_001168521	237868.0	Mm.210332	NM_172795	ENSMUSG00000050132	Sarm1	A830091I15Rik|C78606|MyD885|Sarm	sterile alpha and HEAT/Armadillo motif containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-108652527-1	chr3	108652427	108652627	+	562.0	f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-1386.0	NM_145543	229725.0	Mm.214545	NM_145543	ENSMUSG00000027884	Clcc1	Mclc	chloride channel CLIC-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117804845-6	chr10	117804724	117804924	+	804.347229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12119.0	NM_134010	103468.0	Mm.12568	NM_134010	ENSMUSG00000052798	Nup107	AW541137|C76801	nucleoporin 107	protein-coding	1.02635555452977	0.561040116533569	0.735829162820347	1.09781048321594	1.21279316437445	0.562993439914727	1.15124182048514	0.546799322910126	0.195834338411843	0.904449623090452	1
Merged-chr5-147540936-1	chr5	147540836	147541036	+	579.0	f1_balb.idr	intron (NM_028291, intron 16 of 18)	intron (NM_028291, intron 16 of 18)	110780.0	NM_028291	72587.0	Mm.320469	NM_028291	ENSMUSG00000029647	Pan3	2700050F09Rik|A430027N15Rik|AU014670	PAN3 poly(A) specific ribonuclease subunit	protein-coding	0.310482039737595	1.47472970547614	0.338104127261922	0.327902710865703	0.821943321452416	0.353893625986789	1.59108786393716	0.329700106182901	0.554749705622383	0.863383575040798	0.998431161219273
Merged-chr6-39527959-4	chr6	39527861	39528061	+	956.033325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172477, intron 1 of 18)	ORR1C2|LTR|ERVL-MaLR	29873.0	NM_172477	209773.0	Mm.440021	NM_172477	ENSMUSG00000038456	Dennd2a	B930096L08Rik|C130031G22|mKIAA1277	DENN/MADD domain containing 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-99183472-4	chr9	99183367	99183567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-43256.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70547218-1	chr8	70547118	70547318	+	545.0	f1_balb.idr	intron (NM_007924, intron 1 of 11)	intron (NM_007924, intron 1 of 11)	7543.0	NM_007924	13716.0	Mm.271973	NM_007924	ENSMUSG00000070002	Ell	Ell1|Men	elongation factor RNA polymerase II	protein-coding	0.447451631129863	0.108637589595323	0.534534920037138	0.0995445585051736	0.455698862797296	0.584978923934203	0.104629482205785	0.100234304887126	0.125708214702818	0.951271870151888	1
Merged-chr5-62739839-2	chr5	62739739	62739939	+	804.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178407, intron 2 of 32)	intron (NM_178407, intron 2 of 32)	26338.0	NM_178407	212285.0	Mm.244403	NM_178407	ENSMUSG00000037999	Arap2	Centd1|Gm148|mKIAA0580	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3234839-2	chr12	3234739	3234939	+	784.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015551)	promoter-TSS (NR_015551)	-952.0	NR_015551	74173.0	Mm.309774	NM_028796	ENSMUSG00000079179	Rab10os	1700012B15Rik|1810036A22Rik	RAB10, member RAS oncogene family, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-12640679-4	chr18	12640551	12640751	+	979.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2882.0	NM_028341	72747.0	Mm.52526	NM_028341	ENSMUSG00000024424	Ttc39c	1700008N02Rik|2810439F02Rik	tetratricopeptide repeat domain 39C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-23756985-4	chr13	23756917	23757117	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178193)	promoter-TSS (NM_178193)	80.0	NM_178193	326620.0	Mm.261642	NM_178193	ENSMUSG00000069266	Hist1h4b	-	histone cluster 1, H4b	protein-coding	4.54635545957582	3.78310901067445	3.81979174459326	4.61554303863247	4.67645590709809	3.50695083444316	3.49065625078057	4.43003669875292	-0.144632579012836	0.764765501775896	0.998431161219273
Merged-chr4-133839916-1	chr4	133839816	133840016	+	709.0	f1_balb.idr	Intergenic	B1_Mus2|SINE|Alu	34815.0	NM_001285506	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	-0.226257474402676	-0.212953216295797	-0.217322871399236	0.391916478074529	0.145820654608004	0.139045217551845	-0.216360035846899	-0.220099641502088	0.0341028986527073	0.98875788801114	1
Merged-chr12-100168151-2	chr12	100168051	100168251	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8498.0	NM_183155	217827.0	Mm.224076	NM_183155	ENSMUSG00000021179	Nrde2	6720454P05Rik	nrde-2 necessary for RNA interference, domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-44615962-1	chr15	44615862	44616062	+	555.0	f1_balb.idr	Intergenic	RMER10B|LTR|ERVL	-3265.0	NM_001357690	55960.0	Mm.287896	NM_019480	ENSMUSG00000022339	Ebag9	AI835379|Rcas1	estrogen receptor-binding fragment-associated gene 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65288386-2	chr9	65288286	65288486	+	960.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	-5874.0	NM_011802	270166.0	Mm.30088	NM_011802	ENSMUSG00000015357	Clpx	AU014732|E330029I21	caseinolytic mitochondrial matrix peptidase chaperone subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-129179966-2	chr6	129179854	129180054	+	620.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053109)	promoter-TSS (NM_053109)	-661.0	NM_053109	93694.0	Mm.197536	NM_053109	ENSMUSG00000030157	Clec2d	Clr-b|Clrb|Ocil	C-type lectin domain family 2, member d	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-93996226-1	chr13	93996126	93996326	+	557.0	f1_c57bl6.idr	Intergenic	Intergenic	-61570.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101138845-4	chr15	101138740	101138940	+	884.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001277255, intron 10 of 11)	intron (NM_001277255, intron 10 of 11)	10318.0	NM_001277257	11482.0	Mm.279542	NM_009612	ENSMUSG00000000530	Acvrl1	AI115505|AI427544|Acvrlk1|Alk1	activin A receptor, type II-like 1	protein-coding	5.13681288145537	4.47109768715278	5.79940980347112	5.46906261091685	4.52067290673855	4.1435022819278	4.95474285603122	5.00302727956136	-0.71759252405829	0.0529044125589929	0.336676348240522
Merged-chr14-19771440-4	chr14	19771364	19771564	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008695, intron 4 of 20)	intron (NM_008695, intron 4 of 20)	20207.0	NM_008695	18074.0	Mm.20348	NM_008695	ENSMUSG00000021806	Nid2	AW547149|Ly111|NID-2|entactin-2|nidogen-2	nidogen 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-59243629-5	chr2	59243563	59243763	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 2 of 20)	intron (NM_175464, intron 2 of 20)	82813.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-89311695-4	chr6	89311612	89311812	+	999.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11B|LTR|ERVK	-25987.0	NR_131021	75131.0	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	Gm44205	RIKEN cDNA 4930512J16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-82626804-2	chr10	82626704	82626904	+	678.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3034.0	NM_001358517	21665.0	Mm.284252	NM_011561	ENSMUSG00000034674	Tdg	E130317C12Rik|JZA-3|Jza1	thymine DNA glycosylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-101972583-2	chr10	101972483	101972683	+	698.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205098, intron 2 of 7)	Lx4A|LINE|L1	-186275.0	NM_001162368	67569.0	Mm.25252	NM_026243	ENSMUSG00000019888	Mgat4c	9130411I17Rik|GntIVh	MGAT4 family, member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-30185057-3	chr16	30184960	30185160	+	796.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	82472.0	NM_027904	71756.0	Mm.290614	NM_027904	ENSMUSG00000023176	Cpn2	1300018K11Rik	carboxypeptidase N, polypeptide 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-65943500-4	chr3	65943404	65943604	+	968.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14745.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	3.24228736799499	2.82238897153055	3.07940395189939	3.40929717972017	3.26819317268624	2.8432350157713	3.1031625891933	3.61957320352672	0.14333992884081	0.81078757805763	0.998431161219273
Merged-chr4-22815632-2	chr4	22815532	22815732	+	547.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	325084.0	NR_131335	105500046.0		NR_131335	ENSMUSG00000107859	Gm30731	Pnky|lnc-pou3f2	predicted gene, 30731	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-103241896-4	chr9	103241858	103242058	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11672.0	NM_133977	22041.0	Mm.37214	NM_133977	ENSMUSG00000032554	Trf	AI266983|Cd176|HP|Tf|Tfn|hpx	transferrin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-41519949-1	chr10	41519849	41520049	+	1000.0	f0_balb.idr	intron (NM_016898, intron 1 of 5)	CpG	449.0	NM_016898	53599.0	Mm.269815	NM_016898	ENSMUSG00000019818	Cd164	A115|A24|AA589639|AW540279|MGC-24|MSSP	CD164 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81348028-2	chr10	81347928	81348128	+	598.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_010440, exon 5 of 9)	exon (NM_010440, exon 5 of 9)	2398.0	NM_001163165	15353.0	Mm.38474	NM_010440	ENSMUSG00000020232	Hmg20b	AW610687|BRAF35|Hmgx2|Hmgxb2|Smarce1r	high mobility group 20B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-32586756-2	chr4	32586656	32586856	+	604.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001109661)	TTS (NM_001109661)	-15094.0	NR_026843	414068.0	Mm.389550	NR_026843	ENSMUSG00000086150	Bach2os	-	BTB and CNC homology 2, opposite strand	ncRNA	1.65942829363031	0.608535004861938	1.50690352012834	0.584431638863031	0.912795802374351	1.48141874750649	0.598044174613297	0.586298874484022	-0.916386649092464	0.574627533542665	0.965058951210092
Merged-chr4-45882541-2	chr4	45882441	45882641	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001305421, intron 16 of 18)	intron (NM_001305421, intron 16 of 18)	-7762.0	NM_198660	381522.0	Mm.54220	NM_198660	ENSMUSG00000035539	Ccdc180	E230008N13Rik|Gm1025	coiled-coil domain containing 180	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-102218987-4	chr11	102218882	102219082	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001284248, intron 4 of 28)	intron (NM_001284248, intron 4 of 28)	11168.0	NR_106179	102465892.0		NR_106179	ENSMUSG00000098863	Mir8101	Gm27705|mmu-mir-8101	microRNA 8101	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-117152378-2	chr4	117152278	117152478	+	764.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	2196.0	NR_028524	100217424.0		NR_028524	ENSMUSG00000065680	Snord38a	MBII-329	small nucleolar RNA, C/D box 38A	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-6055113-2	chr17	6055026	6055226	+	938.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360148, intron 10 of 15)	intron (NM_001360148, intron 10 of 15)	24613.0	NM_001111017	321007.0	Mm.5548	NM_177311	ENSMUSG00000015659	Serac1	4930511N22Rik|D17Ertd141e	serine active site containing 1	protein-coding	1.93055293710925	1.03017918902188	2.1219247620162	0.972244947274446	2.32059965060272	1.03717669361433	3.11996616048926	1.46316885285824	1.45580258788905	0.225033364617356	0.717001488400471
Merged-chr14-73435012-2	chr14	73434912	73435112	+	560.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49723.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-52513021-4	chr2	52512918	52513118	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037099, intron 2 of 13)	intron (NM_001037099, intron 2 of 13)	45593.0	NM_146123	12298.0	Mm.330223	NM_146123	ENSMUSG00000017412	Cacnb4	3110038O15Rik|Cchb4|lh	calcium channel, voltage-dependent, beta 4 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-16903549-2	chr6	16903449	16903649	+	766.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTRIS_Mm|LTR|ERV1	-5108.0	NM_031198	21426.0	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-122604503-4	chr6	122604429	122604629	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008108)	TTS (NM_008108)	-2085.0	NM_001134391	11810.0	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41272147-2	chr19	41272047	41272247	+	773.083374	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20C2_MM|LTR|ERVK	-8143.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-33955279-1	chr17	33955179	33955379	+	1000.0	f0_c57.idr	promoter-TSS (NM_001357330)	promoter-TSS (NM_001357330)	362.0	NM_011296	20084.0	Mm.298745	NM_011296	ENSMUSG00000008668	Rps18	H-2Ke3|H2-Ke3|Ke-3|ke3	ribosomal protein S18	protein-coding	3.27324149574617	2.58043064284612	2.331416105476	3.43976940617607	2.67717058295133	3.10833951305272	3.19303682180717	3.01014288273801	0.0110246898990727	0.986883775253709	0.998431161219273
Merged-chr7-88128665-4	chr7	88128563	88128763	+	990.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001143834, intron 10 of 10)	intron (NM_001143834, intron 10 of 10)	-149422.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-55348178-2	chr8	55348078	55348278	+	983.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	393450.0	NM_001253756	234267.0	Mm.241700	NM_153581	ENSMUSG00000031517	Gpm6a	Gpm6|M6A	glycoprotein m6a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191111369-4	chr1	191111271	191111471	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12957.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	4.61970500699839	5.45667780398144	5.04370411449194	4.17792270224512	4.41078722978311	5.65653163545759	4.66217744889951	4.19945026047823	-0.0609769592185161	0.885523092349398	0.998431161219273
Merged-chr18-63692439-4	chr18	63692349	63692549	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016792)	promoter-TSS (NM_016792)	-90.0	NM_016792	53382.0	Mm.19169	NM_016792	ENSMUSG00000024583	Txnl1	32kDa|TRP32|Txnl	thioredoxin-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-155276863-4	chr2	155276774	155276974	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_046364, intron 1 of 2)	CpG	510.0	NR_046364	66734.0	Mm.196239	NM_025735	ENSMUSG00000027602	Map1lc3a	1010001H21Rik|4922501H04Rik|LC3|LC3a	microtubule-associated protein 1 light chain 3 alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-9059566-4	chr5	9059486	9059686	+	995.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41151.0	NM_001081029	652925.0	Mm.439954	NM_001081029	ENSMUSG00000079659	Tmem243	4930420K17Rik|E030031F02Rik	transmembrane protein 243, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80642082-4	chr7	80641980	80642180	+	818.974976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040343, exon 5 of 5)	non-coding (NR_040343, exon 5 of 5)	6063.0	NR_040343	100504375.0	Mm.322881	NR_040343	ENSMUSG00000084821	Gm15880	-	predicted gene 15880	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-57644598-4	chr9	57644529	57644729	+	957.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304761, intron 2 of 14)	intron (NM_001304761, intron 2 of 14)	1024.0	NM_007783	12988.0	Mm.21974	NM_007783	ENSMUSG00000032312	Csk	AW212630|p50CSK	c-src tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-14103600-2	chr9	14103500	14103700	+	638.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-172701.0	NM_030261	75747.0	Mm.325126	NM_030261	ENSMUSG00000032009	Sesn3	5630400E15Rik|BC003348|SEST3	sestrin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-88821867-4	chr13	88821810	88822010	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010103, exon 1 of 10)	5' UTR (NM_010103, exon 1 of 10)	438.0	NM_001037987	13612.0	Mm.125580	NM_010103	ENSMUSG00000034488	Edil3	Del-1|Del1|Sox2-cre|Sox2Cre|Tg(Sox2-cre)1Amc	EGF-like repeats and discoidin I-like domains 3	protein-coding	-0.698742151590732	-0.685544933892423	0.234861082756819	-0.693173093001843	-0.697910795002036	-0.684580389347422	-0.485908461853699	-0.692589699261486	-2.58169245575011	0.355252227622671	1
Merged-chr3-144688423-3	chr3	144688327	144688527	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_019464, exon 9 of 9)	3' UTR (NM_019464, exon 9 of 9)	31908.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-23664716-3	chr17	23664634	23664834	+	849.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153784, intron 2 of 9)	MIRb|SINE|MIR	4228.0	NM_153784	212733.0	Mm.59997	NM_153784	ENSMUSG00000043782	Bicdl2	BICDR-2|Ccdc64b	BICD family like cargo adaptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123136989-4	chr5	123136888	123137088	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4359.0	NM_175092	23912.0	Mm.253876	NM_175092	ENSMUSG00000029449	Rhof	AI845056|AV026554|Arhf|Ifld1|Rif	ras homolog family member F (in filopodia)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4046018-3	chr19	4045912	4046112	+	586.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3791.0	NM_181796	14869.0	Mm.441542	NM_181796	ENSMUSG00000038155	Gstp2	GSTpiA|Gst-3|Gst3	glutathione S-transferase, pi 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-42945368-4	chr9	42945316	42945516	+	928.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1045.0	NM_175481	110637.0	Mm.370291	NM_175481	ENSMUSG00000032017	Grik4	6330551K01Rik|GluK4|GluRgamma1|KA-1|KA1	glutamate receptor, ionotropic, kainate 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-81904361-4	chr7	81904277	81904477	+	944.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013886, intron 2 of 5)	MLT1J|LTR|ERVL-MaLR	30082.0	NM_013886	29877.0	Mm.392934	NM_013886	ENSMUSG00000025104	Hdgfl3	2700022B06Rik|HRP-3|Hdgfrp3	HDGF like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-151756711-2	chr1	151756611	151756811	+	617.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001311165, intron 1 of 20)	intron (NM_001311165, intron 1 of 20)	1337.0	NM_001311166	66967.0	Mm.337691	NM_001039644	ENSMUSG00000043019	Edem3	2310050N11Rik	ER degradation enhancer, mannosidase alpha-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-75097009-4	chr8	75096920	75097120	+	633.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010442, exon 3 of 5)	exon (NM_010442, exon 3 of 5)	3402.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-103503777-2	chr15	103503677	103503877	+	687.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008800, intron 2 of 15)	intron (NM_008800, intron 2 of 15)	743.0	NM_008800	18574.0	Mm.390792	NM_008800	ENSMUSG00000022489	Pde1b	Pde1b1	phosphodiesterase 1B, Ca2+-calmodulin dependent	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100725640-4	chr11	100725507	100725707	+	991.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305003, intron 1 of 5)	MIR3|SINE|MIR	11757.0	NM_029307	75482.0	Mm.46175	NM_029307	ENSMUSG00000017832	Hspb9	1700007H20Rik	heat shock protein, alpha-crystallin-related, B9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-119040015-4	chr10	119039888	119040088	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152787, intron 3 of 3)	intron (NR_152787, intron 3 of 3)	10511.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-25246060-3	chr5	25245947	25246147	+	589.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359890)	promoter-TSS (NM_001359890)	-326.0	NM_001359890	231050.0	Mm.246718	NM_144908	ENSMUSG00000038072	Galnt11	A430075I06Rik|AI648252|E430002F06Rik	polypeptide N-acetylgalactosaminyltransferase 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3584599-2	chr19	3584499	3584699	+	665.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_008513)	TTS (NM_008513)	-8850.0	NM_028999	52036.0	Mm.284686	NM_028999	ENSMUSG00000024908	Ppp6r3	4930528G08Rik|9130026N02Rik|D19Bwg1430e|D19Ertd703e|Pp6r3|Ppcs3|Pptcs3|Sapl|Saps3|mKIAA1558	protein phosphatase 6, regulatory subunit 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-29827244-4	chr2	29827145	29827345	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026615)	promoter-TSS (NM_026615)	-144.0	NM_026615	68205.0	Mm.20273	NM_026615	ENSMUSG00000069020	Urm1	2900073H19Rik	ubiquitin related modifier 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-143821767-2	chr7	143821667	143821867	+	939.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030221, intron 1 of 20)	URR1A|DNA|hAT-Charlie	1085.0	NM_001308095	78914.0	Mm.35104	NM_030221	ENSMUSG00000031090	Nadsyn1	9130012B15Rik	NAD synthetase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-108032001-4	chr5	108031894	108032094	+	783.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-33680.0	NM_001359088	17765.0	Mm.257149	NM_013827	ENSMUSG00000029267	Mtf2	9230112N11Rik|AA537621|C76717|M96|Pcl2	metal response element binding transcription factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-142010662-3	chr4	142010545	142010745	+	782.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177868, intron 1 of 31)	intron (NM_177868, intron 1 of 31)	1006.0	NM_177868	329977.0	Mm.252019	NM_028429	ENSMUSG00000051435	Fhad1	2900090M10Rik|B230311F11	forkhead-associated (FHA) phosphopeptide binding domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-121354429-4	chr11	121354297	121354497	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025793)	promoter-TSS (NM_025793)	50.0	NM_025793	66840.0	Mm.103986	NM_025793	ENSMUSG00000025173	Wdr45b	0610008N23Rik|AA408735|D16Bwg0193e|WIPI-3|Wdr45l	WD repeat domain 45B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-40154991-2	chr4	40154891	40155091	+	598.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007386, intron 1 of 20)	intron (NM_007386, intron 1 of 20)	11726.0	NM_007386	11428.0	Mm.331547	NM_007386	ENSMUSG00000028405	Aco1	Aco-1|Irebp|Irp1	aconitase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-69198077-8	chr12	69197977	69198177	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033222, exon 2 of 2)	non-coding (NR_033222, exon 2 of 2)	352.0	NM_027269	109065.0	Mm.107180	NM_027269	ENSMUSG00000020973	Dnaaf2	Ktu|TU54|kintoun|mknt	dynein, axonemal assembly factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-66476090-4	chr15	66475986	66476186	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019457, intron 3 of 11)	intron (NM_019457, intron 3 of 11)	24824.0	NM_019457	54562.0	Mm.244890	NM_019457	ENSMUSG00000022375	Lrrc6	LRTP	leucine rich repeat containing 6 (testis)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55591677-4	chr14	55591557	55591757	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011190)	promoter-TSS (NM_011190)	-85.0	NM_194346	268749.0	Mm.23748	NM_194346	ENSMUSG00000047098	Rnf31	AL033293|BC031509|Flj10111|HOIP|Paul|mFLJ00217	ring finger protein 31	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-44256735-3	chr17	44256637	44256837	+	628.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172621, intron 4 of 5)	intron (NM_172621, intron 4 of 5)	68165.0	NM_172621	224796.0	Mm.37666	NM_172621	ENSMUSG00000023959	Clic5	5730531E12Rik|B330005L24|Gm322|jbg|nmf318	chloride intracellular channel 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-55461314-4	chr11	55461202	55461402	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009720)	promoter-TSS (NM_009720)	-94.0	NM_009720	11927.0	Mm.217759	NM_009720	ENSMUSG00000018585	Atox1	AI256639|Atx1	antioxidant 1 copper chaperone	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-70637775-3	chr13	70637680	70637880	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144837)	promoter-TSS (NM_144837)	-146.0	NM_144837	218333.0	Mm.139738	NM_144837	ENSMUSG00000034525	Ice1	C77245|mKIAA0947	interactor of little elongation complex ELL subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-76417438-2	chr14	76417338	76417538	+	613.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001310646, exon 3 of 5)	exon (NM_001310646, exon 3 of 5)	1617.0	NM_207652	21807.0	Mm.153272	NM_009366	ENSMUSG00000022010	Tsc22d1	AA589566|AW105905|Egr5|TSC-22|Tgfb1i4|Tsc|Tsc22	TSC22 domain family, member 1	protein-coding	-1.18378942727406	-1.15669478905697	-0.457913181653105	-1.17806440097404	-1.18323730008524	-1.15415234459186	-1.16577117532349	-1.17633933179771	-2.81844548480871	0.412768592413622	1
Merged-chr17-35304774-2	chr17	35304674	35304874	+	853.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15773.0	NM_010390	15006.0	Mm.466882	NM_010390	ENSMUSG00000079507	H2-Q1	H-2Q1|Q1|Q1b|Q1d|Q1k|Qa-1|Qa1|Qed-1	histocompatibility 2, Q region locus 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94080725-2	chr10	94080625	94080825	+	624.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_053072, intron 3 of 20)	intron (NM_053072, intron 3 of 20)	44724.0	NM_053072	13998.0	Mm.269596	NM_053072	ENSMUSG00000020021	Fgd6	AA123052|Etohd4|ZFYVE24	FYVE, RhoGEF and PH domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78447866-3	chr15	78447763	78447963	+	917.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355601, intron 10 of 17)	intron (NM_001355601, intron 10 of 17)	19299.0	NR_110357	72844.0	Mm.390816	NM_001081367	ENSMUSG00000033287	Kctd17	2900008M13Rik|AA414907|AW742389|N28155	potassium channel tetramerisation domain containing 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80798541-4	chr10	80798396	80798596	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013651)	promoter-TSS (NM_013651)	130.0	NM_023900	78670.0	Mm.41479	NM_023900	ENSMUSG00000035278	Plekhj1	9530063M10Rik	pleckstrin homology domain containing, family J member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-35955998-3	chr13	35955899	35956099	+	929.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-11907.0	NM_029628	76487.0	Mm.44745	NM_029628	ENSMUSG00000050423	Ppp1r3g	1600032L17Rik	protein phosphatase 1, regulatory (inhibitor) subunit 3G	protein-coding	2.23651862057618	3.2137617400492	2.43026138525573	3.24905321178276	2.3892382256162	3.23695423523582	2.44965080673017	3.33231868547269	0.116362501802302	0.872448833039911	0.998431161219273
Merged-chr3-138889418-3	chr3	138889303	138889503	+	906.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_121195, intron 2 of 7)	intron (NR_121195, intron 2 of 7)	147195.0	NM_019571	56224.0	Mm.31927	NM_019571	ENSMUSG00000028152	Tspan5	2810455A09Rik|4930505M03Rik|NET-4|Tm4sf9	tetraspanin 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-113908852-4	chr5	113908761	113908961	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011779)	promoter-TSS (NM_011779)	-155.0	NM_011779	23790.0	Mm.260158	NM_011779	ENSMUSG00000004530	Coro1c	AL022675|AW455561|AW548837	coronin, actin binding protein 1C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-62075246-2	chr11	62075146	62075346	+	626.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310526, intron 3 of 7)	L2a|LINE|L2	-1778.0	NM_001029936	432572.0	Mm.438022	NM_001029936	ENSMUSG00000042331	Specc1	2810012G08Rik|B230396K10Rik|Cytsb	sperm antigen with calponin homology and coiled-coil domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-48790446-4	chr11	48790350	48790550	+	861.7374880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9910.0	NM_008143	14694.0	Mm.5305	NM_008143	ENSMUSG00000020372	Rack1	AL033335|GB-like|Gnb2-rs1|Gnb2l1|p205	receptor for activated C kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56808729-4	chr17	56808622	56808822	+	935.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009056, intron 1 of 16)	intron (NM_009056, intron 1 of 16)	22286.0	NM_009056	19725.0	Mm.102	NM_009056	ENSMUSG00000024206	Rfx2	5430432H19Rik	regulatory factor X, 2 (influences HLA class II expression)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-172351429-2	chr2	172351329	172351529	+	579.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025912, intron 1 of 2)	intron (NM_025912, intron 1 of 2)	5852.0	NM_025912	67017.0	Mm.30013	NM_025912	ENSMUSG00000027495	Fam210b	2010011I20Rik|AI430961|AV108736	family with sequence similarity 210, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-58108230-3	chr11	58108009	58108209	+	840.0476070000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356477, intron 1 of 6)	intron (NM_001356477, intron 1 of 6)	3880.0	NM_001356477	69125.0	Mm.28910	NM_026949	ENSMUSG00000020515	Cnot8	1500015I04Rik|1810022F04Rik|AA536816|AU015770|AU043059	CCR4-NOT transcription complex, subunit 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-10981140-2	chr16	10981040	10981240	+	994.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019980, intron 1 of 3)	intron (NM_019980, intron 1 of 3)	11981.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-33285613-4	chr4	33285523	33285723	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24688.0	NM_011884	24018.0	Mm.240024	NM_011884	ENSMUSG00000028274	Rngtt	AU020997|HCE|MCE1	RNA guanylyltransferase and 5'-phosphatase	protein-coding	3.08498663906369	3.17259131793021	2.55861695868949	3.24970090525665	2.36965399648074	3.63797579745769	3.52231687719531	3.55272189579675	0.519788388537248	0.412749531625833	0.894783826796838
Merged-chr11-61678898-2	chr11	61678798	61678998	+	577.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033227, intron 10 of 15)	intron (NM_001033227, intron 10 of 15)	-5512.0	NM_178618	69640.0	Mm.458559	NM_178618	ENSMUSG00000042377	Fam83g	2310040C09Rik|AI506990|wly	family with sequence similarity 83, member G	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-92278900-1	chr5	92278800	92279000	+	807.5	f1_c57bl6.idr	promoter-TSS (NM_001163687)	promoter-TSS (NM_001163687)	-719.0	NM_025972	67111.0	Mm.28890	NM_025972	ENSMUSG00000029413	Naaa	2210023K21Rik|3830414F09Rik|Asahl	N-acylethanolamine acid amidase	protein-coding	1.35652731315815	0.771858688473525	0.760148478497607	1.44138650917048	1.36943413144461	0.774479249815472	1.26994861656448	1.45007565443803	0.465433913457889	0.75092976559145	0.998431161219273
Merged-chr12-16908143-2	chr12	16908043	16908243	+	650.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009072, intron 1 of 32)	B2_Mm2|SINE|B2	13165.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-41263498-4	chr13	41263396	41263596	+	852.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001135577, intron 1 of 1)	intron (NM_001135577, intron 1 of 1)	13652.0	NM_001135577	108934.0	Mm.38578	NM_001135577	ENSMUSG00000091264	Smim13	2900036K02Rik	small integral membrane protein 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-39268830-4	chr6	39268710	39268910	+	988.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62037.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21685599-2	chr9	21685499	21685699	+	654.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357764, intron 29 of 34)	RSINE1|SINE|B4	-37977.0	NM_001252658	16835.0	Mm.3213	NM_010700	ENSMUSG00000032193	Ldlr	Hlb301	low density lipoprotein receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81546024-2	chr10	81545924	81546124	+	865.125	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010301)	promoter-TSS (NM_010301)	-978.0	NM_010301	14672.0	Mm.260925	NM_010301	ENSMUSG00000034781	Gna11	Dsk7|E430025L19	guanine nucleotide binding protein, alpha 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-46845122-4	chr7	46845037	46845237	+	683.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_102727)	promoter-TSS (NR_102727)	-667.0	NM_010699	16828.0	Mm.29324	NM_010699	ENSMUSG00000063229	Ldha	Ldh1|Ldhm|l7R2	lactate dehydrogenase A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71135279-4	chr17	71135177	71135377	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48255.0	NM_001357791	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28277713-4	chr7	28277602	28277802	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177427)	promoter-TSS (NM_001177427)	-4.0	NM_001177427	434156.0	Mm.118535	NM_001177427	ENSMUSG00000070705	Eid2b	3010005C08Rik	EP300 interacting inhibitor of differentiation 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-108658152-3	chr6	108658061	108658261	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr	intron (NR_104577, intron 1 of 6)	intron (NR_104577, intron 1 of 6)	-2468.0	NM_011498	20893.0	Mm.2436	NM_011498	ENSMUSG00000030103	Bhlhe40	Bhlhb2|C130042M06Rik|CR8|Clast5|Dec1|Sharp2|Stra13|Stra14	basic helix-loop-helix family, member e40	protein-coding	7.01505771941583	5.98178531147755	6.68683357145148	6.50488467879706	6.68886342582526	7.31868367968024	6.72585720095415	7.15758072730023	0.415815985632497	0.0696950115418428	0.396805163783153
Merged-chr5-28004603-4	chr5	28004510	28004710	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66802.0	NM_153526	231070.0	Mm.30221	NM_153526	ENSMUSG00000045294	Insig1	1810013C12Rik|Insig-1	insulin induced gene 1	protein-coding	3.68927705051443	1.71874992719889	3.16108068529559	3.60142823084089	2.83685386448252	3.78446549214147	2.85087302124372	3.41910801418186	0.0566702849312785	0.935388290570949	0.998431161219273
Merged-chr5-67257603-2	chr5	67257488	67257688	+	652.5	f0_c57.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-2977.0	NM_001285452	67878.0	Mm.23217	NM_028975	ENSMUSG00000037720	Tmem33	1110006G02Rik|1600019D15Rik|2410089A21Rik|2700052H22Rik|5430406L04Rik|AA388285|AI314185|AI426615|db83	transmembrane protein 33	protein-coding	2.65489073109305	3.20979578883439	3.03492895952993	1.30858515456959	1.45937531298488	1.67275268259255	1.0657553402612	1.03055534735564	-3.51442010446206	0.00163939673777733	0.0290110354865079
Merged-chr8-121949547-2	chr8	121949447	121949647	+	679.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001110100)	promoter-TSS (NM_001110100)	-945.0	NM_016812	53325.0	Mm.287163	NM_016812	ENSMUSG00000025316	Banp	AA408158|SMAR1	BTG3 associated nuclear protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-100682502-2	chr15	100682448	100682648	+	812.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_033612, intron 5 of 7)	intron (NM_033612, intron 5 of 7)	5372.0	NM_033612	109901.0	Mm.2131	NM_033612	ENSMUSG00000023031	Cela1	1810009A17Rik|1810062B19Rik|Ela-1|Ela1|PC-TsF	chymotrypsin-like elastase family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-145292826-2	chr7	145292726	145292926	+	785.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8083.0	NM_145379	211577.0	Mm.215151	NM_145379	ENSMUSG00000031070	Mrgprf	BC019711|Mgrc|MrgF	MAS-related GPR, member F	protein-coding	-1.84436392554074	-1.52091821270385	-1.82290882857571	-1.83054882630441	-1.84220491470818	-1.81159244170985	-1.82080331928423	-1.82918127036376	-1.56828060379516	0.655578384384393	1
Merged-chr17-42926786-2	chr17	42926686	42926886	+	702.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-50362.0	NM_009847	12488.0	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-85698142-4	chr18	85698002	85698202	+	811.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	-696850.0	NM_001360910	246317.0	Mm.329578	NM_144946	ENSMUSG00000050321	Neto1	AI851453|Btcl1|C130005O10Rik	neuropilin (NRP) and tolloid (TLL)-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-36471715-2	chr3	36471615	36471815	+	545.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009673, intron 2 of 12)	intron (NM_009673, intron 2 of 12)	3809.0	NR_105976	102466786.0		NR_105976	ENSMUSG00000098808	Mir7009	Gm27472|mmu-mir-7009	microRNA 7009	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-8506251-3	chr17	8506151	8506351	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20550.0	NM_001290707	23984.0	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98941987-4	chr11	98941888	98942088	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177303, intron 1 of 8)	intron (NM_001177303, intron 1 of 8)	2277.0	NM_001177303	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-100445453-4	chr12	100445352	100445552	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033213, intron 5 of 19)	intron (NM_001033213, intron 5 of 19)	75370.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-64884107-4	chr16	64884001	64884201	+	864.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	32100.0	NM_178647	106143.0	Mm.10160	NM_178647	ENSMUSG00000054604	Cggbp1	AA960172|AL023996|AW045841	CGG triplet repeat binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-99435361-4	chr6	99435257	99435457	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053202)	promoter-TSS (NM_053202)	-12.0	NM_053202	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123871466-1	chr5	123871366	123871566	+	659.0	f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-5950.0	NM_030701	80885.0	Mm.440567	NM_030701	ENSMUSG00000045502	Hcar2	Gpr109a|Gpr109b|HM74|Niacr1|PUMA-G|Pumag|mHM74b	hydroxycarboxylic acid receptor 2	protein-coding	0.533207873217682	1.26527092643684	0.556797081536877	1.53429014534323	0.535426213789616	1.27788740853435	0.559293419193298	1.04831496056468	-0.682860914528949	0.686150830902858	0.996533206832645
Merged-chr2-24367141-4	chr2	24367045	24367245	+	979.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355231)	promoter-TSS (NM_001355231)	-530.0	NM_001355231	215632.0	Mm.490434	NM_177611	ENSMUSG00000026979	Psd4	BC046518|EFA6B	pleckstrin and Sec7 domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-31675318-2	chr11	31675217	31675417	+	648.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3455.0	NM_001024919	69556.0	Mm.34183	NM_001024919	ENSMUSG00000044502	Bod1	2310022M17Rik|BOD2.1|Fam44b	biorientation of chromosomes in cell division 1	protein-coding	2.82477653122574	1.31466018729607	1.53896468320891	2.15181755557584	2.52317284526481	2.65618592368153	1.54983419648409	2.48339763171652	0.557572825782111	0.574757067092393	0.965173523029741
Merged-chr9-119345719-1	chr9	119345619	119345819	+	881.0	f1_c57bl6.idr	intron (NM_130864, intron 5 of 11)	intron (NM_130864, intron 5 of 11)	4425.0	NM_001357516	113868.0	Mm.205266	NM_130864	ENSMUSG00000036138	Acaa1a	Acaa|Acaa1|D9Ertd25e|PTL	acetyl-Coenzyme A acyltransferase 1A	protein-coding	-0.570176278079204	-0.828172689240768	-0.832418311687752	-0.201448708538692	-0.838185769364555	-0.825368027620195	-0.831734101493321	-0.834392483589968	-3.09671510812096	0.295048739405684	1
Merged-chr1-74398260-4	chr1	74398151	74398351	+	946.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_153088)	TTS (NM_153088)	3941.0	NR_029743	387219.0		NR_029743	ENSMUSG00000065468	Mir26b	Mirn26b|mir-26b|mmu-mir-26b	microRNA 26b	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-134097321-5	chr4	134097163	134097363	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2190.0	NM_013706	23833.0	Mm.24130	NM_013706	ENSMUSG00000000682	Cd52	AI463198|B7|B7-Ag|CAMPATH-1|CLS1|MB7	CD52 antigen	protein-coding	4.42500574574603	4.5325050776656	3.71031208106517	4.1655957237809	4.60597327606799	4.56322110746228	4.25293555428997	4.57826621607846	0.342469603602289	0.389094116167151	0.878578793881975
Merged-chr13-9185329-2	chr13	9185229	9185429	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-91196.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-68852643-1	chr11	68852543	68852743	+	1000.0	f0_balb.idr	intron (NM_023668, intron 1 of 8)	CpG	488.0	NM_023668	83431.0	Mm.31979	NM_023668	ENSMUSG00000018736	Ndel1	2600006O07Rik|MITAP1|NUDEL|mNudel	nudE neurodevelopment protein 1 like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-33276505-3	chr14	33276426	33276626	+	862.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153800, intron 3 of 10)	B4A|SINE|B4	59703.0	NM_153800	239027.0	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-54227822-7	chr14	54227737	54227937	+	878.714294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26092.0	NM_001113358	13135.0	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	1.49662804261004	1.44624862258405	0.853486890887231	1.86209913954584	1.51051433607772	0.872093001117726	1.65491278956516	0.843630540912073	-0.663858596747811	0.632586134292277	0.982230082053879
Merged-chr16-44766247-2	chr16	44766147	44766347	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021325, intron 1 of 6)	intron (NM_021325, intron 1 of 6)	511.0	NM_021325	57781.0	Mm.416152	NM_021325	ENSMUSG00000022667	Cd200r1	CD200R|Mox2r|OX2R	CD200 receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-12796772-4	chr19	12796667	12796867	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_024093)	promoter-TSS (NR_024093)	574.0	NM_001361971	107321.0	Mm.313136	NM_134152	ENSMUSG00000024696	Lpxn	4933402K05Rik|A530083L21Rik|AV278559|LDPL	leupaxin	protein-coding	-2.18308165884198	-2.15547475440471	-2.16382331017202	-2.1706810624505	-2.18114370519566	-2.15366558754311	-2.03057248461154	-2.16945352807143	0.759018020146679	0.829933115115583	1
Merged-chr13-67062413-2	chr13	67062313	67062513	+	558.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1243.0	NM_001166218	78251.0	Mm.297247	NM_001166218	ENSMUSG00000090641	Zfp712	4921504N20Rik|mszf31|mszf89	zinc finger protein 712	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-105633213-2	chr7	105633113	105633313	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_029802)	TTS (NM_029802)	358.0	NM_018880	55992.0	Mm.29290	NM_018880	ENSMUSG00000036989	Trim3	BERP1|HAC1|Rnf22	tripartite motif-containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91453356-2	chr16	91453256	91453456	+	555.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A|LTR|ERVL-MaLR	-11748.0	NR_077219	100503120.0	Mm.387130	NR_077219	ENSMUSG00000084866	A930006K02Rik	-	RIKEN cDNA A930006K02 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-70925020-4	chr17	70924915	70925115	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64415.0	NR_035427	100316676.0		NR_035427	ENSMUSG00000080468	Mir1195	Mirn1195|mmu-mir-1195	microRNA 1195	ncRNA	5.57758930591077	5.35580788027402	4.27924353887827	4.85536090057979	5.80762819901159	5.08989799797903	4.55400159585489	5.15878777502968	0.148907908669584	0.692417584159452	0.99740158133691
Merged-chr4-138278327-2	chr4	138278227	138278427	+	619.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_010623, intron 5 of 14)	intron (NM_010623, intron 5 of 14)	16076.0	NM_010623	16559.0	Mm.271936	NM_010623	ENSMUSG00000028758	Kif17	5930435E01Rik|AW492270|Kif17b|mKIAA1405	kinesin family member 17	protein-coding	-0.700064241511417	-0.186671140929496	-0.692852367725508	-0.695563882069579	-0.699394869705802	-0.177296101845517	-0.692077155152847	-0.695090216270211	0.0394491945098347	0.989215944639676	1
Merged-chr1-80822366-4	chr1	80822289	80822489	+	967.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63836.0	NM_175291	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-98832133-2	chr7	98832033	98832233	+	632.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2979.0	NM_001285794	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-95793087-4	chr15	95792986	95793186	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 1 of 19)	intron (NM_175344, intron 1 of 19)	2243.0	NM_001253813	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-51744335-2	chr13	51744235	51744435	+	771.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001281880, intron 2 of 16)	intron (NM_001281880, intron 2 of 16)	49412.0	NM_001281880	20354.0	Mm.33903	NM_013660	ENSMUSG00000021451	Sema4d	CD100|Semacl2|Semaj|Semcl2|coll-4	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83645232-1	chr11	83645132	83645332	+	641.0	f0_balb.idr	Intergenic	Intergenic	4146.0	NM_011337	20302.0	Mm.1282	NM_011337	ENSMUSG00000000982	Ccl3	AI323804|G0S19-1|LD78alpha|MIP-1alpha|MIP1-(a)|MIP1-alpha|Mip1a|Scya3	chemokine (C-C motif) ligand 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-10913301-2	chr17	10913201	10913401	+	713.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001317726, intron 1 of 6)	Lx7|LINE|L1	72942.0	NM_016694	50873.0	Mm.311110	NM_016694	ENSMUSG00000023826	Park2	PRKN	Parkinson disease (autosomal recessive, juvenile) 2, parkin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-55040245-4	chr13	55040147	55040347	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359758, intron 11 of 14)	intron (NM_001359758, intron 11 of 14)	-18862.0	NM_001033245	212032.0	Mm.267479	NM_001033245	ENSMUSG00000025877	Hk3	HK III|HK-III	hexokinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-53948765-1	chr5	53948665	53948865	+	709.0	f0_balb.idr	Intergenic	Intergenic	-49758.0	NM_001081103	116873.0	Mm.265985	NM_054083	ENSMUSG00000039156	Stim2	-	stromal interaction molecule 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-63088500-2	chr14	63088400	63088600	+	817.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33427.0	NR_046019	72609.0	Mm.387101	NR_046019		2700070H01Rik	-	RIKEN cDNA 2700070H01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-4085802-2	chr7	4085702	4085902	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_033568, intron 6 of 8)	intron (NR_033568, intron 6 of 8)	-22598.0	NM_001302676	52855.0	Mm.290880	NM_178611	ENSMUSG00000055541	Lair1	5133400O11Rik|BB115266|D7Bwg0421e|Lair-1	leukocyte-associated Ig-like receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-21389638-3	chr12	21389532	21389732	+	956.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011739)	TTS (NM_011739)	-16000.0	NM_009615	11491.0	Mm.27681	NM_009615	ENSMUSG00000052593	Adam17	CD156b|Tace	a disintegrin and metallopeptidase domain 17	protein-coding	4.30236208845711	4.78710716954162	5.21232848156391	4.80368128176032	1.95858747326197	4.44743184628251	1.63610187541318	1.55583553124759	-2.36562864352378	0.113672305593789	0.52821081429678
Merged-chr16-25050824-2	chr16	25050724	25050924	+	793.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8815.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3379205-1	chr19	3379105	3379305	+	1000.0	f0_balb.idr	intron (NM_013495, intron 15 of 18)	intron (NM_013495, intron 15 of 18)	-9652.0	NM_001039658	17771.0	Mm.209941	NM_010841	ENSMUSG00000024905	Tesmin	Mtl5	testis expressed metallothionein like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-88372673-4	chr10	88372580	88372780	+	993.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6732.0	NM_001004164	432486.0	Mm.335190	NM_001004164	ENSMUSG00000035311	Gnptab	EG432486|mKIAA1208	N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-87640511-4	chr1	87640404	87640604	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110192, intron 2 of 26)	intron (NM_001110192, intron 2 of 26)	20192.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-128134733-4	chr6	128134630	128134830	+	884.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175414, intron 1 of 8)	intron (NM_175414, intron 1 of 8)	8848.0	NM_175414	109246.0	Mm.21814	NM_175414	ENSMUSG00000030352	Tspan9	6720474K14Rik|9430079M16Rik|AU018597|Tspan-9	tetraspanin 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-66240547-3	chr14	66240446	66240646	+	806.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	-26722.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-47362408-3	chr13	47362303	47362503	+	756.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	168400.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-22110774-2	chr9	22110674	22110874	+	627.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	3239.0	NR_106052	102466221.0		NR_106052	ENSMUSG00000098646	Mir7084	Gm27978|mmu-mir-7084	microRNA 7084	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71531066-2	chr17	71530966	71531166	+	777.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	-4209.0	NM_023294	67052.0	Mm.225956	NM_023294	ENSMUSG00000024056	Ndc80	2610020P18Rik|AV139730|HEC|HEC1|Kntc2	NDC80 kinetochore complex component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34025784-2	chr17	34025673	34025873	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029800)	promoter-TSS (NR_029800)	-681.0	NR_029800	723823.0		NR_029800	ENSMUSG00000065555	Mir219a-1	Mir219-1|Mirn219-1|mir-219a-1|mmu-mir-219a-1	microRNA 219a-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-140573845-1	chr4	140573745	140573945	+	793.0	f1_c57bl6.idr	intron (NM_001112723, intron 14 of 26)	intron (NM_001112723, intron 14 of 26)	74911.0	NM_001112723	72754.0	Mm.29329	NM_172415	ENSMUSG00000040964	Arhgef10l	2810441C07Rik	Rho guanine nucleotide exchange factor (GEF) 10-like	protein-coding	-0.101368628052747	-0.400170137585478	-0.406074597160908	-0.410676869779394	-0.41725268263496	-0.398848412263725	-0.404766511922368	0.741181963203857	2.41202700527944	0.347295071139953	1
Merged-chr8-122880128-4	chr8	122880006	122880206	+	956.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31732.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	2.00363951405127	1.42573811955593	1.72174801471482	1.91768421504734	1.93265134974419	1.43366010637167	1.5795662691576	2.20832930434695	0.129448222011909	0.900006993779749	0.998431161219273
Merged-chr8-127815541-4	chr8	127815474	127815674	+	897.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA4A|LINE|L1	462651.0	NR_105822	102465212.0		NR_105822	ENSMUSG00000099326	Mir21c	Gm28013|mmu-mir-21c	microRNA 21c	ncRNA	-0.145576319733667	0.394154872311904	0.145082639069572	-0.141213301154479	-0.144931480703227	-0.134279235730514	0.265710119410326	-0.140750320145593	-1.07779056974722	0.653273677160523	1
Merged-chr4-133445830-1	chr4	133445730	133445930	+	584.0	f1_balb.idr	Intergenic	Intergenic	-34303.0	NM_175307	100342.0	Mm.204656	NM_175307	ENSMUSG00000046694	Fam46b	4732473B16Rik|AU045678|AU046069	family with sequence similarity 46, member B	protein-coding	-1.01372586573209	-0.994162335729209	-1.00660846485972	-1.00980964752674	-1.01314284338918	-0.348553270733828	-1.00379093403596	-0.832227498114102	3.00260083539824	0.32495838854254	1
Merged-chr15-51911932-3	chr15	51911845	51912045	+	848.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34504.0	NM_030132	78581.0	Mm.176347	NM_030132	ENSMUSG00000022313	Utp23	1700010I21Rik|AI662478|BB238373|D530033C11Rik	UTP23 small subunit processome component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-52945830-2	chr2	52945730	52945930	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	87962.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102387893-2	chr12	102387793	102387993	+	899.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177620, intron 9 of 9)	intron (NM_177620, intron 9 of 9)	51920.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-95204154-4	chr8	95204061	95204261	+	719.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61621.0	NM_001145831	16582.0	Mm.378951	NM_010631	ENSMUSG00000031788	Kifc3	AI325457|BB123200	kinesin family member C3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-34249267-2	chr5	34249167	34249367	+	574.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001015039, intron 1 of 12)	intron (NM_001015039, intron 1 of 12)	39057.0	NM_001015039	231125.0	Mm.113388	NM_001015039	ENSMUSG00000037224	Zfyve28	9630058O20Rik|Gm146|mKIAA1643	zinc finger, FYVE domain containing 28	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-110193269-1	chr8	110193169	110193369	+	661.0	f0_c57.idr	Intergenic	L2|LINE|L2	-24691.0	NM_146215	234728.0	Mm.275341	NM_146215	ENSMUSG00000046441	Cmtr2	AU022703|C730036L12Rik|Ftsjd1|MTr2	cap methyltransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-40410053-3	chr1	40409950	40410150	+	968.4722289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVL-int|LTR|ERVL	-19520.0	NM_001294171	17082.0	Mm.289824	NM_010743	ENSMUSG00000026069	Il1rl1	DER4|Fit-1|Ly84|ST2L|St2|St2-rs1|T1|T1/ST2	interleukin 1 receptor-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-44172034-2	chr16	44171934	44172134	+	703.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-1363.0	NM_001029889	207806.0	Mm.310566	NM_001029889	ENSMUSG00000068284	Usf3	5530400K22Rik|Gm1779|Gm608|mKIAA2018	upstream transcription factor family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-81501195-3	chr17	81501099	81501299	+	909.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 2 of 8)	intron (NR_104580, intron 2 of 8)	237188.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-111774001-3	chr10	111773899	111774099	+	928.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	100377.0	NR_046029	629206.0	Mm.391444	NR_046029	ENSMUSG00000112533	Gm20758	-	predicted gene, 20758	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5951558-2	chr19	5951458	5951658	+	645.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164057, intron 8 of 17)	intron (NM_001164057, intron 8 of 17)	12648.0	NM_001164057	18969.0	Mm.209931	NM_008893	ENSMUSG00000024833	Pola2	AI573378	polymerase (DNA directed), alpha 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101212049-2	chr11	101211949	101212149	+	888.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_007970, intron 6 of 20)	intron (NM_007970, intron 6 of 20)	14414.0	NM_007970	14055.0	Mm.5027	NM_007970	ENSMUSG00000006920	Ezh1	ENX-2	enhancer of zeste 1 polycomb repressive complex 2 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-163642938-4	chr2	163642823	163643023	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012032, intron 1 of 9)	RLTR4_Mm|LTR|ERV1	-1927.0	NR_028113	68386.0	Mm.410649	NR_028113	ENSMUSG00000058812	0610039K10Rik	-	RIKEN cDNA 0610039K10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-6109039-2	chr18	6108939	6109139	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039692, intron 3 of 18)	intron (NM_001039692, intron 3 of 18)	27059.0	NM_029277	75415.0	Mm.239675	NM_029277	ENSMUSG00000041225	Arhgap12	2810011M08Rik	Rho GTPase activating protein 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21146923-4	chr9	21146833	21147033	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016742, intron 1 of 7)	intron (NM_016742, intron 1 of 7)	2973.0	NM_016742	12539.0	Mm.32331	NM_016742	ENSMUSG00000019471	Cdc37	p50|p50Cdc37	cell division cycle 37	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-101359130-2	chr4	101359030	101359230	+	659.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_040640, intron 1 of 3)	intron (NR_040640, intron 1 of 3)	-2882.0	NR_040708	77866.0	Mm.137053	NR_040708	ENSMUSG00000086782	E130102H24Rik	-	RIKEN cDNA E130102H24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-4873932-4	chr11	4873814	4874014	+	949.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008698)	promoter-TSS (NM_008698)	-37.0	NM_008698	18082.0	Mm.293716	NM_008698	ENSMUSG00000034285	Nipsnap1	-	nipsnap homolog 1	protein-coding	2.02416937335619	2.60528200293972	1.78625908172024	3.55101425055772	2.75226038925849	2.4739164157169	3.31203123192645	3.06418682091281	0.430633471132545	0.585949667941234	0.967449368090758
Merged-chr13-38193040-3	chr13	38192942	38193142	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_023842, exon 23 of 24)	exon (NM_023842, exon 23 of 24)	-11897.0	NM_026382	67797.0	Mm.250783	NM_026382	ENSMUSG00000021431	Snrnp48	1110050F08Rik|6530403A03Rik|C6orf151	small nuclear ribonucleoprotein 48 (U11/U12)	protein-coding	2.35803261060829	3.48845671237111	2.41944241663698	2.33617652820506	4.51358892118623	4.62486204277769	4.11160487737886	3.61465116209377	2.30525345576747	7.48916001251091e-05	0.00245953307929122
Merged-chr4-131918803-4	chr4	131918641	131918841	+	866.966675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_102394, intron 1 of 2)	intron (NR_102394, intron 1 of 2)	1288.0	NR_102394	545681.0	Mm.2478	NR_102393	ENSMUSG00000085667	Gm12992	-	predicted gene 12992	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106783713-2	chr11	106783611	106783811	+	914.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_037224)	promoter-TSS (NR_037224)	-952.0	NR_037224	100526469.0		NR_037224	ENSMUSG00000093273	Mir3064	mir-3064|mmu-mir-3064	microRNA 3064	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-55088194-4	chr1	55088094	55088294	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008303)	promoter-TSS (NM_008303)	46.0	NM_008303	15528.0	Mm.215667	NM_008303	ENSMUSG00000073676	Hspe1	10kDa|Hsp10|mt-cpn10	heat shock protein 1 (chaperonin 10)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-7845785-4	chr6	7845681	7845881	+	928.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_052993, intron 1 of 3)	intron (NM_052993, intron 1 of 3)	557.0	NM_052993	94192.0	Mm.102752	NM_052993	ENSMUSG00000042460	C1galt1	2210410E06Rik|AV284120|T-synthase	core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-34784674-2	chr2	34784574	34784774	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_145522, exon 6 of 8)	exon (NM_145522, exon 6 of 8)	12584.0	NM_022310	14828.0	Mm.330160	NM_022310	ENSMUSG00000026864	Hspa5	AL022860|AU019543|Bip|D2Wsu141e|D2Wsu17e|Grp78|Hsce70|SEZ-7|Sez7|baffled|mBiP	heat shock protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-58582182-4	chr9	58582097	58582297	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009145)	promoter-TSS (NM_009145)	-43.0	NM_001293673	20320.0	Mm.15125	NM_009145	ENSMUSG00000032336	Nptn	AW554172|SDR-1|Sdfr1	neuroplastin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-25360711-4	chr10	25360566	25360766	+	998.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358754, intron 1 of 16)	intron (NM_001358754, intron 1 of 16)	868.0	NM_001358751	13822.0	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-6475548-2	chr17	6475448	6475648	+	566.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24554.0	NR_033520	547127.0	Mm.297552	NM_001045538		Tmem181b-ps	Tmem181b	transmembrane protein 181B, pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115862112-2	chr11	115862012	115862212	+	589.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38027.0	NM_183259	66528.0	Mm.275740	NM_183259	ENSMUSG00000048442	Smim5	2210020M01Rik	small integral membrane protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-18319633-4	chr3	18319533	18319733	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-76295.0	NM_007825	13123.0	Mm.316000	NM_007825	ENSMUSG00000039519	Cyp7b1	AW261589|D3Ertd552e|hct-1	cytochrome P450, family 7, subfamily b, polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-91786817-1	chr14	91786717	91786917	+	573.0	f1_balb.idr	Intergenic	Intergenic	1659926.0	NR_045712	74967.0	Mm.390704	NR_045712	ENSMUSG00000115001	4930474H20Rik	-	RIKEN cDNA 4930474H20 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-92500930-2	chr5	92500830	92501030	+	736.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007644, intron 1 of 11)	ID_B1|SINE|B4	4727.0	NM_007644	12492.0	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-39688820-2	chr1	39688720	39688920	+	558.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145660, intron 6 of 14)	intron (NM_001145660, intron 6 of 14)	32169.0	NM_001145660	619289.0	Mm.334107	NM_001145660	ENSMUSG00000057173	Rfx8	4933400N17Rik	regulatory factor X 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97041518-4	chr11	97041432	97041632	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357808)	promoter-TSS (NM_001357808)	-28.0	NM_001357807	107732.0	Mm.208946	NM_026154	ENSMUSG00000001445	Mrpl10	0610040E02Rik|C78440|MRP-L8|Rpml8	mitochondrial ribosomal protein L10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80640723-3	chr7	80640606	80640806	+	939.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040343, intron 4 of 4)	intron (NR_040343, intron 4 of 4)	4689.0	NR_040343	100504375.0	Mm.322881	NR_040343	ENSMUSG00000084821	Gm15880	-	predicted gene 15880	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-8769320-4	chr16	8769227	8769427	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30985.0	NM_001003918	252870.0	Mm.295330	NM_001003918	ENSMUSG00000022710	Usp7	2210010O09Rik|AA409944|AA617399|AU019296|AW548146|C80752|Hausp	ubiquitin specific peptidase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127675332-4	chr10	127675210	127675410	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1755.0	NM_173732	210035.0	Mm.251075	NM_173732	ENSMUSG00000040195	Nemp1	Tmem194|Tmem194a	nuclear envelope integral membrane protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118368565-2	chr11	118368465	118368665	+	792.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-13154.0	NM_011594	21858.0	Mm.206505	NM_011594	ENSMUSG00000017466	Timp2	D11Bwg1104e|Timp-2	tissue inhibitor of metalloproteinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-109298275-4	chr13	109298210	109298410	+	985.662476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011056, intron 3 of 16)	intron (NM_011056, intron 3 of 16)	-26434.0	NR_030644	100124489.0		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-35996039-2	chr12	35995939	35996139	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011783, intron 3 of 7)	intron (NM_011783, intron 3 of 7)	3114.0	NM_011783	23795.0	Mm.7244	NM_011783	ENSMUSG00000020581	Agr2	Agr2h|Gob-4|HAG-2|XAG-2|mAG-2	anterior gradient 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127050292-4	chr10	127050174	127050374	+	930.6083369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010009, exon 5 of 9)	exon (NM_010009, exon 5 of 9)	2028.0	NM_010009	13115.0	Mm.6216	NM_010009	ENSMUSG00000006724	Cyp27b1	Cp2b|Cyp1|Cyp27b|Cyp40|P450c1|Pddr|Vdd1|Vddr|VddrI|Vdr	cytochrome P450, family 27, subfamily b, polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-84657408-6	chr3	84657273	84657473	+	732.388916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8819.0	NM_177260	320782.0	Mm.107370	NM_177260	ENSMUSG00000056498	Tmem154	9930117H01Rik	transmembrane protein 154	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-112357764-2	chr5	112357664	112357864	+	800.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359853, intron 4 of 13)	intron (NM_001359853, intron 4 of 13)	-1731.0	NM_001039228	625424.0	Mm.389677	NM_001039228	ENSMUSG00000051503	Gm6583	EG625424	predicted gene 6583	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-111824347-4	chr13	111824227	111824427	+	850.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-15334.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	1.68046901039508	2.23046385779214	2.95172403456759	1.31399439657344	2.67412304056007	2.73636971823211	2.01391426094163	2.46240020722709	0.625043787983122	0.501104459084255	0.938226730357636
Merged-chr12-112594675-4	chr12	112594587	112594787	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198411, intron 1 of 22)	intron (NM_198411, intron 1 of 22)	5903.0	NM_198411	70435.0	Mm.250193	NM_198411	ENSMUSG00000037679	Inf2	2610204M08Rik|AA589465|AW125550|EG629699	inverted formin, FH2 and WH2 domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-48661396-2	chr10	48661296	48661496	+	635.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3B|LINE|L1	1126541.0	NM_001358866	14806.0	Mm.185993	NM_010349	ENSMUSG00000056073	Grik2	AW124492|C130030K03Rik|GluK2|Glur-6|Glur6|Glurbeta2	glutamate receptor, ionotropic, kainate 2 (beta 2)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-160593290-2	chr2	160593190	160593390	+	826.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52607.0	NM_009408	21969.0	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-51358835-10	chr3	51358696	51358896	+	892.056641	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-18152.0	NM_023502	69257.0	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-123110880-3	chr8	123110827	123111027	+	841.694458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5952.0	NR_106047	102465654.0		NR_106047	ENSMUSG00000098550	Mir7079	Gm27278|mmu-mir-7079	microRNA 7079	ncRNA	3.43149519682171	3.11533697960303	3.22389261592018	3.31312501135425	3.6437539023129	4.80631257959967	2.75857028610642	2.13001209595125	0.67197502584832	0.326876783215577	0.829199211128231
Merged-chr11-100762471-1	chr11	100762371	100762571	+	543.0	f1_balb.idr	intron (NM_010410, intron 1 of 1)	intron (NM_010410, intron 1 of 1)	460.0	NM_010410	15171.0	Mm.10096	NM_010410	ENSMUSG00000045471	Hcrt	PPOX	hypocretin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-96983393-2	chr5	96983293	96983493	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14296.0	NM_080708	140780.0	Mm.281490	NM_080708	ENSMUSG00000034663	Bmp2k	4933417M22Rik|AA673486|AV128808|BIKE	BMP2 inducible kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-9487112-2	chr18	9487007	9487207	+	646.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36953.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	0.779762027800143	0.650730164401739	1.47680633800806	0.631214415776463	1.42727463212224	0.653187595181038	1.28148756222671	1.11345337823721	0.887895689670584	0.567711441911175	0.962562732139494
Merged-chr6-137756522-4	chr6	137756420	137756620	+	752.637512	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172733, intron 1 of 8)	B3|SINE|B2	1943.0	NM_172733	232449.0	Mm.29181	NM_172733	ENSMUSG00000030225	Dera	2010002D22Rik|2500002K03Rik|DEOC	deoxyribose-phosphate aldolase (putative)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-30977423-4	chr16	30977337	30977537	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198626, intron 3 of 3)	intron (NM_198626, intron 3 of 3)	103995.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-37105151-1	chr13	37105051	37105251	+	547.0	f0_balb.idr	Intergenic	Intergenic	-54907.0	NM_001166391	74145.0	Mm.235105	NM_028784	ENSMUSG00000039109	F13a1	1200014I03Rik|AI462306|F13a	coagulation factor XIII, A1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-45302641-2	chr19	45302541	45302741	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-61093.0	NM_001360122	12234.0	Mm.119717	NM_009771	ENSMUSG00000025217	Btrc	Beta-Trcp1|E3RS-IkappaB|E3RSIkappaB|FWD1|Fbw1a|HOS|SCF b-TRCP|Slimb|b-TrCP|beta-TrCP	beta-transducin repeat containing protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180924906-2	chr1	180924806	180925006	+	605.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10116.0	NM_010094	13590.0	Mm.378911	NM_010094	ENSMUSG00000038793	Lefty1	AI450052|Ebaf|Leftb|Stra3|Tgfb4|lefty|lefty-1	left right determination factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114897510-3	chr11	114897398	114897598	+	988.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_170758, intron 3 of 6)	RSINE1|SINE|B4	7457.0	NM_170758	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-89282783-4	chr6	89282686	89282886	+	766.31665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131021, intron 1 of 3)	L1M4|LINE|L1	2939.0	NR_131021	75131.0	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	Gm44205	RIKEN cDNA 4930512J16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-96924440-2	chr13	96924340	96924540	+	783.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166065)	promoter-TSS (NM_001166065)	-249.0	NM_001166065	218476.0	Mm.483490	NM_001166065	ENSMUSG00000091387	Gcnt4	C2gnt3|Gm279|Gm73	glucosaminyl (N-acetyl) transferase 4, core 2 (beta-1,6-N-acetylglucosaminyltransferase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-57013363-2	chr17	57013263	57013463	+	952.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2075.0	NM_133801	98053.0	Mm.24632	NM_133801	ENSMUSG00000002658	Gtf2f1	2810405L04Rik|C76800|RAP74	general transcription factor IIF, polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139792639-3	chr5	139792522	139792722	+	856.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010757, intron 1 of 2)	intron (NM_010757, intron 1 of 2)	1086.0	NM_010757	17135.0	Mm.157313	NM_010757	ENSMUSG00000018143	Mafk	AW061068|NF-E2|Nfe2u	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein K (avian)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95927007-2	chr3	95926907	95927107	+	728.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2250.0	NM_001253758	66471.0	Mm.218657	NM_023210	ENSMUSG00000015749	Anp32e	2810018A15Rik|AI047746|AI326868|CPD1|LANP-L|LANPL|mLANP-L	acidic (leucine-rich) nuclear phosphoprotein 32 family, member E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-75400064-4	chr1	75399956	75400156	+	725.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001173477)	promoter-TSS (NM_001173477)	-29.0	NM_001173477	11790.0	Mm.275397	NM_007463	ENSMUSG00000026207	Speg	AW125581|Apeg1|BPEG|D1Bwg1450e|SPEGalpha|SPEGbeta|mKIAA1297	SPEG complex locus	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-14501693-2	chr9	14501593	14501793	+	846.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_023153, intron 1 of 6)	intron (NM_023153, intron 1 of 6)	1074.0	NM_023153	66070.0	Mm.245938	NM_023153	ENSMUSG00000004096	Cwc15	0610040D20Rik|2900052N06Rik|Ed1|c11orf5|mED1	CWC15 spliceosome-associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-146198560-2	chr6	146198460	146198660	+	621.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019923, intron 45 of 56)	intron (NM_019923, intron 45 of 56)	264438.0	NM_010656	16651.0	Mm.49689	NM_010656	ENSMUSG00000030255	Sspn	Krag	sarcospan	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111039221-4	chr12	111039147	111039347	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198023)	promoter-TSS (NM_198023)	-551.0	NM_198023	217864.0	Mm.23808	NM_198023	ENSMUSG00000037896	Rcor1	5730409O11|6720480E22Rik|AU042633|D12Wsu95e|Rocr1|mKIAA0071	REST corepressor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3767274-2	chr19	3767174	3767374	+	862.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001167886)	promoter-TSS (NM_001167886)	-147.0	NM_001167889	225888.0	Mm.278578	NM_144871	ENSMUSG00000045098	Kmt5b	AA117471|C630029K18Rik|Suv4-20h1|Suv420h1	lysine methyltransferase 5B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134425380-1	chr6	134425280	134425480	+	1000.0	f0_c57.idr	intron (NM_001355686, intron 2 of 5)	intron (NM_001355686, intron 2 of 5)	10952.0	NM_001355686	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	5.52885792902515	5.35214556565863	5.55391728981142	5.34217376223483	5.58607796305483	5.07708100394934	4.68839486951983	5.15514475241675	-0.317870280818516	0.288289791824119	0.793815200967874
Merged-chr13-56200117-1	chr13	56200017	56200217	+	561.0	f1_c57bl6.idr	Intergenic	Intergenic	-21232.0	NM_001168615	212937.0	Mm.116697	NM_145976	ENSMUSG00000049625	Tifab	-	TRAF-interacting protein with forkhead-associated domain, family member B	protein-coding	-0.208283783115327	-0.190719793063729	-0.196438776803222	0.56960718211407	-0.207177803637276	-0.189435193761239	-0.195174548196752	0.578527616610749	0.0282038014051437	0.990994131209618	1
Merged-chr5-135473251-2	chr5	135473151	135473351	+	681.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146001, intron 1 of 30)	B1F1|SINE|Alu	71871.0	NM_146001	215114.0	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-120326616-4	chr14	120326544	120326744	+	748.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360376, intron 2 of 8)	B4|SINE|B4	20192.0	NM_001360376	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-137728914-2	chr4	137728835	137729035	+	653.666626	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_138591, exon 24 of 24)	non-coding (NR_138591, exon 24 of 24)	4474.0	NR_138592	110351.0	Mm.180763	NM_029563	ENSMUSG00000041351	Rap1gap	1300019I11Rik|2310004O14Rik|AI427470|ARPP-90|Gap|Rap1GAP1|Rap1ga1	Rap1 GTPase-activating protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21088475-2	chr9	21088375	21088575	+	605.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_038081, intron 2 of 16)	intron (NR_038081, intron 2 of 16)	3513.0	NM_027911	71766.0	Mm.196137	NM_027911	ENSMUSG00000010205	Raver1	1300006N24Rik|AA050359|mKIAA1978	ribonucleoprotein, PTB-binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-83610684-2	chr8	83610584	83610784	+	702.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_018808, exon 3 of 3)	exon (NM_018808, exon 3 of 3)	2136.0	NM_001308227	81489.0	Mm.282092	NM_018808	ENSMUSG00000005483	Dnajb1	0610007I11Rik|DjB1|HSPF1|Hdj1|Hsp40	DnaJ heat shock protein family (Hsp40) member B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-59728610-4	chr13	59728509	59728709	+	742.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177711, exon 4 of 4)	exon (NM_177711, exon 4 of 4)	3143.0	NM_177711	238663.0	Mm.444776	NM_177711	ENSMUSG00000043986	Spata31d1d	4932411G14Rik|Fam75d1d	spermatogenesis associated 31 subfamily D, member 1D	protein-coding	3.69428642128967	3.22934928766352	3.3991798080519	3.77214367069568	3.56408751756952	2.72491591420053	3.33875200556948	2.54528677481457	-0.681024660469916	0.250201865958328	0.748509191602971
Merged-chr15-39775776-1	chr15	39775676	39775876	+	550.0	f1_c57bl6.idr	intron (NM_022722, intron 9 of 9)	intron (NM_022722, intron 9 of 9)	-21269.0	NR_045788	100503072.0	Mm.446661	NR_045788	ENSMUSG00000087695	Gm16291	-	predicted gene 16291	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70711220-2	chr8	70711120	70711320	+	607.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7323.0	NM_001195253	100502950.0	Mm.52981	NM_001195253	ENSMUSG00000095026	Gm3336	100041434|2410018E23Rik	predicted gene 3336	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-146778471-3	chr5	146778348	146778548	+	607.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011669, intron 1 of 8)	intron (NM_011669, intron 1 of 8)	16508.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-90221867-4	chr16	90221753	90221953	+	872.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011434, intron 1 of 4)	intron (NM_011434, intron 1 of 4)	1111.0	NM_011434	20655.0	Mm.276325	NM_011434	ENSMUSG00000022982	Sod1	B430204E11Rik|Cu/Zn-SOD|CuZnSOD|Ipo-1|Ipo1|SODC|Sod-1	superoxide dismutase 1, soluble	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-63134604-2	chr14	63134504	63134704	+	957.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007798, intron 3 of 9)	L2|LINE|L2	12142.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-76304869-4	chr16	76304774	76304974	+	837.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358238, intron 3 of 3)	intron (NM_001358238, intron 3 of 3)	68175.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25298183-4	chr7	25298056	25298256	+	953.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008776)	promoter-TSS (NM_008776)	-170.0	NM_001357350	18476.0	Mm.597	NM_008776	ENSMUSG00000005447	Pafah1b3	Pafahg|mus[g]	platelet-activating factor acetylhydrolase, isoform 1b, subunit 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-16303450-4	chr16	16303371	16303571	+	905.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_038046, exon 1 of 5)	non-coding (NR_038046, exon 1 of 5)	506.0	NM_198246	70120.0	Mm.37486	NM_198246	ENSMUSG00000022792	Yars2	2210023C10Rik|tyrRS	tyrosyl-tRNA synthetase 2 (mitochondrial)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-145211322-1	chr5	145211222	145211422	+	943.0	f1_c57bl6.idr	intron (NM_001359192, intron 2 of 3)	intron (NM_001359192, intron 2 of 3)	6763.0	NM_001359188	22757.0	Mm.332842	NM_016683	ENSMUSG00000055991	Zkscan5	AI132486|AI326970|Zfp95|hKraba1	zinc finger with KRAB and SCAN domains 5	protein-coding	0.533409558793043	0.872227900588783	0.601591078847989	0.29682473852427	0.291105377799481	0.974185615709044	0.302077224808991	0.297535655070446	-0.498596312777383	0.795951159189387	1
Merged-chr12-55468935-2	chr12	55468835	55469035	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23712.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70905310-2	chr8	70905210	70905410	+	632.833374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173013)	promoter-TSS (NM_173013)	-664.0	NM_173013	270058.0	Mm.248559	NM_173013	ENSMUSG00000019261	Map1s	6430517J16Rik|Bpy2ip1|Map8|Mtap1s|VCY2IP1	microtubule-associated protein 1S	protein-coding	-0.874383035844446	0.281005061985971	-0.863518643991718	-0.86754659555202	-0.873353833434182	-0.85685203640681	-0.862379133764754	-0.866838158521825	-3.83934602185047	0.166422907108263	1
Merged-chr15-103341882-2	chr15	103341782	103341982	+	648.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1796.0	NM_013866	29813.0	Mm.14099	NM_013866	ENSMUSG00000000552	Zfp385a	Hzf|Zfp385|Znf385a	zinc finger protein 385A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-46602184-4	chr4	46602082	46602282	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164804)	promoter-TSS (NM_001164804)	-253.0	NM_001164804	107684.0	Mm.416311	NM_178893	ENSMUSG00000028337	Coro2a	9030208C03Rik|AI563590|IR10	coronin, actin binding protein 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100398766-2	chr11	100398666	100398866	+	784.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010593)	promoter-TSS (NM_010593)	650.0	NR_132425	102635937.0	Mm.421398	NR_132425		Gm12348	-	predicted gene 12348	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-22011312-2	chr16	22011258	22011458	+	885.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357424, intron 1 of 15)	tRNA-Ala-GCY_|tRNA|tRNA	1874.0	NM_001357424	75826.0	Mm.297431	NM_029457	ENSMUSG00000022855	Senp2	2310007L05Rik|4930538C18Rik|AI646780|AW554757|Smt3ip2|SuPr-1|mKIAA1331	SUMO/sentrin specific peptidase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-65243467-1	chr13	65243367	65243567	+	540.0	f1_balb.idr	Intergenic	Intergenic	-35387.0	NM_178364	170936.0	Mm.151546	NM_178364	ENSMUSG00000021514	Zfp369	B930030B22Rik|D230020H11Rik|NRIF2	zinc finger protein 369	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21529821-2	chr9	21529721	21529921	+	621.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_206536, intron 2 of 5)	B1F1|SINE|Alu	3644.0	NM_206536	382062.0	Mm.325205	NM_206536	ENSMUSG00000057191	AB124611	Gm1706	cDNA sequence AB124611	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-135746286-4	chr1	135746168	135746368	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360782, intron 3 of 5)	intron (NM_001360782, intron 3 of 5)	17101.0	NM_007791	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-13600315-4	chr8	13600225	13600425	+	973.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 4 of 23)	intron (NM_009025, intron 4 of 23)	-37864.0	NM_001080781	66501.0	Mm.46136	NM_025601	ENSMUSG00000031452	1700029H14Rik	-	RIKEN cDNA 1700029H14 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-131255495-2	chr2	131255395	131255595	+	643.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-6513.0	NM_001355681	74450.0	Mm.101264	NM_153501	ENSMUSG00000037514	Pank2	4933409I19Rik|AI642621	pantothenate kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-59527517-3	chr11	59527456	59527656	+	868.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14013.0	NM_001359638	216799.0	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-65682583-1	chr18	65682483	65682683	+	1000.0	f1_balb.idr	intron (NM_001361052, intron 6 of 8)	intron (NM_001361052, intron 6 of 8)	-15685.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	-0.707666129468795	-0.698471909170974	-0.701498277481853	-0.546552428210431	-0.447246803162207	-0.697787848258902	-0.700831962721572	-0.185332614445615	2.21547915737181	0.418621817063207	1
Merged-chr13-64312715-4	chr13	64312661	64312861	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025370)	promoter-TSS (NM_025370)	-51.0	NM_025370	66129.0	Mm.491110	NM_025370	ENSMUSG00000021482	Aaed1	1110018J18Rik|AI849003	AhpC/TSA antioxidant enzyme domain containing 1	protein-coding	6.96396287684538	6.97439525076915	6.36601222246784	6.33674264513775	6.61619096417056	6.68539797130932	6.04859645079382	6.72255408071438	-0.160847726745661	0.478410853358604	0.928092227925527
Merged-chr5-140992461-4	chr5	140992367	140992567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175362, intron 1 of 24)	L1ME3|LINE|L1	8129.0	NM_175362	108723.0	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127285257-2	chr10	127285157	127285357	+	574.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_033072, exon 7 of 13)	exon (NM_033072, exon 7 of 13)	3761.0	NM_001347171	110962.0	Mm.372826	NM_033072	ENSMUSG00000025409	Mbd6	D10Wsu93e	methyl-CpG binding domain protein 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-58588231-3	chr11	58588104	58588304	+	818.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7367.0	NM_207153	258261.0	Mm.303171	NM_207153	ENSMUSG00000060765	Olfr325	MOR275-5	olfactory receptor 325	protein-coding	0.892216957943121	0.352295592405732	0.345388914361992	0.340055966805881	0.716026723914738	0.353851693351266	0.924151224902018	0.879929580457828	1.36399587734662	0.466977026609475	1
Merged-chr19-46602852-2	chr19	46602761	46602961	+	885.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146099, intron 1 of 3)	intron (NM_146099, intron 1 of 3)	3755.0	NM_146099	226178.0	Mm.329895	NM_146099	ENSMUSG00000047731	Wbp1l	D19Wsu162e|Opal1	WW domain binding protein 1 like	protein-coding	1.17202376280605	1.46665419309644	0.659652994345188	0.995249477975798	1.07385822496056	0.673683562254484	0.662195152806764	1.54727553437468	-0.226401828078076	0.881993354178287	0.998431161219273
Merged-chr12-108903203-2	chr12	108903103	108903303	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177602, intron 2 of 6)	intron (NM_177602, intron 2 of 6)	8931.0	NM_177602	212198.0	Mm.342082	NM_177602	ENSMUSG00000040877	Wdr25	B930090D16Rik	WD repeat domain 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70604683-2	chr11	70604583	70604783	+	773.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016713, intron 11 of 30)	intron (NM_016713, intron 11 of 30)	-11211.0	NM_001145537	668433.0	Mm.425687	NM_001145537	ENSMUSG00000087279	4930544D05Rik	-	RIKEN cDNA 4930544D05 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-116620571-4	chr7	116620470	116620670	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	116201.0	NM_001360375	53322.0	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70506586-4	chr8	70506503	70506703	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_151646)	promoter-TSS (NR_151646)	149.0	NM_001357209	66462.0	Mm.28242	NM_025577	ENSMUSG00000058833	Rex1bd	2810428I15Rik	required for excision 1-B domain containing	protein-coding	4.23507490980068	4.2574604241317	4.36274347745819	4.98895353145123	4.76999335909243	3.32940327835153	4.65055391746966	5.21452638383088	0.194625978155396	0.662034298920833	0.991056031673253
Merged-chr15-101276809-2	chr15	101276709	101276909	+	770.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7492.0	NM_026566	68118.0	Mm.482360	NM_026566	ENSMUSG00000037204	Atg101	9430023L20Rik|AA407441|AU022967	autophagy related 101	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-6358703-2	chr7	6358603	6358803	+	683.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-4605.0	NM_001025163	330463.0	Mm.136456	NM_177888	ENSMUSG00000055150	Zfp78	A330079D15|KRAB12|Zfp77	zinc finger protein 78	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-31432031-3	chr3	31431935	31432135	+	715.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-121716.0	NM_172861	241919.0	Mm.285366	NM_172861	ENSMUSG00000069072	Slc7a14	A930013N06|BC061928	solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-3676610-3	chr11	3676524	3676724	+	912.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198162, intron 8 of 25)	intron (NM_198162, intron 8 of 25)	17924.0	NM_198162	74522.0	Mm.139127	NM_198162	ENSMUSG00000034543	Morc2a	8430403M08Rik|Zcwcc1	microrchidia 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-22429121-1	chr16	22429021	22429221	+	542.0	f1_c57bl6.idr	intron (NM_001358428, intron 5 of 12)	intron (NM_001358428, intron 5 of 12)	9247.0	NM_001358428	104156.0	Mm.155708	NM_023794	ENSMUSG00000013089	Etv5	1110005E01Rik|8430401F14Rik|ERM	ets variant 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-21925500-4	chr16	21925392	21925592	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172821, intron 11 of 12)	intron (NM_172821, intron 11 of 12)	22060.0	NM_025693	66664.0	Mm.46480	NM_025693	ENSMUSG00000022856	Tmem41a	2900010K02Rik|5730578N08Rik	transmembrane protein 41a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59649965-4	chr15	59649898	59650098	+	980.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144549, intron 1 of 2)	intron (NM_144549, intron 1 of 2)	1344.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-101976015-8	chr12	101975946	101976146	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016856)	promoter-TSS (NM_016856)	72.0	NM_016856	51786.0	Mm.716	NM_016856	ENSMUSG00000041781	Cpsf2	100kDa|2610024B04Rik|AI662483|Cpsf|MCPSF|mKIAA1367	cleavage and polyadenylation specific factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-59235795-1	chr10	59235695	59235895	+	746.0	f0_c57.idr	Intergenic	Intergenic	13873.0	NM_172939	268301.0	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-119053300-2	chr10	119053200	119053400	+	790.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2801.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-63007651-4	chr13	63007575	63007775	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289926, intron 1 of 15)	L1_Mus3|LINE|L1	42782.0	NM_001289924	72061.0	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-90244580-4	chr9	90244484	90244684	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 2 of 12)	intron (NM_194334, intron 2 of 12)	26185.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-87170649-2	chr9	87170549	87170749	+	918.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001101482, intron 2 of 3)	intron (NM_001101482, intron 2 of 3)	21421.0	NM_001359955	244958.0	Mm.335337	NM_001101482	ENSMUSG00000042761	Mrap2	BB633055	melanocortin 2 receptor accessory protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-39519657-7	chr18	39519385	39519585	+	921.714294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32240.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70538180-4	chr8	70538079	70538279	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1496.0	NM_007924	13716.0	Mm.271973	NM_007924	ENSMUSG00000070002	Ell	Ell1|Men	elongation factor RNA polymerase II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-60879534-2	chr2	60879434	60879634	+	751.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	1904.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-14943814-2	chr17	14943714	14943914	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175173)	promoter-TSS (NM_175173)	630.0	NM_026451	67912.0	Mm.390949	NM_026451	ENSMUSG00000050088	1600012H06Rik	-	RIKEN cDNA 1600012H06 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100295583-4	chr11	100295541	100295741	+	826.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-24308.0	NM_011508	20918.0	Mm.13886	NM_011508	ENSMUSG00000035530	Eif1	Sui1-rs1	eukaryotic translation initiation factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5750993-2	chr19	5750894	5751094	+	700.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_008520, exon 13 of 28)	exon (NM_008520, exon 13 of 28)	10090.0	NM_008520	16998.0	Mm.182396	NM_008520	ENSMUSG00000024940	Ltbp3	Ltbp2|mFLJ00070	latent transforming growth factor beta binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101984441-4	chr15	101984336	101984536	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19906.0	NM_031170	16691.0	Mm.358618	NM_031170	ENSMUSG00000049382	Krt8	AA960620|AL022697|AU019895|Card2|EndoA|K8|Krt-2.8|Krt2-8	keratin 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-122572665-4	chr2	122572569	122572769	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38608.0	NM_025961	67092.0	Mm.29975	NM_025961	ENSMUSG00000027199	Gatm	1810003P21Rik|AI314789|AT	glycine amidinotransferase (L-arginine:glycine amidinotransferase)	protein-coding	6.53599303753544	7.36324973739176	6.65128003449442	6.53661860475786	6.82056989526131	6.97957567577304	7.15247125298473	6.72620200376035	0.124345041351615	0.560781422641663	0.960350977191929
Merged-chr9-48985158-4	chr9	48985052	48985252	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175482)	promoter-TSS (NM_175482)	-233.0	NM_001359739	235323.0	Mm.21630	NM_175482	ENSMUSG00000032267	Usp28	9830148O20Rik|AU022237|mKIAA1515	ubiquitin specific peptidase 28	protein-coding	5.97031272109465	6.28035776586953	5.78463174932432	6.63811211572062	6.26008452889796	6.31688268544527	6.67744153309224	6.29410101587108	0.206048401920202	0.383458290608183	0.874442328443421
Merged-chr3-51559807-4	chr3	51559753	51559953	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033624)	promoter-TSS (NR_033624)	96.0	NR_033624	100039684.0	Mm.387178	NR_033624		5031434O11Rik	AI481280|Gm2370	RIKEN cDNA 5031434O11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-88892568-4	chr18	88892458	88892658	+	910.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018821, intron 1 of 2)	intron (NM_018821, intron 1 of 2)	1649.0	NM_018821	54607.0	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-94616687-2	chr16	94616587	94616787	+	843.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113389, intron 2 of 11)	intron (NM_001113389, intron 2 of 11)	5268.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-73460402-2	chr2	73460302	73460502	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	-6513.0	NM_001289722	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-51468746-5	chr6	51468653	51468853	+	977.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016806, intron 1 of 10)	intron (NM_016806, intron 1 of 10)	1141.0	NR_104468	53379.0	Mm.155896	NM_016806	ENSMUSG00000004980	Hnrnpa2b1	9130414A06Rik|Hnrpa2|Hnrpa2b1|hnrnp-A	heterogeneous nuclear ribonucleoprotein A2/B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-62854741-4	chr5	62854653	62854853	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170705, intron 7 of 8)	intron (NM_001170705, intron 7 of 8)	40930.0	NM_001170705	100322896.0	Mm.479821	NM_001170705	ENSMUSG00000090326	Dthd1	Gm17384	death domain containing 1	protein-coding	0.0845522805511872	0.101406266929671	0.541356683117614	0.0916158421078097	0.0856022707945555	0.712348695269798	0.422497771389633	0.393723677229223	1.51875431253615	0.462249445671461	1
Merged-chr16-24953514-1	chr16	24953414	24953614	+	553.0	f0_c57.idr	intron (NM_178665, intron 10 of 12)	intron (NM_178665, intron 10 of 12)	-106125.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-50929262-2	chr14	50929161	50929361	+	594.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001310505, exon 4 of 7)	exon (NM_001310505, exon 4 of 7)	1588.0	NM_001310506	219024.0	Mm.239117	NM_001033271	ENSMUSG00000035953	Tmem55b	BC039161|Pip4p1	transmembrane protein 55b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-99211870-3	chr6	99211775	99211975	+	708.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001197321, intron 2 of 17)	intron (NM_001197321, intron 2 of 17)	54640.0	NM_001197321	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-160195132-4	chr1	160195026	160195226	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025474)	promoter-TSS (NM_025474)	-89.0	NM_025474	64659.0	Mm.29599	NM_025474	ENSMUSG00000058267	Mrps14	1810032L21Rik|AL022847|Rpms14	mitochondrial ribosomal protein S14	protein-coding	7.45235070663173	7.11675206891778	7.04063474512891	7.24131265165908	6.68905486921066	7.52165305275969	7.2768120219074	7.3393943599788	0.00722689909484668	0.969644507587159	0.998431161219273
Merged-chr1-36267862-2	chr1	36267762	36267962	+	748.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_153408, intron 3 of 3)	RLTR17B_Mm|LTR|ERVK	5563.0	NM_153408	214854.0	Mm.389110	NM_153408	ENSMUSG00000047180	Neurl3	2010300P06Rik|Lincr	neuralized E3 ubiquitin protein ligase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33055846-1	chr16	33055746	33055946	+	818.0	f1_c57bl6.idr	promoter-TSS (NM_021338)	promoter-TSS (NM_021338)	340.0	NM_178378	69707.0	Mm.227918	NM_178378	ENSMUSG00000035578	Iqcg	2400003L07Rik|G1-374-12|esgd12d|repro1|stubby12d	IQ motif containing G	protein-coding	-1.32440223303897	-1.29339468673833	-0.717877708899544	-1.31276353204239	-1.32392690786997	-1.29109028300231	-1.30162128075409	-1.31119997543009	-2.49510383040271	0.470258445164311	1
Merged-chr5-145167660-1	chr5	145167560	145167760	+	726.5	f0_balb.idr	promoter-TSS (NM_133735)	promoter-TSS (NM_133735)	447.0	NM_001291248	54188.0	Mm.196884	NM_178576	ENSMUSG00000029625	Cpsf4	30kDa|C79664	cleavage and polyadenylation specific factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-41185545-4	chr9	41185456	41185656	+	878.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20599.0	NR_040392	78500.0	Mm.275715	NR_040392	ENSMUSG00000100837	1700063D05Rik	-	RIKEN cDNA 1700063D05 gene	ncRNA	4.65096353326676	4.80023847062294	5.64745263832601	5.17221872700718	2.94720992618809	3.37457230401312	2.61548953018243	4.31340963869885	-2.11163068996157	1.14829903253313e-05	0.000520552586612058
Merged-chr4-133872669-4	chr4	133872576	133872776	+	976.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009097, intron 2 of 21)	intron (NM_009097, intron 2 of 21)	2055.0	NM_001285506	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	4.47321310078238	3.9115652589687	3.06977687476708	4.4969927501965	3.89824417860621	3.21414898862439	3.72876900882302	4.86833731945495	-0.0376344719422594	0.944263144846752	0.998431161219273
Merged-chr8-68996467-3	chr8	68996365	68996565	+	723.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-92271.0	NM_007509	11966.0	Mm.249096	NM_007509	ENSMUSG00000006273	Atp6v1b2	AI194269|AI790362|Atp6b2|HO57|R74844	ATPase, H+ transporting, lysosomal V1 subunit B2	protein-coding	0.122838930549844	-0.0108051426423522	0.866020953489171	-0.021572066227903	-0.0282407968460334	-0.0094408912317229	0.471131580978153	0.155809838765036	-0.957600602064154	0.64814421237744	1
Merged-chr11-118228609-2	chr11	118228509	118228709	+	737.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	RSINE1|SINE|B4	-15867.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-27227239-2	chr7	27227139	27227339	+	868.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_181593, intron 1 of 6)	intron (NM_181593, intron 1 of 6)	1358.0	NM_181593	233011.0	Mm.30963	NM_181593	ENSMUSG00000003752	Itpkc	9130023N17Rik	inositol 1,4,5-trisphosphate 3-kinase C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-54807211-2	chr3	54807111	54807311	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_133231, exon 1 of 3)	exon (NM_133231, exon 1 of 3)	580.0	NM_133231	170767.0	Mm.185735	NM_133231	ENSMUSG00000036615	Rfxap	5730495K23Rik	regulatory factor X-associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-24353269-2	chr2	24353169	24353369	+	670.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7898.0	NM_001039701	16181.0	Mm.882	NM_031167	ENSMUSG00000026981	Il1rn	F630041P17Rik|IL-1ra	interleukin 1 receptor antagonist	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-43494276-2	chr19	43494176	43494376	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_031396, intron 10 of 10)	RSINE1|SINE|B4	30329.0	NM_010324	14718.0	Mm.19039	NM_010324	ENSMUSG00000025190	Got1	AI789014|Got-1|cAspAT|cCAT	glutamic-oxaloacetic transaminase 1, soluble	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-48835971-3	chr9	48835908	48836108	+	717.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033324)	promoter-TSS (NM_001033324)	-63.0	NM_001033324	235320.0	Mm.457803	NM_001033324	ENSMUSG00000066687	Zbtb16	AI467657|PLZF|Zfp145|lu	zinc finger and BTB domain containing 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43029212-2	chr4	43029112	43029312	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023231, intron 8 of 9)	intron (NM_023231, intron 8 of 9)	2172.0	NM_023231	66592.0	Mm.331565	NM_023231	ENSMUSG00000028455	Stoml2	0610038F01Rik|MSLP2|SLP-2	stomatin (Epb7.2)-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52633062-3	chr13	52633021	52633221	+	782.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011518, intron 9 of 13)	intron (NM_011518, intron 9 of 13)	36239.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-126631729-2	chr3	126631625	126631825	+	963.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025438, intron 2 of 18)	intron (NM_001025438, intron 2 of 18)	34774.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	0.988736677963777	2.02654856897107	1.0448237580496	1.89098592816806	2.45185501757472	1.07606716721964	1.8362009475677	2.37707279802687	1.24382177216334	0.307959349704594	0.808952350279644
Merged-chr15-25624484-4	chr15	25624390	25624590	+	870.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019472, intron 1 of 40)	intron (NM_019472, intron 1 of 40)	1940.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-73617275-4	chr7	73617195	73617395	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58900.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-55589651-2	chr16	55589551	55589751	+	562.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16A2|LTR|ERVL	94920.0	NR_039578	100628589.0		NR_039578	ENSMUSG00000093292	Mir5118	mmu-mir-5118|mu-mir-5118	microRNA 5118	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-100537781-2	chr12	100537681	100537881	+	769.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16959.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28697534-4	chr17	28697426	28697626	+	973.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168514, intron 2 of 12)	intron (NM_001168514, intron 2 of 12)	4958.0	NM_001357724	26416.0	Mm.311337	NM_011951	ENSMUSG00000053436	Mapk14	CSBP2|Crk1|Csbp1|Mxi2|PRKM14|PRKM15|p38|p38-alpha|p38MAPK|p38a|p38alpha	mitogen-activated protein kinase 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-37231446-2	chr10	37231346	37231546	+	681.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-92520.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-93818919-4	chr16	93818834	93819034	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR49|LTR|ERVK	-13187.0	NM_001045529	338467.0	Mm.287329	NM_001045529	ENSMUSG00000039456	Morc3	1110051N18Rik|AI452146|BF318192|D16Jhu32e|NXP2|Zcwcc3	microrchidia 3	protein-coding	2.32622076673555	3.07389697907701	2.72285247922637	2.55265013103912	2.235109111291	2.35846035834754	2.13015213310162	2.21505410697576	-1.01964057915507	0.188503689588839	0.666896186658215
Merged-chr10-80579169-2	chr10	80579069	80579269	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1873.0	NM_078477	118445.0	Mm.41513	NM_078477	ENSMUSG00000035397	Klf16	AI843742|BTEB4|DRRF	Kruppel-like factor 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45342879-2	chr7	45342779	45342979	+	906.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_029741, intron 23 of 29)	intron (NM_029741, intron 23 of 29)	7610.0	NM_010473	15464.0	Mm.39968	NM_010473	ENSMUSG00000038239	Hrc	-	histidine rich calcium binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70431773-2	chr11	70431673	70431873	+	736.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271360)	promoter-TSS (NM_001271360)	-807.0	NM_001271360	216869.0	Mm.203747	NM_145429	ENSMUSG00000060216	Arrb2	AI326910|AW122872|Arr3	arrestin, beta 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-95332076-7	chr8	95331954	95332154	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024467)	promoter-TSS (NM_024467)	-104.0	NM_024467	79233.0	Mm.350514	NM_024467	ENSMUSG00000046556	Zfp319	AI225750|AI413472|Znf319|mKIAA1388	zinc finger protein 319	protein-coding	4.03125595603662	4.89174779655568	5.16750756370281	3.9310613234733	4.66634135448623	3.97937990688164	4.59947502574502	4.42054779018891	-0.196581635483409	0.645066484533763	0.983701068654072
Merged-chr5-49350847-1	chr5	49350747	49350947	+	562.0	f1_c57bl6.idr	Intergenic	Intergenic	-65188.0	NM_001199244	80334.0	Mm.160172	NM_030265	ENSMUSG00000029088	Kcnip4	AV032399|Calp|Calp250|KChIP4|KChIP4a	Kv channel interacting protein 4	protein-coding	-0.963251846577999	-0.946452062054403	-0.957163736869046	-0.314607539784013	-0.96268688430864	-0.943768998049155	-0.76980775413011	-0.959053125297305	-1.95881997970894	0.526669098320751	1
Merged-chr19-55232388-4	chr19	55232279	55232479	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081076, intron 4 of 20)	intron (NM_001081076, intron 4 of 20)	8857.0	NM_001081076	73707.0	Mm.489987	NM_001081076	ENSMUSG00000055523	Gucy2g	2410077I05Rik|GC-G	guanylate cyclase 2g	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129408660-4	chr2	129408545	129408745	+	827.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37506.0	NM_008361	16176.0	Mm.222830	NM_008361	ENSMUSG00000027398	Il1b	IL-1beta|Il-1b	interleukin 1 beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-172439497-2	chr2	172439397	172439597	+	965.8333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1081.0	NM_025542	66404.0	Mm.25157	NM_025542	ENSMUSG00000027502	Rtf2	1700067C04Rik|2410001C21Rik|5730427M17Rik|AA589417|Rtfdc1	replication termination factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-185331522-3	chr1	185331435	185331635	+	758.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011794)	promoter-TSS (NM_011794)	-624.0	NM_011794	23827.0	Mm.227549	NM_011794	ENSMUSG00000026617	Bpnt1	BPntase	bisphosphate 3'-nucleotidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-17575276-1	chr10	17575176	17575376	+	558.5	f1_c57bl6.idr	Intergenic	Intergenic	-147952.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-121227006-4	chr6	121226903	121227103	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_017379)	TTS (NM_017379)	16269.0	NM_017379	53857.0	Mm.32884	NM_017379	ENSMUSG00000030137	Tuba8	-	tubulin, alpha 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-119568874-3	chr9	119568779	119568979	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021544, intron 1 of 27)	intron (NM_021544, intron 1 of 27)	-6201.0	NM_001253860	20271.0	Mm.103584	NM_021544	ENSMUSG00000032511	Scn5a	Nav1.5|Nav1.5c|SkM1|SkM2|mH1	sodium channel, voltage-gated, type V, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-99109343-4	chr9	99109247	99109447	+	794.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029094, intron 2 of 23)	intron (NM_029094, intron 2 of 23)	30864.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-130647487-2	chr7	130647387	130647587	+	802.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001004468, intron 3 of 21)	intron (NM_001004468, intron 3 of 21)	-45069.0	NM_001347637	57752.0	Mm.86322	NM_021314	ENSMUSG00000030852	Tacc2	mKIAA4180	transforming, acidic coiled-coil containing protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-35133829-4	chr6	35133733	35133933	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164411)	promoter-TSS (NM_001164411)	-96.0	NM_001164414	53621.0	Mm.214525	NM_016877	ENSMUSG00000038784	Cnot4	Not4|Not4h|Not4hp	CCR4-NOT transcription complex, subunit 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-64962535-4	chr18	64962381	64962581	+	950.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114386, intron 1 of 30)	intron (NM_001114386, intron 1 of 30)	-61046.0	NM_031881	83814.0	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	4.20031462793656	4.40182692497417	4.76224266355677	5.17722626281594	4.07872579629395	4.15773960284771	4.51677064949792	5.02327500307656	-0.235667839314112	0.564052497207024	0.960367595640396
Merged-chr11-59506323-4	chr11	59506227	59506427	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_135273, exon 1 of 4)	non-coding (NR_135273, exon 1 of 4)	313.0	NM_001291014	268417.0	Mm.239793	NM_172941	ENSMUSG00000020472	Zkscan17	Nizp1|Zfp496|Znf496	zinc finger with KRAB and SCAN domains 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-23983592-4	chr17	23983481	23983681	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8351.0	NM_013921	30943.0	Mm.142568	NM_013921	ENSMUSG00000024124	Prss30	2010015P21Rik|Disp|Disp1|Tmprss8	protease, serine 30	protein-coding	5.65589069295844	4.33912507477199	5.06949663355373	4.97837788852424	5.06356984779639	4.68037335115623	5.17401645956618	4.45124446918954	-0.271076487597874	0.460856233511599	0.920953234475195
Merged-chr18-55548005-2	chr18	55547905	55548105	+	588.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-555414.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	-1.50516312850466	-1.47383092096757	-1.48330603914065	-1.19291545288017	-1.3546714919122	-1.47177762333306	-1.48116108007494	-1.48969600423451	-0.709809768853011	0.840354194586821	1
Merged-chr19-10284747-1	chr19	10284647	10284847	+	617.0	f0_balb.idr	intron (NM_198114, intron 1 of 19)	intron (NM_198114, intron 1 of 19)	20130.0	NM_198114	269060.0	Mm.329718	NM_198114	ENSMUSG00000035735	Dagla	Nsddr	diacylglycerol lipase, alpha	protein-coding	-0.413270832553205	0.248879758316469	-0.403519686790488	-0.4071766335812	-0.41236239857827	0.260274020124072	-0.402476173372258	-0.406537021983025	0.0394809277679939	0.98817139586833	1
Merged-chr7-44985039-2	chr7	44984939	44985139	+	718.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_045521, intron 1 of 11)	intron (NR_045521, intron 1 of 11)	1381.0	NM_001252476	15469.0	Mm.27545	NM_019830	ENSMUSG00000109324	Prmt1	6720434D09Rik|AW214366|Hrmt1l2|Mrmt1	protein arginine N-methyltransferase 1	protein-coding	-1.84362945061595	-1.81329140012928	-1.67810947190254	-1.83000206547234	-1.84149977556685	-1.81130325271815	-1.67603257143677	-1.82865309133977	0.037684011990387	0.991491645451152	1
Merged-chr9-106386570-5	chr9	106386397	106386597	+	824.56665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17865.0	NM_153459	235584.0	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-47358950-2	chr6	47358850	47359050	+	638.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-94782.0	NM_001355551	26965.0	Mm.87611	NM_012042	ENSMUSG00000029686	Cul1	Cul-1	cullin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-119127440-4	chr4	119127352	119127552	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011400, intron 2 of 9)	intron (NM_011400, intron 2 of 9)	18707.0	NM_011400	20525.0	Mm.21002	NM_011400	ENSMUSG00000028645	Slc2a1	Glut-1|Glut1	solute carrier family 2 (facilitated glucose transporter), member 1	protein-coding	4.18833241815799	5.32373239656596	4.70704386798414	4.24577929894628	4.48558073233769	4.92876984920213	3.92870197096674	4.02262493894699	-0.365025851059149	0.394215000726566	0.882643365025628
Merged-chr17-42857706-4	chr17	42857644	42857844	+	838.9833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009847, intron 1 of 17)	intron (NM_009847, intron 1 of 17)	18680.0	NM_009847	12488.0	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding	2.78660087200438	2.1419337322073	2.36079598709677	2.78588787349737	2.8094030826045	2.70100400887626	2.0872146100074	1.40094350409901	-0.376561562684301	0.666666434724958	0.992515300319318
Merged-chr9-25309906-2	chr9	25309806	25310006	+	959.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57014.0	NM_001359738	235072.0	Mm.270259	NM_009859	ENSMUSG00000001833	Sept7	Cdc10|E430034N22	septin 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-64111537-3	chr15	64111441	64111641	+	695.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010026, intron 25 of 30)	Lx8b|LINE|L1	-51093.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-94492830-2	chr16	94492730	94492930	+	708.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33799.0	NM_007834	13185.0	Mm.7472	NM_007834	ENSMUSG00000022898	Dscr3	AW538125|Dcra	DSCR3 arrestin fold containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-106847754-2	chr13	106847658	106847858	+	661.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360897, intron 26 of 30)	B4|SINE|B4	89200.0	NM_001360897	76582.0	Mm.132208	NM_029665	ENSMUSG00000042590	Ipo11	1700081H05Rik|2510001A17Rik|AI314624|AW555235|E330021B14Rik|Ranbp11	importin 11	protein-coding	-1.84354474832578	-1.81325489144778	-1.53416061964661	-1.82993901100912	-1.8414184563789	-1.81126990231468	-1.82034119297928	-1.82859217979378	-1.52252619601533	0.665276690233728	1
Merged-chr17-43033263-2	chr17	43033163	43033363	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178589, intron 1 of 5)	intron (NM_178589, intron 1 of 5)	16708.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	-2.18308165884198	-2.15547475440471	-2.16382331017202	-2.1706810624505	-2.18114370519566	-2.15366558754311	-2.03057248461154	-2.16945352807143	0.759018020146679	0.829933115115583	1
Merged-chr9-62829331-2	chr9	62829231	62829431	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-9456.0	NM_001033175	76524.0	Mm.283636	NM_001033175	ENSMUSG00000032245	Cln6	1810065L06Rik|AW743417|D9Bwg1455e|nclf	ceroid-lipofuscinosis, neuronal 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-67374097-4	chr3	67374003	67374203	+	886.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039543)	promoter-TSS (NM_001039543)	6.0	NM_010801	17349.0	Mm.10414	NM_010801	ENSMUSG00000048416	Mlf1	HLS7	myeloid leukemia factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-39643713-3	chr8	39643617	39643817	+	765.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	-1039.0	NM_001113326	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	2.42440462335474	1.7600341271078	2.25907624829666	3.04789692623168	2.44476756333815	1.77188455754485	2.84676106345964	3.06322883400909	0.321713868888046	0.702656241335758	0.998431161219273
Merged-chr6-137412176-4	chr6	137412030	137412230	+	832.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011216, intron 13 of 26)	intron (NM_011216, intron 13 of 26)	1409.0	NM_001164403	19277.0	Mm.186361	NM_011216	ENSMUSG00000030223	Ptpro	D28|GLEPP1|PTPBK|PTPROt|PTPU2|PTPoc|PTPphi|Ptpn15|R-PTP-O	protein tyrosine phosphatase, receptor type, O	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129855873-1	chr4	129855773	129855973	+	740.0	f1_c57bl6.idr	Intergenic	Intergenic	35165.0	NM_001164745	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	1.30285750683325	2.22893501810915	0.84874473553634	1.51164469488916	1.73639656158997	0.870460593464766	1.27549964574768	1.05499489933488	-0.975191131811512	0.454504231548268	0.919120493489568
Merged-chr1-184615522-4	chr1	184615425	184615625	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57834.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128270409-4	chr10	128270288	128270488	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019963)	promoter-TSS (NM_019963)	-110.0	NM_019963	20847.0	Mm.293120	NM_019963	ENSMUSG00000040033	Stat2	1600010G07Rik|AW496480	signal transducer and activator of transcription 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70531411-2	chr8	70531311	70531511	+	556.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010223, intron 4 of 8)	MIRc|SINE|MIR	3565.0	NM_001199631	14232.0	Mm.141864	NM_010223	ENSMUSG00000019428	Fkbp8	38kDa|FKBP-38|FKBP-8|FKBPR38|Fkbp38|mFKBP38	FK506 binding protein 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-14827360-2	chr4	14827260	14827460	+	667.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_152812)	promoter-TSS (NM_152812)	-773.0	NM_152812	72201.0	Mm.387724	NM_152812	ENSMUSG00000040550	Otud6b	2600013N14Rik|AU015433	OTU domain containing 6B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-67776083-3	chr18	67775973	67776173	+	686.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_045376)	TTS (NR_045376)	1197.0	NM_028112	72124.0	Mm.307315	NM_028112	ENSMUSG00000079614	Seh1l	2610007A16Rik|AW540070|SEC13L|SEH1A|SEH1B|Seh1	SEH1-like (S. cerevisiae	protein-coding	0.601537150716522	0.118389123503315	0.111564375073948	0.106271731732832	0.0987498611935229	0.891255456735694	0.725512151939394	0.10719810412316	1.64141070654312	0.443386442576554	1
Merged-chr10-100629936-3	chr10	100629847	100630047	+	581.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37561.0	NM_001081246	66605.0	Mm.72646	NM_001081246	ENSMUSG00000056912	1700017N19Rik	-	RIKEN cDNA 1700017N19 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-44971054-2	chr4	44970954	44971154	+	737.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10340.0	NM_080289	76238.0	Mm.196574	NM_080289	ENSMUSG00000035637	Grhpr	1110059D05Rik|6430629L09Rik|Glxr	glyoxylate reductase/hydroxypyruvate reductase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84656947-4	chr8	84656851	84657051	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	5901.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-50806295-1	chr14	50806195	50806395	+	560.0	f1_c57bl6.idr	Intergenic	Intergenic	1476.0	NR_002142	85029.0		NR_002142	ENSMUSG00000092837	Rpph1	Gm24821|H1RNA|Rmrp5|Rpr	ribonuclease P RNA component H1	ncRNA	0.429250668481759	0.0808243918170106	0.0754332385901205	0.590081964331325	0.207488679131622	0.0820406540835152	0.076621679378378	0.691982895446397	-0.130840633858525	0.949607190581883	1
Merged-chr16-8827403-2	chr16	8827303	8827503	+	702.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-2697.0	NM_001081400	69053.0	Mm.390868	NM_001081400	ENSMUSG00000022507	1810013L24Rik	1110017P05Rik|3010002C02Rik|AA792997|AW124177|Gm19906|R74903	RIKEN cDNA 1810013L24 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81481201-4	chr15	81481073	81481273	+	996.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14857.0	NM_019712	56438.0	Mm.29405	NM_019712	ENSMUSG00000022400	Rbx1	1500002P15Rik|AA517855|ROC1	ring-box 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-6493437-2	chr18	6493335	6493535	+	708.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007935, intron 1 of 13)	intron (NM_007935, intron 1 of 13)	-2578.0	NM_001276350	13831.0	Mm.312133	NM_007935	ENSMUSG00000024240	Epc1	2400007E14Rik|5730566F07Rik|A930032N02Rik|mir-1893	enhancer of polycomb homolog 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-72818777-4	chr5	72818708	72818908	+	936.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013689, intron 3 of 17)	MIRb|SINE|MIR	49640.0	NM_001113461	21682.0	Mm.319581	NM_013689	ENSMUSG00000029217	Tec	-	tec protein tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-10948270-2	chr8	10948170	10948370	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19813.0	NR_135302	665306.0	Mm.358758	NR_030715	ENSMUSG00000038917	3930402G23Rik	-	RIKEN cDNA 3930402G23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83786885-2	chr6	83786785	83786985	+	776.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7385.0	NR_136916	665004.0		NR_136916		Gm7443	EG665004	ribosomal protein L27 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-152783944-4	chr3	152783841	152784041	+	871.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025662, intron 10 of 10)	intron (NM_025662, intron 10 of 10)	69841.0	NM_025662	329777.0	Mm.331447	NM_025662	ENSMUSG00000039047	Pigk	3000001O05Rik|Gm38470|PIG-K	phosphatidylinositol glycan anchor biosynthesis, class K	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-63117207-4	chr14	63117114	63117314	+	914.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5248.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-25940555-4	chr15	25940448	25940648	+	998.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025459)	promoter-TSS (NM_025459)	-154.0	NM_001277315	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-31219134-4	chr6	31219064	31219264	+	967.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_110471)	promoter-TSS (NR_110471)	-690.0	NR_110470	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-123065666-3	chr3	123065574	123065774	+	917.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30687.0	NM_001355462	59006.0	Mm.141157	NM_021503	ENSMUSG00000028116	Myoz2	1110012I24Rik|Fatz-2|Myozl2	myozenin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-49712059-4	chr11	49711987	49712187	+	909.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_212484, intron 1 of 11)	CpG	635.0	NM_212484	104625.0	Mm.247113	NM_212484	ENSMUSG00000020362	Cnot6	CCR4	CCR4-NOT transcription complex, subunit 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132768195-4	chr4	132768106	132768306	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011284)	promoter-TSS (NM_011284)	-154.0	NM_011284	19891.0	Mm.2870	NM_011284	ENSMUSG00000028884	Rpa2	AA409079|AI325195|AU020965|RPA34|Rf-A2	replication protein A2	protein-coding	5.96526227888001	4.99825227700984	5.57764133502897	5.8610158157914	6.13537147889505	5.07875064018007	6.07290670650774	5.7814756050579	0.196121623101495	0.515559115898854	0.947402641287243
Merged-chr6-136658734-5	chr6	136658596	136658796	+	909.7333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025806, intron 1 of 10)	RSINE1|SINE|B4	3197.0	NM_025806	66857.0	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	4.07308813874972	4.19630227516766	3.78301824344934	3.42191586349827	4.6950809279679	4.45741863433118	4.09205422969452	2.9979487769895	0.411855802043321	0.415662583859976	0.896676881011847
Merged-chr11-86757793-7	chr11	86757671	86757871	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356393)	promoter-TSS (NM_001356393)	-204.0	NM_001356393	67300.0	Mm.254588	NM_001003908	ENSMUSG00000047126	Cltc	3110065L21Rik|CHC|R74732	clathrin, heavy polypeptide (Hc)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-32343880-1	chr4	32343780	32343980	+	687.0	f0_balb.idr	Intergenic	Intergenic	-73555.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-72274892-4	chr9	72274789	72274989	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311105)	promoter-TSS (NM_001311105)	1.0	NM_001311105	235469.0	Mm.242791	NM_146224	ENSMUSG00000038535	Zfp280d	A930005F02Rik|BC027163|Suhw4|ZNF634|Znf280d	zinc finger protein 280D	protein-coding	5.26006614997888	5.2157279858087	5.5746085831967	5.03943015877249	5.11760628823206	4.91343520683539	4.85378903225249	4.80100136871428	-0.418880851212094	0.170259845725811	0.637742678676777
Merged-chr14-21747432-2	chr14	21747332	21747532	+	602.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001007268, exon 2 of 8)	exon (NM_001007268, exon 2 of 8)	1190.0	NM_001007268	27389.0	Mm.390674	NM_013849	ENSMUSG00000021768	Dusp13	DUSP13A|DUSP13B|Gm1203|LMW-DSP6|MDSP|TMDP|TS-DSP6	dual specificity phosphatase 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-38338175-4	chr6	38338063	38338263	+	982.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028864, intron 2 of 8)	intron (NM_028864, intron 2 of 8)	16440.0	NM_001347122	78781.0	Mm.25243	NM_028421	ENSMUSG00000029826	Zc3hav1	1200014N16Rik|2900058M19Rik|9130009D18Rik|9830115L13Rik|ARTD13|D6Bwg1452e|ZAP	zinc finger CCCH type, antiviral 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91508610-4	chr2	91508508	91508708	+	986.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172668, exon 37 of 38)	exon (NM_172668, exon 37 of 38)	-18154.0	NM_001165989	75786.0	Mm.168478	NM_029437	ENSMUSG00000040549	Ckap5	3110043H24Rik|4930432B04Rik|D730027C18Rik|T25636|mKIAA0097	cytoskeleton associated protein 5	protein-coding	2.51810541895995	2.58797789393093	4.2250458115297	1.66468827422357	2.54128135191404	3.1931550757032	2.51392663703751	2.10720613951415	-0.821173573790792	0.322817267224626	0.825191191965188
Merged-chr6-116460136-4	chr6	116460050	116460250	+	786.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009662, intron 1 of 13)	intron (NM_009662, intron 1 of 13)	1028.0	NM_009662	11689.0	Mm.41072	NM_009662	ENSMUSG00000025701	Alox5	5-LO|5-LOX|5LO|5LX|AI850497|F730011J02	arachidonate 5-lipoxygenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35201207-4	chr17	35201124	35201324	+	975.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013693, intron 1 of 3)	intron (NM_013693, intron 1 of 3)	783.0	NM_013693	21926.0	Mm.1293	NM_013693	ENSMUSG00000024401	Tnf	DIF|TNF-a|TNF-alpha|TNFSF2|TNFalpha|Tnfa|Tnfsf1a|Tnlg1f	tumor necrosis factor	protein-coding	0.145808658715202	0.776154500758803	0.335361757664485	0.153615020169436	0.798754099789623	0.362489407537678	0.159653650120832	0.321153044618191	0.350359897347546	0.854647749491281	1
Merged-chr1-172578274-1	chr1	172578174	172578374	+	916.0	f0_c57.idr	Intergenic	Intergenic	12294.0	NM_029084	74748.0	Mm.179812	NM_029084	ENSMUSG00000053318	Slamf8	5830408F06Rik|Blame|SBBI42	SLAM family member 8	protein-coding	2.59528617269297	2.30100565231606	1.9547514164854	2.80770622277132	1.06313270202861	1.16738909762849	2.34678789336176	1.10655880964941	-2.24455649358451	0.0446190074145483	0.303939544451032
Merged-chr7-110612282-2	chr7	110612182	110612382	+	558.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177324, intron 1 of 40)	B2_Mm2|SINE|B2	2638.0	NM_177324	319934.0	Mm.102970	NM_177324	ENSMUSG00000038371	Sbf2	4833411B01Rik|AA414977|AI317167|B430219L04Rik|Mtmr13|mMTMH1	SET binding factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135182050-4	chr4	135181973	135182173	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61428.0	NM_019732	12399.0	Mm.378894	NM_019732	ENSMUSG00000070691	Runx3	AML2|Cbfa3|Pebp2a3	runt related transcription factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-86731222-4	chr10	86731126	86731326	+	950.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_153595, exon 5 of 5)	exon (NM_153595, exon 5 of 5)	18461.0	NM_153595	103220.0	Mm.440762	NM_153595	ENSMUSG00000044937	Ttc41	AI449705|AU041509|Gnn	tetratricopeptide repeat domain 41	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-121660123-1	chr5	121660023	121660223	+	734.5	f0_balb.idr	promoter-TSS (NM_028227)	promoter-TSS (NM_028227)	387.0	NM_028037	71985.0	Mm.45423	NM_028037	ENSMUSG00000029456	Acad10	2410021P16Rik	acyl-Coenzyme A dehydrogenase family, member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81549841-2	chr10	81549741	81549941	+	807.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-4795.0	NM_010301	14672.0	Mm.260925	NM_010301	ENSMUSG00000034781	Gna11	Dsk7|E430025L19	guanine nucleotide binding protein, alpha 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-34072493-4	chr11	34072391	34072591	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010696, intron 7 of 20)	intron (NM_010696, intron 7 of 20)	25563.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	4.87249706906229	4.74547530106493	5.25828103094714	5.10074621605181	4.67103674411663	4.21682609074425	5.49234619329282	4.63774566539158	-0.204188059777674	0.575747049393531	0.965286201225318
Merged-chr6-87919972-2	chr6	87919872	87920072	+	808.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173737, intron 3 of 6)	MTD|LTR|ERVL-MaLR	5996.0	NM_173737	232210.0	Mm.246241	NM_173737	ENSMUSG00000030060	Hmces	8430410A17Rik|C85376	5-hydroxymethylcytosine (hmC) binding, ES cell specific	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10022554-6	chr19	10022439	10022639	+	823.4055179999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153790, intron 1 of 10)	intron (NR_153790, intron 1 of 10)	4345.0	NM_001347430	74760.0	Mm.281969	NM_144538	ENSMUSG00000024663	Rab3il1	1200014K04Rik|AI115013|C76746|Rab3ail1	RAB3A interacting protein (rabin3)-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-47398048-4	chr11	47397942	47398142	+	989.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18740.0	NM_011891	24052.0	Mm.338890	NM_011891	ENSMUSG00000020354	Sgcd	35kDa|delta-SG	sarcoglycan, delta (dystrophin-associated glycoprotein)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180766851-4	chr1	180766769	180766969	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40826.0	NM_133225	170760.0	Mm.272981	NM_133225	ENSMUSG00000026499	Acbd3	60kDa|8430407O11Rik|D1Ertd10e|GCP60|GOLPH1|Gocap1|Pap7	acyl-Coenzyme A binding domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-4429468-2	chr10	4429340	4429540	+	762.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_002891)	promoter-TSS (NR_002891)	-274.0	NR_002891	433224.0	Mm.153111	NR_002891	ENSMUSG00000112693	Gm5512	EG433224	required for meiotic nuclear division 1 pseudogene	pseudo	0.920022570194919	0.371469870313071	0.36418730126772	0.900413747135351	0.741173683799886	1.00368204053655	0.36579487106627	0.359541807626883	-0.116729029961132	0.949864980599408	1
Merged-chr1-13588112-2	chr1	13588012	13588212	+	815.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028173, intron 1 of 10)	intron (NM_028173, intron 1 of 10)	1798.0	NM_028173	72265.0	Mm.28765	NM_028173	ENSMUSG00000025935	Tram1	1810049E02Rik|TRAMP	translocating chain-associating membrane protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125120207-1	chr6	125120107	125120307	+	660.0	f0_balb.idr	exon (NM_145979, exon 26 of 39)	exon (NM_145979, exon 26 of 39)	-11676.0	NM_138747	110109.0	Mm.29203	NM_138747	ENSMUSG00000038279	Nop2	120kDa|A530002O17|Nol1	NOP2 nucleolar protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-85849274-4	chr11	85849169	85849369	+	802.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16654.0	NM_009324	21385.0	Mm.287052	NM_009324	ENSMUSG00000000093	Tbx2	-	T-box 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-101995653-2	chr13	101995553	101995753	+	616.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-227436.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-87735959-2	chr11	87735859	87736059	+	583.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_172448)	TTS (NM_172448)	-1592.0	NM_001355753	20922.0	Mm.622	NM_009296	ENSMUSG00000020485	Supt4a	AL022777|Supt4h|Supt4h1|Supt4h1a	suppressor of Ty 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-60771258-4	chr14	60771151	60771351	+	853.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183175, intron 1 of 3)	L1MB2|LINE|L1	3117.0	NM_183175	239126.0	Mm.319636	NM_183175	ENSMUSG00000071347	C1qtnf9	9130217G22Rik|CTRP9|Ciqtnf9	C1q and tumor necrosis factor related protein 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118103541-2	chr11	118103441	118103641	+	912.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001167746, intron 19 of 80)	intron (NM_001167746, intron 19 of 80)	25678.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-60625967-1	chr13	60625867	60626067	+	598.0	f0_balb.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	23756.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-172337063-2	chr1	172336975	172337175	+	833.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4135.0	NM_001039484	16513.0	Mm.254563	NM_020269	ENSMUSG00000044708	Kcnj10	BIR10|BIRK-1|Kir1.2|Kir4.1	potassium inwardly-rectifying channel, subfamily J, member 10	protein-coding	1.26736887933412	0.439223257122627	1.51637518064468	0.418187712969098	0.404853763364619	0.441848105202644	0.430059117178551	1.28826791894573	-1.25543977777721	0.49666794500193	0.936897994490085
Merged-chr10-37343075-3	chr10	37342955	37343155	+	558.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1K|LTR|ERVL-MaLR	-204129.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-24975957-4	chr2	24975853	24976053	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146251)	promoter-TSS (NM_146251)	-80.0	NM_146251	241274.0	Mm.389243	NM_146251	ENSMUSG00000036833	Pnpla7	BC027342|E430013P11Rik|Nre	patatin-like phospholipase domain containing 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132731732-2	chr4	132731633	132731833	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_201368, intron 1 of 2)	intron (NM_201368, intron 1 of 2)	813.0	NM_201368	381560.0	Mm.44558	NM_201368	ENSMUSG00000037752	Xkr8	4931440N07Rik|AI597014|Gm1031|XRG8|mXkr8	X-linked Kx blood group related 8	protein-coding	-0.459126894918705	-0.111288395596698	-0.451962353750888	0.0513559069018817	-0.201548620007079	-0.447651724986268	-0.451188301737377	-0.454192572319024	-1.71596004143581	0.512513259712943	1
Merged-chr13-3637051-4	chr13	3636946	3637146	+	965.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001267724, intron 1 of 3)	intron (NM_001267724, intron 1 of 3)	3014.0	NM_001267724	142688.0	Mm.253061	NM_178283	ENSMUSG00000033781	Asb13	2210015B19Rik|6430573K02Rik|Asb-13|C85285	ankyrin repeat and SOCS box-containing 13	protein-coding	3.00943535349925	2.72785349209595	3.02724961242197	2.8613656365148	2.55956123030725	1.89987686305911	2.7694902165946	2.57810647439315	-0.831673401488867	0.248403987870785	0.74758343357745
Merged-chr11-83942126-4	chr11	83942093	83942293	+	984.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_030096, exon 1 of 15)	exon (NM_030096, exon 1 of 15)	103.0	NM_030096	78394.0	Mm.280544	NM_030096	ENSMUSG00000020677	Ddx52	2700029C06Rik|ROK1	DEAD (Asp-Glu-Ala-Asp) box polypeptide 52	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-69241995-4	chr12	69241916	69242116	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178253, intron 1 of 12)	CpG	184.0	NM_178253	271005.0	Mm.180969	NM_178253	ENSMUSG00000051890	Klhdc1	-	kelch domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-13671834-4	chr8	13671724	13671924	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 1 of 23)	intron (NM_009025, intron 1 of 23)	5763.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139255844-2	chr5	139255744	139255944	+	859.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163316, intron 1 of 8)	intron (NM_001163316, intron 1 of 8)	2347.0	NM_001163316	67604.0	Mm.270137	NM_026269	ENSMUSG00000025858	Get4	1110007L15Rik|AW412535|Cee	golgi to ER traffic protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91196119-4	chr2	91196013	91196213	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177730)	promoter-TSS (NM_001177730)	-997.0	NM_001177730	22259.0	Mm.22690	NM_013839	ENSMUSG00000002108	Nr1h3	AU018371|LXR|RLD1|Unr1	nuclear receptor subfamily 1, group H, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-43846543-3	chr5	43846508	43846708	+	815.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	-22201.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	1.82628233902074	2.09892968409109	0.80782248043052	0.791379384383154	0.981271026909888	0.833017596687726	1.26766900392612	2.19433635561202	-0.20345164506488	0.884178037144035	0.998431161219273
Merged-chr13-108268020-4	chr13	108267915	108268115	+	999.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029001, intron 3 of 7)	intron (NM_029001, intron 3 of 7)	-48322.0	NM_178683	218581.0	Mm.32318	NM_178683	ENSMUSG00000021697	Depdc1b	9830132O03|AW260467|XTP1	DEP domain containing 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83914765-2	chr6	83914660	83914860	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_008717, intron 1 of 26)	CpG	407.0	NM_001355284	18139.0	Mm.132392	NM_008717	ENSMUSG00000030016	Zfp638	AI323587|Np220|Zfml|Znf638|mNP220	zinc finger protein 638	protein-coding	0.944001185320441	1.2462303043504	0.447348103241538	0.241325488429584	0.540343866559948	0.258178106254872	0.249742075936233	0.242474277009388	-2.89237895069806	0.13598550432445	1
Merged-chr5-36518524-3	chr5	36518425	36518625	+	608.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133910, intron 7 of 13)	intron (NM_133910, intron 7 of 13)	12098.0	NM_001113364	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-100087516-4	chr12	100087426	100087626	+	981.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24805.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-121342907-3	chr11	121342809	121343009	+	758.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025793, intron 2 of 9)	intron (NM_025793, intron 2 of 9)	11538.0	NM_025793	66840.0	Mm.103986	NM_025793	ENSMUSG00000025173	Wdr45b	0610008N23Rik|AA408735|D16Bwg0193e|WIPI-3|Wdr45l	WD repeat domain 45B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-102296213-6	chr11	102296098	102296298	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001098836, intron 1 of 12)	CpG	431.0	NM_001098836	217218.0	Mm.390381	NM_001098836	ENSMUSG00000059995	Atxn7l3	E030022H21Rik	ataxin 7-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-167343033-2	chr1	167342933	167343133	+	754.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-6958.0	NM_019993	56752.0	Mm.292539	NM_019993	ENSMUSG00000026687	Aldh9a1	AA139417|Abaldh|ESTM40|TMABA-DH|Tmabadh	aldehyde dehydrogenase 9, subfamily A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-13407900-2	chr2	13407800	13408000	+	579.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081084, intron 27 of 66)	intron (NM_001081084, intron 27 of 66)	83976.0	NM_001081084	65969.0	Mm.313915	NM_001081084	ENSMUSG00000026726	Cubn	AA408369|AL022750|D2Wsu88e	cubilin (intrinsic factor-cobalamin receptor)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80698481-2	chr10	80698381	80698581	+	900.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172457, intron 1 of 3)	RMER1B|Other|Other	3339.0	NM_172457	208228.0	Mm.49309	NM_172457	ENSMUSG00000003348	Mob3a	5330417K06Rik|A630029F06|AV218468|Mobkl2a	MOB kinase activator 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-156190384-6	chr2	156190250	156190450	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-6297.0	NM_172674	228829.0	Mm.427078	NM_172674	ENSMUSG00000038116	Phf20	6820402O20Rik	PHD finger protein 20	protein-coding	4.44102562257385	4.27499606587156	4.46936205916213	4.40103298776913	4.1289697022271	3.93726500331797	3.62685881352964	4.78473518290938	-0.263946337640692	0.534557241154203	0.95286627222167
Merged-chr5-150196013-1	chr5	150195913	150196113	+	679.0	f1_c57bl6.idr	Intergenic	Intergenic	-63917.0	NM_172887	320365.0	Mm.216590	NM_172887	ENSMUSG00000056602	Fry	13CDNA73|9330186A19Rik|AF346502|AI462658|C87180|D930046M03|cg003|mKIAA4143	FRY microtubule binding protein	protein-coding	1.80741618852496	1.6646240127332	2.15332770114137	1.69304093519799	1.72642090016473	1.07660137316795	1.75715592095566	1.04116125952121	-1.25874938730461	0.280634868116264	0.783412873231201
Merged-chr17-24167114-4	chr17	24167018	24167218	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361533, intron 1 of 2)	intron (NM_001361533, intron 1 of 2)	1691.0	NM_001361535	11984.0	Mm.30155	NM_009729	ENSMUSG00000024121	Atp6v0c	Atp6c|Atp6c2|Atp6l|Atpl|Atpl-rs1|PL16|VATL|Vma3	ATPase, H+ transporting, lysosomal V0 subunit C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-44050469-3	chr16	44050433	44050633	+	707.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8525.0	NM_001359085	207798.0	Mm.19316	NM_153528	ENSMUSG00000036292	Gramd1c	4921521N14Rik	GRAM domain containing 1C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-135147843-1	chr1	135147743	135147943	+	1000.0	f0_c57.idr	intron (NM_026823, intron 1 of 6)	intron (NM_026823, intron 1 of 6)	1009.0	NM_026823	68724.0	Mm.174998	NM_026823	ENSMUSG00000026426	Arl8a	1110033P22Rik|Arl10b|gie2	ADP-ribosylation factor-like 8A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-88234623-2	chr1	88234523	88234723	+	780.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001281466, intron 8 of 41)	intron (NM_001281466, intron 8 of 41)	7603.0	NM_001281466	100040766.0	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	Heatr7b1	maestro heat-like repeat family member 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34206080-4	chr17	34205973	34206173	+	855.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011530, intron 3 of 11)	B2_Mm2|SINE|B2	1594.0	NM_011530	21355.0	Mm.14814	NM_011530	ENSMUSG00000024339	Tap2	ABC18|AI462429|APT2|Abcb3|Ham-2|Ham2|MTP2|PSF2|RING11|Tap-2|Y1|jas	transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)	protein-coding	3.69854244570824	2.67906709140233	2.99551040658767	4.48452337805362	2.97687308221307	3.53919633530114	2.60278434344358	3.13471955016722	-0.877668781026407	0.173581329744471	0.640902961210202
Merged-chr8-108320641-4	chr8	108320553	108320753	+	888.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	264024.0	NR_077224	109215.0	Mm.65282	NR_077224	ENSMUSG00000110613	Lncbate1	3010033K07Rik|Lnc-BATE1	brown adipose tissue enriched long non-coding RNA 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-122610283-3	chr2	122610170	122610370	+	883.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025961, intron 1 of 8)	intron (NM_025961, intron 1 of 8)	1007.0	NM_025961	67092.0	Mm.29975	NM_025961	ENSMUSG00000027199	Gatm	1810003P21Rik|AI314789|AT	glycine amidinotransferase (L-arginine:glycine amidinotransferase)	protein-coding	2.79887770839875	2.72319504917162	2.74510432995455	2.12268726680571	2.54545884508956	3.54528842966586	1.50235625148947	3.32946262690532	0.601699358683386	0.458909552039734	0.919607527898796
Merged-chr7-47050572-4	chr7	47050482	47050682	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026436)	promoter-TSS (NM_026436)	-58.0	NM_026436	67893.0	Mm.27338	NM_026436	ENSMUSG00000010307	Tmem86a	1810054O13Rik|AI414959|AW742698	transmembrane protein 86A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91975821-4	chr2	91975677	91975877	+	828.520813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-12214.0	NM_138306	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-134087587-3	chr4	134087487	134087687	+	992.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001162970, exon 15 of 20)	exon (NM_001162970, exon 15 of 20)	7486.0	NM_013706	23833.0	Mm.24130	NM_013706	ENSMUSG00000000682	Cd52	AI463198|B7|B7-Ag|CAMPATH-1|CLS1|MB7	CD52 antigen	protein-coding	2.43906442951526	3.17918002791137	1.44247337894044	1.6130134370118	2.29314014824083	2.24342731664101	1.18067711491566	1.62169187254316	-1.01989341545271	0.322748235874935	0.825188237113397
Merged-chr18-73542196-4	chr18	73542101	73542301	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30504.0	NM_001039214	240396.0	Mm.24131	NM_001039214	ENSMUSG00000037253	Mex3c	A130001D14Rik|BC035207|BM-013|Rkhd2	mex3 RNA binding family member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-104219219-2	chr3	104219119	104219319	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133853, intron 1 of 21)	intron (NM_133853, intron 1 of 21)	1187.0	NM_133853	99470.0	Mm.264849	NM_133853	ENSMUSG00000052539	Magi3	4732496O19Rik|6530407C02Rik|AA407180|AI120132|mKIAA1634	membrane associated guanylate kinase, WW and PDZ domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-90070019-4	chr7	90069938	90070138	+	869.275024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40879.0	NR_110364	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	0.473636370744427	0.32923551476537	0.318965518711956	0.310923492168403	0.760769842945636	1.05705960241137	1.48165636290033	0.312336130391254	3.83051944370808	0.0356623511899592	1
Merged-chr3-61407079-4	chr3	61407017	61407217	+	978.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	42610.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-72950436-3	chr5	72950318	72950518	+	563.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153567, intron 3 of 8)	Lx8|LINE|L1	36056.0	NM_153567	75991.0	Mm.121285	NM_153567	ENSMUSG00000036087	Slain2	5033405K12Rik|8030444K12Rik|AI596370	SLAIN motif family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-181457998-2	chr2	181457898	181458098	+	691.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028125, intron 1 of 2)	intron (NM_028125, intron 1 of 2)	1428.0	NM_028125	72147.0	Mm.486504	NM_027656	ENSMUSG00000027583	Zbtb46	2610019F01Rik|4933406L05Rik|BZEL|Btbd4	zinc finger and BTB domain containing 46	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72868957-3	chr6	72868868	72869068	+	809.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019715, intron 1 of 6)	intron (NM_019715, intron 1 of 6)	30324.0	NM_001347231	74287.0	Mm.29194	NM_019715	ENSMUSG00000055239	Kcmf1	1700094M07Rik|Debt91|Pmcf	potassium channel modulatory factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-138196303-2	chr5	138196203	138196403	+	664.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_177878)	TTS (NM_177878)	1989.0	NM_177878	330216.0	Mm.19719	NM_177878	ENSMUSG00000049285	Mblac1	-	metallo-beta-lactamase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-31245815-3	chr2	31245714	31245914	+	816.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019681)	promoter-TSS (NM_019681)	-109.0	NM_019681	14299.0	Mm.249318	NM_019681	ENSMUSG00000062661	Ncs1	9430075O15Rik|A730032G13Rik|AI836659|Freq|Mfreq|NCS-1	neuronal calcium sensor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80165872-4	chr10	80165730	80165930	+	939.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 1 of 4)	intron (NR_038088, intron 1 of 4)	-2009.0	NM_007705	12696.0	Mm.17898	NM_007705	ENSMUSG00000045193	Cirbp	Cirp|R74941	cold inducible RNA binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-134287793-3	chr4	134287712	134287912	+	838.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163794)	promoter-TSS (NM_001163794)	34.0	NM_146156	230809.0	Mm.22778	NM_146156	ENSMUSG00000050890	Pdik1l	BC027088|stk35l2	PDLIM1 interacting kinase 1 like	protein-coding	1.8955544732119	2.47885030587549	2.87739203180176	3.19833261873891	3.12873137963565	3.09557057724193	2.55591460429002	2.59989156454673	0.320475107648494	0.66467500924231	0.992236411328325
Merged-chr8-71759015-1	chr8	71758915	71759115	+	728.0	f1_c57bl6.idr	Intergenic	Intergenic	-33334.0	NM_028715	74015.0	Mm.22025	NM_028715	ENSMUSG00000070000	Fcho1	3322402E17Rik|N28152	FCH domain only 1	protein-coding	2.83640691230375	3.40873890501849	2.54688962382695	2.47517768797967	2.68772780071392	2.34089842009733	2.42504631450891	3.29191946181865	-0.222938554976783	0.758500060078863	0.998431161219273
Merged-chr7-19065832-2	chr7	19065732	19065932	+	598.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_031255, exon 3 of 6)	exon (NM_031255, exon 3 of 6)	-10368.0	NM_010058	13401.0	Mm.2852	NM_010058	ENSMUSG00000030410	Dmwd	DMR-N9|Dm9	dystrophia myotonica-containing WD repeat motif	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-128536048-2	chr4	128535948	128536148	+	608.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001281955, intron 56 of 70)	intron (NM_001281955, intron 56 of 70)	74050.0	NM_177758	269585.0	Mm.153291	NM_177758	ENSMUSG00000061894	Zscan20	C130001F22|Zfp31|Zkscan20	zinc finger and SCAN domains 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101175992-2	chr11	101175892	101176092	+	703.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007721)	promoter-TSS (NM_007721)	-125.0	NM_016782	53321.0	Mm.474527	NM_016782	ENSMUSG00000017167	Cntnap1	AI841080|Caspr|NCP1|Nrxn4|p190|shm	contactin associated protein-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-165587895-4	chr1	165587800	165588000	+	910.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46641.0	NM_001001880	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-100681488-2	chr15	100681388	100681588	+	756.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_033612, intron 5 of 7)	intron (NM_033612, intron 5 of 7)	6432.0	NM_033612	109901.0	Mm.2131	NM_033612	ENSMUSG00000023031	Cela1	1810009A17Rik|1810062B19Rik|Ela-1|Ela1|PC-TsF	chymotrypsin-like elastase family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67535557-4	chr10	67535440	67535640	+	865.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2329.0	NM_010118	13654.0	Mm.290421	NM_010118	ENSMUSG00000037868	Egr2	Egr-2|Krox-20|Krox20|NGF1-B|Zfp-25|Zfp-6	early growth response 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10967643-2	chr19	10967543	10967743	+	685.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023529, intron 3 of 8)	intron (NM_023529, intron 3 of 8)	7027.0	NM_023529	69826.0	Mm.273404	NM_023529	ENSMUSG00000024731	Ms4a10	2010001N17Rik	membrane-spanning 4-domains, subfamily A, member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-56336065-4	chr12	56335940	56336140	+	932.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145442, intron 6 of 8)	intron (NM_145442, intron 6 of 8)	9854.0	NM_145442	217588.0	Mm.25656	NM_145442	ENSMUSG00000021028	Mbip	4933408E06Rik	MAP3K12 binding inhibitory protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-27581065-2	chr7	27580998	27581198	+	814.25	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_175107, exon 10 of 10)	3' UTR (NM_175107, exon 10 of 10)	-10454.0	NM_001110208	11652.0	Mm.177194	NM_007434	ENSMUSG00000004056	Akt2	2410016A19Rik|AW554154|PKB|PKBbeta	thymoma viral proto-oncogene 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44182489-4	chr9	44182372	44182572	+	830.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007619, intron 2 of 15)	B3|SINE|B2	47814.0	NM_001359530	84004.0	Mm.275003	NM_023061	ENSMUSG00000032135	Mcam	1-gicerin|AV025631|CD146|CD149|Muc18|s-endo|s-gicerin	melanoma cell adhesion molecule	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-94528097-2	chr16	94527997	94528197	+	875.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1468.0	NM_007834	13185.0	Mm.7472	NM_007834	ENSMUSG00000022898	Dscr3	AW538125|Dcra	DSCR3 arrestin fold containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-34568761-2	chr14	34568661	34568861	+	961.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039071, intron 5 of 12)	intron (NM_001039071, intron 5 of 12)	19846.0	NM_001039074	24131.0	Mm.29733	NM_011918	ENSMUSG00000021798	Ldb3	AW742271|PDLIM6|ZASP	LIM domain binding 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-54427928-5	chr11	54427946	54428146	+	767.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-10133.0	NM_173753	216742.0	Mm.34087	NM_173753	ENSMUSG00000035992	Fnip1	A730024A03Rik|AI838773|AW557298	folliculin interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-45520312-4	chr5	45520208	45520408	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025895)	promoter-TSS (NM_025895)	79.0	NM_025895	66999.0	Mm.283045	NM_025895	ENSMUSG00000015804	Med28	1500003D12Rik|AI451633|AU045690|Eg1|FKSG20|magicin	mediator complex subunit 28	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-7130481-2	chr7	7130381	7130581	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_029584)	TTS (NM_029584)	6274.0	NM_029584	76373.0	Mm.159732	NM_029584	ENSMUSG00000063535	Zfp773	2810409K11Rik	zinc finger protein 773	protein-coding	-0.973244663428994	-0.952315594721777	-0.00450891433157474	-0.968117103546747	-0.972477992091202	-0.949249181104308	-0.963262521912125	-0.967581074445158	-3.30458610020401	0.291235735201707	1
Merged-chr4-123565247-3	chr4	123565143	123565343	+	709.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199137, intron 1 of 92)	intron (NM_001199137, intron 1 of 92)	-51177.0	NR_105824	102465214.0		NR_105824	ENSMUSG00000099005	Mir6398	Gm27657|mmu-mir-6398	microRNA 6398	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-151045995-2	chr4	151045895	151046095	+	923.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1330.0	NM_001289878	18628.0	Mm.121361	NM_011067	ENSMUSG00000028957	Per3	2810049O06Rik|mPer3	period circadian clock 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-74529364-4	chr17	74529252	74529452	+	988.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007566, intron 1 of 72)	intron (NM_007566, intron 1 of 72)	1057.0	NM_007566	12211.0	Mm.442564	NM_007566	ENSMUSG00000024073	Birc6	A430032G04Rik|A430040A19Rik|AA501170|Bruce|D630005A10Rik|mKIAA1289	baculoviral IAP repeat-containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-102720192-4	chr4	102720106	102720306	+	949.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-39929.0	NM_001285860	73094.0	Mm.54201	NM_144906	ENSMUSG00000028524	Sgip1	3110007P09Rik|SGIP1alpha|gag	SH3-domain GRB2-like (endophilin) interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45522017-4	chr7	45521933	45522133	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008654)	TTS (NM_008654)	4235.0	NM_008654	17872.0	Mm.4048	NM_008654	ENSMUSG00000040435	Ppp1r15a	9630030H21|Gadd34|Myd116	protein phosphatase 1, regulatory (inhibitor) subunit 15A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106215659-1	chr11	106215559	106215759	+	598.0	f1_c57bl6.idr	intron (NM_026009, intron 1 of 12)	intron (NM_026009, intron 1 of 12)	708.0	NM_026009	67163.0	Mm.22109	NM_026009	ENSMUSG00000078622	Ccdc47	2610204L23Rik|C88307|asp4|calumin	coiled-coil domain containing 47	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-29338858-4	chr10	29338759	29338959	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110195, intron 5 of 5)	intron (NM_001110195, intron 5 of 5)	18854.0	NM_001284279	68031.0	Mm.28930	NM_026518	ENSMUSG00000038876	Rnf146	2610509H23Rik|Iduna	ring finger protein 146	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-84337903-4	chr10	84337789	84337989	+	746.408325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17A|LTR|ERVK	102582.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-38211845-3	chr18	38211739	38211939	+	854.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2077.0	NM_029357	75599.0	Mm.36560	NM_029357	ENSMUSG00000051375	Pcdh1	2010005A06Rik|AI585920	protocadherin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-32123720-4	chr12	32123627	32123827	+	863.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62448.0	NM_011158	19088.0	Mm.25594	NM_011158	ENSMUSG00000002997	Prkar2b	AI451071|AW061005|PKARIIbeta|Pkarb2|RII(beta)	protein kinase, cAMP dependent regulatory, type II beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-56036102-4	chr16	56036011	56036211	+	741.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029092, intron 1 of 1)	intron (NM_029092, intron 1 of 1)	1663.0	NM_029092	52575.0	Mm.288742	NM_029092	ENSMUSG00000044763	Trmt10c	1300018J16Rik|D16Ertd454e|Rg9mtd1|Rnmtd1	tRNA methyltransferase 10C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-60745602-4	chr18	60745511	60745711	+	875.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001348146, intron 1 of 6)	intron (NM_001348146, intron 1 of 6)	1135.0	NM_001348101	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-38837332-4	chr19	38837206	38837406	+	893.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001362424, exon 1 of 11)	exon (NM_001362424, exon 1 of 11)	727.0	NM_001362424	209478.0	Mm.391153	NM_145952	ENSMUSG00000048720	Tbc1d12	BC033574	TBC1D12: TBC1 domain family, member 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132198636-2	chr4	132198536	132198736	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145393, intron 4 of 4)	RSINE1|SINE|B4	13620.0	NM_145393	213541.0	Mm.23998	NM_145393	ENSMUSG00000040025	Ythdf2	9430020E02Rik|HGRG8|NY-REN-2	YTH domain family 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-59163005-1	chr2	59162905	59163105	+	659.0	f0_balb.idr	intron (NM_175464, intron 1 of 20)	intron (NM_175464, intron 1 of 20)	2155.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-24966425-4	chr19	24966354	24966554	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4838.0	NM_146097	226043.0	Mm.272127	NM_146097	ENSMUSG00000024878	Cbwd1	AV349248|BC018472	COBW domain containing 1	protein-coding	2.04513791937212	4.33253887701804	3.36046138277726	3.51039141723096	3.55912008337353	3.97369758073811	3.07177696984712	3.45125828126119	0.0193816953103543	0.975731505238323	0.998431161219273
Merged-chr2-27300564-2	chr2	27300464	27300664	+	646.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_133905, intron 4 of 29)	intron (NR_133905, intron 4 of 29)	-53261.0	NM_138665	192166.0	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-108596183-3	chr8	108596077	108596277	+	783.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11500.0	NR_077224	109215.0	Mm.65282	NR_077224	ENSMUSG00000110613	Lncbate1	3010033K07Rik|Lnc-BATE1	brown adipose tissue enriched long non-coding RNA 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-57766251-2	chr6	57766151	57766351	+	954.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_146168, intron 3 of 4)	Lx5c|LINE|L1	58874.0	NM_146168	232023.0	Mm.24642	NM_146168	ENSMUSG00000037788	Vopp1	AW146242|Ecop	vesicular, overexpressed in cancer, prosurvival protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-137890814-4	chr4	137890742	137890942	+	985.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199307, intron 1 of 19)	intron (NM_199307, intron 1 of 19)	28605.0	NM_199307	230857.0	Mm.401062	NM_199307	ENSMUSG00000057530	Ece1	AW322500|ECE-1|ECE-1a|ECE-1b|ECE-1d	endothelin converting enzyme 1	protein-coding	4.98307342030697	4.99411915963657	5.30807937667477	5.36358757756818	3.75587591308043	4.36326082729322	3.19787329854996	4.21454539275943	-1.52973694109937	7.6082294569119e-05	0.00248291882675979
Merged-chr1-125461622-2	chr1	125461522	125461722	+	989.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TTCC)n|Simple_repeat|Simple_repeat	-25895.0	NM_001205385	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	0.0434167756309831	-0.496267531085851	-0.499971334865586	-0.502823233414139	0.0546277025787766	-0.495431500287674	-0.499155146778299	-0.502325373264262	0.0419527451125213	0.988073760716967	1
Merged-chr7-55935309-4	chr7	55935191	55935391	+	893.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001256131, intron 5 of 5)	intron (NM_001256131, intron 5 of 5)	27202.0	NM_001256133	93790.0	Mm.37249	NM_023647	ENSMUSG00000030452	Nipa2	2600017P10Rik|3830408P04Rik|AB041581	non imprinted in Prader-Willi/Angelman syndrome 2 homolog (human)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19279754-4	chr7	19279688	19279888	+	754.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177691, exon 1 of 5)	exon (NM_177691, exon 1 of 5)	261.0	NM_177691	232941.0	Mm.134068	NM_177691	ENSMUSG00000030402	Ppm1n	A930002H20|C79127	protein phosphatase, Mg2+/Mn2+ dependent, 1N (putative)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-77239858-4	chr11	77239763	77239963	+	897.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177710, intron 1 of 14)	intron (NM_177710, intron 1 of 14)	23438.0	NM_177710	237860.0	Mm.440381	NM_177710	ENSMUSG00000037926	Ssh2	SSH-2|SSH-2L|mSSH-2L	slingshot protein phosphatase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153348593-4	chr2	153348495	153348695	+	769.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039939, intron 1 of 11)	intron (NM_001039939, intron 1 of 11)	2456.0	NM_001039939	228790.0	Mm.330677	NM_001039939	ENSMUSG00000042548	Asxl1	mKIAA0978	additional sex combs like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91925350-1	chr2	91925250	91925450	+	610.0	f0_balb.idr	intron (NM_007699, intron 1 of 1)	intron (NM_007699, intron 1 of 1)	3161.0	NM_007699	12672.0	Mm.330405	NM_007699	ENSMUSG00000040495	Chrm4	Chrm-4|M4	cholinergic receptor, muscarinic 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-75638341-4	chr2	75638242	75638442	+	954.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR6_Mm|LTR|ERV1	-20917.0	NM_146130	229279.0	Mm.316306	NM_053263	ENSMUSG00000059005	Hnrnpa3	2410013L13Rik|2610209F03Rik|2610510D13Rik|Hnrpa3	heterogeneous nuclear ribonucleoprotein A3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-100870488-2	chr15	100870388	100870588	+	813.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001077499)	promoter-TSS (NM_001077499)	-157.0	NM_001077499	20273.0	Mm.385012	NM_011323	ENSMUSG00000023033	Scn8a	AI853486|C630029C19Rik|NaCh6|Nav1.6|dmu|med|mnd-2|mnd2|nmf2|nmf335|nmf58|nur14|seal	sodium channel, voltage-gated, type VIII, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-144239328-2	chr1	144239204	144239404	+	849.333374	f0_balb.idr|f0_c57.idr	Intergenic	Lx8b|LINE|L1	9800.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101544104-2	chr11	101544004	101544204	+	963.9166869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_009764, intron 2 of 22)	intron (NM_009764, intron 2 of 22)	7851.0	NM_009764	12189.0	Mm.244975	NM_009764	ENSMUSG00000017146	Brca1	-	breast cancer 1, early onset	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-79581557-3	chr1	79581453	79581653	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	90419.0	NM_183027	252903.0	Mm.32409	NM_183027	ENSMUSG00000054702	Ap1s3	1190009B22|Jr2|[s]3A	adaptor-related protein complex AP-1, sigma 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5072076-4	chr19	5071951	5072151	+	939.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3973.0	NM_054042	70445.0	Mm.29597	NM_054042	ENSMUSG00000056481	Cd248	2610111G01Rik|AI842296|Cd164l1|Tem1	CD248 antigen, endosialin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-9151311-2	chr13	9151211	9151411	+	698.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_172585, intron 11 of 17)	intron (NM_172585, intron 11 of 17)	57430.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-30940523-2	chr9	30940423	30940623	+	591.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2039.0	NM_013906	30806.0	Mm.100582	NM_013906	ENSMUSG00000031994	Adamts8	METH-2|METH2	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-99211088-4	chr3	99210940	99211140	+	883.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027462, intron 4 of 5)	intron (NM_027462, intron 4 of 5)	-11587.0	NR_105852	102465230.0		NR_105852	ENSMUSG00000098918	Mir6481	Gm27744|mmu-mir-6481	microRNA 6481	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-41609039-2	chr15	41608939	41609139	+	721.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_152565, intron 2 of 17)	intron (NR_152565, intron 2 of 17)	159936.0	NM_001358977	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-29147657-4	chr11	29147551	29147751	+	958.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027869, intron 17 of 27)	intron (NM_027869, intron 17 of 27)	16900.0	NM_027869	71701.0	Mm.211131	NM_027869	ENSMUSG00000020464	Pnpt1	1200003F12Rik|Old35|PNPase|Pnptl1	polyribonucleotide nucleotidyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-119003481-4	chr14	119003397	119003597	+	698.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081252, intron 34 of 38)	B3|SINE|B2	65565.0	NM_008929	100037258.0	Mm.12616	NM_008929	ENSMUSG00000022136	Dnajc3	AA408985|AU067833|Dnajc3a|Dnajc3b|Prkri|mp58|p58|p58IPK	DnaJ heat shock protein family (Hsp40) member C3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32585771-2	chr2	32585671	32585871	+	741.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1307.0	NM_001276425	20448.0	Mm.27446	NM_011373	ENSMUSG00000079442	St6galnac4	SIAT7-D|ST6GalNAcIV|Siat7d	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-44413342-2	chr19	44413242	44413442	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB8|LINE|L1	-5633.0	NM_009127	20249.0	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-125724762-2	chr2	125724660	125724860	+	562.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199022)	promoter-TSS (NM_199022)	-612.0	NM_199022	271849.0	Mm.425101	NM_199022	ENSMUSG00000035109	Shc4	6230417E10Rik|9930029B02Rik|Gm685|RaLP	SHC (Src homology 2 domain containing) family, member 4	protein-coding	0.962044057383862	1.13121003980692	1.07743012181856	0.465029641343319	1.15342545930447	0.482886340932682	0.473936185609603	0.466243951904155	-1.2405261613614	0.483088791807005	1
Merged-chr2-129295626-2	chr2	129295526	129295726	+	750.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_181589, intron 2 of 8)	B4A|SINE|B4	1586.0	NM_181589	70466.0	Mm.45785	NM_181589	ENSMUSG00000048327	Ckap2l	2010016H04Rik|2610318C08Rik|AV070319|radmis|rdm	cytoskeleton associated protein 2-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-14669607-4	chr8	14669542	14669742	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172910, intron 4 of 15)	intron (NM_172910, intron 4 of 15)	-218894.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-45059829-2	chr19	45059729	45059929	+	745.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR25A|LTR|ERVK	12253.0	NM_001362381	94280.0	Mm.36169	NM_053197	ENSMUSG00000025212	Sfxn3	-	sideroflexin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133154226-1	chr4	133154126	133154326	+	594.5	f0_balb.idr	intron (NM_153423, intron 1 of 8)	CT-rich|Low_complexity|Low_complexity	23593.0	NM_153423	242687.0	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	2.11016573410329	3.16305295374518	2.73550101482694	3.21856604677723	2.64822051644589	2.85390070814597	2.62655728263325	3.80836781304514	0.388237180587469	0.585999028485335	0.967449368090758
Merged-chr13-93301156-4	chr13	93301064	93301264	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2593.0	NM_147176	26556.0	Mm.37533	NM_011982	ENSMUSG00000007617	Homer1	PSD-Zip45|SYN47|Ves-1|homer-1|vesl-1	homer scaffolding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-53315159-2	chr19	53315059	53315259	+	982.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360348, intron 1 of 5)	intron (NM_001360348, intron 1 of 5)	3714.0	NM_001360348	17859.0	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80693772-7	chr10	80693616	80693816	+	854.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172457, intron 1 of 3)	intron (NM_172457, intron 1 of 3)	8104.0	NM_172457	208228.0	Mm.49309	NM_172457	ENSMUSG00000003348	Mob3a	5330417K06Rik|A630029F06|AV218468|Mobkl2a	MOB kinase activator 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-156197558-4	chr4	156197435	156197635	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021604)	promoter-TSS (NM_021604)	-47.0	NM_021604	11603.0	Mm.273098	NM_021604	ENSMUSG00000041936	Agrn	Agrin|nmf380	agrin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-28931956-2	chr6	28931856	28932056	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-90663.0	NR_029567	387237.0		NR_029567	ENSMUSG00000065469	Mir129-1	Mirn129-1|Mirn129b|miR-129b|mir-129-1	microRNA 129-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-75172239-2	chr1	75172139	75172339	+	606.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001159906)	TTS (NM_001159906)	3504.0	NM_026846	68818.0	Mm.32646	NM_026846	ENSMUSG00000026197	Zfand2b	1110060O18Rik|C81256	zinc finger, AN1 type domain 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-14813192-3	chr18	14813117	14813317	+	674.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001100449, exon 7 of 15)	exon (NM_001100449, exon 7 of 15)	29972.0	NM_001100449	72504.0	Mm.312233	NM_001100449	ENSMUSG00000054321	Taf4b	105kDa|2610524B04Rik|4932409F03Rik|AW987595|TAFII-105|TAFII105|Taf2c2	TATA-box binding protein associated factor 4b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-69228136-4	chr12	69228014	69228214	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011133)	promoter-TSS (NM_011133)	76.0	NM_011133	18974.0	Mm.9199	NM_011133	ENSMUSG00000020974	Pole2	-	polymerase (DNA directed), epsilon 2 (p59 subunit)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-51136604-4	chr13	51136503	51136703	+	981.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011462, intron 1 of 3)	intron (NM_011462, intron 1 of 3)	2285.0	NM_011462	20729.0	Mm.188432	NM_011462	ENSMUSG00000021395	Spin1	Spin	spindlin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133456488-2	chr4	133456414	133456614	+	609.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23619.0	NM_175307	100342.0	Mm.204656	NM_175307	ENSMUSG00000046694	Fam46b	4732473B16Rik|AU045678|AU046069	family with sequence similarity 46, member B	protein-coding	0.357313790306602	-0.0114086063887159	-0.0171404631900225	0.415481015919601	-0.0278503308886382	-0.0101184025642536	-0.0158750872135392	0.803334837154763	0.361909031067812	0.871535410317861	1
Merged-chr7-25276206-2	chr7	25276106	25276306	+	561.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001302811, intron 2 of 20)	intron (NM_001302811, intron 2 of 20)	-5973.0	NM_027882	71722.0	Mm.28833	NM_027882	ENSMUSG00000005442	Cic	1200010B10Rik|mKIAA0306	capicua transcriptional repressor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-21536927-4	chr17	21536832	21537032	+	645.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144515, intron 1 of 4)	RLTR19|LTR|ERVK	-1054.0	NR_131123	319870.0	Mm.488274	NR_131123	ENSMUSG00000097781	9330136K24Rik	-	RIKEN cDNA 9330136K24 gene	ncRNA	0.405136083715334	0.691515831370924	1.7872548308566	0.422553242221586	0.407764245264474	0.69828817346835	0.667802762168975	1.32418126764026	-0.643165411388922	0.696977728575371	0.997929106458421
Merged-chr2-160619463-4	chr2	160619366	160619566	+	906.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-26431.0	NM_009408	21969.0	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-76837569-6	chr12	76837459	76837659	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145927)	promoter-TSS (NM_145927)	92.0	NM_145927	110606.0	Mm.151174	NM_145927	ENSMUSG00000033373	Fntb	2010013E13Rik|AA409500	farnesyltransferase, CAAX box, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-37400507-4	chr10	37400417	37400617	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-261591.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-51488987-2	chr1	51488887	51489087	+	832.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20B3|LTR|ERVK	-10588.0	NM_001310549	109019.0	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-116463713-2	chr4	116463613	116463813	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001042743, intron 1 of 29)	CpG	468.0	NM_001042743	17776.0	Mm.9287	NM_008641	ENSMUSG00000003810	Mast2	MAST205|Mtssk	microtubule associated serine/threonine kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-155062222-4	chr1	155062116	155062316	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21048.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-108491436-2	chr9	108491336	108491536	+	639.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_008483)	TTS (NM_008483)	760.0	NM_001168373	71472.0	Mm.289706	NM_027804	ENSMUSG00000006676	Usp19	8430421I07Rik|AI047774|Zmynd9	ubiquitin specific peptidase 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-105066621-5	chr3	105066548	105066748	+	930.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029228)	promoter-TSS (NM_029228)	-196.0	NM_029228	75269.0	Mm.307994	NM_029228	ENSMUSG00000051788	4930564D02Rik	-	RIKEN cDNA 4930564D02 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-78511947-2	chr1	78511847	78512047	+	772.75	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_026713, exon 2 of 7)	5' UTR (NM_026713, exon 2 of 7)	887.0	NM_026713	68393.0	Mm.41325	NM_026713	ENSMUSG00000012187	Mogat1	0610030A14Rik|1110064N14Rik|Dgat2l|Dgat2l1|MGAT1|WI1-2612I11.1|mDC2	monoacylglycerol O-acyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-38368855-3	chr2	38368730	38368930	+	912.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290646, intron 4 of 4)	intron (NM_001290646, intron 4 of 4)	17522.0	NM_010710	16870.0	Mm.142856	NM_010710	ENSMUSG00000000247	Lhx2	LH2A|Lh-2|Lim2|ap|apterous	LIM homeobox protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90579258-4	chr2	90579174	90579374	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	1373.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98916750-2	chr11	98916650	98916850	+	762.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025779, intron 8 of 11)	B2_Mm2|SINE|B2	8599.0	NM_011799	23834.0	Mm.20912	NM_011799	ENSMUSG00000017499	Cdc6	CDC18L	cell division cycle 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-102226177-1	chr15	102226077	102226277	+	545.0	f1_balb.idr	intron (NM_013566, intron 2 of 14)	intron (NM_013566, intron 2 of 14)	5758.0	NM_013566	16421.0	Mm.58	NM_013566	ENSMUSG00000001281	Itgb7	Ly69	integrin beta 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-25971812-2	chr15	25971712	25971912	+	581.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001277318, exon 7 of 7)	exon (NM_001277318, exon 7 of 7)	-12554.0	NM_144523	52521.0	Mm.29145	NM_144523	ENSMUSG00000052253	Zfp622	1110033B05Rik|D15Ertd806e|ZPR9|Znf622	zinc finger protein 622	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41384632-3	chr19	41384564	41384764	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 1 of 16)	intron (NM_031376, intron 1 of 16)	406.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	3.83201885553193	3.54602582059185	3.0178814444389	4.56429305808441	2.66683542560723	2.71884827688666	2.43897917900099	3.94365622404298	-1.14955857126571	0.0740108570834464	0.410891375174802
Merged-chr5-135616791-2	chr5	135616691	135616891	+	596.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15863.0	NM_001357037	215160.0	Mm.295438	NM_031398	ENSMUSG00000039917	Rhbdd2	0610011L13Rik|AI480532|Rhbdl7|Usmg1	rhomboid domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101230455-4	chr7	101230343	101230543	+	832.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199012, intron 8 of 20)	intron (NM_199012, intron 8 of 20)	71645.0	NM_001111111	73683.0	Mm.275744	NM_001111111	ENSMUSG00000047767	Atg16l2	2410118P20Rik	autophagy related 16-like 2 (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-132103588-3	chr3	132103502	132103702	+	878.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020265, intron 1 of 3)	intron (NM_020265, intron 1 of 3)	18310.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-95689277-2	chr11	95689177	95689377	+	769.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22320.0	NM_008831	18673.0	Mm.263862	NM_008831	ENSMUSG00000038845	Phb	Bap32	prohibitin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-84119375-4	chr17	84119264	84119464	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40704.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153084409-4	chr2	153084304	153084504	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18449.0	NM_145536	228788.0	Mm.299979	NM_145536	ENSMUSG00000027474	Ccm2l	-	cerebral cavernous malformation 2-like	protein-coding	5.32954674565208	5.01769989663551	6.07832335653886	4.85905609679109	5.29328724909542	5.71737079761488	5.85413473482438	5.35710215064888	0.186906755433519	0.562338169549684	0.960362415684079
Merged-chr14-40979183-4	chr14	40979087	40979287	+	916.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12291.0	NM_145928	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152529748-2	chr1	152529648	152529848	+	891.599976	f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 14 of 17)	intron (NM_016846, intron 14 of 17)	95469.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80227124-1	chr7	80227024	80227224	+	565.0	f1_balb.idr	TTS (NM_013659)	TTS (NM_013659)	5681.0	NM_001291276	23991.0	Mm.30217	NM_011870	ENSMUSG00000030538	Cib1	Cibkip|Kip|Prkdcip	calcium and integrin binding 1 (calmyrin)	protein-coding	0.913825855542664	0.800176472539471	0.967841109074591	1.43878239980434	1.65803121032326	0.802304507257175	0.792829077217441	1.7946264202477	1.36812661305265	0.363170240173836	0.858855050154424
Merged-chr4-141622252-1	chr4	141622152	141622352	+	588.0	f1_balb.idr	exon (NM_001013780, exon 3 of 5)	exon (NM_001013780, exon 3 of 5)	1582.0	NM_001013780	384071.0	Mm.295682	NM_001013780	ENSMUSG00000040740	Slc25a34	Gm1369	solute carrier family 25, member 34	protein-coding	0.688168973203239	0.274239183053564	0.269216728951921	0.265373296962522	0.259989280217644	0.275377647004482	0.883881842691161	0.915019892960358	1.75648387033078	0.400275405433533	1
Merged-chr16-13903118-4	chr16	13903043	13903243	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053181)	promoter-TSS (NM_053181)	2.0	NM_001039533	94184.0	Mm.171484	NM_053181	ENSMUSG00000022680	Pdxdc1	2210010A19Rik|AA415817|Kiaa0251-hp	pyridoxal-dependent decarboxylase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-82805613-2	chr18	82805513	82805713	+	578.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-46574.0	NR_045389	76961.0	Mm.396392	NR_045389	ENSMUSG00000101773	2210420H20Rik	-	RIKEN cDNA 2210420H20 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-52158830-3	chr6	52158763	52158963	+	852.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311118)	promoter-TSS (NM_001311118)	339.0	NR_131181	105242658.0	Mm.372521	NR_131181	ENSMUSG00000087658	Hotairm1	Gm15051|Hoxaas1	Hoxa transcript antisense RNA, myeloid-specific 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-106881255-4	chr4	106881176	106881376	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-30194.0	NM_198438	72475.0	Mm.195635	NM_023672	ENSMUSG00000061887	Ssbp3	2610021L12Rik|2610200M23Rik|5730488C10Rik|AI854733|AW551939|LAST|SSDP1	single-stranded DNA binding protein 3	protein-coding	1.48823435444919	1.44898977721877	2.96944204431537	2.23131394625891	2.1277307334111	1.86868770447005	1.15427449747188	1.89327678535735	-0.965505204423107	0.358974239704694	0.856306289008338
Merged-chr10-42258186-2	chr10	42258086	42258286	+	621.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019740, intron 2 of 3)	intron (NM_019740, intron 2 of 3)	18556.0	NM_019740	56484.0	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-107280026-2	chr13	107279926	107280126	+	690.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-189796.0	NR_045083	105120.0	Mm.417700	NR_045083	ENSMUSG00000114780	AI197445	-	expressed sequence AI197445	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-23142528-2	chr19	23142423	23142623	+	924.0	f0_balb.idr|f0_c57.idr	intron (NM_010638, intron 1 of 1)	CpG	1297.0	NM_010638	16601.0	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|Gm9971	Kruppel-like factor 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-24595858-4	chr16	24595749	24595949	+	970.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 4 of 12)	intron (NM_178665, intron 4 of 12)	66535.0	NR_038091	624582.0	Mm.439775	NR_038091		Morf4l1-ps1	A730098P11Rik	mortality factor 4 like 1, pseudogene 1	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-17603801-1	chr15	17603701	17603901	+	1000.0	f0_balb.idr	Intergenic	Intergenic	765826.0	NR_045711	70886.0	Mm.399021	NR_045711	ENSMUSG00000098150	4921515E04Rik	-	RIKEN cDNA 4921515E04 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-11202488-1	chr18	11202388	11202588	+	901.3333130000001	f0_balb.idr	Intergenic	L2a|LINE|L2	-149921.0	NR_105022	68434.0	Mm.57626	NR_105022	ENSMUSG00000097222	1010001N08Rik	Gata6as	RIKEN cDNA 1010001N08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-25301788-3	chr14	25301724	25301924	+	748.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-157361.0	NM_001310666	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-79686207-2	chr15	79686107	79686307	+	816.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_028792, intron 1 of 3)	intron (NM_028792, intron 1 of 3)	1665.0	NM_028792	74158.0	Mm.323393	NM_028792	ENSMUSG00000022426	Josd1	1300006C06Rik|mKIAA0063	Josephin domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-111821935-3	chr13	111821830	111822030	+	935.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-12937.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-68073530-2	chr7	68073430	68073630	+	813.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_010513, intron 2 of 20)	intron (NM_010513, intron 2 of 20)	121273.0	NM_010513	16001.0	Mm.275742	NM_010513	ENSMUSG00000005533	Igf1r	A330103N21Rik|CD221|D930020L01|IGF-1R|hyft	insulin-like growth factor I receptor	protein-coding	0.0203254928835245	-0.320769223029584	-0.510323938231429	-0.512992084792268	-0.516748322201663	-0.158339526613903	-0.509559671387873	-0.512526564618816	-1.24141615435994	0.641001999512439	1
Merged-chr18-39735020-2	chr18	39734920	39735120	+	675.599976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38477.0	NM_011033	18459.0	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-92093899-4	chr5	92093808	92094008	+	953.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359197, intron 1 of 10)	intron (NM_001359197, intron 1 of 10)	-10164.0	NM_001080795	23881.0	Mm.290530	NM_011816	ENSMUSG00000029405	G3bp2	AA409541|E430034L04Rik|G3BP|mKIAA0660	GTPase activating protein (SH3 domain) binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191575651-4	chr1	191575560	191575760	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001306203)	promoter-TSS (NM_001306203)	24.0	NM_001306204	77065.0	Mm.338175	NM_178632	ENSMUSG00000037461	Ints7	5930412E23Rik|int7	integrator complex subunit 7	protein-coding	6.91925703174695	6.23384754991976	6.96508355712176	6.80110142247089	7.06499304003252	6.37127517450833	7.16862608977528	6.81541458788736	0.136238651988076	0.530054970749327	0.950119915711771
Merged-chr19-10392070-1	chr19	10391970	10392170	+	548.0	f1_balb.idr	intron (NM_018801, intron 1 of 8)	intron (NM_018801, intron 1 of 8)	2980.0	NM_173068	54525.0	Mm.182654	NM_018801	ENSMUSG00000024743	Syt7	AI851541|B230112P13Rik	synaptotagmin VII	protein-coding	-0.702312242540109	-0.693450061004827	-0.696370373205989	-0.544310136588067	-0.342522164174275	-0.69278953670099	-0.695727679544283	-0.29235372316723	2.17781160937052	0.428359346649788	1
Merged-chr7-80079022-4	chr7	80078917	80079117	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175433, intron 1 of 4)	intron (NM_175433, intron 1 of 4)	-3760.0	NR_045695	100859962.0	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-64510058-2	chr4	64509958	64510158	+	559.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	-233455.0	NR_151546	102633436.0	Mm.411637	NR_151546		Gm11217	-	predicted gene 11217	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-20648465-2	chr2	20648365	20648565	+	559.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177630, intron 2 of 17)	intron (NM_001177630, intron 2 of 17)	128952.0	NM_001177631	208618.0	Mm.237935	NM_029895	ENSMUSG00000036617	Etl4	6620402G01Rik|9430077C05Rik|BC026657|E330027G05Rik|Etl-4|Skt	enhancer trap locus 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-95032254-2	chr13	95032154	95032354	+	691.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_172263, intron 17 of 19)	MTC|LTR|ERVL-MaLR	55910.0	NM_172590	218460.0	Mm.33856	NM_172590	ENSMUSG00000042015	Wdr41	B830029I03Rik|MSTP048	WD repeat domain 41	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-79329076-2	chr15	79328976	79329176	+	544.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199024)	promoter-TSS (NM_001199024)	-705.0	NM_001199023	53357.0	Mm.155620	NM_016915	ENSMUSG00000042632	Pla2g6	BB112799|PNPLA9|iPLA(2)beta|iPLA2|iPLA2beta	phospholipase A2, group VI	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-65678098-2	chr18	65677998	65678198	+	635.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361052, intron 6 of 8)	intron (NM_001361052, intron 6 of 8)	-20170.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	-0.0482567691901335	-0.0320653157518137	0.530283602858918	0.383794911424508	-0.0472455827378234	-0.0308700493906929	0.541388136710926	-0.0407457347261473	-0.7171918176639	0.753383246836115	1
Merged-chr13-74022324-2	chr13	74022224	74022424	+	699.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_182839, intron 2 of 3)	intron (NM_182839, intron 2 of 3)	12905.0	NM_182839	72948.0	Mm.39752	NM_182839	ENSMUSG00000021573	Tppp	2900041A09Rik|AI849835	tubulin polymerization promoting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-50125816-4	chr18	50125703	50125903	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2398.0	NM_008292	15488.0	Mm.277857	NM_008292	ENSMUSG00000024507	Hsd17b4	17-beta-HSD|17[b]-HSD|DBP|MFE-2|MFP2|MPF-2|Mfp-2|perMFE-2	hydroxysteroid (17-beta) dehydrogenase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28907587-2	chr17	28907487	28907687	+	648.549988	f1_balb.idr|f1_c57bl6.idr	TTS (NR_045457)	TTS (NR_045457)	2322.0	NR_045457	74179.0	Mm.248931	NR_045457	ENSMUSG00000085333	1700030A11Rik	-	RIKEN cDNA 1700030A11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97147836-2	chr6	97147736	97147936	+	657.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175313, intron 2 of 17)	intron (NM_175313, intron 2 of 17)	1047.0	NM_175313	101351.0	Mm.116802	NM_175313	ENSMUSG00000035245	Eogt	A130022J15Rik|AI447490|AW214473|AW259391|Aer61	EGF domain-specific O-linked N-acetylglucosamine (GlcNAc) transferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80836137-4	chr7	80836036	80836236	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25972.0	NM_009553	22691.0	Mm.358645	NM_009553	ENSMUSG00000038797	Zscan2	Zfp-29|Zfp29	zinc finger and SCAN domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-35166279-2	chr7	35166179	35166379	+	598.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20106.0	NM_017394	53896.0	Mm.35567	NM_017394	ENSMUSG00000030495	Slc7a10	AL024237|Asc-1|D7Bwg0847e	solute carrier family 7 (cationic amino acid transporter, y+ system), member 10	protein-coding	-1.20406370813143	-1.56956373024278	-1.57884638916872	-1.58647144159385	-1.598104728449	-1.56755213932999	-1.57674499865798	-1.58510656085539	-1.70745470802464	0.626337835847419	1
Merged-chr15-89177332-4	chr15	89177225	89177425	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138749, intron 1 of 37)	intron (NM_138749, intron 1 of 37)	-3374.0	NM_001159521	140570.0	Mm.267514	NM_138749	ENSMUSG00000036606	Plxnb2	Debt|plexin-B2	plexin B2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35515797-2	chr17	35515697	35515897	+	549.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025674, intron 2 of 3)	intron (NM_025674, intron 2 of 3)	1027.0	NM_001163764	106795.0	Mm.11434	NM_025674	ENSMUSG00000050410	Tcf19	5730403J10Rik|AW495861	transcription factor 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-41290005-4	chr12	41289903	41290103	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053122, intron 4 of 6)	intron (NM_053122, intron 4 of 6)	196054.0	NM_001271708	16981.0	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-27937629-7	chr15	27937549	27937749	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081302, intron 1 of 56)	intron (NM_001081302, intron 1 of 56)	88199.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80099983-4	chr7	80099861	80100061	+	701.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173011, intron 3 of 10)	intron (NM_173011, intron 3 of 10)	15389.0	NM_173011	269951.0	Mm.246432	NM_173011	ENSMUSG00000030541	Idh2	E430004F23|IDPm|Idh-2	isocitrate dehydrogenase 2 (NADP+), mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-94582690-4	chr1	94582589	94582789	+	984.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-214753.0	NR_040473	74689.0	Mm.399187	NR_040473	ENSMUSG00000100518	4930440C22Rik	-	RIKEN cDNA 4930440C22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85456010-2	chr12	85455910	85456110	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17880.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-93552998-2	chr13	93552898	93553098	+	825.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53190.0	NM_021310	57748.0	Mm.100273	NM_021310	ENSMUSG00000021690	Jmy	-	junction-mediating and regulatory protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126213028-2	chr7	126212928	126213128	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12527.0	NM_028816	74204.0	Mm.235663	NM_028816	ENSMUSG00000000131	Xpo6	2610005L19Rik|AL022631|C230091E20Rik|R75304|Ranbp20|exp6|mKIAA0370	exportin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127167453-4	chr10	127167348	127167548	+	964.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027739, intron 3 of 9)	intron (NM_027739, intron 3 of 9)	1617.0	NM_001358578	14421.0	Mm.386762	NM_008080	ENSMUSG00000006731	B4galnt1	4933429D13Rik|Gal-NAc-T|GalNAc-T|GalNAcT|Galgt1|Ggm-2|Ggm2	beta-1,4-N-acetyl-galactosaminyl transferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21453189-4	chr9	21453098	21453298	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357721, intron 1 of 19)	intron (NM_001357721, intron 1 of 19)	28290.0	NM_001357719	13430.0	Mm.433257	NM_007871	ENSMUSG00000033335	Dnm2	Dyn2|Udnm|b2b2159Clo	dynamin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-32211044-4	chr19	32210949	32211149	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001168526)	promoter-TSS (NM_001168526)	-36.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-135680512-4	chr7	135680396	135680596	+	862.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316681, intron 16 of 17)	intron (NM_001316681, intron 16 of 17)	-28182.0	NR_015548	67765.0	Mm.445272	NR_015548	ENSMUSG00000097471	5830432E09Rik	-	RIKEN cDNA 5830432E09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-40538111-2	chr15	40538011	40538211	+	641.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10834.0	NR_046185	432945.0	Mm.321981	NR_046185	ENSMUSG00000056332	Gm16294	EG432945	predicted gene 16294	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-55413410-2	chr13	55413310	55413510	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_011392, exon 13 of 13)	exon (NM_011392, exon 13 of 13)	1822.0	NM_029303	75477.0	Mm.432537	NM_029303	ENSMUSG00000044444	Pfn3	1700012P12Rik	profilin 3	protein-coding	1.22622126548368	1.23229961438605	1.77152199974314	0.801335636489922	1.70386107867157	1.24164431616238	0.815156257183866	1.16286434438268	-0.121663902697817	0.928526430048569	0.998431161219273
Merged-chr11-79867984-2	chr11	79867884	79868084	+	728.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	94403.0	NM_144826	216987.0	Mm.274961	NM_144826	ENSMUSG00000035575	Utp6	4732497O03Rik|HCA66	UTP6 small subunit processome component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-67235238-3	chr15	67235162	67235362	+	887.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045140, intron 1 of 8)	ORR1E|LTR|ERVL-MaLR	8493.0	NR_045140	69334.0	Mm.63770	NR_045140	ENSMUSG00000102069	1700012I11Rik	-	RIKEN cDNA 1700012I11 gene	ncRNA	1.57634831204009	1.90750297677384	0.903248394435307	2.11004282993841	1.22237483930034	0.924989774223764	1.13569041337511	1.56474932632409	-1.61225950083496	0.204864323248174	0.692253703623242
Merged-chr4-155735110-2	chr4	155735010	155735210	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001101506, exon 1 of 4)	exon (NM_001101506, exon 1 of 4)	306.0	NM_001101506	381582.0	Mm.379515	NM_001101506	ENSMUSG00000084845	Tmem240	EG381582|Gm5151	transmembrane protein 240	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-110314892-2	chr10	110314792	110314992	+	687.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C|LTR|ERVK	-285758.0	NR_028438	109335.0	Mm.367727	NR_028438	ENSMUSG00000112398	9230102K24Rik	-	RIKEN cDNA 9230102K24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-14129201-3	chr16	14129107	14129307	+	850.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081154, intron 17 of 26)	intron (NM_001081154, intron 17 of 26)	30067.0	NM_001081154	223989.0	Mm.85442	NM_001081154	ENSMUSG00000060657	Marf1	4921513D23Rik|BC031575|C87306|E030019O05|Lkap|mKIAA0430	meiosis regulator and mRNA stability 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55934129-2	chr19	55934029	55934229	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001331147)	TTS (NM_001331147)	38808.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-12010538-4	chr15	12010474	12010674	+	988.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14567.0	NM_011294	20024.0	Mm.41746	NM_011294	ENSMUSG00000022205	Sub1	AI842364|P15|P9|Pc4|Rpo2tc1	SUB1 homolog (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-93303728-4	chr13	93303634	93303834	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001284189)	promoter-TSS (NM_001284189)	-23.0	NM_147176	26556.0	Mm.37533	NM_011982	ENSMUSG00000007617	Homer1	PSD-Zip45|SYN47|Ves-1|homer-1|vesl-1	homer scaffolding protein 1	protein-coding	3.55957635829415	3.75157064569059	4.62727075407322	3.42369882060534	3.51608072316374	4.23745262521997	5.16124916844426	3.70029145972939	0.517760888093292	0.331757025562852	0.832840171440179
Merged-chr7-132551505-3	chr7	132551409	132551609	+	827.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24889.0	NM_016978	18242.0	Mm.13694	NM_016978	ENSMUSG00000030934	Oat	AI194874|rhg	ornithine aminotransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31669352-4	chr14	31669254	31669454	+	868.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28297.0	NM_025295	26363.0	Mm.282679	NM_025295	ENSMUSG00000021900	Btd	-	biotinidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-111446456-4	chr10	111446358	111446558	+	967.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26769.0	NM_001358932	53605.0	Mm.290407	NM_015781	ENSMUSG00000058799	Nap1l1	AA407126|AI256722|D10Ertd68e|NAP-1	nucleosome assembly protein 1-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-58829352-4	chr7	58829279	58829479	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009728)	TTS (NM_009728)	171177.0	NM_009728	11982.0	Mm.135129	NM_009728	ENSMUSG00000025324	Atp10a	Atp10c|pfatp	ATPase, class V, type 10A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122762359-4	chr5	122762287	122762487	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199676, intron 2 of 16)	PB1D9|SINE|Alu	17023.0	NM_001199676	207565.0	Mm.289237	NM_145358	ENSMUSG00000029471	Camkk2	6330570N16Rik|AW061083|mKIAA0787	calcium/calmodulin-dependent protein kinase kinase 2, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55577604-4	chr19	55577513	55577713	+	901.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001360432)	TTS (NM_001360432)	124591.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-12430927-2	chr15	12430827	12431027	+	635.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081064, intron 5 of 23)	intron (NM_001081064, intron 5 of 23)	109431.0	NM_025673	66629.0	Mm.157655	NM_025673	ENSMUSG00000022200	Golph3	4733401N08Rik|5730410D03Rik|AW413496	golgi phosphoprotein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-19969320-3	chr14	19969206	19969406	+	722.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285908, intron 1 of 3)	intron (NM_001285908, intron 1 of 3)	7387.0	NM_001285911	14702.0	Mm.41737	NM_010315	ENSMUSG00000043004	Gng2	-	guanine nucleotide binding protein (G protein), gamma 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-9136298-3	chr10	9136206	9136406	+	873.6889039999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-250236.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	1.14564739842718	1.6094226701101	0.663843983471233	2.25644058617947	1.15763519357721	0.685357815680299	0.913781711104214	0.652327684409936	-2.60445942131221	0.0751258250647277	0.415508989684735
Merged-chr4-47248446-3	chr4	47248347	47248547	+	804.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009928, intron 4 of 39)	intron (NM_009928, intron 4 of 39)	40435.0	NM_009928	12819.0	Mm.233547	NM_009928	ENSMUSG00000028339	Col15a1	-	collagen, type XV, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167188978-8	chr2	167188907	167189107	+	739.104187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008420)	promoter-TSS (NM_008420)	-189.0	NM_008420	16500.0	Mm.205341	NM_008420	ENSMUSG00000050556	Kcnb1	Kcr1-1|Kv2.1|Shab	potassium voltage gated channel, Shab-related subfamily, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-17983511-1	chr14	17983411	17983611	+	577.0	f1_balb.idr	intron (NM_009380, intron 1 of 6)	intron (NM_009380, intron 1 of 6)	1867.0	NM_009380	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	0.514509646948676	0.563793850517593	1.62462208837258	0.535756202904558	0.891988289609886	0.567259931919476	1.97261935826598	1.10945608124869	1.17325745422191	0.466886931545387	0.923362083397688
Merged-chr15-51899388-3	chr15	51899331	51899531	+	895.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21990.0	NM_030132	78581.0	Mm.176347	NM_030132	ENSMUSG00000022313	Utp23	1700010I21Rik|AI662478|BB238373|D530033C11Rik	UTP23 small subunit processome component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-32908416-4	chr13	32908317	32908517	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	-10277.0	NM_173051	380839.0	Mm.250802	NM_173051	ENSMUSG00000079049	Serpinb1c	EIC|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 1c	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91402650-2	chr16	91402550	91402750	+	968.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010509, intron 8 of 8)	intron (NM_010509, intron 8 of 8)	-3585.0	NM_008349	16155.0	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-50157543-4	chr17	50157449	50157649	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181397, intron 2 of 9)	intron (NM_181397, intron 2 of 9)	32948.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-47621710-4	chr19	47621604	47621804	+	960.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164639, intron 9 of 17)	intron (NM_001164639, intron 9 of 17)	41685.0	NM_001164639	20874.0	Mm.281011	NM_009289	ENSMUSG00000025060	Slk	9A2|AV021402|AW411554|Etk4|SMAK|Stk2|mKIAA0204|mSLK	STE20-like kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100537061-4	chr7	100536953	100537153	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183270)	promoter-TSS (NM_183270)	-47.0	NM_183270	68185.0	Mm.228995	NM_183270	ENSMUSG00000044881	Coa4	5330414O08Rik|AI115477|AW047259|Chchd8|E2ig2	cytochrome c oxidase assembly factor 4	protein-coding	7.12828721149714	7.12341872914684	7.24391027019886	6.90316475534909	7.73810194998766	7.6139793913281	7.49651717439672	7.64239165286605	0.54677999292837	0.000298298282628513	0.00731399753741872
Merged-chr4-19570110-4	chr4	19569997	19570197	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356481)	promoter-TSS (NM_001356481)	11.0	NM_027769	70568.0	Mm.38390	NM_027769	ENSMUSG00000028228	Cpne3	5430428M23Rik|5730450C07Rik|C85108|CPN3	copine III	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-146759228-4	chr6	146759173	146759373	+	914.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172734, intron 2 of 13)	intron (NM_172734, intron 2 of 13)	34343.0	NM_172734	232533.0	Mm.322121	NM_172734	ENSMUSG00000001630	Stk38l	4930473A22Rik|Ndr2|Ndr54	serine/threonine kinase 38 like	protein-coding	3.27822467463827	5.19506583110123	4.15818984511588	4.95590403372261	3.92740414195828	3.82804369455912	2.55580624859593	2.94007979134522	-1.53755181020715	0.00662016450809181	0.0819980045782026
Merged-chr9-121215658-3	chr9	121215563	121215763	+	808.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177589, intron 17 of 36)	intron (NM_177589, intron 17 of 36)	61509.0	NM_177589	209012.0	Mm.371804	NM_177589	ENSMUSG00000040936	Ulk4	4932415A06Rik|A730098P15	unc-51-like kinase 4	protein-coding	3.55874454969159	2.28352477075342	2.77694852607445	2.80133796114249	3.0862322632181	1.54366355992374	3.82089452208102	1.94955459807417	-0.0376697299956214	0.964350886977816	0.998431161219273
Merged-chr4-101185469-4	chr4	101185369	101185569	+	939.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146145, intron 4 of 24)	intron (NM_146145, intron 4 of 24)	79813.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-45669911-4	chr14	45669804	45670004	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4B|LINE|L1	-11761.0	NM_001042719	114874.0	Mm.121918	NM_176845	ENSMUSG00000037697	Ddhd1	Mir5131|PA-PLA1	DDHD domain containing 1	protein-coding	4.80906586123004	3.84797809899846	4.9929689157706	4.11413582139085	4.65280347902268	3.56941215171494	4.3788638947627	4.82387065453699	-0.108962506379098	0.805365010093547	0.998431161219273
Merged-chr4-44071947-3	chr4	44071841	44072041	+	807.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015828, intron 1 of 11)	intron (NM_015828, intron 1 of 11)	776.0	NM_001357539	50798.0	Mm.256718	NM_015828	ENSMUSG00000028479	Gne	2310066H07Rik|DMRV|GLCNE|IBM2|NM|Uae1	glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-16373012-2	chr14	16372912	16373112	+	692.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009409, intron 1 of 35)	intron (NM_009409, intron 1 of 35)	7806.0	NM_009409	21974.0	Mm.130362	NM_009409	ENSMUSG00000017485	Top2b	D230016L12Rik|Top-2	topoisomerase (DNA) II beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-97511034-5	chr13	97510952	97511152	+	983.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28351.0	NR_110431	100039691.0	Mm.219358	NR_110430	ENSMUSG00000078952	Lncenc1	Gm11019|Gm2373|Lincenc1|Platr18|linc-Enc1	long non-coding RNA, embryonic stem cells expressed 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-6957884-2	chr17	6957772	6957972	+	628.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_147155, intron 2 of 3)	intron (NM_147155, intron 2 of 3)	3284.0	NM_147155	380608.0	Mm.371734	NM_147155	ENSMUSG00000052031	Tagap1	2610315E15Rik|AA415005|FKSG15	T cell activation GTPase activating protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118661342-2	chr9	118661225	118661425	+	859.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 6 of 27)	intron (NM_133721, intron 6 of 27)	-50367.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0.538830435225958	0.572895221260182	0.765030723998854	1.1580821499173	0.856563303616929	1.39062270996127	0.564339251143078	1.45874777882396	1.56875418688508	0.325643238488563	0.827782420413875
Merged-chr2-166553676-4	chr2	166553584	166553784	+	963.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10838.0	NR_152154	433503.0	Mm.491336	NR_152154		Gm29679	-	predicted gene, 29679	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-119929925-2	chr1	119929807	119930007	+	591.5	f0_balb.idr|f1_c57bl6.idr	intron (NM_001115074, intron 20 of 22)	intron (NM_001115074, intron 20 of 22)	-16739.0	NM_175106	66343.0	Mm.49942	NM_175106	ENSMUSG00000036975	Tmem177	2300008B03Rik	transmembrane protein 177	protein-coding	0.830556417173942	0.407577268136817	0.0355472879519373	0.581231419527455	0.0242609724537353	0.0429397759303987	0.0368798414715346	0.0316950668599648	-4.07887358204008	0.0573185151033079	1
Merged-chr12-71342488-1	chr12	71342388	71342588	+	717.333313	f0_balb.idr	Intergenic	Intergenic	32604.0	NM_001190466	59036.0	Mm.46662	NM_021532	ENSMUSG00000044548	Dact1	4921528D17Rik|AI115603|DAPPER|DAPPER1|FRODO|Frd1|Frodo1|MDpr1|MTNG3|THYEX3	dishevelled-binding antagonist of beta-catenin 1	protein-coding	2.04431853140544	1.38799383521127	2.06777797078646	2.00246123096617	3.95256223155829	2.5021252872357	3.0558409522498	2.57823848521465	2.53257444220969	0.00251895242164165	0.0398477467696619
Merged-chr3-76025728-3	chr3	76025626	76025826	+	728.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48835.0	NM_178673	213262.0	Mm.379337	NM_178673	ENSMUSG00000034098	Fstl5	9130207J01Rik	follistatin-like 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-79587483-3	chr8	79587383	79587583	+	966.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52193.0	NM_001256033	73945.0	Mm.34348	NM_001081164	ENSMUSG00000036990	Otud4	4930431L18Rik|AI449692|D8Ertd69e|mKIAA1046	OTU domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-81330767-2	chr7	81330667	81330867	+	621.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008803, intron 20 of 21)	intron (NM_008803, intron 20 of 21)	14467.0	NM_009092	20068.0	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47784604-4	chr17	47784488	47784688	+	935.7333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161723, intron 1 of 8)	intron (NM_001161723, intron 1 of 8)	-1156.0	NM_011549	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-81447891-4	chr6	81447812	81448012	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	447751.0	NR_106091	102465711.0		NR_106091	ENSMUSG00000106154	Mir7232	mmu-mir-7232	microRNA 7232	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-55597870-2	chr4	55597770	55597970	+	554.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65395.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	1.52677127661955	1.96056373602948	1.31859865385531	1.83910234775309	1.53820383685244	1.97547317554808	1.32620340240986	1.84864215186905	0.0364027923949456	0.97281946726822	0.998431161219273
Merged-chr12-84759159-2	chr12	84759059	84759259	+	761.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_023409, intron 3 of 3)	B3|SINE|B2	13953.0	NM_023409	67963.0	Mm.282556	NM_023409	ENSMUSG00000021242	Npc2	2700012J19Rik|AA408070|AU045843|HE1	NPC intracellular cholesterol transporter 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-119402565-4	chr9	119402488	119402688	+	931.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001313757, exon 1 of 11)	exon (NM_001313757, exon 1 of 11)	410.0	NM_001313757	11481.0	Mm.8940	NM_007397	ENSMUSG00000061393	Acvr2b	4930516B21Rik|ActRIIB	activin receptor IIB	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-14135111-2	chr7	14135011	14135211	+	597.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-12118.0	NM_001101586	629203.0	Mm.482066	NM_001101586	ENSMUSG00000074375	Sult2a3	EG629203|Gm6955	sulfotransferase family 2A, dehydroepiandrosterone (DHEA)-preferring, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34303586-1	chr17	34303486	34303686	+	558.0	f1_balb.idr	Intergenic	B4A|SINE|B4	-2281.0	NM_010382	14969.0	Mm.22564	NM_010382	ENSMUSG00000060586	H2-Eb1	Eb|H-2Eb|H2Eb|Ia-4|Ia4	histocompatibility 2, class II antigen E beta	protein-coding	3.50643620395726	3.42208174194939	2.30584850013962	2.4042259231481	3.6411166615589	4.20782051544439	1.58146831194622	3.1388060398659	0.650309908517352	0.399513519667097	0.885176145862419
Merged-chr4-152078495-2	chr4	152078395	152078595	+	641.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8368.0	NR_104381	269608.0	Mm.332102	NM_001004156	ENSMUSG00000039713	Plekhg5	BC023181|Syx	pleckstrin homology domain containing, family G (with RhoGef domain) member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-64046506-4	chr15	64046409	64046609	+	980.4833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360037, intron 1 of 11)	intron (NM_001360037, intron 1 of 11)	13255.0	NM_001360038	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-136706841-1	chr5	136706741	136706941	+	1000.0	f1_balb.idr	Intergenic	Intergenic	12664.0	NM_001085387	59310.0	Mm.5178	NM_021611	ENSMUSG00000005474	Myl10	1700027I08Rik|Mylc2pl|PLRLC	myosin, light chain 10, regulatory	protein-coding	0.121674729392766	-0.307950594186583	-0.314467827832284	-0.319555170913275	-0.326835872357764	0.83959114269929	-0.313023076331614	-0.318662622695643	1.9628722728145	0.428911052755427	1
Merged-chr11-3913934-4	chr11	3913836	3914036	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_153142, exon 1 of 2)	5' UTR (NM_153142, exon 1 of 2)	728.0	NM_153142	103710.0	Mm.171514	NM_153142	ENSMUSG00000048807	Slc35e4	A330108F03Rik|AI414849|AI536442	solute carrier family 35, member E4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-170897180-4	chr1	170897083	170897283	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11643.0	NM_023173	80915.0	Mm.34365	NM_023173	ENSMUSG00000026659	Dusp12	1190004O14Rik|AA027408|AW049275|ESTM36|LMW-DSP4|T-DSP4|VH1|mVH1	dual specificity phosphatase 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-35378833-2	chr5	35378733	35378933	+	567.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_152157)	TTS (NR_152157)	9643.0	NR_152157	442795.0	Mm.332328	NR_152157	ENSMUSG00000055944	E130018O15Rik	-	RIKEN cDNA E130018O15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19053682-2	chr7	19053582	19053782	+	832.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026605, intron 25 of 26)	intron (NM_026605, intron 25 of 26)	-1005.0	NM_031255	83434.0	Mm.84435	NM_031255	ENSMUSG00000040866	Rsph6a	RSP4|Rshl1	radial spoke head 6 homolog A (Chlamydomonas)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-22259723-3	chr9	22259599	22259799	+	778.200012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181419, intron 1 of 4)	CpG	196.0	NM_181419	235048.0	Mm.292381	NM_181419	ENSMUSG00000062794	Zfp599	6720416P20	zinc finger protein 599	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-74855614-4	chr14	74855457	74855657	+	893.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033439, intron 2 of 19)	RSINE1|SINE|B4	92320.0	NM_001252132	380916.0	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-71032395-2	chr2	71032295	71032495	+	734.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145524, intron 1 of 9)	intron (NM_145524, intron 1 of 9)	-14021.0	NM_001110512	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-4246754-2	chr8	4246654	4246854	+	582.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001164172, exon 12 of 12)	3' UTR (NM_001164172, exon 12 of 12)	-1460.0	NM_001195258	100044509.0	Mm.439193	NM_001195258	ENSMUSG00000089736	Tgfbr3l	Gm14378	transforming growth factor, beta receptor III-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81663929-4	chr15	81663847	81664047	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_110362)	promoter-TSS (NR_110362)	58.0	NR_110362	214669.0	Mm.280768	NM_145993	ENSMUSG00000022394	L3mbtl2	4732493N06Rik|M4mbt	L3MBTL2 polycomb repressive complex 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-49165950-4	chr16	49165863	49166063	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166210, intron 33 of 40)	intron (NM_001166210, intron 33 of 40)	108477.0	NM_001166210	667772.0	Mm.301387	NM_001166210	ENSMUSG00000092009	Myh15	EG667772	myosin, heavy chain 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19091071-2	chr7	19090971	19091171	+	723.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_032418, intron 10 of 14)	intron (NM_032418, intron 10 of 14)	-3473.0	NM_011383	20475.0	Mm.3410	NM_011383	ENSMUSG00000040841	Six5	Dmahp|MDMAHP|TrexBF	sine oculis-related homeobox 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-113430790-2	chr11	113430690	113430890	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027216, intron 5 of 9)	intron (NM_027216, intron 5 of 9)	135025.0	NM_001166503	69806.0	Mm.341021	NM_027216	ENSMUSG00000041654	Slc39a11	1810074D23Rik	solute carrier family 39 (metal ion transporter), member 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-61082926-2	chr19	61082779	61082979	+	800.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_018869, intron 11 of 15)	intron (NM_018869, intron 11 of 15)	57961.0	NR_131956	414758.0	Mm.100056	NM_001001737	ENSMUSG00000074733	Zfp950	5830428H23Rik|AU016073|BC055757|Gm34518|Zfp826|mszf84	zinc finger protein 950	protein-coding	0.789418582811359	0.39841152984244	0.389333505039215	1.40601714003104	1.00372043576216	0.400445231089472	0.391343757942755	0.725677517199151	-0.833802964136938	0.642452166800446	1
Merged-chr8-113638814-1	chr8	113638714	113638914	+	571.0	f1_c57bl6.idr	exon (NM_173015, exon 3 of 5)	exon (NM_173015, exon 3 of 5)	3015.0	NM_173015	270096.0	Mm.74689	NM_173015	ENSMUSG00000078908	Mon1b	5031407H10|5033413H12Rik	MON1 homolog B, secretory traffciking associated	protein-coding	0.270915266329631	0.849735338733839	0.00809528219809122	0.00359090121561292	0.391066231096824	0.0152321877285168	0.0093813590183047	0.176145726634363	-1.28369821212583	0.538116627883794	1
Merged-chr18-69586701-4	chr18	69586591	69586791	+	973.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 8 of 19)	intron (NM_001361128, intron 8 of 19)	240531.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-15056951-2	chr2	15056851	15057051	+	580.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029466, intron 1 of 5)	intron (NM_029466, intron 1 of 5)	1589.0	NM_029466	75869.0	Mm.174068	NM_029466	ENSMUSG00000017418	Arl5b	4930587A11Rik|AW146430|Arl8	ADP-ribosylation factor-like 5B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-128300187-2	chr7	128300087	128300287	+	592.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2056.0	NM_145590	233913.0	Mm.220880	NM_145590	ENSMUSG00000030780	BC017158	-	cDNA sequence BC017158	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-79933398-2	chr10	79933298	79933498	+	778.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001288625, intron 3 of 8)	intron (NM_001288625, intron 3 of 8)	6057.0	NM_001288625	13496.0	Mm.301282	NM_007880	ENSMUSG00000019564	Arid3a	Bright|Dri1|Dril1	AT rich interactive domain 3A (BRIGHT-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140744197-2	chr5	140744097	140744297	+	873.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173405, intron 4 of 7)	intron (NM_173405, intron 4 of 7)	20070.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-36576412-4	chr5	36576321	36576521	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113362, intron 2 of 14)	intron (NM_001113362, intron 2 of 14)	5976.0	NM_133910	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-117166991-4	chr6	117166886	117167086	+	860.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1549.0	NM_001012477	20315.0	Mm.303231	NM_013655	ENSMUSG00000061353	Cxcl12	Pbsf|Scyb12|Sdf1|Tlsf|Tpar1	chemokine (C-X-C motif) ligand 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-142439637-1	chr7	142439537	142439737	+	609.0	f1_balb.idr	intron (NR_153437, intron 4 of 5)	intron (NR_153437, intron 4 of 5)	2803.0	NM_001285861	55925.0	Mm.213002	NM_018802	ENSMUSG00000031098	Syt8	-	synaptotagmin VIII	protein-coding	0.356816245293869	0.30422845395273	0.117381961955395	0.616313628793056	0.646291838928134	0.123692722735142	0.118515825182473	0.270309354030566	-0.344384511390537	0.859224627387624	1
Merged-chr7-113512726-2	chr7	113512626	113512826	+	642.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1108.0	NM_001285831	67420.0	Mm.206919	NM_026143	ENSMUSG00000030759	Far1	2600011M19Rik|2900034E22Rik|3732409C05Rik|AI850429|Mlstd2	fatty acyl CoA reductase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36073379-4	chr1	36073274	36073474	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015818, intron 1 of 1)	MLT1A1|LTR|ERVL-MaLR	4974.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-97939043-2	chr15	97938943	97939143	+	803.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25186.0	NM_001356508	380967.0	Mm.196630	NM_201359	ENSMUSG00000052369	Tmem106c	AI046681|BC046621|D15Ertd405e	transmembrane protein 106C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4234159-2	chr19	4234059	4234259	+	575.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_027196)	TTS (NM_027196)	1744.0	NR_132280	69745.0	Mm.32518	NM_027196	ENSMUSG00000024854	Pold4	2410012M21Rik|AI463381|AW060307|Polds|p12	polymerase (DNA-directed), delta 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-14832853-2	chr9	14832753	14832953	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_018736, intron 19 of 19)	intron (NM_018736, intron 19 of 19)	-27357.0	NM_001310734	14608.0	Mm.4672	NM_010287	ENSMUSG00000031932	Gpr83	AW045253|Gir|Gpr72|RP105|RP39|RP82	G protein-coupled receptor 83	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-86903799-3	chr17	86903691	86903891	+	800.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13557.0	NM_001277980	78469.0	Mm.67234	NM_030104	ENSMUSG00000037689	Tmem247	1700090G07Rik	transmembrane protein 247	protein-coding	1.43990137403188	1.15901638011912	2.16222175106095	1.78547338461723	1.91642552006174	2.04225056293499	1.97252054019714	1.51306634777989	0.51842980729245	0.628001683127226	0.980912176761026
Merged-chr1-74227505-4	chr1	74227391	74227591	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9026.0	NM_001357387	76709.0	Mm.337038	NM_029711	ENSMUSG00000006304	Arpc2	2210023N03Rik|34kDa|p34-Arc	actin related protein 2/3 complex, subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-9104969-2	chr5	9104869	9105069	+	725.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081029, intron 2 of 4)	ID4|SINE|ID	4232.0	NM_001081029	652925.0	Mm.439954	NM_001081029	ENSMUSG00000079659	Tmem243	4930420K17Rik|E030031F02Rik	transmembrane protein 243, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-155067428-2	chr1	155067328	155067528	+	815.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_151545, intron 3 of 6)	intron (NR_151545, intron 3 of 6)	15836.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-151932369-4	chr1	151932261	151932461	+	863.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197990, intron 3 of 5)	intron (NM_197990, intron 3 of 5)	157959.0	NM_197990	69399.0	Mm.278031	NM_197990	ENSMUSG00000032666	1700025G04Rik	2610510E02Rik|2900042O04Rik	RIKEN cDNA 1700025G04 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5770798-2	chr17	5770698	5770898	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27859.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-84450503-1	chr12	84450403	84450603	+	870.0	f0_balb.idr	intron (NM_134042, intron 1 of 11)	intron (NM_134042, intron 1 of 11)	521.0	NM_134042	104776.0	Mm.247510	NM_134042	ENSMUSG00000021238	Aldh6a1	1110038I05Rik|Mmsdh	aldehyde dehydrogenase family 6, subfamily A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102290865-4	chr12	102290757	102290957	+	906.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161365, intron 1 of 9)	intron (NM_001161365, intron 1 of 9)	7216.0	NM_001161365	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-67187520-4	chr15	67187427	67187627	+	616.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10645.0	NM_009177	20442.0	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-59366348-4	chr4	59366205	59366405	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163288, intron 9 of 16)	intron (NM_001163288, intron 9 of 16)	72328.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-120986605-4	chr4	120986500	120986700	+	848.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133716, intron 1 of 9)	intron (NM_133716, intron 1 of 9)	-13278.0	NR_105982	102465614.0		NR_105982	ENSMUSG00000106436	Mir7015	mmu-mir-7015	microRNA 7015	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-33311284-4	chr12	33311249	33311449	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033436, intron 1 of 7)	L1MB5|LINE|L1	8834.0	NM_001033436	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-104103623-3	chr12	104103534	104103734	+	877.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172953, intron 3 of 4)	intron (NM_172953, intron 3 of 4)	2521.0	NM_172953	268591.0	Mm.73172	NM_172953	ENSMUSG00000041550	Serpina5	4933415L04|PAI-3|Pci	serine (or cysteine) peptidase inhibitor, clade A, member 5	protein-coding	2.76643147019575	3.20094908511189	3.0893026096522	3.25170259380628	1.14200189728651	1.29104492753423	1.24588558591258	2.08684151329117	-3.78073096583449	0.000176891967127355	0.00489020696219816
Merged-chr15-58133903-4	chr15	58133811	58134011	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027435, intron 1 of 27)	intron (NM_027435, intron 1 of 27)	1171.0	NM_027435	70472.0	Mm.221758	NM_027435	ENSMUSG00000022360	Atad2	2610509G12Rik	ATPase family, AAA domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-177176304-2	chr1	177176204	177176404	+	780.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011785, intron 1 of 12)	intron (NM_011785, intron 1 of 12)	72463.0	NM_011785	23797.0	Mm.235194	NM_011785	ENSMUSG00000019699	Akt3	AI851531|D930002M15Rik|Nmf350	thymoma viral proto-oncogene 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-42391461-4	chr6	42391367	42391567	+	805.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20C1_MM|LTR|ERVK	-8771.0	NM_001001452	387514.0	Mm.377921	NM_001001452	ENSMUSG00000046652	Tas2r143	Gm1404|Tas2r43|mt2r36	taste receptor, type 2, member 143	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-13245728-4	chr9	13245620	13245820	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033181)	promoter-TSS (NM_001033181)	21.0	NM_001033181	77532.0	Mm.459434	NM_001033181	ENSMUSG00000079083	Jrkl	C030035D04Rik|HHMJG	Jrk-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150631607-2	chr4	150631507	150631707	+	575.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355737, intron 7 of 8)	intron (NM_001355737, intron 7 of 8)	20567.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-79070138-3	chr12	79070048	79070248	+	910.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181073, intron 18 of 28)	intron (NM_181073, intron 18 of 28)	19522.0	NM_029988	110417.0	Mm.268317	NM_029988	ENSMUSG00000021120	Pigh	2210416H01Rik|A930028P05Rik	phosphatidylinositol glycan anchor biosynthesis, class H	protein-coding	1.46002043065521	1.0152127551986	0.99367503683177	1.54158221076634	2.33768867135439	1.27677688170287	1.87173994418405	2.18852023620402	2.25552755004432	0.0585480277926414	0.357424985137099
Merged-chr6-39206618-1	chr6	39206518	39206718	+	1000.0	f0_c57.idr	exon (NM_001033430, exon 1 of 20)	exon (NM_001033430, exon 1 of 20)	155.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-19007821-2	chr9	19007721	19007921	+	630.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3C|LINE|L1	19831.0	NM_001011823	258074.0	Mm.379445	NM_001011823	ENSMUSG00000095525	Olfr834	MOR153-2|MOR153-4_p	olfactory receptor 834	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69758652-4	chr11	69758565	69758765	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291068)	promoter-TSS (NM_001291068)	-32.0	NM_001291068	20020.0	Mm.16533	NM_009089	ENSMUSG00000005198	Polr2a	220kDa|Rpb1|Rpo2-1	polymerase (RNA) II (DNA directed) polypeptide A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-120539313-4	chr6	120539233	120539433	+	837.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8034.0	NM_144815	214932.0	Mm.255322	NM_144815	ENSMUSG00000058979	Hdhd5	A930002G03Rik|Cecr5	haloacid dehalogenase like hydrolase domain containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-145793423-4	chr6	145793339	145793539	+	802.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MamTip2|DNA|hAT-Tip100	-14944.0	NM_027760	71323.0	Mm.158669	NM_027760	ENSMUSG00000030259	Rassf8	5133400D11Rik|AA815821|AW123240|Hoj1|mHoj-1	Ras association (RalGDS/AF-6) domain family (N-terminal) member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-51889796-3	chr11	51889701	51889901	+	978.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-32171.0	NM_001357588	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-120837638-2	chr14	120837538	120837738	+	640.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-73556.0	NM_023579	70572.0	Mm.221452	NM_023579	ENSMUSG00000030662	Ipo5	1110011C18Rik|5730478E03Rik|AA409333|C76941|IMB3|Kpnb3|Ranbp5|imp5	importin 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-103037245-4	chr14	103037091	103037291	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3388.0	NR_045657	71264.0	Mm.399572	NR_045657	ENSMUSG00000114980	4933432I03Rik	-	RIKEN cDNA 4933432I03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-78440142-4	chr10	78440069	78440269	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172134, exon 11 of 11)	3' UTR (NM_172134, exon 11 of 11)	4988.0	NR_105873	102466762.0		NR_105873	ENSMUSG00000098279	Mir6908	Gm27827|mmu-mir-6908	microRNA 6908	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-75170747-2	chr8	75170647	75170847	+	735.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13D3|LTR|ERVK	-43197.0	NM_029182	75141.0	Mm.179267	NM_029182	ENSMUSG00000034472	Rasd2	4930526B11Rik|AU045414|Rhes|TEM-2|TEM2	RASD family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78859916-4	chr15	78859773	78859973	+	860.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4344.0	NM_025622	107753.0	Mm.390793	NM_025622	ENSMUSG00000043501	Lgals2	2200008F12Rik|AI324147	lectin, galactose-binding, soluble 2	protein-coding	1.39795879000565	1.30079064592489	1.78844157844809	1.35947043657121	0.910103828214819	1.13889748249943	1.27014234997788	1.4810524342855	-1.12839729680424	0.369292070975388	0.863136285888838
Merged-chr1-36614788-3	chr1	36614703	36614903	+	855.861084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201365, intron 6 of 9)	MTD|LTR|ERVL-MaLR	-21471.0	NM_027957	381337.0	Mm.17413	NM_027957	ENSMUSG00000046337	Fam178b	1700024G10Rik|Gm990	family with sequence similarity 178, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-95075313-4	chr10	95075226	95075426	+	934.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	70499.0	NR_131146	628062.0		NR_131146	ENSMUSG00000112481	Gm29684	-	predicted gene, 29684	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16387254-1	chr7	16387154	16387354	+	570.0	f1_c57bl6.idr	intron (NM_019748, intron 1 of 8)	intron (NM_019748, intron 1 of 8)	642.0	NM_001285892	56459.0	Mm.258530	NM_019748	ENSMUSG00000052833	Sae1	2400010M20Rik|2610044L12Rik|AL033372|AOS1|AW743391|D7Ertd177e|HSPC140|Sua1|Uble1a	SUMO1 activating enzyme subunit 1	protein-coding	0.0952839909667861	0.876689712196202	0.10942691009604	0.771833513251028	0.0966046706422743	0.117789016618904	0.110936319531269	0.563942963460611	-1.85455459478946	0.388797721712181	1
Merged-chr13-67500527-4	chr13	67500444	67500644	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001007575)	promoter-TSS (NM_001007575)	-22.0	NM_001007575	238693.0	Mm.478914	NM_001007575	ENSMUSG00000071291	Zfp58	A530094I17Rik|Mfg-1|Mfg1|Rslcan5|Zfp817	zinc finger protein 58	protein-coding	5.15350874911544	5.4093291641308	5.49565133132484	5.77123042609885	5.46121783429498	5.69098604766662	4.9859918060749	5.66482164471553	0.00494030398066586	0.986307577311153	0.998431161219273
Merged-chr4-45280353-2	chr4	45280253	45280453	+	835.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081172, intron 15 of 15)	intron (NM_001081172, intron 15 of 15)	-16815.0	NM_027266	69934.0	Mm.46761	NM_027266	ENSMUSG00000035601	Trmt10b	2610042J10Rik|Rg9mtd3|Rnmtd3	tRNA methyltransferase 10B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-149890150-3	chr4	149890000	149890200	+	916.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	64906.0	NM_029035	74646.0	Mm.30	NM_029035	ENSMUSG00000039911	Spsb1	1110014L01Rik|4930422J18Rik|AI596360|AI854583|SSB-1|SSB1	splA/ryanodine receptor domain and SOCS box containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81409561-4	chr10	81409459	81409659	+	966.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_152732)	promoter-TSS (NR_152732)	-16.0	NR_152732	102634174.0	Mm.392213	NR_152732	ENSMUSG00000085327	Gm16104	-	predicted gene 16104	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191178924-4	chr1	191178848	191179048	+	849.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007498, intron 1 of 3)	intron (NM_007498, intron 1 of 3)	4385.0	NM_007498	11910.0	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59679881-2	chr15	59679781	59679981	+	783.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31227.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-160317978-1	chr2	160317878	160318078	+	554.0	f0_balb.idr	intron (NM_001033411, intron 2 of 2)	intron (NM_001033411, intron 2 of 2)	9516.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-171982470-2	chr2	171982370	171982570	+	923.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR73|LTR|ERV1	-19671.0	NR_040509	75655.0	Mm.396203	NR_040509	ENSMUSG00000086823	1700028P15Rik	-	RIKEN cDNA 1700028P15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180303275-2	chr1	180303175	180303375	+	817.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27201.0	NM_001081175	320404.0	Mm.132535	NM_001081175	ENSMUSG00000038855	Itpkb	1110033J02Rik|E130307H12Rik	inositol 1,4,5-trisphosphate 3-kinase B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80575725-2	chr10	80575625	80575825	+	581.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_078477, intron 1 of 1)	intron (NM_078477, intron 1 of 1)	1571.0	NM_078477	118445.0	Mm.41513	NM_078477	ENSMUSG00000035397	Klf16	AI843742|BTEB4|DRRF	Kruppel-like factor 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19219677-1	chr7	19219577	19219777	+	709.0	f1_balb.idr	intron (NM_175668, intron 1 of 1)	B1_Mus1|SINE|Alu	7139.0	NM_175668	319197.0	Mm.135984	NM_175668	ENSMUSG00000044317	Gpr4	-	G protein-coupled receptor 4	protein-coding	-0.838354004625293	-0.829045532231904	-0.83287544315711	-0.834942405164556	-0.476445790202573	-0.642105685927108	-0.832282936247967	-0.543041131766859	2.95820913597882	0.290259887020484	1
Merged-chr14-63146447-3	chr14	63146350	63146550	+	912.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_007798)	TTS (NM_007798)	23988.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-85333990-4	chr6	85333872	85334072	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178639)	promoter-TSS (NM_178639)	-550.0	NM_178639	94282.0	Mm.121485	NM_178639	ENSMUSG00000033720	Sfxn5	C230001H08Rik	sideroflexin 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31408830-1	chr14	31408730	31408930	+	577.0	f0_balb.idr	intron (NM_001347585, intron 2 of 7)	intron (NM_001347585, intron 2 of 7)	8847.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-11479923-2	chr8	11479823	11480023	+	622.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_126558, exon 2 of 2)	non-coding (NR_126558, exon 2 of 2)	-1424.0	NM_011227	19332.0	Mm.37632	NM_011227	ENSMUSG00000031504	Rab20	AA536966|D8Ertd350e	RAB20, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-59984173-3	chr7	59984047	59984247	+	701.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_146211, intron 13 of 171)	Lx7|LINE|L1	-5291.0	NR_028529	100217429.0		NR_028529		Snord64	MBII-13	small nucleolar RNA, C/D box 64	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-128834626-4	chr6	128834544	128834744	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB3|LINE|L1	-8329.0	NM_030599	80782.0	Mm.6180	NM_030599	ENSMUSG00000079298	Klrb1b	Klrb1d|Ly55b|Ly55d|NKR-P1B|NKR-P1D|Nkrp1-b|Nkrp1b|Nkrp1d|ly-55b|ly-55d	killer cell lectin-like receptor subfamily B member 1B	protein-coding	4.68926860158377	4.65833581258557	4.56198503406399	5.26943949390671	5.2066789418636	5.69709184412066	5.1508490124985	4.70000444946353	0.476040643428836	0.16762528418299	0.633638361571367
Merged-chr9-24770563-3	chr9	24770472	24770672	+	810.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194263, intron 2 of 7)	intron (NM_194263, intron 2 of 7)	3731.0	NM_020496	57246.0	Mm.31452	NM_020496	ENSMUSG00000031965	Tbx20	9430010M06Rik|AL022859|Tbx12	T-box 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-164372840-1	chr2	164372740	164372940	+	683.0	f0_balb.idr	Intergenic	Intergenic	-16333.0	NM_011414	20568.0	Mm.371583	NM_011414	ENSMUSG00000017002	Slpi	ALP	secretory leukocyte peptidase inhibitor	protein-coding	0.257822929175661	0.783476555932553	0.95805112894816	0.266893559903082	0.410620209267118	0.793359449914009	0.273888589791726	0.439711461311085	-0.702086192086234	0.700631853837604	1
Merged-chr10-121374381-4	chr10	121374271	121374471	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029364, exon 3 of 14)	exon (NM_029364, exon 3 of 14)	9281.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-155221291-2	chr4	155221191	155221391	+	615.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011385, intron 1 of 6)	intron (NM_011385, intron 1 of 6)	1244.0	NM_011385	20481.0	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	-1.7024385483431	-1.81249224917775	-1.82134771053534	-1.82862185015837	-1.70038292649591	-1.81057323376012	-1.81934302819017	-1.82731978264371	0.0376840119903864	0.991491645451152	1
Merged-chr11-60953955-4	chr11	60953852	60954052	+	907.2374880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21895.0	NM_008928	26397.0	Mm.18494	NM_008928	ENSMUSG00000018932	Map2k3	AW212142|MEK3|MKK3|Prkmk3|mMKK3b	mitogen-activated protein kinase kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-137560608-4	chr6	137560503	137560703	+	916.1875	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271588, intron 1 of 20)	intron (NM_001271588, intron 1 of 20)	10406.0	NM_001271595	13860.0	Mm.235346	NM_007945	ENSMUSG00000015766	Eps8	AW261790	epidermal growth factor receptor pathway substrate 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-117119042-2	chr2	117118942	117119142	+	758.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2029.0	NM_001277256	114715.0	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24721721-2	chr17	24721615	24721815	+	953.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_002897)	TTS (NR_002897)	926.0	NR_002897	104366.0	Mm.157452	NR_002897	ENSMUSG00000077709	Snora64	MBI-29|Rnu64	small nucleolar RNA, H/ACA box 64	snoRNA	1.22464052988987	1.53961998744111	0.666027236481579	0.654830335505134	1.60650562984162	1.66603072513047	0.669192653436997	0.656800637096319	0.615095213122853	0.698790573130442	0.998284579433352
Merged-chr5-88959792-2	chr5	88959692	88959892	+	651.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359211, intron 3 of 26)	intron (NM_001359211, intron 3 of 26)	-68174.0	NM_001359212	54403.0	Mm.41044	NM_018760	ENSMUSG00000060961	Slc4a4	AI835705|NBC|NBC1	solute carrier family 4 (anion exchanger), member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83000982-1	chr6	83000882	83001082	+	669.0	f1_c57bl6.idr	intron (NM_033079, intron 4 of 9)	ERVB7_1-LTR_MM|LTR|ERVK	32489.0	NM_010070	13448.0	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	-1.50811478453619	-0.99851579554048	-1.48484165847197	-1.49312904261012	-1.50577282675516	-1.47256636097272	-1.48255773576353	-1.49164560481169	-2.24133836997777	0.518237887813808	1
Merged-chr5-139402808-2	chr5	139402708	139402908	+	616.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028469, intron 2 of 4)	intron (NM_028469, intron 2 of 4)	-3579.0	NM_177000	319772.0	Mm.440271	NM_177000	ENSMUSG00000044092	C130050O18Rik	-	RIKEN cDNA C130050O18 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126789168-4	chr8	126789066	126789266	+	758.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59854.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	1.32659992225069	1.13871857933519	1.8112868853429	0.865411380935497	1.45988312097668	0.900763399047376	2.17610348182689	1.41049836687948	0.788226857936402	0.54088331766636	0.954866069207078
Merged-chr2-128738876-2	chr2	128738776	128738976	+	955.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 4 of 18)	intron (NM_008587, intron 4 of 18)	39961.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-5195335-3	chr16	5195226	5195426	+	643.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_013796)	TTS (NM_013796)	8686.0	NM_013796	27426.0	Mm.215641	NM_013796	ENSMUSG00000023143	Nagpa	AI596180|UCE	N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-29735791-4	chr16	29735713	29735913	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	156479.0	NM_001199177	74143.0	Mm.274285	NM_133752	ENSMUSG00000038084	Opa1	1200011N24Rik|AI225888|AI847218|lilr3|mKIAA0567	OPA1, mitochondrial dynamin like GTPase	protein-coding	0.968912886563407	1.35425447479381	0.892978177856613	1.01914348319566	0.843637497136402	1.09477823735541	1.4184811117125	0.876265930436894	0.0527770031294989	0.968400161285987	0.998431161219273
Merged-chr17-32404970-2	chr17	32404870	32405070	+	998.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_029458)	TTS (NR_029458)	-1388.0	NR_153797	320484.0	Mm.122284	NM_178785	ENSMUSG00000052142	Rasal3	A430107D22Rik	RAS protein activator like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-12268283-3	chr12	12268166	12268366	+	727.133362	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146119, intron 1 of 11)	intron (NM_001146119, intron 1 of 11)	6127.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-89452611-2	chr1	89452511	89452711	+	640.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2200.0	NM_178119	347722.0	Mm.291135	NM_178119	ENSMUSG00000055013	Agap1	Centg2|Ggap1|R75364|mKIAA1099	ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-123377930-4	chr7	123377822	123378022	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025304)	promoter-TSS (NM_025304)	-60.0	NM_025304	30949.0	Mm.260527	NM_025304	ENSMUSG00000030763	Lcmt1	AL033290|LCMT-1|Lcmt	leucine carboxyl methyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-68955119-2	chr11	68955019	68955219	+	742.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_177566, intron 1 of 15)	intron (NM_177566, intron 1 of 15)	1739.0	NM_177566	442801.0	Mm.376147	NM_177566	ENSMUSG00000052921	Arhgef15	D130071N09|D530030K12Rik|E5	Rho guanine nucleotide exchange factor (GEF) 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3744321-4	chr4	3744232	3744432	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 4 of 12)	intron (NM_001111096, intron 4 of 12)	29368.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-14476250-2	chr16	14476150	14476350	+	771.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17A2|LTR|ERVK	-86067.0	NR_033556	545280.0	Mm.123679	NR_033556		A630010A05Rik	-	RIKEN cDNA A630010A05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-4158360-3	chr12	4158249	4158449	+	847.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159537, intron 2 of 21)	intron (NM_001159537, intron 2 of 21)	24196.0	NM_138305	104111.0	Mm.489807	NM_138305	ENSMUSG00000020654	Adcy3	AC3|mKIAA0511	adenylate cyclase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133806018-4	chr4	133805926	133806126	+	900.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	-52415.0	NM_001080819	93760.0	Mm.22478	NM_001080819	ENSMUSG00000007880	Arid1a	1110030E03Rik|BAF250a|Osa1|Smarcf1	AT rich interactive domain 1A (SWI-like)	protein-coding	1.99205144411125	1.06314237652189	1.03672784263965	1.76711665447466	2.18303219568879	1.90925401130409	1.04264865137749	2.71752630454982	1.47517682453305	0.220720421192885	0.711835678575402
Merged-chr13-48540648-1	chr13	48540548	48540748	+	575.0	f0_balb.idr	Intergenic	Intergenic	-2376.0	NR_029725	387244.0		NR_029725	ENSMUSG00000065421	Mirlet7a-1	Let-7a|Mirnlet7a|Mirnlet7a-1|let-7a-1	microRNA let7a-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-69117302-3	chr3	69117171	69117371	+	622.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008467, intron 1 of 16)	intron (NM_008467, intron 1 of 16)	9821.0	NM_008467	16649.0	Mm.30601	NM_008467	ENSMUSG00000027782	Kpna4	1110058D08Rik|IPOA3	karyopherin (importin) alpha 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-43979831-6	chr16	43979692	43979892	+	955.634277	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001007460)	promoter-TSS (NM_001007460)	-742.0	NM_001007460	332175.0	Mm.327852	NM_001007460	ENSMUSG00000036304	Zdhhc23	Gm1751|Gm779|nidd	zinc finger, DHHC domain containing 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-58181007-4	chr2	58180896	58181096	+	787.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17022.0	NR_045895	100042926.0	Mm.446515	NR_045895	ENSMUSG00000086862	Gm13546	-	predicted gene 13546	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-106368521-4	chr9	106368397	106368597	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153459)	promoter-TSS (NM_153459)	-135.0	NM_153459	235584.0	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-108454827-4	chr4	108454716	108454916	+	900.05835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4610.0	NM_175472	230594.0	Mm.25181	NM_175472	ENSMUSG00000034610	Zcchc11	6030404K05Rik|9230115F04Rik|PPAPD3|mKIAA0191	zinc finger, CCHC domain containing 11	protein-coding	2.92651411498872	1.61279053538182	3.43086607841116	3.76043818868815	3.03623879146554	1.62593866092076	3.45761139002604	3.778761329152	0.0637131635029441	0.938280994959177	0.998431161219273
Merged-chr9-65587089-4	chr9	65586986	65587186	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357526)	promoter-TSS (NM_001357526)	-74.0	NR_151702	208084.0	Mm.211032	NM_172453	ENSMUSG00000041064	Pif1	4631410M14|AI449441	PIF1 5'-to-3' DNA helicase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-84712855-2	chr12	84712755	84712955	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14048.0	NM_001033334	627191.0	Mm.152484	NM_001033334	ENSMUSG00000071234	Syndig1l	DSPC1|Gm261|SynDIG2|Tmem90a	synapse differentiation inducing 1 like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128396983-2	chr2	128396883	128397083	+	600.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_028591, intron 1 of 1)	intron (NR_028591, intron 1 of 1)	32368.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-105989014-4	chr1	105988901	105989101	+	742.075012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151625, intron 2 of 2)	intron (NR_151625, intron 2 of 2)	1281.0	NR_151625	635504.0	Mm.359717	NR_151625		Gm7160	EG635504	predicted gene 7160	ncRNA	0.240896412217069	0.460772986658668	0.722018907385428	1.0663145603347	0.242233149804085	0.465969522809385	0.256776304599483	0.567723457637944	-1.81966365897191	0.326675275533286	1
Merged-chr2-37757193-3	chr2	37757076	37757276	+	837.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19073.0	NM_001163566	241324.0	Mm.392369	NM_001163566	ENSMUSG00000035403	Crb2	5930402A21|BC043114	crumbs family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-110266025-4	chr7	110265925	110266125	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009302, intron 5 of 11)	intron (NM_009302, intron 5 of 11)	44322.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-27186301-3	chr3	27186209	27186409	+	611.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 1 of 4)	intron (NM_178772, intron 1 of 4)	3305.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-103316125-2	chr15	103316025	103316225	+	807.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356627, intron 4 of 7)	intron (NM_001356627, intron 4 of 7)	-5687.0	NM_030720	80910.0	Mm.160369	NM_030720	ENSMUSG00000063234	Gpr84	EX33	G protein-coupled receptor 84	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-24427722-4	chr8	24427616	24427816	+	968.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11230.0	NM_026931	69068.0	Mm.25775	NM_026931	ENSMUSG00000056313	Tcim	1110065B09Rik|1810011O10Rik|AW121743|AW321058	transcriptional and immune response regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123388651-2	chr5	123388551	123388751	+	730.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-6147.0	NM_133917	208104.0	Mm.83277	NM_133917	ENSMUSG00000038342	Mlxip	AW228700|Mir|bHLHe36	MLX interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25720093-4	chr7	25719995	25720195	+	739.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1042.0	NM_028771	52132.0	Mm.278798	NM_028771	ENSMUSG00000002608	Ccdc97	1200014H14Rik|2810446P04Rik|AA545218|D7Ertd462e	coiled-coil domain containing 97	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-45232495-3	chr2	45232398	45232598	+	611.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-115056.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-96156855-2	chr6	96156755	96156955	+	680.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_182808, intron 2 of 4)	Lx8|LINE|L1	9350.0	NR_003643	78482.0	Mm.391486	NM_030107	ENSMUSG00000072878	1700123L14Rik	-	nucleoporin 50 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-21983030-2	chr14	21982930	21983130	+	789.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_145459)	TTS (NM_145459)	6571.0	NM_145459	218820.0	Mm.292401	NM_145459	ENSMUSG00000039081	Zfp503	AI181838|B830002A16Rik|Nolz-1|Nolz1|Znf503	zinc finger protein 503	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-34508226-2	chr18	34508126	34508326	+	594.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1403.0	NM_146084	225358.0	Mm.226899	NM_146084	ENSMUSG00000036501	Fam13b	2610024E20Rik|AW060714|AW546153	family with sequence similarity 13, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-12896615-2	chr3	12896515	12896715	+	641.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-575040.0	NM_001357033	76897.0	Mm.422625	NM_178631	ENSMUSG00000039717	Ralyl	0710005M24Rik	RALY RNA binding protein-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-13199413-3	chr10	13199264	13199464	+	851.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-6227.0	NM_181470	353258.0	Mm.117581	NM_181470	ENSMUSG00000019814	Ltv1	2610020N02Rik	LTV1 ribosome biogenesis factor	protein-coding	3.89707761227593	3.07913749817942	1.55179397193099	2.88384902141086	2.75164368513391	3.5539768035769	2.09409366673961	3.53275875034712	0.0077558009795733	0.992207079891726	0.998431161219273
Merged-chr4-11082204-2	chr4	11082104	11082304	+	657.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-5999.0	NM_001085493	76947.0	Mm.275265	NM_001085493	ENSMUSG00000050323	Ndufaf6	2310030N02Rik	NADH dehydrogenase (ubiquinone) complex I, assembly factor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-40978052-3	chr4	40977951	40978151	+	942.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290448, intron 2 of 15)	intron (NM_001290448, intron 2 of 15)	7108.0	NM_023739	74164.0	Mm.247456	NM_023739	ENSMUSG00000028423	Nfx1	1300017N15Rik|3000003M19Rik|NFX.1|TEG-42|Tex42	nuclear transcription factor, X-box binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91866016-4	chr16	91865866	91866066	+	795.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110275, intron 26 of 28)	intron (NM_001110275, intron 26 of 28)	65664.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-38377937-2	chr16	38377837	38378037	+	581.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001081984, exon 4 of 4)	3' UTR (NM_001081984, exon 4 of 4)	15747.0	NM_022318	64082.0	Mm.390856	NM_022318	ENSMUSG00000022803	Popdc2	AV006127|Pop2	popeye domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-51811530-2	chr11	51811430	51811630	+	599.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	45951.0	NM_199299	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114204392-1	chr11	114204292	114204492	+	545.0	f1_balb.idr	Intergenic	RSINE1|SINE|B4	6134.0	NR_045930	73536.0	Mm.54275	NR_045930	ENSMUSG00000078600	1700092K14Rik	-	RIKEN cDNA 1700092K14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-16060255-1	chr8	16060155	16060355	+	548.0	f1_c57bl6.idr	intron (NM_053171, intron 36 of 69)	intron (NM_053171, intron 36 of 69)	108583.0	NR_037214	100526464.0		NR_037214	ENSMUSG00000093142	Mir3106	mir-3106|mmu-mir-3106	microRNA 3106	ncRNA	-0.253388815801523	-0.712469485000288	-0.71573975734073	-0.718258518408392	-0.721811212932892	-0.211908210509453	-0.715019015619025	-0.71781877470079	0.146978929795768	0.96038749539526	1
Merged-chr4-145229307-4	chr4	145229217	145229417	+	969.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011610, intron 1 of 9)	intron (NM_011610, intron 1 of 9)	17553.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-32164878-2	chr14	32164778	32164978	+	807.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001284319)	promoter-TSS (NM_001284319)	-708.0	NM_001284319	27057.0	Mm.371598	NM_019744	ENSMUSG00000056234	Ncoa4	ARA70|Rfg	nuclear receptor coactivator 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-101608828-4	chr14	101608708	101608908	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001081278, exon 1 of 19)	5' UTR (NM_001081278, exon 1 of 19)	383.0	NM_001081278	210789.0	Mm.320639	NM_173380	ENSMUSG00000033083	Tbc1d4	5930406J04Rik|A930035N22|AV295684|As160	TBC1 domain family, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-119357082-2	chr2	119356968	119357168	+	943.25	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	5826.0	NM_026929	69065.0	Mm.35083	NM_026929	ENSMUSG00000027313	Chac1	1810008K03Rik	ChaC, cation transport regulator 1	protein-coding	5.0344672603856	5.61558379508391	4.66649465172786	5.44265904585548	3.73530193063924	1.77996045778319	1.99031504854963	2.14792644494179	-3.47349364410276	0.000314073829500594	0.0076280522395711
Merged-chr10-41968371-4	chr10	41968260	41968460	+	996.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034858, intron 8 of 17)	intron (NM_001034858, intron 8 of 17)	50022.0	NM_001034858	213402.0	Mm.211320	NM_001034858	ENSMUSG00000071324	Armc2	2610018I05Rik	armadillo repeat containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34122644-4	chr17	34122510	34122710	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010386)	promoter-TSS (NM_010386)	-3.0	NM_001204973	14312.0	Mm.3444	NM_010238	ENSMUSG00000024335	Brd2	AW228947|D17H6S113E|Frg-1|Fsrg-1|Fsrg1|Nat|Ring3|Rnf3|mKIAA4005	bromodomain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-30885429-1	chr5	30885329	30885529	+	541.0	f1_c57bl6.idr	Intergenic	Intergenic	-3423.0	NM_174849	231093.0	Mm.440364	NM_174849	ENSMUSG00000029165	Agbl5	9430057O19Rik|CCP5	ATP/GTP binding protein-like 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-75593936-4	chr16	75593792	75593992	+	908.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198302, intron 1 of 4)	intron (NM_198302, intron 1 of 4)	1001.0	NM_198302	224344.0	Mm.273214	NM_198302	ENSMUSG00000032940	Rbm11	A330018F01	RNA binding motif protein 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-32562440-2	chr4	32562340	32562540	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001109661, exon 3 of 5)	exon (NM_001109661, exon 3 of 5)	9222.0	NR_026843	414068.0	Mm.389550	NR_026843	ENSMUSG00000086150	Bach2os	-	BTB and CNC homology 2, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98338569-2	chr11	98338469	98338669	+	594.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-8924.0	NM_010895	18013.0	Mm.4814	NM_010895	ENSMUSG00000038255	Neurod2	Ndrf|bHLHa1	neurogenic differentiation 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53027326-6	chr4	53027234	53027434	+	775.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	15454.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-93917826-2	chr15	93917726	93917926	+	828.3000490000001	f1_balb.idr|f1_c57bl6.idr	intron (NR_045737, intron 2 of 3)	intron (NR_045737, intron 2 of 3)	9285.0	NR_045737	77248.0	Mm.410768	NR_045737	ENSMUSG00000116360	9430014N10Rik	-	RIKEN cDNA 9430014N10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-56523765-3	chr18	56523662	56523862	+	922.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14377.0	NR_106160	102465790.0		NR_106160	ENSMUSG00000099196	Mir1258	Gm27371|mmu-mir-1258	microRNA 1258	ncRNA	-0.123177926906052	-0.253127247667734	0.414558968656902	0.273708412220454	-0.266263616133214	-0.25209228881195	-0.256705602625904	-0.26064087691619	-3.72776056978205	0.114744017808385	1
Merged-chr2-116923412-3	chr2	116923308	116923508	+	919.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23256.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-27611348-4	chr3	27611249	27611449	+	996.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356953, intron 4 of 26)	intron (NM_001356953, intron 4 of 26)	-26354.0	NR_037275	100526525.0		NR_037275	ENSMUSG00000092695	Mir3092	mir-3092|mmu-mir-3092	microRNA 3092	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126198376-2	chr7	126198276	126198476	+	732.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028816, intron 1 of 23)	L1MB2|LINE|L1	2125.0	NM_001311143	74204.0	Mm.235663	NM_028816	ENSMUSG00000000131	Xpo6	2610005L19Rik|AL022631|C230091E20Rik|R75304|Ranbp20|exp6|mKIAA0370	exportin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-86173874-3	chr15	86173778	86173978	+	829.866638	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145475, intron 1 of 12)	L1MDa|LINE|L1	-11850.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-74804028-3	chr17	74803931	74804131	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152817, intron 13 of 19)	MER20|DNA|hAT-Charlie	86281.0	NM_152817	74196.0	Mm.209503	NM_152817	ENSMUSG00000024078	Ttc27	2610511O17Rik	tetratricopeptide repeat domain 27	protein-coding	6.00071908665809	6.24614496212446	5.57426874302893	5.44300880664409	2.63641447111082	3.22776528460147	3.77923486685425	1.7371478165241	-3.58273878054346	4.55133089955258e-15	2.64226781287896e-12
Merged-chr15-67300723-4	chr15	67300590	67300790	+	908.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045140, intron 5 of 8)	L1M4|LINE|L1	73921.0	NR_045140	69334.0	Mm.63770	NR_045140	ENSMUSG00000102069	1700012I11Rik	-	RIKEN cDNA 1700012I11 gene	ncRNA	0.7103073069528	-0.212995262945769	-0.218140838152611	-0.0497525149078687	-0.0741101951006194	-0.211837278220586	-0.0278559375211598	-0.221424639749366	-2.19105724967196	0.331237405961818	1
Merged-chr14-73245010-2	chr14	73244910	73245110	+	693.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009029, intron 17 of 26)	intron (NM_009029, intron 17 of 26)	7119.0	NM_175116	67168.0	Mm.390681	NM_175116	ENSMUSG00000033446	Lpar6	2610302I02Rik|P2ry5|P2y5	lysophosphatidic acid receptor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-23980706-4	chr17	23980603	23980803	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(A)n|Simple_repeat|Simple_repeat	-5473.0	NM_013921	30943.0	Mm.142568	NM_013921	ENSMUSG00000024124	Prss30	2010015P21Rik|Disp|Disp1|Tmprss8	protease, serine 30	protein-coding	4.91383155362317	5.22534300474136	5.36704983324517	5.72639537862998	5.30589894871585	4.77055908894645	5.17698130672369	4.76675187398402	-0.357684975878671	0.262376370841366	0.763704924152041
Merged-chr2-102765055-4	chr2	102764958	102765158	+	861.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077514, intron 8 of 10)	intron (NM_001077514, intron 8 of 10)	-18298.0	NR_153853	102637542.0	Mm.371582	NR_153852		Gm13872	-	predicted gene 13872	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-88953357-4	chr9	88953258	88953458	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3562.0	NM_009742	12044.0	Mm.425593	NM_009742	ENSMUSG00000102037	Bcl2a1a	A1|BB218357|Bcl2a1|Bfl-1|Hbpa1	B cell leukemia/lymphoma 2 related protein A1a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65547922-4	chr9	65547820	65548020	+	840.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32167.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-35199348-4	chr9	35199295	35199495	+	961.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177845, intron 1 of 6)	intron (NM_001177845, intron 1 of 6)	510.0	NM_001177847	117149.0	Mm.23987	NM_054096	ENSMUSG00000032041	Tirap	AA407980|C130027E04Rik|Mal|Tlr4ap|Wyatt	toll-interleukin 1 receptor (TIR) domain-containing adaptor protein	protein-coding	1.12078408024853	1.66762953504993	1.79719132534858	0.820441092445013	1.56801739913236	0.848604661594583	1.04607114344947	1.32622349253536	-0.691423390877126	0.607853676126515	0.974576632476413
Merged-chr7-28179412-4	chr7	28179314	28179514	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010092)	promoter-TSS (NM_010092)	-69.0	NM_001037957	13549.0	Mm.57249	NM_010092	ENSMUSG00000002409	Dyrk1b	Mirk	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-50471419-4	chr17	50471317	50471517	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38130.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-105479992-3	chr9	105479921	105480121	+	816.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253831, intron 1 of 26)	L1M3|LINE|L1	15112.0	NM_175025	235574.0	Mm.326247	NM_175025	ENSMUSG00000032570	Atp2c1	1700121J11Rik|ATP2C1A|AW061228|BCPM|D930003G21Rik|HHD|SPCA|pmr1	ATPase, Ca++-sequestering	protein-coding	0.867653799478577	0.426842420171718	0.592160100141769	0.935149143430955	0.549631479392503	0.916379869455677	0.745261356845846	0.415579263347024	-0.324563073857271	0.843653199531181	1
Merged-chr1-171281259-4	chr1	171281174	171281374	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008911)	promoter-TSS (NM_008911)	-88.0	NM_008911	19044.0	Mm.266888	NM_008911	ENSMUSG00000062729	Ppox	Ppo	protoporphyrinogen oxidase	protein-coding	4.75717176366918	5.15621136021989	5.04007045223294	5.37195168895014	5.07000963873285	4.63169756852407	5.11103536518796	4.60709348782974	-0.258451100914845	0.431068243620324	0.904679012727573
Merged-chr6-97342621-2	chr6	97342521	97342721	+	657.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 8 of 23)	ID_B1|SINE|B4	-89841.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-20304492-2	chr11	20304392	20304592	+	744.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_018861, exon 8 of 8)	exon (NM_018861, exon 8 of 8)	28221.0	NM_018861	55963.0	Mm.6379	NM_018861	ENSMUSG00000020142	Slc1a4	ASCT-1|ASCT1|AW045657|SATT	solute carrier family 1 (glutamate/neutral amino acid transporter), member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33900828-2	chr16	33900728	33900928	+	578.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 7 of 14)	intron (NM_001145884, intron 7 of 14)	66210.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-87626553-4	chr1	87626450	87626650	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110192, intron 1 of 26)	intron (NM_001110192, intron 1 of 26)	6238.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-79812994-4	chr12	79812873	79813073	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 10 of 10)	intron (NM_009014, intron 10 of 10)	111760.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-90043792-2	chr9	90043692	90043892	+	671.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPEY3-int|LTR|ERVK	-10475.0	NM_007801	13036.0	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-61599992-2	chr2	61599892	61600092	+	764.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_149323, intron 2 of 9)	intron (NR_149323, intron 2 of 9)	6895.0	NR_149323	21353.0	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-5054760-1	chr7	5054660	5054860	+	545.0	f1_balb.idr	Intergenic	Intergenic	-1392.0	NM_001290429	232821.0	Mm.482157	NM_146178	ENSMUSG00000035228	Ccdc106	BC018462	coiled-coil domain containing 106	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-47189403-4	chr14	47189306	47189506	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008102)	promoter-TSS (NM_008102)	7.0	NM_008102	14528.0	Mm.10651	NM_008102	ENSMUSG00000037580	Gch1	GTP-CH|GTP-CH-I|GTPCH|Gch	GTP cyclohydrolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-88058095-4	chr17	88057999	88058199	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081034, intron 1 of 22)	PB1D9|SINE|Alu	6833.0	NM_001348248	225055.0	Mm.386857	NM_001081034	ENSMUSG00000005371	Fbxo11	C80048|Jf	F-box protein 11	protein-coding	2.7308259935841	2.81312765909595	3.07336084169779	3.66048269523656	3.51196335890884	2.83422187468561	2.98905851769557	3.67802503515312	0.30054306587108	0.630125472806441	0.981387068864916
Merged-chr1-165736281-4	chr1	165736161	165736361	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27497.0	NR_149310	433375.0	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-30007076-3	chr17	30006979	30007179	+	939.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151443, intron 1 of 4)	intron (NR_151443, intron 1 of 4)	2040.0	NM_001356265	21769.0	Mm.220972	NM_148926	ENSMUSG00000044477	Zfand3	AW539211|TEG-27|Tex27	zinc finger, AN1-type domain 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-84735309-4	chr16	84735181	84735381	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017404)	promoter-TSS (NM_017404)	21.0	NM_017404	27393.0	Mm.103655	NM_017404	ENSMUSG00000022889	Mrpl39	C21orf8|MRP-L5|ORF22|Rpml5	mitochondrial ribosomal protein L39	protein-coding	7.52261129544554	7.57812329705146	7.58633611592159	7.05757765299784	7.13389235321298	7.36615207411644	7.07072145558828	6.57919303339538	-0.407706475975131	0.0311334079473923	0.243457282903795
Merged-chr16-35765097-3	chr16	35765007	35765207	+	996.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153550, intron 1 of 8)	MTD|LTR|ERVL-MaLR	4249.0	NM_153550	224132.0	Mm.24094	NM_153550	ENSMUSG00000022848	Dirc2	RCC4	disrupted in renal carcinoma 2 (human)	protein-coding	2.78698340867244	3.02604339317537	2.77894320038123	3.16459331464805	3.9253954257425	3.2951547457485	3.6350056110687	4.59670579446061	1.56108950675555	0.00632017270844853	0.0793748417543254
Merged-chr11-95520912-4	chr11	95520814	95521014	+	957.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6349.0	NM_130858	104079.0	Mm.22970	NM_130858	ENSMUSG00000046719	Nxph3	-	neurexophilin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-118490074-2	chr7	118489974	118490174	+	564.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_001033380, exon 1 of 1)	exon (NM_001033380, exon 1 of 1)	1901.0	NM_001033380	319622.0	Mm.323386	NM_001033380	ENSMUSG00000095115	Itpripl2	C130081G24|E030018N11Rik	inositol 1,4,5-triphosphate receptor interacting protein-like 2	protein-coding	1.34811230579348	1.98651501983935	1.4643173108794	0.9088300766205	1.84200151851675	1.36728042809213	1.47630374712742	0.91103736198537	-0.145950252379981	0.90927634313174	0.998431161219273
Merged-chr16-16584836-4	chr16	16584741	16584941	+	861.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301817, intron 1 of 16)	intron (NM_001301817, intron 1 of 16)	15137.0	NM_001301817	224014.0	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-44631773-4	chr10	44631669	44631869	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-173021.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-19165361-2	chr3	19165261	19165461	+	739.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-2266.0	NM_001357689	74252.0	Mm.200383	NM_028840	ENSMUSG00000027599	Armc1	2310016N05Rik|2900046P06Rik|3110009G21Rik|AA409258|AW048872|Arcp|C330014L16Rik	armadillo repeat containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-34282261-3	chr13	34282159	34282359	+	935.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033167, intron 3 of 10)	intron (NM_001033167, intron 3 of 10)	62923.0	NM_001033167	73102.0	Mm.23932	NM_001033167	ENSMUSG00000038267	Slc22a23	3110004L20Rik	solute carrier family 22, member 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-19064321-2	chr10	19064221	19064421	+	601.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48911.0	NM_009397	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-43709851-4	chr19	43709738	43709938	+	957.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053103, intron 5 of 12)	intron (NM_053103, intron 5 of 12)	20149.0	NM_053103	93685.0	Mm.248237	NM_053103	ENSMUSG00000025192	Entpd7	1810012B13Rik|1810020C02Rik|2810003F23Rik|LALP1|Lysal2	ectonucleoside triphosphate diphosphohydrolase 7	protein-coding	3.67384945223845	3.52046134562918	4.01364475583929	3.45300417049465	3.23403758834254	1.97817517208326	1.61274407686242	3.06082665966822	-1.65695944033268	0.0166768283780234	0.156482210802548
Merged-chr17-78916543-4	chr17	78916442	78916642	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177402)	promoter-TSS (NM_001177402)	43.0	NM_001177402	68554.0	Mm.391820	NM_001177402	ENSMUSG00000062691	Cebpzos	1110001A16Rik	CCAAT/enhancer binding protein (C/EBP), zeta, opposite strand	protein-coding	5.67705025058447	5.72885517894131	6.06997753553053	5.04154920849618	5.33615013385588	4.68660949304995	5.13479710152873	5.3784045859303	-0.57996346461292	0.060488786181213	0.363651214506749
Merged-chr1-92667298-2	chr1	92667198	92667398	+	573.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18457.0	NM_153114	260301.0	Mm.219545	NM_153114	ENSMUSG00000044055	Otos	OTOSP	otospiralin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-117220710-2	chr4	117220610	117220810	+	668.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145637, intron 7 of 12)	PB1D7|SINE|Alu	31207.0	NM_001145637	381544.0	Mm.23504	NM_001033774	ENSMUSG00000060268	Armh1	1700012C08Rik|Gm1661|Gm1662|Ncrna00082	armadillo-like helical domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-53880931-2	chr5	53880843	53881043	+	733.0	f0_balb.idr|f1_balb.idr	intron (NM_144517, intron 15 of 20)	intron (NM_144517, intron 15 of 20)	71316.0	NM_144517	67249.0	Mm.28823	NM_144517	ENSMUSG00000039178	Tbc1d19	2810453K03Rik	TBC1 domain family, member 19	protein-coding	0.267240769422119	0.290433553449444	0.282881849803437	0.726562007286087	0.558460914533077	1.05714355823522	0.892086057966437	0.278050377710007	2.05223480456759	0.282200339992116	1
Merged-chr2-60948015-3	chr2	60947912	60948112	+	921.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	15192.0	NM_020296	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80250939-2	chr10	80250839	80251039	+	937.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_029272, intron 1 of 7)	ID_B1|SINE|B4	1487.0	NM_029272	75406.0	Mm.28712	NM_029272	ENSMUSG00000020153	Ndufs7	1010001M04Rik	NADH dehydrogenase (ubiquinone) Fe-S protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-52990271-3	chr3	52990183	52990383	+	869.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026225, intron 15 of 18)	intron (NM_026225, intron 15 of 18)	26940.0	NM_026225	67542.0	Mm.249548	NM_026225	ENSMUSG00000027742	Cog6	4933405E16Rik|AU018618|mKIAA1134	component of oligomeric golgi complex 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-93335497-4	chr4	93335404	93335604	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026954)	promoter-TSS (NM_026954)	7.0	NM_026954	69136.0	Mm.171558	NM_026954	ENSMUSG00000054000	Tusc1	2200001D17Rik|TSG-9	tumor suppressor candidate 1	protein-coding	3.5571415775708	2.0282090620375	3.72222034683243	3.18092862030907	3.5295009349914	2.67496572853464	3.97744044549598	2.77557997685443	0.136528433099816	0.840454611092158	0.998431161219273
Merged-chr18-36196210-2	chr18	36196110	36196310	+	697.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001167891, intron 1 of 9)	intron (NM_001167891, intron 1 of 9)	950.0	NM_001167891	100042150.0	Mm.380390	NM_001167891	ENSMUSG00000060275	Nrg2	Don1|NTAK	neuregulin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-25175392-4	chr9	25175281	25175481	+	877.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23600.0	NM_020586	80517.0	Mm.142843	NM_020586	ENSMUSG00000008429	Herpud2	5031400M07Rik|AB041580	HERPUD family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-147527977-4	chr5	147527870	147528070	+	998.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028291, intron 11 of 18)	intron (NM_028291, intron 11 of 18)	97814.0	NM_028291	72587.0	Mm.320469	NM_028291	ENSMUSG00000029647	Pan3	2700050F09Rik|A430027N15Rik|AU014670	PAN3 poly(A) specific ribonuclease subunit	protein-coding	-0.877999912835787	-0.862650162525095	-0.868440155809072	-0.872003619364467	-0.877101422327144	-0.859260676738364	-0.867428019291027	0.2182907524777	3.59113409116889	0.226256010831697	1
Merged-chr16-70873667-3	chr16	70873552	70873752	+	892.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	257227.0	NR_040474	52645.0	Mm.188475	NR_040474		D16Ertd519e	-	DNA segment, Chr 16, ERATO Doi 519, expressed	ncRNA	3.64461452618746	3.86951721858424	2.29456111971135	3.0024613457404	4.16043875526692	4.37960070516609	3.23792906304428	4.02497647631475	0.986591072061162	0.0850857383218356	0.448020902351155
Merged-chr5-139484571-4	chr5	139484467	139484667	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159908)	promoter-TSS (NM_001159908)	-76.0	NM_001159908	100494.0	Mm.24521	NM_133349	ENSMUSG00000053581	Zfand2a	AA407930|AU016206|Airap	zinc finger, AN1-type domain 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-39416802-2	chr6	39416702	39416902	+	596.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_018810, intron 1 of 7)	B1_Mus1|SINE|Alu	2974.0	NM_001311109	54484.0	Mm.270484	NM_018810	ENSMUSG00000029922	Mkrn1	RFP	makorin, ring finger protein, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-43442673-3	chr7	43442574	43442774	+	709.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028849, intron 3 of 4)	Lx6|LINE|L1	-1398.0	NM_026695	110826.0	Mm.30200	NM_026695	ENSMUSG00000004610	Etfb	0610009I16Rik|2810441H06Rik	electron transferring flavoprotein, beta polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-62635491-3	chr2	62635387	62635587	+	799.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027835, intron 2 of 15)	intron (NM_027835, intron 2 of 15)	10768.0	NM_027835	71586.0	Mm.136224	NM_027835	ENSMUSG00000026896	Ifih1	9130009C22Rik|Helicard|Hlcd|MDA5|RLR-2	interferon induced with helicase C domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-28442902-2	chr15	28442802	28443002	+	688.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133365, intron 70 of 78)	intron (NM_133365, intron 70 of 78)	239136.0	NM_133365	110082.0	Mm.248464	NM_133365	ENSMUSG00000022262	Dnah5	AU022615|Dnahc5|Mdnah5|b2b1134Clo|b2b1154Clo|b2b1537Clo|b2b1565Clo|b2b3491Clo|b2b601Clo|mKIAA1603	dynein, axonemal, heavy chain 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-24315621-4	chr2	24315521	24315721	+	787.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	-21239.0	NM_031167	16181.0	Mm.882	NM_031167	ENSMUSG00000026981	Il1rn	F630041P17Rik|IL-1ra	interleukin 1 receptor antagonist	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-100570784-3	chr9	100570699	100570899	+	912.276184	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001101483, intron 1 of 1)	CpG	286.0	NM_001101483	245020.0	Mm.236289	NM_001101483	ENSMUSG00000070287	Slc35g2	Gm519|Tmem22	solute carrier family 35, member G2	protein-coding	0.715691021318196	0.348910484896704	0.341423830215452	0.335625026386085	0.724745638061165	0.350593746406974	1.04369093623275	0.992981058367161	2.31536712275629	0.218561022356573	1
Merged-chr14-34548673-2	chr14	34548573	34548773	+	774.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039071, intron 8 of 12)	intron (NM_001039071, intron 8 of 12)	-25872.0	NM_030062	78243.0	Mm.117483	NM_030062	ENSMUSG00000021797	9230112D13Rik	-	RIKEN cDNA 9230112D13 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-152214276-3	chr4	152214163	152214363	+	821.116638	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133348, intron 2 of 8)	intron (NM_133348, intron 2 of 8)	14419.0	NM_001146058	70025.0	Mm.296191	NM_133348	ENSMUSG00000028937	Acot7	2410041A17Rik|Ach1|Act|Bach|CTE-IIa|Cte-II|Lach1	acyl-CoA thioesterase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-181588108-2	chr2	181588008	181588208	+	688.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_105973)	promoter-TSS (NR_105973)	-140.0	NR_105973	102465608.0		NR_105973	ENSMUSG00000098824	Mir7006	Gm27398|mmu-mir-7006	microRNA 7006	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-20646894-2	chr18	20646794	20646994	+	549.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_155534, intron 1 of 2)	MTEa|LTR|ERVL-MaLR	-18356.0	NM_013697	22139.0	Mm.2108	NM_013697	ENSMUSG00000061808	Ttr	AA408768|AI787086|D17860|prealbumin	transthyretin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-97590759-2	chr3	97590659	97590859	+	865.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026539, intron 8 of 22)	intron (NM_026539, intron 8 of 22)	19431.0	NM_026539	68058.0	Mm.31761	NM_026539	ENSMUSG00000028089	Chd1l	4432404A22Rik|Alc1|Snf2p	chromodomain helicase DNA binding protein 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-61973351-2	chr4	61973251	61973451	+	605.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	80766.0	NM_001012323	381530.0	Mm.460005	NM_001012323	ENSMUSG00000078672	Mup20	Gm12560|Mup24|darcin	major urinary protein 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-79645688-2	chr3	79645598	79645798	+	701.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_212452, intron 17 of 17)	B4A|SINE|B4	16619.0	NM_029482	75939.0	Mm.221520	NM_029482	ENSMUSG00000027811	4930579G24Rik	-	RIKEN cDNA 4930579G24 gene	protein-coding	-0.700064241511417	-0.186671140929496	-0.692852367725508	-0.695563882069579	-0.699394869705802	-0.177296101845517	-0.692077155152847	-0.695090216270211	0.0394491945098347	0.989215944639676	1
Merged-chr9-109082070-2	chr9	109081995	109082195	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025689)	promoter-TSS (NM_025689)	286.0	NM_183250	66167.0	Mm.2395	NM_183250	ENSMUSG00000091537	Tma7	1110017O22Rik|Ccdc72	translational machinery associated 7	protein-coding	0.931908930308686	1.99627579926606	2.02051645209975	1.17474613938404	1.13297393075942	1.45020758604635	2.03819254936209	1.51391842092453	-0.153940987914779	0.898524669153837	0.998431161219273
Merged-chr19-47066218-1	chr19	47066118	47066318	+	594.0	f1_c57bl6.idr	Intergenic	Intergenic	-1530.0	NM_177342	226182.0	Mm.301522	NM_177342	ENSMUSG00000025049	Taf5	6330528C20Rik|AV117817	TATA-box binding protein associated factor 5	protein-coding	-1.18378942727406	-1.15669478905697	-0.457913181653105	-1.17806440097404	-1.18323730008524	-1.15415234459186	-1.16577117532349	-1.17633933179771	-2.81844548480871	0.412768592413622	1
Merged-chr17-84186414-8	chr17	84186230	84186430	+	824.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001001806, exon 2 of 2)	exon (NM_001001806, exon 2 of 2)	1617.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-113615735-5	chr13	113615653	113615853	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130796, intron 1 of 1)	intron (NM_130796, intron 1 of 1)	2811.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-7579322-2	chr18	7579222	7579422	+	679.8000490000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360860, intron 1 of 17)	intron (NM_001360860, intron 1 of 17)	28832.0	NM_001360860	75739.0	Mm.133293	NM_001081287	ENSMUSG00000057440	Mpp7	1110068J02Rik|2810038M04Rik|5430426E14Rik|AI415104|Gm955	membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24489318-2	chr17	24489218	24489418	+	562.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360469, intron 1 of 17)	intron (NM_001360469, intron 1 of 17)	535.0	NM_027937	268932.0	Mm.70989	NM_027937	ENSMUSG00000033597	Caskin1	3300002N10Rik|C130061I24|C630036E02Rik|mKIAA1306	CASK interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-37872269-4	chr1	37872141	37872341	+	986.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001037918)	promoter-TSS (NM_001037918)	35.0	NM_001037918	623661.0	Mm.138000	NM_001037918	ENSMUSG00000037216	Lipt1	EG623661	lipoyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-4714945-3	chr11	4714846	4715046	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026015, intron 1 of 5)	intron (NM_026015, intron 1 of 5)	10290.0	NM_001356390	67178.0	Mm.271056	NM_026015	ENSMUSG00000009076	Zmat5	2610510L01Rik|D11Bwg0572e|D11Bwg1548e	zinc finger, matrin type 5	protein-coding	3.9178721505786	4.86634868229353	5.07023222224315	4.43192316354446	2.98262288272011	3.51637883365672	4.53529427036669	4.14566089350231	-0.933677998364117	0.0539316274265015	0.340325209956083
Merged-chr2-168112150-3	chr2	168112054	168112254	+	728.111145	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31150.0	NM_021409	58220.0	Mm.292834	NM_021409	ENSMUSG00000044641	Pard6b	AV025615|Par6b	par-6 family cell polarity regulator beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-73169537-4	chr14	73169431	73169631	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134083, intron 10 of 14)	Lx3_Mus|LINE|L1	26746.0	NR_033185	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-6371511-4	chr4	6371507	6371707	+	905.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001098227, intron 1 of 8)	URR1A|DNA|hAT-Charlie	5927.0	NM_001098227	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141069846-2	chr4	141069746	141069946	+	693.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_149724, intron 7 of 8)	intron (NR_149724, intron 7 of 8)	8511.0	NR_149724	66147.0	Mm.21187	NM_025383	ENSMUSG00000028923	Necap2	1110005F07Rik|AA409105|C78898|NECAP-2	NECAP endocytosis associated 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-21568692-3	chr12	21568598	21568798	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-151262.0	NM_011739	22630.0	Mm.289630	NM_011739	ENSMUSG00000076432	Ywhaq	2700028P07Rik|AA409740|AU021156|R74690	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	protein-coding	1.72059163573473	1.40961057667871	1.66275581899055	1.28202073430192	3.80586559771959	4.09873971044831	4.58351363329148	3.79150851335506	5.16493474451364	1.04051306782821e-07	9.21756731789455e-06
Merged-chr2-32708832-3	chr2	32708731	32708931	+	685.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130860, intron 6 of 6)	ORR1F|LTR|ERVL-MaLR	3953.0	NM_130860	107951.0	Mm.27557	NM_130860	ENSMUSG00000009555	Cdk9	PITALRE	cyclin-dependent kinase 9 (CDC2-related kinase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111695727-2	chr12	111695627	111695827	+	797.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17226.0	NM_001324481	70369.0	Mm.44239	NM_027404	ENSMUSG00000049792	Bag5	1600025G07Rik|4930405J06Rik|Bag-5	BCL2-associated athanogene 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-58104766-1	chr19	58104666	58104866	+	550.0	f0_balb.idr	intron (NM_181415, intron 28 of 28)	intron (NM_181415, intron 28 of 28)	53599.0	NR_049196	100885835.0		NR_049196	ENSMUSG00000093757	Mir5623	Gm26068|mir-5623|mmu-mir-5623	microRNA 5623	ncRNA	0.346576380536292	0.215351161459861	1.09499566512786	0.202580037248238	0.705195392707146	0.216967184050176	0.209747901762421	0.659178686189368	-0.370108035539486	0.849017486813491	1
Merged-chr13-49421178-4	chr13	49421093	49421293	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199056)	promoter-TSS (NM_199056)	-30.0	NR_075085	75678.0	Mm.390586	NM_199056	ENSMUSG00000021385	Ippk	1810043M15Rik|InsP6	inositol 1,3,4,5,6-pentakisphosphate 2-kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-10136594-4	chr18	10136522	10136722	+	931.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009071, intron 4 of 32)	intron (NM_009071, intron 4 of 32)	45170.0	NM_009071	19877.0	Mm.6710	NM_009071	ENSMUSG00000024290	Rock1	1110055K06Rik|Rock-I	Rho-associated coiled-coil containing protein kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-128111329-4	chr8	128111255	128111455	+	957.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	166870.0	NR_105822	102465212.0		NR_105822	ENSMUSG00000099326	Mir21c	Gm28013|mmu-mir-21c	microRNA 21c	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80404307-4	chr7	80404201	80404401	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081454, intron 1 of 15)	intron (NM_001081454, intron 1 of 15)	1135.0	NM_001081454	18550.0	Mm.5241	NM_011046	ENSMUSG00000030530	Furin	9130404I01Rik|Fur|PACE|Pcsk3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-25469642-2	chr14	25469542	25469742	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	10457.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76312497-3	chr15	76312398	76312598	+	918.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14_RN|LTR|ERV1	-5253.0	NM_153122	75475.0	Mm.322738	NM_153122	ENSMUSG00000022562	Oplah	1700010G02Rik	5-oxoprolinase (ATP-hydrolysing)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-151292440-2	chr5	151292340	151292540	+	994.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-76235.0	NR_045700	625175.0	Mm.443286	NR_045699	ENSMUSG00000097321	1700028E10Rik	A630054D14|Gm6561	RIKEN cDNA 1700028E10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-16974508-2	chr5	16974408	16974608	+	657.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	420607.0	NM_001289461	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-73490621-2	chr2	73490521	73490721	+	834.083313	f1_balb.idr|f1_c57bl6.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	-4868.0	NM_001289723	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3656446-4	chr4	3656361	3656561	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040643)	promoter-TSS (NR_040643)	-45.0	NR_040643	70143.0	Mm.417835	NR_040643	ENSMUSG00000085394	2210414B05Rik	-	RIKEN cDNA 2210414B05 gene	ncRNA	4.04974567365977	3.76024562879153	3.63747358710695	3.85981278033126	3.80795514356264	3.43570541473737	2.51560501169094	2.88302708893914	-0.865846868840193	0.11984156943484	0.542861496380273
Merged-chr10-10467183-2	chr10	10467161	10467361	+	698.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001127353, intron 1 of 36)	intron (NM_001127353, intron 1 of 36)	5053.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	0.000902214543352292	-0.114898110051912	0.040652262019989	-0.121941881159349	0.00460524402442943	0.342566220331959	0.0449100002118897	0.156628873361279	1.95246860794368	0.336806310976251	1
Merged-chr18-73575826-2	chr18	73575726	73575926	+	622.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039214, intron 1 of 1)	intron (NM_001039214, intron 1 of 1)	3121.0	NM_001039214	240396.0	Mm.24131	NM_001039214	ENSMUSG00000037253	Mex3c	A130001D14Rik|BC035207|BM-013|Rkhd2	mex3 RNA binding family member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100655741-2	chr11	100655641	100655841	+	676.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-5048.0	NM_177790	278304.0	Mm.274734	NM_177790	ENSMUSG00000014198	Zfp385c	A930006D11Rik|Znf385c	zinc finger protein 385C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-63921407-2	chr11	63921326	63921526	+	606.599976	f1_balb.idr|f1_c57bl6.idr	exon (NM_018805, exon 1 of 2)	exon (NM_018805, exon 1 of 2)	858.0	NM_018805	54710.0	Mm.274426	NM_018805	ENSMUSG00000070407	Hs3st3b1	3-OST-3B|3OST3B1|3Ost3b|AU041882|AW536289|Hs3st3b|m3-OST-3B	heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	protein-coding	-0.590353687393807	-0.74000206384626	0.183178148405157	-0.747404082086457	-0.752002080152052	-0.739066230707813	-0.743248427607196	-0.746837928697335	-3.45247666956327	0.213683577548399	1
Merged-chr5-5367715-4	chr5	5367597	5367797	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011074, intron 2 of 14)	intron (NM_011074, intron 2 of 14)	12554.0	NM_011074	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	5.20181616263046	5.4028184601041	5.43188600574186	5.35787580388352	5.6019957567863	5.33190992998432	5.52520553614064	5.38134646964512	0.137914918133749	0.609272640366701	0.974992433107985
Merged-chr1-33982176-3	chr1	33982064	33982264	+	839.5166630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276764, intron 3 of 102)	intron (NM_001276764, intron 3 of 102)	-29661.0	NM_133833	13518.0	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-49500922-1	chr16	49500822	49501022	+	721.0	f0_balb.idr	Intergenic	Intergenic	-198372.0	NM_028680	73916.0	Mm.241276	NM_028680	ENSMUSG00000032965	Ift57	4833420A15Rik|Esrrbl1|Hippi|MHS4R2	intraflagellar transport 57	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-33950427-1	chr17	33950327	33950527	+	670.0	f1_c57bl6.idr	TTS (NM_020603)	TTS (NM_020603)	1061.0	NM_019420	54218.0	Mm.11132	NM_019420	ENSMUSG00000067370	B3galt4	Gal-T2|Galt2	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 4	protein-coding	1.73128629646635	1.08049726611914	2.33507039691397	1.71221056816344	1.63693092079079	1.84153841864455	1.06524298786281	1.72126133288817	-0.610613339446571	0.60062942421724	0.972964840983327
Merged-chr14-61498962-2	chr14	61498862	61499062	+	662.333374	f1_balb.idr|f1_c57bl6.idr	intron (NR_045714, intron 2 of 2)	intron (NR_045714, intron 2 of 2)	6274.0	NR_045714	75349.0	Mm.233613	NR_045714	ENSMUSG00000115656	4930556J02Rik	-	RIKEN cDNA 4930556J02 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-165741841-4	chr1	165741730	165741930	+	987.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21928.0	NR_149310	433375.0	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-107182743-2	chr13	107182643	107182843	+	837.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	160173.0	NR_015471	100040322.0	Mm.133867	NR_015471	ENSMUSG00000071181	3830408C21Rik	-	RIKEN cDNA 3830408C21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-88878514-3	chr4	88878434	88878634	+	859.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	1667.0	NM_177348	230405.0	Mm.246593	NM_177348	ENSMUSG00000045364	Ifne	Ifn-tau-1|Ifne1|Ifnt1|Infe1	interferon epsilon	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-8339658-4	chr6	8339550	8339750	+	997.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302354, intron 2 of 3)	intron (NM_001302354, intron 2 of 3)	80362.0	NM_001302353	100036521.0	Mm.446106	NM_001302353	ENSMUSG00000089862	Umad1	Gm16039	UMAP1-MVP12 associated (UMA) domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-152295586-2	chr4	152295486	152295686	+	585.625	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1628.0	NR_037908	57295.0	Mm.277464	NM_133788	ENSMUSG00000039662	Icmt	1700008E11Rik|C80758|Gm13095|HSTE14|PPMT|STE14|pcCMT	isoprenylcysteine carboxyl methyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-22496929-3	chr8	22496842	22497042	+	800.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011394, intron 1 of 10)	ORR1C2|LTR|ERVL-MaLR	-20063.0	NM_001146117	102032.0	Mm.378231	NM_001012667	ENSMUSG00000031534	Smim19	AI316807|BG694986|EST-c39	small integral membrane protein 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-56689425-3	chr14	56689296	56689496	+	926.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153396, intron 9 of 12)	intron (NR_153396, intron 9 of 12)	11604.0	NR_046209	100503823.0	Mm.474486	NR_046209		Gm16973	-	predicted gene, 16973	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83619212-3	chr11	83619116	83619316	+	962.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_036453, intron 5 of 8)	intron (NR_036453, intron 5 of 8)	-26129.0	NM_009139	20305.0	Mm.137	NM_009139	ENSMUSG00000018927	Ccl6	MRP-1|Scya6|c10	chemokine (C-C motif) ligand 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-102576278-2	chr4	102576178	102576378	+	583.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019840, intron 6 of 14)	intron (NM_019840, intron 6 of 14)	6218.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	0.983782448100543	0.63007792409887	1.19328784702294	0.921460160507414	0.992860923011785	0.632002651601508	1.20486666859642	0.926405949445309	0.0383843685136084	0.979380972567872	1
Merged-chr4-150176714-3	chr4	150176604	150176804	+	609.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr	Intergenic	Intergenic	24431.0	NM_009802	12353.0	Mm.232523	NM_009802	ENSMUSG00000028972	Car6	Ca6|DOC1	carbonic anhydrase 6	protein-coding	3.37072903795685	3.91581544668093	2.51203093573531	3.75279782757419	3.65668936992051	3.87321757107923	3.60032306504598	3.5678046398924	0.285548770308528	0.603139696423989	0.973565005745828
Merged-chr6-122863963-3	chr6	122863830	122864030	+	862.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7773.0	NM_009779	12267.0	Mm.2408	NM_009779	ENSMUSG00000040552	C3ar1	AZ3B|C3AR|HNFAG09	complement component 3a receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-68059578-4	chr18	68059471	68059671	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172631, intron 1 of 5)	intron (NM_172631, intron 1 of 5)	126398.0	NM_172631	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-94601321-2	chr8	94601238	94601438	+	766.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026274)	promoter-TSS (NM_026274)	388.0	NM_028221	102122.0	Mm.250425	NM_028221	ENSMUSG00000031774	Fam192a	1700001O11Rik|2310065K24Rik|AI596259|Nip30	family with sequence similarity 192, member A	protein-coding	2.34103697612065	3.20419212570451	3.18051250297949	3.43414456350895	3.23099260373306	1.59783894330751	2.05895085259498	3.18453953205061	-0.670013809310376	0.395319448268432	0.882909751294042
Merged-chr17-46351213-2	chr17	46351113	46351313	+	687.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MMERGLN-int|LTR|ERV1	-23190.0	NM_170680	224814.0	Mm.76543	NM_145140	ENSMUSG00000032842	Abcc10	Mrp7|mFLJ00002	ATP-binding cassette, sub-family C (CFTR/MRP), member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-59795285-2	chr10	59795185	59795385	+	606.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359267, intron 8 of 11)	RLTR23|LTR|ERV1	-84306.0	NM_019965	56709.0	Mm.103610	NM_019965	ENSMUSG00000020109	Dnajb12	Dj10|mDj10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-100130580-2	chr12	100130480	100130680	+	552.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_183155, exon 11 of 14)	exon (NM_183155, exon 11 of 14)	18249.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-37435626-2	chr6	37435526	37435726	+	727.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178661, intron 1 of 11)	intron (NM_178661, intron 1 of 11)	6522.0	NM_178661	208647.0	Mm.169929	NM_178661	ENSMUSG00000038648	Creb3l2	BBF2H7|C530025K05Rik|SCIRR69	cAMP responsive element binding protein 3-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-34269320-3	chr4	34269227	34269427	+	946.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-219260.0	NM_026293	67652.0	Mm.55848	NM_026293	ENSMUSG00000028264	Spaca1	1700124L11Rik|4930540L03Rik	sperm acrosome associated 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-56896533-3	chr8	56896434	56896634	+	815.211121	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	345400.0	NM_015791	50753.0	Mm.251174	NM_015791	ENSMUSG00000038206	Fbxo8	Fbx8	F-box protein 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-164864586-2	chr2	164864486	164864686	+	993.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-6878.0	NM_011125	18830.0	Mm.6105	NM_011125	ENSMUSG00000017754	Pltp	Bpife|OD107	phospholipid transfer protein	protein-coding	0.120980175120638	-0.0931302663388199	0.291678736069068	-0.0992547634037391	0.126684395560706	-0.0923413030253395	0.299741549551563	-0.0987935275770274	0.0411516003055829	0.985164602345305	1
Merged-chr4-42902332-4	chr4	42902238	42902438	+	896.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14268.0	NM_001355693	230085.0	Mm.240965	NM_172690	ENSMUSG00000036062	Phf24	GINIP|N28178	PHD finger protein 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70615253-2	chr8	70615088	70615288	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-1656.0	NM_153074	211228.0	Mm.132939	NM_153074	ENSMUSG00000049988	Lrrc25	Mapa	leucine rich repeat containing 25	protein-coding	3.2107827596634	2.22816739885987	2.15626934874822	2.49496360656566	2.89198743451963	2.24392953809737	2.58552849944954	2.50756064559478	-0.0631607716634368	0.935504538539122	0.998431161219273
Merged-chr13-74210205-2	chr13	74210105	74210305	+	643.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_009644)	TTS (NM_009644)	-1505.0	NM_177333	211446.0	Mm.261859	NM_177333	ENSMUSG00000034152	Exoc3	2810050O03Rik|E430013E20Rik|Sec6|Sec6l1	exocyst complex component 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-132341911-4	chr1	132341810	132342010	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25785.0	NM_028778	74137.0	Mm.100666	NM_028778	ENSMUSG00000009772	Nuak2	1200013B22Rik|Omphk2|Snark|mKIAA0537	NUAK family, SNF1-like kinase, 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128269873-2	chr10	128269773	128269973	+	587.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019963)	promoter-TSS (NM_019963)	-625.0	NM_019963	20847.0	Mm.293120	NM_019963	ENSMUSG00000040033	Stat2	1600010G07Rik|AW496480	signal transducer and activator of transcription 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-45221221-2	chr14	45221121	45221321	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027518, intron 1 of 6)	intron (NM_027518, intron 1 of 6)	1504.0	NM_027518	70713.0	Mm.343793	NM_027518	ENSMUSG00000049092	Gpr137c	6330416L11Rik|Gm908|TM7SF1L2	G protein-coupled receptor 137C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-104165580-3	chr3	104165468	104165668	+	934.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133853, intron 1 of 21)	L2c|LINE|L2	54838.0	NM_133853	99470.0	Mm.264849	NM_133853	ENSMUSG00000052539	Magi3	4732496O19Rik|6530407C02Rik|AA407180|AI120132|mKIAA1634	membrane associated guanylate kinase, WW and PDZ domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-8871520-4	chr19	8871412	8871612	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001362044)	promoter-TSS (NM_001362044)	-36.0	NM_146093	225896.0	Mm.27839	NM_146093	ENSMUSG00000071655	Ubxn1	2B28|4930455J02Rik|D19Ertd721e|T25529|mY33K	UBX domain protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105826646-6	chr8	105826584	105826784	+	893.861084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145824, intron 1 of 13)	intron (NM_145824, intron 1 of 13)	666.0	NM_145824	74334.0	Mm.4206	NM_145824	ENSMUSG00000037415	Ranbp10	4432417N03Rik	RAN binding protein 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115493152-3	chr5	115492982	115493182	+	930.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8598.0	NM_133760	75387.0	Mm.332616	NM_133760	ENSMUSG00000029524	Sirt4	4930596O17Rik	sirtuin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-39416524-2	chr6	39416424	39416624	+	587.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_018810, intron 1 of 7)	intron (NM_018810, intron 1 of 7)	3252.0	NM_001311109	54484.0	Mm.270484	NM_018810	ENSMUSG00000029922	Mkrn1	RFP	makorin, ring finger protein, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-8509812-4	chr6	8509716	8509916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040452)	promoter-TSS (NR_040452)	216.0	NM_133236	170772.0	Mm.210787	NM_133236	ENSMUSG00000029638	Glcci1	2310047L21Rik|A130036A18Rik|Fam117c|Gig18|Tssn1	glucocorticoid induced transcript 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-109706002-2	chr8	109705902	109706102	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029468)	promoter-TSS (NM_029468)	-17.0	NM_029468	75871.0	Mm.180410	NM_029468	ENSMUSG00000031728	Zfp821	4930566A11Rik|Znf821	zinc finger protein 821	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-53797740-2	chr11	53797640	53797840	+	833.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_033332, intron 3 of 3)	intron (NR_033332, intron 3 of 3)	27267.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-119009772-2	chr14	119009672	119009872	+	847.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081252, intron 31 of 38)	intron (NM_001081252, intron 31 of 38)	71840.0	NM_008929	100037258.0	Mm.12616	NM_008929	ENSMUSG00000022136	Dnajc3	AA408985|AU067833|Dnajc3a|Dnajc3b|Prkri|mp58|p58|p58IPK	DnaJ heat shock protein family (Hsp40) member C3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-142091270-4	chr4	142091164	142091364	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-6960.0	NM_145402	214359.0	Mm.27587	NM_145402	ENSMUSG00000040616	Tmem51	BC003277	transmembrane protein 51	protein-coding	4.0892721563477	4.61827416473927	3.73004305936244	4.63096269237616	4.44727626725065	4.22095275113586	5.29702924503753	4.88048749954323	0.580246704389224	0.161395649034189	0.622327384549716
Merged-chr3-53027540-3	chr3	53027441	53027641	+	776.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10318.0	NM_026225	67542.0	Mm.249548	NM_026225	ENSMUSG00000027742	Cog6	4933405E16Rik|AU018618|mKIAA1134	component of oligomeric golgi complex 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-106317198-2	chr4	106317098	106317298	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183225, intron 1 of 67)	intron (NM_183225, intron 1 of 67)	985.0	NM_183225	329908.0	Mm.234544	NM_183225	ENSMUSG00000028514	Usp24	2700066K03Rik|2810030C21Rik|AI414051|B130021E18|C79851	ubiquitin specific peptidase 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-94363504-4	chr8	94363396	94363596	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019415, intron 24 of 24)	intron (NM_019415, intron 24 of 24)	-22933.0	NM_001357205	64209.0	Mm.29151	NM_022331	ENSMUSG00000031770	Herpud1	Herp|Mifl|SUP	homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-34249688-4	chr10	34249557	34249757	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32533.0	NM_009433	22110.0	Mm.20445	NM_009433	ENSMUSG00000047514	Tspyl1	Tspyl	testis-specific protein, Y-encoded-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132923864-2	chr4	132923792	132923992	+	617.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-1341.0	NM_001163792	230789.0	Mm.11473	NM_145553	ENSMUSG00000028878	Fam76a	-	family with sequence similarity 76, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-66290439-2	chr14	66290339	66290539	+	615.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER5|LTR|ERV1	-6586.0	NM_029979	66854.0	Mm.43871	NM_029979	ENSMUSG00000022043	Trim35	0710005M05Rik|A430106H13Rik|AW046487|HLS5|Mair|NC8|mKIAA1098	tripartite motif-containing 35	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128784152-2	chr2	128784035	128784235	+	763.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 15 of 18)	intron (NM_008587, intron 15 of 18)	-34168.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	1.29661315494641	0.603072207371005	0.591885354656575	1.06744719992307	1.53950265922204	0.605572824893773	0.594366133086674	1.30225342206876	0.667681444980613	0.688348782604934	0.996533206832645
Merged-chr11-121362425-2	chr11	121362325	121362525	+	988.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_139147, intron 2 of 5)	intron (NM_139147, intron 2 of 5)	-7978.0	NM_025793	66840.0	Mm.103986	NM_025793	ENSMUSG00000025173	Wdr45b	0610008N23Rik|AA408735|D16Bwg0193e|WIPI-3|Wdr45l	WD repeat domain 45B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120316227-4	chr11	120316126	120316326	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31187.0	NR_105900	102465564.0		NR_105900	ENSMUSG00000098955	Mir6935	Gm27344|mmu-mir-6935	microRNA 6935	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-102149352-1	chr7	102149252	102149452	+	603.0	f1_balb.idr	intron (NM_001287167, intron 18 of 19)	B1_Mus1|SINE|Alu	-32639.0	NM_001081424	504186.0	Mm.334074	NM_001081424	ENSMUSG00000066279	Chrna10	-	cholinergic receptor, nicotinic, alpha polypeptide 10	protein-coding	-1.36015291771705	-1.32842431658676	-1.33874579108173	-1.34722415754512	-1.35969949349639	-1.32618761000664	-1.33640923549635	-0.791042329471244	2.42373733289067	0.484013421080845	1
Merged-chr6-72428219-4	chr6	72428106	72428306	+	863.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019802, intron 10 of 14)	intron (NM_019802, intron 10 of 14)	-10477.0	NR_046011	78108.0	Mm.440743	NR_046011	ENSMUSG00000108591	Particl	4930414L22Rik|AI449819	promoter of Mat2a antisense radiation induced circulating long non-coding RNA	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-58594442-3	chr6	58594297	58594497	+	637.266663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355477, intron 1 of 15)	intron (NM_001355477, intron 1 of 15)	-2275.0	NM_011920	26357.0	Mm.333096	NM_011920	ENSMUSG00000029802	Abcg2	ABC15|ABCP|AI428558|BCRP|Bcrp1|MXR|MXR1	ATP binding cassette subfamily G member 2 (Junior blood group)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-80454202-4	chr1	80454105	80454305	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040460, intron 2 of 2)	ORR1E|LTR|ERVL-MaLR	8273.0	NR_040460	72208.0	Mm.396181	NR_040460	ENSMUSG00000101483	1700016L21Rik	CD11c-DTR|DCKO|DTR-GFP|DTR-GRP|Jr3|Tg(Itgax-DTR/EGFP)57Lan	RIKEN cDNA 1700016L21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-5418503-4	chr5	5418402	5418602	+	752.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	-38251.0	NM_011074	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-75614348-2	chr2	75614248	75614448	+	761.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-44911.0	NM_146130	229279.0	Mm.316306	NM_053263	ENSMUSG00000059005	Hnrnpa3	2410013L13Rik|2610209F03Rik|2610510D13Rik|Hnrpa3	heterogeneous nuclear ribonucleoprotein A3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-114829837-2	chr13	114829737	114829937	+	544.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_013826)	TTS (NM_013826)	11600.0	NM_001113374	17434.0	Mm.19027	NM_013826	ENSMUSG00000015536	Mocs2	AI415403	molybdenum cofactor synthesis 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-46452545-5	chr4	46452400	46452600	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130889, intron 1 of 6)	CpG	1574.0	NM_130889	67628.0	Mm.263913	NM_130889	ENSMUSG00000028333	Anp32b	2410015B15Rik|PAL31|PHAPI2a|Ssp29	acidic (leucine-rich) nuclear phosphoprotein 32 family, member B	protein-coding	4.6354410484958	4.41460817440334	4.43717944410811	3.59123519993012	4.60118687538156	4.75742480628939	4.65978569970911	3.51880027521811	0.176640934870653	0.690039213286325	0.996533206832645
Merged-chr5-102537949-3	chr5	102537858	102538058	+	786.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146161, intron 1 of 8)	intron (NM_146161, intron 1 of 8)	56567.0	NM_029270	231532.0	Mm.440191	NM_029270	ENSMUSG00000057315	Arhgap24	0610025G21Rik	Rho GTPase activating protein 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27935737-2	chr17	27935637	27935837	+	911.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_181413, intron 1 of 24)	(TG)n|Simple_repeat|Simple_repeat	26431.0	NM_181413	224650.0	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-83140202-3	chr8	83140084	83140284	+	809.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-25168.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	1.9951669088022	2.1030326897245	1.53305494119605	2.4812090562981	2.37389060406335	2.36925188903912	1.5425251126041	1.98838815477767	0.0991194934382179	0.916520086079911	0.998431161219273
Merged-chr1-157413199-2	chr1	157413114	157413314	+	653.0	f0_balb.idr|f1_balb.idr	promoter-TSS (NM_177644)	promoter-TSS (NM_177644)	-619.0	NM_177644	226525.0	Mm.235028	NM_177644	ENSMUSG00000070565	Rasal2	6530401P13|A330066M24Rik	RAS protein activator like 2	protein-coding	0.290776690856727	0.313479609171817	0.894869794962944	0.300344865039979	0.691864936053695	1.06989122772453	0.495917577935892	0.475429621088952	1.34674519296131	0.45349499489323	1
Merged-chr6-106800046-4	chr6	106799920	106800120	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175357)	promoter-TSS (NM_175357)	67.0	NM_021449	58799.0	Mm.290085	NM_021449	ENSMUSG00000005362	Crbn	2610203G15Rik|2900045O07Rik|AF229032|AW108261|piL	cereblon	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-6602110-2	chr15	6602010	6602210	+	959.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011815, intron 1 of 17)	intron (NM_011815, intron 1 of 17)	22263.0	NM_011815	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-107012811-4	chr11	107012688	107012888	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-13263.0	NM_010655	16647.0	Mm.12508	NM_010655	ENSMUSG00000018362	Kpna2	2410044B12Rik|IPOA1|PTAC58|Rch1	karyopherin (importin) alpha 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-9670580-3	chr4	9670508	9670708	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	-1264.0	NM_001290367	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	2.17019173102803	2.99445369252834	3.25164438340093	2.96324247890149	2.0574017589202	2.4691890328599	1.88581759583806	1.34624498128999	-1.92298349732354	0.0241127029120096	0.203639753311796
Merged-chr12-70966174-2	chr12	70966074	70966274	+	916.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	-8449.0	NM_001310595	19167.0	Mm.296338	NM_011184	ENSMUSG00000060073	Psma3	Lmpc8	proteasome (prosome, macropain) subunit, alpha type 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-155151705-2	chr4	155151607	155151807	+	849.214294	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	65103.0	NM_001356327	76866.0	Mm.200590	NM_001081100	ENSMUSG00000029049	Morn1	2900057D20Rik|4930417P05Rik|AU042805	MORN repeat containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5138915-4	chr17	5138793	5138993	+	977.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 4 of 19)	intron (NM_001085355, intron 4 of 19)	143819.0	NM_001085355	239985.0	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-8595641-4	chr3	8595531	8595731	+	933.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32420.0	NR_153352	102635065.0		NR_153352	ENSMUSG00000104102	Gm32496	-	predicted gene, 32496	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124443288-4	chr5	124443194	124443394	+	924.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310725, intron 1 of 6)	intron (NM_001310725, intron 1 of 6)	-2205.0	NM_001310723	67956.0	Mm.137966	NM_030241	ENSMUSG00000049327	Kmt5a	2410195B05Rik|AA617402|AW536475|PR-SET7|PR/SET07|Setd8	lysine methyltransferase 5A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116442588-2	chr11	116442488	116442688	+	600.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033267, intron 13 of 13)	intron (NM_001033267, intron 13 of 13)	8375.0	NR_003376	664849.0	Mm.258466	NR_003376		Gm7367	EG664849	1110014K08Rik pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-9549414-3	chr1	9549321	9549521	+	785.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357377, intron 2 of 14)	intron (NM_001357377, intron 2 of 14)	1473.0	NM_001357376	76187.0	Mm.28514	NM_175236	ENSMUSG00000025911	Adhfe1	6330565B14Rik|AI043035|Adh8|HOT	alcohol dehydrogenase, iron containing, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-69193227-3	chr3	69193133	69193333	+	854.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29186.0	NM_027843	71619.0	Mm.98122	NM_027843	ENSMUSG00000098207	Arl14	9130014L17Rik|Arf7	ADP-ribosylation factor-like 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-34213079-3	chr19	34212979	34213179	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360718, intron 1 of 10)	intron (NM_001360718, intron 1 of 10)	-4429.0	NM_001360719	76630.0	Mm.130952	NM_029682	ENSMUSG00000024776	Stambpl1	1700095N21Rik|8230401J17Rik|ALMalpha|AMSH-FP	STAM binding protein like 1	protein-coding	2.73266772452296	2.96987080052617	2.9874918859644	1.58921537480312	3.87930707590886	3.70776206469814	4.27139142326903	3.91358537438383	2.03705800987087	0.000841785219431621	0.016832898437901
Merged-chr8-40023644-4	chr8	40023539	40023739	+	787.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	263314.0	NM_030610	80857.0	Mm.425526	NM_030610	ENSMUSG00000031603	Fgf20	-	fibroblast growth factor 20	protein-coding	3.61906221736318	2.89640482183912	2.79985214826713	3.03038169884509	3.13819916726123	2.78528450290164	3.13954636364219	2.84824469234003	-0.264764065662392	0.676072476907293	0.99440487726309
Merged-chr17-44252870-1	chr17	44252770	44252970	+	576.0	f1_balb.idr	intron (NM_172621, intron 4 of 5)	B3A|SINE|B2	64298.0	NM_172621	224796.0	Mm.37666	NM_172621	ENSMUSG00000023959	Clic5	5730531E12Rik|B330005L24|Gm322|jbg|nmf318	chloride intracellular channel 5	protein-coding	2.19707514383396	3.76174439755813	3.8344981316824	2.33485220966175	3.8366200188943	3.98839576826059	3.4319495088587	2.92980402302921	0.554999450555737	0.401448862817815	0.886751325563677
Merged-chr2-131043976-2	chr2	131043918	131044118	+	602.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001136063)	promoter-TSS (NM_001136063)	-930.0	NM_001136063	14588.0	Mm.198399	NM_020014	ENSMUSG00000027316	Gfra4	AW060733|G630015H18Rik	glial cell line derived neurotrophic factor family receptor alpha 4	protein-coding	0.898409860249105	1.19353503399174	0.93657505017951	1.69876476208453	1.38989816674449	1.7099839763764	1.7686072135662	2.07275065186001	1.85410083413891	0.140036030990526	0.584333051179342
Merged-chr16-38506245-3	chr16	38506141	38506341	+	841.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024273, intron 4 of 6)	intron (NM_024273, intron 4 of 6)	16422.0	NM_024273	76916.0	Mm.132231	NM_024273	ENSMUSG00000002846	Timmdc1	2810021C21Rik|4930455C21Rik|AV135763	translocase of inner mitochondrial membrane domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-41197453-4	chr12	41197368	41197568	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053122, intron 4 of 6)	intron (NM_053122, intron 4 of 6)	173378.0	NM_053122	93757.0	Mm.363813	NM_053122	ENSMUSG00000056899	Immp2l	AI853880|IMP2|Tg(HLA-A/H2-D)2Enge	IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94549968-2	chr10	94549868	94550068	+	682.833313	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359760)	promoter-TSS (NM_001359760)	-904.0	NM_001359761	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-107988145-4	chr5	107988068	107988268	+	915.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-1091.0	NM_026062	67266.0	Mm.277897	NM_026062	ENSMUSG00000029270	Fam69a	2900024C23Rik|AI315274	family with sequence similarity 69, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-172303490-2	chr1	172303390	172303590	+	576.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5426.0	NM_178405	98660.0	Mm.207432	NM_178405	ENSMUSG00000007097	Atp1a2	AW060654|Atpa-3|mKIAA0778	ATPase, Na+/K+ transporting, alpha 2 polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-158157503-2	chr2	158157403	158157603	+	738.416626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11111.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-5345504-4	chr9	5345411	5345611	+	695.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009808)	promoter-TSS (NM_009808)	35.0	NM_009808	12364.0	Mm.42163	NM_009808	ENSMUSG00000025887	Casp12	-	caspase 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67712787-4	chr10	67712678	67712878	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MamRep38|DNA|hAT	-140819.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-85335875-1	chr15	85335775	85335975	+	548.5	f1_balb.idr	promoter-TSS (NM_016843)	promoter-TSS (NM_016843)	-506.0	NM_016843	54138.0	Mm.248906	NM_016843	ENSMUSG00000016541	Atxn10	AI325283|C77170|E46|Sca10|TEG-169|Tex169	ataxin 10	protein-coding	-0.0433339625049608	0.304796508677419	-0.0339289536401161	0.363019370692045	0.212596395508654	0.444795054479279	-0.0329131200773785	-0.0368560754719986	0.0165289061598278	0.993881671615372	1
Merged-chr4-114908261-3	chr4	114908146	114908346	+	770.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008593, exon 1 of 1)	exon (NM_008593, exon 1 of 1)	652.0	NM_008593	17301.0	Mm.7997	NM_008593	ENSMUSG00000055210	Foxd2	AI426778|Mf2	forkhead box D2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5947446-2	chr17	5947346	5947546	+	611.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_151772, intron 1 of 25)	intron (NR_151772, intron 1 of 25)	6166.0	NM_001113352	20975.0	Mm.236068	NM_011523	ENSMUSG00000023805	Synj2	AI481647|SJ2|mKIAA0348	synaptojanin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-8859659-4	chr10	8859556	8859756	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 1 of 19)	B1F1|SINE|Alu	26414.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-61606021-2	chr10	61605921	61606121	+	641.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177511, intron 1 of 3)	intron (NM_001177511, intron 1 of 3)	10537.0	NM_001177511	237362.0	Mm.131297	NM_001177511	ENSMUSG00000020090	Npffr1	Gm236|Gpr147|NPFF1|NPFF1R|OT7T022	neuropeptide FF receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-33393473-4	chr14	33393351	33393551	+	908.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310452, intron 4 of 10)	MTD|LTR|ERVL-MaLR	17573.0	NM_001310452	26419.0	Mm.21495	NM_016700	ENSMUSG00000021936	Mapk8	AI849689|JNK|JNK1|Prkm8|SAPK1	mitogen-activated protein kinase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-91313401-4	chr8	91313307	91313507	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173431)	promoter-TSS (NM_173431)	-118.0	NM_011936	26383.0	Mm.4375	NM_011936	ENSMUSG00000055932	Fto	AW743446|mKIAA1752	fat mass and obesity associated	protein-coding	7.88517797609835	8.14322685772549	8.07915168802803	8.01879154808924	7.73585503339642	8.17042526673878	8.40162619910421	7.66546213997378	-0.0114202145347157	0.943455758036325	0.998431161219273
Merged-chr12-110598443-6	chr12	110598307	110598507	+	788.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2988.0	NM_030238	13424.0	Mm.181430	NM_030238	ENSMUSG00000018707	Dync1h1	9930018I23Rik|AI894280|DHC1|DHC1a|DNCL|Dnchc1|Dnec1|Dnecl|Loa|MAP1C|P22|Swl|mKIAA0325	dynein cytoplasmic 1 heavy chain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-105639405-2	chr7	105639305	105639505	+	860.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_029802, exon 2 of 8)	exon (NM_029802, exon 2 of 8)	1011.0	NM_029802	76932.0	Mm.41637	NM_029802	ENSMUSG00000030881	Arfip2	2310002N04Rik|POR|Por1	ADP-ribosylation factor interacting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-24894760-4	chr6	24894667	24894867	+	933.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36770.0	NM_028957	74468.0	Mm.251601	NM_028957	ENSMUSG00000029678	Hyal5	4933439A12Rik	hyaluronoglucosaminidase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-90904944-7	chr5	90904791	90904991	+	987.5238039999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009140, intron 3 of 3)	intron (NM_009140, intron 3 of 3)	992.0	NM_009140	20310.0	Mm.4979	NM_009140	ENSMUSG00000058427	Cxcl2	CINC-2a|GROb|Gro2|MIP-2|MIP-2a|Mgsa-b|Mip2|Scyb|Scyb2	chemokine (C-X-C motif) ligand 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-179517575-2	chr1	179517475	179517675	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027188, intron 1 of 11)	intron (NM_027188, intron 1 of 11)	466.0	NM_027188	69726.0	Mm.222338	NM_027188	ENSMUSG00000055067	Smyd3	2410008A19Rik|Zmynd1	SET and MYND domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3222311-2	chr12	3222211	3222411	+	726.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13480.0	NR_015551	74173.0	Mm.309774	NM_028796	ENSMUSG00000079179	Rab10os	1700012B15Rik|1810036A22Rik	RAB10, member RAS oncogene family, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-75921432-7	chr10	75921323	75921523	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001161853, exon 1 of 9)	5' UTR (NM_001161853, exon 1 of 9)	191.0	NM_011418	20587.0	Mm.279751	NM_011418	ENSMUSG00000000902	Smarcb1	AU020204|Baf47|Ini1|SNF5/INI1|Snf5	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-56463994-4	chr9	56463898	56464098	+	879.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025812, intron 1 of 9)	intron (NM_025812, intron 1 of 9)	45379.0	NM_025812	66867.0	Mm.150856	NM_025812	ENSMUSG00000032329	Hmg20a	1200004E06Rik|5730490E10Rik|Hmgxb1|Ibraf	high mobility group 20A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-52684440-4	chr18	52684330	52684530	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9249.0	NM_010293	14625.0	Mm.32242	NM_010293	ENSMUSG00000053624	Gykl1	AI449806|Gk-rs1	glycerol kinase-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-83810120-1	chr2	83810020	83810220	+	996.0	f1_balb.idr	Intergenic	Intergenic	-2608.0	NM_175514	241520.0	Mm.330351	NM_175514	ENSMUSG00000048388	Fam171b	D430039N05Rik	family with sequence similarity 171, member B	protein-coding	-0.155113800811507	-0.132694187161326	-0.139937824367106	-0.145592608871713	-0.153686550674032	0.918877833569802	-0.138332006009278	0.59640364167301	4.20232979080207	0.0682436532421723	1
Merged-chr5-135772074-2	chr5	135771974	135772174	+	780.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_029659, intron 1 of 8)	intron (NM_029659, intron 1 of 8)	6227.0	NM_001289554	76571.0	Mm.247666	NM_029659	ENSMUSG00000019178	Styxl1	1700011C14Rik|Dusp24|Mkstyx	serine/threonine/tyrosine interacting-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-32130357-4	chr16	32130273	32130473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30571.0	NM_025892	66994.0	Mm.22990	NM_025892	ENSMUSG00000035790	Cep19	1500031L02Rik|AI428934|AL022620	centrosomal protein 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-120030397-2	chr9	120030297	120030497	+	576.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx10|LINE|L1	-6799.0	NM_011724	22437.0	Mm.10117	NM_011724	ENSMUSG00000079243	Xirp1	AI415219|Cmya1	xin actin-binding repeat containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-55017760-4	chr6	55017575	55017775	+	862.133301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20326.0	NM_180678	353172.0	Mm.250004	NM_180678	ENSMUSG00000029777	Gars	GENA202|Gena201|Nmf249|Sgrp23	glycyl-tRNA synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-87470596-2	chr6	87470496	87470696	+	973.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_175476, exon 6 of 11)	exon (NM_175476, exon 6 of 11)	25731.0	NR_104483	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-147546510-2	chr5	147546410	147546610	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001359433, exon 20 of 20)	3' UTR (NM_001359433, exon 20 of 20)	116354.0	NM_028291	72587.0	Mm.320469	NM_028291	ENSMUSG00000029647	Pan3	2700050F09Rik|A430027N15Rik|AU014670	PAN3 poly(A) specific ribonuclease subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47630933-2	chr17	47630833	47631033	+	570.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198421, intron 1 of 6)	intron (NM_198421, intron 1 of 6)	243.0	NM_198421	224836.0	Mm.59393	NM_198421	ENSMUSG00000090115	Usp49	C330046L10Rik|Gm545	ubiquitin specific peptidase 49	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-8347833-4	chr12	8347719	8347919	+	790.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34386.0	NM_021429	58240.0	Mm.309954	NM_021429	ENSMUSG00000020605	Hs1bp3	-	HCLS1 binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180970109-2	chr1	180970009	180970209	+	576.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144794, intron 18 of 22)	intron (NM_144794, intron 18 of 22)	27591.0	NM_144794	208795.0	Mm.185518	NM_144794	ENSMUSG00000026519	Tmem63a	BC014795|Tmem64a	transmembrane protein 63a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166021244-4	chr2	166021132	166021332	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008679, intron 1 of 22)	intron (NM_008679, intron 1 of 22)	28595.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34091084-2	chr17	34090941	34091141	+	910.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_046183, intron 3 of 4)	intron (NR_046183, intron 3 of 4)	-1338.0	NM_008206	15001.0	Mm.116	NM_008206	ENSMUSG00000024334	H2-Oa	H-2Oa	histocompatibility 2, O region alpha locus	protein-coding	0.844678568614623	0.884432346922634	0.378945474470492	1.10010893571285	0.64272479286501	0.38797292416541	0.380572792590663	0.543803288130542	-2.17950980380731	0.21860931228934	1
Merged-chr7-139995008-3	chr7	139994948	139995148	+	858.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_133755)	TTS (NM_133755)	-2486.0	NM_001291066	11501.0	Mm.15969	NM_007403	ENSMUSG00000025473	Adam8	ADAM 8|CD156|CD156a|E430039A18Rik|MS2	a disintegrin and metallopeptidase domain 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167007788-4	chr2	167007696	167007896	+	991.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7517.0	NM_153065	228889.0	Mm.295031	NM_153065	ENSMUSG00000017999	Ddx27	C86129	DEAD (Asp-Glu-Ala-Asp) box polypeptide 27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-166408549-2	chr1	166408449	166408649	+	830.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001142948, intron 1 of 4)	intron (NM_001142948, intron 1 of 4)	1279.0	NM_001142948	71592.0	Mm.192094	NM_175170	ENSMUSG00000040596	Pogk	9130401E23Rik|BASS2|mKIAA1513	pogo transposable element with KRAB domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47797043-2	chr17	47796943	47797143	+	641.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	11299.0	NM_011549	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124442513-6	chr5	124442229	124442429	+	795.886108	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310725, intron 1 of 6)	intron (NM_001310725, intron 1 of 6)	2399.0	NM_001310725	67956.0	Mm.137966	NM_030241	ENSMUSG00000049327	Kmt5a	2410195B05Rik|AA617402|AW536475|PR-SET7|PR/SET07|Setd8	lysine methyltransferase 5A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-138752554-2	chr1	138752454	138752654	+	874.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-70479.0	NR_040304	545363.0	Mm.362817	NR_040304	ENSMUSG00000100459	Gm5833	-	predicted gene 5833	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-66394375-4	chr8	66394271	66394471	+	912.55835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175188, intron 5 of 7)	intron (NM_175188, intron 5 of 7)	8070.0	NM_001166375	72925.0	Mm.380457	NM_175188	ENSMUSG00000036469	March1	2900024D24Rik|BB085186	membrane-associated ring finger (C3HC4) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-24595445-6	chr8	24595354	24595554	+	660.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001293690, exon 1 of 10)	5' UTR (NM_001293690, exon 1 of 10)	212.0	NM_001293690	15930.0	Mm.392	NM_008324	ENSMUSG00000031551	Ido1	Ido|Indo	indoleamine 2,3-dioxygenase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94372883-4	chr10	94372772	94372972	+	956.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 1 of 4)	intron (NM_001359762, intron 1 of 4)	60923.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-49982016-4	chr18	49981907	49982107	+	772.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177759, intron 1 of 1)	RLTR12E|LTR|ERVK	2580.0	NM_001177759	106869.0	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	1.42585522758143	1.1375116284374	1.95542047707062	2.00441142328353	2.16656403243652	1.59423203337584	1.35344552726299	2.28211740235719	0.652037569501977	0.552652984306176	0.959564390599126
Merged-chr8-80969667-4	chr8	80969587	80969787	+	882.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC5|LINE|L1	45219.0	NM_027554	74841.0	Mm.246018	NM_027554	ENSMUSG00000038250	Usp38	4631402N15Rik|4833420O05Rik|AA536967|AU044701|AW544820|mKIAA1891	ubiquitin specific peptidase 38	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-33959986-3	chr13	33959884	33960084	+	934.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040707, exon 5 of 5)	non-coding (NR_040707, exon 5 of 5)	-4675.0	NM_001163239	18105.0	Mm.264036	NM_020282	ENSMUSG00000046949	Nqo2	NMO2|Nmor2|Ox2	N-ribosyldihydronicotinamide quinone reductase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-88633587-4	chr8	88633476	88633676	+	973.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027840, intron 1 of 3)	MTEa|LTR|ERVL-MaLR	2552.0	NM_027840	71607.0	Mm.270607	NM_027840	ENSMUSG00000031662	Snx20	9130017C17Rik	sorting nexin 20	protein-coding	6.48809741735378	6.85579676461992	6.69923478430712	6.69634850754447	4.13052125932476	3.76492710939594	3.91315166552866	3.58730409703663	-3.22179721816182	7.53548277747017e-28	2.26026805910218e-24
Merged-chr5-112315680-1	chr5	112315580	112315780	+	669.5	f1_balb.idr	TTS (NM_001326590)	TTS (NM_001326590)	-10689.0	NM_018783	54723.0	Mm.172947	NM_018783	ENSMUSG00000029345	Tfip11	2810002G02Rik|AF097181|AW046167|Srr1|TIP33|Tip39	tuftelin interacting protein 11	protein-coding	-0.300148755441449	-0.284816235650666	-0.289822371321188	-0.293695933421195	0.533705802615124	-0.283689985433503	-0.28871684229731	0.273100363787045	3.85163386592749	0.12539810773266	1
Merged-chr2-24572155-4	chr2	24572044	24572244	+	806.216675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-96545.0	NM_011040	18510.0	Mm.2533	NM_011040	ENSMUSG00000026976	Pax8	Pax-8	paired box 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-29062394-2	chr19	29062294	29062494	+	838.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-4907.0	NR_045687	100503337.0	Mm.103412	NR_045687		Gm9895	-	predicted gene 9895	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-136548566-3	chr6	136548464	136548664	+	735.866638	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019426, intron 1 of 14)	intron (NM_019426, intron 1 of 14)	29713.0	NM_019426	54343.0	Mm.173271	NM_019426	ENSMUSG00000030213	Atf7ip	2610204M12Rik|AM|Mcaf1	activating transcription factor 7 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-52943878-4	chr2	52943786	52943986	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	86018.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99101212-3	chr7	99101138	99101338	+	883.2333369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 3 of 14)	intron (NM_178635, intron 3 of 14)	39906.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-102532315-3	chr2	102532219	102532419	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17702.0	NM_173749	210622.0	Mm.28649	NM_173749	ENSMUSG00000027188	Pamr1	5930437L24|E430002G05Rik|Ramp	peptidase domain containing associated with muscle regeneration 1	protein-coding	2.53469250514898	3.58270157046731	1.54478400296677	2.77430317097225	1.64031275492343	3.15849133539777	1.79911456933272	1.22242750967168	-1.16079154718264	0.233228237722214	0.728474210976025
Merged-chr3-121571691-4	chr3	121571589	121571789	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39345.0	NM_145394	213603.0	Mm.33062	NM_145394	ENSMUSG00000039865	Slc44a3	BC010552	solute carrier family 44, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-89740945-4	chr13	89740831	89741031	+	949.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081249, intron 1 of 14)	intron (NM_001081249, intron 1 of 14)	1581.0	NM_001081249	13003.0	Mm.158700	NM_019389	ENSMUSG00000021614	Vcan	5430420N07Rik|9430051N09|Cspg2|DPEAAE|NG2|PG-M|PG-M(V0)|PG-M(V1)|hdf	versican	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36573987-4	chr1	36573915	36574115	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001126046, intron 12 of 14)	intron (NM_001126046, intron 12 of 14)	-15634.0	NM_001126047	20353.0	Mm.29558	NM_001126047	ENSMUSG00000026121	Sema4c	AI426163|M-Sema F|Semacl1|Semaf|Semai|sema I	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122833117-2	chr5	122833017	122833217	+	625.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1K|LTR|ERVL-MaLR	-11775.0	NM_001289519	59008.0	Mm.332667	NM_021505	ENSMUSG00000029472	Anapc5	2510006G12Rik|AA408751|AA536819|AA986414|APC5|Anpc5	anaphase-promoting complex subunit 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-98884710-4	chr12	98884611	98884811	+	794.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081191, intron 2 of 43)	intron (NM_001081191, intron 2 of 43)	16773.0	NM_001081191	319670.0	Mm.390484	NM_001081191	ENSMUSG00000051166	Eml5	BC027154|C130068M19Rik	echinoderm microtubule associated protein like 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-17878674-4	chr17	17878570	17878770	+	990.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013521, intron 1 of 1)	L1_Mus4|LINE|L1	5269.0	NM_013521	14293.0	Mm.56951	NM_013521	ENSMUSG00000045551	Fpr1	FPR|LXA4R|fMLF-R	formyl peptide receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-39005853-4	chr8	39005739	39005939	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030254)	promoter-TSS (NM_030254)	-6.0	NM_030254	80286.0	Mm.272722	NM_030254	ENSMUSG00000039530	Tusc3	AU022242|BC003311|N33	tumor suppressor candidate 3	protein-coding	5.39443151817172	4.65384222289848	4.79798628475833	4.48622513889749	4.75642741136918	5.29756276392125	5.1792607930494	5.10623671559935	0.242522680894223	0.478149045661282	0.928092227925527
Merged-chr6-79104811-2	chr6	79104711	79104911	+	648.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4A|LINE|L1	72769.0	NR_040301	100504701.0	Mm.400420	NR_040301	ENSMUSG00000108072	Gm20362	-	predicted gene, 20362	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6354602-2	chr19	6354502	6354702	+	570.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_117093, exon 31 of 31)	non-coding (NR_117093, exon 31 of 31)	8122.0	NR_105955	102465598.0		NR_105955	ENSMUSG00000099230	Mir6989	Gm27885|mmu-mir-6989	microRNA 6989	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-77566899-4	chr10	77566825	77567025	+	810.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14730.0	NM_145925	108705.0	Mm.28853	NM_145925	ENSMUSG00000009291	Pttg1ip	1810010L20Rik|AI314311|AU018448|C79540|PBF	pituitary tumor-transforming 1 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-7313380-3	chr4	7313284	7313484	+	835.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-247304.0	NR_040645	71510.0	Mm.410775	NR_040645	ENSMUSG00000086070	8430436N08Rik	-	RIKEN cDNA 8430436N08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-45686941-4	chr17	45686830	45687030	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198167)	promoter-TSS (NM_198167)	581.0	NM_026732	68463.0	Mm.379158	NM_026732	ENSMUSG00000023939	Mrpl14	1110006I11Rik|AI846816|MRP-L32|Rpml32	mitochondrial ribosomal protein L14	protein-coding	-0.219167622435333	-0.200905234586661	0.623556373849257	-0.211452906971295	-0.218015096292241	-0.199572895519234	0.538722955652117	-0.210645488759364	-0.223709379174966	0.928365796660662	1
Merged-chr10-115372363-1	chr10	115372263	115372463	+	668.0	f0_c57.idr	3' UTR (NM_025780, exon 3 of 3)	3' UTR (NM_025780, exon 3 of 3)	-9862.0	NM_001359472	67226.0	Mm.29647	NM_133683	ENSMUSG00000069520	Tmem19	2810428F02Rik|AW125171	transmembrane protein 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-146057688-1	chr3	146057588	146057788	+	589.0	f1_c57bl6.idr	intron (NM_172864, intron 16 of 22)	Lx7|LINE|L1	50348.0	NM_172864	242253.0	Mm.235040	NM_172864	ENSMUSG00000043020	Wdr63	4931433A13Rik|IC140|Ida7	WD repeat domain 63	protein-coding	1.31066352682959	0.284011529323312	0.274101195204967	1.2783008790634	0.255206103007666	0.286223956825492	0.276300666843909	0.636695502923264	-2.93486834603641	0.140175658980496	1
Merged-chr1-148258818-1	chr1	148258718	148258918	+	598.0	f1_balb.idr	Intergenic	L1Md_F2|LINE|L1	1663621.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-49990491-3	chr18	49990389	49990589	+	942.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177759, intron 1 of 1)	intron (NM_001177759, intron 1 of 1)	11062.0	NM_001177759	106869.0	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-116242058-2	chr8	116241958	116242158	+	726.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-262957.0	NM_029297	75465.0	Mm.23114	NM_029297	ENSMUSG00000034467	Dynlrb2	1700009A04Rik|DNLC2B|Dncl2b	dynein light chain roadblock-type 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-52454098-4	chr12	52453988	52454188	+	892.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26521.0	NR_136881	102638611.0	Mm.363799	NR_136881	ENSMUSG00000111982	Gm35135	-	predicted gene, 35135	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-17701511-1	chr12	17701411	17701611	+	666.0	f1_c57bl6.idr	intron (NM_016677, intron 1 of 3)	intron (NM_016677, intron 1 of 3)	10702.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	-0.539072095141396	-1.17607782048307	-1.18720726126045	-1.19634931528472	-1.20196491063698	-1.17366602423904	-1.18468779981884	-1.19471289198531	-2.68787187143179	0.435473844436726	1
Merged-chr10-128332774-2	chr10	128332674	128332874	+	854.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-4953.0	NM_026444	12974.0	Mm.58836	NM_026444	ENSMUSG00000005683	Cs	2610511A05Rik|9030605P22Rik|Ahl4|BB234005|Cis	citrate synthase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30423996-1	chr7	30423896	30424096	+	708.0	f1_c57bl6.idr	intron (NM_172142, intron 2 of 10)	intron (NM_172142, intron 2 of 10)	721.0	NM_172142	243910.0	Mm.386878	NM_172142	ENSMUSG00000036931	Nfkbid	I-kappa-B-delta|IkappaBNS|ikB-delta	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120149998-3	chr11	120149895	120150095	+	949.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361699, intron 1 of 16)	intron (NM_001361699, intron 1 of 16)	1356.0	NM_001361698	72055.0	Mm.253403	NM_024249	ENSMUSG00000061306	Slc38a10	1810073N04Rik	solute carrier family 38, member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105554309-3	chr8	105554218	105554418	+	704.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013477, intron 1 of 7)	intron (NM_013477, intron 1 of 7)	11746.0	NM_013477	11972.0	Mm.17708	NM_013477	ENSMUSG00000013160	Atp6v0d1	AI267038|Ac39|Atp6d|P39|VATX|Vma6	ATPase, H+ transporting, lysosomal V0 subunit D1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-117420509-2	chr5	117420418	117420618	+	800.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001312914, intron 1 of 19)	ORR1E|LTR|ERVL-MaLR	6516.0	NM_001312914	333050.0	Mm.437947	NM_001034873	ENSMUSG00000061578	Ksr2	-	kinase suppressor of ras 2	protein-coding	0.721961841292808	0.805079890954895	0.582412390233664	1.52305588491917	0.86692596447083	1.13981583297232	0.584693574279602	1.16757359077739	-0.0749354458935241	0.960706596955473	0.998431161219273
Merged-chr14-75832688-2	chr14	75832588	75832788	+	824.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	12276.0	NR_045294	100043189.0	Mm.426329	NR_045294		Gm4285	-	predicted gene 4285	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-80225970-1	chr15	80225870	80226070	+	590.0	f0_balb.idr	Intergenic	B3|SINE|B2	-8110.0	NM_001357659	239555.0	Mm.307163	NM_178719	ENSMUSG00000022412	Mief1	A230016E22|AI452372|Smcr7l	mitochondrial elongation factor 1	protein-coding	2.93546395618199	3.77747026892555	3.55131509336346	4.76913709590508	4.04192610103364	5.29158122723473	4.31071594833683	4.18428577760842	0.808851683928413	0.121344755128242	0.546643694128403
Merged-chr1-186705983-3	chr1	186705855	186706055	+	817.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001329107)	promoter-TSS (NM_001329107)	34.0	NM_009367	21808.0	Mm.18213	NM_009367	ENSMUSG00000039239	Tgfb2	BB105277|Tgf-beta2|Tgfb-2	transforming growth factor, beta 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191643124-4	chr1	191643028	191643228	+	719.366699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	67492.0	NM_001306204	77065.0	Mm.338175	NM_178632	ENSMUSG00000037461	Ints7	5930412E23Rik|int7	integrator complex subunit 7	protein-coding	1.92998138394615	1.3020845248325	0.628396453266999	0.614145031808183	0.593315650247111	2.02126538213495	1.08664367559406	0.616662669163065	-0.0287989617832423	0.985393938981064	0.998431161219273
Merged-chr5-28069370-2	chr5	28069270	28069470	+	553.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2042.0	NM_153526	231070.0	Mm.30221	NM_153526	ENSMUSG00000045294	Insig1	1810013C12Rik|Insig-1	insulin induced gene 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-81317118-2	chr7	81317018	81317218	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008803, intron 13 of 21)	intron (NM_008803, intron 13 of 21)	28116.0	NM_009092	20068.0	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-64831844-4	chr8	64831741	64831941	+	762.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178633, intron 2 of 14)	intron (NM_178633, intron 2 of 14)	18083.0	NM_178633	77113.0	Mm.350347	NM_178633	ENSMUSG00000031605	Klhl2	6030411N21Rik|8530402H02Rik|ABP-KELCH|AU020744|Mav	kelch-like 2, Mayven	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-100188762-2	chr12	100188662	100188862	+	703.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045282, intron 1 of 2)	intron (NR_045282, intron 1 of 2)	794.0	NR_045282	100038378.0	Mm.387075	NR_045282	ENSMUSG00000072884	Gm10433	-	predicted gene 10433	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45413612-3	chr7	45413453	45413653	+	742.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198190)	promoter-TSS (NM_198190)	-142.0	NM_198190	78405.0	Mm.20344	NM_198190	ENSMUSG00000074121	Ntf5	2900040K06Rik|AI462899|NT-4|NT-5|NT4|NT4/5|Ntf-5|Ntf4	neurotrophin 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-16882668-3	chr12	16882552	16882752	+	826.766663	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-12326.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	3.20902247416471	2.48549181451165	1.39003946464624	3.20653875413297	2.80025215629041	1.44469506068626	2.10438597897698	3.02125746096114	-0.520345294498991	0.578483734408532	0.965985075107763
Merged-chr8-14873197-4	chr8	14873104	14873304	+	917.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15332.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-41597668-3	chr13	41597571	41597771	+	795.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-8545.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-37908281-4	chr18	37908168	37908368	+	938.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305980, intron 1 of 27)	intron (NM_001305980, intron 1 of 27)	27208.0	NM_001305981	13367.0	Mm.195916	NM_007858	ENSMUSG00000024456	Diaph1	D18Wsu154e|Dia1|Diap1|Drf1|p140mDia	diaphanous related formin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-142272701-4	chr3	142272537	142272737	+	949.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001190854, intron 8 of 12)	PB1D11|SINE|Alu	-103212.0	NM_001277216	12167.0	Mm.39089	NM_007560	ENSMUSG00000052430	Bmpr1b	AI385617|ALK-6|AV355320|Acvrlk6|Alk6|BMPR-1B|BMPR-IB|CFK-43a|SKR6	bone morphogenetic protein receptor, type 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-89222567-2	chr9	89222467	89222667	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359993, intron 2 of 2)	B1F1|SINE|Alu	11183.0	NM_001359993	107885.0	Mm.486274	NM_026829	ENSMUSG00000066442	Mthfs	1110034I12Rik|2310020H23Rik|AI119695	5, 10-methenyltetrahydrofolate synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-4053785-2	chr11	4053685	4053885	+	835.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11068.0	NM_001029937	380683.0	Mm.296806	NM_001029937	ENSMUSG00000054986	Sec14l3	1110069O07Rik	SEC14-like lipid binding 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-31538436-2	chr10	31538336	31538536	+	891.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001146349, intron 1 of 5)	intron (NM_001146349, intron 1 of 5)	71289.0	NM_001146349	268291.0	Mm.295212	NM_001146349	ENSMUSG00000063760	Rnf217	AU016819|Ibrdc1	ring finger protein 217	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106276622-4	chr11	106276509	106276709	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029467)	promoter-TSS (NM_029467)	-63.0	NM_029467	75870.0	Mm.159608	NM_029467	ENSMUSG00000020712	Tcam1	4930570F09Rik|AI429105	testicular cell adhesion molecule 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-69089967-4	chr8	69089862	69090062	+	967.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153054)	promoter-TSS (NM_153054)	-740.0	NM_153054	110877.0	Mm.19301	NM_153054	ENSMUSG00000036330	Slc18a1	4832416I10Rik|Vat1|Vmat1	solute carrier family 18 (vesicular monoamine), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-23437088-2	chr13	23436988	23437188	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6071.0	NR_015492	320842.0	Mm.487476	NR_015492	ENSMUSG00000085024	C230035I16Rik	-	RIKEN cDNA C230035I16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-105285403-3	chr14	105285293	105285493	+	886.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029561, intron 1 of 7)	Lx8|LINE|L1	26720.0	NM_001190989	76273.0	Mm.290669	NM_029561	ENSMUSG00000053253	Ndfip2	0710001O20Rik|2810436B12Rik|9130207N19Rik|N4wbp5a|mKIAA1165	Nedd4 family interacting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-43671347-1	chr19	43671247	43671447	+	560.0	f1_balb.idr	intron (NM_145156, intron 1 of 3)	intron (NM_145156, intron 1 of 3)	3534.0	NM_145156	246696.0	Mm.23827	NM_145156	ENSMUSG00000040414	Slc25a28	Mfrn2|Mrs3/4	solute carrier family 25, member 28	protein-coding	0.615778339876717	0.475059046023359	1.44140541207223	0.454895196718815	0.442161727162819	0.477581428637034	1.25909058798237	1.30287725704647	0.467254207473148	0.788680261362828	0.998431161219273
Merged-chr12-80114539-4	chr12	80114454	80114654	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1541.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	2.50929454986102	2.47295776867434	2.5108836186232	2.19405432671934	2.10156674893154	3.23976744795732	2.27341237266937	2.20508221290298	0.259610028374868	0.746396239631196	0.998431161219273
Merged-chr14-51063916-4	chr14	51063836	51064036	+	985.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	tRNA-Leu-CTY|tRNA|tRNA	-6694.0	NM_001011875	497106.0	Mm.379740	NM_001011875	ENSMUSG00000068407	Rnase12	Rai1	ribonuclease, RNase A family, 12 (non-active)	protein-coding	4.51246382409327	4.10900334603441	2.53050887725372	4.04113438057444	4.15513350709983	3.14151895077472	3.37766184205991	3.61720967494713	-0.48543030422916	0.396694127442256	0.883358600789196
Merged-chr17-5800330-1	chr17	5800230	5800430	+	1000.0	f0_balb.idr	intron (NR_045080, intron 1 of 1)	intron (NR_045080, intron 1 of 1)	840.0	NR_045080	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91764201-3	chr16	91764108	91764308	+	845.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110276, intron 1 of 15)	intron (NM_001110276, intron 1 of 15)	34837.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4283890-4	chr19	4283796	4283996	+	979.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026720)	promoter-TSS (NM_026720)	-759.0	NM_026720	68423.0	Mm.23642	NM_026720	ENSMUSG00000005986	Ankrd13d	0710001P18Rik|AI430801	ankyrin repeat domain 13 family, member D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-54957151-4	chr11	54957052	54957252	+	881.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199275, intron 1 of 18)	intron (NM_001199275, intron 1 of 18)	5788.0	NM_021327	57783.0	Mm.259671	NM_021327	ENSMUSG00000020400	Tnip1	ABIN|ABIN-1|ABIN1|AU018810|Naf1|Nef|VAN	TNFAIP3 interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-156179627-4	chr2	156179528	156179728	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291115)	promoter-TSS (NM_001291115)	-48.0	NM_001291115	170791.0	Mm.392436	NM_133242	ENSMUSG00000027620	Rbm39	1500012C14Rik|2310040E03Rik|B330012G18Rik|C79248|R75070|Rnpc2|caper	RNA binding motif protein 39	protein-coding	3.96221257014892	3.11416218047208	2.75108280237808	3.45824708104903	3.67403969041092	3.25118803410497	3.65414026033648	2.36887359897874	-0.116839159885592	0.852628807244243	0.998431161219273
Merged-chr16-85114098-4	chr16	85114000	85114200	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198825, intron 2 of 15)	MLT1A|LTR|ERVL-MaLR	59607.0	NM_001198825	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132977009-4	chr4	132976915	132977115	+	983.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010208, intron 1 of 12)	intron (NM_010208, intron 1 of 12)	2920.0	NM_010208	14191.0	Mm.271665	NM_010208	ENSMUSG00000028874	Fgr	-	FGR proto-oncogene, Src family tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-41891516-1	chr10	41891416	41891616	+	764.0	f0_balb.idr	intron (NM_001013370, intron 1 of 9)	intron (NM_001013370, intron 1 of 9)	4077.0	NM_001013370	140742.0	Mm.139418	NM_001013370	ENSMUSG00000038332	Sesn1	1110002G11Rik|AU044290|Pa26|Sest1	sestrin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65522877-4	chr9	65522710	65522910	+	743.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57277.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-4450060-4	chr2	4449943	4450143	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 2 of 23)	intron (NM_001177843, intron 2 of 23)	49067.0	NM_001177843	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-24487171-2	chr13	24487071	24487271	+	686.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	72049.0	NM_001284520	12763.0	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122396999-2	chr5	122396899	122397099	+	895.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_019824, intron 2 of 6)	intron (NM_019824, intron 2 of 6)	5121.0	NM_019824	56378.0	Mm.275942	NM_019824	ENSMUSG00000029465	Arpc3	1110006A04Rik|p21-ARC|p21-Ar|p21Arc	actin related protein 2/3 complex, subunit 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-149678370-4	chr5	149678260	149678460	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081204, exon 1 of 15)	exon (NM_001081204, exon 1 of 15)	103.0	NM_001081204	381694.0	Mm.45060	NM_001081204	ENSMUSG00000051950	B3glct	B3galtl|Gm1057	beta-3-glucosyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-37191080-2	chr10	37190980	37191180	+	827.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4_|SINE|ID	-52154.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-104123259-1	chr2	104123159	104123359	+	1000.0	f1_c57bl6.idr	exon (NM_026634, exon 1 of 2)	exon (NM_026634, exon 1 of 2)	490.0	NM_026634	68243.0	Mm.158191	NM_026634	ENSMUSG00000032671	A930018P22Rik	-	RIKEN cDNA A930018P22 gene	protein-coding	0.409456238188205	1.36202081006313	1.67935614514954	0.428465834039515	0.412330632240365	0.456761654153671	1.42103465357889	0.430425036958445	-1.25030115545152	0.69329724904331	0.997463473581617
Merged-chr11-69667606-2	chr11	69667506	69667706	+	688.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_144958, exon 11 of 11)	exon (NM_144958, exon 11 of 11)	-1436.0	NR_110993	12514.0	Mm.15819	NM_009853	ENSMUSG00000018774	Cd68	Lamp4|Scard1|gp110	CD68 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-12587457-1	chr19	12587357	12587557	+	549.0	f1_balb.idr	exon (NM_001346545, exon 3 of 3)	exon (NM_001346545, exon 3 of 3)	9109.0	NR_015503	74333.0	Mm.329744	NR_015503	ENSMUSG00000086213	A330040F15Rik	-	RIKEN cDNA A330040F15 gene	ncRNA	-0.436351774339413	-0.42093612042277	-0.425954420489964	0.512271847869053	-0.435380813618229	-0.0241521868823882	-0.424844966151527	-0.429165885060899	-1.7918223324162	0.500973809805829	1
Merged-chr13-52100245-4	chr13	52100173	52100373	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045061, intron 3 of 7)	intron (NR_045061, intron 3 of 7)	3532.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-143706879-4	chr7	143706772	143706972	+	996.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199227, intron 7 of 21)	intron (NM_001199227, intron 7 of 21)	-20997.0	NR_131763	79201.0	Mm.290780	NM_024290	ENSMUSG00000037613	Tnfrsf23	SOB|TNFRSFH23|Tnfrh1|Tnfrsf1al1|mDcTRAILR1|mSOB	tumor necrosis factor receptor superfamily, member 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34440023-2	chr17	34439923	34440123	+	566.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163855, intron 9 of 23)	intron (NM_001163855, intron 9 of 23)	35914.0	NM_030746	632126.0	Mm.484958	NM_030746	ENSMUSG00000058435	Btnl4	Btn3a3|EG632126|NG11	butyrophilin-like 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-50528170-3	chr17	50528072	50528272	+	834.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013880, intron 1 of 5)	intron (NM_013880, intron 1 of 5)	18625.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-38571330-3	chr3	38571226	38571426	+	727.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14|LTR|ERV1	-86510.0	NM_001167883	99696.0	Mm.290937	NM_001033198	ENSMUSG00000044864	Ankrd50	AI662170|E430012K20Rik|mKIAA1223|mKIAA3019	ankyrin repeat domain 50	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-74316431-4	chr17	74316378	74316578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146223)	promoter-TSS (NM_001146223)	-45.0	NM_001146223	66310.0	Mm.28536	NM_024428	ENSMUSG00000024067	Dpy30	2810410M20Rik|C87842	dpy-30, histone methyltransferase complex regulatory subunit	protein-coding	1.10181538687919	1.23857769130217	0.803722573857989	1.64086784842712	1.24306837902984	1.9742532675301	1.02517601818943	0.997789331463228	0.536041345323554	0.679824749769583	0.995428038532519
Merged-chr5-66088454-4	chr5	66088354	66088554	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139065, intron 2 of 6)	intron (NM_139065, intron 2 of 6)	9725.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	3.20911333059839	3.07722542993862	2.28825249367734	3.23646713882925	3.62291183787158	3.61758096024663	2.76426526518422	1.5385611221416	0.205510219004652	0.789124585991366	0.998431161219273
Merged-chr16-91769339-2	chr16	91769239	91769439	+	784.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110276, intron 1 of 15)	intron (NM_001110276, intron 1 of 15)	39968.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100822586-4	chr11	100822486	100822686	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011489)	promoter-TSS (NM_011489)	-16.0	NM_011489	20851.0	Mm.34064	NM_011489	ENSMUSG00000020919	Stat5b	-	signal transducer and activator of transcription 5B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-92975501-4	chr7	92975394	92975594	+	912.6166380000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	100241.0	NM_028243	72461.0	Mm.389969	NM_028243	ENSMUSG00000061119	Prcp	2510048K03Rik|2610104A14Rik|AI451719|HUMPCP|PCP	prolylcarboxypeptidase (angiotensinase C)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120713965-2	chr8	120713865	120714065	+	670.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A0|LTR|ERVL-MaLR	-22393.0	NM_008320	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-80366687-3	chr12	80366603	80366803	+	814.277771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177267, intron 6 of 8)	L2a|LINE|L2	24974.0	NR_037207	100526530.0		NR_037207	ENSMUSG00000105972	Mir1843a	Mir1843|mir-1843a|mmu-mir-1843|mmu-mir-1843a	microRNA 1843a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-17691852-3	chr10	17691738	17691938	+	993.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB5|LINE|L1	-31390.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-96975664-2	chr11	96975564	96975764	+	711.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_030220, intron 1 of 6)	intron (NM_030220, intron 1 of 6)	2024.0	NM_030220	78912.0	Mm.491183	NM_030220	ENSMUSG00000018678	Sp2	4930480I16Rik|mKIAA0048	Sp2 transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4064351-2	chr19	4064252	4064452	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MMVL30-int|LTR|ERV1	-4905.0	NM_001362043	225884.0	Mm.440201	NM_144869	ENSMUSG00000058216	Gstp3	-	glutathione S-transferase pi 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-45840041-2	chr13	45839941	45840141	+	838.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199304, intron 3 of 6)	intron (NM_001199304, intron 3 of 6)	124950.0	NM_001199304	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-50413691-2	chr17	50413591	50413791	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-95856.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-106812235-4	chr13	106812095	106812295	+	901.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360897, intron 30 of 30)	intron (NM_001360897, intron 30 of 30)	124763.0	NM_001360897	76582.0	Mm.132208	NM_029665	ENSMUSG00000042590	Ipo11	1700081H05Rik|2510001A17Rik|AI314624|AW555235|E330021B14Rik|Ranbp11	importin 11	protein-coding	1.50751341896836	2.74759774655627	1.17392005416635	1.89528308503758	2.58644337061268	1.69781080683666	1.968465684816	1.76054295812583	0.182287389965877	0.86145203942571	0.998431161219273
Merged-chr2-153492704-4	chr2	153492616	153492816	+	976.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001134300, intron 1 of 10)	CpG	37255.0	NM_001134300	329540.0	Mm.50600	NM_001001986	ENSMUSG00000061411	Nol4l	4931410H15|8430427H17Rik|AI429157|Gm1636	nucleolar protein 4-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-34751642-4	chr18	34751541	34751741	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009860)	promoter-TSS (NM_009860)	-108.0	NM_009860	12532.0	Mm.286602	NM_009860	ENSMUSG00000044201	Cdc25c	Cdc25	cell division cycle 25C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119252781-2	chr11	119252681	119252881	+	835.035706	f1_balb.idr|f1_c57bl6.idr	intron (NM_175430, intron 13 of 18)	intron (NM_175430, intron 13 of 18)	-15182.0	NM_001159324	14387.0	Mm.4793	NM_008064	ENSMUSG00000025579	Gaa	E430018M07Rik	glucosidase, alpha, acid	protein-coding	0.66625043907605	0.0611404553045468	0.371742410816552	0.568545166090023	0.0460890254972389	0.0623290531416998	0.0570340676989774	0.213690286347487	-3.13003540928216	0.134196108966568	1
Merged-chr2-122377478-4	chr2	122377372	122377572	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8554.0	NM_001013829	435684.0	Mm.458215	NM_001013829	ENSMUSG00000033256	Shf	-	Src homology 2 domain containing F	protein-coding	7.02268589372592	7.23821005780693	6.99021237572693	6.92126763591544	7.02293685410862	7.39452784053275	6.83171063100438	6.96726553003804	0.0215202767869771	0.903105752755779	0.998431161219273
Merged-chr4-86931174-1	chr4	86931074	86931274	+	559.0	f1_c57bl6.idr	intron (NM_001290543, intron 5 of 5)	L1Md_F|LINE|L1	56760.0	NM_139306	230379.0	Mm.45019	NM_139306	ENSMUSG00000038007	Acer2	2410116I05Rik|Asah3l|CRG-L1|maCER2	alkaline ceramidase 2	protein-coding	2.85571929350501	2.71431043123185	1.28317931328305	1.24399195295431	1.56182551457681	2.46416626498213	1.01005886467076	0.980977599783136	-1.33827001439829	0.256102187337086	0.754842952097207
Merged-chr17-29767471-2	chr17	29767371	29767571	+	565.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50454.0	NM_001163741	68597.0	Mm.390979	NM_026782	ENSMUSG00000024018	Ccdc167	1110021J02Rik	coiled-coil domain containing 167	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81008867-2	chr10	81008767	81008967	+	792.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010319, intron 1 of 3)	B4A|SINE|B4	6058.0	NM_010319	14708.0	Mm.222496	NM_010319	ENSMUSG00000048240	Gng7	AI840417	guanine nucleotide binding protein (G protein), gamma 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-14545963-1	chr17	14545863	14546063	+	630.166687	f0_c57.idr	Intergenic	Intergenic	-147021.0	NR_027986	74917.0	Mm.32228	NM_183107		4930474M22Rik	-	RIKEN cDNA 4930474M22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-107720921-2	chr13	107720821	107721021	+	756.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33524.0	NR_045900	72257.0	Mm.234155	NR_045900	ENSMUSG00000102000	1700006H21Rik	-	RIKEN cDNA 1700006H21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-137045457-2	chr5	137045357	137045557	+	956.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007457, intron 1 of 4)	intron (NM_007457, intron 1 of 4)	651.0	NM_007457	11769.0	Mm.833	NM_007457	ENSMUSG00000004849	Ap1s1	AP19	adaptor protein complex AP-1, sigma 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-102682355-1	chr2	102682255	102682455	+	846.0	f0_c57.idr	intron (NM_001077514, intron 1 of 10)	intron (NM_001077514, intron 1 of 10)	23666.0	NM_001361018	20511.0	Mm.267547	NM_011393	ENSMUSG00000005089	Slc1a2	1700091C19Rik|2900019G14Rik|AI159670|Eaat2|GLT-1|GLT1|MGLT1	solute carrier family 1 (glial high affinity glutamate transporter), member 2	protein-coding	3.40629720828244	3.68459793634455	1.8076716311738	2.33953382158363	2.71366157311545	3.7106305921897	2.06031438697191	2.85872090581081	-0.0941555705182707	0.905104832329151	0.998431161219273
Merged-chr5-72808664-2	chr5	72808564	72808764	+	834.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013689, intron 3 of 17)	intron (NM_013689, intron 3 of 17)	-55887.0	NM_001122754	22165.0	Mm.3264	NM_013698	ENSMUSG00000054892	Txk	A130089B16Rik|Btkl|PTK-RL-18|PTK4|Rlk	TXK tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-79446974-2	chr15	79446874	79447074	+	786.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4831.0	NM_001359863	27373.0	Mm.30199	NM_013767	ENSMUSG00000022433	Csnk1e	AI426939|AI551861|AW457082|CK1epsilon|CKIe|KC1epsilon|tau	casein kinase 1, epsilon	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124696018-4	chr6	124695917	124696117	+	988.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149320, intron 1 of 11)	intron (NR_149320, intron 1 of 11)	16161.0	NM_013536	14791.0	Mm.6390	NM_013536	ENSMUSG00000004268	Emg1	C2f|Grcc2f	EMG1 N1-specific pseudouridine methyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-85155192-5	chr6	85155082	85155282	+	792.366638	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-17418.0	NM_011467	20751.0	Mm.28393	NM_011467	ENSMUSG00000033735	Spr	AA409688|Gm10328	sepiapterin reductase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-74001468-2	chr3	74001368	74001568	+	726.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	15809.0	NR_040450	100504692.0	Mm.394454	NR_040450	ENSMUSG00000104096	Gm20356	-	predicted gene, 20356	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-8917289-4	chr5	8917190	8917390	+	998.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008830, intron 9 of 27)	intron (NM_008830, intron 9 of 27)	23569.0	NM_008830	18670.0	Mm.297825	NM_008830	ENSMUSG00000042476	Abcb4	Mdr2|Pgy-2|Pgy2|mdr-2	ATP-binding cassette, sub-family B (MDR/TAP), member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-43939494-4	chr1	43939385	43939585	+	811.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009418, intron 1 of 29)	intron (NM_009418, intron 1 of 29)	5491.0	NM_009418	22019.0	Mm.401675	NM_009418	ENSMUSG00000041763	Tpp2	TPP-2|TppII	tripeptidyl peptidase II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-13173195-3	chr15	13173094	13173294	+	733.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007666, intron 1 of 11)	CpG	481.0	NM_007666	12563.0	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-79038333-3	chr8	79038248	79038448	+	829.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001294279, intron 1 of 14)	intron (NM_001294279, intron 1 of 14)	9911.0	NM_178267	622675.0	Mm.48724	NM_178267	ENSMUSG00000071064	Zfp827	2810449M09Rik|D630040G17Rik|Znf827	zinc finger protein 827	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-43223723-3	chr11	43223624	43223824	+	884.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176999, intron 14 of 22)	intron (NM_176999, intron 14 of 22)	73847.0	NM_176999	319767.0	Mm.252339	NM_176999	ENSMUSG00000055415	Atp10b	5930426O13Rik|9030605H24Rik	ATPase, class V, type 10B	protein-coding	1.22291573024805	1.9517972769578	1.63136643163433	1.58708658971389	1.2300723159678	1.53489139570865	1.89864864692262	2.11974000507022	0.390422128823137	0.72119168334735	0.998431161219273
Merged-chr6-56489353-1	chr6	56489253	56489453	+	572.0	f0_balb.idr	Intergenic	Intergenic	-119719.0	NM_001159955	18575.0	Mm.5145	NM_011054	ENSMUSG00000004347	Pde1c	-	phosphodiesterase 1C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-95681507-4	chr9	95681444	95681644	+	999.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029620, exon 5 of 9)	exon (NM_029620, exon 5 of 9)	43916.0	NM_029620	76477.0	Mm.46016	NM_029620	ENSMUSG00000015354	Pcolce2	2400001O18Rik|Pcpe2	procollagen C-endopeptidase enhancer 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-85691482-4	chr11	85691390	85691590	+	979.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138681, intron 24 of 25)	intron (NM_138681, intron 24 of 25)	28254.0	NR_045875	71489.0	Mm.442482	NR_045875	ENSMUSG00000086199	Bcas3os1	8430403D17Rik	breast carcinoma amplified sequence 3, opposite strand 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-121369649-4	chr3	121369549	121369749	+	995.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-56892.0	NM_028044	71994.0	Mm.275555	NM_028044	ENSMUSG00000053931	Cnn3	1600014M03Rik|C85854|Calpo3	calponin 3, acidic	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-43337538-4	chr1	43337441	43337641	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-108210.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-68612079-2	chr14	68611979	68612179	+	734.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_102399, intron 17 of 21)	intron (NR_102399, intron 17 of 21)	-30007.0	NM_021475	58860.0	Mm.36742	NM_021475	ENSMUSG00000022057	Adamdec1	2210414L24Rik|AI574231|Dcsn	ADAM-like, decysin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72237298-2	chr6	72237198	72237398	+	847.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1721.0	NM_153778	71093.0	Mm.87449	NM_153778	ENSMUSG00000037621	Atoh8	4933425C05Rik|Hath6|Math6|bHLHa21|okadin	atonal bHLH transcription factor 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-121875074-1	chr14	121874974	121875174	+	614.0	f1_balb.idr	Intergenic	Intergenic	3196.0	NR_131002	78312.0	Mm.188743	NR_130999	ENSMUSG00000102112	1810041H14Rik	-	RIKEN cDNA 1810041H14 gene	ncRNA	-1.58994551673671	-1.55912852307891	-1.56844783632235	-1.57610299769523	-1.18549093183599	-1.55710898902261	-1.56633814807757	-1.57473272746952	1.78703309985663	0.610309988231842	1
Merged-chr9-90273921-2	chr9	90273821	90274021	+	620.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3152.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	-1.53362919331644	-1.50201671710775	-1.51157659084044	-1.08120497225282	-1.53141005593807	-1.49994505258991	-1.50941244497383	-1.51802371459528	-1.94474658522739	0.577200604274218	1
Merged-chr11-87630044-2	chr11	87629944	87630144	+	729.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001045527, intron 2 of 5)	intron (NM_001045527, intron 2 of 5)	12880.0	NM_001045527	327992.0	Mm.390371	NM_001045527	ENSMUSG00000070345	Hsf5	Gm739|MLZ-220	heat shock transcription factor family member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-9943238-7	chr19	9943207	9943407	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37293.0	NR_073181	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-101146282-3	chr4	101146190	101146390	+	864.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183024, intron 11 of 11)	intron (NM_183024, intron 11 of 11)	77252.0	NM_183024	242570.0	Mm.185636	NM_183024	ENSMUSG00000035275	Raver2	A430091O22Rik	ribonucleoprotein, PTB-binding 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-40743688-2	chr19	40743588	40743788	+	780.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	83918.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-16219249-1	chr14	16219149	16219349	+	582.0	f0_balb.idr	Intergenic	L1MA5|LINE|L1	24082.0	NM_001359883	71147.0	Mm.197960	NM_027695	ENSMUSG00000021786	Oxsm	4933425A18Rik|C80494	3-oxoacyl-ACP synthase, mitochondrial	protein-coding	-0.389070858990261	0.508403509778643	0.118241952956949	-0.382395216078468	-0.38807438222011	-0.372091470892085	-0.377260770950497	-0.381695818131409	-3.78087082022443	0.136856083924779	1
Merged-chr6-35544517-4	chr6	35544422	35544622	+	956.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1I-int|LTR|ERVL-MaLR	-4634.0	NM_008098	14489.0	Mm.182746	NM_008098	ENSMUSG00000029840	Mtpn	5033418D15Rik|Gcdp|V1	myotrophin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-46484737-3	chr17	46484615	46484815	+	779.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162864, intron 1 of 14)	intron (NM_001162864, intron 1 of 14)	2960.0	NM_001162864	106763.0	Mm.297613	NM_175351	ENSMUSG00000015599	Ttbk1	AU017937|AW048023|C330008L01Rik	tau tubulin kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135706047-2	chr5	135705947	135706147	+	601.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008898, intron 1 of 15)	intron (NM_008898, intron 1 of 15)	16902.0	NM_008898	18984.0	Mm.3863	NM_008898	ENSMUSG00000005514	Por	4933424M13Rik|CPR|CYPOR|P450R	P450 (cytochrome) oxidoreductase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-100652396-2	chr13	100652296	100652496	+	715.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001015889, intron 1 of 2)	ID_B1|SINE|B4	789.0	NM_001015889	108143.0	Mm.301148	NM_027139	ENSMUSG00000052293	Taf9	2310012M09Rik|AA673500|AU045423|TAFII31|TAFII32|Taf2g	TATA-box binding protein associated factor 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-69807440-1	chr8	69807340	69807540	+	761.0	f1_c57bl6.idr	exon (NM_133224, exon 26 of 26)	exon (NM_133224, exon 26 of 26)	-1247.0	NM_198101	78816.0	Mm.324305	NM_198101	ENSMUSG00000036246	Gmip	5031419I10Rik	Gem-interacting protein	protein-coding	1.43520318638691	1.74021512402141	1.46140876410934	1.00164333019662	1.23805584340392	0.839589353284893	0.8266188410421	1.42381712199115	-1.306804034673	0.331522765379863	0.832368193155886
Merged-chr13-20783629-2	chr13	20783529	20783729	+	864.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-10484.0	NM_001281854	27052.0	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-60691090-1	chr10	60690990	60691190	+	603.5	f0_balb.idr	intron (NM_001252635, intron 1 of 68)	G-rich|Low_complexity|Low_complexity	5400.0	NM_001252635	22295.0	Mm.440327	NM_023370	ENSMUSG00000012819	Cdh23	4930542A03Rik|USH1D|ahl|ahl1|bob|bus|mdfw|nmf112|nmf181|nmf252|sals|v	cadherin 23 (otocadherin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-36704900-4	chr16	36704812	36705012	+	912.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285788, intron 1 of 7)	intron (NM_001285788, intron 1 of 7)	10934.0	NM_001285791	106347.0	Mm.17807	NM_134109	ENSMUSG00000022900	Ildr1	AU041483|AU044638	immunoglobulin-like domain containing receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-127409051-3	chr3	127408972	127409172	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001327939)	promoter-TSS (NM_001327939)	-14.0	NM_001327939	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128938578-2	chr10	128938478	128938678	+	731.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008398, intron 1 of 24)	intron (NM_008398, intron 1 of 24)	4765.0	NM_001330160	16404.0	Mm.179747	NM_008398	ENSMUSG00000025348	Itga7	[a]7|alpha7	integrin alpha 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-128844357-2	chr4	128844257	128844457	+	816.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-38245.0	NM_001081098	230761.0	Mm.22616	NM_001081098	ENSMUSG00000028799	Zfp362	-	zinc finger protein 362	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3434853-4	chr12	3434752	3434952	+	959.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001270988, intron 1 of 11)	intron (NM_001270988, intron 1 of 11)	7995.0	NM_172421	75302.0	Mm.120475	NM_172421	ENSMUSG00000037486	Asxl2	4930556B16Rik|mKIAA1685	additional sex combs like 2, transcriptional regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-105316162-4	chr13	105316037	105316237	+	731.174988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21652.0	NM_001360891	71816.0	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16927161-1	chr7	16927061	16927261	+	551.0	f1_balb.idr	Intergenic	B2_Mm1a|SINE|B2	-3129.0	NM_007590	12315.0	Mm.288630	NM_007590	ENSMUSG00000019370	Calm3	CaMA|Cam3|Camc|R75142	calmodulin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-18327044-3	chr14	18326939	18327139	+	719.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009455, intron 2 of 5)	CpG	4805.0	NM_009455	22194.0	Mm.4429	NM_009455	ENSMUSG00000021774	Ube2e1	UbcM3|Ubce5|ubcM2	ubiquitin-conjugating enzyme E2E 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-113928098-2	chr9	113927998	113928198	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-2836.0	NM_001083319	22221.0	Mm.28052	NM_013699	ENSMUSG00000009741	Ubp1	Cp2b|LBP-1a|LBP-1b|NF2d9	upstream binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-50001035-3	chr16	50000948	50001148	+	805.333374	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20588.0	NR_045001	628951.0	Mm.428032	NR_045001		Gm6936	-	predicted gene 6936	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-57574044-2	chr8	57573944	57574144	+	900.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001167981, intron 2 of 11)	intron (NM_001167981, intron 2 of 11)	62201.0	NM_008252	97165.0	Mm.276881	NM_008252	ENSMUSG00000054717	Hmgb2	C80539|HMG-2|Hmg2	high mobility group box 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-13446671-2	chr16	13446571	13446771	+	788.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2852.0	NR_030549	100124432.0		NR_030549	ENSMUSG00000076972	Mir193b	Mir193|Mirn193b|mir-193b	microRNA 193b	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-132656277-4	chr7	132656174	132656374	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029609, intron 6 of 6)	intron (NM_029609, intron 6 of 6)	45631.0	NM_029609	76429.0	Mm.276721	NM_029609	ENSMUSG00000030946	Lhpp	2310007H09Rik	phospholysine phosphohistidine inorganic pyrophosphate phosphatase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-160369504-7	chr2	160369558	160369758	+	736.571411	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(GA)n|Simple_repeat|Simple_repeat	-2593.0	NM_010658	16658.0	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-36867151-4	chr14	36867056	36867256	+	894.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52379.0	NM_001347503	72972.0	Mm.27621	NM_027045	ENSMUSG00000058690	Ccser2	1700012P13Rik|2900054P12Rik|AI035535|AW108503|Fam190b|Gcap14	coiled-coil serine rich 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-34629209-4	chr6	34629109	34629309	+	920.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347100, intron 1 of 13)	intron (NM_001347100, intron 1 of 13)	30705.0	NM_001347100	109624.0	Mm.308134	NM_145575	ENSMUSG00000029761	Cald1	4833423D12Rik|AI195384|AV071549|AW536160|C920027I18Rik	caldesmon 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-153749335-4	chr1	153749230	153749430	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011882)	promoter-TSS (NM_011882)	-96.0	NM_011882	24014.0	Mm.259254	NM_011882	ENSMUSG00000066800	Rnasel	E230029I04Rik	ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-26154742-2	chr8	26154642	26154842	+	657.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3427.0	NM_199042	73754.0	Mm.383241	NM_199042	ENSMUSG00000037214	Thap1	4833431A01Rik|AW490810	THAP domain containing, apoptosis associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6992658-4	chr19	6992562	6992762	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357001)	promoter-TSS (NM_001357001)	-80.0	NM_001357000	57431.0	Mm.10721	NM_020566	ENSMUSG00000024963	Dnajc4	Hspf2|Mcg18	DnaJ heat shock protein family (Hsp40) member C4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-122153043-4	chr2	122152942	122153142	+	996.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009735)	TTS (NM_009735)	5355.0	NM_009735	12010.0	Mm.163	NM_009735	ENSMUSG00000060802	B2m	Ly-m11|beta2-m|beta2m	beta-2 microglobulin	protein-coding	3.75213502611829	3.23011840686094	4.04399448844448	3.46305875848355	3.62692453232113	2.53723069356633	2.24567339400545	3.40498991658092	-0.88320631800429	0.154570963041923	0.610069793551649
Merged-chr4-55472813-4	chr4	55472704	55472904	+	923.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-53962.0	NR_040674	100415914.0	Mm.261765	NR_040674	ENSMUSG00000087070	Gm12505	-	predicted gene 12505	ncRNA	4.52912043851857	2.67057988638801	3.16747763538753	4.1881112963356	4.11224626154122	3.53953814740237	4.051836201999	4.34842857292142	0.258736632162455	0.637702971131649	0.982513515234679
Merged-chr12-82470241-4	chr12	82470162	82470362	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-146663.0	NM_001310478	50779.0	Mm.126176	NM_015812	ENSMUSG00000021219	Rgs6	-	regulator of G-protein signaling 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141633988-2	chr7	141633888	141634088	+	790.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001330001)	TTS (NM_001330001)	13287.0	NR_106030	102466798.0		NR_106030	ENSMUSG00000098759	Mir7063	Gm27654|mmu-mir-7063	microRNA 7063	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70548427-2	chr14	70548325	70548525	+	884.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_180588, intron 7 of 7)	intron (NM_180588, intron 7 of 7)	3174.0	NM_180588	72549.0	Mm.46742	NM_180588	ENSMUSG00000033589	Reep4	2700029E10Rik	receptor accessory protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-114913332-2	chr9	114913232	114913432	+	629.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175380, intron 4 of 7)	intron (NM_175380, intron 4 of 7)	20655.0	NM_175380	333433.0	Mm.38198	NM_175380	ENSMUSG00000050627	Gpd1l	2210409H23Rik|D9Ertd660e	glycerol-3-phosphate dehydrogenase 1-like	protein-coding	0.338112590286488	0.893477113629086	1.17155457465435	0.68010456845775	0.339756199467035	0.36600814728228	0.979684393606362	0.350256566495113	-1.45624483438705	0.430582241604899	1
Merged-chr13-66933743-3	chr13	66933663	66933863	+	967.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025547)	promoter-TSS (NM_025547)	-691.0	NM_025547	66410.0	Mm.347939	NM_025547	ENSMUSG00000021519	Mterf3	2410017I18Rik|Mterfd1	mitochondrial transcription termination factor 3	protein-coding	1.0097660325742	0.875668591821968	1.67560364561525	1.81818812537956	1.17625751201637	1.97333858125619	1.43306119114425	0.84783064871951	0.0517592464824617	0.968723317352301	0.998431161219273
Merged-chr8-105622653-4	chr8	105622573	105622773	+	994.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001081241)	TTS (NM_001081241)	7207.0	NR_035492	100316712.0		NR_035492	ENSMUSG00000089432	Mir1966	mir-1966|mmu-mir-1966	microRNA 1966	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-74983240-3	chr14	74983134	74983334	+	936.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_046078, intron 2 of 2)	intron (NR_046078, intron 2 of 2)	8148.0	NR_046078	100043169.0	Mm.145900	NR_046078	ENSMUSG00000115019	Gm4278	-	predicted gene 4278	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-69862262-2	chr2	69862162	69862362	+	661.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009278, intron 1 of 11)	intron (NM_009278, intron 1 of 11)	700.0	NM_009278	20823.0	Mm.10508	NM_009278	ENSMUSG00000068882	Ssb	SS-B	Sjogren syndrome antigen B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-126062835-2	chr4	126062735	126062935	+	763.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172701, intron 1 of 9)	T-rich|Low_complexity|Low_complexity	4270.0	NM_172701	230751.0	Mm.38907	NM_172701	ENSMUSG00000042616	Oscp1	1810007P19Rik|5730415O04|6030436A01Rik	organic solute carrier partner 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-79482421-4	chr14	79482314	79482514	+	980.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007920, intron 1 of 8)	intron (NM_007920, intron 1 of 8)	-1146.0	NM_018765	22380.0	Mm.476813	NM_018765	ENSMUSG00000022023	Wbp4	AW545037|BB101031|FBP21	WW domain binding protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-83768646-1	chr18	83768546	83768746	+	595.0	f1_c57bl6.idr	Intergenic	Intergenic	317916.0	NM_001081300	110796.0	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-62602860-4	chr10	62602776	62602976	+	940.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019553)	promoter-TSS (NM_019553)	-578.0	NM_019553	56200.0	Mm.413275	NM_019553	ENSMUSG00000020075	Ddx21	AI255159|AL022742|D10Ertd645e|D10Wsu42e	DEAD (Asp-Glu-Ala-Asp) box polypeptide 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-149562243-2	chr4	149562143	149562343	+	802.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023465, intron 4 of 4)	intron (NM_023465, intron 4 of 4)	17126.0	NM_001141930	67087.0	Mm.299735	NM_023465	ENSMUSG00000028988	Ctnnbip1	1110008O09Rik|2310001I19Rik|AW457332|Catnbip1|Icat	catenin beta interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55681460-4	chr19	55681361	55681561	+	841.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045318, intron 2 of 3)	MER58B|DNA|hAT-Charlie	20743.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-5797946-1	chr2	5797846	5798046	+	879.5	f0_balb.idr	intron (NM_133837, intron 11 of 12)	intron (NM_133837, intron 11 of 12)	-47088.0	NM_016918	53893.0	Mm.251904	NM_016918	ENSMUSG00000025817	Nudt5	-	nudix (nucleoside diphosphate linked moiety X)-type motif 5	protein-coding	1.06542878514195	1.59801719334469	0.78225736125331	1.37733058612832	1.07381800353629	1.61205015058491	0.785110383890573	1.26446972746891	-0.0933762520574088	0.945599326609722	0.998431161219273
Merged-chr7-89081498-1	chr7	89081398	89081598	+	953.0	f0_balb.idr	Intergenic	MTC|LTR|ERVL-MaLR	257289.0	NM_028343	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-32402994-4	chr16	32402911	32403111	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160402, intron 1 of 4)	intron (NM_001160402, intron 1 of 4)	2505.0	NM_001160402	277203.0	Mm.484240	NM_001160402	ENSMUSG00000079625	Tm4sf19	EG277203	transmembrane 4 L six family member 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-99796111-4	chr12	99796029	99796229	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030172, intron 5 of 5)	intron (NM_030172, intron 5 of 5)	87313.0	NM_030172	78767.0	Mm.235920	NM_030172	ENSMUSG00000021176	Efcab11	2610021K21Rik|2610110A13Rik	EF-hand calcium binding domain 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-111604217-3	chr9	111604123	111604323	+	812.599976	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016853, intron 4 of 10)	intron (NM_016853, intron 4 of 10)	86125.0	NM_016853	20840.0	Mm.1414	NM_016853	ENSMUSG00000032502	Stac	-	src homology three (SH3) and cysteine rich domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-135742671-2	chr1	135742571	135742771	+	660.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153810, intron 2 of 3)	intron (NR_153810, intron 2 of 3)	13504.0	NM_007791	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-85678433-2	chr18	85678333	85678533	+	724.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2A1|LINE|L1	-716519.0	NM_001360910	246317.0	Mm.329578	NM_144946	ENSMUSG00000050321	Neto1	AI851453|Btcl1|C130005O10Rik	neuropilin (NRP) and tolloid (TLL)-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-104041208-4	chr13	104041114	104041314	+	935.6166380000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029447, intron 9 of 12)	intron (NM_029447, intron 9 of 12)	68400.0	NM_029447	75805.0	Mm.127692	NM_029447	ENSMUSG00000021710	Nln	4930472G13Rik|C79345	neurolysin (metallopeptidase M3 family)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-130093015-1	chr10	130092915	130093115	+	615.0	f0_balb.idr	Intergenic	Intergenic	18603.0	NM_146671	258666.0	Mm.377628	NM_146671	ENSMUSG00000058251	Olfr822	MOR113-2	olfactory receptor 822	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-13983038-2	chr13	13982938	13983138	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001362405, intron 5 of 12)	MTC|LTR|ERVL-MaLR	28364.0	NM_178640	97884.0	Mm.21686	NM_178640	ENSMUSG00000039242	B3galnt2	A930105D20Rik|C80633|D230016N13Rik	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43264559-3	chr4	43264479	43264679	+	766.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001310758, exon 39 of 39)	3' UTR (NM_001310758, exon 39 of 39)	-2580.0	NM_177195	320571.0	Mm.74465	NM_177195	ENSMUSG00000028457	Atp8b5	4930417M19Rik|Feta	ATPase, class I, type 8B, member 5	protein-coding	1.81526784761783	2.27537246772974	1.10338490004691	2.02784341280128	1.43756849787838	1.93308856559746	1.10878988652258	2.39168000779134	-0.145662085574632	0.898629064795847	0.998431161219273
Merged-chr17-36025580-2	chr17	36025480	36025680	+	728.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_015618, intron 1 of 1)	intron (NR_015618, intron 1 of 1)	-5020.0	NM_008207	15042.0	Mm.439654	NM_008207	ENSMUSG00000053835	H2-T24	H-2T24	histocompatibility 2, T region locus 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-130731284-2	chr3	130731184	130731384	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026724)	promoter-TSS (NM_026724)	-886.0	NM_001005859	68436.0	Mm.140568	NM_026724	ENSMUSG00000062006	Rpl34	1100001I22Rik	ribosomal protein L34	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-62449890-8	chr10	62449786	62449986	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181423)	promoter-TSS (NM_181423)	-148.0	NM_181423	338359.0	Mm.235898	NM_181423	ENSMUSG00000020079	Supv3l1	6330443E10Rik	suppressor of var1, 3-like 1 (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-40875758-2	chr17	40875652	40875852	+	699.25	f0_c57.idr|f1_c57bl6.idr	3' UTR (NM_027834, exon 2 of 2)	3' UTR (NM_027834, exon 2 of 2)	4806.0	NM_027834	71583.0	Mm.158733	NM_027834	ENSMUSG00000054951	9130008F23Rik	-	RIKEN cDNA 9130008F23 gene	protein-coding	2.21963216067959	2.01503991201254	2.25684856577717	1.61222492507427	0.988036465528104	1.06846417362736	1.04339552248184	2.36443490838312	-1.35914515741563	0.267516169937684	0.770194930470086
Merged-chr10-78457942-4	chr10	78457861	78458061	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172134, intron 1 of 10)	intron (NM_172134, intron 1 of 10)	6987.0	NM_172134	216134.0	Mm.206159	NM_172134	ENSMUSG00000032788	Pdxk	2310036D04Rik|AA119688|C77999	pyridoxal (pyridoxine, vitamin B6) kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-88057285-2	chr17	88057185	88057385	+	707.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081034, intron 1 of 22)	intron (NM_001081034, intron 1 of 22)	7647.0	NM_001348248	225055.0	Mm.386857	NM_001081034	ENSMUSG00000005371	Fbxo11	C80048|Jf	F-box protein 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-118104149-3	chr10	118104041	118104241	+	866.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur2|SINE|Alu	-37646.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-116963283-2	chr2	116963183	116963383	+	595.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	7SK|RNA|RNA	63131.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70344611-1	chr8	70344511	70344711	+	728.0	f1_balb.idr	intron (NM_030680, intron 1 of 23)	intron (NM_030680, intron 1 of 23)	8668.0	NM_030680	19704.0	Mm.258280	NM_030680	ENSMUSG00000058301	Upf1	B430202H16Rik|NORF1|PNORF-1|Rent1|Upflp	UPF1 regulator of nonsense transcripts homolog (yeast)	protein-coding	0.594217052397868	0.202047554493989	0.19423362712673	0.188157073796636	0.894742680195223	0.203799619242103	0.195962952036111	1.14511980570088	2.33091845371756	0.259744963803544	1
Merged-chr10-96616867-4	chr10	96616760	96616960	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007569)	promoter-TSS (NM_007569)	-141.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-12925767-2	chr7	12925667	12925867	+	722.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_009095, exon 4 of 6)	exon (NM_009095, exon 4 of 6)	-1649.0	NM_029809	381845.0	Mm.439896	NM_029809	ENSMUSG00000033967	Rnf225	2310014L17Rik|AV237412|C77118	ring finger protein 225	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-120327907-3	chr1	120327813	120328013	+	620.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12669.0	NM_207233	226359.0	Mm.337409	NM_207233	ENSMUSG00000036907	C1ql2	BC040774|CTRP10	complement component 1, q subcomponent-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-126030350-3	chr2	126030270	126030470	+	714.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029455, intron 11 of 16)	intron (NM_029455, intron 11 of 16)	-4288.0	NM_008008	14178.0	Mm.330557	NM_008008	ENSMUSG00000027208	Fgf7	Kgf	fibroblast growth factor 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-64252904-3	chr9	64252879	64253079	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008927, intron 1 of 10)	intron (NM_008927, intron 1 of 10)	626.0	NM_008927	26395.0	Mm.248907	NM_008927	ENSMUSG00000004936	Map2k1	MAPKK1|MEKK1|Mek1|Prkmk1	mitogen-activated protein kinase kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27699703-4	chr2	27699559	27699759	+	945.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011305, intron 1 of 9)	intron (NM_011305, intron 1 of 9)	-9633.0	NM_001290481	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-59228970-2	chr11	59228869	59229069	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001130408)	promoter-TSS (NM_001130408)	-702.0	NM_007476	11840.0	Mm.371546	NM_007476	ENSMUSG00000048076	Arf1	-	ADP-ribosylation factor 1	protein-coding	1.70939434075104	1.62291441475007	0.917362882175881	1.81114943075623	1.06237468401997	1.34351934825232	1.30099069202959	1.26383202746411	-1.23219940327195	0.319024398876211	0.821951596143819
Merged-chr2-31484412-2	chr2	31484312	31484512	+	664.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_002687, intron 5 of 15)	intron (NR_002687, intron 5 of 15)	14104.0	NR_002687	432466.0	Mm.333323	NR_002687	ENSMUSG00000046687	Gm5424	EG432466	argininosuccinate synthase pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-61549790-4	chr14	61549767	61549967	+	847.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310603, intron 1 of 3)	intron (NM_001310603, intron 1 of 3)	7019.0	NM_025697	66674.0	Mm.282706	NM_025697	ENSMUSG00000021930	Spryd7	6330409N04Rik|Clld6	SPRY domain containing 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-176827087-3	chr1	176826982	176827182	+	938.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357390, intron 3 of 18)	intron (NM_001357390, intron 3 of 18)	9051.0	NR_037996	15365.0	Mm.441435	NR_037996		Hmga2-ps1	EG666235|Gm7996|Hmgic-ps1|[y]i-c	high mobility group AT-hook 2, pseudogene 1	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-79066281-2	chr15	79066181	79066381	+	626.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C|LTR|ERVK	-3422.0	NM_144849	223690.0	Mm.24262	NM_144849	ENSMUSG00000033055	Ankrd54	C730048E16Rik|EST1068184|EST475269|Liar	ankyrin repeat domain 54	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-57776178-2	chr6	57776078	57776278	+	641.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146168, intron 2 of 4)	intron (NM_146168, intron 2 of 4)	48947.0	NM_146168	232023.0	Mm.24642	NM_146168	ENSMUSG00000037788	Vopp1	AW146242|Ecop	vesicular, overexpressed in cancer, prosurvival protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-103857544-3	chr3	103857446	103857646	+	975.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-2249.0	NR_104070	19260.0	Mm.395	NM_008979	ENSMUSG00000027843	Ptpn22	70zpep|PEP|Ptpn8	protein tyrosine phosphatase, non-receptor type 22 (lymphoid)	protein-coding	4.67026081145715	4.89215537311697	5.45165316798658	4.86125948912566	3.25024611024981	2.08081842256854	1.98263090314222	2.35842997808236	-3.44501897091479	3.75711398615302e-10	6.8996714702853e-08
Merged-chr6-97214098-3	chr6	97213977	97214177	+	724.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022992, intron 1 of 2)	B1F|SINE|Alu	3285.0	NM_022992	65106.0	Mm.291014	NM_022992	ENSMUSG00000035199	Arl6ip5	5930404D22Rik|AV001879|Aip-5|Gtrap3-18|addiscin	ADP-ribosylation factor-like 6 interacting protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-43183082-2	chr13	43182982	43183182	+	643.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11581.0	NM_001252640	67046.0	Mm.269213	NM_025935	ENSMUSG00000021368	Tbc1d7	2610009C09Rik	TBC1 domain family, member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-97934056-4	chr3	97933938	97934138	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033779, intron 1 of 1)	intron (NM_001033779, intron 1 of 1)	3865.0	NM_001033779	433632.0	Mm.212421	NM_001033779		Gm5544	EG433632	predicted gene 5544	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-62527646-4	chr17	62527504	62527704	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	353713.0	NM_207654	13640.0	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-20997302-4	chr9	20997219	20997419	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	-5418.0	NM_023167	66163.0	Mm.427576	NM_023167	ENSMUSG00000003299	Mrpl4	1110017G11Rik	mitochondrial ribosomal protein L4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5779500-2	chr19	5779400	5779600	+	569.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8081.0	NR_155264	78891.0	Mm.276063	NM_023912	ENSMUSG00000024941	Scyl1	2810011O19Rik|C85140|Ntkl|mdf|mfd|p105	SCY1-like 1 (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-44811749-4	chr16	44811651	44811851	+	924.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8977.0	NM_207244	239849.0	Mm.445045	NM_207244	ENSMUSG00000062082	Cd200r4	F630107N04Rik|MCD200RLa	CD200 receptor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-58893208-2	chr6	58893108	58893308	+	602.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361966, intron 21 of 25)	intron (NM_001361966, intron 21 of 25)	13918.0	NM_021432	58243.0	Mm.389747	NM_021432	ENSMUSG00000055430	Nap1l5	1110020M21Rik	nucleosome assembly protein 1-like 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128370803-4	chr10	128370694	128370894	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081040)	promoter-TSS (NM_001081040)	-757.0	NM_001081040	210582.0	Mm.296876	NM_001081040	ENSMUSG00000039914	Coq10a	Gm1	coenzyme Q10A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-61486484-1	chr18	61486384	61486584	+	1000.0	f1_c57bl6.idr	Intergenic	Intergenic	-1877.0	NR_045419	442846.0	Mm.417648	NR_045419		A530050N04Rik	-	RIKEN cDNA A530050N04 gene	ncRNA	3.37842483101929	3.43336556477782	2.50812794428392	3.40154457292509	3.83321166323583	4.20679137011831	3.52810974210574	4.20783700255129	1.10162221807404	0.0383716400375984	0.278952589382659
Merged-chr18-65699327-4	chr18	65699224	65699424	+	986.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177028, intron 1 of 14)	intron (NM_177028, intron 1 of 14)	1056.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-66850690-2	chr14	66850590	66850790	+	764.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009955, intron 3 of 13)	MLT1B|LTR|ERVL-MaLR	17910.0	NM_009955	12934.0	Mm.352648	NM_009955	ENSMUSG00000022048	Dpysl2	AI851130|Crmp2|DRP2|Musunc33|TOAD-64|Ulip2	dihydropyrimidinase-like 2	protein-coding	-1.56355737717652	-1.81244775989375	-1.82128546162293	-1.82854501295842	-1.83962066705452	-1.81053259306168	-1.81928479966835	-1.82724555674025	-1.28500227969968	0.715751224811686	1
Merged-chr6-39508228-3	chr6	39508167	39508367	+	896.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172477, exon 3 of 19)	exon (NM_172477, exon 3 of 19)	49567.0	NM_172477	209773.0	Mm.440021	NM_172477	ENSMUSG00000038456	Dennd2a	B930096L08Rik|C130031G22|mKIAA1277	DENN/MADD domain containing 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-79052643-2	chr17	79052543	79052743	+	625.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001316729, intron 1 of 5)	CpG	737.0	NM_001316729	70536.0	Mm.293870	NM_027455	ENSMUSG00000024084	Qpct	5730422A13Rik	glutaminyl-peptide cyclotransferase (glutaminyl cyclase)	protein-coding	2.38614106323286	1.8290800704898	2.11527487442774	2.1890708070569	3.46356101378238	1.31316971830392	1.55266414308757	2.71634930221118	0.902286224815398	0.353380730969482	0.853132398390271
Merged-chr1-59863006-2	chr1	59862906	59863106	+	753.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007561, intron 10 of 12)	B1_Mur3|SINE|Alu	-50000.0	NM_001037725	72750.0	Mm.258250	NM_001037725	ENSMUSG00000041040	Fam117b	2810425F24Rik|6330416D14Rik|Als2cr13	family with sequence similarity 117, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114853291-4	chr11	114853179	114853379	+	982.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_147217, intron 1 of 3)	intron (NM_147217, intron 1 of 3)	1249.0	NM_147217	70355.0	Mm.242413	NM_147217	ENSMUSG00000051043	Gprc5c	1110028I06Rik|3200002M13Rik|Raig3	G protein-coupled receptor, family C, group 5, member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-62426747-3	chr10	62426656	62426856	+	753.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4299.0	NM_145419	216019.0	Mm.213213	NM_145419	ENSMUSG00000020080	Hkdc1	BC016235	hexokinase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-62540954-2	chr10	62540854	62541054	+	892.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-13509.0	NM_001358965	19073.0	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-136890056-2	chr4	136889971	136890171	+	603.5	f0_c57.idr|f1_balb.idr	exon (NM_007574, exon 3 of 3)	exon (NM_007574, exon 3 of 3)	2843.0	NM_007574	12262.0	Mm.439732	NM_007574	ENSMUSG00000036896	C1qc	AI385742|C1qg|Ciqc	complement component 1, q subcomponent, C chain	protein-coding	3.02061939190668	1.72300275404849	2.68421570032303	2.51108470752919	2.40158194455722	1.45848845448551	2.37180713364915	2.79468893436632	-0.472642272006812	0.59411620218107	0.9706660979479
Merged-chr11-118448111-2	chr11	118448011	118448211	+	888.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001204129, exon 4 of 4)	exon (NM_001204129, exon 4 of 4)	4577.0	NM_001204130	56745.0	Mm.23845	NM_019959	ENSMUSG00000017446	C1qtnf1	1600017K21Rik|CTRP1|Zsig37	C1q and tumor necrosis factor related protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-166339313-4	chr1	166339199	166339399	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39868.0	NM_030245	27878.0	Mm.100665	NM_030245	ENSMUSG00000026563	Tada1	2900026B15Rik|D1Ertd251e|Staf42|Tada1l	transcriptional adaptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45814448-4	chr7	45814363	45814563	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001112701)	promoter-TSS (NM_001112701)	-147.0	NM_001112701	19158.0	Mm.272130	NM_011181	ENSMUSG00000003269	Cyth2	ARNO|CLM2|Pscd2	cytohesin 2	protein-coding	7.21701685019266	6.79498639243371	7.08663785740895	6.99337050885664	7.22964822112082	7.27808707227069	7.00968302661379	7.09516219526136	0.126770524858003	0.448488761341495	0.914989884444793
Merged-chr3-135602448-2	chr3	135602348	135602548	+	705.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008689, intron 16 of 24)	intron (NM_008689, intron 16 of 24)	89099.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-94181177-2	chr8	94181077	94181277	+	725.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_013602)	TTS (NM_013602)	2088.0	NM_013602	17748.0	Mm.192991	NM_013602	ENSMUSG00000031765	Mt1	MT-I|Mt-1	metallothionein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91735503-2	chr16	91735403	91735603	+	580.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110276, intron 1 of 15)	intron (NM_001110276, intron 1 of 15)	6132.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-79822278-2	chr7	79822178	79822378	+	765.833374	f1_balb.idr|f1_c57bl6.idr	exon (NM_008486, exon 21 of 21)	exon (NM_008486, exon 21 of 21)	11551.0	NM_008589	17293.0	Mm.31472	NM_008589	ENSMUSG00000030543	Mesp2	bHLHc6	mesoderm posterior 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-154134582-2	chr4	154134482	154134682	+	651.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011642, intron 1 of 13)	RMER1B|Other|Other	5626.0	NM_011642	22062.0	Mm.78015	NM_011642	ENSMUSG00000029026	Trp73	TAp73|Tp73|deltaNp73|p73	transformation related protein 73	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-75643516-2	chr10	75643416	75643616	+	716.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027890, intron 1 of 14)	intron (NM_027890, intron 1 of 14)	492.0	NM_001162913	71733.0	Mm.247956	NM_027890	ENSMUSG00000006342	Susd2	1200011D11Rik	sushi domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128923107-4	chr10	128923004	128923204	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015740, intron 1 of 3)	CpG	420.0	NM_015740	14533.0	Mm.30118	NM_015740	ENSMUSG00000090247	Bloc1s1	AI839753|BLOS1|Gcn5l1	biogenesis of lysosomal organelles complex-1, subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-53269733-2	chr18	53269633	53269833	+	858.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_029394, intron 1 of 6)	intron (NM_029394, intron 1 of 6)	24071.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139295232-2	chr5	139295132	139295332	+	584.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172723, intron 3 of 10)	intron (NM_172723, intron 3 of 10)	30232.0	NM_172723	231821.0	Mm.297819	NM_172723	ENSMUSG00000056413	Adap1	4930431P11Rik|Centa1|GC1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-154332575-1	chr3	154332475	154332675	+	541.0	f0_balb.idr	intron (NR_040387, intron 2 of 2)	intron (NR_040387, intron 2 of 2)	1754.0	NR_040387	99686.0	Mm.38082	NR_040387	ENSMUSG00000093738	AI606473	-	expressed sequence AI606473	ncRNA	0.837179460242061	1.35721289938634	0.412472053399202	0.404153123205627	0.718453081092343	1.37230191535558	0.414831067992704	0.405614073218163	-0.0921149841900582	0.958242636221539	0.998431161219273
Merged-chr2-60369828-4	chr2	60369764	60369964	+	859.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013825, intron 2 of 34)	intron (NM_013825, intron 2 of 34)	13367.0	NM_013825	17076.0	Mm.2074	NM_013825	ENSMUSG00000026980	Ly75	CD205|DEC-205|DEC205	lymphocyte antigen 75	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-35886671-2	chr3	35886571	35886771	+	600.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43403.0	NM_033623	114893.0	Mm.374810	NM_033623	ENSMUSG00000027708	Dcun1d1	Rp42|SCCRO|Tes3|pTes3	DCN1, defective in cullin neddylation 1, domain containing 1 (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-135670561-4	chr1	135670463	135670663	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49500.0	NM_001360782	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-116130382-4	chr3	116130278	116130478	+	951.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011693)	promoter-TSS (NM_011693)	-690.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131690670-4	chr1	131690567	131690767	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145509, intron 1 of 5)	intron (NM_145509, intron 1 of 5)	1972.0	NM_145509	226421.0	Mm.44508	NM_145509	ENSMUSG00000052688	Rab7b	5430435G22Rik	RAB7B, member RAS oncogene family	protein-coding	4.94286888150203	4.11702546050532	4.47361077619303	5.21973793567399	4.77197611882222	3.80106414145527	4.2182047420347	4.37625921776385	-0.520780085567244	0.207247067903302	0.695344049413819
Merged-chr19-40754517-2	chr19	40754417	40754617	+	840.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-76762.0	NM_172839	240665.0	Mm.309	NM_172839	ENSMUSG00000025010	Ccnj	D430039C20Rik	cyclin J	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-130129870-3	chr2	130129756	130129956	+	999.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289747, intron 2 of 13)	ORR1D2|LTR|ERVL-MaLR	6581.0	NM_177726	241636.0	Mm.83437	NM_177726	ENSMUSG00000027403	Tgm6	TGM3L|TGY	transglutaminase 6	protein-coding	3.52910551294032	4.31445237687811	3.09252721250261	3.26195923210943	2.41277064330069	2.73732762031465	2.30646602768019	2.02812558223318	-2.15508518025595	0.00143535426651853	0.0260930007419535
Merged-chr10-110917644-2	chr10	110917544	110917744	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-2532.0	NM_007792	13008.0	Mm.2020	NM_007792	ENSMUSG00000020186	Csrp2	AW551867|Crp2|SmLim	cysteine and glycine-rich protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-99028441-2	chr6	99028341	99028541	+	949.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001197322)	promoter-TSS (NM_001197322)	-143.0	NM_001197322	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-83031078-4	chr15	83030957	83031157	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271411, intron 1 of 5)	intron (NM_001271411, intron 1 of 5)	-1107.0	NM_001271413	74039.0	Mm.32584	NM_028728	ENSMUSG00000058099	Nfam1	4921501M20Rik|Cnaip	Nfat activating molecule with ITAM motif 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-107755319-2	chr13	107755219	107755419	+	730.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 5 of 14)	ORR1A3|LTR|ERVL-MaLR	67922.0	NR_045900	72257.0	Mm.234155	NR_045900	ENSMUSG00000102000	1700006H21Rik	-	RIKEN cDNA 1700006H21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-69978313-2	chr3	69978213	69978413	+	737.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-29300.0	NM_001018031	229389.0	Mm.331071	NM_001018031	ENSMUSG00000027788	Otol1	Gm414	otolin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-61647710-2	chr14	61647610	61647810	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_028264, intron 1 of 6)	intron (NR_028264, intron 1 of 6)	-15600.0	NR_029733	387174.0		NR_029733	ENSMUSG00000093007	Mir15a	Mirn15a|mir-15a|mmu-mir-15a	microRNA 15a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-68941906-2	chr16	68941806	68942006	+	851.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3C|LINE|L1	858475.0	NR_130991	78110.0	Mm.211406	NR_130991	ENSMUSG00000107073	4930428D20Rik	Gm43265	RIKEN cDNA 4930428D20 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-108643681-2	chr12	108643581	108643781	+	847.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163396, intron 2 of 14)	intron (NM_001163396, intron 2 of 14)	7928.0	NM_001163396	14026.0	Mm.238841	NM_007965	ENSMUSG00000021262	Evl	AI528774|b2b2600Clo	Ena-vasodilator stimulated phosphoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-31290965-4	chr16	31290901	31291101	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15724.0	NM_025800	66849.0	Mm.291593	NM_025800	ENSMUSG00000047714	Ppp1r2	0610025N14Rik|2310007G06Rik|4930440J04Rik|5430408E15Rik|D16Ertd248e|I-2|IPP-2	protein phosphatase 1, regulatory (inhibitor) subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-9593988-2	chr13	9593888	9594088	+	562.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081426, intron 17 of 36)	intron (NM_001081426, intron 17 of 36)	169822.0	NM_001347471	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65740779-3	chr9	65740679	65740879	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172536, intron 2 of 9)	intron (NM_172536, intron 2 of 9)	64231.0	NM_001301307	18247.0	Mm.116749	NM_010952	ENSMUSG00000040652	Oaz2	AZ-2|AZ2|Oaz2-ps|Sez15	ornithine decarboxylase antizyme 2	protein-coding	1.43234501722469	2.49694083045408	1.27791881494198	2.44587721381045	3.05787895481256	2.38366354686476	1.56769615279941	3.21249987432971	1.39735201117296	0.147345019362323	0.597466522728415
Merged-chr15-62069118-2	chr15	62069018	62069218	+	545.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_132746, intron 1 of 6)	MIRc|SINE|MIR	29861.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-16703074-2	chr1	16702977	16703177	+	851.333374	f0_c57.idr|f1_c57bl6.idr	intron (NM_001159711, intron 3 of 4)	intron (NM_001159711, intron 3 of 4)	14621.0	NM_001159711	17087.0	Mm.116844	NM_016923	ENSMUSG00000025779	Ly96	ESOP-1|MD-2|MD2	lymphocyte antigen 96	protein-coding	5.09940746509674	3.91440261321374	4.37680685279453	4.91275503072444	3.34714974136899	2.601933573354	3.24999273333813	1.94546682112674	-2.46201828053577	7.96668804377113e-06	0.00038030897804708
Merged-chr6-128604675-4	chr6	128604572	128604772	+	978.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18262.0	NM_001159902	17057.0	Mm.16729	NM_010737	ENSMUSG00000030361	Klrb1a	Ly55a|NKR-P1.7|NKR-P1A|NKRP12|Nkrp1-a|Nkrp1a|ly-55A	killer cell lectin-like receptor subfamily B member 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-22388725-2	chr9	22388625	22388825	+	903.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028390, intron 1 of 23)	intron (NM_028390, intron 1 of 23)	481.0	NM_028390	68743.0	Mm.282751	NM_028390	ENSMUSG00000036777	Anln	1110037A17Rik|2900037I21Rik|C78101|Scraps	anillin, actin binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-126031968-2	chr4	126031868	126032068	+	712.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252651, intron 5 of 14)	intron (NM_001252651, intron 5 of 14)	7309.0	NM_001252651	12986.0	Mm.271701	NM_007782	ENSMUSG00000028859	Csf3r	Cd114|Csfgr|G-CSF-R|G-CSFR	colony stimulating factor 3 receptor (granulocyte)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43043312-3	chr4	43043178	43043378	+	816.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045567, intron 1 of 7)	B1_Mus2|SINE|Alu	2942.0	NR_045567	230088.0	Mm.260162	NM_172691	ENSMUSG00000036002	Fam214b	B230312A22Rik	family with sequence similarity 214, member B	protein-coding	1.55010885104596	1.89072522606155	2.28775904595047	0.939898112335127	1.95745767411179	0.982105802197629	1.708713585399	0.942835143546947	-0.819735370207304	0.527148010229261	0.948839578239191
Merged-chr10-127544322-2	chr10	127544222	127544422	+	809.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 76 of 88)	intron (NM_008512, intron 76 of 88)	-9763.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-6149243-2	chr7	6149143	6149343	+	585.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013012, intron 1 of 2)	intron (NM_001013012, intron 1 of 2)	6728.0	NM_001013012	67109.0	Mm.3254	NM_001013012	ENSMUSG00000046792	Zfp787	2210018M03Rik|Znf787	zinc finger protein 787	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-152826783-2	chr2	152826683	152826883	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009743, intron 2 of 2)	intron (NM_009743, intron 2 of 2)	1706.0	NR_149254	12048.0	Mm.238213	NM_009743	ENSMUSG00000007659	Bcl2l1	Bcl(X)L|Bcl-XL|Bcl2l|BclX|bcl-x|bcl2-L-1	BCL2-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-99179882-4	chr9	99179778	99179978	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39667.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-53528891-3	chr18	53528754	53528954	+	885.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033281, intron 2 of 6)	B3|SINE|B2	64308.0	NM_001033281	225518.0	Mm.297645	NM_001033281	ENSMUSG00000069378	Prdm6	Gm92|PRISM	PR domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-138442474-4	chr5	138442374	138442574	+	854.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028130, intron 1 of 4)	intron (NM_028130, intron 1 of 4)	998.0	NM_028130	72154.0	Mm.20263	NM_028130	ENSMUSG00000036898	Zfp157	2610020C11Rik|A630094N24Rik|AI327407|Roma|mszf12|mszf23-1	zinc finger protein 157	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-103050517-2	chr11	103050417	103050617	+	782.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008707, intron 3 of 11)	RCHARR1|DNA|hAT-Charlie	21974.0	NM_008707	18107.0	Mm.10265	NM_008707	ENSMUSG00000020936	Nmt1	AW536594	N-myristoyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-44453713-2	chr11	44453607	44453807	+	660.25	f1_balb.idr|f1_c57bl6.idr	TTS (NM_024475)	TTS (NM_024475)	16841.0	NM_024475	79560.0	Mm.338784	NM_024475	ENSMUSG00000041231	Ublcp1	4930527B16Rik|8430435I17Rik|BC002236	ubiquitin-like domain containing CTD phosphatase 1	protein-coding	-0.445664740374777	-0.432019464463207	-0.436478799576531	-0.439926613869361	-0.444809992427831	0.218373343468718	0.167663661209964	-0.43932382301046	3.66041457442724	0.164045677725726	1
Merged-chr10-62886117-4	chr10	62886003	62886203	+	821.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253857, intron 1 of 12)	PB1D9|SINE|Alu	1221.0	NM_001253857	52463.0	Mm.17774	NM_027384	ENSMUSG00000047146	Tet1	2510010B09Rik|AA517754|BB001228|Cxxc6|D10Ertd17e|LCX|mKIAA1676	tet methylcytosine dioxygenase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-3472647-2	chr11	3472547	3472747	+	867.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_028317, intron 2 of 3)	intron (NR_028317, intron 2 of 3)	-9657.0	NR_037301	100499518.0		NR_037301	ENSMUSG00000095323	Mir3470a	mmu-mir-3470a	microRNA 3470a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-76531005-4	chr16	76530890	76531090	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17805.0	NR_155449	102632730.0		NR_155449		Gm30726	-	predicted gene, 30726	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-43676008-2	chr7	43675908	43676108	+	695.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145582, intron 2 of 2)	intron (NM_145582, intron 2 of 2)	3977.0	NM_145582	233189.0	Mm.26514	NM_145582	ENSMUSG00000038888	Ctu1	Atpbd3|BC005752	cytosolic thiouridylase subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-100531326-2	chr9	100531226	100531426	+	719.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010878, intron 1 of 3)	HAL1|LINE|L1	14808.0	NM_010878	17973.0	Mm.181485	NM_010878	ENSMUSG00000032475	Nck1	6330586M15Rik|D230010O13Rik|Nck|Nck-1	non-catalytic region of tyrosine kinase adaptor protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-99209378-2	chr5	99209278	99209478	+	726.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43549.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-74576027-4	chr11	74575916	74576116	+	999.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001015046, intron 1 of 24)	intron (NM_001015046, intron 1 of 24)	14142.0	NM_001015046	380711.0	Mm.425690	NM_001015046	ENSMUSG00000038807	Rap1gap2	AU067654|Garnl4|Gm1561|mKIAA1039	RAP1 GTPase activating protein 2	protein-coding	2.83740151245519	2.97843088767763	2.10006974713553	3.83964519036092	2.86200761384416	3.00110072876155	2.1179543285647	3.8578887173934	0.0342309142936832	0.963208991259283	0.998431161219273
Merged-chr17-78248587-7	chr17	78248476	78248676	+	712.238098	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015800, intron 2 of 16)	intron (NM_015800, intron 2 of 16)	48328.0	NM_015800	50766.0	Mm.311912	NM_015800	ENSMUSG00000024074	Crim1	AU015004	cysteine rich transmembrane BMP regulator 1 (chordin like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-31184686-4	chr6	31184581	31184781	+	972.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110470, intron 1 of 2)	intron (NR_110470, intron 1 of 2)	33793.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-122874478-4	chr6	122874365	122874565	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026267)	promoter-TSS (NM_026267)	-92.0	NM_026267	67602.0	Mm.288114	NM_026267	ENSMUSG00000030327	Necap1	1200016B17Rik|AI747569|mFLJ00061	NECAP endocytosis associated 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-4959350-1	chr18	4959250	4959450	+	561.0	f0_balb.idr	Intergenic	Intergenic	-87239.0	NM_153153	225115.0	Mm.136791	NM_153153	ENSMUSG00000024236	Svil	AU024053|B430302E16Rik	supervillin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-31929077-3	chr16	31928997	31929197	+	924.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4754.0	NM_172822	239827.0	Mm.440388	NM_172822	ENSMUSG00000045625	Pigz	F630022B06Rik	phosphatidylinositol glycan anchor biosynthesis, class Z	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-52591083-4	chr2	52590979	52591179	+	886.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037099, intron 2 of 13)	intron (NM_001037099, intron 2 of 13)	-32468.0	NM_001285427	12298.0	Mm.330223	NM_146123	ENSMUSG00000017412	Cacnb4	3110038O15Rik|Cchb4|lh	calcium channel, voltage-dependent, beta 4 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-86139883-2	chr15	86139783	86139983	+	775.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_145475, exon 13 of 13)	3' UTR (NM_145475, exon 13 of 13)	-45845.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-92936065-2	chr4	92935965	92936165	+	654.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur2|LINE|L1	399446.0	NM_026954	69136.0	Mm.171558	NM_026954	ENSMUSG00000054000	Tusc1	2200001D17Rik|TSG-9	tumor suppressor candidate 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-33007791-3	chr19	33007690	33007890	+	973.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-149322.0	NR_039552	100628575.0		NR_039552	ENSMUSG00000106278	Mir3970	mmu-mir-3970|mu-mir-3970	microRNA 3970	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-29293376-2	chr5	29293276	29293476	+	877.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_020295, intron 5 of 16)	intron (NM_020295, intron 5 of 16)	85014.0	NM_020295	56873.0	Mm.41572	NM_020295	ENSMUSG00000010721	Lmbr1	1110048D14Rik|AU017641	limb region 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-36019397-2	chr17	36019297	36019497	+	616.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008207, intron 1 of 5)	MLT2C1|LTR|ERVL	1163.0	NM_008207	15042.0	Mm.439654	NM_008207	ENSMUSG00000053835	H2-T24	H-2T24	histocompatibility 2, T region locus 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-93938651-4	chr16	93938545	93938745	+	805.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019500, intron 2 of 2)	intron (NM_019500, intron 2 of 2)	-8828.0	NM_001165926	56173.0	Mm.328716	NM_019500	ENSMUSG00000047109	Cldn14	AI851731	claudin 14	protein-coding	2.41453740970121	2.07785475239058	1.37409471152087	2.92683019900487	2.24361869728848	1.90733907325354	2.54120313462214	2.64655205111167	0.0775579624176848	0.932271374810229	0.998431161219273
Merged-chr2-166452725-2	chr2	166452626	166452826	+	886.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_015558, intron 1 of 2)	ORR1B2|LTR|ERVL-MaLR	5275.0	NR_015558	319684.0	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3594692-1	chr19	3594592	3594792	+	594.0	f1_balb.idr	intron (NM_008513, intron 18 of 22)	intron (NM_008513, intron 18 of 22)	-18943.0	NM_028999	52036.0	Mm.284686	NM_028999	ENSMUSG00000024908	Ppp6r3	4930528G08Rik|9130026N02Rik|D19Bwg1430e|D19Ertd703e|Pp6r3|Ppcs3|Pptcs3|Sapl|Saps3|mKIAA1558	protein phosphatase 6, regulatory subunit 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-44989961-4	chr14	44989840	44990040	+	857.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008964, intron 1 of 1)	intron (NM_008964, intron 1 of 1)	1829.0	NM_008964	19217.0	Mm.4630	NM_008964	ENSMUSG00000037759	Ptger2	EP2|Ptgerep2	prostaglandin E receptor 2 (subtype EP2)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-88727924-3	chr5	88727826	88728026	+	921.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026735, intron 1 of 5)	L1MC4|LINE|L1	7055.0	NM_026735	68473.0	Mm.35764	NM_026735	ENSMUSG00000006262	Mob1b	1110003E08Rik|AU015450|B230364F10|Mobkl1a	MOB kinase activator 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-22026625-4	chr13	22026579	22026779	+	987.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8964.0	NM_175659	319168.0	Mm.250564	NM_175659	ENSMUSG00000069302	Hist1h2ah	-	histone cluster 1, H2ah	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36359295-4	chr18	36359176	36359376	+	998.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081365, intron 1 of 2)	intron (NM_001081365, intron 1 of 2)	10652.0	NM_001081365	66060.0	Mm.272527	NM_001081365	ENSMUSG00000046727	Cystm1	0610010O12Rik	cysteine-rich transmembrane module containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-104628629-1	chr9	104628529	104628729	+	711.0	f1_c57bl6.idr	intron (NM_028719, intron 1 of 15)	B4A|SINE|B4	59146.0	NM_028719	74020.0	Mm.326240	NM_028719	ENSMUSG00000032564	Cpne4	3632411M23Rik|4933406O10Rik	copine IV	protein-coding	2.62295493506381	2.04086540301058	1.26794891115878	0.777962459237683	0.977559719200558	0.824606720199472	1.06579389405189	1.40446505265056	-2.47352777641793	0.058007784519231	0.356207967075077
Merged-chr17-29459750-3	chr17	29459653	29459853	+	746.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31292.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	0.864426850115729	0.38530793050509	0.566137288542411	1.28936751102445	0.361662576837993	0.596260655722725	0.378915895785088	0.829775052222466	-1.53891143756648	0.377986614871104	1
Merged-chr8-108576958-3	chr8	108576867	108577067	+	718.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_077224, intron 1 of 1)	intron (NR_077224, intron 1 of 1)	7710.0	NR_077224	109215.0	Mm.65282	NR_077224	ENSMUSG00000110613	Lncbate1	3010033K07Rik|Lnc-BATE1	brown adipose tissue enriched long non-coding RNA 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-58566908-4	chr4	58566794	58566994	+	917.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13403.0	NM_010336	14745.0	Mm.4772	NM_010336	ENSMUSG00000038668	Lpar1	AI326300|Edg2|Gpcr26|Kdt2|lpA1|vzg-1	lysophosphatidic acid receptor 1	protein-coding	2.45632350305253	3.57991422458842	2.03357593249035	2.8176905886756	1.88128183608586	3.60524853809094	2.92500268779498	2.83266330183297	0.167295776499579	0.829552026530526	0.998431161219273
Merged-chr16-45375987-3	chr16	45375875	45376075	+	983.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33078.0	NM_001358443	17470.0	Mm.245851	NM_010818	ENSMUSG00000022661	Cd200	Mox2|OX2	CD200 antigen	protein-coding	-0.920746059108256	-0.900210136228289	-0.910868657888965	-0.914546390428102	-0.919816208124075	0.187426340199569	-0.909824961773136	-0.913900867410677	3.55267203040657	0.234146038776258	1
Merged-chr10-111108124-2	chr10	111108024	111108224	+	735.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56678.0	NM_001003717	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-54477452-2	chr1	54477349	54477549	+	831.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001163314, exon 27 of 27)	3' UTR (NM_001163314, exon 27 of 27)	-38423.0	NM_001033194	98488.0	Mm.25856	NM_001033194	ENSMUSG00000041303	Gtf3c3	TF3C-gamma|TFIIIC102	general transcription factor IIIC, polypeptide 3	protein-coding	-0.953721354153451	-1.41025554057125	-1.42001056191158	-1.42802362688808	-1.44024889148474	-1.40814158675276	-1.41780223890411	-1.42658929208844	-2.11310844444413	0.543369238581748	1
Merged-chr17-34105692-2	chr17	34105592	34105792	+	663.083374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10383.0	NR_046183	414076.0	Mm.473092	NR_046183	ENSMUSG00000098197	BC051537	-	cDNA sequence BC051537	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-9505183-6	chr18	9505075	9505275	+	984.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55021.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101058083-2	chr11	101057983	101058183	+	927.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001243049, intron 20 of 20)	intron (NM_001243049, intron 20 of 20)	-12011.0	NM_013792	27419.0	Mm.95452	NM_013792	ENSMUSG00000001751	Naglu	-	alpha-N-acetylglucosaminidase (Sanfilippo disease IIIB)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-64424645-2	chr13	64424545	64424745	+	768.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4a1|LINE|L1	-7908.0	NM_053180	105278.0	Mm.74982	NM_053180	ENSMUSG00000021483	Cdk20	4932702G04Rik|AU019450|AW558027|CDCH|Ccrk|PNQLARE|p42	cyclin-dependent kinase 20	protein-coding	-2.18292257394068	-2.15545247547656	-2.03304972317742	-2.17058342868585	-2.18099422382073	-2.1536522739386	-2.16187909550322	-2.16936197735154	-0.683654500252594	0.846597994014493	1
Merged-chr5-86063514-2	chr5	86063414	86063614	+	784.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001345903, intron 1 of 19)	Lx5|LINE|L1	2069.0	NM_001345902	12617.0	Mm.4649	NM_007683	ENSMUSG00000029253	Cenpc1	CENP-C|Cenpc	centromere protein C1	protein-coding	1.5116465983639	1.68008225630262	2.06321710326267	1.4449696728461	1.52271960775076	1.53437281881058	1.76835125177639	1.59196849803807	-0.317837343757242	0.763190714743889	0.998431161219273
Merged-chr4-133839475-2	chr4	133839375	133839575	+	729.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35256.0	NM_001285506	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-6171171-2	chr7	6171071	6171271	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1342.0	NM_028316	72667.0	Mm.274089	NM_028316	ENSMUSG00000044876	Zfp444	2810031J10Rik|6230401O10Rik|mFLJ00134	zinc finger protein 444	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-115601921-4	chr6	115601824	115602024	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023290)	promoter-TSS (NM_023290)	-14.0	NM_023290	67027.0	Mm.101316	NM_023290	ENSMUSG00000000439	Mkrn2	2610002L04Rik|C81377	makorin, ring finger protein, 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-4635601-1	chr18	4635501	4635701	+	547.0	f1_c57bl6.idr	intron (NM_001081963, intron 1 of 3)	intron (NM_001081963, intron 1 of 3)	672.0	NM_001081963	240185.0	Mm.33179	NM_001081963	ENSMUSG00000033960	Jcad	1110056P05Rik|9430020K01Rik|Gm328|mKIAA1462	junctional cadherin 5 associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-80038303-3	chr11	80038217	80038417	+	730.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42674.0	NM_001277106	54394.0	Mm.272093	NM_018776	ENSMUSG00000017561	Crlf3	BB164954|Creme9|Cytor4	cytokine receptor-like factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-9189293-3	chr13	9189185	9189385	+	871.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB3|LINE|L1	-87240.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-48816968-4	chr9	48816890	48817090	+	869.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033324, intron 2 of 6)	MIR3|SINE|MIR	18955.0	NM_001033324	235320.0	Mm.457803	NM_001033324	ENSMUSG00000066687	Zbtb16	AI467657|PLZF|Zfp145|lu	zinc finger and BTB domain containing 16	protein-coding	3.37233336070682	3.32078715908655	3.0932278417099	4.13292049533526	3.4004605339774	3.94944584791021	2.85687306471221	4.19752791730099	0.224052332646445	0.694883836090962	0.997870549741095
Merged-chr1-161497492-4	chr1	161497405	161497605	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183391, intron 1 of 2)	MIR|SINE|MIR	2848.0	NM_183391	240873.0	Mm.276823	NM_183391	ENSMUSG00000066755	Tnfsf18	Gitrl|Tnlg2a	tumor necrosis factor (ligand) superfamily, member 18	protein-coding	4.66217297210509	4.92883686560177	4.56276885678715	3.69831393272163	4.26321404687529	4.73929859365878	4.89346102885067	3.7993986697652	-0.0612009415609587	0.886656622204871	0.998431161219273
Merged-chr12-85477938-4	chr12	85477846	85478046	+	996.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010234)	TTS (NM_010234)	4056.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-121561242-2	chr9	121561142	121561342	+	719.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25778.0	NR_040740	75384.0	Mm.445955	NR_040740	ENSMUSG00000084995	Lyzl4os	4930589B17Rik|4930596M17Rik	lysozyme-like 4, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36564341-2	chr1	36564241	36564441	+	596.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_027957, exon 5 of 6)	exon (NM_027957, exon 5 of 6)	-5960.0	NM_001126047	20353.0	Mm.29558	NM_001126047	ENSMUSG00000026121	Sema4c	AI426163|M-Sema F|Semacl1|Semaf|Semai|sema I	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-95821380-2	chr15	95821275	95821475	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 1 of 19)	ORR1A2|LTR|ERVL-MaLR	8697.0	NR_155277	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3859672-2	chr12	3859572	3859772	+	613.833313	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045884, exon 4 of 4)	non-coding (NR_045884, exon 4 of 4)	2572.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99375841-2	chr7	99375740	99375940	+	951.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5678.0	NM_001362168	233552.0	Mm.286317	NM_201352	ENSMUSG00000035314	Gdpd5	BC024955|Gde2	glycerophosphodiester phosphodiesterase domain containing 5	protein-coding	0.596619449916377	0.970838455617058	0.335860857108132	1.06574546352931	0.603695430551672	0.547231677875549	0.337490591388301	0.331147549495372	-2.05370767162669	0.251782372909344	1
Merged-chr1-113072-1	chr1	112972	113172	+	1000.0	f1_c57bl6.idr	Intergenic	Intergenic	3558426.0	NM_001011874	497097.0	Mm.454496	NM_001011874	ENSMUSG00000051951	Xkr4	AY534250|Gm210|XRG4|mKIAA1889	X-linked Kx blood group related 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-129351330-4	chr6	129351225	129351425	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177686, intron 1 of 5)	RSINE1|SINE|B4	1081.0	NM_177686	232413.0	Mm.90241	NM_177686	ENSMUSG00000053063	Clec12a	CLL-1|D230024O04|KLRL1|Micl	C-type lectin domain family 12, member a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-34190688-1	chr10	34190588	34190788	+	663.0	f0_balb.idr	intron (NM_172508, intron 1 of 5)	intron (NM_172508, intron 1 of 5)	16863.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6481602-4	chr19	6481518	6481718	+	894.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205234, intron 10 of 22)	intron (NM_001205234, intron 10 of 22)	61452.0	NM_009203	20521.0	Mm.391146	NM_009203	ENSMUSG00000061742	Slc22a12	AI987855|OAT4L|Rst|Slc22al2|URAT1	solute carrier family 22 (organic anion/cation transporter), member 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-135054232-1	chr6	135054132	135054332	+	556.0	f1_balb.idr	Intergenic	Intergenic	-11430.0	NM_181444	232431.0	Mm.23575	NM_181444	ENSMUSG00000046733	Gprc5a	Rai3|Raig1	G protein-coupled receptor, family C, group 5, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34065673-2	chr17	34065527	34065727	+	611.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009926, intron 63 of 63)	intron (NM_009926, intron 63 of 63)	26489.0	NM_001317722	12815.0	Mm.20230	NM_009926	ENSMUSG00000024330	Col11a2	-	collagen, type XI, alpha 2	protein-coding	-0.324602071114597	-0.778475245042255	-0.33360137421374	-0.78384742906004	-0.787139562736673	-0.777299700783557	-0.780842354194113	-0.783439682930647	-3.09252491007168	0.294506589172968	1
Merged-chr17-55718864-4	chr17	55718704	55718904	+	941.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-6168.0	NR_151542	72836.0	Mm.177073	NM_028370	ENSMUSG00000024174	Pot1b	2810458H16Rik	protection of telomeres 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-57651753-3	chr8	57651641	57651841	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040698)	promoter-TSS (NR_040698)	-12.0	NR_040698	100502619.0	Mm.393851	NR_040698		AW046200	-	expressed sequence AW046200	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-7211622-4	chr10	7211530	7211730	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172546, intron 1 of 12)	CpG	607.0	NM_172546	215748.0	Mm.37984	NM_172546	ENSMUSG00000015202	Cnksr3	6820402C05|BC024086|Magi1	Cnksr family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125095344-2	chr6	125095244	125095444	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145979)	promoter-TSS (NM_145979)	-637.0	NM_001346610	107932.0	Mm.333388	NM_145979	ENSMUSG00000063870	Chd4	9530019N15Rik|AA617397|BC005710|D6Ertd380e|Mi-2beta|mKIAA4075	chromodomain helicase DNA binding protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71966426-1	chr17	71966326	71966526	+	730.0	f0_balb.idr	intron (NM_007439, intron 9 of 28)	intron (NM_007439, intron 9 of 28)	184479.0	NM_030179	78785.0	Mm.196382	NM_030179	ENSMUSG00000024059	Clip4	1700024K14Rik|1700074B05Rik|4833417L20Rik|5830409B12Rik|Rsnl2	CAP-GLY domain containing linker protein family, member 4	protein-coding	-1.22315906685268	-1.19557143632602	-1.20673282037136	-0.55836125556573	-1.22265483704505	-1.19315271784257	-1.20420612767407	-1.21425999345206	-2.67891099987134	0.437057736398543	1
Merged-chr11-50430342-4	chr11	50430193	50430393	+	840.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172557, intron 1 of 17)	intron (NM_172557, intron 1 of 17)	818.0	NM_172557	216724.0	Mm.390400	NM_172557	ENSMUSG00000020375	Rufy1	3000002E04Rik|Rabip4|ZFYVE12	RUN and FYVE domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-44449965-6	chr10	44449898	44450098	+	898.8472289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007548, intron 3 of 6)	intron (NM_007548, intron 3 of 6)	8750.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-25412690-10	chr15	25412578	25412778	+	980.7333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027395, intron 1 of 1)	CpG	1086.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-20181826-3	chr14	20181702	20181902	+	994.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021542)	promoter-TSS (NM_021542)	-20.0	NM_021542	16529.0	Mm.68998	NM_021542	ENSMUSG00000023243	Kcnk5	KCNK5b|TASK-2	potassium channel, subfamily K, member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-26798162-3	chr10	26798054	26798254	+	970.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176837, intron 1 of 14)	intron (NM_176837, intron 1 of 14)	25642.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-30842847-4	chr10	30842748	30842948	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013904)	promoter-TSS (NM_013904)	-65.0	NM_013904	15214.0	Mm.103573	NM_013904	ENSMUSG00000019789	Hey2	CHF1|Herp1|Hrt2|bHLHb32|hesr2	hairy/enhancer-of-split related with YRPW motif 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-146797298-2	chr5	146797211	146797411	+	869.5	f0_c57.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-2355.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	2.9615409575146	3.19278823930459	3.00988989802258	2.76377037070432	2.45926093307602	1.3292205438269	1.28614025658904	1.24723956587725	-2.77938316984187	0.00380700471084959	0.0541190077260347
Merged-chr1-92773822-2	chr1	92773722	92773922	+	833.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4B|LINE|L1	-57823.0	NM_016696	14733.0	Mm.297976	NM_016696	ENSMUSG00000034220	Gpc1	AI462976	glypican 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-27659784-4	chr15	27659673	27659873	+	999.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198301, intron 5 of 6)	intron (NM_198301, intron 5 of 6)	21769.0	NM_001242424	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-18239241-4	chr14	18239106	18239306	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011584)	promoter-TSS (NM_011584)	-100.0	NM_011584	353187.0	Mm.26587	NM_011584	ENSMUSG00000021775	Nr1d2	RVR|Rev-erb	nuclear receptor subfamily 1, group D, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135801684-4	chr4	135801585	135801785	+	834.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085509, intron 27 of 36)	intron (NM_001085509, intron 27 of 36)	41970.0	NM_001085509	242702.0	Mm.318639	NM_001085509	ENSMUSG00000037139	Myom3	8430427K15Rik|Gm434	myomesin family, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-98727503-2	chr15	98727403	98727603	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001357893, exon 1 of 5)	5' UTR (NM_001357893, exon 1 of 5)	124.0	NM_001357893	66120.0	Mm.30729	NM_024169	ENSMUSG00000003355	Fkbp11	1110002O23Rik|FKBP-11	FK506 binding protein 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-180067650-2	chr2	180067550	180067750	+	696.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_178750, exon 11 of 11)	3' UTR (NM_178750, exon 11 of 11)	-2943.0	NM_001083328	52856.0	Mm.219658	NM_028422	ENSMUSG00000039069	Mtg2	1810011P19Rik|2900056P18Rik|D2Bwg0647e|Gtpbp5	mitochondrial ribosome associated GTPase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26514017-2	chr17	26513918	26514118	+	862.375	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5546.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	-0.29274777496832	-0.275117421143404	-0.280847034588839	0.0547724155780315	-0.125995189498384	0.727408654089778	-0.279579550828693	-0.284518472663566	2.21260059103812	0.3510992389501	1
Merged-chr4-109143602-3	chr4	109143505	109143705	+	885.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346502, intron 3 of 23)	intron (NM_001346502, intron 3 of 23)	-5692.0	NM_001355190	100273.0	Mm.366315	NM_133885	ENSMUSG00000028559	Osbpl9	2600011I06Rik|AU015843|Orp-9	oxysterol binding protein-like 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-71187588-4	chr9	71187501	71187701	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110517, intron 5 of 5)	intron (NR_110517, intron 5 of 5)	18825.0	NR_110517	102635087.0	Mm.444536	NR_110517	ENSMUSG00000111429	Gm32511	-	predicted gene, 32511	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-125277649-2	chr5	125277549	125277749	+	759.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001205082, exon 12 of 12)	3' UTR (NM_001205082, exon 12 of 12)	63445.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-53825689-2	chr1	53825589	53825789	+	585.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001883, intron 28 of 28)	MTD|LTR|ERVL-MaLR	-23735.0	NR_106149	102465783.0		NR_106149	ENSMUSG00000098443	Mir7681	Gm27806|mmu-mir-7681	microRNA 7681	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171610959-1	chr1	171610859	171611059	+	648.666687	f1_c57bl6.idr	Intergenic	Intergenic	-3549.0	NM_001277968	17085.0	Mm.560	NM_008534	ENSMUSG00000004707	Ly9	AI893573|CD229|Lgp100|Ly-9|SLAMF3|T100	lymphocyte antigen 9	protein-coding	1.01812592568171	0.402711203099276	0.847056764924488	0.919593580119964	0.382531382889359	0.599196131414329	0.39721919050692	0.696856958359277	-1.92583781120739	0.275443593174554	1
Merged-chr18-84859622-4	chr18	84859527	84859727	+	917.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001348159, intron 1 of 5)	(CCCCCA)n|Simple_repeat|Simple_repeat	8289.0	NM_001348159	109672.0	Mm.31018	NM_025797	ENSMUSG00000024646	Cyb5a	0610009N12Rik|Cyb5	cytochrome b5 type A (microsomal)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-36898626-1	chr6	36898526	36898726	+	951.0	f0_balb.idr	intron (NM_001347104, intron 27 of 32)	intron (NM_001347104, intron 27 of 32)	-88447.0	NM_008973	19242.0	Mm.279690	NM_008973	ENSMUSG00000029838	Ptn	HARP|HB-GAM|HBBM|HBBN|HBGF-8|HBNF|OSF|Osf-1|Osf1	pleiotrophin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33917244-2	chr16	33917144	33917344	+	553.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 9 of 14)	intron (NM_001145884, intron 9 of 14)	49794.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167905094-2	chr2	167904994	167905194	+	700.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-27233.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-89977969-2	chr11	89977836	89978036	+	810.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	24958.0	NM_008796	18559.0	Mm.5062	NM_008796	ENSMUSG00000020553	Pctp	PC-TP|StarD2	phosphatidylcholine transfer protein	protein-coding	3.94751531755812	2.05841287360792	3.06000213248192	3.04324053667934	2.57567393519971	1.27051629365088	1.22108980870651	1.17619135860394	-2.88384542677648	0.00348859576035169	0.0505916663167199
Merged-chr15-67173287-4	chr15	67173204	67173404	+	989.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009177, intron 1 of 8)	MER44A|DNA|TcMar-Tigger	3578.0	NM_009177	20442.0	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	0.685534172880496	1.70832607115536	0.716921787054736	1.23412633310462	0.87606956652062	1.48625595670557	1.83628062976581	0.707326999230655	0.538829972146022	0.716503349343681	0.998431161219273
Merged-chr2-180258131-2	chr2	180258031	180258231	+	678.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_037274)	TTS (NR_037274)	595.0	NR_037274	100526556.0		NR_037274	ENSMUSG00000092827	Mir3091	mir-3091|mmu-mir-3091	microRNA 3091	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-3147045-2	chr11	3146946	3147146	+	1000.0	f0_balb.idr|f1_balb.idr	intron (NM_030207, intron 14 of 32)	B3|SINE|B2	23025.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-20329864-4	chr11	20329744	20329944	+	840.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018861, intron 1 of 7)	intron (NM_018861, intron 1 of 7)	2869.0	NM_018861	55963.0	Mm.6379	NM_018861	ENSMUSG00000020142	Slc1a4	ASCT-1|ASCT1|AW045657|SATT	solute carrier family 1 (glutamate/neutral amino acid transporter), member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-41600471-4	chr8	41600457	41600657	+	845.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-183439.0	NM_013522	14300.0	Mm.217312	NM_013522	ENSMUSG00000031590	Frg1	-	FSHD region gene 1	protein-coding	4.45723898496031	4.20603186250119	3.56276279794009	2.01668620877318	4.5549125361087	4.35150784582825	3.59157249965776	3.47711447502249	0.327246452304416	0.588074904271552	0.968410553480753
Merged-chr6-65144793-4	chr6	65144680	65144880	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019455)	promoter-TSS (NM_019455)	-50.0	NM_019455	54486.0	Mm.410688	NM_019455	ENSMUSG00000029919	Hpgds	H-PGDS|Ptgds2	hematopoietic prostaglandin D synthase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-70661439-4	chr2	70661331	70661531	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027352)	promoter-TSS (NM_027352)	-78.0	NR_027343	70231.0	Mm.271950	NM_027352	ENSMUSG00000014959	Gorasp2	0610011A07Rik|2410043M02Rik|5730520M13Rik|9430094F20Rik|AW552058|GOLPH2|GRASP55|GRS2|p59	golgi reassembly stacking protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-52760573-3	chr5	52760521	52760721	+	853.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028744, intron 7 of 9)	intron (NM_028744, intron 7 of 9)	-14788.0	NM_001309445	78796.0	Mm.266886	NM_030185	ENSMUSG00000029179	Zcchc4	4930449I23Rik	zinc finger, CCHC domain containing 4	protein-coding	3.37567101609357	3.79250714147801	3.5903729298864	2.11403906365122	3.76845229673334	4.49365843876647	3.95730492958842	1.60138496277181	0.641730735039373	0.379781203149525	0.871899780487614
Merged-chr1-63176775-4	chr1	63176793	63176993	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001160039)	promoter-TSS (NM_001160039)	62.0	NM_018796	55949.0	Mm.2718	NM_018796	ENSMUSG00000025967	Eef1b2	2810017J07Rik|Eef1b	eukaryotic translation elongation factor 1 beta 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-3151209-3	chr11	3151059	3151259	+	983.055542	f0_balb.idr|f1_balb.idr	intron (NM_030207, intron 14 of 32)	intron (NM_030207, intron 14 of 32)	27138.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-36102752-2	chr2	36102609	36102809	+	595.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355125, intron 4 of 8)	intron (NM_001355125, intron 4 of 8)	1351.0	NM_001083126	16874.0	Mm.12881	NM_008500	ENSMUSG00000026890	Lhx6	Lhx6.1	LIM homeobox protein 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-67481906-4	chr15	67481793	67481993	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	255124.0	NR_045140	69334.0	Mm.63770	NR_045140	ENSMUSG00000102069	1700012I11Rik	-	RIKEN cDNA 1700012I11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-61149804-2	chr10	61149704	61149904	+	554.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2120.0	NM_001316674	20397.0	Mm.412319	NM_009163	ENSMUSG00000020097	Sgpl1	AI428538|D10Xrf456|S1PL|Spl	sphingosine phosphate lyase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124481721-4	chr6	124481607	124481807	+	835.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11406.0	NM_181344	232371.0	Mm.132974	NM_181344	ENSMUSG00000038527	C1rl	C1r-LP|C1rl1|C1rlp	complement component 1, r subcomponent-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16100664-4	chr7	16100561	16100761	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025898, intron 1 of 10)	intron (NM_025898, intron 1 of 10)	2081.0	NM_025898	108124.0	Mm.104540	NM_025898	ENSMUSG00000006024	Napa	1500039N14Rik|AW209189|RA81|SNAP-alpha|SNAPA|SNARE|a-SNAP|hyh	N-ethylmaleimide sensitive fusion protein attachment protein alpha	protein-coding	2.30933941236202	2.35697194573513	2.58285321600243	2.10121365818178	2.13179165690053	2.4896296410351	2.03123816065728	1.9771425355362	-0.443949142940991	0.595482273179851	0.971139446851758
Merged-chr3-59265054-4	chr3	59264958	59265158	+	969.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177855, exon 36 of 44)	exon (NM_177855, exon 36 of 44)	-2073.0	NM_001357010	70839.0	Mm.422675	NM_027571	ENSMUSG00000036353	P2ry12	2900079B22Rik|4921504D23Rik|P2Y12	purinergic receptor P2Y, G-protein coupled 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-27114826-4	chr14	27114705	27114905	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-29188.0	NM_001289686	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	3.73195358206773	3.72189942442382	3.90505976378492	4.68258745003136	3.33692379638561	3.4491701973497	4.2387457116112	3.94617827872261	-0.399376227953395	0.424000464688904	0.901126164738568
Merged-chr7-132858406-3	chr7	132858284	132858484	+	850.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198017)	promoter-TSS (NM_198017)	-841.0	NM_198017	109359.0	Mm.274824	NM_198017	ENSMUSG00000030965	Abraxas2	AA589499|AI853413|Abro1|C430003P19Rik|Fam175b	BRISC complex subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135544585-3	chr5	135544480	135544680	+	731.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146001, intron 1 of 30)	intron (NM_146001, intron 1 of 30)	542.0	NM_146001	215114.0	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-86501768-4	chr1	86501673	86501873	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24784.0	NR_153834	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-96543522-3	chr13	96543442	96543642	+	906.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_012048)	promoter-TSS (NM_012048)	807.0	NM_023420	68018.0	Mm.24125	NM_023420	ENSMUSG00000021669	Col4a3bp	2810404O15Rik|9230101K08Rik|AU016711|CERT|GPBP	collagen, type IV, alpha 3 (Goodpasture antigen) binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-26866787-4	chr3	26866714	26866914	+	981.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029150, intron 5 of 10)	RMER19B|LTR|ERVK	229183.0	NM_027583	70862.0	Mm.330943	NM_027583	ENSMUSG00000039335	Spata16	4921511F01Rik|4930503K02Rik|Nyd-sp12	spermatogenesis associated 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-95849965-4	chr15	95849880	95850080	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253813, intron 2 of 20)	intron (NM_001253813, intron 2 of 20)	-19908.0	NR_155276	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-31950440-4	chr12	31950357	31950557	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361928)	promoter-TSS (NM_001361928)	-212.0	NM_001361928	73389.0	Mm.390461	NM_153198	ENSMUSG00000002996	Hbp1	1700058O05Rik|BE629963|C330012F01Rik|C86454	high mobility group box transcription factor 1	protein-coding	6.31237808383366	6.24135141672405	6.31121505735163	6.06786222291314	6.3767579111183	6.39326515224061	6.47801462931489	6.09264971708602	0.112730433796804	0.587790387136675	0.968220700072259
Merged-chr8-56071011-4	chr8	56070906	56071106	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080438, intron 5 of 9)	RLTR28|LTR|ERVL	130181.0	NM_080438	110304.0	Mm.307061	NM_080438	ENSMUSG00000038257	Glra3	-	glycine receptor, alpha 3 subunit	protein-coding	4.42166742545805	5.06685061314261	4.76070285460528	5.0612181387582	4.13074527808409	4.65891743658153	3.76973844071532	4.38462085391003	-0.726926680143844	0.0596071050006252	0.361560184933014
Merged-chr1-185350528-2	chr1	185350426	185350626	+	799.0	f0_balb.idr|f1_balb.idr	intron (NM_001347210, intron 7 of 9)	intron (NM_001347210, intron 7 of 9)	-12518.0	NM_029735	107508.0	Mm.154511	NM_029735	ENSMUSG00000026615	Eprs	2410081F06Rik|3010002K18Rik|C79379|Qprs	glutamyl-prolyl-tRNA synthetase	protein-coding	0.873099787979465	1.68887895564766	1.14113102938475	0.898229245956949	1.23638711253296	1.94662968599271	1.7626711052446	1.99088131651602	2.01583078187741	0.113151448151753	0.52650449242973
Merged-chr3-96587577-1	chr3	96587477	96587677	+	589.0	f1_balb.idr	intron (NM_027241, intron 1 of 7)	ORR1D1|LTR|ERVL-MaLR	6604.0	NM_027241	69870.0	Mm.292739	NM_027241	ENSMUSG00000028104	Polr3gl	2010003I19Rik	polymerase (RNA) III (DNA directed) polypeptide G like	protein-coding	-1.10384998116487	-1.07946603826229	-1.09181520747217	-1.09984628216847	-1.10325314425446	-1.07678992177872	-1.08901962624914	-0.315793331868817	3.00679100283758	0.36959816332642	1
Merged-chr11-19027398-3	chr11	19027304	19027504	+	983.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-8435.0	NM_010789	17268.0	Mm.356578	NM_010789	ENSMUSG00000020160	Meis1	C530044H18Rik|Evi8	Meis homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-30380710-3	chr10	30380609	30380809	+	944.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-180169.0	NM_001109747	66311.0	Mm.251779	NM_001109747	ENSMUSG00000075266	Cenpw	2610036L11Rik|Cug2	centromere protein W	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30269444-3	chr2	30269264	30269464	+	732.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252571, intron 1 of 9)	B4A|SINE|B4	2545.0	NM_001252570	227696.0	Mm.297949	NM_172267	ENSMUSG00000079484	Phyhd1	-	phytanoyl-CoA dioxygenase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-144923167-3	chr7	144923073	144923273	+	824.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357868, intron 4 of 4)	intron (NM_001357868, intron 4 of 4)	8073.0	NM_001347537	72284.0	Mm.273049	NM_028184	ENSMUSG00000031072	Oraov1	2210010N10Rik|TAOS1	oral cancer overexpressed 1	protein-coding	1.24928781765115	0.863601411996855	1.59053248956172	1.63574234638597	1.25954612898769	1.41734707857298	0.85354049031454	1.3239045727188	-0.57414180196272	0.664063973476144	0.99179745482574
Merged-chr6-81446269-4	chr6	81446164	81446364	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	449399.0	NR_106091	102465711.0		NR_106091	ENSMUSG00000106154	Mir7232	mmu-mir-7232	microRNA 7232	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-37542505-3	chr17	37542412	37542612	+	826.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT2D|LTR|ERVL	12555.0	NM_001005485	545205.0	Mm.383371	NM_001005485	ENSMUSG00000090675	Olfr111	-	olfactory receptor 111	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-118245122-4	chr5	118245009	118245209	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172998)	promoter-TSS (NM_172998)	-84.0	NM_001109902	269695.0	Mm.320042	NM_172998	ENSMUSG00000032850	Rnft2	AW049082|B830028P19Rik|Tmem118	ring finger protein, transmembrane 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95624342-1	chr3	95624242	95624442	+	651.333313	f0_c57.idr	promoter-TSS (NM_019561)	promoter-TSS (NM_019561)	-638.0	NM_019561	56205.0	Mm.241365	NM_019561	ENSMUSG00000038619	Ensa	1700020C18Rik|2610007F17Rik|AI451924	endosulfine alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-36695742-4	chr15	36695636	36695836	+	975.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	-86763.0	NM_008774	18458.0	Mm.371570	NM_008774	ENSMUSG00000022283	Pabpc1	PABP|Pabp1|PabpI|Pabpl1|ePAB	poly(A) binding protein, cytoplasmic 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123391552-4	chr5	123391447	123391647	+	949.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20C2_MM|LTR|ERVK	-3251.0	NM_133917	208104.0	Mm.83277	NM_133917	ENSMUSG00000038342	Mlxip	AW228700|Mir|bHLHe36	MLX interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118619130-4	chr9	118619028	118619228	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 1 of 27)	intron (NM_133721, intron 1 of 27)	12419.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-40322750-4	chr1	40322652	40322852	+	834.895813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1837.0	NM_001356478	107527.0	Mm.155583	NM_133193	ENSMUSG00000070942	Il1rl2	AI481289|AW551444|IL-1Rrp2	interleukin 1 receptor-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-34098618-4	chr11	34098496	34098696	+	757.270874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_155520)	promoter-TSS (NR_155520)	-42.0	NR_155520	76874.0	Mm.437529	NR_155520		4930469K13Rik	-	RIKEN cDNA 4930469K13 gene	ncRNA	1.07793702405034	0.830225261290066	1.27588518980456	0.63746783630001	1.08809367244782	0.835390561772725	0.958441514879009	0.792621388973768	-0.324243648336649	0.823218527995724	1
Merged-chr1-155471541-3	chr1	155471450	155471650	+	821.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54106.0	NM_011273	19775.0	Mm.266215	NM_011273	ENSMUSG00000026469	Xpr1	Rmc-1|Rmc1|Sxv|Syg1|XR	xenotropic and polytropic retrovirus receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-40286073-3	chr8	40286021	40286221	+	802.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030610, intron 1 of 2)	intron (NM_030610, intron 1 of 2)	832.0	NM_030610	80857.0	Mm.425526	NM_030610	ENSMUSG00000031603	Fgf20	-	fibroblast growth factor 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83703385-2	chr11	83703285	83703485	+	573.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081957)	promoter-TSS (NM_001081957)	-671.0	NM_001081957	100034251.0	Mm.24097	NM_001081957	ENSMUSG00000069792	Wfdc17	Amwap|Gm11428	WAP four-disulfide core domain 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191990184-4	chr1	191990081	191990281	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8453.0	NR_039566	100628582.0		NR_039566	ENSMUSG00000093003	Mir3473c	mmu-mir-3473c	microRNA 3473c	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-37537925-2	chr13	37537824	37538024	+	870.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	192579.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	0.519613965165314	1.02255451385959	0.386739452414496	0.819240816156682	0.372383487353765	0.909255639898599	0.864428109532568	0.38184364946656	-0.299545741775327	0.863667703649368	1
Merged-chr1-152521529-2	chr1	152521429	152521629	+	700.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 16 of 17)	intron (NM_016846, intron 16 of 17)	103688.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-52078627-2	chr11	52078527	52078727	+	581.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166654, intron 13 of 13)	L1MC5|LINE|L1	-20197.0	NM_019411	19052.0	Mm.260288	NM_019411	ENSMUSG00000020349	Ppp2ca	PP2A|R75353	protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131913970-2	chr1	131913847	131914047	+	775.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145804, intron 1 of 6)	B2_Mm1a|SINE|B2	3489.0	NM_175294	98415.0	Mm.246869	NM_175294	ENSMUSG00000026434	Nucks1	2700010L10Rik|8430423A01Rik|AI647518|C78391|Nucks	nuclear casein kinase and cyclin-dependent kinase substrate 1	protein-coding	-1.107570214359	-1.08653447535648	-1.09741130683982	-0.688779236681923	-0.841983873845991	-1.08417742060026	-1.09494903060535	-1.10420625070982	-0.619773806471497	0.851573714113283	1
Merged-chr16-49797076-1	chr16	49796976	49797176	+	618.0	f0_c57.idr	Intergenic	ERV3-16A3_LTR|LTR|ERVL	-58578.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-181691815-4	chr2	181691731	181691931	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291205)	promoter-TSS (NM_001291205)	-14.0	NM_001291205	56470.0	Mm.274366	NM_026446	ENSMUSG00000002458	Rgs19	2610042F04Rik|AI324841|AW547781|GAIP	regulator of G-protein signaling 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-35123194-2	chr9	35123094	35123294	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_029475, intron 2 of 5)	intron (NR_029475, intron 2 of 5)	-6330.0	NM_009178	20443.0	Mm.275973	NM_009178	ENSMUSG00000032038	St3gal4	SIAT4-C|ST3Gal IV|ST3GalIV|Siat4c	ST3 beta-galactoside alpha-2,3-sialyltransferase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-23985542-4	chr16	23985450	23985650	+	963.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009744, intron 1 of 9)	intron (NM_009744, intron 1 of 9)	3302.0	NM_009744	12053.0	Mm.347398	NM_009744	ENSMUSG00000022508	Bcl6	Bcl5	B cell leukemia/lymphoma 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-74992840-3	chr15	74992699	74992899	+	912.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5232.0	NM_001271417	110454.0	Mm.425949	NM_010738	ENSMUSG00000075602	Ly6a	Ly-6A.2|Ly-6A/E|Ly-6E.1|Sca-1|Sca1|TAP	lymphocyte antigen 6 complex, locus A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-86446181-2	chr17	86446081	86446281	+	700.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011104, intron 2 of 14)	intron (NM_011104, intron 2 of 14)	-159003.0	NR_045435	72104.0	Mm.443401	NR_045435	ENSMUSG00000100738	2010106C02Rik	-	RIKEN cDNA 2010106C02 gene	ncRNA	0.79630200312747	0.244771632300404	0.238020806986305	0.232798965751919	0.375582008239506	0.24629081803535	0.828021089475949	0.88194372802358	1.27312274586723	0.513998467466716	1
Merged-chr2-77343422-3	chr2	77343294	77343494	+	873.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62802.0	NM_175465	228071.0	Mm.27120	NM_175465	ENSMUSG00000042272	Sestd1	1500031J16Rik|A930010O20|Solo/Trio8	SEC14 and spectrin domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-25150761-2	chr9	25150661	25150861	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_020586, intron 1 of 7)	intron (NM_020586, intron 1 of 7)	1020.0	NM_020586	80517.0	Mm.142843	NM_020586	ENSMUSG00000008429	Herpud2	5031400M07Rik|AB041580	HERPUD family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-86654696-4	chr6	86654583	86654783	+	986.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010751, intron 3 of 5)	intron (NM_010751, intron 3 of 5)	14476.0	NM_010751	17119.0	Mm.279580	NM_010751	ENSMUSG00000001156	Mxd1	AW122478|Mad|Mad1	MAX dimerization protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-136799105-4	chr3	136799003	136799203	+	858.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008913, intron 2 of 13)	intron (NM_008913, intron 2 of 13)	129037.0	NM_001293622	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-45575204-2	chr17	45575104	45575304	+	843.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1943.0	NM_008302	15516.0	Mm.2180	NM_008302	ENSMUSG00000023944	Hsp90ab1	90kDa|AL022974|C81438|Hsp84|Hsp84-1|Hsp90|Hspcb	heat shock protein 90 alpha (cytosolic), class B member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124758468-2	chr6	124758368	124758568	+	664.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1981.0	NM_007881	13498.0	Mm.333380	NM_007881	ENSMUSG00000004263	Atn1	Atr1|Drpla|atrophin-1	atrophin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-5509340-4	chr11	5509254	5509454	+	925.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-11287.0	NM_013842	22433.0	Mm.469937	NM_013842	ENSMUSG00000020484	Xbp1	D11Ertd39e|TREB-5|TREB5|XBP-1	X-box binding protein 1	protein-coding	-0.480234816921505	0.539957290279535	-0.469299174365969	-0.126132722145525	-0.479211082363715	-0.462863001036998	-0.46813572977444	-0.472670635035348	-3.77202838811114	0.140536341741367	1
Merged-chr16-33835724-2	chr16	33835624	33835824	+	798.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 1 of 14)	intron (NM_001145884, intron 1 of 14)	6059.0	NM_001145884	16419.0	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64234357-4	chr5	64234250	64234450	+	937.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 1 of 18)	L2a|LINE|L2	3993.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-173003032-1	chr2	173002932	173003132	+	713.0	f1_c57bl6.idr	intron (NM_175112, intron 2 of 11)	intron (NM_175112, intron 2 of 11)	2915.0	NM_175112	66679.0	Mm.4113	NM_175112	ENSMUSG00000027509	Rae1	3230401I12Rik|D2Ertd342e|MNRP|MNRP41	ribonucleic acid export 1	protein-coding	0.72508670576166	0.270115382671739	0.935007621642395	0.793493979230163	0.525228172996505	0.271606680365961	0.264954521962923	0.259269918796129	-2.69538180030662	0.17132152786851	1
Merged-chr19-37474557-4	chr19	37474460	37474660	+	968.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	9306.0	NR_131009	78640.0	Mm.234265	NR_131008		1700122C19Rik	-	RIKEN cDNA 1700122C19 gene	ncRNA	3.01877895849677	2.35466901323483	2.81914592025283	2.36779712318634	2.80941042031959	3.60635281470139	2.84108758688859	2.75421048585464	0.689046146441315	0.321497943635562	0.823903365381149
Merged-chr7-80192499-4	chr7	80192392	80192592	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013659, intron 1 of 14)	intron (NM_013659, intron 1 of 14)	5651.0	NM_013659	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	3.08289036049303	2.80928625355773	3.24991085896159	3.24307889804452	3.25123076459611	3.19061295817301	3.35793250082861	2.89104868451186	0.125854732333619	0.83272888851143	0.998431161219273
Merged-chr16-31930961-2	chr16	31930861	31931061	+	893.8000490000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4_|SINE|ID	-2890.0	NM_172822	239827.0	Mm.440388	NM_172822	ENSMUSG00000045625	Pigz	F630022B06Rik	phosphatidylinositol glycan anchor biosynthesis, class Z	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-107599635-1	chr7	107599535	107599735	+	543.0	f0_balb.idr	intron (NM_008905, intron 1 of 24)	intron (NM_008905, intron 1 of 24)	4584.0	NM_008905	19024.0	Mm.2817	NM_008905	ENSMUSG00000036528	Ppfibp2	Cclp1	PTPRF interacting protein, binding protein 2 (liprin beta 2)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-70194559-2	chr10	70194459	70194659	+	575.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10105.0	NM_001304739	69563.0	Mm.64672	NM_001304739	ENSMUSG00000019933	Mrln	2310015B20Rik|Linc-RAM|Mln	myoregulin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78807595-2	chr15	78807491	78807691	+	840.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4549.0	NM_130859	105844.0	Mm.17629	NM_130859	ENSMUSG00000033170	Card10	AI449026|Bimp1|Carma3	caspase recruitment domain family, member 10	protein-coding	-1.50516312850466	-1.47383092096757	-1.48330603914065	-1.19291545288017	-1.3546714919122	-1.47177762333306	-1.48116108007494	-1.48969600423451	-0.709809768853011	0.840354194586821	1
Merged-chr11-103413320-3	chr11	103413244	103413444	+	889.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183034)	promoter-TSS (NM_183034)	-680.0	NM_183034	353047.0	Mm.18556	NM_183034	ENSMUSG00000034247	Plekhm1	AP162|B2|BC038943|D330036J23Rik	pleckstrin homology domain containing, family M (with RUN domain) member 1	protein-coding	0.645548747570405	1.1261250307892	0.260205766614202	0.706514202839493	0.246043306685183	0.651023228847862	0.261872069032947	0.255381950343499	-2.52756367976455	0.194898724836905	1
Merged-chr16-77049488-4	chr16	77049393	77049593	+	823.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013918, intron 4 of 23)	intron (NM_013918, intron 4 of 23)	35424.0	NM_013918	30940.0	Mm.40986	NM_013918	ENSMUSG00000022867	Usp25	-	ubiquitin specific peptidase 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75540252-1	chr11	75540152	75540352	+	1000.0	f1_c57bl6.idr	intron (NM_001199284, intron 2 of 13)	intron (NM_001199284, intron 2 of 13)	8140.0	NM_001199283	215113.0	Mm.11186	NM_173388	ENSMUSG00000038178	Slc43a2	7630402D21Rik|BC042513|Lat4	solute carrier family 43, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128802911-2	chr10	128802811	128803011	+	811.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358267, intron 3 of 5)	intron (NM_001358267, intron 3 of 5)	1056.0	NM_001358267	73827.0	Mm.24630	NM_178066	ENSMUSG00000047090	Tmem198b	1110012D08Rik	transmembrane protein 198b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-97990371-2	chr3	97990271	97990471	+	870.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur2|SINE|Alu	-23167.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85383577-2	chr12	85383477	85383677	+	823.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8860.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166060192-2	chr2	166060059	166060259	+	709.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008679, intron 16 of 22)	B3|SINE|B2	67522.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152799608-2	chr1	152799508	152799708	+	970.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010877)	promoter-TSS (NM_010877)	-545.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-27210429-4	chr3	27210332	27210532	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 1 of 4)	intron (NM_178772, intron 1 of 4)	27428.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-13276540-3	chr10	13276463	13276663	+	990.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359294, intron 2 of 11)	intron (NM_001359294, intron 2 of 11)	47726.0	NM_001195096	215789.0	Mm.283359	NM_001033257	ENSMUSG00000062866	Phactr2	AV158170|BC012871	phosphatase and actin regulator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-20679768-2	chr18	20679668	20679868	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13B|LTR|ERVK	-14508.0	NR_155534	102633478.0		NR_155534	ENSMUSG00000085595	Gm16090	-	predicted gene 16090	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4510270-4	chr19	4510177	4510377	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162946)	promoter-TSS (NM_001162946)	-195.0	NM_001162946	18563.0	Mm.1845	NM_008797	ENSMUSG00000024892	Pcx	Pc|Pcb	pyruvate carboxylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-4907524-7	chr12	4907410	4907610	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145441)	promoter-TSS (NM_145441)	10.0	NM_145441	217379.0	Mm.259170	NM_145441	ENSMUSG00000020634	Ubxn2a	6330407P03Rik|Ubxd4	UBX domain protein 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-35783174-4	chr13	35783081	35783281	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001123386, intron 1 of 6)	intron (NM_001123386, intron 1 of 6)	41779.0	NM_001123386	12593.0	Mm.29002	NM_009881	ENSMUSG00000059288	Cdyl	AI325931	chromodomain protein, Y chromosome-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127196088-4	chr7	127195994	127196194	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027353)	promoter-TSS (NM_027353)	-17.0	NM_027353	70233.0	Mm.28050	NM_027353	ENSMUSG00000042502	Cd2bp2	1500011B02Rik|2410024K20Rik|AW048183	CD2 antigen (cytoplasmic tail) binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5275644-2	chr17	5275544	5275744	+	580.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 6 of 19)	intron (NM_001085355, intron 6 of 19)	143123.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166070151-1	chr2	166070051	166070251	+	694.0	f1_c57bl6.idr	3' UTR (NM_008679, exon 23 of 23)	3' UTR (NM_008679, exon 23 of 23)	77514.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	1.0235351379315	0.236016063575689	0.412955927380028	0.539278284780997	0.890785705218575	0.237578562429792	0.230602562392219	0.224628277956684	-0.890658275892456	0.647767038285333	1
Merged-chr10-71284701-2	chr10	71284601	71284801	+	904.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_145420, intron 1 of 6)	intron (NM_145420, intron 1 of 6)	561.0	NM_145420	216080.0	Mm.270530	NM_145420	ENSMUSG00000019927	Ube2d1	UBCH5	ubiquitin-conjugating enzyme E2D 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101539968-3	chr7	101539844	101540044	+	917.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	15858.0	NM_007490	11871.0	Mm.439746	NM_007490	ENSMUSG00000092517	Art2a-ps	ARTC2|Art2a|Ly92a|Rt-6|Rt6|Rt6-1	ADP-ribosyltransferase 2a, pseudogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-163599437-2	chr2	163599337	163599537	+	829.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2877.0	NM_181734	76080.0	Mm.89828	NM_029512	ENSMUSG00000017679	Ttpal	3110080A02Rik|5830472M02Rik	tocopherol (alpha) transfer protein-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-44014938-4	chr4	44014847	44015047	+	919.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080384, intron 2 of 5)	intron (NM_001080384, intron 2 of 5)	2297.0	NM_001290470	12757.0	Mm.298875	NM_016760	ENSMUSG00000028478	Clta	AV026556|Lca	clathrin, light polypeptide (Lca)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-80182636-1	chr11	80182536	80182736	+	1000.0	f1_balb.idr	Intergenic	URR1B|DNA|hAT-Charlie	-1236.0	NM_028019	71956.0	Mm.22985	NM_028019	ENSMUSG00000020707	Rnf135	0610037N03Rik|2410006N06Rik	ring finger protein 135	protein-coding	0.235202987485174	-0.0977393413539213	-0.101977419585285	-0.105231706226145	0.243200408186229	-0.0967808694237596	0.06553483426683	0.395617525450911	1.57122597922504	0.480543136436863	1
Merged-chr5-16507257-1	chr5	16507157	16507357	+	789.0	f0_balb.idr	Intergenic	Intergenic	-46238.0	NM_001289460	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-57513858-4	chr6	57513750	57513950	+	683.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175523, intron 6 of 6)	intron (NM_175523, intron 6 of 6)	21576.0	NM_175523	243382.0	Mm.396893	NM_175523	ENSMUSG00000037826	Ppm1k	2900063A19Rik|A930026L03Rik|PP2Cm	protein phosphatase 1K (PP2C domain containing)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34093463-3	chr17	34093371	34093571	+	865.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_046183, intron 2 of 4)	intron (NR_046183, intron 2 of 4)	1092.0	NM_008206	15001.0	Mm.116	NM_008206	ENSMUSG00000024334	H2-Oa	H-2Oa	histocompatibility 2, O region alpha locus	protein-coding	2.82821599741196	2.75374187699917	2.97950152401213	2.45350532479013	2.67422643279461	2.89604477084013	3.74529242891894	1.48455037107979	0.317787291602175	0.690860029107855	0.996768576110068
Merged-chr10-40212603-4	chr10	40212496	40212696	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34383.0	NM_001042556	67239.0	Mm.11480	NM_023323	ENSMUSG00000038510	Rpf2	2810470K21Rik|AU040229|AU043242|Bxdc1	ribosome production factor 2 homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-142508025-4	chr6	142507951	142508151	+	975.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302765)	promoter-TSS (NM_001302765)	-94.0	NM_001316322	16832.0	Mm.9745	NM_008492	ENSMUSG00000030246	Ldhb	AI790582|H-Ldh|LDH-B|LDH-H|Ldh-2|Ldh2	lactate dehydrogenase B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-108504947-4	chr6	108504865	108505065	+	995.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 53 of 61)	intron (NM_010585, intron 53 of 61)	15222.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-105286499-1	chr4	105286399	105286599	+	607.0	f1_c57bl6.idr	Intergenic	Intergenic	129152.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	3.92116983415621	3.19145226452557	3.29502070819512	3.60909484418719	3.05741040799423	3.8608100018141	2.84525766317296	4.17756171021039	0.0869626955127081	0.87985152461636	0.998431161219273
Merged-chr17-64745434-2	chr17	64745334	64745534	+	667.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008549, intron 20 of 21)	ORR1D1|LTR|ERVL-MaLR	-21677.0	NR_105051	101202683.0	Mm.393309	NR_105051		Dreh	-	down-regulated in hepatocellular carcinoma	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-49355647-1	chr13	49355547	49355747	+	670.0	f0_balb.idr	intron (NM_001039179, intron 1 of 6)	intron (NM_001039179, intron 1 of 6)	14098.0	NM_001039180	76895.0	Mm.197387	NM_029791	ENSMUSG00000037933	Bicd2	-	BICD cargo adaptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-86577408-4	chr11	86577304	86577504	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6754.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85543717-2	chr12	85543617	85543817	+	599.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55388.0	NM_001205052	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-86265810-3	chr12	86265713	86265913	+	901.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027405, intron 6 of 9)	RMER10B|LTR|ERVL	23955.0	NM_001324488	70373.0	Mm.252967	NM_027405	ENSMUSG00000021254	Gpatch2l	1700020O03Rik|4732487G21Rik|A630090I05Rik|Kiaa1152	G patch domain containing 2 like	protein-coding	-1.06571365394681	-1.18711713657103	-1.19800301591715	-1.20694500132994	-1.21303403269979	-0.688839904867081	-1.19553869144487	-1.20534439021633	1.59386193030005	0.629040853220405	1
Merged-chr4-88700059-2	chr4	88699959	88700159	+	619.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8791.0	NM_008336	15974.0	Mm.377093	NM_008336	ENSMUSG00000100079	Ifnab	-	interferon alpha B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-38066369-3	chr6	38066272	38066472	+	764.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080467, intron 14 of 20)	intron (NM_080467, intron 14 of 20)	-19376.0	NM_177200	320590.0	Mm.197449	NM_177200	ENSMUSG00000029830	Svopl	9430071P14Rik	SV2 related protein homolog (rat)-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-104219282-4	chr8	104219155	104219355	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001141922)	TTS (NM_001141922)	29303.0	NR_045642	57813.0	Mm.183110	NM_021028	ENSMUSG00000035824	Tk2	AU024611|mt-TK	thymidine kinase 2, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-122756069-2	chr6	122755969	122756169	+	852.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13324.0	NM_011401	20527.0	Mm.395108	NM_011401	ENSMUSG00000003153	Slc2a3	AA408729|AL023014|AL024341|AU040424|C78366|Glut-3|Glut3	solute carrier family 2 (facilitated glucose transporter), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-88832875-2	chr6	88832775	88832975	+	713.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	9060.0	NM_001362152	80283.0	Mm.166858	NM_030251	ENSMUSG00000030083	Abtb1	AI847549|BC003234|BPOZ|EF1ABP	ankyrin repeat and BTB (POZ) domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-22185158-2	chr8	22185058	22185258	+	819.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001004140, intron 1 of 8)	MTC|LTR|ERVL-MaLR	661.0	NM_001004140	80986.0	Mm.22448	NM_001004140	ENSMUSG00000037725	Ckap2	AI461656|AW228814|LB1	cytoskeleton associated protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-113631570-2	chr5	113631470	113631670	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008153, intron 1 of 2)	intron (NM_008153, intron 1 of 2)	12033.0	NM_001359060	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-87122588-1	chr11	87122488	87122688	+	544.0	f1_balb.idr	3' UTR (NM_025377, exon 4 of 4)	3' UTR (NM_025377, exon 4 of 4)	-4487.0	NM_197987	68729.0	Mm.17436	NM_197987	ENSMUSG00000018548	Trim37	1110032A10Rik|2810004E07Rik|AI848587|AU043018|MUL|TEF3|mKIAA0898	tripartite motif-containing 37	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96593551-3	chr3	96593493	96593693	+	815.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027241, intron 1 of 7)	RSINE1|SINE|B4	588.0	NM_027241	69870.0	Mm.292739	NM_027241	ENSMUSG00000028104	Polr3gl	2010003I19Rik	polymerase (RNA) III (DNA directed) polypeptide G like	protein-coding	-0.106375528460676	-0.0787673483822373	0.140315601334021	1.31524563188052	-0.104599988556462	-0.0767949453318575	-0.0856548259908806	0.300132314202877	-2.71564506361063	0.207779302631916	1
Merged-chr11-44331603-2	chr11	44331503	44331703	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68460.0	NM_001303244	16160.0	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-143061240-3	chr5	143061141	143061341	+	964.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359851, intron 12 of 15)	intron (NM_001359851, intron 12 of 15)	51779.0	NM_207110	108086.0	Mm.381440	NM_080561	ENSMUSG00000045078	Rnf216	2810055G22Rik|AI647468|AU019462|C86502|F830018F18Rik|TRIAD3|UIP83|Ubce7ip1	ring finger protein 216	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-23953745-4	chr11	23953656	23953856	+	954.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13C2|LTR|ERVK	-58486.0	NM_172555	216578.0	Mm.470599	NM_172555	ENSMUSG00000020273	Papolg	9630006B20Rik	poly(A) polymerase gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-38207971-1	chr2	38207871	38208071	+	655.0	f0_balb.idr	intron (NM_146122, intron 2 of 21)	B1F|SINE|Alu	79413.0	NM_146122	227801.0	Mm.314245	NM_146122	ENSMUSG00000035392	Dennd1a	6030446I19Rik|connecdenn	DENN/MADD domain containing 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-19365834-1	chr13	19365734	19365934	+	700.0	f1_c57bl6.idr	intron (NM_001347485, intron 7 of 7)	intron (NM_001347485, intron 7 of 7)	29979.0	NM_024270	76205.0	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	3.04759793786507	2.8122733997493	3.15815374896594	1.93909379086819	3.07218592382539	2.43878959783116	1.78873261578535	2.65414679645348	-0.466090569506071	0.556807938474859	0.960321604678676
Merged-chr5-32013223-4	chr5	32013104	32013304	+	874.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144541, intron 10 of 11)	intron (NM_144541, intron 10 of 11)	-123268.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129696775-4	chr4	129696667	129696867	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199305)	promoter-TSS (NM_199305)	78.0	NM_199305	230770.0	Mm.257157	NM_199305	ENSMUSG00000053730	Tmem39b	6330509E05Rik|BC037095	transmembrane protein 39b	protein-coding	4.65527589702881	3.77338181717409	4.32820950670789	4.2631056840274	3.53461205733426	3.01986794243882	3.05005932882645	3.47705274934967	-1.42316056948816	0.00375742566263156	0.0535835100240731
Merged-chr8-123629051-2	chr8	123628951	123629151	+	634.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	-24878.0	NM_133955	69581.0	Mm.168257	NM_133955	ENSMUSG00000039960	Rhou	2310026M05Rik|AI182090|Arhu|CDC42L1|G28K|WRCH-1|WRCH1|mG28K	ras homolog family member U	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24528075-4	chr17	24527985	24528185	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001172114)	promoter-TSS (NM_001172114)	-147.0	NM_001172114	224619.0	Mm.275150	NM_153792	ENSMUSG00000052752	Traf7	RFWD1	TNF receptor-associated factor 7	protein-coding	5.46243734318027	5.39294207489928	5.98578737550448	5.63631854840686	5.60623940746601	5.92059145111742	5.80697262586763	5.01666529857813	-0.0176336423135627	0.950663359048742	0.998431161219273
Merged-chr2-181188761-4	chr2	181188655	181188855	+	938.7666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_151465)	TTS (NR_151465)	1508.0	NM_001356427	66496.0	Mm.213943	NM_025598	ENSMUSG00000016344	Ppdpf	0610012G23Rik|2610317A05Rik|2700038C09Rik|3110053G12Rik	pancreatic progenitor cell differentiation and proliferation factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-152136738-4	chr4	152136652	152136852	+	836.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207691)	promoter-TSS (NM_207691)	-427.0	NM_207690	56226.0	Mm.264215	NM_019585	ENSMUSG00000028943	Espn	je	espin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139734975-4	chr5	139734881	139735081	+	952.212524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_174850, intron 1 of 16)	intron (NM_174850, intron 1 of 16)	1352.0	NM_174850	231830.0	Mm.240510	NM_174850	ENSMUSG00000036718	Micall2	A930021H16Rik|JRAB|MICAL-L2|mFLJ00139	MICAL-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-158142073-2	chr2	158141973	158142173	+	722.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_009373, intron 2 of 12)	intron (NM_009373, intron 2 of 12)	4319.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-97966631-2	chr15	97966531	97966731	+	766.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356508, intron 3 of 7)	intron (NM_001356508, intron 3 of 7)	2402.0	NM_001252153	380967.0	Mm.196630	NM_201359	ENSMUSG00000052369	Tmem106c	AI046681|BC046621|D15Ertd405e	transmembrane protein 106C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-62255787-2	chr10	62255687	62255887	+	552.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009314, intron 1 of 4)	intron (NM_009314, intron 1 of 4)	3349.0	NM_009314	21337.0	Mm.8054	NM_009314	ENSMUSG00000020081	Tacr2	Nk2r|Skr|Tac2r	tachykinin receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-84442781-3	chr11	84442682	84442882	+	806.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019816, intron 11 of 12)	intron (NM_019816, intron 11 of 12)	70719.0	NM_019816	56321.0	Mm.257482	NM_019816	ENSMUSG00000018697	Aatf	4933415H02Rik|5830465M17Rik|Che-1|Trb	apoptosis antagonizing transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122265194-2	chr8	122265094	122265294	+	770.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16947.0	NM_009569	22761.0	Mm.3105	NM_009569	ENSMUSG00000049577	Zfpm1	FOG|Fog1	zinc finger protein, multitype 1	protein-coding	-0.762706683409932	-0.561451685950134	-0.194611227195933	-0.75873164305774	-0.762116252703701	-0.752506980094074	-0.576720145456576	-0.758312530939924	-2.12720586019118	0.441903002681047	1
Merged-chr10-80738417-2	chr10	80738317	80738517	+	907.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_007460, intron 1 of 30)	intron (NM_007460, intron 1 of 30)	3858.0	NM_007460	11776.0	Mm.27082	NM_007460	ENSMUSG00000020198	Ap3d1	AA407035|Ap3d|Bolvr|mBLVR1|mh|mocha	adaptor-related protein complex 3, delta 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-27236353-2	chr3	27236253	27236453	+	723.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 3 of 4)	PB1D9|SINE|Alu	53349.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-41523978-4	chr10	41523868	41524068	+	959.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016898, intron 3 of 5)	intron (NM_016898, intron 3 of 5)	4468.0	NM_016898	53599.0	Mm.269815	NM_016898	ENSMUSG00000019818	Cd164	A115|A24|AA589639|AW540279|MGC-24|MSSP	CD164 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-101594490-4	chr14	101594350	101594550	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081278, intron 1 of 18)	intron (NM_001081278, intron 1 of 18)	14741.0	NM_001081278	210789.0	Mm.320639	NM_173380	ENSMUSG00000033083	Tbc1d4	5930406J04Rik|A930035N22|AV295684|As160	TBC1 domain family, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-59131388-4	chr12	59131311	59131511	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001165253)	promoter-TSS (NM_001165253)	-42.0	NM_001165253	338320.0	Mm.213215	NM_146034	ENSMUSG00000021000	Mia2	Ctage5|D12Bwg0579e|Mea6|Mgea|Mgea6	melanoma inhibitory activity 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-95797364-4	chr16	95797248	95797448	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	94941.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-112995738-4	chr5	112995636	112995836	+	854.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285806, intron 1 of 20)	intron (NM_001285806, intron 1 of 20)	19802.0	NM_001285806	320129.0	Mm.285619	NM_177078	ENSMUSG00000042249	Grk3	4833444A01Rik|AI851927|AW551196|Adrbk-2|Adrbk2|Bark-2	G protein-coupled receptor kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-120450877-2	chr1	120450777	120450977	+	548.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54147.0	NM_010766	17167.0	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-137048218-1	chr4	137048118	137048318	+	828.333313	f1_c57bl6.idr	intron (NM_198248, intron 1 of 18)	CpG	477.0	NM_198248	230848.0	Mm.31068	NM_198248	ENSMUSG00000060862	Zbtb40	BC059177|C230087D24|Gm571|mKIAA0478	zinc finger and BTB domain containing 40	protein-coding	0.872743272488125	0.916682006816729	1.54519287077064	1.49892034233342	1.53138810789815	1.48148904525251	1.28402218646395	1.71279195497546	0.981572734035941	0.447569034394876	0.914498173479176
Merged-chr7-134670759-4	chr7	134670656	134670856	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033420)	promoter-TSS (NM_001033420)	69.0	NM_001033420	330662.0	Mm.436572	NM_001033420	ENSMUSG00000058325	Dock1	9130006G06Rik|AI854900|D630004B07Rik|b2b3190Clo	dedicator of cytokinesis 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47759826-3	chr17	47759726	47759926	+	916.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161723, intron 1 of 8)	intron (NM_001161723, intron 1 of 8)	21895.0	NM_001161723	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115651666-2	chr5	115651566	115651766	+	659.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_151599, intron 9 of 10)	intron (NR_151599, intron 9 of 10)	1920.0	NR_151601	75665.0	Mm.233914	NM_001080808	ENSMUSG00000041609	Bicdl1	2210403N09Rik|BICDR-1|Ccdc64	BICD family like cargo adaptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-109116683-4	chr4	109116595	109116795	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355190, intron 2 of 21)	intron (NM_001355190, intron 2 of 21)	1341.0	NM_173350	100273.0	Mm.366315	NM_133885	ENSMUSG00000028559	Osbpl9	2600011I06Rik|AU015843|Orp-9	oxysterol binding protein-like 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-120823428-3	chr7	120823324	120823524	+	745.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19407.0	NM_007908	13631.0	Mm.25997	NM_007908	ENSMUSG00000035064	Eef2k	C86191|eEF-2K	eukaryotic elongation factor-2 kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150341012-3	chr4	150340914	150341114	+	856.727783	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 1 of 22)	intron (NM_001085492, intron 1 of 22)	59098.0	NM_001085492	68703.0	Mm.291274	NM_001085492	ENSMUSG00000039852	Rere	1110033A15Rik|AI414665|ARG|ARP|ATN1L|AW742570|Atr2|DNB1|eye<m03Jus>|eyes3|mKIAA0458	arginine glutamic acid dipeptide (RE) repeats	protein-coding	2.61670137546301	2.95879311849408	3.60106267494764	3.43176292381952	3.21109911334682	3.42362251856719	2.21404075948269	4.18883378839859	0.378782114463312	0.568243618454871	0.962718661854691
Merged-chr13-119602075-3	chr13	119601943	119602143	+	897.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177666, intron 2 of 3)	intron (NM_001177666, intron 2 of 3)	-21776.0	NM_020279	56838.0	Mm.143745	NM_020279	ENSMUSG00000074715	Ccl28	CCK1|MEC|Scya28	chemokine (C-C motif) ligand 28	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-34008687-7	chr11	34008630	34008830	+	947.944458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155520, intron 4 of 4)	intron (NR_155520, intron 4 of 4)	-15537.0	NM_001190886	70357.0	Mm.252514	NM_027398	ENSMUSG00000053519	Kcnip1	KCHIP1|Kchip1.2	Kv channel-interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-58859141-4	chr7	58859028	58859228	+	900.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	200926.0	NM_009728	11982.0	Mm.135129	NM_009728	ENSMUSG00000025324	Atp10a	Atp10c|pfatp	ATPase, class V, type 10A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99161560-2	chr7	99161460	99161660	+	622.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026384, intron 4 of 7)	intron (NM_026384, intron 4 of 7)	-20416.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	-0.404403934487667	-0.392141017681403	0.166193497611112	-0.399265645156759	-0.259057723485546	0.104934206482157	-0.395278260327185	-0.398724298848982	0.0801711153882271	0.974757082004961	1
Merged-chr2-113449459-4	chr2	113449356	113449556	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285459, intron 2 of 16)	intron (NM_001285459, intron 2 of 16)	8392.0	NM_001285459	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-113848355-4	chr2	113848252	113848452	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_181416, exon 1 of 12)	5' UTR (NM_181416, exon 1 of 12)	309.0	NM_181416	228482.0	Mm.45753	NM_181416	ENSMUSG00000041219	Arhgap11a	6530401L14Rik|mKIAA0013	Rho GTPase activating protein 11A	protein-coding	6.50012581347521	5.98011351889464	5.81408005559924	6.20091645033778	6.2664201908055	5.86571515103349	5.64811145008252	5.99814782797533	-0.204112636899029	0.408870122573945	0.892689020497791
Merged-chr10-100742230-4	chr10	100742121	100742321	+	982.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_152765)	promoter-TSS (NR_152765)	-586.0	NR_152765	102639396.0	Mm.404529	NR_152765		Gm35722	-	predicted gene, 35722	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-72851950-4	chr5	72851862	72852062	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013689, intron 1 of 17)	L2|LINE|L2	16486.0	NM_001113461	21682.0	Mm.319581	NM_013689	ENSMUSG00000029217	Tec	-	tec protein tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-114530779-3	chr7	114530679	114530879	+	821.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011055, exon 13 of 16)	exon (NM_011055, exon 13 of 16)	32193.0	NR_110407	244209.0	Mm.108037	NM_177382	ENSMUSG00000030670	Cyp2r1	-	cytochrome P450, family 2, subfamily r, polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-98531038-1	chr7	98530938	98531138	+	987.0	f1_balb.idr	Intergenic	Lx5c|LINE|L1	36816.0	NM_001113379	434215.0	Mm.323057	NM_001113379	ENSMUSG00000090958	Lrrc32	AI426318|D11S833Eh|D7H11S833E|EG434215|Garp	leucine rich repeat containing 32	protein-coding	-1.50811478453619	-0.99851579554048	-1.48484165847197	-1.49312904261012	-1.50577282675516	-1.47256636097272	-1.48255773576353	-1.49164560481169	-2.24133836997777	0.518237887813808	1
Merged-chr7-35185612-2	chr7	35185512	35185712	+	724.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017394)	promoter-TSS (NM_017394)	-773.0	NM_017394	53896.0	Mm.35567	NM_017394	ENSMUSG00000030495	Slc7a10	AL024237|Asc-1|D7Bwg0847e	solute carrier family 7 (cationic amino acid transporter, y+ system), member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-27859629-2	chr7	27859529	27859729	+	912.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024726)	promoter-TSS (NM_001024726)	-956.0	NM_001024726	545938.0	Mm.458180	NM_001024726	ENSMUSG00000020420	Zfp607a	4732475C15Rik|Zfp607	zinc finger protein 607A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117791680-1	chr10	117791580	117791780	+	540.0	f1_c57bl6.idr	intron (NM_134010, intron 1 of 27)	intron (NM_134010, intron 1 of 27)	1025.0	NM_134010	103468.0	Mm.12568	NM_134010	ENSMUSG00000052798	Nup107	AW541137|C76801	nucleoporin 107	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-52938477-4	chr2	52938362	52938562	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	80594.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-14080282-2	chr14	14080182	14080382	+	785.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_139227, intron 4 of 11)	intron (NM_139227, intron 4 of 11)	40622.0	NM_025550	66413.0	Mm.27591	NM_025550	ENSMUSG00000021737	Psmd6	2400006A19Rik	proteasome (prosome, macropain) 26S subunit, non-ATPase, 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-98234316-2	chr6	98234216	98234416	+	888.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	108438.0	NM_001128092	330390.0	Mm.484161	NM_001128092	ENSMUSG00000090667	Gm765	-	predicted gene 765	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-77222128-2	chr1	77222028	77222228	+	723.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	274640.0	NR_105770	102465180.0		NR_105770	ENSMUSG00000099141	Mir6352	Gm27481|mmu-mir-6352	microRNA 6352	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-52801854-4	chr1	52801700	52801900	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008384, intron 1 of 5)	intron (NM_008384, intron 1 of 5)	15888.0	NM_008384	16329.0	Mm.917	NM_008384	ENSMUSG00000026102	Inpp1	2300002C06Rik|AV137389	inositol polyphosphate-1-phosphatase	protein-coding	4.20944365481142	4.15485776765156	4.95263221799798	2.796482559955	4.01758920420677	3.02818951056288	3.51114996647151	3.86691274522646	-0.773831632221456	0.164682406897493	0.62858733339007
Merged-chr1-91346991-3	chr1	91346944	91347144	+	691.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001033292, exon 9 of 9)	3' UTR (NM_001033292, exon 9 of 9)	-4029.0	NM_027551	70788.0	Mm.68617	NM_027551	ENSMUSG00000026308	Klhl30	4631423F02Rik	kelch-like 30	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-59823252-2	chr4	59823181	59823381	+	811.0	f0_balb.idr|f0_c57.idr	intron (NM_172468, intron 1 of 8)	L1MB2|LINE|L1	17631.0	NM_172468	209131.0	Mm.259705	NM_172468	ENSMUSG00000028385	Snx30	4732481H14Rik|C030041J06Rik	sorting nexin family member 30	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80029938-6	chr7	80029828	80030028	+	851.2666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175433, intron 1 of 4)	intron (NM_175433, intron 1 of 4)	3700.0	NM_175433	209225.0	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	0.114202000060139	1.71614442929503	0.382970423926324	0.130472023337267	0.32377999960513	0.154679991916092	0.142664760890093	0.710916015390067	-1.99345238814852	0.279469197128076	0.782818232017742
Merged-chr15-66093673-4	chr15	66093578	66093778	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152923, intron 1 of 14)	C-rich|Low_complexity|Low_complexity	-116874.0	NM_001145096	654498.0	Mm.364550	NM_001145096	ENSMUSG00000072511	Hhla1	F930104E18Rik	HERV-H LTR-associating 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-106230794-2	chr1	106230694	106230894	+	788.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133821, intron 1 of 16)	RMER19A|LTR|ERVK	58925.0	NM_133821	98432.0	Mm.24115	NM_133821	ENSMUSG00000044340	Phlpp1	AI836256|Phlpp|Plekhe1|SCOP|mKIAA0606	PH domain and leucine rich repeat protein phosphatase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-39962597-4	chr15	39962520	39962720	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045719)	promoter-TSS (NR_045719)	-29.0	NR_045719	105976.0	Mm.394885	NR_045719		AU022793	-	expressed sequence AU022793	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-54447270-2	chr13	54447170	54447370	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21570.0	NM_028597	73666.0	Mm.292487	NM_028597	ENSMUSG00000025872	Thoc3	2410044K02Rik|AL033344	THO complex 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-152932255-4	chr3	152932145	152932345	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012028, intron 2 of 4)	intron (NM_012028, intron 2 of 4)	49962.0	NM_012028	26938.0	Mm.40915	NM_012028	ENSMUSG00000039037	St6galnac5	AI851940|Siat7e	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-32249932-4	chr19	32249764	32249964	+	970.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 3 of 9)	intron (NM_144792, intron 3 of 9)	-38851.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-102111577-2	chr15	102111477	102111677	+	568.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_153533, exon 18 of 29)	exon (NM_153533, exon 18 of 29)	8643.0	NM_153533	209039.0	Mm.29389	NM_153533	ENSMUSG00000037003	Tns2	C1-ten|Tenc1|nep|nph	tensin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-104414990-3	chr9	104414912	104415112	+	660.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11101.0	NR_035516	100316725.0		NR_035516	ENSMUSG00000089406	Mir2136	mmu-mir-2136	microRNA 2136	ncRNA	3.58366996149011	3.64817066974481	2.28538843235453	2.65518753018013	3.56382278114626	2.38849488428078	2.10719907869445	2.99121435374058	-0.461001598107297	0.533462805807508	0.952228804765824
Merged-chr9-35029242-2	chr9	35029142	35029342	+	721.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001190912, intron 13 of 15)	intron (NM_001190912, intron 13 of 15)	-87486.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-116683602-1	chr14	116683502	116683702	+	917.0	f1_balb.idr	Intergenic	Intergenic	-241695.0	NM_001079844	23888.0	Mm.440025	NM_011821	ENSMUSG00000058571	Gpc6	-	glypican 6	protein-coding	-1.10262295305493	-1.0808548865726	-1.09209159927202	-0.933629306001664	-1.10213768760223	-1.07841984405556	-1.0895478538186	-0.557227009491809	1.70342206228902	0.599203224400871	1
Merged-chr15-77306875-5	chr15	77306750	77306950	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001110827, exon 1 of 14)	5' UTR (NM_001110827, exon 1 of 14)	203.0	NM_001110827	93686.0	Mm.202774	NM_053104	ENSMUSG00000033565	Rbfox2	Fbm2|Fxh|Hrnbp2|Rbm9	RNA binding protein, fox-1 homolog (C. elegans) 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5605582-4	chr17	5605494	5605694	+	989.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	112994.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-33725750-2	chr11	33725650	33725850	+	607.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001190885, intron 1 of 8)	intron (NM_001190885, intron 1 of 8)	117835.0	NM_027398	70357.0	Mm.252514	NM_027398	ENSMUSG00000053519	Kcnip1	KCHIP1|Kchip1.2	Kv channel-interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-19357216-2	chr10	19357116	19357316	+	650.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_053008, exon 1 of 1)	exon (NM_053008, exon 1 of 1)	677.0	NM_053008	94222.0	Mm.156946	NM_053008	ENSMUSG00000045591	Olig3	Bhlhb7|bHLHe20|oligo3	oligodendrocyte transcription factor 3	protein-coding	-2.05752322593321	-2.15521190974092	-2.16307242109104	-2.16952927915413	-2.17938029103484	-2.15350850414045	-2.16129297361887	-2.16837350464794	-0.683654500252594	0.846597994014493	1
Merged-chr3-103587522-4	chr3	103587419	103587619	+	877.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001276681, exon 3 of 8)	exon (NM_001276681, exon 3 of 8)	11393.0	NM_001276681	54524.0	Mm.88818	NM_018800	ENSMUSG00000027849	Syt6	3110037A08Rik|AW048930|sytVI	synaptotagmin VI	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-8559116-1	chr11	8559016	8559216	+	543.0	f1_c57bl6.idr	intron (NM_001083587, intron 4 of 30)	intron (NM_001083587, intron 4 of 30)	105419.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	-1.14149542847138	-0.33100028091332	-1.12720875772362	-1.13728867753953	-1.14086750656251	-1.11193125150289	-1.12436624874263	-1.1356767669541	-2.98824766641611	0.369648585513947	1
Merged-chr1-167212503-3	chr1	167212399	167212599	+	867.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	72628.0	NM_030724	80914.0	Mm.280895	NM_030724	ENSMUSG00000026558	Uck2	AA407809|AI481316|AU018180|AU020720|TSA903|UK|UMK|Umpk	uridine-cytidine kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-103995292-2	chr5	103995192	103995392	+	559.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_053262, intron 5 of 6)	MLTR18D_MM|LTR|ERVK	-17904.0	NM_001163486	243168.0	Mm.284944	NM_198030	ENSMUSG00000034528	Hsd17b13	AI047820|PAN1B-like|Pan1b	hydroxysteroid (17-beta) dehydrogenase 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78355712-4	chr15	78355608	78355808	+	822.325012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7109.0	NR_106137	102465776.0		NR_106137	ENSMUSG00000098996	Mir7676-1	Gm27600|mmu-mir-7676-1	microRNA 7676-1	ncRNA	-0.695201985804855	-0.686215238149216	-0.689175795674284	-0.404419854949823	-0.240371705854086	-0.498627206693393	-0.688524178122579	-0.691052668746819	1.17553800475546	0.672917198464564	1
Merged-chr5-33018748-4	chr5	33018653	33018853	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011738)	promoter-TSS (NM_011738)	-63.0	NM_011738	22629.0	Mm.332314	NM_011738	ENSMUSG00000018965	Ywhah	-	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-37386398-4	chr10	37386294	37386494	+	875.341675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-247468.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-73616280-2	chr7	73616180	73616380	+	692.375	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F1|SINE|Alu	-57885.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-78468433-2	chr11	78468333	78468533	+	772.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026740, intron 2 of 4)	intron (NM_026740, intron 2 of 4)	2732.0	NM_026740	52466.0	Mm.131618	NM_026740	ENSMUSG00000020829	Slc46a1	1110002C08Rik|D11Ertd18e|HCP1|Pcft	solute carrier family 46, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-65108781-3	chr15	65108674	65108874	+	884.8833619999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-186478.0	NM_009623	11514.0	Mm.1425	NM_009623	ENSMUSG00000022376	Adcy8	AC8|AW060868	adenylate cyclase 8	protein-coding	1.98254806569776	2.0203957288973	1.35582660841376	1.64966166036216	2.08133425402192	2.03579075405903	1.13816974368239	1.65769533803318	0.0182770365778732	0.986586485236132	0.998431161219273
Merged-chr8-68203572-4	chr8	68203464	68203664	+	665.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72964.0	NM_028182	72281.0	Mm.40974	NM_028182	ENSMUSG00000053886	Sh2d4a	2210402M20Rik|SH2A	SH2 domain containing 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-83662522-4	chr8	83662433	83662633	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018771, intron 4 of 6)	intron (NM_018771, intron 4 of 6)	-4111.0	NM_013641	19216.0	Mm.213000	NM_013641	ENSMUSG00000019464	Ptger1	EP1|Ptgerep1	prostaglandin E receptor 1 (subtype EP1)	protein-coding	4.09962943839011	2.88735667552218	4.10232463565959	3.99338949603906	4.17497276562928	4.07129538132023	3.87126251605752	4.01285339147299	0.239721014982986	0.616262939455633	0.977352076822579
Merged-chr7-126824865-2	chr7	126824767	126824967	+	752.25	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001146347, exon 1 of 4)	5' UTR (NM_001146347, exon 1 of 4)	214.0	NM_001146347	68952.0	Mm.440393	NM_026884	ENSMUSG00000058966	Fam57b	1500016O10Rik|A330104J06Rik|AI413816|AW060769	family with sequence similarity 57, member B	protein-coding	-1.50811478453619	-0.99851579554048	-1.48484165847197	-1.49312904261012	-1.50577282675516	-1.47256636097272	-1.48255773576353	-1.49164560481169	-2.24133836997777	0.518237887813808	1
Merged-chr19-53305777-2	chr19	53305677	53305877	+	597.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4729.0	NM_001008542	17859.0	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100938331-4	chr11	100938236	100938436	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_213660, intron 1 of 23)	intron (NM_213660, intron 1 of 23)	1204.0	NM_213660	20848.0	Mm.249934	NM_011486	ENSMUSG00000004040	Stat3	1110034C02Rik|AW109958|Aprf	signal transducer and activator of transcription 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28260095-4	chr17	28259989	28260189	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011145, intron 2 of 7)	intron (NM_011145, intron 2 of 7)	-11619.0	NR_045427	69050.0	Mm.486938	NR_045427	ENSMUSG00000002250	1810013A23Rik	-	RIKEN cDNA 1810013A23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-36748675-4	chr5	36748571	36748771	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133724)	promoter-TSS (NM_133724)	8.0	NM_133724	117197.0	Mm.46744	NM_133724	ENSMUSG00000060708	Bloc1s4	2610101N07Rik|Blos4|Cno	biogenesis of lysosomal organelles complex-1, subunit 4, cappuccino	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-167394287-5	chr1	167394174	167394374	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025569)	promoter-TSS (NM_025569)	-477.0	NM_025569	66447.0	Mm.218286	NM_025569	ENSMUSG00000026688	Mgst3	2010012L10Rik|2010306B17Rik|2700004G04Rik|AA516734|GST-III	microsomal glutathione S-transferase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-54222573-3	chr14	54222468	54222668	+	777.6777950000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31361.0	NM_001113358	13135.0	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	1.87999355018489	1.70354091562971	0.92168195434876	2.2212984896619	1.62410838652274	0.944997825615612	0.925939744135215	1.46374229404023	-1.57473075055769	0.228472093646044	0.721861600842291
Merged-chr15-51952590-4	chr15	51952480	51952680	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	39180.0	NM_009009	19357.0	Mm.182628	NM_009009	ENSMUSG00000022314	Rad21	SCC1|mKIAA0078	RAD21 cohesin complex component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-139208199-4	chr7	139208108	139208308	+	961.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162540, intron 1 of 11)	intron (NM_001162540, intron 1 of 11)	-4780.0	NM_027164	76612.0	Mm.17757	NM_027164	ENSMUSG00000015980	Lrrc27	1700071K18Rik|2310044E02Rik	leucine rich repeat containing 27	protein-coding	4.67823958341623	4.23239521333945	4.79425083109223	5.18310975089729	4.67785119205375	4.40074879356456	4.90946143938974	4.69396670723698	-0.104991468361789	0.772391703983159	0.998431161219273
Merged-chr9-99179387-2	chr9	99179287	99179487	+	816.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A2|LTR|ERVL-MaLR	-39176.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34632545-4	chr17	34632454	34632654	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_030890)	TTS (NM_030890)	2868.0	NM_030890	260297.0	Mm.390965	NM_030890	ENSMUSG00000015476	Prrt1	Bat-4|Bat4|D17H6S54E|DSPD1|G5b|NG5|ORF31|SynDIG4	proline-rich transmembrane protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-31494706-4	chr5	31494653	31494853	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133756)	promoter-TSS (NM_133756)	12.0	NM_133756	74254.0	Mm.348649	NM_133756	ENSMUSG00000064037	Gpn1	2410004J02Rik|AI449615|MBDIN|NTPBP|Xab1	GPN-loop GTPase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-55487415-2	chr13	55487315	55487515	+	997.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177371, intron 1 of 14)	CpG	661.0	NM_001177371	56320.0	Mm.19016	NM_019813	ENSMUSG00000034675	Dbn1	-	drebrin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-57330093-2	chr17	57329993	57330193	+	727.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_011691)	TTS (NM_011691)	-28593.0	NM_001355723	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-151073594-4	chr4	151073545	151073745	+	876.8916630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081557, intron 22 of 23)	intron (NM_001081557, intron 22 of 23)	-15692.0	NM_009498	22319.0	Mm.273930	NM_009498	ENSMUSG00000028955	Vamp3	D130027G05Rik|VAMP-3|ceb	vesicle-associated membrane protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-49954022-3	chr16	49953931	49954131	+	946.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1799.0	NR_153658	100503490.0	Mm.72499	NR_153658		Gm19723	-	predicted gene, 19723	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-4389747-2	chr10	4389647	4389847	+	844.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1639.0	NM_001033466	381990.0	Mm.262466	NM_001033466	ENSMUSG00000075327	Zbtb2	Gm1103	zinc finger and BTB domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-7849755-1	chr10	7849655	7849855	+	685.0	f1_c57bl6.idr	intron (NM_172785, intron 2 of 5)	intron (NM_172785, intron 2 of 5)	13374.0	NR_039563	100628581.0		NR_039563	ENSMUSG00000093060	Mir5104	mir-5104|mmu-mir-5104|mu-mir-5104	microRNA 5104	ncRNA	1.81265118357965	1.23097576636119	2.66021553859228	2.65185980283635	1.9471478379172	1.71698985280453	2.11712878222911	1.41902306594681	-1.02031862552195	0.320358350209796	0.822777175850409
Merged-chr3-155957648-1	chr3	155957548	155957748	+	659.0	f1_c57bl6.idr	Intergenic	RLTR10C|LTR|ERVK	-18706.0	NR_040553	329780.0	Mm.119000	NR_040553	ENSMUSG00000104553	9330178D15Rik	9330178D15	RIKEN cDNA 9330178D15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-53566939-4	chr6	53566801	53567001	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001327821, intron 5 of 10)	intron (NM_001327821, intron 5 of 10)	-6473.0	NM_172728	231991.0	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6267112-2	chr19	6267012	6267212	+	624.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	2268.0	NR_029720	387187.0		NR_029720	ENSMUSG00000065523	Mir192	Mirn192|mir-192|mmu-mir-192	microRNA 192	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-88514487-5	chr15	88514417	88514617	+	822.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-85785.0	NM_027306	70073.0	Mm.45306	NM_027306	ENSMUSG00000054117	Zdhhc25	1700030J15Rik	zinc finger, DHHC domain containing 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-59907942-3	chr1	59907848	59908048	+	741.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5058.0	NM_001037725	72750.0	Mm.258250	NM_001037725	ENSMUSG00000041040	Fam117b	2810425F24Rik|6330416D14Rik|Als2cr13	family with sequence similarity 117, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-79529859-4	chr11	79529747	79529947	+	841.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033711, intron 1 of 1)	intron (NM_001033711, intron 1 of 1)	762.0	NM_146023	101488212.0	Mm.439665	NM_146023	ENSMUSG00000070354	Evi2	Evi2a-evi2b|Gm21975	ecotropic viral integration site 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-76194383-4	chr14	76194279	76194479	+	980.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57083.0	NR_152108	72893.0	Mm.233565	NR_152108		2900040C04Rik	-	RIKEN cDNA 2900040C04 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97210695-4	chr6	97210586	97210786	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022992)	promoter-TSS (NM_022992)	-106.0	NM_022992	65106.0	Mm.291014	NM_022992	ENSMUSG00000035199	Arl6ip5	5930404D22Rik|AV001879|Aip-5|Gtrap3-18|addiscin	ADP-ribosylation factor-like 6 interacting protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-80482404-2	chr17	80482304	80482504	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1951.0	NM_009231	20662.0	Mm.60975	NM_009231	ENSMUSG00000024241	Sos1	4430401P03Rik|9630010N06|AI449023	SOS Ras/Rac guanine nucleotide exchange factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128243878-3	chr2	128243784	128243984	+	845.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	116309.0	NM_001284410	12125.0	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	1.14385407322193	1.31290541472606	1.39419406864352	0.687305334353491	1.15499479493752	1.98790610869758	0.702380865243467	0.689375113878948	0.393795533364532	0.788121085034144	0.998431161219273
Merged-chr2-19631438-3	chr2	19631313	19631513	+	826.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	26484.0	NR_033642	100041244.0	Mm.407223	NR_033642		Gm3230	-	predicted gene 3230	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-95590283-4	chr1	95590178	95590378	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009183, exon 5 of 5)	3' UTR (NM_009183, exon 5 of 5)	77316.0	NM_009183	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-46994973-4	chr14	46994872	46995072	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037221, intron 2 of 12)	intron (NM_001037221, intron 2 of 12)	-6368.0	NM_001163433	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-61410357-2	chr11	61410257	61410457	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-32282.0	NM_026183	67473.0	Mm.100741	NM_026183	ENSMUSG00000010122	Slc47a1	1300013J15Rik|AI036982|MATE1|mMATE1	solute carrier family 47, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91792826-2	chr16	91792726	91792926	+	877.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110276, intron 4 of 15)	intron (NM_001110276, intron 4 of 15)	63455.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-80962987-4	chr13	80962902	80963102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1072.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-8224439-3	chr15	8224340	8224540	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162906, intron 31 of 52)	MTD|LTR|ERVL-MaLR	55334.0	NM_001162906	73692.0	Mm.164436	NM_001162906	ENSMUSG00000039801	2410089E03Rik	4732468D17Rik|Hug|Jbts17|b2b012Clo	RIKEN cDNA 2410089E03 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128186107-4	chr10	128186019	128186219	+	825.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-5822.0	NM_001039080	56516.0	Mm.42247	NM_019711	ENSMUSG00000040043	Rbms2	2610315E04Rik|Scr3	RNA binding motif, single stranded interacting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-86991449-2	chr11	86991349	86991549	+	759.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001005341, intron 1 of 4)	MER112|DNA|hAT-Charlie	2313.0	NM_001005341	77864.0	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-112816429-2	chr12	112816329	112816529	+	866.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_145450)	TTS (NM_145450)	7454.0	NM_145450	217887.0	Mm.186678	NM_145450	ENSMUSG00000037594	BC022687	AW050009|C130001I08Rik|Clba1|Flj20080	cDNA sequence BC022687	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52254402-2	chr13	52254302	52254502	+	725.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	157661.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-103874517-3	chr3	103874413	103874613	+	828.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104070, intron 6 of 22)	intron (NR_104070, intron 6 of 22)	14236.0	NM_008979	19260.0	Mm.395	NM_008979	ENSMUSG00000027843	Ptpn22	70zpep|PEP|Ptpn8	protein tyrosine phosphatase, non-receptor type 22 (lymphoid)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-29548859-2	chr11	29548759	29548959	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024277)	promoter-TSS (NM_024277)	-819.0	NM_001033865	78294.0	Mm.180003	NM_024277	ENSMUSG00000020460	Rps27a	0610006J14Rik|Uba52|Ubb|Ubc	ribosomal protein S27A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-36696732-4	chr5	36696629	36696829	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081232)	promoter-TSS (NM_001081232)	-708.0	NM_001081232	320661.0	Mm.26480	NM_177221	ENSMUSG00000029190	D5Ertd579e	9030221A05Rik|A930018H20Rik|Kiaa0232	DNA segment, Chr 5, ERATO Doi 579, expressed	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-59438751-4	chr14	59438654	59438854	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001320720, intron 1 of 13)	intron (NM_001320720, intron 1 of 13)	2126.0	NM_001320725	107303348.0		NM_001320725		Gm45935	Setdb2-phf11c	predicted gene, 45935	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125170388-2	chr6	125170288	125170488	+	747.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146171, intron 27 of 31)	intron (NM_146171, intron 27 of 31)	-3921.0	NM_001289726	14433.0	Mm.304088	NM_008084	ENSMUSG00000057666	Gapdh	Gapd	glyceraldehyde-3-phosphate dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-20370303-2	chr14	20370203	20370403	+	790.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001024512, intron 7 of 13)	B1_Mus1|SINE|Alu	18607.0	NM_134081	108671.0	Mm.2871	NM_134081	ENSMUSG00000021811	Dnajc9	5330419I01Rik|AU020082	DnaJ heat shock protein family (Hsp40) member C9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-56114077-4	chr9	56113991	56114191	+	984.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011193, intron 1 of 14)	intron (NM_011193, intron 1 of 14)	24115.0	NM_011193	19200.0	Mm.2534	NM_011193	ENSMUSG00000032322	Pstpip1	CD2BP1|def-2	proline-serine-threonine phosphatase-interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-82101672-4	chr11	82101574	82101774	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011331)	promoter-TSS (NM_011331)	-171.0	NM_011331	20293.0	Mm.867	NM_011331	ENSMUSG00000035352	Ccl12	MCP-5|Scya12	chemokine (C-C motif) ligand 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-133032714-4	chr7	133032612	133032812	+	860.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009980, intron 2 of 10)	intron (NM_009980, intron 2 of 10)	-17465.0	NM_001170744	13017.0	Mm.246240	NM_009980	ENSMUSG00000030970	Ctbp2	AA407280|D7Ertd45e|Gtrgeo6|Ribeye	C-terminal binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-110817655-2	chr12	110817555	110817755	+	588.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011973, intron 4 of 11)	B2_Mm2|SINE|B2	23284.0	NM_011973	26448.0	Mm.140948	NM_011973	ENSMUSG00000056458	Mok	RAGE1|Rage|Stk30	MOK protein kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-61621470-3	chr8	61621386	61621586	+	991.761902	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293772, intron 10 of 21)	intron (NM_001293772, intron 10 of 21)	-30317.0	NM_001293774	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	-1.19335182432915	-0.679236846441172	-1.17869253011172	-1.18770104708644	-1.19287245488464	-1.16534908855667	-1.17620987018611	-1.01787770319745	-1.51641087812255	0.644585559088532	1
Merged-chr1-182517546-4	chr1	182517440	182517640	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009794)	promoter-TSS (NM_009794)	70.0	NM_009794	12334.0	Mm.19306	NM_009794	ENSMUSG00000026509	Capn2	AI326419|CALP80|Capa-2|Capa2|m-calpain|m-calpin	calpain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-101596344-4	chr3	101596258	101596458	+	996.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144900, intron 1 of 22)	intron (NM_144900, intron 1 of 22)	8349.0	NM_144900	11928.0	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding	4.94626677329217	4.06970886661563	5.06118293557062	4.66282897536191	3.72096583268199	3.42054719928843	4.35106117787991	3.9812798157854	-1.07411291287113	0.0122300517865202	0.1256302751153
Merged-chr15-25553231-4	chr15	25553114	25553314	+	938.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69336.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-59469923-2	chr4	59469823	59470023	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-31290.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-13760283-4	chr17	13760203	13760403	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010806)	promoter-TSS (NM_010806)	-238.0	NR_151731	17356.0	Mm.59167	NM_010806	ENSMUSG00000068036	Afdn	5033403D15Rik|AF6|Af-6|Afadin|Gm314|I-afadin|Mllt4|S-afadin	afadin, adherens junction formation factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-23853079-2	chr11	23852979	23853179	+	684.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F2|LTR|ERVL-MaLR	42191.0	NM_172555	216578.0	Mm.470599	NM_172555	ENSMUSG00000020273	Papolg	9630006B20Rik	poly(A) polymerase gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-85131854-2	chr6	85131754	85131954	+	952.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5760.0	NM_001034902	545861.0	Mm.321419	NM_001034902	ENSMUSG00000072952	Gm5878	EG545861	predicted gene 5878	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-87653619-4	chr4	87653495	87653695	+	953.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	G-rich|Low_complexity|Low_complexity	152728.0	NM_001286158	70122.0	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-120353085-4	chr2	120352978	120353178	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027618)	promoter-TSS (NR_027618)	55.0	NR_027618	269338.0	Mm.246131	NM_147153	ENSMUSG00000027291	Vps39	A230065P22Rik|AW743070|Vam6|Vam6P|mVam6	VPS39 HOPS complex subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-34208445-2	chr8	34208345	34208545	+	604.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41733.0	NR_105820	102465211.0		NR_105820	ENSMUSG00000098785	Mir6395	Gm27561|mmu-mir-6395	microRNA 6395	ncRNA	-0.539072095141396	-1.17607782048307	-1.18720726126045	-1.19634931528472	-1.20196491063698	-1.17366602423904	-1.18468779981884	-1.19471289198531	-2.68787187143179	0.435473844436726	1
Merged-chr13-99175319-3	chr13	99175209	99175409	+	821.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9514.0	NM_001004149	238803.0	Mm.343207	NM_001004149	ENSMUSG00000050919	Zfp366	DC-SCRIPT|Znf366	zinc finger protein 366	protein-coding	2.46828881988569	2.78033924587976	1.89644312499238	1.47127003108011	1.4147500190285	1.79089645356152	2.78365932156218	2.00037660198431	-0.334344111184458	0.732134962313178	0.998431161219273
Merged-chr19-60757950-4	chr19	60757856	60758056	+	763.474976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_178421, exon 1 of 1)	3' UTR (NM_178421, exon 1 of 1)	1969.0	NM_178421	332397.0	Mm.186390	NM_178421	ENSMUSG00000072437	Nanos1	NOS-1	nanos C2HC-type zinc finger 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-24513423-2	chr9	24513323	24513523	+	743.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10283.0	NM_172920	244745.0	Mm.38526	NM_172920	ENSMUSG00000043067	Dpy19l1	1100001I19Rik|6030402K12|AI225861|AW558481	dpy-19-like 1 (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-165679829-3	chr1	165679681	165679881	+	786.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038846, intron 1 of 5)	intron (NM_001038846, intron 1 of 5)	28313.0	NM_001038846	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-48814002-6	chr2	48813890	48814090	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007396)	promoter-TSS (NM_007396)	-119.0	NM_007396	11480.0	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35331568-3	chr17	35331487	35331687	+	895.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MYSERV6-int|LTR|ERVK	-10746.0	NM_010392	15013.0	Mm.427969	NM_010392	ENSMUSG00000091705	H2-Q2	BE136769|Gm11132|H-2Q2|gs14-2	histocompatibility 2, Q region locus 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-23683524-2	chr13	23683424	23683624	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290380)	promoter-TSS (NM_001290380)	435.0	NM_178189	319164.0	Mm.261973	NM_178189	ENSMUSG00000069270	Hist1h2ac	-	histone cluster 1, H2ac	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-85005776-4	chr4	85005683	85005883	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175275, intron 11 of 25)	intron (NM_175275, intron 11 of 25)	121474.0	NM_177385	338349.0	Mm.440562	NM_175275	ENSMUSG00000038070	Cntln	AI448092|B430108F07Rik|D530005L17Rik	centlein, centrosomal protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-168431565-4	chr1	168431518	168431718	+	764.720825	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001291509, exon 1 of 7)	5' UTR (NM_001291509, exon 1 of 7)	551.0	NM_001291509	18514.0	Mm.43358	NM_008783	ENSMUSG00000052534	Pbx1	2310056B04Rik|D230003C07Rik|Pbx-1	pre B cell leukemia homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-113841204-2	chr5	113841104	113841304	+	828.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10703.0	NM_009151	20345.0	Mm.332590	NM_009151	ENSMUSG00000048163	Selplg	CD162|Psgl-1|Psgl1|Selp1|Selpl	selectin, platelet (p-selectin) ligand	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-179955797-2	chr2	179955697	179955897	+	996.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081092, intron 1 of 14)	MTD|LTR|ERVL-MaLR	20849.0	NM_001081092	228980.0	Mm.235542	NM_001081092	ENSMUSG00000039117	Taf4	135kDa|AI450312|TAFII130|TAFII135|Taf2c1|Taf4a	TATA-box binding protein associated factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-34841925-4	chr19	34841803	34842003	+	977.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114339, intron 1 of 6)	ID_B1|SINE|B4	-21130.0	NR_029783	723826.0		NR_029783	ENSMUSG00000065594	Mir107	Mirn107|mir-107|mmu-mir-107	microRNA 107	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-8781146-1	chr10	8781046	8781246	+	695.0	f1_balb.idr	intron (NM_175155, intron 7 of 19)	intron (NM_175155, intron 7 of 19)	104924.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	-0.223025737409983	-0.210412533623114	-0.214561948217416	0.18577201876023	0.234020125790572	-0.20947488617651	0.226675561604476	-0.217195367792314	1.18721134825781	0.626449591608101	1
Merged-chr14-64692042-2	chr14	64691942	64692142	+	960.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081177, intron 2 of 39)	intron (NM_001081177, intron 2 of 39)	39511.0	NM_001081177	16554.0	Mm.23611	NM_001081177	ENSMUSG00000060012	Kif13b	5330429L19Rik|6030414C01|AI429803|C130021D12Rik|GAKIN	kinesin family member 13B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120086902-4	chr11	120086781	120086981	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009734)	promoter-TSS (NM_009734)	-54.0	NM_009734	12009.0	Mm.2556	NM_009734	ENSMUSG00000039781	Cep131	AZ1|Azi|Azi1	centrosomal protein 131	protein-coding	4.46046841037249	4.82621814066553	4.81356244522968	4.77287041976151	5.47143110649394	5.28137297442412	5.77178447840535	5.12368757900782	0.843352703899594	0.00716355165016909	0.0861205337662612
Merged-chr15-98982279-2	chr15	98982179	98982379	+	635.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3686.0	NR_045991	75951.0	Mm.441657	NR_045991	ENSMUSG00000097587	4930578M01Rik	3010001K12Rik	RIKEN cDNA 4930578M01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4767698-2	chr16	4767598	4767798	+	831.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001358082, exon 6 of 6)	3' UTR (NM_001358082, exon 6 of 6)	10752.0	NM_001357050	15369.0	Mm.272866	NM_010443	ENSMUSG00000004070	Hmox2	HO-2|HO2	heme oxygenase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-73599341-2	chr15	73599241	73599441	+	818.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357747, intron 2 of 7)	intron (NM_001357747, intron 2 of 7)	-2815.0	NM_001168255	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4881521-2	chr16	4881421	4881621	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-1670.0	NM_145359	207740.0	Mm.268895	NM_145359	ENSMUSG00000039568	Ubald1	1500031H01Rik|BC013706|Fam100a	UBA-like domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-35898229-3	chr16	35898136	35898336	+	861.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Rod|LINE|L1	-26854.0	NM_001039530	547253.0	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-119356916-4	chr12	119356826	119357026	+	820.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-86484.0	NM_001163136	238455.0	Mm.31376	NM_001163136	ENSMUSG00000041886	Macc1	4732474O15Rik|Gm267	metastasis associated in colon cancer 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-56971594-2	chr1	56971494	56971694	+	670.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_139146)	promoter-TSS (NM_139146)	125.0	NR_024326	329160.0	Mm.419039	NR_024325	ENSMUSG00000087022	9130024F11Rik	B530002L08|EG329160	RIKEN cDNA 9130024F11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152043664-3	chr1	152043569	152043769	+	899.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197990, intron 1 of 5)	intron (NM_197990, intron 1 of 5)	46651.0	NM_197990	69399.0	Mm.278031	NM_197990	ENSMUSG00000032666	1700025G04Rik	2610510E02Rik|2900042O04Rik	RIKEN cDNA 1700025G04 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-89353355-1	chr4	89353255	89353455	+	921.0	f0_balb.idr	intron (NR_132431, intron 2 of 9)	intron (NR_132431, intron 2 of 9)	-42323.0	NM_007670	12579.0	Mm.423094	NM_007670	ENSMUSG00000073802	Cdkn2b	AV083695|INK4b|MTS2|p15|p15(INK4b)|p15INK4b	cyclin dependent kinase inhibitor 2B	protein-coding	0.416648764830636	0.271396533468777	0.593413847687456	0.559751520478343	0.0925954800577221	0.105209450401594	0.101054486602627	0.0975471804942158	-3.9614114866438	0.0518690468263369	1
Merged-chr15-33183874-4	chr15	33183795	33183995	+	859.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018755, intron 2 of 8)	intron (NM_018755, intron 2 of 8)	100766.0	NM_176073	54381.0	Mm.158251	NM_018755	ENSMUSG00000039007	Cpq	1190003P12Rik|2610034C17Rik|Hls2|Lal-1|Pgcp	carboxypeptidase Q	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-90187027-2	chr16	90186927	90187127	+	877.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33715.0	NM_011434	20655.0	Mm.276325	NM_011434	ENSMUSG00000022982	Sod1	B430204E11Rik|Cu/Zn-SOD|CuZnSOD|Ipo-1|Ipo1|SODC|Sod-1	superoxide dismutase 1, soluble	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6313373-2	chr19	6313273	6313473	+	621.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033342, intron 10 of 36)	intron (NM_001033342, intron 10 of 36)	6916.0	NM_001033342	240505.0	Mm.329622	NM_001033342	ENSMUSG00000024769	Cdc42bpg	BC046418|MRCKgamma	CDC42 binding protein kinase gamma (DMPK-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46327203-3	chr19	46327129	46327329	+	746.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133694)	promoter-TSS (NM_133694)	-73.0	NM_028627	73728.0	Mm.268532	NM_028627	ENSMUSG00000037126	Psd	1110007H17Rik|A930015K15|Efa6|Efa6a|Psdl|mKIAA2011	pleckstrin and Sec7 domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-67816891-2	chr5	67816791	67816991	+	791.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038999, intron 1 of 36)	intron (NM_001038999, intron 1 of 36)	30540.0	NM_009727	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-46519667-2	chr18	46519567	46519767	+	587.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173423, intron 2 of 2)	Lx6|LINE|L1	6304.0	NM_173423	240263.0	Mm.38249	NM_173423	ENSMUSG00000033319	Fem1c	2610312A07Rik|3632443A22Rik|AI646567	fem-1 homolog c (C.elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-151025331-4	chr1	151025238	151025438	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	UCON26|Unknown|Unknown	-31903.0	NM_001024720	545370.0	Mm.379425	NM_001024720	ENSMUSG00000066842	Hmcn1	EG545370|FIBL-6|Gm201	hemicentin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-45297468-2	chr9	45297368	45297568	+	575.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21632.0	NM_001013373	214531.0	Mm.394987	NM_001013373	ENSMUSG00000037129	Tmprss13	BC010843|Tpmrss13	transmembrane protease, serine 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-47121480-1	chr6	47121380	47121580	+	717.0	f1_balb.idr	intron (NM_001004357, intron 20 of 23)	intron (NM_001004357, intron 20 of 23)	-122916.0	NM_025771	66797.0	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	0.132581052276805	0.261426517451673	-0.222508822206793	-0.225868808555316	-0.230606468164812	0.270674507043583	-0.22154716535222	-0.225282270964644	-0.739701369011827	0.760408160023539	1
Merged-chr1-152595465-2	chr1	152595365	152595565	+	619.291626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346119, intron 2 of 17)	intron (NM_001346119, intron 2 of 17)	29752.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-22156791-4	chr9	22156710	22156910	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001082532)	promoter-TSS (NM_001082532)	-36.0	NM_001082532	66268.0	Mm.28924	NM_025457	ENSMUSG00000010607	Pigyl	1810008A14Rik|PIG-Y|Pigy	phosphatidylinositol glycan anchor biosynthesis, class Y-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-100734765-4	chr3	100734670	100734870	+	959.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-49297.0	NM_010763	17156.0	Mm.271617	NM_010763	ENSMUSG00000008763	Man1a2	AI428775|AI528764|AI854422|Man1b|PCR2	mannosidase, alpha, class 1A, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36270800-4	chr1	36270694	36270894	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153408, intron 1 of 3)	intron (NM_153408, intron 1 of 3)	2631.0	NM_153408	214854.0	Mm.389110	NM_153408	ENSMUSG00000047180	Neurl3	2010300P06Rik|Lincr	neuralized E3 ubiquitin protein ligase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-88565232-1	chr5	88565132	88565332	+	1000.0	f0_c57.idr	exon (NM_001289775, exon 1 of 13)	exon (NM_001289775, exon 1 of 13)	192.0	NM_001289775	52822.0	Mm.270469	NM_027530	ENSMUSG00000029291	Rufy3	2810428M05Rik|6330416M07Rik|AW455998|AW538594|D5Bwg0860e|Ripx|Rpipx	RUN and FYVE domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191202441-2	chr1	191202341	191202541	+	792.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-19108.0	NM_007498	11910.0	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91358640-3	chr16	91358528	91358728	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14155.0	NM_010509	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-86535413-2	chr17	86535313	86535513	+	556.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011104, intron 10 of 14)	intron (NM_011104, intron 10 of 14)	-218451.0	NM_010137	13819.0	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-113387230-2	chr14	113387130	113387330	+	592.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	-1444735.0	NR_045661	75822.0	Mm.410813	NR_045661	ENSMUSG00000115320	4930524C18Rik	-	RIKEN cDNA 4930524C18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119049649-2	chr11	119049585	119049785	+	933.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8772.0	NM_013926	30951.0	Mm.99953	NM_013926	ENSMUSG00000025578	Cbx8	Pc3	chromobox 8	protein-coding	-0.453422159518752	-0.441743222540291	-0.445578018511639	-0.44853098770836	-0.0770340191228511	0.173248355772649	-0.444732939609478	-0.284163162928765	3.51353816272636	0.159674616838159	1
Merged-chr15-72809201-4	chr15	72809112	72809312	+	976.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_002864, exon 1 of 1)	non-coding (NR_002864, exon 1 of 1)	1112.0	NR_002864	353342.0	Mm.440245	NR_002864	ENSMUSG00000106847	Peg13	-	paternally expressed 13	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-20077301-4	chr10	20077218	20077418	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008580, intron 12 of 29)	intron (NM_008580, intron 12 of 29)	-71602.0	NM_008635	17761.0	Mm.20928	NM_008635	ENSMUSG00000019996	Map7	E-MAP-115|MAP-7|Mtap7|R75000|mshi|mste|ste	microtubule-associated protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-80327514-4	chr11	80327412	80327612	+	985.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139228, intron 4 of 8)	intron (NM_139228, intron 4 of 8)	26600.0	NM_139228	246104.0	Mm.194148	NM_139228	ENSMUSG00000017692	Rhbdl3	AI847581|Rhbdl4|Rhomr1|Vrho	rhomboid like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-14783924-4	chr18	14783818	14784018	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001100449, exon 1 of 15)	exon (NM_001100449, exon 1 of 15)	673.0	NM_001100449	72504.0	Mm.312233	NM_001100449	ENSMUSG00000054321	Taf4b	105kDa|2610524B04Rik|4932409F03Rik|AW987595|TAFII-105|TAFII105|Taf2c2	TATA-box binding protein associated factor 4b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-94344856-2	chr11	94344756	94344956	+	758.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029600, intron 30 of 30)	intron (NM_029600, intron 30 of 30)	16855.0	NM_146024	71452.0	Mm.141054	NM_027799	ENSMUSG00000020864	Ankrd40	1110011C06Rik|5530600A18Rik|Gcap15	ankyrin repeat domain 40	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67595435-4	chr10	67595354	67595554	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23495.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-15395296-2	chr17	15395196	15395396	+	562.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024203)	promoter-TSS (NM_024203)	-906.0	NM_001357822	67544.0	Mm.35039	NM_024203	ENSMUSG00000014763	Fam120b	4932442K08Rik|AW049283|AW413338|CCPG|Pgcc1|mKIAA1838	family with sequence similarity 120, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-127484759-2	chr2	127484659	127484859	+	785.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019789, intron 2 of 8)	intron (NM_019789, intron 2 of 8)	-2260.0	NM_001111331	56461.0	Mm.315292	NM_019789	ENSMUSG00000079056	Kcnip3	4933407H12Rik|AI413860|Csen|DREAM|KChIP3|R74849	Kv channel interacting protein 3, calsenilin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-41289179-2	chr7	41289079	41289279	+	726.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001033782, exon 3 of 3)	exon (NM_001033782, exon 3 of 3)	4852.0	NM_001033782	434172.0	Mm.247214	NM_001033782	ENSMUSG00000072259	Gm5592	EG434172	predicted gene 5592	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83655870-4	chr11	83655785	83655985	+	996.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6507.0	NM_011337	20302.0	Mm.1282	NM_011337	ENSMUSG00000000982	Ccl3	AI323804|G0S19-1|LD78alpha|MIP-1alpha|MIP1-(a)|MIP1-alpha|Mip1a|Scya3	chemokine (C-C motif) ligand 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-79688604-2	chr15	79688504	79688704	+	886.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028792)	promoter-TSS (NM_028792)	-732.0	NM_028792	74158.0	Mm.323393	NM_028792	ENSMUSG00000022426	Josd1	1300006C06Rik|mKIAA0063	Josephin domain containing 1	protein-coding	2.25827019750404	1.04678913317937	1.25573672207752	1.80906101328574	1.916531280448	1.95139137484271	1.617087937979	1.01293798151886	-0.0563662713835576	0.962971031157134	0.998431161219273
Merged-chr4-97821882-2	chr4	97821782	97821982	+	575.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010905, intron 2 of 10)	intron (NM_010905, intron 2 of 10)	44256.0	NM_010905	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94408868-4	chr10	94408767	94408967	+	962.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 1 of 4)	intron (NM_001359762, intron 1 of 4)	96918.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6045379-2	chr19	6045279	6045479	+	720.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1197.0	NM_028769	74126.0	Mm.149870	NM_028769	ENSMUSG00000024807	Syvn1	1200010C09Rik|AW211966|C85322|D530017H19Rik|Hrd1	synovial apoptosis inhibitor 1, synoviolin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-85270148-1	chr1	85270048	85270248	+	799.5	f1_balb.idr	5' UTR (NM_001037909, exon 1 of 7)	5' UTR (NM_001037909, exon 1 of 7)	418.0	NM_175219	620078.0	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik	RIKEN cDNA C130026I21 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-53414998-4	chr15	53414878	53415078	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	-68795.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85305674-4	chr12	85305579	85305779	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145138, intron 19 of 21)	intron (NM_145138, intron 19 of 21)	17088.0	NM_172414	72350.0	Mm.158810	NM_172414	ENSMUSG00000045064	Zc2hc1c	2810002I04Rik|AV046379|Fam164c	zinc finger, C2HC-type containing 1C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-60435113-3	chr13	60435018	60435218	+	884.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-166829.0	NM_001285917	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	1.61010498865161	1.21992140863005	1.75367704941525	1.89043288991417	1.40631439825709	0.997635834435438	1.76841802243419	1.16683392027304	-0.948721633379428	0.426561275028708	0.902094390915589
Merged-chr3-51416646-4	chr3	51416532	51416732	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053089, intron 1 of 19)	CpG	616.0	NM_053089	74838.0	Mm.275281	NM_053089	ENSMUSG00000063273	Naa15	5730450D16Rik|6330400I15|ASTBDN|Narg1|Tbdn-1|mNAT1	N(alpha)-acetyltransferase 15, NatA auxiliary subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-107775888-1	chr3	107775788	107775988	+	737.0	f0_c57.idr	Intergenic	Intergenic	-15419.0	NM_001113529	12977.0	Mm.795	NM_007778	ENSMUSG00000014599	Csf1	C87615|Csfm|MCSF|op	colony stimulating factor 1 (macrophage)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-54750749-3	chr14	54750648	54750848	+	908.711121	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016972, intron 3 of 10)	intron (NM_016972, intron 3 of 10)	31138.0	NM_016972	50934.0	Mm.276831	NM_016972	ENSMUSG00000022180	Slc7a8	AA408822|LAT2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	protein-coding	0.4632879726966	0.491991323037314	0.676063935783527	1.41213736156365	0.76457713845503	0.707589544343886	0.681780490922282	1.1646245127753	0.0203705917128133	0.989807485162459	1
Merged-chr14-69861597-4	chr14	69861487	69861687	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028560, intron 3 of 6)	intron (NM_028560, intron 3 of 6)	21180.0	NM_028526	73523.0	Mm.23509	NM_028526	ENSMUSG00000022085	Pebp4	PEBP-4	phosphatidylethanolamine binding protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-93080394-2	chr1	93080294	93080494	+	719.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001294150, intron 1 of 46)	intron (NM_001294150, intron 1 of 46)	2086.0	NM_001294150	16560.0	Mm.276408	NM_008440	ENSMUSG00000014602	Kif1a	ATSV|C630002N23Rik|Gm1626|Kns1	kinesin family member 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59729013-4	chr15	59728917	59729117	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	65942.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-22822996-2	chr2	22822896	22823096	+	627.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019456, intron 3 of 13)	intron (NM_019456, intron 3 of 13)	48669.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-32534278-4	chr17	32534178	32534378	+	965.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2279.0	NM_001356302	70101.0	Mm.30504	NM_024442	ENSMUSG00000048440	Cyp4f16	2310021J05Rik|AI746515	cytochrome P450, family 4, subfamily f, polypeptide 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-8836447-4	chr17	8836338	8836538	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011866, intron 1 of 21)	intron (NM_011866, intron 1 of 21)	-13547.0	NM_001347321	23984.0	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-97094433-4	chr7	97094330	97094530	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162477, intron 1 of 9)	MLT1G|LTR|ERVL-MaLR	12679.0	NM_010248	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	2.39511953821315	2.68832690582855	2.14412402258933	1.34039738131612	1.86008313520026	2.49609219371698	2.61791783420136	2.33852355949784	0.272916653641759	0.764731817020165	0.998431161219273
Merged-chr11-79023591-4	chr11	79023490	79023690	+	989.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045873)	promoter-TSS (NR_045873)	-7.0	NR_045873	790910.0	Mm.440410	NR_045873		Gm11201	-	predicted gene 11201	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-59294369-4	chr9	59294276	59294476	+	958.2666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359282, intron 1 of 6)	intron (NM_001359282, intron 1 of 6)	2804.0	NM_028121	72141.0	Mm.22456	NM_028121	ENSMUSG00000025236	Adpgk	2610017G09Rik|Adp-gk|C77577	ADP-dependent glucokinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-80128756-4	chr12	80128647	80128847	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033514, intron 2 of 2)	intron (NR_033514, intron 2 of 2)	4097.0	NR_033514	69548.0	Mm.269712	NR_033514		2310015A10Rik	5330419I17Rik	RIKEN cDNA 2310015A10 gene	ncRNA	1.68474523416929	0.96682051741502	0.727002479581667	1.21766480266357	1.7019392627553	0.743327510907105	0.729967423558597	1.34888123803492	0.012093215900294	0.993528805240787	0.998431161219273
Merged-chr2-167752999-4	chr2	167752904	167753104	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61827.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-25178015-4	chr12	25177915	25178115	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48841.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-139198810-1	chr4	139198710	139198910	+	1000.0	f1_c57bl6.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	4699.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	0.157932504971476	0.171595067271369	0.167072027056685	0.543834543119257	0.158772805029201	0.172620893022133	0.769770192814839	0.728797630629659	1.83135318635361	0.399941188540542	1
Merged-chr7-66103178-2	chr7	66103078	66103278	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6337.0	NM_001081163	269941.0	Mm.333916	NM_001081163	ENSMUSG00000032640	Chsy1	mKIAA0990	chondroitin sulfate synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-84290761-6	chr11	84290707	84290907	+	888.673584	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133360, intron 28 of 53)	intron (NM_133360, intron 28 of 53)	95369.0	NM_133360	107476.0	Mm.31374	NM_133360	ENSMUSG00000020532	Acaca	A530025K05Rik|Acac|Acc1|Gm738	acetyl-Coenzyme A carboxylase alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19601946-2	chr7	19601846	19602046	+	545.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_125834, intron 2 of 19)	intron (NR_125834, intron 2 of 19)	2415.0	NR_125835	53609.0	Mm.20913	NM_016680	ENSMUSG00000061028	Clasrp	Clasp|Sfrs16|Srsf16|Swap2	CLK4-associating serine/arginine rich protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134559753-3	chr6	134559685	134559885	+	974.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008514, intron 1 of 22)	intron (NM_008514, intron 1 of 22)	7128.0	NM_008514	16974.0	Mm.321990	NM_008514	ENSMUSG00000030201	Lrp6	C030016K15Rik|Cd|Gw|ska26|ska<m26Jus>|skax26	low density lipoprotein receptor-related protein 6	protein-coding	4.14225521795186	3.44945341409559	2.51014296868371	2.89060886245997	4.52092908788966	4.04986706962067	3.62993981805575	3.73912020678162	0.899914493312706	0.115178083892707	0.531964895394323
Merged-chr17-50215405-2	chr17	50215305	50215505	+	577.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	-23803.0	NR_131975	446210.0	Mm.378184	NM_001004437	ENSMUSG00000067103	AY702103	STDP2	cDNA sequence AY702103	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-51096026-2	chr2	51095926	51096126	+	962.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53085.0	NM_028810	74194.0	Mm.46497	NM_028810	ENSMUSG00000017144	Rnd3	2610017M01Rik|AI661404|Arhe|Rhoe	Rho family GTPase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-5750148-3	chr5	5750048	5750248	+	810.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027399)	promoter-TSS (NM_027399)	-831.0	NM_027399	70358.0	Mm.85429	NM_027399	ENSMUSG00000015652	Steap1	2410007B19Rik|Prss24|Steap	six transmembrane epithelial antigen of the prostate 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-108612166-4	chr8	108612061	108612261	+	963.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27484.0	NR_077224	109215.0	Mm.65282	NR_077224	ENSMUSG00000110613	Lncbate1	3010033K07Rik|Lnc-BATE1	brown adipose tissue enriched long non-coding RNA 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-102431186-4	chr11	102431108	102431308	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008175, intron 1 of 12)	intron (NM_008175, intron 1 of 12)	886.0	NM_008175	14824.0	Mm.1568	NM_008175	ENSMUSG00000034708	Grn	Pgrn|epithelin	granulin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-59344468-4	chr19	59344377	59344577	+	789.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033222, intron 1 of 4)	intron (NM_001033222, intron 1 of 4)	1303.0	NM_001033222	107368.0	Mm.27250	NM_001033222	ENSMUSG00000074746	Pdzd8	A630041P07Rik|AV329468|AW228944|Pdzk8	PDZ domain containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-79694005-3	chr15	79693920	79694120	+	902.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013818, intron 1 of 11)	intron (NM_013818, intron 1 of 11)	3124.0	NM_013818	14904.0	Mm.19080	NM_013818	ENSMUSG00000042535	Gtpbp1	AL022987|AW045683|C85212|GP-1|Gtpbp	GTP binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-86850285-2	chr6	86850185	86850385	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028298)	promoter-TSS (NR_028298)	768.0	NM_001040106	269774.0	Mm.221038	NM_177762	ENSMUSG00000057230	Aak1	5530400K14Rik|9630042K20|AU067724|AU067726|BC028270|C79663|D6Ertd245e|R75501|mKIAA1048	AP2 associated kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-106283898-4	chr6	106283788	106283988	+	962.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109749, intron 5 of 25)	intron (NM_001109749, intron 5 of 25)	165123.0	NM_001109751	269784.0	Mm.321683	NM_173004	ENSMUSG00000064293	Cntn4	9630050B05|Axcam|BIG-2	contactin 4	protein-coding	3.90963959117064	3.82721346755753	3.6429561754503	3.11631132591842	1.31351763950584	2.30774377093176	1.45367551292889	2.73315401031997	-2.8282276633941	0.000247329907989843	0.00636794900442518
Merged-chr12-87325642-4	chr12	87325548	87325748	+	960.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011479, intron 9 of 11)	intron (NM_011479, intron 9 of 11)	-25943.0	NM_001290302	217738.0	Mm.219363	NM_001290302	ENSMUSG00000050671	Ism2	Gm264|Thsd3	isthmin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-33464091-3	chr18	33463996	33464196	+	989.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045415)	promoter-TSS (NR_045415)	-67.0	NM_001109988	27528.0	Mm.407415	NM_053078	ENSMUSG00000042834	Nrep	AI325076|D0H4S114|Harp|P311|PTZ17|SEZ17	neuronal regeneration related protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-50670583-4	chr2	50670501	50670701	+	788.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-239083.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-78203942-2	chr10	78203842	78204042	+	690.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081055, exon 14 of 23)	exon (NM_001081055, exon 14 of 23)	-18793.0	NM_029546	110816.0	Mm.103522	NM_029546	ENSMUSG00000032834	Pwp2	6530411D08Rik|Pwp2h|wdp103	PWP2 periodic tryptophan protein homolog (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-73179748-2	chr15	73179648	73179848	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153178, intron 1 of 18)	intron (NM_153178, intron 1 of 18)	5199.0	NM_153178	239528.0	Mm.23095	NM_153178	ENSMUSG00000036698	Ago2	1110029L17Rik|2310051F07Rik|AI225898|AL022874|AW546247|Eif2c2|Gerp95|Gm10365|mKIAA4215	argonaute RISC catalytic subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-122940512-4	chr7	122940415	122940615	+	825.104187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29944.0	NR_045614	73951.0	Mm.389936	NR_045614		4930413G21Rik	-	RIKEN cDNA 4930413G21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-10788369-2	chr16	10788269	10788469	+	547.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_013694, exon 1 of 2)	exon (NM_013694, exon 1 of 2)	286.0	NM_013694	21959.0	Mm.206798	NM_013694	ENSMUSG00000043050	Tnp2	TP2|Tp-2	transition protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-86487401-4	chr6	86487302	86487502	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040292, intron 1 of 1)	intron (NR_040292, intron 1 of 1)	825.0	NR_040293	381792.0	Mm.333223	NR_040292	ENSMUSG00000101655	2310040G24Rik	-	RIKEN cDNA 2310040G24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102422043-2	chr12	102421943	102422143	+	633.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011175, intron 2 of 13)	B4|SINE|B4	17770.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	-1.7024385483431	-1.81249224917775	-1.82134771053534	-1.82862185015837	-1.70038292649591	-1.81057323376012	-1.81934302819017	-1.82731978264371	0.0376840119903864	0.991491645451152	1
Merged-chr7-135050940-2	chr7	135050840	135051040	+	860.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033420, intron 29 of 51)	intron (NM_001033420, intron 29 of 51)	-112510.0	NM_001143802	627214.0	Mm.323610	NM_001143802	ENSMUSG00000073805	Fam196a	B830028B13Rik	family with sequence similarity 196, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-90302492-2	chr7	90302392	90302592	+	953.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_110348, exon 1 of 9)	non-coding (NR_110348, exon 1 of 9)	137.0	NR_110348	83671.0	Mm.26751	NM_031394	ENSMUSG00000030616	Sytl2	AI266830|Slp2|mKIAA1597	synaptotagmin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-24603844-4	chr18	24603764	24603964	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_139143)	promoter-TSS (NM_139143)	-47.0	NM_139143	106957.0	Mm.21688	NM_139143	ENSMUSG00000024270	Slc39a6	Ermelin|Zip6	solute carrier family 39 (metal ion transporter), member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-11187309-2	chr8	11187209	11187409	+	577.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-125496.0	NM_009932	12827.0	Mm.181021	NM_009932	ENSMUSG00000031503	Col4a2	Col4a-2	collagen, type IV, alpha 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-142948928-2	chr3	142948828	142949028	+	744.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	66433.0	NR_152127	320229.0	Mm.187582	NR_152127		9530052C20Rik	-	RIKEN cDNA 9530052C20 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-46298282-2	chr17	46298182	46298382	+	792.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286013, intron 1 of 5)	CpG	354.0	NM_001286013	106565.0	Mm.23633	NM_134120	ENSMUSG00000047428	Dlk2	AI413481|DLK-2|Egfl9	delta like non-canonical Notch ligand 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101415744-2	chr7	101415644	101415844	+	547.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5947.0	NM_001008548	207728.0	Mm.247564	NM_001008548	ENSMUSG00000030653	Pde2a	CGS-PDE|cGSPDE	phosphodiesterase 2A, cGMP-stimulated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-91691747-2	chr6	91691647	91691847	+	748.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_009320, intron 1 of 14)	intron (NM_009320, intron 1 of 14)	7680.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-86199556-2	chr15	86199456	86199656	+	570.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13415.0	NM_145475	223753.0	Mm.222685	NM_145475	ENSMUSG00000035891	Cerk	AI848610|D330016D08Rik|mKIAA1646	ceramide kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-22266678-2	chr16	22266578	22266778	+	922.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009186)	promoter-TSS (NM_009186)	-673.0	NM_001330555	20462.0	Mm.210352	NM_009186	ENSMUSG00000022858	Tra2b	5730405G21Rik|D16Ertd266e|SIG-41|Sfrs10|Silg41|TRA2beta	transformer 2 beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-104371300-3	chr8	104371193	104371393	+	865.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153582, intron 1 of 3)	B1_Mur4|SINE|Alu	24514.0	NM_153582	97487.0	Mm.29658	NM_153582	ENSMUSG00000096188	Cmtm4	Cklfsf4|D19397|Gm9853	CKLF-like MARVEL transmembrane domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30063730-2	chr2	30063630	30063830	+	588.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023871, intron 1 of 7)	intron (NM_023871, intron 1 of 7)	1734.0	NM_023871	56086.0	Mm.326055	NM_023871	ENSMUSG00000054766	Set	2610030F17Rik|5730420M11Rik|AA407739|I-2PP2A|StF-IT-1|TAF-I	SET nuclear oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-145303800-4	chr6	145303707	145303907	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53255.0	NR_045598	100039495.0	Mm.121014	NR_045598	ENSMUSG00000086013	Gm15706	-	predicted gene 15706	ncRNA	4.52029396803432	4.34257835470029	4.99312091642274	4.5814970428461	4.44138661544118	3.54572065839243	4.10712155437765	3.6870802014369	-0.816019373438898	0.0521696419537926	0.334365044958121
Merged-chr2-164455049-4	chr2	164454944	164455144	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5927.0	NM_025575	66460.0	Mm.44218	NM_025575	ENSMUSG00000045503	Sys1	2610042O14Rik|AI266964|C87389	SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-53455677-3	chr6	53455588	53455788	+	807.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001327821, intron 5 of 10)	intron (NM_001327821, intron 5 of 10)	-117686.0	NM_172728	231991.0	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-84381239-3	chr2	84381101	84381301	+	589.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018782, intron 2 of 15)	intron (NM_018782, intron 2 of 15)	44065.0	NM_018782	54598.0	Mm.75467	NM_018782	ENSMUSG00000059588	Calcrl	AV071593|CRLR	calcitonin receptor-like	protein-coding	-0.652730458705985	-0.901230504172763	-0.90922183295875	-0.911372894819538	-0.352564959149449	-0.898600369853294	-0.908605972400679	-0.910997479715934	1.18941392580168	0.704270754228478	1
Merged-chr8-41364122-4	chr8	41364033	41364233	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019734, intron 1 of 13)	intron (NM_019734, intron 1 of 13)	10564.0	NM_019734	11886.0	Mm.22547	NM_019734	ENSMUSG00000031591	Asah1	2310081N20Rik|AC|Asah	N-acylsphingosine amidohydrolase 1	protein-coding	4.44865303704975	5.11708094883411	4.50456517257301	5.20689071964973	5.09691803900198	5.39988028784587	5.27833549583797	4.65155111145927	0.325185747844236	0.345743089009057	0.846691845543068
Merged-chr8-95024578-4	chr8	95024450	95024650	+	859.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173036, intron 2 of 11)	intron (NM_173036, intron 2 of 11)	6858.0	NM_173036	54672.0	Mm.27995	NM_173036	ENSMUSG00000060470	Adgrg3	A030001G24Rik|AW214383|Gpr97|Pb1|Pb99	adhesion G protein-coupled receptor G3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56132832-4	chr17	56132669	56132869	+	915.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013662, exon 2 of 17)	exon (NM_013662, exon 2 of 17)	1083.0	NM_013662	20359.0	Mm.8029	NM_013662	ENSMUSG00000001227	Sema6b	Sema|Seman|VIb|semaZ	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-146107629-4	chr3	146107526	146107726	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172864, intron 1 of 22)	intron (NM_172864, intron 1 of 22)	410.0	NM_172864	242253.0	Mm.235040	NM_172864	ENSMUSG00000043020	Wdr63	4931433A13Rik|IC140|Ida7	WD repeat domain 63	protein-coding	1.96913045492	2.53953784419917	1.49288824221313	1.45794055566943	2.5683834624804	2.35089593150172	2.02411646079335	1.65659574792384	0.62384750563392	0.5219209605238	0.947836760490745
Merged-chr13-92241590-4	chr13	92241497	92241697	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010829, intron 19 of 23)	intron (NM_010829, intron 19 of 23)	-113186.0	NM_010049	13361.0	Mm.23695	NM_010049	ENSMUSG00000021707	Dhfr	8430436I03Rik|AA607882|AI662710|AW555094	dihydrofolate reductase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-16874486-6	chr12	16874384	16874584	+	814.8388669999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-20494.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	2.48396442529467	1.85978660252116	2.07274949758251	1.15925889343699	2.12409050463409	1.87366007614375	2.49534487176307	1.16309950683482	0.0470339912775026	0.965807581858811	0.998431161219273
Merged-chr1-40087671-4	chr1	40087581	40087781	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360800, intron 1 of 8)	MER5A|DNA|hAT-Charlie	1588.0	NM_001360800	16178.0	Mm.1349	NM_010555	ENSMUSG00000026073	Il1r2	CD121b|Il1r-2	interleukin 1 receptor, type II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-145249550-4	chr6	145249459	145249659	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045598)	promoter-TSS (NR_045598)	672.0	NM_021284	16653.0	Mm.383182	NM_021284	ENSMUSG00000030265	Kras	AI929937|K-Ras|K-Ras 2|K-ras|Ki-ras|Kras-2|Kras2|c-K-ras|c-Ki-ras|p21B|ras	Kirsten rat sarcoma viral oncogene homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-116327227-2	chr7	116327127	116327327	+	543.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	6963.0	NM_026533	68052.0	Mm.14798	NM_026533	ENSMUSG00000090862	Rps13	2700063M04Rik	ribosomal protein S13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-42052844-4	chr13	42052738	42052938	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007772, intron 1 of 8)	intron (NM_007772, intron 1 of 8)	817.0	NM_007772	110521.0	Mm.4808	NM_007772	ENSMUSG00000021366	Hivep1	Cryabp1	human immunodeficiency virus type I enhancer binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-23449262-3	chr13	23449136	23449336	+	805.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16665.0	NM_013483	12231.0	Mm.1420	NM_013483	ENSMUSG00000000706	Btn1a1	Btn	butyrophilin, subfamily 1, member A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-106692380-2	chr14	106692289	106692489	+	745.833374	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-205869.0	NR_045938	73631.0	Mm.48862	NR_045938	ENSMUSG00000099794	1700128A07Rik	-	RIKEN cDNA 1700128A07 gene	ncRNA	2.39092381805688	2.16134489604592	1.51283604086645	2.20651861668402	3.78327628693432	3.93616231972459	4.47154305768514	4.06307502115995	3.32203253083991	6.68534452342106e-07	4.62754405338495e-05
Merged-chr8-45415173-4	chr8	45415117	45415317	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4598.0	NM_126166	142980.0	Mm.33874	NM_126166	ENSMUSG00000031639	Tlr3	AI957183	toll-like receptor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-68475136-1	chr2	68475036	68475236	+	553.0	f1_balb.idr	Intergenic	Intergenic	-3155.0	NM_016866	53416.0	Mm.198414	NM_016866	ENSMUSG00000027030	Stk39	AW227544|AW556857|DCHT|RF005|Rnl5|SPAK	serine/threonine kinase 39	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-73970701-4	chr13	73970617	73970817	+	938.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153830, intron 2 of 9)	intron (NR_153830, intron 2 of 9)	6866.0	NM_027704	71164.0	Mm.66995	NM_027704	ENSMUSG00000069189	Zdhhc11	4933421L13Rik|DHHC-11|Zdhhc20	zinc finger, DHHC domain containing 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-11758635-2	chr18	11758535	11758735	+	693.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-80639.0	NM_001146287	63955.0	Mm.40717	NM_022021	ENSMUSG00000040957	Cables1	Cables|ik3-1	CDK5 and Abl enzyme substrate 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-99031579-2	chr6	99031479	99031679	+	735.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001197321, intron 4 of 17)	intron (NM_001197321, intron 4 of 17)	-3281.0	NM_001197322	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118154049-2	chr11	118153949	118154149	+	845.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24830.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-37137312-2	chr14	37137212	37137412	+	657.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A2|LTR|ERVL-MaLR	-1990.0	NM_078478	66092.0	Mm.182912	NM_078478	ENSMUSG00000041028	Ghitm	1010001P14Rik|C77840|MICS1|PTD010|Tmbim5	growth hormone inducible transmembrane protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-37540892-2	chr16	37540792	37540992	+	838.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001042499, intron 1 of 7)	MT2C_Mm|LTR|ERVL	998.0	NM_001042499	67657.0	Mm.28158	NM_026297	ENSMUSG00000022827	Rabl3	4930553C05Rik|AA958834	RAB, member RAS oncogene family-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-62921407-4	chr11	62921493	62921693	+	850.035706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29600.0	NM_025496	66338.0	Mm.46166	NM_025496	ENSMUSG00000042200	Cdrt4	1700019I23Rik	CMT1A duplicated region transcript 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-67074287-2	chr14	67074187	67074387	+	581.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1816.0	NM_001205188	71978.0	Mm.273997	NM_028032	ENSMUSG00000022052	Ppp2r2a	2410004D02Rik|mKIAA1541	protein phosphatase 2, regulatory subunit B, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-120934069-3	chr4	120933987	120934187	+	677.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005788, intron 5 of 5)	intron (NM_001005788, intron 5 of 5)	-9082.0	NM_001160043	73172.0	Mm.151436	NM_028457	ENSMUSG00000028629	Exo5	3110037I16Rik|AV297100|Dem1|Exo V|mExo5	exonuclease 5	protein-coding	1.25394484377064	2.04448082273306	0.685270549334398	0.67333994503858	1.14591347058163	0.703759207660969	1.40056651865022	1.06574493768802	-0.761920225315271	0.602780627287679	0.973565005745828
Merged-chr4-149322144-2	chr4	149322044	149322244	+	583.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12495.0	NR_131918	74310.0	Mm.440455	NR_131918	ENSMUSG00000085286	Ube4bos3	1700121F15Rik	ubiquitination factor E4B, opposite strand 3	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-53247902-2	chr18	53247802	53248002	+	860.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_029394, intron 1 of 6)	PB1D7|SINE|Alu	2240.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-109755734-2	chr8	109755634	109755834	+	799.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-17995.0	NM_001080930	52335.0	Mm.276770	NM_001080930	ENSMUSG00000069895	Atxn1l	AW558552|Boat|C330011L24Rik|D6Mgi37|D8Ertd587e	ataxin 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-110101037-4	chr9	110100933	110101133	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252683)	promoter-TSS (NM_001252683)	54.0	NM_001252683	72831.0	Mm.276305	NM_133347	ENSMUSG00000032480	Dhx30	2810477H02Rik|C130058C04Rik|Ddx30|HELG|Ret-CoR	DEAH (Asp-Glu-Ala-His) box polypeptide 30	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80041695-1	chr10	80041595	80041795	+	814.0	f1_c57bl6.idr	intron (NR_038088, intron 1 of 4)	B2_Mm1a|SINE|B2	-2036.0	NM_025554	66420.0	Mm.18579	NM_025554	ENSMUSG00000004667	Polr2e	2410021N14Rik|25kDa|AW208866|RPB5|XAP4	polymerase (RNA) II (DNA directed) polypeptide E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-184542504-4	chr1	184542395	184542595	+	964.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040472, intron 2 of 5)	intron (NR_040472, intron 2 of 5)	15196.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-42302556-1	chr6	42302456	42302656	+	660.0	f0_balb.idr	intron (NM_013491, intron 12 of 22)	intron (NM_013491, intron 12 of 22)	15871.0	NM_013491	12723.0	Mm.386757	NM_013491	ENSMUSG00000029862	Clcn1	Clc-1|Clc1|SMCC1|adr|mto|myotonia|nmf355	chloride channel, voltage-sensitive 1	protein-coding	-0.437007347665466	-0.797191490264241	-0.800211333297501	-0.802535497382973	-0.80581110115169	-0.794868846802553	-0.799545998340427	-0.269727996356238	0.669386369290816	0.825650091045202	1
Merged-chr8-36745023-1	chr8	36744923	36745123	+	644.0	f0_balb.idr	intron (NM_001194940, intron 5 of 17)	intron (NM_001194940, intron 5 of 17)	-11969.0	NM_001194941	50768.0	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	0.594738517341394	-0.160376595717845	0.654494212380977	-0.170892712303472	-0.177426433991357	-0.159047006023102	-0.16498868269762	-0.170088326630187	-3.99761189350934	0.0956049424317794	1
Merged-chr8-4236578-2	chr8	4236478	4236678	+	551.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028175, exon 3 of 3)	3' UTR (NM_028175, exon 3 of 3)	-2162.0	NM_011944	26400.0	Mm.3906	NM_011944	ENSMUSG00000002948	Map2k7	5930412N11Rik|JNKK 2|Jnkk2|MAPKK 7|MEK 7|Mapkk7|Mek7|Mkk7|Prkmk7|sek2	mitogen-activated protein kinase kinase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-34824601-2	chr1	34824501	34824701	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001160235, intron 3 of 7)	intron (NM_001160235, intron 3 of 7)	18449.0	NM_174997	214469.0	Mm.120151	NM_174997	ENSMUSG00000037503	Fam168b	Mani|mKIAA4042	family with sequence similarity 168, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-107178519-4	chr4	107178457	107178657	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025617)	promoter-TSS (NM_025617)	-73.0	NM_029565	56374.0	Mm.291192	NM_029565	ENSMUSG00000028618	Tmem59	1110001M20Rik|3110046P06Rik|AI256529|D4Ertd20e|MTDCF1|ORF18	transmembrane protein 59	protein-coding	5.17536754952252	4.66908721422153	4.35380666536051	5.13714136799462	5.25844115184703	4.64719989876373	3.60443400843289	5.06726656433321	-0.116106007943316	0.777430329842219	0.998431161219273
Merged-chr10-81187024-2	chr10	81186924	81187124	+	746.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001190473, intron 2 of 8)	intron (NM_001190473, intron 2 of 8)	3106.0	NM_007828	13144.0	Mm.10294	NM_007828	ENSMUSG00000034974	Dapk3	ZIPK|dlk	death-associated protein kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-90211090-2	chr7	90210983	90211183	+	986.7000119999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A2|LTR|ERVL-MaLR	54349.0	NM_029256	75338.0	Mm.487222	NM_029256	ENSMUSG00000030617	Ccdc83	4930549K11Rik|4930554C01Rik|4932423M01Rik	coiled-coil domain containing 83	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-64307546-4	chr13	64307381	64307581	+	916.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025370, intron 4 of 5)	MTE-int|LTR|ERVL-MaLR	5229.0	NM_025370	66129.0	Mm.491110	NM_025370	ENSMUSG00000021482	Aaed1	1110018J18Rik|AI849003	AhpC/TSA antioxidant enzyme domain containing 1	protein-coding	0.640512565239063	0.284237762451935	0.277593276942038	0.902532205899105	0.918757392092344	0.285734152895393	0.279059664392546	0.58183506513493	-0.0486022186708523	0.97979930294019	1
Merged-chr18-90579701-4	chr18	90579602	90579802	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001362365)	promoter-TSS (NM_001362365)	-123.0	NM_001362365	108168395.0	Mm.391131	NM_001362365	ENSMUSG00000110277	Gm45871	-	predicted gene 45871	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-5114689-2	chr18	5114589	5114789	+	651.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347449, intron 27 of 30)	intron (NM_001347449, intron 27 of 30)	51042.0	NR_153824	102637682.0	Mm.451914	NR_153824		Gm26682	Gm38715	predicted gene, 26682	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-27195190-4	chr5	27195098	27195298	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207282, intron 1 of 25)	intron (NM_207282, intron 1 of 25)	-66737.0	NM_001136060	13483.0	Mm.42078	NM_010075	ENSMUSG00000061576	Dpp6	B930011P16Rik|D5Buc3|D5Buc4|D5Buc5|DPP VI|Dpp-6|Gm1377|In(5)6H-p|Peplb|Rw	dipeptidylpeptidase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-62495796-2	chr10	62495696	62495896	+	665.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358965, intron 3 of 3)	intron (NM_001358965, intron 3 of 3)	-8991.0	NM_001358543	30930.0	Mm.260703	NM_133672	ENSMUSG00000020078	Vps26a	AA407240|HB58|Vps26	VPS26 retromer complex component A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-84152057-2	chr17	84151957	84152157	+	618.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35890.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-103088799-3	chr14	103088701	103088901	+	729.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360342, intron 4 of 4)	ORR1E|LTR|ERVL-MaLR	10203.0	NM_001360341	50789.0	Mm.214746	NM_015822	ENSMUSG00000022124	Fbxl3	AU041772|AW212966|FBK|Fbl3a|Fbxl3a|Ovtm|Play68	F-box and leucine-rich repeat protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80067401-3	chr7	80067296	80067496	+	786.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045695, intron 2 of 2)	MER2|DNA|TcMar-Tigger	7861.0	NR_045695	100859962.0	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	-1.20406370813143	-1.56956373024278	-1.57884638916872	-1.58647144159385	-1.598104728449	-1.56755213932999	-1.57674499865798	-1.58510656085539	-1.70745470802464	0.626337835847419	1
Merged-chr13-100453332-3	chr13	100453221	100453421	+	969.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008670)	promoter-TSS (NM_008670)	-457.0	NM_008670	17940.0	Mm.6898	NM_008670	ENSMUSG00000021640	Naip1	AV364616|Birc1a|D13Lsd1|Naip|Naip-rs1	NLR family, apoptosis inhibitory protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19465994-4	chr7	19465915	19466115	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7521.0	NM_172279	232944.0	Mm.260504	NM_172279	ENSMUSG00000030397	Mark4	2410090P21Rik|C79806|Markl1	MAP/microtubule affinity regulating kinase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-9635670-4	chr14	9635565	9635765	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360141, intron 8 of 9)	intron (NM_001360141, intron 8 of 9)	-248430.0	NR_030680	100042415.0	Mm.235938	NR_030680	ENSMUSG00000089686	Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-9705940-4	chr4	9705841	9706041	+	963.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-36597.0	NM_001290367	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127557573-5	chr10	127557445	127557645	+	892.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008512, exon 49 of 89)	exon (NM_008512, exon 49 of 89)	-22986.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	1.56985231414623	1.03477347322393	1.82484708622026	1.87282676327504	2.03054687621384	1.03886426037466	1.2439731577787	1.88318956156159	0.0297165255614537	0.980561621126761	0.998431161219273
Merged-chr11-51224192-3	chr11	51224096	51224296	+	963.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3778.0	NR_110444	71297.0	Mm.390420	NR_110444	ENSMUSG00000086646	Platr20	5133400J02Rik	pluripotency associated transcript 20	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-75079557-2	chr5	75079457	75079657	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3956.0	NM_133256	14843.0	Mm.218752	NM_133256	ENSMUSG00000035946	Gsx2	Gsh-2|Gsh2	GS homeobox 2	protein-coding	-1.84446540621454	-1.66703209084435	-1.82297003008319	-1.83062437091832	-1.84230234211872	-1.6650127732569	-1.82086056797065	-1.82925424756847	0.037684011990387	0.991491645451152	1
Merged-chr10-117452335-4	chr10	117452244	117452444	+	861.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4909.0	NR_152734	102634600.0	Mm.399106	NR_152734	ENSMUSG00000112344	Gm32141	-	predicted gene, 32141	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-4964305-2	chr5	4964205	4964405	+	553.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011074, intron 10 of 14)	RMER13A1|LTR|ERVK	-206089.0	NM_021457	14362.0	Mm.246003	NM_021457	ENSMUSG00000044674	Fzd1	AW227548|FZ-1|Fz1	frizzled class receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-107764790-2	chr13	107764690	107764890	+	623.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 5 of 14)	intron (NM_145456, intron 5 of 14)	77393.0	NR_045900	72257.0	Mm.234155	NR_045900	ENSMUSG00000102000	1700006H21Rik	-	RIKEN cDNA 1700006H21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-71008496-4	chr11	71008383	71008583	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001291147, exon 7 of 7)	3' UTR (NM_001291147, exon 7 of 7)	-4051.0	NM_178367	216877.0	Mm.35399	NM_178367	ENSMUSG00000040620	Dhx33	3110057P17Rik|9430096J02Rik|Ddx33	DEAH (Asp-Glu-Ala-His) box polypeptide 33	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-18396681-6	chr16	18396593	18396793	+	942.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001272031, intron 1 of 16)	intron (NM_001272031, intron 1 of 16)	4130.0	NM_001272032	11877.0	Mm.293599	NM_033474	ENSMUSG00000000325	Arvcf	-	armadillo repeat gene deleted in velocardiofacial syndrome	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166450687-2	chr2	166450587	166450787	+	613.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_015558, intron 1 of 2)	intron (NR_015558, intron 1 of 2)	3236.0	NR_015558	319684.0	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-63123907-2	chr9	63123807	63124007	+	776.916687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23073.0	NM_172446	207667.0	Mm.36349	NM_172446	ENSMUSG00000022245	Skor1	AV273001|C230094B15Rik|Corl1|Lbxcor1	SKI family transcriptional corepressor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-34026905-4	chr11	34026803	34027003	+	895.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155520, intron 4 of 4)	MTB|LTR|ERVL-MaLR	-20025.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-14022028-3	chr13	14021933	14022133	+	859.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178337, intron 3 of 16)	MMVL30-int|LTR|ERV1	17605.0	NR_130788	70430.0	Mm.260209	NM_178337	ENSMUSG00000039233	Tbce	2610206D02Rik|C530005D02Rik|pmn	tubulin-specific chaperone E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-94325703-2	chr1	94325603	94325803	+	789.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-273150.0	NM_008798	18566.0	Mm.5024	NM_008798	ENSMUSG00000026285	Pdcd1	Ly101|PD-1|Pdc1	programmed cell death 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-8505807-4	chr10	8505708	8505908	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177387, intron 1 of 7)	intron (NM_177387, intron 1 of 7)	13017.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	1.46121592908224	2.28862482284949	1.71466550081914	1.66497911063207	1.33722898399077	1.48403194238658	1.25475589051702	1.39732606072426	-1.56107779724579	0.155761776732618	0.610928767307068
Merged-chr2-26975163-2	chr2	26975063	26975263	+	841.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001322, intron 2 of 28)	intron (NM_001001322, intron 2 of 28)	1747.0	NM_001290465	279028.0	Mm.330084	NM_001001322	ENSMUSG00000014852	Adamts13	ADAM-TS13|ADAMTS-13|Gm710|vWF-CP	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-59548677-4	chr4	59548606	59548806	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144904, intron 1 of 14)	CpG	658.0	NM_178164	230257.0	Mm.331640	NM_144904	ENSMUSG00000028382	Ptbp3	5830471K22Rik|AA407443|AI462022|AW107884|C86549|Rod1	polypyrimidine tract binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-43689684-4	chr19	43689586	43689786	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053103)	promoter-TSS (NM_053103)	-3.0	NM_053103	93685.0	Mm.248237	NM_053103	ENSMUSG00000025192	Entpd7	1810012B13Rik|1810020C02Rik|2810003F23Rik|LALP1|Lysal2	ectonucleoside triphosphate diphosphohydrolase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-115597325-4	chr8	115597218	115597418	+	989.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	109576.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-25868555-8	chr17	25868418	25868618	+	912.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026633, exon 2 of 5)	exon (NM_026633, exon 2 of 5)	220.0	NM_026633	68241.0	Mm.328870	NM_026633	ENSMUSG00000025732	Mcrip2	9530058B02Rik|Fam195a	MAPK regulated corepressor interacting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-130642885-4	chr2	130642786	130642986	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_197945)	promoter-TSS (NM_197945)	-42.0	NM_001291027	241638.0	Mm.440130	NM_197945	ENSMUSG00000037703	Lzts3	Prosapip1	leucine zipper, putative tumor suppressor family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27969753-3	chr17	27969644	27969844	+	717.666687	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	intron (NM_181413, intron 1 of 24)	intron (NM_181413, intron 1 of 24)	60438.0	NM_181413	224650.0	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-100007975-2	chr12	100007875	100008075	+	699.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164426, intron 2 of 2)	intron (NM_001164426, intron 2 of 2)	43476.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-146500666-4	chr3	146500585	146500785	+	978.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027617)	promoter-TSS (NM_027617)	849.0	NM_010318	14707.0	Mm.140804	NM_010318	ENSMUSG00000068523	Gng5	G(y)5	guanine nucleotide binding protein (G protein), gamma 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-66079620-4	chr7	66079520	66079720	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024439)	promoter-TSS (NM_024439)	-29.0	NM_001348246	109815.0	Mm.482127	NM_024439	ENSMUSG00000075701	Selenos	1500011E07Rik|C78786|H-4|H-47|H4|H47|Sels|Vimp	selenoprotein S	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-60758057-1	chr9	60757957	60758157	+	805.799988	f0_balb.idr	Intergenic	Intergenic	-36385.0	NM_001357408	72565.0	Mm.68819	NM_028283	ENSMUSG00000034485	Uaca	2700059D02Rik|nucling	uveal autoantigen with coiled-coil domains and ankyrin repeats	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127590480-5	chr10	127590412	127590612	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 12 of 88)	intron (NM_008512, intron 12 of 88)	30636.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	1.91231818345982	3.18202603146669	2.7928613922774	2.60456693335593	3.01562163567753	2.51571805538024	3.10133521793346	3.00848274247818	0.446617989047452	0.535131988460286	0.95286627222167
Merged-chr10-81182086-2	chr10	81181999	81182199	+	813.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001190474)	promoter-TSS (NM_001190474)	-908.0	NM_001190474	13144.0	Mm.10294	NM_007828	ENSMUSG00000034974	Dapk3	ZIPK|dlk	death-associated protein kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-37934973-4	chr18	37934856	37935056	+	986.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305981, intron 1 of 28)	CpG	520.0	NM_001305981	13367.0	Mm.195916	NM_007858	ENSMUSG00000024456	Diaph1	D18Wsu154e|Dia1|Diap1|Drf1|p140mDia	diaphanous related formin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-137760256-4	chr5	137760161	137760361	+	858.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_023910)	TTS (NM_023910)	14292.0	NM_029805	78829.0	Mm.286399	NM_023910	ENSMUSG00000029723	Tsc22d4	0610009M14Rik|1700023B23Rik|AI415410|Thg-1pit|Tilz2	TSC22 domain family, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-67396718-4	chr18	67396607	67396807	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026473, intron 3 of 3)	intron (NM_026473, intron 3 of 3)	5976.0	NM_026473	67951.0	Mm.181860	NM_026473	ENSMUSG00000001473	Tubb6	2310057H16Rik|BB220206	tubulin, beta 6 class V	protein-coding	3.68516502282263	4.95424409956423	4.25368684768396	3.73946426584532	4.39323897219115	4.30098646628657	4.84178567813302	3.75918686054092	0.164185755624301	0.723437597804979	0.998431161219273
Merged-chr10-89708965-1	chr10	89708865	89709065	+	787.0	f1_c57bl6.idr	Intergenic	RMER17C|LTR|ERVK	22602.0	NR_130956	69002.0	Mm.293947	NR_130956	ENSMUSG00000097383	1500026H17Rik	-	RIKEN cDNA 1500026H17 gene	ncRNA	2.21385361725357	0.835393890976778	2.93782479144205	0.782117079297772	1.00061803982278	1.14945923405961	2.09022996894207	0.786356551978796	-1.59641295591526	0.229303635523357	0.722661238657097
Merged-chr10-121614163-2	chr10	121614063	121614263	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359618, intron 6 of 24)	intron (NM_001359618, intron 6 of 24)	12169.0	NM_001081056	73192.0	Mm.25042	NM_001081056	ENSMUSG00000034667	Xpot	1110004L07Rik|3110065H13Rik|AI452076|C79645|EXPORTIN-T	exportin, tRNA (nuclear export receptor for tRNAs)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-87075324-2	chr14	87075227	87075427	+	832.099976	f0_balb.idr|f1_balb.idr	intron (NM_019670, intron 3 of 27)	ORR1C1|LTR|ERVL-MaLR	65897.0	NM_019670	56419.0	Mm.440585	NM_019670	ENSMUSG00000022021	Diaph3	4930417P13Rik|Dia2|Diap3|Drf3|p134MDia2	diaphanous related formin 3	protein-coding	2.27178741706319	2.43078939263648	1.37822553479562	2.27795151896775	2.04685300739159	3.28807972132441	2.22439510302654	2.95033571358093	1.21844376809433	0.161211705291443	0.622068409118802
Merged-chr11-75159800-3	chr11	75159774	75159974	+	731.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001002764, exon 18 of 19)	exon (NM_001002764, exon 18 of 19)	8278.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-95476138-3	chr10	95476048	95476248	+	794.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25801.0	NM_001359476	67270.0	Mm.30008	NM_026065	ENSMUSG00000062981	Mrpl42	2700009F22Rik|2900055D03Rik|D10Ertd322e|HSPC204|L31mt|L42mt|MRP-L31|MRP-L42|MRP-S32|PTD007|Rpml31|S32mt	mitochondrial ribosomal protein L42	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-31767370-3	chr5	31767266	31767466	+	993.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144541, intron 3 of 11)	MTD|LTR|ERVL-MaLR	69316.0	NM_144541	107976.0	Mm.482126	NM_144541	ENSMUSG00000052139	Babam2	6030405P19Rik|AI429776|B830038C02Rik|Bre	BRISC and BRCA1 A complex member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-13495270-1	chr9	13495170	13495370	+	552.0	f1_balb.idr	Intergenic	Intergenic	63909.0	NR_028271	18689.0	Mm.41972	NM_008835	ENSMUSG00000031802	Phxr4	Sp5	per-hexamer repeat gene 4	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119928432-4	chr11	119928314	119928514	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_039557, intron 2 of 2)	intron (NR_039557, intron 2 of 2)	14604.0	NM_001085498	208092.0	Mm.306673	NM_001085498	ENSMUSG00000025371	Chmp6	2400004G01Rik	charged multivesicular body protein 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-46734361-2	chr13	46734261	46734461	+	624.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-6512.0	NM_175749	218210.0	Mm.255398	NM_175749	ENSMUSG00000021374	Nup153	B130015D15Rik|C88147	nucleoporin 153	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-38400092-3	chr16	38400005	38400205	+	997.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134102, intron 9 of 10)	intron (NM_134102, intron 9 of 10)	33040.0	NM_134102	85031.0	Mm.279805	NM_134102	ENSMUSG00000002847	Pla1a	AA986889|Ps-pla1|Pspla1	phospholipase A1 member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-82372991-3	chr8	82372912	82373112	+	789.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008357, intron 2 of 7)	intron (NM_008357, intron 2 of 7)	29574.0	NM_001254747	16168.0	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	1.93001189513804	2.55947344191822	0.964673796215398	2.23110130836161	1.32436854214547	1.98477114679097	0.970423386374133	0.947760551579835	-1.85447183746111	0.136484234054511	0.576597831051417
Merged-chr8-25062136-4	chr8	25062041	25062241	+	996.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031257, intron 5 of 11)	intron (NM_031257, intron 5 of 11)	-23179.0	NM_001081187	330723.0	Mm.334452	NM_001081187	ENSMUSG00000037406	Htra4	B430206E18Rik	HtrA serine peptidase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-78135807-2	chr10	78135707	78135907	+	844.8333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER20A|LTR|ERVK	33961.0	NM_138601	28295.0	Mm.268691	NM_138601	ENSMUSG00000053329	D10Jhu81e	C21orf33|ES1	DNA segment, Chr 10, Johns Hopkins University 81 expressed	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-43036067-2	chr10	43035967	43036167	+	847.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_175407, intron 5 of 6)	intron (NM_175407, intron 5 of 6)	-44905.0	NR_153349	327749.0	Mm.428887	NR_153349		Gm5079	C230040G06	predicted gene 5079	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30608074-3	chr7	30607963	30608163	+	621.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026815, intron 3 of 7)	intron (NM_026815, intron 3 of 7)	4671.0	NM_026815	109637.0	Mm.25471	NM_026815	ENSMUSG00000006313	Upk1a	1110031P12Rik|AU019298|C87192|Tspan21|Upk1	uroplakin 1A	protein-coding	0.647844446774606	1.57811816027206	0.680814424876119	0.668632310972396	0.650983869397008	1.5930192819567	1.40346798056884	1.75294925751824	1.67649888632979	0.284598907751943	0.788780724680855
Merged-chr11-114229454-2	chr11	114229354	114229554	+	984.6666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	31196.0	NR_045930	73536.0	Mm.54275	NR_045930	ENSMUSG00000078600	1700092K14Rik	-	RIKEN cDNA 1700092K14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-104422439-4	chr2	104422317	104422517	+	806.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6523.0	NR_035432	100316678.0		NR_035432	ENSMUSG00000084516	Mir1902	Mirn1902|mmu-mir-1902	microRNA 1902	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64297271-4	chr5	64297164	64297364	+	946.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 11 of 18)	L1MB2|LINE|L1	66907.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	0.131258431570758	0.152318402154063	0.145457184659408	0.977346603446414	0.64227757191068	0.153860192368984	0.146973543583905	0.709538598164522	0.111574188513413	0.958011299005682	1
Merged-chr15-99420809-2	chr15	99420709	99420909	+	692.875	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27590.0	NM_001171035	110213.0	Mm.16769	NM_026669	ENSMUSG00000023010	Tmbim6	5031406P05Rik|Bi1|Tegt	transmembrane BAX inhibitor motif containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107611319-1	chr9	107611219	107611419	+	779.0	f1_c57bl6.idr	Intergenic	Intergenic	-2078.0	NM_001291539	20347.0	Mm.4083	NM_009153	ENSMUSG00000057969	Sema3b	SemA|Semaa|sema5|semaV	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B	protein-coding	0.0138456253440526	-0.10924413156196	0.199915046942366	-0.117387412449199	0.245317438842565	0.493360933124331	-0.112831894887831	-0.116769221580117	1.32724188159601	0.547650501715547	1
Merged-chr1-127084102-4	chr1	127083936	127084136	+	932.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-120950.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	4.0214612445875	4.91195466700402	3.7759784438186	4.22695083602355	4.00286942720344	4.74532737799254	2.78418913817825	3.1069114044842	-0.561957883276887	0.306337048139266	0.806865344318695
Merged-chr17-63493320-4	chr17	63493219	63493419	+	911.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015794, intron 1 of 8)	intron (NM_015794, intron 1 of 8)	7261.0	NM_015794	50758.0	Mm.136366	NM_015794	ENSMUSG00000023965	Fbxl17	6330576B01Rik|AI452053|BB073797|C130023C01Rik|Fbx13|Fbxo13	F-box and leucine-rich repeat protein 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-121305652-3	chr10	121305550	121305750	+	914.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361015, intron 4 of 12)	intron (NM_001361015, intron 4 of 12)	5746.0	NM_029057	74694.0	Mm.233833	NM_029057	ENSMUSG00000052302	Tbc1d30	4930505D03Rik|9530013E20Rik	TBC1 domain family, member 30	protein-coding	-2.18308165884198	-2.15547475440471	-2.16382331017202	-2.1706810624505	-2.18114370519566	-2.15366558754311	-2.03057248461154	-2.16945352807143	0.759018020146679	0.829933115115583	1
Merged-chr11-86603923-4	chr11	86603835	86604035	+	980.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356531, intron 9 of 11)	intron (NM_001356531, intron 9 of 11)	-19777.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-24336601-3	chr19	24336491	24336691	+	961.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008846, intron 13 of 14)	intron (NM_008846, intron 13 of 14)	-56005.0	NM_008044	14297.0	Mm.7319	NM_008044	ENSMUSG00000059363	Fxn	FA|FARR|Frda|X25	frataxin	protein-coding	0.812012927101603	0.850423222602905	0.538599431416089	0.521413268286916	0.618789883899792	0.859934606717418	0.369488807114707	0.363925955377626	-0.745652508347312	0.657104402594869	1
Merged-chr9-105483069-2	chr9	105482988	105483188	+	722.799988	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253831, intron 1 of 26)	B3|SINE|B2	12045.0	NM_175025	235574.0	Mm.326247	NM_175025	ENSMUSG00000032570	Atp2c1	1700121J11Rik|ATP2C1A|AW061228|BCPM|D930003G21Rik|HHD|SPCA|pmr1	ATPase, Ca++-sequestering	protein-coding	0.564039367116845	0.89071103953975	0.228913487977298	0.225063116570873	0.219666341812132	0.901129790764222	0.230018930740372	0.225733903276946	-0.472019719875938	0.822191547085239	1
Merged-chr11-83663200-1	chr11	83663100	83663300	+	564.0	f0_balb.idr	intron (NM_013652, intron 1 of 2)	B2_Mm2|SINE|B2	616.0	NM_013652	20303.0	Mm.244263	NM_013652	ENSMUSG00000018930	Ccl4	AT744.1|Act-2|MIP-1B|Mip1b|Scya4	chemokine (C-C motif) ligand 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-124230074-4	chr8	124229996	124230196	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1298.0	NM_139272	108148.0	Mm.33808	NM_139272	ENSMUSG00000089704	Galnt2	AI480629	polypeptide N-acetylgalactosaminyltransferase 2	protein-coding	6.77222285794999	6.28091896684534	7.00228838818108	6.85060102982071	6.44443531251392	6.60437169247725	6.29967538870196	6.19855562446354	-0.387650756836794	0.0635025978726579	0.375541696046961
Merged-chr2-130707280-2	chr2	130707180	130707380	+	544.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001311147, exon 37 of 37)	3' UTR (NM_001311147, exon 37 of 37)	-9761.0	NM_001081162	269356.0	Mm.441391	NM_001081162	ENSMUSG00000074796	Slc4a11	AI503023|BTR1|NaBC1	solute carrier family 4, sodium bicarbonate transporter-like, member 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44262343-2	chr7	44262243	44262443	+	571.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_152170)	TTS (NR_152170)	865.0	NR_152170	628854.0	Mm.451981	NR_152170		Gm15517	-	predicted gene 15517	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-83810428-2	chr7	83810328	83810528	+	631.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15589.0	NM_029335	75556.0	Mm.17649	NM_029335	ENSMUSG00000011154	Cfap161	1700026D08Rik|AW047638|AW551802	cilia and flagella associated protein 161	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-8830643-3	chr16	8830544	8830744	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081400, exon 1 of 4)	exon (NM_001081400, exon 1 of 4)	544.0	NM_001081400	69053.0	Mm.390868	NM_001081400	ENSMUSG00000022507	1810013L24Rik	1110017P05Rik|3010002C02Rik|AA792997|AW124177|Gm19906|R74903	RIKEN cDNA 1810013L24 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-73121367-2	chr14	73121267	73121467	+	654.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER20|DNA|hAT-Charlie	-21143.0	NM_001170694	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-81750861-2	chr12	81750761	81750961	+	556.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001174107, intron 2 of 10)	ORR1E|LTR|ERVL-MaLR	30309.0	NM_177395	338372.0	Mm.35284	NM_177395	ENSMUSG00000042724	Map3k9	E130314H24Rik|Mlk1|Prke1	mitogen-activated protein kinase kinase kinase 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-35338396-4	chr12	35338288	35338488	+	947.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-143491.0	NR_030449	751520.0		NR_030449	ENSMUSG00000076253	Mir680-3	Mirn680-3	microRNA 680-3	ncRNA	1.42208086177727	1.20165535333112	0.641406256742932	0.632617537277169	0.788466252406591	1.21258276100068	0.643904142673174	1.52992865388869	0.291727472249908	0.851624052085855	0.998431161219273
Merged-chr5-25099731-3	chr5	25099602	25099802	+	870.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145401, intron 1 of 15)	CpG	940.0	NM_145401	108099.0	Mm.33649	NM_145401	ENSMUSG00000028944	Prkag2	2410051C13Rik|AAKG|AAKG2|AI854673|H91620p|WPWS	protein kinase, AMP-activated, gamma 2 non-catalytic subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-103901689-1	chr2	103901589	103901789	+	567.0	f0_balb.idr	intron (NR_131913, intron 1 of 6)	intron (NR_131913, intron 1 of 6)	738.0	NR_131913	100996933.0	Mm.394449	NR_131913		Lincred1	-	long intergenic non-protein coding RNA of erythroid differentiation 1	ncRNA	0.401198843788115	0.398231993038585	0.232893882599051	0.0716464924171312	0.4090670717739	0.256885759663636	0.237215272988442	0.0722432247411761	-0.274788459253289	0.883758500870279	1
Merged-chr19-4162642-2	chr19	4162542	4162742	+	631.833374	f1_balb.idr|f1_c57bl6.idr	exon (NM_021485, exon 3 of 15)	exon (NM_021485, exon 3 of 15)	741.0	NR_153661	58988.0	Mm.271937	NM_021485	ENSMUSG00000024830	Rps6kb2	S6K-beta-2|S6K2	ribosomal protein S6 kinase, polypeptide 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-85046624-2	chr2	85046525	85046725	+	748.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_182990, intron 16 of 16)	intron (NM_182990, intron 16 of 16)	-3835.0	NM_001081260	228140.0	Mm.23606	NM_001081260	ENSMUSG00000033955	Tnks1bp1	Tab182|mKIAA1741	tankyrase 1 binding protein 1	protein-coding	0.0293480590100312	-0.338348425877069	-0.342795892007062	-0.178605412088039	-0.351082198936202	0.40472521169243	-0.341814789498468	-0.345628919695306	0.814398936376379	0.741632293336472	1
Merged-chr10-81580601-1	chr10	81580501	81580701	+	542.0	f1_balb.idr	exon (NM_001252401, exon 7 of 20)	exon (NM_001252401, exon 7 of 20)	5314.0	NM_001252401	21886.0	Mm.38608	NM_019725	ENSMUSG00000034771	Tle2	Grg2|mKIAA4188	transducin-like enhancer of split 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-73116960-3	chr9	73116836	73117036	+	873.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198609, intron 3 of 5)	(T)n|Simple_repeat|Simple_repeat	3467.0	NM_198609	225215.0	Mm.379366	NM_198609	ENSMUSG00000032215	Rsl24d1	2410159K22Rik	ribosomal L24 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-84679700-3	chr18	84679592	84679792	+	702.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023149, intron 3 of 11)	intron (NM_023149, intron 3 of 11)	2367.0	NM_001289531	66054.0	Mm.29646	NM_023149	ENSMUSG00000024644	Cndp2	0610010E05Rik|C76600|Cn2|Dip-2|Pep-1|Pep1	CNDP dipeptidase 2 (metallopeptidase M20 family)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-20835412-4	chr10	20835307	20835507	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	-110329.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-126945055-3	chr3	126944952	126945152	+	993.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001327939, exon 37 of 46)	exon (NM_001327939, exon 37 of 46)	-1666.0	NM_001034168	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	4.94620694731422	3.88726352005408	3.89000586310985	4.55598278785156	2.49628591243669	2.86446862746799	1.92796116699834	2.30639040267845	-3.02075320191524	5.9754983541181e-07	4.23389936531746e-05
Merged-chr9-40807811-4	chr9	40807730	40807930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6557.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	1.4503556219233	1.51232322245254	1.05547267211818	0.77122952580272	1.16441637286262	1.52605937624131	2.77139297518642	0.774635913369242	1.6663063563109	0.19246351248339	0.670882400574001
Merged-chr11-100402083-2	chr11	100401983	100402183	+	942.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_132425, intron 2 of 3)	intron (NR_132425, intron 2 of 3)	3967.0	NR_132425	102635937.0	Mm.421398	NR_132425		Gm12348	-	predicted gene 12348	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-15936016-2	chr5	15935916	15936116	+	719.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110843, intron 1 of 38)	intron (NM_001110843, intron 1 of 38)	1325.0	NM_001110844	12293.0	Mm.159842	NM_009784	ENSMUSG00000040118	Cacna2d1	Ca(v)alpha2delta1|Cacna2|Cchl2a	calcium channel, voltage-dependent, alpha2/delta subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96069841-2	chr3	96069743	96069943	+	756.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13D6|LTR|ERVK	-11388.0	NM_013841	22365.0	Mm.263185	NM_013841	ENSMUSG00000015747	Vps45	AI462172|AW554165|mVps45	vacuolar protein sorting 45	protein-coding	1.19017229613361	1.06443366371934	2.23435369940359	1.80581353747206	1.82199731010673	1.67418921564563	1.27406840639162	1.81559686651564	-0.0393380398714512	0.972917705104844	0.998431161219273
Merged-chr15-101224164-4	chr15	101224080	101224280	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019518)	promoter-TSS (NM_019518)	-27.0	NM_019518	56149.0	Mm.276573	NM_019518	ENSMUSG00000000531	Grasp	tamalin	GRP1 (general receptor for phosphoinositides 1)-associated scaffold protein	protein-coding	5.12084725705216	5.80709587407751	5.34043427606729	5.27069006310692	5.15754964380216	5.81666744859205	5.37645928190303	5.29407753506	0.028466262904334	0.923040557857829	0.998431161219273
Merged-chr5-139179081-2	chr5	139178981	139179181	+	570.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081265, intron 10 of 12)	intron (NM_001081265, intron 10 of 12)	-21556.0	NM_001256115	77053.0	Mm.210845	NM_024451	ENSMUSG00000036817	Sun1	4632417G13Rik|5730434D03Rik|Unc84a|mKIAA0810	Sad1 and UNC84 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-126952789-1	chr3	126952689	126952889	+	677.0	f1_c57bl6.idr	intron (NM_178655, intron 14 of 24)	intron (NM_178655, intron 14 of 24)	-9403.0	NM_001034168	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	1.39050173661113	0.636729450266559	1.45430709802755	0.800742648279315	1.03237556126945	0.639099647062985	1.26080362749931	0.619366988927055	-0.917784780854349	0.557395046168685	0.960321604678676
Merged-chr8-120561530-2	chr8	120561430	120561630	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145896, intron 2 of 15)	intron (NM_001145896, intron 2 of 15)	22834.0	NR_106159	102466849.0		NR_106159	ENSMUSG00000098280	Mir7687	Gm27573|mmu-mir-7687	microRNA 7687	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100208027-4	chr7	100207900	100208100	+	875.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19607.0	NM_027629	70974.0	Mm.440524	NM_027629	ENSMUSG00000030729	Pgm2l1	4931406N15Rik|AI553438|BM32A	phosphoglucomutase 2-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-94178934-4	chr2	94178835	94179035	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21026.0	NM_019657	56348.0	Mm.22505	NM_019657	ENSMUSG00000027195	Hsd17b12	2610510O05Rik|AI172963|KIK-I|Kik1	hydroxysteroid (17-beta) dehydrogenase 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-38182705-4	chr7	38182588	38182788	+	991.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001085385)	promoter-TSS (NM_001085385)	-529.0	NM_001085385	72244.0	Mm.187554	NM_028166		1600014C10Rik	AI428873	RIKEN cDNA 1600014C10 gene	protein-coding	4.90923138479328	5.18774291556759	3.56863777208295	5.6687004726855	4.91488955486592	4.4686916217357	4.44310291136568	4.70044739218476	-0.455170927213363	0.283496263744772	0.786737607402665
Merged-chr13-43496811-4	chr13	43496729	43496929	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15856.0	NM_019930	56705.0	Mm.148781	NM_019930	ENSMUSG00000038546	Ranbp9	IBAP-1|Ibap1|RanBPM	RAN binding protein 9	protein-coding	3.08125961635069	3.28180411051102	3.40897918440717	2.25107132723662	3.03172142479389	2.42025765776067	2.50458859929544	3.63985122407688	-0.116693289951167	0.867225168821806	0.998431161219273
Merged-chr19-46042447-2	chr19	46042347	46042547	+	982.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113408, intron 1 of 10)	intron (NM_001113408, intron 1 of 10)	-2826.0	NM_010697	16825.0	Mm.327442	NM_010697	ENSMUSG00000025223	Ldb1	CLIM2|NLI	LIM domain binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-64496870-4	chr11	64496762	64496962	+	868.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178870, intron 1 of 1)	intron (NM_178870, intron 1 of 1)	-60188.0	NR_028445	654805.0	Mm.436132	NR_028445		F930015N05Rik	-	RIKEN cDNA F930015N05 gene	ncRNA	5.14645931127051	4.63064670156582	4.82160976674619	4.58707111965272	3.81347324369671	3.8061277996483	2.63123271607377	3.46156258820666	-1.73290505631382	0.000101407235572759	0.00310856358965891
Merged-chr7-111370753-4	chr7	111370627	111370827	+	949.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-248052.0	NR_015573	75479.0	Mm.381620	NR_015573	ENSMUSG00000110424	1700012D14Rik	-	RIKEN cDNA 1700012D14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-83039779-2	chr2	83039679	83039879	+	573.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus4|LINE|L1	-604799.0	NM_026934	69082.0	Mm.27804	NM_026934	ENSMUSG00000027091	Zc3h15	1700006A17Rik|1810012H02Rik|2610312B22Rik|FM22|Ierepo4	zinc finger CCCH-type containing 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-111805358-4	chr13	111805254	111805454	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011945, intron 1 of 19)	(TC)n|Simple_repeat|Simple_repeat	3639.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-32087879-2	chr19	32087787	32087987	+	734.333374	f0_balb.idr|f1_balb.idr	intron (NM_018830, intron 2 of 23)	L1_Mur3|LINE|L1	15253.0	NM_018830	54447.0	Mm.491229	NM_018830	ENSMUSG00000024887	Asah2	AI585898	N-acylsphingosine amidohydrolase 2	protein-coding	1.78416301282361	3.49956130968041	1.42372908314051	1.35661442154641	3.09865493600806	4.36596877976855	5.57414018844837	3.87861589194227	3.18637211483446	0.0250542911729427	0.209526988029484
Merged-chr10-68264082-4	chr10	68263982	68264182	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023598, intron 2 of 9)	intron (NM_023598, intron 2 of 9)	14644.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	1.13449345206353	2.0787936654055	2.00795185624876	2.05598983912083	1.63534631026909	1.82086584876964	2.13344579745908	1.71171024649609	-0.112832559322179	0.914369207726163	0.998431161219273
Merged-chr10-22731864-2	chr10	22731764	22731964	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011603)	promoter-TSS (NM_011603)	-417.0	NM_011603	237336.0	Mm.86670	NM_011603	ENSMUSG00000071359	Tbpl1	4732475G08|AW011832|AW491032|D18347|STD|TLF|TRF2|TRP|Tlp	TATA box binding protein-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-64356772-4	chr7	64356677	64356877	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177893, intron 8 of 13)	intron (NM_177893, intron 8 of 13)	17318.0	NM_177893	330554.0	Mm.236510	NM_177893	ENSMUSG00000033458	Fan1	6030441H18Rik|Mtmr15|mFAN1	FANCD2/FANCI-associated nuclease 1	protein-coding	3.59736151357311	2.60258786023618	3.65604578112696	3.03328529921839	3.57519644869533	2.24112754965795	2.16192071474345	3.44740812708269	-0.428651163069558	0.541821726617259	0.954866069207078
Merged-chr1-45880688-2	chr1	45880588	45880788	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	44906.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-8735043-3	chr3	8734930	8735130	+	571.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-67992.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-77826368-4	chr1	77826277	77826477	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-311289.0	NM_007936	13838.0	Mm.400747	NM_007936	ENSMUSG00000026235	Epha4	2900005C20Rik|AI385584|Cek8|Hek8|Sek|Sek1|Tyro1|rb	Eph receptor A4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-68048529-1	chr14	68048429	68048629	+	759.0	f0_balb.idr	Intergenic	Intergenic	-35334.0	NM_010910	18039.0	Mm.1956	NM_010910	ENSMUSG00000022055	Nefl	AI847934|CMT2E|NF-L|NF68|Nfl	neurofilament, light polypeptide	protein-coding	0.673132604062075	1.57672547043318	0.500100706976349	0.487218934067844	1.13439709583501	0.519913334339898	2.02808470951787	0.489493411976032	1.07161876705773	0.511550441700718	0.94512318675548
Merged-chr5-43230154-2	chr5	43230054	43230254	+	601.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_028417, intron 1 of 7)	L2|LINE|L2	-3309.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-30825630-4	chr14	30825512	30825712	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028839)	promoter-TSS (NM_028839)	18.0	NM_028839	69179.0	Mm.143025	NM_028839	ENSMUSG00000006526	Tmem110	1810038N08Rik|2310014H19Rik|AW554125|STIMATE	transmembrane protein 110	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-59586595-2	chr12	59586495	59586695	+	636.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-367112.0	NM_001033156	70611.0	Mm.311026	NM_001033156	ENSMUSG00000035329	Fbxo33	5730501N20Rik|AI642135	F-box protein 33	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-85684224-1	chr15	85684124	85684324	+	584.0	f1_balb.idr	Intergenic	Intergenic	-19549.0	NR_110483	102800312.0	Mm.33117	NR_110483		Lncppara	Lincppara|Mirlet7bhg|linc-Ppara	long noncoding RNA near Ppara	ncRNA	-1.27480050717774	-0.604729833679879	-1.25573295904267	-1.26493563944758	-1.27428069156472	-1.24210192204986	-1.25319678955844	-1.26328836405502	-2.6632876257018	0.439827081912762	1
Merged-chr15-34357919-1	chr15	34357819	34358019	+	901.0	f0_balb.idr	promoter-TSS (NM_001256161)	promoter-TSS (NM_001256161)	-47.0	NM_001256161	77358.0	Mm.402759	NM_001256161	ENSMUSG00000094447	9430069I07Rik	-	RIKEN cDNA 9430069I07 gene	protein-coding	-1.58994551673671	-1.55912852307891	-1.56844783632235	-1.57610299769523	-1.18549093183599	-1.55710898902261	-1.56633814807757	-1.57473272746952	1.78703309985663	0.610309988231842	1
Merged-chr12-71981446-4	chr12	71981351	71981551	+	888.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026102, intron 22 of 25)	intron (NM_026102, intron 22 of 25)	89540.0	NM_181752	238252.0	Mm.390508	NM_181752	ENSMUSG00000043398	Gpr135	PAFR	G protein-coupled receptor 135	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-18042261-2	chr14	18042161	18042361	+	597.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR17|LTR|ERVK	60617.0	NM_009380	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5608790-2	chr17	5608690	5608890	+	766.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	116190.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44850410-4	chr7	44850321	44850521	+	997.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_030488)	TTS (NR_030488)	414.0	NM_001253920	67605.0	Mm.148007	NM_026270	ENSMUSG00000011096	Akt1s1	1110012J22Rik|AI227026|Lobe|Lobel|PRAS40	AKT1 substrate 1 (proline-rich)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-49342861-1	chr13	49342761	49342961	+	543.0	f1_c57bl6.idr	intron (NM_001039179, intron 1 of 6)	MIRb|SINE|MIR	1312.0	NM_001039180	76895.0	Mm.197387	NM_029791	ENSMUSG00000037933	Bicd2	-	BICD cargo adaptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120523975-2	chr11	120523875	120524075	+	591.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-6752.0	NM_008101	14527.0	Mm.22329	NM_008101	ENSMUSG00000025127	Gcgr	GR	glucagon receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120625417-2	chr11	120625317	120625517	+	830.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_105901)	promoter-TSS (NR_105901)	-415.0	NM_153056	209011.0	Mm.292957	NM_153056	ENSMUSG00000025138	Sirt7	-	sirtuin 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-148490008-2	chr2	148489908	148490108	+	579.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46473.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-80213925-2	chr12	80213825	80214025	+	750.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134156, intron 1 of 20)	intron (NM_134156, intron 1 of 20)	46446.0	NM_134156	109711.0	Mm.253564	NM_134156	ENSMUSG00000015143	Actn1	3110023F10Rik|Actn1a	actinin, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-97110824-2	chr5	97110724	97110924	+	724.200012	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359913, intron 1 of 2)	L2c|LINE|L2	772.0	NM_001359910	231474.0	Mm.332505	NM_198422	ENSMUSG00000055725	Paqr3	6330415A20Rik|AY424292|RKTG	progestin and adipoQ receptor family member III	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-68908814-3	chr8	68908660	68908860	+	750.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28205.0	NM_008509	16956.0	Mm.1514	NM_008509	ENSMUSG00000015568	Lpl	-	lipoprotein lipase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-87302384-5	chr17	87302250	87302450	+	991.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028639, intron 3 of 19)	intron (NM_028639, intron 3 of 19)	19464.0	NM_028639	225049.0	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5406590-1	chr19	5406490	5406690	+	1000.0	f0_c57.idr	promoter-TSS (NR_015545)	promoter-TSS (NR_015545)	-225.0	NR_015545	74931.0	Mm.388511	NR_015545	ENSMUSG00000086938	4930481A15Rik	-	RIKEN cDNA 4930481A15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-106332930-3	chr9	106332831	106333031	+	970.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027354, intron 10 of 10)	intron (NM_027354, intron 10 of 10)	-35701.0	NM_153459	235584.0	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	4.03084377252224	2.81110751981619	3.99729167302084	3.93195611532313	1.11295544692368	1.31932590949149	1.257814617815	1.77705997960317	-5.4231004395229	1.82986758457911e-06	0.00010797418662187
Merged-chr10-96188969-2	chr10	96188869	96189069	+	910.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37238.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-58271870-2	chr15	58271770	58271970	+	579.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52299.0	NM_177755	268807.0	Mm.124498	NM_177755	ENSMUSG00000022357	Klhl38	8230402K04Rik	kelch-like 38	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-87622022-4	chr1	87621901	87622101	+	986.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110192, intron 1 of 26)	intron (NM_001110192, intron 1 of 26)	1689.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-18372884-2	chr2	18372772	18372972	+	886.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001190817, intron 1 of 12)	intron (NM_001190817, intron 1 of 12)	19958.0	NM_001190817	13418.0	Mm.246674	NM_007869	ENSMUSG00000026740	Dnajc1	4733401K02Rik|AA960110|D230036H06Rik|Dnajl1|ERdj1|ERj1p|MTJ1	DnaJ heat shock protein family (Hsp40) member C1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35090167-3	chr17	35090062	35090262	+	987.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178592, intron 1 of 19)	intron (NM_178592, intron 1 of 19)	871.0	NM_178592	193742.0	Mm.43745	NM_178592	ENSMUSG00000007036	Abhd16a	AI326074|Bat-5|Bat5|D17H6S82E|NG26	abhydrolase domain containing 16A	protein-coding	1.6338393063617	2.7476357115541	3.37244309838154	3.06161717263707	1.6482769065154	2.76870072522375	3.39824034970037	3.07749599107501	0.0366787051730523	0.964375405957314	0.998431161219273
Merged-chr12-69190684-2	chr12	69190584	69190784	+	898.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027269, intron 2 of 2)	B2_Mm2|SINE|B2	6526.0	NM_146035	217664.0	Mm.206642	NM_146035	ENSMUSG00000043998	Mgat2	AA407964|CDGS2|GLCNACTII|GNT-II|GNT2	mannoside acetylglucosaminyltransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126901908-3	chr8	126901809	126902009	+	820.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44012.0	NM_024214	67952.0	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-87542811-4	chr6	87542708	87542908	+	945.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9549.0	NM_001286610	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-125567294-1	chr7	125567194	125567394	+	837.0	f1_balb.idr	exon (NM_001008700, exon 4 of 11)	exon (NM_001008700, exon 4 of 11)	15012.0	NM_001008700	16190.0	Mm.233802	NM_010557	ENSMUSG00000030748	Il4ra	CD124|Il4r	interleukin 4 receptor, alpha	protein-coding	1.50301821136032	1.51793339690904	1.05502910770851	2.34414390739941	2.02388566979085	1.07976026232722	1.90571009634406	1.72491704795635	0.0657808757920404	0.95566817820654	0.998431161219273
Merged-chr3-30992339-4	chr3	30992247	30992447	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3424.0	NM_008857	18759.0	Mm.291554	NM_008857	ENSMUSG00000037643	Prkci	2310021H13Rik|AI427505|PKClambda|Pkci|Pkcl|Prkcl|aPKClambda|mKIAA4165	protein kinase C, iota	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-39418102-4	chr6	39418005	39418205	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018810, intron 1 of 7)	intron (NM_018810, intron 1 of 7)	1671.0	NM_001311109	54484.0	Mm.270484	NM_018810	ENSMUSG00000029922	Mkrn1	RFP	makorin, ring finger protein, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-121378457-4	chr14	121378362	121378562	+	974.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145465, intron 1 of 10)	CpG	768.0	NM_145465	223255.0	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	1.84704302867932	2.42192827326169	2.60440272755199	2.53088743849243	3.0696064645747	2.27352935628422	3.316820226196	2.84608269374554	1.11346822979779	0.139682709490459	0.583801403065239
Merged-chr18-46564866-3	chr18	46564760	46564960	+	856.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173394, intron 2 of 2)	intron (NM_173394, intron 2 of 2)	9673.0	NM_173394	225471.0	Mm.149280	NM_173394	ENSMUSG00000056130	Ticam2	B430113A10|TICAM-2|TRAM|Tirp|Trif	toll-like receptor adaptor molecule 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-25628746-7	chr2	25628583	25628783	+	980.5714109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007995)	promoter-TSS (NM_007995)	-709.0	NM_007995	14133.0	Mm.10510	NM_007995	ENSMUSG00000026938	Fcna	Fcn1	ficolin A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-45683918-1	chr14	45683818	45684018	+	652.0	f1_c57bl6.idr	Intergenic	Intergenic	-25775.0	NM_001042719	114874.0	Mm.121918	NM_176845	ENSMUSG00000037697	Ddhd1	Mir5131|PA-PLA1	DDHD domain containing 1	protein-coding	-0.412993917622901	-0.401842764860794	-0.40551204220591	-0.00302961106141819	-0.15409079424924	0.0782498203136882	-0.404704087278964	-0.407840352119421	0.8716256525172	0.733885289174679	1
Merged-chr8-114133581-4	chr8	114133487	114133687	+	961.2708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290182)	promoter-TSS (NM_001290182)	13.0	NM_024437	67528.0	Mm.27889	NM_024437	ENSMUSG00000031767	Nudt7	1300007B24Rik|2210404C19Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 7	protein-coding	5.29485530647349	5.93788417586831	5.33930063180146	5.38022130245619	4.98112837560793	5.70444479987049	4.25344886299604	4.42580164750569	-0.643725572330696	0.0732141962287804	0.408949686384035
Merged-chr8-120433816-2	chr8	120433716	120433916	+	701.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-55050.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-30954149-2	chr14	30954049	30954249	+	738.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001308328, intron 2 of 13)	intron (NM_001308328, intron 2 of 13)	2772.0	NM_011849	23955.0	Mm.251494	NM_011849	ENSMUSG00000021918	Nek4	Stk2	NIMA (never in mitosis gene a)-related expressed kinase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-3200866-2	chr6	3200766	3200966	+	587.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	SSU-rRNA_Hsa|rRNA|rRNA	-87653.0	NR_036696	667335.0	Mm.380219	NR_036696	ENSMUSG00000106779	Gm8579	EG667335	spermatogenesis associated glutamate (E)-rich protein 4a pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-183633799-2	chr1	183633603	183633803	+	892.333374	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	-115274.0	NR_151520	102637191.0	Mm.417076	NR_151520	ENSMUSG00000103305	Gm34068	-	predicted gene, 34068	ncRNA	3.0820197958041	3.45102195933569	1.65602056064215	2.64975184862118	2.07002290175545	1.43327590441184	2.40072611088476	2.66398127341429	-1.27659285296487	0.146704367508677	0.596798938077231
Merged-chr10-62183242-4	chr10	62183121	62183321	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11006.0	NR_106122	102465767.0		NR_106122	ENSMUSG00000099185	Mir7662	Gm27876|mmu-mir-7662	microRNA 7662	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72104956-2	chr6	72104856	72105056	+	602.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011375, intron 1 of 6)	B4A|SINE|B4	7348.0	NM_011375	20454.0	Mm.38248	NM_011375	ENSMUSG00000056091	St3gal5	3S-T|Siat9|[a]2	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99876469-2	chr15	99876369	99876569	+	830.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1013.0	NM_001113545	65970.0	Mm.33207	NM_023063	ENSMUSG00000023022	Lima1	Eplin	LIM domain and actin binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28322494-2	chr7	28322394	28322594	+	644.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_013676, exon 14 of 30)	exon (NM_013676, exon 14 of 30)	-10448.0	NM_025616	66525.0	Mm.167913	NM_025616	ENSMUSG00000003438	Timm50	2810403L02Rik|AU015082|TIM50L	translocase of inner mitochondrial membrane 50	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-100642863-3	chr9	100642766	100642966	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357264)	promoter-TSS (NM_001357264)	-582.0	NM_009282	20842.0	Mm.42135	NM_009282	ENSMUSG00000037286	Stag1	AU045003|SA-1|Scc3	stromal antigen 1	protein-coding	3.4212694000826	4.08127093494088	4.54705762609055	3.69255224060857	3.86012613718628	4.76161643313527	3.47181420105855	4.40854626712444	0.287150413578444	0.559882422941619	0.960321604678676
Merged-chr5-30888528-4	chr5	30888435	30888635	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001294262)	promoter-TSS (NM_001294262)	-317.0	NM_174849	231093.0	Mm.440364	NM_174849	ENSMUSG00000029165	Agbl5	9430057O19Rik|CCP5	ATP/GTP binding protein-like 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-72780855-2	chr9	72780755	72780955	+	553.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26419.0	NM_175485	235472.0	Mm.31696	NM_175485	ENSMUSG00000036030	Prtg	A230098A12Rik|Igdcc5	protogenin	protein-coding	-1.06997269762433	-1.30473905204845	-1.3145270772132	-1.32256725251374	-1.06385251204029	-1.30261794616352	-1.3123112828633	-1.32112806497905	0.0394047164033882	0.991001358494878	1
Merged-chr9-62196964-2	chr9	62196864	62197064	+	665.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47136.0	NR_040769	330958.0	Mm.411888	NR_040769	ENSMUSG00000111232	A730043L09Rik	A730043L09	RIKEN cDNA A730043L09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-95845188-4	chr13	95845162	95845362	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027711, intron 1 of 35)	PB1D10|SINE|Alu	46660.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	3.82512353625512	3.58054495664478	4.12172953482648	2.88933548720434	3.48917207754284	3.11149141547956	3.11644943673656	1.61743337336994	-1.05880692839191	0.115716337802242	0.532893278256638
Merged-chr12-80337427-2	chr12	80337327	80337527	+	629.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177267, exon 9 of 9)	3' UTR (NM_177267, exon 9 of 9)	54250.0	NR_037207	100526530.0		NR_037207	ENSMUSG00000105972	Mir1843a	Mir1843|mir-1843a|mmu-mir-1843|mmu-mir-1843a	microRNA 1843a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-192536647-4	chr1	192536553	192536753	+	916.366699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144881, intron 11 of 11)	intron (NM_144881, intron 11 of 11)	234566.0	NM_144881	226861.0	Mm.145857	NM_144881	ENSMUSG00000037375	Hhat	2810432O22Rik|AI462858|AP-2CRE|Skn|Tg(TFAP2A-cre)1Will	hedgehog acyltransferase	protein-coding	2.76803271165317	2.00027237183394	2.54586620455162	2.15531985611102	2.66611769713065	1.33042832628154	2.35830089783268	1.2682877216622	-0.751557072110823	0.455292217151414	0.919253057979521
Merged-chr2-35289191-3	chr2	35289073	35289273	+	957.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001206368, intron 3 of 16)	intron (NM_001206368, intron 3 of 16)	6793.0	NM_146120	227753.0	Mm.443	NM_146120	ENSMUSG00000026879	Gsn	ADF	gelsolin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-151970582-2	chr2	151970482	151970682	+	579.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001289151, exon 2 of 2)	exon (NM_001289151, exon 2 of 2)	2812.0	NM_001289151	73847.0	Mm.272444	NM_028666	ENSMUSG00000027459	Fam110a	1700008J10Rik|5430432M24Rik|AI747080	family with sequence similarity 110, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180808158-2	chr1	180808058	180808258	+	704.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008210, intron 3 of 3)	intron (NM_008210, intron 3 of 3)	5447.0	NM_008210	15078.0	Mm.138832	NM_008210	ENSMUSG00000060743	H3f3a	EyeLinc14|H3.3A	H3 histone, family 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-136692689-1	chr6	136692589	136692789	+	760.0	f0_balb.idr	Intergenic	Intergenic	-30796.0	NM_025806	66857.0	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	1.15534478465211	1.76860848787973	1.23034523571257	2.34238445980427	2.02020818419354	2.62703907394754	2.71295207987324	2.70327862734547	1.97407992073548	0.0494232088188428	0.323796683331894
Merged-chr14-118768167-4	chr14	118768075	118768275	+	987.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19696.0	NM_001160098	58187.0	Mm.390755	NM_021386	ENSMUSG00000022132	Cldn10	6720456I16Rik|Cldn10a|Cldn10b|D14Ertd728e	claudin 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167754073-4	chr2	167753969	167754169	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	62892.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-70777235-1	chr16	70777135	70777335	+	617.0	f1_balb.idr	Intergenic	Intergenic	160810.0	NR_040474	52645.0	Mm.188475	NR_040474		D16Ertd519e	-	DNA segment, Chr 16, ERATO Doi 519, expressed	ncRNA	0.666992584548687	0.947110254429082	0.514358049882406	0.872940779069675	0.672886552847464	1.76539310856785	1.06732272343112	0.50660342430738	1.56520610125241	0.304806109363707	0.806230636782956
Merged-chr7-44960257-2	chr7	44960171	44960371	+	883.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357670, intron 16 of 18)	intron (NM_001357670, intron 16 of 18)	14580.0	NM_001357670	78070.0	Mm.231465	NM_153679	ENSMUSG00000007783	Cpt1c	6530437J22Rik|9630004I06Rik|CPT I-C|CPT IC|CPT1-B|CPTI-B	carnitine palmitoyltransferase 1c	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-105893360-2	chr14	105893260	105893460	+	730.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_011897, exon 2 of 2)	exon (NM_011897, exon 2 of 2)	3459.0	NM_011897	24064.0	Mm.89982	NM_011897	ENSMUSG00000022114	Spry2	sprouty2	sprouty RTK signaling antagonist 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-95566519-4	chr9	95566415	95566615	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6698.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-11524027-4	chr2	11523932	11524132	+	931.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177758, intron 1 of 14)	intron (NM_001177758, intron 1 of 14)	-21942.0	NM_001177757	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4633897-3	chr16	4633801	4634001	+	616.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030205, intron 14 of 27)	intron (NM_030205, intron 14 of 27)	-6044.0	NM_139307	246154.0	Mm.482140	NM_139307	ENSMUSG00000039646	Vasn	2610528G05Rik|Atia|Slitl2	vasorin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-129573951-2	chr7	129573851	129574051	+	598.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-17912.0	NM_172255	207425.0	Mm.229323	NM_172255	ENSMUSG00000042055	Wdr11	2900055P10Rik|AW489876|Brwd2|mKIAA1351	WD repeat domain 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-53558596-3	chr15	53558491	53558691	+	662.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177225, intron 4 of 4)	intron (NM_177225, intron 4 of 4)	55688.0	NR_039538	100628567.0		NR_039538	ENSMUSG00000104794	Mir28c	mmu-mir-28c	microRNA 28c	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-73697304-3	chr6	73697191	73697391	+	701.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-226270.0	NR_108032	73408.0	Mm.233629	NR_108032	ENSMUSG00000107408	1700065L07Rik	-	RIKEN cDNA 1700065L07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-125122588-4	chr4	125122409	125122609	+	994.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153159, intron 2 of 5)	intron (NM_153159, intron 2 of 5)	5372.0	NM_153159	230738.0	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-3621554-4	chr2	3621447	3621647	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR35B_MM|LTR|ERVL	-91911.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-172412449-4	chr1	172412317	172412517	+	737.116699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35886.0	NM_026234	67556.0	Mm.26612	NM_026234	ENSMUSG00000050229	Pigm	4933437L05Rik|AI644422|AV302080|C920011G20Rik	phosphatidylinositol glycan anchor biosynthesis, class M	protein-coding	0.729916300549448	0.237189626441166	0.42360043790763	0.223271199529816	0.214599469368292	0.453709822662833	1.23663176171536	0.407743037733339	1.30566669396145	0.474646281470627	1
Merged-chr11-117961479-2	chr11	117961379	117961579	+	707.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7887.0	NM_007707	12702.0	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-23251800-2	chr11	23251700	23251900	+	934.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	-4241.0	NM_001035226	103573.0	Mm.217547	NM_134014	ENSMUSG00000020290	Xpo1	AA420417|Crm1|Exp1	exportin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-61056478-4	chr9	61056379	61056579	+	956.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39410.0	NR_040767	330956.0	Mm.207985	NR_040767	ENSMUSG00000111290	Gm5122	A430102L10	predicted gene 5122	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-85455353-3	chr16	85455203	85455403	+	834.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_144853)	TTS (NM_144853)	95070.0	NM_144853	224405.0	Mm.213203	NM_144853	ENSMUSG00000041134	Cyyr1	-	cysteine and tyrosine-rich protein 1	protein-coding	-0.637164521402753	-0.00107041937844576	-0.629648525983824	-0.198839237686859	-0.636466887126851	-0.625159782951639	-0.628840665121009	-0.631980662164451	-3.34733352433029	0.231753354118799	1
Merged-chr6-108835947-2	chr6	108835832	108836032	+	748.25	f0_balb.idr|f0_c57.idr	intron (NM_138677, intron 1 of 11)	RSINE1|SINE|B4	7291.0	NM_138677	192193.0	Mm.21596	NM_138677	ENSMUSG00000030104	Edem1	A130059K23Rik|EDEM|mKIAA0212	ER degradation enhancer, mannosidase alpha-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-6492594-2	chr18	6492410	6492610	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007935, intron 1 of 13)	intron (NM_007935, intron 1 of 13)	-1653.0	NM_001276350	13831.0	Mm.312133	NM_007935	ENSMUSG00000024240	Epc1	2400007E14Rik|5730566F07Rik|A930032N02Rik|mir-1893	enhancer of polycomb homolog 1	protein-coding	0.42510758994958	0.448172482015236	0.440632039179077	0.972424576926284	0.813878637589237	0.647795381517345	0.908817582157462	1.07720140821013	1.61585906565402	0.346742235751889	1
Merged-chr18-77785779-2	chr18	77785679	77785879	+	600.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11B|LTR|ERVK	-8771.0	NM_013831	19201.0	Mm.57174	NM_013831	ENSMUSG00000025429	Pstpip2	MAYP|cmo	proline-serine-threonine phosphatase-interacting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-48863486-3	chr16	48863426	48863626	+	928.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE-int|LTR|ERVL-MaLR	-9082.0	NM_181596	245195.0	Mm.231288	NM_181596	ENSMUSG00000022651	Retnlg	Fizz3|Relmg|Xcp1	resistin like gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-87638394-4	chr1	87638296	87638496	+	985.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110192, intron 2 of 26)	intron (NM_001110192, intron 2 of 26)	18084.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-136621004-2	chr6	136620921	136621121	+	778.333374	f0_balb.idr|f1_balb.idr	intron (NM_025806, intron 6 of 10)	intron (NM_025806, intron 6 of 10)	40872.0	NM_025806	66857.0	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	3.11744057675506	1.8179428904205	3.19134991495374	4.04111818803397	4.103791252176	3.72253496870251	3.75338666555696	4.41309257122331	1.10888103545981	0.0677297335293374	0.390265797169282
Merged-chr10-83376195-2	chr10	83376095	83376295	+	691.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13B1|LTR|ERVK	15974.0	NM_026579	28109.0	Mm.196210	NM_026579	ENSMUSG00000020255	D10Wsu102e	AI747614|C430041I18Rik	DNA segment, Chr 10, Wayne State University 102, expressed	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-108331238-1	chr10	108331138	108331338	+	587.0	f1_balb.idr	promoter-TSS (NM_054056)	promoter-TSS (NM_054056)	-951.0	NM_054056	114774.0	Mm.391419	NM_054056	ENSMUSG00000035873	Pawr	2310001G03Rik|PAR4|Par-4	PRKC, apoptosis, WT1, regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-20509405-4	chr3	20509317	20509517	+	973.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-142240.0	NM_175086	11608.0	Mm.134863	NM_175086	ENSMUSG00000054988	Agtr1b	AT1B|AT2R1B|Agtr-1b|Angtr-1b	angiotensin II receptor, type 1b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-44231310-4	chr13	44231229	44231429	+	860.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14842.0	NR_045088	100503592.0	Mm.184925	NR_045088	ENSMUSG00000113186	A330076C08Rik	-	RIKEN cDNA A330076C08 gene	ncRNA	2.0367350170922	2.1130671917272	3.13886407057321	3.2894604997176	3.7460858145426	1.57005390415422	2.85249033303061	4.00726372229562	0.935335625813289	0.249695528260015	0.74796445108114
Merged-chr9-13536884-4	chr9	13536777	13536977	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-83112.0	NM_001013813	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-140116483-4	chr7	140116385	140116585	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053119)	promoter-TSS (NM_053119)	-62.0	NM_053119	93747.0	Mm.24452	NM_053119	ENSMUSG00000025465	Echs1	C80529	enoyl Coenzyme A hydratase, short chain, 1, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-93901513-3	chr13	93901413	93901613	+	999.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009712, intron 6 of 7)	intron (NM_009712, intron 6 of 7)	110736.0	NR_049198	100885837.0		NR_049198	ENSMUSG00000093480	Mir5624	Gm25075|mir-5624|mmu-mir-5624	microRNA 5624	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-181272948-2	chr2	181272848	181273048	+	611.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198169, intron 2 of 9)	intron (NM_198169, intron 2 of 9)	15018.0	NM_198169	229004.0	Mm.220423	NM_198169	ENSMUSG00000038705	Gmeb2	AI839884	glucocorticoid modulatory element binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-63283470-3	chr4	63283366	63283566	+	824.022217	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025685, intron 22 of 60)	Charlie1b|DNA|hAT-Charlie	26615.0	NR_030477	735262.0		NR_030477	ENSMUSG00000070102	Mir455	Mirn455|mir-455|mmu-mir-455	microRNA 455	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-115695270-4	chr3	115695138	115695338	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19817.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-37346124-2	chr9	37346024	37346224	+	634.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081429, intron 2 of 15)	RMER4B|LTR|ERVK	2268.0	NM_001081429	245902.0	Mm.390150	NM_001081429	ENSMUSG00000034303	Ccdc15	A630039F14Rik|D030074L19	coiled-coil domain containing 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-136489193-4	chr7	136489092	136489292	+	620.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-139777.0	NR_040459	330664.0	Mm.127762	NR_040459	ENSMUSG00000109633	C230079O03Rik	C230079O03	RIKEN cDNA C230079O03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114826871-4	chr11	114826762	114826962	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24670.0	NM_001110337	70355.0	Mm.242413	NM_147217	ENSMUSG00000051043	Gprc5c	1110028I06Rik|3200002M13Rik|Raig3	G protein-coupled receptor, family C, group 5, member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97284007-2	chr6	97283947	97284147	+	661.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-31267.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	3.38637994252785	4.40613650015658	4.36285638396912	3.41025850237724	3.25752464378742	3.97535552647542	3.53889714550814	2.43722018706342	-0.829070428332719	0.148787670551938	0.599984697943811
Merged-chr17-87106849-4	chr17	87106783	87106983	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019654)	promoter-TSS (NM_019654)	-796.0	NM_019654	56468.0	Mm.126885	NM_019654	ENSMUSG00000037104	Socs5	1810018L08Rik|Cish5|mKIAA0671	suppressor of cytokine signaling 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-100497283-1	chr9	100497183	100497383	+	672.0	f0_balb.idr	exon (NM_001324530, exon 2 of 3)	exon (NM_001324530, exon 2 of 3)	9573.0	NM_001324530	17973.0	Mm.181485	NM_010878	ENSMUSG00000032475	Nck1	6330586M15Rik|D230010O13Rik|Nck|Nck-1	non-catalytic region of tyrosine kinase adaptor protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-25662835-3	chr5	25662763	25662963	+	959.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE-int|LTR|ERVL-MaLR	42934.0	NM_020570	57434.0	Mm.143767	NM_020570	ENSMUSG00000028933	Xrcc2	4921524O04Rik|8030409M04Rik|RAD51|RecA	X-ray repair complementing defective repair in Chinese hamster cells 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-88160470-2	chr17	88160370	88160570	+	597.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR41|LTR|ERV1	34958.0	NM_001190356	225058.0	Mm.312053	NM_001190356		Gm4832	EG225058	predicted gene 4832	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-13685836-4	chr8	13685748	13685948	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MD2|LINE|L1	-8261.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	0.662782210374204	1.27957939065215	1.00648725838906	0.375090806175719	0.365028296360291	0.393216412135619	0.38414269532949	0.970868935217602	-1.70761965895974	0.346265618126212	1
Merged-chr10-93484678-4	chr10	93484579	93484779	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008517, exon 19 of 19)	exon (NM_008517, exon 19 of 19)	-4089.0	NM_010401	15109.0	Mm.13000	NM_010401	ENSMUSG00000020017	Hal	Hsd|his|histidase	histidine ammonia lyase	protein-coding	3.48462605187489	2.4111233383574	3.44852390973579	4.33606517669091	4.24577946842705	4.14648647632165	2.88160815227243	4.62483053740849	0.724685118074	0.221091223035623	0.712291408719486
Merged-chr10-67386241-4	chr10	67386166	67386366	+	891.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-100985.0	NM_001036293	641340.0	Mm.136223	NM_001036293	ENSMUSG00000075000	Nrbf2	NRBF-2	nuclear receptor binding factor 2	protein-coding	2.65045466637302	1.77523287805118	2.59902553234846	2.3126630815624	2.67165102365916	2.33696223287534	2.6187594973967	2.32405343766619	0.248241714092024	0.757403169140269	0.998431161219273
Merged-chr13-112365981-4	chr13	112365845	112366045	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168403, intron 9 of 11)	intron (NM_001168403, intron 9 of 11)	77427.0	NM_001168404	77318.0	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	1.68419819826772	1.26680890481571	2.04534174641089	1.37992269705995	1.16055223071387	1.79415280632713	2.23522029115271	0.992074123873528	0.0733695774273546	0.950637015830271	0.998431161219273
Merged-chr4-9676443-4	chr4	9676341	9676541	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7097.0	NM_001290367	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32982141-4	chr2	32982033	32982233	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019488)	promoter-TSS (NM_019488)	-50.0	NR_151460	56017.0	Mm.305754	NM_019488	ENSMUSG00000026791	Slc2a8	D2Ertd44e|GLUT8|GlutX1	solute carrier family 2, (facilitated glucose transporter), member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89200023-4	chr3	89199926	89200126	+	988.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2899.0	NM_001077411	14466.0	Mm.5031	NM_008094	ENSMUSG00000028048	Gba	GBA1|GC|GCase|GLUC|betaGC	glucosidase, beta, acid	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141020619-3	chr7	141020525	141020725	+	880.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR51A_Mm|LTR|ERVK?	-3733.0	NM_001033632	213002.0	Mm.276440	NM_001033632	ENSMUSG00000059108	Ifitm6	A330075D07|Dspa2f|Fgls5|fragilis5	interferon induced transmembrane protein 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-174434285-2	chr2	174434185	174434385	+	882.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_022325, intron 2 of 5)	intron (NM_022325, intron 2 of 5)	4754.0	NM_022325	64138.0	Mm.156919	NM_022325	ENSMUSG00000016256	Ctsz	AI787083|AU019819|CTSX|D2Wsu143e	cathepsin Z	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-31930412-2	chr16	31930312	31930512	+	573.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-3439.0	NM_172822	239827.0	Mm.440388	NM_172822	ENSMUSG00000045625	Pigz	F630022B06Rik	phosphatidylinositol glycan anchor biosynthesis, class Z	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55365658-3	chr19	55365562	55365762	+	821.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360431, intron 3 of 8)	intron (NM_001360431, intron 3 of 8)	49605.0	NM_001293686	53611.0	Mm.258637	NM_016862	ENSMUSG00000024983	Vti1a	1110014F16Rik|1110018K19Rik|4921537J05Rik|MVti1|MVti1a|Vti1|Vti1-rp2	vesicle transport through interaction with t-SNAREs 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-37962023-1	chr13	37961923	37962123	+	637.0	f1_balb.idr	Intergenic	Intergenic	32185.0	NM_025965	107513.0	Mm.426670	NM_025965	ENSMUSG00000021427	Ssr1	2510001K09Rik|6330400D04|AI159733|AI452176|SSR|TRAPA	signal sequence receptor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-29125562-1	chr2	29125462	29125662	+	1000.0	f0_balb.idr	intron (NM_198033, intron 1 of 25)	CpG	570.0	NM_198033	269254.0	Mm.41867	NM_198033	ENSMUSG00000043535	Setx	A130090N03|A930037J23Rik|AOA2|AW060766|Als4|SCAR1|Sen1|mKIAA0625	senataxin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-90079530-4	chr3	90079438	90079638	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001293749)	promoter-TSS (NM_001293749)	17.0	NM_001293749	59069.0	Mm.240839	NM_022314	ENSMUSG00000027940	Tpm3	TM30nm|TMnm|Tm5NM|Tpm-5|Tpm5|Trop-5|gamma-TM|hTM30nm|hTMnm	tropomyosin 3, gamma	protein-coding	6.08335417460875	6.09766166934126	6.88810250324143	6.37986556189502	5.84173899146664	6.17818869792191	6.62899549600233	6.65678633981916	-0.040089260269742	0.87458405079451	0.998431161219273
Merged-chr19-55585500-5	chr19	55585416	55585616	+	819.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360431, intron 8 of 8)	intron (NM_001360431, intron 8 of 8)	116688.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-136345212-2	chr1	136345112	136345312	+	835.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347109, intron 1 of 17)	intron (NM_001347109, intron 1 of 17)	892.0	NM_001347109	67886.0	Mm.144143	NM_001081360	ENSMUSG00000041570	Camsap2	1600013L13Rik|4930541M15Rik|Camsap1l1|mKIAA1078	calmodulin regulated spectrin-associated protein family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-149245134-2	chr5	149245034	149245234	+	627.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	-19870.0	NM_001308462	11690.0	Mm.19844	NM_009663	ENSMUSG00000060063	Alox5ap	Flap	arachidonate 5-lipoxygenase activating protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-7455802-1	chr16	7455702	7455902	+	687.5	f0_balb.idr	Intergenic	Intergenic	385967.0	NM_183188	268859.0	Mm.370334	NM_021477	ENSMUSG00000008658	Rbfox1	A2bp|A2bp1|Hrnbp1|fox-1	RNA binding protein, fox-1 homolog (C. elegans) 1	protein-coding	-0.165231440099177	-0.472764820162294	-0.475436817225904	-0.477475704506866	-0.158115737493418	-0.164026194249946	-0.474850334650164	-0.477120937790043	0.984007049051566	0.71062848591855	1
Merged-chr6-40689383-4	chr6	40689291	40689491	+	893.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001171003, intron 31 of 47)	intron (NM_001171003, intron 31 of 47)	60560.0	NM_001171003	232714.0	Mm.33401	NM_001171003	ENSMUSG00000068587	Mgam	6030407P20Rik|MGA	maltase-glucoamylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34606458-4	chr17	34606338	34606538	+	983.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163379, intron 1 of 6)	intron (NM_001163379, intron 1 of 6)	577.0	NM_001163379	55979.0	Mm.8684	NM_018862	ENSMUSG00000034254	Agpat1	1-AGP|1-AGPAT|AW047140	1-acylglycerol-3-phosphate O-acyltransferase 1 (lysophosphatidic acid acyltransferase, alpha)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83282363-2	chr11	83282263	83282463	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166028, intron 2 of 4)	intron (NM_001166028, intron 2 of 4)	4363.0	NM_001166028	237890.0	Mm.297670	NM_001166028	ENSMUSG00000082101	Slfn14	Gm20|Slfn14-ps	schlafen 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-108206856-3	chr12	108206763	108206963	+	844.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159910, intron 5 of 5)	intron (NM_001159910, intron 5 of 5)	27125.0	NM_009832	12454.0	Mm.474441	NM_009832	ENSMUSG00000021258	Ccnk	AW123198|AW413594|CPR4|CycK	cyclin K	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-52501587-2	chr12	52501487	52501687	+	611.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14490.0	NM_009706	11855.0	Mm.35059	NM_009706	ENSMUSG00000035133	Arhgap5	p190-B|p190B	Rho GTPase activating protein 5	protein-coding	1.80226731550681	1.0864858061542	1.85569811032155	1.6905743841824	1.81757868834665	1.09044979712748	1.8707450511787	1.69922919818125	0.0378847395403877	0.974164140962705	0.998431161219273
Merged-chr11-54054470-2	chr11	54054370	54054570	+	553.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_019417)	TTS (NM_019417)	14547.0	NM_019417	30794.0	Mm.21830	NM_019417	ENSMUSG00000020388	Pdlim4	Ril	PDZ and LIM domain 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-185193721-4	chr1	185193609	185193809	+	982.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10459.0	NM_001163754	98732.0	Mm.275841	NM_172649	ENSMUSG00000039318	Rab3gap2	1110059F07Rik|2010002H18Rik|5830469C09|AI851069|AW743433|RAB3-GAP150|mKIAA0839	RAB3 GTPase activating protein subunit 2	protein-coding	3.84930583506592	4.64688097817775	2.9132481264125	4.25678776702596	3.33252463031424	4.07037088941853	3.43316562662122	4.611577281258	-0.119743663090825	0.825806767810962	0.998431161219273
Merged-chr9-116243907-4	chr9	116243828	116244028	+	959.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54748.0	NR_152204	100043817.0	Mm.404276	NR_152204		Gm4668	-	predicted gene 4668	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-19549684-3	chr10	19549573	19549773	+	763.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42276.0	NM_010511	15979.0	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-80555948-4	chr18	80555839	80556039	+	951.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11393.0	NR_028424	100039348.0	Mm.254722	NR_028424		Gm2176	A430076E10Rik	glucosamine-6-phosphate deaminase 1 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-54737591-2	chr6	54737491	54737691	+	574.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55967.0	NM_001289740	68235.0	Mm.233860	NM_026629	ENSMUSG00000038065	Mturn	2410066E13Rik|AI448550|B230212L03Rik	maturin, neural progenitor differentiation regulator homolog (Xenopus)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-98318418-3	chr7	98318329	98318529	+	799.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360615, intron 1 of 10)	intron (NM_001360615, intron 1 of 10)	2779.0	NM_001360615	66190.0	Mm.334041	NM_025408	ENSMUSG00000030760	Acer3	1110057L18Rik|5430429L08Rik|AV015045|Phca|aPHC	alkaline ceramidase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78606694-2	chr15	78606594	78606794	+	979.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028195, intron 4 of 12)	intron (NM_028195, intron 4 of 12)	9647.0	NM_028195	72318.0	Mm.32911	NM_028195	ENSMUSG00000018008	Cyth4	2510004M07Rik|5830469K17Rik|AI467541|Pscd4|mFLJ00017	cytohesin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118673493-2	chr9	118673393	118673593	+	808.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 11 of 27)	B3A|SINE|B2	-38199.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	1.76176696777072	2.31171423629844	1.92092266478181	1.86297221581594	1.01354621486814	1.34193569053338	1.06283587794446	2.17123486299294	-1.3740956675908	0.240284780995124	0.736569477638593
Merged-chr18-87066182-2	chr18	87066082	87066282	+	618.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	353871.0	NM_001361145	12405.0	Mm.70775	NM_172633	ENSMUSG00000024647	Cbln2	6330593N19Rik|A730004O05	cerebellin 2 precursor protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-14387933-4	chr19	14387794	14387994	+	960.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48056.0	NR_152176	667433.0	Mm.128913	NR_152176		Gm8630	EG667433	predicted gene 8630	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-38436121-2	chr2	38436021	38436221	+	987.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER77B|LTR|ERVL	-75576.0	NM_021606	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-46147109-2	chr18	46147009	46147209	+	547.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51709.0	NM_001170855	28105.0	Mm.277382	NM_178872	ENSMUSG00000033949	Trim36	D18Wsu100e|haprin	tripartite motif-containing 36	protein-coding	0.245034596300342	0.890648332258476	0.839446090871047	0.253866006321439	0.526089903420472	0.778309177152149	0.260688169623469	0.254793779739813	-0.758263869911502	0.694480816549634	1
Merged-chr2-72196246-3	chr2	72196011	72196211	+	733.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355478, intron 7 of 26)	intron (NM_001355478, intron 7 of 26)	-89526.0	NM_023057	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	1.07231851863922	1.02222982563576	1.29538312926522	0.489165213662832	0.636300295469128	0.714640458361368	0.689520777470421	0.490365054895979	-2.17185951476444	0.180676259752232	1
Merged-chr8-88099037-4	chr8	88098928	88099128	+	912.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151771, intron 2 of 7)	intron (NR_151771, intron 2 of 7)	19579.0	NR_151771	100040328.0	Mm.56398	NR_151771		Gm2716	4933416k23	predicted gene 2716	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-147040329-1	chr6	147040229	147040429	+	541.0	f1_balb.idr	Intergenic	L1VL2|LINE|L1	-2441.0	NM_145573	232536.0	Mm.46656	NM_145573	ENSMUSG00000040112	Mrps35	MDSO23|MRP-S28|MRPS28	mitochondrial ribosomal protein S35	protein-coding	-0.0504279042459373	-0.445277559886291	-0.450109742446862	-0.453855543453905	-0.459175775702334	0.446980314406428	-0.449041771376511	-0.453200036677711	1.55333327635875	0.560635577948653	1
Merged-chr19-6254413-2	chr19	6254313	6254513	+	549.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_194348, exon 24 of 40)	exon (NM_194348, exon 24 of 40)	-10230.0	NR_029830	723957.0		NR_029830	ENSMUSG00000065582	Mir194-2	Mirn194-2|mir-194-2	microRNA 194-2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-73901789-2	chr1	73901689	73901889	+	885.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37323.0	NR_045311	109198.0	Mm.359721	NR_045311	ENSMUSG00000100301	6030407O03Rik	-	RIKEN cDNA 6030407O03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98773022-4	chr11	98772938	98773138	+	991.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145434, intron 1 of 7)	intron (NM_145434, intron 1 of 7)	2339.0	NM_145434	217166.0	Mm.390397	NM_145434	ENSMUSG00000020889	Nr1d1	A530070C09Rik|R75201	nuclear receptor subfamily 1, group D, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-95323583-3	chr10	95323492	95323692	+	912.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001330138, exon 1 of 3)	5' UTR (NM_001330138, exon 1 of 3)	117.0	NM_001330138	12905.0	Mm.473739	NM_009950	ENSMUSG00000045867	Cradd	RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141278332-2	chr4	141278232	141278432	+	869.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_151527)	promoter-TSS (NR_151527)	-107.0	NR_151527	100503810.0		NR_151527	ENSMUSG00000085395	Gm13056	-	predicted gene 13056	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-27655200-2	chr7	27655100	27655300	+	652.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028417, intron 2 of 2)	intron (NM_028417, intron 2 of 2)	1276.0	NM_028417	73032.0	Mm.44095	NM_028417	ENSMUSG00000007944	Ttc9b	2900074C18Rik	tetratricopeptide repeat domain 9B	protein-coding	-0.0295621144192955	0.958885701897209	-0.00473093233226413	-0.0138802771151941	-0.0271883589961624	1.4730221875328	-0.0021540388750535	-0.012266413218424	1.05994845155572	0.620209608440331	0.978763712119577
Merged-chr12-3419590-2	chr12	3419503	3419703	+	910.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_030694, intron 1 of 2)	MTB|LTR|ERVL-MaLR	7144.0	NR_030694	100043040.0	Mm.415417	NR_030694	ENSMUSG00000071456	1110002L01Rik	-	RIKEN cDNA 1110002L01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-169459675-3	chr1	169459572	169459772	+	603.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	71792.0	NM_023284	66977.0	Mm.151315	NM_023284	ENSMUSG00000026683	Nuf2	2410003C07Rik|AU044112|C85691|Cdca1|NUF2R	NUF2, NDC80 kinetochore complex component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-101154364-2	chr4	101154264	101154464	+	793.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_146145, intron 24 of 24)	B2_Mm2|SINE|B2	85326.0	NM_183024	242570.0	Mm.185636	NM_183024	ENSMUSG00000035275	Raver2	A430091O22Rik	ribonucleoprotein, PTB-binding 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21925387-2	chr9	21925287	21925487	+	725.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045606, intron 3 of 4)	B1_Mur4|SINE|Alu	1901.0	NM_001253869	235043.0	Mm.253329	NM_178577	ENSMUSG00000040883	Tmem205	-	transmembrane protein 205	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84973930-2	chr8	84973811	84974011	+	864.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001317385, intron 5 of 5)	intron (NM_001317385, intron 5 of 5)	4289.0	NM_011563	21672.0	Mm.347009	NM_011563	ENSMUSG00000005161	Prdx2	AL022839|Band-8|NkefB|PRP|PrxII|TDX1|TPx|TPx-B|TR|TSA|Tdpx1|Torin	peroxiredoxin 2	protein-coding	3.16733353166201	2.28187797605596	3.70385727589237	3.77413355692511	3.11704041191448	2.67697725633358	3.28924692849714	3.27337125919463	-0.404431886409088	0.526787235486569	0.948839578239191
Merged-chr13-110363938-4	chr13	110363827	110364027	+	922.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6755.0	NM_177713	238875.0	Mm.30533	NM_177713	ENSMUSG00000046006	Gapt	9830130M13Rik	Grb2-binding adaptor, transmembrane	protein-coding	3.03153041395623	2.52213567879311	2.70999885551013	2.8500588011136	3.05652847455884	3.81113753382972	1.86512029593726	2.86495041730316	0.503334081742051	0.491936390049096	0.934850158278556
Merged-chr9-44124104-2	chr9	44124004	44124204	+	698.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_152189, exon 2 of 2)	non-coding (NR_152189, exon 2 of 2)	10381.0	NR_152189	100038560.0	Mm.429758	NR_152189		Gm10687	-	predicted gene 10687	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-98265810-4	chr12	98265710	98265910	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2825.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-63024755-3	chr10	63024641	63024841	+	858.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001079824)	promoter-TSS (NM_001079824)	229.0	NM_026085	67307.0	Mm.368563	NM_026085	ENSMUSG00000020072	Pbld2	3110049J23Rik|Mawbp	phenazine biosynthesis-like protein domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-45018043-4	chr19	45017926	45018126	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001130526)	promoter-TSS (NM_001130526)	-109.0	NM_001130526	226154.0	Mm.28204	NM_145503	ENSMUSG00000035342	Lzts2	BC014695|LAPSER1|mKIAA1813	leucine zipper, putative tumor suppressor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-59174181-4	chr6	59174056	59174256	+	963.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-34714.0	NM_001081145	68140.0	Mm.25843	NM_001081145	ENSMUSG00000049232	Tigd2	3632410O17Rik	tigger transposable element derived 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-110222556-2	chr7	110222456	110222656	+	843.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009302, intron 1 of 11)	intron (NM_009302, intron 1 of 11)	853.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-44698775-1	chr10	44698675	44698875	+	751.0	f0_balb.idr	Intergenic	Intergenic	-240027.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-5146841-3	chr16	5146729	5146929	+	852.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001127725)	promoter-TSS (NM_001127725)	-280.0	NM_001127725	665119.0	Mm.102072	NM_001127725	ENSMUSG00000091712	Sec14l5	-	SEC14-like lipid binding 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-75148435-3	chr14	75148336	75148536	+	704.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008879, intron 1 of 16)	intron (NM_008879, intron 1 of 16)	12011.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-80128077-4	chr17	80127981	80128181	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176963, intron 1 of 6)	intron (NM_176963, intron 1 of 6)	610.0	NM_176963	319625.0	Mm.29098	NM_176963	ENSMUSG00000035473	Galm	A530057M15Rik|AU015645|AU020959	galactose mutarotase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-7764789-4	chr9	7764698	7764898	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152989, intron 1 of 5)	intron (NR_152989, intron 1 of 5)	633.0	NR_152989	71929.0	Mm.283293	NM_133739	ENSMUSG00000050912	Tmem123	2310075C12Rik	transmembrane protein 123	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-100120403-2	chr12	100120303	100120503	+	600.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008947, intron 8 of 9)	B4|SINE|B4	8072.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3372114-2	chr12	3372014	3372214	+	790.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008445, intron 1 of 7)	intron (NM_008445, intron 1 of 7)	6982.0	NM_008445	16570.0	Mm.7688	NM_008445	ENSMUSG00000020668	Kif3c	mKIAA4058	kinesin family member 3C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-70713702-4	chr12	70713592	70713792	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-111822.0	NM_028127	319710.0	Mm.2962	NM_028127	ENSMUSG00000048285	Frmd6	2610019M19Rik|4930488L10Rik|AW212977|Willin	FERM domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-103504267-2	chr2	103504167	103504367	+	994.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19114.0	NM_009804	12359.0	Mm.4215	NM_009804	ENSMUSG00000027187	Cat	2210418N07|Cas-1|Cas1|Cs-1	catalase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-93798779-4	chr16	93798689	93798889	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027293, intron 27 of 36)	intron (NM_027293, intron 27 of 36)	-3888.0	NR_151466	102633000.0	Mm.443436	NR_151466		2310043M15Rik	-	RIKEN cDNA 2310043M15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100942156-2	chr11	100942056	100942256	+	834.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2616.0	NM_011486	20848.0	Mm.249934	NM_011486	ENSMUSG00000004040	Stat3	1110034C02Rik|AW109958|Aprf	signal transducer and activator of transcription 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-8818692-4	chr19	8818548	8818748	+	847.2291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081196)	promoter-TSS (NM_001081196)	646.0	NM_027412	70387.0	Mm.261082	NM_027412	ENSMUSG00000071660	Ttc9c	2210019E14Rik|6330408J23Rik	tetratricopeptide repeat domain 9C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-53496810-3	chr19	53496706	53496906	+	977.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA4|LINE|L1	-32010.0	NR_028427	381232.0	Mm.248624	NR_028427	ENSMUSG00000097636	Mirt1	4833407H14Rik|5430437C04Rik|5830416P10Rik|Gm10758	myocardial infarction associated transcript 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-88927311-3	chr6	88927281	88927481	+	714.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25130.0	NM_011906	24100.0	Mm.284480	NM_011906	ENSMUSG00000002871	Tpra1	40kDa|Gpr175|Tpra40	transmembrane protein, adipocyte asscociated 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-39386374-4	chr10	39386272	39386472	+	897.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122893, intron 1 of 13)	intron (NM_001122893, intron 1 of 13)	16573.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-99576053-4	chr5	99575930	99576130	+	881.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 1 of 3)	intron (NR_030692, intron 1 of 3)	153030.0	NR_030692	319818.0	Mm.295233	NR_030692	ENSMUSG00000089809	A930011G23Rik	-	RIKEN cDNA A930011G23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-126502535-4	chr10	126502441	126502641	+	909.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	207850.0	NR_105841	102465224.0		NR_105841	ENSMUSG00000098756	Mir378d	Gm27650|mmu-mir-378d	microRNA 378d	ncRNA	3.5534142461086	4.42116659528299	4.02022650797459	3.39570466724042	5.28216378259156	4.56590426706698	4.62334709132267	4.95164418159343	1.28152953947121	0.00214366458652533	0.0351042143436728
Merged-chr2-144459164-4	chr2	144459070	144459270	+	933.915466	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033459)	promoter-TSS (NR_033459)	-110.0	NR_033459	668917.0	Mm.152805	NR_033459	ENSMUSG00000083674	Zfp133-ps	Zfp133	zinc finger protein 133, pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-75179805-4	chr14	75179708	75179908	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008879, intron 2 of 16)	intron (NM_008879, intron 2 of 16)	43383.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-158118747-2	chr2	158118647	158118847	+	564.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009373, intron 12 of 12)	intron (NM_009373, intron 12 of 12)	-26950.0	NR_040609	72340.0	Mm.443395	NR_040609	ENSMUSG00000100860	2010009K17Rik	-	RIKEN cDNA 2010009K17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-101945324-2	chr5	101945224	101945424	+	575.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 10 of 66)	intron (NM_172882, intron 10 of 66)	124597.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34143197-4	chr17	34143100	34143300	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2216.0	NM_010388	15000.0	Mm.195060	NM_010388	ENSMUSG00000037548	H2-DMb2	H-2Mb2|H2-Mb2	histocompatibility 2, class II, locus Mb2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-7835222-4	chr10	7835076	7835276	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172785, intron 1 of 5)	intron (NM_172785, intron 1 of 5)	-1205.0	NR_039563	100628581.0		NR_039563	ENSMUSG00000093060	Mir5104	mir-5104|mmu-mir-5104|mu-mir-5104	microRNA 5104	ncRNA	5.07069209051634	4.84113768343283	4.2500597816194	5.47585132912002	5.07970712928431	4.28924399493836	5.1952610381583	4.67970420765428	-0.147833894823003	0.693168251637061	0.99740158133691
Merged-chr3-122984598-4	chr3	122984488	122984688	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133857)	promoter-TSS (NM_133857)	-141.0	NM_133857	99526.0	Mm.491248	NM_133857	ENSMUSG00000039701	Usp53	AA939927|Phxr3|Sp6|mKIAA1350|mbo	ubiquitin specific peptidase 53	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-39737662-4	chr15	39737573	39737773	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8257.0	NM_001289506	75766.0	Mm.159563	NM_029422	ENSMUSG00000022303	Dcstamp	4833414I07Rik|DC-STAMP|FIND|Tm7sf4|mDC-STAMP	dendrocyte expressed seven transmembrane protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-34753097-2	chr2	34752997	34753197	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_151469, intron 2 of 26)	B1_Mm|SINE|Alu	2135.0	NM_001356441	66691.0	Mm.156452	NM_025709	ENSMUSG00000026867	Gapvd1	2010005B09Rik|4432404J10Rik|AW108497|Gapex-5|RAP6|RME-6|mKIAA1521	GTPase activating protein and VPS9 domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-33147368-2	chr11	33147268	33147468	+	690.541626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_102395)	promoter-TSS (NR_102395)	32.0	NM_008005	14172.0	Mm.339812	NM_008005	ENSMUSG00000057967	Fgf18	D130055P09Rik|FGF-18	fibroblast growth factor 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-25116650-3	chr14	25116508	25116708	+	858.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7347.0	NR_153781	102634576.0	Mm.317855	NR_153781		Gm32123	-	predicted gene, 32123	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-100480187-2	chr12	100480087	100480287	+	975.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033213, intron 3 of 19)	intron (NM_001033213, intron 3 of 19)	40635.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-113678410-2	chr6	113678310	113678510	+	732.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 7 of 11)	intron (NM_001113553, intron 7 of 11)	-18640.0	NM_001347356	381801.0	Mm.333322	NM_001033463	ENSMUSG00000056952	Tatdn2	AI646012|mKIAA0218	TatD DNase domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3935223-4	chr19	3935118	3935318	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161428)	promoter-TSS (NM_001161428)	32.0	NM_001161428	54445.0	Mm.262094	NM_019449	ENSMUSG00000036908	Unc93b1	Unc-93B1|Unc93b	unc-93 homolog B1 (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-88283497-2	chr1	88283397	88283597	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-5918.0	NM_198652	381280.0	Mm.384762	NM_198652	ENSMUSG00000044783	Hjurp	6430706D22Rik|A730008H23Rik|C330011F01Rik|Gm975|Mfleg1	Holliday junction recognition protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-78648256-1	chr17	78648156	78648356	+	657.0	f1_c57bl6.idr	Intergenic	Intergenic	88304.0	NM_011500	268980.0	Mm.311915	NM_011500	ENSMUSG00000024077	Strn	AU022939|D130055P19	striatin, calmodulin binding protein	protein-coding	1.81390522560581	1.17378956010976	3.22232898836549	2.18140949699327	1.51349465585498	1.1813665641483	2.58264480930412	2.07148704031264	-0.830729820754579	0.441618507514976	0.910854758069075
Merged-chr3-69017402-3	chr3	69017288	69017488	+	866.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356976, intron 7 of 23)	B4A|SINE|B4	7486.0	NR_029735	723949.0		NR_029735	ENSMUSG00000065606	Mir16-2	Mirn16-2|mir-16-2	microRNA 16-2	ncRNA	2.0445407253038	1.28337915693735	2.40799903450719	2.04654622661862	1.8476502947126	1.74293199846661	1.99635266863481	2.35176035603648	-0.0168444437155984	0.986389864056458	0.998431161219273
Merged-chr11-86566380-2	chr11	86566280	86566480	+	579.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199046, intron 9 of 9)	intron (NM_001199046, intron 9 of 9)	17778.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32712363-4	chr2	32712316	32712516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_037217)	TTS (NR_037217)	368.0	NM_130860	107951.0	Mm.27557	NM_130860	ENSMUSG00000009555	Cdk9	PITALRE	cyclin-dependent kinase 9 (CDC2-related kinase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-35021513-4	chr12	35021363	35021563	+	827.55835	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25726.0	NM_001014973	217463.0	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-54781165-4	chr6	54781067	54781267	+	682.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	-35749.0	NM_199143	387524.0	Mm.286149	NM_199143	ENSMUSG00000058446	Znrf2	1190002C14Rik|AU044205|D6Ertd365e	zinc and ring finger 2	protein-coding	2.30192880615327	1.96463890140114	1.00018747762558	1.2138796750731	2.32291647506154	1.98085308617302	1.00545596370553	1.21951952515069	0.0402324018717515	0.974026007894856	0.998431161219273
Merged-chr15-25919152-2	chr15	25919052	25919252	+	735.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001034851, intron 3 of 8)	B1F1|SINE|Alu	-14400.0	NM_001277318	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116918803-4	chr11	116918701	116918901	+	819.783325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172948)	promoter-TSS (NM_172948)	-62.0	NM_172948	268510.0	Mm.35141	NM_172948	ENSMUSG00000043857	Mgat5b	C330018B01|GnT-IX|mGnTVB	mannoside acetylglucosaminyltransferase 5, isoenzyme B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89279667-4	chr3	89279574	89279774	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010107)	promoter-TSS (NM_010107)	-29.0	NM_010107	13636.0	Mm.15675	NM_010107	ENSMUSG00000027954	Efna1	AI325262|B61|Efl1|Epl1|Eplg1|Lerk1	ephrin A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-50728041-3	chr9	50727904	50728104	+	681.722229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178118)	promoter-TSS (NM_178118)	-20.0	NM_178118	330938.0	Mm.82598	NM_178118	ENSMUSG00000032064	Dixdc1	4930563F16Rik|BC048182|Ccd1|Ccd1Aalpha1L|Ccd1Abeta1L|Ccd1BalphaL|Ccd1BbetaL|Ccd1CL|mKIAA1735	DIX domain containing 1	protein-coding	1.84705351401536	1.7983951536158	2.83752185560092	1.82761131760703	1.60988546891325	2.10688708487287	1.11567835162368	1.33130069289076	-1.53589768356733	0.147711746348729	0.597789138528913
Merged-chr10-86703208-1	chr10	86703108	86703308	+	557.0	f0_balb.idr	intron (NM_011631, intron 3 of 17)	intron (NM_011631, intron 3 of 17)	2236.0	NM_011631	22027.0	Mm.87773	NM_011631	ENSMUSG00000020048	Hsp90b1	ERp99|GRP94|TA-3|Targ2|Tra-1|Tra1|endoplasmin|gp96	heat shock protein 90, beta (Grp94), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-69163301-4	chr3	69163186	69163386	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVL-int|LTR|ERVL	32053.0	NR_126533	381452.0	Mm.331067	NM_001243000	ENSMUSG00000094763	Gm1647	-	predicted gene 1647	ncRNA	4.695615737264	5.12401381275463	4.36548223525915	4.51053965084928	5.04032375390059	5.1941521570928	4.39860543484975	5.04463231162062	0.306492111490745	0.389103903324005	0.878578793881975
Merged-chr15-59523001-2	chr15	59522901	59523101	+	684.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_026746, intron 4 of 6)	intron (NM_026746, intron 4 of 6)	-125653.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-93763342-2	chr10	93763235	93763435	+	606.549988	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68220.0	NM_001206851	327799.0	Mm.491598	NM_183199	ENSMUSG00000020020	Usp44	E430004F17Rik	ubiquitin specific peptidase 44	protein-coding	1.64773987456108	2.84883123682188	1.31264927931668	2.2999919828836	2.69702434867038	1.85448607076505	2.12980778859617	2.68658402713056	0.494419995423307	0.604286114451541	0.973881723093435
Merged-chr9-107590199-2	chr9	107590099	107590299	+	836.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025903, intron 3 of 11)	intron (NM_025903, intron 3 of 11)	2481.0	NM_025903	15983.0	Mm.215335	NM_025903	ENSMUSG00000010048	Ifrd2	1810034A24Rik|AA470234|AI838527|SKMc15	interferon-related developmental regulator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102878520-4	chr12	102878425	102878625	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172806)	promoter-TSS (NM_172806)	-119.0	NM_172806	238386.0	Mm.63456	NM_172806	ENSMUSG00000041702	Btbd7	5730507E09Rik|8030448M07|E130118E17Rik|FUP1|mKIAA1525	BTB (POZ) domain containing 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6998315-2	chr19	6998215	6998415	+	636.75	f1_balb.idr|f1_c57bl6.idr	TTS (NM_153795)	TTS (NM_153795)	2184.0	NR_027351	107328.0	Mm.391161	NM_153597	ENSMUSG00000047656	Trpt1	AU079016|AW045591|Tpt1|Tpt1h	tRNA phosphotransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24206690-3	chr17	24206596	24206796	+	913.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010947, exon 6 of 6)	exon (NM_010947, exon 6 of 6)	-1134.0	NM_001163850	224617.0	Mm.301585	NM_173186	ENSMUSG00000036473	Tbc1d24	9630033P11|C530046L02Rik|mKIAA1171	TBC1 domain family, member 24	protein-coding	3.57583542183771	2.4575385778354	2.94184182563409	3.38958716941306	3.74883795912206	2.65295657133945	2.38965952475761	3.72030774819288	0.184402799594468	0.785195492170647	0.998431161219273
Merged-chr16-64850085-2	chr16	64849985	64850185	+	651.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347245, intron 1 of 8)	intron (NM_001347245, intron 1 of 8)	1638.0	NM_001347245	72020.0	Mm.25960	NM_028059	ENSMUSG00000047141	Zfp654	1600021C16Rik|1810008K20Rik|433036|Gm5488|Znf654	zinc finger protein 654	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-81536346-3	chr18	81536246	81536446	+	785.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	455734.0	NR_039589	100628596.0		NR_039589	ENSMUSG00000093036	Mir5127	mmu-mir-5127|mu-mir-5127	microRNA 5127	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-14520550-2	chr19	14520450	14520650	+	643.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001302950, intron 5 of 18)	intron (NM_001302950, intron 5 of 18)	76663.0	NM_001302951	21888.0	Mm.103638	NM_011600	ENSMUSG00000024642	Tle4	5730411M05Rik|AA792082|Bce-1|Bce1|ESTM13|ESTM14|Grg4|X83332|X83333|grg-4	transducin-like enhancer of split 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-173733322-1	chr1	173733222	173733422	+	656.5	f0_balb.idr	intron (NM_001204910, intron 3 of 7)	RLTR44C|LTR|ERVK	8487.0	NM_001204910	226691.0	Mm.440876	NM_001204910	ENSMUSG00000073490	Ifi207	AI607873|Pyhin-A|pyhinA	interferon activated gene 207	protein-coding	0.526362937246498	0.592148832329333	0.40909886991187	0.404632265745028	0.929480239771435	1.08778047150059	0.84244195407374	0.405410466736616	2.79764520634471	0.123221542043177	1
Merged-chr1-10009161-4	chr1	10009052	10009252	+	718.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_110971)	promoter-TSS (NR_110971)	-16.0	NM_145692	69312.0	Mm.386795	NM_027033	ENSMUSG00000025916	Ppp1r42	1700011J18Rik|4930418G15Rik|Lrrc67|TLRR	protein phosphatase 1, regulatory subunit 42	protein-coding	1.6780571411685	2.24947943111472	1.94346067419932	1.43307973103447	2.02238479079448	1.87808111837334	2.28977825581029	1.76771621384371	0.405079152201422	0.676728630184968	0.99440487726309
Merged-chr18-54699002-3	chr18	54698902	54699102	+	719.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	87258.0	NR_045400	328957.0	Mm.402781	NR_045400		9330117O12Rik	9330117O12	RIKEN cDNA 9330117O12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-155199861-2	chr4	155199761	155199961	+	621.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_011385, intron 1 of 6)	intron (NM_011385, intron 1 of 6)	22674.0	NM_011385	20481.0	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-43583064-2	chr7	43582964	43583164	+	839.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357769, intron 1 of 3)	intron (NM_001357769, intron 1 of 3)	3478.0	NM_001357769	210105.0	Mm.234422	NM_172482	ENSMUSG00000030469	Zfp719	8030458J18|9430094P17Rik|C630016O21Rik|mszf6	zinc finger protein 719	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-57928039-3	chr4	57927946	57928146	+	693.722229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11782.0	NM_178727	242484.0	Mm.23214	NM_178727	ENSMUSG00000052117	D630039A03Rik	-	RIKEN cDNA D630039A03 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83044975-4	chr6	83044850	83045050	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013586, intron 4 of 13)	intron (NM_013586, intron 4 of 13)	-4761.0	NR_106007	102465630.0		NR_106007	ENSMUSG00000099035	Mir7040	Gm27489|mmu-mir-7040	microRNA 7040	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116885476-4	chr11	116885405	116885605	+	910.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31505.0	NM_001361586	69900.0	Mm.348004	NM_178620	ENSMUSG00000020818	Mfsd11	2600014M03Rik	major facilitator superfamily domain containing 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-122753932-3	chr2	122753837	122754037	+	684.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11422.0	NM_001162503	59010.0	Mm.28986	NM_021507	ENSMUSG00000005803	Sqor	0610039J17Rik|4930557M22Rik|Sqrdl	sulfide quinone oxidoreductase	protein-coding	3.58560381423948	2.32424926595787	3.48589961333235	3.32561488015912	2.70689464415706	1.59602995534031	3.22110243193967	2.18486617842714	-1.226290916832	0.108387512801251	0.515363294024866
Merged-chr16-36749940-2	chr16	36749840	36750040	+	568.083374	f1_balb.idr|f1_c57bl6.idr	TTS (NM_021301)	TTS (NM_021301)	35022.0	NM_001145899	57738.0	Mm.281804	NM_021301	ENSMUSG00000022899	Slc15a2	8430408C16Rik|C78862|Pept2	solute carrier family 15 (H+/peptide transporter), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-51600499-2	chr11	51600399	51600599	+	708.25	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010448, exon 7 of 7)	3' UTR (NM_010448, exon 7 of 7)	6382.0	NM_001048061	15384.0	Mm.256875	NM_010448	ENSMUSG00000020358	Hnrnpab	3010025C11Rik|CBF-A|Cgbfa|Hnrpab	heterogeneous nuclear ribonucleoprotein A/B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116678308-3	chr11	116678212	116678412	+	741.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009180, intron 8 of 8)	intron (NM_009180, intron 8 of 8)	3715.0	NR_028570	100216538.0		NR_028570	ENSMUSG00000065094	Snord1a	snR38	small nucleolar RNA, C/D box 1A	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-113779114-2	chr5	113779014	113779214	+	638.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_025526)	TTS (NM_025526)	6302.0	NM_025526	66383.0	Mm.29497	NM_025526	ENSMUSG00000025825	Iscu	2310020H20Rik|AA407971|Nifu|Nifun	iron-sulfur cluster assembly enzyme	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-21215469-4	chr2	21215356	21215556	+	939.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_177588)	TTS (NM_177588)	9732.0	NM_177588	208967.0	Mm.268841	NM_177588	ENSMUSG00000048550	Thnsl1	AW413632	threonine synthase-like 1 (bacterial)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-67052592-4	chr11	67052472	67052672	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025510)	promoter-TSS (NM_025510)	46.0	NM_025510	66358.0	Mm.22511	NM_025510	ENSMUSG00000020910	Adprm	2310004I24Rik|MDS006	ADP-ribose/CDP-alcohol diphosphatase, manganese dependent	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-113872401-4	chr5	113872321	113872521	+	991.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011779, intron 2 of 10)	intron (NM_011779, intron 2 of 10)	36285.0	NM_011779	23790.0	Mm.260158	NM_011779	ENSMUSG00000004530	Coro1c	AL022675|AW455561|AW548837	coronin, actin binding protein 1C	protein-coding	3.13778831882437	3.32280579413682	3.49394608923133	3.21695530300164	3.47151339803458	3.639525310438	4.26398919576704	3.77383088304629	0.798640770401836	0.126939279051307	0.557473451704825
Merged-chr2-27247391-3	chr2	27247293	27247493	+	938.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138665)	promoter-TSS (NM_138665)	-90.0	NM_138665	192166.0	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180863409-2	chr1	180863309	180863509	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145943, intron 6 of 6)	B3|SINE|B2	12258.0	NM_145943	208768.0	Mm.272625	NM_145943	ENSMUSG00000038806	Sde2	-	SDE2 telomere maintenance homolog (S. pombe)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-65342788-3	chr14	65342684	65342884	+	808.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15892.0	NM_199029	380912.0	Mm.270087	NM_199029	ENSMUSG00000034522	Zfp395	BC053701|Gm910	zinc finger protein 395	protein-coding	1.09477537777254	1.99990295737396	2.76117643667803	2.30706060575575	1.49976234936602	2.01542382822731	1.7949976850741	1.57256281774984	-1.16852600752212	0.265342895053949	0.767868802425779
Merged-chr4-133178500-1	chr4	133178400	133178600	+	619.0	f0_balb.idr	intron (NM_153423, intron 2 of 8)	intron (NM_153423, intron 2 of 8)	-17155.0	NR_105984	102466215.0		NR_105984	ENSMUSG00000099202	Mir7017	Gm27945|mmu-mir-7017	microRNA 7017	ncRNA	3.79621546160431	3.04937017276026	3.32715044262485	2.96781717488898	2.62620233125178	2.81511016224296	2.851319796326	3.47113327503024	-0.594306391592681	0.344619022994704	0.845794803766071
Merged-chr9-96397178-2	chr9	96397078	96397278	+	575.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32747.0	NM_001357212	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	1.13688076069754	0.512281885046744	1.27455801243998	0.492119474518545	0.805660373297747	0.51480610155002	1.57261210996746	0.493674683696898	0.145891743836726	0.931916730239992	0.998431161219273
Merged-chr1-92908011-1	chr1	92907911	92908111	+	554.0	f1_balb.idr	TTS (NR_138577)	TTS (NR_138577)	1022.0	NM_175118	67446.0	Mm.46179	NM_175118	ENSMUSG00000047067	Dusp28	0710001B24Rik|AV005521	dual specificity phosphatase 28	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80054102-2	chr10	80054002	80054202	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001037741)	promoter-TSS (NM_001037741)	83.0	NM_001037741	625249.0	Mm.332810	NM_008162	ENSMUSG00000075706	Gpx4	GPx-4|GSHPx-4|PHGPx|mtPHGPx|snGPx	glutathione peroxidase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-29870390-4	chr11	29870287	29870487	+	881.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146016, intron 7 of 41)	L1M2|LINE|L1	-44719.0	NM_176829	216622.0	Mm.443260	NM_176829	ENSMUSG00000078157	4931440F15Rik	Fem1ab	RIKEN cDNA 4931440F15 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98787538-2	chr11	98787438	98787638	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7978.0	NM_001361931	74026.0	Mm.258352	NM_028722	ENSMUSG00000052915	Msl1	2810017F12Rik|4121402D02Rik|4930463F05Rik|AA682082|Msl-1	male specific lethal 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-47459694-1	chr19	47459594	47459794	+	543.0	f1_c57bl6.idr	intron (NM_008018, intron 1 of 14)	intron (NM_008018, intron 1 of 14)	4717.0	NM_001164717	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	1.15839541822231	1.28073977117696	1.37718643101906	1.3392469569235	1.03147595011587	1.28946562520733	1.50856045317873	1.46027611396982	0.197480619919138	0.869404504223728	0.998431161219273
Merged-chr10-94553178-3	chr10	94553023	94553223	+	803.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359760, intron 1 of 3)	intron (NM_001359760, intron 1 of 3)	2203.0	NM_001359760	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46792868-4	chr8	46792751	46792951	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152560, intron 1 of 7)	intron (NR_152560, intron 1 of 7)	53106.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-79214212-4	chr11	79214110	79214310	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28814.0	NM_001042565	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-23727703-4	chr11	23727612	23727812	+	811.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033654, intron 16 of 17)	intron (NM_001033654, intron 16 of 17)	43258.0	NM_009044	19696.0	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-83430780-4	chr17	83430649	83430849	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357886, intron 5 of 21)	intron (NM_001357886, intron 5 of 21)	79818.0	NM_001357886	78798.0	Mm.295565	NM_199466	ENSMUSG00000032624	Eml4	4930443C24Rik|AI644019	echinoderm microtubule associated protein like 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133013203-2	chr4	133013103	133013303	+	619.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146155, intron 2 of 6)	intron (NM_146155, intron 2 of 6)	1697.0	NM_146155	230793.0	Mm.31816	NM_146155	ENSMUSG00000037692	Ahdc1	D030015G18Rik	AT hook, DNA binding motif, containing 1	protein-coding	1.13473054283289	0.868834821775113	0.658594002639706	1.30693955345216	1.14571272205805	0.874550614891494	0.660698066040756	1.31522083388149	0.034895776868963	0.981254428480068	0.998431161219273
Merged-chr12-69419809-3	chr12	69419705	69419905	+	768.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47655.0	NM_007481	11845.0	Mm.27308	NM_007481	ENSMUSG00000044147	Arf6	AI788669|AW496366	ADP-ribosylation factor 6	protein-coding	2.622473779367	3.35449496217747	3.02855530024966	3.2076997583051	1.14651108268922	2.41569747789896	1.25230153367745	1.21066780798509	-3.29326866960309	0.000784795891025815	0.0159053734806212
Merged-chr17-46554835-2	chr17	46554735	46554935	+	913.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_105942)	promoter-TSS (NR_105942)	-946.0	NR_105942	102466778.0		NR_105942	ENSMUSG00000106514	Mir6976	mmu-mir-6976	microRNA 6976	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-95215369-4	chr4	95215272	95215472	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19C|LTR|ERVK	-163150.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	3.54934321119915	3.24741406388688	4.13951346298398	3.4359205349731	4.29857812918259	4.12683404653063	3.03397241086502	3.53624312388268	0.298878500679606	0.578764946745085	0.965985075107763
Merged-chr2-132600286-4	chr2	132600181	132600381	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033469, intron 1 of 3)	intron (NR_033469, intron 1 of 3)	2085.0	NR_033469	767814.0	Mm.371752	NR_033468	ENSMUSG00000074783	AU019990	-	expressed sequence AU019990	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-73769942-4	chr16	73769857	73770057	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	572110.0	NR_030464	751561.0		NR_030464	ENSMUSG00000104758	Mir691	Mirn691|mir-691|mmu-mir-691	microRNA 691	ncRNA	2.84356900977815	3.42781713811122	2.81540835087386	2.07106868710076	3.55167808901599	2.82844514910303	1.72010830526347	1.38719194905651	-0.342584725953498	0.700666706561452	0.998431161219273
Merged-chr8-18936405-4	chr8	18936311	18936511	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176951, intron 6 of 6)	intron (NM_176951, intron 6 of 6)	14460.0	NM_001286469	319581.0	Mm.111354	NM_176951	ENSMUSG00000039814	Xkr5	5430438H03Rik|XRG5	X-linked Kx blood group related 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-122679404-4	chr10	122679270	122679470	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_106182)	promoter-TSS (NR_106182)	55.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-83666774-4	chr17	83666663	83666863	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34868.0	NM_153512	225030.0	Mm.223506	NM_153512	ENSMUSG00000045053	Kcng3	KV6.3|Kv10.1a|Kv10.1b	potassium voltage-gated channel, subfamily G, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-57183594-2	chr2	57183494	57183694	+	780.700012	f1_balb.idr|f1_c57bl6.idr	intron (NR_040633, intron 1 of 3)	intron (NR_040633, intron 1 of 3)	1763.0	NR_040633	75279.0	Mm.401987	NR_040633	ENSMUSG00000086396	4930555B11Rik	-	RIKEN cDNA 4930555B11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-36902028-4	chr15	36901932	36902132	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-105103.0	NM_001253806	22631.0	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-13396252-3	chr2	13396169	13396369	+	847.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081084, intron 28 of 66)	intron (NM_001081084, intron 28 of 66)	95607.0	NM_001081084	65969.0	Mm.313915	NM_001081084	ENSMUSG00000026726	Cubn	AA408369|AL022750|D2Wsu88e	cubilin (intrinsic factor-cobalamin receptor)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-116535468-1	chr2	116535368	116535568	+	562.0	f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	-343223.0	NM_001355572	67356.0	Mm.131623	NM_026104	ENSMUSG00000027355	Tmco5	1700095F04Rik|Tmco5a	transmembrane and coiled-coil domains 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-84680130-2	chr7	84680030	84680230	+	686.299988	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360579)	promoter-TSS (NM_001360579)	-734.0	NM_001360581	65098.0	Mm.209349	NM_022985	ENSMUSG00000030629	Zfand6	3110005P07Rik|Awp1|Za20d3	zinc finger, AN1-type domain 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46690076-4	chr19	46689968	46690168	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_025563, exon 1 of 5)	exon (NM_025563, exon 1 of 5)	162.0	NM_025563	66439.0	Mm.87163	NM_025563	ENSMUSG00000062376	Borcs7	2010012O05Rik|4930569L17Rik|AI413851|AI467257	BLOC-1 related complex subunit 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-51530535-3	chr10	51530421	51530621	+	940.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MuRRS4-int|LTR|ERV1	39623.0	NM_013532	14728.0	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117120404-2	chr11	117120304	117120504	+	997.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166507, intron 2 of 16)	intron (NM_001166507, intron 2 of 16)	5232.0	NM_001166506	74136.0	Mm.272312	NM_028777	ENSMUSG00000020823	Sec14l1	1200017E04Rik|2810012L19Rik|Naa-35	SEC14-like lipid binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-92799776-1	chr1	92799676	92799876	+	671.0	f0_balb.idr	Intergenic	Intergenic	-31869.0	NM_016696	14733.0	Mm.297976	NM_016696	ENSMUSG00000034220	Gpc1	AI462976	glypican 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-97974982-2	chr13	97974882	97975082	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_012026, intron 16 of 35)	intron (NM_012026, intron 16 of 35)	223870.0	NR_152263	111365222.0	Mm.440079	NR_152263		Eyelinc18	-	uncharacterized EyeLinc18	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-69076472-4	chr17	69076410	69076610	+	865.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355732, intron 1 of 21)	CpG	833.0	NM_001355732	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-153918696-4	chr1	153918597	153918797	+	981.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18768.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140765011-4	chr5	140764914	140765114	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010302, intron 2 of 3)	PB1D10|SINE|Alu	40887.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-132332992-4	chr1	132332889	132333089	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028778, exon 7 of 7)	3' UTR (NM_028778, exon 7 of 7)	16864.0	NM_028778	74137.0	Mm.100666	NM_028778	ENSMUSG00000009772	Nuak2	1200013B22Rik|Omphk2|Snark|mKIAA0537	NUAK family, SNF1-like kinase, 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-90322876-4	chr15	90322745	90322945	+	873.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30865.0	NR_155426	102640415.0	Mm.394352	NR_155426	ENSMUSG00000116204	Gm36480	-	predicted gene, 36480	ncRNA	3.29035199855291	4.37542617044572	2.48885784135319	3.47092370248062	3.7698249356472	4.25225996731526	3.32843269881988	3.22245776084942	0.192731730929339	0.747592799440025	0.998431161219273
Merged-chr10-88578804-4	chr10	88578718	88578918	+	969.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252372, intron 2 of 28)	intron (NM_001252372, intron 2 of 28)	26334.0	NM_001252372	109272.0	Mm.147208	NM_175418	ENSMUSG00000020061	Mybpc1	8030451F13Rik	myosin binding protein C, slow-type	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-103206595-4	chr3	103206486	103206686	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34931.0	NM_001356331	68183.0	Mm.104919	NM_026602	ENSMUSG00000005687	Bcas2	6430539P16Rik|AI132645|C76366|C80030	breast carcinoma amplified sequence 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-90011708-2	chr7	90011608	90011808	+	763.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17451.0	NR_110365	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90483969-1	chr2	90483869	90484069	+	942.0	f1_balb.idr	intron (NM_008982, intron 1 of 23)	RLTR11C_MM|LTR|ERVK	-4795.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-58477150-3	chr2	58477102	58477302	+	682.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355048, intron 5 of 10)	intron (NM_001355048, intron 5 of 10)	84208.0	NM_001355049	11477.0	Mm.689	NM_007394	ENSMUSG00000026836	Acvr1	ALK2|ActR-I|ActRIA|Acvr|Acvrlk2|Alk-2|Alk8|D330013D15Rik|SKR1|Tsk7L	activin A receptor, type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-8443822-4	chr11	8443719	8443919	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 27 of 30)	intron (NM_001083587, intron 27 of 30)	220716.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-103044292-2	chr14	103044192	103044392	+	683.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2720.0	NM_008392	16365.0	Mm.4662	NM_008392	ENSMUSG00000022126	Acod1	AI323667|CAD|Irg1	aconitate decarboxylase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141455405-1	chr7	141455305	141455505	+	1000.0	f0_c57.idr	exon (NM_001163689, exon 1 of 9)	exon (NM_001163689, exon 1 of 9)	217.0	NM_001163689	66853.0	Mm.29998	NM_025802	ENSMUSG00000025509	Pnpla2	0610039C21Rik|1110001C14Rik|Atgl|TTS-2.2	patatin-like phospholipase domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-7992797-4	chr10	7992687	7992887	+	939.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36664.0	NM_138667	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25395289-4	chr7	25395190	25395390	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_073027, exon 2 of 6)	non-coding (NR_073027, exon 2 of 6)	577.0	NR_015569	654804.0	Mm.389841	NM_001039540	ENSMUSG00000053714	4732471J01Rik	-	RIKEN cDNA 4732471J01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-53312892-2	chr11	53312792	53312992	+	789.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11797.0	NM_026479	67966.0	Mm.288072	NM_026479	ENSMUSG00000018239	Zcchc10	2410141K03Rik|AA675321|D11Ertd416e	zinc finger, CCHC domain containing 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-136148059-1	chr4	136147959	136148159	+	1000.0	f0_balb.idr	Intergenic	CpG	4237.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-4134608-1	chr8	4134508	4134708	+	930.0	f1_balb.idr	promoter-TSS (NM_027343)	promoter-TSS (NM_027343)	-128.0	NM_027343	70192.0	Mm.390006	NM_027343	ENSMUSG00000079168	Cd209g	2310066I10Rik|AI481039|SIGNR7	CD209g antigen	protein-coding	0.435101102934084	0.480992285873492	1.93206716934195	1.37934500617956	0.438091097573639	0.484226171793745	1.07359409561455	0.683194539058284	-2.13441339013739	0.202567083540952	0.688808411556785
Merged-chr1-89577881-2	chr1	89577781	89577981	+	543.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037136, intron 1 of 16)	intron (NM_001037136, intron 1 of 16)	106011.0	NR_015540	74403.0	Mm.444291	NR_015540		4933400F21Rik	1700091C04Rik|4930565K10Rik	RIKEN cDNA 4933400F21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-53692798-2	chr16	53692698	53692898	+	996.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus4|LINE|L1	-877054.0	NR_040495	73820.0	Mm.60493	NR_040495		4930404A05Rik	-	RIKEN cDNA 4930404A05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141269893-2	chr7	141269793	141269993	+	651.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_028069, exon 13 of 14)	exon (NM_028069, exon 13 of 14)	-3469.0	NM_001252600	54123.0	Mm.3233	NM_016850	ENSMUSG00000025498	Irf7	-	interferon regulatory factor 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129570919-4	chr2	129570799	129570999	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21940.0	NM_001291020	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-83722061-4	chr2	83721953	83722153	+	893.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2344.0	NM_008402	16410.0	Mm.227	NM_008402	ENSMUSG00000027087	Itgav	1110004F14Rik|2610028E01Rik|CD51|D430040G12Rik	integrin alpha V	protein-coding	1.492755039512	1.13531778919825	0.746301423119744	0.916039856300808	1.50747511198583	1.14394988793319	0.94314717729764	1.07147872888738	0.323782287701913	0.812272527574934	0.998431161219273
Merged-chr8-95712841-1	chr8	95712741	95712941	+	634.0	f1_balb.idr	intron (NM_001195006, intron 14 of 14)	intron (NM_001195006, intron 14 of 14)	-3072.0	NM_001035123	66083.0	Mm.261321	NM_001035123	ENSMUSG00000031671	Setd6	0610039J04Rik|3110004G14Rik|AI413388|C76402	SET domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-8999445-2	chr3	8999343	8999543	+	787.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	4761.0	NM_001357073	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-77266805-2	chr5	77266705	77266905	+	918.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011263, intron 1 of 3)	CpG	1311.0	NM_011263	19712.0	Mm.28840	NM_011263	ENSMUSG00000029249	Rest	2610008J04Rik|AA407358|NRSF|REST4	RE1-silencing transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114680961-4	chr11	114680894	114681094	+	866.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053273, intron 1 of 13)	intron (NM_053273, intron 1 of 13)	5526.0	NM_053273	117160.0	Mm.271934	NM_053273	ENSMUSG00000034714	Ttyh2	1110001A03Rik	tweety family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140704902-4	chr5	140704807	140705007	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001276287)	promoter-TSS (NM_001276287)	-104.0	NM_181066	231841.0	Mm.271932	NM_172724	ENSMUSG00000000148	Brat1	AA881470|Baat1	BRCA1-associated ATM activator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70319640-2	chr11	70319540	70319740	+	564.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_145684, exon 8 of 14)	exon (NM_145684, exon 8 of 14)	2890.0	NM_145684	11685.0	Mm.274093	NM_145684	ENSMUSG00000018907	Alox12e	12-LOX|8-LOX|AW259591|Alox12-ps1|Alox12-ps2|Aloxe|e-LOX1	arachidonate lipoxygenase, epidermal	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-119408347-2	chr13	119408247	119408447	+	859.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001308506, intron 1 of 16)	intron (NM_001308506, intron 1 of 16)	664.0	NM_008710	18115.0	Mm.132584	NM_008710	ENSMUSG00000116207	Nnt	4930423F13Rik|AI323702|BB168308	nicotinamide nucleotide transhydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-36726583-4	chr5	36726468	36726668	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22111.0	NM_133724	117197.0	Mm.46744	NM_133724	ENSMUSG00000060708	Bloc1s4	2610101N07Rik|Blos4|Cno	biogenesis of lysosomal organelles complex-1, subunit 4, cappuccino	protein-coding	5.81261328015192	6.40571447586927	5.94240024303142	6.58455671962118	5.61614901685198	6.71529803305901	6.34428557836753	6.33572172212241	0.0850967443669399	0.749337660309922	0.998431161219273
Merged-chr10-57743835-4	chr10	57743729	57743929	+	945.0750119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41094.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-26965327-2	chr8	26965227	26965427	+	742.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12009.0	NM_001101502	353310.0	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-24486149-2	chr14	24486049	24486249	+	710.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081247, intron 1 of 30)	intron (NM_001081247, intron 1 of 30)	909.0	NM_001081247	218832.0	Mm.343610	NM_183157	ENSMUSG00000025280	Polr3a	9330175N20Rik|BC053071|RPC1|RPC155	polymerase (RNA) III (DNA directed) polypeptide A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-120909936-4	chr4	120909808	120910008	+	811.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15097.0	NM_028457	73172.0	Mm.151436	NM_028457	ENSMUSG00000028629	Exo5	3110037I16Rik|AV297100|Dem1|Exo V|mExo5	exonuclease 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-75069662-6	chr14	75069558	75069758	+	890.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030568, intron 2 of 3)	intron (NR_030568, intron 2 of 3)	53631.0	NM_198642	271221.0	Mm.320280	NM_198642	ENSMUSG00000034959	Rubcnl	5031414D18Rik|Gm744|Gm911|Kiaa0226l	RUN and cysteine rich domain containing beclin 1 interacting protein like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95295856-2	chr3	95295756	95295956	+	590.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_023628)	TTS (NM_023628)	10948.0	NM_001085383	71790.0	Mm.218844	NM_023628	ENSMUSG00000015702	Anxa9	1110003P15Rik|2310069F17Rik	annexin A9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-163713399-4	chr2	163713287	163713487	+	975.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039390, intron 3 of 4)	intron (NM_001039390, intron 3 of 4)	19350.0	NM_011106	18769.0	Mm.10091	NM_011106	ENSMUSG00000035268	Pkig	PKIgamma	protein kinase inhibitor, gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-60830908-2	chr10	60830808	60831008	+	841.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029770, intron 1 of 16)	CpG	673.0	NM_029770	107449.0	Mm.290433	NM_029770	ENSMUSG00000020099	Unc5b	6330415E02Rik|A630020F16|D10Bwg0792e|Unc5h2	unc-5 netrin receptor B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43452457-2	chr4	43452357	43452557	+	799.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_007654, exon 5 of 9)	exon (NM_007654, exon 5 of 9)	2169.0	NM_001110320	12517.0	Mm.188157	NM_007654	ENSMUSG00000028459	Cd72	CD72c|Ly-19|Ly-32|Ly-m19|Lyb-2	CD72 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-14922195-4	chr4	14922096	14922296	+	929.716675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7712.0	NM_001356579	100038514.0	Mm.331495	NM_001243100		Gm11837	-	predicted gene 11837	protein-coding	2.6312902683853	2.94165813252975	2.84582516941976	2.23617537504827	2.37663466490374	2.39162131969451	2.5696044289965	2.10045147355643	-0.691934050804114	0.363248105620087	0.858855050154424
Merged-chr16-87688250-2	chr16	87688150	87688350	+	617.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10704.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128710142-2	chr2	128710043	128710243	+	806.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 1 of 18)	intron (NM_008587, intron 1 of 18)	11228.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	1.77703824375023	1.67257237305463	1.19604103208412	2.09831274381138	1.66443962736461	1.85723331391594	2.37253215324111	2.37998608981324	1.04251141172754	0.30685288053989	0.807386791720106
Merged-chr18-69595930-4	chr18	69595823	69596023	+	990.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 8 of 19)	intron (NM_001361128, intron 8 of 19)	249763.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-138244116-4	chr1	138244030	138244230	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-29608.0	NM_177397	338375.0	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-4195058-2	chr8	4194958	4195158	+	580.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346730, intron 10 of 19)	B1_Mur3|SINE|Alu	22254.0	NM_207203	73072.0	Mm.477379	NM_207203	ENSMUSG00000064125	Prr36	-	proline rich 36	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-68193056-3	chr10	68192878	68193078	+	981.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023598, intron 3 of 9)	intron (NM_023598, intron 3 of 9)	85748.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-46137987-1	chr4	46137887	46138087	+	550.0	f0_balb.idr	promoter-TSS (NM_001033201)	promoter-TSS (NM_001033201)	488.0	NM_173033	272027.0	Mm.249594	NM_173033	ENSMUSG00000035495	Tstd2	3010020C06	thiosulfate sulfurtransferase (rhodanese)-like domain containing 2	protein-coding	-1.50811478453619	-0.99851579554048	-1.48484165847197	-1.49312904261012	-1.50577282675516	-1.47256636097272	-1.48255773576353	-1.49164560481169	-2.24133836997777	0.518237887813808	1
Merged-chr14-70815858-4	chr14	70815753	70815953	+	787.799988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37080.0	NR_045939	73648.0	Mm.410851	NR_045939	ENSMUSG00000099528	2410012E07Rik	-	RIKEN cDNA 2410012E07 gene	ncRNA	3.39110774117588	3.72156989217409	2.66633551758557	3.13185522587026	3.63438913280445	1.71017131511318	2.8227865634936	3.38620917910255	-0.32243517247638	0.64991203928304	0.985422869512088
Merged-chr4-133814191-4	chr4	133814084	133814284	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	60547.0	NM_001285506	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-59559742-4	chr16	59559624	59559824	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3972.0	NM_174848	224273.0	Mm.246424	NM_174848	ENSMUSG00000022723	Crybg3	5031404N19|AU022790|Gm9581	beta-gamma crystallin domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-93497449-3	chr2	93497348	93497548	+	702.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr	Intergenic	Intergenic	-34498.0	NM_001136055	12521.0	Mm.4261	NM_007656	ENSMUSG00000027215	Cd82	AA682076|AL023070|C33|IA4|Kai1|Tspan27	CD82 antigen	protein-coding	1.93773875549706	1.9391512267321	2.10247121502778	1.36993600872375	1.48741667836406	1.44473735384467	2.0104646300201	2.14804017864681	-0.149567474483651	0.884331624302219	0.998431161219273
Merged-chr4-99191866-4	chr4	99191809	99192009	+	891.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2025.0	NM_175029	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19667640-4	chr7	19667536	19667736	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2606.0	NM_019649	56457.0	Mm.290960	NM_019649	ENSMUSG00000002981	Clptm1	HS9|N14	cleft lip and palate associated transmembrane protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-47553859-4	chr8	47553766	47553966	+	849.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	20221.0	NM_203507	192174.0	Mm.273081	NM_203507	ENSMUSG00000031568	Rwdd4a	BC016198|Gm1942|Rwdd4	RWD domain containing 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-58546829-1	chr4	58546729	58546929	+	625.0	f0_c57.idr	intron (NM_010336, intron 1 of 3)	intron (NM_010336, intron 1 of 3)	6464.0	NM_172989	14745.0	Mm.4772	NM_010336	ENSMUSG00000038668	Lpar1	AI326300|Edg2|Gpcr26|Kdt2|lpA1|vzg-1	lysophosphatidic acid receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-123343392-1	chr4	123343292	123343492	+	673.5	f0_balb.idr	promoter-TSS (NM_001256019)	promoter-TSS (NM_001256019)	-140.0	NM_007558	12163.0	Mm.439749	NM_007558	ENSMUSG00000032726	Bmp8a	Bmp7r1|OP-2|OP2	bone morphogenetic protein 8a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-125430254-2	chr1	125430154	125430354	+	583.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205386, intron 2 of 12)	ID_B1|SINE|B4	5473.0	NM_001205386	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-121430435-2	chr1	121430278	121430478	+	972.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001025156)	promoter-TSS (NM_001025156)	-689.0	NM_001025156	70829.0	Mm.25788	NM_027567	ENSMUSG00000026339	Ccdc93	4633402D15Rik|9230102M16Rik	coiled-coil domain containing 93	protein-coding	1.89819685078981	2.35650670486505	1.51497612109067	2.109365236139	1.41137886438656	1.10130211099279	2.37702832579069	1.05527747737859	-1.0208624995408	0.375173773271737	0.868268761943246
Merged-chr4-126405264-4	chr4	126405156	126405356	+	827.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153402, intron 3 of 18)	intron (NM_153402, intron 3 of 18)	24286.0	NM_153402	214150.0	Mm.440915	NM_153402	ENSMUSG00000028842	Ago3	AW048688|C130014L07Rik|Eif2c3	argonaute RISC catalytic subunit 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-33400184-4	chr14	33400081	33400281	+	997.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310452, intron 4 of 10)	MLT1C|LTR|ERVL-MaLR	10843.0	NM_001310452	26419.0	Mm.21495	NM_016700	ENSMUSG00000021936	Mapk8	AI849689|JNK|JNK1|Prkm8|SAPK1	mitogen-activated protein kinase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-35100536-3	chr4	35100404	35100604	+	922.805542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178061, intron 1 of 3)	intron (NM_178061, intron 1 of 3)	-51551.0	NM_199157	387510.0	Mm.386929	NM_199157	ENSMUSG00000042993	Ifnk	-	interferon kappa	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-163719424-4	chr2	163719324	163719524	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039390, intron 3 of 4)	intron (NM_001039390, intron 3 of 4)	25387.0	NM_011106	18769.0	Mm.10091	NM_011106	ENSMUSG00000035268	Pkig	PKIgamma	protein kinase inhibitor, gamma	protein-coding	4.06677331253087	4.30005136817132	4.67902742892946	3.84137046525885	4.24716657905371	5.055260972719	4.7118237294505	4.00157398683031	0.390474760482066	0.356940040173488	0.853942173366938
Merged-chr8-14884520-4	chr8	14884417	14884617	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4019.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-59624450-3	chr11	59624353	59624553	+	925.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	11487.0	NM_001011740	257886.0	Mm.457883	NM_001011740	ENSMUSG00000044061	Olfr225	MOR256-51	olfactory receptor 225	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-24077494-4	chr5	24077405	24077605	+	797.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23085.0	NM_026448	52323.0	Mm.273768	NM_026448	ENSMUSG00000028986	Klhl7	2700038B03Rik|D5Ertd363e|SBBI26	kelch-like 7	protein-coding	3.96811851313284	4.13173944754309	3.65145804241126	4.06373875477386	3.22840889555043	4.16008202782491	3.40948369450382	3.56766366236103	-0.482277020350983	0.325459010013998	0.827782420413875
Merged-chr3-84259421-2	chr3	84259321	84259521	+	585.5	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001271727, exon 1 of 12)	5' UTR (NM_001271727, exon 1 of 12)	358.0	NM_001271727	80890.0	Mm.44876	NM_030706	ENSMUSG00000027993	Trim2	mKIAA0517|narf	tripartite motif-containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-120616125-2	chr5	120616025	120616225	+	606.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028041, intron 1 of 19)	B3|SINE|B2	2995.0	NM_028041	71990.0	Mm.24495	NM_028041	ENSMUSG00000029599	Ddx54	2410015A15Rik|AI414901|DP97	DEAD (Asp-Glu-Ala-Asp) box polypeptide 54	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81295887-2	chr10	81295787	81295987	+	880.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001293647, intron 1 of 17)	intron (NM_001293647, intron 1 of 17)	2924.0	NM_001146687	18717.0	Mm.24222	NM_008844	ENSMUSG00000034902	Pip5k1c	AI115456|AI835305|Pip5kIgamma	phosphatidylinositol-4-phosphate 5-kinase, type 1 gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114684751-4	chr11	114684651	114684851	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053273, intron 1 of 13)	intron (NM_053273, intron 1 of 13)	9283.0	NM_053273	117160.0	Mm.271934	NM_053273	ENSMUSG00000034714	Ttyh2	1110001A03Rik	tweety family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-79446408-4	chr15	79446290	79446490	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4247.0	NM_001359863	27373.0	Mm.30199	NM_013767	ENSMUSG00000022433	Csnk1e	AI426939|AI551861|AW457082|CK1epsilon|CKIe|KC1epsilon|tau	casein kinase 1, epsilon	protein-coding	4.16407680014474	4.16981262612362	3.5458875020621	4.28028182086376	3.58791285178401	3.01281866673376	3.48380619409768	3.3750140804269	-0.994698252673467	0.0448979131362733	0.304675080114064
Merged-chr11-103100560-2	chr11	103100460	103100660	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_152813, intron 1 of 14)	intron (NM_152813, intron 1 of 14)	1098.0	NM_152813	72469.0	Mm.264743	NM_152813	ENSMUSG00000020937	Plcd3	2610205J15Rik|mKIAA1964	phospholipase C, delta 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132824164-4	chr4	132824069	132824269	+	940.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18965.0	NM_001355198	100336.0	Mm.105230	NM_146154	ENSMUSG00000028882	Ppp1r8	6330548N22Rik|AU044684|NIPP1	protein phosphatase 1, regulatory (inhibitor) subunit 8	protein-coding	3.35164403560327	3.86103286026566	2.96766060319928	2.26390189785826	2.29627095155199	3.52261318665209	1.7306451070364	1.38261008531786	-1.23553316620853	0.14922580643501	0.600780768615322
Merged-chr10-4612082-3	chr10	4611997	4612197	+	955.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_126357, exon 1 of 8)	non-coding (NR_126357, exon 1 of 8)	108.0	NM_007956	13982.0	Mm.9213	NM_007956	ENSMUSG00000019768	Esr1	ER|ER-alpha|ERa|ERalpha|ESR|Estr|Estra|Nr3a1	estrogen receptor 1 (alpha)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-43546715-4	chr6	43546623	43546823	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013861, intron 4 of 8)	intron (NM_013861, intron 4 of 8)	104294.0	NR_045988	319812.0	Mm.446393	NR_045988		9430018G01Rik	-	RIKEN cDNA 9430018G01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-110654157-4	chr9	110654064	110654264	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183276)	promoter-TSS (NM_183276)	-3.0	NM_183276	235627.0	Mm.335481	NM_183276	ENSMUSG00000056724	Nbeal2	1110014F23Rik|BC042396|mKIAA0540	neurobeachin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-110961819-3	chr11	110961707	110961907	+	633.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6226.0	NM_010604	16517.0	Mm.30176	NM_010604	ENSMUSG00000051497	Kcnj16	6430410F18Rik|AI132396|Kir5.1	potassium inwardly-rectifying channel, subfamily J, member 16	protein-coding	-0.377472903646679	-0.367101443234863	-0.370523850511013	-0.0958873229413384	-0.24455544525978	-0.366326697763535	0.0553177179077958	-0.0917367455078811	1.58598689136132	0.51063500426415	1
Merged-chr11-94340395-2	chr11	94340280	94340480	+	666.166626	f0_balb.idr|f0_c57.idr	TTS (NM_146024)	TTS (NM_146024)	12379.0	NM_146024	71452.0	Mm.141054	NM_027799	ENSMUSG00000020864	Ankrd40	1110011C06Rik|5530600A18Rik|Gcap15	ankyrin repeat domain 40	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-34671925-2	chr2	34671825	34672025	+	584.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	83307.0	NM_001356441	66691.0	Mm.156452	NM_025709	ENSMUSG00000026867	Gapvd1	2010005B09Rik|4432404J10Rik|AW108497|Gapex-5|RAP6|RME-6|mKIAA1521	GTPase activating protein and VPS9 domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-94814523-3	chr3	94814416	94814616	+	928.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23051.0	NM_001165948	229584.0	Mm.274787	NM_172683	ENSMUSG00000038902	Pogz	9530006B08Rik	pogo transposable element with ZNF domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141248042-1	chr4	141247942	141248142	+	552.0	f0_balb.idr	exon (NM_172520, exon 7 of 17)	exon (NM_172520, exon 7 of 17)	5158.0	NM_172520	213649.0	Mm.134460	NM_172520	ENSMUSG00000028919	Arhgef19	6030432F23|6430573B13Rik|WGEF	Rho guanine nucleotide exchange factor (GEF) 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-143488810-2	chr5	143488710	143488910	+	753.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144915, intron 8 of 14)	intron (NM_144915, intron 8 of 14)	24317.0	NM_144915	231871.0	Mm.469963	NM_144915	ENSMUSG00000039206	Daglb	E330036I19Rik	diacylglycerol lipase, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-80498233-2	chr17	80498133	80498333	+	577.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17780.0	NM_009231	20662.0	Mm.60975	NM_009231	ENSMUSG00000024241	Sos1	4430401P03Rik|9630010N06|AI449023	SOS Ras/Rac guanine nucleotide exchange factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-116992137-2	chr8	116992037	116992237	+	702.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_026572, intron 1 of 4)	MIRb|SINE|MIR	1312.0	NM_026572	68133.0	Mm.258462	NM_026572	ENSMUSG00000034424	Gcsh	1100001L02Rik|5730591C18Rik	glycine cleavage system protein H (aminomethyl carrier)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-89323015-2	chr6	89322915	89323115	+	739.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_008881, intron 27 of 31)	intron (NM_008881, intron 27 of 31)	-37290.0	NR_131021	75131.0	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	Gm44205	RIKEN cDNA 4930512J16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-43266610-4	chr6	43266500	43266700	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133674, intron 1 of 14)	intron (NM_133674, intron 1 of 14)	956.0	NM_133674	54324.0	Mm.320978	NM_133674	ENSMUSG00000033542	Arhgef5	2210412D05Rik|AA717842|AW495314|Tim1	Rho guanine nucleotide exchange factor (GEF) 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21174466-2	chr9	21174366	21174566	+	742.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_183408, intron 1 of 14)	MT2B1|LTR|ERVL	8752.0	NM_183408	18577.0	Mm.191749	NM_019798	ENSMUSG00000032177	Pde4a	D9Ertd60e|Dpde2	phosphodiesterase 4A, cAMP specific	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-26138650-2	chr11	26138551	26138751	+	834.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_027973, intron 1 of 5)	intron (NR_027973, intron 1 of 5)	-63589.0	NR_105791	102466154.0		NR_105791	ENSMUSG00000099015	Mir6372	Gm27358|mmu-mir-6372	microRNA 6372	ncRNA	0.703561953586887	0.0974821854267678	0.0920503405892184	0.0878645637545448	0.636594341323947	0.0987076768422013	0.415939485357322	0.250162353071447	0.57045157834275	0.782645685545596	1
Merged-chr2-166807770-2	chr2	166807670	166807870	+	621.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085495, intron 1 of 38)	B4A|SINE|B4	2189.0	NM_001085495	99371.0	Mm.297192	NM_001085495	ENSMUSG00000074582	Arfgef2	AI463430|AW493672|BIG2|E230011G24Rik	ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71670723-4	chr8	71670606	71670806	+	901.715942	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029873, intron 1 of 41)	intron (NM_001029873, intron 1 of 41)	1051.0	NM_001029873	382018.0	Mm.334606	NM_001029873	ENSMUSG00000034799	Unc13a	2410078G03Rik|Munc13-1	unc-13 homolog A (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-5763008-2	chr11	5762908	5763108	+	585.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361588)	promoter-TSS (NM_001361588)	-632.0	NM_001361589	72046.0	Mm.271657	NM_178623	ENSMUSG00000049680	Urgcp	2010005J08Rik|9130001I21Rik|AW060359|Urg4|mKIAA1507	upregulator of cell proliferation	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-75296470-2	chr3	75296370	75296570	+	706.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26392.0	NM_026460	67931.0	Mm.259446	NM_026460	ENSMUSG00000034139	Serpini2	Spi14	serine (or cysteine) peptidase inhibitor, clade I, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-138237440-4	chr1	138237352	138237552	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA6|LINE|L1	-36286.0	NM_177397	338375.0	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-140846969-4	chr2	140846878	140847078	+	943.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013802, intron 4 of 18)	intron (NM_001013802, intron 4 of 18)	-175502.0	NM_178382	71436.0	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-105047110-2	chr13	105047010	105047210	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029879, intron 2 of 5)	intron (NM_029879, intron 2 of 5)	7820.0	NM_029879	52882.0	Mm.100348	NM_029879	ENSMUSG00000021719	Rgs7bp	A930030I01Rik|AI842293|D13Bwg1146e|R7bp	regulator of G-protein signalling 7 binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-50461000-2	chr9	50460900	50461100	+	648.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33525.0	NM_029639	76509.0	Mm.29959	NM_029639	ENSMUSG00000032068	Plet1	0610037B23Rik|1600029D21Rik|AA407923|AU043048	placenta expressed transcript 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-3185962-4	chr11	3185857	3186057	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030207, intron 4 of 32)	B1_Mur4|SINE|Alu	7506.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-43471436-4	chr1	43471337	43471537	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010879, intron 1 of 4)	intron (NM_010879, intron 1 of 4)	25686.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-15214474-4	chr18	15214383	15214583	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63037.0	NM_134112	106931.0	Mm.329299	NM_134112	ENSMUSG00000036225	Kctd1	4933402K10Rik|AI661543|AW553000	potassium channel tetramerisation domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139370262-4	chr5	139370186	139370386	+	666.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029768)	promoter-TSS (NR_029768)	-541.0	NR_029768	723898.0		NR_029768	ENSMUSG00000065593	Mir339	Mirn339|mir-339|mmu-mir-339	microRNA 339	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-59234767-2	chr2	59234667	59234867	+	869.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 2 of 20)	intron (NM_175464, intron 2 of 20)	73917.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-27029660-2	chr8	27029560	27029760	+	637.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_153592, exon 6 of 12)	exon (NM_153592, exon 6 of 12)	5861.0	NM_153592	244373.0	Mm.277699	NM_153592	ENSMUSG00000031483	Erlin2	BC036333|C87251|Spfh2	ER lipid raft associated 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-79112069-2	chr11	79111969	79112169	+	817.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013571, intron 1 of 17)	intron (NM_013571, intron 1 of 17)	34404.0	NM_013571	16706.0	Mm.4745	NM_013571	ENSMUSG00000018334	Ksr1	AW492498|B-KSR1|D11Bhm183e|D11Bhm184e|Ksr|RSU2|hb|mKSR1	kinase suppressor of ras 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-34238145-4	chr15	34238039	34238239	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_033521, exon 1 of 7)	5' UTR (NM_033521, exon 1 of 7)	113.0	NM_033521	114128.0	Mm.197518	NM_033521	ENSMUSG00000022257	Laptm4b	C330023P13Rik|LAPTM4beta	lysosomal-associated protein transmembrane 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-62506387-4	chr10	62506271	62506471	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358965, intron 2 of 3)	intron (NM_001358965, intron 2 of 3)	1386.0	NM_011157	19073.0	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-75969146-4	chr15	75969035	75969235	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347040)	promoter-TSS (NM_001347040)	12.0	NM_001081065	69020.0	Mm.294295	NM_001081065	ENSMUSG00000034429	Zfp707	1500031N24Rik|AI451708|AW495315	zinc finger protein 707	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-21877581-1	chr14	21877481	21877681	+	659.0	f0_balb.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-28671.0	NM_026965	69156.0	Mm.11827	NM_026965	ENSMUSG00000021773	Comtd1	1810030M08Rik|MT773	catechol-O-methyltransferase domain containing 1	protein-coding	0.855569979044542	0.999542333276025	0.437576686191343	0.70789498691992	0.671651191686489	0.44456543541072	0.60035824681652	0.712337481712528	-1.0439358354423	0.524153802097946	1
Merged-chr2-29619615-4	chr2	29619472	29619672	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039087)	promoter-TSS (NM_001039087)	-148.0	NM_054050	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-17698031-2	chr13	17697931	17698131	+	636.75	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_025479, exon 2 of 2)	3' UTR (NM_025479, exon 2 of 2)	2618.0	NM_025479	66308.0	Mm.291109	NM_025479	ENSMUSG00000012429	Mplkip	2810021B07Rik|C330007M08Rik|Ttdn1	M-phase specific PLK1 intereacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-30750671-4	chr13	30750587	30750787	+	940.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013674, exon 2 of 9)	exon (NM_013674, exon 2 of 9)	1454.0	NM_013674	16364.0	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-89285424-2	chr6	89285324	89285524	+	566.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_131021, exon 1 of 4)	non-coding (NR_131021, exon 1 of 4)	301.0	NR_131021	75131.0	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	Gm44205	RIKEN cDNA 4930512J16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-55601109-2	chr16	55601009	55601209	+	674.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	106378.0	NR_039578	100628589.0		NR_039578	ENSMUSG00000093292	Mir5118	mmu-mir-5118|mu-mir-5118	microRNA 5118	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118691344-3	chr9	118691255	118691455	+	654.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 14 of 27)	intron (NM_133721, intron 14 of 27)	-20337.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-13676691-2	chr17	13676591	13676791	+	939.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-83850.0	NR_151731	17356.0	Mm.59167	NM_010806	ENSMUSG00000068036	Afdn	5033403D15Rik|AF6|Af-6|Afadin|Gm314|I-afadin|Mllt4|S-afadin	afadin, adherens junction formation factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-129237039-4	chr6	129236946	129237146	+	974.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040268, intron 2 of 3)	MTE2a|LTR|ERVL-MaLR	999.0	NR_040265	76432.0	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85680188-2	chr12	85680088	85680288	+	722.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(GGGA)n|Simple_repeat|Simple_repeat	-6532.0	NM_016767	53314.0	Mm.6672	NM_016767	ENSMUSG00000034266	Batf	B-ATF|SFA-2	basic leucine zipper transcription factor, ATF-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127746885-2	chr7	127746785	127746985	+	892.375	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_172748, exon 1 of 11)	5' UTR (NM_172748, exon 1 of 11)	110.0	NM_172748	233902.0	Mm.259353	NM_172748	ENSMUSG00000030811	Fbxl19	6030430O11|BC059812|Fbl19	F-box and leucine-rich repeat protein 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-9187963-3	chr5	9187856	9188056	+	701.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR12B|LTR|ERVK	-26180.0	NR_152861	23857.0	Mm.22480	NM_011806	ENSMUSG00000042508	Dmtf1	Dimp|Dmp1	cyclin D binding myb-like transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-48260951-3	chr13	48260854	48261054	+	637.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031166)	promoter-TSS (NM_031166)	-473.0	NM_031166	15904.0	Mm.458006	NM_031166	ENSMUSG00000021379	Id4	Idb4|bHLHb27	inhibitor of DNA binding 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-61023558-2	chr9	61023458	61023658	+	696.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	6489.0	NR_040767	330956.0	Mm.207985	NR_040767	ENSMUSG00000111290	Gm5122	A430102L10	predicted gene 5122	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-101328452-2	chr4	101328352	101328552	+	710.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18575.0	NR_029537	387143.0		NR_029537	ENSMUSG00000065451	Mir101a	Mirn101|Mirn101a|miR-101|mir-101a	microRNA 101a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-108654757-4	chr3	108654682	108654882	+	859.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177771, intron 2 of 12)	intron (NM_001177771, intron 2 of 12)	842.0	NM_001177770	229725.0	Mm.214545	NM_145543	ENSMUSG00000027884	Clcc1	Mclc	chloride channel CLIC-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69582583-2	chr11	69582483	69582683	+	834.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001127233, intron 1 of 10)	intron (NM_001127233, intron 1 of 10)	2224.0	NM_001127233	22059.0	Mm.222	NM_011640	ENSMUSG00000059552	Trp53	Tp53|bbl|bfy|bhy|p44|p53	transformation related protein 53	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97317022-2	chr11	97316922	97317122	+	857.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025927, intron 2 of 7)	intron (NM_025927, intron 2 of 7)	1306.0	NM_025927	67036.0	Mm.5381	NM_025927	ENSMUSG00000018882	Mrpl45	2600005P05Rik|AU043542|R75241	mitochondrial ribosomal protein L45	protein-coding	0.207773018949327	0.233477401170565	0.9666004783841	0.218664122860295	0.209403337037875	0.923298216300488	0.980130883034409	0.219801104946079	0.9697088958871	0.634275769863237	1
Merged-chr5-149690043-3	chr5	149689934	149690134	+	963.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081204, intron 1 of 14)	intron (NM_001081204, intron 1 of 14)	11777.0	NM_001081204	381694.0	Mm.45060	NM_001081204	ENSMUSG00000051950	B3glct	B3galtl|Gm1057	beta-3-glucosyltransferase	protein-coding	4.14419089267197	6.01386800903789	4.7197225101527	5.15397830210132	5.93726600413173	6.34591183124478	5.41922408625156	6.24609010943762	0.973419805939134	0.0071910356619057	0.0861631616560033
Merged-chr2-3511661-2	chr2	3511561	3511761	+	672.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_149715, intron 1 of 4)	intron (NR_149715, intron 1 of 4)	1153.0	NR_103465	50497.0	Mm.89341	NM_015765	ENSMUSG00000051396	Hspa14	70kDa|HSP70L1|Hsp70-4|NST-1|hsr.1	heat shock protein 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-82903202-4	chr18	82903127	82903327	+	813.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-7652.0	NM_183033	329003.0	Mm.326526	NM_183033	ENSMUSG00000058881	Zfp516	C330029B10Rik|D230016L03|Zfp26l|Znf516|mKIAA0222	zinc finger protein 516	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-25359803-4	chr10	25359722	25359922	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358755)	promoter-TSS (NM_001358755)	24.0	NM_001358751	13822.0	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-80937893-3	chr12	80937788	80937988	+	760.133362	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	7511.0	NR_045057	100504661.0	Mm.442322	NR_045057	ENSMUSG00000112880	Gm20337	-	predicted gene, 20337	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83735470-2	chr11	83735370	83735570	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11470.0	NM_183249	66107.0	Mm.902	NM_183249	ENSMUSG00000051748	Wfdc21	1100001G20Rik|Wdnm1-like	WAP four-disulfide core domain 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-77770422-2	chr15	77770322	77770522	+	669.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_022410, intron 27 of 40)	B1_Mur2|SINE|Alu	-13412.0	NM_001357895	239552.0	Mm.125650	NM_001081970	ENSMUSG00000056656	Apol8	9830006J20Rik|APOL-II|Apol2	apolipoprotein L 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-69238672-3	chr3	69238582	69238782	+	721.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16263.0	NM_027843	71619.0	Mm.98122	NM_027843	ENSMUSG00000098207	Arl14	9130014L17Rik|Arf7	ADP-ribosylation factor-like 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-156065488-8	chr2	156065395	156065595	+	981.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_139151, exon 1 of 12)	exon (NM_139151, exon 1 of 12)	282.0	NM_139151	245865.0	Mm.330713	NM_139151	ENSMUSG00000038180	Spag4	1700041K21Rik|MNCb-0953|Sun4|mKIAA4118	sperm associated antigen 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3423892-4	chr12	3423790	3423990	+	798.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030694, intron 1 of 2)	RMER17C2|LTR|ERVK	2857.0	NR_030694	100043040.0	Mm.415417	NR_030694	ENSMUSG00000071456	1110002L01Rik	-	RIKEN cDNA 1110002L01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-10297359-4	chr3	10297349	10297549	+	912.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029310, intron 1 of 5)	intron (NM_029310, intron 1 of 5)	3734.0	NM_001357159	75497.0	Mm.47052	NM_029310	ENSMUSG00000027530	Fabp12	1700008G05Rik	fatty acid binding protein 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167926253-4	chr2	167926156	167926356	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1K|LTR|ERVL-MaLR	-6071.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-137881192-4	chr2	137881103	137881303	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-375381.0	NM_001025431	228662.0	Mm.153405	NM_145534	ENSMUSG00000062098	Btbd3	mKIAA0952	BTB (POZ) domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127511993-4	chr7	127511900	127512100	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001304266)	promoter-TSS (NM_001304266)	17.0	NM_001304266	100043597.0	Mm.428042	NM_175144	ENSMUSG00000053877	Srcap	B930091H02Rik|D030022P06Rik|F630004O05Rik	Snf2-related CREBBP activator protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-82318018-2	chr15	82317930	82318130	+	798.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR25B|LTR|ERVK	19046.0	NM_029066	74716.0	Mm.159315	NM_029066	ENSMUSG00000022455	Wbp2nl	4930521I23Rik|PAWP	WBP2 N-terminal like	protein-coding	-0.823387085163759	-0.812210912524612	-0.81612413484032	-0.818850421737679	-0.822711377263913	-0.601367003965401	-0.815345674044056	-0.0548556764969798	3.27980684583702	0.2576242957037	1
Merged-chr15-28019840-2	chr15	28019740	28019940	+	551.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081302, intron 1 of 56)	intron (NM_001081302, intron 1 of 56)	6008.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-88069219-2	chr15	88069119	88069319	+	641.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-245655.0	NR_045281	328579.0	Mm.146839	NR_045281	ENSMUSG00000116331	B230214G05Rik	B230214G05	RIKEN cDNA B230214G05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-146578233-3	chr6	146578100	146578300	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138757)	promoter-TSS (NM_138757)	289.0	NM_026218	67529.0	Mm.333499	NM_026218	ENSMUSG00000040242	Fgfr1op2	1500031J01Rik	FGFR1 oncogene partner 2	protein-coding	3.0431776679186	3.65547732665928	3.85414425023981	3.44249218473234	3.06854826156263	3.00347636231827	2.76936584314155	3.1324329805115	-0.866518505716383	0.135946758754768	0.57581403090364
Merged-chr7-138824559-2	chr7	138824459	138824659	+	591.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21708.0	NM_001045483	69546.0	Mm.31598	NM_027115	ENSMUSG00000041775	Mapk1ip1	2310009E07Rik|AU043776|MISS	mitogen-activated protein kinase 1 interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-46646164-4	chr17	46646058	46646258	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029091)	promoter-TSS (NM_029091)	-63.0	NM_001316742	27398.0	Mm.391007	NM_025302	ENSMUSG00000002767	Mrpl2	CGI-22|L2mt|MRP-L14|MRP-L2|Rpml14	mitochondrial ribosomal protein L2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-148458606-2	chr6	148458506	148458706	+	620.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14254.0	NM_001347518	387314.0	Mm.137858	NM_198967	ENSMUSG00000030306	Tmtc1	Arg99|BC023818	transmembrane and tetratricopeptide repeat containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100527238-1	chr7	100527138	100527338	+	626.0	f0_balb.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-9862.0	NM_183270	68185.0	Mm.228995	NM_183270	ENSMUSG00000044881	Coa4	5330414O08Rik|AI115477|AW047259|Chchd8|E2ig2	cytochrome c oxidase assembly factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-25441014-1	chr17	25440914	25441114	+	551.0	f1_balb.idr	Intergenic	Intergenic	-7231.0	NM_001163691	58226.0	Mm.268378	NM_021415	ENSMUSG00000024112	Cacna1h	Cav3.2|MNCb-1209|alpha13.2	calcium channel, voltage-dependent, T type, alpha 1H subunit	protein-coding	0.821721472050351	0.405119423909691	0.394488263635778	0.88926489218397	0.83196845368381	0.407492612348783	1.62463633483156	0.387627444657093	1.30761339909513	0.454165840778194	0.919120493489568
Merged-chr18-65429690-2	chr18	65429590	65429790	+	561.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_105742, intron 3 of 6)	intron (NR_105742, intron 3 of 6)	-1307.0	NM_172833	240354.0	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-72181443-1	chr16	72181343	72181543	+	564.0	f1_c57bl6.idr	Intergenic	Lx3_Mus|LINE|L1	52884.0	NR_131116	319533.0	Mm.373754	NR_131115		8030451O07Rik	-	RIKEN cDNA 8030451O07 gene	ncRNA	-1.3681463318974	-1.33624156493372	-1.34650167276047	-0.80669348975676	-1.36769697821496	-1.33401815676661	-1.34417900924365	-1.3534210303531	-2.3580830592467	0.49586638340111	1
Merged-chr18-67448379-2	chr18	67448279	67448479	+	825.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_027130, intron 1 of 16)	intron (NM_027130, intron 1 of 16)	757.0	NM_027130	69597.0	Mm.426052	NM_027130	ENSMUSG00000024527	Afg3l2	2310036I02Rik|AW260507|Emv66|par	AFG3-like AAA ATPase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-9656765-4	chr3	9656662	9656862	+	948.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46677.0	NM_133218	170753.0	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-68566612-2	chr11	68566512	68566712	+	556.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10426.0	NM_146004	215723.0	Mm.131205	NM_146004	ENSMUSG00000048329	Mfsd6l	-	major facilitator superfamily domain containing 6-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114720859-2	chr11	114720759	114720959	+	830.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_053273, exon 14 of 14)	3' UTR (NM_053273, exon 14 of 14)	-6553.0	NM_001034878	432611.0	Mm.212764	NM_001034878	ENSMUSG00000034706	Dnaic2	C030015H18Rik|Dnai2|Gm728|b2b3405Clo	dynein, axonemal, intermediate chain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55778099-4	chr14	55778012	55778212	+	979.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080435, intron 10 of 25)	intron (NM_080435, intron 10 of 25)	5960.0	NM_080435	104110.0	Mm.287010	NM_080435	ENSMUSG00000022220	Adcy4	mKIAA4004	adenylate cyclase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-52468548-4	chr3	52468421	52468621	+	947.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	-48443.0	NR_153344	102631981.0	Mm.394225	NR_153344		Gm30173	-	predicted gene, 30173	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-16658906-3	chr1	16658829	16659029	+	662.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_037998, exon 1 of 4)	non-coding (NR_037998, exon 1 of 4)	1377.0	NR_037998	329101.0	Mm.406049	NR_037998	ENSMUSG00000097744	D030040B21Rik	D030040B21	RIKEN cDNA D030040B21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-58235439-2	chr11	58235335	58235535	+	808.0	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	20458.0	NM_019440	54396.0	Mm.458517	NM_019440	ENSMUSG00000069874	Irgm2	AI481100|GTPI|Ifggd2|Iigp2	immunity-related GTPase family M member 2	protein-coding	2.12867789111306	3.28129956258489	2.46777737526569	1.41389701858256	2.14775352650739	2.83497966797467	3.11768985387234	3.41997253935084	0.855320497183224	0.306317913422177	0.806865344318695
Merged-chr16-17721344-4	chr16	17721230	17721430	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285886, intron 1 of 16)	(CACCC)n|Simple_repeat|Simple_repeat	1570.0	NM_001285886	94112.0	Mm.208970	NM_033609	ENSMUSG00000012114	Med15	A230074L19Rik|AW536074|Pcqap|mPcqap	mediator complex subunit 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-39430715-2	chr16	39430615	39430815	+	572.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-241765.0	NR_153800	102640746.0		NR_153800		Gm36742	-	predicted gene, 36742	ncRNA	1.26977299864037	2.6699479363579	1.11451617270668	1.68587624693475	1.61150488366314	2.10586316899807	1.75022130456199	2.27231110668786	0.255741209330177	0.81403112588038	0.998431161219273
Merged-chr11-101083122-2	chr11	101083022	101083222	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001305982, exon 2 of 10)	exon (NM_001305982, exon 2 of 10)	557.0	NR_155015	71743.0	Mm.182271	NM_027896	ENSMUSG00000001755	Coasy	1300003G02Rik|Dpck|Ppat|Ukr1	Coenzyme A synthase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-84823012-2	chr11	84822912	84823112	+	745.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_177564, intron 3 of 6)	intron (NM_177564, intron 3 of 6)	-3497.0	NM_145433	217038.0	Mm.280825	NM_145433	ENSMUSG00000018405	Mrm1	A530065E19Rik	mitochondrial rRNA methyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-46351009-2	chr4	46350909	46351109	+	783.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6815.0	NM_183298	110805.0	Mm.354634	NM_183298	ENSMUSG00000070990	Foxe1	Titf2	forkhead box E1	protein-coding	0.207701448129356	0.0902790683510925	0.617236194133367	0.234106880515493	0.432720542732848	0.0913914986193437	0.0864413335713064	0.484238649444346	-0.121078484279055	0.950691584174595	1
Merged-chr18-61093913-4	chr18	61093815	61094015	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11657.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-120129175-2	chr10	120129075	120129275	+	672.099976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16210.0	NM_080446	117599.0	Mm.214703	NM_080446	ENSMUSG00000020228	Helb	AI447783|D10Ertd664e	helicase (DNA) B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-15493453-4	chr9	15493347	15493547	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359604)	promoter-TSS (NM_001359604)	15.0	NM_001359604	170748.0	Mm.86572	NM_133214	ENSMUSG00000058173	Smco4	Fn5	single-pass membrane protein with coiled-coil domains 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3366873-1	chr12	3366773	3366973	+	546.0	f1_balb.idr	exon (NM_008445, exon 1 of 8)	exon (NM_008445, exon 1 of 8)	1741.0	NM_008445	16570.0	Mm.7688	NM_008445	ENSMUSG00000020668	Kif3c	mKIAA4058	kinesin family member 3C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-155380209-2	chr1	155380109	155380309	+	640.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011273, intron 2 of 14)	MTE2a|LTR|ERVL-MaLR	37235.0	NM_011273	19775.0	Mm.266215	NM_011273	ENSMUSG00000026469	Xpr1	Rmc-1|Rmc1|Sxv|Syg1|XR	xenotropic and polytropic retrovirus receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-39835830-4	chr18	39835678	39835878	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	62281.0	NM_011033	18459.0	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-164950818-2	chr2	164950681	164950881	+	786.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_013599, intron 6 of 12)	intron (NM_013599, intron 6 of 12)	2562.0	NM_013599	17395.0	Mm.4406	NM_013599	ENSMUSG00000017737	Mmp9	AW743869|B/MMP9|Clg4b|Gel B|MMP-9|pro-MMP-9	matrix metallopeptidase 9	protein-coding	3.01494295967537	3.10346260942453	2.26446424205712	2.36576555213493	1.64693831569639	3.42982112814032	3.22108870450908	4.64503856017313	1.40513391815666	0.0675848836970486	0.390097867830591
Merged-chr18-90600729-2	chr18	90600654	90600854	+	723.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20929.0	NM_001362365	108168395.0	Mm.391131	NM_001362365	ENSMUSG00000110277	Gm45871	-	predicted gene 45871	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-74239445-2	chr5	74239345	74239545	+	742.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114660, intron 5 of 8)	intron (NM_001114660, intron 5 of 8)	44119.0	NM_026878	68939.0	Mm.293316	NM_026878	ENSMUSG00000049907	Rasl11b	1190017B18Rik	RAS-like, family 11, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-132316203-4	chr2	132316160	132316360	+	892.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30321.0	NM_001291039	110911.0	Mm.284503	NM_138651	ENSMUSG00000058793	Cds2	5730450N06Rik|5730460C18Rik|AI854580|D2Wsu127e	CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-80071043-4	chr12	80070944	80071144	+	907.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41969.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4628985-3	chr19	4628903	4629103	+	771.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033447, intron 13 of 14)	intron (NM_001033447, intron 13 of 14)	-3386.0	NM_023131	19671.0	Mm.391143	NM_023131	ENSMUSG00000024889	Rce1	D19Ertd283e|D19Ertd98e	Ras converting CAAX endopeptidase 1	protein-coding	3.49232533689938	2.0389891355507	3.88237251472862	2.76136998942919	3.40109319251462	3.20651240442721	3.46037000343227	3.10096773889527	0.105640949580204	0.872248420012462	0.998431161219273
Merged-chr1-155094364-2	chr1	155094264	155094464	+	626.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5272.0	NM_010500	15939.0	Mm.12246	NM_010500	ENSMUSG00000056708	Ier5	-	immediate early response 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-34896965-2	chr6	34896865	34897065	+	918.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013366, intron 6 of 14)	B1_Mus2|SINE|Alu	13866.0	NM_001013366	101240.0	Mm.152120	NM_001013366	ENSMUSG00000058486	Wdr91	9530020G05Rik|AI987683|AU018665	WD repeat domain 91	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-85786501-2	chr11	85786401	85786601	+	700.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_138681, intron 24 of 25)	intron (NM_138681, intron 24 of 25)	-10821.0	NR_046194	78420.0	Mm.488197	NR_046194	ENSMUSG00000085514	Bcas3os2	9530048J24Rik	breast carcinoma amplified sequence 3 opposite strand 2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45448525-2	chr7	45448425	45448625	+	828.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030678, intron 12 of 15)	intron (NM_030678, intron 12 of 15)	11361.0	NM_010240	14325.0	Mm.30357	NM_010240	ENSMUSG00000050708	Ftl1	Ftl|Ftl-1|L-ferritin	ferritin light polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-114651568-4	chr5	114651438	114651638	+	924.636902	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022017, intron 1 of 15)	intron (NM_022017, intron 1 of 15)	6883.0	NM_022017	63873.0	Mm.266450	NM_022017	ENSMUSG00000014158	Trpv4	0610033B08Rik|OTRPC4|Trp12|VR-OAC|VRL-2|VROAC	transient receptor potential cation channel, subfamily V, member 4	protein-coding	-1.18818405238703	-1.1621273909064	-1.17340543805306	-1.18266956177369	-0.508992984534732	-1.15968339104222	-1.17085233538681	-1.18101128805699	2.76775479490304	0.421927342186551	1
Merged-chr16-91881336-2	chr16	91881236	91881436	+	915.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_010587, intron 28 of 38)	intron (NM_010587, intron 28 of 38)	50294.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-174434825-2	chr2	174434725	174434925	+	952.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_022325, intron 2 of 5)	intron (NM_022325, intron 2 of 5)	4214.0	NM_022325	64138.0	Mm.156919	NM_022325	ENSMUSG00000016256	Ctsz	AI787083|AU019819|CTSX|D2Wsu143e	cathepsin Z	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-21093600-2	chr11	21093500	21093700	+	900.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_023324, intron 1 of 6)	intron (NM_023324, intron 1 of 6)	2276.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-40608573-1	chr8	40608473	40608673	+	739.0	f0_c57.idr	intron (NM_001040699, intron 2 of 13)	Lx8|LINE|L1	26219.0	NM_001040699	54384.0	Mm.294871	NM_019433	ENSMUSG00000039431	Mtmr7	-	myotubularin related protein 7	protein-coding	0.842869379374865	-0.264891761375028	-0.0679322909919992	-0.275615243092825	-0.282305632227564	-0.0390309613800743	-0.26958806297846	-0.274793056793982	-3.11859642258314	0.180275328477019	1
Merged-chr5-146819628-7	chr5	146819523	146819723	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13267.0	NM_019647	19933.0	Mm.316592	NM_019647	ENSMUSG00000041453	Rpl21	8430440E03Rik|L21	ribosomal protein L21	protein-coding	3.25290209409176	2.60945535530525	2.51922011833847	2.83050196152134	3.21255477628288	3.58638112957187	3.67017446298203	2.60192321754569	0.831101088810304	0.200450368398816	0.684238776668547
Merged-chr2-73486468-4	chr2	73486359	73486559	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289723)	promoter-TSS (NM_001289723)	-706.0	NM_001289723	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-4677454-4	chr8	4677376	4677576	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	64306.0	NM_145591	233987.0	Mm.102799	NM_145591	ENSMUSG00000058748	Zfp958	-	zinc finger protein 958	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-89252860-2	chr7	89252760	89252960	+	749.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360746, intron 4 of 14)	ORR1E|LTR|ERVL-MaLR	85927.0	NM_028343	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-33794840-4	chr18	33794749	33794949	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_038151)	promoter-TSS (NR_038151)	-43.0	NR_038152	69749.0	Mm.248787	NR_038151	ENSMUSG00000087590	Epb41l4aos	2410004N09Rik|Epb4.1l4aos	erythrocyte membrane protein band 4.1 like 4a, opposite strand	ncRNA	7.00874857600941	6.9929788992575	7.50502845974477	6.81645100011836	7.30541998234004	6.90180590335578	7.12625673853492	7.0766768925255	0.0110465438281923	0.95261271099135	0.998431161219273
Merged-chr8-111243778-4	chr8	111243674	111243874	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009149, intron 1 of 25)	intron (NM_009149, intron 1 of 25)	15428.0	NM_009149	20340.0	Mm.276271	NM_009149	ENSMUSG00000003316	Glg1	AI593353|AW537898|CFR|CFR-1|ESL-1|MG-160|MG160|Selel	golgi apparatus protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-126556941-4	chr4	126556836	126557036	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175554)	promoter-TSS (NM_175554)	-44.0	NM_175554	269582.0	Mm.243962	NM_175554	ENSMUSG00000042489	Clspn	B130025E01|C85083|E130314M08Rik	claspin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85471173-2	chr12	85471073	85471273	+	990.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2717.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-79924755-4	chr7	79924655	79924855	+	977.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_027420)	TTS (NM_027420)	-4115.0	NM_009682	11778.0	Mm.220173	NM_009682	ENSMUSG00000063801	Ap3s2	[s]3B	adaptor-related protein complex 3, sigma 2 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-33932383-2	chr17	33932256	33932456	+	887.125	f1_balb.idr|f1_c57bl6.idr	exon (NM_009059, exon 5 of 18)	exon (NM_009059, exon 5 of 18)	2462.0	NM_009059	19732.0	Mm.43777	NM_009059	ENSMUSG00000041354	Rgl2	KE1.5|Rab2l|Rgt2|Rlf	ral guanine nucleotide dissociation stimulator-like 2	protein-coding	3.0794718217585	1.58219431483456	3.26283285216265	2.33129994504865	2.69824308371682	3.03552631332402	3.78184377471138	2.48877154718971	0.653965673089822	0.403297786482103	0.888785587454204
Merged-chr10-81322651-2	chr10	81322551	81322751	+	983.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_027381, exon 2 of 9)	exon (NM_027381, exon 2 of 9)	1548.0	NM_027381	70312.0	Mm.87628	NM_027381	ENSMUSG00000034889	Cactin	2510012J08Rik	cactin, spliceosome C complex subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-64086002-2	chr17	64085902	64086102	+	922.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037997, intron 16 of 18)	intron (NM_001037997, intron 16 of 18)	-35330.0	NR_130982	68771.0	Mm.443351	NR_130982		1110058D11Rik	-	RIKEN cDNA 1110058D11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-36920633-4	chr16	36920536	36920736	+	932.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030035, intron 14 of 21)	intron (NM_030035, intron 14 of 21)	-14347.0	NM_008225	15163.0	Mm.4091	NM_008225	ENSMUSG00000022831	Hcls1	AW213261|HS1	hematopoietic cell specific Lyn substrate 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-111634792-2	chr13	111634692	111634892	+	780.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	GC_rich|Low_complexity|Low_complexity	-51386.0	NM_172593	218613.0	Mm.31012	NM_172593	ENSMUSG00000032727	Mier3	5730509D14|AU015422|D130064H19Rik	MIER family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5611462-2	chr19	5611362	5611562	+	734.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	-1368.0	NM_178637	81601.0	Mm.228930	NM_178637	ENSMUSG00000024926	Kat5	AI839539|CPLA2|Htatip|Htatip1|PLIP|Tip55|Tip60	K(lysine) acetyltransferase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67316300-2	chr10	67316200	67316400	+	953.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31019.0	NM_001036293	641340.0	Mm.136223	NM_001036293	ENSMUSG00000075000	Nrbf2	NRBF-2	nuclear receptor binding factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-7324531-2	chr13	7324431	7324631	+	553.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-675760.0	NM_001291071	56421.0	Mm.273874	NM_019703	ENSMUSG00000021196	Pfkp	1200015H23Rik|9330125N24Rik|ATP-PFK|PFK-C|PFK-P	phosphofructokinase, platelet	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-40688633-2	chr19	40688533	40688733	+	949.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009848, intron 1 of 9)	B4A|SINE|B4	28863.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-154093553-4	chr1	154093469	154093669	+	996.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-107618.0	NM_001204908	100503355.0	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	Gm10178|Gm203	zinc finger protein 648	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-116670292-6	chr6	116670209	116670409	+	895.7777710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178045, intron 1 of 10)	intron (NM_178045, intron 1 of 10)	3527.0	NM_178045	213391.0	Mm.257931	NM_178045	ENSMUSG00000042129	Rassf4	3830411C14Rik|AD037|AI586137	Ras association (RalGDS/AF-6) domain family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97830684-4	chr11	97830592	97830792	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010688, intron 4 of 6)	intron (NM_010688, intron 4 of 6)	-10088.0	NM_001080935	68127.0	Mm.110270	NM_001080935	ENSMUSG00000050538	B230217C12Rik	AI840637	RIKEN cDNA B230217C12 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81059236-2	chr10	81059136	81059336	+	570.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358550, intron 1 of 11)	B1_Mur2|SINE|Alu	940.0	NM_001358549	52551.0	Mm.30068	NM_024499	ENSMUSG00000004937	Sgta	5330427H01Rik|AI194281|D10Ertd190e|Sgt|Stg	small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-15569388-3	chr16	15569285	15569485	+	838.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159351, intron 2 of 2)	MTD|LTR|ERVL-MaLR	25133.0	NM_001159351	70620.0	Mm.235407	NM_023585	ENSMUSG00000022674	Ube2v2	1110021H13Rik|4632410D19Rik|5730524P06Rik|6820402M05|AI848315|C81524|MMS2	ubiquitin-conjugating enzyme E2 variant 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-5232724-4	chr5	5232633	5232833	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011074, intron 3 of 14)	L1_Mur3|LINE|L1	33335.0	NM_001310448	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	4.69872811421998	3.94924316033305	5.00773282703213	3.70085290541123	4.63127656146682	4.53403270881593	5.00690173811375	4.14712822235824	0.207893772420928	0.62766174344679	0.980912176761026
Merged-chr2-36203593-3	chr2	36203487	36203687	+	639.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26839.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-53821776-2	chr11	53821676	53821876	+	952.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_033332, intron 2 of 3)	intron (NR_033332, intron 2 of 3)	37480.0	NR_033332	622459.0	Mm.479656	NR_033332	ENSMUSG00000081769	Gm12216	602-19-115	predicted gene 12216	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-22136736-3	chr8	22136615	22136815	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011848, intron 11 of 15)	RLTR44B|LTR|ERVK	-11648.0	NM_001347318	330721.0	Mm.113940	NM_177898	ENSMUSG00000037738	Nek5	6530411J22|BB049667	NIMA (never in mitosis gene a)-related expressed kinase 5	protein-coding	1.69572192462876	2.04201868792474	1.63392135203214	3.51809632785687	5.47767717607456	5.27814227946123	5.47286504434238	4.9255515312711	3.92557817134973	4.25891928308973e-05	0.00152989561552427
Merged-chr1-62703415-8	chr1	62703370	62703570	+	970.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010939, exon 1 of 16)	5' UTR (NM_010939, exon 1 of 16)	153.0	NM_001077407	18187.0	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-51925342-2	chr11	51925242	51925442	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42289.0	NM_029976	52626.0	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-32480893-3	chr6	32480771	32480971	+	634.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175750, intron 3 of 31)	intron (NM_175750, intron 3 of 31)	-30270.0	NR_040277	319849.0	Mm.440860	NR_040277	ENSMUSG00000086763	Plxna4os1	B230378P21Rik	plexin A4, opposite strand 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-55032304-2	chr11	55032204	55032404	+	629.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_138556, intron 1 of 24)	intron (NR_138556, intron 1 of 24)	1167.0	NR_138556	11749.0	Mm.265347	NM_013472	ENSMUSG00000018340	Anxa6	AW107198|Anx6|AnxVI|Cabm|Camb	annexin A6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-163401433-4	chr2	163401324	163401524	+	930.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3431.0	NM_001205076	59091.0	Mm.34459	NM_021566	ENSMUSG00000017817	Jph2	1110002E14Rik|JP-2|Jp2	junctophilin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101059236-2	chr7	101059136	101059336	+	712.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER2|DNA|TcMar-Tigger	-47183.0	NM_001302346	18442.0	Mm.3000	NM_008773	ENSMUSG00000032860	P2ry2	P2U1|P2Y2	purinergic receptor P2Y, G-protein coupled 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-103027025-4	chr11	103026917	103027117	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1526.0	NM_008707	18107.0	Mm.10265	NM_008707	ENSMUSG00000020936	Nmt1	AW536594	N-myristoyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-49956050-2	chr11	49955950	49956150	+	740.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347462, intron 1 of 13)	intron (NM_001347462, intron 1 of 13)	53889.0	NM_001347462	74563.0	Mm.258798	NM_029004	ENSMUSG00000020374	Rasgef1c	9130006A14Rik	RasGEF domain family, member 1C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-21030421-2	chr19	21030288	21030488	+	936.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74322.0	NR_126458	75354.0	Mm.243873	NR_126458		4930554I06Rik	-	RIKEN cDNA 4930554I06 gene	ncRNA	-1.26550836321643	-1.23538490674683	-1.24673049817958	-1.25605010478787	-1.26497736998827	-0.580802564315158	-1.24416210496749	-1.25438189966081	2.74054745292391	0.426663645876262	1
Merged-chr11-70130116-3	chr11	70130021	70130221	+	847.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145137)	promoter-TSS (NM_145137)	-236.0	NM_145137	216864.0	Mm.222465	NM_145137	ENSMUSG00000040950	Mgl2	CD301b	macrophage galactose N-acetyl-galactosamine specific lectin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-86583894-4	chr9	86583786	86583986	+	943.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008615, intron 13 of 13)	intron (NM_008615, intron 13 of 13)	11833.0	NM_027100	69519.0	Mm.272517	NM_027100	ENSMUSG00000032417	Rwdd2a	1700030C20Rik|AI848608|Rwdd2	RWD domain containing 2A	protein-coding	3.18712823810552	2.66221641841343	1.95816154878405	2.08231253297888	2.91000945842407	3.32856028060474	2.16031652291826	2.09316147235427	0.290991860508605	0.721819983044014	0.998431161219273
Merged-chr8-70836440-1	chr8	70836340	70836540	+	1000.0	f1_c57bl6.idr	intron (NM_027560, intron 6 of 7)	intron (NM_027560, intron 6 of 7)	3280.0	NM_027560	70807.0	Mm.24215	NM_027560	ENSMUSG00000002910	Arrdc2	4632416I05Rik|Ilad1	arrestin domain containing 2	protein-coding	-0.715674495481617	-1.16652013923994	-1.17730573498469	-1.18616534446147	-1.19112753349182	-0.994476195557721	-1.17486411252161	-1.18457947860102	-1.39554850672784	0.672255398016256	1
Merged-chr10-67185695-4	chr10	67185589	67185789	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001242396)	promoter-TSS (NM_001242396)	-61.0	NM_001242396	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-46463176-2	chr7	46463076	46463276	+	780.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013789, intron 10 of 10)	MIR|SINE|MIR	66708.0	NM_001112739	16502.0	Mm.249386	NM_008421	ENSMUSG00000058975	Kcnc1	C230009H10Rik|KShIIIB|KV4|Kcr2-1|Kv3.1|NGK2|Shaw	potassium voltage gated channel, Shaw-related subfamily, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-42382269-4	chr6	42382201	42382401	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9033.0	NM_023580	13835.0	Mm.133330	NM_023580	ENSMUSG00000029859	Epha1	5730453L17Rik|AL033318|Eph|Esk	Eph receptor A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-20105525-4	chr10	20105414	20105614	+	939.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008580, intron 18 of 29)	intron (NM_008580, intron 18 of 29)	-43406.0	NM_008635	17761.0	Mm.20928	NM_008635	ENSMUSG00000019996	Map7	E-MAP-115|MAP-7|Mtap7|R75000|mshi|mste|ste	microtubule-associated protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-65112140-4	chr13	65112055	65112255	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083901, intron 2 of 12)	intron (NM_001083901, intron 2 of 12)	827.0	NM_001083901	66631.0	Mm.239196	NM_133680	ENSMUSG00000038212	Mfsd14b	5730414C17Rik|AU045608|AW539692|Hiatl1	major facilitator superfamily domain containing 14B	protein-coding	4.10698189373473	4.83470247161431	4.1390934855249	5.24433420684161	4.42491937194812	4.671864885658	5.13949179854897	4.17156894560836	-0.0251860234083359	0.951605385080142	0.998431161219273
Merged-chr8-45875454-4	chr8	45875347	45875547	+	910.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10038.0	NM_016798	53318.0	Mm.282900	NM_016798	ENSMUSG00000031636	Pdlim3	AI463105|ALP|Actn2lp	PDZ and LIM domain 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-37359241-5	chr10	37359230	37359430	+	940.93335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-220404.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3742153-2	chr4	3741993	3742193	+	665.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 2 of 12)	intron (NM_001111096, intron 2 of 12)	27129.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	2.90177318743814	2.10218302032646	2.43009832848729	2.3630687278623	2.26329427402822	2.53161053920107	1.67543765446883	2.13471883239211	-0.700331876823088	0.407560778065499	0.891845785649541
Merged-chr17-24453157-1	chr17	24453057	24453257	+	768.0	f1_balb.idr	intron (NR_125990, intron 1 of 13)	B1_Mus1|SINE|Alu	2235.0	NM_001301784	13560.0	Mm.163132	NM_007893	ENSMUSG00000024137	E4f1	p120E4F|phi-AP3	E4F transcription factor 1	protein-coding	-0.311843183099418	-0.766701022838102	-0.769777834882444	-0.772145876086986	-0.775483384570713	-0.766006314403769	-0.311767054070988	-0.771732555174591	-0.00684721864641614	0.998186576973833	1
Merged-chr15-39933610-4	chr15	39933503	39933703	+	962.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172814, intron 1 of 6)	intron (NM_172814, intron 1 of 6)	10391.0	NM_001347036	239393.0	Mm.39874	NM_172814	ENSMUSG00000022305	Lrp12	AI848829|C820005L12Rik|LRP-12	low density lipoprotein-related protein 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-99526405-2	chr12	99526305	99526505	+	549.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37436.0	NR_136760	102639404.0	Mm.396324	NR_136760	ENSMUSG00000097917	Gm26839	-	predicted gene, 26839	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32687871-2	chr2	32687771	32687971	+	711.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_106168)	promoter-TSS (NR_106168)	-105.0	NR_106168	102465885.0		NR_106168	ENSMUSG00000098972	Mir8093	Gm27548|mmu-mir-8093	microRNA 8093	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-158213237-2	chr2	158213137	158213337	+	635.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001131021, intron 5 of 15)	intron (NM_001131021, intron 5 of 15)	15987.0	NM_001131021	228846.0	Mm.187574	NM_177657	ENSMUSG00000037813	D630003M21Rik	-	RIKEN cDNA D630003M21 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-98082623-4	chr7	98082524	98082724	+	963.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008663, intron 18 of 48)	intron (NM_008663, intron 18 of 48)	26624.0	NM_001256082	17921.0	Mm.1403	NM_008663	ENSMUSG00000030761	Myo7a	Hdb|Myo7|USH1B|nmf371|polka|sh-1|sh1	myosin VIIA	protein-coding	2.40637853814912	2.3875631793747	3.30292608093128	3.21348795666428	3.07886017895434	2.72296635396889	2.6322722953756	3.43055369567078	0.19625476444325	0.775984288880714	0.998431161219273
Merged-chr13-69788837-1	chr13	69788737	69788937	+	601.0	f1_c57bl6.idr	Intergenic	Intergenic	-21045.0	NM_138596	28077.0	Mm.52583	NM_138596	ENSMUSG00000021598	Med10	AA959813|AI385605|C78613|D13Wsu50e	mediator complex subunit 10	protein-coding	-2.05752322593321	-2.15521190974092	-2.16307242109104	-2.16952927915413	-2.17938029103484	-2.15350850414045	-2.16129297361887	-2.16837350464794	-0.683654500252594	0.846597994014493	1
Merged-chr4-95191883-1	chr4	95191783	95191983	+	907.0	f0_balb.idr	Intergenic	Intergenic	-139661.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-54362374-2	chr3	54362274	54362474	+	630.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001198765, intron 1 of 21)	C-rich|Low_complexity|Low_complexity	1267.0	NM_015784	50706.0	Mm.236067	NM_015784	ENSMUSG00000027750	Postn	A630052E07Rik|AI747096|OSF-2|Osf2|PLF|PN	periostin, osteoblast specific factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91924229-4	chr2	91924117	91924317	+	862.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007699, intron 1 of 1)	intron (NM_007699, intron 1 of 1)	2028.0	NM_007699	12672.0	Mm.330405	NM_007699	ENSMUSG00000040495	Chrm4	Chrm-4|M4	cholinergic receptor, muscarinic 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-145276756-4	chr4	145276648	145276848	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009401, intron 11 of 12)	intron (NM_009401, intron 11 of 12)	-29878.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-94147239-4	chr1	94147125	94147325	+	938.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-94672.0	NM_008798	18566.0	Mm.5024	NM_008798	ENSMUSG00000026285	Pdcd1	Ly101|PD-1|Pdc1	programmed cell death 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127774126-4	chr7	127774010	127774210	+	804.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_198424, exon 2 of 2)	exon (NM_198424, exon 2 of 2)	-3279.0	NM_178029	233904.0	Mm.435494	NM_010940	ENSMUSG00000042308	Setd1a	BC010250|KMT2F|Nsccn1|mKIAA0339|mNSC1	SET domain containing 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122702383-3	chr8	122702293	122702493	+	856.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3284.0	NM_009824	12398.0	Mm.194339	NM_009824	ENSMUSG00000006362	Cbfa2t3	A630044F12Rik|AI465270|AW229127|Cbfa2t3h|ETO-2|Eto2|MTGR2	core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-86180603-3	chr15	86180512	86180712	+	892.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145475, intron 1 of 12)	intron (NM_145475, intron 1 of 12)	-5116.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-134227146-2	chr5	134227046	134227246	+	673.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_010876, intron 4 of 10)	intron (NM_010876, intron 4 of 10)	2479.0	NM_001286037	17969.0	Mm.425296	NM_010876	ENSMUSG00000015950	Ncf1	NCF-47K|NOXO2|Ncf-1|p47-phox|p47<phox>|p47phox	neutrophil cytosolic factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80232770-4	chr7	80232655	80232855	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011870)	promoter-TSS (NM_011870)	50.0	NM_001291276	23991.0	Mm.30217	NM_011870	ENSMUSG00000030538	Cib1	Cibkip|Kip|Prkdcip	calcium and integrin binding 1 (calmyrin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-106214309-1	chr1	106214209	106214409	+	849.0	f0_balb.idr	intron (NM_133821, intron 1 of 16)	intron (NM_133821, intron 1 of 16)	42440.0	NM_133821	98432.0	Mm.24115	NM_133821	ENSMUSG00000044340	Phlpp1	AI836256|Phlpp|Plekhe1|SCOP|mKIAA0606	PH domain and leucine rich repeat protein phosphatase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-63813045-4	chr11	63812961	63813161	+	970.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR10D2|LTR|ERVK	109223.0	NM_018805	54710.0	Mm.274426	NM_018805	ENSMUSG00000070407	Hs3st3b1	3-OST-3B|3OST3B1|3Ost3b|AU041882|AW536289|Hs3st3b|m3-OST-3B	heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	protein-coding	-0.755998668505046	-0.746265234757744	-0.1835011411898	-0.751921800996326	-0.374998571242037	-0.745544059796034	-0.748756493287208	-0.75149213951642	-0.730804111338351	0.806793324159422	1
Merged-chr3-153567900-2	chr3	153567800	153568000	+	694.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_011372, intron 1 of 4)	intron (NM_011372, intron 1 of 4)	157233.0	NM_011372	20447.0	Mm.296453	NM_011372	ENSMUSG00000052544	St6galnac3	Siat7c	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-127574195-4	chr6	127574081	127574281	+	979.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3794.0	NM_001033464	381812.0	Mm.296093	NM_001033464	ENSMUSG00000061414	Cracr2a	Efcab4b|Gm1073|Gm462	calcium release activated channel regulator 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-88862781-4	chr4	88862671	88862871	+	943.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	12684.0	NM_010502	15962.0	Mm.57127	NM_010502	ENSMUSG00000095498	Ifna1	Ifa1	interferon alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-110918946-8	chr10	110918838	110919038	+	958.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1238.0	NM_007792	13008.0	Mm.2020	NM_007792	ENSMUSG00000020186	Csrp2	AW551867|Crp2|SmLim	cysteine and glycine-rich protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-85223370-3	chr13	85223274	85223474	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145452, intron 20 of 24)	intron (NM_145452, intron 20 of 24)	33989.0	NM_023243	66671.0	Mm.18474	NM_023243	ENSMUSG00000021548	Ccnh	6330408H09Rik|AI661354|AV102684|AW538719	cyclin H	protein-coding	4.15886031723294	5.33860942026905	4.12726594958368	5.05542209305253	4.92514248644046	5.5000182341161	5.28320430822335	5.47590577586511	0.646669597347642	0.0761524025360851	0.418588421311453
Merged-chr14-41006428-4	chr14	41006333	41006533	+	913.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316732, intron 1 of 6)	intron (NM_001316732, intron 1 of 6)	487.0	NM_001316739	70564.0	Mm.27227	NM_027464	ENSMUSG00000021792	Fam213a	5730469M10Rik|AU040822|Adrx|Pamm	family with sequence similarity 213, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-9491286-4	chr18	9491241	9491441	+	970.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41187.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-177261023-4	chr1	177260922	177261122	+	995.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12255.0	NM_011785	23797.0	Mm.235194	NM_011785	ENSMUSG00000019699	Akt3	AI851531|D930002M15Rik|Nmf350	thymoma viral proto-oncogene 3	protein-coding	2.40024580378622	3.64256411805602	2.29928905349309	3.06706160623744	2.42120721978589	3.45456908242811	2.76410537462514	3.24285609749944	0.10416045120684	0.883288618439925	0.998431161219273
Merged-chr11-115639144-4	chr11	115639038	115639238	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10843.0	NM_001252395	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-110561845-2	chr6	110561745	110561945	+	602.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3C|LINE|L1	-83667.0	NM_001346640	108073.0	Mm.240881	NM_177328	ENSMUSG00000056755	Grm7	6330570A01Rik|BB176677|C030018L03|E130018M02Rik|Gpr1g|Gprc1g|SMN2|Tg(SMN2)89Ahmb|mGluR7	glutamate receptor, metabotropic 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-5348990-4	chr18	5348902	5349102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14195.0	NM_001360447	240186.0	Mm.118257	NM_178722	ENSMUSG00000050945	Zfp438	9430031G09|9430091M14Rik|B830013J05Rik	zinc finger protein 438	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-13464268-2	chr16	13464168	13464368	+	580.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4593.0	NR_153791	102635495.0		NR_153791		Gm32817	Gm45563	predicted gene, 32817	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-132315162-2	chr7	132315062	132315262	+	786.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028578)	promoter-TSS (NR_028578)	-502.0	NR_028578	100043682.0	Mm.482794	NR_028578	ENSMUSG00000109270	Gm10584	-	predicted gene 10584	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-60735755-2	chr18	60735655	60735855	+	591.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001348146, intron 1 of 6)	intron (NM_001348146, intron 1 of 6)	-2614.0	NM_001348102	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-164856042-2	chr2	164855942	164856142	+	877.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011125, intron 3 of 15)	B3|SINE|B2	1666.0	NM_011125	18830.0	Mm.6105	NM_011125	ENSMUSG00000017754	Pltp	Bpife|OD107	phospholipid transfer protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-57375355-3	chr19	57375258	57375458	+	593.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145505, intron 5 of 16)	RLTR16B_MM|LTR|ERVK	14349.0	NM_145505	226252.0	Mm.358870	NM_145505	ENSMUSG00000033478	Fam160b1	AI450540|mKIAA1600	family with sequence similarity 160, member B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-65157029-2	chr5	65156929	65157129	+	703.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_175174, intron 6 of 10)	B3|SINE|B2	25798.0	NM_175174	71778.0	Mm.10281	NM_175174	ENSMUSG00000054920	Klhl5	1300013C10Rik	kelch-like 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128544345-2	chr10	128544245	128544445	+	727.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_134003, exon 3 of 3)	exon (NM_134003, exon 3 of 3)	3399.0	NM_134003	103284.0	Mm.68289	NM_134003	ENSMUSG00000039810	Zc3h10	AI790326	zinc finger CCCH type containing 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-56292499-4	chr8	56292321	56292521	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2131.0	NM_008278	15446.0	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-38131449-1	chr7	38131349	38131549	+	758.0	f1_balb.idr	Intergenic	Intergenic	-23959.0	NM_007633	12447.0	Mm.16110	NM_007633	ENSMUSG00000002068	Ccne1	AW538188|CycE1	cyclin E1	protein-coding	2.40107880800702	0.970420098274715	0.938870560947244	0.913328805423598	2.72429204399773	2.75706518008443	1.23221305126625	1.41057975435224	1.66714087534077	0.183384963214579	0.658116185534174
Merged-chr11-119354194-1	chr11	119354094	119354294	+	1000.0	f1_balb.idr	intron (NM_018822, intron 1 of 7)	intron (NM_018822, intron 1 of 7)	1316.0	NM_018822	27029.0	Mm.103788	NM_018822	ENSMUSG00000005043	Sgsh	4632406A19Rik	N-sulfoglucosamine sulfohydrolase (sulfamidase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-95976632-2	chr15	95976532	95976732	+	657.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	102921.0	NR_126493	402773.0	Mm.210567	NM_001033483	ENSMUSG00000078925	D030018L15Rik	-	nuclear receptor coactivator 2 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64812251-3	chr5	64812149	64812349	+	840.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008453, intron 1 of 5)	intron (NM_008453, intron 1 of 5)	8726.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65552920-2	chr9	65552820	65553020	+	768.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_153119, exon 6 of 6)	3' UTR (NM_153119, exon 6 of 6)	27167.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-4261311-4	chr11	4261218	4261418	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008501, intron 1 of 3)	intron (NM_008501, intron 1 of 3)	3750.0	NM_008501	16878.0	Mm.4964	NM_008501	ENSMUSG00000034394	Lif	-	leukemia inhibitory factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-125607597-2	chr1	125607497	125607697	+	694.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46595.0	NM_028787	74150.0	Mm.28654	NM_028787	ENSMUSG00000026342	Slc35f5	1300003P13Rik|AI646727	solute carrier family 35, member F5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-80703278-2	chr16	80703178	80703378	+	571.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB-int|LTR|ERVL-MaLR	-497419.0	NM_001113208	17968.0	Mm.433941	NM_010954	ENSMUSG00000022762	Ncam2	Ncam-2|Ocam|RNCAM	neural cell adhesion molecule 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34862284-4	chr17	34862192	34862392	+	937.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_013484)	TTS (NM_013484)	222.0	NM_001142706	14962.0	Mm.653	NM_008198	ENSMUSG00000090231	Cfb	AI195813|AI255840|B|Bf|C2|Fb|H2-Bf	complement factor B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-14960979-5	chr17	14960885	14961085	+	778.780029	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024250, intron 1 of 11)	CpG	275.0	NM_001360983	72057.0	Mm.440085	NM_024250	ENSMUSG00000023883	Phf10	1810055P05Rik|AV024533	PHD finger protein 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5691146-2	chr19	5691016	5691216	+	758.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_022012, intron 3 of 11)	intron (NM_022012, intron 3 of 11)	1985.0	NM_022012	26403.0	Mm.185026	NM_022012	ENSMUSG00000004054	Map3k11	2610017K16Rik|Mlk3|PTK1|SPRK	mitogen-activated protein kinase kinase kinase 11	protein-coding	1.38546954592956	1.06559809837761	1.29687237081788	2.31213407386699	1.81747468591737	1.07165133502758	2.77360267263713	2.14168718184475	1.20028665352053	0.30058028660165	0.801963340127147
Merged-chr7-45562031-2	chr7	45561931	45562131	+	678.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025330, intron 5 of 8)	intron (NM_025330, intron 5 of 8)	7103.0	NM_025330	66065.0	Mm.285710	NM_025330	ENSMUSG00000030825	Hsd17b14	0610039E24Rik|Dhrs10|retSDR3	hydroxysteroid (17-beta) dehydrogenase 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46305661-4	chr19	46305571	46305771	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177370)	promoter-TSS (NM_001177370)	-24.0	NM_019408	18034.0	Mm.102365	NM_019408	ENSMUSG00000025225	Nfkb2	NF-kappaB2|lyt|p49|p49/p100|p50B|p52	nuclear factor of kappa light polypeptide gene enhancer in B cells 2, p49/p100	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-86529190-6	chr1	86529120	86529320	+	870.211121	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001360831, exon 2 of 5)	exon (NM_001360831, exon 2 of 5)	2663.0	NM_001360830	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-79499491-4	chr2	79499398	79499598	+	838.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42862.0	NM_010894	18012.0	Mm.4636	NM_010894	ENSMUSG00000034701	Neurod1	BETA2|BHF-1|Nd1|Neurod|bHLHa3	neurogenic differentiation 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-58712415-4	chr16	58712326	58712526	+	978.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6298.0	NM_001162955	71223.0	Mm.359970	NM_001162955	ENSMUSG00000047293	Gpr15	4933439K08Rik	G protein-coupled receptor 15	protein-coding	4.63915502426439	4.74029200933694	3.48598790349578	4.48060964167986	4.01498518662597	4.4161841887756	3.61452925578183	4.31428323590672	-0.390763383810793	0.382860102208838	0.873853298598916
Merged-chr2-181600390-2	chr2	181600290	181600490	+	827.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133701)	promoter-TSS (NM_133701)	-929.0	NM_133701	68879.0	Mm.292001	NM_133701	ENSMUSG00000002455	Prpf6	1190003A07Rik|2610031L17Rik|ANT-1|U5-102K	pre-mRNA splicing factor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-24809028-2	chr10	24808927	24809127	+	693.25	f0_c57.idr|f1_c57bl6.idr	intron (NM_134005, intron 7 of 24)	RSINE1|SINE|B4	27168.0	NM_134005	209558.0	Mm.338425	NM_134005	ENSMUSG00000019989	Enpp3	AI876438|CD203c	ectonucleotide pyrophosphatase/phosphodiesterase 3	protein-coding	3.29624924939835	3.21019805638006	3.01703554905157	2.93021885076966	1.34500150301949	2.7185611414459	2.94980545063502	1.41326604106249	-1.52380201229978	0.0740019184269665	0.410891375174802
Merged-chr14-60990284-4	chr14	60990188	60990388	+	988.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013869, intron 5 of 9)	intron (NM_013869, intron 5 of 9)	47699.0	NM_001164155	29820.0	Mm.281356	NM_013869	ENSMUSG00000060548	Tnfrsf19	AL023044|AW123854|TAJ|TAJ-ALPHA|TRADE|Troy	tumor necrosis factor receptor superfamily, member 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-127143324-4	chr6	127143201	127143401	+	716.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009829, intron 3 of 4)	intron (NM_009829, intron 3 of 4)	-6088.0	NR_040274	77558.0	Mm.358918	NR_040273	ENSMUSG00000097166	9330179D12Rik	-	RIKEN cDNA 9330179D12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-65525446-2	chr6	65525346	65525546	+	747.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64952.0	NM_001001495	414084.0	Mm.117558	NM_001001495	ENSMUSG00000044162	Tnip3	9030611K07Rik|ABIN-3|LIND	TNFAIP3 interacting protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-78163206-4	chr13	78163088	78163288	+	946.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163420, intron 8 of 8)	intron (NM_001163420, intron 8 of 8)	33261.0	NM_001347538	13865.0	Mm.439653	NM_010151	ENSMUSG00000069171	Nr2f1	COUP-TF1|COUP-TFI|COUPTFA|EAR-3|EAR3|Erbal3|SVP44|Tcfcoup1	nuclear receptor subfamily 2, group F, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-48422499-4	chr9	48422393	48422593	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31851.0	NR_026561	667933.0	Mm.491076	NR_026561		Gm8884	EG667933	predicted gene 8884	ncRNA	4.92220918924923	4.62670908298074	4.53281934918149	4.75719595271131	4.3272534493973	4.43144787282439	4.61421942271086	4.03611955841055	-0.452685696362752	0.21892574285205	0.71029504130311
Merged-chr1-91086324-3	chr1	91086194	91086394	+	911.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008515, intron 7 of 22)	intron (NM_008515, intron 7 of 22)	32850.0	NM_001310732	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35861466-7	chr17	35861320	35861520	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_134122, exon 1 of 4)	exon (NM_134122, exon 1 of 4)	102.0	NM_134122	106582.0	Mm.390992	NM_134122	ENSMUSG00000059791	Nrm	2610307M02Rik|AI429796	nurim (nuclear envelope membrane protein)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120011894-2	chr11	120011794	120011994	+	644.833313	f1_balb.idr|f1_c57bl6.idr	exon (NM_001198785, exon 11 of 14)	exon (NM_001198785, exon 11 of 14)	-2873.0	NR_037225	100526518.0		NR_037225	ENSMUSG00000105524	Mir3065	mir-3065|mmu-mir-3065	microRNA 3065	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167630630-2	chr2	167630530	167630730	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001311131, intron 1 of 4)	intron (NM_001311131, intron 1 of 4)	1375.0	NM_001311146	66589.0	Mm.278783	NM_023230	ENSMUSG00000078923	Ube2v1	0610011J09Rik|AI256840|CROC-1|CROC1|D7Bwg1382e|UEV-1	ubiquitin-conjugating enzyme E2 variant 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-98808462-2	chr15	98808362	98808562	+	605.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001013741)	promoter-TSS (NM_001013741)	-537.0	NM_001013741	13199.0	Mm.390810	NM_001013741	ENSMUSG00000059213	Ddn	Gm748	dendrin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-128913795-4	chr6	128913676	128913876	+	982.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MERVK26-int|LTR|ERVK	18069.0	NR_106107	102465757.0		NR_106107	ENSMUSG00000098359	Mir7649	mmu-mir-7649	microRNA 7649	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-118371535-3	chr14	118371432	118371632	+	899.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045624, intron 3 of 5)	intron (NR_045624, intron 3 of 5)	5654.0	NR_045624	73306.0	Mm.362328	NR_045624	ENSMUSG00000099911	1700044C05Rik	-	RIKEN cDNA 1700044C05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-79202372-4	chr3	79202267	79202467	+	763.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10552.0	NR_045502	70924.0	Mm.444622	NR_045502	ENSMUSG00000104585	4921511C10Rik	-	RIKEN cDNA 4921511C10 gene	ncRNA	-1.13774195324147	-0.946465057820189	-1.12645846150174	-0.973439295403295	-1.13729830338544	-0.944134234112666	-1.12402358729841	-0.970871467138946	0.0348290078530908	0.990305559798761	1
Merged-chr1-165003851-2	chr1	165003751	165003951	+	824.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-68329.0	NM_008510	16963.0	Mm.190	NM_008510	ENSMUSG00000026573	Xcl1	AI661682|ATAC|LTN|Lptn|SCM-1|SCM-1a|Scyc1	chemokine (C motif) ligand 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-40934370-3	chr14	40934280	40934480	+	683.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145928, intron 1 of 8)	intron (NM_145928, intron 1 of 8)	13829.0	NM_001316748	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-26702710-2	chr8	26702610	26702810	+	893.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	121713.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-152803210-2	chr2	152803110	152803310	+	608.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009743, intron 2 of 2)	intron (NM_009743, intron 2 of 2)	25279.0	NR_149254	12048.0	Mm.238213	NM_009743	ENSMUSG00000007659	Bcl2l1	Bcl(X)L|Bcl-XL|Bcl2l|BclX|bcl-x|bcl2-L-1	BCL2-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-7071132-2	chr19	7071032	7071232	+	699.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_134147, intron 3 of 10)	intron (NM_134147, intron 3 of 10)	14364.0	NM_134147	107227.0	Mm.439977	NM_134147	ENSMUSG00000036278	Macrod1	AI604841|AW743046|D930010J01Rik|Lrp16	MACRO domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107645795-4	chr9	107645743	107645943	+	741.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10501.0	NM_008138	14678.0	Mm.196464	NM_008138	ENSMUSG00000032562	Gnai2	C76432|Galphai2|Gia|Gnai-2	guanine nucleotide binding protein (G protein), alpha inhibiting 2	protein-coding	2.70863184004356	3.03214857476646	1.81266392023093	3.01408769859965	3.0248571081718	2.60843665181739	2.3834608836779	2.67550704608243	-0.0613307945898192	0.935313100563086	0.998431161219273
Merged-chr2-176708165-4	chr2	176708051	176708251	+	972.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001099327)	promoter-TSS (NM_001099327)	-202.0	NM_001099327	100043387.0	Mm.444048	NM_001099327	ENSMUSG00000078878	Gm14305	-	predicted gene 14305	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-40346658-3	chr9	40346475	40346675	+	608.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357619)	promoter-TSS (NM_001357619)	-330.0	NM_001357619	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-59179537-2	chr2	59179437	59179637	+	684.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 1 of 20)	intron (NM_175464, intron 1 of 20)	18687.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33770085-4	chr16	33770012	33770212	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23925.0	NM_010739	17063.0	Mm.3177	NM_010739	ENSMUSG00000022824	Muc13	114/A10|14/A10|AI159736|Lrrp|Ly64|NJ-1	mucin 13, epithelial transmembrane	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91741666-2	chr16	91741566	91741766	+	700.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110276, intron 1 of 15)	MER21C|LTR|ERVL	12295.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150079823-2	chr4	150079744	150079944	+	770.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7659.0	NM_177366	269604.0	Mm.219307	NM_177366	ENSMUSG00000047875	Gpr157	F730108M23Rik	G protein-coupled receptor 157	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-70335778-2	chr16	70335678	70335878	+	557.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028803, intron 1 of 15)	ORR1A4|LTR|ERVL-MaLR	21829.0	NM_028803	74185.0	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118745609-2	chr9	118745513	118745713	+	612.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 1 of 13)	RMER19C|LTR|ERVK	33921.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-63956142-3	chr9	63956020	63956220	+	857.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008542, intron 3 of 3)	intron (NM_008542, intron 3 of 3)	65939.0	NM_008542	17130.0	Mm.325757	NM_008542	ENSMUSG00000036867	Smad6	Madh6|b2b390Clo	SMAD family member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-118882740-4	chr10	118882639	118882839	+	872.94165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13836.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-101675846-4	chr4	101675754	101675954	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28071.0	NM_175036	230514.0	Mm.4756	NM_175036	ENSMUSG00000035212	Leprot	LEPR|OB-RGRP|Obrgrp|VPS55	leptin receptor overlapping transcript	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-61571572-2	chr14	61571472	61571672	+	796.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14686.0	NM_001310603	66674.0	Mm.282706	NM_025697	ENSMUSG00000021930	Spryd7	6330409N04Rik|Clld6	SPRY domain containing 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-59040314-4	chr12	59040277	59040477	+	832.44165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	U2|snRNA|snRNA	21095.0	NM_001306218	78232.0	Mm.290070	NM_030057	ENSMUSG00000020993	Trappc6b	5830498C14Rik|C79212	trafficking protein particle complex 6B	protein-coding	-0.354568289396101	-0.337059887760252	-0.342743929669417	-0.347163429507212	0.0811876656952609	-0.335785351071051	0.693679296482352	-0.346389168944909	3.93753695883936	0.110995868713028	1
Merged-chr4-3483045-3	chr4	3482952	3483152	+	910.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPEY3-int|LTR|ERVK	-54038.0	NR_037306	100499523.0		NR_037306	ENSMUSG00000094253	Mir3471-2	mmu-mir-3471-2	microRNA 3471-2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32646895-2	chr2	32646795	32646995	+	754.5	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_007932, exon 1 of 15)	5' UTR (NM_007932, exon 1 of 15)	300.0	NM_001146348	13805.0	Mm.225297	NM_007932	ENSMUSG00000026814	Eng	AI528660|AI662476|CD105|Endo|S-endoglin	endoglin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-55951734-4	chr16	55951691	55951891	+	970.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14484.0	NM_024218	68193.0	Mm.29221	NM_024218	ENSMUSG00000098274	Rpl24	0610008L05Rik|Bst	ribosomal protein L24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-73017829-4	chr15	73017731	73017931	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029640, intron 6 of 21)	intron (NM_029640, intron 6 of 21)	37981.0	NM_029640	76510.0	Mm.158902	NM_029640	ENSMUSG00000047921	Trappc9	1810044A24Rik|2900005P22Rik|4632408O18Rik|Ibp|Nibp|TRS130|mKIAA1882	trafficking protein particle complex 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127211153-2	chr10	127211053	127211253	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359280, intron 1 of 10)	intron (NM_001359280, intron 1 of 10)	469.0	NM_054097	117150.0	Mm.22682	NM_054097	ENSMUSG00000025417	Pip4k2c	Pip5k2c	phosphatidylinositol-5-phosphate 4-kinase, type II, gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-105978795-3	chr11	105978671	105978871	+	925.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001281819, intron 15 of 23)	intron (NM_001281819, intron 15 of 23)	3563.0	NM_009598	11421.0	Mm.754	NM_009598	ENSMUSG00000020681	Ace	AW208573|CD143	angiotensin I converting enzyme (peptidyl-dipeptidase A) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-90239289-3	chr9	90239283	90239483	+	792.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 3 of 12)	L1MB8|LINE|L1	31386.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	-0.892372963966575	-0.835770159427186	-1.02403052141124	-0.613713543478839	-1.03045515683169	-1.01034285374598	-1.02148381531241	-1.02741923617892	-2.70101083472146	0.355822116193515	1
Merged-chr5-5809453-4	chr5	5809359	5809559	+	983.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60142.0	NM_027399	70358.0	Mm.85429	NM_027399	ENSMUSG00000015652	Steap1	2410007B19Rik|Prss24|Steap	six transmembrane epithelial antigen of the prostate 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167053003-2	chr2	167052903	167053103	+	789.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033196, intron 3 of 13)	L1Md_F2|LINE|L1	-9508.0	NM_001291162	98999.0	Mm.297074	NM_001033196	ENSMUSG00000039501	Znfx1	AI481105|Astx3	zinc finger, NFX1-type containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-4657003-2	chr7	4656903	4657103	+	786.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172894, intron 1 of 23)	intron (NM_172894, intron 1 of 23)	1947.0	NM_172894	243819.0	Mm.258670	NM_172894	ENSMUSG00000052296	Ppp6r1	2010309P17Rik|AI836219|B430201G11Rik|D030074N20Rik|Pp6r1|Saps1|mKIAA1115	protein phosphatase 6, regulatory subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-75030717-1	chr8	75030617	75030817	+	746.0	f0_balb.idr	3' UTR (NM_001316753, exon 12 of 12)	3' UTR (NM_001316753, exon 12 of 12)	-2969.0	NM_001136259	21968.0	Mm.1967	NM_011622	ENSMUSG00000042870	Tom1	-	target of myb1 trafficking protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-29739547-2	chr5	29739447	29739647	+	584.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359198, intron 1 of 8)	intron (NM_001359198, intron 1 of 8)	-3611.0	NR_028426	332993.0	Mm.473746	NR_028426		Gm5129	EG332993	predicted gene 5129	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-67780154-4	chr13	67780051	67780251	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028402, intron 1 of 3)	intron (NM_028402, intron 1 of 3)	458.0	NM_028402	72958.0	Mm.53849	NM_028402	ENSMUSG00000090659	Zfp493	2900054J07Rik|Rslcan12	zinc finger protein 493	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-163659190-2	chr2	163659090	163659290	+	545.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001039390, exon 2 of 5)	5' UTR (NM_001039390, exon 2 of 5)	732.0	NM_001164053	18769.0	Mm.10091	NM_011106	ENSMUSG00000035268	Pkig	PKIgamma	protein kinase inhibitor, gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-76246595-2	chr8	76246495	76246695	+	570.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1C|Other|Other	654026.0	NR_028579	102640923.0	Mm.367571	NR_028579	ENSMUSG00000074235	Gm10649	-	predicted gene 10649	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-108445472-4	chr11	108445354	108445554	+	928.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029606, intron 5 of 27)	intron (NM_029606, intron 5 of 27)	20188.0	NM_029606	76380.0	Mm.344071	NM_029586	ENSMUSG00000020728	Cep112	1700001M19Rik|1700029K01Rik|8430407H02Rik|AV043680|AV207351|Ccdc46|Macoco	centrosomal protein 112	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-37146213-4	chr10	37146125	37146325	+	782.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-7299.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-7941797-3	chr15	7941778	7941978	+	752.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081402, intron 10 of 17)	intron (NM_001081402, intron 10 of 17)	126328.0	NM_001301357	14573.0	Mm.4679	NM_010275	ENSMUSG00000022144	Gdnf	AI385739|ATF	glial cell line derived neurotrophic factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153415685-2	chr2	153415585	153415785	+	805.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001986, intron 7 of 7)	intron (NM_001001986, intron 7 of 7)	28794.0	NM_001001986	329540.0	Mm.50600	NM_001001986	ENSMUSG00000061411	Nol4l	4931410H15|8430427H17Rik|AI429157|Gm1636	nucleolar protein 4-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-137518626-2	chr5	137518526	137518726	+	717.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031408)	promoter-TSS (NM_031408)	-254.0	NM_031408	57330.0	Mm.268344	NM_031408	ENSMUSG00000029714	Gigyf1	Perq1|mKIAA4110	GRB10 interacting GYF protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-76942852-2	chr12	76942752	76942952	+	788.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361663, intron 3 of 4)	intron (NM_001361663, intron 3 of 4)	19396.0	NM_008558	17187.0	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45477216-2	chr7	45477116	45477316	+	559.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027903, intron 5 of 6)	intron (NM_027903, intron 5 of 6)	-9046.0	NM_001290996	56734.0	Mm.439742	NM_008807	ENSMUSG00000023467	Tulp2	Pdet	tubby-like protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129623459-1	chr2	129623359	129623559	+	583.0	f1_c57bl6.idr	intron (NM_001355158, intron 7 of 8)	intron (NM_001355158, intron 7 of 8)	27997.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	0.28299245739046	-0.105103487957689	-0.108507794867223	0.24968809269021	-0.114733619652623	-0.104330287024871	-0.10776057359074	0.344645923124089	-0.641352853002159	0.787959058926	1
Merged-chr3-90126521-2	chr3	90126421	90126621	+	556.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029937, intron 7 of 39)	intron (NM_029937, intron 7 of 39)	22389.0	NM_029937	77595.0	Mm.159949	NM_029937	ENSMUSG00000027939	Nup210l	4930548O11Rik|R26-EGFP|Tg(Gt(ROSA)26Sor-EGFP)130910Eps	nucleoporin 210-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117321460-2	chr8	117321360	117321560	+	849.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	-27710.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-78323135-4	chr11	78323105	78323305	+	929.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009657)	promoter-TSS (NM_009657)	132.0	NM_001303423	11676.0	Mm.7729	NM_009657	ENSMUSG00000017390	Aldoc	AI847350|AU040929|Aldo3|Scrg2	aldolase C, fructose-bisphosphate	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3720573-3	chr4	3720543	3720743	+	885.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 1 of 12)	intron (NM_001111096, intron 1 of 12)	5679.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	2.55065247241863	2.15176571664844	1.62776952266443	2.4856010154072	1.80593076426164	1.21262851281833	1.18529545678535	2.24063197352359	-1.43678075358617	0.177579620760762	0.647598872306267
Merged-chr10-121458262-5	chr10	121458142	121458342	+	672.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138956, intron 1 of 4)	intron (NM_138956, intron 1 of 4)	18008.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	1.16630884415453	1.31269568908501	2.88188921481627	2.02028711112292	2.49035150169134	1.03358162062755	1.00431396806655	1.77827910969244	-0.717997634892497	0.550066523972891	0.958882219733107
Merged-chr2-142531421-1	chr2	142531321	142531521	+	540.0	f1_balb.idr	Intergenic	Intergenic	370043.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-117090105-2	chr5	117090005	117090205	+	828.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25888.0	NM_001122666	71954.0	Mm.34456	NM_178622	ENSMUSG00000066900	Suds3	2400003N08Rik|2410008L21Rik|AU067672|mSds3	suppressor of defective silencing 3 homolog (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-55693015-4	chr13	55692883	55693083	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181278)	promoter-TSS (NM_181278)	-141.0	NM_181278	78521.0	Mm.28449	NM_181278	ENSMUSG00000045767	B230219D22Rik	AA119856|D530037I19Rik	RIKEN cDNA B230219D22 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-91056623-4	chr1	91056542	91056742	+	809.450012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008515, intron 1 of 22)	intron (NM_008515, intron 1 of 22)	3198.0	NM_001310732	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-3894120-2	chr5	3894020	3894220	+	646.083374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001013023)	promoter-TSS (NM_001013023)	-187.0	NM_172135	545725.0	Mm.99593	NM_172135	ENSMUSG00000040429	Mterf1a	4931431L11Rik|9230106K09Rik|Mterf|Mterf1|mTERF1b	mitochondrial transcription termination factor 1a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-52486786-3	chr6	52486708	52486908	+	725.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5643.0	NR_046049	74304.0	Mm.490579	NR_046049	ENSMUSG00000107895	1700094M24Rik	-	RIKEN cDNA 1700094M24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-95709807-2	chr16	95709707	95709907	+	964.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_011809, exon 3 of 10)	exon (NM_011809, exon 3 of 10)	7400.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-10885638-3	chr15	10885475	10885675	+	619.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR50|LTR|ERVL	56524.0	NR_040357	100502601.0	Mm.399434	NR_040357		Gm19276	-	predicted gene, 19276	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-118883530-4	chr10	118883470	118883670	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-14667.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	5.14133223082433	4.55152020344204	4.79464437976037	3.9707436146897	5.29343844716504	4.84245831358991	4.78556975290992	4.18960929455244	0.187064266714906	0.637346701867847	0.982417279970648
Merged-chr6-72142246-2	chr6	72142146	72142346	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_011375, exon 4 of 7)	exon (NM_011375, exon 4 of 7)	-19049.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45053836-2	chr7	45053739	45053939	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175022)	promoter-TSS (NM_175022)	-958.0	NM_175022	233210.0	Mm.219137	NM_175022	ENSMUSG00000046574	Prr12	6720469B10|BC058674	proline rich 12	protein-coding	2.93352417440628	4.50459776866889	3.19666618560578	3.29927241845264	4.13424057476574	3.54233577083414	3.22272564633051	3.31669321486807	-0.0339488724586656	0.954331944226556	0.998431161219273
Merged-chr4-47346074-2	chr4	47345974	47346174	+	596.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-7148.0	NM_001312868	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-3175756-4	chr11	3175593	3175793	+	983.0	f0_balb.idr|f1_balb.idr	intron (NM_030207, intron 6 of 32)	B2_Mm1t|SINE|B2	17770.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	0.183063495418154	0.0643890331477447	0.0594558937859037	0.209600765552069	0.409762369770206	0.654970498428821	0.230016079446938	0.212380747913528	2.28264102633341	0.23661645014494	1
Merged-chr19-6085729-4	chr19	6085624	6085824	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024231)	promoter-TSS (NM_024231)	627.0	NM_026410	67849.0	Mm.23526	NM_026410	ENSMUSG00000024791	Cdca5	2610036L13Rik|AL024086|AW536684|C85404	cell division cycle associated 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-108582944-1	chr5	108582844	108583044	+	819.0	f1_balb.idr	exon (NM_001282052, exon 20 of 27)	exon (NM_001282052, exon 20 of 27)	-32917.0	NM_007756	12889.0	Mm.5195	NM_007756	ENSMUSG00000033615	Cplx1	921-S	complexin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-106152515-2	chr8	106152415	106152615	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357319, intron 1 of 5)	B1_Mus1|SINE|Alu	2161.0	NM_001357319	192654.0	Mm.284770	NM_133792	ENSMUSG00000031903	Pla2g15	ACS|C87498|LLPL|Lpla2|Lypla3	phospholipase A2, group XV	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-12009241-2	chr19	12009141	12009341	+	862.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27499.0	NM_146680	258675.0	Mm.271517	NM_146680	ENSMUSG00000067529	Olfr1423	MOR239-3	olfactory receptor 1423	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-88548158-5	chr9	88548095	88548295	+	905.7333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001142943, exon 1 of 6)	5' UTR (NM_001142943, exon 1 of 6)	175.0	NM_001142943	71640.0	Mm.259988	NM_001142943	ENSMUSG00000032425	Zfp949	4930422I07Rik|Nczf	zinc finger protein 949	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-30630611-2	chr14	30630511	30630711	+	807.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4403.0	NM_011103	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-56296513-2	chr8	56296413	56296613	+	811.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008278, intron 2 of 6)	intron (NM_008278, intron 2 of 6)	1961.0	NM_008278	15446.0	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-5202809-4	chr16	5202718	5202918	+	995.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027804, intron 1 of 8)	intron (NR_027804, intron 1 of 8)	1194.0	NM_013796	27426.0	Mm.215641	NM_013796	ENSMUSG00000023143	Nagpa	AI596180|UCE	N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-48316124-4	chr17	48316040	48316240	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177083)	promoter-TSS (NM_177083)	-22.0	NM_177083	320148.0	Mm.123455	NM_177083	ENSMUSG00000043740	B430306N03Rik	Treml6	RIKEN cDNA B430306N03 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-57356431-3	chr2	57356288	57356488	+	752.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010274, intron 11 of 16)	intron (NM_010274, intron 11 of 16)	118006.0	NM_010274	14571.0	Mm.3711	NM_010274	ENSMUSG00000026827	Gpd2	AA408484|AI448216|AU021455|AW494132|GPDH|Gdm1|Gpd-m|Gpdh-m|TISP38	glycerol phosphate dehydrogenase 2, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-142449357-4	chr7	142449257	142449457	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	6889.0	NM_009405	21953.0	Mm.39469	NM_009405	ENSMUSG00000031097	Tnni2	-	troponin I, skeletal, fast 2	protein-coding	4.6341806184226	3.69223587301373	4.98213590340646	5.26036284691466	4.59524794099425	3.72172117436261	5.01637943941649	5.28294313457255	0.0158575536524395	0.971268905683946	0.998431161219273
Merged-chr3-9647205-4	chr3	9647111	9647311	+	883.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-37126.0	NM_133218	170753.0	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-80026389-1	chr15	80026289	80026489	+	566.0	f0_balb.idr	Intergenic	Intergenic	-11581.0	NM_011057	18591.0	Mm.144089	NM_011057	ENSMUSG00000000489	Pdgfb	PDGF-B|Sis	platelet derived growth factor, B polypeptide	protein-coding	0.96361125146988	0.586741083009158	0.577067295234256	0.747595243988084	1.480114551432	0.799597709300497	1.19604280865806	0.902656693005879	2.07894228778793	0.176643013132982	1
Merged-chr7-19749007-2	chr7	19748907	19749107	+	847.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008990, intron 1 of 8)	intron (NM_008990, intron 1 of 8)	566.0	NM_008990	19294.0	Mm.4341	NM_008990	ENSMUSG00000062300	Nectin2	AI325026|AI987993|Cd112|MPH|Pvr|Pvrl2|Pvs|nectin-2	nectin cell adhesion molecule 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-25740457-2	chr14	25740357	25740557	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001101433, intron 2 of 3)	intron (NM_001101433, intron 2 of 3)	28399.0	NM_001101433	71918.0	Mm.41904	NM_001101433	ENSMUSG00000055538	Zcchc24	2310047A01Rik	zinc finger, CCHC domain containing 24	protein-coding	-0.652730458705985	-0.901230504172763	-0.90922183295875	-0.911372894819538	-0.352564959149449	-0.898600369853294	-0.908605972400679	-0.910997479715934	1.18941392580168	0.704270754228478	1
Merged-chr2-78534065-2	chr2	78533965	78534165	+	551.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	296518.0	NM_177843	329436.0	Mm.235448	NM_177843		Gm14461	A830093M07	predicted gene 14461	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-41437586-3	chr13	41437489	41437689	+	969.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111324, intron 1 of 7)	intron (NM_001111324, intron 1 of 7)	49771.0	NM_001111324	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-33818205-2	chr17	33818079	33818279	+	1000.0	f0_balb.idr|f1_balb.idr	exon (NM_030697, exon 3 of 11)	exon (NM_030697, exon 3 of 11)	6383.0	NM_016844	54127.0	Mm.352374	NM_016844	ENSMUSG00000067288	Rps28	-	ribosomal protein S28	protein-coding	3.17923701876769	3.21995726646568	2.76465940411073	1.50040097939436	3.40555345576068	2.89212416759436	4.42414759135276	2.5582982494042	1.13422753839279	0.133418657902382	0.570963408836415
Merged-chr19-10843682-4	chr19	10843561	10843761	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023044, intron 1 of 7)	MIR3|SINE|MIR	1117.0	NM_023044	65221.0	Mm.27387	NM_023044	ENSMUSG00000024737	Slc15a3	Ci1|cI-1	solute carrier family 15, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-38361705-1	chr19	38361605	38361805	+	837.0	f0_balb.idr	Intergenic	L1_Rod|LINE|L1	-34275.0	NM_175507	240660.0	Mm.262085	NM_175507	ENSMUSG00000044026	Slc35g1	AA590464|D330039I19Rik|Tmem20	solute carrier family 35, member G1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-9717183-4	chr10	9717077	9717277	+	995.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32455.0	NR_038036	620417.0	Mm.378085	NR_038036	ENSMUSG00000111901	Gm6150	-	predicted gene 6150	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-89421720-4	chr6	89421628	89421828	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167736, intron 4 of 6)	intron (NM_001167736, intron 4 of 6)	-59115.0	NM_008881	18844.0	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91069741-2	chr2	91069641	91069841	+	844.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290765, intron 1 of 9)	intron (NM_001290765, intron 1 of 9)	574.0	NM_026721	68427.0	Mm.192375	NM_026721	ENSMUSG00000002105	Slc39a13	1100001L14Rik|AA387663|ZIP-13|ZIP13	solute carrier family 39 (metal ion transporter), member 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-17857938-2	chr17	17857841	17858041	+	919.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C|LTR|ERVK	-2753.0	NM_008215	15116.0	Mm.255701	NM_008215	ENSMUSG00000003665	Has1	HAS	hyaluronan synthase 1	protein-coding	-1.8429182434137	-1.8129848525291	-1.82203695700074	-1.54461076807193	-1.84081697472045	-1.81102322372834	-1.81998775896484	-1.82814164409203	-1.43114970378833	0.684630132144154	1
Merged-chr10-118814408-2	chr10	118814308	118814508	+	623.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	54495.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-111295565-3	chr9	111295471	111295671	+	868.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5b|LINE|L1	-16168.0	NM_001164659	320429.0	Mm.270754	NM_001164659	ENSMUSG00000062296	Trank1	A230061D21Rik|C030048J01Rik|Gm187|Lba1	tetratricopeptide repeat and ankyrin repeat containing 1	protein-coding	1.38653964929797	2.17633701638003	2.53076510101773	0.803672996916615	0.767884444682813	0.863746684387533	2.69213897531827	0.807937524934926	-0.623278767755571	0.80232724339264	0.998431161219273
Merged-chr2-172779988-2	chr2	172779826	172780026	+	674.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	160395.0	NM_007557	12162.0	Mm.595	NM_007557	ENSMUSG00000008999	Bmp7	OP1	bone morphogenetic protein 7	protein-coding	-0.682131627535451	-0.671319860668475	-0.674863146230903	-0.677596166135016	-0.291804845436015	-0.0356213560756732	-0.674081735836913	-0.677118762961166	3.33454605312832	0.238118206216222	1
Merged-chr17-84180916-5	chr17	84180772	84180972	+	863.3666380000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7075.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-50755242-2	chr16	50755169	50755369	+	922.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-22496.0	NR_028300	68190.0	Mm.139089	NR_028300		Dubr	5330426P16Rik|Dum	Dppa2 upstream binding RNA	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-42437030-3	chr10	42436916	42437116	+	758.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359297, intron 2 of 11)	intron (NM_001359297, intron 2 of 11)	41549.0	NM_001359297	215951.0	Mm.89646	NM_145743	ENSMUSG00000038302	Afg1l	CG8520|Lace1	AFG1 like ATPase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-57824579-4	chr6	57824490	57824690	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146168, intron 1 of 4)	CpG	535.0	NM_146168	232023.0	Mm.24642	NM_146168	ENSMUSG00000037788	Vopp1	AW146242|Ecop	vesicular, overexpressed in cancer, prosurvival protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-38360243-4	chr6	38360127	38360327	+	930.616699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5624.0	NM_028864	78781.0	Mm.25243	NM_028421	ENSMUSG00000029826	Zc3hav1	1200014N16Rik|2900058M19Rik|9130009D18Rik|9830115L13Rik|ARTD13|D6Bwg1452e|ZAP	zinc finger CCCH type, antiviral 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-74988214-3	chr9	74988123	74988323	+	634.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153584, intron 1 of 11)	intron (NM_153584, intron 1 of 11)	12112.0	NM_153584	235493.0	Mm.208955	NM_153584	ENSMUSG00000034858	Fam214a	6330415I01Rik|AI553555|C130047D21Rik|Kiaa1370|mKIAA1370	family with sequence similarity 214, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-89552649-4	chr1	89552560	89552760	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037136, intron 1 of 16)	intron (NM_001037136, intron 1 of 16)	97849.0	NM_001037136	347722.0	Mm.291135	NM_178119	ENSMUSG00000055013	Agap1	Centg2|Ggap1|R75364|mKIAA1099	ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-94486098-3	chr8	94486001	94486201	+	652.622192	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033207, intron 11 of 48)	L2a|LINE|L2	13338.0	NM_001033207	434341.0	Mm.334720	NM_001033207	ENSMUSG00000074151	Nlrc5	AI451557|AK220210|NOD27	NLR family, CARD domain containing 5	protein-coding	2.35666926017207	2.50906037245891	2.65119000664036	2.57977211928797	2.14736631090535	2.52671983718345	2.67108597852356	2.59246492640981	-0.0651403338971295	0.931148894883713	0.998431161219273
Merged-chr15-98835326-2	chr15	98835226	98835426	+	726.333313	f1_balb.idr|f1_c57bl6.idr	exon (NM_001033276, exon 52 of 55)	exon (NM_001033276, exon 52 of 55)	-3818.0	NM_016781	19082.0	Mm.6670	NM_016781	ENSMUSG00000067713	Prkag1	AA571379|BB036179|Prkaac	protein kinase, AMP-activated, gamma 1 non-catalytic subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-55427447-2	chr13	55427404	55427604	+	759.833374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021489)	promoter-TSS (NM_021489)	-700.0	NM_021489	58992.0	Mm.42224	NM_021489	ENSMUSG00000021492	F12	FXII|HAF	coagulation factor XII (Hageman factor)	protein-coding	0.247789815769812	0.767587265459366	0.0529647442903258	0.0419590195036213	0.0258400273589506	0.0698234574910235	1.85108626092943	0.0439047317306178	1.90778202965236	0.562286690766355	0.960362415684079
Merged-chr11-20633545-2	chr11	20633445	20633645	+	781.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038625, intron 1 of 1)	intron (NM_001038625, intron 1 of 1)	1568.0	NM_001038625	58172.0	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-23898970-2	chr16	23898870	23899070	+	580.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8126.0	NM_009215	20604.0	Mm.2453	NM_009215	ENSMUSG00000004366	Sst	SOM|SRIF|SS|Smst	somatostatin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-107479429-4	chr11	107479343	107479543	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025894)	promoter-TSS (NM_025894)	-85.0	NM_025894	66997.0	Mm.491171	NM_025894	ENSMUSG00000020720	Psmd12	1500002F15Rik|AI480719|P55	proteasome (prosome, macropain) 26S subunit, non-ATPase, 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-104079561-3	chr9	104079453	104079653	+	809.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175324, intron 5 of 19)	B3|SINE|B2	15850.0	NM_175324	102632.0	Mm.41274	NM_175324	ENSMUSG00000090150	Acad11	5730439E10Rik|AI987948	acyl-Coenzyme A dehydrogenase family, member 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53114787-2	chr4	53114687	53114887	+	932.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 5 of 49)	MIRc|SINE|MIR	45108.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-9773941-3	chr17	9773840	9774040	+	989.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045433, intron 2 of 3)	intron (NR_045433, intron 2 of 3)	1926.0	NR_045433	71092.0	Mm.243827	NR_045433		4930452A19Rik	4933424P20Rik	RIKEN cDNA 4930452A19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-31032324-2	chr8	31032224	31032424	+	889.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57203.0	NM_025869	66959.0	Mm.23916	NM_025869	ENSMUSG00000039661	Dusp26	2310043K02Rik|Skrp3	dual specificity phosphatase 26 (putative)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-4877023-4	chr7	4876923	4877123	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001101598)	promoter-TSS (NM_001101598)	-30.0	NM_001101598	664994.0	Mm.302624	NM_001101598	ENSMUSG00000086784	Isoc2a	Isoc2	isochorismatase domain containing 2a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-57697356-3	chr3	57697205	57697405	+	775.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR11A2|LTR|ERVK	-4768.0	NM_001033349	242037.0	Mm.291091	NM_001033349	ENSMUSG00000074591	Ankub1	Gm410	ankrin repeat and ubiquitin domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-45416840-3	chr13	45416737	45416937	+	819.9111330000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27095.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-96880563-4	chr11	96880493	96880693	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19C|LTR|ERVK	30200.0	NR_029562	387170.0		NR_029562	ENSMUSG00000065515	Mir152	Mirn152|mir-152|mmu-mir-152	microRNA 152	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-101995064-3	chr12	101995056	101995256	+	934.944458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016856, intron 8 of 14)	(CA)n|Simple_repeat|Simple_repeat	19182.0	NM_016856	51786.0	Mm.716	NM_016856	ENSMUSG00000041781	Cpsf2	100kDa|2610024B04Rik|AI662483|Cpsf|MCPSF|mKIAA1367	cleavage and polyadenylation specific factor 2	protein-coding	3.80897166142623	3.56584737685588	2.66704520285114	3.12389408207021	2.70712884030311	3.04108356317364	2.37342656975513	3.05020761363833	-0.9426381575522	0.146245375071305	0.596296396331935
Merged-chr8-103578316-3	chr8	103578216	103578416	+	853.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-25483.0	NR_045730	71058.0	Mm.67707	NR_045730	ENSMUSG00000110336	4933400L20Rik	-	RIKEN cDNA 4933400L20 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-37315213-4	chr1	37315092	37315292	+	917.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030266, intron 1 of 25)	intron (NM_030266, intron 1 of 25)	15354.0	NM_001290797	269180.0	Mm.5294	NM_030266	ENSMUSG00000026113	Inpp4a	107kDa|9630012D15|D130048C09Rik|R74740	inositol polyphosphate-4-phosphatase, type I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-63659295-2	chr4	63659195	63659395	+	599.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24874.0	NR_151544	102632940.0	Mm.399154	NR_151544	ENSMUSG00000086817	Gm11482	-	predicted gene 11482	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-29462662-4	chr19	29462540	29462740	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021396, intron 5 of 5)	ORR1E|LTR|ERVL-MaLR	51721.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-56490141-2	chr18	56490041	56490241	+	661.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360917, intron 10 of 13)	ORR1B1|LTR|ERVL-MaLR	-47998.0	NR_106160	102465790.0		NR_106160	ENSMUSG00000099196	Mir1258	Gm27371|mmu-mir-1258	microRNA 1258	ncRNA	-0.598804160467394	-0.831885661755018	-0.673792311742116	-0.837341639764865	-0.59299097997595	-0.829357217151489	-0.834893757681729	-0.685371673310382	-0.00659532646995267	0.998053431522818	1
Merged-chr8-70688335-2	chr8	70688205	70688405	+	801.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9434.0	NM_010592	16478.0	Mm.419851	NM_010592	ENSMUSG00000071076	Jund	Jund1	jun D proto-oncogene	protein-coding	-0.00608917295765257	0.0102629944200158	0.00490509289280558	0.529058268426372	0.641431796819629	0.0114709231373906	0.0060867225527424	0.428361597045156	1.04262709978732	0.644053574250472	1
Merged-chr5-65537159-4	chr5	65537056	65537256	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310618)	promoter-TSS (NM_001310618)	-89.0	NM_016786	53323.0	Mm.319512	NM_016786	ENSMUSG00000029203	Ube2k	AW492011|D5Ertd601e|E2-25k|HIP-2|Hip2|Hypg|Lig	ubiquitin-conjugating enzyme E2K	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-61929031-4	chr8	61928935	61929135	+	719.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293783, intron 1 of 37)	intron (NM_001293783, intron 1 of 37)	948.0	NM_001293783	234311.0	Mm.275233	NM_144928	ENSMUSG00000037921	Ddx60	9830118M07	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-124712998-4	chr2	124712890	124713090	+	832.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A3|LTR|ERVL-MaLR	59409.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89963495-4	chr3	89963362	89963562	+	766.200012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081182)	promoter-TSS (NM_001081182)	-130.0	NM_001081182	54667.0	Mm.30455	NM_001081182	ENSMUSG00000060671	Atp8b2	Id	ATPase, class I, type 8B, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-120513023-4	chr5	120512911	120513111	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177595, intron 1 of 13)	intron (NM_001177595, intron 1 of 13)	1819.0	NM_001177594	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-7039038-2	chr10	7038938	7039138	+	670.083374	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001302795)	TTS (NM_001302795)	-15853.0	NM_001033391	320495.0	Mm.331674	NM_001033391	ENSMUSG00000064065	Ipcef1	A130090K04Rik	interaction protein for cytohesin exchange factors 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-51609761-2	chr11	51609661	51609861	+	586.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-2880.0	NM_010448	15384.0	Mm.256875	NM_010448	ENSMUSG00000020358	Hnrnpab	3010025C11Rik|CBF-A|Cgbfa|Hnrpab	heterogeneous nuclear ribonucleoprotein A/B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21017762-3	chr9	21017642	21017842	+	926.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010493, intron 1 of 6)	B1F2|SINE|Alu	1802.0	NM_010493	15894.0	Mm.435508	NM_010493	ENSMUSG00000037405	Icam1	CD54|Icam-1|Ly-47|MALA-2	intercellular adhesion molecule 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-5448383-2	chr15	5448283	5448483	+	704.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx10|LINE|L1	-47935.0	NR_045274	71432.0	Mm.291087	NR_045274	ENSMUSG00000110018	5430437J10Rik	-	RIKEN cDNA 5430437J10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-107013706-2	chr4	107013606	107013806	+	650.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198438, intron 5 of 16)	intron (NM_198438, intron 5 of 16)	53160.0	NM_025500	56280.0	Mm.29517	NM_025500	ENSMUSG00000028622	Mrpl37	2300004O14Rik|AI132596|MRP-L2|Rpml2	mitochondrial ribosomal protein L37	protein-coding	2.11063731505516	1.58792227075841	0.971777069507198	0.957381589821931	1.28620233510502	1.6001911491817	1.9105725378044	1.62646199547382	0.319681678412248	0.797158789930472	0.998431161219273
Merged-chr3-135522127-3	chr3	135522022	135522222	+	732.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027288, intron 5 of 16)	intron (NM_027288, intron 5 of 16)	36511.0	NM_027288	110173.0	Mm.280536	NM_027288	ENSMUSG00000028164	Manba	2410030O07Rik|B930014J03Rik|Bmn	mannosidase, beta A, lysosomal	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-132264818-3	chr1	132264724	132264924	+	745.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2c|LINE|L2	-33802.0	NM_144810	213417.0	Mm.39723	NM_144810	ENSMUSG00000042115	Klhdc8a	A630065K24Rik	kelch domain containing 8A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-18797651-2	chr13	18797551	18797751	+	575.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172120, intron 7 of 28)	RMER1B|Other|Other	80359.0	NM_172120	218035.0	Mm.27389	NM_172120	ENSMUSG00000041236	Vps41	AI317346|Vam2|mVam2	VPS41 HOPS complex subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125445476-4	chr6	125445363	125445563	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR85a|LTR|Gypsy?	49297.0	NM_007657	12527.0	Mm.210676	NM_007657	ENSMUSG00000030342	Cd9	Tspan29	CD9 antigen	protein-coding	3.70864289695758	4.30435014753571	4.99120152262522	4.43123129002379	3.51436948017905	5.1373210414487	4.62974611909521	4.35384266595425	0.111219225284602	0.810178316484197	0.998431161219273
Merged-chr8-71669632-2	chr8	71669486	71669686	+	748.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_001029873, intron 1 of 41)	RSINE1|SINE|B4	2171.0	NM_001029873	382018.0	Mm.334606	NM_001029873	ENSMUSG00000034799	Unc13a	2410078G03Rik|Munc13-1	unc-13 homolog A (C. elegans)	protein-coding	-0.664543027923147	-0.651054636905989	-0.655444676145812	0.292300770284149	-0.663693266365073	-0.650068876850928	-0.45175528859257	-0.658254591312759	-2.63575197769654	0.341016142157045	1
Merged-chr3-119783134-6	chr3	119783114	119783314	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_019550, exon 1 of 14)	5' UTR (NM_019550, exon 1 of 14)	174.0	NM_001310711	56195.0	Mm.29966	NM_019550	ENSMUSG00000028134	Ptbp2	Ptb2|brPTB|nPTB	polypyrimidine tract binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-62183758-2	chr10	62183658	62183858	+	584.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10469.0	NR_106122	102465767.0		NR_106122	ENSMUSG00000099185	Mir7662	Gm27876|mmu-mir-7662	microRNA 7662	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-125426522-3	chr1	125426414	125426614	+	878.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205386, intron 2 of 12)	URR1A|DNA|hAT-Charlie	9213.0	NM_001205386	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-121277736-4	chr9	121277634	121277834	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177589)	promoter-TSS (NM_177589)	-562.0	NM_177589	209012.0	Mm.371804	NM_177589	ENSMUSG00000040936	Ulk4	4932415A06Rik|A730098P15	unc-51-like kinase 4	protein-coding	2.45301402872686	2.56406468981861	1.57105857189459	2.74610719988454	1.96170462491456	2.78037204058641	1.32214282204324	2.06229110106108	-0.596722067042643	0.531043364823816	0.950654387632934
Merged-chr4-141382508-2	chr4	141382408	141382608	+	711.833374	f1_balb.idr|f1_c57bl6.idr	exon (NM_001085513, exon 5 of 7)	exon (NM_001085513, exon 5 of 7)	14316.0	NM_001085513	277743.0	Mm.294614	NM_001085513	ENSMUSG00000006218	Fam131c	Gm693	family with sequence similarity 131, member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-49035955-4	chr6	49035864	49036064	+	788.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053110)	promoter-TSS (NM_053110)	-554.0	NM_053110	93695.0	Mm.302602	NM_053110	ENSMUSG00000029816	Gpnmb	DC-HIL|Dchil|ipd	glycoprotein (transmembrane) nmb	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-70968634-4	chr12	70968556	70968756	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-5967.0	NM_001310595	19167.0	Mm.296338	NM_011184	ENSMUSG00000060073	Psma3	Lmpc8	proteasome (prosome, macropain) subunit, alpha type 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-69669953-2	chr18	69669853	69670053	+	549.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 15 of 19)	intron (NM_001361128, intron 15 of 19)	-255606.0	NM_201362	381175.0	Mm.266831	NM_201362	ENSMUSG00000038903	Ccdc68	BC046343	coiled-coil domain containing 68	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44916460-2	chr9	44916360	44916560	+	790.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013795, intron 1 of 2)	B3A|SINE|B2	4282.0	NM_013795	27425.0	Mm.14663	NM_013795	ENSMUSG00000038717	Atp5l	4933437C06Rik	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit G	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-121248193-3	chr9	121248091	121248291	+	654.0	f0_balb.idr|f0_c57.idr|f1_balb.idr	intron (NM_177589, intron 16 of 36)	intron (NM_177589, intron 16 of 36)	28981.0	NM_177589	209012.0	Mm.371804	NM_177589	ENSMUSG00000040936	Ulk4	4932415A06Rik|A730098P15	unc-51-like kinase 4	protein-coding	2.753036106476	4.07937021166472	3.11775268201689	3.79097614856052	3.51664741221878	2.31619478735897	2.60990787954043	4.15410634879212	-0.254562392618992	0.703514115562138	0.998431161219273
Merged-chr7-87224423-1	chr7	87224323	87224523	+	726.0	f1_balb.idr	Intergenic	Lx7|LINE|L1	-22226.0	NM_001285835	50490.0	Mm.31748	NM_015760	ENSMUSG00000030562	Nox4	AI648021	NADPH oxidase 4	protein-coding	-1.24900173669778	-1.22209922953844	-1.23260730456294	-1.24123895025716	-0.973140129410997	-0.88914210142926	-1.23022850670784	-1.23969388980479	2.48739720405528	0.449861323143152	1
Merged-chr4-129774920-3	chr4	129774824	129775024	+	648.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32621.0	NR_045036	20218.0	Mm.8256	NM_011317	ENSMUSG00000028790	Khdrbs1	Sam68|p62|p68	KH domain containing, RNA binding, signal transduction associated 1	protein-coding	-1.17367364971587	-1.14665061133654	-1.15856004380685	-1.16834280623128	-1.17310571790619	-1.14406978763884	-0.42938571406771	-1.16659169643457	2.89727187181404	0.396361616615464	1
Merged-chr11-77494079-6	chr11	77493945	77494145	+	789.532837	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004144, intron 1 of 19)	intron (NM_001004144, intron 1 of 19)	633.0	NM_001004144	216963.0	Mm.290182	NM_001004144	ENSMUSG00000011877	Git1	Cat-1|p95Cat	G protein-coupled receptor kinase-interactor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-68046009-1	chr3	68045909	68046109	+	543.0	f0_balb.idr	intron (NM_001113419, intron 2 of 10)	intron (NM_001113419, intron 2 of 10)	-18793.0	NM_001113420	30953.0	Mm.331064	NM_013928	ENSMUSG00000027777	Schip1	Nf2ip|Schip-1	schwannomin interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-27937313-1	chr3	27937213	27937413	+	565.0	f0_balb.idr	Intergenic	Intergenic	-1367.0	NM_001164056	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76430577-2	chr15	76430477	76430677	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162489, intron 21 of 30)	ORR1F|LTR|ERVL-MaLR	-2637.0	NR_105919	102465576.0		NR_105919	ENSMUSG00000099260	Mir6954	Gm27770|mmu-mir-6954	microRNA 6954	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-95369527-2	chr10	95369427	95369627	+	835.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33251.0	NR_045337	69629.0	Mm.250542	NR_045337	ENSMUSG00000100550	2310039L15Rik	A53T-syn|G2-3|PrPsynA53T|Tg(Prnp-SNCA*A53T)23Mkle	RIKEN cDNA 2310039L15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-19301425-4	chr2	19301296	19301496	+	843.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271565, intron 17 of 17)	intron (NM_001271565, intron 17 of 17)	-42921.0	NR_126563	108871.0	Mm.107666	NR_126563		4930447M23Rik	-	RIKEN cDNA 4930447M23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-97567847-4	chr13	97567788	97567988	+	976.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_046157, intron 2 of 2)	intron (NR_046157, intron 2 of 2)	7888.0	NR_046157	328314.0	Mm.138047	NR_046157	ENSMUSG00000110235	Gm5086	B230311A21|EG328314	predicted gene 5086	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98792332-2	chr11	98792232	98792432	+	700.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER5A|DNA|hAT-Charlie	-3184.0	NM_001361931	74026.0	Mm.258352	NM_028722	ENSMUSG00000052915	Msl1	2810017F12Rik|4121402D02Rik|4930463F05Rik|AA682082|Msl-1	male specific lethal 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-73177110-4	chr11	73177009	73177209	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025318)	promoter-TSS (NM_025318)	26.0	NM_029564	76281.0	Mm.371656	NM_029564	ENSMUSG00000040158	Tax1bp3	1300011C24Rik|TIP-1	Tax1 (human T cell leukemia virus type I) binding protein 3	protein-coding	5.32260302355468	5.94359274166872	4.68888697240381	5.73601679353106	5.28771145187753	5.56725738983083	5.03299625233203	3.97600599396137	-0.486546489836973	0.197007979909649	0.678964499125615
Merged-chr2-14107883-2	chr2	14107783	14107983	+	660.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011484, intron 2 of 13)	intron (NM_011484, intron 2 of 13)	33783.0	NM_011484	20844.0	Mm.273174	NM_011484	ENSMUSG00000026718	Stam	STAM1	signal transducing adaptor molecule (SH3 domain and ITAM motif) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-70005310-4	chr12	70005205	70005405	+	853.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-18303.0	NM_022028	64010.0	Mm.390480	NM_022028	ENSMUSG00000021067	Sav1	1700040G09Rik|Salv|Sav|WW45|Wwp3|Wwp4	salvador family WW domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-136148714-7	chr4	136148604	136148804	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4882.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-26833122-4	chr8	26832949	26833149	+	843.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8626.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-31128721-1	chr6	31128621	31128821	+	543.0	f1_balb.idr	intron (NR_110471, intron 3 of 3)	intron (NR_110471, intron 3 of 3)	-65628.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-60031208-1	chr2	60031108	60031308	+	686.5	f0_balb.idr	intron (NM_001001182, intron 2 of 35)	intron (NM_001001182, intron 2 of 35)	94532.0	NM_001001182	407823.0	Mm.228071	NM_001001182	ENSMUSG00000026987	Baz2b	5830435C13Rik|BC053917|D2Ertd794e	bromodomain adjacent to zinc finger domain, 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-121345092-2	chr3	121344992	121345192	+	829.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_155539, intron 2 of 2)	PB1D10|SINE|Alu	53352.0	NM_024178	66789.0	Mm.269881	NM_024178	ENSMUSG00000039887	Alg14	5430428G01Rik|AI854024	asparagine-linked glycosylation 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-19894779-4	chr4	19894688	19894888	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175406, intron 2 of 7)	L1MC3|LINE|L1	27778.0	NM_175406	242341.0	Mm.19298	NM_175406	ENSMUSG00000028238	Atp6v0d2	1620401A02Rik|AI324824|V-ATPase	ATPase, H+ transporting, lysosomal V0 subunit D2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-90077035-4	chr9	90076958	90077158	+	822.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_007801)	TTS (NM_007801)	22791.0	NM_001312649	13036.0	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-9173469-1	chr5	9173369	9173569	+	593.0	f1_balb.idr	Intergenic	Intergenic	-11693.0	NR_152861	23857.0	Mm.22480	NM_011806	ENSMUSG00000042508	Dmtf1	Dimp|Dmp1	cyclin D binding myb-like transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-65696863-1	chr18	65696763	65696963	+	555.0	f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-1405.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	2.08160565263811	2.56421700167286	1.35528363837568	2.19222915779808	2.09860650096761	2.0567795172246	2.49701992701255	2.75545421443676	0.622966518801126	0.493747103372744	0.935679785535167
Merged-chr10-20349121-4	chr10	20349012	20349212	+	964.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027930, intron 2 of 6)	MTC|LTR|ERVL-MaLR	1293.0	NM_027930	71804.0	Mm.262151	NM_027930	ENSMUSG00000019992	Mtfr2	2610016C23Rik|4933412C16Rik|Dufd1|Fam54a	mitochondrial fission regulator 2	protein-coding	3.80503543383265	3.98196345661974	2.48559807425769	3.804443766795	3.59470682965139	2.7657088350538	2.32846308781703	1.52336612376132	-1.35699944823619	0.0683362508368533	0.392170760940959
Merged-chr5-64780980-4	chr5	64780876	64781076	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22547.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129987894-4	chr4	129987817	129988017	+	935.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199696, intron 1 of 28)	CpG	2839.0	NM_173071	230775.0	Mm.262241	NM_173071	ENSMUSG00000028782	Adgrb2	Bai2	adhesion G protein-coupled receptor B2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-60373884-2	chr10	60373784	60373984	+	540.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252635, intron 37 of 68)	intron (NM_001252635, intron 37 of 68)	-25842.0	NM_001164374	100302688.0	Mm.444135	NM_001164374	ENSMUSG00000090439	Gm17455	-	predicted gene, 17455	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16273481-4	chr7	16273377	16273577	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001136471)	TTS (NM_001136471)	215.0	NM_001136270	66300.0	Mm.218698	NM_001136270	ENSMUSG00000091811	Inafm1	2610014I16Rik|Prr24	InaF motif containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27232535-4	chr2	27232435	27232635	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138665, intron 8 of 20)	intron (NM_138665, intron 8 of 20)	14768.0	NM_138665	192166.0	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-21636872-4	chr10	21636772	21636972	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43727.0	NR_027968	67692.0	Mm.54306	NM_183266	ENSMUSG00000050844	1700020N01Rik	-	RIKEN cDNA 1700020N01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-9913366-2	chr19	9913266	9913466	+	937.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	IMPB_01|Satellite|Satellite	-13833.0	NM_016692	16319.0	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-111246487-2	chr8	111246387	111246587	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009149, intron 1 of 25)	intron (NM_009149, intron 1 of 25)	12715.0	NM_009149	20340.0	Mm.276271	NM_009149	ENSMUSG00000003316	Glg1	AI593353|AW537898|CFR|CFR-1|ESL-1|MG-160|MG160|Selel	golgi apparatus protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-51418819-4	chr13	51418795	51418995	+	909.6904910000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010101, exon 2 of 2)	exon (NM_010101, exon 2 of 2)	10277.0	NM_010101	13610.0	Mm.136736	NM_010101	ENSMUSG00000067586	S1pr3	AI132464|Edg3|Lpb3|S1p3	sphingosine-1-phosphate receptor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-30252276-4	chr16	30252165	30252365	+	976.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15267.0	NM_027904	71756.0	Mm.290614	NM_027904	ENSMUSG00000023176	Cpn2	1300018K11Rik	carboxypeptidase N, polypeptide 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-35055590-2	chr7	35055490	35055690	+	665.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009884, intron 1 of 1)	intron (NM_009884, intron 1 of 1)	976.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-66250254-4	chr7	66250156	66250356	+	844.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	131468.0	NR_106024	102465640.0		NR_106024	ENSMUSG00000098353	Mir7057	Gm27550|mmu-mir-7057	microRNA 7057	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-69220774-2	chr17	69220674	69220874	+	985.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355736, intron 3 of 21)	intron (NM_001355736, intron 3 of 21)	56432.0	NR_045428	69750.0	Mm.439063	NR_045428	ENSMUSG00000100572	2410021H03Rik	-	RIKEN cDNA 2410021H03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129582277-2	chr2	129582161	129582361	+	661.0	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-10578.0	NM_001291020	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	1.63085382604044	0.984430383209023	0.955035851998885	1.403295779037	2.83786163370482	1.88378442915712	0.961643159930922	2.60332741019302	2.66261332476202	0.0281071315833102	0.226632637591772
Merged-chr5-110613604-1	chr5	110613504	110613704	+	542.0	f0_balb.idr	intron (NR_104449, intron 1 of 5)	ORR1D2|LTR|ERVL-MaLR	10099.0	NR_104449	231605.0	Mm.275748	NM_198306	ENSMUSG00000033316	Galnt9	GalNAc-T9	polypeptide N-acetylgalactosaminyltransferase 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-103754852-2	chr2	103754752	103754952	+	878.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153126, intron 3 of 28)	intron (NM_153126, intron 3 of 28)	6418.0	NM_153126	98956.0	Mm.288005	NM_153126	ENSMUSG00000027185	Nat10	AI429152	N-acetyltransferase 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-102409269-1	chr11	102409169	102409369	+	610.0	f0_balb.idr	Intergenic	B1F|SINE|Alu	-1752.0	NM_026542	68066.0	Mm.44226	NM_026542	ENSMUSG00000018677	Slc25a39	3010027G13Rik|D11Ertd333e	solute carrier family 25, member 39	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53157445-4	chr4	53157342	53157542	+	943.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 1 of 49)	intron (NM_013454, intron 1 of 49)	2453.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-52892094-4	chr2	52892099	52892299	+	798.071411	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	34331.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-16565931-3	chr16	16565828	16566028	+	740.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301817, intron 1 of 16)	MTD|LTR|ERVL-MaLR	-5709.0	NM_139232	224014.0	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-116951113-4	chr8	116951016	116951216	+	947.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177700, intron 1 of 3)	intron (NM_177700, intron 1 of 3)	7723.0	NM_177700	234776.0	Mm.259736	NM_177700	ENSMUSG00000047388	Atmin	Asciz|gpg6|mKIAA0431	ATM interactor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-36654114-2	chr16	36654014	36654214	+	969.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019388, intron 1 of 7)	intron (NM_019388, intron 1 of 7)	11963.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-25000333-3	chr19	25000221	25000421	+	682.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028785, intron 1 of 47)	intron (NM_028785, intron 1 of 47)	792.0	NM_028785	76088.0	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	2.04643400866873	1.73693024762784	1.52589640642835	1.48811846924636	2.13925969105296	1.74940727806165	1.94951966056368	1.11107520803953	0.233967135066513	0.830488167714448	0.998431161219273
Merged-chr19-55903338-2	chr19	55903238	55903438	+	564.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001142924, intron 1 of 11)	intron (NM_001142924, intron 1 of 11)	8017.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-131982776-4	chr2	131982671	131982871	+	782.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31734.0	NM_001278520	26434.0	Mm.180750	NM_023043	ENSMUSG00000027338	Prnd	AI450264|Dpl|PrPLP|doppel	prion like protein doppel	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-121954113-2	chr8	121954027	121954227	+	789.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016812, intron 1 of 13)	intron (NM_016812, intron 1 of 13)	3635.0	NM_001285983	53325.0	Mm.287163	NM_016812	ENSMUSG00000025316	Banp	AA408158|SMAR1	BTG3 associated nuclear protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-76384644-5	chr13	76384455	76384655	+	943.209534	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030174)	promoter-TSS (NM_030174)	-406.0	NM_030174	78771.0	Mm.316249	NM_030174	ENSMUSG00000021596	Mctp1	2810465F10Rik	multiple C2 domains, transmembrane 1	protein-coding	0.706062935216507	-0.0750277236818697	-0.0804481587105638	-0.084636961492318	0.492146901995805	-0.0738071802262272	0.105931848602643	-0.0839047432079585	-0.297554153640603	0.896995968398746	1
Merged-chr2-33962975-3	chr2	33962912	33963112	+	832.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-75066.0	NM_175184	72543.0	Mm.254914	NM_175184	ENSMUSG00000038740	Mvb12b	2610200O14Rik|2610528K11Rik|AI414895|Fam125b	multivesicular body subunit 12B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84800454-4	chr8	84800356	84800556	+	995.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010906)	promoter-TSS (NM_010906)	-118.0	NM_001081982	18032.0	Mm.9394	NM_010906	ENSMUSG00000001911	Nfix	CTF|NF-I/X|NF1-X|NFI-X	nuclear factor I/X	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-149454439-2	chr5	149454339	149454539	+	933.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029464, intron 3 of 6)	intron (NM_029464, intron 3 of 6)	14779.0	NM_001310765	75860.0	Mm.159605	NM_029464	ENSMUSG00000029660	Tex26	4930588N13Rik	testis expressed 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-125458708-4	chr1	125458601	125458801	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22974.0	NM_001205385	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-68655861-4	chr14	68655773	68655973	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183366)	promoter-TSS (NM_183366)	-31.0	NM_183366	13522.0	Mm.117450	NM_010082	ENSMUSG00000014725	Adam28	C130072N01Rik|D430033C21Rik|Dtgn1|MDC-L|MDCL|TECADAM|eMDCII	a disintegrin and metallopeptidase domain 28	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-118674863-4	chr14	118674784	118674984	+	928.783325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163676, intron 1 of 29)	intron (NM_001163676, intron 1 of 29)	2047.0	NM_001163675	239273.0	Mm.40537	NM_001033336	ENSMUSG00000032849	Abcc4	ABCC4-N1|D630049P08Rik|MOATB|MRP4	ATP-binding cassette, sub-family C (CFTR/MRP), member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-116693751-4	chr6	116693646	116693846	+	974.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_178768, exon 5 of 5)	3' UTR (NM_178768, exon 5 of 5)	-19910.0	NM_178045	213391.0	Mm.257931	NM_178045	ENSMUSG00000042129	Rassf4	3830411C14Rik|AD037|AI586137	Ras association (RalGDS/AF-6) domain family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-33673836-4	chr8	33673738	33673938	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010344, intron 4 of 12)	intron (NM_010344, intron 4 of 12)	20600.0	NM_010344	14782.0	Mm.283573	NM_010344	ENSMUSG00000031584	Gsr	AI325518|D8Ertd238e|Gr-1|Gr1	glutathione reductase	protein-coding	4.14434775013392	2.98693596637608	3.35360219123682	3.18050247711048	2.7737347792451	3.00970426479432	1.88787370507205	2.41404984353372	-1.57891698948788	0.0210424901307714	0.185729129418094
Merged-chr9-110708856-2	chr9	110708756	110708956	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028312, intron 3 of 6)	intron (NM_028312, intron 3 of 6)	33754.0	NM_001083936	19228.0	Mm.3542	NM_011199	ENSMUSG00000032492	Pth1r	PPR|Pthr|Pthr1	parathyroid hormone 1 receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-84195344-4	chr12	84195244	84195444	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163501, intron 1 of 12)	intron (NM_001163501, intron 1 of 12)	-1329.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-116156771-3	chr9	116156666	116156866	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029575, intron 1 of 6)	intron (NM_029575, intron 1 of 6)	18597.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	3.59779695762469	2.27726312243744	3.83984921641735	4.0769109161007	4.96077752082965	5.08060620579682	5.25336466543029	4.86873465867658	1.84363839338984	2.57788183853598e-05	0.000999873695002845
Merged-chr17-5711547-4	chr17	5711460	5711660	+	976.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 3 of 8)	intron (NM_146073, intron 3 of 8)	-87097.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19473163-3	chr7	19473068	19473268	+	619.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-14674.0	NM_172279	232944.0	Mm.260504	NM_172279	ENSMUSG00000030397	Mark4	2410090P21Rik|C79806|Markl1	MAP/microtubule affinity regulating kinase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-38279124-2	chr15	38279024	38279224	+	573.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20776.0	NM_001357677	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-79759056-4	chr18	79758956	79759156	+	994.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-287839.0	NM_053117	93737.0	Mm.24678	NM_053117	ENSMUSG00000056214	Pard6g	2410049N21Rik|Par6a	par-6 family cell polarity regulator gamma	protein-coding	2.361736544514	1.95236148335058	2.78625070412442	2.10201282766598	1.89392328483528	1.78745585215009	1.28967783067158	2.22476519215894	-1.26705215390676	0.185153310168611	0.660853724068152
Merged-chr1-85598793-4	chr1	85598682	85598882	+	891.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030194)	promoter-TSS (NM_030194)	28.0	NM_030194	109032.0	Mm.335802	NM_030194	ENSMUSG00000070034	Sp110	5031415C07Rik|52kDa|5830484A20Rik|Ifi75|Ipr1	Sp110 nuclear body protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-95506615-2	chr9	95506515	95506715	+	614.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357977, intron 1 of 25)	URR1B|DNA|hAT-Charlie	5381.0	NM_001357975	67958.0	Mm.292742	NM_026476	ENSMUSG00000032407	U2surp	2610101N10Rik|AU023006|Sr140	U2 snRNP-associated SURP domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97830911-2	chr6	97830811	97831011	+	622.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113198, intron 1 of 9)	intron (NM_001113198, intron 1 of 9)	23853.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-136828853-2	chr6	136828753	136828953	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178776)	promoter-TSS (NM_178776)	10.0	NM_178776	320135.0	Mm.386899	NM_178776	ENSMUSG00000047515	BC049715	-	cDNA sequence BC049715	protein-coding	1.92357076241966	2.32658528824979	1.41986599787297	3.17029540788327	2.53047361392373	3.02846565709914	2.40540001047246	2.66089873675151	0.567227063788253	0.513433234353543	0.94619324199876
Merged-chr15-98664423-3	chr15	98664326	98664526	+	871.5833130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1537.0	NM_001080981	74351.0	Mm.45725	NM_001080981	ENSMUSG00000003360	Ddx23	3110082M05Rik|4921506D17Rik	DEAD (Asp-Glu-Ala-Asp) box polypeptide 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-105911784-2	chr11	105911684	105911884	+	679.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_181071, intron 20 of 25)	intron (NM_181071, intron 20 of 25)	32703.0	NM_007805	13056.0	Mm.149403	NM_007805	ENSMUSG00000019590	Cyb561	-	cytochrome b-561	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-64150348-2	chr13	64150248	64150448	+	657.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361047, intron 1 of 5)	intron (NM_001361047, intron 1 of 5)	2025.0	NM_001361047	238673.0	Mm.300065	NM_175494	ENSMUSG00000044934	Zfp367	8030486J21Rik|ZFF29a|ZFF29b|Znf367	zinc finger protein 367	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30177958-2	chr2	30177858	30178058	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_172660, exon 2 of 12)	exon (NM_172660, exon 2 of 12)	501.0	NM_172660	227695.0	Mm.4449	NM_172660	ENSMUSG00000039660	Spout1	9930028P05|AL033358|CENP-32|D2Wsu81e	SPOUT domain containing methyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-13970625-2	chr18	13970525	13970725	+	732.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360804, intron 2 of 7)	CpG	2108.0	NM_001360804	225207.0	Mm.40325	NM_145492	ENSMUSG00000024420	Zfp521	B930086A16Rik|Evi3|Znf521	zinc finger protein 521	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-143005339-2	chr7	143005239	143005439	+	931.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001128082)	promoter-TSS (NM_001128082)	293.0	NM_001128080	27027.0	Mm.28172	NM_020286	ENSMUSG00000000244	Tspan32	AW208513|Art-1|BB235973|D7Wsu37e|Phemx|Tssc6	tetraspanin 32	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-121228771-2	chr11	121228645	121228845	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_001252549, intron 1 of 6)	intron (NM_001252549, intron 1 of 6)	195.0	NM_001254735	217370.0	Mm.27182	NM_144832	ENSMUSG00000039294	BC017643	-	cDNA sequence BC017643	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-150839084-2	chr2	150838984	150839184	+	829.333313	f1_balb.idr|f1_c57bl6.idr	intron (NR_151505, intron 7 of 12)	intron (NR_151505, intron 7 of 12)	3486.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-29365520-2	chr19	29365420	29365620	+	983.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1918.0	NM_021893	60533.0	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-84750901-2	chr6	84750801	84751001	+	746.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177077, intron 19 of 21)	intron (NM_177077, intron 19 of 21)	-156993.0	NM_001177713	232174.0	Mm.255246	NM_175475	ENSMUSG00000063415	Cyp26b1	CP26|P450RAI-2	cytochrome P450, family 26, subfamily b, polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-66700333-4	chr1	66700219	66700419	+	976.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025683)	promoter-TSS (NM_025683)	-512.0	NM_025683	66646.0	Mm.240912	NM_025683	ENSMUSG00000026005	Rpe	2810429B02Rik|5730518J08Rik	ribulose-5-phosphate-3-epimerase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101246244-2	chr11	101246144	101246344	+	980.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019444)	promoter-TSS (NM_019444)	-90.0	NM_019444	54409.0	Mm.260698	NM_019444	ENSMUSG00000001240	Ramp2	-	receptor (calcitonin) activity modifying protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47295946-4	chr17	47295813	47296013	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001097623, intron 5 of 19)	intron (NM_001097623, intron 5 of 19)	65683.0	NM_172622	224829.0	Mm.260989	NM_172622		Trerf1	9430096I18Rik|AI429294|B830015H24|RAPA|Trep-132|Trep132	transcriptional regulating factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71005743-1	chr17	71005643	71005843	+	1000.0	f1_c57bl6.idr	Intergenic	RMER12|LTR|ERVK	-3210.0	NM_026064	67268.0	Mm.489605	NM_026064	ENSMUSG00000024048	Myl12a	2900073G15Rik|AI838292|C80200	myosin, light chain 12A, regulatory, non-sarcomeric	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-33956730-2	chr17	33956647	33956847	+	807.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357329, intron 1 of 19)	intron (NM_001357329, intron 1 of 19)	657.0	NM_001357329	224705.0	Mm.448614	NM_172620	ENSMUSG00000024319	Vps52	ARE1|D130068D18|D430041K17Rik|SAC2|Sacm2l|tclw5	VPS52 GARP complex subunit	protein-coding	-0.0731797002145116	0.13451246177138	-0.0626644516392472	0.355621245576847	-0.0722036695214086	0.139292536837957	-0.0615341076257068	0.653336775342785	0.808240386032338	0.709529594578405	1
Merged-chr16-75961255-4	chr16	75961148	75961348	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39536.0	NR_155447	102632240.0	Mm.417237	NR_155447	ENSMUSG00000087214	Gm15555	-	predicted gene 15555	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-55398438-3	chr4	55398375	55398575	+	730.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20367.0	NR_040674	100415914.0	Mm.261765	NR_040674	ENSMUSG00000087070	Gm12505	-	predicted gene 12505	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-16164815-2	chr4	16164715	16164915	+	547.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045765, intron 1 of 6)	intron (NR_045765, intron 1 of 6)	705.0	NR_045765	100415915.0	Mm.387180	NR_045765	ENSMUSG00000085112	A530072M11Rik	-	RIKEN cDNA gene A530072M11	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-79674444-4	chr11	79674367	79674567	+	870.7333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045898, exon 2 of 3)	non-coding (NR_045898, exon 2 of 3)	619.0	NR_045898	72218.0	Mm.443271	NR_045898	ENSMUSG00000086569	Rab11fip4os2	1700020F10Rik|4930542H20Rik|Rab11fib4os2	RAB11 family interacting protein 4 (class II), opposite strand 2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-69371656-2	chr10	69371556	69371756	+	753.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18744.0	NM_007659	12534.0	Mm.281367	NM_007659	ENSMUSG00000019942	Cdk1	Cdc2|Cdc2a|p34<CDC2>	cyclin-dependent kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-103840601-3	chr14	103840454	103840654	+	860.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276296, intron 1 of 7)	intron (NM_001276296, intron 1 of 7)	3147.0	NM_007904	13618.0	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30252846-1	chr7	30252746	30252946	+	652.0	f1_c57bl6.idr	intron (NR_152437, intron 15 of 32)	intron (NR_152437, intron 15 of 32)	-16081.0	NM_001289817	381867.0	Mm.483986	NM_001289817	ENSMUSG00000100512	Ovol3	Gm1903|movo3	ovo like zinc finger 3	protein-coding	0.636756434705155	0.634593286809459	1.03779551774101	0.26649833835727	0.534110154884191	0.477948268549073	0.273159051647295	0.267404108812306	-1.9318738354457	0.293387140192135	1
Merged-chr19-5084744-2	chr19	5084676	5084876	+	795.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001885, intron 1 of 1)	intron (NM_001001885, intron 1 of 1)	701.0	NM_001001885	381199.0	Mm.329663	NM_001001885	ENSMUSG00000061451	Tmem151a	AW125688|Gm961|Tmem151	transmembrane protein 151A	protein-coding	0.877581769231694	0.521812843209379	1.08624130542086	0.937197120640545	1.15805435946276	0.523601384197383	0.515621593946497	0.819547880933339	-0.430655233147902	0.793894778101785	1
Merged-chr7-144917659-1	chr7	144917559	144917759	+	651.0	f1_balb.idr	exon (NM_001347537, exon 3 of 4)	exon (NM_001347537, exon 3 of 4)	2559.0	NM_001347537	72284.0	Mm.273049	NM_028184	ENSMUSG00000031072	Oraov1	2210010N10Rik|TAOS1	oral cancer overexpressed 1	protein-coding	1.49608597650499	0.723594566503843	0.707277316082198	1.49297708968981	0.675637462784946	1.50151592966607	0.710914259499522	2.01866162954235	0.6807259585047	0.659637726315497	0.989539064807868
Merged-chr7-19277472-2	chr7	19277372	19277572	+	780.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177691, intron 4 of 4)	B2_Mm2|SINE|B2	2577.0	NM_177691	232941.0	Mm.134068	NM_177691	ENSMUSG00000030402	Ppm1n	A930002H20|C79127	protein phosphatase, Mg2+/Mn2+ dependent, 1N (putative)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-104714446-4	chr3	104714376	104714576	+	815.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	63071.0	NM_183224	329731.0	Mm.389494	NM_183224	ENSMUSG00000055865	Fam19a3	7530404M11Rik|Sam3|TAFA3|Tafa-3	family with sequence similarity 19, member A3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-8643280-3	chr15	8643152	8643352	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_148938, intron 6 of 9)	(A)n|Simple_repeat|Simple_repeat	67555.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-102572264-4	chr4	102572165	102572365	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019840, intron 6 of 14)	intron (NM_019840, intron 6 of 14)	2205.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133675918-4	chr4	133675801	133676001	+	863.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2735.0	NM_001356466	230801.0	Mm.217004	NM_178698	ENSMUSG00000043257	Pigv	B330013B03|D430024F16Rik	phosphatidylinositol glycan anchor biosynthesis, class V	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-66139096-2	chr7	66138996	66139196	+	700.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081163, intron 2 of 2)	intron (NM_001081163, intron 2 of 2)	29581.0	NM_001081163	269941.0	Mm.333916	NM_001081163	ENSMUSG00000032640	Chsy1	mKIAA0990	chondroitin sulfate synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-7269421-3	chr10	7269326	7269526	+	847.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57189.0	NM_172546	215748.0	Mm.37984	NM_172546	ENSMUSG00000015202	Cnksr3	6820402C05|BC024086|Magi1	Cnksr family member 3	protein-coding	0.114886426837236	-0.119924462727324	-0.124201558352167	0.156115719096159	-0.132111165864618	-0.118957551272993	0.419940828073563	0.160414219797837	0.809008410520782	0.714843371589798	1
Merged-chr7-144939805-4	chr7	144939709	144939909	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_007631, exon 1 of 5)	5' UTR (NM_007631, exon 1 of 5)	116.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	3.16053109266409	2.87200631624093	2.97179564734862	2.34001706647535	2.36885239101368	2.50537987713046	2.68704645708489	2.98955036999081	-0.418048861048582	0.554873769536273	0.959914380895535
Merged-chr13-65241041-4	chr13	65240976	65241176	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-35360.0	NM_175290	97895.0	Mm.315815	NM_175290	ENSMUSG00000032999	Nlrp4f	C330026N02Rik|C86045|Nalp-kappa|Nalp4f	NLR family, pyrin domain containing 4F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-14391149-1	chr10	14391049	14391249	+	774.0	f0_balb.idr	Intergenic	Intergenic	153887.0	NM_001002268	215798.0	Mm.440142	NM_001002268	ENSMUSG00000039116	Adgrg6	1190004A11Rik|AI449247|AW045736|DREG|Gm222|Gpr126	adhesion G protein-coupled receptor G6	protein-coding	1.52761533816421	1.47800754400088	0.88918216231701	1.96585773865319	1.72051809493018	1.13883402503335	1.28521103644052	0.879395963550929	-0.79971079461262	0.542029880703423	0.954866069207078
Merged-chr7-7188090-7	chr7	7187935	7188135	+	808.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16682.0	NM_146179	232854.0	Mm.184857	NM_146179	ENSMUSG00000034538	Zfp418	A230102I05Rik	zinc finger protein 418	protein-coding	1.25362748779535	1.12162018746338	1.75095548316129	1.31846942540766	1.99670100182787	2.13907996320636	3.03145371149485	2.10895475923929	2.84175651177474	0.00782665249744842	0.0917032975238146
Merged-chr6-147606901-2	chr6	147606795	147606995	+	727.5	f0_balb.idr|f1_balb.idr	exon (NM_025911, exon 12 of 13)	exon (NM_025911, exon 12 of 13)	-83346.0	NR_033636	100039727.0	Mm.396220	NR_033636	ENSMUSG00000085077	1700049E15Rik	Gm15761	RIKEN cDNA 1700049E15 gene	ncRNA	1.99775376351031	1.04481298166292	1.25809595491924	1.56674066785528	2.41557605026003	1.83498130954765	1.02803256628883	1.83208388551073	1.01564169800909	0.396131949066375	0.883276804275027
Merged-chr8-66436096-2	chr8	66435996	66436196	+	922.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175188, intron 6 of 7)	intron (NM_175188, intron 6 of 7)	49795.0	NM_001166375	72925.0	Mm.380457	NM_175188	ENSMUSG00000036469	March1	2900024D24Rik|BB085186	membrane-associated ring finger (C3HC4) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5924124-4	chr19	5924071	5924271	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026772, intron 1 of 1)	intron (NM_026772, intron 1 of 1)	645.0	NM_026772	104252.0	Mm.491103	NM_026772	ENSMUSG00000045664	Cdc42ep2	1110008C05Rik|Borg1|Cep2|D19Bwg1013e	CDC42 effector protein (Rho GTPase binding) 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-8413274-2	chr15	8413174	8413374	+	694.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_201232, intron 1 of 45)	intron (NM_201232, intron 1 of 45)	31189.0	NM_027707	71175.0	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	NIPBL cohesin loading factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-75505725-2	chr10	75505625	75505825	+	771.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	11656.0	NM_175133	68778.0	Mm.29382	NM_175133	ENSMUSG00000033416	Gucd1	1110038D17Rik	guanylyl cyclase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97408342-5	chr11	97408219	97408419	+	819.806702	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41841.0	NM_021493	58996.0	Mm.394118	NM_021493	ENSMUSG00000049807	Arhgap23	A330041B18Rik	Rho GTPase activating protein 23	protein-coding	2.33105962246108	2.3474192677606	1.72864018106147	2.45583576586708	3.14646736076451	2.9452350959773	2.42396797974297	2.35008861488888	1.1075624423622	0.163109687561604	0.625636199285205
Merged-chr10-34267543-4	chr10	34267452	34267652	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14638.0	NM_009433	22110.0	Mm.20445	NM_009433	ENSMUSG00000047514	Tspyl1	Tspyl	testis-specific protein, Y-encoded-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116847404-1	chr11	116847304	116847504	+	647.0	f1_balb.idr	intron (NM_028865, intron 1 of 4)	ID_B1|SINE|B4	3889.0	NM_028865	74319.0	Mm.429312	NM_028865	ENSMUSG00000090266	Mettl23	1110005A03Rik|1500035B17Rik|4933424L15Rik	methyltransferase like 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152555217-4	chr1	152555112	152555312	+	897.966675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 5 of 17)	intron (NM_016846, intron 5 of 17)	70005.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135170649-2	chr5	135170549	135170749	+	791.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009745, intron 1 of 5)	intron (NM_009745, intron 1 of 5)	2277.0	NM_009745	12054.0	Mm.405834	NM_009745	ENSMUSG00000029681	Bcl7b	-	B cell CLL/lymphoma 7B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-87155583-4	chr17	87155527	87155727	+	920.529785	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT2B1|LTR|ERVL	39315.0	NR_046016	399626.0	Mm.396062	NR_046016		C330024C12Rik	-	RIKEN cDNA C330024C12 gene	ncRNA	1.78767953127072	1.21226154373341	1.62698111806701	1.58407880644442	2.72605728475461	2.28012756552316	2.08530511946391	1.89467125377932	2.00335173770669	0.0458188370468785	0.308778557618375
Merged-chr9-43106062-4	chr9	43105965	43106165	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027144)	promoter-TSS (NM_027144)	-347.0	NM_027144	69632.0	Mm.275266	NM_027144	ENSMUSG00000059495	Arhgef12	2310014B11Rik|AU019857|Larg|mKIAA0382	Rho guanine nucleotide exchange factor (GEF) 12	protein-coding	4.23186113847333	3.89621976561828	2.32666780522278	4.03131389673116	4.30041064402975	3.58958930104357	3.37112266753471	3.53157799493544	-0.0621449950315822	0.914163226686503	0.998431161219273
Merged-chr1-175660097-1	chr1	175659997	175660197	+	654.0	f0_balb.idr	3' UTR (NM_133809, exon 15 of 15)	3' UTR (NM_133809, exon 15 of 15)	27904.0	NM_133809	98256.0	Mm.27217	NM_133809	ENSMUSG00000039783	Kmo	AI046660	kynurenine 3-monooxygenase (kynurenine 3-hydroxylase)	protein-coding	-1.84329857115688	-1.81314878319164	-1.67880572530269	-1.82975575063909	-1.84118211178869	-1.81117297321283	-1.82020231564948	-1.68495454493044	0.0376840119903871	0.991491645451152	1
Merged-chr11-106460767-2	chr11	106460667	106460867	+	830.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_023913, intron 1 of 21)	intron (NM_023913, intron 1 of 21)	27029.0	NM_023913	78943.0	Mm.340943	NM_023913	ENSMUSG00000020715	Ern1	9030414B18Rik|AI225830|C85377|Ire1a|Ire1alpha|Ire1p	endoplasmic reticulum (ER) to nucleus signalling 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-14347565-2	chr16	14347465	14347665	+	602.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR33|LTR|ERVK	-13993.0	NM_008576	17250.0	Mm.196634	NM_008576	ENSMUSG00000023088	Abcc1	Abcc1a|Abcc1b|MRP|Mdrap|Mrp1	ATP-binding cassette, sub-family C (CFTR/MRP), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81455578-2	chr10	81455478	81455678	+	644.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17553.0	NM_001311127	319586.0	Mm.152689	NM_176954	ENSMUSG00000034818	Celf5	4930565A21Rik|Brunol5	CUGBP, Elav-like family member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-24490656-4	chr14	24490551	24490751	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207635)	promoter-TSS (NM_207635)	-27.0	NM_207635	20088.0	Mm.16775	NM_011297	ENSMUSG00000025290	Rps24	-	ribosomal protein S24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-120729925-2	chr7	120729825	120730025	+	634.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164580, intron 2 of 2)	intron (NM_001164580, intron 2 of 2)	-9632.0	NM_177697	233813.0	Mm.389939	NM_177697	ENSMUSG00000030889	Vwa3a	E030013G06Rik	von Willebrand factor A domain containing 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-31108183-2	chr7	31108083	31108283	+	750.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110252, intron 5 of 13)	intron (NM_001110252, intron 5 of 13)	2814.0	NM_001276269	15451.0	Mm.19182	NM_008281	ENSMUSG00000001249	Hpn	Hlb320	hepsin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-3489843-2	chr8	3489743	3489943	+	623.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-3295.0	NM_080461	140482.0	Mm.299073	NM_080461	ENSMUSG00000047264	Zfp358	Zfend	zinc finger protein 358	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180332526-2	chr1	180332426	180332626	+	703.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081175, exon 2 of 8)	exon (NM_001081175, exon 2 of 8)	-1977.0	NR_003623	277333.0	Mm.389223	NM_199472		Gm5069	EG277333	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-12916275-4	chr17	12916176	12916376	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013686)	promoter-TSS (NM_013686)	-53.0	NM_001290712	21454.0	Mm.229342	NM_013686	ENSMUSG00000068039	Tcp1	AI528772|CCT|Cct1|Ccta|TRic|Tcp-1|Tp63|c-cpn|p63	t-complex protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-53839887-4	chr1	53839754	53839954	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001883, intron 22 of 28)	intron (NM_001001883, intron 22 of 28)	-9570.0	NR_106149	102465783.0		NR_106149	ENSMUSG00000098443	Mir7681	Gm27806|mmu-mir-7681	microRNA 7681	ncRNA	0.973941401693712	0.699941105573431	1.20549191564093	1.16598797468023	1.49354634122841	0.702659365500392	0.690471737346672	1.67055406267166	0.835566150654674	0.577447084632051	0.96585843058813
Merged-chr2-30177237-2	chr2	30177137	30177337	+	728.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_172660, intron 4 of 11)	intron (NM_172660, intron 4 of 11)	1222.0	NM_172660	227695.0	Mm.4449	NM_172660	ENSMUSG00000039660	Spout1	9930028P05|AL033358|CENP-32|D2Wsu81e	SPOUT domain containing methyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-30602998-3	chr16	30602917	30603117	+	817.383362	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_177632)	TTS (NM_177632)	3294.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-32202306-3	chr16	32202204	32202404	+	984.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	22504.0	NM_001033539	328660.0	Mm.441006	NM_001033539	ENSMUSG00000075269	Bex6	B020003O03Rik	brain expressed family member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-79390721-4	chr14	79390620	79390820	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025832)	promoter-TSS (NM_025832)	-52.0	NM_025832	66897.0	Mm.24425	NM_025832	ENSMUSG00000022020	Naa16	1300019C06Rik|Narg1l	N(alpha)-acetyltransferase 16, NatA auxiliary subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-101030279-2	chr9	101030185	101030385	+	612.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001311149, intron 2 of 13)	intron (NM_001311149, intron 2 of 13)	4599.0	NM_001311149	66904.0	Mm.335385	NM_025835	ENSMUSG00000032527	Pccb	1300012P06Rik|AI314687|R74805	propionyl Coenzyme A carboxylase, beta polypeptide	protein-coding	-0.0226456001751389	-0.0042775842992249	0.686539976434319	-0.0149114547547034	0.264545964396381	-0.00292945805321101	0.699400653003722	-0.0140998719779184	0.432257463219047	0.846219334086884	1
Merged-chr3-108858355-2	chr3	108858255	108858455	+	652.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001165965, intron 10 of 11)	intron (NM_001165965, intron 10 of 11)	-17853.0	NM_011504	20912.0	Mm.316894	NM_011504	ENSMUSG00000027882	Stxbp3	Munc-18c|Stxbp3a|Sxtbp3|Unc18-3	syntaxin binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-79683515-2	chr10	79683415	79683615	+	998.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359818, intron 1 of 4)	intron (NM_001359818, intron 1 of 4)	1320.0	NM_001359817	216150.0	Mm.21981	NM_177613	ENSMUSG00000020307	Cdc34	AI327276|E2-CDC34|UBE2R1	cell division cycle 34	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140703658-2	chr5	140703558	140703758	+	806.625	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-1280.0	NM_001347517	74239.0	Mm.179704	NM_028833	ENSMUSG00000036555	Iqce	1700028P05Rik|mKIAA1023	IQ motif containing E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34180711-4	chr17	34180596	34180796	+	864.974976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6634.0	NM_013585	16912.0	Mm.390983	NM_013585	ENSMUSG00000096727	Psmb9	Lmp-2|Lmp2	proteasome (prosome, macropain) subunit, beta type 9 (large multifunctional peptidase 2)	protein-coding	3.72440494488648	3.04458426054116	2.58557586831624	3.40611435800951	3.13471695789442	2.17106227912763	2.73813081955369	2.02917315423509	-1.16685660344541	0.103125860982443	0.500067863816178
Merged-chr4-155223270-4	chr4	155223151	155223351	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011385)	promoter-TSS (NM_011385)	-716.0	NM_001357191	20481.0	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-19929310-4	chr11	19929212	19929412	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033523, intron 1 of 5)	intron (NM_033523, intron 1 of 5)	4870.0	NM_033523	114716.0	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-53969042-2	chr6	53968942	53969142	+	735.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027749, intron 2 of 12)	intron (NM_027749, intron 2 of 12)	9631.0	NM_027749	71287.0	Mm.158654	NM_027749	ENSMUSG00000052955	Cpvl	4933436L16Rik|HVLP	carboxypeptidase, vitellogenic-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-3022204-4	chr9	3022096	3022296	+	990.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GSAT_MM|Satellite|Satellite	16547.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-66073096-4	chr18	66072909	66073109	+	816.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178793, intron 6 of 10)	intron (NM_178793, intron 6 of 10)	-70374.0	NM_001172062	70361.0	Mm.290857	NM_027400	ENSMUSG00000041891	Lman1	2610020P13Rik|AI326273|AU043785|C730041J05|ERGIC53|F5F8D|MCFD1|MR60|P58|gp58	lectin, mannose-binding, 1	protein-coding	-1.23826193677681	-1.21241040182355	-1.22270105026776	-0.934241458926562	-1.23783648736863	-1.21018037537722	-1.22037147302458	-0.929982742503718	0.0323590357436516	0.9924297640193	1
Merged-chr15-98571241-1	chr15	98571141	98571341	+	631.0	f0_balb.idr	TTS (NR_028442)	TTS (NR_028442)	237.0	NM_001201322	73863.0	Mm.66894	NM_001201322	ENSMUSG00000022993	4930415O20Rik	-	RIKEN cDNA 4930415O20 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191098381-4	chr1	191098277	191098477	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030060)	promoter-TSS (NM_030060)	-37.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	2.64055886815696	1.18789396469115	2.13255587258457	1.93091002169934	1.32583111326723	1.48608445515314	3.19737278034395	1.94184962454437	0.361641731161275	0.733117684258517	0.998431161219273
Merged-chr11-74638110-4	chr11	74638017	74638217	+	988.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001013784, exon 4 of 4)	exon (NM_001013784, exon 4 of 4)	-11378.0	NM_001081158	74148.0	Mm.214574	NM_001081158	ENSMUSG00000020741	Cluh	1300001I01Rik|Kiaa0664|mKIAA0664	clustered mitochondria (cluA/CLU1) homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-42000902-1	chr19	42000802	42001002	+	774.0	f1_c57bl6.idr	intron (NM_145500, intron 1 of 2)	intron (NM_145500, intron 1 of 2)	19139.0	NM_145500	226122.0	Mm.22948	NM_145500	ENSMUSG00000025171	Ubtd1	BC016129	ubiquitin domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-97330319-2	chr7	97330219	97330419	+	906.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2004.0	NM_001039039	622320.0	Mm.334029	NM_001039039	ENSMUSG00000044952	Kctd21	EG622320	potassium channel tetramerisation domain containing 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-119896209-1	chr14	119896109	119896309	+	552.0	f1_c57bl6.idr	Intergenic	Intergenic	146226.0	NM_001001490	239283.0	Mm.138520	NM_001001490	ENSMUSG00000044819	Oxgr1	Cysltr3|Gm299|Gpr80|Gpr99|P2Y15	oxoglutarate (alpha-ketoglutarate) receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-138125895-1	chr4	138125795	138125995	+	941.0	f1_c57bl6.idr	exon (NM_172703, exon 12 of 35)	exon (NM_172703, exon 12 of 35)	12623.0	NR_126429	73563.0	Mm.444294	NR_126429	ENSMUSG00000084804	1700095J12Rik	-	RIKEN cDNA 1700095J12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-86206629-4	chr15	86206522	86206722	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7837.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-38860319-3	chr12	38860216	38860416	+	677.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347379, intron 10 of 11)	intron (NM_001347379, intron 10 of 11)	76605.0	NM_001163154	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-87534378-3	chr6	87534290	87534490	+	841.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-1131.0	NM_001286610	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-37718531-4	chr13	37718415	37718615	+	981.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-107523.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-121496208-2	chr10	121496108	121496308	+	608.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19958.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167422678-2	chr2	167422578	167422778	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001304542, intron 1 of 15)	intron (NM_001304542, intron 1 of 15)	968.0	NM_001304542	77031.0	Mm.278924	NM_148929	ENSMUSG00000039463	Slc9a8	1200006P13Rik|6430709P13Rik|AI182282|NHE-8|NHE8	solute carrier family 9 (sodium/hydrogen exchanger), member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-64149949-2	chr1	64149849	64150049	+	786.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-28560.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129342258-3	chr2	129342168	129342368	+	774.5	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27634.0	NR_015474	329514.0	Mm.207315	NM_177848	ENSMUSG00000074805	Il1bos	9430083I22|Gm14047	interleukin 1 beta, opposite strand	ncRNA	2.04820746620534	2.62972797842821	2.53859839621978	2.59046568094726	2.8601475462296	3.81501596834507	3.01036368491259	2.47784758139402	1.25471803729993	0.0827701909102489	0.44032371439898
Merged-chr3-106573384-4	chr3	106573278	106573478	+	967.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025582, intron 6 of 6)	intron (NM_001025582, intron 6 of 6)	-25576.0	NM_133869	99712.0	Mm.429443	NM_133869	ENSMUSG00000040774	Cept1	9930118K05Rik|mCEPT1	choline/ethanolaminephosphotransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-122419978-4	chr3	122419899	122420099	+	904.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_013867, exon 1 of 12)	5' UTR (NM_013867, exon 1 of 12)	242.0	NM_013867	29815.0	Mm.45815	NM_013867	ENSMUSG00000028121	Bcar3	AI131758|AND-34	breast cancer anti-estrogen resistance 3	protein-coding	1.63857294364774	0.786892149944805	2.12857780347975	0.75714705579943	1.46714059614421	1.24081356634068	0.773979221265	1.15521074322511	-1.00432555270937	0.478673275844968	0.928092227925527
Merged-chr15-86205766-2	chr15	86205666	86205866	+	555.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8693.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140762439-2	chr5	140762339	140762539	+	694.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_010302, intron 3 of 3)	intron (NM_010302, intron 3 of 3)	38312.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-17812369-3	chr16	17812273	17812473	+	859.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15091.0	NM_153790	224024.0	Mm.194950	NM_153790	ENSMUSG00000012017	Scarf2	NSR1|SREC-II|SRECRP-1|Scatf1|Srec2|SrecII	scavenger receptor class F, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80782433-4	chr7	80782357	80782557	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016721, intron 2 of 37)	intron (NM_016721, intron 2 of 37)	20874.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	4.17029426077167	5.1669940708937	4.6537450709672	4.1626052477564	4.70524061997014	4.7361651757365	5.08527301584763	4.55433939301251	0.235699018050911	0.536268915821157	0.953323426463389
Merged-chr9-61373049-3	chr9	61372921	61373121	+	886.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001083927, exon 1 of 20)	5' UTR (NM_001083927, exon 1 of 20)	655.0	NM_001083927	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76465702-2	chr15	76465602	76465802	+	628.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_013481, intron 3 of 15)	intron (NM_013481, intron 3 of 15)	8264.0	NM_198885	20289.0	Mm.322821	NM_198885	ENSMUSG00000034161	Scx	BB114693|Bhlha41|Scl	scleraxis	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-110231983-4	chr8	110231859	110232059	+	841.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13999.0	NM_146215	234728.0	Mm.275341	NM_146215	ENSMUSG00000046441	Cmtr2	AU022703|C730036L12Rik|Ftsjd1|MTr2	cap methyltransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-139253640-1	chr4	139253540	139253740	+	665.0	f1_c57bl6.idr	intron (NM_001037761, intron 2 of 9)	intron (NM_001037761, intron 2 of 9)	57068.0	NR_151463	212555.0	Mm.45131	NM_145384	ENSMUSG00000028744	Pqlc2	BC019216	PQ loop repeat containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-3023609-4	chr9	3023586	3023786	+	896.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GSAT_MM|Satellite|Satellite	15057.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-41218072-3	chr8	41217995	41218195	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20B3A_MM|LTR|ERVK	-2939.0	NM_145594	234199.0	Mm.277955	NM_145594	ENSMUSG00000031594	Fgl1	Mfire1	fibrinogen-like protein 1	protein-coding	4.90257229136242	5.19915183856911	3.93775314026163	5.41042736508711	3.13583178666801	3.86530832758257	1.82041037847187	3.76947489877386	-2.12062242107435	7.47732229240154e-05	0.00245953307929122
Merged-chr14-122558970-2	chr14	122558870	122559070	+	555.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_153443, intron 2 of 24)	MLTR25C|LTR|ERVK	24642.0	NM_144844	110821.0	Mm.23876	NM_144844	ENSMUSG00000041650	Pcca	C79630	propionyl-Coenzyme A carboxylase, alpha polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27515152-4	chr2	27515007	27515207	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080848)	promoter-TSS (NM_080848)	-40.0	NM_080848	140858.0	Mm.28265	NM_080848	ENSMUSG00000026917	Wdr5	2410008O07Rik|AA408785|AA960360|Big|Big-3	WD repeat domain 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-148739338-4	chr5	148739229	148739429	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2511.0	NR_028285	70138.0	Mm.417834	NR_028285	ENSMUSG00000086494	2210417A02Rik	AV081004	RIKEN cDNA 2210417A02 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-56615264-4	chr8	56615151	56615351	+	767.983337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	64117.0	NM_015791	50753.0	Mm.251174	NM_015791	ENSMUSG00000038206	Fbxo8	Fbx8	F-box protein 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35418818-2	chr17	35418717	35418917	+	882.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19A|LTR|ERVK	-6030.0	NM_023124	15019.0	Mm.486287	NM_023124		H2-Q8	H-2Q8|MMS10-T|Ms10t|Qa-2|Qa-8|Qa8	histocompatibility 2, Q region locus 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-22934619-4	chr8	22934507	22934707	+	837.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081149, intron 16 of 17)	intron (NM_001081149, intron 16 of 17)	-40229.0	NM_001110783	11733.0	Mm.334444	NM_031158	ENSMUSG00000031543	Ank1	Ank-1|nb|pale	ankyrin 1, erythroid	protein-coding	0.47481331035389	1.44753498513309	1.76896666948209	0.495881027175554	1.67225796813278	0.527091050741266	0.511618467054462	0.498047573141929	-0.914745958183715	0.775772112929881	0.998431161219273
Merged-chr8-108918562-4	chr8	108918462	108918662	+	862.8250119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007496, intron 5 of 9)	intron (NM_007496, intron 5 of 9)	-18298.0	NR_037295	100526511.0		NR_037295	ENSMUSG00000093241	Mir3108	mir-3108|mmu-mir-3108	microRNA 3108	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27527349-2	chr17	27527249	27527449	+	988.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23816.0	NM_001291045	268934.0	Mm.358940	NM_001013385	ENSMUSG00000063239	Grm4	Gprc1d|mGluR4	glutamate receptor, metabotropic 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-32435403-2	chr12	32435331	32435531	+	771.5	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	56642.0	NM_001162903	72123.0	Mm.341352	NM_028111	ENSMUSG00000090946	Ccdc71l	2010109K11Rik|AV375874	coiled-coil domain containing 71 like	protein-coding	-1.06932346315282	-1.04545378193536	-0.220844647149311	-1.06494782147003	-1.06867040657128	-1.04264807175102	-1.05547001227371	-1.06448932552894	-3.08190232315036	0.346744811462451	1
Merged-chr12-54404338-4	chr12	54404248	54404448	+	998.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-13030.0	NR_033689	665239.0	Mm.26856	NR_033689		Gm7550	EG665239|Gm666	predicted gene 7550	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91612085-2	chr16	91611985	91612185	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6914.0	NM_001099738	246738.0	Mm.101927	NM_138664	ENSMUSG00000039763	Dnajc28	BC020175|ORF28	DnaJ heat shock protein family (Hsp40) member C28	protein-coding	1.25605337928657	0.737940739857947	1.4962077869455	1.07345791203758	1.82599554651102	0.740883736694955	0.727675762959433	1.22054424618158	0.224265976158642	0.879074003957349	0.998431161219273
Merged-chr11-101559250-2	chr11	101559150	101559350	+	856.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008676, intron 4 of 23)	intron (NM_008676, intron 4 of 23)	6596.0	NM_001252223	17966.0	Mm.784	NM_008676	ENSMUSG00000017119	Nbr1	mKIAA0049	neighbor of Brca1 gene 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-21638853-2	chr16	21638753	21638953	+	681.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081366, intron 45 of 46)	intron (NM_001081366, intron 45 of 46)	55812.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-67350520-2	chr11	67350420	67350620	+	654.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081250, intron 20 of 38)	intron (NM_001081250, intron 20 of 38)	23417.0	NM_001081250	544791.0	Mm.461064	NM_001081250	ENSMUSG00000060180	Myh13	MyHC-eo	myosin, heavy polypeptide 13, skeletal muscle	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-145740894-4	chr2	145740808	145741008	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033220, intron 3 of 3)	L3|LINE|CR1	39713.0	NR_033220	408057.0	Mm.486711	NR_033220	ENSMUSG00000087594	BC039771	-	cDNA sequence BC039771	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-9642241-4	chr4	9642148	9642348	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290367, intron 1 of 22)	intron (NM_001290367, intron 1 of 22)	1469.0	NM_001177853	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-46607745-3	chr4	46607608	46607808	+	799.027771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198664, intron 10 of 12)	intron (NM_198664, intron 10 of 12)	-5779.0	NM_001164804	107684.0	Mm.416311	NM_178893	ENSMUSG00000028337	Coro2a	9030208C03Rik|AI563590|IR10	coronin, actin binding protein 2A	protein-coding	-0.904249747297078	-0.891753419134594	-0.728862695891082	-0.900895114192795	-0.443020545040677	-0.889184215540582	-0.724696088621523	-0.900540848053183	1.88050477553141	0.515268123192062	1
Merged-chr14-47473096-4	chr14	47472980	47473180	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030236, intron 1 of 1)	CpG	519.0	NM_001146085	78938.0	Mm.11935	NM_030236	ENSMUSG00000037536	Fbxo34	2900057B08Rik|5830426G16Rik	F-box protein 34	protein-coding	4.95104380917128	4.87837758743044	4.53393334552686	5.46496075813544	4.50400123297576	5.19733303436365	4.56750105011755	4.38098691734853	-0.376058059437668	0.3032834585686	0.805462835517226
Merged-chr14-76152265-3	chr14	76152168	76152368	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41377.0	NM_013745	27275.0	Mm.21138	NM_013745	ENSMUSG00000022009	Nufip1	Nufip	nuclear fragile X mental retardation protein interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-144807109-2	chr5	144807009	144807209	+	713.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081362, intron 30 of 70)	intron (NM_001081362, intron 30 of 70)	38317.0	NM_001081362	100683.0	Mm.273570	NM_001081362	ENSMUSG00000045482	Trrap	AI481500	transformation/transcription domain-associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106614451-4	chr11	106614354	106614554	+	999.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1524.0	NM_198292	21763.0	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-147102301-1	chr4	147102201	147102401	+	749.0	f1_balb.idr	Intergenic	CpG	-33865.0	NR_045446	71270.0	Mm.460830	NR_045446	ENSMUSG00000093617	4933438K21Rik	-	RIKEN cDNA 4933438K21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46503623-8	chr19	46503588	46503788	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053100, intron 1 of 5)	intron (NM_053100, intron 1 of 5)	2040.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-152039333-4	chr4	152039228	152039428	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028727)	promoter-TSS (NM_028727)	7.0	NM_028727	74035.0	Mm.275803	NM_028727	ENSMUSG00000028948	Nol9	4632412I24Rik|6030462G04Rik|AI449622|AW490720	nucleolar protein 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-28674863-1	chr12	28674763	28674963	+	793.5	f1_balb.idr	promoter-TSS (NM_134052)	promoter-TSS (NM_134052)	-344.0	NM_134052	104923.0	Mm.291504	NM_134052	ENSMUSG00000020629	Adi1	AL024210|Fe-ARD|MTCBP-1|Ni-ARD	acireductone dioxygenase 1	protein-coding	1.56065005330235	1.45010934543845	0.979943660630436	2.14089814258398	1.78602243017471	1.25620053331186	0.984450692280602	2.22873146193023	0.171702216979544	0.889775160998155	0.998431161219273
Merged-chr3-51251924-1	chr3	51251824	51252024	+	541.0	f1_balb.idr	TTS (NM_009834)	TTS (NM_009834)	-24837.0	NR_073429	67746.0	Mm.441177	NR_073429	ENSMUSG00000087440	4930577N17Rik	-	RIKEN cDNA 4930577N17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-94056194-1	chr1	94056094	94056294	+	567.0	f0_balb.idr	Intergenic	Intergenic	-3641.0	NM_008798	18566.0	Mm.5024	NM_008798	ENSMUSG00000026285	Pdcd1	Ly101|PD-1|Pdc1	programmed cell death 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-145111834-1	chr4	145111734	145111934	+	788.666687	f0_balb.idr	intron (NM_001276465, intron 35 of 69)	intron (NM_001276465, intron 35 of 69)	78832.0	NM_001276502	230895.0	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26464170-2	chr17	26464099	26464299	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44273.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-45117057-3	chr19	45116968	45117168	+	785.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33647.0	NM_021901	21908.0	Mm.391203	NM_021901	ENSMUSG00000025215	Tlx1	Hox-11|Hox11|Tlx-1	T cell leukemia, homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-75542139-3	chr9	75542038	75542238	+	879.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357828, intron 1 of 10)	intron (NM_001357828, intron 1 of 10)	17519.0	NM_016963	50875.0	Mm.38445	NM_016963	ENSMUSG00000058587	Tmod3	U-Tmod|UTMOD	tropomodulin 3	protein-coding	2.06796369451766	2.41968964196476	1.61677532795471	1.86159014513655	1.78385282147909	1.22980889590314	2.05257832420858	1.87092582878763	-0.715900330016382	0.481510134558266	0.929401318280257
Merged-chr10-60341354-4	chr10	60341289	60341489	+	842.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252635, intron 37 of 68)	MTEb|LTR|ERVL-MaLR	-5462.0	NM_001159572	74048.0	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-13559040-4	chr9	13558962	13559162	+	803.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60927.0	NM_001013813	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-82691114-2	chr18	82691014	82691214	+	580.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177832, intron 1 of 29)	(CA)n|Simple_repeat|Simple_repeat	1620.0	NM_177832	329002.0	Mm.34438	NM_177832	ENSMUSG00000041258	Zfp236	AI447957|Gm335	zinc finger protein 236	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-118900467-3	chr2	118900377	118900577	+	777.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1138.0	NM_001045523	228536.0	Mm.330487	NM_001045523	ENSMUSG00000040007	Bahd1	AL022997|AW541238|Gm117|mKIAA0945	bromo adjacent homology domain containing 1	protein-coding	2.0571889103471	1.45994751186303	2.79376044093518	2.5272361078285	2.75202859515356	2.16291193831136	3.12514922956787	2.31318593015025	0.707060826268021	0.410907107002086	0.894256659801134
Merged-chr1-82724399-3	chr1	82724296	82724496	+	860.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310699)	promoter-TSS (NM_001310699)	-494.0	NM_001310697	75734.0	Mm.396863	NM_029409	ENSMUSG00000026150	Mff	5230400G24Rik|AI314724	mitochondrial fission factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-122636897-2	chr6	122636797	122636997	+	708.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	10473.0	NM_139218	73708.0	Mm.27982	NM_139218	ENSMUSG00000046323	Dppa3	2410075G02Rik|PCG7|PGC7|Stella	developmental pluripotency-associated 3	protein-coding	0.575070482675756	0.23520136055169	0.663338840845028	0.225102972196542	0.477597378761846	0.423728080766992	0.7828928165899	0.225869568683661	0.357473472277678	0.84748235600155	1
Merged-chr5-100547071-2	chr5	100546971	100547171	+	553.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359204, intron 10 of 10)	B1_Mur1|SINE|Alu	25134.0	NM_139198	231507.0	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-25854651-4	chr13	25854560	25854760	+	930.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER31A|LTR|ERV1	111656.0	NR_045062	100503530.0	Mm.86763	NR_045062	ENSMUSG00000086531	Gm11351	-	predicted gene 11351	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-52959870-2	chr2	52959770	52959970	+	643.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	102002.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-128732845-2	chr4	128732745	128732945	+	684.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001195083, intron 1 of 6)	B2_Mm2|SINE|B2	5274.0	NM_001195083	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-36685471-4	chr8	36685299	36685499	+	937.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001194940, intron 5 of 17)	intron (NM_001194940, intron 5 of 17)	47655.0	NM_001194941	50768.0	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	2.06214030221211	2.41811880052633	2.14107830318254	1.97189849124706	1.77344905807361	1.83844517048252	1.42101715773631	1.1642279272319	-1.70398323552473	0.097472596658113	0.485259840126158
Merged-chr18-62192230-4	chr18	62192138	62192338	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12138.0	NM_001013754	225609.0	Mm.296917	NM_001013754	ENSMUSG00000054589	Gm9949	EG225609	predicted gene 9949	protein-coding	2.99267558998798	3.91699452461442	1.49062288368662	2.69924314371235	2.19646298194377	3.12120250859978	2.39856706341943	3.09428679890431	-0.491101493281958	0.547788831549543	0.957907150886162
Merged-chr2-172398184-4	chr2	172398080	172398280	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080820, intron 1 of 6)	intron (NM_001080820, intron 1 of 6)	4386.0	NM_001276423	320664.0	Mm.210195	NM_001033538	ENSMUSG00000074570	Cass4	F730031O20Rik	Cas scaffolding protein family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95521399-4	chr3	95521284	95521484	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5402.0	NM_021281	13040.0	Mm.3619	NM_021281	ENSMUSG00000038642	Ctss	Cats	cathepsin S	protein-coding	-2.18308165884198	-2.15547475440471	-2.16382331017202	-2.1706810624505	-2.18114370519566	-2.15366558754311	-2.03057248461154	-2.16945352807143	0.759018020146679	0.829933115115583	1
Merged-chr7-82816389-1	chr7	82816289	82816489	+	566.0	f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-50944.0	NM_175366	108797.0	Mm.306789	NM_175366	ENSMUSG00000057706	Mex3b	4931439A04Rik|M-04814|Rkhd3|mKIAA2009	mex3 RNA binding family member B	protein-coding	2.68995590498003	1.48049175066173	2.83084342430062	3.23932795502169	2.63116467210719	2.19267037983935	1.93488973756415	2.67366460675048	-0.634671467692123	0.458849590714981	0.919607527898796
Merged-chr18-60729312-4	chr18	60729206	60729406	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001348146, intron 1 of 6)	intron (NM_001348146, intron 1 of 6)	-1740.0	NM_001348103	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-117404722-4	chr2	117404631	117404831	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61854.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-79523578-2	chr3	79523478	79523678	+	579.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162999, intron 1 of 16)	intron (NM_001162999, intron 1 of 16)	44101.0	NM_001162999	329679.0	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-133178804-2	chr1	133178704	133178904	+	700.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47638.0	NM_133819	108954.0	Mm.293628	NM_133819	ENSMUSG00000046062	Ppp1r15b	1810033K10Rik|AI606441|C530022L24Rik|CReP	protein phosphatase 1, regulatory (inhibitor) subunit 15b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-59736210-4	chr10	59736121	59736321	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359267, intron 3 of 11)	intron (NM_001359267, intron 3 of 11)	33658.0	NM_001291443	216001.0	Mm.27199	NM_144822	ENSMUSG00000020111	Micu1	C730016L05Rik|Calc|Cbara1	mitochondrial calcium uptake 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41911799-4	chr19	41911701	41911901	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023418)	promoter-TSS (NM_023418)	-70.0	NM_023418	18648.0	Mm.16783	NM_023418	ENSMUSG00000011752	Pgam1	2310050F24Rik|Pgam-1	phosphoglycerate mutase 1	protein-coding	6.20595947723346	6.52794666729289	6.12492080462601	6.52684344761736	6.38958365767365	6.31140790078645	6.78288823524263	6.83694465771547	0.262881214523363	0.217874195783061	0.708842567601735
Merged-chr2-121957139-2	chr2	121957039	121957239	+	742.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_212450, intron 1 of 12)	intron (NM_212450, intron 1 of 12)	-1047.0	NM_008545	17147.0	Mm.389349	NM_008545	ENSMUSG00000074881	Mageb3	Mage-b3|Mage-ps1|Mage-rs3|Smage3	melanoma antigen, family B, 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-86151100-4	chr17	86151001	86151201	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5926.0	NM_030133	78586.0	Mm.146236	NM_030133	ENSMUSG00000024135	Srbd1	AI461933|C85414|D530025C17Rik	S1 RNA binding domain 1	protein-coding	5.18549976707509	4.85299480673545	4.87805655684038	4.26189660077043	4.38807850825989	5.76232013005298	4.91263250727248	5.1950747000047	0.367291006398747	0.330459166301802	0.83197671091297
Merged-chr15-51727962-2	chr15	51727862	51728062	+	994.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	137499.0	NM_080635	68135.0	Mm.289800	NM_080635	ENSMUSG00000022312	Eif3h	1110008A16Rik|40kD|9430017H16Rik|EIF3-P40|EIF3-gamma|Eif3s3	eukaryotic translation initiation factor 3, subunit H	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-145834245-2	chr2	145834145	145834345	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028724, intron 4 of 12)	intron (NM_028724, intron 4 of 12)	48129.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-3649022-4	chr8	3648928	3649128	+	986.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6742.0	NM_001204959	57264.0	Mm.1181	NM_022984	ENSMUSG00000012705	Retn	ADSF|Fizz3|Rstn|Xcp4	resistin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16300734-1	chr7	16300634	16300834	+	735.0	f1_balb.idr	Intergenic	PB1D7|SINE|Alu	-8849.0	NM_133234	170770.0	Mm.7660	NM_133234	ENSMUSG00000002083	Bbc3	PUMA|PUMA/JFY1	BCL2 binding component 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-124145819-2	chr9	124145719	124145919	+	714.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	24276.0	NM_009917	12774.0	Mm.14302	NM_009917	ENSMUSG00000079227	Ccr5	AM4-7|CD195|Cmkbr5	chemokine (C-C motif) receptor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99530073-4	chr7	99529971	99530171	+	802.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-5415.0	NM_178220	109689.0	Mm.260193	NM_177231	ENSMUSG00000018909	Arrb1	1200006I17Rik|AW208571|G430100A01Rik	arrestin, beta 1	protein-coding	1.62087271897643	0.688784237438948	1.3284462534866	0.666891013345294	1.56749943533993	0.691532246584891	0.679217702762762	1.29072321224314	-0.115169962439591	0.942984525460472	0.998431161219273
Merged-chr11-116087045-4	chr11	116086950	116087150	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347642)	promoter-TSS (NM_001347642)	-55.0	NM_001347642	22378.0	Mm.284792	NM_016852	ENSMUSG00000034341	Wbp2	-	WW domain binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-163647594-1	chr2	163647494	163647694	+	542.0	f1_c57bl6.idr	Intergenic	Lx3_Mus|LINE|L1	-2451.0	NM_012032	26943.0	Mm.218473	NM_012032	ENSMUSG00000017707	Serinc3	AA959945|AA960047|AIGP1|DIFF33|TMS-1|Tde1	serine incorporator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94573662-2	chr10	94573562	94573762	+	678.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359760, intron 1 of 3)	(TG)n|Simple_repeat|Simple_repeat	-1595.0	NM_001168684	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139373018-4	chr5	139372922	139373122	+	875.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028469, intron 2 of 4)	intron (NM_028469, intron 2 of 4)	-3277.0	NR_029768	723898.0		NR_029768	ENSMUSG00000065593	Mir339	Mirn339|mir-339|mmu-mir-339	microRNA 339	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35200630-4	chr17	35200521	35200721	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001278601, intron 2 of 2)	intron (NM_001278601, intron 2 of 2)	1386.0	NM_013693	21926.0	Mm.1293	NM_013693	ENSMUSG00000024401	Tnf	DIF|TNF-a|TNF-alpha|TNFSF2|TNFalpha|Tnfa|Tnfsf1a|Tnlg1f	tumor necrosis factor	protein-coding	4.95670991244086	5.04677284580871	5.53628820647903	4.76821728145297	4.8680823811402	4.85368766498827	5.08430815600342	5.08445651127896	-0.151548294164725	0.637247437193543	0.982417279970648
Merged-chr7-127185773-2	chr7	127185673	127185873	+	935.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10304.0	NM_001285907	70233.0	Mm.28050	NM_027353	ENSMUSG00000042502	Cd2bp2	1500011B02Rik|2410024K20Rik|AW048183	CD2 antigen (cytoplasmic tail) binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91852964-4	chr16	91852866	91853066	+	957.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110275, intron 21 of 28)	L2b|LINE|L2	78664.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-145744702-3	chr2	145744593	145744793	+	593.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033220, intron 3 of 3)	intron (NR_033220, intron 3 of 3)	-41423.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47523571-4	chr17	47523461	47523661	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081635, intron 1 of 6)	intron (NM_001081635, intron 1 of 6)	18510.0	NM_001081635	12445.0	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118467941-2	chr11	118467841	118468041	+	586.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8891.0	NM_172573	217364.0	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-84249442-2	chr12	84249342	84249542	+	733.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30561.0	NM_001163501	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-71018157-2	chr12	71018057	71018257	+	948.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081195, intron 2 of 23)	AT_rich|Low_complexity|Low_complexity	2190.0	NM_001081195	238247.0	Mm.241601	NM_001081195	ENSMUSG00000048118	Arid4a	A630009N03|A630067N03Rik|Rbbp1	AT rich interactive domain 4A (RBP1-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-133545187-4	chr3	133545087	133545287	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346736)	promoter-TSS (NM_001346736)	-797.0	NM_001346736	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-120922157-2	chr7	120922057	120922257	+	741.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164096, intron 1 of 19)	intron (NM_001164096, intron 1 of 19)	4413.0	NM_001164096	26939.0	Mm.193632	NM_025298	ENSMUSG00000030880	Polr3e	RPC5|Sin	polymerase (RNA) III (DNA directed) polypeptide E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-124423186-4	chr9	124423085	124423285	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027950)	promoter-TSS (NR_027950)	-66.0	NR_027950	75135.0	Mm.476814	NR_015516		4930526I15Rik	1600027J15Rik	RIKEN cDNA 4930526I15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191268819-2	chr1	191268686	191268886	+	777.416626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44332.0	NR_151547	100504360.0	Mm.16927	NM_001033188		D730003I15Rik	AU020850	RIKEN cDNA D730003I15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-19107680-2	chr10	19107580	19107780	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34069.0	NR_038021	100504265.0	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-132237770-3	chr7	132237666	132237866	+	921.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001360768, exon 8 of 8)	3' UTR (NM_001360768, exon 8 of 8)	-77898.0	NR_028578	100043682.0	Mm.482794	NR_028578	ENSMUSG00000109270	Gm10584	-	predicted gene 10584	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-73304089-2	chr12	73303989	73304189	+	599.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037717, intron 3 of 15)	intron (NM_001037717, intron 3 of 15)	17241.0	NM_001037717	625098.0	Mm.32075	NM_001037717	ENSMUSG00000044712	Slc38a6	AW322671|EG625098	solute carrier family 38, member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-60351977-3	chr10	60351892	60352092	+	693.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028732, intron 1 of 6)	intron (NM_028732, intron 1 of 6)	5141.0	NM_028732	74048.0	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-50361921-4	chr17	50361814	50362014	+	972.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68294.0	NM_001277863	13164.0	Mm.280641	NM_010021	ENSMUSG00000010592	Dazl	Daz-like|Dazh|Dazl1|Dazla|Tpx-2|Tpx2	deleted in azoospermia-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-57549820-4	chr16	57549720	57549920	+	978.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177871, intron 1 of 1)	intron (NM_001177871, intron 1 of 1)	578.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-103907983-2	chr14	103907883	103908083	+	662.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63507.0	NM_001136061	13618.0	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-13987243-2	chr8	13987143	13987343	+	558.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_131137, intron 1 of 2)	ID4|SINE|ID	1153.0	NR_131137	546036.0	Mm.31785	NR_131136	ENSMUSG00000110058	Gm5907	EG546036|Gm45519|Gm845	predicted gene 5907	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-145736780-2	chr2	145736680	145736880	+	624.333374	f1_balb.idr|f1_c57bl6.idr	intron (NR_033220, intron 2 of 3)	MER54A|LTR|ERVL	35585.0	NR_033220	408057.0	Mm.486711	NR_033220	ENSMUSG00000087594	BC039771	-	cDNA sequence BC039771	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-77450870-2	chr8	77450770	77450970	+	556.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_030113, exon 2 of 23)	exon (NM_030113, exon 2 of 23)	-66186.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-82714418-4	chr6	82714313	82714513	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60041.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-9860078-2	chr1	9859978	9860178	+	572.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037759, intron 1 of 16)	ERVL-B4-int|LTR|ERVL	11797.0	NM_001037759	170755.0	Mm.336410	NM_133220	ENSMUSG00000025915	Sgk3	2510015P22Rik|A330005P07Rik|Cisk|fy|fz	serum/glucocorticoid regulated kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99469248-4	chr15	99469150	99469350	+	859.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_029236)	TTS (NM_029236)	5480.0	NM_029236	75284.0	Mm.32826	NM_029236	ENSMUSG00000037525	Bcdin3d	4930556P03Rik|AV138748	BCDIN3 domain containing	protein-coding	1.10241553076398	1.37587370703392	0.91068212903142	0.71544543819946	1.31006687776713	0.942900287363264	0.916521282533658	1.38801480927317	0.493303830851261	0.720861472626969	0.998431161219273
Merged-chr10-95940643-4	chr10	95940518	95940718	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001001932)	promoter-TSS (NM_001001932)	-45.0	NM_001001932	216238.0	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-57856239-3	chr14	57856107	57856307	+	641.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360097, intron 7 of 13)	B2_Mm2|SINE|B2	29968.0	NM_026401	67840.0	Mm.319530	NM_026401	ENSMUSG00000021967	Mrpl57	2610025P17Rik|AV005697|Mrp63	mitochondrial ribosomal protein L57	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165907296-3	chr2	165907220	165907420	+	661.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-22482.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	0.0633905013766879	0.0813402836952322	0.0754688367036004	0.500377462997622	0.451403853635083	0.819437603948745	0.076764531958301	0.24027697179994	1.71513812314368	0.406510097347998	1
Merged-chr15-78405864-3	chr15	78405736	78405936	+	821.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162493)	promoter-TSS (NM_001162493)	23.0	NM_009437	22117.0	Mm.15312	NM_009437	ENSMUSG00000044986	Tst	Rhodanese	thiosulfate sulfurtransferase, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-7868992-4	chr9	7868872	7869072	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007464, intron 1 of 8)	intron (NM_007464, intron 1 of 8)	4198.0	NM_007464	11796.0	Mm.2026	NM_007464	ENSMUSG00000032000	Birc3	AW107670|Api1|Api2|Birc2|C-IAP2|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF49|cIAP-1|cIAP-2|cIAP1|cIAP2	baculoviral IAP repeat-containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-96615537-2	chr10	96615437	96615637	+	677.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1464.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-72559774-4	chr5	72559680	72559880	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133921)	promoter-TSS (NM_133921)	-135.0	NM_133921	100978.0	Mm.187453	NM_133921	ENSMUSG00000072889	Nfxl1	1700012H24Rik|AW538212|D430033A06Rik|DNABF|GCF|Gm1058|TCF9	nuclear transcription factor, X-box binding-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-9915241-2	chr19	9915141	9915341	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-15708.0	NM_016692	16319.0	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-73472489-3	chr14	73472385	73472585	+	688.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37564.0	NM_026119	67381.0	Mm.282888	NM_026119	ENSMUSG00000022109	Med4	2410046H15Rik|DRIP36|HSPC126|TRAP36|Vdirp|Vdrip	mediator complex subunit 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-65860836-4	chr5	65860722	65860922	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2747.0	NM_001081105	74734.0	Mm.20323	NM_001081105	ENSMUSG00000029204	Rhoh	5830400A04Rik|AU019774|Arhh	ras homolog family member H	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-180173405-1	chr2	180173305	180173505	+	630.0	f1_c57bl6.idr	intron (NM_019822, intron 3 of 9)	intron (NM_019822, intron 3 of 9)	1817.0	NM_019822	56436.0	Mm.316654	NM_019822	ENSMUSG00000039041	Adrm1	1110063P18Rik|2510006J17Rik|AA408205|ARM-1|AU043535|Arm1|Gp110|Rpn13	adhesion regulating molecule 1	protein-coding	-1.09263096407811	-1.20688314914341	-0.907411003289268	-1.22542747344038	-1.08900461497186	-1.20467684259695	-1.2147595416125	-1.22393047656628	-1.24159463325987	0.69043003731016	1
Merged-chr11-120190024-4	chr11	120189888	120190088	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_030682)	promoter-TSS (NR_030682)	-132.0	NR_030682	100042332.0	Mm.269766	NR_030682		2810410L24Rik	-	RIKEN cDNA 2810410L24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-64753704-4	chr17	64753622	64753822	+	973.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008549, exon 22 of 22)	3' UTR (NM_008549, exon 22 of 22)	-13389.0	NR_105051	101202683.0	Mm.393309	NR_105051		Dreh	-	down-regulated in hepatocellular carcinoma	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127284321-2	chr10	127284221	127284421	+	759.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_033072, intron 8 of 12)	intron (NM_033072, intron 8 of 12)	4697.0	NM_001347171	110962.0	Mm.372826	NM_033072	ENSMUSG00000025409	Mbd6	D10Wsu93e	methyl-CpG binding domain protein 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-19005434-1	chr10	19005334	19005534	+	544.0	f0_balb.idr	intron (NM_001166402, intron 5 of 7)	intron (NM_001166402, intron 5 of 7)	6529.0	NM_001166402	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-97361694-4	chr7	97361654	97361854	+	979.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-9863.0	NM_199035	381903.0	Mm.279683	NM_199035	ENSMUSG00000035704	Alg8	AI447372|Gm1089	asparagine-linked glycosylation 8 (alpha-1,3-glucosyltransferase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-57096281-4	chr17	57096170	57096370	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033508, intron 3 of 3)	intron (NR_033508, intron 3 of 3)	-8488.0	NM_009451	22153.0	Mm.7420	NM_009451	ENSMUSG00000062591	Tubb4a	AI325297|M(beta)4|Tubb|Tubb4	tubulin, beta 4A class IVA	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95283461-3	chr3	95283362	95283562	+	899.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_199475, exon 1 of 10)	5' UTR (NM_199475, exon 1 of 10)	527.0	NM_199475	75007.0	Mm.279287	NM_133858	ENSMUSG00000038712	Mindy1	1810005H09Rik|4930504E06Rik|AA562754|AA960384|AW561904|Fam63a|cI-40|mKIAA1390|ni	MINDY lysine 48 deubiquitinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-132339593-4	chr7	132339499	132339699	+	988.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22371.0	NM_029935	77590.0	Mm.213582	NM_029935	ENSMUSG00000030930	Chst15	4631426J05Rik|BRAG|GalNAc4S-6ST|GalNAcS-6ST|MAd5|mKIAA0598	carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-102624323-4	chr4	102624251	102624451	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34508.0	NM_001177981	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	5.85510423057104	5.39083333641423	5.42025663856275	5.19915622243815	5.37560677488379	5.85596510781803	4.69047422924195	4.7415294513126	-0.282485143772115	0.394149616574286	0.882643365025628
Merged-chr11-106621241-2	chr11	106621141	106621341	+	657.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8311.0	NM_198292	21763.0	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-83600074-4	chr7	83599921	83600121	+	842.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177695, exon 8 of 23)	exon (NM_177695, exon 8 of 23)	15090.0	NM_177695	233424.0	Mm.486619	NM_177695	ENSMUSG00000038540	Tmc3	9030203A06	transmembrane channel-like gene family 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-100088824-2	chr12	100088724	100088924	+	608.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23507.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55541001-3	chr14	55540900	55541100	+	705.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028994, intron 1 of 9)	intron (NM_028994, intron 1 of 9)	734.0	NM_028994	74551.0	Mm.29856	NM_028994	ENSMUSG00000040618	Pck2	1810010O14Rik|9130022B02Rik|PEPCK-M	phosphoenolpyruvate carboxykinase 2 (mitochondrial)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-60937824-2	chr11	60937724	60937924	+	991.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008928, intron 1 of 11)	intron (NM_008928, intron 1 of 11)	5767.0	NM_008928	26397.0	Mm.18494	NM_008928	ENSMUSG00000018932	Map2k3	AW212142|MEK3|MKK3|Prkmk3|mMKK3b	mitogen-activated protein kinase kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-114781688-2	chr6	114781588	114781788	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253718, intron 19 of 19)	intron (NM_001253718, intron 19 of 19)	138591.0	NM_001253718	74244.0	Mm.275332	NM_028835	ENSMUSG00000030314	Atg7	1810013K23Rik|Agp7|Apg7l|Atg7l|Gm21553	autophagy related 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-75432934-4	chr9	75432842	75433042	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8582.0	NM_001039522	235497.0	Mm.41508	NM_001006122	ENSMUSG00000042487	Leo1	Gm185	Leo1, Paf1/RNA polymerase II complex component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69098135-1	chr11	69098035	69098235	+	647.0	f0_c57.idr	promoter-TSS (NM_011065)	promoter-TSS (NM_011065)	-814.0	NM_011065	18626.0	Mm.7373	NM_011065	ENSMUSG00000020893	Per1	Hftm|Per|m-rigui|mPer1	period circadian clock 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34051401-1	chr17	34051301	34051501	+	944.0	f1_c57bl6.idr	intron (NM_009926, intron 12 of 63)	intron (NM_009926, intron 12 of 63)	12263.0	NM_001317722	12815.0	Mm.20230	NM_009926	ENSMUSG00000024330	Col11a2	-	collagen, type XI, alpha 2	protein-coding	2.09129483538339	1.05693127909499	2.80369361624569	2.01800505639831	0.974668904939338	1.06297176280578	1.98151532014863	1.78294290617825	-1.59207559669622	0.185019576468017	0.660674070971212
Merged-chr5-21220733-3	chr5	21220632	21220832	+	884.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153365, intron 6 of 26)	intron (NR_153365, intron 6 of 26)	34465.0	NM_001359877	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-148851400-4	chr2	148851305	148851505	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029960)	promoter-TSS (NM_029960)	-471.0	NM_029960	77705.0	Mm.159975	NM_029960	ENSMUSG00000027446	9230104L09Rik	mCST E2	RIKEN cDNA 9230104L09 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-142074945-3	chr5	142074835	142075035	+	763.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177879, intron 22 of 44)	intron (NM_177879, intron 22 of 44)	-326562.0	NM_199068	17425.0	Mm.24214	NM_010812	ENSMUSG00000056493	Foxk1	A630048H08Rik|AI463295|Gm10868|Mnf	forkhead box K1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-120967631-1	chr2	120967531	120967731	+	698.0	f0_balb.idr	intron (NM_009461, intron 1 of 46)	L2|LINE|L2	3084.0	NM_009461	22222.0	Mm.389330	NM_009461	ENSMUSG00000027272	Ubr1	AI504731	ubiquitin protein ligase E3 component n-recognin 1	protein-coding	-0.502555490052446	-0.142681210592088	-0.49502312983473	-0.497859379344315	-0.501857891543156	-0.296621059147968	0.07452708804918	-0.497364292822422	1.36392846085014	0.605018685066218	1
Merged-chr16-11282959-4	chr16	11282855	11283055	+	999.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28510.0	NR_035466	100316833.0		NR_035466	ENSMUSG00000088544	Mir1945	mir-1945|mmu-mir-1945	microRNA 1945	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91237100-4	chr2	91237001	91237201	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015464)	promoter-TSS (NR_015464)	-35.0	NM_028119	107986.0	Mm.389334	NM_028119	ENSMUSG00000002109	Ddb2	2610043A19Rik	damage specific DNA binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-58416039-3	chr3	58415920	58416120	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081229, exon 1 of 4)	exon (NM_001081229, exon 1 of 4)	1300.0	NM_001347233	72033.0	Mm.218409	NM_001081229	ENSMUSG00000027806	Tsc22d2	1810043J12Rik|5530402M19Rik	TSC22 domain family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16101313-2	chr7	16101213	16101413	+	599.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025898, intron 1 of 10)	intron (NM_025898, intron 1 of 10)	2733.0	NM_025898	108124.0	Mm.104540	NM_025898	ENSMUSG00000006024	Napa	1500039N14Rik|AW209189|RA81|SNAP-alpha|SNAPA|SNARE|a-SNAP|hyh	N-ethylmaleimide sensitive fusion protein attachment protein alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-4874755-2	chr1	4874655	4874855	+	594.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159750, intron 2 of 9)	Lx7|LINE|L1	16427.0	NM_001159751	21399.0	Mm.207263	NM_011541	ENSMUSG00000033813	Tcea1	S-II	transcription elongation factor A (SII) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-112000840-1	chr13	112000740	112000940	+	643.0	f1_c57bl6.idr	Intergenic	(TGG)n|Simple_repeat|Simple_repeat	132904.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	0.147696743787257	0.525221627878396	-0.35190065311485	-0.355846958349645	-0.361450969175533	-0.345664610912991	-0.350775399753323	-0.355156408043468	-3.78705622005413	0.134401487139836	1
Merged-chr15-36791827-4	chr15	36791718	36791918	+	958.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253807)	promoter-TSS (NM_001253807)	-886.0	NM_001253807	22631.0	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-63566368-4	chr13	63566295	63566495	+	980.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008957)	promoter-TSS (NM_008957)	-660.0	NM_008957	19206.0	Mm.228798	NM_008957	ENSMUSG00000021466	Ptch1	A230106A15Rik|Ptc|Ptc1|Ptch|mes|wig	patched 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75494134-2	chr11	75494034	75494234	+	691.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_138659, intron 15 of 41)	intron (NM_138659, intron 15 of 41)	7357.0	NM_138659	192159.0	Mm.3757	NM_138659	ENSMUSG00000020850	Prpf8	AU019467|D11Bwg0410e|DBF3/PRP8|Prp8|Sfprp8l	pre-mRNA processing factor 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-62627721-4	chr17	62627604	62627804	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010109, intron 2 of 3)	intron (NM_010109, intron 2 of 3)	253613.0	NM_207654	13640.0	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-82147774-4	chr15	82147659	82147859	+	919.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033218, intron 1 of 18)	CpG	490.0	NM_033218	20788.0	Mm.38016	NM_033218	ENSMUSG00000022463	Srebf2	AI608257|SREBP-2|SREBP2|SREBP2gc|bHLHd2|lop13|nuc	sterol regulatory element binding factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-106162762-4	chr1	106162637	106162837	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040630, intron 2 of 2)	B3A|SINE|B2	8787.0	NR_040630	626049.0	Mm.247410	NR_040630	ENSMUSG00000101583	Gm20753	-	predicted gene, 20753	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-34231480-2	chr4	34231380	34231580	+	987.1666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-181413.0	NM_026293	67652.0	Mm.55848	NM_026293	ENSMUSG00000028264	Spaca1	1700124L11Rik|4930540L03Rik	sperm acrosome associated 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28170522-2	chr7	28170422	28170622	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007991, intron 1 of 8)	intron (NM_007991, intron 1 of 8)	774.0	NM_007991	14113.0	Mm.4595	NM_007991	ENSMUSG00000046865	Fbl	AL022665|FIB|FLRN|RNU3IP1	fibrillarin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-83142986-2	chr15	83142886	83143086	+	639.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347082, intron 1 of 7)	intron (NM_001347082, intron 1 of 7)	6392.0	NM_178627	73826.0	Mm.23758	NM_178627	ENSMUSG00000041815	Poldip3	1110008P04Rik|AA408269|AL022852|C77954|PDIP46|SKAR|mKIAA1649	polymerase (DNA-directed), delta interacting protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-56802972-1	chr4	56802872	56803072	+	579.0	f0_balb.idr	promoter-TSS (NM_026079)	promoter-TSS (NM_026079)	-641.0	NM_026079	230233.0	Mm.282743	NM_026079	ENSMUSG00000028431	Ikbkap	3110040G09Rik|6030413P05|C78473|Elp1|IKAP	inhibitor of kappa light polypeptide enhancer in B cells, kinase complex-associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124745637-4	chr6	124745542	124745742	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007881, exon 6 of 10)	exon (NM_007881, exon 6 of 10)	-4563.0	NM_013535	14790.0	Mm.439877	NM_013535	ENSMUSG00000072772	Grcc10	2310033H05Rik|C10	gene rich cluster, C10 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78927449-3	chr15	78927415	78927615	+	917.3412480000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008495, intron 1 of 3)	intron (NM_008495, intron 1 of 3)	790.0	NM_008495	16852.0	Mm.43831	NM_008495	ENSMUSG00000068220	Lgals1	AA410090|Gal-1|Galbp|L-14.5|L14|Lect14|galectin-1	lectin, galactose binding, soluble 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-46244452-2	chr11	46244352	46244552	+	686.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252459, intron 21 of 30)	intron (NM_001252459, intron 21 of 30)	8895.0	NM_177075	320116.0	Mm.39600	NM_177075	ENSMUSG00000048721	Fndc9	C030019I05Rik	fibronectin type III domain containing 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-36217737-3	chr2	36217613	36217813	+	828.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12713.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102382423-4	chr12	102382325	102382525	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177620, intron 7 of 9)	intron (NM_177620, intron 7 of 9)	57388.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131501775-3	chr1	131501668	131501868	+	954.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081011, intron 2 of 22)	intron (NM_001081011, intron 2 of 22)	25593.0	NM_001081011	14270.0	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-163779584-4	chr1	163779490	163779690	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010629)	promoter-TSS (NM_010629)	7.0	NM_010629	16579.0	Mm.4651	NM_010629	ENSMUSG00000026585	Kifap3	KAP-3|KAP3|SMAP	kinesin-associated protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-21128785-3	chr19	21128721	21128921	+	753.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	24111.0	NR_126458	75354.0	Mm.243873	NR_126458		4930554I06Rik	-	RIKEN cDNA 4930554I06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70607256-2	chr11	70607156	70607356	+	840.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016713, intron 14 of 30)	intron (NM_016713, intron 14 of 30)	-8638.0	NM_001145537	668433.0	Mm.425687	NM_001145537	ENSMUSG00000087279	4930544D05Rik	-	RIKEN cDNA 4930544D05 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-103336888-4	chr12	103336813	103337013	+	960.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023049, intron 3 of 9)	intron (NM_023049, intron 3 of 9)	19088.0	NM_023049	65256.0	Mm.27159	NM_023049	ENSMUSG00000021200	Asb2	1110008E15Rik	ankyrin repeat and SOCS box-containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-40193130-2	chr9	40193030	40193230	+	972.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153114, intron 1 of 6)	intron (NR_153114, intron 1 of 6)	814.0	NM_030713	80902.0	Mm.132196	NM_030713	ENSMUSG00000025602	Zfp202	C130037E22Rik|Znf202	zinc finger protein 202	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-123065461-4	chr8	123065360	123065560	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153176)	promoter-TSS (NM_153176)	-48.0	NM_153176	234847.0	Mm.292075	NM_153176	ENSMUSG00000000738	Spg7	AI452278|AU015315|Cmar|PGN	SPG7, paraplegin matrix AAA peptidase subunit	protein-coding	4.85358537366336	3.62261889009736	5.9284953074501	4.71374694992572	5.25389959567609	4.73817486881074	4.73898689800934	5.83961220876365	0.242686992570392	0.583305027231843	0.966599221005409
Merged-chr7-80395633-1	chr7	80395533	80395733	+	829.0	f1_c57bl6.idr	intron (NM_011046, intron 7 of 15)	intron (NM_011046, intron 7 of 15)	7179.0	NM_011046	18550.0	Mm.5241	NM_011046	ENSMUSG00000030530	Furin	9130404I01Rik|Fur|PACE|Pcsk3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding	-0.0480014665724991	0.602554763302802	0.655195670413959	-0.0405553297132259	-0.0468917679364197	-0.0290060745335728	-0.0348088795662428	0.280103469245005	-2.27973941446733	0.318244617379967	1
Merged-chr17-29550333-2	chr17	29550233	29550433	+	883.3333130000001	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162901)	promoter-TSS (NM_001162901)	531.0	NM_198647	381085.0	Mm.328934	NM_198647	ENSMUSG00000042203	Tbc1d22b	BC045600	TBC1 domain family, member 22B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-67450301-4	chr17	67450209	67450409	+	987.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-95818.0	NM_001357625	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-84181952-2	chr12	84181852	84182052	+	742.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163501, intron 1 of 12)	intron (NM_001163501, intron 1 of 12)	12063.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-132305166-2	chr7	132305066	132305266	+	668.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029935, intron 1 of 7)	intron (NM_029935, intron 1 of 7)	-10498.0	NR_028578	100043682.0	Mm.482794	NR_028578	ENSMUSG00000109270	Gm10584	-	predicted gene 10584	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152807801-4	chr1	152807673	152807873	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010877, exon 2 of 16)	5' UTR (NM_010877, exon 2 of 16)	7620.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-47238175-1	chr13	47238075	47238275	+	561.0	f1_c57bl6.idr	intron (NM_146042, intron 5 of 7)	intron (NM_146042, intron 5 of 7)	44172.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-67631040-3	chr7	67630942	67631142	+	989.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028143, intron 2 of 9)	intron (NR_028143, intron 2 of 9)	14194.0	NM_175124	67867.0	Mm.31247	NM_027413	ENSMUSG00000030556	Lrrc28	1300004K21Rik|2210012C09Rik|2310058O11Rik	leucine rich repeat containing 28	protein-coding	1.44876093284976	2.46235148226185	2.47214594352016	1.98454040069386	2.21340155238673	1.97340876388415	1.91152241801846	1.9943288628247	-0.335208033528298	0.718971570344686	0.998431161219273
Merged-chr5-124351335-3	chr5	124351239	124351439	+	876.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013812, intron 1 of 3)	intron (NM_013812, intron 1 of 3)	3289.0	NM_013812	13445.0	Mm.391838	NM_013812	ENSMUSG00000029394	Cdk2ap1	Apc10|Cdkap1|DORC1|Doc1|ST19|doc-1|p12	CDK2 (cyclin-dependent kinase 2)-associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111737224-2	chr12	111737124	111737324	+	911.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163388, intron 4 of 5)	B2_Mm1t|SINE|B2	-21625.0	NM_001361612	16593.0	Mm.278357	NM_008450	ENSMUSG00000021288	Klc1	AI874768|Kns2	kinesin light chain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-104332922-2	chr8	104332822	104333022	+	910.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7672.0	NM_024217	68119.0	Mm.390108	NM_024217	ENSMUSG00000031875	Cmtm3	9430096L06Rik|AI413895|BNAS2|Cklfsf3	CKLF-like MARVEL transmembrane domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-96399623-4	chr9	96399507	96399707	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35176.0	NM_001357212	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-30646835-4	chr15	30646713	30646913	+	865.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008729, exon 7 of 23)	exon (NM_008729, exon 7 of 23)	-392313.0	NR_045186	73784.0	Mm.66947	NR_045186	ENSMUSG00000115474	4930430F21Rik	-	RIKEN cDNA 4930430F21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56023975-2	chr17	56023875	56024075	+	958.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013664, intron 1 of 9)	intron (NM_013664, intron 1 of 9)	12662.0	NM_013664	20405.0	Mm.1773	NM_013664	ENSMUSG00000003200	Sh3gl1	C77078|EEN|SH3P8|Sh3d2b	SH3-domain GRB2-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-167349992-4	chr1	167349910	167350110	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019993)	promoter-TSS (NM_019993)	19.0	NM_019993	56752.0	Mm.292539	NM_019993	ENSMUSG00000026687	Aldh9a1	AA139417|Abaldh|ESTM40|TMABA-DH|Tmabadh	aldehyde dehydrogenase 9, subfamily A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98709282-4	chr11	98709179	98709379	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361995, intron 19 of 25)	intron (NM_001361995, intron 19 of 25)	7966.0	NM_009971	12985.0	Mm.1238	NM_009971	ENSMUSG00000038067	Csf3	Csfg|G-CSF|MGI-IG	colony stimulating factor 3 (granulocyte)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-149562669-2	chr4	149562569	149562769	+	944.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_023465, intron 4 of 4)	intron (NM_023465, intron 4 of 4)	17552.0	NM_001141930	67087.0	Mm.299735	NM_023465	ENSMUSG00000028988	Ctnnbip1	1110008O09Rik|2310001I19Rik|AW457332|Catnbip1|Icat	catenin beta interacting protein 1	protein-coding	1.53934631143275	0.816253620576149	0.795097012034751	0.778219336535619	1.66092972779749	0.820918372441121	1.93880112878146	2.39228939412138	2.61043287510663	0.0661942941179713	0.385908231694568
Merged-chr1-191201414-4	chr1	191201316	191201516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18083.0	NM_007498	11910.0	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-24758564-4	chr13	24758508	24758708	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020567, intron 2 of 6)	MTD|LTR|ERVL-MaLR	3329.0	NM_020567	57441.0	Mm.12239	NM_020567	ENSMUSG00000006715	Gmnn	AW546347|Gem	geminin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-49432083-2	chr17	49431983	49432183	+	582.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_020042, intron 1 of 10)	intron (NM_020042, intron 1 of 10)	3719.0	NM_020042	56738.0	Mm.22256	NM_020042	ENSMUSG00000064120	Mocs1	3110045D15Rik|AI043170|AW536397	molybdenum cofactor synthesis 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-12763587-2	chr17	12763487	12763687	+	613.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010515, intron 1 of 47)	MER20|DNA|hAT-Charlie	6119.0	NM_010515	16004.0	Mm.26553	NM_010515	ENSMUSG00000023830	Igf2r	AI661837|CD222|CI-MPR|M6P/IGF2R|Mpr300	insulin-like growth factor 2 receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-32533199-4	chr11	32533090	32533290	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359177)	promoter-TSS (NM_001359177)	-76.0	NM_001359178	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-22700116-4	chr10	22700013	22700213	+	972.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178934, intron 4 of 4)	intron (NM_178934, intron 4 of 4)	29319.0	NR_106123	102465768.0		NR_106123	ENSMUSG00000098714	Mir7663	Gm28034|mmu-mir-7663	microRNA 7663	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-64909100-1	chr1	64909000	64909200	+	590.5	f0_balb.idr	intron (NM_001039493, intron 3 of 7)	MER21B|LTR|ERVL	47724.0	NM_001039493	241075.0	Mm.239534	NM_175509	ENSMUSG00000051344	Plekhm3	9430067K14Rik|A230102O09Rik|AI449570|DAPR|Plekhm1l	pleckstrin homology domain containing, family M, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-45675306-3	chr19	45675208	45675408	+	967.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15115.0	NM_013907	30838.0	Mm.254739	NM_013907	ENSMUSG00000040913	Fbxw4	Dac|Fbw4|SHFM3|SHSF3|dactylin|dactylyn	F-box and WD-40 domain protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-117481633-3	chr7	117481526	117481726	+	855.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175645, intron 2 of 11)	intron (NM_175645, intron 2 of 11)	100647.0	NM_175645	233781.0	Mm.461427	NM_175645	ENSMUSG00000030657	Xylt1	8030490L12	xylosyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-52763218-4	chr2	52763163	52763363	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur2|SINE|Alu	-21114.0	NM_019667	56324.0	Mm.263639	NM_019667	ENSMUSG00000055371	Stam2	1200004O12Rik|5730456G07Rik|BB145015|Hbp	signal transducing adaptor molecule (SH3 domain and ITAM motif) 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-4353005-4	chr18	4352898	4353098	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040328)	promoter-TSS (NR_040328)	-45.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-135980991-4	chr6	135980893	135981093	+	871.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008171, intron 4 of 14)	intron (NM_008171, intron 4 of 14)	192518.0	NM_008171	14812.0	Mm.436649	NM_008171	ENSMUSG00000030209	Grin2b	AW490526|GluN2B|NR2B|Nmdar2b	glutamate receptor, ionotropic, NMDA2B (epsilon 2)	protein-coding	-0.191389373137562	-0.170597167812042	0.862276043112125	-0.182574834290431	-0.190069555217837	-0.169090043855571	0.485071651384679	-0.181654988516109	-0.965847967540651	0.690040590861179	1
Merged-chr4-45297134-4	chr4	45297028	45297228	+	980.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027266)	promoter-TSS (NM_027266)	-40.0	NM_027266	69934.0	Mm.46761	NM_027266	ENSMUSG00000035601	Trmt10b	2610042J10Rik|Rg9mtd3|Rnmtd3	tRNA methyltransferase 10B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94356949-4	chr10	94356873	94357073	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 1 of 4)	intron (NM_001359762, intron 1 of 4)	45024.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-35983871-2	chr9	35983771	35983971	+	549.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A1-int|LTR|ERVL-MaLR	-133991.0	NR_030730	100041605.0	Mm.99350	NR_030730	ENSMUSG00000098705	Gm3428	-	predicted gene 3428	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-14277742-1	chr2	14277642	14277842	+	629.0	f0_balb.idr	intron (NM_008625, intron 10 of 29)	RLTR51A_Mm|LTR|ERVK?	16739.0	NR_030609	100124488.0		NR_030609	ENSMUSG00000077897	Mir511	Mirn511|mir-511|mmu-mir-511	microRNA 511	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-90788308-2	chr5	90788208	90788408	+	695.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_203320)	TTS (NM_203320)	2207.0	NM_203320	330122.0	Mm.244289	NM_203320	ENSMUSG00000029379	Cxcl3	Dcip1|Gm1960	chemokine (C-X-C motif) ligand 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-101997877-2	chr5	101997777	101997977	+	794.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 3 of 66)	B4A|SINE|B4	72044.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	-0.150953201429939	-0.136392182095599	0.519453455412769	0.154835282790156	0.32437468376543	-0.135314970177435	-0.140114901726263	-0.144205878693879	-1.07723007811291	0.648074813635422	1
Merged-chr5-115556383-4	chr5	115556246	115556446	+	906.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_133915)	TTS (NM_133915)	-3121.0	NM_007475	11837.0	Mm.5286	NM_007475	ENSMUSG00000067274	Rplp0	36B4|Arbp|L10E	ribosomal protein, large, P0	protein-coding	1.91233784215989	1.200816052388	1.62843111843677	2.76743015814577	2.52158567210273	1.47716355603667	2.21796550482165	1.59177301829235	0.00753015502744661	0.994324030328752	0.998431161219273
Merged-chr14-118178537-4	chr14	118178467	118178667	+	984.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F1|SINE|Alu	41440.0	NM_021434	58245.0	Mm.275411	NM_021434	ENSMUSG00000022131	Gpr180	AB041545|E130016I23Rik|Itr	G protein-coupled receptor 180	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-149549858-2	chr4	149549758	149549958	+	573.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023465, intron 4 of 4)	intron (NM_023465, intron 4 of 4)	4741.0	NM_001141930	67087.0	Mm.299735	NM_023465	ENSMUSG00000028988	Ctnnbip1	1110008O09Rik|2310001I19Rik|AW457332|Catnbip1|Icat	catenin beta interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-13668587-2	chr16	13668487	13668687	+	668.666687	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028761)	promoter-TSS (NM_028761)	-417.0	NM_001358453	74108.0	Mm.182350	NM_028761	ENSMUSG00000022685	Parn	1200003I18Rik|DAN	poly(A)-specific ribonuclease (deadenylation nuclease)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120548407-2	chr11	120548307	120548507	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033231, intron 1 of 4)	intron (NM_001033231, intron 1 of 4)	1320.0	NM_001033231	192173.0	Mm.262300	NM_001033231	ENSMUSG00000061111	Mcrip1	Fam195b	MAPK regulated corepressor interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36080594-2	chr1	36080494	36080694	+	754.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_015818, intron 1 of 1)	intron (NM_015818, intron 1 of 1)	12194.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-97910602-4	chr4	97910502	97910702	+	911.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010905, intron 2 of 10)	intron (NM_010905, intron 2 of 10)	132976.0	NM_010905	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-50149643-6	chr11	50149481	50149681	+	865.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029745, intron 6 of 20)	intron (NM_029745, intron 6 of 20)	18221.0	NM_029745	76795.0	Mm.290975	NM_029745	ENSMUSG00000036644	Tbc1d9b	-	TBC1 domain family, member 9B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-25968993-2	chr8	25968847	25969047	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029884, intron 4 of 17)	L1MC4a|LINE|L1	7797.0	NM_029884	52120.0	Mm.28326	NM_029884	ENSMUSG00000037260	Hgsnat	9430010M12Rik|AW208455|D8Ertd354e|Tmem76	heparan-alpha-glucosaminide N-acetyltransferase	protein-coding	0.737103043291313	0.481918895590826	1.06551158981667	0.467029623751704	1.13964624085306	1.12993554653656	0.664295892109609	0.468166938466448	0.903186846725804	0.590753270572524	1
Merged-chr2-139379384-4	chr2	139379285	139379485	+	993.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-114528.0	NM_001356507	228677.0	Mm.100450	NM_175467	ENSMUSG00000039092	Sptlc3	C130053K05Rik	serine palmitoyltransferase, long chain base subunit 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-60878882-4	chr11	60878800	60879000	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001168507, exon 1 of 3)	5' UTR (NM_001168507, exon 1 of 3)	138.0	NM_173453	216821.0	Mm.28063	NM_173453	ENSMUSG00000043284	Tmem11	5730466P16Rik|AA409091	transmembrane protein 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-173626917-1	chr1	173626817	173627017	+	549.0	f1_balb.idr	Intergenic	Intergenic	-3942.0	NM_175026	236312.0	Mm.447	NM_175026	ENSMUSG00000043263	Ifi209	4930422C14|AI447904|Ifix|Pyhin-1|Pyhin1	interferon activated gene 209	protein-coding	-0.371017157805094	-0.358333153049781	-0.362493888846312	-0.365700521114218	-0.370226793942338	0.140668998123901	0.213026427282391	-0.199458346159195	3.61957220697359	0.13880386447596	1
Merged-chr5-135855264-2	chr5	135855164	135855364	+	744.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_021403, intron 8 of 14)	intron (NM_021403, intron 8 of 14)	-32655.0	NM_013560	15507.0	Mm.13849	NM_013560	ENSMUSG00000004951	Hspb1	27kDa|Hsp25	heat shock protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-99469847-4	chr9	99469767	99469967	+	705.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028123)	promoter-TSS (NR_028123)	-554.0	NR_028123	69797.0	Mm.307159	NR_028123	ENSMUSG00000046242	1600029I14Rik	-	RIKEN cDNA 1600029I14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-13590872-2	chr1	13590772	13590972	+	880.7999880000001	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028173)	promoter-TSS (NM_028173)	-962.0	NM_028173	72265.0	Mm.28765	NM_028173	ENSMUSG00000025935	Tram1	1810049E02Rik|TRAMP	translocating chain-associating membrane protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81502847-4	chr10	81502734	81502934	+	877.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010304, exon 7 of 7)	3' UTR (NM_010304, exon 7 of 7)	-2697.0	NM_010102	13611.0	Mm.33065	NM_010102	ENSMUSG00000044199	S1pr4	Edg6|Lpc1|S1p4	sphingosine-1-phosphate receptor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-12540426-2	chr13	12540326	12540526	+	946.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-19976.0	NM_133643	171211.0	Mm.159671	NM_133643	ENSMUSG00000095105	Edaradd	1810032E07Rik|5830469M23Rik|A630043P06|cr	EDAR (ectodysplasin-A receptor)-associated death domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-73571654-2	chr18	73571554	73571754	+	977.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1051.0	NM_001039214	240396.0	Mm.24131	NM_001039214	ENSMUSG00000037253	Mex3c	A130001D14Rik|BC035207|BM-013|Rkhd2	mex3 RNA binding family member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99722636-2	chr15	99722536	99722736	+	676.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_010271, intron 7 of 7)	intron (NM_010271, intron 7 of 7)	1838.0	NR_155353	102638434.0	Mm.364438	NR_155353		Gm16537	-	predicted gene 16537	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-10288169-2	chr2	10288069	10288269	+	572.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-82282.0	NM_001198808	353282.0	Mm.329991	NM_177386	ENSMUSG00000061186	Sfmbt2	D2Wsu23e|D330030P06Rik	Scm-like with four mbt domains 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-101752650-2	chr13	101752550	101752750	+	605.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077495, intron 2 of 15)	intron (NM_001077495, intron 2 of 15)	15567.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-61602301-1	chr8	61602201	61602401	+	625.0	f1_c57bl6.idr	intron (NM_001293772, intron 10 of 21)	MIRc|SINE|MIR	-11132.0	NM_001293774	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	-1.43172712806865	-1.3992492906874	-1.40907085678131	-1.41713858359971	-0.932192548427885	-1.39712091634321	-1.40684746950024	-1.41569446435649	2.19283191591698	0.528233640655333	1
Merged-chr1-37356743-2	chr1	37356643	37356843	+	731.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030266, intron 1 of 25)	intron (NM_030266, intron 1 of 25)	-12474.0	NM_172971	269180.0	Mm.5294	NM_030266	ENSMUSG00000026113	Inpp4a	107kDa|9630012D15|D130048C09Rik|R74740	inositol polyphosphate-4-phosphatase, type I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-9088138-2	chr5	9088038	9088238	+	718.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12599.0	NM_001081029	652925.0	Mm.439954	NM_001081029	ENSMUSG00000079659	Tmem243	4930420K17Rik|E030031F02Rik	transmembrane protein 243, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-94677464-4	chr11	94677357	94677557	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145828)	promoter-TSS (NM_145828)	36.0	NM_145828	217119.0	Mm.100638	NM_145828	ENSMUSG00000020868	Xylt2	E030002B02Rik|XT-II|XT2|xylT-II	xylosyltransferase II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-22801542-4	chr14	22801445	22801645	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028275, intron 5 of 6)	intron (NM_028275, intron 5 of 6)	-258747.0	NR_046307	74896.0	Mm.444661	NR_046307	ENSMUSG00000114412	4930405A10Rik	4930456G20Rik	RIKEN cDNA 4930405A10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139389878-4	chr5	139389798	139389998	+	876.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001038703)	promoter-TSS (NM_001038703)	-6.0	NM_001038703	80290.0	Mm.270003	NM_030258	ENSMUSG00000044197	Gpr146	BC003323|D830046C22Rik|PGR8	G protein-coupled receptor 146	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-8795552-4	chr10	8795443	8795643	+	954.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 4 of 19)	intron (NM_175155, intron 4 of 19)	90527.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-174175632-3	chr1	174175532	174175732	+	685.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011465, intron 2 of 51)	intron (NM_011465, intron 2 of 51)	2856.0	NM_011465	20739.0	Mm.200611	NM_011465	ENSMUSG00000026532	Spta1	AF093576|AI451697|Spna-1|Spna1|ha|ihj|nmf4|sph	spectrin alpha, erythrocytic 1	protein-coding	3.22704298160671	1.47798470924566	2.70429735872536	2.07354452083668	3.45461492484066	1.78738300595629	2.47516449964506	3.41416036349648	0.751967101813364	0.389379594033979	0.878578793881975
Merged-chr10-75943337-1	chr10	75943237	75943437	+	682.0	f0_balb.idr	Intergenic	L1ME2|LINE|L1	-2665.0	NM_001277132	333670.0	Mm.291320	NM_001037714	ENSMUSG00000050157	Gm867	Gm736	predicted gene 867	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-44993549-4	chr16	44993451	44993651	+	921.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49873.0	NM_001128132	74603.0	Mm.297337	NM_027578	ENSMUSG00000036172	Cd200r3	4733401I18Rik|4833409J19Rik|AI505817|BB106877|mCD200RLb	CD200 receptor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-33947542-4	chr17	33947456	33947656	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020603, intron 10 of 14)	intron (NM_020603, intron 10 of 14)	3932.0	NM_019420	54218.0	Mm.11132	NM_019420	ENSMUSG00000067370	B3galt4	Gal-T2|Galt2	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 4	protein-coding	3.73336952597983	3.72347460855749	4.66192332566122	3.86625276984366	3.49545267641809	3.05787513105292	4.12917078591158	4.40758736007236	-0.247117290125893	0.6314907114248	0.982079922850444
Merged-chr1-154274909-3	chr1	154274814	154275014	+	747.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MEg|LINE|L1	-18008.0	NR_040629	78112.0	Mm.401935	NR_040629	ENSMUSG00000099933	4930452N14Rik	-	RIKEN cDNA 4930452N14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-100214765-4	chr6	100214663	100214863	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	G-rich|Low_complexity|Low_complexity	72595.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-105417865-1	chr2	105417765	105417965	+	619.0	f0_balb.idr	Intergenic	Intergenic	-18546.0	NM_009037	19672.0	Mm.4876	NM_009037	ENSMUSG00000005973	Rcn1	Rcn	reticulocalbin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-64956746-4	chr1	64956619	64956819	+	970.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001039493, exon 1 of 8)	5' UTR (NM_001039493, exon 1 of 8)	105.0	NM_001039493	241075.0	Mm.239534	NM_175509	ENSMUSG00000051344	Plekhm3	9430067K14Rik|A230102O09Rik|AI449570|DAPR|Plekhm1l	pleckstrin homology domain containing, family M, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-59261831-2	chr3	59261731	59261931	+	829.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177855, intron 32 of 43)	intron (NM_177855, intron 32 of 43)	1154.0	NM_027571	70839.0	Mm.422675	NM_027571	ENSMUSG00000036353	P2ry12	2900079B22Rik|4921504D23Rik|P2Y12	purinergic receptor P2Y, G-protein coupled 12	protein-coding	-1.36015291771705	-1.32842431658676	-1.33874579108173	-1.34722415754512	-1.35969949349639	-1.32618761000664	-1.33640923549635	-0.791042329471244	2.42373733289067	0.484013421080845	1
Merged-chr12-33301854-3	chr12	33301767	33301967	+	849.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033436)	promoter-TSS (NM_001033436)	-648.0	NM_001033436	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-155624810-4	chr4	155624735	155624935	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040441)	promoter-TSS (NR_040441)	-19.0	NM_001347308	12537.0	Mm.267410	NM_007661	ENSMUSG00000029062	Cdk11b	AA989746|CDK11-p110|CDK11-p46|CDK11-p58|Cdc11b|Cdc2l1|Cdc2l2|Cdk11|p58	cyclin-dependent kinase 11B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139202098-2	chr5	139201998	139202198	+	577.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359496, intron 1 of 20)	ID_B1|SINE|B4	1461.0	NM_001359494	77053.0	Mm.210845	NM_024451	ENSMUSG00000036817	Sun1	4632417G13Rik|5730434D03Rik|Unc84a|mKIAA0810	Sad1 and UNC84 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-67234981-4	chr7	67234880	67235080	+	706.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001291191, exon 11 of 11)	exon (NM_001291191, exon 11 of 11)	12364.0	NM_001191051	75099.0	Mm.121691	NM_175215	ENSMUSG00000043831	Lysmd4	4930506D23Rik	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64268008-3	chr5	64267908	64268108	+	708.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 5 of 18)	intron (NM_001289514, intron 5 of 18)	37651.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31665047-3	chr14	31664952	31665152	+	741.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025295, intron 2 of 3)	intron (NM_025295, intron 2 of 3)	23995.0	NM_025295	26363.0	Mm.282679	NM_025295	ENSMUSG00000021900	Btd	-	biotinidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114797857-1	chr11	114797757	114797957	+	542.0	f1_c57bl6.idr	Intergenic	Intergenic	-1067.0	NM_001346772	217302.0	Mm.269127	NM_181749	ENSMUSG00000034677	Gpr142	PGR2	G protein-coupled receptor 142	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-84429514-1	chr3	84429414	84429614	+	682.333313	f0_balb.idr	Intergenic	Intergenic	-49593.0	NR_040752	75309.0	Mm.159497	NR_040752	ENSMUSG00000104004	4930565D16Rik	-	RIKEN cDNA 4930565D16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-45295395-2	chr9	45295295	45295495	+	819.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-23705.0	NM_001013373	214531.0	Mm.394987	NM_001013373	ENSMUSG00000037129	Tmprss13	BC010843|Tpmrss13	transmembrane protease, serine 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-21516480-4	chr17	21516367	21516567	+	878.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19072.0	NM_144515	22710.0	Mm.296100	NM_144515	ENSMUSG00000051341	Zfp52	KRAB11|Zfp-52|Zfp76|mszf23-2|mszf24|mszf34|mszf75|zfec29	zinc finger protein 52	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-84198021-2	chr1	84197939	84198139	+	557.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001003948, intron 1 of 2)	L1_Mus2|LINE|L1	20922.0	NR_105771	102465181.0		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76247792-3	chr15	76247698	76247898	+	850.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_105918)	promoter-TSS (NR_105918)	-393.0	NR_105918	102465575.0		NR_105918	ENSMUSG00000098625	Mir6953	Gm27738|mmu-mir-6953	microRNA 6953	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70395272-4	chr14	70395154	70395354	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021308, intron 15 of 22)	intron (NM_021308, intron 15 of 22)	33840.0	NM_021308	57746.0	Mm.85253	NM_021308	ENSMUSG00000033644	Piwil2	Piwil1l|mili	piwi-like RNA-mediated gene silencing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-67260188-4	chr17	67260087	67260287	+	955.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	94272.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	3.65297749972717	3.76603980465655	2.88993685697655	2.99445224004082	1.84024131557118	2.48160250380411	2.80274933162361	1.43455965434421	-2.09589007577964	0.00611768638469964	0.0774806487441516
Merged-chr11-118165450-2	chr11	118165350	118165550	+	980.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001112699, exon 13 of 13)	3' UTR (NM_001112699, exon 13 of 13)	-36231.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-31598741-2	chr5	31598641	31598841	+	621.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER5A|DNA|hAT-Charlie	-15210.0	NM_025796	66845.0	Mm.120763	NM_025796	ENSMUSG00000106918	Mrpl33	0610009M10Rik|L33mt|MRP-L33	mitochondrial ribosomal protein L33	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140379399-4	chr5	140379301	140379501	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172277, intron 1 of 10)	intron (NM_172277, intron 1 of 10)	9907.0	NM_172277	231834.0	Mm.27098	NM_172277	ENSMUSG00000029560	Snx8	B130023O14Rik	sorting nexin 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21796981-2	chr9	21796881	21797081	+	750.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145611, intron 1 of 11)	intron (NM_145611, intron 1 of 11)	1565.0	NM_145611	235041.0	Mm.257371	NM_145611	ENSMUSG00000032194	Kank2	AI504612|Ankrd25|BC010245	KN motif and ankyrin repeat domains 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191395775-2	chr1	191395675	191395875	+	813.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144880, intron 1 of 12)	intron (NM_144880, intron 1 of 12)	1266.0	NM_144880	226849.0	Mm.205569	NM_144880	ENSMUSG00000026626	Ppp2r5a	PR61alpha	protein phosphatase 2, regulatory subunit B', alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100939556-4	chr11	100939463	100939663	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011486)	promoter-TSS (NM_011486)	-23.0	NM_011486	20848.0	Mm.249934	NM_011486	ENSMUSG00000004040	Stat3	1110034C02Rik|AW109958|Aprf	signal transducer and activator of transcription 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-87116921-3	chr15	87116824	87117024	+	625.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-427375.0	NM_001252310	106014.0	Mm.244319	NM_134096	ENSMUSG00000054863	Fam19a5	TAFA5|Tafa-5|Tara-5	family with sequence similarity 19, member A5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128359216-4	chr2	128359089	128359289	+	989.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028590, intron 1 of 2)	ORR1D2|LTR|ERVL-MaLR	70162.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	3.43765375858626	2.48538191312965	2.84861700318595	3.7301083360482	3.905593802866	2.97330196021523	3.38290984548053	2.64946049253023	0.161878031225713	0.80344854359738	0.998431161219273
Merged-chr19-10880919-3	chr19	10880815	10881015	+	725.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134142, intron 1 of 3)	intron (NM_134142, intron 1 of 3)	828.0	NM_134142	68539.0	Mm.251890	NM_134142	ENSMUSG00000034659	Tmem109	1110006I15Rik|AA958958|C77652	transmembrane protein 109	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-16995185-3	chr10	16995077	16995277	+	806.888855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038020, intron 1 of 8)	intron (NR_038020, intron 1 of 8)	100605.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-19713243-4	chr14	19713131	19713331	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6B|LTR|ERVK	-38026.0	NM_008695	18074.0	Mm.20348	NM_008695	ENSMUSG00000021806	Nid2	AW547149|Ly111|NID-2|entactin-2|nidogen-2	nidogen 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-118820068-4	chr10	118819975	118820175	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48828.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-123103258-2	chr8	123103252	123103452	+	730.375	f1_balb.idr|f1_c57bl6.idr	TTS (NR_028128)	TTS (NR_028128)	294.0	NR_028128	100302565.0		NR_028128		Snord68	MBII-202	small nucleolar RNA, C/D box 68	snoRNA	0.917115178736623	0.804151160896277	1.64826459527888	1.22348183496949	0.922116995794406	0.806256059201164	1.66160138278959	1.23008123064562	0.037750459211729	0.978854334657868	0.998431161219273
Merged-chr13-97205374-6	chr13	97205306	97205506	+	930.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7049.0	NM_010422	15212.0	Mm.27816	NM_010422	ENSMUSG00000021665	Hexb	-	hexosaminidase B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-98002216-2	chr15	98002116	98002316	+	634.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_031163, intron 1 of 53)	CpG	2508.0	NM_031163	12824.0	Mm.2423	NM_031163	ENSMUSG00000022483	Col2a1	Col2|Col2a|Col2a-1|Del1|Dmm|Lpk|Rgsc856	collagen, type II, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114995024-3	chr11	114994932	114995132	+	826.311096	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13B1|LTR|ERVK	-5146.0	NM_145437	217305.0	Mm.275986	NM_145437	ENSMUSG00000034641	Cd300ld	4732429D16Rik|CLM5|Cd300ld1|LMIR4|MAIR-IV|clm-5	CD300 molecule like family member d	protein-coding	3.50014825780277	3.69009718584788	3.19535803716115	4.21544157218151	3.15041637086728	3.87117924554543	4.06081446500033	2.42621664041623	-0.278469586182582	0.637531333709907	0.982417279970648
Merged-chr4-137991696-1	chr4	137991596	137991796	+	571.0	f1_balb.idr	Intergenic	Intergenic	-1760.0	NM_001256198	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	-0.33960431090387	-0.605803199812473	-0.609699001720728	-0.612708609340272	0.20540121388823	-0.604925814857733	-0.608839265788537	-0.612182593635148	1.85767266795997	0.512731886048049	1
Merged-chr7-45528535-2	chr7	45528436	45528636	+	962.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_148927, intron 1 of 19)	intron (NM_148927, intron 1 of 19)	2206.0	NM_148927	69217.0	Mm.274158	NM_148927	ENSMUSG00000040428	Plekha4	2410005C22Rik|C88169|Pepp1	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-76345375-4	chr10	76345280	76345480	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081419)	promoter-TSS (NM_001081419)	-89.0	NM_001081419	64451.0	Mm.33183	NM_001081419	ENSMUSG00000020231	Dip2a	4931420H10Rik|AI426328|Dip2|Kiaa0184-hp|mKIAA0184	disco interacting protein 2 homolog A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-69090335-3	chr8	69090241	69090441	+	879.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007509, intron 1 of 13)	intron (NM_007509, intron 1 of 13)	-1119.0	NM_153054	110877.0	Mm.19301	NM_153054	ENSMUSG00000036330	Slc18a1	4832416I10Rik|Vat1|Vmat1	solute carrier family 18 (vesicular monoamine), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-60818749-2	chr2	60818649	60818849	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001141932, intron 2 of 14)	intron (NM_001141932, intron 2 of 14)	62689.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4119646-2	chr19	4119565	4119765	+	599.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_016666, intron 2 of 6)	B1_Mur3|SINE|Alu	1910.0	NM_001276284	11632.0	Mm.10433	NM_016666	ENSMUSG00000024847	Aip	AA408703|AW476050|Ara9|D19Bwg1412e|Fkbp16|Xap2	aryl-hydrocarbon receptor-interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-123478576-4	chr8	123478510	123478710	+	955.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028260, intron 1 of 15)	RMER15|LTR|ERVL	748.0	NR_028260	114896.0	Mm.287475	NM_054070	ENSMUSG00000031967	Afg3l1	1700047G05Rik|3110061K15Rik	AFG3-like AAA ATPase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-100620840-2	chr15	100620740	100620940	+	687.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_011873)	TTS (NM_011873)	5178.0	NM_011873	23994.0	Mm.486175	NM_011873	ENSMUSG00000000346	Dazap2	AI314727|Brbp|Gcap28|Prtb|gt6-12|mKIAA0058	DAZ associated protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-121951153-4	chr8	121951106	121951306	+	988.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016812, intron 1 of 13)	CpG	714.0	NM_001285983	53325.0	Mm.287163	NM_016812	ENSMUSG00000025316	Banp	AA408158|SMAR1	BTG3 associated nuclear protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-133083957-2	chr1	133083857	133084057	+	732.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001099276, intron 12 of 32)	intron (NM_001099276, intron 12 of 32)	37945.0	NM_001099276	240752.0	Mm.387308	NM_001099276	ENSMUSG00000026447	Pik3c2b	C330011J12Rik|Gm199|PI3K-C2beta|PI3KC2beta	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-66039727-2	chr4	66039627	66039827	+	918.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_207109, intron 5 of 22)	Lx4A|LINE|L1	364756.0	NM_019514	56079.0	Mm.445312	NM_019514	ENSMUSG00000028373	Astn2	1d8|Astnl|bM452J22.1	astrotactin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-138257064-2	chr2	138256964	138257164	+	704.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025431, intron 1 of 4)	CpG	480.0	NM_001025431	228662.0	Mm.153405	NM_145534	ENSMUSG00000062098	Btbd3	mKIAA0952	BTB (POZ) domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135942370-4	chr4	135942284	135942484	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-4064.0	NM_008254	15356.0	Mm.482102	NM_008254	ENSMUSG00000028672	Hmgcl	AW476067|HL	3-hydroxy-3-methylglutaryl-Coenzyme A lyase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65566726-2	chr9	65566626	65566826	+	926.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153119, intron 2 of 5)	Lx8|LINE|L1	13361.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99833268-3	chr7	99833178	99833378	+	720.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4861.0	NM_016720	50877.0	Mm.103703	NM_016720	ENSMUSG00000035239	Neu3	-	neuraminidase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-35092662-1	chr7	35092562	35092762	+	563.5	f0_balb.idr	Intergenic	PB1D10|SINE|Alu	-26631.0	NM_001287521	12606.0	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-97345933-4	chr5	97345826	97346026	+	996.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46404.0	NM_001033191	97243.0	Mm.11746	NM_001033191	ENSMUSG00000046000	Naa11	Ard1b|Ard2|C80008	N(alpha)-acetyltransferase 11, NatA catalytic subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-119512702-2	chr8	119512602	119512802	+	563.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001167910, intron 21 of 22)	intron (NM_001167910, intron 21 of 22)	-11004.0	NM_001009950	234788.0	Mm.302096	NM_001009950	ENSMUSG00000034224	Slc38a8	Gm587	solute carrier family 38, member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-135516502-4	chr1	135516449	135516649	+	882.2291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173437, intron 3 of 28)	intron (NM_173437, intron 3 of 28)	-61866.0	NR_049188	100885827.0		NR_049188	ENSMUSG00000093515	Mir1231	Gm23720|mir-1231|mmu-mir-1231	microRNA 1231	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-79274301-2	chr7	79274201	79274401	+	813.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_018811, intron 1 of 10)	intron (NM_018811, intron 1 of 10)	1035.0	NM_018811	54608.0	Mm.365490	NM_018811	ENSMUSG00000039202	Abhd2	2210009N18Rik|LABH2|Labh-2	abhydrolase domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-103114634-3	chr11	103114530	103114730	+	797.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1695.0	NM_138753	192231.0	Mm.8763	NM_138753	ENSMUSG00000048878	Hexim1	7330426E13Rik|CLP-1|Clp1|HIS1	hexamethylene bis-acetamide inducible 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-63119903-4	chr1	63119812	63120012	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045914, intron 1 of 3)	intron (NR_045914, intron 1 of 3)	5172.0	NR_045914	100380944.0	Mm.392955	NR_045914	ENSMUSG00000084799	Ino80dos	Gm11602	INO80 complex subunit D, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-148553527-2	chr5	148553448	148553648	+	912.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011908)	promoter-TSS (NM_011908)	-760.0	NM_001359199	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	0.342805062660842	0.602194280269245	0.194128855338951	0.187610661013647	0.178296237039333	0.765384049487153	1.23417906961667	0.188753636235894	1.98681691558638	0.304480056522645	1
Merged-chr9-124144497-2	chr9	124144397	124144597	+	868.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR12BD_Mm|LTR|ERVK	22954.0	NM_009917	12774.0	Mm.14302	NM_009917	ENSMUSG00000079227	Ccr5	AM4-7|CD195|Cmkbr5	chemokine (C-C motif) receptor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-65941241-4	chr3	65941134	65941334	+	987.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	17015.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-85451974-4	chr6	85451873	85452073	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163427)	promoter-TSS (NM_001163427)	-3.0	NR_028081	73327.0	Mm.379221	NM_028505	ENSMUSG00000030008	Pradc1	1700040I03Rik|Pap21	protease-associated domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-73134759-3	chr15	73134652	73134852	+	563.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153178, intron 3 of 18)	MTD|LTR|ERVL-MaLR	44340.0	NM_053068	93696.0	Mm.23095	NM_053068	ENSMUSG00000068391	Chrac1	2410152E03Rik|2810406L04Rik|YCL1	chromatin accessibility complex 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-118894034-4	chr10	118893950	118894150	+	938.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25147.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-96153226-3	chr7	96153138	96153338	+	788.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18006.0	NM_001310762	23966.0	Mm.254610	NM_011858	ENSMUSG00000048078	Tenm4	Doc4|ELM2|Odz4|R75022|Ten-m4|l(7)-3Rn|l7Rn3|mKIAA1302	teneurin transmembrane protein 4	protein-coding	0.444536468912631	0.477819978604826	0.674340655758075	1.07407943921237	1.00835758525515	0.480216863484033	1.60557100930219	0.656428035789891	1.51949808647649	0.356564798621734	0.85378439273359
Merged-chr6-145866739-4	chr6	145866632	145866832	+	993.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1312.0	NM_001271768	79362.0	Mm.154529	NM_024469	ENSMUSG00000030256	Bhlhe41	6430520M22Rik|Bhlhb2l|Bhlhb3|DEC2|Sharp1	basic helix-loop-helix family, member e41	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-44733732-2	chr10	44733632	44733832	+	740.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-274984.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-64256746-3	chr15	64256647	64256847	+	801.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 3 of 28)	intron (NM_001276461, intron 3 of 28)	55926.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94552327-4	chr10	94552222	94552422	+	985.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359760, intron 1 of 3)	intron (NM_001359760, intron 1 of 3)	1402.0	NM_001359760	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-121509577-2	chr10	121509480	121509680	+	780.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33330.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	1.57695475066801	1.27090125061663	2.40016652393477	2.22422892512466	2.85670551437933	1.27792090427634	2.31076257984673	2.52684978494085	0.961627451657746	0.351520657511786	0.851869250625437
Merged-chr7-102019510-4	chr7	102019437	102019637	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001360748, exon 9 of 9)	3' UTR (NM_001360748, exon 9 of 9)	-1382.0	NM_010531	16068.0	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-34765945-3	chr8	34765848	34766048	+	757.944458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER34A1|LTR|ERV1	-41662.0	NM_176933	319520.0	Mm.170276	NM_176933	ENSMUSG00000031530	Dusp4	2700078F24Rik|AI844617|BB104621|E130306H24Rik|MKP2	dual specificity phosphatase 4	protein-coding	3.0652330383289	2.00773112622837	2.20184101196647	2.87517735667858	1.62371364396602	1.10562594477262	1.07096581559367	1.03982819183274	-3.93551560714508	0.00102746495434129	0.0199259555854312
Merged-chr10-40477075-4	chr10	40476976	40477176	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198164, intron 10 of 11)	intron (NM_198164, intron 10 of 11)	-93286.0	NM_027572	70840.0	Mm.332570	NM_027572	ENSMUSG00000019834	Slc22a16	4921504E14Rik|CT2|FLIPT2|OCT6|OKB1	solute carrier family 22 (organic cation transporter), member 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-4790510-4	chr18	4790436	4790636	+	834.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus4|LINE|L1	-21950.0	NR_045881	100038439.0	Mm.387569	NR_045881	ENSMUSG00000097043	Gm10556	-	predicted gene 10556	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99383240-2	chr15	99383140	99383340	+	830.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-9707.0	NM_026669	110213.0	Mm.16769	NM_026669	ENSMUSG00000023010	Tmbim6	5031406P05Rik|Bi1|Tegt	transmembrane BAX inhibitor motif containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36122414-1	chr18	36122314	36122514	+	607.5	f0_balb.idr	intron (NM_001167891, intron 1 of 9)	intron (NM_001167891, intron 1 of 9)	16211.0	NR_015571	74966.0	Mm.379238	NM_030089		4930471G03Rik	1700007N01Rik	RIKEN cDNA 4930471G03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-155417025-3	chr1	155416924	155417124	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011273, intron 1 of 14)	CpG	420.0	NM_011273	19775.0	Mm.266215	NM_011273	ENSMUSG00000026469	Xpr1	Rmc-1|Rmc1|Sxv|Syg1|XR	xenotropic and polytropic retrovirus receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-72030701-4	chr9	72030590	72030790	+	734.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011544, intron 3 of 20)	intron (NM_011544, intron 3 of 20)	80511.0	NM_001253862	21406.0	Mm.171615	NM_011544	ENSMUSG00000032228	Tcf12	A130037E08Rik|ALF1|HEB|HEBAlt|HTF-4|HTF4|ME1|REB|bHLHb20	transcription factor 12	protein-coding	1.95296784890084	1.32962959024333	3.14360423842625	2.70765481411275	2.79968317547713	2.05575238369895	1.30017672116523	2.44492466415105	-0.415537171631671	0.678479093805606	0.994999283375466
Merged-chr16-11550551-3	chr16	11550458	11550658	+	834.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028964, intron 14 of 20)	intron (NM_028964, intron 14 of 20)	144910.0	NM_001290148	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-93191065-2	chr10	93190897	93191097	+	658.291626	f0_c57.idr|f1_c57bl6.idr	intron (NM_146239, intron 1 of 16)	intron (NM_146239, intron 1 of 16)	28212.0	NR_035452	100316689.0		NR_035452	ENSMUSG00000089214	Mir1931	mir-1931|mmu-mir-1931	microRNA 1931	ncRNA	1.08689825944273	0.128101436548491	0.120771643244077	0.799813567880692	0.408199353564214	0.129745688105711	0.12239334773406	0.11607323606118	-2.75875811800561	0.197218941023492	1
Merged-chr1-144349198-2	chr1	144349098	144349298	+	692.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	-100094.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-69297253-1	chr12	69297153	69297353	+	699.666687	f0_c57.idr	intron (NM_027117, intron 1 of 12)	CpG	572.0	NM_027117	69554.0	Mm.234368	NM_027117	ENSMUSG00000020978	Klhdc2	2310022K15Rik|D12Ertd522e|HCLP-1|LCP	kelch domain containing 2	protein-coding	1.46869873783859	2.11057999009781	1.90535872947226	1.11736304815564	2.46936093708878	2.54868243326792	1.77202291101804	1.35743019889016	1.12418258961583	0.291788179004529	0.796128548904676
Merged-chr3-81981727-4	chr3	81981617	81981817	+	928.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5989.0	NM_019911	56720.0	Mm.258622	NM_019911	ENSMUSG00000028011	Tdo2	AA407491|TDO|TO|chky	tryptophan 2,3-dioxygenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-119069524-2	chr10	119069424	119069624	+	693.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19025.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-35267812-4	chr9	35267769	35267969	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175411)	promoter-TSS (NM_175411)	-12.0	NM_028040	71989.0	Mm.273515	NM_028040	ENSMUSG00000032044	Rpusd4	2410001E19Rik	RNA pseudouridylate synthase domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-42123707-3	chr9	42123597	42123797	+	695.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011436, intron 1 of 47)	intron (NM_011436, intron 1 of 47)	600.0	NM_011436	20660.0	Mm.121920	NM_011436	ENSMUSG00000049313	Sorl1	2900010L19Rik|AI596264|AW261561|LR11|SorLA|gp250|mSorLA	sortilin-related receptor, LDLR class A repeats-containing	protein-coding	0.74269394391428	1.64447272367874	1.47734858196843	0.583044637868407	1.14520316434009	0.607951393801953	0.989487328380486	0.584754905837197	-1.45463510436828	0.351312370486699	0.851869250625437
Merged-chr5-90223105-2	chr5	90223005	90223205	+	797.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_028088, intron 1 of 5)	intron (NR_028088, intron 1 of 5)	891.0	NR_028088	231430.0	Mm.319697	NM_001033310	ENSMUSG00000035505	Cox18	BC038311	cytochrome c oxidase assembly protein 18	protein-coding	-0.583449067377857	-1.02282152578373	-1.03400008326803	-1.03822883962362	-0.777224525718346	-1.02039908574442	-1.03146950288059	-1.03789690212328	-0.791518325477985	0.808258493497815	1
Merged-chr7-80717519-1	chr7	80717419	80717619	+	934.0	f1_balb.idr	intron (NM_016721, intron 36 of 37)	B1_Mus2|SINE|Alu	-28642.0	NM_173863	70461.0	Mm.392175	NM_173863	ENSMUSG00000030527	Crtc3	2610312F20Rik|6332415K15Rik|AI429792|BC011210|TORC3	CREB regulated transcription coactivator 3	protein-coding	0.251776627567568	0.10967350853757	0.0913074858479861	-0.0605019305793944	0.259124681227597	0.113817301199701	0.0953561179880903	-0.0600308504906412	0.0407872045483039	0.983499453477805	1
Merged-chr7-19076731-4	chr7	19076629	19076829	+	790.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010058, intron 1 of 4)	intron (NM_010058, intron 1 of 4)	529.0	NM_010058	13401.0	Mm.2852	NM_010058	ENSMUSG00000030410	Dmwd	DMR-N9|Dm9	dystrophia myotonica-containing WD repeat motif	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-23844165-4	chr5	23844072	23844272	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025394)	promoter-TSS (NM_025394)	-27.0	NM_025394	66169.0	Mm.291868	NM_025394	ENSMUSG00000028998	Tomm7	1110020J08Rik|AW047273|Tom7	translocase of outer mitochondrial membrane 7	protein-coding	3.13401337906509	1.4325288423981	2.62491896274955	2.64977255588859	2.07423340984791	1.44192108318753	2.93627590290278	3.13691855830912	-0.053263553003465	0.954669383624287	0.998431161219273
Merged-chr2-59289807-2	chr2	59289707	59289907	+	647.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 4 of 20)	intron (NM_175464, intron 4 of 20)	96875.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-113441921-7	chr2	113441845	113442045	+	951.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001285459, exon 1 of 17)	exon (NM_001285459, exon 1 of 17)	881.0	NM_001285459	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-19046160-2	chr10	19046060	19046260	+	580.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30750.0	NM_009397	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-83156249-2	chr8	83156149	83156349	+	565.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TTTTG)n|Simple_repeat|Simple_repeat	-9103.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	-0.790165559603664	-1.02489500587938	-1.03585533914581	-1.03984441570573	-0.903790072809063	-1.02251985593842	-0.719761904227202	-1.03952722498986	0.715062130495518	0.813535411749648	1
Merged-chr4-96621992-2	chr4	96621892	96622092	+	624.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	-30507.0	NM_028979	74519.0	Mm.458387	NM_028979	ENSMUSG00000015224	Cyp2j9	8430417E17Rik	cytochrome P450, family 2, subfamily j, polypeptide 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134671040-4	chr6	134670967	134671167	+	912.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170479, intron 2 of 3)	intron (NM_001170479, intron 2 of 3)	30127.0	NM_026371	67774.0	Mm.41892	NM_026371	ENSMUSG00000042992	Borcs5	5830457J20Rik|AW124643|Loh12cr1	BLOC-1 related complex subunit 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-33045850-4	chr12	33045748	33045948	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024478, intron 13 of 19)	intron (NM_001024478, intron 13 of 19)	47027.0	NM_001024478	68764.0	Mm.60083	NM_001024478	ENSMUSG00000035860	Cdhr3	1110049B09Rik|BB172694|Cdh28	cadherin-related family member 3	protein-coding	7.59066920767228	7.53345502728365	8.29129833530119	8.15469239253486	7.05837540271564	6.97346537686124	7.19532749111887	7.56480177194256	-0.741495032511062	0.000119111654375974	0.00351417069737142
Merged-chr10-127600928-1	chr10	127600828	127601028	+	1000.0	f1_c57bl6.idr	intron (NM_008512, intron 6 of 88)	intron (NM_008512, intron 6 of 88)	20220.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-4080724-4	chr7	4080612	4080812	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033568, intron 6 of 8)	intron (NR_033568, intron 6 of 8)	-17508.0	NM_001302676	52855.0	Mm.290880	NM_178611	ENSMUSG00000055541	Lair1	5133400O11Rik|BB115266|D7Bwg0421e|Lair-1	leukocyte-associated Ig-like receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19462084-2	chr7	19461984	19462184	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3590.0	NM_172279	232944.0	Mm.260504	NM_172279	ENSMUSG00000030397	Mark4	2410090P21Rik|C79806|Markl1	MAP/microtubule affinity regulating kinase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69421446-2	chr11	69421346	69421546	+	922.68335	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081330, intron 84 of 85)	intron (NM_001081330, intron 84 of 85)	-7771.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-65605601-2	chr4	65605501	65605701	+	970.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161782, intron 1 of 1)	intron (NM_001161782, intron 1 of 1)	615.0	NM_001161782	69807.0	Mm.22786	NM_053084	ENSMUSG00000051675	Trim32	1810045E12Rik|3f3|BBS11|Zfp117	tripartite motif-containing 32	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-85143447-1	chr8	85143347	85143547	+	1000.0	f1_balb.idr	Intergenic	Intergenic	-8477.0	NM_001037922	624855.0	Mm.390061	NM_001037922	ENSMUSG00000062687	Cks1brt	EG624855|Gm6531	CDC28 protein kinase 1b, retrogene	protein-coding	-1.50625708474172	-1.47450015558371	-1.18188810879543	-1.49199236114635	-1.35376801888298	-1.47241902461194	-1.48192967816727	-1.49058029691424	-0.80106305596974	0.819335975698342	1
Merged-chr1-171143321-2	chr1	171143217	171143417	+	611.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025321, intron 3 of 5)	B2_Mm1a|SINE|B2	7286.0	NM_025321	66052.0	Mm.198138	NM_025321	ENSMUSG00000058076	Sdhc	0610010E03Rik|AI316496|AU019277	succinate dehydrogenase complex, subunit C, integral membrane protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-9018117-1	chr3	9018017	9018217	+	671.0	f1_c57bl6.idr	Intergenic	Intergenic	-13394.0	NM_001357075	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	0.535905425722124	1.27987587297616	1.53166959619719	0.551628544709916	1.10924007155815	1.2926644356598	0.563562336265091	0.553261986423139	-0.564466899547371	0.736777831037772	0.998431161219273
Merged-chr14-21891849-2	chr14	21891749	21891949	+	583.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42939.0	NM_026965	69156.0	Mm.11827	NM_026965	ENSMUSG00000021773	Comtd1	1810030M08Rik|MT773	catechol-O-methyltransferase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-78371758-2	chr10	78371658	78371858	+	553.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-20058.0	NM_053014	28169.0	Mm.141230	NM_053014	ENSMUSG00000001211	Agpat3	AW061257|AW493985|D10Jhu12e|lpaat3	1-acylglycerol-3-phosphate O-acyltransferase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-31619125-2	chr13	31619025	31619225	+	593.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6691.0	NM_010225	14238.0	Mm.125548	NM_010225	ENSMUSG00000038402	Foxf2	FREAC2|Fkh20|LUN	forkhead box F2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-3478161-4	chr13	3478071	3478271	+	963.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015522)	promoter-TSS (NR_015522)	-132.0	NR_015522	76937.0	Mm.487240	NR_015522	ENSMUSG00000097709	2810429I04Rik	AI256682	RIKEN cDNA 2810429I04 gene	ncRNA	-0.195717783930615	-0.180700181725321	-0.185616749465704	0.118622277048405	0.19281788384974	0.560180002329542	-0.184532101343063	-0.18874900399026	2.08791482262715	0.381288010178171	1
Merged-chr3-69239402-1	chr3	69239302	69239502	+	662.0	f1_c57bl6.idr	Intergenic	L1MC4|LINE|L1	16983.0	NM_027843	71619.0	Mm.98122	NM_027843	ENSMUSG00000098207	Arl14	9130014L17Rik|Arf7	ADP-ribosylation factor-like 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-47515786-3	chr14	47515686	47515886	+	728.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027414, intron 4 of 5)	L1MC5|LINE|L1	43225.0	NM_001146085	78938.0	Mm.11935	NM_030236	ENSMUSG00000037536	Fbxo34	2900057B08Rik|5830426G16Rik	F-box protein 34	protein-coding	3.94875673270166	4.11046330768604	2.65018692143024	4.10292137748026	2.12099291417404	2.77579135293332	1.87797567842746	2.95679238438105	-2.14814317837092	0.00147591828732907	0.0267493468449761
Merged-chr1-190826642-4	chr1	190826536	190826736	+	941.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178775, intron 8 of 14)	L1MDa|LINE|L1	85134.0	NM_178775	320119.0	Mm.220912	NM_178775	ENSMUSG00000089872	Rps6kc1	AA682037|B130003F20Rik|C80612|Rpk118	ribosomal protein S6 kinase polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-103924906-2	chr13	103924806	103925006	+	579.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-4320.0	NM_001005868	59079.0	Mm.277354	NM_021563	ENSMUSG00000021709	Erbin	1700028E05Rik|Erbb2ip|mKIAA1225	Erbb2 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-32866917-4	chr16	32866872	32867072	+	858.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172615, intron 1 of 18)	intron (NM_172615, intron 1 of 18)	1394.0	NM_001200038	100502698.0	Mm.327319	NM_172615	ENSMUSG00000035629	Rubcn	1700021K19Rik|5330403K09|Rubicon|mKIAA0226	RUN domain and cysteine-rich domain containing, Beclin 1-interacting protein	protein-coding	2.8260232021715	3.59542913243248	3.6677476568146	2.52935328036019	2.27013096777775	3.10194993772255	3.57139264536121	1.80820438364846	-0.629494975548457	0.396655297149339	0.883358600789196
Merged-chr1-161360202-2	chr1	161360102	161360302	+	915.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35236.0	NM_009452	22164.0	Mm.4994	NM_009452	ENSMUSG00000026700	Tnfsf4	Ath-1|Ath1|CD134L|OX-40L|Ox40l|TXGP1|Tnlg2b|Txgp1l|gp34	tumor necrosis factor (ligand) superfamily, member 4	protein-coding	0.855230812743178	0.468732058242294	0.459388394858992	0.91893851332771	1.23565843992278	0.470825765752142	1.29870480276017	0.453389660955372	1.1963636187321	0.496121984615031	1
Merged-chr11-29780049-2	chr11	29779949	29780149	+	547.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146016, intron 26 of 41)	intron (NM_146016, intron 26 of 41)	45619.0	NM_176829	216622.0	Mm.443260	NM_176829	ENSMUSG00000078157	4931440F15Rik	Fem1ab	RIKEN cDNA 4931440F15 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34972673-2	chr17	34972560	34972760	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_013558)	promoter-TSS (NM_013558)	-43.0	NM_013558	15482.0	Mm.14287	NM_013558	ENSMUSG00000007033	Hspa1l	Hsc70t|Msh5	heat shock protein 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-114371930-2	chr14	114371830	114372030	+	560.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-460035.0	NR_045661	75822.0	Mm.410813	NR_045661	ENSMUSG00000115320	4930524C18Rik	-	RIKEN cDNA 4930524C18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-51480567-4	chr10	51480463	51480663	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291893)	promoter-TSS (NM_001291893)	-49.0	NM_008147	14727.0	Mm.439661	NM_008147	ENSMUSG00000112023	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-23570566-4	chr13	23570436	23570636	+	787.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178196)	promoter-TSS (NM_178196)	684.0	NM_178187	319166.0	Mm.261665	NM_178187	ENSMUSG00000069272	Hist1h2ae	1190022L06	histone cluster 1, H2ae	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166085178-2	chr2	166085078	166085278	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252579, intron 8 of 20)	intron (NM_001252579, intron 8 of 20)	70107.0	NM_001355619	72043.0	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-58212578-2	chr15	58212478	58212678	+	852.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_026346, intron 1 of 8)	intron (NM_026346, intron 1 of 8)	2314.0	NM_026346	67731.0	Mm.25683	NM_026346	ENSMUSG00000022358	Fbxo32	4833442G10Rik|AI430017|ATROGIN1|Gm20361|MAFbx	F-box protein 32	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-75455518-4	chr7	75455418	75455618	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029332)	promoter-TSS (NM_029332)	-16.0	NM_029332	75547.0	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	6.69535814204196	6.71542834552935	6.92581998753962	6.75047943737847	6.54595152638579	6.81017747400912	6.29033096142803	6.84256612176815	-0.144677753855662	0.451457870954914	0.917962637394146
Merged-chr2-180225867-4	chr2	180225780	180225980	+	951.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081171)	promoter-TSS (NM_001081171)	-21.0	NM_001081171	16776.0	Mm.4339	NM_001081171	ENSMUSG00000015647	Lama5	AA408760|AA408762|AI853660|[a]5|laminin-511|mKIAA0533	laminin, alpha 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-59239421-4	chr4	59239313	59239513	+	984.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20638.0	NR_105031	101055769.0	Mm.421401	NR_105031		Gm12596	-	predicted gene 12596	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132298883-2	chr4	132298783	132298983	+	563.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	4473.0	NM_001081651	242681.0	Mm.331927	NM_001081651	ENSMUSG00000089687	Rab42	9530096D07Rik|Rab42-ps	RAB42, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126705609-3	chr8	126705498	126705698	+	730.833313	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	-112162.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	4.48319344051553	4.51239003419358	3.62733159140926	2.94454917669186	3.57314431781491	4.24710138638714	1.9844091659388	2.14676742192408	-1.0182839283177	0.141498068652388	0.587166414926684
Merged-chr10-126905782-4	chr10	126905700	126905900	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-4429.0	NM_001358970	68876.0	Mm.276769	NM_026858	ENSMUSG00000025436	Atp23	1110068E08Rik|2410012H02Rik|Xrcc6bp1	ATP23 metallopeptidase and ATP synthase assembly factor homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-44227125-4	chr5	44227021	44227221	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173764)	promoter-TSS (NM_173764)	-515.0	NM_173764	231225.0	Mm.30688	NM_173764	ENSMUSG00000046985	Tapt1	4932414K18Rik	transmembrane anterior posterior transformation 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-102067045-2	chr15	102066945	102067145	+	821.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-6728.0	NM_145625	75705.0	Mm.290022	NM_145625	ENSMUSG00000058655	Eif4b	2310046H11Rik|AL024095|C85189|Eif4a2	eukaryotic translation initiation factor 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-16140269-4	chr19	16140174	16140374	+	983.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008139, intron 1 of 6)	intron (NM_008139, intron 1 of 6)	7443.0	NM_008139	14682.0	Mm.439701	NM_008139	ENSMUSG00000024639	Gnaq	1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI	guanine nucleotide binding protein, alpha q polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-109463028-3	chr7	109462936	109463136	+	889.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170913, intron 10 of 19)	intron (NM_001170913, intron 10 of 19)	-23983.0	NM_054103	117229.0	Mm.389950	NM_054103	ENSMUSG00000031027	Stk33	4921505G21Rik|AW061264	serine/threonine kinase 33	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88424108-2	chr3	88424008	88424208	+	588.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001281795, intron 1 of 3)	PB1D10|SINE|Alu	1033.0	NM_178696	229517.0	Mm.301740	NM_178696	ENSMUSG00000050144	Slc25a44	6720482A19|B430110G05Rik	solute carrier family 25, member 44	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-95314048-4	chr1	95313941	95314141	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026321, exon 1 of 3)	exon (NM_026321, exon 1 of 3)	413.0	NM_026321	67698.0	Mm.272705	NM_026321	ENSMUSG00000051185	Fam174a	2310044D20Rik|Fam174|Naa6|Tmem157	family with sequence similarity 174, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-33028410-1	chr4	33028310	33028510	+	550.0	f0_balb.idr	non-coding (NR_036602, exon 2 of 2)	non-coding (NR_036602, exon 2 of 2)	2913.0	NR_036602	100504166.0	Mm.426309	NR_036602	ENSMUSG00000085037	4933421O10Rik	-	RIKEN cDNA 4933421O10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-60552968-2	chr2	60552868	60553068	+	569.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008867, intron 1 of 29)	intron (NM_008867, intron 1 of 29)	340.0	NM_008867	18779.0	Mm.5092	NM_008867	ENSMUSG00000054580	Pla2r1	Pla2-r|Pla2g1br|Pla2r	phospholipase A2 receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-128590975-4	chr1	128590938	128591138	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356509, intron 1 of 1)	CpG	1261.0	NM_009911	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	6.20463489594492	6.03883752222452	6.57947456344498	5.51719658414491	5.3864104289194	5.71496381733728	6.90812978689903	5.00103049096771	-0.2003483567856	0.698902270798016	0.998284579433352
Merged-chr19-14668012-2	chr19	14667912	14668112	+	988.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-69829.0	NM_001302947	21888.0	Mm.103638	NM_011600	ENSMUSG00000024642	Tle4	5730411M05Rik|AA792082|Bce-1|Bce1|ESTM13|ESTM14|Grg4|X83332|X83333|grg-4	transducin-like enhancer of split 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30454237-2	chr7	30454137	30454337	+	716.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_172898, intron 6 of 14)	intron (NM_172898, intron 6 of 14)	3278.0	NM_172898	243911.0	Mm.113908	NM_172898	ENSMUSG00000036915	Kirrel2	C330019F22Rik|NEPH3|NLG1	kirre like nephrin family adhesion molecule 2	protein-coding	-0.167088975762114	-0.151061967997539	-0.156300930227851	0.487090318672778	-0.014331529682873	-0.149882514404607	0.544803628197293	-0.159642620936952	0.378035956414617	0.871792799530542	1
Merged-chr2-91724098-2	chr2	91723952	91724152	+	907.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-6086.0	NM_172669	228361.0	Mm.436667	NM_172669	ENSMUSG00000040506	Ambra1	2310079H06Rik|A130023A14|AA474864|AV021921|D030051N19Rik|mKIAA1736	autophagy/beclin 1 regulator 1	protein-coding	0.732607500680444	0.349095117181586	0.340764793620828	0.664754858252003	0.325066235294537	1.01758434896145	0.342607931974879	1.19874725612409	1.39818438495374	0.448597967790417	1
Merged-chr1-75320452-2	chr1	75320352	75320552	+	612.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2815.0	NM_001110831	13437.0	Mm.24680	NM_016878	ENSMUSG00000026209	Dnpep	AA407814	aspartyl aminopeptidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-15729746-2	chr6	15729646	15729846	+	629.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175088, intron 2 of 4)	B1_Mm|SINE|Alu	9085.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139797014-2	chr5	139796914	139797114	+	889.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010757, intron 1 of 2)	intron (NM_010757, intron 1 of 2)	5478.0	NM_010757	17135.0	Mm.157313	NM_010757	ENSMUSG00000018143	Mafk	AW061068|NF-E2|Nfe2u	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein K (avian)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-25358740-4	chr15	25358641	25358841	+	914.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55023.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-37063977-4	chr8	37063884	37064084	+	866.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39746.0	NR_126063	414128.0	Mm.450976	NR_126063	ENSMUSG00000110242	G630064G18Rik	-	RIKEN cDNA G630064G18 gene	ncRNA	3.29081604940114	2.69885203517831	2.75319343344398	3.53739409087539	3.45291282952971	3.3628560843719	4.3441482587954	2.93835960517505	0.795097892496775	0.195263010830722	0.676057792597249
Merged-chr6-124904951-2	chr6	124904851	124905051	+	709.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008479, exon 7 of 8)	exon (NM_008479, exon 7 of 8)	6754.0	NM_008479	16768.0	Mm.4528	NM_008479	ENSMUSG00000030124	Lag3	CD223|LAG-3|Ly66	lymphocyte-activation gene 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128744876-2	chr10	128744776	128744976	+	859.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016811)	promoter-TSS (NM_016811)	208.0	NM_001358745	13139.0	Mm.291235	NM_016811	ENSMUSG00000025357	Dgka	80kDa|AW146112|Dagk1	diacylglycerol kinase, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-90226043-1	chr9	90225943	90226143	+	625.0	f0_c57.idr	exon (NM_194334, exon 6 of 13)	exon (NM_194334, exon 6 of 13)	44726.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-82234858-3	chr12	82234787	82234987	+	748.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167983, intron 2 of 23)	MLTR14|LTR|ERV1	64871.0	NM_001167983	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-42790534-1	chr18	42790434	42790634	+	962.0	f0_balb.idr	intron (NM_028392, intron 1 of 8)	intron (NM_028392, intron 1 of 8)	108972.0	NR_073583	72930.0	Mm.26134	NM_027531	ENSMUSG00000024500	Ppp2r2b	2900026H06Rik|6330404L05Rik|E130009M08Rik|PP2A-PR55B|PR55-BETA|SCA12	protein phosphatase 2, regulatory subunit B, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-134918610-4	chr4	134918526	134918726	+	964.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6B|LTR|ERVK	-3710.0	NM_027935	71817.0	Mm.88349	NM_027935	ENSMUSG00000028822	Tmem50a	3200001F09Rik|CAM|Smp1	transmembrane protein 50A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-119087737-1	chr9	119087637	119087837	+	555.0	f0_c57.idr	intron (NM_019676, intron 1 of 14)	intron (NM_019676, intron 1 of 14)	524.0	NM_001293648	18799.0	Mm.23963	NM_019676	ENSMUSG00000010660	Plcd1	AW212592|C79986	phospholipase C, delta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-27411129-2	chr14	27411029	27411229	+	618.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-17705.0	NM_028945	218850.0	Mm.247767	NM_028945	ENSMUSG00000040651	Fam208a	4732418E12|4933409E02Rik|D14Abb1e|MommeD6	family with sequence similarity 208, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-23742638-3	chr17	23742532	23742732	+	849.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_028416, exon 7 of 10)	exon (NM_028416, exon 7 of 10)	-2302.0	NM_023824	76498.0	Mm.491253	NM_023824	ENSMUSG00000023909	Paqr4	1500004C10Rik	progestin and adipoQ receptor family member IV	protein-coding	1.64248891263232	1.49675680263557	0.888116866757674	1.92075094482038	1.56176150823829	1.77682949215532	0.891824620911286	0.877300441076854	-0.660279535264297	0.627780062986508	0.980912176761026
Merged-chr5-114379410-4	chr5	114379328	114379528	+	719.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159941, intron 1 of 6)	intron (NM_001159941, intron 1 of 6)	1077.0	NM_001159941	330171.0	Mm.238285	NM_026145	ENSMUSG00000001098	Kctd10	AW536343|C87062|mBACURD3	potassium channel tetramerisation domain containing 10	protein-coding	0.0994656475718708	-0.226070725573979	-0.0708459384618781	-0.0855016807092085	-0.236457444111469	-0.225243036258271	0.190428111623724	-0.0829395220817575	-0.0904147517759044	0.966823946239517	1
Merged-chr11-120530062-2	chr11	120529962	120530162	+	562.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008101)	promoter-TSS (NM_008101)	-665.0	NM_008101	14527.0	Mm.22329	NM_008101	ENSMUSG00000025127	Gcgr	GR	glucagon receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33155240-2	chr16	33155140	33155340	+	622.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-29831.0	NM_176840	106326.0	Mm.486405	NM_176840	ENSMUSG00000022807	Osbpl11	9430097N02Rik|AI132306|AU019795|ORP-11	oxysterol binding protein-like 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-80080822-4	chr15	80080763	80080963	+	848.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013762, intron 4 of 9)	intron (NM_013762, intron 4 of 9)	2043.0	NR_028281	100302600.0		NR_028281		Snord43	MBII-47	small nucleolar RNA, C/D box 43	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-27718855-4	chr15	27718726	27718926	+	844.31665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13A|LTR|ERVK	-37284.0	NM_001242423	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-53177354-4	chr18	53177238	53177438	+	966.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357463, intron 1 of 15)	intron (NM_001357463, intron 1 of 15)	1046.0	NM_026386	67804.0	Mm.252171	NM_026386	ENSMUSG00000034484	Snx2	0610030A03Rik	sorting nexin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-4777394-3	chr7	4777307	4777507	+	851.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290423, intron 1 of 4)	intron (NM_001290423, intron 1 of 4)	734.0	NM_008350	16156.0	Mm.35814	NM_008350	ENSMUSG00000004371	Il11	IL-11	interleukin 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135153643-2	chr4	135153543	135153743	+	624.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019732, intron 2 of 5)	intron (NM_019732, intron 2 of 5)	32998.0	NM_019732	12399.0	Mm.378894	NM_019732	ENSMUSG00000070691	Runx3	AML2|Cbfa3|Pebp2a3	runt related transcription factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-58974532-2	chr15	58974432	58974632	+	888.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144800, intron 3 of 14)	intron (NM_144800, intron 3 of 14)	40722.0	NM_023172	66218.0	Mm.322294	NM_023172	ENSMUSG00000022354	Ndufb9	1190008J14Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-48968320-4	chr13	48968219	48968419	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033268)	promoter-TSS (NM_001033268)	207.0	NR_015601	68128.0	Mm.426304	NR_015601		Fam120aos	C030044B11Rik	family with sequence similarity 120A, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-129713004-1	chr6	129712904	129713104	+	631.0	f0_c57.idr	intron (NM_001012520, intron 1 of 5)	intron (NM_001012520, intron 1 of 5)	4128.0	NM_001012520	503550.0	Mm.376476	NM_001012520	ENSMUSG00000067610	Klri1	-	killer cell lectin-like receptor family I member 1	protein-coding	2.27462244507626	1.64504780774747	3.91632628390364	3.30411456703482	2.69333213163508	3.54624306578321	4.13919496417637	2.95475255371031	0.595396725307196	0.432834948682437	0.905151123801744
Merged-chr1-173425773-2	chr1	173425673	173425873	+	721.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013779, intron 1 of 8)	intron (NM_001013779, intron 1 of 8)	5169.0	NM_001013779	383619.0	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-97415682-4	chr15	97415564	97415764	+	986.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-168377.0	NM_001164602	105827.0	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-23867539-2	chr18	23867439	23867639	+	702.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162941, intron 5 of 7)	MLT1E1A|LTR|ERVL-MaLR	63569.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-126735495-2	chr4	126735395	126735595	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_198960, exon 2 of 7)	exon (NM_198960, exon 2 of 7)	774.0	NM_198960	332937.0	Mm.331881	NM_198960	ENSMUSG00000042477	Tfap2e	AI505200|AP-2e|Tcfap2e	transcription factor AP-2, epsilon	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91712550-2	chr2	91712488	91712688	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001356519, exon 1 of 2)	exon (NM_001356519, exon 1 of 2)	508.0	NM_001356519	241547.0	Mm.130331	NM_178724	ENSMUSG00000027243	Harbi1	D230010M03Rik	harbinger transposase derived 1	protein-coding	-0.0685371327588702	-0.0501449054748175	-0.0561408288456885	0.390096303319247	0.222969784324616	-0.0487971169051386	-0.0548159920559202	0.863976337599069	1.71183179952849	0.446219883145873	1
Merged-chr11-80508664-4	chr11	80508538	80508738	+	837.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_126552, exon 1 of 3)	non-coding (NR_126552, exon 1 of 3)	468.0	NR_126552	77417.0	Mm.437510	NR_126552	ENSMUSG00000085078	C030013C21Rik	-	RIKEN cDNA C030013C21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-58554232-4	chr15	58554180	58554380	+	997.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	138812.0	NM_145959	210998.0	Mm.3224	NM_145959	ENSMUSG00000037119	Fam91a1	AV220772|BC033609|D15Ertd621e|SKIN|mKIAA0493	family with sequence similarity 91, member A1	protein-coding	3.51579408004543	3.07872540983676	1.50533561730798	4.2192460182965	2.93397922506678	3.4853832333407	1.51940064139342	2.99729268775752	-0.778627187954137	0.569937487576703	0.962718661854691
Merged-chr9-50533523-4	chr9	50533419	50533619	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_133217, exon 12 of 12)	exon (NM_133217, exon 12 of 12)	-4878.0	NM_011220	19286.0	Mm.35856	NM_011220	ENSMUSG00000032067	Pts	PTPS	6-pyruvoyl-tetrahydropterin synthase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-50698669-1	chr15	50698569	50698769	+	1000.0	f0_balb.idr	intron (NM_001310481, intron 4 of 5)	intron (NM_001310481, intron 4 of 5)	190380.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	2.0173951203414	1.9166576816105	2.44631326182914	2.37638904105176	1.89257115096252	3.31118264509696	2.20594491548422	2.38882027119186	0.789532018002881	0.353905683416566	0.853132398390271
Merged-chr17-35679520-2	chr17	35679420	35679620	+	768.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5777.0	NM_010364	14885.0	Mm.10182	NM_010364	ENSMUSG00000001524	Gtf2h4	AW545633|BTF2 p52|p52	general transcription factor II H, polypeptide 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150862858-4	chr4	150862771	150862971	+	817.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133753, intron 1 of 3)	intron (NM_133753, intron 1 of 3)	7801.0	NM_133753	74155.0	Mm.318841	NM_133753	ENSMUSG00000028967	Errfi1	1300002F13Rik|AI788755|Mig-6|Mig6|RALT	ERBB receptor feedback inhibitor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-72496948-2	chr5	72496848	72497048	+	813.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001122756, intron 1 of 21)	intron (NM_001122756, intron 1 of 21)	7260.0	NM_016869	53419.0	Mm.332425	NM_016869	ENSMUSG00000005220	Corin	AV273130|Lrp4	corin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3328131-2	chr19	3328031	3328231	+	743.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_013495, intron 1 of 18)	intron (NM_013495, intron 1 of 18)	4830.0	NM_013495	12894.0	Mm.18522	NM_013495	ENSMUSG00000024900	Cpt1a	C730027G07|CPTI|Cpt1	carnitine palmitoyltransferase 1a, liver	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35202069-4	chr17	35201978	35202178	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001278601)	promoter-TSS (NM_001278601)	-71.0	NM_001278601	21926.0	Mm.1293	NM_013693	ENSMUSG00000024401	Tnf	DIF|TNF-a|TNF-alpha|TNFSF2|TNFalpha|Tnfa|Tnfsf1a|Tnlg1f	tumor necrosis factor	protein-coding	4.96535874486451	4.58726133314439	5.19853855518726	4.47714101793423	5.0296887833689	4.78162001049643	5.38518894792808	4.72860150868216	0.200782316605754	0.559723996620614	0.960321604678676
Merged-chr5-125273867-4	chr5	125273718	125273918	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	67276.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	3.39585396249892	2.64176821433033	3.57055925863941	2.87832219137136	1.27093900144874	1.43048098435617	2.28302076434578	2.48226750255325	-2.39874146061795	0.00502368171197066	0.0672671101174877
Merged-chr7-141165033-4	chr7	141164919	141165119	+	973.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001172100, intron 2 of 9)	intron (NM_001172100, intron 2 of 9)	3667.0	NM_001172101	107702.0	Mm.197493	NM_145135	ENSMUSG00000038650	Rnh1	AW546468|C80305|RNH	ribonuclease/angiogenin inhibitor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-11603228-4	chr2	11603112	11603312	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_152824)	promoter-TSS (NM_152824)	-13.0	NM_152824	76938.0	Mm.182769	NM_152824	ENSMUSG00000037197	Rbm17	2700027J02Rik	RNA binding motif protein 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-93305906-4	chr1	93305804	93306004	+	908.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178051)	promoter-TSS (NM_178051)	-25.0	NM_178051	69821.0	Mm.52809	NM_178051	ENSMUSG00000026273	Mterf4	1810059A23Rik|4933412H03Rik|Mterfd2	mitochondrial transcription termination factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-166921164-4	chr1	166921052	166921252	+	978.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	78578.0	NR_037988	100503962.0	Mm.216842	NR_037988	ENSMUSG00000102548	Gm16701	-	predicted gene, 16701	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-67430210-1	chr7	67430110	67430310	+	576.0	f0_balb.idr	Intergenic	MTD|LTR|ERVL-MaLR	-57352.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-30585249-1	chr12	30585149	30585349	+	672.0	f1_balb.idr	intron (NM_172049, intron 1 of 4)	intron (NM_172049, intron 1 of 4)	806.0	NM_172049	211986.0	Mm.34035	NM_172049	ENSMUSG00000043061	Tmem18	BC024093	transmembrane protein 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117346714-2	chr11	117346614	117346814	+	642.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113488, intron 1 of 9)	intron (NM_001113488, intron 1 of 9)	14401.0	NM_001113488	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5927925-2	chr17	5927825	5928025	+	675.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025664, intron 16 of 17)	intron (NM_025664, intron 16 of 17)	-13355.0	NM_001113353	20975.0	Mm.236068	NM_011523	ENSMUSG00000023805	Synj2	AI481647|SJ2|mKIAA0348	synaptojanin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-49449634-2	chr13	49449534	49449734	+	719.333374	f1_balb.idr|f1_c57bl6.idr	intron (NR_075085, intron 11 of 13)	intron (NR_075085, intron 11 of 13)	28020.0	NM_001276399	75678.0	Mm.390586	NM_199056	ENSMUSG00000021385	Ippk	1810043M15Rik|InsP6	inositol 1,3,4,5,6-pentakisphosphate 2-kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-11211530-2	chr16	11211430	11211630	+	773.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_038156, intron 1 of 2)	intron (NR_038156, intron 1 of 2)	8147.0	NR_038156	69918.0	Mm.440400	NR_038154		2610020C07Rik	-	RIKEN cDNA 2610020C07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-15974896-4	chr7	15974802	15975002	+	827.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081418, intron 13 of 13)	intron (NM_001081418, intron 13 of 13)	-7367.0	NM_153068	259300.0	Mm.138215	NM_153068	ENSMUSG00000074364	Ehd2	BC027084|C130052H20Rik	EH-domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-157313649-1	chr1	157313549	157313749	+	646.0	f0_balb.idr	intron (NM_177644, intron 1 of 17)	A-rich|Low_complexity|Low_complexity	-98703.0	NR_027984	69953.0	Mm.286863	NM_027274	ENSMUSG00000049881	2810025M15Rik	AI429618	RIKEN cDNA 2810025M15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-124659868-2	chr4	124659768	124659968	+	812.333374	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011141, exon 1 of 1)	3' UTR (NM_011141, exon 1 of 1)	2222.0	NM_011141	18991.0	Mm.297371	NM_011141	ENSMUSG00000090125	Pou3f1	Oct-6|Oct6|Otf-6|Otf6|Scip|Test1|Tst-1|Tst1	POU domain, class 3, transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-78630688-5	chr8	78630594	78630794	+	963.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001009981, intron 5 of 10)	intron (NM_001009981, intron 5 of 10)	121366.0	NM_001282108	76775.0	Mm.334631	NM_029736	ENSMUSG00000031684	Slc10a7	2410193C02Rik|P7	solute carrier family 10 (sodium/bile acid cotransporter family), member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-90258523-2	chr11	90258423	90258623	+	616.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026178, intron 2 of 6)	intron (NM_026178, intron 2 of 6)	9047.0	NM_026178	67468.0	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-57638870-2	chr9	57638770	57638970	+	911.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001304761, intron 2 of 14)	intron (NM_001304761, intron 2 of 14)	6783.0	NM_007783	12988.0	Mm.21974	NM_007783	ENSMUSG00000032312	Csk	AW212630|p50CSK	c-src tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-138250214-3	chr4	138250151	138250351	+	875.81665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001099631)	promoter-TSS (NM_001099631)	-160.0	NM_001099631	230863.0	Mm.482408	NM_001099631	ENSMUSG00000045349	Sh2d5	BC036961	SH2 domain containing 5	protein-coding	1.62507270769429	1.03328480080725	1.90484472438489	1.41657435691148	1.50709612456235	1.70328660773118	2.74200851778247	1.22991712490454	1.1504398870466	0.307988250768957	0.808952350279644
Merged-chr17-25837223-3	chr17	25837108	25837308	+	788.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144816)	promoter-TSS (NM_144816)	-81.0	NM_144816	214951.0	Mm.490018	NM_144816	ENSMUSG00000025735	Rhbdl1	Rhbdl	rhomboid like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-22932132-2	chr8	22932032	22932232	+	551.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081149, exon 16 of 18)	exon (NM_001081149, exon 16 of 18)	-42704.0	NM_001110783	11733.0	Mm.334444	NM_031158	ENSMUSG00000031543	Ank1	Ank-1|nb|pale	ankyrin 1, erythroid	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-119830093-2	chr8	119829993	119830193	+	828.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028071, intron 2 of 3)	intron (NM_028071, intron 2 of 3)	10486.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106739897-2	chr11	106739797	106739997	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-11329.0	NM_001271375	380732.0	Mm.343952	NM_001033435	ENSMUSG00000040528	Milr1	Allergin-1|Gm885|Mca32	mast cell immunoglobulin like receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-96084922-2	chr16	96084822	96085022	+	550.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2494.0	NM_145125	93871.0	Mm.240871	NM_145125	ENSMUSG00000022914	Brwd1	5330419I02Rik|D530019K20Rik|G1-403-16|Wdr9|repro5	bromodomain and WD repeat domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-67637782-4	chr13	67637683	67637883	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183146)	promoter-TSS (NM_183146)	-30.0	NM_183146	212281.0	Mm.342918	NM_183146	ENSMUSG00000021510	Zfp729a	A530054K11Rik|Rslcan3	zinc finger protein 729a	protein-coding	6.33194036271601	5.79065600959938	5.92018267654845	5.88919935929214	6.45523889943787	6.34994684420032	6.45675890525906	6.51903181734861	0.478421564731335	0.0275168146293481	0.223373979650148
Merged-chr13-44660006-4	chr13	44659918	44660118	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70756.0	NM_021878	16468.0	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-123960973-2	chr4	123960873	123961073	+	925.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43540.0	NM_017475	54170.0	Mm.220922	NM_017475	ENSMUSG00000028646	Rragc	AU041672|Gtr2|RAGC|TIB929|YGR163W	Ras-related GTP binding C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115676933-4	chr11	115676824	115677024	+	935.0125119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001313936, intron 2 of 5)	intron (NM_001313936, intron 2 of 5)	22610.0	NM_001313937	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16052958-4	chr7	16052878	16053078	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-18867.0	NM_001347559	666528.0	Mm.290718	NM_001099277	ENSMUSG00000078796	Zfp541	EG666528|Znf541	zinc finger protein 541	protein-coding	5.05944279326038	5.20580310129408	3.44488120290586	4.78367698347067	4.70460901355954	3.82365718916531	5.39547442854622	4.76680579002906	0.0147529459754211	0.973861418449248	0.998431161219273
Merged-chr9-107888856-1	chr9	107888756	107888956	+	540.0	f1_c57bl6.idr	intron (NM_028369, intron 1 of 5)	intron (NM_028369, intron 1 of 5)	727.0	NM_028369	72825.0	Mm.38037	NM_028369	ENSMUSG00000032583	Mon1a	2810468K17Rik	MON1 homolog A, secretory traffciking associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-97214310-2	chr15	97214210	97214410	+	976.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-32797.0	NM_172293	239647.0	Mm.130036	NM_172293	ENSMUSG00000044250	Pced1b	Fam113b	PC-esterase domain containing 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-123442399-1	chr8	123442299	123442499	+	543.0	f1_balb.idr	promoter-TSS (NM_001253783)	promoter-TSS (NM_001253783)	-557.0	NM_001253784	23854.0	Mm.275127	NM_054046	ENSMUSG00000001482	Def8	AI449518|D8Ertd713e|DEF-8	differentially expressed in FDCP 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-145083810-4	chr5	145083718	145083918	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019767)	promoter-TSS (NM_019767)	-51.0	NM_019767	56443.0	Mm.371610	NM_019767	ENSMUSG00000029621	Arpc1a	0610010H08Rik|1110030K07Rik|41kDa|AA407347|Sid32|Sid329	actin related protein 2/3 complex, subunit 1A	protein-coding	3.90593245425341	1.87492643592746	2.87722062798821	3.47797647035657	4.18828803233657	5.02501164381109	4.98045324275534	4.84771936014293	2.06570872281406	8.63594446154595e-05	0.00277537665132933
Merged-chr10-75949505-2	chr10	75949405	75949605	+	557.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001358532, exon 2 of 2)	3' UTR (NM_001358532, exon 2 of 2)	1205.0	NM_001358532	22364.0	Mm.333851	NM_009514	ENSMUSG00000000903	Vpreb3	8HS-20|AI528709|Vpreb-3	pre-B lymphocyte gene 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4170744-2	chr19	4170644	4170844	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134148, intron 7 of 9)	intron (NM_134148, intron 7 of 9)	4735.0	NM_134148	107239.0	Mm.482310	NM_134148	ENSMUSG00000075289	Carns1	AI790298|Atpgd1|mKIAA1394	carnosine synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-75781095-2	chr7	75780995	75781195	+	816.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR19|LTR|ERVK	-67243.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-98106923-2	chr16	98106823	98107023	+	677.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	-24484.0	NR_015491	320586.0	Mm.442230	NR_015491		A630089N07Rik	-	RIKEN cDNA A630089N07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64070308-2	chr5	64070208	64070408	+	824.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22631.0	NM_025700	66681.0	Mm.2325	NM_025700	ENSMUSG00000029171	Pgm1	3230402E02Rik|Pgm-1|Pgm2	phosphoglucomutase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44637869-3	chr9	44637774	44637974	+	702.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_181324, exon 14 of 14)	3' UTR (NM_181324, exon 14 of 14)	32982.0	NM_181324	13209.0	Mm.267061	NM_007841	ENSMUSG00000032097	Ddx6	1110001P04Rik|C430015D01Rik|E230023J21Rik|HLR2|mRCK/P54|p54|rck	DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	protein-coding	0.325996183028251	0.374518749949833	0.359176836532241	1.87578674880309	0.329181487746938	0.377909580736261	1.59478045955551	0.78472538536272	-0.222168698225254	0.946038666269385	0.998431161219273
Merged-chr7-30279283-3	chr7	30279222	30279422	+	930.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_144498)	promoter-TSS (NR_144498)	-772.0	NR_144498	108167416.0	Mm.471845	NR_144498		LOC108167416	-	uncharacterized LOC108167416	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-27590963-2	chr15	27590863	27591063	+	552.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_020332, exon 10 of 12)	exon (NM_020332, exon 10 of 12)	19469.0	NR_106065	102466808.0		NR_106065	ENSMUSG00000098416	Mir7117	Gm27729|mmu-mir-7117	microRNA 7117	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123523525-2	chr5	123523425	123523625	+	684.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_106105)	promoter-TSS (NR_106105)	639.0	NM_023232	66593.0	Mm.46716	NM_023232	ENSMUSG00000029433	Diablo	0610041G12Rik|1700006L01Rik|AU040403|Smac	diablo, IAP-binding mitochondrial protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-98186123-3	chr5	98186031	98186231	+	733.333313	f0_balb.idr|f1_balb.idr	promoter-TSS (NR_153823)	promoter-TSS (NR_153823)	-147.0	NR_153823	102637492.0	Mm.399020	NR_153823		A730035I17Rik	Gm34285	RIKEN cDNA A730035I17 gene	ncRNA	-0.165546038377061	-0.510329527161297	-0.513710255830805	-0.516307815938463	-0.51996239501524	-0.321945970520333	-0.512965961832486	-0.00304898327282316	1.04260624189998	0.6945242421436	1
Merged-chr11-101665524-4	chr11	101665420	101665620	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025404)	promoter-TSS (NM_025404)	-21.0	NM_025404	80981.0	Mm.266840	NM_025404	ENSMUSG00000034936	Arl4d	1110036H21Rik|ARL6|AW456149|Arf4l|Arfl4|Arl5	ADP-ribosylation factor-like 4D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119429406-1	chr11	119429306	119429506	+	682.0	f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	38934.0	NR_035453	100316690.0		NR_035453	ENSMUSG00000088015	Mir1932	mir-1932|mmu-mir-1932	microRNA 1932	ncRNA	1.14600871915818	1.43962719393178	1.14287271499155	1.50937960293126	0.612559483132526	0.867410053315403	0.636074332185478	0.626462655380136	-3.94424477365895	0.0133961373550073	0.134237351880883
Merged-chr9-100455251-3	chr9	100455108	100455308	+	717.8555299999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31265.0	NM_001033543	213208.0	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	1.8820359383292	2.65847509153659	3.86576299718987	2.488498816394	2.97277467642403	3.24606435842678	2.26691623915647	3.1243928865109	-0.000692676793633559	0.999278444547136	0.999667268844625
Merged-chr9-103225763-3	chr9	103225713	103225913	+	730.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133977, intron 4 of 16)	intron (NM_133977, intron 4 of 16)	4473.0	NM_133977	22041.0	Mm.37214	NM_133977	ENSMUSG00000032554	Trf	AI266983|Cd176|HP|Tf|Tfn|hpx	transferrin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-95834940-3	chr11	95834830	95835030	+	993.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025659, intron 3 of 7)	intron (NM_025659, intron 3 of 7)	-7365.0	NM_023121	14710.0	Mm.46299	NM_023121	ENSMUSG00000038811	Gngt2	AV096488	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-93941877-4	chr2	93941787	93941987	+	998.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15213.0	NM_001145034	620695.0	Mm.482106	NM_001145034	ENSMUSG00000087006	Gm13889	Ag2	predicted gene 13889	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-66308308-2	chr7	66308208	66308408	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146191, intron 7 of 33)	intron (NM_146191, intron 7 of 33)	73416.0	NR_106024	102465640.0		NR_106024	ENSMUSG00000098353	Mir7057	Gm27550|mmu-mir-7057	microRNA 7057	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-37434163-2	chr19	37434063	37434263	+	791.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008245)	promoter-TSS (NM_008245)	-678.0	NM_008245	15242.0	Mm.33896	NM_008245	ENSMUSG00000024986	Hhex	Hex|Hex1|Hhex-rs2|Prh|Prhx	hematopoietically expressed homeobox	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116857357-2	chr11	116857125	116857325	+	701.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178620, intron 2 of 12)	intron (NM_178620, intron 2 of 12)	3225.0	NM_001361586	69900.0	Mm.348004	NM_178620	ENSMUSG00000020818	Mfsd11	2600014M03Rik	major facilitator superfamily domain containing 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-20176228-3	chr11	20176118	20176318	+	859.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25194.0	NM_008996	19324.0	Mm.271944	NM_008996	ENSMUSG00000020149	Rab1a	Gtbp|Rab-1|Rab1|Ypt1|mKIAA3012	RAB1A, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135267145-4	chr4	135267043	135267243	+	983.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013885, intron 1 of 5)	intron (NM_013885, intron 1 of 5)	5617.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-36952396-7	chr8	36952267	36952467	+	911.214294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001194940)	promoter-TSS (NM_001194940)	75.0	NM_001194940	50768.0	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-79029141-4	chr12	79029043	79029243	+	915.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181073)	promoter-TSS (NM_181073)	-20.0	NM_181073	211945.0	Mm.478321	NM_181073	ENSMUSG00000060716	Plekhh1	AV308913|C77772|D630024D12Rik|mKIAA1200	pleckstrin homology domain containing, family H (with MyTH4 domain) member 1	protein-coding	-1.3681463318974	-1.33624156493372	-1.34650167276047	-0.80669348975676	-1.36769697821496	-1.33401815676661	-1.34417900924365	-1.3534210303531	-2.3580830592467	0.49586638340111	1
Merged-chr7-16946541-2	chr7	16946441	16946641	+	594.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_001099636, exon 1 of 1)	exon (NM_001099636, exon 1 of 1)	1859.0	NM_001099636	434128.0	Mm.483018	NM_001099636	ENSMUSG00000070802	Pnmal2	EG434128	PNMA-like 2	protein-coding	-0.0608342487086997	0.580147123082122	-0.0494751737649712	0.114667754857515	-0.0597777515380053	0.591420826816499	-0.0482570963461476	0.117660279517934	0.037523373212176	0.986029083769615	1
Merged-chr10-93376945-1	chr10	93376845	93377045	+	812.0	f0_balb.idr	Intergenic	Intergenic	40734.0	NR_038014	432488.0	Mm.32833	NR_038014		Gm17745	Gm3546	predicted gene, 17745	ncRNA	0.878832298626454	0.579657642495465	0.566103032895206	0.555432609163026	1.72373815319565	1.19090368390036	0.569118625941557	1.61924600134307	3.46298532946684	0.0408451124055543	0.288475510568248
Merged-chr9-35046422-2	chr9	35046322	35046522	+	562.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_009178)	TTS (NM_009178)	-70306.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-100305471-2	chr15	100305371	100305571	+	608.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027334, intron 1 of 1)	intron (NM_027334, intron 1 of 1)	654.0	NM_027334	70152.0	Mm.488086	NM_027334	ENSMUSG00000054619	Mettl7a1	2210414H16Rik|3300001H21Rik|Aam-B|Mettl7a|UbiE1	methyltransferase like 7A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-107825916-4	chr13	107825832	107826032	+	842.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 2 of 14)	intron (NM_145456, intron 2 of 14)	64132.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	3.51515129492829	3.34644451710674	2.11709957581578	3.20996681104176	2.11064610372427	3.03024819076436	1.69590392286167	1.35925362898141	-1.75761425074078	0.0393065506269105	0.282027223411168
Merged-chr5-105507773-4	chr5	105507639	105507839	+	921.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-11732.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	2.22219740681907	2.23369486832833	1.59585654420729	1.29942236201534	2.9988886193796	3.09202279853742	2.31340065322966	2.36019004403882	1.87909856690355	0.035836871734059	0.268173048065639
Merged-chr12-56030726-1	chr12	56030626	56030826	+	576.5	f0_balb.idr	Intergenic	Intergenic	194360.0	NR_155205	52592.0	Mm.24761	NM_027867	ENSMUSG00000012076	Brms1l	0710008O11Rik|AI159718|BRMS1|D12Ertd407e	breast cancer metastasis-suppressor 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-32163446-3	chr18	32163352	32163552	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_011946, exon 1 of 17)	5' UTR (NM_011946, exon 1 of 17)	363.0	NM_011946	26405.0	Mm.211762	NM_011946	ENSMUSG00000024383	Map3k2	9630061B06Rik|AI585793|Mekk2|Mekk2b	mitogen-activated protein kinase kinase kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69396954-6	chr11	69397009	69397209	+	838.633301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_030083)	TTS (NM_030083)	1125.0	NM_025915	67020.0	Mm.390406	NM_025915	ENSMUSG00000045377	Tmem88	2600017H02Rik	transmembrane protein 88	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-119983202-4	chr9	119983109	119983309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357560)	promoter-TSS (NM_001357560)	-186.0	NM_001357560	215418.0	Mm.491094	NM_153287	ENSMUSG00000032515	Csrnp1	4931429D10Rik|Axud1|CSRNP-1|URAX1|taip-3	cysteine-serine-rich nuclear protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46374520-2	chr19	46374420	46374620	+	949.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_029186, exon 9 of 9)	exon (NM_029186, exon 9 of 9)	17640.0	NM_029186	75146.0	Mm.159290	NM_029186	ENSMUSG00000025227	Mfsd13a	4930449A08Rik|4930538D17Rik|Tmem180	major facilitator superfamily domain containing 13a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83068328-2	chr6	83068228	83068428	+	579.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_009392)	TTS (NM_009392)	1897.0	NM_009392	21909.0	Mm.37	NM_009392	ENSMUSG00000068327	Tlx2	Enx|Hox11L.1|Hox11l1|NCX|Ncx1|Tlx1l1|Tlx1l2	T cell leukemia, homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-150589835-2	chr5	150589735	150589935	+	870.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133898, intron 1 of 4)	RSINE1|SINE|B4	4690.0	NM_133898	100637.0	Mm.279932	NM_133898	ENSMUSG00000041132	N4bp2l1	2410024N18Rik|AI428195|B230342M21Rik	NEDD4 binding protein 2-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-70640404-2	chr18	70640304	70640504	+	949.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	72112.0	NM_010773	17191.0	Mm.322	NM_010773	ENSMUSG00000024513	Mbd2	MBD2a	methyl-CpG binding domain protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-30125735-2	chr14	30125635	30125835	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083616, intron 11 of 46)	intron (NM_001083616, intron 11 of 46)	103102.0	NM_175343	218865.0	Mm.259916	NM_172264	ENSMUSG00000015970	Chdh	AU041472|D630034H06Rik	choline dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-142077176-1	chr4	142077076	142077276	+	641.5	f0_balb.idr	intron (NM_145402, intron 1 of 2)	ID_B1|SINE|B4	-7122.0	NR_027137	100038693.0	Mm.402714	NR_027137	ENSMUSG00000073728	Tmem51os1	Gm10565|Tmem51as1	Tmem51 opposite strand 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-179760795-4	chr1	179760708	179760908	+	663.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026375, intron 29 of 35)	B1_Mus1|SINE|Alu	43207.0	NM_026375	226747.0	Mm.128165	NM_026375	ENSMUSG00000026491	Ahctf1	6230412P20Rik|AV011447|Elys	AT hook containing transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-91278695-4	chr5	91278608	91278808	+	995.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040428, intron 3 of 5)	intron (NR_040428, intron 3 of 5)	4368.0	NR_040428	100503265.0	Mm.125059	NR_040428	ENSMUSG00000107198	Gm19619	-	predicted gene, 19619	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-64085559-1	chr15	64085459	64085659	+	808.333313	f1_c57bl6.idr	Intergenic	Intergenic	-25111.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0.41229376228052	0.654031456797213	1.15583915140415	0.269810317200401	0.768517089209996	0.284650217565197	0.277202963053545	0.446873114448277	-1.24651819372673	0.490503330520266	1
Merged-chr14-31406303-4	chr14	31406184	31406384	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347585, intron 2 of 7)	intron (NM_001347585, intron 2 of 7)	11393.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-102052315-3	chr13	102052299	102052499	+	765.700012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-284182.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-21841074-4	chr3	21840978	21841178	+	996.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-235574.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-74388553-2	chr1	74388453	74388653	+	733.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-3056.0	NM_153088	227292.0	Mm.165042	NM_153088	ENSMUSG00000026176	Ctdsp1	GIP|NLIIF|Nif3|SCP1	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26213734-1	chr17	26213634	26213834	+	790.5	f1_c57bl6.idr	intron (NM_001357894, intron 12 of 12)	intron (NM_001357894, intron 12 of 12)	10793.0	NM_001081069	50782.0	Mm.109840	NM_001081069	ENSMUSG00000024186	Rgs11	C78048	regulator of G-protein signaling 11	protein-coding	0.905777609189381	0.7688873225539	0.753606829683274	1.50968549160999	1.32502767810686	0.772284238206088	1.87117815800991	1.71544746663112	1.73082729774806	0.228596009530919	0.721861600842291
Merged-chr17-34345076-2	chr17	34344923	34345123	+	738.833374	f0_balb.idr|f1_balb.idr	promoter-TSS (NM_010381)	promoter-TSS (NM_010381)	-378.0	NM_010381	100504404.0	Mm.15680	NM_010381		H2-Ea-ps	AI323765|E-alpha-f|H-2Ea|H2-Ea|I-Ealpha|Ia-3|Ia3|MHC-H2-Ea	histocompatibility 2, class II antigen E alpha, pseudogene	protein-coding	2.37587352865232	2.14905827449379	2.44639572346227	2.51998440714514	2.64467815603973	4.24137649206591	3.28521690843426	3.71340737647681	2.09466663261301	0.0023305587414802	0.0373864752628688
Merged-chr17-34631019-4	chr17	34630905	34631105	+	682.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_030890, exon 2 of 4)	exon (NM_030890, exon 2 of 4)	1319.0	NM_030890	260297.0	Mm.390965	NM_030890	ENSMUSG00000015476	Prrt1	Bat-4|Bat4|D17H6S54E|DSPD1|G5b|NG5|ORF31|SynDIG4	proline-rich transmembrane protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-73034348-2	chr8	73034248	73034448	+	618.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001317391, intron 7 of 15)	intron (NM_001317391, intron 7 of 15)	17836.0	NR_039551	100628574.0		NR_039551	ENSMUSG00000093140	Mir28b	mmu-mir-28b	microRNA 28b	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-36636940-4	chr16	36636847	36637047	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019388, intron 1 of 7)	MTD|LTR|ERVL-MaLR	29130.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-119846237-2	chr4	119846137	119846337	+	805.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_010657, intron 1 of 8)	intron (NM_010657, intron 1 of 8)	31559.0	NM_010657	16656.0	Mm.302758	NM_010657	ENSMUSG00000028634	Hivep3	2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3	human immunodeficiency virus type I enhancer binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-106153695-2	chr8	106153595	106153795	+	599.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357319, intron 1 of 5)	intron (NM_001357319, intron 1 of 5)	3341.0	NM_001357319	192654.0	Mm.284770	NM_133792	ENSMUSG00000031903	Pla2g15	ACS|C87498|LLPL|Lpla2|Lypla3	phospholipase A2, group XV	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-84688115-4	chr7	84687994	84688194	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360577, intron 1 of 7)	intron (NM_001360577, intron 1 of 7)	-1546.0	NR_038175	72495.0	Mm.382914	NR_038175	ENSMUSG00000085236	2610206C17Rik	-	RIKEN cDNA 2610206C17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-7850953-3	chr14	7850855	7851055	+	681.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081427, intron 1 of 45)	RMER5|LTR|ERV1	32998.0	NM_134080	286940.0	Mm.489652	NM_134080	ENSMUSG00000025278	Flnb	AL024016|Fln-b	filamin, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-62880380-2	chr14	62880292	62880492	+	674.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175546, intron 1 of 11)	intron (NM_175546, intron 1 of 11)	14850.0	NR_105860	102465311.0		NR_105860	ENSMUSG00000098858	Mir6541	Gm27311|mmu-mir-6541	microRNA 6541	ncRNA	0.566158184988225	1.58455052079558	0.595388329686468	1.63465684593478	0.915615448624823	0.612191188749446	0.59844624415382	1.46686427197382	-0.956456034042197	0.557530127492433	0.960321604678676
Merged-chr11-116144568-2	chr11	116144468	116144668	+	835.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172571, intron 29 of 30)	intron (NM_172571, intron 29 of 30)	-5700.0	NM_024177	60441.0	Mm.29974	NM_024177	ENSMUSG00000020775	Mrpl38	1110036N21Rik|4733401F03Rik|MRP-L3|R75240|Rpml3	mitochondrial ribosomal protein L38	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-91737554-2	chr6	91737454	91737654	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009320, intron 6 of 14)	intron (NM_009320, intron 6 of 14)	53487.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-86215436-4	chr1	86215332	86215532	+	769.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027456, intron 19 of 20)	MTD|LTR|ERVL-MaLR	60652.0	NM_001310702	78795.0	Mm.379264	NM_027456	ENSMUSG00000062590	Armc9	3830422A13Rik|4831423D23Rik|4930438O05Rik|5730415N24Rik	armadillo repeat containing 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-23823066-2	chr17	23822966	23823166	+	833.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_039586)	promoter-TSS (NR_039586)	-225.0	NR_039586	100628593.0		NR_039586	ENSMUSG00000092981	Mir5125	mmu-mir-5125|mu-mir-5125	microRNA 5125	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-92986917-3	chr13	92986806	92987006	+	850.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-86398.0	NR_036451	100502942.0	Mm.441946	NM_177623	ENSMUSG00000114382	Gm4814	C920025J10|EG218444	predicted gene 4814	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-118533185-8	chr7	118533101	118533301	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001304758, exon 1 of 7)	exon (NM_001304758, exon 1 of 7)	155.0	NM_001304758	12850.0	Mm.20634	NM_009940	ENSMUSG00000030652	Coq7	clk-1	demethyl-Q 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-90496448-1	chr6	90496348	90496548	+	723.0	f0_balb.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	33872.0	NM_023184	66277.0	Mm.38343	NM_023184	ENSMUSG00000030087	Klf15	1810013I09Rik|AV048136|AW494632|CKLF|KKLF	Kruppel-like factor 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-90212953-4	chr7	90212851	90213051	+	933.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52481.0	NM_029256	75338.0	Mm.487222	NM_029256	ENSMUSG00000030617	Ccdc83	4930549K11Rik|4930554C01Rik|4932423M01Rik	coiled-coil domain containing 83	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-61649081-2	chr18	61648981	61649181	+	542.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_029601)	TTS (NR_029601)	177.0	NR_029601	387161.0		NR_029601	ENSMUSG00000065445	Mir143	Mirn143|mir-143|mmu-mir-143	microRNA 143	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-58586773-2	chr1	58586673	58586873	+	779.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172513)	promoter-TSS (NM_172513)	376.0	NM_025597	66495.0	Mm.2033	NM_025597	ENSMUSG00000026032	Ndufb3	2700033I16Rik|CI-B12	NADH dehydrogenase (ubiquinone) 1 beta subcomplex 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135236878-4	chr4	135236774	135236974	+	972.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013885, intron 2 of 5)	intron (NM_013885, intron 2 of 5)	35886.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-81375306-4	chr8	81375186	81375386	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024617, intron 1 of 24)	intron (NM_001024617, intron 1 of 24)	32724.0	NM_001297593	234515.0	Mm.324468	NM_001024617	ENSMUSG00000037940	Inpp4b	E130107I17Rik	inositol polyphosphate-4-phosphatase, type II	protein-coding	5.01836565424462	5.38414319056896	5.99904891034002	4.78197423180072	4.96780218832036	3.63987888570261	4.67563463036736	4.43794564574811	-1.01257653765846	0.010043504274846	0.109480888209815
Merged-chr16-4476187-2	chr16	4476087	4476287	+	609.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001347162)	TTS (NM_001347162)	46888.0	NM_001347162	106393.0	Mm.35811	NM_175347	ENSMUSG00000022519	Srl	9830004M20Rik|AW108387|sar	sarcalumenin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-117560634-4	chr12	117560557	117560757	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175930, intron 3 of 27)	intron (NM_175930, intron 3 of 27)	44178.0	NM_175930	217944.0	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-102636862-4	chr7	102636764	102636964	+	819.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3384.0	NM_146325	258322.0	Mm.377435	NM_146325	ENSMUSG00000073971	Olfr554	MOR25-1	olfactory receptor 554	protein-coding	1.2819954005833	0.6282845689126	0.618511049265107	1.06459797293678	0.893227244446932	0.630476799318072	1.23278217312279	1.2877493093368	0.474849019747965	0.762040016565401	0.998431161219273
Merged-chr10-99108151-4	chr10	99108051	99108251	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015737)	promoter-TSS (NM_015737)	16.0	NM_015737	14426.0	Mm.314	NM_015737	ENSMUSG00000090035	Galnt4	AV011803	polypeptide N-acetylgalactosaminyltransferase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-3931684-1	chr11	3931584	3931784	+	743.0	f0_balb.idr	intron (NM_001130458, intron 1 of 9)	intron (NM_001130458, intron 1 of 9)	277.0	NM_001130459	21452.0	Mm.20948	NM_015749	ENSMUSG00000020432	Tcn2	AW208754|Tcn-2	transcobalamin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-37134326-2	chr14	37134226	37134426	+	910.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_078478, intron 1 of 8)	intron (NM_078478, intron 1 of 8)	813.0	NM_001199122	66092.0	Mm.182912	NM_078478	ENSMUSG00000041028	Ghitm	1010001P14Rik|C77840|MICS1|PTD010|Tmbim5	growth hormone inducible transmembrane protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-54576696-3	chr14	54576597	54576797	+	735.6190190000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010590, exon 1 of 8)	exon (NM_010590, exon 1 of 8)	964.0	NM_010590	16475.0	Mm.100253	NM_010590	ENSMUSG00000022178	Ajuba	Jub	ajuba LIM protein	protein-coding	2.30464056102852	1.38177518999938	2.92509564688471	2.20978187922109	1.85090041971894	2.7129796511478	2.52234507346961	1.94254623526999	-0.0418698255341355	0.963769988668897	0.998431161219273
Merged-chr3-108210554-4	chr3	108210444	108210644	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289545)	promoter-TSS (NM_001289545)	-17.0	NM_175183	72522.0	Mm.187326	NM_175183	ENSMUSG00000048997	Atxn7l2	2610528J18Rik	ataxin 7-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-130080107-2	chr5	130080007	130080207	+	846.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001130476, intron 1 of 5)	B1F1|SINE|Alu	737.0	NM_001130476	22021.0	Mm.332720	NM_013837	ENSMUSG00000034118	Tpst1	R75054|Tango13a	protein-tyrosine sulfotransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-34233107-4	chr5	34233012	34233212	+	719.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001015039, intron 5 of 12)	intron (NM_001015039, intron 5 of 12)	-45402.0	NM_010753	17122.0	Mm.259260	NM_010753	ENSMUSG00000037235	Mxd4	2810410A03Rik|Mad4|bHLHc12	Max dimerization protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-100227226-4	chr15	100227142	100227342	+	897.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007497)	promoter-TSS (NM_007497)	-617.0	NM_007497	11908.0	Mm.676	NM_007497	ENSMUSG00000023027	Atf1	-	activating transcription factor 1	protein-coding	1.98709950756052	1.07880895506534	1.05367690108488	1.03359115589456	1.90893570566537	1.90614282310107	2.45649579572326	2.29526679918482	2.28756676210963	0.0535515701090188	0.338877499033759
Merged-chr12-78227500-6	chr12	78227446	78227646	+	871.388916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172952, intron 1 of 23)	intron (NM_172952, intron 1 of 23)	891.0	NM_145965	268566.0	Mm.341742	NM_145965	ENSMUSG00000047454	Gphn	5730552E08Rik|AI662856|BC027112|C230040D23|GPH|GPHRYN|geph	gephyrin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-88866645-4	chr18	88866548	88866748	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	27559.0	NM_018821	54607.0	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53246523-2	chr4	53246423	53246623	+	551.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_040665, intron 1 of 2)	intron (NR_040665, intron 1 of 2)	327.0	NR_040665	78180.0	Mm.243847	NR_040665	ENSMUSG00000086947	4930522O17Rik	-	RIKEN cDNA 4930522O17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-126541038-4	chr4	126540920	126541120	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7562.0	NM_153177	76850.0	Mm.86705	NM_153177	ENSMUSG00000042500	Ago4	5730550L01Rik|AI481660|Eif2c4	argonaute RISC catalytic subunit 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72093352-3	chr6	72093273	72093473	+	914.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4235.0	NM_001035228	20454.0	Mm.38248	NM_011375	ENSMUSG00000056091	St3gal5	3S-T|Siat9|[a]2	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-10384418-3	chr16	10384321	10384521	+	851.125	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001099275, intron 3 of 5)	intron (NM_001099275, intron 3 of 5)	11027.0	NM_001099275	70426.0	Mm.142181	NM_001099275	ENSMUSG00000039179	Tekt5	3300001K11Rik	tektin 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-49607321-4	chr4	49607224	49607424	+	871.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-9448.0	NM_025944	67063.0	Mm.454013	NM_025944	ENSMUSG00000039611	Tmem246	2810432L12Rik|9330170P15Rik|AI835809	transmembrane protein 246	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-107583049-4	chr1	107582942	107583142	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	-6964.0	NM_011459	20725.0	Mm.83909	NM_011459	ENSMUSG00000026315	Serpinb8	CAP-2|CAP2|NK10|Spi8|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-73613305-4	chr12	73613209	73613409	+	965.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001313977, intron 2 of 14)	intron (NM_001313977, intron 2 of 14)	28513.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	2.02874454166698	2.89766540936803	1.01663051678601	0.992073465340472	1.83088937690758	1.05372977622663	2.5265532993479	1.64858993149557	-0.300603778699169	0.805891570316544	0.998431161219273
Merged-chr7-45525043-4	chr7	45524914	45525114	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008654, exon 2 of 3)	exon (NM_008654, exon 2 of 3)	1254.0	NM_008654	17872.0	Mm.4048	NM_008654	ENSMUSG00000040435	Ppp1r15a	9630030H21|Gadd34|Myd116	protein phosphatase 1, regulatory (inhibitor) subunit 15A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139776559-2	chr5	139776459	139776659	+	702.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026748)	promoter-TSS (NM_026748)	-881.0	NM_026748	68510.0	Mm.292942	NM_026748	ENSMUSG00000029547	Ints1	1110015K06Rik	integrator complex subunit 1	protein-coding	0.620884462587665	0.879515937635058	0.645959840922068	1.53959506838437	1.53122875455171	1.07052737178766	0.648605852816593	1.2551098973461	0.722706369447093	0.641597978243763	0.982599433509505
Merged-chr3-127792362-4	chr3	127792259	127792459	+	943.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356430, intron 2 of 2)	intron (NM_001356430, intron 2 of 2)	1702.0	NM_001356430	211550.0	Mm.31852	NM_145133	ENSMUSG00000046688	Tifa	T2bp	TRAF-interacting protein with forkhead-associated domain	protein-coding	2.64076033285766	2.39169658284053	3.33080254803782	3.86014184096268	3.02553652660563	3.10532648884318	2.13384957585732	3.00507271586762	-0.557819308821935	0.430085479012953	0.904095509792853
Merged-chr16-91450332-2	chr16	91450232	91450432	+	604.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-14772.0	NR_077219	100503120.0	Mm.387130	NR_077219	ENSMUSG00000084866	A930006K02Rik	-	RIKEN cDNA A930006K02 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-61590087-2	chr8	61589987	61590187	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001293772, intron 10 of 21)	intron (NM_001293772, intron 10 of 21)	1082.0	NM_001293774	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-113725776-4	chr9	113725682	113725882	+	978.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15691.0	NM_001286599	76499.0	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-19491670-2	chr10	19491570	19491770	+	647.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_152784, intron 2 of 3)	intron (NR_152784, intron 2 of 3)	-2973.0	NR_152785	102635880.0	Mm.331974	NR_152784	ENSMUSG00000110902	Gm33104	-	predicted gene, 33104	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-86658725-2	chr4	86658625	86658825	+	950.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007408, intron 6 of 7)	intron (NM_007408, intron 6 of 7)	11334.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-156373349-2	chr2	156373223	156373423	+	633.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027585, intron 11 of 12)	intron (NM_027585, intron 11 of 12)	19656.0	NR_024329	347740.0	Mm.324242	NR_024329	ENSMUSG00000102869	2900097C17Rik	1810005K14Rik|4930563C06Rik	RIKEN cDNA 2900097C17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-55348775-2	chr4	55348675	55348875	+	741.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1267.0	NM_009011	19359.0	Mm.196846	NM_009011	ENSMUSG00000028426	Rad23b	0610007D13Rik|AV001138|HR23B|mHR23B|p58	RAD23 homolog B, nucleotide excision repair protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-78726032-1	chr1	78725932	78726132	+	727.0	f1_balb.idr	Intergenic	Intergenic	67592.0	NM_001136226	195434.0	Mm.276016	NM_001001981	ENSMUSG00000079470	Utp14b	4932411L21Rik|jsd	UTP14B small subunit processome component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-34842920-7	chr1	34842777	34842977	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001160235, exon 1 of 8)	5' UTR (NM_001160235, exon 1 of 8)	173.0	NM_174997	214469.0	Mm.120151	NM_174997	ENSMUSG00000037503	Fam168b	Mani|mKIAA4042	family with sequence similarity 168, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-21318311-3	chr12	21318148	21318348	+	753.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026347, intron 3 of 5)	intron (NM_026347, intron 3 of 5)	1856.0	NM_026347	67732.0	Mm.335830	NM_026347	ENSMUSG00000062054	Iah1	1500019E20Rik|4833421E05Rik	isoamyl acetate-hydrolyzing esterase 1 homolog	protein-coding	2.17772605008371	1.92990905413293	1.69219550107307	2.55925680027935	2.76248885019164	1.2743662509001	2.2811211414979	1.45800880434641	-0.0544572843501369	0.957398820447343	0.998431161219273
Merged-chr18-30088625-4	chr18	30088517	30088717	+	986.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-184248.0	NM_181414	225326.0	Mm.194127	NM_181414	ENSMUSG00000033628	Pik3c3	5330434F23Rik|Vps34	phosphatidylinositol 3-kinase catalytic subunit type 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126827107-4	chr8	126826998	126827198	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21922.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-86449763-3	chr9	86449653	86449853	+	890.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027394, intron 2 of 9)	intron (NM_027394, intron 2 of 9)	15163.0	NM_027394	70348.0	Mm.53469	NM_027394	ENSMUSG00000032415	Ube2cbp	2610018I03Rik|Ube3d	ubiquitin-conjugating enzyme E2C binding protein	protein-coding	0.345747764990033	-0.267259308341594	-0.271542656455037	-0.274841509718504	-0.136646035427995	-0.266292584852627	-0.270598674077095	0.253347037702922	-0.0379658866470945	0.987656609743276	1
Merged-chr11-100583075-3	chr11	100582977	100583177	+	842.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_019795, exon 14 of 14)	3' UTR (NM_019795, exon 14 of 14)	7186.0	NM_001146318	12799.0	Mm.15711	NM_009923	ENSMUSG00000006782	Cnp	CNPase|Cnp-1|Cnp1	2',3'-cyclic nucleotide 3' phosphodiesterase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167370342-2	chr2	167370242	167370442	+	627.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-21164.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124856690-2	chr6	124856590	124856790	+	919.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013534, intron 1 of 14)	intron (NM_013534, intron 1 of 14)	997.0	NM_013534	14789.0	Mm.35708	NM_013534	ENSMUSG00000023191	P3h3	BC016431|Grcb|Leprel2	prolyl 3-hydroxylase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-40735597-2	chr19	40735530	40735730	+	871.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001304721, intron 8 of 9)	L1_Mur3|LINE|L1	75860.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	1.23230120455078	0.631001482676975	1.42550483216638	0.773098876354375	1.24445337593081	0.632672565385721	0.625240591400323	0.776269881209914	-1.10637463754543	0.494395334627598	0.935679785535167
Merged-chr7-137421613-3	chr7	137421567	137421767	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10911.0	NM_029886	77252.0	Mm.29184	NM_029886	ENSMUSG00000040139	9430038I01Rik	-	RIKEN cDNA 9430038I01 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80266577-2	chr10	80266477	80266677	+	688.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133188, intron 1 of 11)	intron (NM_133188, intron 1 of 11)	1586.0	NM_133188	70248.0	Mm.148693	NM_133188	ENSMUSG00000069565	Dazap1	2410042M16Rik|mPrrp	DAZ associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-94389189-4	chr2	94389080	94389280	+	999.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183106, intron 1 of 24)	intron (NM_183106, intron 1 of 24)	17509.0	NM_183106	74569.0	Mm.248504	NM_183106	ENSMUSG00000027194	Ttc17	9130020K17Rik|D2Bwg1005e	tetratricopeptide repeat domain 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131345596-1	chr1	131345496	131345696	+	787.25	f0_balb.idr	intron (NM_001081011, intron 9 of 22)	intron (NM_001081011, intron 9 of 22)	-66033.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-161077383-3	chr1	161077256	161077456	+	986.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131030, intron 2 of 4)	ORR1A3|LTR|ERVL-MaLR	6589.0	NR_131029	70454.0	Mm.248212	NM_027429	ENSMUSG00000026708	Cenpl	2610300B10Rik|AW121806|AW550697|CENP-L	centromere protein L	protein-coding	2.05797697738563	4.33051010696468	3.51038088123724	3.60520365981568	2.07876481555718	2.87164681539375	1.83011456058587	3.27906798911384	-1.53445676933624	0.0419061064887584	0.293000854109629
Merged-chr4-134526402-4	chr4	134526294	134526494	+	851.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_029759, exon 7 of 7)	3' UTR (NM_029759, exon 7 of 7)	8702.0	NM_001355188	76824.0	Mm.30153	NM_029759	ENSMUSG00000046671	Mtfr1l	2410166I05Rik|AI480750|Fam54b	mitochondrial fission regulator 1-like	protein-coding	2.54289377760439	3.47994023385977	1.78412253398223	3.56303341921023	2.04152225837853	2.47818116169994	2.78909496747236	2.99038237345519	-0.747184616111344	0.340781979565858	0.841758617382206
Merged-chr1-64052567-3	chr1	64052459	64052659	+	967.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033563, intron 2 of 3)	intron (NM_033563, intron 2 of 3)	-10058.0	NR_105864	102466760.0		NR_105864	ENSMUSG00000098487	Mir6899	Gm27384|mmu-mir-6899	microRNA 6899	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-60667620-2	chr13	60667520	60667720	+	719.357178	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	65409.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-47939981-4	chr8	47939907	47940107	+	834.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133791, intron 1 of 22)	intron (NM_133791, intron 1 of 22)	50544.0	NM_133791	52357.0	Mm.235074	NM_133791	ENSMUSG00000031563	Wwc2	5330431C14Rik|AU022508|C85457|D8Ertd594e	WW, C2 and coiled-coil domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122882131-3	chr8	122882020	122882220	+	743.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33746.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	1.30488092966611	2.05044343467655	1.21713160487301	0.954725445873759	1.81738479318085	2.52535620093735	1.22589433866334	1.54526263998063	1.22392844874376	0.294805864113273	0.798191705447
Merged-chr2-167766568-2	chr2	167766468	167766668	+	851.4166869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	75391.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-45578677-2	chr19	45578577	45578777	+	607.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001356947)	TTS (NM_001356947)	18092.0	NM_172639	226162.0	Mm.21978	NM_172639	ENSMUSG00000041035	Dpcd	Ndac	deleted in primary ciliary dyskinesia	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-80935812-2	chr13	80935712	80935912	+	647.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4591.0	NR_103550	71416.0	Mm.415500	NR_103550		5430425K12Rik	-	RIKEN cDNA 5430425K12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-99323850-4	chr13	99323763	99323963	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026873, intron 8 of 9)	intron (NM_026873, intron 8 of 9)	20815.0	NM_026873	68927.0	Mm.276502	NM_026873	ENSMUSG00000021650	Ptcd2	1190005P08Rik	pentatricopeptide repeat domain 2	protein-coding	3.46175854637394	3.81241921125295	4.98042546136345	4.56996512441716	4.57788664639896	4.01182800491639	4.22368099344966	4.21359575128274	-0.07881368557758	0.864887286795404	0.998431161219273
Merged-chr5-8058267-3	chr5	8058173	8058373	+	861.861084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080974, intron 2 of 7)	intron (NM_001080974, intron 2 of 7)	1731.0	NM_001080974	109552.0	Mm.96211	NM_025618	ENSMUSG00000003161	Sri	2210417O06Rik|2900070H08Rik|Sor	sorcin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-34792775-4	chr13	34792681	34792881	+	951.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53139.0	NM_138746	108161.0	Mm.41991	NM_138746	ENSMUSG00000038246	Fam50b	D0H6S2654E|X5L|XAP-5-like	family with sequence similarity 50, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70655274-1	chr8	70655174	70655374	+	792.0	f1_c57bl6.idr	intron (NM_023217, intron 2 of 4)	intron (NM_023217, intron 2 of 4)	4464.0	NM_023217	66522.0	Mm.154906	NM_023217	ENSMUSG00000056204	Pgpep1	2810003H13Rik|Gm19458|PAP-I|PGP|PGP-I|PGPI|Pcp	pyroglutamyl-peptidase I	protein-coding	0.600603035799551	1.02681607370978	0.451435847871522	1.1683640504732	0.431118253067972	1.50090574109744	0.453803167336196	0.641354081336111	0.0369360234994176	0.982317037930381	0.998431161219273
Merged-chr2-44983007-4	chr2	44982908	44983108	+	871.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001355289)	TTS (NM_001355289)	40169.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-123667187-2	chr4	123667087	123667287	+	628.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_136925, intron 1 of 3)	intron (NR_136925, intron 1 of 3)	1306.0	NR_136925	102633214.0	Mm.399387	NR_136925		Gm12925	-	predicted gene 12925	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-48931932-4	chr17	48931833	48932033	+	864.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027452)	promoter-TSS (NM_027452)	-649.0	NM_027452	70530.0	Mm.133607	NM_027452	ENSMUSG00000040490	Lrfn2	5730420O05Rik|SALM1|mKIAA1246	leucine rich repeat and fibronectin type III domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-82036077-3	chr11	82035961	82036161	+	683.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011333, intron 1 of 2)	intron (NM_011333, intron 1 of 2)	484.0	NM_011333	20296.0	Mm.290320	NM_011333	ENSMUSG00000035385	Ccl2	AI323594|HC11|JE|MCAF|MCP-1|MCP1|SMC-CF|Scya2|Sigje	chemokine (C-C motif) ligand 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-96947321-2	chr7	96947221	96947421	+	549.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17B|LTR|ERVK	-4206.0	NM_153591	244141.0	Mm.274864	NM_153591	ENSMUSG00000018995	Nars2	AI875199	asparaginyl-tRNA synthetase 2 (mitochondrial)(putative)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-119541859-1	chr2	119541759	119541959	+	765.0	f1_balb.idr	intron (NM_172857, intron 2 of 12)	B1_Mur3|SINE|Alu	5768.0	NM_172857	241624.0	Mm.212773	NM_172857	ENSMUSG00000048647	Exd1	4932702D22Rik|Exdl1|mExd1	exonuclease 3'-5' domain containing 1	protein-coding	-1.7024385483431	-1.81249224917775	-1.82134771053534	-1.82862185015837	-1.70038292649591	-1.81057323376012	-1.81934302819017	-1.82731978264371	0.0376840119903864	0.991491645451152	1
Merged-chr15-82118898-4	chr15	82118811	82119011	+	863.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028897, intron 26 of 30)	RLTR22_Mur|LTR|ERVK	-9011.0	NM_172428	76457.0	Mm.440373	NM_172428	ENSMUSG00000068114	Ccdc134	2310042L06Rik|AW208859	coiled-coil domain containing 134	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-4876348-2	chr2	4876249	4876449	+	971.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-5215.0	NM_175400	109079.0	Mm.34329	NM_175400	ENSMUSG00000026662	Sephs1	1110046B24Rik|AA589574|AI505014|AW111620|SELD|SPS|SPS1	selenophosphate synthetase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-84352744-4	chr17	84352630	84352830	+	898.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183021, intron 26 of 37)	intron (NM_183021, intron 26 of 37)	113478.0	NM_183021	240174.0	Mm.246767	NM_177826	ENSMUSG00000024251	Thada	6530405K19|A930021O22|AU019899|BC052885|GITA	thyroid adenoma associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191069439-3	chr1	191069341	191069541	+	917.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198654, intron 2 of 5)	intron (NM_198654, intron 2 of 5)	6420.0	NM_198654	381318.0	Mm.32504	NM_198654	ENSMUSG00000062510	Nsl1	4833432M17Rik|AI451597|Gm105|Gm984	NSL1, MIS12 kinetochore complex component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53088673-2	chr4	53088573	53088773	+	805.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 11 of 49)	intron (NM_013454, intron 11 of 49)	71222.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-12148051-4	chr12	12147944	12148144	+	785.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-114095.0	NM_029758	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-73031322-3	chr17	73031240	73031440	+	933.944458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-76645.0	NM_001177968	225010.0	Mm.329194	NM_001081071	ENSMUSG00000054469	Lclat1	AI181996|Agpat8|Alcat1|Gm91|Lycat	lysocardiolipin acyltransferase 1	protein-coding	3.17734721975916	3.09147007310848	3.13435051793596	2.30435325615618	2.31754819163981	1.43406221179024	1.66840177639388	2.17732243228851	-2.1421487951012	0.0109913640046938	0.116260095687144
Merged-chr15-76942282-2	chr15	76942182	76942382	+	775.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5979.0	NM_054099	117171.0	Mm.322968	NM_054099	ENSMUSG00000063236	1110038F14Rik	-	RIKEN cDNA 1110038F14 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-54031024-2	chr8	54030924	54031124	+	661.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-46508.0	NM_009506	22341.0	Mm.1402	NM_009506	ENSMUSG00000031520	Vegfc	AW228853|VEGF-C	vascular endothelial growth factor C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-131837173-8	chr4	131837106	131837306	+	817.479187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083119, intron 1 of 30)	CpG	1072.0	NM_011214	19273.0	Mm.4860	NM_011214	ENSMUSG00000028909	Ptpru	Ftp-1|PCP-2|PTP|PTP-lambda|PTPlambda|Pcp2|Ptpf|Ptprl|R-PTP-U|R-PTP-psi|RPTPlambda	protein tyrosine phosphatase, receptor type, U	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-35704320-2	chr15	35704220	35704420	+	693.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177151, intron 33 of 61)	MTB|LTR|ERVL-MaLR	-43273.0	NR_030606	100124469.0		NR_030606	ENSMUSG00000077890	Mir875	Mirn875|mir-875|mmu-mir-875	microRNA 875	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4722327-4	chr16	4722245	4722445	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2989.0	NM_001290761	67824.0	Mm.28451	NM_026393	ENSMUSG00000063445	Nmral1	1110025F24Rik|AI256624	NmrA-like family domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-35036668-2	chr7	35036568	35036768	+	797.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008820, intron 12 of 14)	intron (NM_008820, intron 12 of 14)	19898.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-42134795-2	chr19	42134695	42134895	+	648.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-5802.0	NM_027106	69534.0	Mm.30060	NM_027106	ENSMUSG00000018821	Avpi1	2310008N12Rik|AA410041|VIT32|esu|mVIT32	arginine vasopressin-induced 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-86577654-2	chr6	86577554	86577754	+	549.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50253.0	NR_037961	72012.0	Mm.349174	NR_037960	ENSMUSG00000097048	1600020E01Rik	-	RIKEN cDNA 1600020E01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-108517787-4	chr6	108517700	108517900	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 57 of 61)	intron (NM_010585, intron 57 of 61)	28057.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-123112135-2	chr9	123112035	123112235	+	704.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026917, intron 1 of 6)	RLTR25B|LTR|ERVK	1070.0	NM_026917	69035.0	Mm.28300	NM_026917	ENSMUSG00000025786	Zdhhc3	1110020O22Rik|1810006O10Rik|2210017C02Rik|DHHC-3|GODZ|Gramp1|Zfp373	zinc finger, DHHC domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26468246-2	chr17	26468146	26468346	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40226.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-37333546-4	chr13	37333402	37333602	+	912.724976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11843.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-65019009-4	chr13	65018902	65019102	+	990.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14056.0	NM_001083890	238683.0	Mm.295543	NM_001083890	ENSMUSG00000074849	Spata31d1c	4932441B19Rik|Fam75d1c	spermatogenesis associated 31 subfamily D, member 1C	protein-coding	2.31634545306164	1.90008045662009	2.50793822189569	2.90373024213324	2.3351387025733	2.09213164217177	2.02660497845144	1.9684019387506	-0.827739583618218	0.329775710788055	0.831942889324137
Merged-chr1-131438351-1	chr1	131438251	131438451	+	575.0	f0_balb.idr	intron (NM_001081011, intron 2 of 22)	intron (NM_001081011, intron 2 of 22)	89010.0	NM_001081011	14270.0	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85368318-2	chr12	85368218	85368418	+	688.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026775, intron 1 of 4)	intron (NM_026775, intron 1 of 4)	6399.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-76151151-3	chr18	76151013	76151213	+	867.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19439.0	NR_105776	102465184.0		NR_105776	ENSMUSG00000098276	Mir6358	Gm27830|mmu-mir-6358	microRNA 6358	ncRNA	1.84254393595916	1.45163439444959	1.24126089568344	1.70108869798201	0.802487826636182	1.84772430793993	0.838248847923687	0.823763499273976	-1.41675056394761	0.308324319772947	0.809295017856989
Merged-chr5-20967997-4	chr5	20967876	20968076	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16154.0	NM_001080977	242860.0	Mm.254286	NM_001080977	ENSMUSG00000039968	Rsbn1l	8430412F05Rik|AI447441|C330002G24Rik	round spermatid basic protein 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-68582608-1	chr13	68582508	68582708	+	1000.0	f1_balb.idr	promoter-TSS (NR_131892)	promoter-TSS (NR_131892)	398.0	NR_138478	69577.0	Mm.23670	NM_027123	ENSMUSG00000021532	Fastkd3	2310010B21Rik|AW048587	FAST kinase domains 3	protein-coding	0.51318852954414	0.587646798939404	0.564492314619059	0.545847341795455	1.72302073264425	2.62015175491061	0.855274746249178	1.37577761385991	5.41206245652996	0.000351704909290745	0.00833851805499521
Merged-chr10-61694993-1	chr10	61694893	61695093	+	568.5	f0_c57.idr	promoter-TSS (NM_001272090)	promoter-TSS (NM_001272090)	-521.0	NM_001272090	71767.0	Mm.71514	NM_027912	ENSMUSG00000020087	Tysnd1	1300019N10Rik	trypsin domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-86898928-4	chr4	86898837	86899037	+	781.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290541, intron 3 of 4)	intron (NM_001290541, intron 3 of 4)	24523.0	NM_139306	230379.0	Mm.45019	NM_139306	ENSMUSG00000038007	Acer2	2410116I05Rik|Asah3l|CRG-L1|maCER2	alkaline ceramidase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117782311-4	chr11	117782221	117782421	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001195088)	promoter-TSS (NM_001195088)	24.0	NM_001195089	217356.0	Mm.116675	NM_181856	ENSMUSG00000050106	Tmc8	EVIN2|Ever2|mFLJ00400	transmembrane channel-like gene family 8	protein-coding	0.561415447429053	0.676154980797188	0.641261947694751	0.612671273218214	1.6094692120233	2.38885523611395	3.32938520165527	0.931999926746379	5.92391698522742	3.09673351164492e-05	0.00118114172898934
Merged-chr9-22085478-4	chr9	22085372	22085572	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253898)	promoter-TSS (NM_001253898)	-45.0	NM_001253897	26940.0	Mm.425568	NM_012029	ENSMUSG00000066839	Ecsit	Sitpec	ECSIT signalling integrator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-79354818-4	chr15	79354712	79354912	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304832, intron 1 of 2)	intron (NM_001304832, intron 1 of 2)	6410.0	NM_001304832	17133.0	Mm.86646	NM_010755	ENSMUSG00000042622	Maff	-	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein F (avian)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-46483618-2	chr17	46483518	46483718	+	608.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162864, intron 2 of 14)	intron (NM_001162864, intron 2 of 14)	4057.0	NM_001162864	106763.0	Mm.297613	NM_175351	ENSMUSG00000015599	Ttbk1	AU017937|AW048023|C330008L01Rik	tau tubulin kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-59343793-2	chr2	59343693	59343893	+	788.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 16 of 20)	intron (NM_175464, intron 16 of 20)	42889.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106703316-2	chr11	106703216	106703416	+	890.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001305158, intron 2 of 14)	ORR1B2|LTR|ERVL-MaLR	11965.0	NM_001305158	18613.0	Mm.343951	NM_008816	ENSMUSG00000020717	Pecam1	C85791|Cd31|PECAM-1|Pecam	platelet/endothelial cell adhesion molecule 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-27543647-2	chr7	27543547	27543747	+	814.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_001317355, intron 2 of 13)	intron (NM_001317355, intron 2 of 13)	9571.0	NM_011116	18807.0	Mm.6483	NM_011116	ENSMUSG00000003363	Pld3	Sam-9	phospholipase D family, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-17277110-2	chr19	17276976	17277176	+	905.5	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	62429.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	3.45041190956264	3.29385392956899	2.49797959139974	2.71544980984895	1.75390386774672	1.22047417745746	1.17599475487186	1.13566922216489	-4.28054222178279	0.000119306456414621	0.00351417069737142
Merged-chr16-30514509-2	chr16	30514409	30514609	+	669.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172614, exon 10 of 10)	3' UTR (NM_172614, exon 10 of 10)	36069.0	NM_172614	224090.0	Mm.241459	NM_172614	ENSMUSG00000022537	Tmem44	1700007N03Rik|9330161C17Rik|B230220N21	transmembrane protein 44	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-110810184-4	chr5	110810105	110810305	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009469)	promoter-TSS (NM_009469)	-124.0	NM_001347394	22241.0	Mm.271898	NM_009469	ENSMUSG00000029512	Ulk1	AU041434|Unc51.1|mKIAA0722	unc-51 like kinase 1	protein-coding	4.76031089440356	4.41132350833076	4.65167769967814	3.98214720413969	3.53680059009782	4.44158876806344	4.18761217190265	2.72051063578978	-0.828384714494941	0.0900813753269029	0.4635957997593
Merged-chr2-50519146-7	chr2	50519038	50519238	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	164113.0	NR_154590	102634280.0		NR_154590		Gm48908	-	predicted gene 48908	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-66480347-2	chr16	66480247	66480447	+	868.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-176771.0	NR_040512	75501.0	Mm.394300	NR_040512	ENSMUSG00000092599	1700010K23Rik	-	RIKEN cDNA 1700010K23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-145709993-4	chr6	145709842	145710042	+	878.7222289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	93979.0	NM_009449	22147.0	Mm.270295	NM_009449	ENSMUSG00000067338	Tuba3b	M[a]7|Tuba7	tubulin, alpha 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-33980098-2	chr17	33980000	33980200	+	987.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	-1309.0	NR_004446	630499.0	Mm.440940	NM_001081015		H2-K2	EG630499|Gm7035|H-2K1|H-2K1K|H-2K2|H2-K1	histocompatibility 2, K region locus 2	pseudo	2.24371303261755	3.12735169547623	2.44730283056448	1.20537667031712	1.76876900658496	2.5582662109048	2.35470797592094	1.21059012405204	-0.767881780313243	0.456392340357615	0.919264728457769
Merged-chr1-181316846-3	chr1	181316744	181316944	+	593.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35784.0	NM_001160212	72978.0	Mm.338083	NM_028408	ENSMUSG00000026514	Cnih3	2900075G08Rik|CNIH-3	cornichon family AMPA receptor auxiliary protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-116993582-4	chr8	116993455	116993655	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026572)	promoter-TSS (NM_026572)	-106.0	NM_026572	68133.0	Mm.258462	NM_026572	ENSMUSG00000034424	Gcsh	1100001L02Rik|5730591C18Rik	glycine cleavage system protein H (aminomethyl carrier)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72892823-2	chr6	72892723	72892923	+	610.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019715, intron 1 of 6)	B2_Mm2|SINE|B2	6469.0	NM_001347231	74287.0	Mm.29194	NM_019715	ENSMUSG00000055239	Kcmf1	1700094M07Rik|Debt91|Pmcf	potassium channel modulatory factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-60373335-3	chr18	60373207	60373407	+	844.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021792)	promoter-TSS (NM_021792)	-309.0	NM_021792	60440.0	Mm.261140	NM_021792	ENSMUSG00000054072	Iigp1	2900074L10Rik|AI046432|AW111922|Ifgga1|Iigp|Irga6	interferon inducible GTPase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35065566-2	chr17	35065466	35065666	+	827.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_001462)	TTS (NR_001462)	618.0	NM_001033221	106722.0	Mm.390956	NM_001033221	ENSMUSG00000073414	Mpig6b	AU023871|C6orf25|G6b|Ng31	megakaryocyte and platelet inhibitory receptor G6b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-122491757-4	chr6	122491637	122491837	+	832.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5432.0	NM_027664	108653.0	Mm.277939	NM_027664	ENSMUSG00000040649	Rimklb	4931417E21Rik|4933426K21Rik|AA097693|AI325948|AU015629|Naags	ribosomal modification protein rimK-like family member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81416964-4	chr10	81416870	81417070	+	966.7666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_106141)	promoter-TSS (NR_106141)	-673.0	NR_106141	102465778.0		NR_106141	ENSMUSG00000105379	Mir1191b	mmu-mir-1191b	microRNA 1191b	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-113271444-4	chr13	113271388	113271588	+	917.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	61829.0	NM_023612	71690.0	Mm.38929	NM_023612	ENSMUSG00000042379	Esm1	0610042H23Rik|AV004503|ESM-1	endothelial cell-specific molecule 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-73552803-4	chr14	73552698	73552898	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361638)	promoter-TSS (NM_001361638)	12.0	NM_001361638	20916.0	Mm.38951	NM_011506	ENSMUSG00000022110	Sucla2	4930547K18Rik|A-SCS|SCS-betaA	succinate-Coenzyme A ligase, ADP-forming, beta subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-14265961-2	chr3	14265861	14266061	+	598.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-97156.0	NR_033591	622229.0	Mm.486084	NR_033591		Gm6300	EG622229	solute carrier family 7 (cationic amino acid transporter, y+ system), member pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-3234301-4	chr15	3234135	3234335	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10B|LTR|ERVL	-36532.0	NM_001042613	20363.0	Mm.392203	NM_009155	ENSMUSG00000064373	Selenop	AU018766|D15Ucla1|Se-P|Sepp1|selp	selenoprotein P	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-24750459-2	chr5	24750359	24750559	+	951.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_153076)	TTS (NM_153076)	7384.0	NM_153076	214301.0	Mm.63484	NM_153076	ENSMUSG00000038135	Crygn	-	crystallin, gamma N	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-30839990-4	chr5	30839895	30840095	+	820.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133350, intron 1 of 6)	intron (NM_133350, intron 1 of 6)	-21812.0	NM_001310516	100732.0	Mm.332295	NM_133350	ENSMUSG00000029166	Mapre3	AI790651|EB2|EB3|EBF3|RP3	microtubule-associated protein, RP/EB family, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16296172-2	chr7	16296072	16296272	+	624.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9377.0	NM_001136471	243846.0	Mm.482401	NM_172297	ENSMUSG00000041375	Ccdc9	2600011L02Rik	coiled-coil domain containing 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-50820248-3	chr14	50820154	50820354	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009632, intron 13 of 15)	intron (NM_009632, intron 13 of 15)	12338.0	NM_009632	11546.0	Mm.281482	NM_009632	ENSMUSG00000036023	Parp2	ADPRT-2|ARTD2|Adprt2|Adprtl2|Aspartl2|C78626|PARP-2|mPARP-2|pADPRT-2	poly (ADP-ribose) polymerase family, member 2	protein-coding	3.76010423723818	3.66158287648798	2.75514091723625	4.62093516026148	1.87526575619634	1.90047300256267	2.28893105204731	3.0300851864036	-2.44402294905688	0.00061323946926893	0.0132331783314544
Merged-chr11-49081570-2	chr11	49081470	49081670	+	832.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271677, intron 1 of 2)	intron (NM_001271677, intron 1 of 2)	4983.0	NM_001271677	15953.0	Mm.24769	NM_008330	ENSMUSG00000078920	Ifi47	47kDa|IRG-47|Ifggc1|Igrd|Iigp4|Iipg4|Irgd	interferon gamma inducible protein 47	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-34515935-4	chr19	34515836	34516036	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111100, intron 3 of 9)	intron (NM_001111100, intron 3 of 9)	11538.0	NM_001111100	16889.0	Mm.157545	NM_021460	ENSMUSG00000024781	Lipa	AA960673|Lal|Lip-1|Lip1	lysosomal acid lipase A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-17343230-2	chr10	17343130	17343330	+	658.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F|LINE|L1	-247448.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5424945-4	chr19	5424860	5425060	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001256515)	promoter-TSS (NM_001256515)	19.0	NM_024176	66556.0	Mm.275446	NM_024176	ENSMUSG00000024914	Drap1	2310074H19Rik|NC2-alpha	Dr1 associated protein 1 (negative cofactor 2 alpha)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-25138364-4	chr19	25138240	25138440	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028785, intron 23 of 47)	B1_Mur2|SINE|Alu	-98635.0	NM_181404	107351.0	Mm.260722	NM_181404	ENSMUSG00000032702	Kank1	A930031B09Rik|AU015049|AW121052|Ankrd15|D330024H06Rik|mKIAA0172	KN motif and ankyrin repeat domains 1	protein-coding	5.92340979687763	5.7402163109159	6.36321943801658	5.79397789555576	4.8487665688966	4.80544680243894	5.17985049128435	4.99929276796702	-1.15263464263311	3.79570340981082e-05	0.0013969585739543
Merged-chr8-36762020-2	chr8	36761963	36762163	+	653.5	f0_balb.idr|f1_c57bl6.idr	intron (NM_001194940, intron 5 of 17)	intron (NM_001194940, intron 5 of 17)	-29009.0	NM_001194941	50768.0	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	2.11196654693727	3.33511128029424	2.90957193256963	3.74627123667911	3.29306869227954	1.66264836677826	4.12359242157999	3.14376561339584	0.259090114429551	0.734278395243066	0.998431161219273
Merged-chr16-91071134-2	chr16	91071034	91071234	+	670.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1989.0	NM_028905	74387.0	Mm.236220	NM_028905	ENSMUSG00000039851	4932438H23Rik	4931406G06Rik|AI550392	RIKEN cDNA 4932438H23 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-59397704-4	chr2	59397614	59397814	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-11032.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-48883652-2	chr7	48883552	48883752	+	818.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_155436, intron 1 of 1)	intron (NR_155436, intron 1 of 1)	-2056.0	NM_001360812	108961.0	Mm.240566	NM_001013368	ENSMUSG00000046179	E2f8	4432406C08Rik|AA410048	E2F transcription factor 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-29827812-4	chr2	29827707	29827907	+	845.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026615, intron 1 of 4)	intron (NM_026615, intron 1 of 4)	418.0	NM_026615	68205.0	Mm.20273	NM_026615	ENSMUSG00000069020	Urm1	2900073H19Rik	ubiquitin related modifier 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-131530151-2	chr2	131530051	131530251	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32134.0	NM_013460	11550.0	Mm.389380	NM_013460	ENSMUSG00000027335	Adra1d	Adra-1|Adra1|Adra1a|Gpcr8|Spr8|[a]1d|alpha1D-AR	adrenergic receptor, alpha 1d	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-54134291-2	chr10	54134191	54134391	+	771.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58369.0	NR_038016	100502920.0	Mm.403982	NR_038016	ENSMUSG00000097069	Gm16998	-	predicted gene, 16998	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114914253-2	chr11	114914153	114914353	+	803.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20133.0	NM_001347651	217304.0	Mm.185355	NM_199221	ENSMUSG00000063193	Cd300lb	CLM-7|Clm7|Gm253|LMIR5	CD300 molecule like family member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-100029833-2	chr10	100029733	100029933	+	807.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347156, intron 1 of 8)	intron (NM_001347156, intron 1 of 8)	14012.0	NM_013598	17311.0	Mm.45124	NM_013598	ENSMUSG00000019966	Kitl	Clo|Con|Gb|Kitlg|Mgf|SCF|SF|SLF|Sl|blz|contrasted	kit ligand	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-144000510-10	chr1	144000405	144000605	+	921.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009061, exon 5 of 5)	3' UTR (NM_009061, exon 5 of 5)	3644.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-10532520-4	chr18	10532439	10532639	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083628, intron 18 of 32)	intron (NM_001083628, intron 18 of 32)	77813.0	NM_001081222	77805.0	Mm.210996	NM_144542	ENSMUSG00000024293	Esco1	A930014I12Rik	establishment of sister chromatid cohesion N-acetyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-124917186-2	chr10	124917086	124917286	+	582.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	391630.0	NM_001358915	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-37873687-4	chr13	37873495	37873695	+	980.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039188, intron 1 of 9)	intron (NM_001039188, intron 1 of 9)	-14839.0	NR_033218	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-4138226-2	chr7	4138126	4138326	+	624.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_172736, intron 1 of 14)	intron (NM_172736, intron 1 of 14)	1170.0	NM_172736	232798.0	Mm.22831	NM_172736	ENSMUSG00000035545	Leng8	AW049671	leukocyte receptor cluster (LRC) member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75677991-4	chr11	75677845	75678045	+	722.05835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1314.0	NM_001277219	12928.0	Mm.280125	NM_133656	ENSMUSG00000017776	Crk	Crk-I|Crk-II|Crk-III|Crk3|CrkIII|Crko|c-Crk|p38	v-crk avian sarcoma virus CT10 oncogene homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-103027847-4	chr11	103027725	103027925	+	998.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008707)	promoter-TSS (NM_008707)	-718.0	NM_008707	18107.0	Mm.10265	NM_008707	ENSMUSG00000020936	Nmt1	AW536594	N-myristoyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-65938259-6	chr3	65938100	65938300	+	725.611084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20049.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134171046-4	chr6	134170934	134171134	+	813.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 3 of 8)	intron (NM_001303102, intron 3 of 8)	135334.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	0.317404041090732	1.12247562887926	0.53054591757573	0.663597572984348	0.319073807557152	1.13582083787509	0.536149331379247	0.329732716479148	-0.325328146513374	0.853679752196688	1
Merged-chr19-60873680-2	chr19	60873580	60873780	+	820.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007452, intron 1 of 6)	intron (NM_007452, intron 1 of 6)	858.0	NM_007452	11757.0	Mm.29821	NM_007452	ENSMUSG00000024997	Prdx3	AW822249|Aop1|D0Tohi1|Ef2l|Mer5|Prx3|SP22|TDXM	peroxiredoxin 3	protein-coding	-0.971312285390935	-1.32150654078059	-1.33147993744313	-1.33967238241123	-1.35121754901196	-1.3193452641188	-1.17229511841967	-1.33820593867886	-0.987986103315274	0.773449200295012	1
Merged-chr14-70168111-4	chr14	70168021	70168221	+	965.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145978, intron 6 of 9)	intron (NM_145978, intron 6 of 9)	-8619.0	NM_001004155	268759.0	Mm.12148	NM_001004155	ENSMUSG00000044551	9930012K11Rik	-	RIKEN cDNA 9930012K11 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-136532201-3	chr2	136532098	136532298	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175667)	promoter-TSS (NM_175667)	-123.0	NM_175667	319196.0	Mm.477841	NM_175667	ENSMUSG00000074771	Ankef1	AV276460|Ankrd5	ankyrin repeat and EF-hand domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-121365999-4	chr10	121365908	121366108	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029364, intron 1 of 13)	intron (NM_029364, intron 1 of 13)	918.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	6.19615728616067	6.32878023384283	6.12484747316298	6.19606053561941	5.72204731813371	5.69251686239512	5.67094919760926	5.93536072553282	-0.497031106049628	0.0263289962793413	0.216987356181751
Merged-chr17-10824769-4	chr17	10824677	10824877	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027032, intron 1 of 4)	intron (NM_027032, intron 1 of 4)	15414.0	NM_027032	69310.0	Mm.18889	NM_027032	ENSMUSG00000037196	Pacrg	1700008H23Rik	PARK2 co-regulated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35930722-1	chr17	35930622	35930822	+	549.0	f1_balb.idr	exon (NM_001163818, exon 18 of 19)	exon (NM_001163818, exon 18 of 19)	11450.0	NM_001357740	52040.0	Mm.29385	NM_175934	ENSMUSG00000039220	Ppp1r10	2610025H06Rik|Cat53|D17Ertd808e|Fb19|Pnuts	protein phosphatase 1, regulatory subunit 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-83815820-4	chr18	83815728	83815928	+	919.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	270734.0	NM_001081300	110796.0	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-89356605-2	chr16	89356505	89356705	+	704.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47169.0	NM_028621	170656.0	Mm.46109	NM_028621	ENSMUSG00000058368	Krtap21-1	1110017B05Rik|AI506979|KAP21.1|Krtap16-7	keratin associated protein 21-1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-8928965-4	chr3	8928866	8929066	+	859.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001025261, exon 8 of 8)	3' UTR (NM_001025261, exon 8 of 8)	-5109.0	NM_025434	66230.0	Mm.38460	NM_025434	ENSMUSG00000040269	Mrps28	1500012D08Rik|AW061224	mitochondrial ribosomal protein S28	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45028532-2	chr7	45028439	45028639	+	739.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_175022, exon 14 of 14)	exon (NM_175022, exon 14 of 14)	8942.0	NM_001360133	20130.0	Mm.389894	NM_009101	ENSMUSG00000038387	Rras	AI573426	related RAS viral (r-ras) oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-13362214-2	chr15	13362114	13362314	+	777.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-188539.0	NM_007666	12563.0	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-64637589-4	chr14	64637497	64637697	+	969.4874880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14934.0	NM_001081177	16554.0	Mm.23611	NM_001081177	ENSMUSG00000060012	Kif13b	5330429L19Rik|6030414C01|AI429803|C130021D12Rik|GAKIN	kinesin family member 13B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-35100986-2	chr9	35100886	35101086	+	550.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009178, intron 1 of 10)	intron (NM_009178, intron 1 of 10)	-15742.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-122290904-4	chr3	122290803	122291003	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	2800.0	NR_030439	791077.0		NR_030439	ENSMUSG00000076456	Mir760	Mirn760|mir-760|mmu-mir-760	microRNA 760	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-65701097-1	chr11	65700997	65701197	+	585.0	f0_balb.idr	intron (NM_001316368, intron 7 of 10)	RMER16_Mm|LTR|ERVK	33735.0	NR_030417	791070.0		NR_030417	ENSMUSG00000076460	Mir744	Mirn744|mir-744|mmu-mir-744	microRNA 744	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-127204979-4	chr1	127204884	127205084	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145128)	promoter-TSS (NM_145128)	-2.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	4.35952661534796	4.15368191103504	3.74473772697203	2.94934747674824	3.32091480614471	3.90139844323897	4.59712304918866	3.57956738508509	0.0448010402326502	0.933466574563457	0.998431161219273
Merged-chr7-127992821-2	chr7	127992721	127992921	+	804.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_023258, exon 3 of 3)	exon (NM_023258, exon 3 of 3)	1046.0	NM_023258	66824.0	Mm.24163	NM_023258	ENSMUSG00000030793	Pycard	9130417A21Rik|Asc|CARD5|TMS-1|TNS1|masc	PYD and CARD domain containing	protein-coding	0.465119396095427	0.0100570843125973	0.57164550982981	0.000405785153466787	-0.00553729707060685	0.0112848243774857	0.582762547403689	0.00114029089073303	-0.789290489853457	0.726011853450097	1
Merged-chr13-100873589-5	chr13	100873473	100873673	+	754.179993	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40146.0	NM_022885	69048.0	Mm.402215	NM_022885	ENSMUSG00000021629	Slc30a5	1810010K08Rik|AF233321|ZNT5|ZTL1|ZnT-5|Zntl1	solute carrier family 30 (zinc transporter), member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128213111-6	chr10	128213034	128213234	+	820.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1340.0	NM_025716	66701.0	Mm.29694	NM_025716	ENSMUSG00000051346	Spryd4	4633402N23Rik|AA114801	SPRY domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-44283546-3	chr12	44283429	44283629	+	972.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026164, exon 2 of 10)	exon (NM_026164, exon 2 of 10)	14375.0	NM_026164	67452.0	Mm.54126	NM_026164	ENSMUSG00000036257	Pnpla8	1200006O19Rik|AI467579|Ipla2(gamma)	patatin-like phospholipase domain containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171410373-4	chr1	171410260	171410460	+	999.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001305677)	promoter-TSS (NM_001305677)	-953.0	NM_001305678	22278.0	Mm.8	NM_009480	ENSMUSG00000026641	Usf1	bHLHb11	upstream transcription factor 1	protein-coding	3.50538894986263	4.20257655056461	2.43471620140777	2.81272188606898	3.85465094778289	3.47875499014388	2.6317099364941	3.82648252110709	0.180836362312554	0.778356481905369	0.998431161219273
Merged-chr15-97949835-4	chr15	97949716	97949916	+	966.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14413.0	NM_001356508	380967.0	Mm.196630	NM_201359	ENSMUSG00000052369	Tmem106c	AI046681|BC046621|D15Ertd405e	transmembrane protein 106C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-84340780-4	chr17	84340717	84340917	+	841.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183021, intron 26 of 37)	intron (NM_183021, intron 26 of 37)	125391.0	NM_183021	240174.0	Mm.246767	NM_177826	ENSMUSG00000024251	Thada	6530405K19|A930021O22|AU019899|BC052885|GITA	thyroid adenoma associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-63445576-2	chr14	63445476	63445676	+	650.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_177628, intron 2 of 3)	intron (NM_177628, intron 2 of 3)	9182.0	NM_177628	219148.0	Mm.37882	NM_177628	ENSMUSG00000035095	Fam167a	A030013D21	family with sequence similarity 167, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-62396013-1	chr4	62395913	62396113	+	540.0	f0_balb.idr	intron (NM_139291, intron 3 of 3)	RLTR19-int|LTR|ERVK	12610.0	NM_139291	66440.0	Mm.109930	NM_139291	ENSMUSG00000066149	Cdc26	2010012C09Rik	cell division cycle 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100489687-2	chr7	100489587	100489787	+	613.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3671.0	NM_011671	22228.0	Mm.171378	NM_011671	ENSMUSG00000033685	Ucp2	Slc25a8|UCP 2|UCPH	uncoupling protein 2 (mitochondrial, proton carrier)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-53303365-2	chr11	53303265	53303465	+	658.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	-2886.0	NM_008300	15525.0	Mm.239865	NM_008300	ENSMUSG00000020361	Hspa4	70kDa|AI317151|APG-2|Hsp110|Hsp70RY|mKIAA4025	heat shock protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6057897-4	chr19	6057870	6058070	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001160239)	promoter-TSS (NM_001160239)	3.0	NM_001190436	14109.0	Mm.329631	NM_007990	ENSMUSG00000038274	Fau	MNSFbeta	Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed (fox derived)	protein-coding	2.54453316814072	2.9405861239895	2.52180083024204	2.67496861114658	2.74157416355875	2.48433238335472	2.86832354025417	2.68813670506428	0.0530519799638376	0.939826260160971	0.998431161219273
Merged-chr2-4562090-2	chr2	4561990	4562190	+	613.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177844, intron 1 of 11)	intron (NM_001177844, intron 1 of 11)	2336.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-12726552-2	chr18	12726452	12726652	+	775.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028341, intron 8 of 13)	intron (NM_028341, intron 8 of 13)	11741.0	NR_035471	100316699.0		NR_035471	ENSMUSG00000087950	Mir1948	mir-1948|mmu-mir-1948	microRNA 1948	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119420583-2	chr11	119420483	119420683	+	933.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30111.0	NR_035453	100316690.0		NR_035453	ENSMUSG00000088015	Mir1932	mir-1932|mmu-mir-1932	microRNA 1932	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-78120036-2	chr11	78119936	78120136	+	904.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_145430, intron 1 of 2)	intron (NM_145430, intron 1 of 2)	25363.0	NM_145430	216971.0	Mm.119387	NM_145430	ENSMUSG00000037750	Fam222b	9630020I17Rik	family with sequence similarity 222, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-142254181-2	chr2	142254081	142254281	+	585.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013802, intron 11 of 18)	intron (NM_001013802, intron 11 of 18)	647283.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71592117-4	chr8	71592034	71592234	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025396)	promoter-TSS (NM_025396)	-50.0	NM_025396	66171.0	Mm.282284	NM_025396	ENSMUSG00000031807	Pgls	1110030K05Rik|AI447866|Plgs	6-phosphogluconolactonase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-77608229-2	chr9	77608129	77608329	+	585.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28503.0	NM_172925	244923.0	Mm.138238	NM_172925	ENSMUSG00000044938	Klhl31	9830147P19Rik|D930047P17Rik|Kbtbd1	kelch-like 31	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-34812907-4	chr7	34812784	34812984	+	984.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175140)	promoter-TSS (NM_175140)	-173.0	NM_175140	68947.0	Mm.29380	NM_175140	ENSMUSG00000060402	Chst8	1500011J21Rik|AI426009	carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-75772820-3	chr2	75772717	75772917	+	680.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59360.0	NM_172666	228061.0	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	-0.946189498902753	-0.931575358611085	-0.94076171000006	-0.942807383787865	-0.573918262386353	-0.929017710499158	-0.940175780086088	-0.522856136696833	2.89469829273601	0.348654519402419	1
Merged-chr7-114460040-1	chr7	114459940	114460140	+	730.0	f0_balb.idr	intron (NM_011055, intron 1 of 15)	Lx5b|LINE|L1	44786.0	NM_011055	18576.0	Mm.430730	NM_011055	ENSMUSG00000030671	Pde3b	9830102A01Rik|AI847709	phosphodiesterase 3B, cGMP-inhibited	protein-coding	0.0940757875353361	-0.350553045549706	-0.35450188357251	0.252716765486497	-0.220644501762771	-0.34966131395432	-0.353631939095662	-0.357010215641989	-2.70105071784971	0.279917117041813	1
Merged-chr7-128238245-8	chr7	128238140	128238340	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177001)	promoter-TSS (NM_177001)	-209.0	NM_177001	100043133.0	Mm.183647	NM_177001	ENSMUSG00000062944	9130023H24Rik	GLI4	RIKEN cDNA 9130023H24 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-5833628-2	chr9	5833528	5833728	+	711.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-334858.0	NM_001357398	71785.0	Mm.390122	NM_027924	ENSMUSG00000032006	Pdgfd	1110003I09Rik	platelet-derived growth factor, D polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-85081419-4	chr8	85081329	85081529	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026399)	promoter-TSS (NM_026399)	466.0	NM_001001493	414077.0	Mm.35790	NM_001001493	ENSMUSG00000059355	Wdr83os	-	WD repeat domain 83 opposite strand	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128370572-2	chr2	128370472	128370672	+	651.666626	f1_balb.idr|f1_c57bl6.idr	intron (NR_028590, intron 1 of 2)	intron (NR_028590, intron 1 of 2)	58779.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81016851-4	chr10	81016764	81016964	+	836.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1939.0	NM_010319	14708.0	Mm.222496	NM_010319	ENSMUSG00000048240	Gng7	AI840417	guanine nucleotide binding protein (G protein), gamma 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-115675012-2	chr6	115674912	115675112	+	868.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_152134)	promoter-TSS (NR_152134)	876.0	NM_001356334	110157.0	Mm.184163	NM_029780	ENSMUSG00000000441	Raf1	6430402F14Rik|AA990557|BB129353|Craf1|D830050J10Rik|Raf-1|c-Raf|cRaf|v-Raf	v-raf-leukemia viral oncogene 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-99331694-3	chr13	99331576	99331776	+	998.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026873, intron 6 of 9)	intron (NM_026873, intron 6 of 9)	13002.0	NM_026873	68927.0	Mm.276502	NM_026873	ENSMUSG00000021650	Ptcd2	1190005P08Rik	pentatricopeptide repeat domain 2	protein-coding	2.74055541745942	2.61201195081272	1.74792061796495	1.70186803536142	2.50145495411616	1.33175015980437	2.21939762461422	2.02223470842947	-0.472674393161525	0.625407573749976	0.980912176761026
Merged-chr11-120721705-6	chr11	120721784	120721984	+	831.222229	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_153545)	TTS (NM_153545)	416.0	NM_133223	170758.0	Mm.34008	NM_133223	ENSMUSG00000018012	Rac3	Rac1B	Rac family small GTPase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-173456532-4	chr1	173456447	173456647	+	868.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013779, intron 5 of 8)	intron (NM_001013779, intron 5 of 8)	35943.0	NM_001013779	383619.0	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-40183656-2	chr4	40183556	40183756	+	548.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007386, intron 13 of 20)	intron (NM_007386, intron 13 of 20)	40391.0	NM_007386	11428.0	Mm.331547	NM_007386	ENSMUSG00000028405	Aco1	Aco-1|Irebp|Irp1	aconitase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-84133712-2	chr15	84133593	84133793	+	643.75	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-10518.0	NM_029427	75772.0	Mm.159565	NM_029427	ENSMUSG00000018868	Pnpla5	4833426H19Rik|GS2L	patatin-like phospholipase domain containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-64106263-1	chr15	64106163	64106363	+	1000.0	f1_balb.idr	intron (NM_001276461, intron 24 of 28)	intron (NM_001276461, intron 24 of 28)	-45815.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	-0.619962956290066	-0.418491462757758	-0.612966848120009	-0.615601245945461	0.0222733889062357	-0.414037957362952	-0.61221279868684	-0.615141398609008	2.36867699363764	0.375119237502648	1
Merged-chr1-175924102-3	chr1	175924012	175924212	+	666.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3783.0	NM_001290692	226720.0	Mm.11282	NM_001290692	ENSMUSG00000104158	Becn2	Beclin-2|Gm104	beclin 2	protein-coding	1.42051716215118	1.33256309185964	0.646024149051489	0.823541866644776	1.16709320709137	0.65971382365785	1.40040664898922	0.638825484251108	-0.370083116323881	0.811728899041489	0.998431161219273
Merged-chr5-107986372-4	chr5	107986257	107986457	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026062, intron 1 of 4)	MamSINE1|SINE|tRNA	720.0	NM_026062	67266.0	Mm.277897	NM_026062	ENSMUSG00000029270	Fam69a	2900024C23Rik|AI315274	family with sequence similarity 69, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-113692852-5	chr6	113692717	113692917	+	825.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 11 of 11)	RMER17C-int|LTR|ERVK	-4233.0	NM_001347356	381801.0	Mm.333322	NM_001033463	ENSMUSG00000056952	Tatdn2	AI646012|mKIAA0218	TatD DNase domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-105424485-4	chr11	105424411	105424611	+	977.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039242, intron 4 of 5)	intron (NM_001039242, intron 4 of 5)	32224.0	NM_172568	632687.0	Mm.121570	NM_172568	ENSMUSG00000078627	March10	4933417C16Rik|AV039223|Rnf190	membrane-associated ring finger (C3HC4) 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-44201395-1	chr16	44201295	44201495	+	542.0	f1_balb.idr	intron (NM_001029889, intron 4 of 7)	intron (NM_001029889, intron 4 of 7)	27998.0	NM_001029889	207806.0	Mm.310566	NM_001029889	ENSMUSG00000068284	Usf3	5530400K22Rik|Gm1779|Gm608|mKIAA2018	upstream transcription factor family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-117455059-2	chr6	117454959	117455159	+	703.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40176.0	NR_152214	100126203.0	Mm.217172	NR_152214		6820426E19Rik	Gm43983	RIKEN cDNA 6820426E19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-18026548-4	chr2	18026416	18026616	+	853.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028378)	promoter-TSS (NR_028378)	-733.0	NR_028378	100034739.0	Mm.401643	NR_028378		Gm17762	-	predicted gene, 17762	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10983357-2	chr19	10983257	10983457	+	635.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001034898, intron 2 of 6)	intron (NM_001034898, intron 2 of 6)	-8687.0	NM_023529	69826.0	Mm.273404	NM_023529	ENSMUSG00000024731	Ms4a10	2010001N17Rik	membrane-spanning 4-domains, subfamily A, member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-11206248-2	chr2	11206148	11206348	+	709.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008859, intron 1 of 17)	intron (NM_008859, intron 1 of 17)	33866.0	NM_008859	18761.0	Mm.329993	NM_008859	ENSMUSG00000026778	Prkcq	A130035A12Rik|AW494342|PKC-0|PKC-theta|PKCtheta|Pkcq	protein kinase C, theta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-120056340-4	chr6	120056236	120056436	+	828.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17681.0	NM_001185021	232341.0	Mm.333349	NM_198703	ENSMUSG00000045962	Wnk1	6430573H23Rik|EG406236|Hsn2|Prkwnk1|mKIAA0344	WNK lysine deficient protein kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-133585109-4	chr3	133585032	133585232	+	957.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-40742.0	NM_001346736	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-67348052-4	chr17	67347944	67348144	+	813.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	6415.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167893562-2	chr2	167893462	167893662	+	583.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38765.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-58555691-4	chr18	58555588	58555788	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081072)	promoter-TSS (NM_001081072)	-552.0	NM_001081072	225579.0	Mm.258517	NM_001081072	ENSMUSG00000024600	Slc27a6	4732438L20Rik|FACVL2|FATP6|VLCS-H1	solute carrier family 27 (fatty acid transporter), member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-143929922-3	chr1	143929827	143930027	+	773.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	74222.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80575892-4	chr7	80575752	80575952	+	901.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-40733.0	NM_001042527	12144.0	Mm.12932	NM_007550	ENSMUSG00000030528	Blm	-	Bloom syndrome, RecQ like helicase	protein-coding	1.91323735056862	1.96598021936982	2.25834533082411	3.71860792037145	2.65127179111555	1.44611837715365	3.28279365195569	2.59072165557245	-0.159023787793176	0.860972708040601	0.998431161219273
Merged-chr4-141665457-2	chr4	141665481	141665681	+	893.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1466.0	NM_001033150	69582.0	Mm.33220	NM_001033150	ENSMUSG00000028917	Plekhm2	2310034J19Rik|AI854247|mKIAA0842	pleckstrin homology domain containing, family M (with RUN domain) member 2	protein-coding	-2.05752322593321	-2.15521190974092	-2.16307242109104	-2.16952927915413	-2.17938029103484	-2.15350850414045	-2.16129297361887	-2.16837350464794	-0.683654500252594	0.846597994014493	1
Merged-chr2-35491392-2	chr2	35491292	35491492	+	695.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-29943.0	NM_001145821	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98551135-4	chr11	98551027	98551227	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166494)	promoter-TSS (NM_001166494)	30.0	NM_001166494	69376.0	Mm.55996	NM_027061	ENSMUSG00000017195	Zpbp2	1700017D11Rik|2610022C02Rik|ZPBPL	zona pellucida binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-52477644-4	chr6	52477561	52477761	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14790.0	NR_046049	74304.0	Mm.490579	NR_046049	ENSMUSG00000107895	1700094M24Rik	-	RIKEN cDNA 1700094M24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-19958086-3	chr8	19957987	19958187	+	792.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001270553, intron 6 of 9)	RMER16_Mm|LTR|ERVK	228511.0	NM_001039553	626415.0	Mm.425517	NM_001039553	ENSMUSG00000096265	4930467E23Rik	TSAP	RIKEN cDNA 4930467E23 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-93861428-4	chr11	93861290	93861490	+	860.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013375, intron 12 of 13)	intron (NM_001013375, intron 12 of 13)	24376.0	NM_001013375	217109.0	Mm.379350	NM_001013375	ENSMUSG00000054079	Utp18	6230425C22Rik|6430513M13|Wdr50	UTP18 small subunit processome component	protein-coding	1.78450993497429	1.22332279322908	1.43269332326549	2.38197112769425	1.79910650788996	2.0176881551246	1.94974468113686	2.54256797433475	0.829675163651581	0.421864779216593	0.900322118218157
Merged-chr17-47676722-3	chr17	47676624	47676824	+	799.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198421, intron 4 of 6)	intron (NM_198421, intron 4 of 6)	-10886.0	NR_045945	100415787.0	Mm.392206	NR_045945	ENSMUSG00000084880	Tomm6os	Gm14872|Prickle4os	translocase of outer mitochondrial membrane 6, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-181919159-2	chr2	181919041	181919241	+	727.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	54781.0	NM_025901	67005.0	Mm.271986	NM_025901	ENSMUSG00000038628	Polr3k	12.3kDa|1500004O14Rik|AI196849|AU014893|C11|RPC10|RPC11	polymerase (RNA) III (DNA directed) polypeptide K	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133222638-1	chr4	133222538	133222738	+	689.0	f1_c57bl6.idr	intron (NM_027152, intron 4 of 5)	intron (NM_027152, intron 4 of 5)	1829.0	NM_027152	69655.0	Mm.285685	NM_027152	ENSMUSG00000028865	Cd164l2	2310047N01Rik	CD164 sialomucin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-18647038-4	chr19	18646941	18647141	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145497, intron 8 of 8)	PB1D10|SINE|Alu	15025.0	NM_145497	225994.0	Mm.211595	NM_145497	ENSMUSG00000037847	Nmrk1	AA408380|D630020N23Rik|Nrk1	nicotinamide riboside kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28859940-2	chr17	28859840	28860040	+	785.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001034885, intron 1 of 9)	intron (NM_001034885, intron 1 of 9)	1529.0	NM_001034885	433091.0	Mm.328925	NM_001034885	ENSMUSG00000043286	Pnpla1	-	patatin-like phospholipase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-128872469-3	chr6	128872366	128872566	+	874.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001254946, intron 2 of 2)	BGLII_B|LTR|ERVK	-15121.0	NM_001289706	93675.0	Mm.391513	NM_020257	ENSMUSG00000030365	Clec2i	Clr-g|Clrg|Dcl1|LCL-1|OCILrP2	C-type lectin domain family 2, member i	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-24299541-4	chr7	24299460	24299660	+	999.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009561)	promoter-TSS (NM_009561)	-11.0	NM_009561	22719.0	Mm.12832	NM_009561	ENSMUSG00000050605	Zfp61	-	zinc finger protein 61	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101900027-2	chr7	101899927	101900127	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_027532)	TTS (NM_027532)	3696.0	NM_001291349	75430.0	Mm.284491	NM_027532	ENSMUSG00000030649	Anapc15	3200002M19Rik|6330414C15Rik|APC15	anaphase prompoting complex C subunit 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-71942649-2	chr9	71942549	71942749	+	690.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011544, intron 6 of 20)	Tigger7|DNA|TcMar-Tigger	-46553.0	NM_001253863	21406.0	Mm.171615	NM_011544	ENSMUSG00000032228	Tcf12	A130037E08Rik|ALF1|HEB|HEBAlt|HTF-4|HTF4|ME1|REB|bHLHb20	transcription factor 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-46745963-4	chr18	46745842	46746042	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009681, intron 1 of 5)	intron (NM_009681, intron 1 of 5)	4066.0	NM_009681	11777.0	Mm.312536	NM_009681	ENSMUSG00000024480	Ap3s1	-	adaptor-related protein complex 3, sigma 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-25303687-4	chr12	25303599	25303799	+	963.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	174525.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	2.16389979529337	3.01845211559199	3.51858881287568	3.12329010842768	3.21500432197712	2.63187321364871	3.610613634614	3.04986068779926	0.232341209616242	0.726975110460684	0.998431161219273
Merged-chr14-27562819-4	chr14	27562714	27562914	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPLTR3-int|LTR|ERVK	-54354.0	NM_177111	320234.0	Mm.247767	NM_177111	ENSMUSG00000046753	Ccdc66	E230015L20Rik	coiled-coil domain containing 66	protein-coding	-0.662826441749988	-1.00555184936033	-1.01675512286785	-1.01992432642343	-0.654846858003193	-1.00312405325568	-1.01421894731451	-1.01959449741028	0.0418081237259606	0.989738874530268	1
Merged-chr4-34389398-4	chr4	34389305	34389505	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-161210.0	NM_001007589	433693.0	Mm.389532	NM_026019	ENSMUSG00000028291	Akirin2	2700059D21Rik|AA114675|AA522011|AU019887|Akirin-2	akirin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-50186593-2	chr17	50186493	50186693	+	564.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_181397, intron 1 of 9)	intron (NM_181397, intron 1 of 9)	3904.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-20804482-1	chr14	20804382	20804582	+	571.0	f0_balb.idr	Intergenic	Intergenic	10243.0	NR_153779	102631887.0	Mm.122292	NR_153779	ENSMUSG00000114241	Gm30108	-	predicted gene, 30108	ncRNA	0.218884438611972	0.0869202329797611	0.080472010616906	0.824554374031991	0.223415841923042	0.0883699486403138	0.0818966314914329	0.833396646216094	0.0302683508441657	0.988157410043917	1
Merged-chr2-160364299-2	chr2	160364199	160364399	+	935.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010658, exon 1 of 1)	3' UTR (NM_010658, exon 1 of 1)	2766.0	NM_010658	16658.0	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71680685-1	chr8	71680585	71680785	+	639.5	f1_c57bl6.idr	exon (NM_010589, exon 8 of 25)	exon (NM_010589, exon 8 of 25)	4302.0	NM_010589	16453.0	Mm.249645	NM_010589	ENSMUSG00000031805	Jak3	fae|wil	Janus kinase 3	protein-coding	3.32223229932115	3.26433238316151	2.5733393104851	3.3298561378488	2.92815463136107	1.4684877932815	2.14146887815596	1.37590398335973	-1.89740123996915	0.026688564215419	0.219121391507708
Merged-chr2-91932123-2	chr2	91932023	91932223	+	921.875	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291482)	promoter-TSS (NM_001291482)	174.0	NM_001291483	17242.0	Mm.906	NM_010784	ENSMUSG00000027239	Mdk	MK|Mek	midkine	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-77462026-1	chr1	77461926	77462126	+	769.5	f0_balb.idr	intron (NM_007936, intron 3 of 17)	intron (NM_007936, intron 3 of 17)	34742.0	NR_105770	102465180.0		NR_105770	ENSMUSG00000099141	Mir6352	Gm27481|mmu-mir-6352	microRNA 6352	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-54693009-3	chr13	54692919	54693119	+	763.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027396, intron 1 of 10)	intron (NR_027396, intron 1 of 10)	941.0	NR_027395	105239.0	Mm.25366	NM_134064	ENSMUSG00000034928	Rnf44	AI854545|mKIAA1100	ring finger protein 44	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-35267277-2	chr12	35267206	35267406	+	754.75	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-72409.0	NR_030449	751520.0		NR_030449	ENSMUSG00000076253	Mir680-3	Mirn680-3	microRNA 680-3	ncRNA	1.59660120910332	1.01864143561778	0.996299345597828	1.6896522943227	1.16065118742379	1.8244056936549	2.10308511721517	2.42301596260498	1.77844382111904	0.135700561853621	0.575448400490013
Merged-chr8-19535394-2	chr8	19535294	19535494	+	576.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	40297.0	NM_139220	246080.0	Mm.207067	NM_139220	ENSMUSG00000037790	Defb7	BD-7|Defb15	defensin beta 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45016271-4	chr7	45016207	45016407	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001008422)	promoter-TSS (NM_001008422)	-58.0	NM_001008422	233208.0	Mm.28298	NM_001008422	ENSMUSG00000038406	Scaf1	AI480556|SR-A1	SR-related CTD-associated factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-9984123-4	chr3	9984015	9984215	+	831.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28470.0	NM_001272097	16592.0	Mm.741	NM_010634	ENSMUSG00000027533	Fabp5	E-FABP|Fabpe|Klbp|PA-FABP|mal1	fatty acid binding protein 5, epidermal	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-23706430-4	chr17	23706330	23706530	+	880.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19906.0	NM_023058	268930.0	Mm.182193	NM_023058	ENSMUSG00000023908	Pkmyt1	6230424P17|AW209059|Myt1	protein kinase, membrane associated tyrosine/threonine 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-3509945-1	chr17	3509845	3510045	+	715.0	f1_c57bl6.idr	intron (NM_011878, intron 20 of 26)	intron (NM_011878, intron 20 of 26)	-22609.0	NM_001101560	621628.0	Mm.469914	NM_001101560	ENSMUSG00000091530	Cldn20	EG621628	claudin 20	protein-coding	0.394935643286698	1.22209199164385	0.415147251247022	0.407611036245879	0.708535590860424	1.23568616917454	0.417288592380242	1.01404928353892	1.01207988852465	0.570111172109444	1
Merged-chr4-126745739-2	chr4	126745639	126745839	+	867.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355412, intron 6 of 6)	intron (NM_001355412, intron 6 of 6)	6828.0	NM_001355413	26562.0	Mm.206206	NM_011986	ENSMUSG00000028833	Ncdn	AU042419|MMS10-AE|Ms10ae|mKIAA0607|norbin	neurochondrin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-45122522-4	chr9	45122457	45122657	+	924.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001014761, intron 1 of 3)	intron (NM_001014761, intron 1 of 3)	4681.0	NM_001014761	72821.0	Mm.229373	NM_001014761	ENSMUSG00000070304	Scn2b	2810451E09Rik|AI840361|Gm183	sodium channel, voltage-gated, type II, beta	protein-coding	1.78279760580913	2.11535922078524	1.68055543200929	2.16116917470375	1.27433403704815	1.58389179494664	1.82953776014328	1.32066825947503	-1.38262133083005	0.18930682343678	0.667555616405381
Merged-chr1-191333120-4	chr1	191333012	191333212	+	933.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025864, intron 2 of 7)	L1M2|LINE|L1	7147.0	NM_025864	66950.0	Mm.236300	NM_025864	ENSMUSG00000026627	Tmem206	2310028N02Rik|AI118576	transmembrane protein 206	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70786096-4	chr11	70786011	70786211	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21664.0	NM_177565	193043.0	Mm.40966	NM_177565	ENSMUSG00000043602	Zfp3	AI854635|B230309J24|Fnp-1|Zfp-3	zinc finger protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-105466967-4	chr11	105466866	105467066	+	956.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10231.0	NM_001039242	632687.0	Mm.121570	NM_172568	ENSMUSG00000078627	March10	4933417C16Rik|AV039223|Rnf190	membrane-associated ring finger (C3HC4) 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-108447609-5	chr6	108447395	108447595	+	843.5904539999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 44 of 61)	intron (NM_010585, intron 44 of 61)	-42248.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	0.843812498817271	0.707921779202602	1.36743320899866	0.683455785562291	1.35528599165762	1.77287938903375	0.697264933976927	1.44071900172669	1.80937246317176	0.223794461929853	0.715259977153536
Merged-chr4-150570042-4	chr4	150569923	150570123	+	918.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 11 of 22)	CpG	82151.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-144027693-2	chr3	144027593	144027793	+	842.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	174639.0	NM_001161770	16911.0	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47594327-4	chr17	47594217	47594417	+	950.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081635, intron 3 of 6)	intron (NM_001081635, intron 3 of 6)	850.0	NM_007632	12445.0	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64335263-2	chr5	64335218	64335418	+	825.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001310611, exon 19 of 22)	exon (NM_001310611, exon 19 of 22)	104961.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	1.26688813711562	1.67694057097262	1.61316500029841	0.850977704732359	1.4881775641601	1.28291107915749	0.864616621480289	1.34283323559205	-0.493339351288429	0.708642902384543	0.998431161219273
Merged-chr11-113748190-2	chr11	113748090	113748290	+	753.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163346, intron 1 of 1)	intron (NM_001163346, intron 1 of 1)	2970.0	NM_020006	56699.0	Mm.293378	NM_020006	ENSMUSG00000041598	Cdc42ep4	1500041M20Rik|Borg4|CEP4	CDC42 effector protein (Rho GTPase binding) 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-154963474-2	chr4	154963390	154963590	+	761.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001305804)	promoter-TSS (NM_001305804)	-633.0	NM_001305804	269614.0	Mm.30042	NM_172990	ENSMUSG00000029056	Pank4	D030031I12Rik|R75150	pantothenate kinase 4	protein-coding	1.10604293893276	1.5202668087958	0.688605489798835	1.59249009881907	0.988183034534881	1.41372221893518	0.691419757851452	0.680420824118622	-1.22979109424531	0.411114865542515	0.894256659801134
Merged-chr8-80739380-2	chr8	80739280	80739480	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053124)	promoter-TSS (NM_053124)	79.0	NM_053124	93762.0	Mm.246803	NM_053124	ENSMUSG00000031715	Smarca5	4933427E24Rik|D030040M08Rik|D330027N15Rik|MommeD4|Snf2h	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115606266-2	chr11	115606166	115606366	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025305, intron 4 of 4)	intron (NM_025305, intron 4 of 4)	2126.0	NM_025305	50529.0	Mm.193040	NM_025305	ENSMUSG00000046756	Mrps7	MRP-S7|Rpms7|S7mt	mitchondrial ribosomal protein S7	protein-coding	-0.286921867515665	-0.435170506044163	-0.440446126734009	-0.444546100182984	-0.450385408716783	0.578152678845814	-0.43927885637347	-0.253496081080542	2.98036013429473	0.220202512219403	1
Merged-chr8-68212248-4	chr8	68212160	68212360	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64268.0	NM_028182	72281.0	Mm.40974	NM_028182	ENSMUSG00000053886	Sh2d4a	2210402M20Rik|SH2A	SH2 domain containing 4A	protein-coding	2.47014406980955	1.46612465139134	2.21760851544357	2.77150717133422	2.29874989372274	2.15031894113308	2.69760999429512	2.86171045471498	0.453258328147048	0.598303781665646	0.972303230574462
Merged-chr17-5627441-2	chr17	5627341	5627541	+	846.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	MLT1A0|LTR|ERVL-MaLR	134841.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-53289375-3	chr6	53289280	53289480	+	803.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001327821, intron 1 of 10)	intron (NM_001327821, intron 1 of 10)	2077.0	NM_001327821	231991.0	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	2.89823581445514	2.36718684408551	2.2841931720531	3.87924794480158	3.07838669976245	2.18384373000046	3.07750340879848	3.3053772839462	-0.115163074621794	0.875937575245632	0.998431161219273
Merged-chr18-80161664-4	chr18	80161519	80161719	+	948.767822	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	-10137.0	NM_175028	240442.0	Mm.26594	NM_175028	ENSMUSG00000053950	Adnp2	8430420L05Rik|BC024969|Kiaa0863|Zfp508|mKIAA0863	ADNP homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-36746887-2	chr16	36746787	36746987	+	562.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER119|DNA|hAT-Charlie	38075.0	NM_001145899	57738.0	Mm.281804	NM_021301	ENSMUSG00000022899	Slc15a2	8430408C16Rik|C78862|Pept2	solute carrier family 15 (H+/peptide transporter), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-50724716-2	chr8	50724616	50724816	+	854.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR26D_MM|LTR|ERVK	356604.0	NR_046067	100039954.0	Mm.400419	NR_046067	ENSMUSG00000110281	Gm2516	-	predicted gene 2516	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-75092651-2	chr16	75092551	75092751	+	942.5	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001358492, exon 1 of 27)	5' UTR (NM_001358492, exon 1 of 27)	119.0	NM_001358491	268902.0	Mm.171736	NM_175549	ENSMUSG00000052516	Robo2	2600013A04Rik|9430089E08Rik|BB097918|D230004I22Rik|mKIAA1568	roundabout guidance receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-67515177-4	chr3	67515056	67515256	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164763, intron 1 of 5)	CpG	367.0	NM_001164763	109222.0	Mm.38002	NM_001164763	ENSMUSG00000049404	Rarres1	5430417P09Rik|AI662122	retinoic acid receptor responder (tazarotene induced) 1	protein-coding	-0.886101355436339	-1.00396555740196	-1.0149952784261	-0.729136405357512	-1.02076976304248	-1.00157537084445	-1.01249839135084	-0.724971213481921	-0.412084047333427	0.891480597011167	1
Merged-chr13-100108086-4	chr13	100108002	100108202	+	983.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011353)	promoter-TSS (NM_011353)	83.0	NM_011353	20365.0	Mm.286177	NM_011353	ENSMUSG00000021643	Serf1	4F5|Msmac1|m4F5	small EDRK-rich factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-150138193-2	chr5	150138093	150138293	+	797.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	119518.0	NM_001289566	140498.0	Mm.444643	NM_080468	ENSMUSG00000053368	Rxfp2	Gpr106|Great|Lgr8	relaxin/insulin-like family peptide receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47141002-6	chr17	47140958	47141158	+	797.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001097623, intron 1 of 19)	intron (NM_001097623, intron 1 of 19)	116.0	NM_001097623	224829.0	Mm.260989	NM_172622		Trerf1	9430096I18Rik|AI429294|B830015H24|RAPA|Trep-132|Trep132	transcriptional regulating factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-65604517-4	chr17	65604407	65604607	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355402, intron 1 of 6)	MTE2b|LTR|ERVL-MaLR	9048.0	NM_001355402	30960.0	Mm.266767	NM_013933	ENSMUSG00000024091	Vapa	33kDa|VAP33	vesicle-associated membrane protein, associated protein A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-103269610-4	chr11	103269524	103269724	+	837.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2223.0	NM_016896	53859.0	Mm.158981	NM_016896	ENSMUSG00000020941	Map3k14	Nik|aly	mitogen-activated protein kinase kinase kinase 14	protein-coding	-1.05877568042897	-1.03501312238488	-1.04817210678232	-1.05426068996071	-1.05810152525527	-1.03216151557194	-0.188696606725984	-1.05378786495764	3.16074139804981	0.330468818528456	1
Merged-chr2-133724517-2	chr2	133724417	133724617	+	551.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER91B|DNA|hAT-Tip100	159809.0	NR_037273	100526500.0		NR_037273	ENSMUSG00000093338	Mir3090	mmu-mir-3090	microRNA 3090	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-6492980-2	chr1	6492880	6493080	+	730.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001244693, intron 2 of 22)	intron (NM_001244693, intron 2 of 22)	5749.0	NM_001244692	240690.0	Mm.234612	NM_173868	ENSMUSG00000033740	St18	AV348974|Myt3|NZF-3|Nzf3|mKIAA0535	suppression of tumorigenicity 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88334548-2	chr3	88334448	88334648	+	784.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024246)	promoter-TSS (NM_024246)	-115.0	NM_024246	71913.0	Mm.34256	NM_024246	ENSMUSG00000001420	Tmem79	2310042N02Rik|2310074C17Rik|Matt|ma	transmembrane protein 79	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-19007098-2	chr10	19006998	19007198	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166402, intron 3 of 7)	intron (NM_001166402, intron 3 of 7)	4865.0	NM_001166402	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-56737366-2	chr5	56737266	56737466	+	550.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	980553.0	NR_015588	319216.0	Mm.332387	NR_015588	ENSMUSG00000097216	4932441J04Rik	-	RIKEN cDNA 4932441J04 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95216614-2	chr3	95216514	95216714	+	848.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_108026)	promoter-TSS (NR_108026)	-843.0	NR_108026	100504029.0	Mm.478537	NR_108026	ENSMUSG00000097167	Gm16740	-	predicted gene, 16740	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78899830-4	chr15	78899727	78899927	+	933.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001316686)	promoter-TSS (NM_001316686)	59.0	NM_009164	20401.0	Mm.4462	NM_009164	ENSMUSG00000022436	Sh3bp1	3BP-1	SH3-domain binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129544758-2	chr2	129544614	129544814	+	597.0	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-8112.0	NM_177653	228592.0	Mm.452175	NM_177653	ENSMUSG00000043727	F830045P16Rik	Sirpb3	RIKEN cDNA F830045P16 gene	protein-coding	2.53264744539934	1.12307599861349	2.76027164097672	1.69510210029151	2.18560225777585	1.1295761675339	2.17802391326528	1.07388089654993	-1.0299619259195	0.382839689075337	0.873853298598916
Merged-chr14-61968721-4	chr14	61968674	61968874	+	866.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-286401.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-107748488-2	chr13	107748391	107748591	+	594.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 5 of 14)	intron (NM_145456, intron 5 of 14)	61094.0	NR_045900	72257.0	Mm.234155	NR_045900	ENSMUSG00000102000	1700006H21Rik	-	RIKEN cDNA 1700006H21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-55383356-3	chr1	55383279	55383479	+	701.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19910.0	NM_029267	75388.0	Mm.483408	NM_029267	ENSMUSG00000025977	Boll	4930554P13Rik|4930597B14Rik	boule homolog, RNA binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-61393185-4	chr3	61393060	61393260	+	970.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	28653.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-43186806-4	chr5	43186702	43186902	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028417, intron 5 of 7)	intron (NR_028417, intron 5 of 7)	-46661.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-108692065-4	chr9	108691954	108692154	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008924)	promoter-TSS (NM_008924)	-89.0	NM_008924	19087.0	Mm.253102	NM_008924	ENSMUSG00000032601	Prkar2a	1110061A24Rik|AI317181|AI836829|RII(alpha)	protein kinase, cAMP dependent regulatory, type II alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-6557661-2	chr15	6557561	6557761	+	616.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22186.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-111666160-1	chr13	111666060	111666260	+	737.0	f1_c57bl6.idr	Intergenic	RLTR11B|LTR|ERVK	-20018.0	NM_172593	218613.0	Mm.31012	NM_172593	ENSMUSG00000032727	Mier3	5730509D14|AU015422|D130064H19Rik	MIER family member 3	protein-coding	2.90938751417839	1.00937439340294	0.978011951455591	2.70267597003907	1.68149492792824	1.01622941388434	1.26695569837443	2.1533955056496	-1.41657246946015	0.250583652655858	0.748509191602971
Merged-chr7-118382140-4	chr7	118382056	118382256	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362179, intron 7 of 7)	intron (NM_001362179, intron 7 of 7)	61404.0	NM_001362180	110058.0	Mm.156558	NM_138649	ENSMUSG00000058420	Syt17	Bk|sytXVII	synaptotagmin XVII	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-20168393-2	chr11	20168293	20168493	+	580.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33019.0	NM_008996	19324.0	Mm.271944	NM_008996	ENSMUSG00000020149	Rab1a	Gtbp|Rab-1|Rab1|Ypt1|mKIAA3012	RAB1A, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-69272592-2	chr8	69272482	69272682	+	901.583374	f0_balb.idr|f1_balb.idr	intron (NM_172491, intron 1 of 5)	intron (NM_172491, intron 1 of 5)	1502.0	NM_172491	211135.0	Mm.294970	NM_172491	ENSMUSG00000079038	D130040H23Rik	-	RIKEN cDNA D130040H23 gene	protein-coding	2.52771218008822	3.89434510997783	1.6797931698382	2.53769200607876	4.89540847795462	4.20128612216474	4.96073828148042	4.16487790546511	2.41569242791964	4.7870635464685e-05	0.00167613883326363
Merged-chr14-26440794-2	chr14	26440694	26440894	+	552.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310445, intron 14 of 22)	intron (NM_001310445, intron 14 of 22)	83247.0	NR_038005	71106.0	Mm.158564	NR_038005	ENSMUSG00000021874	4933413J09Rik	GCSE	RIKEN cDNA 4933413J09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-114869538-3	chr14	114869434	114869634	+	974.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37569.0	NR_045661	75822.0	Mm.410813	NR_045661	ENSMUSG00000115320	4930524C18Rik	-	RIKEN cDNA 4930524C18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-60608970-4	chr19	60608875	60609075	+	963.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger8|DNA|TcMar-Tigger	-27952.0	NM_001172096	78832.0	Mm.259026	NM_030197	ENSMUSG00000033417	Cacul1	2700078E11Rik|2810417M16Rik|9830127L17Rik|AI450346|D130033C15Rik	CDK2 associated, cullin domain 1	protein-coding	2.42457429636704	2.42304456717225	1.31859440738045	2.03343608804758	2.06672837649858	2.82947076856566	1.7834934814596	2.28553709897962	0.40689912578505	0.66583272910645	0.992380258859526
Merged-chr3-84259813-4	chr3	84259717	84259917	+	986.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271727)	promoter-TSS (NM_001271727)	-38.0	NM_001271727	80890.0	Mm.44876	NM_030706	ENSMUSG00000027993	Trim2	mKIAA0517|narf	tripartite motif-containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-40320645-2	chr9	40320545	40320745	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001357622, exon 1 of 17)	exon (NM_001357622, exon 1 of 17)	678.0	NM_001357622	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-133776438-1	chr7	133776338	133776538	+	766.0	f0_balb.idr	promoter-TSS (NM_025850)	promoter-TSS (NM_025850)	365.0	NM_001286032	101437.0	Mm.199223	NM_133941	ENSMUSG00000030986	Dhx32	3110079L04Rik|4732469F02Rik|AA408140|Ddx32|muDDX32	DEAH (Asp-Glu-Ala-His) box polypeptide 32	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-122032190-1	chr2	122032090	122032290	+	747.5	f0_c57.idr	intron (NM_001256055, intron 2 of 7)	intron (NM_001256055, intron 2 of 7)	3607.0	NM_001256055	100042807.0	Mm.329403	NM_001256055	ENSMUSG00000043424	Eif3j2	Eif3j-2|Gm9781|eIF3 p35|eIF3j-B	eukaryotic translation initiation factor 3, subunit J2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-74968377-4	chr15	74968270	74968470	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13264.0	NM_001164040	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	2.89996556370055	1.54818644891014	4.21528020898473	3.06823682720287	2.92610861209284	1.56169056256077	3.9839474060908	2.88612283654557	-0.238722312677761	0.867185636571882	0.998431161219273
Merged-chr13-60479957-4	chr13	60479866	60480066	+	945.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-121981.0	NM_001285917	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-136624856-4	chr1	136624743	136624943	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177643)	promoter-TSS (NM_177643)	-58.0	NM_177643	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-164769762-4	chr2	164769642	164769842	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026785)	promoter-TSS (NM_026785)	-187.0	NM_026785	68612.0	Mm.89830	NM_026785	ENSMUSG00000001403	Ube2c	1110015A16Rik|D2Ertd695e	ubiquitin-conjugating enzyme E2C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-25770065-2	chr14	25769965	25770165	+	696.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1209.0	NM_001101433	71918.0	Mm.41904	NM_001101433	ENSMUSG00000055538	Zcchc24	2310047A01Rik	zinc finger, CCHC domain containing 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-99936932-3	chr4	99936819	99937019	+	634.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028132, intron 1 of 10)	intron (NM_028132, intron 1 of 10)	7468.0	NM_028132	72157.0	Mm.217764	NM_028132	ENSMUSG00000025791	Pgm2	2610020G18Rik|AA407108|AI098105|Pgm-2|Pgm1	phosphoglucomutase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-91251762-3	chr15	91251676	91251876	+	633.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-59769.0	NM_001358967	26874.0	Mm.295456	NM_011994	ENSMUSG00000055782	Abcd2	ABC39|ALDL1|ALDR|ALDRP	ATP-binding cassette, sub-family D (ALD), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-86465345-2	chr1	86465245	86465445	+	743.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(A)n|Simple_repeat|Simple_repeat	39016.0	NM_027966	71863.0	Mm.179627	NM_027966	ENSMUSG00000036574	Tex44	1700019O17Rik	testis expressed 44	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46861284-3	chr8	46861150	46861350	+	753.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	121505.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-92801800-4	chr16	92801692	92801892	+	931.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111022, intron 2 of 6)	intron (NM_001111022, intron 2 of 6)	24282.0	NM_001111021	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-121441230-3	chr1	121441136	121441336	+	933.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029955, intron 3 of 23)	intron (NM_029955, intron 3 of 23)	10169.0	NM_029955	70829.0	Mm.25788	NM_027567	ENSMUSG00000026339	Ccdc93	4633402D15Rik|9230102M16Rik	coiled-coil domain containing 93	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-32821542-2	chr12	32821485	32821685	+	943.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021524, intron 1 of 10)	intron (NM_021524, intron 1 of 10)	1250.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	2.33737367629502	2.74802098815698	1.92779037676476	2.67796099849252	1.9624609967461	2.8753944354203	1.94284906603719	3.44036962631926	0.527087570472298	0.525411165780334	0.948340152465298
Merged-chr1-191283221-2	chr1	191283115	191283315	+	834.125	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34903.0	NM_025424	66208.0	Mm.46444	NM_025424	ENSMUSG00000037499	Nenf	1110060M21Rik|SCIRP10|Spuf	neuron derived neurotrophic factor	protein-coding	1.38460100573941	0.78058956994358	1.41036149240688	0.757740891670435	1.48843446789493	0.783452660416893	1.149189085338	1.66671293563397	0.75631881707834	0.603118758084786	0.973565005745828
Merged-chr1-180423478-4	chr1	180423430	180423630	+	983.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001081175, exon 8 of 8)	3' UTR (NM_001081175, exon 8 of 8)	59974.0	NM_001081227	381310.0	Mm.44791	NM_001081227	ENSMUSG00000053963	Stum	6330403A02Rik|Gm10001|R75555	mechanosensory transduction mediator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-65607705-4	chr17	65607576	65607776	+	903.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355402, intron 1 of 6)	intron (NM_001355402, intron 1 of 6)	5879.0	NM_001355402	30960.0	Mm.266767	NM_013933	ENSMUSG00000024091	Vapa	33kDa|VAP33	vesicle-associated membrane protein, associated protein A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65583242-4	chr9	65583155	65583355	+	994.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3168.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-23599220-4	chr17	23599134	23599334	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_011747, exon 1 of 6)	5' UTR (NM_011747, exon 1 of 6)	253.0	NM_011747	22654.0	Mm.40326	NM_011747	ENSMUSG00000062012	Zfp13	AI835008|Krox-8|Zfp-13	zinc finger protein 13	protein-coding	4.30793799946444	4.73279585046787	4.50086129272566	3.94751843803098	4.11545821712683	3.92344962539197	4.08932586681441	3.96738084722112	-0.490500018635064	0.238122399402379	0.734697209333897
Merged-chr11-70236846-4	chr11	70236774	70236974	+	871.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177606, intron 2 of 3)	intron (NM_001177606, intron 2 of 3)	1040.0	NM_001177601	104457.0	Mm.30016	NM_026757	ENSMUSG00000020831	0610010K14Rik	1110020A23Rik|AL033328|AU045833|Bap18	RIKEN cDNA 0610010K14 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-4797009-3	chr6	4796926	4797126	+	825.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49720.0	NM_130877	170676.0	Mm.320575	NM_130877	ENSMUSG00000092035	Peg10	AA407948|Edr|HB-1|MEF3L|Mar2|Mart2|MyEF-3|Rtl2	paternally expressed 10	protein-coding	0.224961134311552	0.922840303451514	1.16621126579977	0.235735863216485	0.226573383932086	0.471024506046723	0.613033774909925	0.236861279753631	-1.87320731565716	0.33094381792238	1
Merged-chr7-92746344-2	chr7	92746244	92746444	+	986.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029494, intron 1 of 4)	intron (NM_029494, intron 1 of 4)	4630.0	NM_029494	75985.0	Mm.323004	NM_029494	ENSMUSG00000030643	Rab30	5033421K01Rik|AI323892|Rsb30	RAB30, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-44458743-4	chr10	44458648	44458848	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007548)	promoter-TSS (NM_007548)	0.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-108836830-2	chr12	108836730	108836930	+	627.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181328)	promoter-TSS (NM_181328)	-143.0	NR_029773	723946.0		NR_029773	ENSMUSG00000065429	Mir345	Mirn345|mir-345|mmu-mir-345	microRNA 345	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-12289381-4	chr12	12289268	12289468	+	914.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029758, intron 2 of 12)	intron (NM_029758, intron 2 of 12)	27229.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-23747028-4	chr17	23746936	23747136	+	935.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1207.0	NM_028416	73016.0	Mm.221319	NM_028416	ENSMUSG00000040680	Kremen2	2900054E04Rik|Krm2	kringle containing transmembrane protein 2	protein-coding	3.48787093673775	4.03614975852675	3.62385903788925	3.73975338002225	3.29171125711498	4.18701645214524	3.47971336228256	3.61795583227614	-0.0759165636287282	0.880739133878163	0.998431161219273
Merged-chr8-84665434-2	chr8	84665351	84665551	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2599.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	1.53872197268413	2.48366827808259	2.50583764142686	2.22296226064934	2.12991647844329	2.61100880636793	2.41975459197708	2.10832815621339	0.210435156127701	0.808055773784431	0.998431161219273
Merged-chr6-115507572-4	chr6	115507475	115507675	+	937.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-37129.0	NM_199033	381802.0	Mm.291208	NM_199033	ENSMUSG00000042389	Tsen2	AU067695	tRNA splicing endonuclease subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-20185716-3	chr13	20185609	20185809	+	621.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 2 of 21)	intron (NM_080288, intron 2 of 21)	95202.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-31112994-2	chr7	31112894	31113094	+	999.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110252, intron 2 of 13)	BC1_Mm|scRNA|scRNA	-1997.0	NM_001276269	15451.0	Mm.19182	NM_008281	ENSMUSG00000001249	Hpn	Hlb320	hepsin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100530899-4	chr7	100530782	100530982	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6218.0	NM_183270	68185.0	Mm.228995	NM_183270	ENSMUSG00000044881	Coa4	5330414O08Rik|AI115477|AW047259|Chchd8|E2ig2	cytochrome c oxidase assembly factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-104591371-4	chr8	104591267	104591467	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024606)	promoter-TSS (NM_001024606)	-101.0	NM_001024606	382051.0	Mm.290750	NM_001024606	ENSMUSG00000048371	Pdp2	4833426J09Rik|Gm1705|mKIAA1348	pyruvate dehyrogenase phosphatase catalytic subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-137821092-4	chr3	137820996	137821196	+	792.625	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37481.0	NR_105801	102466638.0		NR_105801	ENSMUSG00000099011	Mir6380	Gm27356|mmu-mir-6380	microRNA 6380	ncRNA	-1.26158838883041	-1.23491885943196	-0.932285682414493	-1.253498770181	-0.991415215585255	-1.23270831899588	-1.24281036665307	-1.25199890057848	-0.196493622954895	0.95427149369431	1
Merged-chr6-142164465-2	chr6	142164365	142164565	+	547.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023718, intron 1 of 14)	MTD|LTR|ERVL-MaLR	21684.0	NM_023718	28254.0	Mm.38953	NM_023718	ENSMUSG00000079262	Slco1a6	4930422F19Rik|AI790453|Oatp-5|Oatp5|Slc21a13	solute carrier organic anion transporter family, member 1a6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-24954004-2	chr6	24953904	24954104	+	571.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177013, exon 1 of 1)	3' UTR (NM_177013, exon 1 of 1)	2121.0	NM_177013	319832.0	Mm.127446	NM_177013	ENSMUSG00000048022	Tmem229a	6332401O19Rik	transmembrane protein 229A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-154074267-4	chr1	154074177	154074377	+	999.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-126910.0	NM_001204908	100503355.0	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	Gm10178|Gm203	zinc finger protein 648	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-61363276-3	chr3	61363153	61363353	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1254.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27725113-4	chr2	27724955	27725155	+	821.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290482, intron 1 of 9)	intron (NM_001290482, intron 1 of 9)	14472.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-116071121-2	chr6	116071021	116071221	+	812.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177412, intron 3 of 5)	intron (NM_177412, intron 3 of 5)	-76116.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-68276525-4	chr10	68276425	68276625	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023598, intron 2 of 9)	intron (NM_023598, intron 2 of 9)	2201.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	4.44608079120448	4.50087654517613	4.82181869397749	4.34766704583077	3.95046426145321	4.96053482431939	4.49773482627466	4.08517365879802	-0.150686808005102	0.70696680461499	0.998431161219273
Merged-chr1-61042903-1	chr1	61042803	61043003	+	998.0	f0_balb.idr	Intergenic	MLT1K-int|LTR|ERVL-MaLR	64989.0	NM_017480	54167.0	Mm.42044	NM_017480	ENSMUSG00000026009	Icos	AILIM|CCLP|CRP-1|H4|Ly115	inducible T cell co-stimulator	protein-coding	0.497393424965731	0.518006284579241	0.511212238647843	0.505997362591494	1.20315399669494	0.519543104531215	1.07679754685858	1.39150276602635	4.70031378640408	0.0101242911922813	0.109788677888265
Merged-chr10-95525141-4	chr10	95525027	95525227	+	952.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080560, intron 1 of 3)	intron (NM_080560, intron 1 of 3)	9965.0	NM_080560	93765.0	Mm.371667	NM_080560	ENSMUSG00000074781	Ube2n	1500026J17Rik|AL022654|BB101821|UBC13	ubiquitin-conjugating enzyme E2N	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-42635871-2	chr10	42635771	42635971	+	673.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-43045.0	NM_172416	14628.0	Mm.46636	NM_172416	ENSMUSG00000038280	Ostm1	1200002H13Rik|HSPC019|gl	osteopetrosis associated transmembrane protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-144585103-6	chr3	144584981	144585181	+	939.444458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053102, intron 2 of 4)	intron (NM_053102, intron 2 of 4)	14654.0	NM_053102	93684.0	Mm.29812	NM_053102	ENSMUSG00000037072	Selenof	9430015P09Rik|Sep15	selenoprotein F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47437064-3	chr17	47436975	47437175	+	724.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145489, intron 1 of 4)	intron (NM_145489, intron 1 of 4)	300.0	NM_029296	75462.0	Mm.46129	NM_029296	ENSMUSG00000047150	1700001C19Rik	-	RIKEN cDNA 1700001C19 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-122622594-1	chr3	122622494	122622694	+	927.0	f1_balb.idr	Intergenic	RSINE1|SINE|B4	-2880.0	NM_001114665	214459.0	Mm.209491	NM_153118	ENSMUSG00000039735	Fnbp1l	2610318I01Rik|AW548221|TOCA1|toca-1	formin binding protein 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-84781587-2	chr18	84781487	84781687	+	688.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37520.0	NR_155706	102641800.0		NR_155706		Gm38576	-	predicted gene, 38576	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-27280583-4	chr3	27280496	27280696	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36481.0	NM_009425	22035.0	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-132707865-3	chr7	132707770	132707970	+	824.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	69046.0	NM_001347630	77938.0	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102438149-4	chr12	102438058	102438258	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011175, intron 1 of 13)	intron (NM_011175, intron 1 of 13)	1655.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-42860575-3	chr17	42860478	42860678	+	720.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009847, intron 1 of 17)	ORR1E|LTR|ERVL-MaLR	15846.0	NM_009847	12488.0	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding	1.1313341029409	1.5062740742577	2.71604694746684	2.18945072084502	1.55450111772747	1.74150159594861	2.48437491994172	2.65053263586258	0.349411641000695	0.738428826516721	0.998431161219273
Merged-chr6-71980258-4	chr6	71980178	71980378	+	994.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009088)	TTS (NM_009088)	62250.0	NR_046180	330350.0	Mm.246787	NR_046180	ENSMUSG00000108356	9130221F21Rik	9130221F21	RIKEN cDNA 9130221F21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33961682-2	chr16	33961582	33961782	+	579.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_009471, exon 3 of 6)	exon (NM_009471, exon 3 of 6)	5356.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-105782183-2	chr12	105782110	105782310	+	589.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_030187, exon 18 of 18)	3' UTR (NM_030187, exon 18 of 18)	-2487.0	NM_011112	18789.0	Mm.255877	NM_011112	ENSMUSG00000021111	Papola	Pap|PapIII|Plap	poly (A) polymerase alpha	protein-coding	0.299722491574271	0.32520455423019	0.316930709830661	1.24736707336568	0.600469287276897	0.866520101824569	0.318761506884135	0.779666924226172	0.0961523760764026	0.958783227032474	1
Merged-chr10-70035865-1	chr10	70035765	70035965	+	544.0	f0_c57.idr	Intergenic	MTD|LTR|ERVL-MaLR	-61256.0	NM_001111121	76551.0	Mm.281741	NM_001111121	ENSMUSG00000048701	Ccdc6	2810012H18Rik|AA536681|AA960498|AW061011	coiled-coil domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-71993942-1	chr13	71993842	71994042	+	575.0	f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-30219.0	NM_010573	16371.0	Mm.316056	NM_010573	ENSMUSG00000060969	Irx1	-	Iroquois homeobox 1	protein-coding	0.629470387251118	1.46703062577895	0.665969027849311	1.67769050543246	1.15176986952482	0.686675859268462	0.669751560300236	2.07540006667626	0.322657823468644	0.835969261541705	0.998431161219273
Merged-chr7-80998090-7	chr7	80998008	80998208	+	963.619019	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178707, intron 1 of 9)	intron (NM_178707, intron 1 of 9)	4424.0	NM_178707	233410.0	Mm.29525	NM_178707	ENSMUSG00000005621	Zfp592	A730014M16Rik|Znf592	zinc finger protein 592	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-64733748-4	chr8	64733655	64733855	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025436)	promoter-TSS (NM_025436)	-177.0	NM_025436	66234.0	Mm.30119	NM_025436	ENSMUSG00000031604	Msmo1	1500001G16Rik|C78600|DESP4|ERG25|Sc4mol	methylsterol monoxygenase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-99340632-1	chr5	99340532	99340732	+	655.5	f0_balb.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-87705.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-96513200-2	chr9	96513100	96513300	+	667.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	-34525.0	NM_001311135	19823.0	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-20430180-2	chr16	20430080	20430280	+	811.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR17|LTR|ERVK	-3786.0	NM_176839	27416.0	Mm.20845	NM_013790	ENSMUSG00000022822	Abcc5	2900011L11Rik|AI132311|Abcc5a|Abcc5b|Mrp5	ATP-binding cassette, sub-family C (CFTR/MRP), member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-46525115-4	chr18	46525017	46525217	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173423, intron 1 of 2)	intron (NM_173423, intron 1 of 2)	854.0	NM_173423	240263.0	Mm.38249	NM_173423	ENSMUSG00000033319	Fem1c	2610312A07Rik|3632443A22Rik|AI646567	fem-1 homolog c (C.elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-68134822-3	chr15	68134731	68134931	+	994.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152182, intron 9 of 13)	intron (NR_152182, intron 9 of 13)	124025.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	3.41815491325123	3.36460327150028	3.56106870313819	3.39730676057559	3.32209379653352	2.30066429742404	2.86165205888628	2.88802518786664	-0.894762573776057	0.14145309258432	0.587115153883766
Merged-chr2-166430140-4	chr2	166430054	166430254	+	919.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17297.0	NR_015558	319684.0	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-86817761-4	chr12	86817649	86817849	+	981.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	67065.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-57902879-2	chr4	57902779	57902979	+	942.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13385.0	NM_178727	242484.0	Mm.23214	NM_178727	ENSMUSG00000052117	D630039A03Rik	-	RIKEN cDNA D630039A03 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101033530-1	chr7	101033430	101033630	+	749.5	f0_balb.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-21477.0	NM_001302346	18442.0	Mm.3000	NM_008773	ENSMUSG00000032860	P2ry2	P2U1|P2Y2	purinergic receptor P2Y, G-protein coupled 2	protein-coding	0.311474276964149	0.335513284738503	0.327688986561388	0.321619120659642	0.917106891245593	1.1033134397882	0.817859122455521	0.649339836140062	4.40296393269262	0.0154618661431384	1
Merged-chr2-3754030-2	chr2	3753930	3754130	+	934.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025626, intron 1 of 3)	intron (NM_025626, intron 1 of 3)	40572.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-42753829-3	chr19	42753732	42753932	+	969.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C2|LTR|ERVK	-1057.0	NM_029011	74580.0	Mm.329858	NM_029011	ENSMUSG00000060224	Pyroxd2	3830409H07Rik|4833409A17Rik	pyridine nucleotide-disulphide oxidoreductase domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-57112390-2	chr2	57112290	57112490	+	623.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_013613, exon 3 of 8)	exon (NM_013613, exon 3 of 8)	2648.0	NM_013613	18227.0	Mm.3507	NM_013613	ENSMUSG00000026826	Nr4a2	HZF-3|NOT|Nurr1|RNR-1|TINOR|TINUR	nuclear receptor subfamily 4, group A, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-54972493-4	chr6	54972390	54972590	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001171007)	promoter-TSS (NM_001171007)	122.0	NM_172729	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	2.62672026662652	2.49818539688217	3.68063572308201	2.19729756103839	2.35053598860294	2.88099880608539	1.41432847608852	2.20933173671785	-1.11985795730506	0.189066812371063	0.667555616405381
Merged-chr6-97394692-4	chr6	97394594	97394794	+	986.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 6 of 23)	L1MEc|LINE|L1	64592.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-113006517-2	chr5	113006417	113006617	+	788.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285806, intron 1 of 20)	intron (NM_001285806, intron 1 of 20)	9021.0	NM_001285806	320129.0	Mm.285619	NM_177078	ENSMUSG00000042249	Grk3	4833444A01Rik|AI851927|AW551196|Adrbk-2|Adrbk2|Bark-2	G protein-coupled receptor kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-126468007-3	chr2	126467898	126468098	+	885.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359975, intron 3 of 27)	intron (NM_001359975, intron 3 of 27)	23555.0	NM_001080944	241633.0	Mm.222235	NM_001080944	ENSMUSG00000060131	Atp8b4	Im	ATPase, class I, type 8B, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-66519010-4	chr17	66518898	66519098	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024448, intron 1 of 5)	intron (NM_024448, intron 1 of 5)	672.0	NM_024448	19328.0	Mm.248313	NM_024448	ENSMUSG00000023460	Rab12	2900054P15Rik|AW555448|C77700	RAB12, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91508228-4	chr2	91508077	91508277	+	776.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172668, intron 36 of 37)	MLT1F2|LTR|ERVL-MaLR	-18585.0	NM_001165989	75786.0	Mm.168478	NM_029437	ENSMUSG00000040549	Ckap5	3110043H24Rik|4930432B04Rik|D730027C18Rik|T25636|mKIAA0097	cytoskeleton associated protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10603368-2	chr19	10603268	10603468	+	545.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145496, intron 1 of 16)	MIRb|SINE|MIR	890.0	NM_145496	225913.0	Mm.374868	NM_145496	ENSMUSG00000034371	Tkfc	BC021917|Dak	triokinase, FMN cyclase	protein-coding	0.724803574950821	0.284822193624173	0.278673966581667	0.791382354656327	0.734870175876358	0.286209384817046	0.729486392704431	0.274763803150176	-0.105777983915508	0.956346351093509	1
Merged-chr16-21590981-4	chr16	21590864	21591064	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081366, intron 44 of 46)	intron (NM_001081366, intron 44 of 46)	103701.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-135284047-4	chr1	135283947	135284147	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145417)	promoter-TSS (NM_145417)	37.0	NM_145417	215615.0	Mm.291048	NM_145417	ENSMUSG00000041926	Rnpep	-	arginyl aminopeptidase (aminopeptidase B)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-112605397-2	chr12	112605297	112605497	+	856.3333130000001	f1_balb.idr|f1_c57bl6.idr	exon (NM_198411, exon 9 of 23)	exon (NM_198411, exon 9 of 23)	-14650.0	NM_007421	11565.0	Mm.3440	NM_007421	ENSMUSG00000011148	Adssl1	AI528595|Adss|Adss1	adenylosuccinate synthetase like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-150851465-4	chr2	150851352	150851552	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151505, intron 2 of 12)	intron (NR_151505, intron 2 of 12)	-8882.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-121593722-2	chr8	121593622	121593822	+	752.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_026160, intron 2 of 3)	intron (NM_026160, intron 2 of 3)	3254.0	NM_026160	67443.0	Mm.28357	NM_026160	ENSMUSG00000031812	Map1lc3b	1010001C15Rik|Atg8|LC3b|Map1lc3	microtubule-associated protein 1 light chain 3 beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-82698494-2	chr10	82698394	82698594	+	627.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081218)	promoter-TSS (NM_001081218)	-513.0	NM_001081218	67933.0	Mm.127405	NM_026462	ENSMUSG00000020246	Hcfc2	1700129L13Rik|AU019838|fkls	host cell factor C2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-90223239-2	chr9	90223139	90223339	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 7 of 12)	intron (NM_194334, intron 7 of 12)	47530.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-85422552-2	chr14	85422452	85422652	+	552.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A4-int|LTR|ERVL-MaLR	-823418.0	NR_040457	75155.0	Mm.399239	NR_040457	ENSMUSG00000115271	4930529K09Rik	4930507G21Rik	RIKEN cDNA 4930529K09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-123477931-4	chr8	123477853	123478053	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_054070)	promoter-TSS (NM_054070)	91.0	NR_028260	114896.0	Mm.287475	NM_054070	ENSMUSG00000031967	Afg3l1	1700047G05Rik|3110061K15Rik	AFG3-like AAA ATPase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-46507446-4	chr4	46507321	46507521	+	997.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029077, exon 6 of 6)	exon (NM_029077, exon 6 of 6)	18092.0	NM_053179	94181.0	Mm.249349	NM_053179	ENSMUSG00000028334	Nans	4632418E04Rik|BB056474|Sas	N-acetylneuraminic acid synthase (sialic acid synthase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-57962721-4	chr11	57962600	57962800	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46364.0	NM_028451	73158.0	Mm.248843	NM_028451	ENSMUSG00000037331	Larp1	1810024J12Rik|3110040D16Rik|Larp|mKIAA0731	La ribonucleoprotein domain family, member 1	protein-coding	5.33693814348639	4.95622675063909	5.12665896628839	5.03306598926893	5.58907312801302	4.98986843857194	5.81143502966819	5.59815820665988	0.471157243882079	0.111310217373285	0.521828942224762
Merged-chr7-28435835-4	chr7	28435759	28435959	+	809.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175021, intron 1 of 12)	CpG	332.0	NM_175021	233033.0	Mm.54120	NM_175021	ENSMUSG00000109336	Samd4b	BC042901	sterile alpha motif domain containing 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-25326141-3	chr12	25326084	25326284	+	706.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	197010.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	0.783740396901469	0.236821887242588	0.232182417668608	0.69950269499681	0.794291818794865	0.237874327641892	0.233201548257817	0.229253387982237	-0.777543940363001	0.714661191833894	1
Merged-chr2-152669459-4	chr2	152669398	152669598	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159553)	promoter-TSS (NM_001159553)	37.0	NM_001159552	14950.0	Mm.277327	NM_010376	ENSMUSG00000019188	H13	1200006O09Rik|4930443L17Rik|5031424B04Rik|AV020344|H-13|Hm13|PSL3|Spp	histocompatibility 13	protein-coding	1.57310788022314	1.36714605714288	1.91336961945088	1.76324071292196	1.58696994844858	0.957919107765676	0.942199970315961	1.29487435915487	-1.61455247866944	0.197416431041738	0.679718702856214
Merged-chr2-160348285-4	chr2	160348183	160348383	+	971.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18782.0	NM_010658	16658.0	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-111924498-2	chr10	111924398	111924598	+	904.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TTTG)n|Simple_repeat|Simple_repeat	-48197.0	NM_178610	52705.0	Mm.34606	NM_178610	ENSMUSG00000063334	Krr1	2610511F02Rik|AI255219|AI428520|D10Ertd773e|Hrb2	KRR1, small subunit (SSU) processome component, homolog (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-109596848-4	chr5	109596735	109596935	+	771.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37842.0	NM_001310694	57914.0	Mm.35771	NM_016715	ENSMUSG00000033467	Crlf2	CRLM2|Ly114|Tpte2|Tslpr	cytokine receptor-like factor 2	protein-coding	0.143731394611725	0.655678546236014	0.72563695219584	0.151553476517572	0.14489536148746	0.163738980519667	0.73680963127423	0.319650064111416	-0.544198300297547	0.78727394393797	1
Merged-chr13-81225209-4	chr13	81225100	81225300	+	959.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 85 of 89)	intron (NM_054053, intron 85 of 89)	261126.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-104272336-4	chr9	104272231	104272431	+	798.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9401.0	NM_001163026	235567.0	Mm.217256	NM_001163026	ENSMUSG00000032560	Dnajc13	D030002L11Rik|Gm1124|RME-8|Rme8|mKIAA0678	DnaJ heat shock protein family (Hsp40) member C13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-114874180-3	chr7	114874045	114874245	+	884.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74505.0	NR_040317	101786.0	Mm.395157	NR_040317	ENSMUSG00000108379	A730082K24Rik	AU044236	RIKEN cDNA A730082K24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-166381610-2	chr1	166381510	166381710	+	595.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030245, intron 1 of 7)	intron (NM_030245, intron 1 of 7)	2443.0	NM_030245	27878.0	Mm.100665	NM_030245	ENSMUSG00000026563	Tada1	2900026B15Rik|D1Ertd251e|Staf42|Tada1l	transcriptional adaptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-94637412-2	chr16	94637312	94637512	+	741.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113389, intron 2 of 11)	intron (NM_001113389, intron 2 of 11)	25993.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-70420695-4	chr4	70420610	70420810	+	989.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10275.0	NM_145990	214444.0	Mm.370777	NM_145990	ENSMUSG00000039298	Cdk5rap2	2900018K03Rik|an|mKIAA1633	CDK5 regulatory subunit associated protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-160906323-4	chr1	160906238	160906438	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024952)	promoter-TSS (NM_001024952)	-73.0	NM_001024952	381305.0	Mm.329667	NM_001024952	ENSMUSG00000040423	Rc3h1	5730557L09Rik|Gm551|N28103|mKIAA2025	RING CCCH (C3H) domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-132022861-2	chr2	132022761	132022961	+	773.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175445, intron 1 of 10)	B1_Mur4|SINE|Alu	7127.0	NM_175445	215653.0	Mm.204737	NM_175445	ENSMUSG00000027339	Rassf2	3830431H01Rik|9030412M04Rik|AI852669|AW495050	Ras association (RalGDS/AF-6) domain family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-54464780-3	chr11	54464688	54464888	+	926.177795	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173753, intron 1 of 17)	intron (NM_173753, intron 1 of 17)	26609.0	NM_173753	216742.0	Mm.34087	NM_173753	ENSMUSG00000035992	Fnip1	A730024A03Rik|AI838773|AW557298	folliculin interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120071989-2	chr8	120071889	120072089	+	943.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29483.0	NM_133967	102193.0	Mm.240076	NM_133967	ENSMUSG00000031823	Zdhhc7	AL024087|Gramp2	zinc finger, DHHC domain containing 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-3006852-4	chr9	3006758	3006958	+	829.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GSAT_MM|Satellite|Satellite	31885.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-104106662-2	chr8	104106562	104106762	+	718.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_131138)	promoter-TSS (NR_131138)	-789.0	NR_131138	546096.0	Mm.252264	NR_131138	ENSMUSG00000110053	Gm29682	Gm45664	predicted gene, 29682	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-35105504-4	chr4	35105394	35105594	+	872.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178061, intron 1 of 3)	intron (NM_178061, intron 1 of 3)	-46561.0	NM_199157	387510.0	Mm.386929	NM_199157	ENSMUSG00000042993	Ifnk	-	interferon kappa	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-101694791-3	chr13	101694676	101694876	+	908.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077495, intron 7 of 15)	intron (NM_001077495, intron 7 of 15)	-2146.0	NM_001024955	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-153565726-1	chr3	153565626	153565826	+	723.0	f0_balb.idr	intron (NM_011372, intron 1 of 4)	intron (NM_011372, intron 1 of 4)	159407.0	NM_011372	20447.0	Mm.296453	NM_011372	ENSMUSG00000052544	St6galnac3	Siat7c	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-108971565-3	chr8	108971458	108971658	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	34698.0	NR_037295	100526511.0		NR_037295	ENSMUSG00000093241	Mir3108	mir-3108|mmu-mir-3108	microRNA 3108	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-111117170-1	chr9	111117070	111117270	+	591.0	f1_balb.idr	promoter-TSS (NM_001164838)	promoter-TSS (NM_001164838)	-941.0	NM_027742	71268.0	Mm.302287	NM_027742	ENSMUSG00000032497	Lrrfip2	5133400F20Rik|AI850587	leucine rich repeat (in FLII) interacting protein 2	protein-coding	0.239455488191706	0.266818112671061	0.257968303821994	0.251066075902412	0.241195151390749	0.966377797868728	1.12495801505478	0.970066129539959	4.47890982097599	0.0211481695090843	1
Merged-chr13-95374179-4	chr13	95374029	95374229	+	671.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025630, intron 1 of 13)	intron (NM_025630, intron 1 of 13)	1228.0	NM_025630	66549.0	Mm.36785	NM_025630	ENSMUSG00000021681	Aggf1	2010009L17Rik|2310029P06Rik|AW112072|Peg3|VG5Q	angiogenic factor with G patch and FHA domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-68472988-4	chr10	68472907	68473107	+	987.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028491, intron 5 of 7)	intron (NM_028491, intron 5 of 7)	68868.0	NM_028491	73287.0	Mm.141830	NM_028491	ENSMUSG00000019945	Cabcoco1	1700040L02Rik	ciliary associated calcium binding coiled-coil 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-67797742-2	chr18	67797653	67797853	+	802.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045376, intron 1 of 3)	RMER4B|LTR|ERVK	2190.0	NR_045376	75286.0	Mm.307315	NR_045376		4930549G23Rik	-	RIKEN cDNA 4930549G23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19119230-2	chr7	19119130	19119330	+	738.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175530)	promoter-TSS (NM_175530)	-629.0	NM_175530	243867.0	Mm.230830	NM_175530	ENSMUSG00000050428	Fbxo46	20D7-FC4|4932704E22Rik|Fbxo34l	F-box protein 46	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-31542743-2	chr15	31542643	31542843	+	639.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER12|LTR|ERVK	-11706.0	NM_172606	223455.0	Mm.272185	NM_172606	ENSMUSG00000039100	March6	3830408G03|F830029L24Rik|mKIAA0597	membrane-associated ring finger (C3HC4) 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-32737006-1	chr5	32736906	32737106	+	615.0	f1_balb.idr	3' UTR (NM_177298, exon 8 of 8)	3' UTR (NM_177298, exon 8 of 8)	9336.0	NM_001347332	320951.0	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	1.95848744129477	0.954586770960626	0.935956590288199	0.921224764879223	1.90047157823837	1.96523826026257	1.65913662400429	1.47082908955182	1.48553822053753	0.256830974940926	0.755701651669989
Merged-chr6-92422433-2	chr6	92422333	92422533	+	802.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001134460, exon 4 of 8)	exon (NM_001134460, exon 4 of 8)	58959.0	NM_001134460	243548.0	Mm.248820	NM_001081146	ENSMUSG00000030020	Prickle2	6230400G14Rik|6720451F06Rik|mpk2	prickle planar cell polarity protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-64491222-1	chr11	64491122	64491322	+	776.666687	f0_balb.idr	intron (NM_178870, intron 1 of 1)	intron (NM_178870, intron 1 of 1)	-54548.0	NR_028445	654805.0	Mm.436132	NR_028445		F930015N05Rik	-	RIKEN cDNA F930015N05 gene	ncRNA	1.20657074220551	0.738331771575069	1.07012922235029	0.720298740282225	1.21767969595698	1.11644213345314	1.44093940759116	1.17411021288897	1.36587818380946	0.334229490567265	0.834577676585727
Merged-chr12-55301994-3	chr12	55301859	55302059	+	788.291687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025373)	promoter-TSS (NM_025373)	-678.0	NM_025373	66132.0	Mm.383213	NM_025373	ENSMUSG00000021023	1110008L16Rik	Kiaa0391|Mrpp3|mKIAA0391	RIKEN cDNA 1110008L16 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-86871580-2	chr8	86871481	86871681	+	691.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030563, intron 1 of 6)	intron (NM_030563, intron 1 of 6)	13677.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	0.349651858063747	-0.0226109560383908	0.842164399288616	-0.032918688066975	-0.039291958712161	0.183260586576897	0.160829027217404	-0.032132410196142	-2.17875953861345	0.310138272274116	1
Merged-chr15-36828190-4	chr15	36828092	36828292	+	910.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31263.0	NM_001253806	22631.0	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-113289392-4	chr7	113289283	113289483	+	679.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357070, intron 9 of 19)	L3|LINE|CR1	79956.0	NM_133700	68815.0	Mm.238034	NM_133700	ENSMUSG00000038187	Btbd10	1110056N09Rik|Gmrp1	BTB (POZ) domain containing 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-8690026-4	chr8	8689930	8690130	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_106114)	TTS (NR_106114)	132.0	NR_106114	102465762.0		NR_106114	ENSMUSG00000098917	Mir7654	Gm27748|mmu-mir-7654	microRNA 7654	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-158497835-1	chr2	158497735	158497935	+	617.0	f1_balb.idr	3' UTR (NM_001291138, exon 30 of 30)	3' UTR (NM_001291138, exon 30 of 30)	-4777.0	NM_145635	246747.0	Mm.28800	NM_145635	ENSMUSG00000044405	Adig	SMAF-1|Smaf1	adipogenin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75190164-2	chr11	75190064	75190264	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144491, intron 1 of 12)	intron (NM_144491, intron 1 of 12)	319.0	NM_144491	116905.0	Mm.41496	NM_144491	ENSMUSG00000078789	Dph1	2310011M22Rik|4930488F09Rik|AW551873|Dph2l1|Ovca1	diphthamide biosynthesis 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-11190734-4	chr4	11190641	11190841	+	925.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009830)	promoter-TSS (NM_009830)	-610.0	NM_001037134	12448.0	Mm.35867	NM_009830	ENSMUSG00000028212	Ccne2	-	cyclin E2	protein-coding	1.12335818963309	1.23986793468257	1.3332776963575	1.29679826640186	1.13080409357399	1.24825181883229	1.34356239680512	1.3032285083598	0.0372168638287747	0.97542320328173	0.998431161219273
Merged-chr2-31383171-2	chr2	31383071	31383271	+	596.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-87099.0	NM_007494	11898.0	Mm.3217	NM_007494	ENSMUSG00000076441	Ass1	AA408052|ASS|Ass-1|fold	argininosuccinate synthetase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-48451723-2	chr17	48451623	48451823	+	613.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027292)	promoter-TSS (NM_027292)	-222.0	NM_027292	70026.0	Mm.22613	NM_027292	ENSMUSG00000023995	Tspo2	2510027D20Rik|Bzrpl1	translocator protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-59225075-3	chr4	59224989	59225189	+	777.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34962.0	NR_105031	101055769.0	Mm.421401	NR_105031		Gm12596	-	predicted gene 12596	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-16038750-3	chr9	16038655	16038855	+	937.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080814, intron 3 of 24)	intron (NM_001080814, intron 3 of 24)	-164199.0	NM_145712	244701.0	Mm.222631	NM_145712	ENSMUSG00000050901	Mtnr1b	Mel-1B-R|Mel1b|Mt2	melatonin receptor 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134531484-4	chr6	134531386	134531586	+	958.133301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008514, intron 2 of 22)	intron (NM_008514, intron 2 of 22)	35427.0	NM_008514	16974.0	Mm.321990	NM_008514	ENSMUSG00000030201	Lrp6	C030016K15Rik|Cd|Gw|ska26|ska<m26Jus>|skax26	low density lipoprotein receptor-related protein 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-99251392-2	chr10	99251292	99251492	+	610.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11839.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-111071912-2	chr10	111071812	111072012	+	610.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-61846.0	NM_172554	320150.0	Mm.339281	NM_172554	ENSMUSG00000035798	Zdhhc17	A230053P19Rik|BB187739|D130071N24Rik|DHHC-17|Hip14	zinc finger, DHHC domain containing 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21231718-2	chr9	21231618	21231818	+	829.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_016679, exon 3 of 5)	exon (NM_016679, exon 3 of 5)	7614.0	NM_016679	50868.0	Mm.248266	NM_016679	ENSMUSG00000003308	Keap1	INRF2|mKIAA0132	kelch-like ECH-associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-18624451-1	chr19	18624351	18624551	+	630.0	f0_balb.idr	intron (NM_017375, intron 1 of 9)	intron (NM_017375, intron 1 of 9)	7362.0	NM_017375	20409.0	Mm.172222	NM_017375	ENSMUSG00000024725	Ostf1	C78236|SH3P2|Sh3d3	osteoclast stimulating factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-24871261-2	chr18	24871161	24871361	+	803.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289654, intron 3 of 24)	intron (NM_001289654, intron 3 of 24)	162638.0	NM_001289655	225288.0	Mm.329322	NM_175276	ENSMUSG00000034295	Fhod3	A930009H06Rik|FHOS2|mKIAA1695	formin homology 2 domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-12497251-1	chr16	12497151	12497351	+	639.0	f0_balb.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-314139.0	NR_040507	75493.0	Mm.396146	NR_040507	ENSMUSG00000101565	1700003L19Rik	-	RIKEN cDNA 1700003L19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191273788-2	chr1	191273688	191273888	+	811.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	44330.0	NM_025424	66208.0	Mm.46444	NM_025424	ENSMUSG00000037499	Nenf	1110060M21Rik|SCIRP10|Spuf	neuron derived neurotrophic factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-66112470-3	chr17	66112351	66112551	+	854.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037757, intron 1 of 10)	RMER15|LTR|ERVL	806.0	NM_001037757	68767.0	Mm.296545	NM_026833	ENSMUSG00000024101	Washc1	1110049F14Rik|ORF19|Wash|Wash1	WASH complex subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-48480641-4	chr9	48480525	48480725	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357505)	promoter-TSS (NM_001357505)	-14.0	NM_001357503	104444.0	Mm.21911	NM_024233	ENSMUSG00000032026	Rexo2	1810038D15Rik|AW107347|Rex2|Sfn|Smfn	RNA exonuclease 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-84073967-2	chr15	84073867	84074067	+	858.3333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8618.0	NM_029946	77627.0	Mm.196288	NM_029946	ENSMUSG00000022441	Efcab6	4931407K02Rik|4932408N08Rik|bM150J22.2|mKIAA1672	EF-hand calcium binding domain 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-31077500-4	chr6	31077394	31077594	+	996.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14401.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-107381644-4	chr1	107381542	107381742	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT2D|LTR|ERVL	19328.0	NM_025867	66957.0	Mm.12638	NM_025867	ENSMUSG00000026327	Serpinb11	2310046M08Rik|AU015399	serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), member 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101173095-2	chr11	101172995	101173195	+	629.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_007721)	TTS (NM_007721)	-1723.0	NM_001346769	217198.0	Mm.273254	NM_146030	ENSMUSG00000035172	Plekhh3	BC020025	pleckstrin homology domain containing, family H (with MyTH4 domain) member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-120051761-3	chr9	120051665	120051865	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009987, exon 2 of 2)	exon (NM_009987, exon 2 of 2)	16531.0	NM_009987	13051.0	Mm.44065	NM_009987	ENSMUSG00000052336	Cx3cr1	-	chemokine (C-X3-C motif) receptor 1	protein-coding	1.9375606313646	2.55311701725121	1.1429553418836	1.52777366258508	1.85254476125556	1.95332448303524	1.57972551793577	1.82798499335675	-0.289422809917017	0.785385182859497	0.998431161219273
Merged-chr16-59471862-4	chr16	59471767	59471967	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025910)	promoter-TSS (NM_025910)	92.0	NM_025910	67014.0	Mm.289150	NM_025910	ENSMUSG00000022724	Riox2	1810047J07Rik|2410057H13Rik|3830408E23Rik|AI449204|Mina	ribosomal oxygenase 2	protein-coding	5.44639680539838	4.84741458604326	4.78739494429972	4.31557391667791	4.88031308966224	5.17745098440749	5.49788450883799	4.21895470873609	0.118206612824559	0.758300316048741	0.998431161219273
Merged-chr13-67128218-4	chr13	67128125	67128325	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172392)	promoter-TSS (NM_172392)	-3.0	NM_172392	268670.0	Mm.56274	NM_172392	ENSMUSG00000057396	Zfp759	BC028265|Rslcan-8|Rslcan8	zinc finger protein 759	protein-coding	2.83894685649231	4.21128936811481	4.1861528948456	3.01038320875369	2.86563377558985	4.24026013807854	3.13219891646901	4.48861502928242	0.215521981846485	0.72529637430958	0.998431161219273
Merged-chr12-44919092-4	chr12	44919000	44919200	+	822.983337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144552, intron 2 of 5)	MLT2B2|LTR|ERVL	155383.0	NM_144552	217517.0	Mm.285400	NM_144552	ENSMUSG00000046314	Stxbp6	BC024598|C85317	syntaxin binding protein 6 (amisyn)	protein-coding	4.32876245036226	4.88944753632464	3.38866687930793	3.85269570603382	2.83811016446946	2.81806535058417	2.13700769907238	1.50668427678681	-2.78441393048798	2.49254214980396e-05	0.000973064665293314
Merged-chr10-128554886-2	chr10	128554786	128554986	+	563.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5718.0	NM_018860	67945.0	Mm.290786	NM_018860	ENSMUSG00000093674	Rpl41	1810055P16Rik|2210411K19Rik	ribosomal protein L41	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-73953045-1	chr12	73952945	73953145	+	560.0	f0_balb.idr	Intergenic	Intergenic	-11485.0	NM_178392	75627.0	Mm.25937	NM_178392	ENSMUSG00000021113	Snapc1	2700033G17Rik|AU015787	small nuclear RNA activating complex, polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81198416-3	chr10	81198306	81198506	+	827.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_027120, exon 7 of 7)	3' UTR (NM_027120, exon 7 of 7)	3631.0	NM_027120	69564.0	Mm.437211	NM_027120	ENSMUSG00000004939	Nmrk2	2310015C21Rik|Itgb1bp3|Mibp	nicotinamide riboside kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-43918324-2	chr5	43918196	43918396	+	761.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	49487.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-142709858-2	chr5	142709758	142709958	+	831.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146257, intron 2 of 10)	ERVL-int|LTR|ERVL	7757.0	NM_146257	243328.0	Mm.125942	NM_146257	ENSMUSG00000050822	Slc29a4	ENT4|mPMAT	solute carrier family 29 (nucleoside transporters), member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-43648297-2	chr7	43648197	43648397	+	730.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_028236, intron 5 of 5)	RLTR20B2|LTR|ERVK	11864.0	NM_031181	83382.0	Mm.157702	NM_031181	ENSMUSG00000030474	Siglece	Cd170|Siglec12|Siglec5|Siglec9|Siglecl1|mSiglec-E	sialic acid binding Ig-like lectin E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47368837-4	chr17	47368729	47368929	+	929.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146212)	promoter-TSS (NM_001146212)	-58.0	NM_001146212	64657.0	Mm.216250	NM_183086	ENSMUSG00000034729	Mrps10	1110038B19Rik|AW743084|Rpms10	mitochondrial ribosomal protein S10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-184448228-2	chr1	184448128	184448328	+	612.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	109463.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44384123-4	chr7	44384017	44384217	+	834.966675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001114116)	promoter-TSS (NM_001114116)	-9.0	NM_001114116	20981.0	Mm.4824	NM_016663	ENSMUSG00000030731	Syt3	AI385753|sytIII	synaptotagmin III	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-99213442-2	chr5	99213342	99213542	+	669.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39485.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-156144193-4	chr2	156144098	156144298	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164216)	promoter-TSS (NM_001164216)	-12.0	NM_010911	18041.0	Mm.283604	NM_010911	ENSMUSG00000027618	Nfs1	AA987187|m-Nfs1|m-Nfsl	nitrogen fixation gene 1 (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-119831624-5	chr8	119831515	119831715	+	842.8666380000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028071, intron 2 of 3)	intron (NM_028071, intron 2 of 3)	8964.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-17550238-2	chr17	17550138	17550338	+	809.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172827, intron 11 of 17)	L2c|LINE|L2	74251.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31337508-4	chr14	31337386	31337586	+	881.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360187, intron 1 of 20)	intron (NM_001360187, intron 1 of 20)	848.0	NM_009796	12339.0	Mm.201535	NM_009796	ENSMUSG00000021893	Capn7	AU022319|PalBH	calpain 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-65598464-4	chr14	65598362	65598562	+	865.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5350.0	NM_028811	74195.0	Mm.29719	NM_028811	ENSMUSG00000022031	Elp3	2610507P14Rik|KAT9	elongator acetyltransferase complex subunit 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-79092746-4	chr12	79092625	79092825	+	892.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110486, intron 2 of 2)	L1MDa|LINE|L1	-3055.0	NM_029988	110417.0	Mm.268317	NM_029988	ENSMUSG00000021120	Pigh	2210416H01Rik|A930028P05Rik	phosphatidylinositol glycan anchor biosynthesis, class H	protein-coding	1.93555811657447	1.59652026580899	3.12272483104151	2.04663698096775	1.95267349111843	1.60792298292788	3.14722044907461	2.05782785174635	0.0389357923593153	0.967214077935283	0.998431161219273
Merged-chr16-17209752-2	chr16	17209652	17209852	+	696.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001033338, exon 1 of 1)	exon (NM_001033338, exon 1 of 1)	1617.0	NM_001033338	239731.0	Mm.86671	NM_001033338	ENSMUSG00000071636	Rimbp3	Gm1759|Gm603|RIM-BP3|mKIAA1666	RIMS binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-4280010-4	chr18	4279897	4280097	+	802.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	72956.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-27784079-7	chr15	27783945	27784145	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081302, intron 34 of 56)	intron (NM_001081302, intron 34 of 56)	-102503.0	NM_001242423	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-40850913-2	chr4	40850813	40851013	+	829.125	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_039584)	promoter-TSS (NR_039584)	-775.0	NR_039584	100628614.0		NR_039584	ENSMUSG00000096377	Mir5123	mmu-mir-5123|mu-mir-5123	microRNA 5123	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-4098774-2	chr11	4098674	4098874	+	601.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144520, intron 11 of 11)	intron (NM_144520, intron 11 of 11)	-3343.0	NM_026443	67900.0	Mm.41719	NM_026443	ENSMUSG00000004748	Mtfp1	1700020C11Rik|2610507A21Rik|AV005788|Mtp18	mitochondrial fission process 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83003889-1	chr6	83003789	83003989	+	575.0	f1_balb.idr	exon (NM_033079, exon 5 of 10)	exon (NM_033079, exon 5 of 10)	29582.0	NM_010070	13448.0	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	0.133709106215911	0.163095839324198	0.153640206814118	0.51738920478502	0.135591004971839	0.901352044042213	1.33097769344566	0.147534678579657	2.86418560375733	0.162638708971953	1
Merged-chr13-55985622-3	chr13	55985524	55985724	+	676.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	149926.0	NM_012015	26914.0	Mm.283802	NM_012015	ENSMUSG00000015937	H2afy	H2AF12M|mH2a1|macroH2A1	H2A histone family, member Y	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-128622695-4	chr7	128622604	128622804	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178641, intron 1 of 19)	intron (NM_178641, intron 1 of 19)	11339.0	NM_178641	101490.0	Mm.490344	NM_178641	ENSMUSG00000042105	Inpp5f	5830435P03Rik|AI115354|AW561896|SAC2|cI-27|hSAC2|mKIAA0966	inositol polyphosphate-5-phosphatase F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135012934-4	chr5	135012856	135013056	+	998.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001190437)	TTS (NM_001190437)	201.0	NR_026688	69812.0	Mm.18422	NR_026688	ENSMUSG00000085042	Abhd11os	2010001M06Rik|AI462243|Wbscr26|Wnscr26	abhydrolase domain containing 11, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-58424579-2	chr1	58424479	58424679	+	728.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027853)	promoter-TSS (NR_027853)	-491.0	NM_001042634	12747.0	Mm.1761	NM_009905	ENSMUSG00000026034	Clk1	STY	CDC-like kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-95082565-2	chr8	95082465	95082665	+	549.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028805, intron 1 of 19)	intron (NM_028805, intron 1 of 19)	1364.0	NM_028805	74187.0	Mm.28382	NM_028805	ENSMUSG00000031787	Katnb1	2410003J24Rik|KAT	katanin p80 (WD40-containing) subunit B 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-37130808-3	chr13	37130710	37130910	+	851.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-80566.0	NM_001166391	74145.0	Mm.235105	NM_028784	ENSMUSG00000039109	F13a1	1200014I03Rik|AI462306|F13a	coagulation factor XIII, A1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-8884182-2	chr19	8884082	8884282	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001286103, exon 2 of 6)	exon (NM_001286103, exon 2 of 6)	304.0	NM_001286103	102308570.0	Mm.27503	NM_001286103	ENSMUSG00000096740	Lbhd1	Gm21743	LBH domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-70827234-2	chr9	70827134	70827334	+	607.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001324473, intron 1 of 8)	ID_B1|SINE|B4	107574.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-9769771-4	chr1	9769688	9769888	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040462, intron 2 of 3)	RMER4B|LTR|ERVK	-21406.0	NM_173443	70675.0	Mm.274493	NM_173443	ENSMUSG00000045210	Vcpip1	4932442A08|5730421J18Rik|5730538E15Rik|VCIP135|mKIAA1850	valosin containing protein (p97)/p47 complex interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139783119-2	chr5	139783019	139783219	+	796.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7441.0	NM_026748	68510.0	Mm.292942	NM_026748	ENSMUSG00000029547	Ints1	1110015K06Rik	integrator complex subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-32784401-7	chr14	32784329	32784529	+	951.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1534.0	NM_001163616	69069.0	Mm.261609	NM_001163616	ENSMUSG00000041707	1810011H11Rik	4733401I05Rik	RIKEN cDNA 1810011H11 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-128373127-2	chr7	128373027	128373227	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_026418)	TTS (NM_026418)	45045.0	NM_026418	67865.0	Mm.18635	NM_026418	ENSMUSG00000030844	Rgs10	2310010N19Rik	regulator of G-protein signalling 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-77367344-2	chr15	77367244	77367444	+	978.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31766.0	NM_029419	75761.0	Mm.232636	NM_029419	ENSMUSG00000010601	Apol7a	9130022K13Rik|Apol3	apolipoprotein L 7a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-130423870-2	chr2	130423778	130423978	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030559)	promoter-TSS (NM_030559)	410.0	NM_178762	319513.0	Mm.482539	NM_178762	ENSMUSG00000037773	Pced1a	A930025D01Rik|AI480484|Fam113a	PC-esterase domain containing 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-57406694-4	chr1	57406556	57406756	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302963)	promoter-TSS (NM_001302963)	18.0	NM_001302962	68736.0	Mm.288490	NM_001037742	ENSMUSG00000048495	Tyw5	1110034B05Rik	tRNA-yW synthesizing protein 5	protein-coding	2.06115448670782	3.12606173068134	2.48837520570641	2.30138435155125	2.20242765192078	1.75424205340404	2.80926132117655	2.43088904440014	-0.423394465889667	0.610543155667118	0.975183586809945
Merged-chr2-93588269-3	chr2	93588169	93588369	+	743.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54165.0	NM_007442	11695.0	Mm.389389	NM_007442	ENSMUSG00000040310	Alx4	lst	aristaless-like homeobox 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4298060-2	chr19	4297960	4298160	+	701.599976	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290818, intron 1 of 20)	intron (NM_001290818, intron 1 of 20)	8162.0	NM_130863	110355.0	Mm.254144	NM_130863	ENSMUSG00000024858	Grk2	Adrbk-1|Adrbk1|Bark-1|beta ARK|betaARK1	G protein-coupled receptor kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71683287-2	chr8	71683197	71683397	+	774.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001190830, intron 13 of 23)	intron (NM_001190830, intron 13 of 23)	-5955.0	NM_013564	16336.0	Mm.476857	NM_013564	ENSMUSG00000079019	Insl3	Rlf|Rlnl	insulin-like 3	protein-coding	-1.36228443970301	-1.47756677603243	-1.33846019580931	-1.4947625916242	-1.35848085293746	-1.47552090798654	-1.48487041191896	-1.4933744535731	-0.636205087908397	0.844685658509124	1
Merged-chr14-70392769-7	chr14	70392653	70392853	+	996.0476070000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021308, intron 16 of 22)	intron (NM_021308, intron 16 of 22)	36341.0	NM_021308	57746.0	Mm.85253	NM_021308	ENSMUSG00000033644	Piwil2	Piwil1l|mili	piwi-like RNA-mediated gene silencing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-75784411-2	chr14	75784311	75784511	+	557.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026232, intron 1 of 9)	ORR1A2|LTR|ERVL-MaLR	2626.0	NM_026232	67554.0	Mm.46067	NM_026232	ENSMUSG00000022003	Slc25a30	4933433D23Rik|AV025504|AV221431|AW319655|KMCP1	solute carrier family 25, member 30	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3067959-2	chr4	3067859	3068059	+	764.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-104124.0	NM_001167534	100312470.0	Mm.480297	NM_001167534	ENSMUSG00000115072	Vmn1r2	Gm11776	vomeronasal 1 receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-24428161-2	chr5	24428061	24428261	+	669.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009207, intron 2 of 22)	intron (NM_009207, intron 2 of 22)	640.0	NM_001253892	20535.0	Mm.4580	NM_009207	ENSMUSG00000028962	Slc4a2	Ae2|B3RP	solute carrier family 4 (anion exchanger), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-40506636-1	chr9	40506536	40506736	+	678.0	f0_balb.idr	intron (NM_001357617, intron 1 of 20)	MTEa|LTR|ERVL-MaLR	24747.0	NM_001357617	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	-0.802593673557486	-0.793094718163527	-0.341243695287107	-0.798614554876962	-0.802002397560642	-0.791090896558683	-0.332078011335404	-0.79819523297655	0.040958530317021	0.989184000390448	1
Merged-chr8-94308079-2	chr8	94307979	94308179	+	684.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357268, intron 15 of 20)	intron (NM_001357268, intron 15 of 20)	-16232.0	NR_029552	723956.0		NR_029552	ENSMUSG00000065512	Mir138-2	Mirn138-2|mir-138-2	microRNA 138-2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117822756-2	chr11	117822656	117822856	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271729, intron 2 of 5)	intron (NM_001271729, intron 2 of 5)	-3163.0	NM_027827	71562.0	Mm.273958	NM_027827	ENSMUSG00000017718	Afmid	9030621K19Rik|Ammd|FKF|KFA|Kf|formylase	arylformamidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-37299057-2	chr13	37298965	37299165	+	770.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	(GCTG)n|Simple_repeat|Simple_repeat	-46280.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	2.52150501932453	3.02584484605866	2.52332193613976	3.25071458254216	2.2220924067835	1.46576173340868	1.69733716286476	2.93480703720815	-1.29164235993087	0.131045487005471	0.566336454410263
Merged-chr1-36131865-3	chr1	36131757	36131957	+	913.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12456.0	NR_105862	102465540.0		NR_105862	ENSMUSG00000098752	Mir6897	Gm27652|mmu-mir-6897	microRNA 6897	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-29861331-2	chr10	29861231	29861431	+	770.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-325464.0	NM_028351	72780.0	Mm.45191	NM_028351	ENSMUSG00000019880	Rspo3	2810459H04Rik|AW742308|Cristin1|Thsd2	R-spondin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24206087-2	chr17	24205973	24206173	+	932.5	f0_c57.idr|f1_c57bl6.idr	promoter-TSS (NM_173186)	promoter-TSS (NM_173186)	-511.0	NM_001163850	224617.0	Mm.301585	NM_173186	ENSMUSG00000036473	Tbc1d24	9630033P11|C530046L02Rik|mKIAA1171	TBC1 domain family, member 24	protein-coding	0.780027416997194	1.01797035799916	1.11171482207798	1.07622785542138	1.02490417817655	0.663603887152163	0.836811108398335	1.290210123595	-0.0956469359504856	0.946179647771111	1
Merged-chr7-27227821-2	chr7	27227721	27227921	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_181593, exon 1 of 7)	exon (NM_181593, exon 1 of 7)	776.0	NM_181593	233011.0	Mm.30963	NM_181593	ENSMUSG00000003752	Itpkc	9130023N17Rik	inositol 1,4,5-trisphosphate 3-kinase C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-47311660-4	chr4	47311556	47311756	+	777.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009928, intron 39 of 39)	intron (NM_009928, intron 39 of 39)	-41566.0	NM_001312868	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-106369101-4	chr9	106369051	106369251	+	861.212524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_153459, exon 1 of 3)	exon (NM_153459, exon 1 of 3)	519.0	NM_153459	235584.0	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	0.128935858960212	0.612426221213407	0.139726809188831	0.290648457119507	0.492039331128058	0.146206489158678	0.311466160636666	0.647846826322984	0.773826903754639	0.688449826582603	1
Merged-chr6-8693513-2	chr6	8693413	8693613	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252266, intron 5 of 11)	intron (NM_001252266, intron 5 of 11)	64945.0	NM_001252266	15893.0	Mm.275683	NM_010492	ENSMUSG00000062995	Ica1	69kDa|ICA69	islet cell autoantigen 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127578957-1	chr10	127578857	127579057	+	593.0	f1_balb.idr	intron (NM_008512, intron 20 of 88)	intron (NM_008512, intron 20 of 88)	42191.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	-0.653122373755394	-0.642934863307054	-0.646281295438407	-0.648857345933536	-0.179443366957188	-0.642179371511268	-0.645543941694064	-0.117617978577273	3.30832811362023	0.244306257817071	1
Merged-chr17-29024133-2	chr17	29024033	29024233	+	550.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-8527.0	NM_013663	20383.0	Mm.6787	NM_013663	ENSMUSG00000071172	Srsf3	AL024116|Sfrs3|X16	serine/arginine-rich splicing factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24642980-2	chr17	24642880	24643080	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023055, intron 2 of 6)	intron (NM_023055, intron 2 of 6)	1977.0	NM_023449	65962.0	Mm.21587	NM_023055	ENSMUSG00000002504	Slc9a3r2	0610011L07Rik|1200011K07Rik|2010007A20Rik|E3karp|NHERF-2|Nherf2|Octs2|Sip-1|Sip1|Sryip1|Tka-1	solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56271215-2	chr17	56271115	56271315	+	947.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_174989, exon 2 of 2)	exon (NM_174989, exon 2 of 2)	5552.0	NM_174989	106759.0	Mm.203952	NM_174989	ENSMUSG00000047123	Ticam1	AW046014|AW547018|TICAM-1|TRIF	toll-like receptor adaptor molecule 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-5499711-2	chr6	5499611	5499811	+	647.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3433.0	NM_013743	27273.0	Mm.235547	NM_013743	ENSMUSG00000019577	Pdk4	AV005916	pyruvate dehydrogenase kinase, isoenzyme 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98193124-7	chr11	98192981	98193181	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013634)	promoter-TSS (NM_013634)	-175.0	NM_013634	19014.0	Mm.12926	NM_013634	ENSMUSG00000018160	Med1	AI480703|CRSP210|DRIP205|PBP|Pparbp|TRAP220|TRIP-2|l11Jus15	mediator complex subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-47052647-6	chr7	47052582	47052782	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026436, intron 1 of 2)	intron (NM_026436, intron 1 of 2)	2042.0	NM_026436	67893.0	Mm.27338	NM_026436	ENSMUSG00000010307	Tmem86a	1810054O13Rik|AI414959|AW742698	transmembrane protein 86A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-12949651-4	chr7	12949570	12949770	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16168.0	NM_001362140	243834.0	Mm.133086	NM_178732	ENSMUSG00000004500	Zfp324	A930002M05|D430030K24Rik|ZF5128	zinc finger protein 324	protein-coding	6.76878141093103	6.69237616632477	6.94380293059057	6.52117192577028	6.93464592930551	6.88592124906387	7.11994894263598	6.5732816611956	0.160796052304793	0.39474864571422	0.882837719236596
Merged-chr10-98897724-4	chr10	98897616	98897816	+	975.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16926.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30321057-4	chr7	30320898	30321098	+	649.875	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001033140)	TTS (NM_001033140)	1377.0	NM_001033140	68332.0	Mm.6844	NM_001033140	ENSMUSG00000074211	Sdhaf1	0610010E21Rik|AI430885|AW490662|Lyrm8	succinate dehydrogenase complex assembly factor 1	protein-coding	2.06392560868407	1.13334063784488	1.11168226046761	2.09323341160037	1.69715096229368	1.58833508751922	1.96435128339954	2.19289184128507	0.505710981439976	0.65772226161074	0.988704682801132
Merged-chr8-70760402-3	chr8	70760274	70760474	+	892.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_183170, exon 2 of 5)	exon (NM_183170, exon 2 of 5)	547.0	NM_183170	234384.0	Mm.213010	NM_183170	ENSMUSG00000035559	Mpv17l2	Fksg24	MPV17 mitochondrial membrane protein-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-37689666-4	chr19	37689555	37689755	+	963.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001105201, intron 4 of 5)	intron (NM_001105201, intron 4 of 5)	3975.0	NM_001105201	546726.0	Mm.457750	NM_001105201	ENSMUSG00000062432	Cyp26c1	EG546726	cytochrome P450, family 26, subfamily c, polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-118591761-4	chr14	118591707	118591907	+	929.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_105815)	TTS (NR_105815)	665.0	NR_105815	102465208.0		NR_105815	ENSMUSG00000098433	Mir6391	Gm27914|mmu-mir-6391	microRNA 6391	ncRNA	2.52907239193764	3.37406366307771	2.92370359467663	1.28070132114503	2.137613272241	2.5491872151567	1.60192922644691	1.95525596966044	-1.29263935350769	0.163466557639162	0.626389001936116
Merged-chr5-31942817-3	chr5	31942686	31942886	+	806.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144541, intron 7 of 11)	intron (NM_144541, intron 7 of 11)	-193686.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	0.186767371854928	0.223049582018649	0.211464137377911	0.421400512105777	1.3448457055986	1.45196119368095	0.214043211950961	0.203939661242228	3.90620134699841	0.0442497522069994	0.301995749135141
Merged-chr8-14887700-2	chr8	14887600	14887800	+	695.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_012000)	promoter-TSS (NM_012000)	-836.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-82810211-1	chr13	82810111	82810311	+	739.0	f1_c57bl6.idr	Intergenic	ORR1A4-int|LTR|ERVL-MaLR	-111878.0	NR_039537	100628621.0		NR_039537	ENSMUSG00000106655	Mir3961	mmu-mir-3961	microRNA 3961	ncRNA	-0.0661849490735997	1.36372557289207	-0.0446519580464184	0.762773976431004	-0.0641368969292871	-0.0323118671081129	-0.042403862661457	-0.0512116420905754	-4.47692044647463	0.036182834245879	1
Merged-chr6-56923920-4	chr6	56923844	56924044	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026004)	promoter-TSS (NM_026004)	-12.0	NM_001360963	107569.0	Mm.158936	NM_026004	ENSMUSG00000029780	Nt5c3	1600024P05Rik|2610206B05Rik|3110004A18Rik|AI842776|Nt5c3a|Nt5y|P5'N-1|P5N-1|PN-1|PN-I|PSN1|UMPH|Umph-1|Umph1|cN-III|lupin|p36	5'-nucleotidase, cytosolic III	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70859031-1	chr14	70858931	70859131	+	545.0	f0_balb.idr	intron (NR_045939, intron 2 of 3)	MTD|LTR|ERVL-MaLR	6098.0	NR_045939	73648.0	Mm.410851	NR_045939	ENSMUSG00000099528	2410012E07Rik	-	RIKEN cDNA 2410012E07 gene	ncRNA	-1.29366267883784	-1.26551373834737	-1.2756574132587	-0.863019910137588	-1.14611741205902	-1.26331556167873	-1.2733611076018	-1.28249824916415	-1.22377030845534	0.719508055934226	1
Merged-chr4-116627972-4	chr4	116627873	116628073	+	969.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016777)	promoter-TSS (NM_016777)	-22.0	NM_016777	50927.0	Mm.257181	NM_016777	ENSMUSG00000028693	Nasp	5033430J04Rik|AI131596|AI317140|D4Ertd767e|Epcs32|Nasp-T	nuclear autoantigenic sperm protein (histone-binding)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-102753559-2	chr11	102753459	102753659	+	735.599976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7876.0	NM_009613	11488.0	Mm.89854	NM_009613	ENSMUSG00000020926	Adam11	AW060611|Mdc	a disintegrin and metallopeptidase domain 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-64794554-1	chr9	64794454	64794654	+	577.0	f0_balb.idr	Intergenic	Intergenic	-16457.0	NM_001162917	102442.0	Mm.222473	NM_176935	ENSMUSG00000053641	Dennd4a	AI115600|AI851943|F730015K02Rik	DENN/MADD domain containing 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-96917958-6	chr5	96917866	96918066	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3306.0	NR_131152	666266.0	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	3.24324635938826	2.25414395386593	3.43962117862708	1.87002020794061	3.46832858911594	3.93515650352852	3.92586418883929	3.19214831252681	1.26500897927795	0.0554574065671392	0.346190407904546
Merged-chr6-134527778-1	chr6	134527678	134527878	+	584.0	f0_balb.idr	intron (NM_008514, intron 2 of 22)	intron (NM_008514, intron 2 of 22)	39135.0	NM_008514	16974.0	Mm.321990	NM_008514	ENSMUSG00000030201	Lrp6	C030016K15Rik|Cd|Gw|ska26|ska<m26Jus>|skax26	low density lipoprotein receptor-related protein 6	protein-coding	1.78567294792083	2.05089315115847	1.97004984484195	3.67935958354567	1.99764348278195	3.41043407842962	2.80511754256792	4.16225844404836	1.1166757954461	0.181971650387107	0.655513168938505
Merged-chr11-119991453-4	chr11	119991325	119991525	+	949.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037754, intron 6 of 13)	intron (NM_001037754, intron 6 of 13)	-23342.0	NR_037225	100526518.0		NR_037225	ENSMUSG00000105524	Mir3065	mir-3065|mmu-mir-3065	microRNA 3065	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-79359439-1	chr15	79359339	79359539	+	1000.0	f1_balb.idr	TTS (NM_001304830)	TTS (NM_001304830)	11037.0	NM_001304832	17133.0	Mm.86646	NM_010755	ENSMUSG00000042622	Maff	-	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein F (avian)	protein-coding	-0.10129403594322	0.888449436571122	-0.0841680231382033	-0.0905353608562804	-0.0996781901533225	0.903496030457706	-0.0823628092250997	-0.0894170162904303	0.0395142251790123	0.986378381761409	1
Merged-chr15-68066787-4	chr15	68066732	68066932	+	866.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	192024.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-113771707-6	chr5	113771658	113771858	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_151532, exon 1 of 17)	non-coding (NR_151532, exon 1 of 17)	642.0	NR_151532	53890.0	Mm.29594	NM_016926	ENSMUSG00000018974	Sart3	AU045857|mKIAA0156	squamous cell carcinoma antigen recognized by T cells 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-30512589-1	chr16	30512489	30512689	+	564.0	f0_balb.idr	3' UTR (NM_172614, exon 10 of 10)	3' UTR (NM_172614, exon 10 of 10)	37989.0	NM_172614	224090.0	Mm.241459	NM_172614	ENSMUSG00000022537	Tmem44	1700007N03Rik|9330161C17Rik|B230220N21	transmembrane protein 44	protein-coding	1.24163218749332	1.19332859947284	0.946688244932916	1.30223200582663	1.50010552051363	1.55356077266272	2.03888136104132	1.79295713241731	2.16556159322063	0.0719913600491108	0.404252264213369
Merged-chr4-59187578-2	chr4	59187478	59187678	+	810.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1972.0	NM_011673	22234.0	Mm.198803	NM_011673	ENSMUSG00000028381	Ugcg	AU043821|C80537|Epcs21|GlcT-1|Ugcgl	UDP-glucose ceramide glucosyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-35294847-4	chr12	35294726	35294926	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-99929.0	NR_030449	751520.0		NR_030449	ENSMUSG00000076253	Mir680-3	Mirn680-3	microRNA 680-3	ncRNA	3.38743105614819	3.93904417777343	3.74354617870123	2.61125797137206	3.93929722489958	3.46843902171511	4.19087226800061	3.42841762148422	0.437210062377	0.425772504689721	0.901803903366001
Merged-chr10-126928772-3	chr10	126928771	126928971	+	903.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27500.0	NM_001358970	68876.0	Mm.276769	NM_026858	ENSMUSG00000025436	Atp23	1110068E08Rik|2410012H02Rik|Xrcc6bp1	ATP23 metallopeptidase and ATP synthase assembly factor homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-32379537-4	chr12	32379450	32379650	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001162903, exon 1 of 1)	exon (NM_001162903, exon 1 of 1)	761.0	NM_001162903	72123.0	Mm.341352	NM_028111	ENSMUSG00000090946	Ccdc71l	2010109K11Rik|AV375874	coiled-coil domain containing 71 like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-94861493-3	chr8	94861391	94861591	+	789.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009090, intron 4 of 8)	intron (NM_009090, intron 4 of 8)	4041.0	NM_009090	20021.0	Mm.292492	NM_009090	ENSMUSG00000031783	Polr2c	33kDa|RPB3|Rpo2-3|mRBP31	polymerase (RNA) II (DNA directed) polypeptide C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-124228761-3	chr4	124228693	124228893	+	702.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	257166.0	NR_040774	78460.0	Mm.452060	NR_040774		1700057H15Rik	-	RIKEN cDNA 1700057H15 gene	ncRNA	-0.165564197137291	-0.150729931873146	0.29851162186971	0.556211792872871	0.107114278353776	-0.149633937995812	-0.154519061692255	-0.158685730232244	-2.23762188902739	0.348398557388961	1
Merged-chr12-81915773-3	chr12	81915666	81915866	+	700.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018814, intron 5 of 35)	intron (NM_018814, intron 5 of 35)	55736.0	NM_018814	54604.0	Mm.86584	NM_018814	ENSMUSG00000021140	Pcnx	2900024E21Rik|3526401J03Rik|AF096286|AI327143|AI413187|Pcnx1|Pcnxl1	pecanex homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-75872932-4	chr10	75872762	75872962	+	856.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR12G|LTR|ERVK	-12612.0	NM_010798	17319.0	Mm.2326	NM_010798	ENSMUSG00000033307	Mif	GIF|Glif	macrophage migration inhibitory factor (glycosylation-inhibiting factor)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69124264-4	chr11	69124137	69124337	+	946.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_033041)	TTS (NM_033041)	-2140.0	NM_011786	23801.0	Mm.41989	NM_011786	ENSMUSG00000020892	Aloxe3	e-LOX-3|eLOX-3	arachidonate lipoxygenase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27681873-2	chr2	27681773	27681973	+	786.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011305, intron 1 of 9)	intron (NM_011305, intron 1 of 9)	4672.0	NM_011305	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-23311877-3	chr16	23311783	23311983	+	946.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252506, intron 1 of 6)	L2|LINE|L2	21413.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153089065-1	chr2	153088965	153089165	+	734.0	f1_balb.idr	Intergenic	B3|SINE|B2	-19403.0	NM_001172117	15162.0	Mm.715	NM_010407	ENSMUSG00000003283	Hck	AI849071|Bmk	hemopoietic cell kinase	protein-coding	1.04389268626524	0.903621984473322	1.32483301099848	2.23996672220314	1.22654362769643	2.17796522048589	1.78080467685601	0.868695863664583	0.303728654938265	0.813561986866165	0.998431161219273
Merged-chr11-54954968-2	chr11	54954868	54955068	+	574.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271456, intron 1 of 18)	RLTR11C_MM|LTR|ERVK	7972.0	NM_021327	57783.0	Mm.259671	NM_021327	ENSMUSG00000020400	Tnip1	ABIN|ABIN-1|ABIN1|AU018810|Naf1|Nef|VAN	TNFAIP3 interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47221457-7	chr17	47221359	47221559	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001097623, intron 3 of 19)	intron (NM_001097623, intron 3 of 19)	-8771.0	NM_172622	224829.0	Mm.260989	NM_172622		Trerf1	9430096I18Rik|AI429294|B830015H24|RAPA|Trep-132|Trep132	transcriptional regulating factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-67479484-4	chr15	67479382	67479582	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	252713.0	NR_045140	69334.0	Mm.63770	NR_045140	ENSMUSG00000102069	1700012I11Rik	-	RIKEN cDNA 1700012I11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-33195228-3	chr14	33195149	33195349	+	768.866638	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20D|LTR|ERVK	-10183.0	NM_001146022	545030.0	Mm.318345	NM_001146022	ENSMUSG00000051506	Wdfy4	Gm18810	WD repeat and FYVE domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-50261701-2	chr15	50261601	50261801	+	600.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	627348.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-106020043-3	chr1	106019941	106020141	+	863.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122675, intron 8 of 12)	intron (NM_001122675, intron 8 of 12)	29635.0	NM_001122675	227449.0	Mm.210188	NM_001122675	ENSMUSG00000038866	Zcchc2	9930114B20Rik|AW212015	zinc finger, CCHC domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-94123072-1	chr13	94122972	94123172	+	1000.0	f0_balb.idr	intron (NM_172589, intron 2 of 3)	intron (NM_172589, intron 2 of 3)	65276.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-42126555-2	chr19	42126455	42126655	+	719.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_027106, intron 1 of 2)	intron (NM_027106, intron 1 of 2)	2438.0	NM_027106	69534.0	Mm.30060	NM_027106	ENSMUSG00000018821	Avpi1	2310008N12Rik|AA410041|VIT32|esu|mVIT32	arginine vasopressin-induced 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120103624-3	chr8	120103536	120103736	+	883.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-2164.0	NM_133967	102193.0	Mm.240076	NM_133967	ENSMUSG00000031823	Zdhhc7	AL024087|Gramp2	zinc finger, DHHC domain containing 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-100859272-4	chr13	100859142	100859342	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25815.0	NM_022885	69048.0	Mm.402215	NM_022885	ENSMUSG00000021629	Slc30a5	1810010K08Rik|AF233321|ZNT5|ZTL1|ZnT-5|Zntl1	solute carrier family 30 (zinc transporter), member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-12415210-2	chr13	12415110	12415310	+	917.5166630000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_144835, intron 20 of 44)	B2_Mm1a|SINE|B2	19835.0	NM_144835	217995.0	Mm.171186	NM_144835	ENSMUSG00000050244	Heatr1	AA517551|B130016L12Rik|BC019693	HEAT repeat containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-112811871-4	chr13	112811769	112811969	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008903, intron 1 of 5)	MIRc|SINE|MIR	11092.0	NM_008247	19012.0	Mm.291029	NM_008247	ENSMUSG00000021759	Plpp1	Hic53|Hpic53|LPP-1|LPP1|PAP-2a|PAP2-alpha|PAP2a|Ppap2a|mPAP	phospholipid phosphatase 1	protein-coding	0.861780146460149	0.53249881564934	1.9557342283116	0.502884692781796	0.87162836587199	0.536147994584628	1.82147003905808	0.505199676950018	-0.210163227406365	0.89685831143716	0.998431161219273
Merged-chr19-4166037-2	chr19	4165937	4166137	+	709.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_134148, exon 10 of 10)	exon (NM_134148, exon 10 of 10)	-2654.0	NR_153659	58988.0	Mm.271937	NM_021485	ENSMUSG00000024830	Rps6kb2	S6K-beta-2|S6K2	ribosomal protein S6 kinase, polypeptide 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-53776822-2	chr11	53776722	53776922	+	634.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001159396, exon 10 of 10)	3' UTR (NM_001159396, exon 10 of 10)	6349.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126472658-2	chr7	126472558	126472758	+	786.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_110346, exon 1 of 10)	non-coding (NR_110346, exon 1 of 10)	436.0	NR_110346	20399.0	Mm.8538	NM_011363	ENSMUSG00000030733	Sh2b1	AI425885|C530001K22Rik|Irip|Psm|SH2-B|SH2-Bb|Sh2bpsm1|mKIAA1299	SH2B adaptor protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-131825997-3	chr4	131825906	131826106	+	883.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083119, intron 1 of 30)	intron (NM_001083119, intron 1 of 30)	12272.0	NM_011214	19273.0	Mm.4860	NM_011214	ENSMUSG00000028909	Ptpru	Ftp-1|PCP-2|PTP|PTP-lambda|PTPlambda|Pcp2|Ptpf|Ptprl|R-PTP-U|R-PTP-psi|RPTPlambda	protein tyrosine phosphatase, receptor type, U	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-168117348-4	chr2	168117236	168117436	+	826.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	36332.0	NM_021409	58220.0	Mm.292834	NM_021409	ENSMUSG00000044641	Pard6b	AV025615|Par6b	par-6 family cell polarity regulator beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70761075-4	chr8	70760988	70761188	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183170)	promoter-TSS (NM_183170)	-167.0	NM_183170	234384.0	Mm.213010	NM_183170	ENSMUSG00000035559	Mpv17l2	Fksg24	MPV17 mitochondrial membrane protein-like 2	protein-coding	7.89418207716298	7.97436584175205	8.51653345424113	8.03831084558148	8.22814734515318	8.30109892074618	8.38564520444385	8.1719495786158	0.151327048015814	0.293219509481816	0.797649214211793
Merged-chr13-52636360-4	chr13	52636267	52636467	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011518, intron 9 of 13)	intron (NM_011518, intron 9 of 13)	39485.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-45899916-4	chr8	45899825	45900025	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016798, intron 2 of 6)	intron (NM_016798, intron 2 of 6)	14440.0	NM_016798	53318.0	Mm.282900	NM_016798	ENSMUSG00000031636	Pdlim3	AI463105|ALP|Actn2lp	PDZ and LIM domain 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30715187-2	chr7	30715087	30715287	+	773.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_018731, intron 5 of 21)	intron (NM_018731, intron 5 of 21)	2978.0	NM_001290627	11944.0	Mm.12821	NM_018731	ENSMUSG00000005553	Atp4a	-	ATPase, H+/K+ exchanging, gastric, alpha polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-46726590-2	chr13	46726490	46726690	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175749, intron 1 of 21)	intron (NM_175749, intron 1 of 21)	1259.0	NM_175749	218210.0	Mm.255398	NM_175749	ENSMUSG00000021374	Nup153	B130015D15Rik|C88147	nucleoporin 153	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-119352266-4	chr9	119352205	119352405	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5076.0	NM_001199568	102448.0	Mm.219497	NM_001033209	ENSMUSG00000035769	Xylb	AI132223|AI327421	xylulokinase homolog (H. influenzae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-31447409-3	chr15	31447298	31447498	+	757.194458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145852, intron 3 of 4)	intron (NM_145852, intron 3 of 4)	6291.0	NM_145852	252967.0	Mm.436668	NM_145852	ENSMUSG00000022236	Ropn1l	ASP|AV047578|Akapasp	ropporin 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-21502549-3	chr10	21502414	21502614	+	910.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-90631.0	NR_027968	67692.0	Mm.54306	NM_183266	ENSMUSG00000050844	1700020N01Rik	-	RIKEN cDNA 1700020N01 gene	ncRNA	0.605135970454324	0.6530763525628	0.86720879129068	1.17082957580885	1.2303904857803	2.03566508997353	1.36545523110478	0.627868459122435	2.32491420445628	0.120766796153718	0.545542176299813
Merged-chr7-43532492-4	chr7	43532301	43532501	+	815.614563	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111058, intron 2 of 6)	intron (NM_001111058, intron 2 of 6)	770.0	NM_001111058	12489.0	Mm.140157	NM_021293	ENSMUSG00000004609	Cd33	Siglec-3|gp67	CD33 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47216024-4	chr17	47215947	47216147	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001097623, intron 3 of 19)	MIR3|SINE|MIR	-14183.0	NM_172622	224829.0	Mm.260989	NM_172622		Trerf1	9430096I18Rik|AI429294|B830015H24|RAPA|Trep-132|Trep132	transcriptional regulating factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-98894612-4	chr10	98894511	98894711	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT2B2|LTR|ERVL	-20031.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-60216585-3	chr2	60216459	60216659	+	760.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020575, intron 1 of 9)	B1_Mm|SINE|Alu	6623.0	NM_020575	57438.0	Mm.260635	NM_020575	ENSMUSG00000026977	March7	Axo|Axot|Gtrgeo17	membrane-associated ring finger (C3HC4) 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-113402874-4	chr5	113402776	113402976	+	898.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45582.0	NM_001012726	503692.0	Mm.348794	NM_001012726	ENSMUSG00000053873	Aym1	-	activator of yeast meiotic promoters 1	protein-coding	1.89053543950109	1.03223818597819	0.406182948247749	0.610713110534594	0.73780545309711	0.421771144555158	0.641457058599013	0.397903057159591	-2.68157149288484	0.107704915765241	0.513338286288941
Merged-chr14-33193997-4	chr14	33193893	33194093	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8927.0	NM_001146022	545030.0	Mm.318345	NM_001146022	ENSMUSG00000051506	Wdfy4	Gm18810	WD repeat and FYVE domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-34776190-4	chr11	34776085	34776285	+	931.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033374, intron 1 of 51)	intron (NM_033374, intron 1 of 51)	7720.0	NM_033374	94176.0	Mm.380679	NM_033374	ENSMUSG00000020143	Dock2	AI662014|AW122239|CED-5|Hch|MBC	dedicator of cyto-kinesis 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132922745-4	chr4	132922627	132922827	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163792)	promoter-TSS (NM_001163792)	-176.0	NM_001163792	230789.0	Mm.11473	NM_145553	ENSMUSG00000028878	Fam76a	-	family with sequence similarity 76, member A	protein-coding	5.21158035501402	4.94383218140926	5.96028444122097	3.57121209187295	5.19825971831207	3.8610488781068	5.56138646339594	5.06950156231021	-0.125481170770167	0.786296544279306	0.998431161219273
Merged-chr18-64511112-4	chr18	64511034	64511234	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142950, intron 5 of 14)	intron (NM_001142950, intron 5 of 14)	5423.0	NM_027350	70223.0	Mm.29192	NM_027350	ENSMUSG00000024587	Nars	3010001M15Rik|AA960128|ASNRS|C78150	asparaginyl-tRNA synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-74304609-4	chr1	74304509	74304709	+	961.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027154)	promoter-TSS (NM_027154)	-273.0	NM_027154	69660.0	Mm.261182	NM_027154	ENSMUSG00000006301	Tmbim1	2310061B02Rik|AA960455|AU024746|C78899|RECS1|Tmbib1|mKIAA4161	transmembrane BAX inhibitor motif containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-95142610-4	chr8	95142472	95142672	+	989.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145831)	promoter-TSS (NM_001145831)	-32.0	NM_001145831	16582.0	Mm.378951	NM_010631	ENSMUSG00000031788	Kifc3	AI325457|BB123200	kinesin family member C3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-155076129-4	chr1	155076025	155076225	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151545, intron 3 of 6)	intron (NR_151545, intron 3 of 6)	7139.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-10965133-6	chr4	10964995	10965195	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42524.0	NM_175175	71801.0	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	3.0089596103811	3.21018553370039	3.99442506718415	1.45502885919301	2.58885746064072	3.03535238050903	2.41234327460419	2.47918359525497	-0.954923983554264	0.23138059756004	0.725747702762793
Merged-chr16-20159162-3	chr16	20159064	20159264	+	853.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001145931, exon 6 of 8)	exon (NM_001145931, exon 6 of 8)	17070.0	NR_030454	735274.0		NR_030454	ENSMUSG00000106252	Mir684-1	Mirn684-1	microRNA 684-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132570883-2	chr4	132570783	132570983	+	804.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081211, intron 1 of 1)	B2_Mm2|SINE|B2	6816.0	NM_001081211	19204.0	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46137370-4	chr19	46137267	46137467	+	918.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008852, exon 2 of 4)	exon (NM_008852, exon 2 of 4)	5468.0	NM_007703	12686.0	Mm.21806	NM_007703	ENSMUSG00000038754	Elovl3	CIN-2|Cig30	elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80573429-2	chr10	80573329	80573529	+	556.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_078477, intron 1 of 1)	intron (NM_078477, intron 1 of 1)	3867.0	NM_078477	118445.0	Mm.41513	NM_078477	ENSMUSG00000035397	Klf16	AI843742|BTEB4|DRRF	Kruppel-like factor 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-135681499-3	chr3	135681393	135681593	+	742.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008689, intron 1 of 24)	intron (NM_008689, intron 1 of 24)	10054.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-45058466-4	chr19	45058354	45058554	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10878.0	NM_001362381	94280.0	Mm.36169	NM_053197	ENSMUSG00000025212	Sfxn3	-	sideroflexin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124965404-6	chr6	124965259	124965459	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001355541, exon 1 of 8)	5' UTR (NM_001355541, exon 1 of 8)	179.0	NM_012003	26894.0	Mm.244536	NM_012003	ENSMUSG00000030127	Cops7a	D6Ertd35e|SGN7a	COP9 signalosome subunit 7A	protein-coding	4.9201867497604	5.04056931283343	5.50750436466228	3.48754330286333	5.20677445375202	5.40660839233365	5.48981077357279	4.82371838817029	0.403088449719513	0.307342470552596	0.808267677056645
Merged-chr16-93798058-4	chr16	93797991	93798191	+	712.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027293, intron 27 of 36)	intron (NM_027293, intron 27 of 36)	-3190.0	NR_151466	102633000.0	Mm.443436	NR_151466		2310043M15Rik	-	RIKEN cDNA 2310043M15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-17912817-2	chr17	17912717	17912917	+	608.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24993.0	NM_008039	14289.0	Mm.378918	NM_008039	ENSMUSG00000052270	Fpr2	E330010I07Rik|Fpr-rs2	formyl peptide receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-82225135-2	chr12	82225035	82225235	+	608.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001167983, intron 1 of 23)	intron (NM_001167983, intron 1 of 23)	55119.0	NM_001167983	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-8670136-2	chr16	8670036	8670236	+	597.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025821, intron 1 of 3)	intron (NM_025821, intron 1 of 3)	2017.0	NM_025821	52502.0	Mm.142095	NM_025821	ENSMUSG00000008393	Carhsp1	1200011K09Rik|Crhsp-24|D16Ertd465e	calcium regulated heat stable protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-76851852-4	chr14	76851718	76851918	+	711.875	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	91687.0	NR_153763	73883.0	Mm.489041	NR_153763		4930431P22Rik	-	RIKEN cDNA 4930431P22 gene	ncRNA	0.673149868864571	0.774931038554748	0.742017338161792	0.830592532641168	0.679632626919206	0.78230442075244	0.43961374180485	0.588746749199495	-0.825482812736384	0.594721058830139	1
Merged-chr3-116162331-4	chr3	116162242	116162442	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32654.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-73425372-2	chr7	73425272	73425472	+	581.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49598.0	NR_040324	319783.0	Mm.349813	NR_040324	ENSMUSG00000097756	A730056A06Rik	C76391	RIKEN cDNA A730056A06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-83123110-3	chr17	83123004	83123204	+	793.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44879.0	NR_045094	100503434.0	Mm.187281	NR_045094		Gm19689	-	predicted gene, 19689	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-45395604-4	chr13	45395399	45395599	+	899.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153789, intron 2 of 6)	intron (NM_153789, intron 2 of 6)	5757.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	-0.953721354153451	-1.41025554057125	-1.42001056191158	-1.42802362688808	-1.44024889148474	-1.40814158675276	-1.41780223890411	-1.42658929208844	-2.11310844444413	0.543369238581748	1
Merged-chr5-64224917-3	chr5	64224812	64225012	+	771.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019636, intron 2 of 19)	intron (NM_019636, intron 2 of 19)	-5445.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-59551230-4	chr9	59551112	59551312	+	971.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010421, intron 1 of 13)	intron (NM_010421, intron 1 of 13)	11672.0	NM_010421	15211.0	Mm.2284	NM_010421	ENSMUSG00000025232	Hexa	Hex-1	hexosaminidase A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-10731518-2	chr3	10731411	10731611	+	640.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	-291381.0	NM_001127191	74718.0	Mm.440548	NM_029068	ENSMUSG00000027534	Snx16	4930522N22Rik|AI117577|AI747675	sorting nexin 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-97371652-4	chr7	97371591	97371791	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199035)	promoter-TSS (NM_199035)	74.0	NM_199035	381903.0	Mm.279683	NM_199035	ENSMUSG00000035704	Alg8	AI447372|Gm1089	asparagine-linked glycosylation 8 (alpha-1,3-glucosyltransferase)	protein-coding	5.0202264927029	4.51812684504468	5.75347357900433	4.75743578341642	5.7753674842693	4.67343145995005	6.07741867774441	5.77499341343091	0.658392444550922	0.067730471619826	0.390265797169282
Merged-chr10-69183742-2	chr10	69183642	69183842	+	597.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-24810.0	NM_001252636	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-3397725-2	chr8	3397625	3397825	+	581.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133962, intron 1 of 19)	RSINE1|SINE|B4	4717.0	NM_133962	102098.0	Mm.170461	NM_133962	ENSMUSG00000004568	Arhgef18	AI467246|D030053O22Rik	rho/rac guanine nucleotide exchange factor (GEF) 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131867252-4	chr1	131867141	131867341	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144875)	promoter-TSS (NM_144875)	-36.0	NM_144875	226422.0	Mm.34027	NM_144875	ENSMUSG00000026433	Rab29	Rab7l1	RAB29, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28313461-4	chr17	28313389	28313589	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163820)	promoter-TSS (NM_001163820)	-41.0	NR_028297	72775.0	Mm.201859	NM_028348	ENSMUSG00000007570	Fance	2810451D06Rik|AI415634|AW209126	Fanconi anemia, complementation group E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-65380736-4	chr3	65380632	65380832	+	894.1749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_026155, exon 5 of 5)	3' UTR (NM_026155, exon 5 of 5)	11821.0	NM_026155	67437.0	Mm.232728	NM_026155	ENSMUSG00000027828	Ssr3	0610038P07Rik|AL022999|AU022074|AW553833|TRAPG	signal sequence receptor, gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-57339643-4	chr16	57339558	57339758	+	995.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025599, intron 1 of 9)	intron (NM_025599, intron 1 of 9)	-13619.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-37554168-4	chr19	37554120	37554320	+	911.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175353, intron 1 of 21)	intron (NM_175353, intron 1 of 21)	3802.0	NM_175353	107371.0	Mm.24865	NM_175353	ENSMUSG00000053799	Exoc6	4833405E05Rik|AW413330|C430002C19|Sec15|Sec15l1|hbd|msec15	exocyst complex component 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-50779201-3	chr15	50779131	50779331	+	851.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310485, intron 5 of 7)	intron (NM_001310485, intron 5 of 7)	109818.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	-0.0936503865612229	0.446081489300276	-0.0863922283204002	-0.0891413587395181	0.323021222258222	0.23297966880249	-0.0856017849561249	-0.0886628775169408	0.304237521208128	0.897313055614504	1
Merged-chr19-9956809-2	chr19	9956709	9956909	+	594.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23791.0	NR_073181	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-31949502-4	chr12	31949402	31949602	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177993, intron 1 of 8)	CpG	743.0	NM_177993	73389.0	Mm.390461	NM_153198	ENSMUSG00000002996	Hbp1	1700058O05Rik|BE629963|C330012F01Rik|C86454	high mobility group box transcription factor 1	protein-coding	5.41572788733275	4.29858397708593	5.40405958839169	3.54642057975599	5.02806259469174	3.92702417177574	5.54310631350019	4.51465495800214	0.00600634791744399	0.989891026570162	0.998431161219273
Merged-chr18-36021816-2	chr18	36021716	36021916	+	736.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001167891, intron 8 of 9)	intron (NM_001167891, intron 8 of 9)	56986.0	NR_110349	74002.0	Mm.196944	NM_028707	ENSMUSG00000024347	Psd2	6330404E20Rik|AW125584|EFA6C	pleckstrin and Sec7 domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-3787712-3	chr5	3787620	3787820	+	937.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003909, intron 1 of 19)	MER68-int|LTR|ERVL	-14933.0	NM_001289529	70797.0	Mm.130148	NM_001003909	ENSMUSG00000040351	Ankib1	2310061P20Rik|4631416I11Rik|AW494740|C80642|mKIAA1386	ankyrin repeat and IBR domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6921330-4	chr19	6921222	6921422	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007953, intron 1 of 6)	intron (NM_007953, intron 1 of 6)	486.0	NM_007953	26379.0	Mm.386776	NM_007953	ENSMUSG00000024955	Esrra	ERRalpha|Err1|Estrra|Nr3b1	estrogen related receptor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81406836-6	chr10	81406664	81406864	+	801.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026756, intron 6 of 8)	intron (NM_026756, intron 6 of 8)	-2811.0	NR_152732	102634174.0	Mm.392213	NR_152732	ENSMUSG00000085327	Gm16104	-	predicted gene 16104	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-95604037-4	chr1	95603958	95604158	+	847.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009183, intron 4 of 4)	L1_Mus2|LINE|L1	63536.0	NM_009183	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-94282785-2	chr6	94282672	94282872	+	591.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_001029850, intron 1 of 23)	intron (NM_001029850, intron 1 of 23)	1145.0	NM_010367	14924.0	Mm.217216	NM_010367	ENSMUSG00000045095	Magi1	AIP3|BAP1|Baiap1|Gukmi1|MAGI1c|Magi-1|TNRC19|WWP3|mKIAA4129	membrane associated guanylate kinase, WW and PDZ domain containing 1	protein-coding	-0.0946434653646452	-0.0698761231825084	-0.0778582516786103	-0.0841025984166292	-0.093061146083558	1.00119183697467	-0.076087121585762	0.77443828497371	4.30372656476779	0.0551683496041459	1
Merged-chr2-174075434-2	chr2	174075334	174075534	+	861.1666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1617.0	NM_172675	228960.0	Mm.277977	NM_172675	ENSMUSG00000027522	Stx16	4930401D03|5430410K23Rik|6330500A18Rik|AI648908|AW553605|Syn16	syntaxin 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-65113011-4	chr13	65112954	65113154	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133680)	promoter-TSS (NM_133680)	-72.0	NM_133680	66631.0	Mm.239196	NM_133680	ENSMUSG00000038212	Mfsd14b	5730414C17Rik|AU045608|AW539692|Hiatl1	major facilitator superfamily domain containing 14B	protein-coding	1.96792563563468	1.23550042287366	1.90574555984366	1.7251451918463	1.77873693991571	1.9843569567011	2.04082512078804	2.17744114206701	0.750558435205375	0.456805577134418	0.919264728457769
Merged-chr5-121399735-2	chr5	121399628	121399828	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172722, intron 1 of 23)	B1F2|SINE|Alu	1746.0	NM_172722	231713.0	Mm.33919	NM_172722	ENSMUSG00000042719	Naa25	4833422K13Rik|A630046C11|AI450868|C330023M02Rik|Mdm20	N(alpha)-acetyltransferase 25, NatB auxiliary subunit	protein-coding	3.13285541066751	2.91506441660907	3.45974039650413	3.21919982046047	3.00454898601836	3.44370048255818	2.95607558373352	2.48527037237936	-0.320275666552886	0.607671207064985	0.974576632476413
Merged-chr8-46741181-4	chr8	46741048	46741248	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152560, intron 1 of 7)	CpG	1403.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-107379510-2	chr3	107379410	107379610	+	577.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46221.0	NM_001045807	229700.0	Mm.27966	NM_001045807	ENSMUSG00000048109	Rbm15	C230088J01Rik|mKIAA1438	RNA binding motif protein 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-51789623-4	chr3	51789540	51789740	+	885.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 2 of 4)	intron (NM_001004176, intron 2 of 4)	128461.0	NM_001310482	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-20752346-2	chr15	20752246	20752446	+	690.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	-85596.0	NM_022816	64833.0	Mm.352763	NM_022816	ENSMUSG00000047565	Acot10	Acate3|MT-ACT48|p48	acyl-CoA thioesterase 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-45859297-3	chr10	45859103	45859303	+	564.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51499.0	NR_040624	320363.0	Mm.123343	NR_040624	ENSMUSG00000110874	D030045P18Rik	-	RIKEN cDNA D030045P18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-29214984-2	chr6	29214884	29215084	+	648.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001302933, intron 1 of 14)	intron (NM_001302933, intron 1 of 14)	1380.0	NM_001302933	23917.0	Mm.260707	NM_011829	ENSMUSG00000003500	Impdh1	B930086D20Rik|IMPDH-I	inosine monophosphate dehydrogenase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-44586213-3	chr11	44586119	44586319	+	866.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_126460)	promoter-TSS (NR_126460)	-98.0	NR_126460	75389.0	Mm.261421	NR_126460	ENSMUSG00000086501	4930597A21Rik	-	RIKEN cDNA 4930597A21 gene	ncRNA	3.32028133087967	2.67039081947923	1.41865034790337	1.37907949823377	3.29585383543213	3.11959136167897	2.31579668194061	2.91885612181498	0.865534148178354	0.340356419415322	0.840985121439433
Merged-chr11-55148962-4	chr11	55148825	55149025	+	879.7666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172258, intron 2 of 10)	(TG)n|Simple_repeat|Simple_repeat	2781.0	NM_172258	215332.0	Mm.87054	NM_172258	ENSMUSG00000049491	Slc36a3	PAT3|TRAMD2|tramdorin2	solute carrier family 36 (proton/amino acid symporter), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34973195-2	chr17	34973095	34973295	+	578.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013558, intron 1 of 1)	intron (NM_013558, intron 1 of 1)	492.0	NM_013558	15482.0	Mm.14287	NM_013558	ENSMUSG00000007033	Hspa1l	Hsc70t|Msh5	heat shock protein 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-11455145-3	chr11	11455024	11455224	+	760.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015785, intron 2 of 7)	L1M4|LINE|L1	7295.0	NM_015785	53604.0	Mm.9500	NM_015785	ENSMUSG00000020193	Zpbp	4930486K01Rik|Iam38|Sp38	zona pellucida binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-12222188-2	chr12	12222088	12222288	+	734.666687	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-39951.0	NM_029758	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	2.18697904479263	1.67438240044001	1.17319706559786	1.15154017627269	2.499517828666	2.02233213111278	1.95266542130112	2.48823869153129	1.67916284058693	0.115683947707616	0.532880472714093
Merged-chr18-84085881-3	chr18	84085785	84085985	+	901.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001081300, exon 1 of 2)	5' UTR (NM_001081300, exon 1 of 2)	677.0	NM_001081300	110796.0	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-35569000-4	chr6	35568919	35569119	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29131.0	NM_008098	14489.0	Mm.182746	NM_008098	ENSMUSG00000029840	Mtpn	5033418D15Rik|Gcdp|V1	myotrophin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-78631577-2	chr8	78631477	78631677	+	709.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001009981, intron 5 of 10)	intron (NM_001009981, intron 5 of 10)	122249.0	NM_001282108	76775.0	Mm.334631	NM_029736	ENSMUSG00000031684	Slc10a7	2410193C02Rik|P7	solute carrier family 10 (sodium/bile acid cotransporter family), member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117307201-2	chr11	117307101	117307301	+	773.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113486, intron 3 of 11)	intron (NM_001113486, intron 3 of 11)	-24514.0	NM_017380	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-118712503-4	chr7	118712414	118712614	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360794)	promoter-TSS (NM_001360794)	-29.0	NM_001360794	101565.0	Mm.23279	NM_182995	ENSMUSG00000033904	Ccp110	6330503K22Rik|AA415922|AI427129|AW557948|CP110|cep110	centriolar coiled coil protein 110	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-6349586-1	chr4	6349486	6349686	+	684.0	f1_c57bl6.idr	Intergenic	MER44B|DNA|TcMar-Tigger	-16094.0	NM_016807	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67721967-2	chr10	67721853	67722053	+	553.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-149994.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124415506-1	chr6	124415406	124415606	+	622.0	f0_c57.idr	promoter-TSS (NM_001277330)	promoter-TSS (NM_001277330)	349.0	NM_001360570	19305.0	Mm.22418	NM_008995	ENSMUSG00000005069	Pex5	AW212715|ESTM1|PTS1-BP|PTS1R|PXR1P|Pxr1|X83306	peroxisomal biogenesis factor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-57335434-4	chr17	57335321	57335521	+	974.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-23265.0	NM_001355723	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-31256869-2	chr15	31256769	31256969	+	996.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146057, intron 2 of 3)	intron (NM_146057, intron 2 of 3)	32484.0	NM_146057	223453.0	Mm.222867	NM_146057	ENSMUSG00000039168	Dap	4921531N22Rik|AI789753|AU040360	death-associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97341736-2	chr6	97341634	97341834	+	888.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 8 of 23)	intron (NM_145148, intron 8 of 23)	-88954.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-125555212-2	chr7	125555099	125555299	+	987.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001008700, intron 1 of 10)	MIRc|SINE|MIR	2917.0	NM_001008700	16190.0	Mm.233802	NM_010557	ENSMUSG00000030748	Il4ra	CD124|Il4r	interleukin 4 receptor, alpha	protein-coding	3.3047630063756	3.46392079356358	3.26212506030145	3.77851429162287	2.49901120158621	3.20035983627908	1.96724169195916	3.74237798502696	-0.707027944131535	0.285963931907821	0.79047889608285
Merged-chr7-97782019-4	chr7	97781904	97782104	+	998.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	-6537.0	NM_001357365	18479.0	Mm.260227	NM_011035	ENSMUSG00000030774	Pak1	AW045634|PAK-1|Paka	p21 (RAC1) activated kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-138980996-1	chr4	138980896	138981096	+	646.0	f0_c57.idr	intron (NM_029857, intron 2 of 16)	ORR1F|LTR|ERVL-MaLR	8091.0	NM_029857	77056.0	Mm.122336	NM_029857	ENSMUSG00000041143	Tmco4	4632413C14Rik|AI430825	transmembrane and coiled-coil domains 4	protein-coding	1.11244358462926	1.50415885020346	0.969563996157534	1.29154811363674	0.755247115540378	0.62369272188638	0.81256482434698	0.604111699597163	-3.10587983668069	0.0492538647203196	0.323040015805974
Merged-chr1-43811169-4	chr1	43811067	43811267	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026430, intron 1 of 14)	intron (NM_026430, intron 1 of 14)	16541.0	NM_026430	67883.0	Mm.387202	NM_026430	ENSMUSG00000057363	Uxs1	1600025I13Rik|AI451869|AI649125|AW550562	UDP-glucuronate decarboxylase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153032342-3	chr2	153032190	153032390	+	840.2777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001011732, exon 1 of 3)	exon (NM_001011732, exon 1 of 3)	438.0	NM_001011732	228787.0	Mm.376111	NM_001011732	ENSMUSG00000042631	Xkr7	AY534253	X-linked Kx blood group related 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34611748-2	chr17	34611697	34611897	+	987.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001163379, exon 6 of 7)	exon (NM_001163379, exon 6 of 7)	2783.0	NM_018862	55979.0	Mm.8684	NM_018862	ENSMUSG00000034254	Agpat1	1-AGP|1-AGPAT|AW047140	1-acylglycerol-3-phosphate O-acyltransferase 1 (lysophosphatidic acid acyltransferase, alpha)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-30587687-4	chr16	30587614	30587814	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178069)	promoter-TSS (NM_178069)	-125.0	NM_178069	224092.0	Mm.567	NM_178069	ENSMUSG00000022538	Lsg1	5830465I20|AA409273|D16Bwg1547e	large 60S subunit nuclear export GTPase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-62220933-1	chr18	62220833	62221033	+	557.0	f1_c57bl6.idr	Intergenic	L1MA10|LINE|L1	40833.0	NM_001013754	225609.0	Mm.296917	NM_001013754	ENSMUSG00000054589	Gm9949	EG225609	predicted gene 9949	protein-coding	1.39152593570818	0.825814181940849	0.435583534891042	0.758998605867667	0.579668382232591	0.446477772636129	0.437552781095662	1.01141339440357	-1.36558287930341	0.419573551215453	1
Merged-chr7-47084210-2	chr7	47084110	47084310	+	570.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_106023)	promoter-TSS (NR_106023)	-986.0	NR_106023	102465639.0		NR_106023	ENSMUSG00000098960	Mir7056	Gm27696|mmu-mir-7056	microRNA 7056	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-155055978-2	chr1	155055878	155056078	+	750.416626	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	27286.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-57862474-2	chr18	57862374	57862574	+	876.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR40b|LTR|ERVL	-16204.0	NM_009194	20496.0	Mm.399997	NM_009194	ENSMUSG00000024597	Slc12a2	9330166H04Rik|Nkcc1|mBSC2|sy-ns	solute carrier family 12, member 2	protein-coding	-1.29633872064033	-1.26720680975202	-1.27768629845203	-1.28629446248818	-0.70879630402184	-1.2649358608345	-1.2753139719142	-1.28475360524138	2.50884260628271	0.468217847016783	1
Merged-chr1-36988615-3	chr1	36988509	36988709	+	947.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-49082.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-60736817-3	chr18	60736722	60736922	+	645.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001348146, intron 1 of 6)	intron (NM_001348146, intron 1 of 6)	-3681.0	NM_001348102	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	-1.3626018698718	-1.47729634374731	-1.48668821410043	-1.49440297604352	-1.35881514386716	-1.47526108626267	-1.48456210051642	-1.34524504037929	0.708829615024164	0.827665353238805	1
Merged-chr19-10272367-2	chr19	10272267	10272467	+	544.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198114, intron 1 of 19)	intron (NM_198114, intron 1 of 19)	-31619.0	NM_001033481	225908.0	Mm.329716	NM_001033481	ENSMUSG00000036098	Myrf	6030439E18|Gm1804|Gm98|Mrf	myelin regulatory factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-16221411-3	chr6	16221309	16221509	+	667.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MCa|LINE|L1	500748.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-3026935-8	chr9	3026800	3027000	+	907.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GSAT_MM|Satellite|Satellite	11843.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45128943-4	chr7	45128868	45129068	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009438)	promoter-TSS (NM_009438)	-223.0	NM_009438	22121.0	Mm.180458	NM_009438	ENSMUSG00000074129	Rpl13a	1810026N22Rik|Tstap198-7|tum-antigen	ribosomal protein L13A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-8789966-3	chr3	8789856	8790056	+	709.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVB2_1A-I_MM-int|LTR|ERVK	-122918.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-52932921-2	chr2	52932821	52933021	+	685.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	L1M4|LINE|L1	75053.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-33085805-4	chr13	33085718	33085918	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173052, intron 2 of 6)	intron (NM_173052, intron 2 of 6)	1715.0	NM_173052	282663.0	Mm.314490	NM_173052	ENSMUSG00000051029	Serpinb1b	6330533H24Rik|EIB|Serpin1b1|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 1b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-138843567-1	chr1	138843467	138843667	+	579.0	f0_balb.idr	intron (NM_010714, intron 2 of 6)	intron (NM_010714, intron 2 of 6)	-1123.0	NM_001025565	16876.0	Mm.250732	NM_010714	ENSMUSG00000019230	Lhx9	3110009O07Rik|BB104635|LH2B	LIM homeobox protein 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-153944649-4	chr3	153944575	153944775	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007382)	promoter-TSS (NM_007382)	-32.0	NM_007382	11364.0	Mm.10530	NM_007382	ENSMUSG00000062908	Acadm	AU018656|MCAD	acyl-Coenzyme A dehydrogenase, medium chain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4144091-4	chr19	4143985	4144185	+	958.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_206973, exon 2 of 2)	3' UTR (NM_206973, exon 2 of 2)	4286.0	NM_206973	269053.0	Mm.131677	NM_206973	ENSMUSG00000044724	Gpr152	A930009H15Rik|Gm673	G protein-coupled receptor 152	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-121852211-1	chr3	121852111	121852311	+	820.0	f0_balb.idr	Intergenic	Intergenic	-36909.0	NM_008991	19299.0	Mm.399042	NM_008991	ENSMUSG00000028127	Abcd3	AI313901|AU018866|AW146054|PMP68|PMP70|Pxmp1	ATP-binding cassette, sub-family D (ALD), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-125402758-2	chr5	125402660	125402860	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12743.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-29329742-2	chr6	29329642	29329842	+	735.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_207258, intron 4 of 6)	intron (NM_207258, intron 4 of 6)	10602.0	NM_001289664	330277.0	Mm.87624	NM_207258	ENSMUSG00000039742	Fam71f1	GARI-L1|Gm764|NYD-SP18	family with sequence similarity 71, member F1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-110627444-4	chr7	110627315	110627515	+	949.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009627)	promoter-TSS (NM_009627)	-242.0	NM_009627	11535.0	Mm.1408	NM_009627	ENSMUSG00000030790	Adm	AM	adrenomedullin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16255601-4	chr7	16255510	16255710	+	985.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001173550, intron 1 of 1)	B3A|SINE|B2	3728.0	NM_001173550	12273.0	Mm.247623	NM_007577	ENSMUSG00000049130	C5ar1	C5aR|C5r1|Cd88|D7Msu1	complement component 5a receptor 1	protein-coding	0.0434167756309831	-0.496267531085851	-0.499971334865586	-0.502823233414139	0.0546277025787766	-0.495431500287674	-0.499155146778299	-0.502325373264262	0.0419527451125213	0.988073760716967	1
Merged-chr8-79160070-4	chr8	79159970	79160170	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001294279, intron 8 of 14)	RCHARR1|DNA|hAT-Charlie	88513.0	NM_026315	67687.0	Mm.178707	NM_026315	ENSMUSG00000031682	1700011L22Rik	-	RIKEN cDNA 1700011L22 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-40287622-4	chr4	40287523	40287723	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-8202.0	NM_001033305	230075.0	Mm.1103	NM_001033305	ENSMUSG00000071014	Ndufb6	CI-B17|Gm137	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-107510520-4	chr11	107510415	107510615	+	879.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30987.0	NM_025894	66997.0	Mm.491171	NM_025894	ENSMUSG00000020720	Psmd12	1500002F15Rik|AI480719|P55	proteasome (prosome, macropain) 26S subunit, non-ATPase, 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45459875-4	chr7	45459771	45459971	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010240)	promoter-TSS (NM_010240)	15.0	NM_010240	14325.0	Mm.30357	NM_010240	ENSMUSG00000050708	Ftl1	Ftl|Ftl-1|L-ferritin	ferritin light polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19460807-2	chr7	19460707	19460907	+	599.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	U1|snRNA|snRNA	-2313.0	NM_172279	232944.0	Mm.260504	NM_172279	ENSMUSG00000030397	Mark4	2410090P21Rik|C79806|Markl1	MAP/microtubule affinity regulating kinase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-50439023-4	chr3	50438911	50439111	+	808.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011990, intron 1 of 11)	intron (NM_011990, intron 1 of 11)	4602.0	NM_011990	26570.0	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	2.90413598448791	2.28179087825631	1.48724920274441	3.72237493139997	2.56460511214204	2.29976296464876	2.9012451519291	3.54083434905631	0.0875209214533357	0.916301150976764	0.998431161219273
Merged-chr17-24529323-3	chr17	24529218	24529418	+	865.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_045289)	TTS (NR_045289)	1067.0	NR_045289	75614.0	Mm.440235	NR_045289	ENSMUSG00000093565	Rab26os	2610019E17Rik	RAB26, member RAS oncogene family, opposite strand	ncRNA	2.74606222460478	3.17533336085486	3.30212600615102	1.49659271210114	2.34932637452331	3.10643686336605	3.09319164865896	2.59872040402238	-0.0454061662967713	0.954053510693859	0.998431161219273
Merged-chr7-92873524-2	chr7	92873424	92873624	+	948.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355126, intron 1 of 5)	intron (NM_001355126, intron 1 of 5)	723.0	NM_001355126	74041.0	Mm.26468	NM_028729	ENSMUSG00000030641	Ddias	4632434I11Rik|noxin	DNA damage-induced apoptosis suppressor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-77917363-4	chr15	77917233	77917433	+	722.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019913, intron 3 of 3)	intron (NM_019913, intron 3 of 3)	11661.0	NM_019913	56551.0	Mm.291917	NM_019913	ENSMUSG00000005354	Txn2	2510006J11Rik|AI788873|Trx2	thioredoxin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-119966394-3	chr4	119966299	119966499	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010657, intron 1 of 8)	intron (NM_010657, intron 1 of 8)	151721.0	NM_010657	16656.0	Mm.302758	NM_010657	ENSMUSG00000028634	Hivep3	2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3	human immunodeficiency virus type I enhancer binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-174222347-2	chr1	174222284	174222484	+	863.0	f0_c57.idr|f1_c57bl6.idr	intron (NM_011465, intron 36 of 51)	MTD|LTR|ERVL-MaLR	28592.0	NM_146715	258710.0	Mm.377647	NM_146715	ENSMUSG00000050788	Olfr419	MOR267-6	olfactory receptor 419	protein-coding	0.786173628346	0.489221132163076	0.47698030191201	1.72228562595503	0.453498583552346	0.491947276091389	1.29382113327912	0.9955477080394	-0.546973205210594	0.747691487757852	0.998431161219273
Merged-chr6-87335846-2	chr6	87335746	87335946	+	766.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_054041)	promoter-TSS (NM_054041)	-71.0	NM_054041	69538.0	Mm.232525	NM_054041	ENSMUSG00000033420	Antxr1	2310008J16Rik|2810405N18Rik|Antrx1|Tem8	anthrax toxin receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-133021328-6	chr2	133021261	133021461	+	814.888916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-75325.0	NM_198029	241639.0	Mm.209784	NM_198029	ENSMUSG00000027356	Fermt1	5830467P10Rik|Kindlin-1	fermitin family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-79983472-4	chr12	79983386	79983586	+	849.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47222.0	NR_131074	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-30661147-2	chr10	30661047	30661247	+	616.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358842, intron 10 of 14)	intron (NM_001358842, intron 10 of 14)	-5280.0	NM_001111267	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-86452637-3	chr10	86452521	86452721	+	622.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013722, intron 2 of 13)	MER91B|DNA|hAT-Tip100	46275.0	NM_001164495	27204.0	Mm.394931	NM_013722	ENSMUSG00000059602	Syn3	-	synapsin III	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-122925294-4	chr7	122925207	122925407	+	859.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	45152.0	NR_045614	73951.0	Mm.389936	NR_045614		4930413G21Rik	-	RIKEN cDNA 4930413G21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-59369626-3	chr10	59369530	59369730	+	886.138916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001316371, exon 14 of 15)	exon (NM_001316371, exon 14 of 15)	-34055.0	NM_023530	69836.0	Mm.30268	NM_023530	ENSMUSG00000009646	Pla2g12b	2010002E04Rik|Fksg71|Pla2g13|hlb218	phospholipase A2, group XIIB	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-48193307-2	chr17	48193207	48193407	+	590.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26050.0	NM_178796	328830.0	Mm.470939	NM_178796	ENSMUSG00000043939	A530064D06Rik	Trem4|pdctrem	RIKEN cDNA A530064D06 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-79330281-4	chr18	79330186	79330386	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-220895.0	NM_053099	240427.0	Mm.312871	NM_053099	ENSMUSG00000024548	Setbp1	C130092E12|Seb|mKIAA0437	SET binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-118815003-4	chr10	118814893	118815093	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1E2|LTR|ERVL-MaLR	53910.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-78442228-2	chr10	78442128	78442328	+	950.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172134, intron 9 of 10)	intron (NM_172134, intron 9 of 10)	2929.0	NR_105873	102466762.0		NR_105873	ENSMUSG00000098279	Mir6908	Gm27827|mmu-mir-6908	microRNA 6908	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65581139-4	chr9	65581031	65581231	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1044.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	5.7663310888001	5.54761835590889	5.87209677209163	5.71699027365398	5.25190978785361	5.06310093054354	5.51256635280646	5.47764372504227	-0.445994297227083	0.0913158382075075	0.467444822034935
Merged-chr14-45664464-4	chr14	45664337	45664537	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(A)n|Simple_repeat|Simple_repeat	-6294.0	NM_001042719	114874.0	Mm.121918	NM_176845	ENSMUSG00000037697	Ddhd1	Mir5131|PA-PLA1	DDHD domain containing 1	protein-coding	6.01254625946975	5.63057557738108	5.15735222094705	5.44741098583513	4.72175479907977	4.98428183608872	5.56211525505174	4.64394639083962	-0.671042427155006	0.0390554474165056	0.281738952397138
Merged-chr10-95361384-4	chr10	95361287	95361487	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045337, intron 2 of 2)	intron (NR_045337, intron 2 of 2)	25111.0	NR_045337	69629.0	Mm.250542	NR_045337	ENSMUSG00000100550	2310039L15Rik	A53T-syn|G2-3|PrPsynA53T|Tg(Prnp-SNCA*A53T)23Mkle	RIKEN cDNA 2310039L15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-102012016-2	chr7	102011916	102012116	+	547.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_133947, exon 20 of 25)	exon (NM_133947, exon 20 of 25)	6139.0	NM_010531	16068.0	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28584079-4	chr7	28583982	28584182	+	998.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027470, intron 1 of 9)	L2b|LINE|L2	14102.0	NM_027470	70584.0	Mm.21876	NM_027470	ENSMUSG00000030602	Pak4	5730488L07Rik|AW555722|mKIAA1142	p21 (RAC1) activated kinase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-96720812-3	chr9	96720699	96720899	+	612.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359959)	promoter-TSS (NM_001359959)	-949.0	NM_001359959	245007.0	Mm.485954	NM_175537	ENSMUSG00000040433	Zbtb38	A930014K01Rik|CIBZ	zinc finger and BTB domain containing 38	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-60284463-4	chr10	60284342	60284542	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146124)	promoter-TSS (NM_001146124)	-19.0	NM_001146124	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-43492895-4	chr11	43492802	43493002	+	768.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18596.0	NM_026979	69183.0	Mm.390374	NM_026979	ENSMUSG00000046491	C1qtnf2	1810033K05Rik|CTRP2	C1q and tumor necrosis factor related protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-4210172-5	chr12	4210072	4210272	+	822.733337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159537, intron 17 of 21)	intron (NM_001159537, intron 17 of 21)	23793.0	NM_134046	52504.0	Mm.70546	NM_134046	ENSMUSG00000020652	Cenpo	2810429O05Rik|8430427C03Rik|D12Ertd482e	centromere protein O	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-19992032-2	chr10	19991945	19992145	+	728.5	f0_balb.idr|f1_c57bl6.idr	intron (NM_008580, intron 1 of 29)	intron (NM_008580, intron 1 of 29)	57519.0	NM_008580	26408.0	Mm.6595	NM_008580	ENSMUSG00000071369	Map3k5	7420452D20Rik|ASK|ASK1|MAPKKK5|Mekk5	mitogen-activated protein kinase kinase kinase 5	protein-coding	1.21565373102433	1.08385252348413	1.8241659374137	2.43485396365137	1.80506831155341	2.37384376139142	1.97021960589797	1.04259931015842	0.29816068584218	0.800257220713271	0.998431161219273
Merged-chr6-134795350-1	chr6	134795250	134795450	+	691.0	f1_c57bl6.idr	promoter-TSS (NR_151455)	promoter-TSS (NR_151455)	-300.0	NR_151455	105242798.0	Mm.398227	NR_151454		1700055D16Rik	-	RIKEN cDNA 1700055D16 gene	ncRNA	0.672665943129493	-0.206133852176114	-0.211585788964535	-0.215809149841912	0.385335079247801	-0.204908257831483	-0.210381210849647	-0.215070244540909	-0.787392709509075	0.754602388917587	1
Merged-chr16-33895398-2	chr16	33895299	33895499	+	719.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 5 of 14)	B1_Mus1|SINE|Alu	65734.0	NM_001145884	16419.0	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-51807776-1	chr11	51807676	51807876	+	560.0	f1_balb.idr	Intergenic	B3A|SINE|B2	44113.0	NM_025535	66397.0	Mm.196592	NM_025535	ENSMUSG00000020386	Sar1b	2310075M17Rik|2900019I22Rik|CMRD|Sara1b|Sara2|Sarb	secretion associated Ras related GTPase 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-70112989-4	chr12	70112889	70113089	+	980.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_104397)	promoter-TSS (NR_104397)	-954.0	NR_104397	18080.0	Mm.244047	NM_008697	ENSMUSG00000021068	Nin	3110068G20Rik|AI385615|AU024711|mKIAA1565	ninein	protein-coding	2.4604910872599	2.88336315719625	3.05231237616371	1.39166768309984	2.67247337858445	3.40630049915129	2.69988126499539	1.66580397382551	0.308172759850426	0.725780636372934	0.998431161219273
Merged-chr2-152922464-2	chr2	152922364	152922564	+	541.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001081044, exon 12 of 12)	3' UTR (NM_001081044, exon 12 of 12)	10744.0	NM_010226	14239.0	Mm.205798	NM_010226	ENSMUSG00000074676	Foxs1	FREAC10|Fkh3|Fkhl18	forkhead box S1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-145284506-4	chr7	145284407	145284607	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_132642)	promoter-TSS (NR_132642)	-496.0	NR_132642	233979.0	Mm.102235	NM_146206	ENSMUSG00000048677	Tpcn2	D830047E22Rik|Gm35086	two pore segment channel 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-77825547-2	chr18	77825447	77825647	+	905.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013831, intron 1 of 14)	intron (NM_013831, intron 1 of 14)	-29157.0	NR_152167	619308.0	Mm.490456	NM_001033812		F830208F22Rik	-	RIKEN cDNA F830208F22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-102272581-3	chr4	102272497	102272697	+	840.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177983, intron 1 of 5)	intron (NM_001177983, intron 1 of 5)	17658.0	NM_019840	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-84417294-4	chr12	84417189	84417389	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025525)	promoter-TSS (NM_025525)	89.0	NM_025525	66381.0	Mm.24846	NM_025525	ENSMUSG00000098134	Rnf113a2	2310020H19Rik|AI426758|Rnf113a	ring finger protein 113A2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-55741545-4	chr4	55741436	55741636	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-209061.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-74370098-4	chr1	74370017	74370217	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001033345)	TTS (NM_001033345)	-5086.0	NM_013612	18173.0	Mm.2913	NM_013612	ENSMUSG00000026177	Slc11a1	Bcg|Ity|Ity1|Lsh|Nramp|Nramp1|ity	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-54864175-4	chr14	54864060	54864260	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177705)	promoter-TSS (NM_001177705)	-2.0	NM_001177705	239099.0	Mm.280994	NM_183174	ENSMUSG00000057156	Homez	mKIAA1443	homeodomain leucine zipper-encoding gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118238173-3	chr11	118238121	118238321	+	686.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	10371.0	NM_001112699	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118587729-2	chr9	118587629	118587829	+	813.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18980.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-87761859-18	chr11	87762028	87762228	+	940.6239619999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172449, intron 1 of 31)	intron (NM_172449, intron 1 of 31)	1587.0	NM_172449	207777.0	Mm.342019	NM_172449	ENSMUSG00000034156	Tspoap1	Bzrap1|D230016K05|PRAX-1|mKIAA0612	TSPO associated protein 1	protein-coding	2.67066805071466	1.61713573550077	1.28211041168583	2.45786253147858	3.26951768378636	2.39554003624278	1.29140380246619	3.04959901151837	1.13076927590863	0.259502967264821	0.759764910015451
Merged-chr11-98952061-3	chr11	98951977	98952177	+	849.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009024, intron 2 of 8)	B2_Mm2|SINE|B2	-8394.0	NM_001176528	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127646488-2	chr7	127646388	127646588	+	887.900024	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TTTTG)n|Simple_repeat|Simple_repeat	-31216.0	NR_155451	320683.0	Mm.156718	NM_177226	ENSMUSG00000045639	Zfp629	9330199A09Rik|Znf629	zinc finger protein 629	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-46670294-3	chr13	46670214	46670414	+	740.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033192, intron 1 of 4)	intron (NM_001033192, intron 1 of 4)	792.0	NM_001033192	97863.0	Mm.275934	NM_001033192	ENSMUSG00000069237	Fam8a1	C78339	family with sequence similarity 8, member A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3674305-2	chr19	3674205	3674405	+	726.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008513, intron 1 of 22)	intron (NM_008513, intron 1 of 22)	12259.0	NM_008513	16973.0	Mm.274581	NM_008513	ENSMUSG00000024913	Lrp5	BMND1|HBM|LR3|LRP7|OPPG|mKIAA4142	low density lipoprotein receptor-related protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-45544079-2	chr17	45543979	45544179	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001013749, exon 3 of 3)	3' UTR (NM_001013749, exon 3 of 3)	5598.0	NM_001013749	210573.0	Mm.329064	NM_001013749	ENSMUSG00000096847	Tmem151b	Gm323	transmembrane protein 151B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-79955042-4	chr17	79954931	79955131	+	950.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58908.0	NM_001286647	56298.0	Mm.175403	NM_019717	ENSMUSG00000059811	Atl2	2010110I21Rik|AA407293|AV334690|Aip-2|Arl6ip2	atlastin GTPase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36554720-4	chr1	36554622	36554822	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304329, intron 2 of 14)	intron (NM_001304329, intron 2 of 14)	2835.0	NM_001304330	20353.0	Mm.29558	NM_001126047	ENSMUSG00000026121	Sema4c	AI426163|M-Sema F|Semacl1|Semaf|Semai|sema I	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-75853305-2	chr5	75853205	75853405	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	125123.0	NM_010612	16542.0	Mm.285	NM_010612	ENSMUSG00000062960	Kdr	6130401C07|Flk-1|Flk1|Krd-1|Ly73|VEGFR-2|VEGFR2|orv|sVEGFR-2	kinase insert domain protein receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115160706-2	chr11	115160600	115160800	+	742.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001163753, exon 9 of 9)	exon (NM_001163753, exon 9 of 9)	-2641.0	NM_012030	26941.0	Mm.27842	NM_012030	ENSMUSG00000020733	Slc9a3r1	EBP-50|NHE-RF|NHERF-1|NHERF1	solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 1	protein-coding	0.498293824725295	1.17132002235709	0.349169930674728	0.341603641098794	0.887644407452863	1.29234312014578	0.35131799618662	0.342931415453513	0.67613352861508	0.710106765799035	1
Merged-chr11-45754047-4	chr11	45753931	45754131	+	867.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54052.0	NR_045876	100009664.0	Mm.415439	NR_045876		F630206G17Rik	-	RIKEN cDNA F630206G17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-60963000-4	chr8	60962905	60963105	+	950.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007711, intron 1 of 11)	intron (NM_007711, intron 1 of 11)	-8206.0	NM_173876	12725.0	Mm.25263	NM_007711	ENSMUSG00000004319	Clcn3	Clc3	chloride channel, voltage-sensitive 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-120977565-4	chr2	120977516	120977716	+	859.089294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175285, intron 1 of 13)	CpG	554.0	NM_175285	96957.0	Mm.315212	NM_175285	ENSMUSG00000054484	Tmem62	B830009D23Rik|C77355	transmembrane protein 62	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-110978893-3	chr13	110978783	110978983	+	866.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-75037.0	NR_131194	102636142.0	Mm.417611	NR_131194		4930526H09Rik	-	RIKEN cDNA 4930526H09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-63863560-2	chr4	63863460	63863660	+	788.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	AT_rich|Low_complexity|Low_complexity	-2276.0	NM_009403	21949.0	Mm.4664	NM_009403	ENSMUSG00000028362	Tnfsf8	CD153|CD30LG|Cd30l|Tnlg3a	tumor necrosis factor (ligand) superfamily, member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-4662471-2	chr11	4662371	4662571	+	780.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029291, intron 8 of 19)	intron (NM_029291, intron 8 of 19)	24678.0	NM_029291	75452.0	Mm.439906	NM_029291	ENSMUSG00000020412	Ascc2	1700011I11Rik|2610034L15Rik|AI482016|ASC1p100|AW046480	activating signal cointegrator 1 complex subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-149666087-3	chr4	149665985	149666185	+	968.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029837, intron 2 of 23)	ID_B1|SINE|B4	-2769.0	NM_001164052	18707.0	Mm.229108	NM_008840	ENSMUSG00000039936	Pik3cd	2410099E07Rik|2610208K16Rik|AW545373|p110delta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding	0.286442506497471	0.817274823021025	0.889110196669808	0.295912769033922	0.287855081091524	0.827245333710557	0.782468673344012	0.29690596635813	-0.175320271888778	0.926738600483659	1
Merged-chr8-71370845-3	chr8	71370747	71370947	+	899.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029865)	promoter-TSS (NM_029865)	-451.0	NM_029865	77090.0	Mm.440170	NM_029865	ENSMUSG00000002396	Ocel1	9430098E02Rik|AI326022|AI593544	occludin/ELL domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-105328511-3	chr14	105328405	105328605	+	877.944458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	69832.0	NM_001190989	76273.0	Mm.290669	NM_029561	ENSMUSG00000053253	Ndfip2	0710001O20Rik|2810436B12Rik|9130207N19Rik|N4wbp5a|mKIAA1165	Nedd4 family interacting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-57232559-4	chr2	57232450	57232650	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5128.0	NM_001145820	14571.0	Mm.3711	NM_010274	ENSMUSG00000026827	Gpd2	AA408484|AI448216|AU021455|AW494132|GPDH|Gdm1|Gpd-m|Gpdh-m|TISP38	glycerol phosphate dehydrogenase 2, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-24384688-4	chr5	24384577	24384777	+	977.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008713)	TTS (NM_008713)	7466.0	NM_001002897	213948.0	Mm.332252	NM_001002897	ENSMUSG00000038295	Atg9b	Apg912|Apg9l2|Apgdc2|Gm574|Nos3as|eONE|sONE	autophagy related 9B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-45659763-4	chr14	45659670	45659870	+	831.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1627.0	NM_001042719	114874.0	Mm.121918	NM_176845	ENSMUSG00000037697	Ddhd1	Mir5131|PA-PLA1	DDHD domain containing 1	protein-coding	1.70861474666819	1.66528180330548	1.47240903318867	1.43925433371593	1.81068139120477	1.80854871950651	1.48180410191628	1.58002254120407	0.363255712961292	0.731273884487811	0.998431161219273
Merged-chr5-105567805-2	chr5	105567705	105567905	+	729.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_133897, intron 2 of 3)	intron (NM_133897, intron 2 of 3)	48334.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-92791057-2	chr16	92790957	92791157	+	650.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111022, intron 2 of 6)	intron (NM_001111022, intron 2 of 6)	35017.0	NM_001111021	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-61126375-4	chr18	61126252	61126452	+	870.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037859, intron 15 of 21)	intron (NM_001037859, intron 15 of 21)	8884.0	NR_105949	102466212.0		NR_105949	ENSMUSG00000098389	Mir6983	Gm27496|mmu-mir-6983	microRNA 6983	ncRNA	2.10098276023808	1.49391253211836	1.27045988325932	1.2435520861887	2.05062075666646	1.50404527939851	1.4583848146248	1.69099157321044	0.350760908799661	0.752766636163897	0.998431161219273
Merged-chr2-68382596-4	chr2	68382514	68382714	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016866, intron 5 of 17)	intron (NM_016866, intron 5 of 17)	89367.0	NM_016866	53416.0	Mm.198414	NM_016866	ENSMUSG00000027030	Stk39	AW227544|AW556857|DCHT|RF005|Rnl5|SPAK	serine/threonine kinase 39	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-97333576-2	chr7	97333478	97333678	+	622.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039039, intron 1 of 1)	intron (NM_001039039, intron 1 of 1)	1255.0	NM_001039039	622320.0	Mm.334029	NM_001039039	ENSMUSG00000044952	Kctd21	EG622320	potassium channel tetramerisation domain containing 21	protein-coding	0.872274425440125	0.583103464369481	0.570609236321538	1.07166214524711	1.41116729486377	1.73778340250641	0.573385173249256	0.765982522242223	1.84181561294593	0.237613406791304	0.734133644982506
Merged-chr11-116114058-2	chr11	116113958	116114158	+	653.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-3823.0	NM_172570	217333.0	Mm.347770	NM_172570	ENSMUSG00000020773	Trim47	2210023F24Rik	tripartite motif-containing 47	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-83846474-3	chr17	83846386	83846586	+	696.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025325, intron 1 of 9)	intron (NM_025325, intron 1 of 9)	304.0	NM_025325	107766.0	Mm.30100	NM_025325	ENSMUSG00000000673	Haao	0610007K21Rik|0610012J07Rik|3-HAO|3-HAOxase|3HAO	3-hydroxyanthranilate 3,4-dioxygenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-53462867-2	chr3	53462767	53462967	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173382)	promoter-TSS (NM_173382)	391.0	NM_172501	212114.0	Mm.85744	NM_172501	ENSMUSG00000042997	Nhlrc3	4833441N19|8030451K01Rik|mKIAA4083	NHL repeat containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-111289219-3	chr9	111289143	111289343	+	790.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17398.0	NM_175266	77781.0	Mm.209005	NM_175266	ENSMUSG00000046785	Epm2aip1	A930003G21Rik|mKIAA0766	EPM2A (laforin) interacting protein 1	protein-coding	1.65955556933297	1.65582462972619	1.59596359286327	0.922443719320513	1.674493426399	1.18341668038534	1.72534076080903	0.924594179597653	-0.237445682695346	0.853474728438957	0.998431161219273
Merged-chr17-27857154-4	chr17	27857026	27857226	+	978.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080769, intron 1 of 20)	CpG	619.0	NM_001080769	224648.0	Mm.291291	NM_001080769	ENSMUSG00000039512	Uhrf1bp1	1110020K19Rik|AA408674|F830021D11Rik|mKIAA4127	UHRF1 (ICBP90) binding protein 1	protein-coding	2.44807159105425	1.37606532028702	2.92796292084133	1.95868967227535	2.55851477138946	3.05444230374352	2.86966543567696	1.30871949119673	0.587632011516738	0.54381882497094	0.955585568541497
Merged-chr12-71040598-4	chr12	71040494	71040694	+	962.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081195, intron 8 of 23)	PB1|SINE|Alu	24627.0	NM_001081195	238247.0	Mm.241601	NM_001081195	ENSMUSG00000048118	Arid4a	A630009N03|A630067N03Rik|Rbbp1	AT rich interactive domain 4A (RBP1-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-42978583-4	chr5	42978480	42978680	+	954.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-254883.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-61487956-2	chr18	61487856	61488056	+	881.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3349.0	NR_045419	442846.0	Mm.417648	NR_045419		A530050N04Rik	-	RIKEN cDNA A530050N04 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4907289-2	chr16	4907189	4907389	+	879.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357062, intron 1 of 17)	intron (NM_001357062, intron 1 of 17)	21189.0	NM_001357061	17237.0	Mm.291326	NM_029657	ENSMUSG00000022517	Mgrn1	2610042J20Rik|mKIAA0544|md|nc	mahogunin, ring finger 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-102498970-4	chr5	102498875	102499075	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146161, intron 1 of 8)	intron (NM_146161, intron 1 of 8)	17584.0	NM_029270	231532.0	Mm.440191	NM_029270	ENSMUSG00000057315	Arhgap24	0610025G21Rik	Rho GTPase activating protein 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-22747641-2	chr2	22747541	22747741	+	752.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26686.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-57708573-4	chr9	57708480	57708680	+	904.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153799)	promoter-TSS (NM_153799)	11.0	NM_153799	353190.0	Mm.268104	NM_153799	ENSMUSG00000038957	Edc3	AA517853|Lsm16|Yjdc	enhancer of mRNA decapping 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-59419347-4	chr4	59419223	59419423	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163288, intron 3 of 16)	L1MB3|LINE|L1	19310.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	5.32993632138657	4.27708229263206	6.27110314905257	5.26987417662722	5.89347117332346	5.98133912291299	6.25836879133058	6.26950825907509	0.718818331708714	0.0307161925673188	0.241291714375398
Merged-chr10-122054627-4	chr10	122054531	122054731	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7316.0	NM_001081037	117600.0	Mm.288698	NM_001081037	ENSMUSG00000020121	Srgap1	4930572H05Rik|Arhgap13	SLIT-ROBO Rho GTPase activating protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-18197411-4	chr10	18197278	18197478	+	975.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195036, intron 3 of 20)	intron (NM_001195036, intron 3 of 20)	13512.0	NM_001195036	100045792.0	Mm.380617	NM_001195036	ENSMUSG00000071392	Ect2l	C330021H03Rik|Gm10331	epithelial cell transforming sequence 2 oncogene-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-84342579-4	chr17	84342501	84342701	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183021, intron 26 of 37)	LTR40b|LTR|ERVL	123607.0	NM_183021	240174.0	Mm.246767	NM_177826	ENSMUSG00000024251	Thada	6530405K19|A930021O22|AU019899|BC052885|GITA	thyroid adenoma associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19216815-2	chr7	19216715	19216915	+	717.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175668, intron 1 of 1)	intron (NM_175668, intron 1 of 1)	4277.0	NM_175668	319197.0	Mm.135984	NM_175668	ENSMUSG00000044317	Gpr4	-	G protein-coupled receptor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-44149119-3	chr10	44149023	44149223	+	896.0833130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21324.0	NR_001582	70365.0	Mm.87073	NR_001582	ENSMUSG00000091358	Speer5-ps1	1700007C10Rik|SPEER-5|Speer5-ps	spermatogenesis associated glutamate (E)-rich protein 5, pseudogene 1	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-99279157-4	chr5	99279063	99279263	+	687.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26236.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	-0.953721354153451	-1.41025554057125	-1.42001056191158	-1.42802362688808	-1.44024889148474	-1.40814158675276	-1.41780223890411	-1.42658929208844	-2.11310844444413	0.543369238581748	1
Merged-chr6-83518840-1	chr6	83518740	83518940	+	564.0	f1_c57bl6.idr	intron (NM_009610, intron 7 of 8)	ORR1B1|LTR|ERVL-MaLR	-11871.0	NM_001162521	27369.0	Mm.42234	NM_013764	ENSMUSG00000014554	Dguok	dGK|dGK1|dGK2|dGK3	deoxyguanosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30409157-2	chr2	30409057	30409257	+	764.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007760, intron 3 of 13)	intron (NM_007760, intron 3 of 13)	6591.0	NM_007760	12908.0	Mm.20396	NM_007760	ENSMUSG00000026853	Crat	AW107812|CARAT	carnitine acetyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47502901-2	chr17	47502801	47503001	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022015)	promoter-TSS (NM_022015)	-610.0	NM_022015	63856.0	Mm.275901	NM_022015	ENSMUSG00000023980	Taf8	AW260255|Tbn	TATA-box binding protein associated factor 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36570161-4	chr1	36570033	36570233	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001126046, intron 12 of 14)	intron (NM_001126046, intron 12 of 14)	-11752.0	NM_001126047	20353.0	Mm.29558	NM_001126047	ENSMUSG00000026121	Sema4c	AI426163|M-Sema F|Semacl1|Semaf|Semai|sema I	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6237932-2	chr19	6237832	6238032	+	813.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur2|SINE|Alu	-2092.0	NM_198168	225849.0	Mm.118076	NM_198168	ENSMUSG00000024777	Ppp2r5b	B'beta|BC026670	protein phosphatase 2, regulatory subunit B', beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-66872255-2	chr9	66872155	66872355	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	-37549.0	NM_026674	68318.0	Mm.284229	NM_026674	ENSMUSG00000053040	Aph1c	0610008A10Rik|APH-1b|Aph1b	aph1 homolog C, gamma secretase subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-81722010-2	chr12	81721910	81722110	+	581.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001174107, exon 11 of 11)	3' UTR (NM_001174107, exon 11 of 11)	59160.0	NM_177395	338372.0	Mm.35284	NM_177395	ENSMUSG00000042724	Map3k9	E130314H24Rik|Mlk1|Prke1	mitogen-activated protein kinase kinase kinase 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-10304417-2	chr3	10304317	10304517	+	704.6999509999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3234.0	NM_029310	75497.0	Mm.47052	NM_029310	ENSMUSG00000027530	Fabp12	1700008G05Rik	fatty acid binding protein 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46003475-4	chr19	46003385	46003585	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_176785)	promoter-TSS (NM_176785)	7.0	NM_176785	20170.0	Mm.101110	NM_176785	ENSMUSG00000074811	Hps6	5330434M19Rik|BLOC2|ru	HPS6, biogenesis of lysosomal organelles complex 2 subunit 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-69862678-4	chr14	69862585	69862785	+	897.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028560, intron 3 of 6)	L2a|LINE|L2	22278.0	NM_028526	73523.0	Mm.23509	NM_028526	ENSMUSG00000022085	Pebp4	PEBP-4	phosphatidylethanolamine binding protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-89090738-4	chr11	89090698	89090898	+	822.791687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033266, intron 3 of 3)	B2_Mm2|SINE|B2	16957.0	NM_001033266	217071.0	Mm.342127	NM_001033266	ENSMUSG00000072553	Gm525	-	predicted gene 525	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-79036497-4	chr2	79036409	79036609	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	166831.0	NR_151457	22193.0	Mm.1485	NM_009454	ENSMUSG00000027011	Ube2e3	Ubce4|ubcM2	ubiquitin-conjugating enzyme E2E 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127195459-6	chr10	127195396	127195596	+	913.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045715, exon 1 of 4)	non-coding (NR_045715, exon 1 of 4)	213.0	NM_030714	80904.0	Mm.271724	NM_030714	ENSMUSG00000040415	Dtx3	Deltex3|mg310	deltex 3, E3 ubiquitin ligase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36671504-2	chr18	36671404	36671604	+	613.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001357512, exon 12 of 12)	exon (NM_001357512, exon 12 of 12)	-1193.0	NM_025291	24068.0	Mm.29058	NM_025291	ENSMUSG00000006050	Sra1	AA959952|Sra|Srap|Straa1|Strra1	steroid receptor RNA activator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-78821052-4	chr8	78820937	78821137	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001191004, intron 1 of 4)	CpG	115.0	NM_001191004	78651.0	Mm.28694	NM_030145	ENSMUSG00000031683	Lsm6	1500031N17Rik|2410088K19Rik|AI747288	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-31693411-2	chr17	31693315	31693515	+	660.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15484.0	NM_001278570	12954.0	Mm.1228	NM_013501	ENSMUSG00000024041	Cryaa	Acry-1|Crya-1|Crya1|DAcry-1|lop18	crystallin, alpha A	protein-coding	1.74845486098146	1.5440918063646	1.20331923200047	3.04443884411284	2.38465960624354	1.80170210913138	1.93256140112207	3.47022589451301	0.946867324070811	0.347177822691011	0.847437850938575
Merged-chr5-88553341-4	chr5	88553289	88553489	+	998.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1073.0	NM_023054	65961.0	Mm.490364	NM_023054	ENSMUSG00000070697	Utp3	2400011K09Rik|AW557551|C87704|Crl-1|Crl1|Crlz1|Sas10	UTP3 small subunit processome component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-75862287-4	chr15	75862199	75862399	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026960)	promoter-TSS (NM_026960)	-40.0	NM_026960	69146.0	Mm.27385	NM_026960	ENSMUSG00000022575	Gsdmd	1810036L03Rik|AW558049|DF5L|Dfna5l|Gsdmdc1|M2-4	gasdermin D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-31082614-3	chr13	31082512	31082712	+	832.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-108565.0	NM_025588	66482.0	Mm.293510	NM_025588	ENSMUSG00000021357	Exoc2	2410030I24Rik|AI648199|Sec5|Sec5l1	exocyst complex component 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-46924007-2	chr14	46923895	46924095	+	608.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037221, intron 2 of 12)	intron (NM_001037221, intron 2 of 12)	30933.0	NR_105813	102465206.0		NR_105813	ENSMUSG00000099036	Mir378c	Gm27930|mmu-mir-378c	microRNA 378c	ncRNA	0.6611658963753	0.243069913209871	0.23778621808784	0.383664280623417	0.476727158517582	0.424721438766494	0.665708025822357	0.516591639855181	0.901356319136676	0.610160050720786	1
Merged-chr1-125466063-2	chr1	125465963	125466163	+	713.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-30336.0	NM_001205385	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-119792037-4	chr8	119791937	119792137	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13621.0	NM_028883	74347.0	Mm.358759	NM_028883	ENSMUSG00000034105	Tldc1	4632415K11Rik|Kiaa1609	TBC/LysM associated domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-35833475-4	chr12	35833384	35833584	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-92137.0	NM_207531	403205.0	Mm.190508	NM_207531	ENSMUSG00000036231	Agr3	BCMP11|E030025L21Rik|Gm888	anterior gradient 3	protein-coding	4.70750749989719	4.95429540397509	3.35620580918344	3.00407463395303	4.83179815208024	5.13157150188376	3.49564661901819	4.08857001145403	0.351835765246251	0.520151648240693	0.947641799425091
Merged-chr2-25422029-4	chr2	25421903	25422103	+	855.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1239.0	NM_001289453	14347.0	Mm.1203	NM_013524	ENSMUSG00000036587	Fut7	AI853193|FTVII|Fuc-TVII|FucT-VII	fucosyltransferase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-117134755-2	chr4	117134655	117134855	+	937.833374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013807)	promoter-TSS (NM_013807)	-792.0	NM_001313916	12795.0	Mm.259022	NM_013807	ENSMUSG00000028680	Plk3	Cnk|Fnk|PLK-3|PRK	polo like kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-117311172-1	chr3	117311072	117311272	+	564.0	f0_balb.idr	Intergenic	Lx7|LINE|L1	49704.0	NM_177664	229791.0	Mm.140138	NM_177664	ENSMUSG00000044667	Plppr4	A330086D10|D3Bwg0562e|Lppr4|PRG-1|mKIAA0455	phospholipid phosphatase related 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-35632522-2	chr8	35632379	35632579	+	688.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081279, intron 1 of 2)	intron (NM_001081279, intron 1 of 2)	-43459.0	NR_040376	100504714.0	Mm.381744	NR_040376	ENSMUSG00000097357	Gm16793	-	predicted gene, 16793	ncRNA	2.54975117562214	1.87638804532532	2.39458907348381	1.60597796545212	1.69179407460641	2.1759031015333	1.21941640587776	1.91294022803049	-0.985142634333173	0.329874115586878	0.831942889324137
Merged-chr3-67583948-2	chr3	67583848	67584048	+	614.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025813, intron 1 of 15)	intron (NM_025813, intron 1 of 15)	1180.0	NM_025813	66868.0	Mm.491153	NM_025813	ENSMUSG00000027775	Mfsd1	1200003O06Rik	major facilitator superfamily domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34836115-1	chr17	34836015	34836215	+	639.0	f1_balb.idr	promoter-TSS (NM_001163770)	promoter-TSS (NM_001163770)	788.0	NM_019442	54402.0	Mm.440064	NM_019442	ENSMUSG00000061207	Stk19	G11|RP1	serine/threonine kinase 19	protein-coding	-0.0148131258530852	0.00201018558516772	0.453688751875896	-0.00774777225166803	0.716360389481194	0.00325080734087307	-0.00228132079684426	0.425942491783926	1.48376764793102	0.510913242265054	1
Merged-chr11-45944065-2	chr11	45943965	45944165	+	897.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_028185, intron 1 of 3)	intron (NM_028185, intron 1 of 3)	870.0	NM_028185	72290.0	Mm.249827	NM_028185	ENSMUSG00000044847	Lsm11	2210404M20Rik|AV079530	U7 snRNP-specific Sm-like protein LSM11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-21326064-4	chr11	21325970	21326170	+	910.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290634, intron 8 of 9)	Lx8|LINE|L1	18605.0	NR_035454	100316753.0		NR_035454	ENSMUSG00000089555	Mir1933	mir-1933|mmu-mir-1933	microRNA 1933	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-34476219-4	chr6	34476128	34476328	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007563)	promoter-TSS (NM_007563)	-128.0	NM_007563	12183.0	Mm.282863	NM_007563	ENSMUSG00000038871	Bpgm	AI323730|AL022789|C86192	2,3-bisphosphoglycerate mutase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96596946-4	chr3	96596831	96597031	+	940.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024851, intron 1 of 1)	intron (NM_001024851, intron 1 of 1)	295.0	NM_001024851	545554.0	Mm.267664	NM_001024851	ENSMUSG00000049097	Ankrd34a	AW060394|Ankrd34	ankyrin repeat domain 34A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-35319783-4	chr12	35319684	35319884	+	996.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-124887.0	NR_030449	751520.0		NR_030449	ENSMUSG00000076253	Mir680-3	Mirn680-3	microRNA 680-3	ncRNA	3.01471028581795	3.94696099076619	4.38829633313347	3.84780701373072	4.23473398249858	4.04648881791364	3.77256172254071	3.31136261756656	0.0101169778562633	0.984317563199105	0.998431161219273
Merged-chr8-105340032-4	chr8	105339919	105340119	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177699, intron 1 of 21)	intron (NM_177699, intron 1 of 21)	7951.0	NM_177699	234686.0	Mm.87724	NM_177699	ENSMUSG00000014778	Fhod1	BC017144|FHOS|FHOS1	formin homology 2 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-107384394-2	chr11	107384294	107384494	+	625.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 1 of 9)	intron (NR_153311, intron 1 of 9)	86326.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-98417383-4	chr15	98417286	98417486	+	864.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	18941.0	NR_015496	73302.0	Mm.272760	NR_015496	ENSMUSG00000099353	1700031M16Rik	4930413L20Rik	RIKEN cDNA 1700031M16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102733565-4	chr12	102733470	102733670	+	910.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10091.0	NM_001142937	64113.0	Mm.291222	NM_022323	ENSMUSG00000096458	Moap1	AA987038|Map-1|Pnma4	modulator of apoptosis 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-50763161-4	chr10	50763067	50763267	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198007, intron 34 of 41)	intron (NM_198007, intron 34 of 41)	-132484.0	NM_011376	20464.0	Mm.4774	NM_011376	ENSMUSG00000019913	Sim1	bHLHe14|mSIM1	single-minded family bHLH transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-41100532-3	chr8	41100422	41100622	+	758.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005863, intron 1 of 13)	MTC|LTR|ERVL-MaLR	14145.0	NM_001286413	102103.0	Mm.149438	NM_001005863	ENSMUSG00000045636	Mtus1	AI481402|ATBP135|Atip1|B430010I23Rik|B430305I03Rik|C85752|Cctsg1-440|MD44|MTSG1|mKIAA1288	mitochondrial tumor suppressor 1	protein-coding	3.25906770520573	1.72308563308725	3.86109336597103	3.9652213140677	2.8579991683086	3.32962379313593	2.73582592610954	3.93541541303126	-0.220601149335634	0.7551494431139	0.998431161219273
Merged-chr3-104777611-2	chr3	104777527	104777727	+	566.5	f0_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183224)	promoter-TSS (NM_183224)	-80.0	NM_183224	329731.0	Mm.389494	NM_183224	ENSMUSG00000055865	Fam19a3	7530404M11Rik|Sam3|TAFA3|Tafa-3	family with sequence similarity 19, member A3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141176378-4	chr7	141176273	141176473	+	783.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3522.0	NM_001172100	107702.0	Mm.197493	NM_145135	ENSMUSG00000038650	Rnh1	AW546468|C80305|RNH	ribonuclease/angiogenin inhibitor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-108809442-4	chr9	108809340	108809540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030729, intron 1 of 12)	ERVB4_1C-LTR_Mm|LTR|ERVK	1060.0	NM_030729	80987.0	Mm.192416	NM_030729	ENSMUSG00000032598	Nckipsd	AF3P21|DIP1|ORF1|SPIN90|WASLBP|WISH|Wasbp	NCK interacting protein with SH3 domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-65565668-4	chr4	65565568	65565768	+	985.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207109, intron 17 of 22)	intron (NM_207109, intron 17 of 22)	-39318.0	NM_053084	69807.0	Mm.22786	NM_053084	ENSMUSG00000051675	Trim32	1810045E12Rik|3f3|BBS11|Zfp117	tripartite motif-containing 32	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-82073193-4	chr11	82073106	82073306	+	932.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15374.0	NM_011330	20292.0	Mm.4686	NM_011330	ENSMUSG00000020676	Ccl11	Scya11|eotaxin	chemokine (C-C motif) ligand 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81199503-4	chr15	81199340	81199540	+	923.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8587.0	NR_015603	67638.0	Mm.390832	NM_026288	ENSMUSG00000047938	4930483J18Rik	-	RIKEN cDNA 4930483J18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117686240-2	chr11	117686140	117686340	+	781.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198022, intron 1 of 21)	intron (NM_198022, intron 1 of 21)	31951.0	NM_198022	217351.0	Mm.40272	NM_198022	ENSMUSG00000025571	Tnrc6c	9930033H14Rik|mKIAA1582	trinucleotide repeat containing 6C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3352910-2	chr12	3352810	3353010	+	906.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-12222.0	NM_008445	16570.0	Mm.7688	NM_008445	ENSMUSG00000020668	Kif3c	mKIAA4058	kinesin family member 3C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34637591-2	chr17	34637492	34637692	+	956.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7291.0	NM_019873	56299.0	Mm.10025	NM_019873	ENSMUSG00000033739	Fkbpl	DIR1|NG7|Ppiase-X|Wisp39	FK506 binding protein-like	protein-coding	-0.499306241829869	-0.0241361417717043	-0.633107980711827	-0.635711851732366	-0.371725151860001	-0.628962061348232	-0.632362691325267	-0.635257324335517	-1.55018998171751	0.567155943811831	1
Merged-chr8-51619712-2	chr8	51619612	51619812	+	563.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	-736899.0	NR_151738	330767.0	Mm.246790	NR_151738	ENSMUSG00000110013	1190028D05Rik	-	RIKEN cDNA 1190028D05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-58221283-2	chr17	58221183	58221383	+	566.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081653, intron 13 of 23)	Lx7|LINE|L1	451713.0	NM_001081653	620292.0	Mm.391030	NM_001081653	ENSMUSG00000038048	Cntnap5c	Caspr5-3|EG620292|Gm325	contactin associated protein-like 5C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-26883467-2	chr8	26883367	26883567	+	848.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59044.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-60027965-2	chr9	60027865	60028065	+	848.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_172444, intron 2 of 11)	intron (NM_172444, intron 2 of 11)	76671.0	NM_001101600	665389.0	Mm.335214	NM_001101600		Gm7616	EG665389	predicted gene 7616	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85497499-4	chr12	85497405	85497605	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23615.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-97472685-4	chr16	97472588	97472788	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020622, intron 7 of 7)	L1MB7|LINE|L1	-9782.0	NR_003520	17857.0	Mm.33996	NM_010846	ENSMUSG00000000386	Mx1	AI893580|Mx|Mx-1	MX dynamin-like GTPase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152612893-4	chr1	152612802	152613002	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346119, intron 2 of 17)	intron (NM_001346119, intron 2 of 17)	12315.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-6708882-3	chr15	6708786	6708986	+	885.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030168, intron 2 of 37)	CpG-4767	505.0	NM_030168	78757.0	Mm.275811	NM_030168	ENSMUSG00000050310	Rictor	4921505C17Rik|6030405M08Rik|AVO3|AW492497|D530039E11Rik	RPTOR independent companion of MTOR, complex 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-31124232-4	chr6	31124167	31124367	+	948.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110471, intron 3 of 3)	intron (NR_110471, intron 3 of 3)	-61174.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-58913355-2	chr4	58913255	58913455	+	583.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172381)	promoter-TSS (NM_172381)	-606.0	NM_172381	230249.0	Mm.234801	NM_172381	ENSMUSG00000050812	AI314180	AW558785|BB181316|Ecpas|mKIAA0368	expressed sequence AI314180	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-169932030-2	chr2	169931939	169932139	+	672.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31148.0	NR_131974	446211.0	Mm.266854	NR_131974	ENSMUSG00000103935	AY702102	STDP1	cDNA sequence AY702102	ncRNA	1.598507711363	1.62920057866983	0.739263931996727	1.70539938076944	0.708775794936521	0.758544876614823	1.68549072813814	0.729008186284008	-1.50532670670053	0.325367643136786	0.827782420413875
Merged-chr1-183266275-4	chr1	183266162	183266362	+	992.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-30798.0	NM_181732	108909.0	Mm.290502	NM_145626	ENSMUSG00000042901	Aida	2610208M17Rik|BC004835	axin interactor, dorsalization associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-39274428-2	chr4	39274328	39274528	+	681.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A0|LTR|ERVL-MaLR	-175865.0	NM_001081095	75471.0	Mm.23522	NM_001081095	ENSMUSG00000028287	1700009N14Rik	AI429145	RIKEN cDNA 1700009N14 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-6747058-4	chr17	6746978	6747178	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009510, intron 7 of 12)	intron (NM_009510, intron 7 of 12)	35702.0	NM_009510	22350.0	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-91234951-3	chr10	91234842	91235042	+	947.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14323.0	NR_151510	102633753.0	Mm.416936	NR_151510		4930534H03Rik	-	RIKEN cDNA 4930534H03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-86415136-2	chr1	86415036	86415236	+	922.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11193.0	NM_027966	71863.0	Mm.179627	NM_027966	ENSMUSG00000036574	Tex44	1700019O17Rik	testis expressed 44	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-5514898-4	chr5	5514813	5515013	+	942.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022890)	promoter-TSS (NM_022890)	63.0	NM_022890	64945.0	Mm.40132	NM_022890	ENSMUSG00000046798	Cldn12	-	claudin 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-65039467-2	chr12	65039367	65039567	+	783.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177806, intron 1 of 13)	intron (NM_177806, intron 1 of 13)	3133.0	NM_177806	328110.0	Mm.283339	NM_177806	ENSMUSG00000035597	Prpf39	Srcs1	pre-mRNA processing factor 39	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44453742-2	chr9	44453656	44453856	+	898.56665	f1_balb.idr|f1_c57bl6.idr	intron (NM_009476, intron 3 of 4)	intron (NM_009476, intron 3 of 4)	1011.0	NM_009476	22269.0	Mm.4453	NM_009476	ENSMUSG00000041523	Upk2	AW491716|UPII	uroplakin 2	protein-coding	0.506759205011566	0.364968148745421	0.35478381849396	1.42393954657878	0.789980515249311	1.20506057834946	0.357043492541043	0.348215893213198	-0.151120820244197	0.933248559872353	1
Merged-chr8-19713450-2	chr8	19713350	19713550	+	647.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1A|DNA|hAT-Charlie	-16126.0	NM_001270553	100861668.0	Mm.491087	NM_001270553	ENSMUSG00000095294	Gm21119	-	predicted gene, 21119	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-60612353-4	chr13	60612241	60612441	+	931.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	10130.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-84274057-4	chr18	84273973	84274173	+	972.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033341, intron 8 of 8)	intron (NM_001033341, intron 8 of 8)	185915.0	NM_146090	225791.0	Mm.147052	NM_146090	ENSMUSG00000049090	Zadh2	C530046K17Rik|PTGR-3|Pthr3	zinc binding alcohol dehydrogenase, domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64203334-2	chr5	64203234	64203434	+	546.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019636, intron 2 of 19)	intron (NM_019636, intron 2 of 19)	-27023.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-36688969-2	chr3	36688869	36689069	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019510, intron 1 of 11)	intron (NM_019510, intron 1 of 11)	1198.0	NM_019510	22065.0	Mm.74363	NM_019510	ENSMUSG00000027716	Trpc3	Mwk|Trcp3|Trp3|Trrp3	transient receptor potential cation channel, subfamily C, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-117584685-4	chr6	117584612	117584812	+	983.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Rod|LINE|L1	89477.0	NR_152214	100126203.0	Mm.217172	NR_152214		6820426E19Rik	Gm43983	RIKEN cDNA 6820426E19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-50113008-5	chr18	50112897	50113097	+	854.434265	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	-15204.0	NM_008292	15488.0	Mm.277857	NM_008292	ENSMUSG00000024507	Hsd17b4	17-beta-HSD|17[b]-HSD|DBP|MFE-2|MFP2|MPF-2|Mfp-2|perMFE-2	hydroxysteroid (17-beta) dehydrogenase 4	protein-coding	3.6595921623681	2.48794383194038	3.3626693888419	3.62091994069795	3.52909743488972	2.50735019732155	2.59016778444707	3.75495069343015	-0.226037144012026	0.72917559848438	0.998431161219273
Merged-chr12-110855610-2	chr12	110855519	110855719	+	710.5	f0_balb.idr|f1_balb.idr	exon (NM_001199785, exon 2 of 7)	exon (NM_001199785, exon 2 of 7)	5340.0	NM_028365	72805.0	Mm.443524	NM_028365	ENSMUSG00000021271	Zfp839	2810455K09Rik	zinc finger protein 839	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-30611331-2	chr15	30611282	30611482	+	632.625	f0_balb.idr|f0_c57.idr	intron (NM_001355502, intron 3 of 21)	intron (NM_001355502, intron 3 of 21)	-427744.0	NR_045186	73784.0	Mm.66947	NR_045186	ENSMUSG00000115474	4930430F21Rik	-	RIKEN cDNA 4930430F21 gene	ncRNA	2.48804643383719	2.22947758982521	2.69671568613163	2.09644660244583	2.00833414547641	1.42188357832352	2.30505994414587	2.79027888975188	-0.366619592590856	0.682456761331961	0.995882295196263
Merged-chr4-126136956-4	chr4	126136873	126137073	+	934.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028800, intron 8 of 10)	intron (NM_028800, intron 8 of 10)	-11030.0	NM_172145	230752.0	Mm.41569	NM_172145	ENSMUSG00000050212	Eva1b	2610027C15Rik|Fam176b	eva-1 homolog B (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-86154736-4	chr1	86154659	86154859	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310702)	promoter-TSS (NM_001310702)	-21.0	NM_030184	78795.0	Mm.379264	NM_027456	ENSMUSG00000062590	Armc9	3830422A13Rik|4831423D23Rik|4930438O05Rik|5730415N24Rik	armadillo repeat containing 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-164962069-2	chr2	164961969	164962169	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355481, intron 1 of 24)	intron (NM_001355481, intron 1 of 24)	1223.0	NM_001355480	57138.0	Mm.252987	NM_020333	ENSMUSG00000017740	Slc12a5	KCC2|mKIAA1176	solute carrier family 12, member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19665789-1	chr7	19665689	19665889	+	710.0	f0_balb.idr	promoter-TSS (NM_019649)	promoter-TSS (NM_019649)	-759.0	NM_019649	56457.0	Mm.290960	NM_019649	ENSMUSG00000002981	Clptm1	HS9|N14	cleft lip and palate associated transmembrane protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141628964-2	chr7	141628864	141629064	+	949.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357068, intron 17 of 21)	intron (NM_001357068, intron 17 of 21)	8263.0	NR_106030	102466798.0		NR_106030	ENSMUSG00000098759	Mir7063	Gm27654|mmu-mir-7063	microRNA 7063	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-60733454-2	chr10	60733354	60733554	+	716.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023596, intron 2 of 5)	intron (NM_023596, intron 2 of 5)	19328.0	NM_023596	71279.0	Mm.284462	NM_023596	ENSMUSG00000020100	Slc29a3	4933435C21Rik|AW987637|Ent3	solute carrier family 29 (nucleoside transporters), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126749605-2	chr7	126749505	126749705	+	894.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10021.0	NM_011952	26417.0	Mm.8385	NM_011952	ENSMUSG00000063065	Mapk3	Erk-1|Erk1|Ert2|Esrk1|Mnk1|Mtap2k|Prkm3|p44|p44erk1|p44mapk	mitogen-activated protein kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-107469835-4	chr11	107469734	107469934	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 1 of 9)	CpG	886.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-99485762-3	chr10	99485676	99485876	+	759.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-123395.0	NR_038019	100504202.0	Mm.403801	NR_038019	ENSMUSG00000111962	Gm20110	-	predicted gene, 20110	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-45239932-3	chr2	45239815	45240015	+	889.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-122473.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-170998887-2	chr1	170998787	170998987	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	-20039.0	NM_144559	246256.0	Mm.251254	NM_144559	ENSMUSG00000059089	Fcgr4	4833442P21Rik|CD16-2|FcgRIV|FcgammaRIV|Fcgr3a|Fcrl3	Fc receptor, IgG, low affinity IV	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120488843-3	chr8	120488726	120488926	+	977.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198671)	promoter-TSS (NM_198671)	-40.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-26978708-4	chr8	26978621	26978821	+	994.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001101502, exon 2 of 2)	exon (NM_001101502, exon 2 of 2)	1385.0	NM_001110508	353310.0	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-52048325-3	chr3	52048239	52048439	+	846.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	56667.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-135444851-2	chr6	135444743	135444943	+	624.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	77350.0	NM_001288627	13730.0	Mm.182785	NM_010128	ENSMUSG00000030208	Emp1	I-8-09|TMP	epithelial membrane protein 1	protein-coding	0.62414988953932	0.198740277816048	1.41146090634479	0.815304202736763	0.171240721597619	0.200852194978625	0.19137937540817	0.183174673779977	-4.48852572522569	0.0203719772687829	1
Merged-chr17-5631133-2	chr17	5631033	5631233	+	719.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	138533.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-32178020-2	chr16	32177920	32178120	+	663.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1780.0	NM_001033539	328660.0	Mm.441006	NM_001033539	ENSMUSG00000075269	Bex6	B020003O03Rik	brain expressed family member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-153922611-1	chr4	153922511	153922711	+	752.666687	f0_balb.idr	Intergenic	Intergenic	27865.0	NR_040670	407793.0	Mm.260950	NR_040670		BC039966	-	cDNA sequence BC039966	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-139402946-4	chr7	139402848	139403048	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355162, intron 1 of 15)	L1MB5|LINE|L1	2454.0	NM_001355162	212111.0	Mm.28308	NM_183144	ENSMUSG00000025477	Inpp5a	-	inositol polyphosphate-5-phosphatase A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-142890609-4	chr3	142890497	142890697	+	824.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152127, intron 1 of 1)	MTC|LTR|ERVL-MaLR	8102.0	NR_152127	320229.0	Mm.187582	NR_152127		9530052C20Rik	-	RIKEN cDNA 9530052C20 gene	ncRNA	-0.219020869227416	-0.200679660066107	0.52688379175807	-0.211271866481916	-0.217863126672337	-0.199341883462125	0.639399174187781	-0.210460944577191	0.305848368790414	0.902083538611979	1
Merged-chr6-121251405-4	chr6	121251309	121251509	+	900.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011909, intron 1 of 10)	intron (NM_011909, intron 1 of 10)	5503.0	NM_011909	24110.0	Mm.326911	NM_011909	ENSMUSG00000030107	Usp18	1110058H21Rik|AW047653|UBP43|Ubp15	ubiquitin specific peptidase 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-43058816-4	chr17	43058702	43058902	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178589, intron 3 of 5)	MTD|LTR|ERVL-MaLR	42247.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	1.86621651104173	3.09176283402088	1.5280060352587	2.90200434508867	3.013422930728	3.20746632881142	3.10124269765715	3.23695413378315	1.14982231410901	0.135009212935709	0.573799326075797
Merged-chr11-23217627-4	chr11	23217524	23217724	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38417.0	NM_001035226	103573.0	Mm.217547	NM_134014	ENSMUSG00000020290	Xpo1	AA420417|Crm1|Exp1	exportin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-9570161-3	chr12	9570126	9570326	+	606.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045488, exon 2 of 4)	non-coding (NR_045488, exon 2 of 4)	359.0	NR_045488	69420.0	Mm.396193	NR_045488	ENSMUSG00000099360	1700022H16Rik	-	RIKEN cDNA 1700022H16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-21448183-3	chr11	21448076	21448276	+	816.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	63004.0	NR_028259	237694.0	Mm.72926	NM_172792	ENSMUSG00000078962	4932414J04Rik	-	RIKEN cDNA 4932414J04 gene	ncRNA	-0.662826441749988	-1.00555184936033	-1.01675512286785	-1.01992432642343	-0.654846858003193	-1.00312405325568	-1.01421894731451	-1.01959449741028	0.0418081237259606	0.989738874530268	1
Merged-chr19-29470144-4	chr19	29470029	29470229	+	893.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021396, intron 5 of 5)	intron (NM_021396, intron 5 of 5)	51858.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-120155036-4	chr6	120154946	120155146	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016718, intron 1 of 3)	intron (NM_016718, intron 1 of 3)	-38777.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84197706-4	chr8	84197584	84197784	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-10834.0	NR_029740	387216.0		NR_029740	ENSMUSG00000065611	Mir23a	Mirn23a|mir-23a|mmu-mir-23a	microRNA 23a	ncRNA	5.69522600394337	4.6647328428037	4.66963812653538	4.80947499883598	5.76607613265456	4.75202063273575	5.29232370481319	4.66132427882627	0.182268375542012	0.630420758942732	0.981462672084773
Merged-chr4-130919425-4	chr4	130919313	130919513	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010686, intron 1 of 7)	intron (NM_010686, intron 1 of 7)	6079.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-124442452-2	chr9	124442352	124442552	+	913.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18665.0	NR_015516	75135.0	Mm.476814	NR_015516		4930526I15Rik	1600027J15Rik	RIKEN cDNA 4930526I15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-154933630-3	chr4	154933550	154933750	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5573.0	NM_178931	230979.0	Mm.215147	NM_178931	ENSMUSG00000042333	Tnfrsf14	Atar|HveA|Hvem|Tnfrs14	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	protein-coding	1.89188069769489	1.21329300913523	1.92837464469103	2.37657896391538	2.47766631968347	1.21885025839068	1.94364081820084	2.0058288000029	0.190846068279785	0.860043971771615	0.998431161219273
Merged-chr17-63909539-2	chr17	63909439	63909639	+	672.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037997, intron 3 of 18)	B3|SINE|B2	-28433.0	NM_008000	14158.0	Mm.23039	NM_008000	ENSMUSG00000000127	Fer	AV082135|C330004K01Rik|Fert|Fert2	fer (fms/fps related) protein kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-114440062-4	chr8	114439945	114440145	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019573, intron 1 of 8)	CpG	393.0	NM_019573	80707.0	Mm.440420	NM_019573	ENSMUSG00000004637	Wwox	5330426P09Rik|9030416C10Rik|WOX1	WW domain-containing oxidoreductase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-113398357-4	chr2	113398255	113398455	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285458, intron 2 of 16)	intron (NM_001285458, intron 2 of 16)	-42709.0	NM_001285459	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	3.81718163918437	3.58204766931273	2.01657391636493	4.43195874807741	3.50645433280799	3.51655013435336	2.81425478221095	3.86778782071656	-0.352011891382205	0.583747328254656	0.966605096441162
Merged-chr14-13354299-3	chr14	13354200	13354400	+	829.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028052, intron 2 of 5)	intron (NM_028052, intron 2 of 5)	69520.0	NM_028052	72003.0	Mm.317515	NM_028052	ENSMUSG00000056296	Synpr	1500003F20Rik|SPO	synaptoporin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-35461494-6	chr2	35461419	35461619	+	773.950012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145821)	promoter-TSS (NM_001145821)	-70.0	NM_001145821	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-48916042-3	chr2	48915948	48916148	+	651.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149356, intron 9 of 13)	ORR1C2|LTR|ERVL-MaLR	33219.0	NM_001177313	26428.0	Mm.291059	NM_011958	ENSMUSG00000026761	Orc4	Orc4P|Orc4l|mMmORC4	origin recognition complex, subunit 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-116664255-4	chr6	116664157	116664357	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178045, intron 1 of 10)	intron (NM_178045, intron 1 of 10)	9579.0	NM_178045	213391.0	Mm.257931	NM_178045	ENSMUSG00000042129	Rassf4	3830411C14Rik|AD037|AI586137	Ras association (RalGDS/AF-6) domain family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-35019352-2	chr18	35019252	35019452	+	815.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65001.0	NM_010481	15526.0	Mm.209419	NM_010481	ENSMUSG00000024359	Hspa9	74kDa|Csa|Grp75|Hsc74|Hsp74|Hsp74a|Hspa9a|Mortalin|Mot-2|Mot2|Mthsp70|Pbp74	heat shock protein 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-84778202-4	chr10	84778136	84778336	+	946.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024918, intron 1 of 17)	intron (NM_001024918, intron 1 of 17)	22188.0	NM_001024918	71137.0	Mm.79070	NM_027689	ENSMUSG00000020037	Rfx4	4933412G19Rik|NYD-sp10	regulatory factor X, 4 (influences HLA class II expression)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107543071-2	chr9	107542971	107543171	+	697.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357289)	promoter-TSS (NM_001357289)	862.0	NM_018879	56032.0	Mm.11337	NM_018879	ENSMUSG00000010057	Nprl2	2810446G01Rik|G21|NPR2L|Tusc4	nitrogen permease regulator-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-117503032-2	chr5	117502932	117503132	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001312914, intron 2 of 19)	ID4|SINE|ID	89030.0	NM_001312914	333050.0	Mm.437947	NM_001034873	ENSMUSG00000061578	Ksr2	-	kinase suppressor of ras 2	protein-coding	-2.18243820993087	-2.15538464093652	-2.16356586349869	-2.17028616330028	-2.18053909940952	-2.15361173587851	-2.16171381403791	-2.0403552525549	0.759018020146679	0.829933115115583	1
Merged-chr5-75043306-2	chr5	75043206	75043406	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028850, intron 1 of 5)	intron (NM_028850, intron 1 of 5)	1335.0	NM_028850	74277.0	Mm.239814	NM_028850	ENSMUSG00000029229	Chic2	1700081B18Rik|4930502K01Rik|BTL	cysteine-rich hydrophobic domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133056169-4	chr4	133056002	133056202	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146155, intron 3 of 6)	intron (NM_146155, intron 3 of 6)	44596.0	NM_146155	230793.0	Mm.31816	NM_146155	ENSMUSG00000037692	Ahdc1	D030015G18Rik	AT hook, DNA binding motif, containing 1	protein-coding	3.69276633388937	4.66158681528867	4.73541873229133	4.3058789008534	4.31487631479088	4.48621559675643	4.23170192540111	3.68653944971692	-0.249804640065427	0.564432236341667	0.960753698599198
Merged-chr13-81793982-4	chr13	81793872	81794072	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007684, intron 4 of 4)	intron (NM_007684, intron 4 of 4)	10725.0	NM_007684	12626.0	Mm.12481	NM_007684	ENSMUSG00000021537	Cetn3	MmCEN3	centrin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59721208-4	chr15	59721116	59721316	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	72562.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35436828-2	chr17	35436728	35436928	+	628.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-2327.0	NM_010394	15018.0	Mm.431282	NM_010394	ENSMUSG00000060550	H2-Q7	H-2Q7|Ped|Q9|Qa-2|Qa-7|Qa7	histocompatibility 2, Q region locus 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100321895-6	chr11	100321793	100321993	+	877.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011508, exon 4 of 4)	3' UTR (NM_011508, exon 4 of 4)	1944.0	NM_011508	20918.0	Mm.13886	NM_011508	ENSMUSG00000035530	Eif1	Sui1-rs1	eukaryotic translation initiation factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107288922-4	chr9	107288818	107289018	+	925.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316691, intron 1 of 7)	intron (NM_001316691, intron 1 of 7)	478.0	NM_001316691	102626.0	Mm.222612	NM_178907	ENSMUSG00000032577	Mapkapk3	3PK|AI874665|MAPKAP-K3|MAPKAP3|MK-3|MK3|MapkKapk3	mitogen-activated protein kinase-activated protein kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-105494086-3	chr9	105493979	105494179	+	895.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359822, intron 2 of 28)	intron (NM_001359822, intron 2 of 28)	1054.0	NM_175025	235574.0	Mm.326247	NM_175025	ENSMUSG00000032570	Atp2c1	1700121J11Rik|ATP2C1A|AW061228|BCPM|D930003G21Rik|HHD|SPCA|pmr1	ATPase, Ca++-sequestering	protein-coding	-0.802593673557486	-0.793094718163527	-0.341243695287107	-0.798614554876962	-0.802002397560642	-0.791090896558683	-0.332078011335404	-0.79819523297655	0.040958530317021	0.989184000390448	1
Merged-chr3-121841045-4	chr3	121840912	121841112	+	938.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-25710.0	NM_008991	19299.0	Mm.399042	NM_008991	ENSMUSG00000028127	Abcd3	AI313901|AU018866|AW146054|PMP68|PMP70|Pxmp1	ATP-binding cassette, sub-family D (ALD), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-65763573-4	chr5	65763471	65763671	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024917)	promoter-TSS (NM_001024917)	50.0	NM_001024917	333789.0	Mm.332398	NM_001024917	ENSMUSG00000037795	N4bp2	B3bp|E430014I16|Gm1791|Gm868	NEDD4 binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71191259-2	chr17	71191159	71191359	+	725.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_022882, intron 1 of 19)	MTE2a|LTR|ERVL-MaLR	7281.0	NM_022882	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-91631569-3	chr13	91631423	91631623	+	944.099976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360776, intron 4 of 15)	intron (NM_001360776, intron 4 of 15)	-109998.0	NM_028790	74156.0	Mm.275963	NM_028790	ENSMUSG00000021620	Acot12	1300004O04Rik|4930449F15Rik|AV027244|Cach|mCACH-1	acyl-CoA thioesterase 12	protein-coding	2.02171573921273	2.74416570645028	1.78200453317316	3.27325293790768	2.75759927530603	3.69426445884178	2.39064871459354	2.98976252451624	0.813581236034042	0.297924647252838	0.800257675359925
Merged-chr6-15790284-3	chr6	15790160	15790360	+	894.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175088, intron 4 of 4)	intron (NM_175088, intron 4 of 4)	69599.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-99828699-4	chr5	99828582	99828782	+	788.729126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-74709.0	NR_131054	330133.0	Mm.447264	NR_131054	ENSMUSG00000105218	Gm38413	A830083F22|Gm43248	predicted gene, 38413	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-88840923-2	chr6	88840823	88841023	+	840.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_155424, intron 1 of 11)	intron (NR_155424, intron 1 of 11)	1012.0	NM_001362152	80283.0	Mm.166858	NM_030251	ENSMUSG00000030083	Abtb1	AI847549|BC003234|BPOZ|EF1ABP	ankyrin repeat and BTB (POZ) domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-63198882-4	chr17	63198761	63198961	+	872.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015794, intron 7 of 8)	intron (NM_015794, intron 7 of 8)	114112.0	NR_130176	414079.0	Mm.444282	NR_130176	ENSMUSG00000090565	4930405O22Rik	-	RIKEN cDNA 4930405O22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-8645465-4	chr13	8645388	8645588	+	954.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110345, intron 3 of 10)	intron (NR_110345, intron 3 of 10)	225556.0	NM_001039389	207615.0	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6307754-2	chr19	6307654	6307854	+	629.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033342, intron 1 of 36)	intron (NM_001033342, intron 1 of 36)	1297.0	NM_001033342	240505.0	Mm.329622	NM_001033342	ENSMUSG00000024769	Cdc42bpg	BC046418|MRCKgamma	CDC42 binding protein kinase gamma (DMPK-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91271880-2	chr2	91271765	91271965	+	548.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023854, intron 10 of 15)	ID_B1|SINE|B4	6750.0	NM_023854	77038.0	Mm.43636	NM_023854	ENSMUSG00000027255	Arfgap2	2310032E02Rik|Zfp289	ADP-ribosylation factor GTPase activating protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-4994394-4	chr17	4994291	4994491	+	991.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001085355)	promoter-TSS (NM_001085355)	-683.0	NM_001085355	239985.0	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118700880-2	chr9	118700824	118701024	+	831.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 15 of 27)	intron (NM_133721, intron 15 of 27)	-10768.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	1.2163042194322	1.38331143544248	0.784418158881246	1.80280874660095	0.755842810670318	1.39500876151	0.787725503923246	1.72955281435026	-0.38509839742739	0.788917311942976	0.998431161219273
Merged-chr18-36749256-4	chr18	36749156	36749356	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011879, exon 7 of 20)	exon (NM_011879, exon 7 of 20)	4600.0	NM_011879	24010.0	Mm.30234	NM_011879	ENSMUSG00000024474	Ik	MuRED	IK cytokine	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-39609927-2	chr15	39609827	39610027	+	551.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_053271, intron 21 of 26)	intron (NM_053271, intron 21 of 26)	-49584.0	NM_001256384	116838.0	Mm.309296	NM_053271	ENSMUSG00000037386	Rims2	2810036I15Rik|AW048769|RIM2|Rab3ip2|Rim2(+40A)|Rim2(+44A)|Rim2(+4A)|Serg2|Syt3-rs|mKIAA0751	regulating synaptic membrane exocytosis 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-105865231-3	chr3	105865150	105865350	+	725.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER58A|DNA|hAT-Charlie	-5608.0	NM_027025	69296.0	Mm.235024	NM_027025	ENSMUSG00000000562	Tmigd3	1700001d09rik|4930578J19Rik|Tg(H2-K-CALR*)del52Shmd	transmembrane and immunoglobulin domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-172499834-4	chr1	172499732	172499932	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178598)	promoter-TSS (NM_178598)	-414.0	NM_178598	21346.0	Mm.271711	NM_178598	ENSMUSG00000026547	Tagln2	2700094C18Rik|SM22beta|Sm22B|Sm22a	transgelin 2	protein-coding	4.49885748267448	3.73878162562772	4.33310877685408	4.51232663706132	4.33151941224567	3.3023163191901	5.14184148008435	4.84552228305819	0.330503200041911	0.473337277128727	0.926125823511231
Merged-chr2-137080676-3	chr2	137080578	137080778	+	684.5888669999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_013822)	TTS (NM_013822)	35842.0	NM_013822	16449.0	Mm.22398	NM_013822	ENSMUSG00000027276	Jag1	ABE2|Gsfabe2|Htu|Ozz|Ser-1	jagged 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-25314164-3	chr5	25314080	25314280	+	799.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081383, exon 36 of 59)	exon (NM_001081383, exon 36 of 59)	67807.0	NM_001359890	231050.0	Mm.246718	NM_144908	ENSMUSG00000038072	Galnt11	A430075I06Rik|AI648252|E430002F06Rik	polypeptide N-acetylgalactosaminyltransferase 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-7598346-3	chr10	7598254	7598454	+	824.027771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172784, intron 2 of 6)	L3b|LINE|CR1	8554.0	NM_001359743	237253.0	Mm.206759	NM_172784	ENSMUSG00000019796	Lrp11	1700034J19Rik|6330533B21|9830160H19Rik	low density lipoprotein receptor-related protein 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71476425-2	chr17	71476325	71476525	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1082.0	NM_028887	74355.0	Mm.194450	NM_028887	ENSMUSG00000024054	Smchd1	4931400A14Rik|AW554188|MommeD1|mKIAA0650	SMC hinge domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-5860674-4	chr3	5860582	5860782	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	-284434.0	NM_008994	19302.0	Mm.132336	NM_008994	ENSMUSG00000040374	Pex2	D3Ertd138e|PAF-1|PMP35|Pxmp3	peroxisomal biogenesis factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-64081459-3	chr1	64081351	64081551	+	837.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033563, intron 1 of 3)	intron (NM_033563, intron 1 of 3)	-38950.0	NR_105864	102466760.0		NR_105864	ENSMUSG00000098487	Mir6899	Gm27384|mmu-mir-6899	microRNA 6899	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-20332132-1	chr11	20332032	20332232	+	689.5	f0_balb.idr	exon (NM_018861, exon 1 of 8)	exon (NM_018861, exon 1 of 8)	581.0	NM_018861	55963.0	Mm.6379	NM_018861	ENSMUSG00000020142	Slc1a4	ASCT-1|ASCT1|AW045657|SATT	solute carrier family 1 (glutamate/neutral amino acid transporter), member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-56821298-3	chr18	56821192	56821392	+	593.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177115, intron 1 of 4)	intron (NM_177115, intron 1 of 4)	104256.0	NM_177115	320253.0	Mm.312623	NM_177115	ENSMUSG00000032656	March3	6330411I15Rik|A530081L18Rik|AI843639|MARCH-III	membrane-associated ring finger (C3HC4) 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80806067-3	chr10	80805973	80806173	+	908.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007445, exon 2 of 5)	exon (NM_007445, exon 2 of 5)	825.0	NM_007445	11705.0	Mm.376094	NM_007445	ENSMUSG00000035262	Amh	MIS	anti-Mullerian hormone	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-128733996-3	chr5	128733918	128734118	+	885.022217	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2228.0	NM_021311	57749.0	Mm.272720	NM_021311	ENSMUSG00000029423	Piwil1	MIWI	piwi-like RNA-mediated gene silencing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99044581-3	chr7	99044484	99044684	+	739.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 6 of 14)	intron (NM_178635, intron 6 of 14)	96560.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	1.88906081250373	2.24625910381484	2.27006863816884	2.37831669783179	1.12583453787951	1.46776775800765	1.42634627340061	2.21513881693904	-1.56716524116992	0.134973665021855	0.573799326075797
Merged-chr11-109418108-1	chr11	109418008	109418208	+	620.0	f1_balb.idr	Intergenic	Intergenic	-7838.0	NM_025275	13929.0	Mm.211850	NM_025275	ENSMUSG00000020610	Amz2	AA408420|ESTM12|X83328	archaelysin family metallopeptidase 2	protein-coding	0.725271249796253	0.970123144900613	0.593068590725242	1.24205911639431	0.57591034848381	0.978372566052242	1.19605014273421	1.03685719887219	0.277385437763566	0.85576058995259	1
Merged-chr9-63678311-3	chr9	63678208	63678408	+	956.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016769, intron 1 of 8)	intron (NM_016769, intron 1 of 8)	75662.0	NR_151671	66939.0	Mm.34338	NM_025857	ENSMUSG00000037257	Aagab	2310007F21Rik|p34	alpha- and gamma-adaptin binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-68194632-4	chr18	68194535	68194735	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172631, intron 3 of 5)	intron (NM_172631, intron 3 of 5)	-33311.0	NM_001357444	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-11460984-3	chr16	11460894	11461094	+	998.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028964, intron 13 of 20)	intron (NM_028964, intron 13 of 20)	55346.0	NM_001290148	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-34080592-1	chr19	34080492	34080692	+	675.5	f0_balb.idr	intron (NM_027340, intron 7 of 9)	intron (NM_027340, intron 7 of 9)	13234.0	NM_027340	70166.0	Mm.75602	NM_027340	ENSMUSG00000024770	Lipn	2210418G03Rik|Lipl4	lipase, family member N	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-11717954-3	chr18	11717845	11718045	+	895.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081223, intron 8 of 18)	L2|LINE|L2	60596.0	NM_001081223	225182.0	Mm.154275	NM_175458	ENSMUSG00000041238	Rbbp8	9930104E21Rik|CtIP|RBBP-8|RIM|SAE2	retinoblastoma binding protein 8, endonuclease	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120632122-2	chr11	120632022	120632222	+	934.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_010756, intron 1 of 2)	intron (NM_010756, intron 1 of 2)	1425.0	NM_010756	17134.0	Mm.268010	NM_010756	ENSMUSG00000051510	Mafg	AA545192|C630022N07Rik	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein G (avian)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-33433190-2	chr12	33433090	33433290	+	581.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172253, intron 1 of 3)	intron (NM_172253, intron 1 of 3)	3566.0	NM_172253	28071.0	Mm.196472	NM_172253	ENSMUSG00000020561	Twistnb	2410173G11|2810024J17Rik|D16Wsu83e	twist basic helix-loop-helix transcription factor 1 neighbor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-189659400-2	chr1	189659300	189659500	+	590.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081363, exon 12 of 18)	exon (NM_001081363, exon 12 of 18)	28686.0	NM_001081363	108000.0	Mm.129746	NM_001081363	ENSMUSG00000026605	Cenpf	6530404A22Rik|AI325968|CENF|Lek1|PRO1779|mitosin	centromere protein F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-52674921-4	chr5	52674812	52675012	+	948.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-5211.0	NM_172490	211006.0	Mm.244719	NM_172490	ENSMUSG00000029173	Sepsecs	AA986712|D5Ertd135e|SLA|SecS	Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-72654814-4	chr10	72654728	72654928	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001293684)	promoter-TSS (NM_001293684)	-18.0	NM_025635	52696.0	Mm.62876	NM_025635	ENSMUSG00000019923	Zwint	2010007E07Rik|2600001N01Rik|D10Ertd749e|Zwint-1	ZW10 interactor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53076426-3	chr4	53076410	53076610	+	814.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 20 of 49)	MTD|LTR|ERVL-MaLR	64630.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-63653513-3	chr18	63653406	63653606	+	856.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38853.0	NM_016792	53382.0	Mm.19169	NM_016792	ENSMUSG00000024583	Txnl1	32kDa|TRP32|Txnl	thioredoxin-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-88277634-4	chr1	88277528	88277728	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198652)	promoter-TSS (NM_198652)	-49.0	NM_198652	381280.0	Mm.384762	NM_198652	ENSMUSG00000044783	Hjurp	6430706D22Rik|A730008H23Rik|C330011F01Rik|Gm975|Mfleg1	Holliday junction recognition protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123827751-3	chr5	123827652	123827852	+	973.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37764.0	NM_030701	80885.0	Mm.440567	NM_030701	ENSMUSG00000045502	Hcar2	Gpr109a|Gpr109b|HM74|Niacr1|PUMA-G|Pumag|mHM74b	hydroxycarboxylic acid receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-38944277-2	chr18	38944177	38944377	+	554.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033789, intron 4 of 4)	intron (NM_001033789, intron 4 of 4)	-25578.0	NM_010197	14164.0	Mm.241282	NM_010197	ENSMUSG00000036585	Fgf1	Dffrx|Fam|Fgf-1|Fgfa	fibroblast growth factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-113739130-4	chr9	113739014	113739214	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2359.0	NM_001286599	76499.0	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	3.17820931483437	4.72850173855444	3.6642417288641	4.55313887624681	4.00312696069804	3.9948135139611	4.57332260898334	4.61428675709635	0.212284512251221	0.659465928003888	0.989483215875849
Merged-chr5-124534808-2	chr5	124534708	124534908	+	990.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	-3417.0	NM_021430	75695.0	Mm.41180	NM_021430	ENSMUSG00000029392	Rilpl1	2900002H16Rik|6330559I19Rik|GOSPEL	Rab interacting lysosomal protein-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-70148195-1	chr12	70148095	70148295	+	564.0	f0_balb.idr	Intergenic	Intergenic	-5976.0	NM_001195033	100504285.0	Mm.291105	NM_001195033	ENSMUSG00000090121	Abhd12b	Gm804	abhydrolase domain containing 12B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-31882476-4	chr5	31882376	31882576	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144541, intron 6 of 11)	intron (NM_144541, intron 6 of 11)	184426.0	NM_144541	107976.0	Mm.482126	NM_144541	ENSMUSG00000052139	Babam2	6030405P19Rik|AI429776|B830038C02Rik|Bre	BRISC and BRCA1 A complex member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-102692056-2	chr13	102691956	102692156	+	866.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1491.0	NM_001360519	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-121829650-4	chr8	121829567	121829767	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145605)	promoter-TSS (NM_145605)	-98.0	NM_145605	234825.0	Mm.209329	NM_145605	ENSMUSG00000040263	Klhdc4	AA408426|AV352552|BC012312|G430025P05Rik	kelch domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-147012867-4	chr2	147012752	147012952	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011917)	promoter-TSS (NM_011917)	-147.0	NM_001356403	24128.0	Mm.3065	NM_011917	ENSMUSG00000027433	Xrn2	-	5'-3' exoribonuclease 2	protein-coding	6.56811211946166	5.9695774814974	6.19897876244866	5.92777447429564	6.61793486377705	6.14426114839288	6.60202421586365	5.51001070758524	0.101185500431413	0.706210972427943	0.998431161219273
Merged-chr7-122305625-4	chr7	122305512	122305712	+	982.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316672, intron 2 of 16)	intron (NM_001316672, intron 2 of 16)	16487.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-18892941-3	chr2	18892832	18893032	+	842.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008845, intron 3 of 9)	intron (NM_008845, intron 3 of 9)	-91114.0	NR_131254	66774.0	Mm.87075	NR_131254	ENSMUSG00000097638	Carlr	4933439G12Rik|Carl	cardiac and apoptosis-related long non-coding RNA	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-47470702-2	chr19	47470602	47470802	+	601.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6291.0	NM_008018	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-80081384-3	chr15	80081297	80081497	+	827.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013762, intron 3 of 9)	intron (NM_013762, intron 3 of 9)	1509.0	NR_028281	100302600.0		NR_028281		Snord43	MBII-47	small nucleolar RNA, C/D box 43	snoRNA	1.13748047340777	0.860418898735198	1.62144548327379	1.03141923345292	1.49341410778347	1.28205509909502	1.92036462936291	1.03571968731289	1.04710192802077	0.412158557323731	0.894659309956271
Merged-chr13-12765118-2	chr13	12765018	12765218	+	560.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34940.0	NM_011954	26421.0	Mm.457984	NM_011954		Prl2c4	MRP-3|Mrpplf3|PLF-3|mrp/plf3	prolactin family 2, subfamily c, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-45240817-1	chr3	45240717	45240917	+	739.0	f0_balb.idr	Intergenic	Intergenic	137443.0	NR_045172	72511.0	Mm.140700	NR_045172	ENSMUSG00000097040	2610316D01Rik	-	RIKEN cDNA 2610316D01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-64396508-1	chr11	64396408	64396608	+	627.0	f1_c57bl6.idr	Intergenic	Intergenic	-38824.0	NM_178870	15478.0	Mm.340214	NM_178870	ENSMUSG00000047759	Hs3st3a1	3Ost3a|Hs3st3a	heparan sulfate (glucosamine) 3-O-sulfotransferase 3A1	protein-coding	0.45820347703249	-0.134188853516187	0.169423870115572	-0.141856645090289	-0.00928757366985591	-0.133209218997641	0.176443469999768	-0.1412751851344	-1.21587981117928	0.586857880009436	1
Merged-chr7-16115699-1	chr7	16115599	16115799	+	1000.0	f1_balb.idr	intron (NM_025898, intron 10 of 10)	intron (NM_025898, intron 10 of 10)	-4177.0	NM_133727	70394.0	Mm.41101	NM_133727	ENSMUSG00000006021	Kptn	2310042D10Rik|2E4|C030013F01Rik	kaptin	protein-coding	0.0918566406210702	-0.536357525615851	-0.540104506528266	-0.542992569598472	-0.547069500413438	-0.535512336885873	-0.0750219938591566	-0.542488212068729	-0.584117139001354	0.836044599204599	1
Merged-chr19-42784898-2	chr19	42784798	42784998	+	638.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4920.0	NM_019424	192236.0	Mm.218381	NM_019424	ENSMUSG00000025188	Hps1	6030422N11Rik|BB405864|Gm21361|Hps|ep	HPS1, biogenesis of lysosomal organelles complex 3 subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-61324759-1	chr12	61324659	61324859	+	673.0	f1_c57bl6.idr	Intergenic	Intergenic	197061.0	NR_045049	100504101.0	Mm.235026	NR_045049	ENSMUSG00000113429	Gm20063	-	predicted gene, 20063	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-115823980-4	chr6	115823883	115824083	+	885.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110506, intron 1 of 8)	intron (NM_001110506, intron 1 of 8)	14429.0	NM_001110506	212516.0	Mm.333333	NM_198603	ENSMUSG00000030321	Efcab12	BB124106	EF-hand calcium binding domain 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-154374220-4	chr2	154374120	154374320	+	916.1375119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1501.0	NM_025876	66971.0	Mm.289427	NM_025876	ENSMUSG00000027487	Cdk5rap1	2310066P17Rik	CDK5 regulatory subunit associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27683043-2	chr2	27682943	27683143	+	628.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011305, intron 1 of 9)	intron (NM_011305, intron 1 of 9)	5842.0	NM_011305	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84912192-2	chr8	84912092	84912292	+	851.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_010062)	TTS (NM_010062)	-1143.0	NR_103491	100503676.0	Mm.437155	NR_103491	ENSMUSG00000003812	Gm38426	-	predicted gene, 38426	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-97712843-4	chr10	97712759	97712959	+	847.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033537, intron 4 of 4)	intron (NR_033537, intron 4 of 4)	-1913.0	NR_130993	78127.0	Mm.376175	NR_130992	ENSMUSG00000112497	4930525C09Rik	-	RIKEN cDNA 4930525C09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-65538586-3	chr3	65538487	65538687	+	941.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178892, intron 2 of 5)	intron (NM_178892, intron 2 of 5)	-9173.0	NR_027955	71004.0	Mm.475465	NM_001033527	ENSMUSG00000074580	4931440P22Rik	-	RIKEN cDNA 4931440P22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-108531370-3	chr6	108531253	108531453	+	859.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 60 of 61)	intron (NM_010585, intron 60 of 61)	41610.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-58035860-3	chr2	58035781	58035981	+	699.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172855, intron 9 of 9)	intron (NM_172855, intron 9 of 9)	16871.0	NM_029972	77767.0	Mm.91712	NM_029972	ENSMUSG00000026830	Ermn	A330104H05Rik|AI854460|ermin|mKIAA1189	ermin, ERM-like protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-25517308-3	chr14	25517182	25517382	+	590.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 2 of 23)	intron (NM_183208, intron 2 of 23)	-17157.0	NR_037236	100526533.0		NR_037236	ENSMUSG00000093081	Mir3075	mir-3075|mmu-mir-3075	microRNA 3075	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91182345-7	chr2	91182191	91182391	+	895.357117	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177719, intron 1 of 34)	intron (NM_001177719, intron 1 of 34)	756.0	NM_001177719	228355.0	Mm.36410	NM_145527	ENSMUSG00000040687	Madd	9630059K23Rik|IG20	MAP-kinase activating death domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-36624938-2	chr16	36624838	36625038	+	890.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019388, intron 2 of 7)	intron (NM_019388, intron 2 of 7)	41139.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-88201400-3	chr11	88201299	88201499	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291270, intron 1 of 4)	intron (NM_001291270, intron 1 of 4)	-2989.0	NM_024174	64656.0	Mm.168680	NM_024174	ENSMUSG00000023723	Mrps23	D11Bwg1153e|MRP-S23|Rpms23|S23mt	mitochondrial ribosomal protein S23	protein-coding	1.17670926957253	1.56486673109149	1.73039489836178	2.55186063217631	2.35038737003986	2.30366481650858	2.08461691676313	3.10134043390825	1.50107919200693	0.123929198792475	0.551658122846446
Merged-chr11-117199047-2	chr11	117198947	117199147	+	911.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113486)	promoter-TSS (NM_001113486)	-614.0	NM_001113486	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55719917-3	chr19	55719827	55720027	+	666.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17723.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59456734-4	chr15	59456627	59456827	+	953.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026746, intron 4 of 6)	intron (NM_026746, intron 4 of 6)	82529.0	NM_001164604	68501.0	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-84949441-2	chr15	84949341	84949541	+	569.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033273, intron 9 of 9)	intron (NM_001033273, intron 9 of 9)	2182.0	NR_037206	100526461.0		NR_037206	ENSMUSG00000080441	Mir1249	mir-1249|mmu-mir-1249	microRNA 1249	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-112671349-2	chr13	112671249	112671449	+	542.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178746, intron 2 of 14)	B3|SINE|B2	10583.0	NM_178746	268706.0	Mm.40834	NM_175376	ENSMUSG00000047789	Slc38a9	4833412L08Rik|6720411P22Rik|9130023D20Rik|9430067K09Rik|A730092C09	solute carrier family 38, member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-48458360-1	chr14	48458260	48458460	+	748.0	f1_c57bl6.idr	intron (NM_001310584, intron 4 of 16)	intron (NM_001310584, intron 4 of 16)	12008.0	NR_132324	218989.0	Mm.85211	NM_172600	ENSMUSG00000036339	Tmem260	5930435P15|6720456H20Rik	transmembrane protein 260	protein-coding	1.99880494736472	2.25070996824545	3.3722559686038	3.45042133386404	2.4181504952974	2.0696499187144	2.62737235609126	2.75951845299098	-0.836257490618078	0.287967879203413	0.793775145048831
Merged-chr11-51535434-2	chr11	51535334	51535534	+	544.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153393, intron 5 of 28)	B3|SINE|B2	-49323.0	NM_028398	72947.0	Mm.256875	NM_028398	ENSMUSG00000020359	Phykpl	2900006B13Rik|Agxt2l2	5-phosphohydroxy-L-lysine phospholyase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-88343518-1	chr4	88343418	88343618	+	756.0	f0_balb.idr	intron (NM_001081184, intron 26 of 43)	intron (NM_001081184, intron 26 of 43)	95408.0	NM_025760	66775.0	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-149446044-2	chr4	149445944	149446144	+	587.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8924.0	NM_022020	63954.0	Mm.46023	NM_022020	ENSMUSG00000028996	Rbp7	1110002J23Rik|CRBP-III	retinol binding protein 7, cellular	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-3582360-2	chr15	3582260	3582460	+	568.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286370)	promoter-TSS (NM_001286370)	-518.0	NM_001286370	14600.0	Mm.3986	NM_010284	ENSMUSG00000055737	Ghr	GHBP|GHR/BP	growth hormone receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-61400020-11	chr18	61399956	61400156	+	998.3485109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133249, intron 1 of 11)	CpG	375.0	NM_133249	170826.0	Mm.415302	NM_133249	ENSMUSG00000033871	Ppargc1b	4631412G21Rik|Perc	peroxisome proliferative activated receptor, gamma, coactivator 1 beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-17051158-3	chr7	17051055	17051255	+	681.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001162950, exon 5 of 15)	exon (NM_001162950, exon 5 of 15)	5524.0	NM_016868	53417.0	Mm.135110	NM_016868	ENSMUSG00000004328	Hif3a	Ipas|MOP7|NEPAS|bHLHe17	hypoxia inducible factor 3, alpha subunit	protein-coding	-1.21575676353841	-1.1882771616738	-1.1995328574972	-1.2087786211754	-1.21524488394202	-1.18583800543462	-1.19698481468061	-0.540595393272118	2.74438217975722	0.425994238664144	1
Merged-chr2-129372153-1	chr2	129372053	129372253	+	565.0	f1_c57bl6.idr	intron (NR_015474, intron 1 of 2)	intron (NR_015474, intron 1 of 2)	-1014.0	NM_008361	16176.0	Mm.222830	NM_008361	ENSMUSG00000027398	Il1b	IL-1beta|Il-1b	interleukin 1 beta	protein-coding	1.66202314751734	1.11264697004333	1.8040515270017	2.07059302006185	1.67580265311731	1.11734093487523	1.81857942587674	2.3264231672094	0.299024940732091	0.794137778293866	0.998431161219273
Merged-chr12-73606072-4	chr12	73605982	73606182	+	921.05835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001313977, intron 2 of 14)	MTD|LTR|ERVL-MaLR	21286.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-62731452-1	chr11	62731352	62731552	+	666.0	f0_c57.idr	Intergenic	Intergenic	-2359.0	NM_133208	170740.0	Mm.339982	NM_133208	ENSMUSG00000005267	Zfp287	B230333C16Rik|SKAT-2|Skat2|Znf287|mszf16|mszf74	zinc finger protein 287	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-77501624-2	chr11	77501524	77501724	+	894.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001004144, intron 7 of 19)	intron (NM_001004144, intron 7 of 19)	8212.0	NM_001004144	216963.0	Mm.290182	NM_001004144	ENSMUSG00000011877	Git1	Cat-1|p95Cat	G protein-coupled receptor kinase-interactor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140340696-2	chr5	140340596	140340796	+	651.25	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172277, exon 11 of 11)	3' UTR (NM_172277, exon 11 of 11)	8740.0	NM_001356584	17766.0	Mm.118846	NM_008637	ENSMUSG00000036639	Nudt1	Mth1	nudix (nucleoside diphosphate linked moiety X)-type motif 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-51636372-4	chr6	51636272	51636472	+	991.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	91079.0	NM_001361577	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-62630653-4	chr2	62630544	62630744	+	887.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164477, intron 2 of 14)	intron (NM_001164477, intron 2 of 14)	15611.0	NM_027835	71586.0	Mm.136224	NM_027835	ENSMUSG00000026896	Ifih1	9130009C22Rik|Helicard|Hlcd|MDA5|RLR-2	interferon induced with helicase C domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-29784986-4	chr5	29784904	29785104	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037940, intron 9 of 9)	intron (NM_001037940, intron 9 of 9)	-49068.0	NR_028426	332993.0	Mm.473746	NR_028426		Gm5129	EG332993	predicted gene 5129	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-87454484-2	chr11	87454384	87454584	+	911.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199293, intron 2 of 30)	PB1D10|SINE|Alu	26893.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-79642745-2	chr11	79642645	79642845	+	601.541626	f1_balb.idr|f1_c57bl6.idr	intron (NM_175543, intron 3 of 14)	(TGAG)n|Simple_repeat|Simple_repeat	-19582.0	NR_003283	790912.0	Mm.447313	NR_003283	ENSMUSG00000087434	Rab11fip4os1	Gm11202	RAB11 family interacting protein 4 (class II), opposite strand 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-60688077-4	chr9	60687976	60688176	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145616)	promoter-TSS (NM_145616)	58.0	NM_001146046	102747.0	Mm.269413	NM_145616	ENSMUSG00000047766	Lrrc49	AI430817|AW050057|D430025H09Rik|PGs4|p79	leucine rich repeat containing 49	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33191814-3	chr16	33191687	33191887	+	875.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176840, intron 1 of 12)	LTR40a|LTR|ERVL	6716.0	NM_176840	106326.0	Mm.486405	NM_176840	ENSMUSG00000022807	Osbpl11	9430097N02Rik|AI132306|AU019795|ORP-11	oxysterol binding protein-like 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-79107016-4	chr14	79106915	79107115	+	915.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027906, intron 37 of 44)	intron (NM_027906, intron 37 of 44)	92175.0	NR_152203	100043765.0	Mm.435553	NR_152203	ENSMUSG00000115111	Gm4632	-	predicted gene 4632	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-40402484-1	chr11	40402384	40402584	+	810.5	f0_balb.idr	Intergenic	Intergenic	290198.0	NM_134017	108645.0	Mm.293771	NM_134017	ENSMUSG00000042032	Mat2b	1110064C04Rik|2410018D16Rik|AI182287|AU022853|MAT-II|MATIIbeta|TGR	methionine adenosyltransferase II, beta	protein-coding	-0.711713561034065	-0.721883571325813	-1.07191524228021	-1.07790974157835	-1.08061855601154	-1.05832924914531	-1.06938745358593	-1.07757418096765	-2.67595575402854	0.401150602523657	1
Merged-chr5-129000843-1	chr5	129000743	129000943	+	818.0	f1_c57bl6.idr	intron (NR_152615, intron 1 of 11)	intron (NR_152615, intron 1 of 11)	7729.0	NR_152615	13852.0	Mm.260716	NM_007941	ENSMUSG00000029428	Stx2	AW538950|Epim|G1-536-1|Syn-2|repro34	syntaxin 2	protein-coding	0.126763214540588	0.00939730205882933	0.00481637008565269	0.152634676967293	0.247034136587636	0.192678357552814	0.172563125611388	0.594450193785445	2.20156725054799	0.262137146196452	1
Merged-chr2-32975878-2	chr2	32975778	32975978	+	556.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_151460, intron 6 of 8)	intron (NR_151460, intron 6 of 8)	6205.0	NR_151461	56017.0	Mm.305754	NM_019488	ENSMUSG00000026791	Slc2a8	D2Ertd44e|GLUT8|GlutX1	solute carrier family 2, (facilitated glucose transporter), member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10739004-4	chr19	10738900	10739100	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007650)	promoter-TSS (NM_007650)	-26.0	NM_007650	12507.0	Mm.779	NM_007650	ENSMUSG00000024669	Cd5	Ly-1|Ly-12|Ly-A|Lyt-1	CD5 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-150678577-4	chr2	150678492	150678692	+	832.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10352.0	NM_080575	68738.0	Mm.7044	NM_080575	ENSMUSG00000027452	Acss1	1110032O15Rik|AI788978|Acas2|Acas2l|AceCS2	acyl-CoA synthetase short-chain family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-24687534-3	chr13	24687441	24687641	+	757.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080381, intron 8 of 14)	intron (NM_001080381, intron 8 of 14)	48893.0	NM_029679	193385.0	Mm.217319	NM_029679	ENSMUSG00000036006	Ripor2	Fam65b	RHO family interacting cell polarization regulator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-25376725-2	chr2	25376625	25376825	+	772.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001290407, exon 6 of 6)	3' UTR (NM_001290407, exon 6 of 6)	4690.0	NM_001081085	72080.0	Mm.250293	NM_001081085	ENSMUSG00000026955	Sapcd2	2010317E24Rik|6030458L21Rik|AL033337|ang	suppressor APC domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-84732319-2	chr3	84732219	84732419	+	635.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	66127.0	NM_177260	320782.0	Mm.107370	NM_177260	ENSMUSG00000056498	Tmem154	9930117H01Rik	transmembrane protein 154	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-108719880-2	chr8	108719780	108719980	+	662.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007496, intron 1 of 9)	intron (NM_007496, intron 1 of 9)	5236.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-108955944-2	chr8	108955875	108956075	+	654.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_007496, exon 10 of 10)	exon (NM_007496, exon 10 of 10)	19115.0	NR_037295	100526511.0		NR_037295	ENSMUSG00000093241	Mir3108	mir-3108|mmu-mir-3108	microRNA 3108	ncRNA	0.779205073080159	0.206719088249352	1.00056507688712	0.193936372478017	0.791301961517908	0.208336216800817	0.201111367526956	0.19491370883273	-1.2820364711105	0.537595491429749	1
Merged-chr3-97629445-2	chr3	97629345	97629545	+	665.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010232, intron 2 of 8)	(A)n|Simple_repeat|Simple_repeat	426.0	NM_001355119	14263.0	Mm.385180	NM_010232	ENSMUSG00000028088	Fmo5	5033418D19Rik|AI195026	flavin containing monooxygenase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-103443962-4	chr11	103443862	103444062	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR16B_MM|LTR|ERVK	-31298.0	NM_183034	353047.0	Mm.18556	NM_183034	ENSMUSG00000034247	Plekhm1	AP162|B2|BC038943|D330036J23Rik	pleckstrin homology domain containing, family M (with RUN domain) member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-118653224-2	chr7	118653124	118653324	+	747.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028930, intron 8 of 17)	intron (NM_028930, intron 8 of 17)	19488.0	NM_028930	74424.0	Mm.11068	NM_028930	ENSMUSG00000030650	Tmc5	4932443L08Rik|AU016085	transmembrane channel-like gene family 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-87252382-2	chr17	87252294	87252494	+	808.583374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	13553.0	NM_176808	193813.0	Mm.30251	NM_139295	ENSMUSG00000024150	Mcfd2	1810021C21Rik|F5f8d|Lman1ip|Sdnsf	multiple coagulation factor deficiency 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-54902020-1	chr18	54901920	54902120	+	574.333313	f0_balb.idr	intron (NM_001360787, intron 2 of 8)	intron (NM_001360787, intron 2 of 8)	88160.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-38415831-6	chr18	38415754	38415954	+	991.257935	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3053.0	NM_022996	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126585716-4	chr7	126585617	126585817	+	829.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146311)	promoter-TSS (NM_001146311)	100.0	NM_001146311	12752.0	Mm.268930	NM_009907	ENSMUSG00000030720	Cln3	AI323623	ceroid lipofuscinosis, neuronal 3, juvenile (Batten, Spielmeyer-Vogt disease)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-8519136-1	chr12	8519036	8519236	+	676.0	f0_balb.idr	Intergenic	Intergenic	-19127.0	NM_007483	11852.0	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	0.218232211555634	-0.138348248829628	0.307386222842998	-0.146866219833979	-0.152102373294971	0.480519136717014	-0.142097628075439	-0.146218593158066	-0.223523760971605	0.924372500122659	1
Merged-chr7-45123295-4	chr7	45123195	45123395	+	814.983337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_000004)	promoter-TSS (NR_000004)	-184.0	NR_000004	27212.0		NR_000004	ENSMUSG00000064767	Snord35b	Rnu35b|U35	small nucleolar RNA, C/D box 35B	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-73123794-4	chr12	73123694	73123894	+	946.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008612)	promoter-TSS (NM_008612)	77.0	NM_008612	17420.0	Mm.246750	NM_008612	ENSMUSG00000021103	Mnat1	E130115E11Rik|MAT1|P36	menage a trois 1	protein-coding	4.18669222625859	4.33074582132248	4.00033135265056	4.43962797739459	4.21903080576365	4.29845851410317	4.03080581166841	4.36759234997084	-0.0187057780045006	0.962928290942714	0.998431161219273
Merged-chr9-64744503-2	chr9	64744403	64744603	+	550.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6747.0	NM_017382	53869.0	Mm.1387	NM_017382	ENSMUSG00000004771	Rab11a	-	RAB11A, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-49792688-4	chr16	49792611	49792811	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62943.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-81336986-2	chr7	81336886	81337086	+	602.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER5|LTR|ERV1	8248.0	NM_009092	20068.0	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34438740-2	chr17	34438631	34438831	+	842.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001177, intron 6 of 19)	intron (NM_001001177, intron 6 of 19)	37206.0	NM_030746	632126.0	Mm.484958	NM_030746	ENSMUSG00000058435	Btnl4	Btn3a3|EG632126|NG11	butyrophilin-like 4	protein-coding	-0.276222659285047	-0.262679044821026	-0.267120573835623	-0.270544365541989	0.370969461368245	0.235821726506905	-0.086538963967825	-0.269946420065831	3.73535584834062	0.116671204955983	1
Merged-chr4-117210912-2	chr4	117210812	117211012	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	U5|snRNA|snRNA	-28288.0	NM_134471	73804.0	Mm.247651	NM_134471	ENSMUSG00000028678	Kif2c	4930402F02Rik|ESTM5|Knsl6|MCAK|X83316	kinesin family member 2C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-106612896-4	chr7	106612806	106613006	+	959.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001277180, intron 2 of 2)	intron (NM_001277180, intron 2 of 2)	31739.0	NM_001277179	434223.0	Mm.276443	NM_001277179		Gm1966	-	predicted gene 1966	protein-coding	2.44723798495807	2.61226602081814	2.51897201791652	2.72006855531109	3.7350338458995	3.45307349008457	3.05808447442167	3.99756594350959	1.77590633495296	0.00440869954238068	0.060613724724389
Merged-chr16-30416549-4	chr16	30416452	30416652	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28022.0	NM_001128096	224088.0	Mm.8924	NM_001128094	ENSMUSG00000022533	Atp13a3	AU022875|Gm1745|Gm541|Gm542	ATPase type 13A3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-99941080-2	chr12	99940980	99941180	+	880.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028354, intron 14 of 15)	intron (NM_028354, intron 14 of 15)	-23419.0	NM_001164426	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-14311594-2	chr16	14311494	14311694	+	712.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_025345, intron 2 of 4)	B2_Mm2|SINE|B2	5738.0	NM_025345	66086.0	Mm.42072	NM_025345	ENSMUSG00000022677	Fopnl	0610037P05Rik	Fgfr1op N-terminal like	protein-coding	-0.711713561034065	-0.721883571325813	-1.07191524228021	-1.07790974157835	-1.08061855601154	-1.05832924914531	-1.06938745358593	-1.07757418096765	-2.67595575402854	0.401150602523657	1
Merged-chr14-20082343-2	chr14	20082243	20082443	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026209, intron 1 of 1)	RMER10B|LTR|ERVL	829.0	NM_026209	67509.0	Mm.292423	NM_026209	ENSMUSG00000045107	Saysd1	1810063B07Rik|4930488P03Rik	SAYSVFN motif domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-12501636-4	chr19	12501516	12501716	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_172442, exon 1 of 9)	5' UTR (NM_172442, exon 1 of 9)	380.0	NM_172442	207521.0	Mm.247695	NM_172442	ENSMUSG00000039982	Dtx4	AI449438|BC044798|D930042H13|RNF155	deltex 4, E3 ubiquitin ligase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5731774-4	chr19	5731659	5731859	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020491)	promoter-TSS (NM_020491)	-27.0	NM_020491	56390.0	Mm.455818	NM_020491	ENSMUSG00000079478	Sssca1	1500016H19Rik|C184L	Sjogren syndrome/scleroderma autoantigen 1	protein-coding	3.01608802614739	2.90945290576656	4.00479811513176	3.59423273740277	3.13335587231469	2.93213902891721	3.85696915746027	4.16292534213865	0.247104614508256	0.676352460811374	0.99440487726309
Merged-chr11-90227306-2	chr11	90227206	90227406	+	561.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-22170.0	NM_026178	67468.0	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-11540352-4	chr19	11540256	11540456	+	982.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025658, intron 1 of 6)	intron (NM_025658, intron 1 of 6)	3507.0	NM_025658	66607.0	Mm.441056	NM_025658	ENSMUSG00000024678	Ms4a4d	2210417J23Rik	membrane-spanning 4-domains, subfamily A, member 4D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-74442153-6	chr17	74442062	74442262	+	992.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033367, intron 4 of 8)	MTA_Mm|LTR|ERVL-MaLR	16946.0	NM_001033367	268973.0	Mm.311884	NM_001033367	ENSMUSG00000039193	Nlrc4	9530011P19Rik|CLAN|CLAN1|CLANA|CLANB|CLANC|CLAND|Card12|IPAF	NLR family, CARD domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-45678363-1	chr14	45678263	45678463	+	564.0	f1_balb.idr	Intergenic	Intergenic	-20220.0	NM_001042719	114874.0	Mm.121918	NM_176845	ENSMUSG00000037697	Ddhd1	Mir5131|PA-PLA1	DDHD domain containing 1	protein-coding	0.0436174704436626	-0.0786960157713345	0.353034572783067	-0.08694013628495	0.168078029745731	-0.0776439571360965	-0.0823285044395876	0.524862524178046	0.730273833356686	0.737635318057469	1
Merged-chr1-183345116-2	chr1	183345016	183345216	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177389, intron 6 of 26)	CpG	24449.0	NM_177389	338366.0	Mm.41152	NM_177389		Mia3	9130229H14Rik|A930039G15Rik|AU022327|B230399H06Rik|C80126|Gm1525|TANGO1|Tango	melanoma inhibitory activity 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-101150216-2	chr4	101150116	101150316	+	681.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_183024, intron 11 of 11)	intron (NM_183024, intron 11 of 11)	81178.0	NM_183024	242570.0	Mm.185636	NM_183024	ENSMUSG00000035275	Raver2	A430091O22Rik	ribonucleoprotein, PTB-binding 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-73886141-3	chr8	73886046	73886246	+	864.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-532606.0	NM_010687	16795.0	Mm.324371	NM_010687	ENSMUSG00000004383	Large1	BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd	LARGE xylosyl- and glucuronyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21840385-2	chr9	21840285	21840485	+	762.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177030, intron 9 of 49)	intron (NM_177030, intron 9 of 49)	4875.0	NM_001080940	624219.0	Mm.440264	NM_001080940	ENSMUSG00000047822	Angptl8	EG624219|Gm6484|Rifl	angiopoietin-like 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-151819411-4	chr1	151819285	151819485	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001311166, exon 20 of 20)	3' UTR (NM_001311166, exon 20 of 20)	64011.0	NM_001311166	66967.0	Mm.337691	NM_001039644	ENSMUSG00000043019	Edem3	2310050N11Rik	ER degradation enhancer, mannosidase alpha-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-69208831-4	chr3	69208718	69208918	+	920.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-13601.0	NM_027843	71619.0	Mm.98122	NM_027843	ENSMUSG00000098207	Arl14	9130014L17Rik|Arf7	ADP-ribosylation factor-like 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-90511230-1	chr3	90511130	90511330	+	639.0	f1_balb.idr	exon (NM_011309, exon 3 of 3)	exon (NM_011309, exon 3 of 3)	-1732.0	NM_001293778	66511.0	Mm.154136	NM_023215	ENSMUSG00000001017	Chtop	2500003M10Rik|Fop|Srag	chromatin target of PRMT1	protein-coding	0.320863640280353	0.203283606896054	0.19781498547507	0.595514480101089	0.727543614075024	0.545360591241296	0.512745134812167	0.194342741406701	1.22878310891331	0.515758336560594	1
Merged-chr3-127077587-2	chr3	127077482	127077682	+	744.333374	f0_c57.idr|f1_c57bl6.idr	exon (NM_001327939, exon 5 of 46)	exon (NM_001327939, exon 5 of 46)	-79130.0	NM_178655	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	3.25417189732091	3.29010363515879	3.24257893360774	2.48127038673296	1.14057615681683	1.2936987031655	2.32551295692248	1.20535773715547	-3.40306759277339	0.000527288140630848	0.0116723304636327
Merged-chr4-24897554-2	chr4	24897454	24897654	+	906.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026742)	promoter-TSS (NM_026742)	-529.0	NM_026742	68493.0	Mm.204831	NM_026742	ENSMUSG00000028261	Ndufaf4	1110007M04Rik|3000003G13Rik|AW214064	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102692742-4	chr12	102692642	102692842	+	942.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172584, intron 1 of 9)	intron (NM_172584, intron 1 of 9)	-7722.0	NR_035457	100316812.0		NR_035457	ENSMUSG00000089324	Mir1936	mir-1936|mmu-mir-1936	microRNA 1936	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-67232609-3	chr7	67232479	67232679	+	685.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001291191, exon 11 of 11)	3' UTR (NM_001291191, exon 11 of 11)	9963.0	NM_001191051	75099.0	Mm.121691	NM_175215	ENSMUSG00000043831	Lysmd4	4930506D23Rik	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19024860-4	chr7	19024735	19024935	+	965.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360713, intron 1 of 22)	intron (NM_001360713, intron 1 of 22)	458.0	NM_026605	68188.0	Mm.130902	NM_026605	ENSMUSG00000023118	Sympk	1500016F02Rik|4632415H16Rik|AA125406|AI449890|SPK|SYM	symplekin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-166788138-4	chr1	166788053	166788253	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-106308.0	NM_001347135	240894.0	Mm.246610	NM_172844	ENSMUSG00000026560	Fmo9	4831428F09Rik	flavin containing monooxygenase 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71538276-2	chr8	71538163	71538363	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198095)	promoter-TSS (NM_198095)	-826.0	NM_198095	69550.0	Mm.260325	NM_198095	ENSMUSG00000046718	Bst2	2310015I10Rik|Bst-2|C87040|CD317|DAMP-1|GREG	bone marrow stromal cell antigen 2	protein-coding	1.83964930705818	0.784676917333588	1.00678564404996	1.87867080025276	0.729102981582751	1.05050368176503	0.770065549661783	2.12262630532681	-0.420357015654982	0.770710657020149	0.998431161219273
Merged-chr6-72737773-2	chr6	72737673	72737873	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001079822, intron 3 of 12)	intron (NM_001079822, intron 3 of 12)	51272.0	NM_001079822	21415.0	Mm.440067	NM_009332	ENSMUSG00000055799	Tcf7l1	Tcf-3|Tcf3|bHLHb21	transcription factor 7 like 1 (T cell specific, HMG box)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-97943716-2	chr15	97943616	97943816	+	787.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20513.0	NM_001356508	380967.0	Mm.196630	NM_201359	ENSMUSG00000052369	Tmem106c	AI046681|BC046621|D15Ertd405e	transmembrane protein 106C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99828368-4	chr7	99828278	99828478	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016720)	promoter-TSS (NM_016720)	39.0	NM_016720	50877.0	Mm.103703	NM_016720	ENSMUSG00000035239	Neu3	-	neuraminidase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-8802866-2	chr10	8802766	8802966	+	553.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 4 of 19)	intron (NM_175155, intron 4 of 19)	83204.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	-0.429165910719733	-0.873612895455471	-0.880042310359133	-0.882147047040279	-0.515285789036623	-0.870994549976101	-0.879439369138014	-0.881779851595733	-0.36230783815378	0.907723332250447	1
Merged-chr12-101892301-4	chr12	101892203	101892403	+	970.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028446, intron 7 of 20)	intron (NM_028446, intron 7 of 20)	-20364.0	NR_152255	100504056.0	Mm.416837	NR_152255		Gm20036	-	predicted gene, 20036	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-80668747-2	chr1	80668647	80668847	+	828.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175291, intron 1 of 55)	Lx8b|LINE|L1	-3395.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-114838111-4	chr6	114838021	114838221	+	952.2291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253718, intron 19 of 19)	MTD|LTR|ERVL-MaLR	83700.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-92637015-4	chr13	92636936	92637136	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172588, intron 1 of 11)	intron (NM_172588, intron 1 of 11)	25898.0	NM_172588	218442.0	Mm.297970	NM_172588	ENSMUSG00000021703	Serinc5	A130038L21Rik|AIGP3|C86123|TPO1	serine incorporator 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-133525659-5	chr3	133525515	133525715	+	964.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040400, intron 1 of 10)	B1_Mus1|SINE|Alu	18775.0	NM_001040400	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-29385304-2	chr17	29385152	29385352	+	695.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24338.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	0.298573194357192	0.993760577047301	0.020362422630344	0.0151768533811132	0.168872497455947	0.418572310509121	0.0218396920937591	0.0160848032680359	-1.62345837777778	0.429055331639252	1
Merged-chr2-120252647-2	chr2	120252547	120252747	+	569.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-7312.0	NM_177845	329502.0	Mm.330505	NM_177845	ENSMUSG00000050211	Pla2g4e	2310026J01Rik|C230096D22|Pla2epsilon	phospholipase A2, group IVE	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-145112365-2	chr5	145112283	145112483	+	797.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1873.0	NM_023142	11867.0	Mm.30010	NM_023142	ENSMUSG00000029622	Arpc1b	41kDa|AA408064|AA408534|AA571392|AF007010|AW208418|L72|SOP2Hs|p41-ARC	actin related protein 2/3 complex, subunit 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-157047691-4	chr1	157047633	157047833	+	930.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60917.0	NM_001305059	73435.0	Mm.116705	NM_028540	ENSMUSG00000026592	Tex35	1700057K13Rik	testis expressed 35	protein-coding	-0.121675109153652	-0.10035789366532	-0.107263396999718	0.783490965572953	-0.120323009260964	-0.0988113112068344	0.762868933021269	-0.111699347996652	-0.0477558131160935	0.984043153454269	1
Merged-chr4-33245099-4	chr4	33245018	33245218	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001033225)	TTS (NM_001033225)	3669.0	NM_001033225	108767.0	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-77605726-2	chr18	77605626	77605826	+	644.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER5B|DNA|hAT-Charlie	-40590.0	NM_001164504	225743.0	Mm.23293	NM_001164504	ENSMUSG00000025427	Rnf165	2900024M11Rik|AI427432|Akd2|Ark2c|G630064H08Rik|Gm96	ring finger protein 165	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99456576-4	chr15	99456484	99456684	+	877.491699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001884, intron 1 of 12)	intron (NM_001001884, intron 1 of 12)	1164.0	NM_001001884	380969.0	Mm.22915	NM_001001884	ENSMUSG00000023009	Nckap5l	C230021P08Rik|Cep169	NCK-associated protein 5-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-145240340-4	chr4	145240229	145240429	+	922.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011610, intron 1 of 9)	intron (NM_011610, intron 1 of 9)	6541.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28952466-4	chr17	28952352	28952552	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356299)	promoter-TSS (NM_001356299)	16.0	NM_001356299	66989.0	Mm.435	NM_025888	ENSMUSG00000005936	Kctd20	2410004N11Rik|AI451943|AW541186|D17Ertd562e	potassium channel tetramerisation domain containing 20	protein-coding	3.47628212569827	3.33164944481909	3.01463084017788	3.5253341355765	3.44328548821009	3.6182316335701	2.91919817066898	2.94441514651312	-0.142592757675188	0.804544793108436	0.998431161219273
Merged-chr17-26973711-2	chr17	26973611	26973811	+	815.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001005916, exon 2 of 2)	exon (NM_001005916, exon 2 of 2)	532.0	NM_001005916	474156.0	Mm.328890	NM_001005916	ENSMUSG00000079605	Zbtb9	3930402F13Rik	zinc finger and BTB domain containing 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-11469452-4	chr19	11469347	11469547	+	974.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028595)	promoter-TSS (NM_028595)	79.0	NM_028595	73656.0	Mm.440719	NM_028595	ENSMUSG00000079419	Ms4a6c	2200009H22Rik|2210417N07Rik	membrane-spanning 4-domains, subfamily A, member 6C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-8747351-4	chr3	8747257	8747457	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-80319.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-5522589-2	chr11	5522489	5522689	+	551.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013842, intron 2 of 4)	L1_Rod|LINE|L1	1948.0	NM_001271730	22433.0	Mm.469937	NM_013842	ENSMUSG00000020484	Xbp1	D11Ertd39e|TREB-5|TREB5|XBP-1	X-box binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165070498-3	chr2	165070379	165070579	+	842.211121	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027852, intron 7 of 7)	intron (NR_027852, intron 7 of 7)	14843.0	NM_011611	21939.0	Mm.271833	NM_011611	ENSMUSG00000017652	Cd40	AI326936|Bp50|GP39|HIGM1|IGM|IMD3|T-BAM|TRAP|Tnfrsf5|p50	CD40 antigen	protein-coding	4.19019623288825	3.68492683371631	4.02628691372799	4.04007045438002	3.9286552609397	4.315155642083	3.91821719832648	4.45912123053327	0.23190130340072	0.59297466406714	0.9706660979479
Merged-chr9-90098219-2	chr9	90098119	90098319	+	565.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039147, intron 6 of 12)	B2_Mm2|SINE|B2	16601.0	NM_001039147	21761.0	Mm.426209	NM_024431	ENSMUSG00000062270	Morf4l1	MORFRG15|MRG15|TEG-189|Tex189|mKIAA4002	mortality factor 4 like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-83131586-2	chr15	83131486	83131686	+	796.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_178627, exon 7 of 9)	exon (NM_178627, exon 7 of 9)	-8785.0	NM_029101	74778.0	Mm.30056	NM_029101	ENSMUSG00000018040	Rrp7a	1110014J01Rik|AA408146|Kheg1	ribosomal RNA processing 7 homolog A (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-75876113-4	chr15	75876015	75876215	+	984.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	12608.0	NM_001282443	223645.0		NM_001282443	ENSMUSG00000098678	Mroh6	Gm19570	maestro heat-like repeat family member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-80255214-4	chr18	80255112	80255312	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164420)	promoter-TSS (NM_001164420)	-33.0	NM_001164420	66943.0	Mm.29247	NM_025861	ENSMUSG00000034006	Pqlc1	2310009N05Rik|4933425L21Rik|5730564E11Rik|C78974	PQ loop repeat containing 1	protein-coding	3.72742405230587	3.41686759660918	3.39608836472836	3.00225718900483	3.58812177830174	3.86026225561242	3.50952640594509	3.55898295814376	0.335680424818484	0.522847473311275	0.947836760490745
Merged-chr18-62045135-4	chr18	62044987	62045187	+	788.341675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	92012.0	NM_172628	225608.0	Mm.262320	NM_172628	ENSMUSG00000045629	Sh3tc2	D430044G18Rik	SH3 domain and tetratricopeptide repeats 2	protein-coding	2.66675069040372	2.54353631598309	3.20774357795798	1.44754830150944	2.28071349475	2.41555394051269	3.08471344000924	2.91147791606706	0.194390297332351	0.814518281382583	0.998431161219273
Merged-chr12-25098915-4	chr12	25098822	25099022	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2830.0	NM_010496	15902.0	Mm.34871	NM_010496	ENSMUSG00000020644	Id2	AI255428|C78922|Idb2|bHLHb26	inhibitor of DNA binding 2	protein-coding	4.24346062158625	4.99351766748796	4.19105451063937	3.61825470473708	4.41256810608598	5.37482984974444	5.31250213363283	4.09451740542146	0.692559958600467	0.119204681832423	0.54133905095587
Merged-chr5-114660689-1	chr5	114660589	114660789	+	581.0	f1_c57bl6.idr	Intergenic	Intergenic	-2268.0	NM_022017	63873.0	Mm.266450	NM_022017	ENSMUSG00000014158	Trpv4	0610033B08Rik|OTRPC4|Trp12|VR-OAC|VRL-2|VROAC	transient receptor potential cation channel, subfamily V, member 4	protein-coding	1.73989712066707	2.50018314834293	0.97532652114968	2.47556708458475	1.33699126121878	1.00741387410959	0.981226030238025	2.07934177434199	-1.66207626325546	0.179490921258577	0.650876105156279
Merged-chr2-27694347-2	chr2	27694247	27694447	+	654.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011305, intron 1 of 9)	intron (NM_011305, intron 1 of 9)	-14945.0	NM_001290481	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-14294673-4	chr14	14294573	14294773	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33440.0	NM_147027	18330.0	Mm.484338	NM_147027	ENSMUSG00000072707	Olfr31	MOR274-1|MTPCR53	olfactory receptor 31	protein-coding	4.3592382537687	5.33741297486972	4.51008716567619	4.44007670870578	4.2121888563616	4.46837780344662	3.99706142189319	4.07869810611701	-0.661357494670367	0.104096754453083	0.502934037554935
Merged-chr1-64123774-2	chr1	64123674	64123874	+	605.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2385.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-84201435-4	chr12	84201321	84201521	+	986.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163501, intron 1 of 12)	intron (NM_001163501, intron 1 of 12)	-7406.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141641810-1	chr4	141641710	141641910	+	576.0	f0_balb.idr	intron (NM_001347237, intron 4 of 18)	intron (NM_001347237, intron 4 of 18)	-17976.0	NM_001013780	384071.0	Mm.295682	NM_001013780	ENSMUSG00000040740	Slc25a34	Gm1369	solute carrier family 25, member 34	protein-coding	0.518278787290844	2.56707068865544	0.566905230491732	1.02219839630304	1.39556619897467	1.49259764208636	0.571850991736358	0.552339632500648	-1.21069517008922	0.426800756324059	0.902282768890413
Merged-chr4-150016263-2	chr4	150016163	150016363	+	671.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7240.0	NM_173371	100198.0	Mm.22183	NM_173371	ENSMUSG00000028980	H6pd	AI785303|G6pd1|Gpd-1|Gpd1	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	protein-coding	-0.31100293829558	-0.681961485230266	-0.685474528912957	-0.688184073646453	-0.692011594494468	-0.0465253939969776	-0.684699806280589	-0.687710780700492	0.971362747891114	0.738996152889555	1
Merged-chr19-6912188-2	chr19	6912110	6912310	+	635.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_007953, intron 6 of 6)	intron (NM_007953, intron 6 of 6)	2076.0	NR_105956	102466213.0		NR_105956	ENSMUSG00000098413	Mir6990	Gm27726|mmu-mir-6990	microRNA 6990	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-55148191-2	chr11	55148091	55148291	+	699.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_172258, intron 3 of 10)	intron (NM_172258, intron 3 of 10)	3515.0	NM_172258	215332.0	Mm.87054	NM_172258	ENSMUSG00000049491	Slc36a3	PAT3|TRAMD2|tramdorin2	solute carrier family 36 (proton/amino acid symporter), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-98813340-2	chr13	98813240	98813440	+	639.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172591, intron 1 of 25)	ID_B1|SINE|B4	2109.0	NM_172591	218503.0	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-113216097-3	chr12	113215983	113216183	+	717.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30180.0	NM_153776	69195.0	Mm.313244	NM_153776	ENSMUSG00000049036	Tmem121	2410008J05Rik|Hole	transmembrane protein 121	protein-coding	2.83840038620307	2.14305753252516	3.10020683099944	2.19140177388598	4.79419241613941	2.56903175175233	3.31538379519776	2.80451386218006	1.70416001925809	0.0211636580141678	0.186168708476065
Merged-chr7-100510838-2	chr7	100510738	100510938	+	908.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_153527, exon 3 of 8)	exon (NM_153527, exon 3 of 8)	3977.0	NM_153527	69387.0	Mm.278554	NM_153527	ENSMUSG00000030708	Dnajb13	1700014P03Rik|Tsarg	DnaJ heat shock protein family (Hsp40) member B13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-167000782-6	chr1	167000649	167000849	+	836.027771	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175461)	promoter-TSS (NM_175461)	-668.0	NM_175461	226610.0	Mm.389217	NM_175461	ENSMUSG00000060568	Fam78b	C030014K22Rik|C030020L09Rik	family with sequence similarity 78, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-80383279-4	chr11	80383221	80383421	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011751)	promoter-TSS (NM_011751)	42.0	NM_001130171	22680.0	Mm.401332	NM_011751	ENSMUSG00000017421	Zfp207	8430401D15Rik|BuGZ|Zep|Znf207	zinc finger protein 207	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-157075800-3	chr2	157075683	157075883	+	778.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164663, intron 1 of 14)	intron (NM_001164663, intron 1 of 14)	3482.0	NM_001164663	320706.0	Mm.79466	NM_001164663	ENSMUSG00000055485	Soga1	9830001H06Rik|AI426038|D430036N24Rik|Soga	suppressor of glucose, autophagy associated 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-101255229-4	chr4	101255132	101255332	+	859.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146145, intron 1 of 24)	B4A|SINE|B4	10050.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-125584162-2	chr7	125584062	125584262	+	639.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19267.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	-0.246632922717569	-0.303238803981219	-0.488010124067376	-0.490570639324697	-0.494170216533264	-0.0117473963412659	-0.487276132574742	-0.334613780762129	0.702993346677761	0.775714019728642	1
Merged-chr1-134196562-4	chr1	134196462	134196662	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357515, intron 3 of 10)	intron (NM_001357515, intron 3 of 10)	3114.0	NM_016749	53311.0	Mm.379067	NM_016749	ENSMUSG00000042451	Mybph	AI385643|MyBP-H	myosin binding protein H	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-7954628-2	chr10	7954528	7954728	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_138667, intron 1 of 6)	intron (NM_138667, intron 1 of 6)	1495.0	NM_138667	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-129533000-2	chr3	129532900	129533100	+	848.6666869999999	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_153368)	promoter-TSS (NR_153368)	-612.0	NR_153368	102639747.0	Mm.393257	NR_153368		Gm35986	-	predicted gene, 35986	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-9718228-4	chr10	9718125	9718325	+	878.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33503.0	NR_038036	620417.0	Mm.378085	NR_038036	ENSMUSG00000111901	Gm6150	-	predicted gene 6150	ncRNA	1.55999264291404	1.51187873206422	1.70218334560058	0.919282460499594	1.57373547630935	1.78201698317906	0.934657591234986	1.28402074906208	-0.0785663252726678	0.950792670730244	0.998431161219273
Merged-chr18-38993579-3	chr18	38993460	38993660	+	962.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175164, exon 1 of 23)	exon (NM_175164, exon 1 of 23)	415.0	NM_175164	71302.0	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-19186854-2	chr3	19186754	19186954	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253390)	promoter-TSS (NM_001253390)	-466.0	NM_001253390	67472.0	Mm.45125	NM_026182	ENSMUSG00000027601	Mtfr1	1300002C08Rik|1700080D04Rik|2810026O10Rik|4930579E05Rik|Chppr|Fam54a2	mitochondrial fission regulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-4193466-4	chr8	4193368	4193568	+	946.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346730, intron 10 of 19)	intron (NM_001346730, intron 10 of 19)	23844.0	NM_207203	73072.0	Mm.477379	NM_207203	ENSMUSG00000064125	Prr36	-	proline rich 36	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-37019121-2	chr19	37019021	37019221	+	645.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	93042.0	NM_001080706	107182.0	Mm.295062	NM_001080706	ENSMUSG00000040565	Btaf1	AI414500|AI447930|E430027O22Rik|TAF170	B-TFIID TATA-box binding protein associated factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101326030-2	chr15	101325930	101326130	+	872.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	32818.0	NR_033803	77717.0	Mm.391998	NR_033803	ENSMUSG00000075408	6030408B16Rik	AI225877	RIKEN cDNA 6030408B16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-43898692-4	chr19	43898604	43898804	+	922.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028029, intron 4 of 15)	intron (NM_028029, intron 4 of 15)	-18936.0	NM_001306088	71972.0	Mm.159024	NM_028029	ENSMUSG00000025195	Dnmbp	2410003L07Rik|2410003M15Rik|TUBA	dynamin binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-138443097-4	chr3	138442995	138443195	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007410)	promoter-TSS (NM_007410)	2.0	NM_007410	11532.0	Mm.3874	NM_007410	ENSMUSG00000028138	Adh5	Adh-5|Adh3|GSNOR	alcohol dehydrogenase 5 (class III), chi polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-45294518-5	chr9	45294419	45294619	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24581.0	NM_001013373	214531.0	Mm.394987	NM_001013373	ENSMUSG00000037129	Tmprss13	BC010843|Tpmrss13	transmembrane protease, serine 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-66014636-2	chr5	66014536	66014736	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10351.0	NR_027961	231253.0	Mm.436542	NM_177679	ENSMUSG00000054598	9130230L23Rik	-	RIKEN cDNA 9130230L23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-116628834-4	chr6	116628685	116628885	+	832.762512	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302440)	promoter-TSS (NM_001302440)	-84.0	NM_001302440	67255.0	Mm.18810	NM_026057	ENSMUSG00000059878	Zfp422	2900028O21Rik|AU041373|KOX15|Krox-25-2|Krox-26|Krox25|Krox26|Znf22	zinc finger protein 422	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-111290749-4	chr11	111290633	111290833	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	224569.0	NM_008425	16518.0	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-125069082-1	chr8	125068982	125069182	+	1000.0	f1_balb.idr	intron (NM_174854, intron 1 of 12)	intron (NM_174854, intron 1 of 12)	14887.0	NM_174854	244667.0	Mm.233504	NM_170596	ENSMUSG00000043051	Disc1	-	disrupted in schizophrenia 1	protein-coding	1.76190353882171	0.611482338528814	1.95950753992263	0.580187478913533	1.7073408771049	0.615336305779035	0.597940311138409	0.582635180228158	-1.3211126468252	0.675327442054099	0.99440487726309
Merged-chr17-35978869-2	chr17	35978769	35978969	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001282012, exon 1 of 4)	5' UTR (NM_001282012, exon 1 of 4)	154.0	NM_001282012	75210.0	Mm.40036	NM_145487	ENSMUSG00000038500	Prr3	4930540G07Rik|Cat56	proline-rich polypeptide 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69685910-4	chr11	69685790	69685990	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023517)	promoter-TSS (NM_023517)	-336.0	NM_023517	69583.0	Mm.8983	NM_023517	ENSMUSG00000089669	Tnfsf13	2310026N09Rik|April|Tall2|Tnlg7b|Trdl1	tumor necrosis factor (ligand) superfamily, member 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-20497752-3	chr1	20497653	20497853	+	869.544434	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153179, intron 35 of 66)	(CTG)n|Simple_repeat|Simple_repeat	120304.0	NM_153179	241035.0	Mm.249253	NM_153179	ENSMUSG00000043760	Pkhd1	AI118496|AI182499|FPC|Tigm1	polycystic kidney and hepatic disease 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-105127241-2	chr2	105127141	105127341	+	644.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015462)	promoter-TSS (NR_015462)	712.0	NM_144783	22431.0	Mm.389339	NM_144783	ENSMUSG00000016458	Wt1	D630046I19Rik|Wt-1	Wilms tumor 1 homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-123039555-2	chr8	123039455	123039655	+	906.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 1 of 12)	intron (NM_001081379, intron 1 of 12)	2729.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	-0.517111730945054	-0.321776993222096	-0.634601313275871	-0.636540165238047	-0.513725086972106	-0.315440404138231	-0.63404390992808	-0.636202686743487	0.0399545079667482	0.987596296034594	1
Merged-chr6-72345186-4	chr6	72345089	72345289	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138592)	promoter-TSS (NM_138592)	-14.0	NM_138592	28035.0	Mm.281900	NM_138592	ENSMUSG00000056305	Usp39	AA408960|AI894154|CGI-21|D6Wsu157e|SAD1	ubiquitin specific peptidase 39	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-25253070-4	chr9	25252989	25253189	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001359738, exon 1 of 13)	5' UTR (NM_001359738, exon 1 of 13)	197.0	NM_001359738	235072.0	Mm.270259	NM_009859	ENSMUSG00000001833	Sept7	Cdc10|E430034N22	septin 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-26764948-4	chr6	26764846	26765046	+	929.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	833520.0	NR_040771	626904.0	Mm.126787	NR_040771	ENSMUSG00000106799	Gm20756	-	predicted gene, 20756	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-35178034-1	chr6	35177934	35178134	+	959.0	f0_c57.idr	intron (NM_027513, intron 1 of 42)	CpG	418.0	NM_027513	70699.0	Mm.261208	NM_027513	ENSMUSG00000038759	Nup205	3830404O05Rik|AV248391|mKIAA0225	nucleoporin 205	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-70837497-3	chr6	70837403	70837603	+	693.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7012.0	NM_010121	13666.0	Mm.247167	NM_010121	ENSMUSG00000031668	Eif2ak3	Pek|Perk	eukaryotic translation initiation factor 2 alpha kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26605109-1	chr17	26605009	26605209	+	593.0	f1_c57bl6.idr	intron (NM_026170, intron 1 of 9)	intron (NM_026170, intron 1 of 9)	43597.0	NM_026170	67458.0	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	0.457240855107784	0.481862473196616	0.473825137240187	0.904580360976794	0.7396066566254	0.852246106813079	1.17118636077391	1.02167909762946	2.20381393715443	0.194124342768669	1
Merged-chr3-15012488-3	chr3	15012400	15012600	+	762.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41299.0	NR_040550	77127.0	Mm.195792	NR_040549	ENSMUSG00000098008	A930001A20Rik	-	RIKEN cDNA A930001A20 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-30695372-4	chr13	30695265	30695465	+	858.479126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134068, intron 3 of 7)	intron (NM_134068, intron 3 of 7)	35306.0	NM_134068	105352.0	Mm.289646	NM_134068	ENSMUSG00000069255	Dusp22	JKAP|JSP1|LMW-DSP2|MKPX	dual specificity phosphatase 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-17579952-4	chr10	17579854	17580054	+	845.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-143274.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-37022863-2	chr6	37022763	37022963	+	723.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347104, intron 15 of 32)	B3A|SINE|B2	-212684.0	NM_008973	19242.0	Mm.279690	NM_008973	ENSMUSG00000029838	Ptn	HARP|HB-GAM|HBBM|HBBN|HBGF-8|HBNF|OSF|Osf-1|Osf1	pleiotrophin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34033486-4	chr17	34033360	34033560	+	913.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205214, intron 2 of 9)	intron (NM_001205214, intron 2 of 9)	1110.0	NM_001205215	20182.0	Mm.1243	NM_011306	ENSMUSG00000039656	Rxrb	AL023085|H-2RIIBP|Nr2b2|RCoR-1|Rub	retinoid X receptor beta	protein-coding	2.84475525889611	2.8445659845949	2.16123139279291	2.36975821803143	2.92706310481162	2.39569084908021	2.32132472084962	2.25590449007372	-0.16788691822805	0.828604217551595	0.998431161219273
Merged-chr12-85712118-2	chr12	85712018	85712218	+	589.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CAAA)n|Simple_repeat|Simple_repeat	25398.0	NM_016767	53314.0	Mm.6672	NM_016767	ENSMUSG00000034266	Batf	B-ATF|SFA-2	basic leucine zipper transcription factor, ATF-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70603947-1	chr8	70603847	70604047	+	774.0	f1_balb.idr	intron (NM_133772, intron 1 of 16)	ORR1A3-int|LTR|ERVL-MaLR	4367.0	NM_133772	76900.0	Mm.6667	NM_133772	ENSMUSG00000070003	Ssbp4	1210002E11Rik|AW743380|Sspb4	single stranded DNA binding protein 4	protein-coding	1.4878558778293	2.48385422603636	1.6298910030856	2.56572143011211	3.40954443132547	1.39811963578535	3.53015227913808	3.11291193412057	1.79929068876082	0.0447846454829685	0.304376610557773
Merged-chr3-143598234-2	chr3	143598134	143598334	+	582.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	113909.0	NR_040405	621809.0	Mm.360134	NR_040405	ENSMUSG00000105279	Gm6260	EG621809	predicted gene 6260	ncRNA	0.323024141490565	0.357779797132787	-0.124512395643587	-0.128072785421571	-0.133090944232954	0.367003334677112	-0.123493169191951	-0.12745134937317	-0.926838055984856	0.694433033614239	1
Merged-chr8-46141084-4	chr8	46140985	46141185	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16939.0	NM_207213	102141.0	Mm.267258	NM_207213	ENSMUSG00000038291	Snx25	AI661919|Gm1699|Gm173|Sbbi31	sorting nexin 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-24961164-2	chr2	24961064	24961264	+	659.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_147179)	TTS (NM_147179)	-1258.0	NM_001355561	67228.0	Mm.389248	NM_026044	ENSMUSG00000026975	Dph7	2810443J12Rik|AW060693|Wdr85	diphthamine biosynethesis 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5920850-2	chr19	5920750	5920950	+	655.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026772, intron 1 of 1)	intron (NM_026772, intron 1 of 1)	3966.0	NM_026772	104252.0	Mm.491103	NM_026772	ENSMUSG00000045664	Cdc42ep2	1110008C05Rik|Borg1|Cep2|D19Bwg1013e	CDC42 effector protein (Rho GTPase binding) 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-70232112-4	chr12	70232013	70232213	+	938.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045174, exon 2 of 5)	non-coding (NR_045174, exon 2 of 5)	4272.0	NR_045174	414124.0	Mm.416164	NR_045174	ENSMUSG00000085298	F730035M05Rik	-	RIKEN cDNA F730035M05 gene	ncRNA	1.63129481565411	1.32479985513487	1.28807164096331	1.83866937172773	2.24219485289588	2.19894577327574	1.64748965486491	1.04916509626012	1.01017247204228	0.374363137947411	0.86721387654551
Merged-chr5-113007206-1	chr5	113007106	113007306	+	558.0	f0_balb.idr	intron (NM_001285806, intron 1 of 20)	intron (NM_001285806, intron 1 of 20)	8332.0	NM_001285806	320129.0	Mm.285619	NM_177078	ENSMUSG00000042249	Grk3	4833444A01Rik|AI851927|AW551196|Adrbk-2|Adrbk2|Bark-2	G protein-coupled receptor kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-9445504-1	chr19	9445404	9445604	+	1000.0	f0_balb.idr	Intergenic	Intergenic	113744.0	NR_073559	619371.0	Mm.316894	NM_001030317		Stxbp3-ps	Munc18c(L)|Stxbp3-1|Stxbp3b	syntaxin-binding protein 3, pseudogene	pseudo	-1.18832717429738	-1.16380929885254	-0.856565824811958	-1.18328408639367	-1.18787580914644	-1.16149229066421	-0.849604865165746	-1.18171197755832	0.0406512889656815	0.990321405100139	1
Merged-chr3-101800037-4	chr3	101799931	101800131	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36192.0	NM_172295	242125.0	Mm.32900	NM_172295	ENSMUSG00000044313	Mab21l3	-	mab-21-like 3 (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-38091200-1	chr5	38091100	38091300	+	597.0	f0_balb.idr	intron (NM_001359398, intron 1 of 9)	intron (NM_001359398, intron 1 of 9)	51970.0	NM_026959	71116.0	Mm.18959	NM_026959	ENSMUSG00000029125	Stx18	1810035L21Rik|4933425D03Rik|AU041562	syntaxin 18	protein-coding	1.12530582046525	0.944896009571988	0.915347363551079	1.77088697152917	0.858464515948452	0.72274802055827	0.921919013863765	1.62346120157018	-0.595352082266604	0.66638198271661	0.992515300319318
Merged-chr11-64718863-4	chr11	64718756	64718956	+	978.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-260179.0	NM_023479	68626.0	Mm.157711	NM_023479	ENSMUSG00000020549	Elac2	1110017O07Rik|D11Wsu80e|Hpc2	elaC ribonuclease Z 2	protein-coding	2.37964301985525	2.39912050787744	2.69089218931587	3.17259677965196	2.2851184682992	2.41665710906526	1.99614943181252	3.18828473294013	-0.285321988992659	0.715506775022652	0.998431161219273
Merged-chr19-46340982-4	chr19	46340885	46341085	+	916.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1777.0	NR_030468	751550.0		NR_030468	ENSMUSG00000070127	Mir146b	Mirn146b|mir-146b	microRNA 146b	ncRNA	0.0996104118433349	-0.323232106593035	-0.164495653519755	-0.329553681806045	-0.333408958239238	-0.322422644348381	-0.160273051072265	0.0673542947306884	-0.105246983818747	0.964599301262235	1
Merged-chr14-25480337-2	chr14	25480237	25480437	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	21152.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-7217682-4	chr19	7217595	7217795	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007750)	promoter-TSS (NM_007750)	-79.0	NM_007750	12868.0	Mm.14022	NM_007750	ENSMUSG00000035885	Cox8a	COX8L	cytochrome c oxidase subunit VIIIa	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88000583-4	chr3	88000488	88000688	+	868.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001109758)	promoter-TSS (NM_001109758)	-232.0	NM_001109758	12032.0	Mm.4598	NM_007529	ENSMUSG00000004892	Bcan	Cspg7	brevican	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-121466646-4	chr10	121466558	121466758	+	865.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138956, intron 1 of 4)	intron (NM_138956, intron 1 of 4)	9592.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	3.2263369223884	3.05382868533672	3.69402047350982	1.88827374531755	3.25288602240038	3.07678012183816	3.83914383552881	2.98583988374488	0.35197216589583	0.60028797715284	0.972964840983327
Merged-chr14-54230845-4	chr14	54230731	54230931	+	577.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23098.0	NM_001113358	13135.0	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	2.79429603407719	2.90803623169947	3.66344549538221	3.50434201819813	2.00487981079759	3.16437236812109	3.0588764510023	3.45629577788085	-0.418640409095952	0.532085499119411	0.951693771382631
Merged-chr6-31123564-4	chr6	31123478	31123678	+	993.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110471, intron 3 of 3)	intron (NR_110471, intron 3 of 3)	-60485.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-88242703-3	chr6	88242594	88242794	+	866.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20426.0	NM_019964	56691.0	Mm.272871	NM_019964	ENSMUSG00000048206	Dnajb8	1700016F14Rik|1700031F10Rik|AI326313|mDj6	DnaJ heat shock protein family (Hsp40) member B8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-33404982-2	chr2	33404882	33405082	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	26342.0	NM_001085507	241311.0	Mm.296512	NM_001085507	ENSMUSG00000068966	Zbtb34	Gm349|mKIAA1993	zinc finger and BTB domain containing 34	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46850338-3	chr8	46850238	46850438	+	848.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	110593.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16053363-4	chr7	16053256	16053456	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18489.0	NM_001347559	666528.0	Mm.290718	NM_001099277	ENSMUSG00000078796	Zfp541	EG666528|Znf541	zinc finger protein 541	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-126260965-4	chr4	126260852	126261052	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1453.0	NM_013718	27096.0	Mm.8392	NM_013718	ENSMUSG00000028847	Trappc3	1110058K12Rik|AI835942|AU019197|Bet3	trafficking protein particle complex 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-29620761-2	chr2	29620661	29620861	+	599.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_054050, intron 1 of 23)	intron (NM_054050, intron 1 of 23)	1041.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91101577-4	chr2	91101474	91101674	+	994.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011355, intron 2 of 4)	intron (NM_011355, intron 2 of 4)	4896.0	NM_011355	20375.0	Mm.1302	NM_011355	ENSMUSG00000002111	Spi1	Dis-1|Dis1|PU.1|Sfpi-1|Sfpi1|Spi-1|Tcfpu1|Tfpu.1	spleen focus forming virus (SFFV) proviral integration oncogene	protein-coding	-0.433419496605968	0.346328138972417	-0.423626616881733	-0.42729803101504	-0.43250674661367	0.116408396509669	-0.422579234343479	-0.426655786864084	-0.714747771474442	0.789037825580491	1
Merged-chr2-167499255-1	chr2	167499155	167499355	+	552.0	f1_balb.idr	intron (NM_030743, intron 1 of 7)	URR1A|DNA|hAT-Charlie	-4188.0	NR_153838	81018.0	Mm.22225	NM_030743	ENSMUSG00000006418	Rnf114	1110008J21Rik|AI225886|AW549494|Zfp228|Zfp313|Znf228	ring finger protein 114	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-17632002-1	chr14	17631902	17632102	+	610.0	f0_balb.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	-28958.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-110376996-4	chr5	110376911	110377111	+	855.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142642, intron 11 of 18)	intron (NM_001142642, intron 11 of 18)	10116.0	NM_028596	381668.0	Mm.348782	NM_028596	ENSMUSG00000043323	Fbrsl1	2410025L10Rik|AI467568|Gm1049|Gm29766|mKIAA1545	fibrosin-like 1	protein-coding	-1.36015291771705	-1.32842431658676	-1.33874579108173	-1.34722415754512	-1.35969949349639	-1.32618761000664	-1.33640923549635	-0.791042329471244	2.42373733289067	0.484013421080845	1
Merged-chr10-127571285-3	chr10	127571176	127571376	+	792.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 34 of 88)	intron (NM_008512, intron 34 of 88)	-36717.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-37631904-1	chr13	37631804	37632004	+	586.0	f1_c57bl6.idr	Intergenic	LTR40a|LTR|ERVL	-194134.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	1.20038793511443	1.07162595148324	0.896226428384495	0.991318341420141	0.550022982572059	0.940209699429776	0.750481382326778	0.560319950782874	-2.01041369043912	0.200375502582065	1
Merged-chr16-36982574-4	chr16	36982476	36982676	+	852.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358217, intron 1 of 3)	intron (NM_001358217, intron 1 of 3)	-3440.0	NM_001037321	207215.0	Mm.211899	NM_001037321	ENSMUSG00000047746	Fbxo40	9830003A13Rik|mKIAA1195	F-box protein 40	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46648769-4	chr19	46648686	46648886	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177813, intron 2 of 3)	intron (NM_001177813, intron 2 of 3)	24214.0	NM_007809	13074.0	Mm.1262	NM_007809	ENSMUSG00000003555	Cyp17a1	Cyp17|p450c17	cytochrome P450, family 17, subfamily a, polypeptide 1	protein-coding	6.11690145485619	5.90576914385748	6.20158940050521	5.8324564217175	5.94075064890293	6.03834700590924	6.49865850681888	5.62848753706326	0.0382842649087529	0.87732216504447	0.998431161219273
Merged-chr5-113846505-2	chr5	113846405	113846605	+	817.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011779, intron 8 of 10)	intron (NM_011779, intron 8 of 10)	-16004.0	NM_009151	20345.0	Mm.332590	NM_009151	ENSMUSG00000048163	Selplg	CD162|Psgl-1|Psgl1|Selp1|Selpl	selectin, platelet (p-selectin) ligand	protein-coding	2.23867676888733	0.93900807198618	1.1551841260865	1.92690174488229	1.73951152860191	0.943483844307052	0.923289282564269	1.93827000318821	-0.616673703089406	0.644694738941525	0.983701068654072
Merged-chr15-25751740-3	chr15	25751662	25751862	+	945.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019472, intron 19 of 40)	intron (NM_019472, intron 19 of 40)	-1444.0	NM_001353142	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-10985905-1	chr16	10985805	10986005	+	546.0	f1_c57bl6.idr	intron (NM_019980, intron 1 of 3)	intron (NM_019980, intron 1 of 3)	7216.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-104844056-1	chr10	104843956	104844156	+	764.0	f1_balb.idr	Intergenic	Lx|LINE|L1	556787.0	NR_105838	102465222.0		NR_105838	ENSMUSG00000099264	Mir6411	Gm27767|mmu-mir-6411	microRNA 6411	ncRNA	0.843766090940741	0.713305428090077	1.34727563044566	0.691505026556496	1.65438046046874	0.716043350856833	1.47357277649991	1.30973169944718	1.75371427704609	0.242786661372746	0.740205242203169
Merged-chr17-24696104-4	chr17	24695965	24696165	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357836)	promoter-TSS (NM_001357836)	91.0	NM_023040	11692.0	Mm.28124	NM_023040	ENSMUSG00000040888	Gfer	Alr|ERV1	growth factor, augmenter of liver regeneration	protein-coding	0.618060233362575	1.20961418739419	0.82849058602466	0.345943140682116	0.741208830474027	0.36158976349032	0.543840667847345	0.347005013205978	-1.68062319201708	0.338313928441347	1
Merged-chr18-46213320-3	chr18	46213207	46213407	+	678.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178872)	promoter-TSS (NM_178872)	-700.0	NM_178872	28105.0	Mm.277382	NM_178872	ENSMUSG00000033949	Trim36	D18Wsu100e|haprin	tripartite motif-containing 36	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-107639833-4	chr13	107639733	107639933	+	892.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-47564.0	NR_045900	72257.0	Mm.234155	NR_045900	ENSMUSG00000102000	1700006H21Rik	-	RIKEN cDNA 1700006H21 gene	ncRNA	1.93523240803988	2.01498189483179	1.31276731139243	2.57000034755514	1.655572840329	2.45325593528615	2.66679953953522	2.66473952444424	0.875558213358212	0.353473552432005	0.853132398390271
Merged-chr2-14229292-4	chr2	14229153	14229353	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008625)	promoter-TSS (NM_008625)	-161.0	NM_008625	17533.0	Mm.2019	NM_008625	ENSMUSG00000026712	Mrc1	AW259686|CD206|MR	mannose receptor, C type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-86062508-2	chr11	86062408	86062608	+	896.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_178309, intron 19 of 19)	intron (NM_178309, intron 19 of 19)	-38158.0	NR_046030	629393.0	Mm.372867	NR_046030		Gm20759	-	predicted gene, 20759	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-104541464-4	chr3	104541369	104541569	+	874.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29551.0	NM_001310698	269473.0	Mm.34855	NM_001025067	ENSMUSG00000032913	Lrig2	4632419I10Rik|BB096938|LIG-2	leucine-rich repeats and immunoglobulin-like domains 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-47127236-3	chr19	47127137	47127337	+	942.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011053, intron 29 of 35)	intron (NM_011053, intron 29 of 35)	11057.0	NM_133746	72691.0	Mm.31663	NM_133746	ENSMUSG00000033033	Calhm2	2810048G17Rik|Fam26b	calcium homeostasis modulator 2	protein-coding	-2.18308165884198	-2.15547475440471	-2.16382331017202	-2.1706810624505	-2.18114370519566	-2.15366558754311	-2.03057248461154	-2.16945352807143	0.759018020146679	0.829933115115583	1
Merged-chr1-85732855-2	chr1	85732755	85732955	+	915.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177055, intron 1 of 5)	Lx8|LINE|L1	3751.0	NM_177055	319997.0	Mm.116691	NM_177055	ENSMUSG00000052760	A630001G21Rik	-	RIKEN cDNA A630001G21 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100547152-4	chr11	100547052	100547252	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028918, intron 1 of 11)	MIR|SINE|MIR	1520.0	NM_028918	74407.0	Mm.31590	NM_028918	ENSMUSG00000006784	Ttc25	4933404O19Rik	tetratricopeptide repeat domain 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126828272-4	chr8	126828103	126828303	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20817.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	2.25362449576882	2.03073048564437	3.32390028274025	2.49908021207453	2.59082129978475	1.81610380525866	2.70660266282436	3.18903910199652	0.0703013608783108	0.931201989480003	0.998431161219273
Merged-chr15-102966035-2	chr15	102965935	102966135	+	696.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010462)	promoter-TSS (NM_010462)	-761.0	NM_010462	209448.0	Mm.31665	NM_010462	ENSMUSG00000022484	Hoxc10	AI506621|Hox-3.6	homeobox C10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-181484188-2	chr2	181484088	181484288	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9018.0	NM_183181	241850.0	Mm.87455	NM_183181	ENSMUSG00000055882	Abhd16b	1700095H12	abhydrolase domain containing 16B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-60019314-4	chr2	60019211	60019411	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001182, intron 2 of 35)	intron (NM_001001182, intron 2 of 35)	106429.0	NM_001001182	407823.0	Mm.228071	NM_001001182	ENSMUSG00000026987	Baz2b	5830435C13Rik|BC053917|D2Ertd794e	bromodomain adjacent to zinc finger domain, 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-73553620-2	chr5	73553520	73553720	+	788.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001190733, intron 8 of 9)	intron (NM_001190733, intron 8 of 9)	62594.0	NM_178896	100737.0	Mm.220312	NM_178896	ENSMUSG00000051674	Dcun1d4	AI836376	DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	protein-coding	-1.26872622733204	-1.24139049354832	-1.25169651944416	-1.09990844973557	-1.2682932763868	-1.23915713474408	-1.24936346108299	-0.832315581531828	1.28993179094749	0.702842249764848	1
Merged-chr14-40965717-4	chr14	40965646	40965846	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145928, intron 1 of 8)	intron (NM_145928, intron 1 of 8)	1150.0	NM_145928	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91068417-2	chr2	91068317	91068517	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_110981, intron 1 of 7)	intron (NR_110981, intron 1 of 7)	1898.0	NM_026721	68427.0	Mm.192375	NM_026721	ENSMUSG00000002105	Slc39a13	1100001L14Rik|AA387663|ZIP-13|ZIP13	solute carrier family 39 (metal ion transporter), member 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-106157196-2	chr9	106157122	106157322	+	687.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_174846, exon 2 of 4)	exon (NM_174846, exon 2 of 4)	916.0	NM_001039586	235582.0	Mm.335420	NM_174846	ENSMUSG00000020258	Glyctk	6230410P16Rik|C430006L12	glycerate kinase	protein-coding	-0.130350551365798	-0.417857644973165	-0.423197318161278	-0.427347202734449	0.646691829001007	-0.416659974288565	-0.422015859948035	-0.426620298621078	2.3110597806638	0.377477195361251	1
Merged-chr14-30692331-2	chr14	30692231	30692431	+	544.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22518.0	NM_019460	54650.0	Mm.294662	NM_019460	ENSMUSG00000006527	Sfmbt1	4930442N21Rik|9330180L21Rik|AA536974|Sfmbt|Smr	Scm-like with four mbt domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-76098690-4	chr13	76098599	76098799	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029847)	promoter-TSS (NM_029847)	-35.0	NM_001081352	218343.0	Mm.277964	NM_001081352	ENSMUSG00000033991	Ttc37	-	tetratricopeptide repeat domain 37	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153139616-2	chr2	153139516	153139716	+	656.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001172117, intron 10 of 12)	(A)n|Simple_repeat|Simple_repeat	-21685.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-4805645-2	chr9	4805545	4805745	+	737.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-9411.0	NM_019691	14802.0	Mm.209263	NM_019691	ENSMUSG00000025892	Gria4	GluA4|GluR-D|Glur-4|Glur4|Gluralpha4|spkw1	glutamate receptor, ionotropic, AMPA4 (alpha 4)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-54406888-3	chr14	54406768	54406968	+	798.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011405, intron 4 of 11)	intron (NM_011405, intron 4 of 11)	2604.0	NM_001253680	20540.0	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	-0.946189498902753	-0.931575358611085	-0.94076171000006	-0.942807383787865	-0.573918262386353	-0.929017710499158	-0.940175780086088	-0.522856136696833	2.89469829273601	0.348654519402419	1
Merged-chr5-66074658-2	chr5	66074558	66074758	+	825.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_139065, intron 2 of 6)	B3|SINE|B2	23521.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-17728691-1	chr6	17728591	17728791	+	554.0	f0_balb.idr	intron (NM_001289624, intron 1 of 15)	B3A|SINE|B2	-14901.0	NM_001289627	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	-0.432817867942484	-0.418928278786204	-0.423466112919898	-0.426975504318165	0.0734259817763351	0.346578405988449	-0.422464223033329	-0.426361891354681	3.68898536446478	0.157488750188233	1
Merged-chr11-95412716-2	chr11	95412616	95412816	+	830.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1367.0	NM_025287	20747.0	Mm.285454	NM_025287	ENSMUSG00000057522	Spop	AI315626|Pcif1|TEF2	speckle-type POZ protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-73749914-1	chr15	73749814	73750014	+	543.0	f1_balb.idr	intron (NM_008975, intron 1 of 5)	intron (NM_008975, intron 1 of 5)	1888.0	NM_008975	19245.0	Mm.390807	NM_008975	ENSMUSG00000059895	Ptp4a3	AV088979|Prl-3|pPtp4a3	protein tyrosine phosphatase 4a3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95293806-4	chr3	95293714	95293914	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133858, intron 7 of 9)	intron (NM_133858, intron 7 of 9)	10879.0	NM_199475	75007.0	Mm.279287	NM_133858	ENSMUSG00000038712	Mindy1	1810005H09Rik|4930504E06Rik|AA562754|AA960384|AW561904|Fam63a|cI-40|mKIAA1390|ni	MINDY lysine 48 deubiquitinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120598922-3	chr8	120598817	120599017	+	746.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9842.0	NM_178856	272551.0	Mm.275910	NM_178856	ENSMUSG00000031821	Gins2	2210013I18Rik|4833427B12Rik|AI323585|Pfs2	GINS complex subunit 2 (Psf2 homolog)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-6715062-2	chr10	6714954	6715154	+	841.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43539.0	NM_001302794	18390.0	Mm.438000	NM_011013	ENSMUSG00000000766	Oprm1	M-OR-1|MOP-R|MOR-1|MOR-1O|Oprm|mor|muOR	opioid receptor, mu 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-54264753-3	chr11	54264649	54264849	+	717.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010556)	TTS (NM_010556)	2530.0	NM_010556	16187.0	Mm.983	NM_010556	ENSMUSG00000018914	Il3	BPA|Csfmu|HCGF|Il-3|MCGF|PSF	interleukin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-97751229-4	chr4	97751126	97751326	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122952, intron 1 of 10)	intron (NM_001122952, intron 1 of 10)	-26400.0	NM_001122953	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72753782-2	chr6	72753682	72753882	+	546.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001079822, intron 3 of 12)	intron (NM_001079822, intron 3 of 12)	35263.0	NM_001079822	21415.0	Mm.440067	NM_009332	ENSMUSG00000055799	Tcf7l1	Tcf-3|Tcf3|bHLHb21	transcription factor 7 like 1 (T cell specific, HMG box)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-81754851-4	chr12	81754749	81754949	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001174107, intron 2 of 10)	intron (NM_001174107, intron 2 of 10)	26321.0	NM_177395	338372.0	Mm.35284	NM_177395	ENSMUSG00000042724	Map3k9	E130314H24Rik|Mlk1|Prke1	mitogen-activated protein kinase kinase kinase 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-51666865-3	chr12	51666746	51666946	+	846.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001172098, intron 1 of 15)	intron (NM_001172098, intron 1 of 15)	-24120.0	NM_001329699	11782.0	Mm.386749	NM_021710	ENSMUSG00000020955	Ap4s1	AI314282	adaptor-related protein complex AP-4, sigma 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-53188810-4	chr5	53188713	53188913	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172710, intron 2 of 23)	intron (NM_172710, intron 2 of 23)	24639.0	NM_172710	231238.0	Mm.235020	NM_172710	ENSMUSG00000029189	Sel1l3	2310045A20Rik|AI429585|mKIAA0746	sel-1 suppressor of lin-12-like 3 (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-46185313-2	chr9	46185213	46185413	+	977.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027498, intron 6 of 24)	intron (NM_027498, intron 6 of 24)	-43317.0	NM_009692	11806.0	Mm.26743	NM_009692	ENSMUSG00000032083	Apoa1	Alp-1|Apoa-1|Brp-14|Ltw-1|Lvtw-1|Sep-1|Sep-2|Sep2|apo-AI|apoA-I	apolipoprotein A-I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-60238843-2	chr18	60238743	60238943	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033767, intron 2 of 2)	intron (NM_001033767, intron 2 of 2)	26766.0	NM_001033767	240327.0	Mm.357104	NM_001033767	ENSMUSG00000073555	Gm4951	EG240327|Ifgga2	predicted gene 4951	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-66857193-4	chr4	66857086	66857286	+	993.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29635.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45124455-4	chr7	45124293	45124493	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013725)	promoter-TSS (NM_013725)	-4.0	NM_013725	27207.0	Mm.196538	NM_013725	ENSMUSG00000003429	Rps11	-	ribosomal protein S11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45590604-2	chr7	45590504	45590704	+	624.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_009737)	TTS (NM_009737)	-15428.0	NR_038165	71661.0	Mm.439894	NR_038165	ENSMUSG00000109644	0610005C13Rik	AI182092	RIKEN cDNA 0610005C13 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-120576277-4	chr2	120576199	120576399	+	934.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009222, intron 1 of 7)	Tigger7|DNA|TcMar-Tigger	8628.0	NM_009222	20619.0	Mm.245715	NM_009222	ENSMUSG00000027287	Snap23	23kDa|AA408749|SNAP-23|Sndt|Syndet	synaptosomal-associated protein 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-55436785-1	chr1	55436685	55436885	+	561.5	f0_balb.idr	intron (NM_001114663, intron 1 of 5)	intron (NM_001114663, intron 1 of 5)	30839.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-23807108-2	chr18	23807008	23807208	+	814.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_153058, intron 1 of 6)	intron (NM_153058, intron 1 of 6)	3138.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36709299-6	chr1	36709234	36709434	+	945.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146107, intron 1 of 10)	LFSINE_Vert|SINE|tRNA	591.0	NM_146107	226977.0	Mm.28521	NM_146107	ENSMUSG00000037351	Actr1b	2310066K23Rik|AA960180|AI851923|Arp1b	ARP1 actin-related protein 1B, centractin beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-43397615-4	chr7	43397539	43397739	+	826.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10641.0	NM_172900	243958.0	Mm.24444	NM_172900	ENSMUSG00000030468	Siglecg	9830164H23|A630096C01Rik|Siglec-G|Siglec10|mSiglec-G	sialic acid binding Ig-like lectin G	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-98313749-2	chr13	98313649	98313849	+	905.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001170540, exon 3 of 6)	exon (NM_001170540, exon 3 of 6)	3218.0	NM_145455	218490.0	Mm.371688	NM_145455	ENSMUSG00000021660	Btf3	1700054E11Rik	basic transcription factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-11491432-2	chr8	11491332	11491532	+	712.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17B|LTR|ERVK	-6074.0	NM_001190357	69225.0	Mm.64911	NM_026995	ENSMUSG00000031505	Naxd	0710008K08Rik|2810407E01Rik|Carkd	NAD(P)HX dehydratase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-133113729-2	chr2	133113629	133113829	+	954.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-167693.0	NM_198029	241639.0	Mm.209784	NM_198029	ENSMUSG00000027356	Fermt1	5830467P10Rik|Kindlin-1	fermitin family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-14174352-4	chr10	14174253	14174453	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	207974.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-64182289-2	chr17	64182189	64182389	+	698.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR17B_Mm|LTR|ERVK	-131617.0	NR_130982	68771.0	Mm.443351	NR_130982		1110058D11Rik	-	RIKEN cDNA 1110058D11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-123949635-4	chr9	123949551	123949751	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB3|LINE|L1	19041.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-103955675-1	chr13	103955575	103955775	+	598.0	f0_balb.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-35089.0	NM_001005868	59079.0	Mm.277354	NM_021563	ENSMUSG00000021709	Erbin	1700028E05Rik|Erbb2ip|mKIAA1225	Erbb2 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-3918170-4	chr13	3918065	3918265	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019671)	promoter-TSS (NM_019671)	55.0	NM_019671	56349.0	Mm.22261	NM_019671	ENSMUSG00000021215	Net1	Net1a|mNET1	neuroepithelial cell transforming gene 1	protein-coding	4.10228229372369	3.69129672653538	4.36948724293497	3.85389513795524	4.1340183772244	3.89414563452834	4.58327245169032	4.00199844569598	0.205089084421245	0.641631550603817	0.982599433509505
Merged-chr2-103059419-3	chr2	103059326	103059526	+	604.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175094, intron 1 of 10)	intron (NM_175094, intron 1 of 10)	14087.0	NM_175094	27402.0	Mm.315011	NM_175094	ENSMUSG00000010914	Pdhx	AI481367|E3bp|Pdx1	pyruvate dehydrogenase complex, component X	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-26441717-4	chr4	26441593	26441793	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-95041.0	NM_172865	242362.0	Mm.245602	NM_172865	ENSMUSG00000040520	Manea	4932703L02Rik	mannosidase, endo-alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119666644-2	chr11	119666544	119666744	+	561.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028898, intron 2 of 33)	RMER15|LTR|ERVL	63739.0	NM_028898	74370.0	Mm.209933	NM_028898	ENSMUSG00000025583	Rptor	4932417H02Rik|Rap|Raptor|mKIAA1303	regulatory associated protein of MTOR, complex 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36713554-4	chr18	36713454	36713654	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13261.0	NM_009841	12475.0	Mm.3460	NM_009841	ENSMUSG00000051439	Cd14	-	CD14 antigen	protein-coding	3.81708905831986	3.9051750872747	4.95946857613648	4.96645935051943	3.84912907784535	3.53788686979077	4.23073300698402	4.82638844065117	-0.411379743529143	0.389337393700605	0.878578793881975
Merged-chr11-19927376-2	chr11	19927265	19927465	+	666.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_033523, intron 1 of 5)	intron (NM_033523, intron 1 of 5)	2923.0	NM_033523	114716.0	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-89337988-4	chr7	89337883	89338083	+	969.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360746, intron 2 of 14)	intron (NM_001360746, intron 2 of 14)	804.0	NM_028343	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76625670-3	chr15	76625574	76625774	+	765.888916	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	TTS (NM_183091)	TTS (NM_183091)	410.0	NM_025842	66914.0	Mm.30028	NM_025842	ENSMUSG00000115987	Vps28	1110014J03Rik|CIIA|D730005C08Rik	vacuolar protein sorting 28	protein-coding	2.55645870722538	4.1440397429452	4.26355212722004	3.27897135204308	2.83085688924895	3.31588295896085	3.98670999165644	3.29635422963761	-0.449943537607393	0.463299394463664	0.921937107713684
Merged-chr10-8881299-6	chr10	8881166	8881366	+	935.5277710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 1 of 19)	intron (NM_175155, intron 1 of 19)	4804.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135776780-2	chr5	135776680	135776880	+	565.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029659, intron 1 of 8)	intron (NM_029659, intron 1 of 8)	1521.0	NM_001289554	76571.0	Mm.247666	NM_029659	ENSMUSG00000019178	Styxl1	1700011C14Rik|Dusp24|Mkstyx	serine/threonine/tyrosine interacting-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131436665-3	chr1	131436494	131436694	+	780.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081011, intron 3 of 22)	intron (NM_001081011, intron 3 of 22)	90767.0	NM_001081011	14270.0	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-75746915-2	chr15	75746815	75747015	+	707.166687	f1_balb.idr|f1_c57bl6.idr	TTS (NM_194350)	TTS (NM_194350)	1007.0	NM_194350	378435.0	Mm.309589	NM_194350	ENSMUSG00000047591	Mafa	RIPE3b1	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein A (avian)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-84645608-3	chr2	84645512	84645712	+	870.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007615, intron 1 of 19)	AT_rich|Low_complexity|Low_complexity	3868.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-40649163-1	chr19	40649063	40649263	+	590.0	f1_balb.idr	intron (NM_001304721, intron 1 of 9)	intron (NM_001304721, intron 1 of 9)	-10607.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	2.39491157100347	2.12444480308147	2.82224961468959	1.2881543269188	2.51841932625301	3.54774623300442	3.17539027816076	1.29492877474163	1.1451632924949	0.228627611535315	0.721861600842291
Merged-chr15-6534070-3	chr15	6533961	6534161	+	954.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45786.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-21370550-4	chr17	21370455	21370655	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MMERVK9C_I-int|LTR|ERVK	-13193.0	NM_172486	210503.0	Mm.33443	NM_172486	ENSMUSG00000062743	Zfp677	A830058L05Rik|Tce8	zinc finger protein 677	protein-coding	3.97487419826069	3.2758069418101	3.4476785801247	3.88182767425456	2.82751019019176	3.30025382621376	2.66524676120029	3.90039427826055	-0.637023424849534	0.273925184779098	0.777944066667103
Merged-chr3-81113082-4	chr3	81112940	81113140	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019971, intron 1 of 5)	B4A|SINE|B4	76624.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	3.58788124809534	4.10265075675423	4.80984709859665	4.76174230431708	3.99067757892991	3.50521449828532	4.55877500619349	3.56402593014081	-0.566760220592608	0.24007577125605	0.736557049999171
Merged-chr7-116033119-2	chr7	116033019	116033219	+	711.833374	f1_balb.idr|f1_c57bl6.idr	TTS (NR_152104)	TTS (NR_152104)	1140.0	NR_152104	68469.0	Mm.435492	NR_152104		Sox6os	1110006G14Rik	SRY (sex determining region Y)-box 6, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-37042916-2	chr11	37042816	37043016	+	670.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-98675.0	NM_011856	23964.0	Mm.439889	NM_011856	ENSMUSG00000049336	Tenm2	Odz2|Odz3|Ten-2|Ten-m2	teneurin transmembrane protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-97696629-4	chr7	97696535	97696735	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023671)	promoter-TSS (NM_023671)	-14.0	NR_154551	102641859.0	Mm.211743	NR_154551		Rsf1os2	Gm15623	remodeling and spacing factor 1, opposite strand 2	ncRNA	2.61213735600554	3.30905464733508	3.80702127063467	4.1872766415051	3.21610974927916	1.74123219225018	3.22050483159962	3.66175029782461	-0.730350449672971	0.289660402491865	0.7950309994885
Merged-chr8-125460029-2	chr8	125459903	125460103	+	937.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357372, intron 10 of 21)	intron (NM_001357372, intron 10 of 21)	32830.0	NM_001081337	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	2.69361287175279	1.07632412113524	1.83545418506629	1.52571320053986	1.30474378220895	0.801406813911646	0.778300520436695	0.757795855012629	-3.44112397653279	0.0140977760664378	0.138964277090121
Merged-chr18-34469080-2	chr18	34468980	34469180	+	590.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146084, intron 8 of 20)	intron (NM_146084, intron 8 of 20)	37743.0	NM_146084	225358.0	Mm.226899	NM_146084	ENSMUSG00000036501	Fam13b	2610024E20Rik|AW060714|AW546153	family with sequence similarity 13, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-79392807-4	chr8	79392718	79392918	+	818.733337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008539, intron 1 of 6)	intron (NM_008539, intron 1 of 6)	6650.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-50681920-3	chr6	50681815	50682015	+	612.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27522.0	NM_021892	60531.0	Mm.157158	NM_021892	ENSMUSG00000029831	Npvf	Rfrp	neuropeptide VF precursor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-95826541-2	chr11	95826441	95826641	+	825.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153104, intron 1 of 2)	ID_B1|SINE|B4	2041.0	NM_153104	237928.0	Mm.133075	NM_153104	ENSMUSG00000050860	Phospho1	D11Moh36|Phospo1	phosphatase, orphan 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4727077-2	chr16	4726977	4727177	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001136066, intron 1 of 5)	intron (NM_001136066, intron 1 of 5)	716.0	NM_001136066	15369.0	Mm.272866	NM_010443	ENSMUSG00000004070	Hmox2	HO-2|HO2	heme oxygenase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69394357-1	chr11	69394257	69394457	+	549.0	f1_balb.idr	intron (NM_001045525, intron 3 of 3)	intron (NM_001045525, intron 3 of 3)	989.0	NM_001045525	327951.0	Mm.415669	NM_001045525	ENSMUSG00000044795	Cyb5d1	Gm740	cytochrome b5 domain containing 1	protein-coding	0.218884438611972	0.0869202329797611	0.080472010616906	0.824554374031991	0.223415841923042	0.0883699486403138	0.0818966314914329	0.833396646216094	0.0302683508441657	0.988157410043917	1
Merged-chr14-25515121-2	chr14	25515021	25515221	+	702.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 2 of 23)	intron (NM_183208, intron 2 of 23)	-19318.0	NR_037236	100526533.0		NR_037236	ENSMUSG00000093081	Mir3075	mir-3075|mmu-mir-3075	microRNA 3075	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-75877403-4	chr16	75877306	75877506	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023380, intron 4 of 7)	intron (NM_023380, intron 4 of 7)	31860.0	NM_023380	67742.0	Mm.131406	NM_023380	ENSMUSG00000022876	Samsn1	4930571B16Rik|930571B16Rik|Hacs1|SLy2	SAM domain, SH3 domain and nuclear localization signals, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-98120462-4	chr7	98120359	98120559	+	972.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001256081)	promoter-TSS (NM_001256081)	-966.0	NM_008663	17921.0	Mm.1403	NM_008663	ENSMUSG00000030761	Myo7a	Hdb|Myo7|USH1B|nmf371|polka|sh-1|sh1	myosin VIIA	protein-coding	2.74871791829116	3.3860206241544	1.96768366739029	3.05100306793836	2.3966556099547	2.41466665029736	1.76050700621955	2.8260838898531	-0.943104798958198	0.235949155122201	0.732629278941764
Merged-chr6-87452142-3	chr6	87452041	87452241	+	731.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23147.0	NM_009756	12154.0	Mm.483321	NM_009756	ENSMUSG00000030046	Bmp10	b2b2711Clo	bone morphogenetic protein 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-112003596-2	chr10	112003496	112003696	+	693.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-6332.0	NM_028608	73690.0	Mm.173790	NM_028608	ENSMUSG00000056888	Glipr1	2410114O14Rik|RTVP-1|RTVP1|mRTVP-1	GLI pathogenesis-related 1 (glioma)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-109863606-4	chr8	109863515	109863715	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009677, exon 24 of 24)	3' UTR (NM_009677, exon 24 of 24)	-4988.0	NM_001122594	244650.0	Mm.23494	NM_001122594	ENSMUSG00000031732	Phlpp2	AI481772|C130044A18Rik|Phlppl	PH domain and leucine rich repeat protein phosphatase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-73148183-2	chr14	73148083	73148283	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_033185, intron 1 of 15)	intron (NR_033185, intron 1 of 15)	5398.0	NR_033185	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-142909297-4	chr5	142909210	142909410	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2556.0	NM_007393	11461.0	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-44414055-1	chr11	44413955	44414155	+	587.0	f1_balb.idr	3' UTR (NM_001303244, exon 8 of 8)	3' UTR (NM_001303244, exon 8 of 8)	13992.0	NM_001303244	16160.0	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	-1.5061220274826	-1.47360709383584	-1.48343987814663	-1.49151681994238	-1.50383953926072	-1.47147628845725	-1.0170701920923	-1.49007105122263	2.15652851593596	0.535359572134045	1
Merged-chr8-124896922-4	chr8	124896835	124897035	+	926.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001111141)	promoter-TSS (NM_001111141)	770.0	NM_198103	102058.0	Mm.347360	NM_198103	ENSMUSG00000074030	Exoc8	AI414418|EXO84|Exo84p|R74783|SEC84	exocyst complex component 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122496508-2	chr8	122496408	122496608	+	548.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001357349, exon 19 of 51)	exon (NM_001357349, exon 19 of 51)	20365.0	NR_152823	66965.0	Mm.482288	NM_153775	ENSMUSG00000049482	Ctu2	2310061F22Rik|C16orf84|Ncs2	cytosolic thiouridylase subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-76993472-2	chr11	76993372	76993572	+	567.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5125.0	NM_010484	15567.0	Mm.300318	NM_010484	ENSMUSG00000020838	Slc6a4	5-HTT|AI323329|Htt|Sert	solute carrier family 6 (neurotransmitter transporter, serotonin), member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-115313947-2	chr10	115313847	115314047	+	894.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_024454, intron 1 of 6)	intron (NM_024454, intron 1 of 6)	1644.0	NM_024454	216344.0	Mm.21936	NM_024454	ENSMUSG00000020132	Rab21	9630024B22	RAB21, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-74535788-2	chr15	74535688	74535888	+	969.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359759, intron 2 of 30)	intron (NM_001359759, intron 2 of 30)	19592.0	NM_001359759	107831.0	Mm.43133	NM_174991	ENSMUSG00000034730	Adgrb1	B830018M07Rik|Bai1|R75078|mKIAA4089	adhesion G protein-coupled receptor B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-10182229-4	chr18	10182110	10182310	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009071)	promoter-TSS (NM_009071)	-418.0	NM_009071	19877.0	Mm.6710	NM_009071	ENSMUSG00000024290	Rock1	1110055K06Rik|Rock-I	Rho-associated coiled-coil containing protein kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-95767989-2	chr15	95767889	95768089	+	565.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16398.0	NR_131148	629300.0	Mm.247258	NR_131148	ENSMUSG00000115699	Gm6961	EG629300	predicted gene 6961	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-57524624-3	chr9	57524528	57524728	+	806.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007747, intron 1 of 4)	intron (NM_007747, intron 1 of 4)	3396.0	NM_007747	12858.0	Mm.273403	NM_007747	ENSMUSG00000000088	Cox5a	AA959768|CcOX	cytochrome c oxidase subunit Va	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-123264306-2	chr6	123264234	123264434	+	621.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163161, intron 1 of 5)	intron (NM_001163161, intron 1 of 5)	2227.0	NM_010819	17474.0	Mm.441101	NM_010819	ENSMUSG00000030144	Clec4d	Clecsf8|Mpcl|mcl	C-type lectin domain family 4, member d	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-8994451-2	chr3	8994351	8994551	+	707.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	9753.0	NM_001357073	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-144244886-2	chr2	144244786	144244986	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	21316.0	NR_030762	100313519.0	Mm.453538	NR_030762	ENSMUSG00000077714	Snord17	MBI-43	small nucleolar RNA, C/D box 17	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-15560102-2	chr17	15559996	15560196	+	572.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144809, intron 3 of 9)	B2_Mm1t|SINE|B2	3227.0	NM_144809	213389.0	Mm.215162	NM_144809	ENSMUSG00000051977	Prdm9	BC012016|Dsbc1|G1-419-29|Meisetz|PRDM9-B|Rcr1|repro7	PR domain containing 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45923083-4	chr7	45922987	45923187	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1661.0	NM_010129	13732.0	Mm.20829	NM_010129	ENSMUSG00000040212	Emp3	H-4|H4|HNMP-1|MI-35|Ymp	epithelial membrane protein 3	protein-coding	5.71427353536643	5.65790809065674	6.14832838065807	5.8012042622161	5.48825303547585	5.53979576213433	5.69557931779056	5.54891463753896	-0.308301969280122	0.22055032741037	0.711835678575402
Merged-chr13-60666084-3	chr13	60665994	60666194	+	803.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	63883.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95978601-2	chr3	95978501	95978701	+	773.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6909.0	NR_045872	668224.0	Mm.357766	NR_045872		Gm9054	EG668224	predicted gene 9054	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-31765692-3	chr2	31765598	31765798	+	743.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001283045, intron 1 of 10)	intron (NM_001283045, intron 1 of 10)	5525.0	NM_001283045	11350.0	Mm.1318	NM_009594	ENSMUSG00000026842	Abl1	AI325092|Abl|E430008G22Rik|c-Abl	c-abl oncogene 1, non-receptor tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-86660750-4	chr6	86660640	86660840	+	980.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010751, intron 3 of 5)	intron (NM_010751, intron 3 of 5)	8419.0	NM_010751	17119.0	Mm.279580	NM_010751	ENSMUSG00000001156	Mxd1	AW122478|Mad|Mad1	MAX dimerization protein 1	protein-coding	3.56370918379794	3.20772617902479	2.25810481300439	3.17209465466839	3.0374724821702	2.15740273910345	2.27619546504039	2.74436095260153	-0.955388406670232	0.186282790197321	0.663210954536338
Merged-chr9-100400559-4	chr9	100400473	100400673	+	975.68335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	85900.0	NM_001033543	213208.0	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	5.42368231829185	4.69609163908859	5.09796178189884	5.43338097259171	4.81406843432989	4.72849053465973	4.52687411576757	4.39295840348311	-0.69325176963959	0.0398282152641505	0.284101621129178
Merged-chr7-92874393-6	chr7	92874222	92874422	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028243)	promoter-TSS (NM_028243)	-75.0	NM_001080995	74041.0	Mm.26468	NM_028729	ENSMUSG00000030641	Ddias	4632434I11Rik|noxin	DNA damage-induced apoptosis suppressor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-68257629-2	chr15	68257529	68257729	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_152182, intron 1 of 13)	intron (NR_152182, intron 1 of 13)	1227.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167698118-4	chr2	167698002	167698202	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_110334)	TTS (NR_110334)	6925.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-41467316-4	chr13	41467214	41467414	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111324, intron 1 of 7)	intron (NM_001111324, intron 1 of 7)	20046.0	NM_001111324	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-32304270-3	chr19	32304194	32304394	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 2 of 9)	intron (NM_144792, intron 2 of 9)	45022.0	NM_001168525	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-25598948-4	chr8	25598830	25599030	+	891.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1443.0	NM_173012	270035.0	Mm.268349	NM_173012	ENSMUSG00000037363	Letm2	6030453H13|D030041N04Rik	leucine zipper-EF-hand containing transmembrane protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-100288636-3	chr6	100288596	100288796	+	882.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1338.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-84871929-2	chr11	84871829	84872029	+	727.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_131201)	TTS (NR_131201)	1006.0	NR_131197	102635561.0	Mm.341797	NR_131197		Ggnbp2os	-	gametogenetin binding protein 2, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-89356573-4	chr15	89356470	89356670	+	984.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178919)	promoter-TSS (NM_178919)	851.0	NM_001271601	52683.0	Mm.143167	NM_001115132	ENSMUSG00000008690	Ncaph2	-	non-SMC condensin II complex, subunit H2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16048919-3	chr7	16048839	16049039	+	871.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22906.0	NM_001347559	666528.0	Mm.290718	NM_001099277	ENSMUSG00000078796	Zfp541	EG666528|Znf541	zinc finger protein 541	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-166793280-3	chr1	166793178	166793378	+	577.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-111433.0	NM_001347135	240894.0	Mm.246610	NM_172844	ENSMUSG00000026560	Fmo9	4831428F09Rik	flavin containing monooxygenase 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-125439004-2	chr1	125438904	125439104	+	674.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3277.0	NM_001205385	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-54679360-3	chr6	54679243	54679443	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19C|LTR|ERVK	-2281.0	NM_001289741	68235.0	Mm.233860	NM_026629	ENSMUSG00000038065	Mturn	2410066E13Rik|AI448550|B230212L03Rik	maturin, neural progenitor differentiation regulator homolog (Xenopus)	protein-coding	2.42739189570498	1.8903743231945	3.43338461700108	2.93839917068098	6.16457424886308	5.74494459443968	6.03807544080407	5.72573539551105	4.02036183146989	1.06230116809255e-19	1.06212411789786e-16
Merged-chr11-50285987-2	chr11	50285887	50286087	+	796.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175334, intron 1 of 4)	intron (NM_175334, intron 1 of 4)	6349.0	NM_175334	103806.0	Mm.51116	NM_175334	ENSMUSG00000050567	Maml1	AI644666|AW743257|D930008C07Rik|Mam-1|Mam1|mKIAA0200	mastermind like transcriptional coactivator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-47439560-3	chr11	47439438	47439638	+	758.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60236.0	NM_011891	24052.0	Mm.338890	NM_011891	ENSMUSG00000020354	Sgcd	35kDa|delta-SG	sarcoglycan, delta (dystrophin-associated glycoprotein)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3902625-2	chr19	3902584	3902784	+	716.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_016921, exon 8 of 20)	exon (NM_016921, exon 8 of 20)	2546.0	NM_016921	27060.0	Mm.271689	NM_016921	ENSMUSG00000001750	Tcirg1	ATP6N1C|ATP6a3|Atp6i|OC-116|OPTB1|Stv1|TIRC7|Vph1|oc	T cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 protein A3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-99184121-2	chr9	99184021	99184221	+	682.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-43910.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-83079826-2	chr3	83079726	83079926	+	909.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER45B|DNA|hAT-Tip100	24288.0	NM_016784	53317.0	Mm.286349	NM_016784	ENSMUSG00000027998	Plrg1	AA958940|C80566|Tango4	pleiotropic regulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-95355385-4	chr1	95355279	95355479	+	795.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	41751.0	NM_026321	67698.0	Mm.272705	NM_026321	ENSMUSG00000051185	Fam174a	2310044D20Rik|Fam174|Naa6|Tmem157	family with sequence similarity 174, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-114954697-4	chr13	114954608	114954808	+	868.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22608.0	NM_008396	16398.0	Mm.5007	NM_008396	ENSMUSG00000015533	Itga2	CD49B|DX5|GPIa	integrin alpha 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114725197-4	chr11	114725082	114725282	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2230.0	NM_001034878	432611.0	Mm.212764	NM_001034878	ENSMUSG00000034706	Dnaic2	C030015H18Rik|Dnai2|Gm728|b2b3405Clo	dynein, axonemal, intermediate chain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-47175019-4	chr6	47174960	47175160	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004357, intron 20 of 23)	intron (NM_001004357, intron 20 of 23)	-69336.0	NM_025771	66797.0	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117433271-2	chr8	117433171	117433371	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028941, intron 9 of 20)	intron (NM_028941, intron 9 of 20)	-19752.0	NR_106045	102466801.0		NR_106045	ENSMUSG00000099062	Mir7077	Gm27774|mmu-mir-7077	microRNA 7077	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-109082454-4	chr9	109082342	109082542	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025689)	promoter-TSS (NM_025689)	-54.0	NM_025689	66658.0	Mm.128227	NM_025689	ENSMUSG00000025645	Ccdc51	5730568A12Rik|AI551049	coiled-coil domain containing 51	protein-coding	3.53574467752387	3.88333112150907	4.05409747438598	3.7814777517376	2.57913432144012	2.3746174690281	3.78642587092433	3.45743475421921	-0.974224253952066	0.0943958414023551	0.475550312581511
Merged-chr4-45517225-1	chr4	45517125	45517325	+	557.0	f1_balb.idr	intron (NM_001033306, intron 1 of 5)	intron (NM_001033306, intron 1 of 5)	13603.0	NM_001033306	230126.0	Mm.251716	NM_001033306	ENSMUSG00000044813	Shb	BC028832	src homology 2 domain-containing transforming protein B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120452289-2	chr11	120452189	120452389	+	843.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_126089, intron 1 of 3)	intron (NR_126089, intron 1 of 3)	1211.0	NR_126089	18588.0	Mm.39200	NM_012065	ENSMUSG00000025386	Pde6g	Pdeg|p3AT	phosphodiesterase 6G, cGMP-specific, rod, gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70778205-4	chr14	70778064	70778264	+	974.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010071, exon 5 of 5)	3' UTR (NM_010071, exon 5 of 5)	3783.0	NM_010071	13449.0	Mm.243323	NM_010071	ENSMUSG00000022102	Dok2	DokR|Frip|dok-R	docking protein 2	protein-coding	1.87994684982616	3.24407317789062	3.44538378276808	1.49193496388277	3.6404827324055	3.17288465334083	2.8541998829135	3.05983885336739	0.748091711027111	0.343795766275972	0.844681557087873
Merged-chr10-20772243-4	chr10	20772109	20772309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47131.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	0.956244959444929	0.013398193181153	0.00566106475797296	-0.000375162957953035	0.972814852667944	0.0151292145545099	0.00737580194872606	0.000683669953711025	0.0420561319514604	0.985393473989274	1
Merged-chr9-26783631-3	chr9	26783526	26783726	+	963.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153803, intron 6 of 19)	Lx8|LINE|L1	22842.0	NM_001310768	244757.0	Mm.293696	NM_153803	ENSMUSG00000036395	Glb1l2	-	galactosidase, beta 1-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-46520693-2	chr18	46520593	46520793	+	760.6999509999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_173423, intron 2 of 2)	Lx6|LINE|L1	5278.0	NM_173423	240263.0	Mm.38249	NM_173423	ENSMUSG00000033319	Fem1c	2610312A07Rik|3632443A22Rik|AI646567	fem-1 homolog c (C.elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119393443-1	chr11	119393343	119393543	+	763.0	f0_balb.idr	Intergenic	Intergenic	2971.0	NR_035453	100316690.0		NR_035453	ENSMUSG00000088015	Mir1932	mir-1932|mmu-mir-1932	microRNA 1932	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115613473-4	chr11	115613425	115613625	+	947.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001243584)	promoter-TSS (NM_001243584)	-556.0	NM_001243587	69674.0	Mm.390387	NM_027162	ENSMUSG00000020743	Mif4gd	1110014L05Rik|2310075G12Rik	MIF4G domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-134227994-8	chr5	134227890	134228090	+	930.5520630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010876, intron 2 of 10)	B1F1|SINE|Alu	1635.0	NM_001286037	17969.0	Mm.425296	NM_010876	ENSMUSG00000015950	Ncf1	NCF-47K|NOXO2|Ncf-1|p47-phox|p47<phox>|p47phox	neutrophil cytosolic factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-80772696-3	chr1	80772598	80772798	+	848.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F2|LTR|ERVL-MaLR	-14145.0	NM_175291	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-136056192-4	chr4	136056085	136056285	+	835.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MurERV4-int|LTR|ERVK	-2814.0	NM_025919	67025.0	Mm.276856	NM_025919	ENSMUSG00000059291	Rpl11	2010203J19Rik	ribosomal protein L11	protein-coding	2.62816362453446	1.37311602290097	1.06428317687556	2.58955450421412	2.24762794701881	1.10010893534307	1.070876891915	2.28438077558521	-0.684642329277205	0.576429744936156	0.965286201225318
Merged-chr3-144048053-4	chr3	144047941	144048141	+	953.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	154291.0	NM_001161770	16911.0	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-3863944-4	chr11	3863833	3864033	+	998.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_152818)	promoter-TSS (NM_152818)	-30.0	NM_152818	74309.0	Mm.61022	NM_152818	ENSMUSG00000020435	Osbp2	1700095P05Rik|C630001G20Rik|Gm244|ORP-4|OSBPL1	oxysterol binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-112656342-1	chr12	112656242	112656442	+	550.0	f1_c57bl6.idr	intron (NM_001331107, intron 12 of 13)	intron (NM_001331107, intron 12 of 13)	3009.0	NR_105904	102465566.0		NR_105904	ENSMUSG00000098380	Mir6939	Gm27498|mmu-mir-6939	microRNA 6939	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-96285140-2	chr15	96285040	96285240	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2382.0	NM_175251	77044.0	Mm.17166	NM_175251	ENSMUSG00000033237	Arid2	1700124K17Rik|4432409D24Rik|BAF200|zipzap/p200	AT rich interactive domain 2 (ARID, RFX-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-71814199-4	chr2	71814091	71814291	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008397, intron 1 of 25)	intron (NM_008397, intron 1 of 25)	27252.0	NM_001277970	16403.0	Mm.225096	NM_008397	ENSMUSG00000027111	Itga6	5033401O05Rik|AI115430|Cd49f|VLA-6	integrin alpha 6	protein-coding	4.51336485715334	4.66747982692147	4.27693041953042	4.21664490464159	3.81839378561514	3.98116777879767	4.51178775040012	2.888800021645	-0.686187483762883	0.140831776065265	0.585503385997659
Merged-chr17-53566911-4	chr17	53566811	53567011	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020005)	promoter-TSS (NM_020005)	-60.0	NM_020005	18519.0	Mm.255025	NM_020005	ENSMUSG00000000708	Kat2b	A930006P13Rik|AI461839|AW536563|Pcaf|p/CAF	K(lysine) acetyltransferase 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-132266333-4	chr2	132266243	132266443	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291040, intron 1 of 3)	intron (NM_001291040, intron 1 of 3)	3195.0	NM_138651	110911.0	Mm.284503	NM_138651	ENSMUSG00000058793	Cds2	5730450N06Rik|5730460C18Rik|AI854580|D2Wsu127e	CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-10037421-2	chr1	10037339	10037539	+	914.125	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026493)	promoter-TSS (NM_026493)	720.0	NR_102282	26754.0	Mm.402384	NM_013715	ENSMUSG00000025917	Cops5	AI303502|CSN5|Jab1|Mov34|Sgn5	COP9 signalosome subunit 5	protein-coding	-1.58994551673671	-1.55912852307891	-1.56844783632235	-1.57610299769523	-1.18549093183599	-1.55710898902261	-1.56633814807757	-1.57473272746952	1.78703309985663	0.610309988231842	1
Merged-chr7-145284015-4	chr7	145283928	145284128	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_132642)	promoter-TSS (NR_132642)	-17.0	NR_132642	233979.0	Mm.102235	NM_146206	ENSMUSG00000048677	Tpcn2	D830047E22Rik|Gm35086	two pore segment channel 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-102795930-4	chr14	102795826	102796026	+	939.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	186706.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-60912030-4	chr14	60911935	60912135	+	835.575012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	125952.0	NM_001164155	29820.0	Mm.281356	NM_013869	ENSMUSG00000060548	Tnfrsf19	AL023044|AW123854|TAJ|TAJ-ALPHA|TRADE|Troy	tumor necrosis factor receptor superfamily, member 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-90878261-2	chr8	90878161	90878361	+	860.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177224, intron 2 of 39)	(TAAA)n|Simple_repeat|Simple_repeat	49426.0	NM_177224	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-35379718-2	chr7	35379618	35379818	+	887.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027897, intron 10 of 14)	(CGGGG)n|Simple_repeat|Simple_repeat	17049.0	NM_178643	101831.0	Mm.389855	NM_178643	ENSMUSG00000030493	Faap24	AW124591|AW538696|C230052I12Rik	Fanconi anemia core complex associated protein 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83832584-2	chr11	83832516	83832716	+	794.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18253.0	NM_001291268	21410.0	Mm.7226	NM_009330	ENSMUSG00000020679	Hnf1b	HNF-1-beta|HNF-1B|HNF-1Beta|Hnf1beta|LFB3|Tcf-2|Tcf2|vHNF1	HNF1 homeobox B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-121841663-4	chr3	121841539	121841739	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26337.0	NM_008991	19299.0	Mm.399042	NM_008991	ENSMUSG00000028127	Abcd3	AI313901|AU018866|AW146054|PMP68|PMP70|Pxmp1	ATP-binding cassette, sub-family D (ALD), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-183668041-3	chr1	183667955	183668155	+	746.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-80922.0	NR_151520	102637191.0	Mm.417076	NR_151520	ENSMUSG00000103305	Gm34068	-	predicted gene, 34068	ncRNA	1.04550817385643	0.69668592698491	0.32560709558742	0.319931973975289	0.808689251729623	0.847610411030258	0.327226169699314	0.320924719209955	-0.20915253307766	0.911696148438269	1
Merged-chr11-79030785-3	chr11	79030686	79030886	+	807.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045873, intron 4 of 5)	intron (NR_045873, intron 4 of 5)	7189.0	NR_045873	790910.0	Mm.440410	NR_045873		Gm11201	-	predicted gene 11201	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153240287-2	chr2	153240187	153240387	+	971.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_018807, intron 1 of 2)	intron (NM_018807, intron 1 of 2)	1071.0	NM_018807	54711.0	Mm.103199	NM_018807	ENSMUSG00000051413	Plagl2	AU018672|AW552839|mKIAA0198	pleiomorphic adenoma gene-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-3221574-1	chr15	3221474	3221674	+	555.0	f1_c57bl6.idr	Intergenic	Intergenic	-49193.0	NM_001042613	20363.0	Mm.392203	NM_009155	ENSMUSG00000064373	Selenop	AU018766|D15Ucla1|Se-P|Sepp1|selp	selenoprotein P	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124454971-2	chr6	124454871	124455071	+	769.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346656, intron 8 of 17)	Lx5c|LINE|L1	7773.0	NM_001346656	232370.0	Mm.193701	NM_153508	ENSMUSG00000008153	Clstn3	CSTN3|Cs3|Cst-3|alc-beta	calsyntenin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44550578-2	chr7	44550478	44550678	+	802.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_009473, intron 8 of 9)	intron (NM_009473, intron 8 of 9)	-1763.0	NM_011131	18971.0	Mm.16549	NM_011131	ENSMUSG00000038644	Pold1	125kDa	polymerase (DNA directed), delta 1, catalytic subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-62844982-3	chr9	62844883	62845083	+	765.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033175, intron 2 of 6)	intron (NM_001033175, intron 2 of 6)	6196.0	NM_001033175	76524.0	Mm.283636	NM_001033175	ENSMUSG00000032245	Cln6	1810065L06Rik|AW743417|D9Bwg1455e|nclf	ceroid-lipofuscinosis, neuronal 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-71294863-3	chr12	71294759	71294959	+	997.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15025.0	NM_021532	59036.0	Mm.46662	NM_021532	ENSMUSG00000044548	Dact1	4921528D17Rik|AI115603|DAPPER|DAPPER1|FRODO|Frd1|Frodo1|MDpr1|MTNG3|THYEX3	dishevelled-binding antagonist of beta-catenin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-72866401-2	chr15	72866285	72866485	+	833.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164642, intron 16 of 16)	intron (NM_001164642, intron 16 of 16)	-56061.0	NR_002864	353342.0	Mm.440245	NR_002864	ENSMUSG00000106847	Peg13	-	paternally expressed 13	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-5313478-2	chr9	5313378	5313578	+	808.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_007609, intron 1 of 8)	L1_Mus2|LINE|L1	4629.0	NM_007609	12363.0	Mm.1569	NM_007609	ENSMUSG00000033538	Casp4	CASP-11|CASP-4|Casp11|Caspl|ich-3	caspase 4, apoptosis-related cysteine peptidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-12906571-2	chr13	12906471	12906671	+	811.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	98759.0	NM_031191	18811.0	Mm.88796	NM_031191	ENSMUSG00000079092	Prl2c2	Ghd2|MRP-1|PLF-1|Plf|Plf1	prolactin family 2, subfamily c, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-61137654-3	chr2	61137547	61137747	+	955.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-162496.0	NR_045335	100038493.0	Mm.388076	NR_045335	ENSMUSG00000075325	Gm13582	-	predicted gene 13582	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-113154182-4	chr12	113154095	113154295	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_007763)	TTS (NM_007763)	2183.0	NM_007763	12925.0	Mm.272368	NM_007763	ENSMUSG00000006360	Crip1	CRHP|CRP1|Crip	cysteine-rich protein 1 (intestinal)	protein-coding	3.71413828432667	2.95200413490271	4.60808407982043	2.75367595527728	4.17235874904656	3.11938600854014	3.85354753190841	3.73821244640523	0.0739233186447503	0.901092500873708	0.998431161219273
Merged-chr2-150914364-3	chr2	150914286	150914486	+	881.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027014, intron 2 of 6)	intron (NM_027014, intron 2 of 6)	4792.0	NM_001163476	69270.0	Mm.271603	NM_027014	ENSMUSG00000027454	Gins1	2810418N01Rik|Gins4|PSF1|mKIAA0186	GINS complex subunit 1 (Psf1 homolog)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-14912888-2	chr3	14912788	14912988	+	612.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	26600.0	NM_009801	12349.0	Mm.1186	NM_009801	ENSMUSG00000027562	Car2	AI131712|CAII|Ca2|Car-2|Ltw-5|Lvtw-5	carbonic anhydrase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-98132750-2	chr7	98132650	98132850	+	562.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007602, intron 5 of 12)	intron (NM_007602, intron 5 of 12)	12697.0	NM_011010	18378.0	Mm.440368	NM_011010	ENSMUSG00000074006	Omp	-	olfactory marker protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-142922697-2	chr5	142922597	142922797	+	825.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-15943.0	NM_007393	11461.0	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111443324-2	chr12	111443224	111443424	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009396, intron 1 of 11)	intron (NM_009396, intron 1 of 11)	663.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-87154621-1	chr17	87154521	87154721	+	681.0	f0_balb.idr	Intergenic	L1MEf|LINE|L1	40321.0	NR_046016	399626.0	Mm.396062	NR_046016		C330024C12Rik	-	RIKEN cDNA C330024C12 gene	ncRNA	-1.26158838883041	-1.23491885943196	-0.932285682414493	-1.253498770181	-0.991415215585255	-1.23270831899588	-1.24281036665307	-1.25199890057848	-0.196493622954895	0.95427149369431	1
Merged-chr17-43036306-4	chr17	43036227	43036427	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178589, intron 1 of 5)	intron (NM_178589, intron 1 of 5)	19772.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56717762-4	chr17	56717656	56717856	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178926)	promoter-TSS (NM_178926)	-6.0	NM_027244	69875.0	Mm.279823	NM_027244	ENSMUSG00000002379	Ndufa11	2010012C24Rik|AV006275|B14.7	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-35045145-2	chr9	35045045	35045245	+	721.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-71583.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-124863094-4	chr8	124862981	124863181	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025615)	promoter-TSS (NM_025615)	48.0	NM_010322	14712.0	Mm.29114	NM_010322	ENSMUSG00000031985	Gnpat	AU019525|D1Ertd819e|DHAPAT	glyceronephosphate O-acyltransferase	protein-coding	2.18306602774001	1.86782646819021	1.46211183344413	2.38206631686844	2.20122748456958	1.71092734942298	1.47081988785479	2.02187496278656	-0.377822105402033	0.703780949027324	0.998431161219273
Merged-chr5-150598988-4	chr5	150598888	150599088	+	983.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001362416)	TTS (NM_001362416)	-4463.0	NM_133898	100637.0	Mm.279932	NM_133898	ENSMUSG00000041132	N4bp2l1	2410024N18Rik|AI428195|B230342M21Rik	NEDD4 binding protein 2-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-119108984-8	chr4	119108923	119109123	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011400, intron 1 of 9)	CpG	278.0	NM_011400	20525.0	Mm.21002	NM_011400	ENSMUSG00000028645	Slc2a1	Glut-1|Glut1	solute carrier family 2 (facilitated glucose transporter), member 1	protein-coding	4.56385737483101	4.38803072230855	4.66092177889422	4.54154765826004	4.70211191573454	4.64525620161161	4.73758392987336	3.54813698931155	-0.071253645223282	0.858997158868451	0.998431161219273
Merged-chr19-47067673-4	chr19	47067545	47067745	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177342)	promoter-TSS (NM_177342)	-103.0	NM_177342	226182.0	Mm.301522	NM_177342	ENSMUSG00000025049	Taf5	6330528C20Rik|AV117817	TATA-box binding protein associated factor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-34771256-3	chr2	34771215	34771415	+	998.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022310)	promoter-TSS (NM_022310)	-775.0	NM_001163434	14828.0	Mm.330160	NM_022310	ENSMUSG00000026864	Hspa5	AL022860|AU019543|Bip|D2Wsu141e|D2Wsu17e|Grp78|Hsce70|SEZ-7|Sez7|baffled|mBiP	heat shock protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-100639134-4	chr5	100639024	100639224	+	993.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35132.0	NM_027978	71883.0	Mm.260661	NM_027978	ENSMUSG00000029319	Coq2	2310002F18Rik|PHB:PPT	coenzyme Q2 4-hydroxybenzoate polyprenyltransferase	protein-coding	3.43758393733535	2.03149324485385	2.19215251715377	2.6507298422935	4.07874856889773	4.0760501492347	3.82333454007372	4.2664977217715	2.06372584242645	0.000597938460405967	0.0129643441632592
Merged-chr3-97230776-2	chr3	97230676	97230876	+	775.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-3412.0	NM_029933	77578.0	Mm.226175	NM_029933	ENSMUSG00000038256	Bcl9	2610202E01Rik|8030475K17Rik|A330041G23Rik|Gm130	B cell CLL/lymphoma 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19662684-2	chr7	19662584	19662784	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019649, intron 1 of 13)	intron (NM_019649, intron 1 of 13)	2346.0	NM_019649	56457.0	Mm.290960	NM_019649	ENSMUSG00000002981	Clptm1	HS9|N14	cleft lip and palate associated transmembrane protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-142456490-2	chr5	142456390	142456590	+	860.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_199068, exon 9 of 9)	exon (NM_199068, exon 9 of 9)	-7441.0	NM_172725	231855.0	Mm.78250	NM_172725	ENSMUSG00000039623	Ap5z1	C330006K01Rik	adaptor-related protein complex 5, zeta 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-37963106-4	chr19	37962986	37963186	+	906.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302140, intron 19 of 53)	L1MB3|LINE|L1	80491.0	NM_001099634	226101.0	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding	4.27237126835686	4.12612180811549	3.58388276864959	4.1940318906609	2.45830176916496	3.73502996813471	2.99265954859176	3.12918337515777	-1.38070756677514	0.0108671692566998	0.115588915551316
Merged-chr16-15985025-3	chr16	15984920	15985120	+	789.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355731, intron 7 of 18)	intron (NM_001355731, intron 7 of 18)	97734.0	NM_007679	12609.0	Mm.347407	NM_007679	ENSMUSG00000071637	Cebpd	c/EBPdelta	CCAAT/enhancer binding protein (C/EBP), delta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-82868836-4	chr7	82868696	82868896	+	774.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175366, exon 2 of 2)	exon (NM_175366, exon 2 of 2)	1463.0	NM_175366	108797.0	Mm.306789	NM_175366	ENSMUSG00000057706	Mex3b	4931439A04Rik|M-04814|Rkhd3|mKIAA2009	mex3 RNA binding family member B	protein-coding	-1.84362945061595	-1.81329140012928	-1.67810947190254	-1.83000206547234	-1.84149977556685	-1.81130325271815	-1.67603257143677	-1.82865309133977	0.037684011990387	0.991491645451152	1
Merged-chr6-108417703-3	chr6	108417601	108417801	+	907.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 38 of 61)	intron (NM_010585, intron 38 of 61)	-72042.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-67458879-2	chr7	67458779	67458979	+	741.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-86021.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-98671147-2	chr7	98671047	98671247	+	690.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14578.0	NM_172280	233545.0	Mm.387819	NM_172280	ENSMUSG00000035401	Emsy	2210018M11Rik|2310016L09Rik|AU019521|AU019557	EMSY, BRCA2-interacting transcriptional repressor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133109388-4	chr4	133109262	133109462	+	888.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21271.0	NM_153423	242687.0	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	3.16521060419401	1.73546255933215	3.53759176401318	2.32891431005122	4.67481188852887	4.48875033195645	3.38612586388588	3.98443405708054	1.9771633484472	0.0016091983213557	0.028617334179287
Merged-chr15-90618149-3	chr15	90618050	90618250	+	638.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357979, intron 4 of 18)	intron (NM_001357979, intron 4 of 18)	61238.0	NM_025815	66871.0	Mm.290991	NM_025815	ENSMUSG00000052560	Cpne8	1200003E11Rik|1500031E20Rik	copine VIII	protein-coding	0.410779298297698	0.637924676530375	0.842565933609599	0.278171903677921	0.271216738084915	0.645523551499512	0.28450256221444	0.810088673085418	-0.218887770596296	0.904623000328231	1
Merged-chr13-81691801-4	chr13	81691708	81691908	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081176, intron 3 of 7)	intron (NM_001081176, intron 3 of 7)	19205.0	NM_001081176	67486.0	Mm.279781	NM_001081176	ENSMUSG00000035834	Polr3g	2310047G20Rik|AV275904|RPC32|RPC7	polymerase (RNA) III (DNA directed) polypeptide G	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-100468324-2	chr15	100468224	100468424	+	792.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357982)	promoter-TSS (NM_001357982)	-687.0	NM_001357983	68614.0	Mm.275272	NM_134093	ENSMUSG00000037353	Letmd1	1110019O13Rik|AI593524|BB130465|BB235638|HCCR-2|HCCR1|MCC-32|Mccr	LETM1 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-31453766-3	chr6	31453700	31453900	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013791, intron 8 of 17)	RSINE1|SINE|B4	54972.0	NM_013791	27418.0	Mm.238038	NM_013791	ENSMUSG00000025609	Mkln1	A130067F06Rik|AU015903|BB154892	muskelin 1, intracellular mediator containing kelch motifs	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-21450355-4	chr17	21450256	21450456	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001308323)	promoter-TSS (NM_001308323)	-18.0	NM_001308323	22709.0	Mm.293030	NM_009558	ENSMUSG00000023892	Zfp51	Zfp-51|zfec12	zinc finger protein 51	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-31285008-4	chr9	31284906	31285106	+	710.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13605.0	NM_001101597	638580.0	Mm.373655	NM_001101597		Gm7244	EG638580	predicted gene 7244	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-29389319-3	chr17	29389218	29389418	+	845.577759	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28404.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	3.66562488648217	3.66324227304977	3.21297161021688	4.34442819699302	1.6711068179603	2.75145147845505	1.54802342405904	3.22369833345878	-2.11356243049974	0.00354683023764319	0.0510658430294916
Merged-chr3-96568689-3	chr3	96568556	96568756	+	907.3666380000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17B2|LTR|ERVK	-1855.0	NR_040409	100038464.0	Mm.475126	NR_040409	ENSMUSG00000074398	Gm15441	-	predicted gene 15441	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-22097746-2	chr16	22097646	22097846	+	867.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183029, intron 2 of 15)	intron (NM_183029, intron 2 of 15)	65553.0	NM_183029	319765.0	Mm.489442	NM_183029	ENSMUSG00000033581	Igf2bp2	C330012H03Rik|IMP-2|Imp2|Neilsen	insulin-like growth factor 2 mRNA binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-115694314-4	chr3	115694226	115694426	+	951.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20729.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	2.87744572920292	3.4238531097475	3.12136523927227	3.5239527780309	3.71631538454835	3.01918148969405	3.24514162949467	3.32051884445933	0.166122122493378	0.77367329890542	0.998431161219273
Merged-chr1-150759715-1	chr1	150759615	150759815	+	727.0	f0_balb.idr	intron (NM_001024720, intron 15 of 106)	intron (NM_001024720, intron 15 of 106)	233720.0	NM_001024720	545370.0	Mm.379425	NM_001024720	ENSMUSG00000066842	Hmcn1	EG545370|FIBL-6|Gm201	hemicentin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-79377044-2	chr8	79376944	79377144	+	566.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008539, intron 1 of 6)	RSINE1|SINE|B4	22424.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55540275-4	chr14	55540173	55540373	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028994)	promoter-TSS (NM_028994)	7.0	NM_028994	74551.0	Mm.29856	NM_028994	ENSMUSG00000040618	Pck2	1810010O14Rik|9130022B02Rik|PEPCK-M	phosphoenolpyruvate carboxykinase 2 (mitochondrial)	protein-coding	5.24771052364179	5.64167982331293	4.4541184937889	4.84514151225659	5.35412687894442	5.30835741400611	4.16588723869923	5.08281550264715	-0.0718826460911029	0.847212096047779	0.998431161219273
Merged-chr11-52368454-3	chr11	52368371	52368571	+	876.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011694, intron 1 of 8)	intron (NM_011694, intron 1 of 8)	7609.0	NM_011694	22333.0	Mm.3555	NM_011694	ENSMUSG00000020402	Vdac1	AL033343|Vdac5|mVDAC1|mVDAC5	voltage-dependent anion channel 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-88064330-2	chr6	88064230	88064430	+	617.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-19060.0	NM_009005	19349.0	Mm.333233	NM_009005	ENSMUSG00000079477	Rab7	Rab7a	RAB7, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-44565295-2	chr4	44565195	44565395	+	769.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008782, intron 8 of 9)	intron (NM_008782, intron 8 of 9)	42273.0	NR_039580	100628590.0		NR_039580	ENSMUSG00000092761	Mir5120	mmu-mir-5120|mu-mir-5120	microRNA 5120	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-102047511-2	chr5	102047411	102047611	+	694.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 1 of 66)	B2_Mm2|SINE|B2	22410.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71540900-2	chr8	71540800	71541000	+	606.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13A1|LTR|ERVK	-2030.0	NM_028617	73711.0	Mm.307770	NM_028617	ENSMUSG00000031813	Mvb12a	1110012M11Rik|Fam125a	multivesicular body subunit 12A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-31179598-2	chr9	31179462	31179662	+	750.366699	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357698, intron 1 of 17)	B2_Mm2|SINE|B2	32286.0	NM_001357698	11804.0	Mm.19133	NM_009691	ENSMUSG00000031996	Aplp2	AI790698|APLP-2|CDEBP	amyloid beta (A4) precursor-like protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-31628481-1	chr18	31628381	31628581	+	877.0	f1_balb.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-5887.0	NM_001357554	269003.0	Mm.194538	NM_172965	ENSMUSG00000024260	Sap130	2610304F09Rik|6720406D06	Sin3A associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-142081924-4	chr4	142081806	142082006	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145402, intron 1 of 2)	intron (NM_145402, intron 1 of 2)	-2392.0	NR_027137	100038693.0	Mm.402714	NR_027137	ENSMUSG00000073728	Tmem51os1	Gm10565|Tmem51as1	Tmem51 opposite strand 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-123934135-2	chr1	123934035	123934235	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_199021, intron 1 of 25)	intron (NM_199021, intron 1 of 25)	111424.0	NM_199021	269109.0	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-134352193-2	chr5	134352093	134352293	+	891.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	25739.0	NR_039544	100628570.0		NR_039544	ENSMUSG00000093311	Mir3965	mmu-mir-3965|mu-mir-3965	microRNA 3965	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-174329191-5	chr2	174329087	174329287	+	994.7333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001077510)	promoter-TSS (NM_001077510)	-883.0	NM_201616	14683.0	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-86945296-3	chr12	86945186	86945386	+	713.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1755.0	NM_001289431	217732.0	Mm.22337	NM_173735	ENSMUSG00000034157	Cipc	2310044G17Rik|AI842544|AI853744|Kiaa1737|mKIAA1737	CLOCK interacting protein, circadian	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-10209220-4	chr14	10209123	10209323	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360141, intron 5 of 9)	MTD|LTR|ERVL-MaLR	244235.0	NM_001308286	14198.0	Mm.397619	NM_010210	ENSMUSG00000060579	Fhit	AW045638|Fra14A2	fragile histidine triad gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-51590386-2	chr10	51590286	51590486	+	745.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029894)	promoter-TSS (NM_029894)	74.0	NM_029894	77296.0	Mm.30588	NM_029894	ENSMUSG00000019909	Fam162b	9430073N08Rik	family with sequence similarity 162, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-89695543-3	chr10	89695505	89695705	+	836.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_130956, intron 2 of 2)	intron (NR_130956, intron 2 of 2)	9242.0	NR_130956	69002.0	Mm.293947	NR_130956	ENSMUSG00000097383	1500026H17Rik	-	RIKEN cDNA 1500026H17 gene	ncRNA	0.620084547288666	0.695028864893134	0.955448349019083	0.919982476080879	0.62485629607739	0.498530809712135	1.28212374213565	0.655214892021721	0.0497431610873525	0.974021776938375	1
Merged-chr6-115380240-2	chr6	115380140	115380340	+	658.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001308354, intron 1 of 7)	RLTR20A4|LTR|ERVK	17891.0	NM_001308354	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-118423741-3	chr14	118423574	118423774	+	720.194458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	57796.0	NR_045624	73306.0	Mm.362328	NR_045624	ENSMUSG00000099911	1700044C05Rik	-	RIKEN cDNA 1700044C05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-32104330-4	chr5	32104244	32104444	+	872.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32128.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-152463615-3	chr3	152463516	152463716	+	995.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001346655)	TTS (NM_001346655)	66932.0	NM_001287139	108946.0	Mm.379292	NM_198416	ENSMUSG00000039068	Zzz3	3110065C23Rik|6430567E01Rik|AA408566|AI481057|AW556059|R75514	zinc finger, ZZ domain containing 3	protein-coding	1.95298212488158	3.4383985650385	2.13020051008164	1.51435778952606	1.97043241694432	1.62304000435982	2.41810113993605	2.72958343342691	-0.492444721517139	0.598939515403765	0.972303230574462
Merged-chr7-110613784-4	chr7	110613659	110613859	+	795.633301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177324, intron 1 of 40)	intron (NM_177324, intron 1 of 40)	1161.0	NM_177324	319934.0	Mm.102970	NM_177324	ENSMUSG00000038371	Sbf2	4833411B01Rik|AA414977|AI317167|B430219L04Rik|Mtmr13|mMTMH1	SET binding factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-80110418-2	chr12	80110318	80110518	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_007564, exon 2 of 2)	exon (NM_007564, exon 2 of 2)	2595.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-96362177-2	chr9	96362077	96362277	+	856.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357213, intron 1 of 7)	intron (NM_001357213, intron 1 of 7)	1538.0	NM_001357213	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	1.12005482257875	0.834134279103915	1.81740487363773	1.66517468223298	1.38095714542493	0.837565827532802	0.822141499567971	1.76777430792386	-0.52124545793627	0.710789876362825	0.998431161219273
Merged-chr15-38653157-4	chr15	38653087	38653287	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8717.0	NM_025494	66335.0	Mm.276618	NM_025494	ENSMUSG00000022295	Atp6v1c1	1700025B18Rik|U13839	ATPase, H+ transporting, lysosomal V1 subunit C1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-100398796-4	chr13	100398696	100398896	+	872.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	54068.0	NM_008670	17940.0	Mm.6898	NM_008670	ENSMUSG00000021640	Naip1	AV364616|Birc1a|D13Lsd1|Naip|Naip-rs1	NLR family, apoptosis inhibitory protein 1	protein-coding	1.47085879400786	2.54441477568359	0.843258762069165	1.25827298318477	1.89442648124083	0.870142773783593	0.848188920279715	1.57482400807099	-0.927715660742671	0.486640536896801	0.932503166794264
Merged-chr7-135760880-2	chr7	135760780	135760980	+	551.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44501.0	NM_001081117	17345.0	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-28463939-3	chr10	28463841	28464041	+	979.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359356, intron 7 of 30)	intron (NM_001359356, intron 7 of 30)	-204419.0	NM_001305663	210757.0	Mm.123021	NM_178666	ENSMUSG00000049109	Themis	E430004N04Rik|Gasp|Spot|Tsepa|thylex	thymocyte selection associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-46487521-4	chr4	46487414	46487614	+	858.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1815.0	NM_053179	94181.0	Mm.249349	NM_053179	ENSMUSG00000028334	Nans	4632418E04Rik|BB056474|Sas	N-acetylneuraminic acid synthase (sialic acid synthase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-108304928-2	chr5	108304744	108304944	+	705.583374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	-8081.0	NM_001081234	433931.0	Mm.319881	NM_001081234	ENSMUSG00000029263	Pigg	Gpi7	phosphatidylinositol glycan anchor biosynthesis, class G	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-55355560-2	chr3	55355460	55355660	+	720.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357475, intron 3 of 16)	intron (NM_001357475, intron 3 of 16)	-106168.0	NM_001195539	13175.0	Mm.393242	NM_019978	ENSMUSG00000027797	Dclk1	1700113D08Rik|2810480F11Rik|AI836758|Click-I|Cpg16|Dcamkl1|Dcl|Dclk|mKIAA0369	doublecortin-like kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-64734675-1	chr14	64734575	64734775	+	631.0	f1_c57bl6.idr	intron (NM_001081177, intron 10 of 39)	MLTR25A|LTR|ERVK	82144.0	NM_001081177	16554.0	Mm.23611	NM_001081177	ENSMUSG00000060012	Kif13b	5330429L19Rik|6030414C01|AI429803|C130021D12Rik|GAKIN	kinesin family member 13B	protein-coding	0.407585811651793	0.650958002289888	0.269790102069662	0.263961265580369	0.54594162034485	0.659001161091592	1.17060271806191	0.264981577309549	1.91436521620748	0.291099947066154	1
Merged-chr8-115713623-2	chr8	115713523	115713723	+	602.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6729.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-12305526-2	chr12	12305426	12305626	+	691.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001146119, intron 2 of 11)	MTA_Mm|LTR|ERVL-MaLR	43387.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-98921987-2	chr10	98921887	98922087	+	719.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359507, intron 1 of 21)	intron (NM_001359507, intron 1 of 21)	6835.0	NM_026482	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-45950691-4	chr13	45950574	45950774	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199304, intron 2 of 6)	intron (NM_001199304, intron 2 of 6)	14317.0	NM_001199304	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-71037710-4	chr2	71037601	71037801	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145524, intron 1 of 9)	MLT1L|LTR|ERVL-MaLR	17905.0	NM_145524	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-53237698-3	chr15	53237601	53237801	+	956.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	108482.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-62463257-1	chr7	62463157	62463357	+	744.0	f0_balb.idr	3' UTR (NM_013788, exon 1 of 1)	3' UTR (NM_013788, exon 1 of 1)	1253.0	NM_013788	27412.0	Mm.422745	NM_013788	ENSMUSG00000070526	Peg12	Frat3	paternally expressed 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-76748908-3	chr14	76748796	76748996	+	944.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11235.0	NR_153763	73883.0	Mm.489041	NR_153763		4930431P22Rik	-	RIKEN cDNA 4930431P22 gene	ncRNA	-1.84354474832578	-1.81325489144778	-1.53416061964661	-1.82993901100912	-1.8414184563789	-1.81126990231468	-1.82034119297928	-1.82859217979378	-1.52252619601533	0.665276690233728	1
Merged-chr16-30600633-4	chr16	30600545	30600745	+	874.220215	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177632, exon 1 of 1)	exon (NM_177632, exon 1 of 1)	922.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-115571907-4	chr8	115571793	115571993	+	939.43335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	135001.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-8857162-2	chr17	8857072	8857272	+	654.5	f0_balb.idr|f0_c57.idr	intron (NM_001347321, intron 1 of 21)	intron (NM_001347321, intron 1 of 21)	7187.0	NM_001347321	23984.0	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-63876984-2	chr17	63876884	63877084	+	897.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037997, intron 1 of 18)	intron (NM_001037997, intron 1 of 18)	-1082.0	NM_001286415	14158.0	Mm.23039	NM_008000	ENSMUSG00000000127	Fer	AV082135|C330004K01Rik|Fert|Fert2	fer (fms/fps related) protein kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127070825-2	chr10	127070725	127070925	+	688.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025982)	promoter-TSS (NM_025982)	344.0	NR_040660	100504703.0	Mm.387029	NR_040660	ENSMUSG00000112639	A730063M14Rik	-	RIKEN cDNA A730063M14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118627696-2	chr9	118627596	118627796	+	607.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 2 of 27)	RLTR17B_Mm|LTR|ERVK	20987.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-58672837-1	chr3	58672737	58672937	+	715.0	f1_balb.idr	Intergenic	Intergenic	19551.0	NM_009174	20439.0	Mm.2847	NM_009174	ENSMUSG00000036432	Siah2	AA415433|Sinh2	siah E3 ubiquitin protein ligase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-22866179-2	chr17	22866079	22866279	+	872.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177358, intron 1 of 5)	intron (NM_177358, intron 1 of 5)	955.0	NM_177358	240041.0	Mm.328828	NM_177358	ENSMUSG00000059142	Zfp945	A630033E08Rik|C730040L01Rik	zinc finger protein 945	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44579597-4	chr9	44579482	44579682	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25310.0	NM_001110826	13209.0	Mm.267061	NM_007841	ENSMUSG00000032097	Ddx6	1110001P04Rik|C430015D01Rik|E230023J21Rik|HLR2|mRCK/P54|p54|rck	DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-23683355-2	chr17	23683255	23683455	+	782.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_018777)	TTS (NM_018777)	671.0	NM_020293	56863.0	Mm.491368	NM_020293	ENSMUSG00000066720	Cldn9	nmf329	claudin 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-47747133-2	chr9	47747008	47747208	+	827.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	71100.0	NR_046048	100038460.0	Mm.447649	NR_046048		Gm10677	-	predicted gene 10677	ncRNA	-0.219711355542923	-0.756277302245537	-0.75931612068893	-0.761653780761687	-0.391964611888452	-0.755590941894944	-0.758646744977994	-0.761245834329488	-0.676295854267163	0.822509139760631	1
Merged-chr10-19687900-4	chr10	19687865	19688065	+	891.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24622.0	NM_172786	237313.0	Mm.234667	NM_172786	ENSMUSG00000020007	Il20ra	E230031K19	interleukin 20 receptor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-103346485-2	chr15	103346385	103346585	+	666.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001314041, intron 29 of 30)	intron (NM_001314041, intron 29 of 30)	4040.0	NR_105928	102466775.0		NR_105928	ENSMUSG00000098419	Mir6963	Gm27724|mmu-mir-6963	microRNA 6963	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118712910-1	chr9	118712810	118713010	+	1000.0	f1_balb.idr	intron (NM_001113514, intron 1 of 13)	intron (NM_001113514, intron 1 of 13)	1218.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	-0.23737450015397	0.238593212987315	-0.369567179682638	-0.372683491636498	0.0957232931671908	-0.364607927186373	-0.368675456788858	-0.372139416819151	-0.700149232606778	0.780987610652263	1
Merged-chr16-94524180-2	chr16	94524080	94524280	+	962.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_007834, intron 1 of 7)	intron (NM_007834, intron 1 of 7)	2449.0	NM_007834	13185.0	Mm.7472	NM_007834	ENSMUSG00000022898	Dscr3	AW538125|Dcra	DSCR3 arrestin fold containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-45686471-2	chr14	45686371	45686571	+	621.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28328.0	NM_001042719	114874.0	Mm.121918	NM_176845	ENSMUSG00000037697	Ddhd1	Mir5131|PA-PLA1	DDHD domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-55502596-1	chr15	55502496	55502696	+	737.0	f0_balb.idr	intron (NM_181277, intron 45 of 47)	intron (NM_181277, intron 45 of 47)	54716.0	NM_026759	68537.0	Mm.236795	NM_026759	ENSMUSG00000022370	Mrpl13	1110002D09Rik	mitochondrial ribosomal protein L13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67048444-2	chr10	67048344	67048544	+	627.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_178606, intron 2 of 7)	intron (NM_178606, intron 2 of 7)	43369.0	NR_110511	102634101.0	Mm.445258	NR_110511	ENSMUSG00000112925	Gm31763	-	predicted gene, 31763	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-120475745-2	chr10	120475645	120475845	+	746.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347170, intron 1 of 5)	CpG	724.0	NM_001347170	15364.0	Mm.157190	NM_010441	ENSMUSG00000056758	Hmga2	9430083A20Rik|HMGI-C|Hmgic|pg|pygmy	high mobility group AT-hook 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-78030518-2	chr11	78030418	78030618	+	755.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_174852)	TTS (NM_174852)	-1795.0	NM_183286	70451.0	Mm.390342	NM_183286	ENSMUSG00000020834	Dhrs13	2610209N15Rik	dehydrogenase/reductase (SDR family) member 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-90667050-4	chr15	90666950	90667150	+	963.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033851, intron 1 of 3)	intron (NM_001033851, intron 1 of 3)	12338.0	NM_025815	66871.0	Mm.290991	NM_025815	ENSMUSG00000052560	Cpne8	1200003E11Rik|1500031E20Rik	copine VIII	protein-coding	3.26755921739958	2.96927950239108	2.57717198027479	4.18059606484347	3.29474018795122	2.99213034057952	2.59893560464908	3.98487695706476	-0.117125976185569	0.859275055881241	0.998431161219273
Merged-chr12-80877866-4	chr12	80877788	80877988	+	833.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_178682, exon 6 of 6)	3' UTR (NM_178682, exon 6 of 6)	46559.0	NR_033786	67340.0	Mm.386790	NR_033786	ENSMUSG00000101912	1700052I22Rik	-	RIKEN cDNA 1700052I22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-110843373-4	chr12	110843281	110843481	+	896.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_152102, exon 2 of 2)	non-coding (NR_152102, exon 2 of 2)	2352.0	NR_152102	66709.0	Mm.390504	NR_152102		4921507G05Rik	-	RIKEN cDNA 4921507G05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-47088924-3	chr2	47088835	47089035	+	748.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	1392330.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36514220-4	chr18	36514183	36514383	+	945.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010415, intron 2 of 5)	intron (NM_010415, intron 2 of 5)	1522.0	NM_010415	15200.0	Mm.289681	NM_010415	ENSMUSG00000024486	Hbegf	AW047313|Dtr|Dts|Hegfl	heparin-binding EGF-like growth factor	protein-coding	0.999004252022316	1.51460087304073	1.34690139900503	1.39376401788007	0.56031073475952	0.596182156499831	0.584669635372004	0.574725901136889	-4.77643247702146	0.00333342794250578	0.0489328733126236
Merged-chr5-62764345-4	chr5	62764251	62764451	+	624.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178407, intron 1 of 32)	intron (NM_178407, intron 1 of 32)	1826.0	NM_178407	212285.0	Mm.244403	NM_178407	ENSMUSG00000037999	Arap2	Centd1|Gm148|mKIAA0580	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-52196317-6	chr3	52196136	52196336	+	991.805542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72101.0	NM_019739	56458.0	Mm.29891	NM_019739	ENSMUSG00000044167	Foxo1	AI876417|Afxh|FKHR|Fkhr1|Foxo1a	forkhead box O1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88645166-1	chr3	88645066	88645266	+	669.0	f1_balb.idr	intron (NM_001198913, intron 20 of 21)	intron (NM_001198913, intron 20 of 21)	7976.0	NM_181817	242093.0	Mm.269130	NM_181817	ENSMUSG00000049741	Rxfp4	GPCR142|Gpr100|Rln3r2|SALPR	relaxin family peptide receptor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126739623-4	chr7	126739481	126739681	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	-20045.0	NM_011952	26417.0	Mm.8385	NM_011952	ENSMUSG00000063065	Mapk3	Erk-1|Erk1|Ert2|Esrk1|Mnk1|Mtap2k|Prkm3|p44|p44erk1|p44mapk	mitogen-activated protein kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111889415-4	chr12	111889317	111889517	+	907.354126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011625, intron 1 of 16)	MIRb|SINE|MIR	18638.0	NM_011625	21981.0	Mm.313076	NM_011625	ENSMUSG00000021285	Ppp1r13b	AI449786|ASPP1|AW545810|Tp53bp2|Trp53bp2|p85	protein phosphatase 1, regulatory (inhibitor) subunit 13B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-77785474-2	chr11	77785374	77785574	+	709.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011586, intron 1 of 39)	intron (NM_011586, intron 1 of 39)	8239.0	NM_001291212	360013.0	Mm.341248	NM_011586	ENSMUSG00000000631	Myo18a	MAJN|MyoPDZ|MysPDZ|SP-R210	myosin XVIIIA	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-54164919-2	chr6	54164819	54165019	+	698.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163640, intron 1 of 12)	intron (NM_001163640, intron 1 of 12)	-99939.0	NM_001311133	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	-1.16092299174403	-1.1379051904283	-0.982031277601582	-1.15723132419523	-1.16048432249308	-1.1356058682872	-0.828793070803305	-0.994094622438481	1.38627668204413	0.650471754391111	1
Merged-chr7-75667750-4	chr7	75667633	75667833	+	777.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 10 of 36)	intron (NM_029332, intron 10 of 36)	-180605.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115475650-4	chr11	115475553	115475753	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361594)	promoter-TSS (NM_001361594)	-14.0	NM_177778	276905.0	Mm.38019	NM_177778	ENSMUSG00000057219	Armc7	A630084C13|BC023126	armadillo repeat containing 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25025779-2	chr7	25025679	25025879	+	547.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360067, intron 12 of 19)	B4|SINE|B4	-19842.0	NM_001290469	232975.0	Mm.44101	NM_144921	ENSMUSG00000040907	Atp1a3	Atpa-2	ATPase, Na+/K+ transporting, alpha 3 polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-99248703-4	chr5	99248608	99248808	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181318, intron 1 of 13)	intron (NM_181318, intron 1 of 13)	4219.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-127492189-2	chr3	127492088	127492288	+	788.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001327938, intron 1 of 47)	intron (NM_001327938, intron 1 of 47)	6927.0	NM_001327938	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	1.94027753328249	3.03339959967359	2.55200490080403	2.47449586696646	1.51701075460724	1.90722913561128	1.15506479674212	1.12512241637443	-2.90734907713302	0.00556006696701625	0.072353235867962
Merged-chr14-21409821-2	chr14	21409721	21409921	+	769.174988	f1_balb.idr|f1_c57bl6.idr	intron (NM_134079, intron 9 of 10)	intron (NM_134079, intron 9 of 10)	-89949.0	NM_001205241	54169.0	Mm.248967	NM_017479	ENSMUSG00000021767	Kat6b	AI507552|B130044K16Rik|MYST-4|Morf|Myst4|mKIAA0383|qkf|querkopf	K(lysine) acetyltransferase 6B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-115323492-4	chr10	115323419	115323619	+	851.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7928.0	NM_024454	216344.0	Mm.21936	NM_024454	ENSMUSG00000020132	Rab21	9630024B22	RAB21, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19077873-5	chr7	19077735	19077935	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010058, intron 1 of 4)	intron (NM_010058, intron 1 of 4)	1635.0	NM_010058	13401.0	Mm.2852	NM_010058	ENSMUSG00000030410	Dmwd	DMR-N9|Dm9	dystrophia myotonica-containing WD repeat motif	protein-coding	3.38446006091684	2.95505122042444	1.96594502959016	3.94408452942129	2.95603649432594	3.41635105850722	3.20957884790856	3.70162487897959	0.142443345503983	0.830154935612635	0.998431161219273
Merged-chr4-125124945-4	chr4	125124822	125125022	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153159, intron 2 of 5)	intron (NM_153159, intron 2 of 5)	2959.0	NM_153159	230738.0	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-86906401-4	chr17	86906360	86906560	+	852.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10888.0	NM_001277980	78469.0	Mm.67234	NM_030104	ENSMUSG00000037689	Tmem247	1700090G07Rik	transmembrane protein 247	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-91383694-3	chr12	91383603	91383803	+	854.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181815, intron 1 of 25)	MIRb|SINE|MIR	706.0	NM_181815	75216.0	Mm.312204	NM_181815	ENSMUSG00000061533	Cep128	4930534B04Rik|5430424K18Rik|AI449708|AI480494|E230024F20	centrosomal protein 128	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41327536-2	chr19	41327436	41327636	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 6 of 16)	intron (NM_031376, intron 6 of 16)	57534.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-108663444-2	chr6	108663396	108663596	+	691.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_011498, intron 4 of 4)	intron (NM_011498, intron 4 of 4)	-2562.0	NR_104577	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	0.0884350690842813	-0.610967818096186	-0.614475816430264	-0.453241737753927	-0.620990472696091	-0.610176230083345	-0.613702626198898	-0.450521466177398	-2.42201590482274	0.362239876559123	1
Merged-chr8-104077197-4	chr8	104077113	104077313	+	919.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24412.0	NM_009868	12562.0	Mm.21767	NM_009868	ENSMUSG00000031871	Cdh5	7B4|AA408225|Cd144|VE-Cad|VECD|VEcad|Vec	cadherin 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33624932-4	chr16	33624824	33625024	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_134251, exon 9 of 13)	exon (NM_134251, exon 9 of 13)	-59542.0	NM_175256	77446.0	Mm.245741	NM_172934	ENSMUSG00000075254	Heg1	4632417D23Rik|5530401I02Rik|9530025L16Rik|BC038614|Gm629	heart development protein with EGF-like domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-51454944-2	chr10	51454844	51455044	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25668.0	NM_008147	14727.0	Mm.439661	NM_008147	ENSMUSG00000112023	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-112633146-4	chr12	112633065	112633265	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007421, intron 5 of 12)	intron (NM_007421, intron 5 of 12)	-11663.0	NM_001161737	30954.0	Mm.289812	NM_013929	ENSMUSG00000064326	Siva1	CD27bp|Siva	SIVA1, apoptosis-inducing factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-47064927-2	chr11	47064827	47065027	+	728.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011891, intron 6 of 7)	intron (NM_011891, intron 6 of 7)	254128.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	2.24667272135542	2.04786665438241	1.09964136478012	1.30792061346345	2.33584422907309	1.77751646307429	1.1050571265425	2.13601472736927	0.395985836617792	0.733387301625956	0.998431161219273
Merged-chr10-20568487-3	chr10	20568387	20568587	+	724.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013875, intron 2 of 12)	intron (NM_013875, intron 2 of 12)	-20159.0	NM_001347366	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-90833122-4	chr8	90832975	90833175	+	995.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177224, intron 1 of 39)	intron (NM_177224, intron 1 of 39)	4240.0	NM_177224	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	2.2252780065591	2.36843832368876	1.68324455499435	3.31853923693524	1.76971193567298	2.38724410008773	3.75555253628205	2.72134959940401	0.595113644017264	0.49014373467466	0.934345795476137
Merged-chr5-115631864-4	chr5	115631776	115631976	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027810)	promoter-TSS (NR_027810)	-60.0	NR_027810	66123.0	Mm.133063	NM_021417	ENSMUSG00000107121	1110006O24Rik	-	RIKEN cDNA 1110006O24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34295125-2	chr17	34295115	34295315	+	670.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7444.0	NM_010378	14960.0	Mm.235338	NM_010378	ENSMUSG00000036594	H2-Aa	Aalpha|H-2Aa|H2Aa|I-Aalpha|IAalpha|Ia-1|Ia1	histocompatibility 2, class II antigen A, alpha	protein-coding	1.94254764426639	1.75531974670982	1.40179946550538	2.82865498661425	3.01569395922385	3.65103612245294	3.47335531442158	2.51984522424857	2.13261613606693	0.00909729219610982	0.101691905374775
Merged-chr5-101998432-4	chr5	101998340	101998540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 3 of 66)	intron (NM_172882, intron 3 of 66)	71481.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	3.49875177595488	3.66708953331395	3.79670143474054	3.76430968496681	4.51392622994967	4.2984658236404	4.38258389308634	4.15593872256558	0.913236381132124	0.0345350572122726	0.262802293720622
Merged-chr17-88337856-4	chr17	88337751	88337951	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-102853.0	NM_001355743	14236.0	Mm.112824	NM_180974	ENSMUSG00000034998	Foxn2	3230402J05Rik|6030465J18Rik|Fkh19|Foxn1|HTLF	forkhead box N2	protein-coding	4.18321367655215	4.21697188702661	4.01830774535498	3.34816252295494	3.86402123454782	4.24624412472152	4.6622184408774	3.79127179357982	0.271441298607455	0.55737571257787	0.960321604678676
Merged-chr11-101551433-2	chr11	101551333	101551533	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252220)	promoter-TSS (NM_001252220)	522.0	NM_009764	12189.0	Mm.244975	NM_009764	ENSMUSG00000017146	Brca1	-	breast cancer 1, early onset	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-175625658-4	chr1	175625608	175625808	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010209)	promoter-TSS (NM_010209)	-73.0	NM_010209	14194.0	Mm.41502	NM_010209	ENSMUSG00000026526	Fh1	Fh|Fh-1	fumarate hydratase 1	protein-coding	5.77969034971459	6.40959660367963	6.52744194231578	6.48522297353264	6.10251724750241	6.19371981475946	6.49192974051249	6.14458984253414	-0.0923209569799026	0.689891425440343	0.996533206832645
Merged-chr4-32161722-1	chr4	32161622	32161822	+	649.0	f1_balb.idr	Intergenic	Intergenic	197615.0	NM_172688	26409.0	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding	0.741502059070009	1.02824996509097	0.587642044545204	0.577286816983957	1.72753352818835	0.603749117486428	1.60532390361796	0.957979542197276	2.6091887446912	0.0971397924549657	0.48413869975409
Merged-chr8-94711513-4	chr8	94711423	94711623	+	986.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15281.0	NM_026385	67801.0	Mm.279977	NM_026385	ENSMUSG00000031775	Pllp	0610010I06Rik|AV001002|Plapi|Tm4sf11	plasma membrane proteolipid	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-53855173-4	chr19	53855066	53855266	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170847, intron 12 of 13)	intron (NM_001170847, intron 12 of 13)	-37065.0	NM_011050	18569.0	Mm.1605	NM_011050	ENSMUSG00000024975	Pdcd4	D19Ucla1|Ma3|Tis	programmed cell death 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-92877699-2	chr7	92877599	92877799	+	609.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028243, intron 1 of 8)	ORR1B1|LTR|ERVL-MaLR	2446.0	NM_028243	72461.0	Mm.389969	NM_028243	ENSMUSG00000061119	Prcp	2510048K03Rik|2610104A14Rik|AI451719|HUMPCP|PCP	prolylcarboxypeptidase (angiotensinase C)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-62643101-4	chr11	62642975	62643175	+	793.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198861, intron 1 of 3)	intron (NM_198861, intron 1 of 3)	4974.0	NM_001357955	192976.0	Mm.339972	NM_198861	ENSMUSG00000046417	Lrrc75a	Fam211a	leucine rich repeat containing 75A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-118304373-2	chr12	118304273	118304473	+	648.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER31B|LTR|ERV1	-2933.0	NM_001166385	20688.0	Mm.34699	NM_009239	ENSMUSG00000025323	Sp4	5730497N03Rik|HF-1b|HF1-b	trans-acting transcription factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-87404554-4	chr11	87404457	87404657	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031386)	promoter-TSS (NM_031386)	-62.0	NM_053269	114714.0	Mm.37376	NM_053269	ENSMUSG00000007646	Rad51c	R51H3|Rad51l2	RAD51 paralog C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53093355-2	chr4	53093255	53093455	+	728.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 8 of 49)	intron (NM_013454, intron 8 of 49)	66540.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-57234299-2	chr16	57234199	57234399	+	994.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2833.0	NM_001358433	67581.0	Mm.257819	NM_026254	ENSMUSG00000022749	Tbc1d23	4930451A13Rik|AU015720|AU043671|AU043778|D030022P07Rik|W51689	TBC1 domain family, member 23	protein-coding	0.106040860128882	0.518798268647513	1.12268603919225	0.115769889433641	0.107495607379816	0.527003958105235	0.323885960892589	0.116786993707973	-1.66210727153712	0.405321188099132	1
Merged-chr11-117783241-4	chr11	117783118	117783318	+	976.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001195088, exon 2 of 16)	exon (NM_001195088, exon 2 of 16)	560.0	NM_001195088	217356.0	Mm.116675	NM_181856	ENSMUSG00000050106	Tmc8	EVIN2|Ever2|mFLJ00400	transmembrane channel-like gene family 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101270120-2	chr15	101270020	101270220	+	721.333313	f1_balb.idr|f1_c57bl6.idr	exon (NM_010444, exon 2 of 7)	exon (NM_010444, exon 2 of 7)	3274.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-86300838-4	chr17	86300718	86300918	+	802.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011104, intron 1 of 14)	intron (NM_011104, intron 1 of 14)	-13640.0	NR_045435	72104.0	Mm.443401	NR_045435	ENSMUSG00000100738	2010106C02Rik	-	RIKEN cDNA 2010106C02 gene	ncRNA	0.938404889887841	0.510011006777074	0.66750990566997	0.498621406773456	0.491687617305327	0.694778910542366	1.22488633240446	1.10091732757027	1.51533656924754	0.37439141200382	1
Merged-chr18-15150897-4	chr18	15150773	15150973	+	747.224976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134112, intron 1 of 4)	CpG	573.0	NM_134112	106931.0	Mm.329299	NM_134112	ENSMUSG00000036225	Kctd1	4933402K10Rik|AI661543|AW553000	potassium channel tetramerisation domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80324377-4	chr7	80324259	80324459	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173445)	promoter-TSS (NM_173445)	95.0	NM_173445	269955.0	Mm.474502	NM_173445	ENSMUSG00000038930	Rccd1	5830436H09|E430018M08Rik	RCC1 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-148649533-2	chr5	148649433	148649633	+	577.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-92307.0	NR_028285	70138.0	Mm.417834	NR_028285	ENSMUSG00000086494	2210417A02Rik	AV081004	RIKEN cDNA 2210417A02 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-86688577-2	chr11	86688477	86688677	+	886.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175004, intron 2 of 2)	(CACTA)n|Simple_repeat|Simple_repeat	4496.0	NM_001098810	217057.0	Mm.24868	NM_175004	ENSMUSG00000072582	Ptrh2	A230072I16Rik|Bit1|CGI-147	peptidyl-tRNA hydrolase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-52040185-1	chr16	52040085	52040285	+	552.0	f0_balb.idr	intron (NM_001033238, intron 2 of 17)	intron (NM_001033238, intron 2 of 17)	8636.0	NM_001033238	208650.0	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-97769942-1	chr13	97769842	97770042	+	621.0	f0_balb.idr	Intergenic	Intergenic	18830.0	NR_152263	111365222.0	Mm.440079	NR_152263		Eyelinc18	-	uncharacterized EyeLinc18	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-116371751-4	chr7	116371651	116371851	+	808.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011083, intron 13 of 32)	intron (NM_011083, intron 13 of 32)	-37561.0	NM_026533	68052.0	Mm.14798	NM_026533	ENSMUSG00000090862	Rps13	2700063M04Rik	ribosomal protein S13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-117396628-4	chr5	117396513	117396713	+	814.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7590.0	NM_028128	72151.0	Mm.27997	NM_028128	ENSMUSG00000029363	Rfc5	2610020K06Rik|2610209F07Rik|36.5kDa|36kDa|Recc5	replication factor C (activator 1) 5	protein-coding	2.81584456865969	1.29596584497342	1.91412918733284	2.13960691872299	3.04447347190181	1.58186282943663	1.92945394981004	2.15112058896466	0.319629576423126	0.747950651596873	0.998431161219273
Merged-chr13-35741958-4	chr13	35741841	35742041	+	955.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001123386, intron 1 of 6)	CpG	539.0	NM_001123386	12593.0	Mm.29002	NM_009881	ENSMUSG00000059288	Cdyl	AI325931	chromodomain protein, Y chromosome-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-62373941-4	chr9	62373847	62374047	+	724.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009672, intron 4 of 6)	intron (NM_009672, intron 4 of 6)	32604.0	NM_009672	11737.0	Mm.269088	NM_009672	ENSMUSG00000032249	Anp32a	Anp32|I1PP2A|LANP|PHAP1|W91701|pp32	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-112316682-3	chr7	112316572	112316772	+	898.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001193305, intron 8 of 25)	intron (NM_001193305, intron 8 of 25)	-51636.0	NM_027587	100504195.0	Mm.291129	NM_027587	ENSMUSG00000030771	Micalcl	4921517J23Rik	MICAL C-terminal like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-84766451-4	chr12	84766291	84766491	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023409, intron 1 of 3)	RMER13A1|LTR|ERVK	6721.0	NM_023409	67963.0	Mm.282556	NM_023409	ENSMUSG00000021242	Npc2	2700012J19Rik|AA408070|AU045843|HE1	NPC intracellular cholesterol transporter 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30433246-1	chr7	30433146	30433346	+	659.0	f1_balb.idr	Intergenic	B1_Mur1|SINE|Alu	9971.0	NM_172142	243910.0	Mm.386878	NM_172142	ENSMUSG00000036931	Nfkbid	I-kappa-B-delta|IkappaBNS|ikB-delta	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	protein-coding	0.0481821242802239	0.0709381475303068	0.991663726665794	0.0578146166156255	0.855094210957441	0.0725923575338121	0.26858186806969	0.0588210356023439	-0.0852371505883023	0.968305643667537	1
Merged-chr10-78470220-1	chr10	78470120	78470320	+	540.0	f1_c57bl6.idr	Intergenic	Intergenic	-5272.0	NM_172134	216134.0	Mm.206159	NM_172134	ENSMUSG00000032788	Pdxk	2310036D04Rik|AA119688|C77999	pyridoxal (pyridoxine, vitamin B6) kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-21811477-4	chr14	21811360	21811560	+	827.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20101.0	NM_011695	22334.0	Mm.262327	NM_011695	ENSMUSG00000021771	Vdac2	Vdac6|mVDAC2|mVDAC6	voltage-dependent anion channel 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-73120186-4	chr14	73120090	73120290	+	965.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22320.0	NM_001170694	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-121017952-2	chr11	121017852	121018052	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21526.0	NM_009854	12516.0	Mm.4100	NM_009854	ENSMUSG00000025163	Cd7	-	CD7 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-4248468-2	chr18	4248368	4248568	+	560.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C-int|LTR|ERVK	82636.0	NM_026092	67328.0	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-50501436-3	chr9	50501338	50501538	+	746.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029639, intron 3 of 3)	intron (NM_029639, intron 3 of 3)	3367.0	NR_040714	69631.0	Mm.414996	NR_040714	ENSMUSG00000101304	Plet1os	2310014F07Rik	placenta expressed transcript 1, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4840463-4	chr16	4840389	4840589	+	751.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030192, intron 1 of 15)	L1MB7|LINE|L1	5073.0	NM_030192	78809.0	Mm.325551	NM_030192	ENSMUSG00000022518	4930562C15Rik	-	RIKEN cDNA 4930562C15 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-65784820-4	chr17	65784724	65784924	+	998.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152099, intron 2 of 20)	MTC|LTR|ERVL-MaLR	1469.0	NR_104465	70351.0	Mm.48686	NM_146081	ENSMUSG00000061950	Ppp4r1	3110001J10Rik|Pp4r1	protein phosphatase 4, regulatory subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-90227385-3	chr9	90227312	90227512	+	788.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_194334, exon 5 of 13)	exon (NM_194334, exon 5 of 13)	43357.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-22954541-2	chr11	22954441	22954641	+	886.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361661, intron 2 of 2)	intron (NM_001361661, intron 2 of 2)	-17464.0	NM_011663	22183.0	Mm.29542	NM_011663	ENSMUSG00000044068	Zrsr1	D11Ncvs75|Irlgs2|SP2|U2af1-rs1|U2afbp-rs	zinc finger (CCCH type), RNA binding motif and serine/arginine rich 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120795854-2	chr11	120795754	120795954	+	933.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026824, intron 1 of 13)	intron (NM_026824, intron 1 of 13)	541.0	NM_026824	68730.0	Mm.180622	NM_026824	ENSMUSG00000025155	Dus1l	1110032N12Rik	dihydrouridine synthase 1-like (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-44327293-4	chr10	44327182	44327382	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001314013, intron 5 of 6)	intron (NM_001314013, intron 5 of 6)	-32394.0	NR_035450	100316688.0		NR_035450	ENSMUSG00000089260	Mir1929	mir-1929|mmu-mir-1929	microRNA 1929	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80774329-4	chr7	80774155	80774355	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016721, intron 2 of 37)	MIRb|SINE|MIR	29076.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-66472622-2	chr18	66472522	66472722	+	661.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14018.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-110621717-2	chr7	110621617	110621817	+	632.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5940.0	NM_009627	11535.0	Mm.1408	NM_009627	ENSMUSG00000030790	Adm	AM	adrenomedullin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-82893691-2	chr13	82893591	82893791	+	800.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-195358.0	NR_039537	100628621.0		NR_039537	ENSMUSG00000106655	Mir3961	mmu-mir-3961	microRNA 3961	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-83732330-4	chr17	83732219	83732419	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054082, intron 3 of 16)	intron (NM_054082, intron 3 of 16)	26156.0	NM_001171052	116871.0	Mm.277668	NM_054082	ENSMUSG00000055817	Mta3	1110002J22Rik|mKIAA1266	metastasis associated 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-55471618-4	chr13	55471535	55471735	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001030296, intron 1 of 2)	CpG	6141.0	NR_105909	102465569.0		NR_105909	ENSMUSG00000098341	Mir6944	Gm27710|mmu-mir-6944	microRNA 6944	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-46574322-3	chr4	46574245	46574445	+	703.222229	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164804, intron 1 of 11)	intron (NM_001164804, intron 1 of 11)	-7905.0	NM_178893	107684.0	Mm.416311	NM_178893	ENSMUSG00000028337	Coro2a	9030208C03Rik|AI563590|IR10	coronin, actin binding protein 2A	protein-coding	1.48816581938174	0.768007557849441	0.966650334128758	1.25067181946229	0.90749812687784	1.4945375325103	1.83937600561229	0.744905530527807	0.678610954610706	0.627573978944999	0.980912176761026
Merged-chr15-101316011-4	chr15	101315918	101316118	+	948.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22806.0	NR_033803	77717.0	Mm.391998	NR_033803	ENSMUSG00000075408	6030408B16Rik	AI225877	RIKEN cDNA 6030408B16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94107362-4	chr10	94107257	94107457	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053072, intron 8 of 20)	intron (NM_053072, intron 8 of 20)	-40574.0	NM_011629	22025.0	Mm.107483	NM_011629	ENSMUSG00000005897	Nr2c1	4831444H07Rik|80.3|Eenr|TR2|Tr2-11	nuclear receptor subfamily 2, group C, member 1	protein-coding	4.4311378808599	4.01853677095839	3.57229170092605	3.6324447060342	4.49751455040083	2.21889446426372	3.50861782377064	4.58984923757874	0.0531685749482847	0.927897363069433	0.998431161219273
Merged-chr7-25286738-2	chr7	25286638	25286838	+	763.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001302811, intron 7 of 20)	intron (NM_001302811, intron 7 of 20)	4559.0	NM_027882	71722.0	Mm.28833	NM_027882	ENSMUSG00000005442	Cic	1200010B10Rik|mKIAA0306	capicua transcriptional repressor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-142814797-4	chr6	142814695	142814895	+	650.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045707, intron 2 of 6)	intron (NR_045707, intron 2 of 6)	564.0	NR_045707	665037.0	Mm.401493	NR_045707	ENSMUSG00000072683	Gm7457	EG665037	predicted gene 7457	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-121722684-4	chr11	121722561	121722761	+	975.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20234.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-24680615-2	chr1	24680515	24680715	+	942.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310483, intron 1 of 15)	Charlie1a|DNA|hAT-Charlie	1697.0	NM_001310483	68421.0	Mm.336563	NM_026719	ENSMUSG00000073725	Lmbrd1	0910001K20Rik|AV347960	LMBR1 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-78466069-2	chr10	78465969	78466169	+	593.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-1121.0	NM_172134	216134.0	Mm.206159	NM_172134	ENSMUSG00000032788	Pdxk	2310036D04Rik|AA119688|C77999	pyridoxal (pyridoxine, vitamin B6) kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118858170-2	chr9	118858070	118858270	+	756.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 9 of 13)	intron (NM_001113514, intron 9 of 13)	-68366.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	-1.27480050717774	-0.604729833679879	-1.25573295904267	-1.26493563944758	-1.27428069156472	-1.24210192204986	-1.25319678955844	-1.26328836405502	-2.6632876257018	0.439827081912762	1
Merged-chr15-41613151-3	chr15	41613049	41613249	+	859.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152565, intron 2 of 17)	intron (NR_152565, intron 2 of 17)	164046.0	NM_001358977	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-74454117-4	chr17	74454021	74454221	+	884.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033367, intron 1 of 8)	RLTR26B_MM|LTR|ERVK	4987.0	NM_001033367	268973.0	Mm.311884	NM_001033367	ENSMUSG00000039193	Nlrc4	9530011P19Rik|CLAN|CLAN1|CLANA|CLANB|CLANC|CLAND|Card12|IPAF	NLR family, CARD domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98209167-2	chr11	98209067	98209267	+	614.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026952, intron 1 of 12)	B1_Mus1|SINE|Alu	5862.0	NM_001109626	69131.0	Mm.260516	NM_026952	ENSMUSG00000003119	Cdk12	1810022J16Rik|AI646528|Crk7|Crkrs|D11Ertd752e|Pksc	cyclin-dependent kinase 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-130473197-3	chr2	130473098	130473298	+	719.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355161, intron 1 of 21)	intron (NM_001355161, intron 1 of 21)	22920.0	NM_001355161	19262.0	Mm.224246	NM_008980	ENSMUSG00000027303	Ptpra	Ptpa|Ptpalpha|Rptpalpha|Rptra|Rptralpha	protein tyrosine phosphatase, receptor type, A	protein-coding	1.91827959590602	1.77614851854177	2.08292973470114	1.1383600718907	2.18201698301115	1.78883907874155	1.38648776245189	1.92888708024589	0.22810704672414	0.832217248757488	0.998431161219273
Merged-chr1-74290420-2	chr1	74290320	74290520	+	803.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027154, intron 10 of 11)	intron (NM_027154, intron 10 of 11)	5386.0	NM_001039509	56695.0	Mm.384726	NM_019999	ENSMUSG00000026179	Pnkd	2210013N15Rik|2810403H05Rik|AI854243|Brp17|MNCb-5687|MR-1|Tahccp2	paroxysmal nonkinesiogenic dyskinesia	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-14608093-3	chr8	14608052	14608252	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172910, intron 4 of 15)	intron (NM_172910, intron 4 of 15)	-280384.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	3.10028737187386	1.42043174380491	1.90057160053956	1.32801676054175	2.99524040776967	2.67991170748827	3.77496651469994	2.99835271502709	1.83617976583777	0.0391433819923786	0.281864823391589
Merged-chr3-103280476-3	chr3	103280376	103280576	+	915.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001079830, intron 1 of 18)	CpG	1183.0	NM_053170	94093.0	Mm.195036	NM_053170	ENSMUSG00000033014	Trim33	8030451N04Rik|AI413936|Ecto|Tif1g	tripartite motif-containing 33	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-83674481-2	chr16	83674381	83674581	+	611.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13B|LTR|ERVK	-696662.0	NR_040567	75247.0	Mm.417813	NR_040567		4930553E22Rik	-	RIKEN cDNA 4930553E22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-118865204-2	chr10	118865139	118865339	+	639.0	f0_balb.idr|f1_balb.idr	intron (NM_001014390, intron 2 of 2)	intron (NM_001014390, intron 2 of 2)	3664.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-24435518-4	chr16	24435407	24435607	+	926.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 1 of 12)	intron (NM_178665, intron 1 of 12)	-12584.0	NM_001145952	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91612704-4	chr16	91612642	91612842	+	998.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6257.0	NM_001099738	246738.0	Mm.101927	NM_138664	ENSMUSG00000039763	Dnajc28	BC020175|ORF28	DnaJ heat shock protein family (Hsp40) member C28	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-95680999-1	chr13	95680899	95681099	+	556.0	f1_balb.idr	intron (NM_027711, intron 17 of 35)	intron (NM_027711, intron 17 of 35)	-15921.0	NM_010170	14064.0	Mm.440952	NM_010170	ENSMUSG00000021675	F2rl2	F730031A08|PAR3	coagulation factor II (thrombin) receptor-like 2	protein-coding	1.66951885120704	1.03732353886078	1.00823322856699	0.98480755806866	2.7181813572533	2.59418278688123	2.1092754854023	1.63100347847549	3.31767190263441	0.0059783352339727	0.0763631710873066
Merged-chr11-43575397-2	chr11	43575297	43575497	+	658.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001045530, intron 3 of 5)	intron (NM_001045530, intron 3 of 5)	26165.0	NM_008375	16204.0	Mm.142716	NM_008375	ENSMUSG00000020405	Fabp6	GT|I-15P|I-BABP|ILBP|ILBP3|Illbp	fatty acid binding protein 6, ileal (gastrotropin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133159887-4	chr4	133159786	133159986	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153423, intron 1 of 8)	intron (NM_153423, intron 1 of 8)	29253.0	NM_153423	242687.0	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-98202408-2	chr7	98202308	98202508	+	633.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2933.0	NM_001081167	272411.0	Mm.98333	NM_001081167	ENSMUSG00000074004	B3gnt6	BC039789|Core-3|Core3	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6 (core 3 synthase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-64317711-2	chr7	64317611	64317811	+	855.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172742, intron 7 of 15)	MTC|LTR|ERVL-MaLR	30041.0	NM_172742	233315.0	Mm.214959	NM_172742	ENSMUSG00000030522	Mtmr10	BB128963|C79734	myotubularin related protein 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19095678-2	chr7	19095578	19095778	+	987.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_011383, intron 1 of 2)	intron (NM_011383, intron 1 of 2)	1134.0	NM_011383	20475.0	Mm.3410	NM_011383	ENSMUSG00000040841	Six5	Dmahp|MDMAHP|TrexBF	sine oculis-related homeobox 5	protein-coding	0.591332728173555	1.08455785381452	0.640404005947764	0.456761187168859	0.83449724032819	0.973617780198275	0.464315591596407	0.890865451448988	0.487318140307433	0.762333711591433	1
Merged-chr8-13588135-2	chr8	13588035	13588235	+	691.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 10 of 23)	intron (NM_009025, intron 10 of 23)	-25674.0	NM_001080781	66501.0	Mm.46136	NM_025601	ENSMUSG00000031452	1700029H14Rik	-	RIKEN cDNA 1700029H14 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-79980949-2	chr3	79980849	79981049	+	676.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	95019.0	NM_133187	68659.0	Mm.427274	NM_133187	ENSMUSG00000027955	Fam198b	1110032E23Rik|2210419I08Rik|AV011458|Ened	family with sequence similarity 198, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83040809-4	chr6	83040656	83040856	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013586, intron 4 of 13)	intron (NM_013586, intron 4 of 13)	6532.0	NM_013586	16950.0	Mm.380433	NM_013586	ENSMUSG00000000693	Loxl3	Lor2|Loxl2	lysyl oxidase-like 3	protein-coding	4.6510672606446	4.0952139910556	5.29337823578971	4.2819769125696	4.29805973210669	3.77905648960025	3.82845380582505	4.89208501857123	-0.480126871296107	0.282069776649767	0.784607383364121
Merged-chr7-133116230-2	chr7	133116130	133116330	+	851.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009980, intron 1 of 10)	intron (NM_009980, intron 1 of 10)	7253.0	NM_009980	13017.0	Mm.246240	NM_009980	ENSMUSG00000030970	Ctbp2	AA407280|D7Ertd45e|Gtrgeo6|Ribeye	C-terminal binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3321777-4	chr19	3321674	3321874	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1527.0	NM_013495	12894.0	Mm.18522	NM_013495	ENSMUSG00000024900	Cpt1a	C730027G07|CPTI|Cpt1	carnitine palmitoyltransferase 1a, liver	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30933203-2	chr2	30933103	30933303	+	764.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-19798.0	NM_133673	30934.0	Mm.249164	NM_133673	ENSMUSG00000026848	Tor1b	2610016F05Rik|DQ1|torsinB	torsin family 1, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28284620-2	chr17	28284520	28284720	+	564.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011145, intron 2 of 7)	intron (NM_011145, intron 2 of 7)	-10998.0	NR_039557	100628577.0		NR_039557	ENSMUSG00000093061	Mir5098	mmu-mir-5098|mu-mir-5098	microRNA 5098	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-97128696-2	chr5	97128596	97128796	+	860.8333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17100.0	NM_001359913	231474.0	Mm.332505	NM_198422	ENSMUSG00000055725	Paqr3	6330415A20Rik|AY424292|RKTG	progestin and adipoQ receptor family member III	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-53989349-2	chr9	53989249	53989449	+	999.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-14048.0	NM_177769	270162.0	Mm.259791	NM_177769	ENSMUSG00000041986	Elmod1	4831417L10|AI428506|AI834991	ELMO/CED-12 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-97083029-4	chr7	97082944	97083144	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162477, intron 1 of 9)	intron (NM_001162477, intron 1 of 9)	1293.0	NM_010248	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55230619-2	chr19	55230519	55230719	+	983.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081076, intron 5 of 20)	intron (NM_001081076, intron 5 of 20)	10617.0	NM_001081076	73707.0	Mm.489987	NM_001081076	ENSMUSG00000055523	Gucy2g	2410077I05Rik|GC-G	guanylate cyclase 2g	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-6373127-4	chr4	6373035	6373235	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001098227, intron 1 of 8)	intron (NM_001098227, intron 1 of 8)	7455.0	NM_001098227	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	4.99157036938233	5.4725747657303	4.01215913134272	4.97552727020444	4.5678492916068	4.79858709118864	3.59650987460712	5.29730130381394	-0.314385982172463	0.466645230792506	0.923185030072851
Merged-chr19-43723624-4	chr19	43723533	43723733	+	968.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053103, intron 9 of 12)	intron (NM_053103, intron 9 of 12)	29367.0	NM_144874	226139.0	Mm.248237	NM_144874	ENSMUSG00000040018	Cox15	2900026G05Rik	cytochrome c oxidase assembly protein 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-96064592-1	chr11	96064492	96064692	+	570.0	f0_balb.idr	intron (NM_172300, intron 1 of 6)	intron (NM_172300, intron 1 of 6)	772.0	NM_172300	268470.0	Mm.38802	NM_172300	ENSMUSG00000014349	Ube2z	AW049199|C030047H17Rik|D11Moh35	ubiquitin-conjugating enzyme E2Z	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-18649008-4	chr2	18648846	18649046	+	970.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23516.0	NM_147778	12238.0	Mm.249586	NM_147778	ENSMUSG00000051154	Commd3	AW550818|Bup|D2Ertd542e	COMM domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-122870120-4	chr6	122870028	122870228	+	983.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4429.0	NM_026267	67602.0	Mm.288114	NM_026267	ENSMUSG00000030327	Necap1	1200016B17Rik|AI747569|mFLJ00061	NECAP endocytosis associated 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-113637968-2	chr8	113637914	113638114	+	866.333374	f1_balb.idr|f1_c57bl6.idr	exon (NM_173015, exon 2 of 5)	exon (NM_173015, exon 2 of 5)	2215.0	NM_173015	270096.0	Mm.74689	NM_173015	ENSMUSG00000078908	Mon1b	5031407H10|5033413H12Rik	MON1 homolog B, secretory traffciking associated	protein-coding	-0.0707056013303019	0.953167262967581	0.582337478557706	-0.0615438791408478	0.10009694833143	-0.0475029542224821	-0.0545326127815141	-0.0605870674492966	-3.34130838465147	0.128308950322604	1
Merged-chr8-70844695-4	chr8	70844526	70844726	+	917.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_032397, intron 9 of 9)	intron (NM_032397, intron 9 of 9)	-4906.0	NM_027560	70807.0	Mm.24215	NM_027560	ENSMUSG00000002910	Arrdc2	4632416I05Rik|Ilad1	arrestin domain containing 2	protein-coding	0.274261175170408	0.905068318470877	1.21160906368906	0.288869659788952	0.276460016105343	1.39788606528318	0.29991954899588	0.29038403662403	-0.22425105387991	0.90756346343217	0.998431161219273
Merged-chr18-35573537-3	chr18	35573431	35573631	+	706.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010771, intron 2 of 14)	intron (NM_010771, intron 2 of 14)	11373.0	NM_010771	17184.0	Mm.215034	NM_010771	ENSMUSG00000037236	Matr3	1110061A14Rik|2810017I02Rik|AI841759|AW555618|D030046F20Rik|mKIAA0723	matrin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166576351-2	chr2	166576251	166576451	+	603.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 31 of 39)	intron (NM_177782, intron 31 of 39)	11829.0	NR_152154	433503.0	Mm.491336	NR_152154		Gm29679	-	predicted gene, 29679	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-72594119-2	chr14	72594025	72594225	+	852.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_207636, intron 4 of 25)	intron (NM_207636, intron 4 of 25)	115878.0	NM_207636	319448.0	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	1.58137113343052	1.63900591599479	1.58364629201745	1.66769372931559	1.33925018423365	1.29125490553437	2.30329855408147	1.22640258915274	0.087283249757285	0.93747639174765	0.998431161219273
Merged-chr7-66110025-4	chr7	66109916	66110116	+	893.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081163, exon 1 of 3)	exon (NM_001081163, exon 1 of 3)	501.0	NM_001081163	269941.0	Mm.333916	NM_001081163	ENSMUSG00000032640	Chsy1	mKIAA0990	chondroitin sulfate synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-23454138-3	chr13	23454045	23454245	+	917.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11756.0	NM_013483	12231.0	Mm.1420	NM_013483	ENSMUSG00000000706	Btn1a1	Btn	butyrophilin, subfamily 1, member A1	protein-coding	-0.885343988398316	-0.873197811915141	-0.879568534556306	-0.464008891048743	-0.884809499207366	-0.870535133016439	-0.878945546113603	-0.458408536970068	0.0285539633070526	0.992673327504828	1
Merged-chr4-11480199-4	chr4	11480087	11480287	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5771.0	NM_001081183	66185.0	Mm.331487	NM_001081183	ENSMUSG00000040720	Virma	1110037F02Rik|4930422M05Rik|Kiaa1429|mKIAA1429	vir like m6A methyltransferase associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-43448591-2	chr13	43448491	43448691	+	874.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019930, intron 2 of 13)	PB1D7|SINE|Alu	32382.0	NM_019930	56705.0	Mm.148781	NM_019930	ENSMUSG00000038546	Ranbp9	IBAP-1|Ibap1|RanBPM	RAN binding protein 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140390006-2	chr5	140389906	140390106	+	740.833313	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172277)	promoter-TSS (NM_172277)	-698.0	NM_172277	231834.0	Mm.27098	NM_172277	ENSMUSG00000029560	Snx8	B130023O14Rik	sorting nexin 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-95657408-4	chr1	95657291	95657491	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159745, intron 2 of 3)	intron (NM_001159745, intron 2 of 3)	10203.0	NM_009183	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-17064018-4	chr17	17063917	17064117	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001005358)	promoter-TSS (NM_001005358)	-86.0	NM_001005358	449000.0	Mm.483718	NM_001005358	ENSMUSG00000096696	Zfp960	-	zinc finger protein 960	protein-coding	3.56694057164854	4.65829576018945	4.35363615884597	3.41008042790027	5.02213611080467	5.04206553342259	5.1063750488577	4.31150291466027	1.03773400138682	0.014755404297418	0.143464619741022
Merged-chr6-22423693-3	chr6	22423549	22423749	+	974.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-67568.0	NM_138587	27999.0	Mm.490307	NM_138587	ENSMUSG00000029672	Fam3c	D6Wsu176e|Ilei	family with sequence similarity 3, member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-62605139-2	chr10	62605039	62605239	+	659.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6-int|LTR|ERVK	-2841.0	NM_019553	56200.0	Mm.413275	NM_019553	ENSMUSG00000020075	Ddx21	AI255159|AL022742|D10Ertd645e|D10Wsu42e	DEAD (Asp-Glu-Ala-Asp) box polypeptide 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95995607-2	chr3	95995507	95995707	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_023320, exon 2 of 6)	exon (NM_023320, exon 2 of 6)	232.0	NM_023320	67220.0	Mm.458147	NM_023320	ENSMUSG00000015745	Plekho1	2810052M02Rik|CKIP-1|Ckip1|JZA-20|Jza2	pleckstrin homology domain containing, family O member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-117194988-3	chr2	117194911	117195111	+	816.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9884.0	NR_030440	732489.0		NR_030440	ENSMUSG00000076376	Mir674	Mirn674|mir-674|mmu-mir-674	microRNA 674	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-149415978-3	chr4	149415875	149416075	+	795.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022022, intron 1 of 26)	intron (NM_022022, intron 1 of 26)	10656.0	NM_022022	63958.0	Mm.415260	NM_022022	ENSMUSG00000028960	Ube4b	4930551I19Rik|4933406G05Rik|AU014668|D4Bwg0973e|UFD2|UFD2a|Ufd2p|mKIAA0684	ubiquitination factor E4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-139334858-1	chr6	139334758	139334958	+	576.0	f1_balb.idr	Intergenic	Lx2|LINE|L1	-12282.0	NR_045149	70962.0	Mm.410833	NR_045149	ENSMUSG00000108128	4922502N22Rik	-	RIKEN cDNA 4922502N22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-33822655-4	chr5	33822553	33822753	+	757.616699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20459.0	NM_175231	107823.0	Mm.19892	NM_175231	ENSMUSG00000057406	Nsd2	5830445G22Rik|9430010A17Rik|AW555663|C130020C13Rik|D030027O06Rik|D930023B08Rik|MMSET|Whsc1|Whsc1l|mKIAA1090	nuclear receptor binding SET domain protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115638049-2	chr11	115637949	115638149	+	794.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-9754.0	NM_001252395	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152604433-3	chr1	152604333	152604533	+	940.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346119, intron 2 of 17)	intron (NM_001346119, intron 2 of 17)	20784.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-44435928-3	chr11	44435833	44436033	+	591.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	34615.0	NM_024475	79560.0	Mm.338784	NM_024475	ENSMUSG00000041231	Ublcp1	4930527B16Rik|8430435I17Rik|BC002236	ubiquitin-like domain containing CTD phosphatase 1	protein-coding	0.501880452831296	0.576745606523084	0.366340103325783	1.10943154534502	0.506652217278992	0.582160327308572	0.368081052628767	1.11837602729961	0.0318720488720279	0.984858195301972	1
Merged-chr8-84913443-7	chr8	84913152	84913352	+	937.285706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_103491)	promoter-TSS (NR_103491)	-83.0	NR_103491	100503676.0	Mm.437155	NR_103491	ENSMUSG00000003812	Gm38426	-	predicted gene, 38426	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-4164997-3	chr12	4164885	4165085	+	710.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159537, intron 2 of 21)	intron (NM_001159537, intron 2 of 21)	30832.0	NM_138305	104111.0	Mm.489807	NM_138305	ENSMUSG00000020654	Adcy3	AC3|mKIAA0511	adenylate cyclase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-18468247-4	chr9	18468147	18468347	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028160, intron 4 of 7)	intron (NM_028160, intron 4 of 7)	5312.0	NM_028935	72230.0	Mm.289689	NM_028160	ENSMUSG00000074500	Zfp558	1700007A21Rik|4932704I17Rik|Zfp558-ps	zinc finger protein 558	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-24076257-3	chr11	24076168	24076368	+	823.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1788.0	NM_016707	14025.0	Mm.53687	NM_016707	ENSMUSG00000000861	Bcl11a	2810047E18Rik|BCL-11A|Ctip1|D930021L15Rik|Evi9|Evi9a|Evi9b|Evi9c|mKIAA1809	B cell CLL/lymphoma 11A (zinc finger protein)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-43862353-2	chr5	43862253	43862453	+	805.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6456.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-80267114-4	chr2	80267016	80267216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25354.0	NM_177256	320769.0	Mm.60992	NM_177256	ENSMUSG00000050114	Prdx6b	1-cysPrx-P1|4930414C22Rik|Aop2-rs1|Prdx5-rs1|Prdx6-ps1|Prdx6-rs1|Prdx6-rs1-ps	peroxiredoxin 6B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-145112600-4	chr7	145112497	145112697	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	95522.0	NR_033626	100040049.0	Mm.102235	NR_033626	ENSMUSG00000109305	1810010D01Rik	Gm2572	RIKEN cDNA 1810010D01 gene	ncRNA	4.9928889629464	4.86259500995165	4.56943164067685	5.24858345122724	4.64602036631912	4.75032649805808	3.37195271453874	5.35062513751009	-0.292007647626926	0.483127123656444	0.930924929812101
Merged-chr15-73044636-3	chr15	73044503	73044703	+	724.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029640, intron 3 of 21)	intron (NM_029640, intron 3 of 21)	11209.0	NM_029640	76510.0	Mm.158902	NM_029640	ENSMUSG00000047921	Trappc9	1810044A24Rik|2900005P22Rik|4632408O18Rik|Ibp|Nibp|TRS130|mKIAA1882	trafficking protein particle complex 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-81942666-2	chr13	81942566	81942766	+	593.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	159419.0	NM_007684	12626.0	Mm.12481	NM_007684	ENSMUSG00000021537	Cetn3	MmCEN3	centrin 3	protein-coding	-1.02543723553113	-1.26179608770366	-1.27181898384341	-1.28005208915589	-1.28898057388941	-1.25962408429867	-1.269550019853	-0.980232207918307	0.177854362415921	0.958931262152103	1
Merged-chr17-88176159-1	chr17	88176059	88176259	+	740.0	f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	50647.0	NM_001190356	225058.0	Mm.312053	NM_001190356		Gm4832	EG225058	predicted gene 4832	protein-coding	3.36275004127088	2.98851364743077	4.45262792015939	3.90731514977487	2.77690924069356	2.70739688261359	3.87205508610285	2.34401380751064	-1.11800703396883	0.0829374381279952	0.440811387212713
Merged-chr19-26605054-4	chr19	26604944	26605144	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011416)	promoter-TSS (NM_011416)	-116.0	NM_011416	67155.0	Mm.491146	NM_011416	ENSMUSG00000024921	Smarca2	2610209L14Rik|SNF2alpha|Snf2l2|brahma|brm	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65188792-3	chr9	65188690	65188890	+	868.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25900.0	NM_177460	214424.0	Mm.31129	NM_177460	ENSMUSG00000032392	Parp16	ARTD15|BC055447|C79952|PARP-16	poly (ADP-ribose) polymerase family, member 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46149929-1	chr8	46149829	46150029	+	590.0	f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	-13722.0	NM_025747	66756.0	Mm.133623	NM_025747	ENSMUSG00000031631	Cfap97	1110068E21Rik|4933411K20Rik|AW049273|Kiaa1430	cilia and flagella associated protein 97	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80305086-4	chr10	80304976	80305176	+	668.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011789, intron 5 of 13)	CpG-1275	3256.0	NM_011789	23805.0	Mm.57247	NM_011789	ENSMUSG00000020135	Apc2	AI852447|APCL|R75424	adenomatosis polyposis coli 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10306741-2	chr19	10306641	10306841	+	602.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER5A|DNA|hAT-Charlie	-1864.0	NM_198114	269060.0	Mm.329718	NM_198114	ENSMUSG00000035735	Dagla	Nsddr	diacylglycerol lipase, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-97249167-3	chr13	97249062	97249262	+	808.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007930, intron 2 of 2)	intron (NM_007930, intron 2 of 2)	8057.0	NM_007930	13803.0	Mm.241073	NM_007930	ENSMUSG00000041773	Enc1	Nrpb|PIG10	ectodermal-neural cortex 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-92345212-4	chr5	92345130	92345330	+	897.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310664, intron 2 of 10)	intron (NM_001310664, intron 2 of 10)	3659.0	NM_021274	15945.0	Mm.877	NM_021274	ENSMUSG00000034855	Cxcl10	C7|CRG-2|INP10|IP-10|IP10|Ifi10|Scyb10|gIP-10|mob-1	chemokine (C-X-C motif) ligand 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-23844073-3	chr17	23843979	23844179	+	997.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027644)	promoter-TSS (NM_027644)	77.0	NM_027644	71003.0	Mm.328839	NM_027644	ENSMUSG00000024114	Prss41	4931440B09Rik|Tessp-1|Tessp1	protease, serine 41	protein-coding	2.93783178117582	2.29627830336479	3.52222906617321	3.09868111908317	3.47458440603965	2.98430886813284	3.39286095634909	3.91224055298388	0.730874108715291	0.236216393202742	0.732963177322369
Merged-chr4-62697625-3	chr4	62697527	62697727	+	838.638916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134257, intron 12 of 15)	intron (NM_134257, intron 12 of 15)	23653.0	NM_001310706	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-51693021-2	chr12	51692921	51693121	+	871.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001329698, intron 1 of 5)	B1_Mm|SINE|Alu	-1107.0	NM_052973	94186.0	Mm.65979	NM_052973	ENSMUSG00000020954	Strn3	Gs2na|SG2NA	striatin, calmodulin binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-44432109-2	chr13	44432008	44432208	+	637.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7619.0	NR_045489	69491.0	Mm.392410	NR_045489	ENSMUSG00000098144	1700029N11Rik	-	RIKEN cDNA 1700029N11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-42141769-4	chr9	42141666	42141866	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17469.0	NM_011436	20660.0	Mm.121920	NM_011436	ENSMUSG00000049313	Sorl1	2900010L19Rik|AI596264|AW261561|LR11|SorLA|gp250|mSorLA	sortilin-related receptor, LDLR class A repeats-containing	protein-coding	1.63258784008462	2.06722613625266	1.99385211059324	1.27400423382254	1.52649603976727	1.10665214163332	1.78342393025502	1.8426608399749	-0.566271848553794	0.610729244148186	0.975183586809945
Merged-chr2-61512253-4	chr2	61512160	61512360	+	951.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	-66326.0	NM_011529	21353.0	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-32340654-3	chr12	32340581	32340781	+	751.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38108.0	NM_001162903	72123.0	Mm.341352	NM_028111	ENSMUSG00000090946	Ccdc71l	2010109K11Rik|AV375874	coiled-coil domain containing 71 like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120797313-2	chr11	120797213	120797413	+	867.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026824)	promoter-TSS (NM_026824)	-918.0	NM_026824	68730.0	Mm.180622	NM_026824	ENSMUSG00000025155	Dus1l	1110032N12Rik	dihydrouridine synthase 1-like (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-62507021-4	chr3	62506907	62507107	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028136)	promoter-TSS (NM_028136)	-19.0	NM_028136	72162.0	Mm.224233	NM_028136	ENSMUSG00000027770	Dhx36	2810407E23Rik|AI452301|AU022184|Ddx36|mKIAA1488	DEAH (Asp-Glu-Ala-His) box polypeptide 36	protein-coding	4.25427490335593	5.42615693108132	4.15219604618753	5.14834490107152	4.24143822577445	5.31065578971512	2.66622878328604	3.59525709691978	-0.7083363661109	0.191649818514837	0.670022180678953
Merged-chr4-40297041-2	chr4	40296941	40297141	+	572.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-16191.0	NR_040663	75819.0	Mm.399244	NR_040663	ENSMUSG00000087137	4930509K18Rik	-	RIKEN cDNA 4930509K18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-99711740-2	chr10	99711640	99711840	+	705.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47918.0	NM_027945	71832.0	Mm.483162	NM_027945	ENSMUSG00000046934	Csl	1700007H16Rik	citrate synthase like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-5542291-4	chr11	5542180	5542380	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134033)	promoter-TSS (NM_134033)	-63.0	NM_134033	104479.0	Mm.210403	NM_134033	ENSMUSG00000020482	Ccdc117	1110004K02Rik|1700026O03Rik|AU018638|AU042822|AV173073|BC018601	coiled-coil domain containing 117	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167681738-2	chr2	167681638	167681838	+	784.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7177.0	NM_009883	12608.0	Mm.439656	NM_009883	ENSMUSG00000056501	Cebpb	C/EBPbeta|CRP2|IL-6DBP|LAP|LIP|NF-IL6|NF-M|Nfil6	CCAAT/enhancer binding protein (C/EBP), beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3702357-2	chr19	3702257	3702457	+	566.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20C1_MM|LTR|ERVK	-5936.0	NM_001358256	72056.0	Mm.23780	NM_028077	ENSMUSG00000035372	1810055G02Rik	AI256204	RIKEN cDNA 1810055G02 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-55213112-2	chr13	55213012	55213212	+	776.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008739, intron 1 of 22)	intron (NM_008739, intron 1 of 22)	3330.0	NM_008739	18193.0	Mm.168965	NM_008739	ENSMUSG00000021488	Nsd1	AI528500|KMT3B	nuclear receptor-binding SET-domain protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-81801280-4	chr13	81801176	81801376	+	793.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18029.0	NM_007684	12626.0	Mm.12481	NM_007684	ENSMUSG00000021537	Cetn3	MmCEN3	centrin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-5605077-4	chr13	5604975	5605175	+	965.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	253017.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-113013496-4	chr13	113013330	113013530	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19562.0	NM_001037914	622408.0	Mm.360976	NM_001037914	ENSMUSG00000074651	Mcidas	EG622408|Gm6320|Idas|Mci|Mcin	multiciliate differentiation and DNA synthesis associated cell cycle protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-124666139-2	chr2	124666039	124666239	+	874.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172537, exon 17 of 17)	3' UTR (NM_172537, exon 17 of 17)	12558.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-108956668-2	chr8	108956585	108956785	+	643.0	f0_c57.idr|f1_balb.idr	exon (NM_007496, exon 10 of 10)	exon (NM_007496, exon 10 of 10)	19825.0	NR_037295	100526511.0		NR_037295	ENSMUSG00000093241	Mir3108	mir-3108|mmu-mir-3108	microRNA 3108	ncRNA	0.537120702735649	0.577601503583082	1.65392732100735	1.07453672787515	0.539728656372987	0.819952854997081	0.789897751376825	1.60235736768736	-0.156846639547275	0.921454758342342	0.998431161219273
Merged-chr7-55869407-4	chr7	55869305	55869505	+	953.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164661, intron 2 of 31)	ORR1B2|LTR|ERVL-MaLR	27334.0	NM_001164661	20430.0	Mm.37249	NM_011370	ENSMUSG00000030447	Cyfip1	E030028J09Rik|P140SRA-1|P140sra1|Shyc|Sra-1|Sra1|l(7)1Rl|l71Rl|l7Rl1|mKIAA0068|pl-1	cytoplasmic FMR1 interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-6628741-4	chr11	6628631	6628831	+	833.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2664.0	NM_134011	21379.0	Mm.247761	NM_134011	ENSMUSG00000000384	Tbrg4	2310042P22Rik|AA120735|AA408001|AI527316|Cpr2|R74877|Tb-12|mKIAA0948	transforming growth factor beta regulated gene 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-83812165-4	chr3	83812057	83812257	+	882.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29451.0	NM_011905	24088.0	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-80933114-4	chr13	80933011	80933211	+	997.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-7292.0	NR_103550	71416.0	Mm.415500	NR_103550		5430425K12Rik	-	RIKEN cDNA 5430425K12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100352837-1	chr11	100352737	100352937	+	584.0	f1_balb.idr	intron (NM_001359052, intron 6 of 12)	intron (NM_001359052, intron 6 of 12)	3291.0	NM_001359052	15114.0	Mm.281700	NM_010404	ENSMUSG00000006930	Hap1	HAP-1	huntingtin-associated protein 1	protein-coding	-1.7024385483431	-1.81249224917775	-1.82134771053534	-1.82862185015837	-1.70038292649591	-1.81057323376012	-1.81934302819017	-1.82731978264371	0.0376840119903864	0.991491645451152	1
Merged-chr3-52000230-4	chr3	52000092	52000292	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	104814.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-33043008-3	chr19	33042909	33043109	+	726.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA5A|LINE|L1	-114103.0	NR_039552	100628575.0		NR_039552	ENSMUSG00000106278	Mir3970	mmu-mir-3970|mu-mir-3970	microRNA 3970	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-100831187-4	chr12	100831080	100831280	+	938.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361023, intron 2 of 11)	intron (NM_001361023, intron 2 of 11)	52123.0	NM_145448	217830.0	Mm.218590	NM_145448	ENSMUSG00000021185	Dglucy	9030617O03Rik	D-glutamate cyclase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-65326358-4	chr5	65326255	65326455	+	994.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011258, intron 1 of 24)	intron (NM_011258, intron 1 of 24)	9284.0	NM_011258	19687.0	Mm.148877	NM_011258	ENSMUSG00000029191	Rfc1	140kDa|Alp145|RFC140|Recc1	replication factor C (activator 1) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-103786402-2	chr3	103786302	103786502	+	697.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301304, intron 1 of 15)	intron (NM_001301304, intron 1 of 15)	4873.0	NM_001301306	15257.0	Mm.20827	NM_010432	ENSMUSG00000008730	Hipk1	1110062K04Rik|Myak	homeodomain interacting protein kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-59847762-4	chr13	59847661	59847861	+	935.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MERVL_2A-int|LTR|ERVL	-24614.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-75025564-4	chr14	75025473	75025673	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198642, intron 1 of 13)	intron (NM_198642, intron 1 of 13)	9546.0	NM_198642	271221.0	Mm.320280	NM_198642	ENSMUSG00000034959	Rubcnl	5031414D18Rik|Gm744|Gm911|Kiaa0226l	RUN and cysteine rich domain containing beclin 1 interacting protein like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-105967770-4	chr1	105967657	105967857	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	22525.0	NR_151625	635504.0	Mm.359717	NR_151625		Gm7160	EG635504	predicted gene 7160	ncRNA	5.36424442208895	4.60374904270771	4.45303720966154	6.030772755472	5.40100663573571	4.74807852261274	4.36673358117597	5.18009059877267	-0.333491734099746	0.406772247510306	0.891678457788425
Merged-chr17-64559238-3	chr17	64559135	64559335	+	701.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3645.0	NR_045899	100043582.0	Mm.11170	NR_045899	ENSMUSG00000073377	AU016765	-	expressed sequence AU016765	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44446726-2	chr9	44446626	44446826	+	703.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-5858.0	NM_001033469	382074.0	Mm.335103	NM_001033469	ENSMUSG00000074397	Foxr1	Foxn5|Gm1115	forkhead box R1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-119532399-2	chr1	119532299	119532499	+	819.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_126486, intron 3 of 3)	intron (NR_126486, intron 3 of 3)	3766.0	NR_126486	320069.0	Mm.406320	NR_126486	ENSMUSG00000101731	3830432H09Rik	-	RIKEN cDNA 3830432H09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-25541564-4	chr9	25541478	25541678	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 2 of 7)	RLTR53_Mm|LTR|ERVK	59981.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-136211870-2	chr5	136211770	136211970	+	713.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12916.0	NM_025774	66801.0	Mm.425295	NM_025774	ENSMUSG00000039737	Prkrip1	8430424D23Rik|C114	Prkr interacting protein 1 (IL11 inducible)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-50887911-2	chr15	50887811	50888011	+	960.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_032000, intron 1 of 5)	intron (NM_032000, intron 1 of 5)	1138.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	1.0634351546016	0.663946704105675	0.652051061633341	0.834015082486703	1.37597646085752	0.666604076053805	1.61793042450477	1.36764080511078	2.29688147305571	0.134751134426573	0.57317801140984
Merged-chr9-62811830-6	chr9	62811731	62811931	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010193)	promoter-TSS (NM_010193)	-183.0	NM_010193	14155.0	Mm.24069	NM_010193	ENSMUSG00000032244	Fem1b	mKIAA0396	feminization 1 homolog b (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-9544111-2	chr1	9544011	9544211	+	768.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F1|SINE|Alu	-1297.0	NM_021511	59014.0	Mm.29061	NM_021511	ENSMUSG00000061024	Rrs1	5730466A07Rik|AA415037|D1Ertd701e|Rrr	ribosome biogenesis regulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-36182549-2	chr17	36182445	36182645	+	697.166626	f0_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	3768.0	NR_033619	625785.0	Mm.390996	NR_033619		Gm6623	EG625785	akirin 1 pseudogene	pseudo	2.20813303128918	3.25654831208374	2.52715292569927	3.05180569664956	1.52501432431364	1.18172688388906	1.14236945127671	1.38649923825984	-4.05193593478503	0.00031894418926343	0.00768412125056753
Merged-chr15-38468461-4	chr15	38468343	38468543	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22104.0	NR_105916	102465574.0		NR_105916	ENSMUSG00000099110	Mir6951	Gm27765|mmu-mir-6951	microRNA 6951	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-122562683-3	chr6	122562588	122562788	+	800.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009645, exon 5 of 5)	3' UTR (NM_009645, exon 5 of 5)	8879.0	NM_009645	11628.0	Mm.391503	NM_009645	ENSMUSG00000040627	Aicda	Aid|Arp2	activation-induced cytidine deaminase	protein-coding	2.49946267518513	1.47164188539752	3.84153990125586	2.39645887539251	3.10899881293335	2.42987512063306	1.72381336799929	3.51174996318239	0.0256710557683328	0.976923753033881	0.998431161219273
Merged-chr11-69366630-4	chr11	69366532	69366732	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146019, intron 1 of 39)	intron (NM_146019, intron 1 of 39)	2794.0	NM_146019	216848.0	Mm.178246	NM_146019	ENSMUSG00000018474	Chd3	2600010P09Rik|AF020312|Chd7|Prp7|Prp9-1	chromodomain helicase DNA binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-88666556-4	chr8	88666461	88666661	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145857, intron 4 of 12)	intron (NM_145857, intron 4 of 12)	19214.0	NM_145857	257632.0	Mm.222633	NM_145857	ENSMUSG00000055994	Nod2	ACUG|BLAU|CD|Card15|F830032C23Rik|IBD1|Nlrc2	nucleotide-binding oligomerization domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46698353-4	chr19	46698258	46698458	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025563, intron 1 of 4)	intron (NM_025563, intron 1 of 4)	8452.0	NM_025563	66439.0	Mm.87163	NM_025563	ENSMUSG00000062376	Borcs7	2010012O05Rik|4930569L17Rik|AI413851|AI467257	BLOC-1 related complex subunit 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-127239062-2	chr6	127238962	127239162	+	606.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	68905.0	NR_073373	232386.0	Mm.257367	NR_073373	ENSMUSG00000107153	Gm38404	D130058E03	predicted gene, 38404	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-138683231-4	chr5	138683161	138683361	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60402.0	NM_183025	243308.0	Mm.36612	NM_183025	ENSMUSG00000056014	A430033K04Rik	C86988	RIKEN cDNA A430033K04 gene	protein-coding	6.27456390692201	5.86478995126753	5.10861735845231	6.21561095665929	6.08269176253811	6.13400063811427	5.18357705685971	6.00049993109333	-0.0467112861247451	0.875896527467862	0.998431161219273
Merged-chr13-9184100-2	chr13	9184000	9184200	+	745.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR27|LTR|ERVK	90219.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-103375901-2	chr15	103375801	103376001	+	970.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9110.0	NM_001314041	16402.0	Mm.16234	NM_010577	ENSMUSG00000000555	Itga5	Cd49e|Fnra|VLA5	integrin alpha 5 (fibronectin receptor alpha)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-148752488-4	chr2	148752372	148752572	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177655, intron 2 of 3)	intron (NM_177655, intron 2 of 3)	2111.0	NM_177655	228756.0	Mm.189390	NM_177655	ENSMUSG00000055177	Cstl1	RCET1|RCET2|RCET3	cystatin-like 1	protein-coding	4.19673211562621	3.43596281620212	3.5183013740347	4.05994711931429	4.18577291122609	3.21449583857948	4.08214094966755	4.75758822481083	0.443477912937548	0.376139234985454	0.869206190553827
Merged-chr8-105270523-2	chr8	105270423	105270623	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001256044, intron 1 of 11)	intron (NM_001256044, intron 1 of 11)	722.0	NM_001256044	26386.0	Mm.89204	NM_011939	ENSMUSG00000033249	Hsf4	HSF 4|HSTF 4|HSTF4|ldis1|mHSF4	heat shock transcription factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-137751821-4	chr1	137751686	137751886	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-214669.0	NR_029795	735252.0		NR_029795	ENSMUSG00000065565	Mir181a-1	Mirn181a-1|Mirn213|miR-213|mir-181a-1|mmu-mir-213	microRNA 181a-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-121170823-2	chr3	121170723	121170923	+	568.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028456, intron 1 of 4)	B3|SINE|B2	872.0	NM_028456	66568.0	Mm.263163	NM_025637	ENSMUSG00000028133	Rwdd3	2510027J23Rik|3110037C01Rik|AI035684|AI662458|Rsume|X2CR1	RWD domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-33185199-4	chr14	33185113	33185313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146022)	promoter-TSS (NM_001146022)	-147.0	NM_001146022	545030.0	Mm.318345	NM_001146022	ENSMUSG00000051506	Wdfy4	Gm18810	WD repeat and FYVE domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-46108328-1	chr10	46108228	46108428	+	806.5	f0_balb.idr	Intergenic	MER5A1|DNA|hAT-Charlie	-136420.0	NR_028274	100302593.0		NR_028274	ENSMUSG00000095118	Snord14d	Gm23710	small nucleolar RNA, C/D box 14D	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-178506230-4	chr2	178506121	178506321	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	75706.0	NM_198656	381409.0	Mm.330860	NM_198656	ENSMUSG00000039155	Cdh26	Gm1010	cadherin-like 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-3930202-4	chr11	3930109	3930309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001130458, intron 2 of 9)	intron (NM_001130458, intron 2 of 9)	1752.0	NM_001130459	21452.0	Mm.20948	NM_015749	ENSMUSG00000020432	Tcn2	AW208754|Tcn-2	transcobalamin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-61986176-4	chr15	61986076	61986276	+	945.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177353, intron 1 of 2)	CpG	835.0	NM_001177352	17869.0	Mm.2444	NM_010849	ENSMUSG00000022346	Myc	AU016757|Myc2|Niard|Nird|bHLHe39	myelocytomatosis oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167250900-3	chr2	167250819	167251019	+	808.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10382.0	NM_008968	19223.0	Mm.2339	NM_008968	ENSMUSG00000017969	Ptgis	Cyp8|Cyp8a1|Pgis	prostaglandin I2 (prostacyclin) synthase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-84114311-4	chr12	84114204	84114404	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346528)	promoter-TSS (NM_001346528)	-24.0	NM_028821	105000.0	Mm.101525	NM_028821	ENSMUSG00000042523	Dnal1	1700010H15Rik|AW121714|Dnalc1|E330027P08Rik	dynein, axonemal, light chain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-100422628-3	chr3	100422523	100422723	+	905.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3782.0	NR_040543	73806.0	Mm.396549	NR_040543	ENSMUSG00000086923	4930406D18Rik	-	RIKEN cDNA 4930406D18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46686941-4	chr8	46686826	46687026	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M6|LINE|L1	52589.0	NR_045750	100503498.0	Mm.187358	NR_045750	ENSMUSG00000097534	Gm16675	-	predicted gene, 16675	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-152179317-2	chr4	152179217	152179417	+	892.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133348, intron 1 of 8)	intron (NM_133348, intron 1 of 8)	1217.0	NM_133348	70025.0	Mm.296191	NM_133348	ENSMUSG00000028937	Acot7	2410041A17Rik|Ach1|Act|Bach|CTE-IIa|Cte-II|Lach1	acyl-CoA thioesterase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80321138-4	chr10	80321090	80321290	+	945.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025521)	promoter-TSS (NM_025521)	-642.0	NM_025521	66374.0	Mm.383824	NM_025521	ENSMUSG00000020133	2310011J03Rik	AI452186|AW545358	RIKEN cDNA 2310011J03 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-122191199-2	chr3	122191099	122191299	+	657.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54358.0	NM_008129	14630.0	Mm.292676	NM_008129	ENSMUSG00000028124	Gclm	AI649393|Gcmc|Glclr	glutamate-cysteine ligase, modifier subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118846482-2	chr9	118846382	118846582	+	878.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 8 of 13)	intron (NM_001113514, intron 8 of 13)	-80054.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-98189113-4	chr4	98189003	98189203	+	806.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	194162.0	NM_053157	94043.0	Mm.331719	NM_053157	ENSMUSG00000028563	Tm2d1	2310026L18Rik|AA990549|Bbp	TM2 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-34514892-2	chr5	34514792	34514992	+	803.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_139064)	promoter-TSS (NM_139064)	-913.0	NM_139064	231130.0	Mm.28615	NM_139064	ENSMUSG00000059866	Tnip2	1810020H16Rik|ABIN-2|AI428870	TNFAIP3 interacting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-152134687-3	chr4	152134577	152134777	+	652.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207689, intron 2 of 9)	intron (NM_207689, intron 2 of 9)	1648.0	NM_207689	56226.0	Mm.264215	NM_019585	ENSMUSG00000028943	Espn	je	espin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-31221295-3	chr9	31221126	31221326	+	671.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-9378.0	NM_001102456	11804.0	Mm.19133	NM_009691	ENSMUSG00000031996	Aplp2	AI790698|APLP-2|CDEBP	amyloid beta (A4) precursor-like protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-86875017-2	chr4	86874902	86875102	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290543, intron 1 of 5)	intron (NM_001290543, intron 1 of 5)	588.0	NM_139306	230379.0	Mm.45019	NM_139306	ENSMUSG00000038007	Acer2	2410116I05Rik|Asah3l|CRG-L1|maCER2	alkaline ceramidase 2	protein-coding	1.5718754514842	0.87865614254217	2.40536981181674	1.41308614714539	1.68952764462455	1.53017303079043	0.863161160089844	0.845649890240415	-1.24849209372162	0.349810634576032	0.850386723313101
Merged-chr6-117917725-4	chr6	117917622	117917822	+	910.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166431, intron 2 of 2)	intron (NM_001166431, intron 2 of 2)	428.0	NM_001166427	98758.0	Mm.422979	NM_133834	ENSMUSG00000042079	Hnrnpf	4833420I20Rik|AA407306|Hnrpf	heterogeneous nuclear ribonucleoprotein F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10829677-2	chr19	10829577	10829777	+	735.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009852, intron 1 of 12)	intron (NM_009852, intron 1 of 12)	381.0	NM_001037801	12511.0	Mm.290897	NM_009852	ENSMUSG00000024670	Cd6	-	CD6 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-56192420-3	chr1	56192321	56192521	+	898.861084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER92D|LTR|ERV1	173443.0	NR_126076	69356.0	Mm.393775	NR_126075	ENSMUSG00000100372	1700003I22Rik	-	RIKEN cDNA 1700003I22 gene	ncRNA	1.44042170891232	1.4938698992542	0.898873282958048	1.25428367510875	1.81727179687102	1.97731195845036	0.902349974024932	1.26046868659954	0.973397469003359	0.447846212014177	0.914814758844887
Merged-chr19-4284482-3	chr19	4284380	4284580	+	927.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1343.0	NM_026720	68423.0	Mm.23642	NM_026720	ENSMUSG00000005986	Ankrd13d	0710001P18Rik|AI430801	ankyrin repeat domain 13 family, member D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-39820222-3	chr5	39820137	39820337	+	927.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-175606.0	NM_010474	15476.0	Mm.12559	NM_010474	ENSMUSG00000051022	Hs3st1	3-Ost|D5Wsu110e|Hsg3ost	heparan sulfate (glucosamine) 3-O-sulfotransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-26236282-2	chr13	26236182	26236382	+	648.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17A|LTR|ERVK	76124.0	NR_045933	73576.0	Mm.45473	NR_045933	ENSMUSG00000084811	1700092E19Rik	-	RIKEN cDNA 1700092E19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-55016310-4	chr6	55016190	55016390	+	999.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB2|LINE|L1	-21711.0	NM_180678	353172.0	Mm.250004	NM_180678	ENSMUSG00000029777	Gars	GENA202|Gena201|Nmf249|Sgrp23	glycyl-tRNA synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122682643-3	chr8	122682525	122682725	+	693.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009824, intron 1 of 11)	intron (NM_009824, intron 1 of 11)	-4450.0	NM_177289	12398.0	Mm.194339	NM_009824	ENSMUSG00000006362	Cbfa2t3	A630044F12Rik|AI465270|AW229127|Cbfa2t3h|ETO-2|Eto2|MTGR2	core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115642848-2	chr11	115642748	115642948	+	959.819458	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14553.0	NM_001252395	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-7733558-2	chr9	7733458	7733658	+	560.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30519.0	NM_133739	71929.0	Mm.283293	NM_133739	ENSMUSG00000050912	Tmem123	2310075C12Rik	transmembrane protein 123	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-90408898-1	chr9	90408798	90408998	+	752.5	f0_balb.idr	Intergenic	RLTR40|LTR|ERVK	-138129.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-35942319-4	chr18	35942227	35942427	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22503.0	NM_001289602	74002.0	Mm.196944	NM_028707	ENSMUSG00000024347	Psd2	6330404E20Rik|AW125584|EFA6C	pleckstrin and Sec7 domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-6414243-2	chr11	6414143	6414343	+	846.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1627.0	NM_008907	268373.0	Mm.5246	NM_008907	ENSMUSG00000071866	Ppia	2700098C05|Cphn|CyP-18|CypA	peptidylprolyl isomerase A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-111298621-4	chr10	111298544	111298744	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027914)	promoter-TSS (NM_027914)	-35.0	NM_027914	71769.0	Mm.45256	NM_027914	ENSMUSG00000035759	Bbs10	1300007O09Rik|AI452285	Bardet-Biedl syndrome 10 (human)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94858852-4	chr10	94858756	94858956	+	829.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018797, intron 9 of 30)	intron (NM_018797, intron 9 of 30)	85722.0	NM_018797	54712.0	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-35331453-2	chr12	35331353	35331553	+	652.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M5|LINE|L1	-136556.0	NR_030449	751520.0		NR_030449	ENSMUSG00000076253	Mir680-3	Mirn680-3	microRNA 680-3	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-157086327-2	chr1	157086227	157086427	+	593.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22323.0	NM_001305059	73435.0	Mm.116705	NM_028540	ENSMUSG00000026592	Tex35	1700057K13Rik	testis expressed 35	protein-coding	-1.50695881233615	-1.47408814243565	-1.48402850432579	-1.49219381354826	-1.50465135208702	-1.31552675169925	-1.16896367858519	-1.49073222710138	2.21131002536405	0.516250060543101	1
Merged-chr15-35305231-3	chr15	35305129	35305329	+	710.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9117.0	NM_054049	107587.0	Mm.46336	NM_054049	ENSMUSG00000022330	Osr2	5430409I15Rik|Osr2A|Osr2B	odd-skipped related 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-46312926-2	chr18	46312826	46313026	+	611.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001160399)	promoter-TSS (NM_001160399)	-998.0	NM_001160399	240261.0	Mm.329416	NM_001160399	ENSMUSG00000071855	Ccdc112	8430438M01Rik|AW108467	coiled-coil domain containing 112	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-12089856-4	chr16	12089752	12089952	+	777.216675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028277, intron 2 of 4)	intron (NM_028277, intron 2 of 4)	105739.0	NM_001174086	72555.0	Mm.310139	NM_028277	ENSMUSG00000022494	Shisa9	2700045P11Rik|Ckamp44	shisa family member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-11076200-4	chr4	11076097	11076297	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001085493)	promoter-TSS (NM_001085493)	8.0	NM_001085493	76947.0	Mm.275265	NM_001085493	ENSMUSG00000050323	Ndufaf6	2310030N02Rik	NADH dehydrogenase (ubiquinone) complex I, assembly factor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-103051479-4	chr11	103051377	103051577	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008707, intron 3 of 11)	intron (NM_008707, intron 3 of 11)	22934.0	NM_008707	18107.0	Mm.10265	NM_008707	ENSMUSG00000020936	Nmt1	AW536594	N-myristoyltransferase 1	protein-coding	1.97113255781132	3.00178619854158	2.89823781929519	1.27070501383561	2.82768591252305	2.64481330199906	2.16730038908667	1.27643167429969	-0.22561405952123	0.821667432371866	0.998431161219273
Merged-chr18-23604075-1	chr18	23603975	23604175	+	779.0	f0_balb.idr	3' UTR (NM_010087, exon 12 of 12)	3' UTR (NM_010087, exon 12 of 12)	106593.0	NM_001285810	13527.0	Mm.94371	NM_010087	ENSMUSG00000024302	Dtna	2210407P21Rik|DTN-A|Dtn|Gm19389|a-DB-1|adbn	dystrobrevin alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-88537436-1	chr5	88537336	88537536	+	583.0	f1_balb.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-9539.0	NM_152839	16069.0	Mm.1192	NM_152839	ENSMUSG00000067149	Jchain	9530090F24Rik|AI323815|Igj|Jch	immunoglobulin joining chain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134828376-3	chr6	134828236	134828436	+	776.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1863.0	NM_177687	232430.0	Mm.267010	NM_177687	ENSMUSG00000032652	Crebl2	AI046348|B230205M03	cAMP responsive element binding protein-like 2	protein-coding	-0.803756805663828	-0.299982761066104	-0.797344482233127	-0.37374293929973	-0.803162521498155	-0.792145777008349	-0.796653994054747	-0.79933643814699	-3.10276577834477	0.29212089431697	1
Merged-chr7-98103457-3	chr7	98103347	98103547	+	935.833374	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008663, intron 3 of 48)	intron (NM_008663, intron 3 of 48)	5801.0	NM_001256082	17921.0	Mm.1403	NM_008663	ENSMUSG00000030761	Myo7a	Hdb|Myo7|USH1B|nmf371|polka|sh-1|sh1	myosin VIIA	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99539454-4	chr7	99539317	99539517	+	947.107178	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178220, intron 1 of 14)	intron (NM_178220, intron 1 of 14)	3931.0	NM_177231	109689.0	Mm.260193	NM_177231	ENSMUSG00000018909	Arrb1	1200006I17Rik|AW208571|G430100A01Rik	arrestin, beta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-77456001-2	chr8	77455901	77456101	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030113, intron 1 of 22)	AT_rich|Low_complexity|Low_complexity	-61055.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-53267129-4	chr5	53267037	53267237	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145433)	promoter-TSS (NM_001145433)	31.0	NM_001145433	66278.0	Mm.27900	NM_001145433	ENSMUSG00000061461	Smim20	1110067B18Rik|1810013D10Rik|N28078	small integral membrane protein 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-63216591-2	chr4	63216469	63216669	+	567.75	f0_balb.idr|f1_balb.idr	intron (NM_025685, intron 1 of 60)	intron (NM_025685, intron 1 of 60)	1157.0	NM_025685	373864.0	Mm.194116	NM_025685	ENSMUSG00000045672	Col27a1	5730512J02Rik|AI449266	collagen, type XXVII, alpha 1	protein-coding	1.54171416136346	0.697263031875968	0.685561461202572	1.56593483379474	1.2120523075991	1.25817803168716	0.89282596167451	0.678036965376931	-0.720918111162967	0.636463467324383	0.982417279970648
Merged-chr10-25292790-1	chr10	25292690	25292890	+	580.0	f1_balb.idr	intron (NM_018747, intron 1 of 7)	intron (NM_018747, intron 1 of 7)	6373.0	NM_018747	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	2.11483793140532	2.36983590775355	2.65991155096605	2.77319506026636	1.63459466779317	2.77209948657723	2.96010360724029	2.78728700266323	0.265219678472937	0.742838318479482	0.998431161219273
Merged-chr2-79302602-3	chr2	79302498	79302698	+	640.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010576, intron 16 of 27)	intron (NM_010576, intron 16 of 27)	47172.0	NM_010576	16401.0	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-68851233-2	chr11	68851133	68851333	+	641.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023668, intron 1 of 8)	intron (NM_023668, intron 1 of 8)	1898.0	NM_023668	83431.0	Mm.31979	NM_023668	ENSMUSG00000018736	Ndel1	2600006O07Rik|MITAP1|NUDEL|mNudel	nudE neurodevelopment protein 1 like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16010100-3	chr7	16010023	16010223	+	663.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10628.0	NM_001081418	243842.0	Mm.440249	NM_001081418	ENSMUSG00000070808	Bicra	Gltscr1	BRD4 interacting chromatin remodeling complex associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167686101-2	chr2	167686001	167686201	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-2814.0	NM_009883	12608.0	Mm.439656	NM_009883	ENSMUSG00000056501	Cebpb	C/EBPbeta|CRP2|IL-6DBP|LAP|LIP|NF-IL6|NF-M|Nfil6	CCAAT/enhancer binding protein (C/EBP), beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-88419590-3	chr4	88419491	88419691	+	651.43335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025760, intron 6 of 6)	intron (NM_025760, intron 6 of 6)	19335.0	NM_025760	66775.0	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	-1.84243072036643	-1.81277471750326	-1.82174293754767	-1.68799865697732	-1.69923788026336	-1.81083126680782	-1.81971272910741	-1.82779105346464	0.037684011990387	0.991491645451152	1
Merged-chr17-87315423-4	chr17	87315343	87315543	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028639, intron 5 of 19)	intron (NM_028639, intron 5 of 19)	32557.0	NM_028639	225049.0	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-9882502-4	chr13	9882382	9882582	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033269, intron 4 of 4)	intron (NM_033269, intron 4 of 4)	-117161.0	NM_144516	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-20649347-2	chr9	20649247	20649447	+	615.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-2783.0	NM_023371	23988.0	Mm.7906	NM_023371	ENSMUSG00000032171	Pin1	0610025L01Rik|D9Bwg1161e	protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132815226-4	chr4	132815127	132815327	+	869.8291630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR19-int|LTR|ERVK	-18863.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-136701998-2	chr3	136701898	136702098	+	739.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008913, intron 1 of 13)	intron (NM_008913, intron 1 of 13)	31932.0	NM_001293622	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102432209-2	chr12	102432109	102432309	+	663.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011175, intron 1 of 13)	MER2|DNA|TcMar-Tigger	7604.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-88230938-4	chr7	88230859	88231059	+	971.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MCc|LINE|L1	-47126.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	1.13438458170936	1.52546254812187	0.748490472628519	1.31387018911592	1.14418844252743	1.29563727039525	0.750912162625027	1.07428749992382	-0.586051839393257	0.67464186146875	0.99440487726309
Merged-chr13-8061301-2	chr13	8061201	8061401	+	604.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-141565.0	NM_001289530	94191.0	Mm.425794	NM_052977	ENSMUSG00000052551	Adarb2	Adar3|RED2	adenosine deaminase, RNA-specific, B2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-134507525-4	chr5	134507410	134507610	+	907.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009990, intron 8 of 16)	B3A|SINE|B2	44924.0	NM_001039162	269713.0	Mm.255138	NM_009990	ENSMUSG00000063146	Clip2	B230327O20|CLIP-115|Clip1|Cyln2|WSCR4|mKIAA0291|wbscr4	CAP-GLY domain containing linker protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-85299719-5	chr8	85299611	85299811	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022997)	promoter-TSS (NM_022997)	79.0	NR_028268	56452.0	Mm.29709	NM_019716	ENSMUSG00000031697	Orc6	6720420I10Rik|Orc6l	origin recognition complex, subunit 6	protein-coding	6.13146633368806	5.70525664341419	5.955520504742	5.88109282969593	6.23788916621486	5.85064911539949	6.07471822825404	5.18310063742975	-0.0417483198537362	0.876227187548918	0.998431161219273
Merged-chr11-49241722-2	chr11	49241622	49241822	+	610.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2469.0	NM_010794	17308.0	Mm.196933	NM_010794	ENSMUSG00000020346	Mgat1	Mgat-1	mannoside acetylglucosaminyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180641191-7	chr1	180641127	180641327	+	948.714294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_120498)	promoter-TSS (NR_120498)	77.0	NR_120498	72568.0	Mm.275044	NM_175186	ENSMUSG00000058729	Lin9	2700022J23Rik|Bara|Lin-9|TGS|TGS1|mLin-9	lin-9 homolog (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-79613598-2	chr13	79613498	79613698	+	596.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-1269786.0	NR_153410	105171.0	Mm.423137	NM_001042591	ENSMUSG00000074794	Arrdc3	AI450344|mKIAA1376	arrestin domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-114018661-2	chr6	114018561	114018761	+	671.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009723, intron 1 of 21)	Lx8|LINE|L1	23419.0	NM_009723	11941.0	Mm.321755	NM_009723	ENSMUSG00000030302	Atp2b2	D6Abb2e|Gena300|PMCA2|Tmy|dfw|jog|wms|wri	ATPase, Ca++ transporting, plasma membrane 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-21424334-2	chr5	21424234	21424434	+	672.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177869)	promoter-TSS (NM_177869)	343.0	NM_029195	75172.0	Mm.426695	NM_029195	ENSMUSG00000064280	Ccdc146	4930528G09Rik|mKIAA1505	coiled-coil domain containing 146	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-51064890-5	chr14	51064712	51064912	+	939.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6630.0	NM_207558	404319.0	Mm.377276	NM_207558	ENSMUSG00000035932	Olfr750	GA_x5J8B7W5WBF-6267395-6266441|GA_x6K02T2PMLR-6808276-6807281|MOR103-18	olfactory receptor 750	protein-coding	3.73574770078485	2.88121793581808	3.25186240455703	2.37547361754313	4.07538102715894	3.88569579479564	3.06197031768061	3.71567092462952	0.879413136761774	0.141029199934643	0.585878914195267
Merged-chr2-170134196-2	chr2	170134096	170134296	+	619.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159683, intron 1 of 6)	intron (NM_001159683, intron 1 of 6)	-2976.0	NM_001033299	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85456588-2	chr12	85456488	85456688	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17302.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-46576442-4	chr18	46576340	46576540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1907.0	NM_173394	225471.0	Mm.149280	NM_173394	ENSMUSG00000056130	Ticam2	B430113A10|TICAM-2|TRAM|Tirp|Trif	toll-like receptor adaptor molecule 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-172388245-2	chr2	172388145	172388345	+	584.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-5549.0	NM_001080820	320664.0	Mm.210195	NM_001033538	ENSMUSG00000074570	Cass4	F730031O20Rik	Cas scaffolding protein family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-138165406-2	chr5	138165306	138165506	+	619.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029787)	promoter-TSS (NR_029787)	-2.0	NR_029787	723926.0		NR_029787	ENSMUSG00000065394	Mir25	Mirn25|mir-25|mmu-mir-25	microRNA 25	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47910999-2	chr17	47910899	47911099	+	981.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028767, intron 1 of 16)	intron (NM_028767, intron 1 of 16)	13633.0	NM_028767	74123.0	Mm.240062	NM_028767	ENSMUSG00000023991	Foxp4	1200010K03Rik|2310007G05Rik|mFKHLA	forkhead box P4	protein-coding	0.220910695511577	0.572006658702449	0.0957043788027938	0.498006032989237	0.224967347287449	0.581266136246554	0.0968544464561099	0.0923885388130594	-0.713736305067636	0.714794447705787	1
Merged-chr19-55797958-2	chr19	55797858	55798058	+	596.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001331146, intron 4 of 14)	intron (NM_001331146, intron 4 of 14)	56148.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-44757631-2	chr4	44757531	44757731	+	671.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_138590, intron 1 of 8)	intron (NM_138590, intron 1 of 8)	1072.0	NM_138590	319885.0	Mm.331576	NM_138590	ENSMUSG00000035649	Zcchc7	4930572I07Rik|D4Wsu132e	zinc finger, CCHC domain containing 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-15959086-3	chr3	15958992	15959192	+	799.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081687, intron 3 of 3)	intron (NM_001081687, intron 3 of 3)	47240.0	NM_001081687	381484.0	Mm.217376	NM_001081687	ENSMUSG00000078780	Gm5150	-	predicted gene 5150	protein-coding	2.3536552561505	1.20110164621053	1.89366922844826	1.12360248797526	3.54716814266076	1.21036685389021	2.95715530893693	2.60912451931696	2.21424094001745	0.0357782720989072	0.267957371187696
Merged-chr1-55405785-4	chr1	55405669	55405869	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001114663)	promoter-TSS (NM_001114663)	-177.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	4.62163365474168	3.27958484815026	4.55505853792822	4.43537240336485	4.87810380277166	3.30707095405374	4.80945189779322	5.32929350525976	0.551766993020995	0.250319335631241	0.748509191602971
Merged-chr8-84211574-2	chr8	84211571	84211771	+	927.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172503, exon 14 of 14)	3' UTR (NM_172503, exon 14 of 14)	-2764.0	NR_037294	100526528.0		NR_037294	ENSMUSG00000105458	Mir3074-2	mir-3074-2|mmu-mir-3074-2	microRNA 3074-2	ncRNA	0.917608605000332	0.176079615528363	0.978339444086268	0.163221918176379	0.568224342262636	0.177704923547326	0.170441270103374	0.164205641378459	-2.19569322484497	0.297509966573751	1
Merged-chr7-99132836-3	chr7	99132767	99132967	+	781.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 1 of 14)	intron (NM_178635, intron 1 of 14)	8277.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	1.5735292789141	2.12281897640776	2.18499129249345	1.20674081715913	1.75088512531527	2.89597147630282	3.00278242778169	1.84363978221734	1.57023754972168	0.108159768115355	0.51468835186992
Merged-chr17-73946777-2	chr17	73946677	73946877	+	571.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011723, intron 1 of 35)	intron (NM_011723, intron 1 of 35)	3419.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-35536273-4	chr6	35536176	35536376	+	765.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008098, intron 1 of 3)	intron (NM_008098, intron 1 of 3)	3612.0	NM_008098	14489.0	Mm.182746	NM_008098	ENSMUSG00000029840	Mtpn	5033418D15Rik|Gcdp|V1	myotrophin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135064142-4	chr5	135064029	135064229	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025362)	promoter-TSS (NM_025362)	-77.0	NM_025362	66114.0	Mm.178012	NM_025362	ENSMUSG00000061118	Dnajc30	1300007M11Rik|Wbscr18	DnaJ heat shock protein family (Hsp40) member C30	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141357305-2	chr7	141357205	141357405	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_133191, exon 12 of 21)	exon (NM_133191, exon 12 of 21)	7805.0	NR_033532	320871.0	Mm.475463	NM_177280	ENSMUSG00000086844	B230206H07Rik	-	RIKEN cDNA B230206H07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88535071-2	chr3	88534971	88535171	+	580.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001029890, intron 1 of 1)	intron (NM_001029890, intron 1 of 1)	1311.0	NR_035434	100316808.0		NR_035434	ENSMUSG00000084728	Mir1905	Mirn1905|mmu-mir-1905	microRNA 1905	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-90221742-2	chr7	90221642	90221842	+	622.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	43690.0	NM_029256	75338.0	Mm.487222	NM_029256	ENSMUSG00000030617	Ccdc83	4930549K11Rik|4930554C01Rik|4932423M01Rik	coiled-coil domain containing 83	protein-coding	0.00284783343525519	0.216934499109014	0.693417891365449	0.0101885171419595	0.00394098740570473	0.22187942106361	0.602318561990248	0.0109599645944526	-0.22049759814029	0.916881947471809	1
Merged-chr11-115001062-2	chr11	115000979	115001179	+	958.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134158, intron 1 of 3)	intron (NM_134158, intron 1 of 3)	801.0	NM_134158	140497.0	Mm.2699	NM_134158	ENSMUSG00000044811	Cd300c2	CLM4|Cd300c|Cd300d|DIgR1|Igsf7|Lmir2|MAIR-II	CD300C molecule 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19475162-2	chr7	19475059	19475259	+	807.5	f0_c57.idr|f1_balb.idr	Intergenic	MTD|LTR|ERVL-MaLR	-16665.0	NM_172279	232944.0	Mm.260504	NM_172279	ENSMUSG00000030397	Mark4	2410090P21Rik|C79806|Markl1	MAP/microtubule affinity regulating kinase 4	protein-coding	2.41995749730741	2.40992839779534	1.36032568132925	1.09363009897059	1.60791186545424	1.80778908971984	1.36969999694341	2.35057319222967	-0.33242229348002	0.764169963403353	0.998431161219273
Merged-chr9-97307955-3	chr9	97307856	97308056	+	668.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	62002.0	NM_030219	78911.0	Mm.108347	NM_030219	ENSMUSG00000032451	Trim42	4930486B16Rik	tripartite motif-containing 42	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106890237-2	chr11	106890137	106890337	+	660.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025481, intron 1 of 18)	intron (NM_025481, intron 1 of 18)	30478.0	NM_025481	66313.0	Mm.340955	NM_025481	ENSMUSG00000018363	Smurf2	2810411E22Rik|AI558114|AI649275	SMAD specific E3 ubiquitin protein ligase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-82814787-4	chr10	82814657	82814857	+	988.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038042, intron 1 of 2)	intron (NR_038042, intron 1 of 2)	2634.0	NR_038042	70003.0	Mm.48789	NR_038042	ENSMUSG00000056821	1700028I16Rik	-	RIKEN cDNA 1700028I16 gene	ncRNA	3.67541866492748	4.23625249234937	3.68581575387814	4.62248201451098	3.98811416921781	3.20666670167741	3.44008913000358	4.32225413800234	-0.40466537102827	0.420859397410472	0.900322118218157
Merged-chr8-57487953-4	chr8	57487855	57488055	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021788)	promoter-TSS (NM_021788)	-8.0	NR_126553	78353.0	Mm.426240	NR_126553	ENSMUSG00000096917	2500002B13Rik	-	RIKEN cDNA 2500002B13 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-123335069-4	chr3	123334961	123335161	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027135, intron 10 of 22)	intron (NM_027135, intron 10 of 22)	50929.0	NM_201638	210529.0	Mm.260039	NM_201638	ENSMUSG00000028114	Mettl14	G430022H21Rik|mKIAA1627	methyltransferase like 14	protein-coding	5.61195431697208	6.09654493645768	5.10784266497462	6.31958662551564	5.58815391145775	6.13241533439496	5.710525179013	6.19063163155274	0.0762228835993323	0.793373517760105	0.998431161219273
Merged-chr2-91495453-4	chr2	91495358	91495558	+	858.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172668, intron 28 of 37)	intron (NM_172668, intron 28 of 37)	-31304.0	NM_001165989	75786.0	Mm.168478	NM_029437	ENSMUSG00000040549	Ckap5	3110043H24Rik|4930432B04Rik|D730027C18Rik|T25636|mKIAA0097	cytoskeleton associated protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-109441642-4	chr13	109441542	109441742	+	992.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011056, intron 3 of 16)	intron (NM_011056, intron 3 of 16)	116898.0	NR_030644	100124489.0		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-92434608-3	chr2	92434508	92434708	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009963)	promoter-TSS (NM_009963)	-539.0	NM_009963	12953.0	Mm.254181	NM_009963	ENSMUSG00000068742	Cry2	AV006279|D130054K12Rik	cryptochrome 2 (photolyase-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101083654-2	chr7	101083554	101083754	+	554.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB4|LINE|L1	-25121.0	NM_001146010	207278.0	Mm.263041	NM_199012	ENSMUSG00000030691	Fchsd2	BC034086|R74866|Sh3md3|mKIAA0769	FCH and double SH3 domains 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126793631-2	chr7	126793531	126793731	+	990.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1084.0	NM_019674	56420.0	Mm.41998	NM_019674	ENSMUSG00000030697	Ppp4c	1110002D08Rik|AU016079|PP-X|PP4C|Ppx|pp4	protein phosphatase 4, catalytic subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3384583-3	chr19	3384491	3384691	+	939.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_013495, exon 19 of 19)	3' UTR (NM_013495, exon 19 of 19)	-4266.0	NM_001039658	17771.0	Mm.209941	NM_010841	ENSMUSG00000024905	Tesmin	Mtl5	testis expressed metallothionein like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-25156319-4	chr8	25156220	25156420	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177089, exon 13 of 13)	3' UTR (NM_177089, exon 13 of 13)	2913.0	NR_106187	102467006.0		NR_106187	ENSMUSG00000099142	Mir8108	Gm27484|mmu-mir-8108	microRNA 8108	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-54844596-4	chr12	54844517	54844717	+	984.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18260.0	NM_007688	12632.0	Mm.276826	NM_007688	ENSMUSG00000062929	Cfl2	-	cofilin 2, muscle	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-109940560-3	chr6	109940464	109940664	+	908.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MDa|LINE|L1	-704948.0	NM_001346640	108073.0	Mm.240881	NM_177328	ENSMUSG00000056755	Grm7	6330570A01Rik|BB176677|C030018L03|E130018M02Rik|Gpr1g|Gprc1g|SMN2|Tg(SMN2)89Ahmb|mGluR7	glutamate receptor, metabotropic 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126668712-2	chr7	126668612	126668812	+	713.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029339, intron 4 of 9)	ORR1E|LTR|ERVL-MaLR	7706.0	NM_133670	20887.0	Mm.368982	NM_133670	ENSMUSG00000030711	Sult1a1	AI266890|PST|ST1A1|ST1A4|Stp|Stp1|mSTp1	sulfotransferase family 1A, phenol-preferring, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-61698143-2	chr9	61698043	61698243	+	864.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	216367.0	NM_018853	56040.0	Mm.3158	NM_018853	ENSMUSG00000007892	Rplp1	2410042H16Rik|Arpp1|C430017H15Rik	ribosomal protein, large, P1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-38313552-2	chr2	38313452	38313652	+	964.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25729.0	NM_001290646	16870.0	Mm.142856	NM_010710	ENSMUSG00000000247	Lhx2	LH2A|Lh-2|Lim2|ap|apterous	LIM homeobox protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-14068045-5	chr14	14068010	14068210	+	855.679993	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139227, intron 4 of 11)	intron (NM_139227, intron 4 of 11)	52794.0	NM_025550	66413.0	Mm.27591	NM_025550	ENSMUSG00000021737	Psmd6	2400006A19Rik	proteasome (prosome, macropain) 26S subunit, non-ATPase, 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-8979695-2	chr3	8979631	8979831	+	881.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_009412, intron 1 of 5)	RMER1C|Other|Other	-15585.0	NM_001025261	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	0.395347629317897	0.0306629733416245	0.0248935850115826	0.0204350821846155	0.676642278197614	0.663939241225262	0.0261669500478313	0.021214451207122	1.96273646015171	0.38037948766835	1
Merged-chr8-14627138-4	chr8	14627047	14627247	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172910, intron 4 of 15)	intron (NM_172910, intron 4 of 15)	-261389.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	3.35383484026857	3.58932086343249	4.3637555571673	3.45528163993999	3.59863988623359	4.02196467579447	4.48275636611353	3.07214492445116	0.194759057556568	0.718160685402844	0.998431161219273
Merged-chr7-4060939-2	chr7	4060839	4061039	+	755.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178611, intron 1 of 6)	MMETn-int|LTR|ERVK	2265.0	NM_001302677	52855.0	Mm.290880	NM_178611	ENSMUSG00000055541	Lair1	5133400O11Rik|BB115266|D7Bwg0421e|Lair-1	leukocyte-associated Ig-like receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-117881437-4	chr6	117881321	117881521	+	850.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER68|LTR|ERVL	18540.0	NM_001001792	22685.0	Mm.249661	NM_008616	ENSMUSG00000042097	Zfp239	Mok-2|Mok2|Znf239	zinc finger protein 239	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-114015632-3	chr7	114015579	114015779	+	664.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145584, intron 6 of 15)	intron (NM_145584, intron 6 of 15)	102102.0	NM_025846	66922.0	Mm.276572	NM_025846	ENSMUSG00000055723	Rras2	2610016H24Rik|C86394|TC21	related RAS viral (r-ras) oncogene 2	protein-coding	2.69186438398026	1.31782916412166	3.58923785977332	1.92679937706195	1.44254818061392	1.87645296715389	2.45629092651424	2.93753835742699	-0.702733651580642	0.470296318853055	0.925692944111129
Merged-chr11-80129902-2	chr11	80129802	80130002	+	598.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001029856, intron 19 of 22)	intron (NM_001029856, intron 19 of 22)	12251.0	NM_183275	68550.0	Mm.18466	NM_183275	ENSMUSG00000046909	Tefm	1110002N22Rik	transcription elongation factor, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-73030999-4	chr11	73030916	73031116	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018883, intron 9 of 15)	intron (NM_018883, intron 9 of 15)	12008.0	NM_018883	55984.0	Mm.9998	NM_018883	ENSMUSG00000020785	Camkk1	AI846603|CaMKKalpha|Camkk	calcium/calmodulin-dependent protein kinase kinase 1, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88173569-2	chr3	88173469	88173669	+	646.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_045997, intron 2 of 2)	intron (NR_045997, intron 2 of 2)	4216.0	NR_045997	76642.0	Mm.424420	NR_045997	ENSMUSG00000096935	1700113A16Rik	2210408E11Rik|AA408983	RIKEN cDNA 1700113A16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-83922446-2	chr13	83922346	83922546	+	697.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_036594, intron 2 of 2)	L1_Mus3|LINE|L1	31238.0	NR_036594	72677.0	Mm.245636	NR_036594	ENSMUSG00000100891	2810049E08Rik	-	RIKEN cDNA 2810049E08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-55757336-4	chr16	55757232	55757432	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	64806.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41978514-2	chr19	41978414	41978614	+	632.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028152, intron 1 of 30)	MTC|LTR|ERVL-MaLR	2622.0	NM_028152	72199.0	Mm.218940	NM_028152	ENSMUSG00000025159	Mms19	2410001K24Rik|2610042O15Rik|AI316855|C79368|C86341|Mms19l	MMS19 (MET18 S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-67526744-4	chr11	67526641	67526841	+	993.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6257.0	NM_008088	14457.0	Mm.40338	NM_008088	ENSMUSG00000033066	Gas7	AW124766|B230343A10Rik|Gas7-cb	growth arrest specific 7	protein-coding	2.57881136394793	3.16952406160088	3.27851724149981	2.38537222302979	2.60067031882009	1.53091302555551	2.91764902316466	2.10256642381391	-0.991579287460064	0.219673145895758	0.710826235364411
Merged-chr1-77832384-4	chr1	77832288	77832488	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-317300.0	NM_007936	13838.0	Mm.400747	NM_007936	ENSMUSG00000026235	Epha4	2900005C20Rik|AI385584|Cek8|Hek8|Sek|Sek1|Tyro1|rb	Eph receptor A4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53108447-4	chr4	53108347	53108547	+	943.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 6 of 49)	intron (NM_013454, intron 6 of 49)	51448.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-16883708-4	chr6	16883612	16883812	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031198, intron 1 of 6)	MLT1D|LTR|ERVL-MaLR	14729.0	NM_031198	21426.0	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-52431675-4	chr5	52431548	52431748	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001256059, intron 3 of 11)	intron (NM_001256059, intron 3 of 11)	-9511.0	NR_152197	100041805.0	Mm.417070	NR_152197		Gm3519	Gm43683	predicted gene 3519	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70383503-4	chr8	70383406	70383606	+	839.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001004062, exon 14 of 14)	3' UTR (NM_001004062, exon 14 of 14)	9958.0	NM_016685	12845.0	Mm.45071	NM_016685	ENSMUSG00000031849	Comp	TSP5	cartilage oligomeric matrix protein	protein-coding	-1.36266614182147	-1.47724156218815	-1.48662351733989	-1.34670914905961	-1.35888283319378	-1.47520845336901	-1.48449964834014	-1.49295065382901	-0.634492517116813	0.845572700457857	1
Merged-chr18-36038595-2	chr18	36038495	36038695	+	630.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001167891, intron 3 of 9)	intron (NM_001167891, intron 3 of 9)	-67608.0	NR_015571	74966.0	Mm.379238	NM_030089		4930471G03Rik	1700007N01Rik	RIKEN cDNA 4930471G03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-65242019-4	chr13	65241919	65242119	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-36303.0	NM_175290	97895.0	Mm.315815	NM_175290	ENSMUSG00000032999	Nlrp4f	C330026N02Rik|C86045|Nalp-kappa|Nalp4f	NLR family, pyrin domain containing 4F	protein-coding	2.76924795627727	3.72583145093196	3.19119202310375	3.5641273850892	2.05545349993167	2.80320795215509	2.70500113982802	1.47257377617959	-1.82175962345564	0.0144431236777687	0.141344696481133
Merged-chr3-94611611-2	chr3	94611511	94611711	+	629.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28895.0	NM_029721	76742.0	Mm.28160	NM_029721	ENSMUSG00000028136	Snx27	5730552M22Rik|ESTM45|ESTM47|R75405	sorting nexin family member 27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-111039927-3	chr9	111039869	111040069	+	911.9833369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008522, intron 15 of 16)	intron (NM_008522, intron 15 of 16)	17275.0	NM_001302377	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-46779994-3	chr11	46779901	46780101	+	920.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_134248)	TTS (NM_134248)	28833.0	NM_134248	171283.0	Mm.17771	NM_134248	ENSMUSG00000040405	Havcr1	AI503787|KIM-1|TIM-1|Tim1|Timd1	hepatitis A virus cellular receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-84318685-3	chr17	84318566	84318766	+	904.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183021, intron 28 of 37)	intron (NM_183021, intron 28 of 37)	-130719.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-34506200-7	chr18	34506056	34506256	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146084, intron 1 of 20)	intron (NM_146084, intron 1 of 20)	667.0	NM_146084	225358.0	Mm.226899	NM_146084	ENSMUSG00000036501	Fam13b	2610024E20Rik|AW060714|AW546153	family with sequence similarity 13, member B	protein-coding	3.76309969821334	3.07071142095427	1.93050820308772	2.61697810048831	4.21962226277756	3.09441580149668	3.81761331064986	2.88891254953546	0.929248871512346	0.176333038474131	0.646092365840656
Merged-chr7-125541109-4	chr7	125540989	125541189	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1H|LTR|ERVL-MaLR	-11193.0	NM_001008700	16190.0	Mm.233802	NM_010557	ENSMUSG00000030748	Il4ra	CD124|Il4r	interleukin 4 receptor, alpha	protein-coding	-0.885343988398316	-0.873197811915141	-0.879568534556306	-0.464008891048743	-0.884809499207366	-0.870535133016439	-0.878945546113603	-0.458408536970068	0.0285539633070526	0.992673327504828	1
Merged-chr7-5013480-2	chr7	5013380	5013580	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001110330)	promoter-TSS (NM_001110330)	17.0	NM_001360243	23877.0	Mm.38911	NM_011813	ENSMUSG00000061374	Fiz1	AI790204|mFLJ00416	Flt3 interacting zinc finger protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116128951-2	chr11	116128851	116129051	+	544.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178802, intron 1 of 5)	B1_Mur1|SINE|Alu	2177.0	NM_178802	338364.0	Mm.439976	NM_178802	ENSMUSG00000054517	Trim65	4732463G12Rik	tripartite motif-containing 65	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-21425944-3	chr10	21425846	21426046	+	855.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48646.0	NM_178713	237320.0	Mm.90181	NM_178713	ENSMUSG00000037542	Aldh8a1	Raldh4	aldehyde dehydrogenase 8 family, member A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-54795077-2	chr13	54794977	54795177	+	685.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_028841, exon 5 of 8)	exon (NM_028841, exon 5 of 8)	5672.0	NM_028841	74257.0	Mm.32883	NM_028841	ENSMUSG00000025875	Tspan17	2210021G21Rik|AI047581|Fbxo23|Tm4sf17	tetraspanin 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-74531768-4	chr5	74531676	74531876	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178672)	promoter-TSS (NM_178672)	-34.0	NM_001114660	212986.0	Mm.134147	NM_178672	ENSMUSG00000062110	Scfd2	E430013M20Rik|STXBP1L1	Sec1 family domain containing 2	protein-coding	3.76602681039666	2.86923912202256	3.33102704117886	3.54874427688817	3.64114908426787	2.10915825985141	3.80773975643218	3.5664318572831	0.0126119147674248	0.983802197116606	0.998431161219273
Merged-chr13-20212866-4	chr13	20212775	20212975	+	973.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 4 of 21)	MIRb|SINE|MIR	122368.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	1.82913340956005	1.52846350376038	1.088921633859	2.02233814446972	2.01158233618289	1.34640556939442	1.78007932672548	1.59800062733388	0.121095328509275	0.914056755326194	0.998431161219273
Merged-chr5-103754085-4	chr5	103753993	103754193	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080798)	promoter-TSS (NM_001080798)	-69.0	NM_133919	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-9715847-1	chr10	9715747	9715947	+	551.0	f0_balb.idr	Intergenic	Intergenic	31125.0	NR_038036	620417.0	Mm.378085	NR_038036	ENSMUSG00000111901	Gm6150	-	predicted gene 6150	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-55580934-1	chr4	55580834	55581034	+	558.0	f1_balb.idr	Intergenic	ORR1D1-int|LTR|ERVL-MaLR	-48459.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	1.66288670048501	1.84617083635016	1.95975566208596	2.85674824396798	2.53410285161771	2.0398630713128	1.97448129905326	2.49597779746416	0.23972172320153	0.791360996565708	0.998431161219273
Merged-chr10-128895633-4	chr10	128895527	128895727	+	790.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3909.0	NM_010272	14561.0	Mm.299218	NM_010272	ENSMUSG00000025352	Gdf11	BMP-11|Bmp11	growth differentiation factor 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135967155-2	chr5	135967055	135967255	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001160366, intron 4 of 10)	B3|SINE|B2	7321.0	NM_001160366	109267.0	Mm.332750	NM_001160366	ENSMUSG00000029699	Ssc4d	C330016E03Rik|S4D-SRCRB|SRCRB-S4D|Srcrb4d	scavenger receptor cysteine rich family, 4 domains	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-108293060-2	chr12	108292960	108293160	+	574.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13210.0	NM_001044380	214305.0	Mm.36423	NM_001044380	ENSMUSG00000021260	Hhipl1	1600002O04Rik|AK129450|mKIAA1822	hedgehog interacting protein-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-143094955-2	chr7	143094855	143095055	+	743.599976	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020277)	promoter-TSS (NM_020277)	-313.0	NM_020277	56843.0	Mm.286668	NM_020277	ENSMUSG00000009246	Trpm5	9430099A16Rik|LTrpC-5|Ltrpc5|Mtr1	transient receptor potential cation channel, subfamily M, member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-110230301-1	chr5	110230201	110230401	+	563.0	f1_balb.idr	promoter-TSS (NM_001253814)	promoter-TSS (NM_001253814)	-703.0	NM_001253814	71782.0	Mm.288442	NM_027922	ENSMUSG00000029501	Ankle2	1110001J12Rik|AI661024|D5Ertd585e	ankyrin repeat and LEM domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-77087199-2	chr16	77087099	77087299	+	762.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013918, intron 17 of 23)	RMER13A2|LTR|ERVK	73130.0	NM_013918	30940.0	Mm.40986	NM_013918	ENSMUSG00000022867	Usp25	-	ubiquitin specific peptidase 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-132812021-3	chr7	132811926	132812126	+	874.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_212473, intron 1 of 4)	intron (NM_212473, intron 1 of 4)	1170.0	NM_212473	77938.0	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98829590-4	chr11	98829498	98829698	+	822.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138660, intron 11 of 13)	intron (NM_138660, intron 11 of 13)	-7187.0	NM_001080925	268480.0	Mm.340766	NM_001080925	ENSMUSG00000038020	Rapgefl1	B230105J10	Rap guanine nucleotide exchange factor (GEF)-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-4254909-2	chr8	4254809	4255009	+	592.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133968, intron 3 of 4)	intron (NM_133968, intron 3 of 4)	1807.0	NM_133968	102209.0	Mm.28452	NM_133968	ENSMUSG00000011837	Snapc2	0610007H10Rik|AU015675	small nuclear RNA activating complex, polypeptide 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-119558003-2	chr8	119557903	119558103	+	886.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019709, intron 1 of 23)	intron (NM_019709, intron 1 of 23)	758.0	NM_001167910	56453.0	Mm.206934	NM_019709	ENSMUSG00000031835	Mbtps1	0610038M03Rik|AV003995|S1P|SKI-1|Ski1|mKIAA0091	membrane-bound transcription factor peptidase, site 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-118004863-2	chr5	118004763	118004963	+	633.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346588, intron 11 of 11)	intron (NM_001346588, intron 11 of 11)	-22880.0	NR_151582	57816.0	Mm.273285	NM_021344	ENSMUSG00000029359	Tesc	1010001A17Rik|2410011K10Rik|TE-1	tescalcin	protein-coding	2.10385291285008	2.22375595546883	2.78223358377662	2.6222486625408	1.70030459248875	2.6182550133706	1.36553274628247	2.54746579602737	-0.647512898290387	0.47909963668743	0.928092227925527
Merged-chr3-144352798-2	chr3	144352698	144352898	+	688.099976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-147543.0	NM_010723	16911.0	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-22366757-3	chr9	22366660	22366860	+	853.366699	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028390, intron 8 of 23)	intron (NM_028390, intron 8 of 23)	22446.0	NM_028390	68743.0	Mm.282751	NM_028390	ENSMUSG00000036777	Anln	1110037A17Rik|2900037I21Rik|C78101|Scraps	anillin, actin binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171463336-4	chr1	171463214	171463414	+	802.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172647, exon 10 of 10)	3' UTR (NM_172647, exon 10 of 10)	25753.0	NM_172647	16456.0	Mm.294882	NM_172647	ENSMUSG00000038235	F11r	9130004G24|AA638916|ESTM33|JAM|JAM-1|JAM-A|Jcam|Jcam1|Ly106	F11 receptor	protein-coding	0.35607478606102	0.213951832560321	0.205216287192472	1.25578277513902	0.188643861521881	0.442736893501715	0.978286205110892	0.199595132137977	-0.520505725457758	0.786072713731414	1
Merged-chr19-5962230-3	chr19	5962078	5962278	+	799.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164057, intron 1 of 17)	B2_Mm1t|SINE|B2	2028.0	NM_001164057	18969.0	Mm.209931	NM_008893	ENSMUSG00000024833	Pola2	AI573378	polymerase (DNA directed), alpha 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-20896092-2	chr9	20895992	20896192	+	562.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016876, intron 6 of 10)	intron (NM_016876, intron 6 of 10)	2498.0	NM_016876	53356.0	Mm.427309	NM_016876	ENSMUSG00000070319	Eif3g	44kDa|D0Jmb4|Eif3s4|TU-189B2|eIF3-p44|p44	eukaryotic translation initiation factor 3, subunit G	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-75255281-2	chr10	75255181	75255381	+	620.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153406, intron 5 of 15)	intron (NM_153406, intron 5 of 15)	42891.0	NM_001145826	74392.0	Mm.27716	NM_153406	ENSMUSG00000033444	Specc1l	4930470P14Rik|4932439K10Rik|9530057A13Rik|AI317249|Cytsa|mKIAA0376	sperm antigen with calponin homology and coiled-coil domains 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-4402137-1	chr2	4402037	4402237	+	701.0	f0_balb.idr	intron (NM_001177843, intron 1 of 23)	intron (NM_001177843, intron 1 of 23)	1161.0	NM_001177843	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-77369969-3	chr16	77369873	77370073	+	774.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015543, intron 2 of 4)	intron (NR_015543, intron 2 of 4)	40645.0	NR_015543	77994.0	Mm.394688	NR_015543	ENSMUSG00000090386	Mir99ahg	2810055G20Rik|D730043B02Rik	Mir99a and Mirlet7c-1 host gene (non-protein coding)	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-13601283-4	chr8	13601192	13601392	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 4 of 23)	L1MC|LINE|L1	-38831.0	NM_001080781	66501.0	Mm.46136	NM_025601	ENSMUSG00000031452	1700029H14Rik	-	RIKEN cDNA 1700029H14 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132076518-2	chr4	132076418	132076618	+	647.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1205.0	NM_001128607	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-60734537-2	chr13	60734437	60734637	+	822.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 17 of 26)	intron (NM_134062, intron 17 of 26)	51827.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31398262-2	chr14	31398162	31398362	+	970.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347585, intron 2 of 7)	(TG)n|Simple_repeat|Simple_repeat	19415.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45405235-4	chr7	45405158	45405358	+	925.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010596)	promoter-TSS (NM_010596)	-702.0	NM_010596	16495.0	Mm.12955	NM_010596	ENSMUSG00000038201	Kcna7	Kv1.7	potassium voltage-gated channel, shaker-related subfamily, member 7	protein-coding	0.328577657834931	0.35013085370701	1.01668311250876	0.503664285476159	0.329926468233873	0.714691040551763	0.67973118895163	0.882369135144892	0.452253913162287	0.799659157081185	1
Merged-chr4-141473584-1	chr4	141473484	141473684	+	604.666687	f1_c57bl6.idr	exon (NM_019763, exon 12 of 16)	exon (NM_019763, exon 12 of 16)	28911.0	NM_009541	22642.0	Mm.389590	NM_009541	ENSMUSG00000006215	Zbtb17	AA589413|Lp-1|Miz1|Zfp100|mZ13	zinc finger and BTB domain containing 17	protein-coding	0.96884454619429	1.35390383343697	0.964572307319262	0.927771312031943	0.619109669677545	0.487172625441987	0.478075127964391	0.470251816284693	-3.72583676655697	0.0275512260764654	1
Merged-chr8-123411605-2	chr8	123411505	123411705	+	682.916626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023279)	promoter-TSS (NM_023279)	41.0	NM_023279	22152.0	Mm.40068	NM_023279	ENSMUSG00000062380	Tubb3	3200002H15Rik|M(beta)3|M(beta)6	tubulin, beta 3 class III	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-109360609-2	chr11	109360509	109360709	+	734.205322	f1_balb.idr|f1_c57bl6.idr	intron (NR_038097, intron 1 of 1)	L1MB5|LINE|L1	-2185.0	NM_010303	14674.0	Mm.193925	NM_010303	ENSMUSG00000020611	Gna13	AU024132|AU043124|Galpha13	guanine nucleotide binding protein, alpha 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-65884568-2	chr3	65884470	65884670	+	965.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	73679.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	-0.852656780069401	-0.841854650010035	-0.396291574298868	-0.42834869531677	-0.85210059224155	-0.839127069955992	-0.846002326517923	-0.848517216391398	-3.01300417742764	0.315051969844007	1
Merged-chr5-25530825-2	chr5	25530725	25530925	+	600.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_027388, exon 1 of 1)	non-coding (NR_027388, exon 1 of 1)	807.0	NR_027388	73571.0	Mm.105263	NR_027388	ENSMUSG00000101856	1700096K18Rik	-	RIKEN cDNA 1700096K18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-114766692-4	chr5	114766624	114766824	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077359, intron 3 of 18)	intron (NM_001077359, intron 3 of 18)	6767.0	NM_019834	26431.0	Mm.195632	NM_019834	ENSMUSG00000041890	Git2	1500036H07Rik|5830420E16Rik|6430510B20Rik|9630056M03Rik|B230104M05Rik|CAT2|mKIAA0148	G protein-coupled receptor kinase-interactor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150210547-1	chr4	150210447	150210647	+	749.0	f0_balb.idr	Intergenic	Intergenic	-9412.0	NM_009802	12353.0	Mm.232523	NM_009802	ENSMUSG00000028972	Car6	Ca6|DOC1	carbonic anhydrase 6	protein-coding	1.48680543288712	2.03161975192211	2.56481617709746	2.57852306771162	1.67815309564065	2.04618396354303	2.48781598603619	2.59184638730867	0.0211923954301467	0.981560773587689	0.998431161219273
Merged-chr9-20973887-4	chr9	20973788	20973988	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010333, intron 1 of 1)	intron (NM_010333, intron 1 of 1)	2905.0	NM_010333	14739.0	Mm.46493	NM_010333	ENSMUSG00000043895	S1pr2	1100001A16Rik|Edg5|Gpcr13|H218|LPb2|S1P2	sphingosine-1-phosphate receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-127070612-4	chr2	127070498	127070698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026678)	promoter-TSS (NM_026678)	-59.0	NM_026678	109778.0	Mm.22028	NM_026678	ENSMUSG00000001999	Blvra	0610006A11Rik|2500001N03Rik|Blvr	biliverdin reductase A	protein-coding	4.60709423922987	4.4436161655302	3.58718364652719	4.52385075981415	4.60728205710728	4.41688268610082	3.79545176488374	3.75643965550837	-0.197295647761161	0.658510987612226	0.988837901047746
Merged-chr1-71101712-2	chr1	71101612	71101812	+	848.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007525, intron 1 of 10)	URR1B|DNA|hAT-Charlie	1260.0	NM_007525	12021.0	Mm.10764	NM_007525	ENSMUSG00000026196	Bard1	-	BRCA1 associated RING domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-30152298-4	chr14	30152177	30152377	+	990.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083616, intron 8 of 46)	intron (NM_001083616, intron 8 of 46)	129644.0	NM_175343	218865.0	Mm.259916	NM_172264	ENSMUSG00000015970	Chdh	AU041472|D630034H06Rik	choline dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-86604553-2	chr3	86604453	86604653	+	694.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077687, intron 40 of 50)	intron (NM_001077687, intron 40 of 50)	-56270.0	NM_011839	23937.0	Mm.389466	NM_011839	ENSMUSG00000057777	Mab21l2	-	mab-21-like 2 (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141460830-4	chr7	141460757	141460957	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001025103)	promoter-TSS (NM_001025103)	-237.0	NM_001025103	213573.0	Mm.386851	NM_001025103	ENSMUSG00000048200	Cracr2b	6330520A15Rik|BC026645|Cracr2a|Efcab4|Efcab4a	calcium release activated channel regulator 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-79377970-1	chr15	79377870	79378070	+	698.0	f1_c57bl6.idr	intron (NM_172608, intron 2 of 8)	intron (NM_172608, intron 2 of 8)	-2670.0	NR_035464	100316695.0		NR_035464	ENSMUSG00000088901	Mir1943	mir-1943|mmu-mir-1943	microRNA 1943	ncRNA	0.787193001759469	0.381134533757478	0.371335924398351	1.4915120744647	0.352723242893669	0.794347574250831	0.902210333090047	0.365026422503337	-1.1054032107678	0.537972362715046	1
Merged-chr5-45424374-1	chr5	45424274	45424474	+	745.0	f1_c57bl6.idr	promoter-TSS (NR_131933)	promoter-TSS (NR_131933)	26.0	NR_131933	52401.0	Mm.33854	NR_131933	ENSMUSG00000029092	D5Ertd615e	4930435H24Rik	DNA segment, Chr 5, ERATO Doi 615, expressed	ncRNA	3.17375386055242	1.41747750272164	3.4428555134359	2.48960933019	3.4166068638514	3.38103413274816	1.67496024337738	1.33016334317287	-0.0825019803672055	0.957228210077513	0.998431161219273
Merged-chr1-131797349-3	chr1	131797266	131797466	+	941.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178079)	promoter-TSS (NM_178079)	-29.0	NM_178079	212933.0	Mm.23844	NM_178079	ENSMUSG00000042251	Pm20d1	4732466D17Rik|AI098026	peptidase M20 domain containing 1	protein-coding	1.47451179930689	1.16573544546708	0.904603231680115	1.10364152727834	1.06360514024118	1.93141327458133	1.62603307339769	2.13109344777937	2.00276210272646	0.105241320448266	0.505892575341078
Merged-chr11-115692181-4	chr11	115692061	115692261	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001313936, intron 2 of 5)	intron (NM_001313936, intron 2 of 5)	7373.0	NM_001313937	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115181285-2	chr11	115181193	115181393	+	691.75	f1_balb.idr|f1_c57bl6.idr	TTS (NM_012030)	TTS (NM_012030)	6023.0	NM_025400	66176.0	Mm.86823	NM_025400	ENSMUSG00000015542	Nat9	1110028N05Rik	N-acetyltransferase 9 (GCN5-related, putative)	protein-coding	2.18018789189251	0.977236291195203	1.53077700950533	1.33475537047519	2.13782162444908	0.981459949448386	1.54338660330049	1.34140497618489	-0.0403487794614208	0.974178881287908	0.998431161219273
Merged-chr18-60752183-4	chr18	60752089	60752289	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3524.0	NM_008306	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-41024420-4	chr8	41024342	41024542	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_015457)	TTS (NR_015457)	6974.0	NR_015457	78849.0	Mm.440930	NR_015457	ENSMUSG00000084960	B430010I23Rik	-	RIKEN cDNA B430010I23 gene	ncRNA	4.67940045806258	2.10910292408947	4.00215141438182	4.48958720740561	3.54200715905563	3.45370205832776	3.43263689616092	2.73590329679288	-1.13145702023832	0.0692808920845055	0.395265704300689
Merged-chr12-110445139-2	chr12	110445039	110445239	+	672.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2040.0	NM_001135001	26931.0	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-86884134-4	chr12	86884050	86884250	+	929.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_145836, exon 1 of 1)	5' UTR (NM_145836, exon 1 of 1)	664.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-79112952-3	chr11	79112886	79113086	+	906.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013571, intron 1 of 17)	intron (NM_013571, intron 1 of 17)	33487.0	NM_013571	16706.0	Mm.4745	NM_013571	ENSMUSG00000018334	Ksr1	AW492498|B-KSR1|D11Bhm183e|D11Bhm184e|Ksr|RSU2|hb|mKSR1	kinase suppressor of ras 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-3894227-2	chr16	3894127	3894327	+	656.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_153801)	TTS (NR_153801)	9608.0	NM_001290689	74763.0	Mm.28403	NM_029090	ENSMUSG00000005982	Naa60	1200013P24Rik|AI315146|HAT4|Nat15|NatF	N(alpha)-acetyltransferase 60, NatF catalytic subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-58713972-2	chr1	58713872	58714072	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_149258)	TTS (NR_149258)	686.0	NM_001355056	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-40018284-4	chr12	40018174	40018374	+	999.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TCTCCC)n|Simple_repeat|Simple_repeat	19102.0	NM_007487	11861.0	Mm.12723	NM_007487	ENSMUSG00000047446	Arl4a	AI467555|Arl4	ADP-ribosylation factor-like 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-139131825-1	chr4	139131725	139131925	+	1000.0	f1_balb.idr	promoter-TSS (NR_033745)	promoter-TSS (NR_033745)	-712.0	NM_001163006	433771.0	Mm.305990	NM_001163006	ENSMUSG00000050608	Minos1	2310028O11Rik	mitochondrial inner membrane organizing system 1	protein-coding	0.580267624205367	0.893422272163526	0.407456864196793	0.39584004463071	0.759213510897306	0.903450903272047	2.04347222501989	0.397889527944484	2.64733775634617	0.101542471524447	0.495499004853658
Merged-chr10-21376904-3	chr10	21376804	21377004	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178713)	promoter-TSS (NM_178713)	-396.0	NM_178713	237320.0	Mm.90181	NM_178713	ENSMUSG00000037542	Aldh8a1	Raldh4	aldehyde dehydrogenase 8 family, member A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-29663570-2	chr2	29663470	29663670	+	660.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_054050, intron 1 of 23)	intron (NM_054050, intron 1 of 23)	43850.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-137072331-4	chr5	137072224	137072424	+	848.033325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008871)	promoter-TSS (NM_008871)	-52.0	NM_008871	18787.0	Mm.250422	NM_008871	ENSMUSG00000037411	Serpine1	PAI-1|PAI1|Planh1	serine (or cysteine) peptidase inhibitor, clade E, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-57692006-2	chr3	57691906	57692106	+	854.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033349, intron 1 of 3)	intron (NM_001033349, intron 1 of 3)	531.0	NM_001033349	242037.0	Mm.291091	NM_001033349	ENSMUSG00000074591	Ankub1	Gm410	ankrin repeat and ubiquitin domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-137993409-4	chr4	137993303	137993503	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172703)	promoter-TSS (NM_172703)	-53.0	NM_001256198	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	5.95420125101461	4.9757102607716	5.03249097423308	5.62056654243335	5.46319378434311	5.95095750604916	5.7668027276404	5.00239063984202	0.13096416274624	0.682741504599009	0.995882295196263
Merged-chr10-75677822-2	chr10	75677722	75677922	+	628.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172549, intron 29 of 36)	intron (NM_172549, intron 29 of 36)	-33814.0	NM_027890	71733.0	Mm.247956	NM_027890	ENSMUSG00000006342	Susd2	1200011D11Rik	sushi domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81487166-2	chr10	81487066	81487266	+	767.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_134009, exon 14 of 14)	3' UTR (NM_134009, exon 14 of 14)	-4457.0	NM_001311124	319586.0	Mm.152689	NM_176954	ENSMUSG00000034818	Celf5	4930565A21Rik|Brunol5	CUGBP, Elav-like family member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-100126885-4	chr15	100126786	100126986	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159361, intron 2 of 37)	intron (NM_001159361, intron 2 of 37)	-27510.0	NM_172819	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-99988902-2	chr10	99988802	99989002	+	582.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26919.0	NM_001347156	17311.0	Mm.45124	NM_013598	ENSMUSG00000019966	Kitl	Clo|Con|Gb|Kitlg|Mgf|SCF|SF|SLF|Sl|blz|contrasted	kit ligand	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-88728556-2	chr9	88728522	88728722	+	986.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007536, intron 1 of 1)	intron (NM_007536, intron 1 of 1)	3228.0	NM_007536	12047.0	Mm.378888	NM_007536	ENSMUSG00000099974	Bcl2a1d	A1-d	B cell leukemia/lymphoma 2 related protein A1d	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-37011720-4	chr16	37011601	37011801	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159369)	promoter-TSS (NM_001159369)	-85.0	NM_029977	77782.0	Mm.259114	NM_029977	ENSMUSG00000034206	Polq	A430110D14Rik	polymerase (DNA directed), theta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-110398707-2	chr12	110398607	110398807	+	559.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48472.0	NM_001135001	26931.0	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-119354037-2	chr8	119353937	119354137	+	565.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9499.0	NM_024219	68196.0	Mm.358714	NM_024219	ENSMUSG00000031839	Hsbp1	0610007A03Rik|AA408769|Hsp25	heat shock factor binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52619695-4	chr13	52619636	52619836	+	995.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011518, intron 3 of 13)	intron (NM_011518, intron 3 of 13)	22854.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105384384-4	chr8	105384264	105384464	+	982.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301173, intron 15 of 15)	intron (NM_001301173, intron 15 of 15)	8983.0	NM_001081333	102075.0	Mm.32034	NM_175321	ENSMUSG00000014782	Plekhg4	4931414L13Rik|AI448583|mFLJ00068	pleckstrin homology domain containing, family G (with RhoGef domain) member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-11557319-3	chr11	11557217	11557417	+	836.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	68051.0	NM_028669	73862.0	Mm.159077	NM_028669	ENSMUSG00000020191	Spata48	4930415F15Rik	spermatogenesis associated 48	protein-coding	-1.50874880059862	-1.47511716453926	-1.4852876488768	-1.49364198752927	-1.50638792193216	-0.992828729615453	-1.48298527415345	-1.4921465649048	2.3185461113984	0.50391666537493	1
Merged-chr5-121830379-2	chr5	121830279	121830479	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001306128, intron 1 of 7)	B1_Mm|SINE|Alu	5725.0	NM_001306126	16923.0	Mm.65493	NM_008507	ENSMUSG00000042594	Sh2b3	AI429800|Lnk	SH2B adaptor protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67748808-4	chr10	67748699	67748899	+	994.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	163863.0	NM_178679	216049.0	Mm.268346	NM_178679	ENSMUSG00000037855	Zfp365	AI839779|AV340892|DBZ|Su48|Znf365|talanin	zinc finger protein 365	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-84577402-4	chr10	84577285	84577485	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146008, intron 1 of 9)	CpG	438.0	NM_146008	216198.0	Mm.296142	NM_146008	ENSMUSG00000020034	Tcp11l2	E430026E19Rik	t-complex 11 (mouse) like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-101045934-4	chr9	101045831	101046031	+	964.462524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16B2|LTR|ERVL	-11047.0	NM_025835	66904.0	Mm.335385	NM_025835	ENSMUSG00000032527	Pccb	1300012P06Rik|AI314687|R74805	propionyl Coenzyme A carboxylase, beta polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-119083011-4	chr4	119082918	119083118	+	852.4833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13907.0	NR_131914	433751.0	Mm.224312	NR_131914	ENSMUSG00000066060	Gm12866	-	predicted gene 12866	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-102682881-5	chr13	102682852	102683052	+	830.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10595.0	NM_001360519	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-73748387-6	chr15	73748315	73748515	+	888.2777710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_008975, exon 1 of 6)	5' UTR (NM_008975, exon 1 of 6)	389.0	NM_008975	19245.0	Mm.390807	NM_008975	ENSMUSG00000059895	Ptp4a3	AV088979|Prl-3|pPtp4a3	protein tyrosine phosphatase 4a3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-66213941-2	chr2	66213841	66214041	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001047604, intron 19 of 28)	RSINE1|SINE|B4	42676.0	NM_001047604	73668.0	Mm.250868	NM_001047604	ENSMUSG00000034848	Ttc21b	2410066K11Rik|Thm1|aln|mKIAA1992	tetratricopeptide repeat domain 21B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-58214052-2	chr19	58213950	58214150	+	820.0	f0_balb.idr|f1_balb.idr	Intergenic	L1M4b|LINE|L1	-82154.0	NR_040449	791347.0	Mm.452208	NR_040449		Gm10007	-	predicted gene 10007	ncRNA	1.35836320605416	1.98375843025101	1.19708856577591	1.16421238478145	2.37816615396375	3.05323860770854	2.78575463109411	3.11361506890332	3.55209717874559	0.000515767218255326	0.0114595834900508
Merged-chr17-84936531-1	chr17	84936431	84936631	+	593.0	f0_balb.idr	intron (NR_027929, intron 2 of 3)	intron (NR_027929, intron 2 of 3)	-20210.0	NM_001159497	19043.0	Mm.249695	NM_011151	ENSMUSG00000061130	Ppm1b	PP2CB	protein phosphatase 1B, magnesium dependent, beta isoform	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53441324-4	chr4	53441221	53441421	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133891, intron 1 of 15)	intron (NM_133891, intron 1 of 15)	908.0	NM_133891	100434.0	Mm.482207	NM_133891	ENSMUSG00000028412	Slc44a1	2210409B22Rik|4833416H08Rik|AW547365|CHTL1|CTL1|Cdw92	solute carrier family 44, member 1	protein-coding	3.1626701082388	3.37224763459508	3.42597258057305	2.75395528246013	4.14973967555285	2.82364057260467	2.86014660988174	2.63798946392249	0.164760302905654	0.802730442311861	0.998431161219273
Merged-chr18-53257084-2	chr18	53256984	53257184	+	793.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_029394, intron 1 of 6)	B1F|SINE|Alu	11422.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-83995538-4	chr3	83995424	83995624	+	942.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172681, intron 3 of 34)	intron (NM_172681, intron 3 of 34)	44637.0	NM_172681	229473.0	Mm.28838	NM_172681	ENSMUSG00000033767	Tmem131l	D930015E06Rik|Kiaa0922|mKIAA0922	transmembrane 131 like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16055688-1	chr7	16055588	16055788	+	558.0	f1_c57bl6.idr	Intergenic	Intergenic	-16157.0	NM_001347559	666528.0	Mm.290718	NM_001099277	ENSMUSG00000078796	Zfp541	EG666528|Znf541	zinc finger protein 541	protein-coding	-0.531872482538014	0.0870616926683007	-0.524336274133002	-0.36439464158119	-0.531174147043732	-0.519822155114579	-0.194180945859207	-0.526677667469075	-1.36927638867517	0.603615091934488	1
Merged-chr6-77141159-2	chr6	77141059	77141259	+	579.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145732, intron 9 of 18)	Lx5|LINE|L1	-101318.0	NR_155299	74342.0	Mm.292568	NM_028880	ENSMUSG00000060780	Lrrtm1	4632401D06Rik|AW125451	leucine rich repeat transmembrane neuronal 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4557460-2	chr16	4557360	4557560	+	685.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_031182, intron 1 of 6)	intron (NM_031182, intron 1 of 6)	2260.0	NM_031182	83383.0	Mm.273210	NM_031182	ENSMUSG00000005718	Tfap4	AI642933|AP-4|D930048N17Rik|Tcfap4|bHLHc41	transcription factor AP4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153162470-2	chr2	153162370	153162570	+	854.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133847, intron 1 of 17)	intron (NM_133847, intron 1 of 17)	1169.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-111507152-3	chr10	111507067	111507267	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009344, exon 1 of 2)	exon (NM_009344, exon 1 of 2)	881.0	NM_009344	21664.0	Mm.3117	NM_009344	ENSMUSG00000020205	Phlda1	DT1P1B11|TDAG51|Tdag	pleckstrin homology like domain, family A, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153292625-6	chr2	153292533	153292733	+	983.508301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008444, intron 1 of 8)	intron (NM_008444, intron 1 of 8)	1217.0	NM_008444	16569.0	Mm.315560	NM_008444	ENSMUSG00000027475	Kif3b	AI854312|AW549267|mKIAA0359	kinesin family member 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-45411383-2	chr9	45411283	45411483	+	560.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5306.0	NM_007503	11936.0	Mm.22742	NM_007503	ENSMUSG00000059412	Fxyd2	Atp1g1	FXYD domain-containing ion transport regulator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-50378503-4	chr11	50378397	50378597	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347487, intron 2 of 12)	CpG-1904	778.0	NM_001347487	59013.0	Mm.21740	NM_021510	ENSMUSG00000007850	Hnrnph1	AI642080|E430005G16Rik|Hnrnph|Hnrph1	heterogeneous nuclear ribonucleoprotein H1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-179434935-4	chr1	179434809	179435009	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027188, intron 1 of 11)	intron (NM_027188, intron 1 of 11)	83132.0	NM_027188	69726.0	Mm.222338	NM_027188	ENSMUSG00000055067	Smyd3	2410008A19Rik|Zmynd1	SET and MYND domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-125391152-2	chr10	125391052	125391252	+	890.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62189.0	NM_001358496	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52533855-4	chr13	52533747	52533947	+	934.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3011.0	NM_001024474	68203.0	Mm.29362	NM_001024474	ENSMUSG00000047842	Diras2	2900052J15Rik|AI414999	DIRAS family, GTP-binding RAS-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-137722898-3	chr4	137722754	137722954	+	775.56665	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081155, intron 18 of 24)	intron (NM_001081155, intron 18 of 24)	-1607.0	NR_138592	110351.0	Mm.180763	NM_029563	ENSMUSG00000041351	Rap1gap	1300019I11Rik|2310004O14Rik|AI427470|ARPP-90|Gap|Rap1GAP1|Rap1ga1	Rap1 GTPase-activating protein	protein-coding	2.90630491802166	2.83739781735845	2.61916550560272	4.05184730349958	3.21817837649726	2.25348043215883	2.50285411517252	2.79135788049984	-0.942797045500354	0.193351265739011	0.67280408536446
Merged-chr6-112739809-3	chr6	112739730	112739930	+	710.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080448, intron 15 of 21)	intron (NM_080448, intron 15 of 21)	-43160.0	NM_001167730	58186.0	Mm.103812	NM_021385	ENSMUSG00000030254	Rad18	2810024C04Rik|Rad18sc	RAD18 E3 ubiquitin protein ligase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56111951-3	chr17	56111853	56112053	+	727.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_025874, exon 9 of 9)	3' UTR (NM_025874, exon 9 of 9)	-2151.0	NM_020568	57435.0	Mm.12966	NM_020568	ENSMUSG00000002831	Plin4	S3-12|mKIAA1881	perilipin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-57178017-2	chr16	57177917	57178117	+	579.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_001358434, exon 12 of 15)	exon (NM_001358434, exon 12 of 15)	-10685.0	NM_023175	52633.0	Mm.383203	NM_023175	ENSMUSG00000022751	Nit2	1190017B19Rik|D16Ertd502e	nitrilase family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-42268797-4	chr10	42268607	42268807	+	796.950012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019740, intron 2 of 3)	intron (NM_019740, intron 2 of 3)	8035.0	NM_019740	56484.0	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-36257693-7	chr17	36257583	36257783	+	857.119019	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026308, exon 2 of 5)	exon (NM_026308, exon 2 of 5)	163.0	NM_026308	67676.0	Mm.27131	NM_026308	ENSMUSG00000024446	Rpp21	0610037N01Rik	ribonuclease P 21 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-51173147-4	chr6	51173035	51173235	+	999.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	96775.0	NR_029719	387166.0		NR_029719	ENSMUSG00000065505	Mir148a	Mirn148|Mirn148a|mir-148a	microRNA 148a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100847215-2	chr7	100847032	100847232	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177073, exon 11 of 11)	3' UTR (NM_177073, exon 11 of 11)	16281.0	NM_001358914	320100.0	Mm.40336	NM_177073	ENSMUSG00000008318	Relt	E430021K24Rik|Tnfrsf19l	RELT tumor necrosis factor receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-6452187-2	chr4	6452087	6452287	+	551.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010945, intron 1 of 30)	MER53|DNA|hAT	2084.0	NM_010945	18201.0	Mm.3059	NM_010945	ENSMUSG00000028245	Nsmaf	AA959567|C630007J05|Fan	neutral sphingomyelinase (N-SMase) activation associated factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-145881218-4	chr2	145881164	145881364	+	971.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028724, intron 11 of 12)	intron (NM_028724, intron 11 of 12)	-21977.0	NM_026425	67877.0	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	4.42290625674895	4.14876094360509	4.361689032863	4.02682302084365	4.38022766200264	4.30753709744311	1.89528448460632	4.61874071430292	-0.161949399027726	0.772825788208645	0.998431161219273
Merged-chr4-19681705-4	chr4	19681592	19681792	+	806.491089	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_074090, intron 2 of 24)	intron (NR_074090, intron 2 of 24)	27312.0	NM_177327	107568.0	Mm.78312	NM_177327	ENSMUSG00000041058	Wwp1	8030445B08Rik|AIP5|SDRP1|Tiul1	WW domain containing E3 ubiquitin protein ligase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-71011135-4	chr14	71011056	71011256	+	944.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	121049.0	NM_001302094	14586.0	Mm.32619	NM_008115	ENSMUSG00000022103	Gfra2	-	glial cell line derived neurotrophic factor family receptor alpha 2	protein-coding	3.38499974110235	2.35689517230458	3.11404670983079	3.25502262452484	3.11889973569865	2.37434971768058	2.10581325843291	2.95618085608609	-0.68009263926955	0.339560764136562	0.8404816361953
Merged-chr4-116169242-4	chr4	116169144	116169344	+	774.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1646.0	NM_133681	66805.0	Mm.45994	NM_133681	ENSMUSG00000028699	Tspan1	9030418M05Rik	tetraspanin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-85151098-3	chr16	85150965	85151165	+	823.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198825, intron 1 of 15)	intron (NM_001198825, intron 1 of 15)	22642.0	NM_001198825	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	1.81097447052013	0.693387300591466	0.678915181936269	0.667520316107932	1.35751154163561	1.56905136954716	1.38317435635342	0.6695260485342	0.687305808734503	0.66402400087889	0.99179745482574
Merged-chr13-113871065-2	chr13	113870965	113871165	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172595, intron 1 of 4)	intron (NM_172595, intron 1 of 4)	76557.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-52307790-4	chr12	52307698	52307898	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029760, intron 10 of 10)	intron (NM_029760, intron 10 of 10)	172811.0	NR_136881	102638611.0	Mm.363799	NR_136881	ENSMUSG00000111982	Gm35135	-	predicted gene, 35135	ncRNA	6.14078321785961	6.28421221467286	6.01455724157607	6.46301724284825	6.70941005043218	6.55399653320382	5.8258519095532	6.61836599136385	0.254951541381626	0.275468048405394	0.77982362793126
Merged-chr10-53499645-3	chr10	53499527	53499727	+	566.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_037973, exon 4 of 4)	non-coding (NR_037973, exon 4 of 4)	19362.0	NR_037973	100502868.0	Mm.297722	NR_037973	ENSMUSG00000112739	Gm20597	B230314j19	predicted gene, 20597	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-87639450-3	chr17	87639372	87639572	+	818.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008532, intron 2 of 9)	intron (NM_008532, intron 2 of 9)	3493.0	NM_008532	17075.0	Mm.4259	NM_008532	ENSMUSG00000045394	Epcam	CD326|EGP|EGP-2|Egp314|Ep-CAM|EpCAM1|GA733-2|Ly74|TROP1|Tacsd1|Tacstd1|gp40	epithelial cell adhesion molecule	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-39478090-2	chr1	39477990	39478190	+	906.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357521, intron 1 of 19)	intron (NM_001357521, intron 1 of 19)	657.0	NM_018775	54610.0	Mm.387293	NM_018775	ENSMUSG00000003134	Tbc1d8	AD3|HBLP1|VRP	TBC1 domain family, member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-41230499-4	chr13	41230395	41230595	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1H1|LTR|ERVL-MaLR	-10092.0	NM_019423	54326.0	Mm.2567	NM_019423	ENSMUSG00000021364	Elovl2	AI317360|Ssc2	elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-4536699-4	chr12	4536607	4536807	+	937.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12594.0	NR_136891	102634330.0	Mm.402324	NR_136891	ENSMUSG00000112422	Gm31938	-	predicted gene, 31938	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-12455311-3	chr5	12455203	12455403	+	964.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028882, intron 2 of 17)	intron (NM_028882, intron 2 of 17)	72137.0	NM_028882	108151.0	Mm.89313	NM_028882	ENSMUSG00000040254	Sema3d	4631426B19Rik	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-51169033-2	chr6	51168933	51169133	+	766.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	100877.0	NR_029719	387166.0		NR_029719	ENSMUSG00000065505	Mir148a	Mirn148|Mirn148a|mir-148a	microRNA 148a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-93489980-1	chr10	93489880	93490080	+	713.0	f1_balb.idr	intron (NM_010401, intron 2 of 19)	intron (NM_010401, intron 2 of 19)	1212.0	NM_010401	15109.0	Mm.13000	NM_010401	ENSMUSG00000020017	Hal	Hsd|his|histidase	histidine ammonia lyase	protein-coding	0.124775985331804	0.137818563535581	0.133498341593055	0.130196553410251	0.549671329329882	0.13879872429178	0.728239747540963	0.60616040891203	4.11778179078086	0.0526077774927022	1
Merged-chr15-98851480-2	chr15	98851380	98851580	+	934.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001033276, exon 34 of 55)	exon (NM_001033276, exon 34 of 55)	19725.0	NM_001033276	381022.0	Mm.264889	NM_001033276	ENSMUSG00000048154	Kmt2d	ALR|BC032281|BC058659|C430014K11Rik|KMT2B|Mll2|Mll4	lysine (K)-specific methyltransferase 2D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-21997859-1	chr10	21997759	21997959	+	576.0	f0_c57.idr	intron (NM_011361, intron 9 of 11)	intron (NM_011361, intron 9 of 11)	3193.0	NM_011361	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-90433621-4	chr3	90433541	90433741	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145540)	promoter-TSS (NM_145540)	-5.0	NM_178876	229543.0	Mm.268564	NM_145540	ENSMUSG00000027933	Ints3	C77668	integrator complex subunit 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-107133063-2	chr3	107132929	107133129	+	753.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME1|LINE|L1	31462.0	NM_008417	16490.0	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	0.799319649892173	0.513690994523316	1.27736100186343	0.493407682902904	1.15277443602148	0.516229828355538	1.57581692598968	0.49497248656811	0.898886223151809	0.597276343137437	0.971902489067841
Merged-chr9-118864684-2	chr9	118864584	118864784	+	698.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 9 of 13)	intron (NM_001113514, intron 9 of 13)	-61852.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	-0.886101355436339	-1.00396555740196	-1.0149952784261	-0.729136405357512	-1.02076976304248	-1.00157537084445	-1.01249839135084	-0.724971213481921	-0.412084047333427	0.891480597011167	1
Merged-chr5-100616907-4	chr5	100616803	100617003	+	880.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44698.0	NM_139198	231507.0	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	1.98332744674903	1.08712191273767	3.19984774123335	1.02688390845507	1.88561694543384	1.09439383134792	2.30983165240259	2.11882278610562	-0.553340035492936	0.641097144443508	0.982599433509505
Merged-chr13-37959459-4	chr13	37959364	37959564	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34744.0	NM_025965	107513.0	Mm.426670	NM_025965	ENSMUSG00000021427	Ssr1	2510001K09Rik|6330400D04|AI159733|AI452176|SSR|TRAPA	signal sequence receptor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-58215965-2	chr15	58215865	58216065	+	942.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1073.0	NM_026346	67731.0	Mm.25683	NM_026346	ENSMUSG00000022358	Fbxo32	4833442G10Rik|AI430017|ATROGIN1|Gm20361|MAFbx	F-box protein 32	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75532069-4	chr11	75531961	75532161	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199283)	promoter-TSS (NM_001199283)	-51.0	NM_001199283	215113.0	Mm.11186	NM_173388	ENSMUSG00000038178	Slc43a2	7630402D21Rik|BC042513|Lat4	solute carrier family 43, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-11015801-4	chr8	11015658	11015858	+	945.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_046017, intron 1 of 4)	intron (NR_046017, intron 1 of 4)	-7328.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-38542183-2	chr18	38542083	38542283	+	776.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	59085.0	NM_011898	24066.0	Mm.42038	NM_011898	ENSMUSG00000024427	Spry4	A030006O18Rik|sprouty4	sprouty RTK signaling antagonist 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52099268-2	chr13	52099168	52099368	+	721.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045061, intron 2 of 7)	intron (NR_045061, intron 2 of 7)	2527.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80183536-2	chr10	80183436	80183636	+	770.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007909, intron 1 of 3)	intron (NM_007909, intron 1 of 3)	4054.0	NM_007909	13637.0	Mm.1478	NM_007909	ENSMUSG00000003070	Efna2	CEK7L|Elf1|Epl6|Eplg6|Lerk6	ephrin A2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-145110842-4	chr7	145110749	145110949	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	97270.0	NR_033626	100040049.0	Mm.102235	NR_033626	ENSMUSG00000109305	1810010D01Rik	Gm2572	RIKEN cDNA 1810010D01 gene	ncRNA	5.36071999506083	5.84740774296009	5.35326464133077	5.45117214525684	5.22287402222071	5.88249558381579	5.72220676540085	5.18130681565293	0.015412528699954	0.957147828907625	0.998431161219273
Merged-chr6-71271561-4	chr6	71271450	71271650	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145568)	promoter-TSS (NM_145568)	-121.0	NR_106192	102465900.0		NR_106192	ENSMUSG00000098623	Mir8112	Gm27739|mmu-mir-8112	microRNA 8112	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-88254736-1	chr2	88254636	88254836	+	726.0	f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	20311.0	NM_207566	404329.0	Mm.377943	NM_207566	ENSMUSG00000075132	Olfr1173	-	olfactory receptor 1173	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-63411165-4	chr14	63411057	63411257	+	940.68335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007549, intron 1 of 12)	intron (NM_007549, intron 1 of 12)	6030.0	NM_007549	12143.0	Mm.3962	NM_007549	ENSMUSG00000014453	Blk	-	B lymphoid kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-42425044-1	chr8	42424944	42425144	+	667.0	f1_c57bl6.idr	Intergenic	Lx4A|LINE|L1	597777.0	NR_045497	69966.0	Mm.416903	NR_045497	ENSMUSG00000102046	2810404M03Rik	-	RIKEN cDNA 2810404M03 gene	ncRNA	1.39017329092543	0.299498422164442	0.290855886291811	0.284124734818907	0.582472378559174	0.301434324547455	0.66361518507999	0.765841847235996	-0.521110282061005	0.778810512133597	1
Merged-chr14-65343745-4	chr14	65343604	65343804	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-14972.0	NM_199029	380912.0	Mm.270087	NM_199029	ENSMUSG00000034522	Zfp395	BC053701|Gm910	zinc finger protein 395	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-12755516-3	chr8	12755421	12755621	+	827.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1495.0	NM_015804	50770.0	Mm.257837	NM_015804	ENSMUSG00000031441	Atp11a	4930558F19Rik|AU040868|Atpc1h|Ih	ATPase, class VI, type 11A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-70622549-4	chr18	70622456	70622656	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010773, intron 5 of 6)	intron (NM_010773, intron 5 of 6)	54264.0	NM_010773	17191.0	Mm.322	NM_010773	ENSMUSG00000024513	Mbd2	MBD2a	methyl-CpG binding domain protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150587840-2	chr4	150587740	150587940	+	946.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 12 of 22)	intron (NM_001085492, intron 12 of 22)	64334.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-40596532-1	chr19	40596432	40596632	+	590.0	f0_balb.idr	TTS (NM_026260)	TTS (NM_026260)	-8069.0	NM_153554	56454.0	Mm.233117	NM_019698	ENSMUSG00000025007	Aldh18a1	2810433K04Rik|AI429789|Pycs	aldehyde dehydrogenase 18 family, member A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150465984-2	chr4	150465871	150466071	+	585.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 4 of 22)	intron (NM_001085492, intron 4 of 22)	184055.0	NM_001085492	68703.0	Mm.291274	NM_001085492	ENSMUSG00000039852	Rere	1110033A15Rik|AI414665|ARG|ARP|ATN1L|AW742570|Atr2|DNB1|eye<m03Jus>|eyes3|mKIAA0458	arginine glutamic acid dipeptide (RE) repeats	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-57902726-4	chr16	57902625	57902825	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-147988.0	NM_007739	12837.0	Mm.130388	NM_007739	ENSMUSG00000068196	Col8a1	Col8a-1	collagen, type VIII, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-51551996-2	chr5	51551900	51552100	+	605.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_132764, intron 1 of 12)	intron (NR_132764, intron 1 of 12)	1921.0	NR_027710	19017.0	Mm.259072	NM_008904	ENSMUSG00000029167	Ppargc1a	A830037N07Rik|Gm11133|PGC-1|PPARGC-1-alpha|Pgc-1alpha|Pgc1|Pgco1|Ppargc1	peroxisome proliferative activated receptor, gamma, coactivator 1 alpha	protein-coding	0.349771008959914	0.894827091747028	0.96793057547303	0.360328099402607	0.351347837455779	0.905024841218287	0.979769474538199	0.361433352888149	0.0402392161014669	0.982690957169172	1
Merged-chr10-59578236-4	chr10	59578125	59578325	+	920.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033259, intron 1 of 7)	intron (NM_001033259, intron 1 of 7)	38467.0	NM_001033259	215999.0	Mm.296470	NM_001033259	ENSMUSG00000009647	Mcu	2010012O16Rik|AV064928|C10orf42|Ccdc109a|D130073L02Rik|Gm64	mitochondrial calcium uniporter	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-116513088-4	chr3	116512983	116513183	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357344)	promoter-TSS (NM_001357344)	13.0	NM_010022	13171.0	Mm.3636	NM_010022	ENSMUSG00000000340	Dbt	BCKAD-E2|D3Wsu60e	dihydrolipoamide branched chain transacylase E2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-17070157-4	chr16	17070049	17070249	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291053)	promoter-TSS (NM_001291053)	10.0	NM_001291047	106369.0	Mm.237941	NM_023249	ENSMUSG00000022773	Ypel1	0610009L05Rik|1700016N17Rik|1700019O22Rik|4921520K19Rik|4930511F14Rik|AV118478|DGL-1|Dgl1|Ppil2|mdgl-1	yippee like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-154928995-4	chr4	154928885	154929085	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178931)	promoter-TSS (NM_178931)	-908.0	NM_178931	230979.0	Mm.215147	NM_178931	ENSMUSG00000042333	Tnfrsf14	Atar|HveA|Hvem|Tnfrs14	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-11324252-4	chr19	11324168	11324368	+	778.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027836, intron 5 of 6)	intron (NM_027836, intron 5 of 6)	10427.0	NM_001276398	109225.0	Mm.491251	NM_027836	ENSMUSG00000024672	Ms4a7	9130422I10Rik|A430103C15Rik|CD20l4|CFFMA	membrane-spanning 4-domains, subfamily A, member 7	protein-coding	1.52923489048766	0.607637694294057	0.593653537426042	0.582638016605427	1.54619161557696	0.610746647276813	1.72114915211147	0.797236949425625	1.29910552562597	0.42607409206885	0.902023751857747
Merged-chr12-104174463-2	chr12	104174353	104174553	+	810.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20581.0	NM_008458	16625.0	Mm.422814	NM_008458	ENSMUSG00000066361	Serpina3c	1A1|Kalbp|Klkbp|spi2	serine (or cysteine) peptidase inhibitor, clade A, member 3C	protein-coding	3.13616603301358	3.19636268833765	2.91051634136691	2.02967858492626	2.61262743712216	3.03149754620008	2.8293285687508	2.63293131660858	-0.213511604852718	0.762407842481258	0.998431161219273
Merged-chr6-50306838-4	chr6	50306751	50306951	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027881, intron 18 of 21)	intron (NM_027881, intron 18 of 21)	-45082.0	NM_018769	54722.0	Mm.248361	NM_018769	ENSMUSG00000029821	Gsdme	2310037D07Rik|4932441K13Rik|Dfna5|Dfna5h|EG14210|Fin15	gasdermin E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-57524821-3	chr11	57524708	57524908	+	918.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145426, intron 1 of 2)	intron (NM_145426, intron 1 of 2)	6143.0	NM_145426	216760.0	Mm.30501	NM_145426	ENSMUSG00000020522	Mfap3	2610509F16Rik|2700079M14Rik|AW536327	microfibrillar-associated protein 3	protein-coding	0.333809235445583	0.177351337343576	1.29064660763201	0.158224615262602	0.146066027075477	0.179733119797672	1.30818950508483	0.159706422347916	-0.0923259845828521	0.962971986889587	1
Merged-chr14-55142641-2	chr14	55142541	55142741	+	560.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-25706.0	NM_177049	319984.0	Mm.19047	NM_177049	ENSMUSG00000022208	Jph4	9330157P13Rik|JP-4|JPHL1	junctophilin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-68873280-4	chr2	68873191	68873391	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347161, intron 1 of 10)	intron (NM_001347161, intron 1 of 10)	11850.0	NM_001347161	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-181150945-4	chr1	181150834	181151034	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030131)	promoter-TSS (NM_030131)	3.0	NM_030131	98417.0	Mm.38229	NM_030131	ENSMUSG00000062169	Cnih4	AI647760|AW050376|CNIH-4|D530030D03Rik|E430023H19Rik|HSPC163	cornichon family AMPA receptor auxiliary protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-113635384-4	chr8	113635265	113635465	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173015)	promoter-TSS (NM_173015)	-221.0	NM_001048143	270096.0	Mm.74689	NM_173015	ENSMUSG00000078908	Mon1b	5031407H10|5033413H12Rik	MON1 homolog B, secretory traffciking associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-78142845-4	chr18	78142756	78142956	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001171011)	promoter-TSS (NM_001171011)	-737.0	NM_001171011	108052.0	Mm.33832	NM_028122	ENSMUSG00000059336	Slc14a1	2610507K20Rik|3021401A05Rik|UT-B|Utb1	solute carrier family 14 (urea transporter), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34262291-1	chr17	34262191	34262391	+	974.0	f1_balb.idr	promoter-TSS (NM_207105)	promoter-TSS (NM_207105)	-936.0	NM_207105	14961.0	Mm.254067	NM_207105	ENSMUSG00000073421	H2-Ab1	AI845868|Abeta|H-2Ab|H2-Ab|I-Abeta|IAb|Ia-2|Ia2|Rmcs1	histocompatibility 2, class II antigen A, beta 1	protein-coding	2.48490164508992	2.08539243029307	1.8804019794564	1.09229782068213	1.27694109416531	1.41158966009948	2.51514041261736	1.69169760707178	-0.392354665289424	0.723243995325951	0.998431161219273
Merged-chr10-75922323-2	chr10	75922223	75922423	+	556.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161853)	promoter-TSS (NM_001161853)	-709.0	NM_001161853	20587.0	Mm.279751	NM_011418	ENSMUSG00000000902	Smarcb1	AU020204|Baf47|Ini1|SNF5/INI1|Snf5	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105121153-4	chr8	105121054	105121254	+	873.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10646.0	NM_146213	234677.0	Mm.120297	NM_146213	ENSMUSG00000060560	Ces4a	Ces8	carboxylesterase 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5807924-4	chr19	5807825	5808025	+	995.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5253.0	NR_002847	72289.0	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-95138972-2	chr8	95138872	95139072	+	640.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010631, intron 1 of 19)	intron (NM_010631, intron 1 of 19)	3568.0	NM_010631	16582.0	Mm.378951	NM_010631	ENSMUSG00000031788	Kifc3	AI325457|BB123200	kinesin family member C3	protein-coding	-1.36228443970301	-1.47756677603243	-1.33846019580931	-1.4947625916242	-1.35848085293746	-1.47552090798654	-1.48487041191896	-1.4933744535731	-0.636205087908397	0.844685658509124	1
Merged-chr9-116330988-3	chr9	116330901	116331101	+	695.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	141821.0	NR_152204	100043817.0	Mm.404276	NR_152204		Gm4668	-	predicted gene 4668	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-27485967-2	chr7	27485867	27486067	+	669.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018820)	promoter-TSS (NM_018820)	-986.0	NM_018820	55942.0	Mm.153684	NM_018820	ENSMUSG00000008384	Sertad1	1110032C13Rik|AV000455|AW456625|Sei-1|Sei1|TRIP-Br1	SERTA domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16950318-4	chr7	16950240	16950440	+	878.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5658.0	NM_001099636	434128.0	Mm.483018	NM_001099636	ENSMUSG00000070802	Pnmal2	EG434128	PNMA-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-36552601-4	chr3	36552494	36552694	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019393)	promoter-TSS (NM_019393)	-12.0	NM_019393	50911.0	Mm.116711	NM_019393	ENSMUSG00000027714	Exosc9	PM/Scl-75|Pmscl1|RRP45|p5|p6	exosome component 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153333214-2	chr2	153333114	153333314	+	623.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008444, exon 9 of 9)	3' UTR (NM_008444, exon 9 of 9)	12596.0	NR_040318	72326.0	Mm.400102	NR_040318	ENSMUSG00000073236	2500004C02Rik	-	RIKEN cDNA 2500004C02 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-128786605-2	chr6	128786505	128786705	+	764.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159904, intron 1 of 5)	Tigger7|DNA|TcMar-Tigger	2036.0	NM_001159904	17059.0	Mm.480764	NM_008527	ENSMUSG00000030325	Klrb1c	AI462337|CD161|Klrb1b|Ly-59|Ly55c|Ly59|NK-RP1|NK1.1|NKR-P1.9|NKRP1|NKRP140|Nk-1|Nk-1.2|Nk1|Nk1.2|Nkrp1b|Nkrp1c|ly-55c	killer cell lectin-like receptor subfamily B member 1C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-92097880-2	chr5	92097780	92097980	+	691.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359197, intron 1 of 10)	intron (NM_001359197, intron 1 of 10)	-14136.0	NM_001080795	23881.0	Mm.290530	NM_011816	ENSMUSG00000029405	G3bp2	AA409541|E430034L04Rik|G3BP|mKIAA0660	GTPase activating protein (SH3 domain) binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28954851-1	chr17	28954751	28954951	+	589.0	f1_c57bl6.idr	intron (NM_025888, intron 1 of 7)	intron (NM_025888, intron 1 of 7)	1635.0	NM_025888	66989.0	Mm.435	NM_025888	ENSMUSG00000005936	Kctd20	2410004N11Rik|AI451943|AW541186|D17Ertd562e	potassium channel tetramerisation domain containing 20	protein-coding	-1.0197847170788	-0.997907469650695	-1.01122437597739	-0.133164474989291	-1.01910344542556	-0.995021640496898	-1.0082097202833	-1.01474285911258	-3.16350991712545	0.326819850740887	1
Merged-chr2-91922971-2	chr2	91922871	91923071	+	859.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007699, intron 1 of 1)	intron (NM_007699, intron 1 of 1)	782.0	NM_007699	12672.0	Mm.330405	NM_007699	ENSMUSG00000040495	Chrm4	Chrm-4|M4	cholinergic receptor, muscarinic 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-43495582-3	chr7	43495485	43495685	+	697.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028737, intron 7 of 7)	intron (NM_028737, intron 7 of 7)	-5562.0	NM_001164518	210094.0	Mm.228087	NM_001164518	ENSMUSG00000013367	Iglon5	A230106M20Rik|Gm1431	IgLON family member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-117289532-2	chr2	117289432	117289632	+	616.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011246, intron 10 of 16)	intron (NM_011246, intron 10 of 16)	39793.0	NM_026620	68215.0	Mm.219389	NM_026620	ENSMUSG00000027349	Fam98b	2610510H03Rik	family with sequence similarity 98, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83660521-3	chr6	83660414	83660614	+	915.355591	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4398.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	2.20679404867312	1.97677982009801	1.90913921294402	2.036109579761	2.63849553398094	3.29242456389681	2.27801099166542	3.38569385288264	1.96823792743432	0.0133870512055375	0.13422103651591
Merged-chr5-104958380-4	chr5	104958277	104958477	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030239, intron 10 of 15)	intron (NM_030239, intron 10 of 15)	24340.0	NM_030239	27405.0	Mm.389663	NM_030239	ENSMUSG00000029299	Abcg3	Abcp2|Mxr2	ATP binding cassette subfamily G member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118685228-2	chr9	118685095	118685295	+	664.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 13 of 27)	MTD|LTR|ERVL-MaLR	-26497.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	1.63062492644	1.74849895268651	1.96654156732559	0.876594611340372	1.19481518030249	0.908125212348283	1.11040583686065	1.52538885666202	-1.5001451568784	0.247385093533251	0.746761074860435
Merged-chr13-69534826-4	chr13	69534735	69534935	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001169131)	promoter-TSS (NM_001169131)	-971.0	NM_001169131	210106.0	Mm.315959	NM_198600	ENSMUSG00000034575	Papd7	LAK-1|POLK|Pols|TRF4|TRF4-1	PAP associated domain containing 7	protein-coding	6.98805368475164	6.45113178922226	6.15152287295608	6.54829287013842	7.08251144053679	6.97491745760683	5.88989657702381	6.61229537075316	0.149852311620031	0.55797118192068	0.960321604678676
Merged-chr10-42903266-3	chr10	42903145	42903345	+	803.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359265, intron 1 of 6)	intron (NM_001359265, intron 1 of 6)	42733.0	NM_001359264	268297.0	Mm.98731	NM_172938	ENSMUSG00000044770	Scml4	9330161D17|mFLJ00197	Scm polycomb group protein like 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-80799946-2	chr15	80799846	80800046	+	997.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177124, intron 1 of 21)	intron (NM_177124, intron 1 of 21)	1336.0	NM_177124	213988.0	Mm.131328	NM_144812	ENSMUSG00000047888	Tnrc6b	2700090M07Rik|A730065C02Rik|AI848765|D230019K20Rik	trinucleotide repeat containing 6b	protein-coding	1.28440543991002	1.56315765740926	1.38794325736841	1.34975382953377	1.29429821908906	0.91878237461873	1.39871882918392	1.35648387693542	-0.580306243779213	0.635751148354386	0.982417279970648
Merged-chr16-17013332-2	chr16	17013232	17013432	+	773.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038663, intron 1 of 7)	Lx8|LINE|L1	29950.0	NM_001038663	26413.0	Mm.196581	NM_011949	ENSMUSG00000063358	Mapk1	9030612K14Rik|AA407128|AU018647|C78273|ERK|Erk2|MAPK2|PRKM2|Prkm1|p41mapk|p42mapk	mitogen-activated protein kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-95140988-6	chr8	95140914	95141114	+	987.3110960000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010631, intron 1 of 19)	intron (NM_010631, intron 1 of 19)	1526.0	NM_010631	16582.0	Mm.378951	NM_010631	ENSMUSG00000031788	Kifc3	AI325457|BB123200	kinesin family member C3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167658936-2	chr2	167658836	167659036	+	723.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145538, intron 1 of 5)	L2a|LINE|L2	2608.0	NM_145538	407243.0	Mm.4863	NM_145538	ENSMUSG00000090213	Tmem189	AI840826|Kua	transmembrane protein 189	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-89291436-4	chr12	89291330	89291530	+	677.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198587, intron 7 of 19)	intron (NM_001198587, intron 7 of 19)	338040.0	NM_172544	18191.0	Mm.425766	NM_172544	ENSMUSG00000066392	Nrxn3	-	neurexin III	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-10351330-3	chr2	10351248	10351448	+	856.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19103.0	NM_001198808	353282.0	Mm.329991	NM_177386	ENSMUSG00000061186	Sfmbt2	D2Wsu23e|D330030P06Rik	Scm-like with four mbt domains 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-64527467-4	chr18	64527354	64527554	+	997.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10897.0	NM_001142950	70223.0	Mm.29192	NM_027350	ENSMUSG00000024587	Nars	3010001M15Rik|AA960128|ASNRS|C78150	asparaginyl-tRNA synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-88812395-2	chr6	88812295	88812495	+	583.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166249, intron 5 of 7)	intron (NM_001166249, intron 5 of 7)	29540.0	NM_001362152	80283.0	Mm.166858	NM_030251	ENSMUSG00000030083	Abtb1	AI847549|BC003234|BPOZ|EF1ABP	ankyrin repeat and BTB (POZ) domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191281368-4	chr1	191281256	191281456	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36762.0	NM_025424	66208.0	Mm.46444	NM_025424	ENSMUSG00000037499	Nenf	1110060M21Rik|SCIRP10|Spuf	neuron derived neurotrophic factor	protein-coding	5.05736903933917	4.74933605185855	5.38184106959496	4.22981568675161	4.34537312837411	3.96365915955057	4.32253943046497	3.19831808601947	-1.12281092175636	0.00925767241736771	0.103036691710184
Merged-chr1-183804433-4	chr1	183804312	183804512	+	923.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151520, intron 2 of 2)	intron (NR_151520, intron 2 of 2)	55435.0	NR_151520	102637191.0	Mm.417076	NR_151520	ENSMUSG00000103305	Gm34068	-	predicted gene, 34068	ncRNA	4.18064490882886	3.42435355916617	3.97295708362638	4.24952704597021	3.41983277798086	4.57503569385802	3.62567357496082	3.59629727021832	-0.167644365298506	0.736938095192914	0.998431161219273
Merged-chr12-54519536-4	chr12	54519437	54519637	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	126475.0	NR_035439	100316682.0		NR_035439	ENSMUSG00000106344	Mir1892	Mirn1892|mir-1892|mmu-mir-1892	microRNA 1892	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-55318695-5	chr13	55318610	55318810	+	990.919983	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008739)	TTS (NM_008739)	3270.0	NM_009000	19336.0	Mm.220923	NM_009000	ENSMUSG00000034789	Rab24	6530406O07Rik	RAB24, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-24850936-5	chr4	24850782	24850982	+	904.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001033531, exon 1 of 10)	5' UTR (NM_001033531, exon 1 of 10)	242.0	NM_001163020	212390.0	Mm.409581	NM_001033531	ENSMUSG00000040387	Klhl32	6430524H05Rik|D4Ertd389e|Gm1356|mKIAA1900	kelch-like 32	protein-coding	3.20474815980307	3.2716357489067	4.39694923483367	1.41156655997233	3.42394644457072	3.19681489243639	2.59010850382187	1.42089974006402	-0.929662628875753	0.520072548657828	0.947641799425091
Merged-chr2-151563725-3	chr2	151563615	151563815	+	951.8666380000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8908.0	NM_145535	228765.0	Mm.32068	NM_145535	ENSMUSG00000027456	Sdcbp2	-	syndecan binding protein (syntenin) 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-66153293-2	chr5	66153193	66153393	+	691.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1339.0	NM_001127382	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	1.0660469549653	0.558756297281251	1.39853909639997	0.539499806177983	1.07770631771291	0.561174193159583	1.41353986851288	0.540981468615398	0.0412564626526023	0.980561447439547	0.998431161219273
Merged-chr1-137927077-4	chr1	137926975	137927175	+	816.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39380.0	NR_029795	735252.0		NR_029795	ENSMUSG00000065565	Mir181a-1	Mirn181a-1|Mirn213|miR-213|mir-181a-1|mmu-mir-213	microRNA 181a-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116448774-1	chr11	116448674	116448874	+	659.0	f1_balb.idr	intron (NM_001033267, intron 2 of 13)	intron (NM_001033267, intron 2 of 13)	5573.0	NM_001033267	217341.0	Mm.387352	NM_001033267	ENSMUSG00000070331	Qrich2	Gm66	glutamine rich 2	protein-coding	-0.325523219287089	-0.0729870329188683	-0.698346409607964	-0.701003629601155	-0.704756005197865	-0.694122997021887	-0.69758651694788	-0.700539528171548	-3.25652399919928	0.253452741391918	1
Merged-chr6-31074907-2	chr6	31074807	31075007	+	858.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11814.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-79428611-2	chr14	79428511	79428711	+	644.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_001024135, exon 1 of 1)	exon (NM_001024135, exon 1 of 1)	2100.0	NM_001024135	211255.0	Mm.284526	NM_001024135	ENSMUSG00000043881	Kbtbd7	1110008P08Rik|AU045792|Gm295	kelch repeat and BTB (POZ) domain containing 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-126700705-2	chr3	126700605	126700805	+	578.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025438, intron 3 of 18)	intron (NM_001025438, intron 3 of 18)	103754.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-43232052-3	chr5	43231954	43232154	+	912.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028417, intron 1 of 7)	intron (NR_028417, intron 1 of 7)	-1409.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-147528152-2	chr4	147528052	147528252	+	819.214294	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25125.0	NM_001014397	433804.0	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154	zinc finger protein 985	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-72838370-4	chr17	72838273	72838473	+	976.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357370, intron 1 of 2)	intron (NM_001357370, intron 1 of 2)	325.0	NM_001357371	383295.0	Mm.277533	NM_027166	ENSMUSG00000039770	Ypel5	2310076K21Rik|CGI-127	yippee like 5	protein-coding	1.5420846104781	1.53714256400774	1.04449665699333	1.43401834159569	1.25687137544559	0.859597353251594	0.846375708450698	1.64595684572607	-0.76806987510853	0.566120863014805	0.962163739245057
Merged-chr13-99205093-3	chr13	99204952	99205152	+	821.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004149, intron 1 of 4)	intron (NM_001004149, intron 1 of 4)	20229.0	NM_001004149	238803.0	Mm.343207	NM_001004149	ENSMUSG00000050919	Zfp366	DC-SCRIPT|Znf366	zinc finger protein 366	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115075791-3	chr11	115075789	115075989	+	923.962952	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13850.0	NM_172050	217306.0	Mm.222667	NM_172050	ENSMUSG00000048498	Cd300e	BC034097|CLM2|Cd300le|TREM5	CD300E molecule	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-95449411-3	chr1	95449301	95449501	+	884.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	135773.0	NM_026321	67698.0	Mm.272705	NM_026321	ENSMUSG00000051185	Fam174a	2310044D20Rik|Fam174|Naa6|Tmem157	family with sequence similarity 174, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-11368484-3	chr19	11368422	11368622	+	658.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6966.0	NM_001310331	666907.0		NM_001310331	ENSMUSG00000101389	Ms4a4a	EG666907	membrane-spanning 4-domains, subfamily A, member 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-120450077-2	chr14	120449977	120450177	+	746.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A4-int|LTR|ERVL-MaLR	-28384.0	NM_029519	76108.0	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-44381718-2	chr18	44381618	44381818	+	866.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027490, intron 1 of 10)	intron (NM_027490, intron 1 of 10)	1218.0	NM_027490	70640.0	Mm.87629	NM_027490	ENSMUSG00000024472	Dcp2	2410015D23Rik|5730537H01Rik|AL118268	decapping mRNA 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91398755-1	chr16	91398655	91398855	+	1000.0	f0_c57.idr	intron (NM_001347258, intron 7 of 7)	intron (NM_001347258, intron 7 of 7)	-7480.0	NM_008349	16155.0	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-76139315-4	chr5	76139209	76139409	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020611)	promoter-TSS (NM_020611)	-964.0	NM_020611	57357.0	Mm.289446	NM_020611	ENSMUSG00000029233	Srd5a3	1110025P14Rik|A430076C09|AV364670|AW987574|D730040M03Rik|H5ar|S5AR 3|Srd5a2l	steroid 5 alpha-reductase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70597355-1	chr8	70597255	70597455	+	545.0	f1_c57bl6.idr	TTS (NM_023627)	TTS (NM_023627)	2874.0	NM_023627	71780.0	Mm.29357	NM_023627	ENSMUSG00000019139	Isyna1	1300017C10Rik|AU018670	myo-inositol 1-phosphate synthase A1	protein-coding	0.655759040345834	3.06186177827465	2.74065111803737	0.713988451826843	0.664821906458076	2.95127731170543	0.755248357124911	0.71977469861404	-0.935893868921872	0.773699118505041	0.998431161219273
Merged-chr11-23306460-4	chr11	23306383	23306583	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001190401)	promoter-TSS (NM_001190401)	-412.0	NM_001190401	17847.0	Mm.119155	NM_001190401	ENSMUSG00000056342	Usp34	A530081C03Rik|Murr2	ubiquitin specific peptidase 34	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10303253-5	chr19	10303118	10303318	+	832.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198114, intron 1 of 19)	intron (NM_198114, intron 1 of 19)	1659.0	NM_198114	269060.0	Mm.329718	NM_198114	ENSMUSG00000035735	Dagla	Nsddr	diacylglycerol lipase, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-39964069-4	chr15	39963976	39964176	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045719, exon 2 of 3)	non-coding (NR_045719, exon 2 of 3)	1427.0	NR_045719	105976.0	Mm.394885	NR_045719		AU022793	-	expressed sequence AU022793	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30096070-2	chr2	30095970	30096170	+	845.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-2435.0	NM_001037762	66220.0	Mm.22538	NM_025428	ENSMUSG00000015335	Zdhhc12	1190004A01Rik	zinc finger, DHHC domain containing 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-72260879-4	chr2	72260732	72260932	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-24805.0	NM_023057	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-34904285-4	chr8	34904200	34904400	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175091, intron 3 of 26)	MER90a|LTR|ERV1	61390.0	NM_175091	21951.0	Mm.88364	NM_175091	ENSMUSG00000031529	Tnks	4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	protein-coding	5.65743847246523	5.66557566540275	5.32424340576272	5.71685044652009	5.87201974280081	5.30996121223537	5.15250333521706	5.50372124165518	-0.118324826742033	0.669633560591391	0.993577811443337
Merged-chr2-26931740-2	chr2	26931640	26931840	+	542.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011512, intron 1 of 5)	intron (NM_011512, intron 1 of 5)	1771.0	NM_011512	20932.0	Mm.300594	NM_011512	ENSMUSG00000014867	Surf4	AL033340|AL033373|Surf-4	surfeit gene 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-115425906-2	chr8	115425806	115426006	+	688.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	280988.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139789712-3	chr5	139789588	139789788	+	873.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1848.0	NM_010757	17135.0	Mm.157313	NM_010757	ENSMUSG00000018143	Mafk	AW061068|NF-E2|Nfe2u	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein K (avian)	protein-coding	2.69511287710547	2.66555790818673	1.51250928846071	2.34046740814141	3.9656897080995	3.17325047770171	2.59036205756756	3.77259138463624	1.92647797207509	0.00860382305379129	0.0978161740360593
Merged-chr11-80429247-1	chr11	80429147	80429347	+	702.0	f0_c57.idr	intron (NM_178616, intron 1 of 13)	CpG	632.0	NM_178616	69077.0	Mm.260539	NM_178616	ENSMUSG00000017428	Psmd11	1700089D09Rik|1810019E17Rik|2610024G20Rik|2810055C24Rik|C78232|P44.5|S9	proteasome (prosome, macropain) 26S subunit, non-ATPase, 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-8214568-4	chr17	8214444	8214644	+	922.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21499.0	NM_001190333	12458.0	Mm.8007	NM_009835	ENSMUSG00000040899	Ccr6	CC-CKR-6|CCR-6|Cmkbr6|KY411	chemokine (C-C motif) receptor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-67551437-4	chr7	67551334	67551534	+	920.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028144, intron 5 of 8)	intron (NR_028144, intron 5 of 8)	93802.0	NM_175124	67867.0	Mm.31247	NM_027413	ENSMUSG00000030556	Lrrc28	1300004K21Rik|2210012C09Rik|2310058O11Rik	leucine rich repeat containing 28	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-7346850-2	chr9	7346750	7346950	+	996.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001320076)	promoter-TSS (NM_001320076)	-524.0	NM_001320076	17381.0	Mm.2055	NM_008605	ENSMUSG00000049723	Mmp12	AV378681|MME|Mmel	matrix metallopeptidase 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-10434295-4	chr16	10434216	10434416	+	967.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013778, intron 1 of 6)	intron (NM_001013778, intron 1 of 6)	13046.0	NM_001359069	383103.0	Mm.325732	NM_001013778	ENSMUSG00000050908	Tvp23a	Fam18a	trans-golgi network vesicle protein 23A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-64934044-1	chr14	64933944	64934144	+	561.5	f0_balb.idr	intron (NM_177338, intron 1 of 9)	B3|SINE|B2	15813.0	NM_177338	219150.0	Mm.344074	NM_177338	ENSMUSG00000021972	Hmbox1	AI451877|AI604847|F830020C16Rik	homeobox containing 1	protein-coding	0.854162793552061	0.989383742003458	0.946018298112639	0.496911968117309	0.959739902669531	0.511465815216529	0.679655724186764	0.797856662951417	-0.488460556558514	0.757529056760819	1
Merged-chr19-12730629-4	chr19	12730530	12730730	+	998.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34840.0	NM_029550	64697.0	Mm.218561	NM_029550	ENSMUSG00000024694	Keg1	0610008P16Rik|AI316519|GS4059	kidney expressed gene 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-51910245-2	chr11	51910145	51910345	+	855.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	-52615.0	NM_001357588	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116138930-4	chr11	116138826	116139026	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024177)	promoter-TSS (NM_024177)	-58.0	NM_024177	60441.0	Mm.29974	NM_024177	ENSMUSG00000020775	Mrpl38	1110036N21Rik|4733401F03Rik|MRP-L3|R75240|Rpml3	mitochondrial ribosomal protein L38	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-58749306-4	chr15	58749222	58749422	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	74105.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-125745043-5	chr10	125744935	125745135	+	860.216675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-221184.0	NM_177152	320398.0	Mm.275586	NM_177152	ENSMUSG00000020105	Lrig3	9030421L11Rik|9130004I02Rik|9430095K15Rik|mKIAA3016	leucine-rich repeats and immunoglobulin-like domains 3	protein-coding	1.84916506234795	1.46990585009409	1.76842555898493	1.61142590132943	1.02751223011266	1.31993224043653	0.878823669578629	0.865270895678094	-2.81541560189317	0.0366535698161477	0.271798226609481
Merged-chr12-84010740-2	chr12	84010640	84010840	+	826.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_012006, intron 1 of 2)	intron (NM_012006, intron 1 of 2)	1238.0	NM_012006	26897.0	Mm.1978	NM_012006	ENSMUSG00000072949	Acot1	ACH2|CTE-1|CTE-I|Cte1|D12Ucla1	acyl-CoA thioesterase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-102516719-2	chr15	102516619	102516819	+	972.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163643, intron 1 of 15)	CpG	285.0	NM_001163643	26404.0	Mm.172897	NM_009582	ENSMUSG00000023050	Map3k12	DLK|MUK|Zpk	mitogen-activated protein kinase kinase kinase 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101412079-3	chr7	101411920	101412120	+	975.5277710000001	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_027180, exon 30 of 30)	3' UTR (NM_027180, exon 30 of 30)	-9671.0	NM_001008548	207728.0	Mm.247564	NM_001008548	ENSMUSG00000030653	Pde2a	CGS-PDE|cGSPDE	phosphodiesterase 2A, cGMP-stimulated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-25517614-2	chr9	25517514	25517714	+	616.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 2 of 7)	Lx6|LINE|L1	36017.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111444288-4	chr12	111444170	111444370	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009396, intron 1 of 11)	intron (NM_009396, intron 1 of 11)	1609.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-25352972-2	chr15	25352872	25353072	+	716.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60792.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-70877906-4	chr2	70877816	70878016	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52436.0	NM_172664	228012.0	Mm.136511	NM_172664	ENSMUSG00000041997	Tlk1	4930545J15Rik	tousled-like kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-67391343-4	chr18	67391228	67391428	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026473, exon 2 of 4)	exon (NM_026473, exon 2 of 4)	597.0	NM_026473	67951.0	Mm.181860	NM_026473	ENSMUSG00000001473	Tubb6	2310057H16Rik|BB220206	tubulin, beta 6 class V	protein-coding	3.90460159870502	4.51939593236983	3.82033544051776	3.2553685390371	4.47260350745809	4.05817023942449	4.30642701414884	4.51465746012145	0.551943405428705	0.219155130568773	0.710517864987671
Merged-chr10-93175499-4	chr10	93175389	93175589	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146239, intron 1 of 16)	L1MC3|LINE|L1	12704.0	NR_035452	100316689.0		NR_035452	ENSMUSG00000089214	Mir1931	mir-1931|mmu-mir-1931	microRNA 1931	ncRNA	4.2339663460368	4.44126426935204	4.62308397339018	5.04409356405251	5.11020040117066	4.4727677733525	5.23512961475742	4.78388827835547	0.389356370214786	0.285408285256876	0.790108123329948
Merged-chr16-95798255-2	chr16	95798155	95798355	+	695.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	95848.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-102690822-2	chr13	102690722	102690922	+	629.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2725.0	NM_001360519	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-128832694-4	chr1	128832584	128832784	+	918.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CAAAG)n|Simple_repeat|Simple_repeat	-240385.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-82400098-2	chr12	82399998	82400198	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001167983, intron 12 of 23)	intron (NM_001167983, intron 12 of 23)	88749.0	NM_172579	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-45917041-4	chr5	45916947	45917147	+	919.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	15362.0	NR_110478	78106.0	Mm.243807	NR_110478	ENSMUSG00000106602	4930405L22Rik	-	RIKEN cDNA 4930405L22 gene	ncRNA	0.157846155646401	-0.188096229725856	-0.192416332500127	-0.195739847347228	0.166058321123157	-0.187120473039173	-0.191464708813309	0.417418480822509	1.5604429247531	0.518627376014483	1
Merged-chr11-82870263-4	chr11	82870162	82870362	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164569, intron 1 of 7)	intron (NM_001164569, intron 1 of 7)	482.0	NM_001164570	67338.0	Mm.341608	NM_026097	ENSMUSG00000020696	Rffl	1700051E09Rik|4930516L10Rik|BG080975|Carp2	ring finger and FYVE like domain containing protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-75676067-3	chr16	75675978	75676178	+	657.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	83187.0	NM_198302	224344.0	Mm.273214	NM_198302	ENSMUSG00000032940	Rbm11	A330018F01	RNA binding motif protein 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101975623-4	chr15	101975459	101975659	+	896.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21272.0	NM_212487	332131.0	Mm.325105	NM_212487	ENSMUSG00000050463	Krt78	2310030B04Rik|Kb40	keratin 78	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-112493258-4	chr2	112493144	112493344	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028844, intron 1 of 5)	CpG	280.0	NM_028844	74268.0	Mm.315125	NM_028844	ENSMUSG00000003604	Aven	1700013A01Rik|1700056A21Rik|mAven-L|mAven-S	apoptosis, caspase activation inhibitor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-26466128-4	chr14	26466028	26466228	+	913.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310445, intron 5 of 22)	intron (NM_001310445, intron 5 of 22)	68496.0	NM_032008	83997.0	Mm.36769	NM_032008	ENSMUSG00000021870	Slmap	D330001L02Rik|Miranda|Slap|mKIAA1601	sarcolemma associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-53115560-2	chr15	53115460	53115660	+	652.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	230623.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80172210-2	chr10	80172110	80172310	+	960.416626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027207)	promoter-TSS (NM_027207)	-734.0	NM_027207	69770.0	Mm.302754	NM_027207	ENSMUSG00000035595	1600002K03Rik	-	RIKEN cDNA 1600002K03 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-154557183-2	chr2	154557083	154557283	+	675.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021546, intron 1 of 12)	intron (NM_021546, intron 1 of 12)	1670.0	NM_021546	56846.0	Mm.143748	NM_021546	ENSMUSG00000027489	Necab3	2900010M17Rik|AI853434|Apba2bp|Nip1|XB51	N-terminal EF-hand calcium binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-108179244-4	chr6	108179139	108179339	+	918.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145937, intron 1 of 8)	intron (NM_145937, intron 1 of 8)	6344.0	NM_145937	58911.0	Mm.439876	NM_145937	ENSMUSG00000030101	Sumf1	AA543204|AI463102|AI851573|FGE	sulfatase modifying factor 1	protein-coding	3.13489052494698	3.51620489717242	3.48084132469688	2.6685543599096	2.5443198411349	4.08714639636143	3.58388200619611	3.23590327045177	0.370793331564052	0.549566367853608	0.958850792269644
Merged-chr7-39544388-4	chr7	39544307	39544507	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26641.0	NM_001004139	70227.0	Mm.333800	NM_001004139	ENSMUSG00000068959	Zfp619	3000002G13Rik	zinc finger protein 619	protein-coding	7.17484486685417	7.16937458649995	7.1388082099239	7.26839805631321	6.90764250752039	6.89430769717549	6.65405267177835	6.38089092230141	-0.490358187447334	0.0055229966982138	0.071974925110611
Merged-chr5-123018966-3	chr5	123018841	123019041	+	862.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175423, intron 1 of 1)	intron (NM_175423, intron 1 of 1)	3867.0	NM_175423	109305.0	Mm.218582	NM_175423	ENSMUSG00000049686	Orai1	D730049H07Rik|Tmem142a|orai-1	ORAI calcium release-activated calcium modulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-74276904-2	chr1	74276804	74277004	+	574.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1696.0	NM_174985	227289.0	Mm.246587	NM_174985	ENSMUSG00000064272	Gpbar1	BG37|GPCR|GPR131|M-BAR|TGR5	G protein-coupled bile acid receptor 1	protein-coding	-1.84354474832578	-1.81325489144778	-1.53416061964661	-1.82993901100912	-1.8414184563789	-1.81126990231468	-1.82034119297928	-1.82859217979378	-1.52252619601533	0.665276690233728	1
Merged-chr13-97187233-2	chr13	97187133	97187333	+	758.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010422, intron 5 of 13)	L1MC4|LINE|L1	11124.0	NM_010422	15212.0	Mm.27816	NM_010422	ENSMUSG00000021665	Hexb	-	hexosaminidase B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-126204868-4	chr4	126204761	126204961	+	958.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2151.0	NM_146153	230753.0	Mm.29813	NM_146153	ENSMUSG00000043962	Thrap3	9330151F09Rik|B230333E16Rik|Trap150	thyroid hormone receptor associated protein 3	protein-coding	-0.986117776978398	-1.33156256825259	-1.34133402424827	-1.34936058913999	-1.21427833167172	-1.32944505297573	-1.33912198079506	-1.34792383786197	-0.98711403806483	0.775821656509867	1
Merged-chr10-53629497-4	chr10	53629422	53629622	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027830, intron 2 of 13)	CpG	917.0	NM_027830	71567.0	Mm.278221	NM_027830	ENSMUSG00000058298	Mcm9	9030408O17Rik|Gm235|Mcmdc1	minichromosome maintenance 9 homologous recombination repair factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-66805627-2	chr14	66805540	66805740	+	758.0	f0_balb.idr|f0_c57.idr	intron (NM_009955, intron 13 of 13)	intron (NM_009955, intron 13 of 13)	62960.0	NM_009955	12934.0	Mm.352648	NM_009955	ENSMUSG00000022048	Dpysl2	AI851130|Crmp2|DRP2|Musunc33|TOAD-64|Ulip2	dihydropyrimidinase-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128165812-2	chr10	128165712	128165912	+	559.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039080, intron 2 of 13)	B2_Mm1a|SINE|B2	10756.0	NM_019711	56516.0	Mm.42247	NM_019711	ENSMUSG00000040043	Rbms2	2610315E04Rik|Scr3	RNA binding motif, single stranded interacting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-9675067-1	chr4	9674967	9675167	+	565.0	f1_balb.idr	Intergenic	Intergenic	-5723.0	NM_001290367	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120743752-4	chr8	120743645	120743845	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008320, exon 3 of 9)	exon (NM_008320, exon 3 of 9)	5106.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-56108353-4	chr9	56108242	56108442	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011193, intron 1 of 14)	intron (NM_011193, intron 1 of 14)	18366.0	NM_011193	19200.0	Mm.2534	NM_011193	ENSMUSG00000032322	Pstpip1	CD2BP1|def-2	proline-serine-threonine phosphatase-interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-21757756-4	chr14	21757664	21757864	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359953, intron 1 of 5)	(T)n|Simple_repeat|Simple_repeat	6212.0	NM_001359953	67630.0	Mm.102765	NM_026283	ENSMUSG00000021770	Samd8	1110053F04Rik|1700010P07Rik|SMSr	sterile alpha motif domain containing 8	protein-coding	5.10520990512803	4.92375113417143	5.2933812264082	4.59957296082973	5.34035112592629	4.70452190183265	5.19891063900845	5.43966415452113	0.23784412032702	0.46095696080638	0.920953234475195
Merged-chr6-37354909-3	chr6	37354729	37354929	+	790.133362	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178661, intron 6 of 11)	intron (NM_178661, intron 6 of 11)	-54853.0	NM_001347104	320127.0	Mm.119469	NM_001081206	ENSMUSG00000038665	Dgki	6430604M11Rik|C130010K08Rik	diacylglycerol kinase, iota	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-64177903-1	chr13	64177803	64178003	+	588.0	f1_c57bl6.idr	intron (NM_019986, intron 5 of 7)	intron (NM_019986, intron 5 of 7)	16037.0	NM_019986	56541.0	Mm.40989	NM_019986	ENSMUSG00000021476	Habp4	4933413D03Rik|4933428J01Rik	hyaluronic acid binding protein 4	protein-coding	-0.476232647556604	-0.456504192789633	-0.462862610567098	0.786479280152765	-0.474972503104072	-0.210962788816325	-0.461451712673186	-0.466963488190575	-3.09472261873104	0.220068634662516	1
Merged-chr11-80174340-6	chr11	80174218	80174418	+	758.111084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172133, intron 8 of 10)	intron (NM_172133, intron 8 of 10)	-9554.0	NM_028019	71956.0	Mm.22985	NM_028019	ENSMUSG00000020707	Rnf135	0610037N03Rik|2410006N06Rik	ring finger protein 135	protein-coding	-2.18233058068552	-2.15536956715525	-2.16352280018114	-2.04193253143548	-2.18043796738662	-2.15360272754651	-2.16167708693786	-2.16902129354933	-0.683654500252594	0.846597994014493	1
Merged-chr3-146451507-3	chr3	146451427	146451627	+	655.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028836, intron 1 of 5)	ORR1B1|LTR|ERVL-MaLR	1060.0	NM_001293672	74245.0	Mm.45396	NM_028836	ENSMUSG00000028189	Ctbs	2210401K11Rik|CTB	chitobiase, di-N-acetyl-	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-87855432-2	chr10	87855332	87855532	+	615.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2833.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-19299003-2	chr2	19298903	19299103	+	653.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081083, intron 17 of 19)	MTD|LTR|ERVL-MaLR	-45314.0	NR_126563	108871.0	Mm.107666	NR_126563		4930447M23Rik	-	RIKEN cDNA 4930447M23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101275850-3	chr15	101275748	101275948	+	866.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8453.0	NM_026566	68118.0	Mm.482360	NM_026566	ENSMUSG00000037204	Atg101	9430023L20Rik|AA407441|AU022967	autophagy related 101	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-163383786-1	chr1	163383686	163383886	+	862.6666869999999	f0_balb.idr	Intergenic	Intergenic	19883.0	NR_132627	98376.0	Mm.32901	NM_178883	ENSMUSG00000040124	Gorab	NTKL-BP1|SCYL1-BP1|Scyl1bp1	golgin, RAB6-interacting	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-138141430-4	chr6	138141314	138141514	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361309)	promoter-TSS (NM_001361309)	-173.0	NM_001347489	56615.0	Mm.14796	NM_019946	ENSMUSG00000008540	Mgst1	1500002K10Rik|Gst	microsomal glutathione S-transferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-95503599-3	chr13	95503484	95503684	+	808.722229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F|LTR|ERVL-MaLR	21656.0	NM_007974	14063.0	Mm.1614	NM_007974	ENSMUSG00000021678	F2rl1	Gpcr11|PAR-2|Par2	coagulation factor II (thrombin) receptor-like 1	protein-coding	3.83997988960087	4.90535901979506	4.8510013085605	4.35807424650605	1.22160914058419	2.34529928281509	1.40675830382573	1.33491957272651	-5.4474493138111	7.91762024273053e-09	1.00347472893254e-06
Merged-chr1-136117171-3	chr1	136117070	136117270	+	998.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081023, intron 40 of 43)	intron (NM_001081023, intron 40 of 43)	14013.0	NR_046170	329253.0	Mm.487858	NR_046167	ENSMUSG00000086264	Gm15850	6530439I21	predicted gene 15850	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-85072139-4	chr8	85072072	85072272	+	957.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039514, intron 1 of 8)	intron (NM_001039514, intron 1 of 8)	415.0	NM_001039514	330817.0	Mm.193086	NM_201408	ENSMUSG00000060038	Dhps	Dhs	deoxyhypusine synthase	protein-coding	4.42795774559307	5.03777863211409	4.54005773035723	4.14584638782131	4.42025041004163	5.4377749326183	4.29589037201918	4.22659499189067	0.14384146867693	0.730531393321087	0.998431161219273
Merged-chr10-21465544-3	chr10	21465440	21465640	+	901.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	88240.0	NM_178713	237320.0	Mm.90181	NM_178713	ENSMUSG00000037542	Aldh8a1	Raldh4	aldehyde dehydrogenase 8 family, member A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3782309-2	chr12	3782209	3782409	+	619.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_149729, exon 19 of 19)	non-coding (NR_149729, exon 19 of 19)	-24671.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-113957740-2	chr13	113957640	113957840	+	884.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172595, intron 3 of 4)	intron (NM_172595, intron 3 of 4)	163232.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-95193208-4	chr4	95193109	95193309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-140987.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-20052954-1	chr17	20052854	20053054	+	632.0	f1_balb.idr	Intergenic	MMERGLN-int|LTR|ERV1	-4749.0	NM_001104566	22313.0	Mm.379039	NM_001104566	ENSMUSG00000090315	Vmn2r104	V2r7	vomeronasal 2, receptor 104	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-97579006-2	chr7	97578906	97579106	+	720.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081267)	promoter-TSS (NM_001081267)	491.0	NM_001177945	66273.0	Mm.41583	NM_183251	ENSMUSG00000035642	Aamdc	1810020D17Rik|1810037D19Rik|LI2	adipogenesis associated Mth938 domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-13850362-4	chr17	13850256	13850456	+	865.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151731, intron 17 of 33)	B3A|SINE|B2	-88962.0	NM_022311	21646.0	Mm.486358	NM_022311	ENSMUSG00000038347	Tcte2	AI429268|Tcte-2	t-complex-associated testis expressed 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-138162893-4	chr1	138162778	138162978	+	881.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001268286, intron 2 of 28)	intron (NM_001268286, intron 2 of 28)	12248.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46815108-2	chr8	46815008	46815208	+	579.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_152560, intron 5 of 7)	intron (NR_152560, intron 5 of 7)	75363.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-124704622-3	chr8	124704525	124704725	+	828.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357357, intron 4 of 19)	intron (NM_001357357, intron 4 of 19)	17369.0	NM_001357357	234875.0	Mm.38436	NM_145607	ENSMUSG00000037300	Ttc13	BC017545	tetratricopeptide repeat domain 13	protein-coding	1.65606169685491	2.52737927968235	0.689677033613395	0.65745134349632	0.355226140883453	0.425806537564395	0.404039574690401	0.384595430321749	-5.29425465337441	0.000900236582401814	0.017823495900424
Merged-chr9-66305399-4	chr9	66305302	66305502	+	801.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45048.0	NM_145617	235439.0	Mm.244179	NM_145617	ENSMUSG00000038664	Herc1	2810449H11Rik|B230218H07|D130015N03Rik|tbl	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-45889553-2	chr13	45889453	45889653	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199304, intron 2 of 6)	intron (NM_001199304, intron 2 of 6)	75438.0	NM_001199304	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-59841691-2	chr13	59841591	59841791	+	587.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18544.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-63382021-4	chr14	63381925	63382125	+	928.783325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007549, intron 6 of 12)	intron (NM_007549, intron 6 of 12)	35162.0	NM_007549	12143.0	Mm.3962	NM_007549	ENSMUSG00000014453	Blk	-	B lymphoid kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-60255537-1	chr10	60255437	60255637	+	558.0	f1_balb.idr	Intergenic	Intergenic	-22091.0	NM_001146123	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64811320-3	chr5	64811184	64811384	+	944.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008453, intron 1 of 5)	intron (NM_008453, intron 1 of 5)	7761.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-30654389-3	chr10	30654263	30654463	+	932.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001358841, exon 12 of 16)	exon (NM_001358841, exon 12 of 16)	1504.0	NM_001111267	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-116654338-4	chr6	116654255	116654455	+	859.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178045, intron 3 of 10)	intron (NM_178045, intron 3 of 10)	3671.0	NM_001166580	213393.0	Mm.38231	NM_145980	ENSMUSG00000048489	8430408G22Rik	Depp|Depp1|Fseg	RIKEN cDNA 8430408G22 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-86493283-1	chr17	86493183	86493383	+	598.0	f0_balb.idr	exon (NM_011104, exon 9 of 15)	exon (NM_011104, exon 9 of 15)	-206105.0	NR_045435	72104.0	Mm.443401	NR_045435	ENSMUSG00000100738	2010106C02Rik	-	RIKEN cDNA 2010106C02 gene	ncRNA	1.79353028187778	1.23869051808438	1.4468138111218	2.00716625121864	2.02234604086219	2.02344556310256	2.29591755609072	2.3960328939639	1.49357056538698	0.136050891686287	0.575848517798236
Merged-chr7-44929742-4	chr7	44929622	44929822	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007458)	promoter-TSS (NM_007458)	-232.0	NM_001077264	11771.0	Mm.6877	NM_007458	ENSMUSG00000060279	Ap2a1	Adtaa	adaptor-related protein complex 2, alpha 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117390342-4	chr11	117390223	117390423	+	658.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	-24066.0	NR_132097	105827746.0	Mm.388009	NR_132097	ENSMUSG00000086588	Gm11729	-	predicted gene 11729	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-117884969-2	chr5	117884869	117885069	+	764.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008712, intron 2 of 27)	intron (NM_008712, intron 2 of 27)	18130.0	NM_008712	18125.0	Mm.44249	NM_008712	ENSMUSG00000029361	Nos1	2310005C01Rik|N-NOS|NC-NOS|NO|NOS|NOS-I|Nos-1|bNOS|nNOS	nitric oxide synthase 1, neuronal	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-119435690-2	chr8	119435590	119435790	+	789.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1472.0	NM_027950	71839.0	Mm.272357	NM_027950	ENSMUSG00000074063	Osgin1	1700012B18Rik|Okl38	oxidative stress induced growth inhibitor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-43392558-4	chr7	43392476	43392676	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M3|LINE|L1	-15704.0	NM_172900	243958.0	Mm.24444	NM_172900	ENSMUSG00000030468	Siglecg	9830164H23|A630096C01Rik|Siglec-G|Siglec10|mSiglec-G	sialic acid binding Ig-like lectin G	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-110594330-4	chr8	110594233	110594433	+	978.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172916, intron 79 of 86)	intron (NM_172916, intron 79 of 86)	-24234.0	NR_151674	234729.0	Mm.274894	NM_146216	ENSMUSG00000010936	Vac14	AA959718|BC032215|D8Wsu151e|Tax1bp2|Trx|ingls	Vac14 homolog (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-79670385-2	chr15	79670285	79670485	+	902.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172609)	promoter-TSS (NM_172609)	-483.0	NM_172609	223696.0	Mm.246435	NM_172609	ENSMUSG00000022427	Tomm22	2310047D01|Tom22	translocase of outer mitochondrial membrane 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-138067-1	chr1	137967	138167	+	607.333313	f1_c57bl6.idr	Intergenic	Intergenic	3533431.0	NM_001011874	497097.0	Mm.454496	NM_001011874	ENSMUSG00000051951	Xkr4	AY534250|Gm210|XRG4|mKIAA1889	X-linked Kx blood group related 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107287522-2	chr9	107287434	107287634	+	707.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001316691, intron 1 of 7)	intron (NM_001316691, intron 1 of 7)	1862.0	NM_001316691	102626.0	Mm.222612	NM_178907	ENSMUSG00000032577	Mapkapk3	3PK|AI874665|MAPKAP-K3|MAPKAP3|MK-3|MK3|MapkKapk3	mitogen-activated protein kinase-activated protein kinase 3	protein-coding	1.30959388402692	0.486000559004007	1.2021844712621	0.803549406594067	1.08399398030217	0.488109274116488	0.478673846814661	0.470549457228875	-1.65934706802899	0.344505598709533	1
Merged-chr2-5741078-4	chr2	5740969	5741169	+	959.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26307.0	NM_177343	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-35932866-4	chr3	35932842	35933042	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001205362)	promoter-TSS (NM_001205362)	24.0	NM_001205361	114893.0	Mm.374810	NM_033623	ENSMUSG00000027708	Dcun1d1	Rp42|SCCRO|Tes3|pTes3	DCN1, defective in cullin neddylation 1, domain containing 1 (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-117041617-4	chr4	117041525	117041725	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111277, intron 3 of 11)	intron (NM_001111277, intron 3 of 11)	22223.0	NM_001111277	108067.0	Mm.34612	NM_175135	ENSMUSG00000028683	Eif2b3	1190002P15Rik	eukaryotic translation initiation factor 2B, subunit 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-130853531-4	chr5	130853451	130853651	+	999.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	404759.0	NM_021371	140904.0	Mm.40875	NM_021371	ENSMUSG00000060371	Caln1	9630012C17Rik|Cabp8|MNCb-0849	calneuron 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-99486064-3	chr6	99486016	99486216	+	959.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347345, intron 1 of 19)	intron (NM_001347345, intron 1 of 19)	34877.0	NM_001347345	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-89268443-1	chr6	89268343	89268543	+	551.0	f0_balb.idr	Intergenic	Intergenic	17282.0	NR_131021	75131.0	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	Gm44205	RIKEN cDNA 4930512J16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-46905073-1	chr1	46904973	46905173	+	568.0	f0_balb.idr	intron (NM_001356417, intron 1 of 10)	ORR1E|LTR|ERVL-MaLR	20703.0	NM_001356417	227059.0	Mm.233889	NM_172653	ENSMUSG00000025986	Slc39a10	2900042E17Rik|5430433I10|Zip10|mKIAA1265	solute carrier family 39 (zinc transporter), member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-163910515-4	chr1	163910419	163910619	+	831.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305643, intron 19 of 19)	intron (NM_001305643, intron 19 of 19)	-18581.0	NM_001286002	240880.0	Mm.389213	NM_028776	ENSMUSG00000026584	Scyl3	1200016D23Rik|6030457O16|AW214499|Pace1	SCY1-like 3 (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150188425-1	chr4	150188325	150188525	+	568.0	f0_balb.idr	intron (NM_009802, intron 7 of 7)	B4A|SINE|B4	12710.0	NM_009802	12353.0	Mm.232523	NM_009802	ENSMUSG00000028972	Car6	Ca6|DOC1	carbonic anhydrase 6	protein-coding	1.34234227221473	1.05876488872764	1.73730369369093	1.68664392475457	2.26004001230978	1.06298212395061	1.87299143228637	1.81196993593263	1.07225864403057	0.363609203988905	0.858903333095609
Merged-chr10-81273518-2	chr10	81273418	81273618	+	588.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_018758)	TTS (NM_018758)	1921.0	NR_037218	100526465.0		NR_037218	ENSMUSG00000092781	Mir3057	mir-3057|mmu-mir-3057	microRNA 3057	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123014950-4	chr5	123014857	123015057	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175423)	promoter-TSS (NM_175423)	-117.0	NM_175423	109305.0	Mm.218582	NM_175423	ENSMUSG00000049686	Orai1	D730049H07Rik|Tmem142a|orai-1	ORAI calcium release-activated calcium modulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-26486812-2	chr2	26486712	26486912	+	994.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008714, intron 2 of 33)	intron (NM_008714, intron 2 of 33)	-16693.0	NR_105962	102465602.0		NR_105962	ENSMUSG00000098548	Mir6996	Gm27531|mmu-mir-6996	microRNA 6996	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-86935850-2	chr5	86935750	86935950	+	842.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-9347.0	NM_152811	71773.0	Mm.26741	NM_152811	ENSMUSG00000035836	Ugt2b1	1300012D20Rik	UDP glucuronosyltransferase 2 family, polypeptide B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-4843305-4	chr12	4843171	4843371	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173416)	promoter-TSS (NM_173416)	-32.0	NM_173416	238037.0	Mm.146087	NM_173416	ENSMUSG00000051721	Wdcp	A430092C04	WD repeat and coiled coil containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101785360-4	chr11	101785253	101785453	+	966.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001316366)	promoter-TSS (NM_001316366)	-43.0	NM_001316365	18612.0	Mm.5025	NM_008815	ENSMUSG00000017724	Etv4	AW414408|Pea-3|Pea3	ets variant 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-75961670-4	chr16	75961550	75961750	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39134.0	NR_155447	102632240.0	Mm.417237	NR_155447	ENSMUSG00000087214	Gm15555	-	predicted gene 15555	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-26779070-4	chr10	26778960	26779160	+	914.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176837, intron 1 of 14)	intron (NM_176837, intron 1 of 14)	6548.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128358996-2	chr10	128358896	128359096	+	742.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026444, intron 7 of 10)	intron (NM_026444, intron 7 of 10)	11041.0	NM_001081040	210582.0	Mm.296876	NM_001081040	ENSMUSG00000039914	Coq10a	Gm1	coenzyme Q10A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-137295966-1	chr5	137295866	137296066	+	547.0	f1_c57bl6.idr	TTS (NM_027356)	TTS (NM_027356)	722.0	NR_106003	102465627.0		NR_106003	ENSMUSG00000098624	Mir7036	Gm27973|mmu-mir-7036|mmu-mir-7036a	microRNA 7036	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-119835238-3	chr8	119835097	119835297	+	690.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028071, intron 2 of 3)	intron (NM_028071, intron 2 of 3)	5382.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-52283779-4	chr12	52283687	52283887	+	890.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029760, intron 7 of 10)	MTC|LTR|ERVL-MaLR	186041.0	NM_029760	76826.0	Mm.244781	NM_029760	ENSMUSG00000035142	Nubpl	2410170E07Rik	nucleotide binding protein-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100327912-4	chr11	100327779	100327979	+	939.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6528.0	NM_010257	14459.0	Mm.4767	NM_010257	ENSMUSG00000017165	Gast	GAS	gastrin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-83149828-1	chr10	83149728	83149928	+	565.0	f0_balb.idr	intron (NM_021439, intron 2 of 2)	intron (NM_021439, intron 2 of 2)	164331.0	NM_021439	58250.0	Mm.360747	NM_021439	ENSMUSG00000034612	Chst11	1110020P09Rik|C4ST|C4ST-1|C4ST1|C4s	carbohydrate sulfotransferase 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-80044543-2	chr11	80044443	80044643	+	653.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36448.0	NM_001277106	54394.0	Mm.272093	NM_018776	ENSMUSG00000017561	Crlf3	BB164954|Creme9|Cytor4	cytokine receptor-like factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-97580387-5	chr7	97580307	97580507	+	903.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177947)	promoter-TSS (NM_001177947)	511.0	NM_001081267	233532.0	Mm.43977	NM_001081267	ENSMUSG00000035623	Rsf1	4832420A03Rik|C030033M12Rik|Gm164|Hbxap|XAP8|p325	remodeling and spacing factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-92438136-4	chr2	92438053	92438253	+	996.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4084.0	NM_009963	12953.0	Mm.254181	NM_009963	ENSMUSG00000068742	Cry2	AV006279|D130054K12Rik	cryptochrome 2 (photolyase-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-45018957-2	chr10	45018857	45019057	+	618.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48257.0	NM_011156	19072.0	Mm.10281	NM_011156	ENSMUSG00000019849	Prep	AI047692|AI450383|D10Wsu136e|PEP|Pop	prolyl endopeptidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70520101-2	chr11	70520001	70520201	+	728.833374	f1_balb.idr|f1_c57bl6.idr	exon (NM_146020, exon 3 of 3)	exon (NM_146020, exon 3 of 3)	892.0	NM_146020	216871.0	Mm.22551	NM_146020	ENSMUSG00000046811	Gltpd2	C730027E14Rik	glycolipid transfer protein domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-4443640-2	chr18	4443540	4443740	+	683.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR41A2|LTR|ERV1	68048.0	NM_001361009	67440.0	Mm.49826	NM_026157	ENSMUSG00000024234	Mtpap	0610027A18Rik|AW551379|Papd1	mitochondrial poly(A) polymerase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-25947441-2	chr17	25947341	25947541	+	567.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358019, intron 2 of 2)	intron (NM_001358019, intron 2 of 2)	-2510.0	NM_001039038	621239.0	Mm.381070	NM_001039038	ENSMUSG00000090113	Nhlrc4	F430201B04Rik	NHL repeat containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-109337001-1	chr4	109336901	109337101	+	804.5	f0_balb.idr	intron (NM_007943, intron 12 of 24)	intron (NM_007943, intron 12 of 24)	-6055.0	NM_001159964	13858.0	Mm.318250	NM_007943	ENSMUSG00000028552	Eps15	2410112D09Rik	epidermal growth factor receptor pathway substrate 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-116892846-4	chr8	116892745	116892945	+	900.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026844, intron 3 of 3)	intron (NM_026844, intron 3 of 3)	28591.0	NM_026844	66531.0	Mm.4011	NM_026844	ENSMUSG00000014633	Cmc2	1110046L09Rik|2310061C15Rik|DC13	COX assembly mitochondrial protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-103281267-1	chr11	103281167	103281367	+	945.0	f1_c57bl6.idr	Intergenic	Intergenic	-13866.0	NM_016896	53859.0	Mm.158981	NM_016896	ENSMUSG00000020941	Map3k14	Nik|aly	mitogen-activated protein kinase kinase kinase 14	protein-coding	1.19160503644898	1.06691185664177	1.44413821208952	1.89394790564101	1.808282958531	1.50033341847715	1.96831542230555	1.90423583542958	1.18305405588218	0.298563224557189	0.800257675359925
Merged-chr1-131060546-4	chr1	131060424	131060624	+	995.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008551, intron 1 of 9)	intron (NM_008551, intron 1 of 9)	37319.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-99204254-2	chr10	99204154	99204354	+	610.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58977.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-79920643-4	chr7	79920540	79920740	+	977.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009682)	promoter-TSS (NM_009682)	0.0	NM_009682	11778.0	Mm.220173	NM_009682	ENSMUSG00000063801	Ap3s2	[s]3B	adaptor-related protein complex 3, sigma 2 subunit	protein-coding	3.00550314895299	4.03028325344716	2.25028913964785	4.01672845204902	3.74881742238884	4.28614789877644	2.47685692166394	3.81414930310165	0.305487284922268	0.637522061525733	0.982417279970648
Merged-chr2-34871023-4	chr2	34870904	34871104	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080554)	promoter-TSS (NM_080554)	-42.0	NM_080554	66998.0	Mm.270632	NM_080554	ENSMUSG00000026869	Psmd5	1500032A03Rik|AW475925|S5b|W91691|mKIAA0072	proteasome (prosome, macropain) 26S subunit, non-ATPase, 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-110250876-6	chr3	110250708	110250908	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_024139, exon 1 of 2)	non-coding (NR_024139, exon 1 of 2)	191.0	NM_178891	99890.0	Mm.36115	NM_178891	ENSMUSG00000049300	Prmt6	AW124876|BB233495|Hrmt1l6	protein arginine N-methyltransferase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-119809730-4	chr13	119809649	119809849	+	965.1083369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18627.0	NM_001302550	72465.0	Mm.139115	NM_028245	ENSMUSG00000094870	Zfp131	2610109I01Rik|AW558871|Znf131	zinc finger protein 131	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-75258399-2	chr10	75258299	75258499	+	578.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_153406, intron 6 of 15)	intron (NM_153406, intron 6 of 15)	46009.0	NM_001145826	74392.0	Mm.27716	NM_153406	ENSMUSG00000033444	Specc1l	4930470P14Rik|4932439K10Rik|9530057A13Rik|AI317249|Cytsa|mKIAA0376	sperm antigen with calponin homology and coiled-coil domains 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-113124955-4	chr12	113124880	113125080	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346696, intron 7 of 19)	intron (NM_001346696, intron 7 of 19)	-15256.0	NM_024223	68337.0	Mm.133825	NM_024223	ENSMUSG00000006356	Crip2	0610010I23Rik|AW743261|C77570|CRP2|CRP4|Crp|ESP1|Hlp	cysteine rich protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43434264-2	chr4	43434164	43434364	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5130.0	NM_001162381	329831.0	Mm.454466	NM_177377	ENSMUSG00000042788	Fam166b	4833436C18Rik	family with sequence similarity 166, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36396064-2	chr18	36395964	36396164	+	708.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47440.0	NM_001081365	66060.0	Mm.272527	NM_001081365	ENSMUSG00000046727	Cystm1	0610010O12Rik	cysteine-rich transmembrane module containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-128183737-2	chr7	128183637	128183837	+	753.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001029872, intron 8 of 30)	intron (NM_001029872, intron 8 of 30)	9791.0	NM_001029872	381924.0	Mm.334257	NM_001029872	ENSMUSG00000070369	Itgad	Cd11d	integrin, alpha D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127291258-1	chr10	127291158	127291358	+	1000.0	f0_balb.idr	intron (NM_001290183, intron 1 of 2)	intron (NM_001290183, intron 1 of 2)	465.0	NM_001290183	13198.0	Mm.110220	NM_007837	ENSMUSG00000025408	Ddit3	CHOP-10|CHOP10|chop|gadd153	DNA-damage inducible transcript 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-88879399-2	chr12	88879299	88879499	+	582.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001198587, intron 3 of 19)	intron (NM_001198587, intron 3 of 19)	-73991.0	NM_172544	18191.0	Mm.425766	NM_172544	ENSMUSG00000066392	Nrxn3	-	neurexin III	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-154288830-4	chr3	154288731	154288931	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41729.0	NM_010713	16875.0	Mm.15530	NM_010713	ENSMUSG00000096225	Lhx8	L3|Lhx7	LIM homeobox protein 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-89026331-1	chr11	89026231	89026431	+	830.0	f1_balb.idr	Intergenic	B3A|SINE|B2	26928.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	-0.723364292402841	-0.848712130018567	-0.417348019439663	-0.855857007956273	-0.599651614851882	-0.846095312512614	-0.853181490235317	-0.855494299966171	-1.07692776591902	0.709573605714299	1
Merged-chr1-136145969-2	chr1	136145869	136146069	+	868.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039472, intron 3 of 34)	intron (NM_001039472, intron 3 of 34)	14579.0	NR_153829	16565.0	Mm.276135	NM_019962	ENSMUSG00000041642	Kif21b	2610511N21Rik|mKIAA0449	kinesin family member 21B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-121371732-4	chr9	121371640	121371840	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357973, intron 1 of 5)	intron (NM_001357973, intron 1 of 5)	4782.0	NM_175114	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-21180039-4	chr19	21179920	21180120	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	75310.0	NR_126458	75354.0	Mm.243873	NR_126458		4930554I06Rik	-	RIKEN cDNA 4930554I06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-122465706-3	chr14	122465596	122465796	+	847.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022987)	promoter-TSS (NM_022987)	-38.0	NM_022987	65100.0	Mm.390761	NM_022987	ENSMUSG00000041703	Zic5	1700049L20Rik|Opr	zinc finger protein of the cerebellum 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-121643594-5	chr8	121643434	121643634	+	958.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080855, intron 1 of 12)	intron (NM_080855, intron 1 of 12)	8399.0	NM_080855	142682.0	Mm.103202	NM_080855	ENSMUSG00000061410	Zcchc14	AA792890|BDG29	zinc finger, CCHC domain containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-75222782-4	chr10	75222686	75222886	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145826, intron 2 of 18)	intron (NM_001145826, intron 2 of 18)	10396.0	NM_001145826	74392.0	Mm.27716	NM_153406	ENSMUSG00000033444	Specc1l	4930470P14Rik|4932439K10Rik|9530057A13Rik|AI317249|Cytsa|mKIAA0376	sperm antigen with calponin homology and coiled-coil domains 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135272909-4	chr4	135272817	135273017	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013885)	promoter-TSS (NM_013885)	-157.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-116649947-2	chr4	116649821	116650021	+	587.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_021473, intron 1 of 8)	B1_Mus1|SINE|Alu	1753.0	NM_021473	58810.0	Mm.30085	NM_021473	ENSMUSG00000028692	Akr1a1	2610201A18Rik|Akr1a4	aldo-keto reductase family 1, member A1 (aldehyde reductase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-66711482-3	chr17	66711429	66711629	+	829.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 23 of 32)	ORR1E|LTR|ERVL-MaLR	-2927.0	NR_151453	102639882.0	Mm.443262	NR_151453		1700016K05Rik	-	RIKEN cDNA 1700016K05 gene	ncRNA	-0.669219287133981	-0.659841304711357	-0.662928395897702	-0.155941186119873	-0.409793623762858	-0.470282561255969	-0.662248732811155	-0.664886672666654	-0.414251037464305	0.880121573777359	1
Merged-chr10-77264316-2	chr10	77264216	77264416	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030262, intron 4 of 8)	intron (NM_030262, intron 4 of 8)	5016.0	NM_030262	80294.0	Mm.203556	NM_030262	ENSMUSG00000020260	Pofut2	2310011G23Rik|AI256847|BC003494|C21orf80|FUT13	protein O-fucosyltransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-11473244-4	chr8	11473161	11473361	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011227, intron 1 of 1)	intron (NM_011227, intron 1 of 1)	-4668.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-111389103-4	chr10	111389002	111389202	+	752.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-84125.0	NM_001358932	53605.0	Mm.290407	NM_015781	ENSMUSG00000058799	Nap1l1	AA407126|AI256722|D10Ertd68e|NAP-1	nucleosome assembly protein 1-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-27026857-2	chr9	27026757	27026957	+	864.7000119999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_178027, intron 1 of 5)	intron (NM_178027, intron 1 of 5)	3237.0	NM_178027	69091.0	Mm.218717	NM_178027	ENSMUSG00000031988	Vps26b	1810012I05Rik|2310075A12Rik|AI848392	VPS26 retromer complex component B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126567100-2	chr8	126567004	126567204	+	690.0	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	26332.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	0.988231358258981	0.187297674123941	0.180308984343065	0.623462182789511	0.853424422934018	0.188868165425777	0.181853481933475	0.175839883108126	-0.880746086048865	0.674596536271387	1
Merged-chr10-99913222-2	chr10	99913122	99913322	+	702.916687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-102599.0	NM_001347156	17311.0	Mm.45124	NM_013598	ENSMUSG00000019966	Kitl	Clo|Con|Gb|Kitlg|Mgf|SCF|SF|SLF|Sl|blz|contrasted	kit ligand	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56763178-2	chr17	56763078	56763278	+	840.1666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1573.0	NM_001360405	224907.0	Mm.293973	NM_144858	ENSMUSG00000007603	Dus3l	AI662135|AW557805	dihydrouridine synthase 3-like (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-33900251-1	chr17	33900151	33900351	+	610.0	f1_balb.idr	Intergenic	RLTR41A2|LTR|ERV1	-4884.0	NR_040470	474160.0	Mm.206186	NR_040470	ENSMUSG00000092349	Platr17	-	pluripotency associated transcript 17	ncRNA	2.67901751730434	3.00018011296818	3.18874404757221	2.82134306148919	3.05036836859666	2.77260597591054	3.21270432538844	3.27363874325725	0.291151097507624	0.643201246906427	0.982823301118608
Merged-chr5-34562039-2	chr5	34561941	34562141	+	733.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011893, intron 12 of 12)	intron (NM_011893, intron 12 of 12)	-11623.0	NM_001024458	11518.0	Mm.289106	NM_013457	ENSMUSG00000029106	Add1	AI256389	adducin 1 (alpha)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-66124489-4	chr14	66124396	66124596	+	900.2708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271402)	promoter-TSS (NM_001271402)	26.0	NM_001271402	13850.0	Mm.15295	NM_007940	ENSMUSG00000022040	Ephx2	CEH|Eph2|SEH|sEP	epoxide hydrolase 2, cytoplasmic	protein-coding	1.01673619305182	1.11251661081901	2.82177978024912	2.37917317217225	2.0886105450814	1.11906335752362	1.75625377664924	2.30334716568391	-0.459597234591982	0.701982109266293	0.998431161219273
Merged-chr8-109563319-2	chr8	109563219	109563419	+	796.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_151644, intron 1 of 26)	intron (NR_151644, intron 1 of 26)	2542.0	NR_151644	64340.0	Mm.23705	NM_178380	ENSMUSG00000037993	Dhx38	5730550P09Rik|AI325984|AW540902|Ddx38|KIAA0224|Prp16	DEAH (Asp-Glu-Ala-His) box polypeptide 38	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132510548-4	chr4	132510440	132510640	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144907)	promoter-TSS (NM_144907)	-84.0	NM_144907	230784.0	Mm.23608	NM_144907	ENSMUSG00000028893	Sesn2	HI95|SEST2|Ses2	sestrin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-22313454-4	chr9	22313358	22313558	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5820.0	NM_145612	235050.0	Mm.306038	NM_145612	ENSMUSG00000066829	Zfp810	BC005471	zinc finger protein 810	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-149840378-2	chr1	149840278	149840478	+	726.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008869, intron 17 of 17)	intron (NM_008869, intron 17 of 17)	82061.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-95703417-3	chr16	95703338	95703538	+	996.7333369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011809, intron 1 of 9)	intron (NM_011809, intron 1 of 9)	1031.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-42246561-2	chr13	42246461	42246661	+	818.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-54915.0	NM_010104	13614.0	Mm.14543	NM_010104	ENSMUSG00000021367	Edn1	ET-1|PPET1|preproET	endothelin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-57700318-2	chr9	57700218	57700418	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_009992, exon 2 of 7)	exon (NM_009992, exon 2 of 7)	2705.0	NM_001136059	13076.0	Mm.14089	NM_009992	ENSMUSG00000032315	Cyp1a1	AHH|AHRR|CP11|CYPIA1|P450-1	cytochrome P450, family 1, subfamily a, polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-79859135-1	chr7	79859035	79859235	+	805.0	f0_balb.idr	Intergenic	Intergenic	-10925.0	NM_008486	16790.0	Mm.4487	NM_008486	ENSMUSG00000039062	Anpep	AP-M|AP-N|Apn|Cd13|P150	alanyl (membrane) aminopeptidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69682047-4	chr11	69681941	69682141	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163571)	promoter-TSS (NM_001163571)	43.0	NM_001163571	80886.0	Mm.284592	NM_030702	ENSMUSG00000005204	Senp3	AA408656|Smt3ip|Smt3ip1	SUMO/sentrin specific peptidase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85365900-2	chr12	85365800	85366000	+	825.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026775, intron 1 of 4)	intron (NM_026775, intron 1 of 4)	8817.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-49860255-2	chr16	49860155	49860355	+	746.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010581, intron 1 of 9)	intron (NM_010581, intron 1 of 9)	4601.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-55372669-2	chr13	55372569	55372769	+	828.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360714, intron 1 of 14)	intron (NM_001360714, intron 1 of 14)	2937.0	NM_016758	51791.0	Mm.1426	NM_016758	ENSMUSG00000052087	Rgs14	RPIP1	regulator of G-protein signaling 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-58067385-3	chr13	58067284	58067484	+	986.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195075, intron 6 of 16)	intron (NM_001195075, intron 6 of 16)	35044.0	NM_001195075	100503085.0	Mm.379256	NM_001195075	ENSMUSG00000014164	Klhl3	7530408C15Rik|AI430941|EG627648	kelch-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-132252745-4	chr2	132252667	132252867	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011045, intron 1 of 5)	CpG	413.0	NM_011045	18538.0	Mm.7141	NM_011045	ENSMUSG00000027342	Pcna	-	proliferating cell nuclear antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-34887536-4	chr18	34887436	34887636	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	26329.0	NM_007913	13653.0	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-51493318-2	chr10	51493218	51493418	+	938.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291894, intron 5 of 8)	intron (NM_001291894, intron 5 of 8)	2420.0	NM_013532	14728.0	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52712048-2	chr13	52711948	52712148	+	850.416626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45157.0	NR_027893	105404.0	Mm.184173	NR_027893		BB123696	-	expressed sequence BB123696	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-136884706-4	chr4	136884644	136884844	+	852.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009777, intron 1 of 2)	intron (NM_009777, intron 1 of 2)	1433.0	NM_009777	12260.0	Mm.2570	NM_009777	ENSMUSG00000036905	C1qb	-	complement component 1, q subcomponent, beta polypeptide	protein-coding	2.05628253255266	2.19626032662316	1.22241783647291	1.7907737025386	2.41712297218329	2.44450063483018	1.22879920625157	2.46390096878298	0.912429878224624	0.383087279644181	0.873930254585267
Merged-chr16-43363897-1	chr16	43363797	43363997	+	809.0	f0_c57.idr	intron (NM_181058, intron 2 of 6)	intron (NM_181058, intron 2 of 6)	56299.0	NR_046026	626693.0	Mm.447083	NR_046026	ENSMUSG00000085499	Gm15713	-	predicted gene 15713	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115074345-2	chr11	115074223	115074423	+	613.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11B|LTR|ERVK	-12284.0	NM_172050	217306.0	Mm.222667	NM_172050	ENSMUSG00000048498	Cd300e	BC034097|CLM2|Cd300le|TREM5	CD300E molecule	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-88573505-2	chr4	88573405	88573605	+	600.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1707.0	NM_206975	404549.0	Mm.377947	NM_206975	ENSMUSG00000095896	Ifna14	-	interferon alpha 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-39549070-2	chr6	39548970	39549170	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172477, intron 1 of 18)	ID|SINE|ID	8764.0	NM_172477	209773.0	Mm.440021	NM_172477	ENSMUSG00000038456	Dennd2a	B930096L08Rik|C130031G22|mKIAA1277	DENN/MADD domain containing 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167675771-2	chr2	167675671	167675871	+	849.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13144.0	NM_009883	12608.0	Mm.439656	NM_009883	ENSMUSG00000056501	Cebpb	C/EBPbeta|CRP2|IL-6DBP|LAP|LIP|NF-IL6|NF-M|Nfil6	CCAAT/enhancer binding protein (C/EBP), beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-68279611-3	chr10	68279524	68279724	+	852.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023598)	promoter-TSS (NM_023598)	-898.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34970495-2	chr17	34970395	34970595	+	698.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_010479, exon 1 of 1)	exon (NM_010479, exon 1 of 1)	1661.0	NM_010479	193740.0	Mm.6388	NM_010479	ENSMUSG00000091971	Hspa1a	Hsp70-3|Hsp70.3|Hsp72|hsp68|hsp70A1	heat shock protein 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153544052-4	chr2	153543975	153544175	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14104.0	NM_001134300	329540.0	Mm.50600	NM_001001986	ENSMUSG00000061411	Nol4l	4931410H15|8430427H17Rik|AI429157|Gm1636	nucleolar protein 4-like	protein-coding	2.22313103566048	2.39153425943115	2.06063351355702	1.49832873284608	2.14406675401772	1.32367264581217	2.85177267706451	2.25454868813913	0.422242350075263	0.663896758331164	0.991727188060023
Merged-chr13-107857212-4	chr13	107857111	107857311	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 2 of 14)	intron (NM_145456, intron 2 of 14)	32853.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-4370654-3	chr7	4370530	4370730	+	913.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163014, intron 6 of 7)	MTA_Mm|LTR|ERVL-MaLR	27114.0	NM_001163014	243816.0	Mm.248662	NM_001163014	ENSMUSG00000078810	Gp6	9830166G18Rik|Gm469|Gpvi	glycoprotein 6 (platelet)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-5875635-4	chr13	5875561	5875761	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14172.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-114592223-1	chr5	114592123	114592323	+	563.0	f1_c57bl6.idr	intron (NM_001004180, intron 1 of 2)	intron (NM_001004180, intron 1 of 2)	23972.0	NM_001004180	433940.0	Mm.194212	NM_001004180	ENSMUSG00000041930	Fam222a	-	family with sequence similarity 222, member A	protein-coding	0.401470918127246	0.0202130807476744	0.0138677905382487	0.461437280916718	0.00196381641368062	0.0216389752292746	0.919440330803929	0.00981019669322727	0.50584554276208	0.817546795505468	1
Merged-chr7-24395065-3	chr7	24394877	24395077	+	903.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4651.0	NM_028047	71997.0	Mm.150977	NM_028047	ENSMUSG00000002210	Smg9	1500002O20Rik|AI429693|N28092	smg-9 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	1.27709087412887	0.904361979709678	1.59677240102077	1.14113125277834	1.19327666276304	0.910448002068364	0.684224307370243	0.674723966081316	-1.73011931224966	0.236027368967292	0.732629278941764
Merged-chr16-92058248-4	chr16	92058135	92058335	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017391)	promoter-TSS (NM_017391)	-87.0	NM_017391	53881.0	Mm.217354	NM_017391	ENSMUSG00000089774	Slc5a3	AA623876|BF642829|Smit1	solute carrier family 5 (inositol transporters), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-175936615-4	chr1	175936536	175936736	+	715.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16307.0	NM_001290692	226720.0	Mm.11282	NM_001290692	ENSMUSG00000104158	Becn2	Beclin-2|Gm104	beclin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117684892-4	chr10	117684790	117684990	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_027468, exon 9 of 9)	3' UTR (NM_027468, exon 9 of 9)	25868.0	NM_010786	17246.0	Mm.22670	NM_010786	ENSMUSG00000020184	Mdm2	1700007J15Rik|AA415488|Mdm-2	transformed mouse 3T3 cell double minute 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-87745409-4	chr6	87745323	87745523	+	966.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159697, intron 2 of 7)	intron (NM_001159697, intron 2 of 7)	14554.0	NM_001159697	58229.0	Mm.333229	NM_021418	ENSMUSG00000068263	Efcc1	Ccdc48	EF hand and coiled-coil domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-67933981-4	chr18	67933860	67934060	+	999.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172631, intron 1 of 5)	CpG	787.0	NM_172631	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	-1.84362945061595	-1.81329140012928	-1.67810947190254	-1.83000206547234	-1.84149977556685	-1.81130325271815	-1.67603257143677	-1.82865309133977	0.037684011990387	0.991491645451152	1
Merged-chr7-144971193-4	chr7	144971102	144971302	+	920.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31277.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	-0.377541231377224	-0.359492162509269	0.74852505072549	-0.36989720375018	-0.204028777238148	-0.358181586045951	-0.364046914771789	-0.17414454929735	-2.26817447096842	0.34535890429097	1
Merged-chr18-75694961-2	chr18	75694861	75695061	+	642.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_201354, intron 1 of 11)	intron (NM_201354, intron 1 of 11)	2735.0	NM_201354	269037.0	Mm.36745	NM_201354	ENSMUSG00000052928	Ctif	Gm672	CBP80/20-dependent translation initiation factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-19225973-2	chr5	19225873	19226073	+	703.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_102342, intron 1 of 2)	intron (NR_102342, intron 1 of 2)	582.0	NR_102341	70832.0	Mm.398993	NR_102341	ENSMUSG00000097626	4921504A21Rik	-	RIKEN cDNA 4921504A21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-107589035-4	chr8	107588937	107589137	+	801.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010817)	promoter-TSS (NM_010817)	-555.0	NM_010817	17463.0	Mm.18347	NM_010817	ENSMUSG00000039067	Psmd7	AW107203|Mov-34|Mov34	proteasome (prosome, macropain) 26S subunit, non-ATPase, 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-47013044-1	chr14	47012944	47013144	+	662.0	f0_balb.idr	intron (NM_001163433, intron 1 of 11)	intron (NM_001163433, intron 1 of 11)	11704.0	NM_001163433	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	-0.918919911529996	-0.904045978146816	-0.912626963484136	-0.914993021245423	-0.250910483952844	-0.704998942498706	-0.911950517246838	-0.914579703111691	3.08549571023071	0.305375552116377	1
Merged-chr2-26188747-4	chr2	26188642	26188842	+	911.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Rod|LINE|L1	17833.0	NM_001039653	16871.0	Mm.386765	NM_010711	ENSMUSG00000026934	Lhx3	Lim3|P-LIM|mLIM3|mLim-3	LIM homeobox protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-24920750-2	chr3	24920650	24920850	+	645.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13B|LTR|ERVK	-136744.0	NM_001326288	635702.0	Mm.448351	NM_001326288	ENSMUSG00000102758	Naaladl2	2810043G22Rik|EG635702|Gm1021	N-acetylated alpha-linked acidic dipeptidase-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-171302469-2	chr2	171302369	171302569	+	591.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	570662.0	NM_001163686	76829.0	Mm.41633	NM_029761	ENSMUSG00000027560	Dok5	2700055C10Rik	docking protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-114263436-2	chr6	114263336	114263536	+	705.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19199.0	NM_178703	232333.0	Mm.5260	NM_178703	ENSMUSG00000030310	Slc6a1	A730043E01|GABATHG|GABATR|GAT-1|Gabt|Gabt1|Gat1|XT-1|Xtrp1	solute carrier family 6 (neurotransmitter transporter, GABA), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-37360798-4	chr3	37360692	37360892	+	841.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008006, intron 1 of 2)	intron (NM_008006, intron 1 of 2)	12139.0	NM_008006	14173.0	Mm.473689	NM_008006	ENSMUSG00000037225	Fgf2	Fgf-2|Fgfb|bFGF	fibroblast growth factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-73584155-2	chr12	73584055	73584255	+	789.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001313977)	promoter-TSS (NM_001313977)	-641.0	NM_001313977	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-23415963-4	chr5	23415878	23416078	+	796.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18375.0	NR_040469	269630.0	Mm.425231	NR_040469	ENSMUSG00000073147	5031425E22Rik	-	RIKEN cDNA 5031425E22 gene	ncRNA	1.12907749620084	3.12822399396679	0.950116509437167	1.78154589410828	2.48022368799911	2.46235660600055	0.957936757603581	0.926948359025252	-0.340959984601534	0.865803166025022	0.998431161219273
Merged-chr13-45370485-1	chr13	45370385	45370585	+	849.0	f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	-19257.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	0.566065927886552	0.41671852708018	0.532551427733446	0.380704895844671	0.574101657817004	0.242771231915966	0.23758776575545	0.625048332558663	-0.276068688292044	0.875699659384767	1
Merged-chr17-31835550-2	chr17	31835450	31835650	+	845.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20254.0	NM_010831	17691.0	Mm.290941	NM_010831	ENSMUSG00000024042	Sik1	Hrt-20|Msk|Sik|Sik-1|Snf1lk	salt inducible kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5483764-2	chr17	5483664	5483864	+	830.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_073378)	promoter-TSS (NR_073378)	-695.0	NR_073378	666919.0		NR_073378		Gm8363	EG666919	non-SMC condensin II complex, subunit H2 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-77684845-2	chr11	77684745	77684945	+	739.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-1294.0	NM_001024205	68564.0	Mm.428996	NM_001024205	ENSMUSG00000037857	Nufip2	1110001M19Rik|9530056D24Rik|AI256692|AI461731|PIG1|mKIAA1321	nuclear fragile X mental retardation protein interacting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-52268348-4	chr3	52268221	52268421	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019739)	promoter-TSS (NM_019739)	-16.0	NM_019739	56458.0	Mm.29891	NM_019739	ENSMUSG00000044167	Foxo1	AI876417|Afxh|FKHR|Fkhr1|Foxo1a	forkhead box O1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-41552973-3	chr3	41552873	41553073	+	986.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2761.0	NM_001130184	269424.0	Mm.286285	NM_172303	ENSMUSG00000025764	Jade1	AU041499|D530048A03Rik|Phf17|mKIAA1807	jade family PHD finger 1	protein-coding	-0.830763420631915	-0.607135855854967	-0.823062620430963	-0.825949503812935	-0.830045615759914	-0.0300785506937921	-0.822239121149566	-0.8254444743203	2.3374437286744	0.422031045616707	1
Merged-chr14-63459923-1	chr14	63459823	63460023	+	633.0	f1_c57bl6.idr	intron (NM_177628, intron 3 of 3)	intron (NM_177628, intron 3 of 3)	23529.0	NM_177628	219148.0	Mm.37882	NM_177628	ENSMUSG00000035095	Fam167a	A030013D21	family with sequence similarity 167, member A	protein-coding	0.684001000209578	1.48168431094644	1.54039765490783	0.704895933211787	1.59372515405832	0.736135395633638	0.720606564039818	1.86070546848341	0.566824640884426	0.715530401513816	0.998431161219273
Merged-chr6-38534804-4	chr6	38534694	38534894	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025363)	promoter-TSS (NM_025363)	-67.0	NM_025363	66117.0	Mm.158971	NM_025363	ENSMUSG00000019689	Fmc1	1110001J03Rik	formation of mitochondrial complex V assembly factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-56980213-4	chr1	56980107	56980307	+	759.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358580)	promoter-TSS (NM_001358580)	41.0	NM_001358580	212712.0	Mm.145599	NM_139146	ENSMUSG00000038331	Satb2	mKIAA1034	special AT-rich sequence binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-24247549-2	chr18	24247449	24247649	+	848.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361200, intron 4 of 12)	RMER4B|LTR|ERVK	41555.0	NM_001160404	14423.0	Mm.30249	NM_013814	ENSMUSG00000000420	Galnt1	-	polypeptide N-acetylgalactosaminyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-67426719-4	chr5	67426611	67426811	+	999.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164806, intron 1 of 4)	CpG	1088.0	NM_001164806	666938.0	Mm.101339	NM_001164806	ENSMUSG00000092060	Bend4	D330027G24Rik|EG666938	BEN domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-140712906-3	chr6	140712761	140712961	+	686.200012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	85976.0	NM_001309436	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-11589026-4	chr2	11588924	11589124	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_152824, exon 8 of 12)	exon (NM_152824, exon 8 of 12)	14175.0	NM_152824	76938.0	Mm.182769	NM_152824	ENSMUSG00000037197	Rbm17	2700027J02Rik	RNA binding motif protein 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-103046946-4	chr14	103046867	103047067	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008392)	promoter-TSS (NM_008392)	-45.0	NM_008392	16365.0	Mm.4662	NM_008392	ENSMUSG00000022126	Acod1	AI323667|CAD|Irg1	aconitate decarboxylase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-43380289-2	chr11	43380189	43380389	+	999.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5828.0	NR_029558	387164.0		NR_029558	ENSMUSG00000065601	Mir146	Mirn146|miR-146a|mmu-mir-146	microRNA 146	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-115635137-2	chr13	115635037	115635237	+	612.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	-533173.0	NM_001033228	109700.0	Mm.317280	NM_001033228	ENSMUSG00000042284	Itga1	CD49A|E130012M19Rik|Vla1	integrin alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-67839111-4	chr5	67839009	67839209	+	890.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038999, intron 1 of 36)	MTD|LTR|ERVL-MaLR	8322.0	NM_009727	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-48411532-2	chr17	48411432	48411632	+	814.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_207219, intron 3 of 5)	intron (NM_207219, intron 3 of 5)	1082.0	NM_001357904	106821.0	Mm.203943	NM_207219	ENSMUSG00000040771	Oard1	AI314976|AW558560	O-acyl-ADP-ribose deacylase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115602535-1	chr11	115602435	115602635	+	570.0	f1_balb.idr	intron (NM_173048, intron 1 of 16)	intron (NM_173048, intron 1 of 16)	1381.0	NM_001252067	260302.0	Mm.119479	NM_173048	ENSMUSG00000020740	Gga3	C230037M19Rik|mKIAA0154	golgi associated, gamma adaptin ear containing, ARF binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-3189119-7	chr11	3189013	3189213	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030207, intron 1 of 32)	intron (NM_030207, intron 1 of 32)	4350.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45453550-3	chr7	45453451	45453651	+	864.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030678, intron 14 of 15)	B3A|SINE|B2	6335.0	NM_010240	14325.0	Mm.30357	NM_010240	ENSMUSG00000050708	Ftl1	Ftl|Ftl-1|L-ferritin	ferritin light polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125604360-7	chr6	125604233	125604433	+	822.1904910000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011708, exon 15 of 52)	exon (NM_011708, exon 15 of 52)	51385.0	NM_011708	22371.0	Mm.22339	NM_011708	ENSMUSG00000001930	Vwf	6820430P06Rik|AI551257|B130011O06Rik|C630030D09|F8VWF|VWD	Von Willebrand factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-80113082-4	chr12	80113018	80113218	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007564)	promoter-TSS (NM_007564)	-105.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	6.93189001102411	6.39817001733017	6.58088249571566	6.42599829148977	6.89567087390369	6.63932601860624	6.61965286121669	6.30024954771316	0.0266273665512871	0.89874614698096	0.998431161219273
Merged-chr19-34772971-4	chr19	34772865	34773065	+	868.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25854.0	NM_172838	240638.0	Mm.74636	NM_172838	ENSMUSG00000009378	Slc16a12	3230401A21|AW210596	solute carrier family 16 (monocarboxylic acid transporters), member 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-144470790-4	chr7	144470686	144470886	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_007803, exon 1 of 18)	5' UTR (NM_007803, exon 1 of 18)	149.0	NM_007803	13043.0	Mm.205601	NM_007803	ENSMUSG00000031078	Cttn	1110020L01Rik|Ems1	cortactin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-121498842-10	chr10	121498728	121498928	+	978.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22578.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	0.812232013910494	0.524844780194222	0.513176346606865	1.13250277556268	1.26066820932837	0.52744774861723	0.515767296167085	1.67278887427287	1.4201994826085	0.398487366778835	0.884724542304305
Merged-chr4-56222619-4	chr4	56222521	56222721	+	975.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	518804.0	NM_025271	11471.0	Mm.251434	NM_025271	ENSMUSG00000070980	Actl7b	Gm26657|Tact1	actin-like 7b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-11488815-2	chr2	11488715	11488915	+	581.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133232, intron 5 of 14)	intron (NM_133232, intron 5 of 14)	13275.0	NM_001177754	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-183599448-4	chr1	183599333	183599533	+	896.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-149544.0	NR_151520	102637191.0	Mm.417076	NR_151520	ENSMUSG00000103305	Gm34068	-	predicted gene, 34068	ncRNA	1.08488348353644	0.956347395715308	1.73466719395294	1.78230180045294	1.60275251248787	1.81643076020325	1.63131980138158	0.928887389274916	0.292703688137286	0.818392161384812	0.998431161219273
Merged-chr4-63591831-2	chr4	63591731	63591931	+	750.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	8933.0	NM_001354647	670833.0	Mm.32213	NM_001354647	ENSMUSG00000084782	Gm11213	-	predicted gene 11213	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119039332-2	chr11	119039232	119039432	+	868.333374	f1_balb.idr|f1_c57bl6.idr	exon (NM_013926, exon 5 of 5)	exon (NM_013926, exon 5 of 5)	1581.0	NM_013926	30951.0	Mm.99953	NM_013926	ENSMUSG00000025578	Cbx8	Pc3	chromobox 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-45056475-4	chr19	45056371	45056571	+	918.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001178013)	TTS (NM_001178013)	8895.0	NM_001362381	94280.0	Mm.36169	NM_053197	ENSMUSG00000025212	Sfxn3	-	sideroflexin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-99602940-4	chr5	99602846	99603046	+	841.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 1 of 3)	intron (NR_030692, intron 1 of 3)	126114.0	NR_030692	319818.0	Mm.295233	NR_030692	ENSMUSG00000089809	A930011G23Rik	-	RIKEN cDNA A930011G23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-6767667-2	chr18	6767567	6767767	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_181070, intron 1 of 6)	intron (NM_181070, intron 1 of 6)	2500.0	NM_001278447	19330.0	Mm.132802	NM_181070	ENSMUSG00000073639	Rab18	AA959686	RAB18, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33080230-4	chr16	33080130	33080330	+	735.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172823, intron 6 of 16)	intron (NM_172823, intron 6 of 16)	17709.0	NM_172823	239833.0	Mm.131951	NM_172823	ENSMUSG00000022802	Lmln	5330415H22Rik|AI465495	leishmanolysin-like (metallopeptidase M8 family)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-78237307-4	chr13	78237203	78237403	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_045195)	TTS (NR_045195)	-38430.0	NM_010151	13865.0	Mm.439653	NM_010151	ENSMUSG00000069171	Nr2f1	COUP-TF1|COUP-TFI|COUPTFA|EAR-3|EAR3|Erbal3|SVP44|Tcfcoup1	nuclear receptor subfamily 2, group F, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-5607619-6	chr15	5607523	5607723	+	955.8472289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	111305.0	NR_045274	71432.0	Mm.291087	NR_045274	ENSMUSG00000110018	5430437J10Rik	-	RIKEN cDNA 5430437J10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-123926826-2	chr9	123926726	123926926	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41866.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-32279673-3	chr19	32279559	32279759	+	905.2000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168525, intron 2 of 9)	intron (NM_001168525, intron 2 of 9)	-68646.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-102907701-4	chr14	102907601	102907801	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	74931.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-7557443-4	chr19	7557352	7557552	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_139269)	promoter-TSS (NM_139269)	-7.0	NM_139269	225845.0	Mm.274810	NM_139269	ENSMUSG00000060675	Pla2g16	AdPLA|C78643|HRSL3|Hrasls3|Hrev107|MLP-3	phospholipase A2, group XVI	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-75517400-4	chr10	75517308	75517508	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175133)	promoter-TSS (NM_175133)	-27.0	NM_175133	68778.0	Mm.29382	NM_175133	ENSMUSG00000033416	Gucd1	1110038D17Rik	guanylyl cyclase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-33242108-2	chr2	33242008	33242208	+	744.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011923, intron 2 of 4)	intron (NM_011923, intron 2 of 4)	26147.0	NM_011923	26360.0	Mm.208919	NM_011923	ENSMUSG00000004105	Angptl2	AI593246|AW260363|Arp2	angiopoietin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3512621-2	chr4	3512508	3512708	+	644.5	f0_c57.idr|f1_balb.idr	Intergenic	L1MB3|LINE|L1	-24482.0	NR_037306	100499523.0		NR_037306	ENSMUSG00000094253	Mir3471-2	mmu-mir-3471-2	microRNA 3471-2	ncRNA	2.30715969154682	2.62536114132469	0.966548575236199	0.943324963295044	1.14641495542877	2.47767346297731	0.973029071236586	1.88464275912123	-0.401821972069366	0.753213342142561	0.998431161219273
Merged-chr11-109377537-4	chr11	109377414	109377614	+	795.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010303, intron 2 of 3)	MTD|LTR|ERVL-MaLR	-13860.0	NR_038097	100036768.0	Mm.467767	NR_038097	ENSMUSG00000056687	Gm11696	-	predicted gene 11696	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-35826374-2	chr12	35826274	35826474	+	621.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-99247.0	NM_207531	403205.0	Mm.190508	NM_207531	ENSMUSG00000036231	Agr3	BCMP11|E030025L21Rik|Gm888	anterior gradient 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101907129-4	chr7	101907046	101907246	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081679)	promoter-TSS (NM_001081679)	-787.0	NM_001081679	791260.0	Mm.475469	NM_001081679	ENSMUSG00000078630	Tomt	Comt2|F930017I19Rik	transmembrane O-methyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-33281033-2	chr12	33280932	33281132	+	882.541626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-21483.0	NM_001033436	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	-0.625508601687729	-0.272288051562982	-0.618867171823098	-0.106240413974077	-0.484351224868395	-0.614876013373777	-0.618150219752526	-0.620933515800438	-2.3283019233827	0.386188014885701	1
Merged-chr16-93767682-3	chr16	93767571	93767771	+	707.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357118, intron 17 of 35)	intron (NM_001357118, intron 17 of 35)	27230.0	NR_151466	102633000.0	Mm.443436	NR_151466		2310043M15Rik	-	RIKEN cDNA 2310043M15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-75825118-1	chr13	75825018	75825218	+	749.5	f0_balb.idr	Intergenic	Intergenic	-14767.0	NM_001360151	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	0.154417167756779	0.632147822971612	0.025033800199691	0.02094577495722	0.575044230559645	0.0315326587598694	0.0262029514058784	0.323581205222521	0.173330342850131	0.934270576590767	1
Merged-chr5-122274953-4	chr5	122274824	122275024	+	979.6124880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9474.0	NM_177242	320717.0	Mm.489670	NM_177242	ENSMUSG00000038582	Pptc7	9130017A15Rik|AA672638|AI848390|TA-PP2C	PTC7 protein phosphatase homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-86658749-2	chr6	86658649	86658849	+	555.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010751, intron 3 of 5)	intron (NM_010751, intron 3 of 5)	10410.0	NM_010751	17119.0	Mm.279580	NM_010751	ENSMUSG00000001156	Mxd1	AW122478|Mad|Mad1	MAX dimerization protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-87624997-2	chr1	87624897	87625097	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110192, intron 1 of 26)	intron (NM_001110192, intron 1 of 26)	4685.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-105973436-2	chr1	105973277	105973477	+	686.200012	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16905.0	NR_151625	635504.0	Mm.359717	NR_151625		Gm7160	EG635504	predicted gene 7160	ncRNA	1.86039984499095	2.31461593395079	1.16524192773791	2.16768429828952	2.15571815082068	1.97770788851936	1.17058221470936	1.8516489687806	-0.292147341669079	0.790666130110186	0.998431161219273
Merged-chr2-60809618-4	chr2	60809547	60809747	+	905.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001141932, intron 2 of 14)	intron (NM_001141932, intron 2 of 14)	71791.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-98484121-4	chr15	98484004	98484204	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1421.0	NM_010679	16770.0	Mm.5074	NM_010679	ENSMUSG00000022991	Lalba	AW208827|Lyzg	lactalbumin, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81387908-2	chr10	81387808	81388008	+	812.125	f1_balb.idr|f1_c57bl6.idr	exon (NM_133964, exon 5 of 5)	exon (NM_133964, exon 5 of 5)	1561.0	NR_105878	102466763.0		NR_105878	ENSMUSG00000098811	Mir6913	Gm27788|mmu-mir-6913	microRNA 6913	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-47306528-3	chr18	47306411	47306611	+	966.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311097, intron 1 of 17)	intron (NM_001311097, intron 1 of 17)	62357.0	NM_018744	20358.0	Mm.40909	NM_018744	ENSMUSG00000019647	Sema6a	A730020P05Rik|AI851735|Sema6A-1|Semaq|VIa	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-97534560-3	chr9	97534476	97534676	+	978.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022319, intron 6 of 17)	intron (NM_022319, intron 6 of 17)	-164618.0	NM_030219	78911.0	Mm.108347	NM_030219	ENSMUSG00000032451	Trim42	4930486B16Rik	tripartite motif-containing 42	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117092895-3	chr11	117092809	117093009	+	871.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15561.0	NR_105853	102465258.0		NR_105853	ENSMUSG00000104740	Mir6516	mmu-mir-6516	microRNA 6516	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-34642583-4	chr4	34642470	34642670	+	934.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151507, intron 8 of 19)	MTE2b|LTR|ERVL-MaLR	27613.0	NM_181406	109093.0	Mm.22363	NM_181406	ENSMUSG00000028292	Rars2	1500002I10Rik|PRO1992|Rarsl	arginyl-tRNA synthetase 2, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-111045020-1	chr5	111044920	111045120	+	1000.0	f1_balb.idr	intron (NM_001267622, intron 2 of 22)	intron (NM_001267622, intron 2 of 22)	40876.0	NR_030482	735278.0		NR_030482	ENSMUSG00000076163	Mir701	Mirn701|mir-701|mmu-mir-701	microRNA 701	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-108478865-2	chr9	108478765	108478965	+	683.833313	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008483)	promoter-TSS (NM_008483)	-997.0	NM_008483	16779.0	Mm.27560	NM_008483	ENSMUSG00000052911	Lamb2	AW211941|Lamb-2|Lams|npht	laminin, beta 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-59736988-2	chr9	59736888	59737088	+	768.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001172071, exon 3 of 3)	3' UTR (NM_001172071, exon 3 of 3)	13661.0	NM_001172069	71599.0	Mm.279070	NM_027838	ENSMUSG00000051705	Senp8	9130010J17Rik|AU020827|Den1|Nedp1|Prsc2	SUMO/sentrin specific peptidase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-9507267-4	chr18	9507157	9507357	+	860.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57103.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-144587068-2	chr7	144586968	144587168	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4632.0	NM_010175	14082.0	Mm.5126	NM_010175	ENSMUSG00000031077	Fadd	Mort1/FADD	Fas (TNFRSF6)-associated via death domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-170218673-4	chr1	170218581	170218781	+	895.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3274.0	NM_010633	16589.0	Mm.209150	NM_010633	ENSMUSG00000026667	Uhmk1	4732477C12Rik|4930500M09Rik|AA673513|AI449218|AU021979|C820018A03Rik|KIS|Kist|P-CIP2	U2AF homology motif (UHM) kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88407200-4	chr3	88407115	88407315	+	930.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025928, intron 1 of 4)	intron (NM_025928, intron 1 of 4)	3182.0	NM_001310605	67037.0	Mm.36715	NM_025928	ENSMUSG00000028066	Pmf1	2600009M07Rik|AL033286|AW060657	polyamine-modulated factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-111687845-4	chr4	111687730	111687930	+	916.68335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32180.0	NM_026470	67946.0	Mm.275526	NM_026470	ENSMUSG00000034401	Spata6	1700062C23Rik|AI790763|Hash|KRP|Mash	spermatogenesis associated 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80070078-2	chr7	80069978	80070178	+	856.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045695, intron 1 of 2)	intron (NR_045695, intron 1 of 2)	5179.0	NR_045695	100859962.0	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-70122265-3	chr17	70122160	70122360	+	916.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347411, intron 2 of 14)	intron (NM_001347411, intron 2 of 14)	153187.0	NM_001347411	224997.0	Mm.311840	NM_027712	ENSMUSG00000003279	Dlgap1	4933422O14Rik|9630002F18|AI845682|AI848168|BB075781|D17Bwg0511e|GKAP/SAPAP|GKPA/SAPAP|Gkap|Sapap1|mKIAA4162	DLG associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-98140947-3	chr6	98140844	98141044	+	635.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	149161.0	NM_008601	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125364999-2	chr6	125364901	125365101	+	756.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198604, intron 14 of 16)	intron (NM_198604, intron 14 of 16)	15278.0	NM_011609	21937.0	Mm.1258	NM_011609	ENSMUSG00000030341	Tnfrsf1a	CD120a|FPF|TNF-R|TNF-R-I|TNF-R1|TNF-R55|TNF-alphaR1|TNFAR|TNFR60|TNFRI|TNFRp55|TNFalpha-R1|Tnfr-2|Tnfr1|p55|p55-R	tumor necrosis factor receptor superfamily, member 1a	protein-coding	0.431477133219817	0.458043178136365	1.05093281052489	0.442699707641228	0.947305125401422	0.459981746766649	1.06283734293375	1.11817467800716	1.59333213742406	0.372418061977902	1
Merged-chr17-24650019-5	chr17	24650041	24650241	+	819.227783	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001357796, exon 1 of 6)	exon (NM_001357796, exon 1 of 6)	164.0	NM_001357796	65962.0	Mm.21587	NM_023055	ENSMUSG00000002504	Slc9a3r2	0610011L07Rik|1200011K07Rik|2010007A20Rik|E3karp|NHERF-2|Nherf2|Octs2|Sip-1|Sip1|Sryip1|Tka-1	solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59817079-2	chr15	59816979	59817179	+	705.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-22120.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111377199-2	chr12	111377099	111377299	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_183016, exon 1 of 37)	exon (NM_183016, exon 1 of 37)	519.0	NM_183016	217866.0	Mm.27397	NM_183016	ENSMUSG00000021279	Cdc42bpb	MRCKb	CDC42 binding protein kinase beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-71897629-2	chr9	71897529	71897729	+	579.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253865, intron 3 of 14)	intron (NM_001253865, intron 3 of 14)	-1533.0	NM_001253863	21406.0	Mm.171615	NM_011544	ENSMUSG00000032228	Tcf12	A130037E08Rik|ALF1|HEB|HEBAlt|HTF-4|HTF4|ME1|REB|bHLHb20	transcription factor 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-19908026-2	chr5	19907926	19908126	+	722.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_015823, intron 1 of 21)	intron (NM_015823, intron 1 of 21)	508.0	NM_015823	50791.0	Mm.332231	NM_015823	ENSMUSG00000040003	Magi2	AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705	membrane associated guanylate kinase, WW and PDZ domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-106574554-3	chr8	106574435	106574635	+	856.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12608.0	NR_045470	68692.0	Mm.416843	NR_045470	ENSMUSG00000099139	1110028F18Rik	-	RIKEN cDNA 1110028F18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5610143-3	chr17	5610030	5610230	+	672.700012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	ORR1D2|LTR|ERVL-MaLR	117530.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-134731619-4	chr4	134731510	134731710	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27320.0	NM_207237	230815.0	Mm.18905	NM_207237	ENSMUSG00000037306	Man1c1	AI593348	mannosidase, alpha, class 1C, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-74097959-2	chr5	74097859	74098059	+	788.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4429.0	NR_031758	100313943.0	Mm.46547	NR_031758	ENSMUSG00000093355	Snora26	MBI-6	small nucleolar RNA, H/ACA box 26	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-66101676-1	chr15	66101576	66101776	+	609.0	f0_balb.idr	intron (NM_152923, intron 1 of 14)	intron (NM_152923, intron 1 of 14)	-124872.0	NM_001145096	654498.0	Mm.364550	NM_001145096	ENSMUSG00000072511	Hhla1	F930104E18Rik	HERV-H LTR-associating 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-88513429-1	chr4	88513329	88513529	+	592.0	f1_balb.idr	Intergenic	Intergenic	9365.0	NM_010510	15977.0	Mm.1245	NM_010510	ENSMUSG00000048806	Ifnb1	IFN-beta|IFNB|Ifb	interferon beta 1, fibroblast	protein-coding	-0.954405996294011	-0.939128586936942	-0.628263158555397	-0.950988910944965	-0.482468089803291	-0.936567086410499	-0.948273002289547	-0.950628393041393	0.642294036855339	0.839637034350725	1
Merged-chr11-62749701-3	chr11	62749591	62749791	+	889.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20598.0	NM_133208	170740.0	Mm.339982	NM_133208	ENSMUSG00000005267	Zfp287	B230333C16Rik|SKAT-2|Skat2|Znf287|mszf16|mszf74	zinc finger protein 287	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-122260296-4	chr7	122260197	122260397	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	-28828.0	NM_001316672	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-104339440-4	chr8	104339378	104339578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1116.0	NM_024217	68119.0	Mm.390108	NM_024217	ENSMUSG00000031875	Cmtm3	9430096L06Rik|AI413895|BNAS2|Cklfsf3	CKLF-like MARVEL transmembrane domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-21192798-3	chr16	21192681	21192881	+	875.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12014.0	NM_010143	13845.0	Mm.6972	NM_010143	ENSMUSG00000005958	Ephb3	AW456895|Cek10|Etk2|HEK2|MDK5|Sek4|Tyro6	Eph receptor B3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-63768862-2	chr5	63768762	63768962	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177006, intron 3 of 6)	intron (NM_177006, intron 3 of 6)	-43633.0	NM_029554	76261.0	Mm.38143	NM_029554	ENSMUSG00000060512	0610040J01Rik	AI662686	RIKEN cDNA 0610040J01 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3360189-4	chr12	3360088	3360288	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4944.0	NM_008445	16570.0	Mm.7688	NM_008445	ENSMUSG00000020668	Kif3c	mKIAA4058	kinesin family member 3C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-150601383-2	chr5	150601283	150601483	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001362416, exon 8 of 8)	3' UTR (NM_001362416, exon 8 of 8)	-6858.0	NM_133898	100637.0	Mm.279932	NM_133898	ENSMUSG00000041132	N4bp2l1	2410024N18Rik|AI428195|B230342M21Rik	NEDD4 binding protein 2-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-105239775-3	chr4	105239659	105239859	+	916.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	82412.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-98100717-2	chr3	98100617	98100817	+	721.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010928, intron 8 of 33)	intron (NM_010928, intron 8 of 33)	-59917.0	NM_027665	71078.0	Mm.50711	NM_027665	ENSMUSG00000043468	Adam30	4933424D07Rik|svph4	a disintegrin and metallopeptidase domain 30	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-75702915-6	chr2	75702746	75702946	+	877.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132727, intron 1 of 1)	intron (NR_132727, intron 1 of 1)	1817.0	NR_132727	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	1.29377924404683	0.682319380407595	0.670067599305495	1.72322182608181	1.30705208149336	0.911141072734232	1.20295267459641	0.662162461381347	-0.554439598848372	0.71634164929735	0.998431161219273
Merged-chr4-32574714-3	chr4	32574614	32574814	+	762.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109661, intron 3 of 4)	B3|SINE|B2	-3052.0	NR_026843	414068.0	Mm.389550	NR_026843	ENSMUSG00000086150	Bach2os	-	BTB and CNC homology 2, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35814324-1	chr17	35814224	35814424	+	639.0	f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-7389.0	NM_133662	15937.0	Mm.25613	NM_133662	ENSMUSG00000003541	Ier3	AI663993|IEX-1|cI-3|gly96	immediate early response 3	protein-coding	1.36626126052123	1.28035513773347	0.614622439627175	0.937226517471496	1.21476194915337	1.01411879972009	0.616860533388065	0.608133666375718	-0.890166581421266	0.571754307379601	0.963470249991637
Merged-chr13-37621275-2	chr13	37621175	37621375	+	705.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-204763.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-46247018-2	chr17	46246918	46247118	+	635.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009085, intron 2 of 8)	intron (NM_009085, intron 2 of 8)	1027.0	NM_009085	20016.0	Mm.3458	NM_009085	ENSMUSG00000067148	Polr1c	40kDa|AA409007|AA959927|AL024089|Polr1e|RPA40|Rpo1-1	polymerase (RNA) I polypeptide C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46310164-2	chr8	46310064	46310264	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15493.0	NM_173789	234219.0	Mm.145631	NM_173789	ENSMUSG00000047171	Helt	A830086M02|Hesl|Heslike|Mgn|megane	helt bHLH transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-54810459-5	chr1	54810443	54810643	+	941.3250119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081433, intron 2 of 27)	intron (NM_001081433, intron 2 of 27)	115844.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	1.93371058953501	1.28043733348047	2.20246564754206	1.78361508281775	2.30209627903423	2.18084181856995	2.10880599224677	1.79205950841881	0.714685160344322	0.466079297045096	0.922877006152557
Merged-chr16-17530264-2	chr16	17530164	17530364	+	783.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_026909, exon 3 of 5)	exon (NM_026909, exon 3 of 5)	788.0	NM_026909	69009.0	Mm.10174	NM_026909	ENSMUSG00000022760	Thap7	1810004B07Rik	THAP domain containing 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-113751163-8	chr11	113751033	113751233	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020006)	promoter-TSS (NM_020006)	27.0	NM_020006	56699.0	Mm.293378	NM_020006	ENSMUSG00000041598	Cdc42ep4	1500041M20Rik|Borg4|CEP4	CDC42 effector protein (Rho GTPase binding) 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-70857707-2	chr17	70857607	70857807	+	714.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4_|SINE|ID	2893.0	NR_035427	100316676.0		NR_035427	ENSMUSG00000080468	Mir1195	Mirn1195|mmu-mir-1195	microRNA 1195	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105709438-2	chr8	105709338	105709538	+	641.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001357256, exon 3 of 4)	exon (NM_001357256, exon 3 of 4)	1149.0	NM_027655	71046.0	Mm.280888	NM_027655	ENSMUSG00000013158	4933405L10Rik	-	RIKEN cDNA 4933405L10 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-4104517-4	chr5	4104415	4104615	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_020010, exon 1 of 10)	5' UTR (NM_020010, exon 1 of 10)	182.0	NM_020010	13121.0	Mm.140158	NM_020010	ENSMUSG00000001467	Cyp51	AI426508|CYPLI|Cyp51a1|Ldm|P450-14DM|P450LI	cytochrome P450, family 51	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-92652705-4	chr1	92652583	92652783	+	963.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3842.0	NM_153114	260301.0	Mm.219545	NM_153114	ENSMUSG00000044055	Otos	OTOSP	otospiralin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-28585376-4	chr2	28585276	28585476	+	897.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2097.0	NM_001290484	70239.0	Mm.274120	NM_148928	ENSMUSG00000026816	Gtf3c5	2700084A09Rik|TFIIIC63|TFiiiC2-63	general transcription factor IIIC, polypeptide 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141858238-2	chr4	141858089	141858289	+	734.5	f0_balb.idr|f1_c57bl6.idr	TTS (NM_025994)	TTS (NM_025994)	-11830.0	NM_001033875	76701.0	Mm.489680	NM_001033875	ENSMUSG00000062478	Ctrc	1810044E12Rik	chymotrypsin C (caldecrin)	protein-coding	1.72990087247819	1.02922418173286	1.81932471526609	0.748041891533931	1.09443577829628	0.783041702856682	2.01279799942958	0.750469606569225	-0.400107991860378	0.781070783724566	0.998431161219273
Merged-chr11-120617931-4	chr11	120617845	120618045	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347615)	promoter-TSS (NM_001347615)	0.0	NM_001347615	68671.0	Mm.21439	NM_024229	ENSMUSG00000025137	Pcyt2	1110033E03Rik|ET	phosphate cytidylyltransferase 2, ethanolamine	protein-coding	0.9365167663385	0.802736000853139	1.18221477048152	1.41790495241561	0.75910245584397	1.39832299666819	1.96769717923185	1.42635435709968	1.34523496318785	0.322607689050248	0.825019673042942
Merged-chr3-103130484-4	chr3	103130370	103130570	+	963.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177857, intron 1 of 18)	intron (NM_177857, intron 1 of 18)	2914.0	NM_177857	329727.0	Mm.293641	NM_177857	ENSMUSG00000007379	Dennd2c	A930010I20Rik	DENN/MADD domain containing 2C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95433639-4	chr3	95433532	95433732	+	964.8583369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009709)	promoter-TSS (NM_009709)	-758.0	NM_009709	11863.0	Mm.250265	NM_009709	ENSMUSG00000015522	Arnt	D3Ertd557e|Drnt|ESTM42|Hif1b|W08714|bHLHe2|mKIAA4051	aryl hydrocarbon receptor nuclear translocator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-34599486-4	chr19	34599378	34599578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001110517)	promoter-TSS (NM_001110517)	-51.0	NM_001110517	667373.0	Mm.371956	NM_001101605	ENSMUSG00000079339	Ifit1bl1	Gm14446|Ifit1c	interferon induced protein with tetratricpeptide repeats 1B like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-66125787-2	chr9	66125687	66125887	+	726.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019727)	promoter-TSS (NM_019727)	-824.0	NM_001359210	68250.0	Mm.27107	NM_026635	ENSMUSG00000032381	Fam96a	5730536A07Rik	family with sequence similarity 96, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-88706849-2	chr4	88706749	88706949	+	887.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15581.0	NM_008336	15974.0	Mm.377093	NM_008336	ENSMUSG00000100079	Ifnab	-	interferon alpha B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-68502415-3	chr2	68502332	68502532	+	745.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	-30451.0	NM_016866	53416.0	Mm.198414	NM_016866	ENSMUSG00000027030	Stk39	AW227544|AW556857|DCHT|RF005|Rnl5|SPAK	serine/threonine kinase 39	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-56611785-2	chr2	56611685	56611885	+	568.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-174026.0	NR_105751	102465169.0		NR_105751	ENSMUSG00000098437	Mir195b	Gm27491|mmu-mir-195b	microRNA 195b	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-83044058-3	chr17	83043963	83044163	+	657.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045094, intron 2 of 3)	intron (NR_045094, intron 2 of 3)	34162.0	NR_045094	100503434.0	Mm.187281	NR_045094		Gm19689	-	predicted gene, 19689	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-36488162-2	chr5	36488062	36488262	+	577.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_025725)	TTS (NM_025725)	3574.0	NM_025725	66717.0	Mm.42368	NM_025725	ENSMUSG00000050677	Ccdc96	4921513E08Rik	coiled-coil domain containing 96	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-99561451-4	chr12	99561341	99561541	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2400.0	NR_136760	102639404.0	Mm.396324	NR_136760	ENSMUSG00000097917	Gm26839	-	predicted gene, 26839	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-121373145-4	chr10	121373054	121373254	+	908.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029364, intron 2 of 13)	MTD|LTR|ERVL-MaLR	8064.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	1.30949985272319	0.812625692713929	1.6422634998581	1.58855359127034	0.944040771149022	0.815416792356765	1.1747140311592	1.3954363188999	-1.14133541664374	0.403761311028426	0.888897182593852
Merged-chr7-90129472-4	chr7	90129367	90129567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146194)	promoter-TSS (NM_146194)	7.0	NR_046006	78329.0	Mm.389940	NR_046006	ENSMUSG00000097162	2310010J17Rik	-	RIKEN cDNA 2310010J17 gene	ncRNA	5.01590960126735	5.41803617462775	4.95647623427471	5.58000768777963	5.99983475653289	5.34668881280807	6.21680021989479	5.67439767319613	0.665214174790043	0.022860502705107	0.196738616313297
Merged-chr9-7867616-2	chr9	7867516	7867716	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007464, intron 1 of 8)	MMERGLN-int|LTR|ERV1	5554.0	NM_007464	11796.0	Mm.2026	NM_007464	ENSMUSG00000032000	Birc3	AW107670|Api1|Api2|Birc2|C-IAP2|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF49|cIAP-1|cIAP-2|cIAP1|cIAP2	baculoviral IAP repeat-containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83351828-2	chr6	83351728	83351928	+	712.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175277, intron 2 of 3)	intron (NM_175277, intron 2 of 3)	2344.0	NM_175277	78653.0	Mm.391470	NM_175277	ENSMUSG00000045160	Bola3	1810056O20Rik	bolA-like 3 (E. coli)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-108631280-3	chr8	108631171	108631371	+	816.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1I|LTR|ERVL-MaLR	-46594.0	NR_077224	109215.0	Mm.65282	NR_077224	ENSMUSG00000110613	Lncbate1	3010033K07Rik|Lnc-BATE1	brown adipose tissue enriched long non-coding RNA 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-7482057-2	chr19	7482003	7482203	+	590.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001003934, intron 1 of 8)	intron (NM_001003934, intron 1 of 8)	1188.0	NM_001271486	20168.0	Mm.246990	NM_053076	ENSMUSG00000024758	Rtn3	RTN3-A1	reticulon 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-66776299-2	chr15	66776199	66776399	+	910.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009375, intron 41 of 47)	intron (NM_009375, intron 41 of 47)	55530.0	NM_001029841	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	-1.84436392554074	-1.52091821270385	-1.82290882857571	-1.83054882630441	-1.84220491470818	-1.81159244170985	-1.82080331928423	-1.82918127036376	-1.56828060379516	0.655578384384393	1
Merged-chr9-66543016-4	chr9	66542982	66543182	+	811.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144937, intron 6 of 14)	intron (NM_144937, intron 6 of 14)	-28489.0	NM_175206	74165.0	Mm.297998	NM_175206	ENSMUSG00000050503	Fbxl22	1110004B15Rik	F-box and leucine-rich repeat protein 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-6004973-3	chr6	6004901	6005101	+	881.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010063, intron 14 of 16)	intron (NM_010063, intron 14 of 16)	-27608.0	NR_040255	72249.0	Mm.443268	NR_040255	ENSMUSG00000085416	1700019G24Rik	-	RIKEN cDNA 1700019G24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-122339765-7	chr6	122339700	122339900	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_073364)	promoter-TSS (NR_073364)	-143.0	NR_073364	13619.0	Mm.6822	NM_007905	ENSMUSG00000040669	Phc1	AW557034|Edr|Edr1|Mph1|Rae-28|rae28	polyhomeotic 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16319429-2	chr7	16319329	16319529	+	761.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001285892)	TTS (NM_001285892)	9846.0	NM_133234	170770.0	Mm.7660	NM_133234	ENSMUSG00000002083	Bbc3	PUMA|PUMA/JFY1	BCL2 binding component 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-190928575-4	chr1	190928454	190928654	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357131)	promoter-TSS (NM_001357131)	49.0	NM_021421	52477.0	Mm.289914	NM_021421	ENSMUSG00000026634	Angel2	2610307I21Rik|5730410O10Rik|AI845692|D1Ertd396e|D1Ertd654e	angel homolog 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-57300664-2	chr2	57300564	57300764	+	559.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010274, intron 3 of 16)	intron (NM_010274, intron 3 of 16)	62282.0	NM_010274	14571.0	Mm.3711	NM_010274	ENSMUSG00000026827	Gpd2	AA408484|AI448216|AU021455|AW494132|GPDH|Gdm1|Gpd-m|Gpdh-m|TISP38	glycerol phosphate dehydrogenase 2, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-12932142-2	chr13	12932042	12932242	+	615.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR46A|LTR|ERVK	73188.0	NM_031191	18811.0	Mm.88796	NM_031191	ENSMUSG00000079092	Prl2c2	Ghd2|MRP-1|PLF-1|Plf|Plf1	prolactin family 2, subfamily c, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-40660885-1	chr19	40660785	40660985	+	772.0	f0_balb.idr	intron (NM_009848, intron 1 of 9)	intron (NM_009848, intron 1 of 9)	1115.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-96953639-3	chr15	96953538	96953738	+	854.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	66721.0	NM_001358060	69354.0	Mm.250980	NM_027052	ENSMUSG00000022464	Slc38a4	1110012E16Rik|1700012A18Rik|Ata3|mATA3|mNAT3	solute carrier family 38, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32603644-2	chr2	32603544	32603744	+	568.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025311, intron 1 of 4)	ID_B1|SINE|B4	-3341.0	NM_001289547	50935.0	Mm.88831	NM_016973	ENSMUSG00000026811	St6galnac6	ST6GalNAcVI|Siat7f	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-3226675-1	chr8	3226575	3226775	+	705.0	f1_c57bl6.idr	intron (NM_001330056, intron 2 of 21)	intron (NM_001330056, intron 2 of 21)	52942.0	NM_010568	16337.0	Mm.268003	NM_010568	ENSMUSG00000005534	Insr	4932439J01Rik|CD220|D630014A15Rik|IR|IR-A|IR-B	insulin receptor	protein-coding	0.335373980697138	-0.182589053072927	0.244974809231281	-0.190058888864772	0.167239102880267	-0.181634775078479	-0.185882162953525	-0.18949241105135	-1.48251867145354	0.541136761283134	1
Merged-chr10-118093950-3	chr10	118093835	118094035	+	759.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47852.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	2.70108314419751	3.04725135916292	1.23170899805866	3.17032317243344	1.40215533965288	1.28071789606145	2.11915369895805	2.42820533462432	-1.73581874275675	0.0851227373421421	0.448020902351155
Merged-chr14-72564135-4	chr14	72564025	72564225	+	923.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207636, intron 15 of 25)	intron (NM_207636, intron 15 of 25)	145878.0	NM_207636	319448.0	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-125696433-3	chr2	125696291	125696491	+	982.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199022, intron 1 of 11)	intron (NM_199022, intron 1 of 11)	23291.0	NM_025613	58521.0	Mm.425101	NM_025613	ENSMUSG00000091337	Eid1	2610002K20Rik|Cri1|EID-1|ORF12|PNAS-22|PTD014	EP300 interacting inhibitor of differentiation 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-79366630-2	chr8	79366530	79366730	+	642.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008539, intron 2 of 6)	intron (NM_008539, intron 2 of 6)	32838.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-86020637-4	chr2	86020507	86020707	+	824.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146578)	promoter-TSS (NM_146578)	-33.0	NM_146578	258571.0	Mm.223099	NM_146578	ENSMUSG00000045392	Olfr1033	MOR199-2	olfactory receptor 1033	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-32725250-4	chr9	32725209	32725409	+	849.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038642, intron 1 of 6)	intron (NM_001038642, intron 1 of 6)	29267.0	NM_001038642	23871.0	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	3.80619047557959	3.76143414364564	1.58373199654148	2.80163424132791	2.67232616258447	3.12981182713406	3.53575702142515	2.56427039456331	-0.371198466425154	0.624252549420679	0.980630817450287
Merged-chr6-39226065-4	chr6	39225963	39226163	+	891.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19290.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80027304-2	chr10	80027204	80027404	+	861.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347074, intron 17 of 22)	intron (NM_001347074, intron 17 of 22)	7629.0	NM_027521	70719.0	Mm.243954	NM_027521	ENSMUSG00000035697	Arhgap45	6330406L22Rik|AW539505|Ha-1|Hmha1	Rho GTPase activating protein 45	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-51821727-2	chr11	51821627	51821827	+	711.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357588, intron 10 of 12)	intron (NM_001357588, intron 10 of 12)	35754.0	NM_199299	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-80024959-5	chr15	80024798	80024998	+	700.233337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10090.0	NM_011057	18591.0	Mm.144089	NM_011057	ENSMUSG00000000489	Pdgfb	PDGF-B|Sis	platelet derived growth factor, B polypeptide	protein-coding	1.37507464422635	1.38502591326481	1.74006092489955	0.936655286155846	1.60846606117619	1.55737458994724	0.953051889183104	2.04979938428803	0.733519938712934	0.558949858498335	0.960321604678676
Merged-chr9-65205639-3	chr9	65205510	65205710	+	898.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9080.0	NM_177460	214424.0	Mm.31129	NM_177460	ENSMUSG00000032392	Parp16	ARTD15|BC055447|C79952|PARP-16	poly (ADP-ribose) polymerase family, member 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-139399366-2	chr7	139399266	139399466	+	550.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183144, intron 1 of 15)	intron (NM_183144, intron 1 of 15)	-1128.0	NM_001355162	212111.0	Mm.28308	NM_183144	ENSMUSG00000025477	Inpp5a	-	inositol polyphosphate-5-phosphatase A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-79544507-2	chr10	79544407	79544607	+	545.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001316699, intron 10 of 13)	intron (NM_001316699, intron 10 of 13)	10621.0	NM_001316699	70427.0	Mm.334193	NM_027422	ENSMUSG00000042570	Mier2	2700087H15Rik|mKIAA1193	MIER family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-55447722-2	chr12	55447622	55447822	+	642.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	44925.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-47730777-4	chr19	47730670	47730870	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026377)	promoter-TSS (NM_026377)	-986.0	NM_026377	67788.0	Mm.181610	NM_026377	ENSMUSG00000025066	Sfr1	6330577E15Rik|Meir5	SWI5 dependent recombination repair 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-112324750-4	chr5	112324658	112324858	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1611.0	NM_018783	54723.0	Mm.172947	NM_018783	ENSMUSG00000029345	Tfip11	2810002G02Rik|AF097181|AW046167|Srr1|TIP33|Tip39	tuftelin interacting protein 11	protein-coding	5.51678384742629	5.9808556377137	5.63095370308596	6.12535796447072	6.84418483302934	6.48936529163438	6.92983413467412	7.34489990177135	1.19312783515805	3.99855663710942e-07	2.98597609120574e-05
Merged-chr18-61384743-3	chr18	61384647	61384847	+	781.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133249, intron 1 of 11)	L1MB3|LINE|L1	13153.0	NR_029879	723889.0		NR_029879	ENSMUSG00000105200	Mir378a	Mir378|Mirn378|mmu-mir-378|mmu-mir-378a	microRNA 378a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-31052417-3	chr17	31052298	31052498	+	782.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16-int|LTR|ERVK	-5296.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-21790953-2	chr5	21790853	21791053	+	602.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011188, intron 2 of 12)	B1_Mur3|SINE|Alu	5670.0	NM_011188	19181.0	Mm.2462	NM_011188	ENSMUSG00000028932	Psmc2	-	proteasome (prosome, macropain) 26S subunit, ATPase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-73606965-4	chr7	73606860	73607060	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48565.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-110552504-3	chr7	110552407	110552607	+	617.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177324, intron 2 of 40)	intron (NM_177324, intron 2 of 40)	62413.0	NM_177324	319934.0	Mm.102970	NM_177324	ENSMUSG00000038371	Sbf2	4833411B01Rik|AA414977|AI317167|B430219L04Rik|Mtmr13|mMTMH1	SET binding factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125149421-3	chr6	125149327	125149527	+	929.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039669, intron 1 of 9)	intron (NM_001039669, intron 1 of 9)	4203.0	NM_001302779	320678.0	Mm.129415	NM_178787	ENSMUSG00000038271	Iffo1	4733401N06Rik|A930037G23Rik|HOM-TES-103|Iffo	intermediate filament family orphan 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34189229-2	chr17	34189129	34189329	+	675.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_013683, exon 2 of 11)	exon (NM_013683, exon 2 of 11)	1673.0	NM_013683	21354.0	Mm.482076	NM_013683	ENSMUSG00000037321	Tap1	ABC17|APT1|Abcb2|Ham-1|Ham1|MTP1|PSF1|RING4|TAP|Tap-1|Y3	transporter 1, ATP-binding cassette, sub-family B (MDR/TAP)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139383793-2	chr5	139383693	139383893	+	695.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030258, intron 1 of 1)	intron (NM_030258, intron 1 of 1)	3154.0	NM_030258	80290.0	Mm.270003	NM_030258	ENSMUSG00000044197	Gpr146	BC003323|D830046C22Rik|PGR8	G protein-coupled receptor 146	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-82541977-2	chr11	82541877	82542077	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-91376.0	NR_033582	791422.0	Mm.341562	NR_033582	ENSMUSG00000069796	Gm11426	-	predicted gene 11426	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-3535970-2	chr11	3535870	3536070	+	845.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159284, intron 3 of 21)	CpG	3322.0	NM_013870	29856.0	Mm.188516	NM_013870	ENSMUSG00000020439	Smtn	smsmo	smoothelin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-152739553-8	chr2	152739467	152739667	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	3316.0	NM_001355113	15901.0	Mm.444	NM_010495	ENSMUSG00000042745	Id1	AI323524|D2Wsu140e|Idb1|bHLHb24	inhibitor of DNA binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-48710732-2	chr12	48710632	48710832	+	561.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	-672151.0	NM_001160112	15228.0	Mm.4704	NM_008241	ENSMUSG00000020950	Foxg1	2900064B05Rik|BF-1|Bf1|Hfh9|Hfhbf1	forkhead box G1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-66324611-2	chr16	66324511	66324711	+	574.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-332507.0	NR_040512	75501.0	Mm.394300	NR_040512	ENSMUSG00000092599	1700010K23Rik	-	RIKEN cDNA 1700010K23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-128723505-2	chr4	128723405	128723605	+	656.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_018774, intron 8 of 14)	intron (NM_018774, intron 8 of 14)	-4066.0	NM_001195083	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-84986396-1	chr1	84986296	84986496	+	668.666687	f1_balb.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-51313.0	NM_027921	71781.0	Mm.158754	NM_027921	ENSMUSG00000026220	Slc16a14	1110004H10Rik	solute carrier family 16 (monocarboxylic acid transporters), member 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-77827803-2	chr9	77827703	77827903	+	792.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	73268.0	NM_010295	14629.0	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-79883716-1	chr7	79883616	79883816	+	708.0	f0_balb.idr	intron (NM_009682, intron 4 of 5)	intron (NM_009682, intron 4 of 5)	-35506.0	NM_008486	16790.0	Mm.4487	NM_008486	ENSMUSG00000039062	Anpep	AP-M|AP-N|Apn|Cd13|P150	alanyl (membrane) aminopeptidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-58033516-3	chr18	58033398	58033598	+	689.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010181, intron 55 of 64)	ORR1G|LTR|ERVL-MaLR	154820.0	NM_009194	20496.0	Mm.399997	NM_009194	ENSMUSG00000024597	Slc12a2	9330166H04Rik|Nkcc1|mBSC2|sy-ns	solute carrier family 12, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-25828647-4	chr15	25828528	25828728	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14670.0	NM_001034851	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-82930343-2	chr11	82930243	82930443	+	666.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178680, intron 13 of 19)	(CCCCG)n|Simple_repeat|Simple_repeat	19090.0	NM_178680	217012.0	Mm.295205	NM_178680	ENSMUSG00000018845	Unc45b	AA445617|Cmya4|D230041A13Rik|Unc45	unc-45 myosin chaperone B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-81585382-4	chr18	81585270	81585470	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	406710.0	NR_039589	100628596.0		NR_039589	ENSMUSG00000093036	Mir5127	mmu-mir-5127|mu-mir-5127	microRNA 5127	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-4988262-3	chr11	4988163	4988363	+	905.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001243044, intron 1 of 21)	intron (NM_001243044, intron 1 of 21)	1439.0	NM_001355660	11764.0	Mm.274816	NM_007454	ENSMUSG00000009090	Ap1b1	Adtb1|b2b1660Clo	adaptor protein complex AP-1, beta 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134540327-2	chr6	134540227	134540427	+	598.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008514, intron 2 of 22)	intron (NM_008514, intron 2 of 22)	26586.0	NM_008514	16974.0	Mm.321990	NM_008514	ENSMUSG00000030201	Lrp6	C030016K15Rik|Cd|Gw|ska26|ska<m26Jus>|skax26	low density lipoprotein receptor-related protein 6	protein-coding	1.56482651529878	2.95468859117433	0.883734237301128	0.861016483748371	1.58069108403762	1.96235693845722	1.74309720821994	0.865051538648926	-0.766845829200091	0.549488702489809	0.958850792269644
Merged-chr1-138328469-2	chr1	138328369	138328569	+	688.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54731.0	NM_177397	338375.0	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-21468587-4	chr13	21468479	21468679	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025719)	promoter-TSS (NM_025719)	-78.0	NM_025719	66707.0	Mm.116869	NM_025719	ENSMUSG00000059395	Nkapl	4921504I05Rik	NFKB activating protein-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-39558631-2	chr18	39558531	39558731	+	652.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-71386.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-46598426-4	chr18	46598321	46598521	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025698)	promoter-TSS (NM_025698)	717.0	NM_010120	13664.0	Mm.262037	NM_010120	ENSMUSG00000057561	Eif1a	C76390|Ef1a|Eftu|Eif4c|eIF-1A|eIF-4C	eukaryotic translation initiation factor 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-78013281-2	chr10	78013181	78013381	+	818.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3474.0	NM_001358793	18641.0	Mm.269649	NM_008826	ENSMUSG00000020277	Pfkl	AA407869|ATP-PFK|PFK-B|PFK-L	phosphofructokinase, liver, B-type	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-77099297-2	chr16	77099197	77099397	+	921.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013918, intron 18 of 23)	intron (NM_013918, intron 18 of 23)	85228.0	NM_013918	30940.0	Mm.40986	NM_013918	ENSMUSG00000022867	Usp25	-	ubiquitin specific peptidase 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27289206-4	chr2	27289100	27289300	+	969.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_133905, intron 11 of 29)	intron (NR_133905, intron 11 of 29)	-41897.0	NM_138665	192166.0	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91826933-2	chr16	91826833	91827033	+	886.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110276, intron 14 of 15)	intron (NM_001110276, intron 14 of 15)	97562.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-149185030-4	chr5	149184909	149185109	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001115151, intron 1 of 8)	CpG	449.0	NM_001359957	231915.0	Mm.29402	NM_001013378	ENSMUSG00000041264	Uspl1	E430026A01Rik	ubiquitin specific peptidase like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-83652609-3	chr10	83652538	83652738	+	861.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPLTR1a_Mm|LTR|ERVK	-3974.0	NM_145220	216190.0	Mm.282985	NM_145220	ENSMUSG00000020263	Appl2	Dip3b	adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98036162-4	chr11	98036091	98036291	+	749.69165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_146028)	TTS (NM_146028)	9267.0	NM_009078	19921.0	Mm.10247	NM_009078	ENSMUSG00000017404	Rpl19	-	ribosomal protein L19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-9545318-4	chr1	9545227	9545427	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021511)	promoter-TSS (NM_021511)	-81.0	NM_021511	59014.0	Mm.29061	NM_021511	ENSMUSG00000061024	Rrs1	5730466A07Rik|AA415037|D1Ertd701e|Rrr	ribosome biogenesis regulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-98531782-3	chr7	98531664	98531864	+	953.2000119999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	37542.0	NM_001113379	434215.0	Mm.323057	NM_001113379	ENSMUSG00000090958	Lrrc32	AI426318|D11S833Eh|D7H11S833E|EG434215|Garp	leucine rich repeat containing 32	protein-coding	2.52795192181333	1.90050267162828	2.91276052406896	2.11499415980549	1.87570620317217	2.76949858859508	3.01080027378281	1.32848703776514	-0.00719966777263953	0.993796745345714	0.998431161219273
Merged-chr8-3466953-2	chr8	3466853	3467053	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026951, intron 1 of 4)	intron (NM_026951, intron 1 of 4)	695.0	NM_026951	69129.0	Mm.45279	NM_026951	ENSMUSG00000069633	Pex11g	1810022F11Rik|1810049N02Rik|Pex11c|Pex11gamma	peroxisomal biogenesis factor 11 gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-69518447-1	chr9	69518347	69518547	+	685.333313	f0_balb.idr	Intergenic	Intergenic	61503.0	NR_037296	100526560.0		NR_037296	ENSMUSG00000093042	Mir3109	mir-3109|mmu-mir-3109	microRNA 3109	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26637069-2	chr17	26636969	26637169	+	897.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026170, intron 7 of 9)	intron (NM_026170, intron 7 of 9)	-39327.0	NM_025272	11974.0	Mm.22602	NM_025272	ENSMUSG00000015575	Atp6v0e	Atp6k|Atp6v0e1|M9.2	ATPase, H+ transporting, lysosomal V0 subunit E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-48566546-4	chr13	48566428	48566628	+	766.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28256.0	NR_029725	387244.0		NR_029725	ENSMUSG00000065421	Mirlet7a-1	Let-7a|Mirnlet7a|Mirnlet7a-1|let-7a-1	microRNA let7a-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-189656126-2	chr1	189656026	189656226	+	808.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081363, intron 12 of 17)	ORR1C1|LTR|ERVL-MaLR	31960.0	NM_001081363	108000.0	Mm.129746	NM_001081363	ENSMUSG00000026605	Cenpf	6530404A22Rik|AI325968|CENF|Lek1|PRO1779|mitosin	centromere protein F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-109464126-1	chr4	109464026	109464226	+	571.0	f1_balb.idr	intron (NM_013876, intron 1 of 2)	intron (NM_013876, intron 1 of 2)	12379.0	NM_013876	29864.0	Mm.392580	NM_013876	ENSMUSG00000028557	Rnf11	-	ring finger protein 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-34609578-2	chr6	34609478	34609678	+	579.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347100, intron 1 of 13)	MLT1B|LTR|ERVL-MaLR	11074.0	NM_001347100	109624.0	Mm.308134	NM_145575	ENSMUSG00000029761	Cald1	4833423D12Rik|AI195384|AV071549|AW536160|C920027I18Rik	caldesmon 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-102317172-2	chr8	102317072	102317272	+	680.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	467939.0	NM_009866	12552.0	Mm.1571	NM_009866	ENSMUSG00000031673	Cdh11	Cad11|OSF-4	cadherin 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-35950138-3	chr4	35950033	35950233	+	941.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166000, intron 7 of 8)	MLT1G1|LTR|ERVL-MaLR	-104929.0	NM_175516	242384.0	Mm.132507	NM_175516	ENSMUSG00000045083	Lingo2	B230217C06Rik|Lern3|Lrrn6c	leucine rich repeat and Ig domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-35132235-4	chr2	35132144	35132344	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290635)	promoter-TSS (NM_001290635)	10.0	NM_001290635	26920.0	Mm.231332	NM_012018	ENSMUSG00000057110	Cntrl	6720467O09Rik|AA968343|Cep1|Cep110|IB3/5|Ma2a8|b2b1468.1Clo|b2b1468Clo	centriolin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-121798503-4	chr14	121798349	121798549	+	974.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134074)	promoter-TSS (NM_134074)	-715.0	NM_134074	105445.0	Mm.378591	NM_134074	ENSMUSG00000025558	Dock9	AA959601|AW538057|B230309H04Rik|D14Wsu89e|Zizimin1|mKIAA1058	dedicator of cytokinesis 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-12171292-4	chr17	12171117	12171317	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026644, intron 2 of 8)	intron (NM_026644, intron 2 of 8)	51933.0	NM_026644	68262.0	Mm.258300	NM_026644	ENSMUSG00000023827	Agpat4	1500003P24Rik	1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)	protein-coding	3.23461802188591	3.04850400682005	2.7310953607356	3.04550889358935	3.3176800621469	2.20675517936571	2.75225574206374	2.66848229116332	-0.395705631472896	0.561592832825617	0.960362415684079
Merged-chr9-85361238-2	chr9	85361138	85361338	+	971.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34088.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-78906902-3	chr12	78906803	78907003	+	793.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013738)	promoter-TSS (NM_013738)	35.0	NM_013738	27260.0	Mm.103380	NM_013738	ENSMUSG00000021118	Plek2	-	pleckstrin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-24487939-2	chr13	24487839	24488039	+	734.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	72817.0	NM_001284520	12763.0	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-35768702-2	chr11	35768556	35768756	+	838.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145962)	promoter-TSS (NM_145962)	-839.0	NM_145962	211347.0	Mm.255044	NM_145962	ENSMUSG00000018846	Pank3	-	pantothenate kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-12037434-4	chr15	12037319	12037519	+	929.2333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41412.0	NM_011294	20024.0	Mm.41746	NM_011294	ENSMUSG00000022205	Sub1	AI842364|P15|P9|Pc4|Rpo2tc1	SUB1 homolog (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70707528-2	chr8	70707464	70707664	+	738.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9825.0	NM_001286944	16478.0	Mm.419851	NM_010592	ENSMUSG00000071076	Jund	Jund1	jun D proto-oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133751726-4	chr4	133751629	133751829	+	957.7625119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080819, intron 1 of 19)	intron (NM_001080819, intron 1 of 19)	1882.0	NM_001080819	93760.0	Mm.22478	NM_001080819	ENSMUSG00000007880	Arid1a	1110030E03Rik|BAF250a|Osa1|Smarcf1	AT rich interactive domain 1A (SWI-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-103045262-2	chr14	103045162	103045362	+	632.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1750.0	NM_008392	16365.0	Mm.4662	NM_008392	ENSMUSG00000022126	Acod1	AI323667|CAD|Irg1	aconitate decarboxylase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-57663948-1	chr3	57663848	57664048	+	642.0	f0_balb.idr	Intergenic	Intergenic	-12264.0	NM_175095	52245.0	Mm.21901	NM_175095	ENSMUSG00000036513	Commd2	1190017G07Rik|AI047739|D3Ertd176e|HSPC042	COMM domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-149326897-4	chr3	149326787	149326987	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52150.0	NR_040591	381482.0	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-172307800-1	chr1	172307700	172307900	+	611.0	f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-4567.0	NM_080419	140559.0	Mm.271717	NM_080419	ENSMUSG00000038034	Igsf8	ESTM34|EWI-2|KCT-4|PGRL	immunoglobulin superfamily, member 8	protein-coding	1.44209001625806	1.30763208905613	1.3807030634442	0.937282382144537	0.74340592654579	0.779179525158649	1.26996834036301	1.34440805794885	-0.922366509205031	0.510741306002064	0.94512318675548
Merged-chr1-39916314-4	chr1	39916218	39916418	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252202, intron 2 of 29)	ORR1B2-int|LTR|ERVL-MaLR	15405.0	NM_008696	26921.0	Mm.491139	NM_008696	ENSMUSG00000026074	Map4k4	9430080K19Rik|AU043147|AU045934|AW046177|HGK|Nik	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-152157452-2	chr4	152157352	152157552	+	686.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1415.0	NM_001301805	15206.0	Mm.57038	NM_008236	ENSMUSG00000028940	Hes2	HES-2	hes family bHLH transcription factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-22322488-3	chr9	22322383	22322583	+	741.400024	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8207.0	NR_033622	625603.0	Mm.37987	NR_033622		Gm6607	EG625603	40S ribosomal protein S20 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-91721603-2	chr6	91721503	91721703	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009320, intron 2 of 14)	intron (NM_009320, intron 2 of 14)	37536.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-11458353-4	chr8	11458233	11458433	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011227, intron 1 of 1)	intron (NM_011227, intron 1 of 1)	-19596.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-45090382-2	chr2	45090282	45090482	+	931.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355291, intron 2 of 9)	intron (NM_001355291, intron 2 of 9)	19895.0	NM_001289521	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-145371810-2	chr2	145371710	145371910	+	978.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_053195, intron 2 of 16)	intron (NM_053195, intron 2 of 16)	129199.0	NM_053195	94249.0	Mm.217171	NM_053195	ENSMUSG00000063873	Slc24a3	NCKX3	solute carrier family 24 (sodium/potassium/calcium exchanger), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-122300780-2	chr7	122300680	122300880	+	844.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001316672, intron 2 of 16)	intron (NM_001316672, intron 2 of 16)	11655.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-111234260-2	chr10	111234160	111234360	+	945.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001003717, intron 3 of 22)	intron (NM_001003717, intron 3 of 22)	-64419.0	NM_027914	71769.0	Mm.45256	NM_027914	ENSMUSG00000035759	Bbs10	1300007O09Rik|AI452285	Bardet-Biedl syndrome 10 (human)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-29297236-4	chr7	29297141	29297341	+	764.450012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6764.0	NM_013874	29861.0	Mm.101885	NM_013874	ENSMUSG00000030584	Dpf1	Neud4	D4, zinc and double PHD fingers family 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71369255-3	chr8	71369184	71369384	+	733.888916	f1_balb.idr|f1_c57bl6.idr	exon (NM_001145780, exon 8 of 9)	exon (NM_001145780, exon 8 of 9)	-2014.0	NM_029865	77090.0	Mm.440170	NM_029865	ENSMUSG00000002396	Ocel1	9430098E02Rik|AI326022|AI593544	occludin/ELL domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-67060241-3	chr6	67060152	67060352	+	860.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040278, intron 1 of 6)	intron (NR_040278, intron 1 of 6)	-22845.0	NM_007836	13197.0	Mm.72235	NM_007836	ENSMUSG00000036390	Gadd45a	AA545191|Ddit1|GADD45	growth arrest and DNA-damage-inducible 45 alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-97777293-2	chr7	97777193	97777393	+	669.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11248.0	NM_001357365	18479.0	Mm.260227	NM_011035	ENSMUSG00000030774	Pak1	AW045634|PAK-1|Paka	p21 (RAC1) activated kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-22183418-3	chr14	22183308	22183508	+	695.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028275, intron 2 of 6)	ORR1E|LTR|ERVL-MaLR	163696.0	NM_028275	76633.0	Mm.489898	NM_028275	ENSMUSG00000063458	Lrmda	1700112E06Rik|2700009F18Rik	leucine rich melanocyte differentiation associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-115527686-1	chr13	115527586	115527786	+	714.0	f1_balb.idr	Intergenic	RLTR17B_Mm|LTR|ERVK	-425722.0	NM_001033228	109700.0	Mm.317280	NM_001033228	ENSMUSG00000042284	Itga1	CD49A|E130012M19Rik|Vla1	integrin alpha 1	protein-coding	-1.04208874506389	-1.02123918224174	-1.03350334701646	-1.03824354072223	-0.885830908886505	-0.376146560785398	-1.03072700893431	-1.03783930519327	2.96529083137223	0.334292453489152	1
Merged-chr10-117709501-3	chr10	117709423	117709623	+	673.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001288586, intron 2 of 10)	intron (NM_001288586, intron 2 of 10)	1235.0	NM_010786	17246.0	Mm.22670	NM_010786	ENSMUSG00000020184	Mdm2	1700007J15Rik|AA415488|Mdm-2	transformed mouse 3T3 cell double minute 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-117959786-2	chr2	117959686	117959886	+	649.666687	f1_balb.idr|f1_c57bl6.idr	intron (NR_126479, intron 8 of 9)	intron (NR_126479, intron 8 of 9)	137858.0	NR_040631	73938.0	Mm.399107	NR_040631	ENSMUSG00000086221	4930412B13Rik	-	RIKEN cDNA 4930412B13 gene	ncRNA	1.1236185346102	1.01187790199392	2.0598631523538	1.45213911169031	1.39227699363741	1.01463589793338	2.07471831140181	1.4594076628756	0.208863762255939	0.871031607248402	0.998431161219273
Merged-chr9-85368551-4	chr9	85368452	85368652	+	845.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41402.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70489415-1	chr11	70489315	70489515	+	1000.0	f0_balb.idr	Intergenic	Intergenic	-15859.0	NM_029360	75604.0	Mm.24400	NM_029360	ENSMUSG00000018919	Tm4sf5	2010003F10Rik|AI323987	transmembrane 4 superfamily member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-64313663-2	chr15	64313563	64313763	+	771.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001276462)	promoter-TSS (NM_001276462)	-990.0	NM_001276463	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-39639879-4	chr8	39639824	39640024	+	924.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113326, intron 1 of 9)	intron (NM_001113326, intron 1 of 9)	2754.0	NM_031195	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	3.50951823676749	3.21078565686933	3.31298626957587	3.87251959459202	3.96327766778527	3.80097625773172	3.52131595450819	3.13544615859356	0.209267165170495	0.694135328195316	0.997569417625163
Merged-chr12-80407919-2	chr12	80407819	80408019	+	871.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_177267, intron 1 of 8)	B3A|SINE|B2	-16182.0	NR_028544	100217447.0	Mm.453532	NR_028544	ENSMUSG00000112285	Scarna3b	MBI-100	small Cajal body-specific RNA 3B	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-113114350-3	chr5	113114260	113114460	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172884, intron 1 of 7)	intron (NM_172884, intron 1 of 7)	24225.0	NM_001347397	243219.0	Mm.160131	NM_172884	ENSMUSG00000051339	2900026A02Rik	8430408O14Rik|A530094D01|AW539426|Gm449|Kiaa1671|mKIAA1671	RIKEN cDNA 2900026A02 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-149790047-4	chr4	149789949	149790149	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15782.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-46064634-2	chr10	46064534	46064734	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A0|LTR|ERVL-MaLR	-180114.0	NR_028274	100302593.0		NR_028274	ENSMUSG00000095118	Snord14d	Gm23710	small nucleolar RNA, C/D box 14D	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129308323-7	chr2	129308238	129308438	+	834.780945	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_040371)	TTS (NR_040371)	1634.0	NM_010554	16175.0	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-47156862-2	chr11	47156762	47156962	+	674.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011891, intron 3 of 7)	B4A|SINE|B4	222440.0	NM_011891	24052.0	Mm.338890	NM_011891	ENSMUSG00000020354	Sgcd	35kDa|delta-SG	sarcoglycan, delta (dystrophin-associated glycoprotein)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33798053-2	chr16	33797953	33798153	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010739, intron 2 of 12)	intron (NM_010739, intron 2 of 12)	4016.0	NM_010739	17063.0	Mm.3177	NM_010739	ENSMUSG00000022824	Muc13	114/A10|14/A10|AI159736|Lrrp|Ly64|NJ-1	mucin 13, epithelial transmembrane	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116107983-2	chr11	116107883	116108083	+	878.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_172570, exon 3 of 6)	exon (NM_172570, exon 3 of 6)	2252.0	NM_001205081	217333.0	Mm.347770	NM_172570	ENSMUSG00000020773	Trim47	2210023F24Rik	tripartite motif-containing 47	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-9878977-4	chr3	9878885	9879085	+	972.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45306.0	NM_001195031	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	4.34925358712777	3.31633014567047	3.30502107903693	3.98056512266139	3.8197501972	3.09863454356947	2.85330598354235	3.48992673567956	-0.669094494872457	0.234758363200954	0.731086761108682
Merged-chr5-120457697-1	chr5	120457597	120457797	+	630.0	f0_c57.idr	TTS (NM_133902)	TTS (NM_133902)	15066.0	NM_133902	257635.0	Mm.5162	NM_133902	ENSMUSG00000029596	Sdsl	4432411H13Rik|AI504310|SDH1|SDS-RS1|TDH	serine dehydratase-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-59879608-1	chr4	59879508	59879708	+	715.5	f0_balb.idr	intron (NM_172468, intron 4 of 8)	intron (NM_172468, intron 4 of 8)	35448.0	NM_021053	30936.0	Mm.284433	NM_021053	ENSMUSG00000028386	Slc46a2	5430429N04Rik|Ly110|TSO-1C12|Tscot	solute carrier family 46, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-119296931-3	chr2	119296809	119297009	+	809.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172269, exon 5 of 5)	exon (NM_172269, exon 5 of 5)	8167.0	NM_172269	228545.0	Mm.294761	NM_172269	ENSMUSG00000034216	Vps18	9930024E13Rik	VPS18 CORVET/HOPS core subunit	protein-coding	0.863874106560023	2.08852606160945	0.18103766538186	0.16830094832013	0.149579022475523	0.20048095599319	0.184606113021686	0.639517250561306	-3.35355907201652	0.0719037092533516	0.404012193391374
Merged-chr19-43571182-4	chr19	43571102	43571302	+	997.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41123.0	NM_008699	18089.0	Mm.56994	NM_008699	ENSMUSG00000044220	Nkx2-3	Nkx-2.3|Nkx2.3|tinman	NK2 homeobox 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153535997-1	chr2	153535897	153536097	+	578.0	f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-6026.0	NM_001134300	329540.0	Mm.50600	NM_001001986	ENSMUSG00000061411	Nol4l	4931410H15|8430427H17Rik|AI429157|Gm1636	nucleolar protein 4-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-3011089-2	chr3	3010928	3011128	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-497002.0	NM_013920	30942.0	Mm.330897	NM_013920	ENSMUSG00000017688	Hnf4g	NR2A2	hepatocyte nuclear factor 4, gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-128888944-4	chr6	128888842	128889042	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289706, intron 2 of 6)	intron (NM_001289706, intron 2 of 6)	1355.0	NM_001289707	93675.0	Mm.391513	NM_020257	ENSMUSG00000030365	Clec2i	Clr-g|Clrg|Dcl1|LCL-1|OCILrP2	C-type lectin domain family 2, member i	protein-coding	5.97564295738319	6.7569191462422	6.4352916550472	6.67855021931693	6.57754531653191	6.98059437798187	6.6097401976157	7.32280677414624	0.446463740771865	0.0518553038284897	0.333299965357618
Merged-chr9-101073824-4	chr9	101073748	101073948	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001100451)	promoter-TSS (NM_001100451)	-914.0	NM_001100451	77853.0	Mm.326206	NM_001100451	ENSMUSG00000066415	Msl2	E130103E02Rik|Msl2l1|Rnf184	MSL complex subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-114131181-4	chr5	114131098	114131298	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011677)	promoter-TSS (NM_011677)	42.0	NM_011677	22256.0	Mm.1393	NM_011677	ENSMUSG00000029591	Ung	UNG1|UNG2	uracil DNA glycosylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-81432925-4	chr17	81432829	81433029	+	971.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 5 of 8)	intron (NR_104580, intron 5 of 8)	305458.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-25010558-4	chr5	25010450	25010650	+	988.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145401, intron 3 of 15)	intron (NM_145401, intron 3 of 15)	-14797.0	NM_001310480	108099.0	Mm.33649	NM_145401	ENSMUSG00000028944	Prkag2	2410051C13Rik|AAKG|AAKG2|AI854673|H91620p|WPWS	protein kinase, AMP-activated, gamma 2 non-catalytic subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-60727355-2	chr14	60727255	60727455	+	695.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033272, intron 4 of 12)	intron (NM_001033272, intron 4 of 12)	-5549.0	NM_001310594	219140.0	Mm.149776	NM_001033272	ENSMUSG00000021990	Spata13	C79050|ESTM11|X83327|mFLJ00298	spermatogenesis associated 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4678316-4	chr16	4678227	4678427	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030205, intron 1 of 27)	intron (NM_030205, intron 1 of 27)	1393.0	NM_030205	78885.0	Mm.325512	NM_030205	ENSMUSG00000039637	Coro7	0610011B16Rik|AW048373|AW556392	coronin 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-43827134-1	chr1	43827034	43827234	+	561.0	f0_balb.idr	intron (NM_026430, intron 1 of 14)	intron (NM_026430, intron 1 of 14)	574.0	NM_026430	67883.0	Mm.387202	NM_026430	ENSMUSG00000057363	Uxs1	1600025I13Rik|AI451869|AI649125|AW550562	UDP-glucuronate decarboxylase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-66177975-2	chr14	66177875	66178075	+	960.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 8 of 30)	intron (NM_001162366, intron 8 of 30)	35849.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-105928335-4	chr3	105928204	105928404	+	766.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033780, intron 2 of 5)	intron (NM_001033780, intron 2 of 5)	4360.0	NM_001033780	433638.0	Mm.239081	NM_001033780	ENSMUSG00000074342	I830077J02Rik	-	RIKEN cDNA I830077J02 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-98844090-3	chr3	98843973	98844173	+	820.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15721.0	NM_001304800	15492.0	Mm.140811	NM_008293	ENSMUSG00000027871	Hsd3b1	3-beta-HSD I|D3Ertd383e	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84969553-4	chr8	84969462	84969662	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011563)	promoter-TSS (NM_011563)	-60.0	NM_001317385	21672.0	Mm.347009	NM_011563	ENSMUSG00000005161	Prdx2	AL022839|Band-8|NkefB|PRP|PrxII|TDX1|TPx|TPx-B|TR|TSA|Tdpx1|Torin	peroxiredoxin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-127268222-4	chr6	127268093	127268293	+	697.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39774.0	NR_073373	232386.0	Mm.257367	NR_073373	ENSMUSG00000107153	Gm38404	D130058E03	predicted gene, 38404	ncRNA	-2.05752322593321	-2.15521190974092	-2.16307242109104	-2.16952927915413	-2.17938029103484	-2.15350850414045	-2.16129297361887	-2.16837350464794	-0.683654500252594	0.846597994014493	1
Merged-chr7-119896029-7	chr7	119895928	119896128	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173408)	promoter-TSS (NM_173408)	167.0	NM_001285960	73919.0	Mm.46381	NM_029610	ENSMUSG00000030922	Lyrm1	1110065L10Rik|2310004B22Rik|4930404J24Rik	LYR motif containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45340813-4	chr7	45340707	45340907	+	929.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029741, intron 27 of 29)	intron (NM_029741, intron 27 of 29)	5538.0	NM_010473	15464.0	Mm.39968	NM_010473	ENSMUSG00000038239	Hrc	-	histidine rich calcium binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-75148880-1	chr5	75148780	75148980	+	610.0	f1_c57bl6.idr	Intergenic	Intergenic	-3371.0	NR_144636	18595.0	Mm.221403	NM_011058	ENSMUSG00000029231	Pdgfra	AI115593|CD140a|Pdgfr-2	platelet derived growth factor receptor, alpha polypeptide	protein-coding	2.98054577254934	2.16831534707576	1.1677814699804	1.75380253801881	1.93521110781881	1.6997715174935	1.43281967717307	2.25918200427071	-0.824660871829109	0.431415532576714	0.904679012727573
Merged-chr13-119835752-4	chr13	119835657	119835857	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5540.0	NM_001001449	380878.0	Mm.327311	NM_001001449	ENSMUSG00000094237	AF067063	-	cDNA sequence AF067063	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-84879876-4	chr11	84879819	84880019	+	892.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025414)	promoter-TSS (NM_025414)	276.0	NM_027388	70325.0	Mm.390414	NM_027388	ENSMUSG00000045140	Pigw	2610044A17Rik|Gwt1	phosphatidylinositol glycan anchor biosynthesis, class W	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-4680831-2	chr8	4680731	4680931	+	683.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	67661.0	NM_145591	233987.0	Mm.102799	NM_145591	ENSMUSG00000058748	Zfp958	-	zinc finger protein 958	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-49170941-2	chr13	49170841	49171041	+	788.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16606.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124506181-2	chr6	124506081	124506281	+	578.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_181344, intron 3 of 5)	(TG)n|Simple_repeat|Simple_repeat	-6440.0	NM_023143	50909.0	Mm.333375	NM_023143	ENSMUSG00000055172	C1ra	AI132558|C1r|mC1rA	complement component 1, r subcomponent A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59051272-4	chr15	59051180	59051380	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144800, intron 3 of 14)	L1M2|LINE|L1	30746.0	NM_001146180	211401.0	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-57030850-3	chr17	57030731	57030931	+	717.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010613, intron 1 of 17)	intron (NM_010613, intron 1 of 17)	676.0	NM_010613	16549.0	Mm.34296	NM_010613	ENSMUSG00000007670	Khsrp	6330409F21Rik|Fbp2|Fubp2|Ksrp	KH-type splicing regulatory protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99711384-1	chr7	99711284	99711484	+	641.0	f0_balb.idr	promoter-TSS (NM_175316)	promoter-TSS (NM_175316)	-44.0	NM_175316	101488.0	Mm.11249	NM_175316	ENSMUSG00000030737	Slco2b1	AI060904|AI852653|OATP-B|Slc21a9	solute carrier organic anion transporter family, member 2b1	protein-coding	-1.0109647023573	-0.992339833358801	-1.00440344130496	-0.36443856586117	-0.860000135324876	-0.989725599192326	-1.00167250489271	-1.00692726115489	-1.9586543039366	0.532077442485856	1
Merged-chr1-171112014-3	chr1	171111946	171112146	+	876.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9615.0	NM_001081275	75472.0	Mm.32760	NM_029301	ENSMUSG00000026649	Cfap126	1700009P17Rik|AV282292|Flattop|Fltp	cilia and flagella associated protein 126	protein-coding	2.97390576932054	2.29966316527744	1.80813566301527	3.1318611269524	2.84673476417204	2.31694158059799	3.56959624015554	2.80878701115882	0.551627549426131	0.472029638445085	0.926125823511231
Merged-chr15-78594417-2	chr15	78594304	78594504	+	818.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2643.0	NM_028195	72318.0	Mm.32911	NM_028195	ENSMUSG00000018008	Cyth4	2510004M07Rik|5830469K17Rik|AI467541|Pscd4|mFLJ00017	cytohesin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-9231624-4	chr13	9231533	9231733	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-44892.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-46521024-1	chr2	46520924	46521124	+	568.0	f0_balb.idr	Intergenic	Intergenic	824419.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-37877355-2	chr18	37877232	37877432	+	614.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007858, intron 16 of 26)	intron (NM_007858, intron 16 of 26)	-22672.0	NR_105945	102465592.0		NR_105945	ENSMUSG00000098706	Mir6979	Gm27524|mmu-mir-6979	microRNA 6979	ncRNA	-0.230477104048448	-0.218334372611923	-0.222332838356274	0.172574742937854	0.304465709178025	-0.0330549028278265	-0.221452649440129	-0.0697132966786871	1.13810722939201	0.621539479415237	1
Merged-chr18-56470979-4	chr18	56470855	56471055	+	908.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360917, intron 2 of 13)	intron (NM_001360917, intron 2 of 13)	38823.0	NM_026240	107022.0	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|Gramd2b|NS3TP2	GRAM domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-113995140-2	chr5	113995040	113995240	+	785.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1383.0	NM_198109	231637.0	Mm.389682	NM_198109	ENSMUSG00000042121	Ssh1	AW551225|Gm1394|Gm1395|SSH-1|SSH-1L	slingshot protein phosphatase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-116108892-3	chr9	116108764	116108964	+	801.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029575, intron 4 of 6)	L1MA5|LINE|L1	66499.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67966357-4	chr10	67966250	67966450	+	921.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152797, intron 2 of 2)	intron (NR_152797, intron 2 of 2)	7358.0	NR_152797	75067.0	Mm.416933	NR_152797	ENSMUSG00000112899	4930521O17Rik	-	RIKEN cDNA 4930521O17 gene	ncRNA	4.63169913592541	4.45344501676571	5.09176921754533	4.52328407452209	3.4331990177737	2.25272283088785	3.34449221628761	4.41427789343526	-1.47500460900999	0.00385828689906317	0.0546322496636034
Merged-chr7-67239515-1	chr7	67239415	67239615	+	552.0	f1_c57bl6.idr	intron (NM_001357324, intron 10 of 11)	intron (NM_001357324, intron 10 of 11)	16899.0	NM_001191051	75099.0	Mm.121691	NM_175215	ENSMUSG00000043831	Lysmd4	4930506D23Rik	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106737426-2	chr11	106737326	106737526	+	708.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13800.0	NM_001271375	380732.0	Mm.343952	NM_001033435	ENSMUSG00000040528	Milr1	Allergin-1|Gm885|Mca32	mast cell immunoglobulin like receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-109894986-3	chr9	109894901	109895101	+	692.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5358.0	NR_106057	102465660.0		NR_106057	ENSMUSG00000098490	Mir7089	Gm27418|mmu-mir-7089	microRNA 7089	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-77531578-2	chr12	77531478	77531678	+	852.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	121437.0	NM_001252616	53618.0	Mm.35628	NM_016893	ENSMUSG00000021065	Fut8	-	fucosyltransferase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-105426827-2	chr14	105426727	105426927	+	782.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045859)	promoter-TSS (NR_045859)	-732.0	NR_045859	71362.0	Mm.410781	NR_045859	ENSMUSG00000115548	5430440P10Rik	-	RIKEN cDNA 5430440P10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-69060269-4	chr3	69060174	69060374	+	908.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15532.0	NM_025863	66949.0	Mm.176695	NM_025863	ENSMUSG00000034317	Trim59	2310035M22Rik|2700022F13Rik|Mrf1|TSBF1	tripartite motif-containing 59	protein-coding	1.34629819763052	1.45860899081359	0.612289259437283	0.602424256911216	0.58823226273765	1.47283881932431	1.29218976407315	0.604157949326121	-0.057052104859383	0.972380142670746	0.998431161219273
Merged-chr12-3307581-3	chr12	3307492	3307692	+	699.266663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016676, intron 1 of 5)	intron (NM_016676, intron 1 of 5)	2377.0	NM_016676	19325.0	Mm.378993	NM_016676	ENSMUSG00000020671	Rab10	AW107754	RAB10, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-64986335-2	chr1	64986235	64986435	+	772.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29511.0	NM_001039493	241075.0	Mm.239534	NM_175509	ENSMUSG00000051344	Plekhm3	9430067K14Rik|A230102O09Rik|AI449570|DAPR|Plekhm1l	pleckstrin homology domain containing, family M, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-63616964-4	chr15	63616858	63617058	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-137350.0	NR_045279	432958.0	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-178344300-2	chr1	178344200	178344400	+	582.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur3|SINE|Alu	-6485.0	NR_149827	51810.0	Mm.86589	NM_016805	ENSMUSG00000039630	Hnrnpu	AA408410|AI256620|AL024194|AL024437|AW557595|C86794|Hnrpu|SAFA|Sp120|hnRNP U	heterogeneous nuclear ribonucleoprotein U	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-59020997-4	chr19	59020873	59021073	+	888.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114312, intron 9 of 16)	intron (NM_001114312, intron 9 of 16)	55096.0	NM_175172	71653.0	Mm.37338	NM_175172	ENSMUSG00000041362	Shtn1	4930506M07Rik|Shootin1|mKIAA1598	shootin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-55395870-4	chr9	55395764	55395964	+	961.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172923, intron 3 of 10)	intron (NM_172923, intron 3 of 10)	68951.0	NM_001357568	244886.0	Mm.24361	NM_172923	ENSMUSG00000032313	Tmem266	9630029F15|AI118078|HVRP1	transmembrane protein 266	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-103233189-4	chr9	103233088	103233288	+	772.883301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2902.0	NM_133977	22041.0	Mm.37214	NM_133977	ENSMUSG00000032554	Trf	AI266983|Cd176|HP|Tf|Tfn|hpx	transferrin	protein-coding	1.52221132106479	1.23497319724808	1.66973748037418	1.4148913249555	1.23931616701854	1.24403752724337	0.832411449723874	0.821346279342202	-1.81597167060142	0.176051814030219	0.645786463389933
Merged-chr16-96128893-1	chr16	96128793	96128993	+	556.0	f1_c57bl6.idr	Intergenic	RLTR14_RN|LTR|ERV1	-1168.0	NM_008251	15312.0	Mm.2756	NM_008251	ENSMUSG00000040681	Hmgn1	HMG-14|Hmg14	high mobility group nucleosomal binding domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-21211053-1	chr16	21210953	21211153	+	622.0	f0_balb.idr	intron (NM_010143, intron 1 of 15)	intron (NM_010143, intron 1 of 15)	6258.0	NM_010143	13845.0	Mm.6972	NM_010143	ENSMUSG00000005958	Ephb3	AW456895|Cek10|Etk2|HEK2|MDK5|Sek4|Tyro6	Eph receptor B3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-52955515-4	chr6	52955417	52955617	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173406, intron 1 of 4)	intron (NM_173406, intron 1 of 4)	-45897.0	NM_001168277	231986.0	Mm.386865	NM_173406	ENSMUSG00000063568	Jazf1	AI591476|C820002C15|Jaz1|Tip27	JAZF zinc finger 1	protein-coding	1.48894880739251	2.17690610884142	2.42473695625578	1.23087858161423	1.18653043251896	1.30757203650411	1.63071526980361	1.57889617135264	-1.49656403121002	0.177329741003246	0.647212198100876
Merged-chr15-57693960-4	chr15	57693893	57694093	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199449)	promoter-TSS (NM_199449)	-674.0	NM_199449	387609.0	Mm.36557	NM_199449	ENSMUSG00000071757	Zhx2	Afr-1|Afr1|Raf|mKIAA0854	zinc fingers and homeoboxes 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-84229596-2	chr3	84229496	84229696	+	609.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271726, intron 1 of 11)	Tigger7|DNA|TcMar-Tigger	-8719.0	NM_030706	80890.0	Mm.44876	NM_030706	ENSMUSG00000027993	Trim2	mKIAA0517|narf	tripartite motif-containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122139986-1	chr8	122139886	122140086	+	595.0	f0_balb.idr	Intergenic	Intergenic	-142155.0	NM_009569	22761.0	Mm.3105	NM_009569	ENSMUSG00000049577	Zfpm1	FOG|Fog1	zinc finger protein, multitype 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139460621-4	chr5	139460519	139460719	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028469)	promoter-TSS (NM_028469)	-85.0	NM_028469	73212.0	Mm.84294	NM_028469	ENSMUSG00000053553	3110082I17Rik	AW411904	RIKEN cDNA 3110082I17 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-105716765-3	chr2	105716677	105716877	+	842.1889039999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023876, intron 9 of 9)	intron (NM_023876, intron 9 of 9)	34314.0	NM_001310145	18508.0	Mm.3608	NM_013627	ENSMUSG00000027168	Pax6	1500038E17Rik|AEY11|Dey|Gsfaey11|Pax-6|Sey	paired box 6	protein-coding	-0.154878844754563	-0.276730745184922	-0.280628681768142	-0.283623602302378	0.165070676104765	0.198063000126477	-0.109892791753248	-0.283101178391326	2.74300429962678	0.236281959421148	1
Merged-chr13-73733467-2	chr13	73733367	73733567	+	607.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30193.0	NM_001360694	20499.0	Mm.275800	NM_011390	ENSMUSG00000017756	Slc12a7	AA408796|D13Ertd261e|Kcc4	solute carrier family 12, member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-8736591-1	chr5	8736491	8736691	+	744.0	f0_balb.idr	intron (NM_011076, intron 25 of 29)	intron (NM_011076, intron 25 of 29)	-61556.0	NM_011075	18669.0	Mm.146649	NM_011075	ENSMUSG00000028970	Abcb1b	Abcb1|Mdr1|Mdr1b|Pgy-1|Pgy1|mdr	ATP-binding cassette, sub-family B (MDR/TAP), member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-12327359-3	chr2	12327263	12327463	+	914.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25419.0	NM_001001309	241226.0	Mm.329997	NM_001001309	ENSMUSG00000026768	Itga8	AI447669	integrin alpha 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-79641372-2	chr8	79641272	79641472	+	838.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081164, intron 1 of 20)	intron (NM_001081164, intron 1 of 20)	1696.0	NM_001081164	73945.0	Mm.34348	NM_001081164	ENSMUSG00000036990	Otud4	4930431L18Rik|AI449692|D8Ertd69e|mKIAA1046	OTU domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135463077-2	chr5	135462977	135463177	+	668.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_146001, intron 1 of 30)	intron (NM_146001, intron 1 of 30)	-68531.0	NM_148932	107939.0	Mm.28399	NM_148932	ENSMUSG00000053293	Pom121	2610027A18Rik|C80273|mKIAA0618	nuclear pore membrane protein 121	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-94250270-4	chr16	94250203	94250403	+	901.90625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360045, intron 5 of 10)	intron (NM_001360045, intron 5 of 10)	39988.0	NM_001360045	110948.0	Mm.30921	NM_139145	ENSMUSG00000040820	Hlcs	410I21.SP6|D16Jhu34	holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-99180995-2	chr9	99180895	99181095	+	974.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-40784.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-144897404-4	chr3	144897312	144897512	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-1401.0	NR_126537	622139.0	Mm.447150	NM_001039222	ENSMUSG00000074196	Clca4c-ps	Clca4c|EG622139|Gm18718|Gm6289	chloride channel accessory 4C, pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-38187381-2	chr18	38187281	38187481	+	681.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22381.0	NM_029357	75599.0	Mm.36560	NM_029357	ENSMUSG00000051375	Pcdh1	2010005A06Rik|AI585920	protocadherin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-118645386-2	chr5	118645291	118645491	+	927.3333130000001	f0_c57.idr|f1_c57bl6.idr	intron (NM_001347445, intron 2 of 30)	intron (NM_001347445, intron 2 of 30)	84672.0	NM_172424	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	3.62688422767664	4.14590210063551	3.2976004356914	3.81601214320203	2.00200178781548	1.49545318871107	1.74180798875381	2.12772004705596	-3.53683002134095	4.21590693913367e-06	0.00022120605592883
Merged-chr4-95967267-2	chr4	95967167	95967367	+	943.400024	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030014)	promoter-TSS (NM_030014)	-112.0	NM_030014	77963.0	Mm.49994	NM_030014	ENSMUSG00000028572	Hook1	A930033L17Rik|azh	hook microtubule tethering protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-113549608-2	chr13	113549508	113549708	+	610.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-46764.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-112226799-3	chr7	112226656	112226856	+	669.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001193305, intron 1 of 25)	intron (NM_001193305, intron 1 of 25)	920.0	NM_001193305	320878.0	Mm.52312	NM_177282	ENSMUSG00000038244	Mical2	5330438E18Rik|9530064J02|MICAL-2|mKIAA0750	microtubule associated monooxygenase, calponin and LIM domain containing 2	protein-coding	-0.705462284659533	-0.692039350728304	-0.696404991786595	-0.699794298686259	-0.704615813229747	-0.691059478468343	0.249785153490666	-0.509709854686903	3.55683670059223	0.193595166081471	1
Merged-chr13-55895748-4	chr13	55895690	55895890	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64365.0	NM_011097	18740.0	Mm.135195	NM_011097	ENSMUSG00000021506	Pitx1	Bft|P-OTX|Potx|Ptx1	paired-like homeodomain transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-67424128-3	chr15	67424028	67424228	+	936.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	197359.0	NR_045140	69334.0	Mm.63770	NR_045140	ENSMUSG00000102069	1700012I11Rik	-	RIKEN cDNA 1700012I11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-29401269-2	chr17	29401169	29401369	+	766.625	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40355.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111365072-2	chr12	111364972	111365172	+	861.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_183016, intron 1 of 36)	L1MB8|LINE|L1	12646.0	NM_183016	217866.0	Mm.27397	NM_183016	ENSMUSG00000021279	Cdc42bpb	MRCKb	CDC42 binding protein kinase beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-102759492-6	chr4	102759323	102759523	+	878.133301	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285852)	promoter-TSS (NM_001285852)	-712.0	NM_001285860	73094.0	Mm.54201	NM_144906	ENSMUSG00000028524	Sgip1	3110007P09Rik|SGIP1alpha|gag	SH3-domain GRB2-like (endophilin) interacting protein 1	protein-coding	1.17541110097641	0.886110312032219	1.68166360285314	1.3848127231725	1.73305087510314	0.889838998551458	2.07350869091877	1.06921006009714	0.762948989957591	0.55815444661988	0.960321604678676
Merged-chr11-97799607-4	chr11	97799500	97799700	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010688)	promoter-TSS (NM_010688)	35.0	NM_010688	16796.0	Mm.271967	NM_010688	ENSMUSG00000038366	Lasp1	AA408629|Def-4|LASP-1|MLN 50|SH3P6|Tg(Col1a1-lacZ)1Ngma	LIM and SH3 protein 1	protein-coding	5.04695541045735	5.02164664653152	5.09600754918378	4.47554499028735	5.135820864536	4.49751422007616	5.09551990254144	4.68386642984873	-0.0536078290931832	0.875149173626037	0.998431161219273
Merged-chr7-128013298-2	chr7	128013198	128013398	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8920.0	NM_001079932	434246.0	Mm.389924	NM_001079932	ENSMUSG00000042828	Trim72	BC067209|MG53	tripartite motif-containing 72	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-41408559-4	chr3	41408468	41408668	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	84631.0	NR_040385	78706.0	Mm.366094	NR_040385	ENSMUSG00000097639	Platr4	C430002E04Rik	pluripotency associated transcript 4	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-73040203-4	chr2	73040087	73040287	+	976.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59741.0	NM_001018042	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-76889699-4	chr11	76889604	76889804	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR35B_MM|LTR|ERVL	-14841.0	NM_025655	66601.0	Mm.25138	NM_025655	ENSMUSG00000020839	Tmigd1	2010002A20Rik|Tmigd	transmembrane and immunoglobulin domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-12053484-4	chr2	12053394	12053594	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-247752.0	NR_040353	338535.0	Mm.483275	NR_040353	ENSMUSG00000086843	E030013I19Rik	-	RIKEN cDNA E030013I19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-91799167-2	chr12	91799067	91799267	+	716.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12731.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-129429591-4	chr3	129429475	129429675	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4098.0	NR_033594	435755.0	Mm.430561	NR_033594	ENSMUSG00000105712	Pou5f1-rs4	EG435755|Gm5712|Oct4P1|Otf3-rs4|Otf3d	POU domain, class 5, transcription factor 1, related sequence 4	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-12213831-3	chr15	12213708	12213908	+	702.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356498, intron 1 of 15)	intron (NM_001356498, intron 1 of 15)	8780.0	NM_172958	268783.0	Mm.54460	NM_172958	ENSMUSG00000039458	Mtmr12	3Pap|4932703C11|C730015A02Rik|Pip3ap|mKIAA1682	myotubularin related protein 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-31417163-4	chr3	31417081	31417281	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-106862.0	NM_172861	241919.0	Mm.285366	NM_172861	ENSMUSG00000069072	Slc7a14	A930013N06|BC061928	solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-15862912-1	chr16	15862812	15863012	+	995.3333130000001	f0_balb.idr	exon (NM_029354, exon 1 of 3)	exon (NM_029354, exon 1 of 3)	457.0	NM_029354	72083.0	Mm.22351	NM_029354	ENSMUSG00000022671	Mzt2	2410018G20Rik|2610001E06Rik|Fam128|Fam128b	mitotic spindle organizing protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-30940135-2	chr16	30940035	30940235	+	865.1999509999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	141297.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94357684-3	chr10	94357541	94357741	+	850.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 1 of 4)	intron (NM_001359762, intron 1 of 4)	45692.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-61654068-2	chr11	61653968	61654168	+	732.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027817, intron 1 of 4)	intron (NM_027817, intron 1 of 4)	747.0	NM_027817	71520.0	Mm.202760	NM_027817	ENSMUSG00000004837	Grap	8430435N19Rik|BB233594	GRB2-related adaptor protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-52022414-2	chr14	52022314	52022514	+	740.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1681.0	NM_027248	69890.0	Mm.475652	NM_027248	ENSMUSG00000049295	Zfp219	2010302A17Rik|Znf219	zinc finger protein 219	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-12378389-1	chr2	12378289	12378489	+	543.0	f1_balb.idr	intron (NR_149731, intron 1 of 5)	(CA)n|Simple_repeat|Simple_repeat	41071.0	NM_001355537	66960.0	Mm.34059	NM_024185	ENSMUSG00000026767	Mindy3	1810041E18Rik|2310047O13Rik|5830410F13Rik|AI447827|AW111958|Fam188a	MINDY lysine 48 deubiquitinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-92722609-3	chr13	92722514	92722714	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	72204.0	NM_011582	21828.0	Mm.20865	NM_011582	ENSMUSG00000021702	Thbs4	TSP4	thrombospondin 4	protein-coding	4.7843696569822	4.3537603114585	4.06004266549176	4.24128382950704	1.71275241166285	2.00416399147418	3.02569380952488	2.4810097019739	-3.09523293936922	3.9576987240707e-07	2.9801968174519e-05
Merged-chr9-63031577-4	chr9	63031478	63031678	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50699.0	NM_019663	56469.0	Mm.431253	NM_019663	ENSMUSG00000032405	Pias1	2900068C24Rik|Ddxbp1|GBP	protein inhibitor of activated STAT 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-59061388-4	chr12	59061268	59061468	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_030057, exon 1 of 6)	5' UTR (NM_030057, exon 1 of 6)	104.0	NM_001306218	78232.0	Mm.290070	NM_030057	ENSMUSG00000020993	Trappc6b	5830498C14Rik|C79212	trafficking protein particle complex 6B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152530986-2	chr1	152530886	152531086	+	658.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 14 of 17)	intron (NM_016846, intron 14 of 17)	94231.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-57513274-2	chr8	57513174	57513374	+	762.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008252, intron 3 of 4)	intron (NM_008252, intron 3 of 4)	1431.0	NM_008252	97165.0	Mm.276881	NM_008252	ENSMUSG00000054717	Hmgb2	C80539|HMG-2|Hmg2	high mobility group box 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-13543794-4	chr2	13543694	13543894	+	980.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010067, intron 1 of 10)	intron (NM_010067, intron 1 of 10)	870.0	NM_010067	13434.0	Mm.6979	NM_010067	ENSMUSG00000026723	Trdmt1	Dnmt2|Rnmt2	tRNA aspartic acid methyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-74702098-2	chr1	74701998	74702198	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11437.0	NM_024264	104086.0	Mm.85083	NM_024264	ENSMUSG00000026170	Cyp27a1	1300013A03Rik|Cyp27	cytochrome P450, family 27, subfamily a, polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-5255058-3	chr6	5254973	5255173	+	585.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173006, intron 1 of 8)	intron (NM_173006, intron 1 of 8)	1160.0	NM_173006	269823.0	Mm.9122	NM_173006	ENSMUSG00000029759	Pon3	2810004E20|AI786302	paraoxonase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-18567534-2	chr15	18567434	18567634	+	570.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5b|LINE|L1	-197907.0	NR_045711	70886.0	Mm.399021	NR_045711	ENSMUSG00000098150	4921515E04Rik	-	RIKEN cDNA 4921515E04 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88082867-4	chr3	88082777	88082977	+	971.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033484, intron 1 of 37)	intron (NM_001033484, intron 1 of 37)	826.0	NM_001033484	404710.0	Mm.331133	NM_001033484	ENSMUSG00000028068	Iqgap3	AI593484|D030034H08	IQ motif containing GTPase activating protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127122019-3	chr7	127121883	127122083	+	930.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133686)	promoter-TSS (NM_133686)	46.0	NM_133686	67375.0	Mm.26928	NM_133686	ENSMUSG00000030674	Qprt	2410027J01Rik|AI647766|QPRTase	quinolinate phosphoribosyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-34778438-4	chr11	34778336	34778536	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033374, intron 1 of 51)	intron (NM_033374, intron 1 of 51)	5469.0	NM_033374	94176.0	Mm.380679	NM_033374	ENSMUSG00000020143	Dock2	AI662014|AW122239|CED-5|Hch|MBC	dedicator of cyto-kinesis 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-16442350-2	chr5	16442250	16442450	+	576.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-111145.0	NM_001289460	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-86472402-4	chr6	86472320	86472520	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_131125, exon 5 of 5)	non-coding (NR_131125, exon 5 of 5)	8410.0	NR_131125	320486.0	Mm.391625	NR_131125	ENSMUSG00000085589	A430078I02Rik	T25621	RIKEN cDNA A430078I02 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41360698-2	chr19	41360598	41360798	+	956.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 2 of 16)	RMER1B|Other|Other	24372.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	-0.717541876889383	-1.05685541724125	-1.06767587827142	-1.07341739815514	-1.07595272729156	-1.05451057819739	-0.897272344010799	-0.913295758340994	-0.224491936261253	0.941533984211983	1
Merged-chr1-152527499-2	chr1	152527399	152527599	+	824.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 15 of 17)	intron (NM_016846, intron 15 of 17)	97718.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-97270494-1	chr7	97270394	97270594	+	770.0	f0_balb.idr	intron (NM_001162477, intron 2 of 9)	intron (NM_001162477, intron 2 of 9)	55470.0	NM_001177412	244144.0	Mm.297541	NM_001177412	ENSMUSG00000035713	Usp35	Gm1088|Gm493	ubiquitin specific peptidase 35	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-95302536-1	chr8	95302436	95302636	+	718.0	f1_balb.idr	intron (NM_145601, intron 2 of 12)	B3A|SINE|B2	4049.0	NM_145601	333329.0	Mm.484049	NM_145601	ENSMUSG00000031789	Cngb1	Cngb1b|Garp2|Gm1959	cyclic nucleotide gated channel beta 1	protein-coding	3.10083032303896	1.60570773907084	3.5214882795185	2.90805031282741	3.33911410059722	3.73975545393036	1.55689355454318	4.07752655781964	0.805908197626396	0.541948035525033	0.954866069207078
Merged-chr11-17528053-3	chr11	17527953	17528153	+	955.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14|LTR|ERV1	270365.0	NM_001330649	57316.0	Mm.287982	NM_020558	ENSMUSG00000000581	C1d	1110036E10Rik|AI875855|SUN-CoR	C1D nuclear receptor co-repressor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-120285301-4	chr14	120285197	120285397	+	901.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360380, intron 1 of 7)	intron (NM_001360380, intron 1 of 7)	9628.0	NM_001360380	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	0.194838065031585	0.260672714789534	0.0659442308132338	0.765842946864283	0.0558324786498789	0.26547770720528	0.0671430990143722	0.484445124967251	-0.907924008120989	0.645968936201348	1
Merged-chr16-20621071-2	chr16	20620971	20621171	+	864.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_028420, exon 1 of 2)	exon (NM_028420, exon 1 of 2)	207.0	NM_028420	73047.0	Mm.425977	NM_028420	ENSMUSG00000051146	Camk2n2	2900075A18Rik	calcium/calmodulin-dependent protein kinase II inhibitor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-17257108-3	chr12	17256968	17257168	+	788.133362	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9527.0	NM_027959	71853.0	Mm.222825	NM_027959	ENSMUSG00000020571	Pdia6	1700015E05Rik|AL023058|C77895|CaBP5|P5|Txndc7	protein disulfide isomerase associated 6	protein-coding	3.32994206594694	4.11694209376003	3.16234910929164	3.93736986691442	4.00811800693254	2.91755040224625	2.95163913120834	2.85558795891767	-0.600257219805289	0.314513978908218	0.816464538199166
Merged-chr15-82151448-2	chr15	82151376	82151576	+	884.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_033218, intron 1 of 18)	intron (NM_033218, intron 1 of 18)	4207.0	NM_033218	20788.0	Mm.38016	NM_033218	ENSMUSG00000022463	Srebf2	AI608257|SREBP-2|SREBP2|SREBP2gc|bHLHd2|lop13|nuc	sterol regulatory element binding factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-104465266-4	chr7	104465183	104465383	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009099)	promoter-TSS (NM_009099)	-90.0	NM_009099	20128.0	Mm.295578	NM_009099	ENSMUSG00000030921	Trim30a	Rpt-1|Rpt1|Trim30	tripartite motif-containing 30A	protein-coding	5.60377679799675	5.97630772544214	5.57929966319474	5.93141832683354	6.16774734832748	6.7346828536302	6.14486488758829	5.81166009296833	0.514823453203613	0.0439267376615679	0.3010470288253
Merged-chr5-102778028-3	chr5	102777936	102778136	+	821.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286468, intron 1 of 7)	intron (NM_001286468, intron 1 of 7)	9226.0	NM_001286468	231532.0	Mm.440191	NM_029270	ENSMUSG00000057315	Arhgap24	0610025G21Rik	Rho GTPase activating protein 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129360870-3	chr2	129360805	129361005	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8997.0	NR_015474	329514.0	Mm.207315	NM_177848	ENSMUSG00000074805	Il1bos	9430083I22|Gm14047	interleukin 1 beta, opposite strand	ncRNA	3.12358081311227	4.13320755951423	2.81240889348499	3.94972654059271	3.54182760545839	4.47988671063419	2.04551009448735	4.35253156348222	0.389956586333208	0.548082009830322	0.95796208018571
Merged-chr8-121751654-2	chr8	121751554	121751754	+	551.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_020605, intron 1 of 4)	B3|SINE|B2	21095.0	NM_020605	57340.0	Mm.306870	NM_020605	ENSMUSG00000025318	Jph3	JP-3|Jp3	junctophilin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-16650064-2	chr10	16649964	16650164	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	445718.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-35317312-4	chr12	35317264	35317464	+	938.974976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-122467.0	NR_030449	751520.0		NR_030449	ENSMUSG00000076253	Mir680-3	Mirn680-3	microRNA 680-3	ncRNA	-0.209451203880334	-0.192499736585281	-0.198025875960554	0.25221648689917	-0.0502890061975452	-0.191257596941167	0.710984050657081	-0.20155828531527	1.54076681937191	0.51077058498831	1
Merged-chr13-78236768-4	chr13	78236603	78236803	+	972.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_045195)	TTS (NR_045195)	-37830.0	NM_010151	13865.0	Mm.439653	NM_010151	ENSMUSG00000069171	Nr2f1	COUP-TF1|COUP-TFI|COUPTFA|EAR-3|EAR3|Erbal3|SVP44|Tcfcoup1	nuclear receptor subfamily 2, group F, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-144204888-4	chr2	144204802	144205002	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15612.0	NR_136884	433481.0	Mm.330630	NR_136884	ENSMUSG00000074758	Gm5535	EG433481	predicted gene 5535	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-80949889-2	chr8	80949789	80949989	+	967.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	65017.0	NM_027554	74841.0	Mm.246018	NM_027554	ENSMUSG00000038250	Usp38	4631402N15Rik|4833420O05Rik|AA536967|AU044701|AW544820|mKIAA1891	ubiquitin specific peptidase 38	protein-coding	-1.22315906685268	-1.19557143632602	-1.20673282037136	-0.55836125556573	-1.22265483704505	-1.19315271784257	-1.20420612767407	-1.21425999345206	-2.67891099987134	0.437057736398543	1
Merged-chr1-86431144-2	chr1	86431044	86431244	+	974.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	4815.0	NM_027966	71863.0	Mm.179627	NM_027966	ENSMUSG00000036574	Tex44	1700019O17Rik	testis expressed 44	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-102266718-4	chr7	102266591	102266791	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1133.0	NM_009287	20866.0	Mm.645	NM_009287	ENSMUSG00000030987	Stim1	SIM	stromal interaction molecule 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-86496730-2	chr6	86496630	86496830	+	606.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-8503.0	NR_040292	381792.0	Mm.333223	NR_040292	ENSMUSG00000101655	2310040G24Rik	-	RIKEN cDNA 2310040G24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-101810814-3	chr2	101810732	101810932	+	846.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355625, intron 1 of 8)	intron (NM_001355625, intron 1 of 8)	-13125.0	NM_001083810	72446.0	Mm.24138	NM_175181	ENSMUSG00000032841	Prr5l	2600010E01Rik|4833411O04Rik|Protor-2|Protor2	proline rich 5 like	protein-coding	1.14332965395445	0.877601223391361	1.00714402021464	1.21590092344827	1.15432467124131	1.32383659033316	0.669082001104743	0.660778112177392	-0.353407768581104	0.809801081068226	0.998431161219273
Merged-chr1-97660979-6	chr1	97660884	97661084	+	990.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001355072, exon 1 of 3)	5' UTR (NM_001355072, exon 1 of 3)	692.0	NM_001355074	52392.0	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-122442144-2	chr9	122442044	122442244	+	665.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43343.0	NR_045967	654800.0	Mm.393956	NR_045967		A730085K08Rik	-	RIKEN cDNA A730085K08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-9667272-2	chr6	9667172	9667372	+	723.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	717253.0	NM_008751	18231.0	Mm.46954	NM_008751	ENSMUSG00000046178	Nxph1	C130005L03Rik	neurexophilin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124483414-4	chr5	124483304	124483504	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029532, intron 1 of 1)	CpG	249.0	NM_029532	76167.0	Mm.156035	NM_029532	ENSMUSG00000029402	Snrnp35	6330548G22Rik	small nuclear ribonucleoprotein 35 (U11/U12)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-27985614-2	chr3	27985514	27985714	+	825.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_008875, intron 1 of 25)	intron (NM_008875, intron 1 of 25)	1443.0	NM_008875	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-6411876-4	chr11	6411785	6411985	+	850.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3985.0	NM_008907	268373.0	Mm.5246	NM_008907	ENSMUSG00000071866	Ppia	2700098C05|Cphn|CyP-18|CypA	peptidylprolyl isomerase A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-69557720-6	chr5	69557618	69557818	+	815.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310631, intron 1 of 14)	intron (NM_001310631, intron 1 of 14)	794.0	NM_001310631	231279.0	Mm.21105	NM_172711	ENSMUSG00000029208	Guf1	4631409J12|AA407526|EF-4	GUF1 homolog, GTPase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85472947-1	chr12	85472847	85473047	+	912.0	f0_c57.idr	promoter-TSS (NM_010234)	promoter-TSS (NM_010234)	-943.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-93083434-4	chr10	93083337	93083537	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1841.0	NM_001347060	380654.0	Mm.34980	NM_001347060	ENSMUSG00000020014	Cfap54	4930485B16Rik|Gm872	cilia and flagella associated protein 54	protein-coding	2.98678920572098	3.25567510312472	3.14673586287468	3.57858956522303	2.49144351537574	2.27645642291702	3.34896586952722	3.71078341331704	-0.264987634923061	0.687469405700486	0.996533206832645
Merged-chr11-120733785-4	chr11	120733645	120733845	+	923.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER20C_Mm|LTR|ERVK	-1724.0	NM_007621	12409.0	Mm.21454	NM_007621	ENSMUSG00000025150	Cbr2	MLCR	carbonyl reductase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-95751187-2	chr11	95751087	95751287	+	944.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_201609, intron 1 of 4)	intron (NM_201609, intron 1 of 4)	2120.0	NM_201609	268469.0	Mm.389038	NM_201609	ENSMUSG00000075595	Zfp652	9530033F24Rik|ZNF652	zinc finger protein 652	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27840019-4	chr17	27839918	27840118	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011432)	promoter-TSS (NM_011432)	-69.0	NM_011432	20630.0	Mm.103949	NM_011432	ENSMUSG00000024217	Snrpc	Snrp1c|U1-C|U1C	U1 small nuclear ribonucleoprotein C	protein-coding	2.45072363361593	1.30116674604759	1.99646209799037	1.80834273976922	2.07599399876237	2.07871372300221	2.24796404344548	1.9520936653319	0.315279114991761	0.746175251832164	0.998431161219273
Merged-chr14-20765909-6	chr14	20765816	20766016	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001039138, exon 7 of 20)	exon (NM_001039138, exon 7 of 20)	28172.0	NM_001039138	12325.0	Mm.235182	NM_178597	ENSMUSG00000021820	Camk2g	Camkg	calcium/calmodulin-dependent protein kinase II gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-54807817-4	chr3	54807719	54807919	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133231)	promoter-TSS (NM_133231)	-28.0	NM_133231	170767.0	Mm.185735	NM_133231	ENSMUSG00000036615	Rfxap	5730495K23Rik	regulatory factor X-associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-103733966-2	chr3	103733866	103734066	+	899.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4035.0	NM_133859	99543.0	Mm.211535	NM_133859	ENSMUSG00000027848	Olfml3	2810002E22Rik|AI115209|AW550633|HNOEL-iso|ONT3|mONT3	olfactomedin-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-62972349-4	chr9	62972287	62972487	+	934.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019663, intron 1 of 13)	intron (NM_019663, intron 1 of 13)	8492.0	NM_019663	56469.0	Mm.431253	NM_019663	ENSMUSG00000032405	Pias1	2900068C24Rik|Ddxbp1|GBP	protein inhibitor of activated STAT 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26660469-2	chr17	26660369	26660569	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15927.0	NM_025272	11974.0	Mm.22602	NM_025272	ENSMUSG00000015575	Atp6v0e	Atp6k|Atp6v0e1|M9.2	ATPase, H+ transporting, lysosomal V0 subunit E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67283717-3	chr10	67283616	67283816	+	816.194458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001036293, intron 1 of 3)	intron (NM_001036293, intron 1 of 3)	1565.0	NM_001036293	641340.0	Mm.136223	NM_001036293	ENSMUSG00000075000	Nrbf2	NRBF-2	nuclear receptor binding factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-4624007-2	chr7	4623907	4624107	+	682.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	6475.0	NM_023440	68255.0	Mm.389784	NM_023440	ENSMUSG00000045282	Tmem86b	C330014O21Rik	transmembrane protein 86B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123015594-2	chr5	123015494	123015694	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175423, intron 1 of 1)	CpG	520.0	NM_175423	109305.0	Mm.218582	NM_175423	ENSMUSG00000049686	Orai1	D730049H07Rik|Tmem142a|orai-1	ORAI calcium release-activated calcium modulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19092857-2	chr7	19092757	19092957	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_032418, intron 14 of 14)	intron (NM_032418, intron 14 of 14)	-1687.0	NM_011383	20475.0	Mm.3410	NM_011383	ENSMUSG00000040841	Six5	Dmahp|MDMAHP|TrexBF	sine oculis-related homeobox 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-58184330-4	chr2	58184212	58184412	+	976.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20338.0	NR_045895	100042926.0	Mm.446515	NR_045895	ENSMUSG00000086862	Gm13546	-	predicted gene 13546	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-37262645-4	chr10	37262589	37262789	+	787.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-123763.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-29767232-4	chr7	29767178	29767378	+	968.116699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1274.0	NM_023750	74352.0	Mm.251083	NM_023750	ENSMUSG00000046185	Zfp84	2210410P13Rik|4633401C23Rik|AI415447|BB081605|C86188|KRAB18|Zfp69	zinc finger protein 84	protein-coding	1.03596436243447	0.899161434745867	0.880234823252343	1.77889335436952	1.94282107667384	0.903353939459771	2.0480019958047	1.78950874550192	1.73039043898608	0.198153707752934	0.681087142557212
Merged-chr8-26690142-4	chr8	26690066	26690266	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	134257.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	4.21883073893433	4.50490063380225	3.85445510289273	4.05220235144346	4.21053926762282	4.32978868295084	1.78630420474008	2.61226565477499	-0.76290252299648	0.231390805048225	0.725747702762793
Merged-chr16-78217091-4	chr16	78216987	78217187	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38367.0	NR_045698	100503619.0	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-97959837-3	chr5	97959732	97959932	+	940.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133738, intron 12 of 16)	MLT1E2|LTR|ERVL-MaLR	71130.0	NM_133738	71914.0	Mm.24842	NM_133738	ENSMUSG00000029338	Antxr2	2310046B19Rik|AW561899|CMG-2|CMG2|cI-35	anthrax toxin receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-60795311-4	chr18	60795208	60795408	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8541.0	NM_001042605	16149.0	Mm.439737	NM_010545	ENSMUSG00000024610	Cd74	CLIP|DHLAG|HLADG|Ia-GAMMA|Ii	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-177644381-4	chr1	177644277	177644477	+	874.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1434.0	NR_037994	75589.0	Mm.86666	NR_037994	ENSMUSG00000101746	2310043L19Rik	-	RIKEN cDNA 2310043L19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-114844461-4	chr9	114844300	114844500	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027294)	promoter-TSS (NM_027294)	-248.0	NM_027294	70031.0	Mm.150064	NM_027294	ENSMUSG00000041012	Cmtm8	2700018N07Rik|AA408515|Cklfsf8	CKLF-like MARVEL transmembrane domain containing 8	protein-coding	2.56498679027421	3.17991126415453	3.18092389349205	2.9762170704689	4.22951338093808	3.7013331788424	3.80126740725302	4.1299756287826	1.53764490551394	0.0040508854264617	0.056690346049791
Merged-chr17-27989950-4	chr17	27989840	27990040	+	883.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181413, intron 9 of 24)	intron (NM_181413, intron 9 of 24)	80634.0	NM_181413	224650.0	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59568019-4	chr15	59567914	59568114	+	840.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026746, intron 4 of 6)	intron (NM_026746, intron 4 of 6)	-80640.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-129401766-2	chr6	129401666	129401866	+	794.333313	f1_balb.idr|f1_c57bl6.idr	exon (NM_001204239, exon 3 of 5)	exon (NM_001204239, exon 3 of 5)	4469.0	NM_001204239	56760.0	Mm.30700	NM_019985	ENSMUSG00000030159	Clec1b	1810061I13Rik|Clec-2|Clec2	C-type lectin domain family 1, member b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-72375066-4	chr8	72374970	72375170	+	927.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289859, intron 16 of 21)	PB1D10|SINE|Alu	46404.0	NM_001122832	13859.0	Mm.288894	NM_007944	ENSMUSG00000006276	Eps15l1	9830147J04Rik|AI593686|Eps15-rs|Eps15R	epidermal growth factor receptor pathway substrate 15-like 1	protein-coding	2.42140836709148	1.40858336473034	2.16653920807719	2.7988539110179	2.67812793559233	2.74005523701613	1.6394425408629	2.36417676811633	0.269197593572269	0.769304831857486	0.998431161219273
Merged-chr13-80963427-2	chr13	80963327	80963527	+	868.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015587)	promoter-TSS (NR_015587)	-647.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-5165155-4	chr6	5165105	5165305	+	938.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_181595, exon 16 of 16)	3' UTR (NM_181595, exon 16 of 16)	28741.0	NM_011134	18979.0	Mm.237657	NM_011134	ENSMUSG00000002588	Pon1	Pon	paraoxonase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-36533520-3	chr8	36533415	36533615	+	785.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44324.0	NM_176952	319582.0	Mm.180924	NM_176952	ENSMUSG00000039620	6430573F11Rik	Kiaa1456|TRM9L|Trmt9b	RIKEN cDNA 6430573F11 gene	protein-coding	2.51646776083065	1.67785602644127	1.36757317251223	1.96196585248074	2.94568829015006	2.53618476616526	2.66109026236288	2.66775525580965	1.66570971556608	0.0587767530485729	0.358328349110683
Merged-chr9-40805467-4	chr9	40805374	40805574	+	908.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_031165)	TTS (NM_031165)	4201.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	0.608346845556294	0.284272055823735	0.509121736327572	0.822864690483507	1.86364681442397	0.287065086940226	0.274489752075304	0.263496183008883	1.4192847548378	0.42094793222832	0.900322118218157
Merged-chr2-117374008-4	chr2	117373912	117374112	+	767.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31135.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	2.34448413828854	3.27601106622788	2.89897816924222	1.51399203907435	2.8690822292668	3.21430673267646	2.92181008291019	3.09561775554741	0.667771436657853	0.380187360654095	0.871963632021681
Merged-chr10-67695004-4	chr10	67694909	67695109	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-123050.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-17523197-2	chr11	17523097	17523297	+	686.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	265509.0	NM_001330649	57316.0	Mm.287982	NM_020558	ENSMUSG00000000581	C1d	1110036E10Rik|AI875855|SUN-CoR	C1D nuclear receptor co-repressor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-93344750-1	chr2	93344650	93344850	+	593.0	f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-10263.0	NM_183180	241556.0	Mm.274159	NM_183180	ENSMUSG00000027217	Tspan18	2610042G18Rik|6720430O15|BB226562	tetraspanin 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-34616963-4	chr14	34616845	34617045	+	785.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16803.0	NM_013887	30044.0	Mm.272060	NM_013887	ENSMUSG00000021799	Opn4	1110007J02Rik|Gm533	opsin 4 (melanopsin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-129213896-3	chr3	129213793	129213993	+	712.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001287048)	promoter-TSS (NM_001287048)	-39.0	NM_001287048	18741.0	Mm.246804	NM_011098	ENSMUSG00000028023	Pitx2	9430085M16Rik|Brx1|Brx1b|Munc30|Otlx2|Ptx2|Rieg	paired-like homeodomain transcription factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-40251134-4	chr4	40251017	40251217	+	994.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11292.0	NM_172689	230073.0	Mm.86382	NM_172689	ENSMUSG00000040296	Ddx58	6430573D20Rik|C330021E21|RIG-I|RLR-1	DEAD (Asp-Glu-Ala-Asp) box polypeptide 58	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-23821721-3	chr18	23821629	23821829	+	668.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153058, intron 1 of 6)	intron (NM_153058, intron 1 of 6)	17759.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-95887333-4	chr8	95887211	95887411	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010325, intron 1 of 9)	intron (NM_010325, intron 1 of 9)	1054.0	NM_010325	14719.0	Mm.230169	NM_010325	ENSMUSG00000031672	Got2	AL022787|FABP-pm|Got-2|Kyat4|mAspAT	glutamatic-oxaloacetic transaminase 2, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-112321285-1	chr5	112321185	112321385	+	1000.0	f1_balb.idr	Intergenic	Intergenic	-5084.0	NM_018783	54723.0	Mm.172947	NM_018783	ENSMUSG00000029345	Tfip11	2810002G02Rik|AF097181|AW046167|Srr1|TIP33|Tip39	tuftelin interacting protein 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-19183614-4	chr3	19183527	19183727	+	969.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3693.0	NM_001253390	67472.0	Mm.45125	NM_026182	ENSMUSG00000027601	Mtfr1	1300002C08Rik|1700080D04Rik|2810026O10Rik|4930579E05Rik|Chppr|Fam54a2	mitochondrial fission regulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-125749218-4	chr10	125749133	125749333	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-216986.0	NM_177152	320398.0	Mm.275586	NM_177152	ENSMUSG00000020105	Lrig3	9030421L11Rik|9130004I02Rik|9430095K15Rik|mKIAA3016	leucine-rich repeats and immunoglobulin-like domains 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32706443-2	chr2	32706343	32706543	+	665.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_130860, exon 7 of 7)	3' UTR (NM_130860, exon 7 of 7)	6341.0	NM_130860	107951.0	Mm.27557	NM_130860	ENSMUSG00000009555	Cdk9	PITALRE	cyclin-dependent kinase 9 (CDC2-related kinase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94909549-4	chr10	94909469	94909669	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018797, intron 3 of 30)	intron (NM_018797, intron 3 of 30)	35009.0	NM_018797	54712.0	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100853519-4	chr7	100853388	100853588	+	860.4464109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177073, intron 1 of 10)	intron (NM_177073, intron 1 of 10)	9925.0	NM_001358914	320100.0	Mm.40336	NM_177073	ENSMUSG00000008318	Relt	E430021K24Rik|Tnfrsf19l	RELT tumor necrosis factor receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-14859657-4	chr8	14859649	14859849	+	990.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28787.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-112589127-3	chr12	112589030	112589230	+	962.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198411, intron 1 of 22)	intron (NM_198411, intron 1 of 22)	346.0	NM_198411	70435.0	Mm.250193	NM_198411	ENSMUSG00000037679	Inf2	2610204M08Rik|AA589465|AW125550|EG629699	inverted formin, FH2 and WH2 domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-17375764-4	chr17	17375663	17375863	+	880.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025934, intron 1 of 9)	intron (NM_025934, intron 1 of 9)	1431.0	NM_025934	67045.0	Mm.35117	NM_025934	ENSMUSG00000023852	Riok2	2010110K24Rik|2410085M17Rik	RIO kinase 2	protein-coding	2.53625076104225	2.87639686436136	1.3978073719855	3.32994376504392	1.02889621196253	1.15542075038095	1.64751936323402	1.94490352030935	-2.85505616960047	0.00707677081853276	0.0855546223792597
Merged-chr7-142389444-3	chr7	142389328	142389528	+	902.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1558.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-76484307-1	chr11	76484207	76484407	+	549.0	f1_balb.idr	intron (NM_001346670, intron 2 of 21)	intron (NM_001346670, intron 2 of 21)	10188.0	NM_001346670	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-30966555-2	chr5	30966455	30966655	+	591.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2122.0	NM_053085	69852.0	Mm.57874	NM_053085	ENSMUSG00000006642	Tcf23	2010002O16Rik|Out|bHLHa24	transcription factor 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-102525299-4	chr15	102525231	102525431	+	771.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018787)	promoter-TSS (NM_018787)	-710.0	NM_018787	54615.0	Mm.445915	NM_018787	ENSMUSG00000023052	Npff	-	neuropeptide FF-amide peptide precursor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19257573-4	chr7	19257495	19257695	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_104069, exon 11 of 11)	non-coding (NR_104069, exon 11 of 11)	14259.0	NM_001282021	22323.0	Mm.9684	NM_009499	ENSMUSG00000030403	Vasp	-	vasodilator-stimulated phosphoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-85481607-1	chr1	85481507	85481707	+	670.0	f1_balb.idr	Intergenic	Intergenic	117203.0	NM_030194	109032.0	Mm.335802	NM_030194	ENSMUSG00000070034	Sp110	5031415C07Rik|52kDa|5830484A20Rik|Ifi75|Ipr1	Sp110 nuclear body protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-110860851-2	chr5	110860751	110860951	+	988.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016681, intron 7 of 14)	intron (NM_016681, intron 7 of 14)	-18952.0	NM_001267622	209683.0	Mm.295660	NM_024477	ENSMUSG00000033209	Ttc28	2310015L07Rik|6030435N04|AI428795|AI851761|BC002262|TPRBK	tetratricopeptide repeat domain 28	protein-coding	0.703164959856085	1.19235936789913	0.184647739386734	0.178226716690341	0.16905428610056	0.194734279252043	0.186473116757564	0.785251099525432	-1.54528614535746	0.450069320504593	1
Merged-chr5-135686151-1	chr5	135686051	135686251	+	562.0	f1_c57bl6.idr	Intergenic	Intergenic	-2994.0	NM_008898	18984.0	Mm.3863	NM_008898	ENSMUSG00000005514	Por	4933424M13Rik|CPR|CYPOR|P450R	P450 (cytochrome) oxidoreductase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-25516717-2	chr14	25516617	25516817	+	615.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 2 of 23)	intron (NM_183208, intron 2 of 23)	-17722.0	NR_037236	100526533.0		NR_037236	ENSMUSG00000093081	Mir3075	mir-3075|mmu-mir-3075	microRNA 3075	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43443284-10	chr4	43443168	43443368	+	882.383301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_011571, exon 1 of 10)	5' UTR (NM_011571, exon 1 of 10)	991.0	NM_011571	21754.0	Mm.485441	NM_011571	ENSMUSG00000028458	Tesk1	AI326901	testis specific protein kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-68278477-4	chr8	68278376	68278576	+	890.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028182, intron 1 of 8)	intron (NM_028182, intron 1 of 8)	1948.0	NM_028182	72281.0	Mm.40974	NM_028182	ENSMUSG00000053886	Sh2d4a	2210402M20Rik|SH2A	SH2 domain containing 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-77756278-4	chr9	77756193	77756393	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151778, intron 1 of 16)	intron (NR_151778, intron 1 of 16)	1758.0	NM_010295	14629.0	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	2.15344316142232	2.03030041315088	1.95807969585716	1.48895541067925	1.81474248543508	2.26924503848537	1.10771547064426	1.08768710525305	-0.701296105628967	0.539146080237506	0.954403851908463
Merged-chr1-34831353-4	chr1	34831265	34831465	+	870.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160236, intron 2 of 6)	intron (NM_001160236, intron 2 of 6)	11685.0	NM_174997	214469.0	Mm.120151	NM_174997	ENSMUSG00000037503	Fam168b	Mani|mKIAA4042	family with sequence similarity 168, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-8611292-2	chr11	8611192	8611392	+	751.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 2 of 30)	intron (NM_001083587, intron 2 of 30)	53243.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114988110-6	chr11	114987947	114988147	+	871.2222289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145437, intron 1 of 3)	intron (NM_145437, intron 1 of 3)	1839.0	NM_145437	217305.0	Mm.275986	NM_145437	ENSMUSG00000034641	Cd300ld	4732429D16Rik|CLM5|Cd300ld1|LMIR4|MAIR-IV|clm-5	CD300 molecule like family member d	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-134547273-5	chr4	134547216	134547416	+	621.900024	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029100, intron 3 of 11)	intron (NM_029100, intron 3 of 11)	4850.0	NM_029100	74777.0	Mm.29773	NM_029100	ENSMUSG00000050989	Selenon	1110019I12Rik|AI414492|SelN|Sepn1	selenoprotein N	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125092560-2	chr6	125092460	125092660	+	750.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3421.0	NM_001346610	107932.0	Mm.333388	NM_145979	ENSMUSG00000063870	Chd4	9530019N15Rik|AA617397|BC005710|D6Ertd380e|Mi-2beta|mKIAA4075	chromodomain helicase DNA binding protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52059933-4	chr13	52059843	52060043	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-36798.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-96714242-1	chr9	96714142	96714342	+	542.0	f1_c57bl6.idr	intron (NM_001359959, intron 2 of 2)	intron (NM_001359959, intron 2 of 2)	5203.0	NM_001359960	245007.0	Mm.485954	NM_175537	ENSMUSG00000040433	Zbtb38	A930014K01Rik|CIBZ	zinc finger and BTB domain containing 38	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-110727936-3	chr10	110727857	110728057	+	900.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17482.0	NM_001358560	52679.0	Mm.11747	NM_178609	ENSMUSG00000020185	E2f7	A630014C11Rik|D10Ertd739e|E2F-7	E2F transcription factor 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-56224701-2	chr4	56224601	56224801	+	971.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	516724.0	NM_025271	11471.0	Mm.251434	NM_025271	ENSMUSG00000070980	Actl7b	Gm26657|Tact1	actin-like 7b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-64128132-3	chr15	64128033	64128233	+	959.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 17 of 28)	intron (NM_001276461, intron 17 of 28)	-67685.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-108476481-2	chr6	108476381	108476581	+	640.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 46 of 61)	intron (NM_010585, intron 46 of 61)	-13262.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	0.620940889794287	1.86025194693635	0.881480999493928	0.641478198061143	0.981010779010022	1.56675028642597	1.49949902297959	0.64359710208213	0.33914084854804	0.822515537272568	0.998431161219273
Merged-chr11-117072326-4	chr11	117072228	117072428	+	996.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4455.0	NR_027059	76972.0	Mm.309167	NR_027059	ENSMUSG00000086859	Snhg20	2810008D09Rik	small nucleolar RNA host gene 20	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-8577677-2	chr11	8577533	8577733	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 4 of 30)	B3|SINE|B2	86902.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0.604822741872026	0.652251897022941	0.637134102978258	1.70108574048469	0.607901580868678	1.55168638095297	1.06263009030399	1.71247737107975	1.05813475025172	0.50806430125284	0.943374049681311
Merged-chr6-135193135-1	chr6	135193035	135193235	+	792.166687	f0_balb.idr	non-coding (NR_040296, exon 5 of 5)	non-coding (NR_040296, exon 5 of 5)	4655.0	NR_040296	100502888.0	Mm.437844	NR_040296	ENSMUSG00000108239	Gm19434	-	predicted gene, 19434	ncRNA	3.04657649014922	1.56549347905121	2.82072439159982	2.53308303714969	2.30748718272475	2.71711944956785	3.104963021628	2.8478159143695	0.312291335492071	0.693616945166253	0.997536945022547
Merged-chr1-152902437-1	chr1	152902337	152902537	+	1000.0	f0_c57.idr	intron (NM_001160257, intron 1 of 23)	CpG	208.0	NM_001359257	226517.0	Mm.270775	NM_001005507	ENSMUSG00000042772	Smg7	9430023P16Rik|mKIAA0250	Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-54963038-3	chr11	54962976	54963176	+	951.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199276)	promoter-TSS (NM_001199276)	-136.0	NM_001271455	57783.0	Mm.259671	NM_021327	ENSMUSG00000020400	Tnip1	ABIN|ABIN-1|ABIN1|AU018810|Naf1|Nef|VAN	TNFAIP3 interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124446031-5	chr5	124445926	124446126	+	934.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310727)	promoter-TSS (NM_001310727)	527.0	NM_001310723	67956.0	Mm.137966	NM_030241	ENSMUSG00000049327	Kmt5a	2410195B05Rik|AA617402|AW536475|PR-SET7|PR/SET07|Setd8	lysine methyltransferase 5A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-3525924-4	chr13	3525784	3525984	+	986.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12191.0	NM_008112	14569.0	Mm.153226	NM_008112	ENSMUSG00000021218	Gdi2	GDI-B|GDIB|Gdi3	guanosine diphosphate (GDP) dissociation inhibitor 2	protein-coding	0.407127295807333	0.281211949852654	0.956676001434293	0.437390683748767	0.411662200945001	0.28277345213916	0.969510312002225	0.440546950642995	0.0392511141222079	0.981925746117715	1
Merged-chr15-11718202-1	chr15	11718102	11718302	+	542.0	f1_balb.idr	Intergenic	Lx3C|LINE|L1	187472.0	NM_008728	18162.0	Mm.25259	NM_008728	ENSMUSG00000022206	Npr3	ANP-C|ANPR-C|EF-2|NPR-C|lgj|stri	natriuretic peptide receptor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32404868-4	chr2	32404780	32404980	+	905.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8990.0	NM_133783	96979.0	Mm.28048	NM_133783	ENSMUSG00000026820	Ptges2	0610038H10Rik|C79137|Gbf1|Mpges2|Pges2	prostaglandin E synthase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3724965-2	chr19	3724877	3725077	+	728.083374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	16566.0	NM_001358257	72056.0	Mm.23780	NM_028077	ENSMUSG00000035372	1810055G02Rik	AI256204	RIKEN cDNA 1810055G02 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-146330341-2	chr5	146330241	146330441	+	772.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-54665.0	NM_145155	245880.0	Mm.472750	NM_145155	ENSMUSG00000029636	Wasf3	Scar3|Wave3	WAS protein family, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-82980560-4	chr9	82980474	82980674	+	755.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5085.0	NM_001081216	83946.0	Mm.221688	NM_031879	ENSMUSG00000032253	Phip	2810004D21Rik|4632404O06Rik|Ndrp|Wdr11	pleckstrin homology domain interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-30027889-4	chr17	30027786	30027986	+	987.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151443, intron 1 of 4)	intron (NR_151443, intron 1 of 4)	22847.0	NM_001356265	21769.0	Mm.220972	NM_148926	ENSMUSG00000044477	Zfand3	AW539211|TEG-27|Tex27	zinc finger, AN1-type domain 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-108546247-1	chr4	108546147	108546347	+	822.0	f0_c57.idr	intron (NM_175472, intron 25 of 30)	intron (NM_175472, intron 25 of 30)	33089.0	NM_172697	230596.0	Mm.157534	NM_172697	ENSMUSG00000063800	Prpf38a	2410002M20Rik	PRP38 pre-mRNA processing factor 38 (yeast) domain containing A	protein-coding	-1.18378942727406	-1.15669478905697	-0.457913181653105	-1.17806440097404	-1.18323730008524	-1.15415234459186	-1.16577117532349	-1.17633933179771	-2.81844548480871	0.412768592413622	1
Merged-chr15-67345679-4	chr15	67345565	67345765	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045140, intron 7 of 8)	RMER19A|LTR|ERVK	118896.0	NR_045140	69334.0	Mm.63770	NR_045140	ENSMUSG00000102069	1700012I11Rik	-	RIKEN cDNA 1700012I11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-121138241-2	chr6	121138141	121138341	+	743.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7219.0	NM_001270475	194401.0	Mm.122399	NM_153396	ENSMUSG00000051586	Mical3	C130040D16Rik|Mical-3|mKIAA1364	microtubule associated monooxygenase, calponin and LIM domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-112454980-4	chr2	112454894	112455094	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133749)	promoter-TSS (NM_133749)	-31.0	NM_133749	73024.0	Mm.268027	NM_133749	ENSMUSG00000055943	Emc7	2900064A13Rik|AI451465|ORF3|c11orf3	ER membrane protein complex subunit 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-14350944-4	chr16	14350840	14351040	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB3|LINE|L1	-10618.0	NM_008576	17250.0	Mm.196634	NM_008576	ENSMUSG00000023088	Abcc1	Abcc1a|Abcc1b|MRP|Mdrap|Mrp1	ATP-binding cassette, sub-family C (CFTR/MRP), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-102142350-1	chr5	102142250	102142450	+	606.0	f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-72429.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	-1.53362919331644	-1.50201671710775	-1.51157659084044	-1.08120497225282	-1.53141005593807	-1.49994505258991	-1.50941244497383	-1.51802371459528	-1.94474658522739	0.577200604274218	1
Merged-chr8-72572574-2	chr8	72572474	72572674	+	628.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_151663, intron 1 of 2)	intron (NR_151663, intron 1 of 2)	751.0	NM_001357279	74166.0	Mm.212927	NM_144534	ENSMUSG00000031791	Tmem38a	1110001E17Rik|AI413399|SPR-27|TRIC-A|mg33a	transmembrane protein 38A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-94665120-1	chr9	94665020	94665220	+	773.0	f0_balb.idr	Intergenic	Intergenic	-4772.0	NM_177909	331004.0	Mm.326125	NM_177909	ENSMUSG00000031129	Slc9a9	5730527A11Rik|9930105B05|AI854429|Nhe9	solute carrier family 9 (sodium/hydrogen exchanger), member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-126597124-5	chr3	126596974	126597174	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001293665, exon 1 of 20)	5' UTR (NM_001293665, exon 1 of 20)	123.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-112399331-2	chr13	112399231	112399431	+	818.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-64739.0	NM_010560	16195.0	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127598796-3	chr10	127598739	127598939	+	849.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 6 of 88)	intron (NM_008512, intron 6 of 88)	22309.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	1.39547718366867	0.792749921343785	0.77235601012785	1.1841335534956	1.40965093698642	2.48117924420483	0.77691678676562	1.62271281782324	2.16080264452551	0.110290056739586	0.520558654902261
Merged-chr11-111159494-4	chr11	111159411	111159611	+	899.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	93347.0	NM_008425	16518.0	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141473490-2	chr7	141473390	141473590	+	721.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025593, intron 1 of 1)	intron (NM_025593, intron 1 of 1)	1663.0	NM_025593	66491.0	Mm.380115	NM_025593	ENSMUSG00000038489	Polr2l	2510029B14Rik	polymerase (RNA) II (DNA directed) polypeptide L	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-35729832-4	chr7	35729733	35729933	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178704, intron 3 of 18)	intron (NM_178704, intron 3 of 18)	24621.0	NM_178704	233115.0	Mm.257808	NM_178704	ENSMUSG00000043671	Dpy19l3	6030410G08|9330164H19Rik	dpy-19-like 3 (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-103793653-3	chr14	103793521	103793721	+	839.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MD1|LINE|L1	50080.0	NM_007904	13618.0	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-45048835-4	chr10	45048738	45048938	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18376.0	NM_011156	19072.0	Mm.10281	NM_011156	ENSMUSG00000019849	Prep	AI047692|AI450383|D10Wsu136e|PEP|Pop	prolyl endopeptidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-128489788-2	chr8	128489688	128489888	+	670.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358959, intron 12 of 16)	intron (NM_001358959, intron 12 of 16)	130547.0	NR_035436	100316680.0		NR_035436	ENSMUSG00000084523	Mir1903	Mirn1903|mmu-mir-1903	microRNA 1903	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28525049-3	chr17	28524948	28525148	+	869.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-5813.0	NM_026290	67645.0	Mm.46170	NM_026290	ENSMUSG00000024223	Armc12	4930511I11Rik|AV041658	armadillo repeat containing 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-61107790-4	chr18	61107716	61107916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037859, intron 2 of 21)	intron (NM_001037859, intron 2 of 21)	2244.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-45387802-2	chr13	45387702	45387902	+	915.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-1940.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-50191024-2	chr17	50190924	50191124	+	826.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181397)	promoter-TSS (NM_181397)	-527.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88325020-4	chr3	88324908	88325108	+	897.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020003)	promoter-TSS (NM_020003)	-15.0	NM_020003	56700.0	Mm.439922	NM_020003	ENSMUSG00000001418	Glmp	0610031J06Rik|AB027141|NCU-G1	glycosylated lysosomal membrane protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-60615505-7	chr3	60615405	60615605	+	992.7551269999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253711, intron 5 of 7)	intron (NM_001253711, intron 5 of 7)	114326.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124425186-1	chr6	124425086	124425286	+	551.0	f0_balb.idr	Intergenic	Intergenic	-9331.0	NM_001360570	19305.0	Mm.22418	NM_008995	ENSMUSG00000005069	Pex5	AW212715|ESTM1|PTS1-BP|PTS1R|PXR1P|Pxr1|X83306	peroxisomal biogenesis factor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-33978705-4	chr2	33978608	33978808	+	997.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-90762.0	NM_175184	72543.0	Mm.254914	NM_175184	ENSMUSG00000038740	Mvb12b	2610200O14Rik|2610528K11Rik|AI414895|Fam125b	multivesicular body subunit 12B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46745693-4	chr8	46745598	46745798	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152560, intron 1 of 7)	intron (NR_152560, intron 1 of 7)	5953.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-45035755-2	chr14	45035655	45035855	+	623.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	47644.0	NM_008964	19217.0	Mm.4630	NM_008964	ENSMUSG00000037759	Ptger2	EP2|Ptgerep2	prostaglandin E receptor 2 (subtype EP2)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-67839271-2	chr9	67839171	67839371	+	697.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1125.0	NM_177184	320528.0	Mm.241454	NM_177184	ENSMUSG00000035284	Vps13c	AI552542|AV026040|C230055H22Rik|W51662|chorein	vacuolar protein sorting 13C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-68514131-4	chr11	68514023	68514223	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004435, intron 1 of 19)	MurERV4-int|LTR|ERVK	11104.0	NR_126154	104709.0	Mm.234573	NM_001004435	ENSMUSG00000046207	Pik3r6	BB220380|p84|p84 PIKAP|p87(PIKAP)|p87PIKAP	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-58912743-4	chr4	58912627	58912827	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172381)	promoter-TSS (NM_172381)	22.0	NM_172381	230249.0	Mm.234801	NM_172381	ENSMUSG00000050812	AI314180	AW558785|BB181316|Ecpas|mKIAA0368	expressed sequence AI314180	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-121311025-1	chr14	121310925	121311125	+	553.0	f1_c57bl6.idr	intron (NM_145465, intron 2 of 10)	intron (NM_145465, intron 2 of 10)	62319.0	NR_155502	320268.0	Mm.435974	NR_155502		B930095G15Rik	-	RIKEN cDNA B930095G15 gene	ncRNA	1.45685362680181	0.771780662847471	1.39379873638139	0.749816859149101	1.28273779357056	1.46337925770743	1.40650251965585	0.751507934975179	0.448708383331966	0.759780121008708	0.998431161219273
Merged-chr11-5786858-2	chr11	5786758	5786958	+	909.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-1625.0	NM_001146309	13169.0	Mm.256925	NM_013810	ENSMUSG00000020476	Dbnl	Abp1|SH3P7|mAbp1	drebrin-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-136170714-4	chr5	136170645	136170845	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178751)	promoter-TSS (NM_178751)	-89.0	NM_178751	269717.0	Mm.308396	NM_178751	ENSMUSG00000039747	Orai2	A730041O15Rik|Tmem142b	ORAI calcium release-activated calcium modulator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-148489110-4	chr5	148489014	148489214	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA4A|LINE|L1	62559.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-34766729-2	chr13	34766629	34766829	+	721.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4b|LINE|L1	27087.0	NM_138746	108161.0	Mm.41991	NM_138746	ENSMUSG00000038246	Fam50b	D0H6S2654E|X5L|XAP-5-like	family with sequence similarity 50, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-13007808-4	chr17	13007697	13007897	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013671)	promoter-TSS (NM_013671)	-42.0	NM_013671	20656.0	Mm.290876	NM_013671	ENSMUSG00000006818	Sod2	MnSOD|Sod-2	superoxide dismutase 2, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-64053756-2	chr15	64053656	64053856	+	701.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360037, intron 1 of 11)	intron (NM_001360037, intron 1 of 11)	6008.0	NM_001360038	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70633798-1	chr8	70633698	70633898	+	985.0	f1_c57bl6.idr	Intergenic	Intergenic	-1342.0	NM_001330687	23886.0	Mm.31325	NM_011819	ENSMUSG00000038508	Gdf15	MIC-1|NAG-1|SBF	growth differentiation factor 15	protein-coding	1.74842969261506	1.34053285432617	0.877170538028174	0.862820722368015	1.46611078300471	2.01549762821158	0.881215240689228	1.95650545686531	1.27056137811118	0.346430907526886	0.847223405729226
Merged-chr15-90677833-2	chr15	90677733	90677933	+	701.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033851, intron 1 of 3)	intron (NM_001033851, intron 1 of 3)	1555.0	NM_025815	66871.0	Mm.290991	NM_025815	ENSMUSG00000052560	Cpne8	1200003E11Rik|1500031E20Rik	copine VIII	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-25039952-2	chr8	25039852	25040052	+	921.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081187)	promoter-TSS (NM_001081187)	-990.0	NM_001081187	330723.0	Mm.334452	NM_001081187	ENSMUSG00000037406	Htra4	B430206E18Rik	HtrA serine peptidase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-64368423-3	chr14	64368322	64368522	+	700.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253715, intron 1 of 4)	intron (NM_001253715, intron 1 of 4)	48534.0	NM_001253716	110265.0	Mm.26713	NM_026322	ENSMUSG00000054733	Msra	2310045J23Rik|6530413P12Rik|MSR-A	methionine sulfoxide reductase A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141658971-4	chr4	141658867	141659067	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347237, intron 1 of 18)	intron (NM_001347237, intron 1 of 18)	5148.0	NM_001347237	69582.0	Mm.33220	NM_001033150	ENSMUSG00000028917	Plekhm2	2310034J19Rik|AI854247|mKIAA0842	pleckstrin homology domain containing, family M (with RUN domain) member 2	protein-coding	3.21979473380866	2.9970805660994	3.12491676577728	4.24503297993203	3.68549849811015	2.5458894596156	3.66570212906608	2.94117251314446	-0.321898423461838	0.608525200761788	0.974576632476413
Merged-chr15-67119547-2	chr15	67119474	67119674	+	637.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009177, intron 3 of 8)	intron (NM_009177, intron 3 of 8)	57308.0	NM_009177	20442.0	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-88379040-4	chr6	88378938	88379138	+	893.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023060, intron 1 of 6)	intron (NM_023060, intron 1 of 6)	67501.0	NM_023060	65967.0	Mm.333237	NM_023060	ENSMUSG00000033216	Eefsec	Selb|mSelB|sec	eukaryotic elongation factor, selenocysteine-tRNA-specific	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-92753891-3	chr1	92753790	92753990	+	978.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-77755.0	NM_016696	14733.0	Mm.297976	NM_016696	ENSMUSG00000034220	Gpc1	AI462976	glypican 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-129759982-4	chr7	129759897	129760097	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	168134.0	NM_172255	207425.0	Mm.229323	NM_172255	ENSMUSG00000042055	Wdr11	2900055P10Rik|AW489876|Brwd2|mKIAA1351	WD repeat domain 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-131546205-2	chr2	131546105	131546305	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_013460, exon 2 of 2)	exon (NM_013460, exon 2 of 2)	16080.0	NM_013460	11550.0	Mm.389380	NM_013460	ENSMUSG00000027335	Adra1d	Adra-1|Adra1|Adra1a|Gpcr8|Spr8|[a]1d|alpha1D-AR	adrenergic receptor, alpha 1d	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71665577-6	chr8	71665388	71665588	+	880.7222289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029873, intron 3 of 41)	(A)n|Simple_repeat|Simple_repeat	6269.0	NM_001029873	382018.0	Mm.334606	NM_001029873	ENSMUSG00000034799	Unc13a	2410078G03Rik|Munc13-1	unc-13 homolog A (C. elegans)	protein-coding	0.675884719319504	0.719088256211272	1.49576451400843	0.694351946999944	1.01437895362473	1.78499525695325	1.39285806673026	1.21435503678527	1.74346683119807	0.236807903674138	0.733553768261449
Merged-chr4-133871985-1	chr4	133871885	133872085	+	588.0	f1_c57bl6.idr	exon (NM_001285506, exon 2 of 21)	exon (NM_001285506, exon 2 of 21)	2746.0	NM_001285506	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-77974551-4	chr10	77974451	77974651	+	979.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4099.0	NM_026431	67884.0	Mm.297512	NM_026431	ENSMUSG00000020284	1810043G02Rik	AV026620|D10Jhu13e	RIKEN cDNA 1810043G02 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-49364788-1	chr2	49364688	49364888	+	546.0	f1_balb.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-86698.0	NM_172663	227867.0	Mm.29167	NM_172663	ENSMUSG00000069495	Epc2	5830499L14|D2Ertd694e	enhancer of polycomb homolog 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-29516561-2	chr17	29516461	29516661	+	672.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25516.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-150892206-2	chr5	150892106	150892306	+	669.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER34A1|LTR|ERV1	-60401.0	NM_013823	16591.0	Mm.6500	NM_013823	ENSMUSG00000058488	Kl	alpha-kl	klotho	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-123026192-4	chr8	123026140	123026340	+	886.1062619999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 1 of 12)	B1F|SINE|Alu	16044.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-86107565-3	chr10	86107462	86107662	+	563.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038024, intron 2 of 2)	intron (NR_038024, intron 2 of 2)	11708.0	NR_038024	78170.0	Mm.444790	NR_038024	ENSMUSG00000112493	4930486F22Rik	-	RIKEN cDNA 4930486F22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-32409205-3	chr3	32409138	32409338	+	691.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26913.0	NM_008839	18706.0	Mm.260521	NM_008839	ENSMUSG00000027665	Pik3ca	6330412C24Rik|caPI3K|p110|p110alpha	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-46839027-4	chr7	46838900	46839100	+	965.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6804.0	NM_010699	16828.0	Mm.29324	NM_010699	ENSMUSG00000063229	Ldha	Ldh1|Ldhm|l7R2	lactate dehydrogenase A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-113749267-4	chr6	113749135	113749335	+	924.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001036684, intron 19 of 19)	intron (NM_001036684, intron 19 of 19)	-8554.0	NM_024206	110379.0	Mm.29296	NM_024206	ENSMUSG00000030298	Sec13	1110003H02Rik|Sec13l1|Sec13r	SEC13 homolog, nuclear pore and COPII coat complex component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-37139351-4	chr10	37139240	37139440	+	899.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008538)	promoter-TSS (NM_008538)	-414.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-128302541-3	chr8	128302445	128302645	+	869.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-24320.0	NR_105822	102465212.0		NR_105822	ENSMUSG00000099326	Mir21c	Gm28013|mmu-mir-21c	microRNA 21c	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85575030-4	chr12	85574938	85575138	+	961.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-24067.0	NM_001205052	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-147431163-4	chr5	147431081	147431281	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028291, intron 1 of 18)	CpG	1025.0	NM_028291	72587.0	Mm.320469	NM_028291	ENSMUSG00000029647	Pan3	2700050F09Rik|A430027N15Rik|AU014670	PAN3 poly(A) specific ribonuclease subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-134063725-8	chr1	134063612	134063812	+	957.4874880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15443.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-51459780-4	chr10	51459645	51459845	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20867.0	NM_008147	14727.0	Mm.439661	NM_008147	ENSMUSG00000112023	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-122019744-2	chr10	122019644	122019844	+	843.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081037, intron 1 of 21)	intron (NM_001081037, intron 1 of 21)	27571.0	NM_001242411	117600.0	Mm.288698	NM_001081037	ENSMUSG00000020121	Srgap1	4930572H05Rik|Arhgap13	SLIT-ROBO Rho GTPase activating protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-9012857-3	chr5	9012764	9012964	+	669.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Rod|LINE|L1	-15718.0	NM_023733	74114.0	Mm.28197	NM_023733	ENSMUSG00000003623	Crot	1200003H03Rik	carnitine O-octanoyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85339453-4	chr12	85339366	85339566	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145138)	promoter-TSS (NM_145138)	-104.0	NM_145138	217718.0	Mm.29071	NM_145138	ENSMUSG00000034290	Nek9	C130021H08Rik	NIMA (never in mitosis gene a)-related expressed kinase 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-93474200-2	chr2	93474100	93474300	+	618.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11250.0	NM_001136055	12521.0	Mm.4261	NM_007656	ENSMUSG00000027215	Cd82	AA682076|AL023070|C33|IA4|Kai1|Tspan27	CD82 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100372696-1	chr7	100372596	100372796	+	627.0	f0_balb.idr	promoter-TSS (NM_028292)	promoter-TSS (NM_028292)	463.0	NM_001017985	277939.0	Mm.276374	NM_001017985	ENSMUSG00000047248	C2cd3	AU020772	C2 calcium-dependent domain containing 3	protein-coding	1.09270660658585	2.25220114026448	0.735673721304634	0.718211466806602	1.10364913335963	2.27243491141994	0.74056358064517	1.34169787570167	0.325228685719032	0.815927523478062	0.998431161219273
Merged-chr6-42324555-5	chr6	42324400	42324600	+	843.4500119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001113327, exon 1 of 6)	5' UTR (NM_001113327, exon 1 of 6)	140.0	NM_001286584	76156.0	Mm.234314	NM_029528	ENSMUSG00000029861	Fam131b	6330503C03Rik|6530406I18Rik|AV277466	family with sequence similarity 131, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-60209266-4	chr18	60209183	60209383	+	877.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13D3|LTR|ERVK	-2794.0	NM_001033767	240327.0	Mm.357104	NM_001033767	ENSMUSG00000073555	Gm4951	EG240327|Ifgga2	predicted gene 4951	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-78396416-4	chr10	78396315	78396515	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12130.0	NR_105872	102465547.0		NR_105872	ENSMUSG00000098376	Mir6907	Gm27351|mmu-mir-6907	microRNA 6907	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-96902921-4	chr5	96902807	96903007	+	625.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA4|LINE|L1	-18365.0	NR_131152	666266.0	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-77604539-4	chr11	77604448	77604648	+	868.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144825, intron 1 of 19)	intron (NM_144825, intron 1 of 19)	3267.0	NM_144825	216965.0	Mm.340436	NM_144825	ENSMUSG00000017291	Taok1	2810468K05Rik|AU020252|D130018F14Rik|Map3k16|Markk|Psk2|mKIAA1361	TAO kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-73093547-2	chr9	73093447	73093647	+	841.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301230, intron 6 of 6)	intron (NM_001301230, intron 6 of 6)	-8851.0	NM_025890	66991.0	Mm.471745	NM_025890	ENSMUSG00000092622	Khdc3	2410004A20Rik|AI467128|FILIA|OEEP48	KH domain containing 3, subcortical maternal complex member	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-113075498-4	chr6	113075386	113075586	+	687.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027009, intron 1 of 1)	intron (NR_027009, intron 1 of 1)	1758.0	NR_027010	14910.0	Mm.280950	NR_027008	ENSMUSG00000086429	Gt(ROSA)26Sor	AV258896|Gtrgeo26|Gtrosa26|R26|ROSA26|Thumpd3as1	gene trap ROSA 26, Philippe Soriano	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-10769872-2	chr16	10769772	10769972	+	845.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15664.0	NM_009896	12703.0	Mm.130	NM_009896	ENSMUSG00000038037	Socs1	Cish1|Cish7|JAB|SOCS-1|SSI-1	suppressor of cytokine signaling 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81239390-2	chr10	81239290	81239490	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001034895, intron 2 of 17)	intron (NM_001034895, intron 2 of 17)	6227.0	NM_001034895	103406.0	Mm.158783	NM_001034895	ENSMUSG00000034949	Zfr2	2010013I23Rik|9130206N08Rik|AW045600|mKIAA1086	zinc finger RNA binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-33652451-4	chr8	33652309	33652509	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010344)	promoter-TSS (NM_010344)	-829.0	NM_010344	14782.0	Mm.283573	NM_010344	ENSMUSG00000031584	Gsr	AI325518|D8Ertd238e|Gr-1|Gr1	glutathione reductase	protein-coding	5.06625400243904	4.76054819826658	4.95262542757563	5.41957641251152	4.04043221637844	3.3622882563854	5.02402387713373	4.85055725711202	-0.732531313149765	0.0736659642284478	0.410199987072827
Merged-chr10-80927134-2	chr10	80927034	80927234	+	659.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-2957.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-73286811-4	chr12	73286721	73286921	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029580)	promoter-TSS (NM_029580)	-27.0	NM_001037717	625098.0	Mm.32075	NM_001037717	ENSMUSG00000044712	Slc38a6	AW322671|EG625098	solute carrier family 38, member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-109017719-2	chr9	109017619	109017819	+	622.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_153430, intron 9 of 13)	intron (NR_153430, intron 9 of 13)	-20848.0	NM_001284332	66940.0	Mm.196533	NM_025858	ENSMUSG00000025647	Shisa5	2310008D10Rik|6430628I05Rik|Scotin|mShisa5	shisa family member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-28136079-4	chr6	28135963	28136163	+	824.104126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361125)	promoter-TSS (NM_001361125)	-917.0	NM_001361125	14823.0	Mm.320732	NM_008174	ENSMUSG00000024211	Grm8	A230002O04|GluR8|Gprc1h|mGluR8	glutamate receptor, metabotropic 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150898898-4	chr4	150898790	150898990	+	950.741699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020569, intron 6 of 6)	intron (NM_020569, intron 6 of 6)	11031.0	NM_020569	57320.0	Mm.277349	NM_020569	ENSMUSG00000028964	Park7	DJ-1|Dj1	Parkinson disease (autosomal recessive, early onset) 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35821655-4	chr17	35821580	35821780	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133662)	promoter-TSS (NM_133662)	-33.0	NM_133662	15937.0	Mm.25613	NM_133662	ENSMUSG00000003541	Ier3	AI663993|IEX-1|cI-3|gly96	immediate early response 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-83642800-2	chr7	83642700	83642900	+	622.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_023377)	TTS (NM_023377)	10783.0	NM_023377	170460.0	Mm.357953	NM_023377	ENSMUSG00000046027	Stard5	2310058G22Rik|AI607880|D7Ertd152e	StAR-related lipid transfer (START) domain containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-21650602-4	chr17	21650501	21650701	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166497)	promoter-TSS (NM_001166497)	-10.0	NM_001166497	73229.0	Mm.296733	NM_001166497	ENSMUSG00000035868	Zfp983	3110052M02Rik|mszf57|mszf71	zinc finger protein 983	protein-coding	0.954483409924914	1.03260786092639	2.22530401553028	1.41816964492577	1.50919920862854	1.52448441772588	2.56132321244876	1.97288452200324	1.2112636258149	0.306182371459489	0.806865344318695
Merged-chr19-25002308-3	chr19	25002193	25002393	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028785, intron 1 of 47)	MTE2a|LTR|ERVL-MaLR	2764.0	NM_028785	76088.0	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	2.26440723766917	1.78961487508474	1.44373793068264	2.52533611857456	3.60504298277316	3.23686820355888	2.85262283187665	3.18123183340169	2.27639936524093	0.00341247876227163	0.0498493346465929
Merged-chr1-105748532-3	chr1	105748429	105748629	+	723.861084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173187, intron 26 of 28)	intron (NM_173187, intron 26 of 28)	-32194.0	NM_009399	21934.0	Mm.6251	NM_009399	ENSMUSG00000026321	Tnfrsf11a	Ly109|ODFR|OFE|Rank|TRANCE-R|mRANK	tumor necrosis factor receptor superfamily, member 11a, NFKB activator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-128312855-4	chr7	128312760	128312960	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR49|LTR|ERVK	-14729.0	NM_145590	233913.0	Mm.220880	NM_145590	ENSMUSG00000030780	BC017158	-	cDNA sequence BC017158	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126555363-2	chr8	126555263	126555463	+	696.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38073.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-39253966-3	chr18	39253872	39254072	+	878.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361073, intron 17 of 21)	intron (NM_001361073, intron 17 of 21)	233273.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-112268101-1	chr5	112268001	112268201	+	600.0	f1_c57bl6.idr	intron (NM_001312893, intron 5 of 5)	intron (NM_001312893, intron 5 of 5)	-8590.0	NM_001326590	22022.0	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	-1.27480050717774	-0.604729833679879	-1.25573295904267	-1.26493563944758	-1.27428069156472	-1.24210192204986	-1.25319678955844	-1.26328836405502	-2.6632876257018	0.439827081912762	1
Merged-chr9-71189238-4	chr9	71189143	71189343	+	866.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110517, intron 5 of 5)	intron (NR_110517, intron 5 of 5)	20467.0	NR_110517	102635087.0	Mm.444536	NR_110517	ENSMUSG00000111429	Gm32511	-	predicted gene, 32511	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-121848257-4	chr5	121848168	121848368	+	811.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359949)	promoter-TSS (NM_001359949)	-729.0	NM_175474	231717.0	Mm.12654	NM_175474	ENSMUSG00000044134	Fam109a	A230106M15Rik|AU017694|IPIP27A|Ses1	family with sequence similarity 109, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-83622411-4	chr8	83622226	83622426	+	826.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13778.0	NM_001308227	81489.0	Mm.282092	NM_018808	ENSMUSG00000005483	Dnajb1	0610007I11Rik|DjB1|HSPF1|Hdj1|Hsp40	DnaJ heat shock protein family (Hsp40) member B1	protein-coding	1.66790619218053	0.998439233628004	2.2848329323954	1.36079318256918	1.30435008004344	1.77819956691435	0.982816260802974	1.97976369854614	-0.309294321984034	0.800619711403843	0.998431161219273
Merged-chr5-25527240-2	chr5	25527140	25527340	+	574.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2778.0	NR_027388	73571.0	Mm.105263	NR_027388	ENSMUSG00000101856	1700096K18Rik	-	RIKEN cDNA 1700096K18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-45149234-2	chr16	45149134	45149334	+	831.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028756, intron 4 of 6)	Lx5b|LINE|L1	9439.0	NM_001356453	74102.0	Mm.264984	NM_028756	ENSMUSG00000022664	Slc35a5	1010001J06Rik|AU021179|BB097433|D16Ertd450e|D730043G07Rik	solute carrier family 35, member A5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-36549414-4	chr5	36549326	36549526	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133910, intron 2 of 13)	intron (NM_133910, intron 2 of 13)	-18803.0	NM_001113364	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	4.25534621051109	4.11340744807751	3.83005625878661	3.86738045317475	4.59111761699811	3.82206045597758	3.69254498669583	5.0394882248769	0.507979607047616	0.273211037609219	0.776651246857229
Merged-chr10-81104079-2	chr10	81103979	81104179	+	630.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_049187)	promoter-TSS (NR_049187)	-537.0	NR_049187	100885826.0		NR_049187	ENSMUSG00000093498	Mir5615-2	Gm23367|mir-5615-2|mmu-mir-5615-2	microRNA 5615-2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-73591154-2	chr16	73591054	73591254	+	657.916626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	750913.0	NR_030464	751561.0		NR_030464	ENSMUSG00000104758	Mir691	Mirn691|mir-691|mmu-mir-691	microRNA 691	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-23983135-1	chr18	23983035	23983235	+	546.0	f1_balb.idr	Intergenic	B3|SINE|B2	-6499.0	NM_011755	22694.0	Mm.290596	NM_011755	ENSMUSG00000063281	Zfp35	Zfp-35|Znf271|mszf13|mszf20-1|mszf28|mszf68	zinc finger protein 35	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-56611970-4	chr13	56611875	56612075	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155548, intron 1 of 16)	intron (NR_155548, intron 1 of 16)	2389.0	NR_155548	21810.0	Mm.14455	NM_009369	ENSMUSG00000035493	Tgfbi	68kDa|AI181842|AI747162|Beta-ig|big-h3	transforming growth factor, beta induced	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-69179378-4	chr17	69179276	69179476	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355736, intron 1 of 21)	CT-rich|Low_complexity|Low_complexity	20020.0	NM_001355735	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-130314296-4	chr10	130314172	130314372	+	902.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8580.0	NM_183264	67596.0	Mm.131264	NM_183264	ENSMUSG00000034833	Tespa1	5830405N20Rik|A430001F24Rik|AI450549	thymocyte expressed, positive selection associated 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-22817530-3	chr14	22817448	22817648	+	937.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028275, intron 5 of 6)	intron (NM_028275, intron 5 of 6)	-274750.0	NR_046307	74896.0	Mm.444661	NR_046307	ENSMUSG00000114412	4930405A10Rik	4930456G20Rik	RIKEN cDNA 4930405A10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98836808-4	chr11	98836720	98836920	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080925)	promoter-TSS (NM_001080925)	35.0	NM_001080925	268480.0	Mm.340766	NM_001080925	ENSMUSG00000038020	Rapgefl1	B230105J10	Rap guanine nucleotide exchange factor (GEF)-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-148085365-4	chr4	148085285	148085485	+	894.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301281, intron 1 of 4)	intron (NM_001301281, intron 1 of 4)	2679.0	NM_009642	11610.0	Mm.46247	NM_009642	ENSMUSG00000029007	Agtrap	3300002E14Rik|AT1R|Atrap|D4Wsu124e	angiotensin II, type I receptor-associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165408014-4	chr2	165407916	165408116	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054055, intron 12 of 12)	intron (NM_054055, intron 12 of 12)	-7622.0	NM_029021	74614.0	Mm.72179	NM_029021	ENSMUSG00000027670	Ocstamp	4833422F24Rik|OC-STAMP	osteoclast stimulatory transmembrane protein	protein-coding	1.98691043022964	2.54824119070796	1.76891494163938	1.11882651714129	2.00450085379147	2.56824093524572	1.78321873232419	1.12274057187857	0.0402617537914266	0.971096314857149	0.998431161219273
Merged-chr2-122349104-2	chr2	122349006	122349206	+	978.5	f0_c57.idr|f1_c57bl6.idr	3' UTR (NM_001013829, exon 6 of 6)	3' UTR (NM_001013829, exon 6 of 6)	19812.0	NM_001013829	435684.0	Mm.458215	NM_001013829	ENSMUSG00000033256	Shf	-	Src homology 2 domain containing F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-130690069-2	chr3	130689969	130690169	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19375.0	NM_025509	66357.0	Mm.300697	NM_025509	ENSMUSG00000041084	Ostc	2310008M10Rik|5730557H03Rik	oligosaccharyltransferase complex subunit (non-catalytic)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-14064402-2	chr13	14064302	14064502	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001331176)	promoter-TSS (NM_001331176)	618.0	NM_198122	94246.0	Mm.439784	NM_194262	ENSMUSG00000039219	Arid4b	BCAA|BRCAA1|RBBP1L1|Rbp1l1|SAP180	AT rich interactive domain 4B (RBP1-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-59584585-2	chr13	59584485	59584685	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030153)	promoter-TSS (NM_030153)	638.0	NR_045633	319469.0	Mm.437992	NR_045633	ENSMUSG00000021557	A230056J06Rik	-	RIKEN cDNA A230056J06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-51560751-4	chr3	51560633	51560833	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080793)	promoter-TSS (NM_080793)	90.0	NM_080793	73251.0	Mm.192111	NM_080793	ENSMUSG00000037111	Setd7	1600028F23Rik|H3K4MT|KMT7|Set7|Set7/9|mKIAA1717	SET domain containing (lysine methyltransferase) 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-87485443-2	chr4	87485343	87485543	+	689.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-254903.0	NM_172426	76376.0	Mm.490487	NM_172426	ENSMUSG00000037996	Slc24a2	2810021B17Rik|6330417K15Rik|AI847460|Nckx2	solute carrier family 24 (sodium/potassium/calcium exchanger), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-121265577-3	chr9	121265475	121265675	+	990.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177589, intron 4 of 36)	intron (NM_177589, intron 4 of 36)	11597.0	NM_177589	209012.0	Mm.371804	NM_177589	ENSMUSG00000040936	Ulk4	4932415A06Rik|A730098P15	unc-51-like kinase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-72995408-2	chr16	72995308	72995508	+	603.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019413, intron 19 of 28)	intron (NM_019413, intron 19 of 28)	332259.0	NM_019413	19876.0	Mm.310772	NM_019413	ENSMUSG00000022883	Robo1	AW494633|AW742721|DUTT1|Gm310	roundabout guidance receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-26360143-4	chr2	26360050	26360250	+	955.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001037747)	promoter-TSS (NM_001037747)	-603.0	NM_001037747	332579.0	Mm.330064	NM_001037747	ENSMUSG00000026928	Card9	Gm782	caspase recruitment domain family, member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-99563615-4	chr12	99563517	99563717	+	989.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_136760)	promoter-TSS (NR_136760)	-224.0	NR_136760	102639404.0	Mm.396324	NR_136760	ENSMUSG00000097917	Gm26839	-	predicted gene, 26839	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-30172210-3	chr5	30172108	30172308	+	698.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145558, intron 6 of 15)	intron (NM_145558, intron 6 of 15)	1469.0	NR_035486	100316709.0		NR_035486	ENSMUSG00000088113	Mir1960	mir-1960|mmu-mir-1960	microRNA 1960	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-55754048-4	chr16	55753960	55754160	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	68078.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-120054329-4	chr4	120054240	120054440	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010657, intron 2 of 8)	intron (NM_010657, intron 2 of 8)	-106866.0	NM_007902	13615.0	Mm.284855	NM_007902	ENSMUSG00000028635	Edn2	ET-2|PPET2|VIC	endothelin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-53348577-4	chr10	53348540	53348740	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001204983, exon 3 of 13)	exon (NM_001204983, exon 3 of 13)	10954.0	NM_001141927	18821.0	Mm.34145	NM_023129	ENSMUSG00000038583	Pln	Plb	phospholamban	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-31278570-2	chr15	31278470	31278670	+	669.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54185.0	NM_146057	223453.0	Mm.222867	NM_146057	ENSMUSG00000039168	Dap	4921531N22Rik|AI789753|AU040360	death-associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-125273820-3	chr10	125273747	125273947	+	864.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358496, intron 3 of 5)	intron (NM_001358496, intron 3 of 5)	34969.0	NM_001358915	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-17293015-3	chr16	17292920	17293120	+	641.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001983, intron 41 of 54)	intron (NM_001001983, intron 41 of 54)	16720.0	NM_177473	224019.0	Mm.246388	NM_177473	ENSMUSG00000055692	Tmem191c	4933405M22Rik|D16Bwg1494e|MNCb-4137	transmembrane protein 191C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-56621806-2	chr18	56621706	56621906	+	914.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33458.0	NM_026099	67343.0	Mm.87057	NM_026099	ENSMUSG00000032900	Tex43	1700065I17Rik|Tseg7	testis expressed 43	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-45337140-4	chr8	45337028	45337228	+	814.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_153535, exon 14 of 14)	3' UTR (NM_153535, exon 14 of 14)	-3932.0	NM_133969	102294.0	Mm.245297	NM_133969	ENSMUSG00000079057	Cyp4v3	AU043077|AW111961|Cyp4v2	cytochrome P450, family 4, subfamily v, polypeptide 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-44123529-4	chr16	44123430	44123630	+	819.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007508, intron 1 of 14)	intron (NM_007508, intron 1 of 14)	15729.0	NM_001358203	11964.0	Mm.217787	NM_007508	ENSMUSG00000052459	Atp6v1a	AI647066|Atp6a1|Atp6a2|Atp6v1a1|VA68|VPP2	ATPase, H+ transporting, lysosomal V1 subunit A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44086001-3	chr9	44085877	44086077	+	874.638855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198091, intron 1 of 11)	intron (NM_198091, intron 1 of 11)	1057.0	NM_198091	53376.0	Mm.272770	NM_016808	ENSMUSG00000032010	Usp2	B930035K21Rik|Ubp41	ubiquitin specific peptidase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-10200544-2	chr17	10200444	10200644	+	833.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	118817.0	NM_021881	19317.0	Mm.130694	NM_021881	ENSMUSG00000062078	Qk	1110003F05Rik|1500005P18|QkI|l(17)-1Wis|l17Wis1	quaking	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117959179-2	chr11	117959079	117959279	+	826.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10187.0	NM_007707	12702.0	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-57422281-4	chr16	57422202	57422402	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	69025.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	4.40995068772056	3.50147225546334	4.3640738133852	3.67450676550879	2.26089808185299	3.32008245101736	3.40814012405163	2.86268017522528	-1.54834461499063	0.00664819163156498	0.0821868643179703
Merged-chr7-81184289-2	chr7	81184189	81184389	+	623.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	-29515.0	NM_008803	18584.0	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64999334-3	chr5	64999226	64999426	+	840.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026667, intron 3 of 13)	intron (NM_026667, intron 3 of 13)	29008.0	NR_030577	100124451.0		NR_030577	ENSMUSG00000077042	Mir574	Mirn574|mir-574|mmu-mir-574	microRNA 574	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-116587806-4	chr8	116587716	116587916	+	993.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029441, intron 4 of 6)	intron (NM_029441, intron 4 of 6)	82801.0	NM_029297	75465.0	Mm.23114	NM_029297	ENSMUSG00000034467	Dynlrb2	1700009A04Rik|DNLC2B|Dncl2b	dynein light chain roadblock-type 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135965456-2	chr4	135965356	135965556	+	757.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001356493, exon 2 of 11)	exon (NM_001356493, exon 2 of 11)	1731.0	NM_001356493	74246.0	Mm.247946	NM_178389	ENSMUSG00000028671	Gale	2310002A12Rik|AI323962	galactose-4-epimerase, UDP	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-17891792-4	chr16	17891713	17891913	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010048)	promoter-TSS (NM_010048)	-85.0	NM_001109750	13356.0	Mm.254515	NM_010048	ENSMUSG00000003166	Dgcr2	9930034O06Rik|DGS-C|Dgsc|Idd|Lan|Sez12|mKIAA0163	DiGeorge syndrome critical region gene 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44234211-4	chr9	44234124	44234324	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007619)	promoter-TSS (NM_007619)	-178.0	NM_007619	12402.0	Mm.266871	NM_007619	ENSMUSG00000034342	Cbl	4732447J05Rik|Cbl-2|c-Cbl|cbl	Casitas B-lineage lymphoma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56710676-2	chr17	56710576	56710776	+	885.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_027933, exon 15 of 16)	exon (NM_027933, exon 15 of 16)	6245.0	NM_178926	106639.0	Mm.37290	NM_178926	ENSMUSG00000054723	Vmac	AI662250	vimentin-type intermediate filament associated coiled-coil protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115182553-4	chr11	115182517	115182717	+	887.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_025400)	TTS (NM_025400)	4699.0	NM_025400	66176.0	Mm.86823	NM_025400	ENSMUSG00000015542	Nat9	1110028N05Rik	N-acetyltransferase 9 (GCN5-related, putative)	protein-coding	2.97372014878549	2.68779719746333	3.22368223434135	2.21284094740364	3.21039629966305	3.27164892984809	3.59937052876962	1.81505139036406	0.520702551537531	0.478951316591705	0.928092227925527
Merged-chr2-93462528-4	chr2	93462411	93462611	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271461)	promoter-TSS (NM_001271461)	-9.0	NM_007656	12521.0	Mm.4261	NM_007656	ENSMUSG00000027215	Cd82	AA682076|AL023070|C33|IA4|Kai1|Tspan27	CD82 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3706969-2	chr19	3706869	3707069	+	972.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1324.0	NM_001358256	72056.0	Mm.23780	NM_028077	ENSMUSG00000035372	1810055G02Rik	AI256204	RIKEN cDNA 1810055G02 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-72490047-4	chr11	72489947	72490147	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153060)	promoter-TSS (NM_153060)	-127.0	NM_153060	216892.0	Mm.212812	NM_153060	ENSMUSG00000040447	Spns2	-	spinster homolog 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-108634307-2	chr12	108634207	108634407	+	941.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163395, intron 1 of 12)	intron (NM_001163395, intron 1 of 12)	-1446.0	NM_001163396	14026.0	Mm.238841	NM_007965	ENSMUSG00000021262	Evl	AI528774|b2b2600Clo	Ena-vasodilator stimulated phosphoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95738106-1	chr3	95738006	95738206	+	1000.0	f1_balb.idr	exon (NM_001252653, exon 3 of 11)	exon (NM_001252653, exon 3 of 11)	1463.0	NM_007899	13601.0	Mm.3433	NM_007899	ENSMUSG00000028108	Ecm1	AI663821|p85	extracellular matrix protein 1	protein-coding	0.385174572017747	-0.140614343592193	-0.14513051219765	-0.148606416655532	0.21468270468319	0.344104572327473	-0.144135505650749	-0.147999710842805	0.578387078345456	0.807447092196648	1
Merged-chr15-53373966-4	chr15	53373859	53374059	+	988.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-27776.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-27211175-2	chr3	27211075	27211275	+	551.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 1 of 4)	intron (NM_178772, intron 1 of 4)	28171.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-67114927-1	chr17	67114827	67115027	+	768.0	f0_balb.idr	intron (NM_001357625, intron 2 of 32)	intron (NM_001357625, intron 2 of 32)	-88692.0	NR_049205	100885844.0		NR_049205	ENSMUSG00000093508	Mir5709	Gm22041|mir-5709|mmu-mir-5709	microRNA 5709	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-103911214-4	chr5	103911119	103911319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359986)	promoter-TSS (NM_001359986)	40.0	NM_001359987	246293.0	Mm.179871	NM_178741	ENSMUSG00000029312	Klhl8	2310001P09Rik|D5Ertd431e	kelch-like 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-180893357-2	chr2	180893257	180893457	+	786.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029538)	promoter-TSS (NR_029538)	-683.0	NR_029538	723951.0		NR_029538	ENSMUSG00000065454	Mir124a-3	Mirn124a-3|mir-124-3|mir-124a-3	microRNA 124a-3	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-114838370-2	chr3	114838270	114838470	+	827.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	-65708.0	NM_153458	229759.0	Mm.54183	NM_153157	ENSMUSG00000027965	Olfm3	B230206G02Rik	olfactomedin 3	protein-coding	-1.69986312423686	-1.81314243252593	-1.82225744210362	-1.82974478236248	-1.84116796638235	-1.66774645889968	-1.82019400373055	-1.82840455203593	0.0376840119903864	0.991491645451152	1
Merged-chr10-96619235-2	chr10	96619135	96619335	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007569, exon 2 of 2)	3' UTR (NM_007569, exon 2 of 2)	2234.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24172415-4	chr17	24172327	24172527	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2749.0	NM_001361531	11984.0	Mm.30155	NM_009729	ENSMUSG00000024121	Atp6v0c	Atp6c|Atp6c2|Atp6l|Atpl|Atpl-rs1|PL16|VATL|Vma3	ATPase, H+ transporting, lysosomal V0 subunit C	protein-coding	4.51058171035571	4.4136722110941	4.21991145559488	4.45187609770008	4.31833707511897	3.39174860815394	3.99871120531823	3.56857417875541	-0.701940879926403	0.107481738705273	0.512817829130118
Merged-chr10-81184370-2	chr10	81184270	81184470	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001190473, intron 2 of 8)	PB1D9|SINE|Alu	452.0	NM_007828	13144.0	Mm.10294	NM_007828	ENSMUSG00000034974	Dapk3	ZIPK|dlk	death-associated protein kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-75887378-4	chr16	75887259	75887459	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023380, intron 2 of 7)	MTE2b|LTR|ERVL-MaLR	21907.0	NM_023380	67742.0	Mm.131406	NM_023380	ENSMUSG00000022876	Samsn1	4930571B16Rik|930571B16Rik|Hacs1|SLy2	SAM domain, SH3 domain and nuclear localization signals, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-122833306-2	chr4	122833206	122833406	+	613.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2921.0	NM_008917	19063.0	Mm.277719	NM_008917	ENSMUSG00000028657	Ppt1	9530043G02Rik|AA960502|C77813|CLN1|D4Ertd184e|INCL|PPT	palmitoyl-protein thioesterase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-130276056-2	chr2	130276019	130276219	+	758.25	f1_balb.idr|f1_c57bl6.idr	TTS (NR_028547)	TTS (NR_028547)	604.0	NR_028547	100217452.0		NR_028547	ENSMUSG00000080610	Snord110	MBII-55	small nucleolar RNA, C/D box 110	snoRNA	0.657955270069868	2.58618231777023	0.711565583022309	1.49170898699497	1.26415386163159	0.741139455482851	0.717010419407199	2.13455631845482	-0.749071232547315	0.757612849647624	0.998431161219273
Merged-chr18-60523938-4	chr18	60523842	60524042	+	991.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2212.0	NM_026302	67665.0	Mm.272801	NM_026302	ENSMUSG00000024603	Dctn4	1110001K06Rik|4930547K17Rik|C130039E17Rik|p62	dynactin 4	protein-coding	4.18134549752411	4.65797928451677	4.23852293266236	5.06930558624611	4.79237024719289	4.83176969867735	4.20780061409449	3.53790740377376	-0.186668630281497	0.667175746948143	0.992612068328693
Merged-chr17-5595269-2	chr17	5595169	5595369	+	567.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	102669.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-73931485-2	chr12	73931385	73931585	+	559.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001313919, intron 5 of 14)	B2_Mm2|SINE|B2	23618.0	NM_001313919	15251.0	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-103346301-2	chr12	103346201	103346401	+	746.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023049, intron 1 of 9)	(TCCA)n|Simple_repeat|Simple_repeat	9700.0	NM_023049	65256.0	Mm.27159	NM_023049	ENSMUSG00000021200	Asb2	1110008E15Rik	ankyrin repeat and SOCS box-containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30591081-4	chr2	30590977	30591177	+	988.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J2|LTR|ERVL-MaLR	-3967.0	NM_030137	78617.0	Mm.40413	NM_030137	ENSMUSG00000047363	Cstad	9530039B02Rik	CSA-conditional, T cell activation-dependent protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-37715008-2	chr13	37714908	37715108	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-111030.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-91188136-3	chr10	91188030	91188230	+	959.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16511.0	NM_001080130	21917.0	Mm.159684	NM_011605	ENSMUSG00000019961	Tmpo	5630400D24Rik|AI195756|AI606875|AW214352|AW547477|LAP2|TP	thymopoietin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-136395820-1	chr5	136395720	136395920	+	723.0	f1_balb.idr	intron (NM_001291238, intron 3 of 22)	intron (NM_001291238, intron 3 of 22)	-20017.0	NR_030500	723975.0		NR_030500	ENSMUSG00000106479	Mir721	Mirn721|miRY|mir-721|mmu-mir-721	microRNA 721	ncRNA	0.716701979571875	0.764761446741972	1.85787179137341	1.12045341516716	1.70178784183472	1.76236754466525	0.752781361630532	0.950622101919091	0.531587147616222	0.716301242076995	0.998431161219273
Merged-chr1-93343606-4	chr1	93343518	93343718	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023200)	promoter-TSS (NM_023200)	-27.0	NM_023200	66385.0	Mm.88704	NM_023200	ENSMUSG00000026275	Ppp1r7	2310014J01Rik|SDS22	protein phosphatase 1, regulatory (inhibitor) subunit 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-23045111-2	chr19	23045011	23045211	+	938.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-96115.0	NM_010638	16601.0	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|Gm9971	Kruppel-like factor 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70051575-2	chr11	70051475	70051675	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2549.0	NM_001291131	11889.0	Mm.6559	NM_009714	ENSMUSG00000020884	Asgr1	ASGPR1|Asgr|Asgr-1|HL-1	asialoglycoprotein receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-107845061-3	chr13	107844961	107845161	+	674.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 2 of 14)	intron (NM_145456, intron 2 of 14)	45003.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-151535645-2	chr2	151535545	151535745	+	893.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	-6838.0	NR_126058	14225.0	Mm.278458	NM_008019	ENSMUSG00000032966	Fkbp1a	FKBP12|Fkbp|Fkbp1	FK506 binding protein 1a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-6624748-4	chr1	6624633	6624833	+	955.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001244693, intron 2 of 22)	MTD|LTR|ERVL-MaLR	-105318.0	NR_045189	240690.0	Mm.234612	NM_173868	ENSMUSG00000033740	St18	AV348974|Myt3|NZF-3|Nzf3|mKIAA0535	suppression of tumorigenicity 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-6677694-2	chr15	6677594	6677794	+	577.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus1|LINE|L1	-23391.0	NR_155272	102632231.0	Mm.444780	NR_155272		LOC102632231	-	uncharacterized LOC102632231	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-64011951-4	chr7	64011835	64012035	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73020.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-138486921-2	chr3	138486844	138487044	+	812.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175224, intron 1 of 10)	intron (NM_175224, intron 1 of 10)	2438.0	NM_175224	75624.0	Mm.26833	NM_175224	ENSMUSG00000005813	Metap1	1700029C17Rik|AW047992|mKIAA0094	methionyl aminopeptidase 1	protein-coding	1.59773951449761	1.92683758456399	0.746861519807345	0.73495092190675	1.42921799100655	0.765403185913566	0.750232069901452	1.62070462025723	-0.576136157271071	0.707175860733753	0.998431161219273
Merged-chr5-106696717-5	chr5	106696636	106696836	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026856)	promoter-TSS (NM_026856)	94.0	NM_026856	52397.0	Mm.249474	NM_026856	ENSMUSG00000049606	Zfp644	1110068L01Rik|AA408882|BM-005|D5Ertd689e|Zep-2	zinc finger protein 644	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-51768885-4	chr12	51768752	51768952	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_144788, exon 25 of 43)	exon (NM_144788, exon 25 of 43)	60684.0	NM_144788	207304.0	Mm.249391	NM_144788	ENSMUSG00000035247	Hectd1	A630086P08Rik|AI844876|b2b327Clo|opm	HECT domain E3 ubiquitin protein ligase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32775673-4	chr2	32775549	32775749	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290567)	promoter-TSS (NM_001290567)	-16.0	NM_001290563	338348.0	Mm.475130	NM_177384	ENSMUSG00000039021	Ttc16	1200002K10Rik	tetratricopeptide repeat domain 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152905673-2	chr1	152905573	152905773	+	597.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-3027.0	NM_001005507	226517.0	Mm.270775	NM_001005507	ENSMUSG00000042772	Smg7	9430023P16Rik|mKIAA0250	Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-36064776-1	chr17	36064676	36064876	+	688.400024	f0_balb.idr	Intergenic	Intergenic	-6405.0	NM_001199967	100529082.0	Mm.484641	NM_001199967	ENSMUSG00000079492	Gm11127	-	predicted gene 11127	protein-coding	0.386816624296549	0.495574014126149	0.12183946469977	0.116826941183955	0.262855011593586	0.98532447010599	0.311340520160312	0.117703712698912	1.20802604110218	0.525127208252531	1
Merged-chr2-11300568-4	chr2	11300470	11300670	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008859, exon 18 of 18)	3' UTR (NM_008859, exon 18 of 18)	-38919.0	NR_040369	100503147.0	Mm.91961	NR_040369	ENSMUSG00000086006	Gm13293	-	predicted gene 13293	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-66150889-1	chr14	66150789	66150989	+	548.0	f1_balb.idr	intron (NM_144803, intron 6 of 6)	intron (NM_144803, intron 6 of 6)	9929.0	NM_144803	110902.0	Mm.57350	NM_144803	ENSMUSG00000022041	Chrna2	Acra-2|Acra2|BC011490	cholinergic receptor, nicotinic, alpha polypeptide 2 (neuronal)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28769253-2	chr7	28769153	28769353	+	982.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_022432, intron 2 of 15)	L1ME3G|LINE|L1	2501.0	NM_001122766	64383.0	Mm.272443	NM_022432	ENSMUSG00000015149	Sirt2	5730427M03Rik|SIR2L2|Sir2l	sirtuin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-88035680-3	chr15	88035598	88035798	+	678.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-239755.0	NR_105817	102465209.0		NR_105817	ENSMUSG00000098938	Mir6393	Gm27424|mmu-mir-6393	microRNA 6393	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97282703-1	chr6	97282603	97282803	+	697.666687	f1_balb.idr	Intergenic	Intergenic	-29923.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	0.62810313266928	1.48349186793216	0.464246546037599	1.13246283348835	0.437974501679944	1.69765292693495	0.467274941121178	0.455407351348438	-0.28510300416841	0.866909621393155	0.998431161219273
Merged-chr12-3291185-4	chr12	3291094	3291294	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016676, intron 1 of 5)	ORR1B1|LTR|ERVL-MaLR	18775.0	NM_016676	19325.0	Mm.378993	NM_016676	ENSMUSG00000020671	Rab10	AW107754	RAB10, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-83771072-3	chr12	83770972	83771172	+	787.388855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205343, intron 3 of 27)	intron (NM_001205343, intron 3 of 27)	7438.0	NM_130887	170721.0	Mm.133443	NM_130887	ENSMUSG00000021223	Papln	E030033C16Rik	papilin, proteoglycan-like sulfated glycoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80809826-2	chr7	80809726	80809926	+	787.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6495.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-23543964-2	chr13	23543864	23544064	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013548)	promoter-TSS (NM_013548)	-88.0	NM_013548	260423.0	Mm.221389	NM_013548	ENSMUSG00000100210	Hist1h3f	H3.2-221|Hist1	histone cluster 1, H3f	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-19697195-4	chr4	19697094	19697294	+	862.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_074090, intron 1 of 24)	intron (NR_074090, intron 1 of 24)	11810.0	NM_177327	107568.0	Mm.78312	NM_177327	ENSMUSG00000041058	Wwp1	8030445B08Rik|AIP5|SDRP1|Tiul1	WW domain containing E3 ubiquitin protein ligase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-117473656-1	chr4	117473556	117473756	+	665.0	f0_balb.idr	intron (NM_025739, intron 2 of 14)	intron (NM_025739, intron 2 of 14)	23396.0	NM_025739	66743.0	Mm.318331	NM_025739	ENSMUSG00000028677	Rnf220	4732477A13|4931406I20Rik|5730503K05Rik|AV302541	ring finger protein 220	protein-coding	0.970361170068154	1.10162780457072	0.67552171472218	1.29075902222035	1.89828072562038	0.922217163491341	1.06916495852618	0.667161500530283	0.87064594333101	0.544392367826253	0.955840500234695
Merged-chr9-118592520-2	chr9	118592420	118592620	+	842.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-14189.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-117120853-2	chr5	117120753	117120953	+	977.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199685, intron 1 of 20)	intron (NM_001199685, intron 1 of 20)	724.0	NM_001199685	330177.0	Mm.24343	NM_183306	ENSMUSG00000061288	Taok3	2900006A08Rik|A130052D22|A430105I05Rik	TAO kinase 3	protein-coding	-1.07176634177145	-0.860044876758115	-1.19859026176705	-1.20715505099092	-1.06809055424203	-1.18590407104766	-1.19622988890689	-1.20562195781478	-1.35404538817468	0.660809919558045	1
Merged-chr14-79552589-2	chr14	79552489	79552689	+	567.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007920, intron 2 of 8)	intron (NM_007920, intron 2 of 8)	-35071.0	NM_026474	67955.0	Mm.18972	NM_026474	ENSMUSG00000022024	Sugt1	2410174K12Rik|SGT1	SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-70862604-3	chr9	70862468	70862668	+	867.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001324473, intron 1 of 8)	intron (NM_001324473, intron 1 of 8)	72240.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-12237089-4	chr18	12236992	12237192	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008720)	promoter-TSS (NM_008720)	-706.0	NM_008720	18145.0	Mm.3484	NM_008720	ENSMUSG00000024413	Npc1	A430089E03Rik|C85354|D18Ertd139e|D18Ertd723e|lcsd|nmf164|spm	NPC intracellular cholesterol transporter 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-34101207-4	chr8	34101141	34101341	+	788.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293759, intron 2 of 7)	intron (NM_001293759, intron 2 of 7)	6573.0	NM_001293758	22428.0	Mm.150373	NM_011722	ENSMUSG00000031516	Dctn6	AU044699|WS-3|p27	dynactin 6	protein-coding	2.36675599589539	2.74944411125378	1.17608496994733	2.13823402714983	1.67699190387191	2.04182989128915	1.18247599180129	2.03558114232008	-1.13458720483206	0.28780558683004	0.793449317735943
Merged-chr1-65091775-2	chr1	65091675	65091875	+	547.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9485.0	NM_144761	12965.0	Mm.440053	NM_144761	ENSMUSG00000073658	Crygb	Cryg-3|DGcry-3|Nop	crystallin, gamma B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-44044844-2	chr1	44044744	44044944	+	672.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TGAG)n|Simple_repeat|Simple_repeat	-24838.0	NM_001013799	433294.0	Mm.123621	NM_001013799	ENSMUSG00000047343	Mettl21c	A530098C11Rik	methyltransferase like 21C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-76077241-2	chr14	76077141	76077341	+	673.916626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33574.0	NM_026177	67467.0	Mm.260767	NM_026177	ENSMUSG00000022008	Gpalpp1	1200011I18Rik|Kiaa1704	GPALPP motifs containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-95869680-4	chr11	95869547	95869747	+	904.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008081, intron 7 of 10)	intron (NM_008081, intron 7 of 10)	10830.0	NR_045187	73906.0	Mm.399894	NR_045187	ENSMUSG00000086015	4833417C18Rik	-	RIKEN cDNA 4833417C18 gene	ncRNA	-2.18292257394068	-2.15545247547656	-2.03304972317742	-2.17058342868585	-2.18099422382073	-2.1536522739386	-2.16187909550322	-2.16936197735154	-0.683654500252594	0.846597994014493	1
Merged-chr19-43931113-3	chr19	43930997	43931197	+	919.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028029, intron 1 of 15)	intron (NM_028029, intron 1 of 15)	9101.0	NM_028029	71972.0	Mm.159024	NM_028029	ENSMUSG00000025195	Dnmbp	2410003L07Rik|2410003M15Rik|TUBA	dynamin binding protein	protein-coding	-0.0651144428453042	-0.30035280333476	-0.304090914511793	-0.306961034650315	-0.0590328797532853	-0.299507363778643	0.237938028111599	-0.152045152217528	1.92289352075347	0.415564719551319	1
Merged-chr2-45085814-4	chr2	45085697	45085897	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355291, intron 2 of 9)	intron (NM_001355291, intron 2 of 9)	24480.0	NM_001289521	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-67055861-3	chr17	67055758	67055958	+	909.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 5 of 32)	intron (NM_001357625, intron 5 of 32)	-29623.0	NR_049205	100885844.0		NR_049205	ENSMUSG00000093508	Mir5709	Gm22041|mir-5709|mmu-mir-5709	microRNA 5709	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-32147679-3	chr4	32147582	32147782	+	976.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	183575.0	NM_172688	26409.0	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding	1.38893973634913	1.8504693713325	2.31534682477093	1.18982092958236	2.57344405438403	4.0188857471574	2.33619925793417	2.71847801943385	2.72978500142733	0.00281431799682178	0.0432899837511125
Merged-chr11-117881122-4	chr11	117881029	117881229	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7603.0	NM_027919	71776.0	Mm.3200	NM_027919	ENSMUSG00000017713	Tha1	1300017K07Rik|GLY1	threonine aldolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-103146592-4	chr11	103146512	103146712	+	927.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13253.0	NM_027658	71059.0	Mm.273871	NM_027658	ENSMUSG00000043372	Hexim2	4933402L21Rik	hexamethylene bis-acetamide inducible 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-31155558-4	chr7	31155456	31155656	+	902.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4385.0	NR_153431	52857.0	Mm.27366	NM_027898	ENSMUSG00000001248	Gramd1a	1300003M23Rik|AI415002|AW547240|D7Bwg0611e	GRAM domain containing 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4019388-4	chr19	4019302	4019502	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6647.0	NM_133666	17995.0	Mm.29842	NM_133666	ENSMUSG00000037916	Ndufv1	CI-51kD	NADH dehydrogenase (ubiquinone) flavoprotein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-42655228-2	chr19	42655128	42655328	+	659.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42422.0	NM_053083	67573.0	Mm.178767	NM_053083	ENSMUSG00000025185	Loxl4	4833426I20Rik|Loxc	lysyl oxidase-like 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-33320239-4	chr14	33320086	33320286	+	963.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153800, intron 4 of 10)	CpG	90838.0	NM_001310452	26419.0	Mm.21495	NM_016700	ENSMUSG00000021936	Mapk8	AI849689|JNK|JNK1|Prkm8|SAPK1	mitogen-activated protein kinase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-15808623-4	chr17	15808525	15808725	+	896.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178615, intron 2 of 2)	intron (NM_178615, intron 2 of 2)	17961.0	NM_178615	68799.0	Mm.293466	NM_178615	ENSMUSG00000048027	Rgmb	1110059F19Rik|DRAGON	repulsive guidance molecule family member B	protein-coding	1.47524885122753	2.25402458316996	1.24876317997172	1.40110711828162	1.61375612501074	2.27243663734578	1.0198563575255	1.56429308128345	0.110115149092379	0.923706410916246	0.998431161219273
Merged-chr10-52426724-3	chr10	52426641	52426841	+	817.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030250, intron 1 of 4)	intron (NM_030250, intron 1 of 4)	9194.0	NM_030250	52014.0	Mm.199964	NM_030250	ENSMUSG00000023068	Nus1	1600027K07Rik|AU019165|AW538011|BC003223|D10Ertd438e	NUS1 dehydrodolichyl diphosphate synthase subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-135514309-3	chr1	135514213	135514413	+	895.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173437, intron 3 of 28)	intron (NM_173437, intron 3 of 28)	-59630.0	NR_049188	100885827.0		NR_049188	ENSMUSG00000093515	Mir1231	Gm23720|mir-1231|mmu-mir-1231	microRNA 1231	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-11832999-4	chr18	11832893	11833093	+	866.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045421, intron 1 of 3)	(T)n|Simple_repeat|Simple_repeat	-6281.0	NM_001146287	63955.0	Mm.40717	NM_022021	ENSMUSG00000040957	Cables1	Cables|ik3-1	CDK5 and Abl enzyme substrate 1	protein-coding	-1.84333625941563	-1.81316502774353	-1.82228905723243	-1.68622116930682	-1.84121829473887	-1.81118781249149	-1.67666093954108	-1.82844225014088	0.037684011990387	0.991491645451152	1
Merged-chr9-42138582-3	chr9	42138517	42138717	+	888.955566	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14320.0	NM_011436	20660.0	Mm.121920	NM_011436	ENSMUSG00000049313	Sorl1	2900010L19Rik|AI596264|AW261561|LR11|SorLA|gp250|mSorLA	sortilin-related receptor, LDLR class A repeats-containing	protein-coding	0.0770795370637722	0.471613598803027	0.795268711535816	0.0856477567462257	0.844772616678055	0.0988905619485936	0.0922437232946288	0.0865459142001145	-0.371461646879811	0.863641141638277	1
Merged-chr8-95255033-4	chr8	95254926	95255126	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195413, intron 25 of 32)	intron (NM_001195413, intron 25 of 32)	51559.0	NM_145601	333329.0	Mm.484049	NM_145601	ENSMUSG00000031789	Cngb1	Cngb1b|Garp2|Gm1959	cyclic nucleotide gated channel beta 1	protein-coding	3.57322598585114	3.71302846416174	2.92386819630327	3.75493415926106	2.70874112199991	3.57862177929707	3.069248124366	3.71308066213205	-0.324963116767427	0.57396702653813	0.964527909969019
Merged-chr10-127637590-2	chr10	127637412	127637612	+	707.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5474.0	NM_009284	20852.0	Mm.121721	NM_009284	ENSMUSG00000002147	Stat6	-	signal transducer and activator of transcription 6	protein-coding	0.710668181068694	1.2829722546861	0.759823505073	1.18966737169715	0.71543017721484	1.48270355973575	2.55006709800558	1.86442727562144	2.68882349479484	0.0503297789266713	0.326880198969073
Merged-chr6-22494111-4	chr6	22494019	22494219	+	946.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-138038.0	NM_138587	27999.0	Mm.490307	NM_138587	ENSMUSG00000029672	Fam3c	D6Wsu176e|Ilei	family with sequence similarity 3, member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-36796818-4	chr5	36796714	36796914	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026242)	promoter-TSS (NM_026242)	-60.0	NM_026242	67568.0	Mm.332336	NM_026242	ENSMUSG00000055302	Mrfap1	9130413I22Rik|AL022827|Pam14	Morf4 family associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-56638487-2	chr9	56638387	56638587	+	635.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_181074, intron 6 of 6)	intron (NM_181074, intron 6 of 6)	-2839.0	NM_001311076	235402.0	Mm.246605	NM_181074	ENSMUSG00000049556	Lingo1	4930471K13Rik|AV148400|LERN1|LINGO-1|Lrrn6a|UNQ201	leucine rich repeat and Ig domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-123481470-4	chr3	123481354	123481554	+	987.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008939, intron 4 of 10)	intron (NM_008939, intron 4 of 10)	26612.0	NR_028573	100306957.0	Mm.260791	NR_028573	ENSMUSG00000092730	Snora24	ACA24	small nucleolar RNA, H/ACA box 24	snoRNA	3.34660230696131	4.29530394455935	2.72026302064733	4.2930446714309	3.20654780195844	4.21019268362282	4.0789939654006	3.62844021339875	0.0167400497851726	0.976111918838889	0.998431161219273
Merged-chr16-33988556-4	chr16	33988452	33988652	+	814.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177357, intron 55 of 59)	intron (NM_177357, intron 55 of 59)	-21514.0	NM_009471	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-62326064-2	chr17	62325964	62326164	+	599.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC-int|LTR|ERVL-MaLR	555253.0	NM_207654	13640.0	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6234783-2	chr19	6234683	6234883	+	938.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_198168, exon 2 of 14)	exon (NM_198168, exon 2 of 14)	1057.0	NM_198168	225849.0	Mm.118076	NM_198168	ENSMUSG00000024777	Ppp2r5b	B'beta|BC026670	protein phosphatase 2, regulatory subunit B', beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-50809253-2	chr14	50809153	50809353	+	589.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009632, intron 1 of 15)	B3|SINE|B2	1337.0	NM_009632	11546.0	Mm.281482	NM_009632	ENSMUSG00000036023	Parp2	ADPRT-2|ARTD2|Adprt2|Adprtl2|Aspartl2|C78626|PARP-2|mPARP-2|pADPRT-2	poly (ADP-ribose) polymerase family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-25717741-2	chr15	25717641	25717841	+	558.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019472, intron 4 of 40)	intron (NM_019472, intron 4 of 40)	-35465.0	NM_001353142	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122280655-7	chr5	122280511	122280711	+	889.964294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3787.0	NM_177242	320717.0	Mm.489670	NM_177242	ENSMUSG00000038582	Pptc7	9130017A15Rik|AA672638|AI848390|TA-PP2C	PTC7 protein phosphatase homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-47004120-7	chr14	47004000	47004200	+	953.152405	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163433, intron 1 of 11)	intron (NM_001163433, intron 1 of 11)	2760.0	NM_001163433	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	3.93619059736055	3.65601651250762	3.53716226242789	3.36061591355669	3.72999132595481	3.07275831539803	3.3017385222622	2.8736027993873	-0.542157891322829	0.325655657646617	0.827782420413875
Merged-chr15-97166356-2	chr15	97166256	97166456	+	596.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_155278, intron 2 of 3)	intron (NR_155278, intron 2 of 3)	888.0	NR_155278	102635594.0	Mm.392594	NR_155278	ENSMUSG00000116295	Gm32885	-	predicted gene, 32885	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-87453264-2	chr11	87453164	87453364	+	653.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199293, intron 2 of 30)	intron (NM_001199293, intron 2 of 30)	25673.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-65582898-4	chr16	65582793	65582993	+	995.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR26_Mus|LTR|ERVK	-20196.0	NM_026879	68942.0	Mm.432944	NM_026879	ENSMUSG00000004843	Chmp2b	1190006E07Rik	charged multivesicular body protein 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-108668395-2	chr6	108668295	108668495	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7461.0	NR_104577	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-31079159-3	chr6	31079048	31079248	+	927.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16055.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-104245981-2	chr8	104245881	104246081	+	639.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045642, intron 2 of 8)	intron (NR_045642, intron 2 of 8)	2577.0	NR_045642	57813.0	Mm.183110	NM_021028	ENSMUSG00000035824	Tk2	AU024611|mt-TK	thymidine kinase 2, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-97800331-3	chr7	97800239	97800439	+	781.916687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357364, intron 1 of 14)	RMER15|LTR|ERVL	11798.0	NM_001357364	18479.0	Mm.260227	NM_011035	ENSMUSG00000030774	Pak1	AW045634|PAK-1|Paka	p21 (RAC1) activated kinase 1	protein-coding	1.38086008088243	1.0774829336833	2.4102396499336	2.25926564051743	1.54124029682375	2.02330681476394	1.82133125336944	1.03818407837809	-0.703918554592827	0.546584095817719	0.957458402445229
Merged-chr13-116985070-3	chr13	116984971	116985171	+	842.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081009, intron 3 of 26)	RMER16|LTR|ERVK	40445.0	NM_001081009	52552.0	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	1.68767858971685	1.37057828341958	0.754621426359383	1.40296789222246	0.724403866192649	1.01743938870333	0.758106260169016	1.96382551278357	-0.333272272965339	0.81947828814709	0.998431161219273
Merged-chr17-25869248-2	chr17	25869148	25869348	+	688.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026633)	promoter-TSS (NM_026633)	-510.0	NM_026633	68241.0	Mm.328870	NM_026633	ENSMUSG00000025732	Mcrip2	9530058B02Rik|Fam195a	MAPK regulated corepressor interacting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-104794635-4	chr13	104794542	104794742	+	972.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360094, intron 9 of 13)	intron (NM_001360094, intron 9 of 13)	22311.0	NM_026072	67285.0	Mm.235398	NM_026072	ENSMUSG00000021715	Cwc27	3110009E13Rik|NY-CO-10|Sdccag10	CWC27 spliceosome-associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5498380-2	chr19	5498272	5498472	+	722.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001362042, intron 3 of 11)	intron (NM_001362042, intron 3 of 11)	5415.0	NM_023781	75555.0	Mm.440432	NM_023781	ENSMUSG00000100937	1700020D05Rik	mage-g2	RIKEN cDNA 1700020D05 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-44520315-4	chr11	44520258	44520458	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166553, intron 1 of 5)	intron (NM_001166553, intron 1 of 5)	981.0	NM_001166553	74315.0	Mm.156771	NM_028862	ENSMUSG00000019189	Rnf145	3732413I11Rik|TMRF1	ring finger protein 145	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-22468323-4	chr9	22468221	22468421	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018739)	promoter-TSS (NM_018739)	35.0	NM_018739	55934.0	Mm.38235	NM_018739	ENSMUSG00000032239	Rp9	PAP-1|Rp9h	retinitis pigmentosa 9 (human)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28699679-2	chr17	28699579	28699779	+	655.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001168514, intron 2 of 12)	intron (NM_001168514, intron 2 of 12)	7111.0	NM_001357724	26416.0	Mm.311337	NM_011951	ENSMUSG00000053436	Mapk14	CSBP2|Crk1|Csbp1|Mxi2|PRKM14|PRKM15|p38|p38-alpha|p38MAPK|p38a|p38alpha	mitogen-activated protein kinase 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55763247-4	chr14	55763149	55763349	+	957.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_020490)	TTS (NM_020490)	1821.0	NM_020490	57260.0	Mm.159670	NM_020490	ENSMUSG00000040432	Ltb4r2	5830462O07Rik|BLT2|LTB4-R 2|LTB4-R-2|LTB4-R2	leukotriene B4 receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-120567641-4	chr2	120567564	120567764	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177793)	promoter-TSS (NM_001177793)	-7.0	NM_001177792	20619.0	Mm.245715	NM_009222	ENSMUSG00000027287	Snap23	23kDa|AA408749|SNAP-23|Sndt|Syndet	synaptosomal-associated protein 23	protein-coding	-0.192138951420912	-0.171026567405401	0.47609772207122	-0.183183962147142	-0.19079765004553	-0.169497709948121	0.883097886507608	-0.182249865450918	1.04796785553494	0.664078450047045	1
Merged-chr11-59529520-2	chr11	59529420	59529620	+	591.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12049.0	NM_001359638	216799.0	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-64263204-3	chr15	64263107	64263307	+	735.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 3 of 28)	intron (NM_001276461, intron 3 of 28)	49466.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-17724731-2	chr16	17724631	17724831	+	666.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TGG)n|Simple_repeat|Simple_repeat	-1784.0	NM_001040683	94112.0	Mm.208970	NM_033609	ENSMUSG00000012114	Med15	A230074L19Rik|AW536074|Pcqap|mPcqap	mediator complex subunit 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-35207707-2	chr2	35207607	35207807	+	803.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-6587.0	NM_026697	68365.0	Mm.198264	NM_026697	ENSMUSG00000026878	Rab14	0610030G24Rik|2810475J17Rik|A830021G03Rik|AI314285|AI649155|D030017L14Rik	RAB14, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-86513579-3	chr9	86513501	86513701	+	852.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177208, intron 16 of 38)	intron (NM_177208, intron 16 of 38)	46447.0	NM_177208	320615.0	Mm.245500	NM_177208	ENSMUSG00000034973	Dopey1	B130005I07Rik|BC035275|C130028L17|D9Ertd809e	dopey family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-90250461-2	chr9	90250361	90250561	+	598.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 1 of 12)	Lx8|LINE|L1	20308.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-71873999-4	chr7	71873912	71874112	+	866.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35683.0	NR_130995	78156.0	Mm.243818	NR_130995	ENSMUSG00000108669	4930441H08Rik	-	RIKEN cDNA 4930441H08 gene	ncRNA	4.64362054988516	4.59182585306872	5.57860587713537	3.76157333196245	5.59404669025483	5.55577510852953	5.5115918014827	4.33997024524681	0.639459736383249	0.124840009145671	0.553113157211875
Merged-chr16-90445593-4	chr16	90445495	90445695	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015755, intron 2 of 10)	intron (NM_015755, intron 2 of 10)	59198.0	NM_015755	26559.0	Mm.125874	NM_015755	ENSMUSG00000053414	Hunk	Bstk1|Mak-v	hormonally upregulated Neu-associated kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-180124853-3	chr2	180124750	180124950	+	913.755554	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144500, intron 1 of 13)	intron (NM_144500, intron 1 of 13)	5484.0	NM_144500	228983.0	Mm.253578	NM_144500	ENSMUSG00000039050	Osbpl2	C130070J12Rik|ORP-2|Orp2|mKIAA0772	oxysterol binding protein-like 2	protein-coding	1.10989293325646	0.968389151358757	0.942329026637555	1.16932823257448	1.93825904268891	1.83291551495251	2.01919688932897	2.76264386687899	4.11964866788519	0.00200594062594331	0.0334577511076013
Merged-chr7-3664996-2	chr7	3664896	3665096	+	720.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_181820)	TTS (NM_181820)	844.0	NM_027203	69757.0	Mm.389782	NM_027203	ENSMUSG00000078813	Leng1	1500001K17Rik	leukocyte receptor cluster (LRC) member 1	protein-coding	2.20191357451767	1.33812878450424	1.63434506819624	1.59044204175126	1.84550485331599	1.34581596752903	1.31119874105324	1.94171842749173	-0.290689636311571	0.790560487761533	0.998431161219273
Merged-chr17-45562974-2	chr17	45562874	45563074	+	990.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357105)	promoter-TSS (NM_001357105)	-962.0	NM_001357105	73836.0	Mm.289716	NM_028662	ENSMUSG00000037089	Slc35b2	1110003M08Rik|AA407792|AI842275|PAPST1|Slc35b1	solute carrier family 35, member B2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-100832869-2	chr13	100832769	100832969	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_022885, intron 1 of 15)	CpG	558.0	NM_022885	69048.0	Mm.402215	NM_022885	ENSMUSG00000021629	Slc30a5	1810010K08Rik|AF233321|ZNT5|ZTL1|ZnT-5|Zntl1	solute carrier family 30 (zinc transporter), member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-110237758-1	chr7	110237658	110237858	+	654.333313	f0_balb.idr	intron (NM_009302, intron 1 of 11)	intron (NM_009302, intron 1 of 11)	16055.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-58904166-3	chr19	58904057	58904257	+	735.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001327998, intron 2 of 12)	intron (NM_001327998, intron 2 of 12)	7602.0	NR_037247	100526480.0		NR_037247	ENSMUSG00000092813	Mir3086	mir-3086|mmu-mir-3086	microRNA 3086	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133064071-1	chr4	133063971	133064171	+	741.0	f1_balb.idr	exon (NM_146155, exon 6 of 7)	exon (NM_146155, exon 6 of 7)	52565.0	NM_146155	230793.0	Mm.31816	NM_146155	ENSMUSG00000037692	Ahdc1	D030015G18Rik	AT hook, DNA binding motif, containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-96358109-3	chr16	96357988	96358188	+	762.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3669.0	NM_001177887	72058.0	Mm.119714	NM_028078	ENSMUSG00000000159	Igsf5	2010003D20Rik|JCAM|Jam4	immunoglobulin superfamily, member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-40970981-4	chr4	40970886	40971086	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290449)	promoter-TSS (NM_001290449)	43.0	NM_023739	74164.0	Mm.247456	NM_023739	ENSMUSG00000028423	Nfx1	1300017N15Rik|3000003M19Rik|NFX.1|TEG-42|Tex42	nuclear transcription factor, X-box binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-65965448-2	chr3	65965348	65965548	+	772.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7199.0	NM_001355432	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-20914123-4	chr11	20914007	20914207	+	990.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-82999.0	NM_173752	216551.0	Mm.76694	NM_173752	ENSMUSG00000042363	Lgalsl	1110067D22Rik|A530071M23|Grpa|Hspc159|Lgalsla	lectin, galactoside binding-like	protein-coding	2.20743618305512	2.47764341234842	1.82003142597647	2.6917188860906	2.71537744813281	2.49603503338502	1.37247013191633	2.09471780339687	-0.150048313822279	0.870116275454183	0.998431161219273
Merged-chr11-75190510-4	chr11	75190433	75190633	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144491)	promoter-TSS (NM_144491)	-50.0	NM_144491	116905.0	Mm.41496	NM_144491	ENSMUSG00000078789	Dph1	2310011M22Rik|4930488F09Rik|AW551873|Dph2l1|Ovca1	diphthamide biosynthesis 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-87849895-4	chr6	87849814	87850014	+	837.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355195, intron 1 of 4)	intron (NM_001355195, intron 1 of 4)	1192.0	NM_001109745	12785.0	Mm.290251	NM_013493	ENSMUSG00000030057	Cnbp	AA408710|Cnbp1|Znf9	cellular nucleic acid binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-116669486-3	chr4	116669387	116669587	+	703.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-16112.0	NM_011034	18477.0	Mm.30929	NM_011034	ENSMUSG00000028691	Prdx1	MSP23|NkefA|OSF-3|OSF3|PAG|Paga|PrdxI|PrxI|TDX2|TPxA|Tdpx2|prx1	peroxiredoxin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-165611507-2	chr1	165611407	165611607	+	712.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083897, intron 1 of 5)	L2|LINE|L2	23034.0	NM_001001880	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-23751107-4	chr13	23751013	23751213	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175660)	promoter-TSS (NM_175660)	25.0	NM_175660	319172.0	Mm.423402	NM_175660	ENSMUSG00000061615	Hist1h2ab	H2A.1|H2a-53	histone cluster 1, H2ab	protein-coding	2.46939066629897	1.91059347660147	2.60785623411368	2.45343889172254	1.71987396763553	1.52890313453185	1.23639385917895	1.94725616931948	-2.02262382734804	0.0394298582545487	0.282379291288147
Merged-chr16-55403688-1	chr16	55403588	55403788	+	614.0	f1_c57bl6.idr	Intergenic	Intergenic	-91043.0	NR_039578	100628589.0		NR_039578	ENSMUSG00000093292	Mir5118	mmu-mir-5118|mu-mir-5118	microRNA 5118	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-83101073-2	chr10	83100973	83101173	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021439, intron 2 of 2)	intron (NM_021439, intron 2 of 2)	115576.0	NM_021439	58250.0	Mm.360747	NM_021439	ENSMUSG00000034612	Chst11	1110020P09Rik|C4ST|C4ST-1|C4ST1|C4s	carbohydrate sulfotransferase 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-114390353-6	chr9	114390131	114390331	+	864.0793460000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_019922, exon 1 of 7)	exon (NM_019922, exon 1 of 7)	481.0	NM_019922	56693.0	Mm.20904	NM_019922	ENSMUSG00000032431	Crtap	5730529N23Rik|CASP|Leprel3|P3h5	cartilage associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-146662862-4	chr6	146662758	146662958	+	907.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_046277, intron 1 of 2)	B3A|SINE|B2	5640.0	NR_046277	74925.0	Mm.386304	NR_046277	ENSMUSG00000085238	4930479D17Rik	-	RIKEN cDNA 4930479D17 gene	ncRNA	2.83211672748174	2.84755099321898	2.97219975436936	2.8891447848324	3.01885388753025	2.21998512963345	3.72260158514312	2.90394343155545	0.357244331537182	0.598819467582514	0.972303230574462
Merged-chr5-100441297-2	chr5	100441197	100441397	+	864.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_172714)	TTS (NM_172714)	-11762.0	NR_034038	100503199.0	Mm.392282	NR_034038	ENSMUSG00000097772	5430416N02Rik	100041797|Adapt33|Gm3514	RIKEN cDNA 5430416N02 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44398229-2	chr9	44398129	44398329	+	718.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008063)	promoter-TSS (NM_008063)	53.0	NM_008063	14385.0	Mm.30087	NM_008063	ENSMUSG00000032114	Slc37a4	100043178|G6PT|G6pt1|GSD-1b|mG6PT	solute carrier family 37 (glucose-6-phosphate transporter), member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-19741122-4	chr4	19741006	19741206	+	823.700012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21220.0	NR_151541	102632246.0		NR_151541		Gm12354	-	predicted gene 12354	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-84168244-2	chr15	84168144	84168344	+	931.3333130000001	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_105816)	promoter-TSS (NR_105816)	-26.0	NR_105816	102466642.0		NR_105816	ENSMUSG00000098882	Mir6392	Gm27431|mmu-mir-6392	microRNA 6392	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-90652962-3	chr5	90652874	90653074	+	712.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12447.0	NM_001310656	73246.0	Mm.30172	NM_028478	ENSMUSG00000029370	Rassf6	1600016B17Rik	Ras association (RalGDS/AF-6) domain family member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-9743227-4	chr4	9743102	9743302	+	730.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27383.0	NR_030693	320152.0	Mm.159946	NR_030693		4930412C18Rik	5730591J02Rik	RIKEN cDNA 4930412C18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-87031084-4	chr3	87030990	87031190	+	828.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31750.0	NM_007639	12479.0	Mm.1894	NM_007639	ENSMUSG00000028076	Cd1d1	AI747460|CD1.1|Cd1a|Cd1d|Ly-38	CD1d1 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-34095921-3	chr16	34095811	34096011	+	759.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177357, intron 34 of 59)	intron (NM_177357, intron 34 of 59)	-128873.0	NM_009471	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19406915-2	chr7	19406815	19407015	+	661.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	-2811.0	NM_001286039	232943.0	Mm.213403	NM_146182	ENSMUSG00000040714	Klc3	BC017147|Klct	kinesin light chain 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-105676576-3	chr14	105676474	105676674	+	677.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52804.0	NR_105814	102465207.0		NR_105814	ENSMUSG00000098780	Mir6390	Gm27562|mmu-mir-6390	microRNA 6390	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16057314-4	chr7	16057197	16057397	+	884.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-14548.0	NM_001347559	666528.0	Mm.290718	NM_001099277	ENSMUSG00000078796	Zfp541	EG666528|Znf541	zinc finger protein 541	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-73597543-4	chr16	73597420	73597620	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	744547.0	NR_030464	751561.0		NR_030464	ENSMUSG00000104758	Mir691	Mirn691|mir-691|mmu-mir-691	microRNA 691	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-37010556-4	chr16	37010440	37010640	+	970.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1246.0	NM_029977	77782.0	Mm.259114	NM_029977	ENSMUSG00000034206	Polq	A430110D14Rik	polymerase (DNA directed), theta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-49217849-2	chr13	49217749	49217949	+	839.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1823.0	NM_026738	68480.0	Mm.3336	NM_026738	ENSMUSG00000037960	Card19	1110007C09Rik|AI851695|Bincard	caspase recruitment domain family, member 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127910909-2	chr7	127910809	127911009	+	601.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1608.0	NM_026370	67773.0	Mm.425492	NM_026370	ENSMUSG00000030801	Kat8	2010203C02Rik|5830450F21Rik|D7Ertd629e|MOF|MYST-1|Myst1	K(lysine) acetyltransferase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-23546219-2	chr13	23546119	23546319	+	601.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	2167.0	NM_013548	260423.0	Mm.221389	NM_013548	ENSMUSG00000100210	Hist1h3f	H3.2-221|Hist1	histone cluster 1, H3f	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-3127685-6	chr11	3127650	3127850	+	887.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_003517, intron 3 of 6)	intron (NR_003517, intron 3 of 6)	3729.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-17909218-1	chr11	17909118	17909318	+	731.0	f1_c57bl6.idr	Intergenic	MuLV-int|LTR|ERV1	44657.0	NM_026576	68145.0	Mm.178684	NM_026576	ENSMUSG00000016984	Etaa1	5730466H23Rik|AA672646	Ewing tumor-associated antigen 1	protein-coding	-0.387689996951653	-0.367212528172068	0.864426828632714	-0.378980208282946	-0.048987604745811	-0.365737291195626	-0.372351553410863	-0.378073738954169	-2.48356462004541	0.3220673044577	1
Merged-chr4-144981317-4	chr4	144981226	144981426	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276465, intron 68 of 69)	intron (NM_001276465, intron 68 of 69)	88189.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-43817960-3	chr14	43817874	43818074	+	930.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_007894)	TTS (NM_007894)	1665.0	NM_007894	13586.0	Mm.86948	NM_007894	ENSMUSG00000072601	Ear1	EAR-1|ECP 1|Raf1	eosinophil-associated, ribonuclease A family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-63925395-2	chr15	63925295	63925495	+	914.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_029414)	TTS (NR_029414)	10934.0	NR_029414	74460.0	Mm.390801	NR_029414	ENSMUSG00000100127	Gsdmcl-ps	4933426G20Rik	gasdermin C-like, pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127936447-2	chr7	127936347	127936547	+	982.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001319147, exon 8 of 15)	exon (NM_001319147, exon 8 of 15)	-6334.0	NM_133351	76560.0	Mm.5875	NM_133351	ENSMUSG00000030800	Prss8	2410039E18Rik|AI313909|C79772|CAP1|fr|mCAP1	protease, serine 8 (prostasin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129822530-1	chr4	129822430	129822630	+	542.0	f1_c57bl6.idr	intron (NM_001164745, intron 1 of 5)	intron (NM_001164745, intron 1 of 5)	1822.0	NM_001164745	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-141013575-4	chr5	141013448	141013648	+	975.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12952.0	NM_175362	108723.0	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-47661853-1	chr9	47661753	47661953	+	717.799988	f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	131501.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	4.39338509252848	3.23804923245434	4.0185151848197	4.12239863706806	3.56947083257507	3.26284418790932	3.36809298149485	3.1591846977831	-0.978103591333296	0.0588751974395893	0.358328349110683
Merged-chr14-45049844-4	chr14	45049703	45049903	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61692.0	NM_008964	19217.0	Mm.4630	NM_008964	ENSMUSG00000037759	Ptger2	EP2|Ptgerep2	prostaglandin E receptor 2 (subtype EP2)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-77157034-1	chr14	77156934	77157134	+	542.0	f1_balb.idr	5' UTR (NM_172813, exon 1 of 19)	5' UTR (NM_172813, exon 1 of 19)	271.0	NM_172813	239188.0	Mm.441158	NM_172813	ENSMUSG00000022012	Enox1	B230207J08|D230005D02Rik	ecto-NOX disulfide-thiol exchanger 1	protein-coding	0.879940847813162	0.455772750965413	0.444188251443387	0.435099884958214	1.3692791167934	0.458355080041201	0.666743526746526	1.62099250487512	2.75467314002731	0.116526465007029	0.534780130868259
Merged-chr6-122350777-2	chr6	122350677	122350877	+	731.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	-10550.0	NM_001271579	13619.0	Mm.6822	NM_007905	ENSMUSG00000040669	Phc1	AW557034|Edr|Edr1|Mph1|Rae-28|rae28	polyhomeotic 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-8132092-2	chr14	8131992	8132192	+	716.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360314, intron 4 of 19)	(TG)n|Simple_repeat|Simple_repeat	33881.0	NM_001360315	218699.0	Mm.29515	NM_145458	ENSMUSG00000033885	Pxk	C230080L11Rik|D14Ertd813e|Monaka|Slob	PX domain containing serine/threonine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78928269-4	chr15	78928184	78928384	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008495, intron 2 of 3)	intron (NM_008495, intron 2 of 3)	1559.0	NM_008495	16852.0	Mm.43831	NM_008495	ENSMUSG00000068220	Lgals1	AA410090|Gal-1|Galbp|L-14.5|L14|Lect14|galectin-1	lectin, galactose binding, soluble 1	protein-coding	4.04543350751848	3.30618395137679	2.82424251002646	3.79916283362912	3.5215039867441	2.95085966745549	3.73601926635429	3.75691427225014	-0.0821830631624585	0.884094160960472	0.998431161219273
Merged-chr12-85146566-3	chr12	85146481	85146681	+	825.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146244, intron 4 of 10)	intron (NM_146244, intron 4 of 10)	4683.0	NM_146244	238323.0	Mm.44829	NM_146244	ENSMUSG00000019235	Rps6kl1	A830084F09Rik|AW046440	ribosomal protein S6 kinase-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-49545341-2	chr18	49545241	49545441	+	554.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	22052.0	NR_033785	67321.0	Mm.245802	NR_033785	ENSMUSG00000100297	1700044K03Rik	-	RIKEN cDNA 1700044K03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32971545-2	chr2	32971445	32971645	+	950.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8244.0	NR_002898	104367.0	Mm.250030	NR_002898	ENSMUSG00000065124	Snora65	MBII-351|Rnu65	small nucleolar RNA, H/ACA box 65	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-167928858-2	chr1	167928758	167928958	+	578.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	239300.0	NM_033652	110648.0	Mm.330081	NM_033652	ENSMUSG00000026686	Lmx1a	Lmx1.1|dr|dreher|sst	LIM homeobox transcription factor 1 alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-5897919-3	chr5	5897829	5898029	+	636.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-148612.0	NM_027399	70358.0	Mm.85429	NM_027399	ENSMUSG00000015652	Steap1	2410007B19Rik|Prss24|Steap	six transmembrane epithelial antigen of the prostate 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-95416173-4	chr11	95416077	95416277	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359107, intron 1 of 9)	intron (NM_001359107, intron 1 of 9)	2094.0	NM_001359107	20747.0	Mm.285454	NM_025287	ENSMUSG00000057522	Spop	AI315626|Pcif1|TEF2	speckle-type POZ protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-61340304-2	chr10	61340204	61340404	+	721.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013753, intron 17 of 19)	ID_B1|SINE|B4	42468.0	NM_011073	18646.0	Mm.240313	NM_011073	ENSMUSG00000037202	Prf1	Pfn|Pfp|Prf-1	perforin 1 (pore forming protein)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-69985347-4	chr8	69985229	69985429	+	694.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286450, intron 1 of 12)	intron (NM_001286450, intron 1 of 12)	-10946.0	NM_001113346	234366.0	Mm.270044	NM_145596	ENSMUSG00000036180	Gatad2a	1110066C11Rik|BC031407|C80248	GATA zinc finger domain containing 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-73456242-2	chr2	73456142	73456342	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153138, intron 1 of 7)	PB1D7|SINE|Alu	-2353.0	NM_001289722	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-25482564-2	chr14	25482464	25482664	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	23379.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127840904-2	chr7	127840804	127841004	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009294)	promoter-TSS (NM_009294)	-904.0	NM_009294	20909.0	Mm.24867	NM_009294	ENSMUSG00000030805	Stx4a	Stx4|Syn-4|Syn4	syntaxin 4A (placental)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-3025531-4	chr9	3025431	3025631	+	990.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GSAT_MM|Satellite|Satellite	13212.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-43180625-4	chr5	43180515	43180715	+	986.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028417, intron 5 of 7)	intron (NR_028417, intron 5 of 7)	-52848.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	1.32570611667679	1.22536242008347	0.829505448091477	1.40214244880073	1.67533351703427	1.38447453659524	1.02952581422038	1.00511031162893	0.389306390265135	0.765474580061571	0.998431161219273
Merged-chr15-59680275-2	chr15	59680175	59680375	+	782.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31621.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166977745-4	chr2	166977669	166977869	+	816.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109905, intron 1 of 11)	intron (NM_001109905, intron 1 of 11)	-13052.0	NR_111895	20853.0	Mm.73276	NM_011490	ENSMUSG00000039536	Stau1	5830401L18Rik|AW549911|C85792|Stau	staufen double-stranded RNA binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-91961111-4	chr5	91961019	91961219	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_073442, intron 1 of 9)	intron (NR_073442, intron 1 of 9)	1437.0	NR_073442	68098.0	Mm.159453	NM_026557	ENSMUSG00000029397	Rchy1	ARNIP|CHIMP|Pirh2|Zfp363|Znf363	ring finger and CHY zinc finger domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-112003315-4	chr13	112003178	112003378	+	957.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	135342.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	0.872713105086742	0.558450163910797	0.790941124735855	0.521898776697949	0.499371507636444	0.388084526209236	0.382704892485484	0.862428109234227	-0.961731527103459	0.57123942153589	1
Merged-chr2-166620611-2	chr2	166620511	166620711	+	589.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 6 of 39)	MTE2b|LTR|ERVL-MaLR	56089.0	NR_152154	433503.0	Mm.491336	NR_152154		Gm29679	-	predicted gene, 29679	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120230382-2	chr11	120230282	120230482	+	869.75	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_151480, exon 2 of 2)	non-coding (NR_151480, exon 2 of 2)	1235.0	NR_151480	102640779.0	Mm.394084	NM_175248		2900052L18Rik	-	RIKEN cDNA 2900052L18 gene	ncRNA	0.0434167756309831	-0.496267531085851	-0.499971334865586	-0.502823233414139	0.0546277025787766	-0.495431500287674	-0.499155146778299	-0.502325373264262	0.0419527451125213	0.988073760716967	1
Merged-chr13-55362779-4	chr13	55362687	55362887	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025828)	promoter-TSS (NM_025828)	-4.0	NM_025828	66890.0	Mm.38868	NM_025828	ENSMUSG00000021484	Lman2	1110003H06Rik|1300009F09Rik|AA408240|AL023023|AU040819|GP36B|VIP36	lectin, mannose-binding 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-90270603-7	chr9	90270540	90270740	+	970.380981	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_194334, exon 1 of 13)	exon (NM_194334, exon 1 of 13)	129.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-54029919-2	chr5	54029819	54030019	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081103, intron 1 of 11)	ERVL-B4-int|LTR|ERVL	31396.0	NM_001081103	116873.0	Mm.265985	NM_054083	ENSMUSG00000039156	Stim2	-	stromal interaction molecule 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-142023412-4	chr4	142023338	142023538	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131014, intron 1 of 1)	intron (NR_131014, intron 1 of 1)	5540.0	NR_131014	78917.0	Mm.139995	NR_131014	ENSMUSG00000085761	4930455G09Rik	-	RIKEN cDNA 4930455G09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44482711-4	chr9	44482605	44482805	+	953.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357490)	promoter-TSS (NM_001357490)	-120.0	NM_001357490	80288.0	Mm.370270	NM_030256	ENSMUSG00000063382	Bcl9l	B9L|BC003321|BCL9-2|DLNB11	B cell CLL/lymphoma 9-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28967291-4	chr17	28967183	28967383	+	894.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001356299, exon 7 of 7)	3' UTR (NM_001356299, exon 7 of 7)	14067.0	NM_025888	66989.0	Mm.435	NM_025888	ENSMUSG00000005936	Kctd20	2410004N11Rik|AI451943|AW541186|D17Ertd562e	potassium channel tetramerisation domain containing 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-43338504-3	chr17	43338434	43338634	+	568.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21897.0	NM_001357332	224792.0	Mm.23478	NM_001081178	ENSMUSG00000056492	Adgrf5	8430401C09Rik|9330185D23|AI528491|Gpr116|mKIAA0758	adhesion G protein-coupled receptor F5	protein-coding	2.90617694153173	3.64468405001579	2.09435898595285	1.80975847081116	3.34792321031364	3.09091064063801	3.08649295912328	3.24209256320486	0.643229562210008	0.378584134232288	0.871397690824179
Merged-chr5-85916050-2	chr5	85915950	85916150	+	638.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	149533.0	NM_001345902	12617.0	Mm.4649	NM_007683	ENSMUSG00000029253	Cenpc1	CENP-C|Cenpc	centromere protein C1	protein-coding	-0.103294060256022	-0.411329100339296	-0.136450765688835	-0.416246219803195	-0.419218594638575	-0.410695675046181	-0.0202685466769294	-0.415875912354046	-0.491399646282371	0.850132995541175	1
Merged-chr17-34586373-2	chr17	34586273	34586473	+	805.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_010929, intron 27 of 29)	PB1D9|SINE|Alu	-3433.0	NM_134116	106512.0	Mm.26584	NM_134116	ENSMUSG00000034786	Gpsm3	AA960287|AGS4	G-protein signalling modulator 3 (AGS3-like, C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-4151410-3	chr7	4151319	4151519	+	868.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_021454, exon 3 of 3)	exon (NM_021454, exon 3 of 3)	-1547.0	NM_175529	243813.0	Mm.347643	NM_175529	ENSMUSG00000043432	Leng9	9530024C23Rik|F630035L11Rik	leukocyte receptor cluster (LRC) member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-8010110-4	chr10	8010003	8010203	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53980.0	NM_138667	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-11589383-4	chr19	11589292	11589492	+	942.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026835, intron 5 of 6)	intron (NM_026835, intron 5 of 6)	15412.0	NM_026835	68774.0	Mm.290390	NM_026835	ENSMUSG00000024679	Ms4a6d	1110058E16Rik|AI447446|Ms4a11	membrane-spanning 4-domains, subfamily A, member 6D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-136243915-2	chr5	136243815	136244015	+	779.5476070000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001302938, intron 1 of 8)	CpG	1025.0	NM_001302939	23921.0	Mm.425294	NM_018825	ENSMUSG00000005057	Sh2b2	Aps	SH2B adaptor protein 2	protein-coding	1.0051325239096	0.441085576513141	0.435367807989124	0.706382062831094	1.0162164029092	0.771582412517714	0.598501644763224	0.431754362293585	0.3123456159213	0.858010031176952	1
Merged-chr11-43362053-4	chr11	43361946	43362146	+	992.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13A2|LTR|ERVK	12415.0	NR_029558	387164.0		NR_029558	ENSMUSG00000065601	Mir146	Mirn146|miR-146a|mmu-mir-146	microRNA 146	ncRNA	3.19126021268526	4.40114153952164	3.86502336390668	4.2509969967813	3.46178280659218	3.41229728211919	3.74996316000256	3.6366473363311	-0.613046683914032	0.226701314606258	0.719693695355235
Merged-chr7-43343352-4	chr7	43343256	43343456	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7985.0	NM_001271019	233186.0	Mm.290569	NM_145581	ENSMUSG00000039013	Siglecf	Siglec5|mSiglec-F	sialic acid binding Ig-like lectin F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30508251-4	chr7	30508148	30508348	+	922.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019546, intron 7 of 9)	intron (NM_019546, intron 7 of 9)	-6874.0	NR_036630	100504207.0	Mm.297831	NM_001004161	ENSMUSG00000062132	Arhgap33os	Gm1082	Rho GTPase activating protein 33, opposite strand	ncRNA	4.18485596336375	3.41410029943046	4.50362783628749	4.56037754753033	2.30264681189412	2.23148242127161	1.88449018024313	2.61016752630312	-3.12699155792533	8.48181192902785e-07	5.67461595861391e-05
Merged-chr14-21889599-2	chr14	21889499	21889699	+	654.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40689.0	NM_026965	69156.0	Mm.11827	NM_026965	ENSMUSG00000021773	Comtd1	1810030M08Rik|MT773	catechol-O-methyltransferase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-32472517-4	chr9	32472426	32472626	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008026, intron 2 of 8)	Lx8|LINE|L1	68926.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117335267-2	chr8	117335167	117335367	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	-13903.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-13272978-4	chr2	13272873	13273073	+	943.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1558.0	NM_009105	20163.0	Mm.905	NM_009105	ENSMUSG00000026727	Rsu1	RsuI|rsp-1	Ras suppressor protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100461793-4	chr7	100461694	100461894	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001017985, intron 32 of 32)	intron (NM_001017985, intron 32 of 32)	-11197.0	NM_009464	22229.0	Mm.6254	NM_009464	ENSMUSG00000032942	Ucp3	AI645527|Slc25a9|UCP-3	uncoupling protein 3 (mitochondrial, proton carrier)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-66481835-2	chr18	66481735	66481935	+	697.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-22343.0	NR_040528	100503565.0	Mm.98256	NR_040528		Gm9926	-	predicted gene 9926	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-98322435-4	chr4	98322339	98322539	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60826.0	NM_053157	94043.0	Mm.331719	NM_053157	ENSMUSG00000028563	Tm2d1	2310026L18Rik|AA990549|Bbp	TM2 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-32268099-4	chr4	32267998	32268198	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-149337.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-87108417-4	chr15	87108332	87108532	+	775.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-435867.0	NM_001252310	106014.0	Mm.244319	NM_134096	ENSMUSG00000054863	Fam19a5	TAFA5|Tafa-5|Tara-5	family with sequence similarity 19, member A5	protein-coding	-1.84354474832578	-1.81325489144778	-1.53416061964661	-1.82993901100912	-1.8414184563789	-1.81126990231468	-1.82034119297928	-1.82859217979378	-1.52252619601533	0.665276690233728	1
Merged-chr1-142468481-3	chr1	142468374	142468574	+	994.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1172223.0	NM_020025	26878.0	Mm.285580	NM_020025	ENSMUSG00000033849	B3galt2	-	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70596631-2	chr11	70596531	70596731	+	546.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016713, intron 1 of 30)	B3|SINE|B2	-19263.0	NM_001145537	668433.0	Mm.425687	NM_001145537	ENSMUSG00000087279	4930544D05Rik	-	RIKEN cDNA 4930544D05 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41267003-2	chr19	41266903	41267103	+	888.6666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2999.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-43425177-3	chr6	43425106	43425306	+	803.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311111, intron 6 of 7)	intron (NM_001311111, intron 6 of 7)	-17223.0	NR_045988	319812.0	Mm.446393	NR_045988		9430018G01Rik	-	RIKEN cDNA 9430018G01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-17816358-3	chr5	17816257	17816457	+	928.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159557, intron 5 of 15)	intron (NM_001159557, intron 5 of 15)	19539.0	NM_001159555	12491.0	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 molecule	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97697777-2	chr11	97697677	97697877	+	613.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163308, intron 1 of 9)	intron (NM_001163308, intron 1 of 9)	1607.0	NM_001163307	22658.0	Mm.2418	NM_009545	ENSMUSG00000018537	Pcgf2	Mel18|Rnf110|Zfp144|mel-18	polycomb group ring finger 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-36121560-4	chr17	36121458	36121658	+	916.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_046286)	promoter-TSS (NR_046286)	-114.0	NR_046286	15024.0	Mm.426031	NM_010395	ENSMUSG00000079491	H2-T10	H-2T10	histocompatibility 2, T region locus 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-119836892-5	chr8	119836795	119836995	+	801.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028071, intron 2 of 3)	intron (NM_028071, intron 2 of 3)	3684.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111374136-2	chr12	111374036	111374236	+	544.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_183016, intron 1 of 36)	B3|SINE|B2	3582.0	NM_183016	217866.0	Mm.27397	NM_183016	ENSMUSG00000021279	Cdc42bpb	MRCKb	CDC42 binding protein kinase beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-134420332-4	chr1	134420273	134420473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001306069, intron 1 of 7)	intron (NM_001306069, intron 1 of 7)	4709.0	NM_001306069	72674.0	Mm.259976	NM_028320	ENSMUSG00000026457	Adipor1	2810031L11Rik|ACDCR1|CGI-45|Paqr1	adiponectin receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-31055678-2	chr3	31055578	31055778	+	700.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16712.0	NR_105975	102465610.0		NR_105975	ENSMUSG00000098890	Mir7008	Gm27752|mmu-mir-7008	microRNA 7008	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-97426815-1	chr7	97426715	97426915	+	722.0	f1_c57bl6.idr	Intergenic	Intergenic	-9265.0	NM_009381	21835.0	Mm.28585	NM_009381	ENSMUSG00000035686	Thrsp	S14|SPOT14	thyroid hormone responsive	protein-coding	-1.33968511576914	-1.30956341409706	-1.31970802375329	-1.32804110817214	-0.94743229445443	-1.14774401221339	-1.31741150649064	-1.32654949004532	2.34703116667703	0.48488442496103	1
Merged-chr17-27700091-3	chr17	27700006	27700206	+	781.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178365, intron 1 of 9)	MTD|LTR|ERVL-MaLR	14867.0	NM_178365	23969.0	Mm.4926	NM_011861	ENSMUSG00000040276	Pacsin1	A830061D09Rik|H74|mKIAA1379|syndapin	protein kinase C and casein kinase substrate in neurons 1	protein-coding	1.08215361707497	1.20923492638608	0.805432192481333	1.67566884848166	1.32349338384363	1.37106892575688	1.44701912247365	0.797496002198714	0.0737480458239704	0.95692105942049	0.998431161219273
Merged-chr18-70566958-2	chr18	70566858	70567058	+	608.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1334.0	NM_001311071	17191.0	Mm.322	NM_010773	ENSMUSG00000024513	Mbd2	MBD2a	methyl-CpG binding domain protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81060302-4	chr10	81060203	81060403	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024499)	promoter-TSS (NM_024499)	-32.0	NM_024499	52551.0	Mm.30068	NM_024499	ENSMUSG00000004937	Sgta	5330427H01Rik|AI194281|D10Ertd190e|Sgt|Stg	small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-70495095-4	chr18	70495007	70495207	+	804.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289650, intron 6 of 8)	RMER15|LTR|ERVL	-21679.0	NR_105775	102466152.0		NR_105775	ENSMUSG00000098721	Mir6357	Gm27333|mmu-mir-6357	microRNA 6357	ncRNA	2.92684632844609	3.35459924509469	2.25257633072076	2.34555556091659	3.21780257923413	3.02504985659144	2.08165347796473	3.01652300177872	0.196733547544423	0.788928462406282	0.998431161219273
Merged-chr8-109002084-3	chr8	109001988	109002188	+	702.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	65228.0	NR_037295	100526511.0		NR_037295	ENSMUSG00000093241	Mir3108	mir-3108|mmu-mir-3108	microRNA 3108	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-91037501-3	chr13	91037392	91037592	+	828.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025770, intron 4 of 7)	PB1D7|SINE|Alu	114370.0	NM_024175	66475.0	Mm.306302	NM_024175	ENSMUSG00000049517	Rps23	2410044J15Rik	ribosomal protein S23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80065430-2	chr10	80065330	80065530	+	710.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359635, intron 14 of 31)	intron (NM_001359635, intron 14 of 31)	10009.0	NM_001359636	216161.0	Mm.262102	NM_183426	ENSMUSG00000035673	Sbno2	BC019206|F730040C21|Sno|Stno	strawberry notch 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-73293730-3	chr5	73293570	73293770	+	762.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023429, intron 1 of 8)	intron (NM_023429, intron 1 of 8)	876.0	NM_001159888	68095.0	Mm.247039	NM_023429	ENSMUSG00000029152	Ociad1	6030432N09Rik|AI481327|AW557942|Asrij|B230209J16Rik|BB021357|Emi2|Imi2|OCIA|TPA018	OCIA domain containing 1	protein-coding	1.57620332652935	3.20820576704614	1.20369082302177	2.0296394261256	2.73518028603275	3.29886062762834	2.11523204389987	1.1754718159189	0.576003536350415	0.58292264829956	0.966599221005409
Merged-chr2-129539350-3	chr2	129539260	129539460	+	828.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2758.0	NM_177653	228592.0	Mm.452175	NM_177653	ENSMUSG00000043727	F830045P16Rik	Sirpb3	RIKEN cDNA F830045P16 gene	protein-coding	1.79353443945266	1.7450528484466	1.09044245575075	2.4215637422179	1.80918815948015	1.11814165487429	2.36482394727999	1.48617376811918	-0.192464971748653	0.867570680705682	0.998431161219273
Merged-chr7-78865047-4	chr7	78864939	78865139	+	953.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17828.0	NM_029585	76375.0	Mm.250541	NM_029585	ENSMUSG00000030610	Det1	2610034H20Rik	de-etiolated homolog 1 (Arabidopsis)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-79759791-4	chr9	79759714	79759914	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009945)	promoter-TSS (NM_009945)	39.0	NM_009945	12866.0	Mm.152627	NM_009945	ENSMUSG00000032330	Cox7a2	COX7AL|Cox7a3|CoxVIIa-L	cytochrome c oxidase subunit VIIa 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-99224475-4	chr4	99224390	99224590	+	963.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001145967, exon 7 of 11)	exon (NM_001145967, exon 7 of 11)	30343.0	NM_001145967	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-149820216-2	chr4	149820116	149820316	+	817.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	-45949.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-58480944-4	chr2	58480834	58481034	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355048, intron 3 of 10)	intron (NM_001355048, intron 3 of 10)	80476.0	NM_001355049	11477.0	Mm.689	NM_007394	ENSMUSG00000026836	Acvr1	ALK2|ActR-I|ActRIA|Acvr|Acvrlk2|Alk-2|Alk8|D330013D15Rik|SKR1|Tsk7L	activin A receptor, type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5573222-4	chr17	5573148	5573348	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	X7A_LINE|LINE|CR1	80648.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-66295133-3	chr9	66295033	66295233	+	885.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55317.0	NM_145617	235439.0	Mm.244179	NM_145617	ENSMUSG00000038664	Herc1	2810449H11Rik|B230218H07|D130015N03Rik|tbl	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-50993817-4	chr17	50993708	50993908	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028162, intron 3 of 21)	intron (NM_028162, intron 3 of 21)	165570.0	NM_001285993	72238.0	Mm.120650	NM_028162	ENSMUSG00000023923	Tbc1d5	1600014N05Rik	TBC1 domain family, member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-25321345-4	chr10	25321239	25321439	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-22176.0	NM_018747	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-60883119-4	chr2	60883007	60883207	+	725.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	-1669.0	NM_001141931	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-13660610-4	chr1	13660514	13660714	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145381)	promoter-TSS (NM_145381)	-105.0	NM_145381	212442.0	Mm.89572	NM_145381	ENSMUSG00000025937	Lactb2	Cgi-83|E430032H21Rik	lactamase, beta 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30730959-2	chr2	30730859	30731059	+	965.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9749.0	NR_037272	100526499.0		NR_037272	ENSMUSG00000093091	Mir3089	mir-3089|mmu-mir-3089	microRNA 3089	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-70387545-3	chr16	70387452	70387652	+	938.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028803, intron 2 of 15)	intron (NM_028803, intron 2 of 15)	73603.0	NM_028803	74185.0	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	1.45245111299764	2.16888499926266	2.28311349975367	1.12530382872342	1.60523512231378	1.94027361259791	1.73421032121387	1.93569845368386	-0.134499217461398	0.90007353896411	0.998431161219273
Merged-chr13-63696610-3	chr13	63696520	63696720	+	857.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_126476, intron 4 of 4)	intron (NR_126476, intron 4 of 4)	37678.0	NR_126476	75522.0	Mm.54259	NR_126476	ENSMUSG00000113825	1700024I08Rik	-	RIKEN cDNA 1700024I08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127511293-2	chr10	127511193	127511393	+	830.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3646.0	NM_001098789	407790.0	Mm.336856	NM_001098789	ENSMUSG00000040280	Ndufa4l2	BC064011	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4-like 2	protein-coding	-0.700064241511417	-0.186671140929496	-0.692852367725508	-0.695563882069579	-0.699394869705802	-0.177296101845517	-0.692077155152847	-0.695090216270211	0.0394491945098347	0.989215944639676	1
Merged-chr10-77624579-2	chr10	77624479	77624679	+	943.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_019803, intron 1 of 5)	MLT1C|LTR|ERVL-MaLR	2258.0	NM_019803	22213.0	Mm.458125	NM_019803	ENSMUSG00000009293	Ube2g2	1110003O05Rik|D10Xrf369|UBC7|Ubc7p	ubiquitin-conjugating enzyme E2G 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-163619315-2	chr2	163619215	163619415	+	816.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_181734)	TTS (NM_181734)	12103.0	NM_001305803	76080.0	Mm.89828	NM_029512	ENSMUSG00000017679	Ttpal	3110080A02Rik|5830472M02Rik	tocopherol (alpha) transfer protein-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-73612763-2	chr12	73612657	73612857	+	601.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001313977, intron 2 of 14)	intron (NM_001313977, intron 2 of 14)	27961.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	1.75978621504467	1.78655574305219	1.73214045949727	2.21874030584153	2.45959279194572	2.67573790259723	1.7443252063159	2.119613522058	1.04951700001271	0.252544268167941	0.750119406264342
Merged-chr6-113630486-4	chr6	113630369	113630569	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009507, exon 3 of 3)	3' UTR (NM_009507, exon 3 of 3)	6448.0	NM_009507	22346.0	Mm.29407	NM_009507	ENSMUSG00000033933	Vhl	Vhlh	von Hippel-Lindau tumor suppressor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-85588271-4	chr9	85588177	85588377	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	161057.0	NM_001081282	108837.0	Mm.22315	NM_175371	ENSMUSG00000035941	Ibtk	5430411K16Rik|AA409502|BTKI|mKIAA1417	inhibitor of Bruton agammaglobulinemia tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-173768406-2	chr2	173768306	173768506	+	687.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019806, intron 2 of 5)	intron (NM_019806, intron 2 of 5)	30835.0	NM_019806	56491.0	Mm.260456	NM_019806	ENSMUSG00000054455	Vapb	AI225786|AI840687|AI848259|D2Abb2e|R75548|VAP33b|Vamp33b	vesicle-associated membrane protein, associated protein B and C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-87841774-4	chr10	87841682	87841882	+	979.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16483.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-54690720-2	chr1	54690625	54690825	+	682.5	f0_balb.idr|f1_c57bl6.idr	intron (NM_001081433, intron 16 of 27)	intron (NM_001081433, intron 16 of 27)	-133041.0	NM_001163314	241062.0	Mm.103539	NM_175508	ENSMUSG00000073678	Pgap1	5033403E17Rik|9030223K07Rik|A530084K22|D230012E17Rik|oto	post-GPI attachment to proteins 1	protein-coding	0.358374599806104	-0.242020020882948	-0.246158114615842	-0.249340849034934	0.00556530845932206	-0.241085224326897	-0.245246677650641	0.163181657030435	-0.0807837177922499	0.973629117035225	1
Merged-chr8-69715489-2	chr8	69715376	69715576	+	752.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039967, intron 1 of 5)	intron (NM_001039967, intron 1 of 5)	1426.0	NM_001039967	66869.0	Mm.334581	NM_181274	ENSMUSG00000054648	Zfp869	1200003I07Rik	zinc finger protein 869	protein-coding	1.61436381888477	2.05628213473943	0.936400290969271	0.677504868440269	0.656178598284089	1.88795658610418	0.696204508489216	0.913100275803258	-0.896840263806003	0.541812572578753	0.954866069207078
Merged-chr15-100674060-4	chr15	100673973	100674173	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_033612)	TTS (NM_033612)	-4573.0	NM_001270537	668218.0	Mm.451225	NM_001270537	ENSMUSG00000098112	Bin2	-	bridging integrator 2	protein-coding	4.02579132604685	3.94528571138172	3.93991918310945	3.17677721146062	3.67848666031395	3.06389045055514	2.49224083969561	3.09219376175737	-0.997279934706648	0.0814784721041076	0.436289218226012
Merged-chr10-126513388-3	chr10	126513269	126513469	+	758.633362	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	197022.0	NR_105841	102465224.0		NR_105841	ENSMUSG00000098756	Mir378d	Gm27650|mmu-mir-378d	microRNA 378d	ncRNA	2.65617667396662	2.01973719739935	1.45775060993099	2.37240506219461	3.04393399765127	2.80092837538517	2.59093942808135	3.42720842483484	1.58336673008479	0.0479215335553273	0.317869961110247
Merged-chr13-99327586-4	chr13	99327443	99327643	+	992.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026873, intron 7 of 9)	intron (NM_026873, intron 7 of 9)	17135.0	NM_026873	68927.0	Mm.276502	NM_026873	ENSMUSG00000021650	Ptcd2	1190005P08Rik	pentatricopeptide repeat domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-73650569-4	chr16	73650466	73650666	+	837.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	691501.0	NR_030464	751561.0		NR_030464	ENSMUSG00000104758	Mir691	Mirn691|mir-691|mmu-mir-691	microRNA 691	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-18794642-4	chr13	18794543	18794743	+	923.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172120, intron 7 of 28)	intron (NM_172120, intron 7 of 28)	77351.0	NM_172120	218035.0	Mm.27389	NM_172120	ENSMUSG00000041236	Vps41	AI317346|Vam2|mVam2	VPS41 HOPS complex subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-62543680-4	chr10	62543572	62543772	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16227.0	NM_001358965	19073.0	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-29806516-3	chr11	29806398	29806598	+	762.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146016, intron 17 of 41)	Lx8|LINE|L1	19170.0	NM_176829	216622.0	Mm.443260	NM_176829	ENSMUSG00000078157	4931440F15Rik	Fem1ab	RIKEN cDNA 4931440F15 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117724469-3	chr10	117724384	117724584	+	886.75	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-13726.0	NM_001288586	17246.0	Mm.22670	NM_010786	ENSMUSG00000020184	Mdm2	1700007J15Rik|AA415488|Mdm-2	transformed mouse 3T3 cell double minute 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-122466201-3	chr7	122466085	122466285	+	777.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316672, intron 5 of 16)	A-rich|Low_complexity|Low_complexity	177060.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-116914166-4	chr2	116914056	116914256	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14004.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47592810-2	chr17	47592710	47592910	+	675.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007632)	promoter-TSS (NM_007632)	-657.0	NM_007632	12445.0	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-123371177-4	chr7	123371072	123371272	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-1257.0	NM_001316713	70497.0	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-79794682-2	chr10	79794582	79794782	+	613.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_023128, intron 1 of 8)	intron (NM_023128, intron 1 of 8)	1110.0	NM_001161747	18483.0	Mm.34650	NM_023128	ENSMUSG00000035863	Palm	-	paralemmin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-25015440-2	chr13	25015340	25015540	+	597.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013389, intron 2 of 10)	IAPEY4_LTR|LTR|ERVK	4877.0	NM_001013389	380836.0	Mm.387097	NM_001013389	ENSMUSG00000021339	Mrs2	Gm902|HPT|Mrs2l|RPT	MRS2 magnesium transporter	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-128242287-2	chr1	128242187	128242387	+	838.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1850.0	NM_026390	67812.0	Mm.293321	NM_026390	ENSMUSG00000026353	Ubxn4	1300013G12Rik|Ubxd2|mKIAA0242	UBX domain protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-137370606-4	chr4	137370551	137370751	+	939.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	-12892.0	NM_001243769	12540.0	Mm.1022	NM_009861	ENSMUSG00000006699	Cdc42	AI747189|AU018915	cell division cycle 42	protein-coding	2.19181045892894	2.45965637727073	3.33297788489136	2.77821134061756	2.33984123056792	2.31094841192425	3.21993295571865	2.8849767292632	-0.0330874587881107	0.964805051825876	0.998431161219273
Merged-chr4-132422553-4	chr4	132422440	132422640	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175306)	promoter-TSS (NM_175306)	-94.0	NM_175306	100169.0	Mm.158361	NM_175306	ENSMUSG00000066043	Phactr4	3110001B12Rik|AI527228|AW495572|C330013F19Rik|N28169|mKIAA4120	phosphatase and actin regulator 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-51915807-4	chr1	51915662	51915862	+	881.875	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001161817, exon 1 of 31)	5' UTR (NM_001161817, exon 1 of 31)	216.0	NM_001161817	17912.0	Mm.3390	NM_010863	ENSMUSG00000018417	Myo1b	AA406997|MIH-L|MMIa	myosin IB	protein-coding	1.52126132044536	1.00440078512274	1.37359475537596	1.6043570818964	1.41846234000126	1.23869813065704	2.06850073415058	1.7241066880443	0.889682824003885	0.44785762835909	0.914814758844887
Merged-chr19-6909653-4	chr19	6909528	6909728	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026306)	promoter-TSS (NM_026306)	-70.0	NM_001166370	67674.0	Mm.318804	NM_026306	ENSMUSG00000038812	Trmt112	0610038D11Rik|Trm112p	tRNA methyltransferase 11-2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-87329971-4	chr3	87329883	87330083	+	990.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-27898.0	NM_009690	11801.0	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	5.48071031637034	5.403608270239	5.05789174158505	4.43870443563522	4.3491636438255	4.10042794423894	4.43297181500843	4.12009165553921	-1.09867684934065	0.00327066864433649	0.0483701953719288
Merged-chr4-99928789-4	chr4	99928704	99928904	+	812.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028132)	promoter-TSS (NM_028132)	-647.0	NM_028132	72157.0	Mm.217764	NM_028132	ENSMUSG00000025791	Pgm2	2610020G18Rik|AA407108|AI098105|Pgm-2|Pgm1	phosphoglucomutase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25707728-4	chr7	25707637	25707837	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11316.0	NM_028771	52132.0	Mm.278798	NM_028771	ENSMUSG00000002608	Ccdc97	1200014H14Rik|2810446P04Rik|AA545218|D7Ertd462e	coiled-coil domain containing 97	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-79976961-2	chr10	79976861	79977061	+	598.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001003949)	TTS (NM_001003949)	6237.0	NM_130455	170483.0	Mm.391566	NM_130455	ENSMUSG00000035745	Grin3b	GluN3B|NR3B	glutamate receptor, ionotropic, NMDA3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-139308087-4	chr4	139307986	139308186	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145384, intron 1 of 8)	intron (NM_145384, intron 1 of 8)	2622.0	NR_151463	212555.0	Mm.45131	NM_145384	ENSMUSG00000028744	Pqlc2	BC019216	PQ loop repeat containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47156406-4	chr17	47156300	47156500	+	923.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001097623, intron 3 of 19)	intron (NM_001097623, intron 3 of 19)	15458.0	NM_001097623	224829.0	Mm.260989	NM_172622		Trerf1	9430096I18Rik|AI429294|B830015H24|RAPA|Trep-132|Trep132	transcriptional regulating factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-130797211-7	chr4	130797112	130797312	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011520, intron 1 of 4)	intron (NM_011520, intron 1 of 4)	4675.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-36713596-2	chr16	36713496	36713696	+	661.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285788, intron 3 of 7)	RLTR28|LTR|ERVL	19618.0	NM_001285791	106347.0	Mm.17807	NM_134109	ENSMUSG00000022900	Ildr1	AU041483|AU044638	immunoglobulin-like domain containing receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26113716-2	chr17	26113616	26113816	+	831.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021793, intron 1 of 12)	CpG	400.0	NM_021793	60455.0	Mm.304656	NM_021793	ENSMUSG00000024180	Tmem8	AW490096|GPI-PLA2|M83|Pgap6|Tmem8a	transmembrane protein 8 (five membrane-spanning domains)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-31357243-2	chr6	31357143	31357343	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41530.0	NR_040300	100503869.0	Mm.370532	NR_040300	ENSMUSG00000086212	Mkln1os	Gm13845	muskelin 1, intracellular mediator containing kelch motifs, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-94136660-2	chr11	94136560	94136760	+	692.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-74794.0	NM_009427	22057.0	Mm.259673	NM_009427	ENSMUSG00000037573	Tob1	Tob|Trob	transducer of ErbB-2.1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-115309202-2	chr9	115309090	115309290	+	936.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_024222, intron 1 of 15)	intron (NM_024222, intron 1 of 15)	1231.0	NM_024222	68292.0	Mm.296158	NM_024222	ENSMUSG00000032437	Stt3b	1300006C19Rik|Simp	STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae)	protein-coding	1.83100288871564	1.02544944645136	1.68168535113052	1.36295184203142	1.66600740437741	2.08915365170487	1.2289802449954	1.36927241556666	0.386038968506555	0.741436889613709	0.998431161219273
Merged-chr14-122020803-2	chr14	122020703	122020903	+	679.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_026861, exon 9 of 9)	3' UTR (NM_026861, exon 9 of 9)	-13871.0	NM_001037744	223262.0	Mm.297637	NM_001037744	ENSMUSG00000071229	Timm8a2	-	translocase of inner mitochondrial membrane 8A2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120656523-2	chr11	120656423	120656623	+	805.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175263, intron 8 of 11)	intron (NM_175263, intron 8 of 11)	4314.0	NM_175263	77583.0	Mm.32839	NM_175263	ENSMUSG00000042988	Notum	5730593N15Rik	notum palmitoleoyl-protein carboxylesterase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117144328-3	chr10	117144207	117144407	+	784.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177798, intron 1 of 9)	RSINE1|SINE|B4	4167.0	NM_177798	327826.0	Mm.135965	NM_177798	ENSMUSG00000020170	Frs2	4732458E18|C330018A15Rik|Frs2alpha|SNT1	fibroblast growth factor receptor substrate 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19006651-4	chr7	19006497	19006697	+	944.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_178757, exon 1 of 1)	3' UTR (NM_178757, exon 1 of 1)	2532.0	NM_178757	272359.0	Mm.274237	NM_178757	ENSMUSG00000044030	Irf2bp1	6330414O09Rik|C530033F24	interferon regulatory factor 2 binding protein 1	protein-coding	1.92192606161554	1.99662732656224	2.68302142295812	1.88170606538224	2.34102116021421	2.01067306285186	1.57952479714808	2.54337604254347	0.0163828127728804	0.985737135990093	0.998431161219273
Merged-chr2-61593083-4	chr2	61592988	61593188	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164071)	promoter-TSS (NM_001164071)	-9.0	NR_149324	21353.0	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19631224-2	chr7	19631124	19631324	+	721.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_019649)	TTS (NM_019649)	-1786.0	NM_009046	19698.0	Mm.1741	NM_009046	ENSMUSG00000002983	Relb	shep	avian reticuloendotheliosis viral (v-rel) oncogene related B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-123372892-2	chr8	123372792	123372992	+	675.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001037877)	promoter-TSS (NM_001037877)	-819.0	NM_001359076	66855.0	Mm.178818	NM_025804	ENSMUSG00000001472	Tcf25	1100001J13Rik|1810041K11Rik|D8Ertd325e|Nulp1|mKIAA1049	transcription factor 25 (basic helix-loop-helix)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-59613104-4	chr2	59612997	59613197	+	864.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198294, intron 1 of 26)	intron (NM_198294, intron 1 of 26)	1055.0	NM_198294	66860.0	Mm.27917	NM_198294	ENSMUSG00000035168	Tanc1	1200003E16Rik|Tanc|mKIAA1728	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-46831503-1	chr14	46831403	46831603	+	631.5	f0_balb.idr	promoter-TSS (NM_001360455)	promoter-TSS (NM_001360455)	-631.0	NM_001360454	68755.0	Mm.343809	NM_026832	ENSMUSG00000055128	Cgrrf1	1110038G02Rik|1810009H17Rik|CGR19	cell growth regulator with ring finger domain 1	protein-coding	0.539398536901829	0.782470931792343	0.919222018016465	0.552501622431774	1.17108987584564	1.2488633332702	1.40154062230024	0.553871096038375	2.28943217430927	0.160545482441736	0.620466695037653
Merged-chr6-30326235-3	chr6	30326135	30326335	+	864.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21696.0	NM_001169576	22214.0	Mm.332967	NM_009459	ENSMUSG00000039159	Ube2h	1500009C23Rik|AI181839|AI326965|AI462483|AW227540|E2-20K|Gid3|N28148|Ubc8	ubiquitin-conjugating enzyme E2H	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-118141107-4	chr6	118141012	118141212	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1972.0	NM_030165	78752.0	Mm.300317	NM_030165	ENSMUSG00000042042	Csgalnact2	4632415D10Rik|Galnact2	chondroitin sulfate N-acetylgalactosaminyltransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-77961217-2	chr18	77961117	77961317	+	870.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001195633, intron 10 of 43)	MTC|LTR|ERVL-MaLR	22750.0	NM_001195633	100502841.0	Mm.297782	NM_001195633	ENSMUSG00000039840	Epg5	4732475F16|5430411K18Rik|AI661957|AW456499|mKIAA1632	ectopic P-granules autophagy protein 5 homolog (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-82702888-4	chr6	82702725	82702925	+	997.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49960.0	NM_025882	66979.0	Mm.195753	NM_025882	ENSMUSG00000030042	Pole4	2400007P05Rik|5830430F06Rik	polymerase (DNA-directed), epsilon 4 (p12 subunit)	protein-coding	4.56036073461145	5.06170672073342	4.69384136954441	5.16178622733359	4.8771390373653	4.43170862386595	4.77399686557232	5.45309733592676	0.0653271677358981	0.854190157710922	0.998431161219273
Merged-chr1-37904979-4	chr1	37904861	37905061	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001033427)	TTS (NM_001033427)	11532.0	NM_001033427	332427.0	Mm.332981	NM_001033427	ENSMUSG00000061584	Lyg2	Gm776	lysozyme G-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34846382-2	chr17	34846282	34846482	+	562.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021337, intron 10 of 27)	intron (NM_021337, intron 10 of 27)	-1215.0	NR_105936	102465586.0		NR_105936	ENSMUSG00000098460	Mir6970	Gm27589|mmu-mir-6970	microRNA 6970	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-6416677-4	chr11	6416575	6416775	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008907, intron 1 of 4)	intron (NM_008907, intron 1 of 4)	805.0	NM_008907	268373.0	Mm.5246	NM_008907	ENSMUSG00000071866	Ppia	2700098C05|Cphn|CyP-18|CypA	peptidylprolyl isomerase A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-65864848-2	chr5	65864748	65864948	+	983.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081105, intron 1 of 2)	intron (NM_001081105, intron 1 of 2)	1279.0	NM_001081105	74734.0	Mm.20323	NM_001081105	ENSMUSG00000029204	Rhoh	5830400A04Rik|AU019774|Arhh	ras homolog family member H	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105341090-2	chr8	105340990	105341190	+	587.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177699, intron 1 of 21)	intron (NM_177699, intron 1 of 21)	6880.0	NM_177699	234686.0	Mm.87724	NM_177699	ENSMUSG00000014778	Fhod1	BC017144|FHOS|FHOS1	formin homology 2 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134140826-2	chr6	134140720	134140920	+	573.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 3 of 8)	intron (NM_001303102, intron 3 of 8)	105120.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76868868-1	chr15	76868768	76868968	+	796.0	f0_balb.idr	intron (NM_001007568, intron 3 of 3)	intron (NM_001007568, intron 3 of 3)	2567.0	NM_001007568	71591.0	Mm.38195	NM_001007568	ENSMUSG00000022526	Zfp251	9130001M19Rik|AV339307	zinc finger protein 251	protein-coding	1.61949106551401	0.932380677475713	1.14970353783333	1.12030288646357	1.63470611178782	0.936888963517424	2.33929820368227	2.02625025080866	1.93071725950403	0.123244065985209	0.550378028668932
Merged-chr17-32551149-2	chr17	32551049	32551249	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_024442, exon 13 of 13)	exon (NM_024442, exon 13 of 13)	14592.0	NM_001356303	70101.0	Mm.30504	NM_024442	ENSMUSG00000048440	Cyp4f16	2310021J05Rik|AI746515	cytochrome P450, family 4, subfamily f, polypeptide 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-9885138-4	chr3	9884928	9885128	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51349.0	NM_001195031	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	6.27233813986682	6.30342569584043	6.40838564412674	6.07153311561034	5.84368276756865	6.09195603775542	6.17382502311209	5.65966792045318	-0.346559439533424	0.124226056671056	0.552249014968455
Merged-chr6-30401713-5	chr6	30401562	30401762	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311087)	promoter-TSS (NM_001311087)	-193.0	NM_029742	76788.0	Mm.277308	NM_029742	ENSMUSG00000029775	Klhdc10	2410127E18Rik|AI593221|mKIAA0265	kelch domain containing 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-87314835-4	chr17	87314730	87314930	+	795.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028639, intron 5 of 19)	intron (NM_028639, intron 5 of 19)	31944.0	NM_028639	225049.0	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36923209-3	chr1	36923102	36923302	+	838.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018872, intron 1 of 40)	B3|SINE|B2	16325.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43899419-1	chr4	43899319	43899519	+	610.0	f1_c57bl6.idr	intron (NM_016678, intron 5 of 20)	intron (NM_016678, intron 5 of 20)	23889.0	NM_016678	53614.0	Mm.331573	NM_016678	ENSMUSG00000028476	Reck	St15|mRECK	reversion-inducing-cysteine-rich protein with kazal motifs	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-9944113-4	chr1	9943965	9944165	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_024067)	promoter-TSS (NR_024067)	53.0	NR_024067	73824.0	Mm.28311	NR_024067	ENSMUSG00000098234	Snhg6	1110008H02Rik	small nucleolar RNA host gene 6	ncRNA	5.68647175091224	5.62826862711286	5.65504353232315	5.21650592664722	5.29568334770216	4.80866443511176	5.89981335975571	5.46937490639368	-0.152166468471979	0.609586249861231	0.974992433107985
Merged-chr9-121995933-3	chr9	121995778	121995978	+	909.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_153540, exon 1 of 2)	5' UTR (NM_153540, exon 1 of 2)	148.0	NM_001289559	215494.0	Mm.402151	NM_153540	ENSMUSG00000066235	Pomgnt2	Ago61|C85492|Gtdc2	protein O-linked mannose beta 1,4-N-acetylglucosaminyltransferase 2	protein-coding	-1.13129152895393	-0.760314410582534	-1.11939102144509	-1.12796902636669	-1.1307976245896	-0.753160406462703	-1.11683883442949	-1.12699414366937	0.0387695613834025	0.99058038935327	1
Merged-chr7-29179510-4	chr7	29179413	29179613	+	925.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026545, intron 1 of 6)	intron (NM_026545, intron 1 of 6)	1160.0	NM_026545	57296.0	Mm.273152	NM_026545	ENSMUSG00000030591	Psmd8	6720456J22Rik|AA407360|AL033291|AL033322|AL033323|C76433	proteasome (prosome, macropain) 26S subunit, non-ATPase, 8	protein-coding	4.74337634355274	4.61070779993966	3.92356004882015	4.61514819167217	4.30973398129242	4.73808548877798	4.39697508615086	2.57226024635701	-0.390647785646481	0.427554604941989	0.902392427013133
Merged-chr10-67234241-2	chr10	67234141	67234341	+	956.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_207221, intron 13 of 25)	L1_Mur2|LINE|L1	48491.0	NM_001242396	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-14038788-2	chr13	14038688	14038888	+	885.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178337, intron 1 of 16)	Lx|LINE|L1	850.0	NR_130788	70430.0	Mm.260209	NM_178337	ENSMUSG00000039233	Tbce	2610206D02Rik|C530005D02Rik|pmn	tubulin-specific chaperone E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-154189121-3	chr4	154189026	154189226	+	961.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162977, intron 3 of 36)	intron (NM_001162977, intron 3 of 36)	18413.0	NM_001162977	230971.0	Mm.275216	NM_172273	ENSMUSG00000057751	Megf6	2600001P17Rik|Egfl3	multiple EGF-like-domains 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131979846-4	chr1	131979744	131979944	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177628, intron 4 of 4)	intron (NM_001177628, intron 4 of 4)	9235.0	NM_145977	212980.0	Mm.200307	NM_145977	ENSMUSG00000026435	Slc45a3	2210413P12Rik|AU023994|AU043764|IPCA-6|PRST|Pcanap6	solute carrier family 45, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-60757603-2	chr17	60757503	60757703	+	605.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2B2|LTR|ERVL	-1744281.0	NM_026497	67993.0	Mm.36507	NM_026497	ENSMUSG00000024228	Nudt12	0610016O18Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-125460901-1	chr8	125460801	125461001	+	605.0	f1_c57bl6.idr	intron (NM_001357372, intron 10 of 21)	intron (NM_001357372, intron 10 of 21)	31932.0	NM_001081337	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	-0.953852725537661	-0.938954416352047	-0.948469824706124	-0.536623461716514	-0.582072368205537	-0.936410107061028	-0.947886214382756	-0.950144718708725	-0.189260031779864	0.952524681432003	1
Merged-chr2-152346933-3	chr2	152346851	152347051	+	873.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033505, intron 1 of 4)	MER113|DNA|hAT-Charlie	1282.0	NR_033505	791417.0	Mm.451219	NR_033505	ENSMUSG00000068062	Gm14164	-	predicted gene 14164	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-119103149-4	chr9	119103046	119103246	+	972.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177117, intron 1 of 36)	intron (NM_177117, intron 1 of 36)	668.0	NM_177117	320256.0	Mm.110648	NM_177117	ENSMUSG00000038060	Dlec1	D630005C06Rik	deleted in lung and esophageal cancer 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-40971458-4	chr13	40971361	40971561	+	981.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155347, intron 1 of 4)	intron (NR_155347, intron 1 of 4)	-29549.0	NM_026550	68083.0	Mm.24789	NM_026550	ENSMUSG00000038683	Pak1ip1	5830431I15Rik|5930415H02Rik|AA419825|AI314040|AW556169|Gdpd1|PIP1	PAK1 interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-82394099-2	chr3	82393999	82394199	+	847.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001081230, exon 14 of 14)	3' UTR (NM_001081230, exon 14 of 14)	35912.0	NM_001356457	213582.0	Mm.271269	NM_001081230	ENSMUSG00000033900	Map9	5033421J10Rik|5330427D05Rik|ASAP|Mtap9	microtubule-associated protein 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-108720178-2	chr6	108720078	108720278	+	666.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59244.0	NR_104577	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-149110082-2	chr2	149109982	149110182	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	-234570.0	NM_009976	13010.0	Mm.4263	NM_009976	ENSMUSG00000027447	Cst3	CysC	cystatin C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-107749448-2	chr7	107749348	107749548	+	717.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001163557)	TTS (NM_001163557)	8584.0	NM_001205227	320635.0	Mm.132828	NM_177216	ENSMUSG00000048065	Cyb5r2	D630003K02Rik|b5R.2	cytochrome b5 reductase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-42372424-4	chr13	42372322	42372522	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	70946.0	NM_010104	13614.0	Mm.14543	NM_010104	ENSMUSG00000021367	Edn1	ET-1|PPET1|preproET	endothelin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-99785414-4	chr6	99785300	99785500	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59008.0	NM_001037539	50501.0	Mm.87365	NM_015768	ENSMUSG00000030069	Prok2	Bv8|PK2|Prok1	prokineticin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-75461960-2	chr17	75461860	75462060	+	544.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166493, intron 1 of 16)	CT-rich|Low_complexity|Low_complexity	-3578.0	NM_001360103	240168.0	Mm.329203	NM_207246	ENSMUSG00000071042	Rasgrp3	BC066069|Gm327	RAS, guanyl releasing protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-8590172-2	chr11	8590072	8590272	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 3 of 30)	intron (NM_001083587, intron 3 of 30)	74363.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-23385228-2	chr1	23385128	23385328	+	998.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-2053.0	NM_001081079	70155.0	Mm.28013	NM_001081079	ENSMUSG00000026158	Ogfrl1	2210417C17Rik	opioid growth factor receptor-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-98330493-1	chr5	98330393	98330593	+	677.5	f0_balb.idr	intron (NM_001024614, intron 1 of 5)	intron (NM_001024614, intron 1 of 5)	1189.0	NM_001024614	75784.0	Mm.443240	NM_001024614	ENSMUSG00000057816	1700007G11Rik	4930428O21Rik	RIKEN cDNA 1700007G11 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153092361-3	chr2	153092261	153092461	+	797.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16107.0	NM_001172117	15162.0	Mm.715	NM_010407	ENSMUSG00000003283	Hck	AI849071|Bmk	hemopoietic cell kinase	protein-coding	1.46231516535431	1.61162644477553	2.07338275244451	1.91277821152572	1.47212699468085	1.6220880355038	2.0898382945862	1.9225060000586	0.036921451398809	0.971118918516137	0.998431161219273
Merged-chr12-32698911-4	chr12	32698732	32698932	+	991.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-121503.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-114922675-5	chr6	114922703	114922903	+	912.599976	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177683)	promoter-TSS (NM_177683)	-982.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25765265-4	chr7	25765166	25765366	+	999.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009465, intron 14 of 19)	intron (NM_009465, intron 14 of 19)	-10507.0	NM_178089	232989.0	Mm.254223	NM_144922	ENSMUSG00000040725	Hnrnpul1	E130317O14Rik|E1B-AP5|E1BAP5|Hnrnpul|Hnrpul1	heterogeneous nuclear ribonucleoprotein U-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-84538160-4	chr2	84538069	84538269	+	946.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31296.0	NR_046046	672763.0	Mm.491046	NR_046046	ENSMUSG00000087362	Gm13710	-	predicted gene 13710	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-155206647-3	chr4	155206533	155206733	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011385, intron 1 of 6)	URR1B|DNA|hAT-Charlie	15902.0	NM_011385	20481.0	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	1.5789739519228	1.52783996060597	1.83641193078102	2.03762192067418	0.8724389912625	0.928498756012698	0.910757325070925	1.6837243382919	-2.18480416079525	0.0997747607795335	0.491284916484067
Merged-chr4-147242250-2	chr4	147242150	147242350	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039209, intron 1 of 2)	Lx3B|LINE|L1	66384.0	NM_001039209	195531.0	Mm.270762	NM_001039209	ENSMUSG00000078496	Zfp982	Gm13152	zinc finger protein 982	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97626500-1	chr11	97626400	97626600	+	744.0	f1_balb.idr	TTS (NM_175332)	TTS (NM_175332)	3216.0	NM_175332	103551.0	Mm.24506	NM_175332	ENSMUSG00000043439	Epop	AA409164|AI413509|AW539173|E13|E130012A19Rik|esPRC2p48	elongin BC and polycomb repressive complex 2 associated protein	protein-coding	-0.638381199328103	-0.764365559429191	-0.767183422065532	-0.769347170139276	-0.317323592966262	-0.76372830942625	-0.766563212656347	-0.477510554532251	2.13865286545355	0.443874764403295	1
Merged-chr8-71308765-4	chr8	71308604	71308804	+	785.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142322, intron 2 of 39)	intron (NM_001142322, intron 2 of 39)	35990.0	NM_001142323	17925.0	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	1.88930938941876	2.03851314506732	1.02899242596199	2.08611065731288	1.60874687365185	1.29843291528124	1.03338974316943	1.80985723416253	-1.09453595351238	0.361007070640366	0.856837565551048
Merged-chr11-101087970-2	chr11	101087870	101088070	+	960.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159384, intron 2 of 6)	intron (NM_001159384, intron 2 of 6)	680.0	NM_001159384	21428.0	Mm.628	NM_011550	ENSMUSG00000017801	Mlx	Tcfl4|Tf4|bHLHd13	MAX-like protein X	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-95801421-4	chr15	95801317	95801517	+	923.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 1 of 19)	intron (NM_175344, intron 1 of 19)	10574.0	NM_001253813	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-23526581-4	chr13	23526490	23526690	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4454.0	NM_153173	69386.0	Mm.158272	NM_153173	ENSMUSG00000060981	Hist1h4h	1700024H08Rik	histone cluster 1, H4h	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-181367004-1	chr2	181366904	181367104	+	804.0	f1_c57bl6.idr	intron (NM_001048148, intron 1 of 5)	intron (NM_001048148, intron 1 of 5)	1581.0	NM_001048148	229007.0	Mm.87720	NM_144894	ENSMUSG00000027582	Zgpat	1500006I01Rik|BC021513	zinc finger, CCCH-type with G patch domain	protein-coding	-0.0728842508324915	0.134587027676295	-0.294045864416316	-0.296410314233842	-0.299714228701825	0.142586964286298	-0.293365916355703	-0.295998828961	-0.524431037253044	0.834024566741004	1
Merged-chr3-90246311-2	chr3	90246211	90246411	+	736.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1881.0	NM_013901	30791.0	Mm.294709	NM_013901	ENSMUSG00000052310	Slc39a1	Zip1|Zirtl	solute carrier family 39 (zinc transporter), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26955756-3	chr17	26955653	26955853	+	875.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001281491, intron 7 of 18)	intron (NM_001281491, intron 7 of 18)	-7634.0	NR_037244	100526534.0		NR_037244	ENSMUSG00000093118	Mir3083	mir-3083|mmu-mir-3083	microRNA 3083	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-116330110-2	chr7	116330010	116330210	+	867.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4080.0	NM_026533	68052.0	Mm.14798	NM_026533	ENSMUSG00000090862	Rps13	2700063M04Rik	ribosomal protein S13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-38085955-7	chr7	38085862	38086062	+	883.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21528.0	NM_007633	12447.0	Mm.16110	NM_007633	ENSMUSG00000002068	Ccne1	AW538188|CycE1	cyclin E1	protein-coding	2.03133803113489	1.5992905509417	1.92517957987371	2.75378637299379	2.0480427078983	2.71787705368074	1.93972513114224	1.88236077646341	0.0735062713223778	0.936549380747041	0.998431161219273
Merged-chr18-61403444-2	chr18	61403336	61403536	+	901.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	-3005.0	NM_133249	170826.0	Mm.415302	NM_133249	ENSMUSG00000033871	Ppargc1b	4631412G21Rik|Perc	peroxisome proliferative activated receptor, gamma, coactivator 1 beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-69647179-4	chr2	69647082	69647282	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028284)	promoter-TSS (NM_028284)	-73.0	NM_028284	72569.0	Mm.252136	NM_028284	ENSMUSG00000063145	Bbs5	1700049I01Rik|2700023J09Rik	Bardet-Biedl syndrome 5 (human)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-56384427-3	chr6	56384322	56384522	+	774.299988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14788.0	NM_001159955	18575.0	Mm.5145	NM_011054	ENSMUSG00000004347	Pde1c	-	phosphodiesterase 1C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165300562-3	chr2	165300449	165300649	+	952.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302754, intron 9 of 19)	intron (NM_001302754, intron 9 of 19)	-12711.0	NR_045544	228875.0	Mm.21184	NM_144893	ENSMUSG00000017664	Slc35c2	C85957|CGI-15|D2Wsu58e|Ovcov1	solute carrier family 35, member C2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-100575135-2	chr15	100575035	100575235	+	736.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_010127)	TTS (NM_010127)	11230.0	NM_010127	19009.0	Mm.28825	NM_010127	ENSMUSG00000009739	Pou6f1	2310038G18Rik|C79593|Emb|cns-1	POU domain, class 6, transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-144040817-2	chr5	144040717	144040917	+	861.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_033039, intron 1 of 4)	intron (NM_033039, intron 1 of 4)	9792.0	NM_033039	18261.0	Mm.270533	NM_033039	ENSMUSG00000029618	Ocm	-	oncomodulin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90478780-4	chr2	90478675	90478875	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	399.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	4.2808540682682	4.16634874342041	3.73877573305394	4.04590881177448	3.69040491053844	3.89690931914063	4.50273733700959	4.42278430444783	0.128260574396998	0.771856215861714	0.998431161219273
Merged-chr2-152779422-2	chr2	152779322	152779522	+	631.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289739, intron 2 of 4)	L2|LINE|L2	25249.0	NM_053091	84682.0	Mm.196668	NM_053091	ENSMUSG00000009876	Cox4i2	Cox4b|CoxIV-2	cytochrome c oxidase subunit 4I2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69408261-2	chr11	69408161	69408361	+	805.25	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001017426, exon 3 of 23)	5' UTR (NM_001017426, exon 3 of 23)	5414.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	0.380439277020966	0.594083171766557	0.260320699312152	0.650235737145329	0.696473516029861	0.448842722970573	0.261523146099946	0.541246883720577	0.122760394855898	0.944164027732928	1
Merged-chr15-66968381-2	chr15	66968281	66968481	+	867.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008681, intron 1 of 15)	intron (NM_008681, intron 1 of 15)	1260.0	NM_008681	17988.0	Mm.30837	NM_008681	ENSMUSG00000005125	Ndrg1	CAP43|CMT4D|DRG1|HMSNL|NMSL|Ndr1|Ndrl|PROXY1|RTP|TDD5	N-myc downstream regulated gene 1	protein-coding	-0.162909686144357	-0.393533234646202	-0.396862118982017	-0.399413902943801	-0.156984629618755	-0.213138720342452	0.0272752076293499	-0.398969153477194	1.73547346783989	0.475795226071272	1
Merged-chr5-123145435-3	chr5	123145345	123145545	+	873.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040398, intron 4 of 16)	intron (NM_001040398, intron 4 of 16)	3252.0	NM_001040398	208043.0	Mm.250391	NM_177581	ENSMUSG00000038384	Setd1b	AA516740|BC035291|KMT2G|mKIAA1076	SET domain containing 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-26910725-4	chr2	26910633	26910833	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013721)	promoter-TSS (NM_013721)	-74.0	NM_013721	27176.0	Mm.328601	NM_013721	ENSMUSG00000062647	Rpl7a	Surf3	ribosomal protein L7A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-66363505-4	chr5	66363431	66363631	+	927.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310626, intron 9 of 15)	intron (NM_001310626, intron 9 of 15)	-25866.0	NM_001201416	11787.0	Mm.5159	NM_009686	ENSMUSG00000029207	Apbb2	2310007D03Rik|FE65L1|Rirl1|TR2L|Zfra	amyloid beta (A4) precursor protein-binding, family B, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-60989439-2	chr14	60989339	60989539	+	931.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013869, intron 5 of 9)	intron (NM_013869, intron 5 of 9)	48548.0	NM_001164155	29820.0	Mm.281356	NM_013869	ENSMUSG00000060548	Tnfrsf19	AL023044|AW123854|TAJ|TAJ-ALPHA|TRADE|Troy	tumor necrosis factor receptor superfamily, member 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141635638-2	chr7	141635538	141635738	+	584.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001330001, intron 32 of 33)	intron (NM_001330001, intron 32 of 33)	14937.0	NR_106030	102466798.0		NR_106030	ENSMUSG00000098759	Mir7063	Gm27654|mmu-mir-7063	microRNA 7063	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71252050-1	chr17	71251950	71252150	+	703.5	f1_balb.idr	TTS (NM_001357336)	TTS (NM_001357336)	47396.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-64128267-2	chr13	64128167	64128367	+	543.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001321, intron 1 of 11)	intron (NM_001001321, intron 1 of 11)	1063.0	NM_001001321	70484.0	Mm.133731	NM_001001321	ENSMUSG00000033114	Slc35d2	5730408I21Rik|SQV7L|UGTrel8|hfrc|mUGTrel8	solute carrier family 35, member D2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-79357177-4	chr15	79357087	79357287	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304832, intron 2 of 2)	intron (NM_001304832, intron 2 of 2)	8785.0	NM_001304832	17133.0	Mm.86646	NM_010755	ENSMUSG00000042622	Maff	-	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein F (avian)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-70869677-2	chr9	70869577	70869777	+	679.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001324473, intron 1 of 8)	intron (NM_001324473, intron 1 of 8)	65131.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-19698912-2	chr13	19698762	19698962	+	751.099976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1102.0	NM_181591	73412.0	Mm.279939	NM_181591	ENSMUSG00000041138	Nme8	1700056P15Rik|Sptrx-2|Txndc3	NME/NM23 family member 8	protein-coding	1.68056431579098	1.56247162532388	0.728029317394237	1.33821512133742	1.37221288683425	0.972850028080602	0.730949444872236	0.719534415893991	-1.62728181652245	0.272653554735525	0.77580174301585
Merged-chr12-36381002-4	chr12	36380905	36381105	+	923.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289502)	promoter-TSS (NM_001289502)	-445.0	NM_001289504	75847.0	Mm.261764	NM_178629	ENSMUSG00000043153	Ispd	4930579E17Rik|AV040780	isoprenoid synthase domain containing	protein-coding	0.482164563773234	1.49602848374438	1.31928432615847	1.5466929678142	0.48474863928169	0.525085292437654	0.512254483392275	0.711321053385687	-4.02015875762458	0.0191524977006045	0.174702230672974
Merged-chr9-40548048-3	chr9	40547938	40548138	+	857.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16655.0	NM_001357617	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	1.88631246766309	2.42103216352952	2.46036620979645	3.10997142173369	2.17113043161113	2.43921383073092	1.3979497788473	2.86000993099658	-0.46500358695251	0.60263170127296	0.973565005745828
Merged-chr11-20248498-4	chr11	20248428	20248628	+	816.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172260, intron 1 of 6)	intron (NM_172260, intron 1 of 6)	896.0	NM_172260	216543.0	Mm.260314	NM_172260	ENSMUSG00000044066	Cep68	6030463E10Rik|AI481761|BC027174|Kiaa0582	centrosomal protein 68	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-13447238-2	chr16	13447138	13447338	+	635.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2285.0	NR_030549	100124432.0		NR_030549	ENSMUSG00000076972	Mir193b	Mir193|Mirn193b|mir-193b	microRNA 193b	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-77520783-4	chr11	77520706	77520906	+	990.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_026185)	TTS (NM_026185)	5689.0	NM_026185	67477.0	Mm.432526	NM_026185	ENSMUSG00000000686	Abhd15	1300007F04Rik	abhydrolase domain containing 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-122753586-3	chr10	122753476	122753676	+	882.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110218, intron 1 of 9)	intron (NM_001110218, intron 1 of 9)	74261.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-90876279-4	chr5	90876196	90876396	+	862.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14949.0	NM_008176	14825.0	Mm.21013	NM_008176	ENSMUSG00000029380	Cxcl1	Fsp|Gro1|KC|Mgsa|N51|Scyb1|gro	chemokine (C-X-C motif) ligand 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-118243764-4	chr7	118243697	118243897	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027879)	promoter-TSS (NR_027879)	-110.0	NR_027879	67745.0	Mm.483404	NM_183267	ENSMUSG00000055159	4930583K01Rik	-	RIKEN cDNA 4930583K01 gene	ncRNA	6.11028350656596	5.53425188740612	5.27411527695889	6.06410581008434	6.16248833489654	5.82916447319419	5.2048074344233	5.26313472385899	-0.132729826624073	0.663464332574025	0.991657818949578
Merged-chr2-170169347-3	chr2	170169252	170169452	+	803.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26677.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117393025-2	chr10	117392925	117393125	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16052.0	NM_001310609	432508.0	Mm.478881	NM_001013391	ENSMUSG00000055531	Cpsf6	4733401N12Rik|AI256641|CFIM|CFIM68|HPBRII-4|HPBRII-7	cleavage and polyadenylation specific factor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-29180568-4	chr19	29180467	29180667	+	829.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45288.0	NR_029778	724062.0		NR_029778	ENSMUSG00000065556	Mir101b	Mirn101b|mir-101b	microRNA 101b	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-135700814-4	chr1	135700759	135700959	+	845.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19204.0	NM_001360782	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-19099843-6	chr10	19099701	19099901	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41948.0	NR_038021	100504265.0	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-132898274-2	chr7	132898174	132898374	+	996.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-32868.0	NM_207302	360216.0	Mm.389984	NM_207302	ENSMUSG00000030967	Zranb1	9330160G10Rik|D7Wsu87e|Gm1956|Trabid	zinc finger, RAN-binding domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-92867462-4	chr16	92867365	92867565	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1L|LTR|ERVL-MaLR	-41391.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-29679179-2	chr2	29679079	29679279	+	744.666626	f1_balb.idr|f1_c57bl6.idr	exon (NM_001039087, exon 2 of 26)	exon (NM_001039087, exon 2 of 26)	59459.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-51833039-4	chr17	51832908	51833108	+	940.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009122)	promoter-TSS (NM_009122)	282.0	NM_001163632	20230.0	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-82845510-4	chr11	82845413	82845613	+	936.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164570, intron 1 of 7)	intron (NM_001164570, intron 1 of 7)	-16470.0	NM_026097	67338.0	Mm.341608	NM_026097	ENSMUSG00000020696	Rffl	1700051E09Rik|4930516L10Rik|BG080975|Carp2	ring finger and FYVE like domain containing protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-43420513-3	chr6	43420424	43420624	+	870.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013861, intron 8 of 8)	intron (NM_013861, intron 8 of 8)	-21905.0	NR_045988	319812.0	Mm.446393	NR_045988		9430018G01Rik	-	RIKEN cDNA 9430018G01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129588601-2	chr2	129588497	129588697	+	585.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4242.0	NM_001291020	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-6874149-2	chr4	6874049	6874249	+	677.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145711, intron 1 of 8)	intron (NM_145711, intron 1 of 8)	116574.0	NM_145711	252838.0	Mm.435828	NM_145711	ENSMUSG00000041272	Tox	1700007F02Rik	thymocyte selection-associated high mobility group box	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-103996699-4	chr9	103996616	103996816	+	742.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5828.0	NM_028721	74025.0	Mm.479273	NM_028721	ENSMUSG00000032558	Nphp3	3632410F03Rik|AI550417|C230078J01|D330020E01Rik|pcy	nephronophthisis 3 (adolescent)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-22118271-4	chr9	22118185	22118385	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1090.0	NM_001357312	66126.0	Mm.29801	NM_170777	ENSMUSG00000013822	Elof1	1110011K10Rik	ELF1 homolog, elongation factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-74872877-2	chr17	74872754	74872954	+	788.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-132675.0	NM_019919	268977.0	Mm.269747	NM_019919	ENSMUSG00000001870	Ltbp1	9430031G15Rik|9830146M04|Ltbp-1|Ltbp1L|TGF-beta1-BP-1|Tgfb|b2b1000Clo	latent transforming growth factor beta binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-25611105-2	chr14	25611005	25611205	+	598.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 6 of 23)	intron (NM_183208, intron 6 of 23)	7592.0	NM_001309430	100188919.0	Mm.473810	NM_001309430		Gm45915	Israa	predicted gene, 45915	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-56254725-3	chr19	56254677	56254877	+	737.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33135.0	NM_001329936	226243.0	Mm.25791	NM_146101	ENSMUSG00000025075	Habp2	AI035669|FSAP|HABP|HGFAL|PHBP	hyaluronic acid binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-32353039-4	chr4	32352933	32353133	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64402.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-41587789-4	chr3	41587679	41587879	+	962.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001130184, intron 2 of 10)	intron (NM_001130184, intron 2 of 10)	22899.0	NM_001130186	269424.0	Mm.286285	NM_172303	ENSMUSG00000025764	Jade1	AU041499|D530048A03Rik|Phf17|mKIAA1807	jade family PHD finger 1	protein-coding	1.1053369545089	0.594577843697056	0.583248841701543	1.47475531004377	1.11711712034957	0.597109213125474	0.585761794969516	1.48491603113476	0.0329832565854368	0.984203180661419	0.998431161219273
Merged-chr5-29993793-4	chr5	29993692	29993892	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19322.0	NM_001314054	16193.0	Mm.1019	NM_031168	ENSMUSG00000025746	Il6	Il-6	interleukin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131020312-1	chr1	131020212	131020412	+	851.0	f0_c57.idr	intron (NM_010548, intron 1 of 4)	intron (NM_010548, intron 1 of 4)	467.0	NM_010548	16153.0	Mm.874	NM_010548	ENSMUSG00000016529	Il10	CSIF|Il-10	interleukin 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-32747841-4	chr5	32747730	32747930	+	892.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177298, intron 3 of 7)	LFSINE_Vert|SINE|tRNA	-1488.0	NM_001347332	320951.0	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-96461024-4	chr15	96460943	96461143	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028148)	promoter-TSS (NM_028148)	-200.0	NM_028148	72193.0	Mm.324474	NM_028148	ENSMUSG00000033228	Scaf11	1110061H03Rik|2610510E10Rik|AI462454|CASP11|SIP1|SRRP129|Sfrs2ip|Srsf2ip|mKIAA3013	SR-related CTD-associated factor 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-46365142-4	chr18	46365050	46365250	+	853.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-53222.0	NM_001160399	240261.0	Mm.329416	NM_001160399	ENSMUSG00000071855	Ccdc112	8430438M01Rik|AW108467	coiled-coil domain containing 112	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124833093-2	chr6	124832993	124833193	+	765.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_013538, exon 6 of 6)	exon (NM_013538, exon 6 of 6)	2917.0	NM_013538	14793.0	Mm.285723	NM_013538	ENSMUSG00000023505	Cdca3	2410005A12Rik|C8|Grcc8|Tome-1	cell division cycle associated 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-54055636-3	chr13	54055543	54055743	+	861.138855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010076)	promoter-TSS (NM_010076)	15.0	NM_010076	13488.0	Mm.54161	NM_010076	ENSMUSG00000021478	Drd1	C030036C15Rik|Drd-1|Drd1a|Gpcr15	dopamine receptor D1	protein-coding	0.185412048562524	-0.0575867766588276	0.588744882345353	0.0928710984243296	-0.071432659068119	-0.0564926540942923	-0.061365995983779	0.351980779100436	-1.4067616390973	0.517808051016743	1
Merged-chr8-125600855-1	chr8	125600755	125600955	+	844.0	f1_c57bl6.idr	intron (NR_015535, intron 2 of 2)	intron (NR_015535, intron 2 of 2)	16217.0	NR_015535	75930.0	Mm.195663	NR_015535	ENSMUSG00000110629	4930567H12Rik	4930579P07Rik	RIKEN cDNA 4930567H12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-92700310-4	chr7	92700135	92700335	+	941.9404910000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30323.0	NM_029078	74737.0	Mm.288645	NM_029078	ENSMUSG00000041328	Pcf11	2500001H09Rik|5730417B17Rik|C77803	PCF11 cleavage and polyadenylation factor subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-27231834-4	chr7	27231734	27231934	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-1179.0	NM_133770	76889.0	Mm.124728	NM_133770	ENSMUSG00000003762	Coq8b	0610012P18Rik|Adck4	coenzyme Q8B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-23709959-4	chr13	23709865	23710065	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010424, intron 1 of 5)	MLTR14|LTR|ERV1	889.0	NM_001347493	15216.0	Mm.2681	NM_010424	ENSMUSG00000006611	Hfe	MR2	hemochromatosis	protein-coding	1.70449222113685	1.67815971428773	2.69707824847796	1.95287979999974	2.33587802355185	2.5071557631023	2.53097404340817	2.63502119131692	0.967603441880662	0.264038573402536	0.766188681961536
Merged-chr4-131850402-2	chr4	131850302	131850502	+	826.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_025297, intron 1 of 9)	MIR|SINE|MIR	6931.0	NM_025297	26922.0	Mm.192706	NM_025297	ENSMUSG00000028910	Mecr	AI195831|NRBF-1|Nrbf1	mitochondrial trans-2-enoyl-CoA reductase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-94997136-4	chr3	94997033	94997233	+	959.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293715, intron 8 of 11)	intron (NM_001293715, intron 8 of 11)	-7035.0	NR_105980	102465613.0		NR_105980	ENSMUSG00000099033	Mir7013	Gm27488|mmu-mir-7013	microRNA 7013	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-11234439-4	chr19	11234350	11234550	+	998.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045317, intron 1 of 2)	intron (NR_045317, intron 1 of 2)	31701.0	NM_007641	12482.0	Mm.4046	NM_007641	ENSMUSG00000024673	Ms4a1	AA960661|Cd20|Ly-44|Ms4a2	membrane-spanning 4-domains, subfamily A, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-49172737-2	chr13	49172637	49172837	+	557.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14810.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28080671-4	chr17	28080578	28080778	+	847.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013687)	promoter-TSS (NM_013687)	-39.0	NM_001085555	21463.0	Mm.29758	NM_013687	ENSMUSG00000062859	Tcp11	D17Ken1|Tcp-11	t-complex protein 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-80992137-3	chr8	80992037	80992237	+	774.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027554, intron 6 of 9)	intron (NM_027554, intron 6 of 9)	22769.0	NM_027554	74841.0	Mm.246018	NM_027554	ENSMUSG00000038250	Usp38	4631402N15Rik|4833420O05Rik|AA536967|AU044701|AW544820|mKIAA1891	ubiquitin specific peptidase 38	protein-coding	3.48597532997209	3.01487031297978	3.44731035768648	3.54820127816495	2.33119683526336	3.34369042939088	2.36836497817909	2.72771659258684	-1.10886303499484	0.0850570131028353	0.448020902351155
Merged-chr12-100531072-4	chr12	100530955	100531155	+	975.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-10233.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-72476176-4	chr2	72476053	72476253	+	974.044067	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025866)	promoter-TSS (NM_025866)	-66.0	NM_025866	66953.0	Mm.270676	NM_025866	ENSMUSG00000055612	Cdca7	2310021G01Rik|AU044109|JPO1	cell division cycle associated 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-144677598-2	chr6	144677498	144677698	+	568.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_040519, intron 1 of 2)	intron (NR_040519, intron 1 of 2)	4730.0	NR_040519	66760.0	Mm.233631	NR_040519	ENSMUSG00000085785	Sox5os3	4933425H06Rik	SRY (sex determining region Y)-box 5, opposite strand 3	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133754118-1	chr4	133754018	133754218	+	1000.0	f0_balb.idr	promoter-TSS (NM_001080819)	promoter-TSS (NM_001080819)	-507.0	NM_001080819	93760.0	Mm.22478	NM_001080819	ENSMUSG00000007880	Arid1a	1110030E03Rik|BAF250a|Osa1|Smarcf1	AT rich interactive domain 1A (SWI-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-16007997-4	chr3	16007897	16008097	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1665.0	NM_001081687	381484.0	Mm.217376	NM_001081687	ENSMUSG00000078780	Gm5150	-	predicted gene 5150	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-20141085-4	chr16	20140971	20141171	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145931)	promoter-TSS (NM_001145931)	8.0	NM_001145930	208146.0	Mm.390895	NM_001033237	ENSMUSG00000041215	Yeats2	BC042768|mKIAA1197	YEATS domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-62664240-4	chr2	62664151	62664351	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145523)	promoter-TSS (NM_145523)	-76.0	NM_145523	227960.0	Mm.219877	NM_145523	ENSMUSG00000026893	Gca	5133401E04Rik|AI573844	grancalcin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-97774363-3	chr15	97774240	97774440	+	910.638916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6674.0	NM_001357630	223864.0	Mm.24028	NM_144850	ENSMUSG00000022469	Rapgef3	2310016P22Rik|9330170P05Rik|Epac|Epac1	Rap guanine nucleotide exchange factor (GEF) 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167918845-2	chr2	167918745	167918945	+	588.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16C|LTR|ERVL	-13482.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-117131028-2	chr4	117130928	117131128	+	629.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001313916, intron 9 of 14)	intron (NM_001313916, intron 9 of 14)	2935.0	NM_013807	12795.0	Mm.259022	NM_013807	ENSMUSG00000028680	Plk3	Cnk|Fnk|PLK-3|PRK	polo like kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-38517938-2	chr5	38517838	38518038	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15786.0	NM_145559	117591.0	Mm.260137	NM_145559	ENSMUSG00000005107	Slc2a9	Glut9|SLC2A9B|SLC2a9A	solute carrier family 2 (facilitated glucose transporter), member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-94941377-3	chr13	94941276	94941476	+	781.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34968.0	NM_172590	218460.0	Mm.33856	NM_172590	ENSMUSG00000042015	Wdr41	B830029I03Rik|MSTP048	WD repeat domain 41	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-77447410-2	chr11	77447310	77447510	+	636.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177710, intron 13 of 14)	intron (NM_177710, intron 13 of 14)	-16503.0	NM_139129	216961.0	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-52280039-4	chr14	52279941	52280141	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172601)	promoter-TSS (NM_172601)	-646.0	NM_172601	76338.0	Mm.32870	NM_172601	ENSMUSG00000022159	Rab2b	1500012D09Rik|4930528G15Rik|A230002G14|D530043M21Rik	RAB2B, member RAS oncogene family	protein-coding	5.13553006544576	4.87456986753294	4.67817289350144	4.80892163226552	5.01189427453542	5.5479099541324	4.39534176111498	3.85238224539427	-0.0530812206541684	0.894409480635056	0.998431161219273
Merged-chr4-105253310-2	chr4	105253210	105253410	+	767.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	95963.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-61987209-4	chr15	61987114	61987314	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177353, intron 1 of 2)	CpG	1873.0	NM_001177352	17869.0	Mm.2444	NM_010849	ENSMUSG00000022346	Myc	AU016757|Myc2|Niard|Nird|bHLHe39	myelocytomatosis oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-32172051-2	chr5	32171951	32172151	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35579.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-95647054-4	chr1	95646954	95647154	+	950.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159745, intron 3 of 3)	intron (NM_001159745, intron 3 of 3)	20540.0	NM_009183	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3578327-2	chr19	3578227	3578427	+	691.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2578.0	NM_028999	52036.0	Mm.284686	NM_028999	ENSMUSG00000024908	Ppp6r3	4930528G08Rik|9130026N02Rik|D19Bwg1430e|D19Ertd703e|Pp6r3|Ppcs3|Pptcs3|Sapl|Saps3|mKIAA1558	protein phosphatase 6, regulatory subunit 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70653915-5	chr11	70653819	70654019	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011072, intron 1 of 2)	CpG	731.0	NM_011072	18643.0	Mm.2647	NM_011072	ENSMUSG00000018293	Pfn1	Pfn	profilin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-110545617-4	chr13	110545523	110545723	+	988.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	150579.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111375686-3	chr12	111375542	111375742	+	804.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183016, intron 1 of 36)	intron (NM_183016, intron 1 of 36)	2076.0	NM_183016	217866.0	Mm.27397	NM_183016	ENSMUSG00000021279	Cdc42bpb	MRCKb	CDC42 binding protein kinase beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-40880454-4	chr17	40880343	40880543	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027834, exon 1 of 2)	exon (NM_027834, exon 1 of 2)	115.0	NM_027834	71583.0	Mm.158733	NM_027834	ENSMUSG00000054951	9130008F23Rik	-	RIKEN cDNA 9130008F23 gene	protein-coding	5.02271879451559	4.92555743562389	4.8176940981805	5.07956955004219	4.62360313226331	3.20161646109869	5.14422272442567	3.97134846846449	-0.664070533433608	0.116739283273227	0.535139297266498
Merged-chr11-60222969-4	chr11	60222868	60223068	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358315)	promoter-TSS (NM_001358315)	-387.0	NM_001358315	20787.0	Mm.278701	NM_011480	ENSMUSG00000020538	Srebf1	ADD1|SREBP1|bHLHd1	sterol regulatory element binding transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-98813790-2	chr13	98813699	98813899	+	556.5	f0_balb.idr|f0_c57.idr	intron (NM_172591, intron 1 of 25)	L1MB7|LINE|L1	1650.0	NM_172591	218503.0	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-96623838-1	chr10	96623738	96623938	+	800.0	f0_balb.idr	Intergenic	Intergenic	6837.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-64886673-4	chr18	64886579	64886779	+	962.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1077.0	NM_001114386	83814.0	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150272888-2	chr4	150272780	150272980	+	860.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	AmnSINE1|SINE|Deu	-9036.0	NM_001085492	68703.0	Mm.291274	NM_001085492	ENSMUSG00000039852	Rere	1110033A15Rik|AI414665|ARG|ARP|ATN1L|AW742570|Atr2|DNB1|eye<m03Jus>|eyes3|mKIAA0458	arginine glutamic acid dipeptide (RE) repeats	protein-coding	1.76840972520228	0.916235096708957	1.61110571868941	2.18982927115935	1.7851838776947	0.920322765887784	0.901905111313897	1.28341946572167	-1.35273054712058	0.309455398991032	0.810196607690797
Merged-chr9-46099331-4	chr9	46099237	46099437	+	995.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027498, intron 1 of 24)	intron (NM_027498, intron 1 of 24)	86517.0	NM_027498	70661.0	Mm.219459	NM_027498	ENSMUSG00000034135	Sik3	5730525O22Rik|9030204A07Rik|AI447252|AI846254|AI849445|Qsk|SIK-3|mKIAA0999	SIK family kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-146494179-2	chr4	146494114	146494314	+	567.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7786.0	NM_001243138	100041433.0	Mm.441741	NM_001243138	ENSMUSG00000056300	Zfp981	Gm13247	zinc finger protein 981	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-58225423-2	chr10	58225323	58225523	+	843.599976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7252.0	NM_001081954	664783.0	Mm.482575	NM_001081954		Dux	AW822073|Dux4|Duxbl|EG664783	double homeobox	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152536679-4	chr1	152536557	152536757	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 11 of 17)	intron (NM_016846, intron 11 of 17)	88560.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123610083-2	chr5	123609983	123610183	+	806.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359224, intron 15 of 18)	intron (NM_001359224, intron 15 of 18)	-37068.0	NM_029929	77573.0	Mm.41372	NM_029929	ENSMUSG00000029434	Vps33a	3830421M04Rik|AI503300|AW048546|AW554476|bf	VPS33A CORVET/HOPS core subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-82773526-4	chr6	82773440	82773640	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013820, intron 1 of 17)	CpG	914.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-70318809-2	chr10	70318709	70318909	+	776.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	73533.0	NM_025807	66859.0	Mm.19325	NM_025807	ENSMUSG00000037762	Slc16a9	1200003C15Rik|4930425B13Rik|AI552636	solute carrier family 16 (monocarboxylic acid transporters), member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-84110734-3	chr10	84110618	84110818	+	815.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10021.0	NR_152790	102637349.0	Mm.402869	NR_152790	ENSMUSG00000111049	Gm34184	-	predicted gene, 34184	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-88832112-4	chr6	88832008	88832208	+	932.0166630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9827.0	NM_001362152	80283.0	Mm.166858	NM_030251	ENSMUSG00000030083	Abtb1	AI847549|BC003234|BPOZ|EF1ABP	ankyrin repeat and BTB (POZ) domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-8929458-2	chr12	8929358	8929558	+	613.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008640, intron 1 of 6)	L1MA6|LINE|L1	8151.0	NM_008640	17775.0	Mm.30071	NM_008640	ENSMUSG00000020585	Laptm4a	AA286466|LAPTM4|MTP|Mtrp|mKIAA0108	lysosomal-associated protein transmembrane 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-52197213-2	chr3	52197113	52197313	+	667.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-71124.0	NM_019739	56458.0	Mm.29891	NM_019739	ENSMUSG00000044167	Foxo1	AI876417|Afxh|FKHR|Fkhr1|Foxo1a	forkhead box O1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-51783823-3	chr17	51783730	51783930	+	627.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357637, intron 6 of 10)	intron (NM_001357637, intron 6 of 10)	28224.0	NM_001163630	20230.0	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-75838932-1	chr13	75838832	75839032	+	556.0	f1_balb.idr	promoter-TSS (NM_001360151)	promoter-TSS (NM_001360151)	-953.0	NM_001360151	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	1.17182099566056	1.74656119940598	2.01189451856711	2.55666258720726	2.19412673962484	1.9420027201087	1.70286063293973	2.78006983177707	0.599399176087479	0.553235368152967	0.959658647102134
Merged-chr5-101951255-2	chr5	101951155	101951355	+	576.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_172882, exon 9 of 67)	exon (NM_172882, exon 9 of 67)	118666.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65550387-3	chr9	65550291	65550491	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29696.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-73449229-2	chr14	73449129	73449329	+	799.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60820.0	NM_026119	67381.0	Mm.282888	NM_026119	ENSMUSG00000022109	Med4	2410046H15Rik|DRIP36|HSPC126|TRAP36|Vdirp|Vdrip	mediator complex subunit 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-165855272-2	chr1	165855172	165855372	+	928.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113391, intron 2 of 7)	intron (NM_001113391, intron 2 of 7)	66591.0	NM_001113392	12503.0	Mm.217308	NM_031162	ENSMUSG00000005763	Cd247	4930549J05Rik|A430104F18Rik|AW552088|Cd3|Cd3-eta|Cd3-zeta|Cd3h|Cd3z|Cd3zeta|T3z|Tcrk|Tcrz	CD247 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-139279353-2	chr4	139279253	139279453	+	688.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037761, intron 4 of 9)	intron (NM_001037761, intron 4 of 9)	31355.0	NR_151463	212555.0	Mm.45131	NM_145384	ENSMUSG00000028744	Pqlc2	BC019216	PQ loop repeat containing 2	protein-coding	1.42894635392032	1.29075479909205	1.36575265681058	0.723042285104617	0.709565987755187	1.30174062121999	0.735117529826117	1.43538788319373	-0.573429615321543	0.700989757355197	0.998431161219273
Merged-chr13-12680789-4	chr13	12680703	12680903	+	803.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30408.0	NR_003568	664862.0	Mm.415635	NR_003568		Gpr137b-ps	2310041G17Rik	G protein-coupled receptor 137B, pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36708978-4	chr18	36708871	36709071	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER4B-int|LTR|ERV1	-13046.0	NM_172831	240216.0	Mm.252323	NM_172831	ENSMUSG00000044719	E230025N22Rik	EG240216	Riken cDNA E230025N22 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-38936063-2	chr6	38935963	38936163	+	627.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 1 of 12)	intron (NM_011539, intron 1 of 12)	17077.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-113999594-4	chr5	113999502	113999702	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-4133.0	NM_010018	13142.0	Mm.20115	NM_010018	ENSMUSG00000042096	Dao	AI987963|DAAO|DAMOX|Dao-1|Dao1	D-amino acid oxidase	protein-coding	5.13956058263674	5.78314398062898	4.92150836011502	5.70327728910869	5.74076216326047	5.79187730994723	5.82894067531742	5.83381060138959	0.417984734609155	0.130774081696392	0.566336454410263
Merged-chr16-4077808-4	chr16	4077716	4077916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026508)	promoter-TSS (NM_026508)	-6.0	NM_026508	68015.0	Mm.123366	NM_026508	ENSMUSG00000005981	Trap1	2410002K23Rik|HSP75	TNF receptor-associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-49766520-4	chr16	49766423	49766623	+	732.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC4|LINE|L1	67229.0	NM_028680	73916.0	Mm.241276	NM_028680	ENSMUSG00000032965	Ift57	4833420A15Rik|Esrrbl1|Hippi|MHS4R2	intraflagellar transport 57	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-56675608-3	chr18	56675488	56675688	+	793.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32225.0	NM_010721	16906.0	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-25447366-4	chr10	25447266	25447466	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358754, intron 3 of 16)	intron (NM_001358754, intron 3 of 16)	38998.0	NM_013511	13822.0	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-19657681-4	chr2	19657587	19657787	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027715)	promoter-TSS (NM_027715)	210.0	NR_033642	100041244.0	Mm.407223	NR_033642		Gm3230	-	predicted gene 3230	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-184025375-3	chr1	184025265	184025465	+	763.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8633.0	NM_028516	73363.0	Mm.50115	NM_028516	ENSMUSG00000044854	1700056E22Rik	-	RIKEN cDNA 1700056E22 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-45489849-4	chr4	45489747	45489947	+	965.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033306, intron 1 of 5)	intron (NM_001033306, intron 1 of 5)	40981.0	NM_001033306	230126.0	Mm.251716	NM_001033306	ENSMUSG00000044813	Shb	BC028832	src homology 2 domain-containing transforming protein B	protein-coding	2.42014340868039	2.69981746641615	2.81743331351159	2.5427352610013	2.43889582065181	2.71885382464137	2.83824045937933	2.55517681366772	0.0378950732909613	0.957878447003178	0.998431161219273
Merged-chr7-81344405-3	chr7	81344321	81344521	+	774.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009092, intron 2 of 4)	intron (NM_009092, intron 2 of 4)	813.0	NM_009092	20068.0	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27742921-2	chr2	27742821	27743021	+	678.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290481, intron 4 of 9)	intron (NM_001290481, intron 4 of 9)	32338.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-51163580-4	chr14	51163479	51163679	+	996.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_019398)	TTS (NM_019398)	1319.0	NM_019398	54159.0	Mm.377125	NM_019398	ENSMUSG00000059606	Rnase2b	Ear5|Raf4|mR5	ribonuclease, RNase A family, 2B (liver, eosinophil-derived neurotoxin)	protein-coding	3.16813439525572	3.46475080684779	3.00291069885186	2.27246686671445	3.63887308403824	2.89881309854058	2.91931846669479	2.58751846692557	0.0669911390555102	0.920950701068706	0.998431161219273
Merged-chr11-103177815-2	chr11	103177715	103177915	+	960.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019679, intron 1 of 26)	intron (NM_019679, intron 1 of 26)	6677.0	NM_019679	57778.0	Mm.138913	NM_019679	ENSMUSG00000055805	Fmnl1	8030453N10Rik|AI553564|Fmnl|Fnrl|Frls	formin-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-68183975-4	chr8	68183873	68184073	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-92555.0	NM_028182	72281.0	Mm.40974	NM_028182	ENSMUSG00000053886	Sh2d4a	2210402M20Rik|SH2A	SH2 domain containing 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55791004-3	chr19	55790895	55791095	+	787.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001331146, intron 4 of 14)	intron (NM_001331146, intron 4 of 14)	49185.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	1.5683601500634	1.01447617215537	1.94003924497783	0.978959186723651	2.18016582882737	1.64013513582993	1.95679994042252	1.19961759148752	1.0808785789629	0.37597038017626	0.869176081465326
Merged-chr19-4147953-2	chr19	4147853	4148053	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011778)	promoter-TSS (NM_011778)	-710.0	NM_011778	23789.0	Mm.276859	NM_011778	ENSMUSG00000024835	Coro1b	-	coronin, actin binding protein 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52892201-2	chr13	52892101	52892301	+	740.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_016709, intron 4 of 9)	intron (NM_016709, intron 4 of 9)	37476.0	NM_016709	11992.0	Mm.252034	NM_016709	ENSMUSG00000021460	Auh	C77140|W91705	AU RNA binding protein/enoyl-coenzyme A hydratase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-103358411-2	chr11	103358298	103358498	+	709.75	f1_balb.idr|f1_c57bl6.idr	TTS (NM_183288)	TTS (NM_183288)	5294.0	NM_183288	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	-0.0166813787976088	0.328026303747536	-0.00732442065198194	0.271728918218653	0.33995780552539	-0.00169165102010829	-0.00631313945308548	0.493088671891046	0.604973024918734	0.777559327702738	1
Merged-chr11-86756292-3	chr11	86756193	86756393	+	858.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003908, intron 1 of 31)	intron (NM_001003908, intron 1 of 31)	1274.0	NM_001003908	67300.0	Mm.254588	NM_001003908	ENSMUSG00000047126	Cltc	3110065L21Rik|CHC|R74732	clathrin, heavy polypeptide (Hc)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-56741247-2	chr19	56741147	56741347	+	553.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER110|LTR|ERV1	18875.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-65319810-4	chr3	65319723	65319923	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357358, intron 8 of 13)	intron (NM_001357358, intron 8 of 13)	-17138.0	NR_126080	102637797.0	Mm.446731	NR_126080	ENSMUSG00000104093	A330015K06Rik	-	RIKEN cDNA A330015K06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-78924448-3	chr7	78924387	78924587	+	665.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10252.0	NM_001113527	57444.0	Mm.322843	NM_020583	ENSMUSG00000039236	Isg20	1600023I01Rik|2010107M23Rik|20kDa|DnaQL|HEM45	interferon-stimulated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95229493-2	chr3	95229393	95229593	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019914)	promoter-TSS (NM_019914)	550.0	NM_001038708	57912.0	Mm.28189	NM_172395	ENSMUSG00000046722	Cdc42se1	1300002M12Rik|AW558204|Cdcse1|SCIP1|Spec1	CDC42 small effector 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75550961-2	chr11	75550861	75551061	+	815.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_039553)	promoter-TSS (NR_039553)	-468.0	NR_039553	100628624.0		NR_039553	ENSMUSG00000093100	Mir3971	mmu-mir-3971|mu-mir-3971	microRNA 3971	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24209104-5	chr17	24208984	24209184	+	865.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010947, exon 1 of 6)	5' UTR (NM_010947, exon 1 of 6)	303.0	NM_010947	18209.0	Mm.259542	NM_010947	ENSMUSG00000036473	Ntn3	Ntn2l	netrin 3	protein-coding	2.13761108910895	2.42202880959315	3.59000188528886	3.55504416273367	2.31606146402862	3.51781604249075	3.40346320016412	3.30041404430477	0.193348771834915	0.784234385863159	0.998431161219273
Merged-chr2-144258071-1	chr2	144257971	144258171	+	802.666687	f0_balb.idr	intron (NM_024225, intron 4 of 12)	intron (NM_024225, intron 4 of 12)	8131.0	NR_030762	100313519.0	Mm.453538	NR_030762	ENSMUSG00000077714	Snord17	MBI-43	small nucleolar RNA, C/D box 17	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-79972963-2	chr10	79972863	79973063	+	649.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_130455, exon 2 of 9)	exon (NM_130455, exon 2 of 9)	2239.0	NM_130455	170483.0	Mm.391566	NM_130455	ENSMUSG00000035745	Grin3b	GluN3B|NR3B	glutamate receptor, ionotropic, NMDA3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-120167940-4	chr5	120167812	120168012	+	904.3250119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028762, intron 21 of 23)	intron (NM_028762, intron 21 of 23)	-28649.0	NR_045793	100503427.0	Mm.446834	NR_045793	ENSMUSG00000097368	Gm10390	-	predicted gene 10390	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167421541-4	chr2	167421441	167421641	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_148929)	promoter-TSS (NM_148929)	-169.0	NM_148929	77031.0	Mm.278924	NM_148929	ENSMUSG00000039463	Slc9a8	1200006P13Rik|6430709P13Rik|AI182282|NHE-8|NHE8	solute carrier family 9 (sodium/hydrogen exchanger), member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-82685607-2	chr18	82685507	82685707	+	650.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_177832, intron 1 of 29)	intron (NM_177832, intron 1 of 29)	7127.0	NM_177832	329002.0	Mm.34438	NM_177832	ENSMUSG00000041258	Zfp236	AI447957|Gm335	zinc finger protein 236	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-8319679-2	chr12	8319579	8319779	+	569.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_021429, intron 2 of 6)	(CA)n|Simple_repeat|Simple_repeat	6246.0	NM_021429	58240.0	Mm.309954	NM_021429	ENSMUSG00000020605	Hs1bp3	-	HCLS1 binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-63916550-4	chr7	63916458	63916658	+	966.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001256311)	promoter-TSS (NM_001256311)	-299.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	1.21648186457501	2.44120530846572	2.52706839812463	1.02619322355373	1.42143757875501	2.6450615626613	2.03382462250672	1.03055566864106	-0.117120749072438	0.92068770529581	0.998431161219273
Merged-chr16-23108132-7	chr16	23108042	23108242	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_030705)	promoter-TSS (NR_030705)	674.0	NM_001347179	13682.0	Mm.260084	NM_013506	ENSMUSG00000022884	Eif4a2	4833432N07Rik|BM-010|Ddx2b|Eif4|eIF-4A-II|eIF4A-II	eukaryotic translation initiation factor 4A2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-70992940-4	chr2	70992839	70993039	+	997.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145524, intron 3 of 9)	B4A|SINE|B4	25435.0	NM_001110512	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30594279-3	chr7	30594165	30594365	+	848.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153655, intron 1 of 3)	intron (NR_153655, intron 1 of 3)	-1323.0	NM_021397	58206.0	Mm.116789	NM_021397	ENSMUSG00000006310	Zbtb32	4930524C15Rik|FAXF|FAZF|PLZP|Rog|Tzfp	zinc finger and BTB domain containing 32	protein-coding	1.3511473047581	0.8234701274454	0.560054576655739	0.945220741138393	0.893546775235466	0.578011726527294	0.563328614638149	2.05715514178055	0.935969971245709	0.542201135260701	0.954935047166076
Merged-chr2-59889905-4	chr2	59889815	59890015	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR9A3|LTR|ERVK	-7309.0	NM_028118	72137.0	Mm.288734	NM_028118	ENSMUSG00000026988	Wdsub1	1700048E19Rik|2610014F08Rik	WD repeat, SAM and U-box domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-40239823-4	chr4	40239735	40239935	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172689)	promoter-TSS (NM_172689)	-10.0	NM_172689	230073.0	Mm.86382	NM_172689	ENSMUSG00000040296	Ddx58	6430573D20Rik|C330021E21|RIG-I|RLR-1	DEAD (Asp-Glu-Ala-Asp) box polypeptide 58	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150624084-2	chr4	150623875	150624075	+	971.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28199.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80943103-4	chr10	80942988	80943188	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12997.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135964527-2	chr4	135964427	135964627	+	752.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356493, intron 1 of 10)	intron (NM_001356493, intron 1 of 10)	802.0	NM_001356493	74246.0	Mm.247946	NM_178389	ENSMUSG00000028671	Gale	2310002A12Rik|AI323962	galactose-4-epimerase, UDP	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-7766264-2	chr3	7766164	7766364	+	693.625	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-152504.0	NM_001313888	16196.0	Mm.3825	NM_008371	ENSMUSG00000040329	Il7	A630026I06Rik|Il-7|hlb368	interleukin 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129515182-2	chr4	129515114	129515314	+	932.166626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_008228)	TTS (NM_008228)	1633.0	NM_010807	17357.0	Mm.424974	NM_010807	ENSMUSG00000047945	Marcksl1	AL022768|AW215397|AW536807|D4Bc1|F52|MacMARCKS|Macs2|Macs3|Mlp|Mrp	MARCKS-like 1	protein-coding	0.831032174397766	0.698311277612837	1.06482753840175	1.745630526461	0.836938540981367	1.53023267363929	0.89965854837474	1.0379702758532	-0.239881183606536	0.862785201111046	0.998431161219273
Merged-chr10-79681920-4	chr10	79681829	79682029	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177613)	promoter-TSS (NM_177613)	-266.0	NM_001359818	216150.0	Mm.21981	NM_177613	ENSMUSG00000020307	Cdc34	AI327276|E2-CDC34|UBE2R1	cell division cycle 34	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-48853896-4	chr16	48853786	48853986	+	947.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	11334.0	NM_020509	57262.0	Mm.441868	NM_020509	ENSMUSG00000061100	Retnla	1810019L16Rik|Fizz-1|Fizz1|HIMF|RELM-alpha|RELMa|RELMalpha|Xcp2	resistin like alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-68732094-2	chr3	68732033	68732233	+	677.75	f0_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29362.0	NR_153374	102639225.0	Mm.109095	NR_153374	ENSMUSG00000102936	Gm35584	-	predicted gene, 35584	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-40857680-4	chr11	40857554	40857754	+	703.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-102368.0	NM_009831	12450.0	Mm.2103	NM_009831	ENSMUSG00000020326	Ccng1	AI314029	cyclin G1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-14869448-3	chr14	14869340	14869540	+	985.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195229, intron 21 of 34)	HAL1|LINE|L1	48625.0	NM_001195229	674895.0	Mm.317563	NM_001034865	ENSMUSG00000042567	Nek10	Gm282	NIMA (never in mitosis gene a)- related kinase 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-131089832-4	chr2	131089731	131089931	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3066.0	NM_011426	20612.0	Mm.1374	NM_011426	ENSMUSG00000027322	Siglec1	Cd169|Siglec-1|Sn	sialic acid binding Ig-like lectin 1, sialoadhesin	protein-coding	4.7392922262189	4.18260868713257	5.19155945349696	5.1874109880629	4.66792742531871	4.4917918176116	5.3491196111304	5.02241605340138	0.0428741583432882	0.907032684247899	0.998431161219273
Merged-chr16-14477798-4	chr16	14477793	14477993	+	764.224976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-84424.0	NR_033556	545280.0	Mm.123679	NR_033556		A630010A05Rik	-	RIKEN cDNA A630010A05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-6760969-3	chr18	6760858	6761058	+	827.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4209.0	NM_181070	19330.0	Mm.132802	NM_181070	ENSMUSG00000073639	Rab18	AA959686	RAB18, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-105515903-1	chr5	105515803	105516003	+	562.0	f1_balb.idr	Intergenic	Intergenic	-3568.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	1.60983525737382	2.45131379057731	1.33337619492049	1.00180739511501	1.44140487884035	1.4002324339141	3.60297485523907	2.39928372775126	1.7552754499711	0.101566696055184	0.495499004853658
Merged-chr15-57993353-2	chr15	57993253	57993453	+	603.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173862, intron 2 of 3)	intron (NM_173862, intron 2 of 3)	7450.0	NM_173862	239463.0	Mm.221241	NM_173862	ENSMUSG00000051225	Fam83a	-	family with sequence similarity 83, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-52242675-4	chr3	52242573	52242773	+	783.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MMERGLN-int|LTR|ERV1	-25664.0	NM_019739	56458.0	Mm.29891	NM_019739	ENSMUSG00000044167	Foxo1	AI876417|Afxh|FKHR|Fkhr1|Foxo1a	forkhead box O1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-12784607-2	chr8	12784507	12784707	+	585.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_015804, intron 1 of 28)	intron (NM_015804, intron 1 of 28)	27591.0	NM_001293667	50770.0	Mm.257837	NM_015804	ENSMUSG00000031441	Atp11a	4930558F19Rik|AU040868|Atpc1h|Ih	ATPase, class VI, type 11A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-41284619-4	chr8	41284574	41284774	+	995.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023662, intron 16 of 37)	RCHARR1|DNA|hAT-Charlie	44915.0	NM_023662	18536.0	Mm.117896	NM_023662	ENSMUSG00000031592	Pcm1	2600002H09Rik|9430077F19Rik|C030044G17Rik	pericentriolar material 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-21780177-1	chr19	21780077	21780277	+	575.0	f1_c57bl6.idr	5' UTR (NM_031997, exon 2 of 25)	5' UTR (NM_031997, exon 2 of 25)	1837.0	NM_031997	83921.0	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-27212161-2	chr7	27212061	27212261	+	772.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_181593, intron 6 of 6)	intron (NM_181593, intron 6 of 6)	6625.0	NR_035422	100316839.0		NR_035422	ENSMUSG00000080533	Mir1191	Mirn1191|mmu-mir-1191|mmu-mir-1191a	microRNA 1191	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89322642-2	chr3	89322542	89322742	+	839.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010108, intron 1 of 4)	intron (NM_010108, intron 1 of 4)	237.0	NM_010108	13638.0	Mm.331159	NM_010108	ENSMUSG00000028039	Efna3	AW494418|EFL-2|Ehk1-L|Epl3|LERK-3	ephrin A3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-91195267-4	chr10	91195159	91195359	+	977.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13B|LTR|ERVK	-23640.0	NM_001080130	21917.0	Mm.159684	NM_011605	ENSMUSG00000019961	Tmpo	5630400D24Rik|AI195756|AI606875|AW214352|AW547477|LAP2|TP	thymopoietin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84903217-4	chr8	84903123	84903323	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010635, exon 2 of 3)	exon (NM_010635, exon 2 of 3)	1295.0	NM_010635	16596.0	Mm.4847	NM_010635	ENSMUSG00000054191	Klf1	Eklf|Nan	Kruppel-like factor 1 (erythroid)	protein-coding	3.61472735999349	1.89746122948956	2.0627480060747	3.41860213019129	2.08704958205176	3.17632780383945	3.54139726816275	3.06336654424774	0.133322805385061	0.864413442387475	0.998431161219273
Merged-chr11-105599600-2	chr11	105599500	105599700	+	733.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_181071, intron 1 of 25)	intron (NM_181071, intron 1 of 25)	9614.0	NM_181071	77097.0	Mm.22501	NM_175492	ENSMUSG00000053580	Tanc2	3526402J09Rik|5730590C14Rik	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30680911-2	chr2	30680811	30681011	+	622.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-2900.0	NR_136917	665635.0	Mm.450149	NR_136917		Gm14486	-	predicted gene 14486	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-126552342-2	chr2	126552242	126552442	+	768.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011978)	promoter-TSS (NM_011978)	-682.0	NM_011978	26458.0	Mm.290044	NM_011978	ENSMUSG00000027359	Slc27a2	ACSVL1|FATP2|VLCS|Vlac|Vlacs	solute carrier family 27 (fatty acid transporter), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-153500656-1	chr1	153500556	153500756	+	835.0	f0_balb.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-12996.0	NM_007842	13211.0	Mm.20000	NM_007842	ENSMUSG00000042699	Dhx9	AI326842|Ddx9|HEL-5|NDHII|RHA|mHEL-5	DEAH (Asp-Glu-Ala-His) box polypeptide 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-70832355-4	chr9	70832230	70832430	+	874.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001324473, intron 1 of 8)	intron (NM_001324473, intron 1 of 8)	102478.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-16168611-4	chr4	16168497	16168697	+	974.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045765, intron 1 of 6)	intron (NR_045765, intron 1 of 6)	4487.0	NR_045765	100415915.0	Mm.387180	NR_045765	ENSMUSG00000085112	A530072M11Rik	-	RIKEN cDNA gene A530072M11	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-121706171-2	chr11	121706071	121706271	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144797, intron 1 of 3)	intron (NM_144797, intron 1 of 3)	3744.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71290596-2	chr8	71290496	71290696	+	770.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001142323, exon 2 of 39)	exon (NM_001142323, exon 2 of 39)	17882.0	NM_001142323	17925.0	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-60367466-2	chr2	60367366	60367566	+	757.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013825, intron 3 of 34)	MTC|LTR|ERVL-MaLR	15765.0	NM_013825	17076.0	Mm.2074	NM_013825	ENSMUSG00000026980	Ly75	CD205|DEC-205|DEC205	lymphocyte antigen 75	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75047951-4	chr11	75047836	75048036	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001002764, intron 12 of 18)	intron (NM_001002764, intron 12 of 18)	18055.0	NR_030454	735274.0		NR_030454	ENSMUSG00000106252	Mir684-1	Mirn684-1	microRNA 684-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-148734027-1	chr6	148733927	148734127	+	542.0	f1_c57bl6.idr	Intergenic	MTC-int|LTR|ERVL-MaLR	-56027.0	NR_131024	75831.0	Mm.159595	NR_131024	ENSMUSG00000084909	4930528G23Rik	-	RIKEN cDNA 4930528G23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-59293777-3	chr9	59293641	59293841	+	633.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359282, intron 1 of 6)	intron (NM_001359282, intron 1 of 6)	2169.0	NM_028121	72141.0	Mm.22456	NM_028121	ENSMUSG00000025236	Adpgk	2610017G09Rik|Adp-gk|C77577	ADP-dependent glucokinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-83271830-3	chr4	83271696	83271896	+	714.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027238, intron 2 of 19)	B1F2|SINE|Alu	52393.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	1.16816337730645	0.808431723999753	0.612383717842102	0.415099344144715	1.25538099109149	0.43236622614684	0.617938583211698	0.416273487563502	-0.214799675607146	0.900674511526899	1
Merged-chr2-37765194-1	chr2	37765094	37765294	+	549.0	f1_balb.idr	Intergenic	Intergenic	-11055.0	NM_001163566	241324.0	Mm.392369	NM_001163566	ENSMUSG00000035403	Crb2	5930402A21|BC043114	crumbs family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-28304032-1	chr10	28303932	28304132	+	549.0	f0_balb.idr	intron (NM_001359356, intron 3 of 30)	intron (NM_001359356, intron 3 of 30)	229212.0	NM_001359356	19272.0	Mm.332303	NM_008983	ENSMUSG00000019889	Ptprk	AI853699|PTPk|RPTPkappa	protein tyrosine phosphatase, receptor type, K	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-90234410-2	chr9	90234310	90234510	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 3 of 12)	intron (NM_194334, intron 3 of 12)	36359.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-23538420-4	chr13	23538309	23538509	+	907.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	2991.0	NM_145073	97908.0	Mm.261657	NM_145073	ENSMUSG00000099517	Hist1h3g	H3.1-221|M32460	histone cluster 1, H3g	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-12814025-1	chr19	12813925	12814125	+	710.0	f0_balb.idr	intron (NM_134152, intron 3 of 8)	intron (NM_134152, intron 3 of 8)	15446.0	NM_134152	107321.0	Mm.313136	NM_134152	ENSMUSG00000024696	Lpxn	4933402K05Rik|A530083L21Rik|AV278559|LDPL	leupaxin	protein-coding	0.193380097261949	0.218401962382276	0.21029013244401	1.15888673384926	0.829445932338013	0.771830821331313	0.212086120785504	0.205082637507833	0.0214749360687815	0.991627768982986	1
Merged-chr9-14885299-3	chr9	14885188	14885388	+	730.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_176807)	TTS (NM_176807)	18663.0	NM_176807	64931.0	Mm.86738	NM_022888	ENSMUSG00000031933	Izumo1r	0910001L11Rik|C86255|Folbp3|Folr4|Juno	IZUMO1 receptor, JUNO	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-25298397-4	chr10	25298297	25298497	+	896.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018747, intron 1 of 7)	Lx5c|LINE|L1	766.0	NM_018747	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	-1.15949077117289	-0.792680036568823	-1.14662411067543	-1.15563698880387	-1.15901935799022	-1.13327420936681	-0.817339165853625	-1.15402368792805	0.00195645353592696	0.999529498811667	1
Merged-chr10-100030915-3	chr10	100030812	100031012	+	587.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347156, intron 1 of 8)	intron (NM_001347156, intron 1 of 8)	15091.0	NM_013598	17311.0	Mm.45124	NM_013598	ENSMUSG00000019966	Kitl	Clo|Con|Gb|Kitlg|Mgf|SCF|SF|SLF|Sl|blz|contrasted	kit ligand	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-24679707-1	chr1	24679607	24679807	+	888.0	f0_balb.idr	intron (NM_001310483, intron 1 of 15)	intron (NM_001310483, intron 1 of 15)	789.0	NM_001310483	68421.0	Mm.336563	NM_026719	ENSMUSG00000073725	Lmbrd1	0910001K20Rik|AV347960	LMBR1 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-67526178-4	chr13	67526072	67526272	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133228)	promoter-TSS (NM_133228)	59.0	NM_133228	170763.0	Mm.491205	NM_133228	ENSMUSG00000097333	Zfp87	2210039O17Rik|4631412O18Rik|KRAB4|Mzf22|Zfp72	zinc finger protein 87	protein-coding	5.75858323781181	4.73008508156071	4.77498740832941	4.69364933957012	5.47966364589601	5.25267315445782	4.55813626877134	5.65977655159378	0.254453917738951	0.487286456549765	0.932875548244773
Merged-chr7-127113194-2	chr7	127113094	127113294	+	671.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133686, intron 1 of 3)	intron (NM_133686, intron 1 of 3)	8835.0	NM_133686	67375.0	Mm.26928	NM_133686	ENSMUSG00000030674	Qprt	2410027J01Rik|AI647766|QPRTase	quinolinate phosphoribosyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-36630401-2	chr16	36630301	36630501	+	792.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019388, intron 1 of 7)	intron (NM_019388, intron 1 of 7)	35676.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-103683082-4	chr2	103682989	103683189	+	971.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178890, intron 2 of 16)	intron (NM_178890, intron 2 of 16)	78181.0	NM_153126	98956.0	Mm.288005	NM_153126	ENSMUSG00000027185	Nat10	AI429152	N-acetyltransferase 10	protein-coding	2.98879373861655	3.46523092749992	2.24579039142814	3.49668682214458	3.66212390029277	4.3878678520655	3.17428188043347	3.58653787287704	0.980079019016593	0.102162043265822	0.497056040187887
Merged-chr11-86602347-4	chr11	86602227	86602427	+	946.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356531, intron 9 of 11)	intron (NM_001356531, intron 9 of 11)	-18169.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-75147907-4	chr14	75147813	75148013	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008879, intron 1 of 16)	L1_Mus3|LINE|L1	11488.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-67134443-2	chr17	67134343	67134543	+	664.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 2 of 32)	intron (NM_001357625, intron 2 of 32)	-108208.0	NR_049205	100885844.0		NR_049205	ENSMUSG00000093508	Mir5709	Gm22041|mir-5709|mmu-mir-5709	microRNA 5709	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-79197222-4	chr3	79197109	79197309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15710.0	NR_045502	70924.0	Mm.444622	NR_045502	ENSMUSG00000104585	4921511C10Rik	-	RIKEN cDNA 4921511C10 gene	ncRNA	7.38965501688575	7.21891443825453	7.42149116677142	7.21987117462957	7.17368532065837	7.33897030714519	7.53969395551907	7.00817525115286	-0.0436996277863087	0.789724250083071	0.998431161219273
Merged-chr7-19024261-4	chr7	19024166	19024366	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026605)	promoter-TSS (NM_026605)	-111.0	NM_001360713	68188.0	Mm.130902	NM_026605	ENSMUSG00000023118	Sympk	1500016F02Rik|4632415H16Rik|AA125406|AI449890|SPK|SYM	symplekin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-6136099-4	chr18	6135996	6136196	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029277)	promoter-TSS (NM_029277)	2.0	NM_029277	75415.0	Mm.239675	NM_029277	ENSMUSG00000041225	Arhgap12	2810011M08Rik	Rho GTPase activating protein 12	protein-coding	6.9296968520129	6.67181622130625	6.31900854636842	7.34844860577122	7.35897259575346	6.94939283748706	7.18048530615999	7.15348975693807	0.315176944245885	0.131536788352816	0.567281950631593
Merged-chr6-88197323-2	chr6	88197223	88197423	+	578.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355253, intron 1 of 5)	CpG	-1341.0	NM_008090	14461.0	Mm.491156	NM_008090	ENSMUSG00000015053	Gata2	Gata-2	GATA binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-152913240-5	chr3	152913106	152913306	+	933.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012028, intron 2 of 4)	intron (NM_012028, intron 2 of 4)	69001.0	NM_012028	26938.0	Mm.40915	NM_012028	ENSMUSG00000039037	St6galnac5	AI851940|Siat7e	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-34810407-2	chr4	34810307	34810507	+	632.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_013889, exon 8 of 8)	exon (NM_013889, exon 8 of 8)	-32041.0	NM_025471	66291.0	Mm.28071	NM_025471	ENSMUSG00000028295	Smim8	1810030N24Rik|2810406B13Rik	small integral membrane protein 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-36643593-2	chr16	36643493	36643693	+	757.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019388, intron 1 of 7)	intron (NM_019388, intron 1 of 7)	22484.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81175666-2	chr10	81175566	81175766	+	740.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007907)	promoter-TSS (NM_007907)	-965.0	NM_007907	13629.0	Mm.2903	NM_007907	ENSMUSG00000034994	Eef2	Ef-2	eukaryotic translation elongation factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-45876471-4	chr5	45876371	45876571	+	908.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-18931.0	NM_001359873	209707.0	Mm.71498	NM_172153	ENSMUSG00000015882	Lcorl	Mlr1	ligand dependent nuclear receptor corepressor-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-3668114-2	chr11	3668014	3668214	+	695.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198162, intron 3 of 25)	intron (NM_198162, intron 3 of 25)	9414.0	NM_198162	74522.0	Mm.139127	NM_198162	ENSMUSG00000034543	Morc2a	8430403M08Rik|Zcwcc1	microrchidia 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-20946612-2	chr5	20946512	20946712	+	674.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080977, intron 1 of 7)	(A)n|Simple_repeat|Simple_repeat	-4377.0	NR_030699	320770.0	Mm.491217	NR_030699	ENSMUSG00000101013	A630072M18Rik	Aptr	RIKEN cDNA A630072M18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166732396-4	chr2	166732303	166732503	+	844.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18571.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71513212-2	chr8	71513112	71513312	+	829.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1443.0	NM_032398	84094.0	Mm.260768	NM_032398	ENSMUSG00000034845	Plvap	MECA32|Pv1	plasmalemma vesicle associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-30547000-1	chr14	30546900	30547100	+	1000.0	f1_balb.idr	Intergenic	Intergenic	-2131.0	NM_009388	21881.0	Mm.290692	NM_009388	ENSMUSG00000021957	Tkt	p68	transketolase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-51709379-4	chr3	51709301	51709501	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 2 of 4)	RMER15|LTR|ERVL	48222.0	NM_001310482	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-98738349-2	chr12	98738249	98738449	+	693.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146199)	promoter-TSS (NM_001146199)	-944.0	NM_001146199	24000.0	Mm.4420	NM_011877	ENSMUSG00000021009	Ptpn21	PTPD1|PTPRL10	protein tyrosine phosphatase, non-receptor type 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35189379-4	chr17	35189310	35189510	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010734)	promoter-TSS (NM_010734)	-970.0	NM_010734	16988.0	Mm.19379	NM_010734	ENSMUSG00000073412	Lst1	B144	leukocyte specific transcript 1	protein-coding	2.70418794342652	2.5288087165316	3.41394222698166	3.02977148828213	2.90083680943564	1.950089003384	3.22193322956837	2.95816488968413	-0.221757296730995	0.755277943108943	0.998431161219273
Merged-chr14-117779214-4	chr14	117779122	117779322	+	706.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011821, intron 4 of 8)	intron (NM_011821, intron 4 of 8)	174625.0	NR_105747	102465148.0		NR_105747	ENSMUSG00000098648	Mir6239	Gm28025|mmu-mir-6239	microRNA 6239	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-66845503-4	chr15	66845367	66845567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009375, intron 45 of 47)	intron (NM_009375, intron 45 of 47)	-13638.0	NM_009192	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53269577-2	chr4	53269477	53269677	+	990.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_033139, intron 1 of 1)	RMER1B|Other|Other	655.0	NR_033139	381524.0	Mm.23351	NM_001033454	ENSMUSG00000086712	AI427809	Gm1659	expressed sequence AI427809	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-99484325-2	chr10	99484225	99484425	+	603.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-124846.0	NR_038019	100504202.0	Mm.403801	NR_038019	ENSMUSG00000111962	Gm20110	-	predicted gene, 20110	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-102025879-3	chr13	102025728	102025928	+	750.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-257611.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-19716545-2	chr4	19716445	19716645	+	564.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_151541)	TTS (NR_151541)	3341.0	NR_151541	102632246.0		NR_151541		Gm12354	-	predicted gene 12354	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-87199682-2	chr12	87199582	87199782	+	805.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290288)	promoter-TSS (NM_001290288)	547.0	NM_001033475	382620.0	Mm.374912	NM_001033475	ENSMUSG00000034111	Tmed8	6430595O10Rik|AI447224|Gm1184|Mem1	transmembrane p24 trafficking protein 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-116175774-4	chr9	116175669	116175869	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009371)	promoter-TSS (NM_009371)	-406.0	NM_029575	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	3.00201573270326	1.84981110952279	2.73472719341297	2.13331691656955	2.8868737963433	2.2884056338424	3.33931079984028	2.95077091797758	0.764283330418384	0.319574131934161	0.821951596143819
Merged-chr10-40476734-4	chr10	40476630	40476830	+	943.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198164, intron 9 of 11)	intron (NM_198164, intron 9 of 11)	-93632.0	NM_027572	70840.0	Mm.332570	NM_027572	ENSMUSG00000019834	Slc22a16	4921504E14Rik|CT2|FLIPT2|OCT6|OKB1	solute carrier family 22 (organic cation transporter), member 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-61423450-3	chr10	61423356	61423556	+	735.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013611, exon 2 of 3)	exon (NM_013611, exon 2 of 3)	5484.0	NM_013611	18119.0	Mm.57195	NM_013611	ENSMUSG00000037171	Nodal	Tg.413d	nodal	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-69557286-3	chr9	69557195	69557395	+	894.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	100351.0	NR_037296	100526560.0		NR_037296	ENSMUSG00000093042	Mir3109	mir-3109|mmu-mir-3109	microRNA 3109	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-21704684-4	chr16	21704595	21704795	+	927.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10030.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-106816002-1	chr7	106815902	106816102	+	562.0	f0_balb.idr	intron (NM_028910, intron 2 of 4)	intron (NM_028910, intron 2 of 4)	1873.0	NM_001360747	66786.0	Mm.159186	NM_028910	ENSMUSG00000036744	Olfr701	4932441H21Rik|4933433E02Rik|MOR283-1	olfactory receptor 701	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-3006023-3	chr9	3005975	3006175	+	773.0476070000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GSAT_MM|Satellite|Satellite	32668.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-58669875-2	chr6	58669775	58669975	+	620.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355477, intron 7 of 15)	RMER13B|LTR|ERVK	73203.0	NM_011920	26357.0	Mm.333096	NM_011920	ENSMUSG00000029802	Abcg2	ABC15|ABCP|AI428558|BCRP|Bcrp1|MXR|MXR1	ATP binding cassette subfamily G member 2 (Junior blood group)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81352567-2	chr10	81352467	81352667	+	908.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-2110.0	NM_001163166	15353.0	Mm.38474	NM_010440	ENSMUSG00000020232	Hmg20b	AW610687|BRAF35|Hmgx2|Hmgxb2|Smarce1r	high mobility group 20B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-26441620-4	chr14	26441535	26441735	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310445, intron 14 of 22)	intron (NM_001310445, intron 14 of 22)	84088.0	NR_038005	71106.0	Mm.158564	NR_038005	ENSMUSG00000021874	4933413J09Rik	GCSE	RIKEN cDNA 4933413J09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-84699657-3	chr18	84699560	84699760	+	834.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR15|LTR|ERVK	-13958.0	NM_023149	66054.0	Mm.29646	NM_023149	ENSMUSG00000024644	Cndp2	0610010E05Rik|C76600|Cn2|Dip-2|Pep-1|Pep1	CNDP dipeptidase 2 (metallopeptidase M20 family)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-44105230-4	chr17	44105124	44105324	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357996, intron 1 of 3)	intron (NM_001357996, intron 1 of 3)	584.0	NM_199016	224794.0	Mm.255971	NM_199016	ENSMUSG00000023961	Enpp4	4933413N07Rik|AA986363|AI195364|E-NPP 4|Gm90	ectonucleotide pyrophosphatase/phosphodiesterase 4	protein-coding	2.03710291682294	3.31443451662703	2.51736432451364	2.87585854586658	2.05443998530248	3.3381448528654	2.53744588938375	2.89065631129301	0.0368066025478756	0.961545483364021	0.998431161219273
Merged-chr11-114911389-2	chr11	114911289	114911489	+	904.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21348.0	NM_170758	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-80483433-1	chr8	80483333	80483533	+	741.0	f0_balb.idr	Intergenic	Intergenic	-10612.0	NM_010369	14934.0	Mm.13123	NM_010369	ENSMUSG00000051839	Gypa	AI853584|CD235a|GPA	glycophorin A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-81314497-2	chr7	81314397	81314597	+	776.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008803, intron 11 of 21)	intron (NM_008803, intron 11 of 21)	30737.0	NM_009092	20068.0	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-55403830-2	chr12	55403730	55403930	+	933.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011968, intron 1 of 6)	B4A|SINE|B4	5005.0	NM_011968	26443.0	Mm.30210	NM_011968	ENSMUSG00000021024	Psma6	IOTA	proteasome (prosome, macropain) subunit, alpha type 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-20508597-1	chr14	20508497	20508697	+	642.0	f0_balb.idr	intron (NM_008914, intron 12 of 13)	intron (NM_008914, intron 12 of 13)	-11696.0	NM_029104	74843.0	Mm.295241	NM_029104	ENSMUSG00000021815	Mss51	4833444M15Rik|Zmynd17	MSS51 mitochondrial translational activator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28369527-2	chr7	28369427	28369627	+	776.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_138752, intron 4 of 18)	B4A|SINE|B4	3135.0	NM_138752	101497.0	Mm.235700	NM_138752	ENSMUSG00000037552	Plekhg2	AI194308|Clg|Cslg	pleckstrin homology domain containing, family G (with RhoGef domain) member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3799217-3	chr4	3799051	3799251	+	857.5833130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36504.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	-0.177733621508433	-0.805752184127899	-0.808838537208662	-0.811215655782965	-0.543043920694761	-0.803068160812789	-0.808158328395888	-0.810800640862464	-1.36685470224649	0.652602213394196	1
Merged-chr12-108992631-2	chr12	108992531	108992731	+	565.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177602, intron 3 of 6)	intron (NM_177602, intron 3 of 6)	75586.0	NM_001163175	380785.0	Mm.342085	NM_001163175	ENSMUSG00000040867	Begain	BM948371|Gm897	brain-enriched guanylate kinase-associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-38188393-2	chr18	38188293	38188493	+	585.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21369.0	NM_029357	75599.0	Mm.36560	NM_029357	ENSMUSG00000051375	Pcdh1	2010005A06Rik|AI585920	protocadherin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-52479394-4	chr6	52479314	52479514	+	892.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13037.0	NR_046049	74304.0	Mm.490579	NR_046049	ENSMUSG00000107895	1700094M24Rik	-	RIKEN cDNA 1700094M24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-34214756-2	chr10	34214656	34214856	+	701.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7205.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-34472550-2	chr19	34472450	34472650	+	696.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	2585.0	NM_009890	12642.0	Mm.30824	NM_009890	ENSMUSG00000050370	Ch25h	AI462618|m25OH	cholesterol 25-hydroxylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-56616488-2	chr8	56616388	56616588	+	757.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	65354.0	NM_015791	50753.0	Mm.251174	NM_015791	ENSMUSG00000038206	Fbxo8	Fbx8	F-box protein 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-33435955-4	chr2	33435857	33436057	+	796.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4633.0	NM_001276332	241311.0	Mm.296512	NM_001085507	ENSMUSG00000068966	Zbtb34	Gm349|mKIAA1993	zinc finger and BTB domain containing 34	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31593680-4	chr14	31593567	31593767	+	955.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	-16284.0	NM_009937	382864.0	Mm.239821	NM_009937	ENSMUSG00000057606	Colq	A130034K24Rik	collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-56777193-4	chr19	56777077	56777277	+	968.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36506.0	NM_170757	213993.0	Mm.469677	NM_170757	ENSMUSG00000035173	Ccdc186	1810028B20Rik|A630007B06Rik|AI159700|Otg1	coiled-coil domain containing 186	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-63044295-4	chr9	63044209	63044409	+	904.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	-63430.0	NM_019663	56469.0	Mm.431253	NM_019663	ENSMUSG00000032405	Pias1	2900068C24Rik|Ddxbp1|GBP	protein inhibitor of activated STAT 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-26916421-4	chr2	26916313	26916513	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013678)	promoter-TSS (NM_013678)	-8.0	NM_013678	20931.0	Mm.389260	NM_013678	ENSMUSG00000014873	Surf2	Surf-2	surfeit gene 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-21534659-4	chr17	21534592	21534792	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144515)	promoter-TSS (NM_144515)	-847.0	NM_144515	22710.0	Mm.296100	NM_144515	ENSMUSG00000051341	Zfp52	KRAB11|Zfp-52|Zfp76|mszf23-2|mszf24|mszf34|mszf75|zfec29	zinc finger protein 52	protein-coding	-1.00154312902962	-0.983875168756707	-0.995652153864547	-0.57280688454704	-1.00102929244372	-0.630477294738325	-0.992986102580295	-0.997719611733061	-0.352911217838324	0.912077471925787	1
Merged-chr1-171069732-2	chr1	171069632	171069832	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5080.0	NR_106103	102466998.0		NR_106103	ENSMUSG00000099119	Mir6546	Gm27408|mmu-mir-6546	microRNA 6546	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95124351-2	chr3	95124251	95124451	+	684.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016712)	promoter-TSS (NM_016712)	-163.0	NM_016712	50874.0	Mm.71935	NM_016712	ENSMUSG00000005628	Tmod4	MTMOD|Sk-Tmod	tropomodulin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-90269108-4	chr9	90269028	90269228	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 1 of 12)	intron (NM_194334, intron 1 of 12)	1641.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-102946773-4	chr11	102946694	102946894	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011795)	promoter-TSS (NM_011795)	-333.0	NM_011795	23829.0	Mm.57154	NM_011795	ENSMUSG00000045532	C1ql1	C1qrf|CRF|CTRP14|gliacolin	complement component 1, q subcomponent-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-4028139-2	chr9	4028039	4028239	+	742.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR9D|LTR|ERVK	281355.0	NM_026276	67618.0	Mm.33970	NM_026276	ENSMUSG00000025894	Aasdhppt	2010309J24Rik|2810407B07Rik|AASD-PPT|CGI-80|LYS2|LYS5	aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152622984-4	chr1	152622839	152623039	+	985.1979369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346119, intron 2 of 17)	intron (NM_001346119, intron 2 of 17)	2278.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-124670097-1	chr2	124669997	124670197	+	548.0	f0_balb.idr	Intergenic	Intergenic	16516.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-75616950-2	chr12	75616850	75617050	+	688.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14799.0	NR_038063	665931.0	Mm.341719	NR_038063		Rplp2-ps1	Gm7852	ribosomal protein, large P2, pseudogene 1	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-84515636-4	chr10	84515557	84515757	+	868.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18231.0	NM_175451	216197.0	Mm.334999	NM_175451	ENSMUSG00000046841	Ckap4	5630400A09Rik|CLIMP-63|P63	cytoskeleton-associated protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-16295009-3	chr1	16294898	16295098	+	819.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111272, intron 11 of 12)	intron (NM_001111272, intron 11 of 12)	189116.0	NM_133832	98711.0	Mm.274376	NM_133832	ENSMUSG00000025921	Rdh10	3110069K09Rik|4921506A21Rik|AI875664|AW549993|D1Ertd762e|m366Asp	retinol dehydrogenase 10 (all-trans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-145104179-2	chr3	145104079	145104279	+	939.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5073.0	NM_178697	229933.0	Mm.331420	NM_178697	ENSMUSG00000036960	Clca2	4732440A06|AI586120|Clca5	chloride channel accessory 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-113518628-4	chr7	113518524	113518724	+	855.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360668, intron 1 of 12)	MIR3|SINE|MIR	4790.0	NM_001360669	67420.0	Mm.206919	NM_026143	ENSMUSG00000030759	Far1	2600011M19Rik|2900034E22Rik|3732409C05Rik|AI850429|Mlstd2	fatty acyl CoA reductase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-104053885-1	chr14	104053785	104053985	+	542.0	f1_c57bl6.idr	Intergenic	Intergenic	-26743.0	NR_045953	73877.0	Mm.399172	NR_045953	ENSMUSG00000115727	4930432J09Rik	-	RIKEN cDNA 4930432J09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-130947536-2	chr4	130947436	130947636	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010769, intron 2 of 7)	intron (NM_010769, intron 2 of 7)	3151.0	NM_010769	17180.0	Mm.271796	NM_010769	ENSMUSG00000040533	Matn1	CMP|Crtm|Mat1|matrilin-1	matrilin 1, cartilage matrix protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-157034422-2	chr2	157034322	157034522	+	546.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164663, intron 6 of 14)	intron (NM_001164663, intron 6 of 14)	-27347.0	NM_025853	66934.0	Mm.25410	NM_025853	ENSMUSG00000027635	Dsn1	1700022L09Rik|AW552447	DSN1 homolog, MIS12 kinetochore complex component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-25048360-2	chr2	25048260	25048460	+	603.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146251, intron 26 of 34)	intron (NM_146251, intron 26 of 34)	-6019.0	NM_001177654	56876.0	Mm.42956	NM_020276	ENSMUSG00000006476	Nsmf	Jacob|Nelf	NMDA receptor synaptonuclear signaling and neuronal migration factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-26354966-2	chr4	26354866	26355066	+	561.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8314.0	NM_172865	242362.0	Mm.245602	NM_172865	ENSMUSG00000040520	Manea	4932703L02Rik	mannosidase, endo-alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-30917610-2	chr5	30917573	30917773	+	720.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_133918, exon 4 of 8)	exon (NM_133918, exon 4 of 8)	-3886.0	NM_001310525	16548.0	Mm.22451	NM_008439	ENSMUSG00000029162	Khk	-	ketohexokinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-128458140-2	chr7	128458040	128458240	+	672.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347640, intron 1 of 11)	intron (NM_001347640, intron 1 of 11)	3373.0	NM_009383	21843.0	Mm.242072	NM_009383	ENSMUSG00000030846	Tial1	5330433G13Rik|AL033329|TIAR|mTIAR	Tia1 cytotoxic granule-associated RNA binding protein-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-36560722-3	chr5	36560619	36560819	+	723.944458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133910, intron 2 of 13)	intron (NM_133910, intron 2 of 13)	21678.0	NM_133910	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19630158-2	chr7	19630058	19630258	+	952.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009046)	promoter-TSS (NM_009046)	-720.0	NM_009046	19698.0	Mm.1741	NM_009046	ENSMUSG00000002983	Relb	shep	avian reticuloendotheliosis viral (v-rel) oncogene related B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3712736-3	chr12	3712655	3712855	+	834.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162465, intron 9 of 17)	intron (NM_001162465, intron 9 of 17)	-94225.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52597385-2	chr13	52597285	52597485	+	881.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011518, intron 1 of 13)	intron (NM_011518, intron 1 of 13)	503.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-108835014-2	chr4	108834914	108835114	+	872.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356361)	promoter-TSS (NM_001356361)	336.0	NM_025334	66073.0	Mm.159965	NM_025334	ENSMUSG00000028567	Txndc12	0610040B21Rik|ERp16|ERp19	thioredoxin domain containing 12 (endoplasmic reticulum)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30557114-2	chr7	30557014	30557214	+	971.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001290569, exon 5 of 9)	exon (NM_001290569, exon 5 of 9)	2532.0	NM_029377	75660.0	Mm.379242	NM_029377	ENSMUSG00000036845	Lin37	1810054G18Rik	lin-37 homolog (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-86894619-4	chr12	86894518	86894718	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9804.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132302402-1	chr4	132302302	132302502	+	541.0	f1_c57bl6.idr	exon (NM_001081651, exon 2 of 2)	exon (NM_001081651, exon 2 of 2)	954.0	NM_001081651	242681.0	Mm.331927	NM_001081651	ENSMUSG00000089687	Rab42	9530096D07Rik|Rab42-ps	RAB42, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-73029803-2	chr17	73029702	73029902	+	919.0	f0_balb.idr|f1_balb.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-78183.0	NM_001177968	225010.0	Mm.329194	NM_001081071	ENSMUSG00000054469	Lclat1	AI181996|Agpat8|Alcat1|Gm91|Lycat	lysocardiolipin acyltransferase 1	protein-coding	2.80328243584426	3.6387576927485	1.69619332334945	3.10096414621535	4.15219091264894	5.26540246648149	3.93153047510629	4.25749773114938	2.16757962265896	0.000244044792755194	0.00629308085347458
Merged-chr5-139774552-2	chr5	139774452	139774652	+	989.625	f1_balb.idr|f1_c57bl6.idr	exon (NM_026748, exon 2 of 47)	exon (NM_026748, exon 2 of 47)	1126.0	NM_026748	68510.0	Mm.292942	NM_026748	ENSMUSG00000029547	Ints1	1110015K06Rik	integrator complex subunit 1	protein-coding	0.603533688323679	1.51714558025507	0.634076218174633	0.622778824641765	0.796587388478606	1.09428529614278	1.84310749655422	1.29166480353644	1.57400777926026	0.300746447982298	0.801975674075776
Merged-chr10-9674834-3	chr10	9674752	9674952	+	570.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177271, exon 1 of 2)	exon (NM_177271, exon 1 of 2)	356.0	NM_177271	320825.0	Mm.101115	NM_177271	ENSMUSG00000060487	Samd5	E130306M17Rik	sterile alpha motif domain containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-107325203-2	chr11	107325043	107325243	+	637.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359616, intron 2 of 8)	B1_Mus1|SINE|Alu	-135762.0	NM_001161329	68979.0	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-17354642-2	chr16	17354542	17354742	+	676.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001983, intron 15 of 54)	intron (NM_001001983, intron 15 of 54)	23271.0	NM_001331047	15160.0	Mm.6609	NM_008223	ENSMUSG00000022766	Serpind1	AA985900|AI303446|HC-II|HCII|Hcf2	serine (or cysteine) peptidase inhibitor, clade D, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-8994498-4	chr15	8994391	8994591	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198024, intron 1 of 13)	(A)n|Simple_repeat|Simple_repeat	26542.0	NM_198024	223332.0	Mm.321371	NM_198024	ENSMUSG00000048424	Ranbp3l	C130037N17Rik	RAN binding protein 3-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-118070297-4	chr3	118070186	118070386	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-201350.0	NM_029655	76561.0	Mm.33824	NM_029655	ENSMUSG00000028007	Snx7	2510028H01Rik	sorting nexin 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-99970389-4	chr14	99970282	99970482	+	931.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010636, intron 4 of 6)	intron (NM_010636, intron 4 of 6)	179414.0	NM_010636	16597.0	Mm.396499	NM_010636	ENSMUSG00000072294	Klf12	2700063E05Rik|AI225908|AI315654|AP-2rep|B130052C06Rik|D530033K05Rik	Kruppel-like factor 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-79171741-3	chr3	79171656	79171856	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-25881.0	NM_001099624	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	2.07523943695552	2.52280250960679	1.31616463694592	1.89550716045583	1.6920047255131	1.10348553525976	1.07941202952935	2.11714941389727	-1.21572641581775	0.290160542971138	0.795360911821054
Merged-chr2-158614680-2	chr2	158614580	158614780	+	684.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_009508, exon 2 of 2)	exon (NM_009508, exon 2 of 2)	3922.0	NM_009508	22348.0	Mm.143404	NM_009508	ENSMUSG00000037771	Slc32a1	R75019|VGAT|Viaat	solute carrier family 32 (GABA vesicular transporter), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-64698646-2	chr17	64698546	64698746	+	742.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008549, intron 12 of 21)	intron (NM_008549, intron 12 of 21)	-68465.0	NR_105051	101202683.0	Mm.393309	NR_105051		Dreh	-	down-regulated in hepatocellular carcinoma	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41086915-4	chr19	41086801	41087001	+	981.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011904, intron 19 of 20)	intron (NM_011904, intron 19 of 20)	-9788.0	NM_153520	226115.0	Mm.54119	NM_153520	ENSMUSG00000050121	Opalin	Tmem10|Tmp10	oligodendrocytic myelin paranodal and inner loop protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-43284443-3	chr9	43284335	43284535	+	961.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24556.0	NM_001243261	235302.0	Mm.135745	NM_001243261		D630033O11Rik	Gm588	RIKEN cDNA D630033O11 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105339155-4	chr8	105339056	105339256	+	931.44165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177699, intron 1 of 21)	intron (NM_177699, intron 1 of 21)	8814.0	NM_177699	234686.0	Mm.87724	NM_177699	ENSMUSG00000014778	Fhod1	BC017144|FHOS|FHOS1	formin homology 2 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-8736319-2	chr6	8736241	8736441	+	591.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252266, intron 5 of 11)	intron (NM_001252266, intron 5 of 11)	22117.0	NM_001252266	15893.0	Mm.275683	NM_010492	ENSMUSG00000062995	Ica1	69kDa|ICA69	islet cell autoantigen 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-51278653-4	chr14	51278554	51278754	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22542.0	NM_053113	93726.0	Mm.153688	NM_053113	ENSMUSG00000047222	Rnase2a	Ear11	ribonuclease, RNase A family, 2A (liver, eosinophil-derived neurotoxin)	protein-coding	4.75021887416032	4.94360154526464	4.49925043065989	5.07727045389396	5.48575126490931	4.68039486116646	4.78173905269272	5.1624780794503	0.291721340866758	0.393088275752635	0.88176613470275
Merged-chr17-34124808-4	chr17	34124698	34124898	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360530)	promoter-TSS (NM_001360530)	-720.0	NM_001360530	14998.0	Mm.16373	NM_010386	ENSMUSG00000037649	H2-DMa	H-2Ma|H2-Ma	histocompatibility 2, class II, locus DMa	protein-coding	2.67281001046252	4.64855263313844	2.24153457583625	3.5400531970247	4.46591488277434	3.07163334211308	4.12771155100924	3.20531490974104	0.34949967777443	0.603567503143107	0.973589491466885
Merged-chr13-24444190-2	chr13	24444090	24444290	+	743.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111110, intron 11 of 16)	intron (NM_001111110, intron 11 of 16)	29068.0	NM_001284520	12763.0	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-23612202-4	chr16	23612120	23612320	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023386, intron 1 of 1)	intron (NM_023386, intron 1 of 1)	2301.0	NM_023386	67775.0	Mm.475107	NM_023386	ENSMUSG00000033355	Rtp4	5830458K16Rik|Ifrg28	receptor transporter protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-77509812-4	chr10	77509706	77509906	+	731.825012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133998, intron 2 of 5)	intron (NM_133998, intron 2 of 5)	6007.0	NM_133998	108707.0	Mm.259547	NM_133998	ENSMUSG00000032977	Fam207a	1810008A18Rik|AI303072	family with sequence similarity 207, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-86899562-2	chr12	86899462	86899662	+	640.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14748.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-25149305-2	chr15	25149205	25149405	+	617.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	264459.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-74926821-2	chr11	74926721	74926921	+	920.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001002764, intron 1 of 18)	intron (NM_001002764, intron 1 of 18)	949.0	NM_001002764	103677.0	Mm.288460	NM_001002764	ENSMUSG00000038290	Smg6	AI317223|AU041178	Smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-58535976-1	chr4	58535876	58536076	+	655.5	f0_c57.idr	intron (NM_010336, intron 1 of 3)	intron (NM_010336, intron 1 of 3)	17317.0	NM_172989	14745.0	Mm.4772	NM_010336	ENSMUSG00000038668	Lpar1	AI326300|Edg2|Gpcr26|Kdt2|lpA1|vzg-1	lysophosphatidic acid receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127851077-4	chr7	127850983	127851183	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	9275.0	NM_009294	20909.0	Mm.24867	NM_009294	ENSMUSG00000030805	Stx4a	Stx4|Syn-4|Syn4	syntaxin 4A (placental)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-105603455-2	chr7	105603355	105603555	+	761.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3339.0	NM_017371	15458.0	Mm.3485	NM_017371	ENSMUSG00000030895	Hpx	Hpxn|hx	hemopexin	protein-coding	0.56969391173577	0.251645380859383	0.402034629578869	0.799477271970546	0.238116895478206	0.700154009526781	0.406449532176394	0.243857875441524	-0.851667343978743	0.650370273651786	1
Merged-chr3-90627611-2	chr3	90627511	90627711	+	666.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER5|LTR|ERV1	14717.0	NM_011313	20200.0	Mm.100144	NM_011313	ENSMUSG00000001025	S100a6	2A9|5B10|CALCYCLIN|Cacy|PRA	S100 calcium binding protein A6 (calcyclin)	protein-coding	-0.700064241511417	-0.186671140929496	-0.692852367725508	-0.695563882069579	-0.699394869705802	-0.177296101845517	-0.692077155152847	-0.695090216270211	0.0394491945098347	0.989215944639676	1
Merged-chr12-91708020-2	chr12	91707920	91708120	+	640.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 4 of 6)	intron (NM_175367, intron 4 of 6)	78416.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-119178490-4	chr4	119178368	119178568	+	938.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013848, exon 13 of 13)	exon (NM_013848, exon 13 of 13)	-4273.0	NM_001145936	195522.0	Mm.169620	NM_183140	ENSMUSG00000045268	Zfp691	6430544H17Rik|Znf691	zinc finger protein 691	protein-coding	5.23261970900513	5.00307377168737	4.42733899010503	5.35214933014327	3.24280285379285	3.20126408353678	3.55014304689965	2.26677110293845	-2.54235817046982	6.05519636366123e-08	5.73554573456901e-06
Merged-chr5-114654169-4	chr5	114654058	114654258	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022017, intron 1 of 15)	MIR3|SINE|MIR	4263.0	NM_022017	63873.0	Mm.266450	NM_022017	ENSMUSG00000014158	Trpv4	0610033B08Rik|OTRPC4|Trp12|VR-OAC|VRL-2|VROAC	transient receptor potential cation channel, subfamily V, member 4	protein-coding	4.40231110099624	3.94597175726148	4.99903105621871	4.48803863657595	4.11389781173615	4.8725223926554	4.44126940368385	4.20221286622962	-0.104117501744587	0.798836882325142	0.998431161219273
Merged-chr7-102222437-4	chr7	102222338	102222538	+	976.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145583)	promoter-TSS (NM_145583)	-590.0	NR_111938	233575.0	Mm.302013	NM_145583	ENSMUSG00000030990	Pgap2	1810006G21Rik|C76649|Frag1	post-GPI attachment to proteins 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-29051739-2	chr2	29051639	29051839	+	589.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166705, intron 1 of 5)	intron (NM_001166705, intron 1 of 5)	3327.0	NM_001166705	329375.0	Mm.425079	NM_001085514	ENSMUSG00000079502	Cfap77	1700101E01Rik|Gm823	cilia and flagella associated protein 77	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-38074328-4	chr15	38074226	38074426	+	897.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001112721, intron 1 of 58)	intron (NM_001112721, intron 1 of 58)	4528.0	NM_001112721	70790.0	Mm.476840	NM_027553	ENSMUSG00000037487	Ubr5	Edd|Edd1	ubiquitin protein ligase E3 component n-recognin 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-24312886-3	chr16	24312781	24312981	+	850.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-80469.0	NM_178665	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-86885910-4	chr10	86885814	86886014	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138673, intron 42 of 68)	intron (NM_138673, intron 42 of 68)	106909.0	NM_175331	103466.0	Mm.200446	NM_175331	ENSMUSG00000054027	Nt5dc3	AU040402|AW540062|C630002B14Rik|TU12B1-TY	5'-nucleotidase domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-78560601-2	chr11	78560501	78560701	+	670.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9866.0	NM_133706	69071.0	Mm.29431	NM_133706	ENSMUSG00000037278	Tmem97	1810014L12Rik|AI115531|AL022956|D11Bhm182e	transmembrane protein 97	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-64945002-4	chr8	64944918	64945118	+	913.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-2167.0	NM_001163747	73067.0	Mm.294445	NM_028427	ENSMUSG00000025521	Tmem192	3110005G23Rik	transmembrane protein 192	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-41047077-4	chr8	41046965	41047165	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005863, intron 5 of 13)	intron (NM_001005863, intron 5 of 13)	-5134.0	NM_001005865	102103.0	Mm.149438	NM_001005863	ENSMUSG00000045636	Mtus1	AI481402|ATBP135|Atip1|B430010I23Rik|B430305I03Rik|C85752|Cctsg1-440|MD44|MTSG1|mKIAA1288	mitochondrial tumor suppressor 1	protein-coding	3.41495517250489	4.09539822263622	4.48415723186493	3.91464113128385	2.24818034428663	2.35941706668826	3.40245301005666	3.75485913155162	-1.36915334814559	0.0232752832256197	0.198900888989305
Merged-chr10-128059816-4	chr10	128059706	128059906	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019766, intron 1 of 7)	CpG	824.0	NM_019766	56351.0	Mm.305816	NM_019766	ENSMUSG00000071072	Ptges3	5730442A20Rik|Ptges|Tebp|cPGES|p23|sid3177	prostaglandin E synthase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65293230-4	chr9	65293131	65293331	+	925.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1029.0	NM_011802	270166.0	Mm.30088	NM_011802	ENSMUSG00000015357	Clpx	AU014732|E330029I21	caseinolytic mitochondrial matrix peptidase chaperone subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-187216873-4	chr1	187216778	187216978	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357645, intron 1 of 9)	intron (NM_001357645, intron 1 of 9)	1135.0	NM_001357645	67769.0	Mm.138321	NM_026367	ENSMUSG00000039210	Gpatch2	5830433G22Rik|5830436K05Rik|AI427714|AI447508|AW107440|AW491060|Gpatc2	G patch domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-76677227-4	chr11	76677121	76677321	+	870.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2652.0	NM_177709	237858.0	Mm.127006	NM_177709	ENSMUSG00000046275	Tusc5	C130069F04Rik|DSPB1|Lost1	tumor suppressor candidate 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-113875925-4	chr13	113875827	113876027	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172595, intron 1 of 4)	intron (NM_172595, intron 1 of 4)	81419.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-94654124-1	chr9	94654024	94654224	+	543.0	f1_balb.idr	Intergenic	Intergenic	-15768.0	NM_177909	331004.0	Mm.326125	NM_177909	ENSMUSG00000031129	Slc9a9	5730527A11Rik|9930105B05|AI854429|Nhe9	solute carrier family 9 (sodium/hydrogen exchanger), member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-49424862-2	chr17	49424762	49424962	+	718.083313	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-3502.0	NM_028464	56738.0	Mm.22256	NM_020042	ENSMUSG00000064120	Mocs1	3110045D15Rik|AI043170|AW536397	molybdenum cofactor synthesis 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126889209-2	chr7	126889109	126889309	+	870.3000490000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_026827, intron 4 of 5)	intron (NM_026827, intron 4 of 5)	-4242.0	NM_001163774	381921.0	Mm.259634	NM_001163774	ENSMUSG00000059981	Taok2	1110033K02Rik|B230344N16|MAP3K17|PSK|PSK1|TAO1|TAO2|mKIAA0881	TAO kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-123092120-2	chr8	123092020	123092220	+	629.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153176, intron 13 of 16)	intron (NM_153176, intron 13 of 16)	-10230.0	NM_016738	270106.0	Mm.319719	NM_016738	ENSMUSG00000000740	Rpl13	A52|L13	ribosomal protein L13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-53253156-2	chr18	53253056	53253256	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029394, intron 1 of 6)	intron (NM_029394, intron 1 of 6)	7494.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-7241203-4	chr19	7241093	7241293	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027643)	promoter-TSS (NM_027643)	29.0	NM_027643	70999.0	Mm.329605	NM_027643	ENSMUSG00000024764	Naa40	4931433E08Rik|AU023197|Nat11|NatD	N(alpha)-acetyltransferase 40, NatD catalytic subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116808407-3	chr11	116808281	116808481	+	881.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347633, intron 4 of 4)	intron (NM_001347633, intron 4 of 4)	19665.0	NM_026280	67622.0	Mm.64962	NM_026280	ENSMUSG00000020814	Mxra7	1810057P16Rik|E130302J09Rik	matrix-remodelling associated 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-72135211-4	chr8	72135157	72135357	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001001491)	promoter-TSS (NM_001001491)	-35.0	NM_001001491	326618.0	Mm.295124	NM_001001491	ENSMUSG00000031799	Tpm4	2610528G24Rik|Tpm4.2|Tpm4.2cy	tropomyosin 4	protein-coding	2.04570545511014	1.89692589897054	1.97976937232651	1.20040408353229	1.9576961654808	1.73157362032395	2.82343168435708	2.05845743476202	1.01784073030581	0.306751861917345	0.807343266880149
Merged-chr8-72351636-2	chr8	72351536	72351736	+	614.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007944, intron 22 of 23)	intron (NM_007944, intron 22 of 23)	32574.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129393742-1	chr2	129393642	129393842	+	596.0	f0_c57.idr	Intergenic	Intergenic	-22603.0	NM_008361	16176.0	Mm.222830	NM_008361	ENSMUSG00000027398	Il1b	IL-1beta|Il-1b	interleukin 1 beta	protein-coding	3.7665179625827	1.74574314477329	2.66792348620088	2.8761354944935	1.94948891071121	2.37776466087122	2.79686637898963	1.86793992911898	-1.28926281690338	0.123819690542711	0.551658122846446
Merged-chr6-135951837-1	chr6	135951737	135951937	+	841.6666869999999	f0_c57.idr	intron (NM_008171, intron 4 of 14)	intron (NM_008171, intron 4 of 14)	221674.0	NM_008171	14812.0	Mm.436649	NM_008171	ENSMUSG00000030209	Grin2b	AW490526|GluN2B|NR2B|Nmdar2b	glutamate receptor, ionotropic, NMDA2B (epsilon 2)	protein-coding	2.88702486497523	3.06911370456727	1.78151650336385	2.61769619539806	2.76595276860222	2.56358169891612	2.47988035490477	2.4050701484532	-0.24004664624465	0.756291761078728	0.998431161219273
Merged-chr12-87419268-2	chr12	87419168	87419368	+	586.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18489.0	NR_037228	100526546.0		NR_037228	ENSMUSG00000105428	Mir3068	mir-3068|mmu-mir-3068	microRNA 3068	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-154943354-2	chr4	154943254	154943454	+	611.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15277.0	NM_178931	230979.0	Mm.215147	NM_178931	ENSMUSG00000042333	Tnfrsf14	Atar|HveA|Hvem|Tnfrs14	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-116127489-2	chr3	116127389	116127589	+	936.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_011693, intron 2 of 8)	intron (NM_011693, intron 2 of 8)	2199.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-98321973-2	chr7	98321873	98322073	+	563.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360615)	promoter-TSS (NM_001360615)	-765.0	NM_001360615	66190.0	Mm.334041	NM_025408	ENSMUSG00000030760	Acer3	1110057L18Rik|5430429L08Rik|AV015045|Phca|aPHC	alkaline ceramidase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-84071648-2	chr17	84071548	84071748	+	819.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-7012.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-82858651-4	chr10	82858568	82858768	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015762)	promoter-TSS (NM_015762)	-538.0	NM_001042513	50493.0	Mm.210155	NM_015762	ENSMUSG00000020250	Txnrd1	TR|TR1|TrxR1	thioredoxin reductase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-37451679-4	chr13	37451588	37451788	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	106343.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-106791620-4	chr6	106791506	106791706	+	995.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021449, intron 4 of 10)	intron (NM_021449, intron 4 of 10)	8481.0	NM_021449	58799.0	Mm.290085	NM_021449	ENSMUSG00000005362	Crbn	2610203G15Rik|2900045O07Rik|AF229032|AW108261|piL	cereblon	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107746710-2	chr9	107746602	107746802	+	662.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153190, intron 16 of 23)	intron (NR_153190, intron 16 of 23)	24300.0	NM_148930	83486.0	Mm.259197	NM_148930	ENSMUSG00000032580	Rbm5	D030069N10Rik	RNA binding motif protein 5	protein-coding	1.28434209154379	2.59153761210382	1.2416945558347	0.745159744264405	0.717636103451721	1.92728841135379	1.43472137474958	0.74846473054322	-1.02220050208669	0.455065323754363	0.919253057979521
Merged-chr4-118620835-4	chr4	118620699	118620899	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026789)	promoter-TSS (NM_026789)	0.0	NM_026932	69072.0	Mm.29906	NM_026932	ENSMUSG00000028729	Ebna1bp2	1810014B19Rik|AA537058|B830003A16Rik|C81321|Ebp2|Nobp|p40	EBNA1 binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-23752277-4	chr13	23752174	23752374	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178203)	promoter-TSS (NM_178203)	-106.0	NM_178203	319150.0		NM_178203	ENSMUSG00000069267	Hist1h3b	H3-53	histone cluster 1, H3b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-138140162-4	chr6	138140064	138140264	+	877.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019946)	promoter-TSS (NM_019946)	-363.0	NM_001361308	56615.0	Mm.14796	NM_019946	ENSMUSG00000008540	Mgst1	1500002K10Rik|Gst	microsomal glutathione S-transferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-58980009-4	chr19	58979906	58980106	+	921.271423	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175172, intron 14 of 14)	intron (NM_175172, intron 14 of 14)	-36334.0	NM_001327998	73442.0	Mm.39739	NM_175199	ENSMUSG00000025092	Hspa12a	1700063D12Rik|AI118035|AI840429|AW048913|AW556406|D5Mgi40|Gm19925|mKIAA0417	heat shock protein 12A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-118941265-4	chr14	118941086	118941286	+	861.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008929, intron 1 of 11)	intron (NM_008929, intron 1 of 11)	3254.0	NM_008929	100037258.0	Mm.12616	NM_008929	ENSMUSG00000022136	Dnajc3	AA408985|AU067833|Dnajc3a|Dnajc3b|Prkri|mp58|p58|p58IPK	DnaJ heat shock protein family (Hsp40) member C3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100640219-4	chr11	100640126	100640326	+	616.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177790, intron 1 of 7)	CpG	10467.0	NM_177790	278304.0	Mm.274734	NM_177790	ENSMUSG00000014198	Zfp385c	A930006D11Rik|Znf385c	zinc finger protein 385C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-11335478-1	chr8	11335378	11335578	+	554.0	f0_balb.idr	intron (NM_009932, intron 3 of 47)	intron (NM_009932, intron 3 of 47)	-22652.0	NM_009931	12826.0	Mm.738	NM_009931	ENSMUSG00000031502	Col4a1	Bru|Col4a-1|Raw|Svc	collagen, type IV, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-77515822-3	chr11	77515701	77515901	+	668.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026185, exon 1 of 2)	exon (NM_026185, exon 1 of 2)	684.0	NM_026185	67477.0	Mm.432526	NM_026185	ENSMUSG00000000686	Abhd15	1300007F04Rik	abhydrolase domain containing 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-97727366-3	chr15	97727280	97727480	+	966.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168693, intron 1 of 9)	intron (NM_001168693, intron 1 of 9)	4025.0	NM_001168693	19011.0	Mm.1001	NM_008902	ENSMUSG00000022468	Endou	Pp11r|Tcl-30	endonuclease, polyU-specific	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-92394421-2	chr16	92394321	92394521	+	560.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019466, intron 3 of 3)	intron (NM_019466, intron 3 of 3)	5657.0	NM_019466	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-127219357-4	chr1	127219244	127219444	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145128, intron 1 of 17)	MIRc|SINE|MIR	14358.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	3.52911024552449	3.81204916457847	3.68562033800518	3.9502332017537	2.54744080564946	3.68253432963322	4.37427152918036	1.64556890635922	-0.444384238517375	0.519916618593942	0.947641799425091
Merged-chr15-50750512-2	chr15	50750412	50750612	+	991.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310481, intron 4 of 5)	intron (NM_001310481, intron 4 of 5)	138537.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-62000562-2	chr15	62000462	62000662	+	700.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15221.0	NM_001177352	17869.0	Mm.2444	NM_010849	ENSMUSG00000022346	Myc	AU016757|Myc2|Niard|Nird|bHLHe39	myelocytomatosis oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-30679243-2	chr5	30679143	30679343	+	960.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2B2|LTR|ERVL	12357.0	NR_126074	12615.0	Mm.290563	NM_007681	ENSMUSG00000029177	Cenpa	Cenp-A	centromere protein A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96580330-4	chr3	96580240	96580440	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027241, intron 5 of 7)	intron (NM_027241, intron 5 of 7)	-13539.0	NR_040409	100038464.0	Mm.475126	NR_040409	ENSMUSG00000074398	Gm15441	-	predicted gene 15441	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-85332845-1	chr9	85332745	85332945	+	573.0	f1_balb.idr	Intergenic	Intergenic	-5695.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	-1.31349849087795	-1.28274354783242	-1.29349452597086	-1.3023256995151	-1.3130151546297	-1.28041376602105	-0.694015972326031	-1.30074492367298	2.57396649482007	0.456321314346772	1
Merged-chr15-39606680-4	chr15	39606585	39606785	+	950.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053271, intron 21 of 26)	intron (NM_053271, intron 21 of 26)	-52826.0	NM_001256384	116838.0	Mm.309296	NM_053271	ENSMUSG00000037386	Rims2	2810036I15Rik|AW048769|RIM2|Rab3ip2|Rim2(+40A)|Rim2(+44A)|Rim2(+4A)|Serg2|Syt3-rs|mKIAA0751	regulating synaptic membrane exocytosis 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-15880355-3	chr9	15880255	15880455	+	943.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5799.0	NM_145712	244701.0	Mm.222631	NM_145712	ENSMUSG00000050901	Mtnr1b	Mel-1B-R|Mel1b|Mt2	melatonin receptor 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-46261458-2	chr4	46261358	46261558	+	623.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65147.0	NM_011728	22590.0	Mm.247036	NM_011728	ENSMUSG00000028329	Xpa	AI573865|Xpac	xeroderma pigmentosum, complementation group A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-25776071-2	chr17	25775971	25776171	+	941.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026238, intron 2 of 10)	intron (NM_026238, intron 2 of 10)	2295.0	NM_026238	67563.0	Mm.24201	NM_026238	ENSMUSG00000002280	Narfl	9030612I22Rik|AI504405|PRN	nuclear prelamin A recognition factor-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-38224167-4	chr19	38224095	38224295	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081075)	promoter-TSS (NM_001081075)	-63.0	NM_001081075	70567.0	Mm.30607	NM_001081075	ENSMUSG00000054237	Fra10ac1	5730455O13Rik|AI448293	FRA10AC1 homolog (human)	protein-coding	4.76356638395676	3.66702548618807	4.30445544465651	4.29861188193587	5.02481202649108	4.69545147897424	4.14821302626838	4.83925996663512	0.497835298798038	0.220660417153394	0.711835678575402
Merged-chr1-184731827-3	chr1	184731685	184731885	+	931.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008250, exon 1 of 4)	exon (NM_008250, exon 1 of 4)	708.0	NM_008250	15284.0	Mm.1347	NM_008250	ENSMUSG00000039377	Hlx	Hlx1	H2.0-like homeobox	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-4143039-2	chr7	4142939	4143139	+	631.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172736, intron 8 of 14)	intron (NM_172736, intron 8 of 14)	5983.0	NM_172736	232798.0	Mm.22831	NM_172736	ENSMUSG00000035545	Leng8	AW049671	leukocyte receptor cluster (LRC) member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-50192576-4	chr17	50192459	50192659	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2062.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-64226231-4	chr1	64226118	64226318	+	995.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-104829.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-63612287-4	chr15	63612194	63612394	+	923.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-132686.0	NR_045279	432958.0	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	2.4985821486369	1.36521988199522	1.32419611933547	1.48245581798209	2.46224139173992	1.76895729937862	1.98538106722239	1.06261397912479	0.347283112566237	0.759405900497368	0.998431161219273
Merged-chr1-176832770-4	chr1	176832646	176832846	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357390, intron 5 of 18)	intron (NM_001357390, intron 5 of 18)	3387.0	NR_037996	15365.0	Mm.441435	NR_037996		Hmga2-ps1	EG666235|Gm7996|Hmgic-ps1|[y]i-c	high mobility group AT-hook 2, pseudogene 1	pseudo	5.15280342673849	5.18945211999546	5.17210414670944	4.94732418906259	4.8555364349533	4.26997711116366	3.70880874507223	4.70366955785747	-0.793307631954608	0.0283974477868762	0.228461720080648
Merged-chr10-86859884-1	chr10	86859784	86859984	+	588.0	f1_balb.idr	intron (NM_138673, intron 56 of 68)	intron (NM_138673, intron 56 of 68)	80879.0	NM_175331	103466.0	Mm.200446	NM_175331	ENSMUSG00000054027	Nt5dc3	AU040402|AW540062|C630002B14Rik|TU12B1-TY	5'-nucleotidase domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-56776982-2	chr14	56776882	56777082	+	640.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025682, intron 1 of 8)	intron (NM_025682, intron 1 of 8)	1336.0	NM_001360420	66645.0	Mm.20129	NM_025682	ENSMUSG00000021938	Pspc1	5730470C09Rik|AI327109|AI449052|PSP1	paraspeckle protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-5772660-4	chr2	5772561	5772761	+	985.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57899.0	NM_177343	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	2.80024853813429	2.53072983181737	3.21098902681886	3.46196369241921	2.63155106958157	3.56956761170778	2.10419579727341	2.52668323090066	-0.4021326409215	0.576231713881069	0.965286201225318
Merged-chr6-91684706-2	chr6	91684606	91684806	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009320, intron 1 of 14)	intron (NM_009320, intron 1 of 14)	639.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-82351508-4	chr8	82351412	82351612	+	881.1749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008357, intron 2 of 7)	B3A|SINE|B2	51074.0	NM_001254747	16168.0	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	2.07387488045602	2.43547162911746	1.08876257586125	1.48049486399698	1.81025421189065	1.91094670458718	1.97127414523385	1.07346413957316	-0.398644742281225	0.728307044781784	0.998431161219273
Merged-chr12-100352291-4	chr12	100352173	100352373	+	744.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033213, intron 16 of 19)	intron (NM_001033213, intron 16 of 19)	75664.0	NR_045741	100038713.0	Mm.470751	NR_045741	ENSMUSG00000113679	Gm10432	-	predicted gene 10432	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-67876973-4	chr14	67876859	67877059	+	948.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177780, intron 2 of 51)	intron (NM_177780, intron 2 of 51)	-17214.0	NR_105857	102465310.0		NR_105857	ENSMUSG00000098866	Mir6539	Gm27464|mir-6539|mmu-mir-6539	microRNA 6539	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-97009986-2	chr5	97009886	97010086	+	662.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_080708, intron 1 of 15)	ORR1E|LTR|ERVL-MaLR	12297.0	NM_080708	140780.0	Mm.281490	NM_080708	ENSMUSG00000034663	Bmp2k	4933417M22Rik|AA673486|AV128808|BIKE	BMP2 inducible kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-26444573-3	chr2	26444479	26444679	+	859.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153125, intron 1 of 29)	intron (NM_153125, intron 1 of 29)	637.0	NM_153125	227648.0	Mm.206371	NM_153125	ENSMUSG00000026924	Sec16a	AU024582|C230052J16Rik	SEC16 homolog A, endoplasmic reticulum export factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-87549609-4	chr1	87549572	87549772	+	891.979126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111314, intron 1 of 14)	intron (NM_001111314, intron 1 of 14)	24198.0	NM_001111314	53972.0	Mm.435439	NM_019867	ENSMUSG00000026259	Ngef	Tims2|ephexin	neuronal guanine nucleotide exchange factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16223086-3	chr7	16222920	16223120	+	792.266663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027883)	promoter-TSS (NM_027883)	-988.0	NM_027883	71723.0	Mm.75259	NM_027883	ENSMUSG00000006019	Dhx34	1200013B07Rik|1810012L18Rik|Ddx34|mKIAA0134	DEAH (Asp-Glu-Ala-His) box polypeptide 34	protein-coding	0.592863575848357	0.323238032293003	0.31484149093423	0.308310796413379	1.29667274001453	0.325120563423983	0.9444881932885	0.647819392055292	2.97610758969507	0.116701964763902	1
Merged-chr9-113783919-4	chr9	113783826	113784026	+	820.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114347, intron 6 of 39)	intron (NM_001114347, intron 6 of 39)	-9404.0	NM_001286603	76499.0	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-58479390-3	chr13	58479311	58479511	+	586.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-76068.0	NM_001301341	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64797055-2	chr5	64796955	64797155	+	598.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-6468.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-43871571-2	chr10	43871471	43871671	+	683.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	30165.0	NM_001081054	76563.0	Mm.5904	NM_001081054	ENSMUSG00000019863	Qrsl1	2700038P16Rik|C80053|GatA	glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21551481-2	chr9	21551381	21551581	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153141, intron 1 of 14)	intron (NM_153141, intron 1 of 14)	4587.0	NM_153141	59035.0	Mm.178115	NM_021531	ENSMUSG00000032185	Carm1	Prmt4	coactivator-associated arginine methyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-137408942-2	chr6	137408842	137409042	+	777.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011216, intron 12 of 26)	PB1D10|SINE|Alu	-1779.0	NM_001164402	19277.0	Mm.186361	NM_011216	ENSMUSG00000030223	Ptpro	D28|GLEPP1|PTPBK|PTPROt|PTPU2|PTPoc|PTPphi|Ptpn15|R-PTP-O	protein tyrosine phosphatase, receptor type, O	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-64966324-4	chr12	64966249	64966449	+	980.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025707)	promoter-TSS (NM_025707)	607.0	NM_177805	328108.0	Mm.138465	NM_177805	ENSMUSG00000035614	Togaram1	A430041B07Rik|BC062107|C130034K06|Fam179b|mKIAA0423	TOG array regulator of axonemal microtubules 1	protein-coding	2.098418433595	2.34912461216831	2.63662308034455	3.11092309629439	1.97476719805378	2.36615368111038	2.28889718782688	2.92270557570283	-0.359350427234443	0.654892234629	0.988005984240273
Merged-chr7-141577865-2	chr7	141577765	141577965	+	811.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357068, intron 1 of 21)	ORR1B1-int|LTR|ERVL-MaLR	15685.0	NM_007459	11772.0	Mm.253090	NM_007459	ENSMUSG00000002957	Ap2a2	2410074K14Rik|AF006990|AW146353|Adtab|C78001|L25	adaptor-related protein complex 2, alpha 2 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139326425-2	chr5	139326325	139326525	+	848.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172723)	promoter-TSS (NM_172723)	-961.0	NM_172723	231821.0	Mm.297819	NM_172723	ENSMUSG00000056413	Adap1	4930431P11Rik|Centa1|GC1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97449938-4	chr6	97449818	97450018	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	9368.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-118126083-3	chr2	118125992	118126192	+	751.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011580, exon 22 of 22)	3' UTR (NM_011580, exon 22 of 22)	14216.0	NM_001313914	21825.0	Mm.4159	NM_011580	ENSMUSG00000040152	Thbs1	TSP-1|TSP1|Thbs-1|tbsp1	thrombospondin 1	protein-coding	-0.906278453279413	-0.407431447964563	-1.048208294768	-1.05352992943534	-1.05671119907732	-1.03350740516421	-1.04547307017549	-1.05313686373073	-2.88793990269837	0.350705703949045	1
Merged-chr15-64046065-4	chr15	64045957	64046157	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360037, intron 1 of 11)	intron (NM_001360037, intron 1 of 11)	13707.0	NM_001360038	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-79409484-4	chr15	79409383	79409583	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6180.0	NM_172608	223693.0	Mm.323358	NM_172608	ENSMUSG00000009035	Tmem184b	2610507A11|4732495E13Rik	transmembrane protein 184b	protein-coding	3.57141868512953	3.7251868959645	3.0966335386785	2.89961268514712	3.88732038581209	3.51825138918435	2.75400734958302	2.35073118930618	-0.141234204536428	0.826007767626976	0.998431161219273
Merged-chr1-170255707-4	chr1	170255602	170255802	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_151590)	promoter-TSS (NR_151590)	37.0	NR_151590	622708.0	Mm.389210	NR_151590	ENSMUSG00000096964	Gm6345	EG622708	predicted gene 6345	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111912003-4	chr12	111911944	111912144	+	764.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-3989.0	NM_011625	21981.0	Mm.313076	NM_011625	ENSMUSG00000021285	Ppp1r13b	AI449786|ASPP1|AW545810|Tp53bp2|Trp53bp2|p85	protein phosphatase 1, regulatory (inhibitor) subunit 13B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-41596826-2	chr10	41596726	41596926	+	719.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358562, intron 30 of 47)	RMER10A|LTR|ERVL	28810.0	NR_045341	70538.0	Mm.399807	NR_045341	ENSMUSG00000091370	5730435O14Rik	-	RIKEN cDNA 5730435O14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44374970-2	chr7	44374870	44375070	+	814.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027049)	promoter-TSS (NM_027049)	60.0	NM_027049	69349.0	Mm.358922	NM_027049	ENSMUSG00000008028	1700008O03Rik	-	RIKEN cDNA 1700008O03 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30418585-1	chr7	30418485	30418685	+	547.0	f1_c57bl6.idr	intron (NM_011827, intron 2 of 3)	intron (NM_011827, intron 2 of 3)	1269.0	NM_011827	23900.0	Mm.379050	NM_011827	ENSMUSG00000064109	Hcst	DAP10|KAP10	hematopoietic cell signal transducer	protein-coding	1.90060556668319	1.30965065563517	1.41373597587943	0.877549458072284	1.52802656016388	1.61394986329865	0.892013262105898	1.23902288755623	-0.319677337267913	0.807027571205621	0.998431161219273
Merged-chr9-16358019-3	chr9	16357918	16358118	+	955.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080814, intron 1 of 24)	intron (NM_001080814, intron 1 of 24)	20213.0	NM_001080814	270120.0	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT atypical cadherin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-74954044-3	chr5	74953932	74954132	+	809.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045866, intron 1 of 4)	intron (NR_045866, intron 1 of 4)	4838.0	NR_045866	619945.0	Mm.359372	NM_001037908	ENSMUSG00000072874	Gm6116	EG619945	predicted gene 6116	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-58399270-4	chr7	58399160	58399360	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-258942.0	NM_009728	11982.0	Mm.135129	NM_009728	ENSMUSG00000025324	Atp10a	Atp10c|pfatp	ATPase, class V, type 10A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-102451209-4	chr5	102451088	102451288	+	692.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30203.0	NM_146161	231532.0	Mm.440191	NM_029270	ENSMUSG00000057315	Arhgap24	0610025G21Rik	Rho GTPase activating protein 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-135654571-4	chr7	135654402	135654602	+	825.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316681, intron 3 of 17)	intron (NM_001316681, intron 3 of 17)	-2188.0	NR_015548	67765.0	Mm.445272	NR_015548	ENSMUSG00000097471	5830432E09Rik	-	RIKEN cDNA 5830432E09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-54939375-2	chr6	54939275	54939475	+	596.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_172729, exon 5 of 12)	exon (NM_172729, exon 5 of 12)	32286.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-92445934-2	chr16	92445834	92446034	+	642.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081549, intron 1 of 3)	intron (NM_001081549, intron 1 of 3)	20235.0	NM_001081549	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-9401045-1	chr14	9400945	9401145	+	674.0	f0_balb.idr	Intergenic	Intergenic	-483050.0	NR_030680	100042415.0	Mm.235938	NR_030680	ENSMUSG00000089686	Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-53402050-1	chr15	53401950	53402150	+	545.0	f1_balb.idr	Intergenic	Lx8|LINE|L1	-55867.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-34046567-4	chr13	34046469	34046669	+	992.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026512, intron 2 of 6)	intron (NM_026512, intron 2 of 6)	8928.0	NM_026512	68021.0	Mm.140243	NM_026512	ENSMUSG00000038286	Bphl	2010012D11Rik|5730533B08Rik|AI115341	biphenyl hydrolase-like (serine hydrolase, breast epithelial mucin-associated antigen)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-45666362-4	chr16	45666265	45666465	+	974.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172455, intron 12 of 17)	Lx7|LINE|L1	-12247.0	NM_145389	212998.0	Mm.97511	NM_145389	ENSMUSG00000033187	BC016579	-	cDNA sequence, BC016579	protein-coding	1.9164734614918	1.26183338365594	2.59916685471204	3.23119741301952	1.13786904327061	2.02322640225054	1.94876756761488	3.24780838404808	-0.241651227388462	0.817783221397158	0.998431161219273
Merged-chr10-42697232-4	chr10	42697119	42697319	+	828.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172416, intron 4 of 5)	intron (NM_172416, intron 4 of 5)	18303.0	NM_172416	14628.0	Mm.46636	NM_172416	ENSMUSG00000038280	Ostm1	1200002H13Rik|HSPC019|gl	osteopetrosis associated transmembrane protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171065968-2	chr1	171065868	171066068	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1316.0	NR_106103	102466998.0		NR_106103	ENSMUSG00000099119	Mir6546	Gm27408|mmu-mir-6546	microRNA 6546	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-14175205-2	chr9	14175105	14175305	+	610.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-101096.0	NM_030261	75747.0	Mm.325126	NM_030261	ENSMUSG00000032009	Sesn3	5630400E15Rik|BC003348|SEST3	sestrin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-136468580-4	chr6	136468492	136468692	+	814.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50259.0	NM_019426	54343.0	Mm.173271	NM_019426	ENSMUSG00000030213	Atf7ip	2610204M12Rik|AM|Mcaf1	activating transcription factor 7 interacting protein	protein-coding	1.78540879934551	2.56407328171071	2.47132982384812	1.39031565666522	3.03225232649722	2.58431454426012	3.71017914294497	3.38335315822977	2.13085277741172	0.00707549729733097	0.0855546223792597
Merged-chr15-6653596-2	chr15	6653496	6653696	+	766.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011815, intron 15 of 17)	intron (NM_011815, intron 15 of 17)	707.0	NR_155272	102632231.0	Mm.444780	NR_155272		LOC102632231	-	uncharacterized LOC102632231	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-12939342-4	chr18	12939246	12939446	+	858.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207530, intron 1 of 27)	intron (NM_207530, intron 1 of 27)	2495.0	NM_207530	64291.0	Mm.259470	NM_020573	ENSMUSG00000044252	Osbpl1a	G430090F17Rik|Gm753|ORP-1|Osbpl1b	oxysterol binding protein-like 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55536383-2	chr14	55536283	55536483	+	751.200012	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3883.0	NM_028994	74551.0	Mm.29856	NM_028994	ENSMUSG00000040618	Pck2	1810010O14Rik|9130022B02Rik|PEPCK-M	phosphoenolpyruvate carboxykinase 2 (mitochondrial)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-5589834-4	chr6	5589721	5589921	+	943.9833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-93543.0	NM_013743	27273.0	Mm.235547	NM_013743	ENSMUSG00000019577	Pdk4	AV005916	pyruvate dehydrogenase kinase, isoenzyme 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-150787445-4	chr2	150787344	150787544	+	934.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153781, intron 1 of 19)	intron (NM_153781, intron 1 of 19)	648.0	NM_153781	110078.0	Mm.222584	NM_153781	ENSMUSG00000033059	Pygb	-	brain glycogen phosphorylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-104465618-3	chr7	104465504	104465704	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr	promoter-TSS (NM_009099)	promoter-TSS (NM_009099)	-411.0	NM_009099	20128.0	Mm.295578	NM_009099	ENSMUSG00000030921	Trim30a	Rpt-1|Rpt1|Trim30	tripartite motif-containing 30A	protein-coding	3.50074047685149	2.29857547955859	1.96936739857173	3.32016216042845	3.46590631416805	3.87715788594223	3.8185188239144	4.33497391467302	1.47049120454546	0.0185653395202215	0.170556618348865
Merged-chr2-136915236-4	chr2	136915115	136915315	+	999.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355671, intron 2 of 6)	intron (NM_001355671, intron 2 of 6)	15864.0	NM_001038641	74243.0	Mm.330612	NM_028201	ENSMUSG00000027281	Slx4ip	2210009G21Rik|2410004I22Rik|C85661|Slxip	SLX4 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-55364099-3	chr4	55363999	55364199	+	856.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009011, intron 1 of 9)	MIRc|SINE|MIR	14057.0	NM_009011	19359.0	Mm.196846	NM_009011	ENSMUSG00000028426	Rad23b	0610007D13Rik|AV001138|HR23B|mHR23B|p58	RAD23 homolog B, nucleotide excision repair protein	protein-coding	2.38395358968358	3.42870963188648	3.87910334729425	3.30615876117022	3.07979103368668	2.87603630995248	3.42723131791479	3.90204581322509	0.0563280652535531	0.928031572124168	0.998431161219273
Merged-chr11-20113411-2	chr11	20113306	20113506	+	1000.0	f0_balb.idr|f1_balb.idr	promoter-TSS (NM_146243)	promoter-TSS (NM_146243)	-455.0	NM_146243	66713.0	Mm.259045	NM_146243	ENSMUSG00000020152	Actr2	4921510D23Rik|AA409782|Arp2|D6Ertd746e	ARP2 actin-related protein 2	protein-coding	4.61929051510572	4.35320779069322	4.39786540371372	5.22014839380468	5.64422097782883	4.90321434439683	5.60292205916545	5.55727140824761	0.899756163708276	0.0077463437273799	0.0909993133561724
Merged-chr8-34124125-4	chr8	34124008	34124208	+	733.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001126314, exon 3 of 3)	exon (NM_001126314, exon 3 of 3)	9078.0	NM_001126314	234155.0	Mm.324008	NM_001126314	ENSMUSG00000071113	Mboat4	GOAT|Gm171	membrane bound O-acyltransferase domain containing 4	protein-coding	-2.05752322593321	-2.15521190974092	-2.16307242109104	-2.16952927915413	-2.17938029103484	-2.15350850414045	-2.16129297361887	-2.16837350464794	-0.683654500252594	0.846597994014493	1
Merged-chr13-41595356-1	chr13	41595256	41595456	+	592.0	f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-10860.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-16965851-4	chr6	16965754	16965954	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-67413.0	NM_031198	21426.0	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80105852-2	chr7	80105752	80105952	+	546.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_173011, intron 1 of 10)	intron (NM_173011, intron 1 of 10)	9498.0	NM_173011	269951.0	Mm.246432	NM_173011	ENSMUSG00000030541	Idh2	E430004F23|IDPm|Idh-2	isocitrate dehydrogenase 2 (NADP+), mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-25882726-2	chr18	25882626	25882826	+	782.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-128569.0	NM_001362334	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-64850502-2	chr8	64850402	64850602	+	678.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178633)	promoter-TSS (NM_178633)	-578.0	NM_178633	77113.0	Mm.350347	NM_178633	ENSMUSG00000031605	Klhl2	6030411N21Rik|8530402H02Rik|ABP-KELCH|AU020744|Mav	kelch-like 2, Mayven	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-87863402-4	chr4	87863294	87863494	+	654.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027326, intron 4 of 10)	intron (NM_027326, intron 4 of 10)	-57071.0	NM_029931	70122.0	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-115704442-4	chr3	115704342	115704542	+	725.908325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10613.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	2.33453748000228	2.62276330533719	2.4104006993168	3.34968127239656	1.61377258819218	2.36907291603653	2.7678100369791	2.35413135856236	-0.858935844258185	0.293576827800008	0.797871061600232
Merged-chr5-52133021-4	chr5	52132911	52133111	+	861.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3006.0	NR_105845	102466648.0		NR_105845	ENSMUSG00000098726	Mir6417	Gm27334|mmu-mir-6417	microRNA 6417	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-7847090-1	chr6	7846990	7847190	+	540.0	f1_c57bl6.idr	intron (NM_052993, intron 1 of 3)	intron (NM_052993, intron 1 of 3)	1866.0	NM_052993	94192.0	Mm.102752	NM_052993	ENSMUSG00000042460	C1galt1	2210410E06Rik|AV284120|T-synthase	core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-118504558-3	chr14	118504465	118504665	+	905.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163676, intron 26 of 29)	intron (NM_001163676, intron 26 of 29)	87907.0	NR_105815	102465208.0		NR_105815	ENSMUSG00000098433	Mir6391	Gm27914|mmu-mir-6391	microRNA 6391	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-172477940-3	chr2	172477858	172478058	+	949.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5404.0	NM_029608	76426.0	Mm.46148	NM_029608	ENSMUSG00000027505	Fam209	1700029J11Rik	family with sequence similarity 209	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-73911342-4	chr2	73911241	73911441	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175015)	promoter-TSS (NM_175015)	-15.0	NM_001301722	228033.0	Mm.2966	NM_175015	ENSMUSG00000018770	Atp5g3	6030447M23	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96475301-3	chr3	96475301	96475501	+	618.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23095.0	NM_001256181	329716.0	Mm.275223	NM_183223	ENSMUSG00000046317	BC107364	D730018G16	cDNA sequence BC107364	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-72898748-2	chr17	72898653	72898853	+	761.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19552.0	NM_029999	77889.0	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-17889880-4	chr17	17889775	17889975	+	978.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008039, intron 1 of 1)	intron (NM_008039, intron 1 of 1)	2051.0	NM_008039	14289.0	Mm.378918	NM_008039	ENSMUSG00000052270	Fpr2	E330010I07Rik|Fpr-rs2	formyl peptide receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27565543-3	chr2	27565445	27565645	+	895.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50398.0	NM_080848	140858.0	Mm.28265	NM_080848	ENSMUSG00000026917	Wdr5	2410008O07Rik|AA408785|AA960360|Big|Big-3	WD repeat domain 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-83653698-6	chr8	83653750	83653950	+	834.527771	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018771, intron 1 of 6)	intron (NM_018771, intron 1 of 6)	1172.0	NM_018771	67903.0	Mm.20945	NM_018771	ENSMUSG00000019433	Gipc1	GIPC|Glut1CIP|Rgs19ip1|Semcap1|TIP-2|TaxIP2	GIPC PDZ domain containing family, member 1	protein-coding	0.99224762061909	1.1182486463841	1.64537597904356	0.702081844106405	0.688790377092044	1.12719429996492	1.08698311426887	1.41454770513477	-0.260011708175431	0.855691355264743	0.998431161219273
Merged-chr12-40431748-3	chr12	40431636	40431836	+	803.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172575, intron 1 of 12)	RMER6B|LTR|ERVK	14054.0	NM_172575	246196.0	Mm.26852	NM_172575	ENSMUSG00000055917	Zfp277	2410017E24Rik|NIRF4	zinc finger protein 277	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6874844-2	chr19	6874744	6874944	+	730.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16633.0	NM_001081291	78317.0	Mm.329596	NM_198008	ENSMUSG00000047810	Ccdc88b	2610041P08Rik|Ccdc88	coiled-coil domain containing 88B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-68973645-6	chr11	68973557	68973757	+	977.5277710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001285442, exon 1 of 5)	exon (NM_001285442, exon 1 of 5)	198.0	NM_021329	57785.0	Mm.143774	NM_021329	ENSMUSG00000032892	Rangrf	2400006H24Rik|Mog1|Rangnrf	RAN guanine nucleotide release factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-64055185-2	chr9	64055085	64055285	+	640.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5356.0	NR_040713	68697.0	Mm.491042	NR_040713	ENSMUSG00000097036	1110036E04Rik	-	RIKEN cDNA 1110036E04 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-51727935-1	chr3	51727835	51728035	+	672.333313	f0_balb.idr	intron (NM_001004176, intron 2 of 4)	L3b|LINE|CR1	66756.0	NM_001310482	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-26441240-4	chr14	26441136	26441336	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310445, intron 14 of 22)	PB1D10|SINE|Alu	83689.0	NR_038005	71106.0	Mm.158564	NR_038005	ENSMUSG00000021874	4933413J09Rik	GCSE	RIKEN cDNA 4933413J09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-11725681-2	chr17	11725590	11725790	+	793.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_016694, intron 7 of 11)	intron (NM_016694, intron 7 of 11)	157499.0	NR_045808	52027.0	Mm.442257	NR_045808		D17Ertd648e	-	DNA segment, Chr 17, ERATO Doi 648, expressed	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-109026824-4	chr3	109026694	109026894	+	903.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163567, intron 1 of 10)	intron (NM_001163567, intron 1 of 10)	813.0	NM_001163567	329739.0	Mm.69013	NM_001163567	ENSMUSG00000040339	Fam102b	1600010D10Rik|B430201A12Rik	family with sequence similarity 102, member B	protein-coding	3.96457214400612	4.09144613678199	3.55605785668256	3.45641048746715	3.75328961083734	3.6198335506236	3.41088483487384	1.99035908339083	-0.660403934625244	0.265268609029952	0.767868802425779
Merged-chr12-35039795-4	chr12	35039704	35039904	+	966.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7385.0	NM_001014973	217463.0	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	3.49592532587947	3.05941877397753	3.21331157356223	3.90998693959764	4.79131577000789	4.31868359464998	4.94137190309593	4.74137269697108	1.67576820876441	0.000147146769735176	0.00421937616309535
Merged-chr7-43544621-7	chr7	43544529	43544729	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4B|LINE|L1	-11458.0	NM_021293	12489.0	Mm.140157	NM_021293	ENSMUSG00000004609	Cd33	Siglec-3|gp67	CD33 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-58423365-4	chr4	58423263	58423463	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17735.0	NR_037278	100526502.0		NR_037278	ENSMUSG00000093293	Mir3095	mir-3095|mmu-mir-3095	microRNA 3095	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-73792548-2	chr16	73792448	73792648	+	587.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	549519.0	NR_030464	751561.0		NR_030464	ENSMUSG00000104758	Mir691	Mirn691|mir-691|mmu-mir-691	microRNA 691	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-70503312-4	chr9	70503199	70503399	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357494)	promoter-TSS (NM_001357494)	79.0	NM_001357494	93836.0	Mm.29783	NM_033604	ENSMUSG00000032217	Rnf111	ARK|Arkadia	ring finger 111	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129624781-2	chr2	129624681	129624881	+	606.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355158, intron 7 of 8)	intron (NM_001355158, intron 7 of 8)	29319.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88721193-4	chr3	88721096	88721296	+	848.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028056, intron 3 of 5)	RSINE1|SINE|B4	4342.0	NR_028056	19769.0	Mm.4009	NM_009069	ENSMUSG00000028057	Rit1	RIBB|ROC1|Rit	Ras-like without CAAX 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-113047537-4	chr6	113047376	113047576	+	950.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001355266, exon 2 of 10)	exon (NM_001355266, exon 2 of 10)	1174.0	NM_008188	14911.0	Mm.781	NM_008188	ENSMUSG00000030264	Thumpd3	AW556087|Gt(ROSA)26asSor|Gtrosa26as	THUMP domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-98382977-4	chr7	98382828	98383028	+	866.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21600.0	NM_001168539	244152.0	Mm.25317	NM_001024619	ENSMUSG00000049580	Tsku	9530051K01Rik|E2ig4|Lrrc54|Tsk	tsukushi, small leucine rich proteoglycan	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-49454792-4	chr7	49454668	49454868	+	963.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175272, intron 7 of 37)	intron (NM_175272, intron 7 of 37)	182067.0	NM_001005232	13172.0	Mm.307176	NM_001005232	ENSMUSG00000030507	Dbx1	AI426026|Dbx	developing brain homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-125118152-4	chr4	125118055	125118255	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_153159)	TTS (NM_153159)	9726.0	NM_153159	230738.0	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-134166645-2	chr5	134166545	134166745	+	612.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_033572, intron 5 of 10)	intron (NM_033572, intron 5 of 10)	10122.0	NM_033572	94254.0	Mm.29508	NM_033572	ENSMUSG00000061979	Rcc1l	5730496C04Rik|AU019812|Wbscr16	reculator of chromosome condensation 1 like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-22519919-3	chr5	22519816	22520016	+	729.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011959, intron 11 of 13)	intron (NM_011959, intron 11 of 13)	9114.0	NR_004442	100042049.0	Mm.21724	NR_004442		Gm15421	-	ribosomal protein L22 like 1 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-5365554-3	chr5	5365425	5365625	+	805.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011074, intron 2 of 14)	intron (NM_011074, intron 2 of 14)	14726.0	NM_011074	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	-0.182534527491087	-1.00895016391444	-1.0218572941639	-1.02617529563146	-1.02981053641889	-1.006153134946	-1.01893540279166	-1.02572713344884	-3.09936526392938	0.343406696059999	1
Merged-chr5-31291175-4	chr5	31291085	31291285	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026298)	promoter-TSS (NM_026298)	-71.0	NM_026298	67661.0	Mm.293023	NM_026298	ENSMUSG00000038564	Ift172	4930553F24Rik|Slb|avc1|wim	intraflagellar transport 172	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-9127751-1	chr15	9127651	9127851	+	1000.0	f0_balb.idr	intron (NM_013787, intron 3 of 9)	intron (NM_013787, intron 3 of 9)	12703.0	NM_013787	27401.0	Mm.35584	NM_013787	ENSMUSG00000054115	Skp2	4930500A04Rik|FBXL1|FWD1|p45	S-phase kinase-associated protein 2 (p45)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-59534216-2	chr11	59534116	59534316	+	977.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7353.0	NM_001359638	216799.0	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-60736774-4	chr14	60736677	60736877	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310594, intron 1 of 9)	intron (NM_001310594, intron 1 of 9)	3873.0	NM_001310594	219140.0	Mm.149776	NM_001033272	ENSMUSG00000021990	Spata13	C79050|ESTM11|X83327|mFLJ00298	spermatogenesis associated 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-113636380-3	chr8	113636286	113636486	+	911.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001048143, intron 2 of 5)	intron (NM_001048143, intron 2 of 5)	587.0	NM_173015	270096.0	Mm.74689	NM_173015	ENSMUSG00000078908	Mon1b	5031407H10|5033413H12Rik	MON1 homolog B, secretory traffciking associated	protein-coding	1.64508696115349	1.28628760215754	1.36083408153671	0.723494472582119	1.25088058304423	0.746893927989689	0.735183920645884	1.20506489148279	-1.23050922045814	0.406268373682352	0.891086832580755
Merged-chr2-165858230-3	chr2	165858129	165858329	+	954.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252585)	promoter-TSS (NM_001252585)	-56.0	NM_001252585	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-79430470-4	chr14	79430369	79430569	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001024135, exon 1 of 1)	3' UTR (NM_001024135, exon 1 of 1)	3958.0	NM_001024135	211255.0	Mm.284526	NM_001024135	ENSMUSG00000043881	Kbtbd7	1110008P08Rik|AU045792|Gm295	kelch repeat and BTB (POZ) domain containing 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-39389531-2	chr10	39389431	39389631	+	586.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001122893, intron 1 of 13)	intron (NM_001122893, intron 1 of 13)	19732.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46628868-4	chr8	46628762	46628962	+	876.2291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001284409, intron 1 of 6)	intron (NM_001284409, intron 1 of 6)	11571.0	NM_009810	12367.0	Mm.34405	NM_009810	ENSMUSG00000031628	Casp3	A830040C14Rik|AC-3|CASP-3|CC3|CPP-32|CPP32|Caspase-3|Lice|SCA-1|Yama|mldy	caspase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-8667670-4	chr12	8667589	8667789	+	869.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6445.0	NM_001160221	80913.0	Mm.341243	NM_030723	ENSMUSG00000020594	Pum2	5730503J23Rik|Pumm2	pumilio RNA-binding family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-22225286-3	chr9	22225184	22225384	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172763)	promoter-TSS (NM_172763)	-419.0	NM_172763	235047.0	Mm.290849	NM_172763	ENSMUSG00000057982	Zfp809	BB114266|C330026E23	zinc finger protein 809	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81698754-2	chr15	81698654	81698854	+	658.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-1467.0	NM_001164320	214685.0	Mm.393287	NM_001164320	ENSMUSG00000063765	Chadl	AY100452|D930017K21Rik	chondroadherin-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-91243386-2	chr10	91243286	91243486	+	583.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22767.0	NR_151510	102633753.0	Mm.416936	NR_151510		4930534H03Rik	-	RIKEN cDNA 4930534H03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-62459113-3	chr17	62459037	62459237	+	698.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	422180.0	NM_207654	13640.0	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28208206-3	chr17	28208116	28208316	+	851.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027185, intron 1 of 10)	intron (NM_027185, intron 1 of 10)	438.0	NM_027185	23853.0	Mm.204731	NM_027185	ENSMUSG00000002257	Def6	2410003F05Rik|6430538D02Rik|AV094905|Ibp|Slat|Slat2|Slat6	differentially expressed in FDCP 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-105677220-2	chr5	105677125	105677325	+	781.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-22744.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	1.2633723969056	0.696942829388137	0.680943188170277	1.46660114765322	1.57566155526994	2.00491628510186	0.684508984718513	0.670525460442314	1.04230753423673	0.500425735539601	0.938059363548374
Merged-chr12-102697738-2	chr12	102697638	102697838	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172584, intron 1 of 9)	intron (NM_172584, intron 1 of 9)	7131.0	NM_172584	217837.0	Mm.482192	NM_172584	ENSMUSG00000057963	Itpk1	BC031182	inositol 1,3,4-triphosphate 5/6 kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-98085911-2	chr7	98085811	98086011	+	786.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008663, intron 15 of 48)	intron (NM_008663, intron 15 of 48)	23337.0	NM_001256082	17921.0	Mm.1403	NM_008663	ENSMUSG00000030761	Myo7a	Hdb|Myo7|USH1B|nmf371|polka|sh-1|sh1	myosin VIIA	protein-coding	0.11752480309867	0.140982426181202	1.13725608257065	0.127451425202423	0.653928443543085	0.142688584369113	0.135056253339772	0.605683032260174	-0.417796646716643	0.841505149834728	1
Merged-chr18-11052303-2	chr18	11052203	11052403	+	873.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010258)	promoter-TSS (NM_010258)	-207.0	NM_010258	14465.0	Mm.329287	NM_010258	ENSMUSG00000005836	Gata6	AA410133|GATA-6	GATA binding protein 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-58445671-2	chr10	58445571	58445771	+	833.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1181.0	NM_011240	19386.0	Mm.431695	NM_011240	ENSMUSG00000003226	Ranbp2	A430087B05Rik|AI256741|NUP358	RAN binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-108259571-2	chr3	108259471	108259671	+	886.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011967, intron 1 of 8)	intron (NM_011967, intron 1 of 8)	2645.0	NM_011967	26442.0	Mm.208883	NM_011967	ENSMUSG00000068749	Psma5	ZETA	proteasome (prosome, macropain) subunit, alpha type 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-105892045-4	chr3	105891940	105892140	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027025, intron 1 of 6)	intron (NM_027025, intron 1 of 6)	-12381.0	NM_009631	11542.0	Mm.235024	NM_009631	ENSMUSG00000000562	Adora3	A3AR|A3R|AA3R|ARA3|Gpcr2	adenosine A3 receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102462379-2	chr12	102462326	102462526	+	731.125	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR49|LTR|ERVK	-6708.0	NM_001199004	27277.0	Mm.273370	NM_013747	ENSMUSG00000021192	Golga5	Ret-II	golgi autoantigen, golgin subfamily a, 5	protein-coding	-1.58994551673671	-1.55912852307891	-1.56844783632235	-1.57610299769523	-1.18549093183599	-1.55710898902261	-1.56633814807757	-1.57473272746952	1.78703309985663	0.610309988231842	1
Merged-chr17-83814239-2	chr17	83814139	83814339	+	619.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_054082, intron 16 of 16)	MTE2a|LTR|ERVL-MaLR	32551.0	NM_025325	107766.0	Mm.30100	NM_025325	ENSMUSG00000000673	Haao	0610007K21Rik|0610012J07Rik|3-HAO|3-HAOxase|3HAO	3-hydroxyanthranilate 3,4-dioxygenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-85079881-1	chr1	85079781	85079981	+	676.0	f1_balb.idr	Intergenic	Intergenic	29972.0	NM_213615	381287.0	Mm.487565	NM_213615	ENSMUSG00000089844	A530032D15Rik	Gm1888	RIKEN cDNA A530032D15Rik gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-48872426-4	chr11	48872328	48872528	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1008.0	NM_008326	15944.0	Mm.29938	NM_008326	ENSMUSG00000046879	Irgm1	Ifggd3|Ifi1|Iigp3|Iipg3|Irgm	immunity-related GTPase family M member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-107100265-2	chr13	107100165	107100365	+	723.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	77695.0	NR_015471	100040322.0	Mm.133867	NR_015471	ENSMUSG00000071181	3830408C21Rik	-	RIKEN cDNA 3830408C21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-71489952-2	chr4	71489852	71490052	+	613.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	710941.0	NM_011599	21885.0	Mm.278444	NM_011599	ENSMUSG00000008305	Tle1	C230057C06Rik|Estm14|Grg-1|Grg1|Tle4l	transducin-like enhancer of split 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-113426115-3	chr13	113426021	113426221	+	917.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	76723.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70599301-2	chr8	70599191	70599391	+	680.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133772, intron 9 of 16)	MER5B|DNA|hAT-Charlie	4810.0	NM_023627	71780.0	Mm.29357	NM_023627	ENSMUSG00000019139	Isyna1	1300017C10Rik|AU018670	myo-inositol 1-phosphate synthase A1	protein-coding	1.11574887263484	0.830461606375983	0.815183854018408	1.65952384123643	1.48091981598619	1.8032394545775	0.818581655696152	1.66958480466763	1.21168521497414	0.386932314734212	0.876517644221684
Merged-chr8-117121465-4	chr8	117121375	117121575	+	931.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021486, intron 7 of 10)	intron (NM_021486, intron 7 of 10)	25610.0	NM_001163028	63857.0	Mm.174133	NM_021486	ENSMUSG00000031845	Bco1	Bcdo|Bcdo1|Bcmo1|CMO1|Cmoi|beta-CD|betaCMOOX	beta-carotene oxygenase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-55399690-2	chr12	55399590	55399790	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011968, intron 1 of 6)	intron (NM_011968, intron 1 of 6)	865.0	NM_011968	26443.0	Mm.30210	NM_011968	ENSMUSG00000021024	Psma6	IOTA	proteasome (prosome, macropain) subunit, alpha type 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-119898339-2	chr3	119898239	119898439	+	659.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-114951.0	NM_019550	56195.0	Mm.29966	NM_019550	ENSMUSG00000028134	Ptbp2	Ptb2|brPTB|nPTB	polypyrimidine tract binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-135534209-2	chr1	135534109	135534309	+	849.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173437, intron 2 of 28)	intron (NM_173437, intron 2 of 28)	51146.0	NM_173437	215690.0	Mm.34977	NM_173437	ENSMUSG00000009418	Nav1	9530089B19|9930003A20Rik|C230080M11Rik|Gm38399|Pomfil3|Unc53h1|mKIAA1151|steerin-1	neuron navigator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-75011189-4	chr14	75011084	75011284	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030568, intron 3 of 3)	intron (NR_030568, intron 3 of 3)	-4843.0	NM_198642	271221.0	Mm.320280	NM_198642	ENSMUSG00000034959	Rubcnl	5031414D18Rik|Gm744|Gm911|Kiaa0226l	RUN and cysteine rich domain containing beclin 1 interacting protein like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141464009-3	chr7	141463915	141464115	+	996.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_152220)	promoter-TSS (NR_152220)	-111.0	NR_152220	100126795.0	Mm.386851	NR_152219	ENSMUSG00000073787	Gm10575	-	predicted gene 10575	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-150751953-2	chr2	150751853	150752053	+	550.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355068, intron 1 of 13)	intron (NM_001355068, intron 1 of 13)	2872.0	NM_172117	12497.0	Mm.275524	NM_172117	ENSMUSG00000033068	Entpd6	2700026H11Rik|Cd39l2|NTPDase-6	ectonucleoside triphosphate diphosphohydrolase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-51732308-2	chr13	51732208	51732408	+	560.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013660, intron 2 of 15)	intron (NM_013660, intron 2 of 15)	61439.0	NM_001281880	20354.0	Mm.33903	NM_013660	ENSMUSG00000021451	Sema4d	CD100|Semacl2|Semaj|Semcl2|coll-4	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-16131749-4	chr2	16131641	16131841	+	986.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310455, intron 33 of 38)	L2|LINE|L2	-224563.0	NM_026162	67448.0	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-49411851-4	chr2	49411750	49411950	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39636.0	NM_172663	227867.0	Mm.29167	NM_172663	ENSMUSG00000069495	Epc2	5830499L14|D2Ertd694e	enhancer of polycomb homolog 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-83743086-4	chr8	83742987	83743187	+	796.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	-1776.0	NM_001163031	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	3.65882894494706	1.54005512503999	2.87093956355972	3.27434025969398	3.13398444489582	2.88505402849191	1.78451804120268	2.45116453513082	-0.688858274283122	0.407367156211063	0.891845785649541
Merged-chr6-113078585-4	chr6	113078464	113078664	+	999.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028385, intron 1 of 21)	intron (NM_028385, intron 1 of 21)	925.0	NM_028385	72895.0	Mm.367159	NM_028385	ENSMUSG00000034269	Setd5	2900045N06Rik|C330007C20|C85544|mKIAA1757	SET domain containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-4536126-4	chr11	4536027	4536227	+	833.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028860, intron 1 of 17)	L1MB8|LINE|L1	58688.0	NM_028860	74302.0	Mm.425669	NM_028860	ENSMUSG00000034354	Mtmr3	1700092A20Rik|AI255150|AW557713|FYVE-DSP1|ZFYVE10|mKIAA0371	myotubularin related protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-55013063-4	chr11	55012940	55013140	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_138556, intron 3 of 24)	intron (NR_138556, intron 3 of 24)	20431.0	NR_138556	11749.0	Mm.265347	NM_013472	ENSMUSG00000018340	Anxa6	AW107198|Anx6|AnxVI|Cabm|Camb	annexin A6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4902562-4	chr16	4902472	4902672	+	818.174988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357062, intron 1 of 17)	intron (NM_001357062, intron 1 of 17)	16472.0	NM_001357061	17237.0	Mm.291326	NM_029657	ENSMUSG00000022517	Mgrn1	2610042J20Rik|mKIAA0544|md|nc	mahogunin, ring finger 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-86397723-4	chr6	86397593	86397793	+	999.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025823)	promoter-TSS (NM_025823)	-543.0	NM_025823	66881.0	Mm.30849	NM_025823	ENSMUSG00000029998	Pcyox1	1200015P13Rik|AI115532|AI448340|PCL1|Pcly	prenylcysteine oxidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-62554551-2	chr11	62554451	62554651	+	754.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	2820.0	NM_001313984	22187.0	Mm.371592	NM_011664	ENSMUSG00000019505	Ubb	AL033289|Rps27a|Uba52|Ubb2|Ubc	ubiquitin B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-45805134-4	chr19	45805006	45805206	+	865.966675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145703, intron 1 of 9)	intron (NM_145703, intron 1 of 9)	7185.0	NM_001276358	80906.0	Mm.213204	NM_030716	ENSMUSG00000025221	Kcnip2	KChIP2	Kv channel-interacting protein 2	protein-coding	5.70896114902358	4.390719727495	4.77759078933134	5.35141055097421	4.70132462990625	4.82164947360753	3.81315100665558	5.14943216148113	-0.54701536726833	0.173606819797729	0.640902961210202
Merged-chr13-92483532-4	chr13	92483429	92483629	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163627, intron 1 of 5)	B2_Mm2|SINE|B2	502.0	NM_001163627	73942.0	Mm.85935	NM_001163627	ENSMUSG00000034334	Fam151b	4930405M20Rik	family with sequence similarity 151, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-108748835-2	chr8	108748735	108748935	+	552.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007496, intron 1 of 9)	intron (NM_007496, intron 1 of 9)	34191.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-39613281-2	chr2	39613181	39613381	+	556.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-386932.0	NM_024209	67857.0	Mm.389242	NM_024209	ENSMUSG00000026753	Ppp6c	2310003C10Rik|Pp6C	protein phosphatase 6, catalytic subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72103554-3	chr6	72103476	72103676	+	814.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011375, intron 1 of 6)	intron (NM_011375, intron 1 of 6)	5968.0	NM_011375	20454.0	Mm.38248	NM_011375	ENSMUSG00000056091	St3gal5	3S-T|Siat9|[a]2	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-73530057-2	chr7	73529957	73530157	+	642.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081345, intron 2 of 38)	intron (NM_001081345, intron 2 of 38)	11689.0	NM_001081345	244059.0	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-144963572-4	chr5	144963490	144963690	+	930.537476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038627, intron 1 of 17)	intron (NM_001038627, intron 1 of 17)	2240.0	NM_001038627	75788.0	Mm.27735	NM_029438	ENSMUSG00000038780	Smurf1	4930431E10Rik|mKIAA1625	SMAD specific E3 ubiquitin protein ligase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-60282701-2	chr2	60282601	60282801	+	811.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_025422, intron 1 of 4)	intron (NM_025422, intron 1 of 4)	1783.0	NM_025422	66205.0	Mm.227281	NM_025422	ENSMUSG00000060703	Cd302	1110055L24Rik|AI159627	CD302 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5690253-2	chr17	5690153	5690353	+	559.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 3 of 8)	B3|SINE|B2	-108404.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-26801322-2	chr10	26801222	26801422	+	914.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_176837, intron 1 of 14)	intron (NM_176837, intron 1 of 14)	28810.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-39455552-3	chr10	39455477	39455677	+	929.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122893, intron 3 of 13)	intron (NM_001122893, intron 3 of 13)	85778.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-77764958-2	chr15	77764858	77765058	+	610.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_022410, intron 35 of 40)	B1_Mus2|SINE|Alu	-7948.0	NM_001357895	239552.0	Mm.125650	NM_001081970	ENSMUSG00000056656	Apol8	9830006J20Rik|APOL-II|Apol2	apolipoprotein L 8	protein-coding	0.0513653182581873	0.0726977793181932	0.972368388346391	0.637910949127957	0.0527115879057175	0.465024692094744	0.0672962795585659	0.0613197574300438	-2.37037410748155	0.279196165209569	1
Merged-chr18-42259448-2	chr18	42259348	42259548	+	913.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_134137, intron 1 of 31)	intron (NM_134137, intron 1 of 31)	2623.0	NM_134137	107045.0	Mm.312170	NM_134137	ENSMUSG00000024493	Lars	2310045K21Rik|3110009L02Rik|AW536573|mKIAA1352	leucyl-tRNA synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95654794-6	chr3	95654715	95654915	+	877.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-3906.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-94537484-4	chr9	94537425	94537625	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001033145, exon 1 of 3)	exon (NM_001033145, exon 1 of 3)	556.0	NM_001033145	68861.0	Mm.258746	NM_001033145	ENSMUSG00000045414	1190002N15Rik	GoPro49|HASF	RIKEN cDNA 1190002N15 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-58742614-4	chr1	58742510	58742710	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355056, intron 7 of 8)	intron (NM_001355056, intron 7 of 8)	12058.0	NM_001293805	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-3288536-2	chr17	3288432	3288632	+	920.1666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-38041.0	NM_001122998	24001.0	Mm.137134	NM_011878	ENSMUSG00000023800	Tiam2	3000002F19Rik|STEF|mKIAA2016	T cell lymphoma invasion and metastasis 2	protein-coding	2.92952108941408	2.78314855380395	2.56576036815846	2.35846245884424	3.15596202603707	3.29704128887967	2.2847407352333	2.93246158328567	0.558843678271871	0.424410833285315	0.901293602726532
Merged-chr5-92341884-2	chr5	92341782	92341982	+	774.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310664, intron 2 of 10)	L1_Mus2|LINE|L1	7007.0	NM_021274	15945.0	Mm.877	NM_021274	ENSMUSG00000034855	Cxcl10	C7|CRG-2|INP10|IP-10|IP10|Ifi10|Scyb10|gIP-10|mob-1	chemokine (C-X-C motif) ligand 10	protein-coding	0.987540970988105	1.27549285293242	0.48030995241539	0.472795864522126	0.462081449139189	1.28886139552052	0.482448020849389	0.951974281544028	-0.0268211434326147	0.987772800961411	0.998431161219273
Merged-chr11-77967313-2	chr11	77967213	77967413	+	810.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_021286, intron 4 of 16)	intron (NM_021286, intron 4 of 16)	-15503.0	NM_174852	268448.0	Mm.274329	NM_174852	ENSMUSG00000037791	Phf12	2410142K10Rik|F630045O13|PF1|mKIAA1523	PHD finger protein 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-105798499-4	chr5	105798386	105798586	+	967.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122768, intron 2 of 2)	L2c|LINE|L2	-78082.0	NR_030777	54367.0	Mm.248876	NM_018759	ENSMUSG00000029290	Zfp326	5730470H14Rik|ZAN75|Znf326	zinc finger protein 326	protein-coding	0.829087655263672	0.884407129979199	1.69534632921943	1.74488073305185	0.832684796336561	1.33609176073066	2.00937991771106	1.65024478729662	0.534267683122979	0.698800131712136	0.998284579433352
Merged-chr1-44118872-4	chr1	44118726	44118926	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023645)	promoter-TSS (NM_023645)	-53.0	NM_023645	72050.0	Mm.281714	NM_023645	ENSMUSG00000026047	Kdelc1	1810049A15Rik|5730416C13Rik|EP58|Kdel1	KDEL (Lys-Asp-Glu-Leu) containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-64515723-5	chr18	64515553	64515753	+	941.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142950, intron 1 of 14)	intron (NM_001142950, intron 1 of 14)	904.0	NM_027350	70223.0	Mm.29192	NM_027350	ENSMUSG00000024587	Nars	3010001M15Rik|AA960128|ASNRS|C78150	asparaginyl-tRNA synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-30918877-2	chr5	30918777	30918977	+	740.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133918, intron 4 of 7)	intron (NM_133918, intron 4 of 7)	-2682.0	NM_001310525	16548.0	Mm.22451	NM_008439	ENSMUSG00000029162	Khk	-	ketohexokinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-78012585-2	chr10	78012485	78012685	+	576.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2778.0	NM_001358793	18641.0	Mm.269649	NM_008826	ENSMUSG00000020277	Pfkl	AA407869|ATP-PFK|PFK-B|PFK-L	phosphofructokinase, liver, B-type	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19940023-4	chr7	19939905	19940105	+	842.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027308, intron 3 of 4)	RLTR26B_MM|LTR|ERVK	10738.0	NM_027308	70080.0	Mm.98583	NM_027308	ENSMUSG00000040498	Igsf23	2210010C17Rik	immunoglobulin superfamily, member 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-12795631-4	chr19	12795542	12795742	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361971)	promoter-TSS (NM_001361971)	481.0	NR_024093	664779.0	Mm.290924	NM_001039718	ENSMUSG00000024695	Gm44505	Zfp91-Cntf|Zfp91Cntf	predicted readthrough transcript (NMD candidate), 44505	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-8992993-4	chr19	8992905	8993105	+	900.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039959, intron 1 of 5)	intron (NM_001039959, intron 1 of 5)	3721.0	NM_001286518	66395.0	Mm.203866	NM_009643	ENSMUSG00000069833	Ahnak	DY6	AHNAK nucleoprotein (desmoyokin)	protein-coding	2.60790237183784	3.02683484325329	3.0217392455612	3.17785767929641	2.97412669055889	2.69528483880076	2.12058782253909	3.03939954583788	-0.393041515105666	0.567739641743507	0.962562732139494
Merged-chr7-49272586-4	chr7	49272455	49272655	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175272, intron 1 of 37)	B1F|SINE|Alu	26366.0	NM_175272	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-87064195-3	chr17	87064094	87064294	+	819.638855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38633.0	NM_019936	56724.0	Mm.109329	NM_019936	ENSMUSG00000024146	Cript	1200020A08Rik|AA589469	cysteine-rich PDZ-binding protein	protein-coding	0.310485028560016	-0.128685238633207	-0.133199410113381	-0.136673060077671	0.320279267078042	0.354365447424865	-0.132204933864811	-0.136066792889476	1.07391996457881	0.650647110061441	1
Merged-chr10-57747253-4	chr10	57747129	57747329	+	839.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-37694.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-73314531-2	chr2	73314431	73314631	+	747.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355711, intron 1 of 3)	intron (NM_001355711, intron 1 of 3)	1879.0	NM_001355711	74616.0	Mm.247457	NM_029022	ENSMUSG00000008226	Scrn3	4833415E20Rik|AI427019|AV002033|Ses3	secernin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-66388883-4	chr8	66388778	66388978	+	916.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175188, intron 5 of 7)	intron (NM_175188, intron 5 of 7)	2577.0	NM_001166375	72925.0	Mm.380457	NM_175188	ENSMUSG00000036469	March1	2900024D24Rik|BB085186	membrane-associated ring finger (C3HC4) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-50837803-1	chr2	50837703	50837903	+	985.0	f0_balb.idr	Intergenic	Intergenic	-71881.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-101082479-1	chr12	101082379	101082579	+	674.0	f0_balb.idr	promoter-TSS (NR_038047)	promoter-TSS (NR_038047)	28.0	NR_038049	319760.0	Mm.440198	NM_176997	ENSMUSG00000097121	D130020L05Rik	9430007L23Rik	RIKEN cDNA D130020L05 gene	ncRNA	0.630948266234639	0.0716199894413161	0.847929353801785	0.0607394167698101	0.449968635239713	0.0730003520876452	0.0668399586570588	0.0615693577100394	-1.99344663213551	0.364919626284811	1
Merged-chr7-5065770-2	chr7	5065670	5065870	+	779.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205231, intron 1 of 11)	intron (NM_001205231, intron 1 of 11)	3627.0	NM_001205231	22185.0	Mm.360389	NM_133671	ENSMUSG00000030435	U2af2	65kDa	U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-17765922-2	chr12	17765822	17766022	+	861.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016677, intron 1 of 3)	L1MA4|LINE|L1	75113.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117288124-4	chr8	117288020	117288220	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	31101.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-60936664-2	chr13	60936564	60936764	+	815.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007796)	promoter-TSS (NM_007796)	-39.0	NM_007796	13024.0	Mm.482089	NM_007796	ENSMUSG00000044258	Ctla2a	Ctla-2a	cytotoxic T lymphocyte-associated protein 2 alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-117895814-2	chr5	117895714	117895914	+	855.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_008712, exon 4 of 28)	exon (NM_008712, exon 4 of 28)	28975.0	NM_008712	18125.0	Mm.44249	NM_008712	ENSMUSG00000029361	Nos1	2310005C01Rik|N-NOS|NC-NOS|NO|NOS|NOS-I|Nos-1|bNOS|nNOS	nitric oxide synthase 1, neuronal	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-37145300-2	chr9	37145189	37145389	+	769.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001029838, intron 1 of 12)	CpG	2033.0	NM_148950	208076.0	Mm.260335	NM_148950	ENSMUSG00000035934	Pknox2	D230005H23Rik|Prep2	Pbx/knotted 1 homeobox 2	protein-coding	2.03194054854645	1.37377832187465	1.07622233130048	1.05443067126352	1.72253244736944	1.79082013733253	2.58712836396855	2.57168180475133	2.10307125200136	0.0611220595748404	0.366182991400933
Merged-chr8-70773086-2	chr8	70772986	70773186	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008841, intron 2 of 15)	intron (NM_008841, intron 2 of 15)	3626.0	NM_008841	18709.0	Mm.12945	NM_008841	ENSMUSG00000031834	Pik3r2	p85beta	phosphoinositide-3-kinase regulatory subunit 2	protein-coding	-0.653592612374646	-0.642743115685955	-0.466562106566617	-0.649042894938432	-0.652916089044018	-0.641940974097944	0.0420950045672597	-0.479528112258003	2.41230636379642	0.365311074955948	1
Merged-chr10-95442493-3	chr10	95442385	95442585	+	753.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25110.0	NR_045338	70523.0	Mm.158398	NR_045338	ENSMUSG00000097766	5730420D15Rik	-	RIKEN cDNA 5730420D15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-40832509-3	chr19	40832414	40832614	+	993.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172839, intron 2 of 5)	MIR|SINE|MIR	1235.0	NM_172839	240665.0	Mm.309	NM_172839	ENSMUSG00000025010	Ccnj	D430039C20Rik	cyclin J	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43259832-3	chr4	43259689	43259889	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081413, intron 37 of 39)	intron (NM_001081413, intron 37 of 39)	-7370.0	NM_177195	320571.0	Mm.74465	NM_177195	ENSMUSG00000028457	Atp8b5	4930417M19Rik|Feta	ATPase, class I, type 8B, member 5	protein-coding	0.893155878334655	1.17219494062408	0.49582507299322	0.488356945225528	1.19479780722063	1.29940799705846	0.497950595946243	0.48966534920089	0.636725035948984	0.714369690632249	0.998431161219273
Merged-chr6-122939793-4	chr6	122939699	122939899	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12716.0	NM_001204241	73149.0	Mm.25684	NM_153197	ENSMUSG00000043832	Clec4a3	3110037K17Rik|Dcir3	C-type lectin domain family 4, member a3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122885629-2	chr5	122885529	122885729	+	834.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001003953, intron 13 of 22)	B1_Mur3|SINE|Alu	14721.0	NM_013910	30841.0	Mm.86406	NM_013910	ENSMUSG00000029475	Kdm2b	Cxxc2|Fbl10|Fbxl10|Jhdm1b|PCCX2	lysine (K)-specific demethylase 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-75507341-2	chr10	75507241	75507441	+	594.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001347201, exon 6 of 6)	3' UTR (NM_001347201, exon 6 of 6)	10040.0	NM_175133	68778.0	Mm.29382	NM_175133	ENSMUSG00000033416	Gucd1	1110038D17Rik	guanylyl cyclase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-67183249-1	chr18	67183149	67183349	+	626.0	f0_balb.idr	intron (NM_177137, intron 4 of 11)	intron (NM_177137, intron 4 of 11)	-22110.0	NM_024190	67064.0	Mm.73777	NM_024190	ENSMUSG00000109901	Chmp1b	2810405I11Rik|Chmp1b1	charged multivesicular body protein 1B	protein-coding	2.17621312273853	1.94407862552044	1.65389650233117	1.8230960877081	2.51750520488875	3.45510000058791	2.83266983995065	2.82964093682204	2.24796523490732	0.00600297118230981	0.0764041530184086
Merged-chr17-35163592-2	chr17	35163492	35163692	+	777.5625	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199044, intron 1 of 30)	intron (NM_001199044, intron 1 of 30)	1285.0	NM_001199044	53761.0	Mm.272462	NM_020027	ENSMUSG00000024393	Prrc2a	3110039B05Rik|Bat-2|Bat2|D17H6S51E|G2|Wbp12|mKIAA4178	proline-rich coiled-coil 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-110477996-2	chr9	110477896	110478096	+	676.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163569, intron 1 of 20)	intron (NM_001163569, intron 1 of 20)	1002.0	NM_001163569	16578.0	Mm.42170	NM_010628	ENSMUSG00000032489	Kif9	-	kinesin family member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-129352855-2	chr1	129352755	129352955	+	548.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172485, intron 1 of 27)	MLTR14|LTR|ERV1	79551.0	NM_172485	210417.0	Mm.380518	NM_172485	ENSMUSG00000042581	Thsd7b	1700074E13Rik|B930082A18|D130067I03Rik	thrombospondin, type I, domain containing 7B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-137179015-2	chr4	137178915	137179115	+	846.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13949.0	NR_040443	100503595.0	Mm.421314	NR_040443	ENSMUSG00000085833	Gm13003	-	predicted gene 13003	ncRNA	1.88490752547592	1.44247317618149	0.926565348355326	0.907031067329806	1.69729946949108	1.93825664761837	0.932033166196008	2.66296531219746	1.66640037198636	0.189939431182854	0.668558565029891
Merged-chr8-46472291-2	chr8	46472191	46472391	+	580.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007981, intron 1 of 20)	intron (NM_007981, intron 1 of 20)	1254.0	NM_007981	14081.0	Mm.210323	NM_007981	ENSMUSG00000018796	Acsl1	Acas|Acas1|Acs|FACS|Facl2|LACS 1|LACS1	acyl-CoA synthetase long-chain family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83867190-4	chr6	83867086	83867286	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-35445.0	NM_146169	232164.0	Mm.404420	NM_146169	ENSMUSG00000045896	Paip2b	-	poly(A) binding protein interacting protein 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30965063-2	chr2	30964963	30965163	+	622.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144884, intron 2 of 4)	B4|SINE|B4	2855.0	NM_144884	30931.0	Mm.154994	NM_144884	ENSMUSG00000026849	Tor1a	DQ2|Dyt1|torsinA	torsin family 1, member A (torsin A)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-60353107-4	chr11	60353005	60353205	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029044)	promoter-TSS (NM_029044)	-200.0	NM_001359810	216810.0	Mm.218875	NM_153080	ENSMUSG00000000538	Tom1l2	2900016I08Rik|A730055F12Rik|AU042072|Srebf1	target of myb1-like 2 (chicken)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-75220047-2	chr8	75219947	75220147	+	557.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029182, intron 2 of 2)	intron (NM_029182, intron 2 of 2)	6103.0	NM_029182	75141.0	Mm.179267	NM_029182	ENSMUSG00000034472	Rasd2	4930526B11Rik|AU045414|Rhes|TEM-2|TEM2	RASD family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120713811-4	chr11	120713696	120713896	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016665)	promoter-TSS (NM_016665)	12.0	NM_001347611	20892.0	Mm.259716	NM_016665	ENSMUSG00000025144	Cenpx	Stra13	centromere protein X	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-92705864-4	chr16	92705720	92705920	+	885.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111022, intron 2 of 6)	intron (NM_001111022, intron 2 of 6)	-8491.0	NM_009821	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52981706-3	chr13	52981615	52981815	+	918.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017373)	promoter-TSS (NM_017373)	-676.0	NM_017373	18030.0	Mm.136604	NM_017373	ENSMUSG00000056749	Nfil3	AV225605|E4BP4	nuclear factor, interleukin 3, regulated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-48771901-2	chr11	48771801	48772001	+	572.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-28459.0	NM_008143	14694.0	Mm.5305	NM_008143	ENSMUSG00000020372	Rack1	AL033335|GB-like|Gnb2-rs1|Gnb2l1|p205	receptor for activated C kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-67165716-2	chr6	67165616	67165816	+	577.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-101263.0	NM_001113566	66870.0	Mm.240490	NM_025814	ENSMUSG00000036371	Serbp1	1200009K13Rik|9330147J08Rik|AL022786|Pairbp1	serpine1 mRNA binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-27199434-2	chr7	27199334	27199534	+	603.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290513, intron 2 of 7)	RLTR11A2|LTR|ERVK	-3163.0	NM_001285825	53607.0	Mm.386890	NM_015782	ENSMUSG00000061479	Snrpa	C430021M15Rik|Rnu1a-1|Rnu1a1|U1-A|U1A	small nuclear ribonucleoprotein polypeptide A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4101700-2	chr19	4101600	4101800	+	772.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008851, intron 1 of 22)	intron (NM_008851, intron 1 of 22)	1078.0	NM_008851	18739.0	Mm.1860	NM_008851	ENSMUSG00000024851	Pitpnm1	DRES9|Mpt-1|Nir-2|PITPnm 1|Pitpnm|R75447|Rd9|RdgB|RdgB1	phosphatidylinositol transfer protein, membrane-associated 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-8974164-4	chr10	8974077	8974277	+	839.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-88107.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-142101763-2	chr4	142101664	142101864	+	724.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_144531)	TTS (NM_144531)	-17460.0	NM_145402	214359.0	Mm.27587	NM_145402	ENSMUSG00000040616	Tmem51	BC003277	transmembrane protein 51	protein-coding	-2.18292257394068	-2.15545247547656	-2.03304972317742	-2.17058342868585	-2.18099422382073	-2.1536522739386	-2.16187909550322	-2.16936197735154	-0.683654500252594	0.846597994014493	1
Merged-chr6-52724922-2	chr6	52724823	52725023	+	742.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355595, intron 2 of 16)	intron (NM_001355595, intron 2 of 16)	10758.0	NM_001355596	52440.0	Mm.389757	NM_025816	ENSMUSG00000004535	Tax1bp1	1200003J11Rik|1700069J21Rik|AA930106|D6Ertd404e|D6Ertd772e|T6bp|TXBP151	Tax1 (human T cell leukemia virus type I) binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-36187761-4	chr17	36187665	36187865	+	932.883301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008208, intron 3 of 5)	intron (NM_008208, intron 3 of 5)	2386.0	NM_008208	15043.0	Mm.426002	NM_008208	ENSMUSG00000054128	H2-T3	H-2T3|H2-Tw3|MumuTL|TL	histocompatibility 2, T region locus 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-8164929-4	chr17	8164846	8165046	+	891.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001197046)	promoter-TSS (NM_001197046)	-572.0	NM_001197046	75296.0	Mm.227250	NM_201230	ENSMUSG00000069135	Fgfr1op	4930553O10Rik|FOP	Fgfr1 oncogene partner	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-19068505-4	chr10	19068395	19068595	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53085.0	NM_009397	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	3.80950281903352	5.08762104095887	4.20573841313837	4.26805152873862	5.05999458525281	5.50952908658606	4.81179748919217	4.10870611908969	0.668602760755756	0.116500526669181	0.534780130868259
Merged-chr18-57878678-5	chr18	57878587	57878787	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009194)	promoter-TSS (NM_009194)	9.0	NM_009194	20496.0	Mm.399997	NM_009194	ENSMUSG00000024597	Slc12a2	9330166H04Rik|Nkcc1|mBSC2|sy-ns	solute carrier family 12, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-121252820-3	chr5	121252730	121252930	+	653.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181421, intron 1 of 75)	intron (NM_181421, intron 1 of 75)	32611.0	NM_181421	269700.0	Mm.184589	NM_181421	ENSMUSG00000042744	Hectd4	A130010L24|AU042671|BC019639|EG545802|Gm15800|mKIAA0614	HECT domain E3 ubiquitin protein ligase 4	protein-coding	2.38634444205025	2.40503880827844	2.32737426539832	2.88153521478669	2.40547693667168	2.90190128720203	2.34481955657054	2.8957841180261	0.292678242241621	0.695593285930576	0.997923870727665
Merged-chr17-65780346-2	chr17	65780246	65780446	+	686.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3009.0	NR_152099	70351.0	Mm.48686	NM_146081	ENSMUSG00000061950	Ppp4r1	3110001J10Rik|Pp4r1	protein phosphatase 4, regulatory subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166702333-2	chr2	166702233	166702433	+	631.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	L2|LINE|L2	11499.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-52920881-4	chr6	52920793	52920993	+	858.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173406, intron 1 of 4)	intron (NM_173406, intron 1 of 4)	-11273.0	NM_001168277	231986.0	Mm.386865	NM_173406	ENSMUSG00000063568	Jazf1	AI591476|C820002C15|Jaz1|Tip27	JAZF zinc finger 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129292992-2	chr4	129292892	129293092	+	768.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023485, intron 1 of 4)	ORR1B1|LTR|ERVL-MaLR	5371.0	NM_023485	68828.0	Mm.132243	NM_023485	ENSMUSG00000001333	Sync	1110057H03Rik|SNIP4	syncoilin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-155653275-3	chr4	155653163	155653363	+	881.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001320235)	promoter-TSS (NM_001320235)	27.0	NM_001320235	26561.0	Mm.29373	NM_011985	ENSMUSG00000029061	Mmp23	CA-MMP	matrix metallopeptidase 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-77519221-3	chr11	77519123	77519323	+	679.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_026185, exon 2 of 2)	3' UTR (NM_026185, exon 2 of 2)	4106.0	NM_026185	67477.0	Mm.432526	NM_026185	ENSMUSG00000000686	Abhd15	1300007F04Rik	abhydrolase domain containing 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117850603-2	chr11	117850503	117850703	+	809.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001012273, intron 2 of 2)	RMER10B|LTR|ERVL	1366.0	NM_009689	11799.0	Mm.8552	NM_009689	ENSMUSG00000017716	Birc5	AAC-11|Api4|TIAP|survivin40	baculoviral IAP repeat-containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128345483-2	chr10	128345383	128345583	+	598.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026444, intron 1 of 10)	intron (NM_026444, intron 1 of 10)	7756.0	NM_026444	12974.0	Mm.58836	NM_026444	ENSMUSG00000005683	Cs	2610511A05Rik|9030605P22Rik|Ahl4|BB234005|Cis	citrate synthase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70682951-4	chr8	70682859	70683059	+	851.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9728.0	NM_015816	50783.0	Mm.248188	NM_015816	ENSMUSG00000031848	Lsm4	-	LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-145256232-1	chr6	145256132	145256332	+	688.0	f1_c57bl6.idr	Intergenic	Intergenic	5680.0	NR_045598	100039495.0	Mm.121014	NR_045598	ENSMUSG00000086013	Gm15706	-	predicted gene 15706	ncRNA	1.77037458376741	0.948133156446292	0.924936178982333	2.56368527911502	1.56297579296449	1.4418182839552	0.930128693216025	2.08725867156263	-0.501507474418602	0.699939839790036	0.998431161219273
Merged-chr10-84163928-4	chr10	84163820	84164020	+	969.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63223.0	NR_152790	102637349.0	Mm.402869	NR_152790	ENSMUSG00000111049	Gm34184	-	predicted gene, 34184	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-129533428-6	chr6	129533323	129533523	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045270)	promoter-TSS (NR_045270)	-139.0	NR_045270	100504641.0	Mm.398286	NR_045270	ENSMUSG00000097675	1700101I11Rik	-	RIKEN cDNA 1700101I11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-75355845-2	chr18	75355745	75355945	+	554.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11243.0	NR_155535	102636262.0	Mm.421168	NR_155535		Gm20544	-	predicted gene 20544	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-122747049-2	chr10	122746949	122747149	+	711.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110218, intron 1 of 9)	intron (NM_001110218, intron 1 of 9)	67734.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-106141494-2	chr8	106141394	106141594	+	578.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-4520.0	NM_176838	77411.0	Mm.183003	NM_176838	ENSMUSG00000084128	Esrp2	9530027K23Rik|Rbm35b	epithelial splicing regulatory protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-82767237-4	chr18	82767129	82767329	+	805.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-8190.0	NR_045389	76961.0	Mm.396392	NR_045389	ENSMUSG00000101773	2210420H20Rik	-	RIKEN cDNA 2210420H20 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-121341917-4	chr6	121341820	121342020	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1156.0	NM_001347433	14411.0	Mm.274506	NM_133661	ENSMUSG00000030109	Slc6a12	BGT1|GAT-2|GAT2|Gabt2	solute carrier family 6 (neurotransmitter transporter, betaine/GABA), member 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-32881368-3	chr5	32881265	32881465	+	891.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360014, intron 7 of 40)	RMER6D|LTR|ERVK	17644.0	NM_001170567	277854.0	Mm.101524	NM_177786	ENSMUSG00000037426	Depdc5	AV016528	DEP domain containing 5	protein-coding	1.69682568838291	1.72199392282111	1.22076347472556	1.92741093305918	2.72276993248583	2.06998691956452	1.85123799037783	2.53531424386907	1.81214027713465	0.064906000743511	0.381238020685694
Merged-chr2-167385594-3	chr2	167385528	167385728	+	732.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36082.0	NM_148929	77031.0	Mm.278924	NM_148929	ENSMUSG00000039463	Slc9a8	1200006P13Rik|6430709P13Rik|AI182282|NHE-8|NHE8	solute carrier family 9 (sodium/hydrogen exchanger), member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-11710109-1	chr2	11710009	11710209	+	544.0	f1_balb.idr	intron (NM_001271499, intron 1 of 6)	B4A|SINE|B4	4397.0	NM_001271500	16169.0	Mm.200196	NM_008358	ENSMUSG00000023206	Il15ra	AA690181|IL-15RA	interleukin 15 receptor, alpha chain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-97964356-2	chr16	97964256	97964456	+	690.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1734.0	NM_001320385	114565.0	Mm.474489	NM_175428	ENSMUSG00000046962	Zbtb21	5430437K12Rik|B430213I24Rik|Zfp295|Znf295|mKIAA1227	zinc finger and BTB domain containing 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4115889-2	chr19	4115789	4115989	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016666, intron 4 of 6)	intron (NM_016666, intron 4 of 6)	5686.0	NM_001276284	11632.0	Mm.10433	NM_016666	ENSMUSG00000024847	Aip	AA408703|AW476050|Ara9|D19Bwg1412e|Fkbp16|Xap2	aryl-hydrocarbon receptor-interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135150386-2	chr5	135150286	135150486	+	828.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013763, intron 1 of 6)	intron (NM_013763, intron 1 of 6)	675.0	NM_013763	27368.0	Mm.36746	NM_013763	ENSMUSG00000005374	Tbl2	C76179|WS-bTRP	transducin (beta)-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-72710598-3	chr14	72710493	72710693	+	916.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207636)	promoter-TSS (NM_207636)	-590.0	NM_207636	319448.0	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-19854235-1	chr13	19854135	19854335	+	739.0	f0_balb.idr	Intergenic	Intergenic	-29978.0	NM_181754	353346.0	Mm.239268	NM_181754	ENSMUSG00000053101	Gpr141	PGR13	G protein-coupled receptor 141	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-61129439-2	chr18	61129339	61129539	+	809.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037859, intron 19 of 21)	intron (NM_001037859, intron 19 of 21)	11971.0	NR_105949	102466212.0		NR_105949	ENSMUSG00000098389	Mir6983	Gm27496|mmu-mir-6983	microRNA 6983	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-116006374-2	chr3	116006274	116006474	+	793.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023214, intron 2 of 10)	intron (NM_023214, intron 2 of 10)	1032.0	NM_023214	66500.0	Mm.34550	NM_023214	ENSMUSG00000054414	Slc30a7	1810059J10Rik|2610034N15Rik|4833428C12Rik|AI467242|ZnT-7|ZnT7|Zntl2	solute carrier family 30 (zinc transporter), member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-32292967-4	chr12	32292865	32293065	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR67B|LTR|ERVL	-84316.0	NM_001146200	30955.0	Mm.101369	NM_020272	ENSMUSG00000020573	Pik3cg	5830428L06Rik|PI3Kgamma|p110gamma	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-139119592-2	chr7	139119492	139119692	+	690.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021302, intron 8 of 11)	intron (NM_021302, intron 8 of 11)	33591.0	NM_011993	26757.0	Mm.250414	NM_011993	ENSMUSG00000025478	Dpysl4	AI173505|CRMP-3|Crmp3|DPY4|Drp-4|Ulip4	dihydropyrimidinase-like 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19270235-2	chr7	19270135	19270335	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009499, intron 1 of 12)	intron (NM_009499, intron 1 of 12)	1619.0	NM_001282021	22323.0	Mm.9684	NM_009499	ENSMUSG00000030403	Vasp	-	vasodilator-stimulated phosphoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-79859315-2	chr10	79859215	79859415	+	912.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077363, intron 4 of 13)	intron (NM_001077363, intron 4 of 13)	-3272.0	NR_105875	102465549.0		NR_105875	ENSMUSG00000098562	Mir6910	Gm27763|mmu-mir-6910	microRNA 6910	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167962516-4	chr2	167962420	167962620	+	764.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011201, intron 1 of 8)	intron (NM_011201, intron 1 of 8)	30193.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-50438223-3	chr3	50438106	50438306	+	958.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011990, intron 2 of 11)	intron (NM_011990, intron 2 of 11)	5407.0	NM_011990	26570.0	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	1.53964714669317	1.21126486335185	1.87508599719313	1.97584337675387	2.79373698787543	2.64970987265413	1.18177490283621	3.27467054627459	2.23498605947625	0.0273899575486156	0.222746075916148
Merged-chr7-121289195-1	chr7	121289095	121289295	+	592.666687	f0_balb.idr	Intergenic	Intergenic	-103101.0	NM_001081327	195646.0	Mm.247449	NM_177575	ENSMUSG00000046321	Hs3st2	6430516N12Rik|A830061E14Rik|AW491345	heparan sulfate (glucosamine) 3-O-sulfotransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-55956266-2	chr17	55956166	55956366	+	831.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_108021, exon 3 of 3)	non-coding (NR_108021, exon 3 of 3)	-2921.0	NM_028381	72886.0	Mm.22796	NM_028381	ENSMUSG00000003208	Ccdc94	2900016D05Rik|AI413813	coiled-coil domain containing 94	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-78062465-2	chr10	78062365	78062565	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081695, intron 13 of 13)	Lx5|LINE|L1	-6903.0	NM_015790	50723.0	Mm.17819	NM_015790	ENSMUSG00000000732	Icosl	AU044799|B7-H2|B7RP-1|B7h|BG071784|GI50|GL50|GL50-B|ICOS-L|Icoslg|LICOS|Ly115l|mKIAA0653	icos ligand	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-168154645-4	chr2	168154524	168154724	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040327)	promoter-TSS (NR_040327)	-111.0	NR_040327	77017.0	Mm.407822	NR_040327	ENSMUSG00000087648	E130018N17Rik	-	RIKEN cDNA E130018N17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-78065038-2	chr18	78064938	78065138	+	831.083374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7770.0	NM_001101038	620235.0	Mm.35607	NM_001101038	ENSMUSG00000091055	Siglec15	Cd33l3|EG620235|SIGLEC-I	sialic acid binding Ig-like lectin 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-36611493-2	chr15	36611393	36611593	+	703.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-2520.0	NM_008774	18458.0	Mm.371570	NM_008774	ENSMUSG00000022283	Pabpc1	PABP|Pabp1|PabpI|Pabpl1|ePAB	poly(A) binding protein, cytoplasmic 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141170063-4	chr7	141169965	141170165	+	921.55835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001172100, intron 1 of 9)	RMER5|LTR|ERV1	-1129.0	NM_145135	107702.0	Mm.197493	NM_145135	ENSMUSG00000038650	Rnh1	AW546468|C80305|RNH	ribonuclease/angiogenin inhibitor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-113120986-4	chr6	113120887	113121087	+	995.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_173005, exon 13 of 21)	exon (NM_173005, exon 13 of 21)	16052.0	NM_173005	72895.0	Mm.367159	NM_028385	ENSMUSG00000034269	Setd5	2900045N06Rik|C330007C20|C85544|mKIAA1757	SET domain containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-95828940-4	chr15	95828851	95829051	+	953.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155276, intron 1 of 1)	intron (NR_155276, intron 1 of 1)	1121.0	NR_155277	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-92336566-3	chr16	92336463	92336663	+	787.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15122.0	NM_029252	75328.0	Mm.72970	NM_029252	ENSMUSG00000051728	4930563D23Rik	-	RIKEN cDNA 4930563D23 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-62697124-3	chr1	62697008	62697208	+	678.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6209.0	NM_001077406	18187.0	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-44218735-2	chr5	44218635	44218835	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173764, intron 1 of 13)	intron (NM_173764, intron 1 of 13)	7871.0	NM_173764	231225.0	Mm.30688	NM_173764	ENSMUSG00000046985	Tapt1	4932414K18Rik	transmembrane anterior posterior transformation 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65581876-2	chr9	65581755	65581955	+	765.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-1768.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	-0.314689697730229	-0.55384899836632	-0.557048883653525	-0.559505741032878	-0.308649554824444	-0.553125298296825	-0.556344623739275	-0.0515483912832493	1.60665056417396	0.549904192954923	1
Merged-chr15-31292507-2	chr15	31292407	31292607	+	738.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_027496, exon 4 of 4)	3' UTR (NM_027496, exon 4 of 4)	68122.0	NM_146057	223453.0	Mm.222867	NM_146057	ENSMUSG00000039168	Dap	4921531N22Rik|AI789753|AU040360	death-associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-140674484-3	chr4	140674381	140674581	+	940.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8576.0	NM_001112722	72754.0	Mm.29329	NM_172415	ENSMUSG00000040964	Arhgef10l	2810441C07Rik	Rho guanine nucleotide exchange factor (GEF) 10-like	protein-coding	4.84941394329901	4.92070173445316	4.61394995321489	4.83085442718706	3.7418107446944	3.70187789950776	2.96560618176122	2.99973472989985	-1.87352242030083	1.79163256937064e-05	0.000744665389167744
Merged-chr19-16084490-4	chr19	16084392	16084592	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48339.0	NM_008139	14682.0	Mm.439701	NM_008139	ENSMUSG00000024639	Gnaq	1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI	guanine nucleotide binding protein, alpha q polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-139188407-3	chr7	139188281	139188481	+	797.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_021302, exon 1 of 12)	5' UTR (NM_021302, exon 1 of 12)	113.0	NM_021302	57740.0	Mm.65336	NM_021302	ENSMUSG00000015981	Stk32c	PKE|Pkek|YANK3	serine/threonine kinase 32C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19846956-2	chr7	19846856	19847056	+	638.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-5047.0	NM_001270489	100502736.0	Mm.445354	NM_001270489	ENSMUSG00000092216	Gm19345	-	predicted gene, 19345	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122612421-1	chr8	122612321	122612521	+	553.0	f1_balb.idr	promoter-TSS (NM_016722)	promoter-TSS (NM_016722)	795.0	NM_021502	59005.0	Mm.38746	NM_021502	ENSMUSG00000015013	Trappc2l	1810017G16Rik|AB030200|Hspc176|Tca17	trafficking protein particle complex 2-like	protein-coding	-1.39239040096365	-1.50706362993767	-1.51637061241093	-1.52401564492204	-1.25712099376264	-1.5050467680107	-1.51426371558223	-1.52264718775774	0.640753741356348	0.855918148133186	1
Merged-chr15-76879195-4	chr15	76879098	76879298	+	971.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358816)	promoter-TSS (NM_001358816)	-55.0	NM_145916	223669.0	Mm.38948	NM_145916	ENSMUSG00000033669	Zfp7	KRAB20|KRAB7|Krox-2|Zfp-7|Zfp65|Zfp80|Zfp86-rs1|mszf73-2	zinc finger protein 7	protein-coding	2.57556455647365	1.55000578783319	3.11906203387775	3.11380383159189	3.05206027331938	1.56238258230625	3.91917595945703	3.54560646975148	0.9112691765519	0.277225471124881	0.781366007374687
Merged-chr19-26607967-3	chr19	26607847	26608047	+	899.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011416, intron 1 of 32)	intron (NM_011416, intron 1 of 32)	2787.0	NM_011416	67155.0	Mm.491146	NM_011416	ENSMUSG00000024921	Smarca2	2610209L14Rik|SNF2alpha|Snf2l2|brahma|brm	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80753901-1	chr7	80753801	80754001	+	944.0	f1_c57bl6.idr	intron (NM_016721, intron 11 of 37)	intron (NM_016721, intron 11 of 37)	49430.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	-0.783503106851631	-0.460202503909543	-0.621369404159987	-0.780484302905232	-0.783056657683451	-0.599511233790227	-0.617432813071026	-0.780164225044924	-0.617071156738823	0.817950779405524	1
Merged-chr4-124659402-2	chr4	124659302	124659502	+	679.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011141, exon 1 of 1)	3' UTR (NM_011141, exon 1 of 1)	1756.0	NM_011141	18991.0	Mm.297371	NM_011141	ENSMUSG00000090125	Pou3f1	Oct-6|Oct6|Otf-6|Otf6|Scip|Test1|Tst-1|Tst1	POU domain, class 3, transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-62149708-2	chr15	62149608	62149808	+	709.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_003368, intron 3 of 8)	MLT1B|LTR|ERVL-MaLR	69743.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-36031144-1	chr12	36031044	36031244	+	713.0	f1_balb.idr	intron (NM_025359, intron 1 of 5)	intron (NM_025359, intron 1 of 5)	11334.0	NM_025359	66109.0	Mm.254663	NM_025359	ENSMUSG00000020577	Tspan13	1100001I23Rik|NET-6|Tm4sf13	tetraspanin 13	protein-coding	1.8048470397309	1.49441593153719	0.890077842707131	0.877172491683362	1.82189808178557	1.50635494045402	0.893724090200483	1.74940671397679	0.685338234507098	0.616323204970798	0.977352076822579
Merged-chr11-94676047-2	chr11	94675947	94676147	+	672.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145828, intron 1 of 10)	intron (NM_145828, intron 1 of 10)	1446.0	NM_145828	217119.0	Mm.100638	NM_145828	ENSMUSG00000020868	Xylt2	E030002B02Rik|XT-II|XT2|xylT-II	xylosyltransferase II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-6627980-4	chr11	6627853	6628053	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6A|LTR|ERVK	-1886.0	NM_134011	21379.0	Mm.247761	NM_134011	ENSMUSG00000000384	Tbrg4	2310042P22Rik|AA120735|AA408001|AI527316|Cpr2|R74877|Tb-12|mKIAA0948	transforming growth factor beta regulated gene 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-3719627-3	chr2	3719540	3719740	+	885.2000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025626, intron 1 of 3)	L1_Mus3|LINE|L1	6182.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-120185167-2	chr6	120185067	120185267	+	893.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_016718, intron 1 of 3)	B1F1|SINE|Alu	-8656.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	0.875248411461227	0.928420790022341	1.71849515841908	1.66459723341941	1.58527434328719	0.932193103581003	1.93809263208861	1.67413616320243	0.730105774793471	0.587084503946347	0.967957151188163
Merged-chr12-33342252-2	chr12	33342152	33342352	+	613.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033436, intron 3 of 7)	intron (NM_001033436, intron 3 of 7)	39737.0	NM_001033436	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-71285277-4	chr10	71285183	71285383	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145420)	promoter-TSS (NM_145420)	-21.0	NM_145420	216080.0	Mm.270530	NM_145420	ENSMUSG00000019927	Ube2d1	UBCH5	ubiquitin-conjugating enzyme E2D 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-83666681-3	chr8	83666571	83666771	+	971.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013641)	promoter-TSS (NM_013641)	27.0	NM_013641	19216.0	Mm.213000	NM_013641	ENSMUSG00000019464	Ptger1	EP1|Ptgerep1	prostaglandin E receptor 1 (subtype EP1)	protein-coding	-0.738752172479414	-0.86616149240021	-0.698973493242578	-0.874441807924433	-0.877480202638124	-0.863509057071176	-0.871666332081889	-0.346776634251292	1.02989444866643	0.721332715628722	1
Merged-chr16-97778829-3	chr16	97778731	97778931	+	648.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15076.0	NM_023663	72388.0	Mm.35290	NM_023663	ENSMUSG00000005251	Ripk4	2310069J12Rik|AI552420|ANKK2|Ankrd3|DIk|PKK|RIP4	receptor-interacting serine-threonine kinase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-30163309-3	chr11	30163228	30163428	+	999.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175836, intron 1 of 34)	intron (NM_175836, intron 1 of 34)	34929.0	NM_009260	20742.0	Mm.123110	NM_009260	ENSMUSG00000020315	Sptbn1	9930031C03Rik|AL033301|SPTB2|Spnb-2|Spnb2|elf1|elf3|mKIAA4049	spectrin beta, non-erythrocytic 1	protein-coding	1.83853988924302	2.53984630881765	1.48284325561366	2.65743477849005	4.07559938497552	4.26921106281971	2.77064219587365	4.10552002786027	2.84933111254566	6.19183158039421e-05	0.00209606595578317
Merged-chr2-163419632-4	chr2	163419525	163419725	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025699)	promoter-TSS (NM_025699)	-146.0	NR_151490	108168734.0	Mm.440000	NR_151490		2900093K20Rik	-	RIKEN cDNA 2900093K20 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97478527-1	chr6	97478427	97478627	+	656.0	f1_balb.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	9293.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	2.22673337484214	2.1503024411987	1.55140052585281	1.51254787706768	1.5952781266607	1.16728010220895	1.86016212569912	2.02553701294101	-0.586465665858749	0.583429900323401	0.966599221005409
Merged-chr17-36193772-4	chr17	36193662	36193862	+	832.145813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3611.0	NM_008208	15043.0	Mm.426002	NM_008208	ENSMUSG00000054128	H2-T3	H-2T3|H2-Tw3|MumuTL|TL	histocompatibility 2, T region locus 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-85256294-1	chr1	85256194	85256394	+	1000.0	f1_balb.idr	intron (NM_001037909, intron 3 of 6)	intron (NM_001037909, intron 3 of 6)	14272.0	NM_175219	620078.0	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik	RIKEN cDNA C130026I21 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-152741314-2	chr2	152741206	152741406	+	929.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TTTG)n|Simple_repeat|Simple_repeat	5055.0	NM_001355113	15901.0	Mm.444	NM_010495	ENSMUSG00000042745	Id1	AI323524|D2Wsu140e|Idb1|bHLHb24	inhibitor of DNA binding 1	protein-coding	0.763215935475597	1.25812983639013	0.497779936163882	0.665281403059248	0.637361766046806	1.03182973778759	0.499711628280092	1.05905515829942	-0.00885144330158252	0.99552798320293	1
Merged-chr2-35197520-2	chr2	35197420	35197620	+	618.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026697, intron 1 of 7)	B1_Mus2|SINE|Alu	3600.0	NM_026697	68365.0	Mm.198264	NM_026697	ENSMUSG00000026878	Rab14	0610030G24Rik|2810475J17Rik|A830021G03Rik|AI314285|AI649155|D030017L14Rik	RAB14, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101936124-4	chr7	101936023	101936223	+	960.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR4_MM-int|LTR|ERV1	-2266.0	NM_001162974	69358.0	Mm.214841	NM_027053	ENSMUSG00000064307	Lrrc51	1700008D07Rik|Lrtomt	leucine rich repeat containing 51	protein-coding	-1.8418762459921	-1.8125357239735	-1.82140854000656	-1.82869693527674	-1.56059678980999	-1.8106129477253	-1.81939992894326	-1.82739231600805	1.3620893379502	0.699511506488145	1
Merged-chr8-111033789-4	chr8	111033711	111033911	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146217)	promoter-TSS (NM_146217)	-31.0	NM_146217	234734.0	Mm.24174	NM_146217	ENSMUSG00000031960	Aars	AI316495|C76919|sti	alanyl-tRNA synthetase	protein-coding	6.06724803296074	6.266700501905	6.51408379942112	5.8406874915285	6.16452962844455	5.97553605100086	5.95069200821671	6.18401186103591	-0.12439449806661	0.588409603015127	0.968414048967832
Merged-chr15-100703201-2	chr15	100703101	100703301	+	645.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161768, intron 6 of 11)	intron (NM_001161768, intron 6 of 11)	-15281.0	NM_033612	109901.0	Mm.2131	NM_033612	ENSMUSG00000023031	Cela1	1810009A17Rik|1810062B19Rik|Ela-1|Ela1|PC-TsF	chymotrypsin-like elastase family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-88271618-2	chr8	88271518	88271718	+	550.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007406)	promoter-TSS (NM_007406)	-785.0	NM_007406	11513.0	Mm.288206	NM_007406	ENSMUSG00000031659	Adcy7	AA407758	adenylate cyclase 7	protein-coding	0.051414319672614	-0.271116873743621	-0.117389652050175	0.102592075398086	-0.152252991540843	-0.270332661988415	-0.113266744687527	-0.276767628116127	-1.68759314805765	0.449135163874478	1
Merged-chr15-77757106-4	chr15	77756992	77757192	+	846.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357895)	promoter-TSS (NM_001357895)	-82.0	NM_001357895	239552.0	Mm.125650	NM_001081970	ENSMUSG00000056656	Apol8	9830006J20Rik|APOL-II|Apol2	apolipoprotein L 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83068538-2	chr11	83068438	83068638	+	861.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011408, intron 1 of 1)	B3|SINE|B2	3426.0	NM_011408	20556.0	Mm.278689	NM_011408	ENSMUSG00000072620	Slfn2	Shlf2	schlafen 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116807316-1	chr11	116807216	116807416	+	910.3333130000001	f0_balb.idr	3' UTR (NM_001347633, exon 5 of 5)	3' UTR (NM_001347633, exon 5 of 5)	20730.0	NM_026280	67622.0	Mm.64962	NM_026280	ENSMUSG00000020814	Mxra7	1810057P16Rik|E130302J09Rik	matrix-remodelling associated 7	protein-coding	-1.35953612152312	-1.32466147805743	-1.48871671803687	-1.49676950319435	-1.50905536753953	-1.32253704552342	-1.48649744853267	-1.4953280585013	-0.636509830385826	0.841977096763708	1
Merged-chr12-21414444-2	chr12	21414344	21414544	+	591.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011739, intron 1 of 4)	intron (NM_011739, intron 1 of 4)	2992.0	NM_011739	22630.0	Mm.289630	NM_011739	ENSMUSG00000076432	Ywhaq	2700028P07Rik|AA409740|AU021156|R74690	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83831864-4	chr6	83831760	83831960	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146169)	promoter-TSS (NM_146169)	-119.0	NM_146169	232164.0	Mm.404420	NM_146169	ENSMUSG00000045896	Paip2b	-	poly(A) binding protein interacting protein 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-30474789-4	chr17	30474692	30474892	+	802.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172618, intron 6 of 11)	intron (NM_172618, intron 6 of 11)	-78612.0	NR_030688	623169.0	Mm.440508	NR_030688		Gm6402	EG623169	ribosomal protein S17 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-62544408-4	chr17	62544317	62544517	+	875.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	336900.0	NM_207654	13640.0	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-103184030-3	chr9	103183931	103184131	+	852.64447	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_173781, exon 8 of 8)	3' UTR (NM_173781, exon 8 of 8)	18034.0	NM_009275	20818.0	Mm.273053	NM_009275	ENSMUSG00000032553	Srprb	AA409543	signal recognition particle receptor, B subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-47587965-2	chr9	47587882	47588082	+	725.833374	f0_balb.idr|f1_balb.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	57630.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	1.92592196841897	1.7418411255339	2.52321644804048	2.18947913160507	2.79194284484568	1.98857969071267	3.10398823567448	3.375537804375	1.61962141450332	0.0469183417743572	0.313525597648382
Merged-chr10-83637525-4	chr10	83637418	83637618	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145220, intron 2 of 20)	intron (NM_145220, intron 2 of 20)	11146.0	NM_145220	216190.0	Mm.282985	NM_145220	ENSMUSG00000020263	Appl2	Dip3b	adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-6710604-2	chr11	6710504	6710704	+	861.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9433.0	NR_046025	626419.0	Mm.390334	NR_046025	ENSMUSG00000086808	Gm11981	-	predicted gene 11981	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-110769587-2	chr5	110769487	110769687	+	719.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029337, intron 1 of 51)	B1F|SINE|Alu	1130.0	NM_029337	75560.0	Mm.270487	NM_029337	ENSMUSG00000029505	Ep400	1700020J09Rik|AU023439|mDomino|mKIAA1498|p400	E1A binding protein p400	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-79440581-5	chr15	79440481	79440681	+	914.7999880000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359863, intron 1 of 10)	intron (NM_001359863, intron 1 of 10)	1237.0	NM_001289899	27373.0	Mm.30199	NM_013767	ENSMUSG00000022433	Csnk1e	AI426939|AI551861|AW457082|CK1epsilon|CKIe|KC1epsilon|tau	casein kinase 1, epsilon	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-3973118-4	chr10	3973016	3973216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172308)	promoter-TSS (NM_172308)	41.0	NM_172308	270685.0	Mm.184752	NM_172308	ENSMUSG00000040675	Mthfd1l	2410004L15Rik|AI647056|Fthfsdc1	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-4948166-4	chr18	4948044	4948244	+	831.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-98445.0	NM_153153	225115.0	Mm.136791	NM_153153	ENSMUSG00000024236	Svil	AU024053|B430302E16Rik	supervillin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-69666395-4	chr18	69666276	69666476	+	848.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 15 of 19)	intron (NM_001361128, intron 15 of 19)	-259183.0	NM_201362	381175.0	Mm.266831	NM_201362	ENSMUSG00000038903	Ccdc68	BC046343	coiled-coil domain containing 68	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-83235643-3	chr4	83235567	83235767	+	747.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027238, intron 17 of 19)	intron (NM_027238, intron 17 of 19)	88522.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	-0.125705419177341	0.193174088684981	0.370345140516405	-0.121306711851367	-0.00145138617969126	0.199758013479942	-0.117852755184703	-0.120839854929982	-1.02818235128022	0.647142627219667	1
Merged-chr15-30610201-1	chr15	30610101	30610301	+	784.0	f1_balb.idr	intron (NM_001355502, intron 3 of 21)	L1MD2|LINE|L1	-428925.0	NR_045186	73784.0	Mm.66947	NR_045186	ENSMUSG00000115474	4930430F21Rik	-	RIKEN cDNA 4930430F21 gene	ncRNA	0.584569267836516	0.624096169755496	0.611398557384173	1.34484107985966	0.587106813909976	1.58447084410896	1.29386015315901	1.35392265199232	1.77071347289643	0.278486268231725	0.781890385236561
Merged-chr7-141219436-4	chr7	141219325	141219525	+	986.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_025886)	TTS (NM_025886)	2068.0	NR_029793	387206.0		NR_029793	ENSMUSG00000065551	Mir210	Mirn210|mir-210|mmu-mir-210	microRNA 210	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-79729830-2	chr7	79729730	79729930	+	627.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175640, intron 3 of 8)	intron (NM_175640, intron 3 of 8)	2946.0	NM_175640	103968.0	Mm.254917	NM_175640	ENSMUSG00000030546	Plin1	6030432J05Rik|Peri|Plin	perilipin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-165612912-1	chr1	165612812	165613012	+	543.0	f0_balb.idr	intron (NM_001083897, intron 1 of 5)	RLTR19-int|LTR|ERVK	21629.0	NM_001001880	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-66568027-4	chr15	66567930	66568130	+	759.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6984.0	NM_172514	213068.0	Mm.132299	NM_172514	ENSMUSG00000036944	Tmem71	AI661017|E430024D12	transmembrane protein 71	protein-coding	2.57560509266873	2.57798425435021	1.64273297222148	3.42741504680435	2.18560007203295	3.01385567210242	1.655402144477	2.00532032965036	-0.787674158786456	0.372568844433561	0.865109408625856
Merged-chr18-25472135-1	chr18	25472035	25472235	+	647.0	f0_balb.idr	Intergenic	Intergenic	207613.0	NM_001362337	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-94317734-3	chr11	94317661	94317861	+	615.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361574, intron 1 of 9)	B3|SINE|B2	4202.0	NR_155069	67684.0	Mm.30927	NM_026313	ENSMUSG00000020863	Luc7l3	3300001P08Rik|Luc7a	LUC7-like 3 (S. cerevisiae)	protein-coding	0.979382392055721	1.10572042788645	2.37426373808374	1.67451097503784	0.763783389608906	1.11444454607861	2.2472919020425	0.793722686972231	-0.698150947606733	0.600668679642345	0.972964840983327
Merged-chr2-148488274-3	chr2	148488221	148488421	+	697.133362	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-44786.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71093301-4	chr17	71093187	71093387	+	902.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083934, intron 21 of 36)	intron (NM_001083934, intron 21 of 36)	73730.0	NM_001083934	17929.0	Mm.4103	NM_010867	ENSMUSG00000024049	Myom1	D430047A17Rik	myomesin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-41451018-2	chr10	41450918	41451118	+	924.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NR_102360, intron 1 of 6)	intron (NR_102360, intron 1 of 6)	660.0	NR_102360	268294.0	Mm.258475	NM_153398	ENSMUSG00000019826	Zbtb24	BC055367|Bif1|Bsg1|ZNF450	zinc finger and BTB domain containing 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-68916330-3	chr10	68916227	68916427	+	882.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	192581.0	NM_177794	327766.0	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-45783661-4	chr19	45783571	45783771	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_151594)	promoter-TSS (NR_151594)	-118.0	NM_023799	76055.0	Mm.122725	NM_023799	ENSMUSG00000025220	Mgea5	Hy5|Ncoat|OGA	meningioma expressed antigen 5 (hyaluronidase)	protein-coding	7.28409509571445	6.91654129679882	7.20299633649483	6.93298356271416	7.38908604707526	6.88766004243134	7.11543842329603	6.90656781421704	-0.00196973356142852	0.991276095040222	0.998431161219273
Merged-chr15-6411553-4	chr15	6411453	6411653	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037905, intron 1 of 13)	intron (NM_001037905, intron 1 of 13)	24805.0	NM_001310446	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-73093099-4	chr11	73092989	73093189	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361245, intron 1 of 30)	intron (NM_001361245, intron 1 of 30)	2494.0	NM_172944	16407.0	Mm.96	NM_008399	ENSMUSG00000005947	Itgae	A530055J10|CD103|aM290|alpha-E1|alpha-M290	integrin alpha E, epithelial-associated	protein-coding	4.87865109054475	3.68225593795222	4.2645312922062	5.1325322497495	5.17741481833337	3.99974432462339	4.41545675601766	5.06525371250993	0.180572700877427	0.678622735851927	0.995044270582299
Merged-chr6-50255041-4	chr6	50254939	50255139	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018769, intron 1 of 9)	intron (NM_018769, intron 1 of 9)	6730.0	NM_018769	54722.0	Mm.248361	NM_018769	ENSMUSG00000029821	Gsdme	2310037D07Rik|4932441K13Rik|Dfna5|Dfna5h|EG14210|Fin15	gasdermin E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131092862-2	chr1	131092762	131092962	+	739.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008551, intron 1 of 9)	intron (NM_008551, intron 1 of 9)	4981.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	-0.743631483665407	-0.554727441376324	-0.573335971068409	-0.740136129091121	-0.608131558578769	-0.734627171127358	-0.737408204541432	-0.338923932703372	0.82668254589304	0.754437234950025	1
Merged-chr11-98850422-2	chr11	98850322	98850522	+	707.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001080925, exon 13 of 15)	exon (NM_001080925, exon 13 of 15)	-13176.0	NM_197940	68524.0	Mm.28661	NM_197940	ENSMUSG00000038013	Wipf2	1110014J05Rik|5730509C05Rik|AA407487|Gm1176|Wich|Wire	WAS/WASL interacting protein family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115484431-4	chr5	115484316	115484516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001167691)	promoter-TSS (NM_001167691)	68.0	NM_133760	75387.0	Mm.332616	NM_133760	ENSMUSG00000029524	Sirt4	4930596O17Rik	sirtuin 4	protein-coding	3.11607400167597	3.41222848861092	4.14694355215629	4.46017637436623	3.48560574719179	4.61560083151999	4.05844415027875	3.50159584337464	0.135673761171596	0.799270561014445	0.998431161219273
Merged-chr5-32744268-1	chr5	32744168	32744368	+	595.0	f1_c57bl6.idr	intron (NM_001347332, intron 2 of 8)	intron (NM_001347332, intron 2 of 8)	2074.0	NM_001347332	320951.0	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	-0.824871006521664	-0.607962970139586	-0.817648053668354	-0.820359578628137	-0.82419911099288	-0.810687265017111	-0.816873753123866	-0.0575789645474715	2.28709328693755	0.437104918743658	1
Merged-chr18-75305388-2	chr18	75305288	75305488	+	970.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8059.0	NR_045393	100503117.0	Mm.250517	NR_045393	ENSMUSG00000102047	2010010A06Rik	5033420E22Rik	RIKEN cDNA 2010010A06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-24104208-4	chr13	24104125	24104325	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026825, intron 17 of 37)	intron (NM_026825, intron 17 of 37)	-113011.0	NM_145399	214189.0	Mm.255667	NM_145399	ENSMUSG00000021337	Scgn	-	secretagogin, EF-hand calcium binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-92287116-4	chr6	92287008	92287208	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42458.0	NM_009426	22044.0	Mm.1363	NM_009426	ENSMUSG00000005892	Trh	Pro-TRH|Trf	thyrotropin releasing hormone	protein-coding	4.90129302420976	5.61131054215701	5.7577968188585	5.94764060045306	4.47900149259097	4.84455084530757	5.59773616387057	5.50496805210888	-0.486100151567393	0.15544653385537	0.610928767307068
Merged-chr11-17521994-2	chr11	17521894	17522094	+	848.8333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	264306.0	NM_001330649	57316.0	Mm.287982	NM_020558	ENSMUSG00000000581	C1d	1110036E10Rik|AI875855|SUN-CoR	C1D nuclear receptor co-repressor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101348535-2	chr7	101348435	101348635	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001040111, intron 1 of 33)	intron (NM_001040111, intron 1 of 33)	466.0	NM_001040111	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-9979561-2	chr19	9979461	9979661	+	652.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1039.0	NR_073181	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-85801404-3	chr16	85801322	85801522	+	984.8666380000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009621, intron 1 of 8)	intron (NM_009621, intron 1 of 8)	1691.0	NM_009621	11504.0	Mm.1421	NM_009621	ENSMUSG00000022893	Adamts1	ADAM-TS1|ADAMTS|ADAMTS-1|C3-C5|METH-1|METH1	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-9481747-2	chr11	9481647	9481847	+	769.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178259, intron 41 of 61)	intron (NM_178259, intron 41 of 61)	289805.0	NM_178259	268379.0	Mm.39270	NM_178259	ENSMUSG00000004668	Abca13	9830132L24|A930002G16Rik|AI956815	ATP-binding cassette, sub-family A (ABC1), member 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-94995009-2	chr11	94994909	94995109	+	700.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172261, intron 1 of 9)	intron (NM_172261, intron 1 of 9)	3797.0	NM_172261	217124.0	Mm.229087	NM_172261	ENSMUSG00000038976	Ppp1r9b	SPL|Spn	protein phosphatase 1, regulatory subunit 9B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-151572868-4	chr1	151572816	151573016	+	817.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022018, intron 1 of 13)	Lx4A|LINE|L1	1543.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102691328-4	chr12	102691277	102691477	+	946.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172584, intron 1 of 9)	intron (NM_172584, intron 1 of 9)	-6357.0	NR_035457	100316812.0		NR_035457	ENSMUSG00000089324	Mir1936	mir-1936|mmu-mir-1936	microRNA 1936	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-46856831-4	chr17	46856740	46856940	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-25427.0	NM_001100452	210982.0	Mm.37642	NM_001100452	ENSMUSG00000036568	Bicral	Gltscr1l|mKIAA0240	BRD4 interacting chromatin remodeling complex associated protein like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-17457423-2	chr14	17457323	17457523	+	622.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-203537.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-86427942-2	chr4	86427842	86428042	+	699.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_029967, exon 28 of 28)	3' UTR (NM_029967, exon 28 of 28)	130361.0	NM_001081096	75811.0	Mm.56451	NM_001081096	ENSMUSG00000028492	Saxo1	4930500O09Rik|Fam154a	stabilizer of axonemal microtubules 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-106782173-4	chr3	106782085	106782285	+	783.775024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007651, intron 1 of 7)	Lx6|LINE|L1	7964.0	NM_007651	12508.0	Mm.316861	NM_007651	ENSMUSG00000040747	Cd53	AI323659|Ox-44|Tspan25	CD53 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16295586-4	chr7	16295492	16295692	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-8797.0	NM_001136471	243846.0	Mm.482401	NM_172297	ENSMUSG00000041375	Ccdc9	2600011L02Rik	coiled-coil domain containing 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28258423-2	chr17	28258323	28258523	+	571.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011145, intron 2 of 7)	MLT1A1|LTR|ERVL-MaLR	-13285.0	NR_045427	69050.0	Mm.486938	NR_045427	ENSMUSG00000002250	1810013A23Rik	-	RIKEN cDNA 1810013A23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-109951804-1	chr6	109951704	109951904	+	771.0	f1_c57bl6.idr	Intergenic	Intergenic	-693708.0	NM_001346640	108073.0	Mm.240881	NM_177328	ENSMUSG00000056755	Grm7	6330570A01Rik|BB176677|C030018L03|E130018M02Rik|Gpr1g|Gprc1g|SMN2|Tg(SMN2)89Ahmb|mGluR7	glutamate receptor, metabotropic 7	protein-coding	-2.18292257394068	-2.15545247547656	-2.03304972317742	-2.17058342868585	-2.18099422382073	-2.1536522739386	-2.16187909550322	-2.16936197735154	-0.683654500252594	0.846597994014493	1
Merged-chr7-98719104-2	chr7	98719004	98719204	+	565.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15857.0	NM_028410	72981.0	Mm.4428	NM_028410	ENSMUSG00000030753	Thap12	2900052B10Rik|Dap4|Prkrir|Rpkrir	THAP domain containing 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-93939687-3	chr13	93939590	93939790	+	734.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009712, intron 7 of 7)	intron (NM_009712, intron 7 of 7)	-118106.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-31212689-2	chr9	31212547	31212747	+	582.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001102456)	promoter-TSS (NM_001102456)	-799.0	NM_001102456	11804.0	Mm.19133	NM_009691	ENSMUSG00000031996	Aplp2	AI790698|APLP-2|CDEBP	amyloid beta (A4) precursor-like protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-43113626-4	chr5	43113529	43113729	+	901.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-119834.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	2.02223559759029	3.92707837300958	2.53406283698413	3.00152420261966	2.86718342187482	2.91271008597898	1.50506742535385	3.25458633095814	-0.499252229166116	0.54197708813908	0.954866069207078
Merged-chr11-100703689-2	chr11	100703589	100703789	+	791.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_030150, exon 3 of 13)	exon (NM_030150, exon 3 of 13)	582.0	NM_030150	80861.0	Mm.271830	NM_030150	ENSMUSG00000017830	Dhx58	B430001I08Rik|D11Lgp2e|LPG2|Lgp2|RLR-3	DEXH (Asp-Glu-X-His) box polypeptide 58	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-96790506-3	chr7	96790405	96790605	+	705.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_045874)	TTS (NR_045874)	11044.0	NR_045874	791381.0	Mm.402112	NR_045874	ENSMUSG00000053049	Gm15413	-	predicted gene 15413	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3608530-2	chr4	3608430	3608630	+	638.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_054089, intron 12 of 12)	B3|SINE|B2	33651.0	NM_054089	116940.0	Mm.171323	NM_054089	ENSMUSG00000028233	Tgs1	D4Ertd800e|Ncoa6ip|Pimt	trimethylguanosine synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84218342-4	chr8	84218253	84218453	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172503, intron 11 of 13)	intron (NM_172503, intron 11 of 13)	-9446.0	NR_037294	100526528.0		NR_037294	ENSMUSG00000105458	Mir3074-2	mir-3074-2|mmu-mir-3074-2	microRNA 3074-2	ncRNA	1.70937877745724	0.985557706900984	2.43982350293385	0.941331059639428	1.72553656599989	2.39213372389383	1.60763943984878	0.944811824102486	0.223186660926452	0.861408479767789	0.998431161219273
Merged-chr8-122934145-4	chr8	122934049	122934249	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 2 of 12)	MT2B|LTR|ERVL	85775.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-69574120-2	chr18	69574020	69574220	+	830.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 8 of 19)	intron (NM_001361128, intron 8 of 19)	227960.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-49133001-3	chr7	49132921	49133121	+	954.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_154465, intron 3 of 3)	intron (NR_154465, intron 3 of 3)	29137.0	NR_154465	108167511.0	Mm.400599	NR_154465		9130015G15Rik	-	RIKEN cDNA 9130015G15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-8898029-4	chr19	8897923	8898123	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008060)	promoter-TSS (NM_008060)	-34.0	NM_001293621	14376.0	Mm.3196	NM_008060	ENSMUSG00000071650	Ganab	AU042638|G2an|GluII|mKIAA0088	alpha glucosidase 2 alpha neutral subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35190183-4	chr17	35190024	35190224	+	823.81665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1684.0	NM_010734	16988.0	Mm.19379	NM_010734	ENSMUSG00000073412	Lst1	B144	leukocyte specific transcript 1	protein-coding	0.995588481505712	0.849619329255325	1.96332369909876	1.4120552136098	0.783507511093456	2.49336822272183	1.62504163321874	1.05534834677689	0.839610597667819	0.520359709922738	0.947641799425091
Merged-chr8-109868505-4	chr8	109868423	109868623	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001122594)	promoter-TSS (NM_001122594)	-80.0	NM_001122594	244650.0	Mm.23494	NM_001122594	ENSMUSG00000031732	Phlpp2	AI481772|C130044A18Rik|Phlppl	PH domain and leucine rich repeat protein phosphatase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141136967-2	chr4	141136867	141137067	+	868.400024	f1_balb.idr|f1_c57bl6.idr	intron (NM_001277195, intron 1 of 3)	intron (NM_001277195, intron 1 of 3)	2829.0	NR_102344	213491.0	Mm.332006	NM_174996	ENSMUSG00000040842	Szrd1	1110022I03|D4Ertd22e	SUZ RNA binding domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-89404739-3	chr15	89404648	89404848	+	663.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162880, intron 1 of 2)	intron (NM_001162880, intron 1 of 2)	5515.0	NM_001162882	75459.0	Mm.45462	NM_001162880	ENSMUSG00000078938	Syce3	1700007E06Rik|TSEG-2|TSEG2	synaptonemal complex central element protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-81551986-4	chr17	81551861	81552061	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 2 of 8)	intron (NR_104580, intron 2 of 8)	186426.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-43453317-3	chr18	43453259	43453459	+	797.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15073.0	NM_001291455	22240.0	Mm.8180	NM_009468	ENSMUSG00000024501	Dpysl3	CRMP-4|DRP-3|TUC4|ULIP-1|Ulip|Ulip1	dihydropyrimidinase-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-110432469-3	chr7	110432361	110432561	+	702.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177324, intron 13 of 40)	intron (NM_177324, intron 13 of 40)	182459.0	NM_177324	319934.0	Mm.102970	NM_177324	ENSMUSG00000038371	Sbf2	4833411B01Rik|AA414977|AI317167|B430219L04Rik|Mtmr13|mMTMH1	SET binding factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-43082541-3	chr5	43082455	43082655	+	900.966675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-150908.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	-0.280877332585161	-0.266656455229506	0.406342184229826	-0.274906738599529	-0.279988833220479	0.241966757713766	-0.27028540352873	-0.10475059341894	-0.199831588590886	0.934550858765063	1
Merged-chr13-95639009-4	chr13	95638896	95639096	+	988.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027711, intron 30 of 35)	intron (NM_027711, intron 30 of 35)	-20530.0	NM_010169	14062.0	Mm.24816	NM_010169	ENSMUSG00000048376	F2r	AI482343|Cf2r|Par1|ThrR	coagulation factor II (thrombin) receptor	protein-coding	4.08833059689575	3.96722222084639	4.12410928007752	2.97450319905345	2.71655177718498	3.92799898189382	2.67189135909408	3.30058769264888	-0.917963002849991	0.118232368402805	0.539510125290385
Merged-chr15-81210727-3	chr15	81210639	81210839	+	792.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19886.0	NR_015603	67638.0	Mm.390832	NM_026288	ENSMUSG00000047938	4930483J18Rik	-	RIKEN cDNA 4930483J18 gene	ncRNA	3.03026379636165	2.10683935423927	1.49843388811396	3.92501629584162	2.70887149928524	3.51022362535716	2.24932719851886	3.49002924654347	0.188477001317421	0.820690056251265	0.998431161219273
Merged-chr5-25521674-2	chr5	25521574	25521774	+	956.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	5607.0	NM_198621	242891.0	Mm.291521	NM_198621	ENSMUSG00000038044	Cct8l1	Gm443	chaperonin containing TCP1, subunit 8 (theta)-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78511413-2	chr15	78511313	78511513	+	653.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16347.0	NM_008368	16185.0	Mm.35287	NM_008368	ENSMUSG00000068227	Il2rb	CD122|IL-15Rbeta|IL15Rbeta|Il-2/15Rbeta|Il-2Rbeta|p70	interleukin 2 receptor, beta chain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-31061704-2	chr6	31061604	31061804	+	823.166626	f1_balb.idr|f1_c57bl6.idr	TTS (NR_029744)	TTS (NR_029744)	1043.0	NR_029744	387222.0		NR_029744	ENSMUSG00000065610	Mir29a	Mirn29a|mir-29a|mmu-mir-29a	microRNA 29a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-119208892-4	chr2	119208762	119208962	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_139139)	promoter-TSS (NM_139139)	-67.0	NM_139139	69408.0	Mm.222241	NM_139139	ENSMUSG00000034278	Dnajc17	1700025B16Rik|C87112|D9Bwg1371e	DnaJ heat shock protein family (Hsp40) member C17	protein-coding	-0.0527562138187717	-0.0358344057827429	0.732981751213926	-0.045644133675414	0.339114374175713	-0.0345882512531673	-0.0401468707797185	0.394137063999148	-0.208086826110148	0.926733466381954	1
Merged-chr12-85667958-2	chr12	85667858	85668058	+	551.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18762.0	NM_016767	53314.0	Mm.6672	NM_016767	ENSMUSG00000034266	Batf	B-ATF|SFA-2	basic leucine zipper transcription factor, ATF-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-85262087-1	chr1	85261987	85262187	+	903.0	f1_balb.idr	intron (NM_175219, intron 1 of 7)	intron (NM_175219, intron 1 of 7)	8479.0	NM_175219	620078.0	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik	RIKEN cDNA C130026I21 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-17543375-2	chr17	17543277	17543477	+	967.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172827, intron 13 of 17)	RMER13A|LTR|ERVK	81112.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-12252338-4	chr17	12252234	12252434	+	965.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357722, intron 11 of 25)	RLTR44A|LTR|ERVK	66326.0	NM_011948	26407.0	Mm.28587	NM_011948	ENSMUSG00000014426	Map3k4	D17Rp17|D17Rp17e|MAPKKK4|MEKK 4|MTK1|Mek4b|Mekk4|RP17|Rp17a|Tas|mKIAA0213	mitogen-activated protein kinase kinase kinase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-62613060-2	chr12	62612960	62613160	+	914.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74727.0	NR_131949	73309.0	Mm.276558	NR_131949		Spanxn4	1700047L15Rik	SPANX family, member N4	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-62354121-3	chr14	62354017	62354217	+	779.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026001, intron 5 of 10)	L1M2|LINE|L1	22049.0	NM_026001	67153.0	Mm.26040	NM_026001	ENSMUSG00000021932	Rnaseh2b	1110019N06Rik|2610207P08Rik|Dleu8	ribonuclease H2, subunit B	protein-coding	1.83206867022391	1.83085242311827	1.06173051586267	1.04577602415668	1.7495233042691	1.53109995500375	1.903334889624	2.21022277295828	1.12011024262143	0.3368206742893	0.83703930093451
Merged-chr15-99330232-3	chr15	99330135	99330335	+	727.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310622, intron 5 of 25)	intron (NM_001310622, intron 5 of 25)	26951.0	NM_001348256	54614.0	Mm.358668	NM_018786	ENSMUSG00000023007	Prpf40b	2610317D23Rik|Hypc	pre-mRNA processing factor 40B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-3456513-4	chr11	3456402	3456602	+	761.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028317, intron 1 of 3)	B3|SINE|B2	-3546.0	NM_001290473	193670.0	Mm.136973	NM_145355	ENSMUSG00000020448	Rnf185	-	ring finger protein 185	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-105545204-4	chr5	105545087	105545287	+	966.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133897, intron 2 of 3)	RLTR17|LTR|ERVK	25716.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	2.31852666991441	3.09152402157226	2.0571414533516	1.21834408201657	2.33881581560662	1.56717887210354	2.44485625137146	1.68183401630487	-0.627694634912408	0.529436873946856	0.949598905762564
Merged-chr3-95675719-4	chr3	95675677	95675877	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_144899)	TTS (NM_144899)	12140.0	NM_144899	229595.0	Mm.490574	NM_144899	ENSMUSG00000015850	Adamtsl4	ADAMTSL-4|Tsrc1	ADAMTS-like 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-48812188-3	chr16	48812100	48812300	+	894.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4656.0	NM_023881	57263.0	Mm.21123	NM_023881	ENSMUSG00000022650	Retnlb	9030012B21Rik|Fizz2|RELMbeta|Relmb|Xcp3	resistin like beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-10835076-4	chr16	10834978	10835178	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162932)	promoter-TSS (NM_001162932)	19.0	NM_001162932	223970.0	Mm.325777	NM_001033278	ENSMUSG00000037991	Rmi2	A630055G03Rik|Gm537|Gm929	RecQ mediated genome instability 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-52605545-3	chr2	52605438	52605638	+	746.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037099, intron 2 of 13)	intron (NM_001037099, intron 2 of 13)	-46927.0	NM_001285427	12298.0	Mm.330223	NM_146123	ENSMUSG00000017412	Cacnb4	3110038O15Rik|Cchb4|lh	calcium channel, voltage-dependent, beta 4 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-57680142-4	chr14	57680029	57680229	+	844.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15173.0	NM_020506	57258.0	Mm.202747	NM_020506	ENSMUSG00000021952	Xpo4	B430309A01Rik|mKIAA1721	exportin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-117915634-1	chr6	117915534	117915734	+	654.0	f0_balb.idr	intron (NM_001166428, intron 1 of 3)	intron (NM_001166428, intron 1 of 3)	-1660.0	NM_001166427	98758.0	Mm.422979	NM_133834	ENSMUSG00000042079	Hnrnpf	4833420I20Rik|AA407306|Hnrpf	heterogeneous nuclear ribonucleoprotein F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-49074332-1	chr6	49074232	49074432	+	822.0	f1_c57bl6.idr	intron (NM_029353, intron 1 of 3)	intron (NM_029353, intron 1 of 3)	537.0	NM_029353	75593.0	Mm.439947	NM_029353	ENSMUSG00000029815	Malsu1	2410003K15Rik|Matsu1	mitochondrial assembly of ribosomal large subunit 1	protein-coding	1.11030330762922	1.62354054310503	0.950499849036551	2.08041901976332	1.11851529849365	1.92623317565697	2.41092103877516	1.16967186735115	0.71600183703206	0.553651225147756	0.959743893178979
Merged-chr1-131096488-4	chr1	131096436	131096636	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008551, intron 1 of 9)	intron (NM_008551, intron 1 of 9)	1307.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-143549362-2	chr5	143549262	143549462	+	729.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133703, intron 1 of 1)	intron (NM_133703, intron 1 of 1)	656.0	NM_026050	67238.0	Mm.383219	NM_026050	ENSMUSG00000083012	Fam220a	1500026F15Rik|2810453I06Rik|AW047776|Acpin1|Sipar	family with sequence similarity 220, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-58701673-4	chr15	58701583	58701783	+	822.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	121744.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-117202429-7	chr4	117202321	117202521	+	950.738098	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19797.0	NM_134471	73804.0	Mm.247651	NM_134471	ENSMUSG00000028678	Kif2c	4930402F02Rik|ESTM5|Knsl6|MCAK|X83316	kinesin family member 2C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-49633977-3	chr18	49633878	49634078	+	892.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	110689.0	NR_033785	67321.0	Mm.245802	NR_033785	ENSMUSG00000100297	1700044K03Rik	-	RIKEN cDNA 1700044K03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-15046470-2	chr9	15046370	15046570	+	564.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019482)	promoter-TSS (NM_019482)	-992.0	NM_019482	55991.0	Mm.142253	NM_019482	ENSMUSG00000031934	Panx1	AI847747	pannexin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55111254-2	chr14	55111154	55111354	+	909.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177049, intron 3 of 5)	intron (NM_177049, intron 3 of 5)	-4661.0	NM_007455	11766.0	Mm.238879	NM_007455	ENSMUSG00000040701	Ap1g2	Adtg2|G2ad	adaptor protein complex AP-1, gamma 2 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71630734-4	chr8	71630674	71630874	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_106035)	TTS (NR_106035)	332.0	NR_106035	102466799.0		NR_106035	ENSMUSG00000098976	Mir6769b	Gm27546|mmu-mir-6769b	microRNA 6769b	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-104982702-4	chr5	104982605	104982805	+	975.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030239)	promoter-TSS (NM_030239)	12.0	NM_030239	27405.0	Mm.389663	NM_030239	ENSMUSG00000029299	Abcg3	Abcp2|Mxr2	ATP binding cassette subfamily G member 3	protein-coding	1.52564757338287	3.52150149444219	1.13507684706853	2.28203343523704	1.89474958235785	3.43389391656107	1.14530272773025	2.01121155466752	-0.09827091482022	0.927221569655492	0.998431161219273
Merged-chr14-75149473-3	chr14	75149369	75149569	+	736.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008879, intron 1 of 16)	intron (NM_008879, intron 1 of 16)	13044.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-89450226-4	chr1	89450133	89450333	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4578.0	NM_178119	347722.0	Mm.291135	NM_178119	ENSMUSG00000055013	Agap1	Centg2|Ggap1|R75364|mKIAA1099	ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-74522590-4	chr13	74522503	74522703	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28653.0	NM_146231	235956.0		NM_146231	ENSMUSG00000069208	Zfp825	-	zinc finger protein 825	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-67459289-2	chr7	67459189	67459389	+	915.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-86431.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-20298869-2	chr8	20298769	20298969	+	683.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1437.0	NR_030708	547150.0	Mm.359054	NR_030708	ENSMUSG00000071796	6820431F20Rik	-	cadherin 11 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-11433983-4	chr16	11433892	11434092	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028964, intron 11 of 20)	intron (NM_028964, intron 11 of 20)	28344.0	NM_001290148	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-74808534-4	chr17	74808431	74808631	+	952.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152817, intron 13 of 19)	intron (NM_152817, intron 13 of 19)	90781.0	NM_152817	74196.0	Mm.209503	NM_152817	ENSMUSG00000024078	Ttc27	2610511O17Rik	tetratricopeptide repeat domain 27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-65596694-4	chr6	65596597	65596797	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001495, intron 3 of 7)	intron (NM_001001495, intron 3 of 7)	6299.0	NM_001001495	414084.0	Mm.117558	NM_001001495	ENSMUSG00000044162	Tnip3	9030611K07Rik|ABIN-3|LIND	TNFAIP3 interacting protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-20466206-1	chr11	20466106	20466306	+	590.0	f0_balb.idr	Intergenic	Intergenic	-77047.0	NM_021372	58172.0	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	0.458018065554247	-0.0776300253987055	0.238152970788417	0.532814141239014	-0.0917695712945716	-0.076514467296421	-0.0814852548342102	-0.0857218624150488	-3.86895131802611	0.0860070261528572	1
Merged-chr15-101198469-6	chr15	101198415	101198615	+	823.944458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007395, intron 3 of 8)	intron (NM_007395, intron 3 of 8)	4646.0	NR_105927	102466774.0		NR_105927	ENSMUSG00000106563	Mir6962	mmu-mir-6962	microRNA 6962	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-142698154-4	chr6	142698063	142698263	+	865.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001044720, intron 2 of 39)	intron (NM_001044720, intron 2 of 39)	4111.0	NM_021041	20928.0	Mm.35670	NM_011511	ENSMUSG00000030249	Abcc9	AI414027|AI449286|SUR2A|SUR2B|Sur2	ATP-binding cassette, sub-family C (CFTR/MRP), member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-62858516-4	chr14	62858418	62858618	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175546, intron 1 of 11)	intron (NM_175546, intron 1 of 11)	-7024.0	NR_105860	102465311.0		NR_105860	ENSMUSG00000098858	Mir6541	Gm27311|mmu-mir-6541	microRNA 6541	ncRNA	5.28215570997616	4.19402588986984	4.55364508182281	4.87215795322941	5.12032346029684	5.29496073504066	4.58762961303101	5.6058965098298	0.480197616382912	0.187093252611424	0.664650072492657
Merged-chr1-171038563-4	chr1	171038461	171038661	+	955.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19635.0	NM_144559	246256.0	Mm.251254	NM_144559	ENSMUSG00000059089	Fcgr4	4833442P21Rik|CD16-2|FcgRIV|FcgammaRIV|Fcgr3a|Fcrl3	Fc receptor, IgG, low affinity IV	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-118392531-1	chr1	118392431	118392631	+	754.0	f1_balb.idr	intron (NM_001359330, intron 1 of 39)	RSINE1|SINE|B4	3473.0	NM_001359334	76707.0	Mm.138740	NM_029709	ENSMUSG00000064302	Clasp1	1700030C23Rik|5730583A19Rik|B130045P17Rik|CLASP1alpha	CLIP associating protein 1	protein-coding	-0.375859886693871	0.682850187269763	-0.557630121608154	-0.563208230029294	-0.571337491831316	-0.549045366894991	-0.556060700413793	-0.562223648843552	-4.33104349310932	0.057297107230769	1
Merged-chr9-3012580-2	chr9	3012481	3012681	+	883.625	f1_balb.idr|f1_c57bl6.idr	Intergenic	GSAT_MM|Satellite|Satellite	26162.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-91362565-2	chr13	91362465	91362665	+	578.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CCCCCA)n|Simple_repeat|Simple_repeat	25520.0	NR_045161	320297.0	Mm.375866	NR_045161	ENSMUSG00000097182	A830009L08Rik	-	RIKEN cDNA A830009L08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-115722426-4	chr6	115722327	115722527	+	965.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	36572.0	NM_144805	94346.0	Mm.29739	NM_144805	ENSMUSG00000059900	Tmem40	9030407H20Rik|AV091463|W64236	transmembrane protein 40	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-52233657-4	chr10	52233522	52233722	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347444)	promoter-TSS (NM_001347444)	3.0	NM_025705	66686.0	Mm.62982	NM_025705	ENSMUSG00000019891	Dcbld1	4631413K11Rik	discoidin, CUB and LCCL domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-110920986-4	chr7	110920887	110921087	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194464, intron 10 of 20)	intron (NM_194464, intron 10 of 20)	16002.0	NR_045267	100504184.0	Mm.441327	NR_045267	ENSMUSG00000087160	Gm16336	-	predicted gene 16336	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-22731420-4	chr10	22731290	22731490	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011603)	promoter-TSS (NM_011603)	57.0	NM_011603	237336.0	Mm.86670	NM_011603	ENSMUSG00000071359	Tbpl1	4732475G08|AW011832|AW491032|D18347|STD|TLF|TRF2|TRP|Tlp	TATA box binding protein-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-130488787-4	chr2	130488675	130488875	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355161, intron 1 of 21)	intron (NM_001355161, intron 1 of 21)	38497.0	NM_001355161	19262.0	Mm.224246	NM_008980	ENSMUSG00000027303	Ptpra	Ptpa|Ptpalpha|Rptpalpha|Rptra|Rptralpha	protein tyrosine phosphatase, receptor type, A	protein-coding	1.48733244231486	1.81943811933945	2.02370855432088	1.96579833769146	2.3084745035061	1.20482033313559	2.34535216664438	1.5648288879383	0.333304715297753	0.750598333459865	0.998431161219273
Merged-chr8-30936292-4	chr8	30936218	30936418	+	790.0625	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-153209.0	NM_025869	66959.0	Mm.23916	NM_025869	ENSMUSG00000039661	Dusp26	2310043K02Rik|Skrp3	dual specificity phosphatase 26 (putative)	protein-coding	3.01960405315101	3.0973144795675	2.8237482761345	2.82831471995973	2.70371000736785	1.45305138161216	1.685265523549	1.85018899094216	-1.88709691231221	0.0256577263750465	0.213192363103949
Merged-chr7-114067955-2	chr7	114067855	114068055	+	845.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025846, intron 1 of 5)	intron (NM_025846, intron 1 of 5)	49826.0	NM_025846	66922.0	Mm.276572	NM_025846	ENSMUSG00000055723	Rras2	2610016H24Rik|C86394|TC21	related RAS viral (r-ras) oncogene 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-122794428-2	chr14	122794328	122794528	+	884.666626	f1_balb.idr|f1_c57bl6.idr	intron (NR_153443, intron 21 of 24)	intron (NR_153443, intron 21 of 24)	-118602.0	NR_155287	105245866.0	Mm.390754	NM_001039531	ENSMUSG00000075463	Gm15735	4930594M22Rik|F930011C10Rik	predicted gene 15735	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-34557690-3	chr18	34557610	34557810	+	873.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	15382.0	NM_009290	20890.0	Mm.558	NM_009290	ENSMUSG00000012282	Wnt8a	Stra11|Wnt-8A|Wnt-8D|Wnt8d	wingless-type MMTV integration site family, member 8A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-75981092-3	chr5	75980996	75981196	+	988.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2668.0	NM_010612	16542.0	Mm.285	NM_010612	ENSMUSG00000062960	Kdr	6130401C07|Flk-1|Flk1|Krd-1|Ly73|VEGFR-2|VEGFR2|orv|sVEGFR-2	kinase insert domain protein receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-15267153-2	chr13	15267053	15267253	+	714.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-196570.0	NM_008130	14634.0	Mm.5098	NM_008130	ENSMUSG00000021318	Gli3	AI854843|AU023367|Bph|GLI3-190|GLI3FL|Pdn|Xt|add	GLI-Kruppel family member GLI3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-46920725-2	chr7	46920625	46920825	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001348089)	promoter-TSS (NM_001348089)	-756.0	NM_021884	22088.0	Mm.241334	NM_021884	ENSMUSG00000014402	Tsg101	AI255943|CC2	tumor susceptibility gene 101	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-67329617-4	chr17	67329509	67329709	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	24850.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-35363903-4	chr16	35363798	35363998	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133704)	promoter-TSS (NM_133704)	20.0	NM_133704	317717.0	Mm.259164	NM_133704	ENSMUSG00000034473	Sec22a	1810005C06Rik|Sec22l2	SEC22 homolog A, vesicle trafficking protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56443463-4	chr17	56443403	56443603	+	976.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252455, intron 6 of 27)	intron (NM_001252455, intron 6 of 27)	18718.0	NM_001252456	19280.0	Mm.258771	NM_011218	ENSMUSG00000013236	Ptprs	AL022616|PTP|PTP-NU3|PTPNU-3|PTPsigma|Ptpt9|R-PTP-S|RPTPsigma	protein tyrosine phosphatase, receptor type, S	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-96311224-2	chr11	96311124	96311324	+	564.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4314.0	NR_131758	75395.0	Mm.440014	NR_131758	ENSMUSG00000085645	Hoxb5os	0610040B09Rik|AV302770|Hoxb5/6as	homeobox B5 and homeobox B6, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3581647-4	chr19	3581592	3581792	+	748.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MuRRS-int|LTR|ERV1	-5943.0	NM_028999	52036.0	Mm.284686	NM_028999	ENSMUSG00000024908	Ppp6r3	4930528G08Rik|9130026N02Rik|D19Bwg1430e|D19Ertd703e|Pp6r3|Ppcs3|Pptcs3|Sapl|Saps3|mKIAA1558	protein phosphatase 6, regulatory subunit 3	protein-coding	-0.874119428618917	-0.994365544049861	-1.00565210462667	-1.0082216436938	-0.749494862764678	-0.653513358556951	-1.00309707470644	-1.00788854455077	1.76472443707996	0.549812000266962	1
Merged-chr4-86632614-4	chr4	86632504	86632704	+	961.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20549.0	NM_173400	230376.0	Mm.74730	NM_173400	ENSMUSG00000038047	Haus6	6230416J20Rik|9830144E06|D4Ertd27e|mKIAA1574	HAUS augmin-like complex, subunit 6	protein-coding	3.39997461058265	3.2109711660997	2.74068334804365	3.90761959755712	2.88064605155868	3.52075239231341	3.56278904512681	2.67458411750863	-0.287643815322104	0.640766318395056	0.982599433509505
Merged-chr4-144908946-4	chr4	144908805	144909005	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357274, intron 2 of 6)	intron (NM_001357274, intron 2 of 6)	15768.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114927737-4	chr11	114927654	114927854	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347651, intron 2 of 3)	intron (NM_001347651, intron 2 of 3)	6632.0	NM_001347651	217304.0	Mm.185355	NM_199221	ENSMUSG00000063193	Cd300lb	CLM-7|Clm7|Gm253|LMIR5	CD300 molecule like family member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-25357193-2	chr2	25357093	25357293	+	904.833374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031843)	promoter-TSS (NM_031843)	-861.0	NM_031843	83768.0	Mm.21440	NM_031843	ENSMUSG00000026958	Dpp7	DPPII|Dpp2|QPP	dipeptidylpeptidase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-89998139-3	chr7	89997929	89998129	+	592.5	f0_balb.idr|f0_c57.idr|f1_balb.idr	Intergenic	MYSERV16_I-int|LTR|ERVK	-17053.0	NM_021876	13626.0	Mm.380914	NM_021876	ENSMUSG00000030619	Eed	l(7)5Rn|l7Rn5|lusk	embryonic ectoderm development	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-90663091-2	chr6	90662991	90663191	+	719.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001134384, intron 13 of 13)	intron (NM_001134384, intron 13 of 13)	43845.0	NM_001037493	71699.0	Mm.272633	NM_027868	ENSMUSG00000030089	Slc41a3	1010001P06Rik|AI480742|SLC41A1-L2	solute carrier family 41, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-52455780-4	chr2	52455684	52455884	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037099, intron 9 of 13)	intron (NM_001037099, intron 9 of 13)	-30910.0	NM_182994	75423.0	Mm.314378	NM_182994	ENSMUSG00000036093	Arl5a	2410015N24Rik|2810410P22Rik|AA408731|AW610751|Arl5|T25534	ADP-ribosylation factor-like 5A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-115343267-4	chr6	115343159	115343359	+	904.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17692.0	NM_001127330	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-46889721-6	chr17	46889627	46889827	+	996.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178385)	promoter-TSS (NM_178385)	-894.0	NM_178385	72726.0	Mm.33780	NM_178385	ENSMUSG00000036430	Tbcc	2810055C19Rik	tubulin-specific chaperone C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-88702229-4	chr1	88702107	88702307	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177305)	promoter-TSS (NM_177305)	-16.0	NM_177305	320982.0	Mm.27968	NM_177305	ENSMUSG00000049866	Arl4c	A630084M22Rik|Arl7|LAK	ADP-ribosylation factor-like 4C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-85594509-1	chr1	85594409	85594609	+	702.666687	f1_balb.idr	intron (NM_030194, intron 2 of 11)	intron (NM_030194, intron 2 of 11)	4301.0	NM_030194	109032.0	Mm.335802	NM_030194	ENSMUSG00000070034	Sp110	5031415C07Rik|52kDa|5830484A20Rik|Ifi75|Ipr1	Sp110 nuclear body protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-96968761-4	chr5	96968659	96968859	+	880.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28930.0	NM_080708	140780.0	Mm.281490	NM_080708	ENSMUSG00000034663	Bmp2k	4933417M22Rik|AA673486|AV128808|BIKE	BMP2 inducible kinase	protein-coding	3.54682721654672	3.40867717832609	3.07250157103967	1.3646559611359	2.48825341639487	2.01179917432354	2.5922336806735	1.87499625623302	-1.49985624780902	0.0790623004473624	0.427632315906906
Merged-chr10-118810173-2	chr10	118810073	118810273	+	745.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	58730.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-110665249-2	chr4	110665149	110665349	+	845.0833130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001284190, intron 3 of 12)	L1_Mus2|LINE|L1	267551.0	NM_030231	78933.0	Mm.435620	NM_030231	ENSMUSG00000061298	Agbl4	4930578N11Rik|4931433A01Rik	ATP/GTP binding protein-like 4	protein-coding	-0.224083690581018	0.269481295041399	-0.215083463945921	-0.21847177435038	0.148751210837063	0.278740935396883	-0.214113756302624	-0.217880270325127	0.819808494004946	0.734764645548664	1
Merged-chr16-91528661-2	chr16	91528549	91528749	+	930.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-1105.0	NR_105786	102465190.0		NR_105786	ENSMUSG00000099308	Mir6367	Gm27467|mmu-mir-6367	microRNA 6367	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115535672-4	chr11	115535552	115535752	+	906.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133354, intron 1 of 3)	CpG	578.0	NM_133354	170930.0	Mm.29923	NM_133354	ENSMUSG00000020738	Sumo2	SUMO-2|Smt3A|Smt3b|Smt3h2	small ubiquitin-like modifier 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128967879-4	chr2	128967792	128967992	+	968.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178404, intron 1 of 11)	GC_rich|Low_complexity|Low_complexity	490.0	NM_178404	78751.0	Mm.26377	NM_178404	ENSMUSG00000042851	Zc3h6	4631426G04Rik|4833425H18Rik|AU024389|AW060453|Zc3hdc6|mKIAA2035	zinc finger CCCH type containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-69660879-1	chr13	69660779	69660979	+	858.0	f0_balb.idr	Intergenic	Intergenic	48863.0	NM_145354	28114.0	Mm.260009	NM_145354	ENSMUSG00000021595	Nsun2	D13Wsu123e|Misu	NOL1/NOP2/Sun domain family member 2	protein-coding	1.63230040441103	1.15214111993701	2.86327192905611	1.87654403747552	2.12695109448035	1.67055363371106	2.67918153169233	1.10076664214333	-0.0581013378002178	0.958459632402312	0.998431161219273
Merged-chr8-11100110-2	chr8	11100010	11100210	+	909.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-91680.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-130890256-4	chr4	130890168	130890368	+	865.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23066.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-167340525-5	chr1	167340390	167340590	+	870.2000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	-9501.0	NM_019993	56752.0	Mm.292539	NM_019993	ENSMUSG00000026687	Aldh9a1	AA139417|Abaldh|ESTM40|TMABA-DH|Tmabadh	aldehyde dehydrogenase 9, subfamily A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-83144786-4	chr8	83144648	83144848	+	984.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-20604.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	5.59129908027695	5.67276349157573	5.97303090776345	5.31533572683275	6.05126668776454	5.58620995750903	6.67181597350273	5.88189372630774	0.502390721791195	0.0734448023606185	0.409647915188285
Merged-chr1-44034504-3	chr1	44034402	44034602	+	777.866699	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-14496.0	NM_001013799	433294.0	Mm.123621	NM_001013799	ENSMUSG00000047343	Mettl21c	A530098C11Rik	methyltransferase like 21C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-34487981-2	chr5	34487881	34488081	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25998.0	NM_139064	231130.0	Mm.28615	NM_139064	ENSMUSG00000059866	Tnip2	1810020H16Rik|ABIN-2|AI428870	TNFAIP3 interacting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-114647470-3	chr5	114647365	114647565	+	854.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022017, intron 1 of 15)	intron (NM_022017, intron 1 of 15)	10956.0	NM_022017	63873.0	Mm.266450	NM_022017	ENSMUSG00000014158	Trpv4	0610033B08Rik|OTRPC4|Trp12|VR-OAC|VRL-2|VROAC	transient receptor potential cation channel, subfamily V, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-102193997-3	chr7	102193911	102194111	+	607.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001287167, intron 4 of 19)	B1F2|SINE|Alu	15856.0	NM_001287167	269966.0	Mm.439800	NM_022979	ENSMUSG00000063550	Nup98	4732457F17|AI849286|Nup96	nucleoporin 98	protein-coding	-1.26872622733204	-1.24139049354832	-1.25169651944416	-1.09990844973557	-1.2682932763868	-1.23915713474408	-1.24936346108299	-0.832315581531828	1.28993179094749	0.702842249764848	1
Merged-chr6-122310524-4	chr6	122310498	122310698	+	934.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010749, intron 1 of 6)	intron (NM_010749, intron 1 of 6)	1878.0	NM_010749	17113.0	Mm.249225	NM_010749	ENSMUSG00000007458	M6pr	CD-MPR|Mpr46	mannose-6-phosphate receptor, cation dependent	protein-coding	1.41403384694864	1.59444805391258	1.27311117552698	1.37445821542925	1.52370112072624	1.60711873149908	1.11534510595124	0.903281846467844	-0.358433144880542	0.772119654400958	0.998431161219273
Merged-chr17-48406806-2	chr17	48406706	48406906	+	564.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110832, intron 1 of 9)	intron (NM_001110832, intron 1 of 9)	3014.0	NM_001110832	18044.0	Mm.4929	NM_010913	ENSMUSG00000023994	Nfya	AA407810|Cbf-b|SEZ-10|SEZ10	nuclear transcription factor-Y alpha	protein-coding	1.48695044250553	1.35319197560009	0.811631083834085	1.38176783825249	1.4134834430756	0.826042781063779	1.01093742109934	1.38956852201653	-0.400524780588943	0.76984805768399	0.998431161219273
Merged-chr5-146245912-2	chr5	146245812	146246012	+	960.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153599, intron 1 of 12)	intron (NM_153599, intron 1 of 12)	14662.0	NM_153599	264064.0	Mm.260576	NM_153599	ENSMUSG00000029635	Cdk8	-	cyclin-dependent kinase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-60865359-4	chr1	60865269	60865469	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER21C|LTR|ERVL	-43656.0	NM_009843	12477.0	Mm.390	NM_009843	ENSMUSG00000026011	Ctla4	Cd152|Ctla-4|Ly-56	cytotoxic T-lymphocyte-associated protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-102149117-2	chr15	102149017	102149217	+	620.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008344, intron 3 of 3)	intron (NM_008344, intron 3 of 3)	-1458.0	NM_146064	223920.0	Mm.358862	NM_146064	ENSMUSG00000023045	Soat2	ACAT2|D15Wsu97e	sterol O-acyltransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16129687-2	chr7	16129554	16129754	+	652.900024	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_148946)	promoter-TSS (NM_148946)	-172.0	NM_001347561	110891.0	Mm.241147	NM_148946	ENSMUSG00000030376	Slc8a2	Ncx2	solute carrier family 8 (sodium/calcium exchanger), member 2	protein-coding	1.00823863745875	0.728955368212984	0.924873484708867	1.6243185621811	0.690783206180313	1.44501284972692	0.931486242961708	1.63468024858527	0.430965896141386	0.763625369450457	0.998431161219273
Merged-chr6-52965724-2	chr6	52965624	52965824	+	613.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_173406, intron 1 of 4)	intron (NM_173406, intron 1 of 4)	-56104.0	NM_001168277	231986.0	Mm.386865	NM_173406	ENSMUSG00000063568	Jazf1	AI591476|C820002C15|Jaz1|Tip27	JAZF zinc finger 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-35294525-2	chr15	35294425	35294625	+	653.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1587.0	NM_054049	107587.0	Mm.46336	NM_054049	ENSMUSG00000022330	Osr2	5430409I15Rik|Osr2A|Osr2B	odd-skipped related 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-54735031-4	chr3	54734937	54735137	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025442)	promoter-TSS (NM_025442)	327.0	NM_027148	69639.0	Mm.29253	NM_027148	ENSMUSG00000027752	Exosc8	2310032N20Rik|CIP3|mKIAA4013	exosome component 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-29670360-4	chr2	29670269	29670469	+	797.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054050, intron 1 of 23)	B3A|SINE|B2	50649.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-54412982-2	chr14	54412882	54413082	+	943.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253679, intron 2 of 10)	intron (NM_001253679, intron 2 of 10)	-3510.0	NM_001253680	20540.0	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-5242451-4	chr15	5242345	5242545	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008965, exon 2 of 3)	exon (NM_008965, exon 2 of 3)	1742.0	NM_001136079	19219.0	Mm.18509	NM_008965	ENSMUSG00000039942	Ptger4	EP4|Ptgerep4	prostaglandin E receptor 4 (subtype EP4)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-120849841-2	chr5	120849741	120849941	+	812.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_145153, intron 2 of 5)	intron (NM_145153, intron 2 of 5)	2474.0	NM_145153	243262.0	Mm.105369	NM_145153	ENSMUSG00000053765	Oas1f	-	2'-5' oligoadenylate synthetase 1F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-46378246-1	chr18	46378146	46378346	+	608.0	f0_balb.idr	Intergenic	Intergenic	-66318.0	NM_001160399	240261.0	Mm.329416	NM_001160399	ENSMUSG00000071855	Ccdc112	8430438M01Rik|AW108467	coiled-coil domain containing 112	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-106482669-7	chr3	106482539	106482739	+	856.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033207, exon 2 of 2)	non-coding (NR_033207, exon 2 of 2)	189.0	NM_001278941	72121.0	Mm.14816	NM_028110	ENSMUSG00000027901	Dennd2d	2010308M01Rik|AI451421	DENN/MADD domain containing 2D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-55527869-1	chr4	55527769	55527969	+	556.0	f1_balb.idr	3' UTR (NM_010637, exon 5 of 5)	3' UTR (NM_010637, exon 5 of 5)	4606.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	1.52084631452121	1.20613172085123	1.17418724077893	1.77744137988117	2.86911008179926	2.56648015680676	2.47540328667425	2.18952483743954	3.02473766093458	0.00353047643305957	0.0509118464469336
Merged-chr14-56055444-2	chr14	56055344	56055544	+	779.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6866.0	NM_010779	17227.0	Mm.439684	NM_010779	ENSMUSG00000061068	Mcpt4	MMCP-4|MMCP-4A|MMCP-4B|Mcp-4|Mcp4	mast cell protease 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-108341995-4	chr9	108341880	108342080	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	2900.0	NM_001329527	14775.0	Mm.1090	NM_008160	ENSMUSG00000063856	Gpx1	AI195024|AL033363|CGPx|GPx-1|GSHPx-1|Gpx	glutathione peroxidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-58596535-4	chr6	58596435	58596635	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011920)	promoter-TSS (NM_011920)	-137.0	NM_011920	26357.0	Mm.333096	NM_011920	ENSMUSG00000029802	Abcg2	ABC15|ABCP|AI428558|BCRP|Bcrp1|MXR|MXR1	ATP binding cassette subfamily G member 2 (Junior blood group)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-84370561-4	chr2	84370472	84370672	+	998.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018782, intron 6 of 15)	intron (NM_018782, intron 6 of 15)	54694.0	NM_018782	54598.0	Mm.75467	NM_018782	ENSMUSG00000059588	Calcrl	AV071593|CRLR	calcitonin receptor-like	protein-coding	4.2676278828104	3.34442928407162	3.54427488299535	3.76924988174597	4.59192043899024	3.69933747260053	4.62282148725343	4.45369525735558	0.81596367473589	0.0780860410330814	0.425337312491636
Merged-chr7-27537996-2	chr7	27537896	27538096	+	655.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001317355, intron 9 of 13)	intron (NM_001317355, intron 9 of 13)	14735.0	NM_001033315	233020.0	Mm.429716	NM_001033315	ENSMUSG00000040424	Hipk4	Gm162	homeodomain interacting protein kinase 4	protein-coding	-1.84303373260285	-1.81303463126392	-1.82210660711932	-1.82955859819738	-1.84092785115721	-1.81106869625141	-1.8200529106377	-1.54273750312762	1.50114612804783	0.670102668014672	1
Merged-chr2-26503820-4	chr2	26503737	26503937	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008714)	promoter-TSS (NM_008714)	-15.0	NM_008714	18128.0	Mm.290610	NM_008714	ENSMUSG00000026923	Notch1	9930111A19Rik|Mis6|N1|Tan1|lin-12	notch 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34174272-4	chr17	34174184	34174384	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13046.0	NM_013585	16912.0	Mm.390983	NM_013585	ENSMUSG00000096727	Psmb9	Lmp-2|Lmp2	proteasome (prosome, macropain) subunit, beta type 9 (large multifunctional peptidase 2)	protein-coding	6.06559773214023	5.09046569376373	6.25160426135444	4.92404880960843	5.03138880332003	4.84336613619436	5.65030942773072	4.78461697109309	-0.669925388418495	0.0623849206825478	0.371031532559092
Merged-chr8-88282856-4	chr8	88282760	88282960	+	982.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001109756)	promoter-TSS (NM_001109756)	-132.0	NM_001109756	11513.0	Mm.288206	NM_007406	ENSMUSG00000031659	Adcy7	AA407758	adenylate cyclase 7	protein-coding	2.98786684894929	3.01827646841461	3.4324763672607	3.86915649743051	3.99292589170489	2.56307684478675	2.93541370538634	4.1316888787875	0.312319756392191	0.616063374761793	0.977352076822579
Merged-chr12-100211233-1	chr12	100211133	100211333	+	916.0	f0_balb.idr	Intergenic	Intergenic	11089.0	NM_001313934	12313.0	Mm.285993	NM_009790	ENSMUSG00000001175	Calm1	AI256814|AI327027|AI461935|AL024000|CaM|Calm|Cam1	calmodulin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-49486930-2	chr9	49486844	49487044	+	724.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172770)	promoter-TSS (NM_172770)	-719.0	NM_172770	235330.0	Mm.177413	NM_172770	ENSMUSG00000040219	Ttc12	E330017O07Rik	tetratricopeptide repeat domain 12	protein-coding	1.44625710184304	0.4957197449485	0.486352216397256	0.811615583672978	0.888696767392627	0.497819353838368	1.112941139975	0.663380051819407	-0.364995998068735	0.825343271161585	1
Merged-chr2-164836664-5	chr2	164836677	164836877	+	839.7000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038492, intron 8 of 14)	MIRc|SINE|MIR	3004.0	NM_008906	19025.0	Mm.359633	NM_008906	ENSMUSG00000017760	Ctsa	AU019505|PPCA|Ppgb	cathepsin A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89449023-3	chr3	89448901	89449101	+	860.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_146131, exon 11 of 11)	3' UTR (NM_146131, exon 11 of 11)	-5540.0	NM_001310640	68603.0	Mm.34242	NM_026784	ENSMUSG00000027952	Pmvk	1110011E12Rik|2900002L22Rik|AV001327|PMK|PMKA|PMKASE	phosphomevalonate kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-80257024-2	chr18	80256924	80257124	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001164420, exon 2 of 5)	exon (NM_001164420, exon 2 of 5)	718.0	NM_025861	66943.0	Mm.29247	NM_025861	ENSMUSG00000034006	Pqlc1	2310009N05Rik|4933425L21Rik|5730564E11Rik|C78974	PQ loop repeat containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69949026-4	chr11	69948918	69949118	+	987.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009204)	promoter-TSS (NM_009204)	-821.0	NM_001359114	20528.0	Mm.10661	NM_009204	ENSMUSG00000018566	Slc2a4	GT2|Glut-4|Glut4|twgy	solute carrier family 2 (facilitated glucose transporter), member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-87454205-2	chr16	87454105	87454305	+	713.833313	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024258)	promoter-TSS (NM_024258)	-780.0	NM_024258	74112.0	Mm.152941	NM_024258	ENSMUSG00000025616	Usp16	1200004E02Rik|2810483I07Rik|6330514E22Rik|UBPM	ubiquitin specific peptidase 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119090234-2	chr11	119090134	119090334	+	908.1666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-3997.0	NM_007625	12418.0	Mm.268070	NM_007625	ENSMUSG00000039989	Cbx4	MPc2|PC2	chromobox 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-162933404-2	chr2	162933304	162933504	+	679.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026499, intron 2 of 5)	intron (NM_026499, intron 2 of 5)	1896.0	NM_026499	67996.0	Mm.24042	NM_026499	ENSMUSG00000016921	Srsf6	1210001E11Rik|AI314910|AW146126|Sfrs6	serine/arginine-rich splicing factor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-59465910-4	chr2	59465816	59466016	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18737.0	NM_029723	76747.0	Mm.275769	NM_029723	ENSMUSG00000026989	Dapl1	2310032F03Rik|EEDA	death associated protein-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-64287678-3	chr15	64287568	64287768	+	893.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 3 of 28)	intron (NM_001276461, intron 3 of 28)	25005.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21147882-2	chr9	21147782	21147982	+	672.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016742, intron 1 of 7)	ID_B1|SINE|B4	2024.0	NM_016742	12539.0	Mm.32331	NM_016742	ENSMUSG00000019471	Cdc37	p50|p50Cdc37	cell division cycle 37	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-101722806-3	chr13	101722737	101722937	+	674.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077495, intron 2 of 15)	intron (NM_001077495, intron 2 of 15)	-30207.0	NM_001024955	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152526436-4	chr1	152526336	152526536	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 15 of 17)	intron (NM_016846, intron 15 of 17)	98781.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-102605101-2	chr7	102605037	102605237	+	549.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_147102, exon 1 of 1)	exon (NM_147102, exon 1 of 1)	781.0	NM_147102	259106.0	Mm.377848	NM_147102	ENSMUSG00000073973	Olfr552	MOR28-1	olfactory receptor 552	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-45188109-2	chr2	45188009	45188209	+	552.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70667.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35875316-2	chr17	35875216	35875416	+	555.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_175242, exon 3 of 3)	3' UTR (NM_175242, exon 3 of 3)	-4462.0	NM_026987	69192.0	Mm.390986	NM_026987	ENSMUSG00000024422	Dhx16	2410006N22Rik|DBP2|Ddx16|mKIAA0577	DEAH (Asp-Glu-Ala-His) box polypeptide 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-128798903-4	chr6	128798825	128799025	+	997.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-10284.0	NM_008527	17059.0	Mm.480764	NM_008527	ENSMUSG00000030325	Klrb1c	AI462337|CD161|Klrb1b|Ly-59|Ly55c|Ly59|NK-RP1|NK1.1|NKR-P1.9|NKRP1|NKRP140|Nk-1|Nk-1.2|Nk1|Nk1.2|Nkrp1b|Nkrp1c|ly-55c	killer cell lectin-like receptor subfamily B member 1C	protein-coding	4.91832340555249	4.8455892839803	4.07402442064843	4.73626789571768	4.18002839373339	3.54115800117749	3.41416228043714	4.47327489507189	-0.903978653405929	0.038416091534708	0.279117642046887
Merged-chr4-40139562-2	chr4	40139462	40139662	+	552.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3703.0	NM_007386	11428.0	Mm.331547	NM_007386	ENSMUSG00000028405	Aco1	Aco-1|Irebp|Irp1	aconitase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-21916110-1	chr3	21916010	21916210	+	544.0	f0_balb.idr	Intergenic	Intergenic	-160542.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35812675-2	chr17	35812575	35812775	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9038.0	NM_133662	15937.0	Mm.25613	NM_133662	ENSMUSG00000003541	Ier3	AI663993|IEX-1|cI-3|gly96	immediate early response 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-103215322-4	chr4	103215205	103215405	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356276)	promoter-TSS (NM_001356276)	-129.0	NM_177732	242585.0	Mm.281800	NM_177732	ENSMUSG00000028521	Slc35d1	AI834976|C330011J09|UGTREL7|mKIAA0260	solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-41635866-2	chr13	41635766	41635966	+	817.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001163572, exon 3 of 3)	3' UTR (NM_001163572, exon 3 of 3)	29650.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-49978662-4	chr18	49978537	49978737	+	864.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177760)	promoter-TSS (NM_001177760)	-790.0	NM_001177760	106869.0	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	-0.196732209039094	0.715018622582247	-0.184008586628164	-0.188766222650032	0.524388304638573	-0.176512386927059	-0.18265398868575	-0.187932902986228	-0.493672182276818	0.841124168326597	1
Merged-chr5-64210917-4	chr5	64210778	64210978	+	986.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019636, intron 2 of 19)	RSINE1|SINE|B4	-19479.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-95855683-2	chr11	95855583	95855783	+	714.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-3134.0	NR_045187	73906.0	Mm.399894	NR_045187	ENSMUSG00000086015	4833417C18Rik	-	RIKEN cDNA 4833417C18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180720531-3	chr1	180720431	180720631	+	873.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5512.0	NM_133225	170760.0	Mm.272981	NM_133225	ENSMUSG00000026499	Acbd3	60kDa|8430407O11Rik|D1Ertd10e|GCP60|GOLPH1|Gocap1|Pap7	acyl-Coenzyme A binding domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-116634612-2	chr6	116634512	116634712	+	710.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_178045, exon 11 of 11)	3' UTR (NM_178045, exon 11 of 11)	-5613.0	NM_026057	67255.0	Mm.18810	NM_026057	ENSMUSG00000059878	Zfp422	2900028O21Rik|AU041373|KOX15|Krox-25-2|Krox-26|Krox25|Krox26|Znf22	zinc finger protein 422	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5068119-3	chr19	5068011	5068211	+	847.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_054042)	promoter-TSS (NM_054042)	33.0	NM_054042	70445.0	Mm.29597	NM_054042	ENSMUSG00000056481	Cd248	2610111G01Rik|AI842296|Cd164l1|Tem1	CD248 antigen, endosialin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120795092-2	chr11	120794992	120795192	+	686.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026824, intron 2 of 13)	intron (NM_026824, intron 2 of 13)	1303.0	NM_026824	68730.0	Mm.180622	NM_026824	ENSMUSG00000025155	Dus1l	1110032N12Rik	dihydrouridine synthase 1-like (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-105721259-2	chr3	105721140	105721340	+	922.1666869999999	f1_balb.idr|f1_c57bl6.idr	TTS (NM_175398)	TTS (NM_175398)	15782.0	NM_001163356	109050.0	Mm.212591	NM_175398	ENSMUSG00000048458	Fam212b	6530418L21Rik|inka2	family with sequence similarity 212, member B	protein-coding	1.63941512348989	2.20114208327449	1.05610098111202	2.37121386132311	1.52649599073564	1.86507906055453	1.06087165878835	1.60421170215811	-1.10659269472672	0.340995357497836	0.841823518366058
Merged-chr3-153902995-4	chr3	153902902	153903102	+	798.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031870, intron 1 of 19)	RMER16_Mm|LTR|ERVK	1889.0	NM_001282054	55993.0	Mm.272226	NM_031870	ENSMUSG00000005493	Msh4	4930485C04Rik|AV144863|mMsh4	mutS homolog 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27018034-4	chr17	27017959	27018159	+	784.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001251881)	promoter-TSS (NM_001251881)	24.0	NM_001251881	70772.0	Mm.440437	NM_027544	ENSMUSG00000048731	Ggnbp1	0610031G08Rik|mdf	gametogenetin binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-94371634-4	chr16	94371491	94371691	+	855.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019543)	promoter-TSS (NM_019543)	-576.0	NM_001159617	56176.0	Mm.474449	NM_019543	ENSMUSG00000022940	Pigp	Dcrc|Dscr5	phosphatidylinositol glycan anchor biosynthesis, class P	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-102317772-10	chr11	102317707	102317907	+	941.7333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001044383)	promoter-TSS (NM_001044383)	-520.0	NM_001044383	21429.0	Mm.2845	NM_011551	ENSMUSG00000020923	Ubtf	A930005G04Rik|NOR-90|Tcfubf|UBF|UBF-1|UBF1	upstream binding transcription factor, RNA polymerase I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-74295693-4	chr1	74295597	74295797	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027154, intron 1 of 11)	intron (NM_027154, intron 1 of 11)	8639.0	NM_027154	69660.0	Mm.261182	NM_027154	ENSMUSG00000006301	Tmbim1	2310061B02Rik|AA960455|AU024746|C78899|RECS1|Tmbib1|mKIAA4161	transmembrane BAX inhibitor motif containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-53462435-2	chr3	53462335	53462535	+	813.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_172501, exon 2 of 7)	exon (NM_172501, exon 2 of 7)	823.0	NM_172501	212114.0	Mm.85744	NM_172501	ENSMUSG00000042997	Nhlrc3	4833441N19|8030451K01Rik|mKIAA4083	NHL repeat containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30492951-4	chr7	30492897	30493097	+	763.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019546)	promoter-TSS (NM_019546)	-661.0	NM_019546	56189.0	Mm.270525	NM_019546	ENSMUSG00000036892	Prodh2	2510028N04Rik|2510038B11Rik|HYPDH|MmPOX|MmPOX1|POX1	proline dehydrogenase (oxidase) 2	protein-coding	1.72956049592783	1.13767948656776	1.36012190082191	1.08980696329121	2.2383725131234	2.53079318713411	2.03167624612913	2.36023296703467	2.83009615575507	0.0104622647072911	0.112545952144124
Merged-chr11-62808162-4	chr11	62808055	62808255	+	874.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12098.0	NM_053169	94092.0	Mm.117087	NM_053169	ENSMUSG00000047821	Trim16	9130006M08Rik|AI482483|EBBP	tripartite motif-containing 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167053278-2	chr2	167053178	167053378	+	566.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033196, intron 3 of 13)	intron (NM_001033196, intron 3 of 13)	-9656.0	NR_138563	68949.0	Mm.391959	NM_001081005		Zfas1	1500012F01Rik|Zfos1	zinc finger, NFX1-type containing 1, antisense RNA 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120259701-2	chr11	120259601	120259801	+	632.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198423, intron 3 of 27)	intron (NM_198423, intron 3 of 27)	26754.0	NM_198423	268515.0	Mm.309498	NM_198423	ENSMUSG00000039741	Bahcc1	B930044J06|BC060615	BAH domain and coiled-coil containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-108766298-1	chr12	108766198	108766398	+	1000.0	f0_c57.idr	Intergenic	Intergenic	-27013.0	NM_009537	22632.0	Mm.3868	NM_009537	ENSMUSG00000021264	Yy1	AW488674|NF-E1	YY1 transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-12656012-4	chr17	12655913	12656113	+	817.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009202, intron 8 of 10)	ORR1E|LTR|ERVL-MaLR	19825.0	NM_009202	20517.0	Mm.594	NM_009202	ENSMUSG00000023829	Slc22a1	Lx1|Oct1|Orct|Orct1	solute carrier family 22 (organic cation transporter), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-34538349-4	chr18	34538244	34538444	+	996.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3984.0	NM_009290	20890.0	Mm.558	NM_009290	ENSMUSG00000012282	Wnt8a	Stra11|Wnt-8A|Wnt-8D|Wnt8d	wingless-type MMTV integration site family, member 8A	protein-coding	-1.8429182434137	-1.8129848525291	-1.82203695700074	-1.54461076807193	-1.84081697472045	-1.81102322372834	-1.81998775896484	-1.82814164409203	-1.43114970378833	0.684630132144154	1
Merged-chr13-74463290-4	chr13	74463162	74463362	+	976.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30688.0	NM_146231	235956.0		NM_146231	ENSMUSG00000069208	Zfp825	-	zinc finger protein 825	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-40569265-4	chr12	40569165	40569365	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	123212.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-57624693-2	chr9	57624593	57624793	+	684.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3919.0	NM_199222	235416.0	Mm.295630	NM_199222	ENSMUSG00000056271	Lman1l	BC020188|slamp	lectin, mannose-binding 1 like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59795886-4	chr15	59795791	59795991	+	876.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045076)	promoter-TSS (NR_045076)	-932.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	0.829012790964291	1.08577010915829	0.693416462386092	1.14734784787302	1.53365293397246	1.09442580162245	0.695781923716577	1.37395727703213	1.22418431989899	0.397845505225301	0.884062916105661
Merged-chr12-52228919-1	chr12	52228819	52229019	+	569.333313	f1_c57bl6.idr	intron (NM_029760, intron 6 of 10)	intron (NM_029760, intron 6 of 10)	131173.0	NM_029760	76826.0	Mm.244781	NM_029760	ENSMUSG00000035142	Nubpl	2410170E07Rik	nucleotide binding protein-like	protein-coding	1.59455710270988	2.11185596530139	1.4302555263895	0.675647412974601	0.65548538443784	0.7107826342946	1.44452200012431	0.678088904417647	-2.34774597082062	0.123904323028813	0.551658122846446
Merged-chr9-123479360-2	chr9	123479260	123479460	+	596.666626	f1_balb.idr|f1_c57bl6.idr	exon (NM_013860, exon 1 of 8)	exon (NM_013860, exon 1 of 8)	659.0	NM_013860	29806.0	Mm.10987	NM_013860	ENSMUSG00000025239	Limd1	AW822033|D9Ertd192e	LIM domains containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-10609674-1	chr18	10609574	10609774	+	1000.0	f0_balb.idr	intron (NM_001081222, intron 1 of 10)	CpG	678.0	NM_001081222	77805.0	Mm.210996	NM_144542	ENSMUSG00000024293	Esco1	A930014I12Rik	establishment of sister chromatid cohesion N-acetyltransferase 1	protein-coding	3.77365837165183	4.01856984171973	3.95472485850855	2.65648466453692	4.01516638207965	4.60403526852452	4.1090069848012	3.40313446844395	0.557726535198036	0.287400263227273	0.792939220803499
Merged-chr15-77798152-4	chr15	77798032	77798232	+	999.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022410, intron 3 of 40)	intron (NM_022410, intron 3 of 40)	-41122.0	NM_001357895	239552.0	Mm.125650	NM_001081970	ENSMUSG00000056656	Apol8	9830006J20Rik|APOL-II|Apol2	apolipoprotein L 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-54127091-1	chr11	54126991	54127191	+	548.0	f0_balb.idr	intron (NM_011031, intron 13 of 15)	intron (NM_011031, intron 13 of 15)	26167.0	NM_011031	18452.0	Mm.3705	NM_011031	ENSMUSG00000018906	P4ha2	AA407196|C76437|P4hl	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-41869644-2	chr7	41869544	41869744	+	620.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001105055, intron 1 of 5)	Lx|LINE|L1	3026.0	NM_001105055	628422.0	Mm.469902	NM_001105055	ENSMUSG00000090383	Vmn2r58	EG628422	vomeronasal 2, receptor 58	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25794957-4	chr7	25794852	25795052	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6219.0	NM_001190975	26362.0	Mm.4128	NM_009465	ENSMUSG00000002602	Axl	AI323647|Ark|Tyro7|Ufo	AXL receptor tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-46882786-4	chr14	46882699	46882899	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028966)	promoter-TSS (NM_028966)	-166.0	NM_028966	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-44457344-4	chr10	44457218	44457418	+	986.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007548, intron 1 of 6)	intron (NM_007548, intron 1 of 6)	1430.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118166409-2	chr11	118166309	118166509	+	814.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001112700, intron 12 of 12)	intron (NM_001112700, intron 12 of 12)	-37190.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-86381199-4	chr1	86381096	86381296	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6945.0	NM_010341	14767.0	Mm.389159	NM_010341	ENSMUSG00000026237	Nmur1	FM-3|Gpr66|NMU-R1|NMU1R|NmU-R	neuromedin U receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-47122240-3	chr7	47122137	47122337	+	945.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013643, intron 1 of 13)	intron (NM_013643, intron 1 of 13)	10361.0	NM_001163565	19259.0	Mm.4654	NM_013643	ENSMUSG00000030854	Ptpn5	Step	protein tyrosine phosphatase, non-receptor type 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129594381-1	chr2	129594281	129594481	+	1000.0	f0_balb.idr	intron (NM_001291022, intron 1 of 4)	intron (NM_001291022, intron 1 of 4)	-1081.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	2.60247291646968	3.24483064673236	1.55034171539212	3.53596262345388	3.2072629611633	3.65478284046474	2.28082541949874	2.76566595529128	0.241092679637175	0.75781203161978	0.998431161219273
Merged-chr7-19675193-2	chr7	19675093	19675293	+	758.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001309799, intron 1 of 3)	(TTCA)n|Simple_repeat|Simple_repeat	-1273.0	NM_001309795	11813.0	Mm.28394	NM_001277944	ENSMUSG00000002992	Apoc2	apo-CII|apoC-II	apolipoprotein C-II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-72817858-4	chr5	72817737	72817937	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013689, intron 3 of 17)	intron (NM_013689, intron 3 of 17)	50611.0	NM_001113461	21682.0	Mm.319581	NM_013689	ENSMUSG00000029217	Tec	-	tec protein tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-104376945-4	chr8	104376803	104377003	+	833.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153582, intron 1 of 3)	L1MC|LINE|L1	18904.0	NM_153582	97487.0	Mm.29658	NM_153582	ENSMUSG00000096188	Cmtm4	Cklfsf4|D19397|Gm9853	CKLF-like MARVEL transmembrane domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-117728498-4	chr12	117728404	117728604	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175930, intron 20 of 27)	intron (NM_175930, intron 20 of 27)	-115357.0	NM_146040	217946.0	Mm.281149	NM_146040	ENSMUSG00000021175	Cdca7l	BC006933|JPO2	cell division cycle associated 7 like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-63775425-2	chr9	63775325	63775525	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17431.0	NM_016769	17127.0	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-172352582-4	chr1	172352472	172352672	+	934.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039484, intron 1 of 1)	intron (NM_001039484, intron 1 of 1)	11362.0	NM_001039484	16513.0	Mm.254563	NM_020269	ENSMUSG00000044708	Kcnj10	BIR10|BIRK-1|Kir1.2|Kir4.1	potassium inwardly-rectifying channel, subfamily J, member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-156306030-3	chr2	156305927	156306127	+	700.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172674, intron 17 of 17)	B2_Mm2|SINE|B2	-6446.0	NM_027585	70873.0	Mm.475234	NM_027585	ENSMUSG00000038085	Cnbd2	4921517L17Rik|5430421B09Rik|Cris	cyclic nucleotide binding domain containing 2	protein-coding	0.00720325830884855	-0.418961923520245	-0.120248800028184	-0.424968547325859	-0.0754789368537887	-0.418192950454723	-0.421612774977877	-0.424513837624914	-1.06140600571653	0.683277466257509	1
Merged-chr1-64543973-2	chr1	64543873	64544073	+	763.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037726, intron 1 of 6)	B2_Mm2|SINE|B2	11169.0	NM_001037726	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-21812352-4	chr13	21812234	21812434	+	914.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_175657)	TTS (NM_175657)	550.0	NM_175657	319161.0	Mm.261664	NM_175657	ENSMUSG00000069305	Hist1h4n	-	histone cluster 1, H4n	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-58324225-2	chr10	58324125	58324325	+	580.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026148, intron 1 of 9)	Charlie1|DNA|hAT-Charlie	678.0	NM_026148	110829.0	Mm.57734	NM_026148	ENSMUSG00000019920	Lims1	2310016J22Rik|4921524A02Rik|AI507642|AU021743|AW551584|C430041B13Rik|Lims1l|PINCH|PINCH1	LIM and senescent cell antigen-like domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-55204889-3	chr11	55204757	55204957	+	868.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153139, intron 1 of 10)	intron (NM_153139, intron 1 of 10)	517.0	NM_153139	215335.0	Mm.35732	NM_153139	ENSMUSG00000020261	Slc36a1	5830411H19Rik|AI839897|Pat1	solute carrier family 36 (proton/amino acid symporter), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-147340455-2	chr4	147340355	147340555	+	779.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039209, intron 1 of 2)	B3|SINE|B2	164589.0	NM_001039209	195531.0	Mm.270762	NM_001039209	ENSMUSG00000078496	Zfp982	Gm13152	zinc finger protein 982	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-87030542-2	chr11	87030442	87030642	+	768.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR30D2_MM|LTR|ERV1	-36780.0	NM_001005341	77864.0	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-73624900-2	chr15	73624800	73625000	+	793.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033219)	promoter-TSS (NM_001033219)	-156.0	NM_001033219	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-142094436-5	chr7	142094385	142094585	+	860.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008748, intron 1 of 6)	CpG	799.0	NM_008748	18218.0	Mm.39725	NM_008748	ENSMUSG00000037887	Dusp8	5530400B01Rik|AI593498|Nttp1	dual specificity phosphatase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46649879-2	chr19	46649751	46649951	+	958.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177813, intron 2 of 3)	intron (NM_001177813, intron 2 of 3)	23149.0	NM_007809	13074.0	Mm.1262	NM_007809	ENSMUSG00000003555	Cyp17a1	Cyp17|p450c17	cytochrome P450, family 17, subfamily a, polypeptide 1	protein-coding	0.983762081566788	0.413191974820278	0.400288373812238	0.784243252227311	1.91291697279877	0.416058841509247	0.403161051527467	0.790291341026564	1.61206549696249	0.34256027467263	0.843489544525844
Merged-chr8-34066112-3	chr8	34065957	34066157	+	848.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41757.0	NM_001293758	22428.0	Mm.150373	NM_011722	ENSMUSG00000031516	Dctn6	AU044699|WS-3|p27	dynactin 6	protein-coding	-0.778047400830726	-0.899388325918845	-0.906628590570071	-0.908568608772561	-0.552013603193575	-0.896875237439394	-0.906072351344798	-0.618317437363368	1.89319603140518	0.51387425451653	1
Merged-chr5-31526966-6	chr5	31526822	31527022	+	888.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009206)	promoter-TSS (NM_009206)	-73.0	NM_001359154	20534.0	Mm.352407	NM_009206	ENSMUSG00000029141	Slc4a1ap	kanadaptin	solute carrier family 4 (anion exchanger), member 1, adaptor protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-187586780-1	chr1	187586680	187586880	+	660.0	f0_c57.idr	Intergenic	Intergenic	-22226.0	NM_001243792	26381.0	Mm.89989	NM_011935	ENSMUSG00000026610	Esrrg	ERR3|Errg|NR3B3|mKIAA0832	estrogen-related receptor gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-8904370-2	chr12	8904270	8904470	+	579.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-16937.0	NM_008640	17775.0	Mm.30071	NM_008640	ENSMUSG00000020585	Laptm4a	AA286466|LAPTM4|MTP|Mtrp|mKIAA0108	lysosomal-associated protein transmembrane 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-29510867-2	chr17	29510767	29510967	+	822.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19822.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-20610724-4	chr16	20610625	20610825	+	954.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177940)	promoter-TSS (NM_177940)	36.0	NM_001357404	208624.0	Mm.24950	NM_145939	ENSMUSG00000033809	Alg3	D16Ertd36e|not	asparagine-linked glycosylation 3 (alpha-1,3-mannosyltransferase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-94444551-2	chr11	94444451	94444651	+	769.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009783, intron 9 of 35)	intron (NM_009783, intron 9 of 35)	29647.0	NM_001177888	12291.0	Mm.29585	NM_009783	ENSMUSG00000020866	Cacna1g	Cav3.1d|[a]1G|a1G|alpha-1G|mKIAA1123	calcium channel, voltage-dependent, T type, alpha 1G subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-45526524-3	chr5	45526423	45526623	+	790.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_025895, exon 4 of 4)	3' UTR (NM_025895, exon 4 of 4)	6294.0	NM_025895	66999.0	Mm.283045	NM_025895	ENSMUSG00000015804	Med28	1500003D12Rik|AI451633|AU045690|Eg1|FKSG20|magicin	mediator complex subunit 28	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-86430221-4	chr1	86430124	86430324	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3895.0	NM_027966	71863.0	Mm.179627	NM_027966	ENSMUSG00000036574	Tex44	1700019O17Rik	testis expressed 44	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167957967-2	chr2	167957867	167958067	+	978.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011201, intron 1 of 8)	intron (NM_011201, intron 1 of 8)	25640.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107904908-4	chr9	107904777	107904977	+	988.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2012.0	NR_109782	19882.0	Mm.3901	NM_009074	ENSMUSG00000032584	Mst1r	CD136|CDw136|Fv-2|Fv2|PTK8|Ron|STK	macrophage stimulating 1 receptor (c-met-related tyrosine kinase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-41187476-3	chr5	41187375	41187575	+	846.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	520216.0	NM_001310592	100972.0	Mm.41555	NM_027295	ENSMUSG00000029128	Rab28	2700023P08Rik|AW496496	RAB28, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-108287639-2	chr10	108287539	108287739	+	895.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-44550.0	NM_054056	114774.0	Mm.391419	NM_054056	ENSMUSG00000035873	Pawr	2310001G03Rik|PAR4|Par-4	PRKC, apoptosis, WT1, regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111436007-2	chr12	111435907	111436107	+	948.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-6654.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84594655-2	chr8	84594555	84594755	+	826.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252060, intron 31 of 47)	intron (NM_001252060, intron 31 of 47)	68197.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	1.92164233037598	1.30866974686322	1.27343253621145	2.48719348348288	2.68528156780763	2.01972656672368	2.48220494741094	3.0173937954134	1.68879996321465	0.0824127288413459	0.439331125876097
Merged-chr4-145197758-2	chr4	145197659	145197859	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(GA)n|Simple_repeat|Simple_repeat	-2754.0	NM_001276465	230895.0	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-32682571-4	chr11	32682505	32682705	+	812.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271347, intron 2 of 12)	intron (NM_001271347, intron 2 of 12)	40050.0	NM_001271347	103583.0	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-168119322-2	chr2	168119222	168119422	+	822.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35191.0	NR_040327	77017.0	Mm.407822	NR_040327	ENSMUSG00000087648	E130018N17Rik	-	RIKEN cDNA E130018N17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-25151887-4	chr9	25151774	25151974	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020586)	promoter-TSS (NM_020586)	-93.0	NM_020586	80517.0	Mm.142843	NM_020586	ENSMUSG00000008429	Herpud2	5031400M07Rik|AB041580	HERPUD family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-97431469-4	chr16	97431365	97431565	+	868.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019517, intron 8 of 8)	ID_B1|SINE|B4	31440.0	NM_010846	17857.0	Mm.33996	NM_010846	ENSMUSG00000000386	Mx1	AI893580|Mx|Mx-1	MX dynamin-like GTPase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-106908915-3	chr9	106908829	106909029	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153413, intron 46 of 52)	intron (NM_153413, intron 46 of 52)	-16991.0	NM_029103	74840.0	Mm.29778	NM_029103	ENSMUSG00000032575	Manf	3230402M22Rik|AA407711|AA408789|AA673178|Armet|D17914|D18Mgi17	mesencephalic astrocyte-derived neurotrophic factor	protein-coding	5.65677308787618	5.03503812497417	5.22666523333107	5.84161880347453	4.10725323960364	2.78624447024881	2.84912037150269	4.31558364322457	-2.17852589596788	5.72174099636963e-07	4.08627669490731e-05
Merged-chr1-139462784-2	chr1	139462684	139462884	+	565.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009791, intron 5 of 27)	intron (NM_009791, intron 5 of 27)	8011.0	NM_009791	12316.0	Mm.168523	NM_009791	ENSMUSG00000033952	Aspm	Calmbp1|D330028K02Rik|MCPH5|Sha1	abnormal spindle microtubule assembly	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-9238999-4	chr9	9238902	9239102	+	954.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027823)	promoter-TSS (NM_027823)	11.0	NM_027823	71544.0	Mm.334955	NM_027823	ENSMUSG00000050730	Arhgap42	9030420J04Rik|BE136619	Rho GTPase activating protein 42	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3780841-4	chr12	3780732	3780932	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007886, intron 18 of 18)	intron (NM_007886, intron 18 of 18)	-26148.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-9707203-4	chr10	9707058	9707258	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22436.0	NR_038036	620417.0	Mm.378085	NR_038036	ENSMUSG00000111901	Gm6150	-	predicted gene 6150	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-110720952-2	chr8	110720852	110721052	+	873.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198625)	promoter-TSS (NM_198625)	-524.0	NM_198625	244654.0	Mm.490385	NM_198625	ENSMUSG00000033763	Mtss1l	ABBA	metastasis suppressor 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-37622806-4	chr13	37622677	37622877	+	897.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-203261.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-77422689-2	chr8	77422589	77422789	+	819.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030113, intron 5 of 22)	intron (NM_030113, intron 5 of 22)	-94367.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-117243068-1	chr4	117242968	117243168	+	616.0	f1_balb.idr	intron (NM_001145637, intron 1 of 12)	intron (NM_001145637, intron 1 of 12)	8849.0	NM_001145637	381544.0	Mm.23504	NM_001033774	ENSMUSG00000060268	Armh1	1700012C08Rik|Gm1661|Gm1662|Ncrna00082	armadillo-like helical domain containing 1	protein-coding	-1.5081512200108	-1.16747411261397	-1.48555311441572	-1.49360012887111	-1.35277997577344	-1.47363385318999	-1.48333543526107	-1.49215971713098	-0.845322528307886	0.808204946884173	1
Merged-chr8-53562002-2	chr8	53561902	53562102	+	747.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	50300.0	NM_001005847	11593.0	Mm.334535	NM_001005847	ENSMUSG00000031521	Aga	AW060726	aspartylglucosaminidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-117385508-4	chr12	117385405	117385605	+	958.2333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48493.0	NR_044987	432713.0	Mm.459210	NR_044987	ENSMUSG00000101930	Gm5441	-	predicted gene 5441	ncRNA	1.4922536339089	2.32407079604594	0.767350665794256	0.48726858530231	0.464766745835633	1.23230615202035	0.50685152348734	0.489976762765382	-2.76560472975604	0.084029954694958	0.444659539736889
Merged-chr1-134332113-2	chr1	134332013	134332213	+	717.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001144855, intron 1 of 28)	intron (NM_001144855, intron 1 of 28)	815.0	NM_001144855	68507.0	Mm.295105	NM_001144855	ENSMUSG00000026458	Ppfia4	100042382|1110008G13Rik|AI448359|AI852265|C81506|Gm3812	protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127025357-4	chr7	127025258	127025458	+	997.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010772, exon 2 of 5)	exon (NM_010772, exon 2 of 5)	1121.0	NM_010772	17188.0	Mm.378964	NM_010772	ENSMUSG00000030678	Maz	MAZI|PUR1|Pur-1|SAF-1|SAF-2	MYC-associated zinc finger protein (purine-binding transcription factor)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30108293-1	chr2	30108193	30108393	+	544.0	f1_c57bl6.idr	exon (NM_001290503, exon 6 of 16)	exon (NM_001290503, exon 6 of 16)	-14658.0	NM_001037762	66220.0	Mm.22538	NM_025428	ENSMUSG00000015335	Zdhhc12	1190004A01Rik	zinc finger, DHHC domain containing 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-66427527-3	chr7	66427403	66427603	+	673.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053080)	promoter-TSS (NM_053080)	-26.0	NM_053080	56847.0	Mm.140988	NM_053080	ENSMUSG00000015134	Aldh1a3	ALDH6|RALDH3|V1	aldehyde dehydrogenase family 1, subfamily A3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-37307422-3	chr19	37307319	37307519	+	621.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031156, intron 10 of 23)	intron (NM_031156, intron 10 of 23)	23194.0	NM_031156	15925.0	Mm.28366	NM_031156	ENSMUSG00000056999	Ide	1300012G03Rik|4833415K22Rik|AA675336|AI507533	insulin degrading enzyme	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191280899-4	chr1	191280810	191281010	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37208.0	NM_025424	66208.0	Mm.46444	NM_025424	ENSMUSG00000037499	Nenf	1110060M21Rik|SCIRP10|Spuf	neuron derived neurotrophic factor	protein-coding	5.89195930494915	5.73627765244098	6.3885812199845	5.32117307423312	6.07235396718185	6.07291022654013	6.17358731664737	5.5936039044502	0.118937270132104	0.660886380444279	0.990834071047625
Merged-chr12-100277758-4	chr12	100277666	100277866	+	907.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045741, intron 1 of 3)	intron (NR_045741, intron 1 of 3)	1157.0	NR_045741	100038713.0	Mm.470751	NR_045741	ENSMUSG00000113679	Gm10432	-	predicted gene 10432	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-43473079-2	chr15	43472979	43473179	+	775.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_046064, intron 1 of 2)	ORR1C1|LTR|ERVL-MaLR	3957.0	NR_046064	100038728.0	Mm.244168	NR_046064	ENSMUSG00000072592	Gm10373	-	predicted gene 10373	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-53818185-2	chr6	53818085	53818285	+	796.833374	f1_balb.idr|f1_c57bl6.idr	exon (NM_025817, exon 1 of 1)	exon (NM_025817, exon 1 of 1)	2640.0	NM_025817	66873.0	Mm.422727	NM_025817	ENSMUSG00000043496	Tril	1200009O22Rik|AI316813|mKIAA0644	TLR4 interactor with leucine-rich repeats	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-39201518-2	chr18	39201418	39201618	+	583.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361073, intron 11 of 21)	intron (NM_001361073, intron 11 of 21)	208373.0	NM_175164	71302.0	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-90225318-4	chr15	90225156	90225356	+	746.799988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_106106)	TTS (NR_106106)	896.0	NR_106106	102466838.0		NR_106106	ENSMUSG00000099319	Mir7648	Gm27736|mmu-mir-7648	microRNA 7648	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-5446256-2	chr11	5446156	5446356	+	604.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-1409.0	NM_001080924	407821.0	Mm.216313	NM_001080924	ENSMUSG00000041961	Znrf3	Gm1167	zinc and ring finger 3	protein-coding	0.000806533479048917	0.458115544267359	0.0419215982740951	-0.126430250326081	0.00464376445083972	0.0662961323820375	0.0463161101837445	-0.125856412791589	-1.07278418313694	0.593231618796791	1
Merged-chr3-108289138-2	chr3	108289038	108289238	+	551.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019972, intron 1 of 19)	intron (NM_019972, intron 1 of 19)	5074.0	NM_019972	20661.0	Mm.157119	NM_019972	ENSMUSG00000068747	Sort1	2900053A11Rik|AI852375|Ntr3|Ntsr3	sortilin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97469330-2	chr6	97469227	97469427	+	991.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	-10041.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	-0.108280664443904	-0.241843303505458	0.535183322931313	-0.250588680968892	-0.255986628422124	-0.240732658946208	0.231930243356309	-0.249922217479186	-1.14311127283354	0.634336272010613	1
Merged-chr13-55437406-4	chr13	55437314	55437514	+	837.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPEY5_I-int|LTR|ERVK	-7658.0	NM_001286063	26385.0	Mm.10193	NM_011938	ENSMUSG00000074886	Grk6	Gprk6	G protein-coupled receptor kinase 6	protein-coding	-0.25293145420185	-0.240234272314466	-0.244408334623182	0.264746382516541	0.008249558203667	-0.239291454513468	-0.243488910723481	0.271442215852642	0.538870606123217	0.825510827421101	1
Merged-chr4-40233478-3	chr4	40233374	40233574	+	716.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172689, intron 2 of 17)	BGLII|LTR|ERVK	6351.0	NM_172689	230073.0	Mm.86382	NM_172689	ENSMUSG00000040296	Ddx58	6430573D20Rik|C330021E21|RIG-I|RLR-1	DEAD (Asp-Glu-Ala-Asp) box polypeptide 58	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115153955-5	chr11	115153706	115153906	+	929.342834	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021411)	promoter-TSS (NM_021411)	-372.0	NM_021411	58222.0	Mm.143789	NM_021411	ENSMUSG00000020732	Rab37	B230331O03Rik|B230354I04Rik	RAB37, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56607548-2	chr17	56607448	56607648	+	643.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_153152)	TTS (NM_153152)	2223.0	NM_153152	224904.0	Mm.34002	NM_153152	ENSMUSG00000049760	2410015M20Rik	Mic13|QIL1|sr104	RIKEN cDNA 2410015M20 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129258975-4	chr2	129258884	129259084	+	664.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38228.0	NM_181589	70466.0	Mm.45785	NM_181589	ENSMUSG00000048327	Ckap2l	2010016H04Rik|2610318C08Rik|AV070319|radmis|rdm	cytoskeleton associated protein 2-like	protein-coding	0.769366219136932	2.4643232006913	1.60136084918127	1.23734449231968	0.774046054276925	0.844813677957157	1.97370612546173	1.41199355507557	-0.948788948280482	0.485185672197718	0.931753689758342
Merged-chr2-157480346-2	chr2	157480246	157480446	+	789.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56053.0	NM_001025395	20779.0	Mm.22845	NM_009271	ENSMUSG00000027646	Src	AW259666|pp60c-src	Rous sarcoma oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118289275-2	chr11	118289175	118289375	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033528, intron 1 of 20)	intron (NM_001033528, intron 1 of 20)	969.0	NM_001033528	72344.0	Mm.232293	NM_001033528	ENSMUSG00000033909	Usp36	2700002L06Rik|mKIAA1453	ubiquitin specific peptidase 36	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-158379922-4	chr2	158379818	158380018	+	881.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175692, intron 3 of 4)	B2_Mm2|SINE|B2	4280.0	NM_175692	319317.0	Mm.294494	NM_175692	ENSMUSG00000044349	Snhg11	A930034L06Rik|AI854265|AL022637|AW319638|E130013N09Rik	small nucleolar RNA host gene 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-23974259-4	chr11	23974162	23974362	+	832.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	HAL1|LINE|L1	-78992.0	NM_172555	216578.0	Mm.470599	NM_172555	ENSMUSG00000020273	Papolg	9630006B20Rik	poly(A) polymerase gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131463979-2	chr1	131463879	131464079	+	655.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081011, intron 2 of 22)	ID_B1|SINE|B4	63382.0	NM_001081011	14270.0	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-8839028-2	chr5	8838928	8839128	+	602.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011075, intron 21 of 27)	intron (NM_011075, intron 21 of 27)	-40505.0	NR_152132	330031.0	Mm.389059	NR_152132		Gm5106	A230021K14|EG330031	predicted gene 5106	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84838507-2	chr8	84838407	84838607	+	924.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_001297607, exon 3 of 9)	exon (NM_001297607, exon 3 of 9)	2158.0	NM_001297607	19358.0	Mm.255539	NM_009010	ENSMUSG00000003813	Rad23a	2310040P19Rik|AL024030|HR23A|mHR23A	RAD23 homolog A, nucleotide excision repair protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133368516-2	chr4	133368416	133368616	+	707.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID|SINE|ID	-1219.0	NM_016981	20544.0	Mm.4312	NM_016981	ENSMUSG00000028854	Slc9a1	AW554487|Apnh|Mir5122|Nhe1|mir-5122|swe	solute carrier family 9 (sodium/hydrogen exchanger), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-55055532-4	chr1	55055477	55055677	+	905.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026424, intron 1 of 3)	intron (NM_026424, intron 1 of 3)	2807.0	NM_001039710	67876.0	Mm.281019	NM_026424	ENSMUSG00000025981	Coq10b	1500041J02Rik|1700030I21Rik|9530077A17Rik|AV002237|AW742641	coenzyme Q10B	protein-coding	4.51910713771999	5.12691091105466	4.91855950296659	4.05778392730107	3.34558173366272	2.59713037647648	2.4895527854743	2.39161892365099	-2.72734849714607	3.66188997836063e-07	2.76903503951917e-05
Merged-chr10-20076960-4	chr10	20076850	20077050	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008580, intron 12 of 29)	intron (NM_008580, intron 12 of 29)	-71970.0	NM_008635	17761.0	Mm.20928	NM_008635	ENSMUSG00000019996	Map7	E-MAP-115|MAP-7|Mtap7|R75000|mshi|mste|ste	microtubule-associated protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-5455318-2	chr13	5455218	5455418	+	637.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MMERVK10C-int|LTR|ERVK	402774.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-122631890-1	chr6	122631790	122631990	+	576.0	f0_c57.idr	Intergenic	Intergenic	5466.0	NM_139218	73708.0	Mm.27982	NM_139218	ENSMUSG00000046323	Dppa3	2410075G02Rik|PCG7|PGC7|Stella	developmental pluripotency-associated 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-73821733-1	chr18	73821633	73821833	+	595.0	f1_balb.idr	Intergenic	Intergenic	-6341.0	NM_145494	107029.0	Mm.36817	NM_145494	ENSMUSG00000024556	Me2	AW120568|D030040L20Rik|NAD-ME	malic enzyme 2, NAD(+)-dependent, mitochondrial	protein-coding	1.4448021727275	1.62240639386746	1.00351590970525	0.9886170078498	1.57776087443675	2.01952202683484	1.71619241360593	2.0622812052488	1.94297408527254	0.102572744110295	0.498460377995516
Merged-chr11-83652231-2	chr11	83652131	83652331	+	615.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-2853.0	NM_011337	20302.0	Mm.1282	NM_011337	ENSMUSG00000000982	Ccl3	AI323804|G0S19-1|LD78alpha|MIP-1alpha|MIP1-(a)|MIP1-alpha|Mip1a|Scya3	chemokine (C-C motif) ligand 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-170195737-3	chr2	170195620	170195820	+	588.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53045.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-75141104-3	chr1	75140971	75141171	+	842.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026977, intron 3 of 9)	intron (NM_026977, intron 3 of 9)	620.0	NM_001356264	69171.0	Mm.28193	NM_026977	ENSMUSG00000033159	Cnppd1	1810031K17Rik|AU043960	cyclin Pas1/PHO80 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-75694615-4	chr12	75694524	75694724	+	861.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME4b|LINE|L1	-25087.0	NM_028203	72338.0	Mm.341719	NM_028203	ENSMUSG00000045690	Wdr89	2600001A11Rik	WD repeat domain 89	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-29241727-4	chr19	29241620	29241820	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10083.0	NM_001048177	16452.0	Mm.275839	NM_008413	ENSMUSG00000024789	Jak2	Fd17	Janus kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-135688017-2	chr3	135687917	135688117	+	590.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008689, intron 1 of 24)	intron (NM_008689, intron 1 of 24)	3530.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-156234850-4	chr4	156234792	156234992	+	894.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198305)	promoter-TSS (NM_198305)	-35.0	NM_198305	231003.0	Mm.423038	NM_198305	ENSMUSG00000078485	Klhl17	AL022703|BC058738	kelch-like 17	protein-coding	2.91356589573736	1.75592845529369	3.55447697596101	2.06033222212404	3.00972744663753	1.76975939758795	3.58134207132726	1.87869828344884	0.0341218726989332	0.969079474208563	0.998431161219273
Merged-chr10-88426554-4	chr10	88426379	88426579	+	905.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004164, intron 7 of 20)	intron (NM_001004164, intron 7 of 20)	-33108.0	NM_011517	20962.0	Mm.297977	NM_011517	ENSMUSG00000020059	Sycp3	Cor1|Scp3	synaptonemal complex protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-32545643-3	chr4	32545476	32545676	+	952.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109661, intron 2 of 4)	MTE2b|LTR|ERVL-MaLR	26086.0	NR_026843	414068.0	Mm.389550	NR_026843	ENSMUSG00000086150	Bach2os	-	BTB and CNC homology 2, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-54668926-4	chr3	54668816	54669016	+	972.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23899.0	NR_152185	56790.0	Mm.486375	NM_019995	ENSMUSG00000027751	Supt20	AA667204|AI450544|D3Ertd300e|Fam48a|Supt20h|p38IP	suppressor of Ty 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-119871960-2	chr7	119871860	119872060	+	691.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163703, intron 1 of 2)	intron (NM_001163703, intron 1 of 2)	23498.0	NM_173408	233805.0	Mm.31539	NM_173408	ENSMUSG00000048787	Dcun1d3	1700020A13Rik|BC030335	DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-51996412-4	chr13	51996314	51996514	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-100327.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-84840889-2	chr2	84840774	84840974	+	677.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_024497, exon 2 of 15)	exon (NM_024497, exon 2 of 15)	248.0	NM_001083809	72401.0	Mm.22716	NM_024497	ENSMUSG00000027075	Slc43a1	2610016F07Rik|AA986141|Lat3|PB39|Pov1|R00504	solute carrier family 43, member 1	protein-coding	-0.553304316899417	-0.542225958892391	-0.545862620981082	-0.247533470945677	-0.552614729536782	0.0769127033949409	-0.545061123017839	-0.38297526925948	1.52918094541464	0.563600806823539	1
Merged-chr17-34133481-1	chr17	34133381	34133581	+	708.0	f1_c57bl6.idr	intron (NM_001360530, intron 1 of 5)	intron (NM_001360530, intron 1 of 5)	7963.0	NM_001360530	14998.0	Mm.16373	NM_010386	ENSMUSG00000037649	H2-DMa	H-2Ma|H2-Ma	histocompatibility 2, class II, locus DMa	protein-coding	-0.42385415620415	-0.583271931268707	0.5596300637425	-0.59299426611604	-0.59908947415363	-0.58205036383054	-0.587522605780347	-0.592246778010661	-3.78351376833551	0.143328666596396	1
Merged-chr17-34239321-3	chr17	34239235	34239435	+	863.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010389, intron 1 of 5)	intron (NM_010389, intron 1 of 5)	430.0	NM_010389	15002.0	Mm.327358	NM_010389	ENSMUSG00000041538	H2-Ob	A-beta-2|A-beta2|H-2Ab|H-2I|H-2Ob|H2-Ab|H2-Ab2|H2-IAb2|Ob	histocompatibility 2, O region beta locus	protein-coding	3.17938063105116	2.09891395517154	1.7985336043377	3.51873298254842	2.93323004525596	2.48968614092544	2.40358177605778	3.42337875420035	0.045224961603637	0.954491563627039	0.998431161219273
Merged-chr10-8772637-4	chr10	8772543	8772743	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 8 of 19)	intron (NM_175155, intron 8 of 19)	113427.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-45546099-4	chr4	45545991	45546191	+	866.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-15263.0	NM_001033306	230126.0	Mm.251716	NM_001033306	ENSMUSG00000044813	Shb	BC028832	src homology 2 domain-containing transforming protein B	protein-coding	3.41337899579481	4.9584425441682	3.71251934882774	4.38259873777959	3.27103142178362	4.36038580223983	3.97120186052436	3.9822178268795	-0.409822187577758	0.420927673220179	0.900322118218157
Merged-chr2-38471922-2	chr2	38471822	38472022	+	611.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-39775.0	NM_021606	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-33291009-2	chr4	33290909	33291109	+	880.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19302.0	NM_011884	24018.0	Mm.240024	NM_011884	ENSMUSG00000028274	Rngtt	AU020997|HCE|MCE1	RNA guanylyltransferase and 5'-phosphatase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-74926071-3	chr15	74925964	74926164	+	864.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28987.0	NM_001164039	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	1.0351061374169	0.492108300898027	0.47995781911578	1.50476976491017	0.641509018577989	0.494814967042464	0.482658261823918	1.59400555549998	-0.178377925301079	0.917064839718998	0.998431161219273
Merged-chr5-77354692-4	chr5	77354551	77354751	+	931.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159518, intron 3 of 5)	intron (NM_001159518, intron 3 of 5)	44167.0	NM_153798	231329.0	Mm.273217	NM_153798	ENSMUSG00000029250	Polr2b	Pol2rb|Rpb140|Rpb2	polymerase (RNA) II (DNA directed) polypeptide B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-92962014-4	chr7	92961931	92962131	+	874.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR16|LTR|ERVK	86778.0	NM_028243	72461.0	Mm.389969	NM_028243	ENSMUSG00000061119	Prcp	2510048K03Rik|2610104A14Rik|AI451719|HUMPCP|PCP	prolylcarboxypeptidase (angiotensinase C)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53806616-3	chr4	53806516	53806716	+	796.133362	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPEY3-int|LTR|ERVK	-19429.0	NM_028053	52076.0	Mm.27184	NM_028053	ENSMUSG00000028420	Tmem38b	1600017F22Rik|AA437809|AV051057|D4Ertd89e|TRIC-B|mg33b	transmembrane protein 38B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-103859662-4	chr3	103859554	103859754	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008979)	promoter-TSS (NM_008979)	-141.0	NR_104070	19260.0	Mm.395	NM_008979	ENSMUSG00000027843	Ptpn22	70zpep|PEP|Ptpn8	protein tyrosine phosphatase, non-receptor type 22 (lymphoid)	protein-coding	3.13070517302288	2.25129662764633	3.66022540806776	3.04596737340699	3.47385433037061	2.64276286909194	2.83197022143127	3.51902490666552	0.103806474642531	0.875542112920934	0.998431161219273
Merged-chr1-171703288-4	chr1	171703177	171703377	+	793.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007649, intron 3 of 3)	(TGGGGG)n|Simple_repeat|Simple_repeat	21285.0	NM_001360767	12506.0	Mm.1738	NM_007649	ENSMUSG00000015355	Cd48	AI449234|AW610730|BCM1|BLAST|BLAST-1|BLAST1|Bcm-1|MEM-102|SLAMF2|Sgp-60	CD48 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-164832937-4	chr2	164832874	164833074	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008906)	promoter-TSS (NM_008906)	102.0	NM_001038492	19025.0	Mm.359633	NM_008906	ENSMUSG00000017760	Ctsa	AU019505|PPCA|Ppgb	cathepsin A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-57925109-3	chr19	57925005	57925205	+	759.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181415, intron 26 of 28)	intron (NM_181415, intron 26 of 28)	-126062.0	NR_049196	100885835.0		NR_049196	ENSMUSG00000093757	Mir5623	Gm26068|mir-5623|mmu-mir-5623	microRNA 5623	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-152464493-3	chr3	152464431	152464631	+	839.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081277, intron 13 of 13)	intron (NM_001081277, intron 13 of 13)	67847.0	NM_001287139	108946.0	Mm.379292	NM_198416	ENSMUSG00000039068	Zzz3	3110065C23Rik|6430567E01Rik|AA408566|AI481057|AW556059|R75514	zinc finger, ZZ domain containing 3	protein-coding	-1.33793447301127	-1.30826030895896	-1.31828845321677	-1.32652586948969	-0.950077789383471	-1.30608716826488	-1.15822981092724	-1.32505137591525	2.29714043412452	0.496446034091415	1
Merged-chr14-54517539-4	chr14	54517447	54517647	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013768)	promoter-TSS (NM_013768)	-77.0	NM_001313907	27374.0	Mm.196585	NM_013768	ENSMUSG00000023110	Prmt5	Jbp1|Skb1	protein arginine N-methyltransferase 5	protein-coding	7.15261625549374	7.43133130338737	7.18206072790275	7.11279416235552	7.33860622404358	7.16686264777965	7.28693078171901	7.17420871227915	0.0252935965981529	0.871633987486003	0.998431161219273
Merged-chr7-19266141-4	chr7	19266046	19266246	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009499, intron 1 of 12)	intron (NM_009499, intron 1 of 12)	5708.0	NM_001282021	22323.0	Mm.9684	NM_009499	ENSMUSG00000030403	Vasp	-	vasodilator-stimulated phosphoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-118699990-2	chr7	118699914	118700114	+	769.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019580, intron 1 of 5)	intron (NM_019580, intron 1 of 5)	5724.0	NM_019580	56209.0	Mm.273142	NM_019580	ENSMUSG00000033917	Gde1	1200003M13Rik|Mir16|RGS16	glycerophosphodiester phosphodiesterase 1	protein-coding	0.969197817320155	0.787219064482977	1.07594672918038	0.543445092347736	1.09182336595717	0.566217855529126	1.68967513536018	0.545004895827091	0.949898875026836	0.548665629212131	0.958294539645345
Merged-chr10-92841209-1	chr10	92841109	92841309	+	676.0	f0_balb.idr	intron (NM_001347060, intron 61 of 67)	intron (NM_001347060, intron 61 of 67)	-118791.0	NM_008682	17997.0	Mm.2998	NM_008682	ENSMUSG00000019988	Nedd1	-	neural precursor cell expressed, developmentally down-regulated gene 1	protein-coding	-0.808804940584917	-0.799786701961649	-0.802751219047927	-0.805031857927833	-0.337841218662525	-0.797497648427291	-0.8020981923316	-0.382832650910795	3.09927553827885	0.29646665505041	1
Merged-chr12-86832373-4	chr12	86832280	86832480	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52434.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-120887896-4	chr4	120887803	120888003	+	960.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_182929, intron 5 of 7)	intron (NM_182929, intron 5 of 7)	33104.0	NM_182929	242662.0	Mm.192502	NM_182929	ENSMUSG00000032890	Rims3	A730060M23Rik|Nim3|Rim3|mKIAA0237	regulating synaptic membrane exocytosis 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128211143-2	chr10	128211043	128211243	+	686.166687	f1_balb.idr|f1_c57bl6.idr	exon (NM_025716, exon 2 of 2)	exon (NM_025716, exon 2 of 2)	651.0	NM_025716	66701.0	Mm.29694	NM_025716	ENSMUSG00000051346	Spryd4	4633402N23Rik|AA114801	SPRY domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-16007647-2	chr3	16007547	16007747	+	776.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	-1315.0	NM_001081687	381484.0	Mm.217376	NM_001081687	ENSMUSG00000078780	Gm5150	-	predicted gene 5150	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120939685-2	chr11	120939585	120939785	+	872.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6813.0	NM_027745	71276.0	Mm.275751	NM_027745	ENSMUSG00000048445	Ccdc57	4933434G05Rik	coiled-coil domain containing 57	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-51972744-1	chr7	51972644	51972844	+	577.0	f0_balb.idr	intron (NM_001330607, intron 7 of 7)	intron (NM_001330607, intron 7 of 7)	32970.0	NR_027704	75744.0	Mm.386823	NM_001160345	ENSMUSG00000074093	Svip	1700006C13Rik|6620401M08Rik	small VCP/p97-interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-88409473-4	chr4	88409363	88409563	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081184, intron 43 of 43)	intron (NM_001081184, intron 43 of 43)	29463.0	NM_025760	66775.0	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	3.37207087957275	3.40286986948612	1.92542942141535	2.43870186108909	3.27591357016773	3.34031697183106	3.31622017563966	3.13289422167422	0.55899032051628	0.408752679165566	0.892540884123112
Merged-chr14-120399622-2	chr14	120399522	120399722	+	619.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360380, intron 7 of 7)	intron (NM_001360380, intron 7 of 7)	-78839.0	NM_029519	76108.0	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-65841016-2	chr17	65840916	65841116	+	675.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_104465, exon 19 of 19)	non-coding (NR_104465, exon 19 of 19)	43907.0	NM_001198949	19765.0	Mm.17009	NM_009067	ENSMUSG00000024096	Ralbp1	RLIP76|Rip1	ralA binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-36670015-1	chr16	36669915	36670115	+	1000.0	f0_c57.idr	Intergenic	Intergenic	-3938.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-36578092-1	chr15	36577992	36578192	+	743.0	f0_balb.idr	Intergenic	L1MB8|LINE|L1	-22519.0	NM_025712	66696.0	Mm.253627	NM_025712	ENSMUSG00000013611	Snx31	4631426E05Rik	sorting nexin 31	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-46818451-1	chr11	46818351	46818551	+	797.0	f1_c57bl6.idr	intron (NM_178759, intron 3 of 8)	(CA)n|Simple_repeat|Simple_repeat	7652.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	-0.605338310091921	-0.593868103307773	-0.59762578130298	-0.600525072295786	-0.214106796723694	-0.593021103578478	0.0971045915479538	-0.600018566212953	3.44010559550016	0.213475758164833	1
Merged-chr3-87982994-3	chr3	87982898	87983098	+	960.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11905.0	NM_016701	18008.0	Mm.331129	NM_016701	ENSMUSG00000004891	Nes	AA166324|C78523|ESTM46|Ifaprc2|Marc2|RC2	nestin	protein-coding	2.44175349149837	3.49888344401089	2.77926514994828	3.68153296046165	2.46345619705221	2.48824143375152	1.51716261034501	3.00491874910775	-1.30465812994064	0.0919200458847582	0.46890166263832
Merged-chr14-76531463-2	chr14	76531363	76531563	+	712.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10608.0	NR_045660	75789.0	Mm.159571	NR_045660	ENSMUSG00000097172	4930444M15Rik	-	RIKEN cDNA 4930444M15 gene	ncRNA	0.59268948380276	1.1859543972997	0.433871742320005	0.424270512244649	0.410416059661117	1.19905130535975	0.436587193782339	1.63636509597077	1.43199342663941	0.408676388227223	0.892482582080491
Merged-chr16-75763885-2	chr16	75763785	75763985	+	766.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_027492, intron 2 of 5)	Lx2B2|LINE|L1	2933.0	NR_027492	110920.0	Mm.26704	NM_030201	ENSMUSG00000032932	Hspa13	1600002I10Rik|AV006182|B230217N24Rik|Stch	heat shock protein 70 family, member 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70764773-5	chr8	70764661	70764861	+	921.2666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_023065, exon 4 of 8)	exon (NM_023065, exon 4 of 8)	1902.0	NM_023065	65972.0	Mm.30241	NM_023065		Ifi30	GILT|IP30	interferon gamma inducible protein 30	protein-coding	1.98178281611869	2.22189817773179	1.82091008318315	2.53082931201801	2.58252016162861	2.71622555306358	1.36910891235948	2.71333619881807	0.650972438429622	0.475122349720833	0.927029054433838
Merged-chr5-92098491-4	chr5	92098346	92098546	+	907.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359197, intron 1 of 10)	intron (NM_001359197, intron 1 of 10)	-14702.0	NM_001080795	23881.0	Mm.290530	NM_011816	ENSMUSG00000029405	G3bp2	AA409541|E430034L04Rik|G3BP|mKIAA0660	GTPase activating protein (SH3 domain) binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-72662773-2	chr9	72662673	72662873	+	628.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010890, intron 1 of 28)	CpG	442.0	NM_010890	17999.0	Mm.279923	NM_010890	ENSMUSG00000032216	Nedd4	AA959633|AL023035|AU019897|E430025J12Rik|EG639396|Gm7265|KIAA0093|Nedd4-1|Nedd4a	neural precursor cell expressed, developmentally down-regulated 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-95827611-4	chr16	95827521	95827721	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	71092.0	NR_040485	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-32641072-2	chr11	32640972	32641172	+	579.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1483.0	NM_001271348	103583.0	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-99521317-5	chr6	99521208	99521408	+	889.7666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347345)	promoter-TSS (NM_001347345)	-315.0	NM_001347345	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84971789-2	chr8	84971689	84971889	+	761.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001317385, intron 5 of 5)	intron (NM_001317385, intron 5 of 5)	2167.0	NM_011563	21672.0	Mm.347009	NM_011563	ENSMUSG00000005161	Prdx2	AL022839|Band-8|NkefB|PRP|PrxII|TDX1|TPx|TPx-B|TR|TSA|Tdpx1|Torin	peroxiredoxin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-83860908-4	chr12	83860791	83860991	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_073564, intron 2 of 12)	MTEa|LTR|ERVL-MaLR	15921.0	NM_001272056	18222.0	Mm.4390	NM_010949	ENSMUSG00000021224	Numb	Nb	NUMB endocytic adaptor protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-67351537-4	chr17	67351452	67351652	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	2907.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-41182732-1	chr9	41182632	41182832	+	571.0	f0_balb.idr	Intergenic	Intergenic	-23423.0	NR_040392	78500.0	Mm.275715	NR_040392	ENSMUSG00000100837	1700063D05Rik	-	RIKEN cDNA 1700063D05 gene	ncRNA	2.24684548547046	1.46188366892135	2.81987414651042	2.38118756096571	2.26765093003414	2.7085458111377	4.04771580040882	2.75082869783951	1.51112386999125	0.0666128831840486	0.386969676779639
Merged-chr6-124278413-3	chr6	124278322	124278522	+	753.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-26229.0	NM_001170395	93671.0	Mm.37426	NM_053094	ENSMUSG00000008845	Cd163	CD163v2|CD163v3	CD163 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-102417602-4	chr7	102417505	102417705	+	988.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009287, intron 6 of 11)	intron (NM_009287, intron 6 of 11)	-24090.0	NM_009103	20133.0	Mm.197486	NM_009103	ENSMUSG00000030978	Rrm1	RnrM1	ribonucleotide reductase M1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-66799941-2	chr15	66799841	66800041	+	597.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001029841, intron 2 of 7)	intron (NM_001029841, intron 2 of 7)	31888.0	NM_001029841	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-17450726-2	chr12	17450636	17450836	+	793.0	f0_balb.idr|f1_balb.idr	Intergenic	B3A|SINE|B2	-94137.0	NM_013614	18263.0	Mm.34102	NM_013614	ENSMUSG00000011179	Odc1	ODC	ornithine decarboxylase, structural 1	protein-coding	1.87536139803638	2.64121754436057	1.3836338707791	2.37233635999167	2.36990473396815	2.11639958562332	2.76354496685784	2.97732267385329	0.975966714712215	0.268640707414794	0.771990954092706
Merged-chr3-69009539-2	chr3	69009439	69009639	+	778.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029529)	promoter-TSS (NR_029529)	-233.0	NR_029529	387175.0		NR_029529	ENSMUSG00000065580	Mir15b	Mirn15b|mir-15b|mmu-mir-15b	microRNA 15b	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-16093172-3	chr1	16093066	16093266	+	910.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001243238, exon 1 of 5)	5' UTR (NM_001243238, exon 1 of 5)	159.0	NM_001243238	75799.0	Mm.78557	NM_001243238	ENSMUSG00000067795	4930444P10Rik	-	RIKEN cDNA 4930444P10 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-38743173-2	chr6	38743073	38743273	+	708.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001294144, exon 6 of 15)	exon (NM_001294144, exon 6 of 15)	80104.0	NM_001101507	665180.0	Mm.349066	NM_001101507	ENSMUSG00000079598	Clec2l	AI414054|AW122724|Gm1064	C-type lectin domain family 2, member L	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124530084-3	chr5	124529956	124530156	+	728.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021430, intron 1 of 6)	intron (NM_021430, intron 1 of 6)	1335.0	NM_021430	75695.0	Mm.41180	NM_021430	ENSMUSG00000029392	Rilpl1	2900002H16Rik|6330559I19Rik|GOSPEL	Rab interacting lysosomal protein-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-25284632-4	chr10	25284537	25284737	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018747, intron 2 of 7)	intron (NM_018747, intron 2 of 7)	14526.0	NM_018747	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-69510957-1	chr18	69510857	69511057	+	602.0	f0_balb.idr	intron (NM_001361128, intron 5 of 19)	intron (NM_001361128, intron 5 of 19)	164797.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-62879367-4	chr11	62879245	62879445	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356521)	promoter-TSS (NM_001356521)	-110.0	NM_001356520	67510.0	Mm.9806	NM_026210	ENSMUSG00000014177	Tvp23b	1810036I24Rik|Fam18b|Fam18b1	trans-golgi network vesicle protein 23B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-91040585-2	chr1	91040485	91040685	+	892.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111312, intron 1 of 12)	intron (NM_001111312, intron 1 of 12)	-12859.0	NM_001111311	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52061639-4	chr13	52061532	52061732	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35109.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-85525825-3	chr11	85525737	85525937	+	956.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138681, intron 16 of 25)	intron (NM_138681, intron 16 of 25)	172673.0	NM_001166643	192197.0	Mm.209989	NM_138681	ENSMUSG00000059439	Bcas3	1500019F07Rik|2610028P08Rik|AU021018|BC028339|K20D4|rudhira	breast carcinoma amplified sequence 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-54883112-2	chr18	54883012	54883212	+	614.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	107068.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-142931303-2	chr5	142931203	142931403	+	954.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24549.0	NM_007393	11461.0	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-27689597-4	chr3	27689496	27689696	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356953, intron 1 of 26)	G-rich|Low_complexity|Low_complexity	20856.0	NM_001356953	72007.0	Mm.38832	NM_173182	ENSMUSG00000039286	Fndc3b	1600019O04Rik|AW550168|Fad104|mKIAA4164	fibronectin type III domain containing 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-84876570-2	chr4	84876470	84876670	+	909.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7739.0	NM_175275	338349.0	Mm.440562	NM_175275	ENSMUSG00000038070	Cntln	AI448092|B430108F07Rik|D530005L17Rik	centlein, centrosomal protein	protein-coding	0.891007729982009	0.565495589972716	0.548946170647894	0.535809740119223	1.0491591637236	1.84149879324603	1.92552291560746	0.538128982307969	3.62108729601113	0.0288667662575733	0.230793066342757
Merged-chr3-41390052-3	chr3	41389924	41390124	+	897.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	103175.0	NR_040385	78706.0	Mm.366094	NR_040385	ENSMUSG00000097639	Platr4	C430002E04Rik	pluripotency associated transcript 4	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-108662959-3	chr8	108662856	108663056	+	945.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51688.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-11705303-4	chr2	11705190	11705390	+	999.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133836)	promoter-TSS (NM_133836)	-3.0	NM_001271498	16169.0	Mm.200196	NM_008358	ENSMUSG00000023206	Il15ra	AA690181|IL-15RA	interleukin 15 receptor, alpha chain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-78479750-2	chr9	78479650	78479850	+	939.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_010106, exon 5 of 8)	exon (NM_010106, exon 5 of 8)	1974.0	NM_010106	13627.0	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43034661-2	chr4	43034561	43034761	+	552.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001253353, exon 5 of 9)	exon (NM_001253353, exon 5 of 9)	-3277.0	NM_023231	66592.0	Mm.331565	NM_023231	ENSMUSG00000028455	Stoml2	0610038F01Rik|MSLP2|SLP-2	stomatin (Epb7.2)-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-77460487-4	chr5	77460373	77460573	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5015.0	NR_131050	69370.0	Mm.426881	NR_131050	ENSMUSG00000107232	1700017L05Rik	-	RIKEN cDNA 1700017L05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-88663502-2	chr8	88663402	88663602	+	777.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145857, intron 3 of 12)	intron (NM_145857, intron 3 of 12)	16155.0	NM_145857	257632.0	Mm.222633	NM_145857	ENSMUSG00000055994	Nod2	ACUG|BLAU|CD|Card15|F830032C23Rik|IBD1|Nlrc2	nucleotide-binding oligomerization domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-100028861-3	chr4	100028769	100028969	+	653.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66922.0	NM_013845	26563.0	Mm.57252	NM_013845	ENSMUSG00000035305	Ror1	2810404D04Rik|Ntrkr1	receptor tyrosine kinase-like orphan receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-103353079-2	chr15	103352979	103353179	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001314041, intron 14 of 30)	intron (NM_001314041, intron 14 of 30)	-2554.0	NR_105928	102466775.0		NR_105928	ENSMUSG00000098419	Mir6963	Gm27724|mmu-mir-6963	microRNA 6963	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80829782-4	chr7	80829737	80829937	+	731.6875	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-26506.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	0.977952696492818	1.07477986805059	2.51660834731137	1.48339491551824	1.84829486982144	2.79165696459358	2.25931601863681	1.28187715465329	1.13676630199163	0.326431428690539	0.828718637627822
Merged-chr1-166738168-2	chr1	166738068	166738268	+	693.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56323.0	NM_001347135	240894.0	Mm.246610	NM_172844	ENSMUSG00000026560	Fmo9	4831428F09Rik	flavin containing monooxygenase 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-71118024-2	chr2	71117924	71118124	+	647.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028593)	promoter-TSS (NM_028593)	-30.0	NM_028593	73649.0	Mm.45435	NM_028593	ENSMUSG00000027015	Cybrd1	2210407P13Rik|Dcytb	cytochrome b reductase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-22656777-4	chr11	22656706	22656906	+	995.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	144523.0	NM_153596	103765.0	Mm.221274	NM_153596	ENSMUSG00000049904	Tmem17	AI503894|AW049890	transmembrane protein 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-78237619-2	chr10	78237519	78237719	+	597.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081055, intron 1 of 22)	URR1A|DNA|hAT-Charlie	7023.0	NM_001081055	216131.0	Mm.27539	NM_001081055	ENSMUSG00000000374	Trappc10	B230307C21Rik|Gm870|Tmem1|b2b2416Clo|b2b2613Clo	trafficking protein particle complex 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-173879026-1	chr1	173878926	173879126	+	602.5	f0_balb.idr	intron (NM_001170853, intron 2 of 9)	intron (NM_001170853, intron 2 of 9)	1161.0	NM_001170853	100040462.0	Mm.463437	NM_001170853	ENSMUSG00000090272	Mndal	Gm2785|Ifi212	myeloid nuclear differentiation antigen like	protein-coding	2.01320522980775	2.08094646710986	3.32678684938392	1.43617373355427	3.28421457557136	3.12376202295077	3.72583848134332	2.92071028899733	1.55135086230888	0.0495611485724662	0.324582238303739
Merged-chr7-127303227-3	chr7	127303131	127303331	+	814.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253873, intron 7 of 30)	ORR1G|LTR|ERVL-MaLR	6971.0	NM_001253874	16408.0	Mm.1618	NM_008400	ENSMUSG00000030830	Itgal	(p180)|Cd11a|LFA-1|LFA-1A|Ly-15|Ly-21	integrin alpha L	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-121818962-2	chr5	121818842	121819042	+	828.25	f1_balb.idr|f1_c57bl6.idr	TTS (NR_105998)	TTS (NR_105998)	331.0	NR_105998	102465624.0		NR_105998	ENSMUSG00000099063	Mir7031	Gm27859|mmu-mir-7031	microRNA 7031	ncRNA	-1.53362919331644	-1.50201671710775	-1.51157659084044	-1.08120497225282	-1.53141005593807	-1.49994505258991	-1.50941244497383	-1.51802371459528	-1.94474658522739	0.577200604274218	1
Merged-chr11-101172630-2	chr11	101172530	101172730	+	584.75	f1_balb.idr|f1_c57bl6.idr	TTS (NM_007721)	TTS (NM_007721)	-1258.0	NM_001346769	217198.0	Mm.273254	NM_146030	ENSMUSG00000035172	Plekhh3	BC020025	pleckstrin homology domain containing, family H (with MyTH4 domain) member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120375939-2	chr11	120375839	120376039	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027980, intron 3 of 9)	intron (NM_027980, intron 3 of 9)	2807.0	NM_027980	71885.0	Mm.274890	NM_027980	ENSMUSG00000025384	Faap100	2310003H01Rik	Fanconi anemia core complex associated protein 100	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-118692507-2	chr14	118692407	118692607	+	746.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163676, intron 1 of 29)	intron (NM_001163676, intron 1 of 29)	13712.0	NM_001163676	239273.0	Mm.40537	NM_001033336	ENSMUSG00000032849	Abcc4	ABCC4-N1|D630049P08Rik|MOATB|MRP4	ATP-binding cassette, sub-family C (CFTR/MRP), member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-23428392-2	chr13	23428292	23428492	+	580.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_015492, exon 3 of 4)	non-coding (NR_015492, exon 3 of 4)	2625.0	NR_015492	320842.0	Mm.487476	NR_015492	ENSMUSG00000085024	C230035I16Rik	-	RIKEN cDNA C230035I16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-25006654-1	chr17	25006554	25006754	+	711.0	f0_balb.idr	intron (NM_020608, intron 2 of 20)	intron (NM_020608, intron 2 of 20)	8576.0	NM_020608	57354.0	Mm.328854	NM_020608	ENSMUSG00000038002	Cramp1l	5830477H08Rik|AI256853|AI790734|Cramp1|Tce4|mKIAA1426	cramped chromatin regulator homolog 1	protein-coding	1.13405687388758	1.24705502002277	2.04254260799433	1.65041558683645	2.64317788880687	2.97695603467714	2.20006801251823	2.6316038306248	2.71794895247266	0.00634541218013171	0.0794939502260114
Merged-chr11-94993470-4	chr11	94993365	94993565	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172261, intron 1 of 9)	intron (NM_172261, intron 1 of 9)	2253.0	NM_172261	217124.0	Mm.229087	NM_172261	ENSMUSG00000038976	Ppp1r9b	SPL|Spn	protein phosphatase 1, regulatory subunit 9B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141016222-3	chr4	141016130	141016330	+	885.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008546)	TTS (NM_008546)	5593.0	NM_008546	17150.0	Mm.7386	NM_008546	ENSMUSG00000060572	Mfap2	AI893631|Magp|Magp1	microfibrillar-associated protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28747730-2	chr7	28747630	28747830	+	961.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023637, intron 6 of 15)	intron (NM_023637, intron 6 of 15)	5762.0	NM_023637	71984.0	Mm.333725	NM_023637	ENSMUSG00000070699	Sars2	2410015F05Rik|D7Ertd353e|SerRS|SerRSmt	seryl-aminoacyl-tRNA synthetase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-84850638-4	chr17	84850518	84850718	+	986.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-59832.0	NM_028233	72416.0	Mm.217027	NM_028233	ENSMUSG00000024120	Lrpprc	3110001K13Rik|C76645|Gp130|Lrp130|Lsfc	leucine-rich PPR-motif containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120736298-4	chr8	120736202	120736402	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008320)	promoter-TSS (NM_008320)	-56.0	NM_008320	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-34671556-2	chr2	34671456	34671656	+	740.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	83676.0	NM_001356441	66691.0	Mm.156452	NM_025709	ENSMUSG00000026867	Gapvd1	2010005B09Rik|4432404J10Rik|AW108497|Gapex-5|RAP6|RME-6|mKIAA1521	GTPase activating protein and VPS9 domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-100032776-4	chr10	100032672	100032872	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347156, intron 1 of 8)	intron (NM_001347156, intron 1 of 8)	16951.0	NM_013598	17311.0	Mm.45124	NM_013598	ENSMUSG00000019966	Kitl	Clo|Con|Gb|Kitlg|Mgf|SCF|SF|SLF|Sl|blz|contrasted	kit ligand	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-69455767-4	chr12	69455662	69455862	+	961.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19788.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	3.93419809395759	4.00176354164907	3.63028447221791	3.96246784314514	3.52676925371683	4.23573026451388	3.9711860701519	4.77792560189672	0.431789214947664	0.356799045271397	0.85378439273359
Merged-chr11-52001485-2	chr11	52001385	52001585	+	654.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1019.0	NM_009458	22210.0	Mm.384918	NM_009458	ENSMUSG00000020390	Ube2b	E2-14k|HR6B|Rad6b|mHR6B	ubiquitin-conjugating enzyme E2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-52145016-4	chr16	52144900	52145100	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033238, intron 9 of 17)	intron (NM_001033238, intron 9 of 17)	113451.0	NM_001033238	208650.0	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-39893329-1	chr1	39893229	39893429	+	600.0	f0_balb.idr	Intergenic	C-rich|Low_complexity|Low_complexity	-7584.0	NM_001252202	26921.0	Mm.491139	NM_008696	ENSMUSG00000026074	Map4k4	9430080K19Rik|AU043147|AU045934|AW046177|HGK|Nik	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-22959858-2	chr15	22959758	22959958	+	883.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur1|LINE|L1	-76605.0	NM_001081299	320865.0	Mm.241965	NM_001081299	ENSMUSG00000040420	Cdh18	B230220E17Rik|Cdh14l|Tg(GFAP-APOE_i4)1Hol	cadherin 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-84648343-3	chr3	84648232	84648432	+	566.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17860.0	NM_177260	320782.0	Mm.107370	NM_177260	ENSMUSG00000056498	Tmem154	9930117H01Rik	transmembrane protein 154	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-49216122-4	chr13	49216037	49216237	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026738)	promoter-TSS (NM_026738)	-111.0	NM_026738	68480.0	Mm.3336	NM_026738	ENSMUSG00000037960	Card19	1110007C09Rik|AI851695|Bincard	caspase recruitment domain family, member 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99260120-4	chr15	99260041	99260241	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045627, intron 1 of 2)	intron (NR_045627, intron 1 of 2)	-8180.0	NM_016766	51812.0	Mm.383472	NM_016766	ENSMUSG00000037570	Mcrs1	C78274|ICP22BP|MSP58|P78	microspherule protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46732759-4	chr8	46732631	46732831	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045750, intron 2 of 2)	intron (NR_045750, intron 2 of 2)	6784.0	NR_045750	100503498.0	Mm.187358	NR_045750	ENSMUSG00000097534	Gm16675	-	predicted gene, 16675	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-174330845-4	chr2	174330718	174330918	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201616, intron 1 of 11)	CpG-8943	729.0	NM_001077510	14683.0	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5602160-4	chr17	5602066	5602266	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	109566.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59826429-2	chr15	59826299	59826499	+	728.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31440.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-114997244-4	chr4	114997163	114997363	+	800.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2855.0	NM_001304559	20460.0	Mm.3988	NM_009185	ENSMUSG00000028718	Stil	Sil	Scl/Tal1 interrupting locus	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117844403-4	chr10	117844305	117844505	+	982.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024457, intron 1 of 7)	intron (NM_024457, intron 1 of 7)	1569.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-98384074-2	chr4	98383974	98384174	+	710.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053157)	promoter-TSS (NM_053157)	-809.0	NM_053157	94043.0	Mm.331719	NM_053157	ENSMUSG00000028563	Tm2d1	2310026L18Rik|AA990549|Bbp	TM2 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-47755152-4	chr19	47755047	47755247	+	970.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_106165)	promoter-TSS (NR_106165)	10.0	NR_106165	102465883.0		NR_106165	ENSMUSG00000099069	Mir8090	Gm27862|mmu-mir-8090	microRNA 8090	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141858774-4	chr4	141858665	141858865	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_025994, exon 4 of 4)	3' UTR (NM_025994, exon 4 of 4)	-12406.0	NM_001033875	76701.0	Mm.489680	NM_001033875	ENSMUSG00000062478	Ctrc	1810044E12Rik	chymotrypsin C (caldecrin)	protein-coding	5.62724320464517	5.95538063567426	5.45499922242822	5.7894210884397	5.2321948199577	5.15792811813012	6.06124027391041	5.48548809862646	-0.20952832592578	0.463486628403201	0.922012074083581
Merged-chr11-80199679-2	chr11	80199579	80199779	+	586.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_028019)	TTS (NM_028019)	-9376.0	NM_001163354	59040.0	Mm.489674	NM_021536	ENSMUSG00000017686	Rhot1	2210403N23Rik|AA415293|AF244542|AI834919|Arht1|C430039G08Rik|Miro1	ras homolog family member T1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-13262097-2	chr5	13261997	13262197	+	786.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2B2|LINE|L1	-134687.0	NM_001243072	20346.0	Mm.372039	NM_009152	ENSMUSG00000028883	Sema3a	Hsema-I|SEMA1|SemD|Semad|coll-1	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-43533194-4	chr7	43533077	43533277	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021293)	promoter-TSS (NM_021293)	-6.0	NM_021293	12489.0	Mm.140157	NM_021293	ENSMUSG00000004609	Cd33	Siglec-3|gp67	CD33 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-72674342-2	chr8	72674242	72674442	+	618.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_176940, intron 7 of 18)	intron (NM_176940, intron 7 of 18)	27631.0	NM_176940	319555.0	Mm.390076	NM_176940	ENSMUSG00000048148	Nwd1	A230063L24Rik	NACHT and WD repeat domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-43306022-4	chr9	43305903	43306103	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4760.0	NM_023655	72169.0	Mm.273277	NM_023655	ENSMUSG00000032013	Trim29	1110047J21Rik|2810431N19Rik|4732461M22Rik|AI119726	tripartite motif-containing 29	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-5298260-2	chr9	5298160	5298360	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009807)	promoter-TSS (NM_009807)	-257.0	NM_009807	12362.0	Mm.1051	NM_009807	ENSMUSG00000025888	Casp1	ICE|Il1bc	caspase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-63385511-1	chr4	63385411	63385611	+	740.0	f0_balb.idr	intron (NM_001045514, intron 6 of 21)	intron (NM_001045514, intron 6 of 21)	12729.0	NM_001305432	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-123283124-3	chr4	123283047	123283247	+	851.1555789999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001356377, exon 1 of 14)	5' UTR (NM_001356377, exon 1 of 14)	236.0	NM_130881	230721.0	Mm.277091	NM_130881	ENSMUSG00000011257	Pabpc4	-	poly(A) binding protein, cytoplasmic 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-22857664-2	chr11	22857564	22857764	+	973.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001169114, intron 1 of 1)	intron (NM_001169114, intron 1 of 1)	2071.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-53059279-4	chr18	53059163	53059363	+	970.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-117029.0	NM_001357463	67804.0	Mm.252171	NM_026386	ENSMUSG00000034484	Snx2	0610030A03Rik	sorting nexin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-62366890-1	chr9	62366790	62366990	+	542.0	f0_balb.idr	intron (NM_009672, intron 1 of 6)	intron (NM_009672, intron 1 of 6)	25547.0	NM_009672	11737.0	Mm.269088	NM_009672	ENSMUSG00000032249	Anp32a	Anp32|I1PP2A|LANP|PHAP1|W91701|pp32	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-49121480-4	chr7	49121351	49121551	+	953.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_154465)	TTS (NR_154465)	40707.0	NR_154465	108167511.0	Mm.400599	NR_154465		9130015G15Rik	-	RIKEN cDNA 9130015G15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117794281-2	chr10	117794181	117794381	+	612.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1576.0	NM_134010	103468.0	Mm.12568	NM_134010	ENSMUSG00000052798	Nup107	AW541137|C76801	nucleoporin 107	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-118534875-2	chr7	118534775	118534975	+	585.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_172476)	TTS (NM_172476)	-1519.0	NM_009940	12850.0	Mm.20634	NM_009940	ENSMUSG00000030652	Coq7	clk-1	demethyl-Q 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-82290957-1	chr1	82290857	82291057	+	586.0	f0_balb.idr	5' UTR (NM_010570, exon 1 of 2)	5' UTR (NM_010570, exon 1 of 2)	482.0	NM_010570	16367.0	Mm.4952	NM_010570	ENSMUSG00000055980	Irs1	G972R|IRS-1	insulin receptor substrate 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125351497-4	chr6	125351405	125351605	+	993.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011609, intron 1 of 9)	intron (NM_011609, intron 1 of 9)	1782.0	NM_011609	21937.0	Mm.1258	NM_011609	ENSMUSG00000030341	Tnfrsf1a	CD120a|FPF|TNF-R|TNF-R-I|TNF-R1|TNF-R55|TNF-alphaR1|TNFAR|TNFR60|TNFRI|TNFRp55|TNFalpha-R1|Tnfr-2|Tnfr1|p55|p55-R	tumor necrosis factor receptor superfamily, member 1a	protein-coding	2.77380573819356	2.90761971740272	3.18805462375917	3.44167455281538	3.17566488755426	3.32210400937163	1.55443641601757	1.99985928335017	-0.657310361376542	0.400213012659142	0.885176145862419
Merged-chr8-105343439-2	chr8	105343339	105343539	+	576.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177699, intron 1 of 21)	intron (NM_177699, intron 1 of 21)	4531.0	NM_177699	234686.0	Mm.87724	NM_177699	ENSMUSG00000014778	Fhod1	BC017144|FHOS|FHOS1	formin homology 2 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-134925637-2	chr4	134925537	134925737	+	771.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023665, intron 3 of 4)	intron (NM_023665, intron 3 of 4)	2012.0	NM_023665	27981.0	Mm.331964	NM_023665	ENSMUSG00000037266	Rsrp1	2700043I21Rik|D4Ucla2|D4Wsu53e	arginine/serine rich protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-53638310-2	chr19	53638210	53638410	+	836.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007790, intron 21 of 28)	B2_Mm2|SINE|B2	37914.0	NM_007790	13006.0	Mm.14910	NM_007790	ENSMUSG00000024974	Smc3	Bamacan|Cspg6|HCAP|Mmip1|SMC-3|SmcD	structural maintenance of chromosomes 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-103718448-2	chr14	103718348	103718548	+	967.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19016.0	NR_045148	70898.0	Mm.27548	NR_045148	ENSMUSG00000089707	Slain1os	4921525B02Rik	SLAIN motif family, member 1, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-44686203-4	chr10	44686090	44686290	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-227442.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-64588877-2	chr17	64588777	64588977	+	598.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR17B_Mm|LTR|ERVK	-12772.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-41740335-2	chr4	41740235	41740435	+	557.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286542, intron 1 of 1)	intron (NM_001286542, intron 1 of 1)	1024.0	NM_001286540	18391.0	Mm.425181	NM_011014	ENSMUSG00000036078	Sigmar1	Oprs1|Sig1R|sigma1R	sigma non-opioid intracellular receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59810286-2	chr15	59810213	59810413	+	643.625	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-15354.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-87472663-3	chr8	87472568	87472768	+	861.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019626)	promoter-TSS (NM_019626)	-76.0	NM_019626	12404.0	Mm.4880	NM_019626	ENSMUSG00000031654	Cbln1	AI323299	cerebellin 1 precursor protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-96188338-4	chr10	96188278	96188478	+	923.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37829.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-149737462-3	chr4	149737372	149737572	+	989.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001284270, intron 1 of 10)	intron (NM_001284270, intron 1 of 10)	298.0	NM_001284273	230917.0	Mm.266704	NM_177672	ENSMUSG00000044700	Tmem201	AV028368|D4Ertd429e|Net5|Samp1	transmembrane protein 201	protein-coding	2.00403883311549	1.15735915825089	1.36356148136114	2.11620244139278	1.45409056707847	2.17374994187359	1.72391888931812	2.12757207859732	0.473962318787647	0.662133421464201	0.991056031673253
Merged-chr8-84219282-2	chr8	84219182	84219382	+	839.900024	f1_balb.idr|f1_c57bl6.idr	intron (NM_172503, intron 11 of 13)	intron (NM_172503, intron 11 of 13)	-10375.0	NR_037294	100526528.0		NR_037294	ENSMUSG00000105458	Mir3074-2	mir-3074-2|mmu-mir-3074-2	microRNA 3074-2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-57420861-1	chr16	57420761	57420961	+	659.0	f1_balb.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	67584.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0.509190343365888	0.556686935496116	1.69746790045707	0.529638892327399	0.512283955503579	0.816991491630545	1.8003330983387	1.23133190771626	0.826307504527256	0.616495355662481	0.97736719401417
Merged-chr16-52149534-4	chr16	52149387	52149587	+	812.238098	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033238, intron 9 of 17)	intron (NM_001033238, intron 9 of 17)	117938.0	NM_001033238	208650.0	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-20151494-4	chr11	20151406	20151606	+	927.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1-int|LTR|ERVL-MaLR	-38555.0	NM_146243	66713.0	Mm.259045	NM_146243	ENSMUSG00000020152	Actr2	4921510D23Rik|AA409782|Arp2|D6Ertd746e	ARP2 actin-related protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-88202169-4	chr7	88202071	88202271	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-75914.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-140443859-2	chr6	140443759	140443959	+	593.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144920, intron 3 of 30)	intron (NM_144920, intron 3 of 30)	19760.0	NM_144920	109135.0	Mm.247670	NM_144920	ENSMUSG00000030231	Plekha5	2810431N21Rik|AI428202|AK129423|AMH-Cre|Ayu21-9|Gt(pU21)9Imeg|Pepp2|Tg(AMH-cre)1Flor	pleckstrin homology domain containing, family A member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-97663050-4	chr1	97662947	97663147	+	977.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1029.0	NM_133825	52392.0	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-40143085-2	chr10	40142985	40143185	+	708.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028247)	promoter-TSS (NM_028247)	-831.0	NM_001114332	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-121955942-4	chr2	121955848	121956048	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290992)	promoter-TSS (NM_001290992)	-53.0	NM_001290992	329506.0	Mm.249405	NM_212450	ENSMUSG00000033411	Ctdspl2	D2Ertd485e|SCP4	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2	protein-coding	4.45512458952315	4.32968490830552	4.87079266233768	4.00804310982053	5.05567997160089	4.59720098496319	4.220494414162	4.42798587154364	0.213049994873961	0.591622869227117	0.969914559899697
Merged-chr14-120318459-2	chr14	120318359	120318559	+	707.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360376, intron 1 of 8)	intron (NM_001360376, intron 1 of 8)	12007.0	NM_001360376	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-27261032-2	chr3	27260928	27261128	+	626.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-56049.0	NM_009425	22035.0	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-11121323-5	chr19	11121213	11121413	+	836.866699	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027058, intron 1 of 6)	intron (NM_027058, intron 1 of 6)	9565.0	NM_027058	69369.0	Mm.391200	NM_027058	ENSMUSG00000024729	1700017D01Rik	-	RIKEN cDNA 1700017D01 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-73455793-4	chr2	73455690	73455890	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	-1901.0	NM_001289722	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-10727893-1	chr17	10727793	10727993	+	605.0	f0_balb.idr	intron (NM_027032, intron 2 of 4)	intron (NM_027032, intron 2 of 4)	112298.0	NM_027032	69310.0	Mm.18889	NM_027032	ENSMUSG00000037196	Pacrg	1700008H23Rik	PARK2 co-regulated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-23788534-2	chr10	23788434	23788634	+	590.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1325.0	NM_011295	20042.0	Mm.371846	NM_011295	ENSMUSG00000061983	Rps12	-	ribosomal protein S12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-109186058-2	chr8	109185958	109186158	+	769.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_126329, intron 5 of 9)	intron (NR_126329, intron 5 of 9)	63687.0	NR_151498	105243282.0	Mm.203332	NR_151498		4922502B01Rik	2900056M07Rik	RIKEN cDNA 4922502B01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-27646443-2	chr15	27646343	27646543	+	576.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-15750.0	NM_001013792	432940.0	Mm.309164	NM_001013792	ENSMUSG00000046034	Otulin	C79097|Fam105b|m3Sapc|m7-1Sapc	OTU deubiquitinase with linear linkage specificity	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-71336501-4	chr2	71336401	71336601	+	837.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172436, intron 3 of 17)	intron (NM_172436, intron 3 of 17)	31053.0	NM_172436	78830.0	Mm.30928	NM_172436	ENSMUSG00000027010	Slc25a12	2610002D09Rik|AI839531|B230107K20Rik|BB129864	solute carrier family 25 (mitochondrial carrier, Aralar), member 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90580580-4	chr2	90580502	90580702	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008982)	promoter-TSS (NM_008982)	45.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-152008890-4	chr4	152008800	152009000	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033352)	promoter-TSS (NM_001033352)	9.0	NM_001033352	242785.0	Mm.22306	NM_001033352	ENSMUSG00000073700	Klhl21	1810045K06Rik|D330008A20|mKIAA0469	kelch-like 21	protein-coding	4.72506477367883	5.51301998802244	5.44297497323234	5.2546415053801	4.86706262983001	5.48466244711326	5.39047043119647	5.52135348896836	0.0884044712182653	0.775758224714733	0.998431161219273
Merged-chr14-30618398-2	chr14	30618298	30618498	+	836.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011103, intron 1 of 17)	intron (NM_011103, intron 1 of 17)	7810.0	NM_011103	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-46891256-3	chr17	46891105	46891305	+	886.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_178385, exon 1 of 1)	exon (NM_178385, exon 1 of 1)	584.0	NM_178385	72726.0	Mm.33780	NM_178385	ENSMUSG00000036430	Tbcc	2810055C19Rik	tubulin-specific chaperone C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131975768-4	chr1	131975650	131975850	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145977, intron 1 of 4)	intron (NM_145977, intron 1 of 4)	5141.0	NM_145977	212980.0	Mm.200307	NM_145977	ENSMUSG00000026435	Slc45a3	2210413P12Rik|AU023994|AU043764|IPCA-6|PRST|Pcanap6	solute carrier family 45, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91928049-4	chr2	91927957	91928157	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007699, exon 2 of 2)	exon (NM_007699, exon 2 of 2)	3645.0	NM_001291481	17242.0	Mm.906	NM_010784	ENSMUSG00000027239	Mdk	MK|Mek	midkine	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-40447804-1	chr12	40447704	40447904	+	585.0	f0_balb.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	1751.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-139310027-3	chr4	139309912	139310112	+	562.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025337)	promoter-TSS (NM_025337)	696.0	NR_151463	212555.0	Mm.45131	NM_145384	ENSMUSG00000028744	Pqlc2	BC019216	PQ loop repeat containing 2	protein-coding	3.27597645698879	3.18746122545828	2.11440062392655	2.04824730553716	2.48693738350969	3.74653120048938	2.13274950786169	1.35684288830189	-0.0751385444458897	0.933249959309788	0.998431161219273
Merged-chr6-125529517-2	chr6	125529417	125529617	+	812.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23431.0	NM_011708	22371.0	Mm.22339	NM_011708	ENSMUSG00000001930	Vwf	6820430P06Rik|AI551257|B130011O06Rik|C630030D09|F8VWF|VWD	Von Willebrand factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-21111699-3	chr12	21111609	21111809	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001135192)	promoter-TSS (NM_001135192)	-47.0	NM_001004364	211914.0	Mm.358946	NM_001004364	ENSMUSG00000052632	Asap2	6530401G17Rik|Ddef2|Gm1523|Gm592|PAG3|PAP	ArfGAP with SH3 domain, ankyrin repeat and PH domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36746406-2	chr18	36746306	36746506	+	673.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011879, intron 2 of 19)	B4A|SINE|B4	1750.0	NM_011879	24010.0	Mm.30234	NM_011879	ENSMUSG00000024474	Ik	MuRED	IK cytokine	protein-coding	1.63249411262965	0.621590452281986	1.81591850204874	0.80970821691506	1.49260981077356	0.624863379394621	0.610133921528054	0.59726968656723	-1.56001355301395	0.333450688875488	0.833601405219443
Merged-chr1-74201223-4	chr1	74201127	74201327	+	976.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA9|LINE|L1	5393.0	NR_035449	100316687.0		NR_035449	ENSMUSG00000087820	Mir1928	mmu-mir-1928	microRNA 1928	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-151575318-3	chr1	151575197	151575397	+	671.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022018, intron 1 of 13)	intron (NM_022018, intron 1 of 13)	3924.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36019068-3	chr18	36018967	36019167	+	807.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167891, intron 9 of 9)	intron (NM_001167891, intron 9 of 9)	54237.0	NR_110349	74002.0	Mm.196944	NM_028707	ENSMUSG00000024347	Psd2	6330404E20Rik|AW125584|EFA6C	pleckstrin and Sec7 domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27050658-2	chr17	27050558	27050758	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6646.0	NM_080553	16440.0	Mm.458106	NM_080553	ENSMUSG00000042644	Itpr3	IP3R 3|Ip3r3|Itpr-3|tf	inositol 1,4,5-triphosphate receptor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128237268-1	chr10	128237168	128237368	+	541.0	f1_balb.idr	promoter-TSS (NM_011589)	promoter-TSS (NM_011589)	-798.0	NM_011589	21853.0	Mm.6458	NM_011589	ENSMUSG00000039994	Timeless	C77407|Debt69|tim	timeless circadian clock 1	protein-coding	1.35997145212296	0.917916123034937	1.74778773868987	1.28463652330729	1.06162011389684	0.922187351419627	1.97586777713467	2.22322594752755	0.991946698521729	0.435823671948356	0.907834077091723
Merged-chr16-70313495-2	chr16	70313395	70313595	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028803)	promoter-TSS (NM_028803)	-454.0	NM_028803	74185.0	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-55552630-4	chr1	55552430	55552630	+	778.200012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114663, intron 1 of 5)	L1_Mus2|LINE|L1	146584.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	-0.358311015229627	0.422021735456452	0.257734094197679	-0.351854228082923	-0.357348117839355	-0.341860511286308	-0.346878444841562	-0.351176933951368	-3.76228971469883	0.139683450079323	1
Merged-chr10-127070359-4	chr10	127070261	127070461	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025982)	promoter-TSS (NM_025982)	-100.0	NM_025982	67125.0	Mm.35650	NM_025982	ENSMUSG00000006736	Tspan31	2700085A14Rik|AW742554|Sas	tetraspanin 31	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-12161417-4	chr5	12161311	12161511	+	958.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-221755.0	NM_028882	108151.0	Mm.89313	NM_028882	ENSMUSG00000040254	Sema3d	4631426B19Rik	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-145391835-3	chr2	145391725	145391925	+	710.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053195, intron 2 of 16)	A-rich|Low_complexity|Low_complexity	149214.0	NM_053195	94249.0	Mm.217171	NM_053195	ENSMUSG00000063873	Slc24a3	NCKX3	solute carrier family 24 (sodium/potassium/calcium exchanger), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-50158684-2	chr17	50158584	50158784	+	951.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_181397, intron 2 of 9)	intron (NM_181397, intron 2 of 9)	31813.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-139470327-2	chr4	139470227	139470427	+	786.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001160319, intron 92 of 105)	intron (NM_001160319, intron 92 of 105)	-60221.0	NM_183148	212632.0	Mm.30464	NM_183148	ENSMUSG00000041025	Iffo2	C79267	intermediate filament family orphan 2	protein-coding	0.384924723867112	0.245499735187863	1.17548715172768	0.230191985225076	0.533339666755532	1.05984547862108	0.238803278643697	0.231367887139186	-0.0898666159873964	0.9621495715756	1
Merged-chr3-38488302-2	chr3	38488202	38488402	+	723.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3486.0	NM_001167883	99696.0	Mm.290937	NM_001033198	ENSMUSG00000044864	Ankrd50	AI662170|E430012K20Rik|mKIAA1223|mKIAA3019	ankyrin repeat domain 50	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-50150773-2	chr17	50150673	50150873	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_181397, intron 2 of 9)	intron (NM_181397, intron 2 of 9)	39724.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-42147316-4	chr19	42147212	42147412	+	844.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183195)	promoter-TSS (NM_183195)	-77.0	NM_183195	277010.0	Mm.206250	NM_183195	ENSMUSG00000044345	Marveld1	AI504298|Mrvldc1	MARVEL (membrane-associating) domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-82916369-2	chr18	82916269	82916469	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177464, intron 1 of 5)	intron (NM_001177464, intron 1 of 5)	1737.0	NM_001177464	329003.0	Mm.326526	NM_183033	ENSMUSG00000058881	Zfp516	C330029B10Rik|D230016L03|Zfp26l|Znf516|mKIAA0222	zinc finger protein 516	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-36862211-4	chr3	36862120	36862320	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172679)	promoter-TSS (NM_172679)	-886.0	NM_172679	229227.0	Mm.207907	NM_172679	ENSMUSG00000037270	4932438A13Rik	4732443H21|B830039D19Rik|D630029K19Rik|FSA|Kiaa1109|Tweek	RIKEN cDNA 4932438A13 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-95251420-2	chr11	95251320	95251520	+	685.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10109.0	NM_053093	93670.0	Mm.40085	NM_053093	ENSMUSG00000020872	Tac4	AW489379|PPT-C	tachykinin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-4906761-2	chr1	4906661	4906861	+	563.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER21B|LTR|ERV1	48433.0	NM_001159751	21399.0	Mm.207263	NM_011541	ENSMUSG00000033813	Tcea1	S-II	transcription elongation factor A (SII) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-65809008-1	chr1	65808908	65809108	+	663.0	f1_balb.idr	Intergenic	RMER17B|LTR|ERVK	-117514.0	NM_001360779	12969.0	Mm.275362	NM_027010	ENSMUSG00000025945	Crygf	3110001K11Rik|Cryg-2|DGcry-2|Len-2	crystallin, gamma F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-127341228-4	chr2	127341085	127341285	+	956.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291003)	promoter-TSS (NM_001291003)	-451.0	NM_001291003	215095.0	Mm.31313	NM_172539	ENSMUSG00000050468	Astl	7420700F21|C87576|Sas1b	astacin-like metalloendopeptidase (M12 family)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-130093405-2	chr10	130093305	130093505	+	605.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18993.0	NM_146671	258666.0	Mm.377628	NM_146671	ENSMUSG00000058251	Olfr822	MOR113-2	olfactory receptor 822	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-125307797-4	chr5	125307729	125307929	+	904.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205083, intron 1 of 10)	intron (NM_001205083, intron 1 of 10)	33265.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-89532641-2	chr4	89532541	89532741	+	759.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-155557.0	NM_175647	242523.0	Mm.130167	NM_175647	ENSMUSG00000043753	Dmrta1	Dmrt4	doublesex and mab-3 related transcription factor like family A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-114926964-4	chr5	114926867	114927067	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359946, intron 1 of 4)	intron (NM_001359946, intron 1 of 4)	3727.0	NM_001359945	231655.0	Mm.95479	NM_145209	ENSMUSG00000041827	Oasl1	7530414C13Rik|oasl9	2'-5' oligoadenylate synthetase-like 1	protein-coding	5.61054642418889	5.47261215796632	4.95711705202827	5.47749516086204	6.87962005450612	7.12525657099192	6.91204852364771	6.66598946584418	1.62593391618811	6.28731878617546e-13	2.1760168499e-10
Merged-chr12-76376896-4	chr12	76376789	76376989	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178744, intron 1 of 1)	intron (NM_178744, intron 1 of 1)	6623.0	NM_178744	268564.0	Mm.77065	NM_178744	ENSMUSG00000033454	Zbtb1	9430077A12|AI256369|Bsg2|C430003J21Rik	zinc finger and BTB domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-37515083-1	chr19	37514983	37515183	+	675.0	f0_balb.idr	Intergenic	Intergenic	-35335.0	NM_175353	107371.0	Mm.24865	NM_175353	ENSMUSG00000053799	Exoc6	4833405E05Rik|AW413330|C430002C19|Sec15|Sec15l1|hbd|msec15	exocyst complex component 6	protein-coding	1.89289443203853	1.89347328426472	1.94806820385213	1.65405027479081	1.70733143473505	2.03166618100651	1.1573253959316	1.66187859678454	-0.530617405881935	0.615232329617568	0.977344463026735
Merged-chr8-35567473-4	chr8	35567367	35567567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20331.0	NM_001081279	52065.0	Mm.103246	NM_001081279	ENSMUSG00000070056	Mfhas1	2310066G09Rik|D8Ertd91e	malignant fibrous histiocytoma amplified sequence 1	protein-coding	4.61955577576997	5.24683964282122	5.81992415400194	5.86057131805345	6.32937568611827	7.35710424588422	6.74741420543075	7.15552369080761	1.60559248941174	2.89992886089198e-08	2.99942642008466e-06
Merged-chr4-155469172-3	chr4	155469119	155469319	+	896.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027161, intron 1 of 4)	intron (NM_027161, intron 1 of 4)	105.0	NM_027161	69671.0	Mm.45401	NM_027161	ENSMUSG00000023153	Tmem52	2310043I08Rik	transmembrane protein 52	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-113572207-4	chr13	113572108	113572308	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46356.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-61140856-4	chr19	61140766	61140966	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_131953)	promoter-TSS (NR_131953)	-26.0	NR_131954	414758.0	Mm.100056	NM_001001737	ENSMUSG00000074733	Zfp950	5830428H23Rik|AU016073|BC055757|Gm34518|Zfp826|mszf84	zinc finger protein 950	protein-coding	4.4519009652596	4.11555849489243	5.07801371054716	4.45164421590998	4.31659515644591	4.96905727578993	4.650532874929	3.80699429454066	-0.0996887184984946	0.810220473138096	0.998431161219273
Merged-chr9-65133979-2	chr9	65133879	65134079	+	839.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290315, intron 18 of 19)	(CA)n|Simple_repeat|Simple_repeat	-7175.0	NM_008988	19289.0	Mm.41529	NM_008988	ENSMUSG00000032394	Igdcc3	2810401C09Rik|AI851425|Punc|WI-14920	immunoglobulin superfamily, DCC subclass, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-97383995-2	chr15	97383895	97384095	+	898.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172293, intron 5 of 5)	intron (NM_172293, intron 5 of 5)	-136708.0	NM_001164602	105827.0	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-176818913-4	chr1	176818812	176819012	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357390, intron 1 of 18)	intron (NM_001357390, intron 1 of 18)	4252.0	NM_029756	76816.0	Mm.171399	NM_029756	ENSMUSG00000026504	Sdccag8	2700048G21Rik|5730470G24Rik|Cccap	serologically defined colon cancer antigen 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-84345150-4	chr3	84345050	84345250	+	999.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34771.0	NR_040752	75309.0	Mm.159497	NR_040752	ENSMUSG00000104004	4930565D16Rik	-	RIKEN cDNA 4930565D16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115127881-2	chr11	115127781	115127981	+	635.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001169153, intron 1 of 6)	intron (NM_001169153, intron 1 of 6)	6111.0	NM_001347648	246746.0	Mm.277387	NM_145634	ENSMUSG00000047798	Cd300lf	CLIM1|CLM-1|CLM1|Digr2|F730004D16Rik|IREM1|IgSF13|LMIR3|Pigr3	CD300 molecule like family member F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-126255641-4	chr4	126255552	126255752	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145970, intron 1 of 16)	intron (NM_001145970, intron 1 of 16)	667.0	NM_144941	245877.0	Mm.266716	NM_144941	ENSMUSG00000028849	Map7d1	AV028413|BC019977|Mtap7d1|Parcc1|Rprc1|mKIAA1187	MAP7 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-8917385-4	chr4	8917274	8917474	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	166050.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	6.93319778410508	7.59283345208832	7.44200315691339	7.18387557382439	6.80278650473703	7.04140911480606	6.85707890634003	6.65066093746334	-0.486523789271126	0.00862168830740894	0.097957401810883
Merged-chr12-78791493-3	chr12	78791323	78791523	+	894.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019579, intron 1 of 14)	intron (NM_019579, intron 1 of 14)	42476.0	NM_019579	56217.0	Mm.425777	NM_019579	ENSMUSG00000021112	Mpp5	3830420B02Rik|AI255216|AI644496|Pals1	membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16783472-3	chr7	16783372	16783572	+	782.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009201, intron 1 of 8)	intron (NM_009201, intron 1 of 8)	2126.0	NM_009201	20514.0	Mm.1056	NM_009201	ENSMUSG00000001918	Slc1a5	AAAT|ASCT2|ATBO|M7V1|M7VS1|R16|RDRC|Slc1a7	solute carrier family 1 (neutral amino acid transporter), member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-23839852-3	chr14	23839757	23839957	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253364, intron 1 of 27)	intron (NM_001253364, intron 1 of 27)	164348.0	NM_001253375	16531.0	Mm.343607	NM_010610	ENSMUSG00000063142	Kcnma1	5730414M22Rik|BKCa|MaxiK|Slo|Slo1|mSlo|mSlo1	potassium large conductance calcium-activated channel, subfamily M, alpha member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70508694-1	chr8	70508594	70508794	+	561.0	f1_c57bl6.idr	intron (NM_001348227, intron 3 of 3)	intron (NM_001348227, intron 3 of 3)	1251.0	NM_001348229	22186.0	Mm.297372	NM_019883	ENSMUSG00000090137	Uba52	Cep52|D8Ertd21e|Gm1863|Rps27a|Ubb|Ubc	ubiquitin A-52 residue ribosomal protein fusion product 1	protein-coding	0.583394740507028	0.990954720632048	0.603801008352849	1.16643051137203	1.28463916957858	0.999401156148041	0.605971020236193	1.2767163494499	1.00530340077271	0.526460790505256	0.94877971795044
Merged-chr14-54416991-2	chr14	54416891	54417091	+	706.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011405, intron 1 of 11)	B4A|SINE|B4	688.0	NM_001253679	20540.0	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-113812865-4	chr5	113812765	113812965	+	950.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-12513.0	NM_146162	231633.0	Mm.41681	NM_146162	ENSMUSG00000054675	Tmem119	AW208946|BC025600|obif	transmembrane protein 119	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-21566399-4	chr17	21566294	21566494	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357347)	promoter-TSS (NM_001357347)	-584.0	NM_001002008	381066.0	Mm.441097	NM_001002008	ENSMUSG00000067931	Zfp948	-	zinc finger protein 948	protein-coding	6.37358320987776	7.29947508323326	6.69160082184958	6.33547408209981	5.17218662811404	5.80408834742227	5.36546266855471	4.69647638565116	-1.55706162607301	5.72784744710101e-08	5.48319523965302e-06
Merged-chr10-63023301-3	chr10	63023194	63023394	+	986.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001079824, intron 1 of 9)	CpG	555.0	NM_001079824	432467.0	Mm.274784	NM_001079824	ENSMUSG00000020069	Hnrnph3	AA693301|AI666703|Hnrph3	heterogeneous nuclear ribonucleoprotein H3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115073386-2	chr11	115073286	115073486	+	919.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11347.0	NM_172050	217306.0	Mm.222667	NM_172050	ENSMUSG00000048498	Cd300e	BC034097|CLM2|Cd300le|TREM5	CD300E molecule	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-83724737-4	chr7	83724607	83724807	+	836.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360088, intron 1 of 18)	intron (NM_001360088, intron 1 of 18)	7691.0	NM_001360087	16170.0	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-36173517-2	chr15	36173417	36173617	+	921.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023127)	promoter-TSS (NM_023127)	-493.0	NM_023127	17749.0	Mm.27375	NM_023127	ENSMUSG00000045996	Polr2k	ABC10-alpha|MafY|Mt1a|RPABC4|RPB10alpha|RPB12|RPB7.0	polymerase (RNA) II (DNA directed) polypeptide K	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-64261791-4	chr15	64261685	64261885	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 3 of 28)	intron (NM_001276461, intron 3 of 28)	50888.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-56738562-2	chr19	56738462	56738662	+	773.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16190.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-40899699-3	chr4	40899604	40899804	+	619.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-20352.0	NM_011463	20731.0	Mm.25246	NM_011463	ENSMUSG00000028415	Spink4	MPGC60	serine peptidase inhibitor, Kazal type 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-57122709-2	chr16	57122609	57122809	+	620.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_138599, intron 1 of 11)	intron (NM_138599, intron 1 of 11)	995.0	NM_138599	28185.0	Mm.196933	NM_138599	ENSMUSG00000022752	Tomm70a	2610044B22Rik|D16Ium22|D16Ium22e|D16Wsu109e|Tom70|Tomm70|mKIAA0719	translocase of outer mitochondrial membrane 70A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-31564824-3	chr17	31564756	31564956	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016670)	promoter-TSS (NM_016670)	83.0	NM_016670	18771.0	Mm.259295	NM_016670	ENSMUSG00000006705	Pknox1	D17Wsu76e|PREP1	Pbx/knotted 1 homeobox	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90745396-4	chr2	90745259	90745459	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018828)	promoter-TSS (NM_018828)	-11.0	NM_018828	55935.0	Mm.489638	NM_018828	ENSMUSG00000008200	Fnbp4	FBP30|Fnbp30|mKIAA1014	formin binding protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118462098-2	chr11	118461998	118462198	+	772.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7103.0	NR_045902	100126224.0	Mm.441989	NR_045902	ENSMUSG00000086514	Gm11747	-	predicted gene 11747	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84647480-2	chr8	84647382	84647582	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15370.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	0.531661044602267	1.51250168264248	0.945555559995124	0.747166747293816	0.534087321667493	1.52778450704271	0.560018328574657	1.06176418179095	0.0103434631614403	0.994818993772493	0.998431161219273
Merged-chr19-48063500-4	chr19	48063408	48063608	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	125796.0	NM_001163267	381229.0	Mm.300553	NM_001163267	ENSMUSG00000046585	Cfap58	Ccdc147|Gm969	cilia and flagella associated protein 58	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-75445380-1	chr9	75445280	75445480	+	709.0	f1_c57bl6.idr	exon (NM_001039522, exon 2 of 12)	exon (NM_001039522, exon 2 of 12)	3856.0	NM_001039522	235497.0	Mm.41508	NM_001006122	ENSMUSG00000042487	Leo1	Gm185	Leo1, Paf1/RNA polymerase II complex component	protein-coding	-1.8418762459921	-1.8125357239735	-1.82140854000656	-1.82869693527674	-1.56059678980999	-1.8106129477253	-1.81939992894326	-1.82739231600805	1.3620893379502	0.699511506488145	1
Merged-chr12-32765863-4	chr12	32765747	32765947	+	984.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54488.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	0.801390500446356	1.04801954819874	0.551685350010268	0.969069863862388	0.808406224846023	1.05787525096463	0.553428997184787	0.975180705120258	0.036124152016559	0.981243300161787	1
Merged-chr3-83056059-2	chr3	83055959	83056159	+	663.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016784, intron 1 of 14)	L2|LINE|L2	521.0	NM_016784	53317.0	Mm.286349	NM_016784	ENSMUSG00000027998	Plrg1	AA958940|C80566|Tango4	pleiotropic regulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-62946143-2	chr14	62946045	62946245	+	892.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175546, intron 7 of 11)	B4A|SINE|B4	38365.0	NM_001037751	432867.0	Mm.99387	NM_001037751	ENSMUSG00000075574	Defb48	Defb42|EG432867	defensin beta 48	protein-coding	1.1902173295337	1.61298018755268	0.905359953196489	1.61570079389089	1.43926826736459	1.62599418472769	0.908584085674087	1.62479379942993	0.237314336175602	0.853889967676978	0.998431161219273
Merged-chr13-81025504-4	chr13	81025352	81025552	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015587, intron 1 of 1)	IAPEY3-int|LTR|ERVK	61378.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81244786-4	chr10	81244695	81244895	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034895, intron 8 of 17)	intron (NM_001034895, intron 8 of 17)	-8140.0	NM_001285855	17179.0	Mm.2918	NM_010768	ENSMUSG00000004933	Matk	CHK|HYL|Ntk|p56ntk	megakaryocyte-associated tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97663419-8	chr11	97663247	97663447	+	913.2589109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_139311)	promoter-TSS (NM_139311)	-65.0	NM_139311	246198.0	Mm.23685	NM_139311	ENSMUSG00000038437	Mllt6	AI315037|Af17	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-116405303-4	chr12	116405223	116405423	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028421)	promoter-TSS (NR_028421)	-79.0	NM_133762	76044.0	Mm.491196	NM_133762	ENSMUSG00000042029	Ncapg2	5830426I05Rik|Luzp5|Mtb|mCAP-G2	non-SMC condensin II complex, subunit G2	protein-coding	7.63295791174171	8.10233158570513	7.34848405926236	7.39616016029673	7.38992706019047	7.69409667726716	7.79605490519366	6.93497715720615	-0.168696087142449	0.401779323264802	0.887117091875413
Merged-chr3-147070773-1	chr3	147070673	147070873	+	541.0	f1_c57bl6.idr	Intergenic	Intergenic	218406.0	NM_001302957	70892.0	Mm.187793	NM_027594	ENSMUSG00000036745	Ttll7	1110049N09Rik|4921517B04Rik|C630030B20|mTTLL7	tubulin tyrosine ligase-like family, member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-17256351-2	chr11	17256251	17256451	+	622.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-1196.0	NM_020558	57316.0	Mm.287982	NM_020558	ENSMUSG00000000581	C1d	1110036E10Rik|AI875855|SUN-CoR	C1D nuclear receptor co-repressor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-73839793-4	chr18	73839685	73839885	+	869.31665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19600.0	NM_027741	71263.0	Mm.126220	NM_027741	ENSMUSG00000064036	Mro	4930507C04Rik|4933435E20Rik	maestro	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-60802690-2	chr11	60802590	60802790	+	673.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009171, intron 3 of 11)	RMER6B|LTR|ERVK	8575.0	NM_009171	20425.0	Mm.364956	NM_009171	ENSMUSG00000020534	Shmt1	AI324848|AI385541|C81125|Shmt|mshmt|mshmt1|mshmt2	serine hydroxymethyltransferase 1 (soluble)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-102577729-7	chr4	102577676	102577876	+	767.273804	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019840, intron 6 of 14)	intron (NM_019840, intron 6 of 14)	7716.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-67847328-3	chr9	67847263	67847463	+	943.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177184, intron 1 of 84)	intron (NM_177184, intron 1 of 84)	6967.0	NM_177184	320528.0	Mm.241454	NM_177184	ENSMUSG00000035284	Vps13c	AI552542|AV026040|C230055H22Rik|W51662|chorein	vacuolar protein sorting 13C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-94252171-1	chr2	94252071	94252271	+	593.0	f0_balb.idr	Intergenic	Intergenic	9228.0	NR_030431	735259.0		NR_030431	ENSMUSG00000076335	Mir670	Mirn670|mir-670|mmu-mir-670	microRNA 670	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-143100191-4	chr6	143100089	143100289	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029897)	promoter-TSS (NM_029897)	-37.0	NM_001109688	74741.0	Mm.130260	NM_029081	ENSMUSG00000030279	C2cd5	5730419I09Rik|C030008B15Rik|CDP138	C2 calcium-dependent domain containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-17880336-1	chr17	17880236	17880436	+	909.3333130000001	f1_c57bl6.idr	intron (NM_013521, intron 1 of 1)	B4A|SINE|B4	3603.0	NM_013521	14293.0	Mm.56951	NM_013521	ENSMUSG00000045551	Fpr1	FPR|LXA4R|fMLF-R	formyl peptide receptor 1	protein-coding	2.32004310664064	2.27885353161924	1.36708009599455	1.67349936585637	1.4588870046526	1.41478387479541	2.21601674950187	1.52542850009196	-0.771567466566802	0.462619150755495	0.921194606787634
Merged-chr1-134646478-2	chr1	134646378	134646578	+	642.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009307)	promoter-TSS (NM_009307)	-134.0	NM_009307	20980.0	Mm.5102	NM_009307	ENSMUSG00000026452	Syt2	IP4BP|R74640|mKIAA4194|sytII	synaptotagmin II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91399120-4	chr16	91399015	91399215	+	974.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347258, intron 7 of 7)	intron (NM_001347258, intron 7 of 7)	-7120.0	NM_008349	16155.0	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-103547893-4	chr14	103547827	103548027	+	840.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022886, intron 8 of 30)	B1_Mm|SINE|Alu	34586.0	NM_022886	64929.0	Mm.244003	NM_022886	ENSMUSG00000022123	Scel	9230114I02Rik	sciellin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16403536-6	chr7	16403443	16403643	+	942.305542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198631, intron 1 of 13)	intron (NM_198631, intron 1 of 13)	2347.0	NM_198631	330474.0	Mm.333594	NM_198631	ENSMUSG00000059273	Zc3h4	Bwq1|Gm768|Kiaa1064-hp|mKIAA1064	zinc finger CCCH-type containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-143412764-4	chr4	143412670	143412870	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001355724, exon 1 of 4)	5' UTR (NM_001355724, exon 1 of 4)	344.0	NM_001355724	242736.0	Mm.275953	NM_172877	ENSMUSG00000046862	Pramef8	4732496O08Rik|AU023234	PRAME family member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-30941273-2	chr8	30941134	30941334	+	804.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-148293.0	NM_025869	66959.0	Mm.23916	NM_025869	ENSMUSG00000039661	Dusp26	2310043K02Rik|Skrp3	dual specificity phosphatase 26 (putative)	protein-coding	2.77674908827927	3.33077768729635	1.32835775248528	2.93036744704783	2.37899568365442	2.11140128275051	1.33776073872939	2.39467062282561	-1.32901427207584	0.159170942397847	0.618391829904723
Merged-chr11-34220863-4	chr11	34220759	34220959	+	873.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-12770.0	NM_023907	14233.0	Mm.32926	NM_023907	ENSMUSG00000047861	Foxi1	5830401E05Rik|FREAC6|Fkh10|HFH-3|Hfh3	forkhead box I1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124540003-2	chr5	124539903	124540103	+	617.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019770)	promoter-TSS (NM_019770)	-788.0	NM_019770	56334.0	Mm.325307	NM_019770	ENSMUSG00000029390	Tmed2	1110032D12Rik|1810020N21Rik|Rnp24|Sid394|p24beta1	transmembrane p24 trafficking protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117779092-4	chr11	117778985	117779185	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145439, intron 2 of 19)	intron (NM_145439, intron 2 of 19)	563.0	NR_154387	217353.0	Mm.286963	NM_145439	ENSMUSG00000025572	Tmc6	D11Ertd204e|EVER1	transmembrane channel-like gene family 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-54317431-4	chr3	54317338	54317538	+	900.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253682, intron 10 of 11)	intron (NM_001253682, intron 10 of 11)	-43669.0	NM_001198766	50706.0	Mm.236067	NM_015784	ENSMUSG00000027750	Postn	A630052E07Rik|AI747096|OSF-2|Osf2|PLF|PN	periostin, osteoblast specific factor	protein-coding	-1.84436392554074	-1.52091821270385	-1.82290882857571	-1.83054882630441	-1.84220491470818	-1.81159244170985	-1.82080331928423	-1.82918127036376	-1.56828060379516	0.655578384384393	1
Merged-chr2-146848113-2	chr2	146848027	146848227	+	868.216675	f0_balb.idr|f1_balb.idr	Intergenic	LTR16C|LTR|ERVL	-7762.0	NM_001033298	228730.0	Mm.292352	NM_001033298	ENSMUSG00000074749	Kiz	Gm114|Ncrna00153|Plk1s1	kizuna centrosomal protein	protein-coding	3.12439220331895	4.06877014081116	2.47713101611114	2.72445270977039	4.47706317706876	4.52151680455798	3.52395319141991	3.49671250340327	1.2358866589738	0.036475207225217	0.271036120952739
Merged-chr9-113724804-2	chr9	113724677	113724877	+	666.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16518.0	NM_011052	18571.0	Mm.29816	NM_011052	ENSMUSG00000032504	Pdcd6ip	AI480591|AW544830|Aip1|Alix|C76364|Eig2|mKIAA1375	programmed cell death 6 interacting protein	protein-coding	-0.502885723660215	-0.628855741220518	-0.197417431899505	-0.228858720965115	-0.637799360841664	-0.628146158177893	-0.631303637753695	-0.633985730823052	-3.19372492772496	0.228367541403163	1
Merged-chr9-97115708-4	chr9	97115616	97115816	+	955.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4675.0	NM_138756	192287.0	Mm.228067	NM_138756	ENSMUSG00000032449	Slc25a36	C330005L02Rik	solute carrier family 25, member 36	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152557412-2	chr1	152557312	152557512	+	628.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001346119, exon 5 of 18)	exon (NM_001346119, exon 5 of 18)	67805.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-3163821-2	chr11	3163691	3163891	+	1000.0	f0_balb.idr|f1_balb.idr	intron (NM_030207, intron 9 of 32)	RLTR51B_Mm|LTR|ERVK?	29672.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-143074161-4	chr6	143074095	143074295	+	972.4249880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362117, intron 7 of 26)	intron (NM_001362117, intron 7 of 26)	25957.0	NM_001362118	74741.0	Mm.130260	NM_029081	ENSMUSG00000030279	C2cd5	5730419I09Rik|C030008B15Rik|CDP138	C2 calcium-dependent domain containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-82175000-4	chr11	82174904	82175104	+	907.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4808.0	NM_011329	20290.0	Mm.1283	NM_011329	ENSMUSG00000020702	Ccl1	BF534335|I-309|P500|Scya1|Tca-3|Tca3	chemokine (C-C motif) ligand 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-62551644-4	chr11	62551536	62551736	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001313984)	promoter-TSS (NM_001313984)	-95.0	NM_001313984	22187.0	Mm.371592	NM_011664	ENSMUSG00000019505	Ubb	AL033289|Rps27a|Uba52|Ubb2|Ubc	ubiquitin B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-37509928-4	chr19	37509839	37510039	+	973.633301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40479.0	NM_175353	107371.0	Mm.24865	NM_175353	ENSMUSG00000053799	Exoc6	4833405E05Rik|AW413330|C430002C19|Sec15|Sec15l1|hbd|msec15	exocyst complex component 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-5157343-1	chr15	5157243	5157443	+	735.0	f1_balb.idr	intron (NM_001013367, intron 1 of 8)	B1F|SINE|Alu	13482.0	NM_001355640	105787.0	Mm.207004	NM_001013367	ENSMUSG00000050697	Prkaa1	AI194361|AI450832|AL024255|AMPKalpha1|C130083N04Rik	protein kinase, AMP-activated, alpha 1 catalytic subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-94328961-2	chr11	94328861	94329061	+	756.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_027799, intron 1 of 4)	intron (NM_027799, intron 1 of 4)	960.0	NM_146024	71452.0	Mm.141054	NM_027799	ENSMUSG00000020864	Ankrd40	1110011C06Rik|5530600A18Rik|Gcap15	ankyrin repeat domain 40	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-123572988-4	chr4	123572867	123573067	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199137, intron 1 of 92)	intron (NM_001199137, intron 1 of 92)	-43453.0	NR_105824	102465214.0		NR_105824	ENSMUSG00000099005	Mir6398	Gm27657|mmu-mir-6398	microRNA 6398	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106192057-2	chr11	106191957	106192157	+	888.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252449, intron 1 of 10)	B1_Mur3|SINE|Alu	1546.0	NM_001252448	72149.0	Mm.403722	NM_028126	ENSMUSG00000069631	Strada	2610019A05Rik|6030402H20Rik|AI480680|E130112C09Rik	STE20-related kinase adaptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-77523305-4	chr10	77523212	77523412	+	935.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7036.0	NM_008404	16414.0	Mm.1137	NM_008404	ENSMUSG00000000290	Itgb2	2E6|AI528527|Cd18|LAD|LCAMB|Lfa1|MF17	integrin beta 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135702787-4	chr5	135702690	135702890	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008898, intron 1 of 15)	L1MC4a|LINE|L1	13645.0	NM_008898	18984.0	Mm.3863	NM_008898	ENSMUSG00000005514	Por	4933424M13Rik|CPR|CYPOR|P450R	P450 (cytochrome) oxidoreductase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-137504943-2	chr5	137504843	137505043	+	934.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-2514.0	NM_028753	74097.0	Mm.290242	NM_028753	ENSMUSG00000029715	Pop7	0610037N12Rik|AI852017|Rpp20	processing of precursor 7, ribonuclease P family, (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-137410263-2	chr6	137410163	137410363	+	994.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164403)	promoter-TSS (NM_001164403)	-458.0	NM_001164402	19277.0	Mm.186361	NM_011216	ENSMUSG00000030223	Ptpro	D28|GLEPP1|PTPBK|PTPROt|PTPU2|PTPoc|PTPphi|Ptpn15|R-PTP-O	protein tyrosine phosphatase, receptor type, O	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-69885608-4	chr2	69885504	69885704	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029280)	promoter-TSS (NM_029280)	11.0	NM_029280	75422.0	Mm.10508	NM_029280	ENSMUSG00000051730	Mettl5	2810410A08Rik	methyltransferase like 5	protein-coding	2.37997443172608	3.86906923897378	3.87136508266611	3.25084294665762	2.40314399102352	3.58471417692509	4.39626598303373	3.26818999487232	0.205530365601034	0.754080695195362	0.998431161219273
Merged-chr15-28026134-4	chr15	28026045	28026245	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081302)	promoter-TSS (NM_001081302)	-297.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-107888169-2	chr13	107888069	107888269	+	944.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 2 of 14)	intron (NM_145456, intron 2 of 14)	1895.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-21188905-3	chr10	21188806	21189006	+	745.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_152786)	TTS (NR_152786)	1962.0	NR_152786	102636600.0	Mm.227606	NR_152786	ENSMUSG00000111005	Gm33619	-	predicted gene, 33619	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-127251841-4	chr2	127251747	127251947	+	859.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175145, intron 2 of 3)	intron (NM_175145, intron 2 of 3)	3872.0	NM_175145	69470.0	Mm.200889	NM_175145	ENSMUSG00000034850	Tmem127	2310003P10Rik|AI314202|AI317350	transmembrane protein 127	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-34596002-4	chr18	34595893	34596093	+	885.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177773, exon 1 of 6)	exon (NM_177773, exon 1 of 6)	1475.0	NM_177773	271508.0	Mm.417609	NM_177773	ENSMUSG00000049357	4933408B17Rik	-	RIKEN cDNA 4933408B17 gene	protein-coding	0.487770639265366	0.747052079622518	0.719012437149294	0.502496126829134	1.05352533244155	1.46291487781144	1.39498943388739	0.504027242655282	3.05111488498738	0.0713173355036592	0.402476665744545
Merged-chr17-28328358-7	chr17	28328266	28328466	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011287)	promoter-TSS (NM_011287)	-105.0	NM_011287	19896.0	Mm.336955	NM_011287	ENSMUSG00000037805	Rpl10a	CsA-19|Nedd6	ribosomal protein L10A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165060093-4	chr2	165059987	165060187	+	937.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027852, intron 1 of 7)	RSINE1|SINE|B4	4451.0	NM_011611	21939.0	Mm.271833	NM_011611	ENSMUSG00000017652	Cd40	AI326936|Bp50|GP39|HIGM1|IGM|IMD3|T-BAM|TRAP|Tnfrsf5|p50	CD40 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-62026761-4	chr14	62026667	62026867	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	266212.0	NM_173419	239133.0	Mm.127330	NM_173419	ENSMUSG00000048281	Dleu7	BC038059	deleted in lymphocytic leukemia, 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127206139-2	chr7	127206039	127206239	+	668.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144522, intron 1 of 8)	intron (NM_144522, intron 1 of 8)	2329.0	NM_144522	68449.0	Mm.41420	NM_144522	ENSMUSG00000042492	Tbc1d10b	1110003P22Rik|C87963	TBC1 domain family, member 10b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-107044583-4	chr7	107044501	107044701	+	760.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8465.0	NM_147034	259036.0	Mm.377801	NM_147034	ENSMUSG00000073898	Olfr713	MOR263-1|P3	olfactory receptor 713	protein-coding	2.50370907299316	2.20669680685814	2.46927079844535	3.1898238980167	1.04475404068749	1.16125813829711	1.99742714609955	1.09355875889427	-3.34475923288178	0.00257955608451884	0.0404392603249874
Merged-chr16-80579231-2	chr16	80579131	80579331	+	616.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	579855.0	NM_030146	78654.0		NM_030146		1700066C05Rik	-	RIKEN cDNA 1700066C05 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19797386-4	chr7	19797297	19797497	+	868.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023224)	promoter-TSS (NM_023224)	-588.0	NM_023224	80794.0	Mm.81698	NM_023224	ENSMUSG00000040525	Cblc	2310076I21Rik|2310079L19Rik|Cbl3	Casitas B-lineage lymphoma c	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98355927-3	chr11	98355832	98356032	+	713.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001313970, intron 5 of 6)	intron (NM_001313970, intron 5 of 6)	2351.0	NR_045477	69338.0	Mm.398308	NR_045477	ENSMUSG00000085944	1700003D09Rik	-	RIKEN cDNA 1700003D09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-101186468-2	chr4	101186368	101186568	+	609.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_146145, intron 4 of 24)	intron (NM_146145, intron 4 of 24)	78814.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-35030610-3	chr7	35030517	35030717	+	681.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008820, intron 11 of 14)	intron (NM_008820, intron 11 of 14)	25949.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-57536789-4	chr16	57536706	57536906	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 4 of 4)	intron (NM_001040397, intron 4 of 4)	-12436.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119035919-2	chr11	119035819	119036019	+	827.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4994.0	NM_013926	30951.0	Mm.99953	NM_013926	ENSMUSG00000025578	Cbx8	Pc3	chromobox 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-55819701-4	chr16	55819617	55819817	+	887.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159395, intron 2 of 12)	intron (NM_001159395, intron 2 of 12)	2421.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128376048-2	chr2	128375948	128376148	+	999.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_028591, intron 1 of 1)	intron (NR_028591, intron 1 of 1)	53303.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34127575-2	chr17	34127487	34127687	+	808.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360530, intron 1 of 5)	intron (NM_001360530, intron 1 of 5)	2069.0	NM_001360530	14998.0	Mm.16373	NM_010386	ENSMUSG00000037649	H2-DMa	H-2Ma|H2-Ma	histocompatibility 2, class II, locus DMa	protein-coding	1.07656681530657	0.698391855433653	0.880280754729774	1.0104988629869	0.828981413929569	1.58469979224303	1.04954568672594	1.26379185661561	1.349621118802	0.32943018516425	0.831942889324137
Merged-chr17-53480600-2	chr17	53480500	53480700	+	850.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025887, intron 1 of 5)	intron (NM_025887, intron 1 of 5)	1366.0	NM_025887	271457.0	Mm.329123	NM_025887	ENSMUSG00000017831	Rab5a	2410015H04Rik|AI663973|AU021172|nnyRab5a	RAB5A, member RAS oncogene family	protein-coding	1.68595732086578	0.746584574463096	0.0834397673288499	0.304241766604035	0.0606862799054089	0.097771623251622	0.0860550362665225	0.0757972771069716	-4.66515602674686	0.0153593792912023	0.147582887935807
Merged-chr2-26907858-2	chr2	26907758	26907958	+	582.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011513, exon 3 of 3)	3' UTR (NM_011513, exon 3 of 3)	2784.0	NM_011513	20933.0	Mm.397932	NM_011513	ENSMUSG00000015776	Med22	AW212655|AW558812|Surf-5|Surf5	mediator complex subunit 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-57995903-4	chr15	57995855	57996055	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173862, intron 3 of 3)	L1MB8|LINE|L1	10052.0	NM_173862	239463.0	Mm.221241	NM_173862	ENSMUSG00000051225	Fam83a	-	family with sequence similarity 83, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-129276678-4	chr6	129276598	129276798	+	986.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1329.0	NM_001033122	12515.0	Mm.74745	NM_001033122	ENSMUSG00000030156	Cd69	5830438K24Rik|AI452015|AIM|VEA	CD69 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-8216327-4	chr14	8216218	8216418	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001305937)	promoter-TSS (NM_001305937)	70.0	NM_001305937	71393.0	Mm.292712	NM_027782	ENSMUSG00000021752	Kctd6	5430433B02Rik|AU044285	potassium channel tetramerisation domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19561757-2	chr7	19561657	19561857	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_199149, intron 1 of 12)	CpG	641.0	NM_199149	232947.0	Mm.219662	NM_199149	ENSMUSG00000051403	Ppp1r37	Gm158|Lrrc68	protein phosphatase 1, regulatory subunit 37	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6336752-2	chr19	6336652	6336852	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001168488, exon 3 of 10)	exon (NM_001168488, exon 3 of 10)	1713.0	NM_008583	17283.0	Mm.12917	NM_008583	ENSMUSG00000024947	Men1	AW045611	multiple endocrine neoplasia 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24021510-1	chr17	24021410	24021610	+	635.0	f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-16733.0	NM_175440	213171.0	Mm.133083	NM_175440	ENSMUSG00000050762	Prss27	CAPH2|Mpn|marapsin	protease, serine 27	protein-coding	1.24143842468695	0.903038955056784	0.867662289568847	0.700152392503252	0.91121335874994	0.551604069483757	0.543614930240286	0.967691392860518	-1.00087615534088	0.519942259126275	1
Merged-chr13-55216604-2	chr13	55216504	55216704	+	658.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008739, intron 2 of 22)	intron (NM_008739, intron 2 of 22)	6822.0	NM_008739	18193.0	Mm.168965	NM_008739	ENSMUSG00000021488	Nsd1	AI528500|KMT3B	nuclear receptor-binding SET-domain protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-6416175-2	chr11	6416075	6416275	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008907, intron 1 of 4)	CpG	305.0	NM_008907	268373.0	Mm.5246	NM_008907	ENSMUSG00000071866	Ppia	2700098C05|Cphn|CyP-18|CypA	peptidylprolyl isomerase A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-121191792-4	chr6	121191691	121191891	+	915.837524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304773, intron 4 of 4)	intron (NM_001304773, intron 4 of 4)	8124.0	NM_001304773	74043.0	Mm.491240	NM_028730	ENSMUSG00000067825	Pex26	4632428M11Rik	peroxisomal biogenesis factor 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-19794672-1	chr13	19794572	19794772	+	989.0	f0_balb.idr	intron (NM_181754, intron 2 of 4)	ORR1B1|LTR|ERVL-MaLR	29585.0	NM_181754	353346.0	Mm.239268	NM_181754	ENSMUSG00000053101	Gpr141	PGR13	G protein-coupled receptor 141	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-10976273-4	chr16	10976134	10976334	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019980, intron 1 of 3)	intron (NM_019980, intron 1 of 3)	16887.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-77497672-2	chr8	77497572	77497772	+	757.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_030113, intron 1 of 22)	intron (NM_030113, intron 1 of 22)	-19384.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-13044101-2	chr17	13044001	13044201	+	736.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8179.0	NM_001013832	436440.0	Mm.335670	NM_001013832	ENSMUSG00000071311	Gpr31b	12-HETER|GPR31c(t)|Gpr31|Gpr31c	G protein-coupled receptor 31, D17Leh66b region	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-72329132-2	chr4	72329032	72329232	+	549.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	127888.0	NR_027923	68285.0	Mm.37541	NR_027923		C630043F03Rik	AI851307	RIKEN cDNA C630043F03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-45661515-4	chr14	45661477	45661677	+	917.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3434.0	NM_001042719	114874.0	Mm.121918	NM_176845	ENSMUSG00000037697	Ddhd1	Mir5131|PA-PLA1	DDHD domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-137416225-3	chr7	137416125	137416325	+	933.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPEz-int|LTR|ERVK	-5469.0	NM_029886	77252.0	Mm.29184	NM_029886	ENSMUSG00000040139	9430038I01Rik	-	RIKEN cDNA 9430038I01 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-98617407-2	chr15	98617307	98617507	+	912.8333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9774.0	NM_007405	11512.0	Mm.157091	NM_007405	ENSMUSG00000022994	Adcy6	AC6|mKIAA0422	adenylate cyclase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-24838889-4	chr7	24838812	24839012	+	900.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045096, intron 10 of 11)	intron (NR_045096, intron 10 of 11)	20117.0	NR_045096	545936.0	Mm.376228	NR_045096	ENSMUSG00000011350	Gm5893	EG545936|Gm477	predicted gene 5893	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-84037102-4	chr3	84036950	84037150	+	958.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172681, intron 2 of 34)	intron (NM_172681, intron 2 of 34)	3111.0	NM_172681	229473.0	Mm.28838	NM_172681	ENSMUSG00000033767	Tmem131l	D930015E06Rik|Kiaa0922|mKIAA0922	transmembrane 131 like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-88653764-4	chr1	88653656	88653856	+	910.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48435.0	NM_177305	320982.0	Mm.27968	NM_177305	ENSMUSG00000049866	Arl4c	A630084M22Rik|Arl7|LAK	ADP-ribosylation factor-like 4C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-146674561-3	chr6	146674451	146674651	+	889.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	17333.0	NR_046277	74925.0	Mm.386304	NR_046277	ENSMUSG00000085238	4930479D17Rik	-	RIKEN cDNA 4930479D17 gene	ncRNA	2.75266603143875	3.21612867021895	4.15609049590114	2.0279610537539	2.96607637069189	3.59095810305053	3.39576058469223	1.80647210393795	-0.288808498541957	0.705173953814521	0.998431161219273
Merged-chr5-114175793-4	chr5	114175715	114175915	+	911.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133904, intron 1 of 51)	intron (NM_133904, intron 1 of 51)	10297.0	NM_133904	100705.0	Mm.81793	NM_133904	ENSMUSG00000042010	Acacb	AI597064|AW743042|Acc2|Accb	acetyl-Coenzyme A carboxylase beta	protein-coding	2.80201817585297	2.92373790349664	1.97878866756712	2.35681709023547	4.77485189713119	4.90552236311548	5.14451932387151	4.55237542166347	3.28196702084504	3.98258992352811e-10	7.16746708537354e-08
Merged-chr16-76284234-2	chr16	76284134	76284334	+	641.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	88815.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167493931-2	chr2	167493831	167494031	+	735.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030743, intron 1 of 7)	intron (NM_030743, intron 1 of 7)	-1057.0	NM_001356523	263876.0	Mm.34342	NM_170756	ENSMUSG00000047030	Spata2	AI504642|mKIAA0757	spermatogenesis associated 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-44004452-4	chr10	44004353	44004553	+	867.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_172393, exon 1 of 20)	5' UTR (NM_172393, exon 1 of 20)	393.0	NM_172393	11630.0	Mm.292082	NM_172393	ENSMUSG00000019866	Crybg1	AI462491|AI463325|Aim1	crystallin beta-gamma domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-161735000-4	chr1	161734871	161735071	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53524.0	NM_001205243	14103.0	Mm.3355	NM_010177	ENSMUSG00000000817	Fasl	APT1LG1|CD178|CD95-L|CD95L|Fas-L|Faslg|Tnfsf6|Tnlg1a|gld	Fas ligand (TNF superfamily, member 6)	protein-coding	3.30716169442849	3.43665812031617	4.46490412163221	3.48651681023774	3.88502962230499	3.4622116404291	2.86666896827021	3.65345965626389	-0.355009154031339	0.525972342388601	0.948584451945851
Merged-chr14-63141150-2	chr14	63141050	63141250	+	971.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007798, intron 8 of 9)	ORR1C2|LTR|ERVL-MaLR	18688.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-38532446-5	chr6	38532271	38532471	+	852.216675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2490.0	NM_025363	66117.0	Mm.158971	NM_025363	ENSMUSG00000019689	Fmc1	1110001J03Rik	formation of mitochondrial complex V assembly factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-5226976-3	chr12	5226887	5227087	+	796.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164493, intron 2 of 13)	intron (NM_001164493, intron 2 of 13)	148695.0	NM_001164493	208439.0	Mm.388281	NM_001164493	ENSMUSG00000020627	Klhl29	A230106N14Rik|Gm68|Kbtbd9|mKIAA1921	kelch-like 29	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-56620983-3	chr18	56620881	56621081	+	717.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32633.0	NM_026099	67343.0	Mm.87057	NM_026099	ENSMUSG00000032900	Tex43	1700065I17Rik|Tseg7	testis expressed 43	protein-coding	-0.660405139923599	-0.64851693683249	0.143262521240699	-0.655406819666482	-0.372040201112039	-0.647642193262136	-0.65154502440906	-0.654881657246846	-1.75013547485745	0.540530547197658	1
Merged-chr2-91091919-3	chr2	91091842	91092042	+	778.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4736.0	NM_011355	20375.0	Mm.1302	NM_011355	ENSMUSG00000002111	Spi1	Dis-1|Dis1|PU.1|Sfpi-1|Sfpi1|Spi-1|Tcfpu1|Tfpu.1	spleen focus forming virus (SFFV) proviral integration oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-154603865-4	chr2	154603813	154604013	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021534)	promoter-TSS (NM_021534)	-240.0	NM_021534	59038.0	Mm.24673	NM_021534	ENSMUSG00000000876	Pxmp4	3010018P03Rik|Pmp24	peroxisomal membrane protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115068762-2	chr11	115068662	115068862	+	761.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-6723.0	NM_172050	217306.0	Mm.222667	NM_172050	ENSMUSG00000048498	Cd300e	BC034097|CLM2|Cd300le|TREM5	CD300E molecule	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97592052-3	chr11	97591960	97592160	+	985.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6451.0	NR_045496	69729.0	Mm.233452	NR_045496	ENSMUSG00000085860	2410003L11Rik	-	RIKEN cDNA 2410003L11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-41951287-4	chr18	41951182	41951382	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029942)	promoter-TSS (NM_029942)	-88.0	NM_029942	77619.0	Mm.30649	NM_029942	ENSMUSG00000056671	Prelid2	1700003A01Rik|C330008K14Rik	PRELI domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-66946118-3	chr6	66945989	66946189	+	723.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177560, intron 3 of 4)	intron (NM_001177560, intron 3 of 4)	49198.0	NM_001177558	14701.0	Mm.234342	NM_025278	ENSMUSG00000036402	Gng12	2010305F15Rik|AA536815|AI115529|AI314170|AI842738	guanine nucleotide binding protein (G protein), gamma 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-4095310-4	chr11	4095219	4095419	+	824.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_026443, exon 1 of 4)	5' UTR (NM_026443, exon 1 of 4)	112.0	NM_026443	67900.0	Mm.41719	NM_026443	ENSMUSG00000004748	Mtfp1	1700020C11Rik|2610507A21Rik|AV005788|Mtp18	mitochondrial fission process 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-52284785-3	chr10	52284693	52284893	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025705, intron 3 of 10)	intron (NM_025705, intron 3 of 10)	51174.0	NM_025705	66686.0	Mm.62982	NM_025705	ENSMUSG00000019891	Dcbld1	4631413K11Rik	discoidin, CUB and LCCL domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-185205244-4	chr1	185205144	185205344	+	928.787476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163754, intron 1 of 34)	intron (NM_001163754, intron 1 of 34)	1076.0	NM_001163754	98732.0	Mm.275841	NM_172649	ENSMUSG00000039318	Rab3gap2	1110059F07Rik|2010002H18Rik|5830469C09|AI851069|AW743433|RAB3-GAP150|mKIAA0839	RAB3 GTPase activating protein subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-9134283-2	chr13	9134183	9134383	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172585, intron 3 of 17)	intron (NM_172585, intron 3 of 17)	40402.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-8706601-2	chr19	8706501	8706701	+	594.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_008577)	TTS (NM_008577)	7296.0	NM_008577	17254.0	Mm.4114	NM_008577	ENSMUSG00000010095	Slc3a2	4F2|4F2HC|AI314110|Cd98|Ly-10|Ly-m10|Ly10|Mdu1|Mgp-2hc|NACAE	solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-72984373-1	chr4	72984273	72984473	+	581.0	f1_balb.idr	Intergenic	Lx9|LINE|L1	-131739.0	NM_001199270	353204.0	Mm.317892	NM_001199270	ENSMUSG00000059343	Aldoart1	4921524E03Rik|Aldo1-ps|Aldo1-ps2|Aldoa-ps2	aldolase 1 A, retrogene 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-117917946-2	chr4	117917846	117918046	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2947.0	NM_146152	230673.0	Mm.287810	NM_146152	ENSMUSG00000033365	Ipo13	Imp13|Kap13|Ranbp13	importin 13	protein-coding	0.274114643655007	0.40146151333961	-0.0722492131744854	-0.075780016197202	0.0573892643573475	0.410595358503723	-0.0712379038305313	-0.075163960484451	-0.431207338037515	0.843137433134871	1
Merged-chr15-98852201-2	chr15	98852101	98852301	+	794.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001033276, exon 32 of 55)	exon (NM_001033276, exon 32 of 55)	19004.0	NM_001033276	381022.0	Mm.264889	NM_001033276	ENSMUSG00000048154	Kmt2d	ALR|BC032281|BC058659|C430014K11Rik|KMT2B|Mll2|Mll4	lysine (K)-specific methyltransferase 2D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88951019-4	chr3	88950902	88951102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022994)	promoter-TSS (NM_022994)	-720.0	NM_001164533	65111.0	Mm.29028	NM_022994	ENSMUSG00000068921	Dap3	4921514D13Rik|DAP-3|MRP-S29|S29mt	death associated protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-4195209-2	chr5	4195109	4195309	+	686.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001042670, intron 1 of 1)	RMER10A|LTR|ERVL	2842.0	NM_001042670	208595.0	Mm.129815	NM_001042670	ENSMUSG00000053178	Mterf1b	Gm9897	mitochondrial transcription termination factor 1b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80878649-2	chr10	80878549	80878749	+	592.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1167.0	NM_001081688	432478.0	Mm.235302	NM_001081688	ENSMUSG00000059406	Tmprss9	Serase-1B	transmembrane protease, serine 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-113017607-4	chr12	113017503	113017703	+	949.508301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081170, intron 1 of 23)	intron (NM_001081170, intron 1 of 23)	3095.0	NM_001291444	217893.0	Mm.35754	NM_198165	ENSMUSG00000021143	Pacs2	6720425G15Rik|AW208651|AW489976|E230011J22|Pacs1l|mKIAA0602	phosphofurin acidic cluster sorting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-67754845-1	chr13	67754745	67754945	+	1000.0	f1_balb.idr	non-coding (NR_027969, exon 3 of 3)	non-coding (NR_027969, exon 3 of 3)	289.0	NM_001001130	22746.0	Mm.288396	NM_001001130	ENSMUSG00000058331	Zfp85	KRAB19|Rslcan2|Zfp71|Zfp85-rs1	zinc finger protein 85	protein-coding	2.53731412058027	4.56988466584991	1.53289085538513	3.04606980311014	3.45005172066175	3.86763301608899	1.85289185366534	3.74953827417936	0.0300500238931472	0.981398553017248	0.998431161219273
Merged-chr3-96579226-2	chr3	96579126	96579326	+	931.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027241, intron 7 of 7)	RSINE1|SINE|B4	-12425.0	NR_040409	100038464.0	Mm.475126	NR_040409	ENSMUSG00000074398	Gm15441	-	predicted gene 15441	ncRNA	-0.0733096884438659	-0.0602062846968462	0.236331938111156	0.324894911044683	-0.0724985381928454	-0.0592294125404371	0.243256992765764	0.330411208277409	0.0338460644461646	0.987652877965456	1
Merged-chr1-127278527-1	chr1	127278427	127278627	+	1000.0	f0_balb.idr	intron (NM_145128, intron 2 of 17)	intron (NM_145128, intron 2 of 17)	73541.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-83733563-1	chr8	83733463	83733663	+	607.0	f1_balb.idr	exon (NM_001163031, exon 4 of 18)	exon (NM_001163031, exon 4 of 18)	7748.0	NM_001163029	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	0.577990119761776	0.41737154756691	0.402129615353451	0.814113335550435	0.372390939736079	1.9533021970137	0.405532491348956	1.45751161809973	2.84840919451005	0.094544410496898	0.475682347138013
Merged-chr2-155050916-4	chr2	155050871	155051071	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_015770)	TTS (NM_015770)	23526.0	NM_016661	269378.0	Mm.330692	NM_016661	ENSMUSG00000027597	Ahcy	AA987153|AL024110|CuBP|SAHH	S-adenosylhomocysteine hydrolase	protein-coding	-1.05342916247491	-1.03302560393603	-0.466438893471238	-1.04989671582898	-1.0529039545329	-1.03047554388872	-0.861160561722806	-1.04952474823545	-1.77224865945682	0.576572258409177	1
Merged-chr6-48912363-2	chr6	48912263	48912463	+	949.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7377.0	NM_001161621	76507.0	Mm.213898	NM_029638	ENSMUSG00000029811	Aoc1	1600012D06Rik|Abp1|DAO	amine oxidase, copper-containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-108046313-2	chr3	108046213	108046413	+	651.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1454.0	NM_001160411	14865.0	Mm.31203	NM_026764	ENSMUSG00000027890	Gstm4	1110004G14Rik|GSTM7-7|Gstb-4|Gstb4	glutathione S-transferase, mu 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-62948772-4	chr10	62948670	62948870	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177372, intron 1 of 20)	intron (NM_177372, intron 1 of 20)	1741.0	NM_177372	327762.0	Mm.21492	NM_177372	ENSMUSG00000036875	Dna2	Dna2l|E130315B21Rik	DNA replication helicase/nuclease 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-113646024-2	chr6	113645924	113646124	+	758.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 1 of 11)	intron (NM_001113553, intron 1 of 11)	7557.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-90163387-2	chr16	90163287	90163487	+	645.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21150.0	NR_033476	100038709.0	Mm.484070	NR_033476		Gm10789	-	predicted gene 10789	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80756390-6	chr10	80756268	80756468	+	942.111084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199322, intron 1 of 27)	intron (NM_199322, intron 1 of 27)	1165.0	NM_199322	208266.0	Mm.152371	NM_199322	ENSMUSG00000061589	Dot1l	A630076O07|AW907654|Dot1|KMT4|mDot1	DOT1-like, histone H3 methyltransferase (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116628995-4	chr11	116628915	116629115	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1996.0	NM_172572	217344.0	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	3.05516303243927	3.13938354737969	2.81177427386326	3.55740732178774	3.62299243796655	3.0524067046746	2.55784022205367	2.7461112261202	-0.16686024384585	0.795525763090074	0.998431161219273
Merged-chr16-45733359-1	chr16	45733259	45733459	+	665.0	f0_balb.idr	intron (NR_073572, intron 3 of 4)	MTD|LTR|ERVL-MaLR	-8828.0	NM_019754	56370.0	Mm.24183	NM_019754	ENSMUSG00000022658	Tagln3	2700038H05Rik|2900005O10Rik|AI426007|Np25	transgelin 3	protein-coding	0.427036894204132	0.284911683863406	0.275508597903261	0.268161930916139	1.30879973042903	0.515978922884475	0.277593835666644	1.18849518559355	3.76810980152908	0.0446243548615566	1
Merged-chr14-67097764-2	chr14	67097641	67097841	+	678.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25270.0	NM_001205188	71978.0	Mm.273997	NM_028032	ENSMUSG00000022052	Ppp2r2a	2410004D02Rik|mKIAA1541	protein phosphatase 2, regulatory subunit B, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-84588690-2	chr18	84588590	84588790	+	643.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033341, intron 1 of 8)	intron (NM_001033341, intron 1 of 8)	814.0	NM_001033341	240476.0	Mm.329575	NM_001033341	ENSMUSG00000048410	Zfp407	6430585N13Rik|Gm333|Gm334|Gm948|ZNF407	zinc finger protein 407	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-49741694-3	chr7	49741614	49741814	+	789.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17392.0	NM_001146053	53415.0	Mm.20801	NM_016865	ENSMUSG00000039745	Htatip2	AW111545|Cc3|Tip30	HIV-1 Tat interactive protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-97111740-4	chr5	97111649	97111849	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198422)	promoter-TSS (NM_198422)	-153.0	NM_001359913	231474.0	Mm.332505	NM_198422	ENSMUSG00000055725	Paqr3	6330415A20Rik|AY424292|RKTG	progestin and adipoQ receptor family member III	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-34843995-2	chr4	34843895	34844095	+	540.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013889, intron 1 of 7)	intron (NM_013889, intron 1 of 7)	38953.0	NM_013889	30046.0	Mm.38193	NM_013889	ENSMUSG00000039967	Zfp292	5730450D02Rik|5830493J20Rik|9430062L07Rik|AI449016|Krox-10|Zfp-15|Zfp15|Zn-15|Zn-16|mKIAA0530	zinc finger protein 292	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-112614063-2	chr12	112613963	112614163	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198411, intron 22 of 22)	intron (NM_198411, intron 22 of 22)	-5984.0	NM_007421	11565.0	Mm.3440	NM_007421	ENSMUSG00000011148	Adssl1	AI528595|Adss|Adss1	adenylosuccinate synthetase like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-42580419-2	chr10	42580319	42580519	+	773.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_152229, intron 1 of 8)	intron (NM_152229, intron 1 of 8)	3169.0	NM_152229	21907.0	Mm.287100	NM_152229	ENSMUSG00000019803	Nr2e1	Mtl1|Mtll|TLL|Tlx|XTLL|fierce|frc|tailless	nuclear receptor subfamily 2, group E, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-89680396-2	chr6	89680296	89680496	+	803.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33807.0	NM_053228	113855.0	Mm.377152	NM_053228	ENSMUSG00000096051	Vmn1r40	V1rb7	vomeronasal 1 receptor 40	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115283314-2	chr11	115283168	115283368	+	573.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_178035)	TTS (NM_178035)	-6299.0	NM_007997	14149.0	Mm.4719	NM_007997	ENSMUSG00000018861	Fdxr	AR	ferredoxin reductase	protein-coding	-0.371874139817479	-0.907497544543158	-0.91575832747622	-0.917883676395731	-0.653929632727339	-0.904885094889076	-0.915149760356743	-0.917512775697636	-1.10787147514619	0.724568129051228	1
Merged-chr17-56290342-7	chr17	56290198	56290398	+	984.5238039999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025836, intron 1 of 7)	intron (NM_025836, intron 1 of 7)	213.0	NM_025836	66905.0	Mm.311696	NM_025836	ENSMUSG00000024197	Plin3	1300012C15Rik|M6prbp1|Tip47	perilipin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-84165601-2	chr3	84165501	84165701	+	814.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271728, intron 11 of 11)	MT2A|LTR|ERVL	-9037.0	NR_036654	624713.0	Mm.442604	NR_036654		Gm6525	EG624713	ribosomal protein L36a pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71725709-3	chr8	71725577	71725777	+	741.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028715)	promoter-TSS (NM_028715)	4.0	NR_131256	74015.0	Mm.22025	NM_028715	ENSMUSG00000070000	Fcho1	3322402E17Rik|N28152	FCH domain only 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117248653-3	chr8	117248597	117248797	+	775.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8322.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-146904608-4	chr5	146904510	146904710	+	781.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44047.0	NM_025652	66596.0	Mm.196528	NM_025652	ENSMUSG00000016503	Gtf3a	2010015D03Rik|2610111I01Rik|5330403M05Rik	general transcription factor III A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-75342166-3	chr13	75342058	75342258	+	648.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	252301.0	NM_013628	18548.0	Mm.1333	NM_013628	ENSMUSG00000021587	Pcsk1	Nec-1|Nec1|PC1|PC3|Phpp-1|SPC3	proprotein convertase subtilisin/kexin type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-61398022-3	chr18	61397992	61398192	+	805.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029879)	promoter-TSS (NR_029879)	-192.0	NR_029879	723889.0		NR_029879	ENSMUSG00000105200	Mir378a	Mir378|Mirn378|mmu-mir-378|mmu-mir-378a	microRNA 378a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-79141046-2	chr8	79140946	79141146	+	594.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001294279, intron 8 of 14)	intron (NM_001294279, intron 8 of 14)	107537.0	NM_026315	67687.0	Mm.178707	NM_026315	ENSMUSG00000031682	1700011L22Rik	-	RIKEN cDNA 1700011L22 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118632560-4	chr9	118632456	118632656	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 3 of 27)	intron (NM_133721, intron 3 of 27)	25847.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69197380-3	chr11	69197248	69197448	+	570.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009661, intron 2 of 13)	intron (NM_009661, intron 2 of 13)	495.0	NM_009661	11688.0	Mm.289672	NM_009661	ENSMUSG00000020891	Alox8	15-LOX-2|15-LOX-B|8-LOX|8S-LOX|Alox15b	arachidonate 8-lipoxygenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-61448475-4	chr18	61448401	61448601	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36106.0	NR_045419	442846.0	Mm.417648	NR_045419		A530050N04Rik	-	RIKEN cDNA A530050N04 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-86749533-1	chr4	86749433	86749633	+	652.0	f1_c57bl6.idr	intron (NM_184088, intron 1 of 31)	intron (NM_184088, intron 1 of 31)	978.0	NM_184088	329877.0	Mm.273718	NM_184088	ENSMUSG00000038024	Dennd4c	1700065A05Rik|AA420392	DENN/MADD domain containing 4C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-110591678-4	chr12	110591466	110591666	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033340, exon 1 of 1)	non-coding (NR_033340, exon 1 of 1)	192.0	NR_033340	319786.0	Mm.129691	NR_033340		B930059L03Rik	-	RIKEN cDNA B930059L03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-31125654-4	chr6	31125580	31125780	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110471, intron 3 of 3)	intron (NR_110471, intron 3 of 3)	-62587.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-47795569-3	chr19	47795450	47795650	+	901.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027559, intron 11 of 37)	intron (NM_027559, intron 11 of 37)	-40393.0	NR_106165	102465883.0		NR_106165	ENSMUSG00000099069	Mir8090	Gm27862|mmu-mir-8090	microRNA 8090	ncRNA	-1.50783465358962	-1.47459164319524	-1.48464460392401	-1.49290240518506	-1.50550105572628	-1.15605519142466	-1.32418986734777	-1.49142426270749	2.26479952224937	0.504021814874163	1
Merged-chr7-43562893-4	chr7	43562794	43562994	+	943.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001008549, intron 1 of 4)	intron (NM_001008549, intron 1 of 4)	524.0	NM_001008549	210104.0	Mm.333821	NM_001008549	ENSMUSG00000056592	Zfp658	-	zinc finger protein 658	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-97963373-2	chr16	97963273	97963473	+	705.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081684)	promoter-TSS (NM_001081684)	-751.0	NM_001320385	114565.0	Mm.474489	NM_175428	ENSMUSG00000046962	Zbtb21	5430437K12Rik|B430213I24Rik|Zfp295|Znf295|mKIAA1227	zinc finger and BTB domain containing 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80622491-4	chr10	80622367	80622567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134002)	promoter-TSS (NM_134002)	-313.0	NM_134002	103236.0	Mm.29873	NM_134002	ENSMUSG00000003345	Csnk1g2	2810429I12Rik|AI463719	casein kinase 1, gamma 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132732545-4	chr4	132732444	132732644	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_201368)	promoter-TSS (NM_201368)	2.0	NM_201368	381560.0	Mm.44558	NM_201368	ENSMUSG00000037752	Xkr8	4931440N07Rik|AI597014|Gm1031|XRG8|mXkr8	X-linked Kx blood group related 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-128799658-4	chr6	128799550	128799750	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-11009.0	NM_008527	17059.0	Mm.480764	NM_008527	ENSMUSG00000030325	Klrb1c	AI462337|CD161|Klrb1b|Ly-59|Ly55c|Ly59|NK-RP1|NK1.1|NKR-P1.9|NKRP1|NKRP140|Nk-1|Nk-1.2|Nk1|Nk1.2|Nkrp1b|Nkrp1c|ly-55c	killer cell lectin-like receptor subfamily B member 1C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-57574716-1	chr1	57574616	57574816	+	552.0	f0_balb.idr	Intergenic	Intergenic	-168042.0	NM_001302963	68736.0	Mm.288490	NM_001037742	ENSMUSG00000048495	Tyw5	1110034B05Rik	tRNA-yW synthesizing protein 5	protein-coding	0.0572739989828873	0.467142499231394	0.0720807014214002	0.0665447138741064	0.0586596592719187	0.0808028224408963	1.00247253401419	0.657122647951448	2.44682574042373	0.261191901590659	1
Merged-chr19-41405996-2	chr19	41405896	41406096	+	686.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus1|LINE|L1	-20926.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-10196041-2	chr17	10195941	10196141	+	706.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	123320.0	NM_021881	19317.0	Mm.130694	NM_021881	ENSMUSG00000062078	Qk	1110003F05Rik|1500005P18|QkI|l(17)-1Wis|l17Wis1	quaking	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-7850201-2	chr10	7850127	7850327	+	847.5	f0_balb.idr|f1_c57bl6.idr	intron (NM_172785, intron 2 of 5)	intron (NM_172785, intron 2 of 5)	13846.0	NR_039563	100628581.0		NR_039563	ENSMUSG00000093060	Mir5104	mir-5104|mmu-mir-5104|mu-mir-5104	microRNA 5104	ncRNA	0.884325271863143	0.407726909829218	1.10390274524272	0.393104091299061	1.15212427141703	0.409575588148786	0.401314183473698	0.720912010995143	-0.11578929917758	0.949289429827683	1
Merged-chr6-108446810-2	chr6	108446710	108446910	+	904.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 44 of 61)	intron (NM_010585, intron 44 of 61)	-42933.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-143024513-4	chr7	143024379	143024579	+	703.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110354, intron 4 of 4)	Lx7|LINE|L1	18820.0	NM_001128081	27027.0	Mm.28172	NM_020286	ENSMUSG00000000244	Tspan32	AW208513|Art-1|BB235973|D7Wsu37e|Phemx|Tssc6	tetraspanin 32	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-83066476-4	chr13	83066345	83066545	+	992.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-368112.0	NR_039537	100628621.0		NR_039537	ENSMUSG00000106655	Mir3961	mmu-mir-3961	microRNA 3961	ncRNA	2.28982289300215	2.26181449333799	3.10362917322005	2.75612150819381	3.2671097564786	2.85024744907489	3.12765923701551	1.46925290939435	0.367800844118678	0.652658747231761	0.986434615290108
Merged-chr5-43887515-3	chr5	43887390	43887590	+	820.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007646, intron 1 of 7)	intron (NM_007646, intron 1 of 7)	18681.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70543806-2	chr8	70543706	70543906	+	838.5	f0_balb.idr|f1_balb.idr	intron (NM_007924, intron 1 of 11)	intron (NM_007924, intron 1 of 11)	4131.0	NM_007924	13716.0	Mm.271973	NM_007924	ENSMUSG00000070002	Ell	Ell1|Men	elongation factor RNA polymerase II	protein-coding	-0.263104048418242	-0.509116084950894	-0.512635359094974	-0.51534208277247	0.111578800940105	-0.317315812560509	-0.511860222336185	-0.514869761161652	1.7590246987027	0.50681421659804	1
Merged-chr3-89226339-2	chr3	89226239	89226439	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_030579)	TTS (NR_030579)	859.0	NR_030579	100124470.0		NR_030579	ENSMUSG00000076255	Mir92b	Mirn92b|mir-92b|mmu-mir-92b	microRNA 92b	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180761857-2	chr1	180761757	180761957	+	791.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35814.0	NM_133225	170760.0	Mm.272981	NM_133225	ENSMUSG00000026499	Acbd3	60kDa|8430407O11Rik|D1Ertd10e|GCP60|GOLPH1|Gocap1|Pap7	acyl-Coenzyme A binding domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-80214248-2	chr12	80214148	80214348	+	917.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134156, intron 1 of 20)	intron (NM_134156, intron 1 of 20)	46123.0	NM_134156	109711.0	Mm.253564	NM_134156	ENSMUSG00000015143	Actn1	3110023F10Rik|Actn1a	actinin, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65001635-3	chr9	65001534	65001734	+	812.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021345, intron 5 of 10)	intron (NM_021345, intron 5 of 10)	20083.0	NM_021345	57874.0	Mm.308180	NM_021345	ENSMUSG00000033629	Hacd3	4930523M17Rik|AW742319|B-ind1|Hcad3|Hspc121|Ptplad1	3-hydroxyacyl-CoA dehydratase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-68884472-1	chr8	68884372	68884572	+	771.0	f0_c57.idr	intron (NM_008509, intron 1 of 9)	intron (NM_008509, intron 1 of 9)	3917.0	NM_008509	16956.0	Mm.1514	NM_008509	ENSMUSG00000015568	Lpl	-	lipoprotein lipase	protein-coding	-0.514277026420303	-0.778207403506971	-0.0956792790509572	-0.784154387422975	-0.787814877354107	-0.7769395679013	-0.780823814601969	-0.783701879257098	-3.20153101767105	0.268781693623117	1
Merged-chr14-48133249-1	chr14	48133149	48133349	+	638.0	f1_c57bl6.idr	intron (NM_033602, intron 1 of 5)	intron (NM_033602, intron 1 of 5)	12380.0	NM_033602	93834.0	Mm.296457	NM_033602	ENSMUSG00000021846	Peli2	AW047589|BB129927	pellino 2	protein-coding	1.2174747797726	2.30306075180746	1.29980968521017	2.06336382262656	1.96788027613166	1.72425173328547	1.80765491273235	1.05300651268527	-0.371977765943701	0.74456941530663	0.998431161219273
Merged-chr17-56339035-2	chr17	56338935	56339135	+	950.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_172132, intron 1 of 22)	intron (NM_172132, intron 1 of 22)	12985.0	NM_001357909	193796.0	Mm.45047	NM_172132	ENSMUSG00000024201	Kdm4b	4732474L06Rik|Jmjd2b	lysine (K)-specific demethylase 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-4325187-4	chr8	4325099	4325299	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010485)	promoter-TSS (NM_010485)	-11.0	NR_033527	20300.0	Mm.7275	NM_009138	ENSMUSG00000023235	Ccl25	A130072A22Rik|AI852536|CKb15|Scya25|TECK	chemokine (C-C motif) ligand 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-10041069-4	chr17	10040960	10041160	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-265194.0	NR_045433	71092.0	Mm.243827	NR_045433		4930452A19Rik	4933424P20Rik	RIKEN cDNA 4930452A19 gene	ncRNA	5.584229581777	5.24066035140078	4.9266559508701	5.2818038690922	5.34434594730288	5.02926226656461	5.80409132234832	4.86269868920075	0.0295001581194451	0.925950520061612	0.998431161219273
Merged-chr6-34944659-4	chr6	34944552	34944752	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001025573)	TTS (NM_001025573)	23704.0	NM_009292	20899.0	Mm.5171	NM_009292	ENSMUSG00000029848	Stra8	-	stimulated by retinoic acid gene 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-25212746-2	chr12	25212646	25212846	+	786.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	83572.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-120434359-1	chr14	120434259	120434459	+	629.0	f0_balb.idr	Intergenic	Intergenic	-44102.0	NM_029519	76108.0	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-29712281-2	chr6	29712181	29712381	+	794.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301407, intron 4 of 7)	intron (NM_001301407, intron 4 of 7)	18067.0	NM_146173	232670.0	Mm.225289	NM_146173	ENSMUSG00000001763	Tspan33	1300010A20Rik|Pen	tetraspanin 33	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-9403019-4	chr3	9402928	9403128	+	889.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015499)	promoter-TSS (NR_015499)	-50.0	NR_015499	320088.0	Mm.212908	NR_015499	ENSMUSG00000097365	C030034L19Rik	A130044O20Rik	RIKEN cDNA C030034L19 gene	ncRNA	1.25932754057892	0.954536178814541	0.933689000338944	1.3274836963045	1.65766321481375	1.60278358436204	1.81542740842393	2.47173922998682	2.85363712323129	0.021158603743356	0.186168708476065
Merged-chr11-76581429-4	chr11	76581381	76581581	+	953.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-3742.0	NM_198894	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-39652441-2	chr8	39652341	39652541	+	613.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9763.0	NM_001113326	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	-0.608730598306612	-0.84660011358263	-0.851242018251956	-0.853225634987933	-0.602795768699061	-0.844034998216862	-0.538818657953894	-0.852879804709053	1.06890794781017	0.712452081355469	1
Merged-chr12-20227289-2	chr12	20227189	20227389	+	701.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MMERGLN-int|LTR|ERV1	588490.0	NR_015521	69513.0	Mm.273972	NR_015521	ENSMUSG00000099759	1700030C10Rik	-	RIKEN cDNA 1700030C10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-102577958-2	chr11	102577858	102578058	+	688.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_040286, intron 2 of 2)	intron (NR_040286, intron 2 of 2)	1161.0	NR_040286	100040792.0	Mm.277966	NR_040286	ENSMUSG00000078640	Gm11627	-	predicted gene 11627	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-96740657-1	chr2	96740557	96740757	+	560.0	f1_c57bl6.idr	intron (NM_001289742, intron 2 of 7)	RMER16_Mm|LTR|ERVK	422488.0	NM_001289743	241568.0	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	2.15673432858406	2.35499365695756	2.17368570413162	2.00623623304024	1.01435291428664	1.09356360089666	1.06883937061153	1.90558708983773	-2.58496277073518	0.0293522402395295	0.233692062804062
Merged-chr8-18924633-2	chr8	18924549	18924749	+	759.333313	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	26222.0	NM_001286469	319581.0	Mm.111354	NM_176951	ENSMUSG00000039814	Xkr5	5430438H03Rik|XRG5	X-linked Kx blood group related 5	protein-coding	4.49213070982324	4.89754234294081	4.38778986098417	3.95596378800218	2.99306431503299	3.39900419561283	1.78877936658164	4.09087823373948	-1.60716246808016	0.00499017476971382	0.0668713144680116
Merged-chr4-123921949-6	chr4	123921896	123922096	+	956.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017475, intron 3 of 6)	intron (NM_017475, intron 3 of 6)	4563.0	NM_017475	54170.0	Mm.220922	NM_017475	ENSMUSG00000028646	Rragc	AU041672|Gtr2|RAGC|TIB929|YGR163W	Ras-related GTP binding C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-48827565-3	chr2	48827463	48827663	+	714.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007396, intron 1 of 10)	intron (NM_007396, intron 1 of 10)	13454.0	NM_007396	11480.0	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-30821342-2	chr16	30821242	30821442	+	929.6666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	221619.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44140637-1	chr7	44140537	44140737	+	552.0	f0_balb.idr	exon (NM_008454, exon 3 of 5)	exon (NM_008454, exon 3 of 5)	3347.0	NM_008454	16615.0	Mm.440887	NM_008454	ENSMUSG00000038968	Klk1b16	Klk16|mGk-16	kallikrein 1-related peptidase b16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78772592-4	chr15	78772481	78772681	+	711.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008595, intron 1 of 7)	intron (NM_008595, intron 1 of 7)	864.0	NM_008595	17305.0	Mm.149235	NM_008595	ENSMUSG00000018169	Mfng	AW546563	MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35194445-3	chr17	35194356	35194556	+	778.1904910000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_105939)	promoter-TSS (NR_105939)	-51.0	NM_008518	16994.0	Mm.1715	NM_008518	ENSMUSG00000024399	Ltb	AI662801|LTbeta|Tnfc|Tnfsf3|Tnlg1c|p33	lymphotoxin B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-80935352-1	chr13	80935252	80935452	+	868.0	f0_balb.idr	Intergenic	Intergenic	-5051.0	NR_103550	71416.0	Mm.415500	NR_103550		5430425K12Rik	-	RIKEN cDNA 5430425K12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-145951624-1	chr3	145951524	145951724	+	740.0	f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	13610.0	NR_151446	66421.0	Mm.25137	NM_025555	ENSMUSG00000036873	2410004B18Rik	4930572C24Rik	RIKEN cDNA 2410004B18 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-76583673-2	chr11	76583518	76583718	+	594.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5879.0	NM_198894	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	0.0120305217199503	0.0298411600063277	0.706128860616901	0.0195191540108374	0.505213469981008	0.541399901674457	0.0253044572642039	0.0203058935643693	0.407349962859615	0.854748473507944	1
Merged-chr11-70907035-2	chr11	70906935	70907135	+	728.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019400, intron 7 of 17)	intron (NM_019400, intron 7 of 17)	62274.0	NM_001291142	54189.0	Mm.7087	NM_019400	ENSMUSG00000020817	Rabep1	Rab5ep|rabaptin-5|rabaptin-5alpha	rabaptin, RAB GTPase binding effector protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-51337807-4	chr3	51337684	51337884	+	800.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023502, intron 1 of 9)	intron (NM_023502, intron 1 of 9)	2860.0	NM_001356358	69257.0	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83455496-4	chr6	83455389	83455589	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347313, intron 1 of 11)	intron (NM_001347313, intron 1 of 11)	903.0	NM_001347313	194388.0	Mm.211030	NM_183138	ENSMUSG00000034832	Tet3	B430006D22Rik|BC037432|D230004J03Rik	tet methylcytosine dioxygenase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33756631-4	chr16	33756483	33756683	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175256, intron 12 of 14)	intron (NM_175256, intron 12 of 14)	-37454.0	NM_010739	17063.0	Mm.3177	NM_010739	ENSMUSG00000022824	Muc13	114/A10|14/A10|AI159736|Lrrp|Ly64|NJ-1	mucin 13, epithelial transmembrane	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75764723-2	chr11	75764605	75764805	+	895.25	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009536, exon 6 of 6)	3' UTR (NM_009536, exon 6 of 6)	-31104.0	NR_136933	102641247.0	Mm.411386	NR_136932		Gm12339	-	predicted gene 12339	ncRNA	-0.596726398259546	-0.829953574188825	-0.833414822235671	-0.685767339751614	-0.590911262578043	-0.827421979488929	-0.667719829873343	-0.834988367190135	0.0849497718182371	0.974917823097774	1
Merged-chr1-191724851-4	chr1	191724729	191724929	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001134829, intron 2 of 7)	intron (NM_001134829, intron 2 of 7)	6434.0	NM_001134829	226856.0	Mm.277958	NM_172266	ENSMUSG00000026623	Lpgat1	AI649174|AW112037|BC013667	lysophosphatidylglycerol acyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-52190590-4	chr5	52190488	52190688	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007839)	promoter-TSS (NM_007839)	-42.0	NM_001042620	13204.0	Mm.993	NM_007839	ENSMUSG00000029169	Dhx15	DBP1|DEAH9|Ddx15|HRH2|mDEAH9	DEAH (Asp-Glu-Ala-His) box polypeptide 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96767251-4	chr3	96767143	96767343	+	947.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026406, intron 3 of 8)	ORR1D1-int|LTR|ERVL-MaLR	39632.0	NM_026406	67845.0	Mm.386792	NM_026406	ENSMUSG00000028098	Rnf115	2610028E05Rik|AU042696|Zfp364	ring finger protein 115	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88296979-4	chr3	88296862	88297062	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009836)	promoter-TSS (NM_009836)	37.0	NM_001357024	76927.0	Mm.273330	NM_029801	ENSMUSG00000010538	Tsacc	1700021C14Rik|SIP	TSSK6 activating co-chaperone	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59680842-5	chr15	59680840	59681040	+	992.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32286.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-27185467-2	chr14	27185367	27185567	+	594.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289686, intron 2 of 12)	MTE2a|LTR|ERVL-MaLR	41474.0	NM_001289686	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-84947219-2	chr15	84947119	84947319	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001033273, exon 10 of 10)	3' UTR (NM_001033273, exon 10 of 10)	4404.0	NR_037206	100526461.0		NR_037206	ENSMUSG00000080441	Mir1249	mir-1249|mmu-mir-1249	microRNA 1249	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-38352254-4	chr18	38352153	38352353	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER4B|LTR|ERVK	-13260.0	NM_011937	26384.0	Mm.22374	NM_011937	ENSMUSG00000052102	Gnpda1	GNPDA|Gnp1|Gnpi|oscillin	glucosamine-6-phosphate deaminase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-164442572-2	chr2	164442447	164442647	+	793.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_011521, intron 1 of 4)	intron (NM_011521, intron 1 of 4)	641.0	NM_011521	20971.0	Mm.3815	NM_011521	ENSMUSG00000017009	Sdc4	AA959608|AW108331|S4|Synd4|ryudocan|syndecan-4	syndecan 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-97962295-4	chr16	97962174	97962374	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175428, intron 1 of 2)	CpG	348.0	NM_001081685	114565.0	Mm.474489	NM_175428	ENSMUSG00000046962	Zbtb21	5430437K12Rik|B430213I24Rik|Zfp295|Znf295|mKIAA1227	zinc finger and BTB domain containing 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-50023080-2	chr11	50022980	50023180	+	574.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2251.0	NM_021540	59044.0	Mm.359004	NM_021540	ENSMUSG00000020376	Rnf130	2510042A13Rik|G1RZFP|G1rp|GOLIATH|GP	ring finger protein 130	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-123328536-2	chr7	123328436	123328636	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001316713, intron 2 of 19)	intron (NM_001316713, intron 2 of 19)	41379.0	NM_001122643	70497.0	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-29485671-2	chr17	29485571	29485771	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-5374.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-5861860-4	chr2	5861750	5861950	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_152181)	TTS (NR_152181)	1084.0	NR_152181	791411.0	Mm.442531	NR_152181		Gm13199	-	predicted gene 13199	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-103872139-4	chr2	103872031	103872231	+	872.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28820.0	NR_131913	100996933.0	Mm.394449	NR_131913		Lincred1	-	long intergenic non-protein coding RNA of erythroid differentiation 1	ncRNA	2.52984366812164	2.83520801354993	1.8136886331543	2.66483358433915	3.09129249164498	3.05760616854095	2.86449527873671	2.44850886069151	0.739316904518676	0.317661129961075	0.820928684076605
Merged-chr14-20702000-3	chr14	20701883	20702083	+	813.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_029446)	TTS (NR_029446)	-1044.0	NM_025366	66121.0	Mm.246996	NM_025366	ENSMUSG00000063787	Chchd1	1110001O19Rik|2400010G13Rik|MRP-S37	coiled-coil-helix-coiled-coil-helix domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-6571081-4	chr15	6570962	6571162	+	975.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8785.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-45264447-3	chr9	45264301	45264501	+	852.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008348, exon 5 of 7)	exon (NM_008348, exon 5 of 7)	2306.0	NR_106054	102466803.0		NR_106054	ENSMUSG00000098361	Mir7086	Gm27643|mmu-mir-7086	microRNA 7086	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-52273202-4	chr10	52273088	52273288	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025705, intron 2 of 10)	intron (NM_025705, intron 2 of 10)	39569.0	NM_025705	66686.0	Mm.62982	NM_025705	ENSMUSG00000019891	Dcbld1	4631413K11Rik	discoidin, CUB and LCCL domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-24637338-2	chr10	24637238	24637438	+	657.25	f1_balb.idr|f1_c57bl6.idr	TTS (NM_008813)	TTS (NM_008813)	41896.0	NM_010217	14219.0	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81191534-4	chr10	81191438	81191638	+	926.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001190473, intron 6 of 8)	MTC|LTR|ERVL-MaLR	-3153.0	NR_015477	69678.0	Mm.81562	NR_015477		Atcayos	2310050B05Rik	ataxia, cerebellar, Cayman type, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-90111622-2	chr9	90111522	90111722	+	749.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039147, intron 1 of 12)	B1_Mur2|SINE|Alu	3198.0	NM_001039147	21761.0	Mm.426209	NM_024431	ENSMUSG00000062270	Morf4l1	MORFRG15|MRG15|TEG-189|Tex189|mKIAA4002	mortality factor 4 like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-75906118-2	chr18	75906001	75906201	+	677.5	f0_c57.idr|f1_c57bl6.idr	intron (NM_145356, intron 2 of 4)	intron (NM_145356, intron 2 of 4)	85923.0	NM_145356	207259.0	Mm.159332	NM_145356	ENSMUSG00000044646	Zbtb7c	B230208J24Rik|Kr-pok|Zbtb36	zinc finger and BTB domain containing 7C	protein-coding	2.11656274632211	1.16379174929001	2.55080149535352	2.40119634056471	0.796527461472684	1.17327752947368	0.855430629562711	0.831936511933477	-4.80517142796127	0.000615923857594957	0.0132593082118857
Merged-chr3-135683588-3	chr3	135683511	135683711	+	775.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008689, intron 1 of 24)	intron (NM_008689, intron 1 of 24)	7936.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-116255509-3	chr3	116255405	116255605	+	782.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2021.0	NM_022427	64378.0	Mm.40025	NM_022427	ENSMUSG00000068696	Gpr88	AW061286|Strg	G-protein coupled receptor 88	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-73306472-2	chr13	73306372	73306572	+	901.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22010.0	NR_033306	407785.0	Mm.29897	NM_010888	ENSMUSG00000021606	Ndufs6	BC059730|IP13	NADH dehydrogenase (ubiquinone) Fe-S protein 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-121837790-4	chr5	121837708	121837908	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008507)	promoter-TSS (NM_008507)	-949.0	NM_008507	16923.0	Mm.65493	NM_008507	ENSMUSG00000042594	Sh2b3	AI429800|Lnk	SH2B adaptor protein 3	protein-coding	-1.17367364971587	-1.14665061133654	-1.15856004380685	-1.16834280623128	-1.17310571790619	-1.14406978763884	-0.42938571406771	-1.16659169643457	2.89727187181404	0.396361616615464	1
Merged-chr7-27493249-4	chr7	27493164	27493364	+	824.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6060.0	NM_198048	19153.0	Mm.10119	NM_019412	ENSMUSG00000053198	Prx	L-Periaxin	periaxin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-117289344-7	chr4	117289250	117289450	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001310731, exon 1 of 11)	5' UTR (NM_001310731, exon 1 of 11)	105.0	NM_001310730	66743.0	Mm.318331	NM_025739	ENSMUSG00000028677	Rnf220	4732477A13|4931406I20Rik|5730503K05Rik|AV302541	ring finger protein 220	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-74371899-3	chr11	74371806	74372006	+	948.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7235.0	NM_001011851	258153.0	Mm.376124	NM_001011851	ENSMUSG00000058275	Olfr412	MOR127-5P	olfactory receptor 412	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-46894616-4	chr1	46894506	46894706	+	996.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356417, intron 1 of 10)	ORR1D2|LTR|ERVL-MaLR	31170.0	NM_001356417	227059.0	Mm.233889	NM_172653	ENSMUSG00000025986	Slc39a10	2900042E17Rik|5430433I10|Zip10|mKIAA1265	solute carrier family 39 (zinc transporter), member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4164726-4	chr19	4164627	4164827	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_134148, exon 10 of 10)	3' UTR (NM_134148, exon 10 of 10)	-1344.0	NR_153659	58988.0	Mm.271937	NM_021485	ENSMUSG00000024830	Rps6kb2	S6K-beta-2|S6K2	ribosomal protein S6 kinase, polypeptide 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-27198438-2	chr3	27198338	27198538	+	563.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 1 of 4)	B3|SINE|B2	15434.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-75035454-2	chr8	75035354	75035554	+	706.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001136259, intron 1 of 15)	intron (NM_001136259, intron 1 of 15)	1768.0	NM_011622	21968.0	Mm.1967	NM_011622	ENSMUSG00000042870	Tom1	-	target of myb1 trafficking protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59413397-4	chr15	59413310	59413510	+	972.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164604, intron 2 of 4)	intron (NM_001164604, intron 2 of 4)	39212.0	NM_001164604	68501.0	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-44264385-4	chr19	44264277	44264477	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-29299.0	NM_009128	20250.0	Mm.487021	NM_009128	ENSMUSG00000025203	Scd2	Mir5114|Scd-2|mir-5114|swty	stearoyl-Coenzyme A desaturase 2	protein-coding	0.62645786803648	0.47279305936773	0.458382028807741	0.44698468511564	1.37424432688621	0.475988280202777	1.94126222424277	1.01622101066614	4.17880267105787	0.013425022463792	0.134377157553317
Merged-chr19-16348239-2	chr19	16348139	16348339	+	755.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008139, intron 5 of 6)	ORR1A2|LTR|ERVL-MaLR	-33235.0	NR_105832	102465218.0		NR_105832	ENSMUSG00000098718	Mir496b	Gm28028|mmu-mir-496b	microRNA 496b	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-55016600-3	chr12	55016494	55016694	+	874.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30258.0	NM_013815	217578.0	Mm.479583	NM_013815	ENSMUSG00000035021	Baz1a	Acf1|B930060C03|BC065123|Gtl5|Wcrf180|cbp146	bromodomain adjacent to zinc finger domain 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-52503824-4	chr12	52503757	52503957	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-12220.0	NM_009706	11855.0	Mm.35059	NM_009706	ENSMUSG00000035133	Arhgap5	p190-B|p190B	Rho GTPase activating protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128321724-1	chr2	128321624	128321824	+	878.0	f1_c57bl6.idr	intron (NR_028590, intron 2 of 2)	intron (NR_028590, intron 2 of 2)	107627.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-88044512-1	chr6	88044412	88044612	+	687.200012	f0_balb.idr	intron (NM_001293652, intron 1 of 7)	MIR|SINE|MIR	505.0	NM_001293653	19349.0	Mm.333233	NM_009005	ENSMUSG00000079477	Rab7	Rab7a	RAB7, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-10682955-4	chr5	10682874	10683074	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MYSERV16_I-int|LTR|ERVK	-182055.0	NR_003596	623849.0	Mm.335888	NR_003596	ENSMUSG00000091422	Gm6455	EG623849	predicted gene 6455	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-13647840-4	chr8	13647765	13647965	+	990.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 1 of 23)	intron (NM_009025, intron 1 of 23)	29722.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	-0.192327152024675	-0.536741284782148	-0.37224019564403	-0.542590716332221	-0.546165717894291	-0.535993416206159	-0.539321089299533	-0.0301188826611306	0.161950663901142	0.951491342786078	1
Merged-chr8-79159578-4	chr8	79159459	79159659	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001294279, intron 8 of 14)	MLT1J|LTR|ERVL-MaLR	89024.0	NM_026315	67687.0	Mm.178707	NM_026315	ENSMUSG00000031682	1700011L22Rik	-	RIKEN cDNA 1700011L22 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-103281924-4	chr11	103281834	103282034	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14533.0	NM_016896	53859.0	Mm.158981	NM_016896	ENSMUSG00000020941	Map3k14	Nik|aly	mitogen-activated protein kinase kinase kinase 14	protein-coding	4.28161049954391	4.21028504847733	3.57354803661837	3.63319598368621	4.45757981963069	2.4772950632292	4.32454876759188	3.48873855122813	-0.0824932211108392	0.882050860670379	0.998431161219273
Merged-chr4-132077148-2	chr4	132077048	132077248	+	774.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1835.0	NM_001128607	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-135439665-2	chr2	135439565	135439765	+	901.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_019677, intron 32 of 32)	intron (NM_019677, intron 32 of 32)	143555.0	NR_015544	320684.0	Mm.421433	NR_015544	ENSMUSG00000085631	9630028H03Rik	-	RIKEN cDNA 9630028H03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-22398237-3	chr6	22398146	22398346	+	857.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42165.0	NM_138587	27999.0	Mm.490307	NM_138587	ENSMUSG00000029672	Fam3c	D6Wsu176e|Ilei	family with sequence similarity 3, member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78597973-4	chr15	78597870	78598070	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028195, intron 1 of 12)	intron (NM_028195, intron 1 of 12)	923.0	NM_028195	72318.0	Mm.32911	NM_028195	ENSMUSG00000018008	Cyth4	2510004M07Rik|5830469K17Rik|AI467541|Pscd4|mFLJ00017	cytohesin 4	protein-coding	6.05891432398753	6.11958701328028	5.67543157372916	6.15146882753536	5.8411837494956	5.55657126931269	6.05328350297211	5.45793194785945	-0.294840116514497	0.237444359607967	0.733870588171069
Merged-chr13-67728789-4	chr13	67728668	67728868	+	957.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027969)	promoter-TSS (NR_027969)	405.0	NM_145622	235907.0	Mm.440123	NM_145622	ENSMUSG00000071281	Zfp65	KRAB5|Zfp71-rs1|pz114	zinc finger protein 65	protein-coding	0.30922926127558	0.358593996858207	0.977233952686135	0.330605672802485	0.531877851171704	0.36203689984728	2.09373309299285	0.94009128710791	2.69222732051468	0.113368491117441	0.527207424971727
Merged-chr12-112619235-4	chr12	112619154	112619354	+	995.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007421)	promoter-TSS (NM_007421)	-793.0	NM_007421	11565.0	Mm.3440	NM_007421	ENSMUSG00000011148	Adssl1	AI528595|Adss|Adss1	adenylosuccinate synthetase like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-138943914-4	chr4	138943826	138944026	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-23186.0	NM_025786	66825.0	Mm.252312	NM_025786	ENSMUSG00000070661	Rnf186	9130020G10Rik	ring finger protein 186	protein-coding	6.69436667195104	6.93284645305937	5.84855772464466	6.51791045038038	6.52424375804615	6.31566346229155	6.87272729076237	6.50248644785991	0.019006335903737	0.935539496397621	0.998431161219273
Merged-chr7-66226072-4	chr7	66225969	66226169	+	997.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	116554.0	NM_001081163	269941.0	Mm.333916	NM_001081163	ENSMUSG00000032640	Chsy1	mKIAA0990	chondroitin sulfate synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135312503-2	chr4	135312403	135312603	+	930.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39743.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-157717668-3	chr3	157717566	157717766	+	646.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	150774.0	NM_011196	19218.0	Mm.30424	NM_011196	ENSMUSG00000040016	Ptger3	EP3|Pgerep3|Ptgerep3	prostaglandin E receptor 3 (subtype EP3)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-124778071-2	chr2	124777971	124778171	+	906.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	124490.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-51204672-2	chr17	51204572	51204772	+	656.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25320.0	NM_001285991	72238.0	Mm.120650	NM_028162	ENSMUSG00000023923	Tbc1d5	1600014N05Rik	TBC1 domain family, member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-45194862-2	chr2	45194762	45194962	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-77420.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10605455-4	chr19	10605349	10605549	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015735)	promoter-TSS (NM_015735)	-176.0	NM_015735	13194.0	Mm.289915	NM_015735	ENSMUSG00000024740	Ddb1	127kDa|AA408517|p127-Ddb1	damage specific DNA binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-101766795-4	chr2	101766708	101766908	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355625, intron 3 of 8)	intron (NM_001355625, intron 3 of 8)	30899.0	NM_175181	72446.0	Mm.24138	NM_175181	ENSMUSG00000032841	Prr5l	2600010E01Rik|4833411O04Rik|Protor-2|Protor2	proline rich 5 like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24698399-1	chr17	24698299	24698499	+	676.0	f1_c57bl6.idr	exon (NM_001357836, exon 2 of 9)	exon (NM_001357836, exon 2 of 9)	2165.0	NM_001357836	71893.0	Mm.390971	NM_027988	ENSMUSG00000019320	Noxo1	2310034C04Rik|P41NOX|P41NOXA|P41NOXB|P41NOXC|Snx28|hslt	NADPH oxidase organizer 1	protein-coding	-0.807465832515937	-0.168667225062301	-0.800678699263429	-0.803230222233041	-0.806835779828811	-0.795060030555799	-0.7999492982633	-0.486090777701658	-1.19298801094455	0.690773318530889	1
Merged-chr2-156522586-2	chr2	156522486	156522686	+	596.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291122, intron 14 of 20)	intron (NM_001291122, intron 14 of 20)	-24990.0	NM_026661	68295.0	Mm.253648	NM_026661	ENSMUSG00000027628	Aar2	0610011L14Rik	AAR2 splicing factor homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-37339235-2	chr13	37339133	37339333	+	799.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6112.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	0.460431484404481	1.65040594580611	0.88387170616505	0.995505894623918	0.462879414153027	0.501193806164387	0.488986005865017	1.34467009227226	-1.28673158478713	0.449283294650632	0.915609948344177
Merged-chr1-174049570-4	chr1	174049444	174049644	+	925.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146716)	promoter-TSS (NM_146716)	-831.0	NM_146716	258711.0	Mm.377648	NM_146716	ENSMUSG00000047048	Olfr432	MOR123-2	olfactory receptor 432	protein-coding	3.8255095975027	4.79910873971057	3.20093623361763	4.11651364590871	6.12853278429553	6.05040281493211	5.89055687198158	5.2875849145181	2.10693066517375	1.20994230714092e-08	1.39547175062416e-06
Merged-chr6-54971825-3	chr6	54971689	54971889	+	851.866699	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001171007)	promoter-TSS (NM_001171007)	-128.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	-1.50561175621786	-1.47331375025452	-1.02203377115094	-1.49110398925286	-1.50334449591826	-1.47119716082604	-1.48086985756939	-1.48966786617048	-2.07776723614574	0.550394407909386	1
Merged-chr4-82918824-3	chr4	82918721	82918921	+	853.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_154662, intron 28 of 35)	intron (NR_154662, intron 28 of 35)	-33670.0	NM_009887	12622.0	Mm.6780	NM_009887	ENSMUSG00000038192	Cer1	Cerl|Cerl1|Cerr1|cer-1	cerberus 1, DAN family BMP antagonist	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-31637910-2	chr2	31637810	31638010	+	992.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2127.0	NM_001123362	381359.0	Mm.379512	NM_001123362	ENSMUSG00000079466	Prdm12	Gm998	PR domain containing 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-74214745-2	chr18	74214645	74214845	+	672.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-1467.0	NM_028868	74322.0	Mm.17537	NM_028868	ENSMUSG00000024560	Cxxc1	2410002I16Rik|5830420C16Rik|AI426635|Cfp1|Cgbp|PHF18	CXXC finger 1 (PHD domain)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24550435-2	chr17	24550335	24550535	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_013630, exon 1 of 46)	exon (NM_013630, exon 1 of 46)	485.0	NM_013630	18763.0	Mm.30435	NM_013630	ENSMUSG00000032855	Pkd1	PC1|mFLJ00285	polycystin 1, transient receptor poteintial channel interacting	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-39525967-4	chr1	39525870	39526070	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9731.0	NM_028043	52846.0	Mm.259421	NM_028043	ENSMUSG00000003135	Cnot11	2410015L18Rik|C40|D1Bwg0212e	CCR4-NOT transcription complex, subunit 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-36235440-2	chr17	36235340	36235540	+	617.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTRETN_Mm|LTR|ERVK	22406.0	NM_026308	67676.0	Mm.27131	NM_026308	ENSMUSG00000024446	Rpp21	0610037N01Rik	ribonuclease P 21 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76080583-4	chr15	76080491	76080691	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356629, intron 1 of 12)	CpG	279.0	NM_001164600	67959.0	Mm.29965	NM_028364	ENSMUSG00000002524	Puf60	2410104I19Rik|2810454F19Rik|SIAHBP1	poly-U binding splicing factor 60	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-47453883-3	chr6	47453788	47453988	+	950.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_012042)	promoter-TSS (NM_012042)	156.0	NM_001355551	26965.0	Mm.87611	NM_012042	ENSMUSG00000029686	Cul1	Cul-1	cullin 1	protein-coding	1.62513053733497	1.16067138529311	1.13246353354618	2.30028072211908	2.1935313272619	2.7370965699129	2.18669135084567	1.55608524294094	1.46658012334336	0.177067702574932	0.646649237670667
Merged-chr17-64740842-2	chr17	64740742	64740942	+	607.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008549, exon 20 of 22)	exon (NM_008549, exon 20 of 22)	-26269.0	NR_105051	101202683.0	Mm.393309	NR_105051		Dreh	-	down-regulated in hepatocellular carcinoma	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-119742798-3	chr2	119742735	119742935	+	731.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_146125, exon 1 of 7)	exon (NM_146125, exon 1 of 7)	498.0	NM_146125	228550.0	Mm.65337	NM_146125	ENSMUSG00000027296	Itpka	-	inositol 1,4,5-trisphosphate 3-kinase A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-61737269-2	chr11	61737169	61737369	+	760.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144806, intron 8 of 11)	B1_Mur4|SINE|Alu	-16470.0	NM_001033227	109342.0	Mm.441070	NM_001033227	ENSMUSG00000042371	Slc5a10	C330021F16Rik|SGLT5	solute carrier family 5 (sodium/glucose cotransporter), member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-95679974-3	chr13	95679875	95680075	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027711, intron 17 of 35)	intron (NM_027711, intron 17 of 35)	-16945.0	NM_010170	14064.0	Mm.440952	NM_010170	ENSMUSG00000021675	F2rl2	F730031A08|PAR3	coagulation factor II (thrombin) receptor-like 2	protein-coding	2.36869132533228	3.39464298325573	1.69095976714931	2.3655634025401	5.68486291643827	5.62879262349565	6.20649739327766	4.57585642054182	4.07896148423723	4.91080745493126e-14	2.15560492113166e-11
Merged-chr13-64254324-3	chr13	64254222	64254422	+	751.083313	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	intron (NR_045798, intron 1 of 2)	B1_Mus2|SINE|Alu	5622.0	NR_045798	66503.0	Mm.443331	NR_045798	ENSMUSG00000097101	1810034E14Rik	-	RIKEN cDNA 1810034E14 gene	ncRNA	0.928168786850474	0.462407860932915	1.04027197671846	0.44810158647784	1.03060432210197	0.46422150819349	0.45612515603896	1.1057620469047	0.284021559398786	0.874037532044599	1
Merged-chr6-113645050-4	chr6	113644933	113645133	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 1 of 11)	intron (NM_001113553, intron 1 of 11)	6566.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-62499679-2	chr10	62499579	62499779	+	865.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358965, intron 2 of 3)	AT_rich|Low_complexity|Low_complexity	8078.0	NM_011157	19073.0	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-122450476-4	chr2	122450394	122450594	+	854.9249880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356532, intron 6 of 17)	MTC|LTR|ERVL-MaLR	9674.0	NM_001356532	269346.0	Mm.29510	NM_172980	ENSMUSG00000027219	Slc28a2	2010208B10Rik|B430217P18|BB152493|Cnt2|SPNT	solute carrier family 28 (sodium-coupled nucleoside transporter), member 2	protein-coding	1.95891810423095	1.55805613438914	2.22350782305991	1.94254378505465	2.32099279759102	1.93080872587417	2.00976184107803	1.95184099591612	0.334922869589575	0.719182264908233	0.998431161219273
Merged-chr2-153444385-5	chr2	153444305	153444505	+	945.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001001986)	promoter-TSS (NM_001001986)	74.0	NM_001001986	329540.0	Mm.50600	NM_001001986	ENSMUSG00000061411	Nol4l	4931410H15|8430427H17Rik|AI429157|Gm1636	nucleolar protein 4-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-4929471-4	chr2	4929376	4929576	+	914.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010726, intron 5 of 8)	MTC|LTR|ERVL-MaLR	10480.0	NM_010726	16922.0	Mm.391704	NM_010726	ENSMUSG00000026664	Phyh	AI256161|AI265699|Lnap1|PAHX	phytanoyl-CoA hydroxylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30980018-4	chr2	30979949	30980149	+	940.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_144885, exon 3 of 9)	exon (NM_144885, exon 3 of 9)	1892.0	NM_144885	227707.0	Mm.235238	NM_144885	ENSMUSG00000026851	BC005624	-	cDNA sequence BC005624	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24881890-2	chr17	24881790	24881990	+	976.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001355396)	TTS (NM_001355396)	3120.0	NM_008340	16005.0	Mm.3135	NM_008340	ENSMUSG00000046070	Igfals	ALS|Albs|mKIAA4111	insulin-like growth factor binding protein, acid labile subunit	protein-coding	-0.25726285726414	-0.185696363599609	-0.410863370419785	-0.415066419681707	-0.421053828150813	0.610098616364945	-0.409666886143465	-0.414330159240726	2.14250863057504	0.381399953752186	1
Merged-chr18-63694810-1	chr18	63694710	63694910	+	542.0	f1_c57bl6.idr	Intergenic	RLTR1C|LTR|ERV1	-2451.0	NM_016792	53382.0	Mm.19169	NM_016792	ENSMUSG00000024583	Txnl1	32kDa|TRP32|Txnl	thioredoxin-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-110909352-2	chr8	110909252	110909452	+	620.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-6864.0	NR_052009	234730.0	Mm.102591	NM_172283	ENSMUSG00000033703	Fuk	1110046B12Rik|AI303278	fucokinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-34388593-4	chr7	34388521	34388721	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025948, intron 1 of 10)	intron (NM_025948, intron 1 of 10)	1084.0	NM_001360654	67070.0	Mm.276503	NM_025948	ENSMUSG00000066568	Lsm14a	2700023B17Rik|AA407828|AU017544|Tral|mRAP55A	LSM14A mRNA processing body assembly factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-52112505-2	chr1	52112405	52112605	+	618.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6933.0	NM_001357627	20846.0	Mm.277406	NM_009283	ENSMUSG00000026104	Stat1	2010005J02Rik|AA408197	signal transducer and activator of transcription 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-43748607-7	chr2	43748499	43748699	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153820)	promoter-TSS (NM_153820)	-225.0	NM_001301832	76117.0	Mm.217350	NM_153820	ENSMUSG00000049744	Arhgap15	5830480G12Rik	Rho GTPase activating protein 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53062343-2	chr4	53062241	53062441	+	990.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 31 of 49)	intron (NM_013454, intron 31 of 49)	50461.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21015946-4	chr9	21015859	21016059	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010493)	promoter-TSS (NM_010493)	19.0	NM_010493	15894.0	Mm.435508	NM_010493	ENSMUSG00000037405	Icam1	CD54|Icam-1|Ly-47|MALA-2	intercellular adhesion molecule 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-138541719-4	chr1	138541605	138541805	+	918.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021605, intron 3 of 9)	intron (NM_021605, intron 3 of 9)	78052.0	NM_021605	59125.0	Mm.143817	NM_021605	ENSMUSG00000026393	Nek7	2810460C19Rik|AU020186	NIMA (never in mitosis gene a)-related expressed kinase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-76993109-4	chr11	76993012	76993212	+	897.337524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5485.0	NM_010484	15567.0	Mm.300318	NM_010484	ENSMUSG00000020838	Slc6a4	5-HTT|AI323329|Htt|Sert	solute carrier family 6 (neurotransmitter transporter, serotonin), member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-75359802-2	chr18	75359702	75359902	+	596.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_155535, exon 7 of 7)	non-coding (NR_155535, exon 7 of 7)	7286.0	NR_155535	102636262.0	Mm.421168	NR_155535		Gm20544	-	predicted gene 20544	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-48047268-4	chr4	48047173	48047373	+	949.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015743, intron 1 of 7)	CpG	1968.0	NM_015743	18124.0	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35866560-4	chr17	35866453	35866653	+	998.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175242)	promoter-TSS (NM_175242)	-62.0	NM_175242	76448.0	Mm.359982	NM_175242	ENSMUSG00000034595	Ppp1r18	2310014H01Rik|AA407849|AI450394	protein phosphatase 1, regulatory subunit 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-3914293-4	chr11	3914173	3914373	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_153142, exon 1 of 2)	5' UTR (NM_153142, exon 1 of 2)	391.0	NM_153142	103710.0	Mm.171514	NM_153142	ENSMUSG00000048807	Slc35e4	A330108F03Rik|AI414849|AI536442	solute carrier family 35, member E4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-10233086-4	chr1	10232984	10233184	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001102430)	promoter-TSS (NM_001102430)	-414.0	NM_001102430	211673.0	Mm.229141	NM_001102430	ENSMUSG00000067851	Arfgef1	ARFGEP1|BIG1|D130059B05Rik|D730028O18Rik|P200	ADP-ribosylation factor guanine nucleotide-exchange factor 1(brefeldin A-inhibited)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-161748293-3	chr1	161748178	161748378	+	623.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40217.0	NM_001205243	14103.0	Mm.3355	NM_010177	ENSMUSG00000000817	Fasl	APT1LG1|CD178|CD95-L|CD95L|Fas-L|Faslg|Tnfsf6|Tnlg1a|gld	Fas ligand (TNF superfamily, member 6)	protein-coding	2.39510255683243	2.55666296256724	2.70391167592197	2.72683730324506	2.85241805517559	2.57519663652546	1.8022128424172	3.13285984680032	0.181690825866899	0.812980699987017	0.998431161219273
Merged-chr10-26779569-3	chr10	26779452	26779652	+	655.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176837, intron 1 of 14)	intron (NM_176837, intron 1 of 14)	7040.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-107037729-1	chr3	107037629	107037829	+	647.0	f0_balb.idr	exon (NM_008418, exon 1 of 1)	exon (NM_008418, exon 1 of 1)	1567.0	NM_008418	16491.0	Mm.30640	NM_008418	ENSMUSG00000047959	Kcna3	Kca1-3|Kv1.3|Mk-3	potassium voltage-gated channel, shaker-related subfamily, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80907846-2	chr10	80907746	80907946	+	580.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_010722, intron 2 of 11)	intron (NM_010722, intron 2 of 11)	-1434.0	NM_001347140	16907.0	Mm.7362	NM_010722	ENSMUSG00000062075	Lmnb2	-	lamin B2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75564376-4	chr11	75564271	75564471	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199284, intron 9 of 13)	intron (NM_001199284, intron 9 of 13)	12942.0	NR_039553	100628624.0		NR_039553	ENSMUSG00000093100	Mir3971	mmu-mir-3971|mu-mir-3971	microRNA 3971	ncRNA	2.44550541829878	1.42041072879528	3.11627178112878	2.75079545929723	2.37301908966367	2.28162537595927	2.34245720543996	1.81308255731775	-0.774779585096794	0.383377447260927	0.874368764206679
Merged-chr11-54156085-4	chr11	54155980	54156180	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR50|LTR|ERVL	55156.0	NM_011031	18452.0	Mm.3705	NM_011031	ENSMUSG00000018906	P4ha2	AA407196|C76437|P4hl	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-26918139-2	chr2	26918039	26918239	+	612.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_013678, intron 3 of 5)	intron (NM_013678, intron 3 of 5)	-1609.0	NM_013677	20930.0	Mm.347512	NM_013677	ENSMUSG00000015790	Surf1	0610010F23Rik|Surf-1	surfeit gene 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-139231354-1	chr7	139231254	139231454	+	832.0	f1_balb.idr	intron (NM_027164, intron 8 of 10)	intron (NM_027164, intron 8 of 10)	-17128.0	NM_001033206	101631.0	Mm.334300	NM_001033206	ENSMUSG00000060260	Pwwp2b	AI594893|D7Ertd517e|D930023J19Rik|Pwwp2	PWWP domain containing 2B	protein-coding	1.63796167141008	1.63429988611791	0.93297915908951	1.40861770861469	1.22257077097814	1.35642919298736	1.14238130964966	1.83185643708747	-0.0511068392518985	0.966804628924629	0.998431161219273
Merged-chr4-147962558-2	chr4	147962458	147962658	+	578.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21663.0	NM_029841	77034.0	Mm.183076	NM_029841	ENSMUSG00000044496	2510039O18Rik	Kiaa2013	RIKEN cDNA 2510039O18 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-32135808-4	chr5	32135706	32135906	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008037)	promoter-TSS (NM_008037)	-666.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-9804752-3	chr1	9804646	9804846	+	824.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177547, intron 1 of 16)	Lx9|LINE|L1	6616.0	NM_177547	170755.0	Mm.336410	NM_133220	ENSMUSG00000025915	Sgk3	2510015P22Rik|A330005P07Rik|Cisk|fy|fz	serum/glucocorticoid regulated kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128269357-2	chr10	128269257	128269457	+	888.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_133997, exon 2 of 2)	exon (NM_133997, exon 2 of 2)	-1141.0	NM_019963	20847.0	Mm.293120	NM_019963	ENSMUSG00000040033	Stat2	1600010G07Rik|AW496480	signal transducer and activator of transcription 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125218761-1	chr6	125218661	125218861	+	563.666687	f0_c57.idr	intron (NM_001080557, intron 2 of 3)	intron (NM_001080557, intron 2 of 3)	3180.0	NM_009496	22317.0	Mm.32321	NM_009496	ENSMUSG00000030337	Vamp1	Syb-1|Syb1|VAMP-1|lew	vesicle-associated membrane protein 1	protein-coding	1.91351477446118	0.855406495957482	0.838832371031683	1.20856689239362	1.52073960796487	0.859087491406106	1.41197661519949	1.97304313290196	0.675027609331102	0.626641876199916	0.980912176761026
Merged-chr1-64222814-6	chr1	64222727	64222927	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-101438.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-78395786-4	chr9	78395692	78395892	+	999.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001191044)	promoter-TSS (NM_001191044)	15.0	NM_001191044	100048658.0	Mm.158166	NM_001191044	ENSMUSG00000070291	Ddx43	-	DEAD (Asp-Glu-Ala-Asp) box polypeptide 43	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55235027-2	chr19	55234927	55235127	+	614.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081076, intron 3 of 20)	intron (NM_001081076, intron 3 of 20)	6209.0	NM_001081076	73707.0	Mm.489987	NM_001081076	ENSMUSG00000055523	Gucy2g	2410077I05Rik|GC-G	guanylate cyclase 2g	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-158134033-3	chr2	158133909	158134109	+	874.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009373, intron 4 of 12)	intron (NM_009373, intron 4 of 12)	12383.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-80572534-2	chr15	80572434	80572634	+	906.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289442)	promoter-TSS (NM_001289442)	-63.0	NM_001289442	17444.0	Mm.12947	NM_010815	ENSMUSG00000042351	Grap2	GRAP-2|GRB2L|GRBLG|GRID|Gads|GrbX|Grf40|GrpL|Mona|P38	GRB2-related adaptor protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-21090543-4	chr14	21090440	21090640	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001243041, intron 1 of 10)	ORR1D2|LTR|ERVL-MaLR	14388.0	NM_001243041	11534.0	Mm.188734	NM_134079	ENSMUSG00000039197	Adk	2310026J05Rik|5033405D03Rik|AI255373|AI987814|Ak	adenosine kinase	protein-coding	2.37400889157201	2.84636325890882	1.33532575673142	2.30459608920266	2.20371527234286	2.58664280559925	1.59834201378298	2.31662693821597	-0.232892032922665	0.804683402928352	0.998431161219273
Merged-chr3-95669019-7	chr3	95668912	95669112	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	10291.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-54518756-4	chr14	54518653	54518853	+	997.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1283.0	NM_001313907	27374.0	Mm.196585	NM_013768	ENSMUSG00000023110	Prmt5	Jbp1|Skb1	protein arginine N-methyltransferase 5	protein-coding	4.1571982139445	4.75266042598976	3.46602279602744	3.99001176909739	4.31928600979997	3.8137515884703	3.9278588075151	4.47355796438764	0.00150369084070279	0.997384165549768	0.999268611847349
Merged-chr7-114305651-4	chr7	114305562	114305762	+	692.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29546.0	NM_011965	26440.0	Mm.121265	NM_011965	ENSMUSG00000030751	Psma1	C2|HC2|Pros-30|alpha-type	proteasome (prosome, macropain) subunit, alpha type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-22732404-4	chr10	22732304	22732504	+	999.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011603)	promoter-TSS (NM_011603)	-957.0	NM_011603	237336.0	Mm.86670	NM_011603	ENSMUSG00000071359	Tbpl1	4732475G08|AW011832|AW491032|D18347|STD|TLF|TRF2|TRP|Tlp	TATA box binding protein-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-11557861-4	chr11	11557755	11557955	+	908.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	68589.0	NM_028669	73862.0	Mm.159077	NM_028669	ENSMUSG00000020191	Spata48	4930415F15Rik	spermatogenesis associated 48	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-16747471-4	chr1	16747367	16747567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	59011.0	NM_001159711	17087.0	Mm.116844	NM_016923	ENSMUSG00000025779	Ly96	ESOP-1|MD-2|MD2	lymphocyte antigen 96	protein-coding	3.0697951580348	3.43849207111933	2.74579265339553	3.50081819750988	2.65694068400316	2.57641333769342	3.56131857769117	1.83203806886971	-0.711628189781917	0.318977074239367	0.821951596143819
Merged-chr10-50657524-4	chr10	50657425	50657625	+	976.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198007, intron 11 of 41)	intron (NM_198007, intron 11 of 41)	64856.0	NM_198007	77987.0	Mm.222497	NM_198007	ENSMUSG00000038774	Ascc3	ASC1p200|B630009I04Rik|BC023451|D430001L07Rik|D630041L21|Helic1|RNAH	activating signal cointegrator 1 complex subunit 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-62971464-2	chr9	62971364	62971564	+	575.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019663, intron 1 of 13)	PB1D10|SINE|Alu	9415.0	NM_019663	56469.0	Mm.431253	NM_019663	ENSMUSG00000032405	Pias1	2900068C24Rik|Ddxbp1|GBP	protein inhibitor of activated STAT 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-19197677-2	chr3	19197577	19197777	+	671.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356295, intron 1 of 7)	ID_B1|SINE|B4	9382.0	NM_001356295	67472.0	Mm.45125	NM_026182	ENSMUSG00000027601	Mtfr1	1300002C08Rik|1700080D04Rik|2810026O10Rik|4930579E05Rik|Chppr|Fam54a2	mitochondrial fission regulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191197162-2	chr1	191197062	191197262	+	880.791626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13829.0	NM_007498	11910.0	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-76480717-2	chr11	76480617	76480817	+	598.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346670, intron 2 of 21)	intron (NM_001346670, intron 2 of 21)	-12252.0	NM_001291186	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-90639926-2	chr3	90639826	90640026	+	594.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14376.0	NM_199422	381493.0	Mm.291525	NM_199422	ENSMUSG00000063767	S100a7a	AY465109|Gm1020|S100A7L1|S100A7f|S100a15|S100a15a|S100a17l1	S100 calcium binding protein A7A	protein-coding	2.56799226853657	2.82196440855682	1.17852463413626	1.6112861076482	2.44690144192092	2.47476722294872	1.18588118155862	1.61977756052718	-0.3881175888547	0.721273390127892	0.998431161219273
Merged-chr10-80873057-3	chr10	80872960	80873160	+	780.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6756.0	NM_001081688	432478.0	Mm.235302	NM_001081688	ENSMUSG00000059406	Tmprss9	Serase-1B	transmembrane protease, serine 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-71051251-4	chr12	71051101	71051301	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081195, intron 11 of 23)	B3|SINE|B2	35234.0	NM_001081195	238247.0	Mm.241601	NM_001081195	ENSMUSG00000048118	Arid4a	A630009N03|A630067N03Rik|Rbbp1	AT rich interactive domain 4A (RBP1-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-68982924-2	chr11	68982824	68983024	+	581.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7739.0	NM_001285441	57785.0	Mm.143774	NM_021329	ENSMUSG00000032892	Rangrf	2400006H24Rik|Mog1|Rangnrf	RAN guanine nucleotide release factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-72280396-3	chr1	72280295	72280495	+	854.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356516, intron 1 of 6)	Tigger6a|DNA|TcMar-Tigger	3926.0	NM_023523	111175.0	Mm.281738	NM_023523	ENSMUSG00000026189	Pecr	2400003B18Rik|TERP	peroxisomal trans-2-enoyl-CoA reductase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-114175364-4	chr2	114175279	114175479	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009702)	promoter-TSS (NM_009702)	-40.0	NM_001290788	11834.0	Mm.2545	NM_009702	ENSMUSG00000040383	Aqr	AW495846|mKIAA0560	aquarius	protein-coding	5.63246200842264	6.32376758172567	5.99806741625492	5.42363762612897	6.36332450802423	6.55188641609265	6.82555937940852	5.79919513875727	0.601200445173572	0.0262832497392124	0.216782605662972
Merged-chr9-109088090-2	chr9	109087990	109088190	+	793.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025689, intron 1 of 3)	intron (NM_025689, intron 1 of 3)	5594.0	NM_025689	66658.0	Mm.128227	NM_025689	ENSMUSG00000025645	Ccdc51	5730568A12Rik|AI551049	coiled-coil domain containing 51	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-77411488-4	chr11	77411412	77411612	+	915.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291190, intron 4 of 13)	intron (NM_001291190, intron 4 of 13)	-52401.0	NM_139129	216961.0	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-84749430-3	chr3	84749339	84749539	+	914.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-66138.0	NM_001177773	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	1.95424839538568	1.91111142418649	1.68439673415105	1.23230293662933	2.33304621741624	1.92474545323749	2.44554026623025	2.3690541349205	1.51309611411839	0.119097121982875	0.541133408551742
Merged-chr13-60746476-3	chr13	60746417	60746617	+	884.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 19 of 26)	intron (NM_134062, intron 19 of 26)	39847.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-143070685-2	chr7	143070585	143070785	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_020277)	TTS (NM_020277)	1317.0	NM_001115085	56844.0	Mm.139675	NM_020285	ENSMUSG00000045752	Tssc4	AA241958|ESTM671070	tumor-suppressing subchromosomal transferable fragment 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21593507-4	chr9	21593360	21593560	+	904.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138303)	promoter-TSS (NM_138303)	-629.0	NM_138303	74766.0	Mm.475712	NM_138303	ENSMUSG00000032182	Yipf2	1300010K09Rik	Yip1 domain family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-127023221-2	chr4	127023121	127023321	+	824.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_023603, intron 2 of 9)	intron (NM_023603, intron 2 of 9)	1920.0	NM_023603	71514.0	Mm.257276	NM_023603	ENSMUSG00000028820	Sfpq	1110004P21Rik|2810416M14Rik|5730453G22Rik|9030402K04Rik|AU021830|D4Ertd314e|Gm12940|PSF|REP1	splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55874097-4	chr14	55874008	55874208	+	967.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001040072, exon 8 of 8)	3' UTR (NM_001040072, exon 8 of 8)	10148.0	NM_019820	56410.0	Mm.97163	NM_019820	ENSMUSG00000040380	Cbln3	-	cerebellin 3 precursor protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-44968396-2	chr4	44968296	44968496	+	574.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12998.0	NM_080289	76238.0	Mm.196574	NM_080289	ENSMUSG00000035637	Grhpr	1110059D05Rik|6430629L09Rik|Glxr	glyoxylate reductase/hydroxypyruvate reductase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122502321-6	chr5	122502254	122502454	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009722)	promoter-TSS (NM_009722)	-129.0	NR_027838	11938.0	Mm.227583	NM_009722	ENSMUSG00000029467	Atp2a2	9530097L16Rik|D5Wsu150e|SERCA2|SERCA2B|Serca2a|mKIAA4195	ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167735074-4	chr2	167734974	167735174	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43897.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117948102-2	chr10	117948002	117948202	+	664.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045342, exon 4 of 4)	non-coding (NR_045342, exon 4 of 4)	22643.0	NR_045342	71067.0	Mm.410793	NR_045342	ENSMUSG00000112500	4933411E08Rik	-	RIKEN cDNA 4933411E08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-47867270-3	chr8	47867167	47867367	+	793.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133791, intron 11 of 22)	intron (NM_133791, intron 11 of 22)	42785.0	NM_029383	75677.0	Mm.390033	NM_029383	ENSMUSG00000038064	Cldn22	2210404A22Rik|5330431C14Rik|9530051B05Rik	claudin 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-79646795-4	chr12	79646704	79646904	+	978.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	277929.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-108085424-4	chr3	108085322	108085522	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346665)	promoter-TSS (NM_001346665)	4.0	NM_001289720	109674.0	Mm.274335	NM_028779	ENSMUSG00000027889	Ampd2	1200014F01Rik|AI552571|Ampd-2|m4521Dajl	adenosine monophosphate deaminase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-61907353-4	chr8	61907244	61907444	+	758.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-4650.0	NM_001293772	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-113753264-2	chr11	113753168	113753368	+	807.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1453.0	NM_001163346	56699.0	Mm.293378	NM_020006	ENSMUSG00000041598	Cdc42ep4	1500041M20Rik|Borg4|CEP4	CDC42 effector protein (Rho GTPase binding) 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-43538867-4	chr17	43538765	43538965	+	963.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001254953, intron 2 of 2)	intron (NM_001254953, intron 2 of 2)	4774.0	NM_001254953	100043332.0	Mm.17626	NM_001254953	ENSMUSG00000096140	Ankrd66	AU041848|D730048J04Rik|Gm4368	ankyrin repeat domain 66	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105225164-4	chr8	105225070	105225270	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145604)	promoter-TSS (NM_145604)	-18.0	NM_145604	234678.0	Mm.27186	NM_145604	ENSMUSG00000031889	D230025D16Rik	BC006874|Lin10	RIKEN cDNA D230025D16 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-13393598-4	chr13	13393488	13393688	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031999)	promoter-TSS (NM_031999)	36.0	NM_031999	83924.0	Mm.379269	NM_031999	ENSMUSG00000021306	Gpr137b	AI788917|AU016435|AW546472|C730041E01|C80550|C80741|D13Abb1e|Tm7sf1	G protein-coupled receptor 137B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-21225197-4	chr11	21225088	21225288	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13844.0	NM_139061	245944.0	Mm.170103	NM_139061	ENSMUSG00000020128	Vps54	Hcc8|Vps54l|mSLP8|wr	VPS54 GARP complex subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-104232002-1	chr12	104231902	104232102	+	552.0	f1_balb.idr	intron (NM_009251, intron 3 of 6)	intron (NM_009251, intron 3 of 6)	-4145.0	NM_001353612	20715.0	Mm.312628	NM_009251		Serpina3g	2A2|AI119734|Spi2-1|Spi2/eb.1|Spi2A|spi2	serine (or cysteine) peptidase inhibitor, clade A, member 3G	protein-coding	0.550236705880846	1.56748809177165	1.81124433089785	0.575356808293475	0.554055407770637	2.00521461393578	0.593988680008262	0.818527278052795	-0.276915995582545	0.862379714576423	0.998431161219273
Merged-chr11-98438416-2	chr11	98438316	98438516	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001003817)	TTS (NM_001003817)	572.0	NM_025559	103742.0	Mm.259614	NM_025559	ENSMUSG00000002580	Mien1	1810046J19Rik|AI463380|Rdx12	migration and invasion enhancer 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-94094463-3	chr13	94094337	94094537	+	670.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172589, intron 1 of 3)	intron (NM_172589, intron 1 of 3)	36641.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-195205108-2	chr1	195205008	195205208	+	580.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	-28393.0	NM_007758	12902.0	Mm.235387	NM_007758	ENSMUSG00000026616	Cr2	C3DR|CD21|CD35|Cr-1|Cr-2|Cr1	complement receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-72660553-4	chr11	72660446	72660646	+	955.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025985, intron 1 of 5)	PB1D9|SINE|Alu	-29456.0	NM_009671	11736.0	Mm.10313	NM_009671	ENSMUSG00000020790	Ankfy1	Ankhzn|ZFYVE14|mKIAA1255	ankyrin repeat and FYVE domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-32704273-1	chr3	32704173	32704373	+	603.0	f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-4273.0	NM_019673	56456.0	Mm.41077	NM_019673	ENSMUSG00000027671	Actl6a	2810432C06Rik|AI851094|ARP4|Actl6|Baf53a|C79802	actin-like 6A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-54569198-3	chr14	54569111	54569311	+	854.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010590, intron 7 of 7)	intron (NM_010590, intron 7 of 7)	8450.0	NM_010590	16475.0	Mm.100253	NM_010590	ENSMUSG00000022178	Ajuba	Jub	ajuba LIM protein	protein-coding	-1.56355737717652	-1.81244775989375	-1.82128546162293	-1.82854501295842	-1.83962066705452	-1.81053259306168	-1.81928479966835	-1.82724555674025	-1.28500227969968	0.715751224811686	1
Merged-chr6-57534936-4	chr6	57534846	57535046	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175523, intron 1 of 6)	intron (NM_175523, intron 1 of 6)	480.0	NM_175523	243382.0	Mm.396893	NM_175523	ENSMUSG00000037826	Ppm1k	2900063A19Rik|A930026L03Rik|PP2Cm	protein phosphatase 1K (PP2C domain containing)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117465457-4	chr8	117465345	117465545	+	993.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6180.0	NR_106046	102465653.0		NR_106046	ENSMUSG00000098483	Mir7078	Gm27386|mmu-mir-7078	microRNA 7078	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46483788-4	chr19	46483670	46483870	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025391, intron 11 of 11)	intron (NM_001025391, intron 11 of 11)	-17878.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118379639-6	chr11	118379509	118379709	+	850.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22350.0	NM_011150	19039.0	Mm.3152	NM_011150	ENSMUSG00000033880	Lgals3bp	90K|CyCAP|MAC-2BP|Ppicap|Tango10b	lectin, galactoside-binding, soluble, 3 binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-62329737-3	chr14	62329638	62329838	+	794.888855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2330.0	NM_026001	67153.0	Mm.26040	NM_026001	ENSMUSG00000021932	Rnaseh2b	1110019N06Rik|2610207P08Rik|Dleu8	ribonuclease H2, subunit B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-34823556-4	chr1	34823473	34823673	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160236, intron 3 of 6)	intron (NM_001160236, intron 3 of 6)	19477.0	NM_174997	214469.0	Mm.120151	NM_174997	ENSMUSG00000037503	Fam168b	Mani|mKIAA4042	family with sequence similarity 168, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-165766671-4	chr1	165766578	165766778	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149310, intron 2 of 4)	intron (NR_149310, intron 2 of 4)	2920.0	NM_011804	433375.0	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-29373568-4	chr11	29373483	29373683	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_176841)	promoter-TSS (NM_176841)	-589.0	NM_176841	108686.0	Mm.338284	NM_176841	ENSMUSG00000032740	Ccdc88a	A430106J12Rik|AI848406|Ape|C130096N06Rik|C330012F17Rik|D130005J21Rik|Girdin|Giv|Grdn|Hkrp1	coiled coil domain containing 88A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3739699-2	chr12	3739599	3739799	+	885.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162465, intron 12 of 17)	intron (NM_001162465, intron 12 of 17)	-67281.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-87299862-4	chr12	87299847	87300047	+	758.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290302)	promoter-TSS (NM_001290302)	-242.0	NM_001290302	217738.0	Mm.219363	NM_001290302	ENSMUSG00000050671	Ism2	Gm264|Thsd3	isthmin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-61300420-2	chr9	61300320	61300520	+	570.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-6611.0	NR_045334	622037.0	Mm.126243	NR_045334	ENSMUSG00000111658	B930092H01Rik	-	RIKEN cDNA B930092H01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153953964-2	chr2	153953863	153954063	+	671.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001034875, intron 10 of 15)	intron (NM_001034875, intron 10 of 15)	13101.0	NM_001034875	381399.0	Mm.315572	NM_001034875	ENSMUSG00000074665	Bpifb4	Gm1006|Lplunc4	BPI fold containing family B, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-27376272-4	chr14	27376179	27376379	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027871, intron 3 of 10)	intron (NM_027871, intron 3 of 10)	14890.0	NM_001289688	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-28397916-2	chr2	28397816	28398016	+	921.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-50025.0	NM_001005420	241289.0	Mm.330095	NM_001005420	ENSMUSG00000035829	Ppp1r26	Gm347|Kiaa0649|mKIAA0649	protein phosphatase 1, regulatory subunit 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-44753737-2	chr4	44753637	44753837	+	587.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2822.0	NM_138590	319885.0	Mm.331576	NM_138590	ENSMUSG00000035649	Zcchc7	4930572I07Rik|D4Wsu132e	zinc finger, CCHC domain containing 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-49103467-3	chr11	49103364	49103564	+	865.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10293.0	NM_146337	258334.0	Mm.390388	NM_146337	ENSMUSG00000047511	Olfr1396	MOR276-2	olfactory receptor 1396	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-83074783-4	chr13	83074741	83074941	+	985.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-376508.0	NR_039537	100628621.0		NR_039537	ENSMUSG00000106655	Mir3961	mmu-mir-3961	microRNA 3961	ncRNA	2.69067738476614	2.12887293411323	1.68431482910742	2.39196786285022	2.84382334740934	2.67393902285482	2.22713675948074	2.1609942762817	0.502057757608876	0.549631360650796	0.958871228929078
Merged-chr10-78096261-4	chr10	78096172	78096372	+	995.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26904.0	NM_015790	50723.0	Mm.17819	NM_015790	ENSMUSG00000000732	Icosl	AU044799|B7-H2|B7RP-1|B7h|BG071784|GI50|GL50|GL50-B|ICOS-L|Icoslg|LICOS|Ly115l|mKIAA0653	icos ligand	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-32480409-2	chr6	32480309	32480509	+	739.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175750, intron 3 of 31)	intron (NM_175750, intron 3 of 31)	-30732.0	NR_040277	319849.0	Mm.440860	NR_040277	ENSMUSG00000086763	Plxna4os1	B230378P21Rik	plexin A4, opposite strand 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-15228356-2	chr13	15228256	15228456	+	660.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	-235367.0	NM_008130	14634.0	Mm.5098	NM_008130	ENSMUSG00000021318	Gli3	AI854843|AU023367|Bph|GLI3-190|GLI3FL|Pdn|Xt|add	GLI-Kruppel family member GLI3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-81970090-2	chr11	81969990	81970190	+	840.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1694.0	NM_001034013	11418.0	Mm.234998	NM_007384	ENSMUSG00000020704	Asic2	ACIC2|Accn1|BNC1|BNaC1|BNaC1a|Mdeg	acid-sensing (proton-gated) ion channel 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-132212309-2	chr1	132212209	132212409	+	777.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033250, intron 1 of 3)	intron (NM_001033250, intron 1 of 3)	-14005.0	NM_001311103	213409.0	Mm.426321	NM_001033250	ENSMUSG00000079330	Lemd1	4930540I23Rik|6430514M23Rik|AI428128|LEMP-1	LEM domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-4203133-2	chr8	4203033	4203233	+	582.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346730, intron 13 of 19)	intron (NM_001346730, intron 13 of 19)	14179.0	NM_207203	73072.0	Mm.477379	NM_207203	ENSMUSG00000064125	Prr36	-	proline rich 36	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91739235-4	chr16	91739120	91739320	+	851.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110276, intron 1 of 15)	B4A|SINE|B4	9849.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165992615-4	chr2	165992487	165992687	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008679)	promoter-TSS (NM_008679)	-50.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70540481-4	chr8	70540410	70540610	+	884.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007924, intron 1 of 11)	intron (NM_007924, intron 1 of 11)	835.0	NM_007924	13716.0	Mm.271973	NM_007924	ENSMUSG00000070002	Ell	Ell1|Men	elongation factor RNA polymerase II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-31298820-4	chr5	31298719	31298919	+	908.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144909, intron 3 of 18)	intron (NM_144909, intron 3 of 18)	1238.0	NM_144909	231103.0	Mm.100043	NM_144909	ENSMUSG00000059434	Gckr	GKRP	glucokinase regulatory protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-113237731-4	chr6	113237635	113237835	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026849)	promoter-TSS (NM_026849)	-108.0	NM_001362183	97287.0	Mm.197816	NM_026849	ENSMUSG00000030269	Mtmr14	1110061O04Rik|AW553738|C76151	myotubularin related protein 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129913952-2	chr4	129913870	129914070	+	599.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7744.0	NR_045190	319894.0	Mm.59196	NR_045190	ENSMUSG00000086369	E330017L17Rik	-	RIKEN cDNA E330017L17 gene	ncRNA	0.694555244098063	1.39912363049051	0.417598776632214	0.410568054562938	0.70216589247335	0.820766125707629	0.419598841278793	0.883056252875065	-0.480832400286535	0.7747834217568	1
Merged-chr1-171287977-4	chr1	171287888	171288088	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013919)	promoter-TSS (NM_013919)	-27.0	NM_013919	30941.0	Mm.27510	NM_013919	ENSMUSG00000053483	Usp21	ESTM28|Usp16|Usp23|W53272	ubiquitin specific peptidase 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-121707474-4	chr7	121707370	121707570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033173)	promoter-TSS (NM_001033173)	-217.0	NM_001033173	76179.0	Mm.122538	NM_001033173	ENSMUSG00000063317	Usp31	6330567E21Rik|mKIAA1203	ubiquitin specific peptidase 31	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84832376-5	chr8	84832371	84832571	+	970.3666380000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033145)	promoter-TSS (NR_033145)	189.0	NM_183358	102060.0	Mm.489649	NM_183358	ENSMUSG00000033751	Gadd45gip1	2310040G17Rik|AI425883|Crif1|MRP-L59|Plinp1	growth arrest and DNA-damage-inducible, gamma interacting protein 1	protein-coding	2.64622621957157	2.57101495514756	3.39154276080919	2.55257021433899	2.66835952678394	3.45382148584374	2.99756409569737	3.16966146215199	0.458198728572002	0.492573410724368	0.935603553858201
Merged-chr8-84661265-3	chr8	84661149	84661349	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010499)	TTS (NM_010499)	1603.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	-2.18308165884198	-2.15547475440471	-2.16382331017202	-2.1706810624505	-2.18114370519566	-2.15366558754311	-2.03057248461154	-2.16945352807143	0.759018020146679	0.829933115115583	1
Merged-chr10-116949891-4	chr10	116949802	116950002	+	706.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_038025)	promoter-TSS (NR_038025)	551.0	NM_001359645	216363.0	Mm.336394	NM_001003950	ENSMUSG00000064181	Rab3ip	B230311A06|Gtpat12|Rabin3	RAB3A interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-64391628-2	chr7	64391528	64391728	+	924.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355124)	promoter-TSS (NM_001355124)	608.0	NM_026483	67973.0	Mm.26973	NM_026483	ENSMUSG00000030521	Mphosph10	2810453H10Rik|5730405D16Rik|AI326008	M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein)	protein-coding	-2.18233058068552	-2.15536956715525	-2.16352280018114	-2.04193253143548	-2.18043796738662	-2.15360272754651	-2.16167708693786	-2.16902129354933	-0.683654500252594	0.846597994014493	1
Merged-chr17-35879751-4	chr17	35879660	35879860	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026987)	promoter-TSS (NM_026987)	-18.0	NM_026987	69192.0	Mm.390986	NM_026987	ENSMUSG00000024422	Dhx16	2410006N22Rik|DBP2|Ddx16|mKIAA0577	DEAH (Asp-Glu-Ala-His) box polypeptide 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111678603-2	chr12	111678503	111678703	+	755.833313	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001099792, exon 2 of 4)	5' UTR (NM_001099792, exon 2 of 4)	498.0	NM_177374	328162.0	Mm.425747	NM_177374	ENSMUSG00000060950	Trmt61a	6720458F09Rik|AI606093|Gcd14|Trm61	tRNA methyltransferase 61A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-32695009-2	chr9	32694909	32695109	+	715.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1033.0	NM_011808	23871.0	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-57194071-4	chr17	57193943	57194143	+	985.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_019418, exon 1 of 4)	exon (NM_019418, exon 1 of 4)	138.0	NM_019418	50930.0	Mm.483369	NM_019418	ENSMUSG00000005824	Tnfsf14	HVEM-L|HVEML|LIGHT|LTg|Ly113|Tnlg1d	tumor necrosis factor (ligand) superfamily, member 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-38298177-4	chr18	38298064	38298264	+	996.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361267, intron 2 of 9)	intron (NM_001361267, intron 2 of 9)	1359.0	NM_001164621	56736.0	Mm.228903	NM_020012	ENSMUSG00000060450	Rnf14	2310075C09Rik|2610005D23Rik|AA986456|AU041447|D18Ertd188e|D7Bwg0165e|Triad2	ring finger protein 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47794313-2	chr17	47794213	47794413	+	607.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8569.0	NM_011549	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-112990916-2	chr12	112990816	112991016	+	758.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028193, intron 2 of 17)	G-rich|Low_complexity|Low_complexity	9705.0	NM_028193	72308.0	Mm.196721	NM_028193	ENSMUSG00000011158	Brf1	2510002F24Rik|GTF3B|TAF3C|TAFIII90|TFIIIB90|mTFIIIB90	BRF1, RNA polymerase III transcription initiation factor 90 kDa subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-84620660-3	chr2	84620562	84620762	+	797.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355064, intron 4 of 18)	intron (NM_001355064, intron 4 of 18)	28818.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59089933-4	chr15	59089825	59090025	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR33|LTR|ERVL	-7899.0	NM_144800	211401.0	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-66274994-2	chr14	66274894	66275094	+	674.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	6058.0	NM_001162366	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-3161399-3	chr11	3161265	3161465	+	929.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030207, intron 9 of 32)	intron (NM_030207, intron 9 of 32)	32098.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-136554977-4	chr6	136554863	136555063	+	933.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019426, intron 1 of 14)	intron (NM_019426, intron 1 of 14)	36112.0	NM_019426	54343.0	Mm.173271	NM_019426	ENSMUSG00000030213	Atf7ip	2610204M12Rik|AM|Mcaf1	activating transcription factor 7 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-122349333-4	chr9	122349229	122349429	+	910.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2287.0	NR_152865	67469.0	Mm.280254	NM_026179	ENSMUSG00000032540	Abhd5	1300003D03Rik|2010002J10Rik|CDS|CGI-58|IECN5|NCIE2	abhydrolase domain containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115079399-3	chr11	115079356	115079556	+	917.095215	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11975.0	NM_001163753	58222.0	Mm.143789	NM_021411	ENSMUSG00000020732	Rab37	B230331O03Rik|B230354I04Rik	RAB37, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-96502214-4	chr10	96502121	96502321	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-114780.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122639704-3	chr5	122639616	122639816	+	759.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4195.0	NM_001038839	18439.0	Mm.42026	NM_011027	ENSMUSG00000029468	P2rx7	AI467586|P2X(7)|P2X7R	purinergic receptor P2X, ligand-gated ion channel, 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36572930-4	chr1	36572806	36573006	+	843.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001126046, intron 12 of 14)	intron (NM_001126046, intron 12 of 14)	-14525.0	NM_001126047	20353.0	Mm.29558	NM_001126047	ENSMUSG00000026121	Sema4c	AI426163|M-Sema F|Semacl1|Semaf|Semai|sema I	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-53904892-1	chr18	53904792	53904992	+	693.0	f1_balb.idr	intron (NM_152809, intron 3 of 12)	intron (NM_152809, intron 3 of 12)	42779.0	NM_152809	70425.0	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-33429523-4	chr2	33429387	33429587	+	836.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085507, intron 1 of 2)	L2a|LINE|L2	1837.0	NM_001085507	241311.0	Mm.296512	NM_001085507	ENSMUSG00000068966	Zbtb34	Gm349|mKIAA1993	zinc finger and BTB domain containing 34	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-17586953-3	chr6	17586885	17587085	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50025.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	3.82598393343563	3.75516049365687	3.6888839057039	4.06226532466978	1.7335451543331	1.4106044607203	1.66666953522028	1.29039873700559	-4.88410804991091	6.18894870886197e-07	4.31715154703057e-05
Merged-chr2-101796555-4	chr2	101796534	101796734	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355625, intron 1 of 8)	CpG	1073.0	NM_175181	72446.0	Mm.24138	NM_175181	ENSMUSG00000032841	Prr5l	2600010E01Rik|4833411O04Rik|Protor-2|Protor2	proline rich 5 like	protein-coding	5.19504072179906	5.2783876948924	5.1907724168167	3.99220487490467	5.104424527027	5.00664859391563	4.62493747201192	4.38605382253269	-0.227744480246077	0.547576545680486	0.957826773868235
Merged-chr11-44617121-4	chr11	44616964	44617164	+	833.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1036.0	NM_001290711	13591.0	Mm.439662	NM_007897	ENSMUSG00000057098	Ebf1	Ebf|O/E-1|OE-1|Olf-1|Olf1	early B cell factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-47455523-4	chr6	47455391	47455591	+	974.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355550, intron 1 of 21)	intron (NM_001355550, intron 1 of 21)	734.0	NM_001355550	26965.0	Mm.87611	NM_012042	ENSMUSG00000029686	Cul1	Cul-1	cullin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-77041748-4	chr16	77041649	77041849	+	978.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013918, intron 3 of 23)	intron (NM_013918, intron 3 of 23)	27680.0	NM_013918	30940.0	Mm.40986	NM_013918	ENSMUSG00000022867	Usp25	-	ubiquitin specific peptidase 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139357256-2	chr5	139357156	139357356	+	735.900024	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001160265)	TTS (NM_001160265)	4639.0	NM_001160265	545817.0	Mm.482474	NM_001160265	ENSMUSG00000029541	Cyp2w1	Gm455	cytochrome P450, family 2, subfamily w, polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153058555-1	chr2	153058455	153058655	+	823.833313	f1_c57bl6.idr	Intergenic	Intergenic	-7400.0	NM_145536	228788.0	Mm.299979	NM_145536	ENSMUSG00000027474	Ccm2l	-	cerebral cavernous malformation 2-like	protein-coding	3.49759809803558	3.0761921854703	3.60514046672253	3.82426343618437	2.4087967536675	1.93675276969892	2.30330031255607	2.67235945477928	-2.08914063613336	0.0017776544141728	0.0306397578043517
Merged-chr2-167419378-4	chr2	167419276	167419476	+	934.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-2334.0	NM_148929	77031.0	Mm.278924	NM_148929	ENSMUSG00000039463	Slc9a8	1200006P13Rik|6430709P13Rik|AI182282|NHE-8|NHE8	solute carrier family 9 (sodium/hydrogen exchanger), member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-19934749-6	chr10	19934693	19934893	+	839.055542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008580, exon 1 of 30)	exon (NM_008580, exon 1 of 30)	267.0	NM_008580	26408.0	Mm.6595	NM_008580	ENSMUSG00000071369	Map3k5	7420452D20Rik|ASK|ASK1|MAPKKK5|Mekk5	mitogen-activated protein kinase kinase kinase 5	protein-coding	0.715497605082471	0.461439370804339	1.14550698112646	0.618448614201973	1.11573085469502	0.980659221168336	0.455081546606886	0.448064358810131	0.140430200826494	0.933927595312462	1
Merged-chr12-80109850-3	chr12	80109774	80109974	+	858.714294	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007564, exon 2 of 2)	exon (NM_007564, exon 2 of 2)	3139.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-61678016-2	chr10	61677916	61678116	+	650.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_126477, intron 1 of 1)	URR1B|DNA|hAT-Charlie	-2269.0	NM_001358488	20224.0	Mm.391794	NM_009120	ENSMUSG00000020088	Sar1a	1600019H17Rik|Sara|Sara1	secretion associated Ras related GTPase 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-78552514-1	chr1	78552414	78552614	+	827.0	f1_balb.idr	Intergenic	Lx|LINE|L1	41454.0	NM_026713	68393.0	Mm.41325	NM_026713	ENSMUSG00000012187	Mogat1	0610030A14Rik|1110064N14Rik|Dgat2l|Dgat2l1|MGAT1|WI1-2612I11.1|mDC2	monoacylglycerol O-acyltransferase 1	protein-coding	-0.947981310248532	-1.06986221617136	-1.08111523493323	-1.08767915324048	-0.521931119253548	-1.06742364006257	-1.07856779814469	-1.08733643431101	1.79154211409157	0.579573222034837	1
Merged-chr11-77444997-4	chr11	77444763	77444963	+	898.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177710, intron 13 of 14)	intron (NM_177710, intron 13 of 14)	-19050.0	NM_139129	216961.0	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-103392011-2	chr12	103391911	103392111	+	553.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026580, intron 1 of 5)	intron (NM_026580, intron 1 of 5)	3329.0	NM_001177841	68149.0	Mm.127378	NM_026580	ENSMUSG00000021203	Otub2	2010015L18Rik|4930586I02Rik|AI413508|AW557219|OTB2|OTU2	OTU domain, ubiquitin aldehyde binding 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-24613184-3	chr13	24613069	24613269	+	629.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286100, intron 1 of 22)	intron (NM_001286100, intron 1 of 22)	-1437.0	NM_001286101	193385.0	Mm.217319	NM_029679	ENSMUSG00000036006	Ripor2	Fam65b	RHO family interacting cell polarization regulator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33964638-2	chr16	33964538	33964738	+	643.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009471, intron 1 of 5)	B2_Mm2|SINE|B2	2400.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56133957-4	chr17	56133860	56134060	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013662)	promoter-TSS (NM_013662)	-108.0	NM_013662	20359.0	Mm.8029	NM_013662	ENSMUSG00000001227	Sema6b	Sema|Seman|VIb|semaZ	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-22795214-2	chr2	22795135	22795335	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_019456, intron 1 of 13)	intron (NM_019456, intron 1 of 13)	20908.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-40731477-2	chr13	40731377	40731577	+	784.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301674, intron 2 of 7)	CpG	-1020.0	NM_001122948	21418.0	Mm.85544	NM_011547	ENSMUSG00000021359	Tfap2a	AP-2|AP2alpha|Ap-2 (a)|Ap2|Ap2tf|Tcfap2a	transcription factor AP-2, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-31938442-2	chr6	31938342	31938542	+	932.3333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-111846.0	NM_029587	76382.0	Mm.23510	NM_029587	ENSMUSG00000029766	1700012A03Rik	AI429084	RIKEN cDNA 1700012A03 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-41470071-2	chr16	41469971	41470171	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361281, intron 2 of 8)	Lx8|LINE|L1	-62755.0	NM_001347236	268890.0	Mm.310524	NM_175548	ENSMUSG00000061080	Lsamp	5430428I19|AW046674|B130007O04Rik|D930023J12Rik|Gm29907|Lam|Lamp	limbic system-associated membrane protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-24112601-1	chr7	24112501	24112701	+	760.0	f0_balb.idr	intron (NM_021307, intron 1 of 4)	intron (NM_021307, intron 1 of 4)	281.0	NM_021307	57745.0	Mm.82678	NM_021307	ENSMUSG00000052675	Zfp112	Znf112|Znf228	zinc finger protein 112	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-23573045-3	chr13	23572984	23573184	+	772.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_178195)	TTS (NM_178195)	1106.0	NM_178195	319180.0		NM_178195	ENSMUSG00000069268	Hist1h2bf	-	histone cluster 1, H2bf	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-115251764-4	chr7	115251665	115251865	+	927.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	300491.0	NR_040319	101786.0	Mm.395157	NR_040317	ENSMUSG00000108379	A730082K24Rik	AU044236	RIKEN cDNA A730082K24 gene	ncRNA	1.15098842687139	1.01543106964086	1.43927739687679	1.20631454843636	2.37856034524159	1.83821068982069	1.4508729626305	2.44616579315462	2.92545972214923	0.0129675915397131	0.131088269412626
Merged-chr15-9111089-4	chr15	9110952	9111152	+	896.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001285980)	TTS (NM_001285980)	29402.0	NM_013787	27401.0	Mm.35584	NM_013787	ENSMUSG00000054115	Skp2	4930500A04Rik|FBXL1|FWD1|p45	S-phase kinase-associated protein 2 (p45)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-76110845-4	chr14	76110764	76110964	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013745)	promoter-TSS (NM_013745)	-27.0	NM_013745	27275.0	Mm.21138	NM_013745	ENSMUSG00000022009	Nufip1	Nufip	nuclear fragile X mental retardation protein interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-55449443-3	chr11	55449386	55449586	+	941.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009720, intron 3 of 3)	intron (NM_009720, intron 3 of 3)	11722.0	NM_009720	11927.0	Mm.217759	NM_009720	ENSMUSG00000018585	Atox1	AI256639|Atx1	antioxidant 1 copper chaperone	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-86753521-2	chr11	86753421	86753621	+	656.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001003908, intron 1 of 31)	B3|SINE|B2	4046.0	NM_001003908	67300.0	Mm.254588	NM_001003908	ENSMUSG00000047126	Cltc	3110065L21Rik|CHC|R74732	clathrin, heavy polypeptide (Hc)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-98750046-2	chr12	98749946	98750146	+	591.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_027648, intron 2 of 12)	intron (NR_027648, intron 2 of 12)	3078.0	NM_029334	75553.0	Mm.25549	NM_029334	ENSMUSG00000021012	Zc3h14	1010001P15Rik|1700016A15Rik|2700069A02Rik|AU014748	zinc finger CCCH type containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-32424200-2	chr9	32424100	32424300	+	734.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_008026, exon 9 of 9)	exon (NM_008026, exon 9 of 9)	30215.0	NM_001168354	56379.0	Mm.390168	NM_019659	ENSMUSG00000041248	Kcnj1	Kir1.1|ROMK|Romk2	potassium inwardly-rectifying channel, subfamily J, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-46179218-3	chr14	46179112	46179312	+	935.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	95185.0	NR_002875	218963.0	Mm.282093	NR_002875		Gm1821	-	ubiquitin pseudogene	pseudo	1.27355513360761	1.84863492686443	3.01945305482873	1.38615162226594	4.0242596740807	4.81768782224008	4.10823566939683	3.8231665459485	3.56013765302619	1.47537165369608e-06	9.03138219441103e-05
Merged-chr16-55848045-4	chr16	55847958	55848158	+	980.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001134457, intron 5 of 5)	intron (NM_001134457, intron 5 of 5)	-9417.0	NM_001159395	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-108283018-2	chr11	108282918	108283118	+	758.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011101, intron 2 of 16)	MIR|SINE|MIR	60870.0	NM_011101	18750.0	Mm.222178	NM_011101	ENSMUSG00000050965	Prkca	AI875142|Pkca	protein kinase C, alpha	protein-coding	0.658769835194965	1.9999793909879	1.3248817321212	0.685588663988246	0.662848048567772	2.01855013852995	1.61749581459879	0.688333076325287	0.268046521603835	0.860779308110473	0.998431161219273
Merged-chr12-35030151-1	chr12	35030051	35030251	+	593.0	f0_balb.idr	Intergenic	MER63C|DNA|hAT-Blackjack	-17038.0	NM_001014973	217463.0	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	-2.18243820993087	-2.15538464093652	-2.16356586349869	-2.17028616330028	-2.18053909940952	-2.15361173587851	-2.16171381403791	-2.0403552525549	0.759018020146679	0.829933115115583	1
Merged-chr15-64242678-4	chr15	64242586	64242786	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 3 of 28)	intron (NM_001276461, intron 3 of 28)	69987.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-121501416-2	chr10	121501316	121501516	+	680.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER58A|DNA|hAT-Charlie	-25166.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-35595048-3	chr7	35594951	35595151	+	750.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152519, intron 2 of 28)	intron (NR_152519, intron 2 of 28)	8804.0	NR_152519	245886.0	Mm.272620	NM_145633	ENSMUSG00000034867	Ankrd27	AA408090|BC016493|D330003H11Rik|Varp	ankyrin repeat domain 27 (VPS9 domain)	protein-coding	2.69385058860698	3.42733850612129	2.80975194683749	2.1015930896118	3.15970010591387	3.3643766314582	3.81160282485559	3.23871425984602	0.981810084117214	0.1277172429028	0.559030175729842
Merged-chr4-142082517-2	chr4	142082417	142082617	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145402, intron 1 of 2)	intron (NM_145402, intron 1 of 2)	-1781.0	NR_027137	100038693.0	Mm.402714	NR_027137	ENSMUSG00000073728	Tmem51os1	Gm10565|Tmem51as1	Tmem51 opposite strand 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-44529474-4	chr11	44529308	44529508	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166553, intron 2 of 5)	intron (NM_001166553, intron 2 of 5)	10031.0	NM_001166553	74315.0	Mm.156771	NM_028862	ENSMUSG00000019189	Rnf145	3732413I11Rik|TMRF1	ring finger protein 145	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-98977581-2	chr9	98977481	98977681	+	549.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8792.0	NM_011810	23873.0	Mm.74605	NM_011810	ENSMUSG00000032463	Faim	-	Fas apoptotic inhibitory molecule	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-91051246-4	chr8	91051177	91051377	+	990.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001310530, exon 38 of 38)	exon (NM_001310530, exon 38 of 38)	-18780.0	NM_001282001	19651.0	Mm.235580	NM_011250	ENSMUSG00000031666	Rbl2	PRB2|RBR-2|Rb2|p130	RB transcriptional corepressor like 2	protein-coding	3.00690207564306	1.26926579123139	1.51773482094567	3.04816957772371	1.61502691867625	2.38781578707816	3.51383092472704	1.47834479066379	0.137869015132648	0.892873417884358	0.998431161219273
Merged-chr9-47730830-2	chr9	47730730	47730930	+	573.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	87378.0	NR_046048	100038460.0	Mm.447649	NR_046048		Gm10677	-	predicted gene 10677	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100624954-2	chr11	100624854	100625054	+	632.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_028024, exon 3 of 4)	exon (NM_028024, exon 3 of 4)	1999.0	NM_028024	71966.0	Mm.274734	NM_028024	ENSMUSG00000017837	Nkiras2	2410003M04Rik|4930527H08Rik|D630018G21Rik|KBRAS2	NFKB inhibitor interacting Ras-like protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-87804929-4	chr6	87804826	87805026	+	822.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104478, intron 1 of 2)	intron (NR_104478, intron 1 of 2)	4831.0	NM_133717	69834.0	Mm.37380	NM_133717	ENSMUSG00000030055	Rab43	1810048P08Rik|2500004H21Rik|AW490415	RAB43, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-55552299-3	chr15	55552209	55552409	+	900.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026759, intron 2 of 6)	intron (NM_026759, intron 2 of 6)	5003.0	NM_026759	68537.0	Mm.236795	NM_026759	ENSMUSG00000022370	Mrpl13	1110002D09Rik	mitochondrial ribosomal protein L13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-37851723-3	chr19	37851624	37851824	+	678.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	153916.0	NM_007811	13082.0	Mm.42230	NM_007811	ENSMUSG00000024987	Cyp26a1	Cyp26|P450RA|P450RAI|RAH	cytochrome P450, family 26, subfamily a, polypeptide 1	protein-coding	1.81084157386102	1.33369222415087	2.61158144477246	2.43485703610746	3.13540574190539	1.34197006532248	2.89555166913077	2.21600581632525	0.895153589891505	0.363527538911397	0.858903333095609
Merged-chr15-100133690-3	chr15	100133591	100133791	+	950.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159361, intron 3 of 37)	intron (NM_001159361, intron 3 of 37)	-20705.0	NM_172819	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191224962-4	chr1	191224865	191225065	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151547, intron 1 of 1)	intron (NR_151547, intron 1 of 1)	511.0	NR_151547	100504360.0	Mm.16927	NM_001033188		D730003I15Rik	AU020850	RIKEN cDNA D730003I15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-86902624-4	chr4	86902512	86902712	+	979.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290543, intron 4 of 5)	intron (NM_001290543, intron 4 of 5)	28198.0	NM_139306	230379.0	Mm.45019	NM_139306	ENSMUSG00000038007	Acer2	2410116I05Rik|Asah3l|CRG-L1|maCER2	alkaline ceramidase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-50603915-4	chr9	50603820	50604020	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025848)	promoter-TSS (NM_025848)	19.0	NM_013897	30057.0	Mm.335149	NM_013897	ENSMUSG00000039016	Timm8b	Tim8b	translocase of inner mitochondrial membrane 8B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-46599330-1	chr12	46599230	46599430	+	608.0	f1_balb.idr	Intergenic	Intergenic	219445.0	NM_021361	664883.0	Mm.247195	NM_021361	ENSMUSG00000021047	Nova1	9430099M15Rik|G630039L02|Nova-1	neuro-oncological ventral antigen 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-164074667-1	chr2	164074567	164074767	+	573.0	f0_balb.idr	intron (NM_021420, intron 1 of 10)	MIR|SINE|MIR	489.0	NM_021420	58231.0	Mm.234472	NM_021420	ENSMUSG00000018209	Stk4	AI447339|AU020804|Kas-2|Mst1|Ysk3	serine/threonine kinase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-17703596-2	chr16	17703496	17703696	+	661.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285886, intron 2 of 16)	intron (NM_001285886, intron 2 of 16)	19304.0	NM_001285886	94112.0	Mm.208970	NM_033609	ENSMUSG00000012114	Med15	A230074L19Rik|AW536074|Pcqap|mPcqap	mediator complex subunit 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-114659239-1	chr5	114659139	114659339	+	548.0	f1_c57bl6.idr	promoter-TSS (NM_022017)	promoter-TSS (NM_022017)	-818.0	NM_022017	63873.0	Mm.266450	NM_022017	ENSMUSG00000014158	Trpv4	0610033B08Rik|OTRPC4|Trp12|VR-OAC|VRL-2|VROAC	transient receptor potential cation channel, subfamily V, member 4	protein-coding	0.0459956639332704	-0.396887814837701	0.148561257098004	-0.245542126572327	-0.40764763476057	-0.396035667758816	-0.399829192670649	-0.403055046398238	-3.48890046272546	0.161071232427363	1
Merged-chr9-55544199-3	chr9	55544093	55544293	+	731.377747	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027397, exon 4 of 6)	exon (NM_027397, exon 4 of 6)	3044.0	NM_027397	104360.0	Mm.273996	NM_027397	ENSMUSG00000032318	Isl2	3110001N10Rik	insulin related protein 2 (islet 2)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-10919813-2	chr17	10919713	10919913	+	916.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001317726, intron 1 of 6)	intron (NM_001317726, intron 1 of 6)	79454.0	NM_016694	50873.0	Mm.311110	NM_016694	ENSMUSG00000023826	Park2	PRKN	Parkinson disease (autosomal recessive, juvenile) 2, parkin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-145241088-4	chr4	145240950	145241150	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011610, intron 1 of 9)	intron (NM_011610, intron 1 of 9)	5820.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-35836247-2	chr11	35836147	35836347	+	969.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1719.0	NM_025936	104458.0	Mm.284906	NM_025936	ENSMUSG00000018848	Rars	2610011N19Rik|2610037E21Rik|AL033339|AW985894	arginyl-tRNA synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-32471756-2	chr9	32471656	32471856	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008026, intron 2 of 8)	RSINE1|SINE|B4	69696.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-134097339-2	chr1	134097239	134097439	+	545.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13903.0	NM_001284525	71884.0	Mm.328268	NM_027979	ENSMUSG00000026450	Chit1	2300002L19Rik	chitinase 1 (chitotriosidase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-92977637-4	chr7	92977558	92977758	+	783.983337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-102221.0	NM_021427	58238.0	Mm.113787	NM_021427	ENSMUSG00000051515	Fam181b	A830059I20Rik|AB041569	family with sequence similarity 181, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96217157-2	chr3	96217057	96217257	+	791.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-2759.0	NM_178213	621893.0		NM_178213	ENSMUSG00000063689	Hist2h2ab	EG621893|H2a-613a	histone cluster 2, H2ab	protein-coding	0.692372867915058	0.206298112558591	0.19889931454268	0.193156077083187	0.883637408799166	0.207959145318245	1.0234813019682	0.194161669549589	1.78117481583511	0.390304072509255	1
Merged-chr19-41761809-1	chr19	41761709	41761909	+	1000.0	f1_c57bl6.idr	Intergenic	Intergenic	14848.0	NR_040320	100502871.0	Mm.394485	NR_040320		Gm19424	-	predicted gene, 19424	ncRNA	2.87721779445269	2.40524208619801	2.32833585059913	2.50982710306209	2.83166141180959	2.42211211930733	2.3456066299775	2.81051966156003	0.152057007451377	0.83847370512085	0.998431161219273
Merged-chr8-11392921-2	chr8	11392821	11393021	+	827.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_009932, intron 4 of 47)	intron (NM_009932, intron 4 of 47)	-80095.0	NM_009931	12826.0	Mm.738	NM_009931	ENSMUSG00000031502	Col4a1	Bru|Col4a-1|Raw|Svc	collagen, type IV, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-72979124-5	chr2	72978971	72979171	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045269)	promoter-TSS (NR_045269)	210.0	NM_001098425	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36745370-2	chr18	36745270	36745470	+	959.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010885)	promoter-TSS (NM_010885)	714.0	NM_011879	24010.0	Mm.30234	NM_011879	ENSMUSG00000024474	Ik	MuRED	IK cytokine	protein-coding	0.974813892621835	1.04959954247795	0.396482409111938	0.390067938860015	0.789384292319689	1.06140915285691	0.398309883634476	0.391191025522239	-0.259626326470725	0.886689305170587	1
Merged-chr16-18463323-2	chr16	18463223	18463423	+	620.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001353143, intron 11 of 16)	intron (NM_001353143, intron 11 of 16)	-35390.0	NM_001081682	13972.0	Mm.236139	NM_023120	ENSMUSG00000000884	Gnb1l	ESTM55|Gm16314|Me49f07|Wdr14|Wdvcf	guanine nucleotide binding protein (G protein), beta polypeptide 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-90896322-1	chr5	90896222	90896422	+	756.0	f0_balb.idr	Intergenic	Lx3C|LINE|L1	5077.0	NM_008176	14825.0	Mm.21013	NM_008176	ENSMUSG00000029380	Cxcl1	Fsp|Gro1|KC|Mgsa|N51|Scyb1|gro	chemokine (C-X-C motif) ligand 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-113098087-4	chr12	113097945	113098145	+	903.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_054081)	promoter-TSS (NM_054081)	-233.0	NM_001346696	116870.0	Mm.212577	NM_054081	ENSMUSG00000021144	Mta1	-	metastasis associated 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-136954531-4	chr5	136954368	136954568	+	951.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347504, intron 1 of 3)	intron (NM_001347504, intron 1 of 3)	1193.0	NM_001347504	66437.0	Mm.25849	NM_025562	ENSMUSG00000019054	Fis1	2010003O14Rik|Ttc11	fission, mitochondrial 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47394408-4	chr17	47394312	47394512	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008189)	TTS (NM_008189)	6194.0	NM_008189	14913.0	Mm.16224	NM_008189	ENSMUSG00000023982	Guca1a	GC-A|Gcap1|Guca1|mGCAP1	guanylate cyclase activator 1a (retina)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-44777932-4	chr16	44777753	44777953	+	843.125	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021325, intron 1 of 6)	B1_Mur2|SINE|Alu	12117.0	NM_021325	57781.0	Mm.416152	NM_021325	ENSMUSG00000022667	Cd200r1	CD200R|Mox2r|OX2R	CD200 receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-80642927-3	chr12	80642833	80643033	+	953.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347409, intron 1 of 4)	intron (NM_001347409, intron 1 of 4)	1178.0	NM_007951	13877.0	Mm.246551	NM_007951	ENSMUSG00000021131	Erh	Mer|Prei1	ERH mRNA splicing and mitosis factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-50055675-1	chr18	50055575	50055775	+	761.0	f1_c57bl6.idr	intron (NM_134131, intron 1 of 1)	intron (NM_134131, intron 1 of 1)	-2013.0	NR_155293	102635912.0	Mm.440627	NR_155293		C030005K06Rik	-	RIKEN cDNA C030005K06 gene	ncRNA	3.5346736561493	3.22680264274338	3.81502895214479	2.80292008645253	2.40934154197591	3.62045410443542	3.33656179747839	3.47372770649813	-0.191663755708341	0.754021203235611	0.998431161219273
Merged-chr7-81861299-4	chr7	81861211	81861411	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_111910, intron 1 of 7)	intron (NR_111910, intron 1 of 7)	-1376.0	NM_001291282	107769.0	Mm.221412	NM_145375	ENSMUSG00000038623	Tm6sf1	AI428514|BC023123|C630016D09Rik	transmembrane 6 superfamily member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-96546876-3	chr7	96546806	96547006	+	986.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310762, intron 4 of 32)	intron (NM_001310762, intron 4 of 32)	-204942.0	NR_046043	670727.0	Mm.421352	NR_046043	ENSMUSG00000085751	Gm15412	-	predicted gene 15412	ncRNA	3.31898257905639	3.56501596533632	2.35881716387561	3.60926786581835	5.40353732601095	5.28869067968663	5.16920318790609	4.12766973100917	2.32678451605138	9.15063291039132e-07	6.01036279154426e-05
Merged-chr4-43030885-2	chr4	43030785	43030985	+	904.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023231, intron 2 of 9)	intron (NM_023231, intron 2 of 9)	499.0	NM_023231	66592.0	Mm.331565	NM_023231	ENSMUSG00000028455	Stoml2	0610038F01Rik|MSLP2|SLP-2	stomatin (Epb7.2)-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-70414069-1	chr18	70413969	70414169	+	717.0	f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-58385.0	NM_029019	170461.0	Mm.83623	NM_029019	ENSMUSG00000079608	Stard6	1700011K09Rik|4833424I06Rik|4933429L05Rik|AI644424	StAR-related lipid transfer (START) domain containing 6	protein-coding	1.36135961354306	0.734840947182444	0.702943490682446	1.96911323850051	0.439741937116153	0.74191016384576	0.470601549270135	0.458119952849692	-4.11196674908947	0.0125752542020858	0.128007268028811
Merged-chr15-74594291-3	chr15	74594217	74594417	+	757.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42001.0	NM_001177437	69439.0	Mm.263708	NM_001177437	ENSMUSG00000022603	Mroh4	1700016M24Rik	maestro heat-like repeat family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-20231049-2	chr12	20230942	20231142	+	882.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MMERGLN-int|LTR|ERV1	584737.0	NR_015521	69513.0	Mm.273972	NR_015521	ENSMUSG00000099759	1700030C10Rik	-	RIKEN cDNA 1700030C10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-19145569-4	chr2	19145451	19145651	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53567.0	NM_001271563	70882.0	Mm.276696	NM_001081083	ENSMUSG00000037683	Armc3	4921513G22Rik	armadillo repeat containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31157607-2	chr14	31157507	31157707	+	603.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_138672, intron 19 of 68)	intron (NM_138672, intron 19 of 68)	11034.0	NM_138672	192187.0	Mm.220821	NM_138672	ENSMUSG00000042286	Stab1	FEEL-1|FELE-1|MFEEL-1|MS-1|STAB-1|mKIAA0246	stabilin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-149221614-4	chr5	149221519	149221719	+	972.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37059.0	NM_001359957	231915.0	Mm.29402	NM_001013378	ENSMUSG00000041264	Uspl1	E430026A01Rik	ubiquitin specific peptidase like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91862353-3	chr16	91862242	91862442	+	599.861084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110275, intron 25 of 28)	intron (NM_001110275, intron 25 of 28)	69288.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-84050631-2	chr6	84050531	84050731	+	768.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077694, intron 3 of 54)	intron (NM_001077694, intron 3 of 54)	31245.0	NM_021469	26903.0	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-22005367-2	chr9	22005267	22005467	+	797.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001293650, intron 5 of 17)	intron (NM_001293650, intron 5 of 17)	2379.0	NM_001293650	19089.0	Mm.214593	NM_008925	ENSMUSG00000003402	Prkcsh	80K-H|PKCSH	protein kinase C substrate 80K-H	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-145225746-2	chr4	145225646	145225846	+	541.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011610, intron 3 of 9)	intron (NM_011610, intron 3 of 9)	21124.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125312139-2	chr6	125312039	125312239	+	707.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010736, intron 5 of 9)	intron (NM_010736, intron 5 of 9)	1746.0	NM_010736	17000.0	Mm.3122	NM_010736	ENSMUSG00000030339	Ltbr	AI256028|LTbetaR|Ltar|TNF-R-III|TNFCR|TNFR-RP|TNFR2-RP|TNFRrp|Tnfbr|Tnfrsf3	lymphotoxin B receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-68899264-4	chr11	68899160	68899360	+	993.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2306.0	NM_009080	19941.0	Mm.3229	NM_009080	ENSMUSG00000060938	Rpl26	SIG-20	ribosomal protein L26	protein-coding	3.09997036797295	2.99971189701359	2.65395605527965	2.92086340278779	3.05089393167805	2.61759588802738	3.81522202214383	2.83190725807645	0.419544193915673	0.522297693533542	0.947836760490745
Merged-chr13-52641892-2	chr13	52641792	52641992	+	665.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001198977, exon 12 of 14)	exon (NM_001198977, exon 12 of 14)	45010.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-95425064-2	chr11	95424964	95425164	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359107, intron 1 of 9)	PB1D7|SINE|Alu	10981.0	NM_001359107	20747.0	Mm.285454	NM_025287	ENSMUSG00000057522	Spop	AI315626|Pcif1|TEF2	speckle-type POZ protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-42917405-2	chr4	42917305	42917505	+	686.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001346526, exon 1 of 9)	5' UTR (NM_001346526, exon 1 of 9)	162.0	NM_172690	230085.0	Mm.240965	NM_172690	ENSMUSG00000036062	Phf24	GINIP|N28178	PHD finger protein 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46014732-4	chr19	46014638	46014838	+	993.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11260.0	NM_176785	20170.0	Mm.101110	NM_176785	ENSMUSG00000074811	Hps6	5330434M19Rik|BLOC2|ru	HPS6, biogenesis of lysosomal organelles complex 2 subunit 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117874158-4	chr10	117874073	117874273	+	921.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-28199.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-88709688-2	chr9	88709587	88709787	+	963.0	f0_balb.idr|f0_c57.idr	intron (NM_001359992, intron 2 of 2)	intron (NM_001359992, intron 2 of 2)	9900.0	NM_001359992	100039707.0	Mm.347377	NM_001128601	ENSMUSG00000079427	Mthfsl	Gm2382	5, 10-methenyltetrahydrofolate synthetase-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117435126-4	chr10	117435035	117435235	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12300.0	NR_152734	102634600.0	Mm.399106	NR_152734	ENSMUSG00000112344	Gm32141	-	predicted gene, 32141	ncRNA	3.88505429932292	3.79338319613923	3.29529240816264	3.56581473599303	4.15018957117947	3.97553493745258	3.84888655258117	4.09958256742182	0.527873364633958	0.257245857854494	0.756355775822142
Merged-chr14-103055913-2	chr14	103055813	103056013	+	721.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008392, exon 5 of 5)	3' UTR (NM_008392, exon 5 of 5)	8901.0	NM_008392	16365.0	Mm.4662	NM_008392	ENSMUSG00000022126	Acod1	AI323667|CAD|Irg1	aconitate decarboxylase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-37869388-4	chr16	37869277	37869477	+	938.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177093, intron 1 of 3)	intron (NM_177093, intron 1 of 3)	977.0	NM_177093	320184.0	Mm.390882	NM_177093	ENSMUSG00000034158	Lrrc58	1810012N18Rik|C330018J07Rik	leucine rich repeat containing 58	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102440318-3	chr12	102440222	102440422	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011175)	promoter-TSS (NM_011175)	-509.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-27364645-1	chr7	27364545	27364745	+	602.0	f1_balb.idr	exon (NM_032610, exon 31 of 36)	exon (NM_032610, exon 31 of 36)	-8637.0	NM_138676	192192.0	Mm.21297	NM_138676	ENSMUSG00000089832	Shkbp1	B930062H15Rik|Sb1	Sh3kbp1 binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-153754165-5	chr1	153754160	153754360	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011882, exon 4 of 9)	exon (NM_011882, exon 4 of 9)	4834.0	NM_011882	24014.0	Mm.259254	NM_011882	ENSMUSG00000066800	Rnasel	E230029I04Rik	ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-60210519-4	chr11	60210422	60210622	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358314)	promoter-TSS (NM_001358314)	-51.0	NM_001358314	20787.0	Mm.278701	NM_011480	ENSMUSG00000020538	Srebf1	ADD1|SREBP1|bHLHd1	sterol regulatory element binding transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-157424167-4	chr2	157424059	157424259	+	899.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009271)	promoter-TSS (NM_009271)	-134.0	NM_009271	20779.0	Mm.22845	NM_009271	ENSMUSG00000027646	Src	AW259666|pp60c-src	Rous sarcoma oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-4410089-4	chr7	4410001	4410201	+	960.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR15|LTR|ERVK	-12357.0	NM_001163014	243816.0	Mm.248662	NM_001163014	ENSMUSG00000078810	Gp6	9830166G18Rik|Gm469|Gpvi	glycoprotein 6 (platelet)	protein-coding	1.69198823816183	2.05027198280457	2.13130401169164	2.80832246392965	2.55350809673983	2.354719082144	2.14744103316261	1.94198609179136	0.0579983694631667	0.94750212164898	0.998431161219273
Merged-chr4-129522839-1	chr4	129522739	129522939	+	576.0	f1_c57bl6.idr	intron (NM_008228, intron 5 of 13)	intron (NM_008228, intron 5 of 13)	9258.0	NM_010807	17357.0	Mm.424974	NM_010807	ENSMUSG00000047945	Marcksl1	AL022768|AW215397|AW536807|D4Bc1|F52|MacMARCKS|Macs2|Macs3|Mlp|Mrp	MARCKS-like 1	protein-coding	-1.8418762459921	-1.8125357239735	-1.82140854000656	-1.82869693527674	-1.56059678980999	-1.8106129477253	-1.81939992894326	-1.82739231600805	1.3620893379502	0.699511506488145	1
Merged-chr15-28365379-4	chr15	28365290	28365490	+	884.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133365, intron 47 of 78)	intron (NM_133365, intron 47 of 78)	161624.0	NM_133365	110082.0	Mm.248464	NM_133365	ENSMUSG00000022262	Dnah5	AU022615|Dnahc5|Mdnah5|b2b1134Clo|b2b1154Clo|b2b1537Clo|b2b1565Clo|b2b3491Clo|b2b601Clo|mKIAA1603	dynein, axonemal, heavy chain 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-105485379-4	chr4	105485277	105485477	+	910.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4|LINE|L1	328030.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	3.69931629224435	3.81880662369669	2.61212403517438	3.53281754875769	3.56888107425248	2.8830388210575	2.91790880416059	3.32642293554268	-0.445361052713234	0.456426472160725	0.919264728457769
Merged-chr2-18936268-2	chr2	18936168	18936368	+	610.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008845, intron 1 of 9)	intron (NM_008845, intron 1 of 9)	61853.0	NM_008845	18718.0	Mm.313977	NM_008845	ENSMUSG00000026737	Pip4k2a	AW742916|Pip5k2a	phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-180042514-4	chr2	180042408	180042608	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011969)	promoter-TSS (NM_011969)	25.0	NM_178750	269397.0	Mm.63068	NM_178750	ENSMUSG00000039086	Ss18l1	A230053O16Rik|CREST	SS18, nBAF chromatin remodeling complex subunit like 1	protein-coding	6.18435257539552	6.51875957569562	5.67402304860887	5.90528485510447	6.55122687928096	5.87628466635021	6.25213632489038	6.29985203606742	0.183927424812608	0.455631823619347	0.919264728457769
Merged-chr13-55125098-4	chr13	55125008	55125208	+	990.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012017, intron 5 of 6)	intron (NM_012017, intron 5 of 6)	19799.0	NM_012017	26919.0	Mm.22795	NM_012017	ENSMUSG00000021481	Zfp346	Jaz|Znf346	zinc finger protein 346	protein-coding	3.7233016800438	3.96004729583337	3.52871282203852	4.12389418320388	3.10015636656886	2.9962990110563	3.46673110062349	4.28026121370234	-0.405579092859681	0.451912479991874	0.91820577601875
Merged-chr13-29984417-4	chr13	29984301	29984501	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289920)	promoter-TSS (NM_001289920)	-10.0	NM_001359994	13557.0	Mm.268356	NM_010093	ENSMUSG00000016477	E2f3	E2F3b|E2f3a	E2F transcription factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133202348-4	chr4	133202148	133202348	+	832.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6593.0	NR_105984	102466215.0		NR_105984	ENSMUSG00000099202	Mir7017	Gm27945|mmu-mir-7017	microRNA 7017	ncRNA	3.33814687478082	2.37161157531508	1.70832722564311	3.10849566151634	2.67036165923526	1.48861894797034	3.14993669741457	2.37325022500169	-0.439860441349613	0.615458278845498	0.977352076822579
Merged-chr8-120533168-2	chr8	120533068	120533268	+	724.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198671, intron 1 of 15)	intron (NM_198671, intron 1 of 15)	-2689.0	NM_001145897	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-84172454-4	chr12	84172345	84172545	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163501, intron 2 of 12)	intron (NM_001163501, intron 2 of 12)	21570.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120629579-4	chr11	120629477	120629677	+	999.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010756, exon 3 of 3)	exon (NM_010756, exon 3 of 3)	3970.0	NM_010756	17134.0	Mm.268010	NM_010756	ENSMUSG00000051510	Mafg	AA545192|C630022N07Rik	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein G (avian)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-125764586-4	chr10	125764484	125764684	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR41B|LTR|ERVL	-201635.0	NM_177152	320398.0	Mm.275586	NM_177152	ENSMUSG00000020105	Lrig3	9030421L11Rik|9130004I02Rik|9430095K15Rik|mKIAA3016	leucine-rich repeats and immunoglobulin-like domains 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-100391850-4	chr9	100391731	100391931	+	889.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	94642.0	NM_001033543	213208.0	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	0.875382799799444	1.74419378012373	2.02187163500516	2.13117375658957	1.26568923552357	0.949183753478068	2.13472367368257	0.908372015218195	-1.00615997432969	0.444937885786014	0.912437002106983
Merged-chr8-123374335-4	chr8	123374230	123374430	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359076, intron 1 of 16)	CpG	619.0	NM_001286363	66855.0	Mm.178818	NM_025804	ENSMUSG00000001472	Tcf25	1100001J13Rik|1810041K11Rik|D8Ertd325e|Nulp1|mKIAA1049	transcription factor 25 (basic helix-loop-helix)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-96562781-4	chr15	96562671	96562871	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	79191.0	NM_134086	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-30711800-4	chr5	30711697	30711897	+	845.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001356949, exon 1 of 3)	5' UTR (NM_001356949, exon 1 of 3)	233.0	NM_023047	65254.0	Mm.27732	NM_023047	ENSMUSG00000029168	Dpysl5	CRAM|CRMP-5|Crmp5	dihydropyrimidinase-like 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-3341533-8	chr5	3341305	3341505	+	941.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2488.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-69500766-4	chr12	69500669	69500869	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F2|LTR|ERVL-MaLR	-25219.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-46406990-3	chr18	46406955	46407155	+	678.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58761.0	NR_045438	72076.0	Mm.82766	NM_028086		Mospd4	2010013H21Rik	motile sperm domain containing 4	pseudo	1.06842787293442	1.18850626825958	1.65936254067969	1.1205610804911	2.00635148940217	1.40923560062317	0.913326590168157	2.46470169124778	1.74015852876195	0.152738192645331	0.606698648589328
Merged-chr11-75648306-2	chr11	75648158	75648358	+	934.666626	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008916, exon 12 of 12)	3' UTR (NM_008916, exon 12 of 12)	-3251.0	NM_008659	17913.0	Mm.234502	NM_008659	ENSMUSG00000017774	Myo1c	C80397|MMIb|MYO1E|NMI|mm1beta|myr2	myosin IC	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81434132-4	chr10	81434007	81434207	+	895.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-6934.0	NM_026756	18029.0	Mm.426936	NM_008688	ENSMUSG00000055053	Nfic	1110019L22Rik|1500041O16Rik|AA589446|AI746521|NF1-C	nuclear factor I/C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-163418350-2	chr2	163418250	163418450	+	644.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025699, intron 1 of 3)	intron (NM_025699, intron 1 of 3)	1120.0	NM_025699	66680.0	Mm.25119	NM_025699	ENSMUSG00000035399	Oser1	3230401D17Rik|AI256769|Perit1	oxidative stress responsive serine rich 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-16621026-4	chr10	16620922	16621122	+	985.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	474760.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47194844-4	chr17	47194769	47194969	+	921.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001097623, intron 3 of 19)	CT-rich|Low_complexity|Low_complexity	-35361.0	NM_172622	224829.0	Mm.260989	NM_172622		Trerf1	9430096I18Rik|AI429294|B830015H24|RAPA|Trep-132|Trep132	transcriptional regulating factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-132846632-4	chr2	132846539	132846739	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024385)	promoter-TSS (NM_001024385)	-27.0	NM_001024385	66586.0	Mm.357342	NM_025646	ENSMUSG00000027357	Crls1	0610009I22Rik|4930557M15Rik|5730490M08Rik	cardiolipin synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-8823251-4	chr16	8823074	8823274	+	856.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6926.0	NM_001081400	69053.0	Mm.390868	NM_001081400	ENSMUSG00000022507	1810013L24Rik	1110017P05Rik|3010002C02Rik|AA792997|AW124177|Gm19906|R74903	RIKEN cDNA 1810013L24 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-59751050-7	chr9	59750930	59751130	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001172071)	promoter-TSS (NM_001172071)	-144.0	NM_173018	270163.0	Mm.249545	NM_173018	ENSMUSG00000039585	Myo9a	4732465J09Rik|C130068I12Rik|C230003M11	myosin IXa	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-104741731-2	chr2	104741631	104741831	+	735.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144804, intron 1 of 8)	intron (NM_144804, intron 1 of 8)	1070.0	NM_144804	211896.0	Mm.288805	NM_144804	ENSMUSG00000027173	Depdc7	AV216087	DEP domain containing 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-54692713-4	chr3	54692610	54692810	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019995)	promoter-TSS (NM_019995)	-105.0	NR_152185	56790.0	Mm.486375	NM_019995	ENSMUSG00000027751	Supt20	AA667204|AI450544|D3Ertd300e|Fam48a|Supt20h|p38IP	suppressor of Ty 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-113983937-3	chr13	113983823	113984023	+	788.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172595, intron 4 of 4)	intron (NM_172595, intron 4 of 4)	167669.0	NR_045836	319803.0	Mm.386896	NM_177004	ENSMUSG00000114213	A430090L17Rik	-	RIKEN cDNA A430090L17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-10875733-2	chr16	10875633	10875833	+	711.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39064.0	NR_131135	545180.0	Mm.373756	NR_131135	ENSMUSG00000095369	Gm21859	-	predicted gene, 21859	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-58011971-2	chr11	58011871	58012071	+	660.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028451, intron 1 of 18)	intron (NM_028451, intron 1 of 18)	2907.0	NM_028451	73158.0	Mm.248843	NM_028451	ENSMUSG00000037331	Larp1	1810024J12Rik|3110040D16Rik|Larp|mKIAA0731	La ribonucleoprotein domain family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-116306626-2	chr7	116306526	116306726	+	866.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001305185, intron 3 of 26)	intron (NM_001305185, intron 3 of 26)	1750.0	NM_001305185	233765.0	Mm.3741	NM_172743	ENSMUSG00000045659	Plekha7	A430081P20Rik|AI414265	pleckstrin homology domain containing, family A member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-128400824-4	chr7	128400732	128400932	+	774.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026418, intron 3 of 4)	intron (NM_026418, intron 3 of 4)	17340.0	NM_026418	67865.0	Mm.18635	NM_026418	ENSMUSG00000030844	Rgs10	2310010N19Rik	regulator of G-protein signalling 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-55203485-3	chr18	55203393	55203593	+	669.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-210902.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-62664106-6	chr4	62664042	62664242	+	892.361084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134257, intron 10 of 15)	intron (NM_134257, intron 10 of 15)	-9832.0	NM_001310706	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-65726002-3	chr16	65725839	65726039	+	647.388855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-89694.0	NM_028572	73569.0	Mm.25670	NM_028572	ENSMUSG00000091243	Vgll3	1700110N18Rik|4832416J22|C80713|Vgl-3|Vito-2	vestigial like family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-106168844-4	chr8	106168789	106168989	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357382)	promoter-TSS (NM_001357382)	-32.0	NM_001357381	330836.0	Mm.46749	NM_178798	ENSMUSG00000031904	Slc7a6	AI643885|LAT-2|LAT3|y+LAT-2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124500185-2	chr5	124500118	124500318	+	896.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_021430, intron 6 of 6)	intron (NM_021430, intron 6 of 6)	17063.0	NM_029532	76167.0	Mm.156035	NM_029532	ENSMUSG00000029402	Snrnp35	6330548G22Rik	small nuclear ribonucleoprotein 35 (U11/U12)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25280842-2	chr7	25280742	25280942	+	962.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001302811, intron 2 of 20)	intron (NM_001302811, intron 2 of 20)	-1337.0	NM_027882	71722.0	Mm.28833	NM_027882	ENSMUSG00000005442	Cic	1200010B10Rik|mKIAA0306	capicua transcriptional repressor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-74704569-4	chr5	74704455	74704655	+	972.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1652.0	NM_001159577	16924.0	Mm.440403	NM_010727	ENSMUSG00000029228	Lnx1	Lnx	ligand of numb-protein X 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-75126272-2	chr1	75126172	75126372	+	719.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_194333, intron 11 of 11)	intron (NM_194333, intron 11 of 11)	7618.0	NM_194333	22626.0	Mm.68157	NM_194333	ENSMUSG00000026205	Slc23a3	SVCT3|Yspl1	solute carrier family 23 (nucleobase transporters), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165886581-2	chr2	165886506	165886706	+	804.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1768.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	-0.999999674489517	-0.636700585974243	-0.994203952634121	-0.996552678530406	-0.999487640908427	-0.979893116615069	-0.991541300803265	-0.566406214772358	0.4201000681076	0.89548518237229	1
Merged-chr1-59899821-3	chr1	59899716	59899916	+	872.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13190.0	NM_001037725	72750.0	Mm.258250	NM_001037725	ENSMUSG00000041040	Fam117b	2810425F24Rik|6330416D14Rik|Als2cr13	family with sequence similarity 117, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-69075700-4	chr17	69075593	69075793	+	924.8916630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355732)	promoter-TSS (NM_001355732)	16.0	NM_001355732	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-3802979-6	chr5	3802910	3803110	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033173)	promoter-TSS (NR_033173)	114.0	NM_001289528	70797.0	Mm.130148	NM_001003909	ENSMUSG00000040351	Ankib1	2310061P20Rik|4631416I11Rik|AW494740|C80642|mKIAA1386	ankyrin repeat and IBR domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-46358854-1	chr18	46358754	46358954	+	542.0	f1_c57bl6.idr	Intergenic	MT2C_Mm|LTR|ERVL	-46926.0	NM_001160399	240261.0	Mm.329416	NM_001160399	ENSMUSG00000071855	Ccdc112	8430438M01Rik|AW108467	coiled-coil domain containing 112	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-55958431-4	chr17	55958295	55958495	+	782.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028381)	promoter-TSS (NM_028381)	-792.0	NM_028381	72886.0	Mm.22796	NM_028381	ENSMUSG00000003208	Ccdc94	2900016D05Rik|AI413813	coiled-coil domain containing 94	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-57481576-2	chr17	57481476	57481676	+	872.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355722, intron 21 of 22)	MTE2b|LTR|ERVL-MaLR	63738.0	NM_001104591	224916.0	Mm.469889	NM_001104591	ENSMUSG00000090655	Vmn2r120	EG224916	vomeronasal 2, receptor 120	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34142652-3	chr17	34142547	34142747	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2769.0	NM_010388	15000.0	Mm.195060	NM_010388	ENSMUSG00000037548	H2-DMb2	H-2Mb2|H2-Mb2	histocompatibility 2, class II, locus Mb2	protein-coding	5.15986249618733	5.40043862201018	5.21681514328745	4.92958511786025	3.46296916996432	4.01045769173479	4.42841058339286	4.59851724007726	-1.22844731749462	0.00105280066643587	0.0202211884672854
Merged-chr13-43791562-6	chr13	43791545	43791745	+	884.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009856, intron 2 of 4)	intron (NM_009856, intron 2 of 4)	6533.0	NM_001289915	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-11550961-2	chr2	11550861	11551061	+	571.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177758, intron 1 of 14)	intron (NM_001177758, intron 1 of 14)	2968.0	NM_001177758	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-120159081-4	chr2	120158988	120159188	+	965.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4513.0	NM_133838	98878.0	Mm.132226	NM_133838	ENSMUSG00000027293	Ehd4	2210022F10Rik|AI197390|AI846352|AV006278|Past2	EH-domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-50697300-3	chr15	50697235	50697435	+	957.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310481, intron 4 of 5)	intron (NM_001310481, intron 4 of 5)	191714.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	2.40679005049364	3.69907011270091	4.51319152303276	3.7599353509284	3.71924974040827	3.08576319417942	4.4641217069021	2.57758317687614	-0.186948458559757	0.773017434686012	0.998431161219273
Merged-chr3-138521456-4	chr3	138521355	138521555	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4736.0	NM_007917	13684.0	Mm.3941	NM_007917	ENSMUSG00000028156	Eif4e	EG668879|Eif4e-ps|If4e|eIF-4E	eukaryotic translation initiation factor 4E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-72317258-4	chr8	72317157	72317357	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1805.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	5.74085206485245	6.02666719145107	5.21502864088619	5.7515879464699	5.58922921238492	4.20951855554873	5.74115377963614	5.35881990632713	-0.416260045485977	0.207104259009507	0.695175503875795
Merged-chr7-98793262-1	chr7	98793162	98793362	+	975.0	f0_balb.idr	Intergenic	Intergenic	-41850.0	NM_001285794	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	0.838124283470867	0.703807232779445	0.690643976298922	1.60620251624112	1.12475666786318	0.938207906396956	1.08540277646699	1.77650543254985	0.95449020754706	0.505794567395138	0.941634925976032
Merged-chr7-126475315-8	chr7	126475213	126475413	+	995.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289541)	promoter-TSS (NM_001289541)	-183.0	NM_011363	20399.0	Mm.8538	NM_011363	ENSMUSG00000030733	Sh2b1	AI425885|C530001K22Rik|Irip|Psm|SH2-B|SH2-Bb|Sh2bpsm1|mKIAA1299	SH2B adaptor protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-128173458-2	chr7	128173358	128173558	+	747.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001029872)	promoter-TSS (NM_001029872)	-488.0	NM_001029872	381924.0	Mm.334257	NM_001029872	ENSMUSG00000070369	Itgad	Cd11d	integrin, alpha D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-77622341-4	chr10	77622275	77622475	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019803)	promoter-TSS (NM_019803)	54.0	NM_019803	22213.0	Mm.458125	NM_019803	ENSMUSG00000009293	Ube2g2	1110003O05Rik|D10Xrf369|UBC7|Ubc7p	ubiquitin-conjugating enzyme E2G 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72374987-4	chr6	72374867	72375067	+	888.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016872, intron 1 of 2)	intron (NM_016872, intron 1 of 2)	5501.0	NM_001080742	53620.0	Mm.440321	NM_016872	ENSMUSG00000073002	Vamp5	AF119384|Camp	vesicle-associated membrane protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-116108168-4	chr6	116108051	116108251	+	814.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177412, intron 3 of 5)	intron (NM_177412, intron 3 of 5)	85223.0	NM_177412	330401.0	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-20651264-4	chr18	20651192	20651392	+	841.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155534, intron 1 of 2)	MTD|LTR|ERVL-MaLR	-13958.0	NM_013697	22139.0	Mm.2108	NM_013697	ENSMUSG00000061808	Ttr	AA408768|AI787086|D17860|prealbumin	transthyretin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126974704-2	chr8	126974604	126974804	+	786.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-3625.0	NM_172762	52202.0	Mm.28199	NM_172762	ENSMUSG00000033931	Rbm34	4930547K05Rik|6330444B11|D8Ertd233e	RNA binding motif protein 34	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-80814946-2	chr15	80814846	80815046	+	771.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177124, intron 1 of 21)	intron (NM_177124, intron 1 of 21)	16336.0	NM_177124	213988.0	Mm.131328	NM_144812	ENSMUSG00000047888	Tnrc6b	2700090M07Rik|A730065C02Rik|AI848765|D230019K20Rik	trinucleotide repeat containing 6b	protein-coding	-0.0513044461956857	-0.237092415715263	-0.58135812712399	-0.583885929164579	-0.447999328801876	-0.577325978049657	-0.580633953459129	-0.583444937947025	-2.374671307137	0.372965199471042	1
Merged-chr14-9487668-4	chr14	9487567	9487767	+	914.43335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-396428.0	NR_030680	100042415.0	Mm.235938	NR_030680	ENSMUSG00000089686	Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	1.41697886192738	0.720889891803951	0.708531731771364	0.69886533303199	1.00281849440769	1.42272830392733	1.23758003583793	1.60943828347773	1.70652346193186	0.251600653557224	0.749698831323701
Merged-chr12-85985763-4	chr12	85985653	85985853	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347395, intron 29 of 32)	intron (NM_001347395, intron 29 of 32)	93288.0	NM_009368	21809.0	Mm.3992	NM_009368	ENSMUSG00000021253	Tgfb3	TGF-beta-3|Tgfb-3	transforming growth factor, beta 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-185208500-4	chr1	185208419	185208619	+	858.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163754, intron 1 of 34)	intron (NM_001163754, intron 1 of 34)	4351.0	NM_001163754	98732.0	Mm.275841	NM_172649	ENSMUSG00000039318	Rab3gap2	1110059F07Rik|2010002H18Rik|5830469C09|AI851069|AW743433|RAB3-GAP150|mKIAA0839	RAB3 GTPase activating protein subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-11807603-3	chr18	11807494	11807694	+	705.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31680.0	NM_001146287	63955.0	Mm.40717	NM_022021	ENSMUSG00000040957	Cables1	Cables|ik3-1	CDK5 and Abl enzyme substrate 1	protein-coding	-2.18138529563533	-2.15523716995652	-2.1631445789866	-2.16963996020037	-2.05513010215571	-2.15352360143315	-2.16135451490766	-2.16847729006863	0.759018020146679	0.829933115115583	1
Merged-chr3-116649088-4	chr3	116648980	116649180	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008246, intron 2 of 11)	intron (NM_008246, intron 2 of 11)	13597.0	NM_008246	15247.0	Mm.280077	NM_008246	ENSMUSG00000089911	Mfsd14a	Hiat1	major facilitator superfamily domain containing 14A	protein-coding	3.96359722690523	2.86587992094628	3.68759877922681	4.8088872959118	3.33475814847953	4.55194986948671	3.43711067633013	4.69750422348763	0.170055140858088	0.763207881544449	0.998431161219273
Merged-chr9-119065167-1	chr9	119065067	119065267	+	610.0	f1_balb.idr	intron (NM_011700, intron 11 of 18)	intron (NM_011700, intron 11 of 18)	12389.0	NM_001164567	22351.0	Mm.83817	NM_011700	ENSMUSG00000038775	Vill	Villp	villin-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-164944216-2	chr2	164944050	164944250	+	642.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4069.0	NM_013599	17395.0	Mm.4406	NM_013599	ENSMUSG00000017737	Mmp9	AW743869|B/MMP9|Clg4b|Gel B|MMP-9|pro-MMP-9	matrix metallopeptidase 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118535065-3	chr11	118535025	118535225	+	845.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285436, intron 3 of 13)	intron (NM_001285436, intron 3 of 13)	58293.0	NM_001359368	217364.0	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-39258511-4	chr10	39258425	39258625	+	960.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	-94731.0	NM_001127376	327743.0	Mm.208111	NM_001127376	ENSMUSG00000062074	Wisp3	CCN6|Gm735|WISP-3	WNT1 inducible signaling pathway protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-154677919-4	chr1	154677824	154678024	+	811.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009782, intron 3 of 46)	intron (NM_009782, intron 3 of 46)	47996.0	NM_009782	12290.0	Mm.267517	NM_009782	ENSMUSG00000004110	Cacna1e	A430040I15|BII|Cach6|Cacnl1a6|Cav2.3|Cchra1|alpha1E	calcium channel, voltage-dependent, R type, alpha 1E subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67490031-4	chr10	67489921	67490121	+	995.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47848.0	NM_010118	13654.0	Mm.290421	NM_010118	ENSMUSG00000037868	Egr2	Egr-2|Krox-20|Krox20|NGF1-B|Zfp-25|Zfp-6	early growth response 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-121375094-1	chr5	121374994	121375194	+	718.0	f1_c57bl6.idr	exon (NM_001163470, exon 8 of 12)	exon (NM_001163470, exon 8 of 12)	10315.0	NM_001359947	231712.0	Mm.20488	NM_172275	ENSMUSG00000042726	Trafd1	1110008K06Rik|Fln29	TRAF type zinc finger domain containing 1	protein-coding	-0.452434544783431	-0.255418848292406	-0.445028616517883	0.158426481844683	-0.312023233260408	-0.250991786989907	-0.444229192865406	-0.447332701416356	-1.59445555050023	0.515130441698278	1
Merged-chr4-150025332-2	chr4	150025232	150025432	+	944.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	-16309.0	NM_173371	100198.0	Mm.22183	NM_173371	ENSMUSG00000028980	H6pd	AI785303|G6pd1|Gpd-1|Gpd1	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-76647758-4	chr11	76647647	76647847	+	802.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24723.0	NM_177182	320522.0	Mm.131585	NM_177182	ENSMUSG00000044243	Bhlha9	A830053O21Rik|Fingerin	basic helix-loop-helix family, member a9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-80177358-2	chr18	80177258	80177458	+	944.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8881.0	NR_131039	105246506.0	Mm.392326	NR_131039		LOC105246506	-	uncharacterized LOC105246506	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-50885731-2	chr15	50885631	50885831	+	603.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_032000, intron 1 of 5)	intron (NM_032000, intron 1 of 5)	3318.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99089833-2	chr15	99089733	99089933	+	611.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2105.0	NM_001024702	239659.0	Mm.309917	NM_001024702	ENSMUSG00000001076	C1ql4	C1qtnf11|CTRP11	complement component 1, q subcomponent-like 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-38654297-2	chr10	38654197	38654397	+	758.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1VL4|LINE|L1	167482.0	NM_001177783	215919.0	Mm.294313	NM_001177783	ENSMUSG00000094311	Rfpl4b	100040915|Gm3037|Gm62	ret finger protein-like 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-136137780-4	chr1	136137705	136137905	+	862.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039472, intron 1 of 34)	intron (NM_001039472, intron 1 of 34)	6415.0	NR_153829	16565.0	Mm.276135	NM_019962	ENSMUSG00000041642	Kif21b	2610511N21Rik|mKIAA0449	kinesin family member 21B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-93976643-6	chr2	93976491	93976691	+	893.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-3443.0	NR_045827	70852.0	Mm.437014	NR_045827	ENSMUSG00000027196	Alkbh3os1	4921507L20Rik	alkB homolog 3, opposite strand 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-97795951-2	chr15	97795851	97796051	+	907.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001204280, intron 19 of 21)	intron (NM_001204280, intron 19 of 21)	11586.0	NM_026353	67739.0	Mm.28955	NM_026353	ENSMUSG00000081534	Slc48a1	4930570C03Rik	solute carrier family 48 (heme transporter), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-125829067-3	chr8	125828981	125829181	+	978.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175561, intron 17 of 33)	MTD|LTR|ERVL-MaLR	-68833.0	NR_155422	102632990.0	Mm.429446	NR_155422		A730098A19Rik	-	RIKEN cDNA A730098A19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-63594041-4	chr4	63593919	63594119	+	874.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6745.0	NM_001354647	670833.0	Mm.32213	NM_001354647	ENSMUSG00000084782	Gm11213	-	predicted gene 11213	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-16293434-3	chr5	16293320	16293520	+	826.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110843, intron 10 of 38)	intron (NM_001110843, intron 10 of 38)	-260075.0	NM_001289460	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-78388338-3	chr10	78388243	78388443	+	948.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20202.0	NR_105872	102465547.0		NR_105872	ENSMUSG00000098376	Mir6907	Gm27351|mmu-mir-6907	microRNA 6907	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-111248044-3	chr8	111247927	111248127	+	865.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009149, intron 1 of 25)	intron (NM_009149, intron 1 of 25)	11175.0	NM_009149	20340.0	Mm.276271	NM_009149	ENSMUSG00000003316	Glg1	AI593353|AW537898|CFR|CFR-1|ESL-1|MG-160|MG160|Selel	golgi apparatus protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-46013240-4	chr9	46013186	46013386	+	968.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357241)	promoter-TSS (NM_001357241)	466.0	NM_027498	70661.0	Mm.219459	NM_027498	ENSMUSG00000034135	Sik3	5730525O22Rik|9030204A07Rik|AI447252|AI846254|AI849445|Qsk|SIK-3|mKIAA0999	SIK family kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45916690-2	chr7	45916590	45916790	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_144801, exon 8 of 8)	3' UTR (NM_144801, exon 8 of 8)	4159.0	NM_001146346	13732.0	Mm.20829	NM_010129	ENSMUSG00000040212	Emp3	H-4|H4|HNMP-1|MI-35|Ymp	epithelial membrane protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-109278219-3	chr2	109278126	109278326	+	923.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029790)	promoter-TSS (NM_029790)	64.0	NM_029790	76894.0	Mm.330451	NM_029790	ENSMUSG00000057234	Mettl15	0610027B03Rik|AI303697|AW049952|Mett5d1	methyltransferase like 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70885833-2	chr8	70885740	70885940	+	588.5	f0_c57.idr|f1_balb.idr	intron (NM_053248, intron 13 of 14)	intron (NM_053248, intron 13 of 14)	6917.0	NM_053248	114479.0	Mm.172923	NM_053248	ENSMUSG00000000792	Slc5a5	NIS	solute carrier family 5 (sodium iodide symporter), member 5	protein-coding	2.0715263819913	3.42502925275997	3.05180073851968	1.5026343086568	2.91871152956127	3.52695452719702	2.8648896445423	3.62184370173994	0.943074852615001	0.217826394366576	0.708842567601735
Merged-chr13-9418805-4	chr13	9418698	9418898	+	928.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081426, intron 1 of 36)	intron (NM_001081426, intron 1 of 36)	142273.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-43827477-3	chr10	43827366	43827566	+	766.755554	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131055, intron 1 of 2)	ORR1E|LTR|ERVL-MaLR	1559.0	NR_131055	71018.0	Mm.410796	NR_131055	ENSMUSG00000111342	4933404K13Rik	-	RIKEN cDNA 4933404K13 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-30974058-4	chr13	30973963	30974163	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025588)	promoter-TSS (NM_025588)	-16.0	NM_025588	66482.0	Mm.293510	NM_025588	ENSMUSG00000021357	Exoc2	2410030I24Rik|AI648199|Sec5|Sec5l1	exocyst complex component 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-5716098-2	chr2	5715998	5716198	+	602.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1336.0	NM_177343	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-95824428-4	chr15	95824337	95824537	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_155276)	TTS (NR_155276)	5635.0	NR_155277	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31781690-4	chr14	31781518	31781718	+	649.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024604, intron 1 of 27)	intron (NM_001024604, intron 1 of 27)	48797.0	NM_001024604	105522.0	Mm.37660	NM_001024604	ENSMUSG00000014496	Ankrd28	AI465466|AI604979|E430019N21Rik|mKIAA0379	ankyrin repeat domain 28	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150202898-4	chr4	150202796	150202996	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1761.0	NM_009802	12353.0	Mm.232523	NM_009802	ENSMUSG00000028972	Car6	Ca6|DOC1	carbonic anhydrase 6	protein-coding	4.76643311287583	5.48978842295425	5.18407091538747	4.99281513714661	4.6979953428535	4.6612531857045	4.1391588627432	4.58212211969475	-0.711680391755587	0.039711749502813	0.283608077699256
Merged-chr9-47712696-9	chr9	47712653	47712853	+	962.892395	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	105455.0	NR_046048	100038460.0	Mm.447649	NR_046048		Gm10677	-	predicted gene 10677	ncRNA	1.90205945259233	1.80386736078675	2.05020739421263	2.40516846865242	2.12827616180545	1.8153587478521	2.06532398899209	2.4172759621595	0.16757882403627	0.852550187681399	0.998431161219273
Merged-chr6-131245224-4	chr6	131245124	131245324	+	998.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001170851, exon 2 of 9)	exon (NM_001170851, exon 2 of 9)	2138.0	NM_001170851	16633.0	Mm.4783	NM_008462	ENSMUSG00000030187	Klra2	Klra30|Ly49b	killer cell lectin-like receptor, subfamily A, member 2	protein-coding	2.87940235413148	1.48971605758254	2.77974289896307	1.40888668122486	3.09653544499689	2.79200951546439	2.8019400538426	2.97486326449922	1.13647635321868	0.191159263163872	0.669546561020494
Merged-chr18-77784595-1	chr18	77784495	77784695	+	606.0	f0_balb.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-9955.0	NM_013831	19201.0	Mm.57174	NM_013831	ENSMUSG00000025429	Pstpip2	MAYP|cmo	proline-serine-threonine phosphatase-interacting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-148808035-2	chr3	148807935	148808135	+	633.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	146600.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-4797495-4	chr6	4797407	4797607	+	813.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50201.0	NM_130877	170676.0	Mm.320575	NM_130877	ENSMUSG00000092035	Peg10	AA407948|Edr|HB-1|MEF3L|Mar2|Mart2|MyEF-3|Rtl2	paternally expressed 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-89253597-4	chr9	89253497	89253697	+	996.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	42213.0	NM_001359993	107885.0	Mm.486274	NM_026829	ENSMUSG00000066442	Mthfs	1110034I12Rik|2310020H23Rik|AI119695	5, 10-methenyltetrahydrofolate synthetase	protein-coding	3.76601293519072	3.02458455438633	3.14885061429993	3.48399703153019	3.19062979292745	3.28140816029966	3.36580460833048	3.57063475406524	-0.0653315184370121	0.906960680282239	0.998431161219273
Merged-chr19-37174247-3	chr19	37174139	37174339	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001290828, exon 2 of 11)	exon (NM_001290828, exon 2 of 11)	396.0	NR_045329	319931.0	Mm.446730	NR_045329	ENSMUSG00000097591	A330032B11Rik	-	RIKEN cDNA A330032B11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126200481-4	chr7	126200399	126200599	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311143)	promoter-TSS (NM_001311143)	2.0	NM_001311143	74204.0	Mm.235663	NM_028816	ENSMUSG00000000131	Xpo6	2610005L19Rik|AL022631|C230091E20Rik|R75304|Ranbp20|exp6|mKIAA0370	exportin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10696018-2	chr19	10695918	10696118	+	628.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361958, intron 1 of 4)	L1MEc|LINE|L1	-4750.0	NM_001361964	107305.0	Mm.19091	NM_181403	ENSMUSG00000048832	Vps37c	5730409F24Rik|AU042646	vacuolar protein sorting 37C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101288691-2	chr7	101288591	101288791	+	935.900024	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001111111)	TTS (NM_001111111)	13397.0	NM_001111111	73683.0	Mm.275744	NM_001111111	ENSMUSG00000047767	Atg16l2	2410118P20Rik	autophagy related 16-like 2 (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117268219-4	chr8	117268119	117268319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	11200.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-181497107-4	chr2	181496999	181497199	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291201)	promoter-TSS (NM_001291201)	-43.0	NM_001291203	66314.0	Mm.136648	NM_025482	ENSMUSG00000000827	Tpd52l2	2810411G23Rik|AU016537|C86069|D54	tumor protein D52-like 2	protein-coding	1.95002243020701	2.18813257851157	3.15361303107442	2.57196659939372	2.99954959576183	2.96285790271932	2.13105680551687	1.88791914002255	0.0805138155804872	0.922614554242003	0.998431161219273
Merged-chr6-46281201-4	chr6	46281098	46281298	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004357, intron 10 of 23)	L1MB1|LINE|L1	-963198.0	NM_025771	66797.0	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	1.50059394442117	1.01818092464527	2.4300466766322	2.42920562370913	1.5144292457346	1.02410681020806	2.45123441352303	0.973414934963845	-0.820436279151296	0.51059727885591	0.94512318675548
Merged-chr19-60165452-1	chr19	60165352	60165552	+	675.0	f1_balb.idr	Intergenic	Intergenic	20777.0	NR_026942	107376.0	Mm.245813	NR_026942	ENSMUSG00000053117	E330013P04Rik	9930018I18Rik|AW492152	RIKEN cDNA E330013P04 gene	ncRNA	2.36406470105929	1.09049474326475	1.04926526386296	2.41346622793301	3.2398095366935	1.09944383572821	1.05858460487313	3.2661892182408	1.36694631616424	0.572753422043337	0.9642510137057
Merged-chr2-14055229-4	chr2	14055112	14055312	+	890.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001012396, intron 1 of 5)	CpG	823.0	NM_001012396	30963.0	Mm.241205	NM_013935	ENSMUSG00000063275	Hacd1	Ptpla	3-hydroxyacyl-CoA dehydratase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-96889018-3	chr11	96888839	96889039	+	925.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27575.0	NM_001308183	80280.0	Mm.28297	NM_030248	ENSMUSG00000018669	Cdk5rap3	1810007E24Rik|BC002318|C53|C81486|HSF-27|IC53|LZAP|MST016	CDK5 regulatory subunit associated protein 3	protein-coding	3.05455861766898	3.26928174024894	2.98185825136574	1.44622749428092	3.27034249307447	3.2934046880014	3.00583542232286	1.45391375482755	0.144801722204102	0.868226938211401	0.998431161219273
Merged-chr5-117978082-4	chr5	117977992	117978192	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346588, intron 2 of 11)	intron (NM_001346588, intron 2 of 11)	1322.0	NM_001346588	231670.0	Mm.21912	NM_145564	ENSMUSG00000032898	Fbxo21	2810425J22Rik|AU016673	F-box protein 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-79806850-1	chr9	79806750	79806950	+	558.0	f0_balb.idr	Intergenic	Intergenic	13209.0	NR_040734	74633.0	Mm.262175	NR_040734	ENSMUSG00000086918	4930429F24Rik	-	RIKEN cDNA 4930429F24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-90607486-3	chr6	90607430	90607630	+	789.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027868, intron 1 of 10)	intron (NM_027868, intron 1 of 10)	2650.0	NM_027868	71699.0	Mm.272633	NM_027868	ENSMUSG00000030089	Slc41a3	1010001P06Rik|AI480742|SLC41A1-L2	solute carrier family 41, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-42801152-2	chr6	42801052	42801252	+	675.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11111.0	NM_001011869	258207.0	Mm.377378	NM_001011869	ENSMUSG00000094192	Olfr452	MOR257-5P	olfactory receptor 452	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-114091208-2	chr7	114091108	114091308	+	811.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025846, intron 1 of 5)	intron (NM_025846, intron 1 of 5)	26573.0	NM_025846	66922.0	Mm.276572	NM_025846	ENSMUSG00000055723	Rras2	2610016H24Rik|C86394|TC21	related RAS viral (r-ras) oncogene 2	protein-coding	-1.17548259612893	-1.15151556669643	-0.993759823691155	-1.17101671941623	-0.697239103652171	-1.14919542171728	-1.15979835608045	-1.16944248224289	1.47493997988595	0.655975420262184	1
Merged-chr8-120535184-4	chr8	120535098	120535298	+	998.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145897)	promoter-TSS (NM_001145897)	-659.0	NM_001145897	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-24452505-4	chr5	24452402	24452602	+	807.966675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_139153, exon 1 of 18)	exon (NM_139153, exon 1 of 18)	325.0	NM_139153	213990.0	Mm.250703	NM_139153	ENSMUSG00000023353	Agap3	AGAP-3|AV028425|Centg3|Crag|Crag.|MRIP-1|cnt-g3	ArfGAP with GTPase domain, ankyrin repeat and PH domain 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131974270-4	chr1	131974162	131974362	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145977, intron 1 of 4)	intron (NM_145977, intron 1 of 4)	3653.0	NM_145977	212980.0	Mm.200307	NM_145977	ENSMUSG00000026435	Slc45a3	2210413P12Rik|AU023994|AU043764|IPCA-6|PRST|Pcanap6	solute carrier family 45, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-62238100-2	chr10	62238000	62238200	+	699.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6882.0	NM_197996	70423.0	Mm.416781	NM_197996	ENSMUSG00000037031	Tspan15	1110036D12Rik|2700063A19Rik|AW048364|Tm4sf15	tetraspanin 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-9537923-2	chr11	9537823	9538023	+	644.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178259, intron 47 of 61)	intron (NM_178259, intron 47 of 61)	345981.0	NM_178259	268379.0	Mm.39270	NM_178259	ENSMUSG00000004668	Abca13	9830132L24|A930002G16Rik|AI956815	ATP-binding cassette, sub-family A (ABC1), member 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6531991-2	chr19	6531891	6532091	+	658.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001205235, exon 22 of 22)	exon (NM_001205235, exon 22 of 22)	11079.0	NM_009203	20521.0	Mm.391146	NM_009203	ENSMUSG00000061742	Slc22a12	AI987855|OAT4L|Rst|Slc22al2|URAT1	solute carrier family 22 (organic anion/cation transporter), member 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-181722152-2	chr2	181722052	181722252	+	778.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6462.0	NM_001318924	18389.0	Mm.285075	NM_011012	ENSMUSG00000027584	Oprl1	KOR-3|KOR3|LC132|MOR-C|NOP|ORGC|ORL1|Oprl|XOR1|morc	opioid receptor-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-67231908-2	chr7	67231808	67232008	+	789.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001291191, exon 11 of 11)	3' UTR (NM_001291191, exon 11 of 11)	9292.0	NM_001191051	75099.0	Mm.121691	NM_175215	ENSMUSG00000043831	Lysmd4	4930506D23Rik	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-135417624-2	chr6	135417524	135417724	+	705.0	f0_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50131.0	NM_001288627	13730.0	Mm.182785	NM_010128	ENSMUSG00000030208	Emp1	I-8-09|TMP	epithelial membrane protein 1	protein-coding	0.994614705214297	0.691959655612524	0.676419794680366	1.82050129683869	1.72103728880645	0.695409083872056	0.679881499419266	1.66456281018225	0.482090544851955	0.75875934088174	0.998431161219273
Merged-chr4-19682706-4	chr4	19682600	19682800	+	950.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_074090, intron 2 of 24)	intron (NR_074090, intron 2 of 24)	26304.0	NM_177327	107568.0	Mm.78312	NM_177327	ENSMUSG00000041058	Wwp1	8030445B08Rik|AIP5|SDRP1|Tiul1	WW domain containing E3 ubiquitin protein ligase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-28480175-4	chr6	28480080	28480280	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019776)	promoter-TSS (NM_019776)	-168.0	NM_019776	56463.0	Mm.439987	NM_019776	ENSMUSG00000001424	Snd1	AL033314|Tudor-SN	staphylococcal nuclease and tudor domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-105785284-3	chr1	105785199	105785399	+	897.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009399, intron 1 of 9)	intron (NM_009399, intron 1 of 9)	4576.0	NM_009399	21934.0	Mm.6251	NM_009399	ENSMUSG00000026321	Tnfrsf11a	Ly109|ODFR|OFE|Rank|TRANCE-R|mRANK	tumor necrosis factor receptor superfamily, member 11a, NFKB activator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117853662-4	chr8	117853550	117853750	+	671.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	-51676.0	NM_001357232	68533.0	Mm.181836	NM_026758	ENSMUSG00000031843	Mphosph6	1110001M01Rik|AA536809|C86426	M phase phosphoprotein 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141463524-2	chr7	141463424	141463624	+	851.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001025103, exon 2 of 10)	exon (NM_001025103, exon 2 of 10)	380.0	NR_152220	100126795.0	Mm.386851	NR_152219	ENSMUSG00000073787	Gm10575	-	predicted gene 10575	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-58383455-4	chr10	58383358	58383558	+	790.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201242, intron 1 of 9)	intron (NM_201242, intron 1 of 9)	-10915.0	NM_001193303	110829.0	Mm.57734	NM_026148	ENSMUSG00000019920	Lims1	2310016J22Rik|4921524A02Rik|AI507642|AU021743|AW551584|C430041B13Rik|Lims1l|PINCH|PINCH1	LIM and senescent cell antigen-like domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-25384996-2	chr15	25384896	25385096	+	885.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027395, intron 1 of 1)	intron (NM_027395, intron 1 of 1)	28768.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-12997296-4	chr10	12997194	12997394	+	977.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11156.0	NM_175102	66125.0	Mm.29743	NM_175102	ENSMUSG00000078348	Sf3b5	10kDa|1110005L13Rik|AU043053|Sf3b10	splicing factor 3b, subunit 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-25185754-2	chr12	25185654	25185854	+	548.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56580.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-11447429-2	chr19	11447329	11447529	+	975.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021718, intron 1 of 6)	intron (NM_021718, intron 1 of 6)	3871.0	NM_021718	60361.0	Mm.33957	NM_021718	ENSMUSG00000056290	Ms4a4b	AI463180|Chandra|Ly116	membrane-spanning 4-domains, subfamily A, member 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70883006-4	chr14	70882891	70883091	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7116.0	NM_001302095	14586.0	Mm.32619	NM_008115	ENSMUSG00000022103	Gfra2	-	glial cell line derived neurotrophic factor family receptor alpha 2	protein-coding	4.55152216862545	4.5743148158423	5.68691760081196	5.15253052297776	4.4195350039279	4.71673377686085	4.76448880750775	4.71637056320991	-0.504740024219248	0.173445424417056	0.640902961210202
Merged-chr2-28818043-2	chr2	28817943	28818143	+	759.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22317.0	NM_172977	269252.0	Mm.26043	NM_172977	ENSMUSG00000035666	Gtf3c4	5330400C03|AI426938|AU014771|AU017413|KAT12|TFIIIC90	general transcription factor IIIC, polypeptide 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-114457339-4	chr13	114457241	114457441	+	785.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301375, intron 1 of 5)	CpG	1610.0	NM_001301373	14313.0	Mm.4913	NM_008046	ENSMUSG00000021765	Fst	AL033346|FS	follistatin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-88094584-4	chr4	88094502	88094702	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081184)	promoter-TSS (NM_001081184)	-28.0	NM_001081184	230393.0	Mm.287210	NM_001081184	ENSMUSG00000038368	Focad	-	focadhesin	protein-coding	6.13056713384386	6.47414129327412	6.54178822053544	6.85264141496785	2.47754571232593	1.96979784374806	2.78873425530192	3.47443695709147	-4.62232741680265	7.3659055164568e-27	1.89377430828104e-23
Merged-chr7-29231625-4	chr7	29231527	29231727	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033525, intron 1 of 2)	intron (NM_001033525, intron 1 of 2)	895.0	NM_001033525	52150.0	Mm.24877	NM_001033525	ENSMUSG00000046410	Kcnk6	D7Ertd764e|Toss|Twik2	potassium inwardly-rectifying channel, subfamily K, member 6	protein-coding	2.57341103242424	1.57388176264032	2.40147328808481	3.38337953720483	2.88077546503443	3.85874736775204	3.12789946402291	2.48772664969938	0.935853795179272	0.229003001081824	0.72208302043938
Merged-chr2-76604590-2	chr2	76604490	76604690	+	733.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2C_Mm|LTR|ERVL	43404.0	NM_011871	23992.0	Mm.277250	NM_011871	ENSMUSG00000002731	Prkra	AV120107|PRK|Pact|RAX|lear	protein kinase, interferon inducible double stranded RNA dependent activator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-99180507-4	chr9	99180435	99180635	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40324.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	2.77522493782734	2.0811848157782	3.42629141484086	3.75126456572134	4.06994965217924	3.16095021292205	3.5360635312965	3.98713221192448	0.89192587563349	0.149730270357582	0.601628862608932
Merged-chr1-166154344-4	chr1	166154252	166154452	+	882.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001360926)	TTS (NM_001360926)	24131.0	NM_001360925	59290.0	Mm.46357	NM_021610	ENSMUSG00000000544	Gpa33	2010310L10Rik|2210401D16Rik|BB116197|mA33	glycoprotein A33 (transmembrane)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-65699043-4	chr17	65698960	65699160	+	996.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133685, intron 3 of 6)	intron (NM_133685, intron 3 of 6)	-56856.0	NM_001146002	213272.0	Mm.255732	NM_153519	ENSMUSG00000050612	Txndc2	AU021712|Sptrx-1|Sptrx1|Trx4	thioredoxin domain containing 2 (spermatozoa)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-102623349-2	chr4	102623249	102623449	+	670.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33506.0	NM_001177981	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5528163-1	chr19	5528063	5528263	+	652.0	f1_balb.idr	Intergenic	Intergenic	-17646.0	NM_001024560	225861.0	Mm.20071	NM_001024560	ENSMUSG00000056185	Snx32	B930037P14Rik|Snx6b	sorting nexin 32	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-36849668-4	chr17	36849579	36849779	+	955.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025599, intron 2 of 9)	intron (NM_001025599, intron 2 of 9)	12533.0	NM_001286726	22670.0	Mm.34587	NM_030698	ENSMUSG00000024457	Trim26	AI462198|Zfp173|Zfp1736	tripartite motif-containing 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-127634278-4	chr3	127634146	127634346	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009718, exon 2 of 2)	exon (NM_009718, exon 2 of 2)	1110.0	NM_009718	11924.0	Mm.42017	NM_009718	ENSMUSG00000027967	Neurog2	Atoh4|Math4A|bHLHa8|ngn-2|ngn2	neurogenin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45702608-2	chr7	45702508	45702708	+	789.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_009800, exon 4 of 9)	exon (NM_009800, exon 4 of 9)	-2639.0	NM_016974	13170.0	Mm.24222	NM_016974	ENSMUSG00000059824	Dbp	-	D site albumin promoter binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-59327636-2	chr2	59327536	59327736	+	811.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 11 of 20)	intron (NM_175464, intron 11 of 20)	59046.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-95876450-2	chr11	95876350	95876550	+	590.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008081, intron 5 of 10)	intron (NM_008081, intron 5 of 10)	17633.0	NR_045187	73906.0	Mm.399894	NR_045187	ENSMUSG00000086015	4833417C18Rik	-	RIKEN cDNA 4833417C18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-100152852-4	chr13	100152751	100152951	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001126182, intron 12 of 15)	intron (NM_001126182, intron 12 of 15)	27996.0	NM_011420	20595.0	Mm.2025	NM_011420	ENSMUSG00000021645	Smn1	AI849087|Gemin1|Smn	survival motor neuron 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-4196790-2	chr12	4196690	4196890	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_138305, exon 6 of 21)	exon (NM_138305, exon 6 of 21)	37175.0	NM_134046	52504.0	Mm.70546	NM_134046	ENSMUSG00000020652	Cenpo	2810429O05Rik|8430427C03Rik|D12Ertd482e	centromere protein O	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-74652159-3	chr11	74652053	74652253	+	866.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081158, intron 1 of 25)	intron (NM_001081158, intron 1 of 25)	2658.0	NM_001081158	74148.0	Mm.214574	NM_001081158	ENSMUSG00000020741	Cluh	1300001I01Rik|Kiaa0664|mKIAA0664	clustered mitochondria (cluA/CLU1) homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-182562804-4	chr1	182562709	182562909	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2198.0	NM_001145806	170725.0	Mm.189201	NM_130890	ENSMUSG00000038599	Capn8	nCL-2|nCL-2'	calpain 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-109123549-2	chr9	109123449	109123649	+	773.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28113.0	NM_172775	235611.0	Mm.53862	NM_172775	ENSMUSG00000053646	Plxnb1	2900002G15Rik|AU042020|mKIAA0407	plexin B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-133623-1	chr1	133523	133723	+	909.0	f1_c57bl6.idr	Intergenic	Intergenic	3537875.0	NM_001011874	497097.0	Mm.454496	NM_001011874	ENSMUSG00000051951	Xkr4	AY534250|Gm210|XRG4|mKIAA1889	X-linked Kx blood group related 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-5139132-3	chr18	5139024	5139224	+	759.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26607.0	NR_153824	102637682.0	Mm.451914	NR_153824		Gm26682	Gm38715	predicted gene, 26682	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83381808-4	chr6	83381696	83381896	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347313, intron 5 of 11)	intron (NM_001347313, intron 5 of 11)	19306.0	NR_105793	102465194.0		NR_105793	ENSMUSG00000099045	Mir6374	Gm27292|mmu-mir-6374	microRNA 6374	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-136141523-1	chr4	136141423	136141623	+	1000.0	f1_balb.idr	Intergenic	B1_Mur3|SINE|Alu	-2299.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-25581860-4	chr2	25581802	25582002	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1803.0	NM_001005424	381353.0	Mm.379511	NM_001005424	ENSMUSG00000029419	Gm996	Ajm1	predicted gene 996	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-72843723-4	chr12	72843624	72843824	+	844.770874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	74041.0	NM_029444	75801.0	Mm.242892	NM_029444	ENSMUSG00000021098	4930447C04Rik	4921504I02Rik|A930035O15Rik|Six6OS|Six6as|Six6os1	RIKEN cDNA 4930447C04 gene	protein-coding	-1.56355737717652	-1.81244775989375	-1.82128546162293	-1.82854501295842	-1.83962066705452	-1.81053259306168	-1.81928479966835	-1.82724555674025	-1.28500227969968	0.715751224811686	1
Merged-chr5-64508764-2	chr5	64508664	64508864	+	748.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31756.0	NR_045413	77382.0	Mm.366742	NR_045411	ENSMUSG00000105352	C030018K13Rik	-	RIKEN cDNA C030018K13 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-62678416-2	chr4	62678316	62678516	+	825.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310706, intron 1 of 6)	intron (NM_001310706, intron 1 of 6)	4442.0	NM_001310706	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-6522961-4	chr11	6522894	6523094	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2036.0	NM_178440	246177.0	Mm.239554	NM_178440	ENSMUSG00000020437	Myo1g	E430002D17Rik	myosin IG	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-130738742-4	chr4	130738643	130738843	+	767.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356564, intron 7 of 20)	intron (NM_001356564, intron 7 of 20)	-10895.0	NR_028565	100217460.0		NR_028565	ENSMUSG00000065196	Snord85	MBII-251|Z50	small nucleolar RNA, C/D box 85	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30094934-7	chr7	30094828	30095028	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011981)	promoter-TSS (NM_011981)	-148.0	NM_011981	26466.0	Mm.195092	NM_011981	ENSMUSG00000049421	Zfp260	AI480997|Ozrf1|PEX1|Zfp63|Znf260	zinc finger protein 260	protein-coding	3.97195278882196	3.86565181539434	3.15199088978112	2.69411133835196	4.32996832630885	3.04682600482742	2.94000970529838	3.07603434829473	-0.0222879040821266	0.971850043652882	0.998431161219273
Merged-chr8-85553281-1	chr8	85553181	85553381	+	565.0	f1_balb.idr	exon (NM_019794, exon 3 of 9)	exon (NM_019794, exon 3 of 9)	1990.0	NM_019794	56445.0	Mm.475573	NM_019794	ENSMUSG00000031701	Dnaja2	1500017M13Rik|2010206B19Rik|DNAJ|DNJ3|Dnaj3|HIRIP4|PRO3015|mDj3	DnaJ heat shock protein family (Hsp40) member A2	protein-coding	0.0570182632296495	0.920882467100587	0.0751436967925108	0.0683991913117647	0.238208636333155	0.0856949245176723	0.0770570747745902	1.16795516368966	0.725463047000023	0.728156219613229	1
Merged-chr15-84466618-4	chr15	84466513	84466713	+	993.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19516.0	NM_001163145	72301.0	Mm.275387	NM_001163145	ENSMUSG00000062760	1810041L15Rik	Kiaa1644|Shisal1	RIKEN cDNA 1810041L15 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-86916006-2	chr10	86915906	86916106	+	776.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_138673, intron 31 of 68)	MTC|LTR|ERVL-MaLR	91936.0	NM_138673	192188.0	Mm.279611	NM_138673	ENSMUSG00000035459	Stab2	FEEL-2|FELL|MFEEL-2|STAB-2	stabilin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-45873457-2	chr1	45873357	45873557	+	861.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52137.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-7984123-2	chr6	7984023	7984223	+	721.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	138899.0	NM_052993	94192.0	Mm.102752	NM_052993	ENSMUSG00000042460	C1galt1	2210410E06Rik|AV284120|T-synthase	core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-32494831-4	chr19	32494738	32494938	+	940.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010799, intron 3 of 4)	intron (NM_010799, intron 3 of 4)	9069.0	NM_010799	17330.0	Mm.255116	NM_010799	ENSMUSG00000024896	Minpp1	AA408516	multiple inositol polyphosphate histidine phosphatase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-44842252-2	chr18	44842152	44842352	+	659.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163013, intron 7 of 29)	intron (NM_001163013, intron 7 of 29)	13587.0	NM_001163013	240255.0	Mm.244482	NM_001163013	ENSMUSG00000034653	Ythdc2	3010002F02Rik|BC037178	YTH domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-41021575-1	chr8	41021475	41021675	+	734.0	f1_c57bl6.idr	intron (NR_015457, intron 2 of 2)	B4A|SINE|B4	4107.0	NR_015457	78849.0	Mm.440930	NR_015457	ENSMUSG00000084960	B430010I23Rik	-	RIKEN cDNA B430010I23 gene	ncRNA	0.385626990349408	-0.371531217217063	-0.591850862915274	-0.595388764037451	-0.600418322307967	-0.586266961354346	-0.590842663925924	-0.594769444262016	-3.62202901741322	0.176692840203838	1
Merged-chr1-143777804-3	chr1	143777732	143777932	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013835)	promoter-TSS (NM_013835)	554.0	NM_019562	56207.0	Mm.261004	NM_019562	ENSMUSG00000018189	Uchl5	5830413B11Rik|Uch37	ubiquitin carboxyl-terminal esterase L5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-23057511-3	chr19	23057421	23057621	+	785.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-83705.0	NM_010638	16601.0	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|Gm9971	Kruppel-like factor 9	protein-coding	0.530618886914325	-0.108412452342287	0.0682639081729312	-0.117844557472627	-0.123665277316577	-0.10721439859535	0.583448080100729	-0.117125845270698	-0.133581206997927	0.95412923014514	1
Merged-chr7-16402070-3	chr7	16401977	16402177	+	836.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198631, intron 1 of 13)	intron (NM_198631, intron 1 of 13)	881.0	NM_198631	330474.0	Mm.333594	NM_198631	ENSMUSG00000059273	Zc3h4	Bwq1|Gm768|Kiaa1064-hp|mKIAA1064	zinc finger CCCH-type containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-58207693-2	chr15	58207593	58207793	+	666.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026346, intron 2 of 8)	B2_Mm2|SINE|B2	7199.0	NM_026346	67731.0	Mm.25683	NM_026346	ENSMUSG00000022358	Fbxo32	4833442G10Rik|AI430017|ATROGIN1|Gm20361|MAFbx	F-box protein 32	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-40853368-2	chr3	40853268	40853468	+	857.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_045392)	TTS (NR_045392)	1917.0	NR_045392	100039043.0	Mm.460823	NM_001129886		Gm10731	-	FUN14 domain containing 2 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5640543-1	chr19	5640443	5640643	+	551.0	f1_c57bl6.idr	intron (NM_009045, intron 6 of 10)	intron (NM_009045, intron 6 of 10)	3053.0	NM_009045	19697.0	Mm.249966	NM_009045	ENSMUSG00000024927	Rela	p65	v-rel reticuloendotheliosis viral oncogene homolog A (avian)	protein-coding	2.25397329761027	1.85538252794188	1.28451432906641	2.31388856240905	2.05273983048835	1.07378647705244	1.49141138668002	1.03102768107017	-1.419876865319	0.229067359918318	0.722109875013131
Merged-chr19-46077378-2	chr19	46077278	46077478	+	591.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039351, intron 1 of 12)	intron (NM_001039351, intron 1 of 12)	1531.0	NM_001039351	70769.0	Mm.402190	NM_053086	ENSMUSG00000015176	Nolc1	NOPP130|NOPP140|P130	nucleolar and coiled-body phosphoprotein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-57803315-4	chr6	57803209	57803409	+	962.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146168, intron 1 of 4)	Lx8|LINE|L1	21816.0	NM_146168	232023.0	Mm.24642	NM_146168	ENSMUSG00000037788	Vopp1	AW146242|Ecop	vesicular, overexpressed in cancer, prosurvival protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-48323308-4	chr17	48323194	48323394	+	767.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177083, intron 5 of 5)	PB1D11|SINE|Alu	7132.0	NM_177083	320148.0	Mm.123455	NM_177083	ENSMUSG00000043740	B430306N03Rik	Treml6	RIKEN cDNA B430306N03 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-65188480-4	chr3	65188368	65188568	+	994.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289450, intron 1 of 14)	intron (NM_001289450, intron 1 of 14)	365.0	NM_001289450	16497.0	Mm.316402	NM_010597	ENSMUSG00000027827	Kcnab1	Akr8a8|Kvbeta1.1|mKv(beta)1	potassium voltage-gated channel, shaker-related subfamily, beta member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-63338565-4	chr10	63338464	63338664	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019812, intron 1 of 8)	CpG	471.0	NM_019812	93759.0	Mm.351459	NM_019812	ENSMUSG00000020063	Sirt1	AA673258|SIR2L1|Sir2|Sir2a|Sir2alpha	sirtuin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43499656-4	chr4	43499556	43499756	+	999.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001013377, exon 4 of 12)	5' UTR (NM_001013377, exon 4 of 12)	6291.0	NM_001037913	622404.0	Mm.289109	NM_001037913	ENSMUSG00000028461	Ccdc107	-	coiled-coil domain containing 107	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-46534691-4	chr4	46534616	46534816	+	999.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029077, intron 1 of 5)	intron (NM_029077, intron 1 of 5)	-1185.0	NR_151695	105247126.0	Mm.477962	NR_151695		Gm16731	-	predicted gene, 16731	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-4807776-4	chr1	4807670	4807870	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008866)	promoter-TSS (NM_008866)	-53.0	NM_001355712	18777.0	Mm.299955	NM_008866	ENSMUSG00000025903	Lypla1	APT-1|Gm39587|LPL-I|Pla1a	lysophospholipase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-147564375-4	chr5	147564264	147564464	+	962.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010228, exon 30 of 30)	exon (NM_010228, exon 30 of 30)	134208.0	NM_028291	72587.0	Mm.320469	NM_028291	ENSMUSG00000029647	Pan3	2700050F09Rik|A430027N15Rik|AU014670	PAN3 poly(A) specific ribonuclease subunit	protein-coding	4.13946851381356	4.89973983009017	5.14632714510456	4.30152680095877	4.95144886026065	4.75064307176681	3.33494160473229	4.37526599484049	-0.244126547289937	0.583073190287299	0.966599221005409
Merged-chr11-51580437-2	chr11	51580337	51580537	+	893.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_153393, exon 29 of 29)	3' UTR (NM_153393, exon 29 of 29)	-4320.0	NM_028398	72947.0	Mm.256875	NM_028398	ENSMUSG00000020359	Phykpl	2900006B13Rik|Agxt2l2	5-phosphohydroxy-L-lysine phospholyase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-75181236-2	chr14	75181136	75181336	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008879, intron 2 of 16)	intron (NM_008879, intron 2 of 16)	44811.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70608777-3	chr11	70608669	70608869	+	812.133362	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045964, intron 18 of 32)	intron (NM_001045964, intron 18 of 32)	-7125.0	NM_001145537	668433.0	Mm.425687	NM_001145537	ENSMUSG00000087279	4930544D05Rik	-	RIKEN cDNA 4930544D05 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-125731744-2	chr8	125731644	125731844	+	810.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2459.0	NM_025636	66566.0	Mm.25296	NM_025636	ENSMUSG00000031851	Ntpcr	2310079N02Rik|AI449709	nucleoside-triphosphatase, cancer-related	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-4870704-4	chr1	4870625	4870825	+	834.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159750, intron 2 of 9)	MTD|LTR|ERVL-MaLR	12397.0	NM_001159751	21399.0	Mm.207263	NM_011541	ENSMUSG00000033813	Tcea1	S-II	transcription elongation factor A (SII) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-37026614-3	chr17	37026514	37026714	+	784.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR23|LTR|ERV1	-3216.0	NM_010814	17441.0	Mm.210857	NM_010814	ENSMUSG00000076439	Mog	B230317G11Rik	myelin oligodendrocyte glycoprotein	protein-coding	0.639101421326075	0.686729331213466	1.24125720198192	0.659544647938761	1.55212269116386	1.79641206690376	1.62215079256004	0.66165567591733	2.75233169161659	0.081325988118184	0.435621007578746
Merged-chr2-180209547-2	chr2	180209447	180209647	+	838.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081171, intron 2 of 78)	B3|SINE|B2	16312.0	NM_001081171	16776.0	Mm.4339	NM_001081171	ENSMUSG00000015647	Lama5	AA408760|AA408762|AI853660|[a]5|laminin-511|mKIAA0533	laminin, alpha 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-79531644-2	chr11	79531534	79531734	+	767.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010897, intron 36 of 57)	Lx5c|LINE|L1	-1025.0	NM_010161	14017.0	Mm.439665	NM_010161	ENSMUSG00000078771	Evi2a	AW491894|Evi-2|Evi2	ecotropic viral integration site 2a	protein-coding	1.24067096913842	2.26894370694374	0.872343310214166	0.850479158499356	1.80195103254455	2.7686531857575	0.878442100072451	1.50527257646771	1.19385590933611	0.354538140517022	0.853391720177295
Merged-chr1-192093650-2	chr1	192093550	192093750	+	577.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1051.0	NM_011633	22033.0	Mm.380491	NM_011633		Traf5	-	TNF receptor-associated factor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-20057759-4	chr3	20057667	20057867	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009210)	promoter-TSS (NM_009210)	-44.0	NM_009210	20585.0	Mm.209650	NM_009210	ENSMUSG00000002428	Hltf	AF010600|BC057116|P113|Smarca3|Snf2l3	helicase-like transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-53434053-1	chr19	53433953	53434153	+	630.333313	f1_balb.idr	Intergenic	Intergenic	30743.0	NR_028427	381232.0	Mm.248624	NR_028427	ENSMUSG00000097636	Mirt1	4833407H14Rik|5430437C04Rik|5830416P10Rik|Gm10758	myocardial infarction associated transcript 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-134188133-2	chr5	134188033	134188233	+	576.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359852, intron 1 of 14)	B1_Mus2|SINE|Alu	4095.0	NM_053266	114674.0	Mm.218744	NM_053266	ENSMUSG00000015942	Gtf2ird2	1700012P16Rik	GTF2I repeat domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-67387880-2	chr18	67387780	67387980	+	695.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2851.0	NM_026473	67951.0	Mm.181860	NM_026473	ENSMUSG00000001473	Tubb6	2310057H16Rik|BB220206	tubulin, beta 6 class V	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-55131157-4	chr1	55131071	55131271	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025283)	promoter-TSS (NM_025283)	-74.0	NM_001310585	19070.0	Mm.291037	NM_025283	ENSMUSG00000025979	Mob4	2610109B12Rik|Mobkl3|Phocn|Prei3	MOB family member 4, phocein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-133660852-2	chr1	133660738	133660938	+	687.583374	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_001166552)	promoter-TSS (NM_001166552)	47.0	NM_001166552	667118.0	Mm.245357	NM_001166552	ENSMUSG00000102049	Zbed6	Gm8466|MGR	zinc finger, BED type containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-103234727-4	chr9	103234618	103234818	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4432.0	NM_133977	22041.0	Mm.37214	NM_133977	ENSMUSG00000032554	Trf	AI266983|Cd176|HP|Tf|Tfn|hpx	transferrin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-39005905-2	chr2	39005805	39006005	+	759.666687	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025592)	promoter-TSS (NM_025592)	-774.0	NM_025592	66489.0	Mm.345333	NM_025592	ENSMUSG00000062997	Rpl35	2410039E09Rik	ribosomal protein L35	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-78092851-3	chr10	78092725	78092925	+	888.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23457.0	NM_015790	50723.0	Mm.17819	NM_015790	ENSMUSG00000000732	Icosl	AU044799|B7-H2|B7RP-1|B7h|BG071784|GI50|GL50|GL50-B|ICOS-L|Icoslg|LICOS|Ly115l|mKIAA0653	icos ligand	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-94276202-2	chr2	94276102	94276302	+	667.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14803.0	NR_030431	735259.0		NR_030431	ENSMUSG00000076335	Mir670	Mirn670|mir-670|mmu-mir-670	microRNA 670	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-33920902-4	chr17	33920808	33921008	+	965.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025313, intron 3 of 7)	intron (NM_001025313, intron 3 of 7)	1430.0	NM_009318	21356.0	Mm.154457	NM_009318	ENSMUSG00000024308	Tapbp	D17Wsu91e|TPN	TAP binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-30864853-4	chr3	30864763	30864963	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286994, intron 1 of 3)	intron (NM_001286994, intron 1 of 3)	8913.0	NM_001286994	71862.0	Mm.272019	NM_027965	ENSMUSG00000037661	Gpr160	1700025D19Rik|GPCR150	G protein-coupled receptor 160	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-51921569-4	chr11	51921472	51921672	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46059.0	NM_029976	52626.0	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-105986396-2	chr11	105986296	105986496	+	706.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_104047)	promoter-TSS (NR_104047)	-702.0	NR_104047	100379610.0	Mm.754	NR_104047	ENSMUSG00000085297	Gm11651	-	predicted gene 11651	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-121340496-4	chr11	121340420	121340620	+	857.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025793, intron 3 of 9)	intron (NM_025793, intron 3 of 9)	13927.0	NM_025793	66840.0	Mm.103986	NM_025793	ENSMUSG00000025173	Wdr45b	0610008N23Rik|AA408735|D16Bwg0193e|WIPI-3|Wdr45l	WD repeat domain 45B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-9644944-2	chr4	9644844	9645044	+	689.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290367, intron 1 of 22)	intron (NM_001290367, intron 1 of 22)	-1227.0	NM_001177852	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	-2.18361151404719	-2.02201993626881	-2.16403530460334	-2.1710062446989	-2.18164157430194	-2.15370992785044	-2.16211418110791	-2.16975844975469	-0.683654500252594	0.846597994014493	1
Merged-chr3-75297192-4	chr3	75297074	75297274	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27096.0	NM_026460	67931.0	Mm.259446	NM_026460	ENSMUSG00000034139	Serpini2	Spi14	serine (or cysteine) peptidase inhibitor, clade I, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-43879842-3	chr19	43879730	43879930	+	801.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001306088)	promoter-TSS (NM_001306088)	-62.0	NM_001306088	71972.0	Mm.159024	NM_028029	ENSMUSG00000025195	Dnmbp	2410003L07Rik|2410003M15Rik|TUBA	dynamin binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72163344-4	chr6	72163277	72163477	+	955.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40180.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-5710137-3	chr2	5710026	5710226	+	696.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290374, intron 1 of 9)	intron (NM_001290374, intron 1 of 9)	4636.0	NM_001290374	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-101647440-4	chr4	101647381	101647581	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175036)	promoter-TSS (NM_175036)	-302.0	NM_175036	230514.0	Mm.4756	NM_175036	ENSMUSG00000035212	Leprot	LEPR|OB-RGRP|Obrgrp|VPS55	leptin receptor overlapping transcript	protein-coding	7.54568687180259	7.59100206757371	7.23151468756154	7.0105657486117	7.51806188446316	7.59596127287111	8.02617181486342	7.62987201653182	0.355300705269775	0.0390899442803816	0.281738952397138
Merged-chr12-81755799-2	chr12	81755699	81755899	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001174107, intron 2 of 10)	intron (NM_001174107, intron 2 of 10)	25371.0	NM_177395	338372.0	Mm.35284	NM_177395	ENSMUSG00000042724	Map3k9	E130314H24Rik|Mlk1|Prke1	mitogen-activated protein kinase kinase kinase 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167367983-4	chr2	167367878	167368078	+	927.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18800.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129746146-6	chr4	129746009	129746209	+	871.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-3806.0	NR_045036	20218.0	Mm.8256	NM_011317	ENSMUSG00000028790	Khdrbs1	Sam68|p62|p68	KH domain containing, RNA binding, signal transduction associated 1	protein-coding	2.28405428556739	1.31888834910492	2.48819501298299	2.68879898472372	1.64318008331831	1.3269663210749	2.70520356795451	3.05025021895674	0.201778464229443	0.842322529373707	0.998431161219273
Merged-chr8-47533564-4	chr8	47533457	47533657	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177240)	promoter-TSS (NM_177240)	-87.0	NM_177240	320714.0	Mm.39461	NM_177240	ENSMUSG00000038102	Trappc11	AW558465|D030016E14Rik|R75422	trafficking protein particle complex 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-8574745-4	chr11	8574647	8574847	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 4 of 30)	intron (NM_001083587, intron 4 of 30)	89788.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0.849015998716178	1.66084625811621	1.71911863429354	2.03109011573695	0.852717663317969	1.67477203605449	0.891799443318575	1.55637555263941	-1.10497750526043	0.41586172205877	0.896676881011847
Merged-chr10-75330343-3	chr10	75330243	75330443	+	740.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009630, intron 2 of 2)	intron (NM_009630, intron 2 of 2)	5485.0	NM_001331096	11540.0	Mm.333734	NM_009630	ENSMUSG00000020178	Adora2a	A2AAR|A2aR|AA2AR	adenosine A2a receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-52850530-4	chr12	52850437	52850637	+	925.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198111, intron 2 of 13)	intron (NM_198111, intron 2 of 13)	151154.0	NM_198111	238161.0	Mm.310822	NM_198111	ENSMUSG00000061603	Akap6	AI482140|Akapalpha|Akapbeta|PRKA	A kinase (PRKA) anchor protein 6	protein-coding	2.32956584938861	1.85361226281216	2.27502728966895	2.45890485415603	1.80013254968494	1.22827459177447	1.44306116920716	1.75234748761121	-1.91141334692039	0.0586295984059895	0.357801587830652
Merged-chr6-142580559-2	chr6	142580459	142580659	+	696.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	-8945.0	NM_001330366	16523.0	Mm.1482	NM_008428	ENSMUSG00000030247	Kcnj8	AI448900|Kir6.1|gnite|slmbr|sltr|uKATP-1	potassium inwardly-rectifying channel, subfamily J, member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-42026355-4	chr19	42026255	42026455	+	936.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145500, intron 1 of 2)	intron (NM_145500, intron 1 of 2)	-9683.0	NM_020033	56642.0	Mm.143737	NM_020033	ENSMUSG00000025172	Ankrd2	Arpp|mArpp	ankyrin repeat domain 2 (stretch responsive muscle)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-163930004-4	chr1	163929904	163930104	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_028776, exon 1 of 14)	5' UTR (NM_028776, exon 1 of 14)	239.0	NM_028776	240880.0	Mm.389213	NM_028776	ENSMUSG00000026584	Scyl3	1200016D23Rik|6030457O16|AW214499|Pace1	SCY1-like 3 (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-13417359-3	chr2	13417236	13417436	+	656.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081084, intron 27 of 66)	L3|LINE|CR1	74540.0	NM_001081084	65969.0	Mm.313915	NM_001081084	ENSMUSG00000026726	Cubn	AA408369|AL022750|D2Wsu88e	cubilin (intrinsic factor-cobalamin receptor)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-40803998-4	chr9	40803887	40804087	+	946.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031165, intron 6 of 8)	intron (NM_031165, intron 6 of 8)	2714.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-48036925-2	chr4	48036825	48037025	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-8380.0	NM_015743	18124.0	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-46372183-2	chr4	46372083	46372283	+	862.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17240.0	NM_029086	74753.0	Mm.45973	NM_029086	ENSMUSG00000028331	Trmo	5830415F09Rik|AV014846|Nap1	tRNA methyltransferase O	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-144223155-1	chr5	144223055	144223255	+	1000.0	f1_c57bl6.idr	intron (NM_027410, intron 1 of 24)	intron (NM_027410, intron 1 of 24)	460.0	NM_001356992	70381.0	Mm.239412	NM_027410	ENSMUSG00000066621	Tecpr1	2210010N04Rik|mKIAA1358	tectonin beta-propeller repeat containing 1	protein-coding	-0.946189498902753	-0.931575358611085	-0.94076171000006	-0.942807383787865	-0.573918262386353	-0.929017710499158	-0.940175780086088	-0.522856136696833	2.89469829273601	0.348654519402419	1
Merged-chr16-49907530-3	chr16	49907429	49907629	+	728.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010581, intron 9 of 9)	intron (NM_010581, intron 9 of 9)	-48301.0	NR_153658	100503490.0	Mm.72499	NR_153658		Gm19723	-	predicted gene, 19723	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-95161453-4	chr4	95161354	95161554	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-109232.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-8989322-3	chr19	8989211	8989411	+	893.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286518)	promoter-TSS (NM_001286518)	27.0	NM_001286518	66395.0	Mm.203866	NM_009643	ENSMUSG00000069833	Ahnak	DY6	AHNAK nucleoprotein (desmoyokin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-64436277-3	chr11	64436162	64436362	+	870.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_028445, exon 1 of 1)	non-coding (NR_028445, exon 1 of 1)	412.0	NR_028445	654805.0	Mm.436132	NR_028445		F930015N05Rik	-	RIKEN cDNA F930015N05 gene	ncRNA	-0.289851946104314	-0.737899168765768	-0.740932179010924	-0.743264539078787	-0.280173431323445	-0.737213951634147	-0.740264187498491	-0.742857569821679	0.0418983010157508	0.98887086484455	1
Merged-chr3-97660164-2	chr3	97660064	97660264	+	999.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_182997, intron 2 of 7)	intron (NM_182997, intron 2 of 7)	1952.0	NM_182997	108097.0	Mm.31175	NM_182997	ENSMUSG00000038205	Prkab2	5730553K21Rik|AW049591|BB124140	protein kinase, AMP-activated, beta 2 non-catalytic subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-136007999-3	chr5	136007879	136008079	+	935.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001256096, intron 2 of 10)	ZP3AR|Satellite|Satellite	13179.0	NM_001256098	74198.0	Mm.275574	NM_023742	ENSMUSG00000004947	Dtx2	2610524D08Rik|AA408415|AU022494|Deltex2	deltex 2, E3 ubiquitin ligase	protein-coding	0.92203465782466	0.987789291829979	1.82519202468546	1.76816514864862	1.87794682126781	0.992393764351049	2.31197058373753	1.65743554367398	1.0360921125899	0.419794072380384	0.899498409000238
Merged-chr10-23851430-3	chr10	23851327	23851527	+	971.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011979)	promoter-TSS (NM_011979)	-35.0	NM_011979	26464.0	Mm.27334	NM_011979	ENSMUSG00000020010	Vnn3	-	vanin 3	protein-coding	-0.177733621508433	-0.805752184127899	-0.808838537208662	-0.811215655782965	-0.543043920694761	-0.803068160812789	-0.808158328395888	-0.810800640862464	-1.36685470224649	0.652602213394196	1
Merged-chr4-59043191-3	chr4	59043070	59043270	+	703.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8014.0	NM_025277	14700.0	Mm.41780	NM_025277	ENSMUSG00000038607	Gng10	AV006524	guanine nucleotide binding protein (G protein), gamma 10	protein-coding	1.27923666974759	1.03418642754834	2.12885889381135	1.79430597957898	1.28765394718293	1.03695366232503	1.65181817025248	1.60024062276012	-0.847416489908109	0.498808286074651	0.937355406127753
Merged-chr17-81015990-4	chr17	81015945	81016145	+	842.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49040.0	NM_028138	72167.0	Mm.273257	NM_028138	ENSMUSG00000024246	Thumpd2	2810025A12Rik	THUMP domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-92879609-3	chr7	92879453	92879653	+	947.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028243, intron 1 of 8)	intron (NM_028243, intron 1 of 8)	4300.0	NM_028243	72461.0	Mm.389969	NM_028243	ENSMUSG00000061119	Prcp	2510048K03Rik|2610104A14Rik|AI451719|HUMPCP|PCP	prolylcarboxypeptidase (angiotensinase C)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-64061858-2	chr15	64061758	64061958	+	679.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-1410.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-40264090-3	chr9	40263989	40264189	+	696.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5127.0	NM_001083917	235281.0	Mm.290083	NM_153522	ENSMUSG00000049281	Scn3b	1110001K16Rik|4833414B02Rik|Scnb3	sodium channel, voltage-gated, type III, beta	protein-coding	1.69138606432225	1.75283973691059	0.994051327904639	1.8002906765324	1.22276188497635	0.795587302450208	0.780770452237222	0.767909490754008	-3.02468685454063	0.0404723546456967	0.286764160062443
Merged-chr18-75469245-3	chr18	75469158	75469358	+	912.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201354, intron 10 of 11)	ORR1F|LTR|ERVL-MaLR	-45387.0	NR_045879	100038353.0	Mm.440724	NR_045879	ENSMUSG00000097712	Gm10532	-	predicted gene 10532	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101287181-2	chr15	101287081	101287281	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_026566, exon 2 of 3)	exon (NM_026566, exon 2 of 3)	2880.0	NM_026566	68118.0	Mm.482360	NM_026566	ENSMUSG00000037204	Atg101	9430023L20Rik|AA407441|AU022967	autophagy related 101	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-184719849-2	chr1	184719749	184719949	+	575.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_040627)	TTS (NR_040627)	7352.0	NR_040627	74971.0	Mm.410816	NR_040627	ENSMUSG00000092578	4930488B22Rik	-	RIKEN cDNA 4930488B22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115472900-2	chr11	115472800	115473000	+	942.916626	f1_balb.idr|f1_c57bl6.idr	exon (NM_001080934, exon 4 of 4)	exon (NM_001080934, exon 4 of 4)	-2767.0	NM_177778	276905.0	Mm.38019	NM_177778	ENSMUSG00000057219	Armc7	A630084C13|BC023126	armadillo repeat containing 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-51615350-3	chr11	51615252	51615452	+	803.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4421.0	NM_026631	52530.0	Mm.28203	NM_026631	ENSMUSG00000001056	Nhp2	2410130M07Rik|D11Ertd175e|Nola2	NHP2 ribonucleoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-100081808-2	chr12	100081708	100081908	+	779.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-30523.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-28341405-2	chr6	28341305	28341505	+	942.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-79804.0	NM_001081678	627049.0	Mm.84441	NM_001081678	ENSMUSG00000039841	Zfp800	AA407452|Znf800	zinc finger protein 800	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-4849582-4	chr11	4849472	4849672	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361676)	promoter-TSS (NM_001361676)	-28.0	NM_010898	18016.0	Mm.297109	NM_010898	ENSMUSG00000009073	Nf2	merlin	neurofibromin 2	protein-coding	7.76787854326988	7.76658742933837	7.95338034865463	7.66011719222645	7.5862886761996	7.59318051139029	7.74177719217186	7.23412575157145	-0.250122890894117	0.0932337931394953	0.473260126816789
Merged-chr14-55591097-4	chr14	55591006	55591206	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011190)	promoter-TSS (NM_011190)	-5.0	NM_001029855	19188.0	Mm.371573	NM_011190	ENSMUSG00000079197	Psme2	AA589371|AI788882|PA28b	proteasome (prosome, macropain) activator subunit 2 (PA28 beta)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-125815830-1	chr8	125815730	125815930	+	620.0	f0_balb.idr	exon (NM_175561, exon 21 of 34)	exon (NM_175561, exon 21 of 34)	81627.0	NM_001310688	66566.0	Mm.25296	NM_025636	ENSMUSG00000031851	Ntpcr	2310079N02Rik|AI449709	nucleoside-triphosphatase, cancer-related	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127778301-2	chr7	127778201	127778401	+	902.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178029, intron 2 of 18)	intron (NM_178029, intron 2 of 18)	912.0	NM_178029	233904.0	Mm.435494	NM_010940	ENSMUSG00000042308	Setd1a	BC010250|KMT2F|Nsccn1|mKIAA0339|mNSC1	SET domain containing 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45432849-2	chr7	45432749	45432949	+	626.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011304, intron 1 of 14)	intron (NM_011304, intron 1 of 14)	1615.0	NM_011304	20174.0	Mm.34410	NM_011304	ENSMUSG00000003868	Ruvbl2	mp47|p47	RuvB-like protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-20969620-4	chr2	20969458	20969658	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033225, exon 2 of 2)	non-coding (NR_033225, exon 2 of 2)	684.0	NR_033225	433408.0	Mm.386941	NR_033225		Gm13375	-	predicted gene 13375	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-114909811-2	chr9	114909711	114909911	+	743.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175380, intron 5 of 7)	RLTR20C2_MM|LTR|ERVK	24176.0	NM_175380	333433.0	Mm.38198	NM_175380	ENSMUSG00000050627	Gpd1l	2210409H23Rik|D9Ertd660e	glycerol-3-phosphate dehydrogenase 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-119632688-2	chr6	119632588	119632788	+	542.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_155458, intron 14 of 18)	intron (NR_155458, intron 14 of 18)	-88341.0	NM_009525	22419.0	Mm.321818	NM_009525	ENSMUSG00000030170	Wnt5b	AW545702|Wnt-5b	wingless-type MMTV integration site family, member 5B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-120101567-1	chr2	120101467	120101667	+	553.0	f1_balb.idr	intron (NM_133838, intron 4 of 5)	intron (NM_133838, intron 4 of 5)	53008.0	NM_133838	98878.0	Mm.132226	NM_133838	ENSMUSG00000027293	Ehd4	2210022F10Rik|AI197390|AI846352|AV006278|Past2	EH-domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-120991924-2	chr4	120991824	120992024	+	803.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133716, intron 1 of 9)	intron (NM_133716, intron 1 of 9)	-18602.0	NR_105982	102465614.0		NR_105982	ENSMUSG00000106436	Mir7015	mmu-mir-7015	microRNA 7015	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-99072718-4	chr9	99072632	99072832	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029094, intron 9 of 23)	intron (NM_029094, intron 9 of 23)	-37042.0	NM_001080776	382097.0	Mm.293727	NM_001080776	ENSMUSG00000044860	Gm1123	AV052824|CLSP	predicted gene 1123	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-117284241-1	chr13	117284141	117284341	+	558.0	f0_balb.idr	Intergenic	Intergenic	63668.0	NM_010330	13723.0	Mm.274926	NM_010330	ENSMUSG00000021728	Emb	AL022799|Gp70	embigin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-12744976-1	chr2	12744876	12745076	+	554.0	f1_balb.idr	Intergenic	Intergenic	-179065.0	NM_008961	19212.0	Mm.229322	NM_008961	ENSMUSG00000026730	Pter	AI790318|Mpr56-1	phosphotriesterase related	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-59269026-4	chr10	59268921	59269121	+	749.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	47099.0	NM_172939	268301.0	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-128769481-2	chr6	128769381	128769581	+	547.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19160.0	NM_001159904	17059.0	Mm.480764	NM_008527	ENSMUSG00000030325	Klrb1c	AI462337|CD161|Klrb1b|Ly-59|Ly55c|Ly59|NK-RP1|NK1.1|NKR-P1.9|NKRP1|NKRP140|Nk-1|Nk-1.2|Nk1|Nk1.2|Nkrp1b|Nkrp1c|ly-55c	killer cell lectin-like receptor subfamily B member 1C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-57336513-2	chr17	57336413	57336613	+	691.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-22173.0	NM_001355723	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-95270984-2	chr11	95270884	95271084	+	704.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001195004)	TTS (NM_001195004)	9455.0	NM_053093	93670.0	Mm.40085	NM_053093	ENSMUSG00000020872	Tac4	AW489379|PPT-C	tachykinin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-45158770-4	chr16	45158706	45158906	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356453)	promoter-TSS (NM_001356453)	-23.0	NM_001356366	67841.0	Mm.41775	NM_026402	ENSMUSG00000022663	Atg3	2610016C12Rik|APG3|Apg3l|Atg3l|PC3-96	autophagy related 3	protein-coding	7.28975738500211	7.18950335817068	7.10861035140934	7.42561740415358	7.45757684861892	7.47501603571506	7.50380521748876	7.34567652701711	0.193475801781784	0.1975701189508	0.679718702856214
Merged-chr10-26039430-2	chr10	26039330	26039530	+	782.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029881, intron 1 of 1)	intron (NM_029881, intron 1 of 1)	-38825.0	NR_028030	100040851.0	Mm.478630	NR_028030	ENSMUSG00000039098	Gm9767	-	predicted gene 9767	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-19562823-3	chr10	19562718	19562918	+	846.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29131.0	NM_010511	15979.0	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-73403556-3	chr14	73403456	73403656	+	677.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-18267.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-127265280-2	chr6	127265180	127265380	+	567.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42687.0	NR_073373	232386.0	Mm.257367	NR_073373	ENSMUSG00000107153	Gm38404	D130058E03	predicted gene, 38404	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70057453-1	chr14	70057353	70057553	+	1000.0	f0_c57.idr	intron (NM_028560, intron 6 of 6)	intron (NM_028560, intron 6 of 6)	-19992.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-23850583-4	chr5	23850538	23850738	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045040)	promoter-TSS (NR_045040)	41.0	NR_045040	67194.0	Mm.423733	NR_045040	ENSMUSG00000097180	2700038G22Rik	-	RIKEN cDNA 2700038G22 gene	ncRNA	4.2511512069373	3.47620179753797	3.94007273808743	4.09239880951001	3.42574596179102	3.403100343667	2.26135109137832	2.37926041604623	-1.50760336796335	0.0101174260540897	0.109788677888265
Merged-chr9-64811975-1	chr9	64811875	64812075	+	1000.0	f0_balb.idr	intron (NM_001162917, intron 2 of 34)	CpG-15087	964.0	NM_001162917	102442.0	Mm.222473	NM_176935	ENSMUSG00000053641	Dennd4a	AI115600|AI851943|F730015K02Rik	DENN/MADD domain containing 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131087066-4	chr1	131086974	131087174	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008551, intron 1 of 9)	intron (NM_008551, intron 1 of 9)	10769.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-138327382-1	chr4	138327282	138327482	+	681.0	f0_c57.idr	Intergenic	RMER19B|LTR|ERVK	-1086.0	NM_026880	68943.0	Mm.18539	NM_026880	ENSMUSG00000028756	Pink1	1190006F07Rik|AU042772|AW557854|BRPK|mFLJ00387	PTEN induced putative kinase 1	protein-coding	-2.05752322593321	-2.15521190974092	-2.16307242109104	-2.16952927915413	-2.17938029103484	-2.15350850414045	-2.16129297361887	-2.16837350464794	-0.683654500252594	0.846597994014493	1
Merged-chr15-85669731-2	chr15	85669590	85669790	+	794.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34083.0	NR_110483	102800312.0	Mm.33117	NR_110483		Lncppara	Lincppara|Mirlet7bhg|linc-Ppara	long noncoding RNA near Ppara	ncRNA	-1.06997269762433	-1.30473905204845	-1.3145270772132	-1.32256725251374	-1.06385251204029	-1.30261794616352	-1.3123112828633	-1.32112806497905	0.0394047164033882	0.991001358494878	1
Merged-chr1-143853947-3	chr1	143853845	143854045	+	788.633362	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	76667.0	NM_019562	56207.0	Mm.261004	NM_019562	ENSMUSG00000018189	Uchl5	5830413B11Rik|Uch37	ubiquitin carboxyl-terminal esterase L5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-106821840-4	chr9	106821735	106821935	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001015507)	promoter-TSS (NM_001015507)	-141.0	NM_001015507	321006.0	Mm.440089	NM_001015507	ENSMUSG00000040325	Dcaf1	AI447437|B930007L02Rik|Vprbp|mKIAA0800	DDB1 and CUL4 associated factor 1	protein-coding	6.61108367403197	6.65184742124573	6.56935305698128	7.12371830013985	6.73204783594031	6.0373439969152	6.71847641142733	6.6902062694841	-0.191948271067664	0.372380714161041	0.865109408625856
Merged-chr1-105660217-3	chr1	105660104	105660304	+	729.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013784, intron 1 of 30)	intron (NM_013784, intron 1 of 30)	3472.0	NM_013784	27392.0	Mm.268911	NM_013784	ENSMUSG00000056536	Pign	Gm20308|PIG-N	phosphatidylinositol glycan anchor biosynthesis, class N	protein-coding	3.33789212662729	3.40909696030362	3.38227555558858	3.44062321315968	3.07007632814101	2.54591472561153	3.32274361941446	3.45753743032125	-0.400057502605781	0.490756858906922	0.934345795476137
Merged-chr11-107341957-2	chr11	107341857	107342057	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 1 of 9)	B3A|SINE|B2	128763.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-91027126-4	chr1	91027031	91027231	+	992.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111312, intron 1 of 12)	ORR1D2|LTR|ERVL-MaLR	-26313.0	NM_001111311	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131058806-2	chr1	131058706	131058906	+	600.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008551, intron 1 of 9)	intron (NM_008551, intron 1 of 9)	38961.0	NM_010548	16153.0	Mm.874	NM_010548	ENSMUSG00000016529	Il10	CSIF|Il-10	interleukin 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-101078743-2	chr9	101078643	101078843	+	668.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001100451, intron 1 of 1)	intron (NM_001100451, intron 1 of 1)	3981.0	NM_001100451	77853.0	Mm.326206	NM_001100451	ENSMUSG00000066415	Msl2	E130103E02Rik|Msl2l1|Rnf184	MSL complex subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-21832238-4	chr14	21832116	21832316	+	985.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011695, intron 2 of 9)	intron (NM_011695, intron 2 of 9)	655.0	NM_011695	22334.0	Mm.262327	NM_011695	ENSMUSG00000021771	Vdac2	Vdac6|mVDAC2|mVDAC6	voltage-dependent anion channel 2	protein-coding	4.78905598883453	4.24185421165107	5.26399051661706	4.84057754244827	4.5365671581984	4.410966144126	5.17369949799955	4.78615475114887	-0.0925296428080653	0.801787204324529	0.998431161219273
Merged-chr1-135370117-2	chr1	135370017	135370217	+	734.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4946.0	NM_175259	77552.0	Mm.41407	NM_175259	ENSMUSG00000041889	Shisa4	9330132O05Rik|Tmem58|mShisa4	shisa family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-18589900-2	chr16	18589800	18590000	+	575.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285472, intron 1 of 8)	intron (NM_001285472, intron 1 of 8)	771.0	NM_001285472	21380.0	Mm.295194	NM_011532	ENSMUSG00000009097	Tbx1	-	T-box 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-100662772-2	chr5	100662672	100662872	+	943.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027978, intron 3 of 6)	intron (NM_027978, intron 3 of 6)	11484.0	NM_027978	71883.0	Mm.260661	NM_027978	ENSMUSG00000029319	Coq2	2310002F18Rik|PHB:PPT	coenzyme Q2 4-hydroxybenzoate polyprenyltransferase	protein-coding	1.71731018829135	1.1974735577075	1.72195201337644	1.91659978041931	1.93146134351868	2.05499747927344	1.86818858781052	1.81294676543031	0.765020697585439	0.458776414789667	0.919607527898796
Merged-chr5-147072042-3	chr5	147071935	147072135	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080795, intron 1 of 9)	intron (NM_080795, intron 1 of 9)	4537.0	NM_080795	140887.0	Mm.272203	NM_080795	ENSMUSG00000016520	Lnx2	9630046H24|AW209022	ligand of numb-protein X 2	protein-coding	3.15731302787029	3.49439763419539	3.23690609393888	3.55931582483408	5.04570426355475	5.7066592933315	5.84808377392175	4.6286587332345	2.55727373494604	2.82607487362005e-09	4.0688695600432e-07
Merged-chr10-68467319-2	chr10	68467219	68467419	+	628.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_028491, intron 5 of 7)	intron (NM_028491, intron 5 of 7)	74556.0	NM_028491	73287.0	Mm.141830	NM_028491	ENSMUSG00000019945	Cabcoco1	1700040L02Rik	ciliary associated calcium binding coiled-coil 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-10280083-2	chr16	10279983	10280183	+	656.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MMERGLN-int|LTR|ERV1	33885.0	NM_007929	13731.0	Mm.246009	NM_007929	ENSMUSG00000022505	Emp2	XMP	epithelial membrane protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-38452863-3	chr15	38452774	38452974	+	897.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37673.0	NR_105916	102465574.0		NR_105916	ENSMUSG00000099110	Mir6951	Gm27765|mmu-mir-6951	microRNA 6951	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-10858080-4	chr8	10857982	10858182	+	981.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24372.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-21746045-2	chr14	21745945	21746145	+	813.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001007268, intron 3 of 7)	B4A|SINE|B4	2577.0	NM_001007268	27389.0	Mm.390674	NM_013849	ENSMUSG00000021768	Dusp13	DUSP13A|DUSP13B|Gm1203|LMW-DSP6|MDSP|TMDP|TS-DSP6	dual specificity phosphatase 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-63647690-1	chr9	63647590	63647790	+	544.0	f1_c57bl6.idr	3' UTR (NM_016769, exon 9 of 9)	3' UTR (NM_016769, exon 9 of 9)	45044.0	NR_151671	66939.0	Mm.34338	NM_025857	ENSMUSG00000037257	Aagab	2310007F21Rik|p34	alpha- and gamma-adaptin binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-48346441-4	chr17	48346349	48346549	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001272078)	promoter-TSS (NM_001272078)	48.0	NM_001272078	83433.0	Mm.261623	NM_031254	ENSMUSG00000023992	Trem2	TREM-2|Trem2a|Trem2b|Trem2c	triggering receptor expressed on myeloid cells 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-99059389-2	chr4	99059289	99059489	+	584.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026082, intron 12 of 47)	intron (NM_026082, intron 12 of 47)	28435.0	NM_013913	30924.0	Mm.28341	NM_013913	ENSMUSG00000028553	Angptl3	hypl	angiopoietin-like 3	protein-coding	0.358840670450922	0.030386665139799	0.0258736590340959	0.41187442560053	0.366817426592572	0.0314077314751966	0.0268666928548457	0.417380277679181	0.0348560535760958	0.986867547413466	1
Merged-chr9-75270396-2	chr9	75270296	75270496	+	929.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081322, intron 16 of 40)	ORR1D2|LTR|ERVL-MaLR	-35892.0	NM_010313	14697.0	Mm.17604	NM_010313	ENSMUSG00000032192	Gnb5	GBS|Gbeta5|flr	guanine nucleotide binding protein (G protein), beta 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150619140-2	chr4	150619040	150619240	+	571.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001085492, exon 22 of 23)	exon (NM_001085492, exon 22 of 23)	33034.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180904900-4	chr1	180904810	180905010	+	758.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133705, intron 2 of 6)	intron (NM_133705, intron 2 of 6)	636.0	NM_133705	69051.0	Mm.274180	NM_133705	ENSMUSG00000026520	Pycr2	1810018M05Rik|P5cr2	pyrroline-5-carboxylate reductase family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-135283526-4	chr1	135283444	135283644	+	956.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159624, intron 1 of 9)	CpG	540.0	NM_145417	215615.0	Mm.291048	NM_145417	ENSMUSG00000041926	Rnpep	-	arginyl aminopeptidase (aminopeptidase B)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115500590-4	chr5	115500481	115500681	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1E1|LTR|ERVL-MaLR	-6095.0	NM_011223	19303.0	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-66232722-4	chr14	66232607	66232807	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	-18883.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117281859-4	chr8	117281710	117281910	+	824.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	24791.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-149077838-2	chr4	149077738	149077938	+	678.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_019781, intron 1 of 8)	intron (NM_019781, intron 1 of 8)	21974.0	NM_019781	56273.0	Mm.184172	NM_019781	ENSMUSG00000028975	Pex14	Pex14p|R75137	peroxisomal biogenesis factor 14	protein-coding	0.0753969220690701	0.113996563652619	1.38703268789818	0.0920336967160233	0.0779152898888875	0.116711293465907	1.40597999102608	0.0937458192319581	0.0413660174825526	0.98997745679989	0.998431161219273
Merged-chr18-61895065-3	chr18	61894962	61895162	+	922.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198649, intron 1 of 22)	intron (NM_198649, intron 1 of 22)	16762.0	NM_198649	319713.0	Mm.329478	NM_198649	ENSMUSG00000032735	Ablim3	AW990719|D930036B08Rik	actin binding LIM protein family, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-77310082-4	chr5	77309992	77310192	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153798)	promoter-TSS (NM_153798)	-6.0	NM_019836	56412.0	Mm.129136	NM_019836	ENSMUSG00000036285	Noa1	2610024G14Rik|AU022345|AtNOS1|mAtNOS1	nitric oxide associated 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-77272228-2	chr10	77272128	77272328	+	794.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12928.0	NM_030262	80294.0	Mm.203556	NM_030262	ENSMUSG00000020260	Pofut2	2310011G23Rik|AI256847|BC003494|C21orf80|FUT13	protein O-fucosyltransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-85530728-2	chr7	85530628	85530828	+	563.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38360.0	NM_001105183	670940.0	Mm.469908	NM_001105183	ENSMUSG00000090806	Vmn2r70	EG620835	vomeronasal 2, receptor 70	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-86964211-1	chr17	86964111	86964311	+	685.166687	f0_balb.idr	intron (NM_145491, intron 1 of 4)	intron (NM_145491, intron 1 of 4)	1100.0	NM_145491	104215.0	Mm.826	NM_145491	ENSMUSG00000024143	Rhoq	Arhq|TC10A|Tc10	ras homolog family member Q	protein-coding	0.018549173799512	0.227399611285754	0.481675837611123	0.025571466214307	0.290189289663666	0.0365169518839155	0.0310094209915829	0.746368287628588	0.815426266278204	0.69735945770042	1
Merged-chr8-11480762-2	chr8	11480662	11480862	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_126558)	TTS (NR_126558)	-2263.0	NM_011227	19332.0	Mm.37632	NM_011227	ENSMUSG00000031504	Rab20	AA536966|D8Ertd350e	RAB20, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-35732441-4	chr3	35732321	35732521	+	924.537476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-21642.0	NR_151626	76295.0	Mm.239416	NM_029570	ENSMUSG00000037400	Atp11b	1110019I14Rik|ATPIF|ATPIR|mKIAA0956	ATPase, class VI, type 11B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-66986922-2	chr16	66986822	66987022	+	622.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178721, intron 1 of 9)	intron (NM_178721, intron 1 of 9)	329804.0	NR_040512	75501.0	Mm.394300	NR_040512	ENSMUSG00000092599	1700010K23Rik	-	RIKEN cDNA 1700010K23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-65951136-4	chr17	65951023	65951223	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023053)	promoter-TSS (NM_023053)	64.0	NM_023053	65960.0	Mm.10153	NM_023053	ENSMUSG00000024098	Twsg1	1810013J15Rik|9030422N06Rik|AW552143|D17Ertd403e|Tsg|Twg	twisted gastrulation BMP signaling modulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-75579519-2	chr3	75579419	75579619	+	659.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_009250, intron 1 of 8)	intron (NM_009250, intron 1 of 8)	22026.0	NM_001357514	20713.0	Mm.41560	NM_009250	ENSMUSG00000027834	Serpini1	AI837402|Ns|PI-12|PI12|Spi17	serine (or cysteine) peptidase inhibitor, clade I, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16948279-2	chr7	16948179	16948379	+	714.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001099636, exon 1 of 1)	3' UTR (NM_001099636, exon 1 of 1)	3597.0	NM_001099636	434128.0	Mm.483018	NM_001099636	ENSMUSG00000070802	Pnmal2	EG434128	PNMA-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-48197138-1	chr4	48197038	48197238	+	553.0	f1_c57bl6.idr	intron (NM_001355184, intron 9 of 10)	B3|SINE|B2	16077.0	NR_035484	100316708.0		NR_035484	ENSMUSG00000087844	Mir1958	mmu-mir-1958	microRNA 1958	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-165958348-4	chr1	165958239	165958439	+	723.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198932, intron 1 of 15)	intron (NM_198932, intron 1 of 15)	-23391.0	NM_198933	18986.0	Mm.245261	NM_011137	ENSMUSG00000026565	Pou2f1	2810482H01Rik|NF-A1|Oct-1|Oct1|Otf-1|Otf1	POU domain, class 2, transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-106553583-4	chr3	106553485	106553685	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286986, intron 2 of 8)	intron (NM_001286986, intron 2 of 8)	-5783.0	NM_133869	99712.0	Mm.429443	NM_133869	ENSMUSG00000040774	Cept1	9930118K05Rik|mCEPT1	choline/ethanolaminephosphotransferase 1	protein-coding	4.27759053355278	3.65045255966505	4.11400460903449	3.67441673474731	4.30941419305804	3.67747483799726	4.14414071388067	3.69319666217119	0.0385245851769456	0.933836070420441	0.998431161219273
Merged-chr7-12897778-4	chr7	12897700	12897900	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001001447)	promoter-TSS (NM_001001447)	-9.0	NM_001290438	232878.0	Mm.40706	NM_001001447	ENSMUSG00000054715	Zscan22	AW227621|D530006B18Rik|Hkr2	zinc finger and SCAN domain containing 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70706103-2	chr8	70706013	70706213	+	721.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M5|LINE|L1	8374.0	NM_001286944	16478.0	Mm.419851	NM_010592	ENSMUSG00000071076	Jund	Jund1	jun D proto-oncogene	protein-coding	-0.511894420598011	-0.632360664019282	-0.473917550300294	-0.24900565225095	-0.393764241927667	-0.631717389181325	-0.634576684395897	-0.636999106334898	-1.33178607885503	0.606277655333574	1
Merged-chr17-13857091-2	chr17	13856991	13857191	+	642.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_151731, intron 20 of 33)	intron (NR_151731, intron 20 of 33)	-91282.0	NM_001122977	635895.0	Mm.388844	NM_001122977	ENSMUSG00000067941	Gm7168	EG635895	predicted gene 7168	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118673867-2	chr9	118673769	118673969	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 11 of 27)	RSINE1|SINE|B4	-37823.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	4.56945448927421	2.79829642379885	3.43830030964343	2.42925155432659	4.34428991407449	3.76905362915265	4.17590128467739	3.75350416998606	0.611294594077626	0.308559137784724	0.809295017856989
Merged-chr9-57647574-2	chr9	57647474	57647674	+	824.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001304761, intron 2 of 14)	MIRb|SINE|MIR	-1921.0	NM_007783	12988.0	Mm.21974	NM_007783	ENSMUSG00000032312	Csk	AW212630|p50CSK	c-src tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-53330269-4	chr19	53330182	53330382	+	999.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001008543)	promoter-TSS (NM_001008543)	-126.0	NM_001008543	17859.0	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-149182891-2	chr4	149182791	149182991	+	763.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_207682, intron 43 of 46)	B2_Mm2|SINE|B2	-16186.0	NM_001081274	110208.0	Mm.252080	NM_025801	ENSMUSG00000028961	Pgd	0610042A05Rik|AU019875|C78335	phosphogluconate dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-10287038-2	chr3	10286938	10287138	+	912.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029310, intron 1 of 5)	RLTR20A3_MM|LTR|ERVK	14145.0	NM_001357159	75497.0	Mm.47052	NM_029310	ENSMUSG00000027530	Fabp12	1700008G05Rik	fatty acid binding protein 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-79554422-4	chr10	79554322	79554522	+	853.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316699, intron 1 of 13)	intron (NM_001316699, intron 1 of 13)	706.0	NM_001316699	70427.0	Mm.334193	NM_027422	ENSMUSG00000042570	Mier2	2700087H15Rik|mKIAA1193	MIER family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-132203994-3	chr2	132203892	132204092	+	830.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE-int|LTR|ERVL-MaLR	43796.0	NM_027478	70612.0	Mm.30116	NM_027478	ENSMUSG00000027341	Tmem230	5730494N06Rik|AA407821	transmembrane protein 230	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-107762940-4	chr13	107762850	107763050	+	865.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 5 of 14)	intron (NM_145456, intron 5 of 14)	75553.0	NR_045900	72257.0	Mm.234155	NR_045900	ENSMUSG00000102000	1700006H21Rik	-	RIKEN cDNA 1700006H21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-27023763-4	chr8	27023674	27023874	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153592)	promoter-TSS (NM_153592)	-25.0	NM_153592	244373.0	Mm.277699	NM_153592	ENSMUSG00000031483	Erlin2	BC036333|C87251|Spfh2	ER lipid raft associated 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75106799-4	chr11	75106690	75106890	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001002764, intron 13 of 18)	L2a|LINE|L2	-40799.0	NR_030454	735274.0		NR_030454	ENSMUSG00000106252	Mir684-1	Mirn684-1	microRNA 684-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-45612329-4	chr4	45612234	45612434	+	824.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27602.0	NR_151513	100040557.0	Mm.383510	NR_151513	ENSMUSG00000085980	Gm12408	-	predicted gene 12408	ncRNA	3.31515875561548	3.11073409278013	2.56271478467003	3.30414220909222	2.09448008555368	3.13337895320512	2.08403893916326	2.74042647808219	-0.968067407400542	0.176887155458909	0.646570188136342
Merged-chr11-85842140-4	chr11	85842020	85842220	+	889.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009324)	TTS (NM_009324)	9505.0	NM_009324	21385.0	Mm.287052	NM_009324	ENSMUSG00000000093	Tbx2	-	T-box 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-71736538-2	chr6	71736438	71736638	+	625.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178608, intron 1 of 6)	B1F1|SINE|Alu	28857.0	NM_178608	52250.0	Mm.146332	NM_178608	ENSMUSG00000052852	Reep1	D6Ertd253e	receptor accessory protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-57864543-2	chr9	57864448	57864648	+	731.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	-30314.0	NM_019689	56380.0	Mm.425588	NM_019689	ENSMUSG00000004661	Arid3b	Bdp|Dri2	AT rich interactive domain 3B (BRIGHT-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-164007767-3	chr1	164007701	164007901	+	824.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	12912.0	NM_001355132	69962.0	Mm.27284	NM_027279	ENSMUSG00000041396	Mettl18	2810422O20Rik|C78571	methyltransferase like 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-12232590-2	chr15	12232490	12232690	+	759.099976	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356498, intron 2 of 15)	intron (NM_001356498, intron 2 of 15)	27562.0	NM_172958	268783.0	Mm.54460	NM_172958	ENSMUSG00000039458	Mtmr12	3Pap|4932703C11|C730015A02Rik|Pip3ap|mKIAA1682	myotubularin related protein 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-124936994-4	chr4	124936906	124937106	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177573)	promoter-TSS (NM_177573)	-42.0	NM_177573	194268.0	Mm.266907	NM_177573	ENSMUSG00000044730	9930104L06Rik	C1orf109	RIKEN cDNA 9930104L06 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-91411717-2	chr1	91411617	91411817	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_019479, exon 4 of 4)	3' UTR (NM_019479, exon 4 of 4)	1505.0	NM_019479	55927.0	Mm.280029	NM_019479	ENSMUSG00000067071	Hes6	AI326893|bHLHb41	hairy and enhancer of split 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-40045983-2	chr1	40045883	40046083	+	633.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38731.0	NM_010555	16178.0	Mm.1349	NM_010555	ENSMUSG00000026073	Il1r2	CD121b|Il1r-2	interleukin 1 receptor, type II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-83738323-4	chr8	83738223	83738423	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011925, intron 1 of 19)	intron (NM_011925, intron 1 of 19)	2988.0	NM_001163029	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	6.77886659787421	6.13239893166566	6.69755406762847	6.40675022209173	6.36823667794646	6.5355727800139	6.57116004188555	6.68207709869759	0.00952530473118478	0.963305839917165	0.998431161219273
Merged-chr17-57484331-2	chr17	57484231	57484431	+	726.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001355723)	TTS (NM_001355723)	60983.0	NM_001104591	224916.0	Mm.469889	NM_001104591	ENSMUSG00000090655	Vmn2r120	EG224916	vomeronasal 2, receptor 120	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-23846113-4	chr11	23845987	23846187	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49183.0	NM_172555	216578.0	Mm.470599	NM_172555	ENSMUSG00000020273	Papolg	9630006B20Rik	poly(A) polymerase gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-16344119-2	chr19	16344019	16344219	+	561.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008139, intron 5 of 6)	(CA)n|Simple_repeat|Simple_repeat	-29115.0	NR_105832	102465218.0		NR_105832	ENSMUSG00000098718	Mir496b	Gm28028|mmu-mir-496b	microRNA 496b	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-104341420-4	chr8	104341315	104341515	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024217, intron 1 of 4)	intron (NM_024217, intron 1 of 4)	821.0	NM_024217	68119.0	Mm.390108	NM_024217	ENSMUSG00000031875	Cmtm3	9430096L06Rik|AI413895|BNAS2|Cklfsf3	CKLF-like MARVEL transmembrane domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-94986658-2	chr6	94986558	94986758	+	790.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42824.0	NR_040761	78773.0	Mm.67065	NR_040761	ENSMUSG00000108187	4930511E03Rik	-	RIKEN cDNA 4930511E03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-34152093-1	chr10	34151993	34152193	+	625.0	f0_balb.idr	3' UTR (NM_172508, exon 6 of 6)	3' UTR (NM_172508, exon 6 of 6)	-24121.0	NM_175449	215900.0	Mm.34479	NM_175449	ENSMUSG00000046031	Fam26f	A630077B13Rik|Calhm6	family with sequence similarity 26, member F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-120111854-2	chr10	120111754	120111954	+	908.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_080446, intron 1 of 12)	B2_Mm2|SINE|B2	1111.0	NM_080446	117599.0	Mm.214703	NM_080446	ENSMUSG00000020228	Helb	AI447783|D10Ertd664e	helicase (DNA) B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-34835824-4	chr1	34835715	34835915	+	946.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160236, intron 2 of 6)	intron (NM_001160236, intron 2 of 6)	7235.0	NM_174997	214469.0	Mm.120151	NM_174997	ENSMUSG00000037503	Fam168b	Mani|mKIAA4042	family with sequence similarity 168, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-120120565-1	chr1	120120465	120120665	+	1000.0	f1_c57bl6.idr	promoter-TSS (NM_001172074)	promoter-TSS (NM_001172074)	354.0	NM_001037999	13167.0	Mm.2785	NM_007830	ENSMUSG00000026385	Dbi	ACBD1|Acbp|EP|endozepine	diazepam binding inhibitor	protein-coding	1.34995523927245	0.903532204373494	0.884035638965952	0.86857465201726	1.4886084359697	2.04925727588068	2.14739352439027	1.69435777889073	3.29198796352056	0.0157265073490053	0.150148516053076
Merged-chr18-37935576-4	chr18	37935486	37935686	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001305981)	promoter-TSS (NM_001305981)	-110.0	NM_001305980	13367.0	Mm.195916	NM_007858	ENSMUSG00000024456	Diaph1	D18Wsu154e|Dia1|Diap1|Drf1|p140mDia	diaphanous related formin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-134094028-4	chr1	134093929	134094129	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14874.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-89354245-2	chr6	89354145	89354345	+	608.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008881, intron 3 of 31)	intron (NM_008881, intron 3 of 31)	8368.0	NM_008881	18844.0	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-131300090-4	chr3	131300000	131300200	+	912.758301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027816, intron 1 of 4)	L1M5|LINE|L1	3127.0	NM_027816	71519.0	Mm.473179	NM_027816	ENSMUSG00000027983	Cyp2u1	8430436A10Rik	cytochrome P450, family 2, subfamily u, polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75165917-2	chr11	75165817	75166017	+	932.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001098203, exon 2 of 2)	exon (NM_001098203, exon 2 of 2)	2235.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-17850801-2	chr5	17850701	17850901	+	718.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159558, intron 1 of 15)	RMER1A|Other|Other	-1009.0	NM_001159556	12491.0	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 molecule	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-140066796-4	chr2	140066687	140066887	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_110350)	promoter-TSS (NR_110350)	18.0	NM_001159640	75812.0	Mm.293449	NM_175225	ENSMUSG00000039033	Tasp1	4930485D02Rik|AW986064	taspase, threonine aspartase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98907641-4	chr11	98907518	98907718	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011799)	promoter-TSS (NM_011799)	-271.0	NM_001025779	23834.0	Mm.20912	NM_011799	ENSMUSG00000017499	Cdc6	CDC18L	cell division cycle 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-55146887-4	chr18	55146782	55146982	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-154291.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-44355275-3	chr12	44355165	44355365	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146031, intron 1 of 27)	intron (NM_001146031, intron 1 of 27)	26380.0	NM_001146031	319504.0	Mm.208439	NM_176930	ENSMUSG00000020598	Nrcam	Bravo|C030017F07Rik|C130076O07Rik|mKIAA0343	neuronal cell adhesion molecule	protein-coding	1.86508102586432	1.21738387574855	1.17969984859831	1.14911400053228	2.72831788473867	2.83884977338074	2.89732602085639	2.64841079068037	3.64439824115235	0.00065390092745906	0.0138613132997417
Merged-chr2-6717165-4	chr2	6717074	6717274	+	893.19165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110232, intron 4 of 15)	intron (NM_001110232, intron 4 of 15)	4488.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10863136-2	chr19	10863036	10863236	+	953.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133804, intron 7 of 10)	intron (NM_133804, intron 7 of 10)	6643.0	NM_133804	98170.0	Mm.490254	NM_133804	ENSMUSG00000024736	Tmem132a	6720481D13Rik|Hspa5bp1|Orai1|R74613	transmembrane protein 132A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-77061659-3	chr5	77061555	77061755	+	662.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_027970)	TTS (NM_027970)	33612.0	NM_001159901	74318.0	Mm.181852	NM_175606	ENSMUSG00000059325	Hopx	1110018K11Rik|1200015P04Rik|2300002F06Rik|AI848177|AW490897|Cameo|Hdop|Hod|Hop|Ob1|Obl|Toto	HOP homeobox	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124508578-4	chr6	124508490	124508690	+	830.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_181344, exon 6 of 6)	exon (NM_181344, exon 6 of 6)	-4031.0	NM_023143	50909.0	Mm.333375	NM_023143	ENSMUSG00000055172	C1ra	AI132558|C1r|mC1rA	complement component 1, r subcomponent A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-87724502-3	chr6	87724467	87724667	+	693.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-6302.0	NM_001159697	58229.0	Mm.333229	NM_021418	ENSMUSG00000068263	Efcc1	Ccdc48	EF hand and coiled-coil domain containing 1	protein-coding	-0.930827705715312	-0.911723555512999	-0.922254349429052	-0.92545661009902	-0.930024306940492	-0.908568608235052	-0.921343426646148	0.0793975079163189	3.42135586619611	0.266698239593473	1
Merged-chr8-100059849-2	chr8	100059749	100059949	+	811.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR34B_MM|LTR|ERVK	643175.0	NR_132435	234624.0	Mm.124595	NM_175479	ENSMUSG00000052479	A330008L17Rik	-	RIKEN cDNA A330008L17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-58882496-4	chr15	58882406	58882606	+	893.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4A|LINE|L1	-6723.0	NM_175226	75841.0	Mm.4537	NM_175226	ENSMUSG00000037075	Rnf139	4930555P18Rik	ring finger protein 139	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-22073601-4	chr14	22073497	22073697	+	762.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028275, intron 2 of 6)	intron (NM_028275, intron 2 of 6)	53885.0	NM_028275	76633.0	Mm.489898	NM_028275	ENSMUSG00000063458	Lrmda	1700112E06Rik|2700009F18Rik	leucine rich melanocyte differentiation associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-63356844-2	chr13	63356750	63356950	+	681.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007985, intron 6 of 14)	intron (NM_007985, intron 6 of 14)	-55567.0	NR_037235	100526474.0		NR_037235	ENSMUSG00000092741	Mir3074-1	mmu-mir-3074-1	microRNA 3074-1	ncRNA	0.957740883783675	0.200524920996319	0.192751941157978	0.186708139997151	0.178094010883328	0.994819647364757	0.701285514337158	0.187767006909727	0.698370397417178	0.735662473532501	1
Merged-chr6-54866946-4	chr6	54866852	54867052	+	821.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199143, intron 2 of 4)	intron (NM_199143, intron 2 of 4)	50036.0	NM_199143	387524.0	Mm.286149	NM_199143	ENSMUSG00000058446	Znrf2	1190002C14Rik|AU044205|D6Ertd365e	zinc and ring finger 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-118700345-4	chr2	118700253	118700453	+	935.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001081971, exon 1 of 1)	3' UTR (NM_001081971, exon 1 of 1)	3610.0	NM_001081971	383787.0	Mm.35758	NM_001081971	ENSMUSG00000078137	Ankrd63	Gm1337	ankyrin repeat domain 63	protein-coding	0.458900547375703	0.599102013117436	0.0724772052167955	0.0673741704222209	0.967969746046752	0.0805395269099648	0.0739321118309904	0.0682672140500192	0.33732830525388	0.875935984105423	1
Merged-chr8-105272588-2	chr8	105272488	105272688	+	722.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045689, intron 8 of 12)	intron (NR_045689, intron 8 of 12)	2787.0	NM_001256044	26386.0	Mm.89204	NM_011939	ENSMUSG00000033249	Hsf4	HSF 4|HSTF 4|HSTF4|ldis1|mHSF4	heat shock transcription factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-43854318-4	chr5	43854201	43854401	+	996.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14508.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-11659704-1	chr18	11659604	11659804	+	567.0	f1_c57bl6.idr	intron (NM_001081223, intron 1 of 18)	ID_B1|SINE|B4	2355.0	NM_001081223	225182.0	Mm.154275	NM_175458	ENSMUSG00000041238	Rbbp8	9930104E21Rik|CtIP|RBBP-8|RIM|SAE2	retinoblastoma binding protein 8, endonuclease	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-99458999-2	chr5	99458899	99459099	+	554.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 2 of 3)	intron (NR_030692, intron 2 of 3)	-206072.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-11999470-4	chr19	11999355	11999555	+	927.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	33611.0	NM_001033174	76303.0	Mm.291279	NM_001033174	ENSMUSG00000024687	Osbp	1110018F06Rik|AW559088|mKIAA4220	oxysterol binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45238995-4	chr7	45238912	45239112	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007645)	promoter-TSS (NM_007645)	103.0	NM_001290802	12493.0	Mm.3689	NM_007645	ENSMUSG00000030798	Cd37	Tspan26	CD37 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56183496-1	chr17	56183396	56183596	+	729.0	f0_balb.idr	intron (NM_080837, intron 1 of 5)	intron (NM_080837, intron 1 of 5)	424.0	NM_080837	28106.0	Mm.294870	NM_080837	ENSMUSG00000019579	Mydgf	D17Wsu104e|Il25|Ly6elg	myeloid derived growth factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-83862369-4	chr17	83862269	83862469	+	887.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7951.0	NR_155491	320021.0	Mm.379475	NR_155490		C430042M11Rik	-	RIKEN cDNA C430042M11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-89262527-4	chr6	89262452	89262652	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23173.0	NR_131021	75131.0	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	Gm44205	RIKEN cDNA 4930512J16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-150749002-4	chr2	150748881	150749081	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172117)	promoter-TSS (NM_172117)	-100.0	NM_001355068	12497.0	Mm.275524	NM_172117	ENSMUSG00000033068	Entpd6	2700026H11Rik|Cd39l2|NTPDase-6	ectonucleoside triphosphate diphosphohydrolase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-75978410-3	chr5	75978338	75978538	+	953.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010612)	promoter-TSS (NM_010612)	-10.0	NM_010612	16542.0	Mm.285	NM_010612	ENSMUSG00000062960	Kdr	6130401C07|Flk-1|Flk1|Krd-1|Ly73|VEGFR-2|VEGFR2|orv|sVEGFR-2	kinase insert domain protein receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-148311039-4	chr5	148310962	148311162	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359511, intron 6 of 6)	MuRRS-int|LTR|ERV1	45845.0	NM_001359505	77521.0	Mm.244177	NM_029920	ENSMUSG00000029651	Mtus2	5730592G18Rik|A730013O20Rik|AU067634|C130038G02Rik|Cazip|Gm763|mKIAA0774	microtubule associated tumor suppressor candidate 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-73402284-4	chr14	73402304	73402504	+	920.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-17115.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-121593264-2	chr5	121593164	121593364	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009656, intron 1 of 12)	CpG	560.0	NM_009656	11669.0	Mm.284446	NM_009656	ENSMUSG00000029455	Aldh2	AHD-M1|ALDH-E2|ALDHI|Ahd-5|Ahd5	aldehyde dehydrogenase 2, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-64604706-2	chr17	64604606	64604806	+	938.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008549, intron 1 of 21)	intron (NM_008549, intron 1 of 21)	3057.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-82529420-2	chr18	82529320	82529520	+	878.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025245, intron 3 of 3)	intron (NM_001025245, intron 3 of 3)	-25043.0	NM_001025258	17196.0	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-23887529-3	chr18	23887444	23887644	+	824.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162941, intron 7 of 7)	L2c|LINE|L2	-67144.0	NM_027007	69256.0	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-99387065-3	chr5	99386965	99387165	+	839.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 2 of 3)	intron (NR_030692, intron 2 of 3)	-134138.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-65226438-4	chr13	65226355	65226555	+	870.2291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	-20739.0	NM_175290	97895.0	Mm.315815	NM_175290	ENSMUSG00000032999	Nlrp4f	C330026N02Rik|C86045|Nalp-kappa|Nalp4f	NLR family, pyrin domain containing 4F	protein-coding	-1.84354474832578	-1.81325489144778	-1.53416061964661	-1.82993901100912	-1.8414184563789	-1.81126990231468	-1.82034119297928	-1.82859217979378	-1.52252619601533	0.665276690233728	1
Merged-chr5-135912627-4	chr5	135912537	135912737	+	812.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018871, intron 1 of 1)	B1_Mur2|SINE|Alu	22004.0	NM_018871	22628.0	Mm.233813	NM_018871	ENSMUSG00000051391	Ywhag	14-3-3gamma|D7Bwg1348e	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-59802803-2	chr4	59802703	59802903	+	923.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER5|LTR|ERV1	-2847.0	NM_172468	209131.0	Mm.259705	NM_172468	ENSMUSG00000028385	Snx30	4732481H14Rik|C030041J06Rik	sorting nexin family member 30	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21600300-2	chr9	21600200	21600400	+	909.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7469.0	NM_138303	74766.0	Mm.475712	NM_138303	ENSMUSG00000032182	Yipf2	1300010K09Rik	Yip1 domain family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5733560-3	chr17	5733429	5733629	+	898.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 8 of 8)	intron (NM_146073, intron 8 of 8)	-65128.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-46830548-4	chr11	46830443	46830643	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178759, intron 5 of 8)	MLTR14|LTR|ERV1	19744.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	-0.871559037381726	-0.856638476330222	-0.861583137644455	-0.865283896969569	-0.870614807574855	-0.855415350575532	0.207976872237578	-0.86463319879494	3.89850570063307	0.158045432396183	1
Merged-chr17-33943546-5	chr17	33943433	33943633	+	948.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020603, intron 7 of 14)	intron (NM_020603, intron 7 of 14)	2810.0	NM_020603	57315.0	Mm.2437	NM_020603	ENSMUSG00000024312	Wdr46	2310007I04Rik|Bing4|C78447|C78559	WD repeat domain 46	protein-coding	3.75359680547347	3.15458508579419	4.37605060846638	4.26598967211709	2.69143272615023	2.56274721690425	3.47470365615816	2.96650695990082	-1.52788980522872	0.00853027699242565	0.0972257093303891
Merged-chr2-120096409-3	chr2	120096307	120096507	+	913.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133838, intron 5 of 5)	intron (NM_133838, intron 5 of 5)	58168.0	NM_133838	98878.0	Mm.132226	NM_133838	ENSMUSG00000027293	Ehd4	2210022F10Rik|AI197390|AI846352|AV006278|Past2	EH-domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-40301276-4	chr4	40301171	40301371	+	992.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11961.0	NR_040663	75819.0	Mm.399244	NR_040663	ENSMUSG00000087137	4930509K18Rik	-	RIKEN cDNA 4930509K18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-13151005-1	chr8	13150905	13151105	+	543.0	f1_balb.idr	Intergenic	Intergenic	-8156.0	NM_001317353	16783.0	Mm.16716	NM_010684	ENSMUSG00000031447	Lamp1	CD107a|LGP-120|LGP-A|Lamp-1|P2B|Perk	lysosomal-associated membrane protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-11451635-4	chr8	11451569	11451769	+	871.525024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26260.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-42615278-3	chr10	42615173	42615373	+	933.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-31685.0	NM_152229	21907.0	Mm.287100	NM_152229	ENSMUSG00000019803	Nr2e1	Mtl1|Mtll|TLL|Tlx|XTLL|fierce|frc|tailless	nuclear receptor subfamily 2, group E, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-174110512-10	chr2	174110417	174110617	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_213733, exon 1 of 12)	exon (NM_213733, exon 1 of 12)	166.0	NM_213733	228961.0	Mm.295629	NM_213733	ENSMUSG00000039263	Npepl1	BC023239|C85514|mKIAA1974	aminopeptidase-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117640075-2	chr10	117639975	117640175	+	692.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_027468, intron 2 of 8)	intron (NM_027468, intron 2 of 8)	10575.0	NM_027468	70574.0	Mm.339332	NM_027468	ENSMUSG00000020183	Cpm	1110060I01Rik|5730456K23Rik|AA589379|E030045M14Rik	carboxypeptidase M	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-114312046-1	chr10	114311946	114312146	+	779.0	f1_c57bl6.idr	Intergenic	Lx3_Mus|LINE|L1	489324.0	NM_146241	237553.0	Mm.445550	NM_146241	ENSMUSG00000050663	Trhde	9330155P21Rik	TRH-degrading enzyme	protein-coding	-0.578564498018089	-0.339428504422498	-0.568101554311231	0.480782354454844	-0.577584562455415	-0.561948785728063	-0.566989045929519	-0.571326125454056	-3.71251942122469	0.157608388931322	1
Merged-chr6-145779545-3	chr6	145779441	145779641	+	796.25	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28842.0	NM_027760	71323.0	Mm.158669	NM_027760	ENSMUSG00000030259	Rassf8	5133400D11Rik|AA815821|AW123240|Hoj1|mHoj-1	Ras association (RalGDS/AF-6) domain family (N-terminal) member 8	protein-coding	3.56065018380647	3.40835738052612	4.2536124958996	5.00199209258629	2.40800391871951	3.07090015625709	2.65236954436975	3.63461315375364	-1.7332189506557	0.00402658925911356	0.0563941843550714
Merged-chr19-4398258-1	chr19	4398158	4398358	+	788.200012	f0_balb.idr	Intergenic	CpG	-1181.0	NM_001001984	225876.0	Mm.31941	NM_001001984	ENSMUSG00000054611	Kdm2a	100043628|5530401A10Rik|AA589516|AW536790|Cxxc8|Fbl11|Fbl7|Fbxl11|Gm4560|Jhdm1|Jhdm1a|lalina	lysine (K)-specific demethylase 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36286969-4	chr18	36286884	36287084	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008989, intron 1 of 1)	intron (NM_008989, intron 1 of 1)	5822.0	NM_008989	19290.0	Mm.231802	NM_008989	ENSMUSG00000043991	Pura	CAGER-1|Pur-alpha|ssCRE-BP	purine rich element binding protein A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-55404074-2	chr13	55403976	55404176	+	764.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_011392, intron 8 of 12)	intron (NM_011392, intron 8 of 12)	4428.0	NM_011392	20505.0	Mm.276355	NM_011392	ENSMUSG00000021490	Slc34a1	NaPi-IIa|Npt2|Npt2a|Slc17a2	solute carrier family 34 (sodium phosphate), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91820472-4	chr16	91820417	91820617	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010587, exon 13 of 39)	exon (NM_010587, exon 13 of 39)	91146.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-124784802-2	chr10	124784702	124784902	+	741.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	315728.0	NR_028310	75030.0	Mm.159403	NR_028310	ENSMUSG00000112364	4930503E24Rik	-	eukaryotic translation initiation factor 3, subunit I pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-86831772-2	chr12	86831672	86831872	+	853.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53042.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-63264589-2	chr14	63264489	63264689	+	547.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19318.0	NM_001310610	14463.0	Mm.247669	NM_008092	ENSMUSG00000021944	Gata4	Gata-4	GATA binding protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-17828045-6	chr17	17827935	17828135	+	898.033325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2153.0	NR_029536	387230.0		NR_029536	ENSMUSG00000065396	Mir99b	Mirn99b|mmu-mir-99b	microRNA 99b	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-80185369-4	chr11	80185347	80185547	+	929.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028019, intron 1 of 4)	L1MB7|LINE|L1	1575.0	NM_028019	71956.0	Mm.22985	NM_028019	ENSMUSG00000020707	Rnf135	0610037N03Rik|2410006N06Rik	ring finger protein 135	protein-coding	3.47819970143661	3.90325559133335	4.67267548865095	3.41654777999153	4.04566664215556	4.14765842676183	4.1408707620418	3.60840857402872	0.046211121531058	0.925387501246059	0.998431161219273
Merged-chr9-62969263-2	chr9	62969163	62969363	+	585.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019663, intron 1 of 13)	intron (NM_019663, intron 1 of 13)	11616.0	NM_019663	56469.0	Mm.431253	NM_019663	ENSMUSG00000032405	Pias1	2900068C24Rik|Ddxbp1|GBP	protein inhibitor of activated STAT 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-108831780-4	chr9	108831663	108831863	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001359573, exon 2 of 36)	exon (NM_001359573, exon 2 of 36)	5718.0	NM_001359572	107934.0	Mm.39945	NM_080437	ENSMUSG00000023473	Celsr3	Adgrc3|Fmi1|flamingo|mKIAA0812	cadherin, EGF LAG seven-pass G-type receptor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-27237862-4	chr14	27237768	27237968	+	896.4213869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027871)	promoter-TSS (NM_027871)	-142.0	NM_027871	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-50948261-4	chr9	50948164	50948364	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178710, intron 3 of 15)	intron (NM_178710, intron 3 of 15)	60809.0	NM_178710	235344.0	Mm.104932	NM_178710	ENSMUSG00000037112	Sik2	G630080D20Rik|Snf1lk2	salt inducible kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-10456687-2	chr10	10456587	10456787	+	930.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001127353, intron 1 of 36)	intron (NM_001127353, intron 1 of 36)	15627.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124933688-2	chr6	124933588	124933788	+	645.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145385, intron 4 of 8)	B1_Mus2|SINE|Alu	2300.0	NM_001170341	30853.0	Mm.29737	NM_145385	ENSMUSG00000030120	Mlf2	AI256856|AU018944|C77284	myeloid leukemia factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56008472-4	chr17	56008359	56008559	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026530)	promoter-TSS (NM_026530)	-323.0	NM_145934	106766.0	Mm.204991	NM_145934	ENSMUSG00000038781	Stap2	AW049765|STAP-2	signal transducing adaptor family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122333321-3	chr8	122333219	122333419	+	790.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009569, intron 5 of 9)	intron (NM_009569, intron 5 of 9)	29509.0	NM_133202	170732.0	Mm.154808	NM_133202	ENSMUSG00000039079	Trhr2	TRH-R2	thyrotropin releasing hormone receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98706791-2	chr11	98706691	98706891	+	635.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361995, intron 22 of 25)	intron (NM_001361995, intron 22 of 25)	5478.0	NM_009971	12985.0	Mm.1238	NM_009971	ENSMUSG00000038067	Csf3	Csfg|G-CSF|MGI-IG	colony stimulating factor 3 (granulocyte)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-125350410-2	chr5	125350310	125350510	+	635.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-9316.0	NM_001205083	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-85430221-4	chr13	85430123	85430323	+	925.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-140737.0	NM_145452	218397.0	Mm.259653	NM_145452	ENSMUSG00000021549	Rasa1	Gap|RasGAP|Rasa	RAS p21 protein activator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91335399-4	chr2	91335297	91335497	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175123, intron 3 of 8)	intron (NM_175123, intron 3 of 8)	70282.0	NM_023854	77038.0	Mm.43636	NM_023854	ENSMUSG00000027255	Arfgap2	2310032E02Rik|Zfp289	ADP-ribosylation factor GTPase activating protein 2	protein-coding	4.24772192643474	5.29050801301434	4.38264355630992	5.26229027505808	3.72104433147527	2.97386951203504	4.56850229215658	4.0510657155707	-1.18075650736095	0.0112297181208674	0.117980873917835
Merged-chr7-123084978-4	chr7	123084879	123085079	+	760.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38906.0	NM_144925	233833.0	Mm.102305	NM_144925	ENSMUSG00000052707	Tnrc6a	2010321I05Rik|3110054G10Rik|AW557223|CAGH26|D130023A07Rik|GW182|Tnrc6	trinucleotide repeat containing 6a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-36849080-2	chr17	36848969	36849169	+	769.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025599, intron 2 of 9)	intron (NM_001025599, intron 2 of 9)	11923.0	NM_001286726	22670.0	Mm.34587	NM_030698	ENSMUSG00000024457	Trim26	AI462198|Zfp173|Zfp1736	tripartite motif-containing 26	protein-coding	0.292097708121173	-0.0726535301934483	-0.0779830055822162	-0.0820991804598221	0.30075357196653	-0.0714530046819773	0.70679607119978	-0.0813798064233754	1.83795254934174	0.424205639913201	1
Merged-chr8-25109478-3	chr8	25109398	25109598	+	913.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_155282)	TTS (NR_155282)	7319.0	NR_155282	74744.0	Mm.117802	NR_155282		5830408C22Rik	2700026D01Rik	RIKEN cDNA 5830408C22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-36217115-4	chr12	36216989	36217189	+	762.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361098, intron 5 of 8)	intron (NM_001361098, intron 5 of 8)	1129.0	NM_027699	71156.0	Mm.250837	NM_027699	ENSMUSG00000020545	Lrrc72	1700108M19Rik|4933421E18Rik	leucine rich repeat containing 72	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-35464723-3	chr2	35464616	35464816	+	711.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3267.0	NM_001145821	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-56387955-4	chr19	56387867	56388067	+	946.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198059, intron 3 of 40)	intron (NM_198059, intron 3 of 40)	2071.0	NM_198059	18175.0	Mm.386769	NM_008733	ENSMUSG00000049134	Nrap	-	nebulin-related anchoring protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-93575495-3	chr1	93575382	93575582	+	923.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145519, intron 9 of 26)	intron (NM_145519, intron 9 of 26)	60245.0	NM_021537	59041.0	Mm.28761	NM_021537	ENSMUSG00000026277	Stk25	1500019J11Rik|AU018434|C86992|Ste20-like|Ysk1	serine/threonine kinase 25 (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-6596215-1	chr11	6596115	6596315	+	542.0	f1_balb.idr	exon (NM_001190344, exon 10 of 10)	exon (NM_001190344, exon 10 of 10)	9839.0	NM_001081652	192950.0	Mm.337771	NM_001081652	ENSMUSG00000041073	Nacad	D230024G13Rik|mKIAA0363	NAC alpha domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-85091951-2	chr17	85091851	85092051	+	608.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028576, intron 1 of 10)	MTE2b|LTR|ERVL-MaLR	1251.0	NM_028576	73582.0	Mm.260753	NM_028576	ENSMUSG00000071037	Camkmt	1700106N22Rik|AI480743|AV099781|CLNMT|CaM KMT	calmodulin-lysine N-methyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31190427-2	chr14	31190327	31190527	+	855.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347583, intron 6 of 13)	intron (NM_001347583, intron 6 of 13)	16399.0	NM_022656	64652.0	Mm.298728	NM_022656	ENSMUSG00000021910	Nisch	1200007D05Rik|3202002H23Rik|AW494485|I-1|edsn	nischarin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88654867-3	chr3	88654772	88654972	+	861.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1730.0	NM_181817	242093.0	Mm.269130	NM_181817	ENSMUSG00000049741	Rxfp4	GPCR142|Gpr100|Rln3r2|SALPR	relaxin family peptide receptor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-29466604-4	chr2	29466503	29466703	+	865.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290489, intron 2 of 6)	L1MA8|LINE|L1	8691.0	NR_105753	102465170.0		NR_105753	ENSMUSG00000098539	Mir133c	Gm27865|mmu-mir-133c	microRNA 133c	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-60690644-2	chr18	60690544	60690744	+	695.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001348100, intron 13 of 14)	intron (NM_001348100, intron 13 of 14)	27234.0	NR_045401	328963.0	Mm.417203	NR_045401		G630071F17Rik	G630071F17	RIKEN cDNA G630071F17 gene	ncRNA	0.979077218690836	1.13843049539048	0.552951332710728	1.46997690973596	0.530080972432325	0.567589490914855	0.555609023196472	1.56334626589799	-0.690281589854384	0.680364369687177	0.995506882643648
Merged-chr6-113330805-4	chr6	113330754	113330954	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010957, intron 3 of 6)	ORR1A4|LTR|ERVL-MaLR	3878.0	NM_010957	18294.0	Mm.43612	NM_010957	ENSMUSG00000030271	Ogg1	Mmh	8-oxoguanine DNA-glycosylase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-56633896-3	chr13	56633774	56633974	+	708.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155548, intron 12 of 16)	intron (NR_155548, intron 12 of 16)	24288.0	NR_155548	21810.0	Mm.14455	NM_009369	ENSMUSG00000035493	Tgfbi	68kDa|AI181842|AI747162|Beta-ig|big-h3	transforming growth factor, beta induced	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-21400116-4	chr16	21400026	21400226	+	933.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22992.0	NM_001285893	209018.0	Mm.235683	NM_145948	ENSMUSG00000033653	Vps8	AI315068|AU040738|mKIAA0804	VPS8 CORVET complex subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-33159041-2	chr19	33158941	33159141	+	900.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001146342, intron 4 of 4)	intron (NM_001146342, intron 4 of 4)	1929.0	NR_039552	100628575.0		NR_039552	ENSMUSG00000106278	Mir3970	mmu-mir-3970|mu-mir-3970	microRNA 3970	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-12135199-4	chr17	12135168	12135368	+	967.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026644, intron 1 of 8)	intron (NM_026644, intron 1 of 8)	15984.0	NM_026644	68262.0	Mm.258300	NM_026644	ENSMUSG00000023827	Agpat4	1500003P24Rik	1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127540382-5	chr10	127540310	127540510	+	877.546692	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 83 of 88)	intron (NM_008512, intron 83 of 88)	-5851.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	1.55288835423323	1.06012506892154	2.96879908235951	1.00578255999716	2.31245275471975	2.22130276870131	1.30933567997535	1.65652013125527	-0.0489823065871382	0.966723676180369	0.998431161219273
Merged-chr11-51582937-4	chr11	51582886	51583086	+	834.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_153393, exon 29 of 29)	3' UTR (NM_153393, exon 29 of 29)	-1771.0	NM_028398	72947.0	Mm.256875	NM_028398	ENSMUSG00000020359	Phykpl	2900006B13Rik|Agxt2l2	5-phosphohydroxy-L-lysine phospholyase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-86781220-4	chr10	86781138	86781338	+	853.758301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175331, intron 1 of 13)	intron (NM_175331, intron 1 of 13)	2233.0	NM_175331	103466.0	Mm.200446	NM_175331	ENSMUSG00000054027	Nt5dc3	AU040402|AW540062|C630002B14Rik|TU12B1-TY	5'-nucleotidase domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-62324046-4	chr10	62323925	62324125	+	971.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010438, intron 4 of 21)	Lx5b|LINE|L1	16396.0	NM_001146100	15275.0	Mm.196605	NM_010438	ENSMUSG00000037012	Hk1	BB404130|Hk-1|Hk1-s|dea|mHk1-s	hexokinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-79060131-3	chr11	79060048	79060248	+	878.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001348207)	promoter-TSS (NM_001348207)	-312.0	NM_001348207	16706.0	Mm.4745	NM_013571	ENSMUSG00000018334	Ksr1	AW492498|B-KSR1|D11Bhm183e|D11Bhm184e|Ksr|RSU2|hb|mKSR1	kinase suppressor of ras 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-77876605-2	chr14	77876462	77876662	+	677.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1645.0	NM_025384	66148.0	Mm.248046	NM_025384	ENSMUSG00000022013	Dnajc15	1110003P16Rik|Dnajd1	DnaJ heat shock protein family (Hsp40) member C15	protein-coding	0.902106139081562	0.287674075515842	0.281213203159471	0.803204332984828	0.745772212147336	0.289129974540732	0.282638529021634	0.581399427404011	-0.700917376063273	0.715688822141666	1
Merged-chr14-57713023-4	chr14	57712918	57713118	+	984.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015771, intron 2 of 7)	intron (NM_015771, intron 2 of 7)	21400.0	NM_153382	50523.0	Mm.347899	NM_015771	ENSMUSG00000021959	Lats2	4932411G09Rik|AV277261|AW228608	large tumor suppressor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-92052429-4	chr1	92052316	92052516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207225, intron 3 of 26)	intron (NM_207225, intron 3 of 26)	127925.0	NM_207225	208727.0	Mm.318567	NM_207225	ENSMUSG00000026313	Hdac4	4932408F19Rik|HD4	histone deacetylase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-63952246-4	chr11	63952171	63952371	+	742.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	-11955.0	NR_131111	78883.0	Mm.410764	NR_131111	ENSMUSG00000086359	9630013K17Rik	-	RIKEN cDNA 9630013K17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98683076-2	chr11	98682976	98683176	+	996.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_009439, intron 1 of 11)	intron (NM_009439, intron 1 of 11)	522.0	NM_009439	22123.0	Mm.12194	NM_009439	ENSMUSG00000017221	Psmd3	AI255837|AntP91a|D11Bwg1349e|Psd3|Tstap91a	proteasome (prosome, macropain) 26S subunit, non-ATPase, 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-53448437-4	chr3	53448352	53448552	+	886.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14806.0	NM_172501	212114.0	Mm.85744	NM_172501	ENSMUSG00000042997	Nhlrc3	4833441N19|8030451K01Rik|mKIAA4083	NHL repeat containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-74126684-4	chr5	74126597	74126797	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33167.0	NR_031758	100313943.0	Mm.46547	NR_031758	ENSMUSG00000093355	Snora26	MBI-6	small nucleolar RNA, H/ACA box 26	snoRNA	0.0340566723901733	-0.179951301806501	-0.033958252453291	0.0717173588777734	-0.189166250969894	-0.179211218112514	0.211097786589167	-0.0454727023249397	-0.134571705892938	0.950028068358672	1
Merged-chr10-118809581-2	chr10	118809481	118809681	+	896.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	59322.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-18454303-2	chr18	18454203	18454403	+	704.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	-873313.0	NR_045374	75162.0	Mm.60874	NR_045374		4930545E07Rik	-	RIKEN cDNA 4930545E07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-134967876-3	chr1	134967808	134968008	+	771.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026024, intron 2 of 6)	intron (NM_026024, intron 2 of 6)	5343.0	NM_001278115	67196.0	Mm.284587	NM_026024	ENSMUSG00000026429	Ube2t	2700084L22Rik|C80607	ubiquitin-conjugating enzyme E2T	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-142402421-2	chr5	142402321	142402521	+	809.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_199068, intron 1 of 8)	intron (NM_199068, intron 1 of 8)	924.0	NM_199068	17425.0	Mm.24214	NM_010812	ENSMUSG00000056493	Foxk1	A630048H08Rik|AI463295|Gm10868|Mnf	forkhead box K1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4302844-2	chr19	4302744	4302944	+	723.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290818, intron 1 of 20)	intron (NM_001290818, intron 1 of 20)	3378.0	NM_130863	110355.0	Mm.254144	NM_130863	ENSMUSG00000024858	Grk2	Adrbk-1|Adrbk1|Bark-1|beta ARK|betaARK1	G protein-coupled receptor kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-60525439-2	chr18	60525393	60525593	+	894.916626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357462)	promoter-TSS (NM_001357462)	-661.0	NM_026302	67665.0	Mm.272801	NM_026302	ENSMUSG00000024603	Dctn4	1110001K06Rik|4930547K17Rik|C130039E17Rik|p62	dynactin 4	protein-coding	1.05451765466436	0.786865872327778	0.974733892275265	0.764696858210362	1.39588219694591	1.34450766121863	1.53307935376975	1.57424256653657	2.76946531143515	0.0518428596710456	0.333299965357618
Merged-chr19-55897798-2	chr19	55897698	55897898	+	868.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001142924, intron 1 of 11)	intron (NM_001142924, intron 1 of 11)	2477.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-139247289-1	chr7	139247189	139247389	+	1000.0	f1_balb.idr	Intergenic	Intergenic	-1193.0	NM_001033206	101631.0	Mm.334300	NM_001033206	ENSMUSG00000060260	Pwwp2b	AI594893|D7Ertd517e|D930023J19Rik|Pwwp2	PWWP domain containing 2B	protein-coding	2.64405335530924	2.85501994450481	3.33057541821001	2.68473181345152	2.3524375155133	2.32409266130754	2.54615745818671	2.88862138919199	-0.708133414541651	0.320986372758093	0.823346905075712
Merged-chr8-20550553-1	chr8	20550453	20550653	+	1000.0	f0_c57.idr	Intergenic	CpG	-64374.0	NM_001270553	100861668.0	Mm.491087	NM_001270553	ENSMUSG00000095294	Gm21119	-	predicted gene, 21119	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-105932667-3	chr1	105932571	105932771	+	917.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C-int|LTR|ERVK	57611.0	NR_151625	635504.0	Mm.359717	NR_151625		Gm7160	EG635504	predicted gene 7160	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91204846-4	chr2	91204739	91204939	+	918.474976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357067, intron 3 of 10)	intron (NM_001357067, intron 3 of 10)	1927.0	NM_007387	11432.0	Mm.45570	NM_007387	ENSMUSG00000002103	Acp2	Acp-2|LAP	acid phosphatase 2, lysosomal	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45105637-3	chr7	45105541	45105741	+	942.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1819.0	NM_010189	14132.0	Mm.3303	NM_010189	ENSMUSG00000003420	Fcgrt	FcRn	Fc receptor, IgG, alpha chain transporter	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35044679-2	chr17	35044578	35044778	+	650.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013600, intron 4 of 23)	intron (NM_013600, intron 4 of 23)	1944.0	NM_013600	17687.0	Mm.24192	NM_013600	ENSMUSG00000007035	Msh5	Mut5	mutS homolog 5	protein-coding	-0.432817867942484	-0.418928278786204	-0.423466112919898	-0.426975504318165	0.0734259817763351	0.346578405988449	-0.422464223033329	-0.426361891354681	3.68898536446478	0.157488750188233	1
Merged-chr19-3582670-2	chr19	3582570	3582770	+	606.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MuRRS-int|LTR|ERV1	-6921.0	NM_028999	52036.0	Mm.284686	NM_028999	ENSMUSG00000024908	Ppp6r3	4930528G08Rik|9130026N02Rik|D19Bwg1430e|D19Ertd703e|Pp6r3|Ppcs3|Pptcs3|Sapl|Saps3|mKIAA1558	protein phosphatase 6, regulatory subunit 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-137776242-2	chr5	137776142	137776342	+	749.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-2662.0	NM_001356989	69871.0	Mm.276058	NM_027242	ENSMUSG00000029725	Ppp1r35	2010007H12Rik|2010011D20Rik|AL024004	protein phosphatase 1, regulatory subunit 35	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-107761541-2	chr13	107761441	107761641	+	565.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 5 of 14)	intron (NM_145456, intron 5 of 14)	74144.0	NR_045900	72257.0	Mm.234155	NR_045900	ENSMUSG00000102000	1700006H21Rik	-	RIKEN cDNA 1700006H21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123139263-4	chr5	123139238	123139438	+	973.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2855.0	NM_001040398	208043.0	Mm.250391	NM_177581	ENSMUSG00000038384	Setd1b	AA516740|BC035291|KMT2G|mKIAA1076	SET domain containing 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-20728317-1	chr14	20728217	20728417	+	555.0	f1_c57bl6.idr	intron (NM_010811, intron 5 of 14)	intron (NM_010811, intron 5 of 14)	6245.0	NM_010811	17423.0	Mm.4084	NM_010811	ENSMUSG00000039308	Ndst2	Mndns|NDST-2	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-44239486-2	chr17	44239341	44239541	+	800.0	f0_balb.idr|f1_balb.idr	intron (NM_172621, intron 2 of 5)	intron (NM_172621, intron 2 of 5)	50869.0	NM_172621	224796.0	Mm.37666	NM_172621	ENSMUSG00000023959	Clic5	5730531E12Rik|B330005L24|Gm322|jbg|nmf318	chloride intracellular channel 5	protein-coding	0.609568086906249	0.836897573063012	0.441519822941266	0.282175698276472	0.784759555355805	0.292006950720997	0.445975272974957	0.282832900385424	-0.612468823140964	0.740458656594442	1
Merged-chr17-31519565-1	chr17	31519465	31519665	+	1000.0	f1_balb.idr	promoter-TSS (NM_030087)	promoter-TSS (NM_030087)	-550.0	NM_030087	78330.0	Mm.28349	NM_030087	ENSMUSG00000024038	Ndufv3	1500032D16Rik	NADH dehydrogenase (ubiquinone) flavoprotein 3	protein-coding	1.69553557045813	0.885219240675524	0.869563216767109	1.49669631639602	1.53074485349753	1.85282318471256	1.55827708519319	0.859415981593579	0.704068633804361	0.608635658361286	0.974576632476413
Merged-chr13-37893816-1	chr13	37893716	37893916	+	610.666687	f0_balb.idr	non-coding (NR_033615, exon 4 of 10)	non-coding (NR_033615, exon 4 of 10)	4945.0	NM_001177869	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-66104635-1	chr5	66104535	66104735	+	916.0	f1_c57bl6.idr	intron (NM_001127382, intron 2 of 7)	L2c|LINE|L2	-6456.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83648432-4	chr11	83648338	83648538	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011337, intron 2 of 2)	intron (NM_011337, intron 2 of 2)	940.0	NM_011337	20302.0	Mm.1282	NM_011337	ENSMUSG00000000982	Ccl3	AI323804|G0S19-1|LD78alpha|MIP-1alpha|MIP1-(a)|MIP1-alpha|Mip1a|Scya3	chemokine (C-C motif) ligand 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191718148-7	chr1	191718068	191718268	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001134829)	promoter-TSS (NM_001134829)	144.0	NM_172266	226856.0	Mm.277958	NM_172266	ENSMUSG00000026623	Lpgat1	AI649174|AW112037|BC013667	lysophosphatidylglycerol acyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-130803927-4	chr4	130803734	130803934	+	932.0476070000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011520, intron 1 of 4)	intron (NM_011520, intron 1 of 4)	11297.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-90066884-1	chr9	90066784	90066984	+	547.0	f1_balb.idr	intron (NM_001312649, intron 6 of 10)	intron (NM_001312649, intron 6 of 10)	12617.0	NM_001312649	13036.0	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	0.357925410587612	0.835289196198107	0.369417862622857	1.09054653443942	0.358983948460312	0.376373203987165	0.909793815888914	0.517531162679501	-0.95436251444146	0.614948513425119	1
Merged-chr11-39392495-2	chr11	39392395	39392595	+	571.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2270.0	NR_126439	75315.0	Mm.461295	NR_126439		4930553C11Rik	-	RIKEN cDNA 4930553C11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-99250485-2	chr5	99250390	99250590	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_181318, intron 1 of 13)	intron (NM_181318, intron 1 of 13)	2437.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-29372029-3	chr19	29371998	29372198	+	796.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021893, intron 1 of 6)	intron (NM_021893, intron 1 of 6)	4660.0	NM_021893	60533.0	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-39494657-2	chr18	39494557	39494757	+	851.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7412.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106302823-4	chr11	106302710	106302910	+	866.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008117)	promoter-TSS (NM_008117)	-914.0	NM_008117	14599.0	Mm.343934	NM_008117	ENSMUSG00000020713	Gh	Gh1|Ghb1	growth hormone	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-72957511-3	chr9	72957408	72957608	+	717.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1277.0	NM_026314	67685.0	Mm.31817	NM_026314	ENSMUSG00000092192	Dyx1c1	1700010I24Rik|Dnaaf4|EKN1|b2b811.1Clo|b2b811Clo	dyslexia susceptibility 1 candidate 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-62066728-2	chr18	62066628	62066828	+	718.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	113253.0	NM_007420	11555.0	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-77360960-2	chr10	77360860	77361060	+	591.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001024838, intron 1 of 11)	intron (NM_001024838, intron 1 of 11)	57313.0	NM_130895	110532.0	Mm.276815	NM_130895	ENSMUSG00000020262	Adarb1	1700057H01Rik|AW124433|AW558573|Adar2|BB220382|D10Bwg0447e|Red1	adenosine deaminase, RNA-specific, B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89771752-2	chr3	89771652	89771852	+	819.166687	f1_balb.idr|f1_c57bl6.idr	intron (NR_130957, intron 1 of 1)	intron (NR_130957, intron 1 of 1)	1648.0	NR_130957	74034.0	Mm.386816	NR_130957	ENSMUSG00000042579	4632404H12Rik	-	RIKEN cDNA 4632404H12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-76241353-4	chr18	76241234	76241434	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010754)	promoter-TSS (NM_010754)	-367.0	NM_010754	17126.0	Mm.152699	NM_010754	ENSMUSG00000024563	Smad2	7120426M23Rik|Madh2|Madr2|Smad-2|mMad2	SMAD family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171407965-2	chr1	171407861	171408061	+	713.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001005508, exon 12 of 12)	exon (NM_001005508, exon 12 of 12)	-3352.0	NM_001305678	22278.0	Mm.8	NM_009480	ENSMUSG00000026641	Usf1	bHLHb11	upstream transcription factor 1	protein-coding	1.01753216926256	1.05931573376245	0.882832269561998	0.542642440204585	1.11941009387963	0.559596713609029	0.551085236178219	1.0955764527532	-0.11744096087159	0.942460983129619	1
Merged-chr11-120626292-2	chr11	120626192	120626392	+	588.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1290.0	NM_153056	209011.0	Mm.292957	NM_153056	ENSMUSG00000025138	Sirt7	-	sirtuin 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-57977025-3	chr15	57976928	57977128	+	886.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8875.0	NM_173862	239463.0	Mm.221241	NM_173862	ENSMUSG00000051225	Fam83a	-	family with sequence similarity 83, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-115138835-2	chr13	115138735	115138935	+	998.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36871.0	NM_001033228	109700.0	Mm.317280	NM_001033228	ENSMUSG00000042284	Itga1	CD49A|E130012M19Rik|Vla1	integrin alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-37140338-4	chr3	37140241	37140441	+	946.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA9|LINE|L1	-14387.0	NM_008366	16183.0	Mm.14190	NM_008366	ENSMUSG00000027720	Il2	Il-2	interleukin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-39650172-4	chr8	39650054	39650254	+	993.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7476.0	NM_001113326	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-154065620-2	chr4	154065520	154065720	+	730.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001126331, intron 4 of 9)	intron (NM_001126331, intron 4 of 9)	-22943.0	NM_001033455	381580.0	Mm.51001	NM_001033455	ENSMUSG00000039492	Ccdc27	Gm1035	coiled-coil domain containing 27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-41347586-2	chr12	41347486	41347686	+	975.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_053122, intron 4 of 6)	RMER1B|Other|Other	138471.0	NM_001271708	16981.0	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-58734225-4	chr1	58734137	58734337	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355056, intron 4 of 8)	intron (NM_001355056, intron 4 of 8)	3685.0	NM_001293805	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80848447-2	chr7	80848347	80848547	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10B|LTR|ERVL	-13661.0	NM_009553	22691.0	Mm.358645	NM_009553	ENSMUSG00000038797	Zscan2	Zfp-29|Zfp29	zinc finger and SCAN domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-25200530-4	chr8	25200452	25200652	+	780.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177089, intron 1 of 12)	intron (NM_177089, intron 1 of 12)	990.0	NM_199323	320165.0	Mm.308452	NM_177089	ENSMUSG00000065954	Tacc1	4833447E04Rik|AA960202|B230378H13Rik	transforming, acidic coiled-coil containing protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-59551712-2	chr9	59551612	59551812	+	675.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010421, intron 1 of 13)	intron (NM_010421, intron 1 of 13)	12172.0	NM_010421	15211.0	Mm.2284	NM_010421	ENSMUSG00000025232	Hexa	Hex-1	hexosaminidase A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-78471221-2	chr9	78471117	78471317	+	943.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026658, intron 11 of 11)	B2_Mm1a|SINE|B2	10507.0	NM_010106	13627.0	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-43646371-1	chr19	43646271	43646471	+	936.5	f0_balb.idr	Intergenic	ID_B1|SINE|B4	-4364.0	NR_152201	100043245.0	Mm.402688	NR_152201		Gm4311	-	predicted gene 4311	ncRNA	1.03159304648617	0.88514622057267	0.860535035200204	1.96026034252529	1.52719799660645	2.01863929240183	0.866053536390188	2.62740169577373	1.78747445749272	0.172508431822771	0.640477311274911
Merged-chr17-57195074-2	chr17	57194974	57195174	+	587.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019418)	promoter-TSS (NM_019418)	-893.0	NM_019418	50930.0	Mm.483369	NM_019418	ENSMUSG00000005824	Tnfsf14	HVEM-L|HVEML|LIGHT|LTg|Ly113|Tnlg1d	tumor necrosis factor (ligand) superfamily, member 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-47746408-2	chr9	47746337	47746537	+	720.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	71771.0	NR_046048	100038460.0	Mm.447649	NR_046048		Gm10677	-	predicted gene 10677	ncRNA	-0.00583245300594143	0.0145102609954884	0.00789319629679	0.18282663253161	0.293313915426467	0.996035729058066	0.00935646961831363	0.338848921083866	3.33150231270617	0.103556163290951	1
Merged-chr1-153543678-3	chr1	153543579	153543779	+	860.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028749, intron 2 of 11)	intron (NM_028749, intron 2 of 11)	6035.0	NM_028749	74091.0	Mm.24887	NM_028749	ENSMUSG00000042684	Npl	0610033B02Rik	N-acetylneuraminate pyruvate lyase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-16951273-4	chr11	16951187	16951387	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_110425)	promoter-TSS (NR_110425)	-5.0	NR_110423	72735.0	Mm.268598	NR_015469		Eldr	2810442I21Rik|4930500E12Rik|Fabl	Egfr long non-coding downstream RNA	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-123386982-3	chr3	123386872	123387072	+	877.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_201638)	promoter-TSS (NM_201638)	-982.0	NM_201638	210529.0	Mm.260039	NM_201638	ENSMUSG00000028114	Mettl14	G430022H21Rik|mKIAA1627	methyltransferase like 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80702622-4	chr10	80702515	80702715	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027829)	promoter-TSS (NM_027829)	-78.0	NM_027829	71564.0	Mm.35802	NM_027829	ENSMUSG00000055862	Izumo4	9030607L17Rik|AI550407	IZUMO family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-14552341-4	chr14	14552248	14552448	+	897.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-150677.0	NM_001360505	218756.0	Mm.258893	NM_001033270	ENSMUSG00000021733	Slc4a7	E430014N10Rik|NBC3|NBCn1|NBCn1-G|Tg(Thy1-SNCA)12Mjff	solute carrier family 4, sodium bicarbonate cotransporter, member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-17003680-2	chr11	17003580	17003780	+	959.7000119999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_019549, intron 1 of 9)	intron (NM_019549, intron 1 of 9)	5038.0	NM_019549	56193.0	Mm.98232	NM_019549	ENSMUSG00000020120	Plek	2010300B13Rik	pleckstrin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4145145-4	chr19	4145043	4145243	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_206973, exon 2 of 2)	3' UTR (NM_206973, exon 2 of 2)	-3520.0	NM_011778	23789.0	Mm.276859	NM_011778	ENSMUSG00000024835	Coro1b	-	coronin, actin binding protein 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-27376757-4	chr16	27376654	27376854	+	946.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6515.0	NM_198166	224065.0	Mm.326918	NM_198166	ENSMUSG00000056423	Uts2b	Gm538|U2B|Urp|Uts2d	urotensin 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-24878036-4	chr5	24877938	24878138	+	961.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145401, intron 8 of 15)	intron (NM_145401, intron 8 of 15)	-24531.0	NR_040684	71161.0	Mm.443533	NR_040684	ENSMUSG00000086446	Prkag2os1	4933426D04Rik	protein kinase, AMP-activated, gamma 2 non-catalytic subunit, opposite strand 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-26693970-2	chr19	26693870	26694070	+	786.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011416, intron 21 of 32)	MTC|LTR|ERVL-MaLR	-54195.0	NM_001347439	67155.0	Mm.491146	NM_011416	ENSMUSG00000024921	Smarca2	2610209L14Rik|SNF2alpha|Snf2l2|brahma|brm	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-46728536-2	chr13	46728438	46728638	+	832.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175749)	promoter-TSS (NM_175749)	-689.0	NM_175749	218210.0	Mm.255398	NM_175749	ENSMUSG00000021374	Nup153	B130015D15Rik|C88147	nucleoporin 153	protein-coding	1.42197004761163	1.97043945334587	0.840143767871109	0.826126733270357	1.73789259288356	0.861874565097243	2.08219738728567	1.04723178520757	0.53947215667905	0.697890723912948	0.998087997318924
Merged-chr5-129594359-3	chr5	129594243	129594443	+	874.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011846, intron 1 of 9)	intron (NM_011846, intron 1 of 9)	10174.0	NM_011846	23948.0	Mm.42047	NM_011846	ENSMUSG00000029436	Mmp17	MT4-MMP|MT4MMP|MTMMP4	matrix metallopeptidase 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75513028-2	chr11	75512928	75513128	+	564.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001004157)	promoter-TSS (NM_001004157)	-513.0	NM_001004157	380713.0	Mm.10486	NM_001004157	ENSMUSG00000038188	Scarf1	AA986099|SREC|SREC-I|mKIAA0149	scavenger receptor class F, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-103472886-4	chr5	103472789	103472989	+	938.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011204, intron 2 of 47)	intron (NM_011204, intron 2 of 47)	47697.0	NM_011204	19249.0	Mm.3414	NM_011204	ENSMUSG00000034573	Ptpn13	AI324989|PTP-BL|PTPL1|Ptpri|RIP	protein tyrosine phosphatase, non-receptor type 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-6261853-2	chr11	6261753	6261953	+	786.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_026538, intron 11 of 13)	intron (NM_026538, intron 11 of 13)	5876.0	NM_026538	52513.0	Mm.29810	NM_026538	ENSMUSG00000004393	Ddx56	2600001H07Rik|D11Ertd619e|Noh61	DEAD (Asp-Glu-Ala-Asp) box polypeptide 56	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-25440542-3	chr8	25440353	25440553	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-78306.0	NM_001079909	14182.0	Mm.265716	NM_010206	ENSMUSG00000031565	Fgfr1	AW208770|Eask|FGFR-I|FLG|Fgfr-1|Flt-2|Hspy|MFR|bFGF-R-1|c-fgr	fibroblast growth factor receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-120688118-1	chr2	120688018	120688218	+	570.0	f1_balb.idr	Intergenic	Intergenic	43399.0	NM_026891	68968.0	Mm.2289	NM_026891	ENSMUSG00000027284	Cdan1	1500015A01Rik|AI448026|AW492297|CDA-I|CDA1|CDAI	congenital dyserythropoietic anemia, type I (human)	protein-coding	-0.802593673557486	-0.793094718163527	-0.341243695287107	-0.798614554876962	-0.802002397560642	-0.791090896558683	-0.332078011335404	-0.79819523297655	0.040958530317021	0.989184000390448	1
Merged-chr5-147539831-2	chr5	147539731	147539931	+	595.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028291, intron 16 of 18)	intron (NM_028291, intron 16 of 18)	109675.0	NM_028291	72587.0	Mm.320469	NM_028291	ENSMUSG00000029647	Pan3	2700050F09Rik|A430027N15Rik|AU014670	PAN3 poly(A) specific ribonuclease subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-3213934-3	chr15	3213835	3214035	+	754.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56832.0	NM_001042613	20363.0	Mm.392203	NM_009155	ENSMUSG00000064373	Selenop	AU018766|D15Ucla1|Se-P|Sepp1|selp	selenoprotein P	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-83141512-4	chr8	83141435	83141635	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23817.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	4.41433518528011	3.7089495845032	4.88526610458464	4.8381267394926	5.51153482575358	4.75314154621658	5.32811242733318	4.47192722566292	0.661677838192542	0.0940152368033711	0.475184838683992
Merged-chr18-11941343-4	chr18	11941259	11941459	+	918.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001146287, exon 9 of 10)	exon (NM_001146287, exon 9 of 10)	-100921.0	NR_035447	100316686.0		NR_035447	ENSMUSG00000084565	Mir1901	Mirn1901|mmu-mir-1901	microRNA 1901	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-100590563-2	chr10	100590463	100590663	+	557.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1304.0	NM_175128	68281.0	Mm.268474	NM_175128	ENSMUSG00000046567	4930430F08Rik	4930571E09Rik|A730088G13Rik|AW551239|C430008C19Rik	RIKEN cDNA 4930430F08 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-61394465-2	chr14	61394365	61394565	+	906.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008466, intron 2 of 16)	L1M4|LINE|L1	-34020.0	NM_026598	68177.0	Mm.22758	NM_026598	ENSMUSG00000021928	Ebpl	5730442K12Rik|EBRP	emopamil binding protein-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-31821370-3	chr5	31821251	31821451	+	719.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144541, intron 5 of 11)	intron (NM_144541, intron 5 of 11)	123301.0	NM_144541	107976.0	Mm.482126	NM_144541	ENSMUSG00000052139	Babam2	6030405P19Rik|AI429776|B830038C02Rik|Bre	BRISC and BRCA1 A complex member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-60760625-4	chr10	60760540	60760740	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7858.0	NM_023596	71279.0	Mm.284462	NM_023596	ENSMUSG00000020100	Slc29a3	4933435C21Rik|AW987637|Ent3	solute carrier family 29 (nucleoside transporters), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-134120288-2	chr1	134120188	134120388	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027979, intron 1 of 11)	intron (NM_027979, intron 1 of 11)	9046.0	NM_027979	71884.0	Mm.328268	NM_027979	ENSMUSG00000026450	Chit1	2300002L19Rik	chitinase 1 (chitotriosidase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-111439678-3	chr10	111439591	111439791	+	915.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	BC1_Mm|scRNA|scRNA	-33536.0	NM_001358932	53605.0	Mm.290407	NM_015781	ENSMUSG00000058799	Nap1l1	AA407126|AI256722|D10Ertd68e|NAP-1	nucleosome assembly protein 1-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-26626805-4	chr14	26626711	26626911	+	984.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285467, intron 16 of 19)	intron (NM_001285467, intron 16 of 19)	-11323.0	NM_007479	11843.0	Mm.297768	NM_007479	ENSMUSG00000021877	Arf4	AA407803	ADP-ribosylation factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-57858559-2	chr6	57858459	57858659	+	933.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-14102.0	NM_134183	171201.0	Mm.377179	NM_134183	ENSMUSG00000115343	Vmn1r21	V1rc28	vomeronasal 1 receptor 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70549439-4	chr14	70549341	70549541	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_180588)	TTS (NM_180588)	4190.0	NM_180588	72549.0	Mm.46742	NM_180588	ENSMUSG00000033589	Reep4	2700029E10Rik	receptor accessory protein 4	protein-coding	3.59443016561373	3.29207615594138	4.60895483468362	3.85312885358424	3.62440164322825	3.18814639657498	3.99084405323382	4.55322475870393	0.0083307413848054	0.987519977731196	0.998431161219273
Merged-chr13-21750578-4	chr13	21750469	21750669	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178211)	promoter-TSS (NM_178211)	-16.0	NM_178211	319160.0	Mm.255646	NM_178211	ENSMUSG00000064288	Hist1h4k	-	histone cluster 1, H4k	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-32560602-4	chr11	32560507	32560707	+	980.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 2 of 18)	intron (NM_009288, intron 2 of 18)	27341.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	4.67665118791362	4.22307426392009	2.89242019240239	5.62416912924069	4.78069445696291	5.10201064254937	5.02689448263727	5.18339994442367	0.415617764415183	0.377943709439886	0.871187225798265
Merged-chr17-35002408-2	chr17	35002308	35002508	+	949.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011690, intron 2 of 29)	MTD|LTR|ERVL-MaLR	1501.0	NM_011690	22321.0	Mm.28420	NM_011690	ENSMUSG00000007029	Vars	Bat6|D17H6S56E|G7a|Vars2	valyl-tRNA synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124496599-1	chr5	124496499	124496699	+	543.0	f1_c57bl6.idr	intron (NM_021430, intron 6 of 6)	MLT1C|LTR|ERVL-MaLR	13444.0	NM_029532	76167.0	Mm.156035	NM_029532	ENSMUSG00000029402	Snrnp35	6330548G22Rik	small nuclear ribonucleoprotein 35 (U11/U12)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131139544-3	chr1	131139429	131139629	+	701.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1295.0	NM_145508	226419.0	Mm.39299	NM_145508	ENSMUSG00000016526	Dyrk3	BC006704	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-122467854-4	chr2	122467752	122467952	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027919)	promoter-TSS (NR_027919)	-55.0	NR_027919	81913.0	Mm.122640	NR_027919		Bambi-ps1	-	BMP and activin membrane-bound inhibitor, pseudogene (Xenopus laevis)	pseudo	5.86179169605589	7.01148166635615	6.38929886848384	6.56494257361593	6.84119703651586	5.66539053561209	6.42786810719293	6.82560258562195	0.0123070193324382	0.964501257201432	0.998431161219273
Merged-chr17-84085903-4	chr17	84085783	84085983	+	858.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045458, intron 3 of 5)	intron (NR_045458, intron 3 of 5)	7223.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-73593087-3	chr15	73592976	73593176	+	721.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357747, intron 2 of 7)	intron (NM_001357747, intron 2 of 7)	3450.0	NM_001168255	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-139229115-2	chr7	139229015	139229215	+	936.541626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001143755)	TTS (NM_001143755)	-15808.0	NM_001162540	57740.0	Mm.65336	NM_021302	ENSMUSG00000015981	Stk32c	PKE|Pkek|YANK3	serine/threonine kinase 32C	protein-coding	0.176445896539554	0.0233870302372797	-0.157074184314317	-0.0109777299586169	-0.0322221235975356	-0.152215849382015	-0.156202582083897	0.335685330821088	0.0571489869227543	0.978532233188156	1
Merged-chr1-77516394-4	chr1	77516297	77516497	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1309.0	NM_007936	13838.0	Mm.400747	NM_007936	ENSMUSG00000026235	Epha4	2900005C20Rik|AI385584|Cek8|Hek8|Sek|Sek1|Tyro1|rb	Eph receptor A4	protein-coding	2.95051585801999	3.44118594705789	2.50826435594541	4.15578663540454	3.67745172377549	4.27567760594885	3.62069404047657	4.07805654666628	0.762839759657937	0.178140321683079	0.648461037485916
Merged-chr8-88755349-4	chr8	88755255	88755455	+	814.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58327.0	NM_001128171	74256.0	Mm.490395	NM_173369	ENSMUSG00000036712	Cyld	2010013M14Rik|2900009M21Rik|C130039D01Rik|CDMT|CYLD1|EAC|mKIAA0849	CYLD lysine 63 deubiquitinase	protein-coding	2.97224215509637	2.3457451091248	1.43735315179316	2.66634013436084	3.21834913945592	2.19645905360707	2.86069913147415	2.05700435956184	0.395037744030317	0.648477363399025	0.985197290992086
Merged-chr11-50359401-2	chr11	50359301	50359501	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1522.0	NR_030529	100049547.0		NR_030529	ENSMUSG00000076450	Mir804	Mirn804|mmu-mir-804	microRNA 804	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-50526133-4	chr16	50526015	50526215	+	991.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040380)	promoter-TSS (NR_040380)	-130.0	NR_040380	619312.0	Mm.427671	NR_040379		G730013B05Rik	linc-Cblb|linc1610	RIKEN cDNA G730013B05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-122614936-4	chr10	122614836	122615036	+	967.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33403.0	NR_105839	102465223.0		NR_105839	ENSMUSG00000098522	Mir6412	Gm27364|mmu-mir-6412	microRNA 6412	ncRNA	4.76871761647649	4.7872177341973	4.97835789520065	5.42079279302005	4.46456239048505	4.71779473761348	4.27892945419583	5.20485620071531	-0.366548587560505	0.309031109296131	0.8095277948042
Merged-chr8-127979571-2	chr8	127979471	127979671	+	871.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	298654.0	NR_105822	102465212.0		NR_105822	ENSMUSG00000099326	Mir21c	Gm28013|mmu-mir-21c	microRNA 21c	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-90932914-1	chr13	90932814	90933014	+	988.6666869999999	f0_balb.idr	Intergenic	Intergenic	9792.0	NM_024175	66475.0	Mm.306302	NM_024175	ENSMUSG00000049517	Rps23	2410044J15Rik	ribosomal protein S23	protein-coding	1.36170930595391	0.74641779352475	0.733336734135255	0.723089093933346	1.03214182361571	1.5791903909754	1.61828162863241	1.34943688480157	2.07775949132272	0.156448810229565	0.612488413683161
Merged-chr3-95636658-2	chr3	95636558	95636758	+	839.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	11678.0	NM_001026212	56205.0	Mm.241365	NM_019561	ENSMUSG00000038619	Ensa	1700020C18Rik|2610007F17Rik|AI451924	endosulfine alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71623854-1	chr8	71623754	71623954	+	793.0	f1_balb.idr	3' UTR (NM_146211, exon 12 of 12)	3' UTR (NM_146211, exon 12 of 12)	7252.0	NR_106035	102466799.0		NR_106035	ENSMUSG00000098976	Mir6769b	Gm27546|mmu-mir-6769b	microRNA 6769b	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-43122807-4	chr13	43122705	43122905	+	998.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001005748)	promoter-TSS (NM_001005748)	-34.0	NM_001005748	218194.0	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-29164582-4	chr17	29164480	29164680	+	925.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360239, intron 16 of 21)	RMER15|LTR|ERVL	29524.0	NM_001002786	442827.0	Mm.440341	NM_001002786	ENSMUSG00000064147	Rab44	9830134C10Rik	RAB44, member RAS oncogene family	protein-coding	4.24282322498733	4.28247323515824	2.43629547819307	4.7466400936054	5.11704093348806	3.84594437028057	4.41018782149739	5.22967596885793	0.76880285412145	0.137184409820755	0.577469500630244
Merged-chr12-8523955-2	chr12	8523855	8524055	+	619.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15611.0	NM_001038660	328059.0	Mm.46326	NM_177802	ENSMUSG00000020600	Slc7a15	Arpat	solute carrier family 7 (cationic amino acid transporter, y+ system), member 15	protein-coding	-0.112363714027467	0.120159287177298	-0.0992580060069349	-0.104160622933324	-0.111138215959733	0.454165578833691	0.830118848059786	-0.103302093160602	3.22514750673166	0.151593827138002	1
Merged-chr15-59906705-3	chr15	59906625	59906825	+	912.0277710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	109893.0	NM_027668	71088.0	Mm.425950	NM_027668	ENSMUSG00000071749	4933412E24Rik	-	RIKEN cDNA 4933412E24 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-62328615-4	chr14	62328498	62328698	+	931.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3470.0	NM_026001	67153.0	Mm.26040	NM_026001	ENSMUSG00000021932	Rnaseh2b	1110019N06Rik|2610207P08Rik|Dleu8	ribonuclease H2, subunit B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-20149667-2	chr13	20149567	20149767	+	581.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	59160.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-14863913-4	chr14	14863825	14864025	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195229, intron 19 of 34)	intron (NM_001195229, intron 19 of 34)	43110.0	NM_001195229	674895.0	Mm.317563	NM_001034865	ENSMUSG00000042567	Nek10	Gm282	NIMA (never in mitosis gene a)- related kinase 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-4082344-2	chr18	4082244	4082444	+	602.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-83488.0	NM_026092	67328.0	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117431052-2	chr8	117430952	117431152	+	723.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028941, intron 8 of 20)	intron (NM_028941, intron 8 of 20)	-21971.0	NR_106045	102466801.0		NR_106045	ENSMUSG00000099062	Mir7077	Gm27774|mmu-mir-7077	microRNA 7077	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-57690955-2	chr15	57690855	57691055	+	620.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Charlie1|DNA|hAT-Charlie	-3712.0	NM_199449	387609.0	Mm.36557	NM_199449	ENSMUSG00000071757	Zhx2	Afr-1|Afr1|Raf|mKIAA0854	zinc fingers and homeoboxes 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-45854062-2	chr1	45853962	45854162	+	669.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58896.0	NM_028599	73674.0	Mm.270376	NM_028599	ENSMUSG00000025995	Wdr75	1300003A18Rik|2410118I19Rik|C77608	WD repeat domain 75	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-47648994-2	chr6	47648894	47649094	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR18C_MM|LTR|ERVK	6100.0	NR_002841	19799.0		NR_002841		Rn4.5s	-	4.5S RNA	rRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-113837488-3	chr6	113837390	113837590	+	885.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001036684, intron 2 of 19)	MIRb|SINE|MIR	54049.0	NM_001036684	11941.0	Mm.321755	NM_009723	ENSMUSG00000030302	Atp2b2	D6Abb2e|Gena300|PMCA2|Tmy|dfw|jog|wms|wri	ATPase, Ca++ transporting, plasma membrane 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-46370821-4	chr18	46370734	46370934	+	989.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58906.0	NM_001160399	240261.0	Mm.329416	NM_001160399	ENSMUSG00000071855	Ccdc112	8430438M01Rik|AW108467	coiled-coil domain containing 112	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-22790532-4	chr2	22790395	22790595	+	929.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019456, intron 1 of 13)	intron (NM_019456, intron 1 of 13)	16168.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70469976-2	chr11	70469822	70470022	+	778.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9938.0	NM_023158	66102.0	Mm.425692	NM_023158	ENSMUSG00000018920	Cxcl16	0910001K24Rik|AV290116|BB024863|CXCL16v1|CXCL16v2|SR-PSOX|Zmynd15|b2b498Clo	chemokine (C-X-C motif) ligand 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-73517444-3	chr12	73517285	73517485	+	686.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29010.0	NM_178715	238257.0	Mm.251196	NM_178715	ENSMUSG00000034435	Tmem30b	9130011B11Rik	transmembrane protein 30B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167586424-2	chr2	167586324	167586524	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45581.0	NM_001311146	66589.0	Mm.278783	NM_023230	ENSMUSG00000078923	Ube2v1	0610011J09Rik|AI256840|CROC-1|CROC1|D7Bwg1382e|UEV-1	ubiquitin-conjugating enzyme E2 variant 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41847445-6	chr19	41847306	41847506	+	908.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177603, exon 1 of 1)	exon (NM_177603, exon 1 of 1)	726.0	NM_177603	212398.0	Mm.222723	NM_177603	ENSMUSG00000047604	Frat2	-	frequently rearranged in advanced T cell lymphomas 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-35129195-2	chr4	35129095	35129295	+	584.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178061, intron 1 of 3)	intron (NM_178061, intron 1 of 3)	-22860.0	NM_199157	387510.0	Mm.386929	NM_199157	ENSMUSG00000042993	Ifnk	-	interferon kappa	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-40971426-2	chr4	40971329	40971529	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_001290448, intron 1 of 15)	CpG	486.0	NM_023739	74164.0	Mm.247456	NM_023739	ENSMUSG00000028423	Nfx1	1300017N15Rik|3000003M19Rik|NFX.1|TEG-42|Tex42	nuclear transcription factor, X-box binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-10139790-4	chr8	10139684	10139884	+	991.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR26_Mus|LTR|ERVK	-14127.0	NM_001319151	244281.0	Mm.422761	NM_001081397	ENSMUSG00000039057	Myo16	BM140241|C230040D10Rik|Gm1105|NYAP3|mKIAA0865	myosin XVI	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-79830538-2	chr15	79830449	79830649	+	850.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013362, intron 4 of 8)	intron (NM_001013362, intron 4 of 8)	3784.0	NM_001013360	504193.0	Mm.38438	NM_029079	ENSMUSG00000089837	Npcd	Cbx6-Nptxr	neuronal pentraxin chromo domain	protein-coding	2.70796413204525	2.02089150552457	2.2333248258744	1.90266662234134	2.66743630013787	2.03531106045257	1.34408316199903	2.39775323570553	-0.11060208849982	0.906422003953657	0.998431161219273
Merged-chr11-44470043-2	chr11	44469953	44470153	+	1000.0	f0_c57.idr|f1_balb.idr	intron (NM_024475, intron 1 of 10)	intron (NM_024475, intron 1 of 10)	495.0	NM_024475	79560.0	Mm.338784	NM_024475	ENSMUSG00000041231	Ublcp1	4930527B16Rik|8430435I17Rik|BC002236	ubiquitin-like domain containing CTD phosphatase 1	protein-coding	3.69292620288724	3.42279437260246	2.74773523454888	2.35236011228686	4.02751301561182	3.4477150952068	3.24027729907106	3.2318239006887	0.583931808015147	0.347153099237428	0.847437850938575
Merged-chr2-167503740-8	chr2	167503694	167503894	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153838, intron 1 of 4)	CpG	351.0	NM_001360930	81018.0	Mm.22225	NM_030743	ENSMUSG00000006418	Rnf114	1110008J21Rik|AI225886|AW549494|Zfp228|Zfp313|Znf228	ring finger protein 114	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129812984-2	chr4	129812906	129813106	+	609.299988	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-7473.0	NM_008974	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	1.19369243487585	2.18125384230744	1.29236031379563	1.25647662228658	1.55634042546944	2.95441436209519	1.99507721145063	1.46942632841042	1.53754075072382	0.154663571461189	0.610069793551649
Merged-chr3-19199287-4	chr3	19199208	19199408	+	960.974976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356295, intron 1 of 7)	intron (NM_001356295, intron 1 of 7)	11013.0	NM_001356295	67472.0	Mm.45125	NM_026182	ENSMUSG00000027601	Mtfr1	1300002C08Rik|1700080D04Rik|2810026O10Rik|4930579E05Rik|Chppr|Fam54a2	mitochondrial fission regulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-74367772-3	chr1	74367689	74367889	+	918.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001033345, exon 8 of 10)	exon (NM_001033345, exon 8 of 10)	5681.0	NM_001033345	241112.0	Mm.310460	NM_001033345	ENSMUSG00000073650	Catip	Gm216	ciliogenesis associated TTC17 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-21035049-4	chr19	21034938	21035138	+	945.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69672.0	NR_126458	75354.0	Mm.243873	NR_126458		4930554I06Rik	-	RIKEN cDNA 4930554I06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124274410-2	chr6	124274310	124274510	+	589.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30241.0	NM_001170395	93671.0	Mm.37426	NM_053094	ENSMUSG00000008845	Cd163	CD163v2|CD163v3	CD163 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-104750034-3	chr13	104749964	104750164	+	763.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360094, intron 10 of 13)	intron (NM_001360094, intron 10 of 13)	66889.0	NM_026072	67285.0	Mm.235398	NM_026072	ENSMUSG00000021715	Cwc27	3110009E13Rik|NY-CO-10|Sdccag10	CWC27 spliceosome-associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88461647-4	chr3	88461531	88461731	+	780.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163489)	promoter-TSS (NM_001163489)	-449.0	NM_001163489	20351.0	Mm.439752	NM_013658	ENSMUSG00000028064	Sema4a	AI132332|SemB|Semab	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-36155283-4	chr12	36155201	36155401	+	794.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025840, intron 1 of 11)	intron (NM_025840, intron 1 of 11)	1524.0	NM_025840	66912.0	Mm.288669	NM_025840	ENSMUSG00000020547	Bzw2	1110001I24Rik|Bdm2|HSPC028	basic leucine zipper and W2 domains 2	protein-coding	-2.18138529563533	-2.15523716995652	-2.1631445789866	-2.16963996020037	-2.05513010215571	-2.15352360143315	-2.16135451490766	-2.16847729006863	0.759018020146679	0.829933115115583	1
Merged-chr7-42505770-4	chr7	42505649	42505849	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001309388)	promoter-TSS (NM_001309388)	4.0	NM_001309389	434178.0	Mm.333810	NM_001309388	ENSMUSG00000092416	Zfp141	-	zinc finger protein 141	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-78264934-1	chr10	78264834	78265034	+	555.0	f0_balb.idr	Intergenic	Intergenic	-20292.0	NM_001081055	216131.0	Mm.27539	NM_001081055	ENSMUSG00000000374	Trappc10	B230307C21Rik|Gm870|Tmem1|b2b2416Clo|b2b2613Clo	trafficking protein particle complex 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-121981646-4	chr7	121981499	121981699	+	975.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033318)	promoter-TSS (NM_001033318)	94.0	NM_001033318	233824.0	Mm.442015	NM_001033318	ENSMUSG00000034951	Cog7	5630400E24Rik|Gm167	component of oligomeric golgi complex 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-34782134-3	chr2	34782056	34782256	+	929.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145522, intron 6 of 7)	B1_Mur2|SINE|Alu	10066.0	NM_022310	14828.0	Mm.330160	NM_022310	ENSMUSG00000026864	Hspa5	AL022860|AU019543|Bip|D2Wsu141e|D2Wsu17e|Grp78|Hsce70|SEZ-7|Sez7|baffled|mBiP	heat shock protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5646707-2	chr17	5646607	5646807	+	642.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	-151950.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-69663674-4	chr18	69663559	69663759	+	805.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 15 of 19)	intron (NM_001361128, intron 15 of 19)	-261900.0	NM_201362	381175.0	Mm.266831	NM_201362	ENSMUSG00000038903	Ccdc68	BC046343	coiled-coil domain containing 68	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117706422-4	chr11	117706333	117706533	+	998.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198022, intron 3 of 21)	L1ME1|LINE|L1	52144.0	NM_198022	217351.0	Mm.40272	NM_198022	ENSMUSG00000025571	Tnrc6c	9930033H14Rik|mKIAA1582	trinucleotide repeat containing 6C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-5498741-1	chr6	5498641	5498841	+	571.0	f1_c57bl6.idr	Intergenic	Intergenic	-2463.0	NM_013743	27273.0	Mm.235547	NM_013743	ENSMUSG00000019577	Pdk4	AV005916	pyruvate dehydrogenase kinase, isoenzyme 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-63912173-4	chr7	63912095	63912295	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021366, intron 1 of 1)	intron (NM_021366, intron 1 of 1)	-4662.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	4.96058869995787	5.28076569864717	4.89766660647669	5.43812171480173	5.16459935958292	5.2787545619659	4.24446342551466	5.15342519670166	-0.168537538710059	0.615636784049253	0.977352076822579
Merged-chr6-97814008-2	chr6	97813908	97814108	+	582.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113198, intron 1 of 9)	MTA_Mm|LTR|ERVL-MaLR	6950.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-84838008-4	chr17	84837937	84838137	+	828.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47251.0	NM_028233	72416.0	Mm.217027	NM_028233	ENSMUSG00000024120	Lrpprc	3110001K13Rik|C76645|Gp130|Lrp130|Lsfc	leucine-rich PPR-motif containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123138353-4	chr5	123138239	123138439	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3854.0	NM_001040398	208043.0	Mm.250391	NM_177581	ENSMUSG00000038384	Setd1b	AA516740|BC035291|KMT2G|mKIAA1076	SET domain containing 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-84675440-2	chr18	84675340	84675540	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023149, intron 5 of 11)	B3|SINE|B2	6619.0	NM_001289531	66054.0	Mm.29646	NM_023149	ENSMUSG00000024644	Cndp2	0610010E05Rik|C76600|Cn2|Dip-2|Pep-1|Pep1	CNDP dipeptidase 2 (metallopeptidase M20 family)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-54577569-4	chr14	54577458	54577658	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010590, exon 1 of 8)	5' UTR (NM_010590, exon 1 of 8)	103.0	NM_010590	16475.0	Mm.100253	NM_010590	ENSMUSG00000022178	Ajuba	Jub	ajuba LIM protein	protein-coding	2.39257957685174	2.41616972573654	3.89393991201179	2.7518979976118	2.72024287282867	1.52433909371348	2.17950562242211	3.11365890520952	-0.934722838593949	0.261644950746117	0.762933275855131
Merged-chr5-123141449-6	chr5	123141332	123141532	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001040398)	promoter-TSS (NM_001040398)	-761.0	NM_001040398	208043.0	Mm.250391	NM_177581	ENSMUSG00000038384	Setd1b	AA516740|BC035291|KMT2G|mKIAA1076	SET domain containing 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-62761284-4	chr14	62761188	62761388	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008715)	promoter-TSS (NM_008715)	-176.0	NM_008715	18130.0	Mm.319684	NM_008715	ENSMUSG00000035161	Ints6	2900075H24Rik|AI480962|DICE1|Ddx26|HDB|Notch2l	integrator complex subunit 6	protein-coding	6.7861974974372	6.37201352796225	6.88599713870132	6.74415087135631	6.93336614757547	6.44633077789826	7.02518367167693	7.06881247422367	0.190974587627822	0.333877136832424	0.83397457759516
Merged-chr15-6567507-2	chr15	6567407	6567607	+	819.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12340.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-85406558-2	chr9	85406458	85406658	+	545.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-79408.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-90031735-2	chr7	90031635	90031835	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_110365, intron 1 of 5)	intron (NR_110365, intron 1 of 5)	2576.0	NR_110364	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-37236139-4	chr10	37236045	37236245	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-97219.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-90422384-2	chr15	90422284	90422484	+	583.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	68674.0	NR_155426	102640415.0	Mm.394352	NR_155426	ENSMUSG00000116204	Gm36480	-	predicted gene, 36480	ncRNA	0.431522488460556	0.493925786974311	0.474384671933704	2.19656192649916	1.02361525196035	0.498222930417439	0.478764039014363	1.9517206256261	-0.122093497979804	0.970245708879581	0.998431161219273
Merged-chr4-119959581-4	chr4	119959497	119959697	+	740.604187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010657, intron 1 of 8)	intron (NM_010657, intron 1 of 8)	144919.0	NM_010657	16656.0	Mm.302758	NM_010657	ENSMUSG00000028634	Hivep3	2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3	human immunodeficiency virus type I enhancer binding protein 3	protein-coding	2.74470962197495	3.17297829628137	2.62796845226284	3.42666129675656	3.16107780690638	2.87065055916835	2.34325711820571	3.08651264924196	-0.226494328354057	0.734713085103625	0.998431161219273
Merged-chr12-80855506-3	chr12	80855410	80855610	+	604.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001242419, intron 3 of 6)	intron (NM_001242419, intron 3 of 6)	64978.0	NM_001242419	217684.0	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-5250429-2	chr16	5250329	5250529	+	622.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027446, intron 3 of 7)	intron (NM_027446, intron 3 of 7)	5527.0	NM_027446	70511.0	Mm.45780	NM_027446	ENSMUSG00000022544	Eef2kmt	5730409G15Rik|Fam86|Fam86a|eEF2-KMT	eukaryotic elongation factor 2 lysine methyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100499963-3	chr7	100499866	100500066	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011671)	TTS (NM_011671)	6608.0	NM_011671	22228.0	Mm.171378	NM_011671	ENSMUSG00000033685	Ucp2	Slc25a8|UCP 2|UCPH	uncoupling protein 2 (mitochondrial, proton carrier)	protein-coding	2.08557539531267	1.753245973891	1.49197272888137	2.77379948288685	2.10343495351833	1.76568662893032	1.50212124095818	2.7227112096842	-0.0336421561019819	0.972780886056276	0.998431161219273
Merged-chr12-102704266-6	chr12	102704166	102704366	+	923.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172584, intron 1 of 9)	intron (NM_172584, intron 1 of 9)	603.0	NM_172584	217837.0	Mm.482192	NM_172584	ENSMUSG00000057963	Itpk1	BC031182	inositol 1,3,4-triphosphate 5/6 kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-117891626-4	chr6	117891517	117891717	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8723.0	NM_001166432	98758.0	Mm.422979	NM_133834	ENSMUSG00000042079	Hnrnpf	4833420I20Rik|AA407306|Hnrpf	heterogeneous nuclear ribonucleoprotein F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-13473944-2	chr10	13473844	13474044	+	550.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001195065, intron 1 of 12)	CpG	452.0	NM_001195065	215789.0	Mm.283359	NM_001033257	ENSMUSG00000062866	Phactr2	AV158170|BC012871	phosphatase and actin regulator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-37854231-10	chr13	37854109	37854309	+	962.1166380000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039188, intron 1 of 9)	intron (NM_001039188, intron 1 of 9)	26816.0	NM_001039188	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101261051-2	chr15	101260951	101261151	+	813.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5795.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	-0.841767756156018	-0.831415636600471	-0.835675855843558	-0.416291611050384	-0.841203587333483	-0.828665027884868	-0.375059509308956	-0.837569332616187	0.169476224413275	0.955860263787119	1
Merged-chr3-101603408-2	chr3	101603308	101603508	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144900, intron 1 of 22)	intron (NM_144900, intron 1 of 22)	1299.0	NM_144900	11928.0	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44814831-2	chr7	44814794	44814994	+	872.400024	f1_balb.idr|f1_c57bl6.idr	intron (NR_033136, intron 2 of 2)	L2a|LINE|L2	764.0	NM_030693	107503.0	Mm.389890	NM_030693	ENSMUSG00000038539	Atf5	AFTA|Atf7|Atfx|ODA-10	activating transcription factor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16843870-3	chr7	16843770	16843970	+	680.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_178900, intron 1 of 17)	intron (NM_178900, intron 1 of 17)	805.0	NM_178900	101540.0	Mm.1881	NM_178900	ENSMUSG00000041187	Prkd2	AI325941|PKD2	protein kinase D2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102570384-2	chr12	102570284	102570484	+	685.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_172584, exon 10 of 10)	exon (NM_172584, exon 10 of 10)	15443.0	NM_007693	12652.0	Mm.4137	NM_007693	ENSMUSG00000021194	Chga	ChrA|cgA	chromogranin A	protein-coding	1.77414234378444	1.77068711130375	1.94382075528203	1.3547417697485	1.1230936444808	0.984050237592633	0.96239524876147	2.44715818710416	-0.385101673437497	0.756499411783487	0.998431161219273
Merged-chr2-68862270-4	chr2	68862265	68862465	+	867.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347161, intron 1 of 10)	intron (NM_001347161, intron 1 of 10)	924.0	NM_001347161	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129640937-7	chr4	129640823	129641023	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001005506)	promoter-TSS (NM_001005506)	-118.0	NM_001005506	109658.0	Mm.268863	NM_001005506	ENSMUSG00000053841	Txlna	2600010N21Rik|AI425952|AW209241|Il14|Txln	taxilin alpha	protein-coding	5.05326024969445	4.00460279614423	5.32530369037182	4.80458944546457	5.14077939281223	4.19838350672873	4.79848857605927	4.78782065777334	-0.126356646420269	0.743109510207533	0.998431161219273
Merged-chr16-20301928-4	chr16	20301828	20302028	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005767, intron 1 of 9)	intron (NM_001005767, intron 1 of 9)	434.0	NM_001005767	381038.0	Mm.371737	NM_001005767	ENSMUSG00000033918	Parl	D16Ertd607e|PRO2207|PSARL1|PSENIP2|Psarl	presenilin associated, rhomboid-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-114358414-3	chr6	114358304	114358504	+	981.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-39532.0	NM_001317125	15465.0	Mm.333327	NM_008285	ENSMUSG00000053004	Hrh1	Bphs|H1R|HH1R|Hir	histamine receptor H1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-66272509-3	chr15	66272412	66272612	+	982.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152923, intron 1 of 14)	intron (NM_152923, intron 1 of 14)	13712.0	NM_152923	110862.0	Mm.255585	NM_152923	ENSMUSG00000056258	Kcnq3	-	potassium voltage-gated channel, subfamily Q, member 3	protein-coding	1.43432795618679	1.13941895940296	1.28391163839169	1.5173192784647	1.446969320011	0.91274040689978	1.11445837309535	2.13203000444364	0.550670351070897	0.657445766823022	0.988704682801132
Merged-chr11-32666618-3	chr11	32666498	32666698	+	699.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271349, intron 1 of 11)	intron (NM_001271349, intron 1 of 11)	24043.0	NM_001271347	103583.0	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-49193971-2	chr13	49193871	49194071	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013610, intron 2 of 3)	intron (NM_013610, intron 2 of 3)	6424.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3845299-2	chr19	3845199	3845399	+	673.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	-6474.0	NM_001271496	12660.0	Mm.225505	NM_013490	ENSMUSG00000024843	Chka	CK|CK/EK-alpha|Chetk-alpha|Chk|ChoK|EK|EtnK-alpha	choline kinase alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-26119826-4	chr2	26119737	26119937	+	849.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026495, intron 1 of 5)	intron (NM_026495, intron 1 of 5)	2974.0	NM_026495	67991.0	Mm.131074	NM_026495	ENSMUSG00000026932	Nacc2	0610020I02Rik|AI448087|Btbd14a|C030048H19Rik	nucleus accumbens associated 2, BEN and BTB (POZ) domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-32599445-3	chr16	32599347	32599547	+	836.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9449.0	NM_011638	22042.0	Mm.28683	NM_011638	ENSMUSG00000022797	Tfrc	2610028K12Rik|CD71|E430033M20Rik|Mtvr1|TFR|TFR1|TR|Trfr|p90	transferrin receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24758291-1	chr17	24758191	24758391	+	638.5	f0_balb.idr	exon (NM_001357340, exon 3 of 3)	exon (NM_001357340, exon 3 of 3)	5303.0	NM_001357340	328779.0	Mm.328848	NM_001012402	ENSMUSG00000039628	Hs3st6	3-OST-6	heparan sulfate (glucosamine) 3-O-sulfotransferase 6	protein-coding	0.8478761421106	0.462421117470667	0.647746632467425	0.445997314346886	0.736997178886442	1.35560847462576	0.45522987017835	1.13871359549317	1.94111543611493	0.24685800034955	1
Merged-chr18-34223697-6	chr18	34223606	34223806	+	976.305542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007462, intron 1 of 15)	intron (NM_007462, intron 1 of 15)	-1934.0	NR_040534	633395.0	Mm.414290	NR_040534	ENSMUSG00000073607	Gm10548	-	ribosomal protein L29 pseudogene	pseudo	1.59064970698713	1.68018331805857	1.61954241102343	0.935983489925597	1.384148392935	1.92683285416281	1.50056604782342	0.938241510074642	-0.00441172463993035	0.997198555517082	0.999268611847349
Merged-chr15-8099262-4	chr15	8099151	8099351	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081402)	promoter-TSS (NM_001081402)	-42.0	NM_001081402	545085.0	Mm.321312	NM_001081402	ENSMUSG00000039828	Wdr70	4833422F06Rik	WD repeat domain 70	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-37870856-2	chr16	37870756	37870956	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177093, intron 1 of 3)	B4A|SINE|B4	2456.0	NM_177093	320184.0	Mm.390882	NM_177093	ENSMUSG00000034158	Lrrc58	1810012N18Rik|C330018J07Rik	leucine rich repeat containing 58	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-8957861-4	chr3	8957766	8957966	+	835.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	6280.0	NM_001025262	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-85277816-1	chr1	85277716	85277916	+	1000.0	f1_balb.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-7250.0	NM_001037909	620078.0	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik	RIKEN cDNA C130026I21 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-99520421-2	chr6	99520321	99520521	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347345, intron 1 of 19)	intron (NM_001347345, intron 1 of 19)	572.0	NM_001347345	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-182342805-2	chr1	182342705	182342905	+	887.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC4|LINE|L1	-1199.0	NM_175127	67948.0	Mm.30737	NM_175127	ENSMUSG00000047539	Fbxo28	4833428J17Rik|5730505P19Rik|D1Ertd578e|Fbx28|mKIAA0483	F-box protein 28	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-79871005-1	chr11	79870905	79871105	+	1000.0	f0_c57.idr	Intergenic	Intergenic	91382.0	NM_144826	216987.0	Mm.274961	NM_144826	ENSMUSG00000035575	Utp6	4732497O03Rik|HCA66	UTP6 small subunit processome component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-81888162-2	chr16	81888062	81888262	+	719.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3A|LINE|L1	687465.0	NM_010954	17968.0	Mm.433941	NM_010954	ENSMUSG00000022762	Ncam2	Ncam-2|Ocam|RNCAM	neural cell adhesion molecule 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-39777466-2	chr1	39777366	39777566	+	790.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	27866.0	NM_001177348	100042065.0	Mm.209678	NM_001177348	ENSMUSG00000091937	Gm3646	-	predicted gene 3646	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-28592288-2	chr2	28592188	28592388	+	730.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-9009.0	NM_001290484	70239.0	Mm.274120	NM_148928	ENSMUSG00000026816	Gtf3c5	2700084A09Rik|TFIIIC63|TFiiiC2-63	general transcription factor IIIC, polypeptide 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-50025419-2	chr18	50025319	50025519	+	847.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177759, intron 1 of 1)	intron (NM_001177759, intron 1 of 1)	-5565.0	NM_001360935	106869.0	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-8535051-4	chr11	8534971	8535171	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 10 of 30)	intron (NM_001083587, intron 10 of 30)	129464.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	5.53493270681645	5.51180632260512	5.88824294485891	5.59915735955015	5.39680531475181	5.48191442938449	5.35627143984161	5.1469613165461	-0.333113066990038	0.21158630005166	0.700512509175108
Merged-chr7-47020739-2	chr7	47020639	47020839	+	897.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12325.0	NM_175318	101685.0	Mm.155687	NM_175318	ENSMUSG00000049516	Spty2d1	5830435K17Rik|AI852426|P16H6	SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55929894-2	chr19	55929794	55929994	+	719.375	f1_balb.idr|f1_c57bl6.idr	intron (NR_138565, intron 15 of 15)	intron (NR_138565, intron 15 of 15)	34573.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-43996408-4	chr10	43996300	43996500	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172393, intron 2 of 19)	intron (NM_172393, intron 2 of 19)	8446.0	NM_172393	11630.0	Mm.292082	NM_172393	ENSMUSG00000019866	Crybg1	AI462491|AI463325|Aim1	crystallin beta-gamma domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-89172682-4	chr15	89172595	89172795	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138749, intron 1 of 37)	intron (NM_138749, intron 1 of 37)	1256.0	NM_001159521	140570.0	Mm.267514	NM_138749	ENSMUSG00000036606	Plxnb2	Debt|plexin-B2	plexin B2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-55712647-4	chr17	55712556	55712756	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028370)	promoter-TSS (NM_028370)	-20.0	NR_151542	72836.0	Mm.177073	NM_028370	ENSMUSG00000024174	Pot1b	2810458H16Rik	protection of telomeres 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94525136-4	chr10	94525031	94525231	+	947.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172051, intron 1 of 3)	intron (NM_172051, intron 1 of 3)	10274.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-63278954-4	chr13	63278867	63279067	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289926, intron 13 of 15)	intron (NM_001289926, intron 13 of 15)	18180.0	NR_045794	100504114.0	Mm.437070	NR_045794	ENSMUSG00000097242	Gm16907	-	predicted gene, 16907	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-39026597-3	chr18	39026494	39026694	+	987.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361073, intron 1 of 21)	intron (NM_001361073, intron 1 of 21)	33449.0	NM_175164	71302.0	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-87734880-4	chr17	87734792	87734992	+	903.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	62335.0	NM_008628	17685.0	Mm.4619	NM_008628	ENSMUSG00000024151	Msh2	AI788990	mutS homolog 2	protein-coding	1.43025002040149	2.18080872454756	3.71035592448632	3.60982068430894	2.6719769160966	3.42716035616661	3.67690220248066	3.20920450907452	0.369461995910755	0.636981970037932	0.982417279970648
Merged-chr12-17265528-2	chr12	17265405	17265605	+	731.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-1090.0	NM_027959	71853.0	Mm.222825	NM_027959	ENSMUSG00000020571	Pdia6	1700015E05Rik|AL023058|C77895|CaBP5|P5|Txndc7	protein disulfide isomerase associated 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-52729107-1	chr15	52729007	52729207	+	541.0	f1_c57bl6.idr	intron (NM_027212, intron 3 of 3)	RMER13A2|LTR|ERVK	16662.0	NM_027212	69790.0	Mm.195562	NM_027212	ENSMUSG00000038622	Med30	1810038N03Rik|2510044J04Rik|TRAP25|Thrap6	mediator complex subunit 30	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16749330-2	chr7	16749230	16749430	+	706.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_198613)	TTS (NM_198613)	10886.0	NM_198613	232910.0	Mm.333597	NM_198613	ENSMUSG00000008036	Ap2s1	AI043088	adaptor-related protein complex 2, sigma 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-99030806-2	chr10	99030706	99030906	+	644.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-76276.0	NM_027740	382406.0	Mm.440656	NM_027740	ENSMUSG00000019952	Poc1b	4933430F16Rik|Wdr51b	POC1 centriolar protein B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-110479357-3	chr5	110479259	110479459	+	789.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30856.0	NM_001142642	381668.0	Mm.348782	NM_028596	ENSMUSG00000043323	Fbrsl1	2410025L10Rik|AI467568|Gm1049|Gm29766|mKIAA1545	fibrosin-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-78204968-4	chr16	78204836	78205036	+	841.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TA)n|Simple_repeat|Simple_repeat	50518.0	NR_045698	100503619.0	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-126156823-2	chr4	126156723	126156923	+	698.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025856, intron 6 of 11)	B3|SINE|B2	5842.0	NM_025856	66938.0	Mm.29813	NM_025856	ENSMUSG00000073758	Sh3d21	1700029G01Rik|AU019788	SH3 domain containing 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-137866383-4	chr4	137866275	137866475	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199307, intron 1 of 19)	intron (NM_199307, intron 1 of 19)	4138.0	NM_199307	230857.0	Mm.401062	NM_199307	ENSMUSG00000057530	Ece1	AW322500|ECE-1|ECE-1a|ECE-1b|ECE-1d	endothelin converting enzyme 1	protein-coding	1.01986067647643	1.29767333447717	1.52852083787122	0.868895725770652	1.1731281487534	1.30709229774492	1.85029971954023	1.59920456706176	1.18930674335516	0.344416777373763	0.845630114924368
Merged-chr17-8936791-3	chr17	8936698	8936898	+	695.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347321, intron 5 of 21)	intron (NM_001347321, intron 5 of 21)	-51535.0	NM_025851	66931.0	Mm.67591	NM_025851	ENSMUSG00000023873	1700010I14Rik	-	RIKEN cDNA 1700010I14 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129821453-4	chr4	129821358	129821558	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164745, intron 1 of 5)	intron (NM_001164745, intron 1 of 5)	750.0	NM_001164745	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	1.56188718612799	2.03553740180597	2.20065679978962	1.63178107805281	2.22260903513293	1.90363040496616	1.68351118502947	2.33466088089541	0.504236692712491	0.598763991470334	0.972303230574462
Merged-chr3-95111146-4	chr3	95111061	95111261	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009336, exon 1 of 6)	exon (NM_009336, exon 1 of 6)	119.0	NM_009336	21427.0	Mm.133919	NM_009336	ENSMUSG00000008958	Vps72	Tcfl1|YL-1	vacuolar protein sorting 72	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-76249274-2	chr5	76249174	76249374	+	812.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007715, intron 8 of 22)	intron (NM_007715, intron 8 of 22)	54228.0	NM_001305222	12753.0	Mm.3552	NM_007715	ENSMUSG00000029238	Clock	5330400M04Rik|KAT13D	circadian locomotor output cycles kaput	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-120095550-1	chr2	120095450	120095650	+	541.0	f1_c57bl6.idr	intron (NM_133838, intron 5 of 5)	intron (NM_133838, intron 5 of 5)	59025.0	NM_133838	98878.0	Mm.132226	NM_133838	ENSMUSG00000027293	Ehd4	2210022F10Rik|AI197390|AI846352|AV006278|Past2	EH-domain containing 4	protein-coding	0.937714539702833	0.781185115456885	1.23473274273634	0.585819642473203	0.714806747925373	1.29775196713073	0.592859891861585	0.88126782325024	-0.0185643028144308	0.990447036472894	1
Merged-chr4-108339611-3	chr4	108339543	108339743	+	803.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_027250, exon 3 of 3)	3' UTR (NM_027250, exon 3 of 3)	11491.0	NM_027250	69893.0	Mm.28354	NM_027250	ENSMUSG00000048351	Coa7	2010305A19Rik|AI451324|D4Ertd796e|Selrc1	cytochrome c oxidase assembly factor 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-22632109-4	chr11	22632014	22632214	+	917.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	119831.0	NM_153596	103765.0	Mm.221274	NM_153596	ENSMUSG00000049904	Tmem17	AI503894|AW049890	transmembrane protein 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26235561-4	chr17	26235545	26235745	+	944.18335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001206335, intron 1 of 12)	intron (NM_001206335, intron 1 of 12)	8597.0	NM_207217	106581.0	Mm.28844	NM_207217	ENSMUSG00000024187	Fam234a	Itfg3	family with sequence similarity 234, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-69250565-3	chr10	69250466	69250666	+	615.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252637, intron 4 of 10)	intron (NM_001252637, intron 4 of 10)	37372.0	NM_001252638	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140602449-2	chr5	140602349	140602549	+	623.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-4892.0	NM_008494	16848.0	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134430681-2	chr6	134430581	134430781	+	998.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355686, intron 4 of 5)	intron (NM_001355686, intron 4 of 5)	16253.0	NM_001355686	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-154890947-1	chr2	154890847	154891047	+	852.0	f1_c57bl6.idr	intron (NM_026030, intron 1 of 8)	B1_Mm|SINE|Alu	1959.0	NM_026030	67204.0	Mm.377134	NM_026030	ENSMUSG00000074656	Eif2s2	2810026E11Rik|38kDa|AA408636|AA571381|AA986487|AW822225|D2Ertd303e|EIF2|EIF2B	eukaryotic translation initiation factor 2, subunit 2 (beta)	protein-coding	-1.31349849087795	-1.28274354783242	-1.29349452597086	-1.3023256995151	-1.3130151546297	-1.28041376602105	-0.694015972326031	-1.30074492367298	2.57396649482007	0.456321314346772	1
Merged-chr8-56480086-1	chr8	56479986	56480186	+	674.0	f1_c57bl6.idr	intron (NR_131020, intron 1 of 2)	L1_Mur3|LINE|L1	4882.0	NR_131020	75123.0	Mm.72666	NR_131020	ENSMUSG00000110310	4930518J21Rik	-	RIKEN cDNA 4930518J21 gene	ncRNA	0.886831481553806	0.565721891000173	0.549731908613117	0.537057489368028	1.0427232649844	0.569262055812436	1.65151695523495	2.03271810818003	3.60635868236076	0.0296108491128233	0.235013069057149
Merged-chr10-45090663-2	chr10	45090563	45090763	+	699.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011156, intron 2 of 14)	intron (NM_011156, intron 2 of 14)	23449.0	NM_011156	19072.0	Mm.10281	NM_011156	ENSMUSG00000019849	Prep	AI047692|AI450383|D10Wsu136e|PEP|Pop	prolyl endopeptidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-15269032-4	chr4	15268808	15269008	+	959.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181401, intron 1 of 2)	intron (NM_181401, intron 1 of 2)	3088.0	NM_181401	100201.0	Mm.394111	NM_181401	ENSMUSG00000043252	Tmem64	9630015D15Rik|AI790744|AV300874	transmembrane protein 64	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-113774642-2	chr5	113774542	113774742	+	798.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_025526, intron 2 of 4)	intron (NM_025526, intron 2 of 4)	1830.0	NM_025526	66383.0	Mm.29497	NM_025526	ENSMUSG00000025825	Iscu	2310020H20Rik|AA407971|Nifu|Nifun	iron-sulfur cluster assembly enzyme	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-146578768-4	chr6	146578661	146578861	+	925.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138757)	promoter-TSS (NM_138757)	850.0	NM_026218	67529.0	Mm.333499	NM_026218	ENSMUSG00000040242	Fgfr1op2	1500031J01Rik	FGFR1 oncogene partner 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-62541744-4	chr11	62541639	62541839	+	998.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M5|LINE|L1	-2478.0	NM_028448	73139.0	Mm.390409	NM_028448	ENSMUSG00000018509	Cenpv	3110013H01Rik|AA671303|Prr6	centromere protein V	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98767500-4	chr11	98767396	98767596	+	807.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_145434)	TTS (NM_145434)	7881.0	NM_145434	217166.0	Mm.390397	NM_145434	ENSMUSG00000020889	Nr1d1	A530070C09Rik|R75201	nuclear receptor subfamily 1, group D, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-136677173-2	chr1	136677073	136677273	+	818.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6223.0	NR_045324	100503460.0	Mm.30630	NR_045324	ENSMUSG00000097113	Gm19705	-	predicted gene, 19705	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134824588-4	chr6	134824417	134824617	+	944.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA4|LINE|L1	-5682.0	NM_177687	232430.0	Mm.267010	NM_177687	ENSMUSG00000032652	Crebl2	AI046348|B230205M03	cAMP responsive element binding protein-like 2	protein-coding	3.06712711469608	3.37913991110435	3.92905630081	3.30584215112359	2.09685645089588	1.73279858648515	1.36156910423438	1.60467081149172	-3.52631959644974	3.0977323780795e-05	0.00118114172898934
Merged-chr2-6118308-2	chr2	6118208	6118408	+	631.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144883, intron 1 of 3)	intron (NM_144883, intron 1 of 3)	11877.0	NM_144883	227545.0	Mm.133542	NM_144883	ENSMUSG00000045319	Proser2	5430407P10Rik|AU067770	proline and serine rich 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117803453-4	chr11	117803359	117803559	+	995.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029964, intron 3 of 5)	MIRb|SINE|MIR	5799.0	NM_029964	77727.0	Mm.159981	NM_029964	ENSMUSG00000025573	6030468B19Rik	Il-40	RIKEN cDNA 6030468B19 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-119824999-4	chr8	119824895	119825095	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028071, intron 2 of 3)	intron (NM_028071, intron 2 of 3)	15584.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-125175819-2	chr5	125175719	125175919	+	802.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253905, intron 1 of 42)	intron (NM_001253905, intron 1 of 42)	3395.0	NM_001253905	20602.0	Mm.278646	NM_011424	ENSMUSG00000029478	Ncor2	N-CoR|SMRT|SMRTe	nuclear receptor co-repressor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36123905-4	chr1	36123790	36123990	+	890.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20423.0	NR_105862	102465540.0		NR_105862	ENSMUSG00000098752	Mir6897	Gm27652|mmu-mir-6897	microRNA 6897	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-75068068-2	chr8	75067968	75068168	+	654.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001136259, intron 14 of 15)	intron (NM_001136259, intron 14 of 15)	-25550.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-111054059-1	chr9	111053959	111054159	+	768.0	f0_balb.idr	TTS (NM_001302376)	TTS (NM_001302376)	3185.0	NM_001302377	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-146141425-4	chr6	146141320	146141520	+	780.395874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019923, intron 55 of 56)	intron (NM_019923, intron 55 of 56)	207298.0	NM_010656	16651.0	Mm.49689	NM_010656	ENSMUSG00000030255	Sspn	Krag	sarcospan	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-29374283-4	chr11	29374209	29374409	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_176841, exon 1 of 32)	5' UTR (NM_176841, exon 1 of 32)	137.0	NM_176841	108686.0	Mm.338284	NM_176841	ENSMUSG00000032740	Ccdc88a	A430106J12Rik|AI848406|Ape|C130096N06Rik|C330012F17Rik|D130005J21Rik|Girdin|Giv|Grdn|Hkrp1	coiled coil domain containing 88A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-55202200-4	chr13	55202098	55202298	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-7584.0	NM_008739	18193.0	Mm.168965	NM_008739	ENSMUSG00000021488	Nsd1	AI528500|KMT3B	nuclear receptor-binding SET-domain protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-115209575-4	chr13	115209466	115209666	+	998.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-107602.0	NM_001033228	109700.0	Mm.317280	NM_001033228	ENSMUSG00000042284	Itga1	CD49A|E130012M19Rik|Vla1	integrin alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-144337931-4	chr2	144337811	144338011	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5831.0	NM_026924	107586.0	Mm.252750	NM_026924	ENSMUSG00000037279	Ovol2	1700108N11Rik|1810007D21Rik|M-OVO|M-OVO-A|M-OVO-B|MOVO|Ovo2|Zfp339|movo2	ovo like zinc finger 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127945472-3	chr10	127945351	127945551	+	865.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46916.0	NM_027301	70061.0	Mm.158320	NM_027301	ENSMUSG00000040127	Sdr9c7	1810054F20Rik|Rdh20|Rdhs|SDR-O|Sdro	4short chain dehydrogenase/reductase family 9C, member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70459052-2	chr11	70458952	70459152	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001348337)	promoter-TSS (NM_001348337)	-381.0	NM_001348337	574428.0	Mm.425692	NM_001029929	ENSMUSG00000040829	Zmynd15	-	zinc finger, MYND-type containing 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-142882106-4	chr3	142882054	142882254	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178654)	promoter-TSS (NM_178654)	-150.0	NM_178654	109333.0	Mm.244236	NM_178654	ENSMUSG00000004591	Pkn2	6030436C20Rik|AI507382|PRK2|Prkcl2|Stk7	protein kinase N2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70001868-4	chr8	70001717	70001917	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-5433.0	NM_145596	234366.0	Mm.270044	NM_145596	ENSMUSG00000036180	Gatad2a	1110066C11Rik|BC031407|C80248	GATA zinc finger domain containing 2A	protein-coding	2.09106108293316	2.52434428640737	1.68685440327543	2.80537279403523	3.60695572514584	2.80398712062852	1.41352721426006	3.33703167052245	1.26233113761485	0.145779235659067	0.596091332081597
Merged-chr16-57455798-4	chr16	57455713	57455913	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	-93429.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-90462552-4	chr6	90462443	90462643	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023184)	promoter-TSS (NM_023184)	-33.0	NM_001355668	66277.0	Mm.38343	NM_023184	ENSMUSG00000030087	Klf15	1810013I09Rik|AV048136|AW494632|CKLF|KKLF	Kruppel-like factor 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31376114-4	chr14	31376024	31376224	+	921.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347585, intron 6 of 7)	intron (NM_001347585, intron 6 of 7)	39486.0	NM_009796	12339.0	Mm.201535	NM_009796	ENSMUSG00000021893	Capn7	AU022319|PalBH	calpain 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-119004096-4	chr10	119003996	119004196	+	997.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	46403.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-60269538-4	chr2	60269428	60269628	+	756.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025422, intron 2 of 4)	L2|LINE|L2	14956.0	NM_025422	66205.0	Mm.227281	NM_025422	ENSMUSG00000060703	Cd302	1110055L24Rik|AI159627	CD302 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-90270160-2	chr3	90270060	90270260	+	719.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_105979)	promoter-TSS (NR_105979)	11.0	NR_105979	102465612.0		NR_105979	ENSMUSG00000099199	Mir7012	Gm27370|mmu-mir-7012	microRNA 7012	ncRNA	-1.13799161856527	-1.11509962161431	-1.12611682695956	-0.600839935108385	-0.990754861597232	-1.11271214725662	-1.12362277315966	-1.13354676675577	-1.63747442377455	0.616904426498488	1
Merged-chr11-60115355-4	chr11	60115237	60115437	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009021, intron 1 of 5)	CpG	10324.0	NM_009021	19377.0	Mm.296366	NM_009021	ENSMUSG00000062115	Rai1	Gt1	retinoic acid induced 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-45274854-4	chr9	45274774	45274974	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5725.0	NM_001324486	16154.0	Mm.379327	NM_008348	ENSMUSG00000032089	Il10ra	AW553859|CDw210|CDw210a|IL-10R1|IL-10RA|Il10r|mIL-10R	interleukin 10 receptor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-35329658-2	chr2	35329558	35329758	+	679.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013515, intron 1 of 6)	intron (NM_013515, intron 1 of 6)	7351.0	NM_013515	13830.0	Mm.295284	NM_013515	ENSMUSG00000026880	Stom	Epb7.2	stomatin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-39635028-4	chr18	39634899	39635099	+	898.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-138498.0	NM_011033	18459.0	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141622689-1	chr4	141622589	141622789	+	557.0	f1_c57bl6.idr	intron (NM_001013780, intron 1 of 4)	ID_B1|SINE|B4	1145.0	NM_001013780	384071.0	Mm.295682	NM_001013780	ENSMUSG00000040740	Slc25a34	Gm1369	solute carrier family 25, member 34	protein-coding	0.894554307868883	0.198755774789145	0.646811500780931	0.187731829605381	0.662588822025018	0.396718952211544	0.193908006581239	0.188571346486879	-0.94422714643258	0.635843788286941	1
Merged-chr7-101293563-2	chr7	101293463	101293663	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_152152, intron 9 of 16)	intron (NR_152152, intron 9 of 16)	8525.0	NM_001111111	73683.0	Mm.275744	NM_001111111	ENSMUSG00000047767	Atg16l2	2410118P20Rik	autophagy related 16-like 2 (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-25072381-4	chr2	25072281	25072481	+	806.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7942.0	NM_028093	72090.0	Mm.33403	NM_028093	ENSMUSG00000036813	Entpd8	-	ectonucleoside triphosphate diphosphohydrolase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-63094446-2	chr16	63094346	63094546	+	687.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	240139.0	NM_011173	19128.0	Mm.127156	NM_011173	ENSMUSG00000022912	Pros1	AW214361	protein S (alpha)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-37806298-3	chr18	37806209	37806409	+	799.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033581)	promoter-TSS (NM_033581)	-101.0	NM_033581	93706.0	Mm.247203	NM_033581	ENSMUSG00000102918	Pcdhgc3	PC43|Pcdh2	protocadherin gamma subfamily C, 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-36118406-2	chr13	36118306	36118506	+	737.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039189, intron 1 of 5)	intron (NM_001039189, intron 1 of 5)	763.0	NM_001039189	69955.0	Mm.70690	NM_024274	ENSMUSG00000021420	Fars2	Fars1|pheRS	phenylalanine-tRNA synthetase 2 (mitochondrial)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-86357498-2	chr1	86357398	86357598	+	783.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010880, intron 2 of 13)	intron (NM_010880, intron 2 of 13)	-1171.0	NR_002851	80828.0		NR_002851	ENSMUSG00000064823	Snord82	Rnu82|U82|Z25	small nucleolar RNA, C/D box 82	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115701782-2	chr11	115701682	115701882	+	909.2000119999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_008163, intron 1 of 5)	B2_Mm1t|SINE|B2	-1854.0	NM_001313936	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-78442071-2	chr9	78441971	78442171	+	962.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_125721, intron 1 of 4)	intron (NR_125721, intron 1 of 4)	1166.0	NR_125721	214763.0	Mm.101559	NM_173386	ENSMUSG00000032344	Mb21d1	E330016A19Rik|cGAS	Mab-21 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-99185834-2	chr10	99185734	99185934	+	586.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153333, intron 11 of 12)	ORR1D1|LTR|ERVL-MaLR	-77397.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-137387130-4	chr6	137387028	137387228	+	946.2333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011216, intron 7 of 26)	intron (NM_011216, intron 7 of 26)	-23593.0	NM_001164402	19277.0	Mm.186361	NM_011216	ENSMUSG00000030223	Ptpro	D28|GLEPP1|PTPBK|PTPROt|PTPU2|PTPoc|PTPphi|Ptpn15|R-PTP-O	protein tyrosine phosphatase, receptor type, O	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118126144-2	chr11	118126044	118126244	+	563.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001167746, intron 3 of 80)	intron (NM_001167746, intron 3 of 80)	3075.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-156416574-2	chr2	156416473	156416673	+	793.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4336.0	NM_001291122	13821.0	Mm.20852	NM_013510	ENSMUSG00000027624	Epb41l1	4.1N|Epb4.1l1|NBL1|mKIAA0338	erythrocyte membrane protein band 4.1 like 1	protein-coding	0.836775905837103	0.703627410989701	0.690804074997343	1.41061597783478	0.666316564359987	1.41879680746594	1.47591813242358	1.51855026964159	1.50558445101832	0.318909470640078	0.821951596143819
Merged-chr8-70660532-4	chr8	70660447	70660647	+	905.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023217)	promoter-TSS (NM_023217)	-809.0	NM_023217	66522.0	Mm.154906	NM_023217	ENSMUSG00000056204	Pgpep1	2810003H13Rik|Gm19458|PAP-I|PGP|PGP-I|PGPI|Pcp	pyroglutamyl-peptidase I	protein-coding	3.61515290694186	3.41204752600388	3.19528276277078	3.2034168870014	3.7001129781084	2.9540385011174	3.80461531068076	4.08140738624838	0.50826559623374	0.349058777644593	0.849519302618722
Merged-chr13-52507676-3	chr13	52507575	52507775	+	754.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001024474, exon 2 of 2)	exon (NM_001024474, exon 2 of 2)	23161.0	NM_001024474	68203.0	Mm.29362	NM_001024474	ENSMUSG00000047842	Diras2	2900052J15Rik|AI414999	DIRAS family, GTP-binding RAS-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-21200196-4	chr13	21200124	21200324	+	999.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	tRNA-Leu-TTG|tRNA|tRNA	20293.0	NM_009054	19720.0	Mm.314056	NM_009054	ENSMUSG00000021326	Trim27	AW538890|Gm19403|Rfp	tripartite motif-containing 27	protein-coding	3.5957023908461	3.73992157712108	4.056112071642	2.18711090429155	3.83927419429973	3.60219990277057	3.85311435458726	2.56876423628604	0.00410575044487007	0.994788660481726	0.998431161219273
Merged-chr6-52490609-2	chr6	52490509	52490709	+	787.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1842.0	NR_046049	74304.0	Mm.490579	NR_046049	ENSMUSG00000107895	1700094M24Rik	-	RIKEN cDNA 1700094M24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-112628528-2	chr12	112628428	112628628	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007421, intron 2 of 12)	intron (NM_007421, intron 2 of 12)	8481.0	NM_007421	11565.0	Mm.3440	NM_007421	ENSMUSG00000011148	Adssl1	AI528595|Adss|Adss1	adenylosuccinate synthetase like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-29170698-1	chr6	29170598	29170798	+	838.5	f1_c57bl6.idr	exon (NM_001101443, exon 5 of 5)	exon (NM_001101443, exon 5 of 5)	-5974.0	NM_133925	68272.0	Mm.40802	NM_026650	ENSMUSG00000029701	Rbm28	2810480G15Rik|AI503051	RNA binding motif protein 28	protein-coding	0.299761191714748	1.14406137168378	1.18312973228713	0.312337111234347	1.05113599659916	0.331491213745866	0.321918595299693	0.313646770287049	-1.26158235156306	0.518890524908341	1
Merged-chr2-30796653-4	chr2	30796558	30796758	+	911.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028487, intron 4 of 6)	intron (NR_028487, intron 4 of 6)	5079.0	NM_198000	73598.0	Mm.34166	NM_198000	ENSMUSG00000044320	1700001O22Rik	1700113K14Rik|4930549G18Rik	RIKEN cDNA 1700001O22 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-78586479-2	chr9	78586379	78586579	+	888.099976	f1_balb.idr|f1_c57bl6.idr	intron (NM_172773, intron 1 of 10)	intron (NM_172773, intron 1 of 10)	1566.0	NM_172773	235504.0	Mm.46932	NM_172773	ENSMUSG00000049624	Slc17a5	4631416G20Rik|4732491M05|AST|ISSD|NSD|SD|SIALIN|SIASD|SLD	solute carrier family 17 (anion/sugar transporter), member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-123869484-4	chr9	123869389	123869589	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7460.0	NM_011798	23832.0	Mm.390241	NM_011798	ENSMUSG00000060509	Xcr1	Ccxcr1|Gpr5|mXcr1	chemokine (C motif) receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-40935864-2	chr14	40935780	40935980	+	554.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145928, intron 1 of 8)	intron (NM_145928, intron 1 of 8)	12329.0	NM_001316748	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-22100642-2	chr9	22100542	22100742	+	641.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009922, intron 1 of 6)	intron (NM_009922, intron 1 of 6)	1389.0	NM_009922	12797.0	Mm.4356	NM_009922	ENSMUSG00000001349	Cnn1	CN|CnnI	calponin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-38300013-2	chr15	38299895	38300095	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_001357677)	promoter-TSS (NM_001357677)	-95.0	NM_001357677	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36240091-4	chr18	36239988	36240188	+	808.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MERVL_2A-int|LTR|ERVL	-41074.0	NM_008989	19290.0	Mm.231802	NM_008989	ENSMUSG00000043991	Pura	CAGER-1|Pur-alpha|ssCRE-BP	purine rich element binding protein A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-45161281-4	chr19	45161206	45161406	+	996.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10591.0	NM_021901	21908.0	Mm.391203	NM_021901	ENSMUSG00000025215	Tlx1	Hox-11|Hox11|Tlx-1	T cell leukemia, homeobox 1	protein-coding	4.85851267591196	4.97200626349689	4.44667060459035	4.47914164362191	4.89367104771222	4.91929946039676	5.18084925204703	3.23844289276517	0.0283327341492036	0.947471793304804	0.998431161219273
Merged-chr13-119615641-2	chr13	119615541	119615741	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8178.0	NM_020279	56838.0	Mm.143745	NM_020279	ENSMUSG00000074715	Ccl28	CCK1|MEC|Scya28	chemokine (C-C motif) ligand 28	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-53265807-3	chr19	53265706	53265906	+	935.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10601.0	NR_036590	69319.0	Mm.57452	NR_036590		1700001K23Rik	-	RIKEN cDNA 1700001K23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-170573535-4	chr1	170573427	170573627	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109985, intron 1 of 9)	intron (NM_001109985, intron 1 of 9)	16322.0	NM_001109985	70729.0	Mm.409310	NM_027528	ENSMUSG00000038473	Nos1ap	6330408P19Rik|Capon	nitric oxide synthase 1 (neuronal) adaptor protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-62079721-4	chr11	62079617	62079817	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029936, intron 1 of 12)	ERV3-16A3_LTR|LTR|ERVL	2693.0	NM_001029936	432572.0	Mm.438022	NM_001029936	ENSMUSG00000042331	Specc1	2810012G08Rik|B230396K10Rik|Cytsb	sperm antigen with calponin homology and coiled-coil domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-140462564-2	chr6	140462464	140462664	+	580.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144920, intron 3 of 30)	intron (NM_144920, intron 3 of 30)	38465.0	NM_144920	109135.0	Mm.247670	NM_144920	ENSMUSG00000030231	Plekha5	2810431N21Rik|AI428202|AK129423|AMH-Cre|Ayu21-9|Gt(pU21)9Imeg|Pepp2|Tg(AMH-cre)1Flor	pleckstrin homology domain containing, family A member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-102045234-3	chr5	102045094	102045294	+	729.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 1 of 66)	intron (NM_172882, intron 1 of 66)	24727.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-142896463-4	chr5	142896241	142896441	+	770.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-1103.0	NM_001033312	231863.0	Mm.89753	NM_001033312	ENSMUSG00000066640	Fbxl18	AI427077|B130019G13Rik|C330021B20Rik	F-box and leucine-rich repeat protein 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-80939360-4	chr12	80939303	80939503	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F1|LTR|ERVL-MaLR	5996.0	NR_045057	100504661.0	Mm.442322	NR_045057	ENSMUSG00000112880	Gm20337	-	predicted gene, 20337	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-76522226-4	chr12	76522115	76522315	+	860.912476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	10997.0	NR_039597	100628604.0		NR_039597	ENSMUSG00000092738	Mir5135	mir-5135|mmu-mir-5135|mu-mir-5135	microRNA 5135	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-152259633-4	chr3	152259542	152259742	+	909.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199465, intron 1 of 12)	intron (NM_199465, intron 1 of 12)	6153.0	NM_001357206	68810.0	Mm.200188	NM_199465	ENSMUSG00000039103	Nexn	1110046H09Rik|AA553326|NELIN	nexilin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83011452-3	chr6	83011351	83011551	+	991.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033079, intron 7 of 9)	intron (NM_033079, intron 7 of 9)	22020.0	NM_010070	13448.0	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127080234-2	chr10	127080134	127080334	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001301014, exon 1 of 18)	exon (NM_001301014, exon 1 of 18)	1327.0	NM_001033263	216439.0	Mm.336761	NM_001033263	ENSMUSG00000025422	Agap2	AGAP-2|Centg1|PIKE|cnt-g1|mKIAA0167	ArfGAP with GTPase domain, ankyrin repeat and PH domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-11929573-4	chr4	11929469	11929669	+	952.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36144.0	NM_001098231	381511.0	Mm.331489	NM_001033453	ENSMUSG00000049225	Pdp1	Gm1024|Ppm2c	pyruvate dehyrogenase phosphatase catalytic subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-77796269-4	chr18	77796157	77796357	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_152167, exon 1 of 3)	non-coding (NR_152167, exon 1 of 3)	133.0	NR_152167	619308.0	Mm.490456	NM_001033812		F830208F22Rik	-	RIKEN cDNA F830208F22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95881232-2	chr3	95881132	95881332	+	827.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001033302, exon 2 of 6)	exon (NM_001033302, exon 2 of 6)	996.0	NM_001033302	229599.0	Mm.331218	NM_001033302	ENSMUSG00000038550	Ciart	Chrono|Gm129	circadian associated repressor of transcription	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-17960198-2	chr18	17960098	17960298	+	596.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	-379208.0	NR_045374	75162.0	Mm.60874	NR_045374		4930545E07Rik	-	RIKEN cDNA 4930545E07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-35293251-1	chr12	35293151	35293351	+	601.0	f1_c57bl6.idr	Intergenic	Intergenic	-98354.0	NR_030449	751520.0		NR_030449	ENSMUSG00000076253	Mir680-3	Mirn680-3	microRNA 680-3	ncRNA	-2.18243820993087	-2.15538464093652	-2.16356586349869	-2.17028616330028	-2.18053909940952	-2.15361173587851	-2.16171381403791	-2.0403552525549	0.759018020146679	0.829933115115583	1
Merged-chr7-101918161-4	chr7	101917962	101918162	+	782.049988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162974, intron 2 of 3)	intron (NM_001162974, intron 2 of 3)	3163.0	NM_001357584	69358.0	Mm.214841	NM_027053	ENSMUSG00000064307	Lrrc51	1700008D07Rik|Lrtomt	leucine rich repeat containing 51	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-66277117-4	chr14	66277010	66277210	+	988.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	3942.0	NM_001162366	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-79824577-4	chr10	79824458	79824658	+	927.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030218, intron 1 of 4)	intron (NM_030218, intron 1 of 4)	3537.0	NM_030218	78906.0	Mm.33087	NM_030218	ENSMUSG00000035852	Misp	9130017N09Rik	mitotic spindle positioning	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150061035-4	chr4	150060935	150061135	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7419.0	NR_029751	723848.0		NR_029751	ENSMUSG00000065493	Mir34a	Mirn34a|mir-34a|mmu-mir-34a	microRNA 34a	ncRNA	5.98016147958465	6.23381989115224	5.56849225088636	7.00021664836469	7.8572646643266	7.35502646457108	7.32935818150487	7.38943011671667	1.27294144449424	2.89023644256203e-07	2.25175693752333e-05
Merged-chr19-6969802-4	chr19	6969719	6969919	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008874)	promoter-TSS (NM_008874)	-5.0	NM_001290349	18797.0	Mm.273204	NM_008874	ENSMUSG00000024960	Plcb3	mKIAA4098	phospholipase C, beta 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-87527587-4	chr11	87527481	87527681	+	987.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199293, intron 18 of 30)	RMER1C|Other|Other	-50808.0	NM_001361936	18952.0	Mm.2214	NM_011129	ENSMUSG00000020486	Sept4	ARTS|Bh5|Pnutl2	septin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-60511566-3	chr3	60511439	60511639	+	884.7333369999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253711, intron 1 of 7)	intron (NM_001253711, intron 1 of 7)	10360.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	1.16787513270007	0.744711037675493	0.368422508410923	0.534919827535227	1.0341838171516	0.377979531444706	0.3701471979765	0.538213453455626	-0.687871607529838	0.695601036600741	1
Merged-chr17-87672423-4	chr17	87672282	87672482	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008628)	promoter-TSS (NM_008628)	-175.0	NM_008628	17685.0	Mm.4619	NM_008628	ENSMUSG00000024151	Msh2	AI788990	mutS homolog 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-62516043-2	chr4	62515943	62516143	+	732.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008525, intron 1 of 11)	intron (NM_008525, intron 1 of 11)	3866.0	NM_001276446	17025.0	Mm.6988	NM_008525	ENSMUSG00000028393	Alad	ALADH|Lv	aminolevulinate, delta-, dehydratase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-25549639-4	chr2	25549542	25549742	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2702.0	NM_009422	22030.0	Mm.3399	NM_009422	ENSMUSG00000026942	Traf2	AI325259	TNF receptor-associated factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-20651940-4	chr9	20651824	20652024	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023371)	promoter-TSS (NM_023371)	-206.0	NM_023371	23988.0	Mm.7906	NM_023371	ENSMUSG00000032171	Pin1	0610025L01Rik|D9Bwg1161e	protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98412576-3	chr11	98412439	98412639	+	699.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001003817)	promoter-TSS (NM_001003817)	55.0	NM_001003817	13866.0	Mm.290822	NM_001003817	ENSMUSG00000062312	Erbb2	Erbb-2|HER-2|HER2|Neu|c-erbB2|c-neu|l11Jus8|mKIAA3023	erb-b2 receptor tyrosine kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-60749997-2	chr13	60749897	60750097	+	862.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 21 of 26)	intron (NM_134062, intron 21 of 26)	36367.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24416068-2	chr17	24415976	24416176	+	590.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357626, intron 2 of 8)	B1_Mur4|SINE|Alu	1401.0	NM_001080128	19826.0	Mm.1951	NM_009070	ENSMUSG00000034681	Rnps1	-	ribonucleic acid binding protein S1	protein-coding	-0.807465832515937	-0.168667225062301	-0.800678699263429	-0.803230222233041	-0.806835779828811	-0.795060030555799	-0.7999492982633	-0.486090777701658	-1.19298801094455	0.690773318530889	1
Merged-chr3-121329778-4	chr3	121329700	121329900	+	779.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155539, intron 2 of 2)	intron (NR_155539, intron 2 of 2)	38060.0	NM_024178	66789.0	Mm.269881	NM_024178	ENSMUSG00000039887	Alg14	5430428G01Rik|AI854024	asparagine-linked glycosylation 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-81351210-3	chr13	81351109	81351309	+	871.3777470000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 83 of 89)	Lx9|LINE|L1	281935.0	NM_054053	110789.0	Mm.288694	NM_054053	ENSMUSG00000069170	Adgrv1	Frings|Gpr98|Mass1|Mgr1|VLGR1	adhesion G protein-coupled receptor V1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-30391389-2	chr16	30391289	30391489	+	836.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2859.0	NM_001128096	224088.0	Mm.8924	NM_001128094	ENSMUSG00000022533	Atp13a3	AU022875|Gm1745|Gm541|Gm542	ATPase type 13A3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-34167182-4	chr10	34167091	34167291	+	964.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172508, intron 2 of 5)	MLT1C|LTR|ERVL-MaLR	-39219.0	NM_175449	215900.0	Mm.34479	NM_175449	ENSMUSG00000046031	Fam26f	A630077B13Rik|Calhm6	family with sequence similarity 26, member F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-41587367-5	chr10	41587222	41587422	+	970.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358562, intron 32 of 47)	intron (NM_001358562, intron 32 of 47)	19306.0	NR_045341	70538.0	Mm.399807	NR_045341	ENSMUSG00000091370	5730435O14Rik	-	RIKEN cDNA 5730435O14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-11166715-4	chr4	11166601	11166801	+	802.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021897, intron 3 of 3)	B3|SINE|B2	10260.0	NM_021897	60599.0	Mm.393018	NM_021897	ENSMUSG00000028211	Trp53inp1	2700057G22Rik|SIP|SIP18|SIP27|Stinp|Teap|p53DINP1	transformation related protein 53 inducible nuclear protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-26345245-3	chr8	26345113	26345313	+	821.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	187044.0	NM_199042	73754.0	Mm.383241	NM_199042	ENSMUSG00000037214	Thap1	4833431A01Rik|AW490810	THAP domain containing, apoptosis associated protein 1	protein-coding	2.80471169180374	4.31195115364785	2.82079922175471	2.44779414705974	3.86919464527844	3.19445446140416	3.53432323980719	2.09039589672822	0.00215933701008878	0.997606585069654	0.999291731561454
Merged-chr14-56576633-6	chr14	56576530	56576730	+	953.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145978, intron 1 of 34)	intron (NM_001145978, intron 1 of 34)	1011.0	NM_001145978	328417.0	Mm.379357	NM_001145978	ENSMUSG00000054509	Parp4	Adprtl1|C030027K23Rik|E230037B21Rik|Gm743|PARPL|PH5P|VAULT3|VPARP|p193	poly (ADP-ribose) polymerase family, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-138193408-2	chr1	138193308	138193508	+	652.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-18103.0	NM_001268286	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-61930845-4	chr11	61930728	61930928	+	923.3250119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019921)	promoter-TSS (NM_019921)	-571.0	NM_019921	56697.0	Mm.274404	NM_019921	ENSMUSG00000047804	Akap10	1500031L16Rik|B130049N18Rik|D-AKAP-2|D-AKAP2|PRKA10	A kinase (PRKA) anchor protein 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-149049051-1	chr4	149048951	149049151	+	679.0	f0_balb.idr	intron (NM_019781, intron 2 of 8)	intron (NM_019781, intron 2 of 8)	50761.0	NM_019781	56273.0	Mm.184172	NM_019781	ENSMUSG00000028975	Pex14	Pex14p|R75137	peroxisomal biogenesis factor 14	protein-coding	0.711851966753748	1.67372964539118	0.945721789574646	1.45247306882469	0.888982196205301	0.755091144778818	1.40320356020367	1.35237371632166	-0.498656775462809	0.725521670310795	0.998431161219273
Merged-chr6-51556776-4	chr6	51556667	51556867	+	982.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361577, intron 1 of 6)	L1MB2|LINE|L1	11474.0	NM_001361577	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-13645588-2	chr8	13645488	13645688	+	545.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 1 of 23)	intron (NM_009025, intron 1 of 23)	31999.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-25497984-2	chr14	25497884	25498084	+	629.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	-36455.0	NR_037236	100526533.0		NR_037236	ENSMUSG00000093081	Mir3075	mir-3075|mmu-mir-3075	microRNA 3075	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71527283-3	chr8	71527127	71527327	+	680.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10210.0	NM_198095	69550.0	Mm.260325	NM_198095	ENSMUSG00000046718	Bst2	2310015I10Rik|Bst-2|C87040|CD317|DAMP-1|GREG	bone marrow stromal cell antigen 2	protein-coding	1.77753202667026	2.26835794393379	2.77641934868145	1.56569553577828	2.21141963865157	1.18504380681218	2.2048978100986	1.13125381261924	-0.958657186375526	0.380319548121343	0.872111558853884
Merged-chr7-19458213-4	chr7	19458159	19458359	+	960.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172279, intron 1 of 16)	CpG	235.0	NM_172279	232944.0	Mm.260504	NM_172279	ENSMUSG00000030397	Mark4	2410090P21Rik|C79806|Markl1	MAP/microtubule affinity regulating kinase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-86541787-3	chr4	86541695	86541895	+	961.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081096, intron 1 of 3)	intron (NM_001081096, intron 1 of 3)	16508.0	NM_001081096	75811.0	Mm.56451	NM_001081096	ENSMUSG00000028492	Saxo1	4930500O09Rik|Fam154a	stabilizer of axonemal microtubules 1	protein-coding	0.935718291954603	1.00136533241301	1.83451176505519	0.964093824905026	1.88690042190288	1.78997265333497	2.15668953861483	1.89557956089372	2.29050533459112	0.0694015571889486	0.395509760838983
Merged-chr4-134128372-3	chr4	134128271	134128471	+	849.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080559, intron 1 of 2)	intron (NM_080559, intron 1 of 2)	382.0	NM_080559	73723.0	Mm.22240	NM_080559	ENSMUSG00000028843	Sh3bgrl3	1110004L05Rik|AU022188	SH3 domain binding glutamic acid-rich protein-like 3	protein-coding	0.757084010796674	1.53361522803588	0.7894848271308	1.81561653252269	1.10167807259876	0.808118799095592	1.71202585519789	1.4334516562293	-0.0311961667351761	0.982645188933358	0.998431161219273
Merged-chr15-101977534-4	chr15	101977429	101977629	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-23242.0	NM_212487	332131.0	Mm.325105	NM_212487	ENSMUSG00000050463	Krt78	2310030B04Rik|Kb40	keratin 78	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114790384-2	chr11	114790284	114790484	+	743.75	f1_balb.idr|f1_c57bl6.idr	TTS (NM_028055)	TTS (NM_028055)	5508.0	NM_028055	72014.0	Mm.38347	NM_028055	ENSMUSG00000000202	Btbd17	1500005I02Rik|Tango10a	BTB (POZ) domain containing 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-70854211-3	chr17	70854132	70854332	+	876.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164074)	promoter-TSS (NM_001164074)	-700.0	NM_001164074	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-32333857-2	chr17	32333757	32333957	+	930.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_017476, intron 9 of 13)	intron (NM_017476, intron 9 of 13)	-12619.0	NR_131218	56399.0	Mm.328945	NM_019774	ENSMUSG00000024045	Akap8	1200016A02Rik|AA673585|AKAP-8|AKAP95|AU015639	A kinase (PRKA) anchor protein 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-23874777-4	chr18	23874701	23874901	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162941, intron 5 of 7)	intron (NM_001162941, intron 5 of 7)	70831.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-75755474-2	chr15	75755374	75755574	+	759.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172121, intron 11 of 11)	intron (NM_172121, intron 11 of 11)	-7552.0	NM_194350	378435.0	Mm.309589	NM_194350	ENSMUSG00000047591	Mafa	RIPE3b1	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein A (avian)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97805958-3	chr6	97805856	97806056	+	674.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1102.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-60143258-3	chr11	60143155	60143355	+	936.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037764, intron 1 of 4)	MIR3|SINE|MIR	3173.0	NM_001037764	19377.0	Mm.296366	NM_009021	ENSMUSG00000062115	Rai1	Gt1	retinoic acid induced 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-73952382-4	chr17	73952210	73952410	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2114.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-14652962-3	chr8	14652887	14653087	+	799.083313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172910, intron 4 of 15)	intron (NM_172910, intron 4 of 15)	-235549.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	2.28848293866054	2.67512982037215	2.32708658350271	1.80910842920883	1.00908339741956	1.10006144937764	1.07186803798291	1.94996089892799	-2.74310522939349	0.0185024815699364	0.170152867048618
Merged-chr3-36442558-2	chr3	36442458	36442658	+	806.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32966.0	NR_105976	102466786.0		NR_105976	ENSMUSG00000098808	Mir7009	Gm27472|mmu-mir-7009	microRNA 7009	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-107893227-2	chr13	107893127	107893327	+	959.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2c|LINE|L2	-3163.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-8736896-2	chr10	8736796	8736996	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 16 of 19)	intron (NM_175155, intron 16 of 19)	149174.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-84704327-2	chr13	84704227	84704427	+	562.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	482031.0	NM_175187	72745.0	Mm.295063	NM_175187	ENSMUSG00000035762	Tmem161b	2810446P07Rik|AI843389	transmembrane protein 161B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-73039291-2	chr17	73039195	73039395	+	952.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68690.0	NM_001177968	225010.0	Mm.329194	NM_001081071	ENSMUSG00000054469	Lclat1	AI181996|Agpat8|Alcat1|Gm91|Lycat	lysocardiolipin acyltransferase 1	protein-coding	1.17664639326501	1.80463448935188	1.53559165375511	0.739594733892062	1.05563513604696	0.767399090058863	0.753524170529018	1.59307590403061	-1.0600952942142	0.464631543719187	0.922521920152562
Merged-chr9-66361931-4	chr9	66361816	66362016	+	810.720825	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145617, intron 1 of 77)	RSINE1|SINE|B4	11466.0	NM_145617	235439.0	Mm.244179	NM_145617	ENSMUSG00000038664	Herc1	2810449H11Rik|B230218H07|D130015N03Rik|tbl	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-144200705-4	chr1	144200609	144200809	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23337.0	NM_153171	246709.0	Mm.38271	NM_153171	ENSMUSG00000051079	Rgs13	-	regulator of G-protein signaling 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-67450149-3	chr18	67450017	67450217	+	757.983337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027130)	promoter-TSS (NM_027130)	-981.0	NM_027130	69597.0	Mm.426052	NM_027130	ENSMUSG00000024527	Afg3l2	2310036I02Rik|AW260507|Emv66|par	AFG3-like AAA ATPase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19155913-2	chr7	19155813	19156013	+	599.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6075.0	NM_026943	107686.0	Mm.29135	NM_026943	ENSMUSG00000040824	Snrpd2	1810009A06Rik|SMD2	small nuclear ribonucleoprotein D2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-65351772-4	chr3	65351663	65351863	+	905.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357358, intron 8 of 13)	intron (NM_001357358, intron 8 of 13)	-2334.0	NR_040390	319798.0	Mm.445698	NR_040390		A730090N16Rik	-	RIKEN cDNA A730090N16 gene	ncRNA	3.07644413204906	3.64461552738602	1.31436131919937	1.7956586343346	3.03839000918575	3.41669782357407	2.08044851109947	1.27980297323748	-0.147130659500426	0.924199274077221	0.998431161219273
Merged-chr4-9669231-4	chr4	9669138	9669338	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023066)	promoter-TSS (NM_023066)	-76.0	NM_001177849	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25086992-2	chr7	25086892	25087092	+	608.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	10183.0	NR_105855	102465968.0		NR_105855	ENSMUSG00000098441	Mir6537	Gm27808|mmu-mir-6537	microRNA 6537	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-36636154-2	chr16	36636054	36636254	+	603.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019388, intron 1 of 7)	intron (NM_019388, intron 1 of 7)	29923.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-11068054-2	chr16	11067954	11068154	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009223, intron 1 of 1)	intron (NM_009223, intron 1 of 1)	1756.0	NM_009223	20621.0	Mm.325800	NM_009223	ENSMUSG00000037972	Snn	2810407J07Rik|AI848521|AW547286	stannin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52981077-6	chr13	52980926	52981126	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017373)	promoter-TSS (NM_017373)	13.0	NM_017373	18030.0	Mm.136604	NM_017373	ENSMUSG00000056749	Nfil3	AV225605|E4BP4	nuclear factor, interleukin 3, regulated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-31742336-4	chr2	31742230	31742430	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001283047, intron 2 of 11)	intron (NM_001283047, intron 2 of 11)	-17609.0	NM_009594	11350.0	Mm.1318	NM_009594	ENSMUSG00000026842	Abl1	AI325092|Abl|E430008G22Rik|c-Abl	c-abl oncogene 1, non-receptor tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-85051969-2	chr16	85051869	85052069	+	791.700012	f1_balb.idr|f1_c57bl6.idr	intron (NM_001198825, intron 6 of 15)	MIRb|SINE|MIR	79758.0	NR_045889	100038614.0	Mm.441351	NR_045889	ENSMUSG00000115518	Gm10791	-	predicted gene 10791	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-51918455-2	chr15	51918355	51918555	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41014.0	NM_030132	78581.0	Mm.176347	NM_030132	ENSMUSG00000022313	Utp23	1700010I21Rik|AI662478|BB238373|D530033C11Rik	UTP23 small subunit processome component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-52229844-3	chr9	52229746	52229946	+	606.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61735.0	NM_001162921	244871.0	Mm.295686	NM_001162921	ENSMUSG00000035164	Zc3h12c	A230108E06|C230027N18Rik|mKIAA1726	zinc finger CCCH type containing 12C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-84175859-4	chr12	84175767	84175967	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163501, intron 1 of 12)	intron (NM_001163501, intron 1 of 12)	18148.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-13423637-4	chr15	13423520	13423720	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-249945.0	NM_007666	12563.0	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-9463809-5	chr15	9463708	9463908	+	972.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029341, intron 4 of 4)	intron (NM_029341, intron 4 of 4)	27780.0	NM_029341	75568.0	Mm.82143	NM_029341	ENSMUSG00000039676	Capsl	1700028N11Rik|AW125205	calcyphosine-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-134456801-4	chr5	134456707	134456907	+	998.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001244936)	promoter-TSS (NM_001244936)	-91.0	NM_001081464	57080.0	Mm.332735	NM_020331	ENSMUSG00000023079	Gtf2ird1	1700012P16Rik|BEN|Cream1|ESTM9|GTF3|Gtf2il|MusTRD1|Tg(Alb1-Myc)166.8Sst|WBSCR11|X83320	general transcription factor II I repeat domain-containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-138326817-2	chr1	138326733	138326933	+	569.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53095.0	NM_177397	338375.0	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-23787806-2	chr10	23787706	23787906	+	805.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011295)	promoter-TSS (NM_011295)	-597.0	NM_011295	20042.0	Mm.371846	NM_011295	ENSMUSG00000061983	Rps12	-	ribosomal protein S12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-121817624-2	chr5	121817524	121817724	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008507, exon 8 of 8)	3' UTR (NM_008507, exon 8 of 8)	1649.0	NR_105998	102465624.0		NR_105998	ENSMUSG00000099063	Mir7031	Gm27859|mmu-mir-7031	microRNA 7031	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-34994744-3	chr13	34994612	34994812	+	892.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_073427)	promoter-TSS (NR_073427)	-568.0	NM_001110331	23986.0	Mm.491141	NM_011868	ENSMUSG00000021417	Eci2	Acbd2|Drs1|Hca88|Peci	enoyl-Coenzyme A delta isomerase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102730554-4	chr12	102730460	102730660	+	955.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1O|LTR|ERVL-MaLR	13101.0	NM_001142937	64113.0	Mm.291222	NM_022323	ENSMUSG00000096458	Moap1	AA987038|Map-1|Pnma4	modulator of apoptosis 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-129434391-4	chr6	129434282	129434482	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175526, intron 3 of 5)	intron (NM_175526, intron 3 of 5)	17618.0	NM_001347475	243653.0	Mm.131289	NM_175526	ENSMUSG00000033082	Clec1a	5930406N14Rik	C-type lectin domain family 1, member a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88242705-4	chr3	88242628	88242828	+	832.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_021375)	TTS (NM_021375)	11956.0	NM_021375	58176.0	Mm.103777	NM_021375	ENSMUSG00000104445	Rhbg	-	Rhesus blood group-associated B glycoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-41386071-4	chr10	41385958	41386158	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MEc|LINE|L1	-64300.0	NM_001277229	268294.0	Mm.258475	NM_153398	ENSMUSG00000019826	Zbtb24	BC055367|Bif1|Bsg1|ZNF450	zinc finger and BTB domain containing 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-7221160-2	chr9	7221060	7221260	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36655.0	NM_029775	76863.0	Mm.27293	NM_029775	ENSMUSG00000032002	Dcun1d5	3110001A18Rik|4833420K19Rik|AW060460|D430047L21Rik	DCN1, defective in cullin neddylation 1, domain containing 5 (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56771794-2	chr17	56771694	56771894	+	602.833313	f1_balb.idr|f1_c57bl6.idr	exon (NM_001195673, exon 3 of 3)	exon (NM_001195673, exon 3 of 3)	1518.0	NM_001195673	100504446.0	Mm.46157	NM_001195673	ENSMUSG00000090273	Prr22	Gm546	proline rich 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-80131276-2	chr12	80131176	80131376	+	637.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_033514, intron 2 of 2)	URR1B|DNA|hAT-Charlie	1568.0	NR_033514	69548.0	Mm.269712	NR_033514		2310015A10Rik	5330419I17Rik	RIKEN cDNA 2310015A10 gene	ncRNA	-2.18308165884198	-2.15547475440471	-2.16382331017202	-2.1706810624505	-2.18114370519566	-2.15366558754311	-2.03057248461154	-2.16945352807143	0.759018020146679	0.829933115115583	1
Merged-chr11-64435222-4	chr11	64435125	64435325	+	929.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178870)	promoter-TSS (NM_178870)	-107.0	NM_178870	15478.0	Mm.340214	NM_178870	ENSMUSG00000047759	Hs3st3a1	3Ost3a|Hs3st3a	heparan sulfate (glucosamine) 3-O-sulfotransferase 3A1	protein-coding	-0.177271013706531	1.07524116616226	0.0555622671028694	0.203255399523563	-0.175777886254249	-0.152202964654667	-0.159753360609956	-0.166286885538626	-4.18703868795429	0.0518846718339789	1
Merged-chr1-60918580-1	chr1	60918480	60918680	+	630.0	f1_balb.idr	Intergenic	Intergenic	9555.0	NM_001281976	12477.0	Mm.390	NM_009843	ENSMUSG00000026011	Ctla4	Cd152|Ctla-4|Ly-56	cytotoxic T-lymphocyte-associated protein 4	protein-coding	0.115342165561142	0.181422745128779	0.159960911666327	-0.0202250442573703	0.244638427472022	-0.00962349838936655	-0.0149584562447438	0.782028537888652	1.50156674163506	0.456608501531781	1
Merged-chr3-88175968-2	chr3	88175868	88176068	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045997, intron 1 of 2)	intron (NR_045997, intron 1 of 2)	1817.0	NR_045997	76642.0	Mm.424420	NR_045997	ENSMUSG00000096935	1700113A16Rik	2210408E11Rik|AA408983	RIKEN cDNA 1700113A16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-120903664-4	chr6	120903607	120903807	+	932.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007544, intron 1 of 5)	intron (NM_007544, intron 1 of 5)	13117.0	NM_007544	12122.0	Mm.235081	NM_007544	ENSMUSG00000004446	Bid	2700049M22Rik|AI875481|AU022477	BH3 interacting domain death agonist	protein-coding	1.60115728696614	1.09152678073503	2.0655854197546	1.85977585645207	2.6089813710912	1.09905886773145	3.25055106722131	1.30525921250289	1.53142865751408	0.168266024962274	0.634264819554251
Merged-chr1-88652800-4	chr1	88652714	88652914	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	49377.0	NM_177305	320982.0	Mm.27968	NM_177305	ENSMUSG00000049866	Arl4c	A630084M22Rik|Arl7|LAK	ADP-ribosylation factor-like 4C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-126110756-4	chr4	126110714	126110914	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028800, intron 1 of 10)	intron (NM_028800, intron 1 of 10)	6857.0	NM_001145827	74178.0	Mm.440269	NM_028800	ENSMUSG00000042608	Stk40	2310004N11Rik|AI428792	serine/threonine kinase 40	protein-coding	3.45411971223772	3.79003749338417	3.21815229536997	3.40704990482653	3.54922234435079	4.50595165620512	3.44399046948495	3.24285850138748	0.444773956505188	0.415464099630258	0.896676881011847
Merged-chr2-180118456-2	chr2	180118356	180118556	+	726.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144500)	promoter-TSS (NM_144500)	-910.0	NM_144500	228983.0	Mm.253578	NM_144500	ENSMUSG00000039050	Osbpl2	C130070J12Rik|ORP-2|Orp2|mKIAA0772	oxysterol binding protein-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-9706734-2	chr10	9706635	9706835	+	755.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22013.0	NR_038036	620417.0	Mm.378085	NR_038036	ENSMUSG00000111901	Gm6150	-	predicted gene 6150	ncRNA	1.32810408965474	2.41155160449942	1.90840995680253	0.960246704934779	2.47642152836379	1.01249996474047	2.04520887114803	0.963914492468002	0.0675937146010519	0.957705795474288	0.998431161219273
Merged-chr7-45162334-5	chr7	45162290	45162490	+	957.93335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1531.0	NM_182993	72961.0	Mm.255631	NM_182993	ENSMUSG00000070570	Slc17a7	2900052E22Rik|AI851913|Vglut1	solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 7	protein-coding	4.67612954943266	3.54831359925916	3.92268174437693	4.0039329163515	3.58386833324649	3.67475478782581	3.806550935224	4.28640677059957	-0.343819466229446	0.475882645155412	0.927406040011522
Merged-chr18-61419907-3	chr18	61419808	61420008	+	828.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-19477.0	NM_133249	170826.0	Mm.415302	NM_133249	ENSMUSG00000033871	Ppargc1b	4631412G21Rik|Perc	peroxisome proliferative activated receptor, gamma, coactivator 1 beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-67056298-4	chr6	67056203	67056403	+	782.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040278, intron 1 of 6)	intron (NR_040278, intron 1 of 6)	-18896.0	NM_007836	13197.0	Mm.72235	NM_007836	ENSMUSG00000036390	Gadd45a	AA545191|Ddit1|GADD45	growth arrest and DNA-damage-inducible 45 alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-44723421-2	chr16	44723328	44723528	+	652.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145972)	promoter-TSS (NM_145972)	-873.0	NM_145972	212547.0	Mm.310573	NM_145972	ENSMUSG00000036208	Nepro	-	nucleolus and neural progenitor protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90572303-4	chr2	90572219	90572419	+	828.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	8328.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-120870253-4	chr7	120870126	120870326	+	995.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001267710, intron 2 of 17)	intron (NM_001267710, intron 2 of 17)	19037.0	NM_001267711	13631.0	Mm.25997	NM_007908	ENSMUSG00000035064	Eef2k	C86191|eEF-2K	eukaryotic elongation factor-2 kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-119962972-3	chr4	119962881	119963081	+	669.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010657, intron 1 of 8)	intron (NM_010657, intron 1 of 8)	148303.0	NM_010657	16656.0	Mm.302758	NM_010657	ENSMUSG00000028634	Hivep3	2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3	human immunodeficiency virus type I enhancer binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-60175341-3	chr2	60175244	60175444	+	833.866699	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34592.0	NM_020575	57438.0	Mm.260635	NM_020575	ENSMUSG00000026977	March7	Axo|Axot|Gtrgeo17	membrane-associated ring finger (C3HC4) 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141551459-2	chr4	141551370	141551570	+	926.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5308.0	NR_030695	320456.0	Mm.32859	NM_177163		B330016D10Rik	-	RIKEN cDNA B330016D10 gene	ncRNA	1.45115951879725	1.90107222425027	0.863176334627801	2.03269718474996	0.826339593659532	1.91757160498328	0.867399145146926	1.25765830450784	-1.06645735743408	0.432458384536051	0.904679012727573
Merged-chr7-122813974-4	chr7	122813872	122814072	+	992.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR19-int|LTR|ERVK	142228.0	NM_019430	54376.0	Mm.444212	NM_019430	ENSMUSG00000066189	Cacng3	-	calcium channel, voltage-dependent, gamma subunit 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-88167255-4	chr4	88167107	88167307	+	976.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081184, intron 5 of 43)	intron (NM_001081184, intron 5 of 43)	45167.0	NR_030478	735282.0		NR_030478	ENSMUSG00000070077	Mir491	Mirn491|mir-491|mmu-mir-491	microRNA 491	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-80609859-4	chr1	80609747	80609947	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175291, intron 4 of 55)	L1MA8|LINE|L1	55505.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27679916-4	chr2	27679808	27680008	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011305, intron 1 of 9)	intron (NM_011305, intron 1 of 9)	2707.0	NM_011305	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81414069-4	chr10	81413965	81414165	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026756, intron 2 of 8)	intron (NM_026756, intron 2 of 8)	2232.0	NR_106141	102465778.0		NR_106141	ENSMUSG00000105379	Mir1191b	mmu-mir-1191b	microRNA 1191b	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-14589980-2	chr10	14589880	14590080	+	598.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR72_RN|LTR|ERV1	-44944.0	NM_001002268	215798.0	Mm.440142	NM_001002268	ENSMUSG00000039116	Adgrg6	1190004A11Rik|AI449247|AW045736|DREG|Gm222|Gpr126	adhesion G protein-coupled receptor G6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-100572451-3	chr5	100572364	100572564	+	875.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_139198)	promoter-TSS (NM_139198)	-259.0	NM_139198	231507.0	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-116676244-2	chr4	116676144	116676344	+	992.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9355.0	NM_011034	18477.0	Mm.30929	NM_011034	ENSMUSG00000028691	Prdx1	MSP23|NkefA|OSF-3|OSF3|PAG|Paga|PrdxI|PrxI|TDX2|TPxA|Tdpx2|prx1	peroxiredoxin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135909163-4	chr5	135909037	135909237	+	962.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_018871, exon 2 of 2)	3' UTR (NM_018871, exon 2 of 2)	21218.0	NM_013560	15507.0	Mm.13849	NM_013560	ENSMUSG00000004951	Hspb1	27kDa|Hsp25	heat shock protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-98406545-3	chr14	98406439	98406639	+	983.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-236774.0	NM_007826	13134.0	Mm.320593	NM_007826	ENSMUSG00000055639	Dach1	Dac|Dach	dachshund family transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-43265492-4	chr6	43265376	43265576	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133674)	promoter-TSS (NM_133674)	-168.0	NM_133674	54324.0	Mm.320978	NM_133674	ENSMUSG00000033542	Arhgef5	2210412D05Rik|AA717842|AW495314|Tim1	Rho guanine nucleotide exchange factor (GEF) 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127215566-4	chr7	127215575	127215775	+	920.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_017461, exon 8 of 11)	exon (NM_017461, exon 8 of 11)	2770.0	NM_017461	54204.0	Mm.18	NM_017461	ENSMUSG00000000486	Sept1	Diff6|Pnutl3	septin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114988732-2	chr11	114988632	114988832	+	819.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_145437, intron 1 of 3)	B4A|SINE|B4	1154.0	NM_145437	217305.0	Mm.275986	NM_145437	ENSMUSG00000034641	Cd300ld	4732429D16Rik|CLM5|Cd300ld1|LMIR4|MAIR-IV|clm-5	CD300 molecule like family member d	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-136111967-2	chr5	136111867	136112067	+	765.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_133914)	TTS (NM_133914)	-4724.0	NM_011293	20022.0	Mm.4896	NM_011293	ENSMUSG00000039771	Polr2j	14.5kDa|Polr2i|Rpb11a|Rpo2-4	polymerase (RNA) II (DNA directed) polypeptide J	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-119525445-2	chr1	119525345	119525545	+	654.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146103)	promoter-TSS (NM_146103)	-709.0	NM_146103	226351.0	Mm.439806	NM_146103	ENSMUSG00000098923	Tmem185b	2500001K11Rik	transmembrane protein 185B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-73487755-3	chr2	73487631	73487831	+	936.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	-1978.0	NM_001289723	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-36876106-3	chr15	36876008	36876208	+	728.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-79179.0	NM_001253806	22631.0	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35221386-2	chr17	35221275	35221475	+	840.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_010909, intron 2 of 3)	intron (NM_010909, intron 2 of 3)	-13635.0	NM_001347351	66237.0	Mm.396107	NM_023179	ENSMUSG00000024403	Atp6v1g2	1500002D01Rik|Atp6g2|NG38|VAG2	ATPase, H+ transporting, lysosomal V1 subunit G2	protein-coding	0.941957901128704	1.2255935227407	1.37066245849301	2.07222858577264	1.82197174966733	1.58917074749561	1.19967647775342	1.72834725724616	0.378535253262182	0.754974445784483	0.998431161219273
Merged-chr11-93956379-2	chr11	93956279	93956479	+	982.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008705)	promoter-TSS (NM_008705)	-123.0	NM_008705	18103.0	Mm.1260	NM_008705	ENSMUSG00000020857	Nme2	NM23-H2|NM23B|nm23-M2	NME/NM23 nucleoside diphosphate kinase 2	protein-coding	1.04308540389034	1.38505423722022	1.60611097341631	0.674961885934157	0.651306193361634	0.715723993974963	2.44971796603751	1.11946689404061	0.812890108447088	0.567676979835938	0.962562732139494
Merged-chr2-157427944-2	chr2	157427844	157428044	+	938.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025395, intron 1 of 13)	intron (NM_001025395, intron 1 of 13)	3651.0	NM_001025395	20779.0	Mm.22845	NM_009271	ENSMUSG00000027646	Src	AW259666|pp60c-src	Rous sarcoma oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-44760757-2	chr13	44760657	44760857	+	654.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205043, intron 1 of 17)	intron (NM_001205043, intron 1 of 17)	29486.0	NM_001205043	16468.0	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-34869671-4	chr6	34869565	34869765	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197986, intron 1 of 1)	intron (NM_197986, intron 1 of 1)	6519.0	NM_197986	68487.0	Mm.248440	NM_197986	ENSMUSG00000057137	Tmem140	1110007F12Rik	transmembrane protein 140	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-80082228-2	chr15	80082128	80082328	+	988.75	f1_balb.idr|f1_c57bl6.idr	TTS (NR_028281)	TTS (NR_028281)	678.0	NR_028281	100302600.0		NR_028281		Snord43	MBII-47	small nucleolar RNA, C/D box 43	snoRNA	0.81942649322974	0.552512120031732	0.54252753134886	1.31706026627679	0.687761915668324	0.554748626356621	1.28527482896051	1.23184559288755	0.584532035491072	0.71796682245021	0.998431161219273
Merged-chr4-136907229-1	chr4	136907129	136907329	+	550.0	f0_balb.idr	Intergenic	Intergenic	-8385.0	NM_007572	12259.0	Mm.439957	NM_007572	ENSMUSG00000036887	C1qa	AI255395|C1q	complement component 1, q subcomponent, alpha polypeptide	protein-coding	1.09345411920766	1.95423907849808	1.88657017422796	2.06254757692328	1.86674071504849	2.10203368672941	1.15198042015231	2.42453868081557	0.457808535282385	0.681832929221868	0.995882295196263
Merged-chr9-78463569-4	chr9	78463477	78463677	+	996.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026658, intron 9 of 11)	intron (NM_026658, intron 9 of 11)	15367.0	NM_026658	68291.0	Mm.291779	NM_026658	ENSMUSG00000032342	Mto1	2310039H01Rik|5730419A02Rik	mitochondrial tRNA translation optimization 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-125569962-4	chr8	125569872	125570072	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357372)	promoter-TSS (NM_001357372)	-109.0	NM_001357372	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	4.92067531185867	5.8023645992758	5.66517905479746	5.02075386789983	5.67782582726907	6.5750061469512	5.25984248902229	5.33847036172301	0.470607442275835	0.169877660802805	0.637333387839917
Merged-chr6-42296369-4	chr6	42296292	42296492	+	888.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013491, intron 7 of 22)	intron (NM_013491, intron 7 of 22)	9707.0	NM_013491	12723.0	Mm.386757	NM_013491	ENSMUSG00000029862	Clcn1	Clc-1|Clc1|SMCC1|adr|mto|myotonia|nmf355	chloride channel, voltage-sensitive 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191875092-1	chr1	191874992	191875192	+	561.0	f1_balb.idr	Intergenic	Intergenic	-31689.0	NM_009579	22782.0	Mm.9024	NM_009579	ENSMUSG00000037434	Slc30a1	AI839647|C130040I11Rik|Znt1	solute carrier family 30 (zinc transporter), member 1	protein-coding	0.746855100868477	1.33377909748256	0.943861564560567	0.915912997816081	0.875826397791991	1.34530214304359	0.628253442213461	0.621808221754543	-0.485348793862562	0.749282248410423	0.998431161219273
Merged-chr4-10920600-6	chr4	10920581	10920781	+	931.263916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	46183.0	NM_026005	67157.0	Mm.440552	NM_026005	ENSMUSG00000059482	2610301B20Rik	AI428449	RIKEN cDNA 2610301B20 gene	protein-coding	4.58267706495589	3.94147544252702	4.34084064899139	3.46708821795668	2.65771088478287	4.40651446796529	3.40838065186393	3.56999490677302	-0.705633398861657	0.196022678801659	0.67745443837728
Merged-chr18-84849906-4	chr18	84849817	84850017	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1421.0	NM_025797	109672.0	Mm.31018	NM_025797	ENSMUSG00000024646	Cyb5a	0610009N12Rik|Cyb5	cytochrome b5 type A (microsomal)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-3941145-4	chr7	3941045	3941245	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25644.0	NR_028115	18726.0	Mm.440989	NM_011090	ENSMUSG00000030427	Lilra6	7M1|Pira3	leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-34610666-3	chr6	34610631	34610831	+	767.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347100, intron 1 of 13)	MER94|DNA|hAT-Blackjack	12227.0	NM_001347100	109624.0	Mm.308134	NM_145575	ENSMUSG00000029761	Cald1	4833423D12Rik|AI195384|AV071549|AW536160|C920027I18Rik	caldesmon 1	protein-coding	2.68398588427109	1.70175888483326	1.44484948313696	1.41002848002063	1.69094309788326	2.05100272129221	2.60128805876781	1.91842237527287	0.391830503244039	0.698621553006715	0.998284579433352
Merged-chr4-141160423-3	chr4	141160334	141160534	+	852.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172518, intron 1 of 9)	intron (NM_172518, intron 1 of 9)	12512.0	NM_172518	213499.0	Mm.28865	NM_172518	ENSMUSG00000028920	Fbxo42	6720460I06Rik|mKIAA1332	F-box protein 42	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-99953127-3	chr12	99953010	99953210	+	716.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028354, intron 15 of 15)	intron (NM_028354, intron 15 of 15)	-11389.0	NM_001164426	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-88994558-3	chr11	88994494	88994694	+	729.033325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-4809.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	-1.7024385483431	-1.81249224917775	-1.82134771053534	-1.82862185015837	-1.70038292649591	-1.81057323376012	-1.81934302819017	-1.82731978264371	0.0376840119903864	0.991491645451152	1
Merged-chr5-56046658-2	chr5	56046558	56046758	+	771.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	1671261.0	NR_015588	319216.0	Mm.332387	NR_015588	ENSMUSG00000097216	4932441J04Rik	-	RIKEN cDNA 4932441J04 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-149647539-2	chr4	149647439	149647639	+	962.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_001290989, exon 18 of 18)	exon (NM_001290989, exon 18 of 18)	8028.0	NR_105990	102465983.0		NR_105990	ENSMUSG00000098580	Mir7023	Gm27912|mmu-mir-7023	microRNA 7023	ncRNA	1.46733849402105	1.76006050424446	1.70612667639462	1.99137679741315	1.60149792497766	1.77201370339438	1.7181521566011	2.00116075228813	0.120405612760762	0.905230845404267	0.998431161219273
Merged-chr10-8787844-2	chr10	8787744	8787944	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 5 of 19)	intron (NM_175155, intron 5 of 19)	98226.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56260189-2	chr17	56260089	56260289	+	676.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010192, exon 1 of 1)	3' UTR (NM_010192, exon 1 of 1)	3396.0	NM_010192	14154.0	Mm.290813	NM_010192	ENSMUSG00000043683	Fem1a	AW611390|Fem1aa	feminization 1 homolog a (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-95515672-3	chr10	95515575	95515775	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080560, intron 1 of 3)	CpG	513.0	NM_080560	93765.0	Mm.371667	NM_080560	ENSMUSG00000074781	Ube2n	1500026J17Rik|AL022654|BB101821|UBC13	ubiquitin-conjugating enzyme E2N	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-139268018-1	chr1	139267918	139268118	+	547.0	f1_c57bl6.idr	intron (NM_133239, intron 5 of 11)	intron (NM_133239, intron 5 of 11)	109058.0	NM_133239	170788.0	Mm.95700	NM_133239	ENSMUSG00000063681	Crb1	7530426H14Rik|A930008G09Rik	crumbs family member 1, photoreceptor morphogenesis associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-79238329-2	chr3	79238229	79238429	+	959.333374	f1_balb.idr|f1_c57bl6.idr	intron (NR_045502, intron 1 of 2)	intron (NR_045502, intron 1 of 2)	25410.0	NR_045502	70924.0	Mm.444622	NR_045502	ENSMUSG00000104585	4921511C10Rik	-	RIKEN cDNA 4921511C10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-137297486-1	chr5	137297386	137297586	+	583.0	f1_c57bl6.idr	promoter-TSS (NR_106003)	promoter-TSS (NR_106003)	-798.0	NR_106003	102465627.0		NR_106003	ENSMUSG00000098624	Mir7036	Gm27973|mmu-mir-7036|mmu-mir-7036a	microRNA 7036	ncRNA	-1.8441302108003	-1.81350723920635	-1.82276787857624	-1.83037484348242	-1.84198053481629	-1.6657882855277	-1.67495933831482	-1.8290132004012	1.61115487639342	0.646990671328599	1
Merged-chr7-44753020-4	chr7	44752912	44753112	+	731.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133945, intron 2 of 14)	ORR1E|LTR|ERVL-MaLR	4383.0	NM_133945	101568.0	Mm.28816	NM_133945	ENSMUSG00000002205	Vrk3	AI428238	vaccinia related kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91650147-2	chr16	91650047	91650247	+	591.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019973, intron 1 of 4)	intron (NM_019973, intron 1 of 4)	2323.0	NM_178880	20658.0	Mm.46401	NM_019973	ENSMUSG00000022961	Son	2900011L12Rik|AA409051|AU067731|C81487|mKIAA1019|nrebp	Son DNA binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-128978704-2	chr4	128978604	128978804	+	593.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14520.0	NM_016895	11637.0	Mm.29460	NM_016895	ENSMUSG00000028792	Ak2	Ak-2|D4Ertd220e	adenylate kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33693677-3	chr16	33693550	33693750	+	737.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175256, intron 1 of 14)	MTD|LTR|ERVL-MaLR	9184.0	NM_175256	77446.0	Mm.245741	NM_172934	ENSMUSG00000075254	Heg1	4632417D23Rik|5530401I02Rik|9530025L16Rik|BC038614|Gm629	heart development protein with EGF-like domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-62199136-4	chr10	62199018	62199218	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197996, intron 3 of 7)	intron (NM_197996, intron 3 of 7)	-4891.0	NR_106122	102465767.0		NR_106122	ENSMUSG00000099185	Mir7662	Gm27876|mmu-mir-7662	microRNA 7662	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-140123329-2	chr7	140123229	140123429	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2328.0	NM_001346725	212503.0	Mm.486735	NM_153783	ENSMUSG00000025464	Paox	2410012F02Rik|AI118225|Pao	polyamine oxidase (exo-N4-amino)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-87006633-3	chr1	87006530	87006730	+	798.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001172157, intron 14 of 21)	intron (NM_001172157, intron 14 of 21)	83298.0	NM_007433	11650.0	Mm.195224	NM_007433	ENSMUSG00000026246	Alppl2	Akp5|C77216|D1Ertd816e|EAP	alkaline phosphatase, placental-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-155298786-2	chr3	155298686	155298886	+	651.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CTGTG)n|Simple_repeat|Simple_repeat	205352.0	NM_028938	74435.0	Mm.195711	NM_028938	ENSMUSG00000028182	Lrriq3	4930438B07Rik|4930511J15Rik|4933403H06Rik|BB020367|Lrrc44	leucine-rich repeats and IQ motif containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-54983324-2	chr12	54983222	54983422	+	628.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013815, intron 2 of 26)	intron (NM_013815, intron 2 of 26)	3014.0	NM_013815	217578.0	Mm.479583	NM_013815	ENSMUSG00000035021	Baz1a	Acf1|B930060C03|BC065123|Gtl5|Wcrf180|cbp146	bromodomain adjacent to zinc finger domain 1A	protein-coding	-2.18233058068552	-2.15536956715525	-2.16352280018114	-2.04193253143548	-2.18043796738662	-2.15360272754651	-2.16167708693786	-2.16902129354933	-0.683654500252594	0.846597994014493	1
Merged-chr2-158107460-4	chr2	158107352	158107552	+	829.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15655.0	NR_040609	72340.0	Mm.443395	NR_040609	ENSMUSG00000100860	2010009K17Rik	-	RIKEN cDNA 2010009K17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-129532322-4	chr3	129532235	129532435	+	920.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_130450)	promoter-TSS (NM_130450)	-51.0	NM_130450	170439.0	Mm.314113	NM_130450	ENSMUSG00000041220	Elovl6	C77826|FAE|LCE	ELOVL family member 6, elongation of long chain fatty acids (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-97773361-4	chr4	97773255	97773455	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122952, intron 1 of 10)	intron (NM_001122952, intron 1 of 10)	-4271.0	NM_001122953	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-10080494-4	chr2	10080370	10080570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025280)	promoter-TSS (NM_025280)	40.0	NM_020615	11949.0	Mm.12677	NM_020615	ENSMUSG00000025781	Atp5c1	1700094F02Rik|Atp5f1c	ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-10109865-4	chr13	10109783	10109983	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033269, intron 3 of 4)	intron (NM_033269, intron 3 of 4)	250920.0	NM_033269	12671.0	Mm.342315	NM_033269	ENSMUSG00000046159	Chrm3	Chrm-3|M3|M3R	cholinergic receptor, muscarinic 3, cardiac	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-67112858-3	chr11	67112735	67112935	+	757.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_038055, exon 5 of 5)	non-coding (NR_038055, exon 5 of 5)	7245.0	NR_038055	74184.0	Mm.162554	NR_038055	ENSMUSG00000087410	2310065F04Rik	linc-Myh	RIKEN cDNA 2310065F04 gene	ncRNA	1.68387752898218	2.0426519078736	2.45345283753166	1.04389918061755	1.81761680581541	1.09568948368097	2.47426410908501	1.28601363425731	-0.29300491260273	0.80223218119672	0.998431161219273
Merged-chr14-120303126-3	chr14	120303015	120303215	+	981.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360380, intron 1 of 7)	intron (NM_001360380, intron 1 of 7)	-3337.0	NM_001360376	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-61653220-4	chr11	61653119	61653319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027817)	promoter-TSS (NM_027817)	-102.0	NM_027817	71520.0	Mm.202760	NM_027817	ENSMUSG00000004837	Grap	8430435N19Rik|BB233594	GRB2-related adaptor protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-86943793-1	chr4	86943693	86943893	+	684.0	f1_balb.idr	Intergenic	Intergenic	69379.0	NM_139306	230379.0	Mm.45019	NM_139306	ENSMUSG00000038007	Acer2	2410116I05Rik|Asah3l|CRG-L1|maCER2	alkaline ceramidase 2	protein-coding	0.852718349982146	0.935511759048653	2.1812085779204	0.888926656261709	1.81193917937228	2.62505523116951	1.18213673596097	1.9206885867377	1.66754778575249	0.195352232267472	0.676106562330324
Merged-chr4-100441972-2	chr4	100441872	100442072	+	544.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_013845, exon 9 of 9)	exon (NM_013845, exon 9 of 9)	-36895.0	NM_001033773	381534.0	Mm.318133	NM_001033773	ENSMUSG00000069733	Ube2u	-	ubiquitin-conjugating enzyme E2U (putative)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-81307757-4	chr7	81307628	81307828	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008803, intron 9 of 21)	intron (NM_008803, intron 9 of 21)	37506.0	NM_009092	20068.0	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-83668751-2	chr7	83668651	83668851	+	816.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360088, intron 9 of 18)	intron (NM_001360088, intron 9 of 18)	-13256.0	NM_001360089	16170.0	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3388267-2	chr19	3388167	3388367	+	990.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039658)	promoter-TSS (NM_001039658)	-590.0	NM_001039658	17771.0	Mm.209941	NM_010841	ENSMUSG00000024905	Tesmin	Mtl5	testis expressed metallothionein like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-48816444-4	chr11	48816314	48816514	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_145377, exon 1 of 6)	exon (NM_145377, exon 1 of 6)	977.0	NM_145377	211007.0	Mm.794	NM_145377	ENSMUSG00000040365	Trim41	AW552703|BC020156|R75223|RINCK	tripartite motif-containing 41	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-67829630-2	chr5	67829530	67829730	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038999, intron 1 of 36)	intron (NM_001038999, intron 1 of 36)	17801.0	NM_009727	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-99104680-1	chr14	99104580	99104780	+	1000.0	f0_balb.idr	intron (NM_029320, intron 2 of 17)	intron (NM_029320, intron 2 of 17)	-4910.0	NR_153390	72662.0	Mm.163339	NM_028315	ENSMUSG00000033166	Dis3	2810028N01Rik	DIS3 homolog, exosome endoribonuclease and 3'-5' exoribonuclease	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-3169639-2	chr11	3169550	3169750	+	1000.0	f0_balb.idr|f1_balb.idr	intron (NM_030207, intron 7 of 32)	MTC|LTR|ERVL-MaLR	23813.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53159903-4	chr4	53159821	53160021	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013454)	promoter-TSS (NM_013454)	-26.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28523213-4	chr17	28523112	28523312	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-7649.0	NM_026290	67645.0	Mm.46170	NM_026290	ENSMUSG00000024223	Armc12	4930511I11Rik|AV041658	armadillo repeat containing 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-66137424-4	chr5	66137359	66137559	+	994.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127382, intron 2 of 7)	intron (NM_001127382, intron 2 of 7)	13519.0	NM_001291226	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	4.90583978749353	3.87539462453432	4.922060826655	4.27435892135864	3.38614892653326	3.61978006775667	4.19933618736761	3.88160234674414	-1.02147175362876	0.0247784160592106	0.20809013243939
Merged-chr16-45298145-1	chr16	45298045	45298245	+	641.0	f1_balb.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	73808.0	NM_177584	208154.0	Mm.38199	NM_177584	ENSMUSG00000052013	Btla	A630002H24	B and T lymphocyte associated	protein-coding	-2.18138529563533	-2.15523716995652	-2.1631445789866	-2.16963996020037	-2.05513010215571	-2.15352360143315	-2.16135451490766	-2.16847729006863	0.759018020146679	0.829933115115583	1
Merged-chr8-71469108-4	chr8	71469027	71469227	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001294259)	promoter-TSS (NM_001294259)	-67.0	NM_001294259	66498.0	Mm.260360	NM_025600	ENSMUSG00000074247	Dda1	1500034J01Rik|1700095J19Rik|R74921	DET1 and DDB1 associated 1	protein-coding	3.87370164119866	3.90227955135971	5.04204833182424	3.95549685400953	3.48123180873978	3.52799150836855	5.7086134373588	4.73007687271335	0.498407916989936	0.36264313361956	0.858187939866503
Merged-chr5-101828996-2	chr5	101828896	101829096	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	63866.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-184022597-2	chr1	184022497	184022697	+	783.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2B2|LTR|ERVL	11401.0	NM_028516	73363.0	Mm.50115	NM_028516	ENSMUSG00000044854	1700056E22Rik	-	RIKEN cDNA 1700056E22 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-122242871-2	chr7	122242771	122242971	+	589.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	23375.0	NM_027363	70261.0	Mm.96997	NM_027363	ENSMUSG00000030865	Chp2	2010110P09Rik|Cbhp2	calcineurin-like EF hand protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-145339384-2	chr6	145339287	145339487	+	932.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48238.0	NR_003625	381827.0	Mm.179075	NM_001001987		1700073E17Rik	-	ribosomal protein L7 pseudogene	pseudo	2.69845776221179	1.24449915871052	2.7268625223038	2.08401438800667	1.56567455377409	2.37005204929904	1.2199819120799	2.21238092115074	-0.919713429761743	0.381659489758963	0.872879327710422
Merged-chr1-46873636-2	chr1	46873536	46873736	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356417, intron 2 of 10)	intron (NM_001356417, intron 2 of 10)	-20018.0	NM_172653	227059.0	Mm.233889	NM_172653	ENSMUSG00000025986	Slc39a10	2900042E17Rik|5430433I10|Zip10|mKIAA1265	solute carrier family 39 (zinc transporter), member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-41633030-4	chr7	41632918	41633118	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360680)	promoter-TSS (NM_001360680)	-513.0	NM_001360675	67607.0	Mm.384626	NM_023363	ENSMUSG00000074165	Zfp788	2810426N06Rik|AI256342|AI605193	zinc finger protein 788	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-49745548-2	chr2	49745448	49745648	+	560.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008449, intron 21 of 25)	intron (NM_008449, intron 21 of 25)	-42138.0	NM_027990	71897.0	Mm.41381	NM_027990	ENSMUSG00000026765	Lypd6b	2310010M24Rik|AW049525	LY6/PLAUR domain containing 6B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105710795-1	chr8	105710695	105710895	+	541.0	f1_c57bl6.idr	TTS (NM_001357256)	TTS (NM_001357256)	2506.0	NM_027655	71046.0	Mm.280888	NM_027655	ENSMUSG00000013158	4933405L10Rik	-	RIKEN cDNA 4933405L10 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124859601-3	chr5	124859504	124859704	+	852.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144819, intron 1 of 3)	intron (NM_144819, intron 1 of 3)	2617.0	NM_144819	215707.0	Mm.389693	NM_144819	ENSMUSG00000037979	Ccdc92	AW050178|D5Bwg0834e	coiled-coil domain containing 92	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-4293151-4	chr7	4293109	4293309	+	900.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19020.0	NM_008848	18729.0	Mm.326531	NM_008848		Pira6	12M1|Pira10|p91B	paired-Ig-like receptor A6	protein-coding	-0.270942564981898	-0.0637390901051492	0.305493497252709	-0.26516273952445	-0.270083005846268	-0.256143304960311	0.31650623838072	-0.264554286226947	-0.316585707596221	0.896908875077389	1
Merged-chr1-174040940-4	chr1	174040837	174041037	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146717)	promoter-TSS (NM_146717)	-996.0	NM_146717	258712.0	Mm.223146	NM_146717	ENSMUSG00000045381	Olfr433	MOR123-1	olfactory receptor 433	protein-coding	6.22127528226472	6.54623457685732	6.15082746162042	6.43207470731533	5.87455307545602	6.39336360357978	6.38283021733474	6.27890704323817	-0.111557032728057	0.609484583059744	0.974992433107985
Merged-chr7-64248412-3	chr7	64248306	64248506	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039104, intron 26 of 26)	intron (NM_001039104, intron 26 of 26)	1693.0	NR_105844	102465226.0		NR_105844	ENSMUSG00000098910	Mir6416	Gm27746|mmu-mir-6416	microRNA 6416	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-7453059-2	chr19	7452959	7453159	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_053076, intron 1 of 6)	B2_Mm1t|SINE|B2	30232.0	NM_001271486	20168.0	Mm.246990	NM_053076	ENSMUSG00000024758	Rtn3	RTN3-A1	reticulon 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-72982072-2	chr5	72981972	72982172	+	579.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24832.0	NM_173403	231290.0	Mm.491387	NM_173403	ENSMUSG00000029219	Slc10a4	E130304D01	solute carrier family 10 (sodium/bile acid cotransporter family), member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-122247769-2	chr9	122247644	122247844	+	700.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271873, intron 11 of 12)	intron (NM_001271873, intron 11 of 12)	26284.0	NR_106185	102465896.0		NR_106185	ENSMUSG00000098922	Mir8106	Gm27594|mmu-mir-8106	microRNA 8106	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-123278068-2	chr1	123277968	123278168	+	797.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C|LTR|ERVK	767491.0	NM_199021	269109.0	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81524443-4	chr10	81524277	81524477	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010304)	promoter-TSS (NM_010304)	-152.0	NM_010304	14676.0	Mm.1546	NM_010304	ENSMUSG00000034792	Gna15	G[a]15|Galpha15	guanine nucleotide binding protein, alpha 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-76669583-2	chr16	76669483	76669683	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	109509.0	NR_155453	102632814.0		NR_155453	ENSMUSG00000109333	Gm30790	Gm45028	predicted gene, 30790	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-87223558-2	chr18	87223458	87223658	+	541.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A1-int|LTR|ERVL-MaLR	511247.0	NM_001361145	12405.0	Mm.70775	NM_172633	ENSMUSG00000024647	Cbln2	6330593N19Rik|A730004O05	cerebellin 2 precursor protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-62189464-4	chr18	62189367	62189567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9367.0	NM_001013754	225609.0	Mm.296917	NM_001013754	ENSMUSG00000054589	Gm9949	EG225609	predicted gene 9949	protein-coding	2.60080681579319	2.69623707870219	2.9141279240115	2.53151892880263	2.86929333188268	1.56952086604473	3.31886043390174	2.42271544447726	0.0317085746038295	0.968240742756972	0.998431161219273
Merged-chr5-88566638-2	chr5	88566538	88566738	+	880.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289774, intron 1 of 17)	intron (NM_001289774, intron 1 of 17)	1598.0	NM_001289775	52822.0	Mm.270469	NM_027530	ENSMUSG00000029291	Rufy3	2810428M05Rik|6330416M07Rik|AW455998|AW538594|D5Bwg0860e|Ripx|Rpipx	RUN and FYVE domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-59783941-4	chr4	59783857	59784057	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001013577)	promoter-TSS (NM_001013577)	-102.0	NM_001013577	66209.0	Mm.51988	NM_001013577	ENSMUSG00000038544	Inip	1110054O05Rik|2610312O17Rik|AA399876|Ssbip1	INTS3 and NABP interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-119787534-4	chr2	119787412	119787612	+	916.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163701)	promoter-TSS (NM_001163701)	25.0	NM_177294	68925.0	Mm.30496	NM_177294	ENSMUSG00000034032	Rpap1	1190005L06Rik|A730023M06Rik|AU041788|AW107702|mKIAA1403	RNA polymerase II associated protein 1	protein-coding	3.14565438483997	2.30507905597655	1.61842051253166	2.91416319424585	3.37298357550256	1.38803945476822	1.34189492480797	3.14816456159399	0.0550738654101465	0.955921184914681	0.998431161219273
Merged-chr12-54998710-3	chr12	54998615	54998815	+	884.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-12379.0	NM_013815	217578.0	Mm.479583	NM_013815	ENSMUSG00000035021	Baz1a	Acf1|B930060C03|BC065123|Gtl5|Wcrf180|cbp146	bromodomain adjacent to zinc finger domain 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-73793291-4	chr13	73793180	73793380	+	704.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360694, intron 7 of 24)	ORR1D2|LTR|ERVL-MaLR	29583.0	NM_011390	20499.0	Mm.275800	NM_011390	ENSMUSG00000017756	Slc12a7	AA408796|D13Ertd261e|Kcc4	solute carrier family 12, member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-107863396-2	chr13	107863296	107863496	+	733.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 2 of 14)	intron (NM_145456, intron 2 of 14)	26668.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-8888379-4	chr10	8888278	8888478	+	949.883301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2308.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	2.79805768522728	4.30374771862519	2.79459997774467	1.92209523669398	3.9379204069704	4.5750088691802	4.52166776721123	3.40408569671308	1.33475398395798	0.0371573717069681	0.274350236551083
Merged-chr7-137310434-1	chr7	137310334	137310534	+	555.0	f1_c57bl6.idr	intron (NM_001113415, intron 4 of 15)	CpG-13675	4011.0	NM_001113415	13593.0	Mm.258708	NM_010096	ENSMUSG00000010476	Ebf3	3110018A08Rik|O/E-2|mKIAA4201	early B cell factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85380523-4	chr12	85380393	85380593	+	945.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-5776.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-66212264-2	chr9	66212164	66212364	+	571.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010019, intron 2 of 11)	intron (NM_010019, intron 2 of 11)	54038.0	NM_010019	13143.0	Mm.304472	NM_010019	ENSMUSG00000032380	Dapk2	-	death-associated protein kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-12096507-2	chr16	12096407	12096607	+	573.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028277, intron 2 of 4)	B4A|SINE|B4	112394.0	NM_001174086	72555.0	Mm.310139	NM_028277	ENSMUSG00000022494	Shisa9	2700045P11Rik|Ckamp44	shisa family member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-34747193-4	chr14	34747097	34747297	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001301330, exon 19 of 19)	3' UTR (NM_001301330, exon 19 of 19)	-72939.0	NM_008166	14803.0	Mm.121569	NM_008166	ENSMUSG00000041078	Grid1	GluD1|GluRdelta1	glutamate receptor, ionotropic, delta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-51094881-4	chr2	51094782	51094982	+	921.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TTTTTG)n|Simple_repeat|Simple_repeat	54229.0	NM_028810	74194.0	Mm.46497	NM_028810	ENSMUSG00000017144	Rnd3	2610017M01Rik|AI661404|Arhe|Rhoe	Rho family GTPase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-92279351-4	chr5	92279257	92279457	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1176.0	NM_025972	67111.0	Mm.28890	NM_025972	ENSMUSG00000029413	Naaa	2210023K21Rik|3830414F09Rik|Asahl	N-acylethanolamine acid amidase	protein-coding	4.67966854379143	4.46495747839005	5.62893556379817	5.13468805613124	2.09968489398881	3.77635129849999	3.73230443706553	2.64575152376368	-2.41479028196391	2.73710590937025e-06	0.000152980419412846
Merged-chr15-75981949-4	chr15	75981848	75982048	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001163518, exon 1 of 1)	exon (NM_001163518, exon 1 of 1)	337.0	NM_001163518	223648.0	Mm.17610	NM_146059	ENSMUSG00000098176	Ccdc166	2410075B13Rik	coiled-coil domain containing 166	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-122822049-2	chr6	122821949	122822149	+	856.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_021899, intron 1 of 10)	intron (NM_021899, intron 1 of 10)	1865.0	NM_021899	60611.0	Mm.87142	NM_021899	ENSMUSG00000003154	Foxj2	Fhx	forkhead box J2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-55714688-4	chr13	55714568	55714768	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175150)	promoter-TSS (NM_175150)	18.0	NM_175150	69672.0	Mm.294457	NM_175150	ENSMUSG00000021497	Txndc15	2310047H23Rik|AI854086|C5orf14|UNQ335	thioredoxin domain containing 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117696741-2	chr11	117696641	117696841	+	594.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198022, intron 1 of 21)	RMER13B|LTR|ERVK	42452.0	NM_198022	217351.0	Mm.40272	NM_198022	ENSMUSG00000025571	Tnrc6c	9930033H14Rik|mKIAA1582	trinucleotide repeat containing 6C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-61950812-2	chr11	61950712	61950912	+	821.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5951.0	NM_001281818	432572.0	Mm.438022	NM_001029936	ENSMUSG00000042331	Specc1	2810012G08Rik|B230396K10Rik|Cytsb	sperm antigen with calponin homology and coiled-coil domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-26499645-2	chr2	26499545	26499745	+	649.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008714, intron 2 of 33)	intron (NM_008714, intron 2 of 33)	4177.0	NM_008714	18128.0	Mm.290610	NM_008714	ENSMUSG00000026923	Notch1	9930111A19Rik|Mis6|N1|Tan1|lin-12	notch 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-35050701-3	chr12	35050606	35050806	+	695.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001014973, intron 1 of 25)	intron (NM_001014973, intron 1 of 25)	3517.0	NM_001014973	217463.0	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	0.793012371993743	1.672374397236	0.824143515058147	1.65428737906867	1.37469122591896	0.84211517491898	1.37292102550056	1.66423025909011	0.110448847894688	0.937875043529185	0.998431161219273
Merged-chr19-53332169-4	chr19	53332071	53332271	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001008543, intron 2 of 5)	intron (NM_001008543, intron 2 of 5)	1763.0	NM_001008543	17859.0	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-127270712-4	chr2	127270628	127270828	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_139308, exon 1 of 8)	exon (NM_139308, exon 1 of 8)	499.0	NM_139308	99138.0	Mm.41271	NM_139308	ENSMUSG00000027367	Stard7	AI852671|AL022671|AW544915	START domain containing 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90841355-2	chr2	90841298	90841498	+	645.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	-5757.0	NM_001317241	56428.0	Mm.28023	NM_019758	ENSMUSG00000027282	Mtch2	2310034D24Rik|4930539J07Rik|HSPC032	mitochondrial carrier 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-109563066-3	chr5	109562977	109563177	+	894.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1VL4|LINE|L1	-4084.0	NM_001310694	57914.0	Mm.35771	NM_016715	ENSMUSG00000033467	Crlf2	CRLM2|Ly114|Tpte2|Tslpr	cytokine receptor-like factor 2	protein-coding	3.36514075015123	2.37611167489435	2.54077244458063	1.18815575531681	3.43478932111025	1.28054343150847	2.56283765661292	1.19478565549055	-0.213749633420257	0.909744580422723	0.998431161219273
Merged-chr12-72490219-4	chr12	72490115	72490315	+	887.1083369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030070, intron 23 of 24)	RLTR19|LTR|ERVK	-46142.0	NM_026327	67708.0	Mm.11233	NM_026327	ENSMUSG00000034501	Pcnx4	1810048J11Rik|4932413O10|AU017192|Pcnxl4	pecanex homolog 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-80938238-4	chr18	80938137	80938337	+	967.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20A2B_MM|LTR|ERVK	-4179.0	NM_015805	50771.0	Mm.247138	NM_015805	ENSMUSG00000024566	Atp9b	AA934181|Atpc2b|IIb|MMR	ATPase, class II, type 9B	protein-coding	3.03088784111233	1.90268107443863	2.96316451238993	2.58390347414335	2.91748985619855	2.7681135275291	2.98568627819449	2.59698047919395	0.236291042971218	0.744969102227318	0.998431161219273
Merged-chr13-63259861-2	chr13	63259761	63259961	+	606.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289926, intron 13 of 15)	intron (NM_001289926, intron 13 of 15)	19832.0	NR_110521	72061.0	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-168579266-4	chr2	168579163	168579363	+	990.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291169, intron 1 of 10)	intron (NM_001291169, intron 1 of 10)	11102.0	NM_001291178	18019.0	Mm.116802	NM_010899	ENSMUSG00000027544	Nfatc2	AI607462|NF-ATc2|NF-ATp|NFAT1|NFAT1-D|Nfatp	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2	protein-coding	3.57983727519855	3.64245333680075	2.9344403450761	2.96685603337435	3.48837209779552	3.18582593139915	3.62686744280986	3.77890915617684	0.340429323918821	0.54062612486549	0.954866069207078
Merged-chr17-27854444-2	chr17	27854344	27854544	+	614.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-2063.0	NM_001080769	224648.0	Mm.291291	NM_001080769	ENSMUSG00000039512	Uhrf1bp1	1110020K19Rik|AA408674|F830021D11Rik|mKIAA4127	UHRF1 (ICBP90) binding protein 1	protein-coding	-1.02984829257602	-1.26598729172987	-1.27598232616595	-0.988925435152524	-1.29328978397535	-1.26382132607229	-1.27371966945454	-1.28272291979146	-2.24097144207091	0.505905030189596	1
Merged-chr2-129696284-2	chr2	129696184	129696384	+	571.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_018863, intron 2 of 3)	intron (NM_018863, intron 2 of 3)	2374.0	NM_001286502	18610.0	Mm.6239	NM_018863	ENSMUSG00000027400	Pdyn	Dyn	prodynorphin	protein-coding	-1.56355737717652	-1.81244775989375	-1.82128546162293	-1.82854501295842	-1.83962066705452	-1.81053259306168	-1.81928479966835	-1.82724555674025	-1.28500227969968	0.715751224811686	1
Merged-chr2-165364433-2	chr2	165364333	165364533	+	606.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2314.0	NM_001005425	381405.0	Mm.296323	NM_001005425	ENSMUSG00000056824	Zfp663	Gm1008	zinc finger protein 663	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125302313-1	chr6	125302213	125302413	+	589.0	f0_balb.idr	Intergenic	Intergenic	11572.0	NM_010736	17000.0	Mm.3122	NM_010736	ENSMUSG00000030339	Ltbr	AI256028|LTbetaR|Ltar|TNF-R-III|TNFCR|TNFR-RP|TNFR2-RP|TNFRrp|Tnfbr|Tnfrsf3	lymphotoxin B receptor	protein-coding	-0.0568860844103869	-0.0400181662461276	0.635059576472057	0.590320864227895	0.222343925839018	-0.0387759957441282	-0.0443168619557166	-0.0490515623775016	-2.41077380207571	0.294743421400491	1
Merged-chr5-30666723-4	chr5	30666628	30666828	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302130)	promoter-TSS (NM_001302130)	-158.0	NM_007681	12615.0	Mm.290563	NM_007681	ENSMUSG00000029177	Cenpa	Cenp-A	centromere protein A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-78472598-2	chr10	78472498	78472698	+	613.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7650.0	NM_172134	216134.0	Mm.206159	NM_172134	ENSMUSG00000032788	Pdxk	2310036D04Rik|AA119688|C77999	pyridoxal (pyridoxine, vitamin B6) kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-120077981-2	chr1	120077881	120078081	+	583.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4201.0	NM_019432	170706.0	Mm.24750	NM_019432	ENSMUSG00000050777	Tmem37	AI173373|AW540203|Pr|Pr1	transmembrane protein 37	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-31021044-4	chr17	31020934	31021134	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36660.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-170714547-1	chr1	170714447	170714647	+	617.5	f0_balb.idr	intron (NM_001081304, intron 15 of 15)	L1_Mus2|LINE|L1	70015.0	NM_177068	320078.0	Mm.287131	NM_177068	ENSMUSG00000038463	Olfml2b	1110018N05Rik|4832415H08Rik|AI467542	olfactomedin-like 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56266525-4	chr17	56266435	56266635	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9742.0	NM_010192	14154.0	Mm.290813	NM_010192	ENSMUSG00000043683	Fem1a	AW611390|Fem1aa	feminization 1 homolog a (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-6019990-2	chr17	6019867	6020067	+	654.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357667, intron 14 of 24)	intron (NM_001357667, intron 14 of 24)	12387.0	NM_001290698	20975.0	Mm.236068	NM_011523	ENSMUSG00000023805	Synj2	AI481647|SJ2|mKIAA0348	synaptojanin 2	protein-coding	-0.958989451905231	-0.608319962938208	-0.953776256988341	-0.955742287576618	-0.697645041059117	-0.941464432384626	-0.77903188038249	-0.955399363396723	0.34699922038998	0.906920810081925	1
Merged-chr2-173227723-3	chr2	173227623	173227823	+	785.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_022995, exon 4 of 4)	3' UTR (NM_022995, exon 4 of 4)	-8801.0	NM_001139519	58203.0	Mm.116687	NM_021394	ENSMUSG00000027514	Zbp1	2010010H03Rik|Dai|Dlm1|mZaDLM	Z-DNA binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-22840783-1	chr15	22840683	22840883	+	552.0	f1_balb.idr	Intergenic	Lx3A|LINE|L1	-125799.0	NM_001165971	545091.0	Mm.475598	NM_001165971		Hnrnpa1l2-ps2	EG545091|Gm5803	heterogeneous nuclear ribonucleoprotein A1-like 2, pseudogene 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-33170306-4	chr12	33170196	33170396	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028139, intron 2 of 3)	L1MB7|LINE|L1	22610.0	NM_028139	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	3.98668935655192	3.80613508045288	4.29475765738734	3.99645253599645	3.42018835830455	3.49705192510349	2.4471145775382	1.63732622011337	-1.6246337518086	0.00891800879871802	0.100288022510509
Merged-chr14-54912561-3	chr14	54912393	54912593	+	589.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001360406, exon 2 of 10)	exon (NM_001360406, exon 2 of 10)	639.0	NM_001360406	59049.0	Mm.27435	NM_021551	ENSMUSG00000022199	Slc22a17	1700094C23Rik|24p3R|AU041908|AW555662|BOIT|Boct	solute carrier family 22 (organic cation transporter), member 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100160298-2	chr7	100160198	100160398	+	883.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_026010, exon 2 of 2)	exon (NM_026010, exon 2 of 2)	1021.0	NM_026010	67164.0	Mm.46777	NM_026010	ENSMUSG00000030725	Lipt2	2610209A20Rik	lipoyl(octanoyl) transferase 2 (putative)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-11579253-4	chr4	11579150	11579350	+	970.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001256142)	promoter-TSS (NM_001256142)	-412.0	NM_001256142	100503583.0	Mm.249437	NM_001256142	ENSMUSG00000094595	Fsbp	-	fibrinogen silencer binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36100936-2	chr1	36100836	36101036	+	858.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_015818, intron 1 of 1)	intron (NM_015818, intron 1 of 1)	32536.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-52168669-4	chr5	52168561	52168761	+	906.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042620, intron 5 of 11)	intron (NM_001042620, intron 5 of 11)	21885.0	NR_104311	13204.0	Mm.993	NM_007839	ENSMUSG00000029169	Dhx15	DBP1|DEAH9|Ddx15|HRH2|mDEAH9	DEAH (Asp-Glu-Ala-His) box polypeptide 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-50534070-1	chr16	50533970	50534170	+	744.333313	f0_balb.idr	intron (NR_040379, intron 1 of 5)	ORR1B2|LTR|ERVL-MaLR	5568.0	NR_040379	619312.0	Mm.427671	NR_040379		G730013B05Rik	linc-Cblb|linc1610	RIKEN cDNA G730013B05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-137533641-4	chr5	137533559	137533759	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010312)	promoter-TSS (NM_010312)	-353.0	NM_010312	14693.0	Mm.30141	NM_010312	ENSMUSG00000029713	Gnb2	Gnb-2	guanine nucleotide binding protein (G protein), beta 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-84647857-4	chr17	84647754	84647954	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172256, intron 10 of 12)	intron (NM_172256, intron 10 of 12)	21355.0	NM_172256	213575.0	Mm.246119	NM_172256	ENSMUSG00000024253	Dync2li1	4933404O11Rik|CGI-60|D2lic|LIC3|mD2LIC	dynein cytoplasmic 2 light intermediate chain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141270663-2	chr7	141270563	141270763	+	630.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028069, intron 12 of 13)	B4|SINE|B4	-4239.0	NM_001252600	54123.0	Mm.3233	NM_016850	ENSMUSG00000025498	Irf7	-	interferon regulatory factor 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-33970361-2	chr8	33970261	33970461	+	782.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB4|LINE|L1	-40498.0	NM_001042675	19663.0	Mm.323997	NM_019733	ENSMUSG00000031586	Rbpms	2010300K22Rik|2700019M19Rik|AU017537|RBP-MS|hermes	RNA binding protein gene with multiple splicing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-7991557-7	chr14	7991462	7991662	+	898.6904910000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007870, intron 1 of 7)	ID_B1|SINE|B4	2620.0	NM_007870	13421.0	Mm.272258	NM_007870	ENSMUSG00000025279	Dnase1l3	DNasegamma|Dhp2|Lsd	deoxyribonuclease 1-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-80734877-4	chr17	80734773	80734973	+	936.724976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6848.0	NM_001290345	225028.0	Mm.311948	NM_001081357	ENSMUSG00000024242	Map4k3	4833416M01Rik|4833416M07Rik|9530052P13Rik|Glk|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1	mitogen-activated protein kinase kinase kinase kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-159587293-4	chr2	159587193	159587393	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-360048.0	NR_040498	71081.0	Mm.383491	NR_040498	ENSMUSG00000085198	4933416E03Rik	-	RIKEN cDNA 4933416E03 gene	ncRNA	3.81013080072239	3.43914964515967	4.28909813308403	4.32318669012622	3.89825467369387	2.909226564213	4.90016359686796	4.0878937520641	0.1585784235199	0.762744248073764	0.998431161219273
Merged-chr10-119058305-2	chr10	119058205	119058405	+	675.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7806.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-86598732-2	chr11	86598632	86598832	+	897.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356531, intron 10 of 11)	L2b|LINE|L2	-14574.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-104740532-6	chr2	104740443	104740643	+	757.922241	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144804, intron 1 of 8)	B3|SINE|B2	2258.0	NM_144804	211896.0	Mm.288805	NM_144804	ENSMUSG00000027173	Depdc7	AV216087	DEP domain containing 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-98895923-2	chr15	98895823	98896023	+	908.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007857, intron 1 of 2)	intron (NM_007857, intron 1 of 2)	2617.0	NM_007857	13363.0	Mm.324688	NM_007857	ENSMUSG00000023000	Dhh	C78960	desert hedgehog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-30584053-4	chr18	30583947	30584147	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	311182.0	NR_151699	225326.0	Mm.194127	NM_181414	ENSMUSG00000033628	Pik3c3	5330434F23Rik|Vps34	phosphatidylinositol 3-kinase catalytic subunit type 3	protein-coding	5.29248900627088	5.61058551135878	5.33659994660969	4.70016808600734	5.12571206175688	5.36607597155332	5.21115562913485	4.58367148250203	-0.200813941977638	0.536439758837292	0.953323426463389
Merged-chr11-121787439-2	chr11	121787339	121787539	+	672.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42779.0	NM_029049	74675.0	Mm.61213	NM_029049	ENSMUSG00000039198	Ptchd3	4930451E13Rik|4933440L20Rik|RNDEu-3	patched domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-88383614-4	chr10	88383509	88383709	+	997.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004164, intron 1 of 20)	RMER10A|LTR|ERVL	4197.0	NM_001004164	432486.0	Mm.335190	NM_001004164	ENSMUSG00000035311	Gnptab	EG432486|mKIAA1208	N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-72269709-4	chr5	72269590	72269790	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_003966, intron 15 of 22)	intron (NR_003966, intron 15 of 22)	66347.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-82051746-2	chr6	82051596	82051796	+	634.5	f0_balb.idr|f1_c57bl6.idr	intron (NM_145570, intron 1 of 2)	intron (NM_145570, intron 1 of 2)	10068.0	NM_145570	232146.0	Mm.489683	NM_145570	ENSMUSG00000035104	Eva1a	BC014699|Fam176a|Tmem166	eva-1 homolog A (C. elegans)	protein-coding	0.154654512001478	0.178919011020324	0.171050099283151	0.164926682058691	0.692821267790916	1.08552657082936	0.810011595677374	0.165999819044676	4.35783476419191	0.0296627775369073	1
Merged-chr9-106450327-1	chr9	106450227	106450427	+	751.0	f1_balb.idr	intron (NM_029631, intron 2 of 3)	intron (NM_029631, intron 2 of 3)	1687.0	NM_029631	76491.0	Mm.335427	NM_029631	ENSMUSG00000042073	Abhd14b	1810013B01Rik	abhydrolase domain containing 14b	protein-coding	0.71077244640315	0.188180762804444	0.352518797788341	0.785166769606026	0.433469633114013	0.189459250515353	0.357242986132361	0.178912574888936	-1.81490602909544	0.343815800455383	1
Merged-chr9-78493436-4	chr9	78493345	78493545	+	776.145813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11721.0	NM_010106	13627.0	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-112803763-3	chr10	112803661	112803861	+	791.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33991.0	NR_152199	100042639.0	Mm.403280	NR_152199		Gm3942	-	predicted gene 3942	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124512570-2	chr6	124512470	124512670	+	667.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023143)	promoter-TSS (NM_023143)	-51.0	NM_023143	50909.0	Mm.333375	NM_023143	ENSMUSG00000055172	C1ra	AI132558|C1r|mC1rA	complement component 1, r subcomponent A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-82793828-4	chr3	82793724	82793924	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	7SK|RNA|RNA	82659.0	NM_001277170	633285.0	Mm.265114	NM_001146328	ENSMUSG00000033882	Rbm46	EG633285|Gm761	RNA binding motif protein 46	protein-coding	2.25126732158206	2.53356008890014	3.05234293485006	2.23895571970065	2.83935137324003	2.04119344053522	1.97378639709669	3.47426487320604	0.367390699471329	0.650657338669131	0.985763121813986
Merged-chr7-98991494-3	chr7	98991313	98991513	+	752.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 9 of 14)	B2_Mm2|SINE|B2	149731.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	2.33712123480274	3.16059266471264	2.96978727004824	2.69515173304376	3.24381466403039	1.90574711479399	2.68053909382304	2.80971203524719	-0.119383596038612	0.872165242590728	0.998431161219273
Merged-chr1-59634161-1	chr1	59634061	59634261	+	764.5	f0_balb.idr	exon (NM_001357842, exon 18 of 19)	exon (NM_001357842, exon 18 of 19)	36673.0	NM_009460	22218.0	Mm.362118	NM_009460	ENSMUSG00000026021	Sumo1	GMP1|PIC1|SENTRIN|SMT3|SMT3H3|SMTP3|SUMO-1|Smt3C|Ubl1	small ubiquitin-like modifier 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-25216964-4	chr12	25216885	25217085	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER63A|DNA|hAT-Blackjack	87811.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126076069-1	chr7	126075969	126076169	+	809.0	f1_c57bl6.idr	intron (NM_001358885, intron 1 of 5)	intron (NM_001358885, intron 1 of 5)	6342.0	NM_001101488	269994.0	Mm.39599	NM_001101488	ENSMUSG00000046182	Gsg1l	AI852434|C230098I05Rik|G630023A01Rik|Gm637|g1l	GSG1-like	protein-coding	-1.32440223303897	-1.29339468673833	-0.717877708899544	-1.31276353204239	-1.32392690786997	-1.29109028300231	-1.30162128075409	-1.31119997543009	-2.49510383040271	0.470258445164311	1
Merged-chr10-81550355-4	chr10	81550232	81550432	+	930.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5286.0	NM_010301	14672.0	Mm.260925	NM_010301	ENSMUSG00000034781	Gna11	Dsk7|E430025L19	guanine nucleotide binding protein, alpha 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-108041615-4	chr13	108041498	108041698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2876.0	NM_001048250	75616.0	Mm.491164	NM_001048250	ENSMUSG00000071180	Smim15	2810008M24Rik	small integral membrane protein 15	protein-coding	3.91134049213853	3.72015110092461	2.99910917592814	3.71396254925087	3.55934933889651	3.37127988462534	3.84437246509463	3.73220146010395	0.00811978928185835	0.987451461550991	0.998431161219273
Merged-chr13-8641563-3	chr13	8641461	8641661	+	893.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110345, intron 3 of 10)	intron (NR_110345, intron 3 of 10)	229483.0	NM_001039389	207615.0	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101257067-4	chr15	101256988	101257188	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9758.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118490935-4	chr11	118490806	118491006	+	848.9249880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001285436, exon 14 of 14)	3' UTR (NM_001285436, exon 14 of 14)	14074.0	NM_001359368	217364.0	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-125489625-1	chr8	125489525	125489725	+	540.0	f0_balb.idr	intron (NM_001357372, intron 3 of 21)	intron (NM_001357372, intron 3 of 21)	3208.0	NM_001081337	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	0.0380885194536015	-0.295478596398578	-0.136302009885817	-0.151185421584995	0.221131694329191	-0.294647328800678	-0.298344300963233	-0.301480724643483	-0.0797897506913527	0.97286311859972	1
Merged-chr8-126920568-4	chr8	126920499	126920699	+	938.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25322.0	NM_024214	67952.0	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-142284118-2	chr7	142284039	142284239	+	840.166626	f0_balb.idr|f1_balb.idr	Intergenic	ERVB4_1-I_MM-int|LTR|ERVK	-9776.0	NM_001199309	100043627.0	Mm.388589	NM_001199309	ENSMUSG00000056885	Gm4559	-	predicted gene 4559	protein-coding	0.998931369613793	0.628041244693624	0.805979822677793	0.785866343100117	1.29134077904796	1.15555246486574	1.33574245572509	0.612364727264167	1.62271754164946	0.281909433822653	0.784607383364121
Merged-chr17-5733975-2	chr17	5733875	5734075	+	851.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 8 of 8)	intron (NM_146073, intron 8 of 8)	-64682.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-139168576-2	chr4	139168474	139168674	+	913.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	12081.0	NR_033543	100038595.0	Mm.385206	NR_033543	ENSMUSG00000073739	Gm16287	-	predicted gene 16287	ncRNA	1.24235588378828	0.765537485542629	0.996345129467452	1.32476685337011	1.87644514306264	0.770036517451596	0.749701371441132	2.45326933089978	1.84003891073361	0.18367962021685	0.658502415347141
Merged-chr2-166184617-2	chr2	166184517	166184717	+	650.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28934.0	NM_028072	72043.0	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-137397544-3	chr6	137397422	137397622	+	741.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011216, intron 10 of 26)	intron (NM_011216, intron 10 of 26)	-13199.0	NM_001164402	19277.0	Mm.186361	NM_011216	ENSMUSG00000030223	Ptpro	D28|GLEPP1|PTPBK|PTPROt|PTPU2|PTPoc|PTPphi|Ptpn15|R-PTP-O	protein tyrosine phosphatase, receptor type, O	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-128226531-4	chr7	128226405	128226605	+	977.56665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10852.0	NM_146205	233912.0	Mm.475117	NM_146205	ENSMUSG00000042178	Armc5	AW049683|BC032200	armadillo repeat containing 5	protein-coding	-0.411623914945164	-0.752660014724457	-0.755420025425383	-0.757537836771909	-0.403767662924346	-0.75203554026953	-0.585799813029245	-0.757168594234843	0.540826804709669	0.848459284950205	1
Merged-chr2-45028306-4	chr2	45028201	45028401	+	963.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355291, intron 2 of 9)	MIRc|SINE|MIR	-5124.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81626718-2	chr10	81626618	81626818	+	911.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_181586, intron 1 of 7)	L2a|LINE|L2	604.0	NM_001163430	50721.0	Mm.25643	NM_181586	ENSMUSG00000034748	Sirt6	2810449N18Rik|AI043036|Sir2l6	sirtuin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-59294696-2	chr10	59294596	59294796	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28600.0	NM_001316371	18451.0	Mm.2212	NM_011030	ENSMUSG00000019916	P4ha1	AL022634|P4ha	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-91180324-6	chr10	91180313	91180513	+	834.3555299999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8794.0	NM_001080130	21917.0	Mm.159684	NM_011605	ENSMUSG00000019961	Tmpo	5630400D24Rik|AI195756|AI606875|AW214352|AW547477|LAP2|TP	thymopoietin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-24634537-3	chr13	24634440	24634640	+	736.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178658, intron 1 of 13)	intron (NM_178658, intron 1 of 13)	-4108.0	NM_001080381	193385.0	Mm.217319	NM_029679	ENSMUSG00000036006	Ripor2	Fam65b	RHO family interacting cell polarization regulator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-93613830-3	chr16	93613728	93613928	+	915.305542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5991.0	NM_007620	12408.0	Mm.26940	NM_007620	ENSMUSG00000051483	Cbr1	AW261796|CR|Cbr	carbonyl reductase 1	protein-coding	2.5067565449742	3.20080445929038	2.53129041320728	3.79646909247145	1.07025201145867	2.21836001962284	1.17934841710865	1.13643908299629	-3.73516216076142	0.0003170577025378	0.00765632637265404
Merged-chr17-24654157-4	chr17	24654036	24654236	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3831.0	NM_023055	65962.0	Mm.21587	NM_023055	ENSMUSG00000002504	Slc9a3r2	0610011L07Rik|1200011K07Rik|2010007A20Rik|E3karp|NHERF-2|Nherf2|Octs2|Sip-1|Sip1|Sryip1|Tka-1	solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2	protein-coding	4.15017394899415	4.67592775371384	4.7153205892855	4.25675522330393	4.60820212662169	4.84933854235308	4.40626985636107	4.52865611031141	0.178646896982025	0.632449345598268	0.982230082053879
Merged-chr19-7204602-2	chr19	7204502	7204702	+	810.916687	f1_balb.idr|f1_c57bl6.idr	intron (NM_134150, intron 1 of 6)	intron (NM_134150, intron 1 of 6)	1682.0	NM_134150	107260.0	Mm.203921	NM_134150	ENSMUSG00000024767	Otub1	AI850305	OTU domain, ubiquitin aldehyde binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131761597-4	chr1	131761486	131761686	+	944.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177243, intron 12 of 20)	intron (NM_177243, intron 12 of 20)	17564.0	NM_177243	320718.0	Mm.482704	NM_177243	ENSMUSG00000042268	Slc26a9	E030002L01Rik	solute carrier family 26, member 9	protein-coding	2.91623835887327	3.65542591755712	3.61222246758303	3.27205725561843	4.0898004545449	3.75961388295109	2.82677943613825	3.28898268916741	0.300927517537984	0.601509090370873	0.973338823574839
Merged-chr17-88125197-2	chr17	88125097	88125297	+	749.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001190356)	promoter-TSS (NM_001190356)	-315.0	NM_001190356	225058.0	Mm.312053	NM_001190356		Gm4832	EG225058	predicted gene 4832	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-104105436-3	chr2	104105342	104105542	+	847.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007652, intron 2 of 3)	intron (NM_007652, intron 2 of 3)	9641.0	NM_001111060	12509.0	Mm.247265	NM_007652	ENSMUSG00000032679	Cd59a	AA987121|Cd59|protectin	CD59a antigen	protein-coding	2.61304444680434	2.8349144782408	2.83210378442998	1.4295631240225	2.71486255252446	2.85571141888644	2.13058832964602	2.35132419234698	0.00341593344420502	0.996773978876694	0.999268611847349
Merged-chr2-102451892-7	chr2	102451824	102452024	+	880.56427	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010218)	promoter-TSS (NM_010218)	-132.0	NM_010218	14221.0	Mm.29730	NM_010218	ENSMUSG00000075012	Fjx1	-	four jointed box 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-38088924-4	chr16	38088862	38089062	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019827)	promoter-TSS (NM_019827)	-39.0	NM_001347232	56637.0	Mm.394930	NM_019827	ENSMUSG00000022812	Gsk3b	7330414F15Rik|8430431H08Rik|C86142|GSK-3|GSK-3beta|GSK3	glycogen synthase kinase 3 beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-20459922-4	chr9	20459788	20459988	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011753, intron 1 of 9)	CpG	272.0	NM_011753	22688.0	Mm.107441	NM_011753	ENSMUSG00000063108	Zfp26	5033428C05Rik|KRAB15|Zfp-26|Zfp70|Zfp81-rs1|mKIAA4196|mkr-3|mszf14|mszf52	zinc finger protein 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128750624-2	chr2	128750514	128750714	+	901.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 5 of 18)	intron (NM_008587, intron 5 of 18)	51699.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	1.16072842476035	0.675237918760118	0.66469661011673	1.23576136261993	1.0652108287597	1.21660911223133	1.49830230363085	0.657935712792258	0.811318331479116	0.595920181678847	0.971416365479727
Merged-chr13-113546588-2	chr13	113546488	113546688	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-43744.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-12263132-2	chr13	12263032	12263232	+	651.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5019.0	NM_001081128	238505.0	Mm.40335	NM_001081128	ENSMUSG00000021311	Mtr	AI894170|D830038K18Rik|MS	5-methyltetrahydrofolate-homocysteine methyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-154220130-4	chr2	154220023	154220223	+	991.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001012392, intron 15 of 15)	intron (NM_001012392, intron 15 of 15)	-3619.0	NM_144890	228802.0	Mm.167411	NM_144890	ENSMUSG00000038572	Bpifb5	Lplunc5	BPI fold containing family B, member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-64533622-4	chr1	64533528	64533728	+	929.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037726, intron 1 of 6)	CpG	824.0	NM_001037726	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-69682065-7	chr12	69681924	69682124	+	988.3253779999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001135559)	promoter-TSS (NM_001135559)	-172.0	NM_001135559	20663.0	Mm.3770	NM_001135559	ENSMUSG00000034801	Sos2	SOS-2|mSOS-2	SOS Ras/Rho guanine nucleotide exchange factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-92576899-4	chr13	92576756	92576956	+	826.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030237)	promoter-TSS (NM_030237)	-624.0	NM_030237	79401.0	Mm.23520	NM_030237	ENSMUSG00000046957	Spz1	1700027M20Rik|AI429130	spermatogenic leucine zipper 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-63901524-2	chr7	63901424	63901624	+	921.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021366, intron 1 of 1)	intron (NM_021366, intron 1 of 1)	-15333.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-136688168-4	chr3	136688071	136688271	+	854.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008913, intron 1 of 13)	intron (NM_008913, intron 1 of 13)	18105.0	NM_001293622	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-72295220-4	chr8	72295123	72295323	+	987.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB5|LINE|L1	-23839.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	0.402047415908575	0.481452738665362	1.34672041414458	0.248766159716663	0.781757095446152	0.487155057796882	0.257326111848939	0.249934750439051	-1.31180830623121	0.465173145843609	1
Merged-chr13-82343863-1	chr13	82343763	82343963	+	691.5	f1_balb.idr	Intergenic	L1_Mus3|LINE|L1	354470.0	NR_039537	100628621.0		NR_039537	ENSMUSG00000106655	Mir3961	mmu-mir-3961	microRNA 3961	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31427042-2	chr14	31426942	31427142	+	612.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_011894, intron 2 of 8)	ID_B1|SINE|B4	9058.0	NM_011894	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125231761-4	chr6	125231657	125231857	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001286753)	TTS (NM_001286753)	103.0	NM_145391	213233.0	Mm.296902	NM_145391	ENSMUSG00000038213	Tapbpl	BC017613|TAPBPL-R|Tapbplr	TAP binding protein-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-124663224-4	chr4	124663148	124663348	+	854.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5602.0	NM_011141	18991.0	Mm.297371	NM_011141	ENSMUSG00000090125	Pou3f1	Oct-6|Oct6|Otf-6|Otf6|Scip|Test1|Tst-1|Tst1	POU domain, class 3, transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83120996-2	chr6	83120896	83121096	+	696.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_023547)	TTS (NM_023547)	465.0	NM_001083923	22377.0	Mm.1109	NM_016757	ENSMUSG00000030035	Wbp1	AI255152	WW domain binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-8993665-6	chr3	8993561	8993761	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	10543.0	NM_001357073	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-120481034-2	chr6	120480934	120481134	+	787.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008359, exon 13 of 13)	exon (NM_008359, exon 13 of 13)	12773.0	NM_033567	94047.0	Mm.23088	NM_033567	ENSMUSG00000094626	Tmem121b	AW048664|Cecr6	transmembrane protein 121B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-75010563-3	chr14	75010452	75010652	+	900.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030568, intron 3 of 3)	intron (NR_030568, intron 3 of 3)	-5475.0	NM_198642	271221.0	Mm.320280	NM_198642	ENSMUSG00000034959	Rubcnl	5031414D18Rik|Gm744|Gm911|Kiaa0226l	RUN and cysteine rich domain containing beclin 1 interacting protein like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-57524893-2	chr14	57524793	57524993	+	968.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145837)	promoter-TSS (NM_145837)	64.0	NM_145837	239114.0	Mm.390726	NM_145837	ENSMUSG00000050222	Il17d	AI462269|IL-17D	interleukin 17D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-115539766-4	chr8	115539679	115539879	+	923.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	167115.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-10838974-2	chr9	10838874	10839074	+	719.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033359, intron 1 of 20)	intron (NM_001033359, intron 1 of 20)	65752.0	NM_001033359	244682.0	Mm.187021	NM_001033359	ENSMUSG00000039488	Cntn5	6720426O10Rik|A830025P08Rik|Gm507|NB-2	contactin 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-164938911-4	chr2	164938817	164939017	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9302.0	NM_013599	17395.0	Mm.4406	NM_013599	ENSMUSG00000017737	Mmp9	AW743869|B/MMP9|Clg4b|Gel B|MMP-9|pro-MMP-9	matrix metallopeptidase 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-53770313-4	chr18	53770227	53770427	+	996.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25780.0	NM_178686	225523.0	Mm.193678	NM_178686	ENSMUSG00000048799	Cep120	A230075C01|AU016693|Ccdc100	centrosomal protein 120	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91956114-4	chr2	91956016	91956216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138306, intron 1 of 30)	intron (NM_138306, intron 1 of 30)	-5768.0	NM_001166597	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-74649351-4	chr11	74649254	74649454	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081158)	promoter-TSS (NM_001081158)	-141.0	NM_001081158	74148.0	Mm.214574	NM_001081158	ENSMUSG00000020741	Cluh	1300001I01Rik|Kiaa0664|mKIAA0664	clustered mitochondria (cluA/CLU1) homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-118946132-2	chr14	118946032	118946232	+	543.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008929, intron 1 of 11)	intron (NM_008929, intron 1 of 11)	8200.0	NM_008929	100037258.0	Mm.12616	NM_008929	ENSMUSG00000022136	Dnajc3	AA408985|AU067833|Dnajc3a|Dnajc3b|Prkri|mp58|p58|p58IPK	DnaJ heat shock protein family (Hsp40) member C3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-43604692-4	chr7	43604570	43604770	+	929.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RodERV21-int|LTR|ERV1	-2499.0	NM_001355131	74400.0	Mm.159188	NM_028913	ENSMUSG00000055102	Zfp819	4930427I11Rik|4933405K07Rik	zinc finger protein 819	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-92698778-4	chr16	92698674	92698874	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111022, intron 2 of 6)	CpG	-1445.0	NM_009821	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	2.25506232361515	2.26850342199237	1.84107194826257	2.26097002959569	3.41689946203921	2.28599559122494	1.35759131006492	2.93958320365895	1.15572483200126	0.199539763138141	0.683023426499248
Merged-chr13-49421634-1	chr13	49421534	49421734	+	611.0	f0_balb.idr	promoter-TSS (NM_001276399)	promoter-TSS (NM_001276399)	20.0	NM_001276399	75678.0	Mm.390586	NM_199056	ENSMUSG00000021385	Ippk	1810043M15Rik|InsP6	inositol 1,3,4,5,6-pentakisphosphate 2-kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-86884747-3	chr8	86884644	86884844	+	951.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030563, intron 1 of 6)	CpG	514.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	1.18351746581365	1.34187014885398	1.09238970008589	1.67588312735744	0.806533466952961	2.39825938367214	1.86501816327783	0.833744025637113	1.00559489624463	0.438156004047491	0.908612234382228
Merged-chr17-45433096-1	chr17	45432996	45433196	+	1000.0	f1_balb.idr	promoter-TSS (NR_130960)	promoter-TSS (NR_130960)	611.0	NM_152810	71702.0	Mm.28270	NM_152810	ENSMUSG00000023932	Cdc5l	1200002I02Rik|AA408004|PCDC5RP	cell division cycle 5-like (S. pombe)	protein-coding	2.34727124627949	2.08524069313221	2.14462622174995	1.95591241798304	2.36741323979167	1.27507288783222	2.73213434868455	1.21949878091432	-0.116650396115148	0.911329779970775	0.998431161219273
Merged-chr8-87473374-1	chr8	87473274	87473474	+	546.0	f1_c57bl6.idr	promoter-TSS (NM_019626)	promoter-TSS (NM_019626)	258.0	NR_125722	100040294.0	Mm.213632	NR_033430	ENSMUSG00000097248	Gm2694	C230036H16Rik|linc1582	predicted gene 2694	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-88269970-2	chr1	88269870	88270070	+	764.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040291)	promoter-TSS (NR_040291)	-562.0	NR_040291	78605.0	Mm.384762	NR_040291		6430706D22Rik	-	RIKEN cDNA 6430706D22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-136519251-3	chr5	136519153	136519353	+	716.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291238, intron 1 of 22)	intron (NM_001291238, intron 1 of 22)	46728.0	NM_001291239	13047.0	Mm.320317	NM_009986	ENSMUSG00000029705	Cux1	CDP|Cutl1|Cux|Cux-1	cut-like homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80596285-4	chr10	80596170	80596370	+	764.770813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5929.0	NM_145421	216169.0	Mm.29802	NM_145421	ENSMUSG00000003346	Abhd17a	1700013O15Rik|BC005632|D10Bwg1364e|Fam108a	abhydrolase domain containing 17A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-50123983-3	chr17	50123826	50124026	+	909.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181397, intron 2 of 9)	Charlie1|DNA|hAT-Charlie	66571.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	2.71386840229827	3.14393529743253	3.57975089837199	1.71810812621951	3.04476329505017	2.28435197320198	2.87358272104824	1.94747966396165	-0.622204607428828	0.439027742789169	0.909130714404946
Merged-chr15-82344172-2	chr15	82344072	82344272	+	699.333374	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177391, exon 2 of 2)	3' UTR (NM_177391, exon 2 of 2)	-1874.0	NM_026914	69029.0	Mm.260042	NM_026914	ENSMUSG00000022452	Smdt1	1500032L24Rik|Emre	single-pass membrane protein with aspartate rich tail 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-21678708-2	chr17	21678608	21678808	+	603.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1169.0	NM_001354753	100310809.0	Mm.293030	NM_001354753		Gm10509	-	predicted gene 10509	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-79843483-3	chr3	79843407	79843607	+	855.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027495)	promoter-TSS (NM_027495)	-845.0	NM_027495	70652.0	Mm.46635	NM_027495	ENSMUSG00000027956	Tmem144	1110057I03Rik|5730537D05Rik	transmembrane protein 144	protein-coding	-1.7024385483431	-1.81249224917775	-1.82134771053534	-1.82862185015837	-1.70038292649591	-1.81057323376012	-1.81934302819017	-1.82731978264371	0.0376840119903864	0.991491645451152	1
Merged-chr15-64047804-4	chr15	64047701	64047901	+	816.979126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360037, intron 1 of 11)	MTEa|LTR|ERVL-MaLR	11963.0	NM_001360038	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-66816679-4	chr4	66816517	66816717	+	908.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-10934.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-58458066-2	chr15	58457966	58458166	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_145959)	TTS (NM_145959)	42598.0	NM_145959	210998.0	Mm.3224	NM_145959	ENSMUSG00000037119	Fam91a1	AV220772|BC033609|D15Ertd621e|SKIN|mKIAA0493	family with sequence similarity 91, member A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-143685874-4	chr7	143685773	143685973	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024290)	promoter-TSS (NM_024290)	2.0	NM_001308111	79201.0	Mm.290780	NM_024290	ENSMUSG00000037613	Tnfrsf23	SOB|TNFRSFH23|Tnfrh1|Tnfrsf1al1|mDcTRAILR1|mSOB	tumor necrosis factor receptor superfamily, member 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-37442961-2	chr6	37442861	37443061	+	927.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178661)	promoter-TSS (NM_178661)	-813.0	NM_178661	208647.0	Mm.169929	NM_178661	ENSMUSG00000038648	Creb3l2	BBF2H7|C530025K05Rik|SCIRR69	cAMP responsive element binding protein 3-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134247509-4	chr6	134247403	134247603	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 5 of 8)	intron (NM_001303102, intron 5 of 8)	-148826.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	4.92028022341999	5.06199882195366	4.79783120290898	4.50580312300129	4.07539340629723	4.1536481716646	4.4592491654354	4.15918345459751	-0.781251693858998	0.0346633792795856	0.263333405189828
Merged-chr6-119360482-4	chr6	119360363	119360563	+	995.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355692, intron 4 of 7)	intron (NM_001355692, intron 4 of 7)	28271.0	NM_001355692	68465.0	Mm.291826	NM_197985	ENSMUSG00000030168	Adipor2	1110001I14Rik|ADCR2|AI115388|AW554121|D6Ucla1e|Paqr2	adiponectin receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-31164961-2	chr6	31164861	31165061	+	633.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_110469)	TTS (NR_110469)	53513.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80319696-2	chr10	80319596	80319796	+	629.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_025521, intron 1 of 1)	ID_B1|SINE|B4	852.0	NM_025521	66374.0	Mm.383824	NM_025521	ENSMUSG00000020133	2310011J03Rik	AI452186|AW545358	RIKEN cDNA 2310011J03 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123684684-7	chr5	123684824	123685024	+	831.857117	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291229)	promoter-TSS (NM_001291229)	-563.0	NM_001359222	56430.0	Mm.241109	NM_019765	ENSMUSG00000049550	Clip1	1110007I12Rik|4631429H07Rik|AV017631|C81039|CLIP-170|CLIP170|CYLN1|Clip50|Rsn|mKIAA4046|restin	CAP-GLY domain containing linker protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4612666-2	chr19	4612566	4612766	+	723.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153388, intron 2 of 2)	intron (NM_153388, intron 2 of 2)	3001.0	NM_153388	225875.0	Mm.329675	NM_153388	ENSMUSG00000045045	Lrfn4	BC023156|Salm3	leucine rich repeat and fibronectin type III domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98815989-2	chr11	98815889	98816089	+	623.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_138660, intron 3 of 13)	B1_Mus1|SINE|Alu	-5900.0	NR_033551	100037262.0	Mm.442062	NR_033551	ENSMUSG00000075576	Gm12359	-	predicted gene 12359	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-87350508-3	chr3	87350430	87350630	+	839.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7351.0	NM_009690	11801.0	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	0.938547993900152	1.92537792010523	0.778537750870303	1.87214081842009	0.74342882390981	1.83746670144852	0.782563689796206	1.33301637222189	-0.729463587111474	0.608995282597972	0.974836618421748
Merged-chr13-59772970-2	chr13	59772870	59773070	+	711.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_015349, exon 2 of 2)	non-coding (NR_015349, exon 2 of 2)	3004.0	NR_015349	13996.0	Mm.490435	NR_015349		Etohd2	AW491659	ethanol decreased 2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-119446095-2	chr8	119445995	119446195	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_054095)	promoter-TSS (NM_054095)	-624.0	NM_054095	117148.0	Mm.356184	NM_054095	ENSMUSG00000031837	Necab2	Efcbp2	N-terminal EF-hand calcium binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126481901-2	chr7	126481801	126482001	+	972.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5454.0	NM_172745	233870.0	Mm.197829	NM_172745	ENSMUSG00000073838	Tufm	2300002G02Rik|C76308|C76389|EF-TuMT|EFTU	Tu translation elongation factor, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102708529-1	chr12	102708429	102708629	+	549.0	f1_c57bl6.idr	Intergenic	Intergenic	-3660.0	NM_172584	217837.0	Mm.482192	NM_172584	ENSMUSG00000057963	Itpk1	BC031182	inositol 1,3,4-triphosphate 5/6 kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-88823989-4	chr18	88823895	88824095	+	991.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	70212.0	NM_018821	54607.0	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132571378-3	chr4	132571263	132571463	+	584.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081211, intron 1 of 1)	intron (NM_001081211, intron 1 of 1)	7296.0	NM_001081211	19204.0	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-102739024-4	chr2	102738927	102739127	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077514, intron 3 of 10)	intron (NM_001077514, intron 3 of 10)	7733.0	NR_153852	102637542.0	Mm.371582	NR_153852		Gm13872	-	predicted gene 13872	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27758544-4	chr2	27758472	27758672	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290481, intron 9 of 9)	intron (NM_001290481, intron 9 of 9)	47989.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-59230477-4	chr11	59230362	59230562	+	902.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2195.0	NM_007476	11840.0	Mm.371546	NM_007476	ENSMUSG00000048076	Arf1	-	ADP-ribosylation factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-178253075-2	chr2	178252975	178253175	+	847.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001007154, intron 1 of 12)	intron (NM_001007154, intron 1 of 12)	59991.0	NM_001007154	74189.0	Mm.44413	NM_028806	ENSMUSG00000027525	Phactr3	1500003N10Rik|4930415A02Rik|H17739|Scapin1|Scapinin|mKIAA4224	phosphatase and actin regulator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118808590-1	chr9	118808490	118808690	+	580.0	f1_c57bl6.idr	intron (NM_001113514, intron 4 of 13)	intron (NM_001113514, intron 4 of 13)	96898.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	-2.18292257394068	-2.15545247547656	-2.03304972317742	-2.17058342868585	-2.18099422382073	-2.1536522739386	-2.16187909550322	-2.16936197735154	-0.683654500252594	0.846597994014493	1
Merged-chr11-63133753-2	chr11	63133653	63133853	+	706.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001302255, intron 2 of 4)	intron (NM_001302255, intron 2 of 4)	950.0	NM_001302260	18858.0	Mm.1237	NM_008885	ENSMUSG00000018217	Pmp22	22kDa|Gas-3|HNPP|TRE002|Tr|trembler	peripheral myelin protein 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-109796389-4	chr5	109796284	109796484	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37758.0	NR_027964	667213.0	Mm.454429	NR_027964	ENSMUSG00000105044	Gm10416	EG667213	zinc finger protein pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81103870-4	chr15	81103766	81103966	+	980.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001082536, intron 2 of 13)	intron (NM_001082536, intron 2 of 13)	1181.0	NM_153049	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	3.43695259954441	4.16689979785086	3.81688211832522	3.92136311960862	3.75355979473286	4.69076238343539	4.40824003019128	4.55238728504709	0.723332983642446	0.105632610262875	0.507087246439307
Merged-chr8-72169402-4	chr8	72169283	72169483	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023126, intron 2 of 7)	PB1D10|SINE|Alu	8183.0	NM_023126	17274.0	Mm.162811	NM_023126	ENSMUSG00000003037	Rab8a	AA409338|Mel	RAB8A, member RAS oncogene family	protein-coding	4.51341045597992	4.64028512576591	4.73050477357637	4.1543189950114	4.50844708280125	4.72289992601393	4.57873364184549	4.90111002318876	0.202602143988851	0.575402922598166	0.965286201225318
Merged-chr4-107932743-2	chr4	107932643	107932843	+	665.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9154.0	NM_009949	12896.0	Mm.307620	NM_009949	ENSMUSG00000028607	Cpt2	AI323697|CPTII	carnitine palmitoyltransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-58019775-4	chr15	58019682	58019882	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14512.0	NM_029418	75758.0	Mm.455792	NM_029418	ENSMUSG00000101892	9130401M01Rik	AI849328	RIKEN cDNA 9130401M01 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-43269130-4	chr13	43269003	43269203	+	713.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033399, intron 1 of 1)	intron (NM_001033399, intron 1 of 1)	35069.0	NM_001033399	328232.0	Mm.441399	NM_001033399	ENSMUSG00000051335	Gfod1	9630032O13|AI850995	glucose-fructose oxidoreductase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-67989782-3	chr15	67989686	67989886	+	909.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB8|LINE|L1	269070.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	2.56670054247442	1.01948625913037	2.94128490493042	0.954017365931885	0.909894749950036	2.13405921536518	2.83280849034045	0.959251822803674	-0.368760651812296	0.883053575776816	0.998431161219273
Merged-chr5-110178036-1	chr5	110177936	110178136	+	555.0	f0_balb.idr	intron (NM_001347389, intron 1 of 23)	intron (NM_001347389, intron 1 of 23)	1179.0	NM_008146	269682.0	Mm.9392	NM_008146	ENSMUSG00000029502	Golga3	5330413L04|5430416E01Rik|AI449376|AW490576|G1-499-14|Mea-2|Mea2|Mea2/Golga3|repro27	golgi autoantigen, golgin subfamily a, 3	protein-coding	0.962049396366983	0.114743583918504	0.574718640538737	0.103667467971386	0.377278307161804	0.11614903586736	0.295659271638105	0.104512189985249	-1.89425928014572	0.353850236480954	1
Merged-chr5-124021914-4	chr5	124021823	124022023	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177876, intron 1 of 3)	RSINE1|SINE|B4	10337.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-166345775-4	chr1	166345659	166345859	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33408.0	NM_030245	27878.0	Mm.100665	NM_030245	ENSMUSG00000026563	Tada1	2900026B15Rik|D1Ertd251e|Staf42|Tada1l	transcriptional adaptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-54320495-2	chr13	54320395	54320595	+	621.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TCCCG)n|Simple_repeat|Simple_repeat	-50854.0	NM_009946	12890.0	Mm.268902	NM_009946	ENSMUSG00000025867	Cplx2	921-L|AI413745|AW492120|Gm34843	complexin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-3510711-2	chr18	3510611	3510811	+	595.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026505, intron 1 of 2)	intron (NM_026505, intron 1 of 2)	2754.0	NM_026505	68010.0	Mm.284863	NM_026505	ENSMUSG00000024232	Bambi	2610003H06Rik	BMP and activin membrane-bound inhibitor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-61089683-2	chr18	61089583	61089783	+	841.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15889.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91949009-2	chr2	91948909	91949109	+	654.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166597, intron 1 of 31)	intron (NM_001166597, intron 1 of 31)	1339.0	NM_001166597	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-84674021-3	chr12	84673863	84674063	+	932.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24844.0	NM_001033334	627191.0	Mm.152484	NM_001033334	ENSMUSG00000071234	Syndig1l	DSPC1|Gm261|SynDIG2|Tmem90a	synapse differentiation inducing 1 like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-81863889-2	chr7	81863789	81863989	+	943.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291282, intron 2 of 9)	intron (NM_001291282, intron 2 of 9)	1202.0	NM_001291282	107769.0	Mm.221412	NM_145375	ENSMUSG00000038623	Tm6sf1	AI428514|BC023123|C630016D09Rik	transmembrane 6 superfamily member 1	protein-coding	-0.641487060233449	-0.630559855633698	-0.174003678654022	-0.636904926344493	-0.640805732188305	-0.629751913081728	-0.04875234552934	-0.636422463449559	0.459242966530252	0.873516462285822	1
Merged-chr11-74925869-4	chr11	74925781	74925981	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013761)	promoter-TSS (NM_013761)	9.0	NM_001002764	103677.0	Mm.288460	NM_001002764	ENSMUSG00000038290	Smg6	AI317223|AU041178	Smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-8972975-1	chr3	8972875	8973075	+	631.0	f1_c57bl6.idr	intron (NM_009412, intron 1 of 5)	L1MC2|LINE|L1	-8829.0	NM_001025261	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	0.918498540562975	0.190280916010447	0.883882739819517	0.177886590037821	0.677766147515493	0.191850052948517	0.18484158334484	0.17883365300337	-1.66760713852078	0.427221706250237	1
Merged-chr8-34108507-4	chr8	34108394	34108594	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001293758)	promoter-TSS (NM_001293758)	218.0	NM_001293759	22428.0	Mm.150373	NM_011722	ENSMUSG00000031516	Dctn6	AU044699|WS-3|p27	dynactin 6	protein-coding	2.90377924222361	3.83126948016361	4.2283678800806	3.07542484157167	3.69612316929676	4.06283527402079	1.7346555349638	4.13830013297242	0.0871112222252079	0.897274427994146	0.998431161219273
Merged-chr4-124943249-2	chr4	124943149	124943349	+	823.166626	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177573, exon 5 of 5)	3' UTR (NM_177573, exon 5 of 5)	6201.0	NM_001355603	194268.0	Mm.266907	NM_177573	ENSMUSG00000044730	9930104L06Rik	C1orf109	RIKEN cDNA 9930104L06 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-66848878-4	chr14	66848784	66848984	+	986.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009955, intron 3 of 13)	intron (NM_009955, intron 3 of 13)	19716.0	NM_009955	12934.0	Mm.352648	NM_009955	ENSMUSG00000022048	Dpysl2	AI851130|Crmp2|DRP2|Musunc33|TOAD-64|Ulip2	dihydropyrimidinase-like 2	protein-coding	2.15197290471091	2.42331409236384	3.26587690840903	2.85192784980401	2.04239304046655	2.13069664269884	1.38713489613261	2.51342805894742	-1.42465078273168	0.100339811495373	0.492853599203663
Merged-chr2-138274785-3	chr2	138274697	138274897	+	737.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025431, intron 1 of 4)	URR1B|DNA|hAT-Charlie	-3696.0	NM_145534	228662.0	Mm.153405	NM_145534	ENSMUSG00000062098	Btbd3	mKIAA0952	BTB (POZ) domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-81196828-4	chr7	81196717	81196917	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16987.0	NM_008803	18584.0	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-30806310-4	chr5	30806225	30806425	+	756.325012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8316.0	NM_133350	100732.0	Mm.332295	NM_133350	ENSMUSG00000029166	Mapre3	AI790651|EB2|EB3|EBF3|RP3	microtubule-associated protein, RP/EB family, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-31760765-2	chr2	31760665	31760865	+	607.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001283045, intron 1 of 10)	intron (NM_001283045, intron 1 of 10)	592.0	NM_001283045	11350.0	Mm.1318	NM_009594	ENSMUSG00000026842	Abl1	AI325092|Abl|E430008G22Rik|c-Abl	c-abl oncogene 1, non-receptor tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-102278991-2	chr15	102278891	102279091	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134100)	promoter-TSS (NM_134100)	-465.0	NM_134100	106073.0	Mm.287740	NM_134100	ENSMUSG00000045665	Mfsd5	AA409375|AW556797|D15Mgi27	major facilitator superfamily domain containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-132982884-2	chr7	132982784	132982984	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001362198, exon 10 of 11)	exon (NM_001362198, exon 10 of 11)	32363.0	NM_001170744	13017.0	Mm.246240	NM_009980	ENSMUSG00000030970	Ctbp2	AA407280|D7Ertd45e|Gtrgeo6|Ribeye	C-terminal binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44356563-4	chr7	44356507	44356707	+	880.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034115, intron 24 of 24)	intron (NM_001034115, intron 24 of 24)	18423.0	NM_027049	69349.0	Mm.358922	NM_027049	ENSMUSG00000008028	1700008O03Rik	-	RIKEN cDNA 1700008O03 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-10307794-4	chr3	10307688	10307888	+	922.224976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6605.0	NM_029310	75497.0	Mm.47052	NM_029310	ENSMUSG00000027530	Fabp12	1700008G05Rik	fatty acid binding protein 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-118389789-3	chr2	118389694	118389894	+	868.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177806, intron 1 of 37)	intron (NM_001177806, intron 1 of 37)	682.0	NM_001177806	27103.0	Mm.217616	NM_013719	ENSMUSG00000005102	Eif2ak4	2610011M03|GCN2|MGCN2	eukaryotic translation initiation factor 2 alpha kinase 4	protein-coding	3.82103644767534	4.03424519263181	2.90167459213598	3.80407142441512	3.00486705192249	3.72973612954271	2.25891320882734	3.16290739000243	-0.882744621352444	0.146331382048474	0.596360027791302
Merged-chr11-116603524-2	chr11	116603424	116603624	+	888.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001167680, intron 9 of 18)	intron (NM_001167680, intron 9 of 18)	9837.0	NM_009591	11298.0	Mm.42233	NM_009591	ENSMUSG00000020804	Aanat	AA-NAT|Nat-2|Nat4|Snat	arylalkylamine N-acetyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-20232282-4	chr13	20232158	20232358	+	967.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 4 of 21)	intron (NM_080288, intron 4 of 21)	141751.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-74646569-2	chr13	74646469	74646669	+	636.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_030711, exon 2 of 19)	exon (NM_030711, exon 2 of 19)	6716.0	NM_030711	80898.0	Mm.83526	NM_030711	ENSMUSG00000021583	Erap1	A-LAP|ARTS-1|Arts1|ERAAP|PILSA|PILSAP	endoplasmic reticulum aminopeptidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-143008741-3	chr7	143008650	143008850	+	913.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020286, intron 2 of 7)	intron (NM_020286, intron 2 of 7)	3091.0	NM_001128081	27027.0	Mm.28172	NM_020286	ENSMUSG00000000244	Tspan32	AW208513|Art-1|BB235973|D7Wsu37e|Phemx|Tssc6	tetraspanin 32	protein-coding	1.08975732868189	0.430827804607862	0.422234392141619	1.0862910562106	0.700280622730093	0.432756195419864	1.14669264864772	0.416728374804742	-0.451548525575943	0.801923109786885	1
Merged-chr4-33289597-4	chr4	33289485	33289685	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20726.0	NM_011884	24018.0	Mm.240024	NM_011884	ENSMUSG00000028274	Rngtt	AU020997|HCE|MCE1	RNA guanylyltransferase and 5'-phosphatase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-63120766-2	chr4	63120666	63120866	+	792.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028326, intron 12 of 14)	intron (NM_028326, intron 12 of 14)	33406.0	NM_007443	11699.0	Mm.2197	NM_007443	ENSMUSG00000028356	Ambp	AI194774|ASPI|HI-30|Intin4|Itil|UTI	alpha 1 microglobulin/bikunin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-34595624-2	chr19	34595524	34595724	+	624.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001101605, intron 1 of 1)	MTD|LTR|ERVL-MaLR	3803.0	NM_001110517	667373.0	Mm.371956	NM_001101605	ENSMUSG00000079339	Ifit1bl1	Gm14446|Ifit1c	interferon induced protein with tetratricpeptide repeats 1B like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-79213825-2	chr15	79213693	79213893	+	660.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_029470, intron 4 of 4)	MIRc|SINE|MIR	-15380.0	NM_008837	18693.0	Mm.259464	NM_008837	ENSMUSG00000068206	Pick1	Prkcabp	protein interacting with C kinase 1	protein-coding	0.52608889229224	0.782037343350945	1.58315264845363	0.540721427064177	0.846497553416807	0.5629685374666	1.20750170443485	1.15785595434788	0.0551662680601657	0.972594928339305	0.998431161219273
Merged-chr4-133852791-1	chr4	133852691	133852891	+	765.0	f1_balb.idr	intron (NM_009097, intron 17 of 21)	intron (NM_009097, intron 17 of 21)	21940.0	NM_001285506	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-36149544-2	chr8	36149431	36149631	+	796.583374	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-6479.0	NR_151736	330738.0	Mm.128075	NR_151736	ENSMUSG00000109704	Gm38414	A230084N10|Gm45568	predicted gene, 38414	ncRNA	1.9142334677871	1.43688775917127	2.74509201889719	2.44927133687827	2.87084097963716	1.73991527040947	3.0369661424928	3.4415027620093	1.32818891422046	0.126634019832309	0.55689342891744
Merged-chr6-34907351-4	chr6	34907268	34907468	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013366, intron 3 of 14)	intron (NM_001013366, intron 3 of 14)	3463.0	NM_001013366	101240.0	Mm.152120	NM_001013366	ENSMUSG00000058486	Wdr91	9530020G05Rik|AI987683|AU018665	WD repeat domain 91	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140508193-2	chr5	140508093	140508293	+	791.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_021528, intron 1 of 1)	RLTR17B_Mm|LTR|ERVK	2584.0	NM_021528	59031.0	Mm.28934	NM_021528	ENSMUSG00000036599	Chst12	AI595374|C4S-2|C4ST2	carbohydrate sulfotransferase 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-43872820-4	chr5	43872719	43872919	+	964.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007646, intron 1 of 7)	MLT1H-int|LTR|ERVL-MaLR	4010.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	4.20380207371205	4.40670126276373	4.38089537862998	4.31694893796988	5.33017994872755	4.37397215897752	5.28753194319211	4.22629752675834	0.722179077666089	0.0706112558372687	0.399745445518504
Merged-chr16-44726057-4	chr16	44725932	44726132	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145972, intron 1 of 8)	intron (NM_145972, intron 1 of 8)	1731.0	NM_145972	212547.0	Mm.310573	NM_145972	ENSMUSG00000036208	Nepro	-	nucleolus and neural progenitor protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99017719-2	chr15	99017619	99017819	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12172.0	NM_009448	22146.0	Mm.88212	NM_009448	ENSMUSG00000043091	Tuba1c	M[a]6|Tuba6	tubulin, alpha 1C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-182282314-4	chr1	182282222	182282422	+	977.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360783)	promoter-TSS (NM_001360783)	-127.0	NM_001360783	13244.0	Mm.29648	NM_007853	ENSMUSG00000038633	Degs1	AA536663|Degs|Des1|Mdes	delta(4)-desaturase, sphingolipid 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115513684-6	chr11	115513533	115513733	+	873.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008258, intron 1 of 4)	intron (NM_008258, intron 1 of 4)	760.0	NM_008258	15374.0	Mm.1775	NM_008258	ENSMUSG00000020737	Jpt1	Hn1	Jupiter microtubule associated homolog 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-24434207-4	chr16	24434107	24434307	+	952.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 1 of 12)	intron (NM_178665, intron 1 of 12)	-13884.0	NM_001145952	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36725623-4	chr18	36725509	36725709	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009841, exon 2 of 2)	exon (NM_009841, exon 2 of 2)	1206.0	NM_009841	12475.0	Mm.3460	NM_009841	ENSMUSG00000051439	Cd14	-	CD14 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-184732724-4	chr1	184732610	184732810	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008250)	promoter-TSS (NM_008250)	-217.0	NM_008250	15284.0	Mm.1347	NM_008250	ENSMUSG00000039377	Hlx	Hlx1	H2.0-like homeobox	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-109458726-2	chr8	109458626	109458826	+	595.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35301.0	NM_019938	56523.0	Mm.42166	NM_019938	ENSMUSG00000031727	Pmfbp1	1700016D22Rik|F77|Stap	polyamine modulated factor 1 binding protein 1	protein-coding	-1.84303373260285	-1.81303463126392	-1.82210660711932	-1.82955859819738	-1.84092785115721	-1.81106869625141	-1.8200529106377	-1.54273750312762	1.50114612804783	0.670102668014672	1
Merged-chr19-6402179-4	chr19	6402099	6402299	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011242, intron 2 of 16)	intron (NM_011242, intron 2 of 16)	1616.0	NM_011242	19395.0	Mm.77017	NM_011242	ENSMUSG00000032946	Rasgrp2	CDC25L|Caldaggef1	RAS, guanyl releasing protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-83660929-1	chr8	83660829	83661029	+	897.0	f1_c57bl6.idr	intron (NM_018771, intron 1 of 6)	intron (NM_018771, intron 1 of 6)	-5715.0	NM_013641	19216.0	Mm.213000	NM_013641	ENSMUSG00000019464	Ptger1	EP1|Ptgerep1	prostaglandin E receptor 1 (subtype EP1)	protein-coding	-0.564017069875386	-0.799476738697924	-0.501643744302374	-0.80402287756198	-0.6736014225663	-0.797539697302879	-0.80148425269358	-0.651073477755848	-0.924899484643567	0.729931144434105	1
Merged-chr2-128748554-3	chr2	128748414	128748614	+	926.492065	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 4 of 18)	Charlie1|DNA|hAT-Charlie	49599.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-78105331-2	chr9	78105231	78105431	+	999.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081490, intron 1 of 12)	intron (NM_001081490, intron 1 of 12)	3325.0	NM_023605	71538.0	Mm.28584	NM_023605	ENSMUSG00000001366	Fbxo9	9030401P18Rik|AA986398	f-box protein 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-65189816-3	chr1	65189690	65189890	+	686.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310624, intron 1 of 41)	intron (NM_001310624, intron 1 of 41)	3105.0	NM_011086	18711.0	Mm.38370	NM_011086	ENSMUSG00000025949	Pikfyve	5230400C17Rik|Pip5k|Pip5k3|Pipk5k3|PipkIII|p235	phosphoinositide kinase, FYVE type zinc finger containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-117496591-4	chr6	117496498	117496698	+	766.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152214, intron 2 of 2)	intron (NR_152214, intron 2 of 2)	1363.0	NR_152214	100126203.0	Mm.217172	NR_152214		6820426E19Rik	Gm43983	RIKEN cDNA 6820426E19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-69497729-2	chr12	69497629	69497829	+	591.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22179.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-124637096-2	chr2	124636996	124637196	+	668.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291000, intron 1 of 18)	intron (NM_001291000, intron 1 of 18)	-16485.0	NM_199240	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-89982211-2	chr7	89982090	89982290	+	751.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1214.0	NM_021876	13626.0	Mm.380914	NM_021876	ENSMUSG00000030619	Eed	l(7)5Rn|l7Rn5|lusk	embryonic ectoderm development	protein-coding	-0.101933037352796	0.10681144044063	-0.22443754281469	0.164471282067654	-0.231537189205511	-0.219719141306008	-0.223590958708259	0.169931077257437	-1.03057319539269	0.654673967389845	1
Merged-chr11-118144706-2	chr11	118144606	118144806	+	772.299988	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15487.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115507383-3	chr5	115507244	115507444	+	944.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011223, intron 1 of 10)	intron (NM_011223, intron 1 of 10)	668.0	NM_133915	19303.0	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	2.12141310190323	2.90858616790083	1.95577360148858	1.89914941572366	2.69595494211163	3.36177399713506	2.16391294816049	3.50589882567864	1.45887443232837	0.0655053689931787	0.383349181729712
Merged-chr9-85410892-2	chr9	85410814	85411014	+	594.5	f0_balb.idr|f1_c57bl6.idr	Intergenic	(CAG)n|Simple_repeat|Simple_repeat	-83764.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	-0.133104652211811	1.28108360715257	-0.113240641126048	0.567566090762619	-0.131218568996765	-0.101824980474831	-0.111162624034235	-0.119299668848421	-4.39151094645176	0.0447210795782639	1
Merged-chr5-32741489-1	chr5	32741389	32741589	+	845.0	f1_balb.idr	intron (NM_001347332, intron 3 of 8)	intron (NM_001347332, intron 3 of 8)	4853.0	NM_001347332	320951.0	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67098636-4	chr10	67098536	67098736	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1648.0	NM_178606	28193.0	Mm.41272	NM_178606	ENSMUSG00000019873	Reep3	D10Ucla1	receptor accessory protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-95574564-4	chr9	95574476	95574676	+	989.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14759.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-13739050-4	chr17	13738906	13739106	+	764.737488	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022311, intron 1 of 2)	intron (NM_022311, intron 1 of 2)	-21535.0	NR_151731	17356.0	Mm.59167	NM_010806	ENSMUSG00000068036	Afdn	5033403D15Rik|AF6|Af-6|Afadin|Gm314|I-afadin|Mllt4|S-afadin	afadin, adherens junction formation factor	protein-coding	1.86558916277192	2.81064441429559	2.02297455595612	1.46705161512721	1.59377917757059	1.95392361657857	2.03895054510747	2.49694293919749	-0.199474772879372	0.835580190088967	0.998431161219273
Merged-chr10-96266389-4	chr10	96266300	96266500	+	943.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40193.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-58009837-4	chr11	58009757	58009957	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028451, intron 1 of 18)	CpG	793.0	NM_028451	73158.0	Mm.248843	NM_028451	ENSMUSG00000037331	Larp1	1810024J12Rik|3110040D16Rik|Larp|mKIAA0731	La ribonucleoprotein domain family, member 1	protein-coding	2.36338520051244	2.65807415366729	1.32010315244704	1.7342086943479	2.61802574603196	1.63248367778556	2.48865686658611	2.59434259765673	0.598311316417468	0.531600073682666	0.951191400754218
Merged-chr12-85943863-2	chr12	85943763	85943963	+	633.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347395, intron 28 of 32)	intron (NM_001347395, intron 28 of 32)	118913.0	NM_001081423	320244.0	Mm.132172	NM_177114	ENSMUSG00000012609	Ttll5	1700048H13Rik|2310009M18Rik|4930556H18Rik|AI428864|D630041K24Rik|R75373|Stamp|mKIAA0998	tubulin tyrosine ligase-like family, member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-114963418-2	chr13	114963318	114963518	+	691.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033228, intron 28 of 28)	intron (NM_001033228, intron 28 of 28)	-31318.0	NM_008396	16398.0	Mm.5007	NM_008396	ENSMUSG00000015533	Itga2	CD49B|DX5|GPIa	integrin alpha 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116033747-2	chr11	116033647	116033847	+	588.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286006, intron 1 of 15)	intron (NM_001286006, intron 1 of 15)	3431.0	NM_172569	217331.0	Mm.297706	NM_172569	ENSMUSG00000020770	Unk	B230379M23Rik|Unkh|Zc3h5|Zc3hdc5|mKIAA1753	unkempt family zinc finger	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124116197-4	chr5	124116121	124116321	+	990.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_025671)	TTS (NM_025671)	113.0	NM_144509	65105.0	Mm.29430	NM_144509	ENSMUSG00000029404	Arl6ip4	AA408210|AA408365|Aip-4|Srp25	ADP-ribosylation factor-like 6 interacting protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-30713933-4	chr14	30713837	30714037	+	994.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019460)	promoter-TSS (NM_019460)	-912.0	NM_019460	54650.0	Mm.294662	NM_019460	ENSMUSG00000006527	Sfmbt1	4930442N21Rik|9330180L21Rik|AA536974|Sfmbt|Smr	Scm-like with four mbt domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-114731154-4	chr9	114731080	114731280	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026036)	promoter-TSS (NM_026036)	-23.0	NM_026036	67213.0	Mm.28858	NM_026036	ENSMUSG00000032434	Cmtm6	2810051A14Rik|AA536733|Cklfsf6	CKLF-like MARVEL transmembrane domain containing 6	protein-coding	4.43492051497757	4.3505131306239	5.45429476286184	3.63383200999127	4.4693508038811	4.62188275953204	5.27040405860245	4.63483667459662	0.190841146254051	0.662588850367882	0.991056031673253
Merged-chr11-22857287-4	chr11	22857168	22857368	+	989.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001169114, intron 1 of 1)	intron (NM_001169114, intron 1 of 1)	2467.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-34830620-2	chr1	34830520	34830720	+	823.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001160236, intron 2 of 6)	intron (NM_001160236, intron 2 of 6)	12430.0	NM_174997	214469.0	Mm.120151	NM_174997	ENSMUSG00000037503	Fam168b	Mani|mKIAA4042	family with sequence similarity 168, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-108308248-2	chr3	108308148	108308348	+	583.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019972, intron 1 of 19)	Lx9|LINE|L1	24184.0	NM_019972	20661.0	Mm.157119	NM_019972	ENSMUSG00000068747	Sort1	2900053A11Rik|AI852375|Ntr3|Ntsr3	sortilin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-34158972-4	chr10	34158884	34159084	+	819.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172508, intron 4 of 5)	ORR1E|LTR|ERVL-MaLR	-31012.0	NM_175449	215900.0	Mm.34479	NM_175449	ENSMUSG00000046031	Fam26f	A630077B13Rik|Calhm6	family with sequence similarity 26, member F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27476103-3	chr2	27476004	27476204	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113574)	promoter-TSS (NM_001113574)	-431.0	NM_001113574	67382.0	Mm.28721	NM_023336	ENSMUSG00000026918	Brd3	2410084F24Rik|AW060456|Fsrg2|ORFX|RINGL3	bromodomain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-136084495-4	chr5	136084398	136084598	+	928.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039103, intron 1 of 19)	intron (NM_001039103, intron 1 of 19)	582.0	NM_001039103	54153.0	Mm.290655	NM_133914	ENSMUSG00000004952	Rasa4	AA793972|AW112107|BB079060|CAPRI|GAPL	RAS p21 protein activator 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-165621916-4	chr1	165621826	165622026	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083897, intron 1 of 5)	intron (NM_001083897, intron 1 of 5)	12615.0	NM_001001880	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-38124274-2	chr7	38124173	38124373	+	698.666626	f0_balb.idr|f1_balb.idr	Intergenic	A-rich|Low_complexity|Low_complexity	-16783.0	NM_007633	12447.0	Mm.16110	NM_007633	ENSMUSG00000002068	Ccne1	AW538188|CycE1	cyclin E1	protein-coding	2.16780670357485	2.92454804735583	2.20570430566701	1.39098859211322	3.66665627413808	4.46795950063099	2.84076233141289	2.85763044953904	2.31629363483081	0.00245437958591727	0.0391938504061696
Merged-chr9-40776636-3	chr9	40776545	40776745	+	859.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133733, intron 5 of 6)	RSINE1|SINE|B4	-24628.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	0.444485307313233	0.468796678913391	0.460859114567452	0.891039223849973	1.1146929121777	0.838680655778096	0.647594772348513	1.10675397509671	2.20441010116245	0.199608941830279	1
Merged-chr4-8842440-4	chr4	8842303	8842503	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355382, intron 18 of 36)	L1M5|LINE|L1	91079.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-28512834-2	chr13	28512734	28512934	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045053, intron 7 of 8)	intron (NR_045053, intron 7 of 8)	198039.0	NR_105787	102466635.0		NR_105787	ENSMUSG00000099158	Mir6368	Gm27800|mmu-mir-6368	microRNA 6368	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-108306423-4	chr6	108306314	108306514	+	997.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 4 of 61)	intron (NM_010585, intron 4 of 61)	93318.0	NM_010585	16438.0	Mm.227912	NM_010585	ENSMUSG00000030102	Itpr1	D6Pas2|Gm10429|IP3R 1|IP3R1|InsP3R|Ip3r|Itpr-1|P400|Pcp-1|Pcp1|insP3R1|opt|wblo	inositol 1,4,5-trisphosphate receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125274974-4	chr6	125274871	125275071	+	915.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	9446.0	NR_015527	73870.0	Mm.440681	NR_015527	ENSMUSG00000108129	4930417O13Rik	-	RIKEN cDNA 4930417O13 gene	ncRNA	0.388516003213749	0.0594751067168012	0.0487561542384776	1.60994082191034	0.229938320277709	0.0618557701460232	0.0511429344118718	0.267477667646492	-3.01598147519667	0.11973699439547	1
Merged-chr10-79767609-4	chr10	79767486	79767686	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027505)	promoter-TSS (NR_027505)	-634.0	NR_027505	70294.0	Mm.466670	NM_144528	ENSMUSG00000035890	Rnf126	2610010O19Rik	ring finger protein 126	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-9419385-4	chr13	9419286	9419486	+	995.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081426, intron 1 of 36)	intron (NM_001081426, intron 1 of 36)	142861.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-118896553-2	chr10	118896453	118896653	+	584.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27650.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-64070940-4	chr14	64070848	64071048	+	741.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14462.0	NM_001081063	71037.0	Mm.19977	NM_001081063	ENSMUSG00000034623	Prss55	4933401F05Rik	protease, serine 55	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-87907484-3	chr1	87907382	87907582	+	879.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177646, intron 3 of 29)	L1MD1|LINE|L1	-53183.0	NR_136921	100503175.0	Mm.426422	NR_136921	ENSMUSG00000101942	Gm19582	-	predicted gene, 19582	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-90214190-3	chr16	90214091	90214291	+	606.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6551.0	NM_011434	20655.0	Mm.276325	NM_011434	ENSMUSG00000022982	Sod1	B430204E11Rik|Cu/Zn-SOD|CuZnSOD|Ipo-1|Ipo1|SODC|Sod-1	superoxide dismutase 1, soluble	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-25593662-4	chr8	25593566	25593766	+	982.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173012, intron 3 of 10)	intron (NM_173012, intron 3 of 10)	3821.0	NM_173012	270035.0	Mm.268349	NM_173012	ENSMUSG00000037363	Letm2	6030453H13|D030041N04Rik	leucine zipper-EF-hand containing transmembrane protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120570696-2	chr11	120570593	120570793	+	734.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_011032, intron 2 of 10)	B1_Mus1|SINE|Alu	2560.0	NM_011032	18453.0	Mm.16660	NM_011032	ENSMUSG00000025130	P4hb	ERp59|PDI|Pdia1|Thbp	prolyl 4-hydroxylase, beta polypeptide	protein-coding	-0.208291651046736	0.15168999619938	-0.341599736578166	0.279201033303497	-0.349427376638596	-0.336437892045383	-0.340671256758438	-0.344278822728231	-3.61164961480927	0.13705128939862	1
Merged-chr6-86600176-4	chr6	86600112	86600312	+	891.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27962.0	NM_026414	67855.0	Mm.183043	NM_026414	ENSMUSG00000033508	Asprv1	2300003P22Rik|AA986851|SASP|SASPase|Taps	aspartic peptidase, retroviral-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-119399038-1	chr9	119398938	119399138	+	694.0	f1_c57bl6.idr	Intergenic	Tigger7|DNA|TcMar-Tigger	-3140.0	NM_007397	11481.0	Mm.8940	NM_007397	ENSMUSG00000061393	Acvr2b	4930516B21Rik|ActRIIB	activin receptor IIB	protein-coding	0.541554822000009	1.74138206854817	1.25602201722415	0.559131028182475	1.24494267219119	1.1864331857142	0.572400087060233	0.560950755909524	-0.802172581861635	0.627128932325288	0.980912176761026
Merged-chr13-94976384-4	chr13	94976309	94976509	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172590)	promoter-TSS (NM_172590)	65.0	NM_172590	218460.0	Mm.33856	NM_172590	ENSMUSG00000042015	Wdr41	B830029I03Rik|MSTP048	WD repeat domain 41	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-86542203-2	chr11	86542103	86542303	+	560.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114334, intron 1 of 14)	intron (NM_001114334, intron 1 of 14)	2604.0	NM_028259	72508.0	Mm.394280	NM_028259	ENSMUSG00000020516	Rps6kb1	2610318I15Rik|4732464A07Rik|70kDa|AA959758|AI256796|AI314060|P70S6K1|S6K|S6K1|p70/85s6k|p70s6k	ribosomal protein S6 kinase, polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81166170-2	chr10	81166070	81166270	+	878.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021501, intron 1 of 10)	intron (NM_021501, intron 1 of 10)	1550.0	NM_021501	59004.0	Mm.34428	NM_021501	ENSMUSG00000004934	Pias4	PIASY|Pias-gamma|Piasg	protein inhibitor of activated STAT 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80628844-4	chr7	80628737	80628937	+	990.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173863, intron 3 of 14)	intron (NM_173863, intron 3 of 14)	-7180.0	NR_040343	100504375.0	Mm.322881	NR_040343	ENSMUSG00000084821	Gm15880	-	predicted gene 15880	ncRNA	0.0164150308960095	0.361786649010509	0.451114211655767	0.419301007676773	0.373529919639697	0.031788955093295	0.0270497107767387	0.0230246473888283	-1.68380380567175	0.432031258830663	1
Merged-chr10-59236652-4	chr10	59236525	59236725	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14703.0	NM_172939	268301.0	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-167266620-4	chr1	167266513	167266713	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030724, intron 1 of 6)	MER21B|LTR|ERVL	18514.0	NM_030724	80914.0	Mm.280895	NM_030724	ENSMUSG00000026558	Uck2	AA407809|AI481316|AU018180|AU020720|TSA903|UK|UMK|Umpk	uridine-cytidine kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-94876383-4	chr8	94876285	94876485	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053246)	promoter-TSS (NM_053246)	-73.0	NM_053246	114255.0	Mm.203949	NM_053246	ENSMUSG00000040631	Dok4	-	docking protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-22446091-4	chr16	22446015	22446215	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-6545.0	NM_023794	104156.0	Mm.155708	NM_023794	ENSMUSG00000013089	Etv5	1110005E01Rik|8430401F14Rik|ERM	ets variant 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-99261206-2	chr6	99261106	99261306	+	994.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_053202, intron 2 of 18)	intron (NM_053202, intron 2 of 18)	5309.0	NM_001197321	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-151068926-4	chr4	151068798	151068998	+	871.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081557, intron 23 of 23)	intron (NM_001081557, intron 23 of 23)	-10945.0	NM_009498	22319.0	Mm.273930	NM_009498	ENSMUSG00000028955	Vamp3	D130027G05Rik|VAMP-3|ceb	vesicle-associated membrane protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-97235442-2	chr15	97235342	97235542	+	617.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11665.0	NM_172293	239647.0	Mm.130036	NM_172293	ENSMUSG00000044250	Pced1b	Fam113b	PC-esterase domain containing 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-65577432-2	chr16	65577334	65577534	+	809.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14737.0	NM_026879	68942.0	Mm.432944	NM_026879	ENSMUSG00000004843	Chmp2b	1190006E07Rik	charged multivesicular body protein 2B	protein-coding	0.440170211592474	0.474710534346578	1.34234854618704	1.37743967737928	0.620267707853564	0.477191957210257	1.25393057741092	0.456416476614396	-1.06484836916242	0.54178937689364	0.954866069207078
Merged-chr17-28769664-3	chr17	28769558	28769758	+	666.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011950, intron 1 of 11)	intron (NM_011950, intron 1 of 11)	341.0	NM_011950	26415.0	Mm.27970	NM_011950	ENSMUSG00000004864	Mapk13	SAPK4|Serk4	mitogen-activated protein kinase 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-111269860-4	chr5	111269757	111269957	+	750.229187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001267622, intron 13 of 22)	intron (NM_001267622, intron 13 of 22)	-60840.0	NM_001301644	56305.0	Mm.200516	NM_019640	ENSMUSG00000050017	Pitpnb	PI-TP-beta	phosphatidylinositol transfer protein, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3084428-2	chr4	3084328	3084528	+	798.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-87655.0	NM_001167534	100312470.0	Mm.480297	NM_001167534	ENSMUSG00000115072	Vmn1r2	Gm11776	vomeronasal 1 receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55899007-2	chr19	55898907	55899107	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001142924, intron 1 of 11)	intron (NM_001142924, intron 1 of 11)	3686.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94967384-4	chr10	94967296	94967496	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22818.0	NM_018797	54712.0	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-49325138-2	chr13	49325038	49325238	+	724.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15930.0	NM_015759	30938.0	Mm.291089	NM_015759	ENSMUSG00000037946	Fgd3	5830461L01Rik|ZFYVE5	FYVE, RhoGEF and PH domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116131879-2	chr11	116131779	116131979	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178802)	promoter-TSS (NM_178802)	-751.0	NM_178802	338364.0	Mm.439976	NM_178802	ENSMUSG00000054517	Trim65	4732463G12Rik	tripartite motif-containing 65	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65693191-3	chr9	65693110	65693310	+	838.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172536, exon 10 of 10)	3' UTR (NM_172536, exon 10 of 10)	16662.0	NM_001301307	18247.0	Mm.116749	NM_010952	ENSMUSG00000040652	Oaz2	AZ-2|AZ2|Oaz2-ps|Sez15	ornithine decarboxylase antizyme 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-58986013-1	chr15	58985913	58986113	+	801.5	f0_balb.idr	intron (NM_144800, intron 3 of 14)	intron (NM_144800, intron 3 of 14)	52203.0	NM_023172	66218.0	Mm.322294	NM_023172	ENSMUSG00000022354	Ndufb9	1190008J14Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-143988944-1	chr2	143988844	143989044	+	557.0	f0_c57.idr	exon (NM_024281, exon 2 of 24)	exon (NM_024281, exon 2 of 24)	22319.0	NM_133626	81910.0	Mm.13705	NM_024281	ENSMUSG00000027422	Rrbp1	1700087N07Rik|5730465C04Rik|ES/130|mKIAA1398|mRRp0|mRRp1.8|mRRp10|mRRp15a|mRRp15b|mRRp16.8|mRRp2|mRRp41|mRRp47|mRRp5.4|p180	ribosome binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128495576-4	chr10	128495484	128495684	+	871.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172259, intron 4 of 6)	intron (NM_172259, intron 4 of 6)	-1698.0	NM_010860	17904.0	Mm.337074	NM_010860	ENSMUSG00000090841	Myl6	ESMLC|LC17|LC17-GI|MLC-3|MLC1SM|Myln	myosin, light polypeptide 6, alkali, smooth muscle and non-muscle	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81486425-2	chr10	81486325	81486525	+	603.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_134009)	TTS (NM_134009)	-3716.0	NM_001311124	319586.0	Mm.152689	NM_176954	ENSMUSG00000034818	Celf5	4930565A21Rik|Brunol5	CUGBP, Elav-like family member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-15470300-4	chr3	15470196	15470396	+	708.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43869.0	NM_001002898	320832.0	Mm.330924	NM_178792	ENSMUSG00000095788	Sirpb1a	9930027N05Rik|SIRP-beta|Sirpb|Sirpb1	signal-regulatory protein beta 1A	protein-coding	2.94157941175901	2.93303013763587	1.57117491247447	1.92900191839291	2.96643906850549	2.9554491266563	1.58369762025512	1.26534815207577	-0.116885952429268	0.906072414674404	0.998431161219273
Merged-chr11-69930237-2	chr11	69930137	69930337	+	831.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-5662.0	NM_016875	53422.0	Mm.29286	NM_016875	ENSMUSG00000018554	Ybx2	Msy2	Y box protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-91312523-4	chr8	91312459	91312659	+	885.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011936)	promoter-TSS (NM_011936)	663.0	NM_173431	244585.0	Mm.324592	NM_173431	ENSMUSG00000033282	Rpgrip1l	1700047E16Rik|4931437C01|Ftm|Nphp8	Rpgrip1-like	protein-coding	4.10470890777388	4.12437353555269	2.60519060603036	3.64337588759508	3.10191099193321	4.09465200118462	1.70759398934343	3.66190843745704	-0.512522574676665	0.45617813288721	0.919264728457769
Merged-chr1-180817653-2	chr1	180817553	180817753	+	810.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-4048.0	NM_008210	15078.0	Mm.138832	NM_008210	ENSMUSG00000060743	H3f3a	EyeLinc14|H3.3A	H3 histone, family 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-126625687-4	chr3	126625596	126625796	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025438, intron 2 of 18)	intron (NM_001025438, intron 2 of 18)	28745.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	3.06617389304433	3.53237706383256	3.13264310070288	2.36780956846984	3.52317408707276	3.15373656011188	3.73995494384323	4.06262183810715	0.920957901901332	0.11747607373096	0.537695040421181
Merged-chr6-29536961-4	chr6	29536878	29537078	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_012057, exon 9 of 9)	3' UTR (NM_012057, exon 9 of 9)	7696.0	NM_001252382	27056.0	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-108259399-2	chr9	108259299	108259499	+	550.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001276486, intron 1 of 3)	intron (NM_001276486, intron 1 of 3)	4416.0	NM_001276493	13138.0	Mm.7524	NM_010017	ENSMUSG00000039952	Dag1	D9Wsu13e|DG|Dp427|Dp71	dystroglycan 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-144267851-4	chr2	144267744	144267944	+	996.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024225, intron 1 of 12)	intron (NM_024225, intron 1 of 12)	-1642.0	NR_030762	100313519.0	Mm.453538	NR_030762	ENSMUSG00000077714	Snord17	MBI-43	small nucleolar RNA, C/D box 17	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-53723873-1	chr15	53723773	53723973	+	752.0	f0_balb.idr	intron (NM_177225, intron 2 of 4)	intron (NM_177225, intron 2 of 4)	-109594.0	NR_039538	100628567.0		NR_039538	ENSMUSG00000104794	Mir28c	mmu-mir-28c	microRNA 28c	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-80929223-2	chr18	80929123	80929323	+	568.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_015805, intron 1 of 28)	intron (NM_015805, intron 1 of 28)	4835.0	NM_001201569	50771.0	Mm.247138	NM_015805	ENSMUSG00000024566	Atp9b	AA934181|Atpc2b|IIb|MMR	ATPase, class II, type 9B	protein-coding	1.43425322497334	1.59117247642354	1.54126633023853	1.50178812764478	1.44446341851664	1.60223358842695	1.55239341107998	1.50874820892353	0.0376883455578028	0.972294549463913	0.998431161219273
Merged-chr8-120368431-2	chr8	120368331	120368531	+	738.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-120435.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-41999800-3	chr9	41999686	41999886	+	682.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357261, intron 26 of 42)	intron (NM_001357261, intron 26 of 42)	77427.0	NM_001357261	20660.0	Mm.121920	NM_011436	ENSMUSG00000049313	Sorl1	2900010L19Rik|AI596264|AW261561|LR11|SorLA|gp250|mSorLA	sortilin-related receptor, LDLR class A repeats-containing	protein-coding	3.00423550582107	2.43018135096774	1.92029377054928	1.47518366603752	2.97836789496245	1.57860349645008	1.2560202362267	2.39458684451664	-0.202440447427481	0.842787247896142	0.998431161219273
Merged-chr2-34752459-3	chr2	34752353	34752553	+	816.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151469, intron 2 of 26)	intron (NR_151469, intron 2 of 26)	2779.0	NM_001356441	66691.0	Mm.156452	NM_025709	ENSMUSG00000026867	Gapvd1	2010005B09Rik|4432404J10Rik|AW108497|Gapex-5|RAP6|RME-6|mKIAA1521	GTPase activating protein and VPS9 domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-39530362-2	chr6	39530262	39530462	+	784.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_172477, intron 1 of 18)	intron (NM_172477, intron 1 of 18)	27472.0	NM_172477	209773.0	Mm.440021	NM_172477	ENSMUSG00000038456	Dennd2a	B930096L08Rik|C130031G22|mKIAA1277	DENN/MADD domain containing 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153984174-2	chr2	153984074	153984274	+	720.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080811, intron 2 of 10)	intron (NM_001080811, intron 2 of 10)	9229.0	NM_001080811	545477.0	Mm.379973	NM_001080811	ENSMUSG00000078998	Bpifa6	EG545477|Gm5840|Splunc6	BPI fold containing family A, member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-172368959-4	chr1	172368895	172369095	+	922.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001039484, exon 2 of 2)	exon (NM_001039484, exon 2 of 2)	-7536.0	NM_026234	67556.0	Mm.26612	NM_026234	ENSMUSG00000050229	Pigm	4933437L05Rik|AI644422|AV302080|C920011G20Rik	phosphatidylinositol glycan anchor biosynthesis, class M	protein-coding	2.67334574652174	3.39586938451936	2.46168869052829	3.19548751604305	2.00355461929191	2.42056450251795	1.76299058764194	2.74028090986577	-1.38543491576174	0.0739756113123723	0.410891375174802
Merged-chr19-21897606-4	chr19	21897534	21897734	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	119294.0	NM_031997	83921.0	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	1.99690777715133	1.12080348030018	1.33479137364981	2.4331078680814	2.10026034893105	1.12598811059014	1.70789919459154	2.12343208710648	-0.042072271703967	0.971063748763788	0.998431161219273
Merged-chr4-124908380-3	chr4	124908275	124908475	+	859.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001256432, intron 8 of 16)	intron (NM_001256432, intron 8 of 16)	-13593.0	NR_040651	73628.0	Mm.398337	NR_040651	ENSMUSG00000085263	1700125G02Rik	-	RIKEN cDNA 1700125G02 gene	ncRNA	0.457009847978626	0.492856417492283	1.14947786310282	0.472298737452999	1.6591083622661	0.920096079320303	1.03065555390132	0.473886015413901	1.91316765833925	0.26473961988016	0.767392863122061
Merged-chr16-32608926-4	chr16	32608838	32609038	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011638)	promoter-TSS (NM_011638)	42.0	NM_011638	22042.0	Mm.28683	NM_011638	ENSMUSG00000022797	Tfrc	2610028K12Rik|CD71|E430033M20Rik|Mtvr1|TFR|TFR1|TR|Trfr|p90	transferrin receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19314928-2	chr7	19314828	19315028	+	795.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-4883.0	NM_001347586	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-3732819-4	chr16	3732714	3732914	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11285.0	NM_148924	74120.0	Mm.29081	NM_148924	ENSMUSG00000022529	Zfp263	1200014J04Rik|AI326880|AU020888|NT2|mFPM315	zinc finger protein 263	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-13426758-2	chr8	13426658	13426858	+	689.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8701.0	NM_001143671	272465.0	Mm.250502	NM_001143671	ENSMUSG00000038457	Tmem255b	Fam70b|Gm687	transmembrane protein 255B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-89034715-2	chr11	89034615	89034815	+	960.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	26033.0	NM_019505	56077.0	Mm.153695	NM_019505	ENSMUSG00000000276	Dgke	C87606|DAGK6|DGK	diacylglycerol kinase, epsilon	protein-coding	3.07028505460791	2.65715485548613	2.90854851409629	2.61860963875277	3.32992061946646	2.92296078786113	2.10310904914901	2.74214482717651	0.0540497161339167	0.939115212322957	0.998431161219273
Merged-chr2-30699950-4	chr2	30699858	30700058	+	977.30835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	-21252.0	NR_037272	100526499.0		NR_037272	ENSMUSG00000093091	Mir3089	mir-3089|mmu-mir-3089	microRNA 3089	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-38377000-4	chr16	38376901	38377101	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081984, intron 3 of 3)	MTC|LTR|ERVL-MaLR	14811.0	NM_022318	64082.0	Mm.390856	NM_022318	ENSMUSG00000022803	Popdc2	AV006127|Pop2	popeye domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-142493677-4	chr3	142493558	142493758	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3276.0	NM_153564	229898.0	Mm.459245	NM_153564	ENSMUSG00000105504	Gbp5	5330409J06Rik|Gbp5a	guanylate binding protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-105069144-2	chr12	105069044	105069244	+	762.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36526.0	NM_028419	73046.0	Mm.29128	NM_028419	ENSMUSG00000021102	Glrx5	-	glutaredoxin 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-55509984-4	chr16	55509869	55510069	+	862.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR23|LTR|ERV1	15238.0	NR_039578	100628589.0		NR_039578	ENSMUSG00000093292	Mir5118	mmu-mir-5118|mu-mir-5118	microRNA 5118	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-25679320-5	chr18	25679230	25679430	+	931.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001146295, exon 2 of 2)	exon (NM_001146295, exon 2 of 2)	418.0	NM_001362337	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4121570-4	chr19	4121478	4121678	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001276284)	promoter-TSS (NM_001276284)	-3.0	NM_001276284	11632.0	Mm.10433	NM_016666	ENSMUSG00000024847	Aip	AA408703|AW476050|Ara9|D19Bwg1412e|Fkbp16|Xap2	aryl-hydrocarbon receptor-interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-62667398-4	chr4	62667314	62667514	+	739.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134257, intron 10 of 15)	intron (NM_134257, intron 10 of 15)	-6560.0	NM_001310706	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78243398-2	chr15	78243298	78243498	+	626.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1413.0	NM_008677	17972.0	Mm.2068	NM_008677	ENSMUSG00000071715	Ncf4	AI451400|p40phox	neutrophil cytosolic factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-132852578-4	chr7	132852464	132852664	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347629)	promoter-TSS (NM_001347629)	83.0	NM_028095	72096.0	Mm.28631	NM_028095	ENSMUSG00000030960	Eef1akmt2	2010208K18Rik|Mettl10	EEF1A lysine methyltransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-86961232-2	chr3	86961160	86961360	+	739.5	f0_balb.idr|f1_balb.idr	Intergenic	RMER4B|LTR|ERVK	-25326.0	NM_001289449	12480.0	Mm.389465	NM_007640	ENSMUSG00000041750	Cd1d2	CD1.2|Cd1b|Ly-38	CD1d2 antigen	protein-coding	1.67185226174703	1.88663810722315	1.97417789860547	1.76612907012461	1.9510262837812	2.06397690760133	3.14686550588746	1.14645424673919	1.13053213567912	0.264974207749568	0.767681215270231
Merged-chr5-38479171-3	chr5	38479094	38479294	+	834.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145559, intron 2 of 10)	intron (NM_145559, intron 2 of 10)	1112.0	NM_001102414	117591.0	Mm.260137	NM_145559	ENSMUSG00000005107	Slc2a9	Glut9|SLC2A9B|SLC2a9A	solute carrier family 2 (facilitated glucose transporter), member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-5298614-4	chr9	5298527	5298727	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_009807, exon 1 of 10)	5' UTR (NM_009807, exon 1 of 10)	110.0	NM_009807	12362.0	Mm.1051	NM_009807	ENSMUSG00000025888	Casp1	ICE|Il1bc	caspase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-24813658-3	chr13	24813561	24813761	+	769.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_024473)	TTS (NM_024473)	12004.0	NM_024473	79555.0	Mm.266668	NM_024473	ENSMUSG00000019132	BC005537	8030460C05Rik|C78201	cDNA sequence BC005537	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-88432617-4	chr4	88432501	88432701	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025760, intron 3 of 6)	intron (NM_025760, intron 3 of 6)	6325.0	NM_025760	66775.0	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	4.49990596301434	3.97543556323679	4.6358344342313	3.80789612201738	4.34130095823183	4.72115912995951	3.51287220941178	4.09153048927338	-0.0583190090824432	0.896844372525631	0.998431161219273
Merged-chr11-83263275-2	chr11	83263175	83263375	+	778.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23451.0	NM_001166028	237890.0	Mm.297670	NM_001166028	ENSMUSG00000082101	Slfn14	Gm20|Slfn14-ps	schlafen 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-79088956-2	chr2	79088856	79089056	+	841.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-166470.0	NM_010576	16401.0	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-22358987-4	chr16	22358900	22359100	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	64012.0	NR_153764	100043507.0		NR_153764		Gng5-ps	Gm15776	G protein subunit gamma 5, pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-121736616-2	chr3	121736516	121736716	+	562.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13079.0	NM_010171	14066.0	Mm.273188	NM_010171	ENSMUSG00000028128	F3	AA409063|CD142|Cf-3|Cf3|TF	coagulation factor III	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-47276215-4	chr14	47276110	47276310	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080843)	promoter-TSS (NM_080843)	647.0	NM_001360532	218973.0	Mm.265615	NM_172598	ENSMUSG00000037572	Wdhd1	A630092E18|AND-1|D630024B06Rik	WD repeat and HMG-box DNA binding protein 1	protein-coding	1.98767988045002	3.00301041764167	1.75361620179448	3.52349958810737	2.60651193130515	2.42069935947294	2.72414886851571	2.63892995904261	-0.353945276608996	0.663277223026195	0.991657818949578
Merged-chr3-51482904-2	chr3	51482804	51483004	+	785.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR40a|LTR|ERVL	-1062.0	NM_016858	19338.0	Mm.1664	NM_016858	ENSMUSG00000027739	Rab33b	-	RAB33B, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-31921227-4	chr12	31921103	31921303	+	970.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163126, intron 21 of 22)	intron (NM_001163126, intron 21 of 22)	29042.0	NM_177993	73389.0	Mm.390461	NM_153198	ENSMUSG00000002996	Hbp1	1700058O05Rik|BE629963|C330012F01Rik|C86454	high mobility group box transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-45107759-4	chr2	45107677	45107877	+	982.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149354, intron 2 of 2)	intron (NR_149354, intron 2 of 2)	2500.0	NM_001289521	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-91660837-4	chr12	91660733	91660933	+	953.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 4 of 6)	intron (NM_175367, intron 4 of 6)	-70346.0	NM_175335	83602.0	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-109643686-2	chr7	109643586	109643786	+	636.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26539.0	NM_029811	76954.0	Mm.252009	NM_029811	ENSMUSG00000031024	St5	2010004M01Rik|2610305K15Rik	suppression of tumorigenicity 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-143168516-4	chr6	143168416	143168616	+	940.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029250, intron 1 of 7)	intron (NM_029250, intron 1 of 7)	1286.0	NM_029250	75320.0	Mm.272548	NM_029250	ENSMUSG00000030275	Etnk1	1110061E11Rik|4930555L11Rik|AI195356|AI841245|C80956|D6Ertd3e|EKI1	ethanolamine kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-103614354-7	chr5	103614235	103614435	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029415, intron 3 of 5)	intron (NM_029415, intron 3 of 5)	15068.0	NM_029415	75750.0	Mm.7446	NM_029415	ENSMUSG00000029321	Slc10a6	8430417G17Rik|C78479|Soat	solute carrier family 10 (sodium/bile acid cotransporter family), member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-77921937-3	chr14	77921828	77922028	+	649.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029495, intron 1 of 11)	B4A|SINE|B4	17689.0	NM_029495	108670.0	Mm.68134	NM_029495	ENSMUSG00000022014	Epsti1	2310046K10Rik|5033415K03Rik|BRESI1	epithelial stromal interaction 1 (breast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-13551215-4	chr8	13551101	13551301	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025601, intron 8 of 8)	intron (NM_025601, intron 8 of 8)	11260.0	NM_025601	66501.0	Mm.46136	NM_025601	ENSMUSG00000031452	1700029H14Rik	-	RIKEN cDNA 1700029H14 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-76493942-3	chr11	76493825	76494025	+	790.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198018, intron 1 of 21)	intron (NM_198018, intron 1 of 21)	570.0	NM_001346670	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	-1.17367364971587	-1.14665061133654	-1.15856004380685	-1.16834280623128	-1.17310571790619	-1.14406978763884	-0.42938571406771	-1.16659169643457	2.89727187181404	0.396361616615464	1
Merged-chr6-65143623-3	chr6	65143525	65143725	+	886.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019455, intron 1 of 5)	intron (NM_019455, intron 1 of 5)	1105.0	NM_019455	54486.0	Mm.410688	NM_019455	ENSMUSG00000029919	Hpgds	H-PGDS|Ptgds2	hematopoietic prostaglandin D synthase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45887615-2	chr7	45887515	45887715	+	660.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021482, intron 3 of 4)	intron (NM_021482, intron 3 of 4)	9096.0	NM_001291064	58867.0	Mm.214217	NM_021482	ENSMUSG00000040231	Syngr4	1700016O14Rik	synaptogyrin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167892879-2	chr2	167892874	167893074	+	795.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39353.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3880602-4	chr19	3880498	3880698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271496, intron 3 of 11)	intron (NM_001271496, intron 3 of 11)	24632.0	NM_016921	27060.0	Mm.271689	NM_016921	ENSMUSG00000001750	Tcirg1	ATP6N1C|ATP6a3|Atp6i|OC-116|OPTB1|Stv1|TIRC7|Vph1|oc	T cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 protein A3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-26414802-2	chr12	26414734	26414934	+	770.0	f0_c57.idr|f1_c57bl6.idr	TTS (NR_105856)	TTS (NR_105856)	176.0	NR_105856	102466676.0		NR_105856	ENSMUSG00000098771	Mir6538	Gm27439|mmu-mir-6538	microRNA 6538	ncRNA	1.57523934551445	1.02140988052452	2.04622116891761	0.985684353285501	1.15931035334313	1.92344150691839	1.85358162905368	1.9941332534516	0.844146132903747	0.48971175900639	0.934238891709291
Merged-chr14-29941095-1	chr14	29940995	29941195	+	760.0	f1_c57bl6.idr	Intergenic	Intergenic	-27285.0	NM_019979	80795.0	Mm.104491	NM_019979	ENSMUSG00000042682	Selenok	1110001C03Rik|AA673253|HSPC030|Hsp30|Selk	selenoprotein K	protein-coding	2.10634503968893	2.81226196060589	3.02310931884734	2.34246971208972	1.69053909980143	2.63340805784089	1.34669322996565	2.10165288578055	-1.30157446077268	0.149968291029384	0.602181912908483
Merged-chr2-156200042-3	chr2	156199941	156200141	+	842.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172674, intron 1 of 17)	intron (NM_172674, intron 1 of 17)	3394.0	NM_172674	228829.0	Mm.427078	NM_172674	ENSMUSG00000038116	Phf20	6820402O20Rik	PHD finger protein 20	protein-coding	4.52531599164208	4.60952695522885	3.08273974278551	3.20608706619086	2.95639539498879	3.64287639951215	2.98149133703641	3.32009460028647	-1.16124258243247	0.0478700284550028	0.31768160678872
Merged-chr10-67016825-2	chr10	67016725	67016925	+	692.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178606, intron 6 of 7)	intron (NM_178606, intron 6 of 7)	11750.0	NR_110511	102634101.0	Mm.445258	NR_110511	ENSMUSG00000112925	Gm31763	-	predicted gene, 31763	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-33914388-2	chr17	33914288	33914488	+	814.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355704, intron 7 of 7)	RMER4A|LTR|ERVK	-1788.0	NM_020625	81630.0	Mm.482096	NM_020625	ENSMUSG00000051390	Zbtb22	1110008J20Rik|AI265210|AI415166|Bing1|Zfp297	zinc finger and BTB domain containing 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-43260943-4	chr6	43260898	43261098	+	829.016663	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA4|LINE|L1	-4646.0	NM_133674	54324.0	Mm.320978	NM_133674	ENSMUSG00000033542	Arhgef5	2210412D05Rik|AA717842|AW495314|Tim1	Rho guanine nucleotide exchange factor (GEF) 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-28043141-2	chr5	28043041	28043241	+	919.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28271.0	NM_153526	231070.0	Mm.30221	NM_153526	ENSMUSG00000045294	Insig1	1810013C12Rik|Insig-1	insulin induced gene 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-70829369-4	chr17	70829287	70829487	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17390.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32502064-4	chr2	32501969	32502169	+	824.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33290.0	NM_153560	98952.0	Mm.4065	NM_153560	ENSMUSG00000039157	Fam102a	AI426465|C230093N12Rik|Eeig1	family with sequence similarity 102, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-13552565-2	chr10	13552465	13552665	+	938.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025748)	promoter-TSS (NM_025748)	-342.0	NM_025748	66757.0	Mm.331841	NM_025748	ENSMUSG00000019808	Adat2	4933426M09Rik|Deadc1	adenosine deaminase, tRNA-specific 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-38937944-2	chr6	38937844	38938044	+	900.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 1 of 12)	MER96|DNA|hAT-Tip100	18958.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-134730146-4	chr4	134730064	134730264	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER20B|LTR|ERVK	-25874.0	NM_207237	230815.0	Mm.18905	NM_207237	ENSMUSG00000037306	Man1c1	AI593348	mannosidase, alpha, class 1C, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-32197898-4	chr5	32197805	32198005	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34803.0	NM_030072	665270.0	Mm.160067	NM_030072	ENSMUSG00000029134	Plb1	4632413E21Rik|4930433E17Rik|4930539A06Rik|BC033606	phospholipase B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80249163-4	chr10	80249117	80249317	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029272)	promoter-TSS (NM_029272)	-235.0	NM_029272	75406.0	Mm.28712	NM_029272	ENSMUSG00000020153	Ndufs7	1010001M04Rik	NADH dehydrogenase (ubiquinone) Fe-S protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99025889-2	chr15	99025789	99025989	+	609.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4002.0	NM_009448	22146.0	Mm.88212	NM_009448	ENSMUSG00000043091	Tuba1c	M[a]6|Tuba6	tubulin, alpha 1C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-65660842-2	chr3	65660902	65661102	+	593.125	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	1714.0	NR_106200	102465905.0		NR_106200	ENSMUSG00000098944	Mir8120	Gm27637|mmu-mir-8120	microRNA 8120	ncRNA	1.71284247582403	1.80893431945974	1.60712506715172	1.23386592892469	1.19216538400169	1.06190409865527	2.26261617042256	2.02133324944976	0.439834335949072	0.704211424851218	0.998431161219273
Merged-chr15-36505685-2	chr15	36505585	36505785	+	779.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347022, intron 13 of 13)	intron (NM_001347022, intron 13 of 13)	-8894.0	NM_175134	68839.0	Mm.396537	NM_175134	ENSMUSG00000048307	Ankrd46	1110054N06Rik|AI314978|AI987733	ankyrin repeat domain 46	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-40523003-4	chr3	40522861	40523061	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040445)	promoter-TSS (NR_040445)	-49.0	NR_040445	100040882.0	Mm.272869	NR_040445	ENSMUSG00000037884	1700017G19Rik	-	RIKEN cDNA 1700017G19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-75370691-1	chr7	75370591	75370791	+	710.666687	f0_balb.idr	Intergenic	Intergenic	-61429.0	NM_153579	64176.0	Mm.273082	NM_153579	ENSMUSG00000053025	Sv2b	A830038F04Rik|AI850768|mKIAA0735	synaptic vesicle glycoprotein 2 b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129504808-3	chr4	129504703	129504903	+	726.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8778.0	NM_010807	17357.0	Mm.424974	NM_010807	ENSMUSG00000047945	Marcksl1	AL022768|AW215397|AW536807|D4Bc1|F52|MacMARCKS|Macs2|Macs3|Mlp|Mrp	MARCKS-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45277436-4	chr7	45277347	45277547	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-5426.0	NM_001033176	76713.0	Mm.425445	NM_001033176	ENSMUSG00000070568	Slc6a21	1700039E15Rik|Gm19188	solute carrier family 6 member 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115237953-4	chr5	115237843	115238043	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_026398, exon 2 of 6)	5' UTR (NM_026398, exon 2 of 6)	2092.0	NM_026398	117109.0	Mm.24636	NM_026398	ENSMUSG00000060152	Pop5	1500019J17Rik|2700077E03Rik|AW049989|Rnasep3	processing of precursor 5, ribonuclease P/MRP family (S. cerevisiae)	protein-coding	3.87137959650491	3.8975163929143	4.7650064333056	3.88260688090502	4.30494703431399	4.35867351195037	5.01099104337608	3.67480466000548	0.335030109493396	0.467608534800459	0.923770669682091
Merged-chr17-47629507-4	chr17	47629393	47629593	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1197.0	NM_198421	224836.0	Mm.59393	NM_198421	ENSMUSG00000090115	Usp49	C330046L10Rik|Gm545	ubiquitin specific peptidase 49	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-110709238-2	chr12	110709138	110709338	+	795.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-12843.0	NM_010480	15519.0	Mm.1843	NM_010480	ENSMUSG00000021270	Hsp90aa1	86kDa|89kDa|AL024080|AL024147|Hsp86-1|Hsp89|Hsp90|Hspca|hsp4	heat shock protein 90, alpha (cytosolic), class A member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-104025617-3	chr5	104025496	104025696	+	735.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3800.0	NM_053262	114664.0	Mm.46019	NM_053262	ENSMUSG00000029311	Hsd17b11	Dhrs8|Pan1b|SDR2|retSDR2	hydroxysteroid (17-beta) dehydrogenase 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-37344661-3	chr1	37344489	37344689	+	963.875	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030266, intron 1 of 25)	intron (NM_030266, intron 1 of 25)	-24628.0	NM_172971	269180.0	Mm.5294	NM_030266	ENSMUSG00000026113	Inpp4a	107kDa|9630012D15|D130048C09Rik|R74740	inositol polyphosphate-4-phosphatase, type I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-121370575-4	chr3	121370470	121370670	+	983.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55971.0	NM_028044	71994.0	Mm.275555	NM_028044	ENSMUSG00000053931	Cnn3	1600014M03Rik|C85854|Calpo3	calponin 3, acidic	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-41501030-3	chr13	41500924	41501124	+	753.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13664.0	NM_001111324	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-31312387-2	chr10	31312287	31312487	+	707.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1018.0	NM_027168	69692.0	Mm.245537	NM_027168	ENSMUSG00000000295	Hddc2	2310057G13Rik	HD domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-7857042-3	chr6	7856946	7857146	+	659.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_052993, intron 1 of 3)	RMER20C_Mm|LTR|ERVK	11822.0	NM_052993	94192.0	Mm.102752	NM_052993	ENSMUSG00000042460	C1galt1	2210410E06Rik|AV284120|T-synthase	core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-24727698-4	chr10	24727598	24727798	+	808.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15539.0	NM_008813	18605.0	Mm.27254	NM_008813	ENSMUSG00000037370	Enpp1	4833416E15Rik|AI428932|C76301|CD203c|E-NPP 1|E-NPP1|Ly-41|M6S1|NPP1|Npps|PC-1|Pca|Pca-1|Pdnp1|ttw|twy	ectonucleotide pyrophosphatase/phosphodiesterase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-92821203-4	chr16	92821050	92821250	+	991.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111022, intron 2 of 6)	MLT1C|LTR|ERVL-MaLR	4924.0	NM_001111021	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-106721707-4	chr3	106721616	106721816	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039488)	promoter-TSS (NM_001039488)	34.0	NM_001286685	321000.0	Mm.259638	NM_028081	ENSMUSG00000056260	Lrif1	2010012G17Rik|4933421E11Rik|AI450568	ligand dependent nuclear receptor interacting factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-12900126-1	chr15	12900026	12900226	+	652.0	f1_c57bl6.idr	intron (NM_026799, intron 22 of 34)	intron (NM_026799, intron 22 of 34)	75311.0	NM_001130149	14000.0	Mm.293142	NM_026799	ENSMUSG00000022191	Drosha	1110013A17Rik|AI874853|Etohi2|Rn3|Rnasen	drosha, ribonuclease type III	protein-coding	-0.144218802494328	-0.129593975404378	0.425942416399873	0.387165558580937	-0.143307274419412	0.227375952261225	-0.133333166618449	-0.137442129868043	-1.88105409990811	0.431034715089677	1
Merged-chr12-76950504-4	chr12	76950402	76950602	+	947.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361663, intron 3 of 4)	intron (NM_001361663, intron 3 of 4)	11746.0	NM_008558	17187.0	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100761838-4	chr11	100761728	100761928	+	957.31665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010410, exon 2 of 2)	exon (NM_010410, exon 2 of 2)	1103.0	NM_010410	15171.0	Mm.10096	NM_010410	ENSMUSG00000045471	Hcrt	PPOX	hypocretin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116827491-2	chr11	116827391	116827591	+	603.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347633, intron 1 of 4)	intron (NM_001347633, intron 1 of 4)	555.0	NM_026280	67622.0	Mm.64962	NM_026280	ENSMUSG00000020814	Mxra7	1810057P16Rik|E130302J09Rik	matrix-remodelling associated 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-136965309-4	chr6	136965212	136965412	+	992.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10789.0	NM_023898	78600.0	Mm.290622	NM_023898	ENSMUSG00000064330	Pde6h	A930033D18Rik|PDEgamma	phosphodiesterase 6H, cGMP-specific, cone, gamma	protein-coding	4.68434226944813	4.9163293364329	4.40132410362051	3.92067462927342	4.158075430607	4.82035741355758	3.83362032394346	4.45531765089859	-0.213310448142853	0.609844154500908	0.974992433107985
Merged-chr2-83714958-4	chr2	83714872	83715072	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9425.0	NM_008402	16410.0	Mm.227	NM_008402	ENSMUSG00000027087	Itgav	1110004F14Rik|2610028E01Rik|CD51|D430040G12Rik	integrin alpha V	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4302420-4	chr19	4302308	4302508	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290818, intron 1 of 20)	intron (NM_001290818, intron 1 of 20)	3814.0	NM_130863	110355.0	Mm.254144	NM_130863	ENSMUSG00000024858	Grk2	Adrbk-1|Adrbk1|Bark-1|beta ARK|betaARK1	G protein-coupled receptor kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-15189447-3	chr10	15189347	15189547	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	429158.0	NM_008703	18101.0	Mm.487342	NM_008703	ENSMUSG00000019865	Nmbr	BB182387	neuromedin B receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-51817952-4	chr11	51817874	51818074	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357588, intron 12 of 12)	intron (NM_001357588, intron 12 of 12)	39507.0	NM_199299	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28831530-2	chr7	28831430	28831630	+	879.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_016772, intron 8 of 9)	intron (NM_016772, intron 8 of 9)	-2264.0	NM_010706	16855.0	Mm.210336	NM_010706	ENSMUSG00000053964	Lgals4	gal-4	lectin, galactose binding, soluble 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-135161489-4	chr6	135161381	135161581	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013546, intron 1 of 3)	MIR3|SINE|MIR	6734.0	NM_013546	15199.0	Mm.378937	NM_013546	ENSMUSG00000042770	Hebp1	Hebp|p22HBP	heme binding protein 1	protein-coding	2.36372382561427	2.7523124556279	2.33543627463494	2.38583696615193	1.3453230715121	2.77251424583454	2.35357787855631	2.39804564780081	-0.33307224330744	0.703783733295591	0.998431161219273
Merged-chr3-137992476-4	chr3	137992299	137992499	+	788.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10850.0	NM_011932	26377.0	Mm.254835	NM_011932	ENSMUSG00000028159	Dapp1	Bam32	dual adaptor for phosphotyrosine and 3-phosphoinositides 1	protein-coding	0.605443432954293	0.513197819749821	0.183442797142151	0.328852895303394	0.421701137528518	0.520294789961238	0.349032051031124	0.180248740574742	-0.354800508390872	0.844037011912396	1
Merged-chr9-58581533-4	chr9	58581503	58581703	+	874.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009145)	promoter-TSS (NM_009145)	-637.0	NM_001293673	20320.0	Mm.15125	NM_009145	ENSMUSG00000032336	Nptn	AW554172|SDR-1|Sdfr1	neuroplastin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-3501287-4	chr5	3501192	3501392	+	993.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 5 of 7)	intron (NM_009873, intron 5 of 7)	-42541.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-84101062-3	chr12	84101043	84101243	+	892.5238039999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172580, exon 1 of 3)	exon (NM_172580, exon 1 of 3)	489.0	NM_172580	217700.0	Mm.49245	NM_172580	ENSMUSG00000043487	Acot6	4632408A20Rik|A330054B07|BE688602	acyl-CoA thioesterase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-61257729-4	chr9	61257619	61257819	+	984.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	36090.0	NR_045334	622037.0	Mm.126243	NR_045334	ENSMUSG00000111658	B930092H01Rik	-	RIKEN cDNA B930092H01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-60269346-4	chr14	60269296	60269496	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144843, intron 1 of 13)	intron (NM_144843, intron 1 of 13)	4191.0	NM_144843	219135.0	Mm.247007	NM_144843	ENSMUSG00000021987	Mtmr6	4022440C11Rik|AI428804|AU041072	myotubularin related protein 6	protein-coding	5.21242049571856	5.20633491299917	5.50062394575991	4.75917491664253	4.76168515716627	5.60934731982514	5.36122132252915	5.87049796503607	0.301540380110941	0.352256632902316	0.852434760027623
Merged-chr2-158864112-4	chr2	158864066	158864266	+	926.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	69359.0	NM_001291144	71715.0	Mm.315652	NM_145742	ENSMUSG00000027655	Dhx35	1200009D07Rik|Ddx35	DEAH (Asp-Glu-Ala-His) box polypeptide 35	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-103071153-4	chr14	103071036	103071236	+	997.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033242, intron 1 of 3)	intron (NM_001033242, intron 1 of 3)	920.0	NM_001033242	211286.0	Mm.295289	NM_001033242	ENSMUSG00000022125	Cln5	A730075N08Rik	ceroid-lipofuscinosis, neuronal 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-72038120-2	chr11	72038020	72038220	+	582.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053245)	promoter-TSS (NM_053245)	-611.0	NM_053245	114230.0	Mm.95707	NM_053245	ENSMUSG00000040554	Aipl1	A930007I01Rik	aryl hydrocarbon receptor-interacting protein-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47834320-2	chr17	47834220	47834420	+	620.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001109973, exon 1 of 5)	5' UTR (NM_001109973, exon 1 of 5)	371.0	NM_001109973	17240.0	Mm.329100	NM_010783	ENSMUSG00000032717	Mdfi	I-mf|I-mfa	MyoD family inhibitor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-62404910-3	chr4	62404784	62404984	+	718.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139291, intron 1 of 3)	RMER1B|Other|Other	3739.0	NM_139291	66440.0	Mm.109930	NM_139291	ENSMUSG00000066149	Cdc26	2010012C09Rik	cell division cycle 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-32532844-3	chr11	32532747	32532947	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359177)	promoter-TSS (NM_001359177)	-419.0	NM_001359178	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106640420-2	chr11	106640296	106640496	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27466.0	NM_198292	21763.0	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	-0.702312242540109	-0.693450061004827	-0.696370373205989	-0.544310136588067	-0.342522164174275	-0.69278953670099	-0.695727679544283	-0.29235372316723	2.17781160937052	0.428359346649788	1
Merged-chr14-55644348-6	chr14	55644219	55644419	+	854.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028780)	promoter-TSS (NM_028780)	-513.0	NM_028780	74140.0	Mm.132857	NM_028780	ENSMUSG00000002320	Tm9sf1	1200014D02Rik|AI893436|MP70	transmembrane 9 superfamily member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-133047466-4	chr7	133047382	133047582	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009980, intron 2 of 10)	intron (NM_009980, intron 2 of 10)	-32235.0	NM_001170744	13017.0	Mm.246240	NM_009980	ENSMUSG00000030970	Ctbp2	AA407280|D7Ertd45e|Gtrgeo6|Ribeye	C-terminal binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-103356356-2	chr11	103356256	103356456	+	763.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205236, intron 3 of 17)	intron (NM_001205236, intron 3 of 17)	7336.0	NM_183288	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-89486102-4	chr4	89486010	89486210	+	964.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132431, intron 7 of 9)	intron (NR_132431, intron 7 of 9)	-175078.0	NM_007670	12579.0	Mm.423094	NM_007670	ENSMUSG00000073802	Cdkn2b	AV083695|INK4b|MTS2|p15|p15(INK4b)|p15INK4b	cyclin dependent kinase inhibitor 2B	protein-coding	1.76237416383406	1.05758928823819	1.70004688060493	1.38740922377586	1.68430625621191	1.47683743907824	2.02743060897296	1.39360940425092	0.535222168140958	0.63900000400983	0.982599433509505
Merged-chr13-46906141-4	chr13	46906053	46906253	+	981.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010617, intron 2 of 37)	intron (NM_010617, intron 2 of 37)	23565.0	NM_010617	16553.0	Mm.342703	NM_010617	ENSMUSG00000021375	Kif13a	4930505I07Rik|mKIAA4109	kinesin family member 13A	protein-coding	3.58454166154202	3.43993788334952	4.20755073468808	3.63836604380028	3.41300380852502	3.9634264202347	2.54119350705773	3.85100549092576	-0.302630817377086	0.585254443287781	0.967268722441911
Merged-chr4-116074293-2	chr4	116074193	116074393	+	972.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153521)	promoter-TSS (NM_153521)	777.0	NM_025641	66576.0	Mm.181721	NM_025641	ENSMUSG00000063882	Uqcrh	2210416J04Rik|2310021J10Rik|2610041P16Rik	ubiquinol-cytochrome c reductase hinge protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-20898009-2	chr9	20897909	20898109	+	916.7999880000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_016876, intron 3 of 10)	intron (NM_016876, intron 3 of 10)	581.0	NM_016876	53356.0	Mm.427309	NM_016876	ENSMUSG00000070319	Eif3g	44kDa|D0Jmb4|Eif3s4|TU-189B2|eIF3-p44|p44	eukaryotic translation initiation factor 3, subunit G	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-38260486-4	chr5	38260350	38260550	+	978.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001356960, exon 1 of 5)	exon (NM_001356960, exon 1 of 5)	265.0	NM_025480	66309.0	Mm.256185	NM_025480	ENSMUSG00000067365	Tmem128	2810021O14Rik	transmembrane protein 128	protein-coding	5.73202222023384	5.21058383402605	5.35231272462834	4.6877653269643	4.93712490865099	5.04396553666774	5.12712211983187	4.41666992484638	-0.468529709909219	0.16739853029472	0.633485087165721
Merged-chr5-115513899-4	chr5	115513767	115513967	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011223, intron 1 of 10)	intron (NM_011223, intron 1 of 10)	7191.0	NM_133915	19303.0	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	5.53781457830268	6.11714789330062	6.85270920398074	5.93564718416237	6.5541578046416	5.68686692686873	6.95847711574966	6.86829507255979	0.441162270617265	0.139800519193972	0.583891841247138
Merged-chr12-110765554-2	chr12	110765454	110765654	+	714.541626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347428, intron 1 of 2)	intron (NM_001347428, intron 1 of 2)	27622.0	NM_001347428	69641.0	Mm.475762	NM_027149	ENSMUSG00000037957	Wdr20	2310040A13Rik|AI549910|Wdr20a	WD repeat domain 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-86344008-2	chr1	86343908	86344108	+	555.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_010880)	TTS (NM_010880)	7277.0	NR_028478	100303740.0	Mm.154378	NR_028478	ENSMUSG00000064837	Snora75	MBI-55	small nucleolar RNA, H/ACA box 75	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-172438639-2	chr2	172438539	172438739	+	617.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-1939.0	NM_025542	66404.0	Mm.25157	NM_025542	ENSMUSG00000027502	Rtf2	1700067C04Rik|2410001C21Rik|5730427M17Rik|AA589417|Rtfdc1	replication termination factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-60764105-3	chr18	60764077	60764277	+	740.133362	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F2|SINE|Alu	-10419.0	NM_020600	20044.0	Mm.43778	NM_020600	ENSMUSG00000024608	Rps14	2600014J02Rik|AL023078	ribosomal protein S14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44869929-4	chr7	44869847	44870047	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133949)	promoter-TSS (NM_133949)	-159.0	NM_133949	84113.0	Mm.42855	NM_133949	ENSMUSG00000038502	Ptov1	1110030G05Rik|AU041779|Gcap3	prostate tumor over expressed gene 1	protein-coding	6.42179714894815	6.26169711923339	6.29471925059119	6.50033925972678	6.32675573951823	6.27827473387066	5.8480267105761	6.3859343025538	-0.160062600828152	0.451752175265576	0.918146120638574
Merged-chr11-17953891-4	chr11	17953792	17953992	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_131916)	promoter-TSS (NR_131916)	-17.0	NM_026576	68145.0	Mm.178684	NM_026576	ENSMUSG00000016984	Etaa1	5730466H23Rik|AA672646	Ewing tumor-associated antigen 1	protein-coding	4.41047670520095	3.12081677772899	3.77501583198798	4.18545980550048	3.70605089815467	3.688707325883	2.7394002759993	3.82415568253768	-0.59356742615776	0.271931744563038	0.775341509331591
Merged-chr19-41090058-2	chr19	41089958	41090158	+	653.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011904, intron 18 of 20)	intron (NM_011904, intron 18 of 20)	-12945.0	NM_153520	226115.0	Mm.54119	NM_153520	ENSMUSG00000050121	Opalin	Tmem10|Tmp10	oligodendrocytic myelin paranodal and inner loop protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-4240530-2	chr12	4240430	4240630	+	841.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001204912)	TTS (NM_001204912)	6503.0	NM_001204912	69709.0	Mm.250552	NM_001204912	ENSMUSG00000096199	Ptrhd1	2410017P09Rik	peptidyl-tRNA hydrolase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-110105047-2	chr5	110104947	110105147	+	845.6666869999999	f1_balb.idr|f1_c57bl6.idr	exon (NM_145147, exon 7 of 10)	exon (NM_145147, exon 7 of 10)	3150.0	NM_145147	107999.0	Mm.86267	NM_145147	ENSMUSG00000033434	Gtpbp6	AV119224|Pgbpll|pgpl	GTP binding protein 6 (putative)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-43629638-2	chr17	43629538	43629738	+	825.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001161367, exon 1 of 5)	exon (NM_001161367, exon 1 of 5)	661.0	NM_001161366	210510.0	Mm.329058	NM_198418	ENSMUSG00000040140	Tdrd6	AB097085|Tdr2	tudor domain containing 6	protein-coding	-1.53362919331644	-1.50201671710775	-1.51157659084044	-1.08120497225282	-1.53141005593807	-1.49994505258991	-1.50941244497383	-1.51802371459528	-1.94474658522739	0.577200604274218	1
Merged-chr10-91237038-2	chr10	91236938	91237138	+	834.083313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16419.0	NR_151510	102633753.0	Mm.416936	NR_151510		4930534H03Rik	-	RIKEN cDNA 4930534H03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-37412971-4	chr4	37412870	37413070	+	975.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	163567.0	NR_151605	102636890.0	Mm.109154	NR_151605	ENSMUSG00000086026	Gm12374	-	predicted gene 12374	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-6380101-4	chr2	6379997	6380197	+	916.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181399, intron 1 of 13)	intron (NM_181399, intron 1 of 13)	27361.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69055925-2	chr11	69055825	69056025	+	986.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3850.0	NM_028005	71923.0	Mm.340257	NM_028005	ENSMUSG00000045176	Borcs6	2310047M10Rik	BLOC-1 related complex subunit 6	protein-coding	1.08858043130514	0.71870664285288	1.41374629362988	1.0238190290356	1.09818615653383	0.721004376884298	1.42712163631124	1.02908240634092	0.0386359899573967	0.978334005401801	0.998431161219273
Merged-chr4-49038618-2	chr4	49038518	49038718	+	570.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13B|LTR|ERVK	-20844.0	NM_178756	272031.0	Mm.299460	NM_178756	ENSMUSG00000063446	Plppr1	E130309F12Rik|Lppr1|PRG-3|mKIAA4247	phospholipid phosphatase related 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-41029803-1	chr15	41029703	41029903	+	612.0	f0_balb.idr	intron (NM_001356998, intron 4 of 6)	intron (NM_001356998, intron 4 of 6)	-143898.0	NR_151516	100418302.0		NR_151516		4930555K19Rik	-	leucine rich repeat and sterile alpha motif containing 1 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-131281667-3	chr6	131281551	131281751	+	907.466675	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	11593.0	NM_001327860	66441.0	Mm.46623	NM_025564	ENSMUSG00000030188	Magohb	2010012C16Rik|Mago|Magoh|Magoh-rs1	mago homolog B, exon junction complex core component	protein-coding	3.58205329749631	4.04714267919069	3.46857498048943	3.64744465924008	2.38997501275257	2.70435817453995	3.23207319450102	2.92256686046429	-1.39829091523753	0.0170062963600029	0.159158770458123
Merged-chr2-158145607-4	chr2	158145499	158145699	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009373, intron 1 of 12)	intron (NM_009373, intron 1 of 12)	793.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-50381783-4	chr6	50381662	50381862	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163645, intron 2 of 21)	MER5B|DNA|hAT-Charlie	1075.0	NM_027881	71720.0	Mm.44153	NM_027881	ENSMUSG00000029822	Osbpl3	1200014M06Rik|6720421I08Rik|A530055M08|ORP-3|ORP3|OSBP3	oxysterol binding protein-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-96697730-2	chr15	96697630	96697830	+	594.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355633, intron 3 of 14)	intron (NM_001355633, intron 3 of 14)	1998.0	NM_001355633	67760.0	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152589708-2	chr1	152589608	152589808	+	621.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346119, intron 2 of 17)	intron (NM_001346119, intron 2 of 17)	35509.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-121816674-2	chr5	121816574	121816774	+	664.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008507, exon 8 of 8)	3' UTR (NM_008507, exon 8 of 8)	2599.0	NR_105998	102465624.0		NR_105998	ENSMUSG00000099063	Mir7031	Gm27859|mmu-mir-7031	microRNA 7031	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123436334-4	chr5	123436202	123436402	+	991.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133917, intron 1 of 16)	intron (NM_133917, intron 1 of 16)	41504.0	NM_177582	208104.0	Mm.83277	NM_133917	ENSMUSG00000038342	Mlxip	AW228700|Mir|bHLHe36	MLX interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-105225801-4	chr4	105225705	105225905	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080555, intron 5 of 5)	L2c|LINE|L2	68458.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-101943946-2	chr5	101943846	101944046	+	764.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_172882, exon 11 of 67)	exon (NM_172882, exon 11 of 67)	125975.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70131325-4	chr8	70131241	70131441	+	978.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_104434)	promoter-TSS (NR_104434)	14.0	NM_001025587	75692.0	Mm.161167	NM_001025586	ENSMUSG00000071078	Nr2c2ap	2310073E15Rik	nuclear receptor 2C2-associated protein	protein-coding	4.34569412461824	3.57610975303773	3.88011822972821	4.5531941233816	3.920745744062	4.3661109145609	3.7545370263111	3.92846000352091	-0.198313485877026	0.663208369726397	0.991657818949578
Merged-chr11-77410074-4	chr11	77409966	77410166	+	976.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291190, intron 4 of 13)	intron (NM_001291190, intron 4 of 13)	-53847.0	NM_139129	216961.0	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-68119924-4	chr18	68119810	68120010	+	854.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172631, intron 3 of 5)	RMER19B|LTR|ERVK	-108036.0	NM_001357444	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	2.21007736665664	2.88058655618875	2.41683204733609	3.90500327714413	3.04535058942583	1.43363414992852	1.91413282292141	2.20930094779681	-1.35657918792035	0.119200729847784	0.54133905095587
Merged-chr19-55908449-2	chr19	55908349	55908549	+	844.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001331147, exon 6 of 14)	exon (NM_001331147, exon 6 of 14)	13128.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-55511818-2	chr9	55511731	55511931	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_145615, intron 1 of 11)	CpG	412.0	NM_145615	110842.0	Mm.290853	NM_145615	ENSMUSG00000032314	Etfa	2010200I21Rik|D9Ertd394e	electron transferring flavoprotein, alpha polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-12371371-4	chr15	12371246	12371446	+	965.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081064, intron 20 of 23)	intron (NM_001081064, intron 20 of 23)	49850.0	NM_025673	66629.0	Mm.157655	NM_025673	ENSMUSG00000022200	Golph3	4733401N08Rik|5730410D03Rik|AW413496	golgi phosphoprotein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-43789200-4	chr13	43789106	43789306	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009856, intron 2 of 4)	intron (NM_009856, intron 2 of 4)	4094.0	NM_001289915	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166047765-2	chr2	166047665	166047865	+	572.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008679, intron 3 of 22)	intron (NM_008679, intron 3 of 22)	55128.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	0.0361558064357608	0.0522158469862282	0.599852013654729	0.042886329105766	0.17902073926397	0.244739618438665	0.610797061159098	0.20527837541578	0.813650292123562	0.682554004988537	1
Merged-chr11-116430476-2	chr11	116430388	116430588	+	812.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-3606.0	NM_176902	319370.0	Mm.258466	NM_176902	ENSMUSG00000050628	Ubald2	1110014K08Rik|D030012E24Rik|Fam100b	UBA-like domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-92675897-2	chr5	92675797	92675997	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177230)	promoter-TSS (NM_177230)	-626.0	NM_001360019	320696.0	Mm.209991	NM_177230	ENSMUSG00000050050	Ccdc158	4932413O14Rik	coiled-coil domain containing 158	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-72398389-2	chr2	72398289	72398489	+	579.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001164791, exon 11 of 12)	exon (NM_001164791, exon 11 of 12)	-77830.0	NM_025866	66953.0	Mm.270676	NM_025866	ENSMUSG00000055612	Cdca7	2310021G01Rik|AU044109|JPO1	cell division cycle associated 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-57574621-4	chr8	57574528	57574728	+	947.591675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167981, intron 2 of 11)	intron (NM_001167981, intron 2 of 11)	62785.0	NM_008252	97165.0	Mm.276881	NM_008252	ENSMUSG00000054717	Hmgb2	C80539|HMG-2|Hmg2	high mobility group box 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101986642-2	chr15	101986542	101986742	+	594.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	17700.0	NM_031170	16691.0	Mm.358618	NM_031170	ENSMUSG00000049382	Krt8	AA960620|AL022697|AU019895|Card2|EndoA|K8|Krt-2.8|Krt2-8	keratin 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-97738155-4	chr7	97738082	97738282	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175105)	promoter-TSS (NM_175105)	65.0	NM_175105	66333.0	Mm.29756	NM_175105	ENSMUSG00000042797	Aqp11	1700015P13Rik|AI648923|sjds	aquaporin 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-91252698-4	chr1	91252684	91252884	+	810.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355764, intron 1 of 10)	intron (NM_001355764, intron 1 of 10)	2218.0	NM_001355764	67921.0	Mm.337238	NM_026454	ENSMUSG00000034343	Ube2f	2510010F15Rik|AI851109	ubiquitin-conjugating enzyme E2F (putative)	protein-coding	1.27660998344018	1.79696051005628	0.866780275290139	1.34652386128697	1.67562328266166	1.44989883211788	0.869858675143806	1.21400896725629	-0.0997778678778188	0.939560947517938	0.998431161219273
Merged-chr10-60282252-4	chr10	60282189	60282389	+	945.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011179, intron 1 of 14)	intron (NM_011179, intron 1 of 14)	-2172.0	NM_001146124	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-75696424-2	chr16	75696324	75696524	+	551.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	70394.0	NR_027492	110920.0	Mm.26704	NM_030201	ENSMUSG00000032932	Hspa13	1600002I10Rik|AV006182|B230217N24Rik|Stch	heat shock protein 70 family, member 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135904013-2	chr5	135903913	135904113	+	929.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16094.0	NM_013560	15507.0	Mm.13849	NM_013560	ENSMUSG00000004951	Hspb1	27kDa|Hsp25	heat shock protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-132085991-3	chr3	132085922	132086122	+	745.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_020265, exon 1 of 4)	5' UTR (NM_020265, exon 1 of 4)	730.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-125321661-4	chr10	125321570	125321770	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358496, intron 1 of 5)	intron (NM_001358496, intron 1 of 5)	7293.0	NM_011391	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-94313446-4	chr16	94313338	94313538	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139145, intron 1 of 10)	CpG	125.0	NM_139145	110948.0	Mm.30921	NM_139145	ENSMUSG00000040820	Hlcs	410I21.SP6|D16Jhu34	holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-30772378-4	chr11	30772282	30772482	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134013, intron 1 of 46)	CpG	607.0	NM_134013	103554.0	Mm.240066	NM_134013	ENSMUSG00000040850	Psme4	AA409398|AU041366|TEMO|mKIAA0077	proteasome (prosome, macropain) activator subunit 4	protein-coding	4.40027461536159	4.91707255960928	4.13258798447817	3.88649057245472	3.90704306606361	5.06096200583499	3.79823773908254	3.83470909110518	-0.165299912557833	0.724680154855561	0.998431161219273
Merged-chr4-155066152-4	chr4	155066059	155066259	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001042407)	promoter-TSS (NM_001042407)	-871.0	NM_001042407	668173.0	Mm.133114	NM_001042407	ENSMUSG00000029047	Pex10	AV128229|Gm142	peroxisomal biogenesis factor 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129622095-4	chr2	129621998	129622198	+	825.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355158, intron 7 of 8)	intron (NM_001355158, intron 7 of 8)	26636.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	1.01302591399855	0.443165928191213	1.14070889106243	0.428062821792465	0.418670242636703	0.445074620563471	1.04678762805862	0.886316189667623	-0.361640129893996	0.840777738635068	1
Merged-chr5-151233690-4	chr5	151233562	151233762	+	841.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-43469.0	NR_153382	243362.0	Mm.209272	NM_146258	ENSMUSG00000016128	Stard13	DLC2|GT650	StAR-related lipid transfer (START) domain containing 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-13523722-3	chr13	13523632	13523832	+	834.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66677.0	NM_010748	17101.0	Mm.342337	NM_010748	ENSMUSG00000019726	Lyst	D13Sfk13|beige|bg	lysosomal trafficking regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153060309-4	chr2	153060201	153060401	+	855.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5654.0	NM_145536	228788.0	Mm.299979	NM_145536	ENSMUSG00000027474	Ccm2l	-	cerebral cavernous malformation 2-like	protein-coding	3.1996562714969	2.68487525850906	1.78184293190832	2.63068835201981	2.61245424786547	2.43206375526696	2.35211346839838	3.07020509752649	-0.0579646124759584	0.940939393218361	0.998431161219273
Merged-chr16-43890883-2	chr16	43890783	43890983	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027801, intron 1 of 15)	intron (NM_027801, intron 1 of 15)	981.0	NM_027801	212153.0	Mm.209835	NM_027801	ENSMUSG00000022701	Ccdc191	2610015P09Rik|8430422M09Rik|AU040712	coiled-coil domain containing 191	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-93567873-2	chr10	93567764	93567964	+	614.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359749, intron 6 of 13)	intron (NM_001359749, intron 6 of 13)	12983.0	NM_001359749	237465.0	Mm.477086	NM_175488	ENSMUSG00000036168	Ccdc38	4933417K05Rik	coiled-coil domain containing 38	protein-coding	-0.840765188318848	-0.828820091557137	-0.833647072137853	-0.836319491836079	-0.840103136375236	-0.825874151001496	-0.640423694632345	-0.0745584918573654	3.25267216038727	0.264297595094015	1
Merged-chr6-28730029-2	chr6	28729929	28730129	+	577.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019776, intron 14 of 23)	T-rich|Low_complexity|Low_complexity	101718.0	NM_138682	192198.0	Mm.443660	NM_138682	ENSMUSG00000049939	Lrrc4	MBAG1|NGL-2|NGL2|NLG-2|Nag14	leucine rich repeat containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-4314012-2	chr12	4313912	4314112	+	875.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_010881, intron 8 of 22)	MTC|LTR|ERVL-MaLR	79985.0	NM_001204912	69709.0	Mm.250552	NM_001204912	ENSMUSG00000096199	Ptrhd1	2410017P09Rik	peptidyl-tRNA hydrolase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141015473-4	chr4	141015376	141015576	+	649.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161799, intron 8 of 8)	intron (NM_001161799, intron 8 of 8)	4839.0	NM_008546	17150.0	Mm.7386	NM_008546	ENSMUSG00000060572	Mfap2	AI893631|Magp|Magp1	microfibrillar-associated protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-58700153-3	chr2	58700070	58700270	+	872.633301	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289660, intron 1 of 7)	intron (NM_001289660, intron 1 of 7)	-55014.0	NM_001289659	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-92028900-1	chr5	92028800	92029000	+	574.0	f0_balb.idr	intron (NM_001276315, intron 6 of 12)	B4|SINE|B4	13796.0	NM_001276315	53886.0	Mm.44963	NM_016912	ENSMUSG00000029403	Cdkl2	5330436L21Rik|AI505225|KKIAMRE|Kkm	cyclin-dependent kinase-like 2 (CDC2-related kinase)	protein-coding	0.626729864780986	1.27823260212008	0.485400998558331	0.477857628480878	1.09837690857563	0.714274851501217	0.487545802133555	1.27222512843277	0.775699131642879	0.641330083903821	1
Merged-chr18-38248034-2	chr18	38247934	38248134	+	692.166626	f1_balb.idr|f1_c57bl6.idr	intron (NR_015475, intron 1 of 3)	L2c|LINE|L2	2164.0	NR_015475	73516.0	Mm.48776	NR_015475	ENSMUSG00000097080	1700086O06Rik	-	RIKEN cDNA 1700086O06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-78481100-4	chr10	78481013	78481213	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16165.0	NM_172134	216134.0	Mm.206159	NM_172134	ENSMUSG00000032788	Pdxk	2310036D04Rik|AA119688|C77999	pyridoxal (pyridoxine, vitamin B6) kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-118662218-3	chr14	118662125	118662325	+	935.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033336, intron 3 of 30)	intron (NM_001033336, intron 3 of 30)	14706.0	NM_001163675	239273.0	Mm.40537	NM_001033336	ENSMUSG00000032849	Abcc4	ABCC4-N1|D630049P08Rik|MOATB|MRP4	ATP-binding cassette, sub-family C (CFTR/MRP), member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-12729017-4	chr18	12728910	12729110	+	992.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028341, intron 9 of 13)	intron (NM_028341, intron 9 of 13)	-12345.0	NM_181731	71132.0	Mm.179740	NM_027687	ENSMUSG00000024430	Cabyr	1700016C01Rik|4933421A18Rik|CBP86|FSP-2	calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-94618942-2	chr15	94618842	94619042	+	581.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10243.0	NM_178789	320709.0	Mm.74873	NM_178789	ENSMUSG00000063296	Tmem117	B930062P21Rik	transmembrane protein 117	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-173020052-4	chr2	173019970	173020170	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1832.0	NM_019547	56190.0	Mm.485782	NM_019547	ENSMUSG00000027510	Rbm38	Rnpc1|Seb4|Seb4l	RNA binding motif protein 38	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-102573006-4	chr11	102572901	102573101	+	838.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6118.0	NR_040286	100040792.0	Mm.277966	NR_040286	ENSMUSG00000078640	Gm11627	-	predicted gene 11627	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-3186806-4	chr11	3186724	3186924	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030207, intron 3 of 32)	intron (NM_030207, intron 3 of 32)	6639.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69766145-9	chr11	69766055	69766255	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029348, intron 1 of 3)	CpG	243.0	NM_029348	75580.0	Mm.426361	NM_029348	ENSMUSG00000018750	Zbtb4	2310026P19Rik|9230111I22Rik|mKIAA1538	zinc finger and BTB domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27680715-4	chr2	27680624	27680824	+	906.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011305, intron 1 of 9)	intron (NM_011305, intron 1 of 9)	3523.0	NM_011305	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72431407-3	chr6	72431278	72431478	+	649.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_019802)	TTS (NM_019802)	-7305.0	NR_046011	78108.0	Mm.440743	NR_046011	ENSMUSG00000108591	Particl	4930414L22Rik|AI449819	promoter of Mat2a antisense radiation induced circulating long non-coding RNA	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99451923-2	chr15	99451823	99452023	+	790.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001884, intron 1 of 12)	intron (NM_001001884, intron 1 of 12)	5825.0	NM_001001884	380969.0	Mm.22915	NM_001001884	ENSMUSG00000023009	Nckap5l	C230021P08Rik|Cep169	NCK-associated protein 5-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-121302708-2	chr9	121302633	121302833	+	683.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_152160, intron 1 of 17)	B3A|SINE|B2	5231.0	NR_152160	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	-1.50485614052657	-1.4728793633067	-1.48254940467209	-1.49049266456696	-1.5026114298908	-1.47078382500327	-1.32820642235787	-1.18476303102282	2.06059569883262	0.550131326880388	1
Merged-chr8-71882010-4	chr8	71881887	71882087	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145624)	promoter-TSS (NM_145624)	-81.0	NM_145624	236193.0	Mm.290790	NM_145624	ENSMUSG00000056019	Zfp709	BC021921|GIOT-4|HIT-40	zinc finger protein 709	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-10645913-3	chr8	10645792	10645992	+	920.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	236562.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-27681597-4	chr15	27681501	27681701	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001242423)	promoter-TSS (NM_001242423)	-59.0	NM_001242423	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-67723968-3	chr13	67723878	67724078	+	943.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145622, intron 1 of 3)	intron (NM_145622, intron 1 of 3)	5195.0	NM_145622	235907.0	Mm.440123	NM_145622	ENSMUSG00000071281	Zfp65	KRAB5|Zfp71-rs1|pz114	zinc finger protein 65	protein-coding	0.96607780742538	1.62839730455326	1.82863236555642	1.65778296444342	0.969984096398965	1.64082031578888	2.14170754588392	1.66672305056796	0.36332769306965	0.766517479448171	0.998431161219273
Merged-chr7-104167376-4	chr7	104167239	104167439	+	855.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2523.0	NM_172905	244180.0	Mm.17149	NM_172905	ENSMUSG00000044265	Olfm5	E030002O03Rik	olfactomedin 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-87584876-3	chr16	87584744	87584944	+	870.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144854, intron 4 of 4)	intron (NM_144854, intron 4 of 4)	31514.0	NM_144854	224419.0	Mm.194466	NM_144854	ENSMUSG00000025610	Map3k7cl	C21orf7|ORF63|Tak1l	Map3k7 C-terminal like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-17653525-2	chr16	17653425	17653625	+	551.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_033609, exon 15 of 18)	exon (NM_033609, exon 15 of 18)	7055.0	NM_001166164	72315.0	Mm.297777	NM_001166164	ENSMUSG00000041617	Ccdc74a	2310015A05Rik	coiled-coil domain containing 74A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-41355112-2	chr4	41355012	41355212	+	563.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355508, intron 1 of 6)	intron (NM_001355508, intron 1 of 6)	3149.0	NM_001355508	67123.0	Mm.289795	NM_023305	ENSMUSG00000028437	Ubap1	2700092A01Rik|NAG20|UBAP-1|Ubap	ubiquitin-associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-105213438-4	chr4	105213327	105213527	+	757.233337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080555, intron 4 of 5)	intron (NM_080555, intron 4 of 5)	56080.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-103309640-2	chr12	103309540	103309740	+	610.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	5129.0	NR_136894	102632488.0	Mm.109435	NR_136894	ENSMUSG00000100789	Gm29508	-	predicted gene 29508	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-95935732-2	chr16	95935632	95935832	+	727.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6655.0	NR_040484	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118788810-2	chr9	118788710	118788910	+	569.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 3 of 13)	RLTR53_Mm|LTR|ERVK	77118.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64852883-4	chr5	64852773	64852973	+	981.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Arthur1|DNA|hAT-Tip100	49350.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-112126063-1	chr12	112125963	112126163	+	543.0	f1_balb.idr	intron (NM_001081169, intron 13 of 14)	(TG)n|Simple_repeat|Simple_repeat	-4817.0	NR_029590	387199.0		NR_029590	ENSMUSG00000065574	Mir203	Mirn203|mir-203|mmu-mir-203	microRNA 203	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-29274501-2	chr6	29274401	29274601	+	961.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023516, intron 1 of 1)	intron (NM_023516, intron 1 of 1)	1875.0	NM_023516	69573.0	Mm.45161	NM_023516	ENSMUSG00000043421	Hilpda	2310016C08Rik|AW049004|Hig2	hypoxia inducible lipid droplet associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-23598136-3	chr5	23598035	23598235	+	927.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152854, intron 2 of 14)	MTC|LTR|ERVL-MaLR	18436.0	NM_001359175	20817.0	Mm.288728	NM_009274	ENSMUSG00000062604	Srpk2	AW226533|AW492537|AW547358|Wbp6|mSRPK2	serine/arginine-rich protein specific kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-87282848-4	chr17	87282822	87283022	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015506)	promoter-TSS (NR_015506)	36.0	NM_028639	225049.0	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167828484-2	chr2	167828384	167828584	+	594.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-103843.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-30981836-3	chr13	30981744	30981944	+	690.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7797.0	NM_025588	66482.0	Mm.293510	NM_025588	ENSMUSG00000021357	Exoc2	2410030I24Rik|AI648199|Sec5|Sec5l1	exocyst complex component 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-32658604-1	chr4	32658504	32658704	+	673.0	f1_balb.idr	intron (NM_001081392, intron 1 of 101)	intron (NM_001081392, intron 1 of 101)	1485.0	NM_001081392	100019.0	Mm.24627	NM_133874	ENSMUSG00000058006	Mdn1	4833432B22Rik|A130070M06|AA958993|D4Abb1e|Gm135	midasin AAA ATPase 1	protein-coding	0.855141601462819	0.104056723942849	0.0946548468649634	0.0872828029893377	0.262764339840158	0.106153113528245	1.36093162173789	0.0885783625431539	1.24112362446691	0.543176726221454	1
Merged-chr17-36824232-4	chr17	36824122	36824322	+	823.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR30|LTR|ERV1	12047.0	NM_201611	399549.0	Mm.329034	NM_201611	ENSMUSG00000037130	H2-M10.6	-	histocompatibility 2, M region locus 10.6	protein-coding	2.65942032712889	3.15032343177641	2.15817836787375	2.88517092131778	2.28119663739476	1.83008015668299	2.98996864019892	2.51670475898854	-0.573054410961109	0.465031265508769	0.922521920152562
Merged-chr5-148550568-4	chr5	148550454	148550654	+	997.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359199, intron 3 of 6)	intron (NM_001359199, intron 3 of 6)	1119.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-43283380-4	chr7	43283259	43283459	+	893.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29941.0	NM_001357812	69930.0	Mm.45367	NM_027264	ENSMUSG00000012640	Zfp715	2610041B18Rik|mszf15	zinc finger protein 715	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-133661903-3	chr1	133661768	133661968	+	811.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166552)	promoter-TSS (NM_001166552)	-469.0	NM_001276767	70579.0	Mm.245357	NM_144530	ENSMUSG00000102976	Zc3h11a	1110003F06Rik|5730454B08Rik|G630041M05Rik|Zc3hdc11a|Zc3hh11a|mKIAA0663	zinc finger CCCH type containing 11A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-148989693-4	chr6	148989603	148989803	+	938.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177192, exon 21 of 21)	3' UTR (NM_177192, exon 21 of 21)	-43233.0	NM_001361398	56306.0	Mm.18637	NM_019643	ENSMUSG00000039985	Fam60a	Ppcs1|Pptcs1|Sinhcaf|Tera	family with sequence similarity 60, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-38863609-4	chr12	38863500	38863700	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347379, intron 11 of 11)	intron (NM_001347379, intron 11 of 11)	79889.0	NM_001163154	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-79965094-2	chr13	79964994	79965194	+	637.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	-918290.0	NR_153410	105171.0	Mm.423137	NM_001042591	ENSMUSG00000074794	Arrdc3	AI450344|mKIAA1376	arrestin domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-78215981-3	chr16	78215888	78216088	+	906.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	T-rich|Low_complexity|Low_complexity	39466.0	NR_045698	100503619.0	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-113220749-4	chr12	113220643	113220843	+	895.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34840.0	NM_153776	69195.0	Mm.313244	NM_153776	ENSMUSG00000049036	Tmem121	2410008J05Rik|Hole	transmembrane protein 121	protein-coding	2.12528487375675	3.69622617707104	4.24018462771967	3.77421218844484	4.38537088084459	4.29556563839564	3.97875939876272	3.86005726407246	0.69318074849187	0.207918365564159	0.69660308394772
Merged-chr4-155217583-4	chr4	155217478	155217678	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011385, intron 1 of 6)	intron (NM_011385, intron 1 of 6)	4957.0	NM_011385	20481.0	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-43753212-8	chr19	43753107	43753307	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144874)	promoter-TSS (NM_144874)	184.0	NM_025530	66388.0	Mm.20257	NM_025530	ENSMUSG00000025193	Cutc	2310039I18Rik|AI326282|CGI-32	cutC copper transporter	protein-coding	2.82658840902329	2.53903449586829	2.99392336021188	2.67665622352503	1.53376194104114	1.42277908923456	2.34764103622619	2.27385716084461	-1.80268120462032	0.0376244018352312	0.275815217852813
Merged-chr9-47744048-4	chr9	47744015	47744215	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	74093.0	NR_046048	100038460.0	Mm.447649	NR_046048		Gm10677	-	predicted gene 10677	ncRNA	4.7402530255198	4.8766743113548	3.84270146066843	3.88007700087092	4.91674002934631	2.78074245358498	4.33882313891819	4.41620910320376	-0.124874637411982	0.805610729539709	0.998431161219273
Merged-chr13-23465540-2	chr13	23465440	23465640	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013483, intron 1 of 7)	intron (NM_013483, intron 1 of 7)	361.0	NM_013483	12231.0	Mm.1420	NM_013483	ENSMUSG00000000706	Btn1a1	Btn	butyrophilin, subfamily 1, member A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70812651-6	chr11	70812562	70812762	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001045526)	promoter-TSS (NM_001045526)	-101.0	NM_001045526	327957.0	Mm.164325	NM_001045526	ENSMUSG00000057135	Scimp	A430084P05Rik	SLP adaptor and CSK interacting membrane protein	protein-coding	2.5786315772356	2.99802829660011	1.7397894717579	1.90651436543982	3.11739968946646	2.81361394473738	3.3069877108728	2.09925300399717	0.972844630169628	0.227112624991358	0.71997232966636
Merged-chr17-47214287-4	chr17	47214179	47214379	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001097623, intron 3 of 19)	MIR3|SINE|MIR	-15951.0	NM_172622	224829.0	Mm.260989	NM_172622		Trerf1	9430096I18Rik|AI429294|B830015H24|RAPA|Trep-132|Trep132	transcriptional regulating factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-25137252-2	chr17	25137106	25137306	+	731.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001317404, intron 1 of 24)	intron (NM_001317404, intron 1 of 24)	575.0	NM_001317404	26373.0	Mm.270587	NM_011930	ENSMUSG00000036636	Clcn7	ClC-7|D17Wsu51e	chloride channel, voltage-sensitive 7	protein-coding	0.713340363660554	0.378271337629147	0.538395392071315	0.653638719343589	0.81570489495386	0.564826575421898	0.373462070669786	0.878144004207548	0.634806197353915	0.704977273678319	1
Merged-chr7-46548356-2	chr7	46548256	46548456	+	814.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013789, intron 9 of 10)	B4A|SINE|B4	91451.0	NM_013789	27414.0	Mm.76659	NM_013789	ENSMUSG00000030839	Sergef	DelGEF|Gef|Gnef|Gnefr	secretion regulating guanine nucleotide exchange factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-30869433-3	chr14	30869343	30869543	+	780.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028839, intron 4 of 7)	intron (NM_028839, intron 4 of 7)	-9814.0	NM_181390	66175.0	Mm.220895	NM_181390	ENSMUSG00000042485	Mustn1	1110028G01Rik|Mustang	musculoskeletal, embryonic nuclear protein 1	protein-coding	-1.50625708474172	-1.47450015558371	-1.18188810879543	-1.49199236114635	-1.35376801888298	-1.47241902461194	-1.48192967816727	-1.49058029691424	-0.80106305596974	0.819335975698342	1
Merged-chr8-128685704-4	chr8	128685695	128685895	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010578, exon 1 of 16)	5' UTR (NM_010578, exon 1 of 16)	141.0	NM_010578	16412.0	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-99255021-1	chr13	99254921	99255121	+	590.0	f0_balb.idr	Intergenic	Intergenic	70198.0	NM_001004149	238803.0	Mm.343207	NM_001004149	ENSMUSG00000050919	Zfp366	DC-SCRIPT|Znf366	zinc finger protein 366	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-103122805-3	chr4	103122707	103122907	+	836.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039081, intron 1 of 12)	intron (NM_001039081, intron 1 of 12)	3417.0	NM_001039081	71148.0	Mm.288721	NM_027696	ENSMUSG00000028522	Mier1	4933425I22Rik|5830411K19Rik|er1	MEIR1 treanscription regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-35333755-2	chr2	35333655	35333855	+	976.2000119999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_013515, intron 1 of 6)	B1_Mur4|SINE|Alu	3254.0	NM_013515	13830.0	Mm.295284	NM_013515	ENSMUSG00000026880	Stom	Epb7.2	stomatin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-61389657-3	chr3	61389563	61389763	+	670.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25156.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-27709426-4	chr15	27709357	27709557	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27915.0	NM_001242423	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-95157859-4	chr4	95157745	95157945	+	939.116699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-105623.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-18694299-8	chr2	18694181	18694381	+	997.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-4741.0	NM_001001334	381350.0	Mm.330024	NM_001001334	ENSMUSG00000037708	Spag6	Spag6l	sperm associated antigen 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-69130100-2	chr12	69130000	69130200	+	701.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29086.0	NM_009093	20090.0	Mm.379006	NM_009093	ENSMUSG00000034892	Rps29	-	ribosomal protein S29	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-36903526-3	chr15	36903427	36903627	+	782.472229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	103875.0	NM_026521	68036.0	Mm.371631	NM_026521	ENSMUSG00000062397	Zfp706	3110006P09Rik|AA793007|AW536850|C77232|Znf706	zinc finger protein 706	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5004554-3	chr17	5004436	5004636	+	674.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 1 of 19)	intron (NM_001085355, intron 1 of 19)	9462.0	NM_001085355	239985.0	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-151228569-4	chr1	151228513	151228713	+	884.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	90579.0	NR_038011	402734.0	Mm.337666	NR_038011		C730036E19Rik	lncLSTR	RIKEN cDNA C730036E19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-62893467-4	chr14	62893296	62893496	+	857.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175546, intron 2 of 11)	intron (NM_175546, intron 2 of 11)	27854.0	NR_105860	102465311.0		NR_105860	ENSMUSG00000098858	Mir6541	Gm27311|mmu-mir-6541	microRNA 6541	ncRNA	1.59653588159971	1.56281427885155	2.03813904454618	2.57825320973502	2.46487340691677	2.12526077032281	2.59348372249989	1.48851676693529	0.52366759094714	0.587278732190996	0.967978662388709
Merged-chr11-118402915-2	chr11	118402815	118403015	+	678.075012	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011150)	promoter-TSS (NM_011150)	-956.0	NM_011150	19039.0	Mm.3152	NM_011150	ENSMUSG00000033880	Lgals3bp	90K|CyCAP|MAC-2BP|Ppicap|Tango10b	lectin, galactoside-binding, soluble, 3 binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-33779496-4	chr17	33779373	33779573	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020581, intron 3 of 6)	intron (NM_020581, intron 3 of 6)	2102.0	NM_020581	57875.0	Mm.196189	NM_020581	ENSMUSG00000002289	Angptl4	Arp4|Bk89|Fiaf|Hfarp|Ng27|Pgar|Pgarg|Pp1158	angiopoietin-like 4	protein-coding	2.25032414846906	1.66624989528518	2.36261882948962	1.15499463594419	1.9038620977614	1.2069062051715	2.06865618604436	2.38973903210014	0.0284597298396593	0.979350210618027	0.998431161219273
Merged-chr2-18056977-4	chr2	18056881	18057081	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_106115)	promoter-TSS (NR_106115)	-865.0	NR_106115	102466840.0		NR_106115	ENSMUSG00000099050	Mir7655	Gm27794|mmu-mir-7655	microRNA 7655	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-99412380-2	chr10	99412280	99412480	+	770.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	149149.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-62351810-2	chr14	62351710	62351910	+	620.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026001, intron 4 of 10)	intron (NM_026001, intron 4 of 10)	19742.0	NM_026001	67153.0	Mm.26040	NM_026001	ENSMUSG00000021932	Rnaseh2b	1110019N06Rik|2610207P08Rik|Dleu8	ribonuclease H2, subunit B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140514117-4	chr5	140514015	140514215	+	981.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021528, intron 1 of 1)	B4A|SINE|B4	8506.0	NM_021528	59031.0	Mm.28934	NM_021528	ENSMUSG00000036599	Chst12	AI595374|C4S-2|C4ST2	carbohydrate sulfotransferase 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-78688037-2	chr17	78687974	78688174	+	860.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011500, intron 3 of 17)	intron (NM_011500, intron 3 of 17)	48486.0	NM_011500	268980.0	Mm.311915	NM_011500	ENSMUSG00000024077	Strn	AU022939|D130055P19	striatin, calmodulin binding protein	protein-coding	2.29408841351127	2.44044373257199	3.28056081517927	2.77328603882311	1.84421647997816	3.17511718478681	3.61745176454626	1.94389127034859	0.218066326798695	0.787187503033659	0.998431161219273
Merged-chr11-96910260-4	chr11	96910196	96910396	+	918.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030248, intron 10 of 13)	intron (NM_030248, intron 10 of 13)	6218.0	NM_001308183	80280.0	Mm.28297	NM_030248	ENSMUSG00000018669	Cdk5rap3	1810007E24Rik|BC002318|C53|C81486|HSF-27|IC53|LZAP|MST016	CDK5 regulatory subunit associated protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116919456-2	chr11	116919356	116919556	+	824.166626	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_172948, exon 1 of 17)	5' UTR (NM_172948, exon 1 of 17)	593.0	NM_172948	268510.0	Mm.35141	NM_172948	ENSMUSG00000043857	Mgat5b	C330018B01|GnT-IX|mGnTVB	mannoside acetylglucosaminyltransferase 5, isoenzyme B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-88939173-4	chr9	88939042	88939242	+	944.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17778.0	NM_009742	12044.0	Mm.425593	NM_009742	ENSMUSG00000102037	Bcl2a1a	A1|BB218357|Bcl2a1|Bfl-1|Hbpa1	B cell leukemia/lymphoma 2 related protein A1a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36676597-2	chr18	36676497	36676697	+	602.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_146085, intron 6 of 11)	intron (NM_146085, intron 6 of 11)	-2618.0	NM_001360989	67843.0	Mm.273350	NM_026404	ENSMUSG00000033272	Slc35a4	2610030J16Rik	solute carrier family 35, member A4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-17788427-1	chr2	17788327	17788527	+	854.0	f0_balb.idr	Intergenic	Intergenic	-57359.0	NM_028757	74103.0	Mm.120298	NM_028757	ENSMUSG00000053702	Nebl	1200007O21Rik|A630080F05Rik|BB140644|D830029A09Rik|Lnebl	nebulette	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122470207-2	chr8	122470107	122470307	+	984.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001033142, exon 2 of 6)	exon (NM_001033142, exon 2 of 6)	5857.0	NM_001033142	68718.0	Mm.34356	NM_001033142	ENSMUSG00000014470	Rnf166	1110031E24Rik|AW555115|Zfp313l	ring finger protein 166	protein-coding	1.09207134231051	1.96896124876824	2.02797409661783	2.50453917412479	1.09744881979045	1.98408712981573	2.04464761491077	1.97889169929455	-0.446605694264316	0.690852390614865	0.996768576110068
Merged-chr17-29010093-3	chr17	29009993	29010193	+	881.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER4B|LTR|ERVK	-2098.0	NM_001357173	106504.0	Mm.439986	NM_134115	ENSMUSG00000024006	Stk38	5830476G13Rik|9530097A09Rik|AA617404|Ndr1	serine/threonine kinase 38	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-93212914-2	chr2	93212814	93213014	+	642.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183180, intron 5 of 9)	intron (NM_183180, intron 5 of 9)	25366.0	NM_001025246	277414.0	Mm.41033	NM_001025246	ENSMUSG00000068735	Trp53i11	Tp53i11	transformation related protein 53 inducible protein 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44837092-4	chr7	44836961	44837161	+	968.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001171024, intron 4 of 8)	intron (NM_001171024, intron 4 of 8)	773.0	NM_010215	14204.0	Mm.2565	NM_010215	ENSMUSG00000074141	Il4i1	Fig1|Fig1-ps|LAAO|LAO	interleukin 4 induced 1	protein-coding	-0.191401501171535	0.24026161693894	0.0942863674899825	-0.187289317607522	0.134563513596539	-0.180745652257195	-0.184058533816891	-0.0462646086892792	-0.662313548527643	0.772108130257135	1
Merged-chr17-70967832-4	chr17	70967730	70967930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22686.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-126229516-2	chr4	126229416	126229616	+	587.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2c|LINE|L2	26803.0	NM_144941	245877.0	Mm.266716	NM_144941	ENSMUSG00000028849	Map7d1	AV028413|BC019977|Mtap7d1|Parcc1|Rprc1|mKIAA1187	MAP7 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-59345898-2	chr2	59345798	59345998	+	900.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 17 of 20)	intron (NM_175464, intron 17 of 20)	40784.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-16638683-5	chr11	16638663	16638863	+	976.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-113440.0	NM_207655	13649.0	Mm.8534	NM_007912	ENSMUSG00000020122	Egfr	9030024J15Rik|AI552599|Erbb|Errb1|Errp|Wa5|wa-2|wa2	epidermal growth factor receptor	protein-coding	1.77386293647044	2.86898355568615	2.07011786648419	1.26572195195108	2.04531743037439	2.15903142073857	2.54359106448422	2.15027317067927	0.222085483795132	0.817242326263601	0.998431161219273
Merged-chr6-116228971-4	chr6	116228879	116229079	+	939.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026585, intron 15 of 30)	intron (NM_026585, intron 15 of 30)	20946.0	NM_026585	28006.0	Mm.28524	NM_026585	ENSMUSG00000024104	Washc2	A130095H06|C530005J20Rik|D6Wsu116e|Fam21	WASH complex subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-21336391-3	chr12	21336283	21336483	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291871, intron 11 of 18)	intron (NM_001291871, intron 11 of 18)	19991.0	NM_026347	67732.0	Mm.335830	NM_026347	ENSMUSG00000062054	Iah1	1500019E20Rik|4833421E05Rik	isoamyl acetate-hydrolyzing esterase 1 homolog	protein-coding	4.52470078168199	4.11045136266924	5.06856765674826	4.86890023170821	5.11730024149623	4.93084821676278	4.86876960596129	5.86198257104839	0.679736047845027	0.0639178574266493	0.376786662334558
Merged-chr7-12881112-4	chr7	12881002	12881202	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153802)	promoter-TSS (NM_153802)	-76.0	NM_153802	243833.0	Mm.293823	NM_153802	ENSMUSG00000060397	Zfp128	9630016P15Rik|Znf8|mZnf8	zinc finger protein 128	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-66332393-4	chr8	66332286	66332486	+	977.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175188, intron 4 of 7)	Lx8b|LINE|L1	-53915.0	NM_001166375	72925.0	Mm.380457	NM_175188	ENSMUSG00000036469	March1	2900024D24Rik|BB085186	membrane-associated ring finger (C3HC4) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-111964356-2	chr13	111964256	111964456	+	790.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	96420.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-73008598-2	chr6	73008498	73008698	+	716.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49850.0	NM_001190327	19240.0	Mm.3532	NM_025284	ENSMUSG00000079523	Tmsb10	Ptmb10|Tb10	thymosin, beta 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-162631275-1	chr1	162631175	162631375	+	687.0	f0_balb.idr	Intergenic	Intergenic	-7875.0	NM_010865	17926.0	Mm.10694	NM_010865	ENSMUSG00000026697	Myoc	AI957332|GLC1A|TIGR	myocilin	protein-coding	-1.29633872064033	-1.26720680975202	-1.27768629845203	-1.28629446248818	-0.70879630402184	-1.2649358608345	-1.2753139719142	-1.28475360524138	2.50884260628271	0.468217847016783	1
Merged-chr8-31148985-4	chr8	31148858	31149058	+	807.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1358.0	NM_144927	234138.0	Mm.349800	NM_144927	ENSMUSG00000031577	Tti2	-	TELO2 interacting protein 2	protein-coding	2.34893786598762	1.96240957956976	1.40797469986345	2.33343350264709	1.87657712467093	1.45520601587927	1.91099616347806	1.38269956558145	-1.11814895850461	0.276073573126086	0.780106154113701
Merged-chr10-26996182-3	chr10	26996088	26996288	+	959.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008481, intron 57 of 63)	intron (NM_008481, intron 57 of 63)	223676.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-174086533-4	chr2	174086423	174086623	+	954.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001102424, intron 2 of 8)	intron (NM_001102424, intron 2 of 8)	9472.0	NM_001102423	228960.0	Mm.277977	NM_172675	ENSMUSG00000027522	Stx16	4930401D03|5430410K23Rik|6330500A18Rik|AI648908|AW553605|Syn16	syntaxin 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-124577658-3	chr2	124577562	124577762	+	869.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290997, intron 5 of 20)	intron (NM_001290997, intron 5 of 20)	-32634.0	NM_199238	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-87447633-2	chr11	87447533	87447733	+	941.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199293, intron 2 of 30)	intron (NM_001199293, intron 2 of 30)	20042.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-115034185-3	chr7	115034083	115034283	+	793.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	82909.0	NR_040319	101786.0	Mm.395157	NR_040317	ENSMUSG00000108379	A730082K24Rik	AU044236	RIKEN cDNA A730082K24 gene	ncRNA	1.4588146467836	0.786863301578876	1.0001729200527	1.43692954556773	0.736832723139351	1.80805036094	2.00933218886366	0.758761647897371	0.909053156658098	0.525379752014781	0.948340152465298
Merged-chr4-93334710-4	chr4	93334623	93334823	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_026954, exon 1 of 1)	3' UTR (NM_026954, exon 1 of 1)	788.0	NM_026954	69136.0	Mm.171558	NM_026954	ENSMUSG00000054000	Tusc1	2200001D17Rik|TSG-9	tumor suppressor candidate 1	protein-coding	5.26775561730194	5.28693519480447	5.29932374845127	5.2907688340786	5.22881751421871	5.99623811979404	5.36682062641604	4.87074244087572	0.152593823769386	0.620767486249561	0.979324117529246
Merged-chr12-96155953-2	chr12	96155853	96156053	+	742.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-108731.0	NR_103800	69423.0	Mm.46121	NM_027076		1700019M22Rik	-	NFX-like protein	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91526725-4	chr2	91526629	91526829	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001165989)	promoter-TSS (NM_001165989)	-33.0	NM_001165989	75786.0	Mm.168478	NM_029437	ENSMUSG00000040549	Ckap5	3110043H24Rik|4930432B04Rik|D730027C18Rik|T25636|mKIAA0097	cytoskeleton associated protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-29156182-4	chr7	29156093	29156293	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146023)	promoter-TSS (NM_001146023)	17.0	NM_001146023	73833.0	Mm.260890	NM_028661	ENSMUSG00000030590	Fam98c	1110006G06Rik|AI836081|AV026483|B230110F21Rik	family with sequence similarity 98, member C	protein-coding	4.4701703156935	4.59172272900318	4.16763283880171	4.28247195316085	4.34210080756793	4.39863692697979	4.57999084302063	4.24961134989434	0.0115683705567398	0.975860786820345	0.998431161219273
Merged-chr4-3743986-3	chr4	3743887	3744087	+	942.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 4 of 12)	MIRb|SINE|MIR	29023.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	2.53324881101268	2.13592161793863	1.41381266987788	1.87522097462604	2.55503124590193	1.46581866099227	1.94687606754985	1.15096978806603	-0.367672721437815	0.732576603521443	0.998431161219273
Merged-chr1-39581564-2	chr1	39581464	39581664	+	826.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C2|LTR|ERVK	-4217.0	NM_001033135	67702.0	Mm.28614	NM_001033135	ENSMUSG00000048234	Rnf149	1600023E10Rik|AV037261|C76763|Gm15832|Greul4	ring finger protein 149	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-111939521-2	chr8	111939421	111939621	+	811.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1182.0	NM_026693	93739.0	Mm.371666	NM_026693	ENSMUSG00000031950	Gabarapl2	0610012F20Rik|2900019O08Rik|AI173605|GATE-16|Gef2	gamma-aminobutyric acid (GABA) A receptor-associated protein-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126754961-4	chr7	126754778	126754978	+	938.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur2|SINE|Alu	-4748.0	NM_011952	26417.0	Mm.8385	NM_011952	ENSMUSG00000063065	Mapk3	Erk-1|Erk1|Ert2|Esrk1|Mnk1|Mtap2k|Prkm3|p44|p44erk1|p44mapk	mitogen-activated protein kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-120466736-4	chr6	120466619	120466819	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008359, intron 1 of 12)	intron (NM_008359, intron 1 of 12)	3522.0	NM_008359	16172.0	Mm.4481	NM_008359	ENSMUSG00000002897	Il17ra	AW538159|Cdw217|Il17r|VDw217	interleukin 17 receptor A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-150904717-4	chr2	150904617	150904817	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024465)	promoter-TSS (NM_024465)	14.0	NM_024465	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76537887-3	chr15	76537793	76537993	+	790.899963	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013909, intron 2 of 8)	intron (NM_013909, intron 2 of 8)	853.0	NM_013909	30840.0	Mm.275279	NM_013909	ENSMUSG00000022559	Fbxl6	AU021795|Fbl6	F-box and leucine-rich repeat protein 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-104590321-4	chr2	104590232	104590432	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177253)	promoter-TSS (NM_177253)	-152.0	NM_177253	228410.0	Mm.259876	NM_145529	ENSMUSG00000027176	Cstf3	4732468G05Rik|C79532|CstF-77	cleavage stimulation factor, 3' pre-RNA, subunit 3	protein-coding	5.48695233216008	5.39584835224865	5.96876370929655	5.63915775229226	5.66884272505695	5.35901649205936	6.10357272760468	5.407239615282	0.0322113767522412	0.907719257640815	0.998431161219273
Merged-chr11-50377110-3	chr11	50377012	50377212	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021510)	promoter-TSS (NM_021510)	-607.0	NM_021510	59013.0	Mm.21740	NM_021510	ENSMUSG00000007850	Hnrnph1	AI642080|E430005G16Rik|Hnrnph|Hnrph1	heterogeneous nuclear ribonucleoprotein H1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127594694-4	chr10	127594603	127594803	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 8 of 88)	MIRc|SINE|MIR	26445.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-3179733-4	chr11	3179662	3179862	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030207, intron 4 of 32)	intron (NM_030207, intron 4 of 32)	13701.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-44399891-4	chr11	44399786	44399986	+	877.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001303244)	promoter-TSS (NM_001303244)	-177.0	NM_001303244	16160.0	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-59588905-2	chr10	59588805	59589005	+	887.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033259, intron 1 of 7)	intron (NM_001033259, intron 1 of 7)	27787.0	NM_001033259	215999.0	Mm.296470	NM_001033259	ENSMUSG00000009647	Mcu	2010012O16Rik|AV064928|C10orf42|Ccdc109a|D130073L02Rik|Gm64	mitochondrial calcium uniporter	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-67977657-4	chr15	67977568	67977768	+	995.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	281188.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117877567-2	chr10	117877467	117877667	+	925.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31593.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-38676882-4	chr6	38676778	38676978	+	937.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001101507, exon 3 of 5)	exon (NM_001101507, exon 3 of 5)	13809.0	NM_001101507	665180.0	Mm.349066	NM_001101507	ENSMUSG00000079598	Clec2l	AI414054|AW122724|Gm1064	C-type lectin domain family 2, member L	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-135160222-1	chr6	135160122	135160322	+	570.0	f0_balb.idr	intron (NM_013546, intron 1 of 3)	ID_B1|SINE|B4	7993.0	NM_013546	15199.0	Mm.378937	NM_013546	ENSMUSG00000042770	Hebp1	Hebp|p22HBP	heme binding protein 1	protein-coding	2.05562372261147	1.58594489931026	0.949307700305078	0.933884183548717	2.07472570967774	1.59853444297214	0.95365163475634	1.85094083287515	0.60973879466779	0.643908079122838	0.983220888090013
Merged-chr9-94669867-4	chr9	94669782	94669982	+	995.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177909)	promoter-TSS (NM_177909)	-10.0	NM_177909	331004.0	Mm.326125	NM_177909	ENSMUSG00000031129	Slc9a9	5730527A11Rik|9930105B05|AI854429|Nhe9	solute carrier family 9 (sodium/hydrogen exchanger), member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-61411104-2	chr11	61411004	61411204	+	737.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33029.0	NM_026183	67473.0	Mm.100741	NM_026183	ENSMUSG00000010122	Slc47a1	1300013J15Rik|AI036982|MATE1|mMATE1	solute carrier family 47, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-66854187-2	chr10	66854087	66854287	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	66197.0	NR_138560	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-88223294-1	chr1	88223194	88223394	+	560.0	f0_c57.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-3726.0	NM_001281466	100040766.0	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	Heatr7b1	maestro heat-like repeat family member 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117842585-2	chr11	117842485	117842685	+	847.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-6652.0	NM_001012273	11799.0	Mm.8552	NM_009689	ENSMUSG00000017716	Birc5	AAC-11|Api4|TIAP|survivin40	baculoviral IAP repeat-containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-94617514-6	chr16	94617436	94617636	+	999.805542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113389, intron 2 of 11)	intron (NM_001113389, intron 2 of 11)	6117.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-26864270-4	chr18	26864173	26864373	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-1110116.0	NM_001362334	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-25197467-3	chr12	25197378	25197578	+	647.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	68304.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	-2.05752322593321	-2.15521190974092	-2.16307242109104	-2.16952927915413	-2.17938029103484	-2.15350850414045	-2.16129297361887	-2.16837350464794	-0.683654500252594	0.846597994014493	1
Merged-chr1-52004262-2	chr1	52004162	52004362	+	665.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_001308266, intron 2 of 24)	intron (NM_001308266, intron 2 of 24)	-3978.0	NM_011487	20849.0	Mm.1550	NM_011487	ENSMUSG00000062939	Stat4	-	signal transducer and activator of transcription 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-54953706-2	chr15	54953606	54953806	+	1000.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_155354, exon 2 of 3)	non-coding (NR_155354, exon 2 of 3)	758.0	NR_155354	102638507.0	Mm.364574	NR_155354		Gm26684	-	predicted gene, 26684	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-102716040-3	chr3	102715932	102716132	+	794.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-18738.0	NM_027533	70747.0	Mm.27469	NM_027533	ENSMUSG00000027858	Tspan2	6330415F13Rik|B230119D02Rik|tspan-2	tetraspanin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-7393805-2	chr1	7393705	7393905	+	803.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	304885.0	NM_183028	319263.0	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-82898913-4	chr15	82898816	82899016	+	993.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027799)	promoter-TSS (NR_027799)	-164.0	NR_045068	100504637.0	Mm.440928	NR_045068	ENSMUSG00000100199	Gm20324	-	predicted gene, 20324	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-50675418-4	chr17	50675373	50675573	+	981.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013880, intron 5 of 5)	intron (NM_013880, intron 5 of 5)	-23208.0	NM_001297747	12228.0	Mm.392910	NM_009770	ENSMUSG00000022863	Btg3	ANA|tob5	B cell translocation gene 3	protein-coding	3.6438124024282	4.16582508571037	3.36406528057673	2.9697059927771	3.03744882090446	3.40896971529912	3.47761671618522	3.28652010724998	-0.465531997111801	0.40843936602576	0.892181486875301
Merged-chr11-102434603-4	chr11	102434503	102434703	+	988.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008175, intron 7 of 12)	intron (NM_008175, intron 7 of 12)	4281.0	NM_008175	14824.0	Mm.1568	NM_008175	ENSMUSG00000034708	Grn	Pgrn|epithelin	granulin	protein-coding	4.11632638636562	2.79953389531019	3.69325666940799	4.40008265225238	4.41030922037389	4.06494499284212	2.71706327856123	3.03920911652135	-0.193268252069785	0.747888055883489	0.998431161219273
Merged-chr10-40092664-2	chr10	40092564	40092764	+	581.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 1 of 5)	(CA)n|Simple_repeat|Simple_repeat	49590.0	NM_028247	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-29946145-4	chr16	29946019	29946219	+	886.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	33005.0	NR_037689	328657.0	Mm.425982	NM_001033403		Gm1968	-	predicted gene 1968	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30972790-4	chr7	30972719	30972919	+	789.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_038860)	promoter-TSS (NR_038860)	650.0	NM_001164185	54135.0	Mm.4067	NM_017405	ENSMUSG00000001247	Lsr	ILDR3|Lisch7	lipolysis stimulated lipoprotein receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-25663315-4	chr5	25663215	25663415	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42482.0	NM_020570	57434.0	Mm.143767	NM_020570	ENSMUSG00000028933	Xrcc2	4921524O04Rik|8030409M04Rik|RAD51|RecA	X-ray repair complementing defective repair in Chinese hamster cells 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105285055-2	chr8	105284955	105285155	+	589.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001166394, exon 3 of 7)	exon (NM_001166394, exon 3 of 7)	4473.0	NM_001166394	74356.0	Mm.204876	NM_028888	ENSMUSG00000014837	4931428F04Rik	AI426165|Kiaa0895l	RIKEN cDNA 4931428F04 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-33982473-3	chr7	33982385	33982585	+	849.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPEY4_LTR|LTR|ERVK	31457.0	NM_001276475	233099.0	Mm.110829	NM_001100464	ENSMUSG00000066584	Scgb2b27	Abpbg27|Abpbg5|Scgb2b5	secretoglobin, family 2B, member 27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-192094713-4	chr1	192094669	192094869	+	891.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2170.0	NM_011633	22033.0	Mm.380491	NM_011633		Traf5	-	TNF receptor-associated factor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59726018-4	chr15	59725914	59726114	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	68945.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-34262529-4	chr19	34262501	34262701	+	895.3250119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-7228.0	NM_007392	11475.0	Mm.213025	NM_007392	ENSMUSG00000035783	Acta2	0610041G09Rik|Actvs|SMAalpha|SMalphaA|a-SMA|alphaSMA	actin, alpha 2, smooth muscle, aorta	protein-coding	3.25892048769417	3.38159599025754	3.80930903833929	4.07611491422333	3.4281216187072	3.30216103016064	2.67251941022361	3.36985666598804	-0.692941994489261	0.216928449123977	0.707538695710375
Merged-chr1-195131624-4	chr1	195131494	195131694	+	994.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355061)	promoter-TSS (NM_001355061)	-24.0	NM_001355061	12946.0	Mm.301652	NM_013499	ENSMUSG00000016481	Cr1l	Crry|Mcp|mCRY	complement component (3b/4b) receptor 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-87664078-4	chr16	87663974	87664174	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34880.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	5.25580800984927	6.09016235942062	5.86372943588623	4.31565328703781	5.56792837056074	5.6032910812375	6.15528599227895	4.70682002041465	0.0802765161858088	0.833119303053082	0.998431161219273
Merged-chr16-49937938-2	chr16	49937838	49938038	+	739.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17892.0	NR_153658	100503490.0	Mm.72499	NR_153658		Gm19723	-	predicted gene, 19723	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-36214686-4	chr2	36214588	36214788	+	950.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-15738.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124446889-3	chr5	124446757	124446957	+	870.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001310727, exon 1 of 7)	5' UTR (NM_001310727, exon 1 of 7)	153.0	NM_001310727	67956.0	Mm.137966	NM_030241	ENSMUSG00000049327	Kmt5a	2410195B05Rik|AA617402|AW536475|PR-SET7|PR/SET07|Setd8	lysine methyltransferase 5A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-121427102-3	chr1	121427013	121427213	+	946.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3954.0	NM_001025156	70829.0	Mm.25788	NM_027567	ENSMUSG00000026339	Ccdc93	4633402D15Rik|9230102M16Rik	coiled-coil domain containing 93	protein-coding	3.04361051331292	2.82388716251488	3.21475686408964	2.76390918810752	3.20161889581851	1.96663001075962	2.6222758112424	3.35600310454049	-0.116541438512399	0.868137085916296	0.998431161219273
Merged-chr18-32390228-4	chr18	32390122	32390322	+	868.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360876, intron 1 of 17)	intron (NM_001360876, intron 1 of 17)	-11938.0	NR_045403	402767.0	Mm.385109	NR_045403	ENSMUSG00000097413	A830052D11Rik	-	RIKEN cDNA A830052D11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-9611428-3	chr13	9611320	9611520	+	777.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081426, intron 22 of 36)	intron (NM_001081426, intron 22 of 36)	152390.0	NM_001347471	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-114069873-2	chr7	114069773	114069973	+	696.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025846, intron 1 of 5)	intron (NM_025846, intron 1 of 5)	47908.0	NM_025846	66922.0	Mm.276572	NM_025846	ENSMUSG00000055723	Rras2	2610016H24Rik|C86394|TC21	related RAS viral (r-ras) oncogene 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129003941-3	chr4	129003840	129004040	+	877.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016895, intron 4 of 6)	intron (NM_016895, intron 4 of 6)	10716.0	NM_001033966	11637.0	Mm.29460	NM_016895	ENSMUSG00000028792	Ak2	Ak-2|D4Ertd220e	adenylate kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-106675684-4	chr9	106675610	106675810	+	708.724976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104459, intron 2 of 4)	intron (NR_104459, intron 2 of 4)	10106.0	NM_011573	21767.0	Mm.22266	NM_011573	ENSMUSG00000040813	Tex264	TEG-264	testis expressed gene 264	protein-coding	2.80488167352259	2.76709751912708	3.50828110473858	2.47549391567849	1.94741417456577	3.25947129611542	1.9288021458425	1.36918574133373	-1.15723834853076	0.18094339856703	0.653772002411329
Merged-chr3-83841686-4	chr3	83841592	83841792	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011905)	promoter-TSS (NM_011905)	-84.0	NM_011905	24088.0	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83020116-2	chr11	83020016	83020216	+	982.8000490000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_181545, intron 1 of 5)	intron (NM_181545, intron 1 of 5)	606.0	NM_001167743	276950.0	Mm.491599	NM_181545	ENSMUSG00000035208	Slfn8	-	schlafen 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-100619162-2	chr15	100619062	100619262	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011873, intron 3 of 3)	B1F1|SINE|Alu	3500.0	NM_011873	23994.0	Mm.486175	NM_011873	ENSMUSG00000000346	Dazap2	AI314727|Brbp|Gcap28|Prtb|gt6-12|mKIAA0058	DAZ associated protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-6427182-1	chr15	6427082	6427282	+	566.0	f1_balb.idr	intron (NM_001008702, intron 9 of 13)	intron (NM_001008702, intron 9 of 13)	-18151.0	NM_013485	12279.0	Mm.29095	NM_013485	ENSMUSG00000022149	C9	-	complement component 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-42471398-4	chr9	42471296	42471496	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173038, intron 1 of 7)	intron (NM_173038, intron 1 of 7)	862.0	NM_173038	272589.0	Mm.34483	NM_173038	ENSMUSG00000037287	Tbcel	D330014K23|E130107N23Rik|Lrrc35	tubulin folding cofactor E-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152753890-2	chr1	152753790	152753990	+	566.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081197, intron 1 of 1)	intron (NM_001081197, intron 1 of 1)	3339.0	NM_001081197	71281.0	Mm.158650	NM_001081197	ENSMUSG00000055547	Apobec4	4933431M11Rik	apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 4 (putative)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-162532165-1	chr1	162532065	162532265	+	745.0	f1_balb.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	16180.0	NM_144877	71449.0	Mm.270569	NM_144877	ENSMUSG00000026694	Mettl13	5630401D24Rik	methyltransferase like 13	protein-coding	-1.26550836321643	-1.23538490674683	-1.24673049817958	-1.25605010478787	-1.26497736998827	-0.580802564315158	-1.24416210496749	-1.25438189966081	2.74054745292391	0.426663645876262	1
Merged-chr9-122351686-4	chr9	122351606	122351806	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026179)	promoter-TSS (NM_026179)	90.0	NM_026179	67469.0	Mm.280254	NM_026179	ENSMUSG00000032540	Abhd5	1300003D03Rik|2010002J10Rik|CDS|CGI-58|IECN5|NCIE2	abhydrolase domain containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-146682657-3	chr3	146682565	146682765	+	634.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31348.0	NM_029144	75015.0	Mm.250432	NM_029144	ENSMUSG00000048652	4930503B20Rik	1700013A07Rik|1700095G21Rik|4930483N21Rik|Gm1652|Samd13	RIKEN cDNA 4930503B20 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141625627-5	chr4	141625757	141625957	+	739.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001033150, exon 20 of 20)	3' UTR (NM_001033150, exon 20 of 20)	-2023.0	NM_001013780	384071.0	Mm.295682	NM_001013780	ENSMUSG00000040740	Slc25a34	Gm1369	solute carrier family 25, member 34	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98788118-2	chr11	98788018	98788218	+	930.8333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-7398.0	NM_001361931	74026.0	Mm.258352	NM_028722	ENSMUSG00000052915	Msl1	2810017F12Rik|4121402D02Rik|4930463F05Rik|AA682082|Msl-1	male specific lethal 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70509855-2	chr11	70509755	70509955	+	626.666626	f1_balb.idr|f1_c57bl6.idr	exon (NM_029360, exon 2 of 5)	exon (NM_029360, exon 2 of 5)	4581.0	NM_029360	75604.0	Mm.24400	NM_029360	ENSMUSG00000018919	Tm4sf5	2010003F10Rik|AI323987	transmembrane 4 superfamily member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-84843800-3	chr3	84843699	84843899	+	692.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177773, intron 1 of 13)	intron (NM_001177773, intron 1 of 13)	-20346.0	NM_001177774	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131910404-4	chr1	131910308	131910508	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175294)	promoter-TSS (NM_175294)	-50.0	NM_001145804	98415.0	Mm.246869	NM_175294	ENSMUSG00000026434	Nucks1	2700010L10Rik|8430423A01Rik|AI647518|C78391|Nucks	nuclear casein kinase and cyclin-dependent kinase substrate 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-66459494-2	chr18	66459394	66459594	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021451, intron 1 of 2)	intron (NM_021451, intron 1 of 2)	890.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-110840674-4	chr5	110840545	110840745	+	877.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153571)	promoter-TSS (NM_153571)	628.0	NM_016681	50883.0	Mm.279308	NM_016681	ENSMUSG00000029521	Chek2	CHK2|Cds1|HUCDS1|Rad53	checkpoint kinase 2	protein-coding	-0.0331106072200993	0.306893940648142	0.00753489074837225	-0.159425994351696	-0.0293191815727328	-0.151233537111213	0.275723849461665	-0.158875908451786	-0.392235705243177	0.853204843229015	1
Merged-chr13-34002297-4	chr13	34002212	34002412	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009068)	promoter-TSS (NM_009068)	-51.0	NM_001359997	19766.0	Mm.374799	NM_009068	ENSMUSG00000021408	Ripk1	D330015H01Rik|RIP|RIP-1|Rinp|Rip1	receptor (TNFRSF)-interacting serine-threonine kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34164568-1	chr17	34164468	34164668	+	634.0	f1_balb.idr	Intergenic	B4A|SINE|B4	11377.0	NM_010387	14999.0	Mm.460938	NM_010387	ENSMUSG00000079547	H2-DMb1	AI385589|H-2Mb1|H2-Mb1	histocompatibility 2, class II, locus Mb1	protein-coding	2.08186295940425	2.33366173040578	2.4776486738233	2.30550542311075	1.8444687584873	2.68350140964455	1.36306485562932	2.51426039112189	-0.21187878278047	0.817069730376389	0.998431161219273
Merged-chr7-101380382-2	chr7	101380282	101380482	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001040112, intron 1 of 30)	B3|SINE|B2	2260.0	NM_001040112	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132793264-2	chr4	132793164	132793364	+	830.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033308, intron 1 of 5)	ID_B1|SINE|B4	3100.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-84647781-4	chr3	84647672	84647872	+	952.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18420.0	NM_177260	320782.0	Mm.107370	NM_177260	ENSMUSG00000056498	Tmem154	9930117H01Rik	transmembrane protein 154	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-101965200-1	chr5	101965100	101965300	+	540.0	f1_balb.idr	intron (NM_172882, intron 5 of 66)	B3A|SINE|B2	104721.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	-0.404984061106094	-0.390794805838801	-0.395429718695946	-0.399014720064079	0.493063841012626	-0.18179203834192	-0.203433527859347	-0.398387852002809	3.74353510660642	0.122361995642286	1
Merged-chr16-43587272-2	chr16	43587172	43587372	+	582.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_181058, intron 5 of 6)	intron (NM_181058, intron 5 of 6)	-53383.0	NR_030576	100124467.0		NR_030576	ENSMUSG00000076372	Mir568	Mirn568|mmu-mir-568	microRNA 568	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-118504048-2	chr14	118503948	118504148	+	584.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163676, intron 26 of 29)	intron (NM_001163676, intron 26 of 29)	88424.0	NR_105815	102465208.0		NR_105815	ENSMUSG00000098433	Mir6391	Gm27914|mmu-mir-6391	microRNA 6391	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-62427355-2	chr10	62427255	62427455	+	618.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4898.0	NM_145419	216019.0	Mm.213213	NM_145419	ENSMUSG00000020080	Hkdc1	BC016235	hexokinase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-194672028-4	chr1	194671940	194672140	+	979.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008882, intron 3 of 31)	intron (NM_008882, intron 3 of 31)	52211.0	NM_008882	18845.0	Mm.2251	NM_008882	ENSMUSG00000026640	Plxna2	2810428A13Rik|AA589422|AW457381|OCT|PlexA2|Plxn2|mKIAA0463	plexin A2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-32458949-4	chr5	32458844	32459044	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172707)	promoter-TSS (NM_172707)	-26.0	NM_172707	19046.0	Mm.241931	NM_172707	ENSMUSG00000014956	Ppp1cb	1200010B19	protein phosphatase 1, catalytic subunit, beta isoform	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-96421445-2	chr7	96421345	96421545	+	552.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011858, intron 2 of 32)	intron (NM_011858, intron 2 of 32)	-79481.0	NR_046043	670727.0	Mm.421352	NR_046043	ENSMUSG00000085751	Gm15412	-	predicted gene 15412	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-142699807-3	chr3	142699750	142699950	+	727.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1198.0	NM_173763	229905.0	Mm.289643	NM_173763	ENSMUSG00000040213	Kyat3	Ccbl2|KATIII|Kat3	kynurenine aminotransferase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-66962737-3	chr6	66962642	66962842	+	940.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177560, intron 3 of 4)	intron (NM_001177560, intron 3 of 4)	65851.0	NM_001177558	14701.0	Mm.234342	NM_025278	ENSMUSG00000036402	Gng12	2010305F15Rik|AA536815|AI115529|AI314170|AI842738	guanine nucleotide binding protein (G protein), gamma 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-110100844-2	chr5	110100744	110100944	+	775.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001281812, intron 1 of 6)	intron (NM_001281812, intron 1 of 6)	285.0	NM_001281812	403178.0	Mm.297057	NM_207279	ENSMUSG00000064247	Plcxd1	A330045H12Rik|Gm576	phosphatidylinositol-specific phospholipase C, X domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-87022927-2	chr10	87022827	87023027	+	655.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14985.0	NM_138673	192188.0	Mm.279611	NM_138673	ENSMUSG00000035459	Stab2	FEEL-2|FELL|MFEEL-2|STAB-2	stabilin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-108827763-4	chr6	108827657	108827857	+	990.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138677)	promoter-TSS (NM_138677)	-884.0	NM_138677	192193.0	Mm.21596	NM_138677	ENSMUSG00000030104	Edem1	A130059K23Rik|EDEM|mKIAA0212	ER degradation enhancer, mannosidase alpha-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-53020273-4	chr19	53020201	53020401	+	953.43335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133216, intron 3 of 20)	intron (NM_133216, intron 3 of 20)	-9545.0	NR_105834	102465220.0		NR_105834	ENSMUSG00000098730	Mir6407	Gm27832|mmu-mir-6407	microRNA 6407	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-7838256-4	chr9	7838170	7838370	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1213.0	NM_007465	11797.0	Mm.335659	NM_007465	ENSMUSG00000057367	Birc2	AW146227|Api1|Api2|Birc3|C-IAP1|C330006D17Rik|HIAP1|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF48|cIAP1|cIAP2|mcIAP1	baculoviral IAP repeat-containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-24450691-1	chr8	24450591	24450791	+	542.0	f1_c57bl6.idr	Intergenic	Intergenic	-11745.0	NM_026931	69068.0	Mm.25775	NM_026931	ENSMUSG00000056313	Tcim	1110065B09Rik|1810011O10Rik|AW121743|AW321058	transcriptional and immune response regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-84680185-2	chr18	84680094	84680294	+	948.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023149, intron 3 of 11)	B2_Mm2|SINE|B2	1865.0	NM_001289531	66054.0	Mm.29646	NM_023149	ENSMUSG00000024644	Cndp2	0610010E05Rik|C76600|Cn2|Dip-2|Pep-1|Pep1	CNDP dipeptidase 2 (metallopeptidase M20 family)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-144933857-2	chr3	144933757	144933957	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1328.0	NM_001033199	99709.0	Mm.440040	NM_001033199	ENSMUSG00000074195	Clca4b	AI747448|Clca7	chloride channel accessory 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-47772939-4	chr9	47772761	47772961	+	872.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	45347.0	NR_046048	100038460.0	Mm.447649	NR_046048		Gm10677	-	predicted gene 10677	ncRNA	0.345362569839082	-0.0195827885442452	-0.0251444051497816	0.697536515629485	-0.0355235920869655	0.489719685123069	-0.0239170088337635	-0.0286903511904134	-1.20523462215956	0.594022827565658	1
Merged-chr5-112243375-2	chr5	112243275	112243475	+	610.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9143.0	NM_001312884	12959.0	Mm.40324	NM_021351	ENSMUSG00000066975	Cryba4	-	crystallin, beta A4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-4944907-2	chr1	4944807	4945007	+	682.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177795, intron 2 of 5)	intron (NM_001177795, intron 2 of 5)	73827.0	NM_001290372	58175.0	Mm.103771	NM_021374	ENSMUSG00000002459	Rgs20	2900073E09Rik|Rgsz1	regulator of G-protein signaling 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-24619753-2	chr16	24619653	24619853	+	761.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 5 of 12)	intron (NM_178665, intron 5 of 12)	90439.0	NR_038091	624582.0	Mm.439775	NR_038091		Morf4l1-ps1	A730098P11Rik	mortality factor 4 like 1, pseudogene 1	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35591024-3	chr17	35590964	35591164	+	857.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23579.0	NM_175148	69542.0	Mm.265291	NM_175148	ENSMUSG00000039269	2300002M23Rik	Stg|emprin	RIKEN cDNA 2300002M23 gene	protein-coding	2.92288011250342	2.91510419288761	2.94692232481988	3.79790761536742	3.85431628111829	4.17496221672035	4.10068122454357	3.10708478524592	0.991696876884297	0.0796088793953489	0.42921539918457
Merged-chr19-55766137-3	chr19	55766037	55766237	+	707.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001331146, intron 4 of 14)	intron (NM_001331146, intron 4 of 14)	24327.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115516261-4	chr5	115516168	115516368	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011223, intron 1 of 10)	intron (NM_011223, intron 1 of 10)	9592.0	NM_133915	19303.0	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	6.872095806383	6.92796241175181	6.60548300286101	6.92130568875417	7.34301013542098	7.65386179527421	6.79365917414119	7.29178982974427	0.487679864078205	0.0111740372896388	0.117670654828338
Merged-chr6-114859551-2	chr6	114859451	114859651	+	939.25	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028835, exon 19 of 19)	3' UTR (NM_028835, exon 19 of 19)	62270.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-94165024-3	chr2	94164939	94165139	+	947.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7130.0	NM_019657	56348.0	Mm.22505	NM_019657	ENSMUSG00000027195	Hsd17b12	2610510O05Rik|AI172963|KIK-I|Kik1	hydroxysteroid (17-beta) dehydrogenase 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117252864-4	chr8	117252750	117252950	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4169.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-74455294-2	chr17	74455194	74455394	+	716.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033367, intron 1 of 8)	B3|SINE|B2	3814.0	NM_001033367	268973.0	Mm.311884	NM_001033367	ENSMUSG00000039193	Nlrc4	9530011P19Rik|CLAN|CLAN1|CLANA|CLANB|CLANC|CLAND|Card12|IPAF	NLR family, CARD domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41979719-2	chr19	41979619	41979819	+	734.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028152, intron 1 of 30)	PB1D7|SINE|Alu	1417.0	NM_028152	72199.0	Mm.218940	NM_028152	ENSMUSG00000025159	Mms19	2410001K24Rik|2610042O15Rik|AI316855|C79368|C86341|Mms19l	MMS19 (MET18 S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-102748821-4	chr14	102748719	102748919	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	233813.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-60502424-6	chr3	60502286	60502486	+	913.694458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253711, intron 1 of 7)	intron (NM_001253711, intron 1 of 7)	1207.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141077322-2	chr4	141077222	141077422	+	857.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_149724, intron 1 of 8)	B4A|SINE|B4	1035.0	NR_149724	66147.0	Mm.21187	NM_025383	ENSMUSG00000028923	Necap2	1110005F07Rik|AA409105|C78898|NECAP-2	NECAP endocytosis associated 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-107241672-2	chr4	107241572	107241772	+	770.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029985, intron 3 of 7)	B2_Mm2|SINE|B2	11861.0	NM_029985	77809.0	Mm.29681	NM_029985	ENSMUSG00000028617	Lrrc42	A930011F22Rik|AA536996	leucine rich repeat containing 42	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-184729961-4	chr1	184729858	184730058	+	884.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008250, exon 3 of 4)	exon (NM_008250, exon 3 of 4)	2535.0	NM_008250	15284.0	Mm.1347	NM_008250	ENSMUSG00000039377	Hlx	Hlx1	H2.0-like homeobox	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-58225890-4	chr11	58225796	58225996	+	846.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10919.0	NM_019440	54396.0	Mm.458517	NM_019440	ENSMUSG00000069874	Irgm2	AI481100|GTPI|Ifggd2|Iigp2	immunity-related GTPase family M member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-4145991-4	chr7	4145874	4146074	+	833.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172736, exon 15 of 15)	3' UTR (NM_172736, exon 15 of 15)	3898.0	NM_175529	243813.0	Mm.347643	NM_175529	ENSMUSG00000043432	Leng9	9530024C23Rik|F630035L11Rik	leukocyte receptor cluster (LRC) member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125069551-3	chr6	125069451	125069651	+	839.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163269, intron 1 of 1)	intron (NM_001163269, intron 1 of 1)	1631.0	NM_001163269	381810.0	Mm.333386	NM_001163268	ENSMUSG00000067714	Lpar5	GPR93|Gm1072|Gpr92|LPA5	lysophosphatidic acid receptor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-84350379-4	chr15	84350207	84350407	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24188.0	NM_001162500	64099.0	Mm.251356	NM_022321	ENSMUSG00000022439	Parvg	AI413459	parvin, gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-9335436-4	chr11	9335351	9335551	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178259, intron 27 of 61)	intron (NM_178259, intron 27 of 61)	143509.0	NM_178259	268379.0	Mm.39270	NM_178259	ENSMUSG00000004668	Abca13	9830132L24|A930002G16Rik|AI956815	ATP-binding cassette, sub-family A (ABC1), member 13	protein-coding	3.68164178782477	4.04374334537724	2.67220979913728	3.75050635237943	3.39363034429534	2.95409483743088	3.42454299156699	4.23393615496758	-0.0462949944336671	0.93638342736443	0.998431161219273
Merged-chr2-30606200-2	chr2	30606100	30606300	+	610.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030137, intron 1 of 1)	intron (NM_030137, intron 1 of 1)	11156.0	NM_030137	78617.0	Mm.40413	NM_030137	ENSMUSG00000047363	Cstad	9530039B02Rik	CSA-conditional, T cell activation-dependent protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124629652-2	chr5	124629552	124629752	+	864.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011596, intron 1 of 19)	intron (NM_011596, intron 1 of 19)	600.0	NM_011596	21871.0	Mm.1158	NM_011596	ENSMUSG00000038023	Atp6v0a2	8430408C20Rik|AI385560|ATP6a2|AW489264|Atp6n1d|Atp6n2|C76904|ISF|J6B7|SHIF|Stv1|TJ6M|TJ6s|Tj6|V-ATPase 116 kDa|V-ATPase a2	ATPase, H+ transporting, lysosomal V0 subunit A2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-108827635-3	chr9	108827536	108827736	+	807.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001359573, exon 1 of 36)	exon (NM_001359573, exon 1 of 36)	1591.0	NM_001359572	107934.0	Mm.39945	NM_080437	ENSMUSG00000023473	Celsr3	Adgrc3|Fmi1|flamingo|mKIAA0812	cadherin, EGF LAG seven-pass G-type receptor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-85323395-1	chr1	85323295	85323495	+	843.7999880000001	f1_balb.idr	Intergenic	IAPEY4_LTR|LTR|ERVK	-52829.0	NM_001037909	620078.0	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik	RIKEN cDNA C130026I21 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-79075132-4	chr15	79075060	79075260	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145139)	promoter-TSS (NM_145139)	-63.0	NM_145139	223691.0	Mm.206404	NM_145139	ENSMUSG00000033047	Eif3l	0610011H21Rik|D15N1e|Eif3eip|Eif3ip|Eif3s6ip|HSP-66Y|PAF67	eukaryotic translation initiation factor 3, subunit L	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-76373771-4	chr16	76373670	76373870	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173440)	promoter-TSS (NM_173440)	57.0	NM_001358238	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129587548-2	chr2	129587448	129587648	+	845.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5291.0	NM_001291020	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-34442252-4	chr19	34442132	34442332	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32903.0	NM_009890	12642.0	Mm.30824	NM_009890	ENSMUSG00000050370	Ch25h	AI462618|m25OH	cholesterol 25-hydroxylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111448659-2	chr12	111448559	111448759	+	599.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_009396, intron 6 of 11)	intron (NM_009396, intron 6 of 11)	5998.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5183440-2	chr17	5183340	5183540	+	834.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 4 of 19)	intron (NM_001085355, intron 4 of 19)	188366.0	NM_001085355	239985.0	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-184807839-4	chr1	184807736	184807936	+	897.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290273, intron 1 of 6)	B3A|SINE|B2	3464.0	NM_001290273	66112.0	Mm.272457	NM_001081361	ENSMUSG00000026621	Marc1	1300013F15Rik|Mosc1	mitochondrial amidoxime reducing component 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-85750905-2	chr1	85750805	85751005	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1043.0	NR_106172	102466882.0		NR_106172	ENSMUSG00000098634	Mir8096	Gm27479|mmu-mir-8096	microRNA 8096	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-144825363-4	chr3	144825261	144825461	+	868.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_139148, exon 13 of 14)	exon (NM_139148, exon 13 of 14)	-5867.0	NM_030601	80797.0	Mm.20897	NM_030601	ENSMUSG00000028262	Clca3a2	Clca2	chloride channel accessory 3A2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-86414510-2	chr1	86414410	86414610	+	821.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11819.0	NM_027966	71863.0	Mm.179627	NM_027966	ENSMUSG00000036574	Tex44	1700019O17Rik	testis expressed 44	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69849403-4	chr11	69849323	69849523	+	902.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168497, intron 6 of 7)	intron (NM_001168497, intron 6 of 7)	2779.0	NR_033133	70310.0	Mm.28874	NM_023564	ENSMUSG00000019461	Plscr3	2210403O21Rik|2610037N06Rik|ESTM3|X83310	phospholipid scramblase 3	protein-coding	0.500405974642571	0.253954796636931	0.247529066155668	0.242566557107097	0.885786705034612	0.255402385661034	0.710024988463481	0.780509497273269	2.71440568591282	0.171293284292591	1
Merged-chr1-135369054-1	chr1	135368954	135369154	+	561.0	f0_balb.idr	TTS (NM_053106)	TTS (NM_053106)	6009.0	NM_175259	77552.0	Mm.41407	NM_175259	ENSMUSG00000041889	Shisa4	9330132O05Rik|Tmem58|mShisa4	shisa family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-111789630-7	chr13	111789523	111789723	+	935.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011945, intron 1 of 19)	intron (NM_011945, intron 1 of 19)	19370.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-95261295-3	chr10	95261198	95261398	+	753.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001330138, intron 2 of 2)	(CAAAA)n|Simple_repeat|Simple_repeat	62411.0	NM_001330138	12905.0	Mm.473739	NM_009950	ENSMUSG00000045867	Cradd	RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35187484-1	chr17	35187384	35187584	+	630.0	f1_c57bl6.idr	intron (NM_010734, intron 1 of 3)	ID_B1|SINE|B4	956.0	NM_010734	16988.0	Mm.19379	NM_010734	ENSMUSG00000073412	Lst1	B144	leukocyte specific transcript 1	protein-coding	0.2686352761155	0.290543912420377	0.283396550174532	0.592140866181192	0.666325784985339	0.292151299379237	0.879702102660283	1.02463362458794	2.66214767256278	0.170359440951029	1
Merged-chr2-12418931-4	chr2	12418838	12419038	+	849.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355537, intron 1 of 13)	CpG	522.0	NM_001355537	66960.0	Mm.34059	NM_024185	ENSMUSG00000026767	Mindy3	1810041E18Rik|2310047O13Rik|5830410F13Rik|AI447827|AW111958|Fam188a	MINDY lysine 48 deubiquitinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-73476413-3	chr13	73476324	73476524	+	897.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145376, intron 1 of 13)	intron (NM_145376, intron 1 of 13)	9041.0	NM_145376	210992.0	Mm.284649	NM_145376	ENSMUSG00000021608	Lpcat1	2900035H07Rik|Aytl2|BB137372|BC005662|C87117|LPCAT|rd11	lysophosphatidylcholine acyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-55976484-1	chr16	55976384	55976584	+	541.0	f1_c57bl6.idr	intron (NM_173026, intron 1 of 10)	intron (NM_173026, intron 1 of 10)	-1867.0	NR_027965	66391.0	Mm.472722	NM_133677	ENSMUSG00000102101	Zbtb11os1	2310061J03Rik	zinc finger and BTB domain containing 11, opposite strand 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-51991728-3	chr2	51991660	51991860	+	784.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18552.0	NM_001141948	64685.0	Mm.7491	NM_019401	ENSMUSG00000026946	Nmi	-	N-myc (and STAT) interactor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-123801761-3	chr9	123801663	123801863	+	796.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110253, intron 14 of 17)	intron (NM_001110253, intron 14 of 17)	-4714.0	NM_030712	80901.0	Mm.124289	NM_030712	ENSMUSG00000048521	Cxcr6	BB217514|BONZO|STRL33	chemokine (C-X-C motif) receptor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-58366567-3	chr13	58366470	58366670	+	657.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11623.0	NM_175214	75050.0	Mm.385742	NM_175214	ENSMUSG00000060176	Kif27	4930517I18Rik	kinesin family member 27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88505847-2	chr3	88505747	88505947	+	569.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2495.0	NM_001002011	16905.0	Mm.243014	NM_019390	ENSMUSG00000028063	Lmna	Dhe	lamin A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-64882809-4	chr14	64882733	64882933	+	848.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177338, intron 4 of 9)	intron (NM_177338, intron 4 of 9)	67024.0	NM_177338	219150.0	Mm.344074	NM_177338	ENSMUSG00000021972	Hmbox1	AI451877|AI604847|F830020C16Rik	homeobox containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-69214410-2	chr10	69214310	69214510	+	672.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252638, intron 1 of 11)	intron (NM_001252638, intron 1 of 11)	1216.0	NM_001252638	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-101506916-1	chr13	101506816	101507016	+	652.0	f1_balb.idr	Intergenic	Intergenic	-109336.0	NR_046187	78136.0	Mm.399065	NR_046187		4922502H24Rik	-	RIKEN cDNA 4922502H24 gene	ncRNA	2.49055594916181	2.55645612276583	2.92494243547335	2.07745165351226	3.32594846567397	1.48690675947997	3.84364396193713	2.08925658320983	0.847092603898893	0.320951338081076	0.823346905075712
Merged-chr7-127841639-4	chr7	127841553	127841753	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009294)	promoter-TSS (NM_009294)	-155.0	NM_009294	20909.0	Mm.24867	NM_009294	ENSMUSG00000030805	Stx4a	Stx4|Syn-4|Syn4	syntaxin 4A (placental)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99920475-2	chr7	99920375	99920575	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_175388, exon 6 of 6)	3' UTR (NM_175388, exon 6 of 6)	59983.0	NM_175388	108937.0	Mm.323087	NM_175388	ENSMUSG00000058761	Rnf169	2900057K09Rik	ring finger protein 169	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122218016-2	chr5	122217916	122218116	+	934.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359454, intron 3 of 7)	intron (NM_001359454, intron 3 of 7)	7729.0	NM_028752	74096.0	Mm.28804	NM_028752	ENSMUSG00000064267	Hvcn1	0610039P13Rik|AI450555|BTS|HV1|Vsop.|mVSOP	hydrogen voltage-gated channel 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133217762-2	chr4	133217662	133217862	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3047.0	NM_027152	69655.0	Mm.285685	NM_027152	ENSMUSG00000028865	Cd164l2	2310047N01Rik	CD164 sialomucin-like 2	protein-coding	-0.239169314408865	-0.225547485168142	-0.230016915631903	0.385964553969594	0.322813261443031	-0.22453908789212	-0.229031720127105	-0.0688661021882294	0.106312837229484	0.965030777778423	1
Merged-chr15-25692519-3	chr15	25692433	25692633	+	616.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019472, intron 2 of 40)	PB1D10|SINE|Alu	-60673.0	NM_001353142	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-50110774-2	chr18	50110682	50110882	+	619.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17419.0	NM_008292	15488.0	Mm.277857	NM_008292	ENSMUSG00000024507	Hsd17b4	17-beta-HSD|17[b]-HSD|DBP|MFE-2|MFP2|MPF-2|Mfp-2|perMFE-2	hydroxysteroid (17-beta) dehydrogenase 4	protein-coding	2.15591445114962	1.75456822778236	1.53233618474567	1.0879611213948	1.57777103235285	2.36785789157022	1.34881646521926	2.11949695610008	0.62071318745898	0.573251912942315	0.964496317550327
Merged-chr11-80384457-2	chr11	80384357	80384557	+	550.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045038, intron 1 of 16)	B4|SINE|B4	1178.0	NM_001130171	22680.0	Mm.401332	NM_011751	ENSMUSG00000017421	Zfp207	8430401D15Rik|BuGZ|Zep|Znf207	zinc finger protein 207	protein-coding	-1.7024385483431	-1.81249224917775	-1.82134771053534	-1.82862185015837	-1.70038292649591	-1.81057323376012	-1.81934302819017	-1.82731978264371	0.0376840119903864	0.991491645451152	1
Merged-chr7-123123981-4	chr7	123123858	123124058	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144925)	promoter-TSS (NM_144925)	73.0	NM_144925	233833.0	Mm.102305	NM_144925	ENSMUSG00000052707	Tnrc6a	2010321I05Rik|3110054G10Rik|AW557223|CAGH26|D130023A07Rik|GW182|Tnrc6	trinucleotide repeat containing 6a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-29837664-4	chr17	29837608	29837808	+	967.216675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081160, intron 13 of 15)	intron (NM_001081160, intron 13 of 15)	50174.0	NM_001081160	74762.0	Mm.40901	NM_001081160	ENSMUSG00000043557	Mdga1	1200011I03Rik|GPIM|Mamdc3	MAM domain containing glycosylphosphatidylinositol anchor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-110727041-2	chr8	110726941	110727141	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198625, intron 3 of 13)	intron (NM_198625, intron 3 of 13)	1315.0	NM_001310591	244654.0	Mm.490385	NM_198625	ENSMUSG00000033763	Mtss1l	ABBA	metastasis suppressor 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-101616415-2	chr14	101616315	101616515	+	594.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7224.0	NM_001081278	210789.0	Mm.320639	NM_173380	ENSMUSG00000033083	Tbc1d4	5930406J04Rik|A930035N22|AV295684|As160	TBC1 domain family, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106789205-4	chr11	106789093	106789293	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177088)	promoter-TSS (NM_177088)	-8.0	NM_001355677	13207.0	Mm.491096	NM_007840	ENSMUSG00000020719	Ddx5	2600009A06Rik|G17P1|HUMP68|Hlr1|p68	DEAD (Asp-Glu-Ala-Asp) box polypeptide 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129195758-2	chr2	129195658	129195858	+	607.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-3015.0	NM_015747	20515.0	Mm.272675	NM_015747	ENSMUSG00000027397	Slc20a1	AI607883|Glvr-1|Glvr1	solute carrier family 20, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67127198-4	chr10	67127084	67127284	+	928.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207221)	promoter-TSS (NM_207221)	-74.0	NM_207221	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75530550-4	chr11	75530457	75530657	+	951.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1137.0	NM_001199284	215113.0	Mm.11186	NM_173388	ENSMUSG00000038178	Slc43a2	7630402D21Rik|BC042513|Lat4	solute carrier family 43, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-79207887-4	chr11	79207776	79207976	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35148.0	NM_001042565	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70670034-6	chr11	70669909	70670109	+	892.888916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172561)	promoter-TSS (NM_172561)	-593.0	NM_001167669	216873.0	Mm.432524	NM_172561	ENSMUSG00000018287	Spag7	5730443G10|ACRP|FSA-1|Fsa1l	sperm associated antigen 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-164007101-4	chr2	164007007	164007207	+	964.93335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018753, intron 1 of 5)	RLTR26B_MM|LTR|ERVK	11910.0	NM_018753	54401.0	Mm.34319	NM_018753	ENSMUSG00000018326	Ywhab	1300003C17Rik|14-3-3b	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-88099716-4	chr8	88099669	88099869	+	825.383301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151771, intron 2 of 7)	intron (NR_151771, intron 2 of 7)	18838.0	NR_151771	100040328.0	Mm.56398	NR_151771		Gm2716	4933416k23	predicted gene 2716	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-117544805-3	chr4	117544713	117544913	+	883.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5511.0	NM_001356404	140546.0	Mm.235891	NM_080469	ENSMUSG00000033423	Eri3	PINT1|Prnpip1	exoribonuclease 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-37370060-2	chr19	37369960	37370160	+	675.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-6343.0	NM_010615	16551.0	Mm.42203	NM_010615	ENSMUSG00000012443	Kif11	Eg5|Kif8|Kifl1|Knsl1	kinesin family member 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91069388-2	chr2	91069288	91069488	+	942.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290765, intron 1 of 9)	MIRb|SINE|MIR	927.0	NM_026721	68427.0	Mm.192375	NM_026721	ENSMUSG00000002105	Slc39a13	1100001L14Rik|AA387663|ZIP-13|ZIP13	solute carrier family 39 (metal ion transporter), member 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-138605239-2	chr3	138605137	138605337	+	545.5	f0_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	77969.0	NM_001313980	13684.0	Mm.3941	NM_007917	ENSMUSG00000028156	Eif4e	EG668879|Eif4e-ps|If4e|eIF-4E	eukaryotic translation initiation factor 4E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-120167673-4	chr10	120167561	120167761	+	850.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359184, intron 6 of 11)	RLTR28|LTR|ERVL	33936.0	NM_028679	73914.0	Mm.146194	NM_028679	ENSMUSG00000020227	Irak3	4833428C18Rik|AI563835|IRAK-M	interleukin-1 receptor-associated kinase 3	protein-coding	0.0335915418825907	-0.302038376498928	-0.305745270545522	0.0864110346781986	0.133876237946591	-0.30119988428038	-0.30492949657385	-0.308094647397754	-0.649372417118593	0.795686555427685	1
Merged-chr2-18916701-2	chr2	18916601	18916801	+	589.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008845, intron 1 of 9)	intron (NM_008845, intron 1 of 9)	81420.0	NM_008845	18718.0	Mm.313977	NM_008845	ENSMUSG00000026737	Pip4k2a	AW742916|Pip5k2a	phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139332761-2	chr5	139332661	139332861	+	801.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7297.0	NM_172723	231821.0	Mm.297819	NM_172723	ENSMUSG00000056413	Adap1	4930431P11Rik|Centa1|GC1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-16365049-4	chr14	16364920	16365120	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009409)	promoter-TSS (NM_009409)	-186.0	NM_009409	21974.0	Mm.130362	NM_009409	ENSMUSG00000017485	Top2b	D230016L12Rik|Top-2	topoisomerase (DNA) II beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111538733-4	chr12	111538637	111538837	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178041, intron 2 of 11)	CpG-3539	636.0	NM_173363	217869.0	Mm.271222	NM_173363	ENSMUSG00000021282	Eif5	2810011H21Rik|D12Ertd549e	eukaryotic translation initiation factor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-178078136-2	chr2	178078036	178078236	+	887.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162922, intron 1 of 3)	RMER17B|LTR|ERVK	289.0	NM_001162922	353208.0	Mm.381194	NM_001162922	ENSMUSG00000078861	Zfp931	2810021G02Rik	zinc finger protein 931	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-86862451-7	chr8	86862359	86862559	+	964.371399	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030563, intron 1 of 6)	intron (NM_030563, intron 1 of 6)	22799.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98710649-4	chr11	98710550	98710750	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361995, intron 16 of 25)	intron (NM_001361995, intron 16 of 25)	9337.0	NM_009971	12985.0	Mm.1238	NM_009971	ENSMUSG00000038067	Csf3	Csfg|G-CSF|MGI-IG	colony stimulating factor 3 (granulocyte)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-56301464-4	chr8	56301342	56301542	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008278, intron 3 of 6)	intron (NM_008278, intron 3 of 6)	6890.0	NM_008278	15446.0	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	3.22429918737859	3.24153900201756	1.68814257802449	3.55158492540835	3.89853944586933	4.37640097667718	3.4449387005305	3.15398953675378	1.07386315749853	0.0978198379141267	0.486315917939375
Merged-chr5-43233000-4	chr5	43232893	43233093	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175937)	promoter-TSS (NM_175937)	-470.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-75177585-2	chr14	75177485	75177685	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008879, intron 2 of 16)	intron (NM_008879, intron 2 of 16)	41160.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-86809233-2	chr8	86809133	86809333	+	557.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63227.0	NM_009172	20437.0	Mm.324553	NM_009172	ENSMUSG00000036840	Siah1a	AA982064|AI853500|Sinh1a	siah E3 ubiquitin protein ligase 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-87334860-4	chr3	87334775	87334975	+	959.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23006.0	NM_009690	11801.0	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	2.8140174622608	2.76397449605788	2.65075875656807	3.50881722600934	5.09517759218577	3.77799704771373	3.46180032490936	5.32490207933448	2.30594176710053	6.5926796175219e-05	0.00220127003852582
Merged-chr13-99287398-4	chr13	99287281	99287481	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57297.0	NM_026873	68927.0	Mm.276502	NM_026873	ENSMUSG00000021650	Ptcd2	1190005P08Rik	pentatricopeptide repeat domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128726545-3	chr2	128726420	128726620	+	570.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 1 of 18)	intron (NM_008587, intron 1 of 18)	27605.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-21071254-1	chr1	21071154	21071354	+	542.0	f0_balb.idr	intron (NM_177409, intron 1 of 10)	intron (NM_177409, intron 1 of 10)	7971.0	NM_177409	170829.0	Mm.185680	NM_177409	ENSMUSG00000041779	Tram2	C330003D03Rik	translocating chain-associating membrane protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-127506240-4	chr2	127506137	127506337	+	839.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019789, intron 2 of 8)	intron (NM_019789, intron 2 of 8)	15155.0	NM_001291005	56461.0	Mm.315292	NM_019789	ENSMUSG00000079056	Kcnip3	4933407H12Rik|AI413860|Csen|DREAM|KChIP3|R74849	Kv channel interacting protein 3, calsenilin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-96616053-2	chr10	96615953	96616153	+	801.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007569)	promoter-TSS (NM_007569)	-948.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-85374168-3	chr6	85374064	85374264	+	962.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177466, exon 1 of 5)	exon (NM_177466, exon 1 of 5)	470.0	NM_177466	52055.0	Mm.220334	NM_177466	ENSMUSG00000051343	Rab11fip5	9130206P09Rik|C75969|D6Ertd32e|GAF1|RIP11	RAB11 family interacting protein 5 (class I)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-45391275-2	chr13	45391175	45391375	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_153789, exon 2 of 7)	exon (NM_153789, exon 2 of 7)	1533.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	0.489623280356092	1.39788392741597	0.3330836325529	1.34962593009183	0.648579555280224	0.346178174955475	0.335461531431095	0.326164530936666	-3.13124548075913	0.0911025233377021	0.466715659695025
Merged-chr1-74817024-4	chr1	74816920	74817120	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	25001.0	NM_009518	22409.0	Mm.5130	NM_009518	ENSMUSG00000026167	Wnt10a	-	wingless-type MMTV integration site family, member 10A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-63377645-4	chr10	63377520	63377720	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	-4823.0	NM_001253685	30045.0	Mm.32550	NM_013888	ENSMUSG00000036764	Dnajc12	Jdp1|mJDP1	DnaJ heat shock protein family (Hsp40) member C12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-117843740-4	chr12	117843636	117843836	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146040)	promoter-TSS (NM_146040)	-125.0	NM_146040	217946.0	Mm.281149	NM_146040	ENSMUSG00000021175	Cdca7l	BC006933|JPO2	cell division cycle associated 7 like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-120955365-4	chr6	120955256	120955456	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001270475, intron 27 of 31)	intron (NM_001270475, intron 27 of 31)	-3488.0	NR_138099	215458.0	Mm.122399	NR_138099		LOC215458	-	uncharacterized LOC215458	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-65353770-2	chr3	65353670	65353870	+	633.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357358, intron 8 of 13)	intron (NM_001357358, intron 8 of 13)	-4341.0	NR_040390	319798.0	Mm.445698	NR_040390		A730090N16Rik	-	RIKEN cDNA A730090N16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-72219709-4	chr8	72219616	72219816	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026455)	promoter-TSS (NM_026455)	-14.0	NM_026455	67922.0	Mm.28327	NM_026455	ENSMUSG00000003039	Fam32a	2510049I19Rik|AW822030|OTAG-12|Otag12	family with sequence similarity 32, member A	protein-coding	5.81996200925795	5.80614041973537	6.29292519174943	5.65660052734109	5.76710484412356	6.3177950466653	6.29695742405913	6.60763851247823	0.396289568345487	0.116029490602796	0.533383733398323
Merged-chr1-173730242-1	chr1	173730142	173730342	+	659.0	f0_balb.idr	exon (NM_001204910, exon 5 of 8)	exon (NM_001204910, exon 5 of 8)	11567.0	NM_001204910	226691.0	Mm.440876	NM_001204910	ENSMUSG00000073490	Ifi207	AI607873|Pyhin-A|pyhinA	interferon activated gene 207	protein-coding	0.162080363904322	0.183586045920916	0.364361925008977	0.171149717456497	0.452963474711064	0.185160109211878	0.988402322377652	0.841269978508748	3.44185506975827	0.0806321251657881	1
Merged-chr4-128983932-4	chr4	128983857	128984057	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	-9267.0	NM_016895	11637.0	Mm.29460	NM_016895	ENSMUSG00000028792	Ak2	Ak-2|D4Ertd220e	adenylate kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-20181540-3	chr13	20181437	20181637	+	628.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	91030.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70084234-2	chr8	70084132	70084332	+	826.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177900, intron 1 of 4)	CpG	703.0	NM_177900	330790.0	Mm.152048	NM_177900	ENSMUSG00000007594	Hapln4	9330174O11|Bral2|Lpr4	hyaluronan and proteoglycan link protein 4	protein-coding	0.161229048545878	1.58247153920315	0.185951815620504	0.176813544178871	0.163581694456899	0.987428205186427	0.188531656415594	0.58502422655341	-0.806053586969367	0.678340895177455	0.994999283375466
Merged-chr10-56824338-4	chr10	56824287	56824487	+	940.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	392406.0	NR_152768	102640560.0	Mm.417249	NR_152768		Gm36595	-	predicted gene, 36595	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-162573914-4	chr1	162573821	162574021	+	989.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016796, intron 1 of 7)	MIRc|SINE|MIR	3093.0	NM_016796	53330.0	Mm.10699	NM_016796	ENSMUSG00000026696	Vamp4	D1Ertd147e|Vamp-4	vesicle-associated membrane protein 4	protein-coding	1.71017456775132	1.34147169894226	0.933550486149832	1.62774556535938	1.72553299747447	1.35075528129121	1.13971101163688	1.27257196113041	-0.18085942992562	0.88350718248719	0.998431161219273
Merged-chr8-80323382-1	chr8	80323282	80323482	+	677.0	f0_balb.idr	Intergenic	Intergenic	-170663.0	NM_010369	14934.0	Mm.13123	NM_010369	ENSMUSG00000051839	Gypa	AI853584|CD235a|GPA	glycophorin A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-125576592-2	chr7	125576491	125576691	+	781.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001008700, exon 11 of 11)	exon (NM_001008700, exon 11 of 11)	24309.0	NM_001008700	16190.0	Mm.233802	NM_010557	ENSMUSG00000030748	Il4ra	CD124|Il4r	interleukin 4 receptor, alpha	protein-coding	-2.05752322593321	-2.15521190974092	-2.16307242109104	-2.16952927915413	-2.17938029103484	-2.15350850414045	-2.16129297361887	-2.16837350464794	-0.683654500252594	0.846597994014493	1
Merged-chr3-153566307-4	chr3	153566201	153566401	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011372, intron 1 of 4)	Lx8b|LINE|L1	158832.0	NM_011372	20447.0	Mm.296453	NM_011372	ENSMUSG00000052544	St6galnac3	Siat7c	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-60508189-4	chr3	60508092	60508292	+	996.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253711, intron 1 of 7)	MIR|SINE|MIR	7013.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-37906279-2	chr15	37906167	37906367	+	634.5	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	54589.0	NM_001357023	382985.0	Mm.24738	NM_199476	ENSMUSG00000022292	Rrm2b	p53R2	ribonucleotide reductase M2 B (TP53 inducible)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-54968989-2	chr18	54968889	54969089	+	652.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175751, intron 2 of 9)	intron (NM_175751, intron 2 of 9)	21191.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-111095282-3	chr8	111095182	111095382	+	850.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198308, intron 1 of 17)	intron (NM_198308, intron 1 of 17)	537.0	NM_198308	319518.0	Mm.28350	NM_198308	ENSMUSG00000033624	Pdpr	4930402E16Rik|AU018056|mKIAA1990	pyruvate dehydrogenase phosphatase regulatory subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-84584068-4	chr16	84583961	84584161	+	985.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-95728.0	NR_040537	78023.0	Mm.243853	NR_040537		4930529L06Rik	-	RIKEN cDNA 4930529L06 gene	ncRNA	3.05035746279669	3.43581198113846	4.02551358373788	1.95675219756141	2.21498787531458	2.83265277245651	3.86112967549413	1.44074657906938	-0.668093587945814	0.424571971907211	0.901293602726532
Merged-chr11-5739160-2	chr11	5739060	5739260	+	670.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361588, intron 1 of 6)	intron (NM_001361588, intron 1 of 6)	2016.0	NM_001361590	72046.0	Mm.271657	NM_178623	ENSMUSG00000049680	Urgcp	2010005J08Rik|9130001I21Rik|AW060359|Urg4|mKIAA1507	upregulator of cell proliferation	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107549130-2	chr9	107549039	107549239	+	642.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_053253, exon 5 of 12)	exon (NM_053253, exon 5 of 12)	1829.0	NM_053253	114602.0	Mm.28331	NM_053253	ENSMUSG00000010044	Zmynd10	Blu	zinc finger, MYND domain containing 10	protein-coding	1.87790023747586	1.87718866870407	2.0483169181723	1.75686374338311	1.40335855121656	1.10267951500245	2.49442494579493	1.06106032531159	-0.542740931380564	0.640077935804042	0.982599433509505
Merged-chr8-46854310-2	chr8	46854210	46854410	+	710.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	114565.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-83535932-3	chr8	83535823	83536023	+	877.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5170.0	NM_146270	258267.0	Mm.377401	NM_146270	ENSMUSG00000047286	Olfr370	MOR267-16|MOR26716	olfactory receptor 370	protein-coding	1.73340372019843	1.07143340721884	1.03708696449184	1.84338363504148	2.45512447971052	3.19234167939043	2.31278884253698	1.01419203591806	2.35460177810825	0.0388755889313726	0.28132045597021
Merged-chr8-68348624-4	chr8	68348530	68348730	+	897.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_028182)	TTS (NM_028182)	-19829.0	NR_038189	73609.0	Mm.443247	NR_038181	ENSMUSG00000085197	1700125H03Rik	4930510D22Rik	RIKEN cDNA 1700125H03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-53937329-3	chr5	53937212	53937412	+	956.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1H2|LTR|ERVL-MaLR	-61211.0	NM_001081103	116873.0	Mm.265985	NM_054083	ENSMUSG00000039156	Stim2	-	stromal interaction molecule 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-69555697-2	chr5	69555597	69555797	+	825.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11B|LTR|ERVK	-1227.0	NM_172711	231279.0	Mm.21105	NM_172711	ENSMUSG00000029208	Guf1	4631409J12|AA407526|EF-4	GUF1 homolog, GTPase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-17704451-4	chr16	17704319	17704519	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285886, intron 2 of 16)	intron (NM_001285886, intron 2 of 16)	18481.0	NM_001285886	94112.0	Mm.208970	NM_033609	ENSMUSG00000012114	Med15	A230074L19Rik|AW536074|Pcqap|mPcqap	mediator complex subunit 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-97745413-2	chr7	97745313	97745513	+	978.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7166.0	NM_175105	66333.0	Mm.29756	NM_175105	ENSMUSG00000042797	Aqp11	1700015P13Rik|AI648923|sjds	aquaporin 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-17166238-2	chr11	17166138	17166338	+	562.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_024459, intron 1 of 5)	intron (NM_024459, intron 1 of 5)	6940.0	NM_024459	19058.0	Mm.41840	NM_024459	ENSMUSG00000033953	Ppp3r1	CaNB1|Cnb1|MCIP1	protein phosphatase 3, regulatory subunit B, alpha isoform (calcineurin B, type I)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-54724748-2	chr11	54724648	54724848	+	614.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178626, intron 3 of 5)	PB1D10|SINE|Alu	62955.0	NM_178626	72729.0	Mm.29476	NM_178626	ENSMUSG00000052298	Cdc42se2	2810404F18Rik|AA408783|AA536669|SPEC2	CDC42 small effector 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-74292344-3	chr13	74292232	74292432	+	775.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009644)	promoter-TSS (NM_009644)	-1.0	NM_001317351	11624.0	Mm.290446	NM_009644	ENSMUSG00000021575	Ahrr	mKIAA1234	aryl-hydrocarbon receptor repressor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-102108983-2	chr15	102108883	102109083	+	966.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355636, intron 11 of 28)	intron (NM_001355636, intron 11 of 28)	6049.0	NM_153533	209039.0	Mm.29389	NM_153533	ENSMUSG00000037003	Tns2	C1-ten|Tenc1|nep|nph	tensin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-105331695-1	chr14	105331595	105331795	+	574.0	f1_balb.idr	Intergenic	RLTR9E|LTR|ERVK	73022.0	NM_001190989	76273.0	Mm.290669	NM_029561	ENSMUSG00000053253	Ndfip2	0710001O20Rik|2810436B12Rik|9130207N19Rik|N4wbp5a|mKIAA1165	Nedd4 family interacting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-3386672-2	chr5	3386572	3386772	+	851.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 2 of 7)	intron (NM_009873, intron 2 of 7)	42779.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-24509109-2	chr13	24509009	24509209	+	939.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73080.0	NM_001286100	193385.0	Mm.217319	NM_029679	ENSMUSG00000036006	Ripor2	Fam65b	RHO family interacting cell polarization regulator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-65328121-4	chr14	65328023	65328223	+	990.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30553.0	NM_199029	380912.0	Mm.270087	NM_199029	ENSMUSG00000034522	Zfp395	BC053701|Gm910	zinc finger protein 395	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-103720402-2	chr14	103720302	103720502	+	893.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20970.0	NR_045148	70898.0	Mm.27548	NR_045148	ENSMUSG00000089707	Slain1os	4921525B02Rik	SLAIN motif family, member 1, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-14449960-3	chr19	14449923	14450123	+	890.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302951, intron 19 of 19)	intron (NM_001302951, intron 19 of 19)	-11517.0	NR_003027	19862.0		NR_003027	ENSMUSG00000095132	Rnu6	-	U6 small nuclear RNA	snRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-76409583-4	chr6	76409487	76409687	+	973.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5b|LINE|L1	-832890.0	NR_155299	74342.0	Mm.292568	NM_028880	ENSMUSG00000060780	Lrrtm1	4632401D06Rik|AW125451	leucine rich repeat transmembrane neuronal 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122336903-2	chr8	122336803	122337003	+	642.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_009569, exon 10 of 10)	exon (NM_009569, exon 10 of 10)	25925.0	NM_133202	170732.0	Mm.154808	NM_133202	ENSMUSG00000039079	Trhr2	TRH-R2	thyrotropin releasing hormone receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-87597724-4	chr16	87597621	87597821	+	941.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44391.0	NM_144854	224419.0	Mm.194466	NM_144854	ENSMUSG00000025610	Map3k7cl	C21orf7|ORF63|Tak1l	Map3k7 C-terminal like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81021127-2	chr15	81021027	81021227	+	941.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001082536, intron 6 of 13)	intron (NM_001082536, intron 6 of 13)	43362.0	NM_134091	105835.0	Mm.274943	NM_134091	ENSMUSG00000042303	Sgsm3	1810012I01Rik|AI428557|BB175482|Cip85|R75178|RUSC3|Rutbc3	small G protein signaling modulator 3	protein-coding	-0.824497566677758	-0.814903851980546	-0.818306419692347	-0.820637457766893	-0.258685029129477	-0.812124547146492	-0.48677167724284	-0.820230539708979	3.11464082741708	0.293928459650856	1
Merged-chr10-44638839-4	chr10	44638751	44638951	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-180103.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-108749221-3	chr8	108749109	108749309	+	948.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007496, intron 1 of 9)	intron (NM_007496, intron 1 of 9)	34565.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-91685967-5	chr6	91685773	91685973	+	969.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009320, intron 1 of 14)	MIRb|SINE|MIR	1806.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-119809320-4	chr6	119809222	119809422	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155458, intron 2 of 18)	intron (NR_155458, intron 2 of 18)	38828.0	NM_053204	111173.0	Mm.288860	NM_053204	ENSMUSG00000030172	Erc1	4930404L01Rik|5033405M01Rik|9630025C19Rik|B430107L16Rik|CAST2|ELKS|Elks1|RAB6IP2A|RAB6IP2B|Rab6ip2|mKIAA1081	ELKS/RAB6-interacting/CAST family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-103479581-3	chr14	103479489	103479689	+	713.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33752.0	NM_022886	64929.0	Mm.244003	NM_022886	ENSMUSG00000022123	Scel	9230114I02Rik	sciellin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-169355102-1	chr2	169355002	169355202	+	732.0	f1_c57bl6.idr	Intergenic	Intergenic	-278544.0	NM_080455	228911.0	Mm.315789	NM_080455	ENSMUSG00000047907	Tshz2	2900073F20Rik|B830045G17|Mtsh2|Sdccag33l|Tsh2|Zfp218|mKIAA4248|teashirt2	teashirt zinc finger family member 2	protein-coding	-2.18292257394068	-2.15545247547656	-2.03304972317742	-2.17058342868585	-2.18099422382073	-2.1536522739386	-2.16187909550322	-2.16936197735154	-0.683654500252594	0.846597994014493	1
Merged-chr5-139781026-2	chr5	139780926	139781126	+	872.125	f1_balb.idr|f1_c57bl6.idr	Intergenic	ZP3AR|Satellite|Satellite	-5348.0	NM_026748	68510.0	Mm.292942	NM_026748	ENSMUSG00000029547	Ints1	1110015K06Rik	integrator complex subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-61364521-4	chr3	61364438	61364638	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028712)	promoter-TSS (NM_028712)	31.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-89340192-2	chr7	89340092	89340292	+	658.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360746, intron 2 of 14)	MLT1J-int|LTR|ERVL-MaLR	-1405.0	NM_001360745	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-123932533-3	chr9	123932430	123932630	+	922.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A|LTR|ERVL-MaLR	36162.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-96735896-4	chr15	96735832	96736032	+	897.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36204.0	NM_175121	67760.0	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-123919173-2	chr1	123919073	123919273	+	684.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_199021, intron 1 of 25)	B4A|SINE|B4	126386.0	NM_199021	269109.0	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-157078182-1	chr2	157078082	157078282	+	1000.0	f0_c57.idr	intron (NM_001164663, intron 1 of 14)	intron (NM_001164663, intron 1 of 14)	1083.0	NM_001164663	320706.0	Mm.79466	NM_001164663	ENSMUSG00000055485	Soga1	9830001H06Rik|AI426038|D430036N24Rik|Soga	suppressor of glucose, autophagy associated 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-14148132-4	chr10	14148015	14148215	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358782, intron 9 of 9)	RLTR17|LTR|ERVK	181736.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81466672-4	chr15	81466543	81466743	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019712, intron 1 of 4)	CpG	327.0	NM_019712	56438.0	Mm.29405	NM_019712	ENSMUSG00000022400	Rbx1	1500002P15Rik|AA517855|ROC1	ring-box 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-64917254-2	chr12	64917154	64917354	+	601.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001025605)	promoter-TSS (NM_001025605)	-657.0	NM_001025605	217648.0	Mm.341586	NM_001025605	ENSMUSG00000047227	Gm527	-	predicted gene 527	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-47378888-4	chr4	47378785	47378985	+	987.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001312868, intron 1 of 8)	MTC|LTR|ERVL-MaLR	-7331.0	NM_001312869	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-58018651-2	chr15	58018551	58018751	+	691.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15643.0	NM_029418	75758.0	Mm.455792	NM_029418	ENSMUSG00000101892	9130401M01Rik	AI849328	RIKEN cDNA 9130401M01 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-52742247-4	chr5	52742134	52742334	+	984.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025951, intron 1 of 9)	intron (NM_025951, intron 1 of 9)	660.0	NM_025951	67073.0	Mm.248647	NM_025951	ENSMUSG00000029186	Pi4k2b	2610042N09Rik|4933409G22Rik	phosphatidylinositol 4-kinase type 2 beta	protein-coding	3.33864644756501	4.99847776912927	3.35543534730621	3.82790064610116	4.00126998532517	2.16850565953359	4.88663398644752	3.37066299100046	-0.167422635243443	0.796826618137706	0.998431161219273
Merged-chr14-117141464-1	chr14	117141364	117141564	+	689.0	f1_c57bl6.idr	intron (NM_011821, intron 1 of 8)	intron (NM_011821, intron 1 of 8)	216167.0	NM_011821	23888.0	Mm.440025	NM_011821	ENSMUSG00000058571	Gpc6	-	glypican 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116222318-1	chr11	116222218	116222418	+	571.0	f1_balb.idr	exon (NM_025276, exon 22 of 22)	exon (NM_025276, exon 22 of 22)	6316.0	NR_004853	69681.0	Mm.33677	NR_004853	ENSMUSG00000092300	Cdk3-ps	2310050O10Rik|Cdk3	cyclin-dependent kinase 3, pseudogene	pseudo	1.09594464770887	0.729331259062416	1.31392854623601	1.15896157945708	0.700048332488357	1.10773575154501	1.32597477639022	1.16546095081676	0.00954747246963992	0.99465927296828	0.998431161219273
Merged-chr5-124900021-4	chr5	124899924	124900124	+	876.479126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37319.0	NM_001081750	269704.0	Mm.138617	NM_001081750	ENSMUSG00000079215	Zfp664	AW060232|D930038J03Rik|ZFOC1|Znf664	zinc finger protein 664	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-93812459-4	chr16	93812398	93812598	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(ACTG)n|Simple_repeat|Simple_repeat	-17597.0	NR_151466	102633000.0	Mm.443436	NR_151466		2310043M15Rik	-	RIKEN cDNA 2310043M15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-93514118-2	chr1	93513927	93514127	+	705.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145519, intron 1 of 26)	intron (NM_145519, intron 1 of 26)	1923.0	NM_145519	227377.0	Mm.243091	NM_145519	ENSMUSG00000034066	Farp2	AI465173|BC009153|D030026M03Rik|Fir|mKIAA0793	FERM, RhoGEF and pleckstrin domain protein 2	protein-coding	0.919851250644379	0.460276945927049	0.446121669771693	2.00606176702749	0.787924373409257	0.463416390458305	0.449276583259093	1.13737270890079	-1.57135082125336	0.342970194016526	0.843839221497487
Merged-chr19-29376560-2	chr19	29376460	29376660	+	656.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021893, intron 3 of 6)	intron (NM_021893, intron 3 of 6)	9122.0	NM_021893	60533.0	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-82865924-2	chr18	82865824	82866024	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10027.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-106822160-3	chr1	106822039	106822239	+	814.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25414.0	NM_009190	20479.0	Mm.18705	NM_009190	ENSMUSG00000009907	Vps4b	8030489C12Rik|Skd1	vacuolar protein sorting 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-25910915-2	chr15	25910815	25911015	+	649.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001034851, intron 3 of 8)	intron (NM_001034851, intron 3 of 8)	-22637.0	NM_001277318	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-121215553-3	chr5	121215443	121215643	+	884.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4676.0	NM_181421	269700.0	Mm.184589	NM_181421	ENSMUSG00000042744	Hectd4	A130010L24|AU042671|BC019639|EG545802|Gm15800|mKIAA0614	HECT domain E3 ubiquitin protein ligase 4	protein-coding	1.11587791509857	1.68152415446734	0.990611152005526	2.26166414622149	1.12166083748337	1.39655680044423	0.993358321370237	1.95787293267046	-0.773192919614457	0.558976645000237	0.960321604678676
Merged-chr14-25540644-2	chr14	25540544	25540744	+	717.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 3 of 23)	intron (NM_183208, intron 3 of 23)	6205.0	NR_037236	100526533.0		NR_037236	ENSMUSG00000093081	Mir3075	mir-3075|mmu-mir-3075	microRNA 3075	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150915444-3	chr4	150915356	150915556	+	969.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4699.0	NM_011612	21942.0	Mm.244187	NM_011612	ENSMUSG00000028965	Tnfrsf9	4-1BB|A930040I11Rik|AA408498|AI325004|CDw137|Cd137|ILA|Ly63	tumor necrosis factor receptor superfamily, member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-25367914-2	chr2	25367814	25368014	+	940.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	-2251.0	NM_001033293	227620.0	Mm.33797	NM_001033293	ENSMUSG00000026956	Uap1l1	5730445F03Rik	UDP-N-acteylglucosamine pyrophosphorylase 1-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126599652-2	chr7	126599552	126599752	+	623.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4742.0	NM_145636	246779.0	Mm.222632	NM_145636	ENSMUSG00000044701	Il27	IL-27|IL-27p28|Il30|p28	interleukin 27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64237806-4	chr5	64237631	64237831	+	995.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 1 of 18)	Lx9|LINE|L1	7374.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	1.66149306055189	1.86946030043816	1.31309224478715	2.95535575328963	1.99261811709613	2.93805247477888	2.99481775950915	2.35926373494422	1.0510403860453	0.261228670952762	0.762408459680314
Merged-chr3-135826255-5	chr3	135826169	135826369	+	974.679993	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001135150, exon 2 of 9)	5' UTR (NM_001135150, exon 2 of 9)	479.0	NM_001135150	67547.0	Mm.30239	NM_026228	ENSMUSG00000053897	Slc39a8	4933419D20Rik|AA986696|BIGM103|ZIP-8|Zip8	solute carrier family 39 (metal ion transporter), member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25250021-4	chr7	25249906	25250106	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010155, intron 1 of 3)	CpG	752.0	NM_010155	13875.0	Mm.8068	NM_010155	ENSMUSG00000040857	Erf	-	Ets2 repressor factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-49066402-2	chr7	49066302	49066502	+	587.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111016, intron 2 of 38)	intron (NM_001111016, intron 2 of 38)	95756.0	NR_154465	108167511.0	Mm.400599	NR_154465		9130015G15Rik	-	RIKEN cDNA 9130015G15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-124850661-4	chr4	124850550	124850750	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001142727)	promoter-TSS (NM_001142727)	80.0	NM_001142727	68920.0	Mm.272397	NM_001142727	ENSMUSG00000078570	1110065P20Rik	C530005M16Rik	RIKEN cDNA 1110065P20 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-79854437-4	chr10	79854352	79854552	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008956)	promoter-TSS (NM_008956)	20.0	NM_001283013	19205.0	Mm.265610	NM_008956	ENSMUSG00000006498	Ptbp1	AA407203|AL033359|HNRPI|PTB-1|PTB2|PTB3|PTB4|Ptb|pPTB	polypyrimidine tract binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-92279924-4	chr5	92279832	92280032	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1751.0	NM_025972	67111.0	Mm.28890	NM_025972	ENSMUSG00000029413	Naaa	2210023K21Rik|3830414F09Rik|Asahl	N-acylethanolamine acid amidase	protein-coding	4.18863389337866	4.60780573545195	3.49419415911459	4.02102285818216	4.43286081610317	4.82243639392471	4.22685845392654	4.16084114245157	0.393397656589171	0.359854751941623	0.856306289008338
Merged-chr11-117652979-2	chr11	117652879	117653079	+	555.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1310.0	NM_198022	217351.0	Mm.40272	NM_198022	ENSMUSG00000025571	Tnrc6c	9930033H14Rik|mKIAA1582	trinucleotide repeat containing 6C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-42094705-3	chr19	42094579	42094779	+	938.9722289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145501, intron 1 of 8)	intron (NM_145501, intron 1 of 8)	4244.0	NM_145501	84095.0	Mm.117037	NM_145501	ENSMUSG00000025178	Pi4k2a	Pi4k2	phosphatidylinositol 4-kinase type 2 alpha	protein-coding	1.35547407880871	1.76706192162626	0.829397370740098	1.31381868914704	0.978050811042081	0.84647300880713	1.61012918363159	1.44400321196248	-0.370092682919556	0.782984005436044	0.998431161219273
Merged-chr18-32393807-2	chr18	32393707	32393907	+	678.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360876, intron 1 of 17)	MTEa|LTR|ERVL-MaLR	-15523.0	NR_045403	402767.0	Mm.385109	NR_045403	ENSMUSG00000097413	A830052D11Rik	-	RIKEN cDNA A830052D11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36303574-4	chr1	36303492	36303692	+	987.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4141.0	NM_001172206	214855.0	Mm.34316	NM_145996	ENSMUSG00000037447	Arid5a	D430024K22Rik|Mrf1	AT rich interactive domain 5A (MRF1-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-99088369-3	chr9	99088274	99088474	+	659.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029094, intron 8 of 23)	intron (NM_029094, intron 8 of 23)	51837.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-84985714-1	chr1	84985614	84985814	+	703.0	f1_balb.idr	Intergenic	ORR1E-int|LTR|ERVL-MaLR	-50631.0	NM_027921	71781.0	Mm.158754	NM_027921	ENSMUSG00000026220	Slc16a14	1110004H10Rik	solute carrier family 16 (monocarboxylic acid transporters), member 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-4531898-4	chr8	4531801	4532001	+	739.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38496.0	NM_026058	67260.0	Mm.35511	NM_026058	ENSMUSG00000008206	Cers4	2900019C14Rik|Lass4|Trh1	ceramide synthase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120959093-2	chr11	120958950	120959150	+	721.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_030696)	TTS (NM_030696)	9983.0	NM_001038654	80879.0	Mm.28632	NM_030696	ENSMUSG00000025161	Slc16a3	Mct3|Mct4	solute carrier family 16 (monocarboxylic acid transporters), member 3	protein-coding	-1.58994551673671	-1.55912852307891	-1.56844783632235	-1.57610299769523	-1.18549093183599	-1.55710898902261	-1.56633814807757	-1.57473272746952	1.78703309985663	0.610309988231842	1
Merged-chr18-42514170-2	chr18	42514070	42514270	+	658.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360881, intron 1 of 20)	intron (NM_001360881, intron 1 of 20)	2683.0	NR_110344	56070.0	Mm.270511	NM_001039474	ENSMUSG00000024498	Tcerg1	2410022J09Rik|2900090C16Rik|AI428505|CA150b|FBP23|FBP28|Taf2s|ca150|p144	transcription elongation regulator 1 (CA150)	protein-coding	-1.00713421537989	-0.644353028711788	-1.00102090380735	-0.579777343550155	-1.00662642041827	-0.986784559765176	-0.998372111837536	-1.00335511141119	-2.8084397020151	0.368025058751712	1
Merged-chr12-85255651-4	chr12	85255532	85255732	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175337, intron 5 of 11)	intron (NM_175337, intron 5 of 11)	-9647.0	NR_105903	102466769.0		NR_105903	ENSMUSG00000098263	Mir6938	Gm27519|mmu-mir-6938	microRNA 6938	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-34034107-4	chr11	34033994	34034194	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155520, intron 4 of 4)	MTE2a|LTR|ERVL-MaLR	-12834.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122708154-2	chr5	122708057	122708257	+	1000.0	f0_balb.idr|f1_balb.idr	intron (NM_001310718, intron 1 of 10)	intron (NM_001310718, intron 1 of 10)	613.0	NM_001310718	18438.0	Mm.290884	NM_011026	ENSMUSG00000029470	P2rx4	AI504491|AW555605|D5Ertd444e|P2X4	purinergic receptor P2X, ligand-gated ion channel 4	protein-coding	5.02221519636323	4.11073676529779	5.19902572779602	4.82731497602345	5.05805231164986	5.13789238170066	5.1678777192988	4.64142589348147	0.191740721155901	0.58265057923738	0.966599221005409
Merged-chr1-180888867-4	chr1	180888783	180888983	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4225.0	NM_177099	320202.0	Mm.87078	NM_177099	ENSMUSG00000066652	Lefty2	6030463A22Rik|Ebaf|Lefta|Leftb|lefty-2|lefty-B	left-right determination factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-100683035-4	chr13	100682941	100683141	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183115, intron 5 of 11)	intron (NM_183115, intron 5 of 11)	13560.0	NM_001168386	76041.0	Mm.23977	NM_183115	ENSMUSG00000048924	Ccdc125	5830436D01Rik|AL023012	coiled-coil domain containing 125	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-69240511-1	chr18	69240411	69240611	+	542.0	f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-103981.0	NM_013685	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-72458471-4	chr9	72458369	72458569	+	743.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009359, exon 12 of 12)	3' UTR (NM_009359, exon 12 of 12)	19940.0	NM_008613	17427.0	Mm.387671	NM_008613	ENSMUSG00000032221	Mns1	AW546487	meiosis-specific nuclear structural protein 1	protein-coding	1.6374127278377	1.02646426465958	1.39026170107619	1.99836450331085	1.30491913415641	1.73989933410137	1.40005613547052	1.62727123794311	-0.157343434560924	0.89245782257112	0.998431161219273
Merged-chr1-37634847-2	chr1	37634747	37634947	+	780.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_028096, intron 3 of 9)	B2_Mm2|SINE|B2	84964.0	NM_028096	72097.0	Mm.142607	NM_028096	ENSMUSG00000026090	2010300C02Rik	-	RIKEN cDNA 2010300C02 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127536636-7	chr10	127536490	127536690	+	785.019043	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2031.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131703666-3	chr1	131703561	131703761	+	785.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311096, intron 4 of 4)	intron (NM_001311096, intron 4 of 4)	14966.0	NM_145509	226421.0	Mm.44508	NM_145509	ENSMUSG00000052688	Rab7b	5430435G22Rik	RAB7B, member RAS oncogene family	protein-coding	4.48673657004462	4.26321177557459	4.3373063548709	4.12565951149525	2.64893011240653	3.8881998933808	3.83570462115076	2.65075586412807	-1.31779272976693	0.0107743371250922	0.114873071824813
Merged-chr12-70937830-4	chr12	70937697	70937897	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019785)	promoter-TSS (NM_019785)	-60.0	NM_019785	56444.0	Mm.29317	NM_019785	ENSMUSG00000021076	Actr10	Actr11|Arp11	ARP10 actin-related protein 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-174564062-4	chr2	174563963	174564163	+	897.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-79471.0	NM_001099328	100043757.0	Mm.48711	NM_001099328	ENSMUSG00000050600	Zfp831	-	zinc finger protein 831	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-119271133-3	chr2	119271038	119271238	+	930.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145530)	promoter-TSS (NM_145530)	88.0	NM_145530	228543.0	Mm.120274	NM_145530	ENSMUSG00000034226	Rhov	A030005A06Rik|Arhv	ras homolog family member V	protein-coding	0.663355234423015	0.70469926780411	0.691420281662591	1.52001428151265	1.12724843831072	1.55127715807532	0.909997225142099	1.62062867532429	1.5066309569441	0.315559438600467	0.818081707936129
Merged-chr2-152335487-4	chr2	152335387	152335587	+	976.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17A2|LTR|ERVK	-2848.0	NM_019705	24105.0	Mm.182145	NM_019705	ENSMUSG00000027466	Rbck1	AL033326|HOIL-1|HOIL-1L|UIP28|Ubce7ip3	RanBP-type and C3HC4-type zinc finger containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-3674211-2	chr8	3674111	3674311	+	863.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-1820.0	NM_001357661	100503924.0	Mm.415621	NM_001357661	ENSMUSG00000089665	Fcor	2400009B08Rik	Foxo1 corepressor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-11009708-2	chr4	11009608	11009808	+	706.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2089.0	NM_175175	71801.0	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-115313871-3	chr9	115313744	115313944	+	863.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3423.0	NM_024222	68292.0	Mm.296158	NM_024222	ENSMUSG00000032437	Stt3b	1300006C19Rik|Simp	STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae)	protein-coding	2.69308620398828	1.48735104788	2.07062079791419	1.75476565912709	1.53682191784946	1.87781213997102	2.08708720498574	1.76339135401098	-0.73244446766924	0.459195390901483	0.9200778724175
Merged-chr10-80943790-2	chr10	80943690	80943890	+	771.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13699.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-38710625-4	chr6	38710508	38710708	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010433, intron 12 of 14)	intron (NM_010433, intron 12 of 14)	47539.0	NM_001101507	665180.0	Mm.349066	NM_001101507	ENSMUSG00000079598	Clec2l	AI414054|AW122724|Gm1064	C-type lectin domain family 2, member L	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88746026-4	chr3	88745912	88746112	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_018804, exon 4 of 4)	3' UTR (NM_018804, exon 4 of 4)	26587.0	NM_018804	229521.0	Mm.379376	NM_018804	ENSMUSG00000068923	Syt11	1500004A13Rik|3632445O20Rik|5430404N14Rik|6530420C11Rik|AI851970	synaptotagmin XI	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152430041-4	chr1	152429933	152430133	+	936.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177756, intron 1 of 11)	L1M3|LINE|L1	30166.0	NM_177756	269132.0	Mm.23782	NM_177756	ENSMUSG00000032649	Colgalt2	AI427652|D730024P12|Glt25d2	collagen beta(1-O)galactosyltransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33306773-3	chr16	33306674	33306874	+	857.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55318.0	NM_080557	69150.0	Mm.28196	NM_080557	ENSMUSG00000022808	Snx4	1810036H14Rik|AI037066	sorting nexin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-55153156-3	chr3	55153061	55153261	+	761.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177203, intron 4 of 7)	intron (NM_177203, intron 4 of 7)	10920.0	NR_110781	320604.0	Mm.213909	NM_177203	ENSMUSG00000048655	Ccdc169	A730037C10Rik	coiled-coil domain containing 169	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-126636096-2	chr2	126635996	126636196	+	782.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271469, intron 3 of 3)	intron (NM_001271469, intron 3 of 3)	-17418.0	NM_008230	15186.0	Mm.18603	NM_008230	ENSMUSG00000027360	Hdc	AW108189|Hdc-a|Hdc-c|Hdc-e|Hdc-s	histidine decarboxylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-84064821-3	chr4	84064721	84064921	+	852.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19942.0	NR_130998	78238.0	Mm.243903	NR_130998	ENSMUSG00000085217	6030471H07Rik	-	RIKEN cDNA 6030471H07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-50023616-2	chr11	50023516	50023716	+	821.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1715.0	NM_021540	59044.0	Mm.359004	NM_021540	ENSMUSG00000020376	Rnf130	2510042A13Rik|G1RZFP|G1rp|GOLIATH|GP	ring finger protein 130	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-114531345-2	chr7	114531244	114531444	+	877.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011055, intron 13 of 15)	intron (NM_011055, intron 13 of 15)	31628.0	NR_110407	244209.0	Mm.108037	NM_177382	ENSMUSG00000030670	Cyp2r1	-	cytochrome P450, family 2, subfamily r, polypeptide 1	protein-coding	1.04236779266538	0.344150887792585	0.337140711384075	0.760027390376599	0.8096016205278	0.345729026655426	0.338688190130405	0.7660867766646	-0.438988017166614	0.815211465351105	1
Merged-chr2-59162361-3	chr2	59162260	59162460	+	875.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 1 of 20)	intron (NM_175464, intron 1 of 20)	1510.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80919534-2	chr10	80919434	80919634	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A2|LTR|ERVL-MaLR	-1289.0	NM_010722	16907.0	Mm.7362	NM_010722	ENSMUSG00000062075	Lmnb2	-	lamin B2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-13740966-4	chr17	13740856	13741056	+	888.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022311, intron 1 of 2)	intron (NM_022311, intron 1 of 2)	-19585.0	NR_151731	17356.0	Mm.59167	NM_010806	ENSMUSG00000068036	Afdn	5033403D15Rik|AF6|Af-6|Afadin|Gm314|I-afadin|Mllt4|S-afadin	afadin, adherens junction formation factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81448541-2	chr15	81448441	81448641	+	686.900024	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347075, intron 8 of 9)	intron (NM_001347075, intron 8 of 9)	-17775.0	NM_019712	56438.0	Mm.29405	NM_019712	ENSMUSG00000022400	Rbx1	1500002P15Rik|AA517855|ROC1	ring-box 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34556414-4	chr17	34556307	34556507	+	882.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7888.0	NM_010929	18132.0	Mm.173813	NM_010929	ENSMUSG00000015468	Notch4	Int-3|Int3|N4	notch 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-186576793-2	chr1	186576693	186576893	+	892.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-18112.0	NR_131158	320449.0	Mm.404477	NR_131124	ENSMUSG00000103690	A730004F24Rik	-	RIKEN cDNA A730004F24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-102471162-4	chr15	102471109	102471309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001174073, intron 1 of 12)	CpG	577.0	NM_001174073	18521.0	Mm.236513	NM_011042	ENSMUSG00000056851	Pcbp2	AW412548|Hnrpx|alphaCP-2	poly(rC) binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-35156914-4	chr18	35156817	35157017	+	883.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009818, intron 3 of 17)	MTE2b|LTR|ERVL-MaLR	38005.0	NM_009818	12385.0	Mm.18962	NM_009818	ENSMUSG00000037815	Ctnna1	2010010M04Rik|AA517462|AI988031|Catna1	catenin (cadherin associated protein), alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-85894917-2	chr1	85894817	85895017	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_022417, intron 1 of 5)	intron (NM_022417, intron 1 of 5)	407.0	NM_022417	64294.0	Mm.29870	NM_022417	ENSMUSG00000026223	Itm2c	3110038L02Rik|BRI3|Bricd2c|E25|E25C|ITM3	integral membrane protein 2C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-78866992-2	chr2	78866892	78867092	+	875.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2055.0	NM_009454	22193.0	Mm.1485	NM_009454	ENSMUSG00000027011	Ube2e3	Ubce4|ubcM2	ubiquitin-conjugating enzyme E2E 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-86963237-4	chr17	86963190	86963390	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_145491, exon 1 of 5)	5' UTR (NM_145491, exon 1 of 5)	179.0	NM_145491	104215.0	Mm.826	NM_145491	ENSMUSG00000024143	Rhoq	Arhq|TC10A|Tc10	ras homolog family member Q	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-101797376-4	chr2	101797298	101797498	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355625, intron 1 of 8)	CpG	309.0	NM_175181	72446.0	Mm.24138	NM_175181	ENSMUSG00000032841	Prr5l	2600010E01Rik|4833411O04Rik|Protor-2|Protor2	proline rich 5 like	protein-coding	4.00576126418491	3.94692786864738	4.32115531259851	3.98295878007412	3.7531118716317	4.72884407522535	3.9209323813633	4.00269340802724	0.103385061491074	0.81681018489907	0.998431161219273
Merged-chr13-119642079-1	chr13	119641979	119642179	+	547.0	f1_c57bl6.idr	intron (NM_020279, intron 1 of 2)	MTA_Mm|LTR|ERVL-MaLR	18260.0	NM_020279	56838.0	Mm.143745	NM_020279	ENSMUSG00000074715	Ccl28	CCK1|MEC|Scya28	chemokine (C-C motif) ligand 28	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-8765511-2	chr4	8765411	8765611	+	603.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355382, intron 1 of 36)	intron (NM_001355382, intron 1 of 36)	14187.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55937380-2	chr19	55937280	55937480	+	712.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	42059.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-73292751-4	chr5	73292657	73292857	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159889)	promoter-TSS (NM_001159889)	-37.0	NM_001159887	68095.0	Mm.247039	NM_023429	ENSMUSG00000029152	Ociad1	6030432N09Rik|AI481327|AW557942|Asrij|B230209J16Rik|BB021357|Emi2|Imi2|OCIA|TPA018	OCIA domain containing 1	protein-coding	5.81935745223504	5.74193254802575	6.51783466455098	6.50327505987795	6.23613430303514	6.76771561758417	6.55629519627268	6.4462171631722	0.342225827663624	0.154621906949759	0.610069793551649
Merged-chr6-91576106-3	chr6	91575997	91576197	+	840.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60062.0	NM_026309	67678.0	Mm.246693	NM_026309	ENSMUSG00000034192	Lsm3	1010001J12Rik|2610005D18Rik|6030401D18Rik|SMX4|USS2	LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141545130-4	chr4	141545009	141545209	+	983.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1053.0	NR_030695	320456.0	Mm.32859	NM_177163		B330016D10Rik	-	RIKEN cDNA B330016D10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-100131906-2	chr12	100131806	100132006	+	815.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290303, intron 10 of 13)	intron (NM_001290303, intron 10 of 13)	19575.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-50583658-2	chr9	50583558	50583758	+	619.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2B1|LTR|ERVL	20191.0	NM_025848	66925.0	Mm.10406	NM_025848	ENSMUSG00000000171	Sdhd	3110001M13Rik|AVLL5809|C78570|PRO19626	succinate dehydrogenase complex, subunit D, integral membrane protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-183320947-4	chr1	183320835	183321035	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181732, intron 8 of 9)	intron (NM_181732, intron 8 of 9)	-23642.0	NR_151660	71678.0	Mm.392270	NM_027861	ENSMUSG00000046836	Brox	0610010K06Rik	BRO1 domain and CAAX motif containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70709378-1	chr8	70709278	70709478	+	580.0	f1_c57bl6.idr	Intergenic	Intergenic	-9165.0	NM_001195253	100502950.0	Mm.52981	NM_001195253	ENSMUSG00000095026	Gm3336	100041434|2410018E23Rik	predicted gene 3336	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75178879-4	chr11	75178780	75178980	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027136)	promoter-TSS (NM_027136)	-72.0	NM_027136	246257.0	Mm.41496	NM_027136	ENSMUSG00000038268	Ovca2	9030414M07Rik	candidate tumor suppressor in ovarian cancer 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5628080-3	chr17	5628041	5628241	+	731.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	135541.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-142017881-4	chr4	142017788	142017988	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_131014)	promoter-TSS (NR_131014)	-10.0	NR_131014	78917.0	Mm.139995	NR_131014	ENSMUSG00000085761	4930455G09Rik	-	RIKEN cDNA 4930455G09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-20810397-2	chr18	20810297	20810497	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-63993.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-151993266-2	chr4	151993226	151993426	+	627.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_172705, intron 2 of 3)	intron (NM_172705, intron 2 of 3)	2853.0	NM_172705	230936.0	Mm.25582	NM_172705	ENSMUSG00000047777	Phf13	BC029632|Phf5|SPOC1	PHD finger protein 13	protein-coding	-0.565191593622735	-0.553388767447319	0.124361340136679	-0.126224872536957	-0.564454658030392	-0.552517407728741	-0.556402078666166	-0.559716919111501	-3.44543098151196	0.208849830209699	1
Merged-chr10-71262628-4	chr10	71262527	71262727	+	901.9874880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145420, intron 1 of 6)	intron (NM_145420, intron 1 of 6)	22635.0	NM_145420	216080.0	Mm.270530	NM_145420	ENSMUSG00000019927	Ube2d1	UBCH5	ubiquitin-conjugating enzyme E2D 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-62357914-4	chr4	62357820	62358020	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355385, intron 1 of 27)	intron (NM_001355385, intron 1 of 27)	2676.0	NM_001355385	338355.0	Mm.357792	NM_001045528	ENSMUSG00000066151	Fkbp15	BB131447|C430014M02Rik|FKBO133|FKBP-133|FKBP-15|FKBP133|mKIAA0674	FK506 binding protein 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-142711200-7	chr6	142711146	142711346	+	793.676208	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CCCCCT)n|Simple_repeat|Simple_repeat	-8972.0	NM_001310143	20928.0	Mm.35670	NM_011511	ENSMUSG00000030249	Abcc9	AI414027|AI449286|SUR2A|SUR2B|Sur2	ATP-binding cassette, sub-family C (CFTR/MRP), member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-31295766-4	chr5	31295671	31295871	+	871.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_022424, exon 1 of 7)	5' UTR (NM_022424, exon 1 of 7)	161.0	NM_001356945	64339.0	Mm.292544	NM_022424	ENSMUSG00000038552	Fndc4	2810430J06Rik|6330410H20Rik|AB030187|AI838506|AW487863|FRCP1|Fnmp1	fibronectin type III domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-50924025-2	chr14	50923921	50924121	+	939.8333130000001	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009687)	promoter-TSS (NM_009687)	872.0	NM_133676	66246.0	Mm.274791	NM_133676	ENSMUSG00000006289	Osgep	1500019L24Rik|GCPL-1|PRSMG1	O-sialoglycoprotein endopeptidase	protein-coding	1.50203031744363	2.39508798214723	1.02408541418349	1.42560332338147	1.7623244982222	2.32457921685545	1.79567031988304	1.00864628188283	0.289121752802543	0.807195222975456	0.998431161219273
Merged-chr1-171394686-1	chr1	171394586	171394786	+	573.0	f1_balb.idr	intron (NM_001005508, intron 1 of 11)	intron (NM_001005508, intron 1 of 11)	5726.0	NM_001005508	226652.0	Mm.251048	NM_001005508	ENSMUSG00000048865	Arhgap30	6030405P05Rik|Gm102|mFLJ00267	Rho GTPase activating protein 30	protein-coding	-0.596727512220596	-0.585308766391373	-0.589050749857141	-0.591937159465819	-0.446941614831268	-0.383354668972931	-0.588225505747536	0.143599752226962	3.4398926903975	0.181888090732072	1
Merged-chr5-146246308-2	chr5	146246256	146246456	+	627.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153599, intron 1 of 12)	intron (NM_153599, intron 1 of 12)	15106.0	NM_153599	264064.0	Mm.260576	NM_153599	ENSMUSG00000029635	Cdk8	-	cyclin-dependent kinase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-170902717-2	chr1	170902617	170902817	+	748.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	BGLII_B|LTR|ERVK	10224.0	NM_001029984	435653.0	Mm.337931	NM_001029984	ENSMUSG00000070524	Fcrlb	FREB-2|FREB2|FcRL2|Fcrlm2|Fcry|mFCRL2	Fc receptor-like B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34411278-2	chr17	34411167	34411367	+	951.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163855, intron 1 of 23)	intron (NM_001163855, intron 1 of 23)	12447.0	NM_001163855	407788.0	Mm.73205	NM_001001177	ENSMUSG00000057246	BC051142	NG8|TSBP|Tesb|Tesbp	cDNA sequence BC051142	protein-coding	0.235589361988699	0.25444115531399	0.567330267704834	0.946462993179026	0.611793310031619	0.255833683884685	0.42625952145156	0.545649940328559	-0.491067811952678	0.78971262862055	1
Merged-chr6-72390533-4	chr6	72390441	72390641	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_016794, exon 1 of 3)	5' UTR (NM_016794, exon 1 of 3)	126.0	NM_016794	22320.0	Mm.1838	NM_016794	ENSMUSG00000050732	Vamp8	AU041171|Edb|endobrevin	vesicle-associated membrane protein 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-10260018-1	chr3	10259918	10260118	+	582.0	f0_balb.idr	intron (NM_001357159, intron 1 of 4)	intron (NM_001357159, intron 1 of 4)	-5766.0	NM_001357160	75497.0	Mm.47052	NM_029310	ENSMUSG00000027530	Fabp12	1700008G05Rik	fatty acid binding protein 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-59978365-2	chr10	59978265	59978465	+	933.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24440.0	NM_026937	69090.0	Mm.155839	NM_026937	ENSMUSG00000044475	Ascc1	1810015P09Rik|AI550520|ASC1p50|CGI-18	activating signal cointegrator 1 complex subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124729510-4	chr6	124729417	124729617	+	994.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077705, intron 3 of 15)	B1F2|SINE|Alu	3637.0	NM_013545	15170.0	Mm.271799	NM_013545	ENSMUSG00000004266	Ptpn6	70Z-SHP|Hcph|PTPTY-42|Ptp1C|SH-PTP1|SHP-1|hcp|me	protein tyrosine phosphatase, non-receptor type 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166689888-2	chr2	166689788	166689988	+	559.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	23944.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30465625-2	chr2	30465525	30465725	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	8574.0	NM_030244	72500.0	Mm.295464	NM_030244	ENSMUSG00000089762	Ier5l	2610524G09Rik	immediate early response 5-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-31063622-2	chr6	31063522	31063722	+	560.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029532)	promoter-TSS (NR_029532)	-529.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-86959777-1	chr3	86959677	86959877	+	789.0	f0_balb.idr	Intergenic	Intergenic	-26809.0	NM_001289449	12480.0	Mm.389465	NM_007640	ENSMUSG00000041750	Cd1d2	CD1.2|Cd1b|Ly-38	CD1d2 antigen	protein-coding	1.53984510577439	0.842083600498648	1.20388602616796	1.30890172184356	1.250014174095	0.845137381084612	1.21321626798122	1.89259806841713	0.441993655294156	0.740401956944046	0.998431161219273
Merged-chr11-28365561-3	chr11	28365482	28365682	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	218742.0	NM_001166661	216613.0	Mm.93759	NM_181577	ENSMUSG00000032878	Ccdc85a	-	coiled-coil domain containing 85A	protein-coding	3.39685083857816	1.80629355694951	2.82297585375671	3.12018618928785	4.60671346805517	4.91635886103025	3.95150473661869	4.77779320578896	2.36546674424541	1.15760839273023e-05	0.000522142311878846
Merged-chr10-12884789-4	chr10	12884688	12884888	+	886.470825	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-23053.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	1.66850737804965	2.91483751793185	1.32330142870722	2.45771936437037	3.10818750706429	1.8886382422536	2.01198359498032	2.7476158671975	0.62044369848944	0.511584331649787	0.94512318675548
Merged-chr2-173013105-2	chr2	173013005	173013205	+	628.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175112, intron 11 of 11)	intron (NM_175112, intron 11 of 11)	-8797.0	NM_019547	56190.0	Mm.485782	NM_019547	ENSMUSG00000027510	Rbm38	Rnpc1|Seb4|Seb4l	RNA binding motif protein 38	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139250451-1	chr5	139250351	139250551	+	672.0	f1_balb.idr	TTS (NM_024451)	TTS (NM_024451)	-1873.0	NM_001359238	67604.0	Mm.270137	NM_026269	ENSMUSG00000025858	Get4	1110007L15Rik|AW412535|Cee	golgi to ER traffic protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-143919612-2	chr1	143919512	143919712	+	682.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	84537.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-12444643-1	chr6	12444543	12444743	+	753.0	f1_balb.idr	intron (NM_001164805, intron 6 of 26)	Lx|LINE|L1	304610.0	NM_001164805	330267.0	Mm.11989	NM_001164805	ENSMUSG00000032625	Thsd7a	Gm837	thrombospondin, type I, domain containing 7A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-45662947-1	chr14	45662847	45663047	+	911.0	f1_c57bl6.idr	Intergenic	Intergenic	-4804.0	NM_001042719	114874.0	Mm.121918	NM_176845	ENSMUSG00000037697	Ddhd1	Mir5131|PA-PLA1	DDHD domain containing 1	protein-coding	1.73954276157203	1.77295090988241	0.803099001441256	2.37478127706816	1.6616715876534	0.828516665896742	0.807756321539755	0.789436135929656	-2.25030168795596	0.114971926472229	0.531605896377922
Merged-chr5-114594867-4	chr5	114594750	114594950	+	994.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004180, intron 2 of 2)	intron (NM_001004180, intron 2 of 2)	26599.0	NM_001004180	433940.0	Mm.194212	NM_001004180	ENSMUSG00000041930	Fam222a	-	family with sequence similarity 222, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-38090106-1	chr7	38090006	38090206	+	650.0	f1_c57bl6.idr	Intergenic	Intergenic	17384.0	NM_007633	12447.0	Mm.16110	NM_007633	ENSMUSG00000002068	Ccne1	AW538188|CycE1	cyclin E1	protein-coding	2.25457403041855	1.14239011437158	2.16520614454231	2.09882993336245	1.05574806819133	2.81389087239114	1.92768810841584	1.34154075353309	0.0157702712506487	0.988956727331508	0.998431161219273
Merged-chr16-89774455-3	chr16	89774425	89774625	+	928.7333369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43827.0	NM_001145887	21844.0	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-119471007-4	chr6	119470889	119471089	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009525, intron 1 of 4)	MTE2a|LTR|ERVL-MaLR	-3778.0	NM_001271758	22419.0	Mm.321818	NM_009525	ENSMUSG00000030170	Wnt5b	AW545702|Wnt-5b	wingless-type MMTV integration site family, member 5B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140381326-4	chr5	140381222	140381422	+	953.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172277, intron 1 of 10)	intron (NM_172277, intron 1 of 10)	7986.0	NM_172277	231834.0	Mm.27098	NM_172277	ENSMUSG00000029560	Snx8	B130023O14Rik	sorting nexin 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-113442588-4	chr6	113442500	113442700	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001205025)	promoter-TSS (NM_001205025)	31.0	NM_001243739	67767.0	Mm.2053	NM_026365	ENSMUSG00000051256	Jagn1	5830427H10Rik	jagunal homolog 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-102883203-3	chr2	102883115	102883315	+	857.56665	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039150, intron 1 of 13)	intron (NM_001039150, intron 1 of 13)	18450.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-100159737-4	chr12	100159640	100159840	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183155)	promoter-TSS (NM_183155)	-87.0	NM_183155	217827.0	Mm.224076	NM_183155	ENSMUSG00000021179	Nrde2	6720454P05Rik	nrde-2 necessary for RNA interference, domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-184853466-4	chr1	184853348	184853548	+	981.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7601.0	NM_133684	67247.0	Mm.177724	NM_133684	ENSMUSG00000073481	Marc2	2810484M10Rik|Mosc2|mARC1	mitochondrial amidoxime reducing component 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134794340-4	chr6	134794242	134794442	+	878.1749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151454, intron 1 of 1)	intron (NR_151454, intron 1 of 1)	-1308.0	NR_151455	105242798.0	Mm.398227	NR_151454		1700055D16Rik	-	RIKEN cDNA 1700055D16 gene	ncRNA	3.00104007008543	2.70000472984498	1.89137956601766	2.23587319748055	1.40044230562839	1.55684576136948	2.32350333972162	1.46546709683268	-1.89817680971882	0.0478720074240711	0.31768160678872
Merged-chr6-29536412-2	chr6	29536312	29536512	+	578.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252382, intron 8 of 8)	intron (NM_001252382, intron 8 of 8)	7130.0	NM_001252382	27056.0	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127030609-2	chr7	127030509	127030709	+	661.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145588, intron 9 of 13)	B3|SINE|B2	-4130.0	NM_010772	17188.0	Mm.378964	NM_010772	ENSMUSG00000030678	Maz	MAZI|PUR1|Pur-1|SAF-1|SAF-2	MYC-associated zinc finger protein (purine-binding transcription factor)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-14675680-4	chr8	14675571	14675771	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172910, intron 4 of 15)	intron (NM_172910, intron 4 of 15)	-212865.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-121808428-4	chr11	121808328	121808528	+	951.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21790.0	NM_029049	74675.0	Mm.61213	NM_029049	ENSMUSG00000039198	Ptchd3	4930451E13Rik|4933440L20Rik|RNDEu-3	patched domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-139577270-1	chr4	139577170	139577370	+	1000.0	f1_c57bl6.idr	intron (NM_001205173, intron 1 of 8)	intron (NM_001205173, intron 1 of 8)	2550.0	NM_001205173	212632.0	Mm.30464	NM_183148	ENSMUSG00000041025	Iffo2	C79267	intermediate filament family orphan 2	protein-coding	-0.313037572299936	-0.748808240089447	-0.751629606810895	-0.753795570959863	-0.501432972476491	-0.561591507267914	-0.751008686110444	-0.753417865353041	-0.182395101859219	0.948403583070472	1
Merged-chr4-9632581-2	chr4	9632481	9632681	+	999.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177856, intron 4 of 4)	intron (NM_001177856, intron 4 of 4)	11136.0	NM_001177853	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101347613-1	chr7	101347513	101347713	+	646.0	f1_c57bl6.idr	promoter-TSS (NM_001040111)	promoter-TSS (NM_001040111)	-456.0	NM_001040111	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	-0.687162058202856	-0.675969597382351	-0.341362927977542	-0.682462065135424	-0.686462592497879	-0.675144187320785	0.0238123252563228	-0.681967753271602	1.34130008988608	0.643630729345247	1
Merged-chr10-127115550-2	chr10	127115450	127115650	+	689.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_177614, intron 5 of 13)	MT2B|LTR|ERVL	5610.0	NM_177614	216440.0	Mm.295246	NM_177614	ENSMUSG00000040462	Os9	4632413K17Rik|AU022351	amplified in osteosarcoma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-67342297-2	chr7	67342197	67342397	+	922.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357324, intron 2 of 11)	intron (NM_001357324, intron 2 of 11)	30561.0	NM_001291192	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-9653681-4	chr9	9653604	9653804	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-240727.0	NR_105745	102466147.0		NR_105745	ENSMUSG00000098408	Mir6237	Gm27411|mmu-mir-6237	microRNA 6237	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-110735650-2	chr9	110735550	110735750	+	772.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083936, intron 1 of 13)	intron (NM_001083936, intron 1 of 13)	6960.0	NM_001083936	19228.0	Mm.3542	NM_011199	ENSMUSG00000032492	Pth1r	PPR|Pthr|Pthr1	parathyroid hormone 1 receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-94158992-5	chr13	94158935	94159135	+	850.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172589, intron 2 of 3)	intron (NM_172589, intron 2 of 3)	101239.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-44789171-3	chr17	44789029	44789229	+	872.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178652, intron 2 of 11)	intron (NM_178652, intron 2 of 11)	11963.0	NM_178652	109115.0	Mm.431327	NM_178652	ENSMUSG00000038954	Supt3	2310066G22Rik|AI315192|SPT3|SPT3L|Supt3h	suppressor of Ty 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-6315945-2	chr17	6315845	6316045	+	607.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166629, intron 1 of 4)	intron (NM_001166629, intron 1 of 4)	1529.0	NM_001166629	100310872.0	Mm.381893	NM_001166629	ENSMUSG00000092074	Dynlt1a	-	dynein light chain Tctex-type 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-92823584-2	chr8	92823484	92823684	+	704.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3713.0	NM_008610	17390.0	Mm.29564	NM_008610	ENSMUSG00000031740	Mmp2	Clg4a|GelA|MMP-2	matrix metallopeptidase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-49720016-4	chr11	49719928	49720128	+	896.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-7306.0	NM_212484	104625.0	Mm.247113	NM_212484	ENSMUSG00000020362	Cnot6	CCR4	CCR4-NOT transcription complex, subunit 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-12965822-4	chr7	12965715	12965915	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001362139)	promoter-TSS (NM_001362139)	-23.0	NM_001362140	243834.0	Mm.133086	NM_178732	ENSMUSG00000004500	Zfp324	A930002M05|D430030K24Rik|ZF5128	zinc finger protein 324	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-75050821-1	chr15	75050721	75050921	+	578.0	f1_balb.idr	Intergenic	Intergenic	-1984.0	NM_001252056	17067.0	Mm.1583	NM_010741	ENSMUSG00000079018	Ly6c1	AA682074|AA959465|Ly-6C|Ly-6C1|Ly6c	lymphocyte antigen 6 complex, locus C1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35353168-3	chr17	35353060	35353260	+	831.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MYSERV6-int|LTR|ERVK	10827.0	NM_010392	15013.0	Mm.427969	NM_010392	ENSMUSG00000091705	H2-Q2	BE136769|Gm11132|H-2Q2|gs14-2	histocompatibility 2, Q region locus 2	protein-coding	0.496520318606249	0.153877145957743	0.792295124964419	0.144171487835781	0.504880358590817	0.155114737288325	0.32240899473978	0.304178688224666	-0.735113462306046	0.700837253037995	1
Merged-chr8-106563757-4	chr8	106563666	106563866	+	991.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23377.0	NR_045470	68692.0	Mm.416843	NR_045470	ENSMUSG00000099139	1110028F18Rik	-	RIKEN cDNA 1110028F18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-37440717-3	chr16	37440626	37440826	+	750.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55768.0	NM_172440	207227.0	Mm.80170	NM_172440	ENSMUSG00000022829	Stxbp5l	9430094L02|A830015P08Rik|LLGL4|T2dm1|t2md1|tomosyn-2	syntaxin binding protein 5-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-124666583-3	chr2	124666506	124666706	+	954.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172537, exon 17 of 17)	3' UTR (NM_172537, exon 17 of 17)	13025.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127193059-2	chr10	127192959	127193159	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_030714, exon 4 of 6)	exon (NM_030714, exon 4 of 6)	-2190.0	NR_045715	100038591.0	Mm.441071	NR_045715	ENSMUSG00000097331	F420014N23Rik	-	RIKEN cDNA F420014N23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21528074-4	chr9	21527964	21528164	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198794, intron 1 of 6)	L2b|LINE|L2	1887.0	NM_206536	382062.0	Mm.325205	NM_206536	ENSMUSG00000057191	AB124611	Gm1706	cDNA sequence AB124611	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-73096030-3	chr11	73095839	73096039	+	843.4111330000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361245, intron 1 of 30)	intron (NM_001361245, intron 1 of 30)	5344.0	NM_172944	16407.0	Mm.96	NM_008399	ENSMUSG00000005947	Itgae	A530055J10|CD103|aM290|alpha-E1|alpha-M290	integrin alpha E, epithelial-associated	protein-coding	0.0982556395047481	-0.0255684282492274	0.287098927140394	0.665246144767394	0.332717022845936	-0.0244356087239749	-0.0294823649254793	-0.0337818044848005	-1.73418665377594	0.421825551518942	1
Merged-chr6-31160228-2	chr6	31160128	31160328	+	617.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_110471, intron 2 of 3)	intron (NR_110471, intron 2 of 3)	58246.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70593328-2	chr8	70593201	70593401	+	713.166687	f1_balb.idr|f1_c57bl6.idr	TTS (NM_007924)	TTS (NM_007924)	-1180.0	NM_023627	71780.0	Mm.29357	NM_023627	ENSMUSG00000019139	Isyna1	1300017C10Rik|AU018670	myo-inositol 1-phosphate synthase A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-72244970-2	chr1	72244870	72245070	+	595.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_155355, intron 1 of 3)	intron (NR_155355, intron 1 of 3)	977.0	NR_155355	320933.0	Mm.440953	NR_155355		D230017M19Rik	B930094L07Rik	RIKEN cDNA D230017M19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-156956513-2	chr1	156956413	156956613	+	880.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16887.0	NM_001357391	78255.0	Mm.28376	NM_023884	ENSMUSG00000026594	Ralgps2	1810020P17Rik|2210408F11Rik|4921528G01Rik|9130014M22Rik|AU043409|AW046161	Ral GEF with PH domain and SH3 binding motif 2	protein-coding	0.340079657992902	1.0903816745911	0.195443510070744	0.189329083969959	0.484495905134906	0.20506737386942	0.940372565084276	0.190400447033932	-0.144744129962988	0.940297055595463	1
Merged-chr9-62510722-4	chr9	62510622	62510822	+	937.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175484, intron 1 of 11)	intron (NM_175484, intron 1 of 11)	26322.0	NM_175484	235431.0	Mm.335229	NM_175484	ENSMUSG00000041729	Coro2b	CLIPINC|E130012P22Rik	coronin, actin binding protein, 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-71157053-2	chr6	71156953	71157153	+	646.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-12673.0	NM_178413	232078.0	Mm.37547	NM_178413	ENSMUSG00000054474	Thnsl2	BC051244|TSH2	threonine synthase-like 2 (bacterial)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-23616618-4	chr5	23616542	23616742	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009274)	promoter-TSS (NM_009274)	-71.0	NM_009274	20817.0	Mm.288728	NM_009274	ENSMUSG00000062604	Srpk2	AW226533|AW492537|AW547358|Wbp6|mSRPK2	serine/arginine-rich protein specific kinase 2	protein-coding	1.68256772920094	1.13234911298591	2.24732786982755	1.8910063900225	1.80712284112018	1.90511804631894	2.07439202229051	1.09653290317726	-0.0937144462041687	0.93438972384073	0.998431161219273
Merged-chr8-84700229-3	chr8	84700309	84700509	+	789.972229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001164560)	TTS (NM_001164560)	-1048.0	NM_008535	17095.0	Mm.4925	NM_008535	ENSMUSG00000034041	Lyl1	Lyl-1|bHLHa18	lymphoblastomic leukemia 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-59518399-4	chr11	59518317	59518517	+	980.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11777.0	NM_172941	268417.0	Mm.239793	NM_172941	ENSMUSG00000020472	Zkscan17	Nizp1|Zfp496|Znf496	zinc finger with KRAB and SCAN domains 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-70389894-2	chr4	70389794	70389994	+	747.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145990, intron 3 of 36)	intron (NM_145990, intron 3 of 36)	20541.0	NM_001313762	214444.0	Mm.370777	NM_145990	ENSMUSG00000039298	Cdk5rap2	2900018K03Rik|an|mKIAA1633	CDK5 regulatory subunit associated protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-120197010-3	chr6	120196886	120197086	+	710.833374	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347432, intron 1 of 3)	intron (NM_001347432, intron 1 of 3)	3163.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-105993951-4	chr1	105993855	105994055	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122675, intron 1 of 12)	CpG	3549.0	NM_001122675	227449.0	Mm.210188	NM_001122675	ENSMUSG00000038866	Zcchc2	9930114B20Rik|AW212015	zinc finger, CCHC domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80295038-2	chr7	80294938	80295138	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145150, intron 1 of 13)	intron (NM_145150, intron 1 of 13)	587.0	NM_001285998	233406.0	Mm.227274	NM_145150	ENSMUSG00000038943	Prc1	D7Ertd348e	protein regulator of cytokinesis 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-49251597-2	chr7	49251497	49251697	+	645.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175272, intron 1 of 37)	intron (NM_175272, intron 1 of 37)	5408.0	NM_175272	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-23981782-2	chr17	23981690	23981890	+	959.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6560.0	NM_013921	30943.0	Mm.142568	NM_013921	ENSMUSG00000024124	Prss30	2010015P21Rik|Disp|Disp1|Tmprss8	protease, serine 30	protein-coding	-1.58994551673671	-1.55912852307891	-1.56844783632235	-1.57610299769523	-1.18549093183599	-1.55710898902261	-1.56633814807757	-1.57473272746952	1.78703309985663	0.610309988231842	1
Merged-chr2-132358446-2	chr2	132358346	132358546	+	636.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	BGLII|LTR|ERVK	27001.0	NM_144944	246313.0	Mm.283777	NM_144944	ENSMUSG00000050558	Prokr2	B830005M06Rik|EG-VEGRF2|Gpcr73l1|Gpr73l1|PKR2	prokineticin receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-5712511-2	chr13	5712411	5712611	+	648.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	145581.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-51037014-2	chr19	51036912	51037112	+	608.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-358366.0	NM_001290356	58178.0	Mm.313672	NM_021377	ENSMUSG00000043531	Sorcs1	Sorcs|mSorCS	sortilin-related VPS10 domain containing receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-8098063-4	chr15	8097954	8098154	+	864.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358788, intron 2 of 3)	B3|SINE|B2	1155.0	NM_001358788	545085.0	Mm.321312	NM_001081402	ENSMUSG00000039828	Wdr70	4833422F06Rik	WD repeat domain 70	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-23194331-3	chr10	23194206	23194406	+	606.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010167, intron 3 of 18)	intron (NM_010167, intron 3 of 18)	155584.0	NM_001347372	14051.0	Mm.332128	NM_010167	ENSMUSG00000010461	Eya4	B130023L16Rik	EYA transcriptional coactivator and phosphatase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-23382764-4	chr1	23382668	23382868	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081079, intron 1 of 6)	CpG	407.0	NM_001081079	70155.0	Mm.28013	NM_001081079	ENSMUSG00000026158	Ogfrl1	2210417C17Rik	opioid growth factor receptor-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-13329125-2	chr13	13329025	13329225	+	979.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	64499.0	NM_031999	83924.0	Mm.379269	NM_031999	ENSMUSG00000021306	Gpr137b	AI788917|AU016435|AW546472|C730041E01|C80550|C80741|D13Abb1e|Tm7sf1	G protein-coupled receptor 137B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-30631258-4	chr14	30631145	30631345	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5037.0	NM_011103	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64808865-2	chr5	64808765	64808965	+	800.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008453, intron 1 of 5)	intron (NM_008453, intron 1 of 5)	5342.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133830583-4	chr4	133830508	133830708	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	44123.0	NM_001285506	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	5.2327782282017	5.38124731162416	6.15465631018408	5.72259273641732	5.19224827094547	4.93355731344784	4.87245710372309	4.49016345821433	-0.891066976639901	0.00541671603666867	0.071052943521812
Merged-chr10-51450607-2	chr10	51450507	51450707	+	774.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	-30005.0	NM_008147	14727.0	Mm.439661	NM_008147	ENSMUSG00000112023	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-34034113-3	chr10	34034015	34034215	+	835.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3482.0	NM_001162937	692132.0	Mm.383415	NM_001162937	ENSMUSG00000071340	Trappc3l	Bet3l	trafficking protein particle complex 3 like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-4629657-2	chr7	4629557	4629757	+	659.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_023440, exon 2 of 3)	exon (NM_023440, exon 2 of 3)	825.0	NM_023440	68255.0	Mm.389784	NM_023440	ENSMUSG00000045282	Tmem86b	C330014O21Rik	transmembrane protein 86B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-109433453-2	chr11	109433353	109433553	+	877.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252193, intron 5 of 7)	intron (NM_001252193, intron 5 of 7)	-6625.0	NR_040680	100503496.0	Mm.265874	NR_040680		Gm45916	-	predicted gene, 45916	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105259949-4	chr8	105259854	105260054	+	990.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001033161, exon 3 of 5)	exon (NM_001033161, exon 3 of 5)	4640.0	NM_001033161	71609.0	Mm.264255	NM_001033161	ENSMUSG00000031887	Tradd	9130005N23Rik|AA930854	TNFRSF1A-associated via death domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-92441059-3	chr16	92440969	92441169	+	775.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081549, intron 1 of 3)	intron (NM_001081549, intron 1 of 3)	25100.0	NM_001081549	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-45666313-1	chr14	45666213	45666413	+	641.5	f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-8170.0	NM_001042719	114874.0	Mm.121918	NM_176845	ENSMUSG00000037697	Ddhd1	Mir5131|PA-PLA1	DDHD domain containing 1	protein-coding	1.2354272464476	1.53602213229388	1.23308469154661	0.702243045166114	1.66991140717166	0.727467809884682	0.714875351913942	1.06099576458307	-0.351878971401528	0.813568719051992	0.998431161219273
Merged-chr8-105269783-4	chr8	105269688	105269888	+	962.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001256044)	promoter-TSS (NM_001256044)	-13.0	NM_011939	26386.0	Mm.89204	NM_011939	ENSMUSG00000033249	Hsf4	HSF 4|HSTF 4|HSTF4|ldis1|mHSF4	heat shock transcription factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34031678-4	chr17	34031573	34031773	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001205216)	promoter-TSS (NM_001205216)	17.0	NM_001077709	14977.0	Mm.18556	NM_008202	ENSMUSG00000024327	Slc39a7	AA408174|AI117660|AL024048|H-2Ke4|H2-Ke4|Ke-4|Ke4|Ring5|Zip7	solute carrier family 39 (zinc transporter), member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-3542175-2	chr13	3542075	3542275	+	577.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008112, intron 1 of 10)	intron (NM_008112, intron 1 of 10)	4100.0	NM_008112	14569.0	Mm.153226	NM_008112	ENSMUSG00000021218	Gdi2	GDI-B|GDIB|Gdi3	guanosine diphosphate (GDP) dissociation inhibitor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-65191165-1	chr18	65191065	65191265	+	906.5	f1_c57bl6.idr	intron (NM_001114386, intron 19 of 30)	intron (NM_001114386, intron 19 of 30)	-57696.0	NR_029600	387231.0		NR_029600	ENSMUSG00000065402	Mir122	Mir122a|Mirn122a|mir-122|mmu-mir-122	microRNA 122	ncRNA	1.78101480691056	1.28531209151464	1.09378793236367	1.05284646945581	0.519461737073955	0.559411721778587	0.546688697157424	0.535627129052109	-4.82936522317302	0.00306664485993698	0.0460687875995708
Merged-chr18-21001752-4	chr18	21001640	21001840	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001303011)	promoter-TSS (NM_001303011)	-217.0	NM_207623	56515.0	Mm.253542	NM_019706	ENSMUSG00000024317	Rnf138	2410015A17Rik|2810480D20Rik|STRIN|Trif|Trif-d	ring finger protein 138	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-19569667-2	chr4	19569573	19569773	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027769, intron 1 of 15)	CpG	435.0	NM_027769	70568.0	Mm.38390	NM_027769	ENSMUSG00000028228	Cpne3	5430428M23Rik|5730450C07Rik|C85108|CPN3	copine III	protein-coding	2.90077951827376	2.46171452933935	3.79138613034521	3.30983275369463	2.61691433617628	3.27967196411951	3.57368247421858	2.87076078086883	-0.134248953127726	0.837204053467868	0.998431161219273
Merged-chr10-24160575-4	chr10	24160492	24160692	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016797, intron 2 of 9)	intron (NM_016797, intron 2 of 9)	11275.0	NM_016797	53331.0	Mm.248042	NM_016797	ENSMUSG00000019998	Stx7	AI315064|AI317144|AW107239|Syn7	syntaxin 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96486231-2	chr3	96486131	96486331	+	779.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33925.0	NM_001256181	329716.0	Mm.275223	NM_183223	ENSMUSG00000046317	BC107364	D730018G16	cDNA sequence BC107364	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-77906431-2	chr9	77906331	77906531	+	679.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10934.0	NM_134255	68801.0	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-31468004-3	chr15	31467896	31468096	+	731.600037	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172606, intron 22 of 25)	MTB|LTR|ERVL-MaLR	-14307.0	NM_145852	252967.0	Mm.436668	NM_145852	ENSMUSG00000022236	Ropn1l	ASP|AV047578|Akapasp	ropporin 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80922100-4	chr10	80922039	80922239	+	983.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3894.0	NM_010722	16907.0	Mm.7362	NM_010722	ENSMUSG00000062075	Lmnb2	-	lamin B2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-43349840-4	chr7	43349766	43349966	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-1475.0	NM_001271019	233186.0	Mm.290569	NM_145581	ENSMUSG00000039013	Siglecf	Siglec5|mSiglec-F	sialic acid binding Ig-like lectin F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28232099-2	chr17	28231999	28232199	+	542.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011145)	promoter-TSS (NM_011145)	-655.0	NM_011145	19015.0	Mm.328914	NM_011145	ENSMUSG00000002250	Ppard	NUC-1|NUC1|Nr1c2|PPAR-beta|PPAR-delta|PPAR[b]|PPARdelta|Pparb|Pparb/d	peroxisome proliferator activator receptor delta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-90498163-2	chr3	90498063	90498263	+	821.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001293781)	TTS (NM_001293781)	-7150.0	NM_133854	20615.0	Mm.331182	NM_133854	ENSMUSG00000001018	Snapin	25kDa|AA407989|AV026596|Bloc1s7|Snap25bp|Snapap	SNAP-associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-80151055-4	chr18	80150939	80151139	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175028, intron 1 of 3)	C-rich|Low_complexity|Low_complexity	443.0	NM_175028	240442.0	Mm.26594	NM_175028	ENSMUSG00000053950	Adnp2	8430420L05Rik|BC024969|Kiaa0863|Zfp508|mKIAA0863	ADNP homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69921527-4	chr11	69921422	69921622	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166596)	promoter-TSS (NM_001166596)	-136.0	NM_181582	276770.0	Mm.18026	NM_181582	ENSMUSG00000078812	Eif5a	AA410058|D19Wsu54e|Eif4d|Eif5a1|eIF-4D|eIF-5A|eIF-5A-1|eIF-5A1	eukaryotic translation initiation factor 5A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76670215-3	chr15	76670112	76670312	+	798.422241	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007989)	promoter-TSS (NM_007989)	-264.0	NM_007989	14106.0	Mm.42011	NM_007989	ENSMUSG00000033837	Foxh1	Fast1|Fast2|fast-1|fast-2	forkhead box H1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4837805-2	chr16	4837705	4837905	+	589.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030192, intron 1 of 15)	MIRb|SINE|MIR	2389.0	NM_030192	78809.0	Mm.325551	NM_030192	ENSMUSG00000022518	4930562C15Rik	-	RIKEN cDNA 4930562C15 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25678575-2	chr7	25678475	25678675	+	901.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-2205.0	NM_001362154	232987.0	Mm.22849	NM_172148	ENSMUSG00000063439	B9d2	stumpy	B9 protein domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-87192616-2	chr1	87192516	87192716	+	606.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_021600, exon 5 of 12)	exon (NM_021600, exon 5 of 12)	2019.0	NM_021600	11447.0	Mm.2811	NM_021600	ENSMUSG00000026251	Chrnd	Achr-4|Acrd|L10076	cholinergic receptor, nicotinic, delta polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-33980928-8	chr6	33980844	33981044	+	903.587524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48504.0	NM_028886	74354.0	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-43642492-1	chr7	43642392	43642592	+	1000.0	f0_c57.idr	intron (NM_028236, intron 4 of 5)	B1_Mus1|SINE|Alu	7753.0	NM_028236	72431.0	Mm.158821	NM_028236	ENSMUSG00000030472	Ceacam18	2010110O04Rik	carcinoembryonic antigen-related cell adhesion molecule 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-95666877-4	chr11	95666788	95666988	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008831)	promoter-TSS (NM_008831)	-69.0	NM_008831	18673.0	Mm.263862	NM_008831	ENSMUSG00000038845	Phb	Bap32	prohibitin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-25827164-2	chr17	25827064	25827264	+	608.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173741, intron 4 of 8)	intron (NM_173741, intron 4 of 8)	-1879.0	NM_028101	72106.0	Mm.277599	NM_028101	ENSMUSG00000025736	Jmjd8	2610003J06Rik	jumonji domain containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-86961102-2	chr17	86961002	86961202	+	616.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2009.0	NM_145491	104215.0	Mm.826	NM_145491	ENSMUSG00000024143	Rhoq	Arhq|TC10A|Tc10	ras homolog family member Q	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76327433-4	chr15	76327348	76327548	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175399)	promoter-TSS (NM_175399)	51.0	NM_175399	109075.0	Mm.322752	NM_175399	ENSMUSG00000034259	Exosc4	1110039I09Rik|1500001N04Rik|Rrp41	exosome component 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-21423732-2	chr16	21423632	21423832	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285894, intron 1 of 45)	intron (NM_001285894, intron 1 of 45)	614.0	NM_001285894	209018.0	Mm.235683	NM_145948	ENSMUSG00000033653	Vps8	AI315068|AU040738|mKIAA0804	VPS8 CORVET complex subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-73427273-2	chr7	73427173	73427373	+	693.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001081345, exon 39 of 39)	3' UTR (NM_001081345, exon 39 of 39)	-51499.0	NR_040324	319783.0	Mm.349813	NR_040324	ENSMUSG00000097756	A730056A06Rik	C76391	RIKEN cDNA A730056A06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-34807052-3	chr2	34806939	34807139	+	962.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001164769, exon 7 of 7)	3' UTR (NM_001164769, exon 7 of 7)	-7127.0	NM_145522	227746.0	Mm.158705	NM_145522	ENSMUSG00000070953	Rabepk	8430412M01Rik|9530020D24Rik|AV073337|C87311|Rab9p40	Rab9 effector protein with kelch motifs	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-79993774-3	chr11	79993672	79993872	+	859.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199196, intron 1 of 15)	CpG	666.0	NM_199196	52615.0	Mm.283410	NM_199196	ENSMUSG00000017548	Suz12	2610028O16Rik|AI195385|AU016842|AW536442|D11Ertd530e|mKIAA0160	SUZ12 polycomb repressive complex 2 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98729438-4	chr11	98729323	98729523	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011869)	promoter-TSS (NM_011869)	12.0	NM_001361995	23989.0	Mm.246493	NM_011869	ENSMUSG00000017210	Med24	911GSE|AU040102|AW547152|D11Ertd307e|DRIP100|Gse2|Pparb2|Pparbp2|R75526|Thrap4|Trap100	mediator complex subunit 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-34240761-4	chr19	34240661	34240861	+	987.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001360716)	TTS (NM_001360716)	8136.0	NM_001360720	76630.0	Mm.130952	NM_029682	ENSMUSG00000024776	Stambpl1	1700095N21Rik|8230401J17Rik|ALMalpha|AMSH-FP	STAM binding protein like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-21689364-4	chr16	21689262	21689462	+	968.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001881, intron 1 of 1)	ORR1D2|LTR|ERVL-MaLR	5303.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-27369970-2	chr10	27369860	27370060	+	812.150024	f0_balb.idr|f1_balb.idr	intron (NM_008481, intron 4 of 63)	Lx8b|LINE|L1	-19906.0	NR_131034	75855.0	Mm.402080	NR_131034	ENSMUSG00000101636	4930579H20Rik	-	RIKEN cDNA 4930579H20 gene	ncRNA	0.91954414067574	0.990376473443275	0.968053353467314	1.36834237513313	2.14222758251409	2.05625871121569	2.08275108322694	2.01058563998916	3.91437140435504	0.00402172704276876	0.0563699545083406
Merged-chr7-3703367-2	chr7	3703267	3703467	+	863.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029767)	promoter-TSS (NM_029767)	-674.0	NM_029767	76846.0	Mm.13944	NM_029767	ENSMUSG00000006333	Rps9	3010033P07Rik|AL022771|AL022885	ribosomal protein S9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-108649396-4	chr9	108649292	108649492	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011790)	promoter-TSS (NM_011790)	16.0	NM_011790	23807.0	Mm.290447	NM_011790	ENSMUSG00000064145	Arih2	AI843547|ARI2|TRIAD1|UIP48	ariadne RBR E3 ubiquitin protein ligase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-11281757-3	chr10	11281660	11281860	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168297, intron 1 of 2)	CpG	173.0	NM_001168297	71865.0	Mm.276229	NM_027968	ENSMUSG00000047648	Fbxo30	1700026A16Rik|MUSA1	F-box protein 30	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-111933727-4	chr13	111933619	111933819	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	65783.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127042479-4	chr7	127042360	127042560	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145588)	promoter-TSS (NM_145588)	-40.0	NM_145588	110033.0	Mm.286488	NM_145588	ENSMUSG00000030677	Kif22	AU021460|C81217|Kid|Kif22a	kinesin family member 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-83596688-1	chr4	83596588	83596788	+	550.0	f1_c57bl6.idr	intron (NM_001355549, intron 7 of 24)	intron (NM_001355549, intron 7 of 24)	71143.0	NM_001355378	320226.0	Mm.180032	NM_029117	ENSMUSG00000052407	Ccdc171	4930418J05Rik|4930473A06Rik|A330015D16Rik	coiled-coil domain containing 171	protein-coding	2.12233541566905	1.85832929585169	1.66408242484578	0.921313643748287	0.898251061046672	1.87387248628917	1.67855668230569	0.92410536285239	-0.897150861994645	0.497323653858976	0.936897994490085
Merged-chr14-33856306-2	chr14	33856206	33856406	+	965.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-45023.0	NR_131113	218902.0	Mm.107791	NR_131113	ENSMUSG00000115751	4930503F20Rik	4930453C15	RIKEN cDNA 4930503F20 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-32905391-2	chr17	32905291	32905491	+	548.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001204335, exon 13 of 13)	3' UTR (NM_001204335, exon 13 of 13)	11696.0	NM_022434	64385.0	Mm.486449	NM_022434	ENSMUSG00000024292	Cyp4f14	1300014O15Rik|cyp4f-14	cytochrome P450, family 4, subfamily f, polypeptide 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52639733-2	chr13	52639633	52639833	+	788.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011518, intron 10 of 13)	B4|SINE|B4	42851.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-62063926-2	chr15	62063826	62064026	+	573.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_132746, intron 1 of 6)	CT-rich|Low_complexity|Low_complexity	24669.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81257401-4	chr10	81257253	81257453	+	952.275024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285854)	promoter-TSS (NM_001285854)	54.0	NM_001285853	17179.0	Mm.2918	NM_010768	ENSMUSG00000004933	Matk	CHK|HYL|Ntk|p56ntk	megakaryocyte-associated tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-134989643-3	chr1	134989576	134989776	+	781.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033409, intron 17 of 17)	intron (NM_001033409, intron 17 of 17)	27111.0	NM_001278115	67196.0	Mm.284587	NM_026024	ENSMUSG00000026429	Ube2t	2700084L22Rik|C80607	ubiquitin-conjugating enzyme E2T	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-42461281-3	chr19	42461211	42461411	+	814.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29523.0	NM_001356589	72832.0	Mm.313558	NM_145123	ENSMUSG00000042401	Crtac1	2810454P21Rik|AW047536|Crtac1B|Lotus	cartilage acidic protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-24178917-4	chr18	24178827	24179027	+	970.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-26417.0	NM_013814	14423.0	Mm.30249	NM_013814	ENSMUSG00000000420	Galnt1	-	polypeptide N-acetylgalactosaminyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33496153-2	chr16	33496053	33496253	+	618.333313	f1_balb.idr|f1_c57bl6.idr	exon (NM_011749, exon 9 of 9)	exon (NM_011749, exon 9 of 9)	-22176.0	NM_134251	171286.0	Mm.35253	NM_134251	ENSMUSG00000035506	Slc12a8	CCC9|E330020C02Rik	solute carrier family 12 (potassium/chloride transporters), member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-65113005-4	chr1	65112914	65113114	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175293, intron 5 of 7)	intron (NM_175293, intron 5 of 7)	-9651.0	NM_007774	12964.0	Mm.26904	NM_007774	ENSMUSG00000044429	Cryga	Cryg-4|DGcry-4	crystallin, gamma A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-163645815-5	chr2	163645660	163645860	+	972.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_012032)	promoter-TSS (NM_012032)	-617.0	NM_012032	26943.0	Mm.218473	NM_012032	ENSMUSG00000017707	Serinc3	AA959945|AA960047|AIGP1|DIFF33|TMS-1|Tde1	serine incorporator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129066489-3	chr4	129066377	129066577	+	727.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029219, intron 1 of 8)	L1_Mus2|LINE|L1	8206.0	NM_029219	75234.0	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-58559051-2	chr2	58558951	58559151	+	636.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110204, intron 1 of 12)	intron (NM_001110204, intron 1 of 12)	2359.0	NM_001355049	11477.0	Mm.689	NM_007394	ENSMUSG00000026836	Acvr1	ALK2|ActR-I|ActRIA|Acvr|Acvrlk2|Alk-2|Alk8|D330013D15Rik|SKR1|Tsk7L	activin A receptor, type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-17873643-3	chr17	17873506	17873706	+	803.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	10333.0	NM_013521	14293.0	Mm.56951	NM_013521	ENSMUSG00000045551	Fpr1	FPR|LXA4R|fMLF-R	formyl peptide receptor 1	protein-coding	2.83382887600523	3.65272310172765	2.86954515647681	2.98809336442616	2.66360975484215	3.46481690966352	1.90532191104924	3.09265206183912	-0.393189196787453	0.57581256796955	0.965286201225318
Merged-chr1-74437568-4	chr1	74437468	74437668	+	853.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001310662, exon 24 of 24)	3' UTR (NM_001310662, exon 24 of 24)	28184.0	NM_009509	22349.0	Mm.471601	NM_009509	ENSMUSG00000026175	Vil1	Vil	villin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-117470302-2	chr7	117470199	117470399	+	982.833374	f0_balb.idr|f0_c57.idr	intron (NM_175645, intron 1 of 11)	intron (NM_175645, intron 1 of 11)	89320.0	NM_175645	233781.0	Mm.461427	NM_175645	ENSMUSG00000030657	Xylt1	8030490L12	xylosyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-138435228-1	chr4	138435128	138435328	+	553.0	f0_balb.idr	intron (NM_026689, intron 1 of 3)	intron (NM_026689, intron 1 of 3)	556.0	NM_026689	68350.0	Mm.103413	NM_026689	ENSMUSG00000041241	Mul1	0610009K11Rik|AV000801|Gide	mitochondrial ubiquitin ligase activator of NFKB 1	protein-coding	1.33549153000047	0.884297235969136	1.84092276271459	2.04985165265196	1.0312265386738	2.13611608557725	0.868975740058054	1.07876124395504	-0.621056604603294	0.6343777432548	0.982417279970648
Merged-chr4-133009148-2	chr4	133009048	133009248	+	823.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2358.0	NM_146155	230793.0	Mm.31816	NM_146155	ENSMUSG00000037692	Ahdc1	D030015G18Rik	AT hook, DNA binding motif, containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-27620172-2	chr3	27620072	27620272	+	835.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356953, intron 4 of 26)	MLT1E1A|LTR|ERVL-MaLR	-35177.0	NR_037275	100526525.0		NR_037275	ENSMUSG00000092695	Mir3092	mir-3092|mmu-mir-3092	microRNA 3092	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115162463-2	chr11	115162363	115162563	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_012030)	promoter-TSS (NM_012030)	-878.0	NM_012030	26941.0	Mm.27842	NM_012030	ENSMUSG00000020733	Slc9a3r1	EBP-50|NHE-RF|NHERF-1|NHERF1	solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-93791264-3	chr10	93791174	93791374	+	696.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13B1|LTR|ERVK	-40281.0	NM_001206851	327799.0	Mm.491598	NM_183199	ENSMUSG00000020020	Usp44	E430004F17Rik	ubiquitin specific peptidase 44	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88772622-4	chr3	88772525	88772725	+	989.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018804)	promoter-TSS (NM_018804)	-26.0	NM_018804	229521.0	Mm.379376	NM_018804	ENSMUSG00000068923	Syt11	1500004A13Rik|3632445O20Rik|5430404N14Rik|6530420C11Rik|AI851970	synaptotagmin XI	protein-coding	5.11383800924552	5.25290719531948	4.71056989443554	5.53278931505006	5.78047725092446	5.20987956334519	5.59929851156945	5.58051567562921	0.436134301390028	0.140516051200913	0.585252964543454
Merged-chr2-37430837-4	chr2	37430742	37430942	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146253)	promoter-TSS (NM_146253)	77.0	NM_146253	241322.0	Mm.330182	NM_146253	ENSMUSG00000066798	Zbtb6	A830092L04Rik|ZID|Zfp482	zinc finger and BTB domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5725306-4	chr19	5725227	5725427	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114595, intron 1 of 17)	intron (NM_001114595, intron 1 of 17)	990.0	NM_001114595	114601.0	Mm.210447	NM_053252	ENSMUSG00000024937	Ehbp1l1	G430002G23Rik	EH domain binding protein 1-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-38561750-4	chr5	38561639	38561839	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011715)	promoter-TSS (NM_011715)	-144.0	NM_011715	22388.0	Mm.2654	NM_011715	ENSMUSG00000005103	Wdr1	Aip1|D5Wsu185e|rede	WD repeat domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115275989-2	chr11	115275937	115276137	+	841.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007997, intron 2 of 11)	intron (NM_007997, intron 2 of 11)	932.0	NM_007997	14149.0	Mm.4719	NM_007997	ENSMUSG00000018861	Fdxr	AR	ferredoxin reductase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-27081511-5	chr3	27081429	27081629	+	962.2666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA4A|LINE|L1	72325.0	NM_007900	13605.0	Mm.261453	NM_007900	ENSMUSG00000027699	Ect2	AI528536	ect2 oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-72984385-4	chr2	72984286	72984486	+	965.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045269, intron 1 of 2)	intron (NR_045269, intron 1 of 2)	-3940.0	NM_001018042	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16049676-4	chr7	16049528	16049728	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22217.0	NM_001347559	666528.0	Mm.290718	NM_001099277	ENSMUSG00000078796	Zfp541	EG666528|Znf541	zinc finger protein 541	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-85325284-4	chr6	85325193	85325393	+	854.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178639, intron 1 of 13)	intron (NM_178639, intron 1 of 13)	8129.0	NM_178639	94282.0	Mm.121485	NM_178639	ENSMUSG00000033720	Sfxn5	C230001H08Rik	sideroflexin 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-85288064-1	chr1	85287964	85288164	+	555.0	f1_balb.idr	Intergenic	Intergenic	-17498.0	NM_001037909	620078.0	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik	RIKEN cDNA C130026I21 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-24613626-2	chr13	24613526	24613726	+	681.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286101)	promoter-TSS (NM_001286101)	-980.0	NM_001286101	193385.0	Mm.217319	NM_029679	ENSMUSG00000036006	Ripor2	Fam65b	RHO family interacting cell polarization regulator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-19420868-2	chr17	19420768	19420968	+	559.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A2-int|LTR|ERVL-MaLR	58733.0	NM_001104551	665376.0	Mm.469859	NM_001104551	ENSMUSG00000090304	Vmn2r99	EG665376	vomeronasal 2, receptor 99	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-172500718-12	chr1	172500558	172500758	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178598, intron 1 of 4)	CpG	412.0	NM_178598	21346.0	Mm.271711	NM_178598	ENSMUSG00000026547	Tagln2	2700094C18Rik|SM22beta|Sm22B|Sm22a	transgelin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-30531003-2	chr16	30530903	30531103	+	712.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357415, intron 9 of 11)	intron (NM_001357415, intron 9 of 11)	19575.0	NM_172614	224090.0	Mm.241459	NM_172614	ENSMUSG00000022537	Tmem44	1700007N03Rik|9330161C17Rik|B230220N21	transmembrane protein 44	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-16637199-4	chr10	16637104	16637304	+	954.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	458578.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126695349-4	chr7	126695255	126695455	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175103)	promoter-TSS (NM_175103)	428.0	NM_029420	75764.0	Mm.280573	NM_029420	ENSMUSG00000059772	Slx1b	1110030E23Rik|2410170E21Rik|4833422P03Rik|AI853643|Giyd1|Giyd2	SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165945525-2	chr2	165945425	165945625	+	599.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47112.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-84918580-1	chr3	84918480	84918680	+	637.333313	f0_balb.idr	intron (NM_001177774, intron 3 of 12)	B4A|SINE|B4	-33631.0	NM_080428	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	-0.284900027605724	-0.518640068552388	-0.102390818597534	-0.524153633962536	-0.52751310962792	-0.336373501048241	-0.355216017799654	-0.523736525794815	-1.12739598212752	0.653488340742654	1
Merged-chr13-45971302-4	chr13	45971206	45971406	+	960.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6315.0	NM_009124	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-17623146-1	chr18	17623046	17623246	+	667.5	f0_balb.idr	Intergenic	Intergenic	-42156.0	NR_045374	75162.0	Mm.60874	NR_045374		4930545E07Rik	-	RIKEN cDNA 4930545E07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-67494818-4	chr8	67494722	67494922	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001168577)	promoter-TSS (NM_001168577)	-53.0	NM_001168577	17961.0	Mm.4695	NM_010874	ENSMUSG00000051147	Nat2	AV377607	N-acetyltransferase 2 (arylamine N-acetyltransferase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-137291815-1	chr5	137291715	137291915	+	604.0	f1_c57bl6.idr	exon (NM_001290010, exon 3 of 5)	exon (NM_001290010, exon 3 of 5)	-1965.0	NR_106196	102466887.0		NR_106196	ENSMUSG00000099145	Mir8116	Gm27485|mmu-mir-8116	microRNA 8116	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-81039912-4	chr3	81039823	81040023	+	973.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019971, intron 1 of 5)	intron (NM_019971, intron 1 of 5)	3507.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-93251954-4	chr13	93251847	93252047	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51810.0	NM_147176	26556.0	Mm.37533	NM_011982	ENSMUSG00000007617	Homer1	PSD-Zip45|SYN47|Ves-1|homer-1|vesl-1	homer scaffolding protein 1	protein-coding	4.02332968164587	5.03901405753437	4.64907598215413	4.52979651977439	3.67873959877904	4.87042207486849	4.54111942012707	4.01177531308992	-0.328915923584602	0.443552723887283	0.912075280648966
Merged-chr15-98700878-2	chr15	98700778	98700978	+	561.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	IMPB_01|Satellite|Satellite	-7349.0	NM_153518	105833.0	Mm.26205	NM_153518	ENSMUSG00000003354	Ccdc65	4933417K04Rik|AI428139|AU020178|NYD-SP28	coiled-coil domain containing 65	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-157838901-3	chr2	157838799	157838999	+	754.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025680, intron 11 of 15)	intron (NM_025680, intron 11 of 15)	-75754.0	NM_198627	277432.0	Mm.441156	NM_198627	ENSMUSG00000037843	Vstm2l	Gm691	V-set and transmembrane domain containing 2-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-92974788-4	chr1	92974724	92974924	+	872.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271766)	promoter-TSS (NM_001271766)	-523.0	NM_001271766	64095.0	Mm.152780	NM_022320	ENSMUSG00000026271	Gpr35	KPG_007	G protein-coupled receptor 35	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-132115215-1	chr3	132115115	132115315	+	540.0	f1_c57bl6.idr	intron (NM_020265, intron 1 of 3)	LSU-rRNA_Hsa|rRNA|rRNA	29923.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-50803351-2	chr14	50803261	50803461	+	856.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	4410.0	NR_002142	85029.0		NR_002142	ENSMUSG00000092837	Rpph1	Gm24821|H1RNA|Rmrp5|Rpr	ribonuclease P RNA component H1	ncRNA	-0.576381517562867	-0.553967484896055	-0.561092454309163	-0.566730494626041	-0.372673837060877	0.731501026663048	-0.559503671120779	-0.56573635100849	4.28927426500078	0.0642063427888445	1
Merged-chr15-100228344-4	chr15	100228261	100228461	+	966.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007497, intron 1 of 6)	CpG	502.0	NM_007497	11908.0	Mm.676	NM_007497	ENSMUSG00000023027	Atf1	-	activating transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141139786-4	chr4	141139650	141139850	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001025608)	promoter-TSS (NM_001025608)	46.0	NR_102344	213491.0	Mm.332006	NM_174996	ENSMUSG00000040842	Szrd1	1110022I03|D4Ertd22e	SUZ RNA binding domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-3916984-2	chr13	3916884	3917084	+	647.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_019671, intron 1 of 11)	intron (NM_019671, intron 1 of 11)	1236.0	NM_019671	56349.0	Mm.22261	NM_019671	ENSMUSG00000021215	Net1	Net1a|mNET1	neuroepithelial cell transforming gene 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-29839321-5	chr16	29839260	29839460	+	759.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	139764.0	NR_037689	328657.0	Mm.425982	NM_001033403		Gm1968	-	predicted gene 1968	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-32595383-4	chr16	32595279	32595479	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13517.0	NM_011638	22042.0	Mm.28683	NM_011638	ENSMUSG00000022797	Tfrc	2610028K12Rik|CD71|E430033M20Rik|Mtvr1|TFR|TFR1|TR|Trfr|p90	transferrin receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-3086111-2	chr17	3086011	3086211	+	667.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1928.0	NR_003519	328734.0	Mm.335641	NR_003519		Pisd-ps2	D030013I16Rik	phosphatidylserine decarboxylase, pseudogene 2	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-135167406-2	chr6	135167292	135167492	+	826.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013546, intron 1 of 3)	intron (NM_013546, intron 1 of 3)	823.0	NM_013546	15199.0	Mm.378937	NM_013546	ENSMUSG00000042770	Hebp1	Hebp|p22HBP	heme binding protein 1	protein-coding	1.65840505718838	3.38951998906675	2.31642093899529	4.73159189704264	3.86003387483128	3.83225266484889	1.8690983303603	3.51928579285247	-0.132148422517461	0.911973076131777	0.998431161219273
Merged-chr11-120517273-2	chr11	120517173	120517373	+	758.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13454.0	NM_008101	14527.0	Mm.22329	NM_008101	ENSMUSG00000025127	Gcgr	GR	glucagon receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45120250-1	chr7	45120150	45120350	+	540.0	f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-1507.0	NR_029560	387168.0		NR_029560	ENSMUSG00000065495	Mir150	Mirn150|mir-150|mmu-mir-150	microRNA 150	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-99162378-2	chr11	99162334	99162534	+	743.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7357.0	NM_007719	12775.0	Mm.2932	NM_007719	ENSMUSG00000037944	Ccr7	CC-CKR-7|CCR-7|CD197|Cdw197|Cmkbr7|EBI1|Ebi1h	chemokine (C-C motif) receptor 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-106173562-2	chr1	106173479	106173679	+	718.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_133821, intron 1 of 16)	intron (NM_133821, intron 1 of 16)	1710.0	NM_133821	98432.0	Mm.24115	NM_133821	ENSMUSG00000044340	Phlpp1	AI836256|Phlpp|Plekhe1|SCOP|mKIAA0606	PH domain and leucine rich repeat protein phosphatase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-91509192-1	chr13	91509092	91509292	+	565.0	f0_balb.idr	intron (NM_001360776, intron 1 of 15)	intron (NM_001360776, intron 1 of 15)	48095.0	NM_024186	66970.0	Mm.343095	NM_024186	ENSMUSG00000003992	Ssbp2	1500004K09Rik|2310079I02Rik|9330163K02Rik|A830008M03Rik|AU067692|AW558684|Hspc116|SSDP2	single-stranded DNA binding protein 2	protein-coding	-1.70064632323792	-1.81294470997006	-1.82198078978096	-1.82940329477929	-1.8407275618158	-1.81098655378014	-1.67775643191689	-1.82807466993338	0.0376840119903865	0.991491645451152	1
Merged-chr5-72829980-2	chr5	72829880	72830080	+	550.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013689, intron 1 of 17)	RMER1A|Other|Other	38468.0	NM_001113461	21682.0	Mm.319581	NM_013689	ENSMUSG00000029217	Tec	-	tec protein tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27629495-2	chr17	27629433	27629633	+	985.333374	f1_balb.idr|f1_c57bl6.idr	TTS (NM_025963)	TTS (NM_025963)	5709.0	NM_025963	67097.0	Mm.275810	NM_025963	ENSMUSG00000052146	Rps10	2210402A09Rik	ribosomal protein S10	protein-coding	1.46037115732204	1.77519902931915	1.30958817062526	1.41820397907404	1.47311465766918	1.99814763277822	0.922751097034699	0.908956211080236	-0.267155987126828	0.833693083253317	0.998431161219273
Merged-chr3-116862734-2	chr3	116862634	116862834	+	879.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009146, intron 1 of 16)	B1_Mur2|SINE|Alu	1054.0	NM_009146	20321.0	Mm.66293	NM_009146	ENSMUSG00000033386	Frrs1	AI131732|Sdfr2	ferric-chelate reductase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-75016641-4	chr14	75016529	75016729	+	861.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198642, intron 1 of 13)	intron (NM_198642, intron 1 of 13)	602.0	NM_198642	271221.0	Mm.320280	NM_198642	ENSMUSG00000034959	Rubcnl	5031414D18Rik|Gm744|Gm911|Kiaa0226l	RUN and cysteine rich domain containing beclin 1 interacting protein like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64381770-4	chr5	64381664	64381864	+	933.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	86178.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	3.2410146892915	2.36928334473517	1.42657875254004	3.23889937693471	3.31762204783216	2.21519469852971	2.30435606639622	2.06904179363608	-0.327269348040432	0.709384047514085	0.998431161219273
Merged-chr11-113619229-3	chr11	113619074	113619274	+	874.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009217)	promoter-TSS (NM_009217)	-307.0	NM_009217	20606.0		NM_009217	ENSMUSG00000047904	Sstr2	SRIF-1|SS2R|SSTR-2|Smstr-2|Smstr2|sst2	somatostatin receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-86618722-4	chr11	86618621	86618821	+	967.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356531, intron 7 of 11)	intron (NM_001356531, intron 7 of 11)	-34563.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75625478-3	chr11	75625390	75625590	+	649.333374	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008850, exon 11 of 12)	exon (NM_008850, exon 11 of 12)	-5530.0	NM_008916	19062.0	Mm.1458	NM_008916	ENSMUSG00000006127	Inpp5k	C62|Pps|SKIP	inositol polyphosphate 5-phosphatase K	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-17467923-1	chr16	17467823	17468023	+	556.0	f1_c57bl6.idr	intron (NM_001277231, intron 1 of 1)	intron (NM_001277231, intron 1 of 1)	15938.0	NM_007764	12929.0	Mm.21048	NM_007764	ENSMUSG00000006134	Crkl	1110025F07Rik|AA589403|AI325100|Crkol	v-crk avian sarcoma virus CT10 oncogene homolog-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-174311125-2	chr2	174311025	174311225	+	981.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310085, intron 2 of 12)	intron (NM_001310085, intron 2 of 12)	13266.0	NM_001310085	14683.0	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-92308890-3	chr5	92308824	92309024	+	727.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172713, intron 1 of 21)	B3|SINE|B2	1100.0	NM_172713	231452.0	Mm.86564	NM_172713	ENSMUSG00000029415	Sdad1	4931421J16|AA591032|AW538460	SDA1 domain containing 1	protein-coding	2.34547813800508	2.10089410083527	2.1836349107154	1.61129311281856	2.03336503442463	2.93214636476922	2.75193475532406	2.48419566739488	1.13991895083522	0.176838793374048	0.646570188136342
Merged-chr11-23236168-1	chr11	23236068	23236268	+	579.0	f0_balb.idr	Intergenic	Intergenic	-19873.0	NM_001035226	103573.0	Mm.217547	NM_134014	ENSMUSG00000020290	Xpo1	AA420417|Crm1|Exp1	exportin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127076291-4	chr10	127076185	127076385	+	656.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2622.0	NM_001301014	216439.0	Mm.336761	NM_001033263	ENSMUSG00000025422	Agap2	AGAP-2|Centg1|PIKE|cnt-g1|mKIAA0167	ArfGAP with GTPase domain, ankyrin repeat and PH domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-65922642-4	chr3	65922528	65922728	+	744.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35621.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	3.10485459903615	2.3548316295123	3.20905953957522	2.63559767264762	2.10634769606422	2.37271364062475	3.52035812437312	3.47775390224348	0.268680444264941	0.714484244144494	0.998431161219273
Merged-chr10-60958864-2	chr10	60958764	60958964	+	604.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1859.0	NR_130327	100316671.0		NR_130327	ENSMUSG00000080526	Mir466j	Mirn466j|mmu-mir-466j	microRNA 466j	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-65170782-1	chr18	65170682	65170882	+	557.0	f0_balb.idr	intron (NM_001114386, intron 13 of 30)	intron (NM_001114386, intron 13 of 30)	-78079.0	NR_029600	387231.0		NR_029600	ENSMUSG00000065402	Mir122	Mir122a|Mirn122a|mir-122|mmu-mir-122	microRNA 122	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101316812-2	chr15	101316712	101316912	+	607.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23600.0	NR_033803	77717.0	Mm.391998	NR_033803	ENSMUSG00000075408	6030408B16Rik	AI225877	RIKEN cDNA 6030408B16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-9582139-1	chr4	9582039	9582239	+	829.0	f1_c57bl6.idr	intron (NM_001177854, intron 11 of 11)	intron (NM_001177854, intron 11 of 11)	61578.0	NM_001177853	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-20590639-2	chr8	20590539	20590739	+	569.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24288.0	NM_001270553	100861668.0	Mm.491087	NM_001270553	ENSMUSG00000095294	Gm21119	-	predicted gene, 21119	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-10005398-4	chr2	10005286	10005486	+	918.3583369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027748, intron 2 of 6)	intron (NM_027748, intron 2 of 6)	43223.0	NM_027748	209361.0	Mm.86343	NM_027748	ENSMUSG00000025782	Taf3	140kDa|4933439M23Rik|AW539625|TAF140|TAFII-140|TAFII140|mTAFII140	TATA-box binding protein associated factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-130089365-4	chr5	130089252	130089452	+	862.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001130476, intron 1 of 5)	intron (NM_001130476, intron 1 of 5)	9982.0	NM_001130476	22021.0	Mm.332720	NM_013837	ENSMUSG00000034118	Tpst1	R75054|Tango13a	protein-tyrosine sulfotransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-137305942-4	chr5	137305847	137306047	+	867.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359602, intron 2 of 19)	intron (NM_001359602, intron 2 of 19)	1727.0	NM_031405	83701.0	Mm.387734	NM_031405	ENSMUSG00000037364	Srrt	2810019G02Rik|ASR2A|ASR2B|ASR2C|ASR2D|Ars2|Asr2	serrate RNA effector molecule homolog (Arabidopsis)	protein-coding	3.41430659878374	2.7536266994863	3.89081910261237	4.14447614645067	3.84354476571342	3.60905876235831	2.67612835085835	3.29662109304692	-0.34015902807318	0.563922248982624	0.960367595640396
Merged-chr10-75758916-2	chr10	75758816	75759016	+	853.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172549, intron 1 of 36)	ORR1B1|LTR|ERVL-MaLR	5441.0	NM_172549	104248.0	Mm.257404	NM_172549	ENSMUSG00000020196	Cabin1	A330070M20Rik|Cain|Ppp3in	calcineurin binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102495904-3	chr12	102495760	102495960	+	719.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013747, intron 12 of 12)	intron (NM_013747, intron 12 of 12)	25950.0	NM_013747	27277.0	Mm.273370	NM_013747	ENSMUSG00000021192	Golga5	Ret-II	golgi autoantigen, golgin subfamily a, 5	protein-coding	-0.609193251194111	-0.734339680765716	-0.737184062967704	-0.338234241799257	-0.382902907400805	-0.733696324073372	-0.736558084252085	-0.738986866686994	-0.536808749569367	0.84842524774723	1
Merged-chr15-73090793-4	chr15	73090697	73090897	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053068, intron 1 of 2)	CpG	385.0	NM_053068	93696.0	Mm.23095	NM_053068	ENSMUSG00000068391	Chrac1	2410152E03Rik|2810406L04Rik|YCL1	chromatin accessibility complex 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-35056609-4	chr7	35056511	35056711	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009884)	promoter-TSS (NM_009884)	-45.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-127626236-3	chr3	127626133	127626333	+	756.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GC_rich|Low_complexity|Low_complexity	-6903.0	NM_009718	11924.0	Mm.42017	NM_009718	ENSMUSG00000027967	Neurog2	Atoh4|Math4A|bHLHa8|ngn-2|ngn2	neurogenin 2	protein-coding	0.826703584128853	0.541723274848205	0.740419709914734	0.521032889586913	0.964332784235387	1.3828535583515	1.603565770494	0.522629369796278	2.63421084484534	0.104932402806121	0.505614043722025
Merged-chr6-120483503-2	chr6	120483403	120483603	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008359, exon 13 of 13)	3' UTR (NM_008359, exon 13 of 13)	10304.0	NM_033567	94047.0	Mm.23088	NM_033567	ENSMUSG00000094626	Tmem121b	AW048664|Cecr6	transmembrane protein 121B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-58346606-1	chr15	58346506	58346706	+	633.0	f1_c57bl6.idr	intron (NM_027211, intron 7 of 8)	intron (NM_027211, intron 7 of 8)	-22437.0	NM_177755	268807.0	Mm.124498	NM_177755	ENSMUSG00000022357	Klhl38	8230402K04Rik	kelch-like 38	protein-coding	0.139861917418896	1.28216086171218	0.15822792768535	0.151388407270244	0.593114786466785	0.168940917978051	0.16016944995394	0.778302720024585	-0.546984494430405	0.788025268492145	1
Merged-chr10-80612112-4	chr10	80611998	80612198	+	926.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019575, intron 5 of 6)	intron (NM_019575, intron 5 of 6)	2838.0	NR_105877	102465550.0		NR_105877	ENSMUSG00000099283	Mir6912	Gm27990|mmu-mir-6912	microRNA 6912	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-46611420-3	chr4	46611308	46611508	+	940.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198664, intron 9 of 12)	intron (NM_198664, intron 9 of 12)	-9479.0	NM_001164804	107684.0	Mm.416311	NM_178893	ENSMUSG00000028337	Coro2a	9030208C03Rik|AI563590|IR10	coronin, actin binding protein 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-144997335-1	chr4	144997235	144997435	+	586.0	f0_balb.idr	intron (NM_001276465, intron 67 of 69)	intron (NM_001276465, intron 67 of 69)	104198.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-10540984-2	chr17	10540884	10541084	+	595.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027032, intron 4 of 4)	intron (NM_027032, intron 4 of 4)	84768.0	NR_077238	319750.0	Mm.383485	NR_077237	ENSMUSG00000089633	A230009B12Rik	-	RIKEN cDNA A230009B12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-120478862-4	chr2	120478780	120478980	+	736.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109761, intron 1 of 20)	B3|SINE|B2	1971.0	NM_001109761	12335.0	Mm.458021	NM_007601	ENSMUSG00000079110	Capn3	AI323605|Capa-3|Capa3|Lp82|p94	calpain 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-19305642-3	chr3	19305551	19305751	+	812.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122759, intron 1 of 12)	intron (NM_001122759, intron 1 of 12)	5671.0	NM_001122759	18583.0	Mm.355614	NM_008802	ENSMUSG00000069094	Pde7a	AU015378|AW047537	phosphodiesterase 7A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-118407717-2	chr5	118407617	118407817	+	750.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-153002.0	NM_001347445	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-171345481-2	chr2	171345381	171345581	+	581.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	613674.0	NM_001163686	76829.0	Mm.41633	NM_029761	ENSMUSG00000027560	Dok5	2700055C10Rik	docking protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-121956432-4	chr2	121956333	121956533	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008545)	promoter-TSS (NM_008545)	-341.0	NM_008545	17147.0	Mm.389349	NM_008545	ENSMUSG00000074881	Mageb3	Mage-b3|Mage-ps1|Mage-rs3|Smage3	melanoma antigen, family B, 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-137748669-2	chr6	137748569	137748769	+	550.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011499, intron 7 of 9)	intron (NM_011499, intron 7 of 9)	-5908.0	NM_172733	232449.0	Mm.29181	NM_172733	ENSMUSG00000030225	Dera	2010002D22Rik|2500002K03Rik|DEOC	deoxyribose-phosphate aldolase (putative)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-68247159-1	chr8	68247059	68247259	+	1000.0	f0_c57.idr	Intergenic	Intergenic	-29369.0	NM_028182	72281.0	Mm.40974	NM_028182	ENSMUSG00000053886	Sh2d4a	2210402M20Rik|SH2A	SH2 domain containing 4A	protein-coding	0.710204286770995	1.37426386204555	1.95285179025312	0.731769743942276	1.85957025559283	0.764143057587902	0.748033667030832	1.53429092676404	0.0331327051851566	0.982802306342246	0.998431161219273
Merged-chr12-35889533-4	chr12	35889447	35889647	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36074.0	NM_207531	403205.0	Mm.190508	NM_207531	ENSMUSG00000036231	Agr3	BCMP11|E030025L21Rik|Gm888	anterior gradient 3	protein-coding	0.512776310483549	0.546505246858994	1.48229089994637	0.717888741984064	1.41715707903245	0.957182114840442	0.538035196115328	0.882691341755896	0.41760421132212	0.796446947624831	0.998431161219273
Merged-chr7-133037680-2	chr7	133037580	133037780	+	561.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009980, intron 2 of 10)	intron (NM_009980, intron 2 of 10)	-22433.0	NM_001170744	13017.0	Mm.246240	NM_009980	ENSMUSG00000030970	Ctbp2	AA407280|D7Ertd45e|Gtrgeo6|Ribeye	C-terminal binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-132312303-3	chr1	132312201	132312401	+	901.2000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3824.0	NM_001195025	74137.0	Mm.100666	NM_028778	ENSMUSG00000009772	Nuak2	1200013B22Rik|Omphk2|Snark|mKIAA0537	NUAK family, SNF1-like kinase, 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152582101-4	chr1	152582026	152582226	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 3 of 17)	intron (NM_016846, intron 3 of 17)	43091.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-33809569-2	chr14	33809469	33809669	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_131114)	TTS (NR_131114)	1714.0	NR_131114	218902.0	Mm.107791	NR_131113	ENSMUSG00000115751	4930503F20Rik	4930453C15	RIKEN cDNA 4930503F20 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-6609884-2	chr17	6609784	6609984	+	585.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_028305)	TTS (NR_028305)	8105.0	NM_001166630	100040563.0	Mm.457381	NM_001166630	ENSMUSG00000000579	Dynlt1c	100040603|Dynlt1d	dynein light chain Tctex-type 1C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70839795-4	chr8	70839745	70839945	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027560)	promoter-TSS (NM_027560)	-125.0	NM_027560	70807.0	Mm.24215	NM_027560	ENSMUSG00000002910	Arrdc2	4632416I05Rik|Ilad1	arrestin domain containing 2	protein-coding	6.89476949646949	6.54204238099827	7.5432701975695	7.44993844027093	6.77941746526515	6.27958791118247	7.35347323115347	6.96355354513778	-0.283500457308496	0.242226487932303	0.739349184581178
Merged-chr11-101732894-4	chr11	101732794	101732994	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144831)	promoter-TSS (NM_144831)	-62.0	NM_144831	217207.0	Mm.28186	NM_144831	ENSMUSG00000034931	Dhx8	Ddx8|mDEAH6|mKIAA4096	DEAH (Asp-Glu-Ala-His) box polypeptide 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-35930743-2	chr2	35930643	35930843	+	601.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029774, intron 3 of 9)	intron (NM_029774, intron 3 of 9)	48881.0	NM_029774	74410.0	Mm.21591	NM_028921	ENSMUSG00000026885	Ttll11	4932702F08Rik|4933424A20Rik|AU043211|D2Ertd624e	tubulin tyrosine ligase-like family, member 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-109100840-4	chr9	109100738	109100938	+	900.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172775, exon 3 of 38)	exon (NM_172775, exon 3 of 38)	5402.0	NM_172775	235611.0	Mm.53862	NM_172775	ENSMUSG00000053646	Plxnb1	2900002G15Rik|AU042020|mKIAA0407	plexin B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-144991974-4	chr7	144991866	144992066	+	934.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-52041.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	4.71094249014687	4.672929529682	3.48398757714909	3.28298066059401	3.47445671279022	3.02907960863037	3.4128330502269	4.51913818313024	-0.621680282198332	0.272391874996043	0.775631299106725
Merged-chr17-29268890-4	chr17	29268802	29269002	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_030561, exon 1 of 9)	5' UTR (NM_030561, exon 1 of 9)	114.0	NM_030561	80748.0	Mm.290116	NM_030561	ENSMUSG00000052712	BC004004	2400006G15Rik	cDNA sequence BC004004	protein-coding	4.16684924861625	4.53839559507863	4.27644332953561	4.77766213593102	4.55362450894786	4.91745778250908	4.77099400231711	5.00936435659712	0.451647449921496	0.211445869227024	0.700512509175108
Merged-chr5-86086924-4	chr5	86086795	86086995	+	857.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310639, intron 4 of 7)	intron (NM_001310639, intron 4 of 7)	15149.0	NM_001310639	56792.0	Mm.131237	NM_019992	ENSMUSG00000029254	Stap1	AI586015|Brdg1|STAP-1	signal transducing adaptor family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-87974942-2	chr11	87974821	87975021	+	679.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11664.0	NM_001168472	68097.0	Mm.246436	NM_026556	ENSMUSG00000020483	Dynll2	1700064A15Rik|6720463E02Rik|C87222|DLC8|DLC8b|Dlc2	dynein light chain LC8-type 2	protein-coding	-1.20406370813143	-1.56956373024278	-1.57884638916872	-1.58647144159385	-1.598104728449	-1.56755213932999	-1.57674499865798	-1.58510656085539	-1.70745470802464	0.626337835847419	1
Merged-chr11-54733675-1	chr11	54733575	54733775	+	682.5	f0_balb.idr	intron (NM_178626, intron 3 of 5)	ORR1F|LTR|ERVL-MaLR	54028.0	NM_178626	72729.0	Mm.29476	NM_178626	ENSMUSG00000052298	Cdc42se2	2810404F18Rik|AA408783|AA536669|SPEC2	CDC42 small effector 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-52676318-3	chr2	52676235	52676435	+	742.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285426)	promoter-TSS (NM_001285426)	-192.0	NM_001285426	12298.0	Mm.330223	NM_146123	ENSMUSG00000017412	Cacnb4	3110038O15Rik|Cchb4|lh	calcium channel, voltage-dependent, beta 4 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-31530233-4	chr15	31530125	31530325	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172606, intron 1 of 25)	intron (NM_172606, intron 1 of 25)	812.0	NM_172606	223455.0	Mm.272185	NM_172606	ENSMUSG00000039100	March6	3830408G03|F830029L24Rik|mKIAA0597	membrane-associated ring finger (C3HC4) 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-86494033-4	chr6	86493924	86494124	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5797.0	NR_040292	381792.0	Mm.333223	NR_040292	ENSMUSG00000101655	2310040G24Rik	-	RIKEN cDNA 2310040G24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-7184533-4	chr9	7184448	7184648	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357483)	promoter-TSS (NM_001357483)	43.0	NM_029775	76863.0	Mm.27293	NM_029775	ENSMUSG00000032002	Dcun1d5	3110001A18Rik|4833420K19Rik|AW060460|D430047L21Rik	DCN1, defective in cullin neddylation 1, domain containing 5 (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85378830-2	chr12	85378730	85378930	+	949.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4113.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-121549845-1	chr10	121549745	121549945	+	560.0	f1_balb.idr	intron (NM_019786, intron 20 of 20)	intron (NM_019786, intron 20 of 20)	36949.0	NM_019786	56480.0	Mm.34580	NM_019786	ENSMUSG00000020115	Tbk1	1200008B05Rik|AI462036|AW048562	TANK-binding kinase 1	protein-coding	1.51902718596246	1.72174555691429	1.10821494880765	1.24328905106088	1.32117816732762	0.923614891453023	1.77339142435212	1.24912481526637	-0.229143102232731	0.853103753577469	0.998431161219273
Merged-chr17-72962755-2	chr17	72962655	72962855	+	854.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	44450.0	NM_029999	77889.0	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19332977-4	chr7	19332881	19333081	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-12090.0	NM_001127324	13870.0	Mm.280913	NM_007948	ENSMUSG00000003549	Ercc1	Ercc-1	excision repair cross-complementing rodent repair deficiency, complementation group 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45154398-4	chr7	45154262	45154462	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001278207)	promoter-TSS (NM_001278207)	59.0	NM_001278207	68845.0	Mm.181689	NM_029406	ENSMUSG00000003423	Pih1d1	1110061L23Rik|4933413A04Rik|Nop17	PIH1 domain containing 1	protein-coding	-0.211688096057965	-0.187863317967502	1.05228761991481	-0.201538127484599	-0.210163501198808	-0.186151895380189	0.370796728476206	-0.200483224149551	-1.70931343727012	0.470863106416256	1
Merged-chr3-83841114-4	chr3	83840997	83841197	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_011905, exon 2 of 3)	5' UTR (NM_011905, exon 2 of 3)	511.0	NM_011905	24088.0	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47502200-4	chr17	47502098	47502298	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022015)	promoter-TSS (NM_022015)	93.0	NM_001356290	63856.0	Mm.275901	NM_022015	ENSMUSG00000023980	Taf8	AW260255|Tbn	TATA-box binding protein associated factor 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-47386320-4	chr9	47386220	47386420	+	848.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-143850.0	NM_001310841	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-40412600-3	chr1	40412488	40412688	+	772.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-16982.0	NM_001294171	17082.0	Mm.289824	NM_010743	ENSMUSG00000026069	Il1rl1	DER4|Fit-1|Ly84|ST2L|St2|St2-rs1|T1|T1/ST2	interleukin 1 receptor-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3774255-5	chr4	3774192	3774392	+	829.1094969999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 10 of 12)	BGLII_B|LTR|ERVK	59328.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	0.278888353031671	0.155004234916497	0.599635192504473	0.14451336451092	0.784445814590364	0.156338807746857	0.150389091984898	0.679483363818979	1.17208464356587	0.56197668606848	1
Merged-chr13-113359075-4	chr13	113358991	113359191	+	991.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	143753.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-132226881-4	chr7	132226797	132226997	+	789.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72156.0	NM_018867	55987.0	Mm.471654	NM_018867	ENSMUSG00000030862	Cpxm2	4632435C11Rik|CPX-2|Cpx2	carboxypeptidase X 2 (M14 family)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-109507876-4	chr12	109507759	109507959	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33137.0	NR_027652	17263.0	Mm.289645	NM_144513	ENSMUSG00000021268	Meg3	2900016C05Rik|3110050O07Rik|6330408G06Rik|AI425946|AW108224|D12Bwg1266e|Gtl2|R74756|R75394	maternally expressed 3	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-81343057-2	chr8	81342957	81343157	+	589.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001024617, intron 1 of 24)	intron (NM_001024617, intron 1 of 24)	495.0	NM_001297593	234515.0	Mm.324468	NM_001024617	ENSMUSG00000037940	Inpp4b	E130107I17Rik	inositol polyphosphate-4-phosphatase, type II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-130161832-2	chr5	130161732	130161932	+	788.583313	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	-9987.0	NM_001199059	56715.0	Mm.288639	NM_019983	ENSMUSG00000025340	Rabgef1	Rab5ef|Rabex5|Rin2	RAB guanine nucleotide exchange factor (GEF) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32132806-4	chr2	32132704	32132904	+	940.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	G-rich|Low_complexity|Low_complexity	-18344.0	NM_172661	227723.0	Mm.25504	NM_172661	ENSMUSG00000039262	Prrc2b	5830434P21Rik|AI173903|Bat2l|Bat2l1|D430039P21|mKIAA0515	proline-rich coiled-coil 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-181126928-4	chr1	181126801	181127001	+	861.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026171, intron 10 of 22)	intron (NM_026171, intron 10 of 22)	17303.0	NM_026171	67459.0	Mm.263464	NM_026171	ENSMUSG00000026516	Nvl	1200009I24Rik	nuclear VCP-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-24346500-3	chr2	24346323	24346523	+	871.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039701, intron 1 of 3)	intron (NM_001039701, intron 1 of 3)	1052.0	NM_001039701	16181.0	Mm.882	NM_031167	ENSMUSG00000026981	Il1rn	F630041P17Rik|IL-1ra	interleukin 1 receptor antagonist	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-112258725-3	chr7	112258620	112258820	+	876.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001193305, intron 2 of 25)	intron (NM_001193305, intron 2 of 25)	32884.0	NM_001193305	320878.0	Mm.52312	NM_177282	ENSMUSG00000038244	Mical2	5330438E18Rik|9530064J02|MICAL-2|mKIAA0750	microtubule associated monooxygenase, calponin and LIM domain containing 2	protein-coding	0.533600995765883	0.889121379209169	0.711429469344941	0.945908216625935	1.27700261200269	0.555374263257514	1.09794496441057	0.54293902959544	0.823859406284098	0.621717446113957	1
Merged-chr6-43637397-4	chr6	43637285	43637485	+	848.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013861, intron 2 of 8)	intron (NM_013861, intron 2 of 8)	28893.0	NM_013861	29807.0	Mm.320979	NM_013861	ENSMUSG00000029735	Tpk1	-	thiamine pyrophosphokinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-136149199-2	chr4	136149099	136149299	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5377.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31377545-2	chr14	31377445	31377645	+	754.400024	f1_balb.idr|f1_c57bl6.idr	exon (NM_011894, exon 7 of 9)	exon (NM_011894, exon 7 of 9)	40132.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-93485473-4	chr1	93485357	93485557	+	865.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159719, intron 1 of 12)	intron (NM_001159719, intron 1 of 12)	6396.0	NM_001159719	18000.0	Mm.428652	NM_010891	ENSMUSG00000026276	Sept2	AW208991|Nedd-5|Nedd5|mKIAA0158	septin 2	protein-coding	4.1945509610999	3.27239592898652	4.00803089890346	2.68281300731931	4.15054314406344	4.10965460620212	1.71285623379937	3.18187388529376	-0.118516289863514	0.865250524964189	0.998431161219273
Merged-chr14-14843244-4	chr14	14843147	14843347	+	907.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195229, intron 7 of 34)	intron (NM_001195229, intron 7 of 34)	22432.0	NM_001195229	674895.0	Mm.317563	NM_001034865	ENSMUSG00000042567	Nek10	Gm282	NIMA (never in mitosis gene a)- related kinase 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-8913172-4	chr12	8912988	8913188	+	790.303589	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8219.0	NM_008640	17775.0	Mm.30071	NM_008640	ENSMUSG00000020585	Laptm4a	AA286466|LAPTM4|MTP|Mtrp|mKIAA0108	lysosomal-associated protein transmembrane 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-75860938-4	chr10	75860860	75861060	+	751.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010798)	promoter-TSS (NM_010798)	-710.0	NM_010798	17319.0	Mm.2326	NM_010798	ENSMUSG00000033307	Mif	GIF|Glif	macrophage migration inhibitory factor (glycosylation-inhibiting factor)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-166139003-2	chr1	166138903	166139103	+	627.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360925, intron 1 of 5)	intron (NM_001360925, intron 1 of 5)	8782.0	NM_001360925	59290.0	Mm.46357	NM_021610	ENSMUSG00000000544	Gpa33	2010310L10Rik|2210401D16Rik|BB116197|mA33	glycoprotein A33 (transmembrane)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-41239539-4	chr8	41239442	41239642	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023662)	promoter-TSS (NM_023662)	-217.0	NM_023662	18536.0	Mm.117896	NM_023662	ENSMUSG00000031592	Pcm1	2600002H09Rik|9430077F19Rik|C030044G17Rik	pericentriolar material 1	protein-coding	5.12044078945692	5.01431968993139	4.94417437704896	5.7860311715064	5.31483981978767	5.36827731928033	5.73415637227768	5.98175556604108	0.415376495468376	0.17654486878983	0.646313670384576
Merged-chr3-8975063-1	chr3	8974963	8975163	+	588.0	f1_c57bl6.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	-10917.0	NM_001025261	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	2.76367696593728	2.21868814548102	2.14378652308456	2.97394384402539	2.32691584640979	1.39509323782597	2.29566141465601	1.77606402552708	-1.29527824233844	0.149036709876096	0.600718467909702
Merged-chr15-72806802-2	chr15	72806702	72806902	+	647.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_002864, exon 1 of 1)	non-coding (NR_002864, exon 1 of 1)	3522.0	NR_002864	353342.0	Mm.440245	NR_002864	ENSMUSG00000106847	Peg13	-	paternally expressed 13	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16463374-3	chr7	16463288	16463488	+	753.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008718, exon 6 of 12)	exon (NM_008718, exon 6 of 12)	10609.0	NM_026938	69094.0	Mm.29633	NM_026938	ENSMUSG00000019158	Tmem160	1810008O21Rik	transmembrane protein 160	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-118218899-2	chr14	118218799	118218999	+	807.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17333.0	NR_131969	105245869.0	Mm.460408	NR_131969	ENSMUSG00000090534	LOC105245869	-	uncharacterized LOC105245869	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118913234-4	chr9	118913137	118913337	+	993.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13299.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	4.56037795027134	4.25202879607274	4.29141223270728	3.47246983171974	4.15665877758	4.34397599766513	3.69894735738895	4.57229258789702	0.035529291214281	0.936599427924362	0.998431161219273
Merged-chr4-144929664-2	chr4	144929564	144929764	+	673.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36527.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88549990-2	chr3	88549890	88550090	+	652.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_031248, exon 4 of 4)	exon (NM_031248, exon 4 of 4)	-1711.0	NM_016899	53868.0	Mm.26994	NM_016899	ENSMUSG00000008601	Rab25	AV012978	RAB25, member RAS oncogene family	protein-coding	0.569071332464241	1.35420635080604	0.627104339147715	0.411737244658517	0.57457763891337	1.36919323442164	0.633188373186505	0.413159899104982	0.0397699412987535	0.980344337693538	0.998431161219273
Merged-chr9-45546625-2	chr9	45546525	45546725	+	708.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081270, intron 3 of 32)	intron (NM_001081270, intron 3 of 32)	-115393.0	NR_040732	74602.0	Mm.394117	NR_040732	ENSMUSG00000097074	4833428L15Rik	-	RIKEN cDNA 4833428L15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166714864-3	chr2	166714778	166714978	+	780.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1046.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-3309718-3	chr8	3309590	3309790	+	681.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR44B|LTR|ERVK	-30073.0	NM_001330056	16337.0	Mm.268003	NM_010568	ENSMUSG00000005534	Insr	4932439J01Rik|CD220|D630014A15Rik|IR|IR-A|IR-B	insulin receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-93365478-4	chr10	93365382	93365582	+	894.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29271.0	NR_038014	432488.0	Mm.32833	NR_038014		Gm17745	Gm3546	predicted gene, 17745	ncRNA	4.29617111655351	4.25710230103524	4.59867936220272	3.46350131707889	6.06992527443882	5.61467781614066	5.42949768829856	5.70036372742996	1.80080103958396	1.45559614375751e-07	1.21843552554437e-05
Merged-chr4-101328828-4	chr4	101328734	101328934	+	926.841675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18193.0	NR_029537	387143.0		NR_029537	ENSMUSG00000065451	Mir101a	Mirn101|Mirn101a|miR-101|mir-101a	microRNA 101a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-106438391-4	chr9	106438280	106438480	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001276442)	promoter-TSS (NM_001276442)	-144.0	NM_025371	109652.0	Mm.7165	NM_025371	ENSMUSG00000023262	Acy1	1110014J22Rik|Acy-1	aminoacylase 1	protein-coding	7.08642672192003	7.2538685107083	6.80409562142128	6.67445219017423	6.78994128064814	6.42893961303992	6.86745455070828	6.51901527774306	-0.324023873141065	0.0984248270660684	0.488110116480582
Merged-chr10-80664598-4	chr10	80664508	80664708	+	994.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_021462)	TTS (NM_021462)	-7537.0	NM_145361	208198.0	Mm.60720	NM_145361	ENSMUSG00000003344	Btbd2	2610037C03Rik|4930512K17Rik	BTB (POZ) domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46849059-4	chr8	46848914	46849114	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	109269.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-24149247-4	chr10	24149164	24149364	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358563)	promoter-TSS (NM_001358563)	-25.0	NM_001358563	53331.0	Mm.248042	NM_016797	ENSMUSG00000019998	Stx7	AI315064|AI317144|AW107239|Syn7	syntaxin 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-31168584-3	chr7	31168480	31168680	+	908.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_046062, intron 3 of 3)	intron (NR_046062, intron 3 of 3)	6222.0	NR_046062	100038516.0	Mm.387223	NR_046062	ENSMUSG00000100985	Gm10640	EG668322	predicted gene 10640	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-30620063-4	chr10	30619968	30620168	+	899.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1702.0	NM_025798	66847.0	Mm.46218	NM_025798	ENSMUSG00000019791	Hint3	0610010I17Rik|AV009015|HINT-3|HINT-4|HINT4	histidine triad nucleotide binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-38515418-4	chr15	38515306	38515506	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301688, intron 1 of 11)	intron (NM_001301688, intron 1 of 11)	3860.0	NM_001301688	54375.0	Mm.250214	NM_018745	ENSMUSG00000037458	Azin1	1700085L02Rik|AZI|Oazi|Oazin	antizyme inhibitor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-48328162-2	chr8	48328062	48328262	+	698.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011857, intron 11 of 28)	intron (NM_011857, intron 11 of 28)	218149.0	NM_001161515	320685.0	Mm.121549	NM_178788	ENSMUSG00000031562	Dctd	6030466N05Rik	dCMP deaminase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-108197313-4	chr6	108197212	108197412	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11729.0	NM_145937	58911.0	Mm.439876	NM_145937	ENSMUSG00000030101	Sumf1	AA543204|AI463102|AI851573|FGE	sulfatase modifying factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-16435456-2	chr15	16435356	16435556	+	667.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13B|LTR|ERVK	-342645.0	NM_009869	12565.0	Mm.439758	NM_009869	ENSMUSG00000025370	Cdh9	-	cadherin 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-76482842-4	chr11	76482779	76482979	+	893.783325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346670, intron 2 of 21)	intron (NM_001346670, intron 2 of 21)	11616.0	NM_001346670	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	4.62235464698183	4.45802460356405	3.59306857011823	4.99669372874356	4.47850916719671	3.28914810729462	4.10435738762028	4.60148346443249	-0.381231439751649	0.412592024301757	0.894783826796838
Merged-chr4-123745206-2	chr4	123745106	123745306	+	754.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023423, intron 1 of 4)	intron (NM_023423, intron 1 of 4)	5093.0	NM_023423	68050.0	Mm.27903	NM_023423	ENSMUSG00000023075	Akirin1	6330407G11Rik	akirin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124896570-1	chr6	124896470	124896670	+	649.0	f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-8370.0	NM_013488	12504.0	Mm.2209	NM_013488	ENSMUSG00000023274	Cd4	L3T4|Ly-4	CD4 antigen	protein-coding	2.34964594298216	2.65313849127359	1.16126559672642	2.31761364629708	2.02431384634673	1.46496025761596	1.16754553527946	2.01900981019817	-1.28596657110742	0.238049051188246	0.734596840575252
Merged-chr11-107482252-2	chr11	107482152	107482352	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025894, intron 1 of 10)	B3A|SINE|B2	2724.0	NM_025894	66997.0	Mm.491171	NM_025894	ENSMUSG00000020720	Psmd12	1500002F15Rik|AI480719|P55	proteasome (prosome, macropain) 26S subunit, non-ATPase, 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-67824865-2	chr18	67824765	67824965	+	590.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027556, intron 14 of 45)	intron (NM_027556, intron 14 of 45)	24758.0	NM_027556	70799.0	Mm.30857	NM_027556	ENSMUSG00000024542	Cep192	4631422C13Rik|D430014P18Rik	centrosomal protein 192	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43036667-2	chr4	43036567	43036767	+	602.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001253353, exon 3 of 9)	exon (NM_001253353, exon 3 of 9)	3634.0	NM_001253353	230088.0	Mm.260162	NM_172691	ENSMUSG00000036002	Fam214b	B230312A22Rik	family with sequence similarity 214, member B	protein-coding	-1.22315906685268	-1.19557143632602	-1.20673282037136	-0.55836125556573	-1.22265483704505	-1.19315271784257	-1.20420612767407	-1.21425999345206	-2.67891099987134	0.437057736398543	1
Merged-chr1-86505458-2	chr1	86505358	86505558	+	838.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21099.0	NR_153834	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-69094359-4	chr8	69094294	69094494	+	862.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007509, intron 1 of 13)	intron (NM_007509, intron 1 of 13)	-5172.0	NM_153054	110877.0	Mm.19301	NM_153054	ENSMUSG00000036330	Slc18a1	4832416I10Rik|Vat1|Vmat1	solute carrier family 18 (vesicular monoamine), member 1	protein-coding	2.85935043431288	4.94346000375387	3.13879370907008	3.90396713542949	4.0613636132577	5.0090636954274	2.88997978737137	3.47474651753674	0.166520362702234	0.791514685506596	0.998431161219273
Merged-chr3-136896456-3	chr3	136896341	136896541	+	858.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008913, intron 8 of 13)	intron (NM_008913, intron 8 of 13)	226375.0	NM_001293622	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-40764226-4	chr9	40764119	40764319	+	934.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133733, intron 2 of 6)	intron (NM_133733, intron 2 of 6)	-37054.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	3.40969342854319	2.86595993442236	2.1220274441216	3.00549209822933	3.89281822148103	3.40712966629214	2.65565147246773	2.4248349986665	0.509891046531916	0.472422042853518	0.926125823511231
Merged-chr3-96233161-2	chr3	96233061	96233261	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5966.0	NM_054045	97114.0	Mm.358797	NM_054045	ENSMUSG00000081058	Hist2h3c2	H3-614|H3.2-614|Hist2h3c2-ps|Hist2h3ca1|M32461	histone cluster 2, H3c2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-57729598-3	chr14	57729476	57729676	+	923.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153382, intron 1 of 1)	intron (NM_153382, intron 1 of 1)	4842.0	NM_153382	50523.0	Mm.347899	NM_015771	ENSMUSG00000021959	Lats2	4932411G09Rik|AV277261|AW228608	large tumor suppressor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-53589529-2	chr6	53589431	53589631	+	677.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172728, intron 1 of 6)	intron (NM_172728, intron 1 of 6)	16157.0	NM_172728	231991.0	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	2.20556916183624	1.1567247943983	2.00702123918078	2.05753018461474	2.49453597786398	1.16219503252086	2.02357745123097	1.34538192879026	-0.0823067110532223	0.9423549826627	0.998431161219273
Merged-chr8-127439944-4	chr8	127439888	127440088	+	969.125	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033620, intron 20 of 24)	intron (NM_033620, intron 20 of 24)	140336.0	NM_001013580	93742.0	Mm.299254	NM_033620	ENSMUSG00000025812	Pard3	AA960621|AI256638|Asip|D8Ertd580e|Par-3|Par3|Pard-3|Pard3a|Phip	par-3 family cell polarity regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-92293187-2	chr6	92293090	92293290	+	950.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-48540.0	NM_009426	22044.0	Mm.1363	NM_009426	ENSMUSG00000005892	Trh	Pro-TRH|Trf	thyrotropin releasing hormone	protein-coding	-1.3681463318974	-1.33624156493372	-1.34650167276047	-0.80669348975676	-1.36769697821496	-1.33401815676661	-1.34417900924365	-1.3534210303531	-2.3580830592467	0.49586638340111	1
Merged-chr9-107743309-2	chr9	107743208	107743408	+	621.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_153190, intron 21 of 23)	intron (NR_153190, intron 21 of 23)	27694.0	NM_148930	83486.0	Mm.259197	NM_148930	ENSMUSG00000032580	Rbm5	D030069N10Rik	RNA binding motif protein 5	protein-coding	1.22070349234849	1.08248456878656	0.535480237393594	0.527709693616839	1.31491874190305	0.547690451534585	1.16938658881767	0.5290720112596	0.278870195099351	0.871373204228078	0.998431161219273
Merged-chr17-87540114-2	chr17	87540014	87540214	+	980.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-93179.0	NM_007589	12314.0	Mm.329243	NM_007589	ENSMUSG00000036438	Calm2	1500001E21Rik|AL024017|Cam2|CamC	calmodulin 2	protein-coding	0.727667042399676	2.21209660324898	0.769345742036808	1.3313419775944	1.6108844615751	1.85466122143844	0.773646505364014	0.988656380804683	-0.14108269758645	0.920798071558006	0.998431161219273
Merged-chr17-33915388-1	chr17	33915288	33915488	+	552.0	f1_c57bl6.idr	promoter-TSS (NM_020625)	promoter-TSS (NM_020625)	-788.0	NM_020625	81630.0	Mm.482096	NM_020625	ENSMUSG00000051390	Zbtb22	1110008J20Rik|AI265210|AI415166|Bing1|Zfp297	zinc finger and BTB domain containing 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55760315-4	chr14	55760224	55760424	+	877.8583369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPEY4_LTR|LTR|ERVK	-1104.0	NM_020490	57260.0	Mm.159670	NM_020490	ENSMUSG00000040432	Ltb4r2	5830462O07Rik|BLT2|LTB4-R 2|LTB4-R-2|LTB4-R2	leukotriene B4 receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-3477679-2	chr11	3477579	3477779	+	888.333374	f1_balb.idr|f1_c57bl6.idr	intron (NR_028317, intron 2 of 3)	intron (NR_028317, intron 2 of 3)	-10548.0	NM_172791	237625.0	Mm.100476	NM_172791	ENSMUSG00000034579	Pla2g3	-	phospholipase A2, group III	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-144980224-3	chr4	144980096	144980296	+	734.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276465, intron 68 of 69)	intron (NM_001276465, intron 68 of 69)	87059.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70555790-1	chr14	70555690	70555890	+	802.0	f0_balb.idr	intron (NM_021877, intron 2 of 19)	intron (NM_021877, intron 2 of 19)	1734.0	NM_021877	15460.0	Mm.7598	NM_021877	ENSMUSG00000022096	Hr	ALUNC|AU|N|ba|bldy|hr|rh|rh-bmh|rhino	hairless	protein-coding	1.50467256795984	1.85115729640231	2.06171542482949	1.39018672473323	2.42436078898689	1.21412677845376	2.1936698752605	2.47863008778185	1.18599468732472	0.252707337899689	0.750119406264342
Merged-chr6-125074151-3	chr6	125074061	125074261	+	639.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163268, intron 1 of 1)	intron (NM_001163268, intron 1 of 1)	2884.0	NM_001163268	381810.0	Mm.333386	NM_001163268	ENSMUSG00000067714	Lpar5	GPR93|Gm1072|Gpr92|LPA5	lysophosphatidic acid receptor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124093841-2	chr5	124093741	124093941	+	711.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_019875, intron 1 of 11)	intron (NM_019875, intron 1 of 11)	1957.0	NM_019875	56325.0	Mm.254839	NM_019875	ENSMUSG00000029408	Abcb9	TAPL|mKIAA1520	ATP-binding cassette, sub-family B (MDR/TAP), member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-113595663-2	chr13	113595563	113595763	+	988.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_130796, intron 1 of 1)	intron (NM_130796, intron 1 of 1)	22901.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-4251490-1	chr8	4251390	4251590	+	550.0	f1_balb.idr	TTS (NM_001195258)	TTS (NM_001195258)	-1612.0	NM_133968	102209.0	Mm.28452	NM_133968	ENSMUSG00000011837	Snapc2	0610007H10Rik|AU015675	small nuclear RNA activating complex, polypeptide 2	protein-coding	0.0821788018973367	-0.0442079977833916	-0.0493836694331695	0.571331942658913	0.0863334600166553	-0.0430411024589517	-0.0482422621091729	0.579089258744849	0.0306267038516608	0.988625781453858	1
Merged-chr18-84313715-3	chr18	84313620	84313820	+	876.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033341, intron 8 of 8)	intron (NM_001033341, intron 8 of 8)	225562.0	NM_146090	225791.0	Mm.147052	NM_146090	ENSMUSG00000049090	Zadh2	C530046K17Rik|PTGR-3|Pthr3	zinc binding alcohol dehydrogenase, domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-17890272-4	chr17	17890154	17890354	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008039, intron 1 of 1)	intron (NM_008039, intron 1 of 1)	2430.0	NM_008039	14289.0	Mm.378918	NM_008039	ENSMUSG00000052270	Fpr2	E330010I07Rik|Fpr-rs2	formyl peptide receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-39614761-2	chr4	39614661	39614861	+	631.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	164468.0	NM_001081095	75471.0	Mm.23522	NM_001081095	ENSMUSG00000028287	1700009N14Rik	AI429145	RIKEN cDNA 1700009N14 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-96896226-3	chr5	96896116	96896316	+	788.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25056.0	NR_131152	666266.0	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	-2.18138529563533	-2.15523716995652	-2.1631445789866	-2.16963996020037	-2.05513010215571	-2.15352360143315	-2.16135451490766	-2.16847729006863	0.759018020146679	0.829933115115583	1
Merged-chr13-91804640-2	chr13	91804540	91804740	+	588.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145453, intron 2 of 5)	B1F2|SINE|Alu	3056.0	NM_145453	69085.0	Mm.52356	NM_145453	ENSMUSG00000021621	Zcchc9	1810019C21Rik	zinc finger, CCHC domain containing 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-94350934-2	chr11	94350834	94351034	+	669.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029600, intron 29 of 30)	intron (NM_029600, intron 29 of 30)	22933.0	NM_146024	71452.0	Mm.141054	NM_027799	ENSMUSG00000020864	Ankrd40	1110011C06Rik|5530600A18Rik|Gcap15	ankyrin repeat domain 40	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-144337435-4	chr2	144337334	144337534	+	951.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	-5354.0	NM_026924	107586.0	Mm.252750	NM_026924	ENSMUSG00000037279	Ovol2	1700108N11Rik|1810007D21Rik|M-OVO|M-OVO-A|M-OVO-B|MOVO|Ovo2|Zfp339|movo2	ovo like zinc finger 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3695725-4	chr4	3695636	3695836	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 1 of 12)	MTEb|LTR|ERVL-MaLR	17615.0	NM_010747	17096.0	Mm.317331	NM_010747	ENSMUSG00000042228	Lyn	AA407514|Hck-2|p53Lyn|p56Lyn	LYN proto-oncogene, Src family tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-148041118-4	chr4	148041034	148041234	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161798)	promoter-TSS (NM_001161798)	-55.0	NR_027809	17769.0	Mm.89959	NM_010840	ENSMUSG00000029009	Mthfr	AI323986	methylenetetrahydrofolate reductase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-91460963-4	chr13	91460844	91461044	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024186)	promoter-TSS (NM_024186)	-153.0	NM_024272	66970.0	Mm.343095	NM_024186	ENSMUSG00000003992	Ssbp2	1500004K09Rik|2310079I02Rik|9330163K02Rik|A830008M03Rik|AU067692|AW558684|Hspc116|SSDP2	single-stranded DNA binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35059788-4	chr17	35059688	35059888	+	913.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016765, intron 1 of 6)	intron (NM_016765, intron 1 of 6)	753.0	NM_016765	51793.0	Mm.1457	NM_016765	ENSMUSG00000007039	Ddah2	1110003M04Rik|AU019324|AW413173|DDAH-2|DDAHII|Ddah|G6a|NG30	dimethylarginine dimethylaminohydrolase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-125176538-1	chr8	125176438	125176638	+	553.5	f0_balb.idr	intron (NM_174854, intron 9 of 12)	intron (NM_174854, intron 9 of 12)	122343.0	NM_174854	244667.0	Mm.233504	NM_170596	ENSMUSG00000043051	Disc1	-	disrupted in schizophrenia 1	protein-coding	1.69429633995364	1.93084312884333	1.14850025127477	1.11731532922614	2.49982610101287	2.99443702900157	1.67858590580946	3.2169003727082	2.88632597230876	0.00472801647305145	0.0641705222213476
Merged-chr12-85392589-2	chr12	85392489	85392689	+	805.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17872.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-65868696-2	chr5	65868596	65868796	+	887.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081105, intron 1 of 2)	intron (NM_001081105, intron 1 of 2)	5127.0	NM_001081105	74734.0	Mm.20323	NM_001081105	ENSMUSG00000029204	Rhoh	5830400A04Rik|AU019774|Arhh	ras homolog family member H	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-117428018-3	chr6	117427920	117428120	+	848.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-67215.0	NR_152214	100126203.0	Mm.217172	NR_152214		6820426E19Rik	Gm43983	RIKEN cDNA 6820426E19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-59036948-3	chr19	59036859	59037059	+	961.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114312, intron 5 of 16)	intron (NM_001114312, intron 5 of 16)	39110.0	NM_175172	71653.0	Mm.37338	NM_175172	ENSMUSG00000041362	Shtn1	4930506M07Rik|Shootin1|mKIAA1598	shootin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-55470628-8	chr11	55470489	55470689	+	990.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013716, intron 1 of 11)	intron (NM_013716, intron 1 of 11)	837.0	NM_013716	27041.0	Mm.39631	NM_013716	ENSMUSG00000018583	G3bp1	AI849976|B430204O07|C87777|G3bp|mKIAA4115	GTPase activating protein (SH3 domain) binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-80176020-4	chr11	80175929	80176129	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172133, intron 8 of 10)	intron (NM_172133, intron 8 of 10)	-7843.0	NM_028019	71956.0	Mm.22985	NM_028019	ENSMUSG00000020707	Rnf135	0610037N03Rik|2410006N06Rik	ring finger protein 135	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88058414-4	chr3	88058304	88058504	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144897)	promoter-TSS (NM_144897)	91.0	NM_144897	246703.0	Mm.205996	NM_144897	ENSMUSG00000028070	Naxe	AA087124|AI-BP|AIBP|Apoa1bp|Apoa1ip|ESTM37	NAD(P)HX epimerase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-35589671-2	chr2	35589571	35589771	+	669.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290637, intron 1 of 16)	intron (NM_001290637, intron 1 of 16)	6831.0	NM_001290637	69601.0	Mm.29629	NM_001001602	ENSMUSG00000026883	Dab2ip	2310011D08Rik|AI480459|Aip1|mKIAA1743	disabled 2 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-13502494-2	chr10	13502394	13502594	+	820.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025799, intron 1 of 6)	intron (NM_025799, intron 1 of 6)	1466.0	NM_025799	66848.0	Mm.26625	NM_025799	ENSMUSG00000019810	Fuca2	0610025O11Rik|5530401P20Rik	fucosidase, alpha-L- 2, plasma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-55450561-4	chr12	55450469	55450669	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR33|LTR|ERVL	42078.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97857905-4	chr6	97857788	97857988	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113198, intron 1 of 9)	intron (NM_001113198, intron 1 of 9)	50830.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34644726-4	chr17	34644636	34644836	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019873)	promoter-TSS (NM_019873)	-147.0	NM_019873	56299.0	Mm.10025	NM_019873	ENSMUSG00000033739	Fkbpl	DIR1|NG7|Ppiase-X|Wisp39	FK506 binding protein-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-95765182-2	chr13	95765082	95765282	+	786.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027711, intron 2 of 35)	intron (NM_027711, intron 2 of 35)	68262.0	NM_010170	14064.0	Mm.440952	NM_010170	ENSMUSG00000021675	F2rl2	F730031A08|PAR3	coagulation factor II (thrombin) receptor-like 2	protein-coding	-0.0743572047424605	0.919411496189866	0.134084472269412	-0.0660118918888143	0.0893993419835275	0.340155101321788	-0.0596023480279072	-0.0651383617638399	-1.5364464141248	0.46666867669923	1
Merged-chr16-19768248-3	chr16	19768144	19768344	+	992.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159408, intron 4 of 4)	intron (NM_001159408, intron 4 of 4)	8010.0	NM_001159407	108105.0	Mm.33935	NM_054052	ENSMUSG00000022686	B3gnt5	beta3GnT5	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-31137691-2	chr3	31137591	31137791	+	788.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12229.0	NM_008770	18417.0	Mm.4425	NM_008770	ENSMUSG00000037625	Cldn11	Claudin-11|Claudin11|Osp|Otm	claudin 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-50553785-4	chr9	50553666	50553866	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357222)	promoter-TSS (NM_001357222)	-104.0	NM_001359610	170752.0	Mm.390149	NM_133217	ENSMUSG00000032066	Bco2	B-diox-II|Bcdo2|Bcmo2|CMO2	beta-carotene oxygenase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129300666-1	chr2	129300566	129300766	+	635.0	f0_c57.idr	3' UTR (NM_010554, exon 7 of 7)	3' UTR (NM_010554, exon 7 of 7)	3296.0	NR_040371	100503468.0	Mm.446943	NR_040371	ENSMUSG00000085498	Gm14023	-	predicted gene 14023	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-73753014-4	chr18	73752914	73753114	+	897.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053255, intron 1 of 3)	PB1D10|SINE|Alu	1465.0	NM_053255	114615.0	Mm.50642	NM_053255	ENSMUSG00000036941	Elac1	2610018O07Rik|8430417G19Rik	elaC ribonuclease Z 1	protein-coding	3.50543788413878	3.87618697283155	3.34015552932916	3.62681437148667	3.75539312225649	5.87991422450887	4.48973360596233	4.88635100000621	1.7611096150615	0.000424492172391965	0.00981951880017764
Merged-chr13-52235742-2	chr13	52235642	52235842	+	661.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	139001.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44396213-2	chr9	44396113	44396313	+	831.583374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001293630)	promoter-TSS (NM_001293630)	-714.0	NM_001293631	14385.0	Mm.30087	NM_008063	ENSMUSG00000032114	Slc37a4	100043178|G6PT|G6pt1|GSD-1b|mG6PT	solute carrier family 37 (glucose-6-phosphate transporter), member 4	protein-coding	1.3211478783989	1.84687142047422	2.17487836453751	2.73456678869314	1.79194614619381	2.01564267155302	1.17533934307205	2.00988707903787	-0.88228612271092	0.400325552061004	0.885176145862419
Merged-chr13-91636993-4	chr13	91636910	91637110	+	936.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360776, intron 4 of 15)	intron (NM_001360776, intron 4 of 15)	-104511.0	NM_028790	74156.0	Mm.275963	NM_028790	ENSMUSG00000021620	Acot12	1300004O04Rik|4930449F15Rik|AV027244|Cach|mCACH-1	acyl-CoA thioesterase 12	protein-coding	4.31856902438936	3.6964662273237	5.60652659140932	3.8898977807104	5.67620793194612	4.89526203285937	4.43864880699309	5.21818018387319	0.63579901582402	0.168012062686557	0.634043765915062
Merged-chr15-59951375-2	chr15	59951275	59951475	+	844.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	65243.0	NM_027668	71088.0	Mm.425950	NM_027668	ENSMUSG00000071749	4933412E24Rik	-	RIKEN cDNA 4933412E24 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-30114637-2	chr5	30114537	30114737	+	886.625	f1_balb.idr|f1_c57bl6.idr	exon (NM_001167879, exon 4 of 6)	exon (NM_001167879, exon 4 of 6)	-8551.0	NM_001256263	433868.0	Mm.450696	NM_001256263	ENSMUSG00000086815	3110082J24Rik	-	RIKEN cDNA 3110082J24 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-98805246-4	chr10	98805146	98805346	+	967.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-109396.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-104334047-4	chr8	104333958	104334158	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-6536.0	NM_024217	68119.0	Mm.390108	NM_024217	ENSMUSG00000031875	Cmtm3	9430096L06Rik|AI413895|BNAS2|Cklfsf3	CKLF-like MARVEL transmembrane domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-95823008-2	chr15	95822908	95823108	+	884.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 1 of 19)	intron (NM_175344, intron 1 of 19)	7064.0	NR_155277	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171681121-3	chr1	171680903	171681103	+	663.1777950000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360767)	promoter-TSS (NM_001360767)	-989.0	NM_007649	12506.0	Mm.1738	NM_007649	ENSMUSG00000015355	Cd48	AI449234|AW610730|BCM1|BLAST|BLAST-1|BLAST1|Bcm-1|MEM-102|SLAMF2|Sgp-60	CD48 antigen	protein-coding	-0.0546556115419927	0.540993517765675	0.262401223195932	0.105692861382115	0.202003303928677	-0.0395741387068086	-0.0442178074021523	0.108442340991555	-1.5021963318177	0.466238376002679	1
Merged-chr13-113436462-4	chr13	113436353	113436553	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	66391.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-10970147-2	chr16	10970047	10970247	+	780.6999509999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_019980, intron 1 of 3)	B2_Mm2|SINE|B2	22974.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3890025-2	chr12	3889925	3890125	+	661.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007872, intron 6 of 22)	intron (NM_007872, intron 6 of 22)	-1719.0	NM_153743	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24251446-4	chr17	24251343	24251543	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007634)	promoter-TSS (NM_007634)	-34.0	NM_007634	12449.0	Mm.77695	NM_007634	ENSMUSG00000072082	Ccnf	CycF|Fbxo1	cyclin F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-87372182-3	chr3	87372154	87372354	+	750.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	-4133.0	NM_001310545	229499.0	Mm.255203	NM_153090	ENSMUSG00000059994	Fcrl1	A230020G22Rik|Bxmas1|Bxmh1|Bxmh1b|Fcrh1|Fcrh1l|Fcrh1s|Ifgp1	Fc receptor-like 1	protein-coding	1.25779199687957	1.79129098265174	0.833701058929447	1.45458911035293	0.984900291308192	1.80670857346079	0.836955975859229	1.33708005944349	-0.283591275442273	0.832264711527533	0.998431161219273
Merged-chr2-142865615-1	chr2	142865515	142865715	+	566.0	f0_balb.idr	intron (NM_001355123, intron 1 of 26)	intron (NM_001355123, intron 1 of 26)	35849.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-61068590-3	chr18	61068488	61068688	+	896.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008809, intron 9 of 22)	intron (NM_008809, intron 9 of 22)	23438.0	NM_008809	18596.0	Mm.4146	NM_008809	ENSMUSG00000024620	Pdgfrb	AI528809|CD140b|PDGFR-1|Pdgfr	platelet derived growth factor receptor, beta polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-119425825-4	chr8	119425714	119425914	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11348.0	NM_027950	71839.0	Mm.272357	NM_027950	ENSMUSG00000074063	Osgin1	1700012B18Rik|Okl38	oxidative stress induced growth inhibitor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-5320314-4	chr18	5320210	5320410	+	988.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360447, intron 1 of 4)	L1M4b|LINE|L1	14129.0	NM_178722	240186.0	Mm.118257	NM_178722	ENSMUSG00000050945	Zfp438	9430031G09|9430091M14Rik|B830013J05Rik	zinc finger protein 438	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-34075491-2	chr13	34075391	34075591	+	703.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_009450, exon 4 of 4)	exon (NM_009450, exon 4 of 4)	2517.0	NM_009450	22151.0	Mm.422827	NM_009450	ENSMUSG00000058672	Tubb2a	M(beta)2|Tubb2	tubulin, beta 2A class IIA	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-92609152-2	chr2	92609052	92609252	+	677.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356552, intron 2 of 3)	intron (NM_001356552, intron 2 of 3)	8035.0	NM_001356553	76969.0	Mm.38021	NM_023850	ENSMUSG00000027221	Chst1	2610008E20Rik|AW125896|C6ST|GST-1|Gst1|KS6ST|KSGAL6ST|KSST	carbohydrate (keratan sulfate Gal-6) sulfotransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-69513386-4	chr12	69513270	69513470	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37820.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-105334957-2	chr11	105334857	105335057	+	690.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008626, intron 9 of 29)	B1_Mus2|SINE|Alu	42311.0	NM_008626	17534.0	Mm.235616	NM_008626	ENSMUSG00000020695	Mrc2	Endo180|mKIAA0709|uPARAP	mannose receptor, C type 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-6711266-4	chr2	6711164	6711364	+	921.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110232, intron 4 of 15)	L2|LINE|L2	10398.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-135147539-4	chr1	135147430	135147630	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026823, intron 1 of 6)	CpG	696.0	NM_026823	68724.0	Mm.174998	NM_026823	ENSMUSG00000026426	Arl8a	1110033P22Rik|Arl10b|gie2	ADP-ribosylation factor-like 8A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-115793508-4	chr3	115793447	115793647	+	942.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-78492.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-84317960-4	chr1	84317880	84318080	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33335.0	NM_001003948	98496.0	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4|P-CLI1	phosphotyrosine interaction domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-62662258-4	chr4	62662164	62662364	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134257, intron 10 of 15)	intron (NM_134257, intron 10 of 15)	-11710.0	NM_001310706	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-90772587-2	chr15	90772487	90772687	+	688.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-93199.0	NM_001357979	66871.0	Mm.290991	NM_025815	ENSMUSG00000052560	Cpne8	1200003E11Rik|1500031E20Rik	copine VIII	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3264578-4	chr12	3264470	3264670	+	928.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016676, intron 2 of 5)	intron (NM_016676, intron 2 of 5)	28779.0	NR_015551	74173.0	Mm.309774	NM_028796	ENSMUSG00000079179	Rab10os	1700012B15Rik|1810036A22Rik	RAB10, member RAS oncogene family, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-31492634-3	chr17	31492544	31492744	+	824.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR41|LTR|ERVL	19843.0	NM_021322	57773.0	Mm.143771	NM_021322	ENSMUSG00000024037	Wdr4	AI415180|AI448349|D530049K22Rik|Wh	WD repeat domain 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-125314258-4	chr10	125314161	125314361	+	947.5750119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358496, intron 1 of 5)	intron (NM_001358496, intron 1 of 5)	-5445.0	NM_001358915	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-128829963-3	chr6	128829884	128830084	+	706.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3669.0	NM_030599	80782.0	Mm.6180	NM_030599	ENSMUSG00000079298	Klrb1b	Klrb1d|Ly55b|Ly55d|NKR-P1B|NKR-P1D|Nkrp1-b|Nkrp1b|Nkrp1d|ly-55b|ly-55d	killer cell lectin-like receptor subfamily B member 1B	protein-coding	-0.444625619854891	-0.692463809513052	-0.14289512517372	-0.697972119679026	-0.560176605561735	-0.691760258584148	-0.694891968605246	-0.697554345884745	-2.24069052871221	0.41123471797803	1
Merged-chr19-11950068-4	chr19	11949963	11950163	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-15781.0	NM_001033174	76303.0	Mm.291279	NM_001033174	ENSMUSG00000024687	Osbp	1110018F06Rik|AW559088|mKIAA4220	oxysterol binding protein	protein-coding	4.35080341620851	4.50468243340192	3.09504777195447	4.25145906210112	4.42161081411205	3.24034277540948	4.58470871285254	3.92885450362624	-0.00841419867046102	0.986581308856416	0.998431161219273
Merged-chr8-128204980-1	chr8	128204880	128205080	+	592.0	f0_balb.idr	Intergenic	Intergenic	73245.0	NR_105822	102465212.0		NR_105822	ENSMUSG00000099326	Mir21c	Gm28013|mmu-mir-21c	microRNA 21c	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-124800565-2	chr14	124800465	124800665	+	873.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-123438.0	NM_207667	14169.0	Mm.206362	NM_010201	ENSMUSG00000025551	Fgf14	FHF-4|Fhf4|Tg(tetO-MAPT*P301L)4510Kha|mFHF-4(1B)	fibroblast growth factor 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-80046792-4	chr12	80046698	80046898	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	66215.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98029696-2	chr11	98029596	98029796	+	767.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009078, intron 4 of 5)	intron (NM_009078, intron 4 of 5)	2772.0	NM_009078	19921.0	Mm.10247	NM_009078	ENSMUSG00000017404	Rpl19	-	ribosomal protein L19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-105167251-2	chr1	105167151	105167351	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-188756.0	NR_151539	100504568.0	Mm.321153	NR_151538	ENSMUSG00000097482	Gm17634	-	predicted gene, 17634	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-152108143-2	chr4	152108043	152108243	+	622.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285999, intron 13 of 20)	intron (NM_001285999, intron 13 of 20)	-7791.0	NM_001291010	85030.0	Mm.101198	NM_033042	ENSMUSG00000024793	Tnfrsf25	APO-3|DDR3|DR3|LARD|TR3|TRAMP|Tnfrsf12|WSL-1|WSL-LR|Wsl	tumor necrosis factor receptor superfamily, member 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-39319421-3	chr18	39319295	39319495	+	698.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361073, intron 20 of 21)	intron (NM_001361073, intron 20 of 21)	167850.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	1.19261220487143	1.26975460266164	0.616482121183365	1.1732004989002	1.11120162153802	1.00779792778384	0.618615005271179	0.610303074587645	-1.12150057915664	0.475994180499599	0.927406040011522
Merged-chr8-46841790-2	chr8	46841690	46841890	+	946.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_152560, intron 6 of 7)	intron (NR_152560, intron 6 of 7)	102045.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-24487844-4	chr16	24487751	24487951	+	906.724976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 3 of 12)	intron (NM_178665, intron 3 of 12)	39760.0	NM_001145952	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-120870308-2	chr9	120870208	120870408	+	642.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44942.0	NR_040742	76402.0	Mm.436588	NR_040742	ENSMUSG00000100146	1700020M21Rik	-	RIKEN cDNA 1700020M21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-64308727-4	chr1	64308639	64308839	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-187350.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-156939866-2	chr1	156939757	156939957	+	899.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159965)	promoter-TSS (NM_001159965)	-231.0	NM_001357391	78255.0	Mm.28376	NM_023884	ENSMUSG00000026594	Ralgps2	1810020P17Rik|2210408F11Rik|4921528G01Rik|9130014M22Rik|AU043409|AW046161	Ral GEF with PH domain and SH3 binding motif 2	protein-coding	1.65026070478601	0.860294989303352	0.845957972948333	1.56499345620788	1.48922204090536	0.863491631834038	1.73462750859662	1.340445368178	0.365113763912285	0.793955425010717	0.998431161219273
Merged-chr17-26236595-2	chr17	26236495	26236695	+	547.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001206335, intron 1 of 12)	B1_Mm|SINE|Alu	7647.0	NM_207217	106581.0	Mm.28844	NM_207217	ENSMUSG00000024187	Fam234a	Itfg3	family with sequence similarity 234, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-27346194-2	chr3	27346094	27346294	+	588.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-25157.0	NM_177330	208188.0	Mm.194721	NM_177330	ENSMUSG00000051136	Ghsr	C530020I22Rik|GHRP|GHS-R|Ghsr1a	growth hormone secretagogue receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-73137623-7	chr11	73137450	73137650	+	747.714294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010353, exon 1 of 1)	exon (NM_010353, exon 1 of 1)	744.0	NM_010353	14841.0	Mm.42045	NM_010353	ENSMUSG00000050107	Haspin	Gsg2	histone H3 associated protein kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107540905-1	chr9	107540805	107541005	+	605.0	f1_balb.idr	intron (NM_001357291, intron 2 of 2)	intron (NM_001357291, intron 2 of 2)	960.0	NM_019720	56368.0	Mm.24833	NM_019720	ENSMUSG00000037190	Cyb561d2	AW049681|Tsp10	cytochrome b-561 domain containing 2	protein-coding	-0.632973229346855	-0.621993181602012	-0.625593153155619	-0.62836886800414	-0.632288588996241	-0.114837605794168	-0.624799371546395	-0.0840103519032747	3.37462591379059	0.228834980983209	1
Merged-chr5-52132285-2	chr5	52132185	52132385	+	897.875	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3732.0	NR_105845	102466648.0		NR_105845	ENSMUSG00000098726	Mir6417	Gm27334|mmu-mir-6417	microRNA 6417	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-155473292-2	chr2	155473192	155473392	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32509.0	NM_019825	56406.0	Mm.27592	NM_019825	ENSMUSG00000038369	Ncoa6	AIB3|ASC-2|ASC2|NRC|Ncoa7|PRIP|RAP250|mKIAA0181	nuclear receptor coactivator 6	protein-coding	-0.294083384950798	-0.277963382818132	0.430175288204581	-0.287290034214969	-0.293070061983337	-0.276782190008417	0.44311158986884	-0.286577643912737	0.0410571026119648	0.987250810110592	1
Merged-chr5-72254493-2	chr5	72254393	72254593	+	911.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_003966, intron 9 of 22)	intron (NR_003966, intron 9 of 22)	51150.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-35707944-4	chr18	35707839	35708039	+	998.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4795.0	NM_029669	76594.0	Mm.108596	NM_029669	ENSMUSG00000024350	Dnajc18	2700075B01Rik|AU041129	DnaJ heat shock protein family (Hsp40) member C18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-9015904-2	chr4	9015804	9016004	+	857.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-253389.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180229958-2	chr1	180229858	180230058	+	652.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001128605, intron 7 of 10)	intron (NM_001128605, intron 7 of 10)	15992.0	NM_011183	19165.0	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-112327325-2	chr5	112327225	112327425	+	980.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_018783, intron 1 of 13)	B1_Mur4|SINE|Alu	956.0	NM_018783	54723.0	Mm.172947	NM_018783	ENSMUSG00000029345	Tfip11	2810002G02Rik|AF097181|AW046167|Srr1|TIP33|Tip39	tuftelin interacting protein 11	protein-coding	-1.8429182434137	-1.8129848525291	-1.82203695700074	-1.54461076807193	-1.84081697472045	-1.81102322372834	-1.81998775896484	-1.82814164409203	-1.43114970378833	0.684630132144154	1
Merged-chr11-29810541-4	chr11	29810436	29810636	+	907.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146016, intron 16 of 41)	intron (NM_146016, intron 16 of 41)	15132.0	NM_176829	216622.0	Mm.443260	NM_176829	ENSMUSG00000078157	4931440F15Rik	Fem1ab	RIKEN cDNA 4931440F15 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-36767514-2	chr5	36767414	36767614	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR73|LTR|ERV1	-18835.0	NM_133724	117197.0	Mm.46744	NM_133724	ENSMUSG00000060708	Bloc1s4	2610101N07Rik|Blos4|Cno	biogenesis of lysosomal organelles complex-1, subunit 4, cappuccino	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-119339145-2	chr9	119339066	119339266	+	798.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_010851, intron 1 of 5)	intron (NM_010851, intron 1 of 5)	874.0	NM_010851	17874.0	Mm.213003	NM_010851	ENSMUSG00000032508	Myd88	-	myeloid differentiation primary response gene 88	protein-coding	-1.50544769289475	-1.31986892053265	-1.4829655254078	-1.49097125517992	-1.50318532870116	-1.47110741517505	-1.48075922391153	-1.1828372067068	0.779740177943635	0.822736701503013	1
Merged-chr6-90666162-2	chr6	90666062	90666262	+	764.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356440, intron 12 of 13)	intron (NM_001356440, intron 12 of 13)	46916.0	NM_001037493	71699.0	Mm.272633	NM_027868	ENSMUSG00000030089	Slc41a3	1010001P06Rik|AI480742|SLC41A1-L2	solute carrier family 41, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-59233037-2	chr11	59232937	59233137	+	586.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4770.0	NM_007476	11840.0	Mm.371546	NM_007476	ENSMUSG00000048076	Arf1	-	ADP-ribosylation factor 1	protein-coding	-0.340943407086275	-0.140589740173152	-0.332704675689199	0.1823913520129	-0.340180554517656	-0.327762934114444	-0.331816474767363	0.189122643580728	-0.353161139678277	0.888168632139067	1
Merged-chr8-70765514-4	chr8	70765421	70765621	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023065, intron 1 of 7)	intron (NM_023065, intron 1 of 7)	1142.0	NM_023065	65972.0	Mm.30241	NM_023065		Ifi30	GILT|IP30	interferon gamma inducible protein 30	protein-coding	-1.33529739681439	-1.30591854857254	-1.3158428643115	-1.1678401991129	-0.950618823128122	-1.30376790795164	-1.31359621676301	-1.3225357656552	1.06732360251078	0.756380064897408	1
Merged-chr19-7016641-2	chr19	7016541	7016741	+	784.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001362399, intron 2 of 14)	intron (NM_001362399, intron 2 of 14)	2828.0	NM_153795	108101.0	Mm.157591	NM_153795	ENSMUSG00000024965	Fermt3	C79673|Kindlin3	fermitin family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167532220-2	chr2	167532120	167532320	+	998.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5975.0	NM_011427	20613.0	Mm.2093	NM_011427	ENSMUSG00000042821	Snai1	Sna|Sna1|Snail|Snail1	snail family zinc finger 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96498470-2	chr3	96498370	96498570	+	584.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	AT_rich|Low_complexity|Low_complexity	-26715.0	NM_027126	69585.0	Mm.171314	NM_027126	ENSMUSG00000038403	Hfe2	2310035L15Rik|5230400G09Rik|AI414844|AI789733|DL-M|HJV|Rgmc|hemojuvelin	hemochromatosis type 2 (juvenile)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72938089-4	chr6	72937979	72938179	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20153.0	NM_001039392	19240.0	Mm.3532	NM_025284	ENSMUSG00000079523	Tmsb10	Ptmb10|Tb10	thymosin, beta 10	protein-coding	3.19945817653549	2.52027983306123	2.27900757864807	2.5048245502053	2.88570890615242	3.03586345354977	2.93762485753483	3.10633350181488	0.57139517433518	0.407070872832868	0.891789957196972
Merged-chr7-30425464-2	chr7	30425364	30425564	+	885.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_172142, intron 4 of 10)	intron (NM_172142, intron 4 of 10)	2189.0	NM_172142	243910.0	Mm.386878	NM_172142	ENSMUSG00000036931	Nfkbid	I-kappa-B-delta|IkappaBNS|ikB-delta	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-9621382-3	chr4	9621328	9621528	+	898.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_133723, exon 5 of 5)	3' UTR (NM_133723, exon 5 of 5)	22289.0	NM_001177853	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	0.618480469308912	0.677795091400908	0.659081183520225	1.49896580394723	1.01480768341397	2.06262312110745	0.663264197288914	1.97687785444254	2.2085775547607	0.146413553288206	0.596422318658231
Merged-chr9-123985094-3	chr9	123984992	123985192	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-6684.0	NM_007718	12770.0	Mm.423532	NM_007718	ENSMUSG00000064039	Ccr1l1	Cmkbr1l1	chemokine (C-C motif) receptor 1-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116129344-2	chr11	116129244	116129444	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178802, intron 1 of 5)	intron (NM_178802, intron 1 of 5)	1784.0	NM_178802	338364.0	Mm.439976	NM_178802	ENSMUSG00000054517	Trim65	4732463G12Rik	tripartite motif-containing 65	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-39608854-5	chr15	39608710	39608910	+	988.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053271, intron 21 of 26)	Lx2A|LINE|L1	-50701.0	NM_001256384	116838.0	Mm.309296	NM_053271	ENSMUSG00000037386	Rims2	2810036I15Rik|AW048769|RIM2|Rab3ip2|Rim2(+40A)|Rim2(+44A)|Rim2(+4A)|Serg2|Syt3-rs|mKIAA0751	regulating synaptic membrane exocytosis 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-46957954-2	chr17	46957854	46958054	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146078, intron 26 of 46)	intron (NM_146078, intron 26 of 46)	47469.0	NM_008938	19133.0	Mm.291370	NM_008938	ENSMUSG00000023978	Prph2	AOFMD|AVMD|Nmf193|PRPH|RP7|Rd-2|Rd2|Rds|Tspan22|rds	peripherin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-31037970-2	chr6	31037870	31038070	+	560.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	24777.0	NR_029744	387222.0		NR_029744	ENSMUSG00000065610	Mir29a	Mirn29a|mir-29a|mmu-mir-29a	microRNA 29a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-89998269-2	chr18	89998169	89998369	+	797.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2A|LINE|L1	-229133.0	NM_001039173	623279.0	Mm.447164	NM_001039173	ENSMUSG00000073514	Dok6	Dok-6	docking protein 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-11549862-4	chr8	11549782	11549982	+	883.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359137, intron 2 of 14)	intron (NM_001359137, intron 2 of 14)	889.0	NM_024248	71941.0	Mm.196576	NM_024248	ENSMUSG00000056228	Cars2	2310051N18Rik|2410044A07Rik|D530030H10Rik|cysRS	cysteinyl-tRNA synthetase 2 (mitochondrial)(putative)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-141132587-1	chr6	141132487	141132687	+	665.0	f0_balb.idr	Intergenic	L1MD|LINE|L1	-116682.0	NM_018779	54611.0	Mm.103728	NM_018779	ENSMUSG00000041741	Pde3a	A930022O17Rik|C87899	phosphodiesterase 3A, cGMP inhibited	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-64435823-1	chr11	64435723	64435923	+	805.0	f1_c57bl6.idr	non-coding (NR_028445, exon 1 of 1)	non-coding (NR_028445, exon 1 of 1)	491.0	NM_178870	15478.0	Mm.340214	NM_178870	ENSMUSG00000047759	Hs3st3a1	3Ost3a|Hs3st3a	heparan sulfate (glucosamine) 3-O-sulfotransferase 3A1	protein-coding	1.63819693749953	1.44918233028966	2.7410908469493	2.37752532450875	1.78341788885039	1.45846375893767	1.93685233789668	1.57140786295916	-1.25028126542967	0.216681426507029	0.707538695710375
Merged-chr17-31073978-3	chr17	31073856	31074056	+	930.022217	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009593, intron 2 of 14)	intron (NM_009593, intron 2 of 14)	16262.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	0.454386512372344	0.534106031226647	1.40319511725174	0.489508089154774	0.459784859443974	2.00871459340532	2.58147140084963	0.493053360655911	2.75157681386564	0.386996295136771	0.876517644221684
Merged-chr16-96081541-4	chr16	96081426	96081626	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145125, intron 4 of 41)	intron (NM_145125, intron 4 of 41)	902.0	NM_001103179	93871.0	Mm.240871	NM_145125	ENSMUSG00000022914	Brwd1	5330419I02Rik|D530019K20Rik|G1-403-16|Wdr9|repro5	bromodomain and WD repeat domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135962641-4	chr5	135962529	135962729	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160366, intron 9 of 10)	CpG	11847.0	NM_001160366	109267.0	Mm.332750	NM_001160366	ENSMUSG00000029699	Ssc4d	C330016E03Rik|S4D-SRCRB|SRCRB-S4D|Srcrb4d	scavenger receptor cysteine rich family, 4 domains	protein-coding	5.5518535068482	4.98127913791581	5.17725577965744	5.48233270660073	5.25829293286506	3.80038100561107	5.54597150182025	5.50573141410048	-0.156692745600223	0.667049108113908	0.992549218580075
Merged-chr6-33859791-4	chr6	33859679	33859879	+	930.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009148, intron 13 of 17)	MLT1J|LTR|ERVL-MaLR	-169669.0	NM_028886	74354.0	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76332910-3	chr15	76332812	76333012	+	831.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010331, exon 6 of 12)	exon (NM_010331, exon 6 of 12)	1618.0	NM_010331	14731.0	Mm.5903	NM_010331	ENSMUSG00000022561	Gpaa1	C80044|mGAA1	GPI anchor attachment protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-116336371-4	chr7	116336259	116336459	+	961.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011083)	TTS (NM_011083)	-2169.0	NM_026533	68052.0	Mm.14798	NM_026533	ENSMUSG00000090862	Rps13	2700063M04Rik	ribosomal protein S13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-74954298-2	chr15	74954233	74954433	+	688.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164036)	promoter-TSS (NM_001164036)	-718.0	NM_001164039	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	-0.413392169273687	-0.658313957271306	-0.66142755941707	-0.663820363722743	-0.667187522485793	-0.46803510940727	-0.660742011724648	-0.145266871517102	1.48354261892743	0.59072243102987	1
Merged-chr16-33573434-2	chr16	33573334	33573534	+	802.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083902, intron 4 of 11)	intron (NM_001083902, intron 4 of 11)	54839.0	NM_001083902	171286.0	Mm.35253	NM_134251	ENSMUSG00000035506	Slc12a8	CCC9|E330020C02Rik	solute carrier family 12 (potassium/chloride transporters), member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-30658491-3	chr13	30658402	30658602	+	868.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1557.0	NM_001037955	105352.0	Mm.289646	NM_134068	ENSMUSG00000069255	Dusp22	JKAP|JSP1|LMW-DSP2|MKPX	dual specificity phosphatase 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-35066119-4	chr7	35066031	35066231	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9565.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-43303000-4	chr1	43302891	43303091	+	958.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-106230.0	NM_001289533	14200.0	Mm.6799	NM_010212	ENSMUSG00000008136	Fhl2	FHL-2|SLIM-3|SLIM3	four and a half LIM domains 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-59307030-2	chr2	59306930	59307130	+	718.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 6 of 20)	intron (NM_175464, intron 6 of 20)	79652.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120983088-2	chr11	120982988	120983188	+	946.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027874, intron 2 of 9)	intron (NM_027874, intron 2 of 9)	8245.0	NM_139059	104318.0	Mm.216227	NM_027874	ENSMUSG00000025162	Csnk1d	1200006A05Rik|AA409348|D930010H05Rik	casein kinase 1, delta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-88573492-4	chr5	88573406	88573606	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289774, intron 1 of 17)	intron (NM_001289774, intron 1 of 17)	8466.0	NM_001289775	52822.0	Mm.270469	NM_027530	ENSMUSG00000029291	Rufy3	2810428M05Rik|6330416M07Rik|AW455998|AW538594|D5Bwg0860e|Ripx|Rpipx	RUN and FYVE domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-87712218-3	chr16	87712124	87712324	+	762.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007520, intron 1 of 4)	intron (NM_007520, intron 1 of 4)	13270.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-156475622-6	chr2	156475498	156475698	+	716.633301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001006664)	promoter-TSS (NM_001006664)	64.0	NM_001006664	13821.0	Mm.20852	NM_013510	ENSMUSG00000027624	Epb41l1	4.1N|Epb4.1l1|NBL1|mKIAA0338	erythrocyte membrane protein band 4.1 like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56269984-2	chr17	56269884	56270084	+	768.833313	f1_balb.idr|f1_c57bl6.idr	exon (NM_174989, exon 2 of 2)	exon (NM_174989, exon 2 of 2)	6783.0	NM_174989	106759.0	Mm.203952	NM_174989	ENSMUSG00000047123	Ticam1	AW046014|AW547018|TICAM-1|TRIF	toll-like receptor adaptor molecule 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30292169-2	chr7	30291948	30292148	+	648.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360764, intron 1 of 13)	intron (NM_001360764, intron 1 of 13)	353.0	NM_001360764	76686.0	Mm.159258	NM_001081114	ENSMUSG00000013921	Clip3	1500005P14Rik|AI844915|Clipr-59	CAP-GLY domain containing linker protein 3	protein-coding	0.318436692870567	0.183820946991002	0.176399279265924	0.170635216459468	0.459965959990886	0.185486507818877	0.799690629799877	1.11298336339932	3.52416927615645	0.0712505744818864	1
Merged-chr11-80785992-2	chr11	80785892	80786092	+	562.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5967.0	NM_177390	338367.0	Mm.151948	NM_177390	ENSMUSG00000035441	Myo1d	9930104H07Rik|AW544947|D11Ertd9e|myosin-1d	myosin ID	protein-coding	-1.84297643846673	-1.8130099360596	-1.82207205372894	-1.6869274651563	-1.84087284540582	-1.81104613735712	-1.82002058892457	-1.6855950118199	0.037684011990387	0.991491645451152	1
Merged-chr17-73107403-4	chr17	73107295	73107495	+	897.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177968)	promoter-TSS (NM_001177968)	-590.0	NM_001177968	225010.0	Mm.329194	NM_001081071	ENSMUSG00000054469	Lclat1	AI181996|Agpat8|Alcat1|Gm91|Lycat	lysocardiolipin acyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-94538509-5	chr9	94538442	94538642	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033145)	promoter-TSS (NM_001033145)	-461.0	NM_001033145	68861.0	Mm.258746	NM_001033145	ENSMUSG00000045414	1190002N15Rik	GoPro49|HASF	RIKEN cDNA 1190002N15 gene	protein-coding	3.72724560956391	3.5646405295852	3.44437753605605	2.78365769825413	4.05404279856037	3.99135196138513	4.10957274632328	3.61054763823339	0.774779901122886	0.127193472503234	0.558045081579889
Merged-chr8-10910657-4	chr8	10910570	10910770	+	972.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10748.0	NR_102285	71624.0	Mm.139075	NR_102285	ENSMUSG00000109089	4833411C07Rik	-	RIKEN cDNA 4833411C07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99126479-7	chr15	99126362	99126562	+	979.761902	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_139140)	promoter-TSS (NM_139140)	-383.0	NM_139140	72572.0	Mm.276650	NM_139140	ENSMUSG00000051934	Spats2	2700012F11Rik|59kDa|Scr59|p59	spermatogenesis associated, serine-rich 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-120821602-3	chr6	120821544	120821744	+	676.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007510, intron 1 of 8)	B3|SINE|B2	1054.0	NM_007510	11973.0	Mm.29045	NM_007510	ENSMUSG00000019210	Atp6v1e1	2410029D23Rik|Atp6e|Atp6e2|Atp6v1e|D6Ertd385e|Vma4|p31	ATPase, H+ transporting, lysosomal V1 subunit E1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-73170554-2	chr14	73170454	73170654	+	805.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_134083, intron 10 of 14)	intron (NM_134083, intron 10 of 14)	27769.0	NR_033185	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-115330001-2	chr10	115329901	115330101	+	882.416626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	-14410.0	NM_024454	216344.0	Mm.21936	NM_024454	ENSMUSG00000020132	Rab21	9630024B22	RAB21, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-32431788-2	chr16	32431688	32431888	+	751.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163160, intron 1 of 8)	intron (NM_001163160, intron 1 of 8)	558.0	NM_001163160	13026.0	Mm.98775	NM_009981	ENSMUSG00000005615	Pcyt1a	CTalpha|Cctalpha|Ctpct|Cttalpha	phosphate cytidylyltransferase 1, choline, alpha isoform	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19066917-2	chr7	19066817	19067017	+	639.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_031255, intron 3 of 5)	intron (NM_031255, intron 3 of 5)	-9283.0	NM_010058	13401.0	Mm.2852	NM_010058	ENSMUSG00000030410	Dmwd	DMR-N9|Dm9	dystrophia myotonica-containing WD repeat motif	protein-coding	-0.289851946104314	-0.737899168765768	-0.740932179010924	-0.743264539078787	-0.280173431323445	-0.737213951634147	-0.740264187498491	-0.742857569821679	0.0418983010157508	0.98887086484455	1
Merged-chr11-3194219-4	chr11	3194120	3194320	+	972.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030207)	promoter-TSS (NM_030207)	-757.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132048531-2	chr4	132048431	132048631	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183428, intron 1 of 20)	CpG	547.0	NM_001128606	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-81923698-4	chr6	81923610	81923810	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177884)	promoter-TSS (NM_177884)	41.0	NM_177884	330361.0	Mm.474487	NM_177884	ENSMUSG00000035125	Gcfc2	A130099G21|AW146020|GCF2|Tcf9	GC-rich sequence DNA binding factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-40223406-4	chr12	40223309	40223509	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_035459)	promoter-TSS (NR_035459)	45.0	NR_045157	629820.0	Mm.435540	NR_045157	ENSMUSG00000035983	Gm7008	EG629820	predicted gene 7008	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-117872723-1	chr4	117872623	117872823	+	670.0	f1_balb.idr	promoter-TSS (NM_001034876)	promoter-TSS (NM_001034876)	-253.0	NM_001034876	381546.0	Mm.440118	NM_001034876	ENSMUSG00000078588	Ccdc24	Gm1028	coiled-coil domain containing 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-25305110-3	chr2	25305011	25305211	+	836.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008169, exon 6 of 20)	exon (NM_008169, exon 6 of 20)	13891.0	NM_001242940	320354.0	Mm.445875	NM_001242940		Grin1os	E130003G02Rik	glutamate receptor, ionotropic, NMDA1 (zeta 1), opposite strand	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-43479981-4	chr10	43479882	43480082	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199028, intron 1 of 3)	CpG	842.0	NM_199028	331623.0	Mm.490388	NM_199028	ENSMUSG00000038214	Bend3	mKIAA1553	BEN domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-14173815-2	chr5	14173715	14173915	+	719.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011348, intron 4 of 16)	intron (NM_011348, intron 4 of 16)	148539.0	NM_011348	20349.0	Mm.134093	NM_011348	ENSMUSG00000063531	Sema3e	6430702L12|AA408817|Semah|mKIAA0331	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-43667278-4	chr19	43667170	43667370	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145156, intron 1 of 3)	intron (NM_145156, intron 1 of 3)	7611.0	NM_145156	246696.0	Mm.23827	NM_145156	ENSMUSG00000040414	Slc25a28	Mfrn2|Mrs3/4	solute carrier family 25, member 28	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117386268-2	chr8	117386168	117386368	+	994.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028941, intron 3 of 20)	intron (NM_028941, intron 3 of 20)	37098.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-17641633-1	chr17	17641533	17641733	+	574.0	f1_c57bl6.idr	Intergenic	Intergenic	-17144.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	1.88440032789661	1.26701333488931	1.89670696295889	3.17857970844288	2.58723916548057	2.6470101877992	1.24102069581761	2.00464715685822	-0.116588132028649	0.911632216484561	0.998431161219273
Merged-chr7-145113178-2	chr7	145113078	145113278	+	703.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	94941.0	NR_033626	100040049.0	Mm.102235	NR_033626	ENSMUSG00000109305	1810010D01Rik	Gm2572	RIKEN cDNA 1810010D01 gene	ncRNA	0.485392533321432	0.362890160584332	0.925551607949535	0.350444899797402	0.342770740436777	0.725537982429138	0.936880995938593	0.783718794962433	0.948519520154719	0.592538833071807	1
Merged-chr3-122566245-4	chr3	122566153	122566353	+	900.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114665, intron 5 of 15)	HAL1|LINE|L1	-24572.0	NR_106117	102465764.0		NR_106117	ENSMUSG00000104773	Mir7657	mmu-mir-7657	microRNA 7657	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-43374761-1	chr18	43374661	43374861	+	691.333313	f0_balb.idr	intron (NM_001291455, intron 1 of 13)	LTR33|LTR|ERVL	-1489.0	NM_001136086	22240.0	Mm.8180	NM_009468	ENSMUSG00000024501	Dpysl3	CRMP-4|DRP-3|TUC4|ULIP-1|Ulip|Ulip1	dihydropyrimidinase-like 3	protein-coding	1.18966154450842	2.44586652791099	2.47030030880939	1.24114966353296	2.1840059716202	3.03021983447203	2.11395530792919	2.60018984184184	1.20643152863769	0.227149129735266	0.71997232966636
Merged-chr2-24311913-4	chr2	24311833	24312033	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	X7A_LINE|LINE|CR1	20737.0	NM_153077	215274.0	Mm.218750	NM_153077	ENSMUSG00000046845	Il1f10	-	interleukin 1 family, member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-52280647-2	chr14	52280547	52280747	+	986.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023434, intron 3 of 9)	URR1B|DNA|hAT-Charlie	-1252.0	NM_172601	76338.0	Mm.32870	NM_172601	ENSMUSG00000022159	Rab2b	1500012D09Rik|4930528G15Rik|A230002G14|D530043M21Rik	RAB2B, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-9534333-2	chr11	9534233	9534433	+	786.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178259, intron 46 of 61)	intron (NM_178259, intron 46 of 61)	342391.0	NM_178259	268379.0	Mm.39270	NM_178259	ENSMUSG00000004668	Abca13	9830132L24|A930002G16Rik|AI956815	ATP-binding cassette, sub-family A (ABC1), member 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-40643455-4	chr10	40643351	40643551	+	941.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_133568, intron 3 of 4)	MTC|LTR|ERVL-MaLR	13440.0	NR_133568	70503.0	Mm.252862	NM_027442	ENSMUSG00000063428	Ddo	5330420D20Rik|5730402C02Rik|AI467244	D-aspartate oxidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-56265670-4	chr9	56265589	56265789	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172924, intron 3 of 6)	Lx7|LINE|L1	-104619.0	NM_019793	56434.0	Mm.28484	NM_019793	ENSMUSG00000032324	Tspan3	1700055K04Rik|TM4-A|Tm4sf8	tetraspanin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-24980333-8	chr12	24980217	24980417	+	812.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081378, intron 1 of 31)	(CAGG)n|Simple_repeat|Simple_repeat	5385.0	NM_001081378	77480.0	Mm.250641	NM_001081378	ENSMUSG00000036333	Kidins220	3110039L19Rik|AI194387|AI316525|C330002I19Rik|mKIAA1250	kinase D-interacting substrate 220	protein-coding	4.20164519811151	4.61343619161178	3.99460554314558	3.82042084734406	3.6574800082407	4.01594840852958	3.6473657350423	3.69590205787237	-0.596882573235387	0.189413661758587	0.667621948818899
Merged-chr11-113766489-4	chr11	113766394	113766594	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Charlie8|DNA|hAT-Charlie	-14679.0	NM_001163346	56699.0	Mm.293378	NM_020006	ENSMUSG00000041598	Cdc42ep4	1500041M20Rik|Borg4|CEP4	CDC42 effector protein (Rho GTPase binding) 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-140078892-3	chr7	140078798	140078998	+	815.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026769, intron 1 of 5)	B3|SINE|B2	3403.0	NM_001190386	68566.0	Mm.44241	NM_026769	ENSMUSG00000025468	Caly	0710001P07Rik|1110004A22Rik|Calcyon|Drd1ip	calcyon neuron-specific vesicular protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45921474-4	chr7	45921367	45921567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010129)	promoter-TSS (NM_010129)	-41.0	NM_010129	13732.0	Mm.20829	NM_010129	ENSMUSG00000040212	Emp3	H-4|H4|HNMP-1|MI-35|Ymp	epithelial membrane protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-44408769-1	chr11	44408669	44408869	+	553.0	f0_balb.idr	intron (NM_001303244, intron 4 of 7)	intron (NM_001303244, intron 4 of 7)	8706.0	NM_001303244	16160.0	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34309466-3	chr17	34309389	34309589	+	632.416687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010382, intron 1 of 5)	intron (NM_010382, intron 1 of 5)	3622.0	NM_010382	14969.0	Mm.22564	NM_010382	ENSMUSG00000060586	H2-Eb1	Eb|H-2Eb|H2Eb|Ia-4|Ia4	histocompatibility 2, class II antigen E beta	protein-coding	0.735118055247204	-0.159326371488602	-0.165241656864449	0.511330897454535	-0.176357888487987	-0.157998097832171	-0.163933768240297	-0.169027998021758	-4.00505715588247	0.0946886553430541	1
Merged-chr2-155134226-6	chr2	155134095	155134295	+	829.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001243712, intron 1 of 25)	intron (NM_001243712, intron 1 of 25)	714.0	NM_008395	16396.0	Mm.208286	NM_008395	ENSMUSG00000027598	Itch	6720481N21Rik|8030492O04Rik|A130065M08|AIP4|C230047C07Rik	itchy, E3 ubiquitin protein ligase	protein-coding	1.27542448067494	0.871900712341404	0.857465217770639	1.47004091370733	1.40095338454718	1.81903491015859	1.74971729754057	1.045950334042	1.48932129213336	0.256822875396354	0.755701651669989
Merged-chr13-8995392-5	chr13	8995298	8995498	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027000, intron 1 of 16)	intron (NM_027000, intron 1 of 16)	614.0	NM_027000	69237.0	Mm.41800	NM_027000	ENSMUSG00000021149	Gtpbp4	2610028C09Rik|Crfg|Gtpbp3|NGB|Nog1	GTP binding protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-79665017-2	chr10	79664917	79665117	+	616.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_013591, exon 2 of 5)	exon (NM_013591, exon 2 of 5)	458.0	NM_001358785	17123.0	Mm.391556	NM_013591	ENSMUSG00000020310	Madcam1	AV211525|MAdCAM-1	mucosal vascular addressin cell adhesion molecule 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-135399682-4	chr1	135399579	135399779	+	951.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357578, intron 15 of 24)	intron (NM_001357578, intron 15 of 24)	-24616.0	NM_175259	77552.0	Mm.41407	NM_175259	ENSMUSG00000041889	Shisa4	9330132O05Rik|Tmem58|mShisa4	shisa family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-14758787-4	chr9	14758685	14758885	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029306, intron 3 of 3)	intron (NM_029306, intron 3 of 3)	-6663.0	NM_010242	14345.0	Mm.63450	NM_010242	ENSMUSG00000049307	Fut4	AI451562|CD15|FAL|FucT-IV|LeX|SSEA-1|Ssea1	fucosyltransferase 4	protein-coding	-0.802593673557486	-0.793094718163527	-0.341243695287107	-0.798614554876962	-0.802002397560642	-0.791090896558683	-0.332078011335404	-0.79819523297655	0.040958530317021	0.989184000390448	1
Merged-chr7-134690388-4	chr7	134690299	134690499	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033420, intron 1 of 51)	intron (NM_001033420, intron 1 of 51)	19712.0	NM_001033420	330662.0	Mm.436572	NM_001033420	ENSMUSG00000058325	Dock1	9130006G06Rik|AI854900|D630004B07Rik|b2b3190Clo	dedicator of cytokinesis 1	protein-coding	-1.18832717429738	-1.16380929885254	-0.856565824811958	-1.18328408639367	-1.18787580914644	-1.16149229066421	-0.849604865165746	-1.18171197755832	0.0406512889656815	0.990321405100139	1
Merged-chr15-79524862-4	chr15	79524773	79524973	+	973.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_134090, exon 3 of 5)	exon (NM_134090, exon 3 of 5)	8044.0	NM_152806	67040.0	Mm.29644	NM_152806	ENSMUSG00000055065	Ddx17	2610007K22Rik|A430025E01Rik|AI047725|C80929|Gm926|p72	DEAD (Asp-Glu-Ala-Asp) box polypeptide 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-90441587-2	chr7	90441487	90441687	+	854.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR18B|LTR|ERVK	-1194.0	NR_073436	233490.0	Mm.29496	NM_145151	ENSMUSG00000051451	Crebzf	1110034C16Rik|6330417B10Rik|LAZip|LAZipII|SMILE|Zf	CREB/ATF bZIP transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-43847725-4	chr5	43847636	43847836	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21073.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	1.93556186127175	2.0257940186428	1.16270533038494	1.1362139489962	1.25435118657174	1.56361661887023	1.64441011791023	0.93443565163797	-0.881379724921493	0.470381839967566	0.925692944111129
Merged-chr13-23534926-4	chr13	23534827	23535027	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145073)	promoter-TSS (NM_145073)	-491.0	NM_145073	97908.0	Mm.261657	NM_145073	ENSMUSG00000099517	Hist1h3g	H3.1-221|M32460	histone cluster 1, H3g	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-52539432-3	chr2	52539340	52539540	+	698.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037099, intron 2 of 13)	intron (NM_001037099, intron 2 of 13)	19171.0	NM_146123	12298.0	Mm.330223	NM_146123	ENSMUSG00000017412	Cacnb4	3110038O15Rik|Cchb4|lh	calcium channel, voltage-dependent, beta 4 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-79994633-4	chr10	79994599	79994799	+	898.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007725, exon 7 of 7)	3' UTR (NM_007725, exon 7 of 7)	-2909.0	NM_001347081	27403.0	Mm.103351	NM_013850	ENSMUSG00000035722	Abca7	ABCX|Abc51	ATP-binding cassette, sub-family A (ABC1), member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134429584-1	chr6	134429484	134429684	+	647.0	f1_c57bl6.idr	intron (NM_001355686, intron 3 of 5)	(CA)n|Simple_repeat|Simple_repeat	15156.0	NM_001355686	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	2.4795178516785	2.15176039455935	1.33270365398962	2.25815764898452	2.05706471526162	1.83691395920568	2.34110904214533	2.54703604943541	0.23018128663135	0.806592765489276	0.998431161219273
Merged-chr4-53103285-2	chr4	53103222	53103422	+	598.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 7 of 49)	(CA)n|Simple_repeat|Simple_repeat	56573.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-38028135-3	chr13	38028031	38028231	+	944.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027724, exon 3 of 13)	exon (NM_027724, exon 3 of 13)	8806.0	NM_027724	71213.0	Mm.314688	NM_027724	ENSMUSG00000044566	Cage1	4933427I01Rik|Ctag3	cancer antigen 1	protein-coding	4.26824434705448	3.99607028477744	4.01851754010047	3.38068850615143	1.23255715739657	2.81196216146253	1.389284975892	1.32824421748786	-3.71803341031967	0.00496736236311565	0.0666152164299496
Merged-chr5-143464566-4	chr5	143464462	143464662	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144915)	promoter-TSS (NM_144915)	69.0	NM_144915	231871.0	Mm.469963	NM_144915	ENSMUSG00000039206	Daglb	E330036I19Rik	diacylglycerol lipase, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-51696701-3	chr13	51696592	51696792	+	760.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44984.0	NM_029279	75420.0	Mm.275981	NM_029279	ENSMUSG00000035139	Secisbp2	2210413N07Rik|2810012K13Rik|SBP2	SECIS binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-80264549-1	chr12	80264449	80264649	+	544.0	f1_c57bl6.idr	Intergenic	Intergenic	-4168.0	NM_001346669	109711.0	Mm.253564	NM_134156	ENSMUSG00000015143	Actn1	3110023F10Rik|Actn1a	actinin, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70629607-3	chr14	70629500	70629700	+	628.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252665)	promoter-TSS (NM_001252665)	-553.0	NM_001360030	13829.0	Mm.210863	NM_013514	ENSMUSG00000022099	Dmtn	AI325486|Epb4.9|Epb49|dematin	dematin actin binding protein	protein-coding	2.37078494727268	4.216318776092	3.55608063557023	2.79414835883354	3.07406886335681	3.62421462157578	3.24159323774967	3.31938026168964	-0.153427335824806	0.810432638529172	0.998431161219273
Merged-chr14-70068529-2	chr14	70068429	70068629	+	995.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8916.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-111052910-1	chr9	111052810	111053010	+	586.0	f0_balb.idr	Intergenic	Intergenic	4334.0	NM_001302377	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83641910-2	chr6	83641810	83642010	+	792.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	14206.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-67899569-4	chr15	67899504	67899704	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	359252.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-145683319-2	chr4	145683219	145683419	+	576.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001103158, intron 2 of 4)	Lx3B|LINE|L1	12622.0	NM_001103158	100041379.0	Mm.276881	NM_001103158	ENSMUSG00000058186	Zfp980	Gm13242	zinc finger protein 980	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-62526647-2	chr4	62526547	62526747	+	577.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356422, intron 1 of 11)	L2b|LINE|L2	1004.0	NM_001356421	214106.0	Mm.73212	NM_177607	ENSMUSG00000058046	4933430I17Rik	bN189G18.7	RIKEN cDNA 4933430I17 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-64989653-4	chr18	64989566	64989766	+	956.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114386, intron 1 of 30)	intron (NM_001114386, intron 1 of 30)	-33861.0	NM_031881	83814.0	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-132931110-4	chr7	132931016	132931216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001362198)	promoter-TSS (NM_001362198)	-26.0	NM_207302	360216.0	Mm.389984	NM_207302	ENSMUSG00000030967	Zranb1	9330160G10Rik|D7Wsu87e|Gm1956|Trabid	zinc finger, RAN-binding domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36711191-3	chr18	36711072	36711272	+	755.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20B3|LTR|ERVK	-15247.0	NM_172831	240216.0	Mm.252323	NM_172831	ENSMUSG00000044719	E230025N22Rik	EG240216	Riken cDNA E230025N22 gene	protein-coding	0.570130958305355	0.0786872815024907	1.05620320282239	0.246220376865116	0.0588089149414701	0.0802361848016917	0.270053658579244	0.0673684952036212	-3.35469239046797	0.0975772143279568	1
Merged-chr16-45148768-4	chr16	45148651	45148851	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028756, intron 4 of 6)	intron (NM_028756, intron 4 of 6)	9922.0	NM_001356453	74102.0	Mm.264984	NM_028756	ENSMUSG00000022664	Slc35a5	1010001J06Rik|AU021179|BB097433|D16Ertd450e|D730043G07Rik	solute carrier family 35, member A5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-67986704-3	chr8	67986606	67986806	+	889.944458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12132.0	NM_177698	234353.0	Mm.32525	NM_027626	ENSMUSG00000030465	Psd3	4931420C21Rik|AI661273|BC003498|D430018P08|EFA6D	pleckstrin and Sec7 domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-50677355-1	chr17	50677255	50677455	+	642.0	f1_c57bl6.idr	intron (NM_013880, intron 5 of 5)	intron (NM_013880, intron 5 of 5)	-21326.0	NM_001297747	12228.0	Mm.392910	NM_009770	ENSMUSG00000022863	Btg3	ANA|tob5	B cell translocation gene 3	protein-coding	-1.84436392554074	-1.52091821270385	-1.82290882857571	-1.83054882630441	-1.84220491470818	-1.81159244170985	-1.82080331928423	-1.82918127036376	-1.56828060379516	0.655578384384393	1
Merged-chr2-150136691-4	chr2	150136588	150136788	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181266)	promoter-TSS (NM_181266)	-10.0	NM_181266	104348.0	Mm.485851	NM_023266	ENSMUSG00000068134	Zfp120	AI315103|E030042N05Rik|F80|MZF31|Zfp844	zinc finger protein 120	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-123797209-3	chr3	123797119	123797319	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT2D|LTR|ERVL	-106367.0	NR_121616	83398.0	Mm.443908	NM_031186	ENSMUSG00000027977	Ndst3	4921531K01Rik|4930511P15Rik|N-HSST 3|NDST-3	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3	protein-coding	2.31619253080034	1.45794342650648	1.38300522226999	1.32073483474874	4.30916343262307	4.87655495425601	3.73654141494523	4.20548281467556	4.66639734923005	1.86959271543317e-08	2.01479401794316e-06
Merged-chr1-88250096-2	chr1	88249996	88250196	+	975.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001281466, intron 28 of 41)	intron (NM_001281466, intron 28 of 41)	19312.0	NR_040291	78605.0	Mm.384762	NR_040291		6430706D22Rik	-	RIKEN cDNA 6430706D22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-58021114-2	chr15	58021014	58021214	+	980.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13180.0	NM_029418	75758.0	Mm.455792	NM_029418	ENSMUSG00000101892	9130401M01Rik	AI849328	RIKEN cDNA 9130401M01 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-69241707-2	chr14	69241607	69241807	+	666.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_026331)	TTS (NM_026331)	43396.0	NM_026331	67712.0	Mm.293635	NM_026331	ENSMUSG00000034248	Slc25a37	1700020E22Rik|4930513O14Rik|4930526G11Rik|AI848481|C330015G08Rik|Mfrn|Mfrn1|Mscp|frascati|mitoferrin	solute carrier family 25, member 37	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-109060700-2	chr9	109060600	109060800	+	600.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011637)	promoter-TSS (NM_011637)	-977.0	NM_011637	22040.0	Mm.439964	NM_011637	ENSMUSG00000049734	Trex1	AU041952	three prime repair exonuclease 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-80716125-2	chr18	80716025	80716225	+	795.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3054.0	NM_001164110	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-110630387-4	chr7	110630287	110630487	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009627)	TTS (NM_009627)	2730.0	NM_009627	11535.0	Mm.1408	NM_009627	ENSMUSG00000030790	Adm	AM	adrenomedullin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-63873657-4	chr17	63873564	63873764	+	944.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037997, intron 1 of 18)	intron (NM_001037997, intron 1 of 18)	-4402.0	NM_001286415	14158.0	Mm.23039	NM_008000	ENSMUSG00000000127	Fer	AV082135|C330004K01Rik|Fert|Fert2	fer (fms/fps related) protein kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-83953909-4	chr12	83953807	83954007	+	938.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_023633)	TTS (NM_023633)	3299.0	NM_023633	71952.0	Mm.251483	NM_023633	ENSMUSG00000046791	Riox1	2410016O06Rik|MAPJD|NO66	ribosomal oxygenase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24718757-1	chr17	24718657	24718857	+	744.0	f1_c57bl6.idr	promoter-TSS (NM_026205)	promoter-TSS (NM_026205)	-700.0	NM_026205	67504.0	Mm.46159	NM_026205	ENSMUSG00000008482	Rnf151	1700010O16Rik|AV047371	ring finger protein 151	protein-coding	1.4704189281513	2.28986386802884	3.55096886781984	3.29740635947264	2.29503642450024	1.37462806413812	2.73438275058146	1.98383871823271	-1.35989783061918	0.140088981410041	0.584418497551346
Merged-chr17-35872593-2	chr17	35872493	35872693	+	677.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001146710, intron 2 of 3)	intron (NM_001146710, intron 2 of 3)	5978.0	NM_175242	76448.0	Mm.359982	NM_175242	ENSMUSG00000034595	Ppp1r18	2310014H01Rik|AA407849|AI450394	protein phosphatase 1, regulatory subunit 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124542586-2	chr5	124542486	124542686	+	656.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019770, intron 1 of 3)	PB1D9|SINE|Alu	1795.0	NM_019770	56334.0	Mm.325307	NM_019770	ENSMUSG00000029390	Tmed2	1110032D12Rik|1810020N21Rik|Rnp24|Sid394|p24beta1	transmembrane p24 trafficking protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-162958465-4	chr2	162958334	162958534	+	738.474976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081338, intron 8 of 22)	intron (NM_001081338, intron 8 of 22)	14969.0	NM_001081338	241764.0	Mm.187086	NM_001081338	ENSMUSG00000035576	L3mbtl1	C630004G01|L3mbtl|mKIAA0681	L3MBTL1 histone methyl-lysine binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-79503885-4	chr14	79503796	79503996	+	874.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007920, intron 1 of 8)	MTE2a|LTR|ERVL-MaLR	-11778.0	NM_001286412	13709.0	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41378610-2	chr19	41378510	41378710	+	647.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 1 of 16)	ID_B1|SINE|B4	6460.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	2.34675762659793	2.019698693871	1.21170390297276	2.01811329545078	2.21336744098411	2.28621397452783	1.21742176938735	2.02863359320206	0.0901843834049764	0.932944014683633	0.998431161219273
Merged-chr5-54071583-2	chr5	54071483	54071683	+	702.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081103, intron 2 of 11)	intron (NM_001081103, intron 2 of 11)	73060.0	NM_001081103	116873.0	Mm.265985	NM_054083	ENSMUSG00000039156	Stim2	-	stromal interaction molecule 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-4531255-1	chr5	4531155	4531355	+	1000.0	f0_c57.idr	Intergenic	MLT1J2|LTR|ERVL-MaLR	226961.0	NM_021457	14362.0	Mm.246003	NM_021457	ENSMUSG00000044674	Fzd1	AW227548|FZ-1|Fz1	frizzled class receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-33119142-4	chr19	33119047	33119247	+	950.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16B1|LTR|ERVL	-37965.0	NR_039552	100628575.0		NR_039552	ENSMUSG00000106278	Mir3970	mmu-mir-3970|mu-mir-3970	microRNA 3970	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-73041599-1	chr16	73041499	73041699	+	623.0	f1_balb.idr	intron (NM_019413, intron 27 of 28)	RMER6C|LTR|ERVK	378450.0	NM_019413	19876.0	Mm.310772	NM_019413	ENSMUSG00000022883	Robo1	AW494633|AW742721|DUTT1|Gm310	roundabout guidance receptor 1	protein-coding	-0.858426109946823	-0.534634453208066	-0.853793388348266	-0.855546526377394	-0.729205058559346	-0.528285255329003	-0.8532896745325	-0.855241257593145	0.575337188767327	0.842556499662088	1
Merged-chr17-26934653-2	chr17	26934553	26934753	+	664.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_105934)	promoter-TSS (NR_105934)	-819.0	NR_105934	102465584.0		NR_105934	ENSMUSG00000098510	Mir6968	Gm27666|mmu-mir-6968	microRNA 6968	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71403574-1	chr8	71403474	71403674	+	648.0	f1_balb.idr	intron (NM_026636, intron 8 of 8)	intron (NM_026636, intron 8 of 8)	-2438.0	NM_001310502	234396.0	Mm.216549	NM_172756	ENSMUSG00000046295	Ankle1	8430438L13Rik|Ankrd41|C430003I23|Lem3	ankyrin repeat and LEM domain containing 1	protein-coding	1.37552126173955	1.33077932601947	1.77282811877387	1.44132887253071	1.22392878593726	2.09243439852428	1.78713365321315	2.21508504810731	1.24715712335871	0.250688272330892	0.748570903789459
Merged-chr2-44985204-3	chr2	44985084	44985284	+	886.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001355289, exon 11 of 11)	3' UTR (NM_001355289, exon 11 of 11)	37993.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-63943055-2	chr4	63942955	63943155	+	565.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-81771.0	NM_009403	21949.0	Mm.4664	NM_009403	ENSMUSG00000028362	Tnfsf8	CD153|CD30LG|Cd30l|Tnlg3a	tumor necrosis factor (ligand) superfamily, member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122283554-4	chr8	122283425	122283625	+	944.241699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009569, intron 1 of 9)	intron (NM_009569, intron 1 of 9)	1384.0	NM_009569	22761.0	Mm.3105	NM_009569	ENSMUSG00000049577	Zfpm1	FOG|Fog1	zinc finger protein, multitype 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-120674793-2	chr10	120674693	120674893	+	715.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-90939.0	NR_038000	70874.0	Mm.427286	NR_038000	ENSMUSG00000044544	4921513I03Rik	-	RIKEN cDNA 4921513I03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-85124071-4	chr16	85123964	85124164	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198825, intron 1 of 15)	intron (NM_001198825, intron 1 of 15)	49643.0	NM_001198825	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152583714-2	chr1	152583614	152583814	+	756.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 3 of 17)	intron (NM_016846, intron 3 of 17)	41503.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47737737-4	chr17	47737650	47737850	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161723)	promoter-TSS (NM_001161723)	-181.0	NM_001161723	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	3.83999069134899	2.63553135041243	3.61977321583957	4.27406572874126	3.92118762647946	2.99854667038297	3.80139104098335	4.29387936362569	0.162511596222551	0.771971531707248	0.998431161219273
Merged-chr10-80929204-4	chr10	80929126	80929326	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008655)	promoter-TSS (NM_008655)	-865.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120444023-2	chr11	120443923	120444123	+	732.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145363, intron 1 of 2)	intron (NM_145363, intron 1 of 2)	1392.0	NM_145363	208634.0	Mm.209875	NM_145363	ENSMUSG00000039691	Tspan10	Ocsp	tetraspanin 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-90701534-2	chr5	90701471	90701671	+	753.125	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-57727.0	NM_009141	20311.0	Mm.4660	NM_009141	ENSMUSG00000029371	Cxcl5	AMCF-II|Cxcl6|ENA-78|GCP-2|LIX|Scyb5|Scyb6	chemokine (C-X-C motif) ligand 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-33756587-2	chr2	33756487	33756687	+	569.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175184, intron 7 of 9)	intron (NM_175184, intron 7 of 9)	-49229.0	NR_045729	320482.0	Mm.442057	NR_045729	ENSMUSG00000086484	Nron	A630071L07Rik|Gm24353	non-protein coding RNA, repressor of NFAT	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-149191896-2	chr4	149191796	149191996	+	616.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_207682, intron 37 of 46)	GA-rich|Low_complexity|Low_complexity	-25191.0	NM_001081274	110208.0	Mm.252080	NM_025801	ENSMUSG00000028961	Pgd	0610042A05Rik|AU019875|C78335	phosphogluconate dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-55692097-2	chr13	55691997	55692197	+	743.125	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1027.0	NM_181278	78521.0	Mm.28449	NM_181278	ENSMUSG00000045767	B230219D22Rik	AA119856|D530037I19Rik	RIKEN cDNA B230219D22 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-92923762-4	chr13	92923673	92923873	+	996.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	78986.0	NM_001162945	382793.0	Mm.296770	NM_001162945	ENSMUSG00000021704	Mtx3	4930470O13Rik|AA409304|AI853833|AU067765|EG624619|Gm1194|Gm6514	metaxin 3	protein-coding	2.09312081898349	4.10092047354686	3.47839695498185	3.21949306113103	2.5643238458086	2.60428798609129	4.2727531578923	2.03985651962794	-0.324063728819084	0.672526392930536	0.99440487726309
Merged-chr13-37338037-4	chr13	37337906	37338106	+	979.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7339.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99135486-3	chr7	99135375	99135575	+	669.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 1 of 14)	intron (NM_178635, intron 1 of 14)	5669.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-128379641-4	chr7	128379558	128379758	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026418, intron 4 of 4)	intron (NM_026418, intron 4 of 4)	38514.0	NM_026418	67865.0	Mm.18635	NM_026418	ENSMUSG00000030844	Rgs10	2310010N19Rik	regulator of G-protein signalling 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-59818003-3	chr13	59817893	59818093	+	869.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153538, intron 2 of 27)	intron (NM_153538, intron 2 of 27)	5154.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-74341234-4	chr13	74341149	74341349	+	593.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023281, intron 3 of 14)	intron (NM_023281, intron 3 of 14)	8991.0	NM_023281	66945.0	Mm.158231	NM_023281	ENSMUSG00000021577	Sdha	1500032O14Rik|2310034D06Rik|4921513A11|C81073|FP|SDH2|SDHF	succinate dehydrogenase complex, subunit A, flavoprotein (Fp)	protein-coding	1.42691932401027	1.76623741194887	1.34385478966134	2.02611451383733	1.26502582092561	1.60298089647071	2.61389110780283	2.0372213042606	0.887316378648012	0.403543613607671	0.888897182593852
Merged-chr19-10844673-4	chr19	10844548	10844748	+	808.446411	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023044, intron 1 of 7)	intron (NM_023044, intron 1 of 7)	2104.0	NM_023044	65221.0	Mm.27387	NM_023044	ENSMUSG00000024737	Slc15a3	Ci1|cI-1	solute carrier family 15, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-6443679-2	chr4	6443579	6443779	+	642.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010945, intron 1 of 30)	intron (NM_010945, intron 1 of 30)	10592.0	NM_010945	18201.0	Mm.3059	NM_010945	ENSMUSG00000028245	Nsmaf	AA959567|C630007J05|Fan	neutral sphingomyelinase (N-SMase) activation associated factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-37639910-4	chr3	37639840	37640040	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001305442)	promoter-TSS (NM_001305442)	-7.0	NM_001305441	24063.0	Mm.330986	NM_011896	ENSMUSG00000037211	Spry1	sprouty1|spry-1	sprouty RTK signaling antagonist 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-27196329-4	chr7	27196219	27196419	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015782)	promoter-TSS (NM_015782)	-48.0	NM_001285825	53607.0	Mm.386890	NM_015782	ENSMUSG00000061479	Snrpa	C430021M15Rik|Rnu1a-1|Rnu1a1|U1-A|U1A	small nuclear ribonucleoprotein polypeptide A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-75196542-4	chr9	75196430	75196630	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010864, intron 32 of 40)	intron (NM_010864, intron 32 of 40)	-35484.0	NM_001081322	208943.0	Mm.41339	NM_001081322	ENSMUSG00000033590	Myo5c	9130003O20Rik|BB085560|C330029I24	myosin VC	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-34674474-2	chr6	34674374	34674574	+	571.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347100, intron 2 of 13)	B4|SINE|B4	-34970.0	NM_145575	109624.0	Mm.308134	NM_145575	ENSMUSG00000029761	Cald1	4833423D12Rik|AI195384|AV071549|AW536160|C920027I18Rik	caldesmon 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-70281196-3	chr10	70281089	70281289	+	742.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025807, intron 4 of 5)	MIRb|SINE|MIR	35913.0	NM_025807	66859.0	Mm.19325	NM_025807	ENSMUSG00000037762	Slc16a9	1200003C15Rik|4930425B13Rik|AI552636	solute carrier family 16 (monocarboxylic acid transporters), member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19210387-1	chr7	19210287	19210487	+	664.0	f1_balb.idr	Intergenic	RSINE1|SINE|B4	-2151.0	NM_175668	319197.0	Mm.135984	NM_175668	ENSMUSG00000044317	Gpr4	-	G protein-coupled receptor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-91756884-4	chr12	91756782	91756982	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 1 of 6)	intron (NM_175367, intron 1 of 6)	29554.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-125275387-3	chr5	125275279	125275479	+	901.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	65715.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-87105685-2	chr17	87105585	87105785	+	741.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1994.0	NM_019654	56468.0	Mm.126885	NM_019654	ENSMUSG00000037104	Socs5	1810018L08Rik|Cish5|mKIAA0671	suppressor of cytokine signaling 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-13251615-2	chr8	13251515	13251715	+	752.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172750, intron 1 of 6)	intron (NM_172750, intron 1 of 6)	2547.0	NM_172750	234072.0	Mm.132785	NM_172750	ENSMUSG00000031448	Adprhl1	Arh2|D330008N11Rik	ADP-ribosylhydrolase like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100530347-1	chr7	100530247	100530447	+	780.0	f1_balb.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-6753.0	NM_183270	68185.0	Mm.228995	NM_183270	ENSMUSG00000044881	Coa4	5330414O08Rik|AI115477|AW047259|Chchd8|E2ig2	cytochrome c oxidase assembly factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-137289241-2	chr5	137289144	137289344	+	776.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_009599, intron 1 of 4)	CpG	990.0	NM_001290010	11423.0	Mm.255464	NM_009599	ENSMUSG00000023328	Ache	-	acetylcholinesterase	protein-coding	1.38543510161931	1.57372145678915	0.851502175196294	1.76633014458445	1.67872768290439	0.869521046640511	0.854776515132725	1.47538663240808	-0.567604356586007	0.683598274132793	0.99609085414686
Merged-chr10-127331325-2	chr10	127331248	127331448	+	644.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_010296, exon 13 of 13)	exon (NM_010296, exon 13 of 13)	5706.0	NM_001359657	216445.0	Mm.227198	NM_146011	ENSMUSG00000040345	Arhgap9	AU043488	Rho GTPase activating protein 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-33126464-2	chr12	33126368	33126568	+	591.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_015602, intron 4 of 5)	intron (NR_015602, intron 4 of 5)	21118.0	NR_015602	320046.0	Mm.208337	NR_015602	ENSMUSG00000052125	F730043M19Rik	-	RIKEN cDNA F730043M19 gene	ncRNA	-1.20406370813143	-1.56956373024278	-1.57884638916872	-1.58647144159385	-1.598104728449	-1.56755213932999	-1.57674499865798	-1.58510656085539	-1.70745470802464	0.626337835847419	1
Merged-chr6-125001351-4	chr6	125001258	125001458	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145926, intron 4 of 5)	intron (NM_001145926, intron 4 of 5)	2748.0	NM_001145926	319352.0	Mm.295327	NM_175696	ENSMUSG00000030329	Pianp	AI255183|AU067746|C530028O21Rik|Panp	PILR alpha associated neural protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-16673830-1	chr8	16673730	16673930	+	639.0	f1_balb.idr	intron (NM_053171, intron 5 of 69)	RMER13A|LTR|ERVK	-504992.0	NR_037214	100526464.0		NR_037214	ENSMUSG00000093142	Mir3106	mir-3106|mmu-mir-3106	microRNA 3106	ncRNA	0.355534660629655	-0.295919139879757	-0.300791846670685	-0.304559912120764	-0.309898026114327	-0.294822461771751	0.4080411031491	-0.303901085994772	0.152650442830812	0.953283496292694	1
Merged-chr10-80586032-2	chr10	80585932	80586132	+	562.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145421, intron 2 of 4)	intron (NM_145421, intron 2 of 4)	4309.0	NM_145421	216169.0	Mm.29802	NM_145421	ENSMUSG00000003346	Abhd17a	1700013O15Rik|BC005632|D10Bwg1364e|Fam108a	abhydrolase domain containing 17A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71526983-4	chr17	71526888	71527088	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023294)	promoter-TSS (NM_023294)	-131.0	NM_023294	67052.0	Mm.225956	NM_023294	ENSMUSG00000024056	Ndc80	2610020P18Rik|AV139730|HEC|HEC1|Kntc2	NDC80 kinetochore complex component	protein-coding	5.92600734630911	5.65114762586043	6.2092180240949	6.0188995366191	6.07357928767449	5.74507965728671	5.5243723130892	6.21428512801175	-0.0503714660420668	0.840895490944001	0.998431161219273
Merged-chr16-20692504-2	chr16	20692404	20692604	+	776.166626	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001304432, exon 32 of 32)	3' UTR (NM_001304432, exon 32 of 32)	-2553.0	NM_133778	78408.0	Mm.196512	NM_133778	ENSMUSG00000050821	Fam131a	2900046G09Rik	family with sequence similarity 131, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-49243389-4	chr11	49243289	49243489	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010794)	promoter-TSS (NM_010794)	-802.0	NM_010794	17308.0	Mm.196933	NM_010794	ENSMUSG00000020346	Mgat1	Mgat-1	mannoside acetylglucosaminyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-83523738-3	chr13	83523607	83523807	+	775.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347574)	promoter-TSS (NM_001347574)	51.0	NM_001347573	17260.0	Mm.24001	NM_025282	ENSMUSG00000005583	Mef2c	5430401D19Rik|9930028G15Rik|AV011172|Mef2	myocyte enhancer factor 2C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-95349206-4	chr8	95349100	95349300	+	893.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3096.0	NM_008609	17388.0	Mm.217116	NM_008609	ENSMUSG00000031790	Mmp15	AI503551|MT-MMP 2|MT2-MMP	matrix metallopeptidase 15	protein-coding	1.18263475929767	2.36769719291614	2.66849082585937	1.24343393771603	0.964685594663989	1.90624932114664	1.28799002693617	2.01903570970065	-1.08664196983137	0.347716219106393	0.847729374170411
Merged-chr11-118291547-2	chr11	118291447	118291647	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1303.0	NM_001033528	72344.0	Mm.232293	NM_001033528	ENSMUSG00000033909	Usp36	2700002L06Rik|mKIAA1453	ubiquitin specific peptidase 36	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122143693-2	chr5	122143593	122143793	+	673.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER119|DNA|hAT-Charlie	-5631.0	NM_183307	330188.0	Mm.386907	NM_183307	ENSMUSG00000043036	Ccdc63	4921511C16Rik	coiled-coil domain containing 63	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70203528-3	chr14	70203444	70203644	+	799.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011366, intron 1 of 20)	intron (NM_011366, intron 1 of 20)	1079.0	NM_001271408	20410.0	Mm.5068	NM_011366	ENSMUSG00000022091	Sorbs3	SCAM-1|SH3P3|Sh3d4|vinexin-g	sorbin and SH3 domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-116733763-4	chr6	116733672	116733872	+	893.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17014.0	NM_178768	319776.0	Mm.133120	NM_178768	ENSMUSG00000048108	Tmem72	C230095G01Rik	transmembrane protein 72	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30593399-1	chr7	30593299	30593499	+	563.5	f0_balb.idr	promoter-TSS (NM_021397)	promoter-TSS (NM_021397)	-457.0	NM_021397	58206.0	Mm.116789	NM_021397	ENSMUSG00000006310	Zbtb32	4930524C15Rik|FAXF|FAZF|PLZP|Rog|Tzfp	zinc finger and BTB domain containing 32	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-120387527-3	chr14	120387426	120387626	+	879.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360376, intron 4 of 8)	intron (NM_001360376, intron 4 of 8)	81074.0	NM_001360376	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-120835284-4	chr14	120835099	120835299	+	965.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-75995.0	NM_023579	70572.0	Mm.221452	NM_023579	ENSMUSG00000030662	Ipo5	1110011C18Rik|5730478E03Rik|AA409333|C76941|IMB3|Kpnb3|Ranbp5|imp5	importin 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-88077329-4	chr1	88077220	88077420	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201644, intron 1 of 4)	RLTR17|LTR|ERVK	6541.0	NM_201644	394434.0	Mm.300095	NM_201644	ENSMUSG00000090175	Ugt1a9	UDPGT|UDPGT 1-9|UGT1-09|UGT1.9|UGTP4|Ugt1a12|mUGTBr/P	UDP glucuronosyltransferase 1 family, polypeptide A9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-76372127-4	chr12	76371965	76372165	+	775.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178744, intron 1 of 1)	intron (NM_178744, intron 1 of 1)	1799.0	NM_178744	268564.0	Mm.77065	NM_178744	ENSMUSG00000033454	Zbtb1	9430077A12|AI256369|Bsg2|C430003J21Rik	zinc finger and BTB domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-41138308-1	chr9	41138208	41138408	+	545.0	f1_balb.idr	intron (NM_176860, intron 1 of 13)	intron (NM_176860, intron 1 of 13)	19754.0	NM_176860	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	1.29284837427986	1.59756579673774	0.763240643788085	0.752682034574767	1.30503490195181	1.35362691711731	1.65088865610429	0.754537425340176	0.566838367201737	0.696564789445811	0.997929106458421
Merged-chr2-29194142-2	chr2	29194042	29194242	+	741.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001305805)	TTS (NM_001305805)	53957.0	NM_001305805	171171.0	Mm.442448	NM_133500	ENSMUSG00000035513	Ntng2	2610016D08Rik|Lmnt2	netrin G2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-49751276-4	chr7	49751109	49751309	+	797.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-7897.0	NM_001146053	53415.0	Mm.20801	NM_016865	ENSMUSG00000039745	Htatip2	AW111545|Cc3|Tip30	HIV-1 Tat interactive protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-35551950-3	chr5	35551838	35552038	+	898.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23132.0	NM_030208	78890.0	Mm.98522	NM_030208	ENSMUSG00000029097	Trmt44	2310079F23Rik|Mettl19	tRNA methyltransferase 44	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-59188811-4	chr2	59188704	59188904	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 1 of 20)	Lx7|LINE|L1	27954.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-60730523-2	chr19	60730423	60730623	+	743.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25464.0	NM_178421	332397.0	Mm.186390	NM_178421	ENSMUSG00000072437	Nanos1	NOS-1	nanos C2HC-type zinc finger 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-6580658-2	chr6	6580565	6580765	+	694.5	f0_balb.idr|f1_balb.idr	Intergenic	Lx8|LINE|L1	-2007.0	NM_009169	20422.0	Mm.2469	NM_009169	ENSMUSG00000042541	Sem1	DSS1|Shfdg1|Shfg|Shfm1	SEM1, 26S proteasome complex subunit	protein-coding	2.2013958995106	2.31150770319132	2.78820288312662	2.1658753112761	2.47701339124347	3.58850123513797	3.01557338139639	3.4904846888489	1.54483077970757	0.0311941264241459	0.243457282903795
Merged-chr8-108699250-3	chr8	108699159	108699359	+	793.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15385.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-145211057-4	chr6	145210949	145211149	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133688)	promoter-TSS (NM_133688)	-79.0	NM_177222	320662.0	Mm.207779	NM_177222	ENSMUSG00000043541	Casc1	A230084G12Rik|Las1	cancer susceptibility candidate 1	protein-coding	7.82223667334708	8.02048533369281	8.12627247827823	7.82592375795329	8.04712551660896	8.55770136607859	8.18160950921237	7.78892176689319	0.2207960126915	0.160688429723905	0.620823714394832
Merged-chr17-26957162-4	chr17	26957043	26957243	+	994.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001281491, exon 8 of 19)	exon (NM_001281491, exon 8 of 19)	-9024.0	NR_037244	100526534.0		NR_037244	ENSMUSG00000093118	Mir3083	mir-3083|mmu-mir-3083	microRNA 3083	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-137610888-3	chr3	137610808	137611008	+	849.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-12764.0	NM_030143	73284.0	Mm.250841	NM_030143	ENSMUSG00000046818	Ddit4l	1700037B15Rik|1700108M02Rik|REDD2|RTP801L|Smhs1	DNA-damage-inducible transcript 4-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-132301314-2	chr7	132301214	132301414	+	758.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_029935, intron 1 of 7)	intron (NM_029935, intron 1 of 7)	-14350.0	NR_028578	100043682.0	Mm.482794	NR_028578	ENSMUSG00000109270	Gm10584	-	predicted gene 10584	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127041981-4	chr10	127041901	127042101	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001205036)	promoter-TSS (NM_001205036)	69.0	NM_010792	17299.0	Mm.251593	NM_010792	ENSMUSG00000006732	Mettl1	2810012D02Rik	methyltransferase like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-114439798-2	chr5	114439698	114439898	+	780.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029956, intron 2 of 8)	MER90|LTR|ERV1	4229.0	NM_029956	77697.0	Mm.105182	NM_029956	ENSMUSG00000029575	Mmab	9130222L19Rik|ATR	methylmalonic aciduria (cobalamin deficiency) cblB type homolog (human)	protein-coding	0.868954173686609	0.439217098390005	0.600143416456742	0.832084019124579	0.878954906630335	0.440692946491569	0.605000180668375	0.837910380908888	0.0365869445450517	0.982154224339421	1
Merged-chr17-6154627-3	chr17	6154529	6154729	+	945.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054040, intron 1 of 13)	intron (NM_054040, intron 1 of 13)	16481.0	NM_054040	68842.0	Mm.449307	NM_054040	ENSMUSG00000034377	Tulp4	1110057P05Rik|2210038L17Rik|Tusp	tubby like protein 4	protein-coding	-1.23826193677681	-1.21241040182355	-1.22270105026776	-0.934241458926562	-1.23783648736863	-1.21018037537722	-1.22037147302458	-0.929982742503718	0.0323590357436516	0.9924297640193	1
Merged-chr5-73557232-4	chr5	73557123	73557323	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153313, intron 8 of 9)	intron (NR_153313, intron 8 of 9)	66197.0	NM_178896	100737.0	Mm.220312	NM_178896	ENSMUSG00000051674	Dcun1d4	AI836376	DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	protein-coding	0.8473355940266	1.85227916902269	0.893898343374593	1.10797383567025	1.51978504505294	2.19419800021514	2.19673002622051	1.11335403206546	1.84857913396869	0.145435863650534	0.595944839973915
Merged-chr10-79883443-4	chr10	79883345	79883545	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011178)	TTS (NM_011178)	-2867.0	NM_015779	50701.0	Mm.262194	NM_015779	ENSMUSG00000020125	Elane	Ela2|F430011M15Rik|NE	elastase, neutrophil expressed	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134106014-4	chr6	134105927	134106127	+	835.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 2 of 8)	intron (NM_001303102, intron 2 of 8)	70327.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-143390011-2	chr4	143389911	143390111	+	655.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4430.0	NM_031377	83491.0	Mm.190607	NM_031377	ENSMUSG00000041805	Pramel1	-	preferentially expressed antigen in melanoma-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115537568-2	chr5	115537461	115537661	+	618.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011223, intron 1 of 10)	B1_Mus2|SINE|Alu	-21906.0	NM_007475	11837.0	Mm.5286	NM_007475	ENSMUSG00000067274	Rplp0	36B4|Arbp|L10E	ribosomal protein, large, P0	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-33149101-1	chr4	33149001	33149201	+	928.0	f1_c57bl6.idr	intron (NM_008075, intron 3 of 9)	intron (NM_008075, intron 3 of 9)	16545.0	NM_008075	14408.0	Mm.14116	NM_008075	ENSMUSG00000028280	Gabrr1	GABA-C	gamma-aminobutyric acid (GABA) C receptor, subunit rho 1	protein-coding	0.354193247662539	0.575053196832974	0.951288152296728	1.00839968067316	0.506592506512603	0.378740632115573	0.962796281201178	0.364824728747941	-0.982664305328303	0.578172348739565	1
Merged-chr16-91936572-4	chr16	91936486	91936686	+	894.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4956.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-64110902-2	chr15	64110802	64111002	+	893.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 24 of 28)	intron (NM_001276461, intron 24 of 28)	-50454.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	2.21288966393938	1.06931710511162	1.88368016529124	1.42584345565637	2.09434320106876	1.07386998791248	1.89942979973764	1.43266487388466	-0.112504903743298	0.924737237519699	0.998431161219273
Merged-chr16-31274164-2	chr16	31274064	31274264	+	692.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025800, intron 1 of 5)	L1MC5a|LINE|L1	1113.0	NM_025800	66849.0	Mm.291593	NM_025800	ENSMUSG00000047714	Ppp1r2	0610025N14Rik|2310007G06Rik|4930440J04Rik|5430408E15Rik|D16Ertd248e|I-2|IPP-2	protein phosphatase 1, regulatory (inhibitor) subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115491950-4	chr5	115491816	115492016	+	999.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7432.0	NM_133760	75387.0	Mm.332616	NM_133760	ENSMUSG00000029524	Sirt4	4930596O17Rik	sirtuin 4	protein-coding	0.805187308487894	0.877356663721623	1.76778886282082	1.58214295922695	2.62826248483225	1.37705416857843	0.859773242210316	1.59180699827428	1.34187596135169	0.311199724972944	0.812396497002912
Merged-chr13-53376770-1	chr13	53376670	53376870	+	570.0	f1_c57bl6.idr	intron (NM_009269, intron 1 of 14)	intron (NM_009269, intron 1 of 14)	591.0	NM_009269	268656.0	Mm.240336	NM_009269	ENSMUSG00000021468	Sptlc1	AW552086|C77762|E030036H05|Lcb1|SPT1	serine palmitoyltransferase, long chain base subunit 1	protein-coding	0.55846361569654	0.310785713534293	1.06804112426708	0.726056466024879	0.676500499813291	0.312318964278566	0.305479197232604	0.467151343551294	-1.58598944918239	0.377643503292984	1
Merged-chr16-92410329-4	chr16	92410251	92410451	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081549, intron 1 of 3)	intron (NM_001081549, intron 1 of 3)	-10273.0	NM_019466	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-115018604-4	chr7	115018492	115018692	+	958.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	67318.0	NR_040319	101786.0	Mm.395157	NR_040317	ENSMUSG00000108379	A730082K24Rik	AU044236	RIKEN cDNA A730082K24 gene	ncRNA	4.70632447920072	5.1627595612128	4.98216590583117	3.94343521160943	3.09849111705512	4.08139672191466	3.69759072202139	3.96375951336683	-1.32953561777208	0.00327090780505848	0.0483701953719288
Merged-chr16-5009471-2	chr16	5009371	5009571	+	627.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133185, intron 10 of 10)	intron (NM_133185, intron 10 of 10)	2155.0	NR_045596	432995.0	Mm.271618	NM_001253796	ENSMUSG00000096215	Smim22	EG432995|Gm5480	small integral membrane protein 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-5133685-2	chr18	5133585	5133785	+	715.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32046.0	NR_153824	102637682.0	Mm.451914	NR_153824		Gm26682	Gm38715	predicted gene, 26682	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141078857-1	chr4	141078757	141078957	+	543.0	f1_c57bl6.idr	promoter-TSS (NM_025383)	promoter-TSS (NM_025383)	-500.0	NM_025383	66147.0	Mm.21187	NM_025383	ENSMUSG00000028923	Necap2	1110005F07Rik|AA409105|C78898|NECAP-2	NECAP endocytosis associated 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-130774188-2	chr7	130774088	130774288	+	587.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001081038, exon 1 of 16)	5' UTR (NM_001081038, exon 1 of 16)	119.0	NM_001081038	330660.0	Mm.271550	NM_001081038	ENSMUSG00000040298	Btbd16	E330040A16Rik	BTB (POZ) domain containing 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-53803267-4	chr11	53803165	53803365	+	980.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033332, intron 3 of 3)	intron (NR_033332, intron 3 of 3)	32792.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-35156070-2	chr16	35155970	35156170	+	851.75	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001012765, exon 1 of 21)	5' UTR (NM_001012765, exon 1 of 21)	434.0	NM_001012765	224129.0	Mm.41137	NM_001012765	ENSMUSG00000022840	Adcy5	AW121902|Ac5	adenylate cyclase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-43390584-3	chr16	43390493	43390693	+	936.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181058, intron 2 of 6)	intron (NM_181058, intron 2 of 6)	29603.0	NR_046026	626693.0	Mm.447083	NR_046026	ENSMUSG00000085499	Gm15713	-	predicted gene 15713	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80805899-2	chr7	80805801	80806001	+	724.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2570.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	-0.388330544060987	-0.374085620873264	-0.378739648436057	0.274110577673485	-0.387437878011824	0.276733038469635	-0.377712116928423	-0.381709508561147	0.00719453924207209	0.997840763959484	1
Merged-chr2-32694233-4	chr2	32694112	32694312	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010236)	promoter-TSS (NM_010236)	-37.0	NM_010236	14287.0	Mm.3830	NM_010236	ENSMUSG00000009566	Fpgs	AA408187	folylpolyglutamyl synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-76032559-4	chr10	76032451	76032651	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177475)	promoter-TSS (NM_177475)	-61.0	NM_177475	64453.0	Mm.80609	NM_177475	ENSMUSG00000049764	Zfp280b	D10Jhu82e|Suhw2	zinc finger protein 280B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-185248889-2	chr1	185248793	185248993	+	829.75	f0_balb.idr|f1_balb.idr	intron (NM_001163754, intron 12 of 34)	intron (NM_001163754, intron 12 of 34)	5918.0	NR_035529	100316737.0		NR_035529	ENSMUSG00000105770	Mir664	mir-664|mmu-mir-664	microRNA 664	ncRNA	0.987927923762213	1.10292876756212	1.26235398589421	0.811492104630779	2.29202185798698	1.90092285940022	0.831313140441373	1.649453062828	2.61773394568595	0.0481910042168299	0.318975175759576
Merged-chr18-49827625-4	chr18	49827508	49827708	+	904.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5389.0	NM_001081371	240283.0	Mm.257790	NM_001081371	ENSMUSG00000037416	Dmxl1	C630007L23Rik|D030030C22	Dmx-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-121984082-2	chr14	121984040	121984240	+	733.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026861, intron 6 of 8)	intron (NM_026861, intron 6 of 8)	-18947.0	NM_183031	321019.0	Mm.265618	NM_183031	ENSMUSG00000051212	Gpr183	Ebi2	G protein-coupled receptor 183	protein-coding	0.704585753143305	0.610812776978024	0.272368087629163	0.421492246284341	0.516461378024569	0.750789807488196	0.273620544051278	0.424357990755149	-0.0766904008123741	0.964859015901254	1
Merged-chr18-12947345-4	chr18	12947234	12947434	+	847.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5493.0	NM_207530	64291.0	Mm.259470	NM_020573	ENSMUSG00000044252	Osbpl1a	G430090F17Rik|Gm753|ORP-1|Osbpl1b	oxysterol binding protein-like 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-52231999-4	chr11	52231877	52232077	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011543)	promoter-TSS (NM_011543)	-18.0	NM_011543	21402.0	Mm.42944	NM_011543	ENSMUSG00000036309	Skp1a	15kDa|2610043E24Rik|2610206H23Rik|EMC19|OCP-II|OCP2|SKP1|Tceb1l|p19A|p19Skp1	S-phase kinase-associated protein 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-105367841-2	chr7	105367741	105367941	+	780.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146355)	promoter-TSS (NM_146355)	-487.0	NM_146355	258352.0	Mm.377449	NM_146355	ENSMUSG00000073906	Olfr692	MOR36-1	olfactory receptor 692	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-99170485-1	chr13	99170385	99170585	+	559.0	f1_balb.idr	Intergenic	Intergenic	-14338.0	NM_001004149	238803.0	Mm.343207	NM_001004149	ENSMUSG00000050919	Zfp366	DC-SCRIPT|Znf366	zinc finger protein 366	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80163241-3	chr10	80163196	80163396	+	890.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 1 of 4)	intron (NR_038088, intron 1 of 4)	-4543.0	NM_007705	12696.0	Mm.17898	NM_007705	ENSMUSG00000045193	Cirbp	Cirp|R74941	cold inducible RNA binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-23332385-3	chr16	23332294	23332494	+	669.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252505, intron 5 of 7)	L1M4c|LINE|L1	41924.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-9743412-1	chr18	9743312	9743512	+	792.0	f0_balb.idr	intron (NM_130449, intron 2 of 9)	intron (NM_130449, intron 2 of 9)	35764.0	NM_130449	140792.0	Mm.218571	NM_130449	ENSMUSG00000036103	Colec12	CL-P1|SRCL|Scara4	collectin sub-family member 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70854078-3	chr8	70854001	70854201	+	942.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_032397, intron 3 of 9)	intron (NM_032397, intron 3 of 9)	2907.0	NM_032397	84036.0	Mm.32074	NM_032397	ENSMUSG00000002908	Kcnn1	AI854248|KCa2.1|SK1	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1	protein-coding	-0.426465941929648	-0.413012283059192	-0.417412634504304	0.129349663866619	-0.425624174334604	-0.412021331983819	0.285186956140566	-0.42021819057434	0.494743600977765	0.854478008995306	1
Merged-chr5-24035118-4	chr5	24034990	24035190	+	947.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4400.0	NM_053090	84652.0	Mm.304976	NM_053090	ENSMUSG00000028995	Fam126a	AB030242|Drctnnb1a	family with sequence similarity 126, member A	protein-coding	2.45256345214304	2.45214834333498	1.60924395741562	1.5724763296089	2.39103710861495	2.47016266638016	2.14136109440687	2.51085724423636	0.671055246924275	0.452535805192557	0.91869698872066
Merged-chr9-96393901-4	chr9	96393774	96393974	+	974.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-29443.0	NM_001357212	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-57532493-4	chr10	57532394	57532594	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019760)	promoter-TSS (NM_019760)	35.0	NM_019760	56442.0	Mm.29344	NM_019760	ENSMUSG00000019877	Serinc1	1500011D18Rik|AI315070|AIGP-2|TMS-2|Tde1l|Tde2|Tms2|mKIAA1253	serine incorporator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91567623-2	chr16	91567523	91567723	+	644.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20529.0	NM_008338	15980.0	Mm.249364	NM_008338	ENSMUSG00000022965	Ifngr2	Ifgr2|Ifgt	interferon gamma receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-5102624-3	chr11	5102610	5102810	+	787.516663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177370, intron 4 of 8)	intron (NM_177370, intron 4 of 8)	2545.0	NM_001290493	279766.0	Mm.260866	NM_177370	ENSMUSG00000034175	Rhbdd3	Ptag	rhomboid domain containing 3	protein-coding	-0.917669144499627	-0.903821257067356	-0.911873293587582	-0.914055806855811	-0.440347379515377	-0.548713559252348	-0.911248583058085	-0.913674841898714	2.97922326914822	0.327602898477324	1
Merged-chr16-13257492-2	chr16	13257392	13257592	+	559.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001122667, intron 1 of 16)	intron (NM_001122667, intron 1 of 16)	1011.0	NM_001122667	239719.0	Mm.270643	NM_153588	ENSMUSG00000009569	Mkl2	Gt4-1|MRTF-B|Mrtfb|mKIAA1243	MKL/myocardin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-119817119-2	chr8	119817019	119817219	+	697.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028071, intron 3 of 3)	intron (NM_028071, intron 3 of 3)	23460.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-91457440-2	chr1	91457340	91457540	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011066, intron 1 of 22)	intron (NM_011066, intron 1 of 22)	1888.0	NM_011066	18627.0	Mm.482463	NM_011066	ENSMUSG00000055866	Per2	mKIAA0347|mPer2	period circadian clock 2	protein-coding	1.77961510425938	0.727347273334213	0.712541021092391	1.35472432116404	1.79793941637064	0.730639596679207	0.715835602658343	1.36323629471678	0.0376655821639843	0.980758221569911	0.998431161219273
Merged-chr8-70653454-4	chr8	70653372	70653572	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023217, intron 2 of 4)	intron (NM_023217, intron 2 of 4)	6266.0	NM_023217	66522.0	Mm.154906	NM_023217	ENSMUSG00000056204	Pgpep1	2810003H13Rik|Gm19458|PAP-I|PGP|PGP-I|PGPI|Pcp	pyroglutamyl-peptidase I	protein-coding	4.78429969020642	5.29666948835904	4.04377742642363	5.58455868887228	4.88586303689251	5.68966140204879	4.07676290014149	5.10313839294964	0.00937975970766996	0.982000009636348	0.998431161219273
Merged-chr7-45682905-4	chr7	45682814	45683014	+	735.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271578, intron 3 of 3)	intron (NM_001271578, intron 3 of 3)	-1108.0	NM_001358870	243967.0	Mm.291240	NM_001033356	ENSMUSG00000070564	Ntn5	Gm484	netrin 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-46249159-2	chr17	46249059	46249259	+	589.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145353, intron 2 of 8)	intron (NM_145353, intron 2 of 8)	1079.0	NM_145353	28064.0	Mm.248769	NM_145353	ENSMUSG00000071074	Yipf3	C6orf109|D17Wsu94e|KLIP1	Yip1 domain family, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116390871-3	chr11	116390772	116390972	+	663.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027258, intron 2 of 18)	IAPEz-int|LTR|ERVK	22160.0	NM_027258	217340.0	Mm.426344	NM_027258	ENSMUSG00000052949	Rnf157	2610036E23Rik|A130073L17Rik|mKIAA1917	ring finger protein 157	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45216175-2	chr7	45216075	45216275	+	588.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285498, intron 1 of 11)	intron (NM_001285498, intron 1 of 11)	422.0	NM_001285498	21677.0	Mm.3019	NM_011565	ENSMUSG00000030796	Tead2	ETEF-1|ETF|Etdf|TEAD-2|TEF-4|TEF4	TEA domain family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150515687-2	chr4	150515597	150515797	+	668.0	f0_balb.idr|f1_balb.idr	intron (NM_001085492, intron 10 of 22)	intron (NM_001085492, intron 10 of 22)	136477.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0.98210637154584	1.10675524753501	1.06855758418994	1.54417401019118	3.23740788794223	2.47536647590562	2.13105493805292	2.88522190964562	4.58451684167309	0.000254228175915512	0.00649906886640835
Merged-chr7-81176610-3	chr7	81176527	81176727	+	754.950012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A|LTR|ERVL-MaLR	-37177.0	NM_008803	18584.0	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-9027997-4	chr4	9027897	9028097	+	983.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-241296.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-142594749-4	chr3	142594644	142594844	+	988.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010259)	promoter-TSS (NM_010259)	-103.0	NM_010259	14468.0	Mm.457978	NM_010259	ENSMUSG00000040264	Gbp2b	Gbp-1|Gbp1|Mag-1|Mpa-1|Mpa1	guanylate binding protein 2b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-56259839-6	chr9	56259773	56259973	+	796.937012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172924, exon 4 of 7)	exon (NM_172924, exon 4 of 7)	-98803.0	NM_019793	56434.0	Mm.28484	NM_019793	ENSMUSG00000032324	Tspan3	1700055K04Rik|TM4-A|Tm4sf8	tetraspanin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-102408957-2	chr15	102408857	102409057	+	809.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_013672, exon 3 of 6)	exon (NM_013672, exon 3 of 6)	2641.0	NM_013672	20683.0	Mm.4618	NM_013672	ENSMUSG00000001280	Sp1	1110003E12Rik|AA450830|AI845540|Sp1-1	trans-acting transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99259763-3	chr15	99259620	99259820	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045627, intron 1 of 2)	intron (NR_045627, intron 1 of 2)	-7759.0	NM_016766	51812.0	Mm.383472	NM_016766	ENSMUSG00000037570	Mcrs1	C78274|ICP22BP|MSP58|P78	microspherule protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36571776-4	chr1	36571668	36571868	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001126046, intron 12 of 14)	intron (NM_001126046, intron 12 of 14)	-13387.0	NM_001126047	20353.0	Mm.29558	NM_001126047	ENSMUSG00000026121	Sema4c	AI426163|M-Sema F|Semacl1|Semaf|Semai|sema I	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-161251255-4	chr1	161251137	161251337	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007453)	promoter-TSS (NM_007453)	-27.0	NM_001303408	11758.0	Mm.186185	NM_007453	ENSMUSG00000026701	Prdx6	1-Cys Prx|1-cysPrx|9430088D19Rik|AA690119|Aop2|Brp-12|CP-3|GPx|Ltw-4|Ltw4|Lvtw-4|NSGPx|ORF06|Prdx5|aiPLA2	peroxiredoxin 6	protein-coding	5.12727442515952	5.72701974516291	5.54321079016532	5.12951771109359	4.9950232211844	5.4804647051881	4.16722479054687	4.17164462793058	-0.690009031342318	0.059510307155607	0.361228882338478
Merged-chr9-84343869-4	chr9	84343767	84343967	+	786.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	395086.0	NM_199195	12040.0	Mm.12819	NM_199195	ENSMUSG00000032263	Bckdhb	BCKDE1B|BCKDH E1-beta	branched chain ketoacid dehydrogenase E1, beta polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-87719386-2	chr16	87719286	87719486	+	594.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_007520, exon 3 of 5)	exon (NM_007520, exon 3 of 5)	20432.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115517671-2	chr5	115517564	115517764	+	706.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011223, intron 1 of 10)	intron (NM_011223, intron 1 of 10)	10988.0	NM_133915	19303.0	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	1.62395512408754	1.08881156796171	1.62699954471309	1.82576250611644	1.93010747654702	1.83874899482429	1.07378391244866	2.11950707432723	0.715189310474468	0.538720561931363	0.954361054540677
Merged-chr19-46563152-4	chr19	46563053	46563253	+	846.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355233, intron 1 of 6)	intron (NM_001355233, intron 1 of 6)	10029.0	NM_001355233	56350.0	Mm.22085	NM_019718	ENSMUSG00000025035	Arl3	-	ADP-ribosylation factor-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-78139856-4	chr10	78139741	78139941	+	929.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29927.0	NM_138601	28295.0	Mm.268691	NM_138601	ENSMUSG00000053329	D10Jhu81e	C21orf33|ES1	DNA segment, Chr 10, Johns Hopkins University 81 expressed	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-13606620-6	chr6	13606585	13606785	+	931.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028990, intron 1 of 4)	L2|LINE|L2	1413.0	NR_155435	101118.0	Mm.254845	NM_028990	ENSMUSG00000029569	Tmem168	5730526F17Rik|8430437G11Rik|AI462344|AI504145	transmembrane protein 168	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-11691867-4	chr11	11691775	11691975	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301863, intron 1 of 7)	intron (NM_001301863, intron 1 of 7)	1698.0	NM_001301863	22778.0	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167222288-4	chr2	167222215	167222415	+	890.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008968, intron 4 of 9)	intron (NM_008968, intron 4 of 9)	18222.0	NM_008968	19223.0	Mm.2339	NM_008968	ENSMUSG00000017969	Ptgis	Cyp8|Cyp8a1|Pgis	prostaglandin I2 (prostacyclin) synthase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-51930131-4	chr16	51930125	51930325	+	992.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57062.0	NR_153657	629091.0	Mm.364775	NR_153657		Gm29686	-	predicted gene, 29686	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-33377791-2	chr5	33377691	33377891	+	867.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081101)	promoter-TSS (NM_001081101)	-905.0	NR_153108	71101.0	Mm.132178	NM_027674	ENSMUSG00000037355	Uvssa	4933407H18Rik|D330017J19Rik|Kiaa1530|mKIAA1530	UV stimulated scaffold protein A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-4836933-2	chr11	4836804	4837004	+	866.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_010898, intron 1 of 15)	intron (NM_010898, intron 1 of 15)	-3769.0	NM_001252253	18016.0	Mm.297109	NM_010898	ENSMUSG00000009073	Nf2	merlin	neurofibromin 2	protein-coding	1.83828735777832	2.51086475263993	1.24942360291846	1.93462193363018	1.96790890677193	2.07377201594506	2.44384089819702	1.80583418418703	0.330391478584969	0.737916631372378	0.998431161219273
Merged-chr2-85037179-4	chr2	85037076	85037276	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001136081)	promoter-TSS (NM_001136081)	56.0	NM_182990	20833.0	Mm.219793	NM_182990	ENSMUSG00000027067	Ssrp1	C81323|Hmg1-rs1|Hmgi-rs3|Hmgox|T160	structure specific recognition protein 1	protein-coding	3.52081834129212	4.30861760542134	4.74448693900764	3.14153351692265	4.19741744770256	4.45558267812837	4.69740986164445	4.07771086397089	0.404394624836417	0.399392537733351	0.885176145862419
Merged-chr3-84853000-3	chr3	84852903	84853103	+	715.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177773, intron 1 of 13)	ORR1E|LTR|ERVL-MaLR	-11142.0	NM_001177774	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	1.36066576950837	0.993879233273925	0.594718444309095	1.45794357215273	1.10996127468379	0.824268854667663	0.597038237857465	0.58798784454633	-1.66806064686206	0.29411987989699	0.798191705447
Merged-chr5-118633257-4	chr5	118633162	118633362	+	964.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347445, intron 2 of 30)	intron (NM_001347445, intron 2 of 30)	72543.0	NM_172424	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	1.89414594279982	1.23706039125778	1.62976607840148	1.87654744320614	2.40296710722512	1.86318329170909	1.80368684383804	2.38007973242072	1.28977790647784	0.199904717164282	0.683580694433892
Merged-chr3-31089212-4	chr3	31089082	31089282	+	801.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5876.0	NM_001039090	20482.0	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-50944133-3	chr14	50944035	50944235	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr	promoter-TSS (NM_013632)	promoter-TSS (NM_013632)	-168.0	NM_013632	18950.0	Mm.17932	NM_013632	ENSMUSG00000115338	Pnp	AL024301|AU015798|Np|Np-1|Np-2|Pnp1	purine-nucleoside phosphorylase	protein-coding	4.74761274762521	2.97899027542984	4.09875140335274	4.56732576145682	4.90048914874698	4.2693092954443	4.76256439771201	4.78670490329754	0.55649864481699	0.208982176654827	0.698371420334047
Merged-chr5-18037496-2	chr5	18037396	18037596	+	820.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	74926.0	NM_001081143	242851.0	Mm.332230	NM_001081143	ENSMUSG00000028777	Gnat3	Ggust|Gtn	guanine nucleotide binding protein, alpha transducing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-8718515-4	chr19	8718409	8718609	+	997.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161413, intron 1 of 9)	intron (NM_001161413, intron 1 of 9)	-4612.0	NM_008577	17254.0	Mm.4114	NM_008577	ENSMUSG00000010095	Slc3a2	4F2|4F2HC|AI314110|Cd98|Ly-10|Ly-m10|Ly10|Mdu1|Mgp-2hc|NACAE	solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-56354020-1	chr13	56353920	56354120	+	784.5	f0_balb.idr	Intergenic	Intergenic	-8880.0	NR_046061	100038494.0	Mm.370447	NR_046061	ENSMUSG00000074885	Gm10782	-	predicted gene 10782	ncRNA	3.21638554005168	1.55031223426474	1.19136623550757	1.15396743979019	3.24348067250406	1.24696942087519	3.09255081251856	2.91857101373342	1.29449152159218	0.50030077414228	0.938059363548374
Merged-chr7-122261756-3	chr7	122261654	122261854	+	805.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27371.0	NM_001316672	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-63966548-4	chr5	63966467	63966667	+	871.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145923, intron 1 of 6)	intron (NM_145923, intron 1 of 6)	2330.0	NM_145923	100532.0	Mm.243632	NM_145923	ENSMUSG00000047881	Rell1	AA536743	RELT-like 1	protein-coding	1.94477500290185	3.19876700523037	2.36647124687001	1.90307404278084	1.66066361990237	2.20289322734347	2.26429410684414	1.91284268588954	-1.0242019381367	0.252809316478462	0.750174652706164
Merged-chr5-101907497-2	chr5	101907397	101907597	+	550.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_172882, exon 29 of 67)	exon (NM_172882, exon 29 of 67)	142367.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132347047-2	chr4	132346991	132347191	+	639.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	-1341.0	NM_133878	100088.0	Mm.255045	NM_133878	ENSMUSG00000028896	Rcc1	4931417M11Rik|AI326872|Chc1	regulator of chromosome condensation 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-62229973-4	chr18	62229872	62230072	+	973.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49872.0	NM_001013754	225609.0	Mm.296917	NM_001013754	ENSMUSG00000054589	Gm9949	EG225609	predicted gene 9949	protein-coding	0.269065554211662	0.847771187548555	0.00629702650686434	0.171273174145909	0.389188304391563	0.0134210311403415	0.00758076250697673	0.00258699456448483	-1.8823112826424	0.370722373316206	1
Merged-chr5-18012113-2	chr5	18012013	18012213	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081143, intron 5 of 7)	intron (NM_001081143, intron 5 of 7)	49543.0	NM_001081143	242851.0	Mm.332230	NM_001081143	ENSMUSG00000028777	Gnat3	Ggust|Gtn	guanine nucleotide binding protein, alpha transducing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-81983790-4	chr3	81983703	81983903	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-8075.0	NM_019911	56720.0	Mm.258622	NM_019911	ENSMUSG00000028011	Tdo2	AA407491|TDO|TO|chky	tryptophan 2,3-dioxygenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-91685138-4	chr6	91685041	91685241	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009320, intron 1 of 14)	intron (NM_009320, intron 1 of 14)	1074.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-129433520-2	chr6	129433421	129433621	+	761.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_175526, intron 3 of 5)	intron (NM_175526, intron 3 of 5)	18479.0	NM_001347475	243653.0	Mm.131289	NM_175526	ENSMUSG00000033082	Clec1a	5930406N14Rik	C-type lectin domain family 1, member a	protein-coding	-1.58994551673671	-1.55912852307891	-1.56844783632235	-1.57610299769523	-1.18549093183599	-1.55710898902261	-1.56633814807757	-1.57473272746952	1.78703309985663	0.610309988231842	1
Merged-chr2-128782392-4	chr2	128782273	128782473	+	977.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 13 of 18)	intron (NM_008587, intron 13 of 18)	-35930.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	-0.8140108141538	-0.612818697813291	-0.245677334745202	-0.81016631918406	-0.669031377240467	-0.802256515167543	-0.807179246992097	-0.80976096189792	-2.12758409443454	0.447183760039482	1
Merged-chr8-126572495-4	chr8	126572376	126572576	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20960.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	5.91668105034682	5.83538938852796	6.19893466709335	5.25223833085428	6.0184133551796	5.87099721058169	6.23653395258027	5.2442445161691	0.0527959540719159	0.853274342645829	0.998431161219273
Merged-chr4-126126937-4	chr4	126126801	126127001	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028800, intron 4 of 10)	intron (NM_028800, intron 4 of 10)	-21102.0	NM_172145	230752.0	Mm.41569	NM_172145	ENSMUSG00000050212	Eva1b	2610027C15Rik|Fam176b	eva-1 homolog B (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-24298413-4	chr9	24298323	24298523	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175678, intron 6 of 9)	ORR1E|LTR|ERVL-MaLR	200405.0	NM_175678	319239.0	Mm.130824	NM_175678	ENSMUSG00000043659	Npsr1	9330128H10Rik|GPRA|Gpr154|MVTR|PGR14|VRR1	neuropeptide S receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-3148537-4	chr11	3148442	3148642	+	991.25	f0_balb.idr|f1_balb.idr	intron (NM_030207, intron 14 of 32)	intron (NM_030207, intron 14 of 32)	24521.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-4544524-4	chr11	4544468	4544668	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028860, intron 1 of 17)	B2_Mm2|SINE|B2	50247.0	NM_028860	74302.0	Mm.425669	NM_028860	ENSMUSG00000034354	Mtmr3	1700092A20Rik|AI255150|AW557713|FYVE-DSP1|ZFYVE10|mKIAA0371	myotubularin related protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-43744324-2	chr9	43744224	43744424	+	809.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021424)	promoter-TSS (NM_021424)	-252.0	NM_021424	58235.0	Mm.335096	NM_021424	ENSMUSG00000032012	Nectin1	AI835281|AW549174|Cd111|HIgR|HveC|PRR|PRR1|Pvrl1|nectin-1	nectin cell adhesion molecule 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-129008040-4	chr5	129007972	129008172	+	870.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152615, intron 1 of 11)	intron (NR_152615, intron 1 of 11)	500.0	NR_152615	13852.0	Mm.260716	NM_007941	ENSMUSG00000029428	Stx2	AW538950|Epim|G1-536-1|Syn-2|repro34	syntaxin 2	protein-coding	0.203099717649987	0.0941845662981794	0.583748218557965	0.457640086558712	0.0825416416544238	0.411029012912602	0.0909751909355549	0.230230095697718	-1.25253483483687	0.52897216962481	1
Merged-chr11-106134869-4	chr11	106134769	106134969	+	997.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011947, intron 6 of 15)	intron (NM_011947, intron 6 of 15)	25058.0	NM_001356459	67803.0	Mm.21687	NM_172397	ENSMUSG00000040699	Limd2	0610025L06Rik|AI413966	LIM domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36073825-3	chr1	36073729	36073929	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015818, intron 1 of 1)	intron (NM_015818, intron 1 of 1)	5429.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-57233970-2	chr17	57233870	57234070	+	574.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001308074)	TTS (NM_001308074)	-5834.0	NM_009778	12266.0	Mm.19131	NM_009778	ENSMUSG00000024164	C3	AI255234|ASP|HSE-MSF|Plp	complement component 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-149051865-8	chr5	149051697	149051897	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001313894)	promoter-TSS (NM_001313894)	-181.0	NM_001313894	15289.0	Mm.207047	NM_010439	ENSMUSG00000066551	Hmgb1	HMG-1|Hmg1|SBP-1|p30	high mobility group box 1	protein-coding	4.12975793110954	3.21037800892946	4.24735329637893	4.69165020362444	3.96572008819748	3.69249693257004	4.33161271945601	3.78185900196325	-0.285841824281489	0.550820029132515	0.958992750730181
Merged-chr19-4400051-2	chr19	4399951	4400151	+	593.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-2974.0	NM_001001984	225876.0	Mm.31941	NM_001001984	ENSMUSG00000054611	Kdm2a	100043628|5530401A10Rik|AA589516|AW536790|Cxxc8|Fbl11|Fbl7|Fbxl11|Gm4560|Jhdm1|Jhdm1a|lalina	lysine (K)-specific demethylase 2A	protein-coding	0.290279495708371	1.03139204342267	1.19158970052717	0.303518844649518	0.292267565693413	0.323612973713815	1.20678742943942	0.304895438912565	-0.769132633949184	0.693467023818977	1
Merged-chr16-90186296-6	chr16	90186149	90186349	+	878.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34493.0	NM_011434	20655.0	Mm.276325	NM_011434	ENSMUSG00000022982	Sod1	B430204E11Rik|Cu/Zn-SOD|CuZnSOD|Ipo-1|Ipo1|SODC|Sod-1	superoxide dismutase 1, soluble	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-18425880-3	chr16	18425791	18425991	+	886.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013711)	promoter-TSS (NM_013711)	-526.0	NM_001353143	26462.0	Mm.390906	NM_013711	ENSMUSG00000075704	Txnrd2	AA118373|ESTM573010|TGR|Tr3|Trxr2|Trxrd2	thioredoxin reductase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-54547745-4	chr9	54547679	54547879	+	648.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019686, intron 4 of 5)	intron (NM_019686, intron 4 of 5)	8795.0	NM_173778	244885.0	Mm.358924	NM_173778	ENSMUSG00000046460	Sh2d7	4933412E14Rik	SH2 domain containing 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125426593-4	chr6	125426508	125426708	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46104.0	NM_198604	213522.0	Mm.333396	NM_198604	ENSMUSG00000038167	Plekhg6	BC026778|Gm155	pleckstrin homology domain containing, family G (with RhoGef domain) member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-154062044-3	chr1	154061926	154062126	+	765.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-139161.0	NM_001204908	100503355.0	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	Gm10178|Gm203	zinc finger protein 648	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-37002266-4	chr1	37002175	37002375	+	801.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-62748.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123463845-1	chr5	123463745	123463945	+	631.0	f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	18256.0	NM_029594	76399.0	Mm.75049	NM_029594	ENSMUSG00000029437	Il31	1700013B14Rik	interleukin 31	protein-coding	0.711920392959086	0.810359541824469	0.0624375619161173	0.0576572069859789	0.203566138542238	0.274163317320181	0.0638017928518413	0.0584932562635158	-2.43726155646769	0.245113469873077	1
Merged-chr17-44261959-1	chr17	44261859	44262059	+	741.0	f0_balb.idr	intron (NM_172621, intron 4 of 5)	intron (NM_172621, intron 4 of 5)	73387.0	NM_172621	224796.0	Mm.37666	NM_172621	ENSMUSG00000023959	Clic5	5730531E12Rik|B330005L24|Gm322|jbg|nmf318	chloride intracellular channel 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-121125971-2	chr5	121125871	121126071	+	651.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	65426.0	NM_001109992	19247.0	Mm.8681	NM_011202	ENSMUSG00000043733	Ptpn11	2700084A17Rik|AW536184|PTP1D|PTP2C|SAP-2|SH-PTP2|SH-PTP3|SHP-2|Shp2|Syp	protein tyrosine phosphatase, non-receptor type 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-101696574-2	chr13	101696474	101696674	+	938.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077495, intron 7 of 15)	intron (NM_001077495, intron 7 of 15)	-3944.0	NM_001024955	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-49425794-4	chr2	49425684	49425884	+	813.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	-25702.0	NM_172663	227867.0	Mm.29167	NM_172663	ENSMUSG00000069495	Epc2	5830499L14|D2Ertd694e	enhancer of polycomb homolog 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76973962-2	chr15	76973862	76974062	+	695.299988	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25701.0	NM_001347540	117171.0	Mm.322968	NM_054099	ENSMUSG00000063236	1110038F14Rik	-	RIKEN cDNA 1110038F14 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-103053305-1	chr15	103053205	103053405	+	568.0	f1_balb.idr	Intergenic	Intergenic	18910.0	NM_013553	15423.0	Mm.1351	NM_013553	ENSMUSG00000075394	Hoxc4	Hox-3.5	homeobox C4	protein-coding	-0.0412926396602563	-0.0169136644891968	-0.0247850278276183	-0.0309332274310234	0.287107486906602	-0.0151540213020806	0.369581313252415	1.19735926466807	4.32200939547927	0.0370325988196008	1
Merged-chr10-52382133-4	chr10	52382047	52382247	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199272)	promoter-TSS (NM_001199272)	-23.0	NM_001199272	94221.0	Mm.390258	NM_053187	ENSMUSG00000019861	Gopc	2210402P09Rik|AI844555|CAL|FIG|GOPC1|PIST	golgi associated PDZ and coiled-coil motif containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-174675864-4	chr2	174675762	174675962	+	929.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001099328, intron 3 of 4)	intron (NM_001099328, intron 3 of 4)	32328.0	NM_001099328	100043757.0	Mm.48711	NM_001099328	ENSMUSG00000050600	Zfp831	-	zinc finger protein 831	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123142983-4	chr5	123142871	123143071	+	858.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001040398, exon 2 of 17)	exon (NM_001040398, exon 2 of 17)	778.0	NM_001040398	208043.0	Mm.250391	NM_177581	ENSMUSG00000038384	Setd1b	AA516740|BC035291|KMT2G|mKIAA1076	SET domain containing 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100325214-4	chr11	100325059	100325259	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5210.0	NM_011508	20918.0	Mm.13886	NM_011508	ENSMUSG00000035530	Eif1	Sui1-rs1	eukaryotic translation initiation factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-52854193-2	chr1	52854093	52854293	+	707.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_146108, intron 2 of 13)	B3|SINE|B2	9155.0	NM_146108	227095.0	Mm.222063	NM_146108	ENSMUSG00000041426	Hibch	2610509I15Rik|HIBYL-COA-H	3-hydroxyisobutyryl-Coenzyme A hydrolase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-26158775-4	chr8	26158676	26158876	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199042, intron 1 of 2)	CpG	607.0	NM_199042	73754.0	Mm.383241	NM_199042	ENSMUSG00000037214	Thap1	4833431A01Rik|AW490810	THAP domain containing, apoptosis associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166235092-4	chr2	166234993	166235193	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38815.0	NR_033467	670775.0	Mm.384326	NR_033467	ENSMUSG00000084840	Gm11468	-	predicted gene 11468	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-103343659-4	chr12	103343559	103343759	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023049, intron 2 of 9)	intron (NM_023049, intron 2 of 9)	12342.0	NM_023049	65256.0	Mm.27159	NM_023049	ENSMUSG00000021200	Asb2	1110008E15Rik	ankyrin repeat and SOCS box-containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133341865-1	chr4	133341765	133341965	+	888.0	f1_balb.idr	Intergenic	MTD|LTR|ERVL-MaLR	-2550.0	NM_199306	230796.0	Mm.226576	NM_199306	ENSMUSG00000037622	Wdtc1	Gm695|adipose|adp	WD and tetratricopeptide repeats 1	protein-coding	-0.175243940753755	-0.152351388635305	-0.159738491319351	0.467554270588854	-0.17378400267229	-0.150700614015289	1.00674752113186	-0.164498148584976	1.34324660455613	0.570889983095519	1
Merged-chr5-150233595-6	chr5	150233480	150233680	+	929.861084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26350.0	NM_172887	320365.0	Mm.216590	NM_172887	ENSMUSG00000056602	Fry	13CDNA73|9330186A19Rik|AF346502|AI462658|C87180|D930046M03|cg003|mKIAA4143	FRY microtubule binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-129940153-2	chr5	129940053	129940253	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-1956.0	NM_001001327	69568.0	Mm.288718	NM_027121	ENSMUSG00000066735	Vkorc1l1	2310024K08Rik	vitamin K epoxide reductase complex, subunit 1-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-29805192-4	chr19	29805091	29805291	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172836, intron 1 of 7)	CpG	818.0	NM_172836	240613.0	Mm.313351	NM_172836	ENSMUSG00000046138	9930021J03Rik	Gm9832|mKIAA2026	RIKEN cDNA 9930021J03 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-149184443-4	chr5	149184331	149184531	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286825)	promoter-TSS (NM_001286825)	-129.0	NM_001115153	231915.0	Mm.29402	NM_001013378	ENSMUSG00000041264	Uspl1	E430026A01Rik	ubiquitin specific peptidase like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-47080960-4	chr7	47080860	47081060	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163565, intron 11 of 13)	intron (NM_001163565, intron 11 of 13)	2264.0	NR_106023	102465639.0		NR_106023	ENSMUSG00000098960	Mir7056	Gm27696|mmu-mir-7056	microRNA 7056	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-129406215-4	chr6	129406119	129406319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001204239)	TTS (NM_001204239)	-2643.0	NM_001205363	232414.0	Mm.391518	NM_172732	ENSMUSG00000046080	Clec9a	9830005G06Rik|DNGR-1	C-type lectin domain family 9, member a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-29006985-4	chr17	29006881	29007081	+	901.9208369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357173, intron 1 of 13)	intron (NM_001357173, intron 1 of 13)	1014.0	NM_134115	106504.0	Mm.439986	NM_134115	ENSMUSG00000024006	Stk38	5830476G13Rik|9530097A09Rik|AA617404|Ndr1	serine/threonine kinase 38	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-22710880-4	chr11	22710780	22710980	+	886.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C-int|LTR|ERVK	148855.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120825795-2	chr11	120825695	120825895	+	844.5714109999999	f1_balb.idr|f1_c57bl6.idr	TTS (NM_027745)	TTS (NM_027745)	-1248.0	NM_007988	14104.0	Mm.236443	NM_007988	ENSMUSG00000025153	Fasn	A630082H08Rik|FAS	fatty acid synthase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118760612-1	chr11	118760512	118760712	+	649.0	f1_c57bl6.idr	intron (NM_001024931, intron 2 of 14)	intron (NM_001024931, intron 2 of 14)	429.0	NM_001285438	52897.0	Mm.341103	NM_001024931	ENSMUSG00000025576	Rbfox3	Fox-3|Hrnbp3|NeuN|Neuna60	RNA binding protein, fox-1 homolog (C. elegans) 3	protein-coding	0.798943818858112	0.145513290511737	0.840715431750848	0.133444426781494	0.125959936499477	0.672221207674428	0.140216667254489	0.134366582243143	-1.51764321232249	0.477161606404164	1
Merged-chr7-66134378-4	chr7	66134281	66134481	+	995.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081163, intron 2 of 2)	intron (NM_001081163, intron 2 of 2)	24866.0	NM_001081163	269941.0	Mm.333916	NM_001081163	ENSMUSG00000032640	Chsy1	mKIAA0990	chondroitin sulfate synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-16984741-2	chr11	16984641	16984841	+	559.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_019549, intron 7 of 9)	RMER13B|LTR|ERVK	23977.0	NM_019549	56193.0	Mm.98232	NM_019549	ENSMUSG00000020120	Plek	2010300B13Rik	pleckstrin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27558901-2	chr17	27558801	27559001	+	886.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039356, intron 2 of 5)	intron (NM_001039356, intron 2 of 5)	2248.0	NM_001166477	111241.0	Mm.426212	NM_001166476	ENSMUSG00000078249	Hmga1b	Hmga1-rs1|Hmgi-rs1	high mobility group AT-hook 1B	protein-coding	-0.394045401044641	-0.381965539120462	-0.385932470248029	-0.388986853916504	-0.393293857362737	0.111223268981734	-0.207784386284036	0.140496336323033	3.566823324039	0.149125229463106	1
Merged-chr7-97107626-2	chr7	97107526	97107726	+	692.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162477, intron 1 of 9)	intron (NM_001162477, intron 1 of 9)	25875.0	NM_010248	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-84913832-2	chr11	84913732	84913932	+	552.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359182, intron 3 of 4)	intron (NM_001359182, intron 3 of 4)	2534.0	NM_001359182	448850.0	Mm.379733	NM_001005223	ENSMUSG00000020526	Znhit3	Myohd1|TRIP-3|Trip3	zinc finger, HIT type 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-17448871-4	chr17	17448774	17448974	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025681, intron 4 of 5)	intron (NM_025681, intron 4 of 5)	46188.0	NM_025681	66643.0	Mm.268018	NM_025681	ENSMUSG00000047786	Lix1	5730466L18Rik	limb and CNS expressed 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-5506449-2	chr6	5506349	5506549	+	922.125	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10171.0	NM_013743	27273.0	Mm.235547	NM_013743	ENSMUSG00000019577	Pdk4	AV005916	pyruvate dehydrogenase kinase, isoenzyme 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-11419868-4	chr8	11419788	11419988	+	898.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009932, intron 20 of 47)	intron (NM_009932, intron 20 of 47)	-58041.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-57906845-4	chr15	57906735	57906935	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5364.0	NM_001081396	210544.0	Mm.390835	NM_199300	ENSMUSG00000022364	Tbc1d31	4B3|D330013L20Rik|Gm85|Wdr67	TBC1 domain family, member 31	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-37508174-4	chr19	37508073	37508273	+	919.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42245.0	NM_175353	107371.0	Mm.24865	NM_175353	ENSMUSG00000053799	Exoc6	4833405E05Rik|AW413330|C430002C19|Sec15|Sec15l1|hbd|msec15	exocyst complex component 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-90828283-1	chr8	90828183	90828383	+	540.0	f1_c57bl6.idr	promoter-TSS (NM_177224)	promoter-TSS (NM_177224)	-552.0	NM_177224	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	0.765699803942489	0.510705254829427	0.97687826025813	0.940876109316346	0.888743150719794	0.512643567089858	0.503982836882538	1.3348587821269	0.291965618688129	0.858794126109862	1
Merged-chr14-56884499-2	chr14	56884399	56884599	+	563.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2104.0	NM_177627	76007.0	Mm.31417	NM_029498	ENSMUSG00000021945	Zmym2	5830413P05Rik|FIM|MYM|RAMP|SCLL|Zfp198|Znf198	zinc finger, MYM-type 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-50215881-2	chr11	50215781	50215981	+	583.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5061.0	NM_011018	18412.0	Mm.40828	NM_011018	ENSMUSG00000015837	Sqstm1	A170|OSF-6|Osi|STAP|STONE14|p62	sequestosome 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-8640118-2	chr15	8640018	8640218	+	887.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_148938, intron 8 of 9)	MLT1J|LTR|ERVL-MaLR	70689.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-6637090-2	chr17	6636990	6637190	+	700.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16165.0	NR_028305	100040525.0	Mm.472852	NR_028305		Tmem181c-ps	100040596|Tmem181d-ps	transmembrane protein 181C, pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-123903349-2	chr4	123903249	123903449	+	682.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1664.0	NM_019660	56309.0	Mm.446553	NM_019660	ENSMUSG00000028647	Mycbp	5730488M09Rik|AW552132|AW742590|Amy-1	MYC binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-148804059-4	chr3	148803961	148804161	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	150574.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-52618751-3	chr12	52618627	52618827	+	608.888855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-16405.0	NR_045910	73278.0	Mm.396209	NR_045910	ENSMUSG00000100315	1700031P21Rik	-	RIKEN cDNA 1700031P21 gene	ncRNA	0.786124746770086	-0.00868794548918395	-0.0146257566819603	-0.0192213077256828	0.652520021855645	-0.00735226547901124	0.175687922925974	-0.0184175441155768	-0.0889023087521157	0.96839883573494	1
Merged-chr19-53529043-4	chr19	53528932	53529132	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001085390)	promoter-TSS (NM_001085390)	-286.0	NM_001085390	240672.0	Mm.482424	NM_001085390	ENSMUSG00000034765	Dusp5	Gm337	dual specificity phosphatase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-113438319-2	chr13	113438219	113438419	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	64525.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-7037419-3	chr10	7037319	7037519	+	874.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001302795, exon 6 of 6)	3' UTR (NM_001302795, exon 6 of 6)	-14234.0	NM_001033391	320495.0	Mm.331674	NM_001033391	ENSMUSG00000064065	Ipcef1	A130090K04Rik	interaction protein for cytohesin exchange factors 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-106420857-2	chr9	106420823	106421023	+	647.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8488.0	NM_001324533	19944.0	Mm.288696	NM_009082	ENSMUSG00000048758	Rpl29	Rpl43	ribosomal protein L29	protein-coding	1.65147708163182	1.07223237428137	1.0486713496226	2.33008651149796	2.41599817788074	1.88254762939563	1.81520970698966	1.26424552336523	0.699047212220709	0.554464173289427	0.959914380895535
Merged-chr2-62648808-4	chr2	62648706	62648906	+	928.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2551.0	NM_001164477	71586.0	Mm.136224	NM_027835	ENSMUSG00000026896	Ifih1	9130009C22Rik|Helicard|Hlcd|MDA5|RLR-2	interferon induced with helicase C domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-72215147-4	chr11	72215055	72215255	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163728)	promoter-TSS (NM_001163728)	17.0	NM_001163728	75304.0	Mm.340776	NM_001163728		4930563E22Rik	-	RIKEN cDNA 4930563E22 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141060686-4	chr4	141060588	141060788	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145958)	promoter-TSS (NM_001145958)	-143.0	NM_001145958	230872.0	Mm.80685	NM_172122	ENSMUSG00000040860	Crocc	-	ciliary rootlet coiled-coil, rootletin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-84345576-3	chr3	84345481	84345681	+	885.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34340.0	NR_040752	75309.0	Mm.159497	NR_040752	ENSMUSG00000104004	4930565D16Rik	-	RIKEN cDNA 4930565D16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116032746-2	chr11	116032646	116032846	+	724.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286006, intron 1 of 15)	B3|SINE|B2	2430.0	NM_172569	217331.0	Mm.297706	NM_172569	ENSMUSG00000020770	Unk	B230379M23Rik|Unkh|Zc3h5|Zc3hdc5|mKIAA1753	unkempt family zinc finger	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-40577366-4	chr9	40577252	40577452	+	966.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45969.0	NM_001357617	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	3.66616328585866	3.53373566474866	3.32665454874689	1.65108189957828	4.13420080483294	3.37129463146874	3.5247199514317	3.3355975345922	0.601979095205541	0.359940629326619	0.856306289008338
Merged-chr6-116666280-4	chr6	116666189	116666389	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178045, intron 1 of 10)	L1MA4|LINE|L1	7547.0	NM_178045	213391.0	Mm.257931	NM_178045	ENSMUSG00000042129	Rassf4	3830411C14Rik|AD037|AI586137	Ras association (RalGDS/AF-6) domain family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-76378708-2	chr12	76378608	76378808	+	825.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178744, intron 1 of 1)	ID_B1|SINE|B4	8442.0	NM_178744	268564.0	Mm.77065	NM_178744	ENSMUSG00000033454	Zbtb1	9430077A12|AI256369|Bsg2|C430003J21Rik	zinc finger and BTB domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19822783-4	chr7	19822682	19822882	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033601)	promoter-TSS (NM_033601)	-27.0	NM_033601	12051.0	Mm.439658	NM_033601	ENSMUSG00000053175	Bcl3	AI528691|Bcl-3	B cell leukemia/lymphoma 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-72656031-2	chr10	72655931	72656131	+	744.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001293684, exon 2 of 8)	exon (NM_001293684, exon 2 of 8)	1185.0	NM_001293683	52696.0	Mm.62876	NM_025635	ENSMUSG00000019923	Zwint	2010007E07Rik|2600001N01Rik|D10Ertd749e|Zwint-1	ZW10 interactor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-32093812-4	chr14	32093641	32093841	+	831.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145460, intron 3 of 7)	intron (NM_145460, intron 3 of 7)	8013.0	NM_145460	218885.0	Mm.202257	NM_145460	ENSMUSG00000021906	Oxnad1	2410002F01Rik|AW492292|BC019806	oxidoreductase NAD-binding domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-71253560-2	chr11	71253460	71253660	+	984.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_027858, intron 7 of 12)	intron (NR_027858, intron 7 of 12)	-22827.0	NM_001040696	637515.0	Mm.390402	NM_001039680	ENSMUSG00000070390	Nlrp1b	Nalp1b	NLR family, pyrin domain containing 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-4279544-2	chr12	4279444	4279644	+	733.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010881, intron 13 of 22)	B1F|SINE|Alu	45517.0	NM_001204912	69709.0	Mm.250552	NM_001204912	ENSMUSG00000096199	Ptrhd1	2410017P09Rik	peptidyl-tRNA hydrolase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36454498-4	chr18	36454378	36454578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026027)	promoter-TSS (NM_026027)	17.0	NM_026027	67199.0	Mm.30184	NM_026027	ENSMUSG00000024346	Pfdn1	2700086I23Rik|AA408327|AU044714	prefoldin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-107249222-2	chr3	107249122	107249322	+	578.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9515.0	NM_001044382	246691.0	Mm.437416	NM_001044382	ENSMUSG00000070368	Prok1	EG-VEGF	prokineticin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-83231366-1	chr4	83231266	83231466	+	541.0	f1_balb.idr	intron (NM_027238, intron 18 of 19)	intron (NM_027238, intron 18 of 19)	92823.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	0.831506338249627	1.91808701046548	1.84135682136124	1.12019465840794	0.837089058261233	2.27877421374578	2.51746028567173	0.871696925849609	0.918681453764427	0.488368413152248	0.933453007555711
Merged-chr10-94562399-2	chr10	94562299	94562499	+	604.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359760, intron 1 of 3)	intron (NM_001359760, intron 1 of 3)	11479.0	NM_001359760	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-54287256-1	chr6	54287156	54287356	+	593.0	f1_balb.idr	intron (NM_001163640, intron 8 of 12)	intron (NM_001163640, intron 8 of 12)	14434.0	NM_023543	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	-0.849540347160918	-0.83791883826935	-0.842874229298225	-0.845379854937529	-0.567718301155892	-0.197178340663439	-0.842158039317344	-0.844942093372508	3.16182143622335	0.281564155371618	1
Merged-chr1-185204060-4	chr1	185203946	185204146	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163754)	promoter-TSS (NM_001163754)	-122.0	NM_001163754	98732.0	Mm.275841	NM_172649	ENSMUSG00000039318	Rab3gap2	1110059F07Rik|2010002H18Rik|5830469C09|AI851069|AW743433|RAB3-GAP150|mKIAA0839	RAB3 GTPase activating protein subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-55598204-4	chr4	55598091	55598291	+	899.1416630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65716.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-31092728-2	chr3	31092628	31092828	+	759.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2330.0	NM_001039090	20482.0	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59785809-2	chr15	59785709	59785909	+	777.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9150.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-29841046-4	chr5	29840933	29841133	+	955.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-105097.0	NR_028426	332993.0	Mm.473746	NR_028426		Gm5129	EG332993	predicted gene 5129	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-96859753-2	chr11	96859651	96859851	+	766.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_019877, intron 8 of 8)	B1_Mus1|SINE|Alu	9358.0	NR_029562	387170.0		NR_029562	ENSMUSG00000065515	Mir152	Mirn152|mir-152|mmu-mir-152	microRNA 152	ncRNA	-0.602069997995363	-0.834977928508401	-0.677053310513924	-0.691080071580342	-0.596258686248675	-0.832453862380298	-0.838136658173709	-0.840247899762566	-0.953288078301776	0.725288159601947	1
Merged-chr7-127770823-3	chr7	127770684	127770884	+	937.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198424, intron 1 of 1)	intron (NM_198424, intron 1 of 1)	969.0	NM_198424	269999.0	Mm.36852	NM_198424	ENSMUSG00000043964	Orai3	9930124N15|BC061259|Tmem142c	ORAI calcium release-activated calcium modulator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-65490636-4	chr18	65490633	65490833	+	971.142883	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_105742, intron 3 of 6)	intron (NR_105742, intron 3 of 6)	59736.0	NM_172833	240354.0	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	1.36129407808953	1.52673010422983	2.04579786555867	2.8491458840089	1.88969304726706	2.64305174962445	1.21097384722214	3.048984232086	0.616360612925493	0.55164671191987	0.959312344950351
Merged-chr16-50754247-2	chr16	50754147	50754347	+	543.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21474.0	NR_028300	68190.0	Mm.139089	NR_028300		Dubr	5330426P16Rik|Dum	Dppa2 upstream binding RNA	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-100636979-4	chr5	100636873	100637073	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37283.0	NM_027978	71883.0	Mm.260661	NM_027978	ENSMUSG00000029319	Coq2	2310002F18Rik|PHB:PPT	coenzyme Q2 4-hydroxybenzoate polyprenyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118699965-2	chr9	118699829	118700029	+	729.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 15 of 27)	intron (NM_133721, intron 15 of 27)	-11763.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70770697-3	chr8	70770608	70770808	+	890.444458	f1_balb.idr|f1_c57bl6.idr	exon (NM_008841, exon 10 of 16)	exon (NM_008841, exon 10 of 16)	-4045.0	NM_023065	65972.0	Mm.30241	NM_023065		Ifi30	GILT|IP30	interferon gamma inducible protein 30	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106076504-4	chr11	106076402	106076602	+	965.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8400.0	NM_011947	26406.0	Mm.27041	NM_011947	ENSMUSG00000020700	Map3k3	AW548911|MAPKKK3|Mekk3|mKIAA4031	mitogen-activated protein kinase kinase kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-112731336-2	chr12	112731236	112731436	+	820.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001024602, intron 2 of 18)	intron (NM_001024602, intron 2 of 18)	-1986.0	NR_105905	102466989.0		NR_105905	ENSMUSG00000099165	Mir6940	Gm27655|mmu-mir-6940	microRNA 6940	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-72858403-4	chr17	72858304	72858504	+	816.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20356.0	NM_001357371	383295.0	Mm.277533	NM_027166	ENSMUSG00000039770	Ypel5	2310076K21Rik|CGI-127	yippee like 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-119832468-3	chr8	119832387	119832587	+	889.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028071, intron 2 of 3)	MIR|SINE|MIR	8092.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-31634980-4	chr18	31634878	31635078	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357555)	promoter-TSS (NM_001357555)	-150.0	NM_001357555	269003.0	Mm.194538	NM_172965	ENSMUSG00000024260	Sap130	2610304F09Rik|6720406D06	Sin3A associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-32509806-3	chr14	32509731	32509931	+	673.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3690.0	NM_001081221	319955.0	Mm.318310	NM_001081221	ENSMUSG00000054051	Ercc6	4732403I04|C130058G22Rik|CSB	excision repair cross-complementing rodent repair deficiency, complementation group 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-18023014-4	chr10	18022912	18023112	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359560)	promoter-TSS (NM_001359560)	78.0	NM_001359560	73112.0	Mm.276041	NM_028440	ENSMUSG00000078453	Abracl	1700028I04Rik|3110003A17Rik	ABRA C-terminal like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-45270764-3	chr2	45270664	45270864	+	875.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-153322.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-45167628-2	chr14	45167528	45167728	+	614.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310534, intron 9 of 20)	(TG)n|Simple_repeat|Simple_repeat	51797.0	NM_172597	70561.0	Mm.28129	NM_172597	ENSMUSG00000021830	Txndc16	5730420B22Rik|C77647	thioredoxin domain containing 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-35172008-4	chr7	35171909	35172109	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14376.0	NM_017394	53896.0	Mm.35567	NM_017394	ENSMUSG00000030495	Slc7a10	AL024237|Asc-1|D7Bwg0847e	solute carrier family 7 (cationic amino acid transporter, y+ system), member 10	protein-coding	4.83618954512398	5.21103774689646	3.57975962662462	5.67535194999224	4.73738907737066	5.56477578781651	4.06178550976079	5.0886437433122	-0.0638320356401934	0.886324449587792	0.998431161219273
Merged-chr17-84117003-4	chr17	84116899	84117099	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38339.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-112950544-4	chr12	112950442	112950642	+	998.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-8400.0	NM_001316724	66174.0	Mm.7070	NM_025399	ENSMUSG00000002804	Nudt14	1110030M18Rik|UGPPase	nudix (nucleoside diphosphate linked moiety X)-type motif 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-63709296-4	chr18	63709186	63709386	+	957.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001014981, intron 1 of 27)	intron (NM_001014981, intron 1 of 27)	591.0	NM_001014981	104082.0	Mm.30850	NM_001014981	ENSMUSG00000040560	Wdr7	AI462727|TRAG|mKIAA0541	WD repeat domain 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-73745090-4	chr18	73744998	73745198	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053255, intron 2 of 3)	intron (NM_053255, intron 2 of 3)	9381.0	NM_053255	114615.0	Mm.50642	NM_053255	ENSMUSG00000036941	Elac1	2610018O07Rik|8430417G19Rik	elaC ribonuclease Z 1	protein-coding	4.15081724546209	4.69642685283645	3.60367501666353	3.66287607471381	3.34060882950296	4.72687437563288	3.71847010033675	3.42724008314183	-0.245834774060644	0.63951497306553	0.982599433509505
Merged-chr13-74390442-1	chr13	74390342	74390542	+	855.0	f0_balb.idr	Intergenic	Intergenic	-13876.0	NM_001081680	238722.0	Mm.461254	NM_001081680	ENSMUSG00000069184	Zfp72	Zfp74	zinc finger protein 72	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59077345-3	chr15	59077234	59077434	+	633.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144800, intron 1 of 14)	intron (NM_144800, intron 1 of 14)	4692.0	NM_001146180	211401.0	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-13298064-4	chr9	13297948	13298148	+	994.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51092.0	NM_025534	66396.0	Mm.290620	NM_025534	ENSMUSG00000079084	Ccdc82	2310043N13Rik	coiled-coil domain containing 82	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-38082720-4	chr5	38082619	38082819	+	945.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359398, intron 1 of 9)	intron (NM_001359398, intron 1 of 9)	43489.0	NM_026959	71116.0	Mm.18959	NM_026959	ENSMUSG00000029125	Stx18	1810035L21Rik|4933425D03Rik|AU041562	syntaxin 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-36940405-4	chr16	36940319	36940519	+	984.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008225, intron 3 of 13)	intron (NM_008225, intron 3 of 13)	5436.0	NM_008225	15163.0	Mm.4091	NM_008225	ENSMUSG00000022831	Hcls1	AW213261|HS1	hematopoietic cell specific Lyn substrate 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128698858-4	chr2	128698754	128698954	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008587)	promoter-TSS (NM_008587)	-61.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-90310509-4	chr15	90310408	90310608	+	985.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A1|LTR|ERVL-MaLR	-43202.0	NR_155426	102640415.0	Mm.394352	NR_155426	ENSMUSG00000116204	Gm36480	-	predicted gene, 36480	ncRNA	3.84285116011829	2.78368857776906	3.05875711718282	2.27235122587405	3.10598862920816	4.43012595954243	2.16302811091039	3.42789627131847	0.616845427642772	0.389740337088487	0.878821374845813
Merged-chr6-48555248-4	chr6	48555149	48555349	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177736, intron 1 of 2)	RLTR42|LTR|ERVK	450.0	NM_177736	243371.0	Mm.290764	NM_177736	ENSMUSG00000073096	Lrrc61	BC027309	leucine rich repeat containing 61	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-20965484-2	chr5	20965384	20965584	+	599.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13662.0	NM_001080977	242860.0	Mm.254286	NM_001080977	ENSMUSG00000039968	Rsbn1l	8430412F05Rik|AI447441|C330002G24Rik	round spermatid basic protein 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78947851-4	chr15	78947726	78947926	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_138579, exon 1 of 24)	5' UTR (NM_138579, exon 1 of 24)	102.0	NM_001039155	110253.0	Mm.123714	NM_138579	ENSMUSG00000033088	Triobp	AI428493|EST478828|Tara|mKIAA1662	TRIO and F-actin binding protein	protein-coding	5.91079265332973	6.12455623596607	6.04081614865581	6.17692078080187	6.01492671973617	5.87427331172417	6.55339116342704	6.35787421388129	0.177046723484539	0.443526038121359	0.912075280648966
Merged-chr15-82417727-4	chr15	82417633	82417833	+	811.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10539.0	NM_010005	13101.0	Mm.174372	NM_010005	ENSMUSG00000094806	Cyp2d10	AI303445|Cyp2d|P450-2D	cytochrome P450, family 2, subfamily d, polypeptide 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-100398518-1	chr13	100398418	100398618	+	579.0	f1_balb.idr	Intergenic	MTD|LTR|ERVL-MaLR	54346.0	NM_008670	17940.0	Mm.6898	NM_008670	ENSMUSG00000021640	Naip1	AV364616|Birc1a|D13Lsd1|Naip|Naip-rs1	NLR family, apoptosis inhibitory protein 1	protein-coding	0.246741672405838	0.272779469059981	0.264341121944249	0.257770974068627	0.971671143433678	1.07553442226375	0.266209621338218	0.962069185896716	4.45081208371607	0.0221303782912628	1
Merged-chr7-122470656-3	chr7	122470520	122470720	+	763.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316672, intron 5 of 16)	MER5A1|DNA|hAT-Charlie	181495.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-120134926-4	chr2	120134811	120135011	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133838, intron 2 of 5)	intron (NM_133838, intron 2 of 5)	19664.0	NM_133838	98878.0	Mm.132226	NM_133838	ENSMUSG00000027293	Ehd4	2210022F10Rik|AI197390|AI846352|AV006278|Past2	EH-domain containing 4	protein-coding	5.30144436639101	5.27122235484855	5.48972697175985	4.87466835102415	5.21463824314559	5.3051204675543	5.38172195878582	4.89749370399438	-0.0487779331429661	0.870522922603285	0.998431161219273
Merged-chr5-139381446-3	chr5	139381347	139381547	+	906.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030258, intron 1 of 1)	intron (NM_030258, intron 1 of 1)	808.0	NM_030258	80290.0	Mm.270003	NM_030258	ENSMUSG00000044197	Gpr146	BC003323|D830046C22Rik|PGR8	G protein-coupled receptor 146	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-149793832-3	chr4	149793716	149793916	+	997.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19549.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	4.36629692542589	4.64408534262918	2.64021117521935	3.8156413703071	3.3854420155968	3.20897957615783	2.27568407145341	3.70534619125281	-1.17675223793548	0.0565825985361146	0.351331767671943
Merged-chr2-60123659-4	chr2	60123572	60123772	+	883.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001182, intron 1 of 35)	intron (NM_001001182, intron 1 of 35)	2068.0	NM_001001182	407823.0	Mm.228071	NM_001001182	ENSMUSG00000026987	Baz2b	5830435C13Rik|BC053917|D2Ertd794e	bromodomain adjacent to zinc finger domain, 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-78109107-4	chr9	78108982	78109182	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023605)	promoter-TSS (NM_023605)	-17.0	NM_001081490	71538.0	Mm.28584	NM_023605	ENSMUSG00000001366	Fbxo9	9030401P18Rik|AA986398	f-box protein 9	protein-coding	1.81731794696036	1.8517691547243	1.37295357331459	0.953186692595382	1.28223033974063	1.86688226058492	1.90686109090231	0.955718445994321	0.0476671704670938	0.969541017442487	0.998431161219273
Merged-chr11-33932075-4	chr11	33931990	33932190	+	973.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001190886, intron 1 of 7)	intron (NM_001190886, intron 1 of 7)	-30923.0	NM_031169	16533.0	Mm.6206	NM_031169	ENSMUSG00000020155	Kcnmb1	BKbeta1	potassium large conductance calcium-activated channel, subfamily M, beta member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-154790900-4	chr2	154790775	154790975	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001139511)	promoter-TSS (NM_001139511)	-235.0	NM_001139512	19383.0	Mm.221440	NM_023130	ENSMUSG00000027593	Raly	AI663842|Merc	hnRNP-associated with lethal yellow	protein-coding	6.56677896936252	5.58755551067169	6.90692924812166	6.03155346162476	6.26159480693327	5.71684528931298	6.79484136899235	6.52659047750822	0.0167863038460342	0.953419284910525	0.998431161219273
Merged-chr4-124705284-4	chr4	124705124	124705324	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010213, intron 1 of 5)	intron (NM_010213, intron 1 of 5)	4525.0	NM_010213	14201.0	Mm.331856	NM_010213	ENSMUSG00000032643	Fhl3	SLIM2	four and a half LIM domains 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-79856646-2	chr10	79856546	79856746	+	911.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077363, intron 2 of 13)	intron (NM_001077363, intron 2 of 13)	-1675.0	NR_029447	414101.0	Mm.401339	NR_029447	ENSMUSG00000091994	E130317F20Rik	-	RIKEN cDNA E130317F20 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-9002725-4	chr3	9002631	9002831	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	1473.0	NM_001357073	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44931526-2	chr7	44931426	44931626	+	671.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TTG)n|Simple_repeat|Simple_repeat	-2036.0	NM_001077264	11771.0	Mm.6877	NM_007458	ENSMUSG00000060279	Ap2a1	Adtaa	adaptor-related protein complex 2, alpha 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-4096768-4	chr11	4096660	4096860	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_144520)	TTS (NM_144520)	-1329.0	NM_026443	67900.0	Mm.41719	NM_026443	ENSMUSG00000004748	Mtfp1	1700020C11Rik|2610507A21Rik|AV005788|Mtp18	mitochondrial fission process 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19311732-2	chr7	19311632	19311832	+	718.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1687.0	NM_001347586	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30391571-1	chr2	30391471	30391671	+	583.0	f1_c57bl6.idr	promoter-TSS (NM_001290508)	promoter-TSS (NM_001290508)	-683.0	NM_020329	57170.0	Mm.285167	NM_020329	ENSMUSG00000026856	Dolpp1	0610011H20Rik|AB030189|LSFR2	dolichyl pyrophosphate phosphatase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-6087403-4	chr15	6087302	6087502	+	993.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-42698.0	NR_155429	105245876.0	Mm.128197	NR_155428		Gm41259	-	predicted gene, 41259	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-109046449-4	chr9	109046340	109046540	+	832.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357932, intron 2 of 5)	(CCTG)n|Simple_repeat|Simple_repeat	-4656.0	NM_001357935	66940.0	Mm.196533	NM_025858	ENSMUSG00000025647	Shisa5	2310008D10Rik|6430628I05Rik|Scotin|mShisa5	shisa family member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-78527515-4	chr9	78527401	78527601	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45777.0	NM_010106	13627.0	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-45285286-2	chr9	45285186	45285386	+	679.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	-16137.0	NM_001324486	16154.0	Mm.379327	NM_008348	ENSMUSG00000032089	Il10ra	AW553859|CDw210|CDw210a|IL-10R1|IL-10RA|Il10r|mIL-10R	interleukin 10 receptor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-74402551-3	chr18	74402450	74402650	+	958.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR30|LTR|ERV1	-40069.0	NM_201600	17919.0	Mm.260098	NM_008661	ENSMUSG00000025885	Myo5b	AI661750|mKIAA1119	myosin VB	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-99999659-4	chr12	99999544	99999744	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164426, intron 2 of 2)	ORR1C1|LTR|ERVL-MaLR	35145.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-77825485-3	chr9	77825382	77825582	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	70947.0	NM_010295	14629.0	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	3.17114867789447	4.01391253013313	3.99181205573707	2.98544148265554	3.19767999933972	2.49510466725297	2.8657854396962	2.64112448394309	-1.28025958091522	0.0403331855647939	0.286454751621782
Merged-chr9-35268494-3	chr9	35268393	35268593	+	949.194458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175411)	promoter-TSS (NM_175411)	612.0	NM_028040	71989.0	Mm.273515	NM_028040	ENSMUSG00000032044	Rpusd4	2410001E19Rik	RNA pseudouridylate synthase domain containing 4	protein-coding	0.3970244774098	0.430031984731214	1.38735596116533	0.411077748262082	0.575842436575501	0.432406527053811	1.3096283106445	1.04092569694447	0.615558705310163	0.728512935196167	0.998431161219273
Merged-chr7-18922906-1	chr7	18922806	18923006	+	547.0	f1_c57bl6.idr	Intergenic	Intergenic	-2982.0	NM_001029877	384569.0	Mm.262724	NM_001029877	ENSMUSG00000030411	Nova2	Gm1424	neuro-oncological ventral antigen 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-142507489-2	chr6	142507389	142507589	+	546.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008492, intron 1 of 7)	intron (NM_008492, intron 1 of 7)	468.0	NM_008492	16832.0	Mm.9745	NM_008492	ENSMUSG00000030246	Ldhb	AI790582|H-Ldh|LDH-B|LDH-H|Ldh-2|Ldh2	lactate dehydrogenase B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96241623-2	chr3	96241523	96241723	+	600.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1249.0	NM_178212	319192.0	Mm.5220	NM_178212	ENSMUSG00000063954	Hist2h2aa2	H2a-614|H2a-615	histone cluster 2, H2aa2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-144561755-4	chr3	144561665	144561865	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355234, intron 1 of 6)	MTE2b|LTR|ERVL-MaLR	8451.0	NM_011828	23908.0	Mm.12863	NM_011828	ENSMUSG00000040151	Hs2st1	2OST|AW214369|Hs2st|mKIAA0448	heparan sulfate 2-O-sulfotransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78257392-4	chr15	78257299	78257499	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008677, intron 7 of 9)	RSINE1|SINE|B4	12588.0	NM_008677	17972.0	Mm.2068	NM_008677	ENSMUSG00000071715	Ncf4	AI451400|p40phox	neutrophil cytosolic factor 4	protein-coding	4.41150020572124	3.76732499509288	4.61851502288186	5.29689590191921	3.95109774670817	4.06512734312658	4.60439687080342	5.13246012294713	-0.142461340344295	0.751644730525973	0.998431161219273
Merged-chr9-118486515-3	chr9	118486421	118486621	+	873.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010136)	TTS (NM_010136)	8332.0	NM_010136	13813.0	Mm.200692	NM_010136	ENSMUSG00000032446	Eomes	C77258|TBR-2|Tbr2	eomesodermin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-96197533-3	chr15	96197430	96197630	+	635.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040423, intron 1 of 5)	intron (NR_040423, intron 1 of 5)	444.0	NR_040423	70040.0	Mm.437832	NR_040423		2610037D02Rik	AU024679	RIKEN cDNA 2610037D02 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-120098057-4	chr7	120097903	120098103	+	712.766663	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4423.0	NM_145586	233806.0	Mm.257952	NM_145586	ENSMUSG00000030917	Tmem159	8430420C20Rik	transmembrane protein 159	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-71344091-4	chr2	71344004	71344204	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172436, intron 2 of 17)	intron (NM_172436, intron 2 of 17)	23450.0	NM_172436	78830.0	Mm.30928	NM_172436	ENSMUSG00000027010	Slc25a12	2610002D09Rik|AI839531|B230107K20Rik|BB129864	solute carrier family 25 (mitochondrial carrier, Aralar), member 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-69942993-2	chr16	69942893	69943093	+	622.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3_Mus|LINE|L1	-79249.0	NM_173069	224318.0	Mm.212743	NM_173069	ENSMUSG00000063163	Speer2	SPEER-2	spermatogenesis associated glutamate (E)-rich protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95672663-4	chr3	95672561	95672761	+	940.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13940.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	1.8053960649528	0.755850883373737	0.740832520149411	1.10720852103864	1.05640807692712	0.759190411500084	1.85505915344529	1.38976975936815	0.488437538216174	0.736572133368119	0.998431161219273
Merged-chr19-43513101-3	chr19	43513016	43513216	+	768.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010324, intron 2 of 8)	B1_Mus1|SINE|Alu	11489.0	NM_010324	14718.0	Mm.19039	NM_010324	ENSMUSG00000025190	Got1	AI789014|Got-1|cAspAT|cCAT	glutamic-oxaloacetic transaminase 1, soluble	protein-coding	1.24857412442488	1.07573193528509	1.48204715926396	1.43637279914444	1.64139891966084	0.861089085066978	1.60747409613871	0.836300950769824	-0.0421670308912022	0.974952822769283	0.998431161219273
Merged-chr12-5213885-4	chr12	5213795	5213995	+	896.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164493, intron 2 of 13)	intron (NM_001164493, intron 2 of 13)	161787.0	NM_001164493	208439.0	Mm.388281	NM_001164493	ENSMUSG00000020627	Klhl29	A230106N14Rik|Gm68|Kbtbd9|mKIAA1921	kelch-like 29	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-34254254-2	chr13	34254154	34254354	+	740.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033167, intron 3 of 10)	intron (NM_001033167, intron 3 of 10)	90928.0	NM_001033167	73102.0	Mm.23932	NM_001033167	ENSMUSG00000038267	Slc22a23	3110004L20Rik	solute carrier family 22, member 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-51262643-1	chr14	51262543	51262743	+	592.0	f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-6531.0	NM_053113	93726.0	Mm.153688	NM_053113	ENSMUSG00000047222	Rnase2a	Ear11	ribonuclease, RNase A family, 2A (liver, eosinophil-derived neurotoxin)	protein-coding	1.09467594063977	0.480030430729611	1.58482667203831	0.952199620118679	0.89567747607816	0.482398318385756	0.471784338810668	0.462605299069127	-2.61795440306053	0.134044609562868	0.571666672850202
Merged-chr18-53899355-4	chr18	53899249	53899449	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152809, intron 2 of 12)	intron (NM_152809, intron 2 of 12)	37236.0	NM_152809	70425.0	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	3.47024805527682	2.84224780797222	3.30297231608518	2.51266466480109	3.94317355139762	2.70805718092212	3.32878302351874	3.94107390645373	0.780901286033123	0.207356017307027	0.695450287639686
Merged-chr14-17813831-2	chr14	17813731	17813931	+	983.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113417, intron 1 of 9)	intron (NM_001113417, intron 1 of 9)	152871.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-69885962-1	chr8	69885862	69886062	+	594.0	f1_c57bl6.idr	intron (NM_026818, intron 3 of 7)	intron (NM_026818, intron 3 of 7)	1430.0	NM_026818	68709.0	Mm.334584	NM_026818	ENSMUSG00000044006	Cilp2	1110031K21Rik|AA407300|CLIP-2	cartilage intermediate layer protein 2	protein-coding	2.46045529121134	2.76190000392813	1.80508604823168	2.19557662749313	2.3978953817958	2.58909873240754	1.35922715278448	2.07881439240906	-0.377977452318473	0.681492054279407	0.995882295196263
Merged-chr17-81706777-4	chr17	81706677	81706877	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 1 of 8)	intron (NR_104580, intron 1 of 8)	31610.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96263302-4	chr3	96263148	96263348	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033596)	promoter-TSS (NM_033596)	69.0	NM_033596	97122.0	Mm.227295	NM_033596	ENSMUSG00000091405	Hist2h4	H4|X04652	histone cluster 2, H4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88467285-4	chr3	88467167	88467367	+	813.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15-int|LTR|ERVL	-6085.0	NM_001163489	20351.0	Mm.439752	NM_013658	ENSMUSG00000028064	Sema4a	AI132332|SemB|Semab	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-53525128-2	chr11	53525028	53525228	+	892.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361969, intron 1 of 9)	intron (NM_001361969, intron 1 of 9)	4940.0	NM_001361969	20362.0	Mm.274399	NM_033144	ENSMUSG00000018398	Sept8	AW046166|Sepl	septin 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-160211305-2	chr2	160211205	160211405	+	604.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	116189.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122112424-3	chr8	122112328	122112528	+	867.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	134404.0	NR_106096	102466915.0		NR_106096	ENSMUSG00000099140	Mir7237	Gm27482|mmu-mir-7237	microRNA 7237	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-22855258-3	chr5	22855138	22855338	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359998, intron 1 of 3)	intron (NM_001359998, intron 1 of 3)	-108354.0	NR_027362	330052.0	Mm.459265	NR_027362	ENSMUSG00000105076	A930003O13Rik	-	RIKEN cDNA A930003O13 gene	ncRNA	4.06746254380276	4.02636060731902	4.11262178090418	4.09817760561649	1.4474250583434	1.68676552985772	3.22614757951861	3.21741007346198	-2.21020787511593	0.00108404172533041	0.0206931236989316
Merged-chr5-130172941-2	chr5	130172841	130173041	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359233, intron 1 of 7)	B1_Mur4|SINE|Alu	1122.0	NM_001359233	56715.0	Mm.288639	NM_019983	ENSMUSG00000025340	Rabgef1	Rab5ef|Rabex5|Rin2	RAB guanine nucleotide exchange factor (GEF) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-54207249-4	chr13	54207140	54207340	+	960.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153432, intron 1 of 3)	intron (NR_153432, intron 1 of 3)	15107.0	NR_153432	15466.0	Mm.57243	NM_008286	ENSMUSG00000034987	Hrh2	H2R|HH2R	histamine receptor H2	protein-coding	3.80596567237102	3.73884226470012	3.69719410492506	3.59304722155995	4.48844779900851	4.27364630815889	3.7259768890751	4.1330035766477	0.666540030959165	0.141153291424769	0.586141159615038
Merged-chr15-78608990-4	chr15	78608885	78609085	+	954.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028195, intron 6 of 12)	MIRb|SINE|MIR	11938.0	NM_028195	72318.0	Mm.32911	NM_028195	ENSMUSG00000018008	Cyth4	2510004M07Rik|5830469K17Rik|AI467541|Pscd4|mFLJ00017	cytohesin 4	protein-coding	4.1728923872544	3.58969628465806	3.37287988240126	3.82193015604696	3.5320411547473	4.26507418870858	3.66889862116502	3.47545091387358	-0.0218654119107108	0.965355270519361	0.998431161219273
Merged-chr10-127341991-2	chr10	127341891	127342091	+	625.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010296)	promoter-TSS (NM_010296)	-412.0	NM_010296	14632.0	Mm.391450	NM_010296	ENSMUSG00000025407	Gli1	AV235269|Zfp-5|Zfp5	GLI-Kruppel family member GLI1	protein-coding	-0.0980155869687769	-0.220151832815803	-0.224262647514466	0.27806958698958	-0.094170766823903	-0.219222860961358	-0.223357429235034	0.284686267235527	0.0311183153145615	0.989119696665418	1
Merged-chr1-87623021-3	chr1	87622910	87623110	+	919.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110192, intron 1 of 26)	intron (NM_001110192, intron 1 of 26)	2698.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-51334077-3	chr1	51333965	51334165	+	900.638855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045151)	promoter-TSS (NR_045151)	-286.0	NR_045151	442821.0	Mm.118030	NR_045151	ENSMUSG00000101799	9330175M20Rik	-	RIKEN cDNA 9330175M20 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44723153-4	chr9	44723080	44723280	+	948.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153537, intron 4 of 21)	intron (NM_153537, intron 4 of 21)	12018.0	NM_153537	102693.0	Mm.28639	NM_153537	ENSMUSG00000048537	Phldb1	AU041016|D330037A14Rik|Ll5a	pleckstrin homology like domain, family B, member 1	protein-coding	0.119970127580673	-0.00983102284587536	-0.0155077111773707	0.148843974043535	0.253094146794006	-0.00855297345211659	0.859518848939026	0.151857458853845	2.40888939360513	0.23436359229343	1
Merged-chr10-33951296-4	chr10	33951248	33951448	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_153113)	promoter-TSS (NR_153113)	-89.0	NR_153113	72580.0	Mm.248081	NM_028287	ENSMUSG00000039531	Zufsp	2700019D07Rik	zinc finger with UFM1-specific peptidase domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-38339007-4	chr18	38338940	38339140	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011937)	promoter-TSS (NM_011937)	-47.0	NM_011937	26384.0	Mm.22374	NM_011937	ENSMUSG00000052102	Gnpda1	GNPDA|Gnp1|Gnpi|oscillin	glucosamine-6-phosphate deaminase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25109538-4	chr7	25109444	25109644	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163556, intron 5 of 13)	intron (NM_001163556, intron 5 of 13)	-12369.0	NR_105855	102465968.0		NR_105855	ENSMUSG00000098441	Mir6537	Gm27808|mmu-mir-6537	microRNA 6537	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-98972555-4	chr10	98972457	98972657	+	927.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359507, intron 2 of 21)	intron (NM_001359507, intron 2 of 21)	57405.0	NM_026482	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-65658978-4	chr3	65658892	65659092	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_106200)	promoter-TSS (NR_106200)	-296.0	NR_106200	102465905.0		NR_106200	ENSMUSG00000098944	Mir8120	Gm27637|mmu-mir-8120	microRNA 8120	ncRNA	4.01927146380366	4.13791188846853	3.8046331466244	2.64508927488316	4.51158644454636	4.0340091491066	3.97183642550889	3.0766208437868	0.327308623691177	0.551262133689097	0.959195395405638
Merged-chr11-97051341-2	chr11	97051241	97051441	+	971.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310509, intron 1 of 22)	intron (NM_001310509, intron 1 of 22)	521.0	NM_001081434	71240.0	Mm.190450	NM_001081434	ENSMUSG00000038534	Osbpl7	4933437E18Rik	oxysterol binding protein-like 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-74288983-2	chr1	74288883	74289083	+	643.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_027154, exon 12 of 12)	3' UTR (NM_027154, exon 12 of 12)	3949.0	NM_001039509	56695.0	Mm.384726	NM_019999	ENSMUSG00000026179	Pnkd	2210013N15Rik|2810403H05Rik|AI854243|Brp17|MNCb-5687|MR-1|Tahccp2	paroxysmal nonkinesiogenic dyskinesia	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-21996906-5	chr10	21996872	21997072	+	959.349976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011361, intron 7 of 11)	intron (NM_011361, intron 7 of 11)	2306.0	NM_011361	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-66369174-2	chr5	66369074	66369274	+	861.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310626, intron 8 of 15)	intron (NM_001310626, intron 8 of 15)	-31509.0	NM_001201416	11787.0	Mm.5159	NM_009686	ENSMUSG00000029207	Apbb2	2310007D03Rik|FE65L1|Rirl1|TR2L|Zfra	amyloid beta (A4) precursor protein-binding, family B, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-148820604-2	chr5	148820504	148820704	+	953.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER5B|DNA|hAT-Charlie	42641.0	NR_131106	78015.0	Mm.243839	NR_131106	ENSMUSG00000085740	4930505K14Rik	-	RIKEN cDNA 4930505K14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-101871368-4	chr2	101871245	101871445	+	882.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355625, intron 1 of 8)	intron (NM_001355625, intron 1 of 8)	11682.0	NM_001355625	72446.0	Mm.24138	NM_175181	ENSMUSG00000032841	Prr5l	2600010E01Rik|4833411O04Rik|Protor-2|Protor2	proline rich 5 like	protein-coding	2.8381685797868	2.66446775567672	4.01020977625702	3.56925694476219	3.1334855187975	2.29953802731816	3.21566209612305	3.92488260071056	-0.17912072190602	0.787237319850533	0.998431161219273
Merged-chr4-16198927-4	chr4	16198823	16199023	+	912.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045765, intron 2 of 6)	intron (NR_045765, intron 2 of 6)	34813.0	NR_045765	100415915.0	Mm.387180	NR_045765	ENSMUSG00000085112	A530072M11Rik	-	RIKEN cDNA gene A530072M11	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52823964-4	chr13	52823864	52824064	+	976.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4b|LINE|L1	-66759.0	NR_027893	105404.0	Mm.184173	NR_027893		BB123696	-	expressed sequence BB123696	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33514060-2	chr16	33513960	33514160	+	882.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4269.0	NM_134251	171286.0	Mm.35253	NM_134251	ENSMUSG00000035506	Slc12a8	CCC9|E330020C02Rik	solute carrier family 12 (potassium/chloride transporters), member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-108606400-2	chr6	108606300	108606500	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_104577, intron 3 of 6)	MIR|SINE|MIR	16767.0	NR_040757	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-69044966-5	chr3	69044914	69045114	+	934.8800050000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025863)	promoter-TSS (NM_025863)	-272.0	NM_025863	66949.0	Mm.176695	NM_025863	ENSMUSG00000034317	Trim59	2310035M22Rik|2700022F13Rik|Mrf1|TSBF1	tripartite motif-containing 59	protein-coding	4.03412882347964	3.04294198661864	4.40639304033347	2.49598392600417	4.65484282004968	4.10252256469891	4.92369253223493	4.311539428074	1.10227138129384	0.0346920363554348	0.263401654824763
Merged-chr11-94129866-4	chr11	94129755	94129955	+	854.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-81599.0	NM_009427	22057.0	Mm.259673	NM_009427	ENSMUSG00000037573	Tob1	Tob|Trob	transducer of ErbB-2.1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-59741800-2	chr13	59741718	59741918	+	711.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8168.0	NR_045977	75223.0	Mm.444771	NR_045977	ENSMUSG00000097502	4930528D03Rik	-	RIKEN cDNA 4930528D03 gene	ncRNA	0.716999141830745	-0.094333038166238	-0.117134524143262	-0.317979787076291	-0.324006126220341	-0.307057822898852	-0.312535463788116	-0.317237959811247	-3.88933864716152	0.0954987085111819	1
Merged-chr6-123263382-4	chr6	123263279	123263479	+	748.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163161, intron 1 of 5)	intron (NM_001163161, intron 1 of 5)	1272.0	NM_010819	17474.0	Mm.441101	NM_010819	ENSMUSG00000030144	Clec4d	Clecsf8|Mpcl|mcl	C-type lectin domain family 4, member d	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-8502616-4	chr12	8502501	8502701	+	924.712524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2592.0	NM_007483	11852.0	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-44409669-2	chr19	44409569	44409769	+	571.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1960.0	NM_009127	20249.0	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98790535-2	chr11	98790435	98790635	+	732.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4981.0	NM_001361931	74026.0	Mm.258352	NM_028722	ENSMUSG00000052915	Msl1	2810017F12Rik|4121402D02Rik|4930463F05Rik|AA682082|Msl-1	male specific lethal 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-3590514-3	chr6	3590415	3590615	+	864.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167751, intron 22 of 26)	intron (NM_001167751, intron 22 of 26)	92122.0	NM_001167750	73288.0	Mm.45539	NM_024260	ENSMUSG00000001376	Vps50	1700034M03Rik|8430415E05Rik|BLM|C87205|Ccdc132|mKIAA1861	VPS50 EARP/GARPII complex subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-25053885-2	chr2	25053785	25053985	+	585.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020276)	promoter-TSS (NM_020276)	-494.0	NM_001177654	56876.0	Mm.42956	NM_020276	ENSMUSG00000006476	Nsmf	Jacob|Nelf	NMDA receptor synaptonuclear signaling and neuronal migration factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135976056-2	chr5	135975963	135976163	+	724.5	f0_c57.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-1587.0	NM_001160366	109267.0	Mm.332750	NM_001160366	ENSMUSG00000029699	Ssc4d	C330016E03Rik|S4D-SRCRB|SRCRB-S4D|Srcrb4d	scavenger receptor cysteine rich family, 4 domains	protein-coding	3.49745922402504	3.7045263783092	1.97406589337989	3.61662965991288	3.04297712352869	3.31547671472054	3.29872568854885	3.00795613697588	-0.305476365652974	0.636271395612498	0.982417279970648
Merged-chr3-108797968-4	chr3	108797854	108798054	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011504, intron 16 of 18)	intron (NM_011504, intron 16 of 18)	42548.0	NM_011504	20912.0	Mm.316894	NM_011504	ENSMUSG00000027882	Stxbp3	Munc-18c|Stxbp3a|Sxtbp3|Unc18-3	syntaxin binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-90120003-2	chr16	90119903	90120103	+	922.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22234.0	NR_033476	100038709.0	Mm.484070	NR_033476		Gm10789	-	predicted gene 10789	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-48307224-2	chr17	48307124	48307324	+	577.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360121, intron 2 of 4)	intron (NM_001360121, intron 2 of 4)	7186.0	NM_001360121	328833.0	Mm.329104	NM_001033405	ENSMUSG00000071068	Treml2	AW049306|Gm750|Tlt2	triggering receptor expressed on myeloid cells-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3981604-4	chr4	3981510	3981710	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38053.0	NM_181989	242285.0	Mm.98096	NM_181989	ENSMUSG00000028236	Sdr16c5	Rdhe2|Scdr9	short chain dehydrogenase/reductase family 16C, member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-61966273-1	chr9	61966173	61966373	+	542.0	f1_balb.idr	intron (NM_028748, intron 5 of 7)	intron (NM_028748, intron 5 of 7)	-19474.0	NM_024245	71819.0	Mm.259374	NM_024245	ENSMUSG00000032254	Kif23	3110001D19Rik|C87313|CHO1|Knsl5|MKLP-1|MKLP1	kinesin family member 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-103760936-4	chr5	103760845	103761045	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080798, intron 1 of 19)	intron (NM_001080798, intron 1 of 19)	6372.0	NM_001080798	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99558678-1	chr7	99558578	99558778	+	569.0	f1_balb.idr	intron (NM_178220, intron 1 of 14)	B1_Mur4|SINE|Alu	6409.0	NR_029760	723840.0		NR_029760	ENSMUSG00000065571	Mir326	Mirn326|mir-326|mmu-mir-326	microRNA 326	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-53413631-2	chr15	53413531	53413731	+	952.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3_Mus|LINE|L1	-67448.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-29521417-2	chr6	29521317	29521517	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5208.0	NM_001311083	27056.0	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-72489548-1	chr8	72489448	72489648	+	610.0	f1_c57bl6.idr	exon (NM_177766, exon 3 of 6)	exon (NM_177766, exon 3 of 6)	3066.0	NM_177766	270066.0	Mm.291461	NM_177766	ENSMUSG00000019731	Slc35e1	6030458H05|AA408278	solute carrier family 35, member E1	protein-coding	0.256410994090233	-0.21296184983437	-0.217924365938328	-0.221758428483363	-0.0762924406709852	-0.211844262620941	0.574497843037813	-0.221088279876366	1.14965706763763	0.62944271742368	1
Merged-chr18-36803058-4	chr18	36803025	36803225	+	888.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	1362.0	NR_027885	378472.0	Mm.482379	NR_027885		Vaultrc5	Gm22653|Mvg1	vault RNA component 5	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126199866-4	chr7	126199781	126199981	+	938.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028816, intron 1 of 23)	intron (NM_028816, intron 1 of 23)	620.0	NM_001311143	74204.0	Mm.235663	NM_028816	ENSMUSG00000000131	Xpo6	2610005L19Rik|AL022631|C230091E20Rik|R75304|Ranbp20|exp6|mKIAA0370	exportin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-131371165-4	chr7	131371073	131371273	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039534)	promoter-TSS (NM_001039534)	27.0	NM_001039534	214580.0	Mm.272948	NM_177609	ENSMUSG00000063179	Pstk	5430423O14Rik|5730458D16Rik|Gm1099|R75284	phosphoseryl-tRNA kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-93808093-2	chr16	93807993	93808193	+	970.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357118, intron 34 of 35)	intron (NM_001357118, intron 34 of 35)	-13192.0	NR_151466	102633000.0	Mm.443436	NR_151466		2310043M15Rik	-	RIKEN cDNA 2310043M15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-33540221-3	chr6	33540140	33540340	+	882.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009148, intron 9 of 17)	intron (NM_009148, intron 9 of 17)	291112.0	NM_001347089	20336.0	Mm.265512	NM_009148	ENSMUSG00000029763	Exoc4	C78892|Sec8|Sec8l1	exocyst complex component 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118244747-2	chr11	118244647	118244847	+	645.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	B3|SINE|B2	3845.0	NM_001112699	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-136831880-4	chr6	136831780	136831980	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001039558, exon 2 of 2)	5' UTR (NM_001039558, exon 2 of 2)	3037.0	NM_178776	320135.0	Mm.386899	NM_178776	ENSMUSG00000047515	BC049715	-	cDNA sequence BC049715	protein-coding	4.81245250138912	6.00393036870675	5.40793348637658	6.26907109686544	5.24278137489165	5.30000239322329	5.35092757028888	5.2067816314279	-0.514099518230189	0.116461186089128	0.534780130868259
Merged-chr5-142724250-2	chr5	142724150	142724350	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001122730)	TTS (NM_001122730)	22149.0	NM_146257	243328.0	Mm.125942	NM_146257	ENSMUSG00000050822	Slc29a4	ENT4|mPMAT	solute carrier family 29 (nucleoside transporters), member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-14459994-2	chr10	14459893	14460093	+	837.25	f0_balb.idr|f0_c57.idr	intron (NM_001002268, intron 4 of 24)	intron (NM_001002268, intron 4 of 24)	85043.0	NM_001002268	215798.0	Mm.440142	NM_001002268	ENSMUSG00000039116	Adgrg6	1190004A11Rik|AI449247|AW045736|DREG|Gm222|Gpr126	adhesion G protein-coupled receptor G6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-97123561-4	chr7	97123468	97123668	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162477, intron 1 of 9)	intron (NM_001162477, intron 1 of 9)	41817.0	NM_010248	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-31112228-3	chr7	31112141	31112341	+	923.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110252, intron 2 of 13)	intron (NM_001110252, intron 2 of 13)	-1244.0	NM_001276269	15451.0	Mm.19182	NM_008281	ENSMUSG00000001249	Hpn	Hlb320	hepsin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-112962479-2	chr12	112962379	112962579	+	565.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_028193, exon 15 of 18)	exon (NM_028193, exon 15 of 18)	-14003.0	NM_001145900	399566.0	Mm.440140	NM_201646	ENSMUSG00000002803	Btbd6	-	BTB (POZ) domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-115815660-4	chr3	115815573	115815773	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	72386.0	NR_027894	68161.0	Mm.392043	NR_015487	ENSMUSG00000054426	A930005H10Rik	-	RIKEN cDNA A930005H10 gene	ncRNA	0.810484769038163	0.164518753717003	0.15782024806718	0.152632611988395	0.299071669227248	0.922803433987984	0.159300055208821	0.475012118069974	0.833051394907068	0.675215542709253	1
Merged-chr17-62574742-4	chr17	62574619	62574819	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	306598.0	NM_207654	13640.0	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-23057041-4	chr19	23056938	23057138	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-84188.0	NM_010638	16601.0	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|Gm9971	Kruppel-like factor 9	protein-coding	3.78715790414498	2.98839280478236	4.40124268896282	2.37342256416117	3.62759139786395	1.59851224493355	2.77637009605895	2.21103671357526	-1.29695225006056	0.0965765175123714	0.482668032677075
Merged-chr2-71044308-3	chr2	71044212	71044412	+	680.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145524, intron 1 of 9)	intron (NM_145524, intron 1 of 9)	11294.0	NM_145524	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-55505989-3	chr16	55505919	55506119	+	777.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11288.0	NR_039578	100628589.0		NR_039578	ENSMUSG00000093292	Mir5118	mmu-mir-5118|mu-mir-5118	microRNA 5118	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-119824252-4	chr8	119824154	119824354	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028071, intron 2 of 3)	intron (NM_028071, intron 2 of 3)	16325.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-180566672-2	chr2	180566572	180566772	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14550.0	NM_028479	73247.0	Mm.426558	NM_028479	ENSMUSG00000027569	Mrgbp	1600027N09Rik|AW060503|C80444	MRG/MORF4L binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-18718530-1	chr13	18718430	18718630	+	766.0	f1_balb.idr	intron (NM_172120, intron 1 of 28)	intron (NM_172120, intron 1 of 28)	1238.0	NM_172120	218035.0	Mm.27389	NM_172120	ENSMUSG00000041236	Vps41	AI317346|Vam2|mVam2	VPS41 HOPS complex subunit	protein-coding	1.09128239150234	1.89860320892909	2.12069782821063	0.694595656187799	0.66528293138817	2.47921138323004	0.719894599364857	0.698105539193549	-0.313828011786319	0.899714047930751	0.998431161219273
Merged-chr11-52232799-2	chr11	52232699	52232899	+	612.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011543, intron 1 of 5)	intron (NM_011543, intron 1 of 5)	804.0	NM_011543	21402.0	Mm.42944	NM_011543	ENSMUSG00000036309	Skp1a	15kDa|2610043E24Rik|2610206H23Rik|EMC19|OCP-II|OCP2|SKP1|Tceb1l|p19A|p19Skp1	S-phase kinase-associated protein 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-90220374-3	chr3	90220250	90220450	+	681.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026677)	promoter-TSS (NM_026677)	-434.0	NM_026677	68328.0	Mm.29355	NM_026677	ENSMUSG00000027935	Rab13	0610007N03Rik|B230212B15Rik	RAB13, member RAS oncogene family	protein-coding	2.33063664135599	2.13830828050641	1.80116086729072	1.75306719963643	1.53798520050113	1.24659219853744	2.29525754447726	2.12540326388483	-0.406232708682045	0.689985814930101	0.996533206832645
Merged-chr9-114729422-2	chr9	114729322	114729522	+	646.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1781.0	NM_026036	67213.0	Mm.28858	NM_026036	ENSMUSG00000032434	Cmtm6	2810051A14Rik|AA536733|Cklfsf6	CKLF-like MARVEL transmembrane domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98863579-4	chr11	98863489	98863689	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_197940)	promoter-TSS (NM_197940)	-9.0	NM_197940	68524.0	Mm.28661	NM_197940	ENSMUSG00000038013	Wipf2	1110014J05Rik|5730509C05Rik|AA407487|Gm1176|Wich|Wire	WAS/WASL interacting protein family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-60005412-2	chr10	60005312	60005512	+	618.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_026937, intron 2 of 10)	B3A|SINE|B2	2085.0	NM_001199187	69090.0	Mm.155839	NM_026937	ENSMUSG00000044475	Ascc1	1810015P09Rik|AI550520|ASC1p50|CGI-18	activating signal cointegrator 1 complex subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-73329159-2	chr12	73329059	73329259	+	584.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037717, intron 5 of 15)	intron (NM_001037717, intron 5 of 15)	42311.0	NM_001037717	625098.0	Mm.32075	NM_001037717	ENSMUSG00000044712	Slc38a6	AW322671|EG625098	solute carrier family 38, member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-50294332-4	chr6	50294218	50294418	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001347213, exon 24 of 24)	3' UTR (NM_001347213, exon 24 of 24)	-32549.0	NM_018769	54722.0	Mm.248361	NM_018769	ENSMUSG00000029821	Gsdme	2310037D07Rik|4932441K13Rik|Dfna5|Dfna5h|EG14210|Fin15	gasdermin E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133687203-2	chr4	133687103	133687303	+	792.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080819, intron 14 of 19)	intron (NM_001080819, intron 14 of 19)	-14037.0	NM_001356466	230801.0	Mm.217004	NM_178698	ENSMUSG00000043257	Pigv	B330013B03|D430024F16Rik	phosphatidylinositol glycan anchor biosynthesis, class V	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101086075-2	chr11	101085975	101086175	+	693.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001305982, exon 9 of 10)	exon (NM_001305982, exon 9 of 10)	-1215.0	NM_011550	21428.0	Mm.628	NM_011550	ENSMUSG00000017801	Mlx	Tcfl4|Tf4|bHLHd13	MAX-like protein X	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-35563707-3	chr5	35563633	35563833	+	792.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030208, intron 9 of 10)	intron (NM_030208, intron 9 of 10)	11337.0	NM_030208	78890.0	Mm.98522	NM_030208	ENSMUSG00000029097	Trmt44	2310079F23Rik|Mettl19	tRNA methyltransferase 44	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-4087720-4	chr7	4087623	4087823	+	926.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033568, intron 6 of 8)	intron (NR_033568, intron 6 of 8)	-24519.0	NM_001302676	52855.0	Mm.290880	NM_178611	ENSMUSG00000055541	Lair1	5133400O11Rik|BB115266|D7Bwg0421e|Lair-1	leukocyte-associated Ig-like receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-86631317-4	chr9	86631208	86631408	+	935.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008615, intron 6 of 13)	intron (NM_008615, intron 6 of 13)	55969.0	NM_001198933	17436.0	Mm.148155	NM_008615	ENSMUSG00000032418	Me1	D9Ertd267e|Mdh-1|Mod-1|Mod1	malic enzyme 1, NADP(+)-dependent, cytosolic	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-29373786-2	chr19	29373686	29373886	+	572.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_021893, exon 3 of 7)	exon (NM_021893, exon 3 of 7)	6348.0	NM_021893	60533.0	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-79172686-4	chr12	79172594	79172794	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016800)	promoter-TSS (NM_016800)	-236.0	NM_016800	53612.0	Mm.265929	NM_016800	ENSMUSG00000021124	Vti1b	AU015348|GES30|MVti1b|SNARE|Vti1-rp1	vesicle transport through interaction with t-SNAREs 1B	protein-coding	5.41645523422283	4.87925891071776	5.09607984485478	5.13629696678656	5.47422036418018	4.81347842939395	4.71320337451953	5.19034145408548	-0.0697131888268208	0.828429215652882	0.998431161219273
Merged-chr6-90737608-4	chr6	90737508	90737708	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356440, intron 1 of 13)	intron (NM_001356440, intron 1 of 13)	-21079.0	NM_001134383	232227.0	Mm.196943	NM_182784	ENSMUSG00000034312	Iqsec1	AW561907|BC026481|BRAG2|D6Ertd349e|cI-43	IQ motif and Sec7 domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-95021506-2	chr13	95021406	95021606	+	656.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172590, intron 12 of 12)	intron (NM_172590, intron 12 of 12)	45162.0	NM_172590	218460.0	Mm.33856	NM_172590	ENSMUSG00000042015	Wdr41	B830029I03Rik|MSTP048	WD repeat domain 41	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-116128574-2	chr3	116128474	116128674	+	770.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_011693, exon 2 of 9)	exon (NM_011693, exon 2 of 9)	1114.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-34644154-3	chr14	34644088	34644288	+	821.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_029647)	TTS (NR_029647)	9386.0	NR_029647	723831.0		NR_029647	ENSMUSG00000094316	Mir297-1	Mir297a-1|Mirn297-1	microRNA 297-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70222617-2	chr11	70222517	70222717	+	694.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-1623.0	NM_172371	69309.0	Mm.93266	NM_172371	ENSMUSG00000044367	Slc16a13	1700007D07Rik	solute carrier family 16 (monocarboxylic acid transporters), member 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-120840145-3	chr10	120840041	120840241	+	892.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177092, intron 4 of 6)	L1_Rod|LINE|L1	-17488.0	NR_038023	100504616.0	Mm.451174	NR_038023	ENSMUSG00000087480	Gm15910	-	predicted gene 15910	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-122047396-2	chr14	122047296	122047496	+	555.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12722.0	NM_001037744	223262.0	Mm.297637	NM_001037744	ENSMUSG00000071229	Timm8a2	-	translocase of inner mitochondrial membrane 8A2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129129707-4	chr2	129129635	129129835	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025395)	promoter-TSS (NM_025395)	35.0	NM_025395	66170.0	Mm.40621	NM_025395	ENSMUSG00000037938	Chchd5	1110027L01Rik|AW045710	coiled-coil-helix-coiled-coil-helix domain containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-84190307-3	chr12	84190230	84190430	+	895.1333619999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163501, intron 1 of 12)	intron (NM_001163501, intron 1 of 12)	3685.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91984738-4	chr2	91984682	91984882	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011957, intron 10 of 11)	C-rich|Low_complexity|Low_complexity	-21219.0	NM_138306	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-75557783-1	chr9	75557683	75557883	+	583.0	f1_c57bl6.idr	intron (NM_001357828, intron 1 of 10)	intron (NM_001357828, intron 1 of 10)	1874.0	NM_016963	50875.0	Mm.38445	NM_016963	ENSMUSG00000058587	Tmod3	U-Tmod|UTMOD	tropomodulin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-123005879-2	chr6	123005779	123005979	+	777.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001005860, intron 3 of 5)	Lx5c|LINE|L1	15512.0	NM_001005860	474145.0	Mm.263483	NM_001005860	ENSMUSG00000059639	Clec4a4	Dcir2	C-type lectin domain family 4, member a4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-5966185-3	chr2	5966079	5966279	+	946.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081132, intron 3 of 21)	intron (NM_001081132, intron 3 of 21)	14710.0	NM_001081132	326622.0	Mm.31102	NM_001081132	ENSMUSG00000043241	Upf2	-	UPF2 regulator of nonsense transcripts homolog (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128526744-4	chr10	128526630	128526830	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011843)	promoter-TSS (NM_011843)	-871.0	NM_011843	23943.0	Mm.66056	NM_011843	ENSMUSG00000025366	Esyt1	Fam62a|Mbc2|vp115	extended synaptotagmin-like protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-140971811-4	chr4	140971703	140971903	+	829.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355515, intron 3 of 7)	intron (NM_001355515, intron 3 of 7)	10532.0	NM_023374	67680.0	Mm.246965	NM_023374	ENSMUSG00000009863	Sdhb	0710008N11Rik	succinate dehydrogenase complex, subunit B, iron sulfur (Ip)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-121474037-4	chr2	121473949	121474149	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081975)	promoter-TSS (NM_001081975)	-26.0	NM_001081975	100034361.0	Mm.270393	NM_001081975	ENSMUSG00000048222	Mfap1b	-	microfibrillar-associated protein 1B	protein-coding	5.26512908432061	6.11925476020309	5.93553972770016	5.02127723739012	5.83902427581998	5.64277741537009	5.15136374126465	5.21536879268068	-0.174939092156175	0.580238955730724	0.966366878242258
Merged-chr8-37010222-4	chr8	37010138	37010338	+	963.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_126063, intron 2 of 2)	intron (NR_126063, intron 2 of 2)	14000.0	NR_126063	414128.0	Mm.450976	NR_126063	ENSMUSG00000110242	G630064G18Rik	-	RIKEN cDNA G630064G18 gene	ncRNA	2.99380129184671	2.92916685357671	3.40409866957786	2.48229283635215	3.01843817180358	3.18170393520633	3.63831200585183	3.25124665604448	0.509076430052588	0.409750466136966	0.89372308288917
Merged-chr13-96432543-2	chr13	96432443	96432643	+	709.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001042714, intron 9 of 13)	intron (NM_001042714, intron 9 of 13)	38617.0	NM_001042714	271144.0	Mm.470057	NM_001042714	ENSMUSG00000047117	Ankdd1b	9330128J19Rik	ankyrin repeat and death domain containing 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34844715-2	chr17	34844552	34844752	+	761.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_105936)	TTS (NR_105936)	515.0	NR_105936	102465586.0		NR_105936	ENSMUSG00000098460	Mir6970	Gm27589|mmu-mir-6970	microRNA 6970	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139386028-2	chr5	139385928	139386128	+	836.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_030258, intron 1 of 1)	intron (NM_030258, intron 1 of 1)	-3876.0	NM_001038703	80290.0	Mm.270003	NM_030258	ENSMUSG00000044197	Gpr146	BC003323|D830046C22Rik|PGR8	G protein-coupled receptor 146	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-85289366-6	chr13	85289295	85289495	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145452)	promoter-TSS (NM_145452)	91.0	NM_145452	218397.0	Mm.259653	NM_145452	ENSMUSG00000021549	Rasa1	Gap|RasGAP|Rasa	RAS p21 protein activator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-143008194-4	chr7	143008098	143008298	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020286, intron 2 of 7)	intron (NM_020286, intron 2 of 7)	2539.0	NM_001128081	27027.0	Mm.28172	NM_020286	ENSMUSG00000000244	Tspan32	AW208513|Art-1|BB235973|D7Wsu37e|Phemx|Tssc6	tetraspanin 32	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-60409386-2	chr3	60409286	60409486	+	716.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63444.0	NM_001253713	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-181410869-4	chr2	181410764	181410964	+	882.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028125, exon 3 of 3)	3' UTR (NM_028125, exon 3 of 3)	13524.0	NM_027656	72147.0	Mm.486504	NM_027656	ENSMUSG00000027583	Zbtb46	2610019F01Rik|4933406L05Rik|BZEL|Btbd4	zinc finger and BTB domain containing 46	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191216236-2	chr1	191216136	191216336	+	588.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8218.0	NR_151547	100504360.0	Mm.16927	NM_001033188		D730003I15Rik	AU020850	RIKEN cDNA D730003I15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-92942153-1	chr6	92942053	92942253	+	853.0	f0_balb.idr	intron (NR_015530, intron 1 of 2)	intron (NR_015530, intron 1 of 2)	1571.0	NR_015530	330385.0	Mm.483472	NR_015530	ENSMUSG00000097462	9530026P05Rik	B430306B02	RIKEN cDNA 9530026P05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-24165836-4	chr10	24165714	24165914	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016797, intron 2 of 9)	intron (NM_016797, intron 2 of 9)	16497.0	NM_016797	53331.0	Mm.248042	NM_016797	ENSMUSG00000019998	Stx7	AI315064|AI317144|AW107239|Syn7	syntaxin 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-123796405-2	chr9	123796305	123796505	+	655.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110253, intron 16 of 17)	intron (NM_001110253, intron 16 of 17)	-10072.0	NM_030712	80901.0	Mm.124289	NM_030712	ENSMUSG00000048521	Cxcr6	BB217514|BONZO|STRL33	chemokine (C-X-C motif) receptor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165924828-2	chr2	165924728	165924928	+	665.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-39990.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	1.96265177121708	1.73694025941521	2.25083857616585	2.46747023374902	2.43343836263527	1.2625709245579	1.23328576459115	2.63554397092031	-0.14837966487689	0.888646614981622	0.998431161219273
Merged-chr13-73329585-2	chr13	73329485	73329685	+	740.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1103.0	NM_010888	407785.0	Mm.29897	NM_010888	ENSMUSG00000021606	Ndufs6	BC059730|IP13	NADH dehydrogenase (ubiquinone) Fe-S protein 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-12218688-1	chr18	12218588	12218788	+	642.0	f0_balb.idr	intron (NM_008720, intron 4 of 24)	B3|SINE|B2	17698.0	NM_008720	18145.0	Mm.3484	NM_008720	ENSMUSG00000024413	Npc1	A430089E03Rik|C85354|D18Ertd139e|D18Ertd723e|lcsd|nmf164|spm	NPC intracellular cholesterol transporter 1	protein-coding	-1.84446540621454	-1.66703209084435	-1.82297003008319	-1.83062437091832	-1.84230234211872	-1.6650127732569	-1.82086056797065	-1.82925424756847	0.037684011990387	0.991491645451152	1
Merged-chr17-34647100-4	chr17	34647004	34647204	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017406)	promoter-TSS (NM_017406)	-42.0	NM_017406	12915.0	Mm.4068	NM_017406	ENSMUSG00000015461	Atf6b	AA617266|ATF6beta|Creb-rp|Crebl1	activating transcription factor 6 beta	protein-coding	6.21593745655506	6.29885586108707	6.44966567184684	6.29633892294053	6.0854762750557	5.86667778320676	6.37881187409485	4.80389463044902	-0.462624589103099	0.100820682322881	0.494458880374175
Merged-chr8-94734165-2	chr8	94734065	94734265	+	570.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11519.0	NM_009137	20299.0	Mm.12895	NM_009137	ENSMUSG00000031779	Ccl22	ABCD-1|DCBCK|MDC|Scya22	chemokine (C-C motif) ligand 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-10545857-2	chr16	10545757	10545957	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177562, intron 1 of 22)	MIRb|SINE|MIR	518.0	NM_001204229	74374.0	Mm.159176	NM_177562	ENSMUSG00000068663	Clec16a	4932416N17Rik|curt|mKIAA0350	C-type lectin domain family 16, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27591947-3	chr17	27591772	27591972	+	890.361084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291046, intron 2 of 4)	intron (NM_001291046, intron 2 of 4)	-26145.0	NM_001002895	106672.0	Mm.61488	NM_001002895	ENSMUSG00000062753	AI413582	AI854251|Smim29	expressed sequence AI413582	protein-coding	2.20854696311418	1.58068567533463	2.49111970675709	2.72488320509718	1.62567532176478	1.80285511111111	1.91794797469074	2.23920506140338	-1.02638788781235	0.269856362823664	0.772975483326035
Merged-chr1-152798310-4	chr1	152798200	152798400	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1853.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-14190774-3	chr2	14190676	14190876	+	656.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081310, intron 1 of 3)	intron (NM_001081310, intron 1 of 3)	16252.0	NM_001081310	625286.0	Mm.158781	NM_001081310	ENSMUSG00000061531	Tmem236	2010003H20Rik|Fam23a|Gm613	transmembrane protein 236	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-52501512-3	chr1	52501420	52501620	+	866.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1072.0	NM_008667	17936.0	Mm.25903	NM_008667	ENSMUSG00000002881	Nab1	-	Ngfi-A binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-130841772-2	chr4	130841672	130841872	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49235.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-119328755-2	chr9	119328655	119328855	+	561.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6328.0	NM_133985	108737.0	Mm.293565	NM_133985	ENSMUSG00000036737	Oxsr1	2210022N24Rik|2810422B09Rik|AI462649|AW209236|Osr1|mKIAA1101	oxidative-stress responsive 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-186749880-2	chr1	186749780	186749980	+	577.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026041)	promoter-TSS (NM_026041)	-522.0	NM_026041	67223.0	Mm.289841	NM_026041	ENSMUSG00000001305	Rrp15	2810430M08Rik|5430437H21Rik	ribosomal RNA processing 15 homolog (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-83055414-4	chr3	83055318	83055518	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016784)	promoter-TSS (NM_016784)	-120.0	NM_016784	53317.0	Mm.286349	NM_016784	ENSMUSG00000027998	Plrg1	AA958940|C80566|Tango4	pleiotropic regulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-89257208-4	chr9	89257098	89257298	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45814.0	NM_001359993	107885.0	Mm.486274	NM_026829	ENSMUSG00000066442	Mthfs	1110034I12Rik|2310020H23Rik|AI119695	5, 10-methenyltetrahydrofolate synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-159225651-4	chr1	159225546	159225746	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6554.0	NM_001360878	26374.0	Mm.328135	NM_011931	ENSMUSG00000040782	Cop1	AI316802|C80879|Rfwd2	COP1, E3 ubiquitin ligase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-70974632-4	chr12	70974642	70974842	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001310595, exon 1 of 11)	5' UTR (NM_001310595, exon 1 of 11)	119.0	NM_011184	19167.0	Mm.296338	NM_011184	ENSMUSG00000060073	Psma3	Lmpc8	proteasome (prosome, macropain) subunit, alpha type 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-91123452-4	chr10	91123314	91123514	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133668, intron 2 of 7)	intron (NM_133668, intron 2 of 7)	549.0	NM_133668	18674.0	Mm.298	NM_133668	ENSMUSG00000061904	Slc25a3	5730556H19Rik|PTP|Phc	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-96365430-1	chr10	96365330	96365530	+	652.0	f0_balb.idr	Intergenic	Intergenic	139223.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-50763706-2	chr10	50763606	50763806	+	573.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198007, intron 34 of 41)	intron (NM_198007, intron 34 of 41)	-131945.0	NM_011376	20464.0	Mm.4774	NM_011376	ENSMUSG00000019913	Sim1	bHLHe14|mSIM1	single-minded family bHLH transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-26138422-2	chr2	26138322	26138522	+	697.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001256522, exon 2 of 2)	exon (NM_001256522, exon 2 of 2)	1121.0	NM_001256522	109299.0	Mm.389259	NM_001256521		Tmem250-ps	AI551216|C330006A16Rik	transmembrane protein 250, pseudogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102579271-3	chr12	102579172	102579372	+	786.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172584, intron 7 of 9)	intron (NM_172584, intron 7 of 9)	24331.0	NM_007693	12652.0	Mm.4137	NM_007693	ENSMUSG00000021194	Chga	ChrA|cgA	chromogranin A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45719110-2	chr7	45719010	45719210	+	874.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009077, intron 1 of 5)	intron (NM_009077, intron 1 of 5)	1039.0	NM_009077	19899.0	Mm.3459	NM_009077	ENSMUSG00000059070	Rpl18	L18|Rpl18a	ribosomal protein L18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167298918-1	chr2	167298818	167299018	+	544.0	f1_c57bl6.idr	3' UTR (NM_019835, exon 9 of 9)	3' UTR (NM_019835, exon 9 of 9)	50260.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-67462095-4	chr7	67462033	67462233	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-89275.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-102507575-2	chr15	102507475	102507675	+	567.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009582, intron 1 of 13)	ID_B1|SINE|B4	3125.0	NM_001358844	26404.0	Mm.172897	NM_009582	ENSMUSG00000023050	Map3k12	DLK|MUK|Zpk	mitogen-activated protein kinase kinase kinase 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-108574333-4	chr8	108574264	108574464	+	844.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_077224, intron 1 of 1)	intron (NR_077224, intron 1 of 1)	10313.0	NR_077224	109215.0	Mm.65282	NR_077224	ENSMUSG00000110613	Lncbate1	3010033K07Rik|Lnc-BATE1	brown adipose tissue enriched long non-coding RNA 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-142095757-4	chr4	142095648	142095848	+	948.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11444.0	NM_145402	214359.0	Mm.27587	NM_145402	ENSMUSG00000040616	Tmem51	BC003277	transmembrane protein 51	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-37880388-4	chr18	37880279	37880479	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007858, intron 16 of 26)	intron (NM_007858, intron 16 of 26)	-25719.0	NR_105945	102465592.0		NR_105945	ENSMUSG00000098706	Mir6979	Gm27524|mmu-mir-6979	microRNA 6979	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-89676721-2	chr18	89676621	89676821	+	613.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039173, intron 1 of 7)	L1_Mur2|LINE|L1	92415.0	NM_001039173	623279.0	Mm.447164	NM_001039173	ENSMUSG00000073514	Dok6	Dok-6	docking protein 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-42045438-4	chr19	42045326	42045526	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026152)	promoter-TSS (NM_026152)	-425.0	NM_026152	67432.0	Mm.24196	NM_026152	ENSMUSG00000025176	Hoga1	0610010D20Rik|Dhdpsl|Npl2	4-hydroxy-2-oxoglutarate aldolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-84838289-1	chr1	84838189	84838389	+	819.666687	f0_balb.idr	intron (NM_133975, intron 1 of 40)	intron (NM_133975, intron 1 of 40)	1015.0	NM_133975	14897.0	Mm.209265	NM_133975	ENSMUSG00000026219	Trip12	1110036I07Rik|6720416K24Rik|AA410158|Gtl6|TRIP-12	thyroid hormone receptor interactor 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-53569909-4	chr17	53569799	53569999	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151733, intron 1 of 16)	intron (NR_151733, intron 1 of 16)	2928.0	NR_151733	18519.0	Mm.255025	NM_020005	ENSMUSG00000000708	Kat2b	A930006P13Rik|AI461839|AW536563|Pcaf|p/CAF	K(lysine) acetyltransferase 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43044057-4	chr4	43043949	43044149	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045567, intron 1 of 7)	intron (NR_045567, intron 1 of 7)	2171.0	NR_045567	230088.0	Mm.260162	NM_172691	ENSMUSG00000036002	Fam214b	B230312A22Rik	family with sequence similarity 214, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-72961904-3	chr11	72961818	72962018	+	828.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016745, intron 1 of 21)	intron (NM_016745, intron 1 of 21)	749.0	NM_001163337	53313.0	Mm.6306	NM_016745	ENSMUSG00000020788	Atp2a3	SERCA3b|Serca3	ATPase, Ca++ transporting, ubiquitous	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-146010937-4	chr2	146010850	146011050	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	76166.0	NM_175280	78774.0	Mm.136347	NM_175280	ENSMUSG00000037143	Cfap61	4930529M08Rik|BB178539|BC024760	cilia and flagella associated protein 61	protein-coding	2.64535098549988	3.35255397950629	2.75415823853578	2.78895994008166	2.66758088712704	3.66651772424586	2.77580988903049	2.80334668061641	0.235660306296709	0.725940220745127	0.998431161219273
Merged-chr15-98793585-2	chr15	98793485	98793685	+	611.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_021279, exon 4 of 4)	3' UTR (NM_021279, exon 4 of 4)	3728.0	NM_021279	22408.0	Mm.1123	NM_021279	ENSMUSG00000022997	Wnt1	Int-1|Wnt-1|sw|swaying	wingless-type MMTV integration site family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-71237124-2	chr10	71237024	71237224	+	870.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009360, intron 1 of 6)	intron (NM_009360, intron 1 of 6)	920.0	NM_009360	21780.0	Mm.229292	NM_009360	ENSMUSG00000003923	Tfam	AI661103|Hmgts|mtTFA|tsHMG	transcription factor A, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139398005-4	chr5	139397916	139398116	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028469, intron 2 of 4)	intron (NM_028469, intron 2 of 4)	8112.0	NM_001038703	80290.0	Mm.270003	NM_030258	ENSMUSG00000044197	Gpr146	BC003323|D830046C22Rik|PGR8	G protein-coupled receptor 146	protein-coding	3.25547063333899	3.46632942478225	4.27985500660968	3.51482358168024	3.50810988546671	3.58970080308183	4.10682999490883	3.53275308096425	0.0245584179210812	0.962526576429945	0.998431161219273
Merged-chr11-51849346-2	chr11	51849246	51849446	+	589.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_199299, intron 1 of 11)	intron (NM_199299, intron 1 of 11)	8135.0	NM_199299	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-67804488-2	chr14	67804388	67804588	+	760.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177780, intron 25 of 51)	B3A|SINE|B2	55257.0	NR_105857	102465310.0		NR_105857	ENSMUSG00000098866	Mir6539	Gm27464|mir-6539|mmu-mir-6539	microRNA 6539	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-122014449-2	chr9	122014349	122014549	+	948.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18423.0	NM_153540	215494.0	Mm.402151	NM_153540	ENSMUSG00000066235	Pomgnt2	Ago61|C85492|Gtdc2	protein O-linked mannose beta 1,4-N-acetylglucosaminyltransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128065752-4	chr2	128065651	128065851	+	997.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028765, intron 14 of 17)	RLTR16|LTR|ERVK	-60287.0	NM_207681	12125.0	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-36930992-4	chr16	36930906	36931106	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030035, intron 20 of 21)	intron (NM_030035, intron 20 of 21)	-3977.0	NM_008225	15163.0	Mm.4091	NM_008225	ENSMUSG00000022831	Hcls1	AW213261|HS1	hematopoietic cell specific Lyn substrate 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-55978535-4	chr3	55978437	55978637	+	999.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030595, intron 30 of 57)	L2|LINE|L2	131432.0	NR_033592	71182.0	Mm.195603	NR_033592	ENSMUSG00000106572	4933417G07Rik	-	SEC13 homolog pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84982290-4	chr8	84982201	84982401	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3553.0	NM_008416	16477.0	Mm.1167	NM_008416	ENSMUSG00000052837	Junb	-	jun B proto-oncogene	protein-coding	3.28113549702119	3.58703772683796	3.55061645406243	3.72737250041456	3.38055553032542	3.52407448734558	3.10570712195921	3.61605536816366	-0.192208127383556	0.71593710980968	0.998431161219273
Merged-chr10-79533395-4	chr10	79533304	79533504	+	991.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302389, intron 1 of 5)	CpG	383.0	NM_001302442	50784.0	Mm.28873	NM_015817	ENSMUSG00000052151	Plpp2	Lpp2|PAP2-G|PAP2-gamma|PAP2c|Ppap2c	phospholipid phosphatase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-96934904-3	chr10	96934814	96935014	+	879.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-100854.0	NR_045358	75301.0	Mm.108650	NR_045358	ENSMUSG00000111924	4930556N09Rik	-	RIKEN cDNA 4930556N09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35845240-2	chr17	35845140	35845340	+	580.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001010833, intron 2 of 15)	intron (NM_001010833, intron 2 of 15)	3742.0	NM_001010833	240087.0	Mm.218511	NM_001010833	ENSMUSG00000061607	Mdc1	6820401C03|AA413496|Nfbd1|mKIAA0170	mediator of DNA damage checkpoint 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5602650-2	chr17	5602550	5602750	+	756.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	110050.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3363718-2	chr12	3363618	3363818	+	586.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	-1414.0	NM_008445	16570.0	Mm.7688	NM_008445	ENSMUSG00000020668	Kif3c	mKIAA4058	kinesin family member 3C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-6836936-4	chr13	6836861	6837061	+	840.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-188190.0	NM_001291071	56421.0	Mm.273874	NM_019703	ENSMUSG00000021196	Pfkp	1200015H23Rik|9330125N24Rik|ATP-PFK|PFK-C|PFK-P	phosphofructokinase, platelet	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-84619853-4	chr11	84619760	84619960	+	944.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME3Cz|LINE|L1	94200.0	NR_038057	78365.0	Mm.260345	NR_038057	ENSMUSG00000087211	Lhx1os	1500016L03Rik|Lhx1as	LIM homeobox 1, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-109962211-2	chr8	109962111	109962311	+	731.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_212447)	promoter-TSS (NM_212447)	-6.0	NM_028584	73608.0	Mm.86833	NM_028584	ENSMUSG00000001672	Marveld3	1810006A16Rik|AI642133|Marvd3|Mrvldc3	MARVEL (membrane-associating) domain containing 3	protein-coding	-0.499940950918087	-0.487518524828365	0.0891561271406926	-0.494726023626598	-0.499164980458282	-0.486601867615524	0.100277611126392	-0.494177430718284	0.0410194320726077	0.98816738256539	1
Merged-chr16-91438231-4	chr16	91438124	91438324	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26880.0	NR_077219	100503120.0	Mm.387130	NR_077219	ENSMUSG00000084866	A930006K02Rik	-	RIKEN cDNA A930006K02 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-35716678-2	chr8	35716580	35716780	+	1000.0	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	109879.0	NM_027998	71908.0	Mm.37817	NM_027998	ENSMUSG00000055976	Cldn23	2310014B08Rik	claudin 23	protein-coding	5.05930405880242	5.8234450721088	4.99088510129813	5.04090141735929	1.25583862845167	1.55900248165362	1.795687892481	1.38668823054269	-7.42104121945753	6.90351852771528e-12	1.8543675066163e-09
Merged-chr14-51266273-4	chr14	51266186	51266386	+	705.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10174.0	NM_053113	93726.0	Mm.153688	NM_053113	ENSMUSG00000047222	Rnase2a	Ear11	ribonuclease, RNase A family, 2A (liver, eosinophil-derived neurotoxin)	protein-coding	0.18970012455273	0.744908117100304	0.205610271254618	0.880478383038228	1.05146645835813	0.21498454989802	0.207304117321595	0.200703282566897	-0.309860528127778	0.880954843324782	1
Merged-chr9-99240766-3	chr9	99240658	99240858	+	917.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2583.0	NM_023873	68121.0	Mm.288739	NM_023873	ENSMUSG00000056267	Cep70	6720484E09Rik|Bite|C030018L16Rik	centrosomal protein 70	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-92696828-4	chr16	92696737	92696937	+	965.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_009821, exon 1 of 5)	5' UTR (NM_009821, exon 1 of 5)	492.0	NM_001111023	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-137736897-2	chr6	137736797	137736997	+	966.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_011499, intron 2 of 9)	intron (NM_011499, intron 2 of 9)	1815.0	NM_011499	20901.0	Mm.22584	NM_011499	ENSMUSG00000030224	Strap	AW557906|C78091|C79202|Unrip	serine/threonine kinase receptor associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-76608639-3	chr2	76608552	76608752	+	600.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	39342.0	NM_011871	23992.0	Mm.277250	NM_011871	ENSMUSG00000002731	Prkra	AV120107|PRK|Pact|RAX|lear	protein kinase, interferon inducible double stranded RNA dependent activator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27716515-4	chr2	27716406	27716606	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290482, intron 1 of 9)	intron (NM_001290482, intron 1 of 9)	5923.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-169532308-3	chr1	169532212	169532412	+	849.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023284)	promoter-TSS (NM_023284)	-848.0	NM_001355159	66977.0	Mm.151315	NM_023284	ENSMUSG00000026683	Nuf2	2410003C07Rik|AU044112|C85691|Cdca1|NUF2R	NUF2, NDC80 kinetochore complex component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-122369180-4	chr2	122369067	122369267	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001013829)	promoter-TSS (NM_001013829)	-249.0	NM_001013829	435684.0	Mm.458215	NM_001013829	ENSMUSG00000033256	Shf	-	Src homology 2 domain containing F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80838482-2	chr7	80838382	80838582	+	787.025024	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23626.0	NM_009553	22691.0	Mm.358645	NM_009553	ENSMUSG00000038797	Zscan2	Zfp-29|Zfp29	zinc finger and SCAN domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-117218686-4	chr4	117218599	117218799	+	973.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145637, intron 7 of 12)	intron (NM_001145637, intron 7 of 12)	33218.0	NM_001145637	381544.0	Mm.23504	NM_001033774	ENSMUSG00000060268	Armh1	1700012C08Rik|Gm1661|Gm1662|Ncrna00082	armadillo-like helical domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127918418-2	chr7	127918318	127918518	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360699, intron 3 of 10)	B2_Mm2|SINE|B2	5404.0	NM_001360699	67773.0	Mm.425492	NM_026370	ENSMUSG00000030801	Kat8	2010203C02Rik|5830450F21Rik|D7Ertd629e|MOF|MYST-1|Myst1	K(lysine) acetyltransferase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-23433950-4	chr5	23433830	23434030	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026984)	promoter-TSS (NM_026984)	423.0	NR_040469	269630.0	Mm.425231	NR_040469	ENSMUSG00000073147	5031425E22Rik	-	RIKEN cDNA 5031425E22 gene	ncRNA	5.39945517369742	4.97605189855538	4.9066733852786	5.18956757947073	4.84181293207007	5.13218983580727	3.39130512451457	5.02381126066593	-0.467190633524686	0.22794575455795	0.72106957756012
Merged-chr8-120670708-1	chr8	120670608	120670808	+	570.0	f1_c57bl6.idr	intron (NM_009941, intron 2 of 4)	intron (NM_009941, intron 2 of 4)	2388.0	NM_001293559	12857.0	Mm.386758	NM_009941	ENSMUSG00000031818	Cox4i1	AL024441|COX|COX IV-1|COXIV|Cox4|Cox4a|IV-1	cytochrome c oxidase subunit 4I1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-82318546-2	chr5	82318446	82318646	+	589.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-193833.0	NR_138557	67327.0	Mm.87058	NR_138557		1700031L13Rik	-	RIKEN cDNA 1700031L13 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-119415570-4	chr4	119415457	119415657	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001270435)	promoter-TSS (NM_001270435)	-36.0	NM_029286	73332.0	Mm.425204	NM_028506	ENSMUSG00000028637	Ccdc30	1700001O02Rik|1700041C02Rik|1700111D19Rik|4930445I03Rik	coiled-coil domain containing 30	protein-coding	-1.17367364971587	-1.14665061133654	-1.15856004380685	-1.16834280623128	-1.17310571790619	-1.14406978763884	-0.42938571406771	-1.16659169643457	2.89727187181404	0.396361616615464	1
Merged-chr6-145810779-2	chr6	145810679	145810879	+	553.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027760, intron 1 of 3)	ORR1C2|LTR|ERVL-MaLR	2396.0	NM_027760	71323.0	Mm.158669	NM_027760	ENSMUSG00000030259	Rassf8	5133400D11Rik|AA815821|AW123240|Hoj1|mHoj-1	Ras association (RalGDS/AF-6) domain family (N-terminal) member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-43786464-4	chr13	43786361	43786561	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009856, intron 2 of 4)	intron (NM_009856, intron 2 of 4)	1349.0	NM_001289915	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89426540-1	chr3	89426440	89426640	+	544.0	f1_c57bl6.idr	exon (NM_001113331, exon 8 of 12)	exon (NM_001113331, exon 8 of 12)	-3674.0	NM_001293766	68911.0	Mm.22521	NM_026869	ENSMUSG00000047824	Pygo2	1190004M21Rik	pygopus 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-67318855-2	chr7	67318755	67318955	+	557.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357324, intron 2 of 11)	L1M3|LINE|L1	54003.0	NM_001291192	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-33771132-4	chr17	33771027	33771227	+	980.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19A|LTR|ERVK	10448.0	NM_020581	57875.0	Mm.196189	NM_020581	ENSMUSG00000002289	Angptl4	Arp4|Bk89|Fiaf|Hfarp|Ng27|Pgar|Pgarg|Pp1158	angiopoietin-like 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-4348934-1	chr5	4348834	4349034	+	604.0	f1_balb.idr	Intergenic	IMPB_01|Satellite|Satellite	156567.0	NM_001042670	208595.0	Mm.129815	NM_001042670	ENSMUSG00000053178	Mterf1b	Gm9897	mitochondrial transcription termination factor 1b	protein-coding	0.453164185829296	1.0518236790158	0.476033950496437	0.96315253828267	0.455320735758177	0.489337595100333	1.53959659287204	1.09286895351187	0.98540083184609	0.568943070534605	0.962718661854691
Merged-chr9-62979651-2	chr9	62979551	62979751	+	697.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019663, intron 1 of 13)	intron (NM_019663, intron 1 of 13)	1228.0	NM_019663	56469.0	Mm.431253	NM_019663	ENSMUSG00000032405	Pias1	2900068C24Rik|Ddxbp1|GBP	protein inhibitor of activated STAT 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-4431007-1	chr10	4430907	4431107	+	811.0	f0_balb.idr	intron (NM_001358796, intron 1 of 13)	MTEb|LTR|ERVL-MaLR	1381.0	NM_025343	66084.0	Mm.153111	NM_025343	ENSMUSG00000019763	Rmnd1	0610042C05Rik|AA408137|AI462664|AW536662	required for meiotic nuclear division 1 homolog	protein-coding	1.61023375285046	1.93418338536819	1.74701854176585	1.69699496155096	1.7302899778073	1.08171991619215	1.06282082361686	2.10335414877828	-0.493875498325342	0.673575132243625	0.99440487726309
Merged-chr11-59839825-4	chr11	59839726	59839926	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011991)	promoter-TSS (NM_011991)	-59.0	NM_011991	26572.0	Mm.40	NM_011991	ENSMUSG00000019373	Cops3	Csn3|Sgn3	COP9 signalosome subunit 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-83799005-2	chr7	83798905	83799105	+	650.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-4166.0	NM_029335	75556.0	Mm.17649	NM_029335	ENSMUSG00000011154	Cfap161	1700026D08Rik|AW047638|AW551802	cilia and flagella associated protein 161	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-136827497-5	chr6	136827436	136827636	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021714, intron 1 of 11)	intron (NM_021714, intron 1 of 11)	680.0	NM_021714	60321.0	Mm.141197	NM_021714	ENSMUSG00000030216	Wbp11	2510026P17Rik|D6Wsu113e|Npwbp|SIPP1	WW domain binding protein 11	protein-coding	1.30033036361821	1.93185049521029	2.28701079867276	1.81421719411866	1.94701524559453	1.94627399650526	1.16033671786644	1.94158629021424	-0.257873482648803	0.80993181576443	0.998431161219273
Merged-chr12-98347862-2	chr12	98347762	98347962	+	703.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	79227.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21720580-2	chr9	21720480	21720680	+	913.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-2996.0	NM_001252658	16835.0	Mm.3213	NM_010700	ENSMUSG00000032193	Ldlr	Hlb301	low density lipoprotein receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3930372-2	chr19	3930272	3930472	+	673.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026316)	promoter-TSS (NM_026316)	-656.0	NM_026316	67689.0	Mm.109341	NM_026316	ENSMUSG00000024885	Aldh3b1	1700001N19Rik|ALDH4|ALDH7	aldehyde dehydrogenase 3 family, member B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-137107224-2	chr5	137107124	137107324	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8983.0	NM_201373	384309.0	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-45789602-2	chr19	45789502	45789702	+	548.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6049.0	NM_023799	76055.0	Mm.122725	NM_023799	ENSMUSG00000025220	Mgea5	Hy5|Ncoat|OGA	meningioma expressed antigen 5 (hyaluronidase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-60941903-2	chr10	60941803	60942003	+	576.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3771.0	NR_033616	73616.0	Mm.159038	NR_033616	ENSMUSG00000037247	Pldi	1700125F08Rik|Poldi	polymorphic derived intron containing	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-30630102-1	chr14	30630002	30630202	+	559.0	f1_balb.idr	Intergenic	Intergenic	-3894.0	NM_011103	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-11685424-2	chr16	11685324	11685524	+	580.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028964, intron 18 of 20)	intron (NM_028964, intron 18 of 20)	-94278.0	NR_126430	73761.0	Mm.39183	NR_126430		4833415N18Rik	-	RIKEN cDNA 4833415N18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-132735393-4	chr7	132735287	132735487	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347630, intron 3 of 3)	intron (NM_001347630, intron 3 of 3)	41529.0	NM_001347630	77938.0	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115187996-4	chr5	115187912	115188112	+	998.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310712, intron 1 of 5)	intron (NM_001310712, intron 1 of 5)	-1891.0	NM_001310715	29867.0	Mm.38551	NM_013879	ENSMUSG00000029544	Cabp1	caldendrin	calcium binding protein 1	protein-coding	4.05980312135527	3.27293332273099	3.2707965258994	3.95287185975857	4.33314929128157	4.22191865484613	2.91692527624263	4.08331680921424	0.419354354076432	0.428563910198047	0.903416445927044
Merged-chr2-71529199-2	chr2	71529099	71529299	+	965.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010053)	promoter-TSS (NM_010053)	-246.0	NM_010053	13390.0	Mm.475101	NM_010053	ENSMUSG00000041911	Dlx1	Dlx|Dlx-1	distal-less homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-90727444-4	chr16	90727348	90727548	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025642)	promoter-TSS (NM_025642)	-77.0	NM_025642	66578.0	Mm.180363	NM_025642	ENSMUSG00000022978	Mis18a	2610039C10Rik|2810018N07Rik	MIS18 kinetochore protein A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-160335251-4	chr2	160335143	160335343	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7749.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-118926490-4	chr2	118926366	118926566	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028117)	promoter-TSS (NM_028117)	-31.0	NM_028117	72136.0	Mm.486238	NM_028117	ENSMUSG00000074916	Chst14	2600016L03Rik|D4ST-1|D4st1	carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-118053240-4	chr10	118053143	118053343	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-88544.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	6.66199555649031	6.56729602428362	6.74230140210751	6.7344877887661	6.96091614667194	6.48442615394326	6.93869485495114	7.44383050492077	0.343505114949325	0.0950418176122572	0.477397401941879
Merged-chr4-141659403-3	chr4	141659308	141659508	+	706.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347237, intron 1 of 18)	intron (NM_001347237, intron 1 of 18)	4707.0	NM_001347237	69582.0	Mm.33220	NM_001033150	ENSMUSG00000028917	Plekhm2	2310034J19Rik|AI854247|mKIAA0842	pleckstrin homology domain containing, family M (with RUN domain) member 2	protein-coding	0.508406103025601	1.01324957422089	0.374743849035511	0.368789945468796	0.758244862883396	0.384156557060694	1.07781342226968	0.689104506238511	0.867329082952574	0.618124417898528	1
Merged-chr15-36497627-2	chr15	36497527	36497727	+	732.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175134)	promoter-TSS (NM_175134)	-836.0	NM_175134	68839.0	Mm.396537	NM_175134	ENSMUSG00000048307	Ankrd46	1110054N06Rik|AI314978|AI987733	ankyrin repeat domain 46	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-88277051-2	chr1	88276951	88277151	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172505, intron 2 of 4)	intron (NM_172505, intron 2 of 4)	506.0	NM_172505	212427.0	Mm.384762	NM_172505		A730008H23Rik	Fleg1	RIKEN cDNA A730008H23 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-54284515-4	chr6	54284419	54284619	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163640, intron 7 of 12)	intron (NM_001163640, intron 7 of 12)	11697.0	NM_023543	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122740102-2	chr5	122740002	122740202	+	770.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199676, intron 14 of 16)	intron (NM_001199676, intron 14 of 16)	32558.0	NM_001310718	18438.0	Mm.290884	NM_011026	ENSMUSG00000029470	P2rx4	AI504491|AW555605|D5Ertd444e|P2X4	purinergic receptor P2X, ligand-gated ion channel 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-86692977-2	chr4	86692846	86693046	+	777.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22887.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	-0.762134931911865	-1.09876178680431	-1.10932077542541	-1.11677691241123	-0.9800310931766	-1.09647360992224	-1.10693045184804	-0.957168268221212	-0.326174877361854	0.916031487962074	1
Merged-chr18-46451451-2	chr18	46451351	46451551	+	796.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	14365.0	NR_045438	72076.0	Mm.82766	NM_028086		Mospd4	2010013H21Rik	motile sperm domain containing 4	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-93335968-4	chr15	93335885	93336085	+	739.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028315, intron 2 of 4)	intron (NR_028315, intron 2 of 4)	950.0	NR_028315	67057.0	Mm.4714	NM_024189	ENSMUSG00000022634	Yaf2	2810021M11Rik	YY1 associated factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115701207-2	chr11	115701107	115701307	+	815.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_008163, intron 1 of 5)	B3|SINE|B2	-1279.0	NM_001313936	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119229128-4	chr11	119229012	119229212	+	894.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172443)	promoter-TSS (NM_172443)	540.0	NM_175430	207607.0	Mm.189885	NM_175430	ENSMUSG00000039963	Ccdc40	B930008I02Rik	coiled-coil domain containing 40	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-128133256-3	chr7	128133140	128133340	+	626.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021334, intron 6 of 29)	intron (NM_021334, intron 6 of 29)	3672.0	NM_021334	16411.0	Mm.22378	NM_021334	ENSMUSG00000030789	Itgax	AI449405|Cd11c|Cr4|N418	integrin alpha X	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-54772219-4	chr6	54772122	54772322	+	948.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-44694.0	NM_199143	387524.0	Mm.286149	NM_199143	ENSMUSG00000058446	Znrf2	1190002C14Rik|AU044205|D6Ertd365e	zinc and ring finger 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91841132-4	chr16	91841028	91841228	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110275, intron 18 of 28)	intron (NM_001110275, intron 18 of 28)	90502.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-50360809-2	chr15	50360709	50360909	+	708.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	528240.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-95149171-2	chr10	95149071	95149271	+	600.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A4-int|LTR|ERVL-MaLR	-3346.0	NR_131146	628062.0		NR_131146	ENSMUSG00000112481	Gm29684	-	predicted gene, 29684	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46512268-2	chr19	46512168	46512368	+	809.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_053100, intron 1 of 5)	B3A|SINE|B2	10620.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-16973562-6	chr5	16973549	16973749	+	952.4722289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	419748.0	NM_001289461	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-32179320-2	chr19	32179220	32179420	+	559.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 5 of 9)	intron (NM_144792, intron 5 of 9)	31693.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-51502313-4	chr1	51502136	51502336	+	693.137512	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23837.0	NM_001310549	109019.0	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-74762998-2	chr16	74762898	74763098	+	581.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358493, intron 1 of 28)	Lx3A|LINE|L1	329772.0	NM_001358491	268902.0	Mm.171736	NM_175549	ENSMUSG00000052516	Robo2	2600013A04Rik|9430089E08Rik|BB097918|D230004I22Rik|mKIAA1568	roundabout guidance receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-46739168-3	chr7	46739057	46739257	+	879.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	3823.0	NM_001357493	20208.0	Mm.148800	NM_009117	ENSMUSG00000074115	Saa1	Saa-1|Saa2	serum amyloid A 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-66861120-4	chr8	66861022	66861222	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163564, intron 1 of 7)	CpG	905.0	NM_001163564	234344.0	Mm.334561	NM_001163564	ENSMUSG00000014907	Naf1	Gm174	nuclear assembly factor 1 ribonucleoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-35399507-2	chr2	35399407	35399607	+	634.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001145821)	TTS (NM_001145821)	-2333.0	NM_001272040	74854.0	Mm.159338	NM_001080709	ENSMUSG00000079421	4930402F06Rik	-	RIKEN cDNA 4930402F06 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-52288082-4	chr9	52287964	52288164	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-119953.0	NM_001162921	244871.0	Mm.295686	NM_001162921	ENSMUSG00000035164	Zc3h12c	A230108E06|C230027N18Rik|mKIAA1726	zinc finger CCCH type containing 12C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80639267-3	chr7	80639175	80639375	+	760.044434	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040343, intron 3 of 4)	intron (NR_040343, intron 3 of 4)	3258.0	NR_040343	100504375.0	Mm.322881	NR_040343	ENSMUSG00000084821	Gm15880	-	predicted gene 15880	ncRNA	1.76133708872031	1.57140940425728	2.06384605340835	2.62094049398033	2.42585171415245	2.89710221112135	2.21622734738022	1.24551664744713	0.581370719298394	0.555660973954333	0.960175760754309
Merged-chr6-31067179-2	chr6	31067079	31067279	+	852.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4086.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-77534671-2	chr8	77534571	77534771	+	595.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14726.0	NM_001081240	102182.0	Mm.197630	NM_178903	ENSMUSG00000037134	Prmt9	AI931714|Prmt10	protein arginine methyltransferase 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-127507255-2	chr2	127507155	127507355	+	908.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_019789, intron 2 of 8)	intron (NM_019789, intron 2 of 8)	14137.0	NM_001291005	56461.0	Mm.315292	NM_019789	ENSMUSG00000079056	Kcnip3	4933407H12Rik|AI413860|Csen|DREAM|KChIP3|R74849	Kv channel interacting protein 3, calsenilin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-8660717-4	chr2	8660621	8660821	+	931.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-528794.0	NR_038180	73438.0	Mm.23558	NR_038180	ENSMUSG00000085580	1700061F12Rik	-	RIKEN cDNA 1700061F12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-47579599-7	chr19	47579526	47579726	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009289)	promoter-TSS (NM_009289)	-393.0	NM_009289	20874.0	Mm.281011	NM_009289	ENSMUSG00000025060	Slk	9A2|AV021402|AW411554|Etk4|SMAK|Stk2|mKIAA0204|mSLK	STE20-like kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-136905882-2	chr5	136905782	136905982	+	756.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-2268.0	NM_026073	67286.0	Mm.41779	NM_026073	ENSMUSG00000007987	Ift22	3110017O03Rik|AI835745|AI847427|Rabl5	intraflagellar transport 22	protein-coding	-1.5061220274826	-1.47360709383584	-1.48343987814663	-1.49151681994238	-1.50383953926072	-1.47147628845725	-1.0170701920923	-1.49007105122263	2.15652851593596	0.535359572134045	1
Merged-chr19-56801120-3	chr19	56801015	56801215	+	812.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_170757, intron 7 of 14)	intron (NM_170757, intron 7 of 14)	12568.0	NM_170757	213993.0	Mm.469677	NM_170757	ENSMUSG00000035173	Ccdc186	1810028B20Rik|A630007B06Rik|AI159700|Otg1	coiled-coil domain containing 186	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-24990616-4	chr19	24990510	24990710	+	981.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8919.0	NM_028785	76088.0	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	4.28876220919662	3.44607059595019	4.76251502401218	3.88937270609934	4.43435328594202	3.77497093830644	3.45800133259465	3.6971627560342	-0.389411893767875	0.431504715509872	0.904679012727573
Merged-chr8-77444887-4	chr8	77444698	77444898	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030113, intron 3 of 22)	intron (NM_030113, intron 3 of 22)	-72258.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-77290391-2	chr10	77290291	77290491	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_004429)	TTS (NR_004429)	31091.0	NM_030262	80294.0	Mm.203556	NM_030262	ENSMUSG00000020260	Pofut2	2310011G23Rik|AI256847|BC003494|C21orf80|FUT13	protein O-fucosyltransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-45784317-2	chr19	45784217	45784417	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_151594)	promoter-TSS (NR_151594)	-764.0	NM_023799	76055.0	Mm.122725	NM_023799	ENSMUSG00000025220	Mgea5	Hy5|Ncoat|OGA	meningioma expressed antigen 5 (hyaluronidase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100326233-2	chr11	100326133	100326333	+	857.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6BA|LTR|ERVK	6284.0	NM_011508	20918.0	Mm.13886	NM_011508	ENSMUSG00000035530	Eif1	Sui1-rs1	eukaryotic translation initiation factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-11602646-3	chr2	11602543	11602743	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152824, intron 1 of 11)	intron (NM_152824, intron 1 of 11)	556.0	NM_152824	76938.0	Mm.182769	NM_152824	ENSMUSG00000037197	Rbm17	2700027J02Rik	RNA binding motif protein 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-9173597-4	chr13	9173500	9173700	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001311117, exon 17 of 17)	3' UTR (NM_001311117, exon 17 of 17)	79719.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-101759366-2	chr12	101759266	101759466	+	892.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361987, intron 9 of 10)	intron (NM_001361987, intron 9 of 10)	-40843.0	NM_001082976	74413.0	Mm.275939	NM_028924	ENSMUSG00000021187	Tc2n	4933406D09Rik|Mtac2d1|Tac2-N	tandem C2 domains, nuclear	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119389968-4	chr11	119389859	119390059	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_035453)	promoter-TSS (NR_035453)	-513.0	NR_035453	100316690.0		NR_035453	ENSMUSG00000088015	Mir1932	mir-1932|mmu-mir-1932	microRNA 1932	ncRNA	6.05265913069287	5.49481266899672	5.42756256803254	6.6192158556283	6.04629874455002	6.55089592930257	5.33430558105742	6.06454062103308	0.0764181701218656	0.806054621400998	0.998431161219273
Merged-chr11-94365188-2	chr11	94365088	94365288	+	551.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_029600, exon 12 of 31)	exon (NM_029600, exon 12 of 31)	27788.0	NM_029600	76408.0	Mm.23942	NM_029600	ENSMUSG00000020865	Abcc3	1700019L09Rik|ABC31|MLP2|MOAT-D|MRP3	ATP-binding cassette, sub-family C (CFTR/MRP), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-185333013-2	chr1	185332923	185333123	+	914.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347212, intron 1 of 7)	intron (NM_001347212, intron 1 of 7)	864.0	NM_001347212	23827.0	Mm.227549	NM_011794	ENSMUSG00000026617	Bpnt1	BPntase	bisphosphate 3'-nucleotidase 1	protein-coding	-1.52696403314699	-1.49523967873556	-1.5048333853602	-1.51271394162622	-1.52473704212565	-1.49316068248889	-1.50266158046844	-1.06847079017215	2.01069003169785	0.564432837776867	1
Merged-chr1-39736457-1	chr1	39736357	39736557	+	661.0	f0_balb.idr	Intergenic	Intergenic	-15468.0	NM_001145660	619289.0	Mm.334107	NM_001145660	ENSMUSG00000057173	Rfx8	4933400N17Rik	regulatory factor X 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-35846-1	chr4	35746	35946	+	1000.0	f1_c57bl6.idr	Intergenic	Intergenic	-3136237.0	NM_001167534	100312470.0	Mm.480297	NM_001167534	ENSMUSG00000115072	Vmn1r2	Gm11776	vomeronasal 1 receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-81852220-1	chr7	81852120	81852320	+	641.0	f1_c57bl6.idr	Intergenic	Intergenic	-6781.0	NR_111910	107769.0	Mm.221412	NM_145375	ENSMUSG00000038623	Tm6sf1	AI428514|BC023123|C630016D09Rik	transmembrane 6 superfamily member 1	protein-coding	0.970966871644774	0.31628141550683	0.654315828799727	0.625887852748554	0.293942899532771	0.318023684193479	1.1233556576142	0.303557272907002	-0.461119256234558	0.806254253776744	1
Merged-chr12-111714445-1	chr12	111714345	111714545	+	921.0	f1_balb.idr	intron (NM_001163388, intron 1 of 5)	intron (NM_001163388, intron 1 of 5)	1176.0	NM_026511	68020.0	Mm.425762	NM_026511	ENSMUSG00000037787	Apopt1	1700081D05Rik|2810002N01Rik|Apop-1|Apop1	apoptogenic, mitochondrial 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-26563470-2	chr19	26563370	26563570	+	581.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41690.0	NM_011416	67155.0	Mm.491146	NM_011416	ENSMUSG00000024921	Smarca2	2610209L14Rik|SNF2alpha|Snf2l2|brahma|brm	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-60865172-4	chr2	60865066	60865266	+	999.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	16272.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-75831592-2	chr14	75831492	75831692	+	912.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13372.0	NR_045294	100043189.0	Mm.426329	NR_045294		Gm4285	-	predicted gene 4285	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-29047950-4	chr19	29047861	29048061	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021299)	promoter-TSS (NM_021299)	-59.0	NM_021299	56248.0	Mm.196067	NM_021299	ENSMUSG00000024782	Ak3	AA407498|AI506714|AK-3|Ak3l|Ak3l1|Akl3l	adenylate kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-147404698-3	chr4	147404609	147404809	+	844.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039209, intron 1 of 2)	RLTR11B|LTR|ERVK	-148568.0	NM_001014397	433804.0	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154	zinc finger protein 985	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-45730719-1	chr17	45730619	45730819	+	907.0	f1_c57bl6.idr	Intergenic	Intergenic	3125.0	NM_028164	72240.0	Mm.482897	NM_028164	ENSMUSG00000094690	1600014C23Rik	-	RIKEN cDNA 1600014C23 gene	protein-coding	1.50710964940427	1.20272271788783	1.49715608412039	1.34400528052732	0.598179869214555	0.636716729047112	0.624398754120282	0.613722938934427	-4.81952859947542	0.0026262750581183	0.0411000628008305
Merged-chr17-46933845-2	chr17	46933745	46933945	+	623.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146078, intron 45 of 46)	intron (NM_146078, intron 45 of 46)	23360.0	NM_008938	19133.0	Mm.291370	NM_008938	ENSMUSG00000023978	Prph2	AOFMD|AVMD|Nmf193|PRPH|RP7|Rd-2|Rd2|Rds|Tspan22|rds	peripherin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-34709482-4	chr6	34709390	34709590	+	981.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145575)	promoter-TSS (NM_145575)	46.0	NM_145575	109624.0	Mm.308134	NM_145575	ENSMUSG00000029761	Cald1	4833423D12Rik|AI195384|AV071549|AW536160|C920027I18Rik	caldesmon 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75655924-4	chr11	75655811	75656011	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080775)	promoter-TSS (NM_001080775)	-104.0	NM_001080775	17913.0	Mm.234502	NM_008659	ENSMUSG00000017774	Myo1c	C80397|MMIb|MYO1E|NMI|mm1beta|myr2	myosin IC	protein-coding	-2.18308165884198	-2.15547475440471	-2.16382331017202	-2.1706810624505	-2.18114370519566	-2.15366558754311	-2.03057248461154	-2.16945352807143	0.759018020146679	0.829933115115583	1
Merged-chr11-70696981-2	chr11	70696881	70697081	+	666.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252485, intron 1 of 7)	intron (NM_001252485, intron 1 of 7)	3174.0	NM_001252482	103844.0	Mm.101581	NM_213729	ENSMUSG00000057054	Inca1	AI842396	inhibitor of CDK, cyclin A1 interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129380956-4	chr2	129380861	129381061	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9822.0	NM_008361	16176.0	Mm.222830	NM_008361	ENSMUSG00000027398	Il1b	IL-1beta|Il-1b	interleukin 1 beta	protein-coding	3.67607115007371	3.76356373652416	3.64153883915692	4.06864358196091	2.96686275669074	3.71170104035618	3.22420676843612	3.013289374957	-0.836367220556781	0.114647879892857	0.530743892265557
Merged-chr1-161035791-5	chr1	161035719	161035919	+	934.3666380000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_151478)	promoter-TSS (NR_151478)	903.0	NR_153812	14455.0	Mm.270065	NR_002840	ENSMUSG00000053332	Gas5	Gas-5|Mir5117|Snhg2	growth arrest specific 5	ncRNA	2.63375778800655	2.42290573591503	2.03473589906177	1.97527388067528	1.88660076536843	1.41225530002529	3.35498321399961	3.01773406817294	0.744420483755374	0.413866791584839	0.89604345301985
Merged-chr1-167554245-3	chr1	167554177	167554377	+	948.7333369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44085.0	NM_009107	20183.0	Mm.3475	NM_009107	ENSMUSG00000015843	Rxrg	Nr2b3	retinoid X receptor gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-26827669-4	chr10	26827564	26827764	+	951.966675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176837, intron 1 of 14)	intron (NM_176837, intron 1 of 14)	55152.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-106895719-2	chr9	106895610	106895810	+	697.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_153413, exon 53 of 53)	exon (NM_153413, exon 53 of 53)	-3772.0	NM_029103	74840.0	Mm.29778	NM_029103	ENSMUSG00000032575	Manf	3230402M22Rik|AA407711|AA408789|AA673178|Armet|D17914|D18Mgi17	mesencephalic astrocyte-derived neurotrophic factor	protein-coding	0.906725883967268	1.41418623907028	0.497794334103115	0.48968038761475	1.02700157811166	0.510511960211217	0.500098337750546	1.30323462470832	-0.0320809830749844	0.985148631254013	0.998431161219273
Merged-chr9-118665664-4	chr9	118665566	118665766	+	987.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 8 of 27)	intron (NM_133721, intron 8 of 27)	-46026.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89774617-4	chr3	89774523	89774723	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027315, intron 1 of 12)	intron (NM_027315, intron 1 of 12)	1014.0	NM_027315	70093.0	Mm.41438	NM_027315	ENSMUSG00000042572	Ube2q1	1110002C01Rik|2310012M18Rik|AI854014|Gtap|NICE-5|PRO3094|Ube2q	ubiquitin-conjugating enzyme E2Q family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-54562842-2	chr9	54562742	54562942	+	727.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2763.0	NM_019686	56506.0	Mm.42192	NM_019686	ENSMUSG00000037493	Cib2	2810434I23Rik|AI449053	calcium and integrin binding family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-121508470-2	chr10	121508370	121508570	+	779.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-32220.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	-1.23826193677681	-1.21241040182355	-1.22270105026776	-0.934241458926562	-1.23783648736863	-1.21018037537722	-1.22037147302458	-0.929982742503718	0.0323590357436516	0.9924297640193	1
Merged-chr10-39435052-4	chr10	39434940	39435140	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122892, intron 2 of 12)	intron (NM_001122892, intron 2 of 12)	65241.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-54836223-2	chr7	54836133	54836333	+	829.125	f0_balb.idr|f1_balb.idr	intron (NM_178705, intron 1 of 11)	intron (NM_178705, intron 1 of 11)	988.0	NM_178705	233271.0	Mm.387344	NM_178705	ENSMUSG00000063297	Luzp2	9330154K17Rik|D130073E01	leucine zipper protein 2	protein-coding	1.11791206230372	1.53921035368858	2.06978516455951	2.14516723411593	3.27643074518703	1.55093630727675	3.06815826924054	2.15740132147734	2.0032037774311	0.0417310805346816	0.292503799799122
Merged-chr11-80474196-2	chr11	80474096	80474296	+	703.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2827.0	NM_009871	12569.0	Mm.142275	NM_009871	ENSMUSG00000048895	Cdk5r1	Cdk5r|D11Bwg0379e|p25|p35	cyclin-dependent kinase 5, regulatory subunit 1 (p35)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-15463590-4	chr6	15463494	15463694	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-257067.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97306295-1	chr6	97306195	97306395	+	1000.0	f1_balb.idr	intron (NM_145148, intron 17 of 23)	intron (NM_145148, intron 17 of 23)	-53515.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	-0.189536058955037	-0.168988386743124	-0.175644042864282	0.0112252329600767	-0.0161294247461594	0.949731477605433	0.0356375967006607	-0.179919822634594	3.27275752946145	0.124606081016104	1
Merged-chr18-34196069-4	chr18	34195963	34196163	+	906.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24921.0	NM_007462	11789.0	Mm.384171	NM_007462	ENSMUSG00000005871	Apc	AI047805|AU020952|AW124434|CC1|Min|mAPC	adenomatosis polyposis coli	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-21372032-1	chr12	21371932	21372132	+	819.0	f1_balb.idr	intron (NM_001291871, intron 1 of 18)	B1_Mur1|SINE|Alu	1600.0	NR_102380	11491.0	Mm.27681	NM_009615	ENSMUSG00000052593	Adam17	CD156b|Tace	a disintegrin and metallopeptidase domain 17	protein-coding	0.4430327059964	0.96787548054241	0.63993379085311	0.453157140299848	0.937780679246751	0.468863088946209	0.933062259804067	1.10314836190666	1.37216391546723	0.419847144856381	1
Merged-chr14-45251813-4	chr14	45251702	45251902	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027518, intron 3 of 6)	Lx7|LINE|L1	32085.0	NM_027518	70713.0	Mm.343793	NM_027518	ENSMUSG00000049092	Gpr137c	6330416L11Rik|Gm908|TM7SF1L2	G protein-coupled receptor 137C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-5992458-2	chr2	5992358	5992558	+	659.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081132, intron 8 of 21)	(A)n|Simple_repeat|Simple_repeat	40989.0	NM_001081132	326622.0	Mm.31102	NM_001081132	ENSMUSG00000043241	Upf2	-	UPF2 regulator of nonsense transcripts homolog (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166615681-2	chr2	166615581	166615781	+	971.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 7 of 39)	intron (NM_177782, intron 7 of 39)	51159.0	NR_152154	433503.0	Mm.491336	NR_152154		Gm29679	-	predicted gene, 29679	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-10819278-3	chr8	10819177	10819377	+	769.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	63177.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120714440-2	chr11	120714340	120714540	+	942.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016665)	promoter-TSS (NM_016665)	487.0	NM_153545	217366.0	Mm.347545	NM_153545	ENSMUSG00000025145	Lrrc45	BC023296	leucine rich repeat containing 45	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-12017479-1	chr10	12017379	12017579	+	548.0	f0_balb.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	408255.0	NM_013898	30058.0	Mm.214504	NM_013898	ENSMUSG00000048007	Timm8a1	DXHXS1274E|Ddp1|Fci-12|Tim8a|Timm8a	translocase of inner mitochondrial membrane 8A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-53855654-3	chr19	53855595	53855795	+	872.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170847, intron 12 of 13)	intron (NM_001170847, intron 12 of 13)	-36536.0	NM_011050	18569.0	Mm.1605	NM_011050	ENSMUSG00000024975	Pdcd4	D19Ucla1|Ma3|Tis	programmed cell death 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-104816006-7	chr2	104815902	104816102	+	905.8095089999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001123327, intron 1 of 11)	intron (NM_001123327, intron 1 of 11)	694.0	NM_001123327	99003.0	Mm.274314	NM_001123327	ENSMUSG00000074994	Qser1	4732486I23Rik|AI502974	glutamine and serine rich 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126771822-2	chr7	126771722	126771922	+	792.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_024228, intron 9 of 9)	B1_Mur4|SINE|Alu	-5153.0	NM_026875	66090.0	Mm.27114	NM_025347	ENSMUSG00000042675	Ypel3	0610043B10Rik|1190001G19Rik|Suap	yippee like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-60245159-2	chr9	60245059	60245259	+	618.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001040426, intron 7 of 17)	intron (NM_001040426, intron 7 of 17)	-103939.0	NM_172444	207596.0	Mm.28791	NM_172444	ENSMUSG00000032289	Thsd4	ADAMTSL-6|ADAMTSL6|AI585901|Adamtsl4|B230114P05Rik	thrombospondin, type I, domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-75835556-4	chr10	75835468	75835668	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010361)	promoter-TSS (NM_010361)	-687.0	NM_010361	14872.0	Mm.24118	NM_010361	ENSMUSG00000033318	Gstt2	AI266894|Yrs|mGSTT2	glutathione S-transferase, theta 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-43663654-2	chr7	43663554	43663754	+	669.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2B1|LTR|ERVL	-3493.0	NM_031181	83382.0	Mm.157702	NM_031181	ENSMUSG00000030474	Siglece	Cd170|Siglec12|Siglec5|Siglec9|Siglecl1|mSiglec-E	sialic acid binding Ig-like lectin E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70181302-4	chr14	70181211	70181411	+	901.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271407, intron 20 of 20)	intron (NM_001271407, intron 20 of 20)	-3639.0	NM_145978	213019.0	Mm.283968	NM_145978	ENSMUSG00000022090	Pdlim2	4732462F18Rik|Slim	PDZ and LIM domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-143180942-4	chr7	143180840	143181040	+	938.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008434, intron 2 of 15)	intron (NM_008434, intron 2 of 15)	73686.0	NM_008434	16535.0	Mm.439769	NM_008434	ENSMUSG00000009545	Kcnq1	AW559127|KVLQT1|Kcna9	potassium voltage-gated channel, subfamily Q, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69125378-4	chr11	69125297	69125497	+	974.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011786)	promoter-TSS (NM_011786)	-980.0	NM_011786	23801.0	Mm.41989	NM_011786	ENSMUSG00000020892	Aloxe3	e-LOX-3|eLOX-3	arachidonate lipoxygenase 3	protein-coding	3.73838878034646	3.22634063692386	3.62160294390242	3.0290123494086	3.50246948058788	2.34619538952966	3.42172322141933	3.31885183333476	-0.335867229445142	0.575832555991622	0.965286201225318
Merged-chr16-57960073-3	chr16	57959969	57960169	+	702.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-205332.0	NM_007739	12837.0	Mm.130388	NM_007739	ENSMUSG00000068196	Col8a1	Col8a-1	collagen, type VIII, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-89000805-6	chr11	89000692	89000892	+	856.638916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009546, intron 1 of 8)	intron (NM_009546, intron 1 of 8)	1389.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	3.82296682628585	4.97268208653916	2.38776017332038	4.434843181495	3.96794698128256	4.42548930268272	3.56074169201967	4.58060099833896	-0.00415586850432741	0.994079703885221	0.998431161219273
Merged-chr11-6391371-2	chr11	6391271	6391471	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3754.0	NM_001005867	52915.0	Mm.1144	NM_028601	ENSMUSG00000041164	Zmiz2	Zimp7	zinc finger, MIZ-type containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-99611082-2	chr6	99610982	99611182	+	637.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55689.0	NM_025829	66892.0	Mm.32889	NM_025829	ENSMUSG00000093661	Eif4e3	1300018P11Rik|AI451927|eIF4E-3	eukaryotic translation initiation factor 4E member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-8362301-4	chr10	8362205	8362405	+	912.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177387, intron 2 of 7)	intron (NM_177387, intron 2 of 7)	156520.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-155833384-3	chr4	155833282	155833482	+	648.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_025338)	TTS (NM_025338)	2113.0	NM_025338	66077.0	Mm.28999	NM_025338	ENSMUSG00000065990	Aurkaip1	0610033H09Rik|Aip|Akip|MRP-S38	aurora kinase A interacting protein 1	protein-coding	1.08088531237605	1.93467222092285	2.93671841141808	1.78094682359974	0.621755223464457	0.712923871554523	0.684977600012962	0.659892786678373	-5.61089986373823	9.7072811216845e-05	0.00303829457994706
Merged-chr2-11172339-4	chr2	11172236	11172436	+	984.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008859)	promoter-TSS (NM_008859)	-46.0	NM_008859	18761.0	Mm.329993	NM_008859	ENSMUSG00000026778	Prkcq	A130035A12Rik|AW494342|PKC-0|PKC-theta|PKCtheta|Pkcq	protein kinase C, theta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152546420-2	chr1	152546320	152546520	+	546.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 8 of 17)	intron (NM_016846, intron 8 of 17)	78797.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-22706123-4	chr8	22706021	22706221	+	908.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010546, exon 2 of 21)	exon (NM_010546, exon 2 of 21)	462.0	NM_010546	16150.0	Mm.277886	NM_010546	ENSMUSG00000031537	Ikbkb	AI132552|IKK-2|IKK-beta|IKK2|IKK[b]|IKKbeta	inhibitor of kappaB kinase beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85142989-3	chr12	85142888	85143088	+	780.466675	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146244, intron 4 of 10)	intron (NM_146244, intron 4 of 10)	8276.0	NM_146244	238323.0	Mm.44829	NM_146244	ENSMUSG00000019235	Rps6kl1	A830084F09Rik|AW046440	ribosomal protein S6 kinase-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-54433869-6	chr14	54433925	54434125	+	951.388916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008608, intron 1 of 9)	intron (NM_008608, intron 1 of 9)	2427.0	NM_008608	17387.0	Mm.280175	NM_008608	ENSMUSG00000000957	Mmp14	AI325305|MMP-X1|MT-MMP-1|MT1-MMP|sabe	matrix metallopeptidase 14 (membrane-inserted)	protein-coding	0.251898512741252	0.193006174589255	-0.0134156568208266	-0.0179433898395388	0.25877406398009	-0.00624586270814284	-0.0121232826528192	0.889961415248932	1.75317832033168	0.404115131624598	1
Merged-chr11-20068577-2	chr11	20068494	20068694	+	700.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_146243, intron 8 of 8)	intron (NM_146243, intron 8 of 8)	44357.0	NM_146243	66713.0	Mm.259045	NM_146243	ENSMUSG00000020152	Actr2	4921510D23Rik|AA409782|Arp2|D6Ertd746e	ARP2 actin-related protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-83524334-3	chr13	83524212	83524412	+	952.638855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347568)	promoter-TSS (NM_001347568)	-431.0	NM_001347567	17260.0	Mm.24001	NM_025282	ENSMUSG00000005583	Mef2c	5430401D19Rik|9930028G15Rik|AV011172|Mef2	myocyte enhancer factor 2C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126921039-4	chr8	126920930	126921130	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24891.0	NM_024214	67952.0	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-92610056-4	chr13	92609888	92610088	+	822.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1150.0	NM_172588	218442.0	Mm.297970	NM_172588	ENSMUSG00000021703	Serinc5	A130038L21Rik|AIGP3|C86123|TPO1	serine incorporator 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-118869233-5	chr10	118869181	118869381	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001014390)	promoter-TSS (NM_001014390)	-378.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-45100866-4	chr2	45100772	45100972	+	998.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149354, intron 2 of 2)	intron (NR_149354, intron 2 of 2)	9405.0	NM_001289521	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-42628305-2	chr2	42628205	42628405	+	674.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_053011, intron 1 of 90)	Lx4B|LINE|L1	25293.0	NM_053011	94217.0	Mm.441398	NM_053011	ENSMUSG00000049252	Lrp1b	9630004P12Rik|LRP-DIT	low density lipoprotein-related protein 1B (deleted in tumors)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-61932269-1	chr16	61932169	61932369	+	769.0	f1_balb.idr	Intergenic	L1VL1|LINE|L1	854447.0	NM_178925	106338.0	Mm.26321	NM_178925	ENSMUSG00000050312	Nsun3	6720484A09Rik|AU022521	NOL1/NOP2/Sun domain family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141559349-4	chr4	141559249	141559449	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13187.0	NR_030695	320456.0	Mm.32859	NM_177163		B330016D10Rik	-	RIKEN cDNA B330016D10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3882464-4	chr19	3882344	3882544	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271496, intron 3 of 11)	intron (NM_001271496, intron 3 of 11)	22786.0	NM_016921	27060.0	Mm.271689	NM_016921	ENSMUSG00000001750	Tcirg1	ATP6N1C|ATP6a3|Atp6i|OC-116|OPTB1|Stv1|TIRC7|Vph1|oc	T cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 protein A3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119390965-3	chr11	119390874	119391074	+	936.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_035453)	TTS (NR_035453)	502.0	NR_035453	100316690.0		NR_035453	ENSMUSG00000088015	Mir1932	mir-1932|mmu-mir-1932	microRNA 1932	ncRNA	2.05184875953774	1.81441152044227	1.16821908954521	1.84181291193071	2.37331689984428	1.19710265292552	2.03573716821908	2.17764802936754	0.715142133755831	0.51327647397578	0.94619324199876
Merged-chr10-80507555-2	chr10	80507455	80507655	+	952.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_139226, intron 1 of 1)	intron (NM_139226, intron 1 of 1)	12649.0	NM_139226	246086.0	Mm.250572	NM_139226	ENSMUSG00000045518	Onecut3	OC-3|Oc3	one cut domain, family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-16237841-2	chr9	16237741	16237941	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080814, intron 2 of 24)	intron (NM_001080814, intron 2 of 24)	140390.0	NM_001080814	270120.0	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT atypical cadherin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-68695972-3	chr14	68695884	68696084	+	926.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40142.0	NM_183366	13522.0	Mm.117450	NM_010082	ENSMUSG00000014725	Adam28	C130072N01Rik|D430033C21Rik|Dtgn1|MDC-L|MDCL|TECADAM|eMDCII	a disintegrin and metallopeptidase domain 28	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141562822-2	chr7	141562722	141562922	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357068, intron 1 of 21)	intron (NM_001357068, intron 1 of 21)	642.0	NM_007459	11772.0	Mm.253090	NM_007459	ENSMUSG00000002957	Ap2a2	2410074K14Rik|AF006990|AW146353|Adtab|C78001|L25	adaptor-related protein complex 2, alpha 2 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-21847577-4	chr4	21847479	21847679	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025669)	promoter-TSS (NM_025669)	-4.0	NM_025669	66625.0	Mm.100117	NM_025669	ENSMUSG00000028248	Pnisr	5730406M06Rik|AA673174|Pinsr|Sfrs18|Srsf18	PNN interacting serine/arginine-rich	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-97171894-4	chr7	97171806	97172006	+	965.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162477, intron 1 of 9)	intron (NM_001162477, intron 1 of 9)	90155.0	NM_010248	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	2.48842337252666	1.80851068342644	3.62416554469802	2.90624290862069	2.50966254784336	2.25219185232773	2.33914696007103	2.74141072267808	-0.787304721163189	0.321921753889183	0.823903365381149
Merged-chr10-19591897-4	chr10	19591799	19591999	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010511)	promoter-TSS (NM_010511)	-50.0	NM_010511	15979.0	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	6.45242490789864	5.96016661197854	6.5082703947217	6.12848791126433	6.65441816410546	6.491388029366	6.21553574637792	6.70787257702097	0.267928125730592	0.215566407665076	0.706180188649098
Merged-chr4-132527417-2	chr4	132527317	132527517	+	603.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7997.0	NM_007512	11983.0	Mm.2171	NM_007512	ENSMUSG00000054428	Atpif1	Atpi|IF(1)|If1	ATPase inhibitory factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-32064126-4	chr16	32064047	32064247	+	978.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177326, intron 1 of 14)	LTR16E2|LTR|ERVL	15195.0	NM_177326	224105.0	Mm.234204	NM_177326	ENSMUSG00000022781	Pak2	5330420P17Rik|A130002K10Rik|AI836325|D16Ertd269e|PAK-2|mKIAA4182	p21 (RAC1) activated kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71668272-4	chr8	71668164	71668364	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029873, intron 1 of 41)	intron (NM_001029873, intron 1 of 41)	3493.0	NM_001029873	382018.0	Mm.334606	NM_001029873	ENSMUSG00000034799	Unc13a	2410078G03Rik|Munc13-1	unc-13 homolog A (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4924495-2	chr16	4924395	4924595	+	764.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001357061, exon 11 of 16)	exon (NM_001357061, exon 11 of 16)	-14616.0	NM_001316715	66911.0	Mm.428698	NM_025839	ENSMUSG00000022516	Nudt16l1	1110001K21Rik|5330437I08Rik|Sdos	nudix (nucleoside diphosphate linked moiety X)-type motif 16-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-39003962-2	chr2	39003862	39004062	+	823.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_025592, intron 3 of 3)	intron (NM_025592, intron 3 of 3)	1169.0	NM_025592	66489.0	Mm.345333	NM_025592	ENSMUSG00000062997	Rpl35	2410039E09Rik	ribosomal protein L35	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-8635889-2	chr16	8635789	8635989	+	549.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_025708, exon 2 of 2)	exon (NM_025708, exon 2 of 2)	1812.0	NM_025708	66690.0	Mm.10068	NM_025708	ENSMUSG00000043140	Tmem186	2810440M13Rik|4432406C05Rik|AI648175|AW210586	transmembrane protein 186	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-84129376-4	chr3	84129331	84129531	+	849.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029797, intron 4 of 7)	intron (NM_029797, intron 4 of 7)	26355.0	NM_029797	76915.0	Mm.274829	NM_029797	ENSMUSG00000033752	Mnd1	2610034E18Rik|AI591601|Gaj	meiotic nuclear divisions 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-84655060-2	chr3	84654960	84655160	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-11132.0	NM_177260	320782.0	Mm.107370	NM_177260	ENSMUSG00000056498	Tmem154	9930117H01Rik	transmembrane protein 154	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33954935-4	chr16	33954829	33955029	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009471, exon 6 of 6)	3' UTR (NM_009471, exon 6 of 6)	12109.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-132234586-2	chr2	132234486	132234686	+	748.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	13202.0	NM_027478	70612.0	Mm.30116	NM_027478	ENSMUSG00000027341	Tmem230	5730494N06Rik|AA407821	transmembrane protein 230	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-152286725-2	chr4	152286625	152286825	+	943.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008237, exon 5 of 5)	3' UTR (NM_008237, exon 5 of 5)	4937.0	NM_008237	15207.0	Mm.3516	NM_008237	ENSMUSG00000028946	Hes3	Hes-3|bHLHb43	hes family bHLH transcription factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-84147531-4	chr10	84147443	84147643	+	949.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46846.0	NR_152790	102637349.0	Mm.402869	NR_152790	ENSMUSG00000111049	Gm34184	-	predicted gene, 34184	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-92328173-3	chr5	92328067	92328267	+	946.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008599)	promoter-TSS (NM_008599)	-88.0	NM_008599	17329.0	Mm.766	NM_008599	ENSMUSG00000029417	Cxcl9	BB139920|CMK|Mig|MuMIG|Scyb9|crg-10	chemokine (C-X-C motif) ligand 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30440829-2	chr2	30440729	30440929	+	972.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_138748, intron 8 of 9)	intron (NM_138748, intron 8 of 9)	24779.0	NM_138748	110854.0	Mm.275393	NM_138748	ENSMUSG00000039515	Ptpa	2610042B21Rik|C77440|N28142|PR53|Ppp2r4	protein phosphatase 2 protein activator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-77033516-4	chr14	77033409	77033609	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172488, intron 4 of 7)	intron (NM_172488, intron 4 of 7)	3108.0	NM_172488	210808.0	Mm.89278	NM_172488	ENSMUSG00000044350	Lacc1	9030625A04Rik	laccase domain containing 1	protein-coding	5.19806085389697	5.1518776986071	5.61320645192652	5.11729296724392	4.92132519134804	4.8262557260679	5.10793404569125	5.48140507637014	-0.203208658389237	0.510148196946192	0.945041303754863
Merged-chr1-87205234-3	chr1	87205146	87205346	+	631.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009604)	promoter-TSS (NM_009604)	-565.0	NM_009604	11449.0	Mm.2810	NM_009604	ENSMUSG00000026253	Chrng	Achr-3|Acrg	cholinergic receptor, nicotinic, gamma polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-55457689-2	chr11	55457589	55457789	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009720, intron 1 of 3)	intron (NM_009720, intron 1 of 3)	3519.0	NM_009720	11927.0	Mm.217759	NM_009720	ENSMUSG00000018585	Atox1	AI256639|Atx1	antioxidant 1 copper chaperone	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-49052691-2	chr13	49052591	49052791	+	915.666626	f1_balb.idr|f1_c57bl6.idr	exon (NM_029361, exon 24 of 28)	exon (NM_029361, exon 24 of 28)	84579.0	NR_015601	68128.0	Mm.426304	NR_015601		Fam120aos	C030044B11Rik	family with sequence similarity 120A, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-24165865-2	chr5	24165765	24165965	+	946.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153092, intron 1 of 6)	intron (NM_153092, intron 1 of 6)	902.0	NM_001346582	231042.0	Mm.45513	NM_153092	ENSMUSG00000048439	Nupl2	AV116043|CG1|NLP-1|Nlp1	nucleoporin like 2	protein-coding	-0.24248260857109	0.228586650629589	-0.504897706675337	-0.507947291628236	-0.363473842223679	-0.500053521428066	-0.504025870807826	-0.507414555658957	-2.60725346128066	0.307937572068154	1
Merged-chr5-35751235-2	chr5	35751135	35751335	+	769.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6645.0	NM_001177697	231148.0	Mm.254446	NM_177678	ENSMUSG00000029095	Ablim2	AI606905|C230091L11	actin-binding LIM protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83658238-2	chr11	83658138	83658338	+	616.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4346.0	NM_013652	20303.0	Mm.244263	NM_013652	ENSMUSG00000018930	Ccl4	AT744.1|Act-2|MIP-1B|Mip1b|Scya4	chemokine (C-C motif) ligand 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59752451-4	chr15	59752349	59752549	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	42510.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-151536863-4	chr2	151536780	151536980	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5603.0	NR_126058	14225.0	Mm.278458	NM_008019	ENSMUSG00000032966	Fkbp1a	FKBP12|Fkbp|Fkbp1	FK506 binding protein 1a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-41191163-1	chr17	41191063	41191263	+	614.0	f1_balb.idr	Intergenic	ETnERV-int|LTR|ERVK	256478.0	NM_008650	17850.0	Mm.259884	NM_008650	ENSMUSG00000023921	Mut	D230010K02Rik|Mcm	methylmalonyl-Coenzyme A mutase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-24653833-4	chr18	24653744	24653944	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_026779, exon 1 of 15)	5' UTR (NM_026779, exon 1 of 15)	153.0	NM_026779	68591.0	Mm.28252	NM_026779	ENSMUSG00000039616	Mocos	1110018O12Rik|HMCS|MCS|MOS	molybdenum cofactor sulfurase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-46544746-3	chr18	46544664	46544864	+	955.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-18793.0	NM_173423	240263.0	Mm.38249	NM_173423	ENSMUSG00000033319	Fem1c	2610312A07Rik|3632443A22Rik|AI646567	fem-1 homolog c (C.elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-104641726-4	chr8	104641641	104641841	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026753)	promoter-TSS (NM_026753)	-13.0	NM_026753	68523.0	Mm.279	NM_026753	ENSMUSG00000031879	Fam96b	1110019N10Rik	family with sequence similarity 96, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85518408-4	chr12	85518311	85518511	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44521.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-102186381-4	chr2	102186272	102186472	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290784)	promoter-TSS (NM_001290784)	88.0	NM_178886	241576.0	Mm.489740	NM_178886	ENSMUSG00000048058	Ldlrad3	6430500P08|AI194318|Lrad3	low density lipoprotein receptor class A domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-29304678-2	chr7	29304578	29304778	+	712.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_013874, intron 1 of 11)	CpG	673.0	NM_013874	29861.0	Mm.101885	NM_013874	ENSMUSG00000030584	Dpf1	Neud4	D4, zinc and double PHD fingers family 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-7503454-4	chr3	7503339	7503539	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173181)	promoter-TSS (NM_173181)	13.0	NM_173181	67306.0	Mm.332366	NM_173181	ENSMUSG00000043542	Zc2hc1a	3110050N22Rik|AI790358|AU023959|Fam164a	zinc finger, C2HC-type containing 1A	protein-coding	5.15276684496598	4.82384914554871	5.08879873692591	5.22007252046353	5.10957748754124	5.41395685663177	4.97210541576653	4.57044033936259	-0.0462803411796927	0.885263597363557	0.998431161219273
Merged-chr19-25203355-1	chr19	25203255	25203455	+	557.0	f1_c57bl6.idr	TTS (NM_028785)	TTS (NM_028785)	-33620.0	NM_181404	107351.0	Mm.260722	NM_181404	ENSMUSG00000032702	Kank1	A930031B09Rik|AU015049|AW121052|Ankrd15|D330024H06Rik|mKIAA0172	KN motif and ankyrin repeat domains 1	protein-coding	-0.14963318186592	0.213880728526791	0.419491200300301	0.380772214474247	-0.148729287106963	-0.134054287573079	-0.138837005545449	-0.142912631820522	-3.79930785624121	0.098376819462383	1
Merged-chr5-134965589-2	chr5	134965489	134965689	+	727.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18655.0	NM_009903	12740.0	Mm.7339	NM_009903	ENSMUSG00000047501	Cldn4	Cep-r|Cpetr|Cpetr1	claudin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124319722-4	chr6	124319630	124319830	+	973.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170395, intron 10 of 16)	intron (NM_001170395, intron 10 of 16)	15079.0	NM_053094	93671.0	Mm.37426	NM_053094	ENSMUSG00000008845	Cd163	CD163v2|CD163v3	CD163 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-89075418-4	chr15	89075303	89075503	+	963.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355617)	promoter-TSS (NM_001355617)	451.0	NR_040417	69120.0	Mm.276391	NR_040417	ENSMUSG00000087331	1810021B22Rik	-	RIKEN cDNA 1810021B22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141268610-4	chr7	141268536	141268736	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_028069)	TTS (NM_028069)	-2212.0	NM_001252600	54123.0	Mm.3233	NM_016850	ENSMUSG00000025498	Irf7	-	interferon regulatory factor 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-14362869-4	chr16	14362813	14363013	+	863.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008576, intron 1 of 30)	intron (NM_008576, intron 1 of 30)	1355.0	NM_008576	17250.0	Mm.196634	NM_008576	ENSMUSG00000023088	Abcc1	Abcc1a|Abcc1b|MRP|Mdrap|Mrp1	ATP-binding cassette, sub-family C (CFTR/MRP), member 1	protein-coding	2.35642001012618	3.26617232776925	3.24887993925893	3.39133510297468	3.25031881981762	2.82319360728852	3.35808638273895	3.33550529904276	0.154466650618179	0.80391361882215	0.998431161219273
Merged-chr11-60211032-3	chr11	60210942	60211142	+	928.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358314)	promoter-TSS (NM_001358314)	-571.0	NM_001358314	20787.0	Mm.278701	NM_011480	ENSMUSG00000020538	Srebf1	ADD1|SREBP1|bHLHd1	sterol regulatory element binding transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47609384-4	chr17	47609277	47609477	+	982.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016859, intron 1 of 6)	L2|LINE|L2	2115.0	NM_016859	53414.0	Mm.472101	NM_016859	ENSMUSG00000023988	Bysl	Bys|Enp1	bystin-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-38010631-3	chr19	38010548	38010748	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302140, intron 3 of 53)	intron (NM_001302140, intron 3 of 53)	32929.0	NM_001099634	226101.0	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding	4.39994629926315	4.53479733390861	5.03799463697114	4.98270565033988	5.49495686004826	5.8413480466318	4.1553079199939	5.16917233387533	0.626074462639449	0.102616863948068	0.498460377995516
Merged-chr15-78901460-1	chr15	78901360	78901560	+	805.0	f1_c57bl6.idr	exon (NM_001316684, exon 3 of 18)	exon (NM_001316684, exon 3 of 18)	1692.0	NM_009164	20401.0	Mm.4462	NM_009164	ENSMUSG00000022436	Sh3bp1	3BP-1	SH3-domain binding protein 1	protein-coding	2.38895394651167	0.968010735011229	2.4136590316325	1.52305384044436	1.90676959595194	0.973250708625382	0.949545432088957	1.36555216224969	-1.6823689409837	0.184548247725589	0.660169909425049
Merged-chr3-130715266-6	chr3	130715104	130715304	+	935.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5760.0	NM_025509	66357.0	Mm.300697	NM_025509	ENSMUSG00000041084	Ostc	2310008M10Rik|5730557H03Rik	oligosaccharyltransferase complex subunit (non-catalytic)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-10039744-4	chr1	10039638	10039838	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026493, intron 1 of 29)	GC_rich|Low_complexity|Low_complexity	1520.0	NM_026493	211660.0	Mm.244046	NM_026493	ENSMUSG00000056763	Cspp1	2310020J12Rik|4930413O22Rik|AA387550|BC055915|Cspp2|Cspp3	centrosome and spindle pole associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106200957-2	chr11	106200857	106201057	+	753.333313	f1_balb.idr|f1_c57bl6.idr	exon (NM_026009, exon 13 of 13)	exon (NM_026009, exon 13 of 13)	-7354.0	NM_001252449	72149.0	Mm.403722	NM_028126	ENSMUSG00000069631	Strada	2610019A05Rik|6030402H20Rik|AI480680|E130112C09Rik	STE20-related kinase adaptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-162838097-1	chr1	162837997	162838197	+	793.666687	f0_balb.idr	intron (NM_010231, intron 5 of 8)	intron (NM_010231, intron 5 of 8)	21903.0	NM_001330291	14261.0	Mm.976	NM_010231	ENSMUSG00000040181	Fmo1	-	flavin containing monooxygenase 1	protein-coding	2.30190726521535	1.38731589130342	1.33958662320301	1.80611570864334	3.39338071553479	3.31024378062625	2.76744658688638	3.16744812460962	2.92801357798213	0.000665198075207988	0.0140312990384346
Merged-chr11-114885887-6	chr11	114885727	114885927	+	856.9722289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4214.0	NM_001347654	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-95842274-4	chr11	95842215	95842415	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001284397)	promoter-TSS (NM_001284397)	20.0	NM_001284393	14710.0	Mm.46299	NM_023121	ENSMUSG00000038811	Gngt2	AV096488	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-40917451-5	chr13	40917316	40917516	+	760.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133219)	promoter-TSS (NM_133219)	-218.0	NM_133219	14538.0	Mm.314757	NM_008105	ENSMUSG00000021360	Gcnt2	5330430K10Rik|IGnT|IGnTA|IGnTB|IGnTC	glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122415768-3	chr8	122415658	122415858	+	856.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029993, intron 17 of 18)	B3|SINE|B2	-6262.0	NM_145834	234836.0	Mm.222808	NM_145834	ENSMUSG00000046108	Il17c	IL-17C	interleukin 17C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45019530-2	chr7	45019430	45019630	+	674.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360132)	promoter-TSS (NM_001360132)	60.0	NM_001360132	20130.0	Mm.389894	NM_009101	ENSMUSG00000038387	Rras	AI573426	related RAS viral (r-ras) oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-44979642-3	chr2	44979540	44979740	+	862.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43537.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-92940337-1	chr6	92940237	92940437	+	669.0	f0_balb.idr	promoter-TSS (NR_015530)	promoter-TSS (NR_015530)	-245.0	NR_015530	330385.0	Mm.483472	NR_015530	ENSMUSG00000097462	9530026P05Rik	B430306B02	RIKEN cDNA 9530026P05 gene	ncRNA	-1.7024385483431	-1.81249224917775	-1.82134771053534	-1.82862185015837	-1.70038292649591	-1.81057323376012	-1.81934302819017	-1.82731978264371	0.0376840119903864	0.991491645451152	1
Merged-chr15-99875495-4	chr15	99875386	99875586	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113545)	promoter-TSS (NM_001113545)	-30.0	NM_001113545	65970.0	Mm.33207	NM_023063	ENSMUSG00000023022	Lima1	Eplin	LIM domain and actin binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56035767-2	chr17	56035667	56035867	+	759.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357649, intron 1 of 10)	intron (NM_001357649, intron 1 of 10)	870.0	NM_013664	20405.0	Mm.1773	NM_013664	ENSMUSG00000003200	Sh3gl1	C77078|EEN|SH3P8|Sh3d2b	SH3-domain GRB2-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-122885032-4	chr4	122884881	122885081	+	821.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007598, intron 1 of 12)	intron (NM_007598, intron 1 of 12)	1095.0	NM_001358035	12331.0	Mm.8687	NM_007598	ENSMUSG00000028656	Cap1	-	CAP, adenylate cyclase-associated protein 1 (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-8843505-2	chr4	8843405	8843605	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355382, intron 18 of 36)	intron (NM_001355382, intron 18 of 36)	92181.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-11608428-1	chr19	11608328	11608528	+	603.0	f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	-3624.0	NM_026835	68774.0	Mm.290390	NM_026835	ENSMUSG00000024679	Ms4a6d	1110058E16Rik|AI447446|Ms4a11	membrane-spanning 4-domains, subfamily A, member 6D	protein-coding	-0.406933380668079	0.0873715106635828	-0.225898870161093	-0.401962158418971	-0.406194923612884	-0.394178562793032	-0.398100228292365	0.125809016079364	-0.216454357092841	0.932382111932225	1
Merged-chr8-106210076-3	chr8	106210002	106210202	+	699.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145404)	promoter-TSS (NM_145404)	831.0	NM_001007567	66432.0	Mm.269029	NM_001007567	ENSMUSG00000033106	Slc7a6os	2010007L18Rik|2400002F02Rik	solute carrier family 7, member 6 opposite strand	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132010624-4	chr4	132010531	132010731	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183428, intron 1 of 20)	intron (NM_183428, intron 1 of 20)	38447.0	NM_001128606	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-53160375-4	chr18	53160279	53160479	+	872.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15913.0	NM_001357463	67804.0	Mm.252171	NM_026386	ENSMUSG00000034484	Snx2	0610030A03Rik	sorting nexin 2	protein-coding	3.46877952731932	3.59040733649598	4.75302271220455	2.76375307784003	2.74992124661271	2.49256053209095	3.00340783395574	3.01661981754953	-1.58417079849274	0.0142017943918795	0.139476749294401
Merged-chr15-31472989-4	chr15	31472868	31473068	+	947.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172606, intron 20 of 25)	PB1D7|SINE|Alu	-19279.0	NM_145852	252967.0	Mm.436668	NM_145852	ENSMUSG00000022236	Ropn1l	ASP|AV047578|Akapasp	ropporin 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-102360749-3	chr2	102360650	102360850	+	868.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020267, intron 2 of 4)	intron (NM_020267, intron 2 of 4)	40150.0	NM_020267	80985.0	Mm.315002	NM_020267	ENSMUSG00000027189	Trim44	Dipb|Mc7	tripartite motif-containing 44	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-119785729-1	chr3	119785629	119785829	+	541.0	f1_c57bl6.idr	Intergenic	Intergenic	-2341.0	NM_019550	56195.0	Mm.29966	NM_019550	ENSMUSG00000028134	Ptbp2	Ptb2|brPTB|nPTB	polypyrimidine tract binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-95200645-4	chr4	95200541	95200741	+	852.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-148419.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6076583-2	chr19	6076483	6076683	+	662.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081041, intron 1 of 9)	intron (NM_001081041, intron 1 of 9)	604.0	NM_001081041	68505.0	Mm.227361	NM_001081041	ENSMUSG00000024799	Vps51	1110014N23Rik|3110057M17Rik|AI837850|Ffr	VPS51 GARP complex subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-54802428-4	chr11	54802315	54802515	+	984.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14712.0	NM_178626	72729.0	Mm.29476	NM_178626	ENSMUSG00000052298	Cdc42se2	2810404F18Rik|AA408783|AA536669|SPEC2	CDC42 small effector 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-87509280-4	chr6	87509189	87509389	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037727, intron 1 of 10)	L1M4c|LINE|L1	-12962.0	NM_175476	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	3.74333381722205	3.46764147339943	2.00169262466818	3.63988655789703	4.04692849611527	3.96192324547174	2.46298821373426	3.72300905339192	0.461278186616842	0.477564972459902	0.927980290875356
Merged-chr15-75088245-2	chr15	75088148	75088348	+	655.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	23689.0	NM_001357693	100041546.0	Mm.482110	NM_001099217	ENSMUSG00000022584	Ly6c2	Ly-6C.2|Ly-6C2	lymphocyte antigen 6 complex, locus C2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-11599126-2	chr2	11599026	11599226	+	758.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_152824, intron 2 of 11)	B1_Mus2|SINE|Alu	4073.0	NM_152824	76938.0	Mm.182769	NM_152824	ENSMUSG00000037197	Rbm17	2700027J02Rik	RNA binding motif protein 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-77065066-4	chr18	77064985	77065185	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164167)	promoter-TSS (NM_001164167)	-123.0	NM_008602	17344.0	Mm.6370	NM_008602	ENSMUSG00000025423	Pias2	6330408K17Rik|AI462206|ARIP3|AU018068|Dib|Miz1|PIASxalpha|PIASxb|PIASxbeta|SIZ2	protein inhibitor of activated STAT 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-84183545-4	chr15	84183441	84183641	+	955.866699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054088, intron 7 of 7)	intron (NM_054088, intron 7 of 7)	-8692.0	NM_178614	68653.0	Mm.290725	NM_178614	ENSMUSG00000022437	Samm50	1110030L07Rik	SAMM50 sorting and assembly machinery component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-51325017-2	chr13	51324917	51325117	+	612.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-83601.0	NM_010101	13610.0	Mm.136736	NM_010101	ENSMUSG00000067586	S1pr3	AI132464|Edg3|Lpb3|S1p3	sphingosine-1-phosphate receptor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84737819-4	chr8	84737735	84737935	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081982, intron 2 of 9)	intron (NM_001081982, intron 2 of 9)	36378.0	NM_008535	17095.0	Mm.4925	NM_008535	ENSMUSG00000034041	Lyl1	Lyl-1|bHLHa18	lymphoblastomic leukemia 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-45768018-3	chr17	45767960	45768160	+	715.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152153, intron 2 of 4)	intron (NR_152153, intron 2 of 4)	33554.0	NR_152153	433111.0	Mm.213441	NR_152153	ENSMUSG00000097727	F630040K05Rik	-	RIKEN cDNA F630040K05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-73342354-2	chr12	73342260	73342460	+	615.75	f0_balb.idr|f1_c57bl6.idr	intron (NM_001037717, intron 10 of 15)	intron (NM_001037717, intron 10 of 15)	55512.0	NM_001037717	625098.0	Mm.32075	NM_001037717	ENSMUSG00000044712	Slc38a6	AW322671|EG625098	solute carrier family 38, member 6	protein-coding	1.89916618525759	0.804789000547992	1.63248075846122	1.57725480334172	0.753263109745646	0.808672914638943	0.791175045417443	1.95940936973401	-1.03710087555106	0.487019765882129	0.93273329004796
Merged-chr12-86793590-2	chr12	86793490	86793690	+	776.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	59221.0	NM_001195767	627607.0	Mm.341880	NM_001195767	ENSMUSG00000059114	Lrrc74a	EG627607|Gm6772|Lrrc74	leucine rich repeat containing 74A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-29781494-2	chr5	29781394	29781594	+	610.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037940, intron 9 of 9)	intron (NM_001037940, intron 9 of 9)	-45558.0	NR_028426	332993.0	Mm.473746	NR_028426		Gm5129	EG332993	predicted gene 5129	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-35935937-3	chr16	35935843	35936043	+	776.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013371, intron 2 of 4)	RMER20C_Mm|LTR|ERVK	-2527.0	NM_030253	80285.0	Mm.49074	NM_030253	ENSMUSG00000022906	Parp9	ARTD9|AW214463|BC003281|Bagl|Bal|PARP-9	poly (ADP-ribose) polymerase family, member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16842841-4	chr7	16842755	16842955	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252458)	promoter-TSS (NM_001252458)	-47.0	NM_001252458	101540.0	Mm.1881	NM_178900	ENSMUSG00000041187	Prkd2	AI325941|PKD2	protein kinase D2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-67553051-2	chr5	67552951	67553151	+	648.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-54832.0	NM_001033415	330096.0	Mm.442747	NM_001033415	ENSMUSG00000050010	Shisa3	D830007B15Rik	shisa family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80926247-2	chr10	80926147	80926347	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3844.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94829983-2	chr10	94829883	94830083	+	648.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_018797, intron 20 of 30)	intron (NM_018797, intron 20 of 30)	114595.0	NM_018797	54712.0	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-109760746-2	chr4	109760646	109760846	+	856.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007983, intron 7 of 18)	intron (NM_007983, intron 7 of 18)	84119.0	NM_007983	14084.0	Mm.318259	NM_007983	ENSMUSG00000010517	Faf1	AA408698|Dffrx|Fam	Fas-associated factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80706143-2	chr10	80706043	80706243	+	579.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_007460)	TTS (NM_007460)	3450.0	NM_027829	71564.0	Mm.35802	NM_027829	ENSMUSG00000055862	Izumo4	9030607L17Rik|AI550407	IZUMO family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117292380-2	chr8	117292280	117292480	+	968.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	35361.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-32536892-3	chr11	32536799	32536999	+	655.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 1 of 18)	intron (NM_009288, intron 1 of 18)	3633.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-110884032-1	chr9	110883932	110884132	+	609.0	f1_c57bl6.idr	non-coding (NR_153354, exon 3 of 26)	non-coding (NR_153354, exon 3 of 26)	3710.0	NM_001146060	235633.0	Mm.86338	NM_146228	ENSMUSG00000044037	Als2cl	79H19D|79H19E|BC022645|D930044G19Rik|mRn.49018	ALS2 C-terminal like	protein-coding	0.538343631653026	1.34919783702647	0.247963466053607	0.72587910685561	0.231302738377845	0.258721351052634	0.628363893301315	0.242309973170722	-2.70090133759327	0.157160523123191	1
Merged-chr5-140705855-2	chr5	140705755	140705955	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001276287, intron 1 of 13)	intron (NM_001276287, intron 1 of 13)	789.0	NM_001276287	231841.0	Mm.271932	NM_172724	ENSMUSG00000000148	Brat1	AA881470|Baat1	BRCA1-associated ATM activator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-121249858-4	chr5	121249745	121249945	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181421, intron 1 of 75)	intron (NM_181421, intron 1 of 75)	29626.0	NM_181421	269700.0	Mm.184589	NM_181421	ENSMUSG00000042744	Hectd4	A130010L24|AU042671|BC019639|EG545802|Gm15800|mKIAA0614	HECT domain E3 ubiquitin protein ligase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-48972097-2	chr13	48971997	48972197	+	592.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3985.0	NR_015601	68128.0	Mm.426304	NR_015601		Fam120aos	C030044B11Rik	family with sequence similarity 120A, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-142396760-4	chr7	142396681	142396881	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8911.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	4.39525235016882	4.11241107937368	2.64256189051159	3.98501274653067	3.71090001429661	3.20928996260682	4.01069829653226	1.95952067501247	-0.731325226521491	0.256364967476244	0.755186141447443
Merged-chr6-87531198-3	chr6	87531121	87531321	+	720.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037727, intron 1 of 10)	MER5A|DNA|hAT-Charlie	2038.0	NM_001037727	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-50092989-4	chr16	50092899	50093099	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20147.0	NR_045935	224180.0	Mm.146439	NM_175010		Gm4827	B130050K08|EG224180	predicted gene 4827	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81542036-3	chr10	81541932	81542132	+	976.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010301, intron 1 of 6)	intron (NM_010301, intron 1 of 6)	3014.0	NM_010301	14672.0	Mm.260925	NM_010301	ENSMUSG00000034781	Gna11	Dsk7|E430025L19	guanine nucleotide binding protein, alpha 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-82040203-2	chr11	82040103	82040303	+	556.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT2B3|LTR|ERVL	4626.0	NM_011333	20296.0	Mm.290320	NM_011333	ENSMUSG00000035385	Ccl2	AI323594|HC11|JE|MCAF|MCP-1|MCP1|SMC-CF|Scya2|Sigje	chemokine (C-C motif) ligand 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-122826914-2	chr4	122826814	122827014	+	775.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C|LTR|ERVK	-9313.0	NM_008917	19063.0	Mm.277719	NM_008917	ENSMUSG00000028657	Ppt1	9530043G02Rik|AA960502|C77813|CLN1|D4Ertd184e|INCL|PPT	palmitoyl-protein thioesterase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-100509443-4	chr5	100509340	100509540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8801.0	NM_001359914	231506.0	Mm.212568	NM_172714	ENSMUSG00000035310	Lin54	AI461788	lin-54 homolog (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-72321495-3	chr8	72321401	72321601	+	860.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008452, exon 3 of 3)	3' UTR (NM_008452, exon 3 of 3)	2439.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	1.63439427983625	1.3504558074396	0.947491382678342	1.41048698985726	1.64871505858746	1.51160512544829	1.15130744385685	1.5362268518714	0.423258783302242	0.727873712588452	0.998431161219273
Merged-chr5-90332153-3	chr5	90332047	90332247	+	757.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198010, intron 1 of 32)	B3|SINE|B2	34038.0	NM_030886	81702.0	Mm.245522	NM_030886	ENSMUSG00000055204	Ankrd17	4933425K22Rik|A130069E23Rik|A930008M01|AA407558|AA516750|AU040470|Foe|Gtar|Mask|mKIAA0697	ankyrin repeat domain 17	protein-coding	0.23994212159959	-0.137919446073949	-0.143424688870085	-0.147685437486143	0.133307982182179	0.727149903254828	-0.142208822091027	-0.146940237105605	1.82889469572492	0.429548295282532	1
Merged-chr10-60407934-2	chr10	60407834	60408034	+	988.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252635, intron 26 of 68)	intron (NM_001252635, intron 26 of 68)	8208.0	NM_001164374	100302688.0	Mm.444135	NM_001164374	ENSMUSG00000090439	Gm17455	-	predicted gene, 17455	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-77275282-4	chr2	77275180	77275380	+	969.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175465, intron 1 of 17)	intron (NM_175465, intron 1 of 17)	5312.0	NM_175465	228071.0	Mm.27120	NM_175465	ENSMUSG00000042272	Sestd1	1500031J16Rik|A930010O20|Solo/Trio8	SEC14 and spectrin domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-75571156-3	chr7	75571050	75571250	+	688.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 3 of 36)	intron (NM_029332, intron 3 of 36)	115616.0	NM_029332	75547.0	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64364611-2	chr5	64364511	64364711	+	665.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	103331.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-75699997-4	chr7	75699871	75700071	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 16 of 36)	intron (NM_029332, intron 16 of 36)	-148367.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-86792400-1	chr6	86792300	86792500	+	553.0	f1_balb.idr	intron (NM_013471, intron 1 of 12)	intron (NM_013471, intron 1 of 12)	1184.0	NM_013471	11746.0	Mm.259702	NM_013471	ENSMUSG00000029994	Anxa4	AI265406|AIV|AW106930|Anx4|Xanx-4	annexin A4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-71224514-4	chr6	71224423	71224623	+	949.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160127, intron 6 of 9)	intron (NM_001160127, intron 6 of 9)	24644.0	NM_017399	14080.0	Mm.22126	NM_017399	ENSMUSG00000054422	Fabp1	Fabpl|L-FABP	fatty acid binding protein 1, liver	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-88439872-4	chr4	88439783	88439983	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025760)	promoter-TSS (NM_025760)	-957.0	NM_025760	66775.0	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	4.41420421127414	4.89697629257151	3.38445641813343	4.74539128632189	4.52487408585938	4.96892279466541	3.0214628344052	4.43387569126751	-0.0881149968670215	0.859255907934404	0.998431161219273
Merged-chr12-105722864-4	chr12	105722812	105723012	+	854.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030187, intron 4 of 17)	intron (NM_030187, intron 4 of 17)	16930.0	NM_030187	78801.0	Mm.36006	NM_030187	ENSMUSG00000041323	Ak7	4930502N02Rik|AK 7	adenylate kinase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-54126429-2	chr6	54126323	54126523	+	638.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163640, intron 1 of 12)	intron (NM_001163640, intron 1 of 12)	86491.0	NM_001163640	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	0.810792919681897	0.754999502350742	0.527804996045227	0.998008864701292	1.32065108241979	1.45164473603464	0.530105872658312	0.521125741316715	1.19683445356947	0.459364087638873	0.920253375164647
Merged-chr17-35814982-4	chr17	35814764	35814964	+	894.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6849.0	NM_133662	15937.0	Mm.25613	NM_133662	ENSMUSG00000003541	Ier3	AI663993|IEX-1|cI-3|gly96	immediate early response 3	protein-coding	0.920553626022651	0.419955621829682	0.410568014940827	1.36020855725202	0.700634836457842	1.10612995579508	0.412647461764486	0.404535242677183	-0.760780274757317	0.669824891197842	1
Merged-chr9-57589963-4	chr9	57589844	57590044	+	926.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027895, intron 1 of 15)	intron (NM_027895, intron 1 of 15)	492.0	NM_027895	71742.0	Mm.155877	NM_027895	ENSMUSG00000032308	Ulk3	1200015E14Rik	unc-51-like kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-39635845-4	chr18	39635695	39635895	+	964.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-137702.0	NM_011033	18459.0	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80832412-4	chr7	80832313	80832513	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR19-int|LTR|ERVK	-29082.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69667920-2	chr11	69667820	69668020	+	968.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159375, intron 9 of 10)	intron (NM_001159375, intron 9 of 10)	-1750.0	NR_110993	12514.0	Mm.15819	NM_009853	ENSMUSG00000018774	Cd68	Lamp4|Scard1|gp110	CD68 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-84206878-2	chr12	84206778	84206978	+	819.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163501, intron 1 of 12)	L2|LINE|L2	12003.0	NM_001163501	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-116307536-4	chr7	116307432	116307632	+	932.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305185, intron 3 of 26)	CpG	844.0	NM_001305185	233765.0	Mm.3741	NM_172743	ENSMUSG00000045659	Plekha7	A430081P20Rik|AI414265	pleckstrin homology domain containing, family A member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4420517-4	chr16	4420415	4420615	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291910)	promoter-TSS (NM_001291910)	-17.0	NM_009624	11515.0	Mm.439750	NM_009624	ENSMUSG00000005580	Adcy9	AC9|ACtp10|AW125421|D16Wsu65e|mKIAA0520	adenylate cyclase 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4963515-2	chr16	4963415	4963615	+	983.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271586)	promoter-TSS (NM_001271586)	722.0	NM_028301	72615.0	Mm.290628	NM_028301	ENSMUSG00000022515	Anks3	2700067D09Rik|C81345|mKIAA1977	ankyrin repeat and sterile alpha motif domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-40890417-3	chr8	40890303	40890503	+	840.611145	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007514, intron 1 of 11)	MLT1B|LTR|ERVL-MaLR	28036.0	NM_001044740	11988.0	Mm.4676	NM_007514	ENSMUSG00000031596	Slc7a2	20.5|AI158848|Atrc2|CAT-2|Cat2|Tea	solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	protein-coding	2.32130133863336	3.19517132180003	1.30558428478439	3.29977584234256	1.1928744300637	1.05068658925145	1.3180639526212	1.2685973880293	-4.01936985203785	0.000643189643526667	0.0137476057179922
Merged-chr4-56134562-4	chr4	56134478	56134678	+	899.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-602103.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-4505896-2	chr7	4505796	4505996	+	651.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360154, intron 12 of 12)	GA-rich|Low_complexity|Low_complexity	-4216.0	NM_029834	232807.0	Mm.360391	NM_029834	ENSMUSG00000019254	Ppp1r12c	2410197A17Rik|AI839747|B430101M08|Mbs85	protein phosphatase 1, regulatory (inhibitor) subunit 12C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-20895726-2	chr9	20895626	20895826	+	548.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016876, intron 7 of 10)	intron (NM_016876, intron 7 of 10)	2864.0	NM_016876	53356.0	Mm.427309	NM_016876	ENSMUSG00000070319	Eif3g	44kDa|D0Jmb4|Eif3s4|TU-189B2|eIF3-p44|p44	eukaryotic translation initiation factor 3, subunit G	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-161517560-4	chr1	161517431	161517631	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22874.0	NM_183391	240873.0	Mm.276823	NM_183391	ENSMUSG00000066755	Tnfsf18	Gitrl|Tnlg2a	tumor necrosis factor (ligand) superfamily, member 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-8997235-4	chr5	8997127	8997327	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023733)	promoter-TSS (NM_023733)	-81.0	NM_023733	74114.0	Mm.28197	NM_023733	ENSMUSG00000003623	Crot	1200003H03Rik	carnitine O-octanoyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120685348-3	chr8	120685250	120685450	+	884.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17030.0	NM_001293559	12857.0	Mm.386758	NM_009941	ENSMUSG00000031818	Cox4i1	AL024441|COX|COX IV-1|COXIV|Cox4|Cox4a|IV-1	cytochrome c oxidase subunit 4I1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-106972299-2	chr14	106972199	106972399	+	707.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-485779.0	NR_045938	73631.0	Mm.48862	NR_045938	ENSMUSG00000099794	1700128A07Rik	-	RIKEN cDNA 1700128A07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35048560-4	chr17	35048443	35048643	+	969.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1700.0	NM_033444	114584.0	Mm.29524	NM_033444	ENSMUSG00000007041	Clic1	Clcp|G6	chloride intracellular channel 1	protein-coding	0.888726874215706	2.27334080066036	1.19825839367295	2.28176008183937	2.3081388972319	0.973011028853468	1.74786791954988	0.926570430108418	-0.473700488605073	0.718482962605316	0.998431161219273
Merged-chr1-128811061-1	chr1	128810961	128811161	+	794.0	f0_balb.idr	Intergenic	B4A|SINE|B4	-218762.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-114584006-3	chr9	114583917	114584117	+	662.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19648.0	NM_001042503	636931.0	Mm.17857	NM_001042503	ENSMUSG00000079259	Trim71	2610206G21Rik|AL022943|Gm1127|Lin41|lin-41|mLin41|mlin-41	tripartite motif-containing 71	protein-coding	-0.292095608361879	-0.278812309812278	0.379310888601305	-0.286527901942756	0.18443602083629	-0.277829301656532	-0.282209178934602	-0.121016570789666	-0.273634314220571	0.911260664346375	1
Merged-chr13-30764517-4	chr13	30764405	30764605	+	766.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_013674, exon 9 of 9)	3' UTR (NM_013674, exon 9 of 9)	15272.0	NM_013674	16364.0	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-88284182-6	chr1	88284116	88284316	+	807.273804	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6637.0	NM_198652	381280.0	Mm.384762	NM_198652	ENSMUSG00000044783	Hjurp	6430706D22Rik|A730008H23Rik|C330011F01Rik|Gm975|Mfleg1	Holliday junction recognition protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-98708162-4	chr15	98708073	98708273	+	941.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153518)	promoter-TSS (NM_153518)	-54.0	NM_153518	105833.0	Mm.26205	NM_153518	ENSMUSG00000003354	Ccdc65	4933417K04Rik|AI428139|AU020178|NYD-SP28	coiled-coil domain containing 65	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53439111-4	chr4	53439019	53439219	+	954.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1294.0	NM_001159633	100434.0	Mm.482207	NM_133891	ENSMUSG00000028412	Slc44a1	2210409B22Rik|4833416H08Rik|AW547365|CHTL1|CTL1|Cdw92	solute carrier family 44, member 1	protein-coding	1.70634537965719	1.38654882237768	0.919301113804411	1.9942306107119	2.11181013926713	1.7161534431832	0.923553080294908	0.906868825635902	-0.0864171695021754	0.948639256116466	0.998431161219273
Merged-chr14-31137925-2	chr14	31137825	31138025	+	791.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027289, intron 9 of 12)	intron (NM_027289, intron 9 of 12)	3072.0	NM_027289	70021.0	Mm.261681	NM_027289	ENSMUSG00000071547	Nt5dc2	2510015F01Rik	5'-nucleotidase domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-40746291-2	chr18	40746191	40746391	+	822.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	487930.0	NM_026135	383348.0	Mm.76366	NM_026135	ENSMUSG00000051401	Kctd16	4930434H12Rik|Gm1267	potassium channel tetramerisation domain containing 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-64002129-4	chr15	64002027	64002227	+	970.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144846, intron 1 of 11)	intron (NM_144846, intron 1 of 11)	-4061.0	NM_001360035	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117910629-4	chr10	117910528	117910728	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER44B|DNA|TcMar-Tigger	-14831.0	NR_045342	71067.0	Mm.410793	NR_045342	ENSMUSG00000112500	4933411E08Rik	-	RIKEN cDNA 4933411E08 gene	ncRNA	5.94899364075429	5.683957210192	5.40295716641062	4.70818317096573	5.85690963732653	5.97807253107685	5.64061692726509	6.18744232551951	0.469031684501603	0.109823685360198	0.519238250059898
Merged-chr6-29502775-2	chr6	29502675	29502875	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001029985, intron 5 of 37)	intron (NM_001029985, intron 5 of 37)	5177.0	NM_001029985	333088.0	Mm.332961	NM_001029985	ENSMUSG00000059022	Kcp	AW060220|CRIM-2|Crim2|Gm793|KCP-1	kielin/chordin-like protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-92460606-3	chr2	92460515	92460715	+	773.476196	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145832)	promoter-TSS (NM_145832)	-97.0	NM_145832	228368.0	Mm.273990	NM_145832	ENSMUSG00000049922	Slc35c1	E430007K15Rik|fuct1	solute carrier family 35, member C1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-161033957-3	chr1	161033825	161034025	+	769.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_153814)	promoter-TSS (NR_153814)	924.0	NM_001356489	240869.0	Mm.296127	NM_173424	ENSMUSG00000043467	Zbtb37	D430004I08Rik	zinc finger and BTB domain containing 37	protein-coding	0.590667284698998	0.666365095324412	0.642794824677499	0.623835153465545	2.33174874914746	2.1660922309956	0.648086960814901	1.9027707651597	5.45774569845452	0.00040113086575466	0.00936336211541714
Merged-chr10-81397888-2	chr10	81397788	81397988	+	771.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008688, exon 10 of 10)	3' UTR (NM_008688, exon 10 of 10)	4824.0	NM_001099917	72273.0	Mm.253147	NM_001099917	ENSMUSG00000078439	Smim24	2210404O07Rik	small integral membrane protein 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-44102502-4	chr1	44102414	44102614	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029368)	promoter-TSS (NM_029368)	-73.0	NM_001356297	75623.0	Mm.348017	NM_029368	ENSMUSG00000026049	Tex30	1700029F09Rik|3110030D08Rik	testis expressed 30	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-95897814-2	chr11	95897714	95897914	+	901.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008081, intron 1 of 10)	B3A|SINE|B2	17057.0	NM_008081	14422.0	Mm.340702	NM_008081	ENSMUSG00000013418	B4galnt2	AI593864|Dlb-1|Dlb1|Galg2|Galgt2|Ggm3|Igf2bp1	beta-1,4-N-acetyl-galactosaminyl transferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-27042473-4	chr14	27042373	27042573	+	968.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134437, intron 1 of 12)	intron (NM_134437, intron 1 of 12)	3472.0	NM_134437	171463.0	Mm.206726	NM_027265	ENSMUSG00000040717	Il17rd	2810004A10Rik|AI428510|Sef|Sef-S	interleukin 17 receptor D	protein-coding	-1.32440223303897	-1.29339468673833	-0.717877708899544	-1.31276353204239	-1.32392690786997	-1.29109028300231	-1.30162128075409	-1.31119997543009	-2.49510383040271	0.470258445164311	1
Merged-chr8-120796358-4	chr8	120796258	120796458	+	972.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57719.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-31994807-3	chr17	31994709	31994909	+	758.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028902, intron 6 of 7)	intron (NM_028902, intron 6 of 7)	39699.0	NM_028902	74377.0	Mm.75856	NM_028902	ENSMUSG00000002076	Hsf2bp	4932437G14Rik	heat shock transcription factor 2 binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-76612815-4	chr11	76612766	76612966	+	948.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35127.0	NM_198894	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	0.339049050589107	0.0821771463447069	0.941550245363488	0.0712690637190412	0.345940363946606	0.0835611183661913	0.419598891734992	0.0721010453337582	-1.21873770726348	0.548676004326244	1
Merged-chr5-139408698-4	chr5	139408600	139408800	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177000, intron 1 of 1)	intron (NM_177000, intron 1 of 1)	2313.0	NM_177000	319772.0	Mm.440271	NM_177000	ENSMUSG00000044092	C130050O18Rik	-	RIKEN cDNA C130050O18 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-86283907-3	chr17	86283811	86284011	+	920.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011104, intron 1 of 14)	intron (NM_011104, intron 1 of 14)	3267.0	NR_045435	72104.0	Mm.443401	NR_045435	ENSMUSG00000100738	2010106C02Rik	-	RIKEN cDNA 2010106C02 gene	ncRNA	1.04849924932686	2.19284459607867	2.55538437319797	1.8130413101026	1.73088597751648	1.13584838683267	1.56365797391557	2.25494436790349	-0.736842803500664	0.51688898971473	0.947641799425091
Merged-chr15-12374441-2	chr15	12374341	12374541	+	613.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081064, exon 19 of 24)	exon (NM_001081064, exon 19 of 24)	52945.0	NM_025673	66629.0	Mm.157655	NM_025673	ENSMUSG00000022200	Golph3	4733401N08Rik|5730410D03Rik|AW413496	golgi phosphoprotein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-44781610-2	chr17	44781510	44781710	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178652, intron 1 of 11)	MTEa-int|LTR|ERVL-MaLR	4444.0	NM_178652	109115.0	Mm.431327	NM_178652	ENSMUSG00000038954	Supt3	2310066G22Rik|AI315192|SPT3|SPT3L|Supt3h	suppressor of Ty 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165985418-6	chr2	165985022	165985222	+	923.805542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-7515.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135495180-1	chr4	135495080	135495280	+	739.0	f0_balb.idr	promoter-TSS (NM_028995)	promoter-TSS (NM_028995)	-211.0	NM_001361484	74552.0	Mm.26548	NM_028995	ENSMUSG00000028803	Nipal3	9130020G22Rik|AI480660|Npal3	NIPA-like domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-192722381-2	chr1	192722281	192722481	+	848.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_144881, intron 6 of 11)	intron (NM_144881, intron 6 of 11)	48838.0	NM_144881	226861.0	Mm.145857	NM_144881	ENSMUSG00000037375	Hhat	2810432O22Rik|AI462858|AP-2CRE|Skn|Tg(TFAP2A-cre)1Will	hedgehog acyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-181022389-3	chr1	181022274	181022474	+	773.233337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4805.0	NM_010145	13849.0	Mm.9075	NM_010145	ENSMUSG00000038776	Ephx1	EH|Eph-1|Eph1|Epxh1|mEH	epoxide hydrolase 1, microsomal	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118606639-4	chr9	118606526	118606726	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133721)	promoter-TSS (NM_133721)	-83.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141072153-2	chr7	141072053	141072253	+	953.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_177897)	TTS (NM_177897)	-6076.0	NM_001162924	56460.0	Mm.350037	NM_019762	ENSMUSG00000054065	Pkp3	2310056L12Rik	plakophilin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-45410903-3	chr18	45410822	45411022	+	763.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001312905, intron 2 of 10)	ORR1B1|LTR|ERVL-MaLR	142062.0	NM_001312905	140492.0	Mm.411614	NM_080465	ENSMUSG00000054477	Kcnn2	KCa2.2|SK2|SKCA2|bc|fri	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-39369676-4	chr10	39369562	39369762	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001122892)	promoter-TSS (NM_001122892)	-137.0	NM_001122892	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-31055693-2	chr6	31055593	31055793	+	893.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7054.0	NR_029744	387222.0		NR_029744	ENSMUSG00000065610	Mir29a	Mirn29a|mir-29a|mmu-mir-29a	microRNA 29a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-61561588-4	chr8	61561487	61561687	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293772, intron 10 of 21)	intron (NM_001293772, intron 10 of 21)	29582.0	NM_001293774	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-40500617-4	chr3	40500498	40500698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	22314.0	NR_040445	100040882.0	Mm.272869	NR_040445	ENSMUSG00000037884	1700017G19Rik	-	RIKEN cDNA 1700017G19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-20795563-2	chr13	20795480	20795680	+	702.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_012054, intron 1 of 20)	MTC|LTR|ERVL-MaLR	1467.0	NM_012054	27052.0	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	2.34315171120149	1.75684358844559	2.25934291009566	1.23840227344698	2.57409305669085	1.55621553192955	2.03184319248118	2.39968959703501	0.551389820031763	0.58280304580918	0.966599221005409
Merged-chr15-103318750-2	chr15	103318650	103318850	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356627, intron 3 of 7)	intron (NM_001356627, intron 3 of 7)	-8312.0	NM_030720	80910.0	Mm.160369	NM_030720	ENSMUSG00000063234	Gpr84	EX33	G protein-coupled receptor 84	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-95325315-6	chr13	95325211	95325411	+	936.7222289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_028106, exon 1 of 2)	5' UTR (NM_028106, exon 1 of 2)	486.0	NM_028106	72114.0	Mm.3774	NM_028106	ENSMUSG00000041995	Zbed3	0610037K01Rik|2610005H11Rik|AU018975|AU024588	zinc finger, BED type containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-38204869-4	chr13	38204770	38204970	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026382)	promoter-TSS (NM_026382)	-69.0	NM_026382	67797.0	Mm.250783	NM_026382	ENSMUSG00000021431	Snrnp48	1110050F08Rik|6530403A03Rik|C6orf151	small nuclear ribonucleoprotein 48 (U11/U12)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-50539958-4	chr2	50539855	50540055	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	184930.0	NR_154590	102634280.0		NR_154590		Gm48908	-	predicted gene 48908	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69754849-4	chr11	69754761	69754961	+	905.974976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291068, intron 1 of 28)	MER119|DNA|hAT-Charlie	3772.0	NM_001291068	20020.0	Mm.16533	NM_009089	ENSMUSG00000005198	Polr2a	220kDa|Rpb1|Rpo2-1	polymerase (RNA) II (DNA directed) polypeptide A	protein-coding	-1.56355737717652	-1.81244775989375	-1.82128546162293	-1.82854501295842	-1.83962066705452	-1.81053259306168	-1.81928479966835	-1.82724555674025	-1.28500227969968	0.715751224811686	1
Merged-chr4-16162253-5	chr4	16162145	16162345	+	930.06665	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_138102, intron 1 of 11)	intron (NR_138102, intron 1 of 11)	1398.0	NM_138952	192656.0	Mm.112765	NM_138952	ENSMUSG00000041135	Ripk2	2210420D18Rik|CARD3|CARDIAK|CCK|D4Bwg0615e|RICK|RIP2	receptor (TNFRSF)-interacting serine-threonine kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-16456338-4	chr19	16456239	16456439	+	907.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008137, intron 1 of 6)	intron (NM_008137, intron 1 of 6)	20672.0	NM_008137	14675.0	Mm.313181	NM_008137	ENSMUSG00000024697	Gna14	AU023208	guanine nucleotide binding protein, alpha 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-18514383-3	chr12	18514278	18514478	+	649.638916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033157)	promoter-TSS (NM_001033157)	-132.0	NM_001033157	236366.0	Mm.352227	NM_001033157	ENSMUSG00000073197	5730507C01Rik	-	RIKEN cDNA 5730507C01 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-92058775-2	chr17	92058675	92058875	+	819.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-965973.0	NM_020252	18189.0	Mm.478418	NM_020252	ENSMUSG00000024109	Nrxn1	1700062G21Rik|9330127H16Rik|A230068P09Rik|mKIAA0578	neurexin I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-11502115-4	chr2	11502050	11502250	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177752)	promoter-TSS (NM_001177752)	-60.0	NM_001177757	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-127165797-2	chr6	127165697	127165897	+	697.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_040275, intron 1 of 1)	intron (NR_040275, intron 1 of 1)	-14749.0	NM_009829	12444.0	Mm.333406	NM_009829	ENSMUSG00000000184	Ccnd2	2600016F06Rik|AI256817|BF642806|C86853|Vin-1|Vin1|cD2	cyclin D2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-21564050-4	chr11	21563937	21564137	+	993.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316675, intron 4 of 8)	intron (NM_001316675, intron 4 of 8)	7897.0	NM_008618	17449.0	Mm.212703	NM_008618	ENSMUSG00000020321	Mdh1	B230377B03Rik|D17921|MDH-s|MDHA|Mor-2|Mor2	malate dehydrogenase 1, NAD (soluble)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83440467-4	chr11	83440365	83440565	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_172797)	TTS (NM_172797)	2771.0	NM_025492	66330.0	Mm.44800	NM_025492	ENSMUSG00000035085	1700020L24Rik	-	RIKEN cDNA 1700020L24 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-52297581-2	chr2	52297481	52297681	+	971.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010889, intron 27 of 156)	intron (NM_010889, intron 27 of 156)	6579.0	NR_040620	78049.0	Mm.243883	NR_040620		4930573O16Rik	-	RIKEN cDNA 4930573O16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-140845133-4	chr7	140845062	140845262	+	886.8273929999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001099742)	promoter-TSS (NM_001099742)	-403.0	NM_001099742	338417.0	Mm.270960	NM_001099742	ENSMUSG00000038801	Scgb1c1	Ryd5	secretoglobin, family 1C, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70651953-2	chr8	70651853	70652053	+	765.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023217, intron 3 of 4)	intron (NM_023217, intron 3 of 4)	7785.0	NM_023217	66522.0	Mm.154906	NM_023217	ENSMUSG00000056204	Pgpep1	2810003H13Rik|Gm19458|PAP-I|PGP|PGP-I|PGPI|Pcp	pyroglutamyl-peptidase I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-132302657-2	chr7	132302557	132302757	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029935, intron 1 of 7)	intron (NM_029935, intron 1 of 7)	-13007.0	NR_028578	100043682.0	Mm.482794	NR_028578	ENSMUSG00000109270	Gm10584	-	predicted gene 10584	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167703086-2	chr2	167702986	167703186	+	621.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11909.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30609445-2	chr2	30609345	30609545	+	672.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_030137)	TTS (NM_030137)	14401.0	NM_030137	78617.0	Mm.40413	NM_030137	ENSMUSG00000047363	Cstad	9530039B02Rik	CSA-conditional, T cell activation-dependent protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-97578298-2	chr15	97578198	97578398	+	867.099976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	127524.0	NM_028003	71919.0	Mm.12255	NM_028003	ENSMUSG00000022466	Rpap3	2310042P20Rik|D15Ertd682e	RNA polymerase II associated protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-104054858-2	chr14	104054758	104054958	+	654.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27716.0	NR_045953	73877.0	Mm.399172	NR_045953	ENSMUSG00000115727	4930432J09Rik	-	RIKEN cDNA 4930432J09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-95417326-1	chr4	95417226	95417426	+	758.0	f0_c57.idr	Intergenic	Intergenic	-140181.0	NM_001113412	75578.0	Mm.276098	NM_029347	ENSMUSG00000028573	Fggy	2310009E04Rik	FGGY carbohydrate kinase domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128343738-3	chr10	128343634	128343834	+	766.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026444, intron 1 of 10)	intron (NM_026444, intron 1 of 10)	6007.0	NM_026444	12974.0	Mm.58836	NM_026444	ENSMUSG00000005683	Cs	2610511A05Rik|9030605P22Rik|Ahl4|BB234005|Cis	citrate synthase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-53747766-1	chr18	53747666	53747866	+	752.0	f1_balb.idr	Intergenic	Lx8|LINE|L1	-3219.0	NM_178686	225523.0	Mm.193678	NM_178686	ENSMUSG00000048799	Cep120	A230075C01|AU016693|Ccdc100	centrosomal protein 120	protein-coding	0.342398720135378	0.451236473030394	0.0755053335913819	0.0705893444467789	0.349386001812011	0.943084141277583	0.076907825509061	0.0714492924943969	1.17071580351345	0.563096422563353	1
Merged-chr17-75006222-2	chr17	75006122	75006322	+	556.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_019919, exon 1 of 34)	exon (NM_019919, exon 1 of 34)	693.0	NM_019919	268977.0	Mm.269747	NM_019919	ENSMUSG00000001870	Ltbp1	9430031G15Rik|9830146M04|Ltbp-1|Ltbp1L|TGF-beta1-BP-1|Tgfb|b2b1000Clo	latent transforming growth factor beta binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-64809951-4	chr14	64809860	64810060	+	830.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	139897.0	NM_177338	219150.0	Mm.344074	NM_177338	ENSMUSG00000021972	Hmbox1	AI451877|AI604847|F830020C16Rik	homeobox containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-119238086-3	chr12	119237979	119238179	+	780.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_177290, exon 1 of 14)	5' UTR (NM_177290, exon 1 of 14)	197.0	NM_177290	320910.0	Mm.217000	NM_177290	ENSMUSG00000025321	Itgb8	4832412O06Rik	integrin beta 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-101840596-3	chr5	101840484	101840684	+	954.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 66 of 66)	L1M2|LINE|L1	75454.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-95945606-4	chr16	95945510	95945710	+	994.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16533.0	NR_040484	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-32809908-3	chr17	32809780	32809980	+	736.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001267583)	promoter-TSS (NM_001267583)	51.0	NM_001267583	240063.0	Mm.30675	NM_183177	ENSMUSG00000055202	Zfp811	BC052046	zinc finger protein 811	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-124079961-3	chr9	124079861	124080061	+	802.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22222.0	NM_009915	12772.0	Mm.6272	NM_009915	ENSMUSG00000049103	Ccr2	Cc-ckr-2|Ccr2a|Ccr2b|Ckr2|Ckr2a|Ckr2b|Cmkbr2|mJe-r	chemokine (C-C motif) receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-45307949-6	chr14	45307879	45308079	+	875.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015774, intron 1 of 15)	B1_Mur3|SINE|Alu	10593.0	NM_015774	50527.0	Mm.387108	NM_015774	ENSMUSG00000021831	Ero1l	ERO1-L|Ero1a	ERO1-like (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-65140598-2	chr6	65140498	65140698	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019455, intron 1 of 5)	Lx8|LINE|L1	4132.0	NM_019455	54486.0	Mm.410688	NM_019455	ENSMUSG00000029919	Hpgds	H-PGDS|Ptgds2	hematopoietic prostaglandin D synthase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-87440728-2	chr12	87440628	87440828	+	665.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001102565, intron 1 of 5)	B3|SINE|B2	-2971.0	NR_037228	100526546.0		NR_037228	ENSMUSG00000105428	Mir3068	mir-3068|mmu-mir-3068	microRNA 3068	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101546857-4	chr7	101546748	101546948	+	882.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	8954.0	NM_007490	11871.0	Mm.439746	NM_007490	ENSMUSG00000092517	Art2a-ps	ARTC2|Art2a|Ly92a|Rt-6|Rt6|Rt6-1	ADP-ribosyltransferase 2a, pseudogene	protein-coding	3.98624431169121	3.29041153954379	4.39230439065398	3.07639024855523	4.23814553985228	3.82050926470938	3.42069267158653	4.38830846687697	0.317623153643026	0.54260740481248	0.954948705692373
Merged-chr1-156532953-4	chr1	156532791	156532991	+	745.535706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-25896.0	NM_009595	11352.0	Mm.329515	NM_009595	ENSMUSG00000026596	Abl2	AA536808|Abll|Arg	v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)	protein-coding	2.71734771344862	0.979494914868183	1.93107645965564	0.926199247193567	1.33075735368271	1.71300486318916	2.69347971112162	0.930427435479433	-0.0395922417746254	0.975191927096266	0.998431161219273
Merged-chr17-66078505-2	chr17	66078405	66078605	+	680.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001278415)	TTS (NM_001278415)	-1459.0	NM_001025572	106585.0	Mm.34706	NM_001025572	ENSMUSG00000034647	Ankrd12	2900001A12Rik|AI447928|ANCO-2|AV347965|GAC-1|mKIAA0874	ankyrin repeat domain 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-107941107-2	chr14	107941007	107941207	+	548.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	973132.0	NM_199065	76965.0	Mm.257268	NM_199065	ENSMUSG00000075478	Slitrk1	3200001I04Rik	SLIT and NTRK-like family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-10523022-3	chr16	10522928	10523128	+	768.688904	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007575, intron 15 of 18)	B3|SINE|B2	20026.0	NM_021428	58239.0	Mm.353006	NM_021428	ENSMUSG00000038055	Dexi	1810029J14Rik|AI836170|AW413143|D16Bwg0586e|Myle	dexamethasone-induced transcript	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28450078-2	chr7	28449978	28450178	+	569.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-1907.0	NM_030562	80749.0	Mm.483073	NM_030562	ENSMUSG00000030600	Lrfn1	BC004018|SALM2|Semo1	leucine rich repeat and fibronectin type III domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-32209122-3	chr12	32209030	32209230	+	869.0	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	promoter-TSS (NM_001146201)	promoter-TSS (NM_001146201)	-481.0	NM_001146200	30955.0	Mm.101369	NM_020272	ENSMUSG00000020573	Pik3cg	5830428L06Rik|PI3Kgamma|p110gamma	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding	3.82074627381673	3.8198181099569	3.06035553275948	2.30239995975639	3.61602933584144	2.48274948006128	3.08481514990661	2.87970079162658	-0.488224686026675	0.465976220292395	0.922774431844435
Merged-chr4-89052032-3	chr4	89051952	89052152	+	721.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033533, intron 1 of 2)	intron (NR_033533, intron 1 of 2)	1745.0	NR_033533	100040617.0	Mm.171720	NR_033533	ENSMUSG00000085183	Wincr1	Gm12603	WNT induced non-coding RNA 1	ncRNA	-2.18138529563533	-2.15523716995652	-2.1631445789866	-2.16963996020037	-2.05513010215571	-2.15352360143315	-2.16135451490766	-2.16847729006863	0.759018020146679	0.829933115115583	1
Merged-chr4-48681147-4	chr4	48681055	48681255	+	846.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17641.0	NM_026509	68016.0	Mm.133444	NM_026509	ENSMUSG00000028348	Cavin4	2310039E09Rik|Murc	caveolae associated 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-43131132-1	chr5	43131032	43131232	+	541.0	f1_c57bl6.idr	Intergenic	Intergenic	-102331.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	0.286490502441276	-0.101487346936316	0.0441609188900744	0.253349279319126	-0.111195522934719	0.0665384376274672	0.0481857283280674	-0.107082865497876	-1.73440136698397	0.419307544915535	1
Merged-chr10-91244345-2	chr10	91244245	91244445	+	861.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23726.0	NR_151510	102633753.0	Mm.416936	NR_151510		4930534H03Rik	-	RIKEN cDNA 4930534H03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-58755292-4	chr15	58755188	58755388	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	68139.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-108650498-2	chr9	108650398	108650598	+	648.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357285, intron 1 of 15)	B3|SINE|B2	-1090.0	NM_001357286	23807.0	Mm.290447	NM_011790	ENSMUSG00000064145	Arih2	AI843547|ARI2|TRIAD1|UIP48	ariadne RBR E3 ubiquitin protein ligase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81412803-2	chr10	81412703	81412903	+	666.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_026756, intron 2 of 8)	intron (NM_026756, intron 2 of 8)	3228.0	NR_152732	102634174.0	Mm.392213	NR_152732	ENSMUSG00000085327	Gm16104	-	predicted gene 16104	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-122834553-4	chr6	122834418	122834618	+	685.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021899, intron 6 of 10)	ID4|SINE|ID	3141.0	NR_106090	102465710.0		NR_106090	ENSMUSG00000106580	Mir7231	mmu-mir-7231	microRNA 7231	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-49848583-4	chr11	49848479	49848679	+	956.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016961, intron 1 of 11)	intron (NM_016961, intron 1 of 11)	1828.0	NM_016961	26420.0	Mm.68933	NM_016961	ENSMUSG00000020366	Mapk9	AI851083|JNK2|Prkm9|p54aSAPK	mitogen-activated protein kinase 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-44961254-4	chr2	44961153	44961353	+	920.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61924.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-10007407-4	chr8	10007335	10007535	+	859.1749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033622, intron 2 of 6)	intron (NM_033622, intron 2 of 6)	802.0	NM_033622	24099.0	Mm.28835	NM_033622	ENSMUSG00000031497	Tnfsf13b	BAFF|BLyS|D8Ertd387e|TALL-1|TALL1|THANK|TNFSF20|Tnlg7a|zTNF4	tumor necrosis factor (ligand) superfamily, member 13b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-185294075-2	chr1	185293975	185294175	+	852.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198653, intron 18 of 22)	MTE-int|LTR|ERVL-MaLR	-19244.0	NR_029580	387189.0		NR_029580	ENSMUSG00000065581	Mir194-1	Mirn194|Mirn194-1|miR-194|mir-194-1	microRNA 194-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3436676-2	chr12	3436576	3436776	+	895.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001270988, intron 1 of 11)	L1VL4|LINE|L1	9819.0	NM_172421	75302.0	Mm.120475	NM_172421	ENSMUSG00000037486	Asxl2	4930556B16Rik|mKIAA1685	additional sex combs like 2, transcriptional regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-20976832-4	chr9	20976718	20976918	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010333)	promoter-TSS (NM_010333)	-25.0	NM_010333	14739.0	Mm.46493	NM_010333	ENSMUSG00000043895	S1pr2	1100001A16Rik|Edg5|Gpcr13|H218|LPb2|S1P2	sphingosine-1-phosphate receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-83721236-2	chr2	83721136	83721336	+	595.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3161.0	NM_008402	16410.0	Mm.227	NM_008402	ENSMUSG00000027087	Itgav	1110004F14Rik|2610028E01Rik|CD51|D430040G12Rik	integrin alpha V	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-69204010-4	chr17	69203911	69204111	+	887.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355736, intron 1 of 21)	intron (NM_001355736, intron 1 of 21)	44655.0	NM_001355735	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-142494570-2	chr3	142494470	142494670	+	556.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-2364.0	NM_153564	229898.0	Mm.459245	NM_153564	ENSMUSG00000105504	Gbp5	5330409J06Rik|Gbp5a	guanylate binding protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-77908250-2	chr9	77908150	77908350	+	629.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-9115.0	NM_134255	68801.0	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-92199629-4	chr6	92199521	92199721	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030081, intron 7 of 11)	intron (NM_030081, intron 7 of 11)	15190.0	NM_030081	78287.0	Mm.290734	NM_030081	ENSMUSG00000014550	Rbsn	5330426D11Rik|Zfyve20	rabenosyn, RAB effector	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-117360360-3	chr3	117360327	117360527	+	983.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_177664, exon 1 of 7)	5' UTR (NM_177664, exon 1 of 7)	449.0	NM_177664	229791.0	Mm.140138	NM_177664	ENSMUSG00000044667	Plppr4	A330086D10|D3Bwg0562e|Lppr4|PRG-1|mKIAA0455	phospholipid phosphatase related 4	protein-coding	1.93180130725554	1.1501475387799	1.126234405086	2.31246853646213	1.73158087272591	1.62072163861703	2.00736865376788	2.40229922773206	0.618492379088573	0.581944802921515	0.966599221005409
Merged-chr7-46606622-3	chr7	46606514	46606714	+	578.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013789, intron 8 of 10)	intron (NM_013789, intron 8 of 10)	33193.0	NM_013789	27414.0	Mm.76659	NM_013789	ENSMUSG00000030839	Sergef	DelGEF|Gef|Gnef|Gnefr	secretion regulating guanine nucleotide exchange factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-122509332-4	chr3	122509256	122509456	+	876.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013867, intron 5 of 11)	intron (NM_013867, intron 5 of 11)	25787.0	NM_001355264	29815.0	Mm.45815	NM_013867	ENSMUSG00000028121	Bcar3	AI131758|AND-34	breast cancer anti-estrogen resistance 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-47258759-3	chr4	47258656	47258856	+	920.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009928, exon 8 of 40)	exon (NM_009928, exon 8 of 40)	50744.0	NM_009928	12819.0	Mm.233547	NM_009928	ENSMUSG00000028339	Col15a1	-	collagen, type XV, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-114645949-2	chr6	114645849	114646049	+	579.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028835, intron 1 of 18)	ID_B1|SINE|B4	2852.0	NM_001253718	74244.0	Mm.275332	NM_028835	ENSMUSG00000030314	Atg7	1810013K23Rik|Agp7|Apg7l|Atg7l|Gm21553	autophagy related 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-34621087-2	chr6	34621007	34621207	+	633.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347100, intron 1 of 13)	HAL1|LINE|L1	22603.0	NM_001347100	109624.0	Mm.308134	NM_145575	ENSMUSG00000029761	Cald1	4833423D12Rik|AI195384|AV071549|AW536160|C920027I18Rik	caldesmon 1	protein-coding	2.55260109975964	1.4911143495823	2.12574616308358	3.33924251070159	2.89600185075734	2.89240470257478	1.95396582496788	2.88698804268579	0.27693653595481	0.747142335675744	0.998431161219273
Merged-chr16-24426410-4	chr16	24426302	24426502	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 1 of 12)	intron (NM_178665, intron 1 of 12)	-21689.0	NM_001145952	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46890466-4	chr8	46890365	46890565	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-96422.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-58508520-4	chr3	58508414	58508614	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4|LINE|L1	-17307.0	NM_001005509	229317.0	Mm.21617	NM_001005509	ENSMUSG00000027810	Eif2a	D030048D22|D3Ertd194e	eukaryotic translation initiation factor 2A	protein-coding	4.83931823002778	4.88785781271114	4.94611449200576	5.09699644544088	4.74202696673409	4.724637487426	4.81627505933056	4.84411829048333	-0.197923832063394	0.537358158660028	0.953963493057627
Merged-chr3-65653189-4	chr3	65653095	65653295	+	932.3250119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6093.0	NR_106200	102465905.0		NR_106200	ENSMUSG00000098944	Mir8120	Gm27637|mmu-mir-8120	microRNA 8120	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-176712588-2	chr1	176712488	176712688	+	611.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	59835.0	NR_029775	723921.0		NR_029775	ENSMUSG00000065573	Mir350	Mirn350|mir-350|mmu-mir-350	microRNA 350	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-134692649-4	chr7	134692542	134692742	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033420, intron 1 of 51)	ORR1D1|LTR|ERVL-MaLR	21955.0	NM_001033420	330662.0	Mm.436572	NM_001033420	ENSMUSG00000058325	Dock1	9130006G06Rik|AI854900|D630004B07Rik|b2b3190Clo	dedicator of cytokinesis 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-79587465-7	chr14	79587391	79587591	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026474)	promoter-TSS (NM_026474)	-169.0	NM_026474	67955.0	Mm.18972	NM_026474	ENSMUSG00000022024	Sugt1	2410174K12Rik|SGT1	SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-88636120-4	chr8	88636009	88636209	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027840)	promoter-TSS (NM_027840)	19.0	NM_027840	71607.0	Mm.270607	NM_027840	ENSMUSG00000031662	Snx20	9130017C17Rik	sorting nexin 20	protein-coding	5.00450121558416	4.82146650976621	5.69770678062013	5.27155241246589	5.45568639639963	5.29503556920095	5.68513130147229	6.0345954956598	0.468288481370287	0.123960178826416	0.551659579213406
Merged-chr7-28339784-1	chr7	28339684	28339884	+	1000.0	f0_balb.idr	Intergenic	B3|SINE|B2	-1065.0	NM_013676	20924.0	Mm.285906	NM_013676	ENSMUSG00000003435	Supt5	AL033283|AL033321|AU019549|Spt5|Supt5h	suppressor of Ty 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-57894482-2	chr15	57894382	57894582	+	613.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2064.0	NM_024207	67819.0	Mm.289387	NM_024207	ENSMUSG00000022365	Derl1	1110021N07Rik|AI195141|AW551338|Derlin-1	Der1-like domain family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89731179-4	chr3	89731079	89731279	+	833.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146296, intron 1 of 14)	intron (NM_001146296, intron 1 of 14)	461.0	NM_019655	56417.0	Mm.316628	NM_019655	ENSMUSG00000027951	Adar	AV242451|Adar1|Adar1p110|Adar1p150|DRADA|mZaADAR	adenosine deaminase, RNA-specific	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-78217492-2	chr10	78217392	78217592	+	571.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081055, intron 5 of 22)	intron (NM_001081055, intron 5 of 22)	27150.0	NM_001081055	216131.0	Mm.27539	NM_001081055	ENSMUSG00000000374	Trappc10	B230307C21Rik|Gm870|Tmem1|b2b2416Clo|b2b2613Clo	trafficking protein particle complex 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-156044383-1	chr1	156044283	156044483	+	686.0	f1_balb.idr	intron (NM_172843, intron 2 of 6)	intron (NM_172843, intron 2 of 6)	3522.0	NM_022329	240832.0	Mm.253335	NM_022329	ENSMUSG00000050565	Tor1aip2	1110020D10Rik|15kDa|A130072J07|AA103493|AW060462|AW610675|C77739|Ifrg15|Lull1	torsin A interacting protein 2	protein-coding	3.13570456297267	2.34310246370606	0.960769354195692	2.69010326481361	1.15033502112359	1.77353265197635	0.968660694682016	0.937388584854472	-3.26915912151107	0.00705542979598023	0.0855061077698695
Merged-chr3-27453837-6	chr3	27453780	27453980	+	886.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356953, intron 22 of 26)	B3|SINE|B2	82529.0	NM_177330	208188.0	Mm.194721	NM_177330	ENSMUSG00000051136	Ghsr	C530020I22Rik|GHRP|GHS-R|Ghsr1a	growth hormone secretagogue receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-53196012-1	chr15	53195912	53196112	+	691.0	f0_balb.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	150171.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-6167904-2	chr7	6167804	6168004	+	657.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-4609.0	NM_028316	72667.0	Mm.274089	NM_028316	ENSMUSG00000044876	Zfp444	2810031J10Rik|6230401O10Rik|mFLJ00134	zinc finger protein 444	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25248484-6	chr7	25248381	25248581	+	970.888916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010155, intron 1 of 3)	intron (NM_010155, intron 1 of 3)	2277.0	NM_010155	13875.0	Mm.8068	NM_010155	ENSMUSG00000040857	Erf	-	Ets2 repressor factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30969229-3	chr2	30969121	30969321	+	750.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR12B|LTR|ERVK	-1303.0	NM_144884	30931.0	Mm.154994	NM_144884	ENSMUSG00000026849	Tor1a	DQ2|Dyt1|torsinA	torsin family 1, member A (torsin A)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-106484142-3	chr3	106484038	106484238	+	962.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033207, intron 1 of 1)	intron (NR_033207, intron 1 of 1)	1688.0	NM_001278941	72121.0	Mm.14816	NM_028110	ENSMUSG00000027901	Dennd2d	2010308M01Rik|AI451421	DENN/MADD domain containing 2D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5602535-2	chr19	5602390	5602590	+	643.75	f1_balb.idr|f1_c57bl6.idr	TTS (NR_037603)	TTS (NR_037603)	617.0	NM_026616	68209.0	Mm.246200	NM_026616	ENSMUSG00000024925	Rnaseh2c	1500026D16Rik|AYP1	ribonuclease H2, subunit C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-111748777-1	chr13	111748677	111748877	+	561.0	f0_balb.idr	3' UTR (NM_011945, exon 20 of 20)	3' UTR (NM_011945, exon 20 of 20)	60216.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	1.0064595964794	2.62702830147711	2.61734697351786	1.32405623622815	1.01415794227004	2.64832911685462	2.6398094091578	1.3312972908537	0.0397021482780562	0.972889280448574	0.998431161219273
Merged-chr17-17064526-2	chr17	17064426	17064626	+	571.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163919, intron 1 of 4)	L1_Mus3|LINE|L1	423.0	NM_001163919	449000.0	Mm.483718	NM_001005358	ENSMUSG00000096696	Zfp960	-	zinc finger protein 960	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-5945325-4	chr11	5945207	5945407	+	737.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010292, intron 1 of 9)	intron (NM_010292, intron 1 of 9)	4774.0	NM_010292	103988.0	Mm.220358	NM_010292	ENSMUSG00000041798	Gck	GLK|Gk|Gls006|HK4|HKIV|HXKP|Hlb62|MODY2	glucokinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70833948-2	chr14	70833850	70834050	+	665.5	f0_c57.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-18983.0	NR_045939	73648.0	Mm.410851	NR_045939	ENSMUSG00000099528	2410012E07Rik	-	RIKEN cDNA 2410012E07 gene	ncRNA	0.949446912715343	0.950691102615851	1.26880772004243	0.566883502430062	0.843133184534012	1.22944430958588	0.575813474897983	0.742484799913474	-0.436063786086101	0.775277810178264	1
Merged-chr6-123262096-4	chr6	123262005	123262205	+	810.19165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010819)	promoter-TSS (NM_010819)	-2.0	NM_001163161	17474.0	Mm.441101	NM_010819	ENSMUSG00000030144	Clec4d	Clecsf8|Mpcl|mcl	C-type lectin domain family 4, member d	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-38821048-5	chr16	38820887	38821087	+	800.400024	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029042, intron 3 of 3)	intron (NM_029042, intron 3 of 3)	7762.0	NM_029042	74663.0	Mm.50263	NM_029042	ENSMUSG00000022798	4930435E12Rik	TSCPA	RIKEN cDNA 4930435E12 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-106169703-3	chr8	106169552	106169752	+	768.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357381, intron 1 of 9)	intron (NM_001357381, intron 1 of 9)	731.0	NM_001357381	330836.0	Mm.46749	NM_178798	ENSMUSG00000031904	Slc7a6	AI643885|LAT-2|LAT3|y+LAT-2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-113165026-3	chr5	113164922	113165122	+	854.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1709.0	NM_172884	243219.0	Mm.160131	NM_172884	ENSMUSG00000051339	2900026A02Rik	8430408O14Rik|A530094D01|AW539426|Gm449|Kiaa1671|mKIAA1671	RIKEN cDNA 2900026A02 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34899632-12	chr17	34899453	34899653	+	893.930542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001286573, exon 2 of 26)	exon (NM_001286573, exon 2 of 26)	579.0	NM_145830	110147.0	Mm.35345	NM_145830	ENSMUSG00000013787	Ehmt2	Bat8|D17Ertd710e|G9a|KMT1C|NG36	euchromatic histone lysine N-methyltransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117957208-2	chr11	117957108	117957308	+	556.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12158.0	NM_007707	12702.0	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-38711412-4	chr16	38711315	38711515	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020260, intron 1 of 11)	intron (NM_020260, intron 1 of 11)	1620.0	NM_020260	12549.0	Mm.370848	NM_020260	ENSMUSG00000022799	Arhgap31	5830477L08Rik|AU041750|Cdgap|D330026I07Rik	Rho GTPase activating protein 31	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-105039102-3	chr3	105038989	105039189	+	655.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030249, intron 1 of 5)	intron (NM_030249, intron 1 of 5)	13864.0	NM_001163332	80281.0	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-40430775-4	chr12	40430666	40430866	+	952.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172575, intron 1 of 12)	intron (NM_172575, intron 1 of 12)	15024.0	NM_172575	246196.0	Mm.26852	NM_172575	ENSMUSG00000055917	Zfp277	2410017E24Rik|NIRF4	zinc finger protein 277	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-56506125-4	chr9	56506039	56506239	+	971.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	87520.0	NM_025812	66867.0	Mm.150856	NM_025812	ENSMUSG00000032329	Hmg20a	1200004E06Rik|5730490E10Rik|Hmgxb1|Ibraf	high mobility group 20A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-31218456-4	chr6	31218375	31218575	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_110471)	promoter-TSS (NR_110471)	-1.0	NR_110470	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-119918867-4	chr6	119918753	119918953	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149727, intron 7 of 10)	intron (NR_149727, intron 7 of 10)	16155.0	NM_001166383	19365.0	Mm.149	NM_011236	ENSMUSG00000030166	Rad52	Rad52yh	RAD52 homolog, DNA repair protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-127356909-2	chr2	127356809	127357009	+	643.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001291003, exon 9 of 9)	3' UTR (NM_001291003, exon 9 of 9)	-6377.0	NM_009633	11552.0	Mm.347390	NM_009633	ENSMUSG00000058620	Adra2b	Adra-2b|[a]2B|a2b-AR|alpha2-C2|alpha2B	adrenergic receptor, alpha 2b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-102064661-2	chr5	102064561	102064761	+	660.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 1 of 66)	intron (NM_172882, intron 1 of 66)	5260.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69102307-2	chr11	69102207	69102407	+	832.428589	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159367, intron 8 of 22)	intron (NM_001159367, intron 8 of 22)	2155.0	NM_001159367	18626.0	Mm.7373	NM_011065	ENSMUSG00000020893	Per1	Hftm|Per|m-rigui|mPer1	period circadian clock 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-65151948-4	chr6	65151848	65152048	+	924.8916630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-7218.0	NM_019455	54486.0	Mm.410688	NM_019455	ENSMUSG00000029919	Hpgds	H-PGDS|Ptgds2	hematopoietic prostaglandin D synthase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-73616813-2	chr15	73616713	73616913	+	688.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033219, intron 1 of 7)	PB1D7|SINE|Alu	511.0	NM_001357747	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-27139180-2	chr16	27139080	27139280	+	699.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-147528.0	NM_001285918	239789.0	Mm.326909	NM_001013761	ENSMUSG00000068428	Gmnc	Gemc1|Gm1778|Gm606	geminin coiled-coil domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191329184-4	chr1	191329088	191329288	+	946.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025864, intron 2 of 7)	intron (NM_025864, intron 2 of 7)	3223.0	NM_025864	66950.0	Mm.236300	NM_025864	ENSMUSG00000026627	Tmem206	2310028N02Rik|AI118576	transmembrane protein 206	protein-coding	0.265068916436963	-0.319165782480388	-0.520717213103568	-0.523756559697279	-0.378688710200589	-0.51589005287444	-0.519848372005971	-0.523225585816529	-2.62911396435286	0.308154053158027	1
Merged-chr17-32091464-4	chr17	32091407	32091607	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027316)	promoter-TSS (NR_027316)	-84.0	NR_027316	435518.0	Mm.328944	NR_027316	ENSMUSG00000002791	Pdxk-ps	Gm9743	pyridoxal (pyridoxine, vitamin B6) kinase, pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-84982087-4	chr15	84981975	84982175	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033273, intron 1 of 9)	intron (NM_001033273, intron 1 of 9)	5896.0	NM_001033273	223739.0	Mm.323925	NM_001033273	ENSMUSG00000036046	5031439G07Rik	AW554572|mKIAA0930	RIKEN cDNA 5031439G07 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4192028-4	chr19	4191935	4192135	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031868)	promoter-TSS (NM_031868)	-139.0	NM_031868	19045.0	Mm.1970	NM_031868	ENSMUSG00000040385	Ppp1ca	Ppp1c|dism2	protein phosphatase 1, catalytic subunit, alpha isoform	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-100377888-3	chr9	100377771	100377971	+	776.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	108602.0	NM_001033543	213208.0	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	-1.26687315729308	-1.51144556179868	-1.52074032698608	-1.52837532385482	-1.39377469321613	-1.50943134740853	-1.5186361958831	-1.52700866306571	-0.563662181339258	0.873093626595385	1
Merged-chr19-15145669-2	chr19	15145569	15145769	+	602.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-547486.0	NM_001302947	21888.0	Mm.103638	NM_011600	ENSMUSG00000024642	Tle4	5730411M05Rik|AA792082|Bce-1|Bce1|ESTM13|ESTM14|Grg4|X83332|X83333|grg-4	transducin-like enhancer of split 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85492287-4	chr12	85492205	85492405	+	990.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18415.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-75585145-4	chr2	75585042	75585242	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74117.0	NM_146130	229279.0	Mm.316306	NM_053263	ENSMUSG00000059005	Hnrnpa3	2410013L13Rik|2610209F03Rik|2610510D13Rik|Hnrpa3	heterogeneous nuclear ribonucleoprotein A3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-57951782-4	chr11	57951585	57951785	+	893.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57379.0	NM_028451	73158.0	Mm.248843	NM_028451	ENSMUSG00000037331	Larp1	1810024J12Rik|3110040D16Rik|Larp|mKIAA0731	La ribonucleoprotein domain family, member 1	protein-coding	2.48666546658616	2.88263840431535	2.58164238070947	1.94887580509867	2.59885991587354	2.56302545362473	2.60126190295138	2.89711220956266	0.328486933421738	0.661788304866468	0.991056031673253
Merged-chr2-83771269-2	chr2	83771169	83771369	+	559.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_008402, exon 12 of 30)	exon (NM_008402, exon 12 of 30)	-41459.0	NM_175514	241520.0	Mm.330351	NM_175514	ENSMUSG00000048388	Fam171b	D430039N05Rik	family with sequence similarity 171, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-116341215-4	chr3	116341126	116341326	+	773.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001173553, intron 5 of 13)	intron (NM_001173553, intron 5 of 13)	13018.0	NM_001355646	229776.0	Mm.17647	NM_001080818	ENSMUSG00000033502	Cdc14a	A830059A17Rik|CDC14A2|CDC14a1|Cdc14	CDC14 cell division cycle 14A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-6186647-2	chr6	6186547	6186747	+	575.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177572, intron 2 of 17)	B1_Mus1|SINE|Alu	30526.0	NM_015829	50799.0	Mm.24513	NM_015829	ENSMUSG00000015112	Slc25a13	AI785475|Ctrn	solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-45063930-3	chr19	45063757	45063957	+	785.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11384.0	NM_001362398	107250.0	Mm.24417	NM_178929	ENSMUSG00000025213	Kazald1	AI842353|Bono1|IGFBP-rP10	Kazal-type serine peptidase inhibitor domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-22476907-4	chr8	22476806	22477006	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001012667)	promoter-TSS (NM_001012667)	-27.0	NM_001146117	102032.0	Mm.378231	NM_001012667	ENSMUSG00000031534	Smim19	AI316807|BG694986|EST-c39	small integral membrane protein 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-44730617-4	chr13	44730519	44730719	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001205044)	promoter-TSS (NM_001205044)	-155.0	NM_021878	16468.0	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-81014071-1	chr13	81013971	81014171	+	940.0	f0_balb.idr	intron (NR_015587, intron 1 of 1)	intron (NR_015587, intron 1 of 1)	49997.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-136177992-2	chr4	136177909	136178109	+	747.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177733, intron 1 of 6)	intron (NM_177733, intron 1 of 6)	-2773.0	NM_001305399	242705.0	Mm.307932	NM_177733	ENSMUSG00000018983	E2f2	E2F-2	E2F transcription factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-54327843-4	chr6	54327702	54327902	+	936.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030024, intron 1 of 1)	CpG	790.0	NM_030024	78004.0	Mm.41984	NM_030024	ENSMUSG00000045725	Prr15	E130201N16Rik|G90	proline rich 15	protein-coding	2.26747384480806	2.1841278109785	2.55102894872784	1.05681038078352	1.58108179997895	2.07907075956627	1.33817776845473	1.06054121686969	-1.49497308614586	0.191506443980657	0.66975154922656
Merged-chr17-13858807-2	chr17	13858707	13858907	+	595.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_151731, intron 20 of 33)	intron (NR_151731, intron 20 of 33)	-89566.0	NM_001122977	635895.0	Mm.388844	NM_001122977	ENSMUSG00000067941	Gm7168	EG635895	predicted gene 7168	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-148980542-2	chr6	148980442	148980642	+	710.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34072.0	NM_001361398	56306.0	Mm.18637	NM_019643	ENSMUSG00000039985	Fam60a	Ppcs1|Pptcs1|Sinhcaf|Tera	family with sequence similarity 60, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-48800372-4	chr11	48800220	48800420	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008143)	promoter-TSS (NM_008143)	-40.0	NM_008143	14694.0	Mm.5305	NM_008143	ENSMUSG00000020372	Rack1	AL033335|GB-like|Gnb2-rs1|Gnb2l1|p205	receptor for activated C kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-179803131-3	chr1	179803036	179803236	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026375, intron 1 of 35)	CpG	879.0	NM_026375	226747.0	Mm.128165	NM_026375	ENSMUSG00000026491	Ahctf1	6230412P20Rik|AV011447|Elys	AT hook containing transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-29420177-4	chr19	29420079	29420279	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021396, intron 1 of 5)	L1MB7|LINE|L1	9260.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-92218037-2	chr1	92217937	92218137	+	585.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TAAA)n|Simple_repeat|Simple_repeat	-37696.0	NM_207225	208727.0	Mm.318567	NM_207225	ENSMUSG00000026313	Hdac4	4932408F19Rik|HD4	histone deacetylase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-50135754-2	chr11	50135654	50135854	+	598.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029745, intron 1 of 20)	intron (NM_029745, intron 1 of 20)	4394.0	NM_029745	76795.0	Mm.290975	NM_029745	ENSMUSG00000036644	Tbc1d9b	-	TBC1 domain family, member 9B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-66932533-3	chr15	66932438	66932638	+	685.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008681, intron 15 of 15)	intron (NM_008681, intron 15 of 15)	37103.0	NM_008681	17988.0	Mm.30837	NM_008681	ENSMUSG00000005125	Ndrg1	CAP43|CMT4D|DRG1|HMSNL|NMSL|Ndr1|Ndrl|PROXY1|RTP|TDD5	N-myc downstream regulated gene 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-127041412-4	chr4	127041301	127041501	+	825.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	19753.0	NM_026670	68310.0	Mm.273806	NM_026670	ENSMUSG00000043872	Zmym1	5830412B09Rik|AW209050	zinc finger, MYM domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133931556-4	chr4	133931449	133931649	+	894.3583369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	36442.0	NM_016957	15331.0	Mm.319660	NM_016957	ENSMUSG00000003038	Hmgn2	HMG-17|Hmg17	high mobility group nucleosomal binding domain 2	protein-coding	3.55346308358607	3.91845636158995	4.58037486683487	3.83006564273942	5.1582976358845	4.3194062052949	4.51771076403815	4.65372832601903	0.888723226571903	0.0372428393872234	0.274658387744709
Merged-chr13-35380793-3	chr13	35380702	35380902	+	934.488892	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-168754.0	NR_126478	75543.0	Mm.489052	NR_126478	ENSMUSG00000113770	1700019C18Rik	-	RIKEN cDNA 1700019C18 gene	ncRNA	1.15357902496493	0.832113591059848	0.811006687305328	0.794176190661948	1.85537149495365	2.4556157810839	1.44752565305407	1.53752595244781	3.9037883945753	0.00665367595447404	0.0821868643179703
Merged-chr11-53707311-4	chr11	53707208	53707408	+	989.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009012)	promoter-TSS (NM_009012)	11.0	NM_009012	19360.0	Mm.4888	NM_009012	ENSMUSG00000020380	Rad50	Mrell|Rad50l	RAD50 double strand break repair protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-13384948-3	chr15	13384857	13385057	+	800.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-211282.0	NM_007666	12563.0	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-81214147-4	chr7	81214008	81214208	+	956.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008803, intron 1 of 21)	CpG	304.0	NM_008803	18584.0	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-70113640-4	chr12	70113566	70113766	+	788.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1631.0	NR_104397	18080.0	Mm.244047	NM_008697	ENSMUSG00000021068	Nin	3110068G20Rik|AI385615|AU024711|mKIAA1565	ninein	protein-coding	0.232360380664742	-0.33097840122848	-0.335617706544277	-0.339202362348293	-0.344276170361864	-0.329933677067434	-0.334593816574332	0.407312287758859	0.526566728551958	0.841852595799548	1
Merged-chr7-28268006-3	chr7	28267955	28268155	+	847.9833369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_198425, exon 1 of 1)	exon (NM_198425, exon 1 of 1)	174.0	NM_198425	386655.0	Mm.258201	NM_198425	ENSMUSG00000046058	Eid2	Cri2|EID-2	EP300 interacting inhibitor of differentiation 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-99979093-4	chr5	99979005	99979205	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001077267)	promoter-TSS (NM_001077267)	-167.0	NM_001077267	11991.0	Mm.150231	NM_007516	ENSMUSG00000000568	Hnrnpd	Auf1|Hnrpd	heterogeneous nuclear ribonucleoprotein D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-92532280-2	chr13	92532180	92532380	+	801.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1470.0	NM_173392	218441.0	Mm.259585	NM_173392	ENSMUSG00000021706	Zfyve16	AI035632|B130024H06Rik|B130031L15|mKIAA0305	zinc finger, FYVE domain containing 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84972879-2	chr8	84972778	84972978	+	784.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001317385, intron 5 of 5)	ID_B1|SINE|B4	3256.0	NM_011563	21672.0	Mm.347009	NM_011563	ENSMUSG00000005161	Prdx2	AL022839|Band-8|NkefB|PRP|PrxII|TDX1|TPx|TPx-B|TR|TSA|Tdpx1|Torin	peroxiredoxin 2	protein-coding	2.85974703562911	1.97011082629826	1.07104979663094	1.3012726038752	2.73345854028197	1.98632716626297	1.34921136828694	1.30792635163479	-0.0570620355603515	0.959897813439222	0.998431161219273
Merged-chr6-13603329-4	chr6	13603205	13603405	+	964.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_028990, exon 2 of 5)	exon (NM_028990, exon 2 of 5)	4793.0	NR_155435	101118.0	Mm.254845	NM_028990	ENSMUSG00000029569	Tmem168	5730526F17Rik|8430437G11Rik|AI462344|AI504145	transmembrane protein 168	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115133983-4	chr11	115133876	115134076	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145634)	promoter-TSS (NM_145634)	16.0	NM_001347648	246746.0	Mm.277387	NM_145634	ENSMUSG00000047798	Cd300lf	CLIM1|CLM-1|CLM1|Digr2|F730004D16Rik|IREM1|IgSF13|LMIR3|Pigr3	CD300 molecule like family member F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-84444852-1	chr1	84444752	84444952	+	564.0	f0_balb.idr	intron (NM_152915, intron 8 of 12)	intron (NM_152915, intron 8 of 12)	-160207.0	NM_001003948	98496.0	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4|P-CLI1	phosphotyrosine interaction domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-118638148-3	chr5	118638024	118638224	+	864.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347445, intron 2 of 30)	intron (NM_001347445, intron 2 of 30)	77405.0	NM_172424	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	2.55863895490206	2.63295069212264	3.42817740873737	1.40984413306938	3.18454087766163	3.88727301371249	1.47087572549707	3.59753219963325	0.995567075931206	0.252012523552678	0.749776101430909
Merged-chr16-26674539-2	chr16	26674439	26674639	+	691.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_152416, intron 2 of 12)	Lx8|LINE|L1	80963.0	NR_105063	100504628.0	Mm.393275	NR_105063	ENSMUSG00000092545	Gm20319	-	predicted gene, 20319	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-23984874-4	chr16	23984758	23984958	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009744, intron 1 of 9)	intron (NM_009744, intron 1 of 9)	-3575.0	NM_001348026	12053.0	Mm.347398	NM_009744	ENSMUSG00000022508	Bcl6	Bcl5	B cell leukemia/lymphoma 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35264414-4	chr17	35264333	35264533	+	844.375	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001267808, intron 7 of 11)	intron (NM_001267808, intron 7 of 11)	1310.0	NM_001267808	14980.0	Mm.439675	NM_001267808		H2-L	H-2L	histocompatibility 2, D region locus L	protein-coding	3.00209898635351	1.35490661927085	1.31439025990573	2.976769711822	2.90948412466307	2.54376734009003	1.60139828241499	2.58780677478319	0.124517586805478	0.901892407054576	0.998431161219273
Merged-chr1-72106297-4	chr1	72106100	72106300	+	966.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-101005.0	NR_040454	71134.0	Mm.370574	NR_040454	ENSMUSG00000101848	4933417E11Rik	-	RIKEN cDNA 4933417E11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-106387015-3	chr4	106386906	106387106	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183225, intron 32 of 67)	L2a|LINE|L2	70793.0	NM_183225	329908.0	Mm.234544	NM_183225	ENSMUSG00000028514	Usp24	2700066K03Rik|2810030C21Rik|AI414051|B130021E18|C79851	ubiquitin specific peptidase 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-50244044-4	chr11	50243964	50244164	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5532.0	NR_132733	17001.0	Mm.245151	NM_008521	ENSMUSG00000020377	Ltc4s	-	leukotriene C4 synthase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-18957993-4	chr11	18957894	18958094	+	764.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010789, intron 7 of 11)	intron (NM_010789, intron 7 of 11)	60975.0	NM_001193271	17268.0	Mm.356578	NM_010789	ENSMUSG00000020160	Meis1	C530044H18Rik|Evi8	Meis homeobox 1	protein-coding	-1.84243072036643	-1.81277471750326	-1.82174293754767	-1.68799865697732	-1.69923788026336	-1.81083126680782	-1.81971272910741	-1.82779105346464	0.037684011990387	0.991491645451152	1
Merged-chr1-52653558-4	chr1	52653471	52653671	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MusHAL1|LINE|L1	22866.0	NM_001142647	227094.0	Mm.83541	NM_172654	ENSMUSG00000043015	Nemp2	5330401P04Rik|9830163O08|Tmem194b	nuclear envelope integral membrane protein 2	protein-coding	4.84314964084267	4.84582388319671	5.13234979704345	4.57114807000289	5.00035378105684	4.72782140581477	5.75908661546865	4.21770019695142	0.218447304228278	0.567255147131388	0.962562732139494
Merged-chr5-107960964-4	chr5	107960902	107961102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026062, intron 1 of 4)	ORR1D2|LTR|ERVL-MaLR	26075.0	NM_026062	67266.0	Mm.277897	NM_026062	ENSMUSG00000029270	Fam69a	2900024C23Rik|AI315274	family with sequence similarity 69, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-34886153-4	chr18	34886058	34886258	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24951.0	NM_007913	13653.0	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95625314-4	chr3	95625202	95625402	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001026212, intron 1 of 2)	intron (NM_001026212, intron 1 of 2)	322.0	NM_001026212	56205.0	Mm.241365	NM_019561	ENSMUSG00000038619	Ensa	1700020C18Rik|2610007F17Rik|AI451924	endosulfine alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-122463815-7	chr14	122463664	122463864	+	950.595215	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022987, intron 1 of 1)	CpG	1894.0	NM_022987	65100.0	Mm.390761	NM_022987	ENSMUSG00000041703	Zic5	1700049L20Rik|Opr	zinc finger protein of the cerebellum 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-105698014-1	chr5	105697914	105698114	+	644.0	f1_balb.idr	Intergenic	Intergenic	-1955.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	0.322775512933287	0.354635956672578	1.31792212531698	0.336343162470394	1.17518457076961	1.07724546474194	0.346651636336944	0.337753619527896	0.537461247416416	0.780346145333934	1
Merged-chr17-25852469-2	chr17	25852369	25852569	+	609.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001163766, exon 21 of 41)	exon (NM_001163766, exon 21 of 41)	-7618.0	NM_145999	214952.0	Mm.40907	NM_145999	ENSMUSG00000025733	Rhot2	Arht2|Miro2	ras homolog family member T2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122465148-4	chr8	122465053	122465253	+	953.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001033142)	TTS (NM_001033142)	-4461.0	NM_013914	30927.0	Mm.103673	NM_013914	ENSMUSG00000006587	Snai3	AI643946|Smuc|Zfp293	snail family zinc finger 3	protein-coding	3.03407693280657	1.91901064899615	2.55037980303242	2.47823102916914	2.03536775950497	1.43748467021579	2.57047090090189	2.49105740102987	-0.766498163579167	0.386075331822456	0.876318810939384
Merged-chr10-75669541-2	chr10	75669441	75669641	+	762.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172549, intron 29 of 36)	intron (NM_172549, intron 29 of 36)	-25533.0	NM_027890	71733.0	Mm.247956	NM_027890	ENSMUSG00000006342	Susd2	1200011D11Rik	sushi domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75457983-3	chr11	75458000	75458200	+	915.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-3383.0	NM_138950	192652.0	Mm.340378	NM_138950	ENSMUSG00000045374	Wdr81	BC054822|Gm883|mFLJ00182|nur5	WD repeat domain 81	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-58749774-1	chr4	58749674	58749874	+	557.0	f1_balb.idr	Intergenic	RLTR31D_MM|LTR|ERVK	35946.0	NM_146920	258922.0	Mm.223327	NM_146920	ENSMUSG00000043385	Olfr267	MOR262-1	olfactory receptor 267	protein-coding	0.931432511032917	1.19567962723965	0.562347866280408	0.555742389636424	0.826923067589328	0.773704481026136	0.904284198558163	1.20827543307416	0.490689085858858	0.749662406871116	1
Merged-chr9-107550721-1	chr9	107550621	107550821	+	813.0	f1_balb.idr	promoter-TSS (NM_001243748)	promoter-TSS (NM_001243748)	-834.0	NM_001243748	56289.0	Mm.12091	NM_019713	ENSMUSG00000010067	Rassf1	123F2|AA536941|AU044980|NORE2A|RDA32|REH3P21|Rassf1A|Rassf1B|Rassf1C	Ras association (RalGDS/AF-6) domain family member 1	protein-coding	1.29056111894313	1.2826659953066	0.962736449696225	0.592470369792801	0.580743096159416	0.61361024232816	0.804007222816737	1.47633659180432	-0.552289414325498	0.728165836886809	0.998431161219273
Merged-chr15-81009708-2	chr15	81009608	81009808	+	566.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_134091, exon 13 of 22)	exon (NM_134091, exon 13 of 22)	31943.0	NM_134091	105835.0	Mm.274943	NM_134091	ENSMUSG00000042303	Sgsm3	1810012I01Rik|AI428557|BB175482|Cip85|R75178|RUSC3|Rutbc3	small G protein signaling modulator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-20516970-4	chr16	20516880	20517080	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347176)	promoter-TSS (NM_001347176)	-6.0	NM_001347176	13544.0	Mm.247259	NM_007889	ENSMUSG00000003233	Dvl3	b2b2866Clo	dishevelled segment polarity protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-121694111-4	chr3	121694011	121694211	+	911.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23348.0	NM_001033814	619318.0	Mm.371258	NM_001033814	ENSMUSG00000074248	4930432M17Rik	-	RIKEN cDNA 4930432M17 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-64126138-4	chr13	64126030	64126230	+	804.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001321, intron 1 of 11)	MTD|LTR|ERVL-MaLR	3200.0	NM_001001321	70484.0	Mm.133731	NM_001001321	ENSMUSG00000033114	Slc35d2	5730408I21Rik|SQV7L|UGTrel8|hfrc|mUGTrel8	solute carrier family 35, member D2	protein-coding	2.89279201381649	3.14149073988488	3.52867564262034	3.29480968112268	2.8243180203388	3.05457227623557	2.39436633036265	3.45137508576031	-0.415974140128869	0.511561089066865	0.94512318675548
Merged-chr17-56611148-2	chr17	56611048	56611248	+	550.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1377.0	NM_153152	224904.0	Mm.34002	NM_153152	ENSMUSG00000049760	2410015M20Rik	Mic13|QIL1|sr104	RIKEN cDNA 2410015M20 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-129634551-3	chr3	129634427	129634627	+	850.805542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_130450, exon 5 of 5)	3' UTR (NM_130450, exon 5 of 5)	90559.0	NM_001310737	13645.0	Mm.252481	NM_010113	ENSMUSG00000028017	Egf	AI790464	epidermal growth factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30929080-4	chr2	30928976	30929176	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23925.0	NM_133673	30934.0	Mm.249164	NM_133673	ENSMUSG00000026848	Tor1b	2610016F05Rik|DQ1|torsinB	torsin family 1, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-25694791-3	chr2	25694707	25694907	+	853.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5267.0	NM_153558	227627.0	Mm.44630	NM_153558	ENSMUSG00000062061	Obp2a	BC027556|Lcn13	odorant binding protein 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-13455357-2	chr8	13455257	13455457	+	684.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001143672, intron 5 of 7)	intron (NM_001143672, intron 5 of 7)	19898.0	NM_001143672	272465.0	Mm.250502	NM_001143671	ENSMUSG00000038457	Tmem255b	Fam70b|Gm687	transmembrane protein 255B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-15203020-3	chr3	15202917	15203117	+	944.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	129285.0	NM_001076679	751864.0	Mm.431296	NM_001076679	ENSMUSG00000078783	Gm9733	-	predicted gene 9733	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83307083-2	chr11	83306983	83307183	+	575.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027915, intron 1 of 20)	B3A|SINE|B2	4386.0	NM_001035854	71770.0	Mm.39053	NM_027915	ENSMUSG00000035152	Ap2b1	1300012O03Rik|AI788979|AP105B	adaptor-related protein complex 2, beta 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-114925382-4	chr4	114925230	114925430	+	871.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_015758, exon 1 of 1)	exon (NM_015758, exon 1 of 1)	683.0	NM_015758	30923.0	Mm.377122	NM_015758	ENSMUSG00000044518	Foxe3	FREAC8|dyl|rct	forkhead box E3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-64402110-4	chr13	64401997	64402197	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER68-int|LTR|ERVL	-30456.0	NM_053180	105278.0	Mm.74982	NM_053180	ENSMUSG00000021483	Cdk20	4932702G04Rik|AU019450|AW558027|CDCH|Ccrk|PNQLARE|p42	cyclin-dependent kinase 20	protein-coding	5.77627544609509	6.2558302983803	6.08769115861028	6.41274852606006	5.93919419537412	6.31190945419523	6.82284330559535	6.14082470432673	0.206525211394207	0.405851407435473	0.89095290927429
Merged-chr7-19350033-2	chr7	19349933	19350133	+	621.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001127324, intron 3 of 6)	intron (NM_001127324, intron 3 of 6)	4962.0	NM_007948	13870.0	Mm.280913	NM_007948	ENSMUSG00000003549	Ercc1	Ercc-1	excision repair cross-complementing rodent repair deficiency, complementation group 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-173762686-1	chr1	173762586	173762786	+	662.0	f0_c57.idr	intron (NM_008329, intron 1 of 8)	intron (NM_008329, intron 1 of 8)	4233.0	NM_008329	15951.0	Mm.261270	NM_008329	ENSMUSG00000073489	Ifi204	Ifi16|p204	interferon activated gene 204	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-76265952-2	chr16	76265852	76266052	+	762.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	107097.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127666180-2	chr10	127666080	127666280	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045171)	promoter-TSS (NR_045171)	523.0	NM_001122895	17937.0	Mm.336898	NM_008668	ENSMUSG00000025402	Nab2	AI451907	Ngfi-A binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-37504063-1	chr13	37503963	37504163	+	614.5	f1_balb.idr	Intergenic	Lx8|LINE|L1	158718.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	2.68484580222605	2.81110793901978	1.97392776881657	2.91934201285889	2.41006078846912	3.13189075824976	1.48646404355896	3.40903712672756	0.306357001099755	0.713705291030721	0.998431161219273
Merged-chr1-170884944-3	chr1	170884802	170885002	+	875.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151477, intron 1 of 4)	intron (NR_151477, intron 1 of 4)	638.0	NR_151476	80915.0	Mm.34365	NM_023173	ENSMUSG00000026659	Dusp12	1190004O14Rik|AA027408|AW049275|ESTM36|LMW-DSP4|T-DSP4|VH1|mVH1	dual specificity phosphatase 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-79744367-2	chr15	79744232	79744432	+	650.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045069, intron 2 of 3)	MTD|LTR|ERVL-MaLR	1634.0	NR_045069	100504191.0	Mm.421420	NR_045069	ENSMUSG00000087543	Gm16576	-	predicted gene 16576	ncRNA	-1.06932346315282	-1.04545378193536	-0.220844647149311	-1.06494782147003	-1.06867040657128	-1.04264807175102	-1.05547001227371	-1.06448932552894	-3.08190232315036	0.346744811462451	1
Merged-chr17-78400731-4	chr17	78400645	78400845	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001285946, exon 5 of 7)	exon (NM_001285946, exon 5 of 7)	17407.0	NM_001285949	225020.0	Mm.236835	NM_199448	ENSMUSG00000056121	Fez2	9030616F16|D17Ertd315e	fasciculation and elongation protein zeta 2 (zygin II)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-88377384-2	chr10	88377284	88377484	+	722.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR41B|LTR|ERVL	-2028.0	NM_001004164	432486.0	Mm.335190	NM_001004164	ENSMUSG00000035311	Gnptab	EG432486|mKIAA1208	N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-46852859-4	chr1	46852757	46852957	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356416, intron 1 of 10)	CpG	761.0	NM_001356416	227059.0	Mm.233889	NM_172653	ENSMUSG00000025986	Slc39a10	2900042E17Rik|5430433I10|Zip10|mKIAA1265	solute carrier family 39 (zinc transporter), member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-33919137-2	chr17	33919037	33919237	+	741.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009318)	promoter-TSS (NM_009318)	-341.0	NM_001025313	21356.0	Mm.154457	NM_009318	ENSMUSG00000024308	Tapbp	D17Wsu91e|TPN	TAP binding protein	protein-coding	1.18381285235145	1.35366699134148	0.890637665832903	1.3575002582205	1.09116366011076	0.716706976763618	0.706654355569982	1.1511648486645	-1.30434693735838	0.364109523011106	0.859845044696348
Merged-chr15-28185043-2	chr15	28184943	28185143	+	598.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-18723.0	NM_133365	110082.0	Mm.248464	NM_133365	ENSMUSG00000022262	Dnah5	AU022615|Dnahc5|Mdnah5|b2b1134Clo|b2b1154Clo|b2b1537Clo|b2b1565Clo|b2b3491Clo|b2b601Clo|mKIAA1603	dynein, axonemal, heavy chain 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-37707289-2	chr13	37707189	37707389	+	673.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-118749.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-70193601-2	chr10	70193501	70193701	+	789.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001111121)	TTS (NM_001111121)	-11063.0	NM_001304739	69563.0	Mm.64672	NM_001304739	ENSMUSG00000019933	Mrln	2310015B20Rik|Linc-RAM|Mln	myoregulin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-88509293-4	chr17	88509203	88509403	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20821.0	NM_028658	73825.0	Mm.271817	NM_028658	ENSMUSG00000034709	Ppp1r21	1110018J12Rik|AI426045|AW550781|Ccdc128|Klraq1	protein phosphatase 1, regulatory subunit 21	protein-coding	4.74287890675522	4.89121567390503	4.98828612738048	4.13069373307385	5.39741234567858	5.72779742577138	4.52413290525042	4.63779980098241	0.528502737005494	0.165348661806812	0.630328292001101
Merged-chr3-100765566-4	chr3	100765467	100765667	+	723.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1A|DNA|hAT-Charlie	-59892.0	NM_178594	242122.0	Mm.137467	NM_178594	ENSMUSG00000051076	Vtcn1	B7h4|B7s1|B7x|BC032925	V-set domain containing T cell activation inhibitor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-29869892-2	chr2	29869792	29869992	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_207298, intron 1 of 11)	intron (NM_207298, intron 1 of 11)	398.0	NM_207298	99151.0	Mm.296336	NM_207298	ENSMUSG00000039787	Cercam	2600006K01Rik|AL024097|Ceecam1	cerebral endothelial cell adhesion molecule	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-59608591-4	chr1	59608494	59608694	+	967.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013771, intron 13 of 19)	intron (NM_001013771, intron 13 of 19)	62240.0	NM_009460	22218.0	Mm.362118	NM_009460	ENSMUSG00000026021	Sumo1	GMP1|PIC1|SENTRIN|SMT3|SMT3H3|SMTP3|SUMO-1|Smt3C|Ubl1	small ubiquitin-like modifier 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-86671027-4	chr6	86670908	86671108	+	927.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1849.0	NM_010751	17119.0	Mm.279580	NM_010751	ENSMUSG00000001156	Mxd1	AW122478|Mad|Mad1	MAX dimerization protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-75049296-4	chr9	75049209	75049409	+	882.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357880, intron 2 of 3)	intron (NM_001357880, intron 2 of 3)	11577.0	NM_021548	59046.0	Mm.247837	NM_021548	ENSMUSG00000007656	Arpp19	19kDa|2700024H10Rik|ARPP-19|AW559096|Arpp12	cAMP-regulated phosphoprotein 19	protein-coding	1.89923910082922	1.43241345400878	2.22968595022293	2.89906321232676	2.31554869192468	2.15865249260916	3.5042066472288	2.83387343383864	1.17061688839349	0.181395957023724	0.654749907452058
Merged-chr2-131196723-4	chr2	131196595	131196795	+	936.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111075, intron 13 of 14)	intron (NM_001111075, intron 13 of 14)	9747.0	NM_001111075	12531.0	Mm.38444	NM_023117	ENSMUSG00000027330	Cdc25b	AI604853	cell division cycle 25B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-83327624-3	chr4	83327489	83327689	+	881.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3400.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	1.04797075838368	1.36973813229147	0.813018239986773	0.786982345086533	0.547721902210789	2.07525409254445	0.820346025925208	0.567660737606861	0.650904395045756	0.657575359993323	0.988704682801132
Merged-chr14-63148741-2	chr14	63148641	63148841	+	781.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360211, intron 7 of 7)	ORR1F|LTR|ERVL-MaLR	26279.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-72135778-4	chr8	72135665	72135865	+	965.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001491, intron 1 of 7)	CpG	473.0	NM_001001491	326618.0	Mm.295124	NM_001001491	ENSMUSG00000031799	Tpm4	2610528G24Rik|Tpm4.2|Tpm4.2cy	tropomyosin 4	protein-coding	3.13876939788806	2.70573505362005	3.62739027866024	3.2222295840669	3.62116439085977	2.88067743924919	3.95772300446715	3.14741747281457	0.411529372337664	0.490716387151862	0.934345795476137
Merged-chr16-32814604-4	chr16	32814489	32814689	+	995.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4143.0	NM_001256309	381043.0	Mm.303864	NM_001256309	ENSMUSG00000094430	Smbd1	Gm1743|Gm933	somatomedin B domain containing 1	protein-coding	4.20770903486086	3.58855136781227	3.71705557443727	3.61517615124507	3.77858977449768	3.51714609777176	3.95317518187144	3.47501327833096	-0.173963840547505	0.722760569291259	0.998431161219273
Merged-chr10-78163523-2	chr10	78163423	78163623	+	679.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_138601, exon 6 of 7)	exon (NM_138601, exon 6 of 7)	6245.0	NM_138601	28295.0	Mm.268691	NM_138601	ENSMUSG00000053329	D10Jhu81e	C21orf33|ES1	DNA segment, Chr 10, Johns Hopkins University 81 expressed	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-84573849-4	chr10	84573749	84573949	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3098.0	NM_146008	216198.0	Mm.296142	NM_146008	ENSMUSG00000020034	Tcp11l2	E430026E19Rik	t-complex 11 (mouse) like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-32330425-4	chr19	32330302	32330502	+	997.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 2 of 9)	intron (NM_144792, intron 2 of 9)	18914.0	NM_001168525	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-14865206-1	chr4	14865106	14865306	+	540.0	f0_balb.idr	intron (NM_028264, intron 1 of 6)	intron (NM_028264, intron 1 of 6)	987.0	NM_028264	72519.0	Mm.279158	NM_028264	ENSMUSG00000028221	Tmem55a	2610319K07Rik|AI315591|AV001360|Pip4p2	transmembrane protein 55A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-66678505-2	chr18	66678405	66678605	+	544.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	174327.0	NR_040528	100503565.0	Mm.98256	NR_040528		Gm9926	-	predicted gene 9926	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-17433140-4	chr14	17433027	17433227	+	858.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-227833.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-84789305-2	chr17	84789205	84789405	+	641.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028233, intron 1 of 37)	intron (NM_028233, intron 1 of 37)	1481.0	NM_028233	72416.0	Mm.217027	NM_028233	ENSMUSG00000024120	Lrpprc	3110001K13Rik|C76645|Gp130|Lrp130|Lsfc	leucine-rich PPR-motif containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19717667-2	chr7	19717567	19717767	+	718.833374	f1_balb.idr|f1_c57bl6.idr	exon (NM_008990, exon 9 of 9)	exon (NM_008990, exon 9 of 9)	-2238.0	NM_016871	53333.0	Mm.61682	NM_016871	ENSMUSG00000002984	Tomm40	AW539759|Mom35|Tom40	translocase of outer mitochondrial membrane 40	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128303304-4	chr10	128303198	128303398	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252327)	promoter-TSS (NM_001252327)	-37.0	NM_133992	103135.0	Mm.244183	NM_133992	ENSMUSG00000005682	Pan2	1200014O24Rik|AI047843|AW742773|Usp52|mKIAA0710	PAN2 poly(A) specific ribonuclease subunit	protein-coding	5.705217361271	5.34114641793519	5.88268784759758	6.11126871112371	5.72462450265195	5.33875531291662	5.80514759400494	6.46289096663104	0.120031578475381	0.677644068772266	0.994818437932722
Merged-chr10-100741763-4	chr10	100741614	100741814	+	944.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_152765)	promoter-TSS (NR_152765)	-79.0	NR_152765	102639396.0	Mm.404529	NR_152765		Gm35722	-	predicted gene, 35722	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-13572576-3	chr2	13572394	13572594	+	669.253967	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1817.0	NM_011701	22352.0	Mm.268000	NM_011701	ENSMUSG00000026728	Vim	-	vimentin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-99297333-4	chr5	99297229	99297429	+	927.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_030692)	TTS (NR_030692)	-44402.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	-0.654203750232095	-0.906716396103307	-0.345559305711495	-0.917224069321165	-0.920361906015164	-0.904044330727832	-0.914362853589523	-0.916835673576791	-2.96158595613085	0.328953899946767	1
Merged-chr3-135429157-2	chr3	135429057	135429257	+	787.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-5724.0	NM_025902	67006.0	Mm.269993	NM_025902	ENSMUSG00000028165	Cisd2	1500009M05Rik|1500026J14Rik|1500031D15Rik|AI848398|B630006A20Rik|Miner1|Naf-1|Noxp70|Zcd2	CDGSH iron sulfur domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-53529777-4	chr19	53529650	53529850	+	977.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085390, intron 1 of 3)	intron (NM_001085390, intron 1 of 3)	432.0	NM_001085390	240672.0	Mm.482424	NM_001085390	ENSMUSG00000034765	Dusp5	Gm337	dual specificity phosphatase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-49367742-4	chr6	49367635	49367835	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001172216)	promoter-TSS (NM_001172216)	-4.0	NM_001172216	231946.0	Mm.35199	NM_172727	ENSMUSG00000047115	Fam221a	D330028D13Rik	family with sequence similarity 221, member A	protein-coding	4.20862027640388	5.13404620492099	5.05153892109511	4.89646846267323	3.4168940704511	4.32595173558152	4.42218260174075	3.30417886605464	-1.16755677983549	0.00784790980781302	0.0918147566891454
Merged-chr13-112197011-2	chr13	112196911	112197111	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-91440.0	NM_001168403	77318.0	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-10765056-4	chr17	10764969	10765169	+	987.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027032, intron 2 of 4)	Lx7|LINE|L1	75122.0	NM_027032	69310.0	Mm.18889	NM_027032	ENSMUSG00000037196	Pacrg	1700008H23Rik	PARK2 co-regulated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-127132583-2	chr2	127132483	127132683	+	650.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144818, intron 1 of 17)	intron (NM_144818, intron 1 of 17)	1371.0	NM_144818	215387.0	Mm.29786	NM_144818	ENSMUSG00000034906	Ncaph	A730011O11Rik|Brrn1|CAP-H|HCAP-H|mCAP-H	non-SMC condensin I complex, subunit H	protein-coding	-0.623764677010023	0.414786613617209	-0.613346344035614	-0.617237239714038	-0.622788180854246	-0.376861492306096	-0.612239599835124	-0.616555314441361	-2.74930948094157	0.306902006299549	1
Merged-chr15-97881576-1	chr15	97881476	97881676	+	828.0	f0_balb.idr	intron (NM_009504, intron 3 of 9)	intron (NM_009504, intron 3 of 9)	26720.0	NM_009504	22337.0	Mm.245084	NM_009504	ENSMUSG00000022479	Vdr	Nr1i1	vitamin D (1,25-dihydroxyvitamin D3) receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-38025076-4	chr7	38024992	38025192	+	885.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER20B|LTR|ERVK	-5540.0	NM_011274	19777.0	Mm.387220	NM_011274	ENSMUSG00000030421	Uri1	C80913|NNX3|Rmp	URI1, prefoldin-like chaperone	protein-coding	3.79774878408791	3.55915503670955	4.13394614046154	3.78998239958081	5.52055148547483	4.78335545813848	5.65293956504327	5.76033392167927	2.0165610079275	6.7659899752465e-08	6.34205841585996e-06
Merged-chr17-84116400-3	chr17	84116303	84116503	+	934.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37743.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-128608443-1	chr4	128608343	128608543	+	786.0	f1_balb.idr	intron (NM_177758, intron 1 of 7)	intron (NM_177758, intron 1 of 7)	1655.0	NM_177758	269585.0	Mm.153291	NM_177758	ENSMUSG00000061894	Zscan20	C130001F22|Zfp31|Zkscan20	zinc finger and SCAN domains 20	protein-coding	0.167319631685326	0.84836744035528	0.182849657519959	0.177041349788674	0.873284602241371	0.860199332872028	0.184503761284378	0.178058568679926	1.08826531652845	0.601575450353789	1
Merged-chr18-38602857-3	chr18	38602826	38603026	+	696.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1658.0	NM_011898	24066.0	Mm.42038	NM_011898	ENSMUSG00000024427	Spry4	A030006O18Rik|sprouty4	sprouty RTK signaling antagonist 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-98805452-3	chr15	98805336	98805536	+	864.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001013741, exon 2 of 2)	exon (NM_001013741, exon 2 of 2)	2489.0	NM_001013741	13199.0	Mm.390810	NM_001013741	ENSMUSG00000059213	Ddn	Gm748	dendrin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-113637852-3	chr7	113637731	113637931	+	899.7333369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-72844.0	NR_126544	69295.0	Mm.396150	NR_126544	ENSMUSG00000084984	Far1os	1700006P19Rik	fatty acyl CoA reductase 1, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-58536236-4	chr18	58536114	58536314	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20026.0	NM_001081072	225579.0	Mm.258517	NM_001081072	ENSMUSG00000024600	Slc27a6	4732438L20Rik|FACVL2|FATP6|VLCS-H1	solute carrier family 27 (fatty acid transporter), member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-155442756-3	chr2	155442653	155442853	+	658.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1970.0	NM_019825	56406.0	Mm.27592	NM_019825	ENSMUSG00000038369	Ncoa6	AIB3|ASC-2|ASC2|NRC|Ncoa7|PRIP|RAP250|mKIAA0181	nuclear receptor coactivator 6	protein-coding	2.55812269615364	1.63533864414325	2.09452719094442	1.9003884535476	1.95503690784192	2.53928087529737	2.1102481591153	2.38122850949204	0.390228541504435	0.662775918107541	0.991189812047649
Merged-chr2-30967005-4	chr2	30966906	30967106	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144884, intron 2 of 4)	intron (NM_144884, intron 2 of 4)	912.0	NM_144884	30931.0	Mm.154994	NM_144884	ENSMUSG00000026849	Tor1a	DQ2|Dyt1|torsinA	torsin family 1, member A (torsin A)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-47963540-2	chr6	47963440	47963640	+	597.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_178898, exon 5 of 5)	exon (NM_178898, exon 5 of 5)	10150.0	NM_178898	101197.0	Mm.241063	NM_178898	ENSMUSG00000045466	Zfp956	AI894139	zinc finger protein 956	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-3805872-3	chr13	3805771	3805971	+	824.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1553.0	NM_027416	70405.0	Mm.20079	NM_027416	ENSMUSG00000063130	Calml3	2310068O22Rik|AI326174	calmodulin-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-40217986-4	chr4	40217882	40218082	+	796.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172689, intron 10 of 17)	B2_Mm1a|SINE|B2	21843.0	NM_172689	230073.0	Mm.86382	NM_172689	ENSMUSG00000040296	Ddx58	6430573D20Rik|C330021E21|RIG-I|RLR-1	DEAD (Asp-Glu-Ala-Asp) box polypeptide 58	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-108828457-4	chr6	108828339	108828539	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138677)	promoter-TSS (NM_138677)	-202.0	NM_138677	192193.0	Mm.21596	NM_138677	ENSMUSG00000030104	Edem1	A130059K23Rik|EDEM|mKIAA0212	ER degradation enhancer, mannosidase alpha-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-16897412-3	chr12	16897313	16897513	+	927.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009072, intron 1 of 32)	MTC|LTR|ERVL-MaLR	2435.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	2.80352624681168	2.78202739922898	2.93348924129587	2.85085472764658	2.82696916242658	3.36035329039728	3.62276318679329	3.45410898267591	0.874699094423897	0.15365414539522	0.608506494422839
Merged-chr8-124278076-1	chr8	124277976	124278176	+	778.333313	f0_balb.idr	intron (NM_139272, intron 1 of 15)	intron (NM_139272, intron 1 of 15)	46682.0	NM_139272	108148.0	Mm.33808	NM_139272	ENSMUSG00000089704	Galnt2	AI480629	polypeptide N-acetylgalactosaminyltransferase 2	protein-coding	1.14405861346393	0.841085754521063	0.822955766093682	1.61437388310661	1.153898098284	1.09824582995803	1.68544056927251	2.27231035691313	1.68601983163167	0.197604503714159	0.679718702856214
Merged-chr2-11288622-4	chr2	11288525	11288725	+	970.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008859, intron 15 of 17)	intron (NM_008859, intron 15 of 17)	-50864.0	NR_040369	100503147.0	Mm.91961	NR_040369	ENSMUSG00000086006	Gm13293	-	predicted gene 13293	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-29166407-4	chr6	29166307	29166507	+	979.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1683.0	NM_133925	68272.0	Mm.40802	NM_026650	ENSMUSG00000029701	Rbm28	2810480G15Rik|AI503051	RNA binding motif protein 28	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-49619313-2	chr2	49619213	49619413	+	897.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008449)	promoter-TSS (NM_008449)	-1.0	NM_008449	16574.0	Mm.256342	NM_008449	ENSMUSG00000026764	Kif5c	KINN|Khc|NKHC|NKHC2	kinesin family member 5C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-144205384-6	chr3	144205300	144205500	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010723)	promoter-TSS (NM_010723)	-145.0	NM_010723	16911.0	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-35664765-2	chr18	35664665	35664865	+	922.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER21A|LTR|ERV1	-2579.0	NM_029485	71242.0	Mm.151498	NM_027733	ENSMUSG00000024352	Spata24	2700012K08Rik|4930583E11Rik|5133400G04Rik|AU016220|TIPT|TIPT2	spermatogenesis associated 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-61898561-2	chr9	61898461	61898661	+	682.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15949.0	NM_018853	56040.0	Mm.3158	NM_018853	ENSMUSG00000007892	Rplp1	2410042H16Rik|Arpp1|C430017H15Rik	ribosomal protein, large, P1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-11118679-4	chr19	11118574	11118774	+	895.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027058, intron 1 of 6)	intron (NM_027058, intron 1 of 6)	12204.0	NM_027058	69369.0	Mm.391200	NM_027058	ENSMUSG00000024729	1700017D01Rik	-	RIKEN cDNA 1700017D01 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-43615260-2	chr19	43615169	43615369	+	603.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008699, exon 2 of 2)	3' UTR (NM_008699, exon 2 of 2)	2944.0	NM_008699	18089.0	Mm.56994	NM_008699	ENSMUSG00000044220	Nkx2-3	Nkx-2.3|Nkx2.3|tinman	NK2 homeobox 3	protein-coding	-0.30064788206941	-0.285465153724102	-0.290423949423749	-0.294259847635106	0.381493879975128	-0.284349348846879	0.421225272082428	-0.29358908084969	3.83356371475769	0.128235031491392	1
Merged-chr1-58740508-3	chr1	58740364	58740564	+	804.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355056, intron 6 of 8)	intron (NM_001355056, intron 6 of 8)	9912.0	NM_001293805	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-36853374-3	chr3	36853292	36853492	+	972.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_A|LINE|L1	-9714.0	NM_172679	229227.0	Mm.207907	NM_172679	ENSMUSG00000037270	4932438A13Rik	4732443H21|B830039D19Rik|D630029K19Rik|FSA|Kiaa1109|Tweek	RIKEN cDNA 4932438A13 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-55479233-4	chr13	55479121	55479321	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177371, intron 8 of 14)	intron (NM_001177371, intron 8 of 14)	-1445.0	NR_105909	102465569.0		NR_105909	ENSMUSG00000098341	Mir6944	Gm27710|mmu-mir-6944	microRNA 6944	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-31303597-2	chr17	31303497	31303697	+	653.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001242427, intron 2 of 19)	intron (NM_001242427, intron 2 of 19)	7373.0	NM_001242427	224674.0	Mm.311395	NM_153062	ENSMUSG00000024036	Slc37a1	G3PP	solute carrier family 37 (glycerol-3-phosphate transporter), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80942187-2	chr10	80942087	80942287	+	711.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12096.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124767957-2	chr6	124767857	124768057	+	753.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013509, intron 2 of 11)	intron (NM_013509, intron 2 of 11)	1716.0	NM_001302642	13807.0	Mm.3913	NM_013509	ENSMUSG00000004267	Eno2	AI837106|D6Ertd375e|Eno-2|NSE	enolase 2, gamma neuronal	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36106576-2	chr1	36106476	36106676	+	550.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_015818)	TTS (NM_015818)	37737.0	NR_105862	102465540.0		NR_105862	ENSMUSG00000098752	Mir6897	Gm27652|mmu-mir-6897	microRNA 6897	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-68443921-2	chr1	68443803	68444003	+	597.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010154, intron 3 of 26)	Lx9|LINE|L1	664156.0	NM_010154	13869.0	Mm.442420	NM_010154	ENSMUSG00000062209	Erbb4	Her4|c-erbB-4	erb-b2 receptor tyrosine kinase 4	protein-coding	-0.413270832553205	0.248879758316469	-0.403519686790488	-0.4071766335812	-0.41236239857827	0.260274020124072	-0.402476173372258	-0.406537021983025	0.0394809277679939	0.98817139586833	1
Merged-chr11-117814103-2	chr11	117814003	117814203	+	729.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009304, exon 4 of 4)	3' UTR (NM_009304, exon 4 of 4)	4436.0	NM_009304	20973.0	Mm.468228	NM_009304	ENSMUSG00000048277	Syngr2	Clast2|cellugyrin	synaptogyrin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-33646970-4	chr8	33646867	33647067	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-4991.0	NM_178648	108159.0	Mm.29301	NM_178648	ENSMUSG00000052906	Ubxn8	D0H8S2298E|Rep-8|Rep8h|Ubxd6	UBX domain protein 8	protein-coding	3.3443302169013	3.39617701085855	2.47545547849457	2.85134357481822	3.63204296521749	4.21995011353314	3.79438594757143	3.9218060617953	1.27779600564229	0.0197291983137082	0.177888968963831
Merged-chr16-20372277-4	chr16	20372176	20372376	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013790, intron 16 of 29)	intron (NM_013790, intron 16 of 29)	-46872.0	NM_183158	224044.0	Mm.276400	NM_183158	ENSMUSG00000022818	Cyp2ab1	EG224044|F730023N20	cytochrome P450, family 2, subfamily ab, polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-45326791-2	chr13	45326691	45326891	+	552.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-62951.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35127049-4	chr17	35126958	35127158	+	965.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_033477, exon 3 of 3)	5' UTR (NM_033477, exon 3 of 3)	656.0	NM_033477	114585.0	Mm.42070	NM_033477	ENSMUSG00000043311	D17H6S53E	G4|NG34	DNA segment, Chr 17, human D6S53E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132074712-4	chr4	132074587	132074787	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001128607, intron 1 of 17)	CpG	626.0	NM_001128607	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-37592548-4	chr6	37592450	37592650	+	859.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	62377.0	NM_145364	208665.0	Mm.262635	NM_145364	ENSMUSG00000038641	Akr1d1	-	aldo-keto reductase family 1, member D1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81286797-2	chr10	81286697	81286897	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001282095, intron 1 of 20)	intron (NM_001282095, intron 1 of 20)	-1016.0	NM_001282096	27375.0	Mm.27984	NM_013769	ENSMUSG00000034917	Tjp3	-	tight junction protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70988183-3	chr14	70988100	70988300	+	782.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	98093.0	NM_001302094	14586.0	Mm.32619	NM_008115	ENSMUSG00000022103	Gfra2	-	glial cell line derived neurotrophic factor family receptor alpha 2	protein-coding	0.223835284600622	-0.0301164746747571	0.144158951508868	-0.0398204425644547	-0.0458042450629531	0.336371455220774	0.748185277964678	-0.039081348240391	1.70998239165645	0.424512711545034	1
Merged-chr12-52006486-4	chr12	52006422	52006622	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029545)	promoter-TSS (NM_029545)	-15.0	NM_001347404	328092.0	Mm.2821	NM_029545	ENSMUSG00000020956	Dtd2	4930578F06Rik|6530401N04Rik|B830049N13Rik	D-tyrosyl-tRNA deacylase 2	protein-coding	4.80757552765289	5.2479646645247	4.59377976292526	3.75993865590244	5.30555585804536	5.20932507488172	5.19688945615184	4.80537448800179	0.536911783189651	0.146212459455757	0.596296396331935
Merged-chr3-28030970-2	chr3	28030870	28031070	+	556.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008875, intron 5 of 25)	MTE2b|LTR|ERVL-MaLR	46799.0	NM_008875	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-53313943-2	chr18	53313843	53314043	+	762.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_029394, intron 1 of 6)	intron (NM_029394, intron 1 of 6)	68281.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-126552143-2	chr6	126552043	126552243	+	656.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16588.0	NM_145983	16493.0	Mm.222831	NM_145983	ENSMUSG00000045534	Kcna5	Kv1.5	potassium voltage-gated channel, shaker-related subfamily, member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-6794604-4	chr17	6794511	6794711	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11831.0	NM_009510	22350.0	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-36129334-3	chr17	36129288	36129488	+	619.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177467)	promoter-TSS (NM_001177467)	37.0	NM_001177467	630294.0	Mm.484916	NM_001177467	ENSMUSG00000092243	Gm7030	EG630294|H2-t9	predicted gene 7030	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-66953332-3	chr14	66953234	66953434	+	742.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42126.0	NM_175498	239157.0	Mm.44358	NM_175498	ENSMUSG00000046204	Pnma2	A830049P17Rik|mKIAA0883	paraneoplastic antigen MA2	protein-coding	4.18306416686061	4.21680090671271	4.25659122933632	4.34330383248862	3.37590032007596	3.60249318849667	4.48850650256388	3.86170325132352	-0.480342843168228	0.289503016320557	0.794962737980023
Merged-chr11-98813511-3	chr11	98813428	98813628	+	976.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138660, intron 3 of 13)	intron (NM_138660, intron 3 of 13)	-3439.0	NR_033551	100037262.0	Mm.442062	NR_033551	ENSMUSG00000075576	Gm12359	-	predicted gene 12359	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-87539774-3	chr17	87539676	87539876	+	778.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR25B|LTR|ERVK	-92841.0	NM_007589	12314.0	Mm.329243	NM_007589	ENSMUSG00000036438	Calm2	1500001E21Rik|AL024017|Cam2|CamC	calmodulin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41895135-2	chr19	41895042	41895242	+	674.099976	f1_balb.idr|f1_c57bl6.idr	intron (NM_199447, intron 2 of 33)	intron (NM_199447, intron 2 of 33)	1011.0	NM_199447	107094.0	Mm.276044	NM_199447	ENSMUSG00000035049	Rrp12	AA408556|AA536972|mKIAA0690	ribosomal RNA processing 12 homolog (S. cerevisiae)	protein-coding	1.06980582514689	1.15131093369242	2.01316888878483	1.9532327179537	1.74733388685505	2.43225666661446	2.43353382845289	1.6976191095564	1.35305907701161	0.219731401230339	0.710826235364411
Merged-chr18-80209092-2	chr18	80208992	80209192	+	712.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025299, intron 2 of 3)	intron (NM_025299, intron 2 of 3)	2225.0	NM_001042408	27366.0	Mm.172411	NM_025299	ENSMUSG00000057130	Txnl4a	D18Wsu98e|Dim1|Txnl4|U5-15kD|U5-15kDa	thioredoxin-like 4A	protein-coding	-0.429165910719733	-0.873612895455471	-0.880042310359133	-0.882147047040279	-0.515285789036623	-0.870994549976101	-0.879439369138014	-0.881779851595733	-0.36230783815378	0.907723332250447	1
Merged-chr18-11840055-3	chr18	11839899	11840099	+	874.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045421)	promoter-TSS (NR_045421)	439.0	NR_035447	100316686.0		NR_035447	ENSMUSG00000084565	Mir1901	Mirn1901|mmu-mir-1901	microRNA 1901	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-11298948-2	chr17	11298848	11299048	+	549.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016694, intron 3 of 11)	L1_Mus1|LINE|L1	458589.0	NM_016694	50873.0	Mm.311110	NM_016694	ENSMUSG00000023826	Park2	PRKN	Parkinson disease (autosomal recessive, juvenile) 2, parkin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16465267-2	chr7	16465167	16465367	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008718, intron 4 of 11)	intron (NM_008718, intron 4 of 11)	11513.0	NM_008718	18142.0	Mm.145821	NM_008718	ENSMUSG00000001988	Npas1	MOP5|bHLHe11	neuronal PAS domain protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-34910823-6	chr6	34910635	34910835	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001013366)	promoter-TSS (NM_001013366)	96.0	NM_001013366	101240.0	Mm.152120	NM_001013366	ENSMUSG00000058486	Wdr91	9530020G05Rik|AI987683|AU018665	WD repeat domain 91	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-35267063-2	chr9	35266963	35267163	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028040)	promoter-TSS (NM_028040)	742.0	NM_175411	109229.0	Mm.24197	NM_175411	ENSMUSG00000050471	Fam118b	2310022O21Rik|2700018L24Rik|C030004A17Rik|Ppp4r1l	family with sequence similarity 118, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-28517418-4	chr2	28517323	28517523	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009058, intron 1 of 17)	intron (NM_009058, intron 1 of 17)	4256.0	NM_001145834	19730.0	Mm.5236	NM_009058	ENSMUSG00000026821	Ralgds	Gnds|Rgds|mKIAA1308	ral guanine nucleotide dissociation stimulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84042283-4	chr8	84042178	84042378	+	967.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_173184)	TTS (NM_173184)	297.0	NM_016671	50931.0	Mm.38386	NM_016671	ENSMUSG00000005465	Il27ra	CRL1|IL-27R|Tccr|WSX-1|Wsx1|zcytor1	interleukin 27 receptor, alpha	protein-coding	4.267639422837	4.60267643615844	4.31968570791571	3.57053587704091	4.12938200306823	1.94463076434494	4.00402220124548	4.17555983120167	-0.571339589146632	0.310937477044125	0.812040423094022
Merged-chr13-52024944-4	chr13	52024842	52025042	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-71799.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-34860157-2	chr6	34860057	34860257	+	569.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001289657)	TTS (NM_001289657)	-2989.0	NM_197986	68487.0	Mm.248440	NM_197986	ENSMUSG00000057137	Tmem140	1110007F12Rik	transmembrane protein 140	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135078301-4	chr5	135078218	135078418	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199677)	promoter-TSS (NM_001199677)	-52.0	NM_001199677	194309.0	Mm.44356	NM_177574	ENSMUSG00000043614	Vps37d	Wbscr24	vacuolar protein sorting 37D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-96590956-2	chr15	96590856	96591056	+	623.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166456, intron 5 of 15)	Lx8|LINE|L1	51006.0	NM_134086	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67126464-4	chr10	67126377	67126577	+	938.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207221)	promoter-TSS (NM_207221)	-781.0	NM_207221	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-52404861-1	chr3	52404761	52404961	+	638.0	f0_balb.idr	Intergenic	Intergenic	-112103.0	NR_153344	102631981.0	Mm.394225	NR_153344		Gm30173	-	predicted gene, 30173	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123019501-3	chr5	123019397	123019597	+	780.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175423, intron 1 of 1)	intron (NM_175423, intron 1 of 1)	4423.0	NM_175423	109305.0	Mm.218582	NM_175423	ENSMUSG00000049686	Orai1	D730049H07Rik|Tmem142a|orai-1	ORAI calcium release-activated calcium modulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-25479984-2	chr9	25479884	25480084	+	845.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1613.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-57259934-4	chr9	57259823	57260023	+	986.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028820, intron 1 of 2)	intron (NM_028820, intron 1 of 2)	2676.0	NM_028820	74211.0	Mm.428905	NM_028820	ENSMUSG00000032300	1700017B05Rik	AA682102|D9Ertd278e	RIKEN cDNA 1700017B05 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-148805912-4	chr3	148805804	148806004	+	997.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	148731.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-45565008-2	chr17	45564908	45565108	+	999.833374	f1_balb.idr|f1_c57bl6.idr	exon (NM_001357105, exon 3 of 4)	exon (NM_001357105, exon 3 of 4)	1072.0	NM_001357105	73836.0	Mm.289716	NM_028662	ENSMUSG00000037089	Slc35b2	1110003M08Rik|AA407792|AI842275|PAPST1|Slc35b1	solute carrier family 35, member B2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132091639-2	chr4	132091539	132091739	+	564.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16326.0	NM_001128607	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-156720129-4	chr2	156720030	156720230	+	961.56665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001042488)	promoter-TSS (NM_001042488)	779.0	NR_040505	74846.0	Mm.443946	NR_040505	ENSMUSG00000086638	4930405A21Rik	-	RIKEN cDNA 4930405A21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27426547-3	chr2	27426478	27426678	+	946.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_133905, exon 1 of 30)	non-coding (NR_133905, exon 1 of 30)	1030.0	NR_133905	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-6155663-4	chr7	6155553	6155753	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013012, intron 1 of 2)	CpG	318.0	NM_001013012	67109.0	Mm.3254	NM_001013012	ENSMUSG00000046792	Zfp787	2210018M03Rik|Znf787	zinc finger protein 787	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-59767125-4	chr9	59767054	59767254	+	736.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173018, intron 1 of 43)	intron (NM_173018, intron 1 of 43)	15980.0	NM_173018	270163.0	Mm.249545	NM_173018	ENSMUSG00000039585	Myo9a	4732465J09Rik|C130068I12Rik|C230003M11	myosin IXa	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-81519786-2	chr17	81519686	81519886	+	853.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 2 of 8)	Lx6|LINE|L1	218601.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101174145-6	chr11	101174062	101174262	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007721, exon 2 of 2)	exon (NM_007721, exon 2 of 2)	1281.0	NM_007721	12777.0	Mm.8021	NM_007721	ENSMUSG00000044052	Ccr10	C-C CKR-10|CC-CKR-10|CCR-10|Cmkbr9|Gpr2	chemokine (C-C motif) receptor 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-87498351-4	chr3	87498277	87498477	+	726.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113238, intron 11 of 11)	Lx8|LINE|L1	-27201.0	NM_001083318	27049.0	Mm.219460	NM_012051	ENSMUSG00000003382	Etv3	AI414410|METS|Pe1	ets variant 3	protein-coding	2.24090780564831	2.63003839183128	2.89231223238564	1.79705307415302	2.25968845510026	2.41077657722184	1.38863595277013	2.74916734366451	-0.343464073049438	0.703481164209074	0.998431161219273
Merged-chr2-169780131-1	chr2	169780031	169780231	+	600.333313	f0_c57.idr	intron (NM_080455, intron 1 of 1)	intron (NM_080455, intron 1 of 1)	146485.0	NM_080455	228911.0	Mm.315789	NM_080455	ENSMUSG00000047907	Tshz2	2900073F20Rik|B830045G17|Mtsh2|Sdccag33l|Tsh2|Zfp218|mKIAA4248|teashirt2	teashirt zinc finger family member 2	protein-coding	0.274114643655007	0.40146151333961	-0.0722492131744854	-0.075780016197202	0.0573892643573475	0.410595358503723	-0.0712379038305313	-0.075163960484451	-0.431207338037515	0.843137433134871	1
Merged-chr10-102451909-2	chr10	102451809	102452009	+	612.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38509.0	NM_024435	67405.0	Mm.64201	NM_024435	ENSMUSG00000019890	Nts	5033428E16Rik|NMN-125|NN|NT|NT/N|NTS1	neurotensin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-90885573-4	chr16	90885460	90885660	+	959.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027627, intron 4 of 6)	intron (NM_027627, intron 4 of 6)	49289.0	NM_026502	68001.0	Mm.45374	NM_026502	ENSMUSG00000022972	1110004E09Rik	-	RIKEN cDNA 1110004E09 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44073111-2	chr9	44073011	44073211	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016808, intron 1 of 12)	intron (NM_016808, intron 1 of 12)	3682.0	NM_016808	53376.0	Mm.272770	NM_016808	ENSMUSG00000032010	Usp2	B930035K21Rik|Ubp41	ubiquitin specific peptidase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135867875-2	chr5	135867775	135867975	+	581.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021403, intron 11 of 14)	intron (NM_021403, intron 11 of 14)	-20044.0	NM_013560	15507.0	Mm.13849	NM_013560	ENSMUSG00000004951	Hspb1	27kDa|Hsp25	heat shock protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-53254670-4	chr18	53254541	53254741	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029394, intron 1 of 6)	intron (NM_029394, intron 1 of 6)	8979.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-152123580-2	chr4	152123480	152123680	+	595.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_207689, intron 9 of 9)	intron (NM_207689, intron 9 of 9)	5345.0	NM_019585	56226.0	Mm.264215	NM_019585	ENSMUSG00000028943	Espn	je	espin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191270776-2	chr1	191270676	191270876	+	921.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	46322.0	NR_151547	100504360.0	Mm.16927	NM_001033188		D730003I15Rik	AU020850	RIKEN cDNA D730003I15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-85038024-5	chr8	85037851	85038051	+	830.5644530000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122843, intron 1 of 24)	CpG	783.0	NM_001122843	212999.0	Mm.220357	NM_145390	ENSMUSG00000031691	Tnpo2	1110034O24Rik|AA414969|AI464345|AI852433|IPO3|Knpb2b|Kpnb2b|TRN2	transportin 2 (importin 3, karyopherin beta 2b)	protein-coding	1.75981941451611	1.41564469624474	2.79239519071708	1.71351665247668	2.29624202809181	1.14036659007657	2.7462142997416	1.08167406561919	-0.030112317509129	0.978857450785751	0.998431161219273
Merged-chr6-97155793-3	chr6	97155736	97155936	+	798.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081111, intron 16 of 16)	B1_Mus1|SINE|Alu	-6953.0	NM_175313	101351.0	Mm.116802	NM_175313	ENSMUSG00000035245	Eogt	A130022J15Rik|AI447490|AW214473|AW259391|Aer61	EGF domain-specific O-linked N-acetylglucosamine (GlcNAc) transferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-86547092-2	chr3	86546992	86547192	+	944.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_011839, exon 1 of 1)	exon (NM_011839, exon 1 of 1)	1191.0	NM_011839	23937.0	Mm.389466	NM_011839	ENSMUSG00000057777	Mab21l2	-	mab-21-like 2 (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-53902179-2	chr19	53902079	53902279	+	554.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011050, intron 1 of 11)	intron (NM_011050, intron 1 of 11)	-1172.0	NM_001168492	18569.0	Mm.1605	NM_011050	ENSMUSG00000024975	Pdcd4	D19Ucla1|Ma3|Tis	programmed cell death 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-127282570-4	chr3	127282452	127282652	+	900.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001327938, intron 1 of 47)	intron (NM_001327938, intron 1 of 47)	121247.0	NR_105029	100862268.0	Mm.444603	NR_105029	ENSMUSG00000097456	LOC100862268	-	uncharacterized LOC100862268	ncRNA	3.76470958184586	4.70387328511853	2.64678026146648	3.75413536533128	5.65921076418314	4.91980530169512	5.17225149549978	4.5499776008592	1.55784182196256	0.00079650983453398	0.0161065028001214
Merged-chr10-3973814-4	chr10	3973707	3973907	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170785, intron 1 of 27)	CpG	732.0	NM_172308	270685.0	Mm.184752	NM_172308	ENSMUSG00000040675	Mthfd1l	2410004L15Rik|AI647056|Fthfsdc1	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95694040-4	chr3	95693958	95694158	+	970.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6141.0	NM_001301705	229595.0	Mm.490574	NM_144899	ENSMUSG00000015850	Adamtsl4	ADAMTSL-4|Tsrc1	ADAMTS-like 4	protein-coding	2.02590885823731	2.99786474020642	2.82146315009579	2.37558530933458	2.16419533650954	2.1250106754568	2.0569010868929	1.99625530720798	-1.20246800275421	0.145890757697731	0.596091332081597
Merged-chr9-82829264-4	chr9	82829171	82829371	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022986)	promoter-TSS (NM_022986)	-535.0	NM_022986	65099.0	Mm.41415	NM_022986	ENSMUSG00000032251	Irak1bp1	4921528N06Rik|AI851240|Aabp3|Aip70|Simpl	interleukin-1 receptor-associated kinase 1 binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-42270872-4	chr10	42270762	42270962	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019740, intron 2 of 3)	intron (NM_019740, intron 2 of 3)	5880.0	NM_019740	56484.0	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-40877797-3	chr17	40877703	40877903	+	814.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027834, intron 1 of 1)	intron (NM_027834, intron 1 of 1)	2755.0	NM_027834	71583.0	Mm.158733	NM_027834	ENSMUSG00000054951	9130008F23Rik	-	RIKEN cDNA 9130008F23 gene	protein-coding	1.26602046653336	1.59349708897732	2.2680299906273	1.15015871433326	1.10716907814301	1.60629551181993	0.948532895134919	2.13260194400615	-0.322472451340243	0.790232062884944	0.998431161219273
Merged-chr3-108490185-1	chr3	108490085	108490285	+	560.0	f1_balb.idr	intron (NM_001358065, intron 1 of 20)	B2_Mm2|SINE|B2	-44926.0	NM_001204979	20226.0	Mm.28688	NM_011319	ENSMUSG00000068739	Sars	Sars1|Strs|serRS	seryl-aminoacyl-tRNA synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-178023199-4	chr2	178023138	178023338	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177400)	promoter-TSS (NM_001177400)	-46.0	NM_001177400	626848.0	Mm.422604	NM_001177399	ENSMUSG00000074519	Zfp971	Etohi1	zinc finger protein 971	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-122925779-3	chr6	122925677	122925877	+	640.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199311, intron 2 of 5)	intron (NM_199311, intron 2 of 5)	3929.0	NM_199311	269799.0	Mm.297275	NM_199311	ENSMUSG00000049037	Clec4a1	BC049354|Dcir4	C-type lectin domain family 4, member a1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59033142-2	chr15	59033042	59033242	+	744.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144800, intron 3 of 14)	intron (NM_144800, intron 3 of 14)	48884.0	NM_001146180	211401.0	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33177849-4	chr16	33177744	33177944	+	913.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-7227.0	NM_176840	106326.0	Mm.486405	NM_176840	ENSMUSG00000022807	Osbpl11	9430097N02Rik|AI132306|AU019795|ORP-11	oxysterol binding protein-like 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-6578803-2	chr15	6578703	6578903	+	955.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-1044.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-90100931-2	chr9	90100831	90101031	+	865.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039147, intron 5 of 12)	B2_Mm2|SINE|B2	13889.0	NM_001039147	21761.0	Mm.426209	NM_024431	ENSMUSG00000062270	Morf4l1	MORFRG15|MRG15|TEG-189|Tex189|mKIAA4002	mortality factor 4 like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-115644546-3	chr3	115644467	115644667	+	905.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	70488.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134471159-1	chr6	134471059	134471259	+	608.0	f1_c57bl6.idr	intron (NM_008514, intron 12 of 22)	intron (NM_008514, intron 12 of 22)	56731.0	NM_001355686	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	2.92878662477097	3.57782490770044	2.54897738074555	1.49569806266515	2.59405273258096	3.30963613004567	3.11651738349418	2.61511405048169	0.174133827108881	0.82470217982361	0.998431161219273
Merged-chr8-120440637-2	chr8	120440537	120440737	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48229.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-81971158-6	chr12	81971008	81971208	+	995.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018814, intron 19 of 35)	intron (NM_018814, intron 19 of 35)	111078.0	NM_018814	54604.0	Mm.86584	NM_018814	ENSMUSG00000021140	Pcnx	2900024E21Rik|3526401J03Rik|AF096286|AI327143|AI413187|Pcnx1|Pcnxl1	pecanex homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90940379-4	chr2	90940278	90940478	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017368)	promoter-TSS (NM_017368)	-19.0	NM_198683	13046.0	Mm.29495	NM_017368	ENSMUSG00000005506	Celf1	1600010O03Rik|AA407467|Brunol2|CUG-BP|CUG-BP1|CUGBP|Cugbp1|D2Wsu101e|HNAB50|NAB50	CUGBP, Elav-like family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-103128821-1	chr11	103128721	103128921	+	542.0	f1_c57bl6.idr	Intergenic	Intergenic	-4518.0	NM_001130516	71059.0	Mm.273871	NM_027658	ENSMUSG00000043372	Hexim2	4933402L21Rik	hexamethylene bis-acetamide inducible 2	protein-coding	-2.18233058068552	-2.15536956715525	-2.16352280018114	-2.04193253143548	-2.18043796738662	-2.15360272754651	-2.16167708693786	-2.16902129354933	-0.683654500252594	0.846597994014493	1
Merged-chr6-97855763-7	chr6	97855665	97855865	+	993.714294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113198, intron 1 of 9)	intron (NM_001113198, intron 1 of 9)	48707.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	2.76661660516668	2.11547074558369	1.65125044426353	2.38845108990405	2.04449940903922	3.26225130509828	2.21747455705091	2.28194864087687	0.526877437011077	0.541582098529603	0.954866069207078
Merged-chr7-74984951-2	chr7	74984851	74985051	+	622.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45260.0	NR_131122	75205.0	Mm.399304	NR_131122	ENSMUSG00000108803	4930533N22Rik	Gm44904	RIKEN cDNA 4930533N22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135242490-4	chr4	135242326	135242526	+	774.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013885, intron 1 of 5)	ORR1F|LTR|ERVL-MaLR	30334.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64743214-2	chr5	64743120	64743320	+	807.5	f0_c57.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-60303.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	3.94468659024724	4.17271188949025	3.15125559968113	2.32449713583929	3.15697524391071	3.19228627764404	1.47409632819522	1.41727279149354	-1.60743050255265	0.231180512715165	0.725747702762793
Merged-chr4-22358764-3	chr4	22358668	22358868	+	932.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172988, intron 1 of 8)	intron (NM_172988, intron 1 of 8)	1225.0	NR_104380	269514.0	Mm.40708	NM_172988	ENSMUSG00000040410	Fbxl4	AI836810|FBL4|FBL5	F-box and leucine-rich repeat protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114747975-4	chr11	114747894	114748094	+	950.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034878, intron 8 of 12)	intron (NM_001034878, intron 8 of 12)	-17395.0	NM_001102615	286942.0	Mm.308713	NM_001102615	ENSMUSG00000010021	Kif19a	Kif19	kinesin family member 19A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-13895576-2	chr3	13895476	13895676	+	608.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357034, intron 2 of 7)	L1_Mus3|LINE|L1	-50729.0	NM_001163329	76897.0	Mm.422625	NM_178631	ENSMUSG00000039717	Ralyl	0710005M24Rik	RALY RNA binding protein-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-41893847-3	chr10	41893724	41893924	+	883.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013370, intron 1 of 9)	intron (NM_001013370, intron 1 of 9)	6385.0	NM_001013370	140742.0	Mm.139418	NM_001013370	ENSMUSG00000038332	Sesn1	1110002G11Rik|AU044290|Pa26|Sest1	sestrin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-31726358-2	chr5	31726258	31726458	+	545.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_181281, intron 2 of 10)	MTB_Mm|LTR|ERVL-MaLR	28308.0	NM_144541	107976.0	Mm.482126	NM_144541	ENSMUSG00000052139	Babam2	6030405P19Rik|AI429776|B830038C02Rik|Bre	BRISC and BRCA1 A complex member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-13398396-2	chr15	13398296	13398496	+	737.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	-224721.0	NM_007666	12563.0	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-32587106-2	chr14	32587006	32587206	+	629.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12302.0	NM_001347590	107751.0	Mm.119274	NM_001001796	ENSMUSG00000041730	Prrxl1	Drg11|Drgx	paired related homeobox protein-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-108936187-1	chr9	108936087	108936287	+	803.0	f0_c57.idr	promoter-TSS (NM_025407)	promoter-TSS (NM_025407)	-461.0	NM_025407	22273.0	Mm.335460	NM_025407	ENSMUSG00000025651	Uqcrc1	1110032G10Rik	ubiquinol-cytochrome c reductase core protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-40953715-2	chr4	40953615	40953815	+	670.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029814, intron 5 of 7)	B3A|SINE|B2	5162.0	NM_029814	76959.0	Mm.212763	NM_029814	ENSMUSG00000028419	Chmp5	2210412K09Rik|AW545668	charged multivesicular body protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-5134334-1	chr15	5134234	5134434	+	641.0	f0_c57.idr	Intergenic	RLTR12B|LTR|ERVK	-9527.0	NM_001013367	105787.0	Mm.207004	NM_001013367	ENSMUSG00000050697	Prkaa1	AI194361|AI450832|AL024255|AMPKalpha1|C130083N04Rik	protein kinase, AMP-activated, alpha 1 catalytic subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-116627994-4	chr8	116627899	116628099	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029441, intron 1 of 6)	intron (NM_029441, intron 1 of 6)	104992.0	NM_029441	75796.0	Mm.159575	NM_029441	ENSMUSG00000031758	Cdyl2	1700029M19Rik|4930453I21Rik|Gm20194	chromodomain protein, Y chromosome-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-10397057-3	chr10	10396933	10397133	+	648.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127353, intron 20 of 36)	intron (NM_001127353, intron 20 of 36)	75281.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-57504488-3	chr9	57504382	57504582	+	881.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_133982, exon 1 of 1)	exon (NM_133982, exon 1 of 1)	380.0	NM_133982	102614.0	Mm.274421	NM_133982	ENSMUSG00000062309	Rpp25	AI851155	ribonuclease P/MRP 25 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5792243-2	chr19	5792143	5792343	+	595.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	3738.0	NR_144621	109146451.0		NR_144621		Mascrna	-	Malat1-associated small cytoplasmic RNA	scRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-115042159-4	chr14	115042053	115042253	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1518.0	NR_029785	723905.0		NR_029785	ENSMUSG00000065508	Mir17	Mirn17|mir-17|mmu-mir-17	microRNA 17	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-98871374-4	chr13	98871151	98871351	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178716, intron 6 of 23)	PB1D9|SINE|Alu	19791.0	NM_001048267	238799.0	Mm.173286	NM_178716	ENSMUSG00000009470	Tnpo1	AU021749|D13Ertd688e|IPO2|Kpnb2|MIP|MIP1|TRN	transportin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-51594959-4	chr11	51594863	51595063	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028398, intron 8 of 12)	intron (NM_028398, intron 8 of 12)	10206.0	NM_028398	72947.0	Mm.256875	NM_028398	ENSMUSG00000020359	Phykpl	2900006B13Rik|Agxt2l2	5-phosphohydroxy-L-lysine phospholyase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-125440745-4	chr5	125440645	125440845	+	956.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029752)	promoter-TSS (NM_029752)	-823.0	NM_001359486	76809.0	Mm.290720	NM_029752	ENSMUSG00000037905	Bri3bp	2410150I18Rik|AI841257|AW742481	Bri3 binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-85793387-4	chr1	85793299	85793499	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133781)	promoter-TSS (NM_133781)	-42.0	NM_133781	12283.0	Mm.26135	NM_133781	ENSMUSG00000036707	Cab39	AA408805|AA960512|C78372|MO25|MO25alpha	calcium binding protein 39	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-122112505-4	chr14	122112376	122112576	+	662.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080556, intron 1 of 16)	intron (NM_080556, intron 1 of 16)	5394.0	NM_080556	68059.0	Mm.275191	NM_080556	ENSMUSG00000025544	Tm9sf2	1500001N15Rik|AA536814|D14Ertd64e|P76	transmembrane 9 superfamily member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-96431904-4	chr13	96431801	96432001	+	912.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042714, intron 9 of 13)	intron (NM_001042714, intron 9 of 13)	39259.0	NM_001042714	271144.0	Mm.470057	NM_001042714	ENSMUSG00000047117	Ankdd1b	9330128J19Rik	ankyrin repeat and death domain containing 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-38769790-4	chr16	38769689	38769889	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001285793)	TTS (NM_001285793)	27530.0	NM_001285793	56375.0	Mm.182377	NM_019804	ENSMUSG00000022793	B4galt4	9130402O08Rik|B4galt-IV|b4Gal-T4|beta4Gal-T4|beta4GalT-IV	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-109357863-4	chr3	109357766	109357966	+	969.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020505, intron 1 of 26)	intron (NM_020505, intron 1 of 26)	17183.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21957463-2	chr9	21957363	21957563	+	679.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_025870, exon 2 of 2)	3' UTR (NM_025870, exon 2 of 2)	-1457.0	NR_132099	100049077.0	Mm.46647	NR_132099		Gm45914	-	predicted gene, 45914	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-117028095-2	chr2	117027995	117028195	+	562.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-92976.0	NM_001277256	114715.0	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-64792764-4	chr14	64792659	64792859	+	941.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081177, intron 37 of 39)	MTC|LTR|ERVL-MaLR	140228.0	NM_001081177	16554.0	Mm.23611	NM_001081177	ENSMUSG00000060012	Kif13b	5330429L19Rik|6030414C01|AI429803|C130021D12Rik|GAKIN	kinesin family member 13B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129914374-3	chr2	129914281	129914481	+	978.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-97959.0	NM_009374	21818.0	Mm.2961	NM_009374	ENSMUSG00000027401	Tgm3	AI893889|TG E|TG(E)|TGE|TGase E|TGase-3|we	transglutaminase 3, E polypeptide	protein-coding	2.5615009525152	3.31779905259003	2.67678612480414	1.93121575107609	2.46727646448526	3.15385519678641	1.768764577055	4.36903051711545	0.996536496194	0.219777498756595	0.710826235364411
Merged-chr4-145246891-4	chr4	145246793	145246993	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011610)	promoter-TSS (NM_011610)	-23.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-20046325-4	chr10	20046232	20046432	+	928.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008580, intron 7 of 29)	intron (NM_008580, intron 7 of 29)	-102588.0	NM_008635	17761.0	Mm.20928	NM_008635	ENSMUSG00000019996	Map7	E-MAP-115|MAP-7|Mtap7|R75000|mshi|mste|ste	microtubule-associated protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-79611113-4	chr11	79611011	79611211	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_003283, intron 2 of 2)	intron (NR_003283, intron 2 of 2)	12052.0	NR_003283	790912.0	Mm.447313	NR_003283	ENSMUSG00000087434	Rab11fip4os1	Gm11202	RAB11 family interacting protein 4 (class II), opposite strand 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-110614871-4	chr7	110614726	110614926	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177324)	promoter-TSS (NM_177324)	94.0	NM_177324	319934.0	Mm.102970	NM_177324	ENSMUSG00000038371	Sbf2	4833411B01Rik|AA414977|AI317167|B430219L04Rik|Mtmr13|mMTMH1	SET binding factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-80261053-2	chr12	80260953	80261153	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346669)	promoter-TSS (NM_001346669)	-672.0	NM_001346669	109711.0	Mm.253564	NM_134156	ENSMUSG00000015143	Actn1	3110023F10Rik|Actn1a	actinin, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88178191-4	chr3	88178085	88178285	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045997)	promoter-TSS (NR_045997)	-400.0	NR_045997	76642.0	Mm.424420	NR_045997	ENSMUSG00000096935	1700113A16Rik	2210408E11Rik|AA408983	RIKEN cDNA 1700113A16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-40842696-2	chr4	40842596	40842796	+	604.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_022305, intron 1 of 5)	(CA)n|Simple_repeat|Simple_repeat	7442.0	NR_039584	100628614.0		NR_039584	ENSMUSG00000096377	Mir5123	mmu-mir-5123|mu-mir-5123	microRNA 5123	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-87440407-4	chr16	87440310	87440510	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016924, intron 1 of 4)	CpG	182.0	NM_016924	53858.0	Mm.162406	NM_016924	ENSMUSG00000041079	Rwdd2b	ORF5	RWD domain containing 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-17774707-2	chr10	17774607	17774807	+	753.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21512.0	NM_138628	378431.0	Mm.283493	NM_138628	ENSMUSG00000039891	Txlnb	2310001N14Rik|Mdp77	taxilin beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132768690-1	chr4	132768590	132768790	+	699.0	f0_balb.idr	exon (NM_011284, exon 2 of 9)	exon (NM_011284, exon 2 of 9)	330.0	NM_011284	19891.0	Mm.2870	NM_011284	ENSMUSG00000028884	Rpa2	AA409079|AI325195|AU020965|RPA34|Rf-A2	replication protein A2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-18927567-4	chr10	18927467	18927667	+	869.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Charlie2b|DNA|hAT-Charlie	82496.0	NM_022032	64058.0	Mm.28209	NM_022032	ENSMUSG00000019851	Perp	1110017A08Rik|KCP1|KRTCAP1|PIGPC1|THW	PERP, TP53 apoptosis effector	protein-coding	3.17626175396365	3.56528139354279	3.87254319326339	3.93518779874212	3.42596574690929	3.89753133642865	2.2861346724622	3.08553757097796	-0.569835639199482	0.336982950933706	0.83703930093451
Merged-chr17-65680302-4	chr17	65680187	65680387	+	884.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133685, intron 5 of 6)	intron (NM_133685, intron 5 of 6)	-38083.0	NM_001146002	213272.0	Mm.255732	NM_153519	ENSMUSG00000050612	Txndc2	AU021712|Sptrx-1|Sptrx1|Trx4	thioredoxin domain containing 2 (spermatozoa)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-66152915-2	chr5	66152815	66153015	+	694.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001127382)	promoter-TSS (NM_001127382)	-961.0	NM_001127382	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117609002-1	chr8	117608902	117609102	+	553.0	f1_balb.idr	intron (NM_172285, intron 25 of 32)	intron (NM_172285, intron 25 of 32)	62545.0	NM_028725	74032.0	Mm.296302	NM_028725	ENSMUSG00000034308	Sdr42e1	4632417N05Rik|AI117603	short chain dehydrogenase/reductase family 42E, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-142478554-4	chr3	142478451	142478651	+	985.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18383.0	NM_153564	229898.0	Mm.459245	NM_153564	ENSMUSG00000105504	Gbp5	5330409J06Rik|Gbp5a	guanylate binding protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-30770716-4	chr10	30770644	30770844	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358842, intron 2 of 14)	intron (NM_001358842, intron 2 of 14)	32582.0	NM_001358841	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-70913589-4	chr12	70913489	70913689	+	903.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24268.0	NM_019785	56444.0	Mm.29317	NM_019785	ENSMUSG00000021076	Actr10	Actr11|Arp11	ARP10 actin-related protein 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-128851860-2	chr6	128851763	128851963	+	713.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001254946, intron 2 of 2)	intron (NM_001254946, intron 2 of 2)	-25548.0	NM_030599	80782.0	Mm.6180	NM_030599	ENSMUSG00000079298	Klrb1b	Klrb1d|Ly55b|Ly55d|NKR-P1B|NKR-P1D|Nkrp1-b|Nkrp1b|Nkrp1d|ly-55b|ly-55d	killer cell lectin-like receptor subfamily B member 1B	protein-coding	0.98048287629695	1.86696498953372	1.92763387381697	1.74362580811386	1.66244306805488	1.54585288203275	1.03934646071475	2.67467251238506	0.579694084369751	0.622682534656593	0.980095992322433
Merged-chr1-33904964-2	chr1	33904864	33905064	+	913.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177235, intron 1 of 6)	intron (NM_177235, intron 1 of 6)	2657.0	NM_177235	320705.0	Mm.336619	NM_177235	ENSMUSG00000042182	Bend6	B230209C24Rik	BEN domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-143466419-4	chr7	143466298	143466498	+	983.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5348.0	NM_001161624	12577.0	Mm.168789	NM_009876	ENSMUSG00000037664	Cdkn1c	AL024410|CDKI|Kip2|p57(kip2)|p57Kip2	cyclin-dependent kinase inhibitor 1C (P57)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-164949569-2	chr2	164949476	164949676	+	777.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_013599, intron 3 of 12)	CpG-8834	1357.0	NM_013599	17395.0	Mm.4406	NM_013599	ENSMUSG00000017737	Mmp9	AW743869|B/MMP9|Clg4b|Gel B|MMP-9|pro-MMP-9	matrix metallopeptidase 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-14781748-2	chr9	14781648	14781848	+	789.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019683, intron 2 of 2)	intron (NM_019683, intron 2 of 2)	2825.0	NM_019683	56503.0	Mm.272618	NM_019683	ENSMUSG00000031931	Ankrd49	AW060934|C86108|Gbif	ankyrin repeat domain 49	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118506749-2	chr11	118506649	118506849	+	544.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001024931, intron 5 of 14)	LTR16C|LTR|ERVL	29917.0	NM_001359368	217364.0	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-15149124-1	chr4	15149024	15149224	+	712.0	f0_balb.idr	promoter-TSS (NM_178617)	promoter-TSS (NM_178617)	7.0	NM_178617	69352.0	Mm.389031	NM_178617	ENSMUSG00000040536	Necab1	1700003H21Rik|Efcbp1|STIP-1	N-terminal EF-hand calcium binding protein 1	protein-coding	0.0186499671356513	-0.246670056098721	-0.251768889651724	-0.255713769491849	0.0254680279160469	0.617428834041538	-0.250642942258798	-0.255023902500052	2.28121165441073	0.341103075870502	1
Merged-chr16-45145340-4	chr16	45145259	45145459	+	913.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028756, intron 5 of 6)	intron (NM_028756, intron 5 of 6)	13314.0	NM_001356453	74102.0	Mm.264984	NM_028756	ENSMUSG00000022664	Slc35a5	1010001J06Rik|AU021179|BB097433|D16Ertd450e|D730043G07Rik	solute carrier family 35, member A5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129811090-4	chr4	129810977	129811177	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9402.0	NM_008974	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-12575178-4	chr13	12575074	12575274	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026184, intron 2 of 15)	intron (NM_026184, intron 2 of 15)	9291.0	NM_026184	67475.0	Mm.358706	NM_026184	ENSMUSG00000057069	Ero1lb	1300013B24Rik|1700065B09Rik|AI447560|Ero1b|ero1-beta	ERO1-like beta (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-29414661-4	chr19	29414551	29414751	+	985.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021396, intron 1 of 5)	intron (NM_021396, intron 1 of 5)	3732.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-23697621-4	chr13	23697531	23697731	+	996.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_178208)	TTS (NM_178208)	827.0	NM_178208	319155.0	Mm.261662	NM_178208	ENSMUSG00000060678	Hist1h4c	-	histone cluster 1, H4c	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-21775673-1	chr15	21775573	21775773	+	551.0	f1_balb.idr	Intergenic	Lx5|LINE|L1	664221.0	NM_001008420	215654.0	Mm.300909	NM_001008420	ENSMUSG00000040452	Cdh12	Cdhb	cadherin 12	protein-coding	0.881277499954218	0.501732598286183	0.492545907402273	0.485402576484627	0.996328346636497	0.71543106368898	1.40823754680767	0.950721153010549	2.52739326238553	0.132700728288416	1
Merged-chr16-4199433-3	chr16	4199335	4199535	+	712.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025432, intron 1 of 30)	intron (NM_001025432, intron 1 of 30)	13969.0	NM_001025432	12914.0	Mm.132238	NM_001025432	ENSMUSG00000022521	Crebbp	AW558298|CBP|CBP/p300|KAT3A|p300/CBP	CREB binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71349024-2	chr8	71348924	71349124	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001142323, exon 22 of 39)	exon (NM_001142323, exon 22 of 39)	-17824.0	NM_001145780	67023.0	Mm.41890	NM_025917	ENSMUSG00000002395	Use1	2010315L10Rik|5730403H22Rik|AV002165|D12|Ed2|Q-snare|p31	unconventional SNARE in the ER 1 homolog (S. cerevisiae)	protein-coding	-1.43172712806865	-1.3992492906874	-1.40907085678131	-1.41713858359971	-0.932192548427885	-1.39712091634321	-1.40684746950024	-1.41569446435649	2.19283191591698	0.528233640655333	1
Merged-chr8-70610280-4	chr8	70610169	70610369	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1955.0	NM_133772	76900.0	Mm.6667	NM_133772	ENSMUSG00000070003	Ssbp4	1210002E11Rik|AW743380|Sspb4	single stranded DNA binding protein 4	protein-coding	7.45116965047111	7.75071740099273	7.21995748691461	7.54211984019932	7.58979635324358	7.37605850074869	7.46051859211064	7.26923946991413	-0.0733772117878061	0.642874933589547	0.982823301118608
Merged-chr7-28335813-2	chr7	28335713	28335913	+	682.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013676, intron 2 of 29)	intron (NM_013676, intron 2 of 29)	2906.0	NM_013676	20924.0	Mm.285906	NM_013676	ENSMUSG00000003435	Supt5	AL033283|AL033321|AU019549|Spt5|Supt5h	suppressor of Ty 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-84715708-4	chr2	84715616	84715816	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144887)	promoter-TSS (NM_144887)	-552.0	NM_144887	228136.0	Mm.288508	NM_144887	ENSMUSG00000034075	Zdhhc5	1110032A17Rik|AI451382|Zisp	zinc finger, DHHC domain containing 5	protein-coding	1.86722717884522	3.08459808296458	1.61552191308695	3.03918834047792	1.24230638903121	3.26269860901822	2.72979419834115	2.15184383751273	-0.0364187054406064	0.969419000861754	0.998431161219273
Merged-chr2-128414876-4	chr2	128414732	128414932	+	824.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028591, intron 1 of 1)	intron (NR_028591, intron 1 of 1)	14519.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-20496810-4	chr16	20496690	20496890	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2027.0	NM_172265	224045.0	Mm.233855	NM_172265	ENSMUSG00000003235	Eif2b5	C81315	eukaryotic translation initiation factor 2B, subunit 5 epsilon	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-143057365-3	chr7	143057297	143057497	+	827.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133655, intron 1 of 7)	intron (NM_133655, intron 1 of 7)	-3711.0	NR_110354	97423.0	Mm.5250	NM_133790	ENSMUSG00000059277	R74862	-	expressed sequence R74862	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-109267566-2	chr4	109267466	109267666	+	766.900024	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD-int|LTR|ERVL-MaLR	-12709.0	NM_007943	13858.0	Mm.318250	NM_007943	ENSMUSG00000028552	Eps15	2410112D09Rik	epidermal growth factor receptor pathway substrate 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-29252900-2	chr2	29252800	29253000	+	564.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029460)	promoter-TSS (NR_029460)	93.0	NR_029460	76220.0	Mm.330108	NR_029460	ENSMUSG00000079499	6530402F18Rik	mKIAA1857	RIKEN cDNA 6530402F18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-123989853-4	chr9	123989749	123989949	+	878.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11441.0	NM_007718	12770.0	Mm.423532	NM_007718	ENSMUSG00000064039	Ccr1l1	Cmkbr1l1	chemokine (C-C motif) receptor 1-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-113743421-4	chr9	113743300	113743500	+	995.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114347, intron 1 of 39)	intron (NM_001114347, intron 1 of 39)	1927.0	NM_001114347	76499.0	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-27332806-4	chr7	27332707	27332907	+	963.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175641, intron 4 of 32)	intron (NM_175641, intron 4 of 32)	841.0	NM_001113549	108075.0	Mm.272251	NM_175641	ENSMUSG00000040488	Ltbp4	2310046A13Rik	latent transforming growth factor beta binding protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129472115-3	chr2	129472015	129472215	+	745.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177653, intron 3 of 6)	intron (NM_177653, intron 3 of 6)	64487.0	NM_177653	228592.0	Mm.452175	NM_177653	ENSMUSG00000043727	F830045P16Rik	Sirpb3	RIKEN cDNA F830045P16 gene	protein-coding	0.887999344200989	1.57412879181779	1.51635403435206	1.60558336464839	2.19622140673908	0.953336951743647	0.933903364250019	2.1845423011322	0.924724452563712	0.484168644824845	0.931207887927275
Merged-chr5-34539309-2	chr5	34539209	34539409	+	615.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_011893, intron 1 of 12)	intron (NM_011893, intron 1 of 12)	-4056.0	NM_001145858	24055.0	Mm.5012	NM_011893	ENSMUSG00000054520	Sh3bp2	3BP2	SH3-domain binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132261051-4	chr4	132260941	132261141	+	895.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122992, intron 1 of 10)	CpG	508.0	NM_020273	56809.0	Mm.103489	NM_020273	ENSMUSG00000028901	Gmeb1	1110050A04Rik|AI256615|AI481278	glucocorticoid modulatory element binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-142079902-4	chr4	142079791	142079991	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145402, intron 1 of 2)	intron (NM_145402, intron 1 of 2)	-4407.0	NR_027137	100038693.0	Mm.402714	NR_027137	ENSMUSG00000073728	Tmem51os1	Gm10565|Tmem51as1	Tmem51 opposite strand 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-137702906-1	chr6	137702806	137703006	+	637.0	f0_balb.idr	Intergenic	Intergenic	-32176.0	NM_011499	20901.0	Mm.22584	NM_011499	ENSMUSG00000030224	Strap	AW557906|C78091|C79202|Unrip	serine/threonine kinase receptor associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-85873624-2	chr15	85873524	85873724	+	570.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013882, intron 7 of 10)	intron (NM_013882, intron 7 of 10)	-5703.0	NM_028063	72026.0	Mm.158211	NM_028063	ENSMUSG00000022386	Trmu	1110005N20Rik|1600025P05Rik|AI314320|Trmt1	tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-130454562-1	chr5	130454462	130454662	+	586.5	f0_balb.idr	intron (NM_021371, intron 1 of 5)	intron (NM_021371, intron 1 of 5)	5770.0	NM_021371	140904.0	Mm.40875	NM_021371	ENSMUSG00000060371	Caln1	9630012C17Rik|Cabp8|MNCb-0849	calneuron 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-139400012-2	chr7	139399912	139400112	+	648.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355162)	promoter-TSS (NM_001355162)	-482.0	NM_001355162	212111.0	Mm.28308	NM_183144	ENSMUSG00000025477	Inpp5a	-	inositol polyphosphate-5-phosphatase A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-14291452-4	chr16	14291359	14291559	+	976.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161775)	promoter-TSS (NM_001161775)	-51.0	NM_013607	17880.0	Mm.250705	NM_013607	ENSMUSG00000018830	Myh11	AV071570|SM1|SM2|smMHC	myosin, heavy polypeptide 11, smooth muscle	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-32479331-4	chr6	32479246	32479446	+	999.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175750, intron 3 of 31)	intron (NM_175750, intron 3 of 31)	-31795.0	NR_040277	319849.0	Mm.440860	NR_040277	ENSMUSG00000086763	Plxna4os1	B230378P21Rik	plexin A4, opposite strand 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-81657681-4	chr13	81657585	81657785	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030257)	promoter-TSS (NM_030257)	-121.0	NM_030257	80289.0	Mm.259969	NM_030257	ENSMUSG00000035840	Lysmd3	1110030H10Rik|BC003322	LysM, putative peptidoglycan-binding, domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-84149035-1	chr17	84148935	84149135	+	728.0	f0_balb.idr	Intergenic	Intergenic	38912.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-99188661-2	chr9	99188561	99188761	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48450.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69516344-2	chr11	69516244	69516444	+	731.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081330, intron 9 of 85)	intron (NM_001081330, intron 9 of 85)	32764.0	NM_001081330	327954.0	Mm.247478	NM_177617	ENSMUSG00000005237	Dnah2	2900022L05Rik|4930564A01|D130094J20|D330014H01Rik|Dnahc2|Dnhd3	dynein, axonemal, heavy chain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-87607825-4	chr1	87607703	87607903	+	725.9940190000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12509.0	NM_001110193	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-80563919-4	chr17	80563809	80564009	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033443)	promoter-TSS (NM_001033443)	-75.0	NM_001033443	381113.0	Mm.329216	NM_001033443	ENSMUSG00000033966	Cdkl4	AU067824|Gm942	cyclin-dependent kinase-like 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71311729-2	chr8	71311668	71311868	+	807.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001142322, intron 2 of 39)	MT2B|LTR|ERVL	39054.0	NM_001142323	17925.0	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	-0.637952393848964	-0.443768445925242	-0.631568449562001	-0.633975811793088	-0.498883247883699	-0.148122440590325	-0.458712694154168	-0.633555895403418	2.20232078549387	0.383631720768156	1
Merged-chr6-122601387-1	chr6	122601287	122601487	+	722.0	f1_balb.idr	intron (NM_001134391, intron 1 of 7)	intron (NM_001134391, intron 1 of 7)	1057.0	NM_031159	11810.0	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	3.82117785436723	2.96459102979808	3.33488537663012	3.78419212836473	3.18443945545448	4.22519049416463	3.45777564226849	4.18022761735215	0.443639559094513	0.41318892350617	0.895168057823587
Merged-chr17-86132696-2	chr17	86132596	86132796	+	883.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030133, intron 4 of 20)	intron (NM_030133, intron 4 of 20)	12479.0	NM_030133	78586.0	Mm.146236	NM_030133	ENSMUSG00000024135	Srbd1	AI461933|C85414|D530025C17Rik	S1 RNA binding domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-151689182-4	chr1	151689071	151689271	+	973.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022018, intron 5 of 13)	intron (NM_022018, intron 5 of 13)	65556.0	NR_151474	102640772.0		NR_151473	ENSMUSG00000100594	2810414N06Rik	-	RIKEN cDNA 2810414N06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-119847785-1	chr4	119847685	119847885	+	551.0	f0_balb.idr	intron (NM_010657, intron 1 of 8)	intron (NM_010657, intron 1 of 8)	33107.0	NM_010657	16656.0	Mm.302758	NM_010657	ENSMUSG00000028634	Hivep3	2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3	human immunodeficiency virus type I enhancer binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-155491278-4	chr4	155491198	155491398	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001160017)	promoter-TSS (NM_001160017)	-63.0	NM_001160017	14688.0	Mm.2344	NM_008142	ENSMUSG00000029064	Gnb1	AA409223|C77571|Gnb-1	guanine nucleotide binding protein (G protein), beta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56138213-2	chr17	56138113	56138313	+	585.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001130456, intron 1 of 16)	intron (NM_001130456, intron 1 of 16)	2130.0	NM_001130456	20359.0	Mm.8029	NM_013662	ENSMUSG00000001227	Sema6b	Sema|Seman|VIb|semaZ	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133213502-2	chr4	133213433	133213633	+	681.599976	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008154)	promoter-TSS (NM_008154)	-997.0	NM_008154	14748.0	Mm.4721	NM_008154	ENSMUSG00000049649	Gpr3	Gpcr20|Gpcr21|Gpcr3	G-protein coupled receptor 3	protein-coding	1.71233234254104	1.250704281953	1.52778431399981	1.71173402794336	1.30435568637637	1.25749338695807	1.53916161191924	1.7207164341323	-0.352300516786578	0.754547651714396	0.998431161219273
Merged-chr3-65943983-1	chr3	65943883	65944083	+	553.0	f0_balb.idr	Intergenic	Intergenic	14266.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	1.76346927447903	1.42728334772394	0.928730466441951	1.76209332299091	1.09832932339441	0.956181282707996	2.59605747389644	1.64765787434409	0.718754610702638	0.562824523023713	0.960362415684079
Merged-chr1-159291095-2	chr1	159291009	159291209	+	663.5	f0_c57.idr|f1_balb.idr	intron (NM_011931, intron 11 of 19)	intron (NM_011931, intron 11 of 19)	-2664.0	NR_144489	100846986.0		NR_144489		Pou5f1-rs1	Gm21053|Oct4P2|Otf-3rs|Otf3-rs1|Otf3a	POU domain, class 5, transcription factor 1, related sequence 1	pseudo	2.18375305839045	2.5831631157354	2.49474500119692	3.2576941470082	1.76714009658355	2.82303740976833	1.69359773371352	2.43600782703949	-0.903442500666685	0.28516450447097	0.789676194332059
Merged-chr18-29411774-2	chr18	29411674	29411874	+	640.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045391, intron 7 of 7)	Lx3_Mus|LINE|L1	-30426.0	NR_045395	78199.0	Mm.243850	NR_045395		4930527G23Rik	-	RIKEN cDNA 4930527G23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89872511-2	chr3	89872411	89872611	+	817.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010559, intron 9 of 9)	intron (NM_010559, intron 9 of 9)	40685.0	NM_001310676	16194.0	Mm.2856	NM_010559	ENSMUSG00000027947	Il6ra	CD126|IL-6R|IL-6R-alpha|IL-6RA|Il6r	interleukin 6 receptor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-41596890-4	chr13	41596805	41597005	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9311.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44685535-2	chr9	44685435	44685635	+	598.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_153537)	TTS (NM_153537)	12302.0	NM_001277847	58866.0	Mm.45380	NM_021481	ENSMUSG00000032098	Treh	2210412M19Rik	trehalase (brush-border membrane glycoprotein)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-84113817-4	chr2	84113721	84113921	+	932.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-172595.0	NM_027964	71861.0	Mm.116957	NM_027964	ENSMUSG00000034552	Zswim2	1700025P14Rik|4933437F18Rik|MEX	zinc finger SWIM-type containing 2	protein-coding	4.73694448412289	5.25283132476113	3.98599778366084	4.59839944589717	5.74345213661148	5.69227691770697	5.42355605487116	5.31010862696554	0.990633947473025	0.00280009021404574	0.0431818539693069
Merged-chr18-14713525-4	chr18	14713437	14713637	+	923.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360823, intron 1 of 5)	intron (NM_001360823, intron 1 of 5)	7386.0	NM_001360823	73677.0	Mm.87277	NM_001163609	ENSMUSG00000036743	Psma8	2410072D24Rik	proteasome (prosome, macropain) subunit, alpha type, 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-62602068-2	chr11	62601968	62602168	+	805.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_030738)	promoter-TSS (NR_030738)	-809.0	NR_030738	69221.0	Mm.270874	NR_030738	ENSMUSG00000086841	2410006H16Rik	-	RIKEN cDNA 2410006H16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-101607972-4	chr14	101607845	101608045	+	730.650024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081278, intron 1 of 18)	CpG	1246.0	NM_001081278	210789.0	Mm.320639	NM_173380	ENSMUSG00000033083	Tbc1d4	5930406J04Rik|A930035N22|AV295684|As160	TBC1 domain family, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115538841-4	chr5	115538735	115538935	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011223, intron 1 of 10)	intron (NM_011223, intron 1 of 10)	-20632.0	NM_007475	11837.0	Mm.5286	NM_007475	ENSMUSG00000067274	Rplp0	36B4|Arbp|L10E	ribosomal protein, large, P0	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-13441119-5	chr17	13441121	13441321	+	917.55835	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-80235.0	NR_030763	272667.0	Mm.444718	NR_030763	ENSMUSG00000079711	Smok4a	4930513D10Rik|Smok2c	sperm motility kinase 4A	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-38659787-2	chr15	38659687	38659887	+	644.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE-int|LTR|ERVL-MaLR	-2117.0	NM_025494	66335.0	Mm.276618	NM_025494	ENSMUSG00000022295	Atp6v1c1	1700025B18Rik|U13839	ATPase, H+ transporting, lysosomal V1 subunit C1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55803302-4	chr19	55803187	55803387	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001331146, intron 4 of 14)	intron (NM_001331146, intron 4 of 14)	61477.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	3.13363001807662	3.70242997448032	2.96883036259176	4.18450809781497	3.32690401856974	3.10296189473896	3.52352290477106	4.44634225271397	0.187914196236854	0.74799888924055	0.998431161219273
Merged-chr2-117299113-4	chr2	117299031	117299231	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011246, intron 5 of 16)	intron (NM_011246, intron 5 of 16)	43746.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-24886055-3	chr7	24885952	24886152	+	888.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360125, intron 3 of 5)	intron (NM_001360125, intron 3 of 5)	1139.0	NM_001360115	20085.0	Mm.300281	NM_023133	ENSMUSG00000040952	Rps19	Dsk3	ribosomal protein S19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-118105115-1	chr10	118105015	118105215	+	542.0	f1_balb.idr	Intergenic	Intergenic	-36672.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-17837397-2	chr17	17837297	17837497	+	781.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162909, intron 4 of 8)	intron (NM_001162909, intron 4 of 8)	6422.0	NM_001162909	75202.0	Mm.227456	NM_029205	ENSMUSG00000080316	Spaca6	4930546H06Rik|9530079D04Rik|B230206P06Rik|Ncrna00085|SPACA6A|let-7e|mir-125a|mir-99b	sperm acrosome associated 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115766072-3	chr11	115765998	115766198	+	820.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028014, intron 1 of 31)	intron (NM_028014, intron 1 of 31)	665.0	NM_028014	71947.0	Mm.23168	NM_028014	ENSMUSG00000020747	Tmem94	2310067B10Rik|Kiaa0195|mKIAA0195	transmembrane protein 94	protein-coding	-1.84354474832578	-1.81325489144778	-1.53416061964661	-1.82993901100912	-1.8414184563789	-1.81126990231468	-1.82034119297928	-1.82859217979378	-1.52252619601533	0.665276690233728	1
Merged-chr1-177521297-3	chr1	177521198	177521398	+	778.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	75477.0	NM_013915	30928.0	Mm.330700	NM_013915	ENSMUSG00000063659	Zbtb18	RP58|Zfp238|Znf238.|zfp-238	zinc finger and BTB domain containing 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-33073164-4	chr4	33073059	33073259	+	993.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008076, intron 2 of 8)	B2_Mm2|SINE|B2	10047.0	NM_008076	14409.0	Mm.6227	NM_008076	ENSMUSG00000023267	Gabrr2	-	gamma-aminobutyric acid (GABA) C receptor, subunit rho 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101378078-4	chr7	101377980	101378180	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001040112)	promoter-TSS (NM_001040112)	-42.0	NM_001040112	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-107062873-3	chr3	107062788	107062988	+	984.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23384.0	NR_033498	229694.0	Mm.347584	NM_173787	ENSMUSG00000056145	AI504432	A230102G19	expressed sequence AI504432	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4150542-2	chr19	4150442	4150642	+	653.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_011778, exon 5 of 11)	exon (NM_011778, exon 5 of 11)	1879.0	NM_011778	23789.0	Mm.276859	NM_011778	ENSMUSG00000024835	Coro1b	-	coronin, actin binding protein 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-98947397-1	chr13	98947297	98947497	+	792.0	f0_balb.idr	Intergenic	Intergenic	-21013.0	NM_178716	238799.0	Mm.173286	NM_178716	ENSMUSG00000009470	Tnpo1	AU021749|D13Ertd688e|IPO2|Kpnb2|MIP|MIP1|TRN	transportin 1	protein-coding	0.67333064903795	0.624601532641788	0.444053122055465	0.439606701221459	0.783188332151527	0.911420543278096	0.608004910260922	1.02103019334291	2.09346366099219	0.211255841457001	1
Merged-chr11-104231332-4	chr11	104231230	104231430	+	990.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010838)	promoter-TSS (NM_010838)	-106.0	NM_001038609	17762.0	Mm.1287	NM_010838	ENSMUSG00000018411	Mapt	AI413597|AW045860|Mtapt|Tau	microtubule-associated protein tau	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-29768024-2	chr7	29767924	29768124	+	905.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023750)	promoter-TSS (NM_023750)	-528.0	NM_023750	74352.0	Mm.251083	NM_023750	ENSMUSG00000046185	Zfp84	2210410P13Rik|4633401C23Rik|AI415447|BB081605|C86188|KRAB18|Zfp69	zinc finger protein 84	protein-coding	1.51016699919739	1.69279311981846	1.06210136390544	1.72161451282378	1.64572965124833	1.70548061034569	2.44596769424124	1.44488084136782	1.08567668651311	0.32517749802728	0.827753809334789
Merged-chr15-98729111-2	chr15	98729011	98729211	+	931.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024169)	promoter-TSS (NM_024169)	-913.0	NM_024169	66120.0	Mm.30729	NM_024169	ENSMUSG00000003355	Fkbp11	1110002O23Rik|FKBP-11	FK506 binding protein 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-95881592-2	chr13	95881499	95881699	+	679.666626	f0_balb.idr|f1_balb.idr	intron (NM_027711, intron 1 of 35)	intron (NM_027711, intron 1 of 35)	10323.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	2.65469113780946	2.09123368180245	1.50294551427339	2.90154961429337	3.38599802926339	3.71862407600344	2.55053649609157	3.09029069539293	1.54049859013808	0.0439937268016397	0.301300448226597
Merged-chr9-78448668-2	chr9	78448568	78448768	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026658, intron 1 of 11)	CpG	458.0	NM_026658	68291.0	Mm.291779	NM_026658	ENSMUSG00000032342	Mto1	2310039H01Rik|5730419A02Rik	mitochondrial tRNA translation optimization 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-76930863-2	chr18	76930734	76930934	+	606.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025409, intron 1 of 2)	intron (NM_025409, intron 1 of 2)	807.0	NM_025409	66191.0	Mm.28593	NM_025409	ENSMUSG00000090000	Ier3ip1	1110057H19Rik|AI644142|AL022842|AL022863|AV026606	immediate early response 3 interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-54627157-4	chr11	54627058	54627258	+	872.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252494, intron 11 of 28)	intron (NM_001252494, intron 11 of 28)	31012.0	NM_001252497	192786.0	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-75172471-2	chr14	75172371	75172571	+	808.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_008879, intron 1 of 16)	intron (NM_008879, intron 1 of 16)	36046.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-21742039-4	chr14	21741960	21742160	+	910.133301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001007268, intron 5 of 7)	intron (NM_001007268, intron 5 of 7)	819.0	NM_013849	27389.0	Mm.390674	NM_013849	ENSMUSG00000021768	Dusp13	DUSP13A|DUSP13B|Gm1203|LMW-DSP6|MDSP|TMDP|TS-DSP6	dual specificity phosphatase 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-32745970-2	chr12	32745870	32746070	+	940.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-74365.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-115603163-2	chr4	115603063	115603263	+	550.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001100181, intron 3 of 12)	intron (NM_001100181, intron 3 of 12)	2225.0	NM_001100181	100040843.0	Mm.482683	NM_001100181	ENSMUSG00000063929	Cyp4a32	-	cytochrome P450, family 4, subfamily a, polypeptide 32	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-63871859-4	chr17	63871732	63871932	+	874.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037997, intron 1 of 18)	RMER1B|Other|Other	-6234.0	NM_001286415	14158.0	Mm.23039	NM_008000	ENSMUSG00000000127	Fer	AV082135|C330004K01Rik|Fert|Fert2	fer (fms/fps related) protein kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-51848620-4	chr15	51848519	51848719	+	638.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080635, intron 1 of 7)	A-rich|Low_complexity|Low_complexity	16842.0	NM_080635	68135.0	Mm.289800	NM_080635	ENSMUSG00000022312	Eif3h	1110008A16Rik|40kD|9430017H16Rik|EIF3-P40|EIF3-gamma|Eif3s3	eukaryotic translation initiation factor 3, subunit H	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-103912896-2	chr3	103912788	103912988	+	731.25	f0_balb.idr|f1_balb.idr	TTS (NM_008979)	TTS (NM_008979)	-1232.0	NM_001356557	229675.0	Mm.29366	NM_172684	ENSMUSG00000044098	Rsbn1	C230004D03Rik|E330004N01|KDM9|Rosbin|Rsbn|Rsbp|mKIAA3002	rosbin, round spermatid basic protein 1	protein-coding	-1.24900173669778	-1.22209922953844	-1.23260730456294	-1.24123895025716	-0.973140129410997	-0.88914210142926	-1.23022850670784	-1.23969388980479	2.48739720405528	0.449861323143152	1
Merged-chr16-57399721-1	chr16	57399621	57399821	+	699.0	f1_balb.idr	intron (NM_001040397, intron 1 of 4)	ORR1D2|LTR|ERVL-MaLR	46444.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69577763-2	chr11	69577663	69577863	+	700.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144824, intron 2 of 9)	intron (NM_144824, intron 2 of 9)	1561.0	NM_144824	216853.0	Mm.31586	NM_144824	ENSMUSG00000041346	Wrap53	BC021790|Wdr79	WD repeat containing, antisense to Trp53	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-136671076-9	chr3	136670892	136671092	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008913, intron 1 of 13)	CpG	926.0	NM_001293622	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134119447-2	chr6	134119315	134119515	+	765.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 2 of 8)	Lx8|LINE|L1	83715.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	2.55073018627408	1.79837530559521	1.28155213640442	2.5349934775152	1.440729014868	2.63100096191491	2.21589383423597	2.36574165396129	0.173193562513129	0.861478762275269	0.998431161219273
Merged-chr6-83649927-2	chr6	83649827	83650027	+	898.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016751, intron 4 of 6)	intron (NM_016751, intron 4 of 6)	6189.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	-0.412993917622901	-0.401842764860794	-0.40551204220591	-0.00302961106141819	-0.15409079424924	0.0782498203136882	-0.404704087278964	-0.407840352119421	0.8716256525172	0.733885289174679	1
Merged-chr8-90793908-3	chr8	90793817	90794017	+	675.511108	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34918.0	NM_177224	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139537210-2	chr5	139537110	139537310	+	824.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_040701, intron 2 of 3)	intron (NR_040701, intron 2 of 3)	-6688.0	NM_013702	22255.0	Mm.42190	NM_013702	ENSMUSG00000029546	Uncx	Chx4|Uncx4.1	UNC homeobox	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114990880-1	chr11	114990780	114990980	+	548.0	f1_balb.idr	promoter-TSS (NM_145437)	promoter-TSS (NM_145437)	-994.0	NM_145437	217305.0	Mm.275986	NM_145437	ENSMUSG00000034641	Cd300ld	4732429D16Rik|CLM5|Cd300ld1|LMIR4|MAIR-IV|clm-5	CD300 molecule like family member d	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-120150078-2	chr6	120149978	120150178	+	757.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016718, intron 1 of 3)	intron (NM_016718, intron 1 of 3)	-43745.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-122138014-2	chr2	122137914	122138114	+	697.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_026251, intron 2 of 17)	intron (NM_026251, intron 2 of 17)	-9673.0	NM_009735	12010.0	Mm.163	NM_009735	ENSMUSG00000060802	B2m	Ly-m11|beta2-m|beta2m	beta-2 microglobulin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-88357899-2	chr1	88357799	88357999	+	663.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134252, intron 18 of 26)	intron (NM_134252, intron 18 of 26)	-49111.0	NM_029269	75396.0	Mm.173058	NM_029269	ENSMUSG00000026295	Spp2	0610038O04Rik|pp-24|spp24	secreted phosphoprotein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25682639-2	chr7	25682539	25682739	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172148, intron 1 of 2)	intron (NM_172148, intron 1 of 2)	1481.0	NM_172148	232987.0	Mm.22849	NM_172148	ENSMUSG00000063439	B9d2	stumpy	B9 protein domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-16634214-3	chr12	16634119	16634319	+	798.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19251.0	NM_001361702	18217.0	Mm.281715	NM_008747	ENSMUSG00000020591	Ntsr2	NT-R-2|NT2R|NTR2|NTRL	neurotensin receptor 2	protein-coding	1.14872662539787	0.747679355848955	0.734918009426761	1.21778336953591	1.27215546968568	1.57599076863022	1.70629225287764	0.726697548100514	1.63872426792623	0.261290539157827	0.762408459680314
Merged-chr11-94602743-1	chr11	94602643	94602843	+	684.0	f1_c57bl6.idr	promoter-TSS (NM_153807)	promoter-TSS (NM_153807)	-957.0	NM_153807	264895.0	Mm.386885	NM_153807	ENSMUSG00000076435	Acsf2	-	acyl-CoA synthetase family member 2	protein-coding	1.40051417870154	1.25396091696364	0.289027453648307	0.280926600854269	0.451598226361299	0.539093136082334	0.291322776934196	0.282349988240691	-3.00552864831364	0.111094006119326	1
Merged-chr13-5781454-2	chr13	5781354	5781554	+	618.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	76638.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-156568314-1	chr1	156568214	156568414	+	738.0	f1_balb.idr	intron (NM_001136104, intron 1 of 12)	intron (NM_001136104, intron 1 of 12)	9527.0	NM_001136104	11352.0	Mm.329515	NM_009595	ENSMUSG00000026596	Abl2	AA536808|Abll|Arg	v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)	protein-coding	1.55680539787871	0.758471524273246	1.12968114714486	1.56938515064265	1.04763162067621	0.761511320263151	0.747865693701123	1.75266498444988	-0.506017915427929	0.729568919127273	0.998431161219273
Merged-chr10-19527516-3	chr10	19527407	19527607	+	763.955566	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	32864.0	NR_152785	102635880.0	Mm.331974	NR_152784	ENSMUSG00000110902	Gm33104	-	predicted gene, 33104	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-9122626-4	chr19	9122531	9122731	+	992.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025610, intron 2 of 6)	RLTR49|LTR|ERVK	12935.0	NM_025610	66514.0	Mm.272847	NM_025610	ENSMUSG00000024654	Asrgl1	2410004D18Rik|ALP|ALP1|AU040643|AW060375	asparaginase like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-14533664-3	chr7	14533571	14533771	+	926.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045120, intron 12 of 12)	intron (NR_045120, intron 12 of 12)	28500.0	NM_001244031	627280.0	Mm.372763	NM_001039146	ENSMUSG00000100586	Vmn1r90	B430211C08Rik	vomeronasal 1 receptor 90	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-103484322-1	chr2	103484222	103484422	+	567.0	f1_c57bl6.idr	intron (NM_009804, intron 1 of 12)	intron (NM_009804, intron 1 of 12)	831.0	NM_009804	12359.0	Mm.4215	NM_009804	ENSMUSG00000027187	Cat	2210418N07|Cas-1|Cas1|Cs-1	catalase	protein-coding	0.155943655546151	-0.223009699593247	-0.22820916170266	0.674961004835232	-0.0829678721970936	-0.221839993814958	-0.227060912940715	-0.231528909182328	-3.03147078011795	0.196985760030825	1
Merged-chr6-127108910-2	chr6	127108810	127109010	+	604.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177003, intron 1 of 5)	intron (NM_177003, intron 1 of 5)	642.0	NM_177003	319801.0	Mm.101836	NM_177003	ENSMUSG00000038028	Tigar	9630033F20Rik|AA793651|AI595337|C79710|C85509	Trp53 induced glycolysis repulatory phosphatase	protein-coding	-2.18233058068552	-2.15536956715525	-2.16352280018114	-2.04193253143548	-2.18043796738662	-2.15360272754651	-2.16167708693786	-2.16902129354933	-0.683654500252594	0.846597994014493	1
Merged-chr11-117196897-3	chr11	117196777	117196977	+	876.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2784.0	NM_001113486	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-64018982-7	chr9	64018845	64019045	+	886.078247	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008542, intron 1 of 3)	intron (NM_008542, intron 1 of 3)	3114.0	NM_008542	17130.0	Mm.325757	NM_008542	ENSMUSG00000036867	Smad6	Madh6|b2b390Clo	SMAD family member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27237523-2	chr2	27237423	27237623	+	842.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_138665, intron 6 of 20)	intron (NM_138665, intron 6 of 20)	9780.0	NM_138665	192166.0	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16399218-4	chr7	16399147	16399347	+	904.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1949.0	NM_198631	330474.0	Mm.333594	NM_198631	ENSMUSG00000059273	Zc3h4	Bwq1|Gm768|Kiaa1064-hp|mKIAA1064	zinc finger CCCH-type containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-64876989-4	chr16	64876930	64877130	+	778.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER2|LTR|ERV1	25029.0	NM_178647	106143.0	Mm.10160	NM_178647	ENSMUSG00000054604	Cggbp1	AA960172|AL023996|AW045841	CGG triplet repeat binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-78151973-2	chr18	78151873	78152073	+	551.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_207651, intron 20 of 21)	intron (NM_207651, intron 20 of 21)	-9854.0	NM_001171011	108052.0	Mm.33832	NM_028122	ENSMUSG00000059336	Slc14a1	2610507K20Rik|3021401A05Rik|UT-B|Utb1	solute carrier family 14 (urea transporter), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36350117-2	chr18	36350017	36350217	+	603.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081365, intron 1 of 2)	ID_B1|SINE|B4	1493.0	NM_001081365	66060.0	Mm.272527	NM_001081365	ENSMUSG00000046727	Cystm1	0610010O12Rik	cysteine-rich transmembrane module containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-39544383-3	chr18	39544281	39544481	+	643.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57136.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-60737597-2	chr18	60737497	60737697	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001348146, intron 1 of 6)	intron (NM_001348146, intron 1 of 6)	-4456.0	NM_001348102	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-91661740-2	chr12	91661640	91661840	+	976.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 4 of 6)	RMER4B|LTR|ERVK	-71253.0	NM_175335	83602.0	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-149272674-4	chr5	149272573	149272773	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001308462, intron 2 of 3)	intron (NM_001308462, intron 2 of 3)	7669.0	NM_009663	11690.0	Mm.19844	NM_009663	ENSMUSG00000060063	Alox5ap	Flap	arachidonate 5-lipoxygenase activating protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-50312802-4	chr6	50312703	50312903	+	763.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027881, intron 15 of 21)	intron (NM_027881, intron 15 of 21)	-51034.0	NM_018769	54722.0	Mm.248361	NM_018769	ENSMUSG00000029821	Gsdme	2310037D07Rik|4932441K13Rik|Dfna5|Dfna5h|EG14210|Fin15	gasdermin E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97884192-4	chr11	97884073	97884273	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081435)	promoter-TSS (NM_001081435)	-19.0	NM_001081435	72973.0	Mm.245939	NM_001081435	ENSMUSG00000070336	Fbxo47	2900052P03Rik|Gm1562	F-box protein 47	protein-coding	2.63423395506919	2.11413146382599	2.94217184800067	2.77214189692642	2.65552999121255	3.06268985626366	2.39922463181376	2.87636162202741	0.229115805266857	0.751106124006068	0.998431161219273
Merged-chr6-87451221-3	chr6	87451110	87451310	+	620.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22216.0	NM_009756	12154.0	Mm.483321	NM_009756	ENSMUSG00000030046	Bmp10	b2b2711Clo	bone morphogenetic protein 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-134231647-4	chr5	134231524	134231724	+	966.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1999.0	NR_104383	17969.0	Mm.425296	NM_010876	ENSMUSG00000015950	Ncf1	NCF-47K|NOXO2|Ncf-1|p47-phox|p47<phox>|p47phox	neutrophil cytosolic factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64160291-4	chr5	64160243	64160443	+	923.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310611)	promoter-TSS (NM_001310611)	83.0	NM_001310611	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-55814985-4	chr4	55814876	55815076	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-282501.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-127789505-1	chr3	127789405	127789605	+	1000.0	f1_c57bl6.idr	promoter-TSS (NM_145133)	promoter-TSS (NM_145133)	-367.0	NM_145133	211550.0	Mm.31852	NM_145133	ENSMUSG00000046688	Tifa	T2bp	TRAF-interacting protein with forkhead-associated domain	protein-coding	0.899642946357076	1.18139211517251	1.41719584407706	0.742470809030816	1.66058326808531	1.001566271099	0.756352154350591	1.76297233147452	1.11358409665581	0.427519445018183	0.902392427013133
Merged-chr13-21179556-2	chr13	21179456	21179656	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009054)	promoter-TSS (NM_009054)	-375.0	NM_009054	19720.0	Mm.314056	NM_009054	ENSMUSG00000021326	Trim27	AW538890|Gm19403|Rfp	tripartite motif-containing 27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115209385-4	chr11	115209280	115209480	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033393, intron 8 of 9)	intron (NM_001033393, intron 8 of 9)	21893.0	NM_001033393	320534.0	Mm.260587	NM_001033393	ENSMUSG00000045980	Tmem104	C630005D06Rik|mFLJ00021	transmembrane protein 104	protein-coding	5.94303153561664	5.46621341147867	6.12486375812578	5.60960401400419	5.03795820310099	4.62598884305123	5.34269074812285	4.91532721331344	-0.92299754368238	0.00167203393246919	0.0293863229322735
Merged-chr3-131490044-2	chr3	131489944	131490144	+	574.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-74724.0	NM_001289479	23971.0	Mm.244912	NM_011863	ENSMUSG00000028032	Papss1	AI325286|Asapk|SK1	3'-phosphoadenosine 5'-phosphosulfate synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128556612-2	chr10	128556512	128556712	+	697.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-7444.0	NM_018860	67945.0	Mm.290786	NM_018860	ENSMUSG00000093674	Rpl41	1810055P16Rik|2210411K19Rik	ribosomal protein L41	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-57488617-4	chr8	57488507	57488707	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021788)	promoter-TSS (NM_021788)	644.0	NR_126555	78353.0	Mm.426240	NR_126553	ENSMUSG00000096917	2500002B13Rik	-	RIKEN cDNA 2500002B13 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-90265709-4	chr3	90265626	90265826	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_201407)	promoter-TSS (NM_201407)	491.0	NM_001356483	229541.0	Mm.30571	NM_201407	ENSMUSG00000042404	Dennd4b	-	DENN/MADD domain containing 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-142572016-2	chr7	142571916	142572116	+	721.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5131.0	NR_030416	735280.0		NR_030416	ENSMUSG00000076275	Mir675	Mirn675|mir-675|mmu-mir-675	microRNA 675	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-75366719-4	chr18	75366635	75366835	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001042660)	promoter-TSS (NM_001042660)	353.0	NR_155535	102636262.0	Mm.421168	NR_155535		Gm20544	-	predicted gene 20544	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80775450-4	chr7	80775388	80775588	+	978.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016721, intron 2 of 37)	B3|SINE|B2	27843.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	5.47551499841375	5.38476299369217	5.29193650622931	5.66998588530892	4.96777142168507	4.58523231568993	4.70777435846662	4.41570047888562	-0.914637219408244	0.0030933772692291	0.0463876934670395
Merged-chr14-75845849-4	chr14	75845720	75845920	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045294)	promoter-TSS (NR_045294)	564.0	NM_009429	22070.0	Mm.297482	NM_009429	ENSMUSG00000060126	Tpt1	TCTP|Trt|p21|p23	tumor protein, translationally-controlled 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-62757062-3	chr13	62756956	62757156	+	836.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3683.0	NR_030493	751548.0		NR_030493	ENSMUSG00000096098	Mir713	Mirn713|mir-713|mmu-mir-713	microRNA 713	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75591678-2	chr11	75591578	75591778	+	914.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_008850, intron 1 of 11)	intron (NM_008850, intron 1 of 11)	3599.0	NM_008850	18738.0	Mm.3128	NM_008850	ENSMUSG00000017781	Pitpna	Pitpn|vb|vibrator	phosphatidylinositol transfer protein, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-117031842-3	chr13	117031740	117031940	+	967.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6324.0	NM_001081009	52552.0	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141134557-2	chr4	141134505	141134705	+	541.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001277195, intron 1 of 3)	intron (NM_001277195, intron 1 of 3)	5191.0	NR_102344	213491.0	Mm.332006	NM_174996	ENSMUSG00000040842	Szrd1	1110022I03|D4Ertd22e	SUZ RNA binding domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125083190-3	chr6	125083085	125083285	+	720.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001163269)	TTS (NM_001163269)	11908.0	NM_001163268	381810.0	Mm.333386	NM_001163268	ENSMUSG00000067714	Lpar5	GPR93|Gm1072|Gpr92|LPA5	lysophosphatidic acid receptor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-173784563-4	chr2	173784467	173784667	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_019806)	TTS (NM_019806)	46996.0	NM_019806	56491.0	Mm.260456	NM_019806	ENSMUSG00000054455	Vapb	AI225786|AI840687|AI848259|D2Abb2e|R75548|VAP33b|Vamp33b	vesicle-associated membrane protein, associated protein B and C	protein-coding	2.6729546485882	2.56333189524622	2.5736663657222	2.95076519447952	1.95254852154545	1.8433802980038	1.30156133701442	1.52202800079608	-2.53707980991274	0.00593009168063281	0.0760841640974668
Merged-chr12-73779412-4	chr12	73779297	73779497	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-121927.0	NM_001313920	15251.0	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-61341696-2	chr10	61341596	61341796	+	810.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013753, intron 15 of 19)	intron (NM_013753, intron 15 of 19)	41827.0	NM_013753	27355.0	Mm.269699	NM_013753	ENSMUSG00000020092	Pald1	MMPAL|Pald|mKIAA1274	phosphatase domain containing, paladin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70254174-4	chr11	70254107	70254307	+	949.81665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007440, intron 2 of 13)	intron (NM_007440, intron 2 of 13)	1163.0	NM_001331118	11684.0	Mm.12286	NM_007440	ENSMUSG00000000320	Alox12	9930022G08Rik|Alox12p|P-12LO	arachidonate 12-lipoxygenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-155956456-4	chr2	155956386	155956586	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001129999)	promoter-TSS (NM_001129999)	-72.0	NM_001129999	16328.0	Mm.288729	NM_008383	ENSMUSG00000038241	Cep250	AW490617|B230210E21Rik|Cep2|Inmp	centrosomal protein 250	protein-coding	5.1561174865238	5.06761435479309	4.95458978788869	4.62121055344285	5.44265612907089	4.67780125771172	5.06459291462104	4.28308269314804	-0.0251739665233056	0.943847776610866	0.998431161219273
Merged-chr13-94063063-3	chr13	94063033	94063233	+	789.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172589, intron 1 of 3)	intron (NM_172589, intron 1 of 3)	5337.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-85164578-2	chr11	85164478	85164678	+	812.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MD3|LINE|L1	-6518.0	NM_028589	73634.0	Mm.48850	NM_028589	ENSMUSG00000018479	1700125H20Rik	-	RIKEN cDNA 1700125H20 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-89458081-4	chr4	89457995	89458195	+	976.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132431, intron 7 of 9)	intron (NR_132431, intron 7 of 9)	-147063.0	NM_007670	12579.0	Mm.423094	NM_007670	ENSMUSG00000073802	Cdkn2b	AV083695|INK4b|MTS2|p15|p15(INK4b)|p15INK4b	cyclin dependent kinase inhibitor 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-87140628-1	chr14	87140528	87140728	+	723.0	f1_c57bl6.idr	intron (NM_019670, intron 1 of 27)	intron (NM_019670, intron 1 of 27)	596.0	NM_019670	56419.0	Mm.440585	NM_019670	ENSMUSG00000022021	Diaph3	4930417P13Rik|Dia2|Diap3|Drf3|p134MDia2	diaphanous related formin 3	protein-coding	2.11537006222039	1.45124543853546	1.94649916248063	1.12323361825645	3.04361038259183	1.4612662238243	1.96280583293223	2.14564631202729	1.41608186585919	0.177409934873255	0.647293592702136
Merged-chr11-100355483-4	chr11	100355351	100355551	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359052, intron 1 of 12)	CpG	677.0	NM_001359052	15114.0	Mm.281700	NM_010404	ENSMUSG00000006930	Hap1	HAP-1	huntingtin-associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-90131872-7	chr7	90131767	90131967	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360867, intron 1 of 19)	intron (NM_001360867, intron 1 of 19)	1654.0	NM_001252520	233489.0	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-22150498-2	chr3	22150398	22150598	+	627.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030732, intron 2 of 15)	MER44D|DNA|TcMar-Tigger	73846.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165915861-2	chr2	165915783	165915983	+	822.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	-31045.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-45402296-2	chr2	45402196	45402396	+	843.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-284854.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72724790-2	chr6	72724690	72724890	+	758.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001079822, intron 3 of 12)	intron (NM_001079822, intron 3 of 12)	64255.0	NM_001079822	21415.0	Mm.440067	NM_009332	ENSMUSG00000055799	Tcf7l1	Tcf-3|Tcf3|bHLHb21	transcription factor 7 like 1 (T cell specific, HMG box)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-119324274-3	chr9	119324185	119324385	+	747.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1858.0	NM_133985	108737.0	Mm.293565	NM_133985	ENSMUSG00000036737	Oxsr1	2210022N24Rik|2810422B09Rik|AI462649|AW209236|Osr1|mKIAA1101	oxidative-stress responsive 1	protein-coding	0.675730781964889	0.290990152518057	0.282978208103016	1.28288581313948	0.565809418955759	0.292787608870563	0.284750737158594	0.74423619502831	-1.24600683760163	0.504955544881954	1
Merged-chr10-53877443-3	chr10	53877346	53877546	+	883.966675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-126537.0	NM_001081428	75906.0	Mm.436785	NM_001081428	ENSMUSG00000019856	Fam184a	3110012E06Rik|4930438C08Rik|4930589M24Rik	family with sequence similarity 184, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-81051739-4	chr3	81051633	81051833	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019971, intron 1 of 5)	intron (NM_019971, intron 1 of 5)	15317.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-16182070-2	chr3	16181970	16182170	+	951.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1095.0	NM_001358043	229096.0	Mm.23834	NM_172677	ENSMUSG00000047213	Ythdf3	9130022A11Rik	YTH domain family 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-28380385-3	chr10	28380270	28380470	+	646.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359356, intron 6 of 30)	intron (NM_001359356, intron 6 of 30)	-287990.0	NM_001305663	210757.0	Mm.123021	NM_178666	ENSMUSG00000049109	Themis	E430004N04Rik|Gasp|Spot|Tsepa|thylex	thymocyte selection associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-64929746-3	chr18	64929619	64929819	+	844.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114386, intron 1 of 30)	intron (NM_001114386, intron 1 of 30)	41963.0	NM_001114386	83814.0	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	2.16084964929857	1.8406752343953	2.09780792322638	2.46760887499263	2.27407349766722	1.38243791051923	2.35873321653117	2.6440225204649	0.214963300909538	0.816383706382648	0.998431161219273
Merged-chr6-136465207-4	chr6	136465097	136465297	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-49628.0	NM_001201390	100502936.0	Mm.21182	NM_001201390	ENSMUSG00000045291	E330021D16Rik	C85549	RIKEN cDNA E330021D16 gene	protein-coding	3.6264064883048	3.98429713973187	3.30228217222759	3.81435848010832	3.53189656727161	4.07541210024319	2.07725656107946	3.77145302250653	-0.230501937803267	0.696830076149826	0.997929106458421
Merged-chr11-103214372-4	chr11	103214244	103214444	+	765.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177801, intron 1 of 4)	Lx5b|LINE|L1	4088.0	NM_177801	328019.0	Mm.189646	NM_177801	ENSMUSG00000044787	Spata32	4933400C05Rik|VAD1.2	spermatogenesis associated 32	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-78263887-3	chr11	78263796	78263996	+	827.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001002004, intron 3 of 38)	intron (NM_001002004, intron 3 of 38)	2142.0	NM_001002004	72503.0	Mm.237103	NM_001002004	ENSMUSG00000010277	2610507B11Rik	AU022687|D11Bhm178e|D11Bhm179e|E1|Kiaa0100|mKIAA0100	RIKEN cDNA 2610507B11 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-70650276-4	chr13	70650093	70650293	+	923.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-12559.0	NM_144837	218333.0	Mm.139738	NM_144837	ENSMUSG00000034525	Ice1	C77245|mKIAA0947	interactor of little elongation complex ELL subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101646273-4	chr11	101646195	101646395	+	948.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18346.0	NM_025654	66599.0	Mm.41449	NM_025654	ENSMUSG00000010362	Rdm1	2410008M22Rik|AW212028|Rad52b	RAD52 motif 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-124519673-2	chr8	124519573	124519773	+	638.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-1094.0	NM_029746	76332.0	Mm.240108	NM_029746	ENSMUSG00000031979	Cog2	1190002B08Rik|2700012E02Rik|C86089|Ldlc	component of oligomeric golgi complex 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-8661365-4	chr8	8661262	8661462	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010111)	promoter-TSS (NM_010111)	-589.0	NM_010111	13642.0	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-117127259-3	chr5	117127166	117127366	+	662.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199685, intron 1 of 20)	intron (NM_001199685, intron 1 of 20)	-6322.0	NM_001081308	330177.0	Mm.24343	NM_183306	ENSMUSG00000061288	Taok3	2900006A08Rik|A130052D22|A430105I05Rik	TAO kinase 3	protein-coding	-1.107570214359	-1.08653447535648	-1.09741130683982	-0.688779236681923	-0.841983873845991	-1.08417742060026	-1.09494903060535	-1.10420625070982	-0.619773806471497	0.851573714113283	1
Merged-chr10-127530215-2	chr10	127530115	127530315	+	849.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_183297, intron 1 of 1)	intron (NM_183297, intron 1 of 1)	4344.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	0.0372083792008747	1.33952660737382	0.0579089103703987	0.263132567078096	0.0391697057258979	0.834800182395342	0.0600801141165551	0.0515843485697472	-1.28711830135865	0.530663855780485	1
Merged-chr7-138885770-3	chr7	138885666	138885866	+	965.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23740.0	NM_009760	12176.0	Mm.378890	NM_009760	ENSMUSG00000078566	Bnip3	Nip3	BCL2/adenovirus E1B interacting protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-21286700-6	chr19	21286610	21286810	+	815.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009551, exon 6 of 6)	3' UTR (NM_009551, exon 6 of 6)	14432.0	NM_009551	22682.0	Mm.292405	NM_009551	ENSMUSG00000024750	Zfand5	2310057A04Rik|5830475F03Rik|AA415485|Za20d2|Zfp216	zinc finger, AN1-type domain 5	protein-coding	-0.27806229094759	-0.259160530498018	-0.265289927243564	-0.270060252045535	0.272049477965571	0.763521454469693	-0.263932916513996	-0.269224234580206	4.02188009496215	0.0954124978098285	1
Merged-chr6-100170921-1	chr6	100170821	100171021	+	541.0	f1_c57bl6.idr	Intergenic	Intergenic	116437.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-63119052-3	chr4	63118959	63119159	+	843.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028326, intron 12 of 14)	intron (NM_028326, intron 12 of 14)	35113.0	NM_007443	11699.0	Mm.2197	NM_007443	ENSMUSG00000028356	Ambp	AI194774|ASPI|HI-30|Intin4|Itil|UTI	alpha 1 microglobulin/bikunin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-46312503-2	chr18	46312388	46312588	+	612.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001160399)	promoter-TSS (NM_001160399)	-560.0	NM_001160399	240261.0	Mm.329416	NM_001160399	ENSMUSG00000071855	Ccdc112	8430438M01Rik|AW108467	coiled-coil domain containing 112	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-53741210-4	chr9	53741100	53741300	+	891.587524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30335.0	NM_028060	72022.0	Mm.26159	NM_028060	ENSMUSG00000042195	Slc35f2	1500009K05Rik|AU019213	solute carrier family 35, member F2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-124232041-6	chr8	124231879	124232079	+	748.561096	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139272, intron 1 of 15)	CpG	585.0	NM_139272	108148.0	Mm.33808	NM_139272	ENSMUSG00000089704	Galnt2	AI480629	polypeptide N-acetylgalactosaminyltransferase 2	protein-coding	1.57209632215875	1.24242371588562	1.20105973299359	2.60557603107853	2.91705485965012	3.21519185780763	1.50113426175829	2.93900075565339	2.05434639246747	0.0426362447445626	0.29603568544286
Merged-chr8-18699459-8	chr8	18699365	18699565	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007426, intron 5 of 8)	L3|LINE|CR1	42097.0	NM_007426	11601.0	Mm.439874	NM_007426	ENSMUSG00000031465	Angpt2	Agpt2|Ang-2|Ang2	angiopoietin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-68257126-2	chr15	68257026	68257226	+	745.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_152182, intron 1 of 13)	intron (NR_152182, intron 1 of 13)	1730.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-154552676-4	chr2	154552555	154552755	+	845.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001171640, exon 1 of 1)	exon (NM_001171640, exon 1 of 1)	879.0	NM_001171640	70362.0	Mm.479620	NM_001171640	ENSMUSG00000078129	Actl10	1700007I08Rik	actin-like 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-21759500-1	chr14	21759400	21759600	+	687.0	f1_c57bl6.idr	intron (NM_001359953, intron 1 of 5)	Lx8|LINE|L1	7948.0	NM_001359953	67630.0	Mm.102765	NM_026283	ENSMUSG00000021770	Samd8	1110053F04Rik|1700010P07Rik|SMSr	sterile alpha motif domain containing 8	protein-coding	2.00314438897185	2.82148288194952	3.30297770471843	1.98465892674525	1.56631649622318	2.29419357796982	1.47990797079833	1.16452143016531	-2.21899972614015	0.0236108974205253	0.201005355192618
Merged-chr3-27258635-4	chr3	27258545	27258745	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MuRRS-int|LTR|ERV1	-58432.0	NM_009425	22035.0	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-5060356-4	chr7	5060273	5060473	+	943.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001290432, exon 6 of 6)	exon (NM_001290432, exon 6 of 6)	-1770.0	NM_133671	22185.0	Mm.360389	NM_133671	ENSMUSG00000030435	U2af2	65kDa	U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-160083815-4	chr2	160083690	160083890	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	67137.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	4.63521803895014	4.42479573126851	4.78571119046912	4.57782550261517	5.25975741857404	4.92357190422728	4.37367005495561	4.24369054551389	0.194371693928564	0.607206400637114	0.974576632476413
Merged-chr18-42589683-4	chr18	42589616	42589816	+	765.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10064.0	NM_181543	240239.0	Mm.186779	NM_181543	ENSMUSG00000042816	Gpr151	C130082O03Rik|GalRL|PGR7|nGPCR-2037	G protein-coupled receptor 151	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-35169542-4	chr7	35169436	35169636	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16849.0	NM_017394	53896.0	Mm.35567	NM_017394	ENSMUSG00000030495	Slc7a10	AL024237|Asc-1|D7Bwg0847e	solute carrier family 7 (cationic amino acid transporter, y+ system), member 10	protein-coding	0.342259923276122	0.213191075491958	0.206292742744927	0.754266388915749	0.694844091796018	0.970166205284376	0.207816723608074	0.201884773337954	1.00097746212686	0.608949214486391	1
Merged-chr1-85234614-1	chr1	85234514	85234714	+	725.0	f1_balb.idr	Intergenic	MTC|LTR|ERVL-MaLR	35003.0	NM_001081746	665378.0	Mm.440912	NM_001081746		Gm7609	EG665378	predicted pseudogene 7609	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-57989293-2	chr1	57989193	57989393	+	628.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177867, intron 1 of 5)	intron (NM_001177867, intron 1 of 5)	3953.0	NM_001177867	68549.0	Mm.32800	NM_199007	ENSMUSG00000026039	Sgo2a	1110007N04Rik|4932411A20Rik|5730576N04Rik|AU018846|AV008062|D1Ertd8e|Sgol2|Sgol2a|Tripin	shugoshin 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52645808-2	chr13	52645708	52645908	+	613.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001198977, exon 14 of 14)	3' UTR (NM_001198977, exon 14 of 14)	48926.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-122872375-2	chr6	122872275	122872475	+	653.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-2182.0	NM_026267	67602.0	Mm.288114	NM_026267	ENSMUSG00000030327	Necap1	1200016B17Rik|AI747569|mFLJ00061	NECAP endocytosis associated 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-27624844-2	chr15	27624744	27624944	+	665.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013792, intron 1 of 6)	intron (NM_001013792, intron 1 of 6)	5849.0	NM_001013792	432940.0	Mm.309164	NM_001013792	ENSMUSG00000046034	Otulin	C79097|Fam105b|m3Sapc|m7-1Sapc	OTU deubiquitinase with linear linkage specificity	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98952871-4	chr11	98952767	98952967	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009024, intron 2 of 8)	intron (NM_009024, intron 2 of 8)	-7604.0	NM_001176528	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-38432697-4	chr6	38432681	38432881	+	838.724976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-1144.0	NM_177185	320538.0	Mm.302831	NM_177185	ENSMUSG00000038538	Ubn2	2900060J04Rik|6030408G03Rik|BC060116|D130059P03Rik|mKIAA2030	ubinuclein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-103768154-4	chr13	103768045	103768245	+	857.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361085, intron 2 of 11)	intron (NM_001361085, intron 2 of 11)	-3563.0	NM_172592	218543.0	Mm.458176	NM_172592	ENSMUSG00000032621	Srek1	8430401B01|AI450757|AI462342|SRrp508|SRrp86|Sfrs12|Srsf12	splicing regulatory glutamine/lysine-rich protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141454307-2	chr7	141454207	141454407	+	551.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163689)	promoter-TSS (NM_001163689)	-881.0	NM_025802	66853.0	Mm.29998	NM_025802	ENSMUSG00000025509	Pnpla2	0610039C21Rik|1110001C14Rik|Atgl|TTS-2.2	patatin-like phospholipase domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-58563765-4	chr18	58563670	58563870	+	992.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081072, intron 1 of 9)	intron (NM_001081072, intron 1 of 9)	7530.0	NM_001081072	225579.0	Mm.258517	NM_001081072	ENSMUSG00000024600	Slc27a6	4732438L20Rik|FACVL2|FATP6|VLCS-H1	solute carrier family 27 (fatty acid transporter), member 6	protein-coding	2.48500671296512	1.90931230657743	2.40449797848268	1.96730090524836	2.33713361602946	1.92168845119279	2.52664974185046	2.54305471042167	0.323280546983355	0.702216190135125	0.998431161219273
Merged-chr12-3345254-3	chr12	3345174	3345374	+	971.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-19858.0	NM_008445	16570.0	Mm.7688	NM_008445	ENSMUSG00000020668	Kif3c	mKIAA4058	kinesin family member 3C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-65955379-2	chr5	65955279	65955479	+	837.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11745.0	NM_001081104	231252.0	Mm.140015	NM_001081104	ENSMUSG00000029205	Chrna9	2410015I05Rik|Acra9|EG666827|Gm8311	cholinergic receptor, nicotinic, alpha polypeptide 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125103333-4	chr6	125103212	125103412	+	946.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346610, intron 10 of 38)	intron (NM_001346610, intron 10 of 38)	6288.0	NR_106012	102466272.0		NR_106012	ENSMUSG00000098762	Mir7045	Gm27758|mmu-mir-7045	microRNA 7045	ncRNA	3.66158937379681	3.08171666702646	3.82667512160184	3.63435376267948	4.29205628163144	5.15052355363715	4.9708948923921	4.65808917607628	1.59956223597528	0.000219263588923817	0.00579454744473118
Merged-chr4-132515657-4	chr4	132515556	132515756	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5200.0	NM_144907	230784.0	Mm.23608	NM_144907	ENSMUSG00000028893	Sesn2	HI95|SEST2|Ses2	sestrin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-119401715-4	chr6	119401640	119401840	+	762.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197985, intron 1 of 7)	MTD|LTR|ERVL-MaLR	-13006.0	NM_001355692	68465.0	Mm.291826	NM_197985	ENSMUSG00000030168	Adipor2	1110001I14Rik|ADCR2|AI115388|AW554121|D6Ucla1e|Paqr2	adiponectin receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-138251886-2	chr4	138251822	138252022	+	719.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001099631, intron 1 of 9)	intron (NM_001099631, intron 1 of 9)	1511.0	NM_001099631	230863.0	Mm.482408	NM_001099631	ENSMUSG00000045349	Sh2d5	BC036961	SH2 domain containing 5	protein-coding	-0.259683063306077	0.221270202506229	-0.393793274924441	-0.396948802544577	-0.401403299576511	-0.388775670417633	0.0685973802812999	-0.396397738396645	-0.76937045598889	0.760991044242889	1
Merged-chr1-97662491-4	chr1	97662379	97662579	+	975.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133825)	promoter-TSS (NM_133825)	-461.0	NM_133825	52392.0	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139377202-2	chr5	139377102	139377302	+	618.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033147)	promoter-TSS (NR_033147)	-495.0	NM_001362206	80290.0	Mm.270003	NM_030258	ENSMUSG00000044197	Gpr146	BC003323|D830046C22Rik|PGR8	G protein-coupled receptor 146	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-47948449-4	chr8	47948300	47948500	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133791, intron 1 of 22)	intron (NM_133791, intron 1 of 22)	42151.0	NM_133791	52357.0	Mm.235074	NM_133791	ENSMUSG00000031563	Wwc2	5330431C14Rik|AU022508|C85457|D8Ertd594e	WW, C2 and coiled-coil domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-128593235-3	chr1	128593118	128593318	+	917.3428960000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009911)	promoter-TSS (NM_009911)	-919.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	1.70735196391183	2.31041526625987	1.33970080518388	1.30178543997494	1.38830615491839	0.942797691387386	1.77736736193142	0.906860471480112	-1.37392483544293	0.269169432875488	0.772729667165443
Merged-chr7-140944505-2	chr7	140944405	140944605	+	632.333374	f1_balb.idr|f1_c57bl6.idr	intron (NR_153832, intron 3 of 11)	intron (NR_153832, intron 3 of 11)	3114.0	NM_145387	212974.0	Mm.260139	NM_145387	ENSMUSG00000062031	Pgghg	5730511L01Rik|Athl1|BC023151	protein glucosylgalactosylhydroxylysine glucosidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-78820777-2	chr11	78820677	78820877	+	648.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5818.0	NM_001076681	66274.0	Mm.258932	NM_001076681	ENSMUSG00000072640	Lyrm9	1810012P15Rik	LYR motif containing 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-47533834-4	chr14	47533752	47533952	+	955.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34582.0	NM_172599	100504663.0	Mm.287279	NM_172599	ENSMUSG00000037526	Atg14	4832427M01|Atg14L|D14Ertd114e|D14Ertd436e	autophagy related 14	protein-coding	5.83426721497793	6.40710866175934	5.00241285570467	5.99301807075098	5.10830257029625	4.97816281728644	3.65420846796866	4.9728713552514	-1.26621471616702	0.000586122709339169	0.0127396743961075
Merged-chr1-183273278-4	chr1	183273098	183273298	+	829.674988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2B2|LINE|L1	-23862.0	NM_181732	108909.0	Mm.290502	NM_145626	ENSMUSG00000042901	Aida	2610208M17Rik|BC004835	axin interactor, dorsalization associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-45005659-4	chr19	45005560	45005760	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153796)	promoter-TSS (NM_153796)	-3.0	NM_001348254	226153.0	Mm.105585	NM_153796	ENSMUSG00000025209	Twnk	D19Ertd626e|PEO|Peo1|Twinl	twinkle mtDNA helicase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-109737187-1	chr8	109737087	109737287	+	630.5	f0_balb.idr	intron (NM_001080930, intron 1 of 3)	intron (NM_001080930, intron 1 of 3)	552.0	NM_001080930	52335.0	Mm.276770	NM_001080930	ENSMUSG00000069895	Atxn1l	AW558552|Boat|C330011L24Rik|D6Mgi37|D8Ertd587e	ataxin 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-5538007-2	chr8	5537907	5538107	+	876.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-432720.0	NM_011388	20494.0	Mm.3500	NM_011388	ENSMUSG00000023073	Slc10a2	9130221J18Rik|AI605518|ASBT|IBAT|ISBT	solute carrier family 10, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-84235691-2	chr17	84235616	84235816	+	600.75	f0_balb.idr|f1_c57bl6.idr	intron (NM_183021, intron 31 of 37)	intron (NM_183021, intron 31 of 37)	-47769.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25330151-2	chr7	25330051	25330251	+	582.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001160400, exon 6 of 41)	exon (NM_001160400, exon 6 of 41)	12987.0	NM_001160400	269878.0	Mm.38527	NM_001160400	ENSMUSG00000045039	Megf8	AW049492|Egfl4|b2b1702.2Clo|b2b1702Clo|b2b288Clo|m687Ddg|mKIAA0817	multiple EGF-like-domains 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-36234775-2	chr17	36234675	36234875	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23071.0	NM_026308	67676.0	Mm.27131	NM_026308	ENSMUSG00000024446	Rpp21	0610037N01Rik	ribonuclease P 21 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97479442-4	chr6	97479325	97479525	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	LTR16A|LTR|ERVL	8395.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	7.81156921328142	7.81091829487984	7.58394295631962	7.71040128898644	7.52442660803224	7.84213710050682	7.62392256024208	7.67482374854791	-0.0681330801865921	0.623403071555877	0.980259659844413
Merged-chr15-77945873-4	chr15	77945795	77945995	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001017983, intron 7 of 8)	intron (NM_001017983, intron 7 of 8)	10827.0	NM_001168260	239554.0	Mm.295605	NM_001017983	ENSMUSG00000016552	Foxred2	A430097D04Rik|D15Bwg0759e|Gm304	FAD-dependent oxidoreductase domain containing 2	protein-coding	4.0635316855174	3.25445529234479	3.244995026435	3.40947096327916	3.84577000551055	2.74748897820857	3.05828052032798	3.16952376546835	-0.414521154800996	0.483497122214721	0.931207887927275
Merged-chr19-34959611-3	chr19	34959505	34959705	+	796.966675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183046, intron 25 of 31)	intron (NM_183046, intron 25 of 31)	-5791.0	NR_035473	100316775.0		NR_035473	ENSMUSG00000089151	Mir1950	mmu-mir-1950	microRNA 1950	ncRNA	2.66217077884945	2.47970424487104	1.80552450064355	1.7553279110875	1.53029305795305	1.22772196246726	1.96685518041183	1.9053639505073	-1.4701626061676	0.144713861509224	0.594614499622435
Merged-chr10-99931506-2	chr10	99931406	99931606	+	859.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-84315.0	NM_001347156	17311.0	Mm.45124	NM_013598	ENSMUSG00000019966	Kitl	Clo|Con|Gb|Kitlg|Mgf|SCF|SF|SLF|Sl|blz|contrasted	kit ligand	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-86919794-2	chr3	86919609	86919809	+	834.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001195500, intron 1 of 11)	CpG	1175.0	NM_001195499	70762.0	Mm.44490	NM_027539	ENSMUSG00000028078	Dclk2	6330415M09Rik|AU044875|CL2|CLICK2|Click-II|Dcamkl2	doublecortin-like kinase 2	protein-coding	0.148524946555879	0.361304776593421	0.161132104791284	0.691414280050782	0.149696072185567	0.792434044211002	0.627443172259157	0.157222463511768	0.686141835065046	0.733268261137547	1
Merged-chr11-69879357-2	chr11	69879257	69879457	+	775.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_153143, exon 1 of 1)	3' UTR (NM_153143, exon 1 of 1)	-1339.0	NM_001195710	100503361.0	Mm.340490	NM_001195710	ENSMUSG00000094845	Tmem95	432576	transmembrane protein 95	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-57247843-4	chr17	57247759	57247959	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001308074)	promoter-TSS (NM_001308074)	-170.0	NM_030084	78308.0	Mm.28468	NM_030084	ENSMUSG00000005823	Gpr108	1810015L19Rik|AA589464|C79132|Lustr2	G protein-coupled receptor 108	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-7915998-2	chr17	7915898	7916098	+	693.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10002.0	NM_145968	72536.0	Mm.119680	NM_145968	ENSMUSG00000033450	Tagap	2610315E15Rik|TRD|Tcd-1|Tcd1|Tcd1a|tcs-1|tcs1	T cell activation Rho GTPase activating protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84192199-4	chr8	84192096	84192296	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13235.0	NR_029821	723819.0		NR_029821	ENSMUSG00000065483	Mir181c	Mirn181c|mir-181c	microRNA 181c	ncRNA	5.26067462981259	5.31501574792842	5.32320834150276	5.31202164403552	5.19557999268522	4.67489371695472	5.63917925861087	5.44429600242687	-0.0166293002871947	0.955892797626001	0.998431161219273
Merged-chr14-103831193-2	chr14	103831093	103831293	+	729.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001276296, intron 1 of 7)	intron (NM_001276296, intron 1 of 7)	12508.0	NM_007904	13618.0	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-33497176-4	chr4	33497066	33497266	+	868.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305273, intron 14 of 15)	intron (NM_001305273, intron 14 of 15)	59085.0	NR_106198	102465904.0		NR_106198	ENSMUSG00000098310	Mir8118	Gm27954|mmu-mir-8118	microRNA 8118	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-43380105-4	chr16	43379999	43380199	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181058, intron 2 of 6)	intron (NM_181058, intron 2 of 6)	40097.0	NR_046026	626693.0	Mm.447083	NR_046026	ENSMUSG00000085499	Gm15713	-	predicted gene 15713	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128745976-4	chr2	128745853	128746053	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 4 of 18)	intron (NM_008587, intron 4 of 18)	47038.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	4.3643050990836	4.18370011267983	5.00268392169357	4.66177124210049	4.26510141589809	4.83218560186671	4.07625216936507	4.20556461175183	-0.279034846226958	0.484721449757395	0.931503676591975
Merged-chr6-8420818-1	chr6	8420718	8420918	+	544.0	f0_balb.idr	intron (NM_001302353, intron 4 of 4)	intron (NM_001302353, intron 4 of 4)	88343.0	NR_040452	320312.0	Mm.374890	NR_040452	ENSMUSG00000087305	A430035B10Rik	2810488G03Rik	RIKEN cDNA A430035B10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-108077711-3	chr11	108077597	108077797	+	857.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011101, intron 3 of 16)	intron (NM_011101, intron 3 of 16)	80849.0	NR_106082	102465705.0		NR_106082	ENSMUSG00000098989	Mir7223	Gm28009|mmu-mir-7223	microRNA 7223	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-88635616-1	chr8	88635516	88635716	+	952.3333130000001	f1_c57bl6.idr	intron (NM_027840, intron 1 of 3)	intron (NM_027840, intron 1 of 3)	512.0	NM_027840	71607.0	Mm.270607	NM_027840	ENSMUSG00000031662	Snx20	9130017C17Rik	sorting nexin 20	protein-coding	3.65740478464339	3.61527696563911	4.8863329694381	3.8515370069796	3.68763678433218	3.64237761855964	4.227668546132	3.09174950016902	-0.551831054354519	0.296137472855574	0.798938452555064
Merged-chr9-7554541-4	chr9	7554444	7554644	+	887.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-3885.0	NM_008611	17394.0	Mm.16415	NM_008611	ENSMUSG00000005800	Mmp8	BB138268	matrix metallopeptidase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-131554535-2	chr7	131554435	131554635	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_145998, exon 1 of 2)	exon (NM_145998, exon 1 of 2)	473.0	NM_145998	15372.0	Mm.303357	NM_145998	ENSMUSG00000050100	Hmx2	Nkx-5.2|Nkx5-2	H6 homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-193271235-2	chr1	193271135	193271335	+	709.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_008059)	TTS (NM_008059)	1953.0	NM_008059	14373.0	Mm.439721	NM_008059	ENSMUSG00000009633	G0s2	AI255151|AV006465	G0/G1 switch gene 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-77514147-2	chr1	77514047	77514247	+	568.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007936, intron 1 of 17)	intron (NM_007936, intron 1 of 17)	941.0	NM_007936	13838.0	Mm.400747	NM_007936	ENSMUSG00000026235	Epha4	2900005C20Rik|AI385584|Cek8|Hek8|Sek|Sek1|Tyro1|rb	Eph receptor A4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-6472741-2	chr17	6472641	6472841	+	642.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21747.0	NR_033520	547127.0	Mm.297552	NM_001045538		Tmem181b-ps	Tmem181b	transmembrane protein 181B, pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-107837412-2	chr13	107837312	107837512	+	666.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 2 of 14)	intron (NM_145456, intron 2 of 14)	52652.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-125556384-1	chr7	125556284	125556484	+	649.0	f1_c57bl6.idr	intron (NM_001008700, intron 1 of 10)	intron (NM_001008700, intron 1 of 10)	4102.0	NM_001008700	16190.0	Mm.233802	NM_010557	ENSMUSG00000030748	Il4ra	CD124|Il4r	interleukin 4 receptor, alpha	protein-coding	-1.14149542847138	-0.33100028091332	-1.12720875772362	-1.13728867753953	-1.14086750656251	-1.11193125150289	-1.12436624874263	-1.1356767669541	-2.98824766641611	0.369648585513947	1
Merged-chr10-59910554-3	chr10	59910475	59910675	+	758.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	30984.0	NM_019965	56709.0	Mm.103610	NM_019965	ENSMUSG00000020109	Dnajb12	Dj10|mDj10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70522219-4	chr8	70522130	70522330	+	847.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029366, intron 1 of 4)	B2_Mm2|SINE|B2	950.0	NM_029366	75620.0	Mm.482129	NM_029366	ENSMUSG00000055553	Kxd1	0610030B01Rik|2810422J05Rik|C78305	KxDL motif containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91917261-2	chr16	91917161	91917361	+	835.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010587, exon 39 of 39)	3' UTR (NM_010587, exon 39 of 39)	14369.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4058035-2	chr19	4057935	4058135	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144869, intron 5 of 6)	intron (NM_144869, intron 5 of 6)	1412.0	NM_144869	225884.0	Mm.440201	NM_144869	ENSMUSG00000058216	Gstp3	-	glutathione S-transferase pi 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-10617814-4	chr18	10617718	10617918	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009226)	promoter-TSS (NM_009226)	22.0	NM_009226	20641.0	Mm.603	NM_009226	ENSMUSG00000002477	Snrpd1	AA407109|AL023031|SMD1	small nuclear ribonucleoprotein D1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83131770-4	chr6	83131632	83131832	+	934.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4076.0	NM_001136227	20166.0	Mm.4139	NM_009106	ENSMUSG00000034930	Rtkn	-	rhotekin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-124714753-4	chr4	124714661	124714861	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029157)	promoter-TSS (NM_029157)	-100.0	NM_029157	75062.0	Mm.25779	NM_029157	ENSMUSG00000028902	Sf3a3	4930512K19Rik|60kDa	splicing factor 3a, subunit 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-32281952-2	chr4	32281852	32282052	+	636.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-135483.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-60438867-4	chr3	60438747	60438947	+	877.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33983.0	NM_001253713	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-113813883-2	chr5	113813783	113813983	+	591.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-13531.0	NM_146162	231633.0	Mm.41681	NM_146162	ENSMUSG00000054675	Tmem119	AW208946|BC025600|obif	transmembrane protein 119	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-90260917-2	chr9	90260817	90261017	+	630.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 1 of 12)	intron (NM_194334, intron 1 of 12)	9852.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-124671192-2	chr2	124671092	124671292	+	705.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	17611.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-88279766-4	chr8	88279668	88279868	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007406, intron 1 of 27)	intron (NM_007406, intron 1 of 27)	-3224.0	NM_001109756	11513.0	Mm.288206	NM_007406	ENSMUSG00000031659	Adcy7	AA407758	adenylate cyclase 7	protein-coding	1.14084487844961	0.521603376751252	0.504284066301178	0.490496560755164	0.470317434242905	0.800487841674402	1.42943185387907	2.21744496059069	2.69811721593856	0.0950418093213492	0.477397401941879
Merged-chr11-50041252-2	chr11	50041152	50041352	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290750, intron 1 of 7)	intron (NM_001290750, intron 1 of 7)	15921.0	NM_001290750	59044.0	Mm.359004	NM_021540	ENSMUSG00000020376	Rnf130	2510042A13Rik|G1RZFP|G1rp|GOLIATH|GP	ring finger protein 130	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120355767-3	chr11	120355655	120355855	+	768.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	-5779.0	NM_172802	238021.0	Mm.481403	NM_172802	ENSMUSG00000025380	Fscn2	A930022G03|Ahl8|C630046B20Rik	fascin actin-bundling protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-120098041-4	chr2	120097930	120098130	+	927.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133838, intron 4 of 5)	intron (NM_133838, intron 4 of 5)	56545.0	NM_133838	98878.0	Mm.132226	NM_133838	ENSMUSG00000027293	Ehd4	2210022F10Rik|AI197390|AI846352|AV006278|Past2	EH-domain containing 4	protein-coding	3.42876528337944	4.54622275234278	3.36329009881244	3.78612920726043	1.33098115919707	2.13375809700524	2.88703141672105	1.96910285731672	-2.8463515381945	0.000100280536172664	0.00309562403001617
Merged-chr3-51486457-1	chr3	51486357	51486557	+	1000.0	f1_balb.idr	intron (NM_016858, intron 1 of 1)	MTB_Mm|LTR|ERVL-MaLR	2491.0	NM_016858	19338.0	Mm.1664	NM_016858	ENSMUSG00000027739	Rab33b	-	RAB33B, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131524014-4	chr1	131523906	131524106	+	852.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081011, intron 2 of 22)	intron (NM_001081011, intron 2 of 22)	3355.0	NM_001081011	14270.0	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	1.06341844022132	0.299885242120814	0.818302519094152	0.0683809438821262	0.0600012999273667	0.0834851274524688	0.0759227145256759	0.0694101151037139	-4.27697849533761	0.039329195074228	1
Merged-chr3-79814022-4	chr3	79813946	79814146	+	860.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_027495, exon 12 of 12)	3' UTR (NM_027495, exon 12 of 12)	28616.0	NM_027495	70652.0	Mm.46635	NM_027495	ENSMUSG00000027956	Tmem144	1110057I03Rik|5730537D05Rik	transmembrane protein 144	protein-coding	0.410861011829177	0.435590723035359	1.01624806323845	0.974780968998759	1.00670177804034	0.437401254911635	0.429314517513003	0.982089326549981	0.0155727871940349	0.993148125483709	1
Merged-chr2-167334581-2	chr2	167334481	167334681	+	951.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_019835, intron 1 of 8)	intron (NM_019835, intron 1 of 8)	14597.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-62536132-2	chr10	62536032	62536232	+	609.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8687.0	NM_001358965	19073.0	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-55830747-2	chr16	55830647	55830847	+	828.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030612, intron 2 of 13)	MLT1B|LTR|ERVL-MaLR	7894.0	NM_030612	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70463932-2	chr11	70463832	70464032	+	762.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_001348337, exon 7 of 14)	exon (NM_001348337, exon 7 of 14)	-3948.0	NM_023158	66102.0	Mm.425692	NM_023158	ENSMUSG00000018920	Cxcl16	0910001K24Rik|AV290116|BB024863|CXCL16v1|CXCL16v2|SR-PSOX|Zmynd15|b2b498Clo	chemokine (C-X-C motif) ligand 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-119167832-3	chr4	119167742	119167942	+	955.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6014.0	NM_001145935	195522.0	Mm.169620	NM_183140	ENSMUSG00000045268	Zfp691	6430544H17Rik|Znf691	zinc finger protein 691	protein-coding	2.63900339115371	2.56000004522372	1.86436801418843	3.38678507710083	2.29164981841939	2.57946664271733	1.39706233360307	2.15418827354255	-1.17824017410391	0.181655423746968	0.655055855338705
Merged-chr7-16616346-2	chr7	16616246	16616446	+	668.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_136929, intron 1 of 2)	intron (NR_136929, intron 1 of 2)	-1353.0	NM_172739	232906.0	Mm.28646	NM_172739	ENSMUSG00000058230	Arhgap35	6430596G11Rik|AI841135|Grlf1|mKIAA1722|p190A|p190RhoGAP	Rho GTPase activating protein 35	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4158854-2	chr19	4158754	4158954	+	678.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_021485, exon 9 of 15)	exon (NM_021485, exon 9 of 15)	4208.0	NM_016933	19265.0	Mm.271937	NM_016933	ENSMUSG00000045826	Ptprcap	AI605264|CD-45-AP|LPAP|LSM-1	protein tyrosine phosphatase, receptor type, C polypeptide-associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-172310954-2	chr1	172310858	172311058	+	740.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1409.0	NM_080419	140559.0	Mm.271717	NM_080419	ENSMUSG00000038034	Igsf8	ESTM34|EWI-2|KCT-4|PGRL	immunoglobulin superfamily, member 8	protein-coding	2.04341887954138	2.28809923721698	1.98142465573202	1.79689324161516	1.85063886700744	2.06215407771898	2.22881495611115	1.47574634094321	-0.286211927648033	0.762207565110865	0.998431161219273
Merged-chr18-35027299-4	chr18	35027204	35027404	+	972.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72953.0	NM_010481	15526.0	Mm.209419	NM_010481	ENSMUSG00000024359	Hspa9	74kDa|Csa|Grp75|Hsc74|Hsp74|Hsp74a|Hspa9a|Mortalin|Mot-2|Mot2|Mthsp70|Pbp74	heat shock protein 9	protein-coding	3.77634326214053	4.87334237884502	3.87787456239595	3.68459895781208	4.92584301192629	4.72508091894514	4.25762531117781	4.92309718540371	0.769035312006285	0.0720651074428858	0.404414012675278
Merged-chr7-45017734-4	chr7	45017640	45017840	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009101)	promoter-TSS (NM_009101)	-202.0	NM_009101	20130.0	Mm.389894	NM_009101	ENSMUSG00000038387	Rras	AI573426	related RAS viral (r-ras) oncogene	protein-coding	6.70074440760624	6.40832756075414	6.54413846338702	6.528048374714	6.16133472172504	6.23094151682448	6.66684618046104	6.6049254524201	-0.129676354603051	0.527139576380094	0.948839578239191
Merged-chr1-77514719-3	chr1	77514585	77514785	+	906.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007936, intron 1 of 17)	CpG	403.0	NM_007936	13838.0	Mm.400747	NM_007936	ENSMUSG00000026235	Epha4	2900005C20Rik|AI385584|Cek8|Hek8|Sek|Sek1|Tyro1|rb	Eph receptor A4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-67289130-4	chr18	67289041	67289241	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053261)	promoter-TSS (NM_053261)	-82.0	NM_053261	114663.0	Mm.34079	NM_053261	ENSMUSG00000024525	Impa2	2210415D20Rik|AI326924|AW259601	inositol (myo)-1(or 4)-monophosphatase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-104139770-4	chr13	104139661	104139861	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001361054, exon 11 of 11)	exon (NM_001361054, exon 11 of 11)	30020.0	NM_144838	218544.0	Mm.44416	NM_144838	ENSMUSG00000042743	Sgtb	C630001O05Rik	small glutamine-rich tetratricopeptide repeat (TPR)-containing, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-68982984-1	chr2	68982884	68983084	+	614.0	f0_balb.idr	intron (NM_001347161, intron 3 of 10)	Lx8|LINE|L1	121543.0	NM_001347161	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-38484873-5	chr2	38484840	38485040	+	989.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26757.0	NM_021606	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-22357640-3	chr10	22357532	22357732	+	971.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009018, intron 6 of 6)	ORR1D1|LTR|ERVL-MaLR	-4262.0	NM_020030	56554.0	Mm.458004	NM_020030	ENSMUSG00000078452	Raet1d	RAE-1delta	retinoic acid early transcript delta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-44631146-2	chr10	44631046	44631246	+	543.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	(GA)n|Simple_repeat|Simple_repeat	-172398.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-36240444-2	chr2	36240344	36240544	+	691.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008969, intron 5 of 10)	intron (NM_008969, intron 5 of 10)	10018.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-26309845-2	chr15	26309745	26309945	+	697.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177597, intron 1 of 3)	intron (NM_177597, intron 1 of 3)	797.0	NM_001310774	211147.0	Mm.54257	NM_177597	ENSMUSG00000022269	March11	9630025C22	membrane-associated ring finger (C3HC4) 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105279146-2	chr8	105279046	105279246	+	846.583374	f1_balb.idr|f1_c57bl6.idr	exon (NM_030152, exon 2 of 4)	exon (NM_030152, exon 2 of 4)	2699.0	NM_030152	78688.0	Mm.475715	NM_030152	ENSMUSG00000014776	Nol3	ARC|B430311C09Rik|MYC|NOP|Nop30	nucleolar protein 3 (apoptosis repressor with CARD domain)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-39246598-1	chr10	39246498	39246698	+	554.0	f0_balb.idr	Intergenic	Intergenic	-82804.0	NM_001127376	327743.0	Mm.208111	NM_001127376	ENSMUSG00000062074	Wisp3	CCN6|Gm735|WISP-3	WNT1 inducible signaling pathway protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78571633-4	chr15	78571517	78571717	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009008, intron 1 of 6)	intron (NM_009008, intron 1 of 6)	1166.0	NM_009008	19354.0	Mm.1972	NM_009008	ENSMUSG00000033220	Rac2	AI323801|AI452260	Rac family small GTPase 2	protein-coding	0.785957331323674	0.477154700928543	1.67346231522142	0.453314169379244	0.794947420421415	0.480116684617874	1.60899293099026	0.455164910068524	-0.102926416507062	0.951397573784823	0.998431161219273
Merged-chr9-83537649-4	chr9	83537557	83537757	+	967.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-10681.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-72280965-1	chr12	72280865	72281065	+	583.0	f1_c57bl6.idr	intron (NM_001286448, intron 1 of 6)	B4|SINE|B4	-44238.0	NM_001007596	104001.0	Mm.221275	NM_153457	ENSMUSG00000021087	Rtn1	Nsp	reticulon 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101092846-4	chr7	101092706	101092906	+	885.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15969.0	NM_001146010	207278.0	Mm.263041	NM_199012	ENSMUSG00000030691	Fchsd2	BC034086|R74866|Sh3md3|mKIAA0769	FCH and double SH3 domains 2	protein-coding	1.49823306424617	1.46171646903654	2.46688384358336	2.91514688588221	1.06632818950413	2.67903928659259	1.14436863940232	2.49662524501891	-0.38702060454415	0.7303335294367	0.998431161219273
Merged-chr8-3588118-2	chr8	3588018	3588218	+	575.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347111, intron 1 of 18)	CpG	668.0	NM_001347111	69697.0	Mm.390010	NM_027171	ENSMUSG00000044433	Camsap3	2310057J16Rik|Kiaa1543|Nezha	calmodulin regulated spectrin-associated protein family, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-54045450-1	chr19	54045350	54045550	+	570.0	f1_c57bl6.idr	5' UTR (NM_007417, exon 1 of 1)	5' UTR (NM_007417, exon 1 of 1)	268.0	NM_007417	11551.0	Mm.235195	NM_007417	ENSMUSG00000033717	Adra2a	AW122659|Adra-2|Adra-2a|alpha(2A)AR|alpha2-C10|alpha2A|alpha2A-AR	adrenergic receptor, alpha 2a	protein-coding	0.164139146218043	1.33389672954787	0.189467564589693	0.403188015231976	0.166551612543303	0.203951866114407	1.45129854258004	0.181759604282752	0.072728471316824	0.982383543467434	0.998431161219273
Merged-chr2-154605639-2	chr2	154605539	154605739	+	595.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-1966.0	NM_021534	59038.0	Mm.24673	NM_021534	ENSMUSG00000000876	Pxmp4	3010018P03Rik|Pmp24	peroxisomal membrane protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-50056618-1	chr14	50056518	50056718	+	623.0	f0_c57.idr	Intergenic	(GAA)n|Simple_repeat|Simple_repeat	-21118.0	NM_146317	258314.0	Mm.223011	NM_146317	ENSMUSG00000068437	Olfr725	MOR246-3|MOR246-7_p	olfactory receptor 725	protein-coding	-1.08930810280409	-1.20385100706058	-1.05340295878241	-0.927766819009836	-1.22887434486778	-1.20163833779615	-1.21175011408126	-1.22094749688867	-2.33842142622809	0.445584695310369	1
Merged-chr15-81360476-2	chr15	81360365	81360565	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_011399, intron 1 of 8)	intron (NM_011399, intron 1 of 8)	300.0	NM_011399	20524.0	Mm.222536	NM_011399	ENSMUSG00000022404	Slc25a17	34kDa|47kDa|PMP34|Pmp47	solute carrier family 25 (mitochondrial carrier, peroxisomal membrane protein), member 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-76978157-3	chr18	76978059	76978259	+	758.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33775.0	NM_001361227	76987.0	Mm.236127	NM_029826	ENSMUSG00000025421	Hdhd2	0610039H12Rik|3110052N05Rik	haloacid dehalogenase-like hydrolase domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80420940-2	chr7	80420872	80421072	+	709.1999509999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-15536.0	NM_001081454	18550.0	Mm.5241	NM_011046	ENSMUSG00000030530	Furin	9130404I01Rik|Fur|PACE|Pcsk3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-111967210-4	chr13	111967103	111967303	+	968.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	99267.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	4.98822064251312	3.71117823007378	2.4115381226608	4.59049187098846	5.61500697351676	4.8495151540185	3.39112560733184	4.65376019828627	0.755458407762841	0.380866897261828	0.872649550356036
Merged-chr13-94105125-2	chr13	94105025	94105225	+	888.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_172589, intron 1 of 3)	intron (NM_172589, intron 1 of 3)	47329.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-44760208-1	chr18	44760108	44760308	+	604.0	f1_balb.idr	intron (NM_001085373, intron 1 of 18)	intron (NM_001085373, intron 1 of 18)	51974.0	NM_001085373	328949.0	Mm.312511	NM_001033406	ENSMUSG00000071856	Mcc	D18Ertd451e|E330037C19	mutated in colorectal cancers	protein-coding	2.34846504292914	2.32456862829226	2.78885405767295	2.7104485115326	2.36825391237325	2.78864416386934	3.25786126579988	3.47646790214678	0.920586931427358	0.196325429063205	0.677629928399006
Merged-chr12-100212919-2	chr12	100212819	100213019	+	584.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12775.0	NM_001313934	12313.0	Mm.285993	NM_009790	ENSMUSG00000001175	Calm1	AI256814|AI327027|AI461935|AL024000|CaM|Calm|Cam1	calmodulin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-64260531-1	chr13	64260431	64260631	+	557.0	f1_c57bl6.idr	intron (NR_045798, intron 1 of 2)	RMER15|LTR|ERVL	11831.0	NR_045798	66503.0	Mm.443331	NR_045798	ENSMUSG00000097101	1810034E14Rik	-	RIKEN cDNA 1810034E14 gene	ncRNA	0.875155420725976	1.38487460372493	1.09507925380212	0.594126596856927	1.37220059965241	0.827877819854721	0.801362956137762	0.595512353135621	-0.365192058377299	0.809716415356306	0.998431161219273
Merged-chr4-103119791-3	chr4	103119695	103119895	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039081, intron 1 of 12)	CpG	405.0	NM_001039081	71148.0	Mm.288721	NM_027696	ENSMUSG00000028522	Mier1	4933425I22Rik|5830411K19Rik|er1	MEIR1 treanscription regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-75300046-4	chr10	75299943	75300143	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153406, intron 13 of 15)	intron (NM_153406, intron 13 of 15)	-16834.0	NM_009630	11540.0	Mm.333734	NM_009630	ENSMUSG00000020178	Adora2a	A2AAR|A2aR|AA2AR	adenosine A2a receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-83645445-4	chr17	83645346	83645546	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13551.0	NM_153512	225030.0	Mm.223506	NM_153512	ENSMUSG00000045053	Kcng3	KV6.3|Kv10.1a|Kv10.1b	potassium voltage-gated channel, subfamily G, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141413629-2	chr7	141413529	141413729	+	819.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172116, intron 1 of 7)	intron (NM_172116, intron 1 of 7)	496.0	NM_172116	213350.0	Mm.290953	NM_172116	ENSMUSG00000051007	Gatd1	BC023835|D230016J19Rik|Pddc1	glutamine amidotransferase like class 1 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-70933005-2	chr9	70932905	70933105	+	588.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001324473, intron 1 of 8)	MER97a|DNA|hAT-Tip100	1803.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-99524099-2	chr12	99523999	99524199	+	789.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39742.0	NR_136760	102639404.0	Mm.396324	NR_136760	ENSMUSG00000097917	Gm26839	-	predicted gene, 26839	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16015797-2	chr7	16015697	16015897	+	666.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-16302.0	NM_001081418	243842.0	Mm.440249	NM_001081418	ENSMUSG00000070808	Bicra	Gltscr1	BRD4 interacting chromatin remodeling complex associated protein	protein-coding	-0.355102099045913	-1.08800443761493	-1.10000538458774	-1.10823191762646	-1.11144624499335	-1.08540378234277	-1.09728863324636	-1.10783509528487	-2.90772050925769	0.391763856616344	1
Merged-chr18-77766363-2	chr18	77766263	77766463	+	636.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357531, intron 4 of 10)	PB1D10|SINE|Alu	1436.0	NM_146089	225745.0	Mm.39293	NM_146089	ENSMUSG00000041840	Haus1	BC024400|Ccdc5|HEI-C	HAUS augmin-like complex, subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-76406479-4	chr16	76406377	76406577	+	935.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32650.0	NM_001358238	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100408880-2	chr11	100408780	100408980	+	637.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_176830, exon 8 of 8)	3' UTR (NM_176830, exon 8 of 8)	5939.0	NM_176830	66180.0	Mm.4940	NM_176830	ENSMUSG00000006931	P3h4	1110036O03Rik|AI413214|Leprel4|Sc65	prolyl 3-hydroxylase family member 4 (non-enzymatic)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75566043-4	chr11	75565928	75566128	+	906.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199284, intron 9 of 13)	intron (NM_001199284, intron 9 of 13)	14599.0	NR_039553	100628624.0		NR_039553	ENSMUSG00000093100	Mir3971	mmu-mir-3971|mu-mir-3971	microRNA 3971	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-75829049-4	chr14	75828947	75829147	+	934.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15917.0	NR_045294	100043189.0	Mm.426329	NR_045294		Gm4285	-	predicted gene 4285	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-49000994-4	chr7	49000882	49001082	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111016, intron 2 of 38)	intron (NM_001111016, intron 2 of 38)	41909.0	NM_001111016	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116855880-2	chr11	116855780	116855980	+	577.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178620, intron 2 of 12)	ID_B1|SINE|B4	1880.0	NM_001361586	69900.0	Mm.348004	NM_178620	ENSMUSG00000020818	Mfsd11	2600014M03Rik	major facilitator superfamily domain containing 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135988041-2	chr4	135987941	135988141	+	618.333313	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025411)	promoter-TSS (NM_025411)	-797.0	NM_025411	66193.0	Mm.29131	NM_025411	ENSMUSG00000028669	Pithd1	1110049F12Rik|AA408179|Trp26	PITH (C-terminal proteasome-interacting domain of thioredoxin-like) domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76354111-2	chr15	76354011	76354211	+	732.799988	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001164608, exon 8 of 8)	3' UTR (NM_001164608, exon 8 of 8)	2817.0	NM_026859	68877.0	Mm.289680	NM_026859	ENSMUSG00000022553	Maf1	1110068E11Rik|AU042856	MAF1 homolog, negative regulator of RNA polymerase III	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-47439135-1	chr9	47439035	47439235	+	546.0	f0_balb.idr	Intergenic	B4A|SINE|B4	-91035.0	NM_001310841	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	-1.13799161856527	-1.11509962161431	-1.12611682695956	-0.600839935108385	-0.990754861597232	-1.11271214725662	-1.12362277315966	-1.13354676675577	-1.63747442377455	0.616904426498488	1
Merged-chr12-84009466-4	chr12	84009382	84009582	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_012006)	promoter-TSS (NM_012006)	-20.0	NM_012006	26897.0	Mm.1978	NM_012006	ENSMUSG00000072949	Acot1	ACH2|CTE-1|CTE-I|Cte1|D12Ucla1	acyl-CoA thioesterase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-122575902-4	chr6	122575841	122576041	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR23|LTR|ERV1	22132.0	NM_009645	11628.0	Mm.391503	NM_009645	ENSMUSG00000040627	Aicda	Aid|Arp2	activation-induced cytidine deaminase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-57148275-4	chr9	57148158	57148358	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357409)	promoter-TSS (NM_001357409)	47.0	NM_028347	72774.0	Mm.35749	NM_028347	ENSMUSG00000032298	Neil1	2810450N13Rik|NEH1|Nei1	nei endonuclease VIII-like 1 (E. coli)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-87634286-4	chr16	87634154	87634354	+	897.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64700.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16047114-4	chr7	16047056	16047256	+	879.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24689.0	NM_001347559	666528.0	Mm.290718	NM_001099277	ENSMUSG00000078796	Zfp541	EG666528|Znf541	zinc finger protein 541	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191186002-7	chr1	191185931	191186131	+	973.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2698.0	NM_007498	11910.0	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118132999-2	chr11	118132899	118133099	+	857.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-3780.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-8072727-4	chr10	8072594	8072794	+	941.216675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER31B|LTR|ERV1	-116571.0	NM_138667	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	1.24193046830235	0.738940259473291	1.36520370098657	0.717394678937005	1.3531664577566	1.14579474179985	1.68139924648225	0.719050908741641	0.916834393335957	0.536394378403319	0.953323426463389
Merged-chr5-115193520-2	chr5	115193422	115193622	+	682.716675	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310712, intron 1 of 5)	CpG	859.0	NM_001310712	29867.0	Mm.38551	NM_013879	ENSMUSG00000029544	Cabp1	caldendrin	calcium binding protein 1	protein-coding	-0.856791791219385	-0.976181987013026	-0.675966170723785	-0.989026295971327	-0.991669635549255	-0.973744692938031	-0.984882992196558	-0.695568416970149	-0.500690519984806	0.86721059602143	1
Merged-chr11-98790003-3	chr11	98789921	98790121	+	870.611145	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-5495.0	NM_001361931	74026.0	Mm.258352	NM_028722	ENSMUSG00000052915	Msl1	2810017F12Rik|4121402D02Rik|4930463F05Rik|AA682082|Msl-1	male specific lethal 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-33261442-4	chr4	33261355	33261555	+	999.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12668.0	NM_001033225	108767.0	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-3355066-2	chr18	3354966	3355166	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_033457, intron 1 of 1)	MTC|LTR|ERVL-MaLR	-17477.0	NM_001110852	12916.0	Mm.5244	NM_013498	ENSMUSG00000063889	Crem	ICER|ICERI	cAMP responsive element modulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-54612058-4	chr18	54611888	54612088	+	776.625	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045400, intron 1 of 2)	intron (NR_045400, intron 1 of 2)	244.0	NR_045400	328957.0	Mm.402781	NR_045400		9330117O12Rik	9330117O12	RIKEN cDNA 9330117O12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72392123-2	chr6	72392023	72392223	+	609.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-1456.0	NM_016794	22320.0	Mm.1838	NM_016794	ENSMUSG00000050732	Vamp8	AU041171|Edb|endobrevin	vesicle-associated membrane protein 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-137119036-3	chr2	137118938	137119138	+	977.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2518.0	NM_013822	16449.0	Mm.22398	NM_013822	ENSMUSG00000027276	Jag1	ABE2|Gsfabe2|Htu|Ozz|Ser-1	jagged 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65545804-4	chr9	65545688	65545888	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34299.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-33887257-4	chr2	33887152	33887352	+	902.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175184, intron 1 of 9)	CpG	694.0	NM_175184	72543.0	Mm.254914	NM_175184	ENSMUSG00000038740	Mvb12b	2610200O14Rik|2610528K11Rik|AI414895|Fam125b	multivesicular body subunit 12B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75569008-2	chr11	75568908	75569108	+	562.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199284, intron 11 of 13)	PB1D7|SINE|Alu	17579.0	NR_039553	100628624.0		NR_039553	ENSMUSG00000093100	Mir3971	mmu-mir-3971|mu-mir-3971	microRNA 3971	ncRNA	0.873357113272577	1.90660974274807	1.60703117478824	1.27987613931425	0.876912227154008	1.9226994530819	1.62094693765227	1.28631040301488	0.038246453591742	0.976327805407259	0.998431161219273
Merged-chr3-9783335-3	chr3	9783256	9783456	+	766.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053182, intron 1 of 7)	intron (NM_053182, intron 1 of 7)	50323.0	NM_053182	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	0.743088308545248	1.62815697464136	0.773745020989166	0.762381039986465	1.43353775325532	1.75278141045655	1.32709878914347	1.28119279029084	1.64131412666264	0.25186058509012	0.749708063160253
Merged-chr7-24175104-4	chr7	24175018	24175218	+	750.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001029933)	promoter-TSS (NM_001029933)	96.0	NM_001029933	232966.0	Mm.435485	NM_001029933	ENSMUSG00000068962	Zfp114	Gm1957|Zfp110	zinc finger protein 114	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-23745610-4	chr13	23745504	23745704	+	985.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175653)	promoter-TSS (NM_175653)	-83.0	NM_175653	319148.0	Mm.262517	NM_175653	ENSMUSG00000069310	Hist1h3c	H3-143	histone cluster 1, H3c	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-33668829-1	chr8	33668729	33668929	+	570.0	f1_c57bl6.idr	intron (NM_010344, intron 1 of 12)	L1_Mus2|LINE|L1	15591.0	NM_010344	14782.0	Mm.283573	NM_010344	ENSMUSG00000031584	Gsr	AI325518|D8Ertd238e|Gr-1|Gr1	glutathione reductase	protein-coding	-0.160345792192389	0.208024699230717	0.516967352363638	0.26996741553042	-0.159418706257933	-0.144391206148399	-0.149283934532243	-0.153456986514209	-3.8125261187448	0.096799031271314	1
Merged-chr3-88460154-6	chr3	88460041	88460241	+	999.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163489, intron 1 of 14)	intron (NM_001163489, intron 1 of 14)	-1040.0	NM_001163490	20351.0	Mm.439752	NM_013658	ENSMUSG00000028064	Sema4a	AI132332|SemB|Semab	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-15284628-4	chr3	15284531	15284731	+	987.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47671.0	NM_001076679	751864.0	Mm.431296	NM_001076679	ENSMUSG00000078783	Gm9733	-	predicted gene 9733	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-93273114-2	chr15	93273014	93273214	+	769.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346785, intron 1 of 7)	intron (NM_001346785, intron 1 of 7)	2065.0	NM_001357006	223827.0	Mm.22819	NM_001033275	ENSMUSG00000036197	Gxylt1	Glt8d3|Gm1228|Gm87	glucoside xylosyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-45091127-2	chr2	45091027	45091227	+	882.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355291, intron 2 of 9)	intron (NM_001355291, intron 2 of 9)	19150.0	NM_001289521	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-73509949-4	chr14	73509840	73510040	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026119)	promoter-TSS (NM_026119)	-109.0	NM_026119	67381.0	Mm.282888	NM_026119	ENSMUSG00000022109	Med4	2410046H15Rik|DRIP36|HSPC126|TRAP36|Vdirp|Vdrip	mediator complex subunit 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-105023551-4	chr3	105023435	105023635	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030249, intron 3 of 5)	intron (NM_030249, intron 3 of 5)	29418.0	NM_001163332	80281.0	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-47502830-2	chr4	47502730	47502930	+	993.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28169.0	NM_024171	66212.0	Mm.20188	NM_024171	ENSMUSG00000053317	Sec61b	1190006C12Rik|AI326121|AW122942	Sec61 beta subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-82348339-3	chr15	82348264	82348464	+	865.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026914, intron 2 of 2)	intron (NM_026914, intron 2 of 2)	2318.0	NM_026914	69029.0	Mm.260042	NM_026914	ENSMUSG00000022452	Smdt1	1500032L24Rik|Emre	single-pass membrane protein with aspartate rich tail 1	protein-coding	0.11937444366349	-0.184551792642862	-0.187740473459204	-0.190172653641305	0.12659112179799	-0.183827360586039	-0.0358861174598824	0.172087625043758	1.37505906750171	0.550386709034786	1
Merged-chr4-114983340-4	chr4	114983188	114983388	+	871.4833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025647, intron 1 of 5)	intron (NM_025647, intron 1 of 5)	3940.0	NM_025647	66588.0	Mm.294159	NM_025647	ENSMUSG00000028719	Cmpk1	0610011D08Rik|CK|Cmpk|UMP-CMPk	cytidine monophosphate (UMP-CMP) kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117481997-4	chr8	117481920	117482120	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16255.0	NM_172285	234779.0	Mm.192699	NM_172285	ENSMUSG00000034330	Plcg2	PLC-gamma-2|PLCgamma2|Plcg-2	phospholipase C, gamma 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-72586353-2	chr5	72586253	72586453	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001024147, exon 2 of 3)	exon (NM_001024147, exon 2 of 3)	1197.0	NM_001024147	545758.0	Mm.332426	NM_001024147	ENSMUSG00000060204	Gm5868	EG545758	predicted gene 5868	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-23305430-2	chr16	23305330	23305530	+	600.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252506, intron 1 of 6)	intron (NM_001252506, intron 1 of 6)	14960.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-118234813-2	chr14	118234713	118234913	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_177753, exon 1 of 1)	exon (NM_177753, exon 1 of 1)	-1419.0	NR_131969	105245869.0	Mm.460408	NR_131969	ENSMUSG00000090534	LOC105245869	-	uncharacterized LOC105245869	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-79624407-2	chr11	79624307	79624507	+	559.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175543, intron 3 of 14)	intron (NM_175543, intron 3 of 14)	-1244.0	NR_003283	790912.0	Mm.447313	NR_003283	ENSMUSG00000087434	Rab11fip4os1	Gm11202	RAB11 family interacting protein 4 (class II), opposite strand 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-79577940-4	chr11	79577841	79578041	+	843.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010897, intron 57 of 57)	intron (NM_010897, intron 57 of 57)	-13271.0	NM_175543	268451.0	Mm.130656	NM_175543	ENSMUSG00000017639	Rab11fip4	A730072L08Rik|RAB11-FIP4|mKIAA1821	RAB11 family interacting protein 4 (class II)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-33371466-4	chr2	33371345	33371545	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290572)	promoter-TSS (NM_001290572)	49.0	NM_001290570	241308.0	Mm.274249	NM_175211	ENSMUSG00000038831	Ralgps1	5830418G11Rik|AI853783|AI854138|RALGEF2|RALGPS1A|RalGEF 2|mKIAA0351	Ral GEF with PH domain and SH3 binding motif 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-58326114-2	chr15	58326014	58326214	+	686.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1945.0	NM_177755	268807.0	Mm.124498	NM_177755	ENSMUSG00000022357	Klhl38	8230402K04Rik	kelch-like 38	protein-coding	0.513281575972005	1.21193176292879	0.236422655687134	0.562314881004457	0.746357724276315	0.245993697534105	0.238152189243848	0.23141192317542	-1.76324834478805	0.354704942210079	1
Merged-chr12-91710712-4	chr12	91710613	91710813	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 4 of 6)	L1Md_A|LINE|L1	75723.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171767162-3	chr1	171767088	171767288	+	751.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013730)	promoter-TSS (NM_013730)	56.0	NM_001360898	27218.0	Mm.103648	NM_013730	ENSMUSG00000015316	Slamf1	4933415F16|AA177906|CD150|CDw150|ESTM51|IPO-3|Slam	signaling lymphocytic activation molecule family member 1	protein-coding	2.48966042785664	2.08468839011682	2.29346503173467	2.10704583738421	2.24433719091569	1.92082998124672	2.87267419437701	2.11731713215847	0.21419286555575	0.800195336352039	0.998431161219273
Merged-chr11-98202184-1	chr11	98202084	98202284	+	578.5	f0_balb.idr	Intergenic	Intergenic	-1121.0	NM_001109628	69131.0	Mm.260516	NM_026952	ENSMUSG00000003119	Cdk12	1810022J16Rik|AI646528|Crk7|Crkrs|D11Ertd752e|Pksc	cyclin-dependent kinase 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-22007640-2	chr16	22007540	22007740	+	899.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	-1844.0	NM_029457	75826.0	Mm.297431	NM_029457	ENSMUSG00000022855	Senp2	2310007L05Rik|4930538C18Rik|AI646780|AW554757|Smt3ip2|SuPr-1|mKIAA1331	SUMO/sentrin specific peptidase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-3347322-1	chr11	3347222	3347422	+	604.0	f0_balb.idr	intron (NM_001034030, intron 9 of 11)	intron (NM_001034030, intron 9 of 11)	8819.0	NM_001034030	16886.0	Mm.124176	NM_010718	ENSMUSG00000020451	Limk2	Limk-2|whe	LIM motif-containing protein kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-138207426-3	chr5	138207325	138207525	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13111.0	NM_177878	330216.0	Mm.19719	NM_177878	ENSMUSG00000049285	Mblac1	-	metallo-beta-lactamase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-95550143-2	chr10	95550043	95550243	+	774.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358996, intron 3 of 4)	(CA)n|Simple_repeat|Simple_repeat	9178.0	NR_037212	100526463.0		NR_037212	ENSMUSG00000092867	Mir3058	mir-3058|mmu-mir-3058	microRNA 3058	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-88084434-1	chr16	88084334	88084534	+	659.0	f1_balb.idr	intron (NM_146072, intron 1 of 16)	intron (NM_146072, intron 1 of 16)	175163.0	NR_155304	105246151.0	Mm.449986	NR_155304		4930590A17Rik	-	RIKEN cDNA 4930590A17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76285685-4	chr15	76285607	76285807	+	922.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028852, intron 4 of 4)	B2_Mm2|SINE|B2	5261.0	NR_037240	100526548.0		NR_037240	ENSMUSG00000093169	Mir3079	mmu-mir-3079	microRNA 3079	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-149785309-3	chr4	149785264	149785464	+	733.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11097.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-22845642-3	chr14	22845531	22845731	+	912.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028275, intron 6 of 6)	intron (NM_028275, intron 6 of 6)	248940.0	NR_033550	791307.0	Mm.364384	NR_033550	ENSMUSG00000068680	Gm10248	-	predicted gene 10248	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-32198921-4	chr9	32198835	32199035	+	965.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195632, intron 9 of 21)	(CAAAA)n|Simple_repeat|Simple_repeat	-25314.0	NM_177379	330914.0	Mm.46683	NM_177379	ENSMUSG00000041444	Arhgap32	3426406O18Rik|Gc-gap|Grit|Px-rics|Rics|mKIAA0712|p200Rhogap|p250Gap	Rho GTPase activating protein 32	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-139229405-3	chr4	139229293	139229493	+	796.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	35282.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	-0.077700683997547	-0.320596916296722	-0.324545925009641	0.0809785965249963	-0.331860991316811	-0.319704825945801	0.233603271312279	-0.327053157461802	-0.0637817513910415	0.979619759659327	1
Merged-chr12-112800631-4	chr12	112800505	112800705	+	905.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8370.0	NM_145450	217887.0	Mm.186678	NM_145450	ENSMUSG00000037594	BC022687	AW050009|C130001I08Rik|Clba1|Flj20080	cDNA sequence BC022687	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-55022176-2	chr13	55022076	55022276	+	807.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001206392)	promoter-TSS (NM_001206392)	-791.0	NM_001033245	212032.0	Mm.267479	NM_001033245	ENSMUSG00000025877	Hk3	HK III|HK-III	hexokinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-56935398-1	chr19	56935298	56935498	+	545.0	f1_balb.idr	intron (NM_001177796, intron 6 of 19)	intron (NM_001177796, intron 6 of 19)	60982.0	NM_172840	240675.0	Mm.129534	NM_172840	ENSMUSG00000025082	Vwa2	Amaco	von Willebrand factor A domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180941176-2	chr1	180941076	180941276	+	679.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1342.0	NM_144794	208795.0	Mm.185518	NM_144794	ENSMUSG00000026519	Tmem63a	BC014795|Tmem64a	transmembrane protein 63a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-78142219-4	chr18	78142115	78142315	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001171011)	promoter-TSS (NM_001171011)	-96.0	NM_001171011	108052.0	Mm.33832	NM_028122	ENSMUSG00000059336	Slc14a1	2610507K20Rik|3021401A05Rik|UT-B|Utb1	solute carrier family 14 (urea transporter), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-79516454-4	chr14	79516367	79516567	+	797.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286411, intron 1 of 8)	intron (NM_001286411, intron 1 of 8)	793.0	NM_001286411	13709.0	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-121075097-4	chr7	121074983	121075183	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030691)	promoter-TSS (NM_030691)	-553.0	NM_030691	80719.0	Mm.160384	NM_030691	ENSMUSG00000035004	Igsf6	-	immunoglobulin superfamily, member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-172147399-2	chr1	172147299	172147499	+	735.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153555)	promoter-TSS (NM_153555)	-616.0	NR_151641	98193.0	Mm.159915	NM_153555	ENSMUSG00000026554	Dcaf8	AA408877|AA433120|AA792214|AU018973|C76055|D1Dau35e|D1Ucla4|H326|Wdr42a	DDB1 and CUL4 associated factor 8	protein-coding	-0.863843029122322	-0.521340798413124	-0.858562238259313	-0.706543124314133	-0.863355650869908	-0.851202555094677	-0.688066340183354	-0.7040291222304	-0.64162697369612	0.813348688713874	1
Merged-chr19-4124651-2	chr19	4124551	4124751	+	881.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016666, intron 1 of 6)	intron (NM_016666, intron 1 of 6)	1207.0	NM_016666	11632.0	Mm.10433	NM_016666	ENSMUSG00000024847	Aip	AA408703|AW476050|Ara9|D19Bwg1412e|Fkbp16|Xap2	aryl-hydrocarbon receptor-interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-127338401-6	chr2	127338354	127338554	+	780.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172539)	promoter-TSS (NM_172539)	-185.0	NM_172539	215095.0	Mm.31313	NM_172539	ENSMUSG00000050468	Astl	7420700F21|C87576|Sas1b	astacin-like metalloendopeptidase (M12 family)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-113305825-2	chr6	113305725	113305925	+	575.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_170673)	TTS (NM_170673)	-1312.0	NM_030178	78783.0	Mm.356059	NM_030178	ENSMUSG00000001632	Brpf1	4833438B11Rik|4930540D11Rik|Brpf2	bromodomain and PHD finger containing, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-92851144-1	chr8	92851044	92851244	+	788.0	f1_c57bl6.idr	intron (NM_008610, intron 12 of 12)	(TG)n|Simple_repeat|Simple_repeat	-4189.0	NM_173014	270084.0	Mm.21463	NM_173014	ENSMUSG00000033192	Lpcat2	1-AGPAT 11|A330042H22|Aytl1|Aytl1a|lpafat1|lysoPAFAT|lysoPAFAT/LPCAT2	lysophosphatidylcholine acyltransferase 2	protein-coding	0.761305882053888	0.410994784384286	0.853490268017547	0.398561236301572	0.770060683236038	1.02737993022548	0.405525365342534	0.703813456282151	0.721293124514536	0.675498340369999	1
Merged-chr3-69127762-4	chr3	69127659	69127859	+	979.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008467)	promoter-TSS (NM_008467)	-667.0	NM_008467	16649.0	Mm.30601	NM_008467	ENSMUSG00000027782	Kpna4	1110058D08Rik|IPOA3	karyopherin (importin) alpha 4	protein-coding	1.62036872086649	1.08404018798398	1.05558556010227	1.31883676199858	1.37010753537477	1.54887147692576	1.36870807511805	0.853389427102711	0.0605365554313845	0.962407805016314	0.998431161219273
Merged-chr19-41773814-3	chr19	41773710	41773910	+	960.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027667, intron 10 of 11)	MTD|LTR|ERVL-MaLR	26849.0	NR_040320	100502871.0	Mm.394485	NR_040320		Gm19424	-	predicted gene, 19424	ncRNA	1.12928494263212	1.72500370725549	0.459136620209174	1.21967916487325	0.435117866193115	0.474415094055163	0.688311106436442	0.451036843801873	-3.97853692968283	0.0212879788621946	0.187070193155721
Merged-chr17-71493499-1	chr17	71493399	71493599	+	679.0	f1_c57bl6.idr	Intergenic	Intergenic	-18156.0	NM_028887	74355.0	Mm.194450	NM_028887	ENSMUSG00000024054	Smchd1	4931400A14Rik|AW554188|MommeD1|mKIAA0650	SMC hinge domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-102513868-5	chr4	102513791	102513991	+	715.06665	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019840, intron 5 of 14)	MER44B|DNA|TcMar-Tigger	-56169.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-119394174-2	chr8	119394074	119394274	+	548.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019966)	promoter-TSS (NM_019966)	-718.0	NM_019966	56690.0	Mm.423037	NM_019966	ENSMUSG00000074064	Mlycd	AI324784|Mcd	malonyl-CoA decarboxylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131561572-2	chr1	131561472	131561672	+	774.791626	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A3|LTR|ERVL-MaLR	33669.0	NM_175382	108900.0	Mm.31278	NM_175382	ENSMUSG00000055184	Fam72a	2700049P18Rik|P17	family with sequence similarity 72, member A	protein-coding	2.01085999102128	2.73008828063577	3.6436868181246	2.28822822894269	1.85130749391645	2.61572814220499	3.30668791210918	2.97534564097897	-0.0763747168817807	0.924026667002947	0.998431161219273
Merged-chr10-20893564-4	chr10	20893485	20893685	+	943.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58962.0	NM_026203	52906.0	Mm.253280	NM_026203	ENSMUSG00000019986	Ahi1	1700015F03Rik|Ahi-1|D10Bwg0629e	Abelson helper integration site 1	protein-coding	1.44995478736187	0.838541153699736	2.60815305459434	1.7839316510737	1.4644714965842	0.843400824943114	0.821419508732184	1.2427022552913	-2.23104687679245	0.0913227757001072	0.467444822034935
Merged-chr18-56753664-4	chr18	56753563	56753763	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010721)	TTS (NM_010721)	45850.0	NM_010721	16906.0	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30553566-4	chr7	30553472	30553672	+	910.4583130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_128568)	TTS (NR_128568)	270.0	NM_001012401	243912.0	Mm.34885	NM_001012401	ENSMUSG00000036854	Hspb6	AA387366|Gm479|Hsp20	heat shock protein, alpha-crystallin-related, B6	protein-coding	0.702061545685213	1.52005173088772	0.548156735485097	0.538209327144588	0.708113660035179	1.53550004556223	0.550971591717522	1.30273228371866	0.74030306126162	0.642019708919962	0.982599433509505
Merged-chr10-24633232-2	chr10	24633132	24633332	+	928.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2A|LINE|L1	37790.0	NM_010217	14219.0	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-69509595-2	chr18	69509492	69509692	+	738.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 5 of 19)	intron (NM_001361128, intron 5 of 19)	163432.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-23953214-2	chr13	23953114	23953314	+	680.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_145399)	TTS (NM_145399)	18752.0	NM_175658	319163.0	Mm.377876	NM_175658	ENSMUSG00000060081	Hist1h2aa	Th2a	histone cluster 1, H2aa	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28373401-4	chr7	28373301	28373501	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001083912)	promoter-TSS (NM_001083912)	-739.0	NM_001083912	101497.0	Mm.235700	NM_138752	ENSMUSG00000037552	Plekhg2	AI194308|Clg|Cslg	pleckstrin homology domain containing, family G (with RhoGef domain) member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165923197-3	chr2	165923098	165923298	+	867.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28B|LTR|ERVL	-38360.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	1.52549800113482	2.44497476982694	1.17973166365262	1.93060285682751	2.27237211835218	1.72702926895068	1.66863946248333	3.06995354883837	1.09886170673443	0.281590590297045	0.784244174183833
Merged-chr7-80965987-2	chr7	80965887	80966087	+	707.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-18437.0	NM_019951	56529.0	Mm.43760	NM_019951	ENSMUSG00000025724	Sec11a	1810012E07Rik|18kDa|Sec11l1|Sid2895p|Spc18|sid2895	SEC11 homolog A, signal peptidase complex subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-84686787-2	chr18	84686687	84686887	+	854.125	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-1085.0	NM_023149	66054.0	Mm.29646	NM_023149	ENSMUSG00000024644	Cndp2	0610010E05Rik|C76600|Cn2|Dip-2|Pep-1|Pep1	CNDP dipeptidase 2 (metallopeptidase M20 family)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128697334-2	chr10	128697234	128697434	+	564.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_016756)	TTS (NM_016756)	-1066.0	NM_177411	19344.0	Mm.12815	NM_011229	ENSMUSG00000000711	Rab5b	C030027M18Rik	RAB5B, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-17126212-4	chr19	17126235	17126435	+	738.3125	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181348, intron 9 of 19)	intron (NM_181348, intron 9 of 19)	170217.0	NM_181348	353211.0	Mm.257354	NM_181348	ENSMUSG00000039126	Prune2	6330414G02Rik|A230083H22Rik|A330102H22Rik|Bmcc1|mKIAA0367	prune homolog 2	protein-coding	0.545932865339133	1.58544734528747	0.576499434645384	0.56520249676905	0.904524435077047	1.6013097045961	1.52961814998598	0.56719219478925	1.15692903916974	0.478004251695146	0.928092227925527
Merged-chr12-80867191-3	chr12	80867085	80867285	+	938.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001242419, intron 3 of 6)	intron (NM_001242419, intron 3 of 6)	57262.0	NR_033786	67340.0	Mm.386790	NR_033786	ENSMUSG00000101912	1700052I22Rik	-	RIKEN cDNA 1700052I22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-5233864-3	chr6	5233754	5233954	+	737.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173006, intron 5 of 8)	intron (NM_173006, intron 5 of 8)	22379.0	NM_173006	269823.0	Mm.9122	NM_173006	ENSMUSG00000029759	Pon3	2810004E20|AI786302	paraoxonase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-49801679-4	chr16	49801588	49801788	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53966.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-155563518-4	chr4	155563430	155563630	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159637)	promoter-TSS (NM_001159637)	-285.0	NM_001159637	192185.0	Mm.28347	NM_138671	ENSMUSG00000029063	Nadk	4432404C02Rik|BC004012	NAD kinase	protein-coding	4.31025457410102	4.7431888419918	4.92153680718909	4.43342232360629	3.87729196019023	4.12729835685121	4.95489784868686	3.79077709005012	-0.447115237776647	0.29179887816427	0.796128548904676
Merged-chr11-75174399-2	chr11	75174299	75174499	+	927.3000490000001	f1_balb.idr|f1_c57bl6.idr	TTS (NR_029794)	TTS (NR_029794)	717.0	NR_029546	387150.0		NR_029546	ENSMUSG00000065537	Mir132	Mirn132|mir-132|mmu-mir-132	microRNA 132	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-156196761-4	chr2	156196686	156196886	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_172674, exon 1 of 18)	5' UTR (NM_172674, exon 1 of 18)	139.0	NM_172674	228829.0	Mm.427078	NM_172674	ENSMUSG00000038116	Phf20	6820402O20Rik	PHD finger protein 20	protein-coding	1.48587825279845	0.893782225925987	3.34395976231009	0.814972174423297	1.9636000450358	0.903122270541214	3.51293600013376	0.821342348526302	0.335504648591158	0.900937880597239	0.998431161219273
Merged-chr13-110062911-3	chr13	110062809	110063009	+	708.044434	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360099, intron 4 of 4)	intron (NM_001360099, intron 4 of 4)	159100.0	NR_035442	100316683.0		NR_035442	ENSMUSG00000084651	Mir1904	Mirn1904|mmu-mir-1904	microRNA 1904	ncRNA	0.783271006278531	1.75242211445754	0.823802957550626	0.808893595024688	1.30422818634829	2.17493184131731	1.69795136351995	1.37909899831154	1.95302131451117	0.151555021287903	0.604901564041577
Merged-chr17-23828510-2	chr17	23828410	23828610	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026305, intron 2 of 3)	intron (NM_026305, intron 2 of 3)	599.0	NM_026305	67673.0	Mm.153758	NM_026305	ENSMUSG00000055839	Elob	0610040H15Rik|Tceb2	elongin B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-87323572-2	chr6	87323472	87323672	+	553.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_054041, intron 1 of 17)	intron (NM_054041, intron 1 of 17)	12203.0	NM_054041	69538.0	Mm.232525	NM_054041	ENSMUSG00000033420	Antxr1	2310008J16Rik|2810405N18Rik|Antrx1|Tem8	anthrax toxin receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-48433280-2	chr9	48433180	48433380	+	798.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21064.0	NR_026561	667933.0	Mm.491076	NR_026561		Gm8884	EG667933	predicted gene 8884	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-122466283-3	chr3	122466196	122466396	+	828.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013867, intron 3 of 11)	intron (NM_013867, intron 3 of 11)	-17273.0	NM_001355264	29815.0	Mm.45815	NM_013867	ENSMUSG00000028121	Bcar3	AI131758|AND-34	breast cancer anti-estrogen resistance 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118105808-2	chr11	118105708	118105908	+	629.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001167746, intron 18 of 80)	B2_Mm1t|SINE|B2	23411.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-131886725-2	chr3	131886625	131886825	+	711.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D11|SINE|Alu	-198567.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	0.288993698698445	0.312854672577314	0.651359507759292	1.05586070874349	0.581893579073501	0.314598113065878	0.306807372282874	1.06482133519187	-0.0560323784469392	0.976238836437313	1
Merged-chr2-153117288-4	chr2	153117153	153117353	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001172117, intron 1 of 12)	intron (NM_001172117, intron 1 of 12)	8785.0	NM_010407	15162.0	Mm.715	NM_010407	ENSMUSG00000003283	Hck	AI849071|Bmk	hemopoietic cell kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-74206672-2	chr1	74206572	74206772	+	935.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_035449)	promoter-TSS (NR_035449)	-52.0	NR_035449	100316687.0		NR_035449	ENSMUSG00000087820	Mir1928	mmu-mir-1928	microRNA 1928	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-98533324-3	chr15	98533153	98533353	+	800.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153345, intron 2 of 10)	intron (NR_153345, intron 2 of 10)	1016.0	NM_001359827	69612.0	Mm.229107	NM_133714	ENSMUSG00000022992	Kansl2	2310037I24Rik|B930009D17	KAT8 regulatory NSL complex subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-6967836-4	chr17	6967747	6967947	+	995.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6691.0	NM_147155	380608.0	Mm.371734	NM_147155	ENSMUSG00000052031	Tagap1	2610315E15Rik|AA415005|FKSG15	T cell activation GTPase activating protein 1	protein-coding	3.923144886987	3.85218031897884	4.90664742502225	4.64514987167303	5.96816481970011	6.31242046427884	5.92451501897274	5.60382435619425	1.81732110054422	3.58937517105241e-08	3.6291002782826e-06
Merged-chr8-85064525-2	chr8	85064425	85064625	+	913.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026791, intron 4 of 9)	intron (NM_026791, intron 4 of 9)	2439.0	NR_106038	102465648.0		NR_106038	ENSMUSG00000099076	Mir7070	Gm27565|mmu-mir-7070	microRNA 7070	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-68725199-4	chr10	68725083	68725283	+	966.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177794, intron 1 of 5)	intron (NM_177794, intron 1 of 5)	1437.0	NM_177794	327766.0	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-161109748-2	chr2	161109632	161109832	+	788.0	f0_balb.idr|f1_balb.idr	promoter-TSS (NM_173368)	promoter-TSS (NM_173368)	-646.0	NR_126509	71389.0	Mm.122738	NM_173368	ENSMUSG00000057133	Chd6	5430439G14Rik|6330406J24Rik|CHD-6	chromodomain helicase DNA binding protein 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-5861049-4	chr2	5860949	5861149	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_016918, exon 4 of 10)	exon (NM_016918, exon 4 of 10)	1885.0	NR_152181	791411.0	Mm.442531	NR_152181		Gm13199	-	predicted gene 13199	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97296883-2	chr6	97296772	97296972	+	836.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 21 of 23)	intron (NM_145148, intron 21 of 23)	-44092.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	2.13583490025581	1.29400600251799	1.26043112849273	1.85812419589414	2.34873517069437	2.42919972579055	2.5550459589878	2.98477640048904	2.19587118022199	0.0226865467442076	0.195447478102204
Merged-chr4-99177463-4	chr4	99177374	99177574	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16460.0	NM_175029	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	5.19809800907997	4.6409161782696	4.59780731297537	5.47542905009989	4.87668842845101	4.61710529685527	4.81824053866129	4.76696706448115	-0.317361988862158	0.359805677296265	0.856306289008338
Merged-chr2-154712414-4	chr2	154712327	154712527	+	838.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55401.0	NM_029362	75608.0	Mm.262480	NM_029362	ENSMUSG00000038467	Chmp4b	2010012F05Rik|C76846|Snf7-2	charged multivesicular body protein 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-3129088-1	chr11	3128988	3129188	+	1000.0	f0_balb.idr	non-coding (NR_003517, exon 4 of 7)	non-coding (NR_003517, exon 4 of 7)	5067.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-12284197-4	chr14	12284088	12284288	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146051)	promoter-TSS (NM_146051)	-15.0	NM_001284384	218734.0	Mm.44068	NM_146051	ENSMUSG00000033111	3830406C13Rik	-	RIKEN cDNA 3830406C13 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-22361496-6	chr17	22361349	22361549	+	996.2222289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_176962)	promoter-TSS (NM_176962)	-4.0	NM_001347330	224598.0	Mm.390945	NM_145484	ENSMUSG00000044501	Zfp758	BC021442	zinc finger protein 758	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-23991343-4	chr16	23991232	23991432	+	844.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2480.0	NM_009744	12053.0	Mm.347398	NM_009744	ENSMUSG00000022508	Bcl6	Bcl5	B cell leukemia/lymphoma 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-45819153-1	chr1	45819053	45819253	+	774.0	f0_balb.idr	intron (NM_028599, intron 16 of 20)	intron (NM_028599, intron 16 of 20)	23987.0	NM_028599	73674.0	Mm.270376	NM_028599	ENSMUSG00000025995	Wdr75	1300003A18Rik|2410118I19Rik|C77608	WD repeat domain 75	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-79671393-4	chr1	79671321	79671521	+	886.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183027, intron 1 of 4)	intron (NM_183027, intron 1 of 4)	551.0	NM_183027	252903.0	Mm.32409	NM_183027	ENSMUSG00000054702	Ap1s3	1190009B22|Jr2|[s]3A	adaptor-related protein complex AP-1, sigma 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135774967-2	chr5	135774867	135775067	+	856.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_029659, intron 1 of 8)	intron (NM_029659, intron 1 of 8)	3334.0	NM_001289554	76571.0	Mm.247666	NM_029659	ENSMUSG00000019178	Styxl1	1700011C14Rik|Dusp24|Mkstyx	serine/threonine/tyrosine interacting-like 1	protein-coding	-0.734697168562934	-1.28094420828655	-1.29131886204401	-1.29984091153697	-1.31008363841169	-1.2786959775384	-1.28897026783925	-1.29831546875223	-2.42902550944018	0.482518537989684	1
Merged-chr4-129812201-4	chr4	129812074	129812274	+	919.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER4B|LTR|ERVK	-8305.0	NM_008974	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-32179758-2	chr6	32179658	32179858	+	766.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175750, intron 24 of 31)	intron (NM_175750, intron 24 of 31)	129470.0	NM_029587	76382.0	Mm.23510	NM_029587	ENSMUSG00000029766	1700012A03Rik	AI429084	RIKEN cDNA 1700012A03 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-16657101-4	chr1	16656997	16657197	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_037998)	promoter-TSS (NR_037998)	22.0	NM_001310470	67923.0	Mm.289248	NM_026456	ENSMUSG00000079658	Eloc	2610043E24Rik|2610301I15Rik|AA407206|AI987979|AW049146|Tceb1	elongin C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-135535488-4	chr1	135535373	135535573	+	994.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173437, intron 2 of 28)	intron (NM_173437, intron 2 of 28)	49882.0	NM_173437	215690.0	Mm.34977	NM_173437	ENSMUSG00000009418	Nav1	9530089B19|9930003A20Rik|C230080M11Rik|Gm38399|Pomfil3|Unc53h1|mKIAA1151|steerin-1	neuron navigator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-6326228-6	chr15	6326145	6326345	+	823.555542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001008702, intron 1 of 13)	intron (NM_001008702, intron 1 of 13)	26456.0	NM_001008702	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-123529683-4	chr9	123529576	123529776	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030692)	promoter-TSS (NM_030692)	-77.0	NM_001357485	83493.0	Mm.273671	NM_030692	ENSMUSG00000025240	Sacm1l	SAC1|Sac1p|mKIAA0851	SAC1 suppressor of actin mutations 1-like (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-76228765-2	chr16	76228665	76228865	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	106152.0	NR_040575	78215.0	Mm.243885	NR_040575		4930578N18Rik	-	RIKEN cDNA 4930578N18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-16874360-2	chr10	16874260	16874460	+	729.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	221422.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-88867318-3	chr15	88867227	88867427	+	827.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5133.0	NM_145478	223775.0	Mm.400129	NM_145478	ENSMUSG00000035828	Pim3	BC026639|Kid1	proviral integration site 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46350503-2	chr19	46350403	46350603	+	572.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1515.0	NR_040418	75579.0	Mm.436708	NR_040418		2310034G01Rik	-	RIKEN cDNA 2310034G01 gene	ncRNA	-0.413270832553205	0.248879758316469	-0.403519686790488	-0.4071766335812	-0.41236239857827	0.260274020124072	-0.402476173372258	-0.406537021983025	0.0394809277679939	0.98817139586833	1
Merged-chr13-108268416-4	chr13	108268315	108268515	+	886.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029001, intron 3 of 7)	intron (NM_029001, intron 3 of 7)	-47922.0	NM_178683	218581.0	Mm.32318	NM_178683	ENSMUSG00000021697	Depdc1b	9830132O03|AW260467|XTP1	DEP domain containing 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-117344116-4	chr2	117344021	117344221	+	937.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1244.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100497115-3	chr7	100497023	100497223	+	843.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011671, exon 4 of 8)	exon (NM_011671, exon 4 of 8)	3765.0	NM_011671	22228.0	Mm.171378	NM_011671	ENSMUSG00000033685	Ucp2	Slc25a8|UCP 2|UCPH	uncoupling protein 2 (mitochondrial, proton carrier)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167769944-4	chr2	167769844	167770044	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	78767.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-26902954-4	chr2	26902834	26903034	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009298)	promoter-TSS (NM_009298)	-47.0	NM_009298	20935.0	Mm.245577	NM_009298	ENSMUSG00000036160	Surf6	D2Wsu129e|Surf-6	surfeit gene 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-113656102-4	chr2	113655974	113656174	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285459, intron 13 of 16)	intron (NM_001285459, intron 13 of 16)	-29016.0	NM_001287818	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	1.5680844177424	0.805548750124444	0.992067671249313	1.58059213399422	1.583204825587	0.808317410443403	0.99845516779009	1.26811319270318	-0.331145212771254	0.811864829483022	0.998431161219273
Merged-chr17-9031925-4	chr17	9031798	9031998	+	818.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43565.0	NM_001347544	66931.0	Mm.67591	NM_025851	ENSMUSG00000023873	1700010I14Rik	-	RIKEN cDNA 1700010I14 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-87337271-4	chr3	87337187	87337387	+	953.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-20594.0	NM_009690	11801.0	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	2.55726083499532	2.21346992596449	1.74033579403474	2.78677667252032	1.99014423843742	3.15983470442909	2.88940944255605	2.88573268116782	0.821009526361975	0.305295812086047	0.806769348156094
Merged-chr13-43774367-4	chr13	43774269	43774469	+	873.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10743.0	NM_009856	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-88522845-3	chr6	88522741	88522941	+	723.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	-4041.0	NM_016906	53421.0	Mm.28375	NM_016906	ENSMUSG00000030082	Sec61a1	AA408394|AA410007|Sec61a	Sec61 alpha 1 subunit (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111556218-3	chr12	111556127	111556327	+	901.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	15281.0	NR_033168	100316932.0	Mm.484709	NR_033168	ENSMUSG00000064493	Snora28	MBI-13	small nucleolar RNA, H/ACA box 28	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-66494595-4	chr8	66494507	66494707	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8077.0	NM_001357208	66282.0	Mm.294985	NM_025465	ENSMUSG00000025591	Tma16	1810029B16Rik	translation machinery associated 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-142920933-4	chr5	142920844	142921044	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14190.0	NM_007393	11461.0	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-118478377-4	chr5	118478287	118478487	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-82332.0	NM_001347445	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-47068486-4	chr19	47068371	47068571	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177342, intron 1 of 10)	CpG	723.0	NM_177342	226182.0	Mm.301522	NM_177342	ENSMUSG00000025049	Taf5	6330528C20Rik|AV117817	TATA-box binding protein associated factor 5	protein-coding	3.5007995325894	2.77442934532431	3.03530490719541	3.21843361274163	3.52815539727884	2.03066157717754	2.95095933460749	3.51905994314066	-0.0284674000799025	0.966007887767218	0.998431161219273
Merged-chr12-104186294-4	chr12	104186194	104186394	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28160.0	NM_009251	20715.0	Mm.312628	NM_009251		Serpina3g	2A2|AI119734|Spi2-1|Spi2/eb.1|Spi2A|spi2	serine (or cysteine) peptidase inhibitor, clade A, member 3G	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-56207317-4	chr9	56207225	56207425	+	906.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172924, exon 7 of 7)	exon (NM_172924, exon 7 of 7)	-46255.0	NM_019793	56434.0	Mm.28484	NM_019793	ENSMUSG00000032324	Tspan3	1700055K04Rik|TM4-A|Tm4sf8	tetraspanin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-128357614-2	chr6	128357514	128357714	+	604.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001326585, exon 3 of 3)	3' UTR (NM_001326585, exon 3 of 3)	-1763.0	NM_011657	22158.0	Mm.291783	NM_011657	ENSMUSG00000001521	Tulp3	2310022L06Rik|AI316887	tubby-like protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-16161627-4	chr1	16161521	16161721	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	55739.0	NM_133832	98711.0	Mm.274376	NM_133832	ENSMUSG00000025921	Rdh10	3110069K09Rik|4921506A21Rik|AI875664|AW549993|D1Ertd762e|m366Asp	retinol dehydrogenase 10 (all-trans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-56241989-2	chr12	56241889	56242089	+	806.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11254.0	NR_045048	100503961.0	Mm.136732	NR_045048	ENSMUSG00000112164	Gm19990	-	predicted gene, 19990	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-17004657-2	chr7	17004557	17004757	+	602.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_011155)	TTS (NM_011155)	10069.0	NM_001101535	434130.0	Mm.459162	NM_001101535	ENSMUSG00000041117	Ccdc8	-	coiled-coil domain containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-44432986-4	chr17	44432857	44433057	+	905.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	244385.0	NM_172621	224796.0	Mm.37666	NM_172621	ENSMUSG00000023959	Clic5	5730531E12Rik|B330005L24|Gm322|jbg|nmf318	chloride intracellular channel 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-107753357-2	chr13	107753257	107753457	+	561.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 5 of 14)	intron (NM_145456, intron 5 of 14)	65960.0	NR_045900	72257.0	Mm.234155	NR_045900	ENSMUSG00000102000	1700006H21Rik	-	RIKEN cDNA 1700006H21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-61176411-3	chr11	61176269	61176469	+	755.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1310.0	NM_001004143	216825.0	Mm.30602	NM_001004143	ENSMUSG00000042506	Usp22	AI427806	ubiquitin specific peptidase 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-40583738-4	chr9	40583635	40583835	+	950.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52352.0	NM_001357617	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	1.54093252464836	2.52406823408669	2.89586576627556	2.57041748688241	2.69484433987745	2.11804895537346	1.87217310163764	2.26612363269459	-0.426879877349656	0.625498560790167	0.980912176761026
Merged-chr16-91684930-2	chr16	91684830	91685030	+	679.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021720, intron 3 of 9)	intron (NM_021720, intron 3 of 9)	3798.0	NM_021720	60364.0	Mm.328698	NM_021720	ENSMUSG00000022960	Donson	1110025J21Rik|AI845729|ORF60	downstream neighbor of SON	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-65728860-2	chr17	65728760	65728960	+	682.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133685, intron 1 of 6)	intron (NM_133685, intron 1 of 6)	43892.0	NM_133685	106572.0	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-60977514-2	chr18	60977414	60977614	+	837.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177407, intron 14 of 17)	intron (NM_177407, intron 14 of 17)	13960.0	NM_001286809	12322.0	Mm.131530	NM_009792	ENSMUSG00000024617	Camk2a	CaMKII|R74975|mKIAA0968	calcium/calmodulin-dependent protein kinase II alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-113148790-2	chr12	113148690	113148890	+	759.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3222.0	NM_007763	12925.0	Mm.272368	NM_007763	ENSMUSG00000006360	Crip1	CRHP|CRP1|Crip	cysteine-rich protein 1 (intestinal)	protein-coding	-0.077700683997547	-0.320596916296722	-0.324545925009641	0.0809785965249963	-0.331860991316811	-0.319704825945801	0.233603271312279	-0.327053157461802	-0.0637817513910415	0.979619759659327	1
Merged-chr12-115808919-2	chr12	115808819	115809019	+	634.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-113125.0	NR_105810	102465205.0		NR_105810	ENSMUSG00000098336	Mir6388	Gm27925|mmu-mir-6388	microRNA 6388	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-21848989-4	chr14	21848889	21849089	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026965)	promoter-TSS (NM_026965)	-79.0	NM_026965	69156.0	Mm.11827	NM_026965	ENSMUSG00000021773	Comtd1	1810030M08Rik|MT773	catechol-O-methyltransferase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-69014252-2	chr2	69014152	69014352	+	615.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347161, intron 4 of 10)	intron (NM_001347161, intron 4 of 10)	-121548.0	NM_181547	329416.0	Mm.90047	NM_181547	ENSMUSG00000034738	Nostrin	Daip2|mDaIP2	nitric oxide synthase trafficker	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-72644793-1	chr14	72644693	72644893	+	568.0	f0_balb.idr	intron (NM_207636, intron 3 of 25)	intron (NM_207636, intron 3 of 25)	65210.0	NM_207636	319448.0	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-7914658-1	chr9	7914558	7914758	+	757.0	f0_balb.idr	Intergenic	Intergenic	-41488.0	NM_007464	11796.0	Mm.2026	NM_007464	ENSMUSG00000032000	Birc3	AW107670|Api1|Api2|Birc2|C-IAP2|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF49|cIAP-1|cIAP-2|cIAP1|cIAP2	baculoviral IAP repeat-containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171554116-1	chr1	171554016	171554216	+	1000.0	f0_balb.idr	Intergenic	Intergenic	-5077.0	NM_018729	18106.0	Mm.2299	NM_018729	ENSMUSG00000004709	Cd244	2B4|C9.1|F730046O15Rik|Ly90|NAIL|NKR2B4|Nmrk|SLAMF4	CD244 natural killer cell receptor 2B4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-23802948-2	chr18	23802770	23802970	+	987.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162941, intron 2 of 7)	intron (NM_001162941, intron 2 of 7)	-1100.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	1.64170556575779	1.33155708408861	1.89563632583613	1.07840997785516	1.33402193283018	1.98768657109295	0.889465205680773	0.875164927488125	-0.520922892621578	0.689745511180615	0.996533206832645
Merged-chr17-56849013-4	chr17	56848952	56849152	+	919.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039114, intron 10 of 14)	B1_Mus1|SINE|Alu	-18044.0	NM_027787	19725.0	Mm.102	NM_009056	ENSMUSG00000024206	Rfx2	5430432H19Rik	regulatory factor X, 2 (influences HLA class II expression)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-16089117-3	chr4	16089003	16089203	+	912.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	74540.0	NM_138952	192656.0	Mm.112765	NM_138952	ENSMUSG00000041135	Ripk2	2210420D18Rik|CARD3|CARDIAK|CCK|D4Bwg0615e|RICK|RIP2	receptor (TNFRSF)-interacting serine-threonine kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-120481766-2	chr6	120481666	120481866	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008359, exon 13 of 13)	exon (NM_008359, exon 13 of 13)	12041.0	NM_033567	94047.0	Mm.23088	NM_033567	ENSMUSG00000094626	Tmem121b	AW048664|Cecr6	transmembrane protein 121B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-10338923-2	chr3	10338823	10339023	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR17|LTR|ERVK	-3267.0	NM_001010834	241877.0	Mm.442146	NM_001010834	ENSMUSG00000058921	Slc10a5	Gm405|mP5	solute carrier family 10 (sodium/bile acid cotransporter family), member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-99139672-4	chr9	99139554	99139754	+	956.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029094, intron 1 of 23)	CpG	557.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-88430329-4	chr7	88430246	88430446	+	908.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028238)	promoter-TSS (NM_028238)	73.0	NM_028238	72433.0	Mm.276669	NM_028238	ENSMUSG00000030559	Rab38	2310011F14Rik|AU043391|cht	RAB38, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120303189-1	chr11	120303089	120303289	+	659.0	f1_balb.idr	Intergenic	Intergenic	44224.0	NR_105900	102465564.0		NR_105900	ENSMUSG00000098955	Mir6935	Gm27344|mmu-mir-6935	microRNA 6935	ncRNA	0.838481754754034	1.65147229589927	0.877168902533504	1.25523051823073	2.17967872837548	1.51902899969757	1.72528561408073	1.08257135083319	1.70039105269831	0.188770427282512	0.667315140405296
Merged-chr6-73223008-3	chr6	73222899	73223099	+	741.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1368.0	NM_001164669	330355.0	Mm.333166	NM_001164669	ENSMUSG00000052861	Dnah6	9830168K20|A730004I20Rik|Dnahc6|mKIAA1697|mdhc6	dynein, axonemal, heavy chain 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-119913201-4	chr1	119913120	119913320	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175106)	promoter-TSS (NM_175106)	-52.0	NM_175106	66343.0	Mm.49942	NM_175106	ENSMUSG00000036975	Tmem177	2300008B03Rik	transmembrane protein 177	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-136683850-4	chr6	136683745	136683945	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER74C|LTR|ERVL	-21952.0	NM_025806	66857.0	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	5.4241882468082	5.48348462502475	5.47256042725851	4.92125809960986	5.37126136616866	4.73344880841195	5.56330022281453	5.30859939979412	-0.0690923738426406	0.819864735049169	0.998431161219273
Merged-chr4-95216179-4	chr4	95216097	95216297	+	919.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MurERV4_19-int|LTR|ERVK	-163975.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-96666063-4	chr15	96665984	96666184	+	896.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23171.0	NM_001166458	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-12350579-3	chr2	12350493	12350693	+	896.361145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149732, intron 14 of 15)	intron (NR_149732, intron 14 of 15)	-48649.0	NM_001001309	241226.0	Mm.329997	NM_001001309	ENSMUSG00000026768	Itga8	AI447669	integrin alpha 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-103790230-3	chr3	103790102	103790302	+	897.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301304, intron 1 of 15)	intron (NM_001301304, intron 1 of 15)	1073.0	NM_001301306	15257.0	Mm.20827	NM_010432	ENSMUSG00000008730	Hipk1	1110062K04Rik|Myak	homeodomain interacting protein kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-79971456-4	chr17	79971358	79971558	+	787.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME3E|LINE|L1	-75335.0	NM_001286647	56298.0	Mm.175403	NM_019717	ENSMUSG00000059811	Atl2	2010110I21Rik|AA407293|AV334690|Aip-2|Arl6ip2	atlastin GTPase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70803883-4	chr11	70803786	70803986	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045526, intron 1 of 4)	intron (NM_001045526, intron 1 of 4)	8675.0	NM_001045526	327957.0	Mm.164325	NM_001045526	ENSMUSG00000057135	Scimp	A430084P05Rik	SLP adaptor and CSK interacting membrane protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-9774925-4	chr15	9774838	9775038	+	899.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR44-int|LTR|ERVK	-26070.0	NM_001305044	320277.0	Mm.127822	NM_177123	ENSMUSG00000072663	Spef2	C230086A09Rik	sperm flagellar 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-95718691-6	chr6	95718427	95718627	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011507, intron 1 of 10)	CpG	319.0	NM_011507	20917.0	Mm.371585	NM_011507	ENSMUSG00000061838	Suclg2	AF171077|AW556404|D6Wsu120e|G-SCS|GTPSCS|SCS-betaG	succinate-Coenzyme A ligase, GDP-forming, beta subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140806492-3	chr5	140806385	140806585	+	949.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010302, intron 1 of 3)	intron (NM_010302, intron 1 of 3)	23946.0	NM_010302	14673.0	Mm.370185	NM_010302	ENSMUSG00000000149	Gna12	AI414047|AI504261|Galpha12	guanine nucleotide binding protein, alpha 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115422181-4	chr11	115422119	115422319	+	912.625	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183285, intron 2 of 5)	intron (NM_183285, intron 2 of 5)	2093.0	NM_183285	70382.0	Mm.276299	NM_183285	ENSMUSG00000016940	Kctd2	2310012I15Rik	potassium channel tetramerisation domain containing 2	protein-coding	0.880511689854973	0.746988822756396	1.61806580710515	0.722528033995881	1.48037273306182	1.47164036888551	0.736327949435035	1.57220928389482	1.14779374099974	0.437087872426701	0.908450218277322
Merged-chr3-79883349-1	chr3	79883249	79883449	+	580.5	f0_balb.idr	Intergenic	Intergenic	-2581.0	NM_133187	68659.0	Mm.427274	NM_133187	ENSMUSG00000027955	Fam198b	1110032E23Rik|2210419I08Rik|AV011458|Ened	family with sequence similarity 198, member B	protein-coding	-0.800902393975908	-0.935897617394658	-0.946287014973534	-0.948736708533097	-0.952203366788739	-0.933120295379086	-0.2320457676838	-0.948308542095855	2.17412424731767	0.475677479681754	1
Merged-chr4-132795350-1	chr4	132795250	132795450	+	1000.0	f0_c57.idr	intron (NM_001033308, intron 1 of 5)	intron (NM_001033308, intron 1 of 5)	1014.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36242298-4	chr18	36242180	36242380	+	799.116699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38882.0	NM_008989	19290.0	Mm.231802	NM_008989	ENSMUSG00000043991	Pura	CAGER-1|Pur-alpha|ssCRE-BP	purine rich element binding protein A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-156720396-2	chr1	156720296	156720496	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1486.0	NM_145413	215015.0	Mm.229107	NM_145413	ENSMUSG00000033557	Fam20b	C530043G21Rik|mKIAA0475	family with sequence similarity 20, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36375367-2	chr18	36375267	36375467	+	965.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081365, intron 2 of 2)	intron (NM_001081365, intron 2 of 2)	26743.0	NM_001081365	66060.0	Mm.272527	NM_001081365	ENSMUSG00000046727	Cystm1	0610010O12Rik	cysteine-rich transmembrane module containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128715688-7	chr2	128715578	128715778	+	947.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 1 of 18)	intron (NM_008587, intron 1 of 18)	16763.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-14829669-2	chr9	14829569	14829769	+	661.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_018736, intron 17 of 19)	intron (NM_018736, intron 17 of 19)	-30541.0	NM_001310734	14608.0	Mm.4672	NM_010287	ENSMUSG00000031932	Gpr83	AW045253|Gir|Gpr72|RP105|RP39|RP82	G protein-coupled receptor 83	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-39451290-4	chr10	39451191	39451391	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122892, intron 2 of 12)	intron (NM_001122892, intron 2 of 12)	81492.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115347764-4	chr5	115347662	115347862	+	983.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007748, intron 2 of 2)	intron (NM_007748, intron 2 of 2)	1193.0	NM_007748	12861.0	Mm.43415	NM_007748	ENSMUSG00000041697	Cox6a1	VIaL	cytochrome c oxidase subunit VIa polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-35869730-4	chr1	35869628	35869828	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-198672.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-90954953-4	chr8	90954878	90955078	+	855.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177224, intron 3 of 39)	intron (NM_177224, intron 3 of 39)	22729.0	NM_001310530	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	1.07452986212084	1.34348952043042	1.1578727314837	1.12703918654949	0.785723429355552	1.35420878931786	1.16659004764518	1.57607507413398	0.348313263729313	0.789963397043055	0.998431161219273
Merged-chr1-58718704-2	chr1	58718604	58718804	+	654.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355056, intron 1 of 8)	intron (NM_001355056, intron 1 of 8)	5418.0	NM_001355056	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-182953317-2	chr1	182953217	182953417	+	649.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1471.0	NM_016928	53791.0	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-180725250-4	chr2	180725158	180725358	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183161)	promoter-TSS (NM_183161)	-81.0	NM_183161	228993.0	Mm.87189	NM_183161	ENSMUSG00000023393	Slc17a9	1700019H03Rik|BC019537|Vnut	solute carrier family 17, member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-92294305-1	chr5	92294205	92294405	+	585.0	f1_balb.idr	intron (NM_172713, intron 12 of 21)	L2a|LINE|L2	15719.0	NM_172713	231452.0	Mm.86564	NM_172713	ENSMUSG00000029415	Sdad1	4931421J16|AA591032|AW538460	SDA1 domain containing 1	protein-coding	-0.0524433018584448	-0.381305822190454	-0.384639549433619	-0.23900344143786	-0.390780001342142	-0.0513724465364663	-0.383906405321066	-0.107829315344326	0.339139160491232	0.887898941142943	1
Merged-chr14-8224082-4	chr14	8223993	8224193	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_027782)	TTS (NM_027782)	7845.0	NM_001305937	71393.0	Mm.292712	NM_027782	ENSMUSG00000021752	Kctd6	5430433B02Rik|AU044285	potassium channel tetramerisation domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-122607999-3	chr6	122607917	122608117	+	712.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008108, intron 1 of 1)	intron (NM_008108, intron 1 of 1)	2070.0	NM_008108	14562.0	Mm.299742	NM_008108	ENSMUSG00000030117	Gdf3	C78318|Gdf-3|Vgr-2|Vgr2|ecat9	growth differentiation factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-102223250-2	chr11	102223150	102223350	+	680.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001284248, intron 2 of 28)	intron (NM_001284248, intron 2 of 28)	6900.0	NR_106179	102465892.0		NR_106179	ENSMUSG00000098863	Mir8101	Gm27705|mmu-mir-8101	microRNA 8101	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-20885700-4	chr14	20885603	20885803	+	960.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43695.0	NM_009502	22330.0	Mm.279361	NM_009502	ENSMUSG00000021823	Vcl	9430097D22|AA571387|AI462105|AW545629	vinculin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-77799647-4	chr15	77799555	77799755	+	773.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022410, intron 3 of 40)	intron (NM_022410, intron 3 of 40)	42520.0	NM_022410	17886.0	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-65632108-4	chr18	65632002	65632202	+	986.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207255, intron 3 of 5)	intron (NM_207255, intron 3 of 5)	-12487.0	NR_105742	100526497.0		NR_105742	ENSMUSG00000077113	Mir466p	mmu-mir-466p	microRNA 466p	ncRNA	-0.338509611268986	-0.32350181297551	0.555243053334136	-0.332193017965932	-0.181804029916279	-0.322399564604779	-0.327319461976276	-0.00579317763530426	-1.38474238041559	0.569965119400337	1
Merged-chr6-145417107-1	chr6	145417007	145417207	+	555.0	f0_balb.idr	intron (NM_028742, intron 7 of 9)	intron (NM_028742, intron 7 of 9)	17818.0	NM_028742	74071.0	Mm.441497	NM_028742	ENSMUSG00000054966	Lmntd1	4933403M22Rik|AI482300|Ifltd1|Lmna-rs1|Lmna1	lamin tail domain containing 1	protein-coding	0.249040498379316	-0.21946684133793	-0.224381873007625	-0.228178582026106	-0.233551163979339	0.529052431734803	-0.0376978620598482	-0.227515005011086	1.1098629204168	0.643049293313543	1
Merged-chr5-130223545-2	chr5	130223445	130223645	+	645.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027854, intron 1 of 6)	ID_B1|SINE|B4	1210.0	NM_027854	71667.0	Mm.258508	NM_027854	ENSMUSG00000053094	Tmem248	0610007L01Rik|A930023A16Rik|AW557951|G430067H08Rik	transmembrane protein 248	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127596171-4	chr10	127596084	127596284	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 6 of 88)	intron (NM_008512, intron 6 of 88)	24964.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-139233142-4	chr4	139233067	139233267	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	39056.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-8313405-4	chr12	8313294	8313494	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021429)	promoter-TSS (NM_021429)	-39.0	NM_021429	58240.0	Mm.309954	NM_021429	ENSMUSG00000020605	Hs1bp3	-	HCLS1 binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-139189771-2	chr4	139189671	139189871	+	556.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3128.0	NM_009798	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	-2.18138529563533	-2.15523716995652	-2.1631445789866	-2.16963996020037	-2.05513010215571	-2.15352360143315	-2.16135451490766	-2.16847729006863	0.759018020146679	0.829933115115583	1
Merged-chr4-148608759-2	chr4	148608635	148608835	+	837.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001003893, intron 7 of 10)	intron (NM_001003893, intron 7 of 10)	6191.0	NM_001003893	17175.0	Mm.378962	NM_010767	ENSMUSG00000028979	Masp2	MASP-2|MAp19	mannan-binding lectin serine peptidase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-108756125-4	chr6	108756014	108756214	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-26945.0	NM_026011	67166.0	Mm.271178	NM_026011	ENSMUSG00000030105	Arl8b	2610313E07Rik|3100002J04Rik|Arl10c|gie1	ADP-ribosylation factor-like 8B	protein-coding	5.26429667529589	4.55952521302024	4.06976415393245	5.00770838712838	5.43826307909202	5.46131127089547	5.78304989870299	5.36937773688549	0.829243814635942	0.012351634721816	0.126230760981557
Merged-chr9-112079103-3	chr9	112079022	112079222	+	833.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362012, intron 18 of 19)	intron (NM_001362012, intron 18 of 19)	39589.0	NR_029823	723815.0		NR_029823	ENSMUSG00000065441	Mir128-2	Mirn128-2|Mirn128b|mir-128-2|mir-128b	microRNA 128-2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-121477462-4	chr9	121477296	121477496	+	636.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18298.0	NM_001284508	12424.0	Mm.2619	NM_031161	ENSMUSG00000032532	Cck	-	cholecystokinin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-32829818-2	chr12	32829756	32829956	+	766.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021524, intron 1 of 10)	intron (NM_021524, intron 1 of 10)	5740.0	NR_045032	100504486.0	Mm.440246	NR_045032		Gdap10	Gdap-ps	ganglioside-induced differentiation-associated-protein 10	ncRNA	0.400708810343154	-0.252368337554583	-0.257438558843195	-0.261361041042553	-0.266920532314154	-0.251227532908617	-0.256318961999385	0.494416719864219	0.268596084744395	0.916752121297152	1
Merged-chr4-95230646-4	chr4	95230559	95230759	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-178437.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	3.52220627938958	2.41910621395061	3.84952992365177	2.53629939909281	2.63437454185619	1.79853228186042	2.97233949597432	1.39282914775043	-1.56677027323957	0.0599661193740641	0.362881725075666
Merged-chr8-67632633-2	chr8	67632533	67632733	+	797.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	108779.0	NM_008674	17962.0	Mm.57193	NM_008674	ENSMUSG00000056426	Nat3	-	N-acetyltransferase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-20673908-4	chr10	20673820	20674020	+	909.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013875, intron 1 of 12)	intron (NM_013875, intron 1 of 12)	51158.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-24622757-4	chr10	24622656	24622856	+	949.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	27314.0	NM_010217	14219.0	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-53893213-3	chr11	53893123	53893323	+	949.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-1520.0	NM_011396	20520.0	Mm.42253	NM_011396	ENSMUSG00000018900	Slc22a5	Lstpl|Octn2|jvs	solute carrier family 22 (organic cation transporter), member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36710098-4	chr1	36710014	36710214	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146107)	promoter-TSS (NM_146107)	-189.0	NM_146107	226977.0	Mm.28521	NM_146107	ENSMUSG00000037351	Actr1b	2310066K23Rik|AA960180|AI851923|Arp1b	ARP1 actin-related protein 1B, centractin beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-63499117-3	chr17	63498975	63499175	+	898.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_015794, exon 1 of 9)	exon (NM_015794, exon 1 of 9)	1505.0	NM_015794	50758.0	Mm.136366	NM_015794	ENSMUSG00000023965	Fbxl17	6330576B01Rik|AI452053|BB073797|C130023C01Rik|Fbx13|Fbxo13	F-box and leucine-rich repeat protein 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69121583-5	chr11	69121572	69121772	+	868.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033041, intron 2 of 3)	intron (NM_033041, intron 2 of 3)	1219.0	NM_033041	84653.0	Mm.98505	NM_033041	ENSMUSG00000023781	Hes7	bHLHb37	hes family bHLH transcription factor 7	protein-coding	-0.194657207231117	-0.448018057116504	-0.451955955111625	-0.454990831151717	-0.459274568502942	-0.447129729230845	-0.270631053284438	0.266941283126978	1.92156288571089	0.456852946002303	1
Merged-chr5-148493199-4	chr5	148493071	148493271	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58502.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	4.65641899130627	4.70148772644687	4.50936963644465	4.1218635781247	4.78626729747875	4.2787448959638	4.14106570715624	4.20120798457453	-0.164194392286998	0.675734265814311	0.99440487726309
Merged-chr3-96595435-4	chr3	96595334	96595534	+	998.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1202.0	NM_001024851	545554.0	Mm.267664	NM_001024851	ENSMUSG00000049097	Ankrd34a	AW060394|Ankrd34	ankyrin repeat domain 34A	protein-coding	2.58751784859716	4.66833823964706	2.96318400398583	4.07025223736079	2.3285703502773	3.32708888688682	2.71837803104101	2.88811817897856	-1.49817634782081	0.0268390785100655	0.219356446841802
Merged-chr11-75155331-3	chr11	75155219	75155419	+	956.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001002764, intron 15 of 18)	intron (NM_001002764, intron 15 of 18)	12833.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-10535302-1	chr6	10535202	10535402	+	549.0	f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	439076.0	NR_033776	57866.0	Mm.4397	NR_033776		AA545190	-	EST AA545190	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-50137057-2	chr18	50136943	50137143	+	712.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008292, intron 2 of 23)	intron (NM_008292, intron 2 of 23)	8842.0	NM_008292	15488.0	Mm.277857	NM_008292	ENSMUSG00000024507	Hsd17b4	17-beta-HSD|17[b]-HSD|DBP|MFE-2|MFP2|MPF-2|Mfp-2|perMFE-2	hydroxysteroid (17-beta) dehydrogenase 4	protein-coding	2.25507962566326	2.82104837934038	3.21644026764484	2.86369804462362	3.2652040778473	1.95233016183049	3.15742894012253	3.42298098643986	0.426256498084953	0.551685966730983	0.959312344950351
Merged-chr5-92083837-4	chr5	92083734	92083934	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080795)	promoter-TSS (NM_001080795)	-90.0	NM_001080795	23881.0	Mm.290530	NM_011816	ENSMUSG00000029405	G3bp2	AA409541|E430034L04Rik|G3BP|mKIAA0660	GTPase activating protein (SH3 domain) binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-93520325-1	chr3	93520225	93520425	+	808.333313	f0_balb.idr	promoter-TSS (NM_016740)	promoter-TSS (NM_016740)	-171.0	NM_016740	20195.0	Mm.280038	NM_016740	ENSMUSG00000027907	S100a11	EMAPI|Emap1|S100a14|S100c|cal	S100 calcium binding protein A11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5847585-3	chr19	5847497	5847697	+	973.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2117.0	NR_003513	66961.0	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	0.31111219886568	0.335241044335983	0.327389613433193	1.16016089342171	0.603441562310886	0.337004186008039	0.818203476492349	0.892209432659553	0.392493851570392	0.833391195742774	1
Merged-chr9-123965009-2	chr9	123964909	123965109	+	665.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009912, intron 1 of 1)	intron (NM_009912, intron 1 of 1)	3683.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75160831-2	chr11	75160731	75160931	+	572.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001002764, intron 18 of 18)	intron (NM_001002764, intron 18 of 18)	7321.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	-1.36015291771705	-1.32842431658676	-1.33874579108173	-1.34722415754512	-1.35969949349639	-1.32618761000664	-1.33640923549635	-0.791042329471244	2.42373733289067	0.484013421080845	1
Merged-chr14-115054507-2	chr14	115054407	115054607	+	626.150024	f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	10080.0	NR_029816	751549.0		NR_029816	ENSMUSG00000076062	Mir92-1	Mirn92-1|mir-92a-1	microRNA 92-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85498853-2	chr12	85498757	85498957	+	629.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24967.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141651501-4	chr4	141651406	141651606	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347237, intron 1 of 18)	intron (NM_001347237, intron 1 of 18)	12609.0	NM_001347237	69582.0	Mm.33220	NM_001033150	ENSMUSG00000028917	Plekhm2	2310034J19Rik|AI854247|mKIAA0842	pleckstrin homology domain containing, family M (with RUN domain) member 2	protein-coding	4.5437962730528	3.3659532812781	4.10018271070545	4.16266708851849	4.4723484887395	3.9002974338053	3.85133778499288	4.47197690478214	0.128046996288604	0.77853409103431	0.998431161219273
Merged-chr2-77170580-4	chr2	77170494	77170694	+	916.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001025576)	promoter-TSS (NM_001025576)	41.0	NM_001025576	545428.0	Mm.26579	NM_001025576	ENSMUSG00000044033	Ccdc141	2610301F02Rik|CAMDI	coiled-coil domain containing 141	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-45026495-3	chr6	45026370	45026570	+	761.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33591.0	NM_001004357	66797.0	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-88226159-6	chr7	88226060	88226260	+	891.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51925.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-120090151-2	chr6	120090051	120090251	+	558.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-3229.0	NM_016718	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-46356937-4	chr4	46356828	46357028	+	726.891663	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12734.0	NM_183298	110805.0	Mm.354634	NM_183298	ENSMUSG00000070990	Foxe1	Titf2	forkhead box E1	protein-coding	1.24400464500063	1.71408882288481	1.34845241552903	1.12910458581751	1.08718530052042	2.42024119097881	1.52262202723334	1.31695390530129	1.04970949948936	0.365830414103437	0.861036332257394
Merged-chr4-102753551-4	chr4	102753441	102753641	+	942.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6594.0	NM_001285860	73094.0	Mm.54201	NM_144906	ENSMUSG00000028524	Sgip1	3110007P09Rik|SGIP1alpha|gag	SH3-domain GRB2-like (endophilin) interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-75086400-4	chr15	75086294	75086494	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25543.0	NM_001357693	100041546.0	Mm.482110	NM_001099217	ENSMUSG00000022584	Ly6c2	Ly-6C.2|Ly-6C2	lymphocyte antigen 6 complex, locus C2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-87504854-2	chr3	87504750	87504950	+	680.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20728.0	NM_001083318	27049.0	Mm.219460	NM_012051	ENSMUSG00000003382	Etv3	AI414410|METS|Pe1	ets variant 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-66084083-3	chr15	66083980	66084180	+	745.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152923, intron 1 of 14)	intron (NM_152923, intron 1 of 14)	-107276.0	NM_001145096	654498.0	Mm.364550	NM_001145096	ENSMUSG00000072511	Hhla1	F930104E18Rik	HERV-H LTR-associating 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-124616031-13	chr2	124615707	124615907	+	836.211548	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291000, intron 1 of 18)	intron (NM_001291000, intron 1 of 18)	5511.0	NM_172537	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-61082316-3	chr18	61082209	61082409	+	598.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008809, intron 22 of 22)	intron (NM_008809, intron 22 of 22)	-23263.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-105192278-2	chr14	105192178	105192378	+	581.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur2|SINE|Alu	-14951.0	NM_134077	74213.0	Mm.474531	NM_134077	ENSMUSG00000022119	Rbm26	1700009P03Rik|AI447318|C230097K14Rik|C86225|MLZ-393|Pro1777|Se70-2	RNA binding motif protein 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-40321654-4	chr9	40321577	40321777	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357622)	promoter-TSS (NM_001357622)	-354.0	NM_001357622	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-80313051-4	chr18	80312952	80313152	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001190373, intron 3 of 3)	intron (NM_001190373, intron 3 of 3)	51202.0	NM_001190373	240444.0	Mm.279568	NM_001190373	ENSMUSG00000059852	Kcng2	AA591524	potassium voltage-gated channel, subfamily G, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-31235067-2	chr16	31234967	31235167	+	546.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33829.0	NM_030138	78618.0	Mm.274646	NM_030138	ENSMUSG00000049076	Acap2	4832442G16|9530039J15Rik|CNT-B2|Centb2|mKIAA0041	ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-62877980-2	chr9	62877880	62878080	+	616.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15956.0	NR_003965	677044.0	Mm.422004	NR_003965	ENSMUSG00000074250	Gm10653	-	ribsomal protein S2 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53264743-3	chr4	53264631	53264831	+	993.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033139, intron 1 of 1)	intron (NR_033139, intron 1 of 1)	761.0	NR_033140	381524.0	Mm.23351	NM_001033454	ENSMUSG00000086712	AI427809	Gm1659	expressed sequence AI427809	ncRNA	2.88715895840564	2.60366881057356	2.62577917095353	1.42276505096227	2.4417559117579	2.19065036053388	2.41317030959152	2.98587122462525	0.0949475984608236	0.911395004547472	0.998431161219273
Merged-chr5-124469623-2	chr5	124469523	124469723	+	571.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030259, intron 2 of 3)	L2b|LINE|L2	8612.0	NM_030259	80291.0	Mm.425280	NM_030259	ENSMUSG00000029401	Rilpl2	-	Rab interacting lysosomal protein-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-47836225-3	chr6	47836130	47836330	+	875.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173034, intron 1 of 4)	CpG	569.0	NM_173034	272347.0	Mm.169059	NM_027477	ENSMUSG00000062519	Zfp398	5730513I23Rik	zinc finger protein 398	protein-coding	2.330575943743	2.53282767190373	2.88332614169675	1.17586931269121	2.35165638318318	1.25153931220481	1.21450758943713	3.01111250752928	-0.350148379061243	0.753238525927405	0.998431161219273
Merged-chr4-88788620-1	chr4	88788520	88788720	+	720.75	f0_c57.idr	promoter-TSS (NM_001161609).4	promoter-TSS (NM_001161609).4	-12.0	NM_001161609	545654.0	Mm.478784	NM_001161609	ENSMUSG00000095101	Gm13285	limitin	predicted gene 13285	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-130907003-2	chr2	130906901	130907101	+	982.6666869999999	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015523)	promoter-TSS (NR_015523)	506.0	NM_009730	11990.0	Mm.119936	NM_009730	ENSMUSG00000027312	Atrn	AW558010|Mgca|mg	attractin	protein-coding	2.49968491906819	1.3111525024397	1.25933779547147	2.93503826778667	2.01959866883466	1.64397665531429	3.87885368414092	3.58509503261177	1.61683321108897	0.284762900223452	0.788928250511309
Merged-chr5-3968578-3	chr5	3968478	3968678	+	769.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194462, intron 7 of 47)	intron (NM_194462, intron 7 of 47)	40392.0	NM_194462	100986.0	Mm.46044	NM_194462	ENSMUSG00000040407	Akap9	5730481H23Rik|AKAP-9|AKAP450|AW545847|C79026|G1-448-15|PRKA9|mKIAA0803|mei2-5|repro12	A kinase (PRKA) anchor protein (yotiao) 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-145884794-7	chr2	145884585	145884785	+	885.285706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028724, intron 12 of 12)	intron (NM_028724, intron 12 of 12)	-18556.0	NM_026425	67877.0	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	1.26342243664987	1.56786969795638	0.640175618736149	1.12147964740439	0.790045770674773	1.47705865642565	0.642790100900561	0.632584463939635	-1.05266713155727	0.494844167167977	0.935679785535167
Merged-chr15-19856077-1	chr15	19855977	19856177	+	762.0	f0_c57.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	670704.0	NR_155419	102639102.0	Mm.463245	NR_155419	ENSMUSG00000115803	Gm35496	-	predicted gene, 35496	ncRNA	2.50209607132457	1.81209770025558	3.25454820725662	1.28266191598155	0.972427506452679	1.99976008898239	1.33403507459328	1.51039368553316	-2.25579813920575	0.0377209700575573	0.276116293022075
Merged-chr15-84254341-6	chr15	84254250	84254450	+	958.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133167, intron 1 of 12)	Tigger17c|DNA|TcMar-Tigger	22307.0	NM_133167	170736.0	Mm.323892	NM_133167	ENSMUSG00000022438	Parvb	AI595373|AW742462|D15Gsk1|affixin	parvin, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-35730044-4	chr5	35729946	35730146	+	923.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_194344)	promoter-TSS (NM_194344)	-770.0	NM_194344	231147.0	Mm.290429	NM_194344	ENSMUSG00000036553	Sh3tc1	4631428G15|BC024909	SH3 domain and tetratricopeptide repeats 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27740366-4	chr2	27740273	27740473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290481, intron 2 of 9)	intron (NM_001290481, intron 2 of 9)	29790.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-109210005-4	chr7	109209887	109210087	+	812.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-34780.0	NM_001302205	109594.0	Mm.360145	NM_057173	ENSMUSG00000036111	Lmo1	Rbtn-1|Rbtn1|Ttg1	LIM domain only 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-22158206-2	chr9	22158091	22158291	+	545.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_001082532, exon 2 of 2)	exon (NM_001082532, exon 2 of 2)	1345.0	NM_001082532	66268.0	Mm.28924	NM_025457	ENSMUSG00000010607	Pigyl	1810008A14Rik|PIG-Y|Pigy	phosphatidylinositol glycan anchor biosynthesis, class Y-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-115040594-3	chr7	115040490	115040690	+	568.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	89316.0	NR_040319	101786.0	Mm.395157	NR_040317	ENSMUSG00000108379	A730082K24Rik	AU044236	RIKEN cDNA A730082K24 gene	ncRNA	2.61000308411662	2.18279425990312	2.99386153339355	1.42427381707688	2.45092785448128	2.50592312449682	2.5458036430544	2.99851226256906	0.42720941454466	0.613475323705173	0.977140932889814
Merged-chr6-128362051-2	chr6	128361951	128362151	+	569.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008021)	promoter-TSS (NM_008021)	771.0	NM_001326586	72440.0	Mm.143908	NM_197981	ENSMUSG00000048668	Rhno1	2510047L19Rik|5930416I19Rik	RAD9-HUS1-RAD1 interacting nuclear orphan 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-3914715-4	chr11	3914642	3914842	+	826.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153142)	promoter-TSS (NM_153142)	-78.0	NM_153142	103710.0	Mm.171514	NM_153142	ENSMUSG00000048807	Slc35e4	A330108F03Rik|AI414849|AI536442	solute carrier family 35, member E4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131091553-2	chr1	131091453	131091653	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008551, intron 1 of 9)	intron (NM_008551, intron 1 of 9)	6290.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-82957158-1	chr10	82957058	82957258	+	564.0	f1_balb.idr	Intergenic	ORR1B1-int|LTR|ERVL-MaLR	-28339.0	NM_021439	58250.0	Mm.360747	NM_021439	ENSMUSG00000034612	Chst11	1110020P09Rik|C4ST|C4ST-1|C4ST1|C4s	carbohydrate sulfotransferase 11	protein-coding	0.375738635039295	1.06591963892833	0.394202823062773	0.387305301555873	0.377468809600693	1.07796435740348	0.759472672077266	1.08044832973033	1.37837589944494	0.448815802844344	1
Merged-chr19-10525449-8	chr19	10525358	10525558	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025333)	promoter-TSS (NM_025333)	214.0	NM_172302	269061.0	Mm.490260	NM_172302	ENSMUSG00000034820	Cpsf7	5730453I16Rik|AL022757|C330017N18Rik	cleavage and polyadenylation specific factor 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-89263085-2	chr6	89262985	89263185	+	600.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	22640.0	NR_131021	75131.0	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	Gm44205	RIKEN cDNA 4930512J16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-8936405-2	chr12	8936305	8936505	+	555.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008640, intron 5 of 6)	B2_Mm1t|SINE|B2	-11524.0	NM_010770	17182.0	Mm.42226	NM_010770	ENSMUSG00000020583	Matn3	AV009181	matrilin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-68867889-2	chr11	68867789	68867989	+	616.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-14758.0	NM_023668	83431.0	Mm.31979	NM_023668	ENSMUSG00000018736	Ndel1	2600006O07Rik|MITAP1|NUDEL|mNudel	nudE neurodevelopment protein 1 like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-83821982-3	chr3	83821884	83822084	+	935.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC3|LINE|L1	19624.0	NM_011905	24088.0	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-120226648-4	chr7	120226537	120226737	+	899.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026458, intron 9 of 30)	intron (NM_026458, intron 9 of 30)	22673.0	NM_026458	67928.0	Mm.158178	NM_026458	ENSMUSG00000062017	Abca14	1700110B15Rik|4930539G24Rik	ATP-binding cassette, sub-family A (ABC1), member 14	protein-coding	1.94898061381544	1.80121954609567	1.14774939973612	2.40528459828355	2.29659645067716	1.17703242371763	2.0246560570622	1.701244684462	-0.100404870180157	0.928243786585769	0.998431161219273
Merged-chr10-117897951-4	chr10	117897854	117898054	+	956.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27505.0	NR_045342	71067.0	Mm.410793	NR_045342	ENSMUSG00000112500	4933411E08Rik	-	RIKEN cDNA 4933411E08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-8825988-2	chr10	8825888	8826088	+	580.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 2 of 19)	intron (NM_175155, intron 2 of 19)	60082.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-99969163-2	chr12	99969063	99969263	+	687.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164426, intron 2 of 2)	intron (NM_001164426, intron 2 of 2)	4664.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-88821030-2	chr13	88820930	88821130	+	975.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010103)	promoter-TSS (NM_010103)	-442.0	NM_010103	13612.0	Mm.125580	NM_010103	ENSMUSG00000034488	Edil3	Del-1|Del1|Sox2-cre|Sox2Cre|Tg(Sox2-cre)1Amc	EGF-like repeats and discoidin I-like domains 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-88109063-2	chr17	88108963	88109163	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16449.0	NM_001190356	225058.0	Mm.312053	NM_001190356		Gm4832	EG225058	predicted gene 4832	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-35054607-4	chr12	35054499	35054699	+	878.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001014973, intron 1 of 25)	intron (NM_001014973, intron 1 of 25)	7410.0	NM_001014973	217463.0	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	1.42542781584358	1.7458457330415	1.68834770745072	1.64252984255288	1.43560360445655	1.5902831701206	1.83957276582085	2.47929448158505	0.863072196735951	0.405764724634244	0.89095290927429
Merged-chr10-59324015-2	chr10	59323915	59324115	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001316370, intron 1 of 13)	intron (NM_001316370, intron 1 of 13)	719.0	NM_001316370	18451.0	Mm.2212	NM_011030	ENSMUSG00000019916	P4ha1	AL022634|P4ha	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5431234-2	chr19	5431134	5431334	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6090.0	NM_001256515	107242.0	Mm.329658	NM_134149	ENSMUSG00000047423	AI837181	Bles03|N28173	expressed sequence AI837181	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46047620-3	chr19	46047518	46047718	+	659.455566	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-2307.0	NM_001113408	16825.0	Mm.327442	NM_010697	ENSMUSG00000025223	Ldb1	CLIM2|NLI	LIM domain binding 1	protein-coding	2.1013536027511	1.95985230475821	1.73674547257232	2.55589834153004	2.11824647992662	2.36991189386987	1.74853123447547	1.85813376458469	-0.222411005235375	0.80845814869909	0.998431161219273
Merged-chr16-35776693-6	chr16	35776599	35776799	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152314, intron 1 of 8)	intron (NR_152314, intron 1 of 8)	6313.0	NM_175111	66667.0	Mm.45272	NM_175111	ENSMUSG00000022849	Hspbap1	3830421G21Rik	Hspb associated protein 1	protein-coding	-0.0375249446779908	-0.0159371923345253	-0.0229399371001174	-0.0283882395673523	0.131247627222372	0.793026661091293	0.833283368022602	-0.0274334997398494	4.20227041547956	0.0489576635374832	1
Merged-chr2-166026091-3	chr2	166025964	166026164	+	666.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008679, intron 1 of 22)	MTE2a|LTR|ERVL-MaLR	33427.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83576986-2	chr6	83576886	83577086	+	600.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_078345, intron 3 of 7)	B1_Mus2|SINE|Alu	-4482.0	NM_001362080	70527.0	Mm.32801	NM_024239	ENSMUSG00000006906	Stambp	5330424L14Rik|5730422L11Rik|AW107289|Amsh|mKIAA4198	STAM binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-63108058-2	chr14	63107958	63108158	+	680.083374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14404.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-102063272-4	chr5	102063159	102063359	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 1 of 66)	intron (NM_172882, intron 1 of 66)	6662.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-148075892-2	chr4	148075792	148075992	+	553.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12172.0	NM_009642	11610.0	Mm.46247	NM_009642	ENSMUSG00000029007	Agtrap	3300002E14Rik|AT1R|Atrap|D4Wsu124e	angiotensin II, type I receptor-associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-17746335-2	chr13	17746231	17746431	+	674.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_027118, intron 7 of 13)	intron (NM_027118, intron 7 of 13)	-1142.0	NR_035412	100316665.0		NR_035412	ENSMUSG00000080574	Mir466i	Mirn466i|mmu-mir-466i	microRNA 466i	ncRNA	2.65524862144303	3.61231927574283	2.53307252999539	2.31884922566447	3.31712998075343	2.89781564389709	1.82275064259921	2.71241910597096	-0.151619058557918	0.843924502487259	0.998431161219273
Merged-chr4-43041414-3	chr4	43041322	43041522	+	883.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045567, intron 1 of 7)	intron (NR_045567, intron 1 of 7)	-1121.0	NM_001253354	230088.0	Mm.260162	NM_172691	ENSMUSG00000036002	Fam214b	B230312A22Rik	family with sequence similarity 214, member B	protein-coding	1.40901473638552	1.8408601918955	1.8650626860091	0.837213019264335	0.818399227125246	0.870357796627288	1.42064497217476	1.61763657561738	-1.11526801283857	0.419051263040166	0.898921771534229
Merged-chr4-99715602-4	chr4	99715519	99715719	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081264)	promoter-TSS (NM_001081264)	-11.0	NM_001081264	320438.0	Mm.32408	NM_001081264	ENSMUSG00000073792	Alg6	E230028F23Rik	asparagine-linked glycosylation 6 (alpha-1,3,-glucosyltransferase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-3447640-4	chr6	3447556	3447756	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	46842.0	NM_178899	101202.0	Mm.206911	NM_178899	ENSMUSG00000044156	Hepacam2	AI987662	HEPACAM family member 2	protein-coding	4.81984702566085	5.07121015773126	5.14519638288228	5.05146438201537	5.66518227178369	5.37016960132466	5.18054367675501	5.14080132894685	0.394794395768661	0.187006662674428	0.664545252931279
Merged-chr7-126465439-2	chr7	126465339	126465539	+	555.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2366.0	NM_007504	11937.0	Mm.35134	NM_007504	ENSMUSG00000030730	Atp2a1	SERCA1	ATPase, Ca++ transporting, cardiac muscle, fast twitch 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-114862416-1	chr6	114862316	114862516	+	555.0	f1_c57bl6.idr	exon (NM_177683, exon 5 of 5)	exon (NM_177683, exon 5 of 5)	59405.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-9736741-2	chr4	9736641	9736841	+	862.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2B2|LINE|L1	-33844.0	NR_030693	320152.0	Mm.159946	NR_030693		4930412C18Rik	5730591J02Rik	RIKEN cDNA 4930412C18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-97314840-2	chr7	97314740	97314940	+	707.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001177412, exon 6 of 10)	exon (NM_001177412, exon 6 of 10)	11124.0	NM_001177412	244144.0	Mm.297541	NM_001177412	ENSMUSG00000035713	Usp35	Gm1088|Gm493	ubiquitin specific peptidase 35	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-13153762-2	chr8	13153662	13153862	+	592.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5399.0	NM_001317353	16783.0	Mm.16716	NM_010684	ENSMUSG00000031447	Lamp1	CD107a|LGP-120|LGP-A|Lamp-1|P2B|Perk	lysosomal-associated membrane protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35080010-4	chr17	35079912	35080112	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001163192)	TTS (NM_001163192)	3070.0	NM_027366	70274.0	Mm.250491	NM_027366	ENSMUSG00000013766	Ly6g6e	2310011I02Rik|G6e	lymphocyte antigen 6 complex, locus G6E	protein-coding	3.12443803658016	1.4607149985161	2.72720036814217	2.5495408809955	2.84944549942015	1.46968072622889	2.74887933431303	2.5629607265551	-0.179056038311918	0.844791762912445	0.998431161219273
Merged-chr4-9649035-2	chr4	9648936	9649136	+	862.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290367, intron 1 of 22)	intron (NM_001290367, intron 1 of 22)	-5319.0	NM_001177852	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	1.42635697421371	0.818631026770548	1.66658671611862	0.794693645468507	1.53095993071879	1.38791596383176	0.808186239162625	1.41470869530122	0.273390112730234	0.84862173414821	0.998431161219273
Merged-chr13-103067638-2	chr13	103067538	103067738	+	738.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175171, intron 3 of 28)	intron (NM_175171, intron 3 of 28)	266854.0	NM_175171	328329.0	Mm.202606	NM_175171	ENSMUSG00000034751	Mast4	4930420O11Rik|AI642422|mKIAA0303	microtubule associated serine/threonine kinase family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4282841-2	chr19	4282741	4282941	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026720, intron 1 of 14)	CpG	296.0	NM_026720	68423.0	Mm.23642	NM_026720	ENSMUSG00000005986	Ankrd13d	0710001P18Rik|AI430801	ankyrin repeat domain 13 family, member D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-144723733-2	chr3	144723633	144723833	+	735.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3398.0	NM_001282037	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-181598419-2	chr2	181598319	181598519	+	603.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_172676, intron 1 of 4)	intron (NM_172676, intron 1 of 4)	728.0	NM_172676	229011.0	Mm.205422	NM_172676	ENSMUSG00000038605	Samd10	D930033N23Rik|E130318E08	sterile alpha motif domain containing 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-129407102-1	chr6	129407002	129407202	+	1000.0	f0_c57.idr	Intergenic	Intergenic	-1760.0	NM_001205363	232414.0	Mm.391518	NM_172732	ENSMUSG00000046080	Clec9a	9830005G06Rik|DNGR-1	C-type lectin domain family 9, member a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-58504909-2	chr16	58504809	58505009	+	944.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357433, intron 2 of 10)	intron (NM_001357433, intron 2 of 10)	18517.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-84178612-2	chr12	84178512	84178712	+	758.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163501, intron 1 of 12)	intron (NM_001163501, intron 1 of 12)	15403.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16099771-7	chr7	16099734	16099934	+	808.785706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025898, intron 1 of 10)	intron (NM_025898, intron 1 of 10)	1254.0	NM_025898	108124.0	Mm.104540	NM_025898	ENSMUSG00000006024	Napa	1500039N14Rik|AW209189|RA81|SNAP-alpha|SNAPA|SNARE|a-SNAP|hyh	N-ethylmaleimide sensitive fusion protein attachment protein alpha	protein-coding	-0.971846193215455	-1.32125498911739	-1.1746473638158	-1.33937805479113	-1.35087743162387	-1.31909880171484	-1.32895245901187	-1.3379150641624	-2.21753722681566	0.513113539718258	1
Merged-chr4-34295863-2	chr4	34295763	34295963	+	604.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	-245796.0	NM_026293	67652.0	Mm.55848	NM_026293	ENSMUSG00000028264	Spaca1	1700124L11Rik|4930540L03Rik	sperm acrosome associated 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-44887807-2	chr19	44887707	44887907	+	925.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43312.0	NM_172638	226151.0	Mm.212609	NM_172638	ENSMUSG00000036097	Slf2	3632432H19|Fam178a	SMC5-SMC6 complex localization factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-128142435-2	chr6	128142335	128142535	+	648.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175414, intron 1 of 8)	Tigger19a|DNA|TcMar-Tigger	1143.0	NM_175414	109246.0	Mm.21814	NM_175414	ENSMUSG00000030352	Tspan9	6720474K14Rik|9430079M16Rik|AU018597|Tspan-9	tetraspanin 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-97714898-4	chr1	97714803	97715003	+	960.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173760, intron 25 of 27)	intron (NM_173760, intron 25 of 27)	-52885.0	NM_133825	52392.0	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-83900152-2	chr3	83900052	83900252	+	791.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172681, intron 33 of 34)	intron (NM_172681, intron 33 of 34)	-58544.0	NM_011905	24088.0	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-34695021-1	chr11	34694921	34695121	+	861.0	f0_balb.idr	intron (NM_033374, intron 17 of 51)	intron (NM_033374, intron 17 of 51)	88884.0	NM_033374	94176.0	Mm.380679	NM_033374	ENSMUSG00000020143	Dock2	AI662014|AW122239|CED-5|Hch|MBC	dedicator of cyto-kinesis 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-95563702-4	chr10	95563599	95563799	+	941.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027722, exon 1 of 5)	exon (NM_027722, exon 1 of 5)	447.0	NM_027722	71207.0	Mm.24397	NM_027722	ENSMUSG00000020029	Nudt4	4933436C10Rik|DIPP-2|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P	nudix (nucleoside diphosphate linked moiety X)-type motif 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-97461487-4	chr16	97461384	97461584	+	778.049988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010846, intron 1 of 10)	intron (NM_010846, intron 1 of 10)	1421.0	NM_010846	17857.0	Mm.33996	NM_010846	ENSMUSG00000000386	Mx1	AI893580|Mx|Mx-1	MX dynamin-like GTPase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-48855001-2	chr11	48854901	48855101	+	835.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	16419.0	NM_001355757	15944.0	Mm.29938	NM_008326	ENSMUSG00000046879	Irgm1	Ifggd3|Ifi1|Iigp3|Iipg3|Irgm	immunity-related GTPase family M member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-113154597-2	chr12	113154481	113154681	+	739.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_007763)	TTS (NM_007763)	-1840.0	NM_134041	104732.0	Mm.87616	NM_134041	ENSMUSG00000037466	Tedc1	4930427A07Rik|AA536649|mFLJ00116	tubulin epsilon and delta complex 1	protein-coding	1.70060846989219	0.95799347714314	1.86914118111734	2.62392466897045	1.29670753503973	2.30201602596954	0.938043589020916	0.915302908994547	-1.08621304740315	0.394383288751632	0.882816975759419
Merged-chr8-41039669-4	chr8	41039554	41039754	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005863, intron 5 of 13)	intron (NM_001005863, intron 5 of 13)	2277.0	NM_001005865	102103.0	Mm.149438	NM_001005863	ENSMUSG00000045636	Mtus1	AI481402|ATBP135|Atip1|B430010I23Rik|B430305I03Rik|C85752|Cctsg1-440|MD44|MTSG1|mKIAA1288	mitochondrial tumor suppressor 1	protein-coding	4.07106345722476	4.71843076661783	3.97803393483799	4.17236625366382	3.7669857317713	3.82298508997063	4.0762638069144	4.56564659805362	-0.216929256372552	0.622762154567933	0.98013559210836
Merged-chr9-32350559-2	chr9	32350459	32350659	+	631.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6322.0	NM_010605	16521.0	Mm.69472	NM_010605	ENSMUSG00000032034	Kcnj5	GIRK4|Kir3.4	potassium inwardly-rectifying channel, subfamily J, member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-132229943-5	chr2	132229913	132230113	+	722.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17775.0	NM_027478	70612.0	Mm.30116	NM_027478	ENSMUSG00000027341	Tmem230	5730494N06Rik|AA407821	transmembrane protein 230	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70775452-2	chr14	70775352	70775552	+	671.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_010071, intron 1 of 4)	intron (NM_010071, intron 1 of 4)	1071.0	NM_010071	13449.0	Mm.243323	NM_010071	ENSMUSG00000022102	Dok2	DokR|Frip|dok-R	docking protein 2	protein-coding	-0.257476824420966	0.0801765478599969	-0.249864952587401	0.0254688771322861	-0.256774555002875	0.0870779984990657	-0.249040753919603	0.0296649206564476	0.0345311254802624	0.98808982836323	1
Merged-chr13-21170487-2	chr13	21170387	21170587	+	642.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9444.0	NM_009054	19720.0	Mm.314056	NM_009054	ENSMUSG00000021326	Trim27	AW538890|Gm19403|Rfp	tripartite motif-containing 27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-151511170-3	chr1	151511078	151511278	+	647.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10187.0	NM_001360847	19821.0	Mm.474038	NM_011277	ENSMUSG00000026484	Rnf2	AI326319|AI450156|AU019207|Ring1B|dinG	ring finger protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-115150889-6	chr13	115150810	115151010	+	804.055542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48946.0	NM_001033228	109700.0	Mm.317280	NM_001033228	ENSMUSG00000042284	Itga1	CD49A|E130012M19Rik|Vla1	integrin alpha 1	protein-coding	1.07620353846267	1.03008927625976	1.2836928384066	1.35555339848804	1.08352927261645	1.03569597743185	1.29383339861775	1.36278261579248	0.0362592339189377	0.976948635239096	0.998431161219273
Merged-chr2-38932595-2	chr2	38932495	38932695	+	599.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172854, intron 1 of 7)	intron (NM_172854, intron 1 of 7)	615.0	NM_172854	241327.0	Mm.103491	NM_172854	ENSMUSG00000046618	Olfml2a	4932431K08Rik|mFLJ00237	olfactomedin-like 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101551713-4	chr7	101551601	101551801	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_033804)	TTS (NR_033804)	4101.0	NM_007490	11871.0	Mm.439746	NM_007490	ENSMUSG00000092517	Art2a-ps	ARTC2|Art2a|Ly92a|Rt-6|Rt6|Rt6-1	ADP-ribosyltransferase 2a, pseudogene	protein-coding	4.23163073699356	3.93572220814827	3.59187860578962	3.49247271023069	3.67509402657369	2.98211989368089	3.35286309117588	3.42894203112128	-0.688331778202696	0.18736288757335	0.664995221281668
Merged-chr7-48997721-2	chr7	48997621	48997821	+	658.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111016, intron 2 of 38)	intron (NM_001111016, intron 2 of 38)	38648.0	NM_001111016	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167420833-4	chr2	167420748	167420948	+	767.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_148929)	promoter-TSS (NM_148929)	-862.0	NM_148929	77031.0	Mm.278924	NM_148929	ENSMUSG00000039463	Slc9a8	1200006P13Rik|6430709P13Rik|AI182282|NHE-8|NHE8	solute carrier family 9 (sodium/hydrogen exchanger), member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-9895160-2	chr19	9895060	9895260	+	799.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016692, intron 2 of 17)	intron (NM_016692, intron 2 of 17)	4373.0	NM_016692	16319.0	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	0.651777896085563	1.64410455286438	1.35396304177279	0.871184425704993	0.654496385162854	0.697063187227429	1.23443908297829	1.61959114257365	-0.267653767785106	0.860240748597094	0.998431161219273
Merged-chr4-149820730-3	chr4	149820638	149820838	+	947.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46471.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-105981576-3	chr12	105981483	105981683	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	-28680.0	NM_011705	22367.0	Mm.2981	NM_011705	ENSMUSG00000021115	Vrk1	51PK	vaccinia related kinase 1	protein-coding	3.24024898098253	1.65165087589808	1.98721674572178	0.892889750790622	0.55107708291819	0.655116966746346	0.623524672030956	0.594948171438618	-5.78575460604981	6.39493060046732e-05	0.00215120684143197
Merged-chr2-155299666-3	chr2	155299550	155299750	+	941.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004721, intron 8 of 11)	intron (NM_001004721, intron 8 of 11)	23286.0	NR_046364	66734.0	Mm.196239	NM_025735	ENSMUSG00000027602	Map1lc3a	1010001H21Rik|4922501H04Rik|LC3|LC3a	microtubule-associated protein 1 light chain 3 alpha	protein-coding	3.28374854572189	3.71882787147142	4.6551535418447	3.8147329979381	4.3558715178101	4.83160961155487	5.15158597860881	4.21854433335669	0.940721503487499	0.0396428619362898	0.283340979454888
Merged-chr1-43868517-3	chr1	43868446	43868646	+	745.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40838.0	NM_026430	67883.0	Mm.387202	NM_026430	ENSMUSG00000057363	Uxs1	1600025I13Rik|AI451869|AI649125|AW550562	UDP-glucuronate decarboxylase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44836536-3	chr7	44836449	44836649	+	883.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010215, intron 2 of 7)	intron (NM_010215, intron 2 of 7)	261.0	NM_010215	14204.0	Mm.2565	NM_010215	ENSMUSG00000074141	Il4i1	Fig1|Fig1-ps|LAAO|LAO	interleukin 4 induced 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-165643209-4	chr1	165643100	165643300	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8659.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128498104-2	chr10	128498004	128498204	+	560.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172259, intron 1 of 6)	intron (NM_172259, intron 1 of 6)	581.0	NM_172259	216459.0	Mm.291688	NM_172259	ENSMUSG00000039824	Myl6b	5730437E04Rik|BC037527|MLC1SA	myosin, light polypeptide 6B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-22744897-4	chr2	22744807	22745007	+	985.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	-29420.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-75798637-1	chr13	75798537	75798737	+	559.0	f1_balb.idr	Intergenic	Intergenic	-41248.0	NM_001360151	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	0.307382999861875	1.16368697000439	0.360342048944761	0.153244843678907	0.874161081032643	0.169296748538303	0.161261585789806	0.154339051500084	-0.984517012932577	0.614164181389861	1
Merged-chr3-96276635-2	chr3	96276535	96276735	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6935.0	NM_175666	319189.0	Mm.297655	NM_175666	ENSMUSG00000105827	Hist2h2bb	H2b-616	histone cluster 2, H2bb	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-111082402-5	chr7	111082326	111082526	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013507, intron 1 of 21)	CpG	604.0	NM_001040131	13690.0	Mm.185453	NM_013507	ENSMUSG00000005610	Eif4g2	DAP-5|E130105L11Rik|Nat1|Natm1|p97	eukaryotic translation initiation factor 4, gamma 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-121000736-3	chr14	121000598	121000798	+	867.0499880000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-34876.0	NM_134082	223254.0	Mm.223980	NM_134082	ENSMUSG00000025555	Farp1	AW228844|BC030329|Cdep	FERM, RhoGEF (Arhgef) and pleckstrin domain protein 1 (chondrocyte-derived)	protein-coding	2.39296744704887	2.04401625962624	3.44347185745852	2.84160722815267	1.82765966602516	2.05960726769977	3.46943901206275	2.85657250059194	-0.116729162140214	0.886990301063086	0.998431161219273
Merged-chr9-106148201-2	chr9	106148101	106148301	+	690.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5923.0	NR_029549	387153.0		NR_029549	ENSMUSG00000065407	Mir135a-1	Mir135a01|Mirn135|Mirn135a-1|mir-135a-1	microRNA 135a-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-130074087-2	chr3	130073987	130074187	+	679.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(ATG)n|Simple_repeat|Simple_repeat	-13180.0	NM_207209	99683.0	Mm.192303	NM_207209	ENSMUSG00000001052	Sec24b	AI605202|SEC24	Sec24 related gene family, member B (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-79725864-3	chr12	79725794	79725994	+	764.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 8 of 10)	intron (NM_009014, intron 8 of 10)	198839.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-79670810-4	chr15	79670708	79670908	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172609)	promoter-TSS (NM_172609)	-60.0	NM_172609	223696.0	Mm.246435	NM_172609	ENSMUSG00000022427	Tomm22	2310047D01|Tom22	translocase of outer mitochondrial membrane 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-31119855-2	chr6	31119755	31119955	+	845.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_110471, intron 3 of 3)	intron (NR_110471, intron 3 of 3)	-56762.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-5055208-2	chr16	5055108	5055308	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001356320, exon 2 of 17)	exon (NM_001356320, exon 2 of 17)	5151.0	NM_001356320	170644.0	Mm.66356	NM_026666	ENSMUSG00000039473	Ubn1	1110029L11Rik|2610108L02Rik|AA673476|AW124741	ubinuclein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-135240582-4	chr6	135240491	135240691	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080552, intron 4 of 5)	intron (NM_001080552, intron 4 of 5)	7293.0	NM_001080552	14840.0	Mm.272306	NM_010352	ENSMUSG00000030206	Gsg1	-	germ cell associated 1	protein-coding	3.22763974700015	3.63527745295789	4.03959402145649	3.6600114596594	3.98637017545215	4.48074900304693	3.93924273199292	4.17397412333063	0.692027955257108	0.137735436017554	0.578974883735034
Merged-chr5-105053755-5	chr5	105053714	105053914	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029509)	promoter-TSS (NM_029509)	-253.0	NM_029509	76074.0	Mm.458519	NM_029509	ENSMUSG00000034438	Gbp8	5830443L24Rik|mGBP8	guanylate-binding protein 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125168730-2	chr6	125168630	125168830	+	757.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_146171, exon 31 of 32)	exon (NM_146171, exon 31 of 32)	-2263.0	NM_001289726	14433.0	Mm.304088	NM_008084	ENSMUSG00000057666	Gapdh	Gapd	glyceraldehyde-3-phosphate dehydrogenase	protein-coding	1.28882554438122	0.980125276631726	0.957865721749321	2.38246344340783	1.97985019619994	0.985037932331568	1.85558589581583	2.00210394071578	0.52391130976593	0.685358246998979	0.996533206832645
Merged-chr17-71196839-3	chr17	71196725	71196925	+	851.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022882, intron 1 of 19)	intron (NM_022882, intron 1 of 19)	-7829.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-21044531-2	chr11	21044431	21044631	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F1|SINE|Alu	-46793.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-25087743-4	chr8	25087639	25087839	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031257, intron 2 of 11)	MIR3|SINE|MIR	14072.0	NM_031257	83436.0	Mm.261122	NM_031257	ENSMUSG00000031557	Plekha2	6430512N22Rik|AI851530|AU041791|TAPP2|W91773	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-64305029-2	chr15	64304929	64305129	+	795.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 3 of 28)	RMER4B|LTR|ERVK	7644.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-74596124-3	chr15	74596010	74596210	+	812.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40208.0	NM_001177437	69439.0	Mm.263708	NM_001177437	ENSMUSG00000022603	Mroh4	1700016M24Rik	maestro heat-like repeat family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-79937270-2	chr10	79937170	79937370	+	891.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001288625, intron 3 of 8)	intron (NM_001288625, intron 3 of 8)	9929.0	NM_001288625	13496.0	Mm.301282	NM_007880	ENSMUSG00000019564	Arid3a	Bright|Dri1|Dril1	AT rich interactive domain 3A (BRIGHT-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-45112208-4	chr2	45112107	45112307	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_110571)	promoter-TSS (NR_110571)	-53.0	NR_110571	433424.0	Mm.441408	NR_110571	ENSMUSG00000052248	Zeb2os	Gm13476|Zeb2nat	zinc finger E-box binding homeobox 2, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-98919931-2	chr4	98919831	98920031	+	592.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD-int|LTR|ERVL-MaLR	-3879.0	NM_001301414	230484.0	Mm.371692	NM_146144	ENSMUSG00000028560	Usp1	-	ubiquitin specific peptidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-105722999-3	chr3	105722909	105723109	+	911.5714109999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17551.0	NM_001163356	109050.0	Mm.212591	NM_175398	ENSMUSG00000048458	Fam212b	6530418L21Rik|inka2	family with sequence similarity 212, member B	protein-coding	2.62046029179415	2.62491628334252	3.40543378327252	2.33909430196146	2.45722976203911	2.86900962645087	1.44323157063361	2.05786522841199	-1.01242526354524	0.228056233565161	0.72106957756012
Merged-chr10-41288976-4	chr10	41288863	41289063	+	905.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133999, intron 1 of 22)	intron (NM_133999, intron 1 of 22)	14278.0	NM_133999	103199.0	Mm.277242	NM_133999	ENSMUSG00000038417	Fig4	A530089I17Rik|AI326867|Sac3	FIG4 phosphoinositide 5-phosphatase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-74974676-4	chr7	74974564	74974764	+	922.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55547.0	NR_131122	75205.0	Mm.399304	NR_131122	ENSMUSG00000108803	4930533N22Rik	Gm44904	RIKEN cDNA 4930533N22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-22017400-1	chr10	22017300	22017500	+	627.0	f0_balb.idr	Intergenic	Intergenic	22734.0	NM_011361	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	2.42170828466336	2.48096463652986	3.28986148557782	1.35602501688004	2.6322826200689	1.44582197742018	3.1103081427887	2.85758571890888	0.153546668937165	0.869383361925753	0.998431161219273
Merged-chr11-69931162-4	chr11	69931050	69931250	+	986.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4749.0	NM_016875	53422.0	Mm.29286	NM_016875	ENSMUSG00000018554	Ybx2	Msy2	Y box protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-105582479-4	chr5	105582378	105582578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133897, intron 3 of 3)	intron (NM_133897, intron 3 of 3)	63007.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-99449837-4	chr11	99449759	99449959	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11706.0	NM_023256	66809.0	Mm.28042	NM_023256	ENSMUSG00000035775	Krt20	9030623C06Rik|Ck-20|Ck20|K20|Krt21	keratin 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-67229076-4	chr7	67228971	67229171	+	928.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_175215)	TTS (NM_175215)	6455.0	NM_001191051	75099.0	Mm.121691	NM_175215	ENSMUSG00000043831	Lysmd4	4930506D23Rik	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-9162422-3	chr5	9162335	9162535	+	863.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011806)	promoter-TSS (NM_011806)	-659.0	NR_152861	23857.0	Mm.22480	NM_011806	ENSMUSG00000042508	Dmtf1	Dimp|Dmp1	cyclin D binding myb-like transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-39440354-4	chr10	39440269	39440469	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122892, intron 2 of 12)	intron (NM_001122892, intron 2 of 12)	70570.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-59551824-2	chr11	59551724	59551924	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_145827, exon 5 of 10)	exon (NM_145827, exon 5 of 10)	9138.0	NR_153314	216799.0	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-8702007-4	chr11	8701937	8702137	+	966.75	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37502.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	5.44121085744291	5.04390107023699	4.58809770389073	4.28375022689598	2.47561575499856	3.55516815144151	3.31366830924299	2.80119859925342	-2.48013943746198	5.60527163749114e-07	4.03784530520047e-05
Merged-chr11-108240127-2	chr11	108240027	108240227	+	696.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011101, intron 2 of 16)	intron (NM_011101, intron 2 of 16)	103761.0	NM_011101	18750.0	Mm.222178	NM_011101	ENSMUSG00000050965	Prkca	AI875142|Pkca	protein kinase C, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-63104219-4	chr14	63104100	63104300	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18262.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-55122606-4	chr3	55122490	55122690	+	849.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001144988, intron 3 of 7)	ORR1F|LTR|ERVL-MaLR	10424.0	NM_001144987	229285.0	Mm.235523	NM_144895	ENSMUSG00000036580	Spg20	AI840044|C79168|SPARTIN|Spart|TAHCCP1|mKIAA0610	spastic paraplegia 20, spartin (Troyer syndrome) homolog (human)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56161289-2	chr17	56161189	56161389	+	755.099976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1202.0	NM_025566	66443.0	Mm.2312	NM_025566	ENSMUSG00000044469	Tnfaip8l1	2600017J23Rik|TIPE1	tumor necrosis factor, alpha-induced protein 8-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118156309-2	chr11	118156209	118156409	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27090.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-28205585-4	chr2	28205503	28205703	+	920.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019498)	promoter-TSS (NM_019498)	-86.0	NM_001038612	56177.0	Mm.43278	NM_019498	ENSMUSG00000026833	Olfm1	AMY|AW742568|Noe1|OlfA|Pancortin|Pancortin3	olfactomedin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-83806246-4	chr9	83806114	83806314	+	895.43335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_148941)	promoter-TSS (NM_148941)	91.0	NM_148941	83603.0	Mm.83949	NM_148941	ENSMUSG00000032262	Elovl4	-	elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84417979-1	chr8	84417879	84418079	+	679.0	f0_balb.idr	intron (NM_001252060, intron 1 of 47)	intron (NM_001252060, intron 1 of 47)	2615.0	NM_001252061	12286.0	Mm.334658	NM_007578	ENSMUSG00000034656	Cacna1a	APCA|BI|Caca1a|Cacnl1a4|Cav2.1|Ccha1a|EA2|FHM|HPCA|MHP|MHP1|SCA6|alpha1A|la|nmf352|rkr|smrl|tg	calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	protein-coding	-1.2087802031865	-1.18255559123277	-1.1934648774972	-1.20242609004962	-1.0572203610596	-0.684244446803552	-1.19099525421168	-1.20082203728721	2.61682731156801	0.42085555974408	1
Merged-chr17-5814048-4	chr17	5813947	5814147	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14557.0	NR_045080	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-50786605-4	chr2	50786506	50786706	+	998.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	-123078.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-34716002-4	chr1	34715911	34716111	+	909.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-79801.0	NR_033627	241051.0	Mm.282827	NR_033627		AA619741	-	PHD finger protein 19 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-112600396-2	chr2	112600296	112600496	+	582.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_149741, intron 1 of 4)	intron (NR_149741, intron 1 of 4)	-18021.0	NM_001355631	74268.0	Mm.315125	NM_028844	ENSMUSG00000003604	Aven	1700013A01Rik|1700056A21Rik|mAven-L|mAven-S	apoptosis, caspase activation inhibitor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-87448895-4	chr11	87448782	87448982	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199293, intron 2 of 30)	intron (NM_001199293, intron 2 of 30)	21291.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-61269286-2	chr19	61269248	61269448	+	588.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVB7_2B-LTR_MM|LTR|ERVK	-40930.0	NM_009970	12982.0	Mm.287228	NM_009970	ENSMUSG00000059326	Csf2ra	CD116|Csfgmra|GM-CSF-Ra|GM-CSFR	colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)	protein-coding	0.0526630306312387	0.862839370682284	0.0678271000365148	0.401453229765789	0.0540834016797621	0.876116044370203	0.0694395596529305	0.0631537384748314	-0.378342102421375	0.859715986498998	1
Merged-chr14-14619610-2	chr14	14619496	14619696	+	707.375	f0_balb.idr|f1_balb.idr	Intergenic	RLTR45|LTR|ERVK	-83429.0	NM_001360505	218756.0	Mm.258893	NM_001033270	ENSMUSG00000021733	Slc4a7	E430014N10Rik|NBC3|NBCn1|NBCn1-G|Tg(Thy1-SNCA)12Mjff	solute carrier family 4, sodium bicarbonate cotransporter, member 7	protein-coding	1.60825518814363	0.759852962912936	0.743759185289728	0.731051705840256	1.53549640252245	0.763425429146295	1.96746809319418	1.52681241111605	1.74164149304149	0.248519369749871	0.74758343357745
Merged-chr12-17266498-4	chr12	17266427	17266627	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027959)	promoter-TSS (NM_027959)	-68.0	NM_027959	71853.0	Mm.222825	NM_027959	ENSMUSG00000020571	Pdia6	1700015E05Rik|AL023058|C77895|CaBP5|P5|Txndc7	protein disulfide isomerase associated 6	protein-coding	6.05636868487814	4.8140677137043	5.99341816281549	5.44298011792146	3.18755186935232	3.40392313021533	2.98420689735515	3.48747935647188	-2.98466892233596	1.90718033861231e-12	6.02167097438698e-10
Merged-chr9-20757171-3	chr9	20757056	20757256	+	643.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-10860.0	NM_001357639	244723.0	Mm.293552	NM_173777	ENSMUSG00000032172	Olfm2	A030009A06Rik	olfactomedin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-157447327-3	chr2	157447235	157447435	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025395, intron 2 of 13)	L1M4|LINE|L1	23042.0	NM_001025395	20779.0	Mm.22845	NM_009271	ENSMUSG00000027646	Src	AW259666|pp60c-src	Rous sarcoma oncogene	protein-coding	3.99076474958181	4.52076633141639	4.43177798604047	4.93668776442018	4.87458294817574	4.23284381170958	4.29207805905875	5.05408040897815	0.202008707959703	0.612763163767205	0.976548412604232
Merged-chr2-157031044-4	chr2	157030947	157031147	+	741.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164663, intron 7 of 14)	intron (NM_001164663, intron 7 of 14)	-23972.0	NM_025853	66934.0	Mm.25410	NM_025853	ENSMUSG00000027635	Dsn1	1700022L09Rik|AW552447	DSN1 homolog, MIS12 kinetochore complex component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26462405-2	chr17	26462305	26462505	+	822.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A0|LTR|ERVL-MaLR	46067.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-82777066-4	chr6	82776968	82777168	+	846.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2614.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-90472424-4	chr3	90472323	90472523	+	862.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	-3778.0	NM_026374	67781.0	Mm.227258	NM_026374	ENSMUSG00000001016	Ilf2	6230405A16Rik|TEG-267|Tex261|Tex267	interleukin enhancer binding factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-114139221-3	chr2	114139123	114139323	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290788, intron 16 of 33)	intron (NM_001290788, intron 16 of 33)	11347.0	NR_105968	102465982.0		NR_105968	ENSMUSG00000098464	Mir7002	Gm27429|mmu-mir-7002	microRNA 7002	ncRNA	1.07226284557739	1.82439230732422	1.18821154094406	1.14683806242293	2.89202653801173	3.01291405531032	3.29426617022781	3.70856418525945	4.99623824356315	2.09172931490084e-05	0.000845951741129673
Merged-chr18-24121728-7	chr18	24121615	24121815	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172625, exon 1 of 5)	exon (NM_172625, exon 1 of 5)	104.0	NM_172625	225280.0	Mm.258973	NM_172625	ENSMUSG00000047989	Ino80c	D030070L09Rik	INO80 complex subunit C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-37492157-4	chr17	37492061	37492261	+	995.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146328)	promoter-TSS (NM_146328)	-307.0	NM_146328	258325.0	Mm.484339	NM_146328	ENSMUSG00000090894	Olfr110	MOR249-2	olfactory receptor 110	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46134721-2	chr19	46134621	46134821	+	603.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_008852)	TTS (NM_008852)	2822.0	NM_007703	12686.0	Mm.21806	NM_007703	ENSMUSG00000038754	Elovl3	CIN-2|Cig30	elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-82874359-4	chr8	82874247	82874447	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177378, intron 1 of 6)	ORR1D2|LTR|ERVL-MaLR	10991.0	NM_177378	330812.0	Mm.491438	NM_177378	ENSMUSG00000047747	Rnf150	A630007N06Rik|C030044C12Rik|Greul5|mKIAA1214	ring finger protein 150	protein-coding	6.13759722131281	6.34553698405278	6.14315727911474	6.16143575946235	4.64604409472931	6.08377278280493	5.09869825828224	5.72633098535237	-0.793161773758494	0.00714653039335591	0.0860308411299172
Merged-chr7-43464957-2	chr7	43464857	43465057	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001290316, exon 3 of 10)	exon (NM_001290316, exon 3 of 10)	1724.0	NM_001290316	75690.0	Mm.30200	NM_001290316	ENSMUSG00000070604	Vsig10l	-	V-set and immunoglobulin domain containing 10 like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-32184741-4	chr6	32184628	32184828	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175750, intron 22 of 31)	intron (NM_175750, intron 22 of 31)	134440.0	NM_029587	76382.0	Mm.23510	NM_029587	ENSMUSG00000029766	1700012A03Rik	AI429084	RIKEN cDNA 1700012A03 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-192770682-4	chr1	192770601	192770801	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144881, intron 1 of 11)	CpG	518.0	NM_144881	226861.0	Mm.145857	NM_144881	ENSMUSG00000037375	Hhat	2810432O22Rik|AI462858|AP-2CRE|Skn|Tg(TFAP2A-cre)1Will	hedgehog acyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-10817573-2	chr17	10817473	10817673	+	890.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_027032, intron 1 of 4)	L1MA7|LINE|L1	22618.0	NM_027032	69310.0	Mm.18889	NM_027032	ENSMUSG00000037196	Pacrg	1700008H23Rik	PARK2 co-regulated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-56614888-2	chr13	56614788	56614988	+	688.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_155548, intron 2 of 16)	intron (NR_155548, intron 2 of 16)	5302.0	NR_155548	21810.0	Mm.14455	NM_009369	ENSMUSG00000035493	Tgfbi	68kDa|AI181842|AI747162|Beta-ig|big-h3	transforming growth factor, beta induced	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-65942213-1	chr3	65942113	65942313	+	780.0	f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	16036.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133612959-1	chr4	133612859	133613059	+	800.5	f1_c57bl6.idr	exon (NM_001017968, exon 6 of 8)	exon (NM_001017968, exon 6 of 8)	-10791.0	NM_018754	55948.0	Mm.44482	NM_018754	ENSMUSG00000047281	Sfn	Er|Mme1|Ywhas	stratifin	protein-coding	1.99243114117089	2.0412768725705	0.786716238241682	1.80233399576279	0.955739681678837	0.809592317263651	0.790898377958632	1.18919172795739	-3.10840131984236	0.0301707605931454	0.237985525162746
Merged-chr11-116589442-1	chr11	116589342	116589542	+	544.0	f1_balb.idr	Intergenic	Intergenic	-4245.0	NR_033223	11298.0	Mm.42233	NM_009591	ENSMUSG00000020804	Aanat	AA-NAT|Nat-2|Nat4|Snat	arylalkylamine N-acetyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-45003752-1	chr2	45003652	45003852	+	669.0	f0_balb.idr	intron (NM_001355291, intron 4 of 9)	intron (NM_001355291, intron 4 of 9)	19425.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-87805696-2	chr6	87805596	87805796	+	568.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_104478, intron 1 of 2)	intron (NR_104478, intron 1 of 2)	4061.0	NM_133717	69834.0	Mm.37380	NM_133717	ENSMUSG00000030055	Rab43	1810048P08Rik|2500004H21Rik|AW490415	RAB43, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-40063444-2	chr10	40063344	40063544	+	890.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 3 of 5)	intron (NM_001114332, intron 3 of 5)	-38176.0	NM_144821	215929.0	Mm.55513	NM_144821	ENSMUSG00000038522	Mfsd4b1	AI317395|AI482555|Naglt1a	major facilitator superfamily domain containing 4B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-30848353-2	chr3	30848253	30848453	+	868.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-7597.0	NM_001134386	71862.0	Mm.272019	NM_027965	ENSMUSG00000037661	Gpr160	1700025D19Rik|GPCR150	G protein-coupled receptor 160	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-69135756-4	chr2	69135654	69135854	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181547)	promoter-TSS (NM_181547)	-46.0	NM_181547	329416.0	Mm.90047	NM_181547	ENSMUSG00000034738	Nostrin	Daip2|mDaIP2	nitric oxide synthase trafficker	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-4425440-2	chr13	4425340	4425540	+	597.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	-8903.0	NM_030611	83702.0	Mm.196666	NM_030611	ENSMUSG00000021210	Akr1c6	3alpha-HSD|Akr1c1|Hsd17b5	aldo-keto reductase family 1, member C6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24705320-2	chr17	24705220	24705420	+	703.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145396, intron 6 of 21)	intron (NM_145396, intron 6 of 21)	2333.0	NM_145396	213773.0	Mm.100353	NM_145396	ENSMUSG00000040688	Tbl3	9430070M15Rik	transducin (beta)-like 3	protein-coding	-0.200265953459633	-0.180379148269556	-0.186826989645732	0.854853019945008	-0.199006186759531	-0.178934364365384	-0.185399408883068	0.41885889626708	-1.13583151389303	0.641713410507252	1
Merged-chr7-97798266-4	chr7	97798168	97798368	+	959.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357364, intron 1 of 14)	L2c|LINE|L2	9727.0	NM_001357364	18479.0	Mm.260227	NM_011035	ENSMUSG00000030774	Pak1	AW045634|PAK-1|Paka	p21 (RAC1) activated kinase 1	protein-coding	2.18111413063427	2.03058430626647	1.31888808507812	1.73686375736591	2.19967833834524	3.02539475757211	2.4983686812731	2.51613909880667	1.73624318121208	0.0541797774323072	0.341232350934934
Merged-chr6-108625097-4	chr6	108624995	108625195	+	801.104187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104577, intron 1 of 6)	intron (NR_104577, intron 1 of 6)	-1928.0	NR_040757	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-92921021-4	chr1	92920827	92921027	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_181405)	TTS (NM_181405)	10102.0	NM_181405	108657.0	Mm.200971	NM_181405	ENSMUSG00000026269	Rnpepl1	1110014H17Rik|AI894167	arginyl aminopeptidase (aminopeptidase B)-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-98357429-4	chr7	98357324	98357524	+	953.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168541, intron 2 of 3)	intron (NM_001168541, intron 2 of 3)	3864.0	NM_001168540	244152.0	Mm.25317	NM_001024619	ENSMUSG00000049580	Tsku	9530051K01Rik|E2ig4|Lrrc54|Tsk	tsukushi, small leucine rich proteoglycan	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-82994274-6	chr6	82994092	82994292	+	996.888916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033079, intron 4 of 9)	RSINE1|SINE|B4	39279.0	NM_010070	13448.0	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-118614807-3	chr5	118614735	118614935	+	666.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347445, intron 2 of 30)	intron (NM_001347445, intron 2 of 30)	54116.0	NM_172424	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-32431705-2	chr18	32431605	32431805	+	623.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001083334, exon 12 of 15)	exon (NM_001083334, exon 12 of 15)	-53421.0	NR_045403	402767.0	Mm.385109	NR_045403	ENSMUSG00000097413	A830052D11Rik	-	RIKEN cDNA A830052D11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-136571594-2	chr1	136571494	136571694	+	698.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53307.0	NM_177643	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-116709019-1	chr4	116708919	116709119	+	589.0	f0_balb.idr	promoter-TSS (NM_025962)	promoter-TSS (NM_025962)	424.0	NR_151451	68394.0	Mm.425201	NM_026714	ENSMUSG00000028689	Ccdc163	0610037D15Rik|4933430J04Rik	coiled-coil domain containing 163	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55556565-2	chr14	55556465	55556665	+	611.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-3464.0	NR_037572	28199.0	Mm.11535	NM_133734	ENSMUSG00000022214	Dcaf11	0710008A13Rik|C76035|D14Ucla1|Dacf11|GLO14|Wdr23	DDB1 and CUL4 associated factor 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-121707724-2	chr11	121707624	121707824	+	672.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144797, intron 1 of 3)	intron (NM_144797, intron 1 of 3)	5297.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-137826818-1	chr6	137826718	137826918	+	596.0	f0_balb.idr	intron (NM_172733, intron 6 of 8)	intron (NM_172733, intron 6 of 8)	72241.0	NM_172733	232449.0	Mm.29181	NM_172733	ENSMUSG00000030225	Dera	2010002D22Rik|2500002K03Rik|DEOC	deoxyribose-phosphate aldolase (putative)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-18670741-4	chr19	18670649	18670849	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026120)	promoter-TSS (NM_026120)	-31.0	NM_026120	67383.0	Mm.306602	NM_026120	ENSMUSG00000024726	Carnmt1	2410127L17Rik	carnosine N-methyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-59109223-3	chr10	59109144	59109344	+	765.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172788, intron 8 of 9)	ERVL-B4-int|LTR|ERVL	112603.0	NM_001024911	103080.0	Mm.346842	NM_001024910	ENSMUSG00000019917	Sept10	4921515A04Rik|9430099J10Rik|AA408298|AI874685	septin 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-20816023-3	chr5	20815921	20816121	+	906.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172992, intron 2 of 17)	intron (NM_172992, intron 2 of 17)	66103.0	NM_172992	68770.0	Mm.86410	NM_172992	ENSMUSG00000039987	Phtf2	1110054G21Rik|9530062N20Rik|AI447096|C77923	putative homeodomain transcription factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-101909196-4	chr13	101909111	101909311	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-140994.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85687005-7	chr12	85686849	85687049	+	948.0714109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_016767, exon 1 of 3)	exon (NM_016767, exon 1 of 3)	229.0	NM_016767	53314.0	Mm.6672	NM_016767	ENSMUSG00000034266	Batf	B-ATF|SFA-2	basic leucine zipper transcription factor, ATF-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-63448055-4	chr14	63447922	63448122	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177628, intron 2 of 3)	intron (NM_177628, intron 2 of 3)	11628.0	NM_177628	219148.0	Mm.37882	NM_177628	ENSMUSG00000035095	Fam167a	A030013D21	family with sequence similarity 167, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-103322556-2	chr11	103322456	103322656	+	731.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17B2|LTR|ERVK	22146.0	NM_133715	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70466872-4	chr11	70466833	70467033	+	941.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001348337)	TTS (NM_001348337)	-6949.0	NM_023158	66102.0	Mm.425692	NM_023158	ENSMUSG00000018920	Cxcl16	0910001K24Rik|AV290116|BB024863|CXCL16v1|CXCL16v2|SR-PSOX|Zmynd15|b2b498Clo	chemokine (C-X-C motif) ligand 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-18840742-2	chr2	18840642	18840842	+	549.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4A|LINE|L1	-38924.0	NR_131254	66774.0	Mm.87075	NR_131254	ENSMUSG00000097638	Carlr	4933439G12Rik|Carl	cardiac and apoptosis-related long non-coding RNA	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75054300-4	chr11	75054191	75054391	+	999.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001002764, intron 13 of 18)	intron (NM_001002764, intron 13 of 18)	11700.0	NR_030454	735274.0		NR_030454	ENSMUSG00000106252	Mir684-1	Mirn684-1	microRNA 684-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-58804411-3	chr9	58804352	58804552	+	958.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	-19060.0	NM_001081192	330953.0	Mm.151967	NM_001081192	ENSMUSG00000032338	Hcn4	Bcng3|Hcn3	hyperpolarization-activated, cyclic nucleotide-gated K+ 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-75369228-4	chr18	75369129	75369329	+	884.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001042660, exon 1 of 4)	exon (NM_001042660, exon 1 of 4)	1864.0	NM_001042660	17131.0	Mm.34407	NM_008543	ENSMUSG00000025880	Smad7	Madh7	SMAD family member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-54146254-3	chr11	54146159	54146359	+	928.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45335.0	NM_011031	18452.0	Mm.3705	NM_011031	ENSMUSG00000018906	P4ha2	AA407196|C76437|P4hl	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-81057924-4	chr3	81057814	81058014	+	977.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019971, intron 1 of 5)	MT2A|LTR|ERVL	21498.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-9038528-4	chr3	9038427	9038627	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23437.0	NR_040597	75149.0	Mm.399324	NR_040597	ENSMUSG00000103116	4930539M17Rik	-	RIKEN cDNA 4930539M17 gene	ncRNA	6.26047164582458	6.21963478475858	5.59459147262438	5.83776122193034	5.47880424551388	5.76637765082587	5.76184910271024	5.88255551800038	-0.311029583477558	0.219737270451155	0.710826235364411
Merged-chr9-123754525-2	chr9	123754425	123754625	+	549.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12686.0	NM_009913	12769.0	Mm.440604	NM_009913	ENSMUSG00000029530	Ccr9	A130091K22Rik|Cmkbr10|GPR-9-6	chemokine (C-C motif) receptor 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6227288-2	chr19	6227188	6227388	+	558.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_198168)	TTS (NM_198168)	887.0	NM_130453	170458.0	Mm.379306	NM_130453	ENSMUSG00000024784	Gpha2	GPA2|zsig51	glycoprotein hormone alpha 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-35396332-3	chr7	35396242	35396442	+	658.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028120)	promoter-TSS (NM_028120)	425.0	NM_178643	101831.0	Mm.389855	NM_178643	ENSMUSG00000030493	Faap24	AW124591|AW538696|C230052I12Rik	Fanconi anemia core complex associated protein 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-53468867-2	chr10	53468767	53468967	+	543.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50122.0	NR_037973	100502868.0	Mm.297722	NR_037973	ENSMUSG00000112739	Gm20597	B230314j19	predicted gene, 20597	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-56748042-1	chr13	56747942	56748142	+	611.0	f0_balb.idr	Intergenic	L2c|LINE|L2	44374.0	NM_001164042	17129.0	Mm.272920	NM_008541	ENSMUSG00000021540	Smad5	1110051M15Rik|AI451355|Dwf-C|Madh5|MusMLP	SMAD family member 5	protein-coding	0.273596931070401	0.302537584067247	0.814994246002252	1.41531808983297	0.275440761830867	0.304627495375294	0.825766577977838	0.482206350470227	-1.60221450200239	0.387659971652969	1
Merged-chr17-83790218-2	chr17	83790118	83790318	+	935.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_054082, intron 12 of 16)	RLTR28|LTR|ERVL	56572.0	NM_025325	107766.0	Mm.30100	NM_025325	ENSMUSG00000000673	Haao	0610007K21Rik|0610012J07Rik|3-HAO|3-HAOxase|3HAO	3-hydroxyanthranilate 3,4-dioxygenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-90682255-2	chr15	90682107	90682307	+	594.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2819.0	NM_001357979	66871.0	Mm.290991	NM_025815	ENSMUSG00000052560	Cpne8	1200003E11Rik|1500031E20Rik	copine VIII	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36720110-4	chr18	36719997	36720197	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6718.0	NM_009841	12475.0	Mm.3460	NM_009841	ENSMUSG00000051439	Cd14	-	CD14 antigen	protein-coding	6.07666128264779	5.85791975868717	5.69220918333053	6.18671316874426	6.46406200811405	6.40880182010665	5.64979176489463	6.10975373486049	0.247070860679864	0.319639664642368	0.821951596143819
Merged-chr1-55511733-4	chr1	55511632	55511832	+	913.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114663, intron 1 of 5)	intron (NM_001114663, intron 1 of 5)	105786.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	3.61221246678322	1.58040173293151	3.51131947103853	3.34872861513452	3.32964735801484	1.59264830172981	2.59208428950394	3.14193604377422	-0.661844108254823	0.426380493749325	0.902023751857747
Merged-chr14-14971251-4	chr14	14971159	14971359	+	979.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195229, intron 29 of 34)	intron (NM_001195229, intron 29 of 34)	150444.0	NM_001195229	674895.0	Mm.317563	NM_001034865	ENSMUSG00000042567	Nek10	Gm282	NIMA (never in mitosis gene a)- related kinase 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-28242318-3	chr2	28242214	28242414	+	733.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36625.0	NM_019498	56177.0	Mm.43278	NM_019498	ENSMUSG00000026833	Olfm1	AMY|AW742568|Noe1|OlfA|Pancortin|Pancortin3	olfactomedin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-123805989-3	chr8	123805882	123806082	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009003)	promoter-TSS (NM_009003)	-14.0	NM_009003	19341.0	Mm.9221	NM_009003	ENSMUSG00000019478	Rab4a	AI848268|Rab4	RAB4A, member RAS oncogene family	protein-coding	1.81967167885927	1.17511036269187	1.13966388886207	1.77314975006169	2.90596352280125	1.47828144550021	3.04017388044082	2.50739658888236	2.65742817064716	0.0106821248058128	0.114280489534513
Merged-chr11-121451903-4	chr11	121451799	121451999	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029878)	promoter-TSS (NM_029878)	-50.0	NM_029878	108903.0	Mm.23686	NM_029878	ENSMUSG00000039230	Tbcd	2310057L06Rik|A030005L14Rik|mKIAA0988	tubulin-specific chaperone d	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-154436763-4	chr2	154436648	154436848	+	971.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172860, intron 1 of 10)	CpG	264.0	NM_009823	12396.0	Mm.29914	NM_009823	ENSMUSG00000038533	Cbfa2t2	A430091M07|C330013D05Rik|Cbfa2t2h|MTGR1	core-binding factor, runt domain, alpha subunit 2, translocated to, 2 (human)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-62939199-2	chr5	62939099	62939299	+	716.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	125376.0	NM_001170705	100322896.0	Mm.479821	NM_001170705	ENSMUSG00000090326	Dthd1	Gm17384	death domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133150161-2	chr4	133150061	133150261	+	596.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153423, intron 1 of 8)	intron (NM_153423, intron 1 of 8)	19528.0	NM_153423	242687.0	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	1.16371961829419	0.362629118587423	0.736059994577188	1.49188596720829	0.510072812564505	0.364903945182488	0.3547032208774	0.345873618606419	-3.81433561929113	0.0355753077634536	1
Merged-chr17-88252121-3	chr17	88252031	88252231	+	774.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	126619.0	NM_001190356	225058.0	Mm.312053	NM_001190356		Gm4832	EG225058	predicted gene 4832	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-17409238-4	chr16	17409137	17409337	+	883.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023348, intron 1 of 4)	intron (NM_023348, intron 1 of 4)	-2923.0	NM_001001983	224020.0	Mm.5718	NM_001001983	ENSMUSG00000041720	Pi4ka	Pik4ca	phosphatidylinositol 4-kinase alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-9608539-4	chr3	9608445	9608645	+	877.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133218, intron 1 of 8)	intron (NM_133218, intron 1 of 8)	1540.0	NM_133218	170753.0	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	3.63389735463692	3.47031462918916	2.93064292093616	3.42618214267063	3.35315983636871	3.18290849040564	3.07565046479858	4.08502740674316	0.161541212191793	0.777405372998542	0.998431161219273
Merged-chr12-33132068-4	chr12	33131928	33132128	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015602, intron 4 of 5)	intron (NR_015602, intron 4 of 5)	15558.0	NR_015602	320046.0	Mm.208337	NR_015602	ENSMUSG00000052125	F730043M19Rik	-	RIKEN cDNA F730043M19 gene	ncRNA	3.87024597200592	3.80402980660995	3.6795893913994	4.15968178408448	3.68534538015288	3.25541379447726	2.55167017728269	3.92193443987091	-0.634152431046178	0.236191454316928	0.732963177322369
Merged-chr5-43841691-9	chr5	43841644	43841844	+	950.796326	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009763, intron 8 of 8)	intron (NM_009763, intron 8 of 8)	22851.0	NM_009763	12182.0	Mm.246332	NM_009763	ENSMUSG00000029082	Bst1	114/A10|A530073F09|BP-3|Bp3|Bsta1|CD157|Ly65	bone marrow stromal cell antigen 1	protein-coding	2.79229451529911	1.68375349322651	2.42527302129636	2.35652599806975	2.87601471694	1.69466628735627	2.65253262058674	1.8025761804568	-0.0166175932238504	0.985235510873698	0.998431161219273
Merged-chr17-33951483-4	chr17	33951341	33951541	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019420)	promoter-TSS (NM_019420)	47.0	NM_019420	54218.0	Mm.11132	NM_019420	ENSMUSG00000067370	B3galt4	Gal-T2|Galt2	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 4	protein-coding	5.71339308736242	5.58624272676555	4.5406400152731	5.94190874993426	6.18719605457792	6.13876175728269	6.87204497864837	6.18063009947568	0.923382457833346	0.00183064530026082	0.0312878665420646
Merged-chr9-66620932-4	chr9	66620834	66621034	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27819.0	NM_001302116	235441.0	Mm.32465	NM_144937	ENSMUSG00000032376	Usp3	AA409661|BC017156	ubiquitin specific peptidase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-24516447-2	chr6	24516347	24516547	+	873.6666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1380.0	NM_172535	214704.0	Mm.61131	NM_172535	ENSMUSG00000046192	Iqub	4932408B21Rik|Trs4	IQ motif and ubiquitin domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-173913064-4	chr1	173912947	173913147	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001301745)	promoter-TSS (NM_001301745)	-1.0	NM_001033450	381308.0	Mm.490248	NM_001033450	ENSMUSG00000026536	Ifi211	A730048F03|Ifi205b|Mnda|ifi-205-B	interferon activated gene 211	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89214883-1	chr3	89214783	89214983	+	645.0	f0_balb.idr	promoter-TSS (NM_013691)	promoter-TSS (NM_013691)	-297.0	NM_013691	21827.0	Mm.2114	NM_013691	ENSMUSG00000028047	Thbs3	TSP3|Thbs-3	thrombospondin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-53809632-4	chr5	53809532	53809732	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144517)	promoter-TSS (NM_144517)	5.0	NM_144517	67249.0	Mm.28823	NM_144517	ENSMUSG00000039178	Tbc1d19	2810453K03Rik	TBC1 domain family, member 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-43528357-2	chr7	43528257	43528457	+	588.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_021293, exon 6 of 6)	3' UTR (NM_021293, exon 6 of 6)	4814.0	NM_001111058	12489.0	Mm.140157	NM_021293	ENSMUSG00000004609	Cd33	Siglec-3|gp67	CD33 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-45227162-2	chr19	45227062	45227262	+	958.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8074.0	NM_010691	16814.0	Mm.116815	NM_010691	ENSMUSG00000025216	Lbx1	Lbx1h	ladybird homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-147275324-2	chr4	147275224	147275424	+	877.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039209, intron 1 of 2)	CpG	99458.0	NM_001039209	195531.0	Mm.270762	NM_001039209	ENSMUSG00000078496	Zfp982	Gm13152	zinc finger protein 982	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-93171336-4	chr10	93171221	93171421	+	968.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146239, intron 1 of 16)	ORR1E|LTR|ERVL-MaLR	8536.0	NR_035452	100316689.0		NR_035452	ENSMUSG00000089214	Mir1931	mir-1931|mmu-mir-1931	microRNA 1931	ncRNA	0.238982147011448	1.28797887766131	0.910032245767621	0.251122812796831	0.90144944203748	0.269615182671176	0.26037319914796	0.252387196356346	-1.54652988380835	0.436364744130151	1
Merged-chr15-83134916-4	chr15	83134804	83135004	+	968.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347082, intron 3 of 7)	intron (NM_001347082, intron 3 of 7)	-12103.0	NM_029101	74778.0	Mm.30056	NM_029101	ENSMUSG00000018040	Rrp7a	1110014J01Rik|AA408146|Kheg1	ribosomal RNA processing 7 homolog A (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-48084542-2	chr17	48084442	48084642	+	557.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_110485, intron 1 of 2)	intron (NR_110485, intron 1 of 2)	-5090.0	NM_026625	68224.0	Mm.138490	NM_026625	ENSMUSG00000021545	1700067P10Rik	-	RIKEN cDNA 1700067P10 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-39229822-2	chr6	39229722	39229922	+	728.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23049.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80647574-4	chr7	80647489	80647689	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173863, intron 2 of 14)	intron (NM_173863, intron 2 of 14)	11572.0	NR_040343	100504375.0	Mm.322881	NR_040343	ENSMUSG00000084821	Gm15880	-	predicted gene 15880	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132840390-1	chr4	132840290	132840490	+	543.0	f1_c57bl6.idr	intron (NM_001355198, intron 2 of 6)	intron (NM_001355198, intron 2 of 6)	2744.0	NM_001355198	100336.0	Mm.105230	NM_146154	ENSMUSG00000028882	Ppp1r8	6330548N22Rik|AU044684|NIPP1	protein phosphatase 1, regulatory (inhibitor) subunit 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-95689169-1	chr9	95689069	95689269	+	739.0	f0_balb.idr	intron (NM_029620, intron 6 of 8)	intron (NM_029620, intron 6 of 8)	51541.0	NM_029620	76477.0	Mm.46016	NM_029620	ENSMUSG00000015354	Pcolce2	2400001O18Rik|Pcpe2	procollagen C-endopeptidase enhancer 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-45826358-4	chr1	45826242	45826442	+	863.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31176.0	NM_028599	73674.0	Mm.270376	NM_028599	ENSMUSG00000025995	Wdr75	1300003A18Rik|2410118I19Rik|C77608	WD repeat domain 75	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-78353371-2	chr10	78353271	78353471	+	587.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1671.0	NM_053014	28169.0	Mm.141230	NM_053014	ENSMUSG00000001211	Agpat3	AW061257|AW493985|D10Jhu12e|lpaat3	1-acylglycerol-3-phosphate O-acyltransferase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-16252896-4	chr19	16252811	16253011	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008139, intron 2 of 6)	intron (NM_008139, intron 2 of 6)	62093.0	NR_105832	102465218.0		NR_105832	ENSMUSG00000098718	Mir496b	Gm28028|mmu-mir-496b	microRNA 496b	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-116964226-3	chr13	116964125	116964325	+	620.972229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081009, intron 3 of 26)	intron (NM_001081009, intron 3 of 26)	61291.0	NM_001081009	52552.0	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	1.73556538983929	1.56473238365301	1.21900412800561	1.76178786895678	0.792486276719446	1.57813442275963	0.825761206990707	0.812259308609975	-2.13373750206928	0.129094592868948	0.562409922019478
Merged-chr7-118447422-2	chr7	118447322	118447522	+	580.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001362179, intron 1 of 7)	intron (NM_001362179, intron 1 of 7)	800.0	NM_001362179	110058.0	Mm.156558	NM_138649	ENSMUSG00000058420	Syt17	Bk|sytXVII	synaptotagmin XVII	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-124311720-2	chr9	124311620	124311820	+	839.6666869999999	f1_balb.idr|f1_c57bl6.idr	exon (NM_001243117, exon 2 of 5)	exon (NM_001243117, exon 2 of 5)	974.0	NM_001243118	630836.0	Mm.458553	NM_001243117	ENSMUSG00000074829	2010315B03Rik	BC029716	RIKEN cDNA 2010315B03 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-99239829-3	chr5	99239699	99239899	+	606.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145839, intron 4 of 13)	intron (NM_145839, intron 4 of 13)	13128.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24521612-2	chr17	24521512	24521712	+	657.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001172113, intron 1 of 20)	intron (NM_001172113, intron 1 of 20)	6326.0	NM_153792	224619.0	Mm.275150	NM_153792	ENSMUSG00000052752	Traf7	RFWD1	TNF receptor-associated factor 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4469780-3	chr16	4469678	4469878	+	839.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49280.0	NM_009624	11515.0	Mm.439750	NM_009624	ENSMUSG00000005580	Adcy9	AC9|ACtp10|AW125421|D16Wsu65e|mKIAA0520	adenylate cyclase 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71523565-1	chr8	71523465	71523665	+	554.0	f1_balb.idr	Intergenic	Intergenic	-11796.0	NM_032398	84094.0	Mm.260768	NM_032398	ENSMUSG00000034845	Plvap	MECA32|Pv1	plasmalemma vesicle associated protein	protein-coding	-0.876696452975164	-0.0941071674816204	-0.869390862733908	-0.872130992475512	-0.876015997503817	-0.85952862213467	-0.868608923695341	-0.6899274698002	-2.26114672083731	0.444909067971246	1
Merged-chr19-12440461-4	chr19	12440335	12440535	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12530.0	NM_019540	56093.0	Mm.285849	NM_019540	ENSMUSG00000040065	Pfpl	Epcs5|Epcs50	pore forming protein-like	protein-coding	4.5777175974588	4.50208506137819	4.76607034211207	4.13754433053974	4.39038123464932	4.16336308587695	3.41274361039354	3.90638536011305	-0.646875138596407	0.127601627993639	0.55901813510261
Merged-chr14-47358579-1	chr14	47358479	47358679	+	550.0	f1_c57bl6.idr	Intergenic	Intergenic	-15281.0	NM_010705	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	0.872438470621596	1.70804937483737	1.53023908356762	0.707554363007451	1.2924105502921	1.72382151673273	0.722658505597756	0.709627313123007	-0.311531914006862	0.833220232887208	0.998431161219273
Merged-chr1-40354788-3	chr1	40354681	40354881	+	647.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356478, intron 8 of 10)	intron (NM_001356478, intron 8 of 10)	30192.0	NM_133193	107527.0	Mm.155583	NM_133193	ENSMUSG00000070942	Il1rl2	AI481289|AW551444|IL-1Rrp2	interleukin 1 receptor-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-38209344-3	chr2	38209249	38209449	+	762.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146122, intron 2 of 21)	ORR1F|LTR|ERVL-MaLR	78035.0	NM_146122	227801.0	Mm.314245	NM_146122	ENSMUSG00000035392	Dennd1a	6030446I19Rik|connecdenn	DENN/MADD domain containing 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-21725494-2	chr18	21725392	21725592	+	995.416626	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-73124.0	NM_001081403	225266.0	Mm.436836	NM_001081403	ENSMUSG00000042514	Klhl14	6330403N15Rik|AI785250|printor	kelch-like 14	protein-coding	1.11062042144926	1.37683161358482	1.29772593975069	1.23179793918914	3.84715920492033	4.36429274936048	5.16422824606044	4.76767453435347	7.64162975612699	7.73771912518978e-12	2.04787839847118e-09
Merged-chr8-111338702-4	chr8	111338605	111338805	+	995.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029005)	promoter-TSS (NM_029005)	-500.0	NM_029005	74568.0	Mm.207971	NM_029005	ENSMUSG00000012519	Mlkl	9130019I15Rik	mixed lineage kinase domain-like	protein-coding	0.969464264602108	1.00552997803837	1.33797891500697	2.08848954885338	1.68168869437092	1.21150400606932	1.73023956669122	1.44728355615592	0.202690550853527	0.876152367207386	0.998431161219273
Merged-chr2-154209292-2	chr2	154209192	154209392	+	567.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001012392, intron 6 of 15)	MER20|DNA|hAT-Charlie	8912.0	NM_153418	228801.0	Mm.3783	NM_153418	ENSMUSG00000027485	Bpifb1	Lplunc1	BPI fold containing family B, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4138132-4	chr19	4138043	4138243	+	935.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144532, intron 3 of 5)	MTD|LTR|ERVL-MaLR	1466.0	NM_144532	73660.0	Mm.379226	NM_144532	ENSMUSG00000024842	Cabp4	2410038D05Rik	calcium binding protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-78080860-4	chr11	78080765	78080965	+	902.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022313)	promoter-TSS (NM_022313)	-482.0	NM_022313	57837.0	Mm.21096	NM_022313	ENSMUSG00000020832	Eral1	2610524P08Rik|9130407C09Rik|AU019798|Era|M-ERA|MERA-S|MERA-W	Era (G-protein)-like 1 (E. coli)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-48830495-3	chr6	48830442	48830642	+	703.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10446.0	NM_023056	65963.0	Mm.28385	NM_023056	ENSMUSG00000029810	Tmem176b	1810009M01Rik|Clast1|Lr8	transmembrane protein 176B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-42962592-4	chr10	42962524	42962724	+	775.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28538.0	NR_153349	327749.0	Mm.428887	NR_153349		Gm5079	C230040G06	predicted gene 5079	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-176813579-4	chr1	176813533	176813733	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1027.0	NR_151682	76816.0	Mm.171399	NM_029756	ENSMUSG00000026504	Sdccag8	2700048G21Rik|5730470G24Rik|Cccap	serologically defined colon cancer antigen 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-84646302-4	chr18	84646213	84646413	+	834.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177450, intron 1 of 11)	intron (NM_177450, intron 1 of 11)	3782.0	NM_177450	338403.0	Mm.23278	NM_177450	ENSMUSG00000056162	Cndp1	AI746433|Cn1	carnosine dipeptidase 1 (metallopeptidase M20 family)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-66475485-2	chr18	66475385	66475585	+	992.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16881.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-76018700-4	chr13	76018647	76018847	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178916)	promoter-TSS (NM_178916)	-35.0	NM_001131069	218341.0	Mm.266515	NM_178916	ENSMUSG00000043190	Rfesd	AI256775|D030068K09	Rieske (Fe-S) domain containing	protein-coding	7.74959733865994	7.99802990975072	7.4474351591772	7.38789573813	7.21178432091694	7.00386133469309	6.59738590679333	7.23031976121571	-0.656652388069459	0.000411214650448213	0.00957390693934862
Merged-chr4-128800669-2	chr4	128800569	128800769	+	754.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081098, intron 1 of 8)	URR1A|DNA|hAT-Charlie	5443.0	NM_001081098	230761.0	Mm.22616	NM_001081098	ENSMUSG00000028799	Zfp362	-	zinc finger protein 362	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-38302417-4	chr15	38302321	38302521	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1710.0	NM_001289471	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-7418068-4	chr19	7417970	7418170	+	935.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175381, intron 1 of 4)	CpG	445.0	NM_175381	108899.0	Mm.386838	NM_175381	ENSMUSG00000053080	2700081O15Rik	AI255177|AI848741|AW742297	RIKEN cDNA 2700081O15 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97402205-2	chr11	97402105	97402305	+	746.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39654.0	NM_138657	192157.0	Mm.34339	NM_138657	ENSMUSG00000038485	Socs7	2310063P06Rik|C85125|Nap4	suppressor of cytokine signaling 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88647206-2	chr3	88647106	88647306	+	646.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001198911, exon 23 of 23)	3' UTR (NM_001198911, exon 23 of 23)	5936.0	NM_181817	242093.0	Mm.269130	NM_181817	ENSMUSG00000049741	Rxfp4	GPCR142|Gpr100|Rln3r2|SALPR	relaxin family peptide receptor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-88059260-4	chr11	88059160	88059360	+	918.5458369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9019.0	NM_016686	22344.0	Mm.46628	NM_016686	ENSMUSG00000018377	Vezf1	AI848691|AW046909|db1	vascular endothelial zinc finger 1	protein-coding	1.00632800774092	0.240895337828784	0.232654266041355	1.18207468411923	0.646374004424522	0.242741910737316	0.23447893122754	0.227363407247058	-2.3440612014116	0.250562804329362	1
Merged-chr11-110731979-3	chr11	110731761	110731961	+	982.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-236172.0	NM_010604	16517.0	Mm.30176	NM_010604	ENSMUSG00000051497	Kcnj16	6430410F18Rik|AI132396|Kir5.1	potassium inwardly-rectifying channel, subfamily J, member 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-44539136-4	chr10	44538995	44539195	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-80347.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-144943499-4	chr7	144943410	144943610	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-3585.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	-0.610409284244982	-0.265850518387057	-0.739679657304392	-0.741906335038564	-0.606752392946458	-0.736125161055686	-0.739041508941971	-0.583333452082031	-1.1337431100966	0.665847913726139	1
Merged-chr18-7869872-4	chr18	7869759	7869959	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001360956, exon 1 of 14)	5' UTR (NM_001360956, exon 1 of 14)	146.0	NM_001360956	225131.0	Mm.204524	NM_153085	ENSMUSG00000024283	Wac	1110067P07Rik|A230035H12Rik|AI256735|AI256776|Wwp4	WW domain containing adaptor with coiled-coil	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-60600376-2	chr13	60600276	60600476	+	603.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1571.0	NM_001285917	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-156203141-4	chr4	156203043	156203243	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_030671)	promoter-TSS (NR_030671)	-141.0	NR_030671	100382.0	Mm.461024	NR_030671		AW011738	-	expressed sequence AW011738	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-49114566-1	chr10	49114466	49114666	+	562.0	f1_balb.idr	intron (NM_001358866, intron 15 of 16)	L1_Mus4|LINE|L1	673371.0	NM_001358866	14806.0	Mm.185993	NM_010349	ENSMUSG00000056073	Grik2	AW124492|C130030K03Rik|GluK2|Glur-6|Glur6|Glurbeta2	glutamate receptor, ionotropic, kainate 2 (beta 2)	protein-coding	-1.8418762459921	-1.8125357239735	-1.82140854000656	-1.82869693527674	-1.56059678980999	-1.8106129477253	-1.81939992894326	-1.82739231600805	1.3620893379502	0.699511506488145	1
Merged-chr8-72587074-2	chr8	72587029	72587229	+	875.25	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_151663, exon 3 of 3)	non-coding (NR_151663, exon 3 of 3)	15306.0	NM_001357279	74166.0	Mm.212927	NM_144534	ENSMUSG00000031791	Tmem38a	1110001E17Rik|AI413399|SPR-27|TRIC-A|mg33a	transmembrane protein 38A	protein-coding	1.66914584775672	1.17279709369089	1.98759233432725	3.27587460588206	1.83254238433398	2.22988464171338	2.49254309958045	1.11434461587715	-0.629367133857457	0.561897576181465	0.960362415684079
Merged-chr4-152281769-2	chr4	152281669	152281869	+	556.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_178406, exon 4 of 6)	exon (NM_178406, exon 4 of 6)	7407.0	NM_178406	100129.0	Mm.23235	NM_178406	ENSMUSG00000042804	Gpr153	1110065N12Rik|AI449320|PGR1	G protein-coupled receptor 153	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-66375033-4	chr9	66374950	66375150	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145617, intron 2 of 77)	intron (NM_145617, intron 2 of 77)	24600.0	NM_145617	235439.0	Mm.244179	NM_145617	ENSMUSG00000038664	Herc1	2810449H11Rik|B230218H07|D130015N03Rik|tbl	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-66079541-4	chr5	66079423	66079623	+	975.9249880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139065, intron 2 of 6)	intron (NM_139065, intron 2 of 6)	18656.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-127324975-2	chr4	127324875	127325075	+	770.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_008126)	TTS (NM_008126)	4150.0	NM_008126	14620.0	Mm.90003	NM_008126	ENSMUSG00000042367	Gjb3	Cnx31|Cx31|D4Wsu144e|Gjb-3	gap junction protein, beta 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-27584703-4	chr3	27584596	27584796	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_037275)	TTS (NR_037275)	299.0	NR_037275	100526525.0		NR_037275	ENSMUSG00000092695	Mir3092	mir-3092|mmu-mir-3092	microRNA 3092	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36274051-2	chr1	36273951	36274151	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153408)	promoter-TSS (NM_153408)	-626.0	NM_153408	214854.0	Mm.389110	NM_153408	ENSMUSG00000047180	Neurl3	2010300P06Rik|Lincr	neuralized E3 ubiquitin protein ligase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-77662906-4	chr10	77662818	77663018	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1A|DNA|hAT-Charlie	21694.0	NR_035451	100316811.0		NR_035451	ENSMUSG00000089424	Mir1930	mir-1930|mmu-mir-1930	microRNA 1930	ncRNA	3.86612503101265	3.50102118060714	2.66914253425983	3.79267800005503	3.22874988464354	3.8514038382128	3.21348502043761	3.68683476408325	-0.0335263252791965	0.952432902598811	0.998431161219273
Merged-chr2-77170007-2	chr2	77169907	77170107	+	738.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025576, intron 1 of 23)	intron (NM_001025576, intron 1 of 23)	628.0	NM_001025576	545428.0	Mm.26579	NM_001025576	ENSMUSG00000044033	Ccdc141	2610301F02Rik|CAMDI	coiled-coil domain containing 141	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-86292293-2	chr15	86292193	86292393	+	812.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358062, intron 2 of 9)	intron (NM_001358062, intron 2 of 9)	14618.0	NM_001358062	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-73767066-2	chr18	73766966	73767166	+	621.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12587.0	NM_053255	114615.0	Mm.50642	NM_053255	ENSMUSG00000036941	Elac1	2610018O07Rik|8430417G19Rik	elaC ribonuclease Z 1	protein-coding	-2.18308165884198	-2.15547475440471	-2.16382331017202	-2.1706810624505	-2.18114370519566	-2.15366558754311	-2.03057248461154	-2.16945352807143	0.759018020146679	0.829933115115583	1
Merged-chr17-80130890-4	chr17	80130787	80130987	+	966.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176963, intron 1 of 6)	intron (NM_176963, intron 1 of 6)	3416.0	NM_176963	319625.0	Mm.29098	NM_176963	ENSMUSG00000035473	Galm	A530057M15Rik|AU015645|AU020959	galactose mutarotase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-54342817-4	chr13	54342672	54342872	+	901.81665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28577.0	NM_009946	12890.0	Mm.268902	NM_009946	ENSMUSG00000025867	Cplx2	921-L|AI413745|AW492120|Gm34843	complexin 2	protein-coding	0.507599863253566	0.552051980254369	0.537875437524132	1.68513948409993	0.706004095175523	0.555200182287624	1.26485901338998	1.69697766672894	0.690781981181443	0.677705164821179	0.994818437932722
Merged-chr9-102521540-4	chr9	102521450	102521650	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024291, intron 4 of 10)	ORR1E|LTR|ERVL-MaLR	15412.0	NM_024291	16716.0	Mm.101692	NM_024291	ENSMUSG00000035606	Ky	CD1|D9Mgc44e|ky	kyphoscoliosis peptidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-84952461-2	chr4	84952361	84952561	+	844.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_175275, intron 3 of 25)	intron (NM_175275, intron 3 of 25)	68152.0	NM_177385	338349.0	Mm.440562	NM_175275	ENSMUSG00000038070	Cntln	AI448092|B430108F07Rik|D530005L17Rik	centlein, centrosomal protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-59159642-2	chr11	59159542	59159742	+	763.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173785, intron 1 of 2)	intron (NM_173785, intron 1 of 2)	4103.0	NM_001270791	216792.0	Mm.266175	NM_173785	ENSMUSG00000049287	Iba57	4930543L23Rik|A230051G13Rik|C1orf69	IBA57 homolog, iron-sulfur cluster assembly	protein-coding	-0.885343988398316	-0.873197811915141	-0.879568534556306	-0.464008891048743	-0.884809499207366	-0.870535133016439	-0.878945546113603	-0.458408536970068	0.0285539633070526	0.992673327504828	1
Merged-chr15-78302891-1	chr15	78302791	78302991	+	618.0	f1_c57bl6.idr	intron (NM_001287389, intron 1 of 11)	intron (NM_001287389, intron 1 of 11)	2830.0	NM_007781	12984.0	Mm.1940	NM_007781	ENSMUSG00000071714	Csf2rb2	AIC2A|BetaIl3|Bil3|Csfgmrb|Il3r|Il3rb|Il3rb2	colony stimulating factor 2 receptor, beta 2, low-affinity (granulocyte-macrophage)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-103417321-2	chr11	103417221	103417421	+	639.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-4657.0	NM_183034	353047.0	Mm.18556	NM_183034	ENSMUSG00000034247	Plekhm1	AP162|B2|BC038943|D330036J23Rik	pleckstrin homology domain containing, family M (with RUN domain) member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-75817153-1	chr13	75817053	75817253	+	865.0	f1_c57bl6.idr	Intergenic	Intergenic	-22732.0	NM_001360151	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	-1.18378942727406	-1.15669478905697	-0.457913181653105	-1.17806440097404	-1.18323730008524	-1.15415234459186	-1.16577117532349	-1.17633933179771	-2.81844548480871	0.412768592413622	1
Merged-chr12-73684852-2	chr12	73684752	73684952	+	739.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008856, intron 2 of 13)	intron (NM_008856, intron 2 of 13)	100056.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99145250-2	chr7	99145150	99145350	+	640.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1A|DNA|hAT-Charlie	-4106.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-5593198-2	chr18	5593098	5593298	+	552.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033552)	promoter-TSS (NR_033552)	551.0	NM_001360981	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-34195558-2	chr10	34195458	34195658	+	884.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172508, intron 1 of 5)	RSINE1|SINE|B4	11993.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-22814117-4	chr11	22814038	22814238	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45597.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25270607-2	chr7	25270507	25270707	+	550.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001302811, intron 1 of 20)	intron (NM_001302811, intron 1 of 20)	2908.0	NM_001302811	71722.0	Mm.28833	NM_027882	ENSMUSG00000005442	Cic	1200010B10Rik|mKIAA0306	capicua transcriptional repressor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-53809041-4	chr11	53808921	53809121	+	812.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033332, intron 3 of 3)	intron (NR_033332, intron 3 of 3)	38548.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64342354-4	chr5	64342263	64342463	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 17 of 18)	intron (NM_001289514, intron 17 of 18)	112006.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	6.02527879853766	6.23399056166273	6.59760396985374	6.21211325082357	5.86874904177385	5.01078127619641	6.30548342706341	5.57352292344413	-0.559214896839103	0.041923830360396	0.293010941746037
Merged-chr2-30687043-2	chr2	30686943	30687143	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9032.0	NR_136917	665635.0	Mm.450149	NR_136917		Gm14486	-	predicted gene 14486	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-94630291-4	chr13	94630191	94630391	+	980.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-158652.0	NM_009321	21371.0	Mm.379025	NM_009321	ENSMUSG00000042043	Tbca	Tbca13	tubulin cofactor A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-146811909-2	chr5	146811809	146812009	+	566.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16953.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-66174727-3	chr5	66174642	66174842	+	801.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040695, intron 2 of 2)	intron (NR_040695, intron 2 of 2)	16593.0	NR_040695	73639.0	Mm.48851	NR_040695	ENSMUSG00000107014	1700126H18Rik	-	RIKEN cDNA 1700126H18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-100452678-4	chr9	100452566	100452766	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33807.0	NM_001033543	213208.0	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97338751-1	chr11	97338651	97338851	+	595.0	f1_balb.idr	exon (NM_001081220, exon 11 of 11)	exon (NM_001081220, exon 11 of 11)	13322.0	NM_001081220	217143.0	Mm.32622	NM_175453	ENSMUSG00000070337	Gpr179	5330439C02Rik|Gpr158l1	G protein-coupled receptor 179	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-24284391-4	chr19	24284302	24284502	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER20|DNA|hAT-Charlie	-3816.0	NM_008044	14297.0	Mm.7319	NM_008044	ENSMUSG00000059363	Fxn	FA|FARR|Frda|X25	frataxin	protein-coding	4.79176368936042	5.36828611407015	4.8437985394252	5.20884042755233	5.20356746612505	4.23319417303484	5.07615642874764	5.07648050545199	-0.134486693701078	0.693118456846573	0.99740158133691
Merged-chr4-128752379-2	chr4	128752279	128752479	+	604.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001195130, exon 15 of 15)	3' UTR (NM_001195130, exon 15 of 15)	-6879.0	NM_001009819	215493.0	Mm.300900	NM_001009819	ENSMUSG00000028794	A3galt2	Gm433|iGb3|iGb3S	alpha 1,3-galactosyltransferase 2 (isoglobotriaosylceramide synthase)	protein-coding	0.51634575094422	0.404303720039728	0.398469951437506	1.12342452085628	0.387732203641636	0.875525568422054	0.399752684424114	0.988754003429901	0.172377994443823	0.926691742713028	1
Merged-chr12-111758173-2	chr12	111758073	111758273	+	764.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001025358)	promoter-TSS (NM_001025358)	-676.0	NM_001361612	16593.0	Mm.278357	NM_008450	ENSMUSG00000021288	Klc1	AI874768|Kns2	kinesin light chain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89088440-2	chr3	89088340	89088540	+	974.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028188, intron 8 of 10)	intron (NM_028188, intron 8 of 10)	1591.0	NM_001083808	72296.0	Mm.27687	NM_028188	ENSMUSG00000041263	Rusc1	2210403N08Rik|AA408288|NESCA	RUN and SH3 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-88010658-2	chr8	88010558	88010758	+	609.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A|LTR|ERVL-MaLR	-51063.0	NM_033327	94187.0	Mm.23452	NM_033327	ENSMUSG00000045333	Zfp423	Ebfaz|Roaz|Zfp104|Znf423|ataxia1|mKIAA0760|nur12	zinc finger protein 423	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84237244-4	chr8	84237145	84237345	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172503)	promoter-TSS (NM_172503)	-203.0	NM_172503	212168.0	Mm.117094	NM_172503	ENSMUSG00000035671	Zswim4	D330002I24|E130119J17Rik	zinc finger SWIM-type containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-170166462-2	chr2	170166362	170166562	+	966.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-23787.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28445428-2	chr7	28445328	28445528	+	619.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039192, intron 5 of 6)	intron (NM_001039192, intron 5 of 6)	4491.0	NM_001039192	63986.0	Mm.194536	NM_022024	ENSMUSG00000060791	Gmfg	0610039G16Rik|2310057N07Rik|AI324845	glia maturation factor, gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-152734456-2	chr2	152734359	152734559	+	769.799988	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1792.0	NM_010495	15901.0	Mm.444	NM_010495	ENSMUSG00000042745	Id1	AI323524|D2Wsu140e|Idb1|bHLHb24	inhibitor of DNA binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-122849517-4	chr4	122849458	122849658	+	787.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008917, intron 5 of 8)	intron (NM_008917, intron 5 of 8)	13331.0	NM_008917	19063.0	Mm.277719	NM_008917	ENSMUSG00000028657	Ppt1	9530043G02Rik|AA960502|C77813|CLN1|D4Ertd184e|INCL|PPT	palmitoyl-protein thioesterase 1	protein-coding	2.57086526019043	1.91294755151322	3.05056536051272	1.78871867661394	1.24468727318899	2.13123504402571	3.50829509901983	2.73236096824246	0.444244180646352	0.637016588485913	0.982417279970648
Merged-chr5-115272906-4	chr5	115272800	115273000	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016698)	promoter-TSS (NM_016698)	-5.0	NM_001302449	50849.0	Mm.30051	NM_016698	ENSMUSG00000041740	Rnf10	AA675014|RIE2|mKIAA0262	ring finger protein 10	protein-coding	2.78156153991082	3.22644706687873	2.91238422157315	3.42210256782412	3.27913921120985	3.72606982587383	2.81657305440519	2.1044711897229	0.0105351925945613	0.987539765546327	0.998431161219273
Merged-chr8-31150275-4	chr8	31150168	31150368	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199988)	promoter-TSS (NM_001199988)	-48.0	NM_144927	234138.0	Mm.349800	NM_144927	ENSMUSG00000031577	Tti2	-	TELO2 interacting protein 2	protein-coding	7.15527917020771	7.48824508796924	7.71038250136376	7.30188829783395	6.76670388763605	6.93021158391705	6.94366180051857	6.72773924199036	-0.612406824650669	0.000415505858403424	0.00964885023701474
Merged-chr19-38982074-2	chr19	38981974	38982174	+	905.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-24945.0	NM_028089	72082.0	Mm.142581	NM_028089	ENSMUSG00000025002	Cyp2c55	2010318C06Rik	cytochrome P450, family 2, subfamily c, polypeptide 55	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81810270-4	chr15	81810201	81810401	+	972.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153484, intron 1 of 3)	intron (NM_153484, intron 1 of 3)	-1113.0	NM_017376	21685.0	Mm.270278	NM_017376	ENSMUSG00000022389	Tef	2310028D20Rik	thyrotroph embryonic factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80752829-2	chr7	80752721	80752921	+	665.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016721, intron 11 of 37)	intron (NM_016721, intron 11 of 37)	50510.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	1.15342075972173	1.34905455329931	0.543719045230833	0.535522177563853	1.16630846411595	1.24507280719969	0.546047500123239	0.536960068316012	-0.140504011266303	0.934386384429027	0.998431161219273
Merged-chr10-81425457-2	chr10	81425357	81425557	+	818.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026756, intron 1 of 8)	intron (NM_026756, intron 1 of 8)	1716.0	NM_008688	18029.0	Mm.426936	NM_008688	ENSMUSG00000055053	Nfic	1110019L22Rik|1500041O16Rik|AA589446|AI746521|NF1-C	nuclear factor I/C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-53090543-3	chr18	53090451	53090651	+	850.111145	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-85741.0	NM_001357463	67804.0	Mm.252171	NM_026386	ENSMUSG00000034484	Snx2	0610030A03Rik	sorting nexin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122710225-2	chr5	122710125	122710325	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310718, intron 1 of 10)	ID_B1|SINE|B4	2681.0	NM_001310718	18438.0	Mm.290884	NM_011026	ENSMUSG00000029470	P2rx4	AI504491|AW555605|D5Ertd444e|P2X4	purinergic receptor P2X, ligand-gated ion channel 4	protein-coding	-0.0447360766275869	0.433628282200988	-0.0353723543287682	0.36103123477315	0.210799251528792	0.310007737191445	-0.0343608678058205	-0.0382868286350963	-0.650029104431069	0.763468829900876	1
Merged-chr18-46267778-1	chr18	46267678	46267878	+	548.0	f1_balb.idr	intron (NM_172627, intron 2 of 8)	intron (NM_172627, intron 2 of 8)	13072.0	NM_172627	225467.0	Mm.262096	NM_172627	ENSMUSG00000024477	Pggt1b	2010207C17Rik|2610100E13|AI451237|AI551093|BGG1|GGT1	protein geranylgeranyltransferase type I, beta subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-14449404-3	chr11	14449308	14449508	+	650.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger7|DNA|TcMar-Tigger	149817.0	NR_045918	73307.0	Mm.399291	NR_045918	ENSMUSG00000085561	1700046C09Rik	-	RIKEN cDNA 1700046C09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-121035400-3	chr14	121035242	121035442	+	777.583313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134082)	promoter-TSS (NM_134082)	-232.0	NM_134082	223254.0	Mm.223980	NM_134082	ENSMUSG00000025555	Farp1	AW228844|BC030329|Cdep	FERM, RhoGEF (Arhgef) and pleckstrin domain protein 1 (chondrocyte-derived)	protein-coding	0.737766763968667	0.139040443434147	0.446019582464183	0.129436352962526	0.585291744328938	0.140265165606063	0.134810296359783	0.424955190923723	-0.386215610603428	0.84956831038661	1
Merged-chr10-18917327-4	chr10	18917317	18917517	+	848.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	72346.0	NM_022032	64058.0	Mm.28209	NM_022032	ENSMUSG00000019851	Perp	1110017A08Rik|KCP1|KRTCAP1|PIGPC1|THW	PERP, TP53 apoptosis effector	protein-coding	0.638815684745173	0.975258332831516	2.15296779612814	0.44239731355556	0.421644312208069	0.478184139822378	1.62825573049859	0.444899429193007	-1.24976411909563	0.444513649302109	0.912265842646861
Merged-chr1-165211012-4	chr1	165210912	165211112	+	892.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPEY3-int|LTR|ERVK	-16574.0	NR_151712	108735.0	Mm.288369	NM_145512	ENSMUSG00000040848	Sft2d2	2010005O13Rik|AI506168|AW561909|cI-45	SFT2 domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-181232470-4	chr1	181232359	181232559	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20481.0	NM_145514	226757.0	Mm.289082	NM_145514	ENSMUSG00000038733	Wdr26	1600024A01Rik|AA693241|AI447817|AU044014|C77982|Gid7	WD repeat domain 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-21961992-4	chr3	21961906	21962106	+	927.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-114646.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-34827239-2	chr2	34827120	34827320	+	587.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013890)	promoter-TSS (NM_013890)	-985.0	NM_001164772	30050.0	Mm.4465	NM_013890	ENSMUSG00000035949	Fbxw2	2700071L08Rik|FBW2|Fwd2|MD6	F-box and WD-40 domain protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-108460779-4	chr4	108460661	108460861	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175472, intron 2 of 30)	CpG	1335.0	NM_175472	230594.0	Mm.25181	NM_175472	ENSMUSG00000034610	Zcchc11	6030404K05Rik|9230115F04Rik|PPAPD3|mKIAA0191	zinc finger, CCHC domain containing 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-70933666-3	chr13	70933589	70933789	+	783.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50741.0	NM_029873	77166.0	Mm.159859	NM_029873	ENSMUSG00000021600	8030423J24Rik	-	RIKEN cDNA 8030423J24 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-168478132-2	chr2	168478064	168478264	+	898.1666869999999	f0_balb.idr|f1_balb.idr	3' UTR (NM_001136073, exon 11 of 11)	3' UTR (NM_001136073, exon 11 of 11)	112201.0	NM_001291178	18019.0	Mm.116802	NM_010899	ENSMUSG00000027544	Nfatc2	AI607462|NF-ATc2|NF-ATp|NFAT1|NFAT1-D|Nfatp	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2	protein-coding	1.15202571835249	1.28457863529568	2.50358536581316	1.48069026405259	2.20430917183672	3.00465310312649	3.05050545502359	2.88289597646747	2.43138978009069	0.0123501810949302	0.126230760981557
Merged-chr15-98484693-4	chr15	98484595	98484795	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2012.0	NM_010679	16770.0	Mm.5074	NM_010679	ENSMUSG00000022991	Lalba	AW208827|Lyzg	lactalbumin, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-76192049-4	chr16	76191966	76192166	+	980.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER92-int|LTR|ERV1	69453.0	NR_040575	78215.0	Mm.243885	NR_040575		4930578N18Rik	-	RIKEN cDNA 4930578N18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127318248-3	chr10	127318151	127318351	+	892.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3713.0	NM_001285785	216445.0	Mm.227198	NM_146011	ENSMUSG00000040345	Arhgap9	AU043488	Rho GTPase activating protein 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-84762164-2	chr12	84762064	84762264	+	754.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023409, intron 2 of 3)	intron (NM_023409, intron 2 of 3)	10948.0	NM_023409	67963.0	Mm.282556	NM_023409	ENSMUSG00000021242	Npc2	2700012J19Rik|AA408070|AU045843|HE1	NPC intracellular cholesterol transporter 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-31122463-2	chr8	31122333	31122533	+	803.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175136, intron 2 of 5)	intron (NM_175136, intron 2 of 5)	10587.0	NM_175136	68867.0	Mm.29532	NM_175136	ENSMUSG00000039328	Rnf122	1110063C11Rik	ring finger protein 122	protein-coding	0.964243622542291	1.06421987230422	2.6037061129401	1.80992181051259	1.40859355716252	1.59714852887167	2.95743946957927	1.82055981842022	0.719507307117247	0.534430877814666	0.95286627222167
Merged-chr10-120976972-2	chr10	120976872	120977072	+	663.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081193, intron 1 of 12)	intron (NM_001081193, intron 1 of 12)	2358.0	NM_001081193	380664.0	Mm.339371	NM_001081193	ENSMUSG00000048661	Lemd3	AI316861|Man1	LEM domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-96593761-4	chr13	96593656	96593856	+	883.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023420, intron 3 of 17)	intron (NM_023420, intron 3 of 17)	51021.0	NM_023420	68018.0	Mm.24125	NM_023420	ENSMUSG00000021669	Col4a3bp	2810404O15Rik|9230101K08Rik|AU016711|CERT|GPBP	collagen, type IV, alpha 3 (Goodpasture antigen) binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-35510825-1	chr5	35510725	35510925	+	639.0	f1_balb.idr	intron (NM_153107, intron 7 of 10)	intron (NM_153107, intron 7 of 10)	14801.0	NM_153107	242939.0	Mm.108557	NM_153107	ENSMUSG00000036596	Cpz	AV136066	carboxypeptidase Z	protein-coding	-1.58994551673671	-1.55912852307891	-1.56844783632235	-1.57610299769523	-1.18549093183599	-1.55710898902261	-1.56633814807757	-1.57473272746952	1.78703309985663	0.610309988231842	1
Merged-chr8-105805354-2	chr8	105805254	105805454	+	671.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145824, intron 3 of 13)	intron (NM_145824, intron 3 of 13)	21996.0	NM_145824	74334.0	Mm.4206	NM_145824	ENSMUSG00000037415	Ranbp10	4432417N03Rik	RAN binding protein 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-15467848-3	chr17	15467750	15467950	+	868.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30426.0	NM_011185	19170.0	Mm.32912	NM_011185	ENSMUSG00000014769	Psmb1	AA409053|C81484|Lmpc5	proteasome (prosome, macropain) subunit, beta type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-130910239-2	chr4	130910139	130910339	+	837.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	-3095.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-29871582-3	chr11	29871478	29871678	+	862.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146016, intron 7 of 41)	intron (NM_146016, intron 7 of 41)	-45910.0	NM_176829	216622.0	Mm.443260	NM_176829	ENSMUSG00000078157	4931440F15Rik	Fem1ab	RIKEN cDNA 4931440F15 gene	protein-coding	-0.511764310400118	0.253062731976284	-0.502962335140675	-0.0601827624401947	-0.510945381801667	-0.497726744565829	-0.502018919537539	-0.505688655566991	-3.55649862520877	0.183542313126438	1
Merged-chr18-6491114-1	chr18	6491014	6491214	+	1000.0	f0_balb.idr	promoter-TSS (NM_001276350)	promoter-TSS (NM_001276350)	-257.0	NM_001276350	13831.0	Mm.312133	NM_007935	ENSMUSG00000024240	Epc1	2400007E14Rik|5730566F07Rik|A930032N02Rik|mir-1893	enhancer of polycomb homolog 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-52343377-4	chr11	52343269	52343469	+	689.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17493.0	NM_011694	22333.0	Mm.3555	NM_011694	ENSMUSG00000020402	Vdac1	AL033343|Vdac5|mVDAC1|mVDAC5	voltage-dependent anion channel 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-34534085-4	chr5	34533980	34534180	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011893, intron 1 of 12)	intron (NM_011893, intron 1 of 12)	8296.0	NM_011893	24055.0	Mm.5012	NM_011893	ENSMUSG00000054520	Sh3bp2	3BP2	SH3-domain binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-123940833-4	chr9	123940729	123940929	+	999.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER20B|LTR|ERVK	27863.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-56833062-3	chr6	56832919	56833119	+	633.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012056, intron 1 of 9)	intron (NM_012056, intron 1 of 9)	960.0	NM_012056	27055.0	Mm.20943	NM_012056	ENSMUSG00000029781	Fkbp9	1810014L23|AW549641|FKBP-63|FKBP-9|FKBP60|FKBP63|FKBP65RS	FK506 binding protein 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-64330625-4	chr14	64330526	64330726	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253715, intron 1 of 4)	L1MD|LINE|L1	86330.0	NM_001253716	110265.0	Mm.26713	NM_026322	ENSMUSG00000054733	Msra	2310045J23Rik|6530413P12Rik|MSR-A	methionine sulfoxide reductase A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-50789437-5	chr2	50789391	50789591	+	761.700012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-120193.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-38376152-2	chr2	38376052	38376252	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24844.0	NM_010710	16870.0	Mm.142856	NM_010710	ENSMUSG00000000247	Lhx2	LH2A|Lh-2|Lim2|ap|apterous	LIM homeobox protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-3358479-2	chr13	3358379	3358579	+	917.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-119824.0	NR_015522	76937.0	Mm.487240	NR_015522	ENSMUSG00000097709	2810429I04Rik	AI256682	RIKEN cDNA 2810429I04 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-23908845-1	chr5	23908745	23908945	+	640.0	f0_balb.idr	Intergenic	Intergenic	56612.0	NR_028536	100217436.0		NR_028536		Snord93	Gm22397|MBII-336	small nucleolar RNA, C/D box 93	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-56685344-4	chr4	56685223	56685423	+	892.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56102.0	NM_025271	11471.0	Mm.251434	NM_025271	ENSMUSG00000070980	Actl7b	Gm26657|Tact1	actin-like 7b	protein-coding	3.09078479818394	3.82396745771641	2.44189897672957	3.7289386204523	3.7982635237806	4.28457775741198	2.01363476481826	4.30678232842161	0.694974591353274	0.292677176406435	0.797352580046415
Merged-chr3-157297390-3	chr3	157297291	157297491	+	965.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039094, intron 6 of 6)	intron (NM_001039094, intron 6 of 6)	236699.0	NR_152231	381498.0	Mm.402095	NR_152231	ENSMUSG00000105834	4930592C13Rik	Gm1657|Gm43159	RIKEN cDNA 4930592C13 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-3336122-2	chr18	3336022	3336222	+	853.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033457)	promoter-TSS (NR_033457)	-294.0	NR_033457	633947.0	Mm.461446	NR_033457	ENSMUSG00000097746	Gm6225	EG621440	predicted gene 6225	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-35110089-3	chr9	35110005	35110205	+	848.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009178, intron 1 of 10)	intron (NM_009178, intron 1 of 10)	-6623.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36446429-7	chr1	36446334	36446534	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR11B|LTR|ERVK	-1163.0	NM_001310517	214895.0	Mm.287854	NM_001013374	ENSMUSG00000001143	Lman2l	A630028F14Rik|VIP36-like|VIPL	lectin, mannose-binding 2-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123133574-4	chr5	123133447	123133647	+	922.283325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175092)	promoter-TSS (NM_175092)	-918.0	NM_175092	23912.0	Mm.253876	NM_175092	ENSMUSG00000029449	Rhof	AI845056|AV026554|Arhf|Ifld1|Rif	ras homolog family member F (in filopodia)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-139639872-1	chr4	139639772	139639972	+	585.0	f1_c57bl6.idr	intron (NM_175438, intron 8 of 14)	intron (NM_175438, intron 8 of 14)	-4170.0	NR_105987	102465617.0		NR_105987	ENSMUSG00000098569	Mir7020	Gm27759|mmu-mir-7020	microRNA 7020	ncRNA	0.458371844575281	0.326035787536411	1.13326662440604	0.886873460285087	0.302377027452631	0.327875906436335	0.319647834636066	0.99763271175872	-1.15606186557933	0.537102436168086	1
Merged-chr7-81339916-2	chr7	81339816	81340016	+	795.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	5318.0	NM_009092	20068.0	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-12226573-1	chr12	12226473	12226673	+	580.5	f1_balb.idr	Intergenic	Intergenic	-35566.0	NM_029758	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	1.02328623720908	2.00228113480004	0.867482830118882	1.5397932705263	1.03062555953074	1.91506064286301	0.871642180312274	1.8717238084812	0.21918575818758	0.867926507006088	0.998431161219273
Merged-chr7-141048028-1	chr7	141047928	141048128	+	715.5	f0_balb.idr	Intergenic	Intergenic	-13246.0	NM_177897	330671.0	Mm.133741	NM_177897	ENSMUSG00000055629	B4galnt4	BC038881|Gm1095|beta4GalNAcT4	beta-1,4-N-acetyl-galactosaminyl transferase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-77929033-4	chr15	77928915	77929115	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019913)	promoter-TSS (NM_019913)	-21.0	NM_019913	56551.0	Mm.291917	NM_019913	ENSMUSG00000005354	Txn2	2510006J11Rik|AI788873|Trx2	thioredoxin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-71000503-2	chr12	71000403	71000603	+	815.833374	f1_balb.idr|f1_c57bl6.idr	intron (NR_045055, intron 3 of 3)	B1_Mur1|SINE|Alu	15320.0	NR_045056	73204.0	Mm.363770	NR_045055	ENSMUSG00000085622	3110056K07Rik	4921536K06Rik	RIKEN cDNA 3110056K07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99377645-4	chr7	99377547	99377747	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-3871.0	NM_001362168	233552.0	Mm.286317	NM_201352	ENSMUSG00000035314	Gdpd5	BC024955|Gde2	glycerophosphodiester phosphodiesterase domain containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-25739390-2	chr14	25739290	25739490	+	582.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001101433, intron 2 of 3)	intron (NM_001101433, intron 2 of 3)	29466.0	NM_001101433	71918.0	Mm.41904	NM_001101433	ENSMUSG00000055538	Zcchc24	2310047A01Rik	zinc finger, CCHC domain containing 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-11798236-3	chr2	11798136	11798336	+	628.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	20483.0	NM_177268	320816.0	Mm.260201	NM_177268	ENSMUSG00000047909	Ankrd16	2810455F06Rik|AI646698|D430029B21Rik	ankyrin repeat domain 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-77687384-6	chr11	77687267	77687467	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024205, intron 1 of 3)	CpG	1228.0	NM_001024205	68564.0	Mm.428996	NM_001024205	ENSMUSG00000037857	Nufip2	1110001M19Rik|9530056D24Rik|AI256692|AI461731|PIG1|mKIAA1321	nuclear fragile X mental retardation protein interacting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89727246-4	chr3	89727156	89727356	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357958, intron 1 of 14)	intron (NM_001357958, intron 1 of 14)	-3462.0	NM_001146296	56417.0	Mm.316628	NM_019655	ENSMUSG00000027951	Adar	AV242451|Adar1|Adar1p110|Adar1p150|DRADA|mZaADAR	adenosine deaminase, RNA-specific	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99125386-2	chr15	99125286	99125486	+	611.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1459.0	NM_139140	72572.0	Mm.276650	NM_139140	ENSMUSG00000051934	Spats2	2700012F11Rik|59kDa|Scr59|p59	spermatogenesis associated, serine-rich 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-103762497-4	chr14	103762403	103762603	+	717.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63071.0	NR_045148	70898.0	Mm.27548	NR_045148	ENSMUSG00000089707	Slain1os	4921525B02Rik	SLAIN motif family, member 1, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-9262803-2	chr13	9262703	9262903	+	587.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13722.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-147421524-2	chr4	147421424	147421624	+	619.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039209, intron 1 of 2)	intron (NM_001039209, intron 1 of 2)	-131753.0	NM_001014397	433804.0	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154	zinc finger protein 985	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135511045-2	chr4	135510945	135511145	+	966.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_030189, intron 3 of 8)	intron (NM_030189, intron 3 of 8)	15058.0	NM_030189	78806.0	Mm.374844	NM_030189	ENSMUSG00000028801	Stpg1	4930403G18Rik|4930555I21Rik|Mapo2	sperm tail PG rich repeat containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-24389222-1	chr5	24389122	24389322	+	556.0	f0_balb.idr	intron (NM_001002897, intron 5 of 13)	intron (NM_001002897, intron 5 of 13)	2921.0	NM_001002897	213948.0	Mm.332252	NM_001002897	ENSMUSG00000038295	Atg9b	Apg912|Apg9l2|Apgdc2|Gm574|Nos3as|eONE|sONE	autophagy related 9B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-32770095-3	chr19	32769997	32770197	+	894.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008960, intron 1 of 8)	intron (NM_008960, intron 1 of 8)	12520.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	-0.885343988398316	-0.873197811915141	-0.879568534556306	-0.464008891048743	-0.884809499207366	-0.870535133016439	-0.878945546113603	-0.458408536970068	0.0285539633070526	0.992673327504828	1
Merged-chr16-35913755-2	chr16	35913655	35913855	+	739.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-24715.0	NM_030253	80285.0	Mm.49074	NM_030253	ENSMUSG00000022906	Parp9	ARTD9|AW214463|BC003281|Bagl|Bal|PARP-9	poly (ADP-ribose) polymerase family, member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124023207-2	chr5	124023099	124023299	+	660.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177876, intron 1 of 3)	intron (NM_177876, intron 1 of 3)	9061.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-58401917-4	chr9	58401849	58402049	+	926.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	31445.0	NR_040727	73529.0	Mm.490924	NR_040727	ENSMUSG00000100487	1700072B07Rik	-	RIKEN cDNA 1700072B07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-50074513-2	chr18	50074457	50074657	+	920.625	f0_balb.idr|f1_balb.idr	intron (NM_134131, intron 1 of 1)	intron (NM_134131, intron 1 of 1)	-20895.0	NR_155293	102635912.0	Mm.440627	NR_155293		C030005K06Rik	-	RIKEN cDNA C030005K06 gene	ncRNA	0.928581459802055	1.51064435904004	1.2456049644629	1.97301666937562	1.5064148971856	1.01905871840009	2.35369646573462	2.68716008607525	1.56438372259885	0.188431367621472	0.666771396595289
Merged-chr7-45638865-3	chr7	45638746	45638946	+	924.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_152217)	promoter-TSS (NR_152217)	-88.0	NR_152217	100126243.0	Mm.440600	NR_152217	ENSMUSG00000110357	A030001D20Rik	1110025D03Rik	RIKEN cDNA A030001D20 gene	ncRNA	2.91351600497644	1.79892895792968	2.90313703079201	2.88774452564042	2.37425456285543	1.28608287891063	1.24908394091991	1.69388185990295	-2.15646041597302	0.0287403558096062	0.230089049602083
Merged-chr8-106149185-4	chr8	106149066	106149266	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1188.0	NM_133792	192654.0	Mm.284770	NM_133792	ENSMUSG00000031903	Pla2g15	ACS|C87498|LLPL|Lpla2|Lypla3	phospholipase A2, group XV	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-19784655-4	chr8	19784594	19784794	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001270553, intron 6 of 9)	CpG	55118.0	NM_001039553	626415.0	Mm.425517	NM_001039553	ENSMUSG00000096265	4930467E23Rik	TSAP	RIKEN cDNA 4930467E23 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-36834768-4	chr19	36834676	36834876	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163635, intron 1 of 26)	CpG	544.0	NM_001163635	74493.0	Mm.249310	NM_001163635	ENSMUSG00000024811	Tnks2	5430432P15Rik|AA517131|AI662480|ARTD6|TNKS-2|Tank2	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-54957233-2	chr12	54957133	54957333	+	682.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013815, intron 3 of 26)	L1MB8|LINE|L1	29103.0	NM_013815	217578.0	Mm.479583	NM_013815	ENSMUSG00000035021	Baz1a	Acf1|B930060C03|BC065123|Gtl5|Wcrf180|cbp146	bromodomain adjacent to zinc finger domain 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-18632405-2	chr5	18632305	18632505	+	578.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4A|LINE|L1	-271992.0	NM_010305	14677.0	Mm.254629	NM_010305	ENSMUSG00000057614	Gnai1	AU046200|Gialpha1|Gnai-1	guanine nucleotide binding protein (G protein), alpha inhibiting 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-49319209-4	chr6	49319117	49319317	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175098)	promoter-TSS (NM_175098)	-57.0	NM_175098	57895.0	Mm.32416	NM_175098	ENSMUSG00000050786	Ccdc126	6330407D12Rik|AA675040|AI465320|AL022711	coiled-coil domain containing 126	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64337279-3	chr5	64337176	64337376	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 16 of 18)	intron (NM_001289514, intron 16 of 18)	106919.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	4.44535846598972	4.00560135462903	4.28143893971643	2.65003115515568	3.73438498112638	3.71907964329975	3.40631624039953	3.97678228830332	-0.39641636771951	0.459457594434038	0.920256758657899
Merged-chr4-139312897-2	chr4	139312797	139312997	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025337, intron 1 of 6)	B2_Mm2|SINE|B2	2153.0	NM_025337	110198.0	Mm.482154	NM_025337	ENSMUSG00000028743	Akr7a5	0610025K21Rik|Afar|Afar1|Akr7a2	aldo-keto reductase family 7, member A5 (aflatoxin aldehyde reductase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-57764500-4	chr9	57764386	57764586	+	980.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007713, intron 1 of 12)	CpG	1374.0	NM_007713	102414.0	Mm.25720	NM_007713	ENSMUSG00000032316	Clk3	AI256811	CDC-like kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88407933-2	chr3	88407833	88408033	+	816.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025928, intron 1 of 4)	RSINE1|SINE|B4	2464.0	NM_001310605	67037.0	Mm.36715	NM_025928	ENSMUSG00000028066	Pmf1	2600009M07Rik|AL033286|AW060657	polyamine-modulated factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-34189562-4	chr7	34189465	34189665	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026549, intron 4 of 6)	intron (NM_026549, intron 4 of 6)	7105.0	NM_026549	68079.0	Mm.38173	NM_026549	ENSMUSG00000002635	Pdcd2l	6030457N17Rik	programmed cell death 2-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-56756820-2	chr18	56756720	56756920	+	953.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49007.0	NM_010721	16906.0	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-53333297-2	chr19	53333197	53333397	+	602.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001008543, intron 2 of 5)	intron (NM_001008543, intron 2 of 5)	2889.0	NM_001008543	17859.0	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-79567390-4	chr3	79567308	79567508	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_152118)	promoter-TSS (NR_152118)	271.0	NM_001162999	329679.0	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-80163914-4	chr18	80163807	80164007	+	997.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12425.0	NM_175028	240442.0	Mm.26594	NM_175028	ENSMUSG00000053950	Adnp2	8430420L05Rik|BC024969|Kiaa0863|Zfp508|mKIAA0863	ADNP homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-60540189-2	chr11	60540089	60540289	+	629.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172943, intron 1 of 3)	intron (NM_172943, intron 1 of 3)	2506.0	NM_172943	268420.0	Mm.262056	NM_172943	ENSMUSG00000042650	Alkbh5	AW050020|AW215868|Abh5|E130207K11|Ofoxd	alkB homolog 5, RNA demethylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140721008-3	chr5	140720910	140721110	+	841.244446	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-3117.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-94391034-3	chr11	94391005	94391205	+	850.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029600, intron 1 of 30)	intron (NM_029600, intron 1 of 30)	1871.0	NM_029600	76408.0	Mm.23942	NM_029600	ENSMUSG00000020865	Abcc3	1700019L09Rik|ABC31|MLP2|MOAT-D|MRP3	ATP-binding cassette, sub-family C (CFTR/MRP), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-15265692-1	chr18	15265592	15265792	+	709.333313	f0_balb.idr	Intergenic	Intergenic	-114246.0	NM_134112	106931.0	Mm.329299	NM_134112	ENSMUSG00000036225	Kctd1	4933402K10Rik|AI661543|AW553000	potassium channel tetramerisation domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-122293186-4	chr3	122293097	122293297	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_030439)	TTS (NR_030439)	506.0	NR_030439	791077.0		NR_030439	ENSMUSG00000076456	Mir760	Mirn760|mir-760|mmu-mir-760	microRNA 760	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-77095220-4	chr5	77095117	77095317	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159901)	promoter-TSS (NM_001159901)	50.0	NM_001159901	74318.0	Mm.181852	NM_175606	ENSMUSG00000059325	Hopx	1110018K11Rik|1200015P04Rik|2300002F06Rik|AI848177|AW490897|Cameo|Hdop|Hod|Hop|Ob1|Obl|Toto	HOP homeobox	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-120507203-2	chr5	120507103	120507303	+	861.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3580.0	NM_023625	71772.0	Mm.100065	NM_023625	ENSMUSG00000029598	Plbd2	1300012G16Rik|AU019810|P76	phospholipase B domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111538066-4	chr12	111537976	111538176	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173363)	promoter-TSS (NM_173363)	-25.0	NM_178041	217869.0	Mm.271222	NM_173363	ENSMUSG00000021282	Eif5	2810011H21Rik|D12Ertd549e	eukaryotic translation initiation factor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-120100769-2	chr2	120100669	120100869	+	650.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133838, intron 4 of 5)	intron (NM_133838, intron 4 of 5)	53806.0	NM_133838	98878.0	Mm.132226	NM_133838	ENSMUSG00000027293	Ehd4	2210022F10Rik|AI197390|AI846352|AV006278|Past2	EH-domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-33115488-2	chr4	33115388	33115588	+	594.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17068.0	NM_008075	14408.0	Mm.14116	NM_008075	ENSMUSG00000028280	Gabrr1	GABA-C	gamma-aminobutyric acid (GABA) C receptor, subunit rho 1	protein-coding	0.318677934111785	-0.316121796939667	-0.320621291183538	-0.32409402702331	0.331322051847464	-0.315107779543456	-0.319628743977455	-0.32348726480789	0.0419906371069014	0.98733725566035	1
Merged-chr8-77435203-4	chr8	77435112	77435312	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030113, intron 3 of 22)	intron (NM_030113, intron 3 of 22)	-81844.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-37954241-2	chr18	37954141	37954341	+	581.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010411, intron 2 of 14)	intron (NM_010411, intron 2 of 14)	747.0	NM_010411	15183.0	Mm.20521	NM_010411	ENSMUSG00000024454	Hdac3	AW537363	histone deacetylase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-14910957-2	chr8	14910857	14911057	+	754.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172751)	promoter-TSS (NM_172751)	-706.0	NM_172751	234094.0	Mm.240298	NM_172751	ENSMUSG00000071176	Arhgef10	6430549H08Rik|mKIAA0294	Rho guanine nucleotide exchange factor (GEF) 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-106416915-3	chr8	106416824	106417024	+	644.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011764, intron 1 of 3)	intron (NM_011764, intron 1 of 3)	1585.0	NM_011764	22751.0	Mm.295582	NM_011764	ENSMUSG00000031907	Zfp90	6430515L01Rik|KRAB17|NK10|Zfp64|Zfp83|mKIAA1954	zinc finger protein 90	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-103725907-4	chr5	103725765	103725965	+	971.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28297.0	NM_133919	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-68465695-3	chr2	68465616	68465816	+	821.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016866, intron 1 of 17)	intron (NM_016866, intron 1 of 17)	6265.0	NM_016866	53416.0	Mm.198414	NM_016866	ENSMUSG00000027030	Stk39	AW227544|AW556857|DCHT|RF005|Rnl5|SPAK	serine/threonine kinase 39	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-69185493-3	chr12	69185395	69185595	+	684.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_146035, exon 1 of 1)	exon (NM_146035, exon 1 of 1)	1337.0	NM_146035	217664.0	Mm.206642	NM_146035	ENSMUSG00000043998	Mgat2	AA407964|CDGS2|GLCNACTII|GNT-II|GNT2	mannoside acetylglucosaminyltransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122892511-2	chr5	122892411	122892611	+	636.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001003953, intron 12 of 22)	intron (NM_001003953, intron 12 of 22)	7839.0	NM_013910	30841.0	Mm.86406	NM_013910	ENSMUSG00000029475	Kdm2b	Cxxc2|Fbl10|Fbxl10|Jhdm1b|PCCX2	lysine (K)-specific demethylase 2B	protein-coding	-0.240478969301541	-0.668842809963586	-0.50772719116281	-0.673914205041979	-0.542594959983778	-0.484873533330158	-0.671081375068077	-0.673530425075	-1.12678655395215	0.665013838678361	1
Merged-chr16-32161119-2	chr16	32161019	32161219	+	731.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347181, intron 1 of 2)	intron (NM_001347181, intron 1 of 2)	4475.0	NM_146069	224109.0	Mm.33498	NM_146069	ENSMUSG00000052384	Nrros	E430025L02Rik|Lrcc33|Lrrc33	negative regulator of reactive oxygen species	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83078481-6	chr6	83078393	83078593	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197992, intron 1 of 8)	CpG	103.0	NM_197992	69837.0	Mm.12261	NM_197992	ENSMUSG00000069678	Pcgf1	2010002K04Rik|AU024121|Nspc1	polycomb group ring finger 1	protein-coding	5.0284534086078	5.15768711334784	5.1107581352682	3.56750563087637	5.09091065539805	4.90408585137535	4.61200503202016	4.70762664970267	-0.00345284121647631	0.99303389762943	0.998431161219273
Merged-chr1-13589400-4	chr1	13589297	13589497	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028173, intron 1 of 10)	CpG	513.0	NM_028173	72265.0	Mm.28765	NM_028173	ENSMUSG00000025935	Tram1	1810049E02Rik|TRAMP	translocating chain-associating membrane protein 1	protein-coding	3.21020764549597	3.15085331204901	3.53925226831859	3.14503235310843	2.49895337602809	2.65696358800075	2.96215188158466	3.58718385792388	-0.455536204153193	0.470873376050434	0.92584289530549
Merged-chr11-103344140-1	chr11	103344040	103344240	+	562.0	f1_c57bl6.idr	promoter-TSS (NR_045346)	promoter-TSS (NR_045346)	562.0	NM_133715	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	0.402610669302469	-0.126744456697349	-0.131383152381827	-0.134955138090626	-0.139992802591662	0.224890595559285	-0.130360928141138	0.389294574432864	0.625391388896237	0.791457481440132	1
Merged-chr5-35735027-1	chr5	35734927	35735127	+	657.0	f1_balb.idr	intron (NM_001359895, intron 1 of 17)	intron (NM_001359895, intron 1 of 17)	4960.0	NM_001359895	231147.0	Mm.290429	NM_194344	ENSMUSG00000036553	Sh3tc1	4631428G15|BC024909	SH3 domain and tetratricopeptide repeats 1	protein-coding	-1.50874880059862	-1.47511716453926	-1.4852876488768	-1.49364198752927	-1.50638792193216	-0.992828729615453	-1.48298527415345	-1.4921465649048	2.3185461113984	0.50391666537493	1
Merged-chr11-60199897-4	chr11	60199784	60199984	+	829.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_105886)	TTS (NR_105886)	733.0	NR_105886	102465555.0		NR_105886	ENSMUSG00000098547	Mir6921	Gm27352|mmu-mir-6921	microRNA 6921	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27821538-2	chr17	27821420	27821620	+	870.083374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271511)	promoter-TSS (NM_001271511)	-978.0	NM_001271511	224647.0	Mm.196577	NM_001033279	ENSMUSG00000056692	D17Wsu92e	AU020189|C030010A15|C80239	DNA segment, Chr 17, Wayne State University 92, expressed	protein-coding	2.71462675603073	2.75380305083225	2.55417534180669	2.85675448518134	2.65745829668156	1.55448044056369	2.45248233087404	2.60245277428391	-0.683396511243291	0.388237497708844	0.87798849897156
Merged-chr10-62340326-4	chr10	62340235	62340435	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_038038)	promoter-TSS (NR_038038)	86.0	NM_001146100	15275.0	Mm.196605	NM_010438	ENSMUSG00000037012	Hk1	BB404130|Hk-1|Hk1-s|dea|mHk1-s	hexokinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-136141166-3	chr4	136141068	136141268	+	934.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2654.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	2.53363765825604	2.94143104292304	1.93218798032628	1.41842607472681	2.45967715668481	2.76096244108862	2.86480244081485	2.94001891599781	0.870170818258521	0.29913610211221	0.800409222377854
Merged-chr10-7045839-4	chr10	7045739	7045939	+	922.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	-22654.0	NM_001033391	320495.0	Mm.331674	NM_001033391	ENSMUSG00000064065	Ipcef1	A130090K04Rik	interaction protein for cytohesin exchange factors 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101903611-2	chr7	101903511	101903711	+	688.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081679, intron 1 of 3)	intron (NM_001081679, intron 1 of 3)	174.0	NM_001282088	791260.0	Mm.475469	NM_001081679	ENSMUSG00000078630	Tomt	Comt2|F930017I19Rik	transmembrane O-methyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-91763984-3	chr12	91763889	91764089	+	969.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 1 of 6)	B1_Mur3|SINE|Alu	22447.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-61443758-2	chr15	61443658	61443858	+	669.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	330693.0	NR_040350	432956.0	Mm.404918	NR_040350	ENSMUSG00000116031	D030024E09Rik	-	RIKEN cDNA D030024E09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-8738078-6	chr16	8737970	8738170	+	942.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003918, intron 1 of 30)	CpG	272.0	NM_001003918	252870.0	Mm.295330	NM_001003918	ENSMUSG00000022710	Usp7	2210010O09Rik|AA409944|AA617399|AU019296|AW548146|C80752|Hausp	ubiquitin specific peptidase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69605977-4	chr11	69605892	69606092	+	940.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013415)	promoter-TSS (NM_013415)	-32.0	NM_013415	11932.0	Mm.235204	NM_013415	ENSMUSG00000041329	Atp1b2	Amog|Atpb-2	ATPase, Na+/K+ transporting, beta 2 polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-116943395-4	chr8	116943307	116943507	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177700)	promoter-TSS (NM_177700)	14.0	NM_177700	234776.0	Mm.259736	NM_177700	ENSMUSG00000047388	Atmin	Asciz|gpg6|mKIAA0431	ATM interactor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-108566730-3	chr5	108566622	108566822	+	874.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16695.0	NM_007756	12889.0	Mm.5195	NM_007756	ENSMUSG00000033615	Cplx1	921-S	complexin 1	protein-coding	0.696338596024119	2.00275157389051	1.22374539908577	2.50398141393862	0.931041996679336	1.64052190691238	0.751704460517495	0.731496702602937	-2.22898835864343	0.107637569545787	0.513338286288941
Merged-chr3-98025698-4	chr3	98025590	98025790	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010928, intron 1 of 33)	intron (NM_010928, intron 1 of 33)	12152.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-110244885-3	chr11	110244803	110245003	+	895.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166557, intron 5 of 6)	MLT1A1|LTR|ERVL-MaLR	6873.0	NM_147218	76184.0	Mm.159704	NM_147218	ENSMUSG00000044749	Abca6	6330565N06Rik	ATP-binding cassette, sub-family A (ABC1), member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-136876206-1	chr4	136876106	136876306	+	1000.0	f1_c57bl6.idr	Intergenic	B3|SINE|B2	9971.0	NM_009777	12260.0	Mm.2570	NM_009777	ENSMUSG00000036905	C1qb	-	complement component 1, q subcomponent, beta polypeptide	protein-coding	0.675702447121218	1.89576987230309	1.71320869105459	0.701366487823042	0.67959925556851	0.739139664694971	2.01446421273898	1.28968467705762	-0.197619419489411	0.897105159531812	0.998431161219273
Merged-chr15-14018538-2	chr15	14018438	14018638	+	750.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	-844863.0	NM_007666	12563.0	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-135747570-2	chr1	135747470	135747670	+	602.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360782, intron 4 of 5)	B2_Mm2|SINE|B2	18403.0	NM_007791	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-137046149-4	chr5	137046035	137046235	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007457)	promoter-TSS (NM_007457)	-27.0	NM_007457	11769.0	Mm.833	NM_007457	ENSMUSG00000004849	Ap1s1	AP19	adaptor protein complex AP-1, sigma 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115575194-2	chr5	115575098	115575298	+	748.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_172719, exon 4 of 58)	exon (NM_172719, exon 4 of 58)	-5751.0	NR_105996	102466790.0		NR_105996	ENSMUSG00000099047	Mir7029	Gm27293|mmu-mir-7029	microRNA 7029	ncRNA	1.53560636250313	1.49789554921553	2.70875614337786	2.0299280276395	1.94130430722521	1.50713905467686	2.22103932998093	2.04053627279442	-0.261795220270776	0.792483269242233	0.998431161219273
Merged-chr16-71468410-2	chr16	71468310	71468510	+	648.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	218506.0	NR_040576	78221.0	Mm.399298	NR_040576		4930567J20Rik	-	RIKEN cDNA 4930567J20 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-140627358-2	chr6	140627258	140627458	+	998.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001309436, intron 1 of 8)	RSINE1|SINE|B4	473.0	NM_001309436	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-139166416-4	chr4	139166323	139166523	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A0|LTR|ERVL-MaLR	14232.0	NR_033543	100038595.0	Mm.385206	NR_033543	ENSMUSG00000073739	Gm16287	-	predicted gene 16287	ncRNA	6.27964891947548	6.89507242389281	6.45305449357028	6.13062676020174	4.23966782373734	4.87043249995545	4.71266303726176	5.46030966211729	-1.76487528994643	3.56218368310604e-09	4.93143228806611e-07
Merged-chr2-164462092-2	chr2	164461992	164462192	+	706.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025575, intron 2 of 3)	intron (NM_025575, intron 2 of 3)	1121.0	NM_025575	66460.0	Mm.44218	NM_025575	ENSMUSG00000045503	Sys1	2610042O14Rik|AI266964|C87389	SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)	protein-coding	0.451981226445017	0.31684252911244	0.308280024417215	1.1727868564501	0.457029223683285	0.318761294507127	0.511030081194254	1.18260804940842	0.217810827059151	0.902287469339038	1
Merged-chr12-79131603-2	chr12	79131503	79131703	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009705, intron 1 of 7)	intron (NM_009705, intron 1 of 7)	815.0	NM_009705	11847.0	Mm.3506	NM_009705	ENSMUSG00000021125	Arg2	AII|AU022422	arginase type II	protein-coding	1.01504805757923	1.13724108239043	0.744418444973831	1.41643903745325	1.14306170245019	0.970645694105666	0.943320833985705	1.60447923894054	0.413313922205359	0.760264781353347	0.998431161219273
Merged-chr12-77060218-4	chr12	77060130	77060330	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-97982.0	NM_001146176	17187.0	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-41207630-4	chr9	41207519	41207719	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040392, intron 1 of 4)	intron (NR_040392, intron 1 of 4)	1464.0	NR_040392	78500.0	Mm.275715	NR_040392	ENSMUSG00000100837	1700063D05Rik	-	RIKEN cDNA 1700063D05 gene	ncRNA	5.13575600131668	4.56991830490571	5.54159573499474	4.60294969146375	4.69499689105153	4.48194713629449	4.80419965412505	4.53191849142984	-0.475793597651991	0.187373304292213	0.664995221281668
Merged-chr10-19044070-4	chr10	19043984	19044184	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR16|LTR|ERVK	-28674.0	NM_009397	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-73541048-4	chr2	73540933	73541133	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11546.0	NM_153138	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-116777245-3	chr4	116777133	116777333	+	986.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146151, intron 4 of 10)	L2|LINE|L2	30326.0	NM_026654	68276.0	Mm.30534	NM_026654	ENSMUSG00000028688	Toe1	4930584N22Rik|4933424D16Rik|AI413517	target of EGR1, member 1 (nuclear)	protein-coding	4.42361276501718	4.63611092734004	3.5063949807021	4.8596835982232	4.24251304037666	4.61628069493988	3.42716811308999	5.03988407891803	0.0121887619246743	0.97926131740395	0.998431161219273
Merged-chr2-75737409-4	chr2	75737289	75737489	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32726.0	NM_010902	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	2.64507947155534	2.84975390846402	3.40007163012933	3.38490348204363	2.6687903320398	4.19463472233721	3.42647579032476	3.67904619056658	0.770364596429674	0.21150018256477	0.700512509175108
Merged-chr1-24686425-4	chr1	24686338	24686538	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026719, intron 2 of 15)	MIR|SINE|MIR	7520.0	NM_001310483	68421.0	Mm.336563	NM_026719	ENSMUSG00000073725	Lmbrd1	0910001K20Rik|AV347960	LMBR1 domain containing 1	protein-coding	3.41461383731036	4.3325096986266	4.19914057122682	2.78196759732866	3.64668209477997	3.275096873257	3.73119527055361	4.10963451569884	-0.124767300783318	0.820574242689003	0.998431161219273
Merged-chr16-49909670-4	chr16	49909536	49909736	+	935.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010581, intron 9 of 9)	intron (NM_010581, intron 9 of 9)	-46194.0	NR_153658	100503490.0	Mm.72499	NR_153658		Gm19723	-	predicted gene, 19723	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-53612265-4	chr6	53612164	53612364	+	873.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001327821, intron 7 of 10)	intron (NM_001327821, intron 7 of 10)	38890.0	NM_172728	231991.0	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	3.70082717460559	3.79001893577516	3.42004870149918	3.41010575604944	3.4849650875687	4.02652833863459	3.90128377508662	2.91626800618885	0.0800444315045264	0.880059528648332	0.998431161219273
Merged-chr12-86798356-2	chr12	86798256	86798456	+	687.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	63987.0	NM_001195767	627607.0	Mm.341880	NM_001195767	ENSMUSG00000059114	Lrrc74a	EG627607|Gm6772|Lrrc74	leucine rich repeat containing 74A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141404980-4	chr4	141404878	141405078	+	946.93335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019701, intron 18 of 19)	intron (NM_019701, intron 18 of 19)	-6272.0	NM_024412	12733.0	Mm.167900	NM_024412	ENSMUSG00000033770	Clcnka	C75963|CLC-K1|Clcnk1	chloride channel, voltage-sensitive Ka	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-59389321-3	chr19	59389223	59389423	+	755.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43543.0	NM_001033222	107368.0	Mm.27250	NM_001033222	ENSMUSG00000074746	Pdzd8	A630041P07Rik|AV329468|AW228944|Pdzk8	PDZ domain containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-120775472-4	chr5	120775366	120775566	+	995.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145226, intron 1 of 15)	intron (NM_145226, intron 1 of 15)	2193.0	NM_145226	246727.0	Mm.204887	NM_145226	ENSMUSG00000032661	Oas3	Oasl10	2'-5' oligoadenylate synthetase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-66143018-1	chr5	66142918	66143118	+	866.0	f1_c57bl6.idr	intron (NM_001127382, intron 2 of 7)	B2_Mm2|SINE|B2	7960.0	NM_001291226	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	2.94870806739728	4.58456520834985	1.85049828711574	3.75695850229794	1.67558158086569	2.84673384082279	1.27805944243156	1.5352722444208	-2.83717701685493	0.0013142589783196	0.0243090635486309
Merged-chr9-118557054-3	chr9	118556961	118557161	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_018748, exon 15 of 24)	exon (NM_018748, exon 15 of 24)	-49648.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-133310552-3	chr3	133310459	133310659	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293641, intron 1 of 11)	CpG	449.0	NM_001293641	74776.0	Mm.210305	NM_146141	ENSMUSG00000028013	Ppa2	1110013G13Rik|Sid6306	pyrophosphatase (inorganic) 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-33265442-4	chr4	33265290	33265490	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20C2_MM|LTR|ERVK	-16603.0	NM_001033225	108767.0	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-85278872-1	chr1	85278772	85278972	+	632.0	f1_balb.idr	Intergenic	Intergenic	-8306.0	NM_001037909	620078.0	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik	RIKEN cDNA C130026I21 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98954734-4	chr11	98954640	98954840	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009024, intron 2 of 8)	intron (NM_009024, intron 2 of 8)	-5731.0	NM_001176528	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-109779414-6	chr8	109779292	109779492	+	996.05835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301211, intron 1 of 22)	intron (NM_001301211, intron 1 of 22)	809.0	NM_001301211	11765.0	Mm.37210	NM_009677	ENSMUSG00000031731	Ap1g1	AA409002|AU041323|AW551707|Adtg|D8Ertd374e	adaptor protein complex AP-1, gamma 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-80154563-2	chr12	80154463	80154663	+	794.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-21719.0	NR_033514	69548.0	Mm.269712	NR_033514		2310015A10Rik	5330419I17Rik	RIKEN cDNA 2310015A10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-48170711-2	chr17	48170611	48170811	+	763.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-3454.0	NM_178796	328830.0	Mm.470939	NM_178796	ENSMUSG00000043939	A530064D06Rik	Trem4|pdctrem	RIKEN cDNA A530064D06 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-155989865-1	chr4	155989765	155989965	+	635.0	f1_c57bl6.idr	3' UTR (NM_080445, exon 1 of 1)	3' UTR (NM_080445, exon 1 of 1)	2813.0	NM_080445	117592.0	Mm.440185	NM_080445	ENSMUSG00000050796	B3galt6	BB129894|GalTII	UDP-Gal:betaGal beta 1,3-galactosyltransferase, polypeptide 6	protein-coding	1.31255514709051	0.673013036199559	0.651586086038711	2.16712473795982	1.02830090708161	2.28927718496066	0.656387866904133	0.63746712798146	0.0167569067920334	0.991163248144701	0.998431161219273
Merged-chr17-25894149-3	chr17	25894039	25894239	+	746.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139154, intron 2 of 6)	intron (NM_139154, intron 2 of 6)	8088.0	NR_028042	100043160.0	Mm.482893	NR_028042		Gm10012	-	cytochrome c oxidase, subunit VIIc pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-4260665-4	chr11	4260592	4260792	+	992.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008501, intron 1 of 3)	intron (NM_008501, intron 1 of 3)	3124.0	NM_008501	16878.0	Mm.4964	NM_008501	ENSMUSG00000034394	Lif	-	leukemia inhibitory factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-45285284-2	chr2	45285184	45285384	+	548.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-167842.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-19088599-4	chr10	19088483	19088683	+	970.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53166.0	NR_038021	100504265.0	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-149624032-1	chr3	149623932	149624132	+	939.0	f0_balb.idr	Intergenic	Intergenic	349295.0	NR_040591	381482.0	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118795064-2	chr9	118794964	118795164	+	599.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 3 of 13)	intron (NM_001113514, intron 3 of 13)	83372.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-13526822-2	chr2	13526722	13526922	+	797.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010067, intron 2 of 10)	B2_Mm2|SINE|B2	17842.0	NM_010067	13434.0	Mm.6979	NM_010067	ENSMUSG00000026723	Trdmt1	Dnmt2|Rnmt2	tRNA aspartic acid methyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-79487469-5	chr14	79487395	79487595	+	799.700012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007920, intron 1 of 8)	intron (NM_007920, intron 1 of 8)	-6227.0	NM_018765	22380.0	Mm.476813	NM_018765	ENSMUSG00000022023	Wbp4	AW545037|BB101031|FBP21	WW domain binding protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25737062-2	chr7	25736962	25737162	+	791.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_178089, intron 7 of 7)	B3|SINE|B2	17697.0	NM_144922	232989.0	Mm.254223	NM_144922	ENSMUSG00000040725	Hnrnpul1	E130317O14Rik|E1B-AP5|E1BAP5|Hnrnpul|Hnrpul1	heterogeneous nuclear ribonucleoprotein U-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-83527415-4	chr17	83527316	83527516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13083.0	NM_001159529	20463.0	Mm.30072	NM_009187	ENSMUSG00000024248	Cox7a2l	COX7AR|COX7RP|EB1|SIG-81|SIG81|Silg81	cytochrome c oxidase subunit VIIa polypeptide 2-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-58968202-1	chr4	58968102	58968302	+	811.5	f0_c57.idr	intron (NM_025968, intron 9 of 9)	intron (NM_025968, intron 9 of 9)	18876.0	NM_025968	67103.0	Mm.34497	NM_025968	ENSMUSG00000028378	Ptgr1	2510002C21Rik|Ltb4dh|Zadh3	prostaglandin reductase 1	protein-coding	0.916547205093787	1.31116372882138	0.769403955057607	0.39576561221331	0.385195205520943	1.1029594280391	0.405260720545304	0.397062320739288	-1.40168962836843	0.434541803370064	1
Merged-chr5-104948107-1	chr5	104948007	104948207	+	752.0	f0_balb.idr	intron (NM_030239, intron 13 of 15)	intron (NM_030239, intron 13 of 15)	34610.0	NM_030239	27405.0	Mm.389663	NM_030239	ENSMUSG00000029299	Abcg3	Abcp2|Mxr2	ATP binding cassette subfamily G member 3	protein-coding	0.241733991903664	0.272948732344711	0.262905093597711	1.27426058627054	0.24373311214965	0.275189831434066	0.663871713108694	1.28507553137834	0.379017159145691	0.84714981660449	1
Merged-chr17-31560158-4	chr17	31560066	31560266	+	953.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16_Mm|LTR|ERVK	-4607.0	NR_027493	18771.0	Mm.259295	NM_016670	ENSMUSG00000006705	Pknox1	D17Wsu76e|PREP1	Pbx/knotted 1 homeobox	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-40680648-4	chr12	40680506	40680706	+	890.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 12 of 52)	L1MC4|LINE|L1	234553.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133189262-2	chr4	133189162	133189362	+	736.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153423, intron 5 of 8)	intron (NM_153423, intron 5 of 8)	-6393.0	NR_105984	102466215.0		NR_105984	ENSMUSG00000099202	Mir7017	Gm27945|mmu-mir-7017	microRNA 7017	ncRNA	1.22320349557928	0.666603586992258	1.77094771926415	0.639929854302137	1.23605587554401	0.669916100465302	1.78887992884203	0.642001450898015	0.0412372911742624	0.979229965647612	0.998431161219273
Merged-chr1-180853563-2	chr1	180853463	180853663	+	748.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_145943, intron 1 of 6)	intron (NM_145943, intron 1 of 6)	2412.0	NM_145943	208768.0	Mm.272625	NM_145943	ENSMUSG00000038806	Sde2	-	SDE2 telomere maintenance homolog (S. pombe)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-103532959-4	chr12	103532827	103533027	+	799.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028980, intron 1 of 24)	intron (NM_028980, intron 1 of 24)	362.0	NM_028980	74521.0	Mm.248619	NM_028980	ENSMUSG00000021209	Ppp4r4	8430415E04Rik|mKIAA1622	protein phosphatase 4, regulatory subunit 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-28700718-2	chr12	28700596	28700796	+	707.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161410, intron 8 of 11)	intron (NM_001161410, intron 8 of 11)	21371.0	NR_105902	102465980.0		NR_105902	ENSMUSG00000098579	Mir6937	Gm27448|mmu-mir-6937	microRNA 6937	ncRNA	0.508410619035561	0.212540335129157	0.203027648578916	0.19558186587222	0.184891842086407	0.214663995287444	1.10674650966197	1.29794330856392	3.04760179508883	0.133577111002362	1
Merged-chr11-73321283-3	chr11	73321183	73321383	+	971.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023113, intron 2 of 5)	RLTR45|LTR|ERVK	3354.0	NM_023113	11484.0	Mm.293574	NM_023113	ENSMUSG00000020774	Aspa	Acy-2|Acy2|nur7	aspartoacylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-34346419-2	chr14	34346319	34346519	+	875.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_027380)	TTS (NR_027380)	1364.0	NR_027380	100041231.0	Mm.425871	NR_027380		Gm3219	-	B-cell CLL/lymphoma 7C pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-4987440-3	chr18	4987353	4987553	+	997.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59136.0	NM_153153	225115.0	Mm.136791	NM_153153	ENSMUSG00000024236	Svil	AU024053|B430302E16Rik	supervillin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-43739830-3	chr13	43739714	43739914	+	883.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23023.0	NR_046022	622552.0	Mm.375036	NR_046022	ENSMUSG00000110016	Gm20751	-	predicted gene, 20751	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-89608790-1	chr18	89608690	89608890	+	540.0	f1_c57bl6.idr	intron (NM_001039173, intron 1 of 7)	intron (NM_001039173, intron 1 of 7)	160346.0	NM_001039173	623279.0	Mm.447164	NM_001039173	ENSMUSG00000073514	Dok6	Dok-6	docking protein 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-55869567-2	chr16	55869467	55869667	+	571.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001134457, intron 2 of 5)	intron (NM_001134457, intron 2 of 5)	25712.0	NM_001134457	385658.0	Mm.310635	NM_001134457	ENSMUSG00000075033	Nxpe3	Fam55c|Gm1752|Gm611	neurexophilin and PC-esterase domain family, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-123510739-1	chr3	123510639	123510839	+	1000.0	f1_c57bl6.idr	Intergenic	Intergenic	-2403.0	NR_028574	69895.0	Mm.260791	NR_028574	ENSMUSG00000104960	Snhg8	1110065M07Rik|2010109N14Rik	small nucleolar RNA host gene 8	ncRNA	0.882616722344071	0.473039951159367	0.988890522353648	0.453806550838128	0.764886897251133	0.475450194398241	0.676540566184029	1.67135816252503	1.26396140666245	0.437990051426596	0.908612234382228
Merged-chr13-109230556-2	chr13	109230456	109230656	+	774.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011056, intron 3 of 16)	intron (NM_011056, intron 3 of 16)	-94188.0	NR_030644	100124489.0		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-135422470-2	chr3	135422370	135422570	+	816.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025902, intron 1 of 2)	intron (NM_025902, intron 1 of 2)	963.0	NM_025902	67006.0	Mm.269993	NM_025902	ENSMUSG00000028165	Cisd2	1500009M05Rik|1500026J14Rik|1500031D15Rik|AI848398|B630006A20Rik|Miner1|Naf-1|Noxp70|Zcd2	CDGSH iron sulfur domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-19670044-2	chr5	19669944	19670144	+	629.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001170746, intron 1 of 22)	intron (NM_001170746, intron 1 of 22)	-237474.0	NM_001170745	50791.0	Mm.332231	NM_015823	ENSMUSG00000040003	Magi2	AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705	membrane associated guanylate kinase, WW and PDZ domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-74947874-2	chr5	74947774	74947974	+	930.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1320.0	NR_045866	619945.0	Mm.359372	NM_001037908	ENSMUSG00000072874	Gm6116	EG619945	predicted gene 6116	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-4215029-2	chr8	4214929	4215129	+	645.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_207203, exon 6 of 7)	exon (NM_207203, exon 6 of 7)	2283.0	NM_207203	73072.0	Mm.477379	NM_207203	ENSMUSG00000064125	Prr36	-	proline rich 36	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-20146169-2	chr11	20146070	20146270	+	629.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(GGAA)n|Simple_repeat|Simple_repeat	-33219.0	NM_146243	66713.0	Mm.259045	NM_146243	ENSMUSG00000020152	Actr2	4921510D23Rik|AA409782|Arp2|D6Ertd746e	ARP2 actin-related protein 2	protein-coding	2.03998229436664	2.92476599492809	2.72823914575428	2.75096862410552	2.54049684124243	2.59972095386562	2.37717796164229	3.15765795769006	0.122187145097033	0.869521219415247	0.998431161219273
Merged-chr8-34815359-3	chr8	34815256	34815456	+	668.688904	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176933, intron 1 of 3)	intron (NM_176933, intron 1 of 3)	7746.0	NM_176933	319520.0	Mm.170276	NM_176933	ENSMUSG00000031530	Dusp4	2700078F24Rik|AI844617|BB104621|E130306H24Rik|MKP2	dual specificity phosphatase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-100051656-2	chr12	100051556	100051756	+	630.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164426, intron 2 of 2)	intron (NM_001164426, intron 2 of 2)	-60675.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-8878553-1	chr10	8878453	8878653	+	901.0	f1_c57bl6.idr	intron (NM_175155, intron 1 of 19)	intron (NM_175155, intron 1 of 19)	7517.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0.820554575496665	1.13982139854688	2.02782229617533	0.470150943538014	0.452613634135768	0.50078091812628	1.24132698755212	0.472276747079498	-2.14288766061988	0.192193057212017	0.670655636962211
Merged-chr12-111372862-2	chr12	111372762	111372962	+	568.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183016, intron 1 of 36)	B1_Mus2|SINE|Alu	4856.0	NM_183016	217866.0	Mm.27397	NM_183016	ENSMUSG00000021279	Cdc42bpb	MRCKb	CDC42 binding protein kinase beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-66534509-2	chr6	66534417	66534617	+	893.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019499)	promoter-TSS (NM_019499)	-704.0	NM_019499	56150.0	Mm.489653	NM_019499	ENSMUSG00000029910	Mad2l1	AA673185|MAD2	MAD2 mitotic arrest deficient-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-32989616-3	chr19	32989531	32989731	+	938.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-167481.0	NR_039552	100628575.0		NR_039552	ENSMUSG00000106278	Mir3970	mmu-mir-3970|mu-mir-3970	microRNA 3970	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-21268095-1	chr19	21267995	21268195	+	981.0	f1_balb.idr	Intergenic	Intergenic	-4183.0	NM_009551	22682.0	Mm.292405	NM_009551	ENSMUSG00000024750	Zfand5	2310057A04Rik|5830475F03Rik|AA415485|Za20d2|Zfp216	zinc finger, AN1-type domain 5	protein-coding	-0.637349555308875	-0.627923148353279	-0.463172655673739	-0.633411966445524	-0.274933886705635	-0.627221236599995	-0.189674210697045	-0.632996085345475	2.25854587647127	0.40305144906489	1
Merged-chr16-23383187-3	chr16	23383068	23383268	+	689.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45965.0	NM_001004151	239766.0	Mm.208751	NM_001004151	ENSMUSG00000033383	Rtp1	Gm1766|Gm604	receptor transporter protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-33555597-6	chr17	33555492	33555692	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053214)	promoter-TSS (NM_053214)	-115.0	NM_053214	17916.0	Mm.42019	NM_053214	ENSMUSG00000024300	Myo1f	C330006B10Rik	myosin IF	protein-coding	3.37307471355314	4.14968577070717	4.07781095125532	4.63059291161134	3.74551365466638	3.3131854228905	3.19674755347719	4.04554763608572	-0.705670323719552	0.166031243022545	0.631325645610976
Merged-chr4-59806308-1	chr4	59806208	59806408	+	921.6666869999999	f0_balb.idr	intron (NM_172468, intron 1 of 8)	CpG	658.0	NM_172468	209131.0	Mm.259705	NM_172468	ENSMUSG00000028385	Snx30	4732481H14Rik|C030041J06Rik	sorting nexin family member 30	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-12216461-2	chr18	12216359	12216559	+	607.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008720, intron 4 of 24)	RLTR11C_MM|LTR|ERVK	19927.0	NM_008720	18145.0	Mm.3484	NM_008720	ENSMUSG00000024413	Npc1	A430089E03Rik|C85354|D18Ertd139e|D18Ertd723e|lcsd|nmf164|spm	NPC intracellular cholesterol transporter 1	protein-coding	0.994307744909718	0.5039183954483	1.2199029473503	0.486990271199818	0.476417942755115	0.506051681289662	1.23342097586045	1.07613119895738	0.130270468486242	0.940622361911712	1
Merged-chr8-25978694-2	chr8	25978594	25978794	+	569.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1950.0	NM_029884	52120.0	Mm.28326	NM_029884	ENSMUSG00000037260	Hgsnat	9430010M12Rik|AW208455|D8Ertd354e|Tmem76	heparan-alpha-glucosaminide N-acetyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133873839-1	chr4	133873739	133873939	+	608.0	f0_balb.idr	intron (NM_009097, intron 2 of 21)	G-rich|Low_complexity|Low_complexity	892.0	NM_001285506	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	-2.18138529563533	-2.15523716995652	-2.1631445789866	-2.16963996020037	-2.05513010215571	-2.15352360143315	-2.16135451490766	-2.16847729006863	0.759018020146679	0.829933115115583	1
Merged-chr4-46120933-2	chr4	46120833	46121033	+	782.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355375, intron 6 of 9)	intron (NM_001355375, intron 6 of 9)	17542.0	NM_173033	272027.0	Mm.249594	NM_173033	ENSMUSG00000035495	Tstd2	3010020C06	thiosulfate sulfurtransferase (rhodanese)-like domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56254735-2	chr17	56254635	56254835	+	987.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-2058.0	NM_010192	14154.0	Mm.290813	NM_010192	ENSMUSG00000043683	Fem1a	AW611390|Fem1aa	feminization 1 homolog a (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141370763-4	chr7	141370663	141370863	+	958.43335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-5653.0	NR_033532	320871.0	Mm.475463	NM_177280	ENSMUSG00000086844	B230206H07Rik	-	RIKEN cDNA B230206H07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-5871538-4	chr13	5871421	5871621	+	946.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10032.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132493804-2	chr4	132493704	132493904	+	649.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144907, intron 9 of 9)	intron (NM_144907, intron 9 of 9)	16652.0	NM_144907	230784.0	Mm.23608	NM_144907	ENSMUSG00000028893	Sesn2	HI95|SEST2|Ses2	sestrin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-10841018-4	chr17	10840911	10841111	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027032)	promoter-TSS (NM_027032)	652.0	NM_016694	50873.0	Mm.311110	NM_016694	ENSMUSG00000023826	Park2	PRKN	Parkinson disease (autosomal recessive, juvenile) 2, parkin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-54879859-1	chr12	54879759	54879959	+	841.0	f1_balb.idr	Intergenic	MER119|DNA|hAT-Charlie	-16982.0	NM_007688	12632.0	Mm.276826	NM_007688	ENSMUSG00000062929	Cfl2	-	cofilin 2, muscle	protein-coding	1.11531311347117	1.8926504583437	0.756049545394504	2.11573121368768	2.37676018274875	0.78364470105114	0.761118687912765	0.74114418127393	-0.475239573853851	0.842571940877214	0.998431161219273
Merged-chr2-78870745-2	chr2	78870645	78870845	+	571.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356395, intron 2 of 5)	intron (NM_001356395, intron 2 of 5)	1067.0	NR_151457	22193.0	Mm.1485	NM_009454	ENSMUSG00000027011	Ube2e3	Ubce4|ubcM2	ubiquitin-conjugating enzyme E2E 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-148978277-4	chr3	148978177	148978377	+	944.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23642.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	-0.519899137210828	-0.50881896782162	-0.338527568042714	-0.515260388528565	-0.519210079552997	-0.152971977606442	0.0571214226200559	-0.51477133169993	2.4914066297494	0.338555099729539	1
Merged-chr3-105931315-4	chr3	105931226	105931426	+	807.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033780, intron 1 of 5)	intron (NM_001033780, intron 1 of 5)	1338.0	NM_001033780	433638.0	Mm.239081	NM_001033780	ENSMUSG00000074342	I830077J02Rik	-	RIKEN cDNA I830077J02 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-99563853-4	chr9	99563746	99563946	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028768, intron 1 of 21)	intron (NM_028768, intron 1 of 21)	5053.0	NM_001166138	74125.0	Mm.234823	NM_028768	ENSMUSG00000032468	Armc8	1200015K23Rik|Gid5|HSPC056	armadillo repeat containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-47038206-3	chr13	47038112	47038312	+	937.2777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016785, intron 3 of 8)	intron (NM_016785, intron 3 of 8)	5005.0	NM_016785	22017.0	Mm.10169	NM_016785	ENSMUSG00000021376	Tpmt	AW106912	thiopurine methyltransferase	protein-coding	3.23104388417338	3.85142473105591	4.20179490171951	4.21660223204015	2.58432465843992	1.96416212767665	1.58478364488698	3.35136738658391	-2.16792445403027	0.0015928807520889	0.0283832424706375
Merged-chr12-55485518-2	chr12	55485418	55485618	+	784.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	7129.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-81829552-4	chr7	81829442	81829642	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146193)	promoter-TSS (NM_146193)	-111.0	NM_146193	83962.0	Mm.439893	NM_146193	ENSMUSG00000025103	Btbd1	1190005H08Rik	BTB (POZ) domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-68668462-2	chr7	68668332	68668532	+	578.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	49976.0	NR_003648	384639.0	Mm.261760	NM_001013781		Gm5334	EG384639	tetraspanin 7 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-94795490-2	chr9	94795390	94795590	+	591.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177909, intron 4 of 15)	MTD|LTR|ERVL-MaLR	43661.0	NR_106116	102465763.0		NR_106116	ENSMUSG00000098251	Mir7656	Gm27614|mmu-mir-7656	microRNA 7656	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-40711175-1	chr3	40711075	40711275	+	590.0	f0_balb.idr	intron (NM_178386, intron 1 of 5)	L1_Mus3|LINE|L1	2304.0	NM_178386	73333.0	Mm.78691	NM_178386	ENSMUSG00000069041	Slc25a31	1700034J06Rik|Ant4|Sfec	solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 31	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-22589755-4	chr2	22589663	22589863	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32564.0	NM_008078	14417.0	Mm.4784	NM_008078	ENSMUSG00000026787	Gad2	6330404F12Rik|GAD(65)|GAD65|Gad-2	glutamic acid decarboxylase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-193128347-2	chr1	193128247	193128447	+	659.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_151719, exon 3 of 12)	non-coding (NR_151719, exon 3 of 12)	1904.0	NM_145415	215193.0	Mm.173758	NM_145415	ENSMUSG00000016181	Diexf	AA408296|AW045375|Def	digestive organ expansion factor homolog (zebrafish)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134635435-4	chr6	134635348	134635548	+	993.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2960.0	NM_026345	67729.0	Mm.57648	NM_026345	ENSMUSG00000032718	Mansc1	9130403P13Rik	MANSC domain containing 1	protein-coding	1.24974000002826	1.06461229188482	0.81385322932529	1.1773741472075	1.37930845792574	1.80957600854938	1.92355738051934	0.803732309950713	1.77400202675959	0.183284497674412	0.658116185534174
Merged-chr17-94730697-2	chr17	94730597	94730797	+	703.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_176917, intron 8 of 8)	intron (NM_176917, intron 8 of 8)	19322.0	NM_001357136	76781.0	Mm.139146	NM_176917	ENSMUSG00000055660	Mettl4	2410198H06Rik|A730091E08Rik|AV296509|HsT661	methyltransferase like 4	protein-coding	0.324437930273403	0.562965494247029	0.342345283188503	0.670715611537767	0.628195528797033	1.34176675700913	0.344248469262278	0.808972266072383	2.09568389678501	0.231830341743414	1
Merged-chr4-47353127-4	chr4	47353027	47353227	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009370)	promoter-TSS (NM_009370)	-95.0	NM_001312868	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-104901323-3	chr14	104901221	104901421	+	880.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015593, intron 3 of 5)	MTD|LTR|ERVL-MaLR	213355.0	NR_040628	100502987.0	Mm.124957	NR_040628		Gm17066	-	predicted gene 17066	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-73534992-3	chr7	73534876	73535076	+	981.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081345, intron 2 of 38)	intron (NM_001081345, intron 2 of 38)	6770.0	NM_001081345	244059.0	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114571348-4	chr11	114571240	114571440	+	967.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-97203.0	NM_023372	67671.0	Mm.238817	NM_023372	ENSMUSG00000057322	Rpl38	0610025G13Rik|Rbt|Ts|Tss	ribosomal protein L38	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-164060251-4	chr1	164060145	164060345	+	949.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT2B2|LTR|ERVL	-1831.0	NM_001164059	20343.0	Mm.1461	NM_011346	ENSMUSG00000026581	Sell	AI528707|CD62L|L-selectin|LECAM-1|Lnhr|Ly-22|Ly-m22|Lyam-1|Lyam1	selectin, lymphocyte	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-146783911-2	chr3	146783811	146784011	+	668.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_011100, intron 1 of 9)	intron (NM_011100, intron 1 of 9)	-2495.0	NM_001164200	18749.0	Mm.16766	NM_011100	ENSMUSG00000005034	Prkacb	CbPKA|Pkacb	protein kinase, cAMP dependent, catalytic, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-54992600-4	chr18	54992491	54992691	+	996.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360787)	promoter-TSS (NM_001360787)	0.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-39017880-2	chr18	39017780	39017980	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361073, intron 1 of 21)	intron (NM_001361073, intron 1 of 21)	24735.0	NM_175164	71302.0	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120043579-1	chr11	120043479	120043679	+	699.0	f1_balb.idr	intron (NM_001198785, intron 1 of 13)	intron (NM_001198785, intron 1 of 13)	-1798.0	NM_001198787	11302.0	Mm.6826	NM_007377	ENSMUSG00000025375	Aatk	AATYK|aatyk1|mKIAA0641	apoptosis-associated tyrosine kinase	protein-coding	1.14874833879804	1.80936027404397	0.786981369284264	1.54302332952631	1.16009430716285	2.70225582068169	0.792303380866686	1.02445448993772	0.878522664095927	0.496980688237386	0.936897994490085
Merged-chr7-19196792-2	chr7	19196692	19196892	+	732.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347582, intron 14 of 21)	intron (NM_001347582, intron 14 of 21)	15327.0	NR_029763	724063.0		NR_029763	ENSMUSG00000065543	Mir330	Mirn330|mir-330|mmu-mir-330	microRNA 330	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33407526-2	chr16	33407426	33407626	+	814.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358569, intron 1 of 8)	L1MB7|LINE|L1	7081.0	NM_001358569	22661.0	Mm.392667	NM_011749	ENSMUSG00000022811	Zfp148	2210405J08Rik|AI480666|AW045217|BERF-1|BFCOL1|ZBP-89|Znf148	zinc finger protein 148	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4442606-2	chr19	4442506	4442706	+	667.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045989, intron 1 of 4)	intron (NR_045989, intron 1 of 4)	3047.0	NR_045989	319314.0	Mm.393810	NR_045989	ENSMUSG00000087132	A930001C03Rik	-	RIKEN cDNA A930001C03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-59425831-4	chr2	59425781	59425981	+	848.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39199.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118677078-2	chr9	118676920	118677120	+	996.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 11 of 27)	intron (NM_133721, intron 11 of 27)	-34672.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-64726501-4	chr8	64726376	64726576	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025436, intron 2 of 5)	intron (NM_025436, intron 2 of 5)	7102.0	NM_025436	66234.0	Mm.30119	NM_025436	ENSMUSG00000031604	Msmo1	1500001G16Rik|C78600|DESP4|ERG25|Sc4mol	methylsterol monoxygenase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-58990577-3	chr6	58990485	58990685	+	896.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153574, intron 2 of 17)	intron (NM_153574, intron 2 of 17)	33917.0	NM_153574	58909.0	Mm.28813	NM_153574	ENSMUSG00000037709	Fam13a	AI462012|D430015B01Rik|FAM13A1|Precm1	family with sequence similarity 13, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6305569-2	chr19	6305469	6305669	+	912.6666869999999	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033342)	promoter-TSS (NM_001033342)	-888.0	NM_001033342	240505.0	Mm.329622	NM_001033342	ENSMUSG00000024769	Cdc42bpg	BC046418|MRCKgamma	CDC42 binding protein kinase gamma (DMPK-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-101761874-4	chr13	101761789	101761989	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077495, intron 1 of 15)	intron (NM_001077495, intron 1 of 15)	6328.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5220629-4	chr17	5220495	5220695	+	995.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 4 of 19)	intron (NM_001085355, intron 4 of 19)	198172.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-30586904-2	chr14	30586804	30587004	+	597.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14755.0	NR_037237	100526475.0		NR_037237	ENSMUSG00000093156	Mir3076	mir-3076|mmu-mir-3076	microRNA 3076	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133210030-2	chr4	133209926	133210126	+	817.833374	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008154, exon 2 of 2)	3' UTR (NM_008154, exon 2 of 2)	2510.0	NM_008154	14748.0	Mm.4721	NM_008154	ENSMUSG00000049649	Gpr3	Gpcr20|Gpcr21|Gpcr3	G-protein coupled receptor 3	protein-coding	-0.208283783115327	-0.190719793063729	-0.196438776803222	0.56960718211407	-0.207177803637276	-0.189435193761239	-0.195174548196752	0.578527616610749	0.0282038014051437	0.990994131209618	1
Merged-chr13-28601846-4	chr13	28601711	28601911	+	824.162476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045054, intron 6 of 7)	ORR1F|LTR|ERVL-MaLR	109062.0	NR_105787	102466635.0		NR_105787	ENSMUSG00000099158	Mir6368	Gm27800|mmu-mir-6368	microRNA 6368	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-78228385-3	chr10	78228284	78228484	+	752.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081055, intron 3 of 22)	intron (NM_001081055, intron 3 of 22)	16258.0	NM_001081055	216131.0	Mm.27539	NM_001081055	ENSMUSG00000000374	Trappc10	B230307C21Rik|Gm870|Tmem1|b2b2416Clo|b2b2613Clo	trafficking protein particle complex 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-27192444-4	chr3	27192344	27192544	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 1 of 4)	intron (NM_178772, intron 1 of 4)	9440.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-130816114-4	chr4	130816015	130816215	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011520, intron 1 of 4)	intron (NM_011520, intron 1 of 4)	23578.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-45154639-3	chr19	45154525	45154725	+	699.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021901, intron 2 of 2)	intron (NM_021901, intron 2 of 2)	3910.0	NM_021901	21908.0	Mm.391203	NM_021901	ENSMUSG00000025215	Tlx1	Hox-11|Hox11|Tlx-1	T cell leukemia, homeobox 1	protein-coding	0.43043590075649	0.303606813655982	1.07902701367632	0.290796128993265	0.565317902360213	0.819634518024077	0.640771544915046	0.291774129130262	0.0626562231794324	0.972111478343754	1
Merged-chr18-56465118-2	chr18	56465018	56465218	+	733.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_026240, intron 1 of 13)	intron (NM_026240, intron 1 of 13)	32986.0	NM_026240	107022.0	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|Gramd2b|NS3TP2	GRAM domain containing 3	protein-coding	-1.29633872064033	-1.26720680975202	-1.27768629845203	-1.28629446248818	-0.70879630402184	-1.2649358608345	-1.2753139719142	-1.28475360524138	2.50884260628271	0.468217847016783	1
Merged-chr1-85245692-1	chr1	85245592	85245792	+	675.333313	f1_balb.idr	TTS (NM_001037909)	TTS (NM_001037909)	24874.0	NM_175219	620078.0	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik	RIKEN cDNA C130026I21 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-153401956-4	chr1	153401863	153402063	+	911.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12270.0	NR_033736	626058.0	Mm.31556	NM_001177359		E330020D12Rik	EG626058|F430003O07Rik|Gm6648	Riken cDNA E330020D12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-28911250-4	chr16	28911156	28911356	+	916.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177718, intron 1 of 1)	intron (NM_177718, intron 1 of 1)	18442.0	NM_177718	239796.0	Mm.155887	NM_177718	ENSMUSG00000051065	Mb21d2	1600021P15Rik|A430031N04|C87006	Mab-21 domain containing 2	protein-coding	2.18512087120759	2.01323120334566	2.37285826556321	1.75788036399826	2.20348462690021	1.50282480290222	1.22813208679016	2.02201919782705	-0.787548012608346	0.439783918358053	0.909249686890578
Merged-chr3-9004554-4	chr3	9004386	9004586	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357072)	promoter-TSS (NM_001357072)	237.0	NM_009412	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-21064694-3	chr19	21064596	21064796	+	856.25	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40014.0	NR_126458	75354.0	Mm.243873	NR_126458		4930554I06Rik	-	RIKEN cDNA 4930554I06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-54985801-4	chr12	54985708	54985908	+	986.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013815, intron 1 of 26)	CpG-3178	528.0	NM_013815	217578.0	Mm.479583	NM_013815	ENSMUSG00000035021	Baz1a	Acf1|B930060C03|BC065123|Gtl5|Wcrf180|cbp146	bromodomain adjacent to zinc finger domain 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6392815-2	chr19	6392715	6392915	+	543.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011224, intron 15 of 19)	intron (NM_011224, intron 15 of 19)	-7768.0	NM_011242	19395.0	Mm.77017	NM_011242	ENSMUSG00000032946	Rasgrp2	CDC25L|Caldaggef1	RAS, guanyl releasing protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-65794999-3	chr11	65794897	65795097	+	771.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB8|LINE|L1	-6638.0	NM_001316367	26398.0	Mm.412922	NM_009157	ENSMUSG00000033352	Map2k4	JNKK1|MEK4|MKK4|PRKMK4|Sek1|Serk1	mitogen-activated protein kinase kinase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-135719663-3	chr1	135719560	135719760	+	905.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360782)	promoter-TSS (NM_001360782)	-403.0	NM_001360782	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-45560206-2	chr17	45560106	45560306	+	713.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001304956, exon 4 of 6)	exon (NM_001304956, exon 4 of 6)	-3730.0	NM_001357105	73836.0	Mm.289716	NM_028662	ENSMUSG00000037089	Slc35b2	1110003M08Rik|AA407792|AI842275|PAPST1|Slc35b1	solute carrier family 35, member B2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-36928555-2	chr19	36928455	36928655	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080706, intron 1 of 37)	intron (NM_001080706, intron 1 of 37)	2476.0	NM_001080706	107182.0	Mm.295062	NM_001080706	ENSMUSG00000040565	Btaf1	AI414500|AI447930|E430027O22Rik|TAF170	B-TFIID TATA-box binding protein associated factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70723719-2	chr8	70723619	70723819	+	672.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310465)	promoter-TSS (NM_001310465)	-345.0	NM_001310465	110385.0	Mm.255180	NM_201607	ENSMUSG00000031842	Pde4c	Dpde1|E130301F19Rik|dunce	phosphodiesterase 4C, cAMP specific	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-48838603-4	chr11	48838481	48838681	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347446, intron 1 of 6)	intron (NM_001347446, intron 1 of 6)	1110.0	NM_001347446	94089.0	Mm.390335	NM_053166	ENSMUSG00000040350	Trim7	AI790312	tripartite motif-containing 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-100422687-3	chr12	100422574	100422774	+	944.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033213, intron 5 of 19)	intron (NM_001033213, intron 5 of 19)	98148.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-38418872-4	chr18	38418798	38418998	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022996)	promoter-TSS (NM_022996)	-9.0	NM_022996	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-121703326-2	chr9	121703226	121703426	+	688.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_178677, intron 1 of 7)	intron (NM_178677, intron 1 of 7)	1703.0	NM_178677	215474.0	Mm.31421	NM_178677	ENSMUSG00000061536	Sec22c	4932412K21|5930407I15Rik|C530046H07|Sec22l3	SEC22 homolog C, vesicle trafficking protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-69861591-4	chr2	69861501	69861701	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355265)	promoter-TSS (NM_001355265)	39.0	NM_009278	20823.0	Mm.10508	NM_009278	ENSMUSG00000068882	Ssb	SS-B	Sjogren syndrome antigen B	protein-coding	4.60103318545491	4.04725016067978	3.98420769682426	4.59885570610806	4.6346552679606	2.96147910769195	3.78378231740183	4.838079373956	-0.115295523521249	0.814553423165523	0.998431161219273
Merged-chr7-128611202-4	chr7	128611114	128611314	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178641)	promoter-TSS (NM_178641)	-151.0	NM_178641	101490.0	Mm.490344	NM_178641	ENSMUSG00000042105	Inpp5f	5830435P03Rik|AI115354|AW561896|SAC2|cI-27|hSAC2|mKIAA0966	inositol polyphosphate-5-phosphatase F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6046963-4	chr19	6046850	6047050	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164709)	promoter-TSS (NM_001164709)	-195.0	NM_001164709	74126.0	Mm.149870	NM_028769	ENSMUSG00000024807	Syvn1	1200010C09Rik|AW211966|C85322|D530017H19Rik|Hrd1	synovial apoptosis inhibitor 1, synoviolin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76091712-4	chr15	76091597	76091797	+	964.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358359)	promoter-TSS (NM_001358359)	-7.0	NM_001358359	223649.0	Mm.101946	NM_144847	ENSMUSG00000075590	Nrbp2	BC011468	nuclear receptor binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101732078-2	chr11	101731978	101732178	+	598.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144831)	promoter-TSS (NM_144831)	-878.0	NM_144831	217207.0	Mm.28186	NM_144831	ENSMUSG00000034931	Dhx8	Ddx8|mDEAH6|mKIAA4096	DEAH (Asp-Glu-Ala-His) box polypeptide 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-86317798-1	chr3	86317698	86317898	+	572.5	f0_balb.idr	intron (NM_001077687, intron 14 of 50)	intron (NM_001077687, intron 14 of 50)	93108.0	NM_001077688	80877.0	Mm.439825	NM_030695	ENSMUSG00000028080	Lrba	C80285|D3Ertd775e|Lab300|Lba	LPS-responsive beige-like anchor	protein-coding	0.73910459645884	1.10557041160358	0.55303386758899	0.368936398905691	0.509189465922881	0.745805118420392	0.710796515126908	0.369913261720977	-0.80197027608103	0.630571290663932	1
Merged-chr5-149690532-1	chr5	149690432	149690632	+	801.0	f0_balb.idr	intron (NM_001081204, intron 1 of 14)	intron (NM_001081204, intron 1 of 14)	12275.0	NM_001081204	381694.0	Mm.45060	NM_001081204	ENSMUSG00000051950	B3glct	B3galtl|Gm1057	beta-3-glucosyltransferase	protein-coding	1.84887006464061	1.92366010241802	2.14007606794385	1.20509353571367	2.19135929675665	2.56969927832061	2.72989589299425	1.44985244997132	1.24357033764732	0.211965969478934	0.701112213327031
Merged-chr8-85013428-4	chr8	85013329	85013529	+	955.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_052011, exon 2 of 10)	non-coding (NR_052011, exon 2 of 10)	979.0	NM_001130194	212989.0	Mm.215154	NM_001130194	ENSMUSG00000052819	Best2	Vmd2l1	bestrophin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-35171562-2	chr7	35171462	35171662	+	883.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14823.0	NM_017394	53896.0	Mm.35567	NM_017394	ENSMUSG00000030495	Slc7a10	AL024237|Asc-1|D7Bwg0847e	solute carrier family 7 (cationic amino acid transporter, y+ system), member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101311369-5	chr7	101311342	101311542	+	945.1333619999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5644.0	NM_001360460	56018.0	Mm.28896	NM_019990	ENSMUSG00000030688	Stard10	AV048538|CGI-52|NY-C0-28|PC-TP2|PCTP2|Pctpl|Sdccag28|SdccagG28|TISP-81	START domain containing 10	protein-coding	1.63078970302105	1.44286947921794	1.76644552053164	1.97908313758097	1.64398248380671	2.62884274724808	2.36926700884601	1.37418031807262	1.04983691257314	0.301212056304671	0.802503830838662
Merged-chr17-34313576-4	chr17	34313452	34313652	+	994.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010382, intron 2 of 5)	intron (NM_010382, intron 2 of 5)	7685.0	NM_010382	14969.0	Mm.22564	NM_010382	ENSMUSG00000060586	H2-Eb1	Eb|H-2Eb|H2Eb|Ia-4|Ia4	histocompatibility 2, class II antigen E beta	protein-coding	3.62736091646589	3.67559163367355	2.36173554138484	3.3894286122967	3.17207550928957	3.55144271268655	3.17449622855375	1.88285699005394	-0.46363371108748	0.500542826294327	0.938068233345726
Merged-chr5-122775936-2	chr5	122775836	122776036	+	566.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199676, intron 1 of 16)	intron (NM_001199676, intron 1 of 16)	3474.0	NM_001199676	207565.0	Mm.289237	NM_145358	ENSMUSG00000029471	Camkk2	6330570N16Rik|AW061083|mKIAA0787	calcium/calmodulin-dependent protein kinase kinase 2, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-40497179-1	chr8	40497079	40497279	+	584.0	f0_balb.idr	intron (NR_155265, intron 5 of 6)	intron (NR_155265, intron 5 of 6)	13300.0	NM_001361938	18983.0	Mm.272551	NM_011135	ENSMUSG00000031601	Cnot7	AU022737|CAF-1|Caf1|Pop2	CCR4-NOT transcription complex, subunit 7	protein-coding	0.391945833128461	0.24490001667704	0.235076406009206	0.227383533363946	0.680697339382796	1.48426069706188	0.237257067647642	0.744753037412993	3.76475867685949	0.042622058703231	1
Merged-chr19-45804603-1	chr19	45804503	45804703	+	650.0	f1_balb.idr	intron (NM_145703, intron 1 of 9)	intron (NM_145703, intron 1 of 9)	7688.0	NM_001276358	80906.0	Mm.213204	NM_030716	ENSMUSG00000025221	Kcnip2	KChIP2	Kv channel-interacting protein 2	protein-coding	-0.815974056072391	-0.805484571697829	-0.808916535628161	-0.81156746245143	-0.059810788200218	-0.597275837192005	-0.808159209927297	-0.811104158808676	3.26607867210986	0.261256506121285	1
Merged-chr3-138118929-3	chr3	138118825	138119025	+	900.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr	intron (NM_001355052, intron 7 of 21)	intron (NM_001355052, intron 7 of 21)	12728.0	NM_008642	17777.0	Mm.2941	NM_008642	ENSMUSG00000028158	Mttp	1810043K16Rik|MTP	microsomal triglyceride transfer protein	protein-coding	4.29120776258401	5.05938285601674	4.14450722794355	2.11539961423463	4.36844783288459	5.16284646014063	4.61573420374427	4.6970972507253	0.627936195143912	0.237213498663943	0.733808141787246
Merged-chr15-6406972-2	chr15	6406872	6407072	+	626.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037905, intron 1 of 13)	intron (NM_001037905, intron 1 of 13)	20224.0	NM_001310446	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-147476172-6	chr6	147476075	147476275	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355713)	promoter-TSS (NM_001355713)	-190.0	NM_001355713	67015.0	Mm.209774	NM_025911	ENSMUSG00000030301	Ccdc91	1700086G08Rik|1810060J02Rik|AU045683|AW555238|p56	coiled-coil domain containing 91	protein-coding	-0.826079301973014	-0.815976911389005	-0.48856768288447	-0.822034307155513	-0.825477939972824	-0.813140593568297	-0.233450949098413	-0.821608315586778	1.01638391311071	0.737217197678661	1
Merged-chr8-26699718-2	chr8	26699618	26699818	+	745.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	124705.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	1.66714385540441	0.70469056215872	0.683033408758564	2.53769858271437	1.05701439373837	0.709454392611278	0.687886244142451	1.69186848501153	-1.588079992988	0.281285767627365	0.78400185225177
Merged-chr5-99341458-4	chr5	99341320	99341520	+	731.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 3 of 3)	RMER17C|LTR|ERVK	-88493.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-74515536-2	chr15	74515436	74515636	+	624.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_174991)	promoter-TSS (NM_174991)	-660.0	NM_174991	107831.0	Mm.43133	NM_174991	ENSMUSG00000034730	Adgrb1	B830018M07Rik|Bai1|R75078|mKIAA4089	adhesion G protein-coupled receptor B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-152325770-4	chr4	152325673	152325873	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_102292)	promoter-TSS (NR_102292)	47.0	NR_102291	19934.0	Mm.307846	NM_009079	ENSMUSG00000028936	Rpl22	2700038K18Rik	ribosomal protein L22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-17516406-2	chr17	17516306	17516506	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	108083.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24639029-2	chr17	24638929	24639129	+	715.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_023449)	TTS (NM_023449)	5928.0	NM_023449	65962.0	Mm.21587	NM_023055	ENSMUSG00000002504	Slc9a3r2	0610011L07Rik|1200011K07Rik|2010007A20Rik|E3karp|NHERF-2|Nherf2|Octs2|Sip-1|Sip1|Sryip1|Tka-1	solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2	protein-coding	0.335815473434559	2.08810231072106	0.38191180441548	0.365151708338949	0.793018578514555	2.10929109437164	0.386588263443307	0.368126215398063	0.205339300519341	0.949960392533842	0.998431161219273
Merged-chr9-44511282-2	chr9	44511182	44511382	+	727.166626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_007551)	TTS (NM_007551)	12146.0	NM_030256	80288.0	Mm.370270	NM_030256	ENSMUSG00000063382	Bcl9l	B9L|BC003321|BCL9-2|DLNB11	B cell CLL/lymphoma 9-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-73146943-4	chr14	73146872	73147072	+	888.216675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033185, intron 1 of 15)	RMER6A|LTR|ERVK	4187.0	NR_033185	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64102770-3	chr5	64102664	64102864	+	941.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025700, intron 3 of 13)	ID|SINE|ID	9825.0	NM_001356964	66681.0	Mm.2325	NM_025700	ENSMUSG00000029171	Pgm1	3230402E02Rik|Pgm-1|Pgm2	phosphoglucomutase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46481744-2	chr19	46481644	46481844	+	800.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025391, intron 10 of 11)	intron (NM_001025391, intron 10 of 11)	-19904.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97829330-5	chr6	97829271	97829471	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113198, intron 1 of 9)	intron (NM_001113198, intron 1 of 9)	22313.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	5.01806007982705	4.8429685383926	5.28767778383503	5.00279706737204	4.74266205456666	5.38200068657924	4.4099009345529	4.27720380899103	-0.340035250753076	0.340071291007363	0.840830533493442
Merged-chr3-37418409-2	chr3	37418309	37418509	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153561, intron 1 of 4)	intron (NM_153561, intron 1 of 4)	1187.0	NM_001291044	229228.0	Mm.436967	NM_153561	ENSMUSG00000050174	Nudt6	Asfgf2b	nudix (nucleoside diphosphate linked moiety X)-type motif 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53048792-2	chr4	53048692	53048892	+	869.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 37 of 49)	intron (NM_013454, intron 37 of 49)	36912.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69109273-2	chr11	69109173	69109373	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_011065, exon 23 of 23)	exon (NM_011065, exon 23 of 23)	9121.0	NM_001159367	18626.0	Mm.7373	NM_011065	ENSMUSG00000020893	Per1	Hftm|Per|m-rigui|mPer1	period circadian clock 1	protein-coding	-0.409094344149525	-0.395788265409741	-0.217935391225164	-0.403506362836079	-0.128726660710552	-0.394807054737391	0.391635590745449	-0.402918708835034	2.76480944096699	0.265166257280058	1
Merged-chr1-171631675-4	chr1	171631555	171631755	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_144539)	TTS (NM_144539)	10245.0	NR_106151	102465784.0		NR_106151	ENSMUSG00000098316	Mir7683	Gm27950|mmu-mir-7683	microRNA 7683	ncRNA	5.65091313325637	5.9151324232528	4.95168357801054	5.30862645656151	5.41780686273779	5.18521467479848	5.81295237410073	5.5227539373803	0.00320560785568372	0.991386360321456	0.998431161219273
Merged-chr1-144004245-4	chr1	144004151	144004351	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009061)	promoter-TSS (NM_009061)	-102.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-69247518-4	chr10	69247427	69247627	+	895.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252638, intron 2 of 11)	intron (NM_001252638, intron 2 of 11)	34333.0	NM_001252638	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-16494970-2	chr11	16494870	16495070	+	740.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13514.0	NM_011343	20335.0	Mm.325350	NM_011343	ENSMUSG00000078974	Sec61g	-	SEC61, gamma subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-75683095-4	chr2	75682980	75683180	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010902, intron 1 of 4)	intron (NM_010902, intron 1 of 4)	21583.0	NR_132727	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55106595-4	chr14	55106464	55106664	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001303502)	promoter-TSS (NM_001303502)	29.0	NM_001303502	11766.0	Mm.238879	NM_007455	ENSMUSG00000040701	Ap1g2	Adtg2|G2ad	adaptor protein complex AP-1, gamma 2 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-105674578-3	chr2	105674493	105674693	+	750.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001244198, intron 1 of 12)	intron (NM_001244198, intron 1 of 12)	-1151.0	NM_001244200	18508.0	Mm.3608	NM_013627	ENSMUSG00000027168	Pax6	1500038E17Rik|AEY11|Dey|Gsfaey11|Pax-6|Sey	paired box 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-158410456-3	chr2	158410363	158410563	+	887.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291137, intron 1 of 30)	CpG	610.0	NM_001291138	228850.0	Mm.398185	NM_177227	ENSMUSG00000027652	Ralgapb	AI507211|B230339M05Rik|p170	Ral GTPase activating protein, beta subunit (non-catalytic)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-97573271-4	chr13	97573185	97573385	+	890.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_046157, intron 2 of 2)	intron (NR_046157, intron 2 of 2)	13285.0	NR_046157	328314.0	Mm.138047	NR_046157	ENSMUSG00000110235	Gm5086	B230311A21|EG328314	predicted gene 5086	ncRNA	1.85192889265839	1.92175745932086	2.2385613195218	1.94724913487171	2.4129065866926	2.33429206237846	2.0171472000958	1.25461671604872	0.238722491935747	0.807601969210925	0.998431161219273
Merged-chr16-44762071-4	chr16	44761942	44762142	+	881.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3694.0	NM_021325	57781.0	Mm.416152	NM_021325	ENSMUSG00000022667	Cd200r1	CD200R|Mox2r|OX2R	CD200 receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-124755446-4	chr2	124755348	124755548	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	101867.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-119366645-2	chr13	119366545	119366745	+	672.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001308506, intron 11 of 16)	L1MEb|LINE|L1	42366.0	NM_008710	18115.0	Mm.132584	NM_008710	ENSMUSG00000116207	Nnt	4930423F13Rik|AI323702|BB168308	nicotinamide nucleotide transhydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-172397538-6	chr2	172397341	172397541	+	741.972229	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080820, intron 1 of 6)	L1_Mus2|LINE|L1	3647.0	NM_001276423	320664.0	Mm.210195	NM_001033538	ENSMUSG00000074570	Cass4	F730031O20Rik	Cas scaffolding protein family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3901470-2	chr12	3901370	3901570	+	711.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153743, intron 11 of 17)	intron (NM_153743, intron 11 of 17)	9726.0	NM_153743	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134045172-4	chr6	134045095	134045295	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007961, intron 1 of 7)	intron (NM_007961, intron 1 of 7)	9495.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	1.65480682241037	0.865906505499741	1.10592826878474	0.424645541140075	0.411881774665377	0.875006367523465	0.436031924092666	0.426204849523697	-3.00351641723042	0.094472210271308	0.475584998112652
Merged-chr6-83636586-4	chr6	83636493	83636693	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19523.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-65873287-4	chr3	65873165	65873365	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	84984.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	2.84921685948465	3.10605686506911	2.4041633790113	2.33344981163059	2.69536168659678	3.3078715978412	1.83370131406527	3.65880958139787	0.606397533752843	0.423121880084968	0.900322118218157
Merged-chr5-135961971-2	chr5	135961871	135962071	+	875.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001160366, intron 9 of 10)	intron (NM_001160366, intron 9 of 10)	12505.0	NM_001160366	109267.0	Mm.332750	NM_001160366	ENSMUSG00000029699	Ssc4d	C330016E03Rik|S4D-SRCRB|SRCRB-S4D|Srcrb4d	scavenger receptor cysteine rich family, 4 domains	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141361598-2	chr7	141361498	141361698	+	809.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_133191, exon 19 of 21)	exon (NM_133191, exon 19 of 21)	3512.0	NR_033532	320871.0	Mm.475463	NM_177280	ENSMUSG00000086844	B230206H07Rik	-	RIKEN cDNA B230206H07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-34146740-4	chr8	34146658	34146858	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026609)	promoter-TSS (NM_026609)	-19.0	NM_026609	68192.0	Mm.34212	NM_026609	ENSMUSG00000031513	Leprotl1	1110067H13Rik|1520402O14Rik|AI854296	leptin receptor overlapping transcript-like 1	protein-coding	1.98610938168634	2.26544296548869	3.24912451508099	1.29470576699914	1.8883655340114	1.09704555116683	1.92806814201707	1.03413545239594	-2.01710348626771	0.0674457449805481	0.389920036111444
Merged-chr1-191312796-4	chr1	191312716	191312916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025424, intron 1 of 3)	intron (NM_025424, intron 1 of 3)	5302.0	NM_025424	66208.0	Mm.46444	NM_025424	ENSMUSG00000037499	Nenf	1110060M21Rik|SCIRP10|Spuf	neuron derived neurotrophic factor	protein-coding	4.48078478617803	4.93257802819604	4.74037419478449	4.48164330291477	4.2973676965741	4.09586555436481	5.65830260055854	4.40358485465676	0.129422081407542	0.760518176551505	0.998431161219273
Merged-chr6-39523065-2	chr6	39522965	39523165	+	749.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_172477, exon 2 of 19)	exon (NM_172477, exon 2 of 19)	34769.0	NM_172477	209773.0	Mm.440021	NM_172477	ENSMUSG00000038456	Dennd2a	B930096L08Rik|C130031G22|mKIAA1277	DENN/MADD domain containing 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124768690-4	chr6	124768573	124768773	+	757.799988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013509, intron 1 of 11)	intron (NM_013509, intron 1 of 11)	1000.0	NM_001302642	13807.0	Mm.3913	NM_013509	ENSMUSG00000004267	Eno2	AI837106|D6Ertd375e|Eno-2|NSE	enolase 2, gamma neuronal	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-45642950-2	chr17	45642863	45643063	+	992.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013767, intron 4 of 21)	intron (NM_001013767, intron 4 of 21)	16346.0	NM_001013767	268958.0	Mm.426026	NM_001013767	ENSMUSG00000058626	Capn11	-	calpain 11	protein-coding	2.90011452768951	3.5496511267011	2.92058991246103	3.75146916911625	3.59811365724567	3.94244595382345	2.94427438817105	3.35460508871541	0.274632213037963	0.636328256057042	0.982417279970648
Merged-chr17-67474142-4	chr17	67474052	67474252	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-119661.0	NM_001357625	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167377319-2	chr2	167377219	167377419	+	979.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28141.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-86356702-4	chr11	86356602	86356802	+	914.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080931, intron 1 of 29)	intron (NM_001080931, intron 1 of 29)	823.0	NM_001080931	327987.0	Mm.341886	NM_001080931	ENSMUSG00000034297	Med13	1110067M05Rik|D030023K18|Thrap1|Trap240	mediator complex subunit 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-30649227-4	chr11	30649132	30649332	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029344, intron 1 of 3)	CpG	164.0	NM_029344	75572.0	Mm.390319	NM_029344	ENSMUSG00000060923	Acyp2	2310004B09Rik	acylphosphatase 2, muscle type	protein-coding	4.70814143761917	4.03549131399941	4.1671960264032	4.36887815228229	4.14743134618063	4.45027488432917	4.00393496539298	3.1636623474961	-0.45057247126957	0.32051616225831	0.822871522419802
Merged-chr16-18811721-4	chr16	18811614	18811814	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028403)	promoter-TSS (NR_028403)	258.0	NM_001161623	12544.0	Mm.1248	NM_009862	ENSMUSG00000000028	Cdc45	Cdc45l	cell division cycle 45	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-12894881-2	chr13	12894781	12894981	+	951.1666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-94802.0	NM_011118	18812.0	Mm.457984	NM_011118	ENSMUSG00000056457	Prl2c3	Ghd1|MRP-2|MRP-3|Mrpplf3|PLF-2|PLF-3|Plf2|Prl2c4|mrp/plf3	prolactin family 2, subfamily c, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141719568-2	chr4	141719556	141719756	+	893.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001017966, intron 1 of 9)	intron (NM_001017966, intron 1 of 9)	3763.0	NM_001017966	68817.0	Mm.393721	NM_001017966	ENSMUSG00000078515	Ddi2	1110056G13Rik|1700027M01Rik|9130022E05Rik|AI604911|AU040698	DNA-damage inducible protein 2	protein-coding	0.720586885912555	0.96878206695226	0.466996558647038	0.997775653094722	0.839312708066072	0.47636521020311	1.04977806894812	0.462119665316506	-0.388383795096452	0.817321801221857	1
Merged-chr1-180811827-4	chr1	180811723	180811923	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008210, exon 2 of 4)	exon (NM_008210, exon 2 of 4)	1782.0	NM_008210	15078.0	Mm.138832	NM_008210	ENSMUSG00000060743	H3f3a	EyeLinc14|H3.3A	H3 histone, family 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-66864660-2	chr1	66864560	66864760	+	600.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1351.0	NM_007381	11363.0	Mm.2445	NM_007381	ENSMUSG00000026003	Acadl	AA960361|AU018452|C79855|LCAD	acyl-Coenzyme A dehydrogenase, long-chain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41342314-2	chr19	41342214	41342414	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 2 of 16)	intron (NM_031376, intron 2 of 16)	42756.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-88460476-1	chr17	88460376	88460576	+	594.0	f1_c57bl6.idr	intron (NM_001355742, intron 1 of 5)	intron (NM_001355742, intron 1 of 5)	19772.0	NM_001355742	14236.0	Mm.112824	NM_180974	ENSMUSG00000034998	Foxn2	3230402J05Rik|6030465J18Rik|Fkh19|Foxn1|HTLF	forkhead box N2	protein-coding	1.13058689115368	0.508137833800113	0.678344265070446	0.800615537513003	0.633458970289025	1.01216618710792	0.502029181281603	1.03822814813249	0.0733214358954005	0.96323269314407	1
Merged-chr14-103065787-4	chr14	103065679	103065879	+	897.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4437.0	NM_001033242	211286.0	Mm.295289	NM_001033242	ENSMUSG00000022125	Cln5	A730075N08Rik	ceroid-lipofuscinosis, neuronal 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-153917372-4	chr3	153917272	153917472	+	915.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR9A3|LTR|ERVK	-4406.0	NR_028094	19352.0	Mm.277831	NM_011231	ENSMUSG00000038975	Rabggtb	-	Rab geranylgeranyl transferase, b subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120539530-4	chr8	120539432	120539632	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_106159)	TTS (NR_106159)	836.0	NR_106159	102466849.0		NR_106159	ENSMUSG00000098280	Mir7687	Gm27573|mmu-mir-7687	microRNA 7687	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-25319172-2	chr2	25319072	25319272	+	780.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008169)	promoter-TSS (NM_008169)	15.0	NM_008169	14810.0	Mm.278672	NM_008169	ENSMUSG00000026959	Grin1	GluN1|GluRdelta1|GluRzeta1|M100174|NMD-R1|NMDAR1|NR1|Nmdar|Rgsc174	glutamate receptor, ionotropic, NMDA1 (zeta 1)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-24990251-4	chr15	24990163	24990363	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	423501.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-35803017-2	chr16	35802918	35803118	+	587.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_152314, intron 3 of 8)	RMER17A2|LTR|ERVK	32632.0	NM_175111	66667.0	Mm.45272	NM_175111	ENSMUSG00000022849	Hspbap1	3830421G21Rik	Hspb associated protein 1	protein-coding	0.731360553389537	0.262182431516821	1.12560738504904	0.249592183174241	0.525667174080906	0.467824663125692	0.256654824903104	0.424119681883126	-1.45000699360596	0.426770615669701	1
Merged-chr7-128313305-2	chr7	128313205	128313405	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-15174.0	NM_145590	233913.0	Mm.220880	NM_145590	ENSMUSG00000030780	BC017158	-	cDNA sequence BC017158	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180736759-4	chr1	180736652	180736852	+	787.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_133225, exon 4 of 8)	exon (NM_133225, exon 4 of 8)	10709.0	NM_133225	170760.0	Mm.272981	NM_133225	ENSMUSG00000026499	Acbd3	60kDa|8430407O11Rik|D1Ertd10e|GCP60|GOLPH1|Gocap1|Pap7	acyl-Coenzyme A binding domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-140171804-2	chr1	140171704	140171904	+	833.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_009888, intron 1 of 21)	intron (NM_009888, intron 1 of 21)	11607.0	NM_009888	12628.0	Mm.8655	NM_009888	ENSMUSG00000026365	Cfh	Mud-1|NOM|Sas-1|Sas1	complement component factor h	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-109776287-4	chr13	109776161	109776361	+	991.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011056, intron 7 of 16)	intron (NM_011056, intron 7 of 16)	-127548.0	NR_035442	100316683.0		NR_035442	ENSMUSG00000084651	Mir1904	Mirn1904|mmu-mir-1904	microRNA 1904	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-35693215-4	chr3	35693109	35693309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-27046.0	NR_040748	625963.0	Mm.251506	NR_040748	ENSMUSG00000105662	Gm6639	-	predicted gene 6639	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-61143505-4	chr10	61143430	61143630	+	978.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009163, intron 2 of 14)	intron (NM_009163, intron 2 of 14)	4154.0	NM_009163	20397.0	Mm.412319	NM_009163	ENSMUSG00000020097	Sgpl1	AI428538|D10Xrf456|S1PL|Spl	sphingosine phosphate lyase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6258841-2	chr19	6258741	6258941	+	796.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_194348, intron 36 of 39)	intron (NM_194348, intron 36 of 39)	-5802.0	NR_029830	723957.0		NR_029830	ENSMUSG00000065582	Mir194-2	Mirn194-2|mir-194-2	microRNA 194-2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-82716906-2	chr18	82716806	82717006	+	960.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-3375.0	NR_039572	100628586.0		NR_039572	ENSMUSG00000092638	Mir5112	mmu-mir-5112|mu-mir-5112	microRNA 5112	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-29502234-2	chr19	29502134	29502334	+	635.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19753.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-98773887-3	chr12	98773785	98773985	+	959.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160108, intron 1 of 6)	intron (NM_001160108, intron 1 of 6)	2863.0	NM_001160108	75553.0	Mm.25549	NM_029334	ENSMUSG00000021012	Zc3h14	1010001P15Rik|1700016A15Rik|2700069A02Rik|AU014748	zinc finger CCCH type containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-76028303-2	chr11	76028203	76028403	+	863.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029658)	promoter-TSS (NM_029658)	-521.0	NM_029658	76566.0	Mm.34131	NM_029658	ENSMUSG00000020846	Rflnb	1500005K14Rik|Fam101b|RefilinB|cfm	refilin B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-45758236-3	chr2	45758126	45758326	+	730.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61621.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36067212-2	chr1	36067112	36067312	+	962.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1188.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128687375-4	chr2	128687268	128687468	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008569)	promoter-TSS (NM_008569)	27.0	NM_008569	17222.0	Mm.277408	NM_008569	ENSMUSG00000014355	Anapc1	2610021O03Rik|AI047775|AI853536|AW547281|Apc1|Mcpr|tsg24	anaphase promoting complex subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-100095914-3	chr4	100095829	100096029	+	815.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001312690, exon 1 of 4)	5' UTR (NM_001312690, exon 1 of 4)	138.0	NM_001312690	26563.0	Mm.57252	NM_013845	ENSMUSG00000035305	Ror1	2810404D04Rik|Ntrkr1	receptor tyrosine kinase-like orphan receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111810010-4	chr12	111809910	111810110	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028875, intron 3 of 7)	intron (NM_028875, intron 3 of 7)	3869.0	NM_028875	74335.0	Mm.19082	NM_028875	ENSMUSG00000021287	Xrcc3	-	X-ray repair complementing defective repair in Chinese hamster cells 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-120014669-2	chr9	120014569	120014769	+	593.833374	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011724, exon 3 of 3)	3' UTR (NM_011724, exon 3 of 3)	8929.0	NM_011724	22437.0	Mm.10117	NM_011724	ENSMUSG00000079243	Xirp1	AI415219|Cmya1	xin actin-binding repeat containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-63474708-2	chr4	63474608	63474808	+	734.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001008791, intron 1 of 12)	intron (NM_001008791, intron 1 of 12)	21283.0	NM_001008793	73750.0	Mm.300397	NM_028640	ENSMUSG00000039137	Whrn	1110035G07Rik|AW122018|AW742671|C430046P22Rik|Dfnb31|Ush2d|wi	whirlin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132008385-4	chr4	132008277	132008477	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183428, intron 1 of 20)	intron (NM_183428, intron 1 of 20)	40701.0	NM_001128606	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-75699308-3	chr3	75699206	75699406	+	734.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43575.0	NR_040539	69193.0	Mm.374088	NR_040539	ENSMUSG00000099370	Platr10	2410007B07Rik	pluripotency associated transcript 10	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-32529146-2	chr6	32529046	32529246	+	852.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_175750, intron 1 of 31)	intron (NM_175750, intron 1 of 31)	18005.0	NR_040277	319849.0	Mm.440860	NR_040277	ENSMUSG00000086763	Plxna4os1	B230378P21Rik	plexin A4, opposite strand 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-79528849-5	chr11	79528740	79528940	+	886.4400019999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033711, intron 1 of 1)	intron (NM_001033711, intron 1 of 1)	1769.0	NM_146023	101488212.0	Mm.439665	NM_146023	ENSMUSG00000070354	Evi2	Evi2a-evi2b|Gm21975	ecotropic viral integration site 2	protein-coding	0.572624471287825	1.41891993153451	0.971978822795239	0.587853063432888	1.02060119175628	0.610985024042373	1.5648341801775	0.945761153680814	0.615545646740242	0.693640322804741	0.997536945022547
Merged-chr8-95437614-2	chr8	95437514	95437714	+	629.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2745.0	NM_008187	14894.0	Mm.2080	NM_008187	ENSMUSG00000031796	Cfap20	2600014O15Rik|AL024127|Gtl3|T10-2A2	cilia and flagella associated protein 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89237147-2	chr3	89237047	89237247	+	635.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_121683, intron 9 of 10)	B1_Mus2|SINE|Alu	7866.0	NR_121683	360213.0	Mm.331156	NM_183037	ENSMUSG00000042766	Trim46	TRIFIC	tripartite motif-containing 46	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-31141297-3	chr2	31141259	31141459	+	859.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355105, intron 1 of 15)	CpG	649.0	NM_001355106	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-158155790-4	chr2	158155692	158155892	+	974.4833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9400.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-85645371-2	chr15	85645271	85645471	+	975.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58402.0	NR_110483	102800312.0	Mm.33117	NR_110483		Lncppara	Lincppara|Mirlet7bhg|linc-Ppara	long noncoding RNA near Ppara	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-108448254-3	chr6	108448175	108448375	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 44 of 61)	intron (NM_010585, intron 44 of 61)	-41468.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120581131-4	chr11	120581026	120581226	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133796, intron 1 of 5)	CpG	494.0	NM_133796	192662.0	Mm.30016	NM_133796	ENSMUSG00000025132	Arhgdia	5330430M07Rik|Gdi-1|Rho-GDI|RhoDGI|RhoGDI-1	Rho GDP dissociation inhibitor (GDI) alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-127202449-4	chr1	127202362	127202562	+	965.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-2524.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96238338-3	chr3	96238248	96238448	+	634.333313	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	TTS (NM_178216)	TTS (NM_178216)	779.0	NM_054045	97114.0	Mm.358797	NM_054045	ENSMUSG00000081058	Hist2h3c2	H3-614|H3.2-614|Hist2h3c2-ps|Hist2h3ca1|M32461	histone cluster 2, H3c2	protein-coding	1.68118030096902	0.516657019942441	1.18431683614623	1.35021404168684	0.480934458473955	0.51938578337874	0.728242130187377	0.496483031799834	-3.99512340576845	0.0199900817745501	0.179521707433422
Merged-chr2-58850696-3	chr2	58850588	58850788	+	926.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362394, intron 11 of 13)	MTEa|LTR|ERVL-MaLR	95504.0	NM_029692	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-120202363-5	chr10	120202317	120202517	+	903.2333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028679)	promoter-TSS (NM_028679)	-287.0	NM_001359184	73914.0	Mm.146194	NM_028679	ENSMUSG00000020227	Irak3	4833428C18Rik|AI563835|IRAK-M	interleukin-1 receptor-associated kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-8288931-3	chr6	8288851	8289051	+	853.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302354, intron 2 of 3)	intron (NM_001302354, intron 2 of 3)	29663.0	NM_001302353	100036521.0	Mm.446106	NM_001302353	ENSMUSG00000089862	Umad1	Gm16039	UMAP1-MVP12 associated (UMA) domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-53708082-4	chr6	53707963	53708163	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	112762.0	NM_025817	66873.0	Mm.422727	NM_025817	ENSMUSG00000043496	Tril	1200009O22Rik|AI316813|mKIAA0644	TLR4 interactor with leucine-rich repeats	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-143294828-2	chr6	143294728	143294928	+	697.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_027803, intron 3 of 3)	RSINE1|SINE|B4	48940.0	NR_027803	52285.0	Mm.354898	NM_001033129		D6Ertd474e	1700001I24Rik|AU023129	DNA segment, Chr 6, ERATO Doi 474, expressed	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3856877-3	chr12	3856782	3856982	+	839.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007872, intron 3 of 22)	intron (NM_007872, intron 3 of 22)	5362.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118791559-2	chr9	118791459	118791659	+	751.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 3 of 13)	intron (NM_001113514, intron 3 of 13)	79867.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98357561-2	chr11	98357461	98357661	+	776.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021547)	promoter-TSS (NM_021547)	722.0	NR_045477	69338.0	Mm.398308	NR_045477	ENSMUSG00000085944	1700003D09Rik	-	RIKEN cDNA 1700003D09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-122597592-3	chr10	122597403	122597603	+	945.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27612.0	NR_040616	319272.0	Mm.411763	NR_040616	ENSMUSG00000112095	A130077B15Rik	-	RIKEN cDNA A130077B15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97819162-4	chr6	97819056	97819256	+	888.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113198, intron 1 of 9)	intron (NM_001113198, intron 1 of 9)	12098.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	0.297217595588746	-0.392079339541338	-0.396047421680551	-0.100343030459652	-0.403413570312837	-0.197034468502404	-0.395172929627697	-0.398569844790865	-2.61732697568341	0.298529457006414	1
Merged-chr7-31002844-4	chr7	31002743	31002943	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20922.0	NM_001242647	76415.0	Mm.259739	NM_175240	ENSMUSG00000046826	Fam187b	1700020B09Rik|Tmem162	family with sequence similarity 187, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-25053084-4	chr16	25052995	25053195	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6544.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122394589-2	chr5	122394489	122394689	+	587.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019824, intron 1 of 6)	ID_B1|SINE|B4	2711.0	NM_019824	56378.0	Mm.275942	NM_019824	ENSMUSG00000029465	Arpc3	1110006A04Rik|p21-ARC|p21-Ar|p21Arc	actin related protein 2/3 complex, subunit 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-22714675-2	chr10	22714575	22714775	+	652.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011603, intron 1 of 6)	intron (NM_011603, intron 1 of 6)	14757.0	NR_106123	102465768.0		NR_106123	ENSMUSG00000098714	Mir7663	Gm28034|mmu-mir-7663	microRNA 7663	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-49197690-2	chr13	49197590	49197790	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	10143.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-64179320-4	chr9	64179213	64179413	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183316)	promoter-TSS (NM_183316)	16.0	NM_183316	330959.0	Mm.24082	NM_183316	ENSMUSG00000032398	Snapc5	2010103A03Rik	small nuclear RNA activating complex, polypeptide 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-181286898-2	chr2	181286798	181286998	+	892.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198169, intron 1 of 9)	intron (NM_198169, intron 1 of 9)	1068.0	NM_198169	229004.0	Mm.220423	NM_198169	ENSMUSG00000038705	Gmeb2	AI839884	glucocorticoid modulatory element binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-142611342-4	chr2	142611241	142611441	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR50|LTR|ERVL	290123.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-95670051-3	chr10	95669949	95670149	+	941.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	-105903.0	NM_001358996	71207.0	Mm.24397	NM_027722	ENSMUSG00000020029	Nudt4	4933436C10Rik|DIPP-2|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P	nudix (nucleoside diphosphate linked moiety X)-type motif 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-98966827-4	chr10	98966784	98966984	+	969.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359507, intron 1 of 21)	intron (NM_001359507, intron 1 of 21)	51732.0	NM_026482	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-22225732-4	chr9	22225649	22225849	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172763)	promoter-TSS (NM_172763)	37.0	NM_001164624	235047.0	Mm.290849	NM_172763	ENSMUSG00000057982	Zfp809	BB114266|C330026E23	zinc finger protein 809	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-38388465-4	chr15	38388360	38388560	+	816.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13A1|LTR|ERVK	-87749.0	NM_001289471	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-130900444-4	chr7	130900327	130900527	+	931.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133942, intron 4 of 9)	intron (NM_133942, intron 4 of 9)	-7841.0	NR_106028	102466219.0		NR_106028	ENSMUSG00000104914	Mir7061	mmu-mir-7061	microRNA 7061	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-75153632-2	chr5	75153535	75153735	+	849.5	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001347719, exon 1 of 16)	5' UTR (NM_001347719, exon 1 of 16)	699.0	NM_001347719	18595.0	Mm.221403	NM_011058	ENSMUSG00000029231	Pdgfra	AI115593|CD140a|Pdgfr-2	platelet derived growth factor receptor, alpha polypeptide	protein-coding	1.91725814072155	1.29413382702942	2.97227895731855	3.01245257225446	2.06298695885558	1.30208358166447	2.58925952279233	2.03866541679829	-0.898519095610249	0.372321780125345	0.865109408625856
Merged-chr10-59265817-4	chr10	59265718	59265918	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43896.0	NM_172939	268301.0	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166428203-1	chr2	166428103	166428303	+	541.0	f1_c57bl6.idr	Intergenic	Intergenic	-19248.0	NR_015558	319684.0	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-149831287-4	chr1	149831191	149831391	+	992.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008869, intron 17 of 17)	intron (NM_008869, intron 17 of 17)	91148.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-40934621-4	chr17	40934520	40934720	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008650)	promoter-TSS (NM_008650)	-65.0	NM_008650	17850.0	Mm.259884	NM_008650	ENSMUSG00000023921	Mut	D230010K02Rik|Mcm	methylmalonyl-Coenzyme A mutase	protein-coding	4.70974149368533	4.49162790623647	4.91123114667526	4.39260171861955	4.96120746134164	4.88469541101156	4.54541254034059	4.55993061243844	0.136323915016556	0.699248613457992	0.998431161219273
Merged-chr13-56613711-4	chr13	56613625	56613825	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155548, intron 1 of 16)	intron (NR_155548, intron 1 of 16)	4139.0	NR_155548	21810.0	Mm.14455	NM_009369	ENSMUSG00000035493	Tgfbi	68kDa|AI181842|AI747162|Beta-ig|big-h3	transforming growth factor, beta induced	protein-coding	4.1769690302973	4.1933523164198	3.84067649166078	5.05671420317684	3.63923213956322	4.22299420740479	4.27341807295899	4.14878747933732	-0.418397164500949	0.352788850609552	0.852849893203241
Merged-chr4-138024851-3	chr4	138024758	138024958	+	970.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355699, intron 1 of 32)	intron (NM_001355699, intron 1 of 32)	27033.0	NM_001355700	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	1.99046966027567	1.29340218501529	1.88289955942901	2.21124804188295	1.75446984846576	1.9616312361738	2.40086054243692	2.85392396260935	1.06029899268759	0.271363073060819	0.774939437067027
Merged-chr4-115057083-4	chr4	115056973	115057173	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001287388)	promoter-TSS (NM_001287388)	647.0	NM_011527	21349.0	Mm.239869	NM_011527	ENSMUSG00000028717	Tal1	Hpt|SCL/tal-1|Scl|bHLHa17|tal-1	T cell acute lymphocytic leukemia 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-75759797-1	chr12	75759697	75759897	+	553.0	f1_c57bl6.idr	Intergenic	Intergenic	-24068.0	NM_030750	81535.0	Mm.280199	NM_030750	ENSMUSG00000021054	Sgpp1	AI463453|SPP|SPP1|Spph1	sphingosine-1-phosphate phosphatase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-35839628-3	chr1	35839509	35839709	+	880.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-228791.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-23976709-2	chr17	23976613	23976813	+	668.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1483.0	NM_013921	30943.0	Mm.142568	NM_013921	ENSMUSG00000024124	Prss30	2010015P21Rik|Disp|Disp1|Tmprss8	protease, serine 30	protein-coding	1.46286530348232	2.61510186178733	1.90348602889491	1.3444612468231	1.62885536684088	2.24926633500696	1.13557971136221	2.38010705410532	0.0114450123194392	0.991558420482052	0.998431161219273
Merged-chr4-137860867-2	chr4	137860767	137860967	+	554.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1370.0	NM_199307	230857.0	Mm.401062	NM_199307	ENSMUSG00000057530	Ece1	AW322500|ECE-1|ECE-1a|ECE-1b|ECE-1d	endothelin converting enzyme 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-99232681-2	chr5	99232581	99232781	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_181318, intron 6 of 13)	MTE2a|LTR|ERVL-MaLR	20246.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-37109415-2	chr16	37109315	37109515	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001114611, exon 26 of 26)	3' UTR (NM_001114611, exon 26 of 26)	97629.0	NM_001159369	77782.0	Mm.259114	NM_029977	ENSMUSG00000034206	Polq	A430110D14Rik	polymerase (DNA directed), theta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-112630675-2	chr12	112630575	112630775	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007421, intron 2 of 12)	intron (NM_007421, intron 2 of 12)	10628.0	NM_007421	11565.0	Mm.3440	NM_007421	ENSMUSG00000011148	Adssl1	AI528595|Adss|Adss1	adenylosuccinate synthetase like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99700211-2	chr15	99700111	99700311	+	645.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001289791, exon 10 of 10)	3' UTR (NM_001289791, exon 10 of 10)	-2076.0	NM_031842	83797.0	Mm.273756	NM_031842	ENSMUSG00000023018	Smarcd1	AA407987|Baf60a|D15Kz1	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1	protein-coding	-0.176994749790558	0.164418783826268	-0.168757409949961	0.222233701686944	-0.176234205507549	0.0186735844212287	-0.167866287091509	0.22773453056757	-0.334560331002612	0.882571132031271	1
Merged-chr6-59183409-2	chr6	59183309	59183509	+	612.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-25461.0	NM_001081145	68140.0	Mm.25843	NM_001081145	ENSMUSG00000049232	Tigd2	3632410O17Rik	tigger transposable element derived 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-170820359-3	chr1	170820215	170820415	+	707.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081304, intron 7 of 15)	RLTR26B_MM|LTR|ERVK	47456.0	NM_001081304	226641.0	Mm.377046	NM_001081304	ENSMUSG00000026663	Atf6	9130025P16Rik|9630036G24|AA789574|Atf6alpha|ESTM49	activating transcription factor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-70658246-2	chr9	70658146	70658346	+	584.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1072.0	NM_172772	235461.0	Mm.170855	NM_172772	ENSMUSG00000042444	Mindy2	AI465301|B230380D07Rik|Fam63b|mKIAA1164	MINDY lysine 48 deubiquitinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-58211125-4	chr11	58211020	58211220	+	972.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3857.0	NM_019440	54396.0	Mm.458517	NM_019440	ENSMUSG00000069874	Irgm2	AI481100|GTPI|Ifggd2|Iigp2	immunity-related GTPase family M member 2	protein-coding	4.39301403139296	4.6394120033967	4.826511768844	4.89788583293676	5.20977700010953	4.72557388463633	5.3514357448039	4.92026646652294	0.456528080404284	0.173992410905969	0.641919003929331
Merged-chr4-63494942-4	chr4	63494828	63495028	+	950.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_028640, exon 1 of 12)	exon (NM_028640, exon 1 of 12)	1063.0	NM_001008793	73750.0	Mm.300397	NM_028640	ENSMUSG00000039137	Whrn	1110035G07Rik|AW122018|AW742671|C430046P22Rik|Dfnb31|Ush2d|wi	whirlin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-131955423-3	chr2	131955350	131955550	+	875.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001278520, exon 3 of 3)	3' UTR (NM_001278520, exon 3 of 3)	4413.0	NM_001278520	26434.0	Mm.180750	NM_023043	ENSMUSG00000027338	Prnd	AI450264|Dpl|PrPLP|doppel	prion like protein doppel	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117379479-2	chr8	117379379	117379579	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028941, intron 2 of 20)	intron (NM_028941, intron 2 of 20)	30309.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-120840481-2	chr7	120840381	120840581	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2350.0	NM_007908	13631.0	Mm.25997	NM_007908	ENSMUSG00000035064	Eef2k	C86191|eEF-2K	eukaryotic elongation factor-2 kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-72380832-4	chr4	72380742	72380942	+	913.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	179598.0	NR_027923	68285.0	Mm.37541	NR_027923		C630043F03Rik	AI851307	RIKEN cDNA C630043F03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-68072707-2	chr15	68072607	68072807	+	665.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	186149.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139409602-4	chr5	139409472	139409672	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177000, intron 1 of 1)	intron (NM_177000, intron 1 of 1)	3185.0	NM_177000	319772.0	Mm.440271	NM_177000	ENSMUSG00000044092	C130050O18Rik	-	RIKEN cDNA C130050O18 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32428693-4	chr2	32428590	32428790	+	848.258301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146118, intron 1 of 10)	intron (NM_146118, intron 1 of 10)	2461.0	NM_001164358	227731.0	Mm.37395	NM_146118	ENSMUSG00000026819	Slc25a25	1110030N17Rik|MCSC|mKIAA1896	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-88763585-4	chr4	88763496	88763696	+	922.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	2822.0	NM_001085531	545645.0	Mm.489553	NM_001085531	ENSMUSG00000100505	Gm13283	EG545645	predicted gene 13283	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-79373988-2	chr8	79373888	79374088	+	776.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008539, intron 1 of 6)	intron (NM_008539, intron 1 of 6)	25480.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-76964716-1	chr14	76964616	76964816	+	669.0	f0_balb.idr	Intergenic	Intergenic	71901.0	NM_172488	210808.0	Mm.89278	NM_172488	ENSMUSG00000044350	Lacc1	9030625A04Rik	laccase domain containing 1	protein-coding	0.476813288230175	0.473853763671764	0.133355084598667	0.129325931574617	0.578976060148203	0.139777880064671	0.13450897676013	0.640613474111468	0.604741275475959	0.766833443219664	1
Merged-chr7-125553350-8	chr7	125553251	125553451	+	905.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001008700, intron 1 of 10)	intron (NM_001008700, intron 1 of 10)	1069.0	NM_001008700	16190.0	Mm.233802	NM_010557	ENSMUSG00000030748	Il4ra	CD124|Il4r	interleukin 4 receptor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-88436803-4	chr4	88436655	88436855	+	908.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025760, intron 2 of 6)	intron (NM_025760, intron 2 of 6)	2171.0	NM_025760	66775.0	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	2.92527476406248	2.80740806095691	2.1574427935675	3.77043330268833	2.61982186808526	3.22483186544914	4.7258434339581	3.45974194255183	1.06750007936234	0.124743685334835	0.553113157211875
Merged-chr5-34236248-3	chr5	34236152	34236352	+	858.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001015039, intron 2 of 12)	intron (NM_001015039, intron 2 of 12)	-48542.0	NM_010753	17122.0	Mm.259260	NM_010753	ENSMUSG00000037235	Mxd4	2810410A03Rik|Mad4|bHLHc12	Max dimerization protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106786399-2	chr11	106786299	106786499	+	896.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355676, intron 4 of 13)	intron (NM_001355676, intron 4 of 13)	2095.0	NM_007840	13207.0	Mm.491096	NM_007840	ENSMUSG00000020719	Ddx5	2600009A06Rik|G17P1|HUMP68|Hlr1|p68	DEAD (Asp-Glu-Ala-Asp) box polypeptide 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95997613-2	chr3	95997513	95997713	+	830.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1774.0	NM_023320	67220.0	Mm.458147	NM_023320	ENSMUSG00000015745	Plekho1	2810052M02Rik|CKIP-1|Ckip1|JZA-20|Jza2	pleckstrin homology domain containing, family O member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152608987-4	chr1	152608889	152609089	+	944.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346119, intron 2 of 17)	intron (NM_001346119, intron 2 of 17)	16228.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30170770-1	chr7	30170670	30170870	+	698.0	f1_balb.idr	intron (NM_001033540, intron 1 of 2)	intron (NM_001033540, intron 1 of 2)	848.0	NM_001033540	330503.0	Mm.434058	NM_001033540	ENSMUSG00000066647	Gm5113	B430201F14|EG330503	predicted gene 5113	protein-coding	0.381742611892964	0.622781770122799	0.129401913662266	0.124896337399323	0.498048111719445	0.7535778142409	0.130689766738176	0.125683524241512	0.516185858326291	0.79836420818442	1
Merged-chr11-70499843-5	chr11	70499771	70499971	+	908.2333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5403.0	NM_029360	75604.0	Mm.24400	NM_029360	ENSMUSG00000018919	Tm4sf5	2010003F10Rik|AI323987	transmembrane 4 superfamily member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-85566432-1	chr18	85566332	85566532	+	718.0	f1_balb.idr	Intergenic	(CATA)n|Simple_repeat|Simple_repeat	-614908.0	NM_025969	67105.0	Mm.250617	NM_025969	ENSMUSG00000024645	Timm21	1700034H14Rik|2700002I20Rik	translocase of inner mitochondrial membrane 21	protein-coding	-0.431261907694537	-0.67960577030231	-0.682767932987931	-0.685199948050192	-0.547042294226109	-0.678891440462905	-0.118913208007501	-0.684775568161506	1.49540454904544	0.587087184473432	1
Merged-chr11-3124672-2	chr11	3124594	3124794	+	773.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_003517, intron 1 of 6)	intron (NR_003517, intron 1 of 6)	673.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-80899447-3	chr15	80899350	80899550	+	870.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177124, intron 11 of 21)	intron (NM_177124, intron 11 of 21)	-40589.0	NR_039573	100628612.0		NR_039573	ENSMUSG00000092868	Mir5113	mir-5113|mmu-mir-5113|mu-mir-5113	microRNA 5113	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-50775405-4	chr9	50775393	50775593	+	972.0595089999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_133981, exon 1 of 15)	exon (NM_133981, exon 1 of 15)	268.0	NR_045601	102580.0	Mm.160035	NM_133981	ENSMUSG00000032059	Alg9	8230402H15Rik|AI747665|B430313H07Rik|Dibd1	asparagine-linked glycosylation 9 (alpha 1,2 mannosyltransferase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-21363481-4	chr5	21363395	21363595	+	821.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029195, intron 2 of 18)	L1MA5|LINE|L1	-9178.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-95557531-4	chr9	95557418	95557618	+	924.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2299.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-33128395-4	chr12	33128302	33128502	+	844.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015602, intron 4 of 5)	L1MC1|LINE|L1	19184.0	NR_015602	320046.0	Mm.208337	NR_015602	ENSMUSG00000052125	F730043M19Rik	-	RIKEN cDNA F730043M19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-61147672-4	chr10	61147577	61147777	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001316674)	promoter-TSS (NM_001316674)	7.0	NM_009163	20397.0	Mm.412319	NM_009163	ENSMUSG00000020097	Sgpl1	AI428538|D10Xrf456|S1PL|Spl	sphingosine phosphate lyase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98926041-2	chr11	98925941	98926141	+	678.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11655.0	NM_009024	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5038857-4	chr19	5038762	5038962	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175383)	promoter-TSS (NM_175383)	36.0	NM_175383	108902.0	Mm.29628	NM_175383	ENSMUSG00000047379	B4gat1	1500032M01Rik|B3gnt1|B3gnt6|BETA3GNT1|iGAT|iGNT	beta-1,4-glucuronyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-102441722-4	chr7	102441622	102441822	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009103)	promoter-TSS (NM_009103)	27.0	NM_009103	20133.0	Mm.197486	NM_009103	ENSMUSG00000030978	Rrm1	RnrM1	ribonucleotide reductase M1	protein-coding	5.96370326763969	5.42048768648349	5.73955818633987	5.2260173205411	4.99338422909121	5.52162777396656	5.39438076719221	6.1047895964937	-0.068576647686601	0.823805128450201	0.998431161219273
Merged-chr7-122974077-2	chr7	122973977	122974177	+	546.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175023, intron 1 of 2)	intron (NM_175023, intron 1 of 2)	3513.0	NM_175023	19647.0	Mm.4480	NM_011247	ENSMUSG00000030779	Rbbp6	4933422O15Rik|AI316869|BB233631|C030034J04Rik|C77662|P2P-R|PACT	retinoblastoma binding protein 6, ubiquitin ligase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-30259747-2	chr15	30259647	30259847	+	689.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355502, intron 1 of 21)	intron (NM_001355502, intron 1 of 21)	87154.0	NM_008729	18163.0	Mm.321648	NM_008729	ENSMUSG00000022240	Ctnnd2	Catnd2|Nprap|neurojugin	catenin (cadherin associated protein), delta 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119053426-4	chr11	119053319	119053519	+	868.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-12506.0	NM_013926	30951.0	Mm.99953	NM_013926	ENSMUSG00000025578	Cbx8	Pc3	chromobox 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-62056606-4	chr15	62056502	62056702	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132746, intron 1 of 6)	intron (NR_132746, intron 1 of 6)	17345.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-30786728-4	chr11	30786631	30786831	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134013, intron 1 of 46)	intron (NM_134013, intron 1 of 46)	14956.0	NM_134013	103554.0	Mm.240066	NM_134013	ENSMUSG00000040850	Psme4	AA409398|AU041366|TEMO|mKIAA0077	proteasome (prosome, macropain) activator subunit 4	protein-coding	3.44848127094232	4.01748186700982	2.58294968680899	3.10124636174406	3.05364942855212	3.32536796967782	3.11559756693085	3.01908331297111	-0.430094186592558	0.484237179100892	0.931207887927275
Merged-chr2-62638828-4	chr2	62638716	62638916	+	726.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027835, intron 2 of 15)	Lx9|LINE|L1	7439.0	NM_027835	71586.0	Mm.136224	NM_027835	ENSMUSG00000026896	Ifih1	9130009C22Rik|Helicard|Hlcd|MDA5|RLR-2	interferon induced with helicase C domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-105589544-2	chr14	105589444	105589644	+	843.833374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_102319)	promoter-TSS (NR_102319)	-5.0	NR_102319	380930.0	Mm.427836	NR_102319	ENSMUSG00000115149	9330188P03Rik	Gm1589|mgt-6	RIKEN cDNA 9330188P03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-107293962-2	chr8	107293853	107294053	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_001286260, intron 1 of 12)	CpG	483.0	NM_133957	54446.0	Mm.390057	NM_018823	ENSMUSG00000003847	Nfat5	AI225870|B130038B15Rik|CAG-8|CAG80|NFATL1|OREBP|TonEBP|mKIAA0827|nfatz	nuclear factor of activated T cells 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-14192236-4	chr2	14192143	14192343	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081310, intron 1 of 3)	intron (NM_001081310, intron 1 of 3)	17719.0	NM_001081310	625286.0	Mm.158781	NM_001081310	ENSMUSG00000061531	Tmem236	2010003H20Rik|Fam23a|Gm613	transmembrane protein 236	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-27863166-3	chr15	27863059	27863259	+	834.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081302, intron 11 of 56)	intron (NM_001081302, intron 11 of 56)	162689.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-19526523-4	chr10	19526424	19526624	+	985.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31881.0	NR_152785	102635880.0	Mm.331974	NR_152784	ENSMUSG00000110902	Gm33104	-	predicted gene, 33104	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-73118274-2	chr15	73118174	73118374	+	676.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153178, intron 13 of 18)	intron (NM_153178, intron 13 of 18)	27862.0	NM_053068	93696.0	Mm.23095	NM_053068	ENSMUSG00000068391	Chrac1	2410152E03Rik|2810406L04Rik|YCL1	chromatin accessibility complex 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-73123957-4	chr14	73123865	73124065	+	948.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18545.0	NM_001170694	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-17656918-2	chr15	17656818	17657018	+	994.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	712709.0	NR_045711	70886.0	Mm.399021	NR_045711	ENSMUSG00000098150	4921515E04Rik	-	RIKEN cDNA 4921515E04 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-34857828-3	chr18	34857739	34857939	+	850.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3368.0	NM_007913	13653.0	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-22873498-6	chr11	22873265	22873465	+	824.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13029.0	NM_001169114	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-142474624-4	chr3	142474521	142474721	+	840.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22313.0	NM_153564	229898.0	Mm.459245	NM_153564	ENSMUSG00000105504	Gbp5	5330409J06Rik|Gbp5a	guanylate binding protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47791743-2	chr17	47791643	47791843	+	561.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001161723, exon 9 of 9)	exon (NM_001161723, exon 9 of 9)	5999.0	NM_011549	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69991560-4	chr11	69991473	69991673	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_026017)	TTS (NM_026017)	203.0	NM_019749	56486.0	Mm.272460	NM_019749	ENSMUSG00000018567	Gabarap	-	gamma-aminobutyric acid receptor associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124725286-2	chr6	124725186	124725386	+	548.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_013545, exon 10 of 16)	exon (NM_013545, exon 10 of 16)	-6896.0	NR_029792	723944.0		NR_029792	ENSMUSG00000065462	Mir200c	Mirn200c|mir-200c	microRNA 200c	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81492866-2	chr10	81492766	81492966	+	755.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_134009, exon 4 of 14)	exon (NM_134009, exon 4 of 14)	3497.0	NM_134009	103425.0	Mm.302791	NM_134009	ENSMUSG00000020238	Ncln	3100002P13Rik|AW120537	nicalin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-108092814-2	chr9	108092714	108092914	+	703.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_146226, exon 5 of 22)	exon (NM_146226, exon 5 of 22)	1666.0	NM_146226	235606.0	Mm.219639	NM_146226	ENSMUSG00000032590	Apeh	-	acylpeptide hydrolase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-43091125-2	chr17	43091025	43091225	+	641.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	67166.0	NR_045155	545207.0	Mm.329050	NR_045153		E130008D07Rik	-	RIKEN cDNA E130008D07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-21737732-4	chr19	21737640	21737840	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40600.0	NM_001033759	83921.0	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129033731-3	chr4	129033620	129033820	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24551.0	NM_029219	75234.0	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-4555427-4	chr2	4555317	4555517	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 11 of 23)	intron (NM_001177843, intron 11 of 23)	-4337.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-59604227-2	chr14	59604127	59604327	+	596.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6268.0	NM_001168536	71891.0	Mm.439850	NM_027986	ENSMUSG00000021982	Cdadc1	2310010M10Rik|AI449174|AI463398|BB130816|NYD-SP15	cytidine and dCMP deaminase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-77903092-4	chr10	77903076	77903276	+	744.275024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145152)	promoter-TSS (NM_145152)	-640.0	NM_145152	237387.0	Mm.133301	NM_145152	ENSMUSG00000051652	Lrrc3	1300011L04Rik|C21orf102	leucine rich repeat containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-142400368-3	chr5	142400298	142400498	+	758.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-1099.0	NM_199068	17425.0	Mm.24214	NM_010812	ENSMUSG00000056493	Foxk1	A630048H08Rik|AI463295|Gm10868|Mnf	forkhead box K1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5572934-4	chr19	5572855	5573055	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4931.0	NM_001033448	381201.0	Mm.441906	NM_001033448	ENSMUSG00000049562	Ap5b1	Gm962|beta-5	adaptor-related protein complex 5, beta 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-33426143-4	chr2	33426041	33426241	+	938.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276332, intron 1 of 1)	intron (NM_001276332, intron 1 of 1)	5183.0	NM_001085507	241311.0	Mm.296512	NM_001085507	ENSMUSG00000068966	Zbtb34	Gm349|mKIAA1993	zinc finger and BTB domain containing 34	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167733433-2	chr2	167733333	167733533	+	655.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42256.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-61350730-2	chr9	61350630	61350830	+	589.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-21636.0	NM_001083928	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-44658437-4	chr10	44658347	44658547	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-199699.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	5.08228775607715	4.38712431679654	2.96589806193955	4.79662078554353	5.16264911644088	3.39461712881003	3.69487233465832	4.15014620783397	-0.27995091370121	0.608471130955371	0.974576632476413
Merged-chr14-103468869-2	chr14	103468769	103468969	+	561.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44472.0	NM_022886	64929.0	Mm.244003	NM_022886	ENSMUSG00000022123	Scel	9230114I02Rik	sciellin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-119847523-2	chr8	119847423	119847623	+	749.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6944.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-73438839-2	chr12	73438739	73438939	+	768.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29276.0	NR_046013	380765.0	Mm.490476	NR_046013	ENSMUSG00000056359	D830013O20Rik	Gm891	RIKEN cDNA D830013O20 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80390319-2	chr7	80390219	80390419	+	756.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001081454, exon 16 of 16)	3' UTR (NM_001081454, exon 16 of 16)	-2373.0	NM_010194	14159.0	Mm.48757	NM_010194	ENSMUSG00000053158	Fes	AI586313|BB137047|FPS|c-fes	feline sarcoma oncogene	protein-coding	0.710287673540112	0.464400680708936	0.456822449759227	0.987137231883093	0.828883001762843	1.09032661046863	0.458495059901496	0.885244452378463	0.892400387983732	0.59594763204672	1
Merged-chr3-89436931-4	chr3	89436785	89436985	+	974.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146131, intron 1 of 10)	intron (NM_146131, intron 1 of 10)	181.0	NM_146131	229534.0	Mm.65906	NM_146131	ENSMUSG00000042613	Pbxip1	4732463H20Rik	pre B cell leukemia transcription factor interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44233406-4	chr9	44233306	44233506	+	945.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007619, intron 1 of 15)	intron (NM_007619, intron 1 of 15)	640.0	NM_007619	12402.0	Mm.266871	NM_007619	ENSMUSG00000034342	Cbl	4732447J05Rik|Cbl-2|c-Cbl|cbl	Casitas B-lineage lymphoma	protein-coding	2.96908699815471	2.30640049567686	2.53011640814421	2.58088056329134	2.07364784835769	2.8864771919994	3.49777566338735	2.89964970890206	0.590420396642412	0.424152009552598	0.90112899491419
Merged-chr15-81195531-2	chr15	81195431	81195631	+	800.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16A1|LTR|ERVL	4678.0	NR_015603	67638.0	Mm.390832	NM_026288	ENSMUSG00000047938	4930483J18Rik	-	RIKEN cDNA 4930483J18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-98212593-4	chr12	98212466	98212666	+	729.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008079, intron 14 of 16)	L1_Mus3|LINE|L1	46893.0	NM_008079	14420.0	Mm.5120	NM_008079	ENSMUSG00000021003	Galc	2310068B06Rik|A930008M05Rik|AW212969|AW413532|Gacy|twi|twitcher	galactosylceramidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-77664291-3	chr10	77664175	77664375	+	955.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-22294.0	NM_001287074	252974.0	Mm.221237	NM_145855	ENSMUSG00000069581	Tspear	C330046G03Rik|ORF65|TSP-EAR|Tnep1	thrombospondin type laminin G domain and EAR repeats	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-45782776-4	chr19	45782616	45782816	+	974.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023799, intron 1 of 15)	intron (NM_023799, intron 1 of 15)	837.0	NR_151594	76055.0	Mm.122725	NM_023799	ENSMUSG00000025220	Mgea5	Hy5|Ncoat|OGA	meningioma expressed antigen 5 (hyaluronidase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-42355699-2	chr6	42355599	42355799	+	702.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289618, intron 4 of 9)	intron (NM_001289618, intron 4 of 9)	5871.0	NM_001289618	22793.0	Mm.282303	NM_011777	ENSMUSG00000029860	Zyx	9530098H06Rik|R75157	zyxin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44378018-2	chr9	44377918	44378118	+	615.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-1472.0	NM_021395	12282.0	Mm.116721	NM_021395	ENSMUSG00000032115	Hyou1	AI415631|CBP-140|Cab140|Grp170|Orp150	hypoxia up-regulated 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-88034554-1	chr4	88034454	88034654	+	728.0	f0_balb.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-1147.0	NM_027326	70122.0	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-42275282-4	chr18	42275190	42275390	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033452)	promoter-TSS (NR_033452)	-63.0	NM_172626	225432.0	Mm.329400	NM_172626	ENSMUSG00000024491	Rbm27	A730010I06|AI043120|Psc1|mKIAA1311	RNA binding motif protein 27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-130848610-2	chr5	130848510	130848710	+	592.43335	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	399818.0	NM_021371	140904.0	Mm.40875	NM_021371	ENSMUSG00000060371	Caln1	9630012C17Rik|Cabp8|MNCb-0849	calneuron 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-155218267-3	chr1	155218163	155218363	+	786.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	59560.0	NM_021433	58244.0	Mm.66264	NM_021433	ENSMUSG00000026470	Stx6	2310039E05Rik|2410005I16Rik|AA437559|AI415714|AI845861	syntaxin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-95790113-2	chr15	95790013	95790213	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253813)	promoter-TSS (NM_001253813)	-730.0	NM_175344	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-25621666-2	chr15	25621566	25621766	+	899.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019472)	promoter-TSS (NM_019472)	-884.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-134542666-2	chr4	134542566	134542766	+	595.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029100, intron 8 of 11)	intron (NM_029100, intron 8 of 11)	-7279.0	NM_029759	76824.0	Mm.30153	NM_029759	ENSMUSG00000046671	Mtfr1l	2410166I05Rik|AI480750|Fam54b	mitochondrial fission regulator 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-77111487-2	chr14	77111387	77111587	+	929.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001310648, exon 7 of 7)	exon (NM_001310648, exon 7 of 7)	-45276.0	NM_001253759	239188.0	Mm.441158	NM_172813	ENSMUSG00000022012	Enox1	B230207J08|D230005D02Rik	ecto-NOX disulfide-thiol exchanger 1	protein-coding	1.17195642264139	0.75826570084339	1.72872432828733	1.24306968941063	0.717238585609062	0.761398918723389	1.74534656712481	1.25035927667819	-0.274042371710347	0.850859616481235	0.998431161219273
Merged-chr4-116631124-4	chr4	116631022	116631222	+	999.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3171.0	NM_016777	50927.0	Mm.257181	NM_016777	ENSMUSG00000028693	Nasp	5033430J04Rik|AI131596|AI317140|D4Ertd767e|Epcs32|Nasp-T	nuclear autoantigenic sperm protein (histone-binding)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-47355337-1	chr14	47355237	47355437	+	630.0	f1_balb.idr	Intergenic	Intergenic	-18523.0	NM_010705	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	2.6194509899088	1.11865837481643	1.08711058920909	1.06165955158662	2.11070920830908	2.59765517300947	1.58798649785476	2.65303889226109	1.39522501975851	0.23491734096398	0.731086761108682
Merged-chr15-73687705-3	chr15	73687602	73687802	+	747.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19803.0	NM_173365	239530.0	Mm.122997	NM_173365	ENSMUSG00000045281	Gpr20	A430106B11Rik	G protein-coupled receptor 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-103234229-4	chr9	103234128	103234328	+	758.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3942.0	NM_133977	22041.0	Mm.37214	NM_133977	ENSMUSG00000032554	Trf	AI266983|Cd176|HP|Tf|Tfn|hpx	transferrin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24151997-2	chr17	24151897	24152097	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1075.0	NM_001286662	18607.0	Mm.10504	NM_011062	ENSMUSG00000024122	Pdpk1	Pdk1	3-phosphoinositide dependent protein kinase 1	protein-coding	-0.66774887130092	-0.654896913885685	-0.659086523681787	-0.662332765575608	0.258963101593052	-0.65395528424875	-0.459492301893324	-0.661764778187988	3.54856951565148	0.196059589367953	1
Merged-chr8-111881853-2	chr8	111881753	111881953	+	674.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5178.0	NM_025781	66817.0	Mm.345350	NM_025781	ENSMUSG00000031953	Tmem170	9030409E16Rik|AA403674|D8Bwg1414e|Tmem170a	transmembrane protein 170	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-54619102-4	chr11	54618990	54619190	+	958.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252494, intron 7 of 28)	intron (NM_001252494, intron 7 of 28)	22944.0	NM_001252497	192786.0	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-27628700-2	chr15	27628600	27628800	+	665.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013792, intron 1 of 6)	intron (NM_001013792, intron 1 of 6)	1993.0	NM_001013792	432940.0	Mm.309164	NM_001013792	ENSMUSG00000046034	Otulin	C79097|Fam105b|m3Sapc|m7-1Sapc	OTU deubiquitinase with linear linkage specificity	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45053379-4	chr7	45053230	45053430	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175022)	promoter-TSS (NM_175022)	-449.0	NM_175022	233210.0	Mm.219137	NM_175022	ENSMUSG00000046574	Prr12	6720469B10|BC058674	proline rich 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-122595074-2	chr6	122594974	122595174	+	641.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_031159, intron 3 of 7)	ID|SINE|ID	7370.0	NM_031159	11810.0	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	0.634700295057021	-0.502542586528375	-0.298024438174319	-0.512302057740195	-0.518406020152905	-0.50131434077805	-0.506812998735183	-0.511552724678279	-3.83550383703233	0.13382340403474	1
Merged-chr12-112868700-2	chr12	112868600	112868800	+	755.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7784.0	NM_019925	56696.0	Mm.20455	NM_019925	ENSMUSG00000021298	Gpr132	G2a	G protein-coupled receptor 132	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127123622-4	chr10	127123511	127123711	+	760.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2451.0	NM_001171026	216440.0	Mm.295246	NM_177614	ENSMUSG00000040462	Os9	4632413K17Rik|AU022351	amplified in osteosarcoma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-108018011-4	chr3	108017915	108018115	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010358)	promoter-TSS (NM_010358)	-42.0	NM_010358	14862.0	Mm.37199	NM_010358	ENSMUSG00000058135	Gstm1	Gstb-1|Gstb1	glutathione S-transferase, mu 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-29991000-1	chr17	29990900	29991100	+	607.0	f0_balb.idr	Intergenic	Intergenic	-14039.0	NM_148926	21769.0	Mm.220972	NM_148926	ENSMUSG00000044477	Zfand3	AW539211|TEG-27|Tex27	zinc finger, AN1-type domain 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-36730843-3	chr7	36730812	36731012	+	705.233337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172298, intron 1 of 1)	(TCC)n|Simple_repeat|Simple_repeat	32794.0	NM_172298	243931.0	Mm.44141	NM_172298	ENSMUSG00000021217	Tshz3	A630038G13Rik|Tsh3|Zfp537|mKIAA1474|teashirt3	teashirt zinc finger family member 3	protein-coding	1.79749945929861	1.34249522506522	2.45841245035879	1.89255527064505	2.5350279239618	1.84304137977991	2.90140365390657	2.49588991820889	1.31535441867243	0.155558888127824	0.610928767307068
Merged-chr13-111647479-1	chr13	111647379	111647579	+	794.0	f0_balb.idr	Intergenic	Intergenic	-38699.0	NM_172593	218613.0	Mm.31012	NM_172593	ENSMUSG00000032727	Mier3	5730509D14|AU015422|D130064H19Rik	MIER family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-112217370-3	chr7	112217247	112217447	+	970.7333369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB5|LINE|L1	-8489.0	NM_177282	320878.0	Mm.52312	NM_177282	ENSMUSG00000038244	Mical2	5330438E18Rik|9530064J02|MICAL-2|mKIAA0750	microtubule associated monooxygenase, calponin and LIM domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45241151-2	chr7	45241051	45241251	+	969.589294	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001324535, exon 1 of 13)	5' UTR (NM_001324535, exon 1 of 13)	398.0	NM_001324535	381884.0	Mm.490944	NM_001324535	ENSMUSG00000094152	Slc6a16	Gm1084	solute carrier family 6, member 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59079146-3	chr15	59079052	59079252	+	796.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144800, intron 1 of 14)	intron (NM_144800, intron 1 of 14)	2874.0	NM_001146180	211401.0	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-20006756-3	chr3	20006648	20006848	+	717.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001276248, exon 20 of 20)	3' UTR (NM_001276248, exon 20 of 20)	28562.0	NM_001146324	12807.0	Mm.291533	NM_080634	ENSMUSG00000027615	Hps3	coa	HPS3, biogenesis of lysosomal organelles complex 2 subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-67716921-3	chr14	67716799	67716999	+	620.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111028, intron 1 of 11)	intron (NM_001111028, intron 1 of 11)	801.0	NM_001285933	105440.0	Mm.6720	NM_134073	ENSMUSG00000034327	Kctd9	-	potassium channel tetramerisation domain containing 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-62047184-4	chr18	62047081	62047281	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	94106.0	NM_172628	225608.0	Mm.262320	NM_172628	ENSMUSG00000045629	Sh3tc2	D430044G18Rik	SH3 domain and tetratricopeptide repeats 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-57397136-2	chr16	57397036	57397236	+	870.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	43859.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-60685187-2	chr18	60684984	60685184	+	827.875	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001348101, exon 15 of 15)	3' UTR (NM_001348101, exon 15 of 15)	21674.0	NR_045401	328963.0	Mm.417203	NR_045401		G630071F17Rik	G630071F17	RIKEN cDNA G630071F17 gene	ncRNA	1.1255089458263	0.630328191601591	0.981577975905993	0.611116275646155	1.61274154396107	0.632743659362216	0.990298504935178	1.20912882355373	1.4094405582304	0.363619005232035	0.858903333095609
Merged-chr7-143073239-4	chr7	143073121	143073321	+	727.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_020277, exon 23 of 25)	exon (NM_020277, exon 23 of 25)	3853.0	NM_001115085	56844.0	Mm.139675	NM_020285	ENSMUSG00000045752	Tssc4	AA241958|ESTM671070	tumor-suppressing subchromosomal transferable fragment 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-46558882-4	chr4	46558768	46558968	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164804, intron 2 of 11)	intron (NM_001164804, intron 2 of 11)	7572.0	NM_178893	107684.0	Mm.416311	NM_178893	ENSMUSG00000028337	Coro2a	9030208C03Rik|AI563590|IR10	coronin, actin binding protein 2A	protein-coding	5.92234507691196	5.2165077368022	4.74397930456624	5.5510831261883	6.08291065372563	5.66538970222424	5.97624934062972	6.56897225657943	0.758303433474543	0.0117658971704428	0.121906074482705
Merged-chr11-104382095-4	chr11	104381994	104382194	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359634, intron 3 of 14)	B1_Mur2|SINE|Alu	60197.0	NM_001081045	76719.0	Mm.136418	NM_001081045	ENSMUSG00000018412	Kansl1	1700081L11Rik|9430041J06Rik|mKIAA1267	KAT8 regulatory NSL complex subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-47940613-3	chr8	47940499	47940699	+	758.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133791, intron 1 of 22)	intron (NM_133791, intron 1 of 22)	49952.0	NM_133791	52357.0	Mm.235074	NM_133791	ENSMUSG00000031563	Wwc2	5330431C14Rik|AU022508|C85457|D8Ertd594e	WW, C2 and coiled-coil domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-45058469-2	chr2	45058369	45058569	+	903.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355291, intron 2 of 9)	intron (NM_001355291, intron 2 of 9)	-35292.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106161277-2	chr11	106161177	106161377	+	896.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356458)	promoter-TSS (NM_001356458)	-548.0	NM_001356458	67803.0	Mm.21687	NM_172397	ENSMUSG00000040699	Limd2	0610025L06Rik|AI413966	LIM domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-83819833-3	chr10	83819739	83819939	+	687.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	96974.0	NM_001145198	69784.0	Mm.271188	NM_001145198	ENSMUSG00000087651	1500009L16Rik	2700050C19Rik|OCC-1	RIKEN cDNA 1500009L16 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-109914436-4	chr9	109914292	109914492	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F1|LTR|ERVL-MaLR	-17382.0	NM_001205331	17758.0	Mm.217318	NM_008633	ENSMUSG00000032479	Map4	AA407148|MAP-4|Mtap-4|Mtap4	microtubule-associated protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-76402417-3	chr14	76402320	76402520	+	881.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12541.0	NM_001310646	21807.0	Mm.153272	NM_009366	ENSMUSG00000022010	Tsc22d1	AA589566|AW105905|Egr5|TSC-22|Tgfb1i4|Tsc|Tsc22	TSC22 domain family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26691474-4	chr17	26691368	26691568	+	956.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025272, intron 2 of 3)	intron (NM_025272, intron 2 of 3)	15072.0	NM_025272	11974.0	Mm.22602	NM_025272	ENSMUSG00000015575	Atp6v0e	Atp6k|Atp6v0e1|M9.2	ATPase, H+ transporting, lysosomal V0 subunit E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-13992680-1	chr8	13992580	13992780	+	651.0	f0_balb.idr	intron (NR_131137, intron 1 of 2)	intron (NR_131137, intron 1 of 2)	-6260.0	NR_131136	546036.0	Mm.31785	NR_131136	ENSMUSG00000110058	Gm5907	EG546036|Gm45519|Gm845	predicted gene 5907	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-149426540-4	chr3	149426434	149426634	+	865.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	151797.0	NR_040591	381482.0	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA	3.41427886319025	4.57810786154952	4.2396302345153	3.89290850741667	4.06059383577141	4.09560057800246	4.21485946363005	3.35172376072026	-0.166251928579021	0.728856639702898	0.998431161219273
Merged-chr14-50931050-4	chr14	50930939	50931139	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310505)	promoter-TSS (NM_001310505)	-190.0	NM_001310507	219024.0	Mm.239117	NM_001033271	ENSMUSG00000035953	Tmem55b	BC039161|Pip4p1	transmembrane protein 55b	protein-coding	4.30803957054939	5.61518488004222	4.70861467897245	5.50536480587948	4.52495891917659	5.341884993777	5.97036987161162	3.94847631823618	0.0223462276292057	0.959826915177914	0.998431161219273
Merged-chr7-145251142-2	chr7	145250971	145251171	+	821.166626	f1_balb.idr|f1_c57bl6.idr	intron (NR_132644, intron 24 of 24)	intron (NR_132644, intron 24 of 24)	32940.0	NR_132644	233979.0	Mm.102235	NM_146206	ENSMUSG00000048677	Tpcn2	D830047E22Rik|Gm35086	two pore segment channel 2	protein-coding	1.17032394634784	1.53026915182756	1.75754310293431	0.788971858280864	2.80337228905034	0.838039359551697	1.29982065292118	1.04619104063356	1.16599760389947	0.363308523466446	0.858855050154424
Merged-chr2-71843499-4	chr2	71843410	71843610	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008397, intron 20 of 25)	intron (NM_008397, intron 20 of 25)	-29714.0	NM_172665	228026.0	Mm.34411	NM_172665	ENSMUSG00000006494	Pdk1	B830012B01|D530020C15Rik	pyruvate dehydrogenase kinase, isoenzyme 1	protein-coding	5.89109215425938	5.55332738072572	6.20580618823982	6.41338346526676	4.74787762596248	4.4467199328252	5.51785733578946	5.81216260019697	-0.912820901448932	0.00515309644616011	0.0684430086653458
Merged-chr19-8919470-1	chr19	8919370	8919570	+	663.0	f1_c57bl6.idr	promoter-TSS (NM_024256)	promoter-TSS (NM_024256)	-923.0	NM_024256	72727.0	Mm.259	NM_024256	ENSMUSG00000071649	B3gat3	2810405M13Rik	beta-1,3-glucuronyltransferase 3 (glucuronosyltransferase I)	protein-coding	-0.856573398452917	-0.845326538716436	-0.850419824236107	-0.852736118784894	-0.473986530886472	-0.344689557878814	-0.849757022020733	-0.852331722485919	3.07321281652207	0.302799192379468	1
Merged-chr15-101282656-2	chr15	101282556	101282756	+	774.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1645.0	NM_026566	68118.0	Mm.482360	NM_026566	ENSMUSG00000037204	Atg101	9430023L20Rik|AA407441|AU022967	autophagy related 101	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56274711-4	chr17	56274644	56274844	+	810.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_174989, intron 1 of 1)	ID_B1|SINE|B4	2023.0	NM_174989	106759.0	Mm.203952	NM_174989	ENSMUSG00000047123	Ticam1	AW046014|AW547018|TICAM-1|TRIF	toll-like receptor adaptor molecule 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-192137493-2	chr1	192137393	192137593	+	889.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290278, intron 1 of 10)	CpG-848	547.0	NM_001290278	214742.0	Mm.207457	NM_144814	ENSMUSG00000037395	Rcor3	4921514E24Rik|C730034D20Rik|E130101E15Rik	REST corepressor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-5645584-2	chr6	5645484	5645684	+	704.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-80055.0	NM_001191023	13426.0	Mm.20893	NM_010063	ENSMUSG00000029757	Dync1i1	DH IC-1|DHIC-1|DIC|Dncic1|IC74	dynein cytoplasmic 1 intermediate chain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-14843121-2	chr9	14843021	14843221	+	625.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28B|LTR|ERVL	-17089.0	NM_001310734	14608.0	Mm.4672	NM_010287	ENSMUSG00000031932	Gpr83	AW045253|Gir|Gpr72|RP105|RP39|RP82	G protein-coupled receptor 83	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55014601-2	chr14	55014481	55014681	+	858.833374	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_026890)	promoter-TSS (NM_026890)	-873.0	NM_026890	68966.0	Mm.21214	NM_026890	ENSMUSG00000022204	Ngdn	1500001L15Rik|Ngd|neuroguidin	neuroguidin, EIF4E binding protein	protein-coding	1.60276254202788	1.55228032606862	2.04653591294836	0.918329027944032	1.50918560786616	1.94970227160965	0.936547565700647	1.13383054574456	-0.475861218691803	0.707697336776272	0.998431161219273
Merged-chr2-4446786-4	chr2	4446672	4446872	+	980.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 2 of 23)	intron (NM_001177843, intron 2 of 23)	45796.0	NM_001177843	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-80436746-4	chr12	80436677	80436877	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177267)	promoter-TSS (NM_177267)	-176.0	NM_177267	320808.0	Mm.220310	NM_177267	ENSMUSG00000049106	Dcaf5	9430020B07Rik|AI325023|AI430035|AI848110|AW124614|BCRG2|BCRP2|Wdr22	DDB1 and CUL4 associated factor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-25519380-3	chr8	25519283	25519483	+	861.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010206, exon 1 of 18)	5' UTR (NM_010206, exon 1 of 18)	624.0	NM_001079908	14182.0	Mm.265716	NM_010206	ENSMUSG00000031565	Fgfr1	AW208770|Eask|FGFR-I|FLG|Fgfr-1|Flt-2|Hspy|MFR|bFGF-R-1|c-fgr	fibroblast growth factor receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-97963692-3	chr3	97963591	97963791	+	736.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033779, intron 1 of 1)	intron (NM_001033779, intron 1 of 1)	33518.0	NM_001033779	433632.0	Mm.212421	NM_001033779		Gm5544	EG433632	predicted gene 5544	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88623075-2	chr3	88622982	88623182	+	552.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001198913, intron 1 of 21)	intron (NM_001198913, intron 1 of 21)	1688.0	NM_001198912	16800.0	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	0.593357498687445	0.634747700298619	1.30008589244797	1.46542356700266	1.18409350216055	0.637702490725775	1.72052987940479	0.61288891079792	0.268003279919153	0.869020037319114	0.998431161219273
Merged-chr4-107139990-2	chr4	107139890	107140090	+	964.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025617, intron 4 of 4)	intron (NM_025617, intron 4 of 4)	38376.0	NM_025617	66526.0	Mm.246956	NM_025617	ENSMUSG00000028619	Tceanc2	2210010B22Rik|2210012G02Rik|6330404A07Rik|AU015593|Tdeanc2	transcription elongation factor A (SII) N-terminal and central domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-158613748-3	chr2	158613653	158613853	+	923.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009508, intron 1 of 1)	intron (NM_009508, intron 1 of 1)	2995.0	NM_009508	22348.0	Mm.143404	NM_009508	ENSMUSG00000037771	Slc32a1	R75019|VGAT|Viaat	solute carrier family 32 (GABA vesicular transporter), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-98747463-2	chr12	98747363	98747563	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001008506, intron 1 of 14)	intron (NM_001008506, intron 1 of 14)	495.0	NM_029334	75553.0	Mm.25549	NM_029334	ENSMUSG00000021012	Zc3h14	1010001P15Rik|1700016A15Rik|2700069A02Rik|AU014748	zinc finger CCCH type containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-7073500-4	chr15	7073423	7073623	+	629.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56049.0	NM_001113386	16880.0	Mm.149720	NM_013584	ENSMUSG00000054263	Lifr	A230075M04Rik|AW061234|LIF	leukemia inhibitory factor receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-4704316-4	chr11	4704219	4704419	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356391)	promoter-TSS (NM_001356391)	25.0	NM_197979	66152.0	Mm.269736	NM_197979	ENSMUSG00000059534	Uqcr10	1110020P15Rik|AA960494|Ucrc	ubiquinol-cytochrome c reductase, complex III subunit X	protein-coding	2.22534877797615	1.85296293886001	1.9825182709161	2.85314531199192	1.98253616213483	2.25677690159171	3.84407606119019	1.22344925912753	0.831851077842329	0.385959639003312	0.876318810939384
Merged-chr17-45585503-4	chr17	45585400	45585600	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001199116, exon 13 of 13)	3' UTR (NM_001199116, exon 13 of 13)	6893.0	NM_022880	63959.0	Mm.29744	NM_022880	ENSMUSG00000023942	Slc29a1	1200014D21Rik|AA407560|ENT1	solute carrier family 29 (nucleoside transporters), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-16216440-1	chr12	16216340	16216540	+	970.8333130000001	f0_balb.idr	Intergenic	Intergenic	373330.0	NM_015763	14245.0	Mm.153625	NM_015763	ENSMUSG00000020593	Lpin1	Lipin1|fld	lipin 1	protein-coding	2.1630514719067	1.66286537037533	1.30371971532766	1.26313173208566	3.40030069718072	3.52069156119096	3.04593915944521	2.94748523851369	3.41130139712704	0.000136355398726702	0.00395804534013623
Merged-chr8-53498190-2	chr8	53498090	53498290	+	599.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13512.0	NM_001205054	11593.0	Mm.334535	NM_001005847	ENSMUSG00000031521	Aga	AW060726	aspartylglucosaminidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-30986423-4	chr11	30986326	30986526	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026527)	promoter-TSS (NM_026527)	-61.0	NM_001290667	68044.0	Mm.32656	NM_026527	ENSMUSG00000020309	Chac2	-	ChaC, cation transport regulator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-70848585-3	chr9	70848471	70848671	+	877.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001324473, intron 1 of 8)	intron (NM_001324473, intron 1 of 8)	86237.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-101301879-1	chr4	101301779	101301979	+	574.0	f1_balb.idr	Intergenic	Intergenic	-36597.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128704505-8	chr2	128704365	128704565	+	962.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 1 of 18)	B2_Mm2|SINE|B2	5550.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-75835237-1	chr14	75835137	75835337	+	591.0	f0_balb.idr	Intergenic	Intergenic	9727.0	NR_045294	100043189.0	Mm.426329	NR_045294		Gm4285	-	predicted gene 4285	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-21273718-4	chr19	21273615	21273815	+	895.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009551, intron 1 of 5)	intron (NM_009551, intron 1 of 5)	1437.0	NM_009551	22682.0	Mm.292405	NM_009551	ENSMUSG00000024750	Zfand5	2310057A04Rik|5830475F03Rik|AA415485|Za20d2|Zfp216	zinc finger, AN1-type domain 5	protein-coding	0.831879269688771	0.376166960016299	0.941202582812798	0.363469595532875	0.842325706305783	0.377780142105644	0.952574903176055	0.364436949309623	0.041305642444789	0.982260836052292	1
Merged-chr4-134545711-2	chr4	134545611	134545811	+	552.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029100, intron 3 of 11)	intron (NM_029100, intron 3 of 11)	6455.0	NM_029100	74777.0	Mm.29773	NM_029100	ENSMUSG00000050989	Selenon	1110019I12Rik|AI414492|SelN|Sepn1	selenoprotein N	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-126599251-2	chr2	126599151	126599351	+	891.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_008230, intron 9 of 11)	intron (NM_008230, intron 9 of 11)	19427.0	NM_008230	15186.0	Mm.18603	NM_008230	ENSMUSG00000027360	Hdc	AW108189|Hdc-a|Hdc-c|Hdc-e|Hdc-s	histidine decarboxylase	protein-coding	1.81664325148327	1.58875152566494	1.08792117094776	2.53138401348701	1.58248144912227	1.6004556076505	1.34356648925564	2.54526900623132	-0.0156745471398923	0.988743599293691	0.998431161219273
Merged-chr15-59727614-2	chr15	59727514	59727714	+	999.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	67345.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-13368525-2	chr14	13368425	13368625	+	785.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028052, intron 2 of 5)	intron (NM_028052, intron 2 of 5)	83745.0	NM_028052	72003.0	Mm.317515	NM_028052	ENSMUSG00000056296	Synpr	1500003F20Rik|SPO	synaptoporin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-139265816-2	chr4	139265730	139265930	+	879.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037761, intron 4 of 9)	intron (NM_001037761, intron 4 of 9)	44878.0	NR_151463	212555.0	Mm.45131	NM_145384	ENSMUSG00000028744	Pqlc2	BC019216	PQ loop repeat containing 2	protein-coding	1.01180782267751	0.525810675922697	0.516424708238459	1.08562158010582	1.20476995644631	1.30859999950565	0.51850091997926	0.510410882202456	0.628966619921775	0.716351216103786	1
Merged-chr17-29487376-2	chr17	29487276	29487476	+	995.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3669.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-53051652-2	chr2	53051552	53051752	+	777.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 5 of 26)	intron (NM_172409, intron 5 of 26)	139535.0	NM_018785	56194.0	Mm.257474	NM_018785	ENSMUSG00000061136	Prpf40a	2810012K09Rik|FBP-11|FBP11|Fnbp11|Fnbp3	pre-mRNA processing factor 40A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167660800-6	chr2	167660711	167660911	+	942.944458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145538, intron 1 of 5)	intron (NM_145538, intron 1 of 5)	733.0	NM_145538	407243.0	Mm.4863	NM_145538	ENSMUSG00000090213	Tmem189	AI840826|Kua	transmembrane protein 189	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153213574-2	chr2	153213474	153213674	+	887.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11867.0	NM_198617	241732.0	Mm.277243	NM_198617	ENSMUSG00000074671	Tspyl3	AW212607|Gm36	TSPY-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-13276028-2	chr2	13275928	13276128	+	940.25	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001081084)	TTS (NM_001081084)	-4613.0	NM_009105	20163.0	Mm.905	NM_009105	ENSMUSG00000026727	Rsu1	RsuI|rsp-1	Ras suppressor protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-69890288-1	chr12	69890188	69890388	+	566.0	f0_balb.idr	intron (NM_201519, intron 1 of 30)	L2a|LINE|L2	-2817.0	NM_178628	73991.0	Mm.474462	NM_178628	ENSMUSG00000021066	Atl1	4930435M24Rik|Adfsp|Fsp1|Spg3|Spg3a	atlastin GTPase 1	protein-coding	-1.20406370813143	-1.56956373024278	-1.57884638916872	-1.58647144159385	-1.598104728449	-1.56755213932999	-1.57674499865798	-1.58510656085539	-1.70745470802464	0.626337835847419	1
Merged-chr11-98053383-2	chr11	98053283	98053483	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146028)	promoter-TSS (NM_146028)	79.0	NM_146028	217154.0	Mm.181008	NM_146028	ENSMUSG00000017400	Stac2	24b2|24b2/STAC2|AW240854	SH3 and cysteine rich domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-11743103-2	chr1	11743003	11743203	+	580.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001160369, intron 7 of 13)	intron (NM_001160369, intron 7 of 13)	328998.0	NM_001160371	320492.0	Mm.52021	NM_177173	ENSMUSG00000057715	A830018L16Rik	-	RIKEN cDNA A830018L16 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-107204335-3	chr3	107204266	107204466	+	812.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F2|LTR|ERVL-MaLR	17366.0	NM_001111143	229697.0	Mm.297051	NM_001111143	ENSMUSG00000046213	Cym	Gm131	chymosin	protein-coding	4.55792582961187	4.93221922791401	4.90358971251265	4.99175517440055	4.34289222838941	5.48551057374343	3.87150224080661	3.97866352661419	-0.337255880708092	0.426637080816287	0.902113777572219
Merged-chr6-83774994-3	chr6	83774886	83775086	+	893.288879	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009357, intron 2 of 5)	intron (NM_009357, intron 2 of 5)	826.0	NM_009357	21766.0	Mm.28371	NM_009357	ENSMUSG00000014748	Tex261	3110001O07Rik|AA409339|AI480706|AL033351|TEG-261	testis expressed gene 261	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-16011475-2	chr4	16011375	16011575	+	896.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355616, intron 1 of 5)	intron (NM_001355616, intron 1 of 5)	2363.0	NM_001355615	209212.0	Mm.46455	NM_145950	ENSMUSG00000041153	Osgin2	BC010311|C230027H09Rik	oxidative stress induced growth inhibitor family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125158790-2	chr6	125158690	125158890	+	592.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039669, intron 8 of 9)	intron (NM_001039669, intron 8 of 9)	6983.0	NM_008084	14433.0	Mm.304088	NM_008084	ENSMUSG00000057666	Gapdh	Gapd	glyceraldehyde-3-phosphate dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-17878628-4	chr14	17878531	17878731	+	987.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113417, intron 2 of 9)	intron (NM_001113417, intron 2 of 9)	-103013.0	NM_009380	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131022762-2	chr1	131022662	131022862	+	643.083313	f1_balb.idr|f1_c57bl6.idr	intron (NM_010548, intron 4 of 4)	intron (NM_010548, intron 4 of 4)	2917.0	NM_010548	16153.0	Mm.874	NM_010548	ENSMUSG00000016529	Il10	CSIF|Il-10	interleukin 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3789884-3	chr4	3789864	3790064	+	638.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010747, exon 13 of 13)	3' UTR (NM_010747, exon 13 of 13)	45691.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-163608761-2	chr2	163608661	163608861	+	660.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_131225, intron 2 of 3)	B1_Mur2|SINE|Alu	1549.0	NM_001305803	76080.0	Mm.89828	NM_029512	ENSMUSG00000017679	Ttpal	3110080A02Rik|5830472M02Rik	tocopherol (alpha) transfer protein-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-34500962-4	chr19	34500868	34501068	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111100, intron 7 of 9)	RLTR11A|LTR|ERVK	-25833.0	NM_009890	12642.0	Mm.30824	NM_009890	ENSMUSG00000050370	Ch25h	AI462618|m25OH	cholesterol 25-hydroxylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-4755760-2	chr5	4755660	4755860	+	669.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_021457, exon 1 of 1)	exon (NM_021457, exon 1 of 1)	2456.0	NM_021457	14362.0	Mm.246003	NM_021457	ENSMUSG00000044674	Fzd1	AW227548|FZ-1|Fz1	frizzled class receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-130943400-4	chr7	130943290	130943490	+	999.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019564, intron 1 of 8)	intron (NM_019564, intron 1 of 8)	7187.0	NM_019564	56213.0	Mm.30156	NM_019564	ENSMUSG00000006205	Htra1	AI429470|HTRA|L56|Prss11|RSPP11	HtrA serine peptidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-52451312-3	chr14	52451217	52451417	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_020514)	TTS (NM_020514)	924.0	NM_020514	57271.0	Mm.88824	NM_020514	ENSMUSG00000035626	Olfr1509	MOR244-3|Mor83|Or83	olfactory receptor 1509	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-91063331-4	chr1	91063233	91063433	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008515, intron 1 of 22)	intron (NM_008515, intron 1 of 22)	9889.0	NM_001310732	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-5785911-4	chr11	5785804	5786004	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2579.0	NM_001146309	13169.0	Mm.256925	NM_013810	ENSMUSG00000020476	Dbnl	Abp1|SH3P7|mAbp1	drebrin-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-29976711-2	chr14	29976611	29976811	+	926.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1626.0	NM_027493	56249.0	Mm.215110	NM_027493	ENSMUSG00000015971	Actr8	5730542K05Rik|ARP8	ARP8 actin-related protein 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-11315372-2	chr16	11315272	11315472	+	721.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011608, intron 2 of 2)	intron (NM_011608, intron 2 of 2)	1563.0	NM_011608	21935.0	Mm.12935	NM_011608	ENSMUSG00000022496	Tnfrsf17	BCM|BCMA|Tnfrsf13|Tnfrsf13a	tumor necrosis factor receptor superfamily, member 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-30823667-3	chr3	30823573	30823773	+	955.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	30797.0	NM_001357528	69276.0	Mm.26017	NM_027016	ENSMUSG00000027706	Sec62	3100002M17Rik|AI844545|AW545092|Dtrp1|HTP1|Tloc1	SEC62 homolog (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-68233169-3	chr8	68233060	68233260	+	725.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43368.0	NM_028182	72281.0	Mm.40974	NM_028182	ENSMUSG00000053886	Sh2d4a	2210402M20Rik|SH2A	SH2 domain containing 4A	protein-coding	3.01827901389633	3.49191396127372	2.17163877653041	3.18893185251816	2.8535274319463	4.5725376430093	2.86983808469954	3.4526485847091	0.922321233384872	0.170891216228455	0.6384739917923
Merged-chr11-100324437-2	chr11	100324337	100324537	+	832.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	4488.0	NM_011508	20918.0	Mm.13886	NM_011508	ENSMUSG00000035530	Eif1	Sui1-rs1	eukaryotic translation initiation factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-67405790-1	chr18	67405690	67405890	+	589.0	f1_balb.idr	intron (NM_027130, intron 16 of 16)	B2_Mm2|SINE|B2	15059.0	NM_026473	67951.0	Mm.181860	NM_026473	ENSMUSG00000001473	Tubb6	2310057H16Rik|BB220206	tubulin, beta 6 class V	protein-coding	-0.128694717008494	-0.118270133208907	-0.121727677969119	-0.124367152984379	0.283877175747005	0.194788746763927	0.373734236102573	-0.123907810561819	3.79071251079823	0.102190120894261	1
Merged-chr12-113031086-2	chr12	113030986	113031186	+	879.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081170, intron 1 of 23)	intron (NM_001081170, intron 1 of 23)	16578.0	NM_001291444	217893.0	Mm.35754	NM_198165	ENSMUSG00000021143	Pacs2	6720425G15Rik|AW208651|AW489976|E230011J22|Pacs1l|mKIAA0602	phosphofurin acidic cluster sorting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-78512189-4	chr11	78512103	78512303	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026389)	promoter-TSS (NM_026389)	-35.0	NM_199199	195040.0	Mm.383431	NM_199199	ENSMUSG00000051232	Tmem199	AI316787|AI848469|R74819	transmembrane protein 199	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-19952561-4	chr5	19952453	19952653	+	978.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015823, intron 1 of 21)	intron (NM_015823, intron 1 of 21)	45035.0	NM_015823	50791.0	Mm.332231	NM_015823	ENSMUSG00000040003	Magi2	AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705	membrane associated guanylate kinase, WW and PDZ domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-75499506-4	chr10	75499410	75499610	+	860.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17871.0	NM_175133	68778.0	Mm.29382	NM_175133	ENSMUSG00000033416	Gucd1	1110038D17Rik	guanylyl cyclase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-112238013-3	chr7	112237899	112238099	+	893.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001193305, intron 2 of 25)	intron (NM_001193305, intron 2 of 25)	12163.0	NM_001193305	320878.0	Mm.52312	NM_177282	ENSMUSG00000038244	Mical2	5330438E18Rik|9530064J02|MICAL-2|mKIAA0750	microtubule associated monooxygenase, calponin and LIM domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-43589198-4	chr1	43589094	43589294	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-141408.0	NM_024283	78896.0	Mm.50109	NM_024283	ENSMUSG00000026051	1500015O10Rik	Ecrg4	RIKEN cDNA 1500015O10 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-15957464-2	chr7	15957364	15957564	+	583.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153068, intron 4 of 5)	CpG	10071.0	NM_153068	259300.0	Mm.138215	NM_153068	ENSMUSG00000074364	Ehd2	BC027084|C130052H20Rik	EH-domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-6435047-1	chr18	6434947	6435147	+	583.0	f1_balb.idr	TTS (NM_027497)	TTS (NM_027497)	55599.0	NR_035446	100316773.0		NR_035446	ENSMUSG00000084514	Mir1893	Mirn1893|mmu-mir-1893	microRNA 1893	ncRNA	0.377281121597698	0.242658089041343	0.234791620459694	0.561753754273916	0.928728497205419	0.244422538366245	1.15926777077229	0.229748341479594	2.17442736404998	0.259605788722338	1
Merged-chr11-104432019-4	chr11	104431933	104432133	+	781.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359634, intron 2 of 14)	intron (NM_001359634, intron 2 of 14)	10258.0	NM_001081045	76719.0	Mm.136418	NM_001081045	ENSMUSG00000018412	Kansl1	1700081L11Rik|9430041J06Rik|mKIAA1267	KAT8 regulatory NSL complex subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-121313490-1	chr14	121313390	121313590	+	724.0	f1_c57bl6.idr	intron (NM_145465, intron 2 of 10)	intron (NM_145465, intron 2 of 10)	64784.0	NR_155502	320268.0	Mm.435974	NR_155502		B930095G15Rik	-	RIKEN cDNA B930095G15 gene	ncRNA	-0.537420008187142	-0.526012484097918	-0.529754989517255	0.0948060579263241	-0.0570759593016932	-0.525168184633122	-0.528929981754154	-0.532135393451812	-0.511960813024051	0.855730970216827	1
Merged-chr10-75483263-2	chr10	75483163	75483363	+	684.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33753.0	NR_045841	71125.0	Mm.399516	NR_045841		4933407G14Rik	-	RIKEN cDNA 4933407G14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106777751-2	chr11	106777651	106777851	+	643.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_148431, intron 1 of 7)	B1F|SINE|Alu	1715.0	NM_001353435	50776.0	Mm.859	NM_015810	ENSMUSG00000020718	Polg2	mtPolB|p55|polG-beta	polymerase (DNA directed), gamma 2, accessory subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-124613635-4	chr2	124613559	124613759	+	989.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291000, intron 1 of 18)	intron (NM_001291000, intron 1 of 18)	3363.0	NM_172537	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-23193695-4	chr17	23193603	23193803	+	946.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009555)	promoter-TSS (NM_009555)	-451.0	NM_001357697	22700.0	Mm.437934	NM_009555	ENSMUSG00000002617	Zfp40	CTfin12|NTfin12|Zfp-40	zinc finger protein 40	protein-coding	3.16037685030992	2.91455812326828	4.5406376714388	3.78858920184509	4.52569749123397	5.04213411884218	4.37451183708506	4.80025202609216	1.24620572508326	0.00876793755851984	0.098994085470942
Merged-chr3-3001947-2	chr3	3001847	3002047	+	779.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-506083.0	NM_013920	30942.0	Mm.330897	NM_013920	ENSMUSG00000017688	Hnf4g	NR2A2	hepatocyte nuclear factor 4, gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-17695537-2	chr13	17695443	17695643	+	1000.0	f0_balb.idr|f1_balb.idr	promoter-TSS (NM_138654)	promoter-TSS (NM_138654)	130.0	NM_025479	66308.0	Mm.291109	NM_025479	ENSMUSG00000012429	Mplkip	2810021B07Rik|C330007M08Rik|Ttdn1	M-phase specific PLK1 intereacting protein	protein-coding	3.49887221001057	3.76446912668851	3.44340848615056	3.43774459250224	4.30220617934093	4.63226102033613	4.44524048014776	4.79629968095757	1.38397536934484	0.00133798263342768	0.0246465439649929
Merged-chr8-84975606-4	chr8	84975504	84975704	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011563)	TTS (NM_011563)	3144.0	NM_008416	16477.0	Mm.1167	NM_008416	ENSMUSG00000052837	Junb	-	jun B proto-oncogene	protein-coding	-1.06997269762433	-1.30473905204845	-1.3145270772132	-1.32256725251374	-1.06385251204029	-1.30261794616352	-1.3123112828633	-1.32112806497905	0.0394047164033882	0.991001358494878	1
Merged-chr4-53129167-2	chr4	53129067	53129267	+	560.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 3 of 49)	B3|SINE|B2	30728.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-57691682-4	chr6	57691548	57691748	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025574, intron 1 of 1)	intron (NM_025574, intron 1 of 1)	430.0	NM_025574	66459.0	Mm.44201	NM_025574	ENSMUSG00000043162	Pyurf	2610022G08Rik|AI847956|Prey	Pigy upstream reading frame	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-94987645-2	chr11	94987545	94987745	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3567.0	NM_172261	217124.0	Mm.229087	NM_172261	ENSMUSG00000038976	Ppp1r9b	SPL|Spn	protein phosphatase 1, regulatory subunit 9B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-60379760-4	chr10	60379694	60379894	+	869.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252635, intron 33 of 68)	intron (NM_001252635, intron 33 of 68)	-19932.0	NM_001164374	100302688.0	Mm.444135	NM_001164374	ENSMUSG00000090439	Gm17455	-	predicted gene, 17455	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-79812221-4	chr5	79812148	79812348	+	872.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MURVY-int|LTR|ERV1	-1208323.0	NM_001347367	319387.0	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-7128702-2	chr15	7128602	7128802	+	624.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113386)	promoter-TSS (NM_001113386)	-870.0	NM_001113386	16880.0	Mm.149720	NM_013584	ENSMUSG00000054263	Lifr	A230075M04Rik|AW061234|LIF	leukemia inhibitory factor receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111575394-6	chr12	111575288	111575488	+	891.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045295)	promoter-TSS (NR_045295)	878.0	NM_022801	17169.0	Mm.260504	NM_021516	ENSMUSG00000007411	Mark3	1600015G02Rik|A430080F22Rik|C-TAK1|ETK-1|ETK1|Emk2|MPK10	MAP/microtubule affinity regulating kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25077093-4	chr7	25077006	25077206	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001168506, exon 2 of 3)	5' UTR (NM_001168506, exon 2 of 3)	299.0	NM_175477	232976.0	Mm.41568	NM_175477	ENSMUSG00000045252	Zfp574	A630056B21Rik|Znf574	zinc finger protein 574	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32594283-2	chr2	32594183	32594383	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001276425, exon 4 of 6)	exon (NM_001276425, exon 4 of 6)	-5426.0	NM_001025311	50935.0	Mm.88831	NM_016973	ENSMUSG00000026811	St6galnac6	ST6GalNAcVI|Siat7f	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-88349384-3	chr17	88349317	88349517	+	872.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-91287.0	NM_001355743	14236.0	Mm.112824	NM_180974	ENSMUSG00000034998	Foxn2	3230402J05Rik|6030465J18Rik|Fkh19|Foxn1|HTLF	forkhead box N2	protein-coding	0.746634397182051	0.996368309392094	0.951784281654269	0.485710645706892	1.13830770987071	0.50146903181474	0.4935491362478	0.922899367347495	-0.0420884644588376	0.979855414977081	1
Merged-chr1-64614633-1	chr1	64614533	64614733	+	544.0	f1_c57bl6.idr	intron (NM_025964, intron 2 of 2)	intron (NM_025964, intron 2 of 2)	2535.0	NM_025964	67099.0	Mm.46394	NM_025964	ENSMUSG00000025956	Mettl21a	2310038H17Rik|AI464204|Fam119a	methyltransferase like 21A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-79750398-4	chr12	79750269	79750469	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 8 of 10)	intron (NM_009014, intron 8 of 10)	174364.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-62686899-2	chr4	62686800	62687000	+	626.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_001310706, intron 1 of 6)	intron (NM_001310706, intron 1 of 6)	12926.0	NM_001310706	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	2.14752680037761	0.860935511443991	1.28922070903874	1.05710312664495	1.01252708449478	0.865622345277965	2.38104847290807	1.56178021469731	0.456735811161238	0.727786165517599	0.998431161219273
Merged-chr1-93446182-4	chr1	93446042	93446242	+	992.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001301364)	promoter-TSS (NM_001301364)	-441.0	NM_001301364	110611.0	Mm.30012	NM_133808	ENSMUSG00000034088	Hdlbp	1110005P14Rik|AA960365|AI118566|D1Ertd101e	high density lipoprotein (HDL) binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-62111061-4	chr10	62110964	62111164	+	988.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027251)	promoter-TSS (NM_027251)	-14.0	NM_001358252	69894.0	Mm.294126	NM_027251	ENSMUSG00000020083	Fam241b	2010107G23Rik|AA545165	family with sequence similarity 241, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-92019522-4	chr16	92019412	92019612	+	983.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	-38810.0	NM_017391	53881.0	Mm.217354	NM_017391	ENSMUSG00000089774	Slc5a3	AA623876|BF642829|Smit1	solute carrier family 5 (inositol transporters), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-117136195-4	chr4	117136091	117136291	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-2228.0	NM_001313916	12795.0	Mm.259022	NM_013807	ENSMUSG00000028680	Plk3	Cnk|Fnk|PLK-3|PRK	polo like kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-149784639-2	chr4	149784539	149784739	+	611.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10372.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-58696261-4	chr1	58696142	58696342	+	747.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175370)	promoter-TSS (NM_175370)	-253.0	NM_175370	108812.0	Mm.442063	NM_175370	ENSMUSG00000047528	Als2cr12	4933405P16Rik|4933425F06Rik	amyotrophic lateral sclerosis 2 chromosome region 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127928807-2	chr7	127928707	127928907	+	556.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133351, intron 2 of 5)	intron (NM_133351, intron 2 of 5)	1306.0	NM_133351	76560.0	Mm.5875	NM_133351	ENSMUSG00000030800	Prss8	2410039E18Rik|AI313909|C79772|CAP1|fr|mCAP1	protease, serine 8 (prostasin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135358870-2	chr4	135358770	135358970	+	664.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5656.0	NM_001130477	51796.0	Mm.1963	NM_016799	ENSMUSG00000028809	Srrm1	AA407769|POP101|Srm160	serine/arginine repetitive matrix 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-105718520-2	chr3	105718420	105718620	+	818.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_175398, exon 2 of 2)	3' UTR (NM_175398, exon 2 of 2)	13062.0	NM_001163356	109050.0	Mm.212591	NM_175398	ENSMUSG00000048458	Fam212b	6530418L21Rik|inka2	family with sequence similarity 212, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115227840-1	chr11	115227740	115227940	+	569.0	f1_c57bl6.idr	intron (NM_001033393, intron 8 of 9)	ID_B1|SINE|B4	39403.0	NM_010350	14813.0	Mm.39090	NM_010350	ENSMUSG00000020734	Grin2c	GluN2C|NMDAR2C|NR2C	glutamate receptor, ionotropic, NMDA2C (epsilon 3)	protein-coding	-0.112524986427619	-0.549532281574571	-0.552813807815392	-0.555334781178726	-0.420993529112407	-0.548790407057139	-0.111397277437275	-0.554895056024722	0.314737548581516	0.906160540542137	1
Merged-chr4-59452688-4	chr4	59452585	59452785	+	983.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR40|LTR|ERVK	-14052.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-92230398-2	chr4	92230298	92230498	+	632.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-83177.0	NM_027034	69314.0	Mm.55891	NM_027034	ENSMUSG00000028533	Izumo3	1700011H22Rik	IZUMO family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-125578359-2	chr7	125578259	125578459	+	575.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001008700, exon 11 of 11)	3' UTR (NM_001008700, exon 11 of 11)	-25070.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	0.18425578854357	0.433003513587777	-0.172848657155352	-0.176376745437914	-0.181354136633182	-0.16723477359116	-0.171839172180639	0.245466750369019	-1.27310615215473	0.594402923975482	1
Merged-chr15-31565923-3	chr15	31565811	31566011	+	675.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2922.0	NM_181588	69574.0	Mm.28108	NM_181588	ENSMUSG00000022235	Cmbl	2310016A09Rik	carboxymethylenebutenolidase-like (Pseudomonas)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71351965-1	chr8	71351865	71352065	+	626.0	f1_balb.idr	exon (NM_001142323, exon 25 of 39)	exon (NM_001142323, exon 25 of 39)	-14883.0	NM_001145780	67023.0	Mm.41890	NM_025917	ENSMUSG00000002395	Use1	2010315L10Rik|5730403H22Rik|AV002165|D12|Ed2|Q-snare|p31	unconventional SNARE in the ER 1 homolog (S. cerevisiae)	protein-coding	0.312579212671094	0.0380440967879797	0.0311313832287881	0.0257605636964569	0.547139364265124	0.0395950059364826	0.0326606643520147	1.05180368721506	2.71471171112691	0.213945004535912	1
Merged-chr5-140389312-4	chr5	140389195	140389395	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172277)	promoter-TSS (NM_172277)	13.0	NM_172277	231834.0	Mm.27098	NM_172277	ENSMUSG00000029560	Snx8	B130023O14Rik	sorting nexin 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-57881003-4	chr15	57880907	57881107	+	791.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024207, intron 2 of 7)	intron (NM_024207, intron 2 of 7)	11411.0	NM_024207	67819.0	Mm.289387	NM_024207	ENSMUSG00000022365	Derl1	1110021N07Rik|AI195141|AW551338|Derlin-1	Der1-like domain family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-79130799-4	chr12	79130678	79130878	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009705)	promoter-TSS (NM_009705)	-10.0	NM_009705	11847.0	Mm.3506	NM_009705	ENSMUSG00000021125	Arg2	AII|AU022422	arginase type II	protein-coding	4.98462035532033	4.94629930810359	5.04271278160498	4.56974623022221	5.21711448422016	5.79301981263521	5.60930626180888	5.72224816225265	0.813266921794832	0.00623125406071526	0.0786422716204015
Merged-chr2-150896045-4	chr2	150895926	150896126	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151505, intron 1 of 12)	MLT1A0-int|LTR|ERVL-MaLR	8705.0	NM_024465	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-59024736-2	chr16	59024636	59024836	+	671.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2B|LINE|L1	3169.0	NM_146321	258318.0	Mm.377434	NM_146321	ENSMUSG00000047960	Olfr186	MOR183-9	olfactory receptor 186	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-3177400-2	chr11	3177278	3177478	+	1000.0	f0_balb.idr|f1_balb.idr	intron (NM_030207, intron 6 of 32)	intron (NM_030207, intron 6 of 32)	16085.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-94721956-2	chr13	94721856	94722056	+	947.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66987.0	NM_009321	21371.0	Mm.379025	NM_009321	ENSMUSG00000042043	Tbca	Tbca13	tubulin cofactor A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-20545552-2	chr9	20545452	20545652	+	862.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24133.0	NM_001082485	77519.0	Mm.431849	NM_001082485	ENSMUSG00000060510	Zfp266	5330440G10Rik|5730601F06Rik|AW552317	zinc finger protein 266	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28382064-4	chr7	28381962	28382162	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2834.0	NM_011756	22695.0	Mm.389856	NM_011756	ENSMUSG00000044786	Zfp36	Gos24|Nup475|TIS11D|TISII|Tis11|Ttp|Zfp-36	zinc finger protein 36	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123153042-4	chr5	123152941	123153141	+	927.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040398, intron 7 of 16)	MER3|DNA|hAT-Charlie	10848.0	NM_001040398	208043.0	Mm.250391	NM_177581	ENSMUSG00000038384	Setd1b	AA516740|BC035291|KMT2G|mKIAA1076	SET domain containing 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-88500668-1	chr5	88500568	88500768	+	642.0	f0_balb.idr	intron (NM_017468, intron 9 of 9)	intron (NM_017468, intron 9 of 9)	12693.0	NM_017468	13801.0	Mm.8014	NM_017468	ENSMUSG00000029286	Enam	abte	enamelin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-96278963-4	chr11	96278857	96279057	+	715.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2948.0	NM_010461	15416.0	Mm.4822	NM_010461	ENSMUSG00000056648	Hoxb8	Hox-2.4	homeobox B8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-26862375-3	chr10	26862278	26862478	+	716.266663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176837, intron 5 of 14)	L1MC5|LINE|L1	89866.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117142145-2	chr10	117142045	117142245	+	625.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177798, intron 1 of 9)	intron (NM_177798, intron 1 of 9)	6329.0	NM_177798	327826.0	Mm.135965	NM_177798	ENSMUSG00000020170	Frs2	4732458E18|C330018A15Rik|Frs2alpha|SNT1	fibroblast growth factor receptor substrate 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96499760-4	chr3	96499698	96499898	+	884.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25387.0	NM_027126	69585.0	Mm.171314	NM_027126	ENSMUSG00000038403	Hfe2	2310035L15Rik|5230400G09Rik|AI414844|AI789733|DL-M|HJV|Rgmc|hemojuvelin	hemochromatosis type 2 (juvenile)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-151818878-2	chr4	151818778	151818978	+	580.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001195565, intron 3 of 3)	intron (NM_001195565, intron 3 of 3)	42890.0	NM_001081557	100072.0	Mm.318846	NM_001081557	ENSMUSG00000014592	Camta1	1810059M14Rik|2310058O09Rik|AI316882|AW987475|mKIAA0833	calmodulin binding transcription activator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-93300783-4	chr13	93300706	93300906	+	947.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2951.0	NM_147176	26556.0	Mm.37533	NM_011982	ENSMUSG00000007617	Homer1	PSD-Zip45|SYN47|Ves-1|homer-1|vesl-1	homer scaffolding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-111471334-4	chr10	111471219	111471419	+	966.94165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-1908.0	NM_001358932	53605.0	Mm.290407	NM_015781	ENSMUSG00000058799	Nap1l1	AA407126|AI256722|D10Ertd68e|NAP-1	nucleosome assembly protein 1-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-12535741-4	chr11	12535646	12535846	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70786.0	NM_001282993	12808.0	Mm.22847	NM_172496	ENSMUSG00000020173	Cobl	-	cordon-bleu WH2 repeat	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46655024-2	chr19	46654924	46655124	+	574.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001177812, exon 5 of 5)	3' UTR (NM_001177812, exon 5 of 5)	17976.0	NM_007809	13074.0	Mm.1262	NM_007809	ENSMUSG00000003555	Cyp17a1	Cyp17|p450c17	cytochrome P450, family 17, subfamily a, polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19298317-2	chr7	19298217	19298417	+	708.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	7248.0	NM_001025364	20167.0	Mm.24142	NM_013648	ENSMUSG00000030401	Rtn2	MMS10-P|Ms10p|NSPLI|Nspl1	reticulon 2 (Z-band associated protein)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102745036-4	chr12	102744908	102745108	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001324515, exon 2 of 2)	exon (NM_001324515, exon 2 of 2)	1248.0	NM_177140	320351.0	Mm.86546	NM_177140	ENSMUSG00000046675	Tmem251	D230037D09Rik	transmembrane protein 251	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-145179818-2	chr5	145179829	145180029	+	728.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291249, intron 7 of 7)	intron (NM_001291249, intron 7 of 7)	11663.0	NM_020582	57423.0	Mm.133551	NM_020582	ENSMUSG00000038690	Atp5j2	1110019H14Rik	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F2	protein-coding	0.992766443135775	0.843555580825776	2.76972552288282	1.70419061316579	1.35151579025838	1.13319012593729	0.824761308837087	1.71497463568582	-1.49925710028903	0.240237850000228	0.736569477638593
Merged-chr8-105413025-2	chr8	105412925	105413125	+	553.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001170788)	promoter-TSS (NM_001170788)	477.0	NM_177791	279499.0	Mm.67628	NM_177791	ENSMUSG00000051648	Kctd19	4922504H04Rik	potassium channel tetramerisation domain containing 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126872755-4	chr8	126872665	126872865	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1G|LTR|ERVL-MaLR	23745.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128870916-4	chr2	128870826	128871026	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024237, intron 1 of 7)	intron (NM_024237, intron 1 of 7)	6994.0	NM_024237	70370.0	Mm.5107	NM_024237	ENSMUSG00000027386	Fbln7	1600015H20Rik|AI464334|TM14	fibulin 7	protein-coding	4.89466160865322	4.78712555803315	4.93954600831457	4.81560986281824	4.80390478031821	4.95835446227831	4.46282887950195	4.94788844850944	-0.0661351512447262	0.841057465836941	0.998431161219273
Merged-chr8-128551568-4	chr8	128551484	128551684	+	706.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-134070.0	NM_010578	16412.0	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	3.84627124313928	3.28527220399251	2.81004199674517	3.182709165123	3.77962675945738	3.41320635724145	3.39442609782858	3.73146272215729	0.385738038943657	0.487524408374558	0.932902141745994
Merged-chr5-31254619-2	chr5	31254519	31254719	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026298, intron 43 of 47)	intron (NM_026298, intron 43 of 47)	2913.0	NM_027221	69815.0	Mm.389609	NM_027221	ENSMUSG00000029149	Krtcap3	2010001C09Rik|AW321088|Kcp3	keratinocyte associated protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128333190-1	chr2	128333090	128333290	+	1000.0	f1_c57bl6.idr	intron (NR_028590, intron 1 of 2)	B4|SINE|B4	96161.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-90236154-2	chr9	90236054	90236254	+	590.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 3 of 12)	Tigger13a|DNA|TcMar-Tigger	34615.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-160086188-3	chr2	160086052	160086252	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	69499.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	0.68191694591244	0.151488339272414	0.145769972961679	0.662369913685352	0.277922389800427	0.152778000110662	0.147030812578495	0.669243684901714	-0.725667534129601	0.720480797657005	1
Merged-chr19-9931653-2	chr19	9931548	9931748	+	1000.0	f0_c57.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-32115.0	NM_016692	16319.0	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	4.52420855133154	4.34732647840409	4.1463207950146	4.0942287313046	4.13747993803407	4.70112611647571	3.63435242026258	4.79592835299644	0.132272263325685	0.756561426782043	0.998431161219273
Merged-chr4-34386558-4	chr4	34386451	34386651	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-164064.0	NM_001007589	433693.0	Mm.389532	NM_026019	ENSMUSG00000028291	Akirin2	2700059D21Rik|AA114675|AA522011|AU019887|Akirin-2	akirin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-101653624-4	chr4	101653536	101653736	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175036, intron 2 of 3)	MTD|LTR|ERVL-MaLR	5853.0	NM_175036	230514.0	Mm.4756	NM_175036	ENSMUSG00000035212	Leprot	LEPR|OB-RGRP|Obrgrp|VPS55	leptin receptor overlapping transcript	protein-coding	-0.931523928027181	-1.04752078468025	-1.05827297226483	-1.06352491065276	-0.808670269021613	-1.04519074077685	-1.05583891267692	-0.770661429139923	1.59684673343255	0.596139227211169	1
Merged-chr7-4355568-1	chr7	4355468	4355668	+	554.0	f1_balb.idr	Intergenic	Intergenic	17844.0	NM_010746	17086.0	Mm.240231	NM_010746	ENSMUSG00000062524	Ncr1	Ly94|NKp46	natural cytotoxicity triggering receptor 1	protein-coding	0.979347020779775	1.53651115220473	1.59029717614518	1.31344716403308	0.985300874511518	1.54929192926616	1.36461393930826	0.831452779418064	-0.633371124277423	0.624700786973036	0.980870708702995
Merged-chr8-41375689-4	chr8	41375546	41375746	+	775.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019734)	promoter-TSS (NM_019734)	-949.0	NM_019734	11886.0	Mm.22547	NM_019734	ENSMUSG00000031591	Asah1	2310081N20Rik|AC|Asah	N-acylsphingosine amidohydrolase 1	protein-coding	0.697297257179754	0.304032349457369	0.295499558512694	0.877486640795427	1.34867026761296	0.305944294476915	0.297388816217851	0.476769615377984	0.687816464884159	0.711937169480096	1
Merged-chr8-25598346-2	chr8	25598246	25598446	+	920.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173012)	promoter-TSS (NM_173012)	-859.0	NM_173012	270035.0	Mm.268349	NM_173012	ENSMUSG00000037363	Letm2	6030453H13|D030041N04Rik	leucine zipper-EF-hand containing transmembrane protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-90879346-2	chr5	90879202	90879402	+	701.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11943.0	NM_008176	14825.0	Mm.21013	NM_008176	ENSMUSG00000029380	Cxcl1	Fsp|Gro1|KC|Mgsa|N51|Scyb1|gro	chemokine (C-X-C motif) ligand 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-83999079-2	chr8	83999002	83999202	+	646.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081415, exon 2 of 5)	exon (NM_001081415, exon 2 of 5)	1430.0	NM_001081415	666704.0	Mm.298091	NM_001081415	ENSMUSG00000079003	Samd1	AA589507	sterile alpha motif domain containing 1	protein-coding	-0.884024899365432	-0.826932263076824	-1.01615072902461	-1.01949197617704	-1.02221319010011	-1.00239340140276	-1.0135910621029	-0.599614673521534	0.617343506068951	0.83689010780587	1
Merged-chr16-67647085-3	chr16	67646961	67647161	+	770.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-26153.0	NM_178721	239857.0	Mm.394300	NM_178721	ENSMUSG00000064115	Cadm2	2900078E11Rik|9330131D06|A830029E02Rik|Igdf4d|Igsf4d|NECL3|SynCAM 2|SynCAM2	cell adhesion molecule 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-24630794-4	chr10	24630692	24630892	+	868.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35350.0	NM_010217	14219.0	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-33213960-4	chr14	33213851	33214051	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2872.0	NM_153800	239027.0	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-14848984-3	chr3	14848846	14849046	+	729.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14592.0	NM_007606	12350.0	Mm.300	NM_007606	ENSMUSG00000027559	Car3	BB219044|Ca3|Car-3	carbonic anhydrase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33902102-4	chr16	33901999	33902199	+	958.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 7 of 14)	intron (NM_001145884, intron 7 of 14)	64939.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-41072874-4	chr9	41072748	41072948	+	954.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176860, intron 1 of 13)	intron (NM_176860, intron 1 of 13)	6658.0	NM_001357412	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	2.17002144274026	1.75483267744857	2.82571026164013	2.07851833957944	1.98909136165379	1.94385777008715	1.51356741060105	1.82593192501246	-1.15904822794078	0.217742859401176	0.708757142456676
Merged-chr4-130696539-2	chr4	130696439	130696639	+	657.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356566, intron 2 of 17)	RLTR16B_MM|LTR|ERVK	33182.0	NM_001356564	80912.0	Mm.440206	NM_030722	ENSMUSG00000028580	Pum1	AA517475|Pumm|mKIAA0099	pumilio RNA-binding family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-24155086-1	chr6	24154986	24155186	+	680.0	f0_balb.idr	intron (NM_019481, intron 1 of 14)	B4A|SINE|B4	13006.0	NM_019481	55961.0	Mm.19299	NM_019481	ENSMUSG00000029700	Slc13a1	AI314066|AI987826|NaSi-1|Nas1	solute carrier family 13 (sodium/sulfate symporters), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-33033386-4	chr5	33033303	33033503	+	881.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14587.0	NM_011738	22629.0	Mm.332314	NM_011738	ENSMUSG00000018965	Ywhah	-	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-89066992-1	chr9	89066892	89067092	+	594.0	f0_balb.idr	Intergenic	Intergenic	25843.0	NM_001170884	666747.0	Mm.425592	NM_001170884	ENSMUSG00000079162	Trim43b	EG666747|Gm8269	tripartite motif-containing 43B	protein-coding	0.660775329888613	0.722115176545247	0.702773507569671	0.687371718291929	1.20898438351814	1.55129595489595	2.10049584215159	2.02064197447597	5.26099961903655	0.000412772432093411	0.00959775899274563
Merged-chr10-66864562-4	chr10	66864474	66864674	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55810.0	NR_138560	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129303398-2	chr2	129303298	129303498	+	952.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010554, intron 5 of 6)	(TC)n|Simple_repeat|Simple_repeat	6028.0	NR_040371	100503468.0	Mm.446943	NR_040371	ENSMUSG00000085498	Gm14023	-	predicted gene 14023	ncRNA	-2.18292257394068	-2.15545247547656	-2.03304972317742	-2.17058342868585	-2.18099422382073	-2.1536522739386	-2.16187909550322	-2.16936197735154	-0.683654500252594	0.846597994014493	1
Merged-chr16-10785631-4	chr16	10785524	10785724	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271603)	promoter-TSS (NM_001271603)	-88.0	NM_001271603	12703.0	Mm.130	NM_009896	ENSMUSG00000038037	Socs1	Cish1|Cish7|JAB|SOCS-1|SSI-1	suppressor of cytokine signaling 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101906279-2	chr7	101906179	101906379	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081679)	promoter-TSS (NM_001081679)	80.0	NM_001081679	791260.0	Mm.475469	NM_001081679	ENSMUSG00000078630	Tomt	Comt2|F930017I19Rik	transmembrane O-methyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-75557466-4	chr3	75557360	75557560	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019745)	promoter-TSS (NM_019745)	-33.0	NM_009250	20713.0	Mm.41560	NM_009250	ENSMUSG00000027834	Serpini1	AI837402|Ns|PI-12|PI12|Spi17	serine (or cysteine) peptidase inhibitor, clade I, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-63402394-4	chr17	63402279	63402479	+	835.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015794, intron 4 of 8)	L1MDa|LINE|L1	-89406.0	NR_130176	414079.0	Mm.444282	NR_130176	ENSMUSG00000090565	4930405O22Rik	-	RIKEN cDNA 4930405O22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-180255865-4	chr2	180255757	180255957	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28B|LTR|ERVL	-1522.0	NM_025587	66481.0	Mm.289669	NM_025587	ENSMUSG00000039001	Rps21	1810049N11Rik|2410030A14Rik	ribosomal protein S21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125252432-4	chr6	125252323	125252523	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-13102.0	NR_015527	73870.0	Mm.440681	NR_015527	ENSMUSG00000108129	4930417O13Rik	-	RIKEN cDNA 4930417O13 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117380693-2	chr10	117380593	117380793	+	582.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3720.0	NM_001310609	432508.0	Mm.478881	NM_001013391	ENSMUSG00000055531	Cpsf6	4733401N12Rik|AI256641|CFIM|CFIM68|HPBRII-4|HPBRII-7	cleavage and polyadenylation specific factor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-74273647-3	chr1	74273560	74273760	+	821.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4_|SINE|ID	-4940.0	NM_174985	227289.0	Mm.246587	NM_174985	ENSMUSG00000064272	Gpbar1	BG37|GPCR|GPR131|M-BAR|TGR5	G protein-coupled bile acid receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-135269344-4	chr1	135269238	135269438	+	705.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159624, intron 4 of 9)	PB1D10|SINE|Alu	-10866.0	NM_007921	13710.0	Mm.441439	NM_007921	ENSMUSG00000003051	Elf3	ESE-1|ESX|jen	E74-like factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-87862912-2	chr1	87862812	87863012	+	740.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_177646, intron 1 of 29)	intron (NM_177646, intron 1 of 29)	-8613.0	NR_136921	100503175.0	Mm.426422	NR_136921	ENSMUSG00000101942	Gm19582	-	predicted gene, 19582	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-149863367-2	chr1	149863267	149863467	+	751.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008869, intron 12 of 17)	intron (NM_008869, intron 12 of 17)	59072.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-43623158-2	chr2	43623058	43623258	+	569.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289593, intron 8 of 12)	intron (NM_001289593, intron 8 of 12)	67833.0	NM_027552	70789.0	Mm.105278	NM_027552	ENSMUSG00000026866	Kynu	4432411A05Rik	kynureninase (L-kynurenine hydrolase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81586089-4	chr15	81585998	81586198	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177821)	promoter-TSS (NM_177821)	-116.0	NM_177821	328572.0	Mm.258397	NM_177821	ENSMUSG00000055024	Ep300	A430090G16|A730011L11|KAT3B|p300|p300 HAT	E1A binding protein p300	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-32200228-3	chr19	32200111	32200311	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 5 of 9)	intron (NM_144792, intron 5 of 9)	10802.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139479248-4	chr5	139479176	139479376	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133349, intron 3 of 6)	intron (NM_133349, intron 3 of 6)	5215.0	NM_133349	100494.0	Mm.24521	NM_133349	ENSMUSG00000053581	Zfand2a	AA407930|AU016206|Airap	zinc finger, AN1-type domain 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135250509-2	chr4	135250409	135250609	+	655.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013885, intron 1 of 5)	B1F1|SINE|Alu	22251.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-167332398-2	chr1	167332298	167332498	+	856.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001039483, exon 7 of 7)	3' UTR (NM_001039483, exon 7 of 7)	-17593.0	NM_019993	56752.0	Mm.292539	NM_019993	ENSMUSG00000026687	Aldh9a1	AA139417|Abaldh|ESTM40|TMABA-DH|Tmabadh	aldehyde dehydrogenase 9, subfamily A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43493413-4	chr4	43493312	43493512	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_001460)	promoter-TSS (NR_001460)	47.0	NM_001037913	622404.0	Mm.289109	NM_001037913	ENSMUSG00000028461	Ccdc107	-	coiled-coil domain containing 107	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-30508059-2	chr3	30507959	30508159	+	917.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361034, intron 1 of 16)	CpG	1616.0	NM_001361034	14013.0	Mm.56965	NM_007963	ENSMUSG00000027684	Mecom	D630039M04Rik|Evi-1|Evi1|Jbo|Mds|Mds1|Mds1-Evi1|Prdm3|Znfpr1b1	MDS1 and EVI1 complex locus	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-12699134-3	chr10	12699031	12699231	+	744.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011682, intron 22 of 73)	intron (NM_011682, intron 22 of 73)	162604.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	1.62229585564387	2.25931792669938	2.17226611221114	1.46370649127411	1.0756173433231	0.93447562486464	1.35598944304045	0.895516494544591	-3.16102532690772	0.0149389830940473	0.144936322772814
Merged-chr18-73816608-4	chr18	73816506	73816706	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1214.0	NM_145494	107029.0	Mm.36817	NM_145494	ENSMUSG00000024556	Me2	AW120568|D030040L20Rik|NAD-ME	malic enzyme 2, NAD(+)-dependent, mitochondrial	protein-coding	5.11987227360184	5.99703551937978	5.02489542919807	5.49102823941992	5.4100415152527	5.98770659372055	4.75091948552348	5.46294208710128	0.011507377772346	0.972328593875481	0.998431161219273
Merged-chr12-3894720-4	chr12	3894604	3894804	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153743, intron 1 of 17)	intron (NM_153743, intron 1 of 17)	2960.0	NM_153743	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-151616722-4	chr1	151616643	151616843	+	935.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022018, intron 1 of 13)	RMER19B|LTR|ERVK	45370.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-44274722-4	chr2	44274640	44274840	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301831, intron 12 of 14)	intron (NM_001301831, intron 12 of 14)	-209416.0	NR_040622	320872.0	Mm.445023	NR_040622	ENSMUSG00000085089	Arhgap15os	A430092G05Rik	Rho GTPase activating protein 15, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101404449-2	chr7	101404349	101404549	+	995.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001040111, intron 29 of 33)	intron (NM_001040111, intron 29 of 33)	10061.0	NM_198096	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-124611415-4	chr2	124611316	124611516	+	927.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291000, intron 1 of 18)	intron (NM_001291000, intron 1 of 18)	1120.0	NM_172537	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-62308585-4	chr4	62308492	62308692	+	893.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355385, intron 21 of 27)	B4A|SINE|B4	17045.0	NM_001290518	20530.0	Mm.292539	NM_025286	ENSMUSG00000066152	Slc31a2	AI604396|CTR2	solute carrier family 31, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-6330848-4	chr2	6330765	6330965	+	994.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080548, intron 1 of 14)	intron (NM_001080548, intron 1 of 14)	8108.0	NM_001080548	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-39064387-2	chr2	39064287	39064487	+	581.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290649, intron 2 of 21)	B1_Mus1|SINE|Alu	1154.0	NR_110968	76899.0	Mm.131098	NM_029793	ENSMUSG00000026754	Golga1	0710001G09Rik|2210418B03Rik|AW107649|Golgi97|awag|golgin-97	golgi autoantigen, golgin subfamily a, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33918866-1	chr16	33918766	33918966	+	604.0	f0_balb.idr	intron (NM_001145884, intron 9 of 14)	intron (NM_001145884, intron 9 of 14)	48172.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-64970907-1	chr1	64970807	64971007	+	718.0	f0_balb.idr	Intergenic	Intergenic	-14083.0	NM_001039493	241075.0	Mm.239534	NM_175509	ENSMUSG00000051344	Plekhm3	9430067K14Rik|A230102O09Rik|AI449570|DAPR|Plekhm1l	pleckstrin homology domain containing, family M, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-92854684-2	chr16	92854584	92854784	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28610.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-95099172-3	chr8	95099067	95099267	+	880.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001145831)	TTS (NM_001145831)	14175.0	NM_001145832	16582.0	Mm.378951	NM_010631	ENSMUSG00000031788	Kifc3	AI325457|BB123200	kinesin family member C3	protein-coding	0.516832998857318	-0.0739702864711638	-0.0784680817010032	0.0723269875092344	0.168579504709898	-0.0729539053957589	-0.0774776187923827	0.324578540063266	-0.336596322998069	0.877568442784806	1
Merged-chr8-70545214-2	chr8	70545114	70545314	+	790.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007924, intron 1 of 11)	intron (NM_007924, intron 1 of 11)	5539.0	NM_007924	13716.0	Mm.271973	NM_007924	ENSMUSG00000070002	Ell	Ell1|Men	elongation factor RNA polymerase II	protein-coding	-0.893986561169655	-0.875744574464236	0.191235023404903	-0.88803707909448	-0.893095256885496	-0.872421296127899	-0.88349549973802	-0.887416687878218	-3.49744126941707	0.244297073838425	1
Merged-chr10-80340374-4	chr10	80340271	80340471	+	940.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_104339, exon 12 of 12)	non-coding (NR_104339, exon 12 of 12)	8077.0	NM_001285435	66548.0	Mm.71891	NM_025629	ENSMUSG00000043822	Adamtsl5	2010109H09Rik|Thsd6	ADAMTS-like 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-8939172-4	chr4	8939083	8939283	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	187859.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28812082-2	chr7	28811971	28812171	+	765.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177301, intron 1 of 12)	intron (NM_177301, intron 1 of 12)	1181.0	NM_177301	15388.0	Mm.9043	NM_177301	ENSMUSG00000015165	Hnrnpl	C79783|D830027H13Rik|Hnrpl	heterogeneous nuclear ribonucleoprotein L	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-61541028-4	chr15	61540914	61541114	+	883.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	233437.0	NR_040350	432956.0	Mm.404918	NR_040350	ENSMUSG00000116031	D030024E09Rik	-	RIKEN cDNA D030024E09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-64222817-4	chr15	64222714	64222914	+	885.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 3 of 28)	intron (NM_001276461, intron 3 of 28)	89859.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	1.48205317458359	1.49517819105624	2.22411458723254	1.90096533401975	1.61261558891922	1.50544057445089	1.05490540931898	1.56584538451273	-1.18805570085962	0.289212730071065	0.794869527756478
Merged-chr11-116807659-1	chr11	116807559	116807759	+	794.666687	f0_balb.idr	3' UTR (NM_001347633, exon 5 of 5)	3' UTR (NM_001347633, exon 5 of 5)	20387.0	NM_026280	67622.0	Mm.64962	NM_026280	ENSMUSG00000020814	Mxra7	1810057P16Rik|E130302J09Rik	matrix-remodelling associated 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-54492636-3	chr1	54492574	54492774	+	816.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163314, intron 22 of 26)	intron (NM_001163314, intron 22 of 26)	-53648.0	NM_001033194	98488.0	Mm.25856	NM_001033194	ENSMUSG00000041303	Gtf3c3	TF3C-gamma|TFIIIC102	general transcription factor IIIC, polypeptide 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5727876-6	chr19	5727833	5728033	+	967.888916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_181452)	TTS (NM_181452)	-1616.0	NM_053252	114601.0	Mm.210447	NM_053252	ENSMUSG00000024937	Ehbp1l1	G430002G23Rik	EH domain binding protein 1-like 1	protein-coding	3.22943047196154	2.52811917022941	3.96236892944759	4.18693188789203	2.79634432218273	3.02846956093401	3.87627159137304	3.05863844993086	-0.573489977063396	0.362127500616052	0.8580597646541
Merged-chr2-119208601-1	chr2	119208501	119208701	+	1000.0	f0_c57.idr	promoter-TSS (NM_001164827)	promoter-TSS (NM_001164827)	-119.0	NM_001164827	72008.0	Mm.386807	NM_028054	ENSMUSG00000068580	Zfyve19	1500041L05Rik|ANCHR	zinc finger, FYVE domain containing 19	protein-coding	6.00608248668443	5.25042517341277	5.36911785512437	5.98946932967468	6.07375849826659	5.12005406456042	5.63749607400029	5.73358829370157	-0.0156031285843824	0.957848423836923	0.998431161219273
Merged-chr8-83976288-1	chr8	83976188	83976388	+	620.0	f1_c57bl6.idr	promoter-TSS (NM_001277898)	promoter-TSS (NM_001277898)	-595.0	NM_001277898	18747.0	Mm.19111	NM_008854	ENSMUSG00000005469	Prkaca	PKCD|Pkaca	protein kinase, cAMP dependent, catalytic, alpha	protein-coding	0.104243928945468	0.580700801658297	-0.158016339960518	-0.161965044351375	-0.16755280161429	-0.15175319510074	0.315628649185125	-0.161274899777034	-1.21869969100079	0.603549005873904	1
Merged-chr12-100204090-3	chr12	100203969	100204169	+	921.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001313934, intron 3 of 5)	intron (NM_001313934, intron 3 of 5)	3925.0	NM_001313934	12313.0	Mm.285993	NM_009790	ENSMUSG00000001175	Calm1	AI256814|AI327027|AI461935|AL024000|CaM|Calm|Cam1	calmodulin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-47140046-2	chr19	47139946	47140146	+	641.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001081271)	TTS (NM_001081271)	-1752.0	NM_133746	72691.0	Mm.31663	NM_133746	ENSMUSG00000033033	Calhm2	2810048G17Rik|Fam26b	calcium homeostasis modulator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-58210174-4	chr9	58210087	58210287	+	870.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5868.0	NM_001161541	320563.0	Mm.186499	NM_177193	ENSMUSG00000051243	Islr2	B930052A04Rik|Linx|Mbu-3|mKIAA1465	immunoglobulin superfamily containing leucine-rich repeat 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43972356-4	chr4	43972262	43972462	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027450, intron 4 of 4)	intron (NM_027450, intron 4 of 4)	-11142.0	NM_001002787	442829.0	Mm.348215	NM_001002787	ENSMUSG00000070999	Ccin	4933417A14Rik	calicin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-131492816-3	chr2	131492732	131492932	+	685.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177840, intron 1 of 3)	intron (NM_001177840, intron 1 of 3)	970.0	NM_001177838	228608.0	Mm.136586	NM_145533	ENSMUSG00000027333	Smox	B130066H01Rik|PAO|PAOh1|SMO	spermine oxidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-67975152-3	chr11	67975053	67975253	+	677.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001361352)	TTS (NM_001361352)	8695.0	NM_018768	55943.0	Mm.3973	NM_018768	ENSMUSG00000020903	Stx8	0610007H08Rik|1110002H11Rik|4930571E13Rik|CARB	syntaxin 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-102513224-4	chr7	102513102	102513302	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-18429.0	NM_146840	258837.0	Mm.377714	NM_146840	ENSMUSG00000044824	Olfr545	MOR42-1|S50	olfactory receptor 545	protein-coding	4.31043060483503	3.59194989738054	3.75561513023988	3.37459555728842	2.64847382712845	2.05704486164483	3.12808695679427	3.12944334796421	-1.58961952172053	0.00910519351321278	0.101717050066599
Merged-chr12-77781519-4	chr12	77781426	77781626	+	869.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	371385.0	NM_001252616	53618.0	Mm.35628	NM_016893	ENSMUSG00000021065	Fut8	-	fucosyltransferase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-97208807-2	chr3	97208707	97208907	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_029933, exon 8 of 10)	exon (NM_029933, exon 8 of 10)	18557.0	NM_029933	77578.0	Mm.226175	NM_029933	ENSMUSG00000038256	Bcl9	2610202E01Rik|8030475K17Rik|A330041G23Rik|Gm130	B cell CLL/lymphoma 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91869127-3	chr16	91869018	91869218	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110275, intron 27 of 28)	intron (NM_001110275, intron 27 of 28)	62512.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-124707037-4	chr2	124706946	124707146	+	716.912476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53465.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-16651298-4	chr1	16651197	16651397	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310470, intron 1 of 4)	intron (NM_001310470, intron 1 of 4)	5568.0	NM_026456	67923.0	Mm.289248	NM_026456	ENSMUSG00000079658	Eloc	2610043E24Rik|2610301I15Rik|AA407206|AI987979|AW049146|Tceb1	elongin C	protein-coding	2.99391305997511	3.3476821445772	2.86706757273246	2.41173526640637	3.0182345003597	3.45041740863888	2.88936105769318	2.42424220947188	0.0883955444908981	0.895628117421436	0.998431161219273
Merged-chr2-18939066-3	chr2	18938971	18939171	+	900.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008845, intron 1 of 9)	intron (NM_008845, intron 1 of 9)	59050.0	NM_008845	18718.0	Mm.313977	NM_008845	ENSMUSG00000026737	Pip4k2a	AW742916|Pip5k2a	phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-45699515-3	chr11	45699421	45699621	+	878.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-108562.0	NR_045876	100009664.0	Mm.415439	NR_045876		F630206G17Rik	-	RIKEN cDNA F630206G17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-37139764-2	chr10	37139664	37139864	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008538)	promoter-TSS (NM_008538)	-838.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6309618-2	chr19	6309518	6309718	+	967.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033342, intron 3 of 36)	intron (NM_001033342, intron 3 of 36)	3161.0	NM_001033342	240505.0	Mm.329622	NM_001033342	ENSMUSG00000024769	Cdc42bpg	BC046418|MRCKgamma	CDC42 binding protein kinase gamma (DMPK-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-82041645-1	chr6	82041545	82041745	+	852.0	f0_balb.idr	promoter-TSS (NM_145570)	promoter-TSS (NM_145570)	17.0	NM_145570	232146.0	Mm.489683	NM_145570	ENSMUSG00000035104	Eva1a	BC014699|Fam176a|Tmem166	eva-1 homolog A (C. elegans)	protein-coding	-1.107570214359	-1.08653447535648	-1.09741130683982	-0.688779236681923	-0.841983873845991	-1.08417742060026	-1.09494903060535	-1.10420625070982	-0.619773806471497	0.851573714113283	1
Merged-chr17-6743670-2	chr17	6743570	6743770	+	617.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009510, intron 7 of 12)	intron (NM_009510, intron 7 of 12)	37840.0	NM_183368	83672.0	Mm.442201	NM_031395	ENSMUSG00000041831	Sytl3	A430092N21|Slp3|Slp3-a|Slp3-b|mFLJ00307	synaptotagmin-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-140949172-2	chr7	140949072	140949272	+	651.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_053088, exon 2 of 2)	3' UTR (NM_053088, exon 2 of 2)	1067.0	NM_053088	73835.0	Mm.389989	NM_053088	ENSMUSG00000025489	Ifitm5	1110003J06Rik|AW213665|Bril|DSPA1|Hrmp1|Hrtm1	interferon induced transmembrane protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-110530814-4	chr9	110530708	110530908	+	799.549988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1789.0	NM_001081340	235626.0	Mm.288949	NM_001081340	ENSMUSG00000044791	Setd2	4921524K10Rik|BC031601|KMT3A	SET domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-69144544-4	chr17	69144471	69144671	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355732, intron 1 of 21)	intron (NM_001355732, intron 1 of 21)	-12173.0	NM_013813	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41991662-2	chr19	41991562	41991762	+	736.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145500, intron 1 of 2)	B1_Mus2|SINE|Alu	9899.0	NM_145500	226122.0	Mm.22948	NM_145500	ENSMUSG00000025171	Ubtd1	BC016129	ubiquitin domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-100017399-2	chr14	100017299	100017499	+	660.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010636, intron 3 of 6)	intron (NM_010636, intron 3 of 6)	132397.0	NM_010636	16597.0	Mm.396499	NM_010636	ENSMUSG00000072294	Klf12	2700063E05Rik|AI225908|AI315654|AP-2rep|B130052C06Rik|D530033K05Rik	Kruppel-like factor 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21286725-6	chr9	21286626	21286826	+	689.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145416, intron 2 of 18)	intron (NM_145416, intron 2 of 18)	1243.0	NM_145416	215194.0	Mm.290690	NM_145416	ENSMUSG00000035047	Kri1	-	KRI1 homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-102462590-2	chr15	102462490	102462690	+	888.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001170911, exon 4 of 4)	3' UTR (NM_001170911, exon 4 of 4)	3420.0	NM_025385	66151.0	Mm.393955	NM_025385	ENSMUSG00000023048	Prr13	1110020C13Rik|2010324E22Rik	proline rich 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-81750269-4	chr17	81750157	81750357	+	854.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11870.0	NM_011406	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132530814-2	chr4	132530714	132530914	+	561.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_007512, exon 4 of 4)	exon (NM_007512, exon 4 of 4)	4600.0	NM_007512	11983.0	Mm.2171	NM_007512	ENSMUSG00000054428	Atpif1	Atpi|IF(1)|If1	ATPase inhibitory factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99384393-2	chr15	99384293	99384493	+	779.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8554.0	NM_026669	110213.0	Mm.16769	NM_026669	ENSMUSG00000023010	Tmbim6	5031406P05Rik|Bi1|Tegt	transmembrane BAX inhibitor motif containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-112871761-4	chr13	112871647	112871847	+	934.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028151, intron 25 of 26)	intron (NM_028151, intron 25 of 26)	55633.0	NM_028151	72198.0	Mm.291029	NM_028151	ENSMUSG00000016018	Skiv2l2	2610528A15Rik|Mtrex|mKIAA0052	superkiller viralicidic activity 2-like 2 (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-5083975-3	chr7	5083867	5084067	+	920.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001252454, exon 2 of 11)	exon (NM_001252454, exon 2 of 11)	3732.0	NM_001252454	13854.0	Mm.3091	NM_010147	ENSMUSG00000035203	Epn1	AA269831|Ibp1	epsin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-33969414-4	chr6	33969319	33969519	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009148, intron 17 of 17)	intron (NM_009148, intron 17 of 17)	-60029.0	NM_028886	74354.0	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-80130860-4	chr12	80130754	80130954	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033514, intron 2 of 2)	intron (NR_033514, intron 2 of 2)	1990.0	NR_033514	69548.0	Mm.269712	NR_033514		2310015A10Rik	5330419I17Rik	RIKEN cDNA 2310015A10 gene	ncRNA	3.33259506684008	2.66137444263074	2.25728344466456	3.75492268144549	2.80613990982736	1.91733340406054	2.83851871951388	2.95000156100752	-0.800310263841207	0.279064156196083	0.782570111402433
Merged-chr8-95003700-2	chr8	95003600	95003800	+	750.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_018882, intron 3 of 13)	intron (NM_018882, intron 3 of 13)	-13992.0	NM_173036	54672.0	Mm.27995	NM_173036	ENSMUSG00000060470	Adgrg3	A030001G24Rik|AW214383|Gpr97|Pb1|Pb99	adhesion G protein-coupled receptor G3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-71798787-4	chr1	71798665	71798865	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-89347.0	NR_027659	667931.0	Mm.214128	NR_027658	ENSMUSG00000099707	Gm8883	EG667931|Gm554	predicted gene 8883	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-105157473-5	chr4	105157331	105157531	+	891.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080555)	promoter-TSS (NM_080555)	84.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-122557545-4	chr14	122557482	122557682	+	844.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144844, intron 1 of 23)	intron (NM_144844, intron 1 of 23)	23254.0	NM_144844	110821.0	Mm.23876	NM_144844	ENSMUSG00000041650	Pcca	C79630	propionyl-Coenzyme A carboxylase, alpha polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33056478-4	chr16	33056371	33056571	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021338)	promoter-TSS (NM_021338)	-11.0	NM_001130484	57808.0	Mm.19355	NM_021338	ENSMUSG00000060636	Rpl35a	2810431L15Rik|Rpl35	ribosomal protein L35A	protein-coding	-1.02282169565898	-1.00457289942404	-0.566983280971186	-0.718896391650237	-1.02232946032566	-1.00208123094242	-1.01346801823495	-1.01915704588286	-2.76352993728863	0.379598525188825	1
Merged-chr18-32377765-3	chr18	32377678	32377878	+	863.2698359999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045403, exon 1 of 3)	non-coding (NR_045403, exon 1 of 3)	506.0	NR_045403	402767.0	Mm.385109	NR_045403	ENSMUSG00000097413	A830052D11Rik	-	RIKEN cDNA A830052D11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-109519621-1	chr7	109519521	109519721	+	1000.0	f0_balb.idr	promoter-TSS (NR_028079)	promoter-TSS (NR_028079)	426.0	NM_011975	26451.0	Mm.305750	NM_011975	ENSMUSG00000046364	Rpl27a	L27'|L27A|L29	ribosomal protein L27A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-37347984-4	chr13	37347882	37348082	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010745, intron 1 of 4)	intron (NM_010745, intron 1 of 4)	2637.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70029192-2	chr11	70029092	70029292	+	756.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007864, intron 2 of 19)	intron (NM_007864, intron 2 of 19)	10587.0	NM_007864	13385.0	Mm.27256	NM_007864	ENSMUSG00000020886	Dlg4	Dlgh4|PSD-95|PSD95|SAP90|SAP90A	discs large MAGUK scaffold protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-92207541-4	chr9	92207451	92207651	+	880.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195693, intron 5 of 6)	intron (NM_001195693, intron 5 of 6)	14615.0	NM_001195693	100504689.0	Mm.464262	NM_001195693	ENSMUSG00000095654	Plscr5	331000	phospholipid scramblase family, member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-125179281-4	chr5	125179170	125179370	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253904)	promoter-TSS (NM_001253904)	-56.0	NM_001253904	20602.0	Mm.278646	NM_011424	ENSMUSG00000029478	Ncor2	N-CoR|SMRT|SMRTe	nuclear receptor co-repressor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-13610116-1	chr6	13610016	13610216	+	545.0	f1_c57bl6.idr	Intergenic	Intergenic	-2018.0	NM_028990	101118.0	Mm.254845	NM_028990	ENSMUSG00000029569	Tmem168	5730526F17Rik|8430437G11Rik|AI462344|AI504145	transmembrane protein 168	protein-coding	-1.56355737717652	-1.81244775989375	-1.82128546162293	-1.82854501295842	-1.83962066705452	-1.81053259306168	-1.81928479966835	-1.82724555674025	-1.28500227969968	0.715751224811686	1
Merged-chr12-102449936-2	chr12	102449836	102450036	+	832.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-10123.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-113661220-4	chr6	113661105	113661305	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 2 of 11)	intron (NM_001113553, intron 2 of 11)	22738.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-162477975-4	chr1	162477875	162478075	+	953.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172646)	promoter-TSS (NM_172646)	59.0	NM_172646	103967.0	Mm.441620	NM_172646	ENSMUSG00000040265	Dnm3	9630020E24Rik|AW061159|B230343F03Rik|C530045C17|Dyna III|mKIAA0820	dynamin 3	protein-coding	1.56690173817444	1.53456093716344	3.10130512577847	2.53661270638367	1.58011390501206	1.26370939939249	2.72206559944458	2.25074868086128	-0.621999021139355	0.543809238327037	0.955585568541497
Merged-chr15-73756825-2	chr15	73756725	73756925	+	645.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001166389, exon 6 of 6)	exon (NM_001166389, exon 6 of 6)	8799.0	NM_008975	19245.0	Mm.390807	NM_008975	ENSMUSG00000059895	Ptp4a3	AV088979|Prl-3|pPtp4a3	protein tyrosine phosphatase 4a3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-138012580-4	chr3	138012484	138012684	+	805.299988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2-int|LTR|ERVL-MaLR	-31035.0	NM_011932	26377.0	Mm.254835	NM_011932	ENSMUSG00000028159	Dapp1	Bam32	dual adaptor for phosphotyrosine and 3-phosphoinositides 1	protein-coding	3.6319683121128	3.4908856099889	3.98731404793625	4.04943960448423	3.66125761610417	3.29511199536034	4.18677712148737	3.55641168406754	-0.135290237181127	0.78582568448655	0.998431161219273
Merged-chr17-23749007-7	chr17	23748963	23749163	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015472)	promoter-TSS (NR_015472)	-173.0	NR_015472	638247.0	Mm.382600	NR_015472	ENSMUSG00000097006	9530082P21Rik	E030034P13Rik	RIKEN cDNA 9530082P21 gene	ncRNA	4.48213898069853	4.69824280702855	5.13532909710018	4.19861239692339	4.63743844377104	5.38962329102923	5.35970597362637	5.33213487977747	0.646766119169919	0.0671694991962224	0.389072892511881
Merged-chr3-60474009-2	chr3	60473909	60474109	+	761.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253713, intron 2 of 9)	intron (NM_001253713, intron 2 of 9)	1179.0	NM_001253713	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-121316560-4	chr10	121316468	121316668	+	925.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361015, intron 2 of 12)	intron (NM_001361015, intron 2 of 12)	-5172.0	NM_029057	74694.0	Mm.233833	NM_029057	ENSMUSG00000052302	Tbc1d30	4930505D03Rik|9530013E20Rik	TBC1 domain family, member 30	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-180119228-4	chr2	180119127	180119327	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144500)	promoter-TSS (NM_144500)	-139.0	NM_144500	228983.0	Mm.253578	NM_144500	ENSMUSG00000039050	Osbpl2	C130070J12Rik|ORP-2|Orp2|mKIAA0772	oxysterol binding protein-like 2	protein-coding	5.99971028855551	6.23645100676408	6.65613901933869	6.93732112748391	6.36640449146754	6.46398998441672	6.74723744716773	6.54084243036716	0.0341790474660501	0.88195489930058	0.998431161219273
Merged-chr9-65032991-2	chr9	65032891	65033091	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028906, intron 1 of 20)	CpG	533.0	NM_028906	74388.0	Mm.202749	NM_028906	ENSMUSG00000032393	Dpp8	2310004I03Rik|4932434F09Rik|AI666706|DPP VIII	dipeptidylpeptidase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-181016152-2	chr1	181016052	181016252	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010145, intron 1 of 8)	intron (NM_010145, intron 1 of 8)	1417.0	NM_001312918	13849.0	Mm.9075	NM_010145	ENSMUSG00000038776	Ephx1	EH|Eph-1|Eph1|Epxh1|mEH	epoxide hydrolase 1, microsomal	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-101419456-3	chr4	101419266	101419466	+	783.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177602)	promoter-TSS (NM_001177602)	45.0	NM_001177604	11639.0	Mm.42040	NM_009647	ENSMUSG00000028527	Ak4	AK 4|Ak-3|Ak-4|Ak3|Ak3l1|D4Ertd274e	adenylate kinase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-38084008-2	chr7	38083908	38084108	+	703.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23482.0	NM_007633	12447.0	Mm.16110	NM_007633	ENSMUSG00000002068	Ccne1	AW538188|CycE1	cyclin E1	protein-coding	1.32572046527243	1.53374806872847	0.672597187063009	0.661790397597283	1.59969241510636	1.5482114784679	0.67565474037281	0.663691073726387	0.359228797486999	0.822010459183811	0.998431161219273
Merged-chr11-55467943-2	chr11	55467843	55468043	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-1809.0	NM_013716	27041.0	Mm.39631	NM_013716	ENSMUSG00000018583	G3bp1	AI849976|B430204O07|C87777|G3bp|mKIAA4115	GTPase activating protein (SH3 domain) binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166773804-2	chr2	166773704	166773904	+	973.6666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19963.0	NM_023815	76367.0	Mm.330796	NM_023815	ENSMUSG00000042854	Trp53rkb	2810408M09Rik|4933401B08Rik|5630401H01Rik|Nori-2|PRPK|Tp53rk|Trp53rk|Trp53tk|mNori-2p	transformation related protein 53 regulating kinase B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-90886893-4	chr13	90886799	90886999	+	824.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145879, intron 5 of 6)	intron (NM_001145879, intron 5 of 6)	18456.0	NM_001145879	435376.0	Mm.292579	NM_001145879	ENSMUSG00000078958	Atp6ap1l	EG435376	ATPase, H+ transporting, lysosomal accessory protein 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-66905345-2	chr10	66905245	66905445	+	846.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15039.0	NR_138560	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-21387582-4	chr5	21387484	21387684	+	879.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029195, intron 2 of 18)	intron (NM_029195, intron 2 of 18)	14911.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-25020337-4	chr13	25020245	25020445	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001013389)	promoter-TSS (NM_001013389)	-28.0	NM_001013389	380836.0	Mm.387097	NM_001013389	ENSMUSG00000021339	Mrs2	Gm902|HPT|Mrs2l|RPT	MRS2 magnesium transporter	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-144938257-4	chr7	144938168	144938368	+	870.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007631, intron 1 of 4)	intron (NM_007631, intron 1 of 4)	1657.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	1.78673775030764	1.5953591906333	1.54527949788976	3.21835247311358	2.28612138595277	2.46166181761697	2.48712793111096	1.89520917723127	0.0359071421152218	0.969859472181495	0.998431161219273
Merged-chr15-74709395-4	chr15	74709271	74709471	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008415)	promoter-TSS (NM_008415)	-49.0	NM_008415	16469.0	Mm.87052	NM_008415	ENSMUSG00000046380	Jrk	-	jerky	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-84235697-1	chr2	84235597	84235797	+	663.0	f1_c57bl6.idr	Intergenic	RMER19C|LTR|ERVK	189569.0	NM_018782	54598.0	Mm.75467	NM_018782	ENSMUSG00000059588	Calcrl	AV071593|CRLR	calcitonin receptor-like	protein-coding	-0.199050130415637	-0.441597361120429	-0.445189696932844	0.154669664798719	-0.192877463446288	-0.440785565628431	-0.444398648224672	-0.447469399798894	-1.76631515259422	0.496988609630808	1
Merged-chr15-86194852-2	chr15	86194752	86194952	+	756.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	-8711.0	NM_145475	223753.0	Mm.222685	NM_145475	ENSMUSG00000035891	Cerk	AI848610|D330016D08Rik|mKIAA1646	ceramide kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-104241397-2	chr8	104241297	104241497	+	625.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045642, intron 3 of 8)	intron (NR_045642, intron 3 of 8)	7161.0	NR_045642	57813.0	Mm.183110	NM_021028	ENSMUSG00000035824	Tk2	AU024611|mt-TK	thymidine kinase 2, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-20842810-4	chr14	20842705	20842905	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008873, exon 11 of 11)	3' UTR (NM_008873, exon 11 of 11)	6143.0	NM_008873	18792.0	Mm.4183	NM_008873	ENSMUSG00000021822	Plau	u-PA|uPA	plasminogen activator, urokinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-7728276-2	chr10	7728176	7728376	+	603.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_011835, intron 1 of 10)	intron (NM_011835, intron 1 of 10)	2276.0	NM_011835	23924.0	Mm.28127	NM_011835	ENSMUSG00000019794	Katna1	-	katanin p60 (ATPase-containing) subunit A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-17773368-4	chr13	17773316	17773516	+	897.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027118, intron 1 of 13)	intron (NM_027118, intron 1 of 13)	25943.0	NR_035412	100316665.0		NR_035412	ENSMUSG00000080574	Mir466i	Mirn466i|mmu-mir-466i	microRNA 466i	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120821055-2	chr11	120820954	120821154	+	678.833374	f1_balb.idr|f1_c57bl6.idr	exon (NM_007988, exon 4 of 43)	exon (NM_007988, exon 4 of 43)	3493.0	NM_007988	14104.0	Mm.236443	NM_007988	ENSMUSG00000025153	Fasn	A630082H08Rik|FAS	fatty acid synthase	protein-coding	1.14695529906669	0.440247021222081	0.434210257320621	0.932552979143948	0.423090255839533	0.441613869181351	0.435537907089959	1.17315923411033	-0.586559198849619	0.764744487762257	1
Merged-chr1-33768958-2	chr1	33768858	33769058	+	720.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359274, intron 12 of 13)	intron (NM_001359274, intron 12 of 13)	-11208.0	NM_145392	213539.0	Mm.247037	NM_145392	ENSMUSG00000042215	Bag2	2610042A13Rik|BC016230	BCL2-associated athanogene 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-69586213-4	chr18	69586113	69586313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 8 of 19)	intron (NM_001361128, intron 8 of 19)	240053.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-105212949-2	chr13	105212849	105213049	+	576.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360891, intron 5 of 7)	intron (NM_001360891, intron 5 of 7)	80065.0	NM_027934	71816.0	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-15994704-2	chr7	15994604	15994804	+	632.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081418, intron 3 of 13)	B1_Mur2|SINE|Alu	4791.0	NM_001081418	243842.0	Mm.440249	NM_001081418	ENSMUSG00000070808	Bicra	Gltscr1	BRD4 interacting chromatin remodeling complex associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171932703-2	chr1	171932605	171932805	+	684.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347186, intron 1 of 8)	intron (NM_001347186, intron 1 of 8)	-13349.0	NR_151536	105244010.0	Mm.417758	NR_151535		Gm37065	-	predicted gene, 37065	ncRNA	1.36161075290572	1.816615743466	1.06226074482631	1.42604844799638	2.21253674057523	1.83056341306108	1.88816450721898	1.43265159971132	1.40040550391138	0.210134207968891	0.69949048545273
Merged-chr13-86883625-2	chr13	86883525	86883725	+	795.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-836830.0	NM_007749	12867.0	Mm.378898	NM_007749	ENSMUSG00000017778	Cox7c	COXVIIc|Cox7c1	cytochrome c oxidase subunit VIIc	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-79747709-2	chr10	79747568	79747768	+	680.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 3 of 4)	(CAGA)n|Simple_repeat|Simple_repeat	-1087.0	NM_172551	216151.0	Mm.39001	NM_172551	ENSMUSG00000020329	Polrmt	1110018N15Rik|4932416K13	polymerase (RNA) mitochondrial (DNA directed)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-34118647-4	chr10	34118540	34118740	+	766.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9332.0	NM_175449	215900.0	Mm.34479	NM_175449	ENSMUSG00000046031	Fam26f	A630077B13Rik|Calhm6	family with sequence similarity 26, member F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-76623477-4	chr11	76623400	76623600	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-45761.0	NM_198894	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-90716487-4	chr6	90716392	90716592	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001134383)	promoter-TSS (NM_001134383)	37.0	NM_001134383	232227.0	Mm.196943	NM_182784	ENSMUSG00000034312	Iqsec1	AW561907|BC026481|BRAG2|D6Ertd349e|cI-43	IQ motif and Sec7 domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-95053973-4	chr4	95053840	95054040	+	983.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1718.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-120342127-3	chr14	120342030	120342230	+	760.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360376, intron 2 of 8)	intron (NM_001360376, intron 2 of 8)	35678.0	NM_001360376	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-70644544-4	chr18	70644468	70644668	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	76276.0	NM_010773	17191.0	Mm.322	NM_010773	ENSMUSG00000024513	Mbd2	MBD2a	methyl-CpG binding domain protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-31318672-4	chr6	31318573	31318773	+	941.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040261, intron 3 of 4)	intron (NR_040261, intron 3 of 4)	80100.0	NR_040300	100503869.0	Mm.370532	NR_040300	ENSMUSG00000086212	Mkln1os	Gm13845	muskelin 1, intracellular mediator containing kelch motifs, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-53783900-4	chr11	53783830	53784030	+	999.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13457.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-136248311-4	chr5	136248208	136248408	+	903.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001291240, exon 23 of 23)	3' UTR (NM_001291240, exon 23 of 23)	-3368.0	NM_018825	23921.0	Mm.425294	NM_018825	ENSMUSG00000005057	Sh2b2	Aps	SH2B adaptor protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-122797586-1	chr10	122797486	122797686	+	552.0	f1_balb.idr	intron (NM_001110218, intron 2 of 9)	intron (NM_001110218, intron 2 of 9)	118271.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	0.96236714692622	2.13455208531062	1.42467031302373	1.89575162321565	1.32966191387428	1.03068387696608	1.86197986593763	2.00301429488258	-0.196499716620169	0.871991884380866	0.998431161219273
Merged-chr7-143629287-2	chr7	143629187	143629387	+	668.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153818, intron 1 of 2)	B1_Mus1|SINE|Alu	1217.0	NR_153817	414103.0	Mm.446579	NR_153817		E230032D23Rik	-	RIKEN cDNA E230032D23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-101034602-4	chr9	101034521	101034721	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311149, intron 1 of 13)	CpG	263.0	NM_001311149	66904.0	Mm.335385	NM_025835	ENSMUSG00000032527	Pccb	1300012P06Rik|AI314687|R74805	propionyl Coenzyme A carboxylase, beta polypeptide	protein-coding	4.32485383905793	4.11326073446541	4.46845565552334	4.40055691153252	4.76568069368767	5.00478338175504	3.8470309711665	4.80209450777065	0.426902037558094	0.282347506052946	0.784878071602676
Merged-chr1-9593943-4	chr1	9593835	9594035	+	861.44165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015470, intron 3 of 4)	intron (NR_015470, intron 3 of 4)	-7332.0	NM_178399	76982.0	Mm.491098	NM_178399	ENSMUSG00000067879	3110035E14Rik	AI415019|AV164974|R75066	RIKEN cDNA 3110035E14 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126751721-2	chr7	126751621	126751821	+	547.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4b|LINE|L1	-7905.0	NM_011952	26417.0	Mm.8385	NM_011952	ENSMUSG00000063065	Mapk3	Erk-1|Erk1|Ert2|Esrk1|Mnk1|Mtap2k|Prkm3|p44|p44erk1|p44mapk	mitogen-activated protein kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122154806-3	chr5	122154695	122154895	+	779.638855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3484.0	NM_013636	19047.0	Mm.280784	NM_013636	ENSMUSG00000004455	Ppp1cc	PP-1G|PP1|dis2m1	protein phosphatase 1, catalytic subunit, gamma isoform	protein-coding	0.97227362114965	0.723812372761304	1.30055415486317	1.2583583396551	0.848568420746311	0.928562047337709	1.19420458951229	1.26579837286379	-0.0767352376364405	0.955584149026805	0.998431161219273
Merged-chr10-62336748-2	chr10	62336648	62336848	+	675.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010438, intron 4 of 21)	intron (NM_010438, intron 4 of 21)	3673.0	NM_001146100	15275.0	Mm.196605	NM_010438	ENSMUSG00000037012	Hk1	BB404130|Hk-1|Hk1-s|dea|mHk1-s	hexokinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-72443828-4	chr8	72443755	72443955	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028500)	promoter-TSS (NM_028500)	-25.0	NM_028170	72254.0	Mm.30136	NM_028170	ENSMUSG00000052794	1700030K09Rik	-	RIKEN cDNA 1700030K09 gene	protein-coding	7.20596574932844	7.58153447073513	7.65276422969818	7.04164360184347	7.22542485741432	7.24703723404711	7.09497969055758	7.41275067993149	-0.144107907482902	0.406953816989441	0.891750620279918
Merged-chr2-93413875-2	chr2	93413739	93413939	+	566.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_040529, intron 3 of 5)	intron (NR_040529, intron 3 of 5)	8168.0	NR_105967	102465605.0		NR_105967	ENSMUSG00000099238	Mir7001	Gm27886|mmu-mir-7001	microRNA 7001	ncRNA	-2.18361151404719	-2.02201993626881	-2.16403530460334	-2.1710062446989	-2.18164157430194	-2.15370992785044	-2.16211418110791	-2.16975844975469	-0.683654500252594	0.846597994014493	1
Merged-chr5-93267584-4	chr5	93267499	93267699	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007635)	promoter-TSS (NM_007635)	26.0	NM_007635	12452.0	Mm.3527	NM_007635	ENSMUSG00000029385	Ccng2	-	cyclin G2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165928033-4	chr2	165927931	165928131	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-43193.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91071845-2	chr2	91071745	91071945	+	769.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1530.0	NM_001290765	68427.0	Mm.192375	NM_026721	ENSMUSG00000002105	Slc39a13	1100001L14Rik|AA387663|ZIP-13|ZIP13	solute carrier family 39 (metal ion transporter), member 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-92212200-2	chr6	92212100	92212300	+	877.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030081, intron 1 of 11)	intron (NM_030081, intron 1 of 11)	2611.0	NM_030081	78287.0	Mm.290734	NM_030081	ENSMUSG00000014550	Rbsn	5330426D11Rik|Zfyve20	rabenosyn, RAB effector	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-109650375-4	chr11	109650244	109650444	+	925.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021880)	promoter-TSS (NM_021880)	-577.0	NM_021880	19084.0	Mm.30039	NM_021880	ENSMUSG00000020612	Prkar1a	1300018C22Rik|RIalpha|Tse-1|Tse1	protein kinase, cAMP dependent regulatory, type I, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46050557-1	chr19	46050457	46050657	+	551.0	f1_balb.idr	Intergenic	MLTR11B|LTR|ERVK	-5246.0	NM_001113408	16825.0	Mm.327442	NM_010697	ENSMUSG00000025223	Ldb1	CLIM2|NLI	LIM domain binding 1	protein-coding	-0.0146690698397404	0.628584313357778	-0.00284367780630734	-0.00728239659048158	-0.0135687603699971	0.00419090724245039	0.589035160058071	0.434265047251805	0.644295441467746	0.774039005560357	1
Merged-chr2-153497087-2	chr2	153496987	153497187	+	754.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001134300, intron 1 of 10)	intron (NM_001134300, intron 1 of 10)	32884.0	NM_001134300	329540.0	Mm.50600	NM_001001986	ENSMUSG00000061411	Nol4l	4931410H15|8430427H17Rik|AI429157|Gm1636	nucleolar protein 4-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-88537586-4	chr4	88537481	88537681	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14787.0	NM_010510	15977.0	Mm.1245	NM_010510	ENSMUSG00000048806	Ifnb1	IFN-beta|IFNB|Ifb	interferon beta 1, fibroblast	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-88467008-1	chr12	88466908	88467108	+	578.0	f0_balb.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-89685.0	NR_045888	71818.0	Mm.490789	NR_045888	ENSMUSG00000113434	3200001D21Rik	-	RIKEN cDNA 3200001D21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-6428855-2	chr4	6428755	6428955	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010945, intron 9 of 30)	intron (NM_010945, intron 9 of 30)	25416.0	NM_010945	18201.0	Mm.3059	NM_010945	ENSMUSG00000028245	Nsmaf	AA959567|C630007J05|Fan	neutral sphingomyelinase (N-SMase) activation associated factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-66323223-4	chr8	66323110	66323310	+	944.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175188, intron 4 of 7)	intron (NM_175188, intron 4 of 7)	-63091.0	NM_001166375	72925.0	Mm.380457	NM_175188	ENSMUSG00000036469	March1	2900024D24Rik|BB085186	membrane-associated ring finger (C3HC4) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-37150245-2	chr6	37150145	37150345	+	766.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347104, intron 1 of 32)	intron (NM_001347104, intron 1 of 32)	149731.0	NM_001081206	320127.0	Mm.119469	NM_001081206	ENSMUSG00000038665	Dgki	6430604M11Rik|C130010K08Rik	diacylglycerol kinase, iota	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-137333603-4	chr5	137333487	137333687	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031406)	promoter-TSS (NM_031406)	-5.0	NM_031406	83704.0	Mm.235625	NM_031406	ENSMUSG00000037344	Slc12a9	CIP1	solute carrier family 12 (potassium/chloride transporters), member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-4367967-2	chr18	4367867	4368067	+	568.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040328, exon 3 of 4)	non-coding (NR_040328, exon 3 of 4)	-7625.0	NM_001361008	67440.0	Mm.49826	NM_026157	ENSMUSG00000024234	Mtpap	0610027A18Rik|AW551379|Papd1	mitochondrial poly(A) polymerase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-95033772-2	chr13	95033672	95033872	+	663.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172263, intron 16 of 19)	intron (NM_172263, intron 16 of 19)	57428.0	NM_172590	218460.0	Mm.33856	NM_172590	ENSMUSG00000042015	Wdr41	B830029I03Rik|MSTP048	WD repeat domain 41	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106131964-4	chr11	106131858	106132058	+	898.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011947, intron 6 of 15)	intron (NM_011947, intron 6 of 15)	27969.0	NM_001356459	67803.0	Mm.21687	NM_172397	ENSMUSG00000040699	Limd2	0610025L06Rik|AI413966	LIM domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-53551631-4	chr7	53551530	53551730	+	871.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	340259.0	NR_105746	102466619.0		NR_105746	ENSMUSG00000099176	Mir6238	Gm27982|mmu-mir-6238	microRNA 6238	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-148550946-2	chr5	148550846	148551046	+	762.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359199, intron 3 of 6)	intron (NM_001359199, intron 3 of 6)	727.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55654612-4	chr19	55654529	55654729	+	999.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045318, intron 2 of 3)	(A)n|Simple_repeat|Simple_repeat	47575.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-37583032-1	chr13	37582932	37583132	+	595.0	f1_balb.idr	Intergenic	Intergenic	237687.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	1.60168662827963	2.12652790707849	1.60425598627836	1.05106864452648	1.81390064493322	1.50916270372875	1.46368693376211	1.69526819722852	-0.0943560042276442	0.933303370861611	0.998431161219273
Merged-chr7-38167944-4	chr7	38167839	38168039	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15278.0	NM_001085385	72244.0	Mm.187554	NM_028166		1600014C10Rik	AI428873	RIKEN cDNA 1600014C10 gene	protein-coding	2.16058231784442	2.55295701154245	2.76713700438917	1.99648043308036	1.7488638223493	2.44516056966352	3.16180091062336	2.00661035111514	0.134636838213061	0.875012724771947	0.998431161219273
Merged-chr12-4133122-1	chr12	4133022	4133222	+	972.3333130000001	f0_balb.idr	promoter-TSS (NM_001159536)	promoter-TSS (NM_001159536)	-275.0	NM_001159537	104111.0	Mm.489807	NM_138305	ENSMUSG00000020654	Adcy3	AC3|mKIAA0511	adenylate cyclase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-93174583-4	chr1	93174459	93174659	+	852.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310428, intron 1 of 31)	intron (NM_001310428, intron 1 of 31)	6136.0	NM_001310428	381284.0	Mm.193346	NM_001310428	ENSMUSG00000084989	Crocc2	E030010N08Rik|Gm976	ciliary rootlet coiled-coil, rootletin family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21164140-4	chr9	21164004	21164204	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1610.0	NM_183408	18577.0	Mm.191749	NM_019798	ENSMUSG00000032177	Pde4a	D9Ertd60e|Dpde2	phosphodiesterase 4A, cAMP specific	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16404925-2	chr7	16404825	16405025	+	574.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198631, intron 1 of 13)	intron (NM_198631, intron 1 of 13)	3729.0	NM_198631	330474.0	Mm.333594	NM_198631	ENSMUSG00000059273	Zc3h4	Bwq1|Gm768|Kiaa1064-hp|mKIAA1064	zinc finger CCCH-type containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141345038-4	chr7	141344957	141345157	+	901.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133191, intron 4 of 20)	B1_Mur1|SINE|Alu	6055.0	NM_133191	98845.0	Mm.27451	NM_133191	ENSMUSG00000025504	Eps8l2	AI042819|AW545405|Eps8r2	EPS8-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-98832571-3	chr12	98832470	98832670	+	851.111145	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081191, intron 21 of 43)	MTD|LTR|ERVL-MaLR	61548.0	NM_001160108	75553.0	Mm.25549	NM_029334	ENSMUSG00000021012	Zc3h14	1010001P15Rik|1700016A15Rik|2700069A02Rik|AU014748	zinc finger CCCH type containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-84585217-2	chr6	84585117	84585317	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177713, intron 2 of 6)	CpG-12217	8593.0	NM_175475	232174.0	Mm.255246	NM_175475	ENSMUSG00000063415	Cyp26b1	CP26|P450RAI-2	cytochrome P450, family 26, subfamily b, polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-139169507-4	chr4	139169401	139169601	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11154.0	NR_033543	100038595.0	Mm.385206	NR_033543	ENSMUSG00000073739	Gm16287	-	predicted gene 16287	ncRNA	5.98947246197916	6.86604846100562	6.53272303159004	6.28856683462668	5.96328267191023	6.65003042406016	6.54205852044975	5.79237074665991	-0.186596359106054	0.467333151185277	0.923733632276929
Merged-chr2-120028503-2	chr2	120028403	120028603	+	615.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_104353, intron 1 of 26)	URR1A|DNA|hAT-Charlie	1020.0	NM_001114637	433466.0	Mm.482417	NM_001114637	ENSMUSG00000098789	Jmjd7	-	jumonji domain containing 7	protein-coding	1.78095630991049	0.876554538875581	1.77242791073929	1.37149616790078	0.828820380152828	1.48044003063884	1.78855543432502	0.849665502324185	-0.6500721190424	0.639105750626127	0.982599433509505
Merged-chr8-109567625-2	chr8	109567525	109567725	+	781.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175646, intron 1 of 3)	B4|SINE|B4	1733.0	NM_175646	234723.0	Mm.37667	NM_175646	ENSMUSG00000031723	Txnl4b	AI595343|D530025J19Rik|DLP|Dim2	thioredoxin-like 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-46518189-2	chr18	46518089	46518289	+	921.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_173423, intron 2 of 2)	intron (NM_173423, intron 2 of 2)	7782.0	NM_173423	240263.0	Mm.38249	NM_173423	ENSMUSG00000033319	Fem1c	2610312A07Rik|3632443A22Rik|AI646567	fem-1 homolog c (C.elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-88710577-2	chr9	88710477	88710677	+	830.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359992, intron 2 of 2)	MLTR14|LTR|ERV1	9010.0	NM_001359992	100039707.0	Mm.347377	NM_001128601	ENSMUSG00000079427	Mthfsl	Gm2382	5, 10-methenyltetrahydrofolate synthetase-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-53763163-4	chr19	53763041	53763241	+	873.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170847, intron 1 of 13)	intron (NM_001170847, intron 1 of 13)	85835.0	NM_001170847	73713.0	Mm.313695	NM_001170847	ENSMUSG00000043639	Rbm20	1110018J23Rik|2010003H22Rik|AI646761	RNA binding motif protein 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-59472504-4	chr11	59472394	59472594	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178417)	promoter-TSS (NM_178417)	-20.0	NM_178417	237775.0	Mm.339604	NM_178417	ENSMUSG00000054519	Zfp867	-	zinc finger protein 867	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-76694600-1	chr16	76694500	76694700	+	541.0	f1_c57bl6.idr	Intergenic	Intergenic	84492.0	NR_155453	102632814.0		NR_155453	ENSMUSG00000109333	Gm30790	Gm45028	predicted gene, 30790	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-75362469-2	chr9	75362369	75362569	+	624.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2c|LINE|L2	14711.0	NM_013479	12049.0	Mm.25988	NM_013479	ENSMUSG00000032191	Bcl2l10	AA420380|AU023065|Boo|C85687|Diva	Bcl2-like 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-65700251-1	chr5	65700151	65700351	+	736.0	f1_balb.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	-2395.0	NM_001081321	71521.0	Mm.278974	NM_027818	ENSMUSG00000029202	Pds5a	9030416H16Rik|E230024D05Rik|mKIAA0648	PDS5 cohesin associated factor A	protein-coding	2.49877340232356	2.7994428546314	1.78909766924268	2.90314825615591	2.85557787291722	2.81975886992861	2.19787741894761	2.91770007997134	0.324898987004807	0.672689812337953	0.99440487726309
Merged-chr13-54071116-2	chr13	54071016	54071216	+	589.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027324)	promoter-TSS (NM_027324)	-729.0	NM_027324	14057.0	Mm.134191	NM_027324	ENSMUSG00000021474	Sfxn1	2810002O05Rik|A930015P12Rik|f	sideroflexin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-121462910-3	chr1	121462798	121462998	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029955, intron 10 of 23)	intron (NM_029955, intron 10 of 23)	31831.0	NM_029955	70829.0	Mm.25788	NM_027567	ENSMUSG00000026339	Ccdc93	4633402D15Rik|9230102M16Rik	coiled-coil domain containing 93	protein-coding	3.27158744184667	4.53525046822554	3.75646326220169	3.91591524072136	1.23738491578489	1.46185593421754	1.39498938533914	2.9692336364298	-3.36724132668254	0.0209878923710873	0.185424198781612
Merged-chr3-108207164-2	chr3	108207064	108207264	+	751.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175183, intron 5 of 11)	intron (NM_175183, intron 5 of 11)	3363.0	NM_001289545	72522.0	Mm.187326	NM_175183	ENSMUSG00000048997	Atxn7l2	2610528J18Rik	ataxin 7-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-97018943-3	chr9	97018826	97019026	+	683.888855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145134)	promoter-TSS (NM_145134)	-571.0	NM_145134	211949.0	Mm.491271	NM_145134	ENSMUSG00000046997	Spsb4	D030068E18Rik|SSB-4|Ssb4	splA/ryanodine receptor domain and SOCS box containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101949165-4	chr7	101949064	101949264	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15307.0	NM_001162974	69358.0	Mm.214841	NM_027053	ENSMUSG00000064307	Lrrc51	1700008D07Rik|Lrtomt	leucine rich repeat containing 51	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115538221-2	chr11	115538101	115538301	+	781.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-1971.0	NM_133354	170930.0	Mm.29923	NM_133354	ENSMUSG00000020738	Sumo2	SUMO-2|Smt3A|Smt3b|Smt3h2	small ubiquitin-like modifier 2	protein-coding	2.2613864047485	1.55266348538764	1.70634980264089	2.46852636223782	2.50468844613538	1.5621111760133	1.71847561964198	2.39705178272704	0.148990655084244	0.878263700281478	0.998431161219273
Merged-chr17-46029184-2	chr17	46029084	46029284	+	571.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025250, intron 1 of 7)	intron (NM_001025250, intron 1 of 7)	3193.0	NM_001287058	22339.0	Mm.282184	NM_009505	ENSMUSG00000023951	Vegfa	Vegf|Vpf	vascular endothelial growth factor A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-109959199-4	chr7	109959095	109959295	+	889.537476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021494, intron 1 of 22)	intron (NM_021494, intron 1 of 22)	1227.0	NM_021494	19347.0	Mm.21904	NM_021494	ENSMUSG00000035901	Dennd5a	1500012B19Rik|AJ245569|AW496491|ORF37|Rab6ip1|mKIAA1091	DENN/MADD domain containing 5A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-105807687-2	chr12	105807575	105807775	+	642.099976	f0_balb.idr|f1_balb.idr	intron (NM_011112, intron 6 of 21)	intron (NM_011112, intron 6 of 21)	22978.0	NM_001347440	18789.0	Mm.255877	NM_011112	ENSMUSG00000021111	Papola	Pap|PapIII|Plap	poly (A) polymerase alpha	protein-coding	1.51902060071207	1.4102626122456	2.43802337713664	2.250185737397	2.62444743322043	2.76155738987412	2.84611115817182	2.58539899907709	1.6218390584743	0.0637141476044016	0.376074563860299
Merged-chr16-34573732-4	chr16	34573666	34573866	+	871.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-59739.0	NM_177357	545156.0	Mm.82274	NM_177357	ENSMUSG00000061751	Kalrn	2210407G14Rik|AV235988|DUET|E530005C20Rik|Gm539|Hapip|TRAD	kalirin, RhoGEF kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-16831214-2	chr12	16831115	16831315	+	555.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR41|LTR|ERVL	20250.0	NM_033270	50496.0	Mm.23296	NM_033270	ENSMUSG00000057469	E2f6	AI462434|E2F6a|E2F6b|EMA	E2F transcription factor 6	protein-coding	-0.787065877066199	-0.414762116747566	-0.780307197478523	-0.782848899477974	-0.786438781156637	-0.775693184278991	-0.190427886393714	-0.782404946501607	0.988099166065959	0.741912569917058	1
Merged-chr12-73358806-4	chr12	73358688	73358888	+	853.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50775.0	NR_046013	380765.0	Mm.490476	NR_046013	ENSMUSG00000056359	D830013O20Rik	Gm891	RIKEN cDNA D830013O20 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126745417-2	chr7	126745317	126745517	+	622.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14209.0	NM_011952	26417.0	Mm.8385	NM_011952	ENSMUSG00000063065	Mapk3	Erk-1|Erk1|Ert2|Esrk1|Mnk1|Mtap2k|Prkm3|p44|p44erk1|p44mapk	mitogen-activated protein kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-121890782-4	chr3	121890678	121890878	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62451.0	NM_172525	214137.0	Mm.229287	NM_172525	ENSMUSG00000039831	Arhgap29	6720461J18Rik|A830014I19|AU040217|B130017I01Rik|C76601|Parg1	Rho GTPase activating protein 29	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-63589471-4	chr9	63589383	63589583	+	946.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030068, intron 3 of 21)	RMER16_Mm|LTR|ERVK	13010.0	NM_030068	78250.0	Mm.444612	NM_030068	ENSMUSG00000037801	Iqch	4921504K03Rik	IQ motif containing H	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-60687587-1	chr9	60687487	60687687	+	567.0	f0_balb.idr	promoter-TSS (NM_001146047)	promoter-TSS (NM_001146047)	-53.0	NM_001146047	102747.0	Mm.269413	NM_145616	ENSMUSG00000047766	Lrrc49	AI430817|AW050057|D430025H09Rik|PGs4|p79	leucine rich repeat containing 49	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-174236188-4	chr1	174236086	174236286	+	937.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011465, intron 42 of 51)	intron (NM_011465, intron 42 of 51)	14790.0	NM_146715	258710.0	Mm.377647	NM_146715	ENSMUSG00000050788	Olfr419	MOR267-6	olfactory receptor 419	protein-coding	0.861376156568353	1.52381462153753	1.12532286373798	1.67067176137079	0.865031072660515	2.11958691916607	1.4806499029623	1.68038044655239	0.931501911058323	0.4711240590721	0.925882871339486
Merged-chr1-148993822-3	chr1	148993716	148993916	+	784.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	928623.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-21515386-2	chr17	21515249	21515449	+	614.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20190.0	NM_144515	22710.0	Mm.296100	NM_144515	ENSMUSG00000051341	Zfp52	KRAB11|Zfp-52|Zfp76|mszf23-2|mszf24|mszf34|mszf75|zfec29	zinc finger protein 52	protein-coding	-0.640837965250207	-0.629964330583184	-0.633529948180929	-0.0996494004400971	-0.64016010430076	-0.123621453244201	-0.632743785522108	-0.635798735565488	-0.091200599602648	0.974783044145781	1
Merged-chr14-55863950-4	chr14	55863812	55864012	+	892.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001040072, exon 3 of 8)	exon (NM_001040072, exon 3 of 8)	9797.0	NM_001040072	277154.0	Mm.319347	NM_001040072	ENSMUSG00000075592	Nynrin	AA409373|C80530|mKIAA1305	NYN domain and retroviral integrase containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65553349-1	chr9	65553249	65553449	+	659.0	f1_c57bl6.idr	3' UTR (NM_153119, exon 6 of 6)	3' UTR (NM_153119, exon 6 of 6)	26738.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-93487930-2	chr10	93487830	93488030	+	644.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010401)	promoter-TSS (NM_010401)	-838.0	NM_010401	15109.0	Mm.13000	NM_010401	ENSMUSG00000020017	Hal	Hsd|his|histidase	histidine ammonia lyase	protein-coding	2.02204690967033	2.40359966744168	1.65704399022559	2.37347583945823	2.16100957672458	2.12157540191445	2.75911269562932	3.03109019718096	0.978705260333993	0.24812411743239	0.74758343357745
Merged-chr4-149782583-4	chr4	149782501	149782701	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8334.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-84752957-4	chr6	84752850	84753050	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177077, intron 19 of 21)	intron (NM_177077, intron 19 of 21)	-159042.0	NM_001177713	232174.0	Mm.255246	NM_175475	ENSMUSG00000063415	Cyp26b1	CP26|P450RAI-2	cytochrome P450, family 26, subfamily b, polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-10874557-4	chr4	10874453	10874653	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026005)	promoter-TSS (NM_026005)	55.0	NM_026005	67157.0	Mm.440552	NM_026005	ENSMUSG00000059482	2610301B20Rik	AI428449	RIKEN cDNA 2610301B20 gene	protein-coding	3.377546491184	3.61567957450556	3.57833063295377	3.75665972209206	3.60211135598384	3.94566864341886	3.00618111324988	3.4976842821447	-0.0507840453028314	0.922772867942689	0.998431161219273
Merged-chr2-167632119-4	chr2	167632022	167632222	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311131)	promoter-TSS (NM_001311131)	-117.0	NM_023230	66589.0	Mm.278783	NM_023230	ENSMUSG00000078923	Ube2v1	0610011J09Rik|AI256840|CROC-1|CROC1|D7Bwg1382e|UEV-1	ubiquitin-conjugating enzyme E2 variant 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-11177548-4	chr16	11177436	11177636	+	897.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_151506)	promoter-TSS (NR_151506)	-640.0	NR_151506	105246071.0	Mm.426799	NR_151506		4930509G22Rik	-	RIKEN cDNA 4930509G22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-5115792-2	chr15	5115692	5115892	+	541.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026069)	promoter-TSS (NM_026069)	-821.0	NM_026069	67281.0	Mm.10474	NM_026069	ENSMUSG00000041841	Rpl37	3110005M08Rik	ribosomal protein L37	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-138982441-3	chr3	138982316	138982516	+	665.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356388, intron 4 of 13)	B4A|SINE|B4	92785.0	NM_145544	229877.0	Mm.28893	NM_145544	ENSMUSG00000028149	Rap1gds1	BC011279|GDS1	RAP1, GTP-GDP dissociation stimulator 1	protein-coding	1.68440232956448	2.4395699648563	1.18142905508525	1.77886839069676	1.34788650879923	1.91431325368864	2.86719771493177	2.56156243331283	1.07966839534913	0.294811009687943	0.798191705447
Merged-chr14-78732271-2	chr14	78732188	78732388	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081336, intron 1 of 29)	CpG	441.0	NM_001081336	380921.0	Mm.89591	NM_001081336	ENSMUSG00000034731	Dgkh	5930402B05Rik|D130015C16|DGK	diacylglycerol kinase, eta	protein-coding	0.0476813413663556	-0.080550959533914	-0.0857313423488877	0.709556300231188	0.289132656434534	0.118655265827348	-0.0845885806730653	-0.089031159700349	-1.00903943567362	0.641455312050614	1
Merged-chr5-6068044-2	chr5	6067944	6068144	+	635.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-318727.0	NM_027399	70358.0	Mm.85429	NM_027399	ENSMUSG00000015652	Steap1	2410007B19Rik|Prss24|Steap	six transmembrane epithelial antigen of the prostate 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-30612716-4	chr14	30612622	30612822	+	996.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011103, intron 1 of 17)	intron (NM_011103, intron 1 of 17)	-2412.0	NM_001310682	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	-1.43172712806865	-1.3992492906874	-1.40907085678131	-1.41713858359971	-0.932192548427885	-1.39712091634321	-1.40684746950024	-1.41569446435649	2.19283191591698	0.528233640655333	1
Merged-chr6-121226296-4	chr6	121226200	121226400	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_017379)	TTS (NM_017379)	15566.0	NM_017379	53857.0	Mm.32884	NM_017379	ENSMUSG00000030137	Tuba8	-	tubulin, alpha 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131098488-1	chr1	131098388	131098588	+	633.0	f1_balb.idr	promoter-TSS (NM_008551)	promoter-TSS (NM_008551)	-645.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	1.72654367330463	2.2061625903567	2.00561285329505	2.07195083807781	1.42050625518577	2.34099550041886	1.70987649025033	2.54379451810121	0.210728696767984	0.826128179561489	0.998431161219273
Merged-chr10-83152358-4	chr10	83152270	83152470	+	797.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021439, intron 2 of 2)	intron (NM_021439, intron 2 of 2)	166873.0	NM_021439	58250.0	Mm.360747	NM_021439	ENSMUSG00000034612	Chst11	1110020P09Rik|C4ST|C4ST-1|C4ST1|C4s	carbohydrate sulfotransferase 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153349901-1	chr2	153349801	153350001	+	1000.0	f1_balb.idr	intron (NM_001039939, intron 1 of 11)	intron (NM_001039939, intron 1 of 11)	3762.0	NM_001039939	228790.0	Mm.330677	NM_001039939	ENSMUSG00000042548	Asxl1	mKIAA0978	additional sex combs like 1	protein-coding	1.81173535049613	1.41670519748127	0.792344920011369	1.16830187886566	1.37627531563509	2.01275883333751	0.796049981127844	0.781524432513429	0.0180256064866382	0.989837346636668	0.998431161219273
Merged-chr12-24706918-2	chr12	24706837	24707037	+	585.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1317.0	NM_009104	20135.0	Mm.99	NM_009104	ENSMUSG00000020649	Rrm2	AA407299|R2	ribonucleotide reductase M2	protein-coding	0.0514003846581403	0.27231577827565	0.758609217119786	0.0594941163070048	0.0526071692950624	0.0720309767919094	0.771451106425149	0.234864550924153	-0.00832812629177725	0.996780944066226	1
Merged-chr12-40657236-6	chr12	40657207	40657407	+	853.111084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 8 of 52)	intron (NM_172803, intron 8 of 52)	211254.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-127133967-4	chr2	127133855	127134055	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144818)	promoter-TSS (NM_144818)	-1.0	NM_144818	215387.0	Mm.29786	NM_144818	ENSMUSG00000034906	Ncaph	A730011O11Rik|Brrn1|CAP-H|HCAP-H|mCAP-H	non-SMC condensin I complex, subunit H	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-52723969-2	chr15	52723869	52724069	+	617.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027212, intron 3 of 3)	intron (NM_027212, intron 3 of 3)	11524.0	NM_027212	69790.0	Mm.195562	NM_027212	ENSMUSG00000038622	Med30	1810038N03Rik|2510044J04Rik|TRAP25|Thrap6	mediator complex subunit 30	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70785262-2	chr11	70785162	70785362	+	714.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20815.0	NM_177565	193043.0	Mm.40966	NM_177565	ENSMUSG00000043602	Zfp3	AI854635|B230309J24|Fnp-1|Zfp-3	zinc finger protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-67380481-2	chr1	67380381	67380581	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER3D-int|LTR|ERVK	257454.0	NM_001080809	227231.0	Mm.343942	NM_001080809	ENSMUSG00000025991	Cps1	4732433M03Rik|CPS|D1Ucla3	carbamoyl-phosphate synthetase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-92722397-4	chr10	92722314	92722514	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008682)	promoter-TSS (NM_008682)	4.0	NM_008682	17997.0	Mm.2998	NM_008682	ENSMUSG00000019988	Nedd1	-	neural precursor cell expressed, developmentally down-regulated gene 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-16464595-2	chr18	16464495	16464695	+	588.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	344651.0	NM_007664	12558.0	Mm.257437	NM_007664	ENSMUSG00000024304	Cdh2	CDHN|N-CAD|Ncad	cadherin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-23553213-2	chr17	23553113	23553313	+	803.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_126484, intron 1 of 1)	intron (NR_126484, intron 1 of 1)	2414.0	NR_126484	320020.0	Mm.445111	NR_126484		6330415G19Rik	-	RIKEN cDNA 6330415G19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-109893786-3	chr2	109893661	109893861	+	877.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011699, intron 1 of 4)	MIR|SINE|MIR	2883.0	NM_011699	22343.0	Mm.235300	NM_011699	ENSMUSG00000027162	Lin7c	9130007B12Rik|AI303698|AU019331|AW125731|D2Ertd520e|LIN-7-C|LIN-7C|MALS-3|Veli3	lin-7 homolog C (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115510020-10	chr5	115509835	115510035	+	905.7666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011223, intron 1 of 10)	intron (NM_011223, intron 1 of 10)	3259.0	NM_133915	19303.0	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-34803917-4	chr1	34803819	34804019	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183019, intron 1 of 9)	(TG)n|Simple_repeat|Simple_repeat	2197.0	NM_183019	226970.0	Mm.41604	NM_183019	ENSMUSG00000037509	Arhgef4	9330140K16Rik|Asef	Rho guanine nucleotide exchange factor (GEF) 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-25089261-2	chr8	25089161	25089361	+	723.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_031257, intron 1 of 11)	MLT1B|LTR|ERVL-MaLR	12550.0	NM_031257	83436.0	Mm.261122	NM_031257	ENSMUSG00000031557	Plekha2	6430512N22Rik|AI851530|AU041791|TAPP2|W91773	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-92118047-4	chr5	92117971	92118171	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359197, intron 1 of 10)	intron (NM_001359197, intron 1 of 10)	19654.0	NM_001359197	23881.0	Mm.290530	NM_011816	ENSMUSG00000029405	G3bp2	AA409541|E430034L04Rik|G3BP|mKIAA0660	GTPase activating protein (SH3 domain) binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81349971-2	chr10	81349871	81350071	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163165, intron 2 of 9)	intron (NM_001163165, intron 2 of 9)	455.0	NM_001163165	15353.0	Mm.38474	NM_010440	ENSMUSG00000020232	Hmg20b	AW610687|BRAF35|Hmgx2|Hmgxb2|Smarce1r	high mobility group 20B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-26532645-2	chr8	26532545	26532745	+	631.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	291778.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-17664773-1	chr12	17664673	17664873	+	636.0	f1_balb.idr	Intergenic	Intergenic	-26036.0	NM_001361645	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	0.257873241683248	0.282393502822797	0.274427727097734	1.03894487254002	0.676623608659012	1.06629191672757	0.472759735166679	0.269322308521913	0.73545097182376	0.69852812928761	1
Merged-chr7-75587706-3	chr7	75587596	75587796	+	759.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 5 of 36)	intron (NM_029332, intron 5 of 36)	132162.0	NM_029332	75547.0	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-97821561-4	chr15	97821488	97821688	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001204280, intron 1 of 21)	intron (NM_001204280, intron 1 of 21)	-6725.0	NM_001204281	56233.0	Mm.384027	NM_019572	ENSMUSG00000022475	Hdac7	5830434K02Rik|HD7|HD7a|Hdac7a|mFLJ00062	histone deacetylase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100814704-4	chr11	100814600	100814800	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113563, intron 1 of 18)	intron (NM_001113563, intron 1 of 18)	7870.0	NM_011489	20851.0	Mm.34064	NM_011489	ENSMUSG00000020919	Stat5b	-	signal transducer and activator of transcription 5B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-118081986-4	chr3	118081912	118082112	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-213076.0	NM_029655	76561.0	Mm.33824	NM_029655	ENSMUSG00000028007	Snx7	2510028H01Rik	sorting nexin 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-128846251-4	chr6	128846141	128846341	+	699.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19926.0	NM_030599	80782.0	Mm.6180	NM_030599	ENSMUSG00000079298	Klrb1b	Klrb1d|Ly55b|Ly55d|NKR-P1B|NKR-P1D|Nkrp1-b|Nkrp1b|Nkrp1d|ly-55b|ly-55d	killer cell lectin-like receptor subfamily B member 1B	protein-coding	0.58622472655169	0.136113310059706	0.692781841873937	0.125782538165599	0.264375049801706	0.137427708422173	0.703906019700163	0.126568658436421	-0.532825481499575	0.793180551701558	1
Merged-chr3-89908542-4	chr3	89908450	89908650	+	828.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010559, intron 1 of 9)	intron (NM_010559, intron 1 of 9)	4646.0	NM_001310676	16194.0	Mm.2856	NM_010559	ENSMUSG00000027947	Il6ra	CD126|IL-6R|IL-6R-alpha|IL-6RA|Il6r	interleukin 6 receptor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-40882992-4	chr10	40882901	40883101	+	953.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031877)	promoter-TSS (NM_031877)	142.0	NM_027879	71713.0	Mm.46063	NM_027879	ENSMUSG00000038446	Cdc40	1200003H23Rik|EHB3|PRP17	cell division cycle 40	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-34502657-3	chr18	34502560	34502760	+	833.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146084, intron 1 of 20)	intron (NM_146084, intron 1 of 20)	4163.0	NM_146084	225358.0	Mm.226899	NM_146084	ENSMUSG00000036501	Fam13b	2610024E20Rik|AW060714|AW546153	family with sequence similarity 13, member B	protein-coding	1.6222737931364	0.987228615922347	0.969938388504605	1.71570071913134	1.73207748074052	1.7271515538866	1.98780057055311	1.16530656790825	1.02660444025535	0.408413966556773	0.892181486875301
Merged-chr18-52567512-4	chr18	52567411	52567611	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Helitron1Na_Mam|RC|Helitron	-37644.0	NM_001286182	16948.0	Mm.172	NM_010728	ENSMUSG00000024529	Lox	AI893619|TSC-160|rrg	lysyl oxidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-30111704-2	chr5	30111604	30111804	+	646.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001167879, intron 2 of 5)	intron (NM_001167879, intron 2 of 5)	-5618.0	NM_001256263	433868.0	Mm.450696	NM_001256263	ENSMUSG00000086815	3110082J24Rik	-	RIKEN cDNA 3110082J24 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-58978914-4	chr19	58978810	58979010	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175172, intron 14 of 14)	intron (NM_175172, intron 14 of 14)	-35238.0	NM_001327998	73442.0	Mm.39739	NM_175199	ENSMUSG00000025092	Hspa12a	1700063D12Rik|AI118035|AI840429|AW048913|AW556406|D5Mgi40|Gm19925|mKIAA0417	heat shock protein 12A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26644865-2	chr17	26644765	26644965	+	578.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026170, intron 9 of 9)	intron (NM_026170, intron 9 of 9)	-31531.0	NM_025272	11974.0	Mm.22602	NM_025272	ENSMUSG00000015575	Atp6v0e	Atp6k|Atp6v0e1|M9.2	ATPase, H+ transporting, lysosomal V0 subunit E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-94184521-4	chr8	94184422	94184622	+	949.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5433.0	NM_013602	17748.0	Mm.192991	NM_013602	ENSMUSG00000031765	Mt1	MT-I|Mt-1	metallothionein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-21200223-4	chr5	21200118	21200318	+	999.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153365, intron 3 of 26)	intron (NR_153365, intron 3 of 26)	13951.0	NM_001359877	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120522476-2	chr11	120522376	120522576	+	999.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8251.0	NM_008101	14527.0	Mm.22329	NM_008101	ENSMUSG00000025127	Gcgr	GR	glucagon receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-85458562-4	chr9	85458435	85458635	+	921.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-131385.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	1.95067462071216	1.62790351744935	0.731516422486144	1.70466967773679	0.89454188470079	0.751064491166372	0.735080015228671	1.11523324972799	-2.94606817913734	0.0472678950365156	0.315295010451276
Merged-chr2-59440658-2	chr2	59440558	59440758	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43995.0	NM_029723	76747.0	Mm.275769	NM_029723	ENSMUSG00000026989	Dapl1	2310032F03Rik|EEDA	death associated protein-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-5691982-4	chr2	5691908	5692108	+	938.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290374, intron 1 of 9)	intron (NM_001290374, intron 1 of 9)	-15962.0	NM_001290376	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	3.90643590186071	2.8737476581852	3.91206136367289	3.495800282521	4.41596182596585	3.56103433401075	4.62335396985039	4.41446497049571	0.9598591233944	0.0499072238783602	0.325663636018437
Merged-chr10-80902660-2	chr10	80902560	80902760	+	963.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010722, exon 12 of 12)	3' UTR (NM_010722, exon 12 of 12)	-1691.0	NM_013895	30055.0	Mm.142132	NM_013895	ENSMUSG00000020219	Timm13	D10Ertd378e|Tim9|Timm9	translocase of inner mitochondrial membrane 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166810943-2	chr2	166810843	166811043	+	603.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085495, intron 1 of 38)	intron (NM_001085495, intron 1 of 38)	5362.0	NM_001085495	99371.0	Mm.297192	NM_001085495	ENSMUSG00000074582	Arfgef2	AI463430|AW493672|BIG2|E230011G24Rik	ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55685961-4	chr14	55685864	55686064	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4147.0	NM_145705	28113.0	Mm.29346	NM_145705	ENSMUSG00000007589	Tinf2	AW552114|D14Wsu146e|Tin2	Terf1 (TRF1)-interacting nuclear factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-21569332-7	chr11	21569251	21569451	+	967.095215	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316675, intron 1 of 8)	intron (NM_001316675, intron 1 of 8)	2583.0	NM_008618	17449.0	Mm.212703	NM_008618	ENSMUSG00000020321	Mdh1	B230377B03Rik|D17921|MDH-s|MDHA|Mor-2|Mor2	malate dehydrogenase 1, NAD (soluble)	protein-coding	3.51798086607583	3.93389404009375	3.41385786166772	3.76842391344017	3.78320332768986	4.36783514317516	2.53207182286039	3.23865391867814	-0.0338922376564588	0.952779690978387	0.998431161219273
Merged-chr19-25171497-2	chr19	25171397	25171597	+	572.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028785, intron 34 of 47)	intron (NM_028785, intron 34 of 47)	-65478.0	NM_181404	107351.0	Mm.260722	NM_181404	ENSMUSG00000032702	Kank1	A930031B09Rik|AU015049|AW121052|Ankrd15|D330024H06Rik|mKIAA0172	KN motif and ankyrin repeat domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-45083229-2	chr2	45083129	45083329	+	991.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355291, intron 2 of 9)	intron (NM_001355291, intron 2 of 9)	27048.0	NM_001289521	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-20073416-2	chr10	20073316	20073516	+	779.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_008580, intron 11 of 29)	intron (NM_008580, intron 11 of 29)	-75504.0	NM_008635	17761.0	Mm.20928	NM_008635	ENSMUSG00000019996	Map7	E-MAP-115|MAP-7|Mtap7|R75000|mshi|mste|ste	microtubule-associated protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-40237811-2	chr1	40237711	40237911	+	681.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008362, intron 1 of 10)	B4A|SINE|B4	12731.0	NM_008362	16177.0	Mm.896	NM_008362	ENSMUSG00000026072	Il1r1	CD121a|CD121b|IL-1R1|IL-iR|Il1r-1	interleukin 1 receptor, type I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-33083659-3	chr15	33083567	33083767	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176073, intron 1 of 7)	intron (NM_176073, intron 1 of 7)	538.0	NM_176073	54381.0	Mm.158251	NM_018755	ENSMUSG00000039007	Cpq	1190003P12Rik|2610034C17Rik|Hls2|Lal-1|Pgcp	carboxypeptidase Q	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-87299172-4	chr17	87299076	87299276	+	992.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028639, intron 3 of 19)	intron (NM_028639, intron 3 of 19)	16290.0	NM_028639	225049.0	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-149860110-2	chr1	149860010	149860210	+	569.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008869, intron 13 of 17)	(TG)n|Simple_repeat|Simple_repeat	62329.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-83694235-2	chr12	83694148	83694348	+	579.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008943, intron 1 of 11)	B4A|SINE|B4	5685.0	NM_008943	19164.0	Mm.998	NM_008943	ENSMUSG00000019969	Psen1	Ad3h|PS-1|PS1|S182	presenilin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-86463945-4	chr10	86463848	86464048	+	783.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013722, intron 2 of 13)	intron (NM_013722, intron 2 of 13)	34948.0	NM_001164495	27204.0	Mm.394931	NM_013722	ENSMUSG00000059602	Syn3	-	synapsin III	protein-coding	3.85498733340578	3.96243015312157	4.49415261162426	4.96786478956789	3.29709262688631	3.39211487359084	4.82146662971774	4.44455944873813	-0.323581253325939	0.52152086661728	0.947836760490745
Merged-chr12-70494996-4	chr12	70494885	70495085	+	863.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_037248, intron 2 of 4)	intron (NR_037248, intron 2 of 4)	41831.0	NM_028339	72736.0	Mm.204670	NM_028339	ENSMUSG00000021072	Tmx1	2810425A04Rik|AI465319|Txndc1	thioredoxin-related transmembrane protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-90167846-2	chr16	90167746	90167946	+	749.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25609.0	NR_033476	100038709.0	Mm.484070	NR_033476		Gm10789	-	predicted gene 10789	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-119358966-2	chr8	119358866	119359066	+	854.2000119999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14428.0	NM_024219	68196.0	Mm.358714	NM_024219	ENSMUSG00000031839	Hsbp1	0610007A03Rik|AA408769|Hsp25	heat shock factor binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100474139-1	chr7	100474039	100474239	+	790.5	f0_balb.idr	intron (NM_009464, intron 1 of 6)	intron (NM_009464, intron 1 of 6)	1148.0	NM_009464	22229.0	Mm.6254	NM_009464	ENSMUSG00000032942	Ucp3	AI645527|Slc25a9|UCP-3	uncoupling protein 3 (mitochondrial, proton carrier)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-157457613-4	chr2	157457487	157457687	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025395, intron 4 of 13)	CpG	33294.0	NM_001025395	20779.0	Mm.22845	NM_009271	ENSMUSG00000027646	Src	AW259666|pp60c-src	Rous sarcoma oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-22152925-4	chr3	22152852	22153052	+	939.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030732, intron 2 of 15)	intron (NM_030732, intron 2 of 15)	76300.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-5741195-4	chr11	5741102	5741302	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361590)	promoter-TSS (NM_001361590)	-26.0	NM_178623	72046.0	Mm.271657	NM_178623	ENSMUSG00000049680	Urgcp	2010005J08Rik|9130001I21Rik|AW060359|Urg4|mKIAA1507	upregulator of cell proliferation	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-35172594-2	chr7	35172494	35172694	+	574.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13791.0	NM_017394	53896.0	Mm.35567	NM_017394	ENSMUSG00000030495	Slc7a10	AL024237|Asc-1|D7Bwg0847e	solute carrier family 7 (cationic amino acid transporter, y+ system), member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-106306908-4	chr9	106306812	106307012	+	896.395874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027354, intron 8 of 10)	intron (NM_027354, intron 8 of 10)	25851.0	NM_027354	70235.0	Mm.23054	NM_027354	ENSMUSG00000023345	Poc1a	2510040D07Rik|Wdr51a|cha	POC1 centriolar protein A	protein-coding	-2.18138529563533	-2.15523716995652	-2.1631445789866	-2.16963996020037	-2.05513010215571	-2.15352360143315	-2.16135451490766	-2.16847729006863	0.759018020146679	0.829933115115583	1
Merged-chr9-109094538-2	chr9	109094438	109094638	+	817.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172775)	promoter-TSS (NM_172775)	-898.0	NM_172775	235611.0	Mm.53862	NM_172775	ENSMUSG00000053646	Plxnb1	2900002G15Rik|AU042020|mKIAA0407	plexin B1	protein-coding	0.0534646727375502	-0.15884717998991	-0.162102790938608	0.193467531788199	0.0590755000414117	-0.158107567524864	-0.161388320520841	0.198417436362235	0.0336223834130123	0.988117968901012	1
Merged-chr19-41771937-3	chr19	41771841	41772041	+	946.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163495, intron 10 of 10)	intron (NM_001163495, intron 10 of 10)	24980.0	NR_040320	100502871.0	Mm.394485	NR_040320		Gm19424	-	predicted gene, 19424	ncRNA	5.19712792280119	5.00998480376154	5.31570038188959	4.21312567095932	3.25541327518783	4.04906969662644	2.59521748325105	2.9785055851716	-2.20780617517028	4.05909608247792e-06	0.000214227425795763
Merged-chr1-131282513-2	chr1	131282413	131282613	+	781.599976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2950.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-31025120-3	chr16	31025021	31025221	+	750.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198626, intron 2 of 3)	intron (NM_198626, intron 2 of 3)	56311.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	1.44493396389669	1.86348838747086	0.84933376130121	2.57155705313154	0.775796668017665	0.893062172682191	1.1677066805303	3.37181908551441	0.555498923215813	0.7910390356109	0.998431161219273
Merged-chr12-87406579-1	chr12	87406479	87406679	+	1000.0	f0_c57.idr	Intergenic	Intergenic	-18224.0	NM_011479	20773.0	Mm.565	NM_011479	ENSMUSG00000021036	Sptlc2	LCB2|LCB2a|Spt2	serine palmitoyltransferase, long chain base subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191756742-4	chr1	191756637	191756837	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001134829, intron 4 of 7)	intron (NM_001134829, intron 4 of 7)	38342.0	NM_001134829	226856.0	Mm.277958	NM_172266	ENSMUSG00000026623	Lpgat1	AI649174|AW112037|BC013667	lysophosphatidylglycerol acyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-118800277-4	chr7	118800196	118800396	+	784.299988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027815, intron 19 of 30)	intron (NM_027815, intron 19 of 30)	55317.0	NM_001168220	66356.0	Mm.482278	NM_023197	ENSMUSG00000030980	Knop1	2310008H09Rik|Tsg118	lysine rich nucleolar protein 1	protein-coding	3.84048391288652	3.86664685750543	1.96826823880815	4.37340271761465	3.54294276233003	3.02871834475117	2.23076492034639	4.00477490479815	-0.587053183607252	0.396282222662158	0.883276804275027
Merged-chr5-105011810-4	chr5	105011703	105011903	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29086.0	NM_030239	27405.0	Mm.389663	NM_030239	ENSMUSG00000029299	Abcg3	Abcp2|Mxr2	ATP binding cassette subfamily G member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-97422357-4	chr15	97422246	97422446	+	953.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-175059.0	NM_001164602	105827.0	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-88238853-5	chr1	88238744	88238944	+	789.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001281466, intron 14 of 41)	intron (NM_001281466, intron 14 of 41)	11824.0	NM_001281466	100040766.0	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	Heatr7b1	maestro heat-like repeat family member 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-74190233-3	chr18	74190138	74190338	+	560.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17580.0	NM_001164355	66468.0	Mm.283406	NM_025581	ENSMUSG00000036223	Ska1	2810433K01Rik|AV117428	spindle and kinetochore associated complex subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-93199005-4	chr2	93198851	93199051	+	927.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001356535, exon 7 of 9)	exon (NM_001356535, exon 7 of 9)	11403.0	NM_001025246	277414.0	Mm.41033	NM_001025246	ENSMUSG00000068735	Trp53i11	Tp53i11	transformation related protein 53 inducible protein 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-46472533-2	chr11	46472433	46472633	+	595.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134250, intron 5 of 6)	Lx5|LINE|L1	17602.0	NM_134250	171285.0	Mm.72168	NM_134250	ENSMUSG00000020399	Havcr2	TIM-3|Tim3|Timd3	hepatitis A virus cellular receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84995996-1	chr8	84995896	84996096	+	544.0	f1_balb.idr	intron (NM_133255, intron 11 of 21)	intron (NM_133255, intron 11 of 21)	5401.0	NM_001167991	170833.0	Mm.247775	NM_133255	ENSMUSG00000052566	Hook2	A630054I03Rik	hook microtubule tethering protein 2	protein-coding	1.20192215205212	0.734909672600925	0.716124613534591	1.92641930599303	2.20307612660061	0.73906046735555	1.48740185243171	0.703827370042853	0.600412367793546	0.691152695520228	0.996768576110068
Merged-chr7-145287908-2	chr7	145287808	145288008	+	720.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3897.0	NR_132642	233979.0	Mm.102235	NM_146206	ENSMUSG00000048677	Tpcn2	D830047E22Rik|Gm35086	two pore segment channel 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-9338321-3	chr11	9338207	9338407	+	945.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178259, intron 27 of 61)	L5|LINE|RTE-X	146365.0	NM_178259	268379.0	Mm.39270	NM_178259	ENSMUSG00000004668	Abca13	9830132L24|A930002G16Rik|AI956815	ATP-binding cassette, sub-family A (ABC1), member 13	protein-coding	2.00507077185985	1.46448793879911	1.93789395822139	1.38850838195808	2.02243220123626	1.21298423546892	2.64247258382255	2.4869712890913	1.24039831245963	0.234729855401605	0.731086761108682
Merged-chr8-106137714-2	chr8	106137614	106137814	+	593.833313	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_176838)	promoter-TSS (NM_176838)	-740.0	NM_176838	77411.0	Mm.183003	NM_176838	ENSMUSG00000084128	Esrp2	9530027K23Rik|Rbm35b	epithelial splicing regulatory protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-8991675-3	chr19	8991659	8991859	+	941.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039959, intron 1 of 5)	intron (NM_001039959, intron 1 of 5)	2475.0	NM_001286518	66395.0	Mm.203866	NM_009643	ENSMUSG00000069833	Ahnak	DY6	AHNAK nucleoprotein (desmoyokin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-61224059-4	chr8	61223970	61224170	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021506)	promoter-TSS (NM_021506)	-101.0	NM_021506	59009.0	Mm.27949	NM_021506	ENSMUSG00000031642	Sh3rf1	2200003J05Rik|Posh|R75531|Sh3md2	SH3 domain containing ring finger 1	protein-coding	3.06954855128082	1.11451097371821	2.59354234470191	1.0419148240763	3.09598187769617	1.12320144950903	2.61632139355449	1.04773333442665	0.0420655932743222	0.98653769696577	0.998431161219273
Merged-chr10-80387212-2	chr10	80387112	80387312	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_198615, exon 1 of 2)	exon (NM_198615, exon 1 of 2)	439.0	NM_198615	237400.0	Mm.268389	NM_198615	ENSMUSG00000048696	Mex3d	BC059858|Rkhd1	mex3 RNA binding family member D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80056933-2	chr7	80056833	80057033	+	603.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175433, intron 1 of 4)	intron (NM_175433, intron 1 of 4)	18324.0	NR_045695	100859962.0	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-49198051-2	chr13	49197951	49198151	+	965.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10504.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-110602049-4	chr13	110601952	110602152	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	207008.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124077014-1	chr5	124076914	124077114	+	555.0	f1_c57bl6.idr	intron (NM_019875, intron 8 of 11)	intron (NM_019875, intron 8 of 11)	18784.0	NM_019875	56325.0	Mm.254839	NM_019875	ENSMUSG00000029408	Abcb9	TAPL|mKIAA1520	ATP-binding cassette, sub-family B (MDR/TAP), member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-72323239-4	chr2	72323140	72323340	+	949.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023057, intron 2 of 19)	intron (NM_023057, intron 2 of 19)	37539.0	NM_178084	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-108043179-2	chr3	108043079	108043279	+	853.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001160411, intron 5 of 7)	intron (NM_001160411, intron 5 of 7)	1677.0	NM_026764	14865.0	Mm.31203	NM_026764	ENSMUSG00000027890	Gstm4	1110004G14Rik|GSTM7-7|Gstb-4|Gstb4	glutathione S-transferase, mu 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-146655431-4	chr3	146655331	146655531	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4114.0	NM_029144	75015.0	Mm.250432	NM_029144	ENSMUSG00000048652	4930503B20Rik	1700013A07Rik|1700095G21Rik|4930483N21Rik|Gm1652|Samd13	RIKEN cDNA 4930503B20 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-28076136-1	chr5	28076036	28076236	+	607.0	f0_balb.idr	intron (NM_153526, intron 4 of 4)	intron (NM_153526, intron 4 of 4)	4724.0	NM_153526	231070.0	Mm.30221	NM_153526	ENSMUSG00000045294	Insig1	1810013C12Rik|Insig-1	insulin induced gene 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-11599636-4	chr2	11599536	11599736	+	803.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152824, intron 2 of 11)	intron (NM_152824, intron 2 of 11)	3563.0	NM_152824	76938.0	Mm.182769	NM_152824	ENSMUSG00000037197	Rbm17	2700027J02Rik	RNA binding motif protein 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-34882399-1	chr4	34882299	34882499	+	1000.0	f0_balb.idr	intron (NM_013889, intron 1 of 7)	CpG	549.0	NM_013889	30046.0	Mm.38193	NM_013889	ENSMUSG00000039967	Zfp292	5730450D02Rik|5830493J20Rik|9430062L07Rik|AI449016|Krox-10|Zfp-15|Zfp15|Zn-15|Zn-16|mKIAA0530	zinc finger protein 292	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101296827-4	chr7	101296757	101296957	+	921.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001111111, exon 5 of 18)	exon (NM_001111111, exon 5 of 18)	5231.0	NM_001111111	73683.0	Mm.275744	NM_001111111	ENSMUSG00000047767	Atg16l2	2410118P20Rik	autophagy related 16-like 2 (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-12395221-4	chr13	12395117	12395317	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144835)	promoter-TSS (NM_144835)	-158.0	NM_144835	217995.0	Mm.171186	NM_144835	ENSMUSG00000050244	Heatr1	AA517551|B130016L12Rik|BC019693	HEAT repeat containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-11343507-4	chr16	11343396	11343596	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028964, intron 1 of 20)	MIR3|SINE|MIR	20592.0	NM_028964	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-82747202-4	chr11	82747108	82747308	+	892.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009839, intron 5 of 13)	intron (NM_009839, intron 5 of 13)	17113.0	NM_009839	12467.0	Mm.4126	NM_009839	ENSMUSG00000020698	Cct6b	CCT-zeta-2|CCTzeta-2|Cctz-2|TCP-1-zeta-2	chaperonin containing Tcp1, subunit 6b (zeta)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-142016927-2	chr4	142016827	142017027	+	643.625	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_131014)	promoter-TSS (NR_131014)	-971.0	NR_131014	78917.0	Mm.139995	NR_131014	ENSMUSG00000085761	4930455G09Rik	-	RIKEN cDNA 4930455G09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-126939003-2	chr6	126938903	126939103	+	562.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138594)	promoter-TSS (NM_138594)	584.0	NM_001347455	19362.0	Mm.204634	NM_009013	ENSMUSG00000030346	Rad51ap1	2510006L10Rik|RAB22	RAD51 associated protein 1	protein-coding	2.87443166397053	2.12519129998372	2.56730712360217	3.9545995557539	2.81118946176698	2.14204495041004	2.43745793552919	3.70526426272542	-0.263046917168287	0.735125169159132	0.998431161219273
Merged-chr11-70648058-5	chr11	70647922	70648122	+	849.7999880000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024211)	promoter-TSS (NM_024211)	735.0	NM_027445	70510.0	Mm.261818	NM_027445	ENSMUSG00000040746	Rnf167	0610010G05Rik|5730408C10Rik|AU019305|AV328608	ring finger protein 167	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-113468747-2	chr6	113468647	113468847	+	912.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145826, intron 12 of 14)	intron (NM_145826, intron 12 of 14)	-2708.0	NM_178942	171095.0	Mm.213397	NM_134159	ENSMUSG00000030281	Il17rc	1110025H02Rik|Gm19850|IL-17RC|IL17-RC|IL17-RL|Il17rl	interleukin 17 receptor C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171389715-1	chr1	171389615	171389815	+	1000.0	f1_balb.idr	intron (NM_001005508, intron 1 of 11)	intron (NM_001005508, intron 1 of 11)	755.0	NM_001005508	226652.0	Mm.251048	NM_001005508	ENSMUSG00000048865	Arhgap30	6030405P05Rik|Gm102|mFLJ00267	Rho GTPase activating protein 30	protein-coding	3.45671878125753	1.75162427743932	3.0924976344127	2.89387677519685	3.88890179843474	3.51719939227487	3.48346128302178	3.65415939020117	1.11582692286577	0.0775030423257751	0.423571895759786
Merged-chr11-47197484-4	chr11	47197384	47197584	+	945.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011891, intron 2 of 7)	intron (NM_011891, intron 2 of 7)	181818.0	NM_011891	24052.0	Mm.338890	NM_011891	ENSMUSG00000020354	Sgcd	35kDa|delta-SG	sarcoglycan, delta (dystrophin-associated glycoprotein)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-28036063-2	chr5	28035963	28036163	+	691.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35349.0	NM_153526	231070.0	Mm.30221	NM_153526	ENSMUSG00000045294	Insig1	1810013C12Rik|Insig-1	insulin induced gene 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101368728-7	chr7	101368549	101368749	+	850.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040111, intron 2 of 33)	L1ME4b|LINE|L1	-9473.0	NM_001040112	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	-0.719035798507251	-1.16449571712793	-1.17514211765492	-1.1838873880354	-1.18865077678778	-1.16218859772121	-1.00521552208443	-1.18232198881852	-1.39506443050583	0.674342714648981	1
Merged-chr6-13598465-4	chr6	13598361	13598561	+	990.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155435, intron 1 of 3)	intron (NR_155435, intron 1 of 3)	9637.0	NR_155435	101118.0	Mm.254845	NM_028990	ENSMUSG00000029569	Tmem168	5730526F17Rik|8430437G11Rik|AI462344|AI504145	transmembrane protein 168	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-100370616-2	chr2	100370516	100370716	+	735.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-1254132.0	NM_009020	19374.0	Mm.4988	NM_009020	ENSMUSG00000032864	Rag2	Rag-2	recombination activating gene 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-148477745-4	chr5	148477674	148477874	+	972.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	73899.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-151333290-4	chr5	151333199	151333399	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35376.0	NR_045700	625175.0	Mm.443286	NR_045699	ENSMUSG00000097321	1700028E10Rik	A630054D14|Gm6561	RIKEN cDNA 1700028E10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-47320090-4	chr4	47319973	47320173	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-33149.0	NM_001312868	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-29469207-2	chr6	29469107	29469307	+	681.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_025381, intron 1 of 1)	intron (NM_025381, intron 1 of 1)	1424.0	NM_025381	66144.0	Mm.371614	NM_025381	ENSMUSG00000004285	Atp6v1f	1110004G16Rik	ATPase, H+ transporting, lysosomal V1 subunit F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-174299155-2	chr2	174299055	174299255	+	720.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_010309, exon 1 of 12)	exon (NM_010309, exon 1 of 12)	1296.0	NM_001310085	14683.0	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-56767352-1	chr8	56767252	56767452	+	804.0	f0_balb.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	216218.0	NM_015791	50753.0	Mm.251174	NM_015791	ENSMUSG00000038206	Fbxo8	Fbx8	F-box protein 8	protein-coding	0.910022969364546	0.9917751012782	1.60799152611809	0.945708227163946	1.61995573858045	2.10903635264747	2.13661897805564	2.59733608154726	3.38685740843599	0.00778820639435591	0.0913718060490373
Merged-chr7-80369182-4	chr7	80369046	80369246	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172903, intron 3 of 23)	MER117|DNA|hAT-Charlie	2229.0	NM_172903	140481.0	Mm.269245	NM_172903	ENSMUSG00000038886	Man2a2	1700052O22Rik|4931438M07Rik|AI480988|MX|Man IIx	mannosidase 2, alpha 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-122971040-2	chr7	122970940	122971140	+	780.333313	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045614)	promoter-TSS (NR_045614)	476.0	NM_175023	19647.0	Mm.4480	NM_011247	ENSMUSG00000030779	Rbbp6	4933422O15Rik|AI316869|BB233631|C030034J04Rik|C77662|P2P-R|PACT	retinoblastoma binding protein 6, ubiquitin ligase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-55782025-2	chr16	55781925	55782125	+	635.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40113.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-70992936-4	chr17	70992828	70993028	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001357820)	TTS (NM_001357820)	-2412.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	3.93640967215122	4.47549031301961	4.89929602215349	3.63194746238375	4.54969850056135	4.87211584513688	5.56419738150309	4.94302049291688	0.883246317486017	0.0316514513775683	0.245742523918075
Merged-chr15-81018956-2	chr15	81018856	81019056	+	627.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001082536, intron 8 of 13)	intron (NM_001082536, intron 8 of 13)	41191.0	NM_134091	105835.0	Mm.274943	NM_134091	ENSMUSG00000042303	Sgsm3	1810012I01Rik|AI428557|BB175482|Cip85|R75178|RUSC3|Rutbc3	small G protein signaling modulator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-38086448-1	chr16	38086348	38086548	+	795.0	f1_c57bl6.idr	non-coding (NR_033221, exon 1 of 1)	non-coding (NR_033221, exon 1 of 1)	-2553.0	NM_001347232	56637.0	Mm.394930	NM_019827	ENSMUSG00000022812	Gsk3b	7330414F15Rik|8430431H08Rik|C86142|GSK-3|GSK-3beta|GSK3	glycogen synthase kinase 3 beta	protein-coding	-0.39081468229036	0.380797723145299	-0.381019461761298	0.177527219719818	-0.38990241020516	-0.375203050238788	-0.379970856693086	-0.384051112130419	-3.70576408804562	0.150972707575482	1
Merged-chr17-6005309-2	chr17	6005209	6005409	+	879.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357667, intron 5 of 24)	intron (NM_001357667, intron 5 of 24)	-2271.0	NM_001290698	20975.0	Mm.236068	NM_011523	ENSMUSG00000023805	Synj2	AI481647|SJ2|mKIAA0348	synaptojanin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-126986847-4	chr10	126986741	126986941	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113470, intron 1 of 7)	intron (NM_001113470, intron 1 of 7)	8124.0	NM_001113470	52468.0	Mm.29490	NM_146012	ENSMUSG00000078429	Ctdsp2	AI586070|D10Ertd73e|OS-4|OS4|SCP2	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-79534981-1	chr3	79534881	79535081	+	545.0	f1_balb.idr	intron (NM_001162999, intron 1 of 16)	B1_Mus2|SINE|Alu	32698.0	NM_001162999	329679.0	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-120755509-2	chr4	120755409	120755609	+	621.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8333.0	NM_001081142	60613.0	Mm.249977	NM_001081142	ENSMUSG00000028631	Kcnq4	-	potassium voltage-gated channel, subfamily Q, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-112641768-2	chr12	112641668	112641868	+	739.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_007421)	TTS (NM_007421)	-3060.0	NM_001161737	30954.0	Mm.289812	NM_013929	ENSMUSG00000064326	Siva1	CD27bp|Siva	SIVA1, apoptosis-inducing factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-22701551-4	chr8	22701453	22701653	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159774, intron 2 of 21)	Lx8b|LINE|L1	5030.0	NM_010546	16150.0	Mm.277886	NM_010546	ENSMUSG00000031537	Ikbkb	AI132552|IKK-2|IKK-beta|IKK2|IKK[b]|IKKbeta	inhibitor of kappaB kinase beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-135421249-4	chr3	135421125	135421325	+	864.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025902, intron 1 of 2)	ID_B1|SINE|B4	2208.0	NM_025902	67006.0	Mm.269993	NM_025902	ENSMUSG00000028165	Cisd2	1500009M05Rik|1500026J14Rik|1500031D15Rik|AI848398|B630006A20Rik|Miner1|Naf-1|Noxp70|Zcd2	CDGSH iron sulfur domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-49146445-2	chr13	49146345	49146545	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290313, intron 2 of 29)	intron (NM_001290313, intron 2 of 29)	1883.0	NM_029361	75607.0	Mm.342723	NM_029361	ENSMUSG00000037989	Wnk2	1810073P09Rik|AW122246|ESTM15|X83337|mKIAA1760	WNK lysine deficient protein kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166708794-3	chr2	166708716	166708916	+	908.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	RMER15|LTR|ERVL	5016.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-98835388-1	chr13	98835288	98835488	+	557.0	f1_balb.idr	Intergenic	B1_Mus1|SINE|Alu	-19939.0	NM_172591	218503.0	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-144939215-2	chr7	144939115	144939315	+	780.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007631, intron 1 of 4)	intron (NM_007631, intron 1 of 4)	710.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	-0.227416684631486	-0.205505204896175	-0.212579331533378	-0.218105348733911	0.349135756866266	0.946628414404753	-0.211010647120531	-0.217135575709209	4.16339104820936	0.0739872319602057	1
Merged-chr5-81036842-2	chr5	81036742	81036942	+	607.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198702, intron 1 of 27)	MTD|LTR|ERVL-MaLR	15249.0	NM_198702	319387.0	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	-1.56355737717652	-1.81244775989375	-1.82128546162293	-1.82854501295842	-1.83962066705452	-1.81053259306168	-1.81928479966835	-1.82724555674025	-1.28500227969968	0.715751224811686	1
Merged-chr17-56991059-2	chr17	56990959	56991159	+	801.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_017393, intron 2 of 5)	intron (NM_017393, intron 2 of 5)	795.0	NM_017393	53895.0	Mm.287892	NM_017393	ENSMUSG00000002660	Clpp	AU019820|D17Wsu160e	caseinolytic mitochondrial matrix peptidase proteolytic subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-41465027-4	chr4	41464946	41465146	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025539)	promoter-TSS (NM_025539)	-102.0	NM_025539	66401.0	Mm.28574	NM_025539	ENSMUSG00000028443	Nudt2	2310051L06Rik|AA939917|APAH1	nudix (nucleoside diphosphate linked moiety X)-type motif 2	protein-coding	7.6559246521326	8.23289746795871	7.86938395903307	7.85005413676814	7.70758097391604	8.2501119905236	7.89747846932712	7.89257372188176	0.0344825034560831	0.825801071385208	0.998431161219273
Merged-chr1-186828010-2	chr1	186827910	186828110	+	616.416687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-78652.0	NM_026041	67223.0	Mm.289841	NM_026041	ENSMUSG00000001305	Rrp15	2810430M08Rik|5430437H21Rik	ribosomal RNA processing 15 homolog (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-21628440-3	chr16	21628353	21628553	+	938.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081366, intron 45 of 46)	intron (NM_001081366, intron 45 of 46)	66212.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-118393707-2	chr1	118393607	118393807	+	598.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359330, intron 1 of 39)	intron (NM_001359330, intron 1 of 39)	4649.0	NM_001359334	76707.0	Mm.138740	NM_029709	ENSMUSG00000064302	Clasp1	1700030C23Rik|5730583A19Rik|B130045P17Rik|CLASP1alpha	CLIP associating protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-63138997-2	chr14	63138897	63139097	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007798, intron 7 of 9)	intron (NM_007798, intron 7 of 9)	16535.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-132006726-4	chr2	132006614	132006814	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175445, intron 4 of 10)	intron (NM_175445, intron 4 of 10)	23274.0	NM_175445	215653.0	Mm.204737	NM_175445	ENSMUSG00000027339	Rassf2	3830431H01Rik|9030412M04Rik|AI852669|AW495050	Ras association (RalGDS/AF-6) domain family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-44399095-4	chr11	44398974	44399174	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001303244)	promoter-TSS (NM_001303244)	-989.0	NM_001303244	16160.0	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	2.04735994002333	0.840702963427925	2.09891841911696	0.804476457723919	1.44540494272921	0.845159027392903	0.825036843708033	1.95733127725045	-0.71083638303623	0.624891072656434	0.980912176761026
Merged-chr19-6980527-4	chr19	6980380	6980580	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360286)	promoter-TSS (NM_001360286)	-16.0	NM_001166368	14227.0	Mm.4234	NM_008020	ENSMUSG00000056629	Fkbp2	mFKBP13|mFKBP2	FK506 binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-3314336-4	chr17	3314242	3314442	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-12231.0	NM_001122998	24001.0	Mm.137134	NM_011878	ENSMUSG00000023800	Tiam2	3000002F19Rik|STEF|mKIAA2016	T cell lymphoma invasion and metastasis 2	protein-coding	5.41646879750301	5.64566942238734	5.67214529308734	5.70346534958202	5.40784982669372	5.9908252082123	4.81998762802866	6.09449238491442	0.0592591963415851	0.844758238061086	0.998431161219273
Merged-chr6-51171079-4	chr6	51170976	51171176	+	902.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	98834.0	NR_029719	387166.0		NR_029719	ENSMUSG00000065505	Mir148a	Mirn148|Mirn148a|mir-148a	microRNA 148a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-80136161-2	chr12	80136061	80136261	+	974.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3317.0	NR_033514	69548.0	Mm.269712	NR_033514		2310015A10Rik	5330419I17Rik	RIKEN cDNA 2310015A10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-110438931-2	chr12	110438831	110439031	+	566.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-8248.0	NM_001135001	26931.0	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-112947351-4	chr6	112947237	112947437	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080448)	promoter-TSS (NM_080448)	-71.0	NM_080448	259302.0	Mm.236401	NM_080448	ENSMUSG00000030257	Srgap3	AI452337|Arhgap14|D130026O08Rik|Gbi|MEGAP|WRP|mKIAA0411	SLIT-ROBO Rho GTPase activating protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-88132149-4	chr17	88132061	88132261	+	946.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6649.0	NM_001190356	225058.0	Mm.312053	NM_001190356		Gm4832	EG225058	predicted gene 4832	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97152672-2	chr11	97152572	97152772	+	615.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2960.0	NM_198100	73174.0	Mm.27882	NM_198100	ENSMUSG00000038517	Tbkbp1	3110043L15Rik|ProSAPiP2|SINTBAD	TBK1 binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-19308580-2	chr2	19308480	19308680	+	556.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081083, intron 19 of 19)	intron (NM_001081083, intron 19 of 19)	-35737.0	NR_126563	108871.0	Mm.107666	NR_126563		4930447M23Rik	-	RIKEN cDNA 4930447M23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-29151747-4	chr11	29151665	29151865	+	979.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027869, intron 18 of 27)	ORR1D2|LTR|ERVL-MaLR	21014.0	NM_027869	71701.0	Mm.211131	NM_027869	ENSMUSG00000020464	Pnpt1	1200003F12Rik|Old35|PNPase|Pnptl1	polyribonucleotide nucleotidyltransferase 1	protein-coding	3.76970915934374	3.50821409598853	3.88304528942575	2.94682557556975	3.85599091610148	4.29333425851353	4.58653036804008	3.57386686505668	0.785030657902944	0.118993142436006	0.541133408551742
Merged-chr15-89160752-2	chr15	89160652	89160852	+	783.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_138749, exon 22 of 38)	exon (NM_138749, exon 22 of 38)	2156.0	NR_106066	102465672.0		NR_106066	ENSMUSG00000106328	Mir7118	mmu-mir-7118	microRNA 7118	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27556247-2	chr2	27556147	27556347	+	684.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41100.0	NM_080848	140858.0	Mm.28265	NM_080848	ENSMUSG00000026917	Wdr5	2410008O07Rik|AA408785|AA960360|Big|Big-3	WD repeat domain 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-72306522-3	chr7	72306463	72306663	+	889.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024703)	promoter-TSS (NM_001024703)	32.0	NM_001024703	244049.0	Mm.217412	NM_001024703	ENSMUSG00000032776	Mctp2	Gm489	multiple C2 domains, transmembrane 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-87970285-1	chr17	87970185	87970385	+	766.0	f1_c57bl6.idr	Intergenic	(TAAA)n|Simple_repeat|Simple_repeat	-4765.0	NM_010830	17688.0	Mm.18210	NM_010830	ENSMUSG00000005370	Msh6	AU044881|AW550279|GTBP|Gtmbp	mutS homolog 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-47459092-4	chr19	47458973	47459173	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008018, intron 1 of 14)	intron (NM_008018, intron 1 of 14)	5338.0	NM_001164717	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25274531-2	chr7	25274431	25274631	+	723.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001302811, intron 2 of 20)	intron (NM_001302811, intron 2 of 20)	6832.0	NM_001302811	71722.0	Mm.28833	NM_027882	ENSMUSG00000005442	Cic	1200010B10Rik|mKIAA0306	capicua transcriptional repressor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75656635-2	chr11	75656535	75656735	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080775, intron 1 of 31)	intron (NM_001080775, intron 1 of 31)	620.0	NM_001080775	17913.0	Mm.234502	NM_008659	ENSMUSG00000017774	Myo1c	C80397|MMIb|MYO1E|NMI|mm1beta|myr2	myosin IC	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-39266366-2	chr6	39266266	39266466	+	630.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59593.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-23418376-7	chr5	23418311	23418511	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	15942.0	NR_040469	269630.0	Mm.425231	NR_040469	ENSMUSG00000073147	5031425E22Rik	-	RIKEN cDNA 5031425E22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-38940804-2	chr6	38940704	38940904	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 1 of 12)	intron (NM_011539, intron 1 of 12)	21818.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-155692304-4	chr2	155692149	155692349	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001163452, exon 1 of 19)	exon (NM_001163452, exon 1 of 19)	135.0	NM_019828	56407.0	Mm.234944	NM_019828	ENSMUSG00000038324	Trpc4ap	4833429F06Rik|D2Ertd113e|Trrp4ap|mFLJ00177|truss	transient receptor potential cation channel, subfamily C, member 4 associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-101213760-4	chr4	101213643	101213843	+	975.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146145, intron 1 of 24)	MIR|SINE|MIR	51539.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-22122207-3	chr6	22122135	22122335	+	717.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081351, intron 8 of 21)	intron (NM_001081351, intron 8 of 21)	136325.0	NM_001081351	214642.0	Mm.221404	NM_001081351	ENSMUSG00000062980	Cped1	6720481P07|A430107O13Rik|AI552584	cadherin-like and PC-esterase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-80753507-4	chr8	80753412	80753612	+	840.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14053.0	NM_053124	93762.0	Mm.246803	NM_053124	ENSMUSG00000031715	Smarca5	4933427E24Rik|D030040M08Rik|D330027N15Rik|MommeD4|Snf2h	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3847633-4	chr19	3847538	3847738	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4135.0	NM_001271496	12660.0	Mm.225505	NM_013490	ENSMUSG00000024843	Chka	CK|CK/EK-alpha|Chetk-alpha|Chk|ChoK|EK|EtnK-alpha	choline kinase alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-84209679-4	chr10	84209599	84209799	+	943.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J2|LTR|ERVL-MaLR	-109002.0	NR_152790	102637349.0	Mm.402869	NR_152790	ENSMUSG00000111049	Gm34184	-	predicted gene, 34184	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-79565961-1	chr3	79565861	79566061	+	633.5	f1_c57bl6.idr	intron (NM_001162999, intron 1 of 16)	intron (NM_001162999, intron 1 of 16)	1718.0	NM_001162999	329679.0	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding	0.953500610928833	1.48302597289395	0.377724086366448	1.51279803812814	0.354085269773539	0.392734372678959	0.380456151114616	0.369758108825428	-4.74953647094461	0.00828035377648824	0.0950392391042467
Merged-chr9-47625920-7	chr9	47625769	47625969	+	890.119019	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	95517.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	2.80039193829026	2.68987888476012	1.36810358448722	2.95343532574746	2.29920511607266	3.24245121221872	1.65307853275017	2.00178518399784	-0.265402378484005	0.773167182584552	0.998431161219273
Merged-chr1-180428527-2	chr1	180428427	180428627	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54977.0	NM_001081227	381310.0	Mm.44791	NM_001081227	ENSMUSG00000053963	Stum	6330403A02Rik|Gm10001|R75555	mechanosensory transduction mediator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-95698009-2	chr9	95697909	95698109	+	995.5833130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	52349.0	NM_001311123	22063.0	Mm.149633	NM_011643	ENSMUSG00000032839	Trpc1	Mtrp1|Trp1|Trrp1	transient receptor potential cation channel, subfamily C, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-18626677-4	chr16	18626552	18626752	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_213614, intron 2 of 11)	CpG	3286.0	NM_213614	18951.0	Mm.20365	NM_213614	ENSMUSG00000072214	Sept5	Cdcrel-1|Cdcrel1|Pnutl1	septin 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72758823-4	chr6	72758735	72758935	+	879.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001079822, intron 3 of 12)	ORR1D2-int|LTR|ERVL-MaLR	30210.0	NM_001079822	21415.0	Mm.440067	NM_009332	ENSMUSG00000055799	Tcf7l1	Tcf-3|Tcf3|bHLHb21	transcription factor 7 like 1 (T cell specific, HMG box)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-25224225-2	chr2	25224125	25224325	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_146116, exon 2 of 4)	exon (NM_146116, exon 2 of 4)	477.0	NM_146116	227613.0	Mm.227260	NM_146116	ENSMUSG00000036752	Tubb4b	4930542G03Rik|Tubb2c|Tubb2c1	tubulin, beta 4B class IVB	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-84633287-3	chr2	84633161	84633361	+	720.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007615, intron 1 of 19)	intron (NM_007615, intron 1 of 19)	16219.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	1.94238616037034	2.51341423342665	1.95313290941809	2.03873343725514	2.26509920480795	2.42609933939427	1.9670448307608	2.04851512238897	0.14422493460321	0.868563552809318	0.998431161219273
Merged-chr11-118507397-1	chr11	118507297	118507497	+	558.0	f1_c57bl6.idr	intron (NM_001024931, intron 5 of 14)	intron (NM_001024931, intron 5 of 14)	30565.0	NM_001359368	217364.0	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-79240084-1	chr3	79239984	79240184	+	548.0	f1_c57bl6.idr	intron (NR_045502, intron 1 of 2)	L1_Mus1|LINE|L1	27165.0	NR_045502	70924.0	Mm.444622	NR_045502	ENSMUSG00000104585	4921511C10Rik	-	RIKEN cDNA 4921511C10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-77749500-2	chr9	77749400	77749600	+	791.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-5035.0	NR_151778	14629.0	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97296071-2	chr6	97295971	97296171	+	900.833374	f1_balb.idr|f1_c57bl6.idr	exon (NM_001346637, exon 21 of 23)	exon (NM_001346637, exon 21 of 23)	-43291.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	0.0513188712256646	0.276189245770185	-0.18543641250341	-0.188499798409889	0.0574127776131048	0.154215228141522	-0.184558106896829	-0.187965642078444	-0.332847354738583	0.882747665219107	1
Merged-chr9-18813426-2	chr9	18813326	18813526	+	637.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	2866.0	NM_146605	258598.0	Mm.271453	NM_146605	ENSMUSG00000078116	Olfr828	MOR149-1	olfactory receptor 828	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-120367112-1	chr14	120367012	120367212	+	672.0	f0_balb.idr	intron (NM_001360376, intron 2 of 8)	intron (NM_001360376, intron 2 of 8)	60660.0	NM_001360376	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-55118046-1	chr4	55117946	55118146	+	605.0	f0_balb.idr	Intergenic	Intergenic	170101.0	NM_172867	242466.0	Mm.102904	NM_172867	ENSMUSG00000060206	Zfp462	6030417H05|9430078C22Rik|Gt4-2|Zfpip	zinc finger protein 462	protein-coding	-0.778082596538266	-1.01822870734921	-1.02945680142399	-1.03348344941628	-0.568232152040811	-1.01579553252409	-1.02691500703827	-1.0331489920742	0.87297571659195	0.788523652777195	1
Merged-chr2-27567337-2	chr2	27567237	27567437	+	651.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	IMPB_01|Satellite|Satellite	52190.0	NM_080848	140858.0	Mm.28265	NM_080848	ENSMUSG00000026917	Wdr5	2410008O07Rik|AA408785|AA960360|Big|Big-3	WD repeat domain 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-120884105-2	chr5	120884005	120884205	+	715.666687	f1_balb.idr|f1_c57bl6.idr	intron (NR_126529, intron 2 of 6)	MusHAL1|LINE|L1	3508.0	NM_011852	23960.0	Mm.389688	NM_011852	ENSMUSG00000066861	Oas1g	AI449562|L2|Mmu-L|Mmu-L2|Oas1b|Oias-1|Oias1	2'-5' oligoadenylate synthetase 1G	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-74092961-4	chr5	74092854	74093054	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_145133)	promoter-TSS (NR_145133)	-106.0	NR_015531	70036.0	Mm.46547	NR_015531	ENSMUSG00000053656	Dancr	2700023E23Rik	differentiation antagonizing non-protein coding RNA	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-80698742-2	chr18	80698642	80698842	+	671.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198429, intron 1 of 9)	intron (NM_198429, intron 1 of 9)	9431.0	NM_001164111	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-50943341-1	chr14	50943241	50943441	+	779.0	f1_c57bl6.idr	promoter-TSS (NM_013632)	promoter-TSS (NM_013632)	-962.0	NM_013632	18950.0	Mm.17932	NM_013632	ENSMUSG00000115338	Pnp	AL024301|AU015798|Np|Np-1|Np-2|Pnp1	purine-nucleoside phosphorylase	protein-coding	0.735861572760464	0.455637783999514	1.39554631899549	0.437261812144037	0.981557076737418	1.2794252224344	0.447609199920563	0.438676375042685	0.059347470223648	0.972983212699589	0.998431161219273
Merged-chr16-17759145-3	chr16	17759057	17759257	+	845.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145479)	promoter-TSS (NM_145479)	-464.0	NM_145479	224023.0	Mm.282807	NM_145479	ENSMUSG00000022750	Klhl22	2610318I18Rik|Kelchl	kelch-like 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99097988-2	chr15	99097888	99098088	+	570.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1496.0	NM_176835	72778.0	Mm.30544	NM_176835	ENSMUSG00000038009	Dnajc22	2810451A06Rik|AI506245	DnaJ heat shock protein family (Hsp40) member C22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-100083604-5	chr12	100083312	100083512	+	854.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	IMPB_01|Satellite|Satellite	-28919.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-105704133-2	chr5	105704033	105704233	+	638.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178701, intron 1 of 2)	intron (NM_178701, intron 1 of 2)	3323.0	NM_178701	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128339567-2	chr10	128339467	128339667	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026444, intron 1 of 10)	B1F1|SINE|Alu	1840.0	NM_026444	12974.0	Mm.58836	NM_026444	ENSMUSG00000005683	Cs	2610511A05Rik|9030605P22Rik|Ahl4|BB234005|Cis	citrate synthase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-115245696-1	chr10	115245596	115245796	+	555.0	f0_balb.idr	intron (NM_025706, intron 1 of 16)	intron (NM_025706, intron 1 of 16)	5797.0	NM_025706	66687.0	Mm.22252	NM_025706	ENSMUSG00000020130	Tbc1d15	4432405K22Rik|AU022358|AU023730|AW557774|Ly6dl|Rab7-GAP	TBC1 domain family, member 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-72202179-2	chr5	72202079	72202279	+	750.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1150.0	NR_003966	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-19628378-4	chr2	19628301	19628501	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB7|LINE|L1	29496.0	NR_033642	100041244.0	Mm.407223	NR_033642		Gm3230	-	predicted gene 3230	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-88462892-4	chr17	88462812	88463012	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001355743, exon 2 of 5)	exon (NM_001355743, exon 2 of 5)	22208.0	NM_001355742	14236.0	Mm.112824	NM_180974	ENSMUSG00000034998	Foxn2	3230402J05Rik|6030465J18Rik|Fkh19|Foxn1|HTLF	forkhead box N2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30470315-2	chr2	30470215	30470415	+	822.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	3884.0	NM_030244	72500.0	Mm.295464	NM_030244	ENSMUSG00000089762	Ier5l	2610524G09Rik	immediate early response 5-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-29987580-2	chr13	29987480	29987680	+	801.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1517.0	NM_010093	13557.0	Mm.268356	NM_010093	ENSMUSG00000016477	E2f3	E2F3b|E2f3a	E2F transcription factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-66144059-4	chr2	66143978	66144178	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19285.0	NM_015736	14425.0	Mm.439760	NM_015736	ENSMUSG00000026994	Galnt3	-	polypeptide N-acetylgalactosaminyltransferase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-69501355-2	chr12	69501255	69501455	+	953.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25805.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-58156015-14	chr2	58155913	58156113	+	914.630981	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139200, intron 1 of 7)	(T)n|Simple_repeat|Simple_repeat	4109.0	NM_139200	227929.0	Mm.273905	NM_139200	ENSMUSG00000026832	Cytip	A130053M09Rik|AI462064|C80816|Cbp|Cybr|Pscdbp	cytohesin 1 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-96466676-4	chr15	96466565	96466765	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-5822.0	NM_028148	72193.0	Mm.324474	NM_028148	ENSMUSG00000033228	Scaf11	1110061H03Rik|2610510E10Rik|AI462454|CASP11|SIP1|SRRP129|Sfrs2ip|Srsf2ip|mKIAA3013	SR-related CTD-associated factor 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122732658-4	chr5	122732534	122732734	+	941.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_145358, exon 16 of 16)	3' UTR (NM_145358, exon 16 of 16)	25090.0	NM_001310718	18438.0	Mm.290884	NM_011026	ENSMUSG00000029470	P2rx4	AI504491|AW555605|D5Ertd444e|P2X4	purinergic receptor P2X, ligand-gated ion channel 4	protein-coding	-0.460788748089308	-0.585098774384935	-0.588258552290436	-0.590685020931774	-0.140827305023074	-0.584384228837657	-0.587563068044075	-0.183882664059199	2.38209690754386	0.373079824729234	1
Merged-chr15-73641023-2	chr15	73640923	73641123	+	885.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16279.0	NM_001033219	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-68794605-3	chr3	68794525	68794725	+	890.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33130.0	NR_153374	102639225.0	Mm.109095	NR_153374	ENSMUSG00000102936	Gm35584	-	predicted gene, 35584	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-17890564-2	chr16	17890464	17890664	+	650.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001109750, intron 1 of 9)	intron (NM_001109750, intron 1 of 9)	1164.0	NM_010048	13356.0	Mm.254515	NM_010048	ENSMUSG00000003166	Dgcr2	9930034O06Rik|DGS-C|Dgsc|Idd|Lan|Sez12|mKIAA0163	DiGeorge syndrome critical region gene 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-73459911-4	chr2	73459853	73460053	+	854.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	-6064.0	NM_001289722	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45556010-3	chr7	45555910	45556110	+	901.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025330, intron 1 of 8)	intron (NM_025330, intron 1 of 8)	1082.0	NM_025330	66065.0	Mm.285710	NM_025330	ENSMUSG00000030825	Hsd17b14	0610039E24Rik|Dhrs10|retSDR3	hydroxysteroid (17-beta) dehydrogenase 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-31566773-1	chr15	31566673	31566873	+	542.0	f0_balb.idr	Intergenic	Lx5|LINE|L1	-2060.0	NM_181588	69574.0	Mm.28108	NM_181588	ENSMUSG00000022235	Cmbl	2310016A09Rik	carboxymethylenebutenolidase-like (Pseudomonas)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-24431034-2	chr8	24430934	24431134	+	634.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7912.0	NM_026931	69068.0	Mm.25775	NM_026931	ENSMUSG00000056313	Tcim	1110065B09Rik|1810011O10Rik|AW121743|AW321058	transcriptional and immune response regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-15802119-3	chr19	15802050	15802250	+	762.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	122472.0	NM_001205339	107272.0	Mm.289936	NM_177420	ENSMUSG00000024640	Psat1	D8Ertd814e|EPIP|PSA|Psat	phosphoserine aminotransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-143054803-2	chr5	143054703	143054903	+	633.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359851, intron 12 of 15)	ID_B1|SINE|B4	58217.0	NM_207110	108086.0	Mm.381440	NM_080561	ENSMUSG00000045078	Rnf216	2810055G22Rik|AI647468|AU019462|C86502|F830018F18Rik|TRIAD3|UIP83|Ubce7ip1	ring finger protein 216	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-122654568-4	chr6	122654458	122654658	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	28134.0	NM_139218	73708.0	Mm.27982	NM_139218	ENSMUSG00000046323	Dppa3	2410075G02Rik|PCG7|PGC7|Stella	developmental pluripotency-associated 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-86201726-2	chr11	86201626	86201826	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178309)	promoter-TSS (NM_178309)	366.0	NR_130958	74038.0	Mm.171304	NR_130958	ENSMUSG00000085208	Brip1os	4632419I22Rik	BRCA1 interacting protein C-terminal helicase 1, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-43378413-4	chr7	43378316	43378516	+	967.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27075.0	NM_145581	233186.0	Mm.290569	NM_145581	ENSMUSG00000039013	Siglecf	Siglec5|mSiglec-F	sialic acid binding Ig-like lectin F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-130496384-3	chr2	130496325	130496525	+	896.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355161, intron 1 of 21)	intron (NM_001355161, intron 1 of 21)	46147.0	NM_001355161	19262.0	Mm.224246	NM_008980	ENSMUSG00000027303	Ptpra	Ptpa|Ptpalpha|Rptpalpha|Rptra|Rptralpha	protein tyrosine phosphatase, receptor type, A	protein-coding	1.53329733812113	2.82523103825694	1.6856786339101	2.23460576599882	3.45110338344638	2.02153131087953	3.96344864656177	3.12277741339525	2.09615322150079	0.0103561462810866	0.111537740646747
Merged-chr1-136608572-3	chr1	136608474	136608674	+	696.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-16327.0	NM_177643	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-80145278-2	chr11	80145178	80145378	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3125.0	NM_183275	68550.0	Mm.18466	NM_183275	ENSMUSG00000046909	Tefm	1110002N22Rik	transcription elongation factor, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-19999921-4	chr10	19999791	19999991	+	976.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008580, intron 1 of 29)	C-rich|Low_complexity|Low_complexity	65365.0	NM_008580	26408.0	Mm.6595	NM_008580	ENSMUSG00000071369	Map3k5	7420452D20Rik|ASK|ASK1|MAPKKK5|Mekk5	mitogen-activated protein kinase kinase kinase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44072319-3	chr7	44072218	44072418	+	746.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20028.0	NM_020268	16619.0	Mm.445911	NM_020268	ENSMUSG00000063177	Klk1b27	Gk27|Klk21l|Klk27|mGK-27	kallikrein 1-related peptidase b27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-156468692-6	chr1	156468563	156468763	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009230, intron 1 of 15)	(CA)n|Simple_repeat|Simple_repeat	5665.0	NM_009230	20652.0	Mm.28099	NM_009230	ENSMUSG00000026600	Soat1	8430426K15Rik|ACAT-1|AW550831|Acact|ald|hid	sterol O-acyltransferase 1	protein-coding	2.82171533983547	2.78897541453899	2.5895319027683	2.51891389352141	2.84418652916454	2.27062269896718	2.02232311920411	2.82291290545606	-0.281036610573491	0.708214705796839	0.998431161219273
Merged-chr11-49253249-3	chr11	49253161	49253361	+	975.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110148, intron 3 of 3)	MLT1G3|LTR|ERVL-MaLR	2709.0	NM_001110150	17308.0	Mm.196933	NM_010794	ENSMUSG00000020346	Mgat1	Mgat-1	mannoside acetylglucosaminyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-64013737-3	chr9	64013616	64013816	+	847.7222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008542, intron 1 of 3)	intron (NM_008542, intron 1 of 3)	8343.0	NM_008542	17130.0	Mm.325757	NM_008542	ENSMUSG00000036867	Smad6	Madh6|b2b390Clo	SMAD family member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-82853999-2	chr18	82853899	82854099	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1898.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-105248209-7	chr4	105248112	105248312	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	90865.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-26444190-3	chr12	26444079	26444279	+	995.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_021384, exon 6 of 6)	3' UTR (NM_021384, exon 6 of 6)	12273.0	NM_021384	58185.0	Mm.24045	NM_021384	ENSMUSG00000020641	Rsad2	2510004L01Rik|Vig1|cig5	radical S-adenosyl methionine domain containing 2	protein-coding	1.46748253489549	1.42845135966617	2.89613253198246	2.02191114588649	2.40709488806277	1.14739103549187	2.78348668739738	1.08483686550032	-0.0621879217055372	0.956314101836325	0.998431161219273
Merged-chr15-97993100-4	chr15	97992996	97993196	+	972.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113515, intron 15 of 52)	intron (NM_001113515, intron 15 of 52)	11628.0	NM_031163	12824.0	Mm.2423	NM_031163	ENSMUSG00000022483	Col2a1	Col2|Col2a|Col2a-1|Del1|Dmm|Lpk|Rgsc856	collagen, type II, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-23233606-4	chr16	23233479	23233679	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252505, intron 1 of 7)	intron (NM_001252505, intron 1 of 7)	7558.0	NM_001252505	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-110442439-1	chr13	110442339	110442539	+	610.0	f0_balb.idr	Intergenic	Intergenic	47395.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-72260268-2	chr2	72260168	72260368	+	725.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25369.0	NM_023057	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-108635709-4	chr12	108635608	108635808	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163396)	promoter-TSS (NM_001163396)	-45.0	NM_001163396	14026.0	Mm.238841	NM_007965	ENSMUSG00000021262	Evl	AI528774|b2b2600Clo	Ena-vasodilator stimulated phosphoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-54735476-4	chr3	54735372	54735572	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025442)	promoter-TSS (NM_025442)	-67.0	NM_025442	66248.0	Mm.144218	NM_025442	ENSMUSG00000036632	Alg5	1500026A19Rik|2600005J22Rik|AV009521|AV170001|AW545564	asparagine-linked glycosylation 5 (dolichyl-phosphate beta-glucosyltransferase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-166360360-4	chr1	166360264	166360464	+	973.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18803.0	NM_030245	27878.0	Mm.100665	NM_030245	ENSMUSG00000026563	Tada1	2900026B15Rik|D1Ertd251e|Staf42|Tada1l	transcriptional adaptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-63615372-2	chr15	63615272	63615472	+	680.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-135764.0	NR_045279	432958.0	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-73209503-4	chr14	73209404	73209604	+	872.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009029, intron 20 of 26)	intron (NM_009029, intron 20 of 26)	-2653.0	NR_030459	751541.0		NR_030459	ENSMUSG00000076121	Mir687	Mirn687|mir-687|mmu-mir-687	microRNA 687	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-10372600-3	chr2	10372528	10372728	+	591.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177386, intron 1 of 22)	CpG	192.0	NM_177386	353282.0	Mm.329991	NM_177386	ENSMUSG00000061186	Sfmbt2	D2Wsu23e|D330030P06Rik	Scm-like with four mbt domains 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4907628-4	chr16	4907524	4907724	+	904.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357062, intron 2 of 17)	intron (NM_001357062, intron 2 of 17)	21524.0	NM_001357061	17237.0	Mm.291326	NM_029657	ENSMUSG00000022517	Mgrn1	2610042J20Rik|mKIAA0544|md|nc	mahogunin, ring finger 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28331553-1	chr7	28331453	28331653	+	545.0	f1_c57bl6.idr	intron (NM_013676, intron 2 of 29)	intron (NM_013676, intron 2 of 29)	7166.0	NM_013676	20924.0	Mm.285906	NM_013676	ENSMUSG00000003435	Supt5	AL033283|AL033321|AU019549|Spt5|Supt5h	suppressor of Ty 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-110940540-2	chr13	110940440	110940640	+	981.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36694.0	NR_131194	102636142.0	Mm.417611	NR_131194		4930526H09Rik	-	RIKEN cDNA 4930526H09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-95857428-2	chr11	95857329	95857529	+	651.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1388.0	NR_045187	73906.0	Mm.399894	NR_045187	ENSMUSG00000086015	4833417C18Rik	-	RIKEN cDNA 4833417C18 gene	ncRNA	1.3126856328434	0.866298339548056	1.3023562698489	0.454522650341263	0.443548403868698	0.474242939887014	0.464378262548147	0.938107910323473	-2.34977686517144	0.185775777701117	1
Merged-chr19-31764447-3	chr19	31764360	31764560	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013833, intron 1 of 17)	CpG	573.0	NM_001013833	19091.0	Mm.381170	NM_011160	ENSMUSG00000052920	Prkg1	AW125416|CGKI|Gm19690|Prkg1b|Prkgr1b	protein kinase, cGMP-dependent, type I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-61416109-4	chr3	61416009	61416209	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51602.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-72195635-4	chr5	72195538	72195738	+	986.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	-7691.0	NR_003966	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-22074263-2	chr15	22074163	22074363	+	584.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4A|LINE|L1	640721.0	NM_001165971	545091.0	Mm.475598	NM_001165971		Hnrnpa1l2-ps2	EG545091|Gm5803	heterogeneous nuclear ribonucleoprotein A1-like 2, pseudogene 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120490583-2	chr8	120490483	120490683	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198671, intron 1 of 15)	intron (NM_198671, intron 1 of 15)	1717.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-50589658-2	chr9	50589558	50589758	+	683.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	14191.0	NM_025848	66925.0	Mm.10406	NM_025848	ENSMUSG00000000171	Sdhd	3110001M13Rik|AVLL5809|C78570|PRO19626	succinate dehydrogenase complex, subunit D, integral membrane protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-98716343-3	chr10	98716237	98716437	+	867.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-198305.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-97992662-4	chr16	97992565	97992765	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4650.0	NM_001362093	245305.0	Mm.148033	NM_001362093		B230307C23Rik	8030444G23Rik|EG245305	RIKEN cDNA B230307C23 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-103186851-4	chr14	103186754	103186954	+	938.2333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207215, intron 49 of 84)	Lx6|LINE|L1	-87288.0	NM_001360342	50789.0	Mm.214746	NM_015822	ENSMUSG00000022124	Fbxl3	AU041772|AW212966|FBK|Fbl3a|Fbxl3a|Ovtm|Play68	F-box and leucine-rich repeat protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-87184057-4	chr6	87183952	87184152	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054041, intron 16 of 17)	intron (NM_054041, intron 16 of 17)	79306.0	NM_001167937	52372.0	Mm.282851	NM_001167937	ENSMUSG00000090891	D6Ertd527e	AU043841	DNA segment, Chr 6, ERATO Doi 527, expressed	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-45032743-4	chr19	45032632	45032832	+	866.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195265, intron 10 of 15)	intron (NM_001195265, intron 10 of 15)	13040.0	NM_001195265	100503041.0	Mm.329877	NM_177605	ENSMUSG00000074818	Pdzd7	9130207N01|EG435601|Pdzk7	PDZ domain containing 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-66437999-4	chr18	66437912	66438112	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20592.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-20382164-4	chr16	20382081	20382281	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013790, intron 12 of 29)	intron (NM_013790, intron 12 of 29)	44213.0	NM_013790	27416.0	Mm.20845	NM_013790	ENSMUSG00000022822	Abcc5	2900011L11Rik|AI132311|Abcc5a|Abcc5b|Mrp5	ATP-binding cassette, sub-family C (CFTR/MRP), member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-31511576-2	chr17	31511476	31511676	+	846.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_021322, intron 1 of 10)	intron (NM_021322, intron 1 of 10)	911.0	NM_021322	57773.0	Mm.143771	NM_021322	ENSMUSG00000024037	Wdr4	AI415180|AI448349|D530049K22Rik|Wh	WD repeat domain 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-74918774-4	chr14	74918696	74918896	+	796.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033439, intron 1 of 19)	intron (NM_001033439, intron 1 of 19)	29081.0	NM_001252132	380916.0	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-35047174-1	chr10	35047074	35047274	+	547.0	f1_balb.idr	Intergenic	L1_Mus2|LINE|L1	563774.0	NM_010237	14302.0	Mm.332432	NM_010237	ENSMUSG00000019779	Frk	BSK|BSK/IYK|C85044|GTK|RAK	fyn-related kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-83266151-4	chr4	83266051	83266251	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027238, intron 3 of 19)	intron (NM_027238, intron 3 of 19)	58038.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	4.60473158453204	5.50962732264091	5.11827094480483	4.51978389319308	5.19207914539659	6.00741211922989	5.35588887106596	5.65926970891122	0.692051033510169	0.0362737624756939	0.270206499699943
Merged-chr8-105367350-2	chr8	105367250	105367450	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081332, intron 15 of 15)	B2_Mm2|SINE|B2	-8031.0	NM_001081333	102075.0	Mm.32034	NM_175321	ENSMUSG00000014782	Plekhg4	4931414L13Rik|AI448583|mFLJ00068	pleckstrin homology domain containing, family G (with RhoGef domain) member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-39614601-4	chr1	39614502	39614702	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36580.0	NM_170597	263764.0	Mm.122091	NM_170597	ENSMUSG00000050967	Creg2	A830098L22Rik	cellular repressor of E1A-stimulated genes 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6335376-2	chr19	6335276	6335476	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001168490, exon 1 of 8)	5' UTR (NM_001168490, exon 1 of 8)	337.0	NM_008583	17283.0	Mm.12917	NM_008583	ENSMUSG00000024947	Men1	AW045611	multiple endocrine neoplasia 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-60787200-4	chr18	60787105	60787305	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12609.0	NM_020600	20044.0	Mm.43778	NM_020600	ENSMUSG00000024608	Rps14	2600014J02Rik|AL023078	ribosomal protein S14	protein-coding	4.01194466815062	2.86958223137413	3.18556819527463	4.59986980411847	4.22655629860665	4.07771096037432	3.53759151524509	4.79255080283942	0.517872431469377	0.338521823745855	0.838823800351667
Merged-chr10-75635846-4	chr10	75635745	75635945	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001162913)	TTS (NM_001162913)	8163.0	NM_001162913	71733.0	Mm.247956	NM_027890	ENSMUSG00000006342	Susd2	1200011D11Rik	sushi domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-12197002-4	chr15	12196912	12197112	+	929.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8016.0	NM_001356498	268783.0	Mm.54460	NM_172958	ENSMUSG00000039458	Mtmr12	3Pap|4932703C11|C730015A02Rik|Pip3ap|mKIAA1682	myotubularin related protein 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-82633355-1	chr4	82633255	82633455	+	766.0	f0_c57.idr	Intergenic	Intergenic	125366.0	NR_137202	102635783.0	Mm.41666	NR_137202		Gm11266	-	predicted gene 11266	ncRNA	1.74939185616557	1.14597235007407	1.90752664063589	2.89970091976332	1.62764736831079	1.15221126435573	2.2851448892902	1.98944798797319	-0.665965603829668	0.547235819039015	0.957755813988636
Merged-chr1-78895954-4	chr1	78895879	78896079	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151519, intron 3 of 3)	MTC|LTR|ERVL-MaLR	79068.0	NM_021342	57814.0	Mm.24386	NM_021342	ENSMUSG00000047330	Kcne4	AW487937|MiRP3	potassium voltage-gated channel, Isk-related subfamily, gene 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-103264683-3	chr11	103264605	103264805	+	956.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016896, intron 1 of 15)	intron (NM_016896, intron 1 of 15)	2696.0	NM_016896	53859.0	Mm.158981	NM_016896	ENSMUSG00000020941	Map3k14	Nik|aly	mitogen-activated protein kinase kinase kinase 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-113469715-4	chr2	113469621	113469821	+	797.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285459, intron 2 of 16)	intron (NM_001285459, intron 2 of 16)	28657.0	NM_001285459	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	2.35116800968718	3.00848751374308	3.09306696787	2.34214096973518	3.33990634037996	1.91034268176338	3.48482843258271	2.7354885899592	0.486422888278416	0.51431191073361	0.946798391882055
Merged-chr1-86214390-4	chr1	86214262	86214462	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027456, intron 19 of 20)	intron (NM_027456, intron 19 of 20)	59582.0	NM_001310702	78795.0	Mm.379264	NM_027456	ENSMUSG00000062590	Armc9	3830422A13Rik|4831423D23Rik|4930438O05Rik|5730415N24Rik	armadillo repeat containing 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-101763217-6	chr13	101763149	101763349	+	775.680542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077495, intron 1 of 15)	intron (NM_001077495, intron 1 of 15)	4968.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-21995792-10	chr10	21995721	21995921	+	896.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001161850, exon 4 of 12)	exon (NM_001161850, exon 4 of 12)	1155.0	NM_011361	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-45746968-4	chr17	45746864	45747064	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152153, intron 1 of 4)	intron (NR_152153, intron 1 of 4)	12458.0	NR_152153	433111.0	Mm.213441	NR_152153	ENSMUSG00000097727	F630040K05Rik	-	RIKEN cDNA F630040K05 gene	ncRNA	3.40578412185921	4.67415928408717	4.39562921849325	3.7523892656637	3.72322283592361	4.29230230573446	2.96026446800943	4.60072045144367	-0.151122980009658	0.773739623900202	0.998431161219273
Merged-chr12-80329093-2	chr12	80328993	80329193	+	603.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	62584.0	NR_037207	100526530.0		NR_037207	ENSMUSG00000105972	Mir1843a	Mir1843|mir-1843a|mmu-mir-1843|mmu-mir-1843a	microRNA 1843a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-6773876-1	chr17	6773776	6773976	+	732.0	f1_c57bl6.idr	intron (NM_009510, intron 1 of 12)	intron (NM_009510, intron 1 of 12)	8904.0	NM_009510	22350.0	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	1.00630333302629	1.71353876265274	1.65380561359699	2.07143275181481	1.0110750728742	2.33322841504436	2.05234048801708	1.61453207218668	0.509385351101031	0.666404769594892	0.992515300319318
Merged-chr19-44318003-2	chr19	44317903	44318103	+	748.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR25B|LTR|ERVK	14832.0	NR_039574	100628619.0		NR_039574	ENSMUSG00000093315	Mir5114	mmu-mir-5114|mu-mir-5114	microRNA 5114	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-35103283-4	chr5	35103179	35103379	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013587, intron 1 of 7)	intron (NM_013587, intron 1 of 7)	2418.0	NM_013587	16976.0	Mm.277661	NM_013587	ENSMUSG00000029103	Lrpap1	AA617339|AI790446|AU042172|C77774|HBP44|RAP	low density lipoprotein receptor-related protein associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-113419916-2	chr13	113419816	113420016	+	907.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	82928.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-90126454-4	chr9	90126352	90126552	+	946.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11632.0	NM_024431	21761.0	Mm.426209	NM_024431	ENSMUSG00000062270	Morf4l1	MORFRG15|MRG15|TEG-189|Tex189|mKIAA4002	mortality factor 4 like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-93055707-4	chr16	93055564	93055764	+	834.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-229590.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-46963447-4	chr7	46963347	46963547	+	982.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4929.0	NM_001040695	54122.0	Mm.1999	NM_016855	ENSMUSG00000043262	Uevld	8430408E05Rik|Attp	UEV and lactate/malate dehyrogenase domains	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-54158549-1	chr6	54158449	54158649	+	606.0	f1_balb.idr	intron (NM_001163640, intron 1 of 12)	intron (NM_001163640, intron 1 of 12)	-106309.0	NM_001311133	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-103934873-4	chr2	103934779	103934979	+	774.549988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23116.0	NM_001142337	16909.0	Mm.29266	NM_008505	ENSMUSG00000032698	Lmo2	Rbtn-2|Rbtn2|Rhom-2|Ttg2	LIM domain only 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-56622462-4	chr18	56622379	56622579	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34131.0	NM_026099	67343.0	Mm.87057	NM_026099	ENSMUSG00000032900	Tex43	1700065I17Rik|Tseg7	testis expressed 43	protein-coding	-0.151591052260365	-0.130940799197888	0.714739633291343	-0.142844897156857	-0.150282248982373	-0.12944136653855	0.729351554324659	-0.141931488452262	0.041083046276385	0.986412301813541	1
Merged-chr13-99190801-2	chr13	99190701	99190901	+	890.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001004149, intron 1 of 4)	intron (NM_001004149, intron 1 of 4)	5978.0	NM_001004149	238803.0	Mm.343207	NM_001004149	ENSMUSG00000050919	Zfp366	DC-SCRIPT|Znf366	zinc finger protein 366	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-107149187-2	chr3	107149087	107149287	+	966.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33956.0	NM_001081140	242151.0	Mm.245155	NM_001081140	ENSMUSG00000042861	Kcna10	Gm1962|Kcna8|Kv1.8	potassium voltage-gated channel, shaker-related subfamily, member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80150132-2	chr10	80150032	80150232	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_021565, exon 2 of 9)	exon (NM_021565, exon 2 of 9)	450.0	NM_001305799	59090.0	Mm.143813	NM_021565	ENSMUSG00000035621	Midn	3000003C15Rik	midnolin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3929780-4	chr4	3929682	3929882	+	995.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019969, intron 1 of 5)	intron (NM_019969, intron 1 of 5)	8623.0	NM_019969	56711.0	Mm.331467	NM_019969	ENSMUSG00000003282	Plag1	-	pleiomorphic adenoma gene 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117180471-2	chr11	117180371	117180571	+	623.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19190.0	NM_001113486	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-110774899-2	chr7	110774799	110774999	+	752.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009667, intron 1 of 14)	intron (NM_009667, intron 1 of 14)	2295.0	NM_009667	11717.0	Mm.3238	NM_009667	ENSMUSG00000005686	Ampd3	-	adenosine monophosphate deaminase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26540047-4	chr17	26539953	26540153	+	867.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB1|LINE|L1	-21459.0	NM_026170	67458.0	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	4.05701994219728	2.13799612100001	2.97183473818489	3.00396495014997	3.95104282620874	4.23187622610003	4.15537122417796	4.27758366436019	1.30696275916644	0.0213912960588412	0.187337788404363
Merged-chr7-35057252-4	chr7	35057162	35057362	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009884)	promoter-TSS (NM_009884)	-696.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122678494-6	chr8	122678332	122678532	+	748.377808	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177289)	promoter-TSS (NM_177289)	-257.0	NM_177289	12398.0	Mm.194339	NM_009824	ENSMUSG00000006362	Cbfa2t3	A630044F12Rik|AI465270|AW229127|Cbfa2t3h|ETO-2|Eto2|MTGR2	core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human)	protein-coding	-1.05877568042897	-1.03501312238488	-1.04817210678232	-1.05426068996071	-1.05810152525527	-1.03216151557194	-0.188696606725984	-1.05378786495764	3.16074139804981	0.330468818528456	1
Merged-chr3-37723319-2	chr3	37723219	37723419	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198657, intron 1 of 2)	intron (NM_198657, intron 1 of 2)	1041.0	NM_198657	381438.0	Mm.490549	NM_198657	ENSMUSG00000058174	Gm5148	EG381438	predicted gene 5148	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-25976744-4	chr8	25976709	25976909	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029884)	promoter-TSS (NM_029884)	-65.0	NM_029884	52120.0	Mm.28326	NM_029884	ENSMUSG00000037260	Hgsnat	9430010M12Rik|AW208455|D8Ertd354e|Tmem76	heparan-alpha-glucosaminide N-acetyltransferase	protein-coding	7.70115481536634	7.64970682024807	7.30638090923591	7.10760940406851	7.4785899386917	8.1135915279491	7.8105547771318	7.46058572179135	0.284754568673854	0.118452480952765	0.540158551764431
Merged-chr13-20151760-4	chr13	20151657	20151857	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	61250.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	-0.871559037381726	-0.856638476330222	-0.861583137644455	-0.865283896969569	-0.870614807574855	-0.855415350575532	0.207976872237578	-0.86463319879494	3.89850570063307	0.158045432396183	1
Merged-chr6-5097256-3	chr6	5097158	5097358	+	654.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181595, intron 6 of 15)	intron (NM_181595, intron 6 of 15)	96688.0	NM_011134	18979.0	Mm.237657	NM_011134	ENSMUSG00000002588	Pon1	Pon	paraoxonase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-106908424-4	chr4	106908305	106908505	+	837.962524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-3065.0	NM_198438	72475.0	Mm.195635	NM_023672	ENSMUSG00000061887	Ssbp3	2610021L12Rik|2610200M23Rik|5730488C10Rik|AI854733|AW551939|LAST|SSDP1	single-stranded DNA binding protein 3	protein-coding	1.49722406856635	1.66025423553503	1.84246551662236	1.43317965889683	1.50783392077821	1.67174369418008	1.85648169269278	1.43902923807119	0.0387037204636121	0.970956618435072	0.998431161219273
Merged-chr10-22355172-1	chr10	22355072	22355272	+	707.5	f1_balb.idr	intron (NM_009018, intron 6 of 6)	intron (NM_009018, intron 6 of 6)	-6722.0	NM_020030	56554.0	Mm.458004	NM_020030	ENSMUSG00000078452	Raet1d	RAE-1delta	retinoic acid early transcript delta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-73451755-2	chr2	73451655	73451855	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	2134.0	NM_001289722	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-73356179-3	chr8	73356070	73356270	+	903.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2630.0	NM_010687	16795.0	Mm.324371	NM_010687	ENSMUSG00000004383	Large1	BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd	LARGE xylosyl- and glucuronyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-50379390-4	chr6	50379292	50379492	+	954.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163645, intron 2 of 21)	intron (NM_001163645, intron 2 of 21)	3445.0	NM_027881	71720.0	Mm.44153	NM_027881	ENSMUSG00000029822	Osbpl3	1200014M06Rik|6720421I08Rik|A530055M08|ORP-3|ORP3|OSBP3	oxysterol binding protein-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-91283233-1	chr5	91283133	91283333	+	742.5	f0_balb.idr	promoter-TSS (NR_040428)	promoter-TSS (NR_040428)	-157.0	NR_040428	100503265.0	Mm.125059	NR_040428	ENSMUSG00000107198	Gm19619	-	predicted gene, 19619	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-29918795-2	chr2	29918695	29918895	+	648.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355137, intron 14 of 16)	intron (NM_001355137, intron 14 of 16)	-16614.0	NM_028923	74412.0	Mm.275121	NM_028923	ENSMUSG00000019715	Gle1	4933405K21Rik|AA553313|Gle1l	GLE1 RNA export mediator (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-91682473-4	chr6	91682332	91682532	+	781.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1635.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-35055035-6	chr7	35054949	35055149	+	947.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009884, intron 1 of 1)	intron (NM_009884, intron 1 of 1)	1517.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-72259534-4	chr5	72259434	72259634	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_003966, intron 10 of 22)	intron (NR_003966, intron 10 of 22)	56191.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-5101040-3	chr18	5100938	5101138	+	943.694458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347449, intron 22 of 30)	intron (NM_001347449, intron 22 of 30)	54449.0	NM_001347449	225115.0	Mm.136791	NM_153153	ENSMUSG00000024236	Svil	AU024053|B430302E16Rik	supervillin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-115268085-3	chr6	115267995	115268195	+	727.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111015, intron 10 of 12)	intron (NM_001111015, intron 10 of 12)	-15890.0	NM_001356406	110595.0	Mm.255607	NM_080639	ENSMUSG00000030317	Timp4	Timp-4	tissue inhibitor of metalloproteinase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-83724932-4	chr8	83724829	83725029	+	934.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_106188)	promoter-TSS (NR_106188)	-945.0	NR_106188	102465897.0		NR_106188	ENSMUSG00000098465	Mir1668	Gm27590|mmu-mir-1668	microRNA 1668	ncRNA	3.0956176343395	3.64827508868493	3.05290975443792	3.35107487144891	3.55430530568539	3.89522690498278	2.66721593468675	4.00150302753306	0.496778133969171	0.388459499756873	0.878226007146269
Merged-chr4-122854432-2	chr4	122854332	122854532	+	712.833374	f1_balb.idr|f1_c57bl6.idr	exon (NM_008917, exon 7 of 9)	exon (NM_008917, exon 7 of 9)	18205.0	NM_008917	19063.0	Mm.277719	NM_008917	ENSMUSG00000028657	Ppt1	9530043G02Rik|AA960502|C77813|CLN1|D4Ertd184e|INCL|PPT	palmitoyl-protein thioesterase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-116991565-2	chr2	116991465	116991665	+	980.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	91413.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46742799-3	chr8	46742722	46742922	+	832.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152560, intron 1 of 7)	intron (NR_152560, intron 1 of 7)	3077.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-95367895-4	chr10	95367782	95367982	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	31606.0	NR_045337	69629.0	Mm.250542	NR_045337	ENSMUSG00000100550	2310039L15Rik	A53T-syn|G2-3|PrPsynA53T|Tg(Prnp-SNCA*A53T)23Mkle	RIKEN cDNA 2310039L15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-25133415-4	chr17	25133311	25133511	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011930)	promoter-TSS (NM_011930)	20.0	NM_011930	26373.0	Mm.270587	NM_011930	ENSMUSG00000036636	Clcn7	ClC-7|D17Wsu51e	chloride channel, voltage-sensitive 7	protein-coding	4.61765761308771	4.76913288372719	3.08786658450325	4.38430075942159	3.85612625767399	3.87417038795612	3.8257332667527	3.70751609900443	-0.727855848807111	0.13300043216021	0.570764692507331
Merged-chr11-11774209-4	chr11	11774112	11774312	+	999.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34750.0	NM_021891	60530.0	Mm.236114	NM_021891	ENSMUSG00000035455	Fignl1	-	fidgetin-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124739255-2	chr6	124739155	124739355	+	814.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001077705)	promoter-TSS (NM_001077705)	-546.0	NM_001077705	15170.0	Mm.271799	NM_013545	ENSMUSG00000004266	Ptpn6	70Z-SHP|Hcph|PTPTY-42|Ptp1C|SH-PTP1|SHP-1|hcp|me	protein tyrosine phosphatase, non-receptor type 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-24223789-2	chr10	24223689	24223889	+	838.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_021509, exon 1 of 12)	exon (NM_021509, exon 1 of 12)	272.0	NM_021509	59012.0	Mm.285934	NM_021509	ENSMUSG00000020000	Moxd1	3230402N08Rik|MNCb-5203	monooxygenase, DBH-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119203588-2	chr11	119203488	119203688	+	798.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347625, intron 3 of 11)	intron (NM_001347625, intron 3 of 11)	24911.0	NM_001347625	207592.0	Mm.205263	NM_172443	ENSMUSG00000039976	Tbc1d16	B930087K01|BC026530|Tcd1d16	TBC1 domain family, member 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-57253828-2	chr17	57253728	57253928	+	835.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001242390, intron 5 of 14)	RSINE1|SINE|B4	4377.0	NM_001242389	106628.0	Mm.37368	NM_134125	ENSMUSG00000019487	Trip10	AI646975|Cip4	thyroid hormone receptor interactor 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-155145792-4	chr1	155145695	155145895	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008209, intron 1 of 5)	intron (NM_008209, intron 1 of 5)	1019.0	NM_001355063	15064.0	Mm.7580	NM_008209	ENSMUSG00000026471	Mr1	H2ls	major histocompatibility complex, class I-related	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-63504019-2	chr15	63503919	63504119	+	601.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR18B_MM|LTR|ERVK	-24411.0	NR_045279	432958.0	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-25089709-3	chr8	25089608	25089808	+	678.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031257, intron 1 of 11)	intron (NM_031257, intron 1 of 11)	12103.0	NM_031257	83436.0	Mm.261122	NM_031257	ENSMUSG00000031557	Plekha2	6430512N22Rik|AI851530|AU041791|TAPP2|W91773	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-35769419-4	chr11	35769328	35769528	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145962)	promoter-TSS (NM_145962)	-67.0	NM_145962	211347.0	Mm.255044	NM_145962	ENSMUSG00000018846	Pank3	-	pantothenate kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-116197729-2	chr6	116197629	116197829	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-4355.0	NM_177412	330401.0	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115482726-2	chr5	115482539	115482739	+	787.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_001167691, exon 2 of 5)	exon (NM_001167691, exon 2 of 5)	1658.0	NM_001167691	75387.0	Mm.332616	NM_133760	ENSMUSG00000029524	Sirt4	4930596O17Rik	sirtuin 4	protein-coding	-0.412317044725921	-0.210889051116717	-0.404339521901114	-0.407343142782366	0.225573502590744	-0.0458690767458379	-0.403479848333747	-0.406818820389677	2.6252285007597	0.299508649784729	1
Merged-chr11-82783724-2	chr11	82783624	82783824	+	684.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001291247, exon 2 of 20)	exon (NM_001291247, exon 2 of 20)	2615.0	NM_010716	16882.0	Mm.277136	NM_010716	ENSMUSG00000020697	Lig3	D11Wsu78e	ligase III, DNA, ATP-dependent	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-55787430-2	chr16	55787330	55787530	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34708.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-61333195-2	chr9	61333095	61333295	+	880.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39171.0	NM_001083928	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78325949-4	chr15	78325858	78326058	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007780)	promoter-TSS (NM_007780)	-32.0	NM_007780	12983.0	Mm.235324	NM_007780	ENSMUSG00000071713	Csf2rb	AI848964|AIC2B|Bc|CDw131|Csf2rb1|Csfgmrb|Il3r|Il3rb|Il3rb1|Il5rb	colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage)	protein-coding	1.68701183360728	1.10937393930615	1.08294524597703	1.4466516793639	1.70097008774993	0.920445758229404	1.08878727370308	1.34064192857144	-0.220327651681523	0.864955095297869	0.998431161219273
Merged-chr4-155833989-4	chr4	155833905	155834105	+	987.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_025338)	TTS (NM_025338)	2736.0	NM_025338	66077.0	Mm.28999	NM_025338	ENSMUSG00000065990	Aurkaip1	0610033H09Rik|Aip|Akip|MRP-S38	aurora kinase A interacting protein 1	protein-coding	0.15964933550087	-0.0680911415536423	-0.0722410774733955	0.311331704515925	0.266773316215539	-0.0671518382450894	-0.0713281719859391	0.316778077154471	0.271342402458328	0.901163698492201	1
Merged-chr10-84403503-2	chr10	84403403	84403603	+	714.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001004363, intron 2 of 6)	intron (NM_001004363, intron 2 of 6)	36968.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99432508-3	chr7	99432410	99432610	+	992.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362168, intron 4 of 17)	MIR|SINE|MIR	-33494.0	NM_028145	72184.0	Mm.153585	NM_028145	ENSMUSG00000035298	Klhl35	2810406K13Rik	kelch-like 35	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-59768101-2	chr2	59768001	59768201	+	920.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290659, intron 4 of 25)	intron (NM_001290659, intron 4 of 25)	114505.0	NM_001159636	72137.0	Mm.288734	NM_028118	ENSMUSG00000026988	Wdsub1	1700048E19Rik|2610014F08Rik	WD repeat, SAM and U-box domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-68266524-2	chr12	68266424	68266624	+	748.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	892662.0	NM_009093	20090.0	Mm.379006	NM_009093	ENSMUSG00000034892	Rps29	-	ribosomal protein S29	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-107048459-7	chr8	107048403	107048603	+	998.775513	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_139229)	TTS (NM_139229)	111.0	NM_026513	68023.0	Mm.482335	NM_026513	ENSMUSG00000078931	Pdf	2610019N19Rik	peptide deformylase (mitochondrial)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97548122-3	chr11	97548040	97548240	+	639.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018873, intron 3 of 19)	intron (NM_018873, intron 3 of 19)	26986.0	NM_018873	56013.0	Mm.342665	NM_018873	ENSMUSG00000038453	Srcin1	P140|SNIP|mKIAA1684|p140Cap	SRC kinase signaling inhibitor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-80490786-4	chr18	80490701	80490901	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21134.0	NM_026295	67655.0	Mm.312893	NM_026295	ENSMUSG00000033323	Ctdp1	4930563P03Rik|AW553592	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65541057-2	chr9	65540957	65541157	+	746.875	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	39030.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-155047308-2	chr1	155047208	155047408	+	663.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35956.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-55022892-4	chr13	55022798	55022998	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1513.0	NM_001033245	212032.0	Mm.267479	NM_001033245	ENSMUSG00000025877	Hk3	HK III|HK-III	hexokinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166446057-4	chr2	166445930	166446130	+	971.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1421.0	NR_015558	319684.0	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-105746619-4	chr7	105746518	105746718	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009906, exon 13 of 13)	3' UTR (NM_009906, exon 13 of 13)	-2280.0	NM_020024	24075.0	Mm.274846	NM_020024	ENSMUSG00000043866	Taf10	30kDa|AU041226|TAFII30|Taf2h	TATA-box binding protein associated factor 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-121583846-2	chr8	121583746	121583946	+	826.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5040.0	NM_133765	76454.0	Mm.24829	NM_133765	ENSMUSG00000052934	Fbxo31	1110003O08Rik|2310046N15Rik|Fbx14|Fbxo14	F-box protein 31	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-102017519-7	chr7	102017430	102017630	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010531, intron 2 of 6)	intron (NM_010531, intron 2 of 6)	625.0	NM_010531	16068.0	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-10772448-1	chr17	10772348	10772548	+	566.0	f0_balb.idr	intron (NM_027032, intron 2 of 4)	intron (NM_027032, intron 2 of 4)	67743.0	NM_027032	69310.0	Mm.18889	NM_027032	ENSMUSG00000037196	Pacrg	1700008H23Rik	PARK2 co-regulated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-62822752-2	chr4	62822652	62822852	+	837.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-142822.0	NM_028326	72701.0	Mm.26479	NM_028326	ENSMUSG00000028358	Zfp618	2810031P15Rik|2810040O04Rik|AI415580|AI505139|D430033D05Rik|Nedd10|Znf618|bM257P7.1	zinc finger protein 618	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-80322683-7	chr18	80322521	80322721	+	990.2976070000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001190373, exon 3 of 4)	exon (NM_001190373, exon 3 of 4)	41633.0	NM_001190373	240444.0	Mm.279568	NM_001190373	ENSMUSG00000059852	Kcng2	AA591524	potassium voltage-gated channel, subfamily G, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117583479-2	chr8	117583379	117583579	+	968.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172285, intron 12 of 32)	intron (NM_172285, intron 12 of 32)	85204.0	NM_172285	234779.0	Mm.192699	NM_172285	ENSMUSG00000034330	Plcg2	PLC-gamma-2|PLCgamma2|Plcg-2	phospholipase C, gamma 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5783455-3	chr17	5783355	5783555	+	784.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-15202.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-120364261-3	chr10	120364175	120364375	+	576.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010441, exon 5 of 5)	exon (NM_010441, exon 5 of 5)	-25248.0	NR_040626	320626.0	Mm.446091	NR_040626	ENSMUSG00000090191	9230105E05Rik	-	RIKEN cDNA 9230105E05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-26981220-4	chr8	26981149	26981349	+	797.958313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001101502, exon 2 of 2)	3' UTR (NM_001101502, exon 2 of 2)	3913.0	NM_001110508	353310.0	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-154329532-2	chr3	154329432	154329632	+	562.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010713, intron 1 of 8)	CpG	1028.0	NM_010713	16875.0	Mm.15530	NM_010713	ENSMUSG00000096225	Lhx8	L3|Lhx7	LIM homeobox protein 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-32680317-4	chr9	32680194	32680394	+	977.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB8|LINE|L1	-15748.0	NM_011808	23871.0	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-102673746-4	chr15	102673653	102673853	+	890.81665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1887.0	NR_030460	751542.0		NR_030460	ENSMUSG00000076009	Mir688	Mirn688|mmu-mir-688	microRNA 688	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88447812-2	chr3	88447712	88447912	+	873.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_013658, intron 10 of 14)	intron (NM_013658, intron 10 of 14)	-6861.0	NR_105978	102465611.0		NR_105978	ENSMUSG00000098655	Mir7011	Gm27677|mmu-mir-7011	microRNA 7011	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-87679233-2	chr10	87679133	87679333	+	617.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	157438.0	NM_008777	18478.0	Mm.263539	NM_008777	ENSMUSG00000020051	Pah	AW106920	phenylalanine hydroxylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-67424207-3	chr9	67424151	67424351	+	785.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081242, intron 2 of 57)	intron (NM_001081242, intron 2 of 57)	135452.0	NM_001081242	70549.0	Mm.33645	NM_027458	ENSMUSG00000052698	Tln2	5730421P04Rik|AI507121|AI787438|AL118320|mKIAA0320	talin 2	protein-coding	-0.953721354153451	-1.41025554057125	-1.42001056191158	-1.42802362688808	-1.44024889148474	-1.40814158675276	-1.41780223890411	-1.42658929208844	-2.11310844444413	0.543369238581748	1
Merged-chr15-62041328-4	chr15	62041213	62041413	+	911.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132746, intron 1 of 6)	intron (NR_132746, intron 1 of 6)	2056.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-8410249-1	chr6	8410149	8410349	+	652.0	f0_balb.idr	intron (NM_001302353, intron 4 of 4)	intron (NM_001302353, intron 4 of 4)	98912.0	NR_040452	320312.0	Mm.374890	NR_040452	ENSMUSG00000087305	A430035B10Rik	2810488G03Rik	RIKEN cDNA A430035B10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-45545877-2	chr19	45545777	45545977	+	747.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14687.0	NM_001330506	56626.0	Mm.46509	NM_020032	ENSMUSG00000025218	Poll	1110003P06Rik|AV007317	polymerase (DNA directed), lambda	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-64927608-4	chr1	64927505	64927705	+	955.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039493, intron 2 of 7)	intron (NM_001039493, intron 2 of 7)	29219.0	NM_001039493	241075.0	Mm.239534	NM_175509	ENSMUSG00000051344	Plekhm3	9430067K14Rik|A230102O09Rik|AI449570|DAPR|Plekhm1l	pleckstrin homology domain containing, family M, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-63898901-4	chr11	63898772	63898972	+	920.31665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018805, intron 1 of 1)	intron (NM_018805, intron 1 of 1)	23412.0	NM_018805	54710.0	Mm.274426	NM_018805	ENSMUSG00000070407	Hs3st3b1	3-OST-3B|3OST3B1|3Ost3b|AU041882|AW536289|Hs3st3b|m3-OST-3B	heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-89256743-4	chr9	89256640	89256840	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	45356.0	NM_001359993	107885.0	Mm.486274	NM_026829	ENSMUSG00000066442	Mthfs	1110034I12Rik|2310020H23Rik|AI119695	5, 10-methenyltetrahydrofolate synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-23660608-2	chr11	23660508	23660708	+	550.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023651, intron 1 of 3)	Lx8|LINE|L1	-5066.0	NM_028956	74467.0	Mm.29536	NM_028304	ENSMUSG00000020280	Pus10	2810013G11Rik|4933435A13Rik|AU014648|C77560|Ccdc139	pseudouridylate synthase 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-106027007-3	chr12	106026916	106027116	+	809.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029843, intron 1 of 13)	intron (NM_001029843, intron 1 of 13)	16753.0	NM_001029843	22367.0	Mm.2981	NM_011705	ENSMUSG00000021115	Vrk1	51PK	vaccinia related kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-102411280-2	chr15	102411180	102411380	+	604.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013672, intron 3 of 5)	B3A|SINE|B2	4964.0	NM_013672	20683.0	Mm.4618	NM_013672	ENSMUSG00000001280	Sp1	1110003E12Rik|AA450830|AI845540|Sp1-1	trans-acting transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-18498758-4	chr16	18498658	18498858	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023120)	promoter-TSS (NM_023120)	45.0	NM_001285491	13972.0	Mm.236139	NM_023120	ENSMUSG00000000884	Gnb1l	ESTM55|Gm16314|Me49f07|Wdr14|Wdvcf	guanine nucleotide binding protein (G protein), beta polypeptide 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-80709096-2	chr18	80708996	80709196	+	779.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164112)	promoter-TSS (NM_001164112)	-923.0	NM_001164112	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-37430773-4	chr9	37430659	37430859	+	883.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164767, intron 1 of 27)	intron (NM_001164767, intron 1 of 27)	2416.0	NM_001164767	19649.0	Mm.212826	NM_011248	ENSMUSG00000032128	Robo3	Rbig1|Rig-1|Rig1|Robo3a|Robo3b	roundabout guidance receptor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-56718302-2	chr19	56718202	56718402	+	950.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4070.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4625638-4	chr19	4625528	4625728	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023131)	promoter-TSS (NM_023131)	-11.0	NM_023131	19671.0	Mm.391143	NM_023131	ENSMUSG00000024889	Rce1	D19Ertd283e|D19Ertd98e	Ras converting CAAX endopeptidase 1	protein-coding	4.5683822315899	3.22964581816243	3.97923644481711	4.67728647126759	4.7925488730109	3.3893329521617	3.4931718537728	5.21763416734889	0.296858527875902	0.579639310167872	0.965985075107763
Merged-chr1-191041946-2	chr1	191041846	191042046	+	661.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029336, intron 2 of 2)	ORR1D2|LTR|ERVL-MaLR	5124.0	NM_029336	75558.0	Mm.383398	NM_029336	ENSMUSG00000057072	Spata45	1700022P22Rik	spermatogenesis associated 45	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-39731950-4	chr10	39731825	39732025	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_038037)	promoter-TSS (NR_038037)	82.0	NR_038037	327744.0	Mm.295265	NM_183198	ENSMUSG00000087177	E130307A14Rik	-	RIKEN cDNA E130307A14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-37427342-4	chr6	37427234	37427434	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178661, intron 1 of 11)	intron (NM_178661, intron 1 of 11)	14814.0	NM_178661	208647.0	Mm.169929	NM_178661	ENSMUSG00000038648	Creb3l2	BBF2H7|C530025K05Rik|SCIRR69	cAMP responsive element binding protein 3-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-110980448-3	chr11	110980336	110980536	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010604, intron 1 of 1)	intron (NM_010604, intron 1 of 1)	12403.0	NM_001252207	16517.0	Mm.30176	NM_010604	ENSMUSG00000051497	Kcnj16	6430410F18Rik|AI132396|Kir5.1	potassium inwardly-rectifying channel, subfamily J, member 16	protein-coding	2.84169374214917	2.96133042428183	2.85837534717329	2.99997675996314	3.13315050788911	3.10811542697429	4.21168758064845	3.51523426607376	1.08441208145896	0.0730247670644705	0.408271740558955
Merged-chr4-116627500-4	chr4	116627405	116627605	+	998.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001284229)	promoter-TSS (NM_001284229)	-8.0	NM_001284229	50927.0	Mm.257181	NM_016777	ENSMUSG00000028693	Nasp	5033430J04Rik|AI131596|AI317140|D4Ertd767e|Epcs32|Nasp-T	nuclear autoantigenic sperm protein (histone-binding)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-26461396-2	chr5	26461296	26461496	+	571.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_029445, intron 4 of 4)	MLT1D|LTR|ERVL-MaLR	31918.0	NR_029445	75942.0	Mm.50087	NR_029445	ENSMUSG00000029044	4930584F24Rik	1700001J09Rik|4930522C06Rik	RIKEN cDNA 4930584F24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139710047-1	chr5	139709947	139710147	+	560.0	f1_c57bl6.idr	intron (NM_174850, intron 12 of 16)	intron (NM_174850, intron 12 of 16)	26286.0	NM_174850	231830.0	Mm.240510	NM_174850	ENSMUSG00000036718	Micall2	A930021H16Rik|JRAB|MICAL-L2|mFLJ00139	MICAL-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-76763938-4	chr16	76763840	76764040	+	914.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155453, intron 1 of 3)	intron (NR_155453, intron 1 of 3)	15152.0	NR_155453	102632814.0		NR_155453	ENSMUSG00000109333	Gm30790	Gm45028	predicted gene, 30790	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-70620292-4	chr18	70620201	70620401	+	940.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010773, intron 5 of 6)	intron (NM_010773, intron 5 of 6)	52009.0	NM_010773	17191.0	Mm.322	NM_010773	ENSMUSG00000024513	Mbd2	MBD2a	methyl-CpG binding domain protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-67473183-3	chr4	67473062	67473262	+	723.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2B2|LINE|L1	645611.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-80815943-2	chr17	80815843	80816043	+	715.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-80850.0	NR_131128	320784.0	Mm.474182	NR_131127	ENSMUSG00000112121	C230072F16Rik	-	RIKEN cDNA C230072F16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-26760599-4	chr10	26760505	26760705	+	680.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11907.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-68368033-3	chr2	68367939	68368139	+	731.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016866, intron 7 of 17)	intron (NM_016866, intron 7 of 17)	103942.0	NM_016866	53416.0	Mm.198414	NM_016866	ENSMUSG00000027030	Stk39	AW227544|AW556857|DCHT|RF005|Rnl5|SPAK	serine/threonine kinase 39	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-36590086-4	chr16	36590002	36590202	+	976.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE-int|LTR|ERVL-MaLR	-27968.0	NM_013803	12374.0	Mm.103619	NM_013803	ENSMUSG00000051980	Casr	CaR|Gprc2a	calcium-sensing receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36735027-4	chr18	36734918	36735118	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028036)	promoter-TSS (NM_028036)	-52.0	NM_028036	71983.0	Mm.135188	NM_028036	ENSMUSG00000006850	Tmco6	2410015B03Rik	transmembrane and coiled-coil domains 6	protein-coding	3.01490284186976	2.86929683868378	3.17891931196128	2.43107901077446	3.24739697991056	3.54825432176267	2.91079179681701	2.58356649953894	0.389408374926054	0.552967722618876	0.959564390599126
Merged-chr10-70181592-4	chr10	70181511	70181711	+	957.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111121, intron 6 of 8)	intron (NM_001111121, intron 6 of 8)	-23053.0	NM_001304739	69563.0	Mm.64672	NM_001304739	ENSMUSG00000019933	Mrln	2310015B20Rik|Linc-RAM|Mln	myoregulin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-60125328-4	chr2	60125236	60125436	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001182, intron 1 of 35)	intron (NM_001001182, intron 1 of 35)	404.0	NM_001001182	407823.0	Mm.228071	NM_001001182	ENSMUSG00000026987	Baz2b	5830435C13Rik|BC053917|D2Ertd794e	bromodomain adjacent to zinc finger domain, 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45444976-2	chr7	45444876	45445076	+	789.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030678, intron 10 of 15)	intron (NM_030678, intron 10 of 15)	10137.0	NM_030678	14936.0	Mm.275654	NM_030678	ENSMUSG00000003865	Gys1	Gys3|MGS	glycogen synthase 1, muscle	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-4679775-2	chr8	4679675	4679875	+	806.299988	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TATATG)n|Simple_repeat|Simple_repeat	66605.0	NM_145591	233987.0	Mm.102799	NM_145591	ENSMUSG00000058748	Zfp958	-	zinc finger protein 958	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-79114415-4	chr3	79114320	79114520	+	848.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001099624, intron 1 of 23)	L2c|LINE|L2	30467.0	NM_001310536	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	2.62214690034453	1.91582473997849	2.84960844958818	2.07223858605406	1.37256276386057	2.23116153952323	1.47489061844902	1.4340303015345	-1.92098090419139	0.0501579905279604	0.326481972985203
Merged-chr3-51563025-1	chr3	51562925	51563125	+	542.0	f1_c57bl6.idr	intron (NR_033624, intron 1 of 4)	B3A|SINE|B2	-2202.0	NM_080793	73251.0	Mm.192111	NM_080793	ENSMUSG00000037111	Setd7	1600028F23Rik|H3K4MT|KMT7|Set7|Set7/9|mKIAA1717	SET domain containing (lysine methyltransferase) 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-59340177-1	chr9	59340077	59340277	+	543.0	f0_c57.idr	intron (NR_153195, intron 5 of 15)	intron (NR_153195, intron 5 of 15)	13331.0	NM_001359558	102774.0	Mm.200714	NM_175325	ENSMUSG00000025235	Bbs4	AW537059|AW742241|D9Ertd464e	Bardet-Biedl syndrome 4 (human)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-44295962-4	chr19	44295858	44296058	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009128, intron 2 of 5)	intron (NM_009128, intron 2 of 5)	2282.0	NM_009128	20250.0	Mm.487021	NM_009128	ENSMUSG00000025203	Scd2	Mir5114|Scd-2|mir-5114|swty	stearoyl-Coenzyme A desaturase 2	protein-coding	3.37298197621915	2.35912926368634	2.44048228712805	2.37224025984596	3.04264140953416	2.9381123650967	2.94582548666917	3.11590647599646	0.512217773836039	0.463648076171265	0.922064436622467
Merged-chr3-15999692-3	chr3	15999581	15999781	+	609.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081687, intron 1 of 3)	RLTR45|LTR|ERVK	6651.0	NM_001081687	381484.0	Mm.217376	NM_001081687	ENSMUSG00000078780	Gm5150	-	predicted gene 5150	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-9708806-2	chr10	9708706	9708906	+	890.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	24084.0	NR_038036	620417.0	Mm.378085	NR_038036	ENSMUSG00000111901	Gm6150	-	predicted gene 6150	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-58204786-4	chr9	58204728	58204928	+	978.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161541)	promoter-TSS (NM_001161541)	-509.0	NM_001161541	320563.0	Mm.186499	NM_177193	ENSMUSG00000051243	Islr2	B930052A04Rik|Linx|Mbu-3|mKIAA1465	immunoglobulin superfamily containing leucine-rich repeat 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-29694270-4	chr11	29694125	29694325	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194051, intron 1 of 8)	intron (NM_194051, intron 1 of 8)	451.0	NM_194051	68585.0	Mm.192580	NM_024226	ENSMUSG00000020458	Rtn4	1110020G17Rik|AA407876|AA409940|AA960376|ASY|C130026I10Rik|NOGO|NSP-CL|NgA|Nogo-A|Nogo-B|Nogo-C|mKIAA0886|mKIAA4153	reticulon 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-41484156-3	chr13	41484071	41484271	+	899.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111324, intron 1 of 7)	intron (NM_001111324, intron 1 of 7)	3189.0	NM_001111324	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124814166-4	chr6	124814063	124814263	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001326594)	TTS (NM_001326594)	133.0	NM_009415	21991.0	Mm.4222	NM_009415	ENSMUSG00000023456	Tpi1	AI255506|TIM|Tpi|Tpi-1	triosephosphate isomerase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-73459367-4	chr13	73459337	73459537	+	839.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7946.0	NM_145376	210992.0	Mm.284649	NM_145376	ENSMUSG00000021608	Lpcat1	2900035H07Rik|Aytl2|BB137372|BC005662|C87117|LPCAT|rd11	lysophosphatidylcholine acyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67117063-2	chr10	67116963	67117163	+	805.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10195.0	NM_207221	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-88932319-1	chr18	88932219	88932419	+	786.666687	f0_balb.idr	Intergenic	Intergenic	-38112.0	NM_018821	54607.0	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-61685345-1	chr8	61685245	61685445	+	546.0	f1_c57bl6.idr	intron (NM_001293772, intron 9 of 21)	ORR1A4|LTR|ERVL-MaLR	74753.0	NM_001293773	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-98952316-2	chr10	98952216	98952416	+	669.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359507, intron 1 of 21)	intron (NM_001359507, intron 1 of 21)	37164.0	NM_026482	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-32690110-3	chr5	32690006	32690206	+	794.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56236.0	NM_001347332	320951.0	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-106945823-2	chr1	106945723	106945923	+	576.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199213, intron 1 of 7)	MLT1C|LTR|ERVL-MaLR	6866.0	NM_001199213	71869.0	Mm.321740	NM_027971	ENSMUSG00000059956	Serpinb12	2300003F07Rik|4833409F13Rik	serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), member 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-13287973-4	chr8	13287901	13288101	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172282)	promoter-TSS (NM_172282)	-12.0	NM_172282	234076.0	Mm.219813	NM_172282	ENSMUSG00000038497	Tmco3	B230339H12Rik|C87304	transmembrane and coiled-coil domains 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111694533-4	chr12	111694402	111694602	+	985.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16397.0	NM_177374	328162.0	Mm.425747	NM_177374	ENSMUSG00000060950	Trmt61a	6720458F09Rik|AI606093|Gcd14|Trm61	tRNA methyltransferase 61A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-99084386-4	chr12	99084287	99084487	+	863.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	78421.0	NR_038130	67639.0	Mm.87374	NR_038130	ENSMUSG00000113210	4930474N09Rik	-	RIKEN cDNA 4930474N09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5841705-6	chr19	5841627	5841827	+	959.388916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_003513)	TTS (NR_003513)	3751.0	NR_131212	66961.0	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-53570901-1	chr5	53570801	53571001	+	560.0	f0_balb.idr	intron (NM_001080928, intron 1 of 10)	intron (NM_001080928, intron 1 of 10)	15122.0	NM_001080928	19664.0	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127769081-4	chr7	127769016	127769216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198424)	promoter-TSS (NM_198424)	-699.0	NM_198424	269999.0	Mm.36852	NM_198424	ENSMUSG00000043964	Orai3	9930124N15|BC061259|Tmem142c	ORAI calcium release-activated calcium modulator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10688731-4	chr19	10688619	10688819	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361963)	promoter-TSS (NM_001361963)	-16.0	NM_181403	107305.0	Mm.19091	NM_181403	ENSMUSG00000048832	Vps37c	5730409F24Rik|AU042646	vacuolar protein sorting 37C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-97769371-6	chr1	97769285	97769485	+	986.444458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026250)	promoter-TSS (NM_026250)	707.0	NM_173760	227399.0	Mm.220817	NM_173760	ENSMUSG00000040648	Ppip5k2	AW555814|Cfap160|D330021B20|Hisppd1|Vip2|mKIAA0433	diphosphoinositol pentakisphosphate kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-98715689-2	chr1	98715589	98715789	+	555.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	294565.0	NM_027584	70866.0	Mm.389164	NM_027584	ENSMUSG00000026336	Slco6d1	4921511I05Rik	solute carrier organic anion transporter family, member 6d1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-28262482-2	chr6	28262388	28262588	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_001081678)	promoter-TSS (NM_001081678)	-887.0	NM_001081678	627049.0	Mm.84441	NM_001081678	ENSMUSG00000039841	Zfp800	AA407452|Znf800	zinc finger protein 800	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-85288567-4	chr13	85288477	85288677	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_145452, exon 1 of 25)	exon (NM_145452, exon 1 of 25)	909.0	NM_145452	218397.0	Mm.259653	NM_145452	ENSMUSG00000021549	Rasa1	Gap|RasGAP|Rasa	RAS p21 protein activator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-113225949-2	chr6	113225861	113226061	+	819.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11882.0	NM_001362183	97287.0	Mm.197816	NM_026849	ENSMUSG00000030269	Mtmr14	1110061O04Rik|AW553738|C76151	myotubularin related protein 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-61037820-2	chr14	61037733	61037933	+	703.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_013869, intron 1 of 9)	CpG	154.0	NM_001164155	29820.0	Mm.281356	NM_013869	ENSMUSG00000060548	Tnfrsf19	AL023044|AW123854|TAJ|TAJ-ALPHA|TRADE|Troy	tumor necrosis factor receptor superfamily, member 19	protein-coding	0.487462904948618	0.100888644387804	0.093910606406835	0.663007808726948	0.080786984693943	0.102455139437154	1.01220854248258	0.0894421739767625	0.268612331322728	0.899740376779726	1
Merged-chr2-22822488-4	chr2	22822393	22822593	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019456, intron 3 of 13)	intron (NM_019456, intron 3 of 13)	48166.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-88682232-7	chr10	88682181	88682381	+	986.285706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011461, intron 1 of 5)	B1_Mus1|SINE|Alu	742.0	NM_011461	20728.0	Mm.21642	NM_011461	ENSMUSG00000004359	Spic	AU019198|C76795|Prf|Spi-C	Spi-C transcription factor (Spi-1/PU.1 related)	protein-coding	2.01248579740677	1.5857076674775	1.90725978605425	2.33035436454328	2.54258282840733	2.13836833636288	2.5999150671106	1.512955750566	0.701879971293426	0.454090087250568	0.919120493489568
Merged-chr2-80176186-2	chr2	80176086	80176286	+	715.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46528.0	NM_001355140	18573.0	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-17681984-2	chr12	17681884	17682084	+	848.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-8825.0	NM_001361645	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-14881196-1	chr3	14881096	14881296	+	564.0	f0_balb.idr	Intergenic	Intergenic	-5073.0	NM_001357334	12349.0	Mm.1186	NM_009801	ENSMUSG00000027562	Car2	AI131712|CAII|Ca2|Car-2|Ltw-5|Lvtw-5	carbonic anhydrase 2	protein-coding	2.32623935631139	2.2822104294906	1.07693723611974	1.29181856942143	1.4222048770102	2.49141943874973	1.33459661388336	1.80157403275674	-0.0577322850439633	0.959168797112643	0.998431161219273
Merged-chr7-116443485-4	chr7	116443394	116443594	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011083)	promoter-TSS (NM_011083)	-36.0	NM_011083	18704.0	Mm.3810	NM_011083	ENSMUSG00000030660	Pik3c2a	Cpk-m|PI3KC2	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-105198653-3	chr14	105198545	105198745	+	774.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21318.0	NM_134077	74213.0	Mm.474531	NM_134077	ENSMUSG00000022119	Rbm26	1700009P03Rik|AI447318|C230097K14Rik|C86225|MLZ-393|Pro1777|Se70-2	RNA binding motif protein 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-65740507-4	chr17	65740412	65740612	+	988.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133685, intron 1 of 6)	intron (NM_133685, intron 1 of 6)	32240.0	NM_133685	106572.0	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-115716424-4	chr3	115716326	115716526	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1371.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	2.0912647129748	2.05297827002638	2.73943418524902	2.40963647613763	1.99139440541741	1.8901620939411	2.00296946613995	2.51380455754227	-0.552337081682669	0.521830229940062	0.947836760490745
Merged-chr9-104164201-1	chr9	104164101	104164301	+	587.0	f1_c57bl6.idr	intron (NM_001359740, intron 52 of 56)	intron (NM_001359740, intron 52 of 56)	-37558.0	NM_145700	252837.0	Mm.269254	NM_145700	ENSMUSG00000079355	Ackr4	A630091E18Rik|CCBP2|CCR11|CCX-CKR|CCX-CKR1|Ccrl1|Cmkbrl1|PPR1|VSHK1	atypical chemokine receptor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-122824674-4	chr6	122824592	122824792	+	816.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021899, intron 1 of 10)	intron (NM_021899, intron 1 of 10)	4508.0	NM_021899	60611.0	Mm.87142	NM_021899	ENSMUSG00000003154	Foxj2	Fhx	forkhead box J2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-52444608-1	chr3	52444508	52444708	+	543.0	f0_balb.idr	Intergenic	Intergenic	-72356.0	NR_153344	102631981.0	Mm.394225	NR_153344		Gm30173	-	predicted gene, 30173	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123025434-4	chr5	123025332	123025532	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175423, intron 1 of 1)	intron (NM_175423, intron 1 of 1)	10358.0	NM_175423	109305.0	Mm.218582	NM_175423	ENSMUSG00000049686	Orai1	D730049H07Rik|Tmem142a|orai-1	ORAI calcium release-activated calcium modulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-129200178-4	chr6	129200053	129200253	+	850.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	19538.0	NM_053109	93694.0	Mm.197536	NM_053109	ENSMUSG00000030157	Clec2d	Clr-b|Clrb|Ocil	C-type lectin domain family 2, member d	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69982001-2	chr11	69981901	69982101	+	692.625	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018740)	promoter-TSS (NM_018740)	-766.0	NM_018740	54351.0	Mm.13430	NM_018740	ENSMUSG00000018565	Elp5	Derp6|Rai12	elongator acetyltransferase complex subunit 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-116980005-4	chr2	116979842	116980042	+	929.841675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	79790.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-109169302-4	chr3	109169186	109169386	+	794.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_172685)	TTS (NM_172685)	46137.0	NM_172685	229731.0	Mm.33574	NM_172685	ENSMUSG00000040322	Slc25a24	2610016M12Rik	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-50384553-4	chr6	50384463	50384663	+	866.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163645, intron 2 of 21)	ORR1E|LTR|ERVL-MaLR	-1726.0	NM_027881	71720.0	Mm.44153	NM_027881	ENSMUSG00000029822	Osbpl3	1200014M06Rik|6720421I08Rik|A530055M08|ORP-3|ORP3|OSBP3	oxysterol binding protein-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118983634-2	chr11	118983534	118983734	+	608.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4547.0	NM_001359574	238011.0	Mm.244114	NM_001030291	ENSMUSG00000046697	Enpp7	Alk-SMase|Gm254	ectonucleotide pyrophosphatase/phosphodiesterase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80177636-3	chr7	80177544	80177744	+	847.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9197.0	NM_013659	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	0.530219156571479	0.475761995891492	1.04160725699003	0.268945009550953	0.648772013737206	0.645545905951595	0.27564919890685	0.269856757216531	-0.886073653977299	0.625422642696123	1
Merged-chr8-46888751-4	chr8	46888608	46888808	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-98179.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-63738220-4	chr9	63738111	63738311	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016769, intron 1 of 8)	MTEa|LTR|ERVL-MaLR	19783.0	NM_016769	17127.0	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-155631707-2	chr3	155631607	155631807	+	684.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-344647.0	NR_040553	329780.0	Mm.119000	NR_040553	ENSMUSG00000104553	9330178D15Rik	9330178D15	RIKEN cDNA 9330178D15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-41598465-2	chr10	41598365	41598565	+	788.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001358562, exon 30 of 48)	exon (NM_001358562, exon 30 of 48)	30449.0	NR_045341	70538.0	Mm.399807	NR_045341	ENSMUSG00000091370	5730435O14Rik	-	RIKEN cDNA 5730435O14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-51921921-4	chr11	51921827	51922027	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-45704.0	NM_029976	52626.0	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-52003727-4	chr11	52003638	52003838	+	805.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153785)	promoter-TSS (NM_153785)	-483.0	NM_001166657	213084.0	Mm.280557	NM_153785	ENSMUSG00000020389	Cdkl3	AI852479|B230379H01Rik	cyclin-dependent kinase-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-125293655-2	chr5	125293555	125293755	+	879.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205083, intron 7 of 10)	MLT1D|LTR|ERVL-MaLR	47439.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-85560127-4	chr8	85560039	85560239	+	853.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-4868.0	NM_019794	56445.0	Mm.475573	NM_019794	ENSMUSG00000031701	Dnaja2	1500017M13Rik|2010206B19Rik|DNAJ|DNJ3|Dnaj3|HIRIP4|PRO3015|mDj3	DnaJ heat shock protein family (Hsp40) member A2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35257595-4	chr17	35257497	35257697	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-5497.0	NM_010380	14964.0	Mm.439675	NM_010380	ENSMUSG00000073411	H2-D1	H-2D|H2-D	histocompatibility 2, D region locus 1	protein-coding	4.09990015990907	4.46373022641513	4.19719909867199	5.12330145930836	5.1440844461602	4.15869754808282	4.29240295141121	4.8927253668971	0.199936039141976	0.630415101164537	0.981462672084773
Merged-chr3-25231008-2	chr3	25230908	25231108	+	847.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MEf|LINE|L1	-447002.0	NM_001326288	635702.0	Mm.448351	NM_001326288	ENSMUSG00000102758	Naaladl2	2810043G22Rik|EG635702|Gm1021	N-acetylated alpha-linked acidic dipeptidase-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-88263097-3	chr8	88262990	88263190	+	734.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9313.0	NM_007406	11513.0	Mm.288206	NM_007406	ENSMUSG00000031659	Adcy7	AA407758	adenylate cyclase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96556005-2	chr3	96555905	96556105	+	632.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040409, exon 4 of 4)	non-coding (NR_040409, exon 4 of 4)	-1952.0	NM_023719	56338.0	Mm.410189	NM_023719	ENSMUSG00000038393	Txnip	1200008J08Rik|AA682105|Hyplip1|THIF|Tbp-2|VDUP1	thioredoxin interacting protein	protein-coding	-1.23826193677681	-1.21241040182355	-1.22270105026776	-0.934241458926562	-1.23783648736863	-1.21018037537722	-1.22037147302458	-0.929982742503718	0.0323590357436516	0.9924297640193	1
Merged-chr3-96708506-4	chr3	96708420	96708620	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030094)	promoter-TSS (NM_030094)	40.0	NM_001162925	78373.0	Mm.423186	NM_030094	ENSMUSG00000028100	Nudt17	2410015C20Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-83631226-2	chr7	83631126	83631326	+	588.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023377)	promoter-TSS (NM_023377)	-791.0	NM_023377	170460.0	Mm.357953	NM_023377	ENSMUSG00000046027	Stard5	2310058G22Rik|AI607880|D7Ertd152e	StAR-related lipid transfer (START) domain containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-84987378-5	chr15	84987285	84987485	+	960.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033273, intron 1 of 9)	intron (NM_001033273, intron 1 of 9)	586.0	NM_001033273	223739.0	Mm.323925	NM_001033273	ENSMUSG00000036046	5031439G07Rik	AW554572|mKIAA0930	RIKEN cDNA 5031439G07 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-19584858-2	chr4	19584758	19584958	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025476, intron 2 of 9)	intron (NM_025476, intron 2 of 9)	9792.0	NM_025476	66302.0	Mm.440686	NM_025476	ENSMUSG00000028229	Rmdn1	Fam82b|RMD-1	regulator of microtubule dynamics 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-119238896-2	chr4	119238796	119238996	+	870.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019782, intron 5 of 15)	intron (NM_019782, intron 5 of 15)	5067.0	NM_001042411	56401.0	Mm.27961	NM_019782	ENSMUSG00000028641	P3h1	2410024C15Rik|Gros1|Lepre1	prolyl 3-hydroxylase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118230150-4	chr11	118230045	118230245	+	984.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	-17403.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-53438501-2	chr10	53438401	53438601	+	563.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28619.0	NR_152767	102640074.0	Mm.412957	NR_152767		Gm36229	-	predicted gene, 36229	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-105531157-3	chr5	105531063	105531263	+	781.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133897, intron 1 of 3)	intron (NM_133897, intron 1 of 3)	11692.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	2.39660345967211	2.22794915625942	2.15755204888771	2.10110972616505	2.56933111530347	2.24343846294164	1.86376282714036	2.44212974764141	0.211822275382604	0.800781273196177	0.998431161219273
Merged-chr3-31414138-4	chr3	31414126	31414326	+	962.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-103907.0	NM_172861	241919.0	Mm.285366	NM_172861	ENSMUSG00000069072	Slc7a14	A930013N06|BC061928	solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152542777-2	chr1	152542677	152542877	+	557.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 9 of 17)	intron (NM_016846, intron 9 of 17)	82440.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-37602442-5	chr19	37602384	37602584	+	783.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175353, intron 17 of 21)	intron (NM_175353, intron 17 of 21)	52066.0	NM_175353	107371.0	Mm.24865	NM_175353	ENSMUSG00000053799	Exoc6	4833405E05Rik|AW413330|C430002C19|Sec15|Sec15l1|hbd|msec15	exocyst complex component 6	protein-coding	-0.243147418139498	-0.363385573046623	0.05462101557432	-0.369602373256411	-0.373393854065696	-0.180182106396729	-0.366129403205086	0.0291139207793514	0.0612363902413531	0.979569797625507	1
Merged-chr19-28679149-2	chr19	28679049	28679249	+	828.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045330, intron 1 of 4)	intron (NR_045330, intron 1 of 4)	925.0	NR_045330	320176.0	Mm.406716	NR_045330	ENSMUSG00000097735	D930032P07Rik	-	RIKEN cDNA D930032P07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-93163991-1	chr10	93163891	93164091	+	542.0	f1_c57bl6.idr	intron (NM_146239, intron 1 of 16)	intron (NM_146239, intron 1 of 16)	1206.0	NR_035452	100316689.0		NR_035452	ENSMUSG00000089214	Mir1931	mir-1931|mmu-mir-1931	microRNA 1931	ncRNA	1.81279123345472	0.8419343643464	1.62558862120517	1.76582815568379	1.58977932598105	0.845394848929478	0.829839463381481	1.02288363005523	-1.63675660032811	0.243441134095457	0.740751247850617
Merged-chr8-117415003-2	chr8	117414903	117415103	+	558.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028941, intron 4 of 20)	intron (NM_028941, intron 4 of 20)	-38020.0	NR_106045	102466801.0		NR_106045	ENSMUSG00000099062	Mir7077	Gm27774|mmu-mir-7077	microRNA 7077	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24351077-2	chr17	24350977	24351177	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013855)	promoter-TSS (NM_013855)	-946.0	NM_013855	27410.0	Mm.239470	NM_013855	ENSMUSG00000024130	Abca3	1810036E22Rik|ABC-C|Abc3	ATP-binding cassette, sub-family A (ABC1), member 3	protein-coding	3.17732755175226	3.72295126656637	3.98019800705768	3.50402880225726	3.03072698881038	2.58688872370012	3.55300552924518	3.65939045322849	-0.535447065838501	0.349879894080875	0.850386723313101
Merged-chr11-83224927-3	chr11	83224826	83225026	+	846.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015519, intron 3 of 3)	RMER17C|LTR|ERVK	1350.0	NR_015519	100043636.0	Mm.295569	NR_015519	ENSMUSG00000087107	AI662270	AW496474	expressed sequence AI662270	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-62726791-3	chr18	62726691	62726891	+	827.027771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168423, intron 1 of 4)	MTEb|LTR|ERVL-MaLR	14596.0	NM_001168423	100038417.0	Mm.387557	NM_001168423	ENSMUSG00000073551	Spink13	Gm10534|Spink5l3	serine peptidase inhibitor, Kazal type 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-49208049-2	chr13	49207949	49208149	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_026738, exon 2 of 6)	exon (NM_026738, exon 2 of 6)	7977.0	NM_026738	68480.0	Mm.3336	NM_026738	ENSMUSG00000037960	Card19	1110007C09Rik|AI851695|Bincard	caspase recruitment domain family, member 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-75283020-3	chr9	75282906	75283106	+	950.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081322, intron 25 of 40)	intron (NM_001081322, intron 25 of 40)	-23282.0	NM_010313	14697.0	Mm.17604	NM_010313	ENSMUSG00000032192	Gnb5	GBS|Gbeta5|flr	guanine nucleotide binding protein (G protein), beta 5	protein-coding	0.931913574588445	0.793017468557575	0.776387333033942	1.55233787534271	1.24088335035194	1.56165383825931	1.01137389541563	2.13940230932283	1.82476905722985	0.177498137162922	0.647432909307077
Merged-chr16-30740993-2	chr16	30740893	30741093	+	731.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	141270.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75532585-3	chr11	75532496	75532696	+	829.888855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_173388, exon 2 of 14)	5' UTR (NM_173388, exon 2 of 14)	484.0	NM_001199283	215113.0	Mm.11186	NM_173388	ENSMUSG00000038178	Slc43a2	7630402D21Rik|BC042513|Lat4	solute carrier family 43, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-90312510-4	chr16	90312401	90312601	+	995.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	-27998.0	NM_178923	224432.0	Mm.439811	NM_178923	ENSMUSG00000022983	Scaf4	AA517739|Sfrs15|Sra4|Srsf15	SR-related CTD-associated factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35860737-2	chr17	35860612	35860812	+	558.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134122)	promoter-TSS (NM_134122)	-606.0	NM_134122	106582.0	Mm.390992	NM_134122	ENSMUSG00000059791	Nrm	2610307M02Rik|AI429796	nurim (nuclear envelope membrane protein)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-97065194-2	chr15	97065094	97065294	+	682.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9238.0	NM_027052	69354.0	Mm.250980	NM_027052	ENSMUSG00000022464	Slc38a4	1110012E16Rik|1700012A18Rik|Ata3|mATA3|mNAT3	solute carrier family 38, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-22073023-2	chr9	22072923	22073123	+	547.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001253898, exon 7 of 8)	exon (NM_001253898, exon 7 of 8)	-1647.0	NM_001310759	319601.0	Mm.347707	NM_177318	ENSMUSG00000038895	Zfp653	E430039K05Rik|Znf653	zinc finger protein 653	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-102633151-4	chr9	102633048	102633248	+	673.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181394, intron 2 of 2)	intron (NM_181394, intron 2 of 2)	6852.0	NM_181394	69010.0	Mm.2000	NM_181394	ENSMUSG00000035048	Anapc13	1810004D07Rik|APC13|SWM1	anaphase promoting complex subunit 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-104376223-2	chr8	104376123	104376323	+	627.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_153582, intron 1 of 3)	ID_B1|SINE|B4	19584.0	NM_153582	97487.0	Mm.29658	NM_153582	ENSMUSG00000096188	Cmtm4	Cklfsf4|D19397|Gm9853	CKLF-like MARVEL transmembrane domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-25061090-1	chr16	25060990	25061190	+	549.0	f1_c57bl6.idr	intron (NR_040374, intron 1 of 2)	B1_Mus1|SINE|Alu	1451.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117344562-3	chr11	117344467	117344667	+	975.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113488, intron 1 of 9)	intron (NM_001113488, intron 1 of 9)	12254.0	NM_001113488	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-73311176-2	chr15	73311076	73311276	+	793.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358046, intron 7 of 34)	intron (NM_001358046, intron 7 of 34)	-56294.0	NR_029561	387169.0		NR_029561	ENSMUSG00000065612	Mir151	Mirn151|mir-151|mmu-mir-151	microRNA 151	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-111119385-4	chr9	111119287	111119487	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027742, intron 1 of 13)	intron (NM_027742, intron 1 of 13)	1276.0	NM_001164838	71268.0	Mm.302287	NM_027742	ENSMUSG00000032497	Lrrfip2	5133400F20Rik|AI850587	leucine rich repeat (in FLII) interacting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-132224483-4	chr2	132224381	132224581	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23307.0	NM_027478	70612.0	Mm.30116	NM_027478	ENSMUSG00000027341	Tmem230	5730494N06Rik|AA407821	transmembrane protein 230	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-23369241-4	chr13	23369100	23369300	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172586)	promoter-TSS (NM_172586)	8.0	NM_001286156	218100.0	Mm.286454	NM_172586	ENSMUSG00000046351	Zfp322a	Znf322|Znf322a	zinc finger protein 322A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81268902-2	chr10	81268802	81269002	+	924.625	f1_balb.idr|f1_c57bl6.idr	exon (NM_018758, exon 2 of 11)	exon (NM_018758, exon 2 of 11)	730.0	NM_018758	57267.0	Mm.293931	NM_018758	ENSMUSG00000004931	Apba3	AW208791|Mint-3|X11gamma|lin-10|mint3	amyloid beta (A4) precursor protein-binding, family A, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-35947133-4	chr16	35947026	35947226	+	908.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030253, intron 3 of 10)	intron (NM_030253, intron 3 of 10)	-8099.0	NM_001013371	209200.0	Mm.390852	NM_001013371	ENSMUSG00000049502	Dtx3l	AU042200|BC023741	deltex 3-like, E3 ubiquitin ligase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76654575-2	chr15	76654475	76654675	+	755.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019396, intron 2 of 4)	intron (NM_019396, intron 2 of 4)	2319.0	NM_001357882	54151.0	Mm.247752	NM_019396	ENSMUSG00000053929	Cyhr1	1110031M01Rik|AU042374|Chrp	cysteine and histidine rich 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-62980005-2	chr9	62979905	62980105	+	829.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_019663, intron 1 of 13)	intron (NM_019663, intron 1 of 13)	874.0	NM_019663	56469.0	Mm.431253	NM_019663	ENSMUSG00000032405	Pias1	2900068C24Rik|Ddxbp1|GBP	protein inhibitor of activated STAT 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-22102559-4	chr14	22102449	22102649	+	788.474976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028275, intron 2 of 6)	BLACKJACK|DNA|hAT-Blackjack	82837.0	NM_028275	76633.0	Mm.489898	NM_028275	ENSMUSG00000063458	Lrmda	1700112E06Rik|2700009F18Rik	leucine rich melanocyte differentiation associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-69328809-3	chr8	69328710	69328910	+	818.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	57730.0	NM_172491	211135.0	Mm.294970	NM_172491	ENSMUSG00000079038	D130040H23Rik	-	RIKEN cDNA D130040H23 gene	protein-coding	0.841627194445691	0.301015204931666	0.29068572890735	0.79531373769621	0.453090412856798	1.54342066807892	0.292979380877844	0.284013238417941	0.920798026716281	0.611501271162534	1
Merged-chr19-26606726-4	chr19	26606642	26606842	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011416, intron 1 of 32)	CpG	1582.0	NM_011416	67155.0	Mm.491146	NM_011416	ENSMUSG00000024921	Smarca2	2610209L14Rik|SNF2alpha|Snf2l2|brahma|brm	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-118972889-4	chr2	118972780	118972980	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	46383.0	NM_028117	72136.0	Mm.486238	NM_028117	ENSMUSG00000074916	Chst14	2600016L03Rik|D4ST-1|D4st1	carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 14	protein-coding	4.16883400258233	4.37968359508953	4.00199656689012	4.61798672990217	2.83286995402711	3.2221773003801	4.27327156433383	4.35023925109672	-0.657523181394578	0.192098278881832	0.670648443266021
Merged-chr2-90894431-2	chr2	90894337	90894537	+	888.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_026688)	TTS (NM_026688)	8651.0	NM_026161	67445.0	Mm.258993	NM_026161	ENSMUSG00000040794	C1qtnf4	0710001E10Rik|9430004J15Rik|CTRP4	C1q and tumor necrosis factor related protein 4	protein-coding	1.59341412613839	0.927920013998827	0.501373028020692	0.492370792354363	1.40935748563835	0.515427868859433	0.896188677732766	0.493952395704273	-0.342744606016072	0.841621120115842	0.998431161219273
Merged-chr3-58416508-4	chr3	58416422	58416622	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081229, exon 1 of 4)	exon (NM_001081229, exon 1 of 4)	1802.0	NM_001347233	72033.0	Mm.218409	NM_001081229	ENSMUSG00000027806	Tsc22d2	1810043J12Rik|5530402M19Rik	TSC22 domain family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-151686881-4	chr5	151686770	151686970	+	942.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35662.0	NM_027009	69263.0	Mm.12553	NM_027009	ENSMUSG00000033970	Rfc3	2810416I22Rik|38kDa|AU022547|Recc3	replication factor C (activator 1) 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150091336-2	chr4	150091236	150091436	+	625.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177366, intron 1 of 3)	intron (NM_177366, intron 1 of 3)	3833.0	NM_177366	269604.0	Mm.219307	NM_177366	ENSMUSG00000047875	Gpr157	F730108M23Rik	G protein-coupled receptor 157	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-118118127-4	chr7	118118019	118118219	+	955.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_019419)	TTS (NM_019419)	-1972.0	NM_170669	267019.0	Mm.288212	NM_170669	ENSMUSG00000008683	Rps15a	A630031B11Rik	ribosomal protein S15A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-107294593-2	chr11	107294493	107294693	+	631.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 5 of 9)	intron (NR_153311, intron 5 of 9)	-105212.0	NM_001161329	68979.0	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-94813990-4	chr13	94813919	94814119	+	968.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009321, intron 1 of 3)	intron (NM_009321, intron 1 of 3)	25076.0	NM_009321	21371.0	Mm.379025	NM_009321	ENSMUSG00000042043	Tbca	Tbca13	tubulin cofactor A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-18052845-4	chr16	18052730	18052930	+	818.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010047)	promoter-TSS (NM_010047)	-30.0	NM_010047	13353.0	Mm.27155	NM_010047	ENSMUSG00000003531	Dgcr6	-	DiGeorge syndrome critical region gene 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-126771751-4	chr3	126771641	126771841	+	996.6083369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025438, intron 6 of 18)	intron (NM_001025438, intron 6 of 18)	171645.0	NM_001034168	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	0.90212172009324	2.0406442538522	1.50335089898314	1.31059761107246	1.39461633881415	1.7152946564475	0.944586776037588	1.91226773333838	0.107237721787433	0.932244799252817	0.998431161219273
Merged-chr14-32931256-3	chr14	32931091	32931291	+	808.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178791, intron 7 of 7)	intron (NM_178791, intron 7 of 7)	-60191.0	NM_001146021	67580.0	Mm.46115	NM_026253	ENSMUSG00000041673	Lrrc18	4930442L21Rik|MTLR1	leucine rich repeat containing 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-63934669-2	chr7	63934569	63934769	+	556.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021366, intron 1 of 1)	intron (NM_021366, intron 1 of 1)	4246.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	-0.452800155135013	-0.438880275741052	-0.44342584672547	0.00299080339631735	-0.451927260820825	-0.437857580361173	0.370076794281529	-0.446327653190484	1.17177013693457	0.663758107814259	1
Merged-chr7-141070263-4	chr7	141070162	141070362	+	777.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177897, intron 14 of 19)	intron (NM_177897, intron 14 of 19)	-7967.0	NM_001162924	56460.0	Mm.350037	NM_019762	ENSMUSG00000054065	Pkp3	2310056L12Rik	plakophilin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-70400995-1	chr17	70400895	70401095	+	694.0	f1_balb.idr	intron (NM_001347411, intron 3 of 14)	intron (NM_001347411, intron 3 of 14)	-23797.0	NM_177639	224997.0	Mm.311840	NM_027712	ENSMUSG00000003279	Dlgap1	4933422O14Rik|9630002F18|AI845682|AI848168|BB075781|D17Bwg0511e|GKAP/SAPAP|GKPA/SAPAP|Gkap|Sapap1|mKIAA4162	DLG associated protein 1	protein-coding	-0.114729966761291	-0.495995186701762	-0.500288253408933	-0.503607522593699	-0.508308777609017	-0.495028873849818	0.308031443556289	-0.503027206757302	1.39236649799336	0.611914747192908	1
Merged-chr11-103246523-4	chr11	103246416	103246616	+	951.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016896, intron 1 of 15)	intron (NM_016896, intron 1 of 15)	20885.0	NM_016896	53859.0	Mm.158981	NM_016896	ENSMUSG00000020941	Map3k14	Nik|aly	mitogen-activated protein kinase kinase kinase 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-95848110-3	chr13	95848013	95848213	+	935.511108	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027711, intron 1 of 35)	Lx8|LINE|L1	43809.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	3.69252874754369	4.4027456782039	3.81773020909012	2.76601349298846	2.75225826678244	3.53042682531345	3.00471392158348	1.88144792844915	-1.3645949000822	0.0383778747186455	0.278952589382659
Merged-chr4-136453808-1	chr4	136453708	136453908	+	661.0	f1_c57bl6.idr	Intergenic	Intergenic	-15953.0	NM_024452	269593.0	Mm.485824	NM_024452	ENSMUSG00000001089	Luzp1	2700072H04Rik|AI266952|Luzp|mFLJ00226	leucine zipper protein 1	protein-coding	0.383400112552445	0.879600917855057	0.431304250167523	0.245472240274176	0.628960954082941	0.891008101546007	0.252214159050925	0.24638934593109	0.168216555231649	0.92688198781482	1
Merged-chr13-107934031-2	chr13	107933931	107934131	+	620.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID|SINE|ID	-43967.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3907068-4	chr19	3906969	3907169	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001167784)	promoter-TSS (NM_001167784)	64.0	NM_001136091	27060.0	Mm.271689	NM_016921	ENSMUSG00000001750	Tcirg1	ATP6N1C|ATP6a3|Atp6i|OC-116|OPTB1|Stv1|TIRC7|Vph1|oc	T cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 protein A3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-77765461-2	chr15	77765361	77765561	+	682.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_022410, intron 35 of 40)	intron (NM_022410, intron 35 of 40)	-8451.0	NM_001357895	239552.0	Mm.125650	NM_001081970	ENSMUSG00000056656	Apol8	9830006J20Rik|APOL-II|Apol2	apolipoprotein L 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-20249508-4	chr11	20249415	20249615	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172260)	promoter-TSS (NM_172260)	-91.0	NM_172260	216543.0	Mm.260314	NM_172260	ENSMUSG00000044066	Cep68	6030463E10Rik|AI481761|BC027174|Kiaa0582	centrosomal protein 68	protein-coding	7.37044479416333	7.89615458836177	7.80308114389792	7.51366718430029	7.69213388559179	7.7952241167504	7.5454328205871	7.21489194875308	-0.0829419207966925	0.621988170823863	0.979537295922371
Merged-chr18-77714038-4	chr18	77713923	77714123	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178670)	promoter-TSS (NM_178670)	-13.0	NM_178670	212163.0	Mm.23293	NM_178670	ENSMUSG00000047466	8030462N17Rik	Akd2|Ark2N	RIKEN cDNA 8030462N17 gene	protein-coding	5.7982893220835	5.27287071369287	5.35349157192033	5.89714380980459	5.80178995529881	5.34452122295243	4.94845552551739	5.62503281128982	-0.158155752591152	0.59087327894662	0.969631293991275
Merged-chr1-80659651-4	chr1	80659561	80659761	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175291, intron 1 of 55)	intron (NM_175291, intron 1 of 55)	5691.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-75610696-3	chr7	75610614	75610814	+	938.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029332, exon 7 of 37)	exon (NM_029332, exon 7 of 37)	155180.0	NM_029332	75547.0	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-5061402-7	chr7	5061288	5061488	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133671)	promoter-TSS (NM_133671)	-755.0	NM_133671	22185.0	Mm.360389	NM_133671	ENSMUSG00000030435	U2af2	65kDa	U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2	protein-coding	4.91492448105276	3.13610948214703	4.59214735787275	3.91071288681289	4.57521269283837	4.72126954919772	4.87569995523911	4.1863185142487	0.378305276005266	0.405304016692529	0.890629595655123
Merged-chr11-4661587-4	chr11	4661509	4661709	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029291, intron 8 of 19)	intron (NM_029291, intron 8 of 19)	23816.0	NM_029291	75452.0	Mm.439906	NM_029291	ENSMUSG00000020412	Ascc2	1700011I11Rik|2610034L15Rik|AI482016|ASC1p100|AW046480	activating signal cointegrator 1 complex subunit 2	protein-coding	2.8305832940581	2.24647072439609	2.89787947998907	3.0531191720722	2.99109774448318	2.07107130946867	1.78739627889523	2.83172499828432	-0.512508921570948	0.515856803332245	0.947402641287243
Merged-chr10-13501920-2	chr10	13501820	13502020	+	986.9166869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_025799, intron 1 of 6)	ORR1A2|LTR|ERVL-MaLR	892.0	NM_025799	66848.0	Mm.26625	NM_025799	ENSMUSG00000019810	Fuca2	0610025O11Rik|5530401P20Rik	fucosidase, alpha-L- 2, plasma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-53221469-3	chr15	53221359	53221559	+	694.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	124724.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152898958-2	chr1	152898858	152899058	+	580.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001160257, intron 1 of 23)	intron (NM_001160257, intron 1 of 23)	3687.0	NM_001359257	226517.0	Mm.270775	NM_001005507	ENSMUSG00000042772	Smg7	9430023P16Rik|mKIAA0250	Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-107134646-4	chr3	107134560	107134760	+	997.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10B|LTR|ERVL	33093.0	NM_008417	16490.0	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-106619730-2	chr8	106619630	106619830	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009864, intron 2 of 15)	intron (NM_009864, intron 2 of 15)	16380.0	NM_009864	12550.0	Mm.35605	NM_009864	ENSMUSG00000000303	Cdh1	AA960649|ARC-1|E-cad|Ecad|L-CAM|UVO|Um	cadherin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120457193-4	chr11	120457154	120457354	+	953.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_152807)	promoter-TSS (NM_152807)	816.0	NM_001356385	66431.0	Mm.45063	NM_025560	ENSMUSG00000039670	Oxld1	1810049H13Rik	oxidoreductase like domain containing 1	protein-coding	3.28304699837214	3.50526319830412	3.19107379518157	4.2783346764609	2.95932329970738	3.32886074599188	3.80306977467957	3.55271856595895	-0.307375119009084	0.585767685117958	0.967449368090758
Merged-chr19-5786660-4	chr19	5786548	5786748	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9333.0	NR_144621	109146451.0		NR_144621		Mascrna	-	Malat1-associated small cytoplasmic RNA	scRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-104053168-4	chr5	104053062	104053262	+	951.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028794, intron 2 of 7)	intron (NM_028794, intron 2 of 7)	5159.0	NR_049192	100885831.0		NR_049192	ENSMUSG00000093690	Mir5619	Gm23866|mir-5619|mmu-mir-5619	microRNA 5619	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-43377056-3	chr16	43376948	43377148	+	712.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181058, intron 2 of 6)	intron (NM_181058, intron 2 of 6)	43148.0	NR_046026	626693.0	Mm.447083	NR_046026	ENSMUSG00000085499	Gm15713	-	predicted gene 15713	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-76182986-2	chr14	76182886	76183086	+	613.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-68476.0	NR_152108	72893.0	Mm.233565	NR_152108		2900040C04Rik	-	RIKEN cDNA 2900040C04 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-4919494-3	chr2	4919444	4919644	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010726, intron 1 of 8)	intron (NM_010726, intron 1 of 8)	548.0	NM_010726	16922.0	Mm.391704	NM_010726	ENSMUSG00000026664	Phyh	AI256161|AI265699|Lnap1|PAHX	phytanoyl-CoA hydroxylase	protein-coding	2.99351942112425	3.5073368234475	3.02862176358074	3.17425065888946	4.43517850304832	4.90220976869224	4.17374689351529	4.35336503053573	1.84104104422208	0.000108349561676374	0.00327725556552892
Merged-chr13-79917387-2	chr13	79917287	79917487	+	745.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5b|LINE|L1	-965997.0	NR_153410	105171.0	Mm.423137	NM_001042591	ENSMUSG00000074794	Arrdc3	AI450344|mKIAA1376	arrestin domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-52314997-2	chr12	52314897	52315097	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	165612.0	NR_136881	102638611.0	Mm.363799	NR_136881	ENSMUSG00000111982	Gm35135	-	predicted gene, 35135	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-52198955-2	chr14	52198855	52199055	+	705.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_201637, exon 37 of 37)	exon (NM_201637, exon 37 of 37)	-1716.0	NM_033618	114741.0	Mm.21662	NM_033618	ENSMUSG00000035726	Supt16	Cdc68|Fact140|Spt16|Supt16h	suppressor of Ty 16	protein-coding	0.209658951935087	0.229091311478857	0.222728889958824	0.751311771161698	0.483925781900126	0.852514400627167	0.687627692412591	0.21867580617636	1.33556957448846	0.496013215253132	1
Merged-chr16-15563159-2	chr16	15563059	15563259	+	799.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159351, intron 2 of 2)	Lx4B|LINE|L1	31359.0	NM_001159351	70620.0	Mm.235407	NM_023585	ENSMUSG00000022674	Ube2v2	1110021H13Rik|4632410D19Rik|5730524P06Rik|6820402M05|AI848315|C81524|MMS2	ubiquitin-conjugating enzyme E2 variant 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41803591-2	chr19	41803476	41803676	+	892.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1492.0	NM_027667	71085.0	Mm.21646	NM_027667	ENSMUSG00000025154	Arhgap19	4933411B03Rik|AI120128|AW546831|mFLJ00368	Rho GTPase activating protein 19	protein-coding	0.295317090135961	0.6560297312093	0.747379611322006	0.818411228478212	0.761978823068591	0.315640691167712	0.309398723649261	0.464399616859699	-1.07430584910885	0.554266746187995	1
Merged-chr14-66184334-2	chr14	66184234	66184434	+	794.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 5 of 30)	L1MC1|LINE|L1	29490.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72107149-4	chr6	72107050	72107250	+	905.366699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011375, intron 1 of 6)	intron (NM_011375, intron 1 of 6)	9542.0	NM_011375	20454.0	Mm.38248	NM_011375	ENSMUSG00000056091	St3gal5	3S-T|Siat9|[a]2	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-21317487-1	chr11	21317387	21317587	+	545.0	f1_c57bl6.idr	intron (NM_001290628, intron 22 of 22)	intron (NM_001290628, intron 22 of 22)	27188.0	NR_035454	100316753.0		NR_035454	ENSMUSG00000089555	Mir1933	mir-1933|mmu-mir-1933	microRNA 1933	ncRNA	-0.416127592866183	-0.322588794371484	-0.655708683097458	-0.657934013555658	-0.307536854651771	-0.652150740807515	-0.655070421029472	-0.657546081922596	-0.6362825334284	0.81742374630526	1
Merged-chr1-166380647-2	chr1	166380547	166380747	+	631.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_030245, intron 1 of 7)	intron (NM_030245, intron 1 of 7)	1480.0	NM_030245	27878.0	Mm.100665	NM_030245	ENSMUSG00000026563	Tada1	2900026B15Rik|D1Ertd251e|Staf42|Tada1l	transcriptional adaptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-162625505-4	chr1	162625357	162625557	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13693.0	NM_010865	17926.0	Mm.10694	NM_010865	ENSMUSG00000026697	Myoc	AI957332|GLC1A|TIGR	myocilin	protein-coding	6.07050448306604	6.76977737628921	6.51115694979915	7.04382964556626	6.7902695929488	6.88907026341761	6.80877690840558	6.30294395930193	0.0796618943015261	0.727348811272482	0.998431161219273
Merged-chr2-73206169-3	chr2	73206071	73206271	+	816.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030091, intron 2 of 7)	intron (NM_030091, intron 2 of 7)	8276.0	NM_030091	67059.0	Mm.22661	NM_025942	ENSMUSG00000027108	Ola1	2510025G09Rik|2810405J23Rik|2810409H07Rik|Gtpbp9|PTD004	Obg-like ATPase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-131353738-4	chr6	131353642	131353842	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34708.0	NM_139117	56449.0	Mm.458000	NM_011733	ENSMUSG00000030189	Ybx3	Csda|Dpba|MSY3|MSY4|Yb2|dbpA|oxyR	Y box protein 3	protein-coding	2.47469680809386	1.63432891425	1.94479516829158	2.15066155869022	1.94898935931142	2.30116313330379	2.2270328000425	2.36809457493924	0.301696090858916	0.734924035845862	0.998431161219273
Merged-chr1-172497781-1	chr1	172497681	172497881	+	1000.0	f1_balb.idr	intron (NM_033608, intron 19 of 20)	intron (NM_033608, intron 19 of 20)	-2465.0	NM_178598	21346.0	Mm.271711	NM_178598	ENSMUSG00000026547	Tagln2	2700094C18Rik|SM22beta|Sm22B|Sm22a	transgelin 2	protein-coding	2.09703012840938	1.20970236796959	1.62348507444057	2.00422545692582	2.11512191875291	1.21548479263838	2.56355414164485	2.31863608906063	0.942809510262743	0.379308207044788	0.871744368943447
Merged-chr18-61134832-6	chr18	61134828	61135028	+	817.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134134, intron 19 of 20)	intron (NM_134134, intron 19 of 20)	17460.0	NR_105949	102466212.0		NR_105949	ENSMUSG00000098389	Mir6983	Gm27496|mmu-mir-6983	microRNA 6983	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-77606135-4	chr10	77606033	77606233	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_125904)	promoter-TSS (NR_125904)	36.0	NM_019929	20610.0	Mm.24433	NM_019929	ENSMUSG00000020265	Sumo3	2810014B19Rik|D10Ertd345e|SMT3A|SUMO-3|Smt3h1	small ubiquitin-like modifier 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-21158968-2	chr10	21158868	21159068	+	660.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001198914, intron 1 of 15)	intron (NM_001198914, intron 1 of 15)	2016.0	NM_001198914	17863.0	Mm.52109	NM_010848	ENSMUSG00000019982	Myb	AI550390|M16449|c-myb	myeloblastosis oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71654736-4	chr8	71654620	71654820	+	780.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029873, intron 15 of 41)	intron (NM_001029873, intron 15 of 41)	17037.0	NM_001029873	382018.0	Mm.334606	NM_001029873	ENSMUSG00000034799	Unc13a	2410078G03Rik|Munc13-1	unc-13 homolog A (C. elegans)	protein-coding	1.28665877368999	1.9902939296199	0.79733368583415	0.781003849426652	0.757078212325201	2.28074200184118	1.57694977950422	1.21356671362995	0.795480259140639	0.564149926160486	0.960367595640396
Merged-chr10-46107495-4	chr10	46107414	46107614	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-137234.0	NR_028274	100302593.0		NR_028274	ENSMUSG00000095118	Snord14d	Gm23710	small nucleolar RNA, C/D box 14D	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80640001-4	chr7	80639898	80640098	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040343, intron 4 of 4)	intron (NR_040343, intron 4 of 4)	3981.0	NR_040343	100504375.0	Mm.322881	NR_040343	ENSMUSG00000084821	Gm15880	-	predicted gene 15880	ncRNA	1.86538868758604	1.88359067367464	3.74062275567104	1.75074771579542	3.53922039308798	3.70392235233278	3.58328742063994	3.17741819884322	1.43704368247557	0.0621251721509902	0.369975752217528
Merged-chr16-11012085-4	chr16	11011915	11012115	+	907.2666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040518, intron 2 of 2)	intron (NR_040518, intron 2 of 2)	3117.0	NR_040518	100043147.0	Mm.489001	NR_040518	ENSMUSG00000097056	Gm4262	-	predicted gene 4262	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-4082838-4	chr12	4082667	4082867	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_153082, exon 1 of 7)	5' UTR (NM_153082, exon 1 of 7)	193.0	NM_153082	217378.0	Mm.271656	NM_153082	ENSMUSG00000020657	Dnajc27	AI639580|C330021A05Rik|Rabj|Rbj	DnaJ heat shock protein family (Hsp40) member C27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-38560114-4	chr16	38560019	38560219	+	820.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205286, intron 1 of 8)	ID_B1|SINE|B4	1421.0	NM_001205286	67846.0	Mm.310476	NM_026407	ENSMUSG00000002845	Tmem39a	2610033C09Rik	transmembrane protein 39a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-36431619-4	chr17	36431520	36431720	+	828.891663	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30709.0	NM_177634	224753.0	Mm.246581	NM_177634	ENSMUSG00000048231	H2-M10.4	15H	histocompatibility 2, M region locus 10.4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-81782416-2	chr13	81782316	81782516	+	947.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007684)	promoter-TSS (NM_007684)	-831.0	NM_007684	12626.0	Mm.12481	NM_007684	ENSMUSG00000021537	Cetn3	MmCEN3	centrin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-62667807-4	chr4	62667689	62667889	+	796.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134257, intron 10 of 15)	L2|LINE|L2	-6185.0	NM_001310706	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-117227126-1	chr5	117227026	117227226	+	555.0	f1_balb.idr	intron (NM_001081308, intron 11 of 19)	intron (NM_001081308, intron 11 of 19)	60438.0	NM_018858	23980.0	Mm.195898	NM_018858	ENSMUSG00000032959	Pebp1	HCNP|Pbp|Pbp1|Pbpr|Rkip	phosphatidylethanolamine binding protein 1	protein-coding	-0.556653626122184	-0.544942573649292	-0.54878015906798	-0.551740426075293	-0.555922843738099	-0.544077422847303	-0.0778234456025752	0.0931972748977727	3.48149130356386	0.204100917281614	1
Merged-chr5-43948275-2	chr5	43948175	43948375	+	667.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33524.0	NM_008009	14181.0	Mm.46053	NM_008009	ENSMUSG00000048373	Fgfbp1	FGF-BP|FGF-BP1|FGFBP-1	fibroblast growth factor binding protein 1	protein-coding	1.67092352511744	2.48684489730254	0.932045525154044	0.913518333034024	1.43548716366896	1.92371760862112	0.937238726670169	1.99946678062453	-0.138693118125859	0.914949684258431	0.998431161219273
Merged-chr16-25597613-1	chr16	25597513	25597713	+	588.0	f0_c57.idr	Intergenic	L1_Mur3|LINE|L1	-86152.0	NM_001127259	22061.0	Mm.20894	NM_011641	ENSMUSG00000022510	Trp63	AI462811|Ket|P51/P63|P63|P73l|Tp63|Trp53rp1	transformation related protein 63	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33950331-4	chr16	33950223	33950423	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010580)	TTS (NM_010580)	16715.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-108213060-4	chr6	108212959	108213159	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010585)	promoter-TSS (NM_010585)	-37.0	NM_010585	16438.0	Mm.227912	NM_010585	ENSMUSG00000030102	Itpr1	D6Pas2|Gm10429|IP3R 1|IP3R1|InsP3R|Ip3r|Itpr-1|P400|Pcp-1|Pcp1|insP3R1|opt|wblo	inositol 1,4,5-trisphosphate receptor 1	protein-coding	5.6242870255567	5.95247989373242	4.81244250136535	5.24153916787527	5.3394872239486	5.81942315213294	5.10047152343555	5.38185651328343	-0.0444782822304023	0.887574736154531	0.998431161219273
Merged-chr1-176834155-4	chr1	176834042	176834242	+	793.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_037996)	TTS (NR_037996)	1991.0	NR_037996	15365.0	Mm.441435	NR_037996		Hmga2-ps1	EG666235|Gm7996|Hmgic-ps1|[y]i-c	high mobility group AT-hook 2, pseudogene 1	pseudo	1.42470473649064	1.72950782229808	1.2174334319258	1.62115523435343	1.91062991825088	1.44537423265647	1.79874723544741	0.996864596450361	0.281231508831303	0.810963439664881	0.998431161219273
Merged-chr2-3511310-2	chr2	3511210	3511410	+	715.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_149715, intron 1 of 4)	intron (NR_149715, intron 1 of 4)	1504.0	NR_103465	50497.0	Mm.89341	NM_015765	ENSMUSG00000051396	Hspa14	70kDa|HSP70L1|Hsp70-4|NST-1|hsr.1	heat shock protein 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-18288523-2	chr18	18288423	18288623	+	660.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MERV1_I-int|LTR|ERV1	-707533.0	NR_045374	75162.0	Mm.60874	NR_045374		4930545E07Rik	-	RIKEN cDNA 4930545E07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-27662925-4	chr15	27662814	27663014	+	752.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001242424, intron 4 of 8)	intron (NM_001242424, intron 4 of 8)	18628.0	NM_001242424	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-118536056-2	chr7	118535956	118536156	+	783.833313	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172476, exon 16 of 16)	3' UTR (NM_172476, exon 16 of 16)	-2700.0	NM_009940	12850.0	Mm.20634	NM_009940	ENSMUSG00000030652	Coq7	clk-1	demethyl-Q 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44170174-4	chr9	44170085	44170285	+	769.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007619, intron 3 of 15)	intron (NM_007619, intron 3 of 15)	35527.0	NM_001359530	84004.0	Mm.275003	NM_023061	ENSMUSG00000032135	Mcam	1-gicerin|AV025631|CD146|CD149|Muc18|s-endo|s-gicerin	melanoma cell adhesion molecule	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-38278301-4	chr15	38278231	38278431	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21569.0	NM_001357677	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-128748941-2	chr7	128748841	128749041	+	914.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001029982, intron 1 of 18)	intron (NM_001029982, intron 1 of 18)	4071.0	NM_001029982	207352.0	Mm.297105	NM_001029982	ENSMUSG00000055319	Sec23ip	D7Ertd373e|p125	Sec23 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-132599769-2	chr7	132599669	132599869	+	788.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009123)	promoter-TSS (NM_009123)	-132.0	NM_009123	20231.0	Mm.334281	NM_009123	ENSMUSG00000048528	Nkx1-2	Nkx-1.1|Nkx-1.2|Sax1	NK1 homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-44459222-4	chr17	44459125	44459325	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MamRep564|Unknown|Unknown	270653.0	NM_172621	224796.0	Mm.37666	NM_172621	ENSMUSG00000023959	Clic5	5730531E12Rik|B330005L24|Gm322|jbg|nmf318	chloride intracellular channel 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-129470541-2	chr6	129470441	129470641	+	976.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_020008, intron 2 of 5)	intron (NM_020008, intron 2 of 5)	2238.0	NM_001309637	56644.0	Mm.239516	NM_020008	ENSMUSG00000079293	Clec7a	BGR|Clecsf12|beta-GR	C-type lectin domain family 7, member a	protein-coding	1.96312079092135	2.86466007241752	3.08837491034684	3.24949174242293	2.67838188975541	3.00714901881561	3.28741230726507	3.58931014191745	0.539099012506027	0.430680261600446	0.904323027420747
Merged-chr15-11997206-2	chr15	11997106	11997306	+	872.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1199.0	NM_011294	20024.0	Mm.41746	NM_011294	ENSMUSG00000022205	Sub1	AI842364|P15|P9|Pc4|Rpo2tc1	SUB1 homolog (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150548289-3	chr4	150548177	150548377	+	768.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 11 of 22)	intron (NM_001085492, intron 11 of 22)	103897.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0.557772163781451	0.58108729519844	0.57341747950616	0.567520457563167	0.559218932986213	1.21471518447107	1.26537366935276	1.58878936947686	4.85095864553927	0.00649231614921344	0.0808037439401067
Merged-chr19-47755833-1	chr19	47755733	47755933	+	592.0	f0_balb.idr	promoter-TSS (NR_106165)	promoter-TSS (NR_106165)	-676.0	NR_106165	102465883.0		NR_106165	ENSMUSG00000099069	Mir8090	Gm27862|mmu-mir-8090	microRNA 8090	ncRNA	-2.18375600819439	-2.15556918946382	-2.16409311609999	-2.17109492323169	-2.18177734563694	-2.01960173909294	-2.16216348594872	-2.16984160310277	0.759018020146679	0.829933115115583	1
Merged-chr9-110352501-4	chr9	110352393	110352593	+	816.341675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001144, intron 1 of 22)	intron (NM_001001144, intron 1 of 22)	19137.0	NM_001001144	235623.0	Mm.288741	NM_001001144	ENSMUSG00000032485	Scap	9530044G19|mKIAA0199	SREBF chaperone	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-120501896-2	chr4	120501786	120501986	+	637.666626	f0_balb.idr|f1_balb.idr	intron (NM_001355424, intron 7 of 14)	intron (NM_001355424, intron 7 of 14)	-30345.0	NM_177570	194219.0	Mm.29788	NM_177570	ENSMUSG00000047518	Slfnl1	4933406A14Rik	schlafen like 1	protein-coding	2.05951354669993	1.73426775502349	1.89619422069304	3.02654390978401	2.20454026004591	2.92232125056255	2.39303750580757	3.04186855451193	0.790545462738088	0.349572490988372	0.850169745988882
Merged-chr2-135659198-2	chr2	135659098	135659298	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013829)	promoter-TSS (NM_013829)	-349.0	NM_001355155	18798.0	Mm.38009	NM_013829	ENSMUSG00000039943	Plcb4	A930039J07Rik|AI854601|C230058B11Rik	phospholipase C, beta 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-85432023-4	chr6	85431970	85432170	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144918)	promoter-TSS (NM_144918)	94.0	NM_144918	232187.0	Mm.219946	NM_144918	ENSMUSG00000033706	Smyd5	AW536703|NN8-4AG|Rai15|Rrg1	SET and MYND domain containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-103720809-4	chr14	103720695	103720895	+	933.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21363.0	NR_045148	70898.0	Mm.27548	NR_045148	ENSMUSG00000089707	Slain1os	4921525B02Rik	SLAIN motif family, member 1, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36090223-4	chr1	36090124	36090324	+	951.133301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015818, intron 1 of 1)	intron (NM_015818, intron 1 of 1)	21824.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-102150896-4	chr15	102150807	102151007	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146064, intron 1 of 14)	intron (NM_146064, intron 1 of 14)	332.0	NM_146064	223920.0	Mm.358862	NM_146064	ENSMUSG00000023045	Soat2	ACAT2|D15Wsu97e	sterol O-acyltransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-111868100-4	chr13	111867977	111868177	+	941.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_130345, exon 1 of 3)	non-coding (NR_130345, exon 1 of 3)	141.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	-0.0855596703139698	0.316647919478239	-0.072646050278363	-0.0774800297526088	-0.084353305779623	0.324589630929582	0.846152055764532	-0.0766337956058148	2.2417414999063	0.325592673874067	1
Merged-chr18-79109011-2	chr18	79108911	79109111	+	601.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_053099, intron 1 of 5)	CpG	380.0	NM_053099	240427.0	Mm.312871	NM_053099	ENSMUSG00000024548	Setbp1	C130092E12|Seb|mKIAA0437	SET binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-40064692-3	chr1	40064598	40064798	+	692.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20016.0	NM_010555	16178.0	Mm.1349	NM_010555	ENSMUSG00000026073	Il1r2	CD121b|Il1r-2	interleukin 1 receptor, type II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-67305120-3	chr7	67305034	67305234	+	680.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357324, intron 3 of 11)	intron (NM_001357324, intron 3 of 11)	67724.0	NM_001291192	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-94392931-4	chr11	94392839	94393039	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029600)	promoter-TSS (NM_029600)	37.0	NM_029600	76408.0	Mm.23942	NM_029600	ENSMUSG00000020865	Abcc3	1700019L09Rik|ABC31|MLP2|MOAT-D|MRP3	ATP-binding cassette, sub-family C (CFTR/MRP), member 3	protein-coding	5.82886989378824	5.1618032413239	4.54061765957708	4.71038096689195	5.7837140049025	5.48102893118235	5.07956374475507	5.38798029604047	0.338495268141724	0.326803270023099	0.829199211128231
Merged-chr1-191200339-2	chr1	191200239	191200439	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F1|SINE|Alu	-17006.0	NM_007498	11910.0	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-34139834-3	chr10	34139772	34139972	+	842.116699	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11900.0	NM_175449	215900.0	Mm.34479	NM_175449	ENSMUSG00000046031	Fam26f	A630077B13Rik|Calhm6	family with sequence similarity 26, member F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-75559719-3	chr1	75559616	75559816	+	767.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009208)	TTS (NM_009208)	13254.0	NM_001357150	20536.0	Mm.5053	NM_009208	ENSMUSG00000006576	Slc4a3	A930038D23Rik|Ae3	solute carrier family 4 (anion exchanger), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117783851-4	chr11	117783716	117783916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001195088, exon 4 of 16)	exon (NM_001195088, exon 4 of 16)	1158.0	NM_001195088	217356.0	Mm.116675	NM_181856	ENSMUSG00000050106	Tmc8	EVIN2|Ever2|mFLJ00400	transmembrane channel-like gene family 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171442125-4	chr1	171442027	171442227	+	973.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172647, intron 1 of 9)	intron (NM_172647, intron 1 of 9)	4566.0	NM_172647	16456.0	Mm.294882	NM_172647	ENSMUSG00000038235	F11r	9130004G24|AA638916|ESTM33|JAM|JAM-1|JAM-A|Jcam|Jcam1|Ly106	F11 receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46740200-4	chr8	46740090	46740290	+	997.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045750)	promoter-TSS (NR_045750)	445.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-71113413-3	chr14	71113314	71113514	+	975.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5b|LINE|L1	-137859.0	NR_046075	100043132.0	Mm.399336	NR_046075	ENSMUSG00000115139	Gm4251	-	predicted gene 4251	ncRNA	2.27575032707807	2.43758356648189	1.39753019808001	1.34856744829789	4.13842952930616	3.69600713074282	3.01520924284249	3.3310498257162	3.05837427644078	0.00010803565379326	0.00327326205608974
Merged-chr4-148557856-1	chr4	148557756	148557956	+	646.0	f1_balb.idr	promoter-TSS (NM_016699)	promoter-TSS (NM_016699)	-563.0	NM_016699	50912.0	Mm.266635	NM_016699	ENSMUSG00000017264	Exosc10	PM-Scl|PM/Scl-100|Pmscl2|RRP6|p2|p3|p4	exosome component 10	protein-coding	-0.0578510508998386	0.466856159286438	-0.0461238109162409	-0.0505241543905941	-0.0567593220389358	0.333047851796583	-0.0448676222985834	0.695759594310123	1.26294381403644	0.578350716619601	1
Merged-chr3-137942400-4	chr3	137942318	137942518	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011932, intron 4 of 8)	intron (NM_011932, intron 4 of 8)	23863.0	NM_019920	56692.0	Mm.331392	NM_019920	ENSMUSG00000091512	Lamtor3	AW556229|Map2k1ip1|Mapbp|Mapksp1|Mp1	late endosomal/lysosomal adaptor, MAPK and MTOR activator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-111686265-4	chr13	111686171	111686371	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172593)	promoter-TSS (NM_172593)	93.0	NM_172593	218613.0	Mm.31012	NM_172593	ENSMUSG00000032727	Mier3	5730509D14|AU015422|D130064H19Rik	MIER family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-47224075-4	chr13	47224045	47224245	+	976.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146042, intron 3 of 7)	intron (NM_146042, intron 3 of 7)	30142.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	3.09349391498769	2.81017944640592	3.40700279675542	2.52084864215577	2.81993506629527	2.83048090067072	2.61267003577206	2.65551956123523	-0.511188054440811	0.448371822845678	0.914989884444793
Merged-chr10-122685448-4	chr10	122685348	122685548	+	739.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110218, intron 1 of 9)	intron (NM_001110218, intron 1 of 9)	6133.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	-0.187874043345687	-0.437075285217541	-0.619882411984047	-0.470340375714306	-0.625368715155927	-0.432850500412805	-0.619228000853747	-0.62176637711865	-2.12615828847544	0.402617122640968	1
Merged-chr6-50115955-2	chr6	50115851	50116051	+	590.5	f0_balb.idr|f1_c57bl6.idr	intron (NM_001361248, intron 1 of 13)	intron (NM_001361248, intron 1 of 13)	5091.0	NM_001361248	56524.0	Mm.41288	NM_008016	ENSMUSG00000038388	Mpp6	P55t|Pals2	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	protein-coding	-1.84436392554074	-1.52091821270385	-1.82290882857571	-1.83054882630441	-1.84220491470818	-1.81159244170985	-1.82080331928423	-1.82918127036376	-1.56828060379516	0.655578384384393	1
Merged-chr12-111726146-4	chr12	111725897	111726097	+	996.1785890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163388, intron 3 of 5)	intron (NM_001163388, intron 3 of 5)	12728.0	NM_026511	68020.0	Mm.425762	NM_026511	ENSMUSG00000037787	Apopt1	1700081D05Rik|2810002N01Rik|Apop-1|Apop1	apoptogenic, mitochondrial 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46484294-4	chr19	46484195	46484395	+	958.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025391, intron 11 of 11)	intron (NM_001025391, intron 11 of 11)	-17353.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-8206396-3	chr15	8206284	8206484	+	894.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162906, intron 21 of 52)	L1_Mus2|LINE|L1	37278.0	NM_001162906	73692.0	Mm.164436	NM_001162906	ENSMUSG00000039801	2410089E03Rik	4732468D17Rik|Hug|Jbts17|b2b012Clo	RIKEN cDNA 2410089E03 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-83038249-3	chr15	83038141	83038341	+	583.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4844.0	NM_001271411	74039.0	Mm.32584	NM_028728	ENSMUSG00000058099	Nfam1	4921501M20Rik|Cnaip	Nfat activating molecule with ITAM motif 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-32239125-1	chr4	32239025	32239225	+	1000.0	f0_c57.idr	Intergenic	CpG	-178310.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-111057498-4	chr9	111057412	111057612	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302376)	promoter-TSS (NM_001302376)	6.0	NM_001302376	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	6.30509237341484	5.63151758877899	6.32357587237672	5.83421346040826	6.45176454309319	5.43477102372545	6.40983547071889	5.96032430803046	0.0749638773641148	0.782912449044726	0.998431161219273
Merged-chr2-91476819-4	chr2	91476737	91476937	+	897.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172668, intron 10 of 37)	MIRb|SINE|MIR	19306.0	NM_001145857	228357.0	Mm.275149	NM_172668	ENSMUSG00000027253	Lrp4	6430526J12Rik|D230026E03|Megf7|mdig	low density lipoprotein receptor-related protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-86685420-4	chr17	86685239	86685439	+	740.141663	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68525.0	NM_010137	13819.0	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	3.47022508960593	2.32494376839907	2.66938373620368	2.47461301280516	2.93074271151603	2.78100055733511	2.68998952650785	2.60845323482395	-0.151066552169437	0.833975516939987	0.998431161219273
Merged-chr5-72552157-4	chr5	72552016	72552216	+	908.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153351, intron 4 of 21)	intron (NR_153351, intron 4 of 21)	7529.0	NM_001359837	100978.0	Mm.187453	NM_133921	ENSMUSG00000072889	Nfxl1	1700012H24Rik|AW538212|D430033A06Rik|DNABF|GCF|Gm1058|TCF9	nuclear transcription factor, X-box binding-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44832305-4	chr7	44832209	44832409	+	978.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_053074)	TTS (NM_053074)	-3979.0	NM_010215	14204.0	Mm.2565	NM_010215	ENSMUSG00000074141	Il4i1	Fig1|Fig1-ps|LAAO|LAO	interleukin 4 induced 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120548838-1	chr8	120548738	120548938	+	741.0	f1_balb.idr	intron (NM_001145896, intron 1 of 15)	intron (NM_001145896, intron 1 of 15)	10142.0	NR_106159	102466849.0		NR_106159	ENSMUSG00000098280	Mir7687	Gm27573|mmu-mir-7687	microRNA 7687	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-37347250-4	chr9	37347144	37347344	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081429, intron 2 of 15)	intron (NM_001081429, intron 2 of 15)	1148.0	NM_001081429	245902.0	Mm.390150	NM_001081429	ENSMUSG00000034303	Ccdc15	A630039F14Rik|D030074L19	coiled-coil domain containing 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-146221947-2	chr5	146221826	146222026	+	637.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001256086)	promoter-TSS (NM_001256086)	-469.0	NM_028774	74132.0	Mm.26696	NM_028774	ENSMUSG00000029634	Rnf6	1200013I08Rik|5730419H05Rik|AA537053	ring finger protein (C3H2C3 type) 6	protein-coding	-0.673580178823537	-0.663022695588727	-0.666485721911705	-0.669154796965308	-0.672922319684504	-0.662241540551378	-0.0837517637071772	-0.2354685332156	3.31875044383135	0.242363635014961	1
Merged-chr7-43634945-2	chr7	43634845	43635045	+	547.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028236, intron 1 of 5)	intron (NM_028236, intron 1 of 5)	206.0	NM_028236	72431.0	Mm.158821	NM_028236	ENSMUSG00000030472	Ceacam18	2010110O04Rik	carcinoembryonic antigen-related cell adhesion molecule 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-91169146-2	chr13	91169046	91169246	+	562.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025770, intron 2 of 7)	intron (NM_025770, intron 2 of 7)	54841.0	NM_025770	66795.0	Mm.235385	NM_025770	ENSMUSG00000021619	Atg10	5330424L23Rik|5430428K15Rik|AI852123|APG10|Agp10|Apg10l|Apg10p|Atg10l	autophagy related 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-104029821-3	chr14	104029707	104029907	+	607.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2665.0	NR_045953	73877.0	Mm.399172	NR_045953	ENSMUSG00000115727	4930432J09Rik	-	RIKEN cDNA 4930432J09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-105522358-3	chr5	105522253	105522453	+	609.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_133897, intron 1 of 3)	MIRb|SINE|MIR	2882.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-92270405-2	chr6	92270305	92270505	+	864.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	-25755.0	NM_009426	22044.0	Mm.1363	NM_009426	ENSMUSG00000005892	Trh	Pro-TRH|Trf	thyrotropin releasing hormone	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-153559459-4	chr1	153559380	153559580	+	717.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9766.0	NM_028749	74091.0	Mm.24887	NM_028749	ENSMUSG00000042684	Npl	0610033B02Rik	N-acetylneuraminate pyruvate lyase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-68176964-2	chr17	68176864	68177064	+	836.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-96833.0	NM_177278	320858.0	Mm.137356	NM_177278	ENSMUSG00000041565	L3mbtl4	A730037L19Rik|D930040M24Rik	L3MBTL4 histone methyl-lysine binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116492169-1	chr11	116492069	116492269	+	808.0	f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-1823.0	NM_026364	67763.0	Mm.25125	NM_026364	ENSMUSG00000015869	Prpsap1	5730409F23Rik|PAP39	phosphoribosyl pyrophosphate synthetase-associated protein 1	protein-coding	0.329494787722763	1.30448284682435	0.385474044857079	0.899574065647932	0.157872717860205	0.185959372232139	0.176957912639633	0.169173790361707	-4.4271458423661	0.018398994409776	1
Merged-chr5-147748197-4	chr5	147748082	147748282	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22194.0	NM_010228	14254.0	Mm.389712	NM_010228	ENSMUSG00000029648	Flt1	AI323757|Flt-1|VEGFR-1|VEGFR1|sFlt1	FMS-like tyrosine kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-20735601-3	chr18	20735493	20735693	+	929.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019737, intron 1 of 8)	intron (NM_019737, intron 1 of 8)	10811.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-24735321-3	chr12	24735236	24735436	+	794.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	27082.0	NM_009104	20135.0	Mm.99	NM_009104	ENSMUSG00000020649	Rrm2	AA407299|R2	ribonucleotide reductase M2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-96785067-3	chr11	96784965	96785165	+	857.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-4071.0	NM_007622	12412.0	Mm.29055	NM_007622	ENSMUSG00000018666	Cbx1	Cbx|Cbx-rs2|E430007M08Rik|HP1B|Hp1beta|M31|MOD1	chromobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-80488664-1	chr9	80488564	80488764	+	542.0	f1_balb.idr	Intergenic	RLTR26C_MM|LTR|ERVK	-23226.0	NM_022016	63859.0	Mm.422780	NM_022016	ENSMUSG00000032343	Impg1	A930015H12Rik|IMP150|SPACR	interphotoreceptor matrix proteoglycan 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-72111901-4	chr9	72111789	72111989	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253862)	promoter-TSS (NM_001253862)	-70.0	NM_011544	21406.0	Mm.171615	NM_011544	ENSMUSG00000032228	Tcf12	A130037E08Rik|ALF1|HEB|HEBAlt|HTF-4|HTF4|ME1|REB|bHLHb20	transcription factor 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135623599-2	chr5	135623479	135623679	+	615.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-9075.0	NM_001357037	215160.0	Mm.295438	NM_031398	ENSMUSG00000039917	Rhbdd2	0610011L13Rik|AI480532|Rhbdl7|Usmg1	rhomboid domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5023767-5	chr19	5023703	5023903	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007854)	promoter-TSS (NM_007854)	-203.0	NM_007854	13340.0	Mm.4930	NM_007854	ENSMUSG00000024891	Slc29a2	Der12|Ent2|Hnp36	solute carrier family 29 (nucleoside transporters), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141950554-1	chr7	141950454	141950654	+	542.0	f1_balb.idr	intron (NM_001009929, intron 1 of 19)	CpG	803.0	NM_001009929	75770.0	Mm.274868	NM_029426	ENSMUSG00000053046	Brsk2	4833424K13Rik|SAD-A|SADA	BR serine/threonine kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-4510031-4	chr7	4509922	4510122	+	995.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011618, exon 8 of 14)	exon (NM_011618, exon 8 of 14)	5953.0	NM_001277903	21955.0	Mm.358643	NM_011618	ENSMUSG00000064179	Tnnt1	AW146156|Tnt|sTnT|ssTnT	troponin T1, skeletal, slow	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117434222-2	chr10	117434113	117434313	+	769.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13222.0	NR_152734	102634600.0	Mm.399106	NR_152734	ENSMUSG00000112344	Gm32141	-	predicted gene, 32141	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-18236387-2	chr14	18236287	18236487	+	596.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011584, intron 1 of 7)	B1_Mus1|SINE|Alu	2719.0	NM_011584	353187.0	Mm.26587	NM_011584	ENSMUSG00000021775	Nr1d2	RVR|Rev-erb	nuclear receptor subfamily 1, group D, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-41973477-3	chr15	41973373	41973573	+	816.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-103753.0	NM_175456	223513.0	Mm.148913	NM_175456	ENSMUSG00000042895	Abra	C130068O12Rik|STARS	actin-binding Rho activating protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-98969809-2	chr15	98969709	98969909	+	688.6999509999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-16156.0	NR_045991	75951.0	Mm.441657	NR_045991	ENSMUSG00000097587	4930578M01Rik	3010001K12Rik	RIKEN cDNA 4930578M01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-67286231-3	chr18	67286132	67286332	+	728.277771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2991.0	NM_053261	114663.0	Mm.34079	NM_053261	ENSMUSG00000024525	Impa2	2210415D20Rik|AI326924|AW259601	inositol (myo)-1(or 4)-monophosphatase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-32470626-4	chr9	32470520	32470720	+	802.549988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008026, intron 2 of 8)	intron (NM_008026, intron 2 of 8)	70832.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117385577-2	chr8	117385477	117385677	+	878.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028941, intron 3 of 20)	intron (NM_028941, intron 3 of 20)	36407.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-74749392-2	chr15	74749292	74749492	+	846.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011838, exon 4 of 4)	3' UTR (NM_011838, exon 4 of 4)	-2705.0	NM_001081961	69462.0	Mm.64338	NM_001081961	ENSMUSG00000075605	Slurp2	2300005B03Rik|SLURP-2	secreted Ly6/Plaur domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-5360582-2	chr5	5360482	5360682	+	575.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011074, intron 2 of 14)	intron (NM_011074, intron 2 of 14)	19669.0	NM_011074	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-37194312-5	chr10	37194259	37194459	+	954.507141	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55433.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-109352870-2	chr3	109352770	109352970	+	774.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_020505, intron 1 of 26)	intron (NM_020505, intron 1 of 26)	12187.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-122806103-4	chr10	122806004	122806204	+	715.174988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110218, intron 3 of 9)	intron (NM_001110218, intron 3 of 9)	126789.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-98633042-2	chr15	98632951	98633151	+	885.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356543, intron 1 of 12)	intron (NM_001356543, intron 1 of 12)	723.0	NM_001356543	12297.0	Mm.3544	NM_007581	ENSMUSG00000003352	Cacnb3	Beta3|CAB3|Ca(v)beta3|Cchb3	calcium channel, voltage-dependent, beta 3 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5038333-4	chr19	5038220	5038420	+	885.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175383)	promoter-TSS (NM_175383)	-506.0	NM_175383	108902.0	Mm.29628	NM_175383	ENSMUSG00000047379	B4gat1	1500032M01Rik|B3gnt1|B3gnt6|BETA3GNT1|iGAT|iGNT	beta-1,4-glucuronyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118460497-2	chr11	118460397	118460597	+	599.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-5502.0	NR_045902	100126224.0	Mm.441989	NR_045902	ENSMUSG00000086514	Gm11747	-	predicted gene 11747	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5690958-2	chr17	5690858	5691058	+	701.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 3 of 8)	intron (NM_146073, intron 3 of 8)	-107699.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53037694-2	chr4	53037594	53037794	+	620.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 46 of 49)	intron (NM_013454, intron 46 of 49)	25814.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-10964924-3	chr8	10964821	10965021	+	775.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36464.0	NR_135302	665306.0	Mm.358758	NR_030715	ENSMUSG00000038917	3930402G23Rik	-	RIKEN cDNA 3930402G23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-33047625-2	chr2	33047525	33047725	+	585.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355201, intron 6 of 29)	intron (NM_001355201, intron 6 of 29)	38832.0	NM_001355202	99326.0	Mm.41290	NM_178888	ENSMUSG00000038860	Garnl3	AW120551	GTPase activating RANGAP domain-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-77875203-2	chr18	77875103	77875303	+	756.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013831, intron 11 of 14)	B2_Mm1a|SINE|B2	-63264.0	NM_001195633	100502841.0	Mm.297782	NM_001195633	ENSMUSG00000039840	Epg5	4732475F16|5430411K18Rik|AI661957|AW456499|mKIAA1632	ectopic P-granules autophagy protein 5 homolog (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33917642-4	chr16	33917537	33917737	+	989.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 9 of 14)	intron (NM_001145884, intron 9 of 14)	49401.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5713720-4	chr19	5713624	5713824	+	972.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114595, intron 11 of 17)	intron (NM_001114595, intron 11 of 17)	9253.0	NM_010609	16530.0	Mm.440033	NM_010609	ENSMUSG00000024936	Kcnk7	2310014G03Rik|Kcnk6|Kcnk8|Knot|Mlk3	potassium channel, subfamily K, member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-78549004-3	chr14	78548908	78549108	+	966.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12148.0	NM_001164503	219181.0	Mm.89413	NM_001164503	ENSMUSG00000022016	Akap11	6330501D17Rik|AKAP220|Gm80|PRKA11|mKIAA0629	A kinase (PRKA) anchor protein 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-42990133-3	chr10	42990011	42990211	+	875.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153349, intron 1 of 2)	B3|SINE|B2	1051.0	NR_153349	327749.0	Mm.428887	NR_153349		Gm5079	C230040G06	predicted gene 5079	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-96896055-3	chr11	96895955	96896155	+	923.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20459.0	NM_001308183	80280.0	Mm.28297	NM_030248	ENSMUSG00000018669	Cdk5rap3	1810007E24Rik|BC002318|C53|C81486|HSF-27|IC53|LZAP|MST016	CDK5 regulatory subunit associated protein 3	protein-coding	4.73570071089377	4.84934286920399	4.45098373922998	4.38147407614905	3.58831585281121	3.07215727686487	3.73608077721338	3.11852827922327	-1.63799878666156	0.000256130394098023	0.0065199132992675
Merged-chr1-36082899-2	chr1	36082799	36082999	+	901.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_015818, intron 1 of 1)	intron (NM_015818, intron 1 of 1)	14499.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-118995271-4	chr7	118995203	118995403	+	905.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001195774)	promoter-TSS (NM_001195774)	-92.0	NM_001195774	64297.0	Mm.103439	NM_022420	ENSMUSG00000008734	Gprc5b	AW125761|Raig2	G protein-coupled receptor, family C, group 5, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-11053252-4	chr19	11053181	11053381	+	912.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2715.0	NR_102366	107350.0	Mm.6381	NM_001177351	ENSMUSG00000075010	AW112010	-	expressed sequence AW112010	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81189296-2	chr10	81189196	81189396	+	826.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001190473, intron 2 of 8)	B2_Mm2|SINE|B2	5378.0	NM_007828	13144.0	Mm.10294	NM_007828	ENSMUSG00000034974	Dapk3	ZIPK|dlk	death-associated protein kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-138251591-2	chr4	138251491	138251691	+	600.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001099631, intron 1 of 9)	intron (NM_001099631, intron 1 of 9)	1180.0	NM_001099631	230863.0	Mm.482408	NM_001099631	ENSMUSG00000045349	Sh2d5	BC036961	SH2 domain containing 5	protein-coding	1.68143507499707	1.90682746841851	1.41269449110127	0.975284966798513	0.951809346742292	1.92237914933341	1.42354881698372	2.23969143910525	0.582627925929853	0.634604326277047	0.982417279970648
Merged-chr9-78615720-3	chr9	78615646	78615846	+	912.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_153098, exon 1 of 33)	5' UTR (NM_153098, exon 1 of 33)	200.0	NM_153098	235505.0	Mm.32955	NM_153098	ENSMUSG00000046186	Cd109	9930012E15Rik|AI480638|GARP	CD109 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-94053633-1	chr1	94053533	94053733	+	816.666687	f0_balb.idr	Intergenic	Tigger8|DNA|TcMar-Tigger	-1080.0	NM_008798	18566.0	Mm.5024	NM_008798	ENSMUSG00000026285	Pdcd1	Ly101|PD-1|Pdc1	programmed cell death 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-172456137-4	chr1	172456048	172456248	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19212.0	NM_029612	98365.0	Mm.150050	NM_029612	ENSMUSG00000026548	Slamf9	2310026I04Rik|AI462096|CD2F-10|CD84-H1|Cd2f10|SF2001	SLAM family member 9	protein-coding	4.85335800670022	3.49227856737583	3.66466906909914	4.11814433636142	4.28750395483489	4.21177482471244	4.14193461030809	4.44047421614079	0.15006107539898	0.744275264818819	0.998431161219273
Merged-chr19-46040400-3	chr19	46040326	46040526	+	772.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010697)	promoter-TSS (NM_010697)	-805.0	NM_010697	16825.0	Mm.327442	NM_010697	ENSMUSG00000025223	Ldb1	CLIM2|NLI	LIM domain binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83964371-4	chr11	83964267	83964467	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_194341)	promoter-TSS (NM_194341)	-64.0	NM_194341	217030.0	Mm.82680	NM_194341	ENSMUSG00000034940	Synrg	Ap1gbp1|SYNG	synergin, gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-54610129-3	chr14	54610044	54610244	+	843.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-4236.0	NM_028890	74359.0	Mm.79815	NM_028890	ENSMUSG00000022179	4931414P19Rik	Rtfc	RIKEN cDNA 4931414P19 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-97251824-4	chr7	97251740	97251940	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162477, intron 2 of 9)	intron (NM_001162477, intron 2 of 9)	74124.0	NM_001177412	244144.0	Mm.297541	NM_001177412	ENSMUSG00000035713	Usp35	Gm1088|Gm493	ubiquitin specific peptidase 35	protein-coding	5.07290391496981	4.72096014275684	4.97631097031924	5.35873722963216	4.99505978307526	4.58393117038108	5.15866858435974	5.45878572704022	0.0398671289013503	0.90329840437309	0.998431161219273
Merged-chr11-4187169-2	chr11	4187069	4187269	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134023, intron 1 of 8)	CpG	336.0	NM_134023	103724.0	Mm.28140	NM_134023	ENSMUSG00000034412	Tbc1d10a	AI447804|EPI64|Tbc1d10|mFLJ00288	TBC1 domain family, member 10a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-56429587-3	chr12	56429477	56429677	+	794.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-83683.0	NM_145442	217588.0	Mm.25656	NM_145442	ENSMUSG00000021028	Mbip	4933408E06Rik	MAP3K12 binding inhibitory protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126755920-4	chr8	126755803	126756003	+	989.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-93117.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	2.25278225010597	1.68792729801705	2.98982565642113	2.37735667616915	1.8886021526523	2.86958471252157	1.64748531375943	2.84823966403991	0.0383545512288221	0.965715773255079	0.998431161219273
Merged-chr11-100699756-2	chr11	100699656	100699856	+	947.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030150, intron 7 of 12)	PB1D10|SINE|Alu	4515.0	NM_030150	80861.0	Mm.271830	NM_030150	ENSMUSG00000017830	Dhx58	B430001I08Rik|D11Lgp2e|LPG2|Lgp2|RLR-3	DEXH (Asp-Glu-X-His) box polypeptide 58	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-38351007-3	chr2	38350915	38351115	+	882.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010710)	promoter-TSS (NM_010710)	-293.0	NM_010710	16870.0	Mm.142856	NM_010710	ENSMUSG00000000247	Lhx2	LH2A|Lh-2|Lim2|ap|apterous	LIM homeobox protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-186705363-4	chr1	186705268	186705468	+	934.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001329107, exon 1 of 8)	5' UTR (NM_001329107, exon 1 of 8)	621.0	NM_009367	21808.0	Mm.18213	NM_009367	ENSMUSG00000039239	Tgfb2	BB105277|Tgf-beta2|Tgfb-2	transforming growth factor, beta 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-76930098-2	chr12	76929998	76930198	+	651.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32150.0	NM_008558	17187.0	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-65374225-3	chr14	65374109	65374309	+	726.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199029, intron 1 of 9)	intron (NM_199029, intron 1 of 9)	15533.0	NM_199029	380912.0	Mm.270087	NM_199029	ENSMUSG00000034522	Zfp395	BC053701|Gm910	zinc finger protein 395	protein-coding	1.7071953299058	1.89183346668364	2.2814586514901	2.52591763739028	2.64751358880675	1.9045124174299	2.29899143765803	2.70467765667034	0.67556632597098	0.436204331087022	0.908082052813549
Merged-chr17-33931717-4	chr17	33931601	33931801	+	836.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009059, intron 2 of 17)	intron (NM_009059, intron 2 of 17)	1807.0	NM_009059	19732.0	Mm.43777	NM_009059	ENSMUSG00000041354	Rgl2	KE1.5|Rab2l|Rgt2|Rlf	ral guanine nucleotide dissociation stimulator-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-92180440-4	chr1	92180274	92180474	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207225)	promoter-TSS (NM_207225)	-33.0	NM_207225	208727.0	Mm.318567	NM_207225	ENSMUSG00000026313	Hdac4	4932408F19Rik|HD4	histone deacetylase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-52316813-1	chr12	52316713	52316913	+	541.0	f1_balb.idr	Intergenic	Lx8|LINE|L1	163796.0	NR_136881	102638611.0	Mm.363799	NR_136881	ENSMUSG00000111982	Gm35135	-	predicted gene, 35135	ncRNA	1.27107710500514	0.822346118057946	0.803987244227133	1.48427217888024	1.28302291501492	1.74466722965374	0.808084060127328	2.26580806880486	1.73221296097913	0.204233286682934	0.69167790036705
Merged-chr9-53699611-1	chr9	53699511	53699711	+	574.0	f1_balb.idr	intron (NM_175562, intron 1 of 1)	intron (NM_175562, intron 1 of 1)	6621.0	NM_175562	270160.0	Mm.290285	NM_175562	ENSMUSG00000055069	Rab39	C230094F14Rik|Rab39a	RAB39, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70060175-2	chr14	70060075	70060275	+	651.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_028560)	TTS (NM_028560)	-17270.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46844786-4	chr8	46844708	46844908	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152560, intron 6 of 7)	intron (NR_152560, intron 6 of 7)	105063.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128820718-1	chr2	128820618	128820818	+	959.0	f1_c57bl6.idr	intron (NM_001355629, intron 1 of 18)	intron (NM_001355629, intron 1 of 18)	2415.0	NM_001355629	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	-2.18308165884198	-2.15547475440471	-2.16382331017202	-2.1706810624505	-2.18114370519566	-2.15366558754311	-2.03057248461154	-2.16945352807143	0.759018020146679	0.829933115115583	1
Merged-chr7-80216626-1	chr7	80216526	80216726	+	548.0	f1_balb.idr	intron (NM_001360135, intron 5 of 13)	intron (NM_001360135, intron 5 of 13)	16179.0	NM_001291276	23991.0	Mm.30217	NM_011870	ENSMUSG00000030538	Cib1	Cibkip|Kip|Prkdcip	calcium and integrin binding 1 (calmyrin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-31189686-2	chr6	31189586	31189786	+	715.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_110470, intron 1 of 2)	intron (NR_110470, intron 1 of 2)	28788.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171270918-3	chr1	171270836	171271036	+	850.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020579, intron 1 of 7)	intron (NM_020579, intron 1 of 7)	608.0	NM_020579	57370.0	Mm.274011	NM_020579	ENSMUSG00000052423	B4galt3	9530061M23Rik|AA104562|AW125175|ESTM26|ESTM6|R74981	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-79499653-2	chr3	79499553	79499753	+	947.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162999, intron 8 of 16)	MusHAL1|LINE|L1	68026.0	NM_001162999	329679.0	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-146809342-1	chr5	146809242	146809442	+	703.0	f1_balb.idr	Intergenic	B1_Mur4|SINE|Alu	-14386.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	0.90911142467217	1.56309893682883	0.947345794119442	1.81090084589579	1.51996896800624	1.84571052038429	1.17708711148473	2.00179122551345	0.988423186262912	0.433571899340398	0.905745034524566
Merged-chr5-55629448-2	chr5	55629348	55629548	+	570.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB-int|LTR|ERVL-MaLR	1279456.0	NR_038045	330086.0	Mm.254449	NM_177871	ENSMUSG00000105912	Gm10440	D130065D13	predicted gene 10440	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-3233255-1	chr16	3233155	3233355	+	736.0	f1_balb.idr	Intergenic	Intergenic	-359143.0	NM_146860	258859.0	Mm.377723	NM_146860	ENSMUSG00000051003	Olfr161	MOR131-1|OR912-47M6	olfactory receptor 161	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-73590215-2	chr15	73590115	73590315	+	596.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357747, intron 2 of 7)	intron (NM_001357747, intron 2 of 7)	6311.0	NM_001168255	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-165641266-2	chr1	165641166	165641366	+	648.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6725.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-30265350-3	chr12	30265243	30265443	+	768.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001324520, intron 8 of 16)	ORR1E|LTR|ERVL-MaLR	108032.0	NM_172951	268534.0	Mm.279765	NM_172951	ENSMUSG00000020672	Sntg2	2210008K22Rik|9530013L23|BB121248|G2syn|Syn5	syntrophin, gamma 2	protein-coding	1.13203445916819	0.786458420483202	2.05999908366165	0.998976124168978	0.712886476845794	0.791851761093415	2.66331276576851	1.6776770840437	1.01632787751681	0.45844546856874	0.919607527898796
Merged-chr19-40873450-4	chr19	40873355	40873555	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045343, intron 1 of 4)	CpG	5139.0	NR_045343	381223.0	Mm.136844	NR_045343		E030044B06Rik	E030007J07Rik|Gm1618	RIKEN cDNA E030044B06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-49272437-4	chr13	49272338	49272538	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015759, intron 14 of 17)	intron (NM_015759, intron 14 of 17)	-23732.0	NM_028340	66329.0	Mm.34308	NM_025491	ENSMUSG00000021384	Susd3	1700017I11Rik|2810440J20Rik	sushi domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-26980819-3	chr8	26980710	26980910	+	877.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001101502, exon 2 of 2)	3' UTR (NM_001101502, exon 2 of 2)	3474.0	NM_001110508	353310.0	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-61121820-2	chr18	61121720	61121920	+	745.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037859, intron 11 of 21)	L2b|LINE|L2	4352.0	NR_105949	102466212.0		NR_105949	ENSMUSG00000098389	Mir6983	Gm27496|mmu-mir-6983	microRNA 6983	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180777825-4	chr1	180777701	180777901	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	35804.0	NM_008210	15078.0	Mm.138832	NM_008210	ENSMUSG00000060743	H3f3a	EyeLinc14|H3.3A	H3 histone, family 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55265455-3	chr19	55265356	55265556	+	907.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027976, intron 1 of 21)	intron (NM_027976, intron 1 of 21)	12087.0	NM_027976	433256.0	Mm.292056	NM_027976	ENSMUSG00000024981	Acsl5	1700030F05Rik|ACS2|ACS5|Facl5	acyl-CoA synthetase long-chain family member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-71644253-4	chr2	71644144	71644344	+	861.6124880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_039557, intron 2 of 3).2	(CA)n|Simple_repeat|Simple_repeat	-75173.0	NR_037979	381371.0	Mm.330284	NM_201366	ENSMUSG00000064263	Platr26	Gm1631	pluripotency associated transcript 26	ncRNA	2.01581836070166	2.25125708654078	2.46942903833328	2.51947170536674	2.60849843574128	3.10082155905841	3.00102636862668	2.73789342233931	1.14094490704331	0.121563982032225	0.547083517037748
Merged-chr2-171265873-2	chr2	171265773	171265973	+	682.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	534066.0	NM_001163686	76829.0	Mm.41633	NM_029761	ENSMUSG00000027560	Dok5	2700055C10Rik	docking protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-76710618-2	chr12	76710518	76710718	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013675)	promoter-TSS (NM_013675)	-71.0	NM_013675	20741.0	Mm.32881	NM_013675	ENSMUSG00000021061	Sptb	AI842465|D330027P03Rik|Gm1301|Spnb-1|Spnb1|ja|jaundiced|mKIAA4219	spectrin beta, erythrocytic	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-7916363-2	chr9	7916263	7916463	+	553.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C|LTR|ERVK	-43193.0	NM_007464	11796.0	Mm.2026	NM_007464	ENSMUSG00000032000	Birc3	AW107670|Api1|Api2|Birc2|C-IAP2|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF49|cIAP-1|cIAP-2|cIAP1|cIAP2	baculoviral IAP repeat-containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118571406-2	chr9	118571306	118571506	+	692.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_018748, intron 21 of 23)	intron (NM_018748, intron 21 of 23)	-35303.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-100632091-2	chr15	100631991	100632191	+	823.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033872, intron 2 of 3)	intron (NM_001033872, intron 2 of 3)	3468.0	NM_001285414	207818.0	Mm.26282	NM_174992	ENSMUSG00000053559	Smagp	-	small cell adhesion glycoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-114608723-2	chr5	114608625	114608825	+	659.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001004180, intron 2 of 2)	intron (NM_001004180, intron 2 of 2)	40474.0	NM_001004180	433940.0	Mm.194212	NM_001004180	ENSMUSG00000041930	Fam222a	-	family with sequence similarity 222, member A	protein-coding	-0.119282861012094	0.633947989742964	-0.108217720695303	0.324539029035636	-0.118253461825832	0.26862811763329	-0.107031511762189	-0.111645365081517	-2.0085324338463	0.391017629375855	1
Merged-chr3-52199548-3	chr3	52199452	52199652	+	757.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68785.0	NM_019739	56458.0	Mm.29891	NM_019739	ENSMUSG00000044167	Foxo1	AI876417|Afxh|FKHR|Fkhr1|Foxo1a	forkhead box O1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-58405540-3	chr10	58405432	58405632	+	889.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359116, intron 2 of 9)	intron (NM_001359116, intron 2 of 9)	11159.0	NM_001346676	110829.0	Mm.57734	NM_026148	ENSMUSG00000019920	Lims1	2310016J22Rik|4921524A02Rik|AI507642|AU021743|AW551584|C430041B13Rik|Lims1l|PINCH|PINCH1	LIM and senescent cell antigen-like domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-84266377-2	chr17	84266277	84266477	+	762.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_183021, intron 30 of 37)	PB1D7|SINE|Alu	-78430.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-46153097-1	chr14	46152997	46153197	+	645.0	f0_balb.idr	Intergenic	Intergenic	69070.0	NR_002875	218963.0	Mm.282093	NR_002875		Gm1821	-	ubiquitin pseudogene	pseudo	0.77656382529571	0.840681412684534	0.820428494072812	0.804323377116757	2.00127986602295	1.79295263913141	1.72142434145864	2.12154206729271	5.34367927528308	0.000188455614322782	0.00512331675372675
Merged-chr11-117242978-1	chr11	117242878	117243078	+	603.0	f0_balb.idr	intron (NM_001113486, intron 2 of 11)	intron (NM_001113486, intron 2 of 11)	-23268.0	NM_001113487	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-124623036-1	chr2	124622936	124623136	+	683.0	f0_balb.idr	intron (NM_001291000, intron 1 of 18)	intron (NM_001291000, intron 1 of 18)	12740.0	NM_172537	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-13296702-2	chr1	13296602	13296802	+	925.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008678, intron 1 of 22)	intron (NM_008678, intron 1 of 22)	75727.0	NM_001302702	17978.0	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-99068658-4	chr11	99068582	99068782	+	938.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172564, intron 12 of 12)	B4A|SINE|B4	20624.0	NM_172564	217169.0	Mm.262067	NM_172564	ENSMUSG00000017607	Tns4	9930017A07Rik|AA589547|AU016405|Cten	tensin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5784146-4	chr17	5784031	5784231	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14526.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-102768125-2	chr2	102768025	102768225	+	597.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077514, intron 9 of 10)	intron (NM_001077514, intron 9 of 10)	-21365.0	NR_153853	102637542.0	Mm.371582	NR_153852		Gm13872	-	predicted gene 13872	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-14702402-1	chr8	14702302	14702502	+	800.0	f0_balb.idr	intron (NM_172910, intron 5 of 15)	intron (NM_172910, intron 5 of 15)	-186134.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-155442650-2	chr1	155442550	155442750	+	990.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25206.0	NM_011273	19775.0	Mm.266215	NM_011273	ENSMUSG00000026469	Xpr1	Rmc-1|Rmc1|Sxv|Syg1|XR	xenotropic and polytropic retrovirus receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-100911113-2	chr15	100911013	100911213	+	572.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077499, intron 1 of 26)	RSINE1|SINE|B4	-25158.0	NM_011323	20273.0	Mm.385012	NM_011323	ENSMUSG00000023033	Scn8a	AI853486|C630029C19Rik|NaCh6|Nav1.6|dmu|med|mnd-2|mnd2|nmf2|nmf335|nmf58|nur14|seal	sodium channel, voltage-gated, type VIII, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-103735085-4	chr3	103734884	103735084	+	855.238098	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_133859)	TTS (NM_133859)	3017.0	NM_133859	99543.0	Mm.211535	NM_133859	ENSMUSG00000027848	Olfml3	2810002E22Rik|AI115209|AW550633|HNOEL-iso|ONT3|mONT3	olfactomedin-like 3	protein-coding	-0.630573347133566	-0.618163859239218	-0.274922951233355	-0.625352252463648	-0.629795386282982	0.154287029152031	-0.621321941754998	-0.624803991454427	1.50519823393369	0.594334686316284	1
Merged-chr8-120599736-4	chr8	120599637	120599837	+	856.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-10662.0	NM_178856	272551.0	Mm.275910	NM_178856	ENSMUSG00000031821	Gins2	2210013I18Rik|4833427B12Rik|AI323585|Pfs2	GINS complex subunit 2 (Psf2 homolog)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-12938389-4	chr18	12938287	12938487	+	894.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207530, intron 1 of 27)	intron (NM_207530, intron 1 of 27)	3454.0	NM_207530	64291.0	Mm.259470	NM_020573	ENSMUSG00000044252	Osbpl1a	G430090F17Rik|Gm753|ORP-1|Osbpl1b	oxysterol binding protein-like 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-68058530-4	chr18	68058436	68058636	+	996.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172631, intron 1 of 5)	intron (NM_172631, intron 1 of 5)	125363.0	NM_172631	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52962581-3	chr13	52962491	52962691	+	882.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	18448.0	NM_017373	18030.0	Mm.136604	NM_017373	ENSMUSG00000056749	Nfil3	AV225605|E4BP4	nuclear factor, interleukin 3, regulated	protein-coding	1.55211945345369	1.40893351863384	1.60222353660209	1.74026483865238	0.791445710966854	1.42052529520972	0.822782948229164	0.810048135293159	-2.60242139891618	0.0684638266643239	0.392527393589626
Merged-chr2-104110285-4	chr2	104110184	104110384	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007652, intron 2 of 3)	intron (NM_007652, intron 2 of 3)	-12485.0	NM_026634	68243.0	Mm.158191	NM_026634	ENSMUSG00000032671	A930018P22Rik	-	RIKEN cDNA A930018P22 gene	protein-coding	2.34699659493705	2.79950250260089	1.80476628174187	3.03508196212844	2.71445404658969	2.34481749999925	3.465102115806	4.09388185433719	1.31136510599235	0.0810146392927864	0.434840579586125
Merged-chr5-135476420-4	chr5	135476339	135476539	+	992.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146001, intron 1 of 30)	intron (NM_146001, intron 1 of 30)	68683.0	NM_146001	215114.0	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-128610914-4	chr8	128610819	128611019	+	905.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74735.0	NM_010578	16412.0	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-99492908-3	chr9	99492828	99493028	+	574.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028768, intron 18 of 21)	intron (NM_028768, intron 18 of 21)	22507.0	NR_028123	69797.0	Mm.307159	NR_028123	ENSMUSG00000046242	1600029I14Rik	-	RIKEN cDNA 1600029I14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-170292597-2	chr1	170292497	170292697	+	875.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13735.0	NM_001198955	665574.0	Mm.65316	NM_001198955	ENSMUSG00000102752	Gm7694	EG665574	predicted gene 7694	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-98928742-4	chr15	98928654	98928854	+	989.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(GCTTG)n|Simple_repeat|Simple_repeat	5636.0	NM_011654	22143.0	Mm.392113	NM_011654	ENSMUSG00000023004	Tuba1b	Tuba2	tubulin, alpha 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-94583649-2	chr3	94583549	94583749	+	963.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029721)	promoter-TSS (NM_029721)	-933.0	NM_029721	76742.0	Mm.28160	NM_029721	ENSMUSG00000028136	Snx27	5730552M22Rik|ESTM45|ESTM47|R75405	sorting nexin family member 27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-156199741-2	chr4	156199641	156199841	+	921.666626	f1_balb.idr|f1_c57bl6.idr	exon (NM_015783, exon 2 of 2)	exon (NM_015783, exon 2 of 2)	1077.0	NM_015783	100038882.0	Mm.4950	NM_015783	ENSMUSG00000035692	Isg15	G1p2|IGI15|IP17|Irfp|UCRP	ISG15 ubiquitin-like modifier	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-25805128-4	chr16	25805034	25805234	+	964.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127262, intron 1 of 10)	intron (NM_001127262, intron 1 of 10)	3218.0	NM_001127264	22061.0	Mm.20894	NM_011641	ENSMUSG00000022510	Trp63	AI462811|Ket|P51/P63|P63|P73l|Tp63|Trp53rp1	transformation related protein 63	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-45668670-2	chr14	45668570	45668770	+	740.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10527.0	NM_001042719	114874.0	Mm.121918	NM_176845	ENSMUSG00000037697	Ddhd1	Mir5131|PA-PLA1	DDHD domain containing 1	protein-coding	-0.293066995360717	-0.281157904550273	-0.285077350101721	0.113971785834391	0.247016991331629	-0.280272008880678	-0.284214379333521	0.00301823809258139	1.08458978133671	0.662934095781992	1
Merged-chr4-3743406-4	chr4	3743298	3743498	+	880.25415	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 4 of 12)	intron (NM_001111096, intron 4 of 12)	28434.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-88108225-4	chr6	88108106	88108306	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3948.0	NR_105795	102465196.0		NR_105795	ENSMUSG00000099095	Mir6376	Gm27778|mmu-mir-6376	microRNA 6376	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-21453645-4	chr13	21453556	21453756	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001013786)	promoter-TSS (NM_001013786)	71.0	NM_001013786	432731.0	Mm.390557	NM_001013786	ENSMUSG00000022228	Zscan26	BC068174|Zfp187|Znf187	zinc finger and SCAN domain containing 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95882434-4	chr3	95882334	95882534	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033302)	promoter-TSS (NM_001033302)	-206.0	NM_001033302	229599.0	Mm.331218	NM_001033302	ENSMUSG00000038550	Ciart	Chrono|Gm129	circadian associated repressor of transcription	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-117497320-3	chr6	117497231	117497431	+	959.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152214, intron 2 of 2)	RMER19B|LTR|ERVK	2096.0	NR_152214	100126203.0	Mm.217172	NR_152214		6820426E19Rik	Gm43983	RIKEN cDNA 6820426E19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26451775-3	chr17	26451689	26451889	+	776.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36824.0	NM_001081656	240055.0	Mm.133211	NM_001081656	ENSMUSG00000034413	Neurl1b	C230078M08Rik|EG240055	neuralized E3 ubiquitin protein ligase 1B	protein-coding	-1.23826193677681	-1.21241040182355	-1.22270105026776	-0.934241458926562	-1.23783648736863	-1.21018037537722	-1.22037147302458	-0.929982742503718	0.0323590357436516	0.9924297640193	1
Merged-chr10-26799043-4	chr10	26798953	26799153	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176837, intron 1 of 14)	intron (NM_176837, intron 1 of 14)	26541.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10839690-4	chr19	10839603	10839803	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2841.0	NM_023044	65221.0	Mm.27387	NM_023044	ENSMUSG00000024737	Slc15a3	Ci1|cI-1	solute carrier family 15, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-110891509-2	chr9	110891409	110891609	+	571.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153354, intron 15 of 25)	intron (NR_153354, intron 15 of 25)	11187.0	NM_001146060	235633.0	Mm.86338	NM_146228	ENSMUSG00000044037	Als2cl	79H19D|79H19E|BC022645|D930044G19Rik|mRn.49018	ALS2 C-terminal like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-3348145-4	chr5	3348041	3348241	+	802.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 2 of 7)	intron (NM_009873, intron 2 of 7)	4248.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114682791-2	chr11	114682691	114682891	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_053273, intron 1 of 13)	intron (NM_053273, intron 1 of 13)	7323.0	NM_053273	117160.0	Mm.271934	NM_053273	ENSMUSG00000034714	Ttyh2	1110001A03Rik	tweety family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-25283960-4	chr12	25283875	25284075	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	154801.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	3.68422942427934	3.98332295187523	4.73003100776139	4.39657328640349	3.64530052302327	4.01256002288224	5.01561251250939	4.41744122844698	0.149301293447512	0.74884020642186	0.998431161219273
Merged-chr10-61423029-4	chr10	61422946	61423146	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013611, exon 2 of 3)	exon (NM_013611, exon 2 of 3)	5074.0	NM_013611	18119.0	Mm.57195	NM_013611	ENSMUSG00000037171	Nodal	Tg.413d	nodal	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-150395812-3	chr1	150395731	150395931	+	850.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133780, intron 3 of 51)	RMER6B|LTR|ERVK	-2751.0	NM_001357579	226499.0	Mm.222093	NM_145511	ENSMUSG00000006010	BC003331	1810053E15Rik|Odr4|odr-4	cDNA sequence BC003331	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19358903-2	chr7	19358803	19359003	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145822, intron 2 of 2)	B1_Mur4|SINE|Alu	580.0	NM_145822	70333.0	Mm.171370	NM_145822	ENSMUSG00000047649	Cd3eap	1190028F09|2610103M17Rik|ASE-1|Ase1|CAST|PAF49	CD3E antigen, epsilon polypeptide associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-142392676-1	chr7	142392576	142392776	+	696.0	f1_balb.idr	Intergenic	Intergenic	-4806.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	1.65274869531861	2.6839461691488	1.7990852105171	2.4294700707231	1.50662133304309	1.1876404352195	2.68778401451741	1.37935293965586	-0.837595830058093	0.427538888317799	0.902392427013133
Merged-chr5-3802310-2	chr5	3802210	3802410	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033173)	promoter-TSS (NR_033173)	814.0	NM_001289528	70797.0	Mm.130148	NM_001003909	ENSMUSG00000040351	Ankib1	2310061P20Rik|4631416I11Rik|AW494740|C80642|mKIAA1386	ankyrin repeat and IBR domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-100188260-3	chr12	100188156	100188356	+	883.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045282, exon 1 of 3)	non-coding (NR_045282, exon 1 of 3)	288.0	NR_045282	100038378.0	Mm.387075	NR_045282	ENSMUSG00000072884	Gm10433	-	predicted gene 10433	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-64758903-2	chr16	64758803	64759003	+	658.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12036.0	NM_026273	67609.0	Mm.212157	NM_026273	ENSMUSG00000059920	4930453N24Rik	AI649104|din	RIKEN cDNA 4930453N24 gene	protein-coding	-0.91086064057667	-0.537920390516943	-0.904607194507997	-0.906958879780987	-0.910280420471427	-0.388080308842497	-0.903934751527494	-0.906548113875136	0.723305748842633	0.814917440146965	1
Merged-chr9-44652185-4	chr9	44652081	44652281	+	948.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21052.0	NM_001277851	58866.0	Mm.45380	NM_021481	ENSMUSG00000032098	Treh	2210412M19Rik	trehalase (brush-border membrane glycoprotein)	protein-coding	3.64387953645271	2.71387403855965	2.75081278613858	3.24203527667327	3.30445596841685	3.54942987532728	1.60864500659394	2.68445077774818	-0.29226344830627	0.695010064749985	0.997870549741095
Merged-chr10-93267730-2	chr10	93267657	93267857	+	590.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001322265, intron 2 of 4)	intron (NM_001322265, intron 2 of 4)	43402.0	NM_001322268	13713.0	Mm.4454	NM_013508	ENSMUSG00000008398	Elk3	D430049E23Rik|Erp|Etrp|Net|Sap-2	ELK3, member of ETS oncogene family	protein-coding	1.99066884291377	1.2367541390759	1.47097205511031	3.01156409060677	2.12349327573235	1.24435466203898	2.79249332986869	2.54001811371564	0.325783486681413	0.761065515271669	0.998431161219273
Merged-chr9-123021319-4	chr9	123021249	123021449	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025339)	promoter-TSS (NM_025339)	23.0	NM_001164823	66079.0	Mm.482265	NM_025339	ENSMUSG00000066233	Tmem42	0610027O18Rik|4933429E06Rik|AV003444|D9Ertd662e	transmembrane protein 42	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-95384666-5	chr11	95384650	95384850	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357797)	promoter-TSS (NM_001357797)	-106.0	NM_016752	110172.0	Mm.4593	NM_016752	ENSMUSG00000020873	Slc35b1	UGTrel1|Ugalt2	solute carrier family 35, member B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-136825537-2	chr6	136825437	136825637	+	672.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_021714, exon 3 of 12)	exon (NM_021714, exon 3 of 12)	2679.0	NM_021714	60321.0	Mm.141197	NM_021714	ENSMUSG00000030216	Wbp11	2510026P17Rik|D6Wsu113e|Npwbp|SIPP1	WW domain binding protein 11	protein-coding	1.05231880547503	0.933229391731621	0.13471459386714	0.128712916574591	0.427357000626886	0.144155624850301	0.136421971172296	0.129764713977843	-2.79331528982404	0.188447982500012	1
Merged-chr8-35054162-1	chr8	35054062	35054262	+	668.0	f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-88472.0	NM_175091	21951.0	Mm.88364	NM_175091	ENSMUSG00000031529	Tnks	4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	protein-coding	1.97967072168202	2.83323669160889	1.22171835942089	2.49731773216536	1.87352148323998	2.49092268668812	1.22884634184441	2.10323428953208	-0.622752492128727	0.550596702712782	0.958882219733107
Merged-chr19-25058031-4	chr19	25057934	25058134	+	975.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028785, intron 2 of 47)	intron (NM_028785, intron 2 of 47)	58505.0	NM_028785	76088.0	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	5.82131693185328	4.64323337477545	5.65876759289695	5.68759331499747	5.17226870531742	4.98847795186285	4.68820027811129	5.75386384971073	-0.365982648323826	0.283310531752172	0.786599759324876
Merged-chr7-28439563-2	chr7	28439463	28439663	+	546.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290550, intron 1 of 5)	B1_Mus2|SINE|Alu	-1374.0	NM_001039192	63986.0	Mm.194536	NM_022024	ENSMUSG00000060791	Gmfg	0610039G16Rik|2310057N07Rik|AI324845	glia maturation factor, gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3763963-2	chr4	3763863	3764063	+	580.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 10 of 12)	intron (NM_001111096, intron 10 of 12)	48999.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-103425164-4	chr5	103425063	103425263	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011204)	promoter-TSS (NM_011204)	-29.0	NM_011204	19249.0	Mm.3414	NM_011204	ENSMUSG00000034573	Ptpn13	AI324989|PTP-BL|PTPL1|Ptpri|RIP	protein tyrosine phosphatase, non-receptor type 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-29251552-1	chr2	29251452	29251652	+	555.0	f1_c57bl6.idr	intron (NR_029460, intron 1 of 1)	CpG	1441.0	NR_029460	76220.0	Mm.330108	NR_029460	ENSMUSG00000079499	6530402F18Rik	mKIAA1857	RIKEN cDNA 6530402F18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-14244600-4	chr9	14244486	14244686	+	996.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31715.0	NM_030261	75747.0	Mm.325126	NM_030261	ENSMUSG00000032009	Sesn3	5630400E15Rik|BC003348|SEST3	sestrin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-81334948-2	chr7	81334848	81335048	+	637.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	10286.0	NM_009092	20068.0	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-37640444-4	chr3	37640354	37640554	+	828.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305441, intron 1 of 1)	CpG	507.0	NM_011896	24063.0	Mm.330986	NM_011896	ENSMUSG00000037211	Spry1	sprouty1|spry-1	sprouty RTK signaling antagonist 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-29646659-2	chr18	29646559	29646759	+	671.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-150243.0	NR_045391	78058.0	Mm.416952	NR_045391		4930578E11Rik	-	RIKEN cDNA 4930578E11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-122562682-4	chr10	122562573	122562773	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7218.0	NR_040616	319272.0	Mm.411763	NR_040616	ENSMUSG00000112095	A130077B15Rik	-	RIKEN cDNA A130077B15 gene	ncRNA	4.13231156378107	4.38147572489072	3.76430549386338	4.07270547674198	4.45910115256979	4.62458471110947	4.02220868578563	4.15078032668428	0.307549767517133	0.460770326903286	0.920953234475195
Merged-chr10-68248143-2	chr10	68248043	68248243	+	635.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023598, intron 2 of 9)	intron (NM_023598, intron 2 of 9)	30583.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76329235-2	chr15	76329135	76329335	+	686.625	f1_balb.idr|f1_c57bl6.idr	exon (NM_175399, exon 2 of 3)	exon (NM_175399, exon 2 of 3)	1838.0	NM_175399	109075.0	Mm.322752	NM_175399	ENSMUSG00000034259	Exosc4	1110039I09Rik|1500001N04Rik|Rrp41	exosome component 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-12256570-3	chr13	12256452	12256652	+	687.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081128, intron 1 of 32)	intron (NM_001081128, intron 1 of 32)	1561.0	NM_001081128	238505.0	Mm.40335	NM_001081128	ENSMUSG00000021311	Mtr	AI894170|D830038K18Rik|MS	5-methyltetrahydrofolate-homocysteine methyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129791767-2	chr4	129791695	129791895	+	684.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1M|LTR|ERVL-MaLR	-28684.0	NM_008974	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	-0.0603036753190295	0.278436189300463	-0.0515709885183341	0.0947819952447774	0.381720983411499	0.285419948707691	-0.050625964361938	0.0974465877250408	1.05700479882255	0.609363335111401	1
Merged-chr1-154061515-4	chr1	154061386	154061586	+	998.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-139701.0	NM_001204908	100503355.0	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	Gm10178|Gm203	zinc finger protein 648	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-116085502-3	chr9	116085400	116085600	+	663.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	89863.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-168542875-2	chr2	168542775	168542975	+	605.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037177, intron 3 of 6)	intron (NM_001037177, intron 3 of 6)	47490.0	NM_001291178	18019.0	Mm.116802	NM_010899	ENSMUSG00000027544	Nfatc2	AI607462|NF-ATc2|NF-ATp|NFAT1|NFAT1-D|Nfatp	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-144254961-7	chr5	144254811	144255011	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018772)	promoter-TSS (NM_018772)	-314.0	NM_018772	55950.0	Mm.38011	NM_018772	ENSMUSG00000047843	Bri3	I3	brain protein I3	protein-coding	1.06796478134274	0.607609836333441	1.18082873704172	1.02913241811503	1.07874930452154	0.609592657002549	0.600737652333651	1.14653377562712	-0.495411242504469	0.754744910211006	1
Merged-chr17-30012521-2	chr17	30012421	30012621	+	582.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_151443, intron 1 of 4)	intron (NR_151443, intron 1 of 4)	7482.0	NM_001356265	21769.0	Mm.220972	NM_148926	ENSMUSG00000044477	Zfand3	AW539211|TEG-27|Tex27	zinc finger, AN1-type domain 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-121953199-4	chr3	121953108	121953308	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172525)	promoter-TSS (NM_172525)	-21.0	NM_172525	214137.0	Mm.229287	NM_172525	ENSMUSG00000039831	Arhgap29	6720461J18Rik|A830014I19|AU040217|B130017I01Rik|C76601|Parg1	Rho GTPase activating protein 29	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-34964701-3	chr6	34964604	34964804	+	753.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025573, intron 2 of 7)	intron (NM_001025573, intron 2 of 7)	13295.0	NM_001025573	243753.0	Mm.440221	NM_001025573	ENSMUSG00000029847	Slc23a4	2010107G12Rik|Gm468	solute carrier family 23 member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-46253868-4	chr17	46253789	46253989	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001111142)	promoter-TSS (NM_001111142)	-276.0	NM_001111142	224813.0	Mm.70999	NM_001111142	ENSMUSG00000071073	Lrrc73	Gm88	leucine rich repeat containing 73	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123253428-3	chr5	123253351	123253551	+	753.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25261.0	NM_026000	67151.0	Mm.278997	NM_026000	ENSMUSG00000029440	Psmd9	1500011J20Rik|2610202L11Rik|Bridge-1|P27	proteasome (prosome, macropain) 26S subunit, non-ATPase, 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-66785642-4	chr15	66785548	66785748	+	914.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029841, intron 6 of 7)	intron (NM_001029841, intron 6 of 7)	46181.0	NM_001029841	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-119994355-2	chr9	119994255	119994455	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9613.0	NM_153287	215418.0	Mm.491094	NM_153287	ENSMUSG00000032515	Csrnp1	4931429D10Rik|Axud1|CSRNP-1|URAX1|taip-3	cysteine-serine-rich nuclear protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117181007-2	chr11	117180907	117181107	+	578.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18654.0	NM_001113486	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101214003-3	chr7	101213907	101214107	+	922.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199012, intron 8 of 20)	intron (NM_199012, intron 8 of 20)	88081.0	NM_001111111	73683.0	Mm.275744	NM_001111111	ENSMUSG00000047767	Atg16l2	2410118P20Rik	autophagy related 16-like 2 (S. cerevisiae)	protein-coding	1.47874022812977	1.42909849243346	0.848270346282144	1.56823494028138	1.88623278854643	1.28201331629096	0.851472873029585	1.03701934423684	-0.0661772805009731	0.960658756702061	0.998431161219273
Merged-chr10-80174195-2	chr10	80174095	80174295	+	807.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027207, intron 1 of 2)	intron (NM_027207, intron 1 of 2)	1251.0	NM_027207	69770.0	Mm.302754	NM_027207	ENSMUSG00000035595	1600002K03Rik	-	RIKEN cDNA 1600002K03 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-41377076-1	chr3	41376976	41377176	+	824.0	f0_balb.idr	Intergenic	Intergenic	116123.0	NR_040385	78706.0	Mm.366094	NR_040385	ENSMUSG00000097639	Platr4	C430002E04Rik	pluripotency associated transcript 4	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-31520058-4	chr17	31519948	31520148	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030087)	promoter-TSS (NM_030087)	-67.0	NM_030087	78330.0	Mm.28349	NM_030087	ENSMUSG00000024038	Ndufv3	1500032D16Rik	NADH dehydrogenase (ubiquinone) flavoprotein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-87830868-4	chr10	87830753	87830953	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16A|LTR|ERVL	-27412.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-108053656-2	chr9	108053556	108053756	+	652.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_177275, exon 1 of 1)	exon (NM_177275, exon 1 of 1)	497.0	NM_177275	320844.0	Mm.449806	NM_177275	ENSMUSG00000032593	Amigo3	E430002N15Rik|ali3|mKIAA1851	adhesion molecule with Ig like domain 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-137405910-4	chr6	137405813	137406013	+	975.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011216, intron 12 of 26)	intron (NM_011216, intron 12 of 26)	-4808.0	NM_001164402	19277.0	Mm.186361	NM_011216	ENSMUSG00000030223	Ptpro	D28|GLEPP1|PTPBK|PTPROt|PTPU2|PTPoc|PTPphi|Ptpn15|R-PTP-O	protein tyrosine phosphatase, receptor type, O	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-81741224-4	chr13	81741117	81741317	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028372, intron 1 of 1)	intron (NM_028372, intron 1 of 1)	29800.0	NM_028372	72852.0	Mm.31095	NM_028372	ENSMUSG00000051098	Mblac2	2900024O10Rik	metallo-beta-lactamase domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-81137300-4	chr5	81137183	81137383	+	822.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198702, intron 2 of 27)	MTD|LTR|ERVL-MaLR	115690.0	NM_198702	319387.0	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-103419360-4	chr11	103419260	103419460	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6696.0	NM_183034	353047.0	Mm.18556	NM_183034	ENSMUSG00000034247	Plekhm1	AP162|B2|BC038943|D330036J23Rik	pleckstrin homology domain containing, family M (with RUN domain) member 1	protein-coding	2.31571258246862	2.69553704753081	2.60778374259473	2.79610273625079	2.33404058729172	2.19096529418728	2.27254196660785	2.2067254701358	-0.822951447565087	0.288185093353166	0.793815200967874
Merged-chr16-43364317-4	chr16	43364229	43364429	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181058, intron 2 of 6)	intron (NM_181058, intron 2 of 6)	55867.0	NR_046026	626693.0	Mm.447083	NR_046026	ENSMUSG00000085499	Gm15713	-	predicted gene 15713	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-134467892-2	chr4	134467763	134467963	+	693.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019641)	promoter-TSS (NM_019641)	-457.0	NM_019641	16765.0	Mm.378957	NM_019641	ENSMUSG00000028832	Stmn1	19k|Lag|Lap18|Op18|P18|P19|Pig|Pp17|Pp18|Pp19|Pr22|Smn	stathmin 1	protein-coding	1.32838166178368	0.932756199892604	1.56755738092766	1.89615993733905	1.55346247197187	0.935995830845864	1.58071685150839	1.26612438122567	-0.445332831405654	0.727273266005036	0.998431161219273
Merged-chr10-93311343-2	chr10	93311244	93311444	+	620.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013508)	promoter-TSS (NM_013508)	-185.0	NM_001322265	13713.0	Mm.4454	NM_013508	ENSMUSG00000008398	Elk3	D430049E23Rik|Erp|Etrp|Net|Sap-2	ELK3, member of ETS oncogene family	protein-coding	1.16210323570823	0.709275275696616	0.692318482501453	1.69672597333087	1.02989638639191	0.713031271295767	2.17395671060157	1.09052111310276	0.849503107881725	0.556221151862558	0.960313897742752
Merged-chr14-121880615-1	chr14	121880515	121880715	+	1000.0	f1_c57bl6.idr	intron (NM_026861, intron 1 of 8)	intron (NM_026861, intron 1 of 8)	-1207.0	NR_130999	78312.0	Mm.188743	NR_130999	ENSMUSG00000102112	1810041H14Rik	-	RIKEN cDNA 1810041H14 gene	ncRNA	1.60002476588214	1.19998502597317	1.94658679188205	1.58053180322833	1.94974959823545	0.971467448990433	0.95464944682034	1.4617377387209	-0.626005725852352	0.619737707915516	0.978663311075481
Merged-chr9-77751315-4	chr9	77751210	77751410	+	987.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3225.0	NR_151778	14629.0	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-11005037-3	chr8	11004903	11005103	+	589.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081212, exon 1 of 2)	exon (NM_001081212, exon 1 of 2)	-2847.0	NR_046017	619321.0	Mm.403007	NR_046017	ENSMUSG00000096938	9530052E02Rik	-	RIKEN cDNA 9530052E02 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-32665469-4	chr19	32665346	32665546	+	937.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011864, exon 13 of 13)	exon (NM_011864, exon 13 of 13)	45441.0	NM_011864	23972.0	Mm.203916	NM_011864	ENSMUSG00000024899	Papss2	1810018P12Rik|AI159688|AtpsU2|Atpsk2|Sk2|bm	3'-phosphoadenosine 5'-phosphosulfate synthase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-79568665-3	chr17	79568564	79568764	+	658.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46236.0	NM_201361	381110.0	Mm.209801	NM_201361	ENSMUSG00000036368	Rmdn2	AW061290|Fam82a1|RMD-2|mRMD-2	regulator of microtubule dynamics 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-20309634-4	chr16	20309478	20309678	+	876.7041630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_183158, exon 9 of 9)	3' UTR (NM_183158, exon 9 of 9)	-7216.0	NM_001005767	381038.0	Mm.371737	NM_001005767	ENSMUSG00000033918	Parl	D16Ertd607e|PRO2207|PSARL1|PSENIP2|Psarl	presenilin associated, rhomboid-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-45413956-2	chr9	45413856	45414056	+	632.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7879.0	NM_007503	11936.0	Mm.22742	NM_007503	ENSMUSG00000059412	Fxyd2	Atp1g1	FXYD domain-containing ion transport regulator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-121961854-2	chr14	121961756	121961956	+	620.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_183031, intron 1 of 1)	intron (NM_183031, intron 1 of 1)	3337.0	NM_183031	321019.0	Mm.265618	NM_183031	ENSMUSG00000051212	Gpr183	Ebi2	G protein-coupled receptor 183	protein-coding	-0.063898291928422	0.0473222429166237	-0.0972110107067374	-0.378294739656912	-0.381366798094029	-0.3725592770921	-0.37546290560439	-0.377912045419273	-3.43118195485708	0.169817091512138	1
Merged-chr16-76228183-2	chr16	76228083	76228283	+	618.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	105570.0	NR_040575	78215.0	Mm.243885	NR_040575		4930578N18Rik	-	RIKEN cDNA 4930578N18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-64060204-3	chr7	64060099	64060299	+	803.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-93636.0	NM_001039104	17364.0	Mm.38875	NM_018752	ENSMUSG00000030523	Trpm1	4732499L03Rik|AI606771|Ltrpc1|Mlsn1	transient receptor potential cation channel, subfamily M, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-80132766-4	chr12	80132682	80132882	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033514)	promoter-TSS (NR_033514)	62.0	NR_033514	69548.0	Mm.269712	NR_033514		2310015A10Rik	5330419I17Rik	RIKEN cDNA 2310015A10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46928882-4	chr8	46928791	46928991	+	991.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57996.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-93237815-4	chr13	93237711	93237911	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45394.0	NM_001361537	100715.0	Mm.242865	NM_133905	ENSMUSG00000042167	Papd4	8030446C20Rik|AI649009|GLD-2|Gld2	PAP associated domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30942788-4	chr2	30942669	30942869	+	975.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10232.0	NM_133673	30934.0	Mm.249164	NM_133673	ENSMUSG00000026848	Tor1b	2610016F05Rik|DQ1|torsinB	torsin family 1, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118232284-4	chr11	118232211	118232411	+	978.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	16281.0	NM_001112699	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-79851473-2	chr10	79851373	79851573	+	697.75	f1_balb.idr|f1_c57bl6.idr	TTS (NR_029447)	TTS (NR_029447)	-2959.0	NM_001077363	19205.0	Mm.265610	NM_008956	ENSMUSG00000006498	Ptbp1	AA407203|AL033359|HNRPI|PTB-1|PTB2|PTB3|PTB4|Ptb|pPTB	polypyrimidine tract binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-123523852-4	chr9	123523755	123523955	+	786.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-5898.0	NM_001357485	83493.0	Mm.273671	NM_030692	ENSMUSG00000025240	Sacm1l	SAC1|Sac1p|mKIAA0851	SAC1 suppressor of actin mutations 1-like (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-11212183-4	chr2	11212082	11212282	+	997.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008859, intron 1 of 17)	intron (NM_008859, intron 1 of 17)	39800.0	NM_008859	18761.0	Mm.329993	NM_008859	ENSMUSG00000026778	Prkcq	A130035A12Rik|AW494342|PKC-0|PKC-theta|PKCtheta|Pkcq	protein kinase C, theta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-7203766-2	chr19	7203666	7203866	+	683.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_134150, intron 3 of 6)	intron (NM_134150, intron 3 of 6)	2518.0	NM_134150	107260.0	Mm.203921	NM_134150	ENSMUSG00000024767	Otub1	AI850305	OTU domain, ubiquitin aldehyde binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-74494587-4	chr11	74494494	74494694	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001015046, intron 2 of 24)	intron (NM_001015046, intron 2 of 24)	95564.0	NM_001015046	380711.0	Mm.425690	NM_001015046	ENSMUSG00000038807	Rap1gap2	AU067654|Garnl4|Gm1561|mKIAA1039	RAP1 GTPase activating protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-125872878-2	chr8	125872778	125872978	+	624.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175561, intron 8 of 33)	intron (NM_175561, intron 8 of 33)	-25036.0	NR_155422	102632990.0	Mm.429446	NR_155422		A730098A19Rik	-	RIKEN cDNA A730098A19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-64752987-4	chr14	64752852	64753052	+	836.56665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081177, intron 21 of 39)	intron (NM_001081177, intron 21 of 39)	100421.0	NM_001081177	16554.0	Mm.23611	NM_001081177	ENSMUSG00000060012	Kif13b	5330429L19Rik|6030414C01|AI429803|C130021D12Rik|GAKIN	kinesin family member 13B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-57284920-2	chr16	57284820	57285020	+	690.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027651, intron 2 of 7)	L1_Mus3|LINE|L1	7931.0	NM_027651	71027.0	Mm.158563	NM_027651	ENSMUSG00000022753	Tmem30c	4933401B01Rik|4933409A18Rik|Cdc50c	transmembrane protein 30C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-148406491-3	chr2	148406409	148406609	+	761.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009378, exon 1 of 1)	exon (NM_009378, exon 1 of 1)	1679.0	NM_009378	21824.0	Mm.24096	NM_009378	ENSMUSG00000074743	Thbd	AI385582|CD141|TM	thrombomodulin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-127302031-2	chr2	127301931	127302131	+	772.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31802.0	NM_139308	99138.0	Mm.41271	NM_139308	ENSMUSG00000027367	Stard7	AI852671|AL022671|AW544915	START domain containing 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-14684940-4	chr14	14684837	14685037	+	986.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18088.0	NM_001360505	218756.0	Mm.258893	NM_001033270	ENSMUSG00000021733	Slc4a7	E430014N10Rik|NBC3|NBCn1|NBCn1-G|Tg(Thy1-SNCA)12Mjff	solute carrier family 4, sodium bicarbonate cotransporter, member 7	protein-coding	1.24128497718565	2.54327738727933	1.94655525183179	1.72495423564872	2.28016071411284	2.1873295944484	2.66392470410711	2.66187009489431	1.22507125328723	0.190654833035974	0.669546561020494
Merged-chr1-180066365-2	chr1	180066265	180066465	+	569.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153194, intron 7 of 35)	intron (NR_153194, intron 7 of 35)	105276.0	NM_001033285	226751.0	Mm.259655	NM_001033285	ENSMUSG00000026490	Cdc42bpa	A930014J19Rik|DMPK-like	CDC42 binding protein kinase alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-17694993-2	chr12	17694893	17695093	+	685.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016677, intron 1 of 3)	ID4|SINE|ID	4184.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128747689-4	chr2	128747607	128747807	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 4 of 18)	intron (NM_008587, intron 4 of 18)	48792.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	2.28251794437926	2.7191059940826	3.32601169584064	3.07711070765736	3.5159791573276	2.58886921521206	3.42451446393627	2.56410247592426	0.352802100840146	0.608694439374638	0.974576632476413
Merged-chr17-71479094-2	chr17	71479011	71479211	+	709.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-3768.0	NM_028887	74355.0	Mm.194450	NM_028887	ENSMUSG00000024054	Smchd1	4931400A14Rik|AW554188|MommeD1|mKIAA0650	SMC hinge domain containing 1	protein-coding	0.204988925680958	-0.289049767521195	-0.294352543149928	0.631031628452092	-0.304301661247309	-0.287858261662484	-0.293180574289812	-0.297743773753491	-3.86145058553278	0.120520587751093	1
Merged-chr5-78311494-2	chr5	78311394	78311594	+	856.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3_Mus|LINE|L1	846006.0	NR_131050	69370.0	Mm.426881	NR_131050	ENSMUSG00000107232	1700017L05Rik	-	RIKEN cDNA 1700017L05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19076077-4	chr7	19075959	19076159	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010058)	promoter-TSS (NM_010058)	-141.0	NM_010058	13401.0	Mm.2852	NM_010058	ENSMUSG00000030410	Dmwd	DMR-N9|Dm9	dystrophia myotonica-containing WD repeat motif	protein-coding	5.99438113587991	5.34475597745773	5.93480129290706	5.18768810083443	5.47680009178117	5.19324938875284	4.39286461183826	4.31746354321318	-0.834171531052124	0.0174983706306106	0.162412674697833
Merged-chr17-40716462-3	chr17	40716382	40716582	+	989.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	-10638.0	NM_001038500	619517.0	Mm.391018	NM_001038500	ENSMUSG00000073396	Esp1	EG619517|Gm6084	exocrine gland secreted peptide 1	protein-coding	2.41064751939802	3.4109412450647	3.61283403213449	3.27261456242366	2.65000409810464	1.51644837531237	1.46398580933477	3.06723492068722	-1.5597071677265	0.0617262806439407	0.369062056871318
Merged-chr4-53081002-2	chr4	53080902	53081102	+	682.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 16 of 49)	intron (NM_013454, intron 16 of 49)	69122.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-12741283-4	chr18	12741177	12741377	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181731)	promoter-TSS (NM_181731)	-78.0	NM_181731	71132.0	Mm.179740	NM_027687	ENSMUSG00000024430	Cabyr	1700016C01Rik|4933421A18Rik|CBP86|FSP-2	calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-61688477-4	chr3	61688375	61688575	+	943.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	323968.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-122739312-3	chr2	122739211	122739411	+	644.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019788, intron 1 of 4)	intron (NM_019788, intron 1 of 4)	806.0	NM_019788	18457.0	Mm.268921	NM_019788	ENSMUSG00000005804	Bloc1s6	BLOC-1|Pldn|Stx13bp1|pa	biogenesis of lysosomal organelles complex-1, subunit 6, pallidin	protein-coding	1.47331362936356	2.30228242423523	1.39316580826567	2.24511317227225	2.22254216933482	1.64597058810373	1.90101556640333	1.36747205738231	-0.267686171218599	0.7971751847439	0.998431161219273
Merged-chr15-12204961-4	chr15	12204852	12205052	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172958)	promoter-TSS (NM_172958)	-76.0	NM_001356498	268783.0	Mm.54460	NM_172958	ENSMUSG00000039458	Mtmr12	3Pap|4932703C11|C730015A02Rik|Pip3ap|mKIAA1682	myotubularin related protein 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-6499054-3	chr1	6498968	6499168	+	763.366699	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001244693, intron 2 of 22)	L1MA9|LINE|L1	11837.0	NM_001244692	240690.0	Mm.234612	NM_173868	ENSMUSG00000033740	St18	AV348974|Myt3|NZF-3|Nzf3|mKIAA0535	suppression of tumorigenicity 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-71757078-1	chr9	71756978	71757178	+	656.5	f0_balb.idr	intron (NM_026599, intron 1 of 18)	intron (NM_026599, intron 1 of 18)	14524.0	NM_026599	68178.0	Mm.99961	NM_026599	ENSMUSG00000032232	Cgnl1	4933421H10Rik|9930020M10Rik|AI503810|Jacop	cingulin-like 1	protein-coding	-1.50874880059862	-1.47511716453926	-1.4852876488768	-1.49364198752927	-1.50638792193216	-0.992828729615453	-1.48298527415345	-1.4921465649048	2.3185461113984	0.50391666537493	1
Merged-chr11-97362867-5	chr11	97362793	97362993	+	862.7333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_138657, exon 1 of 10)	exon (NM_138657, exon 1 of 10)	342.0	NM_138657	192157.0	Mm.34339	NM_138657	ENSMUSG00000038485	Socs7	2310063P06Rik|C85125|Nap4	suppressor of cytokine signaling 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84705520-2	chr8	84705420	84705620	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_008535)	TTS (NM_008535)	4063.0	NM_008535	17095.0	Mm.4925	NM_008535	ENSMUSG00000034041	Lyl1	Lyl-1|bHLHa18	lymphoblastomic leukemia 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-18028468-1	chr13	18028368	18028568	+	559.0	f1_balb.idr	Intergenic	Intergenic	-35117.0	NM_025904	67008.0	Mm.252918	NM_025904	ENSMUSG00000075054	Yae1d1	1600012F09Rik	Yae1 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-107168867-4	chr13	107168781	107168981	+	978.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	146311.0	NR_015471	100040322.0	Mm.133867	NR_015471	ENSMUSG00000071181	3830408C21Rik	-	RIKEN cDNA 3830408C21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118476890-4	chr11	118476802	118477002	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359368)	promoter-TSS (NM_001359368)	70.0	NM_001359368	217364.0	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-20064443-1	chr1	20064343	20064543	+	1000.0	f0_balb.idr	intron (NM_153179, intron 66 of 66)	intron (NM_153179, intron 66 of 66)	-292011.0	NR_045734	75028.0	Mm.417820	NR_045734	ENSMUSG00000089914	4930486I03Rik	-	RIKEN cDNA 4930486I03 gene	ncRNA	0.463594651043341	0.760544948317541	1.08116419705152	1.73505109502666	0.466533749842528	1.64700547539222	0.497610780549441	0.485038766822126	-0.73702993839151	0.661059606206006	0.990861719256097
Merged-chr9-109908345-3	chr9	109908261	109908461	+	661.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18718.0	NR_106057	102465660.0		NR_106057	ENSMUSG00000098490	Mir7089	Gm27418|mmu-mir-7089	microRNA 7089	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-105558787-4	chr5	105558692	105558892	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133897, intron 2 of 3)	intron (NM_133897, intron 2 of 3)	39321.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-94079304-4	chr1	94079214	94079414	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26761.0	NM_008798	18566.0	Mm.5024	NM_008798	ENSMUSG00000026285	Pdcd1	Ly101|PD-1|Pdc1	programmed cell death 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127077133-4	chr7	127077031	127077231	+	924.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14305.0	NM_178901	101602.0	Mm.490357	NM_178901	ENSMUSG00000045165	AI467606	-	expressed sequence AI467606	protein-coding	0.296562806078402	-0.21120502422678	0.0872209886908256	-0.218168017849968	-0.0880253289700041	-0.210314147739873	0.0941027387236885	-0.217640639326501	-1.03879471401151	0.650761649775403	1
Merged-chr2-30966568-2	chr2	30966468	30966668	+	768.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144884, intron 2 of 4)	intron (NM_144884, intron 2 of 4)	1350.0	NM_144884	30931.0	Mm.154994	NM_144884	ENSMUSG00000026849	Tor1a	DQ2|Dyt1|torsinA	torsin family 1, member A (torsin A)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-85401307-2	chr9	85401207	85401407	+	785.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74157.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-33214838-3	chr18	33214741	33214941	+	868.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133774)	promoter-TSS (NM_133774)	-979.0	NM_001347624	170459.0	Mm.127058	NM_133774	ENSMUSG00000024378	Stard4	4632419C16Rik|9030213J02Rik	StAR-related lipid transfer (START) domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-116177464-3	chr9	116177367	116177567	+	741.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2104.0	NM_029575	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-70297705-2	chr16	70297545	70297745	+	800.5	f0_c57.idr|f1_c57bl6.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-16304.0	NM_028803	74185.0	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	0.181899016577912	0.688281467447218	0.194467462468485	0.611579995732954	0.183066615915734	0.697870925550627	0.195817202736382	0.617509617649954	0.0344839350810152	0.986179003369437	1
Merged-chr10-22353065-2	chr10	22352963	22353163	+	574.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009018, intron 6 of 6)	MLTR14|LTR|ERV1	-8831.0	NM_020030	56554.0	Mm.458004	NM_020030	ENSMUSG00000078452	Raet1d	RAE-1delta	retinoic acid early transcript delta	protein-coding	0.227847047710014	0.254164525215475	0.245642176016342	0.239002263261164	1.04147304168751	0.813053736061927	1.10413714185338	0.240166437906708	4.45273912948857	0.0227783296732593	1
Merged-chr17-15804581-4	chr17	15804417	15804617	+	966.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22069.0	NM_178615	68799.0	Mm.293466	NM_178615	ENSMUSG00000048027	Rgmb	1110059F19Rik|DRAGON	repulsive guidance molecule family member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-55155618-1	chr12	55155518	55155718	+	801.0	f1_balb.idr	intron (NM_001100109, intron 1 of 15)	CpG	514.0	NM_001100109	665155.0	Mm.12848	NM_001100109	ENSMUSG00000112449	Srp54b	-	signal recognition particle 54B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-125624196-1	chr7	125624096	125624296	+	557.0	f1_balb.idr	intron (NM_021887, intron 2 of 8)	intron (NM_021887, intron 2 of 8)	20767.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	-1.17367364971587	-1.14665061133654	-1.15856004380685	-1.16834280623128	-1.17310571790619	-1.14406978763884	-0.42938571406771	-1.16659169643457	2.89727187181404	0.396361616615464	1
Merged-chr2-18676719-4	chr2	18676646	18676846	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007552)	promoter-TSS (NM_007552)	-272.0	NM_007552	12151.0	Mm.289584	NM_007552	ENSMUSG00000026739	Bmi1	AW546694|Bmi-1|Pcgf4	Bmi1 polycomb ring finger oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-44135825-4	chr19	44135723	44135923	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356578)	promoter-TSS (NM_001356578)	53.0	NM_001081077	72502.0	Mm.276109	NM_001081077	ENSMUSG00000025200	Cwf19l1	-	CWF19-like 1, cell cycle control (S. pombe)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-90964929-4	chr5	90964808	90965008	+	880.974976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026788, intron 5 of 7)	intron (NM_026788, intron 5 of 7)	33712.0	NM_026788	665563.0	Mm.153030	NM_026788	ENSMUSG00000029376	Mthfd2l	1110019K23Rik|C630010D07Rik	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-19570389-4	chr10	19570310	19570510	+	973.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21539.0	NM_010511	15979.0	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	5.45989114583579	4.04785525279113	5.84842221594009	4.59797956802079	5.51737587432598	5.2485599406155	4.97790100524126	4.9904240810717	0.0411136509096335	0.915289155610744	0.998431161219273
Merged-chr2-160267520-3	chr2	160267426	160267626	+	878.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1|SINE|Alu	59968.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-80955964-2	chr13	80955864	80956064	+	574.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-8110.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-111992270-4	chr8	111992167	111992367	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357186)	promoter-TSS (NM_001357186)	35.0	NM_001357184	30947.0	Mm.282162	NM_013925	ENSMUSG00000031949	Adat1	MMADAT1	adenosine deaminase, tRNA-specific 1	protein-coding	6.15887316059891	7.12153500907458	6.60527406450539	6.18148816840023	6.22600327346309	5.9804088811667	6.16196805812746	5.05835837709355	-0.69568984041694	0.0149586878911851	0.145041605862471
Merged-chr9-110636130-2	chr9	110636030	110636230	+	792.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_106186)	promoter-TSS (NR_106186)	-15.0	NR_106186	102466885.0		NR_106186	ENSMUSG00000099275	Mir8107	Gm27455|mmu-mir-8107	microRNA 8107	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-139121164-2	chr4	139121064	139121264	+	768.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163006, intron 1 of 3)	intron (NM_001163006, intron 1 of 3)	9873.0	NR_033745	433771.0	Mm.305990	NM_001163006	ENSMUSG00000050608	Minos1	2310028O11Rik	mitochondrial inner membrane organizing system 1	protein-coding	1.60449305125848	1.15138813065129	2.2372099723215	2.16991007501027	1.28803467445458	2.52917287152974	1.38030412916184	2.18185822269507	0.238615542467316	0.827589617936124	0.998431161219273
Merged-chr17-34883533-4	chr17	34883432	34883632	+	997.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-1432.0	NM_013484	12263.0	Mm.283217	NM_013484	ENSMUSG00000024371	C2	-	complement component 2 (within H-2S)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55657032-2	chr19	55656932	55657132	+	619.166626	f1_balb.idr|f1_c57bl6.idr	intron (NR_045318, intron 2 of 3)	RLTR17B_Mm|LTR|ERVK	45172.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27961939-1	chr17	27961839	27962039	+	588.0	f0_balb.idr	intron (NM_181413, intron 1 of 24)	intron (NM_181413, intron 1 of 24)	52633.0	NM_181413	224650.0	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99421943-3	chr15	99421905	99422105	+	685.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001001884)	TTS (NM_001001884)	28786.0	NM_001171035	110213.0	Mm.16769	NM_026669	ENSMUSG00000023010	Tmbim6	5031406P05Rik|Bi1|Tegt	transmembrane BAX inhibitor motif containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-149650543-6	chr4	149650339	149650539	+	911.611084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001164052, exon 22 of 22)	3' UTR (NM_001164052, exon 22 of 22)	5128.0	NR_105990	102465983.0		NR_105990	ENSMUSG00000098580	Mir7023	Gm27912|mmu-mir-7023	microRNA 7023	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-138134421-3	chr1	138134312	138134512	+	854.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001268286, intron 2 of 28)	intron (NM_001268286, intron 2 of 28)	40714.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-133087782-3	chr1	133087694	133087894	+	831.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001099276, intron 15 of 32)	intron (NM_001099276, intron 15 of 32)	41782.0	NM_001099276	240752.0	Mm.387308	NM_001099276	ENSMUSG00000026447	Pik3c2b	C330011J12Rik|Gm199|PI3K-C2beta|PI3KC2beta	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-108389379-4	chr3	108389268	108389468	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5530.0	NM_019976	56742.0	Mm.389499	NM_019976	ENSMUSG00000068744	Psrc1	5430413I02Rik|AL033312|Dda3	proline/serine-rich coiled-coil 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105637983-3	chr8	105637867	105638067	+	624.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_151743)	promoter-TSS (NR_151743)	-493.0	NR_151742	546100.0	Mm.471801	NR_151742	ENSMUSG00000098120	Gm5914	-	predicted gene 5914	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-147188628-1	chr5	147188528	147188728	+	663.0	f1_c57bl6.idr	promoter-TSS (NM_008178)	promoter-TSS (NM_008178)	-68.0	NM_008178	14842.0	Mm.4797	NM_008178	ENSMUSG00000053129	Gsx1	Gsh-1|Gsh1	GS homeobox 1	protein-coding	0.158650751271339	0.595320719739643	0.177024837325179	1.30627131108362	0.822212640030339	0.187749038114315	0.178968037487425	0.171381646881722	-1.48601576636112	0.464814728027901	1
Merged-chr7-145256113-1	chr7	145256013	145256213	+	722.5	f1_c57bl6.idr	intron (NR_132644, intron 22 of 24)	intron (NR_132644, intron 22 of 24)	27898.0	NR_132644	233979.0	Mm.102235	NM_146206	ENSMUSG00000048677	Tpcn2	D830047E22Rik|Gm35086	two pore segment channel 2	protein-coding	0.826509187037706	0.341966909847893	0.336827530645757	0.892993330598916	0.568031719984808	0.666669827759484	0.337956597245912	0.479641007011258	-0.814896996365457	0.652052518079773	1
Merged-chr9-21453717-2	chr9	21453617	21453817	+	704.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357721, intron 1 of 19)	B2_Mm2|SINE|B2	28809.0	NM_001357719	13430.0	Mm.433257	NM_007871	ENSMUSG00000033335	Dnm2	Dyn2|Udnm|b2b2159Clo	dynamin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-21545484-4	chr5	21545389	21545589	+	883.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199632, intron 11 of 20)	intron (NM_001199632, intron 11 of 20)	1962.0	NM_028977	74511.0	Mm.439963	NM_028977	ENSMUSG00000039883	Lrrc17	37kDa|4833425M04Rik|6130400C22Rik|P37nb	leucine rich repeat containing 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-172590608-4	chr1	172590505	172590705	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029084)	promoter-TSS (NM_029084)	-37.0	NM_029084	74748.0	Mm.179812	NM_029084	ENSMUSG00000053318	Slamf8	5830408F06Rik|Blame|SBBI42	SLAM family member 8	protein-coding	2.11070943445249	0.866180037295951	1.58424712224495	0.831465271207112	1.56934972265194	0.870460898159085	2.11802670014693	1.06066575859257	0.0901000264680239	0.948001430681039	0.998431161219273
Merged-chr7-125638980-4	chr7	125638884	125639084	+	960.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35555.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	3.05203184101107	1.66452360080222	2.60521093668546	2.96729137003883	3.27370731843846	3.08047990610961	3.16619990104894	3.30034726375967	0.928029122106247	0.184170472344962	0.659736463135405
Merged-chr5-122500206-2	chr5	122500106	122500306	+	636.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110140, intron 3 of 19)	intron (NM_001110140, intron 3 of 19)	2019.0	NM_001110140	11938.0	Mm.227583	NM_009722	ENSMUSG00000029467	Atp2a2	9530097L16Rik|D5Wsu150e|SERCA2|SERCA2B|Serca2a|mKIAA4195	ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-51705755-4	chr12	51705651	51705851	+	692.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001329698, intron 1 of 5)	intron (NM_001329698, intron 1 of 5)	-13837.0	NM_052973	94186.0	Mm.65979	NM_052973	ENSMUSG00000020954	Strn3	Gs2na|SG2NA	striatin, calmodulin binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46486881-4	chr19	46486790	46486990	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_015752, exon 12 of 12)	3' UTR (NM_015752, exon 12 of 12)	-14758.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-86228940-4	chr1	86228862	86229062	+	989.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027456, intron 19 of 20)	intron (NM_027456, intron 19 of 20)	74182.0	NM_001310702	78795.0	Mm.379264	NM_027456	ENSMUSG00000062590	Armc9	3830422A13Rik|4831423D23Rik|4930438O05Rik|5730415N24Rik	armadillo repeat containing 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-17797196-2	chr16	17797096	17797296	+	724.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153790)	promoter-TSS (NM_153790)	-86.0	NM_153790	224024.0	Mm.194950	NM_153790	ENSMUSG00000012017	Scarf2	NSR1|SREC-II|SRECRP-1|Scatf1|Srec2|SrecII	scavenger receptor class F, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-89092902-4	chr11	89092793	89092993	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001033266, exon 4 of 4)	3' UTR (NM_001033266, exon 4 of 4)	19052.0	NM_001033266	217071.0	Mm.342127	NM_001033266	ENSMUSG00000072553	Gm525	-	predicted gene 525	protein-coding	5.19841736901123	4.84576621545189	5.65337770349039	5.89711162401611	6.07536461988582	5.65826991319895	5.37342362616807	6.51065359233815	0.579660910200702	0.0668797486118561	0.387979500964769
Merged-chr12-85345712-4	chr12	85345609	85345809	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026775, intron 3 of 4)	intron (NM_026775, intron 3 of 4)	-6347.0	NM_145138	217718.0	Mm.29071	NM_145138	ENSMUSG00000034290	Nek9	C130021H08Rik	NIMA (never in mitosis gene a)-related expressed kinase 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-50939160-4	chr14	50939067	50939267	+	969.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR12B|LTR|ERVK	-5136.0	NM_013632	18950.0	Mm.17932	NM_013632	ENSMUSG00000115338	Pnp	AL024301|AU015798|Np|Np-1|Np-2|Pnp1	purine-nucleoside phosphorylase	protein-coding	3.45823943306807	3.34383721554358	1.91485559753372	3.57734693085204	3.74062634475042	2.00322120917107	3.16254620801079	3.39537351821012	0.00967646029691733	0.989298237322408	0.998431161219273
Merged-chr15-100726086-1	chr15	100725986	100726186	+	617.0	f1_balb.idr	intron (NM_172451, intron 1 of 11)	(TG)n|Simple_repeat|Simple_repeat	3290.0	NM_001161767	207839.0	Mm.22969	NM_172451	ENSMUSG00000037280	Galnt6	4632410F13|AW047994|GalNAc-T6	polypeptide N-acetylgalactosaminyltransferase 6	protein-coding	0.316420888395967	1.42472426378518	1.3505155597452	0.331495615291755	0.915923849431126	0.354209861968854	0.342893749502737	0.333057931583566	-2.17506119936375	0.251811155838495	0.749698831323701
Merged-chr11-90418158-3	chr11	90418057	90418257	+	714.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-27240.0	NM_172563	217082.0	Mm.158903	NM_172563	ENSMUSG00000003949	Hlf	E230015K02Rik	hepatic leukemia factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-43474725-4	chr1	43474622	43474822	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010879, intron 1 of 4)	intron (NM_010879, intron 1 of 4)	28971.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-54934066-4	chr6	54933972	54934172	+	987.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001171007, intron 8 of 11)	intron (NM_001171007, intron 8 of 11)	37589.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101093388-4	chr7	101093271	101093471	+	965.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15404.0	NM_001146010	207278.0	Mm.263041	NM_199012	ENSMUSG00000030691	Fchsd2	BC034086|R74866|Sh3md3|mKIAA0769	FCH and double SH3 domains 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-134456080-3	chr5	134455978	134456178	+	705.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081462, intron 1 of 29)	intron (NM_001081462, intron 1 of 29)	184.0	NM_001081465	57080.0	Mm.332735	NM_020331	ENSMUSG00000023079	Gtf2ird1	1700012P16Rik|BEN|Cream1|ESTM9|GTF3|Gtf2il|MusTRD1|Tg(Alb1-Myc)166.8Sst|WBSCR11|X83320	general transcription factor II I repeat domain-containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-87254035-1	chr17	87253935	87254135	+	580.0	f1_balb.idr	TTS (NM_139295)	TTS (NM_139295)	11912.0	NM_176808	193813.0	Mm.30251	NM_139295	ENSMUSG00000024150	Mcfd2	1810021C21Rik|F5f8d|Lman1ip|Sdnsf	multiple coagulation factor deficiency 2	protein-coding	-0.947981310248532	-1.06986221617136	-1.08111523493323	-1.08767915324048	-0.521931119253548	-1.06742364006257	-1.07856779814469	-1.08733643431101	1.79154211409157	0.579573222034837	1
Merged-chr15-59046947-3	chr15	59046832	59047032	+	692.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144800, intron 3 of 14)	intron (NM_144800, intron 3 of 14)	35094.0	NM_001146180	211401.0	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-81310676-1	chr7	81310576	81310776	+	544.0	f1_balb.idr	intron (NM_008803, intron 11 of 21)	intron (NM_008803, intron 11 of 21)	34558.0	NM_009092	20068.0	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-37889043-2	chr13	37888943	37889143	+	700.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039188, intron 2 of 9)	intron (NM_001039188, intron 2 of 9)	172.0	NM_001177869	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-30626412-5	chr14	30626284	30626484	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011103)	promoter-TSS (NM_011103)	-176.0	NM_011103	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-75791973-3	chr2	75791812	75792012	+	883.361084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40265.0	NM_172666	228061.0	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-127789984-2	chr2	127789827	127790027	+	914.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10B|LTR|ERVL	-1036.0	NM_001355429	53885.0	Mm.210766	NM_016902	ENSMUSG00000027378	Nphp1	-	nephronophthisis 1 (juvenile) homolog (human)	protein-coding	1.62884632723071	0.848031920289244	0.834270902575861	1.43638377430323	1.46947550968512	1.55393382975439	0.83732591854309	1.55342236929057	0.528382311284613	0.70783293761568	0.998431161219273
Merged-chr13-97206850-2	chr13	97206735	97206935	+	577.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-8478.0	NM_010422	15212.0	Mm.27816	NM_010422	ENSMUSG00000021665	Hexb	-	hexosaminidase B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-109120926-4	chr4	109120827	109121027	+	960.283325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355190, intron 2 of 21)	L1MC1|LINE|L1	-2891.0	NM_001134791	100273.0	Mm.366315	NM_133885	ENSMUSG00000028559	Osbpl9	2600011I06Rik|AU015843|Orp-9	oxysterol binding protein-like 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-12705707-2	chr10	12705607	12705807	+	872.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011682, intron 22 of 73)	intron (NM_011682, intron 22 of 73)	156028.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-166171403-4	chr1	166171319	166171519	+	851.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41198.0	NM_001360925	59290.0	Mm.46357	NM_021610	ENSMUSG00000000544	Gpa33	2010310L10Rik|2210401D16Rik|BB116197|mA33	glycoprotein A33 (transmembrane)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-127832724-4	chr2	127832621	127832821	+	764.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113179)	promoter-TSS (NM_001113179)	-862.0	NM_009772	12235.0	Mm.2185	NM_009772	ENSMUSG00000027379	Bub1	AL022991|Bub1a|C80208|D2Xrf87	BUB1, mitotic checkpoint serine/threonine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-127775610-2	chr1	127775510	127775710	+	656.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028399, intron 2 of 8)	intron (NM_028399, intron 2 of 8)	1446.0	NM_028399	72949.0	Mm.268672	NM_028399	ENSMUSG00000026349	Ccnt2	2900041I18Rik|C81304|CycT2|CycT2a|CycT2b	cyclin T2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-87077986-4	chr15	87077872	87078072	+	840.974976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-466327.0	NM_001252310	106014.0	Mm.244319	NM_134096	ENSMUSG00000054863	Fam19a5	TAFA5|Tafa-5|Tara-5	family with sequence similarity 19, member A5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-70971173-1	chr17	70971073	70971273	+	979.0	f1_c57bl6.idr	Intergenic	MER34|LTR|ERV1	19343.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	2.13902196601911	0.774438715555397	0.747176787826972	2.90329572705563	1.31862569352033	0.78040087459541	0.753308477490466	1.56528199126067	-2.21293308291347	0.323640760910379	0.826332612263711
Merged-chr2-59336154-2	chr2	59336054	59336254	+	717.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 12 of 20)	RMER6A|LTR|ERVK	50528.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115332713-2	chr5	115332613	115332813	+	578.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_029645)	TTS (NM_029645)	5536.0	NR_036616	108014.0	Mm.287826	NM_025573	ENSMUSG00000029538	Srsf9	25kDa|2610029M16Rik|SRp30c|Sfrs9	serine/arginine-rich splicing factor 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-11513701-4	chr19	11513605	11513805	+	965.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4854.0	NM_027209	69774.0	Mm.436639	NM_027209	ENSMUSG00000024677	Ms4a6b	1810027D10Rik	membrane-spanning 4-domains, subfamily A, member 6B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-87914648-3	chr6	87914532	87914732	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_173737, exon 2 of 7)	exon (NM_173737, exon 2 of 7)	656.0	NM_173737	232210.0	Mm.246241	NM_173737	ENSMUSG00000030060	Hmces	8430410A17Rik|C85376	5-hydroxymethylcytosine (hmC) binding, ES cell specific	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-8847430-2	chr10	8847330	8847530	+	555.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 2 of 19)	intron (NM_175155, intron 2 of 19)	38640.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-99231650-2	chr5	99231550	99231750	+	896.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_181318, intron 8 of 13)	intron (NM_181318, intron 8 of 13)	21277.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97148887-2	chr11	97148787	97148987	+	944.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_198100, intron 2 of 8)	intron (NM_198100, intron 2 of 8)	825.0	NM_198100	73174.0	Mm.27882	NM_198100	ENSMUSG00000038517	Tbkbp1	3110043L15Rik|ProSAPiP2|SINTBAD	TBK1 binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-67434482-4	chr15	67434403	67434603	+	852.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	207734.0	NR_045140	69334.0	Mm.63770	NR_045140	ENSMUSG00000102069	1700012I11Rik	-	RIKEN cDNA 1700012I11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129678065-3	chr4	129677948	129678148	+	780.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356378, intron 9 of 9)	intron (NM_001356378, intron 9 of 9)	-5281.0	NM_008468	16650.0	Mm.202358	NM_008468	ENSMUSG00000003731	Kpna6	IPOA7|Kpna5|NPI-2	karyopherin (importin) alpha 6	protein-coding	0.626917309822669	1.12424285183068	0.660437199370271	1.19511955099529	0.826861340922443	1.13423909204299	1.0891685831184	2.15479123274061	1.89362688758533	0.18072976379606	0.653393643840435
Merged-chr17-84958562-4	chr17	84958438	84958638	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027930)	promoter-TSS (NR_027930)	537.0	NM_001159496	19043.0	Mm.249695	NM_011151	ENSMUSG00000061130	Ppm1b	PP2CB	protein phosphatase 1B, magnesium dependent, beta isoform	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-11690504-2	chr2	11690404	11690604	+	962.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008367, exon 8 of 8)	3' UTR (NM_008367, exon 8 of 8)	-14789.0	NM_001271498	16169.0	Mm.200196	NM_008358	ENSMUSG00000023206	Il15ra	AA690181|IL-15RA	interleukin 15 receptor, alpha chain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-29987480-1	chr6	29987380	29987580	+	565.0	f1_c57bl6.idr	intron (NR_040264, intron 1 of 1)	ORR1D2|LTR|ERVL-MaLR	2151.0	NR_040263	76419.0	Mm.84522	NR_040263	ENSMUSG00000045709	Smkr-ps	1700023L04Rik	smal lysine rich protein 1, pseudogene	ncRNA	0.507838184738109	0.993326417205801	0.831287505215442	0.239333292976925	0.629196559300099	0.253341406722883	0.246306567813752	0.240282380801072	-2.151656016914	0.269774732954268	1
Merged-chr16-10878802-2	chr16	10878702	10878902	+	647.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35995.0	NR_131135	545180.0	Mm.373756	NR_131135	ENSMUSG00000095369	Gm21859	-	predicted gene, 21859	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-39006107-2	chr15	39006007	39006207	+	792.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162494)	promoter-TSS (NM_001162494)	-173.0	NM_001162494	14368.0	Mm.4769	NM_008056	ENSMUSG00000022297	Fzd6	Fz6	frizzled class receptor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24455389-4	chr17	24455336	24455536	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007893)	promoter-TSS (NM_007893)	-44.0	NR_125990	13560.0	Mm.163132	NM_007893	ENSMUSG00000024137	E4f1	p120E4F|phi-AP3	E4F transcription factor 1	protein-coding	7.3075725568236	7.40537691929027	7.1726512360335	7.56266379260487	7.40027454988676	7.75993136376819	7.26947832047723	7.87573243947315	0.236757872992124	0.163150852508392	0.625660748475075
Merged-chr14-30613554-4	chr14	30613449	30613649	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011103, intron 1 of 17)	intron (NM_011103, intron 1 of 17)	-3239.0	NM_001310682	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	4.12493895474914	3.70666619528091	4.99526661381894	4.58893335168336	5.08090592607243	4.7990163972453	5.23228393783828	5.2135262002396	0.797925544701242	0.0332411144028666	0.255439938474974
Merged-chr8-71461922-1	chr8	71461822	71462022	+	693.0	f1_c57bl6.idr	exon (NM_022419, exon 2 of 5)	exon (NM_022419, exon 2 of 5)	1735.0	NM_022419	64296.0	Mm.276383	NM_022419	ENSMUSG00000007950	Abhd8	0910001L24Rik|AB030191	abhydrolase domain containing 8	protein-coding	-0.953721354153451	-1.41025554057125	-1.42001056191158	-1.42802362688808	-1.44024889148474	-1.40814158675276	-1.41780223890411	-1.42658929208844	-2.11310844444413	0.543369238581748	1
Merged-chr9-118653079-6	chr9	118652910	118653110	+	771.777771	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 5 of 27)	intron (NM_133721, intron 5 of 27)	46301.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106271966-2	chr11	106271866	106272066	+	555.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001130187, intron 1 of 12)	intron (NM_001130187, intron 1 of 12)	1006.0	NM_001130187	83796.0	Mm.21772	NM_031878	ENSMUSG00000078619	Smarcd2	AW322457|Baf60b	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-92442126-2	chr16	92442026	92442226	+	681.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081549, intron 1 of 3)	intron (NM_001081549, intron 1 of 3)	24043.0	NM_001081549	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-76473609-1	chr14	76473509	76473709	+	569.0	f0_balb.idr	intron (NM_207652, intron 1 of 2)	intron (NM_207652, intron 1 of 2)	-14827.0	NM_001177751	21807.0	Mm.153272	NM_009366	ENSMUSG00000022010	Tsc22d1	AA589566|AW105905|Egr5|TSC-22|Tgfb1i4|Tsc|Tsc22	TSC22 domain family, member 1	protein-coding	2.39462450451371	2.41583114563642	3.29060182545663	2.52568391858	3.33942565370157	2.43379558364059	1.78667458385267	2.6495296640557	-0.0526831614326581	0.94729305568842	0.998431161219273
Merged-chr17-34132824-2	chr17	34132724	34132924	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360530, intron 1 of 5)	B1_Mm|SINE|Alu	7306.0	NM_001360530	14998.0	Mm.16373	NM_010386	ENSMUSG00000037649	H2-DMa	H-2Ma|H2-Ma	histocompatibility 2, class II, locus DMa	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-44121470-2	chr19	44121370	44121570	+	556.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081077, intron 9 of 13)	MIR3|SINE|MIR	13986.0	NM_001356578	72502.0	Mm.276109	NM_001081077	ENSMUSG00000025200	Cwf19l1	-	CWF19-like 1, cell cycle control (S. pombe)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-21091429-4	chr5	21091343	21091543	+	822.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35532.0	NM_011203	19248.0	Mm.319117	NM_011203	ENSMUSG00000028771	Ptpn12	P19-PTP|PTP-P19|PTP-PEST|PTPG1	protein tyrosine phosphatase, non-receptor type 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-48750581-4	chr7	48750473	48750673	+	961.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38430.0	NM_028031	243983.0	Mm.279116	NM_028031	ENSMUSG00000030471	Zdhhc13	2410004E01Rik|C530010M18|HIP3RP|Hip14l|kojak|skc4	zinc finger, DHHC domain containing 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30658604-4	chr2	30658509	30658709	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_136917, exon 4 of 4)	non-coding (NR_136917, exon 4 of 4)	19402.0	NR_136917	665635.0	Mm.450149	NR_136917		Gm14486	-	predicted gene 14486	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-85285607-3	chr16	85285502	85285702	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-111895.0	NM_001198826	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	5.62529842907721	5.79243006939103	4.86338352361044	5.74100933437124	2.8923822691298	2.6680735660653	3.74547557105039	1.69725235896116	-3.39538943401983	3.50273001962655e-12	1.04475580814067e-09
Merged-chr9-85327820-4	chr9	85327721	85327921	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001160378)	promoter-TSS (NM_001160378)	-671.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	5.43196657575756	5.89948745967815	5.7371323666577	5.53097637462839	4.78615310963557	5.55132107467798	5.90943619268119	5.36754367910054	-0.232263368292566	0.43388036378647	0.906073904277687
Merged-chr2-28193260-2	chr2	28193160	28193360	+	607.5	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001038614, exon 1 of 4)	5' UTR (NM_001038614, exon 1 of 4)	167.0	NM_001038614	56177.0	Mm.43278	NM_019498	ENSMUSG00000026833	Olfm1	AMY|AW742568|Noe1|OlfA|Pancortin|Pancortin3	olfactomedin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-184616127-4	chr1	184616031	184616231	+	998.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58440.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-53315735-2	chr19	53315635	53315835	+	822.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360348, intron 1 of 5)	MIRc|SINE|MIR	4290.0	NM_001360348	17859.0	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119491432-4	chr11	119491343	119491543	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_153849)	promoter-TSS (NR_153849)	96.0	NM_001164636	338371.0	Mm.271946	NM_177394	ENSMUSG00000039850	Endov	A730011L01Rik	endonuclease V	protein-coding	4.15802244307835	3.41147650073496	3.55952378955251	2.99447045442542	3.235241598407	3.33199533640434	3.50475169639377	3.75635085239885	-0.212670459470794	0.700110940413959	0.998431161219273
Merged-chr15-63500575-4	chr15	63500470	63500670	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20962.0	NR_045279	432958.0	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-130291658-4	chr2	130291543	130291743	+	976.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4296.0	NM_001110513	228598.0	Mm.32582	NM_152993	ENSMUSG00000053552	Ebf4	Ebf3|O/E-4|Olf-1	early B cell factor 4	protein-coding	4.23170410978167	3.60113873264671	3.03546176910513	3.77046958813311	3.90323849864649	3.52841734039909	3.50573044636296	4.67213654582184	0.372205462752801	0.483522988700561	0.931207887927275
Merged-chr5-147826924-2	chr5	147826824	147827024	+	567.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-33704.0	NM_025624	66537.0	Mm.332855	NM_025624	ENSMUSG00000029649	Pomp	2510048O06Rik|Ump1	proteasome maturation protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-116860552-4	chr3	116860452	116860652	+	875.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113478, intron 1 of 16)	intron (NM_001113478, intron 1 of 16)	985.0	NM_001113478	20321.0	Mm.66293	NM_009146	ENSMUSG00000033386	Frrs1	AI131732|Sdfr2	ferric-chelate reductase 1	protein-coding	2.95083869904409	1.86356157728156	2.61107596624162	1.54491103657582	2.42197959215062	1.87717586134567	1.59768222170695	3.00549807066894	-0.0488914649391299	0.958507793216754	0.998431161219273
Merged-chr8-22593889-4	chr8	22593803	22594003	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001198998)	promoter-TSS (NM_001198998)	-90.0	NM_011696	22335.0	Mm.227704	NM_011696	ENSMUSG00000008892	Vdac3	-	voltage-dependent anion channel 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-23048796-2	chr2	23048696	23048896	+	733.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B2|LTR|ERVK	-8555.0	NM_145994	11308.0	Mm.205647	NM_007380	ENSMUSG00000058835	Abi1	E3B1|NAP1|Ssh3bp1|abi-1	abl-interactor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-27988365-3	chr15	27988276	27988476	+	800.866638	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081302, intron 1 of 56)	MTC|LTR|ERVL-MaLR	37472.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-13300395-4	chr10	13300291	13300491	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195065, intron 1 of 12)	intron (NM_001195065, intron 1 of 12)	23898.0	NM_001195096	215789.0	Mm.283359	NM_001033257	ENSMUSG00000062866	Phactr2	AV158170|BC012871	phosphatase and actin regulator 2	protein-coding	5.67650503582329	5.02751331307239	5.91505320334763	4.94665248132406	5.85611745491294	5.14929809412703	5.54091185608987	6.08564276159221	0.283971130863895	0.366768074326006	0.861862339647405
Merged-chr18-75171443-4	chr18	75171342	75171542	+	939.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027727, intron 13 of 16)	intron (NM_027727, intron 13 of 16)	125875.0	NR_045394	100503117.0	Mm.250517	NR_045393	ENSMUSG00000102047	2010010A06Rik	5033420E22Rik	RIKEN cDNA 2010010A06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36597084-2	chr1	36596984	36597184	+	660.200012	f1_balb.idr|f1_c57bl6.idr	intron (NM_001126046, intron 10 of 14)	MTD|LTR|ERVL-MaLR	-3752.0	NM_027957	381337.0	Mm.17413	NM_027957	ENSMUSG00000046337	Fam178b	1700024G10Rik|Gm990	family with sequence similarity 178, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-8913326-4	chr4	8913207	8913407	+	965.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	161983.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-102298643-1	chr11	102298543	102298743	+	594.0	f1_balb.idr	Intergenic	B1_Mus1|SINE|Alu	-2014.0	NM_001098837	217218.0	Mm.390381	NM_001098836	ENSMUSG00000059995	Atxn7l3	E030022H21Rik	ataxin 7-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-47867783-2	chr8	47867683	47867883	+	621.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133791, intron 11 of 22)	B4A|SINE|B4	43301.0	NM_029383	75677.0	Mm.390033	NM_029383	ENSMUSG00000038064	Cldn22	2210404A22Rik|5330431C14Rik|9530051B05Rik	claudin 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-64277885-2	chr9	64277784	64277984	+	810.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-3701.0	NM_025372	66131.0	Mm.196219	NM_025372	ENSMUSG00000032397	Tipin	1110005A05Rik|1110018P21Rik	timeless interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97838913-4	chr11	97838855	97839055	+	765.854187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010688)	TTS (NM_010688)	-1825.0	NM_001080935	68127.0	Mm.110270	NM_001080935	ENSMUSG00000050538	B230217C12Rik	AI840637	RIKEN cDNA B230217C12 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-50784556-4	chr14	50784457	50784657	+	828.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360545, intron 1 of 8)	intron (NM_001360545, intron 1 of 8)	963.0	NM_177625	219022.0	Mm.276362	NM_177625	ENSMUSG00000006288	Ttc5	-	tetratricopeptide repeat domain 5	protein-coding	-1.18222045008182	-0.978438292940914	-1.16770109385923	-1.17699121268927	-1.18171183814936	-0.648785584566264	-1.16514082719289	-1.17532828586041	1.59252109794841	0.622914666369258	1
Merged-chr5-105564101-2	chr5	105564001	105564201	+	864.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133897, intron 2 of 3)	Lx8|LINE|L1	44630.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-71055692-4	chr2	71055594	71055794	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145524)	promoter-TSS (NM_145524)	-50.0	NM_001165982	75763.0	Mm.281668	NM_198005	ENSMUSG00000041966	Dcaf17	2810055O12Rik|4833418A01Rik|A030004A10Rik|A930009G19Rik|AI448937	DDB1 and CUL4 associated factor 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-173419742-3	chr1	173419631	173419831	+	860.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001013779)	promoter-TSS (NM_001013779)	-873.0	NM_001013779	383619.0	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-104061461-1	chr9	104061361	104061561	+	719.0	f0_balb.idr	intron (NM_025692, intron 1 of 11)	intron (NM_025692, intron 1 of 11)	1660.0	NM_025692	66663.0	Mm.224935	NM_025692	ENSMUSG00000032557	Uba5	5730525G14Rik|AW240750|Ube1dc1	ubiquitin-like modifier activating enzyme 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-27128705-4	chr8	27128611	27128811	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025686)	promoter-TSS (NM_025686)	-79.0	NM_025686	66653.0	Mm.334467	NM_025686	ENSMUSG00000031487	Brf2	2700059M06Rik|5730512K07Rik|AU018504|AU022602|BRFU|TFIIIB50	BRF2, RNA polymerase III transcription initiation factor 50kDa subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-155054874-4	chr1	155054831	155055031	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(G)n|Simple_repeat|Simple_repeat	28333.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128318949-2	chr10	128318849	128319049	+	951.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001252327, exon 24 of 26)	exon (NM_001252327, exon 24 of 26)	-3510.0	NM_019953	56530.0	Mm.44220	NM_019953	ENSMUSG00000025381	Cnpy2	5330432A10Rik|AW229003|D10Bwg1546e|Tmem4|Zsig9	canopy FGF signaling regulator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-23863320-2	chr19	23863220	23863420	+	556.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177034, intron 1 of 12)	intron (NM_177034, intron 1 of 12)	104444.0	NM_177034	319924.0	Mm.22879	NM_177034	ENSMUSG00000024897	Apba1	6430513E09Rik|Lin-10|Mint|Mint1|Urop11|X11|X11alpha	amyloid beta (A4) precursor protein binding, family A, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-84419916-2	chr17	84419816	84420016	+	818.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_183021, intron 21 of 37)	intron (NM_183021, intron 21 of 37)	46292.0	NM_183021	240174.0	Mm.246767	NM_177826	ENSMUSG00000024251	Thada	6530405K19|A930021O22|AU019899|BC052885|GITA	thyroid adenoma associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56462414-6	chr17	56462325	56462525	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252456)	promoter-TSS (NM_001252456)	-204.0	NM_001252456	19280.0	Mm.258771	NM_011218	ENSMUSG00000013236	Ptprs	AL022616|PTP|PTP-NU3|PTPNU-3|PTPsigma|Ptpt9|R-PTP-S|RPTPsigma	protein tyrosine phosphatase, receptor type, S	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-40868939-4	chr4	40868843	40869043	+	925.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	-14406.0	NM_022305	14595.0	Mm.15622	NM_022305	ENSMUSG00000028413	B4galt1	B-1,4-GalT|B-1,4-GalT1|GalT|Ggtb|Ggtb2|b4Gal-T1|beta-1,4-GalT|beta-1,4-GalT1|beta4Gal-T1	UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28667746-2	chr7	28667646	28667846	+	717.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25103.0	NM_207238	233040.0	Mm.116116	NM_207238	ENSMUSG00000037463	Fbxo27	E130008B10Rik|FBG5|Gm161	F-box protein 27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-74712214-4	chr1	74712128	74712328	+	835.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	-1307.0	NM_024264	104086.0	Mm.85083	NM_024264	ENSMUSG00000026170	Cyp27a1	1300013A03Rik|Cyp27	cytochrome P450, family 27, subfamily a, polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69627977-2	chr11	69627877	69628077	+	998.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-4994.0	NM_011814	23879.0	Mm.41930	NM_011814	ENSMUSG00000018765	Fxr2	Fxr2h	fragile X mental retardation, autosomal homolog 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-124959489-1	chr8	124959389	124959589	+	591.0	f0_balb.idr	Intergenic	Intergenic	-10235.0	NM_053207	112405.0	Mm.140619	NM_053207	ENSMUSG00000031987	Egln1	AI503754|C1orf12|HIF-PH2|HPH-2|Hif-p4h-2|ORF13|Phd2|SM-20	egl-9 family hypoxia-inducible factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119261855-1	chr11	119261755	119261955	+	557.0	f1_balb.idr	intron (NM_175430, intron 17 of 18)	intron (NM_175430, intron 17 of 18)	-6108.0	NM_001159324	14387.0	Mm.4793	NM_008064	ENSMUSG00000025579	Gaa	E430018M07Rik	glucosidase, alpha, acid	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-59810382-2	chr11	59810282	59810482	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271356)	promoter-TSS (NM_001271356)	302.0	NR_045686	100504104.0	Mm.391737	NR_045686	ENSMUSG00000087249	Gm16062	-	predicted gene 16062	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-103020463-4	chr3	103020356	103020556	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144901)	promoter-TSS (NM_144901)	-90.0	NM_001310693	229663.0	Mm.277713	NM_144901	ENSMUSG00000068823	Csde1	AA960392|BC016898|D3Jfr1|mKIAA0885|unr	cold shock domain containing E1, RNA binding	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96730029-3	chr3	96729932	96730132	+	835.277771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026406, intron 1 of 8)	intron (NM_026406, intron 1 of 8)	2421.0	NM_026406	67845.0	Mm.386792	NM_026406	ENSMUSG00000028098	Rnf115	2610028E05Rik|AU042696|Zfp364	ring finger protein 115	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-51400808-2	chr3	51400708	51400908	+	560.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4261.0	NM_026358	67749.0	Mm.273339	NM_026358	ENSMUSG00000037161	Mgarp	4930583H14Rik|AI195347|CESP-1|HUMMR|Osap|Qsap	mitochondria localized glutamic acid rich protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101645585-4	chr11	101645464	101645664	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17615.0	NM_025654	66599.0	Mm.41449	NM_025654	ENSMUSG00000010362	Rdm1	2410008M22Rik|AW212028|Rad52b	RAD52 motif 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152576682-2	chr1	152576582	152576782	+	582.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 3 of 17)	intron (NM_016846, intron 3 of 17)	48535.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118737348-3	chr9	118737257	118737457	+	882.711121	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 1 of 13)	intron (NM_001113514, intron 1 of 13)	25665.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134035755-4	chr6	134035720	134035920	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_007961, exon 1 of 8)	5' UTR (NM_007961, exon 1 of 8)	120.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	2.80471009387086	3.03568847370177	2.8179159034698	3.56110425175049	2.82807745217949	3.05782286695951	2.95712030365235	3.57818472866701	0.0766942173305894	0.903180255019899	0.998431161219273
Merged-chr2-120561734-2	chr2	120561634	120561834	+	619.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_011743, intron 1 of 21)	intron (NM_011743, intron 1 of 21)	2125.0	NM_011743	20402.0	Mm.485295	NM_011743	ENSMUSG00000027288	Zfp106	Cd-1|D2Dcr28|EyeLinc12|H3a|Sh3bp3|Znf106|sirm|zfp-106	zinc finger protein 106	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-40757394-6	chr9	40757302	40757502	+	923.0972289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133733, intron 1 of 6)	intron (NM_133733, intron 1 of 6)	-43871.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	0.509823461375193	0.26844846286015	0.434868039638277	0.257470293337951	0.393468439187616	0.878597603212635	0.439728742230313	0.785211911248433	1.94922571870264	0.272430015083687	1
Merged-chr4-33676-1	chr4	33576	33776	+	796.0	f1_c57bl6.idr	Intergenic	Intergenic	-3138407.0	NM_001167534	100312470.0	Mm.480297	NM_001167534	ENSMUSG00000115072	Vmn1r2	Gm11776	vomeronasal 1 receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-73560260-2	chr12	73560160	73560360	+	600.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11777.0	NR_044985	73644.0	Mm.369885	NR_044985	ENSMUSG00000113800	2210039B01Rik	-	RIKEN cDNA 2210039B01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78328219-1	chr15	78328119	78328319	+	628.0	f0_balb.idr	intron (NM_001358854, intron 2 of 14)	intron (NM_001358854, intron 2 of 14)	2229.0	NM_007780	12983.0	Mm.235324	NM_007780	ENSMUSG00000071713	Csf2rb	AI848964|AIC2B|Bc|CDw131|Csf2rb1|Csfgmrb|Il3r|Il3rb|Il3rb1|Il5rb	colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-78032230-4	chr11	78032133	78032333	+	980.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183286)	promoter-TSS (NM_183286)	-80.0	NM_183286	70451.0	Mm.390342	NM_183286	ENSMUSG00000020834	Dhrs13	2610209N15Rik	dehydrogenase/reductase (SDR family) member 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-86744880-3	chr17	86744768	86744968	+	761.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8996.0	NM_010137	13819.0	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	0.975560524494986	1.10695129244423	1.06680799897722	1.91286044501718	2.62662911965785	3.12405946318466	1.62012037325898	3.20567810130364	3.61252326777482	0.00131259761807864	0.0243033120705363
Merged-chr16-37539792-4	chr16	37539691	37539891	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028812)	promoter-TSS (NM_028812)	-2.0	NM_001355727	74197.0	Mm.287795	NM_028812	ENSMUSG00000022828	Gtf2e1	2610024P03Rik|56kDa|AI303800|FE|TFIIE-A	general transcription factor II E, polypeptide 1 (alpha subunit)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-15228187-3	chr14	15228064	15228264	+	805.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-209459.0	NR_152122	77981.0	Mm.138039	NM_001033183		B230110C06Rik	-	RIKEN cDNA B230110C06 gene	ncRNA	2.27839808218589	2.79255684384614	3.03418606054446	3.1451726549129	2.58935216893825	2.14203401055179	1.65678513731942	1.34687440879348	-1.72967471794331	0.0475205958525696	0.316372639286098
Merged-chr1-39547425-1	chr1	39547325	39547525	+	551.0	f0_balb.idr	TTS (NM_028043)	TTS (NM_028043)	1415.0	NR_028555	100217461.0		NR_028555	ENSMUSG00000077704	Snord89	MBII-289	small nucleolar RNA, C/D box 89	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115513447-3	chr5	115513355	115513555	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011223, intron 1 of 10)	ID_B1|SINE|B4	6779.0	NM_133915	19303.0	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	3.69635517273744	4.01394013096698	4.69379702057929	4.56859149551495	5.62355945238165	5.8818313862079	5.36264668103796	5.30741204144258	1.50843697758725	1.48404553804205e-05	0.000636874233416821
Merged-chr16-78560305-4	chr16	78560201	78560401	+	986.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040569)	promoter-TSS (NR_040569)	-15.0	NR_040569	75818.0	Mm.410817	NR_040569		4930478L05Rik	-	RIKEN cDNA 4930478L05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-38760920-4	chr16	38760777	38760977	+	934.133301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152434, intron 4 of 6)	intron (NR_152434, intron 4 of 6)	18618.0	NM_001285793	56375.0	Mm.182377	NM_019804	ENSMUSG00000022793	B4galt4	9130402O08Rik|B4galt-IV|b4Gal-T4|beta4Gal-T4|beta4GalT-IV	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-100936334-4	chr12	100936232	100936432	+	894.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026681, intron 20 of 29)	intron (NM_026681, intron 20 of 29)	-28134.0	NM_001177673	238377.0	Mm.32160	NM_175493	ENSMUSG00000047415	Gpr68	BB131428|Ogr1	G protein-coupled receptor 68	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55848334-2	chr19	55848234	55848434	+	796.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_138565, intron 4 of 15)	intron (NR_138565, intron 4 of 15)	-46987.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-87479210-3	chr16	87479107	87479307	+	968.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_024258, exon 14 of 18)	exon (NM_024258, exon 14 of 18)	16662.0	NM_009840	12469.0	Mm.328673	NM_009840	ENSMUSG00000025613	Cct8	AI132397|Cctq|Tcpq	chaperonin containing Tcp1, subunit 8 (theta)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-145252774-4	chr4	145252677	145252877	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5907.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-17584159-4	chr6	17584075	17584275	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52835.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-118029298-2	chr2	118029198	118029398	+	582.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_126479, intron 7 of 9)	intron (NR_126479, intron 7 of 9)	81904.0	NR_126479	329496.0	Mm.235844	NR_126479	ENSMUSG00000087203	Gm13986	C230060E24	predicted gene 13986	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-104996626-2	chr3	104996526	104996726	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-34917.0	NM_009520	22414.0	Mm.10740	NM_009520	ENSMUSG00000027840	Wnt2b	Wnt13	wingless-type MMTV integration site family, member 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64231005-4	chr5	64230882	64231082	+	978.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 1 of 18)	intron (NM_001289514, intron 1 of 18)	625.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-134184008-4	chr5	134183905	134184105	+	928.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053266)	promoter-TSS (NM_053266)	-33.0	NM_001359852	114674.0	Mm.218744	NM_053266	ENSMUSG00000015942	Gtf2ird2	1700012P16Rik	GTF2I repeat domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141012321-2	chr4	141012221	141012421	+	789.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008546, intron 1 of 8)	intron (NM_008546, intron 1 of 8)	1684.0	NM_008546	17150.0	Mm.7386	NM_008546	ENSMUSG00000060572	Mfap2	AI893631|Magp|Magp1	microfibrillar-associated protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135189324-2	chr5	135189224	135189424	+	688.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011714, intron 1 of 18)	intron (NM_011714, intron 1 of 18)	2001.0	NM_011714	22385.0	Mm.40331	NM_011714	ENSMUSG00000002748	Baz1b	C87820|WSTF|Wbscr9	bromodomain adjacent to zinc finger domain, 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33989797-2	chr16	33989697	33989897	+	980.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_177357, exon 54 of 60)	exon (NM_177357, exon 54 of 60)	-22759.0	NM_009471	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-138117868-2	chr5	138117768	138117968	+	628.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_011757, exon 2 of 5)	5' UTR (NM_011757, exon 2 of 5)	963.0	NM_001044705	22697.0	Mm.2760	NM_011757	ENSMUSG00000037017	Zscan21	AI326272|CTfin51|RU49|Zfp-38|Zfp38|Zipro1	zinc finger and SCAN domain containing 21	protein-coding	-1.58994551673671	-1.55912852307891	-1.56844783632235	-1.57610299769523	-1.18549093183599	-1.55710898902261	-1.56633814807757	-1.57473272746952	1.78703309985663	0.610309988231842	1
Merged-chr5-21185776-2	chr5	21185676	21185876	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175437)	promoter-TSS (NM_175437)	-491.0	NR_153365	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-85029376-2	chr8	85029276	85029476	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026760, intron 1 of 2)	intron (NM_026760, intron 1 of 2)	2543.0	NM_026760	68544.0	Mm.196005	NM_026760	ENSMUSG00000041203	Trir	1110002H14Rik|2310036O22Rik|AI854688	telomerase RNA component interacting RNase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-83122812-4	chr15	83122705	83122905	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029101)	promoter-TSS (NM_029101)	-4.0	NM_029101	74778.0	Mm.30056	NM_029101	ENSMUSG00000018040	Rrp7a	1110014J01Rik|AA408146|Kheg1	ribosomal RNA processing 7 homolog A (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-128065784-4	chr7	128065675	128065875	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008401, intron 2 of 29)	Lx8b|LINE|L1	3135.0	NM_008401	16409.0	Mm.262106	NM_008401	ENSMUSG00000030786	Itgam	CD11b/CD18|CR3|CR3A|Cd11b|F730045J24Rik|Ly-40|MAC1|Mac-1|Mac-1a	integrin alpha M	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-40108130-4	chr10	40108010	40108210	+	940.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 1 of 5)	intron (NM_001114332, intron 1 of 5)	34144.0	NM_028247	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-78836291-1	chr17	78836191	78836391	+	599.0	f0_balb.idr	promoter-TSS (NM_001081179)	promoter-TSS (NM_001081179)	775.0	NM_181649	53951.0	Mm.220253	NM_181649	ENSMUSG00000050668	Gpatch11	2310002B06Rik|C80922|Ccdc75|L26697	G patch domain containing 11	protein-coding	0.314709357609113	0.0936045062881752	0.378488024370365	0.354669880226438	0.209079209584414	0.0946024536399141	0.385267544965955	0.35884318364005	-0.190302739177343	0.918024862200483	1
Merged-chr14-27341649-4	chr14	27341550	27341750	+	932.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289687, intron 1 of 9)	MIRb|SINE|MIR	5613.0	NM_001289687	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78996780-4	chr15	78996676	78996876	+	832.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045746, intron 2 of 2)	intron (NR_045746, intron 2 of 2)	-5447.0	NR_105921	102465577.0		NR_105921	ENSMUSG00000099180	Mir6956	Gm27880|mmu-mir-6956	microRNA 6956	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-135732052-2	chr1	135731952	135732152	+	616.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007791, intron 1 of 5)	intron (NM_007791, intron 1 of 5)	2885.0	NM_007791	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34212128-1	chr17	34212028	34212228	+	664.5	f1_balb.idr	intron (NM_011530, intron 6 of 11)	intron (NM_011530, intron 6 of 11)	7649.0	NM_011530	21355.0	Mm.14814	NM_011530	ENSMUSG00000024339	Tap2	ABC18|AI462429|APT2|Abcb3|Ham-2|Ham2|MTP2|PSF2|RING11|Tap-2|Y1|jas	transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)	protein-coding	0.51061835983404	0.545165466018636	1.57306263307671	1.01719095614999	0.68656014040653	0.547653258376011	1.30987952881391	0.884712609768184	-0.461178172643295	0.774433170545728	0.998431161219273
Merged-chr11-33997710-2	chr11	33997610	33997810	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_155520, intron 4 of 4)	intron (NR_155520, intron 4 of 4)	-4517.0	NM_001190886	70357.0	Mm.252514	NM_027398	ENSMUSG00000053519	Kcnip1	KCHIP1|Kchip1.2	Kv channel-interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-59806728-4	chr4	59806616	59806816	+	979.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172468, intron 1 of 8)	intron (NM_172468, intron 1 of 8)	1066.0	NM_172468	209131.0	Mm.259705	NM_172468	ENSMUSG00000028385	Snx30	4732481H14Rik|C030041J06Rik	sorting nexin family member 30	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-113675405-2	chr6	113675305	113675505	+	621.400024	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 5 of 11)	intron (NM_001113553, intron 5 of 11)	-21645.0	NM_001347356	381801.0	Mm.333322	NM_001033463	ENSMUSG00000056952	Tatdn2	AI646012|mKIAA0218	TatD DNase domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19935432-8	chr7	19935337	19935537	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19A|LTR|ERVK	-14294.0	NM_027514	52118.0	Mm.227506	NM_027514	ENSMUSG00000040511	Pvr	3830421F03Rik|CD155|D7Ertd458e|HVED|PVS|Taa1|Tage4|mE4|necl-5	poliovirus receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-112646026-2	chr12	112645926	112646126	+	660.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161737, intron 1 of 2)	intron (NM_001161737, intron 1 of 2)	1198.0	NM_013929	30954.0	Mm.289812	NM_013929	ENSMUSG00000064326	Siva1	CD27bp|Siva	SIVA1, apoptosis-inducing factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-129574691-4	chr7	129574595	129574795	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17168.0	NM_172255	207425.0	Mm.229323	NM_172255	ENSMUSG00000042055	Wdr11	2900055P10Rik|AW489876|Brwd2|mKIAA1351	WD repeat domain 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55743632-4	chr19	55743513	55743713	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_138565, intron 3 of 15)	intron (NR_138565, intron 3 of 15)	1803.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83710621-2	chr6	83710521	83710721	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011912)	promoter-TSS (NM_011912)	204.0	NR_075094	574519.0	Mm.487605	NR_002871	ENSMUSG00000085794	Vax2os	Vas2os|Vax2os1|Vax2os2	ventral anterior homeobox 2, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132639572-3	chr4	132639457	132639657	+	644.777771	f0_balb.idr|f0_c57.idr|f1_balb.idr	intron (NM_010166, intron 1 of 17)	intron (NM_010166, intron 1 of 17)	511.0	NM_010166	14050.0	Mm.227733	NM_010166	ENSMUSG00000028886	Eya3	AI844637	EYA transcriptional coactivator and phosphatase 3	protein-coding	2.09164170209749	2.20341347871889	2.65379415355925	1.93890623020624	1.8635212137469	2.21890956524697	2.39040861074196	2.31919340806687	-0.100827396007106	0.906308149051995	0.998431161219273
Merged-chr14-30722594-2	chr14	30722481	30722681	+	619.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166532, intron 1 of 20)	B2_Mm2|SINE|B2	6966.0	NM_001166532	54650.0	Mm.294662	NM_019460	ENSMUSG00000006527	Sfmbt1	4930442N21Rik|9330180L21Rik|AA536974|Sfmbt|Smr	Scm-like with four mbt domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59622824-3	chr15	59622723	59622923	+	688.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25831.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-48350421-4	chr2	48350330	48350530	+	894.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-463679.0	NM_007396	11480.0	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-125059263-4	chr4	125059170	125059370	+	762.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175223, intron 4 of 5)	intron (NM_175223, intron 4 of 5)	6387.0	NM_175223	75563.0	Mm.50304	NM_175223	ENSMUSG00000042707	Dnali1	1700023A09Rik|AW049135	dynein, axonemal, light intermediate polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-91665731-3	chr12	91665659	91665859	+	941.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 4 of 6)	intron (NM_175367, intron 4 of 6)	-75272.0	NM_175335	83602.0	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-53159972-2	chr18	53159872	53160072	+	579.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16320.0	NM_001357463	67804.0	Mm.252171	NM_026386	ENSMUSG00000034484	Snx2	0610030A03Rik	sorting nexin 2	protein-coding	-1.8418762459921	-1.8125357239735	-1.82140854000656	-1.82869693527674	-1.56059678980999	-1.8106129477253	-1.81939992894326	-1.82739231600805	1.3620893379502	0.699511506488145	1
Merged-chr3-65978205-2	chr3	65978105	65978305	+	771.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-19956.0	NM_001355432	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-78429065-2	chr9	78428965	78429165	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14172.0	NR_125721	214763.0	Mm.101559	NM_173386	ENSMUSG00000032344	Mb21d1	E330016A19Rik|cGAS	Mab-21 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-98512110-2	chr15	98512010	98512210	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	7724.0	NR_034051	100217417.0	Mm.486440	NR_034051	ENSMUSG00000065336	Snora34	MBI-89	small nucleolar RNA, H/ACA box 34	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-114556775-1	chr4	114556675	114556875	+	717.0	f1_c57bl6.idr	intron (NM_001085549, intron 2 of 6)	intron (NM_001085549, intron 2 of 6)	150051.0	NM_001085549	666048.0	Mm.331779	NM_001085549	ENSMUSG00000070867	Trabd2b	Gm12824|Hkat	TraB domain containing 2B	protein-coding	1.11570325375348	0.466101820725424	1.05397465811662	0.451000928390987	0.951005261056185	0.468011073670653	1.06580908299087	0.452156132190754	-0.241686340938661	0.8923515609803	1
Merged-chr3-45254997-3	chr3	45254894	45255094	+	693.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	123266.0	NR_045172	72511.0	Mm.140700	NR_045172	ENSMUSG00000097040	2610316D01Rik	-	RIKEN cDNA 2610316D01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-7316009-4	chr17	7315930	7316130	+	922.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8630.0	NM_011553	21461.0	Mm.264651	NM_011553	ENSMUSG00000071322	Tcp10a	D17Leh66A|D17Leh66aa|Gm10326|T66A-a|Tcp-10a	t-complex protein 10a	protein-coding	1.47518122594664	2.07094546479549	2.29715275282216	1.36673254271979	1.85925644295957	1.44276807492219	2.12580688745354	1.83539674299224	-0.0775972063798807	0.940025642509591	0.998431161219273
Merged-chr13-45623975-3	chr13	45623882	45624082	+	864.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199304, intron 5 of 6)	(ATG)n|Simple_repeat|Simple_repeat	116538.0	NM_025508	66355.0	Mm.290802	NM_025508	ENSMUSG00000000253	Gmpr	2310004P21Rik|AV028449|GMPR 1	guanosine monophosphate reductase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152585720-4	chr1	152585623	152585823	+	990.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 3 of 17)	intron (NM_016846, intron 3 of 17)	39494.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-91293919-3	chr1	91293824	91294024	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4414.0	NM_016717	50880.0	Mm.25724	NM_016717	ENSMUSG00000026307	Scly	9830169H08|A930015N15Rik|SCL|Scly1|Scly2	selenocysteine lyase	protein-coding	4.00720791583835	3.89871547516948	4.08642908645094	3.54091197330745	5.37259134429299	6.10487426071742	5.80450283526709	5.59538501310039	2.20988156726806	1.71386098327424e-10	3.38948968307543e-08
Merged-chr9-16314356-2	chr9	16314256	16314456	+	583.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080814, intron 1 of 24)	MTC|LTR|ERVL-MaLR	63875.0	NM_001080814	270120.0	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT atypical cadherin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114931264-4	chr11	114931172	114931372	+	982.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199221, intron 1 of 3)	intron (NM_199221, intron 1 of 3)	3114.0	NM_001347651	217304.0	Mm.185355	NM_199221	ENSMUSG00000063193	Cd300lb	CLM-7|Clm7|Gm253|LMIR5	CD300 molecule like family member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-72890282-4	chr17	72890183	72890383	+	901.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28022.0	NM_029999	77889.0	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-124027503-4	chr9	124027414	124027614	+	923.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009914, intron 1 of 1)	intron (NM_009914, intron 1 of 1)	5543.0	NM_009914	12771.0	Mm.57050	NM_009914	ENSMUSG00000035448	Ccr3	CC-CKR3|CKR3|Cmkbr1l2|Cmkbr3	chemokine (C-C motif) receptor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-136135210-4	chr1	136135098	136135298	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039472, intron 1 of 34)	intron (NM_001039472, intron 1 of 34)	3808.0	NR_153829	16565.0	Mm.276135	NM_019962	ENSMUSG00000041642	Kif21b	2610511N21Rik|mKIAA0449	kinesin family member 21B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-26534804-4	chr2	26534695	26534895	+	938.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30868.0	NR_132655	102639736.0		NR_132655		Gm35978	-	predicted gene, 35978	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-31054155-4	chr5	31054095	31054295	+	854.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023525)	promoter-TSS (NM_023525)	-585.0	NM_023525	69719.0	Mm.305535	NM_023525	ENSMUSG00000013629	Cad	2410008J01Rik|AU018859|Cpad	carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-115315531-4	chr10	115315427	115315627	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024454)	promoter-TSS (NM_024454)	64.0	NM_024454	216344.0	Mm.21936	NM_024454	ENSMUSG00000020132	Rab21	9630024B22	RAB21, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-30063309-4	chr16	30063212	30063412	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2045.0	NM_008235	15205.0	Mm.390859	NM_008235	ENSMUSG00000022528	Hes1	Hry|bHLHb39	hes family bHLH transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-130900329-4	chr3	130900240	130900440	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-169942.0	NM_001005859	68436.0	Mm.140568	NM_026724	ENSMUSG00000062006	Rpl34	1100001I22Rik	ribosomal protein L34	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35045779-2	chr17	35045679	35045879	+	696.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013600, intron 2 of 23)	intron (NM_013600, intron 2 of 23)	843.0	NM_013600	17687.0	Mm.24192	NM_013600	ENSMUSG00000007035	Msh5	Mut5	mutS homolog 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-113751870-4	chr11	113751775	113751975	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020006)	promoter-TSS (NM_020006)	-60.0	NM_001163346	56699.0	Mm.293378	NM_020006	ENSMUSG00000041598	Cdc42ep4	1500041M20Rik|Borg4|CEP4	CDC42 effector protein (Rho GTPase binding) 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-17583288-3	chr16	17583133	17583333	+	668.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-6343.0	NM_001359891	224022.0	Mm.298878	NM_144852	ENSMUSG00000022756	Slc7a4	AI853530	solute carrier family 7 (cationic amino acid transporter, y+ system), member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-137789262-2	chr5	137789162	137789362	+	590.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001005426, intron 1 of 16)	intron (NM_001005426, intron 1 of 16)	1460.0	NM_001005426	381678.0	Mm.332765	NM_001005426	ENSMUSG00000037108	Zcwpw1	Gm1053	zinc finger, CW type with PWWP domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-22799657-2	chr18	22799557	22799757	+	674.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361224, intron 7 of 10)	intron (NM_001361224, intron 7 of 10)	239006.0	NM_001161483	319211.0	Mm.209896	NM_199024	ENSMUSG00000041923	Nol4	1700013J13Rik|4930568N03Rik|Gm1262	nucleolar protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-61021720-1	chr19	61021620	61021820	+	674.0	f0_balb.idr	intron (NM_018869, intron 2 of 15)	intron (NM_018869, intron 2 of 15)	119120.0	NR_131956	414758.0	Mm.100056	NM_001001737	ENSMUSG00000074733	Zfp950	5830428H23Rik|AU016073|BC055757|Gm34518|Zfp826|mszf84	zinc finger protein 950	protein-coding	0.209901074693395	0.235027823195806	0.226880467342185	0.220539653924323	0.517311879870123	1.23447118634135	0.740049747147079	0.564902235036541	4.39570204289757	0.0176367862968355	1
Merged-chr12-100187591-4	chr12	100187502	100187702	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045282)	promoter-TSS (NR_045282)	-366.0	NR_045282	100038378.0	Mm.387075	NR_045282	ENSMUSG00000072884	Gm10433	-	predicted gene 10433	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-120187801-4	chr6	120187694	120187894	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016718, intron 1 of 3)	intron (NM_016718, intron 1 of 3)	-6029.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-138923112-4	chr1	138923014	138923214	+	966.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-40595.0	NM_001166501	329260.0	Mm.337604	NM_181347	ENSMUSG00000056268	Dennd1b	4632404N19Rik|4930467M19Rik|6820401H01Rik|F730008N07Rik	DENN/MADD domain containing 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-146834982-2	chr2	146834868	146835068	+	656.0	f0_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20921.0	NM_001033298	228730.0	Mm.292352	NM_001033298	ENSMUSG00000074749	Kiz	Gm114|Ncrna00153|Plk1s1	kizuna centrosomal protein	protein-coding	1.16582555501746	0.551953640857449	0.688834885523894	0.325456137462443	1.18128442612714	0.342429295449692	0.333926601836309	0.326611534065207	-0.532052446763346	0.775425218690703	1
Merged-chr2-132293945-2	chr2	132293845	132294045	+	859.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291040, intron 2 of 3)	intron (NM_001291040, intron 2 of 3)	8006.0	NM_001291039	110911.0	Mm.284503	NM_138651	ENSMUSG00000058793	Cds2	5730450N06Rik|5730460C18Rik|AI854580|D2Wsu127e	CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-61774901-4	chr14	61774802	61775002	+	915.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-92529.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117476037-4	chr8	117475927	117476127	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16762.0	NR_106046	102465653.0		NR_106046	ENSMUSG00000098483	Mir7078	Gm27386|mmu-mir-7078	microRNA 7078	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-183299346-4	chr1	183299234	183299434	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181732, intron 1 of 9)	RLTR33|LTR|ERVK	-2041.0	NR_151660	71678.0	Mm.392270	NM_027861	ENSMUSG00000046836	Brox	0610010K06Rik	BRO1 domain and CAAX motif containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-164360447-4	chr2	164360347	164360547	+	796.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3940.0	NM_011414	20568.0	Mm.371583	NM_011414	ENSMUSG00000017002	Slpi	ALP	secretory leukocyte peptidase inhibitor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-102624719-1	chr9	102624619	102624819	+	547.0	f1_c57bl6.idr	intron (NM_001081122, intron 1 of 16)	intron (NM_001081122, intron 1 of 16)	1405.0	NM_001301689	28135.0	Mm.38910	NM_001081122	ENSMUSG00000032534	Cep63	4921501M07|AL450317.13gm1|AW107703|CD20R|D9Mgc41|D9Mgc48e|ET2	centrosomal protein 63	protein-coding	1.41628498474451	1.36613102068533	0.791840132284573	1.39631920506537	0.766130239673824	0.808310285697737	1.67271565838172	1.51360865833146	-0.00723624142268429	0.996000305473233	0.99877514334439
Merged-chr18-49502261-2	chr18	49502161	49502361	+	666.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	-21028.0	NR_033785	67321.0	Mm.245802	NR_033785	ENSMUSG00000100297	1700044K03Rik	-	RIKEN cDNA 1700044K03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-27261258-4	chr8	27261166	27261366	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007918, intron 1 of 2)	intron (NM_007918, intron 1 of 2)	939.0	NM_007918	13685.0	Mm.6700	NM_007918	ENSMUSG00000031490	Eif4ebp1	4e-bp1|AA959816|PHAS-I	eukaryotic translation initiation factor 4E binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-34317581-4	chr6	34317485	34317685	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009658)	promoter-TSS (NM_009658)	-96.0	NM_009658	11677.0	Mm.451	NM_009658	ENSMUSG00000001642	Akr1b3	ALR2|AR|Ahr-1|Ahr1|Akr1b1|Aldor1|Aldr1	aldo-keto reductase family 1, member B3 (aldose reductase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141376617-2	chr7	141376517	141376717	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11507.0	NR_033532	320871.0	Mm.475463	NM_177280	ENSMUSG00000086844	B230206H07Rik	-	RIKEN cDNA B230206H07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-33642464-2	chr8	33642364	33642564	+	707.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178648)	promoter-TSS (NM_178648)	-488.0	NM_178648	108159.0	Mm.29301	NM_178648	ENSMUSG00000052906	Ubxn8	D0H8S2298E|Rep-8|Rep8h|Ubxd6	UBX domain protein 8	protein-coding	2.77250898674481	3.00480247194729	2.90624646080066	2.20927931967989	3.21490359578633	3.02634853036197	2.44754185285395	2.74052250483039	0.264759200293089	0.704539847202528	0.998431161219273
Merged-chr1-4858121-1	chr1	4858021	4858221	+	1000.0	f0_balb.idr	promoter-TSS (NM_001159751)	promoter-TSS (NM_001159751)	-207.0	NM_001159751	21399.0	Mm.207263	NM_011541	ENSMUSG00000033813	Tcea1	S-II	transcription elongation factor A (SII) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-102189612-4	chr11	102189495	102189695	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175935)	promoter-TSS (NM_175935)	-104.0	NM_175935	68401.0	Mm.22385	NM_175935	ENSMUSG00000034793	G6pc3	0710001K01Rik|AU019276|AU045429|AV128920|AW545836|UGRP	glucose 6 phosphatase, catalytic, 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-180045529-4	chr2	180045430	180045630	+	964.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178750, intron 1 of 10)	intron (NM_178750, intron 1 of 10)	3047.0	NM_178750	269397.0	Mm.63068	NM_178750	ENSMUSG00000039086	Ss18l1	A230053O16Rik|CREST	SS18, nBAF chromatin remodeling complex subunit like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-77421769-3	chr8	77421678	77421878	+	646.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030113, intron 5 of 22)	intron (NM_030113, intron 5 of 22)	-95278.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-6476919-4	chr2	6476812	6477012	+	941.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	124176.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-67188988-4	chr14	67188889	67189089	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44303.0	NM_010095	13592.0	Mm.319947	NM_010095	ENSMUSG00000022053	Ebf2	D14Ggc1e|EBF-2|Mmot1|O/E-3|OE-3	early B cell factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-12059597-3	chr2	12059474	12059674	+	845.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-241672.0	NR_040353	338535.0	Mm.483275	NR_040353	ENSMUSG00000086843	E030013I19Rik	-	RIKEN cDNA E030013I19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-136466123-4	chr6	136466037	136466237	+	995.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50568.0	NM_001201390	100502936.0	Mm.21182	NM_001201390	ENSMUSG00000045291	E330021D16Rik	C85549	RIKEN cDNA E330021D16 gene	protein-coding	1.25256666303197	0.759797457093294	0.202993747686245	0.196550291695628	0.730611825626216	0.213117999958114	0.204825725618009	0.197679944263644	-1.84898854084116	0.36503956724263	1
Merged-chr4-126201880-4	chr4	126201788	126201988	+	983.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356456)	promoter-TSS (NM_001356456)	822.0	NM_001356455	230753.0	Mm.29813	NM_146153	ENSMUSG00000043962	Thrap3	9330151F09Rik|B230333E16Rik|Trap150	thyroid hormone receptor associated protein 3	protein-coding	2.13201464476831	1.82358821845391	2.12749881445256	1.84971477044909	1.77416333878142	1.97958799918173	1.21436408717676	1.85879992020026	-0.743437013809557	0.463926958582899	0.922064436622467
Merged-chr2-121140527-4	chr2	121140444	121140644	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177846, exon 1 of 1)	exon (NM_177846, exon 1 of 1)	116.0	NM_001290812	75894.0	Mm.384805	NM_029475	ENSMUSG00000027259	Adal	4930578F03Rik	adenosine deaminase-like	protein-coding	5.53516360131263	4.94822441973442	5.62370263318734	4.75557067760781	4.92007380640945	4.06168161171155	5.245073387671	4.50471455105789	-0.606238990625153	0.0985693413547747	0.488292384839112
Merged-chr11-116030355-5	chr11	116030289	116030489	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172569)	promoter-TSS (NM_172569)	73.0	NM_172569	217331.0	Mm.297706	NM_172569	ENSMUSG00000020770	Unk	B230379M23Rik|Unkh|Zc3h5|Zc3hdc5|mKIAA1753	unkempt family zinc finger	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34932743-2	chr17	34932643	34932843	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_010893, exon 3 of 6)	exon (NM_010893, exon 3 of 6)	1490.0	NM_010893	18010.0	Mm.8856	NM_010893	ENSMUSG00000007038	Neu1	AA407268|AA407316|Aglp|Apl|Bat-7|Bat7|G9|Map-2|Neu|Neu-1	neuraminidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-46595867-3	chr18	46595793	46595993	+	703.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025698, intron 1 of 2)	intron (NM_025698, intron 1 of 2)	1642.0	NM_025698	66676.0	Mm.296043	NM_025698	ENSMUSG00000033184	Tmed7	3930401E15Rik|5830493P14Rik|AU044611|AW545765|TRAM	transmembrane p24 trafficking protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-14197351-4	chr10	14197219	14197419	+	851.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	230940.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	2.30961316638369	2.26976513701526	1.5716247118737	2.24358598675053	2.32842107708298	2.28620136101281	1.58115292218518	2.25488513310241	0.0371822606333593	0.967705658618323	0.998431161219273
Merged-chr1-189830868-1	chr1	189830768	189830968	+	616.0	f1_c57bl6.idr	intron (NM_008976, intron 5 of 18)	intron (NM_008976, intron 5 of 18)	91423.0	NM_026796	226830.0	Mm.156895	NM_026796	ENSMUSG00000026603	Smyd2	1110020E07Rik|4930402C15|KMT3C|Zmynd14	SET and MYND domain containing 2	protein-coding	-0.578202621969809	-0.812505685745699	-0.653259361246202	-0.817048949343274	-0.57237507443654	-0.809948255379107	-0.649239402662237	-0.816711952583507	0.0412402549988464	0.987766716214068	1
Merged-chr3-79886033-3	chr3	79885968	79886168	+	792.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_133187, exon 1 of 4)	5' UTR (NM_133187, exon 1 of 4)	138.0	NM_133187	68659.0	Mm.427274	NM_133187	ENSMUSG00000027955	Fam198b	1110032E23Rik|2210419I08Rik|AV011458|Ened	family with sequence similarity 198, member B	protein-coding	-0.188849845743341	-0.176946616148403	0.237158995472255	-0.0342090725099723	-0.0554698435121162	-0.176058282819426	0.245957730010907	-0.031587261515724	0.303875928701059	0.887052197395433	1
Merged-chr5-150155656-4	chr5	150155560	150155760	+	859.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-104270.0	NM_172887	320365.0	Mm.216590	NM_172887	ENSMUSG00000056602	Fry	13CDNA73|9330186A19Rik|AF346502|AI462658|C87180|D930046M03|cg003|mKIAA4143	FRY microtubule binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-91740944-2	chr7	91740845	91741045	+	781.0	f0_balb.idr|f1_balb.idr	intron (NM_011807, intron 3 of 22)	MTD|LTR|ERVL-MaLR	-321449.0	NM_001243046	23859.0	Mm.147213	NM_011807	ENSMUSG00000052572	Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|Gm21505|PSD93	discs large MAGUK scaffold protein 2	protein-coding	0.637860480513161	0.701018623016652	0.681144232442694	0.665292058586549	1.55551629999108	2.26799257413223	1.15183083416901	1.85390336942838	5.27841031506042	0.000407475811683443	0.00949914790526804
Merged-chr1-157433604-1	chr1	157433504	157433704	+	839.0	f0_balb.idr	Intergenic	Intergenic	-21009.0	NM_177644	226525.0	Mm.235028	NM_177644	ENSMUSG00000070565	Rasal2	6530401P13|A330066M24Rik	RAS protein activator like 2	protein-coding	0.289402111335159	0.320578075880386	0.31053556424492	0.30267669872754	0.291395608604041	1.2748368758457	1.10305899922854	1.04779376927335	4.59350284232994	0.0148819119984306	1
Merged-chr12-17666795-4	chr12	17666687	17666887	+	953.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24022.0	NM_001361645	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	-1.84249666652287	-1.81280314203583	-1.821782708929	-1.8291587925341	-1.69912265473888	-1.81085723243092	-1.81974993181089	-1.68654889582706	1.42917657148143	0.685329973313288	1
Merged-chr10-39458994-4	chr10	39458888	39459088	+	983.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122893, intron 3 of 13)	intron (NM_001122893, intron 3 of 13)	89189.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129175809-4	chr2	129175728	129175928	+	983.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4845.0	NR_045264	100048701.0	Mm.428544	NR_045264	ENSMUSG00000084826	AI847159	-	expressed sequence AI847159	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45025717-1	chr7	45025617	45025817	+	645.0	f1_c57bl6.idr	Intergenic	Intergenic	6120.0	NM_001360133	20130.0	Mm.389894	NM_009101	ENSMUSG00000038387	Rras	AI573426	related RAS viral (r-ras) oncogene	protein-coding	1.79559892322299	2.03890377018353	0.96594758597979	1.46967419814419	1.72497492030302	0.986796907936246	1.52483231864718	1.3312594604665	-0.696857585302051	0.573591257137586	0.964527909969019
Merged-chr4-34935818-1	chr4	34935718	34935918	+	546.0	f1_balb.idr	Intergenic	B2_Mm1a|SINE|B2	-24337.0	NR_040652	73696.0	Mm.1361	NR_040652	ENSMUSG00000085824	Platr9	2410114N07Rik	pluripotency associated transcript 9	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-22444117-2	chr16	22444017	22444217	+	863.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4547.0	NM_023794	104156.0	Mm.155708	NM_023794	ENSMUSG00000013089	Etv5	1110005E01Rik|8430401F14Rik|ERM	ets variant 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-54958759-2	chr11	54958659	54958859	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199275, intron 1 of 18)	intron (NM_001199275, intron 1 of 18)	4181.0	NM_021327	57783.0	Mm.259671	NM_021327	ENSMUSG00000020400	Tnip1	ABIN|ABIN-1|ABIN1|AU018810|Naf1|Nef|VAN	TNFAIP3 interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-17862430-1	chr17	17862330	17862530	+	630.666687	f0_balb.idr	Intergenic	Intergenic	-7242.0	NM_008215	15116.0	Mm.255701	NM_008215	ENSMUSG00000003665	Has1	HAS	hyaluronan synthase 1	protein-coding	2.23380977182139	1.11070367211345	2.02300253475548	1.50970392173889	2.98983890309891	1.8137667960904	1.74859748054474	1.06222849742756	0.792630651022366	0.485040583179861	0.931753689758342
Merged-chr19-45015728-3	chr19	45015660	45015860	+	855.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145503, intron 1 of 4)	CpG	550.0	NM_001130525	226154.0	Mm.28204	NM_145503	ENSMUSG00000035342	Lzts2	BC014695|LAPSER1|mKIAA1813	leucine zipper, putative tumor suppressor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-72270576-2	chr5	72270476	72270676	+	735.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_003966, intron 15 of 22)	intron (NR_003966, intron 15 of 22)	67233.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-3270997-4	chr15	3270886	3271086	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009155)	promoter-TSS (NM_009155)	9.0	NM_009155	20363.0	Mm.392203	NM_009155	ENSMUSG00000064373	Selenop	AU018766|D15Ucla1|Se-P|Sepp1|selp	selenoprotein P	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-47460766-2	chr19	47460718	47460918	+	597.5	f0_balb.idr|f1_balb.idr	intron (NM_008018, intron 1 of 14)	intron (NM_008018, intron 1 of 14)	3593.0	NM_001164717	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	0.288212646357825	0.534882203491599	0.307055208779245	0.300028639817208	1.25112086721935	1.12929465906327	0.309051906565639	0.651300249534582	3.68943677474011	0.0478819920862248	1
Merged-chr11-115068300-2	chr11	115068200	115068400	+	599.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6261.0	NM_172050	217306.0	Mm.222667	NM_172050	ENSMUSG00000048498	Cd300e	BC034097|CLM2|Cd300le|TREM5	CD300E molecule	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84012182-2	chr8	84012082	84012282	+	603.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291292)	promoter-TSS (NM_001291292)	-462.0	NM_001291292	70134.0	Mm.41017	NM_001291292	ENSMUSG00000074217	2210011C24Rik	-	RIKEN cDNA 2210011C24 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191199241-3	chr1	191199125	191199325	+	939.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15892.0	NM_007498	11910.0	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-23585971-4	chr13	23585863	23586063	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290530)	promoter-TSS (NM_001290530)	7.0	NM_001290530	319179.0	Mm.440391	NM_178194	ENSMUSG00000047246	Hist1h2be	-	histone cluster 1, H2be	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-112658802-1	chr13	112658702	112658902	+	586.0	f0_c57.idr	Intergenic	MTC|LTR|ERVL-MaLR	-1964.0	NM_178746	268706.0	Mm.40834	NM_175376	ENSMUSG00000047789	Slc38a9	4833412L08Rik|6720411P22Rik|9130023D20Rik|9430067K09Rik|A730092C09	solute carrier family 38, member 9	protein-coding	0.951803692978779	0.468986204414249	1.17420999828389	0.453126251980706	1.29561236135328	0.470987832462273	0.656795762246165	0.634858820704528	0.0477054248600755	0.977469967056741	1
Merged-chr8-111300346-4	chr8	111300232	111300432	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146218)	promoter-TSS (NM_146218)	-110.0	NM_146218	234736.0	Mm.334816	NM_146218	ENSMUSG00000033596	Rfwd3	BC027246	ring finger and WD repeat domain 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-110452711-4	chr9	110452612	110452812	+	958.94165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360306, intron 2 of 9)	intron (NM_001360306, intron 2 of 9)	23982.0	NM_001360306	270201.0	Mm.41744	NM_177771	ENSMUSG00000054792	Klhl18	A930041K15|AW545966	kelch-like 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95225639-2	chr3	95225539	95225739	+	740.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_108026, intron 3 of 3)	intron (NR_108026, intron 3 of 3)	-2785.0	NM_172395	57912.0	Mm.28189	NM_172395	ENSMUSG00000046722	Cdc42se1	1300002M12Rik|AW558204|Cdcse1|SCIP1|Spec1	CDC42 small effector 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46709211-3	chr19	46709105	46709305	+	819.472229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020577, intron 4 of 10)	intron (NM_020577, intron 4 of 10)	1762.0	NM_020577	57344.0	Mm.28566	NM_020577	ENSMUSG00000003559	As3mt	2310045H08Rik|Cyt19	arsenic (+3 oxidation state) methyltransferase	protein-coding	2.0230930392199	1.40151331183265	1.06079042291702	1.03082393151669	2.71096319625187	1.10567092442478	3.13973846209552	2.72142992438858	2.73187640574525	0.0156909183516102	0.149967847888438
Merged-chr4-139248820-1	chr4	139248720	139248920	+	673.0	f1_c57bl6.idr	intron (NM_001037761, intron 2 of 9)	intron (NM_001037761, intron 2 of 9)	54709.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	-0.111565448257343	-0.545227518730844	-0.548459408470454	-0.550941108567326	-0.554430428142207	-0.544496634763374	-0.377771860892882	-0.144980882621382	0.29357657970118	0.912691822761524	1
Merged-chr7-28338840-4	chr7	28338744	28338944	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013676)	promoter-TSS (NM_013676)	-125.0	NM_013676	20924.0	Mm.285906	NM_013676	ENSMUSG00000003435	Supt5	AL033283|AL033321|AU019549|Spt5|Supt5h	suppressor of Ty 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-46305549-1	chr4	46305449	46305649	+	602.0	f0_balb.idr	Intergenic	Intergenic	-38645.0	NM_183298	110805.0	Mm.354634	NM_183298	ENSMUSG00000070990	Foxe1	Titf2	forkhead box E1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-49221280-2	chr13	49221180	49221380	+	786.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5254.0	NM_026738	68480.0	Mm.3336	NM_026738	ENSMUSG00000037960	Card19	1110007C09Rik|AI851695|Bincard	caspase recruitment domain family, member 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-30494468-3	chr17	30494366	30494566	+	929.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172618, intron 6 of 11)	intron (NM_172618, intron 6 of 11)	81821.0	NM_172618	224671.0	Mm.41220	NM_027060	ENSMUSG00000062202	Btbd9	1700023F20Rik|4930402L05|AI464421	BTB (POZ) domain containing 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141172831-4	chr7	141172727	141172927	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001172100)	promoter-TSS (NM_001172100)	24.0	NM_001172100	107702.0	Mm.197493	NM_145135	ENSMUSG00000038650	Rnh1	AW546468|C80305|RNH	ribonuclease/angiogenin inhibitor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-64304626-2	chr1	64304526	64304726	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-183237.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-124586822-3	chr8	124586718	124586918	+	992.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023709, intron 1 of 19)	intron (NM_023709, intron 1 of 19)	10707.0	NM_023709	73647.0	Mm.6209	NM_023709	ENSMUSG00000031981	Capn9	2200003B16Rik|GC36|nCL-4|nCL4	calpain 9	protein-coding	3.07953762754274	3.26313555976941	4.22571397870015	4.6157808127689	5.0233278689871	4.19692284476512	4.96937519098179	5.8112909827931	1.46472454433091	0.00221149714525204	0.0359533099576341
Merged-chr16-83133090-2	chr16	83132990	83133190	+	612.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-1238053.0	NR_040567	75247.0	Mm.417813	NR_040567		4930553E22Rik	-	RIKEN cDNA 4930553E22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19676013-4	chr7	19675902	19676102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001309799, intron 1 of 3)	intron (NM_001309799, intron 1 of 3)	1939.0	NM_001277944	11813.0	Mm.28394	NM_001277944	ENSMUSG00000002992	Apoc2	apo-CII|apoC-II	apolipoprotein C-II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-41245096-4	chr3	41244980	41245180	+	937.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-162034.0	NM_027558	70804.0	Mm.40321	NM_027558	ENSMUSG00000049940	Pgrmc2	4631434O19Rik|5730409G06Rik|DG6|PMBP	progesterone receptor membrane component 2	protein-coding	2.7365215094972	3.64765519896889	3.23255892308672	3.91315023999345	3.09158075817667	4.29322022576758	3.86023868148922	4.32539358926831	0.757376388990614	0.171282304450461	0.638755914366425
Merged-chr13-12028369-2	chr13	12028269	12028469	+	626.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023868, intron 1 of 104)	intron (NM_023868, intron 1 of 104)	78576.0	NM_023868	20191.0	Mm.239871	NM_023868	ENSMUSG00000021313	Ryr2	9330127I20Rik|RYR-2	ryanodine receptor 2, cardiac	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-94478126-1	chr3	94478026	94478226	+	656.0	f1_balb.idr	promoter-TSS (NM_001289616)	promoter-TSS (NM_001289616)	-169.0	NM_001289616	78784.0	Mm.44292	NM_172434	ENSMUSG00000028137	Celf3	4930415M08Rik|BRUNOL1|CAGH4|ERDA4|ETR-1|Tnrc4	CUGBP, Elav-like family member 3	protein-coding	0.510060078649484	0.262047089332613	0.255511285958785	0.78482136824221	0.243328077853061	0.764601769281761	0.256953235611151	0.888618570532067	0.6294680485294	0.745159184078557	1
Merged-chr1-120247344-4	chr1	120247168	120247368	+	800.733337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085409, intron 2 of 5)	L1MB7|LINE|L1	18012.0	NM_133186	68428.0	Mm.181033	NM_133186	ENSMUSG00000026389	Steap3	1010001D01Rik|Tsap6|pHyde	STEAP family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-78197366-3	chr17	78197277	78197477	+	816.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2871.0	NM_015800	50766.0	Mm.311912	NM_015800	ENSMUSG00000024074	Crim1	AU015004	cysteine rich transmembrane BMP regulator 1 (chordin like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-118380673-5	chr5	118380588	118380788	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	135461.0	NM_001081236	76792.0	Mm.103428	NM_001081236	ENSMUSG00000032840	2410131K14Rik	-	RIKEN cDNA 2410131K14 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-49252913-3	chr13	49252793	49252993	+	668.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1-int|LTR|ERVL-MaLR	-4187.0	NM_028340	66329.0	Mm.34308	NM_025491	ENSMUSG00000021384	Susd3	1700017I11Rik|2810440J20Rik	sushi domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-52362832-2	chr11	52362732	52362932	+	715.700012	f1_balb.idr|f1_c57bl6.idr	intron (NM_011694, intron 1 of 8)	intron (NM_011694, intron 1 of 8)	1970.0	NM_011694	22333.0	Mm.3555	NM_011694	ENSMUSG00000020402	Vdac1	AL033343|Vdac5|mVDAC1|mVDAC5	voltage-dependent anion channel 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-8920427-4	chr19	8920335	8920535	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024256)	promoter-TSS (NM_024256)	42.0	NM_024256	72727.0	Mm.259	NM_024256	ENSMUSG00000071649	B3gat3	2810405M13Rik	beta-1,3-glucuronyltransferase 3 (glucuronosyltransferase I)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32600279-2	chr2	32600179	32600379	+	722.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001276425)	TTS (NM_001276425)	570.0	NM_001025311	50935.0	Mm.88831	NM_016973	ENSMUSG00000026811	St6galnac6	ST6GalNAcVI|Siat7f	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101897899-2	chr7	101897799	101897999	+	621.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291352, intron 2 of 5)	intron (NM_001291352, intron 2 of 5)	1568.0	NM_001291349	75430.0	Mm.284491	NM_027532	ENSMUSG00000030649	Anapc15	3200002M19Rik|6330414C15Rik|APC15	anaphase prompoting complex C subunit 15	protein-coding	-0.29866096858944	-0.123731131092922	-0.292467907634884	-0.035034498628011	-0.0670859515204015	0.140826475736441	-0.291792957974212	-0.294406242262335	0.778784654769249	0.740869562354693	1
Merged-chr7-49471522-3	chr7	49471419	49471619	+	653.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175272, intron 10 of 37)	intron (NM_175272, intron 10 of 37)	165316.0	NM_001005232	13172.0	Mm.307176	NM_001005232	ENSMUSG00000030507	Dbx1	AI426026|Dbx	developing brain homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-136790339-1	chr3	136790239	136790439	+	793.0	f0_balb.idr	intron (NM_008913, intron 1 of 13)	intron (NM_008913, intron 1 of 13)	120273.0	NM_001293622	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-33902605-4	chr17	33902522	33902722	+	866.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2513.0	NR_040470	474160.0	Mm.206186	NR_040470	ENSMUSG00000092349	Platr17	-	pluripotency associated transcript 17	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-4572882-2	chr2	4572782	4572982	+	832.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177844, intron 3 of 11)	intron (NM_001177844, intron 3 of 11)	13128.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-104867740-4	chr14	104867638	104867838	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015593, intron 2 of 5)	intron (NR_015593, intron 2 of 5)	228591.0	NR_015593	320249.0	Mm.320725	NR_015593	ENSMUSG00000115432	D130009I18Rik	-	RIKEN cDNA D130009I18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-88492870-4	chr10	88492759	88492959	+	861.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144807, intron 1 of 7)	intron (NM_144807, intron 1 of 7)	11111.0	NR_027477	212862.0	Mm.288897	NM_144807	ENSMUSG00000060002	Chpt1	-	choline phosphotransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76296232-2	chr15	76296132	76296332	+	773.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_153122)	TTS (NM_153122)	1798.0	NM_001195537	100503915.0	Mm.393455	NM_001195537	ENSMUSG00000071724	Smpd5	Gm10345|MA-nSMase	sphingomyelin phosphodiesterase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-112186591-3	chr13	112186489	112186689	+	807.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-101862.0	NM_001168403	77318.0	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-77291269-4	chr10	77291171	77291371	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_004429, exon 11 of 11)	non-coding (NR_004429, exon 11 of 11)	31971.0	NM_030262	80294.0	Mm.203556	NM_030262	ENSMUSG00000020260	Pofut2	2310011G23Rik|AI256847|BC003494|C21orf80|FUT13	protein O-fucosyltransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-152447938-3	chr4	152447882	152448082	+	763.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010598, intron 1 of 15)	intron (NM_010598, intron 1 of 15)	873.0	NM_001252655	16498.0	Mm.388924	NM_010598	ENSMUSG00000028931	Kcnab2	F5|I2rf5|Kcnb3|kv-beta-2	potassium voltage-gated channel, shaker-related subfamily, beta member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-93425861-4	chr10	93425776	93425976	+	999.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7231.0	NR_106161	102465791.0		NR_106161	ENSMUSG00000098679	Mir7688	Gm27874|mmu-mir-7688	microRNA 7688	ncRNA	4.87814462043424	5.42596108204873	5.23753368347817	5.17241443869468	5.25177682356769	5.29019517483832	4.76618495887614	4.96026315417425	-0.118661838710252	0.70058887610983	0.998431161219273
Merged-chr12-16588858-4	chr12	16588764	16588964	+	906.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001130412, intron 1 of 20)	intron (NM_001130412, intron 1 of 20)	906.0	NM_015763	14245.0	Mm.153625	NM_015763	ENSMUSG00000020593	Lpin1	Lipin1|fld	lipin 1	protein-coding	3.19640602687635	2.7823961385909	3.0352673993382	3.21312999926941	3.22165866520584	2.80254519374761	3.05837162408497	3.22894360641064	0.0373798252289919	0.951202889974158	0.998431161219273
Merged-chr2-129307442-3	chr2	129307358	129307558	+	704.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040371, exon 5 of 5)	non-coding (NR_040371, exon 5 of 5)	2514.0	NM_010554	16175.0	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-10955235-2	chr16	10955135	10955335	+	809.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37886.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-30549022-4	chr13	30548915	30549115	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3699.0	NM_025710	66694.0	Mm.181933	NM_025710	ENSMUSG00000038462	Uqcrfs1	4430402G14Rik|AI875505	ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27319491-2	chr2	27319391	27319591	+	875.583374	f1_balb.idr|f1_c57bl6.idr	intron (NR_133905, intron 2 of 29)	intron (NR_133905, intron 2 of 29)	-72188.0	NM_138665	192166.0	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-90245825-4	chr11	90245742	90245942	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3634.0	NM_026178	67468.0	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26269115-2	chr17	26269015	26269215	+	803.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028190, intron 5 of 9)	B2_Mm2|SINE|B2	16205.0	NR_037905	66978.0	Mm.440216	NM_025881	ENSMUSG00000024188	Luc7l	1810045C04Rik|2410018D03Rik	Luc7-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-64045455-2	chr15	64045355	64045555	+	851.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360037, intron 1 of 11)	MTE2b|LTR|ERVL-MaLR	14309.0	NM_001360038	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-150392132-2	chr1	150392032	150392232	+	618.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133780)	promoter-TSS (NM_133780)	-706.0	NM_133780	108989.0	Mm.174256	NM_133780	ENSMUSG00000006005	Tpr	2610029M07Rik|C77892	translocated promoter region, nuclear basket protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-146806060-4	chr5	146805936	146806136	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11080.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118858661-3	chr9	118858532	118858732	+	697.3555299999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 9 of 13)	intron (NM_001113514, intron 9 of 13)	-67904.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-12041076-2	chr16	12040976	12041176	+	849.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028277, intron 2 of 4)	intron (NM_028277, intron 2 of 4)	56963.0	NM_001174086	72555.0	Mm.310139	NM_028277	ENSMUSG00000022494	Shisa9	2700045P11Rik|Ckamp44	shisa family member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-97850725-2	chr16	97850625	97850825	+	627.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359077, intron 1 of 23)	intron (NM_001359077, intron 1 of 23)	502.0	NM_144789	114604.0	Mm.328741	NM_144789	ENSMUSG00000014039	Prdm15	C21orf83|E130018M06Rik|ORF62|Zfp298	PR domain containing 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-65518034-4	chr3	65517933	65518133	+	961.908325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-10414.0	NM_178892	99929.0	Mm.246398	NM_178892	ENSMUSG00000034640	Tiparp	ARTD14|AW558171|PARP7	TCDD-inducible poly(ADP-ribose) polymerase	protein-coding	-0.486093302973885	-0.463302812346708	-0.470601096171843	-0.254978445634966	-0.484624408396681	-0.461679012367454	0.91705848392134	-0.475331461918535	3.31360382869161	0.175820092523247	1
Merged-chr1-161496415-5	chr1	161496358	161496558	+	776.58667	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183391, intron 1 of 2)	intron (NM_183391, intron 1 of 2)	1801.0	NM_183391	240873.0	Mm.276823	NM_183391	ENSMUSG00000066755	Tnfsf18	Gitrl|Tnlg2a	tumor necrosis factor (ligand) superfamily, member 18	protein-coding	2.35352562232846	2.26083507839485	1.60432493019679	3.48056001015775	2.8614509893142	2.55981386561221	1.61679383481981	1.78476427186212	-0.618192223574681	0.500725020725453	0.938130176835437
Merged-chr13-119616121-3	chr13	119616078	119616278	+	866.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7641.0	NM_020279	56838.0	Mm.143745	NM_020279	ENSMUSG00000074715	Ccl28	CCK1|MEC|Scya28	chemokine (C-C motif) ligand 28	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-4662572-4	chr13	4662472	4662672	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53408.0	NM_018859	56043.0	Mm.251908	NM_018859	ENSMUSG00000045410	Akr1e1	1810061I10Rik|Akr1e2	aldo-keto reductase family 1, member E1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70320788-2	chr11	70320688	70320888	+	684.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_145684, exon 6 of 14)	exon (NM_145684, exon 6 of 14)	1742.0	NM_145684	11685.0	Mm.274093	NM_145684	ENSMUSG00000018907	Alox12e	12-LOX|8-LOX|AW259591|Alox12-ps1|Alox12-ps2|Aloxe|e-LOX1	arachidonate lipoxygenase, epidermal	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-64341918-4	chr7	64341810	64342010	+	995.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	32185.0	NM_177893	330554.0	Mm.236510	NM_177893	ENSMUSG00000033458	Fan1	6030441H18Rik|Mtmr15|mFAN1	FANCD2/FANCI-associated nuclease 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80742974-2	chr10	80742874	80743074	+	770.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007460)	promoter-TSS (NM_007460)	-699.0	NM_007460	11776.0	Mm.27082	NM_007460	ENSMUSG00000020198	Ap3d1	AA407035|Ap3d|Bolvr|mBLVR1|mh|mocha	adaptor-related protein complex 3, delta 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34278868-1	chr17	34278768	34278968	+	599.0	f1_balb.idr	Intergenic	RMER19B|LTR|ERVK	8903.0	NM_010378	14960.0	Mm.235338	NM_010378	ENSMUSG00000036594	H2-Aa	Aalpha|H-2Aa|H2Aa|I-Aalpha|IAalpha|Ia-1|Ia1	histocompatibility 2, class II antigen A, alpha	protein-coding	1.85091336418452	2.20403338541597	1.38256449244303	1.12493808154323	2.14989910708815	2.328205079605	2.14333694431905	1.35603412778651	0.903957297087255	0.402184354495062	0.887644824805585
Merged-chr9-80164977-4	chr9	80164911	80165111	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039546)	promoter-TSS (NM_001039546)	-23.0	NM_001039546	17920.0	Mm.4040	NM_008662	ENSMUSG00000033577	Myo6	BC029719|Tlc|sv	myosin VI	protein-coding	3.66835599340639	3.94498081107573	3.76121306448321	3.81238486516136	1.53279399412332	2.46675337347156	1.39274891710372	1.33560664260724	-4.00361963082403	1.57398024567553e-06	9.53768433717927e-05
Merged-chr4-105152081-2	chr4	105151981	105152181	+	898.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5266.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-120394978-4	chr14	120394856	120395056	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360379, intron 5 of 6)	intron (NM_001360379, intron 5 of 6)	-83505.0	NM_029519	76108.0	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-23744510-2	chr13	23744458	23744658	+	927.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_175653)	TTS (NM_175653)	963.0	NM_175653	319148.0	Mm.262517	NM_175653	ENSMUSG00000069310	Hist1h3c	H3-143	histone cluster 1, H3c	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-66292228-2	chr7	66292128	66292328	+	640.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146191, intron 16 of 33)	intron (NM_146191, intron 16 of 33)	89496.0	NR_106024	102465640.0		NR_106024	ENSMUSG00000098353	Mir7057	Gm27550|mmu-mir-7057	microRNA 7057	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-113745585-4	chr9	113745480	113745680	+	855.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114347, intron 1 of 39)	intron (NM_001114347, intron 1 of 39)	4107.0	NM_001114347	76499.0	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-96222113-4	chr5	96221925	96222125	+	998.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039084, intron 2 of 6)	MLT1H|LTR|ERVL-MaLR	11910.0	NM_053158	94061.0	Mm.295499	NM_053158	ENSMUSG00000029486	Mrpl1	2410002L03Rik|5830418D04Rik|AI462572|L1mt	mitochondrial ribosomal protein L1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-128454936-3	chr8	128454811	128455011	+	609.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358959, intron 6 of 16)	intron (NM_001358959, intron 6 of 16)	95670.0	NR_035436	100316680.0		NR_035436	ENSMUSG00000084523	Mir1903	Mirn1903|mmu-mir-1903	microRNA 1903	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-70414917-4	chr16	70414821	70415021	+	623.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028803, intron 3 of 15)	MER34A|LTR|ERV1	100972.0	NM_028803	74185.0	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	-0.0524715382601177	-0.186611990397092	-0.191837991181626	0.121379729987266	-0.0481697683195968	0.672993359857912	-0.19068414100068	-0.195173104433151	1.54410646548726	0.485242209140197	1
Merged-chr11-120775661-2	chr11	120775561	120775761	+	571.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TC)n|Simple_repeat|Simple_repeat	8543.0	NM_009053	19719.0	Mm.871	NM_009053	ENSMUSG00000025158	Rfng	-	RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33749829-2	chr16	33749729	33749929	+	823.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175256, intron 10 of 14)	intron (NM_175256, intron 10 of 14)	-44208.0	NM_010739	17063.0	Mm.3177	NM_010739	ENSMUSG00000022824	Muc13	114/A10|14/A10|AI159736|Lrrp|Ly64|NJ-1	mucin 13, epithelial transmembrane	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-46747426-4	chr17	46747327	46747527	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001305988, exon 2 of 5)	exon (NM_001305988, exon 2 of 5)	4787.0	NM_001305989	72029.0	Mm.240325	NM_028065	ENSMUSG00000023973	Cnpy3	1600025D17Rik|2410050O22Rik|AI413153|CAG4A|ERDA5|PRAT4A|Tnrc5	canopy FGF signaling regulator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-10430825-4	chr14	10430724	10430924	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360141, intron 4 of 9)	intron (NM_001360141, intron 4 of 9)	22634.0	NM_001308286	14198.0	Mm.397619	NM_010210	ENSMUSG00000060579	Fhit	AW045638|Fra14A2	fragile histidine triad gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-30586810-2	chr12	30586710	30586910	+	565.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172049, intron 2 of 4)	intron (NM_172049, intron 2 of 4)	2367.0	NM_172049	211986.0	Mm.34035	NM_172049	ENSMUSG00000043061	Tmem18	BC024093	transmembrane protein 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-14004767-2	chr13	14004667	14004867	+	566.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178337, intron 12 of 16)	B2_Mm2|SINE|B2	34871.0	NR_130788	70430.0	Mm.260209	NM_178337	ENSMUSG00000039233	Tbce	2610206D02Rik|C530005D02Rik|pmn	tubulin-specific chaperone E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-132107205-4	chr2	132107130	132107330	+	984.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355430, intron 1 of 15)	intron (NM_001355430, intron 1 of 15)	37878.0	NM_001355431	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81320745-4	chr10	81320617	81320817	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027381)	promoter-TSS (NM_027381)	-386.0	NM_027381	70312.0	Mm.87628	NM_027381	ENSMUSG00000034889	Cactin	2510012J08Rik	cactin, spliceosome C complex subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133804619-4	chr4	133804514	133804714	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51003.0	NM_001080819	93760.0	Mm.22478	NM_001080819	ENSMUSG00000007880	Arid1a	1110030E03Rik|BAF250a|Osa1|Smarcf1	AT rich interactive domain 1A (SWI-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-77979412-2	chr11	77979312	77979512	+	643.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001291225)	TTS (NM_001291225)	-3404.0	NM_174852	268448.0	Mm.274329	NM_174852	ENSMUSG00000037791	Phf12	2410142K10Rik|F630045O13|PF1|mKIAA1523	PHD finger protein 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90575822-4	chr2	90575698	90575898	+	835.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	4849.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99094067-3	chr15	99093953	99094153	+	815.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5431.0	NM_176835	72778.0	Mm.30544	NM_176835	ENSMUSG00000038009	Dnajc22	2810451A06Rik|AI506245	DnaJ heat shock protein family (Hsp40) member C22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-98662633-4	chr2	98662528	98662728	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	SYNREP_MM|Satellite|Satellite	1194971.0	NM_178725	241568.0	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-146583687-3	chr3	146583579	146583779	+	684.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019957, intron 6 of 6)	intron (NM_019957, intron 6 of 6)	-13470.0	NM_009474	22262.0	Mm.10865	NM_009474	ENSMUSG00000028186	Uox	AI663847	urate oxidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-44383155-4	chr10	44383063	44383263	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23487.0	NR_035450	100316688.0		NR_035450	ENSMUSG00000089260	Mir1929	mir-1929|mmu-mir-1929	microRNA 1929	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80604831-2	chr10	80604731	80604931	+	567.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019575, intron 1 of 6)	intron (NM_019575, intron 1 of 6)	1949.0	NM_019575	56214.0	Mm.273170	NM_019575	ENSMUSG00000113949	Scamp4	2410022D05Rik|AI448940|AU022392|AW742369|Sc4	secretory carrier membrane protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-70202949-2	chr9	70202849	70203049	+	671.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-4401.0	NM_181072	71602.0	Mm.249311	NM_181072	ENSMUSG00000032220	Myo1e	2310020N23Rik|9130023P14Rik|AA407778|myosin-1e|myr 3	myosin IE	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-148083701-2	chr4	148083601	148083801	+	964.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_009642, intron 2 of 4)	intron (NM_009642, intron 2 of 4)	4363.0	NM_009642	11610.0	Mm.46247	NM_009642	ENSMUSG00000029007	Agtrap	3300002E14Rik|AT1R|Atrap|D4Wsu124e	angiotensin II, type I receptor-associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-25627418-4	chr8	25627315	25627515	+	663.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001735, intron 1 of 9)	B3|SINE|B2	-13162.0	NM_001081269	234135.0	Mm.217337	NM_001001735	ENSMUSG00000054823	Nsd3	6720429E03|A530023P05|AI528490|WHISTLE|Whsc1l1	nuclear receptor binding SET domain protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-95955897-4	chr16	95955794	95955994	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26817.0	NR_040484	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-74944250-4	chr5	74944154	74944354	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4940.0	NR_045866	619945.0	Mm.359372	NM_001037908	ENSMUSG00000072874	Gm6116	EG619945	predicted gene 6116	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129500921-4	chr4	129500821	129501021	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	9731.0	NM_001085491	68233.0	Mm.424983	NM_001085491	ENSMUSG00000078554	Fam229a	1700125D06Rik	family with sequence similarity 229, member A	protein-coding	6.52275629665741	6.55836235952526	6.77887001971321	5.72826905294127	6.41216448462737	6.71885942386828	6.27352655088967	6.46834139128206	0.0309713341663027	0.895291817287173	0.998431161219273
Merged-chr10-78464044-3	chr10	78463958	78464158	+	904.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172134, intron 1 of 10)	intron (NM_172134, intron 1 of 10)	890.0	NM_172134	216134.0	Mm.206159	NM_172134	ENSMUSG00000032788	Pdxk	2310036D04Rik|AA119688|C77999	pyridoxal (pyridoxine, vitamin B6) kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-86879770-2	chr9	86879670	86879870	+	906.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357770, intron 1 of 29)	CpG	679.0	NM_001277986	20616.0	Mm.281651	NM_013669	ENSMUSG00000033419	Snap91	91kDa|AP180|F1-20|mKIAA0656	synaptosomal-associated protein 91	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32152539-2	chr2	32152439	32152639	+	640.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172661, intron 1 of 29)	intron (NM_172661, intron 1 of 29)	1391.0	NM_001159634	227723.0	Mm.25504	NM_172661	ENSMUSG00000039262	Prrc2b	5830434P21Rik|AI173903|Bat2l|Bat2l1|D430039P21|mKIAA0515	proline-rich coiled-coil 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30587403-4	chr2	30587319	30587519	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7625.0	NM_030137	78617.0	Mm.40413	NM_030137	ENSMUSG00000047363	Cstad	9530039B02Rik	CSA-conditional, T cell activation-dependent protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-123373969-2	chr7	123373869	123374069	+	762.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A2-int|LTR|ERVL-MaLR	-4013.0	NM_025304	30949.0	Mm.260527	NM_025304	ENSMUSG00000030763	Lcmt1	AL033290|LCMT-1|Lcmt	leucine carboxyl methyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-111336045-2	chr10	111335945	111336145	+	620.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37366.0	NM_027914	71769.0	Mm.45256	NM_027914	ENSMUSG00000035759	Bbs10	1300007O09Rik|AI452285	Bardet-Biedl syndrome 10 (human)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102455879-4	chr12	102455771	102455971	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13263.0	NM_001199004	27277.0	Mm.273370	NM_013747	ENSMUSG00000021192	Golga5	Ret-II	golgi autoantigen, golgin subfamily a, 5	protein-coding	4.93654352934552	4.81675602690652	4.66785615089818	5.44841132495232	4.40506833535028	3.93982717614258	4.65391539686057	4.96529050050418	-0.559229463196039	0.13393736688964	0.571666672850202
Merged-chr15-86236427-3	chr15	86236328	86236528	+	849.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145476, intron 3 of 12)	intron (NM_145476, intron 3 of 12)	21969.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-22111590-3	chr3	22111500	22111700	+	629.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030732, intron 1 of 15)	intron (NM_030732, intron 1 of 15)	34948.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-109918972-2	chr10	109918872	109919072	+	755.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081035, intron 1 of 38)	Lx3A|LINE|L1	81247.0	NM_001081035	260315.0	Mm.225050	NM_177797	ENSMUSG00000020181	Nav3	4732483H20Rik|9630020C08Rik|POMFIL1|Pomfil1p|mKIAA0938|unc53H3	neuron navigator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80261213-4	chr7	80261124	80261324	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028053)	promoter-TSS (NR_028053)	9.0	NM_031375	83485.0	Mm.21175	NM_031375	ENSMUSG00000047084	Ngrn	AW552001	neugrin, neurite outgrowth associated	protein-coding	4.65407311268021	5.07730306850405	3.91122565596089	4.76684081484887	4.13439016701942	5.49760235345884	4.09484624184146	4.39032297860806	-0.00878273402576916	0.984092587249512	0.998431161219273
Merged-chr15-8706491-3	chr15	8706393	8706593	+	763.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_148938, intron 2 of 9)	intron (NM_148938, intron 2 of 9)	4314.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-14702823-4	chr14	14702736	14702936	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360516)	promoter-TSS (NM_001360516)	-189.0	NM_001360505	218756.0	Mm.258893	NM_001033270	ENSMUSG00000021733	Slc4a7	E430014N10Rik|NBC3|NBCn1|NBCn1-G|Tg(Thy1-SNCA)12Mjff	solute carrier family 4, sodium bicarbonate cotransporter, member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-94665421-4	chr9	94665321	94665521	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4471.0	NM_177909	331004.0	Mm.326125	NM_177909	ENSMUSG00000031129	Slc9a9	5730527A11Rik|9930105B05|AI854429|Nhe9	solute carrier family 9 (sodium/hydrogen exchanger), member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-172083286-2	chr1	172083142	172083342	+	695.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021607)	promoter-TSS (NM_021607)	-493.0	NM_021607	59287.0	Mm.218203	NM_021607	ENSMUSG00000003458	Ncstn	9430068N19Rik|AA727311|Aph2|D1Dau13e|Kiaa0253|Nct|mKIAA0253	nicastrin	protein-coding	0.281196172508582	-0.423919908796067	-0.428017817760387	-0.431178095018242	0.0485166479126916	-0.422995900842417	-0.427114167970174	-0.430626087670181	-0.7465883647168	0.784628556302681	1
Merged-chr3-95141639-4	chr3	95141538	95141738	+	944.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027206, intron 1 of 1)	intron (NM_027206, intron 1 of 1)	722.0	NM_027206	69769.0	Mm.34368	NM_027206	ENSMUSG00000013707	Tnfaip8l2	1810019A08Rik|AW610835|TIPE2	tumor necrosis factor, alpha-induced protein 8-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-33736936-3	chr2	33736831	33737031	+	916.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175184, intron 9 of 9)	intron (NM_175184, intron 9 of 9)	-68885.0	NR_045729	320482.0	Mm.442057	NR_045729	ENSMUSG00000086484	Nron	A630071L07Rik|Gm24353	non-protein coding RNA, repressor of NFAT	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-30153712-2	chr5	30153612	30153812	+	806.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178878, intron 1 of 19)	B1_Mus2|SINE|Alu	1268.0	NM_178878	97212.0	Mm.200497	NM_178878	ENSMUSG00000025745	Hadha	C77020|Mtpa	hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase (trifunctional protein), alpha subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-79355715-4	chr17	79355560	79355760	+	869.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026514)	promoter-TSS (NM_026514)	-569.0	NM_026514	260409.0	Mm.140601	NM_026514	ENSMUSG00000036533	Cdc42ep3	3200001F04Rik|AA986861|Borg2|Cep3|UB1	CDC42 effector protein (Rho GTPase binding) 3	protein-coding	0.591533682055052	0.280975430581061	1.46933792065879	0.260743944549318	0.247883742069833	0.283495032158811	0.272170159179519	1.3358469607531	-0.501028310052098	0.794281694238729	0.998431161219273
Merged-chr8-128452106-2	chr8	128451988	128452188	+	660.5	f0_balb.idr|f1_balb.idr	intron (NM_001358959, intron 6 of 16)	intron (NM_001358959, intron 6 of 16)	92847.0	NR_035436	100316680.0		NR_035436	ENSMUSG00000084523	Mir1903	Mirn1903|mmu-mir-1903	microRNA 1903	ncRNA	-1.22915060970067	-1.20283889872473	-1.21346133762366	-1.05883428008781	-1.22869714442646	-1.20053697190277	-0.753678471328647	-1.22062504920339	1.43421633794309	0.667093555748306	1
Merged-chr7-104300116-3	chr7	104300009	104300209	+	896.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_023835, exon 8 of 8)	3' UTR (NM_023835, exon 8 of 8)	-12003.0	NM_001310602	667823.0	Mm.482375	NM_001310602	ENSMUSG00000060441	Trim5	EG667823|Gm8833	tripartite motif-containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-72978926-1	chr3	72978826	72979026	+	621.0	f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	-11063.0	NM_001081137	69983.0	Mm.261054	NM_001081137	ENSMUSG00000027790	Sis	2010204N08Rik|SI|Si-s	sucrase isomaltase (alpha-glucosidase)	protein-coding	-0.51399767178481	-0.501584888852988	-0.505648341413942	-0.508785527015031	-0.513221998090704	0.0131907556822456	-0.504751852524804	0.143209092734739	3.5501717194251	0.188442266628931	1
Merged-chr16-31948435-6	chr16	31948304	31948504	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026554)	promoter-TSS (NM_026554)	117.0	NR_027897	106264.0	Mm.347369	NM_025320	ENSMUSG00000107002	0610012G03Rik	AI839730	RIKEN cDNA 0610012G03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-96821662-1	chr15	96821562	96821762	+	613.0	f0_balb.idr	Intergenic	L1M2|LINE|L1	-121934.0	NM_175121	67760.0	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81316289-2	chr10	81316189	81316389	+	964.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001293646, intron 17 of 18)	intron (NM_001293646, intron 17 of 18)	-4814.0	NM_027381	70312.0	Mm.87628	NM_027381	ENSMUSG00000034889	Cactin	2510012J08Rik	cactin, spliceosome C complex subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-110541884-4	chr13	110541785	110541985	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	146841.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	2.78946788909231	2.58746556742981	3.24788670788056	2.55107339339554	2.88880748968189	2.85328435845488	1.54595095907943	2.77485384864438	-0.386814452164551	0.620087234180631	0.978763712119577
Merged-chr4-129459221-2	chr4	129459121	129459321	+	559.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTRIS_Mus|LTR|ERV1	-2458.0	NM_133889	100383.0	Mm.17918	NM_133889	ENSMUSG00000040859	Bsdc1	1110063F24Rik|AW011758	BSD domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89317560-2	chr3	89317460	89317660	+	716.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010108, intron 1 of 4)	intron (NM_010108, intron 1 of 4)	5319.0	NM_010108	13638.0	Mm.331159	NM_010108	ENSMUSG00000028039	Efna3	AW494418|EFL-2|Ehk1-L|Epl3|LERK-3	ephrin A3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72538903-4	chr6	72538806	72539006	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5485.0	NM_007599	12332.0	Mm.18626	NM_007599	ENSMUSG00000056737	Capg	gCap39|mbh1	capping protein (actin filament), gelsolin-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-63975511-3	chr9	63975401	63975601	+	997.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008542, intron 3 of 3)	intron (NM_008542, intron 3 of 3)	46558.0	NM_008542	17130.0	Mm.325757	NM_008542	ENSMUSG00000036867	Smad6	Madh6|b2b390Clo	SMAD family member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-36934356-4	chr16	36934287	36934487	+	990.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008225)	promoter-TSS (NM_008225)	-596.0	NM_008225	15163.0	Mm.4091	NM_008225	ENSMUSG00000022831	Hcls1	AW213261|HS1	hematopoietic cell specific Lyn substrate 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-108448579-4	chr6	108448481	108448681	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 44 of 61)	intron (NM_010585, intron 44 of 61)	-41162.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	1.61082060854517	1.79453489032751	2.75971700956896	2.43978567087916	1.440681316517	1.80713410866702	2.43485546719771	2.45265416720401	-0.317409785573236	0.740194311362697	0.998431161219273
Merged-chr18-36696068-2	chr18	36695968	36696168	+	615.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172831)	promoter-TSS (NM_172831)	-143.0	NM_172831	240216.0	Mm.252323	NM_172831	ENSMUSG00000044719	E230025N22Rik	EG240216	Riken cDNA E230025N22 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-17590633-3	chr17	17590529	17590729	+	639.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172827, intron 1 of 17)	L1MEf|LINE|L1	33860.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	-0.508036668676473	-0.122523849723051	-0.499192778308045	-0.502512271480339	0.322658452673852	-0.493932961434261	-0.49824495934267	-0.501931919369981	1.61702770925099	0.557930632704994	1
Merged-chr2-120348324-4	chr2	120348206	120348406	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_147153, intron 2 of 25)	intron (NM_147153, intron 2 of 25)	4827.0	NR_027618	269338.0	Mm.246131	NM_147153	ENSMUSG00000027291	Vps39	A230065P22Rik|AW743070|Vam6|Vam6P|mVam6	VPS39 HOPS complex subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-97809525-4	chr7	97809430	97809630	+	891.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357364, intron 1 of 14)	MIRb|SINE|MIR	20989.0	NM_001357364	18479.0	Mm.260227	NM_011035	ENSMUSG00000030774	Pak1	AW045634|PAK-1|Paka	p21 (RAC1) activated kinase 1	protein-coding	-1.11230135623171	-1.22560689296436	-1.2356482609998	-1.2438965396774	-1.10868870050964	-1.22343088662251	-1.2333751153771	-0.947367750437762	1.22212627665719	0.696727276611405	1
Merged-chr1-106511845-4	chr1	106511753	106511953	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34778.0	NR_106164	102466254.0		NR_106164	ENSMUSG00000098344	Mir3473f	Gm27846|mmu-mir-3473f	microRNA 3473f	ncRNA	6.3054942145425	6.43841309315369	5.70309951676661	6.09677655629739	6.4536495904605	6.1877861578691	5.88835769429868	6.49064483482268	0.128475137038093	0.58987199148925	0.968992519410345
Merged-chr9-96196951-3	chr9	96196870	96197070	+	856.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178667, intron 1 of 13)	intron (NM_178667, intron 1 of 13)	695.0	NM_001184708	211586.0	Mm.17977	NM_178667	ENSMUSG00000032411	Tfdp2	1110029I05Rik|A330080J22Rik|DP-3|DP3	transcription factor Dp 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43760632-2	chr4	43760532	43760732	+	563.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8773.0	NR_040667	319973.0	Mm.233955	NR_040667		A630077J23Rik	-	RIKEN cDNA A630077J23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-5928003-4	chr15	5927891	5928091	+	999.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	116713.0	NR_155428	105245876.0	Mm.128197	NR_155428		Gm41259	-	predicted gene, 41259	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-64397598-3	chr17	64397488	64397688	+	822.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43218.0	NR_105848	102465228.0		NR_105848	ENSMUSG00000098984	Mir6420	Gm28007|mmu-mir-6420	microRNA 6420	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-60253781-2	chr10	60253681	60253881	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur2|LINE|L1	-23847.0	NM_001146123	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-8496883-17	chr12	8496806	8497006	+	933.397034	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_007483)	TTS (NM_007483)	3103.0	NM_007483	11852.0	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34101858-4	chr17	34101719	34101919	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-6510.0	NR_046183	414076.0	Mm.473092	NR_046183	ENSMUSG00000098197	BC051537	-	cDNA sequence BC051537	ncRNA	4.61745075196407	5.03389100783655	4.73503515588521	4.3501386689037	3.77753856261737	3.52800577232396	4.80773649364475	3.03994776474535	-0.966956994829532	0.0399762304355328	0.284818772426083
Merged-chr17-57220859-2	chr17	57220795	57220995	+	846.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_009778, intron 17 of 40)	intron (NM_009778, intron 17 of 40)	-3667.0	NR_105944	102465591.0		NR_105944	ENSMUSG00000099066	Mir6978	Gm27858|mmu-mir-6978	microRNA 6978	ncRNA	1.80633683961199	2.05318966343164	1.86343085987345	0.976527397633294	0.950905827044151	2.17702080157577	0.998960901365125	1.92533461037726	-0.268514634008955	0.834261744435303	0.998431161219273
Merged-chr19-36554082-3	chr19	36553993	36554193	+	795.1777950000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172637)	promoter-TSS (NM_172637)	-546.0	NM_001163471	226098.0	Mm.61107	NM_172637	ENSMUSG00000041180	Hectd2	4921524L07|A630025O09Rik|AW212605	HECT domain E3 ubiquitin protein ligase 2	protein-coding	-0.550539916529419	-0.792824917830277	-0.795575026535379	-0.642664764199733	-0.345811234565243	-0.790823552365772	-0.794969781381552	-0.797318158019547	0.367689884475952	0.897254663208075	1
Merged-chr8-117256579-4	chr8	117256450	117256650	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163262)	promoter-TSS (NM_001163262)	-469.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-120504859-4	chr1	120504769	120504969	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010766, exon 1 of 17)	5' UTR (NM_010766, exon 1 of 17)	155.0	NM_010766	17167.0	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-58680083-2	chr1	58679983	58680183	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347056, intron 3 of 13)	ORR1A4|LTR|ERVL-MaLR	12362.0	NM_001347056	108812.0	Mm.442063	NM_175370	ENSMUSG00000047528	Als2cr12	4933405P16Rik|4933425F06Rik	amyotrophic lateral sclerosis 2 chromosome region 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-100878854-3	chr12	100878758	100878958	+	981.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001177673, exon 3 of 3)	exon (NM_001177673, exon 3 of 3)	20666.0	NM_001177674	238377.0	Mm.32160	NM_175493	ENSMUSG00000047415	Gpr68	BB131428|Ogr1	G protein-coupled receptor 68	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59653899-3	chr15	59653762	59653962	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144549, intron 2 of 2)	intron (NM_144549, intron 2 of 2)	5208.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-63794293-1	chr9	63794193	63794393	+	676.0	f0_balb.idr	Intergenic	Intergenic	-36299.0	NM_016769	17127.0	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97853659-3	chr6	97853546	97853746	+	835.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113198, intron 1 of 9)	intron (NM_001113198, intron 1 of 9)	46588.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	1.33767636679092	0.922692825969835	0.906278885558326	1.53812062321394	1.66733346909313	2.08835678203381	1.31200029176112	1.41904061124868	1.6171766230142	0.198588920004831	0.682127729065762
Merged-chr12-86726441-4	chr12	86726339	86726539	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144524)	promoter-TSS (NM_144524)	21.0	NM_144524	68737.0	Mm.63979	NM_144524	ENSMUSG00000021257	Angel1	1110030H02Rik|mKIAA0759	angel homolog 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-93757779-1	chr1	93757679	93757879	+	576.0	f0_balb.idr	intron (NM_174874, intron 1 of 12)	Lx9|LINE|L1	2746.0	NM_174874	66615.0	Mm.29087	NM_174874	ENSMUSG00000026280	Atg4b	2510009N07Rik|AW048066|Apg4b|Atg4bl|Autl1	autophagy related 4B, cysteine peptidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97300930-1	chr6	97300830	97301030	+	549.0	f1_balb.idr	intron (NM_145148, intron 19 of 23)	intron (NM_145148, intron 19 of 23)	-48150.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	2.87562897001525	2.47380369272047	2.51139193229007	2.54666693144289	1.80938743415757	2.61616410671873	1.94649341475776	2.74377556960554	-0.583297776918179	0.468943478770175	0.924737467231384
Merged-chr6-39670671-1	chr6	39670571	39670771	+	550.0	f1_balb.idr	intron (NM_139294, intron 4 of 21)	MTD|LTR|ERVL-MaLR	54792.0	NM_139294	109880.0	Mm.245513	NM_139294	ENSMUSG00000002413	Braf	9930012E13Rik|AA120551|AA387315|AA473386|B-raf|Braf-2|Braf2|C230098H17|C87398|D6Ertd631e	Braf transforming gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126533899-2	chr8	126533799	126533999	+	621.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58834.0	NM_001159907	212728.0	Mm.482479	NM_001159907	ENSMUSG00000090290	Tarbp1	Gm17296|Gm179	TAR RNA binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59597606-2	chr15	59597506	59597706	+	632.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026746, intron 6 of 6)	B4|SINE|B4	-51048.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-28482999-2	chr6	28482899	28483099	+	632.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_019776, intron 1 of 23)	intron (NM_019776, intron 1 of 23)	2651.0	NM_019776	56463.0	Mm.439987	NM_019776	ENSMUSG00000001424	Snd1	AL033314|Tudor-SN	staphylococcal nuclease and tudor domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-69196885-2	chr17	69196785	69196985	+	772.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355736, intron 1 of 21)	RLTR34D_MM|LTR|ERVK	37529.0	NM_001355735	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-75696998-4	chr18	75696931	75697131	+	962.716675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201354, intron 1 of 11)	CpG	665.0	NM_201354	269037.0	Mm.36745	NM_201354	ENSMUSG00000052928	Ctif	Gm672	CBP80/20-dependent translation initiation factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-7987103-4	chr14	7987004	7987204	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007870, intron 2 of 7)	intron (NM_007870, intron 2 of 7)	7078.0	NM_007870	13421.0	Mm.272258	NM_007870	ENSMUSG00000025279	Dnase1l3	DNasegamma|Dhp2|Lsd	deoxyribonuclease 1-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-24600028-2	chr18	24599928	24600128	+	697.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_139143, intron 2 of 9)	intron (NM_139143, intron 2 of 9)	3789.0	NM_139143	106957.0	Mm.21688	NM_139143	ENSMUSG00000024270	Slc39a6	Ermelin|Zip6	solute carrier family 39 (metal ion transporter), member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-22041005-1	chr13	22040905	22041105	+	1000.0	f0_balb.idr	TTS (NM_175656)	TTS (NM_175656)	357.0	NM_175656	319158.0	Mm.14775	NM_175656	ENSMUSG00000060639	Hist1h4i	-	histone cluster 1, H4i	protein-coding	-0.0958208090739194	0.059181076444332	-0.565072664192988	-0.567975540756126	-0.572075612438898	-0.560459623560526	-0.564242597792743	-0.567468502081214	-3.41034332710449	0.216038135656497	1
Merged-chr8-4139732-1	chr8	4139632	4139832	+	560.0	f1_balb.idr	Intergenic	Lx5|LINE|L1	4996.0	NM_027343	70192.0	Mm.390006	NM_027343	ENSMUSG00000079168	Cd209g	2310066I10Rik|AI481039|SIGNR7	CD209g antigen	protein-coding	0.212834932198493	0.236925812468707	1.13866140442898	0.223020535717126	0.514238628597698	0.45338600180006	0.230832677599756	0.91362644818164	0.0821517421587167	0.965954965333274	1
Merged-chr8-34210151-2	chr8	34210051	34210251	+	654.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43439.0	NR_105820	102465211.0		NR_105820	ENSMUSG00000098785	Mir6395	Gm27561|mmu-mir-6395	microRNA 6395	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-33083608-4	chr12	33083516	33083716	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024478, intron 2 of 19)	intron (NM_001024478, intron 2 of 19)	9259.0	NM_001024478	68764.0	Mm.60083	NM_001024478	ENSMUSG00000035860	Cdhr3	1110049B09Rik|BB172694|Cdh28	cadherin-related family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100429328-3	chr7	100429247	100429447	+	917.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001017985, intron 20 of 32)	MER90|LTR|ERV1	-43644.0	NM_009464	22229.0	Mm.6254	NM_009464	ENSMUSG00000032942	Ucp3	AI645527|Slc25a9|UCP-3	uncoupling protein 3 (mitochondrial, proton carrier)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-17608124-2	chr1	17608024	17608224	+	602.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_053191, intron 2 of 5)	intron (NM_053191, intron 2 of 5)	6223.0	NM_053191	94227.0	Mm.442452	NM_053191	ENSMUSG00000067780	Pi15	P24TI|P25TI|PI-15|SugarCrisp	peptidase inhibitor 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-107189348-4	chr11	107189240	107189440	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161329)	promoter-TSS (NM_001161329)	41.0	NM_133702	68979.0	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55544604-4	chr19	55544514	55544714	+	936.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360431, intron 8 of 8)	L1MB8|LINE|L1	157590.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-105561003-4	chr4	105560900	105561100	+	910.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	403653.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	2.58470120597602	2.89204650615111	2.42503591498402	2.72059935018668	3.14572050920225	2.91277203019784	2.44349383276478	3.08793394649745	0.51655519102457	0.452855636651005	0.918756234638126
Merged-chr2-131206876-4	chr2	131206685	131206885	+	881.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3575.0	NM_001291032	69596.0	Mm.2937	NM_027129	ENSMUSG00000068264	Ap5s1	0610038L13Rik|2310035K24Rik|AW060727|sigma5	adaptor-related protein 5 complex, sigma 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-110711576-4	chr9	110711473	110711673	+	923.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_028312)	TTS (NM_028312)	31037.0	NM_001083936	19228.0	Mm.3542	NM_011199	ENSMUSG00000032492	Pth1r	PPR|Pthr|Pthr1	parathyroid hormone 1 receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-92637185-2	chr15	92637085	92637285	+	555.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164594, intron 1 of 7)	Lx9|LINE|L1	40076.0	NM_001164594	239618.0	Mm.309826	NM_001164593	ENSMUSG00000036218	Pdzrn4	1110017D07Rik|LNX4|SAMCAP3L|mKIAA3027	PDZ domain containing RING finger 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-23667433-2	chr11	23667333	23667533	+	560.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033654, intron 2 of 17)	intron (NM_001033654, intron 2 of 17)	1457.0	NM_028304	74467.0	Mm.29536	NM_028304	ENSMUSG00000020280	Pus10	2810013G11Rik|4933435A13Rik|AU014648|C77560|Ccdc139	pseudouridylate synthase 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191446067-2	chr1	191446010	191446210	+	610.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_151615, intron 2 of 5)	MTEb|LTR|ERVL-MaLR	18938.0	NR_151615	102634668.0		NR_151615		Gm32200	-	predicted gene, 32200	ncRNA	-1.20406370813143	-1.56956373024278	-1.57884638916872	-1.58647144159385	-1.598104728449	-1.56755213932999	-1.57674499865798	-1.58510656085539	-1.70745470802464	0.626337835847419	1
Merged-chr13-44181278-2	chr13	44181178	44181378	+	704.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35209.0	NR_045088	100503592.0	Mm.184925	NR_045088	ENSMUSG00000113186	A330076C08Rik	-	RIKEN cDNA A330076C08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-121872705-2	chr14	121872605	121872805	+	843.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5565.0	NR_131002	78312.0	Mm.188743	NR_130999	ENSMUSG00000102112	1810041H14Rik	-	RIKEN cDNA 1810041H14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171474443-3	chr1	171474315	171474515	+	650.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-29063.0	NM_019484	56009.0	Mm.389208	NM_019484	ENSMUSG00000060244	Alyref2	C130042O11Rik|REF2|Refbp2	Aly/REF export factor 2	protein-coding	0.358100442443576	0.815655640043557	0.381386348557503	0.372740214464638	0.360301895196073	0.631869706161967	1.29260730707783	1.48509487742114	2.99148889331467	0.103422053152306	0.500914100336688
Merged-chr1-165589360-4	chr1	165589271	165589471	+	829.299988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45170.0	NM_001001880	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-98082066-4	chr16	98081964	98082164	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015491, intron 1 of 4)	intron (NR_015491, intron 1 of 4)	375.0	NR_015491	320586.0	Mm.442230	NR_015491		A630089N07Rik	-	RIKEN cDNA A630089N07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-84991526-3	chr16	84991462	84991662	+	790.1904910000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198825, intron 12 of 15)	intron (NM_001198825, intron 12 of 15)	19351.0	NR_045889	100038614.0	Mm.441351	NR_045889	ENSMUSG00000115518	Gm10791	-	predicted gene 10791	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-68734548-1	chr8	68734448	68734648	+	846.0	f1_balb.idr	intron (NM_001252623, intron 1 of 10)	intron (NM_001252623, intron 1 of 10)	598.0	NM_001252623	234356.0	Mm.334569	NM_172753	ENSMUSG00000036356	Csgalnact1	4732435N03Rik|CSGalNAcT-1	chondroitin sulfate N-acetylgalactosaminyltransferase 1	protein-coding	1.14909384622246	0.867545732980029	1.39380185812952	1.94032239107418	1.29045871062013	1.29669056138741	1.76108395060035	0.842296786259695	-0.241124672683973	0.854926192612412	0.998431161219273
Merged-chr13-33072259-3	chr13	33072156	33072356	+	905.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11847.0	NM_173052	282663.0	Mm.314490	NM_173052	ENSMUSG00000051029	Serpinb1b	6330533H24Rik|EIB|Serpin1b1|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 1b	protein-coding	-0.821373581669352	-0.812787486826227	-0.504280954110067	-0.412157668002759	-0.682194736982173	-0.810120946503521	-0.815133471622323	-0.817495709925022	-2.01471946410918	0.47620942078565	1
Merged-chr8-88293989-7	chr8	88293851	88294051	+	973.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001037724)	promoter-TSS (NM_001037724)	-253.0	NM_001037724	11513.0	Mm.288206	NM_007406	ENSMUSG00000031659	Adcy7	AA407758	adenylate cyclase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19047346-2	chr7	19047246	19047446	+	842.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360713, intron 17 of 22)	intron (NM_001360713, intron 17 of 22)	-7341.0	NM_031255	83434.0	Mm.84435	NM_031255	ENSMUSG00000040866	Rsph6a	RSP4|Rshl1	radial spoke head 6 homolog A (Chlamydomonas)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-27551904-1	chr7	27551804	27552004	+	542.0	f1_c57bl6.idr	intron (NM_001317355, intron 1 of 13)	ID_B1|SINE|B4	1314.0	NM_011116	18807.0	Mm.6483	NM_011116	ENSMUSG00000003363	Pld3	Sam-9	phospholipase D family, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-64143392-4	chr9	64143323	64143523	+	814.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026507, intron 17 of 18)	MTE2a|LTR|ERVL-MaLR	26276.0	NM_145835	235435.0	Mm.436581	NM_145835	ENSMUSG00000032401	Lctl	E130104I05Rik|KLPH	lactase-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91736514-2	chr16	91736414	91736614	+	785.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110276, intron 1 of 15)	intron (NM_001110276, intron 1 of 15)	7143.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-160207559-2	chr2	160207459	160207659	+	830.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	119935.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-56147578-2	chr13	56147478	56147678	+	587.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1C|Other|Other	-12028.0	NM_001159513	26914.0	Mm.283802	NM_012015	ENSMUSG00000015937	H2afy	H2AF12M|mH2a1|macroH2A1	H2A histone family, member Y	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-138378396-2	chr7	138378296	138378496	+	674.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183289, intron 3 of 11)	intron (NM_183289, intron 3 of 11)	19334.0	NM_183289	70571.0	Mm.334297	NM_183289	ENSMUSG00000091002	Tcerg1l	5730476P14Rik	transcription elongation regulator 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-20772879-2	chr10	20772786	20772986	+	781.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47808.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	0.789799384281361	2.06398816972501	1.21580033515741	1.01280807463654	1.48537276067958	1.2693090836488	1.22556450105146	1.18724747483438	-0.326282770891396	0.799894729130845	0.998431161219273
Merged-chr1-170365890-4	chr1	170365834	170366034	+	835.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109985, intron 4 of 9)	MTD|LTR|ERVL-MaLR	57073.0	NM_001039593	76925.0	Mm.33631	NM_001039593	ENSMUSG00000042800	Spata46	1700015E13Rik	spermatogenesis associated 46	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141993769-3	chr4	141993648	141993848	+	998.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177868, intron 2 of 31)	intron (NM_177868, intron 2 of 31)	10756.0	NR_040672	545691.0	Mm.332015	NR_040672	ENSMUSG00000085424	Fhad1os1	Gm13037	forkhead-associated (FHA) phosphopeptide binding domain 1, opposite strand 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97150124-4	chr11	97150038	97150238	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198100)	promoter-TSS (NM_198100)	-426.0	NM_198100	73174.0	Mm.27882	NM_198100	ENSMUSG00000038517	Tbkbp1	3110043L15Rik|ProSAPiP2|SINTBAD	TBK1 binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-137599880-2	chr5	137599765	137599965	+	884.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001254762, intron 2 of 4)	intron (NM_001254762, intron 2 of 4)	843.0	NM_001254762	68929.0	Mm.41355	NM_030037	ENSMUSG00000037221	Mospd3	1190005J19Rik|5133401H10Rik|Gtig2|R124	motile sperm domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-39493286-4	chr1	39493186	39493386	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14531.0	NM_001357521	54610.0	Mm.387293	NM_018775	ENSMUSG00000003134	Tbc1d8	AD3|HBLP1|VRP	TBC1 domain family, member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-64899239-1	chr16	64899139	64899339	+	564.0	f0_balb.idr	Intergenic	Intergenic	47238.0	NM_178647	106143.0	Mm.10160	NM_178647	ENSMUSG00000054604	Cggbp1	AA960172|AL023996|AW045841	CGG triplet repeat binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-149710711-4	chr4	149710606	149710806	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9077.0	NM_001029837	18707.0	Mm.229108	NM_008840	ENSMUSG00000039936	Pik3cd	2410099E07Rik|2610208K16Rik|AW545373|p110delta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-68182832-2	chr7	68182732	68182932	+	577.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010513, intron 5 of 20)	intron (NM_010513, intron 5 of 20)	81401.0	NM_030101	78444.0	Mm.425468	NM_030101	ENSMUSG00000030553	Pgpep1l	C330024D12Rik	pyroglutamyl-peptidase I-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-26585571-1	chr11	26585471	26585671	+	575.333313	f0_balb.idr	intron (NM_027260, intron 2 of 12)	intron (NM_027260, intron 2 of 12)	8349.0	NM_027260	69922.0	Mm.285351	NM_027260	ENSMUSG00000064090	Vrk2	2810003O05Rik|AI447698	vaccinia related kinase 2	protein-coding	1.05144318452733	0.418265030575924	0.412541619045401	0.40815962056184	0.64951194682067	0.419561946805158	1.03637287708863	0.805863001813453	0.795195854988449	0.667741278372989	1
Merged-chr8-33656165-4	chr8	33656118	33656318	+	871.333374	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010344, intron 1 of 12)	B3|SINE|B2	2980.0	NM_010344	14782.0	Mm.283573	NM_010344	ENSMUSG00000031584	Gsr	AI325518|D8Ertd238e|Gr-1|Gr1	glutathione reductase	protein-coding	-0.85899884913904	-0.221460368678537	-0.852478112284837	-0.854929856228682	-0.579128496032964	-0.844249204911309	-0.851777156584519	-0.854501574186478	-1.3284213184086	0.662269550112928	1
Merged-chr16-4213316-4	chr16	4213159	4213359	+	998.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001025432, exon 1 of 31)	5' UTR (NM_001025432, exon 1 of 31)	145.0	NM_001025432	12914.0	Mm.132238	NM_001025432	ENSMUSG00000022521	Crebbp	AW558298|CBP|CBP/p300|KAT3A|p300/CBP	CREB binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-120917461-4	chr6	120917344	120917544	+	901.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007544)	promoter-TSS (NM_007544)	-620.0	NM_007544	12122.0	Mm.235081	NM_007544	ENSMUSG00000004446	Bid	2700049M22Rik|AI875481|AU022477	BH3 interacting domain death agonist	protein-coding	2.76055644949225	2.17604175617511	3.45633755122344	1.68714317952549	1.78293100571299	2.47780438575018	1.75454488321128	1.20565549533371	-1.75009387929527	0.0676629276607774	0.390265797169282
Merged-chr2-135166198-2	chr2	135166098	135166298	+	585.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145830, intron 3 of 31)	ORR1D1|LTR|ERVL-MaLR	49418.0	NR_040517	78805.0	Mm.78702	NR_040517	ENSMUSG00000085247	4930545L23Rik	-	RIKEN cDNA 4930545L23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-57854468-4	chr9	57854371	57854571	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20237.0	NM_019689	56380.0	Mm.425588	NM_019689	ENSMUSG00000004661	Arid3b	Bdp|Dri2	AT rich interactive domain 3B (BRIGHT-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-27259704-2	chr7	27259604	27259804	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010950, intron 1 of 9)	intron (NM_010950, intron 1 of 9)	943.0	NM_010950	18223.0	Mm.458153	NM_010950	ENSMUSG00000063160	Numbl	nbl	numb-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-52603284-7	chr12	52603193	52603393	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045910)	promoter-TSS (NR_045910)	-971.0	NR_045910	73278.0	Mm.396209	NR_045910	ENSMUSG00000100315	1700031P21Rik	-	RIKEN cDNA 1700031P21 gene	ncRNA	1.55730240279661	0.674808425519906	1.19889094384376	0.651461070127474	1.09888319062362	0.91072471503826	1.74442985130589	0.653265651660095	0.347673919909258	0.819510055634138	0.998431161219273
Merged-chr5-100498603-4	chr5	100498496	100498696	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001115010)	promoter-TSS (NM_001115010)	-23.0	NM_001115010	231506.0	Mm.212568	NM_172714	ENSMUSG00000035310	Lin54	AI461788	lin-54 homolog (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-144257273-2	chr5	144257173	144257373	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163709, intron 2 of 2)	intron (NM_001163709, intron 2 of 2)	2048.0	NM_018772	55950.0	Mm.38011	NM_018772	ENSMUSG00000047843	Bri3	I3	brain protein I3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135426404-2	chr5	135426304	135426504	+	544.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_146001, exon 23 of 31)	exon (NM_146001, exon 23 of 31)	-31858.0	NM_148932	107939.0	Mm.28399	NM_148932	ENSMUSG00000053293	Pom121	2610027A18Rik|C80273|mKIAA0618	nuclear pore membrane protein 121	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-131513496-2	chr6	131513379	131513579	+	580.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27073.0	NM_001347484	102638913.0		NM_001347484	ENSMUSG00000095577	LOC102638913	-	otolin-1-like	protein-coding	1.94378684842595	2.46048057448641	1.95776064347549	1.26970384461149	2.83468587546133	3.04019176784789	2.27004891755238	1.73563728500496	1.33745233817114	0.151586711886843	0.604901564041577
Merged-chr6-108733815-3	chr6	108733737	108733937	+	789.527771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49222.0	NM_026011	67166.0	Mm.271178	NM_026011	ENSMUSG00000030105	Arl8b	2610313E07Rik|3100002J04Rik|Arl10c|gie1	ADP-ribosylation factor-like 8B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-142712325-2	chr6	142712225	142712425	+	670.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur2|LINE|L1	-10051.0	NM_001310143	20928.0	Mm.35670	NM_011511	ENSMUSG00000030249	Abcc9	AI414027|AI449286|SUR2A|SUR2B|Sur2	ATP-binding cassette, sub-family C (CFTR/MRP), member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-143622118-2	chr1	143622018	143622218	+	621.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145991, intron 13 of 16)	intron (NM_145991, intron 13 of 16)	-18579.0	NM_020025	26878.0	Mm.285580	NM_020025	ENSMUSG00000033849	B3galt2	-	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-87688025-4	chr10	87687930	87688130	+	950.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	166235.0	NM_008777	18478.0	Mm.263539	NM_008777	ENSMUSG00000020051	Pah	AW106920	phenylalanine hydroxylase	protein-coding	3.52826404383909	4.06354749688539	3.60844857610799	4.17495577086173	3.11830215977098	3.05617648274446	2.27986023585824	3.44986506780375	-1.27108380003756	0.0252105106231467	0.210344719371707
Merged-chr6-39003159-2	chr6	39003059	39003259	+	725.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 5 of 12)	intron (NM_011539, intron 5 of 12)	64427.0	NR_040523	69986.0	Mm.490941	NR_040523	ENSMUSG00000100121	1700025N23Rik	-	RIKEN cDNA 1700025N23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-8667477-4	chr16	8667370	8667570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025821, intron 1 of 3)	intron (NM_025821, intron 1 of 3)	4683.0	NM_025821	52502.0	Mm.142095	NM_025821	ENSMUSG00000008393	Carhsp1	1200011K09Rik|Crhsp-24|D16Ertd465e	calcium regulated heat stable protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-17022512-2	chr7	17022412	17022612	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_011155, exon 2 of 13)	exon (NM_011155, exon 2 of 13)	5402.0	NM_011155	19060.0	Mm.3294	NM_011155	ENSMUSG00000003099	Ppp5c	AU020526|PP5	protein phosphatase 5, catalytic subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-19703429-3	chr8	19703375	19703575	+	961.238098	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-26101.0	NM_001270553	100861668.0	Mm.491087	NM_001270553	ENSMUSG00000095294	Gm21119	-	predicted gene, 21119	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-120277915-1	chr14	120277815	120278015	+	700.0	f0_balb.idr	intron (NM_001360380, intron 1 of 7)	intron (NM_001360380, intron 1 of 7)	2246.0	NM_001360380	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167643951-2	chr2	167643851	167644051	+	678.666687	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_145538, exon 6 of 6)	3' UTR (NM_145538, exon 6 of 6)	-11946.0	NM_023230	66589.0	Mm.278783	NM_023230	ENSMUSG00000078923	Ube2v1	0610011J09Rik|AI256840|CROC-1|CROC1|D7Bwg1382e|UEV-1	ubiquitin-conjugating enzyme E2 variant 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67090763-2	chr10	67090663	67090863	+	663.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178606, intron 1 of 7)	B3|SINE|B2	6225.0	NM_001204915	28193.0	Mm.41272	NM_178606	ENSMUSG00000019873	Reep3	D10Ucla1	receptor accessory protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-67905468-4	chr15	67905363	67905563	+	994.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	353393.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-14073981-4	chr2	14073845	14074045	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_038162)	promoter-TSS (NR_038162)	-11.0	NR_038162	70957.0	Mm.399049	NR_038162	ENSMUSG00000086657	Stamos	4921530L18Rik	signal transducing adaptor molecule (SH3 domain and ITAM motif) 1, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-99141488-1	chr9	99141388	99141588	+	901.0	f1_c57bl6.idr	Intergenic	Intergenic	-1277.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	0.269889951491983	0.863842629221596	0.289787726609162	1.19206640254459	0.271763506491134	0.301389278484144	0.291890495732981	1.20215943134333	-0.578402296885967	0.769498009412594	1
Merged-chr15-5414602-4	chr15	5414513	5414713	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-81705.0	NR_045274	71432.0	Mm.291087	NR_045274	ENSMUSG00000110018	5430437J10Rik	-	RIKEN cDNA 5430437J10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-78895134-2	chr7	78895034	78895234	+	959.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162939)	promoter-TSS (NM_001162939)	-793.0	NM_026531	68048.0	Mm.34109	NM_026531	ENSMUSG00000030609	Aen	2700083B06Rik|Isg20l1	apoptosis enhancing nuclease	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141156460-4	chr4	141156351	141156551	+	849.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172518, intron 1 of 9)	RSINE1|SINE|B4	8529.0	NM_172518	213499.0	Mm.28865	NM_172518	ENSMUSG00000028920	Fbxo42	6720460I06Rik|mKIAA1332	F-box protein 42	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116620518-2	chr11	116620418	116620618	+	992.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_172572, intron 1 of 18)	intron (NM_172572, intron 1 of 18)	3734.0	NM_001167680	217344.0	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141100046-3	chr7	141099886	141100086	+	861.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023059, intron 1 of 9)	CpG	560.0	NM_023059	24058.0	Mm.38017	NM_023059	ENSMUSG00000025494	Sigirr	AI256711|TIR8	single immunoglobulin and toll-interleukin 1 receptor (TIR) domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-84015427-4	chr6	84015334	84015534	+	983.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077694, intron 1 of 54)	intron (NM_001077694, intron 1 of 54)	-3952.0	NM_001310152	26903.0	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-95600033-2	chr8	95599933	95600133	+	663.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24426.0	NM_001310539	70993.0	Mm.486561	NM_027640	ENSMUSG00000048400	Prss54	4931432M23Rik|Klkbl4	protease, serine 54	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-74733566-2	chr14	74733466	74733666	+	765.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285423, intron 1 of 8)	intron (NM_001285423, intron 1 of 8)	1269.0	NM_016903	13885.0	Mm.38055	NM_016903	ENSMUSG00000021996	Esd	Es-10|Es10|FGH|sid478	esterase D/formylglutathione hydrolase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-99211690-4	chr10	99211616	99211816	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51515.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-88069970-4	chr6	88069893	88070093	+	993.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14480.0	NM_133933	103963.0	Mm.188544	NM_133933	ENSMUSG00000030062	Rpn1	AU018702|D6Wsu137e|Rpn-1	ribophorin I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167633137-1	chr2	167633037	167633237	+	605.0	f0_balb.idr	Intergenic	Intergenic	-1132.0	NM_023230	66589.0	Mm.278783	NM_023230	ENSMUSG00000078923	Ube2v1	0610011J09Rik|AI256840|CROC-1|CROC1|D7Bwg1382e|UEV-1	ubiquitin-conjugating enzyme E2 variant 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-38712346-4	chr6	38712250	38712450	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010433, intron 12 of 14)	MIRc|SINE|MIR	49281.0	NM_001101507	665180.0	Mm.349066	NM_001101507	ENSMUSG00000079598	Clec2l	AI414054|AW122724|Gm1064	C-type lectin domain family 2, member L	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-26689926-4	chr16	26689847	26690047	+	991.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152416, intron 4 of 12)	intron (NR_152416, intron 4 of 12)	65555.0	NR_105063	100504628.0	Mm.393275	NR_105063	ENSMUSG00000092545	Gm20319	-	predicted gene, 20319	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28671357-4	chr7	28671259	28671459	+	980.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-21490.0	NM_207238	233040.0	Mm.116116	NM_207238	ENSMUSG00000037463	Fbxo27	E130008B10Rik|FBG5|Gm161	F-box protein 27	protein-coding	3.11025305693	1.72703210227999	1.88507104599203	2.28314652472905	2.65242189084997	2.30745300806524	2.23158419871815	2.70306055368034	0.197353709078188	0.818019204046917	0.998431161219273
Merged-chr16-93913570-1	chr16	93913470	93913670	+	652.0	f0_c57.idr	Intergenic	Intergenic	15997.0	NM_001165925	56173.0	Mm.328716	NM_019500	ENSMUSG00000047109	Cldn14	AI851731	claudin 14	protein-coding	1.31635533093523	0.98221669010971	0.701364176202563	2.25228029666042	0.664909684745346	1.79255342030167	1.15664702810441	0.689171669729217	-0.946177862455066	0.513436512105677	0.94619324199876
Merged-chr14-17428022-4	chr14	17427901	17428101	+	951.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-232959.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-94355690-2	chr11	94355590	94355790	+	769.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029600, intron 25 of 30)	MER5A1|DNA|hAT-Charlie	27689.0	NM_146024	71452.0	Mm.141054	NM_027799	ENSMUSG00000020864	Ankrd40	1110011C06Rik|5530600A18Rik|Gcap15	ankyrin repeat domain 40	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-72162268-2	chr8	72162164	72162364	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023126, intron 1 of 7)	intron (NM_023126, intron 1 of 7)	1064.0	NM_023126	17274.0	Mm.162811	NM_023126	ENSMUSG00000003037	Rab8a	AA409338|Mel	RAB8A, member RAS oncogene family	protein-coding	2.61040332929846	2.67295243636118	2.58072734749568	2.18742488293341	1.24820317908733	1.35882743567149	2.2705657361443	2.60851421273614	-1.1476829949967	0.237982173096159	0.734516406999068
Merged-chr13-15850556-4	chr13	15850457	15850657	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155430, intron 3 of 3)	Arthur1|DNA|hAT-Tip100	43314.0	NR_046131	328190.0	Mm.446957	NR_046131	ENSMUSG00000113338	A530046M15Rik	A530046M15	RIKEN cDNA A530046M15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-20093542-2	chr13	20093491	20093691	+	698.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	3084.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	0.587324827149501	0.316173895554214	1.30533163775425	0.301134940870716	0.919475549968027	0.318069743940487	0.309588154147098	0.64251792464815	-0.694441360301798	0.707511379818614	1
Merged-chr7-110018718-1	chr7	110018618	110018818	+	1000.0	f0_balb.idr	intron (NM_181517, intron 1 of 24)	CpG	467.0	NM_001362172	233726.0	Mm.222328	NM_181517	ENSMUSG00000066232	Ipo7	A330055O14Rik|C330016G14|Imp7|Ranbp7	importin 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-146125021-4	chr6	146124911	146125111	+	960.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019923, intron 55 of 56)	intron (NM_019923, intron 55 of 56)	190889.0	NM_010656	16651.0	Mm.49689	NM_010656	ENSMUSG00000030255	Sspn	Krag	sarcospan	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-12174934-4	chr2	12174828	12175028	+	913.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001309, intron 22 of 29)	intron (NM_001001309, intron 22 of 29)	-126318.0	NR_040353	338535.0	Mm.483275	NR_040353	ENSMUSG00000086843	E030013I19Rik	-	RIKEN cDNA E030013I19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-100866215-4	chr9	100866117	100866317	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009282, intron 14 of 33)	intron (NM_009282, intron 14 of 33)	168667.0	NM_001311149	66904.0	Mm.335385	NM_025835	ENSMUSG00000032527	Pccb	1300012P06Rik|AI314687|R74805	propionyl Coenzyme A carboxylase, beta polypeptide	protein-coding	4.56565636210442	4.11170556140889	5.41405870233732	5.25820175971622	4.85225621714512	4.43723901578127	5.33396352600479	5.41454232300421	0.154829403956944	0.68647563748724	0.996533206832645
Merged-chr8-94787840-1	chr8	94787740	94787940	+	750.0	f1_c57bl6.idr	Intergenic	MLTR11A|LTR|ERVK	15660.0	NM_009142	20312.0	Mm.103711	NM_009142	ENSMUSG00000031778	Cx3cl1	AB030188|ABCD-3|AI848747|CX3C|Cxc3|D8Bwg0439e|Scyd1	chemokine (C-X3-C motif) ligand 1	protein-coding	0.83735486546496	0.303938717818528	0.857614581308085	0.71207868110333	0.285432930579028	0.305396958768356	0.298897264918607	0.718022133954941	-1.90957735072707	0.3224443046645	1
Merged-chr12-52049547-4	chr12	52049450	52049650	+	949.216675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21487.0	NM_008159	14762.0	Mm.12890	NM_008159	ENSMUSG00000035148	Gpr33	-	G protein-coupled receptor 33	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-21161367-4	chr13	21161273	21161473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18318.0	NM_146534	258527.0	Mm.271440	NM_146534	ENSMUSG00000045474	Olfr1368	MOR256-15	olfactory receptor 1368	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-127584598-2	chr5	127584498	127584698	+	587.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32794.0	NM_133895	100561.0	Mm.28506	NM_133895	ENSMUSG00000029416	Slc15a4	AA987064|AW742963|C130069N12Rik|PHT1|PTR4	solute carrier family 15, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71475448-4	chr17	71475348	71475548	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028887)	promoter-TSS (NM_028887)	-105.0	NM_028887	74355.0	Mm.194450	NM_028887	ENSMUSG00000024054	Smchd1	4931400A14Rik|AW554188|MommeD1|mKIAA0650	SMC hinge domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-179948992-4	chr2	179948900	179949100	+	894.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081092, intron 1 of 14)	intron (NM_001081092, intron 1 of 14)	27646.0	NM_001081092	228980.0	Mm.235542	NM_001081092	ENSMUSG00000039117	Taf4	135kDa|AI450312|TAFII130|TAFII135|Taf2c1|Taf4a	TATA-box binding protein associated factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19075249-2	chr7	19075149	19075349	+	973.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010058)	promoter-TSS (NM_010058)	-951.0	NM_010058	13401.0	Mm.2852	NM_010058	ENSMUSG00000030410	Dmwd	DMR-N9|Dm9	dystrophia myotonica-containing WD repeat motif	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-76614544-4	chr12	76614428	76614628	+	970.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013675, intron 15 of 35)	intron (NM_013675, intron 15 of 35)	-66603.0	NR_046044	100504549.0	Mm.440349	NR_046044	ENSMUSG00000112388	AI463170	-	expressed sequence AI463170	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-36490379-2	chr5	36490279	36490479	+	602.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001113364)	TTS (NM_001113364)	5791.0	NM_025725	66717.0	Mm.42368	NM_025725	ENSMUSG00000050677	Ccdc96	4921513E08Rik	coiled-coil domain containing 96	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-82139592-1	chr11	82139492	82139692	+	805.0	f0_balb.idr	Intergenic	Intergenic	24407.0	NM_021443	20307.0	Mm.42029	NM_021443	ENSMUSG00000009185	Ccl8	1810063B20Rik|AB023418|HC14|MCP-2|Mcp2|Scya8	chemokine (C-C motif) ligand 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-90438105-2	chr3	90438005	90438205	+	644.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-4469.0	NM_178876	229543.0	Mm.268564	NM_145540	ENSMUSG00000027933	Ints3	C77668	integrator complex subunit 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19669097-4	chr7	19669011	19669211	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4081.0	NM_019649	56457.0	Mm.290960	NM_019649	ENSMUSG00000002981	Clptm1	HS9|N14	cleft lip and palate associated transmembrane protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-104508488-4	chr5	104508413	104508613	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001166581, exon 1 of 2)	5' UTR (NM_001166581, exon 1 of 2)	161.0	NM_001166581	100042165.0	Mm.482189	NM_001166581	ENSMUSG00000079065	BC005561	-	cDNA sequence BC005561	protein-coding	4.21223471225106	3.16543213772638	3.67041179022358	3.2967072327339	3.62609566691615	4.12300411883234	4.71687762657275	3.9368788157754	0.689516097246086	0.175689766596087	0.645775639984829
Merged-chr4-86538147-3	chr4	86538062	86538262	+	921.2777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081096, intron 1 of 3)	B2_Mm2|SINE|B2	20141.0	NM_001081096	75811.0	Mm.56451	NM_001081096	ENSMUSG00000028492	Saxo1	4930500O09Rik|Fam154a	stabilizer of axonemal microtubules 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-23281715-2	chr16	23281615	23281815	+	793.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252505, intron 2 of 7)	intron (NM_001252505, intron 2 of 7)	-8755.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65655650-4	chr9	65655543	65655743	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028030, intron 6 of 7)	ID_B1|SINE|B4	-20905.0	NM_010952	18247.0	Mm.116749	NM_010952	ENSMUSG00000040652	Oaz2	AZ-2|AZ2|Oaz2-ps|Sez15	ornithine decarboxylase antizyme 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-84838861-4	chr1	84838758	84838958	+	978.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025386)	promoter-TSS (NM_025386)	446.0	NM_133975	14897.0	Mm.209265	NM_133975	ENSMUSG00000026219	Trip12	1110036I07Rik|6720416K24Rik|AA410158|Gtl6|TRIP-12	thyroid hormone receptor interactor 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10527952-1	chr19	10527852	10528052	+	917.0	f1_c57bl6.idr	intron (NM_172302, intron 2 of 9)	intron (NM_172302, intron 2 of 9)	2708.0	NM_172302	269061.0	Mm.490260	NM_172302	ENSMUSG00000034820	Cpsf7	5730453I16Rik|AL022757|C330017N18Rik	cleavage and polyadenylation specific factor 7	protein-coding	-1.21759957216335	-0.70430355617078	-1.20202188649919	-1.21090182969551	-1.06671509363092	-1.18886888879882	-1.19957466026017	-1.20931232410898	-1.51690879438767	0.646818360931408	1
Merged-chr10-118592821-4	chr10	118592725	118592925	+	798.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36300.0	NR_104123	103214.0	Mm.30529	NR_104123	ENSMUSG00000112230	Ifngas1	AI447422|Tmevpg1	Ifng antisense RNA 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-177463035-4	chr1	177462920	177463120	+	850.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1O|LTR|ERVL-MaLR	17199.0	NM_013915	30928.0	Mm.330700	NM_013915	ENSMUSG00000063659	Zbtb18	RP58|Zfp238|Znf238.|zfp-238	zinc finger and BTB domain containing 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-25189097-2	chr17	25188997	25189197	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290736, intron 1 of 14)	intron (NM_001290736, intron 1 of 14)	183.0	NM_001290736	74154.0	Mm.267353	NM_028789	ENSMUSG00000015127	Unkl	1300004G08Rik	unkempt family like zinc finger	protein-coding	0.0552940158539468	0.0713498297773982	0.381597246144974	0.0620177009683912	0.319231426668118	0.55766272092414	0.627207083093502	0.0627263932543915	2.19433512395434	0.298168615423304	1
Merged-chr8-13157933-2	chr8	13157833	13158033	+	590.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1228.0	NM_001317353	16783.0	Mm.16716	NM_010684	ENSMUSG00000031447	Lamp1	CD107a|LGP-120|LGP-A|Lamp-1|P2B|Perk	lysosomal-associated membrane protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-54824883-4	chr13	54824784	54824984	+	875.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35479.0	NM_028841	74257.0	Mm.32883	NM_028841	ENSMUSG00000025875	Tspan17	2210021G21Rik|AI047581|Fbxo23|Tm4sf17	tetraspanin 17	protein-coding	1.80311675099395	1.91276722651561	1.02488222594869	1.00173451481495	2.12523462674578	1.0599594222456	2.9079719242384	2.04295787257427	1.77264941664988	0.135024734451909	0.573799326075797
Merged-chr17-37525650-4	chr17	37525541	37525741	+	995.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4316.0	NM_001005485	545205.0	Mm.383371	NM_001005485	ENSMUSG00000090675	Olfr111	-	olfactory receptor 111	protein-coding	6.34902153245451	6.42824865582455	4.92648760269091	6.67334142401576	4.46343743290381	4.17577731590742	4.1826904634872	5.37145952828685	-1.79672232939137	2.37603696561737e-06	0.000134048706176225
Merged-chr18-89156907-2	chr18	89156807	89157007	+	570.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-40520.0	NM_178687	225825.0	Mm.139293	NM_178687	ENSMUSG00000034028	Cd226	BC051526|DNAM-1|DNAM1|Pta1|TLiSA1	CD226 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-120191527-2	chr9	120191427	120191627	+	980.3333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41785.0	NR_153959	17433.0	Mm.432562	NM_008614	ENSMUSG00000032517	Mobp	AI835053|AI839848|MOBP155|MOBP170|MOBP69|MOBP73|MOBP81|R74645	myelin-associated oligodendrocytic basic protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70527732-4	chr8	70527645	70527845	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199631)	promoter-TSS (NM_001199631)	2.0	NM_010223	14232.0	Mm.141864	NM_010223	ENSMUSG00000019428	Fkbp8	38kDa|FKBP-38|FKBP-8|FKBPR38|Fkbp38|mFKBP38	FK506 binding protein 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-130669257-4	chr7	130669154	130669354	+	872.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_206856, intron 3 of 20)	intron (NM_206856, intron 3 of 20)	-23302.0	NM_001347637	57752.0	Mm.86322	NM_021314	ENSMUSG00000030852	Tacc2	mKIAA4180	transforming, acidic coiled-coil containing protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-113772176-3	chr9	113772055	113772255	+	657.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114347, intron 5 of 39)	intron (NM_001114347, intron 5 of 39)	-21175.0	NM_001286603	76499.0	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-129344615-4	chr6	129344523	129344723	+	953.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5621.0	NM_177686	232413.0	Mm.90241	NM_177686	ENSMUSG00000053063	Clec12a	CLL-1|D230024O04|KLRL1|Micl	C-type lectin domain family 12, member a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-99226748-3	chr5	99226651	99226851	+	635.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181318, intron 10 of 13)	intron (NM_181318, intron 10 of 13)	26176.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-79977528-1	chr10	79977428	79977628	+	548.0	f1_balb.idr	TTS (NM_130455)	TTS (NM_130455)	6732.0	NM_001359632	216157.0	Mm.29442	NM_001003949	ENSMUSG00000013858	Tmem259	AC087114.7gm2|ORF61|R32184_3|mFLJ00277	transmembrane protein 259	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-130820099-2	chr4	130819999	130820199	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011520, intron 3 of 4)	intron (NM_011520, intron 3 of 4)	27562.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-26140537-4	chr2	26140409	26140609	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001256522)	promoter-TSS (NM_001256522)	-3.0	NM_001256521	109299.0	Mm.389259	NM_001256521		Tmem250-ps	AI551216|C330006A16Rik	transmembrane protein 250, pseudogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-36271330-5	chr17	36271275	36271475	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178281)	promoter-TSS (NM_178281)	56.0	NM_001357889	79263.0	Mm.40624	NM_024468	ENSMUSG00000045409	Trim39	1100001D15Rik|E130103K13Rik|RBCC-B30.2|Rnf23|mKIAA4179|tfp	tripartite motif-containing 39	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-20298303-4	chr14	20298205	20298405	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359869, intron 3 of 9)	intron (NM_001359869, intron 3 of 9)	3615.0	NR_153364	67725.0	Mm.317636	NM_026341	ENSMUSG00000021809	Nudt13	4933433B15Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-15262545-4	chr10	15262471	15262671	+	965.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVB2_1A-I_MM-int|LTR|ERVK	502282.0	NM_008703	18101.0	Mm.487342	NM_008703	ENSMUSG00000019865	Nmbr	BB182387	neuromedin B receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118418176-2	chr11	118418076	118418276	+	691.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029502, intron 1 of 4)	intron (NM_029502, intron 1 of 4)	942.0	NM_001025617	76025.0	Mm.177551	NM_029502	ENSMUSG00000025575	Cant1	5830420C20Rik|Apy1h|D11Bwg0554e|Entpd8|SCAN-1|Shapy	calcium activated nucleotidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-34390145-4	chr19	34390061	34390261	+	917.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER76|LTR|ERVL	84974.0	NM_009890	12642.0	Mm.30824	NM_009890	ENSMUSG00000050370	Ch25h	AI462618|m25OH	cholesterol 25-hydroxylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-146854514-1	chr2	146854414	146854614	+	570.0	f0_balb.idr	Intergenic	Intergenic	-1375.0	NM_001033298	228730.0	Mm.292352	NM_001033298	ENSMUSG00000074749	Kiz	Gm114|Ncrna00153|Plk1s1	kizuna centrosomal protein	protein-coding	2.41433893057943	1.92290876356515	1.60442768271606	1.7876008085791	2.19296262570216	3.40681888614931	4.00100752355995	2.17031532542083	2.29819494094969	0.00703018491766159	0.085315062685877
Merged-chr1-59247768-2	chr1	59247717	59247917	+	618.083374	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TCTTG)n|Simple_repeat|Simple_repeat	-9089.0	NM_001033373	271697.0	Mm.297713	NM_001033373	ENSMUSG00000026023	Cdk15	Als2cr7|Pftk2	cyclin-dependent kinase 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-95837370-3	chr11	95837257	95837457	+	869.285706	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163464, intron 1 of 7)	intron (NM_001163464, intron 1 of 7)	-4938.0	NM_023121	14710.0	Mm.46299	NM_023121	ENSMUSG00000038811	Gngt2	AV096488	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-65726981-4	chr17	65726884	65727084	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133685, intron 1 of 6)	MIR3|SINE|MIR	45768.0	NM_133685	106572.0	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46618525-4	chr19	46618437	46618637	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177812, intron 2 of 4)	intron (NM_001177812, intron 2 of 4)	-4864.0	NM_001177813	226178.0	Mm.329895	NM_146099	ENSMUSG00000047731	Wbp1l	D19Wsu162e|Opal1	WW domain binding protein 1 like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-86838768-2	chr12	86838668	86838868	+	727.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46046.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70554069-3	chr8	70553961	70554161	+	777.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007924, intron 1 of 11)	intron (NM_007924, intron 1 of 11)	14386.0	NM_007924	13716.0	Mm.271973	NM_007924	ENSMUSG00000070002	Ell	Ell1|Men	elongation factor RNA polymerase II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-73571222-2	chr18	73571122	73571322	+	783.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-1483.0	NM_001039214	240396.0	Mm.24131	NM_001039214	ENSMUSG00000037253	Mex3c	A130001D14Rik|BC035207|BM-013|Rkhd2	mex3 RNA binding family member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-148900503-3	chr2	148900413	148900613	+	913.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25001.0	NM_009976	13010.0	Mm.4263	NM_009976	ENSMUSG00000027447	Cst3	CysC	cystatin C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-22743700-4	chr10	22743594	22743794	+	954.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12247.0	NM_011603	237336.0	Mm.86670	NM_011603	ENSMUSG00000071359	Tbpl1	4732475G08|AW011832|AW491032|D18347|STD|TLF|TRF2|TRP|Tlp	TATA box binding protein-like 1	protein-coding	1.98452274144883	2.56316229597473	3.01171741199653	2.25875275263983	2.79708261022728	1.52446087559642	3.27029644221464	3.47451770121911	0.833976864704383	0.311998984932111	0.813656822463875
Merged-chr5-3195620-4	chr5	3195510	3195710	+	763.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-148283.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81934172-4	chr15	81934072	81934272	+	924.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2587.0	NM_145473	105859.0	Mm.22524	NM_145473	ENSMUSG00000042109	Csdc2	AI415250|AI481750|Pippin	cold shock domain containing C2, RNA binding	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-64152440-4	chr13	64152347	64152547	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361047)	promoter-TSS (NM_001361047)	-74.0	NM_001361047	238673.0	Mm.300065	NM_175494	ENSMUSG00000044934	Zfp367	8030486J21Rik|ZFF29a|ZFF29b|Znf367	zinc finger protein 367	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-119894978-2	chr7	119894878	119895078	+	576.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285959)	promoter-TSS (NM_001285959)	480.0	NM_173408	233805.0	Mm.31539	NM_173408	ENSMUSG00000048787	Dcun1d3	1700020A13Rik|BC030335	DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-78135244-4	chr10	78135125	78135325	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34543.0	NM_138601	28295.0	Mm.268691	NM_138601	ENSMUSG00000053329	D10Jhu81e	C21orf33|ES1	DNA segment, Chr 10, Johns Hopkins University 81 expressed	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-77606579-4	chr10	77606469	77606669	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001301671)	promoter-TSS (NM_001301671)	-29.0	NM_001301671	20610.0	Mm.24433	NM_019929	ENSMUSG00000020265	Sumo3	2810014B19Rik|D10Ertd345e|SMT3A|SUMO-3|Smt3h1	small ubiquitin-like modifier 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-69777179-2	chr8	69777097	69777297	+	630.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13B|LTR|ERVK	-2286.0	NM_177899	330788.0	Mm.41364	NM_177899	ENSMUSG00000043090	Zfp866	9830167H18Rik|AI875089|C85843|D330038O06Rik	zinc finger protein 866	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-21679437-4	chr17	21679334	21679534	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001354753)	promoter-TSS (NM_001354753)	-443.0	NM_001354753	100310809.0	Mm.293030	NM_001354753		Gm10509	-	predicted gene 10509	protein-coding	0.974069341191447	1.22703798723384	1.44236154716856	1.28594076871554	0.979455726483495	1.23567610814094	1.45458617488698	1.29257089336025	0.0371861777092026	0.976155397288348	0.998431161219273
Merged-chr6-134072577-4	chr6	134072487	134072687	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 2 of 8)	intron (NM_001303102, intron 2 of 8)	36887.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	4.04419837168034	4.27097741639235	4.41488058194295	3.95987748359008	4.07601934238112	4.6339691406432	4.03311763759581	4.50628154290402	0.203767310717292	0.620850945971044	0.979324117529246
Merged-chr7-145293426-4	chr7	145293340	145293540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-7469.0	NM_145379	211577.0	Mm.215151	NM_145379	ENSMUSG00000031070	Mrgprf	BC019711|Mgrc|MrgF	MAS-related GPR, member F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5366589-5	chr19	5366530	5366730	+	994.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027236)	promoter-TSS (NM_027236)	-183.0	NM_027236	69860.0	Mm.299167	NM_027236	ENSMUSG00000024841	Eif1ad	2010003J03Rik|AI131644	eukaryotic translation initiation factor 1A domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-79757900-3	chr2	79757814	79758014	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290743, intron 3 of 4)	intron (NM_001290743, intron 3 of 4)	50134.0	NM_001290743	75276.0	Mm.257373	NM_172420	ENSMUSG00000034683	Ppp1r1c	4930565M23Rik|4930579P15Rik	protein phosphatase 1, regulatory (inhibitor) subunit 1C	protein-coding	1.31677169565447	1.26753733441682	0.719502198696499	0.710614743075477	1.32964610013153	1.40976894321639	0.722027333132767	1.30500031995401	0.766324833000462	0.608355916972914	0.974576632476413
Merged-chr7-25297513-4	chr7	25297310	25297510	+	977.40625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008776, exon 2 of 6)	exon (NM_008776, exon 2 of 6)	545.0	NM_008776	18476.0	Mm.597	NM_008776	ENSMUSG00000005447	Pafah1b3	Pafahg|mus[g]	platelet-activating factor acetylhydrolase, isoform 1b, subunit 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83640363-4	chr11	83640249	83640449	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9029.0	NM_011337	20302.0	Mm.1282	NM_011337	ENSMUSG00000000982	Ccl3	AI323804|G0S19-1|LD78alpha|MIP-1alpha|MIP1-(a)|MIP1-alpha|Mip1a|Scya3	chemokine (C-C motif) ligand 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-107884515-2	chr13	107884415	107884615	+	797.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 2 of 14)	ID4|SINE|ID	5549.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-8883299-3	chr17	8883205	8883405	+	855.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347321, intron 1 of 21)	intron (NM_001347321, intron 1 of 21)	33320.0	NM_001347321	23984.0	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105481602-2	chr8	105481502	105481702	+	802.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175160, intron 5 of 13)	intron (NM_175160, intron 5 of 13)	2825.0	NM_001357252	70796.0	Mm.100917	NM_175160	ENSMUSG00000039199	Zdhhc1	4432412D04Rik|DHHC-1	zinc finger, DHHC domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-54306245-4	chr13	54306155	54306355	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65094.0	NM_009946	12890.0	Mm.268902	NM_009946	ENSMUSG00000025867	Cplx2	921-L|AI413745|AW492120|Gm34843	complexin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-35757144-3	chr5	35757056	35757256	+	945.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177696)	promoter-TSS (NM_001177696)	-724.0	NM_001177697	231148.0	Mm.254446	NM_177678	ENSMUSG00000029095	Ablim2	AI606905|C230091L11	actin-binding LIM protein 2	protein-coding	3.36733303073882	2.59136225208956	2.13608423076382	2.69935923189534	2.79227344075525	3.65239365463269	3.78228143763783	3.03562727344655	0.993900103881257	0.140962999639803	0.585756431428663
Merged-chr5-140651388-2	chr5	140651288	140651488	+	699.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2357.0	NM_175274	78339.0	Mm.28947	NM_175274	ENSMUSG00000036565	Ttyh3	2900029G13Rik|AI414930|TTY3|mTTY3	tweety family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-164862614-4	chr2	164862505	164862705	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4897.0	NM_011125	18830.0	Mm.6105	NM_011125	ENSMUSG00000017754	Pltp	Bpife|OD107	phospholipid transfer protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-61505889-2	chr11	61505789	61505989	+	607.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001330780, intron 1 of 5)	intron (NM_001330780, intron 1 of 5)	745.0	NM_001330781	27078.0	Mm.261226	NM_013717	ENSMUSG00000001039	B9d1	AW045994|B9|Eppb9	B9 protein domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-73805474-2	chr13	73805374	73805574	+	629.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_011390, exon 18 of 24)	exon (NM_011390, exon 18 of 24)	41777.0	NM_011390	20499.0	Mm.275800	NM_011390	ENSMUSG00000017756	Slc12a7	AA408796|D13Ertd261e|Kcc4	solute carrier family 12, member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84554561-2	chr8	84554522	84554722	+	766.5	f0_balb.idr|f1_balb.idr	intron (NM_001252060, intron 17 of 47)	intron (NM_001252060, intron 17 of 47)	108230.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-47063957-4	chr11	47063858	47064058	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011891, intron 6 of 7)	intron (NM_011891, intron 6 of 7)	253159.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	4.79558303099168	5.83934110457881	5.65481295848145	5.746858677362	4.83205616691294	4.93837873511363	5.22906761149905	5.18604386722693	-0.581692842317426	0.0664948543303874	0.386885656023691
Merged-chr11-50224616-4	chr11	50224505	50224705	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145926)	promoter-TSS (NM_145926)	-730.0	NM_145926	103534.0	Mm.86759	NM_145926	ENSMUSG00000036620	Mgat4b	AA407995|GnTIVb	mannoside acetylglucosaminyltransferase 4, isoenzyme B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167389523-2	chr2	167389423	167389623	+	694.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-32187.0	NM_148929	77031.0	Mm.278924	NM_148929	ENSMUSG00000039463	Slc9a8	1200006P13Rik|6430709P13Rik|AI182282|NHE-8|NHE8	solute carrier family 9 (sodium/hydrogen exchanger), member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-92478479-4	chr2	92478376	92478576	+	995.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME1|LINE|L1	-17958.0	NM_145832	228368.0	Mm.273990	NM_145832	ENSMUSG00000049922	Slc35c1	E430007K15Rik|fuct1	solute carrier family 35, member C1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-125388765-7	chr10	125388668	125388868	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59805.0	NM_001358496	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-94506791-2	chr6	94506691	94506891	+	735.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026255, intron 1 of 9)	intron (NM_026255, intron 1 of 9)	6477.0	NM_026255	67582.0	Mm.280725	NM_026255	ENSMUSG00000045100	Slc25a26	4930433D19Rik|4933433F13Rik|AW557176|D6Bwg0781e|Slc25a6	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-14985439-4	chr14	14985343	14985543	+	885.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195229, intron 30 of 34)	intron (NM_001195229, intron 30 of 34)	164628.0	NM_001195229	674895.0	Mm.317563	NM_001034865	ENSMUSG00000042567	Nek10	Gm282	NIMA (never in mitosis gene a)- related kinase 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-23440003-1	chr5	23439903	23440103	+	580.0	f0_balb.idr	intron (NM_026984, intron 1 of 25)	intron (NM_026984, intron 1 of 25)	5574.0	NM_026984	69188.0	Mm.205190	NM_026984	ENSMUSG00000029004	Kmt2e	1810033J14Rik|9530077A04Rik|D230038D11Rik|Mll5|NKp44L	lysine (K)-specific methyltransferase 2E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-33213496-2	chr18	33213384	33213584	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_001347624, intron 1 of 5)	intron (NM_001347624, intron 1 of 5)	378.0	NM_133774	170459.0	Mm.127058	NM_133774	ENSMUSG00000024378	Stard4	4632419C16Rik|9030213J02Rik	StAR-related lipid transfer (START) domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166731564-2	chr2	166731464	166731664	+	691.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A2|LTR|ERVL-MaLR	-17732.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-146675388-4	chr5	146675282	146675482	+	913.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-90143.0	NM_001359057	14738.0	Mm.153539	NM_008151	ENSMUSG00000041468	Gpr12	Gpcr01|Gpcr12|Gpcr20|Gpcr21	G-protein coupled receptor 12	protein-coding	3.6500034032292	3.60299054338047	3.01895189404594	3.31231573079842	3.17070807274826	3.77751396939731	2.64031430198782	3.24446513785415	-0.248654707528453	0.671425764611543	0.994059363767912
Merged-chr11-100570653-4	chr11	100570544	100570744	+	949.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028918, intron 11 of 11)	intron (NM_028918, intron 11 of 11)	-4295.0	NM_009923	12799.0	Mm.15711	NM_009923	ENSMUSG00000006782	Cnp	CNPase|Cnp-1|Cnp1	2',3'-cyclic nucleotide 3' phosphodiesterase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-105252864-3	chr4	105252761	105252961	+	761.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	95514.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	1.05351287619174	1.65148737914446	0.852003372245482	1.23692535403318	0.799348653596714	1.06502352652176	0.656359498537742	0.834220599068994	-1.90159758032443	0.18102659462114	0.653941313407598
Merged-chr10-60705382-4	chr10	60705306	60705506	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8916.0	NM_023370	22295.0	Mm.440327	NM_023370	ENSMUSG00000012819	Cdh23	4930542A03Rik|USH1D|ahl|ahl1|bob|bus|mdfw|nmf112|nmf181|nmf252|sals|v	cadherin 23 (otocadherin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-7505864-2	chr19	7505764	7505964	+	736.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146091, intron 1 of 12)	intron (NM_146091, intron 1 of 12)	11426.0	NM_146091	109168.0	Mm.264016	NM_146091	ENSMUSG00000024759	Atl3	4633402C03Rik|5730596K20Rik|AI465397|AW228836	atlastin GTPase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-66513438-2	chr9	66513338	66513538	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175206, intron 1 of 1)	intron (NM_175206, intron 1 of 1)	1155.0	NM_175206	74165.0	Mm.297998	NM_175206	ENSMUSG00000050503	Fbxl22	1110004B15Rik	F-box and leucine-rich repeat protein 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-98004435-2	chr15	98004335	98004535	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_031163, exon 1 of 54)	exon (NM_031163, exon 1 of 54)	289.0	NM_031163	12824.0	Mm.2423	NM_031163	ENSMUSG00000022483	Col2a1	Col2|Col2a|Col2a-1|Del1|Dmm|Lpk|Rgsc856	collagen, type II, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-48320348-3	chr17	48320204	48320404	+	842.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177083, intron 3 of 5)	intron (NM_177083, intron 3 of 5)	4142.0	NM_177083	320148.0	Mm.123455	NM_177083	ENSMUSG00000043740	B430306N03Rik	Treml6	RIKEN cDNA B430306N03 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126695065-4	chr8	126694986	126695186	+	814.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-101650.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	1.04044275620652	1.3220850663668	1.15641813916204	1.11373994476827	0.692246051159304	0.562842083451728	0.553460974253669	0.545406349558177	-3.79806907792316	0.0214413544197039	1
Merged-chr18-64490707-2	chr18	64490607	64490807	+	652.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1609.0	NM_001348055	14151.0	Mm.1070	NM_007998	ENSMUSG00000024588	Fech	AI894116|Fcl|fch	ferrochelatase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-60499395-2	chr3	60499295	60499495	+	714.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253713, intron 2 of 9)	intron (NM_001253713, intron 2 of 9)	-1784.0	NM_001253710	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-103483906-2	chr14	103483806	103484006	+	632.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-29435.0	NM_022886	64929.0	Mm.244003	NM_022886	ENSMUSG00000022123	Scel	9230114I02Rik	sciellin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-32556929-2	chr4	32556829	32557029	+	734.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001109661, intron 2 of 4)	RMER15|LTR|ERVL	14733.0	NR_026843	414068.0	Mm.389550	NR_026843	ENSMUSG00000086150	Bach2os	-	BTB and CNC homology 2, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-29501633-3	chr19	29501561	29501761	+	749.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20326.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80134329-2	chr10	80134229	80134429	+	821.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_036582, intron 9 of 10)	intron (NR_036582, intron 9 of 10)	3058.0	NM_001195268	100503659.0	Mm.485395	NM_015761	ENSMUSG00000035640	Cbarp	9630008F14|Dos|R29144/1	calcium channel, voltage-dependent, beta subunit associated regulatory protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-3029453-1	chr9	3029353	3029553	+	1000.0	f0_c57.idr	Intergenic	GSAT_MM|Satellite|Satellite	9290.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-12375099-2	chr15	12374999	12375199	+	876.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081064, exon 19 of 24)	exon (NM_001081064, exon 19 of 24)	53603.0	NM_025673	66629.0	Mm.157655	NM_025673	ENSMUSG00000022200	Golph3	4733401N08Rik|5730410D03Rik|AW413496	golgi phosphoprotein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120352109-2	chr11	120352009	120352209	+	970.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_038126)	TTS (NR_038126)	3431.0	NR_038126	66838.0	Mm.375010	NR_038126	ENSMUSG00000043644	0610009L18Rik	-	RIKEN cDNA 0610009L18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-86695211-4	chr4	86695062	86695262	+	838.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25103.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-52284456-2	chr11	52284356	52284556	+	790.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1442.0	NM_001313981	21414.0	Mm.31630	NM_009331	ENSMUSG00000000782	Tcf7	AI465550|TCF-1|Tcf1	transcription factor 7, T cell specific	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-113221379-2	chr5	113221279	113221479	+	967.083374	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-5530.0	NM_001033428	333048.0	Mm.332586	NM_001033428	ENSMUSG00000066964	Tmem211	Gm854	transmembrane protein 211	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-80007252-1	chr15	80007152	80007352	+	620.0	f0_balb.idr	intron (NM_011057, intron 1 of 6)	MTD|LTR|ERVL-MaLR	7556.0	NM_011057	18591.0	Mm.144089	NM_011057	ENSMUSG00000000489	Pdgfb	PDGF-B|Sis	platelet derived growth factor, B polypeptide	protein-coding	0.866736474048813	0.912273439072514	1.66324908639	1.70959325449413	1.32124199544815	1.32791763789368	1.67773762401297	1.38832983180393	0.267773532122172	0.836804374034333	0.998431161219273
Merged-chr17-7919155-2	chr17	7919055	7919255	+	808.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-6845.0	NM_145968	72536.0	Mm.119680	NM_145968	ENSMUSG00000033450	Tagap	2610315E15Rik|TRD|Tcd-1|Tcd1|Tcd1a|tcs-1|tcs1	T cell activation Rho GTPase activating protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-17281727-4	chr6	17281593	17281793	+	947.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016900, intron 1 of 2)	intron (NM_016900, intron 1 of 2)	508.0	NM_016900	12390.0	Mm.396075	NM_016900	ENSMUSG00000000058	Cav2	AI447843	caveolin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-118490359-4	chr2	118490252	118490452	+	892.883301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10656.0	NM_009273	20813.0	Mm.363404	NM_009273	ENSMUSG00000009549	Srp14	14kDa|AW536328	signal recognition particle 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-40877813-2	chr9	40877801	40878001	+	775.166687	f1_balb.idr|f1_c57bl6.idr	TTS (NM_178245)	TTS (NM_178245)	3774.0	NM_178245	244813.0	Mm.261652	NM_178245	ENSMUSG00000054360	Bsx	Bsx1a|Bsx1b	brain specific homeobox	protein-coding	-0.391540557385216	-0.551116623760415	-0.735338088654689	-0.737486607048537	-0.383677526578036	-0.7319046940708	-0.734722012906535	-0.737112004783417	-0.504301507439974	0.857945703625103	1
Merged-chr17-25272116-2	chr17	25272021	25272221	+	604.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011665, intron 1 of 6)	PB1D7|SINE|Alu	1310.0	NM_001177610	22196.0	Mm.240044	NM_011665	ENSMUSG00000015120	Ube2i	5830467E05Rik|UBC9|Ubce2i|Ubce9	ubiquitin-conjugating enzyme E2I	protein-coding	0.0655695325236689	-0.278751218111401	-0.282749631692464	-0.285823856221337	-0.29015232059216	0.201266430929737	-0.281869093992459	0.125151202036033	1.39240108615845	0.575771818240718	1
Merged-chr15-84448278-2	chr15	84448178	84448378	+	917.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1181.0	NM_001163145	72301.0	Mm.275387	NM_001163145	ENSMUSG00000062760	1810041L15Rik	Kiaa1644|Shisal1	RIKEN cDNA 1810041L15 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-122886902-4	chr9	122886816	122887016	+	976.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1555.0	NM_001177505	382118.0	Mm.86999	NM_001177505	ENSMUSG00000063488	Zkscan7	BC042569|Zfp167	zinc finger with KRAB and SCAN domains 7	protein-coding	2.41047059691101	2.0530323795111	2.80724526358888	1.26614755650843	1.21865505967965	3.0919337642763	2.74221509733539	2.3498461497084	0.54787249767879	0.584595797648285	0.967268722441911
Merged-chr2-30750212-3	chr2	30750114	30750314	+	818.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	29004.0	NR_037272	100526499.0		NR_037272	ENSMUSG00000093091	Mir3089	mir-3089|mmu-mir-3089	microRNA 3089	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107685544-1	chr9	107685444	107685644	+	995.0	f1_c57bl6.idr	exon (NM_001311151, exon 12 of 18)	exon (NM_001311151, exon 12 of 18)	-5952.0	NM_008140	14685.0	Mm.284853	NM_008140	ENSMUSG00000034837	Gnat1	Gnat-1|Ird1|Ird2|Tralpha|irdc|irdr|transducin	guanine nucleotide binding protein, alpha transducing 1	protein-coding	-0.476338985082015	-0.261493432160346	-0.467521971468239	0.352749614999683	-0.475519129071055	-0.462272147572583	-0.277969772875887	-0.470254143592652	-2.67788502241643	0.290009211276195	1
Merged-chr4-141793589-4	chr4	141793491	141793691	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015733)	promoter-TSS (NM_015733)	-21.0	NM_015733	12371.0	Mm.88829	NM_015733	ENSMUSG00000028914	Casp9	AI115399|APAF-3|AW493809|CASP-9|Caspase-9|ICE-LAP6|Mch6	caspase 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122784674-2	chr5	122784574	122784774	+	896.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5264.0	NM_145358	207565.0	Mm.289237	NM_145358	ENSMUSG00000029471	Camkk2	6330570N16Rik|AW061083|mKIAA0787	calcium/calmodulin-dependent protein kinase kinase 2, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-134063027-2	chr1	134062927	134063127	+	935.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16128.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-83474192-2	chr15	83474092	83474292	+	669.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9586.0	NM_001358643	23970.0	Mm.23978	NM_011862	ENSMUSG00000016664	Pacsin2	AI197433	protein kinase C and casein kinase substrate in neurons 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70561398-3	chr8	70561255	70561455	+	788.694458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007924, intron 1 of 11)	intron (NM_007924, intron 1 of 11)	21680.0	NM_007924	13716.0	Mm.271973	NM_007924	ENSMUSG00000070002	Ell	Ell1|Men	elongation factor RNA polymerase II	protein-coding	-1.5061220274826	-1.47360709383584	-1.48343987814663	-1.49151681994238	-1.50383953926072	-1.47147628845725	-1.0170701920923	-1.49007105122263	2.15652851593596	0.535359572134045	1
Merged-chr10-60260309-4	chr10	60260216	60260416	+	988.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17312.0	NM_001146123	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-32572739-3	chr16	32572663	32572863	+	756.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36133.0	NM_011638	22042.0	Mm.28683	NM_011638	ENSMUSG00000022797	Tfrc	2610028K12Rik|CD71|E430033M20Rik|Mtvr1|TFR|TFR1|TR|Trfr|p90	transferrin receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-121237115-4	chr11	121236990	121237190	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026272)	promoter-TSS (NM_026272)	-146.0	NM_026272	67608.0	Mm.291832	NM_026272	ENSMUSG00000000056	Narf	4430402O11Rik	nuclear prelamin A recognition factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-120072273-4	chr1	120072198	120072398	+	926.366699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019432, intron 1 of 1)	C-rich|Low_complexity|Low_complexity	1482.0	NM_019432	170706.0	Mm.24750	NM_019432	ENSMUSG00000050777	Tmem37	AI173373|AW540203|Pr|Pr1	transmembrane protein 37	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-26487158-4	chr14	26487056	26487256	+	735.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310445, intron 1 of 22)	intron (NM_001310445, intron 1 of 22)	47468.0	NM_032008	83997.0	Mm.36769	NM_032008	ENSMUSG00000021870	Slmap	D330001L02Rik|Miranda|Slap|mKIAA1601	sarcolemma associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117360372-2	chr8	117360272	117360472	+	703.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028941, intron 1 of 20)	intron (NM_028941, intron 1 of 20)	11202.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-24099923-2	chr1	24099823	24100023	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026604, intron 1 of 20)	CpG	418.0	NM_026604	68187.0	Mm.87130	NM_026604	ENSMUSG00000026153	Fam135a	4921533L14Rik|AI256732|AI835491	family with sequence similarity 135, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-109553287-2	chr5	109553187	109553387	+	963.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5706.0	NM_016715	57914.0	Mm.35771	NM_016715	ENSMUSG00000033467	Crlf2	CRLM2|Ly114|Tpte2|Tslpr	cytokine receptor-like factor 2	protein-coding	0.685418726013894	0.313634873327378	1.00322754050285	0.300287665684188	0.292008853126883	0.315324572960384	1.01622622966469	0.624397237840883	-0.0652037351696454	0.972403944029526	1
Merged-chr4-11556335-2	chr4	11556235	11556435	+	692.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2585.0	NM_001039556	623474.0	Mm.491200	NM_177285	ENSMUSG00000078773	Rad54b	E130016E03Rik	RAD54 homolog B (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-76292276-2	chr16	76292176	76292376	+	706.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_173440, exon 4 of 4)	exon (NM_173440, exon 4 of 4)	80773.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-6522960-4	chr15	6522882	6523082	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56865.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-67168918-3	chr6	67168818	67169018	+	904.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR25B|LTR|ERVK	-98061.0	NM_001113566	66870.0	Mm.240490	NM_025814	ENSMUSG00000036371	Serbp1	1200009K13Rik|9330147J08Rik|AL022786|Pairbp1	serpine1 mRNA binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-75385065-1	chr9	75384965	75385165	+	545.0	f1_c57bl6.idr	Intergenic	Intergenic	24294.0	NM_027418	50772.0	Mm.480076	NM_015806	ENSMUSG00000042688	Mapk6	2610021I23Rik|D130053K17Rik|Erk3|Mapk4|Mapk63|Prkm4|Prkm6	mitogen-activated protein kinase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-53633639-4	chr9	53633553	53633753	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161618, intron 9 of 17)	intron (NM_001161618, intron 9 of 17)	-23303.0	NM_144784	110446.0	Mm.293233	NM_144784	ENSMUSG00000032047	Acat1	6330585C21Rik|Acat	acetyl-Coenzyme A acetyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91346871-2	chr16	91346771	91346971	+	764.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-25912.0	NM_010509	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-45497739-4	chr5	45497629	45497829	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024434, intron 4 of 12)	intron (NM_024434, intron 4 of 12)	4355.0	NM_024434	66988.0	Mm.286830	NM_024434	ENSMUSG00000039682	Lap3	2410015L10Rik|AA410100|LAP-3|Lap|Lapep|Pep-7|Pep-S|Pep7|Peps	leucine aminopeptidase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-70463592-2	chr17	70463492	70463692	+	898.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347411, intron 4 of 14)	RSINE1|SINE|B4	38800.0	NM_027712	224997.0	Mm.311840	NM_027712	ENSMUSG00000003279	Dlgap1	4933422O14Rik|9630002F18|AI845682|AI848168|BB075781|D17Bwg0511e|GKAP/SAPAP|GKPA/SAPAP|Gkap|Sapap1|mKIAA4162	DLG associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129367775-1	chr2	129367675	129367875	+	762.0	f1_balb.idr	intron (NM_008361, intron 4 of 6)	intron (NM_008361, intron 4 of 6)	-2127.0	NR_015474	329514.0	Mm.207315	NM_177848	ENSMUSG00000074805	Il1bos	9430083I22|Gm14047	interleukin 1 beta, opposite strand	ncRNA	1.22945961844332	2.19513471876934	0.743211719884678	0.727887040328503	0.917101660459302	1.83605147251537	1.64511054854245	0.730594868636759	-0.0732346685593538	0.959124233528056	0.998431161219273
Merged-chr6-35146849-2	chr6	35146749	35146949	+	618.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13112.0	NM_001164414	53621.0	Mm.214525	NM_016877	ENSMUSG00000038784	Cnot4	Not4|Not4h|Not4hp	CCR4-NOT transcription complex, subunit 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115194429-1	chr11	115194329	115194529	+	650.0	f1_c57bl6.idr	intron (NM_001033393, intron 2 of 9)	B3|SINE|B2	6942.0	NM_001033393	320534.0	Mm.260587	NM_001033393	ENSMUSG00000045980	Tmem104	C630005D06Rik|mFLJ00021	transmembrane protein 104	protein-coding	1.6720486841176	2.32447350465705	1.18549407597795	2.24250211123556	1.10769110492737	1.92378160334942	0.942786193354648	0.922585241620246	-1.9322631089717	0.118494524774461	0.540158551764431
Merged-chr11-69080363-2	chr11	69080263	69080463	+	867.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6937.0	NR_028566	100216530.0	Mm.453052	NR_028566	ENSMUSG00000064899	Snord118	MBI-34	small nucleolar RNA, C/D box 118	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-60588865-1	chr19	60588765	60588965	+	939.5	f0_c57.idr	Intergenic	RLTR45|LTR|ERVK	-7842.0	NM_001172096	78832.0	Mm.259026	NM_030197	ENSMUSG00000033417	Cacul1	2700078E11Rik|2810417M16Rik|9830127L17Rik|AI450346|D130033C15Rik	CDK2 associated, cullin domain 1	protein-coding	3.3103520467564	2.78709703566164	2.79771545498114	4.51928844605635	2.04481281562185	1.66074046479112	1.589787398924	1.21642237004224	-3.68845577160614	3.8670829049234e-05	0.00141168135983583
Merged-chr12-16836291-2	chr12	16836137	16836337	+	923.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25272.0	NM_033270	50496.0	Mm.23296	NM_033270	ENSMUSG00000057469	E2f6	AI462434|E2F6a|E2F6b|EMA	E2F transcription factor 6	protein-coding	0.0176503950825157	-0.118983548935656	-0.124772415473394	-0.129257924067264	0.377850225661821	-0.117682424873766	-0.123493256529099	0.800972867079842	3.21223636173762	0.157752854549419	1
Merged-chr14-97709616-2	chr14	97709516	97709716	+	866.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3A|LINE|L1	460149.0	NM_001038610	13134.0	Mm.320593	NM_007826	ENSMUSG00000055639	Dach1	Dac|Dach	dachshund family transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69012036-2	chr11	69011936	69012136	+	547.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR19|LTR|ERVK	-3576.0	NM_001159519	237823.0	Mm.340288	NM_001159519	ENSMUSG00000020899	Pfas	4432409B16Rik|FGAMS|FGAR-AT|FGARAT|Gm18|PURL|Sofa	phosphoribosylformylglycinamidine synthase (FGAR amidotransferase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122260395-2	chr8	122260295	122260495	+	568.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21746.0	NM_009569	22761.0	Mm.3105	NM_009569	ENSMUSG00000049577	Zfpm1	FOG|Fog1	zinc finger protein, multitype 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75541810-3	chr11	75541705	75541905	+	881.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199284, intron 2 of 13)	intron (NM_001199284, intron 2 of 13)	-9624.0	NR_039553	100628624.0		NR_039553	ENSMUSG00000093100	Mir3971	mmu-mir-3971|mu-mir-3971	microRNA 3971	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25813757-4	chr7	25813607	25813807	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028775, intron 2 of 8)	L2c|LINE|L2	2823.0	NM_028775	74134.0	Mm.275188	NM_028775	ENSMUSG00000040703	Cyp2s1	1200011C15Rik|AU041727|C79779	cytochrome P450, family 2, subfamily s, polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-139412593-3	chr7	139412483	139412683	+	945.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355162, intron 1 of 15)	intron (NM_001355162, intron 1 of 15)	12089.0	NM_001355162	212111.0	Mm.28308	NM_183144	ENSMUSG00000025477	Inpp5a	-	inositol polyphosphate-5-phosphatase A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-85559356-4	chr8	85559267	85559467	+	942.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-4096.0	NM_019794	56445.0	Mm.475573	NM_019794	ENSMUSG00000031701	Dnaja2	1500017M13Rik|2010206B19Rik|DNAJ|DNJ3|Dnaj3|HIRIP4|PRO3015|mDj3	DnaJ heat shock protein family (Hsp40) member A2	protein-coding	4.33930158917457	4.35542062027128	4.79063388840267	4.04109273325785	4.24099735988409	4.3856459427402	4.56751702816008	3.92936716179497	-0.14302708457414	0.723736861860919	0.998431161219273
Merged-chr12-111016985-4	chr12	111016872	111017072	+	942.2625119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22574.0	NR_036598	77878.0	Mm.293198	NR_036598	ENSMUSG00000113056	6030440G07Rik	-	RIKEN cDNA 6030440G07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-40308572-1	chr8	40308472	40308672	+	1000.0	f1_c57bl6.idr	promoter-TSS (NR_106126)	promoter-TSS (NR_106126)	521.0	NM_030110	78506.0	Mm.169893	NM_030110	ENSMUSG00000039478	Micu3	2900075B16Rik|Efha2	mitochondrial calcium uptake family, member 3	protein-coding	3.66514220680345	1.82247603718819	3.37851696674619	3.60073950667867	3.74944331228918	3.52370177882851	4.29544437575514	3.68756405116349	0.813864804397811	0.177733759781938	0.647898414987956
Merged-chr11-120032364-1	chr11	120032264	120032464	+	690.0	f1_c57bl6.idr	intron (NM_001198785, intron 1 of 13)	intron (NM_001198785, intron 1 of 13)	9417.0	NM_001198787	11302.0	Mm.6826	NM_007377	ENSMUSG00000025375	Aatk	AATYK|aatyk1|mKIAA0641	apoptosis-associated tyrosine kinase	protein-coding	2.0353082534455	0.753431007531793	1.79002752650216	0.723177969850071	1.33453824126826	0.757174774189179	0.740307511952369	1.53580294195703	-1.10434350281962	0.466245124405531	0.922971992343415
Merged-chr10-58232527-2	chr10	58232427	58232627	+	725.625	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081954, exon 1 of 1)	exon (NM_001081954, exon 1 of 1)	148.0	NM_001081954	664783.0	Mm.482575	NM_001081954		Dux	AW822073|Dux4|Duxbl|EG664783	double homeobox	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-142015253-5	chr4	142015128	142015328	+	984.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2670.0	NR_131014	78917.0	Mm.139995	NR_131014	ENSMUSG00000085761	4930455G09Rik	-	RIKEN cDNA 4930455G09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59739338-4	chr15	59739221	59739421	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55638.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-136154906-2	chr4	136154806	136155006	+	683.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4_|SINE|ID	11084.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-125137275-4	chr5	125137172	125137372	+	942.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011424, intron 1 of 46)	intron (NM_011424, intron 1 of 46)	41942.0	NM_001253905	20602.0	Mm.278646	NM_011424	ENSMUSG00000029478	Ncor2	N-CoR|SMRT|SMRTe	nuclear receptor co-repressor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-25251289-2	chr9	25251189	25251389	+	784.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359736)	promoter-TSS (NM_001359736)	-702.0	NM_001359736	235072.0	Mm.270259	NM_009859	ENSMUSG00000001833	Sept7	Cdc10|E430034N22	septin 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139363930-2	chr5	139363830	139364030	+	951.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_028469, intron 3 of 4)	intron (NM_028469, intron 3 of 4)	5815.0	NR_029768	723898.0		NR_029768	ENSMUSG00000065593	Mir339	Mirn339|mir-339|mmu-mir-339	microRNA 339	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-101970128-5	chr5	101969991	101970191	+	645.133362	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 4 of 66)	intron (NM_172882, intron 4 of 66)	99830.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	1.57716761382005	1.15565546937462	2.26051417076969	1.50611493649465	2.24338658416089	1.92098225848608	1.85609678365499	1.51302343291476	0.61076167914568	0.570332613670778	0.962718661854691
Merged-chr10-78166300-2	chr10	78166200	78166400	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_138601, intron 4 of 6)	intron (NM_138601, intron 4 of 6)	3468.0	NM_138601	28295.0	Mm.268691	NM_138601	ENSMUSG00000053329	D10Jhu81e	C21orf33|ES1	DNA segment, Chr 10, Johns Hopkins University 81 expressed	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-16556579-2	chr5	16556479	16556679	+	654.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289458, intron 2 of 18)	intron (NM_001289458, intron 2 of 18)	2678.0	NM_001289461	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-29983164-3	chr13	29983081	29983281	+	596.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010093, intron 1 of 6)	intron (NM_010093, intron 1 of 6)	1210.0	NM_001289920	13557.0	Mm.268356	NM_010093	ENSMUSG00000016477	E2f3	E2F3b|E2f3a	E2F transcription factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-28094095-3	chr5	28094020	28094220	+	838.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22708.0	NM_153526	231070.0	Mm.30221	NM_153526	ENSMUSG00000045294	Insig1	1810013C12Rik|Insig-1	insulin induced gene 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-38064692-2	chr7	38064593	38064793	+	598.0	f0_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	42797.0	NM_007633	12447.0	Mm.16110	NM_007633	ENSMUSG00000002068	Ccne1	AW538188|CycE1	cyclin E1	protein-coding	1.1848769605929	0.864909968769733	2.30056348639421	1.25509708622474	1.1956004856259	0.869675675159066	2.32154989978915	1.26224935349661	0.0394244184578901	0.97555127212302	0.998431161219273
Merged-chr7-141048981-4	chr7	141048882	141049082	+	808.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC3|LINE|L1	-12292.0	NM_177897	330671.0	Mm.133741	NM_177897	ENSMUSG00000055629	B4galnt4	BC038881|Gm1095|beta4GalNAcT4	beta-1,4-N-acetyl-galactosaminyl transferase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-78712797-4	chr11	78712699	78712899	+	945.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-15374.0	NM_008702	18099.0	Mm.9001	NM_008702	ENSMUSG00000017376	Nlk	AI194375	nemo like kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-45114725-4	chr2	45114604	45114804	+	959.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_110572)	TTS (NR_110572)	-1425.0	NM_015753	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-99191848-2	chr10	99191748	99191948	+	726.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153333, intron 11 of 12)	L1MB7|LINE|L1	-71383.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-103181186-4	chr9	103181050	103181250	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173781, intron 7 of 7)	intron (NM_173781, intron 7 of 7)	20915.0	NM_009275	20818.0	Mm.273053	NM_009275	ENSMUSG00000032553	Srprb	AA409543	signal recognition particle receptor, B subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-110102099-4	chr5	110102000	110102200	+	967.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001281812, intron 4 of 6)	intron (NM_001281812, intron 4 of 6)	1541.0	NM_001281812	403178.0	Mm.297057	NM_207279	ENSMUSG00000064247	Plcxd1	A330045H12Rik|Gm576	phosphatidylinositol-specific phospholipase C, X domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-100015796-4	chr10	100015685	100015885	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013598)	promoter-TSS (NM_013598)	-36.0	NM_001347156	17311.0	Mm.45124	NM_013598	ENSMUSG00000019966	Kitl	Clo|Con|Gb|Kitlg|Mgf|SCF|SF|SLF|Sl|blz|contrasted	kit ligand	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131548730-4	chr1	131548616	131548816	+	984.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20813.0	NM_175382	108900.0	Mm.31278	NM_175382	ENSMUSG00000055184	Fam72a	2700049P18Rik|P17	family with sequence similarity 72, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-57571449-4	chr10	57571336	57571536	+	911.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38907.0	NM_019760	56442.0	Mm.29344	NM_019760	ENSMUSG00000019877	Serinc1	1500011D18Rik|AI315070|AIGP-2|TMS-2|Tde1l|Tde2|Tms2|mKIAA1253	serine incorporator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-29393549-4	chr19	29393440	29393640	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17379.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31272455-1	chr14	31272355	31272555	+	807.5	f0_balb.idr	intron (NM_001033668, intron 53 of 77)	(CAAAA)n|Simple_repeat|Simple_repeat	20966.0	NM_027088	104416.0	Mm.3779	NM_027088	ENSMUSG00000021901	Bap1	2300006C11Rik|AA989761|AW553466|mKIAA0272|uch-x4	Brca1 associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-70482115-1	chr18	70482015	70482215	+	660.0	f0_balb.idr	intron (NM_001289650, intron 5 of 8)	intron (NM_001289650, intron 5 of 8)	9449.0	NM_001289650	170461.0	Mm.83623	NM_029019	ENSMUSG00000079608	Stard6	1700011K09Rik|4833424I06Rik|4933429L05Rik|AI644424	StAR-related lipid transfer (START) domain containing 6	protein-coding	1.49052865865458	1.81512714578341	2.01571405289274	2.24666791959908	2.0644281854569	1.82803132173697	2.0316385262311	1.17163015465971	-0.276810735588902	0.791293353584945	0.998431161219273
Merged-chr8-70759207-4	chr8	70759141	70759341	+	801.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009001)	TTS (NM_009001)	1680.0	NM_183170	234384.0	Mm.213010	NM_183170	ENSMUSG00000035559	Mpv17l2	Fksg24	MPV17 mitochondrial membrane protein-like 2	protein-coding	1.77769986101296	2.15658894692095	2.78536998327358	2.1773168129361	2.59354724044375	2.59442379038808	2.2553491176175	2.87958488229156	0.709107500586838	0.382704356953076	0.873830285725007
Merged-chr17-8225960-4	chr17	8225912	8226112	+	876.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10031.0	NM_001190333	12458.0	Mm.8007	NM_009835	ENSMUSG00000040899	Ccr6	CC-CKR-6|CCR-6|Cmkbr6|KY411	chemokine (C-C motif) receptor 6	protein-coding	2.06558775099232	1.74002355930241	2.81126699015696	3.03553691587689	2.69344072589125	3.02011537413964	1.69796415877117	2.32531187167534	-0.00283886796176453	0.997369114363505	0.999268611847349
Merged-chr11-16954285-4	chr11	16954182	16954382	+	811.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_176982, exon 4 of 4)	exon (NM_176982, exon 4 of 4)	2872.0	NM_176982	319701.0	Mm.120672	NM_176982	ENSMUSG00000044966	Fbxo48	A630050E13Rik	F-box protein 48	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-79163317-2	chr3	79163217	79163417	+	705.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17442.0	NM_001099624	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-95548673-4	chr10	95548566	95548766	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_027722, exon 5 of 5)	3' UTR (NM_027722, exon 5 of 5)	10655.0	NR_037212	100526463.0		NR_037212	ENSMUSG00000092867	Mir3058	mir-3058|mmu-mir-3058	microRNA 3058	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-32183920-4	chr6	32183810	32184010	+	891.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175750, intron 22 of 31)	intron (NM_175750, intron 22 of 31)	133622.0	NM_029587	76382.0	Mm.23510	NM_029587	ENSMUSG00000029766	1700012A03Rik	AI429084	RIKEN cDNA 1700012A03 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-8346055-2	chr5	8345955	8346155	+	690.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001007220, intron 2 of 28)	intron (NM_001007220, intron 2 of 28)	22105.0	NM_001007221	11496.0	Mm.275895	NM_001007220	ENSMUSG00000040537	Adam22	2900022I03Rik|AI854032|MDC2	a disintegrin and metallopeptidase domain 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-32391596-3	chr18	32391457	32391657	+	884.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360876, intron 1 of 17)	intron (NM_001360876, intron 1 of 17)	-13273.0	NR_045403	402767.0	Mm.385109	NR_045403	ENSMUSG00000097413	A830052D11Rik	-	RIKEN cDNA A830052D11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-97673031-4	chr1	97672931	97673131	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11013.0	NM_133825	52392.0	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-95674690-3	chr9	95674566	95674766	+	688.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029620, intron 3 of 8)	MTD|LTR|ERVL-MaLR	37038.0	NM_029620	76477.0	Mm.46016	NM_029620	ENSMUSG00000015354	Pcolce2	2400001O18Rik|Pcpe2	procollagen C-endopeptidase enhancer 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-109247089-4	chr11	109246990	109247190	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001165934, intron 12 of 16)	L1MB8|LINE|L1	51091.0	NM_001165934	19739.0	Mm.38548	NM_011268	ENSMUSG00000020599	Rgs9	RGS9-1|Rgs9-2	regulator of G-protein signaling 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-27142978-2	chr6	27142878	27143078	+	605.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	793772.0	NR_030420	735266.0		NR_030420	ENSMUSG00000076067	Mir592	Mirn592|mir-592|mmu-mir-592	microRNA 592	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45628895-4	chr7	45628787	45628987	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_028544, exon 3 of 12)	exon (NM_028544, exon 3 of 12)	1350.0	NM_028544	69903.0	Mm.181396	NM_028544	ENSMUSG00000044562	Rasip1	1110025D03Rik|2610025P08Rik|AI853551|Rain	Ras interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122059748-4	chr5	122059577	122059777	+	956.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9826.0	NM_001312908	13048.0	Mm.156172	NM_007804	ENSMUSG00000042589	Cux2	1700051K22Rik|Cutl2|Cux-2	cut-like homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-94487939-2	chr16	94487839	94488039	+	647.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38690.0	NM_007834	13185.0	Mm.7472	NM_007834	ENSMUSG00000022898	Dscr3	AW538125|Dcra	DSCR3 arrestin fold containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-94199678-4	chr8	94199559	94199759	+	843.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14905.0	NM_001357266	71805.0	Mm.458170	NM_172410	ENSMUSG00000032939	Nup93	2410008G02Rik	nucleoporin 93	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-40808725-2	chr9	40808625	40808825	+	874.2999880000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7452.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-142961775-2	chr5	142961675	142961875	+	802.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007984, intron 1 of 4)	intron (NM_007984, intron 1 of 4)	1420.0	NM_007984	14086.0	Mm.289707	NM_007984	ENSMUSG00000029581	Fscn1	AI663989|Fan1|fascin-1	fascin actin-bundling protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-32837233-4	chr18	32837154	32837354	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045381)	promoter-TSS (NR_045381)	29.0	NM_144863	225348.0	Mm.38816	NM_144863	ENSMUSG00000038299	Wdr36	5730444A13Rik|Ta-wdrp	WD repeat domain 36	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-71951434-4	chr9	71951324	71951524	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011544, intron 5 of 20)	intron (NM_011544, intron 5 of 20)	-55328.0	NM_001253863	21406.0	Mm.171615	NM_011544	ENSMUSG00000032228	Tcf12	A130037E08Rik|ALF1|HEB|HEBAlt|HTF-4|HTF4|ME1|REB|bHLHb20	transcription factor 12	protein-coding	2.29528847229051	2.57330876266204	3.15151120958766	2.30151773925342	2.20332369444771	1.75840587853138	2.25031322510565	2.63228021501163	-0.824798907045471	0.314176135662628	0.816023656158222
Merged-chr16-12032679-4	chr16	12032588	12032788	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028277, intron 2 of 4)	intron (NM_028277, intron 2 of 4)	48575.0	NM_001174086	72555.0	Mm.310139	NM_028277	ENSMUSG00000022494	Shisa9	2700045P11Rik|Ckamp44	shisa family member 9	protein-coding	5.04329785114022	4.74698332572384	5.71928271799008	5.44203812542702	5.2927636502466	4.48183625432192	5.44444937030098	5.70052141716677	0.0188791897977944	0.955849899229169	0.998431161219273
Merged-chr9-57774464-2	chr9	57774364	57774564	+	784.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-8604.0	NM_007713	102414.0	Mm.25720	NM_007713	ENSMUSG00000032316	Clk3	AI256811	CDC-like kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-11778510-4	chr2	11778404	11778604	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001348237)	promoter-TSS (NM_001348237)	751.0	NM_177268	320816.0	Mm.260201	NM_177268	ENSMUSG00000047909	Ankrd16	2810455F06Rik|AI646698|D430029B21Rik	ankyrin repeat domain 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-125562109-2	chr1	125562029	125562229	+	576.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028787, intron 1 of 15)	ID_B1|SINE|B4	1127.0	NM_028787	74150.0	Mm.28654	NM_028787	ENSMUSG00000026342	Slc35f5	1300003P13Rik|AI646727	solute carrier family 35, member F5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-88711783-2	chr10	88711683	88711883	+	699.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19318.0	NM_001037166	237433.0	Mm.478763	NM_001037166		Gm4925	EG237433	predicted gene 4925	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-56928316-4	chr9	56928185	56928385	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175483)	promoter-TSS (NM_175483)	86.0	NM_175483	235406.0	Mm.191459	NM_175483	ENSMUSG00000032733	Snx33	E130307J07Rik|Sh3px3	sorting nexin 33	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-79695434-3	chr2	79695355	79695555	+	920.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12325.0	NM_172420	75276.0	Mm.257373	NM_172420	ENSMUSG00000034683	Ppp1r1c	4930565M23Rik|4930579P15Rik	protein phosphatase 1, regulatory (inhibitor) subunit 1C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21787102-2	chr9	21787002	21787202	+	719.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_145611, intron 3 of 11)	intron (NM_145611, intron 3 of 11)	11444.0	NM_145611	235041.0	Mm.257371	NM_145611	ENSMUSG00000032194	Kank2	AI504612|Ankrd25|BC010245	KN motif and ankyrin repeat domains 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72151049-2	chr6	72150949	72151149	+	962.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001035228, intron 6 of 6)	GA-rich|Low_complexity|Low_complexity	-27852.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-34432010-4	chr12	34431910	34432110	+	911.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271386, intron 6 of 27)	intron (NM_001271386, intron 6 of 27)	96879.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133663018-2	chr4	133662962	133663162	+	609.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145956, intron 2 of 2)	intron (NM_001145956, intron 2 of 2)	9585.0	NM_001145955	230801.0	Mm.217004	NM_178698	ENSMUSG00000043257	Pigv	B330013B03|D430024F16Rik	phosphatidylinositol glycan anchor biosynthesis, class V	protein-coding	1.68648585054718	1.19243071595355	2.96262469249019	2.58910439767545	2.61568390981895	1.20016589296253	1.16498641331762	2.60344996519045	-0.426675972583873	0.709123046117292	0.998431161219273
Merged-chr9-25569541-2	chr9	25569441	25569641	+	793.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 3 of 7)	RMER17C2|LTR|ERVK	87944.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-93029604-2	chr16	93029504	93029704	+	950.3333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-203530.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-97537185-1	chr16	97537085	97537285	+	541.0	f1_balb.idr	intron (NM_013606, intron 1 of 13)	intron (NM_013606, intron 1 of 13)	1102.0	NM_013606	17858.0	Mm.14157	NM_013606	ENSMUSG00000023341	Mx2	AI528743|Mx-2	MX dynamin-like GTPase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-40440688-3	chr18	40440600	40440800	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026135, intron 1 of 1)	MTD|LTR|ERVL-MaLR	182339.0	NM_026135	383348.0	Mm.76366	NM_026135	ENSMUSG00000051401	Kctd16	4930434H12Rik|Gm1267	potassium channel tetramerisation domain containing 16	protein-coding	2.04460395164699	1.66211110515015	1.45303941793678	2.16111293915087	1.49783397199325	1.31522610183983	1.060199752138	1.69926634375687	-1.48066425964637	0.189915734831933	0.668558565029891
Merged-chr12-110549426-2	chr12	110549326	110549526	+	595.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081457, intron 5 of 12)	intron (NM_001081457, intron 5 of 12)	-41948.0	NR_033340	319786.0	Mm.129691	NR_033340		B930059L03Rik	-	RIKEN cDNA B930059L03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-34016076-4	chr6	34015940	34016140	+	836.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13408.0	NM_028886	74354.0	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-89199278-4	chr9	89199182	89199382	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007534)	promoter-TSS (NM_007534)	9.0	NM_007534	12045.0	Mm.479217	NM_007534	ENSMUSG00000089929	Bcl2a1b	A1-b	B cell leukemia/lymphoma 2 related protein A1b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-70779138-2	chr6	70779038	70779238	+	586.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009075, intron 3 of 8)	Lx7|LINE|L1	13037.0	NM_009075	19895.0	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-41615532-2	chr5	41615430	41615630	+	743.416626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	92161.0	NM_001310592	100972.0	Mm.41555	NM_027295	ENSMUSG00000029128	Rab28	2700023P08Rik|AW496496	RAB28, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-38402462-4	chr5	38402361	38402561	+	905.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001012363, intron 6 of 11)	ORR1D2|LTR|ERVL-MaLR	58072.0	NR_046191	78172.0	Mm.243835	NR_046191	ENSMUSG00000106932	4930487D11Rik	-	RIKEN cDNA 4930487D11 gene	ncRNA	1.16162914907989	3.22673891375983	2.57851544096433	1.21605923357355	1.93540849317703	2.46969456900704	2.25461391414688	2.41400761288038	-0.184016096966837	0.858874377666446	0.998431161219273
Merged-chr4-70409315-2	chr4	70409215	70409415	+	705.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001313762, intron 1 of 33)	intron (NM_001313762, intron 1 of 33)	1120.0	NM_001313762	214444.0	Mm.370777	NM_145990	ENSMUSG00000039298	Cdk5rap2	2900018K03Rik|an|mKIAA1633	CDK5 regulatory subunit associated protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-25574885-4	chr2	25574748	25574948	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029293)	promoter-TSS (NM_029293)	23.0	NM_029293	75454.0	Mm.458079	NM_029293	ENSMUSG00000036504	Phpt1	1700008C22Rik|PHP|Php14	phosphohistidine phosphatase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-164867376-4	chr2	164867273	164867473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9665.0	NM_011125	18830.0	Mm.6105	NM_011125	ENSMUSG00000017754	Pltp	Bpife|OD107	phospholipid transfer protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28177305-4	chr17	28177204	28177404	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172617)	promoter-TSS (NM_172617)	108.0	NM_001357995	224656.0	Mm.267359	NM_172617	ENSMUSG00000024220	Zfp523	2810027J07|BC025615|Znf76	zinc finger protein 523	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-52011504-3	chr3	52011394	52011594	+	871.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	93512.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90489116-4	chr2	90489016	90489216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	-9942.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36089651-4	chr1	36089550	36089750	+	925.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015818, intron 1 of 1)	intron (NM_015818, intron 1 of 1)	21250.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-47322591-4	chr4	47322513	47322713	+	834.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-30609.0	NM_001312868	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-53494676-5	chr11	53494579	53494779	+	992.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14484.0	NM_183173	237761.0	Mm.145208	NM_183173	ENSMUSG00000044352	Sowaha	A830006N08Rik|Ankrd43	sosondowah ankyrin repeat domain family member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-94670489-4	chr9	94670425	94670625	+	907.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177909, intron 1 of 15)	intron (NM_177909, intron 1 of 15)	633.0	NM_177909	331004.0	Mm.326125	NM_177909	ENSMUSG00000031129	Slc9a9	5730527A11Rik|9930105B05|AI854429|Nhe9	solute carrier family 9 (sodium/hydrogen exchanger), member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41364709-4	chr19	41364599	41364799	+	866.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 2 of 16)	intron (NM_031376, intron 2 of 16)	20371.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129066550-3	chr2	129066440	129066640	+	930.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027192, intron 1 of 6)	intron (NM_027192, intron 1 of 6)	593.0	NM_027192	69737.0	Mm.33909	NM_027192	ENSMUSG00000027394	Ttl	2410003M22Rik|2700049H19Rik|AI848570	tubulin tyrosine ligase	protein-coding	-0.316014499470142	-0.29770539512494	-0.303644604216667	0.175653902657711	-0.314855514134337	-0.296374244720789	0.738043840806762	-0.307455855292437	1.58662308174373	0.528845190281784	1
Merged-chr19-43648535-3	chr19	43648433	43648633	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6526.0	NR_152201	100043245.0	Mm.402688	NR_152201		Gm4311	-	predicted gene 4311	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-142530226-4	chr3	142530130	142530330	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001083312)	promoter-TSS (NM_001083312)	-106.0	NM_001083312	229900.0	Mm.45740	NM_145545	ENSMUSG00000040253	Gbp7	9830147J24Rik	guanylate binding protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-45750221-3	chr13	45750105	45750305	+	721.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199304, intron 4 of 6)	intron (NM_001199304, intron 4 of 6)	214786.0	NM_001199304	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-9554032-1	chr18	9553932	9554132	+	861.0	f1_c57bl6.idr	Intergenic	Intergenic	65437.0	NM_007593	26369.0	Mm.195831	NM_007593	ENSMUSG00000050996	Cetn1	caltractin	centrin 1	protein-coding	-1.24900173669778	-1.22209922953844	-1.23260730456294	-1.24123895025716	-0.973140129410997	-0.88914210142926	-1.23022850670784	-1.23969388980479	2.48739720405528	0.449861323143152	1
Merged-chr3-101003939-5	chr3	101003852	101004052	+	820.9023440000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167906, intron 7 of 8)	intron (NM_001167906, intron 7 of 8)	25543.0	NM_001167906	630146.0	Mm.190915	NM_001099332	ENSMUSG00000086564	Cd101	EWI-101|Gm1016|Gm734|Igsf2	CD101 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-24645346-4	chr10	24645231	24645431	+	899.020874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008813, exon 24 of 25)	exon (NM_008813, exon 24 of 25)	49889.0	NM_010217	14219.0	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-24634034-2	chr12	24633967	24634167	+	572.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17304.0	NM_178357	194655.0	Mm.9616	NM_178357	ENSMUSG00000020653	Klf11	9830142A17|D12Ertd427e|Tieg2|Tieg2b|Tieg3	Kruppel-like factor 11	protein-coding	0.80743726733176	1.71538409296577	1.85042226779862	1.20699520613692	0.81070019294486	1.73019602486677	1.06873660826188	1.36101286539843	-0.604328526308975	0.652433898175058	0.986434615290108
Merged-chr4-42951966-2	chr4	42951866	42952066	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355439, intron 2 of 4)	intron (NM_001355439, intron 2 of 4)	1570.0	NM_001355440	56323.0	Mm.20437	NM_019874	ENSMUSG00000036052	Dnajb5	1110058L06Rik|AI462558|Hsc40|Hsp40-3	DnaJ heat shock protein family (Hsp40) member B5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-139888000-2	chr6	139887900	139888100	+	595.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_207683, intron 25 of 31)	intron (NM_207683, intron 25 of 31)	46555.0	NM_011084	18705.0	Mm.333471	NM_011084	ENSMUSG00000030228	Pik3c2g	C80387|PI3K-C2-gamma	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-89235638-2	chr6	89235538	89235738	+	582.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19459.0	NR_033190	330379.0	Mm.297741	NM_201356		Gm839	-	predicted gene 839	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-121991339-4	chr14	121991073	121991273	+	782.354126	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026861, intron 6 of 8)	intron (NM_026861, intron 6 of 8)	-25980.0	NM_183031	321019.0	Mm.265618	NM_183031	ENSMUSG00000051212	Gpr183	Ebi2	G protein-coupled receptor 183	protein-coding	0.0204324884229937	-0.0770824204258684	-0.414119760312111	-0.416819233000421	-0.420614116221246	-0.070140046337254	-0.413345935123145	-0.416348477232579	-1.34203201511537	0.605941210955992	1
Merged-chr10-84534272-4	chr10	84534347	84534547	+	971.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175451)	promoter-TSS (NM_175451)	-559.0	NM_175451	216197.0	Mm.334999	NM_175451	ENSMUSG00000046841	Ckap4	5630400A09Rik|CLIMP-63|P63	cytoskeleton-associated protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-54735737-4	chr14	54735634	54735834	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_016972, exon 5 of 11)	exon (NM_016972, exon 5 of 11)	-23560.0	NM_207131	110794.0	Mm.236223	NM_207131	ENSMUSG00000052435	Cebpe	C/EBPe|C/EBPepsilon|CRP1|Gm294	CCAAT/enhancer binding protein (C/EBP), epsilon	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-44724406-4	chr16	44724302	44724502	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_145972, exon 1 of 9)	exon (NM_145972, exon 1 of 9)	101.0	NM_145972	212547.0	Mm.310573	NM_145972	ENSMUSG00000036208	Nepro	-	nucleolus and neural progenitor protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-93271862-2	chr15	93271762	93271962	+	775.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346785, intron 1 of 7)	intron (NM_001346785, intron 1 of 7)	3317.0	NM_001357006	223827.0	Mm.22819	NM_001033275	ENSMUSG00000036197	Gxylt1	Glt8d3|Gm1228|Gm87	glucoside xylosyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-46798312-2	chr13	46798212	46798412	+	563.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010617, intron 20 of 37)	intron (NM_010617, intron 20 of 37)	-70463.0	NM_175749	218210.0	Mm.255398	NM_175749	ENSMUSG00000021374	Nup153	B130015D15Rik|C88147	nucleoporin 153	protein-coding	1.76421633703782	1.25333211503196	0.847934585050029	1.31495466846277	1.5550696811357	1.26244345743579	0.850778421046651	1.32193270708804	-0.27319320859327	0.838345343594122	0.998431161219273
Merged-chr7-44465498-2	chr7	44465398	44465598	+	576.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026690)	promoter-TSS (NM_026690)	63.0	NM_026690	68352.0	Mm.88478	NM_026690	ENSMUSG00000038704	Aspdh	0610012D14Rik	aspartate dehydrogenase domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76698094-4	chr15	76697976	76698176	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_182805, exon 5 of 11)	exon (NM_182805, exon 5 of 11)	1350.0	NM_182805	76282.0	Mm.30130	NM_182805	ENSMUSG00000022546	Gpt	1300007J06Rik|2310022B03Rik|ALT|ALT1|Gpt-1|Gpt1	glutamic pyruvic transaminase, soluble	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-80941034-4	chr13	80940929	80941129	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_103550, intron 1 of 4)	AmnSINE1|SINE|Deu	626.0	NR_103550	71416.0	Mm.415500	NR_103550		5430425K12Rik	-	RIKEN cDNA 5430425K12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-20455220-4	chr11	20455133	20455333	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-88020.0	NM_021372	58172.0	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	3.86642859956983	3.19537826017828	4.5216793473016	3.51115224655239	4.42920355955238	3.93881321225329	4.46367100518238	3.69307429361523	0.411463787933126	0.403596572448995	0.888897182593852
Merged-chr16-90456834-4	chr16	90456689	90456889	+	946.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015755, intron 4 of 10)	intron (NM_015755, intron 4 of 10)	70392.0	NM_015755	26559.0	Mm.125874	NM_015755	ENSMUSG00000053414	Hunk	Bstk1|Mak-v	hormonally upregulated Neu-associated kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-24573851-2	chr5	24573751	24573951	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359205, intron 3 of 13)	intron (NM_001359205, intron 3 of 13)	3495.0	NM_001359205	27407.0	Mm.21629	NM_013853	ENSMUSG00000028953	Abcf2	0710005O05Rik|Drr3|E430001O06	ATP-binding cassette, sub-family F (GCN20), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-40349278-4	chr10	40349181	40349381	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001168304)	promoter-TSS (NM_001168304)	-27.0	NM_001291817	78334.0	Mm.200924	NM_198164	ENSMUSG00000038481	Cdk19	2700084L06Rik|AI845279|AW228747|CDK11|Cdc2l6|mKIAA1028	cyclin-dependent kinase 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-100186539-2	chr12	100186439	100186639	+	614.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1429.0	NR_045282	100038378.0	Mm.387075	NR_045282	ENSMUSG00000072884	Gm10433	-	predicted gene 10433	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-47228445-4	chr13	47228361	47228561	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146042, intron 3 of 7)	intron (NM_146042, intron 3 of 7)	34458.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-64591898-3	chr17	64591809	64592009	+	919.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9740.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-37972004-4	chr15	37971897	37972097	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001112721, intron 56 of 58)	intron (NM_001112721, intron 56 of 58)	-10942.0	NM_199476	382985.0	Mm.24738	NM_199476	ENSMUSG00000022292	Rrm2b	p53R2	ribonucleotide reductase M2 B (TP53 inducible)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-44365808-2	chr11	44365708	44365908	+	869.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-34255.0	NM_001303244	16160.0	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-99498100-4	chr9	99497989	99498189	+	809.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028768, intron 16 of 21)	intron (NM_028768, intron 16 of 21)	27668.0	NR_028123	69797.0	Mm.307159	NR_028123	ENSMUSG00000046242	1600029I14Rik	-	RIKEN cDNA 1600029I14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-52077781-3	chr3	52077694	52077894	+	638.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	27212.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-72891678-4	chr5	72891591	72891791	+	965.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22671.0	NM_001113423	75991.0	Mm.121285	NM_153567	ENSMUSG00000036087	Slain2	5033405K12Rik|8030444K12Rik|AI596370	SLAIN motif family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-24634738-2	chr19	24634655	24634855	+	643.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39253.0	NM_183160	226040.0	Mm.391170	NM_183160	ENSMUSG00000048572	Tmem252	E030010A14Rik	transmembrane protein 252	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-56150958-2	chr9	56150858	56151058	+	846.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019793, intron 1 of 6)	MYSERV16_I-int|LTR|ERVK	10112.0	NM_019793	56434.0	Mm.28484	NM_019793	ENSMUSG00000032324	Tspan3	1700055K04Rik|TM4-A|Tm4sf8	tetraspanin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-32857052-4	chr12	32856937	32857137	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32921.0	NR_045032	100504486.0	Mm.440246	NR_045032		Gdap10	Gdap-ps	ganglioside-induced differentiation-associated-protein 10	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46628082-1	chr8	46627982	46628182	+	583.0	f0_balb.idr	intron (NM_001284409, intron 1 of 6)	intron (NM_001284409, intron 1 of 6)	10791.0	NM_009810	12367.0	Mm.34405	NM_009810	ENSMUSG00000031628	Casp3	A830040C14Rik|AC-3|CASP-3|CC3|CPP-32|CPP32|Caspase-3|Lice|SCA-1|Yama|mldy	caspase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-31062775-6	chr3	31062665	31062865	+	700.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	23799.0	NR_105975	102465610.0		NR_105975	ENSMUSG00000098890	Mir7008	Gm27752|mmu-mir-7008	microRNA 7008	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-110695954-3	chr12	110695868	110696068	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010480, intron 1 of 10)	CpG	427.0	NM_010480	15519.0	Mm.1843	NM_010480	ENSMUSG00000021270	Hsp90aa1	86kDa|89kDa|AL024080|AL024147|Hsp86-1|Hsp89|Hsp90|Hspca|hsp4	heat shock protein 90, alpha (cytosolic), class A member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-145013473-3	chr4	145013367	145013567	+	916.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276465, intron 67 of 69)	intron (NM_001276465, intron 67 of 69)	120330.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-19103212-4	chr10	19103106	19103306	+	765.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38543.0	NR_038021	100504265.0	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	1.16406862742503	0.632387119754505	0.619468169029378	1.3555707739631	1.80222695592831	0.635265954999788	0.622338804736125	1.2529174944174	0.782330415987515	0.628982936171935	0.981055511574238
Merged-chr2-75588765-4	chr2	75588671	75588871	+	894.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70488.0	NM_146130	229279.0	Mm.316306	NM_053263	ENSMUSG00000059005	Hnrnpa3	2410013L13Rik|2610209F03Rik|2610510D13Rik|Hnrpa3	heterogeneous nuclear ribonucleoprotein A3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-94432392-4	chr9	94432340	94432540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	IMPB_01|Satellite|Satellite	105641.0	NM_001033145	68861.0	Mm.258746	NM_001033145	ENSMUSG00000045414	1190002N15Rik	GoPro49|HASF	RIKEN cDNA 1190002N15 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-8021505-4	chr10	8021413	8021613	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-65390.0	NM_138667	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-113267420-4	chr13	113267317	113267517	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57758.0	NM_023612	71690.0	Mm.38929	NM_023612	ENSMUSG00000042379	Esm1	0610042H23Rik|AV004503|ESM-1	endothelial cell-specific molecule 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-106226390-4	chr9	106226286	106226486	+	896.966675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_031178, exon 2 of 2)	exon (NM_031178, exon 2 of 2)	3788.0	NM_031178	81897.0	Mm.44889	NM_031178	ENSMUSG00000045322	Tlr9	-	toll-like receptor 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-83314663-4	chr4	83314569	83314769	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027238, intron 1 of 19)	MIR|SINE|MIR	9520.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-43482008-4	chr13	43481908	43482108	+	974.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1035.0	NM_019930	56705.0	Mm.148781	NM_019930	ENSMUSG00000038546	Ranbp9	IBAP-1|Ibap1|RanBPM	RAN binding protein 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-182564593-2	chr1	182564493	182564693	+	575.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145806)	promoter-TSS (NM_001145806)	-414.0	NM_001145806	170725.0	Mm.189201	NM_130890	ENSMUSG00000038599	Capn8	nCL-2|nCL-2'	calpain 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-113772542-2	chr9	113772442	113772642	+	560.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114347, intron 5 of 39)	intron (NM_001114347, intron 5 of 39)	-20788.0	NM_001286603	76499.0	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32757156-4	chr2	32757038	32757238	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045485)	promoter-TSS (NR_045485)	-96.0	NR_045485	30933.0	Mm.200695	NM_152800	ENSMUSG00000009563	Tor2a	Prosalusin	torsin family 2, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-12932951-2	chr10	12932851	12933051	+	837.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-9824.0	NR_038028	320273.0	Mm.417706	NR_038027	ENSMUSG00000097378	B230208H11Rik	-	RIKEN cDNA B230208H11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95658773-4	chr3	95658663	95658863	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008562)	promoter-TSS (NM_008562)	42.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-46876234-2	chr16	46876134	46876334	+	579.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1-int|LTR|ERVL-MaLR	-379267.0	NM_021497	58998.0	Mm.40477	NM_021495	ENSMUSG00000022656	Nectin3	2610301B19Rik|3000002N23Rik|4921513D19Rik|AA407785|AU016832|AW538082|CD113|Pvrl3	nectin cell adhesion molecule 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126587057-4	chr8	126586995	126587195	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6341.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81289474-4	chr10	81289339	81289539	+	879.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001282095, intron 1 of 20)	intron (NM_001282095, intron 1 of 20)	1828.0	NM_013769	27375.0	Mm.27984	NM_013769	ENSMUSG00000034917	Tjp3	-	tight junction protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-101169989-3	chr4	101169892	101170092	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146145, intron 11 of 24)	intron (NM_146145, intron 11 of 24)	95290.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44858612-2	chr7	44858512	44858712	+	771.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_021549, exon 3 of 16)	exon (NM_021549, exon 3 of 16)	1209.0	NM_001290767	59047.0	Mm.238254	NM_021549	ENSMUSG00000002963	Pnkp	1810009G08Rik|PNK	polynucleotide kinase 3'- phosphatase	protein-coding	-2.05752322593321	-2.15521190974092	-2.16307242109104	-2.16952927915413	-2.17938029103484	-2.15350850414045	-2.16129297361887	-2.16837350464794	-0.683654500252594	0.846597994014493	1
Merged-chr8-106154213-2	chr8	106154113	106154313	+	969.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357319, intron 1 of 5)	B1_Mus1|SINE|Alu	3859.0	NM_001357319	192654.0	Mm.284770	NM_133792	ENSMUSG00000031903	Pla2g15	ACS|C87498|LLPL|Lpla2|Lypla3	phospholipase A2, group XV	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-119100498-3	chr9	119100358	119100558	+	840.544434	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2020.0	NM_177117	320256.0	Mm.110648	NM_177117	ENSMUSG00000038060	Dlec1	D630005C06Rik	deleted in lung and esophageal cancer 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-103228845-1	chr3	103228745	103228945	+	677.0	f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	-50448.0	NM_001079830	94093.0	Mm.195036	NM_053170	ENSMUSG00000033014	Trim33	8030451N04Rik|AI413936|Ecto|Tif1g	tripartite motif-containing 33	protein-coding	-1.84394445732197	-1.66821793943237	-1.67744661740803	-1.83023656412549	-1.84180220054941	-1.81142728226884	-1.82056668285334	-1.82887962050503	-1.53321557181896	0.663006632102188	1
Merged-chr14-33266806-2	chr14	33266706	33266906	+	750.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153800, intron 2 of 10)	intron (NM_153800, intron 2 of 10)	49983.0	NM_153800	239027.0	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70225781-2	chr11	70225681	70225881	+	755.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007528, exon 9 of 9)	3' UTR (NM_007528, exon 9 of 9)	4017.0	NM_007528	12029.0	Mm.12930	NM_007528	ENSMUSG00000000317	Bcl6b	Bazf	B cell CLL/lymphoma 6, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122888583-2	chr8	122888483	122888683	+	722.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 9 of 12)	intron (NM_001081379, intron 9 of 12)	40209.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	-0.514277026420303	-0.778207403506971	-0.0956792790509572	-0.784154387422975	-0.787814877354107	-0.7769395679013	-0.780823814601969	-0.783701879257098	-3.20153101767105	0.268781693623117	1
Merged-chr5-136253067-3	chr5	136252960	136253160	+	871.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291238, intron 18 of 22)	intron (NM_001291238, intron 18 of 22)	-8120.0	NM_018825	23921.0	Mm.425294	NM_018825	ENSMUSG00000005057	Sh2b2	Aps	SH2B adaptor protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-172504090-5	chr1	172503971	172504171	+	999.7999880000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178598, intron 1 of 4)	(GGGTG)n|Simple_repeat|Simple_repeat	3825.0	NM_178598	21346.0	Mm.271711	NM_178598	ENSMUSG00000026547	Tagln2	2700094C18Rik|SM22beta|Sm22B|Sm22a	transgelin 2	protein-coding	0.24430231479149	-0.0834697297140121	-0.265899307326118	-0.268794900637122	0.0796393500081196	-0.261273220516143	-0.0985420721887548	-0.268289995003368	-0.532814516876963	0.819182563610083	1
Merged-chr5-24394413-5	chr5	24394402	24394602	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029020, exon 1 of 16)	exon (NM_029020, exon 1 of 16)	346.0	NM_029020	74610.0	Mm.283914	NM_029020	ENSMUSG00000028973	Abcb8	4833412N02Rik|AA409895	ATP-binding cassette, sub-family B (MDR/TAP), member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-21314271-1	chr12	21314171	21314371	+	666.0	f1_balb.idr	intron (NM_018813, intron 17 of 17)	PB1D11|SINE|Alu	-2121.0	NM_026347	67732.0	Mm.335830	NM_026347	ENSMUSG00000062054	Iah1	1500019E20Rik|4833421E05Rik	isoamyl acetate-hydrolyzing esterase 1 homolog	protein-coding	1.51880612985878	0.984399644584083	1.77192918835554	1.15899783480072	1.90264045065824	1.72931700098426	1.89426380716564	0.955419715097419	0.919121970197286	0.461153611413734	0.920953234475195
Merged-chr3-126596264-4	chr3	126596127	126596327	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001293665)	promoter-TSS (NM_001293665)	-724.0	NM_001346636	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	5.32622730372552	5.43049145392907	5.72545947000236	5.9866883146227	5.79896662389501	5.56376735777146	5.66176742368119	5.54131341996479	0.00762020710171896	0.977103548862939	0.998431161219273
Merged-chr11-103374112-4	chr11	103374005	103374205	+	984.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183034, intron 7 of 11)	intron (NM_183034, intron 7 of 11)	-10413.0	NM_001205236	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-56887120-4	chr14	56886964	56887164	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360643, intron 1 of 24)	CpG-4519	221.0	NM_001360643	76007.0	Mm.31417	NM_029498	ENSMUSG00000021945	Zmym2	5830413P05Rik|FIM|MYM|RAMP|SCLL|Zfp198|Znf198	zinc finger, MYM-type 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70929118-1	chr14	70929018	70929218	+	627.0	f0_balb.idr	intron (NM_001302094, intron 3 of 7)	intron (NM_001302094, intron 3 of 7)	39011.0	NM_001302094	14586.0	Mm.32619	NM_008115	ENSMUSG00000022103	Gfra2	-	glial cell line derived neurotrophic factor family receptor alpha 2	protein-coding	0.846891517077079	0.367566266933065	0.841853722465903	0.353171944800654	1.25458190909052	0.369385510594627	0.714421802119782	0.354273427345179	0.592547617561469	0.747668342373599	1
Merged-chr2-69803005-4	chr2	69802905	69803105	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	13268.0	NM_028521	73373.0	Mm.9621	NM_028521	ENSMUSG00000027088	Phospho2	1700048E23Rik|AI661517|AU021728|AV006103|Phos2	phosphatase, orphan 2	protein-coding	5.73311902655887	5.82659717540652	5.22629789088386	5.16096332501223	4.72943308990879	4.95058061229237	5.19478981185851	3.51077444949091	-0.936162228437582	0.0117162576316566	0.121609250906731
Merged-chr13-97253996-2	chr13	97253896	97254096	+	708.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_007930)	TTS (NM_007930)	12891.0	NM_007930	13803.0	Mm.241073	NM_007930	ENSMUSG00000041773	Enc1	Nrpb|PIG10	ectodermal-neural cortex 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-143601140-2	chr7	143601040	143601240	+	932.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10B|LTR|ERVL	-1050.0	NM_013742	27267.0	Mm.125659	NM_013742	ENSMUSG00000010755	Cars	CA3	cysteinyl-tRNA synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-100187064-4	chr15	100186946	100187146	+	871.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172819, intron 18 of 32)	intron (NM_172819, intron 18 of 32)	990.0	NR_037311	100499528.0		NR_037311	ENSMUSG00000092752	Mir3473a	Mir3473|mir-3473a|mmu-mir-3473|mmu-mir-3473a	microRNA 3473a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84207231-2	chr8	84207131	84207331	+	817.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1287.0	NR_029740	387216.0		NR_029740	ENSMUSG00000065611	Mir23a	Mirn23a|mir-23a|mmu-mir-23a	microRNA 23a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-87258937-2	chr17	87258847	87259047	+	879.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_139295, intron 1 of 3)	intron (NM_139295, intron 1 of 3)	7000.0	NM_176808	193813.0	Mm.30251	NM_139295	ENSMUSG00000024150	Mcfd2	1810021C21Rik|F5f8d|Lman1ip|Sdnsf	multiple coagulation factor deficiency 2	protein-coding	0.718419431283834	1.90956055036006	0.967433909757631	1.20964106847327	1.13957839701777	0.577655079827274	0.564092102002857	0.552274441244748	-2.38334219164027	0.127005782649037	0.557629438969193
Merged-chr15-38285793-4	chr15	38285696	38285896	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	14104.0	NM_001357677	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118878709-1	chr9	118878609	118878809	+	645.0	f1_c57bl6.idr	intron (NM_001113514, intron 12 of 13)	intron (NM_001113514, intron 12 of 13)	-47827.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-46867157-2	chr14	46867056	46867256	+	631.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15809.0	NM_028966	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	1.55222903314795	1.96643877885193	0.915316529637927	1.53269603995706	1.34686839880909	1.65387913878752	0.918729957936452	1.2722334114937	-0.799816750564352	0.529575739816848	0.949753322320261
Merged-chr12-21316435-4	chr12	21316332	21316532	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026347)	promoter-TSS (NM_026347)	40.0	NM_026347	67732.0	Mm.335830	NM_026347	ENSMUSG00000062054	Iah1	1500019E20Rik|4833421E05Rik	isoamyl acetate-hydrolyzing esterase 1 homolog	protein-coding	6.56939063822892	6.57821525533918	6.34257771883195	6.02531982963237	6.95526386534006	6.70790598466156	6.36428865610285	6.3244397930699	0.236185117579004	0.286173866036005	0.790669838252385
Merged-chr18-80712545-4	chr18	80712439	80712639	+	849.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198429, intron 1 of 9)	CpG	532.0	NM_001164109	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-165647272-2	chr1	165647172	165647372	+	899.8333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-12731.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-55202756-2	chr13	55202656	55202856	+	616.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-7026.0	NM_008739	18193.0	Mm.168965	NM_008739	ENSMUSG00000021488	Nsd1	AI528500|KMT3B	nuclear receptor-binding SET-domain protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-62507872-4	chr10	62507781	62507981	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011157)	promoter-TSS (NM_011157)	-124.0	NM_011157	19073.0	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-75943737-4	chr18	75943636	75943836	+	780.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145356, intron 2 of 4)	MLT1A0|LTR|ERVL-MaLR	-115590.0	NM_001357506	207259.0	Mm.159332	NM_145356	ENSMUSG00000044646	Zbtb7c	B230208J24Rik|Kr-pok|Zbtb36	zinc finger and BTB domain containing 7C	protein-coding	2.65642241229542	3.492323462127	3.15843215249224	3.28601269341873	2.67927118595546	2.90128404760221	2.23926752215388	1.49066272730652	-1.3892132174432	0.0657510231997265	0.383945867788929
Merged-chr7-102553492-3	chr7	102553397	102553597	+	671.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_147101)	promoter-TSS (NM_147101)	-789.0	NM_147101	259105.0	Mm.424092	NM_147101	ENSMUSG00000073977	Olfr549	MOR31-3	olfactory receptor 549	protein-coding	-1.84249666652287	-1.81280314203583	-1.821782708929	-1.8291587925341	-1.69912265473888	-1.81085723243092	-1.81974993181089	-1.68654889582706	1.42917657148143	0.685329973313288	1
Merged-chr11-119378785-4	chr11	119378658	119378858	+	924.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178743, intron 15 of 16)	intron (NM_178743, intron 15 of 16)	-11714.0	NR_035453	100316690.0		NR_035453	ENSMUSG00000088015	Mir1932	mir-1932|mmu-mir-1932	microRNA 1932	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80105097-2	chr10	80104997	80105197	+	771.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 1 of 4)	ID_B1|SINE|B4	-2395.0	NM_001359637	216161.0	Mm.262102	NM_183426	ENSMUSG00000035673	Sbno2	BC019206|F730040C21|Sno|Stno	strawberry notch 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-131197056-2	chr2	131196956	131197156	+	606.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_023117, exon 15 of 16)	exon (NM_023117, exon 15 of 16)	10108.0	NM_001111075	12531.0	Mm.38444	NM_023117	ENSMUSG00000027330	Cdc25b	AI604853	cell division cycle 25B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-119088314-4	chr9	119088204	119088404	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001293648)	promoter-TSS (NM_001293648)	-43.0	NM_001293648	18799.0	Mm.23963	NM_019676	ENSMUSG00000010660	Plcd1	AW212592|C79986	phospholipase C, delta 1	protein-coding	5.38298492494725	4.54444110649624	5.54307087049987	4.38548696805028	4.87188648276379	4.83716232083653	4.18062470196088	3.56545287490223	-0.728775489814505	0.0875323939537674	0.454769195723427
Merged-chr3-63964761-4	chr3	63964649	63964849	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001331067)	promoter-TSS (NM_001331067)	-16.0	NM_015728	11416.0	Mm.135619	NM_015728	ENSMUSG00000027822	Slc33a1	AI315656|AI788741|Acatn|D630022N01Rik	solute carrier family 33 (acetyl-CoA transporter), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24728033-2	chr17	24727845	24728045	+	652.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163945, intron 1 of 9)	intron (NM_001163945, intron 1 of 9)	116.0	NM_001163945	66211.0	Mm.46198	NM_025425	ENSMUSG00000002500	Rpl3l	1110057H16Rik	ribosomal protein L3-like	protein-coding	2.12042132846473	2.24767804786032	2.82936353412048	3.03413644628488	1.49551211618588	2.26498629807925	1.34313842508307	2.98448913976291	-0.832811422380321	0.374456999888686	0.86721387654551
Merged-chr17-6982547-3	chr17	6982432	6982632	+	893.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026611, intron 2 of 8).2	intron (NM_026611, intron 2 of 8).2	3672.0	NM_026611	68195.0	Mm.181237	NM_026611	ENSMUSG00000094724	Rnaset2b	0610007O07Rik|4833423A10Rik|4930532K22Rik|C79750|RNASE6PL|Rnaset2	ribonuclease T2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-83543977-4	chr10	83543894	83544094	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033375)	promoter-TSS (NM_001033375)	53.0	NM_001033375	319277.0	Mm.491194	NM_001033375	ENSMUSG00000034560	Washc4	A230046K03Rik|AA589518|Kiaa1033|mKIAA1033	WASH complex subunit 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69793569-3	chr11	69793484	69793684	+	777.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009601, exon 6 of 11)	exon (NM_009601, exon 6 of 11)	2353.0	NM_009601	11443.0	Mm.86425	NM_009601	ENSMUSG00000041189	Chrnb1	Achr-2|Acrb	cholinergic receptor, nicotinic, beta polypeptide 1 (muscle)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-103003398-4	chr11	103003311	103003511	+	960.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026551, intron 1 of 4)	intron (NM_026551, intron 1 of 4)	-3490.0	NR_105896	102466988.0		NR_105896	ENSMUSG00000098613	Mir6931	Gm27303|mmu-mir-6931	microRNA 6931	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-121385297-4	chr9	121385194	121385394	+	896.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357970, intron 1 of 15)	intron (NM_001357970, intron 1 of 15)	2500.0	NM_001357969	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-85290864-4	chr13	85290757	85290957	+	950.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1371.0	NM_145452	218397.0	Mm.259653	NM_145452	ENSMUSG00000021549	Rasa1	Gap|RasGAP|Rasa	RAS p21 protein activator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64865450-3	chr5	64865339	64865539	+	627.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61916.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-154246584-2	chr4	154246380	154246580	+	983.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162977, intron 5 of 36)	intron (NM_001162977, intron 5 of 36)	53415.0	NM_001112744	230972.0	Mm.38481	NM_001112744	ENSMUSG00000029032	Arhgef16	-	Rho guanine nucleotide exchange factor (GEF) 16	protein-coding	3.3526892160441	2.99228854633281	2.1196034222171	1.48303206583647	1.16216314595016	1.59639202568428	2.13794908311417	2.8169998549714	-1.20394565504937	0.22656959983296	0.719679709199359
Merged-chr6-134640970-4	chr6	134640856	134641056	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026371)	promoter-TSS (NM_026371)	16.0	NM_026371	67774.0	Mm.41892	NM_026371	ENSMUSG00000042992	Borcs5	5830457J20Rik|AW124643|Loh12cr1	BLOC-1 related complex subunit 5	protein-coding	5.33008784733403	4.67335566312075	4.52206448628359	5.16820408612855	4.62438426937393	5.28602795973832	5.53355229402625	5.61132093495735	0.394335571104317	0.252263951335181	0.749998373630194
Merged-chr7-118104900-4	chr7	118104809	118105009	+	846.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_170669, exon 5 of 5)	3' UTR (NM_170669, exon 5 of 5)	11238.0	NM_170669	267019.0	Mm.288212	NM_170669	ENSMUSG00000008683	Rps15a	A630031B11Rik	ribosomal protein S15A	protein-coding	0.790949984750105	1.16921486732506	0.842647977227627	1.19721285767436	0.79581224638116	1.17930591095234	0.848123716611421	1.09455192815245	-0.125983138228215	0.926651687709591	1
Merged-chr10-128524835-2	chr10	128524735	128524935	+	931.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_011843, intron 1 of 30)	intron (NM_011843, intron 1 of 30)	1024.0	NM_011843	23943.0	Mm.66056	NM_011843	ENSMUSG00000025366	Esyt1	Fam62a|Mbc2|vp115	extended synaptotagmin-like protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-62648759-4	chr11	62648654	62648854	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198861)	promoter-TSS (NM_198861)	90.0	NM_175002	216829.0	Mm.295306	NM_175002	ENSMUSG00000048497	Mmgt2	AI852046	membrane magnesium transporter 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-92998780-1	chr13	92998680	92998880	+	590.0	f1_c57bl6.idr	Intergenic	Intergenic	-74524.0	NR_036451	100502942.0	Mm.441946	NM_177623	ENSMUSG00000114382	Gm4814	C920025J10|EG218444	predicted gene 4814	ncRNA	2.11828881957964	2.21445605235929	3.1115015536771	3.2781507503508	1.82520896583335	2.39685595930992	2.69540664807272	2.61199572756473	-0.741164961560725	0.355381202356353	0.853664850644233
Merged-chr10-67547428-2	chr10	67547328	67547528	+	573.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001005419, exon 1 of 1)	3' UTR (NM_001005419, exon 1 of 1)	1527.0	NM_001005419	211488.0	Mm.297250	NM_001005419	ENSMUSG00000057134	Ado	Gm237	2-aminoethanethiol (cysteamine) dioxygenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-31088925-4	chr17	31088851	31089051	+	994.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009593, intron 2 of 14)	intron (NM_009593, intron 2 of 14)	31257.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	1.1539707851167	2.0917031965121	1.22730001604181	1.86147003733797	1.86327566841078	1.26911424363804	1.70922751448669	1.20502747406372	-0.337006813522549	0.770324039143163	0.998431161219273
Merged-chr7-58677364-3	chr7	58677205	58677405	+	668.416687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009728, intron 1 of 20)	intron (NM_009728, intron 1 of 20)	19103.0	NM_009728	11982.0	Mm.135129	NM_009728	ENSMUSG00000025324	Atp10a	Atp10c|pfatp	ATPase, class V, type 10A	protein-coding	1.84478482764706	1.3133216437424	0.688759520034657	1.74716177244177	0.658852461310521	0.707664497804791	1.40956382085122	0.678700976888912	-2.23825853482112	0.150545430774128	0.602589676101411
Merged-chr2-6460407-3	chr2	6460283	6460483	+	810.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A0|LTR|ERVL-MaLR	107647.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128770775-2	chr2	128770690	128770890	+	936.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 8 of 18)	intron (NM_008587, intron 8 of 18)	-47513.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	3.01798378274452	2.53448769994297	2.00531858276555	1.75947276142391	2.46581449896473	3.4691609347287	1.59856055619815	1.54831944931779	0.210043142881353	0.822300788619159	0.998431161219273
Merged-chr4-107759081-2	chr4	107758981	107759181	+	887.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43178.0	NR_033496	16975.0	Mm.442134	NM_053073	ENSMUSG00000028613	Lrp8	4932703M08Rik|AA921429|AI848122|ApoER2|Lr8b	low density lipoprotein receptor-related protein 8, apolipoprotein e receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-25155972-4	chr9	25155871	25156071	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F|LTR|ERVL-MaLR	-4190.0	NM_020586	80517.0	Mm.142843	NM_020586	ENSMUSG00000008429	Herpud2	5031400M07Rik|AB041580	HERPUD family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-90060117-4	chr7	90060017	90060217	+	914.895874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30958.0	NR_110364	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125363236-1	chr6	125363136	125363336	+	895.0	f1_balb.idr	TTS (NM_011609)	TTS (NM_011609)	13513.0	NM_011609	21937.0	Mm.1258	NM_011609	ENSMUSG00000030341	Tnfrsf1a	CD120a|FPF|TNF-R|TNF-R-I|TNF-R1|TNF-R55|TNF-alphaR1|TNFAR|TNFR60|TNFRI|TNFRp55|TNFalpha-R1|Tnfr-2|Tnfr1|p55|p55-R	tumor necrosis factor receptor superfamily, member 1a	protein-coding	0.148215176531844	0.848761468277618	0.164715685652417	0.15855437001159	0.149762284813736	0.728071809872708	1.01783857761998	0.159634258856644	1.13171930622874	0.586268304061108	1
Merged-chr2-94407422-3	chr2	94407330	94407530	+	849.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355691)	promoter-TSS (NM_001355691)	723.0	NR_027831	66457.0	Mm.402557	NR_027831		2810002D19Rik	-	RIKEN cDNA 2810002D19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-189007819-4	chr1	189007724	189007924	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172650)	promoter-TSS (NM_172650)	16.0	NM_001359577	226823.0	Mm.209880	NM_172650	ENSMUSG00000026608	Kctd3	4930438A20Rik|9330185B06|E330032J19Rik|NY-REN-45	potassium channel tetramerisation domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-60286182-2	chr10	60286082	60286282	+	980.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001146124, intron 1 of 13)	intron (NM_001146124, intron 1 of 13)	1721.0	NM_001146124	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-84479612-2	chr3	84479509	84479709	+	923.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001205355)	promoter-TSS (NM_001205355)	-118.0	NM_001205355	229474.0	Mm.331107	NM_001033301	ENSMUSG00000041842	Fhdc1	6330505N24Rik|Gm126	FH2 domain containing 1	protein-coding	0.317869228655044	0.420377291762917	0.068775993658154	0.0646000851438018	0.432560742572191	0.0754153975686249	0.735960623908395	0.0653293832008334	1.00091932605119	0.628216114359118	1
Merged-chr13-49191120-5	chr13	49191028	49191228	+	912.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013610, intron 1 of 3)	intron (NM_013610, intron 1 of 3)	3581.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-29507834-4	chr6	29507712	29507912	+	892.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029985, intron 1 of 37)	CpG	140.0	NM_001029985	333088.0	Mm.332961	NM_001029985	ENSMUSG00000059022	Kcp	AW060220|CRIM-2|Crim2|Gm793|KCP-1	kielin/chordin-like protein	protein-coding	-0.0732351605738882	-0.182239812674745	-0.0361138159604662	0.173041174688383	-0.191454951238679	-0.0139141095308742	-0.184782755107269	0.17802100882363	-0.203113605045451	0.925055505978359	1
Merged-chr1-61376823-2	chr1	61376723	61376923	+	961.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1609.0	NR_040483	77341.0	Mm.402964	NR_040483	ENSMUSG00000085447	9530026F06Rik	-	RIKEN cDNA 9530026F06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30094370-2	chr2	30094270	30094470	+	590.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025428)	promoter-TSS (NM_025428)	-735.0	NM_001037762	66220.0	Mm.22538	NM_025428	ENSMUSG00000015335	Zdhhc12	1190004A01Rik	zinc finger, DHHC domain containing 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-85196428-2	chr10	85196328	85196528	+	639.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11374.0	NM_007771	12952.0	Mm.26237	NM_007771	ENSMUSG00000020038	Cry1	AU020726|AU021000|Phll1	cryptochrome 1 (photolyase-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-53710829-4	chr6	53710729	53710929	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	109996.0	NM_025817	66873.0	Mm.422727	NM_025817	ENSMUSG00000043496	Tril	1200009O22Rik|AI316813|mKIAA0644	TLR4 interactor with leucine-rich repeats	protein-coding	3.74430407450892	4.34033023664539	4.25714071533794	3.36060747135064	3.11749610242073	3.40235585020095	3.48745252166245	4.01210605225104	-0.623015954436793	0.228737971980515	0.722016539443097
Merged-chr7-19562358-4	chr7	19562189	19562389	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_199149, exon 1 of 13)	5' UTR (NM_199149, exon 1 of 13)	109.0	NM_199149	232947.0	Mm.219662	NM_199149	ENSMUSG00000051403	Ppp1r37	Gm158|Lrrc68	protein phosphatase 1, regulatory subunit 37	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-67430737-1	chr3	67430637	67430837	+	555.0	f1_balb.idr	intron (NM_138591, intron 1 of 17)	intron (NM_138591, intron 1 of 17)	622.0	NM_138591	28030.0	Mm.122466	NM_138591	ENSMUSG00000027774	Gfm1	AW545374|D3Wsu133e|Gfm	G elongation factor, mitochondrial 1	protein-coding	-0.321706408501897	-0.309597629195798	-0.313578847375603	-0.316641043582431	-0.0605858280845453	-0.30869830139879	0.243739069316733	0.0972717857249603	3.61522796357211	0.134984388894243	1
Merged-chr13-36207092-3	chr13	36206989	36207189	+	688.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024274, intron 2 of 6)	intron (NM_024274, intron 2 of 6)	89446.0	NM_001039189	69955.0	Mm.70690	NM_024274	ENSMUSG00000021420	Fars2	Fars1|pheRS	phenylalanine-tRNA synthetase 2 (mitochondrial)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127634291-2	chr10	127634115	127634315	+	991.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-8771.0	NM_009284	20852.0	Mm.121721	NM_009284	ENSMUSG00000002147	Stat6	-	signal transducer and activator of transcription 6	protein-coding	-1.8418762459921	-1.8125357239735	-1.82140854000656	-1.82869693527674	-1.56059678980999	-1.8106129477253	-1.81939992894326	-1.82739231600805	1.3620893379502	0.699511506488145	1
Merged-chr6-120152402-2	chr6	120152302	120152502	+	686.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016718, intron 1 of 3)	intron (NM_016718, intron 1 of 3)	-41421.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-151632276-5	chr2	151632196	151632396	+	717.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291076, intron 1 of 5)	CpG-8656	297.0	NM_198214	241727.0	Mm.39312	NM_198214	ENSMUSG00000027457	Snph	6430515A01|AW045671|AW556958|AW743098|mKIAA0374	syntaphilin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-41070973-6	chr9	41070851	41071051	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176860, intron 1 of 13)	intron (NM_176860, intron 1 of 13)	8555.0	NM_001357412	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	3.31715178349696	2.27828220611189	3.65687420273967	3.18237692122679	3.04260029768198	2.67974110705787	4.11996253299687	3.19889277718738	0.285359751355559	0.663708385012711	0.991657818949578
Merged-chr5-139388345-4	chr5	139388238	139388438	+	949.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030258, intron 1 of 1)	intron (NM_030258, intron 1 of 1)	-1566.0	NM_001038703	80290.0	Mm.270003	NM_030258	ENSMUSG00000044197	Gpr146	BC003323|D830046C22Rik|PGR8	G protein-coupled receptor 146	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-125600747-4	chr7	125600646	125600846	+	938.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2683.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	3.5859286629121	4.75352074419227	3.45798001455688	4.16094485291201	3.93340701240871	4.90659023981289	3.76562398397233	4.23472469846285	0.2583608787954	0.59758129853603	0.971981563164
Merged-chr4-131907717-2	chr4	131907617	131907817	+	696.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_102393, intron 4 of 4)	intron (NR_102393, intron 4 of 4)	12312.0	NR_102394	545681.0	Mm.2478	NR_102393	ENSMUSG00000085667	Gm12992	-	predicted gene 12992	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101846178-2	chr15	101846078	101846278	+	866.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008473, exon 9 of 9)	exon (NM_008473, exon 9 of 9)	4608.0	NM_008473	16678.0	Mm.183137	NM_008473	ENSMUSG00000046834	Krt1	Krt-2.1|Krt2-1|Krt86	keratin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-20674313-3	chr16	20674273	20674473	+	895.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304432, intron 3 of 31)	intron (NM_001304432, intron 3 of 31)	1646.0	NM_001304432	208643.0	Mm.260256	NM_145941	ENSMUSG00000045983	Eif4g1	E030015G23Rik|eIF-4-gamma 1|eIF-4G 1|eIF-4G1|eIF4GI	eukaryotic translation initiation factor 4, gamma 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-64725423-3	chr14	64725334	64725534	+	800.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081177, intron 8 of 39)	LTR67B|LTR|ERVL	72903.0	NM_001081177	16554.0	Mm.23611	NM_001081177	ENSMUSG00000060012	Kif13b	5330429L19Rik|6030414C01|AI429803|C130021D12Rik|GAKIN	kinesin family member 13B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-81037317-4	chr5	81037240	81037440	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198702, intron 1 of 27)	intron (NM_198702, intron 1 of 27)	15747.0	NM_198702	319387.0	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-11794449-4	chr18	11794390	11794590	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44784.0	NM_001146287	63955.0	Mm.40717	NM_022021	ENSMUSG00000040957	Cables1	Cables|ik3-1	CDK5 and Abl enzyme substrate 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-69382957-4	chr13	69382842	69383042	+	874.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	150922.0	NM_198600	210106.0	Mm.315959	NM_198600	ENSMUSG00000034575	Papd7	LAK-1|POLK|Pols|TRF4|TRF4-1	PAP associated domain containing 7	protein-coding	4.47887845682241	5.67881897253748	4.50961652747131	4.23239011755527	3.74540045340653	4.20433705490523	3.74404023165689	4.75844406382568	-0.844984375361961	0.0660084467849029	0.384983479748088
Merged-chr10-84514356-3	chr10	84514271	84514471	+	875.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19517.0	NM_175451	216197.0	Mm.334999	NM_175451	ENSMUSG00000046841	Ckap4	5630400A09Rik|CLIMP-63|P63	cytoskeleton-associated protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97574499-2	chr11	97574399	97574599	+	621.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_018873, intron 1 of 19)	intron (NM_018873, intron 1 of 19)	627.0	NM_018873	56013.0	Mm.342665	NM_018873	ENSMUSG00000038453	Srcin1	P140|SNIP|mKIAA1684|p140Cap	SRC kinase signaling inhibitor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-78936524-2	chr17	78936434	78936634	+	822.25	f0_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028611)	promoter-TSS (NM_028611)	536.0	NM_001024806	12607.0	Mm.24169	NM_009882	ENSMUSG00000024081	Cebpz	AI848081|CBF2|Cbf|Cebpa-rs1	CCAAT/enhancer binding protein zeta	protein-coding	0.306422584522129	0.160038883098107	1.28605667251179	0.144188644775474	0.311725897864051	0.881729673324135	0.153115964500126	0.145409367193787	-0.87595991882471	0.649296337718028	1
Merged-chr11-4536826-4	chr11	4536743	4536943	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028860, intron 1 of 17)	PB1D10|SINE|Alu	57972.0	NM_028860	74302.0	Mm.425669	NM_028860	ENSMUSG00000034354	Mtmr3	1700092A20Rik|AI255150|AW557713|FYVE-DSP1|ZFYVE10|mKIAA0371	myotubularin related protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91740723-2	chr16	91740623	91740823	+	998.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110276, intron 1 of 15)	intron (NM_001110276, intron 1 of 15)	11352.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-155052327-1	chr2	155052227	155052427	+	543.0	f1_balb.idr	Intergenic	Intergenic	22170.0	NM_016661	269378.0	Mm.330692	NM_016661	ENSMUSG00000027597	Ahcy	AA987153|AL024110|CuBP|SAHH	S-adenosylhomocysteine hydrolase	protein-coding	1.10792674977967	0.815549293235008	0.799482999861038	1.16918749877495	1.11723154588271	1.80885999395653	2.00594446351296	1.32456696100169	2.541817336286	0.0583054418427292	0.356917478410832
Merged-chr5-8622483-6	chr5	8622384	8622584	+	909.861084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011076, intron 2 of 29)	CpG	468.0	NM_001347311	242819.0	Mm.332192	NM_198620	ENSMUSG00000040570	Rundc3b	Gm440	RUN domain containing 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21169095-4	chr9	21169024	21169224	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183408, intron 1 of 14)	intron (NM_183408, intron 1 of 14)	3410.0	NM_183408	18577.0	Mm.191749	NM_019798	ENSMUSG00000032177	Pde4a	D9Ertd60e|Dpde2	phosphodiesterase 4A, cAMP specific	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81573186-2	chr10	81573086	81573286	+	634.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ZP3AR|Satellite|Satellite	-2101.0	NM_019725	21886.0	Mm.38608	NM_019725	ENSMUSG00000034771	Tle2	Grg2|mKIAA4188	transducin-like enhancer of split 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-101924455-4	chr3	101924352	101924552	+	986.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039371)	promoter-TSS (NM_001039371)	1.0	NM_001039371	242126.0	Mm.90204	NM_001039371	ENSMUSG00000033147	Slc22a15	2610034P21Rik|4930477M19|A530052I06Rik|BB219042	solute carrier family 22 (organic anion/cation transporter), member 15	protein-coding	3.43956199296171	3.8413435640717	3.78278539311275	3.40612903161345	3.09818877916646	2.1143573436046	3.60632908582288	3.42340947656572	-0.704092076625976	0.2356027970345	0.731942609741049
Merged-chr6-31233459-4	chr6	31233359	31233559	+	881.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040260, intron 1 of 5)	L3|LINE|CR1	13108.0	NR_040259	73652.0	Mm.441297	NR_040257	ENSMUSG00000087380	2210408F21Rik	-	RIKEN cDNA 2210408F21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-5018897-1	chr1	5018797	5018997	+	545.0	f0_balb.idr	promoter-TSS (NM_001290372)	promoter-TSS (NM_001290372)	-163.0	NM_001290372	58175.0	Mm.103771	NM_021374	ENSMUSG00000002459	Rgs20	2900073E09Rik|Rgsz1	regulator of G-protein signaling 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-37997295-4	chr1	37997169	37997369	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198303)	promoter-TSS (NM_198303)	-61.0	NM_172054	98258.0	Mm.28438	NM_172054	ENSMUSG00000058407	Txndc9	AI098020|APACD	thioredoxin domain containing 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-136739745-2	chr1	136739645	136739845	+	709.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	43534.0	NR_037986	100503474.0	Mm.428276	NR_037986		Platr22	Gm16880	pluripotency associated transcript 22	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117147263-2	chr11	117147163	117147363	+	644.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001166506, exon 8 of 16)	exon (NM_001166506, exon 8 of 16)	32091.0	NM_001166506	74136.0	Mm.272312	NM_028777	ENSMUSG00000020823	Sec14l1	1200017E04Rik|2810012L19Rik|Naa-35	SEC14-like lipid binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75336876-2	chr11	75336776	75336976	+	803.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_026653, intron 4 of 16)	MTEa|LTR|ERVL-MaLR	11507.0	NM_001164223	68275.0	Mm.102574	NM_026653	ENSMUSG00000000751	Rpa1	5031405K23Rik|70kDa|AA589576|AW557552|RF-A|RP-A|Rpa	replication protein A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-90062077-2	chr13	90061977	90062177	+	871.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_028012, exon 3 of 8)	exon (NM_028012, exon 3 of 8)	27531.0	NM_028012	108138.0	Mm.37531	NM_028012	ENSMUSG00000021615	Xrcc4	2310057B22Rik|AW413319|AW545101	X-ray repair complementing defective repair in Chinese hamster cells 4	protein-coding	1.53125919599386	1.96253353531407	1.19927759838992	0.967037099457645	1.29021889442092	1.97854476712501	1.38963875539725	1.73956715574858	0.499810934513987	0.673297481381195	0.99440487726309
Merged-chr11-49985700-2	chr11	49985600	49985800	+	885.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-39631.0	NM_021540	59044.0	Mm.359004	NM_021540	ENSMUSG00000020376	Rnf130	2510042A13Rik|G1RZFP|G1rp|GOLIATH|GP	ring finger protein 130	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-48324476-4	chr17	48324384	48324584	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177083, exon 6 of 6)	3' UTR (NM_177083, exon 6 of 6)	8322.0	NM_177083	320148.0	Mm.123455	NM_177083	ENSMUSG00000043740	B430306N03Rik	Treml6	RIKEN cDNA B430306N03 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-128004595-4	chr1	128004488	128004688	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285945, intron 8 of 20)	B4A|SINE|B4	97883.0	NM_027678	226409.0	Mm.425048	NM_027678	ENSMUSG00000036086	Zranb3	4933425L19Rik|AH2|AI316834|C730006D09	zinc finger, RAN-binding domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-129399293-3	chr6	129399213	129399413	+	897.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001204253, intron 1 of 3)	RLTR21|LTR|ERVK	2016.0	NM_001204239	56760.0	Mm.30700	NM_019985	ENSMUSG00000030159	Clec1b	1810061I13Rik|Clec-2|Clec2	C-type lectin domain family 1, member b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152674032-4	chr1	152673935	152674135	+	875.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346118, intron 2 of 18)	intron (NM_001346118, intron 2 of 18)	-48818.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-113624359-3	chr5	113624222	113624422	+	847.866699	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008153, intron 1 of 2)	intron (NM_008153, intron 1 of 2)	19281.0	NM_001359060	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133019041-2	chr4	133018941	133019141	+	613.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146155, intron 2 of 6)	IMPB_01|Satellite|Satellite	7535.0	NM_146155	230793.0	Mm.31816	NM_146155	ENSMUSG00000037692	Ahdc1	D030015G18Rik	AT hook, DNA binding motif, containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-137913550-5	chr4	137913477	137913677	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199307, intron 2 of 19)	CpG	51340.0	NM_199307	230857.0	Mm.401062	NM_199307	ENSMUSG00000057530	Ece1	AW322500|ECE-1|ECE-1a|ECE-1b|ECE-1d	endothelin converting enzyme 1	protein-coding	1.88746127046851	2.72190306297528	2.03504914314641	2.25008825148056	2.03628105050047	2.27265616797588	2.82282982071912	2.37498509836654	0.341590365182144	0.684122143022091	0.996533206832645
Merged-chr17-5659636-2	chr17	5659536	5659736	+	546.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 2 of 8)	intron (NM_146073, intron 2 of 8)	-139021.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-86283323-1	chr15	86283223	86283423	+	547.0	f0_balb.idr	intron (NM_001358062, intron 1 of 9)	intron (NM_001358062, intron 1 of 9)	5648.0	NM_001358062	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28392824-4	chr7	28392716	28392916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026042)	promoter-TSS (NM_026042)	-126.0	NM_026042	67224.0	Mm.41647	NM_026042	ENSMUSG00000003444	Med29	2810405O22Rik|AU020902|Ixl	mediator complex subunit 29	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-61803932-2	chr14	61803825	61804025	+	686.0	f0_balb.idr|f1_balb.idr	Intergenic	MLT1K|LTR|ERVL-MaLR	-121552.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	2.60341705284197	2.31758872388618	1.44160740186607	2.16755818786392	2.16770783540499	2.64433384282346	1.19145318204135	1.16442638866546	-0.555210439668173	0.611403199163351	0.975644971429068
Merged-chr12-34486172-4	chr12	34486051	34486251	+	854.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271386, intron 4 of 27)	intron (NM_001271386, intron 4 of 27)	42738.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6141592-4	chr19	6141491	6141691	+	971.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019722)	promoter-TSS (NM_019722)	-454.0	NM_019722	56327.0	Mm.21071	NM_019722	ENSMUSG00000024944	Arl2	2610009M23Rik|AI115441|AW553335	ADP-ribosylation factor-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-149166714-4	chr4	149166614	149166814	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356332)	promoter-TSS (NM_001356332)	-9.0	NM_001081274	110208.0	Mm.252080	NM_025801	ENSMUSG00000028961	Pgd	0610042A05Rik|AU019875|C78335	phosphogluconate dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-152653314-1	chr2	152653214	152653414	+	820.0	f0_balb.idr	Intergenic	Intergenic	-16147.0	NM_010376	14950.0	Mm.277327	NM_010376	ENSMUSG00000019188	H13	1200006O09Rik|4930443L17Rik|5031424B04Rik|AV020344|H-13|Hm13|PSL3|Spp	histocompatibility 13	protein-coding	1.04340237205298	1.48042946513376	1.95021813737931	1.24771834864768	1.32719162292746	0.920124141548535	1.56981574599331	1.3945633967064	-0.570770532397941	0.644310254256993	0.983599257431767
Merged-chr5-140748559-4	chr5	140748452	140748652	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173405, intron 5 of 7)	intron (NM_173405, intron 5 of 7)	24425.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-63498715-2	chr17	63498615	63498815	+	658.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_015794, intron 1 of 8)	intron (NM_015794, intron 1 of 8)	1865.0	NM_015794	50758.0	Mm.136366	NM_015794	ENSMUSG00000023965	Fbxl17	6330576B01Rik|AI452053|BB073797|C130023C01Rik|Fbx13|Fbxo13	F-box and leucine-rich repeat protein 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-147227489-2	chr5	147227389	147227589	+	594.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38793.0	NM_008178	14842.0	Mm.4797	NM_008178	ENSMUSG00000053129	Gsx1	Gsh-1|Gsh1	GS homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-134703687-3	chr1	134703576	134703776	+	794.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009307, intron 2 of 9)	intron (NM_009307, intron 2 of 9)	-5624.0	NM_001355726	20980.0	Mm.5102	NM_009307	ENSMUSG00000026452	Syt2	IP4BP|R74640|mKIAA4194|sytII	synaptotagmin II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83570401-4	chr11	83570293	83570493	+	818.145813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8243.0	NM_011338	20308.0	Mm.416125	NM_011338	ENSMUSG00000019122	Ccl9	CCF18|MRP-2|Scya10|Scya9	chemokine (C-C motif) ligand 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-86678519-3	chr14	86678391	86678591	+	959.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019670, intron 27 of 27)	intron (NM_019670, intron 27 of 27)	432521.0	NR_040457	75155.0	Mm.399239	NR_040457	ENSMUSG00000115271	4930529K09Rik	4930507G21Rik	RIKEN cDNA 4930529K09 gene	ncRNA	2.49424253047391	1.49347361198548	2.15204653203039	2.63721046994047	2.40524691217838	3.70549817467773	3.41113687450588	2.53560752861112	1.61831750444893	0.0426653289897397	0.29605098730517
Merged-chr11-65787811-2	chr11	65787711	65787911	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001316368, intron 1 of 10)	CpG	548.0	NM_009157	26398.0	Mm.412922	NM_009157	ENSMUSG00000033352	Map2k4	JNKK1|MEK4|MKK4|PRKMK4|Sek1|Serk1	mitogen-activated protein kinase kinase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-156238050-2	chr4	156237950	156238150	+	573.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021303, intron 4 of 18)	intron (NM_021303, intron 4 of 18)	2040.0	NM_021303	57741.0	Mm.423051	NM_021303	ENSMUSG00000095567	Noc2l	AA410003|AF155546|NIR	NOC2 like nucleolar associated transcriptional repressor	protein-coding	0.0215730545271152	0.053650237712254	1.18533066526149	0.0353180272733715	0.023645593480073	0.0559304583826174	1.20295982217995	0.036739596264249	0.041119013485609	0.984943294117709	1
Merged-chr8-61896960-4	chr8	61896853	61897053	+	898.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293772, intron 1 of 21)	intron (NM_001293772, intron 1 of 21)	5737.0	NM_001081390	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-143702892-4	chr1	143702787	143702987	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145991)	promoter-TSS (NM_145991)	6.0	NM_145991	214498.0	Mm.156727	NM_145991	ENSMUSG00000026361	Cdc73	8430414L16Rik|C130030P16Rik|C81219|Hrpt2	cell division cycle 73, Paf1/RNA polymerase II complex component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70893781-4	chr8	70893684	70893884	+	918.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_029751)	TTS (NM_029751)	-1027.0	NM_053248	114479.0	Mm.172923	NM_053248	ENSMUSG00000000792	Slc5a5	NIS	solute carrier family 5 (sodium iodide symporter), member 5	protein-coding	2.94997592383446	2.66166285846241	2.56816204139209	4.04766338726003	2.61267095411993	2.68206830840682	2.07556662838522	2.95324459376211	-1.0663551145259	0.14451744108996	0.594079576814987
Merged-chr11-79710236-2	chr11	79710136	79710336	+	624.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1733.0	NR_029579	387188.0		NR_029579	ENSMUSG00000065395	Mir193a	Mir193|Mirn193|mir-193a|mmu-mir-193|mmu-mir-193a	microRNA 193a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-55820337-4	chr16	55820237	55820437	+	993.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159395, intron 2 of 12)	intron (NM_001159395, intron 2 of 12)	1801.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115647601-2	chr11	115647501	115647701	+	901.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001313936, intron 4 of 5)	intron (NM_001313936, intron 4 of 5)	-19306.0	NM_001252395	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-56407564-3	chr18	56407473	56407673	+	765.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360917, intron 1 of 13)	intron (NM_001360917, intron 1 of 13)	7233.0	NM_001360917	107022.0	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|Gramd2b|NS3TP2	GRAM domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-60668166-3	chr13	60668064	60668264	+	868.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	MLT1J|LTR|ERVL-MaLR	65953.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-33618040-4	chr8	33617946	33618146	+	858.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017374, intron 6 of 6)	B3|SINE|B2	18425.0	NM_017374	19053.0	Mm.29301	NM_017374	ENSMUSG00000009630	Ppp2cb	AI115466|D8Ertd766e|PP2Ac	protein phosphatase 2 (formerly 2A), catalytic subunit, beta isoform	protein-coding	1.23465081366516	0.827989808894186	1.47682493661069	1.42969951605682	1.55668368301419	0.831150549781603	1.88772003370861	0.804692858852621	0.38106154615066	0.787579014322317	0.998431161219273
Merged-chr17-8158793-5	chr17	8158502	8158702	+	884.8666380000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-6916.0	NM_001197046	75296.0	Mm.227250	NM_201230	ENSMUSG00000069135	Fgfr1op	4930553O10Rik|FOP	Fgfr1 oncogene partner	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-14892831-4	chr8	14892720	14892920	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012000, intron 1 of 2)	intron (NM_012000, intron 1 of 2)	4284.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-52358405-2	chr11	52358305	52358505	+	545.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2457.0	NM_011694	22333.0	Mm.3555	NM_011694	ENSMUSG00000020402	Vdac1	AL033343|Vdac5|mVDAC1|mVDAC5	voltage-dependent anion channel 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-72871465-3	chr15	72871367	72871567	+	828.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164642, intron 16 of 16)	intron (NM_001164642, intron 16 of 16)	-61143.0	NR_002864	353342.0	Mm.440245	NR_002864	ENSMUSG00000106847	Peg13	-	paternally expressed 13	ncRNA	1.85446788369523	1.26948021002001	1.01812715260229	1.52538558954045	1.95139297694247	1.47199119876568	1.24282815351567	2.13556205075694	0.943085276231113	0.421853917843255	0.900322118218157
Merged-chr15-78808263-1	chr15	78808163	78808363	+	762.0	f1_c57bl6.idr	Intergenic	Intergenic	-5221.0	NM_130859	105844.0	Mm.17629	NM_130859	ENSMUSG00000033170	Card10	AI449026|Bimp1|Carma3	caspase recruitment domain family, member 10	protein-coding	-0.85899884913904	-0.221460368678537	-0.852478112284837	-0.854929856228682	-0.579128496032964	-0.844249204911309	-0.851777156584519	-0.854501574186478	-1.3284213184086	0.662269550112928	1
Merged-chr11-46488383-3	chr11	46488280	46488480	+	866.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33449.0	NM_134250	171285.0	Mm.72168	NM_134250	ENSMUSG00000020399	Havcr2	TIM-3|Tim3|Timd3	hepatitis A virus cellular receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-131820342-3	chr2	131820283	131820483	+	710.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_029381, exon 3 of 3)	non-coding (NR_029381, exon 3 of 3)	27273.0	NR_029381	414081.0	Mm.246905	NR_029381	ENSMUSG00000086822	5330413P13Rik	-	RIKEN cDNA 5330413P13 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-60745840-3	chr1	60745769	60745969	+	801.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007642)	promoter-TSS (NM_007642)	-519.0	NM_007642	12487.0	Mm.255003	NM_007642	ENSMUSG00000026012	Cd28	-	CD28 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-63893657-2	chr7	63893557	63893757	+	689.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021366, intron 1 of 1)	intron (NM_021366, intron 1 of 1)	-23200.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135363692-2	chr5	135363592	135363792	+	607.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_178240, intron 2 of 5)	intron (NM_178240, intron 2 of 5)	-6261.0	NM_001359617	100609.0	Mm.281189	NM_145414	ENSMUSG00000000916	Nsun5	9830109N13Rik|AI326939|Nol1r|Wbscr20|Wbscr20a	NOL1/NOP2/Sun domain family, member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47332809-1	chr17	47332709	47332909	+	725.0	f1_c57bl6.idr	intron (NM_001097623, intron 14 of 19)	B2_Mm2|SINE|B2	-36078.0	NM_001146212	64657.0	Mm.216250	NM_183086	ENSMUSG00000034729	Mrps10	1110038B19Rik|AW743084|Rpms10	mitochondrial ribosomal protein S10	protein-coding	0.302161662070443	0.246615466320293	0.0506090040228518	0.0463968251160944	0.515200755154567	0.057301907552688	0.0518133603268101	0.762162299629114	1.70906951556362	0.414584662974929	1
Merged-chr10-9071764-3	chr10	9071664	9071864	+	813.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-185694.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3579930-3	chr19	3579849	3580049	+	645.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4200.0	NM_028999	52036.0	Mm.284686	NM_028999	ENSMUSG00000024908	Ppp6r3	4930528G08Rik|9130026N02Rik|D19Bwg1430e|D19Ertd703e|Pp6r3|Ppcs3|Pptcs3|Sapl|Saps3|mKIAA1558	protein phosphatase 6, regulatory subunit 3	protein-coding	2.85207365863811	2.2029500240863	2.54514257313838	1.44590890266019	2.73045577604669	2.96741786864384	2.56502115070344	2.69256400336323	0.763119489637989	0.35244814382856	0.852440430652142
Merged-chr1-165683536-4	chr1	165683439	165683639	+	765.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038846, intron 1 of 5)	B3A|SINE|B2	24555.0	NM_001038846	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-84466936-3	chr9	84466828	84467028	+	819.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-307470.0	NR_040739	75253.0	Mm.401984	NR_040739	ENSMUSG00000099724	4930554C24Rik	-	RIKEN cDNA 4930554C24 gene	ncRNA	1.06636538470742	1.81887423344604	2.32117561807478	0.702163812578526	0.896810884910215	0.742818189035839	1.64175064064443	0.705005100914666	-1.84891806955798	0.191493431163119	0.66975154922656
Merged-chr11-57980495-4	chr11	57980409	57980609	+	897.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28555.0	NM_028451	73158.0	Mm.248843	NM_028451	ENSMUSG00000037331	Larp1	1810024J12Rik|3110040D16Rik|Larp|mKIAA0731	La ribonucleoprotein domain family, member 1	protein-coding	3.97990758855102	3.86480363554823	4.82059638556674	3.90469564622868	3.96134998819817	1.91916336885408	4.04458743541727	3.86052561727208	-0.730353013630134	0.203159282633646	0.68946966048609
Merged-chr11-74830438-4	chr11	74830340	74830540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010813)	promoter-TSS (NM_010813)	-484.0	NM_010813	17428.0	Mm.3759	NM_010813	ENSMUSG00000000282	Mnt	Rox|bHLHd3	max binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167497478-4	chr2	167497345	167497545	+	953.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030743, intron 1 of 7)	B3|SINE|B2	-4571.0	NM_001356523	263876.0	Mm.34342	NM_170756	ENSMUSG00000047030	Spata2	AI504642|mKIAA0757	spermatogenesis associated 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-37973890-2	chr15	37973790	37973990	+	671.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001112721, intron 54 of 58)	intron (NM_001112721, intron 54 of 58)	-12835.0	NM_199476	382985.0	Mm.24738	NM_199476	ENSMUSG00000022292	Rrm2b	p53R2	ribonucleotide reductase M2 B (TP53 inducible)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-144893591-5	chr4	144893553	144893753	+	907.0399779999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001172424, exon 2 of 7)	exon (NM_001172424, exon 2 of 7)	516.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6296758-4	chr19	6296637	6296837	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010119, intron 3 of 4)	intron (NM_010119, intron 3 of 4)	-9720.0	NM_001033342	240505.0	Mm.329622	NM_001033342	ENSMUSG00000024769	Cdc42bpg	BC046418|MRCKgamma	CDC42 binding protein kinase gamma (DMPK-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-25891213-2	chr15	25891113	25891313	+	584.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001034851, intron 2 of 8)	intron (NM_001034851, intron 2 of 8)	-42339.0	NM_001277318	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167889201-2	chr2	167889101	167889301	+	885.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43126.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44325405-3	chr9	44325284	44325484	+	765.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1461.0	NM_007875	13478.0	Mm.18353	NM_007875	ENSMUSG00000032123	Dpagt1	AU021132|Dpagt2|GPT|Gnpta	dolichyl-phosphate (UDP-N-acetylglucosamine) acetylglucosaminephosphotransferase 1 (GlcNAc-1-P transferase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191874604-1	chr1	191874504	191874704	+	629.0	f1_balb.idr	Intergenic	Intergenic	-32177.0	NM_009579	22782.0	Mm.9024	NM_009579	ENSMUSG00000037434	Slc30a1	AI839647|C130040I11Rik|Znt1	solute carrier family 30 (zinc transporter), member 1	protein-coding	-0.0819888162973574	-0.0598098320885843	-0.0669902748280623	1.0528114750901	0.0915367399891713	-0.0582021959568576	0.463928378347257	-0.0716049212077816	-1.23319833588595	0.574471365772925	1
Merged-chr7-141444115-4	chr7	141444022	141444222	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360523)	promoter-TSS (NM_001360523)	-97.0	NR_153591	57913.0	Mm.334321	NM_022654	ENSMUSG00000025507	Pidd1	1200011D09Rik|AU042446|Lrdd|Pidd	p53 induced death domain protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-59634400-2	chr11	59634300	59634500	+	549.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21434.0	NM_001011740	257886.0	Mm.457883	NM_001011740	ENSMUSG00000044061	Olfr225	MOR256-51	olfactory receptor 225	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-96758034-4	chr15	96757961	96758161	+	963.94165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58333.0	NM_175121	67760.0	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-86547468-3	chr6	86547349	86547549	+	789.799988	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_037961, intron 3 of 4)	intron (NR_037961, intron 3 of 4)	20048.0	NR_037961	72012.0	Mm.349174	NR_037960	ENSMUSG00000097048	1600020E01Rik	-	RIKEN cDNA 1600020E01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-42373074-4	chr6	42372887	42373087	+	910.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023580, intron 1 of 17)	intron (NM_023580, intron 1 of 17)	281.0	NM_023580	13835.0	Mm.133330	NM_023580	ENSMUSG00000029859	Epha1	5730453L17Rik|AL033318|Eph|Esk	Eph receptor A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-104231396-3	chr7	104231295	104231495	+	814.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013616, intron 5 of 7)	intron (NM_001013616, intron 5 of 7)	12600.0	NM_001013616	94088.0	Mm.274843	NM_001013616	ENSMUSG00000072244	Trim6	C430046K18Rik|D7Ertd684e	tripartite motif-containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-27645856-2	chr15	27645756	27645956	+	586.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15163.0	NM_001013792	432940.0	Mm.309164	NM_001013792	ENSMUSG00000046034	Otulin	C79097|Fam105b|m3Sapc|m7-1Sapc	OTU deubiquitinase with linear linkage specificity	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-108602335-1	chr9	108602235	108602435	+	900.0	f1_c57bl6.idr	TTS (NM_011790)	TTS (NM_011790)	-4723.0	NR_151688	74443.0	Mm.226534	NM_028944	ENSMUSG00000006675	P4htm	4933406E20Rik|AI853847|BB128974|HIF-PH4|HPH-4|P4H-TM|Ph-4	prolyl 4-hydroxylase, transmembrane (endoplasmic reticulum)	protein-coding	-1.84325445856195	-1.66978859456726	-1.82223972418281	-1.82972291212587	-1.69779858607314	-1.8111556044277	-1.82017743014771	-1.82838342506187	0.037684011990387	0.991491645451152	1
Merged-chr15-53345640-4	chr15	53345500	53345700	+	856.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010162, exon 1 of 11)	5' UTR (NM_010162, exon 1 of 11)	583.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-43444036-4	chr7	43443943	43444143	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026695)	promoter-TSS (NM_026695)	-29.0	NM_026695	110826.0	Mm.30200	NM_026695	ENSMUSG00000004610	Etfb	0610009I16Rik|2810441H06Rik	electron transferring flavoprotein, beta polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64289425-4	chr5	64289314	64289514	+	983.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 11 of 18)	intron (NM_001289514, intron 11 of 18)	59057.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-5740771-4	chr11	5740679	5740879	+	925.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361588, intron 1 of 6)	CpG	397.0	NM_001361590	72046.0	Mm.271657	NM_178623	ENSMUSG00000049680	Urgcp	2010005J08Rik|9130001I21Rik|AW060359|Urg4|mKIAA1507	upregulator of cell proliferation	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-75091303-2	chr8	75091203	75091403	+	778.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2315.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-38013109-4	chr3	38012966	38013166	+	931.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	114253.0	NR_040559	626410.0	Mm.389417	NR_040559	ENSMUSG00000106461	Gm20755	-	predicted gene, 20755	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-84978666-3	chr17	84978564	84978764	+	738.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159498, intron 2 of 7)	intron (NM_001159498, intron 2 of 7)	13639.0	NM_001159498	19043.0	Mm.249695	NM_011151	ENSMUSG00000061130	Ppm1b	PP2CB	protein phosphatase 1B, magnesium dependent, beta isoform	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124084597-2	chr5	124084497	124084697	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019875, intron 2 of 11)	intron (NM_019875, intron 2 of 11)	11201.0	NM_019875	56325.0	Mm.254839	NM_019875	ENSMUSG00000029408	Abcb9	TAPL|mKIAA1520	ATP-binding cassette, sub-family B (MDR/TAP), member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-87500437-4	chr6	87500337	87500537	+	998.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037727, intron 1 of 10)	intron (NM_001037727, intron 1 of 10)	-4110.0	NM_175476	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	1.73519557992391	0.958270238427631	1.66650471988792	1.14315980432088	1.41253613667864	2.36329026532912	0.942694031937088	1.74390994909498	0.93737589534265	0.450080481764559	0.916404393066723
Merged-chr14-45179809-4	chr14	45179703	45179903	+	919.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310534, intron 7 of 20)	intron (NM_001310534, intron 7 of 20)	39622.0	NM_172597	70561.0	Mm.28129	NM_172597	ENSMUSG00000021830	Txndc16	5730420B22Rik|C77647	thioredoxin domain containing 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-69309297-4	chr10	69309183	69309383	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43629.0	NM_007659	12534.0	Mm.281367	NM_007659	ENSMUSG00000019942	Cdk1	Cdc2|Cdc2a|p34<CDC2>	cyclin-dependent kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-14233189-4	chr8	14233085	14233285	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172910, intron 2 of 15)	intron (NM_172910, intron 2 of 15)	137310.0	NM_172910	244310.0	Mm.404697	NM_172910	ENSMUSG00000047495	Dlgap2	6430596N04Rik|Dap-2|Dap2|Sapap2	DLG associated protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166713965-4	chr2	166713881	166714081	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177782)	promoter-TSS (NM_177782)	-149.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-142068758-3	chr7	142068667	142068867	+	921.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7733.0	NM_028308	101513.0	Mm.53259	NM_028308	ENSMUSG00000025147	Mob2	1110017M21Rik|2700078K21Rik|AI256456|Mmh	MOB kinase activator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-155803598-4	chr4	155803516	155803716	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_025570, exon 2 of 5)	5' UTR (NM_025570, exon 2 of 5)	738.0	NM_025570	66448.0	Mm.23825	NM_025570	ENSMUSG00000029066	Mrpl20	2610008D01Rik|4930425I20Rik	mitochondrial ribosomal protein L20	protein-coding	3.4663934996811	4.06899092502262	4.2014117363022	4.35736058844536	4.68924441683656	3.65229999509187	4.77272936767191	4.95784205430365	0.715292632920006	0.106163470269526	0.508286176951278
Merged-chr1-43098601-4	chr1	43098510	43098710	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133818)	promoter-TSS (NM_133818)	18.0	NM_001013025	73122.0	Mm.246069	NM_001013025	ENSMUSG00000070939	Tgfbrap1	3110018K12Rik|AU024090|AU042859|AW742551|Trap1	transforming growth factor, beta receptor associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117202214-2	chr11	117202114	117202314	+	729.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113486, intron 1 of 11)	intron (NM_001113486, intron 1 of 11)	2553.0	NM_001113486	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-18066375-4	chr16	18066278	18066478	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289813)	promoter-TSS (NM_001289813)	-25.0	NR_110380	13353.0	Mm.27155	NM_010047	ENSMUSG00000003531	Dgcr6	-	DiGeorge syndrome critical region gene 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152573865-4	chr1	152573762	152573962	+	890.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 3 of 17)	intron (NM_016846, intron 3 of 17)	51355.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-164531342-2	chr2	164531242	164531442	+	627.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19188.0	NR_152178	670507.0	Mm.404686	NR_152178		Gm14317	-	predicted gene 14317	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-29523857-2	chr19	29523757	29523957	+	845.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081319, intron 1 of 25)	intron (NM_001081319, intron 1 of 25)	1575.0	NM_001081319	226089.0	Mm.353838	NM_177641	ENSMUSG00000038658	Ric1	C030046E11Rik|C130057E09Rik|Kiaa1432	RAB6A GEF complex partner 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-105666795-2	chr2	105666695	105666895	+	722.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_002867, intron 1 of 3)	intron (NR_002867, intron 1 of 3)	-2101.0	NM_001244198	18508.0	Mm.3608	NM_013627	ENSMUSG00000027168	Pax6	1500038E17Rik|AEY11|Dey|Gsfaey11|Pax-6|Sey	paired box 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-77839672-6	chr15	77839598	77839798	+	922.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022410, intron 1 of 40)	intron (NM_022410, intron 1 of 40)	2477.0	NM_022410	17886.0	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-88717599-2	chr10	88717499	88717699	+	574.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C|LTR|ERVK	13502.0	NM_001037166	237433.0	Mm.478763	NM_001037166		Gm4925	EG237433	predicted gene 4925	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-40073808-4	chr10	40073717	40073917	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 3 of 5)	RSINE1|SINE|B4	-48549.0	NM_144821	215929.0	Mm.55513	NM_144821	ENSMUSG00000038522	Mfsd4b1	AI317395|AI482555|Naglt1a	major facilitator superfamily domain containing 4B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-20648194-2	chr11	20648094	20648294	+	571.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_021372, exon 2 of 2)	exon (NM_021372, exon 2 of 2)	16217.0	NM_001038625	58172.0	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-101524437-3	chr13	101524356	101524556	+	874.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-126876.0	NR_046187	78136.0	Mm.399065	NR_046187		4922502H24Rik	-	RIKEN cDNA 4922502H24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91789915-4	chr16	91789802	91790002	+	992.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110276, intron 4 of 15)	ORR1D2|LTR|ERVL-MaLR	60531.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-111540180-4	chr10	111540069	111540269	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33883.0	NM_009344	21664.0	Mm.3117	NM_009344	ENSMUSG00000020205	Phlda1	DT1P1B11|TDAG51|Tdag	pleckstrin homology like domain, family A, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133744825-3	chr4	133744777	133744977	+	706.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080819, intron 1 of 19)	PB1D9|SINE|Alu	8734.0	NM_001080819	93760.0	Mm.22478	NM_001080819	ENSMUSG00000007880	Arid1a	1110030E03Rik|BAF250a|Osa1|Smarcf1	AT rich interactive domain 1A (SWI-like)	protein-coding	2.02135561109697	2.27795281682721	1.78443382338	2.86943214437444	3.04894697505017	2.75033111076527	3.22687056872946	3.44818326464666	1.60845364177942	0.0303124590120534	0.238849967092787
Merged-chr11-19965085-2	chr11	19964985	19965185	+	995.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_033523, intron 1 of 5)	intron (NM_033523, intron 1 of 5)	40643.0	NM_033523	114716.0	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-36218624-2	chr13	36218524	36218724	+	586.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_024274, intron 2 of 6)	intron (NM_024274, intron 2 of 6)	100981.0	NM_001039189	69955.0	Mm.70690	NM_024274	ENSMUSG00000021420	Fars2	Fars1|pheRS	phenylalanine-tRNA synthetase 2 (mitochondrial)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-50841391-1	chr9	50841291	50841491	+	592.0	f1_balb.idr	intron (NR_045601, intron 13 of 13)	intron (NR_045601, intron 13 of 13)	-15533.0	NM_001034085	73699.0	Mm.7726	NM_028614	ENSMUSG00000032058	Ppp2r1b	2410091N08Rik|AI790395	protein phosphatase 2, regulatory subunit A, beta	protein-coding	-1.84456824087626	-1.81369603968745	-1.82303204814395	-1.83070092346192	-1.84240106943552	-1.51787681909439	-1.82091858046888	-1.82932819844659	1.64481029852639	0.639921510788462	1
Merged-chr14-122475355-6	chr14	122475214	122475414	+	800.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045046)	promoter-TSS (NR_045046)	-70.0	NM_009574	22772.0	Mm.308936	NM_009574	ENSMUSG00000061524	Zic2	HPE5|Ku	zinc finger protein of the cerebellum 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-128724710-4	chr1	128724598	128724798	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-132399.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	6.1725891270603	5.94106082091386	5.99709014188736	5.94009136060083	6.19784714578562	5.90258406132508	5.76458273543922	5.11362135786616	-0.240367787516886	0.362845642189712	0.858437363282271
Merged-chr4-46308020-3	chr4	46307913	46308113	+	705.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-36181.0	NM_183298	110805.0	Mm.354634	NM_183298	ENSMUSG00000070990	Foxe1	Titf2	forkhead box E1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-90550716-4	chr6	90550612	90550812	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027406)	promoter-TSS (NM_027406)	-81.0	NM_001356412	107747.0	Mm.30035	NM_027406	ENSMUSG00000030088	Aldh1l1	1810048F20Rik|FDH|Fthfd|Neut2	aldehyde dehydrogenase 1 family, member L1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5560183-3	chr19	5560068	5560268	+	838.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019935, intron 1 of 3)	CpG	407.0	NM_019935	18426.0	Mm.280225	NM_019935	ENSMUSG00000024922	Ovol1	BB147136|Ovo1|movo1	ovo like zinc finger 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-63494712-3	chr15	63494609	63494809	+	997.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15101.0	NR_045279	432958.0	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	0.897837505918975	1.94210293993066	0.951559995191519	0.931937740961565	2.0944471940902	1.25530955194985	2.20636361517489	2.36999142628152	2.33958267441302	0.0658153758943576	0.384196989935373
Merged-chr18-60732162-3	chr18	60732028	60732228	+	603.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001348146, intron 1 of 6)	L2b|LINE|L2	1013.0	NM_001348102	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	1.18284255122177	0.621312320597655	1.96188498319139	0.809224349844589	1.57333490755264	0.62457543891354	0.609890805217411	0.813673600005417	-1.0156492026243	0.506923771903576	0.942956808573505
Merged-chr9-75630872-4	chr9	75630768	75630968	+	974.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027309, intron 1 of 2)	intron (NM_027309, intron 1 of 2)	5136.0	NM_027309	70082.0	Mm.19119	NM_027309	ENSMUSG00000032184	Lysmd2	2210402C18Rik|AV033872|AW538442	LysM, putative peptidoglycan-binding, domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-65042713-4	chr6	65042591	65042791	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355250)	promoter-TSS (NM_001355250)	100.0	NM_001355249	13990.0	Mm.99113	NM_007958	ENSMUSG00000029920	Smarcad1	AV081750|AW226546|D6Pas1|Etl1|etl-1|mKIAA1122	SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-93961918-2	chr2	93961818	93962018	+	662.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4818.0	NM_001145034	620695.0	Mm.482106	NM_001145034	ENSMUSG00000087006	Gm13889	Ag2	predicted gene 13889	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-60418295-4	chr2	60418197	60418397	+	925.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008867, exon 30 of 30)	3' UTR (NM_008867, exon 30 of 30)	6772.0	NR_046065	100039176.0	Mm.261790	NR_046065	ENSMUSG00000087283	Gm13580	-	predicted gene 13580	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-50243665-2	chr19	50243565	50243765	+	610.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360457, intron 9 of 26)	intron (NM_001360457, intron 9 of 26)	434981.0	NM_001252501	58178.0	Mm.313672	NM_021377	ENSMUSG00000043531	Sorcs1	Sorcs|mSorCS	sortilin-related VPS10 domain containing receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-78162707-2	chr10	78162607	78162807	+	920.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_138601, exon 7 of 7)	exon (NM_138601, exon 7 of 7)	7061.0	NM_138601	28295.0	Mm.268691	NM_138601	ENSMUSG00000053329	D10Jhu81e	C21orf33|ES1	DNA segment, Chr 10, Johns Hopkins University 81 expressed	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-117889204-2	chr5	117889073	117889273	+	663.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008712, intron 2 of 27)	B4A|SINE|B4	22334.0	NM_008712	18125.0	Mm.44249	NM_008712	ENSMUSG00000029361	Nos1	2310005C01Rik|N-NOS|NC-NOS|NO|NOS|NOS-I|Nos-1|bNOS|nNOS	nitric oxide synthase 1, neuronal	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-124948973-2	chr8	124948873	124949073	+	777.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_053207, exon 1 of 5)	exon (NM_053207, exon 1 of 5)	281.0	NM_053207	112405.0	Mm.140619	NM_053207	ENSMUSG00000031987	Egln1	AI503754|C1orf12|HIF-PH2|HPH-2|Hif-p4h-2|ORF13|Phd2|SM-20	egl-9 family hypoxia-inducible factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-94681009-4	chr1	94680902	94681102	+	689.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-116440.0	NR_040473	74689.0	Mm.399187	NR_040473	ENSMUSG00000100518	4930440C22Rik	-	RIKEN cDNA 4930440C22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-84040132-2	chr6	84040032	84040232	+	723.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077694, intron 3 of 54)	(TC)n|Simple_repeat|Simple_repeat	20746.0	NM_021469	26903.0	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102506209-1	chr12	102506109	102506309	+	886.0	f0_balb.idr	Intergenic	Intergenic	36299.0	NM_013747	27277.0	Mm.273370	NM_013747	ENSMUSG00000021192	Golga5	Ret-II	golgi autoantigen, golgin subfamily a, 5	protein-coding	1.2072628326493	0.883518744976035	0.860697616649139	0.842458117274261	1.37320562232679	2.45379495974779	1.90932650049588	2.03606326340935	3.98890842446577	0.00467928394621937	0.063653116538254
Merged-chr1-90601755-2	chr1	90601655	90601855	+	815.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-1670.0	NM_133805	108679.0	Mm.119177	NM_133805	ENSMUSG00000034432	Cops8	9430009J09Rik|AA408242|Csn8|Sgn8	COP9 signalosome subunit 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-46833552-3	chr11	46833445	46833645	+	831.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178759, intron 5 of 8)	MTC|LTR|ERVL-MaLR	22746.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	0.62288989678444	0.362061237071712	1.15510411860441	0.347809882019882	1.02994217482335	0.36386286107955	0.355811561331565	0.805649694093987	0.0102286964772694	0.995577166308261	1
Merged-chr17-35965920-2	chr17	35965820	35966020	+	813.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013854, intron 1 of 22)	intron (NM_013854, intron 1 of 22)	3830.0	NM_013854	224742.0	Mm.329022	NM_013854	ENSMUSG00000038762	Abcf1	AU041969|Abc50|D17Wsu166e|GCN20	ATP-binding cassette, sub-family F (GCN20), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-82259699-2	chr15	82259599	82259799	+	718.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_037697, exon 2 of 2)	non-coding (NR_037697, exon 2 of 2)	3676.0	NR_037698	76505.0	Mm.23023	NR_037697	ENSMUSG00000068099	1500009C09Rik	-	RIKEN cDNA 1500009C09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-85961244-4	chr6	85961154	85961354	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028099, intron 1 of 8)	CpG	413.0	NM_028099	72102.0	Mm.24007	NM_028099	ENSMUSG00000030002	Dusp11	2010300F21Rik|AI481497	dual specificity phosphatase 11 (RNA/RNP complex 1-interacting)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-6632852-2	chr15	6632752	6632952	+	770.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011815, intron 5 of 17)	intron (NM_011815, intron 5 of 17)	21451.0	NR_155272	102632231.0	Mm.444780	NR_155272		LOC102632231	-	uncharacterized LOC102632231	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24720781-4	chr17	24720695	24720895	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027900)	promoter-TSS (NR_027900)	6.0	NR_002897	104366.0	Mm.157452	NR_002897	ENSMUSG00000077709	Snora64	MBI-29|Rnu64	small nucleolar RNA, H/ACA box 64	snoRNA	1.56289476326455	1.15901952056326	1.68291510107571	1.97839413694315	1.89244138432281	2.0148917655805	1.82874341095998	1.64669611701863	0.675322710758362	0.525018729393225	0.948340152465298
Merged-chr10-10477202-2	chr10	10477102	10477302	+	748.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4888.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-123170390-4	chr6	123170296	123170496	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR17|LTR|ERVK	-2627.0	NM_001004159	381809.0	Mm.333372	NM_001004159	ENSMUSG00000067767	Clec4b2	Aplra1|F830043G12Rik|mDCAR1	C-type lectin domain family 4, member b2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-30605899-3	chr15	30605812	30606012	+	761.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355502, intron 3 of 21)	intron (NM_001355502, intron 3 of 21)	-433214.0	NR_045186	73784.0	Mm.66947	NR_045186	ENSMUSG00000115474	4930430F21Rik	-	RIKEN cDNA 4930430F21 gene	ncRNA	0.257661407107725	0.134655665540543	0.128941110707686	0.542176136709388	0.758965306445368	0.135944235581331	0.130201253985965	0.65474574453576	1.26037370380134	0.536171082170724	1
Merged-chr10-117709112-4	chr10	117709016	117709216	+	738.479126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001288586, intron 2 of 10)	intron (NM_001288586, intron 2 of 10)	1642.0	NM_010786	17246.0	Mm.22670	NM_010786	ENSMUSG00000020184	Mdm2	1700007J15Rik|AA415488|Mdm-2	transformed mouse 3T3 cell double minute 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-67129143-3	chr6	67128925	67129125	+	767.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-91618.0	NM_007836	13197.0	Mm.72235	NM_007836	ENSMUSG00000036390	Gadd45a	AA545191|Ddit1|GADD45	growth arrest and DNA-damage-inducible 45 alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127129844-4	chr7	127129743	127129943	+	935.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7814.0	NM_133686	67375.0	Mm.26928	NM_133686	ENSMUSG00000030674	Qprt	2410027J01Rik|AI647766|QPRTase	quinolinate phosphoribosyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-99562930-2	chr12	99562830	99563030	+	875.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_136760)	promoter-TSS (NR_136760)	-911.0	NR_136760	102639404.0	Mm.396324	NR_136760	ENSMUSG00000097917	Gm26839	-	predicted gene, 26839	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-120984056-3	chr7	120983954	120984154	+	797.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028955, intron 1 of 7)	intron (NM_028955, intron 1 of 7)	1545.0	NM_028955	74466.0	Mm.189707	NM_028955	ENSMUSG00000030877	Mfsd13b	4933427G17Rik	major facilitator superfamily domain containing 13B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-25785369-1	chr14	25785269	25785469	+	619.0	f0_balb.idr	Intergenic	Intergenic	-16513.0	NM_001101433	71918.0	Mm.41904	NM_001101433	ENSMUSG00000055538	Zcchc24	2310047A01Rik	zinc finger, CCHC domain containing 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-53700970-2	chr9	53700870	53701070	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175562, intron 1 of 1)	intron (NM_175562, intron 1 of 1)	5262.0	NM_175562	270160.0	Mm.290285	NM_175562	ENSMUSG00000055069	Rab39	C230094F14Rik|Rab39a	RAB39, member RAS oncogene family	protein-coding	-2.18138529563533	-2.15523716995652	-2.1631445789866	-2.16963996020037	-2.05513010215571	-2.15352360143315	-2.16135451490766	-2.16847729006863	0.759018020146679	0.829933115115583	1
Merged-chr7-66354649-1	chr7	66354549	66354749	+	597.0	f0_balb.idr	intron (NM_146191, intron 2 of 33)	(CAAAA)n|Simple_repeat|Simple_repeat	27075.0	NR_106024	102465640.0		NR_106024	ENSMUSG00000098353	Mir7057	Gm27550|mmu-mir-7057	microRNA 7057	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-66615283-3	chr9	66615185	66615385	+	693.977783	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22170.0	NM_001302116	235441.0	Mm.32465	NM_144937	ENSMUSG00000032376	Usp3	AA409661|BC017156	ubiquitin specific peptidase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6996983-6	chr19	6996816	6997016	+	869.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026675)	promoter-TSS (NM_026675)	785.0	NR_027351	107328.0	Mm.391161	NM_153597	ENSMUSG00000047656	Trpt1	AU079016|AW045591|Tpt1|Tpt1h	tRNA phosphotransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-194312464-2	chr1	194312364	194312564	+	653.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-89705.0	NR_040477	74942.0	Mm.60689	NR_040477	ENSMUSG00000103692	4930503O07Rik	-	RIKEN cDNA 4930503O07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-40839511-2	chr4	40839411	40839611	+	647.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_022305, intron 1 of 5)	intron (NM_022305, intron 1 of 5)	10627.0	NR_039584	100628614.0		NR_039584	ENSMUSG00000096377	Mir5123	mmu-mir-5123|mu-mir-5123	microRNA 5123	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-69493213-4	chr13	69493117	69493317	+	853.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40647.0	NM_198600	210106.0	Mm.315959	NM_198600	ENSMUSG00000034575	Papd7	LAK-1|POLK|Pols|TRF4|TRF4-1	PAP associated domain containing 7	protein-coding	3.81304718332548	3.5934680286899	3.02489049969076	3.05527956185074	4.25851926126416	4.53870577142785	4.307495063518	3.47660153659637	1.10283316655691	0.0299077151538451	0.236593032801648
Merged-chr10-81291738-4	chr10	81291633	81291833	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001282095)	promoter-TSS (NM_001282095)	-152.0	NM_001282095	27375.0	Mm.27984	NM_013769	ENSMUSG00000034917	Tjp3	-	tight junction protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90546010-2	chr2	90545889	90546089	+	764.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	(CA)n|Simple_repeat|Simple_repeat	34658.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	1.87363200120266	1.5651344468426	1.17942768655136	1.80858099032153	1.62818937549511	1.84307073493017	0.966415112619829	0.951489979080306	-0.729767210153416	0.561553236583673	0.960362415684079
Merged-chr8-84553751-2	chr8	84553654	84553854	+	675.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252060, intron 17 of 47)	intron (NM_001252060, intron 17 of 47)	109098.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-37452150-4	chr2	37452068	37452268	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033960)	promoter-TSS (NM_001033960)	-86.0	NM_001033960	227800.0	Mm.383192	NM_146121	ENSMUSG00000035437	Rabgap1	Gapcena|mKIAA4104	RAB GTPase activating protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-65141587-2	chr6	65141487	65141687	+	797.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_019455, intron 1 of 5)	B3A|SINE|B2	3143.0	NM_019455	54486.0	Mm.410688	NM_019455	ENSMUSG00000029919	Hpgds	H-PGDS|Ptgds2	hematopoietic prostaglandin D synthase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-36135944-4	chr17	36135844	36136044	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6519.0	NM_001177467	630294.0	Mm.484916	NM_001177467	ENSMUSG00000092243	Gm7030	EG630294|H2-t9	predicted gene 7030	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-81957218-3	chr6	81957118	81957318	+	734.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_026490)	TTS (NM_026490)	8731.0	NM_026490	56284.0	Mm.276293	NM_026490	ENSMUSG00000030045	Mrpl19	9030416F12Rik|9130412E02Rik|D6Ertd157e|MRP-L15|RLX1|Rpml15	mitochondrial ribosomal protein L19	protein-coding	1.10113068966399	2.10346860221373	1.45501268997957	1.62779936241932	1.87054059259614	2.12041498403483	2.93917353780181	3.08573385528457	2.40315165587722	0.0153730738630195	0.14763565118077
Merged-chr11-87462920-2	chr11	87462820	87463020	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199293, intron 2 of 30)	intron (NM_001199293, intron 2 of 30)	35329.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122951090-3	chr5	122951003	122951203	+	643.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003953, intron 6 of 22)	intron (NM_001003953, intron 6 of 22)	37996.0	NM_001003953	30841.0	Mm.86406	NM_013910	ENSMUSG00000029475	Kdm2b	Cxxc2|Fbl10|Fbxl10|Jhdm1b|PCCX2	lysine (K)-specific demethylase 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-17829262-2	chr17	17829162	17829362	+	627.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029536)	promoter-TSS (NR_029536)	-926.0	NR_029536	387230.0		NR_029536	ENSMUSG00000065396	Mir99b	Mirn99b|mmu-mir-99b	microRNA 99b	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101374320-3	chr7	101374207	101374407	+	755.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040111, intron 3 of 33)	intron (NM_001040111, intron 3 of 33)	-3815.0	NM_001040112	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	1.79532066913977	3.04206306864542	3.34459908523106	1.20163147195676	1.81278232082099	3.22343885683067	2.44958014823311	1.20824686877691	-0.435983065067435	0.671945019873274	0.994295938730731
Merged-chr11-119914818-2	chr11	119914669	119914869	+	601.533325	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085498, intron 1 of 7)	intron (NM_001085498, intron 1 of 7)	959.0	NM_001085498	208092.0	Mm.306673	NM_001085498	ENSMUSG00000025371	Chmp6	2400004G01Rik	charged multivesicular body protein 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-102897607-1	chr2	102897507	102897707	+	625.5	f0_balb.idr	intron (NM_001039150, intron 1 of 13)	Lx5|LINE|L1	4058.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	2.0590281041935	1.81873721448392	1.47168526564244	1.06204665524654	1.92246664646096	1.83249132030748	1.48199871153637	1.44149747806862	0.0660644823095625	0.953240111792861	0.998431161219273
Merged-chr4-45531238-4	chr4	45531138	45531338	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033306)	promoter-TSS (NM_001033306)	-410.0	NM_001033306	230126.0	Mm.251716	NM_001033306	ENSMUSG00000044813	Shb	BC028832	src homology 2 domain-containing transforming protein B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-37218777-4	chr13	37218677	37218877	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-126568.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	5.62306125289863	4.82186831817482	5.37186089080208	5.49035748483198	5.75273781006158	5.21720195793961	5.37700054775218	5.56365479880366	0.150595823706583	0.605399975110172	0.974576632476413
Merged-chr19-17256555-3	chr19	17256453	17256653	+	581.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11A|LTR|ERVK	82952.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	3.26381223567147	2.96765005783399	2.86369176381446	3.80808826425804	2.38215269884006	3.42949419230575	3.00925708522912	4.06660786814053	0.133462716892166	0.836881572549418	0.998431161219273
Merged-chr6-52211746-4	chr6	52211645	52211845	+	812.775024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015611, intron 1 of 2)	CpG	1322.0	NM_010452	15400.0	Mm.71533	NM_010452	ENSMUSG00000079560	Hoxa3	Hox-1.5|Mo-10	homeobox A3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-96944050-4	chr11	96943955	96944155	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_003293)	promoter-TSS (NR_003293)	-36.0	NM_134021	103711.0	Mm.254704	NM_134021	ENSMUSG00000018659	Pnpo	AI415282	pyridoxine 5'-phosphate oxidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-20585825-3	chr11	20585727	20585927	+	737.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021372, intron 1 of 1)	intron (NM_021372, intron 1 of 1)	42574.0	NM_021372	58172.0	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-125471029-2	chr7	125470929	125471129	+	732.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360659, intron 5 of 7)	intron (NM_001360659, intron 5 of 7)	20513.0	NM_001360659	67711.0	Mm.4467	NM_026330	ENSMUSG00000030750	Nsmce1	2510027N19Rik	NSE1 homolog, SMC5-SMC6 complex component	protein-coding	-0.913700947050176	-0.400958389194046	-0.907481563533457	-0.909820603891973	-0.913123946877299	-0.534089650650601	-0.906812700219259	-0.909412060853313	-0.644978029181113	0.834898325248146	1
Merged-chr7-19312243-2	chr7	19312143	19312343	+	771.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-2198.0	NM_001347586	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-131939656-2	chr2	131939556	131939756	+	783.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001278259, intron 2 of 4)	intron (NM_001278259, intron 2 of 4)	-11205.0	NM_001278257	26434.0	Mm.180750	NM_023043	ENSMUSG00000027338	Prnd	AI450264|Dpl|PrPLP|doppel	prion like protein doppel	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-84815469-8	chr3	84815282	84815482	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177773)	promoter-TSS (NM_001177773)	-195.0	NM_001177773	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-60778693-2	chr11	60778593	60778793	+	688.166687	f1_balb.idr|f1_c57bl6.idr	exon (NM_175491, exon 1 of 1)	exon (NM_175491, exon 1 of 1)	1168.0	NM_175491	237782.0	Mm.57726	NM_175491	ENSMUSG00000049323	Smcr8	2310076G09Rik|AI642055|D030073L15Rik	Smith-Magenis syndrome chromosome region, candidate 8 homolog (human)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-140673823-1	chr4	140673723	140673923	+	585.0	f1_c57bl6.idr	Intergenic	Intergenic	-7918.0	NM_001112722	72754.0	Mm.29329	NM_172415	ENSMUSG00000040964	Arhgef10l	2810441C07Rik	Rho guanine nucleotide exchange factor (GEF) 10-like	protein-coding	1.60355999302719	1.13302622644991	2.80800836345582	2.28374488666013	1.45911506888307	1.13928207676487	1.91447203846101	2.29653031372923	-0.839785233657084	0.452709415525191	0.91869698872066
Merged-chr4-153878165-4	chr4	153878055	153878255	+	892.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MurERV4_19-int|LTR|ERVK	72321.0	NR_040670	407793.0	Mm.260950	NR_040670		BC039966	-	cDNA sequence BC039966	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-42244680-4	chr13	42244635	42244835	+	970.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56741.0	NM_010104	13614.0	Mm.14543	NM_010104	ENSMUSG00000021367	Edn1	ET-1|PPET1|preproET	endothelin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-20297667-2	chr14	20297591	20297791	+	580.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359869, intron 3 of 9)	intron (NM_001359869, intron 3 of 9)	3001.0	NR_153364	67725.0	Mm.317636	NM_026341	ENSMUSG00000021809	Nudt13	4933433B15Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-109866622-4	chr5	109866514	109866714	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32472.0	NR_027964	667213.0	Mm.454429	NR_027964	ENSMUSG00000105044	Gm10416	EG667213	zinc finger protein pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-72555407-2	chr5	72555307	72555507	+	663.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_153351, intron 3 of 21)	intron (NR_153351, intron 3 of 21)	4238.0	NM_001359837	100978.0	Mm.187453	NM_133921	ENSMUSG00000072889	Nfxl1	1700012H24Rik|AW538212|D430033A06Rik|DNABF|GCF|Gm1058|TCF9	nuclear transcription factor, X-box binding-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-80065258-4	chr12	80065156	80065356	+	997.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47757.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-103059815-4	chr14	103059693	103059893	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR9E|LTR|ERVK	-10423.0	NM_001033242	211286.0	Mm.295289	NM_001033242	ENSMUSG00000022125	Cln5	A730075N08Rik	ceroid-lipofuscinosis, neuronal 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81401364-4	chr10	81401216	81401416	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026756, intron 8 of 8)	intron (NM_026756, intron 8 of 8)	8252.0	NM_001099917	72273.0	Mm.253147	NM_001099917	ENSMUSG00000078439	Smim24	2210404O07Rik	small integral membrane protein 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-147023808-4	chr2	147023715	147023915	+	926.94165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356402, intron 1 of 28)	intron (NM_001356402, intron 1 of 28)	10816.0	NM_001356402	24128.0	Mm.3065	NM_011917	ENSMUSG00000027433	Xrn2	-	5'-3' exoribonuclease 2	protein-coding	2.39415363572395	3.55450745127614	3.66805790733604	3.25113089432333	3.81694068503579	4.29114705433883	3.17385693665674	2.83997711605912	0.542362416663666	0.380066212507705	0.871963632021681
Merged-chr19-40728408-1	chr19	40728308	40728508	+	553.0	f0_balb.idr	intron (NM_001304721, intron 7 of 9)	intron (NM_001304721, intron 7 of 9)	68638.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	0.392069256374498	0.148622622778601	0.142886562768711	0.138463365416355	0.691603104550706	0.502927895872207	0.710773127529683	0.139235959704049	2.56099654098081	0.214421727996121	1
Merged-chr17-35186851-3	chr17	35186739	35186939	+	628.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr	intron (NM_010734, intron 2 of 3)	intron (NM_010734, intron 2 of 3)	1601.0	NM_010734	16988.0	Mm.19379	NM_010734	ENSMUSG00000073412	Lst1	B144	leukocyte specific transcript 1	protein-coding	3.80849275179215	3.04731841268756	2.5849402817197	2.20126665241313	3.58728613294598	2.37073874192315	2.28790567829295	2.97062649387554	-0.240371098177609	0.749282858768302	0.998431161219273
Merged-chr14-102924829-4	chr14	102924746	102924946	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57786.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-36111745-4	chr17	36111646	36111846	+	935.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271005)	promoter-TSS (NM_001271005)	-70.0	NM_001271005	667803.0	Mm.477808	NM_001271005		H2-T-ps	C920025E04Rik|H2-T11	histocompatibility 2, T region locus, pseudogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-126020675-2	chr4	126020575	126020775	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR18B|LTR|ERVK	-3984.0	NR_045561	12986.0	Mm.271701	NM_007782	ENSMUSG00000028859	Csf3r	Cd114|Csfgr|G-CSF-R|G-CSFR	colony stimulating factor 3 receptor (granulocyte)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-137309541-1	chr5	137309441	137309641	+	626.0	f1_c57bl6.idr	TTS (NM_011639)	TTS (NM_011639)	-1867.0	NM_001109909	83701.0	Mm.387734	NM_031405	ENSMUSG00000037364	Srrt	2810019G02Rik|ASR2A|ASR2B|ASR2C|ASR2D|Ars2|Asr2	serrate RNA effector molecule homolog (Arabidopsis)	protein-coding	1.72674039793575	0.847998726692253	0.833258824779479	1.56268368197481	1.48609997508108	1.27302474657478	1.73406503467623	0.823718964751979	0.200681981093366	0.886999898402322	0.998431161219273
Merged-chr11-117790457-4	chr11	117790348	117790548	+	812.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195090, intron 10 of 15)	intron (NM_001195090, intron 10 of 15)	-7212.0	NM_029964	77727.0	Mm.159981	NM_029964	ENSMUSG00000025573	6030468B19Rik	Il-40	RIKEN cDNA 6030468B19 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-100285288-2	chr14	100285188	100285388	+	667.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-135492.0	NM_010636	16597.0	Mm.396499	NM_010636	ENSMUSG00000072294	Klf12	2700063E05Rik|AI225908|AI315654|AP-2rep|B130052C06Rik|D530033K05Rik	Kruppel-like factor 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-45922710-3	chr13	45922610	45922810	+	860.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199304, intron 2 of 6)	intron (NM_001199304, intron 2 of 6)	42281.0	NM_001199304	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80931927-4	chr10	80931827	80932027	+	873.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008655, exon 4 of 4)	3' UTR (NM_008655, exon 4 of 4)	1836.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-134396251-4	chr4	134396151	134396351	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285875)	promoter-TSS (NM_001285875)	-69.0	NM_133880	100163.0	Mm.22116	NM_133880	ENSMUSG00000037366	Pafah2	2310074E22Rik|AI507170	platelet-activating factor acetylhydrolase 2	protein-coding	7.53378166026846	7.40664112789149	7.40603627073914	7.53710116018306	7.54059823012895	7.09710406891734	7.80079643869069	7.67982477547357	0.0859031478352016	0.598148528810897	0.972303230574462
Merged-chr9-101037533-3	chr9	101037279	101037479	+	677.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2495.0	NM_025835	66904.0	Mm.335385	NM_025835	ENSMUSG00000032527	Pccb	1300012P06Rik|AI314687|R74805	propionyl Coenzyme A carboxylase, beta polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-26207215-2	chr9	26207115	26207315	+	623.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-526593.0	NM_001310766	76898.0	Mm.218788	NM_029792	ENSMUSG00000045994	B3gat1	0710007K08Rik|AI846286|GlcAT-P|Glcatp|Hnk1	beta-1,3-glucuronyltransferase 1 (glucuronosyltransferase P)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-66833440-4	chr9	66833330	66833530	+	900.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026674, intron 1 of 5)	intron (NM_026674, intron 1 of 5)	1276.0	NM_026674	68318.0	Mm.284229	NM_026674	ENSMUSG00000053040	Aph1c	0610008A10Rik|APH-1b|Aph1b	aph1 homolog C, gamma secretase subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-80067781-4	chr11	80067683	80067883	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018776, intron 1 of 7)	intron (NM_018776, intron 1 of 7)	13208.0	NM_001277106	54394.0	Mm.272093	NM_018776	ENSMUSG00000017561	Crlf3	BB164954|Creme9|Cytor4	cytokine receptor-like factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45439013-2	chr7	45438913	45439113	+	642.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030678, intron 3 of 15)	B1_Mus1|SINE|Alu	4174.0	NM_030678	14936.0	Mm.275654	NM_030678	ENSMUSG00000003865	Gys1	Gys3|MGS	glycogen synthase 1, muscle	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-21380506-2	chr16	21380406	21380606	+	575.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-42612.0	NM_001285893	209018.0	Mm.235683	NM_145948	ENSMUSG00000033653	Vps8	AI315068|AU040738|mKIAA0804	VPS8 CORVET complex subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55608808-3	chr14	55608649	55608849	+	817.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001159417, exon 9 of 10)	exon (NM_001159417, exon 9 of 10)	4170.0	NM_001159418	16391.0	Mm.2032	NM_008394	ENSMUSG00000002325	Irf9	Irf-9|Isgf3g|p48	interferon regulatory factor 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-9935321-2	chr8	9935221	9935421	+	744.900024	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41002.0	NM_176953	319583.0	Mm.80584	NM_176953	ENSMUSG00000049717	Lig4	5830471N16Rik|tiny	ligase IV, DNA, ATP-dependent	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150110533-4	chr4	150110436	150110636	+	974.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14|LTR|ERV1	-8808.0	NM_019741	56485.0	Mm.260220	NM_019741	ENSMUSG00000028976	Slc2a5	AI526984|Glut5|Slc5a	solute carrier family 2 (facilitated glucose transporter), member 5	protein-coding	4.20817881724495	4.68054151085268	4.38663063058936	4.81999658529601	3.98524701134011	3.66888164743683	4.865111328445	4.06049825000874	-0.411034351330313	0.335008031377239	0.835408000650709
Merged-chr18-67569317-4	chr18	67569214	67569414	+	867.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16593.0	NM_194355	68166.0	Mm.208723	NM_176832	ENSMUSG00000024533	Spire1	6030430B19Rik|AI415299|AU022898|AW550622|Spir-1	spire type actin nucleation factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-32401715-4	chr16	32401582	32401782	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160402, intron 1 of 4)	intron (NM_001160402, intron 1 of 4)	1176.0	NM_001160402	277203.0	Mm.484240	NM_001160402	ENSMUSG00000079625	Tm4sf19	EG277203	transmembrane 4 L six family member 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-84649982-2	chr2	84649882	84650082	+	805.666687	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355065)	promoter-TSS (NM_001355065)	-502.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81181195-2	chr10	81181095	81181295	+	753.785706	f1_balb.idr|f1_c57bl6.idr	intron (NM_007907, intron 11 of 13)	intron (NM_007907, intron 11 of 13)	-1812.0	NM_001190474	13144.0	Mm.10294	NM_007828	ENSMUSG00000034974	Dapk3	ZIPK|dlk	death-associated protein kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126516505-2	chr8	126516405	126516605	+	873.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-41440.0	NM_001159907	212728.0	Mm.482479	NM_001159907	ENSMUSG00000090290	Tarbp1	Gm17296|Gm179	TAR RNA binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-143544464-2	chr7	143544364	143544564	+	887.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285489, intron 1 of 14)	intron (NM_001285489, intron 1 of 14)	4364.0	NM_001285490	17955.0	Mm.294625	NM_008672	ENSMUSG00000059119	Nap1l4	2810410H14Rik|AI316776|D7Wsu30e|Nap2	nucleosome assembly protein 1-like 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-50819888-3	chr14	50819804	50820004	+	993.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009632, intron 12 of 15)	intron (NM_009632, intron 12 of 15)	11988.0	NM_009632	11546.0	Mm.281482	NM_009632	ENSMUSG00000036023	Parp2	ADPRT-2|ARTD2|Adprt2|Adprtl2|Aspartl2|C78626|PARP-2|mPARP-2|pADPRT-2	poly (ADP-ribose) polymerase family, member 2	protein-coding	1.16062339225422	1.46285890752219	1.8032119743213	0.721713400930314	1.1714132102709	1.47597905307809	0.73576616898826	0.723639379132297	-1.0946937489179	0.453095782117944	0.91890520518105
Merged-chr11-29579914-2	chr11	29579847	29580047	+	613.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-31907.0	NM_001033865	78294.0	Mm.180003	NM_024277	ENSMUSG00000020460	Rps27a	0610006J14Rik|Uba52|Ubb|Ubc	ribosomal protein S27A	protein-coding	-1.20406370813143	-1.56956373024278	-1.57884638916872	-1.58647144159385	-1.598104728449	-1.56755213932999	-1.57674499865798	-1.58510656085539	-1.70745470802464	0.626337835847419	1
Merged-chr3-52102114-4	chr3	52102002	52102202	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	2904.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-126829114-3	chr4	126829010	126829210	+	886.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001035525, intron 7 of 23)	intron (NM_001035525, intron 7 of 23)	75340.0	NM_001035526	100317.0	Mm.206206	NM_133886	ENSMUSG00000028830	AU040320	A730047D20Rik|AAVR|Kiaa0319l	expressed sequence AU040320	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-20951296-1	chr10	20951196	20951396	+	546.0	f1_balb.idr	Intergenic	Intergenic	-1251.0	NM_026203	52906.0	Mm.253280	NM_026203	ENSMUSG00000019986	Ahi1	1700015F03Rik|Ahi-1|D10Bwg0629e	Abelson helper integration site 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128455879-1	chr10	128455779	128455979	+	579.666687	f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-2801.0	NR_106183	102465894.0		NR_106183	ENSMUSG00000098957	Mir8105	Gm27346|mmu-mir-8105	microRNA 8105	ncRNA	-2.05752322593321	-2.15521190974092	-2.16307242109104	-2.16952927915413	-2.17938029103484	-2.15350850414045	-2.16129297361887	-2.16837350464794	-0.683654500252594	0.846597994014493	1
Merged-chr2-60805551-3	chr2	60805467	60805667	+	745.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001141932, intron 2 of 14)	intron (NM_001141932, intron 2 of 14)	75871.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-38992141-4	chr6	38992053	38992253	+	857.6375119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 4 of 12)	L1ME3|LINE|L1	73167.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-121550412-2	chr11	121550312	121550512	+	682.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_029878, intron 15 of 38)	intron (NM_029878, intron 15 of 38)	-31070.0	NM_178763	319530.0	Mm.11395	NM_178763	ENSMUSG00000039238	Zfp750	A030007D23Rik|Znf750	zinc finger protein 750	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-68707221-4	chr11	68707093	68707293	+	891.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175260, intron 2 of 40)	Charlie1a|DNA|hAT-Charlie	15278.0	NM_175260	77579.0	Mm.218233	NM_175260	ENSMUSG00000020900	Myh10	5730504C04Rik|9330167F11Rik|Fltn|Myhn-2|Myhn2|NMHC II-B|NMHC-B|NMHCII-B|NMMHC II-b|NMMHC-B|NMMHC-IIB|SMemb|mKIAA3005	myosin, heavy polypeptide 10, non-muscle	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135277018-2	chr4	135276918	135277118	+	990.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4258.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-32060041-4	chr16	32059941	32060141	+	938.474976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177326, intron 1 of 14)	intron (NM_177326, intron 1 of 14)	19301.0	NM_177326	224105.0	Mm.234204	NM_177326	ENSMUSG00000022781	Pak2	5330420P17Rik|A130002K10Rik|AI836325|D16Ertd269e|PAK-2|mKIAA4182	p21 (RAC1) activated kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-73457195-2	chr2	73457095	73457295	+	846.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	-3306.0	NM_001289722	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-13028412-3	chr10	13028321	13028521	+	789.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19971.0	NM_175102	66125.0	Mm.29743	NM_175102	ENSMUSG00000078348	Sf3b5	10kDa|1110005L13Rik|AU043053|Sf3b10	splicing factor 3b, subunit 5	protein-coding	1.32099821741896	0.6714173104534	0.849394797406274	0.82907943229594	1.48514349129059	1.05274349957688	0.855158427778116	0.98212312119808	0.793338395055296	0.576473650471277	0.965286201225318
Merged-chr9-124020067-4	chr9	124019977	124020177	+	994.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	-1894.0	NM_009914	12771.0	Mm.57050	NM_009914	ENSMUSG00000035448	Ccr3	CC-CKR3|CKR3|Cmkbr1l2|Cmkbr3	chemokine (C-C motif) receptor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-164860312-1	chr2	164860212	164860412	+	621.5	f0_balb.idr	Intergenic	Lx5c|LINE|L1	-2604.0	NM_011125	18830.0	Mm.6105	NM_011125	ENSMUSG00000017754	Pltp	Bpife|OD107	phospholipid transfer protein	protein-coding	-1.07045467470024	-1.05039850884928	-0.615320597712597	-1.0672585780314	-0.801954590275291	-1.04797210309214	-1.05906064333965	-1.06692141825857	-0.750339699220745	0.818486702170562	1
Merged-chr3-103791359-4	chr3	103791260	103791460	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001301306)	promoter-TSS (NM_001301306)	-85.0	NM_010432	15257.0	Mm.20827	NM_010432	ENSMUSG00000008730	Hipk1	1110062K04Rik|Myak	homeodomain interacting protein kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71611011-4	chr8	71610916	71611116	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146211)	promoter-TSS (NM_146211)	-8.0	NM_146211	234407.0	Mm.240885	NM_146211	ENSMUSG00000034807	Colgalt1	2810024B22Rik|Glt25d1	collagen beta(1-O)galactosyltransferase 1	protein-coding	7.47330604454721	7.55829562506943	8.13643256849896	7.70036832608142	7.76850165944328	7.5182648250513	7.83638308261863	8.07503953920655	0.0788625992157221	0.640951391285107	0.982599433509505
Merged-chr7-30614623-2	chr7	30614532	30614732	+	616.5	f0_balb.idr|f0_c57.idr	Intergenic	B3A|SINE|B2	-1898.0	NM_026815	109637.0	Mm.25471	NM_026815	ENSMUSG00000006313	Upk1a	1110031P12Rik|AU019298|C87192|Tspan21|Upk1	uroplakin 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-35530269-2	chr6	35530169	35530369	+	633.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008098, intron 1 of 3)	MER58A|DNA|hAT-Charlie	9619.0	NM_008098	14489.0	Mm.182746	NM_008098	ENSMUSG00000029840	Mtpn	5033418D15Rik|Gcdp|V1	myotrophin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-79339552-4	chr11	79339462	79339662	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010897)	promoter-TSS (NM_010897)	-330.0	NM_010897	18015.0	Mm.255596	NM_010897	ENSMUSG00000020716	Nf1	AW494271|Dsk9|E030030H24Rik|Mhdadsk9|Nf-1	neurofibromin 1	protein-coding	-1.84371485578039	-1.81332821174849	-1.82251738371298	-1.83006564316449	-1.84158176955426	-1.81133687985023	-1.5312619047181	-1.82871450833159	1.60090129203521	0.64914985597185	1
Merged-chr17-25732255-3	chr17	25732152	25732352	+	779.938904	f0_balb.idr|f0_c57.idr|f1_balb.idr	TTS (NM_001357176)	TTS (NM_001357176)	-3788.0	NM_177822	328783.0	Mm.183275	NM_177822	ENSMUSG00000041062	Mslnl	4732467B22	mesothelin-like	protein-coding	5.52961641774878	4.18616412080466	3.80399697609444	4.30042596579649	5.14810829185532	2.81235398176352	4.56093087975831	5.67266609679854	0.310315350628588	0.704401440140376	0.998431161219273
Merged-chr17-87215597-4	chr17	87215500	87215700	+	773.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20658.0	NR_046016	399626.0	Mm.396062	NR_046016		C330024C12Rik	-	RIKEN cDNA C330024C12 gene	ncRNA	-0.164780750773717	0.210999175335759	0.0260811070373535	-0.158268508476098	-0.0145574247507245	-0.14813369146596	0.631766373611001	-0.157583773457877	1.13463718469757	0.607671578512763	1
Merged-chr5-117181819-4	chr5	117181757	117181957	+	964.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081308, intron 1 of 19)	intron (NM_001081308, intron 1 of 19)	48269.0	NM_183306	330177.0	Mm.24343	NM_183306	ENSMUSG00000061288	Taok3	2900006A08Rik|A130052D22|A430105I05Rik	TAO kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76672789-2	chr15	76672689	76672889	+	656.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_152559, intron 1 of 8)	intron (NR_152559, intron 1 of 8)	1146.0	NM_033371	73062.0	Mm.322901	NM_033371	ENSMUSG00000033819	Ppp1r16a	2900084E10Rik|Mypt3|R75527	protein phosphatase 1, regulatory (inhibitor) subunit 16A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-42915165-5	chr17	42914970	42915170	+	835.700012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1C|Other|Other	-38646.0	NM_009847	12488.0	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding	0.89441171236817	0.410677972740195	0.37633833552452	0.0375871018322926	0.181808679815102	0.0494450970880856	0.0434853377531597	0.0383893043653909	-3.25019552785809	0.116775798548136	1
Merged-chr6-29768328-4	chr6	29768214	29768414	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021414)	promoter-TSS (NM_021414)	-129.0	NM_021414	74340.0	Mm.210899	NM_021414	ENSMUSG00000029772	Ahcyl2	4631427C17Rik|AI227036|Adohcyase3|mKIAA0828	S-adenosylhomocysteine hydrolase-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127572736-3	chr10	127572616	127572816	+	977.2000119999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 31 of 88)	intron (NM_008512, intron 31 of 88)	-38157.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	1.1817919539452	1.54240492759781	1.95063641428721	2.70489383902054	1.19105124417216	1.55450364746725	1.02440905166142	2.46101417958711	-0.701091543958006	0.544032997380494	0.955588703284868
Merged-chr11-115588088-1	chr11	115587988	115588188	+	571.5	f1_balb.idr	intron (NM_001252067, intron 10 of 15)	intron (NM_001252067, intron 10 of 15)	15828.0	NM_001252067	260302.0	Mm.119479	NM_173048	ENSMUSG00000020740	Gga3	C230037M19Rik|mKIAA0154	golgi associated, gamma adaptin ear containing, ARF binding protein 3	protein-coding	-0.961808289013217	-0.941143281918953	-0.953353259954851	-0.9565109400711	-0.961015840561242	-0.938024035002784	0.030272756003758	-0.955957512668286	3.38343409954699	0.275427317743097	1
Merged-chr8-127861142-3	chr8	127861046	127861246	+	858.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	417079.0	NR_105822	102465212.0		NR_105822	ENSMUSG00000099326	Mir21c	Gm28013|mmu-mir-21c	microRNA 21c	ncRNA	1.62063307291434	1.94760602494253	1.75884851872362	1.0479475381182	1.92802027984644	1.96285910427357	1.773016663598	1.05066180050397	0.289256157252248	0.805979945815233	0.998431161219273
Merged-chr11-20937206-3	chr11	20937121	20937321	+	877.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-106113.0	NM_173752	216551.0	Mm.76694	NM_173752	ENSMUSG00000042363	Lgalsl	1110067D22Rik|A530071M23|Grpa|Hspc159|Lgalsla	lectin, galactoside binding-like	protein-coding	-0.183922252534934	-0.170479311445488	-0.174896451904854	-0.178295715269339	0.280207128212769	0.314099577973852	-0.173923315582547	0.237038385526217	3.76310114462379	0.105796582342038	1
Merged-chr8-14627728-2	chr8	14627628	14627828	+	632.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172910, intron 4 of 15)	intron (NM_172910, intron 4 of 15)	-260808.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	-1.21575676353841	-1.1882771616738	-1.1995328574972	-1.2087786211754	-1.21524488394202	-1.18583800543462	-1.19698481468061	-0.540595393272118	2.74438217975722	0.425994238664144	1
Merged-chr8-8477716-3	chr8	8477628	8477828	+	865.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MEc|LINE|L1	183045.0	NM_010111	13642.0	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-102577347-2	chr11	102577247	102577447	+	670.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_040286, intron 2 of 2)	intron (NR_040286, intron 2 of 2)	1772.0	NR_040286	100040792.0	Mm.277966	NR_040286	ENSMUSG00000078640	Gm11627	-	predicted gene 11627	ncRNA	-0.223573584343586	-0.208860821007199	-0.034070884486266	0.321432362889224	-0.22265439519493	-0.207775241231825	0.475613195052598	-0.216746945330095	0.1435305523127	0.952259734762166	1
Merged-chr10-119610598-4	chr10	119610472	119610672	+	863.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133442, intron 1 of 21)	intron (NM_133442, intron 1 of 21)	151127.0	NR_045359	75321.0	Mm.402041	NR_045359	ENSMUSG00000084764	Grip1os2	4930564G21Rik	glutamate receptor interacting protein 1, opposite strand 2	ncRNA	0.77249995689943	1.83257082317144	1.85764500929605	0.796176068407894	1.40304325532758	0.831382881555533	1.04780384228464	1.89414708676604	-0.22354241151651	0.874853473147574	0.998431161219273
Merged-chr19-40680222-2	chr19	40680122	40680322	+	754.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009848, intron 1 of 9)	Lx5|LINE|L1	20452.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-137884020-2	chr5	137883920	137884120	+	698.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12262.0	NM_001024932	545812.0	Mm.332769	NM_001024932	ENSMUSG00000066682	Pilrb2	EG545812	paired immunoglobin-like type 2 receptor beta 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119391517-2	chr11	119391417	119391617	+	902.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_035453)	TTS (NR_035453)	1045.0	NR_035453	100316690.0		NR_035453	ENSMUSG00000088015	Mir1932	mir-1932|mmu-mir-1932	microRNA 1932	ncRNA	1.29019536557156	1.96226474793593	0.490040868116959	0.47870537891195	0.828493811285293	0.507568798768032	0.493237559280315	1.04150231418349	-1.92462856122981	0.241379412420092	0.737728541910355
Merged-chr15-78589735-3	chr15	78589659	78589859	+	699.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7288.0	NM_028195	72318.0	Mm.32911	NM_028195	ENSMUSG00000018008	Cyth4	2510004M07Rik|5830469K17Rik|AI467541|Pscd4|mFLJ00017	cytohesin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-56094971-4	chr9	56094867	56095067	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011193, intron 1 of 14)	intron (NM_011193, intron 1 of 14)	4991.0	NM_011193	19200.0	Mm.2534	NM_011193	ENSMUSG00000032322	Pstpip1	CD2BP1|def-2	proline-serine-threonine phosphatase-interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-38550797-4	chr6	38550690	38550890	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138680)	promoter-TSS (NM_138680)	-544.0	NM_138680	192196.0	Mm.276133	NM_138680	ENSMUSG00000029823	Luc7l2	4930471C18Rik|AA522013|AU015269|CGI59|Cgi74	LUC7-like 2 (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-51860556-2	chr11	51860456	51860656	+	655.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2926.0	NM_001357588	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-27202079-4	chr3	27201950	27202150	+	979.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 1 of 4)	intron (NM_178772, intron 1 of 4)	19046.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-93450922-4	chr2	93450835	93451035	+	874.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001136055, intron 1 of 9)	intron (NM_001136055, intron 1 of 9)	1737.0	NM_001271462	12521.0	Mm.4261	NM_007656	ENSMUSG00000027215	Cd82	AA682076|AL023070|C33|IA4|Kai1|Tspan27	CD82 antigen	protein-coding	1.85228131718119	2.44890496810263	1.23807412616738	1.21457952246383	2.28112632217605	2.46768705339876	2.27620488407648	2.30668427605946	1.335296888183	0.190200504469667	0.668954168251044
Merged-chr2-4864620-4	chr2	4864491	4864691	+	702.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-16973.0	NM_175400	109079.0	Mm.34329	NM_175400	ENSMUSG00000026662	Sephs1	1110046B24Rik|AA589574|AI505014|AW111620|SELD|SPS|SPS1	selenophosphate synthetase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-84601403-6	chr2	84601382	84601582	+	915.388916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007615, exon 20 of 20)	3' UTR (NM_007615, exon 20 of 20)	47998.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-73608989-2	chr7	73608880	73609080	+	767.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50585.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	0.24702227113632	0.270692794120079	1.07090936177231	0.257018992565564	0.54277065858023	0.933347252248392	0.62059658829441	0.258065399253907	0.459515085730472	0.809365552215096	1
Merged-chr2-129195299-2	chr2	129195199	129195399	+	783.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-3474.0	NM_015747	20515.0	Mm.272675	NM_015747	ENSMUSG00000027397	Slc20a1	AI607883|Glvr-1|Glvr1	solute carrier family 20, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-86159693-1	chr15	86159593	86159793	+	1000.0	f1_balb.idr	intron (NM_145475, intron 3 of 12)	intron (NM_145475, intron 3 of 12)	-26035.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	0.103955882813452	-0.0156574816451464	-0.0203364230427454	0.376871786726508	0.509303409826448	-0.0146002455321363	-0.0193060187765454	0.382495457032001	0.937478177023466	0.663018386695444	1
Merged-chr19-60757029-2	chr19	60756929	60757129	+	751.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_178421, exon 1 of 1)	exon (NM_178421, exon 1 of 1)	1042.0	NM_178421	332397.0	Mm.186390	NM_178421	ENSMUSG00000072437	Nanos1	NOS-1	nanos C2HC-type zinc finger 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-149306926-5	chr4	149306900	149307100	+	885.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008441, intron 1 of 20)	intron (NM_008441, intron 1 of 20)	698.0	NM_207682	16561.0	Mm.402393	NM_008441	ENSMUSG00000063077	Kif1b	A530096N05Rik|AI448212|AI506502|D4Mil1e|KIF1Bp130|KIF1Bp204	kinesin family member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-30617464-3	chr14	30617354	30617554	+	814.027771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011103, intron 1 of 17)	intron (NM_011103, intron 1 of 17)	-7144.0	NM_001310682	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-69274121-2	chr10	69274021	69274221	+	557.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252638, intron 8 of 11)	intron (NM_001252638, intron 8 of 11)	60927.0	NM_001252638	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-118545967-4	chr2	118545873	118546073	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001331221, intron 2 of 3)	intron (NM_001331221, intron 2 of 3)	-1386.0	NR_138603	171543.0	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-33246098-1	chr14	33245998	33246198	+	668.0	f0_balb.idr	intron (NM_153800, intron 2 of 10)	RLTR16|LTR|ERVK	29275.0	NM_153800	239027.0	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98816945-4	chr11	98816840	98817040	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138660, intron 3 of 13)	intron (NM_138660, intron 3 of 13)	-6851.0	NR_033551	100037262.0	Mm.442062	NR_033551	ENSMUSG00000075576	Gm12359	-	predicted gene 12359	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53437511-4	chr4	53437402	53437602	+	965.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2911.0	NM_001159633	100434.0	Mm.482207	NM_133891	ENSMUSG00000028412	Slc44a1	2210409B22Rik|4833416H08Rik|AW547365|CHTL1|CTL1|Cdw92	solute carrier family 44, member 1	protein-coding	3.71973588421303	3.21357247608489	3.81798408074957	2.98740727079754	4.56244797925875	4.34039497692403	5.06897490973408	5.35907619792824	1.85281984062076	4.06721730655057e-05	0.00147576027955626
Merged-chr5-92676700-2	chr5	92676600	92676800	+	586.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	-1429.0	NM_001360019	320696.0	Mm.209991	NM_177230	ENSMUSG00000050050	Ccdc158	4932413O14Rik	coiled-coil domain containing 158	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-40787500-4	chr9	40787387	40787587	+	729.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(GGAGAA)n|Simple_repeat|Simple_repeat	-13786.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	-1.84379369717701	-1.81336219421491	-1.82256493189016	-1.83012433462039	-1.84165746193693	-1.66656684606785	-1.82048163379875	-1.68397012864323	1.53670164110226	0.662623097221823	1
Merged-chr4-49521163-4	chr4	49521090	49521290	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289901)	promoter-TSS (NM_001289901)	14.0	NM_001289901	230162.0	Mm.186994	NM_145547	ENSMUSG00000039634	Zfp189	BB131811|C430015I23Rik	zinc finger protein 189	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-121985459-2	chr3	121985359	121985559	+	544.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356524, intron 3 of 22)	MIRb|SINE|MIR	17653.0	NM_001356524	214137.0	Mm.229287	NM_172525	ENSMUSG00000039831	Arhgap29	6720461J18Rik|A830014I19|AU040217|B130017I01Rik|C76601|Parg1	Rho GTPase activating protein 29	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-44453976-3	chr10	44453867	44454067	+	676.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007548, intron 2 of 6)	intron (NM_007548, intron 2 of 6)	4781.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-75400885-3	chr1	75400803	75401003	+	842.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001173477, intron 1 of 4)	intron (NM_001173477, intron 1 of 4)	818.0	NM_001173477	11790.0	Mm.275397	NM_007463	ENSMUSG00000026207	Speg	AW125581|Apeg1|BPEG|D1Bwg1450e|SPEGalpha|SPEGbeta|mKIAA1297	SPEG complex locus	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-34858813-4	chr1	34858677	34858877	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357425, intron 2 of 8)	intron (NM_001357425, intron 2 of 8)	8788.0	NM_001357425	226971.0	Mm.292751	NM_145516	ENSMUSG00000026123	Plekhb2	2310009M15Rik|AU018239|Evt2|Phdc|evt-2	pleckstrin homology domain containing, family B (evectins) member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-111132239-3	chr10	111132136	111132336	+	853.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-32566.0	NM_001003717	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-153492059-4	chr1	153491967	153492167	+	996.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4407.0	NM_007842	13211.0	Mm.20000	NM_007842	ENSMUSG00000042699	Dhx9	AI326842|Ddx9|HEL-5|NDHII|RHA|mHEL-5	DEAH (Asp-Glu-Ala-His) box polypeptide 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-9700524-4	chr1	9700429	9700629	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290397)	promoter-TSS (NM_001290397)	-320.0	NM_008651	17864.0	Mm.479	NM_008651	ENSMUSG00000025912	Mybl1	A-myb|G1-419-6|repro9	myeloblastosis oncogene-like 1	protein-coding	0.362753391635751	0.549126323656088	4.08091897298202	0.448113048925698	0.376250535547055	0.560843031508754	4.39090966054857	0.456425637955712	0.371823562481934	1	1
Merged-chr7-4813551-4	chr7	4813484	4813684	+	905.68335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur3|SINE|Alu	-1244.0	NM_133777	77891.0	Mm.389787	NM_133777	ENSMUSG00000060860	Ube2s	0910001J09Rik|6720465F12Rik|AA409170|E2-EPF	ubiquitin-conjugating enzyme E2S	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-80957319-1	chr3	80957219	80957419	+	590.0	f1_c57bl6.idr	Intergenic	L1M5|LINE|L1	-43659.0	NM_001345955	14658.0	Mm.275639	NM_010298	ENSMUSG00000028020	Glrb	AI853901|Glyrb|spa|spastic	glycine receptor, beta subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-60775747-2	chr18	60775647	60775847	+	925.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_020600, intron 1 of 4)	intron (NM_020600, intron 1 of 4)	1151.0	NM_020600	20044.0	Mm.43778	NM_020600	ENSMUSG00000024608	Rps14	2600014J02Rik|AL023078	ribosomal protein S14	protein-coding	-0.334507112000656	-0.130394636109402	-0.150880696459642	-0.329134083292554	-0.333708520878286	-0.320735064613178	-0.146351594950431	0.387902764858871	1.71269734590865	0.468819100224888	1
Merged-chr14-103487162-4	chr14	103487062	103487262	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26179.0	NM_022886	64929.0	Mm.244003	NM_022886	ENSMUSG00000022123	Scel	9230114I02Rik	sciellin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-122629195-4	chr2	122629108	122629308	+	990.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1417.0	NM_001033256	214616.0	Mm.271306	NM_001033256		Spata5l1	AV141009|C130039A10Rik	spermatogenesis associated 5-like 1	protein-coding	-0.667543147450544	-0.65831952661807	-0.66135736860609	-0.260289805444673	-0.529204966490427	-0.657632628119559	-0.66068867894781	-0.254793673190986	0.389194164369103	0.887428419764641	1
Merged-chr7-89215925-4	chr7	89215837	89216037	+	980.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360746, intron 5 of 14)	MTC|LTR|ERVL-MaLR	122850.0	NM_028343	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80898417-2	chr10	80898317	80898517	+	551.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081688, intron 17 of 17)	B4A|SINE|B4	2552.0	NM_013895	30055.0	Mm.142132	NM_013895	ENSMUSG00000020219	Timm13	D10Ertd378e|Tim9|Timm9	translocase of inner mitochondrial membrane 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-12859342-1	chr19	12859242	12859442	+	1000.0	f0_balb.idr	Intergenic	Intergenic	-2435.0	NM_146702	258697.0	Mm.223132	NM_146702	ENSMUSG00000046272	Olfr1444	MOR202-4	olfactory receptor 1444	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-102094332-4	chr13	102094270	102094470	+	867.9833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-326153.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-17906130-3	chr17	17906032	17906232	+	664.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18308.0	NM_008039	14289.0	Mm.378918	NM_008039	ENSMUSG00000052270	Fpr2	E330010I07Rik|Fpr-rs2	formyl peptide receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-8955941-2	chr11	8955824	8956024	+	660.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55267.0	NM_001303610	15574.0	Mm.42201	NM_008316	ENSMUSG00000020413	Hus1	-	HUS1 checkpoint clamp component	protein-coding	1.00684354977009	1.71061215105117	0.684008017815398	1.22230523554299	1.01635754832989	0.703806984086541	0.687620351636199	2.06635928871136	0.224642376566161	0.878081444766766	0.998431161219273
Merged-chr4-63585545-2	chr4	63585445	63585645	+	662.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001356354, exon 10 of 10)	3' UTR (NM_001356354, exon 10 of 10)	15219.0	NM_001354647	670833.0	Mm.32213	NM_001354647	ENSMUSG00000084782	Gm11213	-	predicted gene 11213	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-34420618-4	chr19	34420521	34420721	+	948.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54514.0	NM_009890	12642.0	Mm.30824	NM_009890	ENSMUSG00000050370	Ch25h	AI462618|m25OH	cholesterol 25-hydroxylase	protein-coding	0.985231320113226	0.0500430152544029	0.0435966099753675	0.362254164150865	0.542949415924606	0.0514916769459897	0.0450212340561852	0.0394745088010893	-1.54370505199684	0.478999125261128	1
Merged-chr12-98258089-2	chr12	98257989	98258189	+	598.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008079, intron 1 of 16)	intron (NM_008079, intron 1 of 16)	1370.0	NM_008079	14420.0	Mm.5120	NM_008079	ENSMUSG00000021003	Galc	2310068B06Rik|A930008M05Rik|AW212969|AW413532|Gacy|twi|twitcher	galactosylceramidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-24685197-3	chr16	24685100	24685300	+	870.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 7 of 12)	(A)n|Simple_repeat|Simple_repeat	-36655.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-32801948-4	chr13	32801843	32802043	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030215)	promoter-TSS (NM_030215)	-87.0	NM_030215	78903.0	Mm.286680	NM_030215	ENSMUSG00000021400	Wrnip1	4833444L21Rik|WHIP|Wrnip	Werner helicase interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-89026821-3	chr11	89026703	89026903	+	714.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	27400.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	1.78822273380177	2.24486451327992	1.31923856199113	1.76883080036791	1.6894908875617	1.36737971486598	1.08622155608712	2.5008518774483	-0.0634515673094514	0.954868111172506	0.998431161219273
Merged-chr17-30218161-2	chr17	30218061	30218261	+	991.333374	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_027060, exon 11 of 11)	3' UTR (NM_027060, exon 11 of 11)	178019.0	NR_030688	623169.0	Mm.440508	NR_030688		Gm6402	EG623169	ribosomal protein S17 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65586695-2	chr9	65586595	65586795	+	685.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357526)	promoter-TSS (NM_001357526)	-465.0	NR_151702	208084.0	Mm.211032	NM_172453	ENSMUSG00000041064	Pif1	4631410M14|AI449441	PIF1 5'-to-3' DNA helicase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-26445951-4	chr2	26445835	26446035	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153125)	promoter-TSS (NM_153125)	11.0	NR_152207	100125929.0	Mm.392411	NR_152207		0610009E02Rik	-	RIKEN cDNA 0610009E02 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-54837862-4	chr1	54837736	54837936	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081433, intron 1 of 27)	intron (NM_001081433, intron 1 of 27)	88551.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	3.7068582678264	4.06838092185445	3.33110526393179	3.32914224111459	3.55683995098437	4.09611526167564	3.45269273147165	3.25289977381336	-0.0295837642116392	0.955159088896735	0.998431161219273
Merged-chr18-34222269-4	chr18	34222201	34222401	+	810.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040534)	promoter-TSS (NR_040534)	-529.0	NR_040534	633395.0	Mm.414290	NR_040534	ENSMUSG00000073607	Gm10548	-	ribosomal protein L29 pseudogene	pseudo	-0.268192484538908	-0.0430941819349654	-0.403526868612096	0.311648822064501	-0.411233642819854	-0.398449839475335	-0.402613344736265	-0.406163536919161	-3.57598371895686	0.145990454881062	1
Merged-chr1-135686910-4	chr1	135686802	135687002	+	963.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33161.0	NM_001360782	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-134344156-2	chr5	134344056	134344256	+	767.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	17702.0	NR_039544	100628570.0		NR_039544	ENSMUSG00000093311	Mir3965	mmu-mir-3965|mu-mir-3965	microRNA 3965	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-54760319-4	chr6	54760195	54760395	+	834.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56621.0	NM_199143	387524.0	Mm.286149	NM_199143	ENSMUSG00000058446	Znrf2	1190002C14Rik|AU044205|D6Ertd365e	zinc and ring finger 2	protein-coding	1.7080863626788	1.2954182066467	1.03375339956976	2.09132832343305	1.72291787427764	1.94588780152696	1.03817162225572	2.01561710897146	0.392507328775594	0.744629607272922	0.998431161219273
Merged-chr7-116625598-4	chr7	116625471	116625671	+	974.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	121202.0	NM_001360375	53322.0	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-52488934-2	chr6	52488834	52489034	+	647.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3517.0	NR_046049	74304.0	Mm.490579	NR_046049	ENSMUSG00000107895	1700094M24Rik	-	RIKEN cDNA 1700094M24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-127948492-2	chr3	127948381	127948581	+	742.833313	f1_balb.idr|f1_c57bl6.idr	intron (NR_040552, intron 4 of 4)	intron (NR_040552, intron 4 of 4)	32310.0	NR_040552	329753.0	Mm.119720	NR_040552	ENSMUSG00000104763	9830132P13Rik	9830132P13	RIKEN cDNA 9830132P13 gene	ncRNA	-0.614170465458818	-0.601824563084938	-0.605858859943893	0.224987953334476	-0.325063882527661	-0.600916564600106	-0.604968198603868	-0.608432951573194	-1.83460669399418	0.515797078734355	1
Merged-chr5-146948648-4	chr5	146948528	146948728	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025652)	promoter-TSS (NM_025652)	-29.0	NM_025652	66596.0	Mm.196528	NM_025652	ENSMUSG00000016503	Gtf3a	2010015D03Rik|2610111I01Rik|5330403M05Rik	general transcription factor III A	protein-coding	6.77377822400589	6.87922363982947	6.81846868008256	6.93430574566488	5.70372106975616	5.62377435349621	5.49041937096005	6.31268346494378	-1.10872184947598	6.14235145127848e-07	4.31715154703057e-05
Merged-chr18-60683423-2	chr18	60683333	60683533	+	549.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20023.0	NR_045401	328963.0	Mm.417203	NR_045401		G630071F17Rik	G630071F17	RIKEN cDNA G630071F17 gene	ncRNA	0.988387417604229	0.675364798767737	1.72885049244976	1.98263352190634	0.626234113814053	0.679059712321892	0.662404385289784	1.57968203492541	-1.72409885792489	0.266268678716729	0.769151254995423
Merged-chr17-71284737-2	chr17	71284637	71284837	+	877.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357337, intron 2 of 7)	intron (NM_001357337, intron 2 of 7)	26274.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-90213567-2	chr16	90213467	90213667	+	638.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7175.0	NM_011434	20655.0	Mm.276325	NM_011434	ENSMUSG00000022982	Sod1	B430204E11Rik|Cu/Zn-SOD|CuZnSOD|Ipo-1|Ipo1|SODC|Sod-1	superoxide dismutase 1, soluble	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-80066988-4	chr9	80066903	80067103	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146003)	promoter-TSS (NM_146003)	100.0	NM_146003	215351.0	Mm.28232	NM_146003	ENSMUSG00000034252	Senp6	2810017C20Rik|E130319N12Rik|Susp1|mKIAA0797	SUMO/sentrin specific peptidase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-41502786-2	chr7	41502686	41502886	+	870.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-2896.0	NM_001033530	101835.0	Mm.370336	NM_001033530	ENSMUSG00000074166	AW146154	AI451288	expressed sequence AW146154	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-114276677-4	chr7	114276597	114276797	+	928.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011965)	promoter-TSS (NM_011965)	-581.0	NM_011965	26440.0	Mm.121265	NM_011965	ENSMUSG00000030751	Psma1	C2|HC2|Pros-30|alpha-type	proteasome (prosome, macropain) subunit, alpha type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-41539767-1	chr13	41539667	41539867	+	561.0	f0_balb.idr	Intergenic	Intergenic	-52407.0	NM_001111324	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27000298-3	chr17	27000190	27000390	+	850.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17745.0	NM_001251881	70772.0	Mm.440437	NM_027544	ENSMUSG00000048731	Ggnbp1	0610031G08Rik|mdf	gametogenetin binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-37645594-2	chr18	37645494	37645694	+	925.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301259, intron 1 of 3)	MT2B|LTR|ERVL	-1390.0	NM_175770	24074.0	Mm.236009	NM_175770	ENSMUSG00000051316	Taf7	55kDa|AI607308|BB007175|TAFII55|Taf2f	TATA-box binding protein associated factor 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-25543525-4	chr8	25543445	25543645	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001079909, intron 2 of 16)	intron (NM_001079909, intron 2 of 16)	12538.0	NR_110510	102633315.0	Mm.437828	NR_110510	ENSMUSG00000086134	Gm16159	-	predicted gene 16159	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95855860-4	chr3	95855780	95855980	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027541)	promoter-TSS (NM_027541)	5.0	NM_001316751	70767.0	Mm.279872	NM_027541	ENSMUSG00000015748	Prpf3	3632413F13Rik	pre-mRNA processing factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6955702-2	chr19	6955602	6955802	+	744.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290349, intron 25 of 30)	intron (NM_001290349, intron 25 of 30)	13140.0	NM_001285453	12015.0	Mm.4387	NM_007522	ENSMUSG00000024959	Bad	AI325008|Bbc2	BCL2-associated agonist of cell death	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128125914-4	chr2	128125804	128126004	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207680)	promoter-TSS (NM_207680)	-134.0	NM_207681	12125.0	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	4.26548416613913	3.98298739858174	4.00416451179317	5.48101664229245	4.86962661762608	4.68507386371431	5.31033186539477	4.64364246702702	0.370452719582239	0.386224692807441	0.876334568009738
Merged-chr12-85482526-2	chr12	85482426	85482626	+	684.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8636.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25119262-2	chr7	25119162	25119362	+	550.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163555, intron 4 of 13)	B1F|SINE|Alu	13198.0	NM_011138	18987.0	Mm.76683	NM_011138	ENSMUSG00000008496	Pou2f2	Oct-2|Oct2a|Oct2b|Oct2c|Oct2d|Otf-2|Otf2	POU domain, class 2, transcription factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-33917138-2	chr17	33917038	33917238	+	854.4375	f1_balb.idr|f1_c57bl6.idr	exon (NM_020625, exon 2 of 2)	exon (NM_020625, exon 2 of 2)	962.0	NM_020625	81630.0	Mm.482096	NM_020625	ENSMUSG00000051390	Zbtb22	1110008J20Rik|AI265210|AI415166|Bing1|Zfp297	zinc finger and BTB domain containing 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-67071615-2	chr12	67071515	67071715	+	589.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001193266, intron 1 of 16)	intron (NM_001193266, intron 1 of 16)	150934.0	NM_001193266	320772.0	Mm.227680	NM_207010	ENSMUSG00000034912	Mdga2	6720489L24Rik|9330209L04Rik|Adp|Mamdc1	MAM domain containing glycosylphosphatidylinositol anchor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-6625181-1	chr11	6625081	6625281	+	587.0	f1_balb.idr	5' UTR (NM_001130457, exon 2 of 13)	5' UTR (NM_001130457, exon 2 of 13)	886.0	NM_001130457	21379.0	Mm.247761	NM_134011	ENSMUSG00000000384	Tbrg4	2310042P22Rik|AA120735|AA408001|AI527316|Cpr2|R74877|Tb-12|mKIAA0948	transforming growth factor beta regulated gene 4	protein-coding	0.157702218747292	-0.0819932243947885	-0.0866073459161932	0.199863337937764	-0.0951596664511005	0.516845491437808	-0.0855909156956339	0.204254779752181	0.915422829853958	0.674434293582983	1
Merged-chr18-42762128-3	chr18	42761937	42762137	+	949.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028392, intron 1 of 8)	intron (NM_028392, intron 1 of 8)	137469.0	NR_073583	72930.0	Mm.26134	NM_027531	ENSMUSG00000024500	Ppp2r2b	2900026H06Rik|6330404L05Rik|E130009M08Rik|PP2A-PR55B|PR55-BETA|SCA12	protein phosphatase 2, regulatory subunit B, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-20240519-6	chr11	20240336	20240536	+	820.611084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172260, exon 3 of 7)	exon (NM_172260, exon 3 of 7)	8988.0	NM_172260	216543.0	Mm.260314	NM_172260	ENSMUSG00000044066	Cep68	6030463E10Rik|AI481761|BC027174|Kiaa0582	centrosomal protein 68	protein-coding	0.53772203005603	0.394024256989928	1.53448865869116	1.11996236185018	0.362318680458191	0.985716084794356	0.385549806135578	0.376093816103261	-2.12165736688309	0.235356301137352	0.731653460484462
Merged-chr18-34781305-3	chr18	34781203	34781403	+	849.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081256, intron 1 of 23)	intron (NM_001081256, intron 1 of 23)	4295.0	NM_001081256	277250.0	Mm.277906	NM_029518	ENSMUSG00000038773	Kdm3b	5830462I21Rik|JHDM2B|Jmjd1b|mKIAA1082	KDM3B lysine (K)-specific demethylase 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30929907-4	chr2	30929835	30930035	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23066.0	NM_133673	30934.0	Mm.249164	NM_133673	ENSMUSG00000026848	Tor1b	2610016F05Rik|DQ1|torsinB	torsin family 1, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5814589-3	chr19	5814413	5814613	+	831.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11841.0	NR_002847	72289.0	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-85218288-3	chr17	85218186	85218386	+	861.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028576, intron 3 of 10)	MLT1H1|LTR|ERVL-MaLR	127586.0	NM_028576	73582.0	Mm.260753	NM_028576	ENSMUSG00000071037	Camkmt	1700106N22Rik|AI480743|AV099781|CLNMT|CaM KMT	calmodulin-lysine N-methyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102305086-2	chr12	102304986	102305186	+	686.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161365, intron 1 of 9)	intron (NM_001161365, intron 1 of 9)	21445.0	NM_001161365	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-65782860-4	chr17	65782738	65782938	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_104465)	promoter-TSS (NR_104465)	-517.0	NR_152099	70351.0	Mm.48686	NM_146081	ENSMUSG00000061950	Ppp4r1	3110001J10Rik|Pp4r1	protein phosphatase 4, regulatory subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-98925664-4	chr13	98925559	98925759	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178716, intron 1 of 23)	intron (NM_178716, intron 1 of 23)	725.0	NM_178716	238799.0	Mm.173286	NM_178716	ENSMUSG00000009470	Tnpo1	AU021749|D13Ertd688e|IPO2|Kpnb2|MIP|MIP1|TRN	transportin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-140959871-2	chr4	140959771	140959971	+	784.799988	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1400.0	NM_001355515	67680.0	Mm.246965	NM_023374	ENSMUSG00000009863	Sdhb	0710008N11Rik	succinate dehydrogenase complex, subunit B, iron sulfur (Ip)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-63583911-2	chr4	63583811	63584011	+	611.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001356354, exon 10 of 10)	exon (NM_001356354, exon 10 of 10)	16853.0	NM_001354647	670833.0	Mm.32213	NM_001354647	ENSMUSG00000084782	Gm11213	-	predicted gene 11213	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-69127390-4	chr12	69127284	69127484	+	921.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31802.0	NM_009093	20090.0	Mm.379006	NM_009093	ENSMUSG00000034892	Rps29	-	ribosomal protein S29	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81643738-4	chr10	81643610	81643810	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027480, exon 17 of 20)	exon (NM_027480, exon 17 of 20)	-5359.0	NM_001142963	100233208.0	Mm.327168	NM_001142963	ENSMUSG00000096856	Gm10778	-	predicted gene 10778	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-68134735-4	chr10	68134646	68134846	+	953.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023598, intron 5 of 9)	intron (NM_023598, intron 5 of 9)	143980.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	3.5556319419614	3.07143953098309	1.66331040047699	3.26428161367712	3.19923786754899	2.96861123148673	3.6162279336671	4.05256896714938	0.734407951513982	0.282042706052659	0.784607383364121
Merged-chr3-105898635-4	chr3	105898664	105898864	+	986.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027025, intron 1 of 6)	(TCCC)n|Simple_repeat|Simple_repeat	-5657.0	NM_009631	11542.0	Mm.235024	NM_009631	ENSMUSG00000000562	Adora3	A3AR|A3R|AA3R|ARA3|Gpcr2	adenosine A3 receptor	protein-coding	0.668952926363362	0.0450777026757158	0.0394612469545979	0.0351253160959268	0.412488838189216	0.046343266871512	0.040700310261187	0.672651011896557	0.590531973513009	0.790386368061938	1
Merged-chr4-120035248-2	chr4	120035148	120035348	+	908.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_010657, intron 2 of 8)	intron (NM_010657, intron 2 of 8)	-125958.0	NM_007902	13615.0	Mm.284855	NM_007902	ENSMUSG00000028635	Edn2	ET-2|PPET2|VIC	endothelin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180261625-2	chr1	180261525	180261725	+	622.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5325.0	NM_001128605	19165.0	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83453293-2	chr6	83453193	83453393	+	643.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347313, intron 2 of 11)	intron (NM_001347313, intron 2 of 11)	3099.0	NM_001347313	194388.0	Mm.211030	NM_183138	ENSMUSG00000034832	Tet3	B430006D22Rik|BC037432|D230004J03Rik	tet methylcytosine dioxygenase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75966674-2	chr11	75966574	75966774	+	870.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-33238.0	NM_198637	74230.0	Mm.271247	NM_198637	ENSMUSG00000053783	1700016K19Rik	Liat1	RIKEN cDNA 1700016K19 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91356242-2	chr16	91356169	91356369	+	721.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-16514.0	NM_010509	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-45306926-4	chr9	45306821	45307021	+	757.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12179.0	NM_001013373	214531.0	Mm.394987	NM_001013373	ENSMUSG00000037129	Tmprss13	BC010843|Tpmrss13	transmembrane protease, serine 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80036029-2	chr10	80035929	80036129	+	622.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_025554)	TTS (NM_025554)	3630.0	NM_025554	66420.0	Mm.18579	NM_025554	ENSMUSG00000004667	Polr2e	2410021N14Rik|25kDa|AW208866|RPB5|XAP4	polymerase (RNA) II (DNA directed) polypeptide E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-35799617-4	chr15	35799514	35799714	+	924.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177151, intron 39 of 61)	MTB|LTR|ERVL-MaLR	-138567.0	NR_030606	100124469.0		NR_030606	ENSMUSG00000077890	Mir875	Mirn875|mir-875|mmu-mir-875	microRNA 875	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-36706651-3	chr16	36706542	36706742	+	889.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285788, intron 1 of 7)	intron (NM_001285788, intron 1 of 7)	12664.0	NM_001285791	106347.0	Mm.17807	NM_134109	ENSMUSG00000022900	Ildr1	AU041483|AU044638	immunoglobulin-like domain containing receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10603996-2	chr19	10603896	10604096	+	640.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145496, intron 1 of 16)	intron (NM_145496, intron 1 of 16)	262.0	NM_145496	225913.0	Mm.374868	NM_145496	ENSMUSG00000034371	Tkfc	BC021917|Dak	triokinase, FMN cyclase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-109038616-4	chr9	109038495	109038695	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001284332)	promoter-TSS (NM_001284332)	28.0	NM_025858	66940.0	Mm.196533	NM_025858	ENSMUSG00000025647	Shisa5	2310008D10Rik|6430628I05Rik|Scotin|mShisa5	shisa family member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99465597-1	chr7	99465497	99465697	+	605.0	f1_c57bl6.idr	promoter-TSS (NM_028145)	promoter-TSS (NM_028145)	-407.0	NM_028145	72184.0	Mm.153585	NM_028145	ENSMUSG00000035298	Klhl35	2810406K13Rik	kelch-like 35	protein-coding	-0.732458445558767	-0.721789100469496	-0.0384664135947285	-0.414842732356788	-0.731792258140532	-0.721001499087016	-0.724512879107242	-0.727509373689817	-3.26489710342893	0.253346829850263	1
Merged-chr7-98294282-3	chr7	98294169	98294369	+	727.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360615, intron 1 of 10)	L1ME2z|LINE|L1	15273.0	NM_001360616	66190.0	Mm.334041	NM_025408	ENSMUSG00000030760	Acer3	1110057L18Rik|5430429L08Rik|AV015045|Phca|aPHC	alkaline ceramidase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-108768367-2	chr12	108768267	108768467	+	944.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24944.0	NM_009537	22632.0	Mm.3868	NM_009537	ENSMUSG00000021264	Yy1	AW488674|NF-E1	YY1 transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-53613663-2	chr8	53613563	53613763	+	586.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146208, intron 2 of 9)	intron (NM_146208, intron 2 of 9)	25402.0	NM_146208	234258.0	Mm.281749	NM_146208	ENSMUSG00000039396	Neil3	AI449477|BC034753|C85903	nei like 3 (E. coli)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-89323917-2	chr15	89323817	89324017	+	610.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_182928, intron 2 of 2)	intron (NM_182928, intron 2 of 2)	1197.0	NM_182928	223780.0	Mm.210541	NM_182928	ENSMUSG00000054136	Adm2	Am2|IMD|Imdn	adrenomedullin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46150911-2	chr8	46150811	46151011	+	627.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12740.0	NM_025747	66756.0	Mm.133623	NM_025747	ENSMUSG00000031631	Cfap97	1110068E21Rik|4933411K20Rik|AW049273|Kiaa1430	cilia and flagella associated protein 97	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-40684271-4	chr19	40684164	40684364	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009848, intron 1 of 9)	intron (NM_009848, intron 1 of 9)	24494.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	5.71056148624844	5.54485283496968	4.99656034904806	5.18999402253847	5.61504915121207	6.13070544937744	5.56622620042477	5.27610941121425	0.321941415023766	0.275665710994627	0.77982362793126
Merged-chr3-32333175-4	chr3	32333073	32333273	+	668.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32316.0	NR_027966	67576.0	Mm.435324	NR_027966		4930429B21Rik	-	RIKEN cDNA 4930429B21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-101926861-2	chr5	101926761	101926961	+	842.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 17 of 66)	intron (NM_172882, intron 17 of 66)	143060.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-64285767-4	chr7	64285665	64285865	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1905.0	NM_172742	233315.0	Mm.214959	NM_172742	ENSMUSG00000030522	Mtmr10	BB128963|C79734	myotubularin related protein 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-26636869-4	chr14	26636779	26636979	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1255.0	NM_007479	11843.0	Mm.297768	NM_007479	ENSMUSG00000021877	Arf4	AA407803	ADP-ribosylation factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-127289067-3	chr3	127288964	127289164	+	965.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001327938, intron 1 of 47)	RMER5|LTR|ERV1	119994.0	NM_001327939	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-105057816-2	chr3	105057716	105057916	+	805.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	-4670.0	NM_030249	80281.0	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	1.30547386605879	1.9090472988022	2.04912562648533	0.970999750578918	1.3157503434357	1.92467693163646	2.06701522055966	0.973889834298724	0.0403456083316296	0.973795912839555	0.998431161219273
Merged-chr15-62133108-2	chr15	62133008	62133208	+	707.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_132746, intron 2 of 6)	intron (NR_132746, intron 2 of 6)	86343.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-15993183-1	chr19	15993083	15993283	+	587.0	f1_balb.idr	intron (NR_045355, intron 2 of 2)	MLT1C|LTR|ERVL-MaLR	8108.0	NR_045355	100502653.0	Mm.149980	NR_045355	ENSMUSG00000097557	C130060C02Rik	-	RIKEN cDNA C130060C02 gene	ncRNA	-0.705227906954334	-0.694617995685733	-0.698095494655617	-0.0622201186286493	-0.704566054407896	-0.325937378500551	-0.697328622082751	-0.700309049962851	-1.09952527353488	0.708418782035297	1
Merged-chr6-92988375-3	chr6	92988226	92988426	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015530, intron 1 of 2)	intron (NR_015530, intron 1 of 2)	47744.0	NR_015530	330385.0	Mm.483472	NR_015530	ENSMUSG00000097462	9530026P05Rik	B430306B02	RIKEN cDNA 9530026P05 gene	ncRNA	3.04075090747662	2.77370649923016	3.09504605463078	2.73488695588308	4.08879206121812	4.66612223493594	4.3092433481481	4.0357167701361	2.02434598225503	7.89929991150002e-05	0.00255690108826018
Merged-chr7-80269196-4	chr7	80269071	80269271	+	923.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178070)	promoter-TSS (NM_178070)	-484.0	NM_178070	233405.0	Mm.322870	NM_178070	ENSMUSG00000030534	Vps33b	-	vacuolar protein sorting 33B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-98832610-4	chr13	98832512	98832712	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17163.0	NM_172591	218503.0	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-28917992-4	chr19	28917894	28918094	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45926.0	NM_028922	74411.0	Mm.441887	NM_028922	ENSMUSG00000040105	Plpp6	4932443D16Rik|Ppapdc2	phospholipid phosphatase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-120522862-3	chr5	120522758	120522958	+	697.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177595, intron 8 of 13)	intron (NM_001177595, intron 8 of 13)	11666.0	NM_001177594	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-25626919-2	chr2	25626819	25627019	+	962.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007995, intron 4 of 9)	intron (NM_007995, intron 4 of 9)	1055.0	NM_007995	14133.0	Mm.10510	NM_007995	ENSMUSG00000026938	Fcna	Fcn1	ficolin A	protein-coding	-1.13129152895393	-0.760314410582534	-1.11939102144509	-1.12796902636669	-1.1307976245896	-0.753160406462703	-1.11683883442949	-1.12699414366937	0.0387695613834025	0.99058038935327	1
Merged-chr4-147927868-4	chr4	147927777	147927977	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011122, intron 6 of 18)	intron (NM_011122, intron 6 of 18)	8899.0	NM_011122	18822.0	Mm.23951	NM_011122	ENSMUSG00000019055	Plod1	2410042F05Rik|AI854890|AV007929|Lh1|Plod	procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-99351254-2	chr13	99351154	99351354	+	620.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173757, intron 2 of 10)	intron (NM_173757, intron 2 of 10)	6468.0	NM_173757	218506.0	Mm.30208	NM_173757	ENSMUSG00000041632	Mrps27	2610028H14Rik	mitochondrial ribosomal protein S27	protein-coding	0.151254335284827	0.911463264923398	0.164872105797694	0.599297355163882	0.304802213670398	0.17295388258748	0.166329272488664	0.71670611897064	-0.870396896115153	0.662083060303087	1
Merged-chr8-120529375-3	chr8	120529317	120529517	+	826.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198671, intron 1 of 15)	L1MB5|LINE|L1	-6440.0	NM_001145897	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30998235-4	chr7	30998155	30998355	+	847.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR22_Mus|LTR|ERVK	16334.0	NM_001242647	76415.0	Mm.259739	NM_175240	ENSMUSG00000046826	Fam187b	1700020B09Rik|Tmem162	family with sequence similarity 187, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-79324240-1	chr8	79324140	79324340	+	753.0	f0_balb.idr	Intergenic	Intergenic	29162.0	NR_045823	234479.0	Mm.238026	NR_045822		Gm4890	A630049P17	predicted gene 4890	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-110269797-2	chr7	110269697	110269897	+	810.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009302, intron 6 of 11)	intron (NM_009302, intron 6 of 11)	48094.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-12941812-4	chr18	12941738	12941938	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207530)	promoter-TSS (NM_207530)	3.0	NM_207530	64291.0	Mm.259470	NM_020573	ENSMUSG00000044252	Osbpl1a	G430090F17Rik|Gm753|ORP-1|Osbpl1b	oxysterol binding protein-like 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-151342426-2	chr1	151342326	151342526	+	548.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2060.0	NM_001359262	117198.0	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31407053-2	chr14	31406953	31407153	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347585, intron 2 of 7)	B1_Mur1|SINE|Alu	10624.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-53600069-4	chr19	53600059	53600259	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007790)	promoter-TSS (NM_007790)	-237.0	NM_007790	13006.0	Mm.14910	NM_007790	ENSMUSG00000024974	Smc3	Bamacan|Cspg6|HCAP|Mmip1|SMC-3|SmcD	structural maintenance of chromosomes 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-9747742-2	chr3	9747642	9747842	+	676.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_053182, intron 2 of 7)	Lx|LINE|L1	85937.0	NM_053182	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-75924117-2	chr15	75924017	75924217	+	691.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_031201)	TTS (NM_031201)	-2557.0	NM_025412	66194.0	Mm.250599	NM_025412	ENSMUSG00000022571	Pycrl	1110058B13Rik|2700073G24Rik|Pycr3	pyrroline-5-carboxylate reductase-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131638261-2	chr1	131638122	131638322	+	736.666626	f0_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007799)	promoter-TSS (NM_007799)	-92.0	NM_007799	13034.0	Mm.230249	NM_007799	ENSMUSG00000004552	Ctse	A430072O03Rik|C920004C08Rik|CE|CatE	cathepsin E	protein-coding	-0.320772842907384	-0.300440626839046	-0.307009826346157	-0.31213824761647	0.139397978147946	0.848995496981258	-0.305553492069628	-0.31123845912169	4.06906703171475	0.0890341885280499	1
Merged-chr4-149804488-2	chr4	149804388	149804588	+	550.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30221.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-82357980-4	chr3	82357902	82358102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081230)	promoter-TSS (NM_001081230)	-70.0	NM_001081230	213582.0	Mm.271269	NM_001081230	ENSMUSG00000033900	Map9	5033421J10Rik|5330427D05Rik|ASAP|Mtap9	microtubule-associated protein 9	protein-coding	5.16991207174196	5.55430901117642	5.1064804919968	4.82713069819134	5.44298384934192	5.4979663374751	4.90599876898836	4.76718082435569	0.00755524265980281	0.981283674443082	0.998431161219273
Merged-chr13-47234059-1	chr13	47233959	47234159	+	901.0	f1_c57bl6.idr	intron (NM_146042, intron 4 of 7)	intron (NM_146042, intron 4 of 7)	40056.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	-0.325523219287089	-0.0729870329188683	-0.698346409607964	-0.701003629601155	-0.704756005197865	-0.694122997021887	-0.69758651694788	-0.700539528171548	-3.25652399919928	0.253452741391918	1
Merged-chr1-192091450-2	chr1	192091350	192091550	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011633, intron 1 of 9)	intron (NM_011633, intron 1 of 9)	1149.0	NM_011633	22033.0	Mm.380491	NM_011633		Traf5	-	TNF receptor-associated factor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-44408790-4	chr19	44408702	44408902	+	934.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-1093.0	NM_009127	20249.0	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-78473551-2	chr10	78473451	78473651	+	589.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8603.0	NM_172134	216134.0	Mm.206159	NM_172134	ENSMUSG00000032788	Pdxk	2310036D04Rik|AA119688|C77999	pyridoxal (pyridoxine, vitamin B6) kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-110770823-4	chr5	110770717	110770917	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173066)	promoter-TSS (NM_173066)	-100.0	NM_173066	75560.0	Mm.270487	NM_029337	ENSMUSG00000029505	Ep400	1700020J09Rik|AU023439|mDomino|mKIAA1498|p400	E1A binding protein p400	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-98702990-4	chr7	98702844	98703044	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028410)	promoter-TSS (NM_028410)	-16.0	NR_144495	100040769.0	Mm.126401	NR_144495		Gm15506	-	predicted gene 15506	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115155179-2	chr5	115155079	115155279	+	643.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175403, intron 1 of 4)	intron (NM_175403, intron 1 of 4)	2997.0	NM_175403	109154.0	Mm.153963	NM_175403	ENSMUSG00000048578	Mlec	2410014A08Rik|AI850530|ESTM19|X83352|mKIAA0152	malectin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19885384-2	chr7	19885284	19885484	+	710.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177036, intron 2 of 6)	RSINE1|SINE|B4	2581.0	NM_177036	319930.0	Mm.215839	NM_177036	ENSMUSG00000049848	Ceacam19	C130022P09Rik|CEAL1	carcinoembryonic antigen-related cell adhesion molecule 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-13839326-4	chr6	13839234	13839434	+	930.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145066, intron 1 of 3)	intron (NM_145066, intron 1 of 3)	608.0	NM_001330666	64450.0	Mm.167625	NM_145066	ENSMUSG00000048216	Gpr85	2900026B03Rik	G protein-coupled receptor 85	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-60810804-4	chr2	60810692	60810892	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001141932, intron 2 of 14)	intron (NM_001141932, intron 2 of 14)	70646.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-115799474-1	chr3	115799374	115799574	+	576.0	f0_balb.idr	Intergenic	Intergenic	-84419.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-143996187-1	chr1	143996087	143996287	+	594.0	f0_balb.idr	Intergenic	Lx10|LINE|L1	7962.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-21240971-3	chr11	21240866	21241066	+	767.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290628, intron 1 of 22)	intron (NM_001290628, intron 1 of 22)	1934.0	NM_001290628	245944.0	Mm.170103	NM_139061	ENSMUSG00000020128	Vps54	Hcc8|Vps54l|mSLP8|wr	VPS54 GARP complex subunit	protein-coding	2.92199287373895	2.55282926601427	3.61164332730851	2.24263988390436	1.3303357665435	2.57283767442935	3.40727554678422	2.09027223246743	-0.657605528611681	0.44626924339251	0.913813582129366
Merged-chr2-90474986-4	chr2	90474884	90475084	+	989.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001135657, exon 2 of 26)	exon (NM_001135657, exon 2 of 26)	4190.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71789241-2	chr8	71789143	71789343	+	955.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63562.0	NM_028715	74015.0	Mm.22025	NM_028715	ENSMUSG00000070000	Fcho1	3322402E17Rik|N28152	FCH domain only 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-121480706-2	chr2	121480606	121480806	+	766.299988	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-6683.0	NM_001081975	100034361.0	Mm.270393	NM_001081975	ENSMUSG00000048222	Mfap1b	-	microfibrillar-associated protein 1B	protein-coding	1.00385311405833	0.537367521301455	1.00020450975763	0.522136917908696	1.10681123156555	0.742909168155808	1.23371296619091	0.523300065947466	0.743521750647176	0.651596483050518	1
Merged-chr4-117908446-3	chr4	117908307	117908507	+	968.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146152, intron 2 of 19)	intron (NM_146152, intron 2 of 19)	6592.0	NM_146152	230673.0	Mm.287810	NM_146152	ENSMUSG00000033365	Ipo13	Imp13|Kap13|Ranbp13	importin 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-156294362-2	chr2	156294262	156294462	+	599.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172674, intron 13 of 17)	intron (NM_172674, intron 13 of 17)	-18111.0	NM_027585	70873.0	Mm.475234	NM_027585	ENSMUSG00000038085	Cnbd2	4921517L17Rik|5430421B09Rik|Cris	cyclic nucleotide binding domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-124262023-2	chr8	124261898	124262098	+	699.833374	f0_balb.idr|f1_balb.idr	intron (NM_139272, intron 1 of 15)	intron (NM_139272, intron 1 of 15)	30604.0	NM_139272	108148.0	Mm.33808	NM_139272	ENSMUSG00000089704	Galnt2	AI480629	polypeptide N-acetylgalactosaminyltransferase 2	protein-coding	1.80251956375094	1.49762756806198	1.64804292885755	1.60697217590851	2.35814724105865	2.03181984379059	2.48078345463369	1.90567682298308	1.64778429798779	0.0871100803976424	0.453523805082254
Merged-chr1-87851424-3	chr1	87851295	87851495	+	879.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-1892.0	NM_177646	227333.0	Mm.277217	NM_177646	ENSMUSG00000070738	Dgkd	AI841987|D330025K09|DGKdelta|dgkd-2	diacylglycerol kinase, delta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-155070531-2	chr4	155070431	155070631	+	547.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001042407, exon 4 of 6)	exon (NM_001042407, exon 4 of 6)	3501.0	NM_001042407	668173.0	Mm.133114	NM_001042407	ENSMUSG00000029047	Pex10	AV128229|Gm142	peroxisomal biogenesis factor 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69364616-3	chr11	69364475	69364675	+	873.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146019, intron 2 of 39)	intron (NM_146019, intron 2 of 39)	4851.0	NM_146019	216848.0	Mm.178246	NM_146019	ENSMUSG00000018474	Chd3	2600010P09Rik|AF020312|Chd7|Prp7|Prp9-1	chromodomain helicase DNA binding protein 3	protein-coding	1.01120867639101	0.306104951975378	0.299110950966653	0.293700855890692	0.776673428511735	0.815064689955584	0.300655237269037	0.608149015954345	0.629949986839071	0.740647783084129	1
Merged-chr8-69121513-2	chr8	69121480	69121680	+	847.375	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19373.0	NM_199364	211134.0	Mm.409446	NM_199364	ENSMUSG00000036306	Lzts1	F37|FEZ1|PSD-Zip70	leucine zipper, putative tumor suppressor 1	protein-coding	-0.95883781889115	-0.942168286525863	-0.769210494749691	-0.955001151058993	-0.958267162929849	-0.939470530339747	-0.951799127055168	-0.30083684306821	2.02455425861614	0.511661354010211	1
Merged-chr15-6369364-6	chr15	6369232	6369432	+	846.194458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001008702, intron 1 of 13)	intron (NM_001008702, intron 1 of 13)	-17416.0	NM_023118	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-12761316-4	chr18	12761218	12761418	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252490, intron 10 of 13)	intron (NM_001252490, intron 10 of 13)	19963.0	NM_027687	71132.0	Mm.179740	NM_027687	ENSMUSG00000024430	Cabyr	1700016C01Rik|4933421A18Rik|CBP86|FSP-2	calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-53637793-2	chr8	53637693	53637893	+	671.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146208, intron 1 of 9)	intron (NM_146208, intron 1 of 9)	1272.0	NM_146208	234258.0	Mm.281749	NM_146208	ENSMUSG00000039396	Neil3	AI449477|BC034753|C85903	nei like 3 (E. coli)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-67985216-4	chr7	67985118	67985318	+	979.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010513, intron 1 of 20)	L1MB3|LINE|L1	32961.0	NM_010513	16001.0	Mm.275742	NM_010513	ENSMUSG00000005533	Igf1r	A330103N21Rik|CD221|D930020L01|IGF-1R|hyft	insulin-like growth factor I receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-74967772-2	chr15	74967680	74967880	+	858.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12674.0	NM_001164040	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	0.286177763208455	0.314370764282741	0.67638292262895	1.41445570105568	0.28797072340671	0.316410775139885	0.684940841083216	0.788741974301529	-1.19788830732005	0.515793083226362	1
Merged-chr8-84846996-4	chr8	84846901	84847101	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007591)	promoter-TSS (NM_007591)	-70.0	NM_007591	12317.0	Mm.1971	NM_007591	ENSMUSG00000003814	Calr	CRT|Calregulin	calreticulin	protein-coding	6.97493909623458	6.76511801469779	7.15466183969837	7.24229079143536	7.02362509920953	6.83127599854283	7.4086714352956	7.10314705845858	0.0631346727834639	0.72830662170302	0.998431161219273
Merged-chr18-38922474-3	chr18	38922375	38922575	+	910.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033789, intron 3 of 4)	intron (NM_001033789, intron 3 of 4)	-3776.0	NM_010197	14164.0	Mm.241282	NM_010197	ENSMUSG00000036585	Fgf1	Dffrx|Fam|Fgf-1|Fgfa	fibroblast growth factor 1	protein-coding	-1.08681686225527	-1.06505171483667	-1.07664717469459	-1.08334602956848	-0.935709748644639	-1.06253893031385	-0.48768075486768	-1.08298057675382	2.82610472687119	0.369930880125731	1
Merged-chr7-68157619-4	chr7	68157518	68157718	+	961.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010513, intron 2 of 20)	intron (NM_010513, intron 2 of 20)	106615.0	NM_030101	78444.0	Mm.425468	NM_030101	ENSMUSG00000030553	Pgpep1l	C330024D12Rik	pyroglutamyl-peptidase I-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-110616113-2	chr8	110616013	110616213	+	743.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	-2454.0	NR_151674	234729.0	Mm.274894	NM_146216	ENSMUSG00000010936	Vac14	AA959718|BC032215|D8Wsu151e|Tax1bp2|Trx|ingls	Vac14 homolog (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-31932685-2	chr9	31932585	31932785	+	708.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19400.0	NM_013800	12023.0	Mm.261044	NM_013800	ENSMUSG00000032033	Barx2	2310006E12Rik|Barx2b	BarH-like homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30325592-4	chr7	30325513	30325713	+	881.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-3238.0	NM_001033140	68332.0	Mm.6844	NM_001033140	ENSMUSG00000074211	Sdhaf1	0610010E21Rik|AI430885|AW490662|Lyrm8	succinate dehydrogenase complex assembly factor 1	protein-coding	2.8005347746195	1.65924305091132	3.78915739595133	2.85363196973673	3.18849459498339	2.45329277183098	3.93487109840498	4.44944089127191	1.1156568025076	0.128620495763896	0.561153698674326
Merged-chr10-78184499-2	chr10	78184399	78184599	+	991.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029546, intron 1 of 20)	intron (NM_029546, intron 1 of 20)	650.0	NM_029546	110816.0	Mm.103522	NM_029546	ENSMUSG00000032834	Pwp2	6530411D08Rik|Pwp2h|wdp103	PWP2 periodic tryptophan protein homolog (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-58507870-4	chr16	58507756	58507956	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357433, intron 1 of 10)	intron (NM_001357433, intron 1 of 10)	15570.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-92674928-3	chr16	92674825	92675025	+	840.305542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111022, intron 4 of 6)	intron (NM_001111022, intron 4 of 6)	22404.0	NM_001111023	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-45250075-4	chr9	45249968	45250168	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001198971)	TTS (NM_001198971)	16639.0	NR_106054	102466803.0		NR_106054	ENSMUSG00000098361	Mir7086	Gm27643|mmu-mir-7086	microRNA 7086	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-83408387-3	chr15	83408264	83408464	+	924.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358643, intron 1 of 9)	MTEb|LTR|ERVL-MaLR	24486.0	NM_011862	23970.0	Mm.23978	NM_011862	ENSMUSG00000016664	Pacsin2	AI197433	protein kinase C and casein kinase substrate in neurons 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-31939810-2	chr16	31939710	31939910	+	634.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172822, intron 1 of 2)	B1F|SINE|Alu	5959.0	NM_172822	239827.0	Mm.440388	NM_172822	ENSMUSG00000045625	Pigz	F630022B06Rik	phosphatidylinositol glycan anchor biosynthesis, class Z	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-12875621-1	chr10	12875521	12875721	+	659.0	f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-13886.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	1.65257326792416	1.64857620037845	1.13333967285498	1.8416621371995	1.470392266952	1.66189047774139	0.924888727809294	0.911175091193942	-1.09458795913208	0.392608698749597	0.881258234308592
Merged-chr2-93048563-2	chr2	93048463	93048663	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2419.0	NM_001177536	100042784.0	Mm.102816	NM_001177536	ENSMUSG00000075028	Prdm11	8030443D09Rik|AA163972|Gm707	PR domain containing 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-178854202-2	chr2	178854102	178854302	+	567.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	423687.0	NM_198656	381409.0	Mm.330860	NM_198656	ENSMUSG00000039155	Cdh26	Gm1010	cadherin-like 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-155062843-2	chr1	155062743	155062943	+	771.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_151545)	TTS (NR_151545)	20421.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-12925444-2	chr18	12925344	12925544	+	837.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_207530, intron 4 of 27)	intron (NM_207530, intron 4 of 27)	16397.0	NM_207530	64291.0	Mm.259470	NM_020573	ENSMUSG00000044252	Osbpl1a	G430090F17Rik|Gm753|ORP-1|Osbpl1b	oxysterol binding protein-like 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-155487948-4	chr4	155487841	155488041	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3420.0	NM_001160017	14688.0	Mm.2344	NM_008142	ENSMUSG00000029064	Gnb1	AA409223|C77571|Gnb-1	guanine nucleotide binding protein (G protein), beta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-115506837-4	chr8	115506733	115506933	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	200061.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-4569270-2	chr8	4569170	4569370	+	775.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR22_Mur|LTR|ERVK	-43900.0	NM_145591	233987.0	Mm.102799	NM_145591	ENSMUSG00000058748	Zfp958	-	zinc finger protein 958	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-66232423-1	chr14	66232323	66232523	+	717.0	f0_balb.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	-18599.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-35132275-2	chr4	35132175	35132375	+	770.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_178061, intron 1 of 3)	ORR1D1|LTR|ERVL-MaLR	-19780.0	NM_199157	387510.0	Mm.386929	NM_199157	ENSMUSG00000042993	Ifnk	-	interferon kappa	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-66143465-4	chr2	66143381	66143581	+	997.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18688.0	NM_015736	14425.0	Mm.439760	NM_015736	ENSMUSG00000026994	Galnt3	-	polypeptide N-acetylgalactosaminyltransferase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85466598-2	chr12	85466498	85466698	+	978.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2c|LINE|L2	-7292.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-91587597-4	chr12	91587525	91587725	+	827.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175335, intron 1 of 8)	intron (NM_175335, intron 1 of 8)	2024.0	NM_031391	83602.0	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126663767-2	chr8	126663704	126663904	+	875.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70368.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	-1.05877568042897	-1.03501312238488	-1.04817210678232	-1.05426068996071	-1.05810152525527	-1.03216151557194	-0.188696606725984	-1.05378786495764	3.16074139804981	0.330468818528456	1
Merged-chr3-108380897-2	chr3	108380797	108380997	+	630.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_026831)	TTS (NM_026831)	2844.0	NR_040560	100038453.0	Mm.214328	NR_040560	ENSMUSG00000074281	Gm12522	-	predicted gene 12522	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-113608961-2	chr5	113608861	113609061	+	678.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	34642.0	NM_001359060	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41987192-4	chr19	41987106	41987306	+	734.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145500, intron 1 of 2)	intron (NM_145500, intron 1 of 2)	5443.0	NM_145500	226122.0	Mm.22948	NM_145500	ENSMUSG00000025171	Ubtd1	BC016129	ubiquitin domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-98535366-3	chr7	98535252	98535452	+	946.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41130.0	NM_001113379	434215.0	Mm.323057	NM_001113379	ENSMUSG00000090958	Lrrc32	AI426318|D11S833Eh|D7H11S833E|EG434215|Garp	leucine rich repeat containing 32	protein-coding	1.0238776747038	0.619002717799628	0.607159484816906	1.09183857939977	1.03418718183099	1.7440141128907	0.609787770180284	1.09881967148035	1.47499092385901	0.334785694095056	0.835388696663455
Merged-chr17-5571371-2	chr17	5571271	5571471	+	928.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	78771.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-90902728-1	chr5	90902628	90902828	+	602.0	f1_balb.idr	Intergenic	Intergenic	-1171.0	NM_009140	20310.0	Mm.4979	NM_009140	ENSMUSG00000058427	Cxcl2	CINC-2a|GROb|Gro2|MIP-2|MIP-2a|Mgsa-b|Mip2|Scyb|Scyb2	chemokine (C-X-C motif) ligand 2	protein-coding	1.39135731439394	0.473637635900686	0.461147626713076	0.451324864235814	1.55162469140619	1.35302894397208	0.463925231992836	0.453053084295832	1.12876668384281	0.53498731339942	0.95286627222167
Merged-chr18-61322795-2	chr18	61322695	61322895	+	601.900024	f1_balb.idr|f1_c57bl6.idr	intron (NM_133249, intron 2 of 11)	MIRb|SINE|MIR	75105.0	NR_029879	723889.0		NR_029879	ENSMUSG00000105200	Mir378a	Mir378|Mirn378|mmu-mir-378|mmu-mir-378a	microRNA 378a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-97929178-4	chr4	97929087	97929287	+	939.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010905, intron 2 of 10)	intron (NM_010905, intron 2 of 10)	151561.0	NM_010905	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-112292115-1	chr5	112292015	112292215	+	570.0	f1_c57bl6.idr	intron (NM_001326590, intron 1 of 5)	intron (NM_001326590, intron 1 of 5)	15424.0	NM_009419	22022.0	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	-1.18378942727406	-1.15669478905697	-0.457913181653105	-1.17806440097404	-1.18323730008524	-1.15415234459186	-1.16577117532349	-1.17633933179771	-2.81844548480871	0.412768592413622	1
Merged-chr8-11464365-4	chr8	11464243	11464443	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011227, intron 1 of 1)	intron (NM_011227, intron 1 of 1)	-13586.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-143470556-1	chr5	143470456	143470656	+	557.0	f0_balb.idr	intron (NM_144915, intron 2 of 14)	Lx8|LINE|L1	6063.0	NM_144915	231871.0	Mm.469963	NM_144915	ENSMUSG00000039206	Daglb	E330036I19Rik	diacylglycerol lipase, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10333645-1	chr19	10333545	10333745	+	729.0	f1_c57bl6.idr	Intergenic	Intergenic	-28768.0	NM_198114	269060.0	Mm.329718	NM_198114	ENSMUSG00000035735	Dagla	Nsddr	diacylglycerol lipase, alpha	protein-coding	-1.27413311947854	-1.24644865794383	-1.09394607474543	-0.840902403408443	-1.27369540513762	-1.24420577222712	-1.25445563602962	-1.26377861929758	-2.39351388450012	0.472438750839249	1
Merged-chr13-67332516-4	chr13	67332429	67332629	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177622)	promoter-TSS (NM_177622)	31.0	NM_177622	218314.0	Mm.289695	NM_177622	ENSMUSG00000057842	Zfp595	A230042K10Rik|Rslcan23	zinc finger protein 595	protein-coding	5.33953735203286	4.96025780957104	4.36105083087015	5.22961586789675	4.65519557666515	4.9495082004607	4.71010494799325	4.00366513965963	-0.501221320994916	0.178022130049899	0.648362827425708
Merged-chr2-32610962-2	chr2	32610862	32611062	+	652.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025310, intron 2 of 5)	intron (NM_001025310, intron 2 of 5)	3977.0	NR_110347	50935.0	Mm.88831	NM_016973	ENSMUSG00000026811	St6galnac6	ST6GalNAcVI|Siat7f	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81318211-2	chr10	81318111	81318311	+	806.333374	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008844, exon 18 of 18)	3' UTR (NM_008844, exon 18 of 18)	-2892.0	NM_027381	70312.0	Mm.87628	NM_027381	ENSMUSG00000034889	Cactin	2510012J08Rik	cactin, spliceosome C complex subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-24978594-2	chr2	24978494	24978694	+	826.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146251, intron 1 of 34)	intron (NM_146251, intron 1 of 34)	2561.0	NM_146251	241274.0	Mm.389243	NM_146251	ENSMUSG00000036833	Pnpla7	BC027342|E430013P11Rik|Nre	patatin-like phospholipase domain containing 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107676249-2	chr9	107676149	107676349	+	683.333374	f1_balb.idr|f1_c57bl6.idr	exon (NM_008140, exon 7 of 9)	exon (NM_008140, exon 7 of 9)	3343.0	NM_008140	14685.0	Mm.284853	NM_008140	ENSMUSG00000034837	Gnat1	Gnat-1|Ird1|Ird2|Tralpha|irdc|irdr|transducin	guanine nucleotide binding protein, alpha transducing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-98348819-3	chr5	98348717	98348917	+	712.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024614, intron 2 of 5)	intron (NM_001024614, intron 2 of 5)	19513.0	NM_001024614	75784.0	Mm.443240	NM_001024614	ENSMUSG00000057816	1700007G11Rik	4930428O21Rik	RIKEN cDNA 1700007G11 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-157131208-4	chr2	157131103	157131303	+	941.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001139520, intron 1 of 16)	intron (NM_001139520, intron 1 of 16)	4019.0	NM_001139520	56045.0	Mm.248478	NM_018851	ENSMUSG00000027639	Samhd1	E330031J07Rik|Mg11	SAM domain and HD domain, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19299454-3	chr7	19299366	19299566	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	8397.0	NM_001025364	20167.0	Mm.24142	NM_013648	ENSMUSG00000030401	Rtn2	MMS10-P|Ms10p|NSPLI|Nspl1	reticulon 2 (Z-band associated protein)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132274332-4	chr4	132274240	132274440	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025579)	promoter-TSS (NM_025579)	-35.0	NM_025579	66464.0	Mm.331926	NM_025579	ENSMUSG00000028899	Taf12	20kDa|2810422D08Rik|AW557038|Taf2J	TATA-box binding protein associated factor 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-12221827-1	chr18	12221727	12221927	+	934.0	f1_balb.idr	exon (NM_008720, exon 3 of 25)	exon (NM_008720, exon 3 of 25)	14559.0	NM_008720	18145.0	Mm.3484	NM_008720	ENSMUSG00000024413	Npc1	A430089E03Rik|C85354|D18Ertd139e|D18Ertd723e|lcsd|nmf164|spm	NPC intracellular cholesterol transporter 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-5768290-5	chr2	5768114	5768314	+	685.033325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53452.0	NM_177343	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-140905495-3	chr4	140905405	140905605	+	848.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008812)	promoter-TSS (NM_008812)	-855.0	NM_008812	18600.0	Mm.2296	NM_008812	ENSMUSG00000028927	Padi2	Pdi|Pdi2|mKIAA0994	peptidyl arginine deiminase, type II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-20494235-4	chr13	20494141	20494341	+	998.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198093, intron 1 of 6)	intron (NM_198093, intron 1 of 6)	21251.0	NM_198093	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	1.2224085293289	0.696605418242495	0.683368273987505	1.68556372032216	0.837696452919063	1.2824576519053	0.686309130465132	1.61314780805147	0.042714367272374	0.977464032839347	0.998431161219273
Merged-chr5-114639542-4	chr5	114639456	114639656	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022017, intron 3 of 15)	intron (NM_022017, intron 3 of 15)	18865.0	NM_022017	63873.0	Mm.266450	NM_022017	ENSMUSG00000014158	Trpv4	0610033B08Rik|OTRPC4|Trp12|VR-OAC|VRL-2|VROAC	transient receptor potential cation channel, subfamily V, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-76646775-2	chr2	76646675	76646875	+	614.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011871, intron 2 of 7)	intron (NM_011871, intron 2 of 7)	1219.0	NM_011871	23992.0	Mm.277250	NM_011871	ENSMUSG00000002731	Prkra	AV120107|PRK|Pact|RAX|lear	protein kinase, interferon inducible double stranded RNA dependent activator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135962950-1	chr4	135962850	135963050	+	567.0	f1_c57bl6.idr	promoter-TSS (NM_001356493)	promoter-TSS (NM_001356493)	-775.0	NM_001356493	74246.0	Mm.247946	NM_178389	ENSMUSG00000028671	Gale	2310002A12Rik|AI323962	galactose-4-epimerase, UDP	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-57760628-2	chr9	57760528	57760728	+	660.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_007713, intron 3 of 12)	intron (NM_007713, intron 3 of 12)	5232.0	NM_007713	102414.0	Mm.25720	NM_007713	ENSMUSG00000032316	Clk3	AI256811	CDC-like kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-95509623-5	chr10	95509530	95509730	+	760.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20A3_MM|LTR|ERVK	-5532.0	NM_080560	93765.0	Mm.371667	NM_080560	ENSMUSG00000074781	Ube2n	1500026J17Rik|AL022654|BB101821|UBC13	ubiquitin-conjugating enzyme E2N	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-69544047-4	chr18	69543950	69544150	+	893.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 6 of 19)	intron (NM_001361128, intron 6 of 19)	197890.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-64471758-4	chr17	64471649	64471849	+	987.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	30943.0	NR_105848	102465228.0		NR_105848	ENSMUSG00000098984	Mir6420	Gm28007|mmu-mir-6420	microRNA 6420	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-145257515-4	chr4	145257415	145257615	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-10645.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-138848842-3	chr1	138848707	138848907	+	812.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1228.0	NM_010714	16876.0	Mm.250732	NM_010714	ENSMUSG00000019230	Lhx9	3110009O07Rik|BB104635|LH2B	LIM homeobox protein 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-106198971-3	chr8	106198873	106199073	+	848.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001357382)	TTS (NM_001357382)	11960.0	NM_001007567	66432.0	Mm.269029	NM_001007567	ENSMUSG00000033106	Slc7a6os	2010007L18Rik|2400002F02Rik	solute carrier family 7, member 6 opposite strand	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-129437861-3	chr3	129437765	129437965	+	961.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4192.0	NR_033594	435755.0	Mm.430561	NR_033594	ENSMUSG00000105712	Pou5f1-rs4	EG435755|Gm5712|Oct4P1|Otf3-rs4|Otf3d	POU domain, class 5, transcription factor 1, related sequence 4	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-53840364-2	chr1	53840264	53840464	+	890.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001883, intron 22 of 28)	intron (NM_001001883, intron 22 of 28)	-9060.0	NR_106149	102465783.0		NR_106149	ENSMUSG00000098443	Mir7681	Gm27806|mmu-mir-7681	microRNA 7681	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-79202694-2	chr9	79202594	79202794	+	669.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	316608.0	NR_045336	100038575.0	Mm.367838	NR_045336	ENSMUSG00000111765	Gm10635	-	predicted gene 10635	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-103347165-1	chr12	103347065	103347265	+	943.0	f0_c57.idr	intron (NM_023049, intron 1 of 9)	intron (NM_023049, intron 1 of 9)	8836.0	NM_023049	65256.0	Mm.27159	NM_023049	ENSMUSG00000021200	Asb2	1110008E15Rik	ankyrin repeat and SOCS box-containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-74390110-3	chr1	74389991	74390191	+	852.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1518.0	NM_153088	227292.0	Mm.165042	NM_153088	ENSMUSG00000026176	Ctdsp1	GIP|NLIIF|Nif3|SCP1	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80101225-4	chr10	80101125	80101325	+	997.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359635)	promoter-TSS (NM_001359635)	-38.0	NM_001359635	216161.0	Mm.262102	NM_183426	ENSMUSG00000035673	Sbno2	BC019206|F730040C21|Sno|Stno	strawberry notch 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120135911-1	chr8	120135811	120136011	+	557.0	f1_c57bl6.idr	intron (NM_172286, intron 1 of 12)	intron (NM_172286, intron 1 of 12)	-9018.0	NM_001163760	234797.0	Mm.101958	NM_172286	ENSMUSG00000031824	6430548M08Rik	AW049007|Kiaa0513|mKIAA0513	RIKEN cDNA 6430548M08 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-47271783-1	chr19	47271683	47271883	+	767.0	f1_balb.idr	intron (NM_008018, intron 13 of 14)	intron (NM_008018, intron 13 of 14)	1806.0	NR_105961	102466782.0		NR_105961	ENSMUSG00000098786	Mir6995	Gm27576|mmu-mir-6995	microRNA 6995	ncRNA	-1.17367364971587	-1.14665061133654	-1.15856004380685	-1.16834280623128	-1.17310571790619	-1.14406978763884	-0.42938571406771	-1.16659169643457	2.89727187181404	0.396361616615464	1
Merged-chr8-73242248-4	chr8	73242136	73242336	+	959.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010687, intron 1 of 14)	intron (NM_010687, intron 1 of 14)	111304.0	NM_001317391	16795.0	Mm.324371	NM_010687	ENSMUSG00000004383	Large1	BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd	LARGE xylosyl- and glucuronyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-8842976-4	chr4	8842874	8843074	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355382, intron 18 of 36)	L1MA5A|LINE|L1	91650.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-64190953-4	chr1	64190856	64191056	+	922.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69567.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-90703728-2	chr6	90703628	90703828	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356440, intron 1 of 13)	intron (NM_001356440, intron 1 of 13)	12801.0	NM_001134383	232227.0	Mm.196943	NM_182784	ENSMUSG00000034312	Iqsec1	AW561907|BC026481|BRAG2|D6Ertd349e|cI-43	IQ motif and Sec7 domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-24970535-2	chr2	24970435	24970635	+	736.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355561, intron 7 of 7)	intron (NM_001355561, intron 7 of 7)	4563.0	NM_001031808	107733.0	Mm.23010	NM_001031808	ENSMUSG00000036850	Mrpl41	MRP-L27|Rpml27	mitochondrial ribosomal protein L41	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-106803296-2	chr5	106803196	106803396	+	544.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-106466.0	NM_026856	52397.0	Mm.249474	NM_026856	ENSMUSG00000049606	Zfp644	1110068L01Rik|AA408882|BM-005|D5Ertd689e|Zep-2	zinc finger protein 644	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-34963822-4	chr13	34963674	34963874	+	720.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026947)	promoter-TSS (NM_026947)	35.0	NM_026947	69123.0	Mm.482475	NM_026947	ENSMUSG00000021416	Eci3	1810022C23Rik|Kseg2	enoyl-Coenzyme A delta isomerase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-68550446-2	chr11	68550346	68550546	+	642.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001004435, intron 18 of 19)	Lx8|LINE|L1	-5740.0	NM_146004	215723.0	Mm.131205	NM_146004	ENSMUSG00000048329	Mfsd6l	-	major facilitator superfamily domain containing 6-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-77837723-4	chr18	77837614	77837814	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013831, intron 2 of 14)	intron (NM_013831, intron 2 of 14)	-41324.0	NR_152167	619308.0	Mm.490456	NM_001033812		F830208F22Rik	-	RIKEN cDNA F830208F22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-4738384-1	chr7	4738284	4738484	+	753.0	f1_c57bl6.idr	Intergenic	RMER6A|LTR|ERVK	-1743.0	NM_146177	232811.0	Mm.247844	NM_146177	ENSMUSG00000059851	Kmt5c	BC024816|Suv4-20h2|Suv420h2	lysine methyltransferase 5C	protein-coding	1.30930723607077	0.454207322992692	0.444033881515434	0.436089335998891	0.740939247578645	1.38050490821997	0.446289439957645	0.929184223577679	0.845648537206982	0.629720426673416	0.981201918729827
Merged-chr13-95679308-3	chr13	95679155	95679355	+	916.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027711, intron 17 of 35)	intron (NM_027711, intron 17 of 35)	-17665.0	NM_010170	14064.0	Mm.440952	NM_010170	ENSMUSG00000021675	F2rl2	F730031A08|PAR3	coagulation factor II (thrombin) receptor-like 2	protein-coding	1.91598024967324	1.44568018907993	3.2362892486752	2.18604995846696	2.5483702746083	2.35539665842859	2.41878599862417	3.58448179158125	0.87631968907535	0.319182272147302	0.821951596143819
Merged-chr1-172473096-3	chr1	172472989	172473189	+	658.75	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2271.0	NM_029612	98365.0	Mm.150050	NM_029612	ENSMUSG00000026548	Slamf9	2310026I04Rik|AI462096|CD2F-10|CD84-H1|Cd2f10|SF2001	SLAM family member 9	protein-coding	0.428596636607911	0.119523762362182	0.115429194218477	0.373005126713057	0.23071847926005	0.120453477667753	0.402888817713899	0.575878383901008	0.647280760239146	0.740034885174877	1
Merged-chr17-10702464-2	chr17	10702364	10702564	+	765.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027032, intron 2 of 4)	GA-rich|Low_complexity|Low_complexity	137727.0	NM_027032	69310.0	Mm.18889	NM_027032	ENSMUSG00000037196	Pacrg	1700008H23Rik	PARK2 co-regulated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16043005-4	chr7	16042868	16043068	+	806.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28877.0	NM_001347559	666528.0	Mm.290718	NM_001099277	ENSMUSG00000078796	Zfp541	EG666528|Znf541	zinc finger protein 541	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-172511732-2	chr1	172511619	172511819	+	657.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9411.0	NM_027972	71870.0	Mm.78373	NM_027972	ENSMUSG00000026546	Cfap45	1700028D05Rik|Ccdc19|Nesg1	cilia and flagella associated protein 45	protein-coding	-0.947664838031408	-0.932115871510591	-0.941773555359245	-0.943990567162621	-0.947118770390509	-0.573029527551286	-0.473449032613149	-0.943603455770811	2.96368842693944	0.331565581920132	1
Merged-chr13-102866240-3	chr13	102866141	102866341	+	848.7222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175171, intron 4 of 28)	intron (NM_175171, intron 4 of 28)	105986.0	NR_130171	76624.0	Mm.426384	NR_130171	ENSMUSG00000091906	1700099I09Rik	-	RIKEN cDNA 1700099I09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-76540335-4	chr12	76540234	76540434	+	975.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153804, intron 1 of 18)	intron (NM_153804, intron 1 of 18)	6774.0	NM_153804	263406.0	Mm.291854	NM_153804	ENSMUSG00000052609	Plekhg3	BC030417	pleckstrin homology domain containing, family G (with RhoGef domain) member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-107096513-2	chr3	107096431	107096631	+	818.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5036.0	NM_008417	16490.0	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	1.3760246637911	0.755835491315297	0.734563644811615	0.717567252213462	2.03396268352154	0.760520698065172	1.38766967723228	2.41573407058596	2.95915639890212	0.0422698941202537	0.294400651889399
Merged-chr1-180946076-2	chr1	180945976	180946176	+	857.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_144794, intron 1 of 22)	intron (NM_144794, intron 1 of 22)	3558.0	NM_144794	208795.0	Mm.185518	NM_144794	ENSMUSG00000026519	Tmem63a	BC014795|Tmem64a	transmembrane protein 63a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-45331037-4	chr8	45330923	45331123	+	999.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133969, intron 1 of 10)	intron (NM_133969, intron 1 of 10)	2173.0	NM_133969	102294.0	Mm.245297	NM_133969	ENSMUSG00000079057	Cyp4v3	AU043077|AW111961|Cyp4v2	cytochrome P450, family 4, subfamily v, polypeptide 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-107566012-3	chr7	107565905	107566105	+	630.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-1428.0	NM_172907	244198.0	Mm.77425	NM_172907	ENSMUSG00000051041	Olfml1	6720478C22|AV321997|BC047207|MVAL564|ONT2|mONT2	olfactomedin-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-66281918-2	chr14	66281818	66282018	+	777.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172498)	promoter-TSS (NM_172498)	-866.0	NM_001162365	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34280814-1	chr17	34280714	34280914	+	849.0	f0_c57.idr	Intergenic	Intergenic	6957.0	NM_010378	14960.0	Mm.235338	NM_010378	ENSMUSG00000036594	H2-Aa	Aalpha|H-2Aa|H2Aa|I-Aalpha|IAalpha|Ia-1|Ia1	histocompatibility 2, class II antigen A, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-82506359-2	chr4	82506259	82506459	+	852.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113210)	promoter-TSS (NM_001113210)	-580.0	NM_008687	18028.0	Mm.317947	NM_008687	ENSMUSG00000008575	Nfib	6720429L07Rik|CTF|E030026I10Rik|NF-I/B|NF1-B|NFI-B	nuclear factor I/B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106973203-4	chr11	106973103	106973303	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26322.0	NM_010655	16647.0	Mm.12508	NM_010655	ENSMUSG00000018362	Kpna2	2410044B12Rik|IPOA1|PTAC58|Rch1	karyopherin (importin) alpha 2	protein-coding	4.86995216778443	4.04946600063932	4.24546833956695	3.45611590903026	3.03305094124381	2.75515110223955	2.46786555843594	2.97920856807251	-2.12264344278603	0.000182572186609603	0.00501623094990403
Merged-chr17-87286286-4	chr17	87286187	87286387	+	888.395874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028639, intron 1 of 19)	intron (NM_028639, intron 1 of 19)	3401.0	NM_028639	225049.0	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36508020-3	chr18	36507918	36508118	+	686.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010415, intron 3 of 5)	intron (NM_010415, intron 3 of 5)	7787.0	NM_010415	15200.0	Mm.289681	NM_010415	ENSMUSG00000024486	Hbegf	AW047313|Dtr|Dts|Hegfl	heparin-binding EGF-like growth factor	protein-coding	0.360111767962347	0.145102161107032	0.140903308179536	0.597888597056972	0.463016302845681	0.146055367990932	0.141825207921633	0.603831317046768	0.231916241767221	0.909910677840026	1
Merged-chr4-129626732-1	chr4	129626632	129626832	+	1000.0	f1_balb.idr	3' UTR (NM_001199695, exon 11 of 11)	3' UTR (NM_001199695, exon 11 of 11)	-2824.0	NM_025455	66264.0	Mm.383215	NM_025455	ENSMUSG00000028795	Ccdc28b	1110002E08Rik|1810010N17Rik	coiled coil domain containing 28B	protein-coding	-0.537415891055985	-0.660271668775278	-0.498863436015583	-0.665395401456733	-0.221795455507756	-0.475953886867879	-0.662533182663464	-0.6650076169858	1.24647592914035	0.631177122689461	1
Merged-chr2-132111520-4	chr2	132111415	132111615	+	980.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355430, intron 1 of 15)	intron (NM_001355430, intron 1 of 15)	33593.0	NM_001355431	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-34738721-4	chr13	34738591	34738791	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138746)	promoter-TSS (NM_138746)	-951.0	NM_138746	108161.0	Mm.41991	NM_138746	ENSMUSG00000038246	Fam50b	D0H6S2654E|X5L|XAP-5-like	family with sequence similarity 50, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-119881402-2	chr7	119881302	119881502	+	771.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163703, intron 1 of 2)	intron (NM_001163703, intron 1 of 2)	14056.0	NM_173408	233805.0	Mm.31539	NM_173408	ENSMUSG00000048787	Dcun1d3	1700020A13Rik|BC030335	DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae)	protein-coding	-1.84371485578039	-1.81332821174849	-1.82251738371298	-1.83006564316449	-1.84158176955426	-1.81133687985023	-1.5312619047181	-1.82871450833159	1.60090129203521	0.64914985597185	1
Merged-chr4-132628931-2	chr4	132628831	132629031	+	726.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10115.0	NM_210071	14050.0	Mm.227733	NM_010166	ENSMUSG00000028886	Eya3	AI844637	EYA transcriptional coactivator and phosphatase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-67370412-4	chr7	67370328	67370528	+	996.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357324, intron 1 of 11)	intron (NM_001357324, intron 1 of 11)	2430.0	NM_001291192	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-8859316-2	chr19	8859216	8859416	+	580.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8548.0	NM_001013019	68852.0	Mm.265792	NM_001013019	ENSMUSG00000071656	Lrrn4cl	1110067I12Rik	LRRN4 C-terminal like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-29483133-2	chr19	29483033	29483233	+	563.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38854.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100478118-1	chr11	100478018	100478218	+	565.0	f0_balb.idr	TTS (NR_130343)	TTS (NR_130343)	362.0	NR_130343	102465671.0		NR_130343	ENSMUSG00000104854	Mir7116	mmu-mir-7116	microRNA 7116	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-23754475-4	chr11	23754375	23754575	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009044, intron 3 of 9)	intron (NM_009044, intron 3 of 9)	16495.0	NM_009044	19696.0	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21470623-2	chr9	21470523	21470723	+	775.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357721, intron 4 of 19)	intron (NM_001357721, intron 4 of 19)	25941.0	NR_029585	387194.0		NR_029585	ENSMUSG00000065547	Mir199a-1	Mirn199|Mirn199a-1|mir-199a-1	microRNA 199a-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-38497761-4	chr2	38497655	38497855	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13942.0	NM_021606	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-133444934-4	chr2	133444830	133445030	+	951.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-107229.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-80417235-2	chr11	80417131	80417331	+	731.916687	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6C|LTR|ERVK	-11384.0	NM_178616	69077.0	Mm.260539	NM_178616	ENSMUSG00000017428	Psmd11	1700089D09Rik|1810019E17Rik|2610024G20Rik|2810055C24Rik|C78232|P44.5|S9	proteasome (prosome, macropain) 26S subunit, non-ATPase, 11	protein-coding	0.335242331265292	0.360848193471613	0.352528489084681	0.804958749231148	0.336859809630941	1.14109999637687	0.712422576056906	1.02954438095573	2.17351629295728	0.242927984558121	1
Merged-chr3-52029348-3	chr3	52029259	52029459	+	782.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	75647.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167333694-3	chr2	167333627	167333827	+	826.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019835, intron 1 of 8)	intron (NM_019835, intron 1 of 8)	15451.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-4611267-2	chr2	4611167	4611367	+	897.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001347086, exon 25 of 25)	3' UTR (NM_001347086, exon 25 of 25)	40868.0	NM_026045	67229.0	Mm.38529	NM_026045	ENSMUSG00000039449	Prpf18	2810441A10Rik	pre-mRNA processing factor 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-72408620-3	chr12	72408531	72408731	+	893.400024	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_153457, exon 1 of 9)	5' UTR (NM_153457, exon 1 of 9)	423.0	NM_001286448	104001.0	Mm.221275	NM_153457	ENSMUSG00000021087	Rtn1	Nsp	reticulon 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88716864-4	chr3	88716746	88716946	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009069)	promoter-TSS (NM_009069)	-8.0	NM_001163310	19769.0	Mm.4009	NM_009069	ENSMUSG00000028057	Rit1	RIBB|ROC1|Rit	Ras-like without CAAX 1	protein-coding	3.96133616302393	2.71959907111273	3.24784563215963	3.81240270586296	2.56150394910868	3.57534827700193	2.93391117077475	4.08505184431212	-0.16697522913032	0.790064529316249	0.998431161219273
Merged-chr8-61575321-4	chr8	61575247	61575447	+	758.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293772, intron 10 of 21)	intron (NM_001293772, intron 10 of 21)	15822.0	NM_001293774	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	0.18895576259978	0.301773773848687	-0.0962073756915248	-0.101220530041353	-0.108360113771367	-0.0883085854206207	0.923499465640602	-0.100342449829801	1.12998453629764	0.613020722027944	1
Merged-chr11-73047792-4	chr11	73047693	73047893	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025818)	promoter-TSS (NM_025818)	-74.0	NM_025818	66874.0	Mm.41903	NM_025818	ENSMUSG00000020783	Ncbp3	1200014J11Rik|C130061O14Rik|C78393	nuclear cap binding subunit 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-31119222-4	chr2	31119138	31119338	+	980.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355105, intron 1 of 15)	intron (NM_001355105, intron 1 of 15)	-22738.0	NM_001177650	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-53088116-2	chr8	53088016	53088216	+	585.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	-423586.0	NM_001205054	11593.0	Mm.334535	NM_001005847	ENSMUSG00000031521	Aga	AW060726	aspartylglucosaminidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27314523-2	chr2	27314423	27314623	+	590.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_133905, intron 3 of 29)	intron (NR_133905, intron 3 of 29)	-67220.0	NM_138665	192166.0	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-8725130-2	chr10	8725035	8725235	+	720.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_175155, exon 20 of 20)	3' UTR (NM_175155, exon 20 of 20)	160935.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0.232360380664742	-0.33097840122848	-0.335617706544277	-0.339202362348293	-0.344276170361864	-0.329933677067434	-0.334593816574332	0.407312287758859	0.526566728551958	0.841852595799548	1
Merged-chr17-34840708-2	chr17	34840608	34840808	+	739.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_021337, exon 24 of 28)	exon (NM_021337, exon 24 of 28)	1163.0	NR_105937	102466777.0		NR_105937	ENSMUSG00000098458	Mir6971	Gm27307|mmu-mir-6971	microRNA 6971	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-144331163-7	chr2	144331014	144331214	+	701.6394650000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_152947, exon 2 of 4)	exon (NM_152947, exon 2 of 4)	248.0	NM_152947	107586.0	Mm.252750	NM_026924	ENSMUSG00000037279	Ovol2	1700108N11Rik|1810007D21Rik|M-OVO|M-OVO-A|M-OVO-B|MOVO|Ovo2|Zfp339|movo2	ovo like zinc finger 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91382574-4	chr16	91382496	91382696	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347258, intron 1 of 7)	MTEa-int|LTR|ERVL-MaLR	9813.0	NM_001110498	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-77688962-4	chr9	77688863	77689063	+	995.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52231.0	NM_172925	244923.0	Mm.138238	NM_172925	ENSMUSG00000044938	Klhl31	9830147P19Rik|D930047P17Rik|Kbtbd1	kelch-like 31	protein-coding	4.91079292860531	4.37928383704033	4.8461760047261	4.35102910538743	5.21040590079201	4.85281278210719	4.88010170448105	4.57198979568646	0.306317589987983	0.386390900849643	0.876334568009738
Merged-chr11-121686480-2	chr11	121686380	121686580	+	945.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13329.0	NM_178664	210004.0	Mm.386847	NM_178664	ENSMUSG00000046605	B3gntl1	6030413G23Rik	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-15205768-2	chr14	15205632	15205832	+	705.5	f0_c57.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-231891.0	NR_152122	77981.0	Mm.138039	NM_001033183		B230110C06Rik	-	RIKEN cDNA B230110C06 gene	ncRNA	1.95760381389107	1.03089912840232	1.73080823423561	0.744349336368549	2.04089984616802	0.780713246224867	0.762694357404885	0.972962008315865	-0.561649249896635	0.698509047768622	0.998284579433352
Merged-chr4-109406545-8	chr4	109406470	109406670	+	957.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153392)	promoter-TSS (NM_153392)	-313.0	NR_131195	102635290.0	Mm.427859	NR_131195		Ttc39aos1	Gm12750|lincRNA-EPS	Ttc39a opposite strand RNA 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-49006116-2	chr7	49006016	49006216	+	875.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111016, intron 2 of 38)	intron (NM_001111016, intron 2 of 38)	47043.0	NM_001111016	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-83486579-4	chr4	83486496	83486696	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290527)	promoter-TSS (NM_001290527)	-133.0	NM_001347143	101739.0	Mm.105331	NM_133948	ENSMUSG00000028484	Psip1	AA408851|AU015605|Dfs70|Ledgfa|Ledgfb|Psip2	PC4 and SFRS1 interacting protein 1	protein-coding	5.96623151588124	6.40335389974048	5.88137589685212	5.67606616724879	5.97298176077392	6.36807400742384	6.08811398631935	5.7467826720377	0.0596508156986781	0.809762640189453	0.998431161219273
Merged-chr19-55208030-2	chr19	55207930	55208130	+	599.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081076, intron 15 of 20)	intron (NM_001081076, intron 15 of 20)	15352.0	NR_106146	102465990.0		NR_106146	ENSMUSG00000098289	Mir6715	Gm27474|mmu-mir-6715	microRNA 6715	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36264404-4	chr1	36264322	36264522	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_153408)	TTS (NM_153408)	9003.0	NM_153408	214854.0	Mm.389110	NM_153408	ENSMUSG00000047180	Neurl3	2010300P06Rik|Lincr	neuralized E3 ubiquitin protein ligase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-31297814-4	chr17	31297695	31297895	+	826.549988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001242427, intron 1 of 19)	intron (NM_001242427, intron 1 of 19)	1571.0	NM_001242427	224674.0	Mm.311395	NM_153062	ENSMUSG00000024036	Slc37a1	G3PP	solute carrier family 37 (glycerol-3-phosphate transporter), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-76314202-2	chr16	76314102	76314302	+	652.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358238, intron 3 of 3)	intron (NM_001358238, intron 3 of 3)	58847.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-99461280-3	chr10	99461192	99461392	+	972.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-147879.0	NR_038019	100504202.0	Mm.403801	NR_038019	ENSMUSG00000111962	Gm20110	-	predicted gene, 20110	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116010456-2	chr11	116010356	116010556	+	566.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016905, intron 3 of 7)	intron (NM_016905, intron 3 of 7)	2263.0	NM_016905	14635.0	Mm.2820	NM_016905	ENSMUSG00000020766	Galk1	AA409894|GALK|Gk|Glk|Glk1	galactokinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-49165925-1	chr15	49165825	49166025	+	555.0	f1_balb.idr	Intergenic	Lx8|LINE|L1	-373936.0	NM_001081391	239420.0	Mm.309363	NM_001081391	ENSMUSG00000022311	Csmd3	4930500N14Rik|mKIAA1894	CUB and Sushi multiple domains 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45131205-2	chr7	45131105	45131305	+	741.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_013520)	TTS (NM_013520)	-2460.0	NM_009438	22121.0	Mm.180458	NM_009438	ENSMUSG00000074129	Rpl13a	1810026N22Rik|Tstap198-7|tum-antigen	ribosomal protein L13A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-118588246-4	chr10	118588159	118588359	+	986.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31734.0	NR_104123	103214.0	Mm.30529	NR_104123	ENSMUSG00000112230	Ifngas1	AI447422|Tmevpg1	Ifng antisense RNA 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-24272363-2	chr19	24272263	24272463	+	635.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_008044, exon 3 of 5)	exon (NM_008044, exon 3 of 5)	8223.0	NM_008044	14297.0	Mm.7319	NM_008044	ENSMUSG00000059363	Fxn	FA|FARR|Frda|X25	frataxin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-62421279-3	chr9	62421178	62421378	+	742.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_175484, exon 12 of 12)	3' UTR (NM_175484, exon 12 of 12)	79935.0	NM_009672	11737.0	Mm.269088	NM_009672	ENSMUSG00000032249	Anp32a	Anp32|I1PP2A|LANP|PHAP1|W91701|pp32	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-8147789-4	chr17	8147671	8147871	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001083938)	promoter-TSS (NM_001083938)	17.0	NM_001083938	100037283.0	Mm.426736	NM_001083938	ENSMUSG00000095687	Rnaset2a	0610007O07Rik|4833423A10Rik|4930532K22Rik|C79750|RNASE6PL|Rnaset2	ribonuclease T2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-137676273-3	chr4	137676195	137676395	+	801.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_138591, intron 1 of 23)	intron (NR_138591, intron 1 of 23)	-5332.0	NM_001081155	110351.0	Mm.180763	NM_029563	ENSMUSG00000041351	Rap1gap	1300019I11Rik|2310004O14Rik|AI427470|ARPP-90|Gap|Rap1GAP1|Rap1ga1	Rap1 GTPase-activating protein	protein-coding	0.375916897490983	0.118839152378004	0.800904028353126	0.107581046158343	0.252720187546614	0.120267057972354	0.81369924272727	0.108439967302977	-0.141696540420118	0.944054136150387	1
Merged-chr16-13668139-4	chr16	13668060	13668260	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028761)	promoter-TSS (NM_028761)	10.0	NM_001358452	74108.0	Mm.182350	NM_028761	ENSMUSG00000022685	Parn	1200003I18Rik|DAN	poly(A)-specific ribonuclease (deadenylation nuclease)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-44628858-2	chr10	44628758	44628958	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-170110.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-84267916-4	chr17	84267799	84267999	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183021, intron 30 of 37)	L1M3|LINE|L1	-79952.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-45623141-2	chr17	45623041	45623241	+	548.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21039.0	NM_001177469	653016.0	Mm.45676	NM_001177468	ENSMUSG00000079471	Mymx	EG653016|Esgp|Gm7325|minion|myomerger	myomixer, myoblast fusion factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-98713073-1	chr5	98712973	98713173	+	584.0	f0_balb.idr	intron (NM_001024614, intron 3 of 5)	intron (NM_001024614, intron 3 of 5)	-141342.0	NM_173404	110075.0	Mm.136461	NM_173404	ENSMUSG00000029335	Bmp3	9530029I04Rik	bone morphogenetic protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-134092643-4	chr4	134092530	134092730	+	957.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001162970)	TTS (NM_001162970)	2443.0	NM_013706	23833.0	Mm.24130	NM_013706	ENSMUSG00000000682	Cd52	AI463198|B7|B7-Ag|CAMPATH-1|CLS1|MB7	CD52 antigen	protein-coding	2.97374737524808	3.63904679151878	2.4177903208462	2.80484553209908	3.18140987008731	4.79320308164782	3.26977701591933	3.782429588207	1.3447618185693	0.0320005745003794	0.24802512458369
Merged-chr7-28434012-2	chr7	28433912	28434112	+	656.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_175021, intron 1 of 12)	intron (NM_175021, intron 1 of 12)	2179.0	NM_175021	233033.0	Mm.54120	NM_175021	ENSMUSG00000109336	Samd4b	BC042901	sterile alpha motif domain containing 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-155082780-2	chr1	155082680	155082880	+	650.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_151545, exon 1 of 7)	non-coding (NR_151545, exon 1 of 7)	484.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-102616432-3	chr9	102616336	102616536	+	883.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081122, intron 5 of 16)	intron (NM_001081122, intron 5 of 16)	9688.0	NM_001301689	28135.0	Mm.38910	NM_001081122	ENSMUSG00000032534	Cep63	4921501M07|AL450317.13gm1|AW107703|CD20R|D9Mgc41|D9Mgc48e|ET2	centrosomal protein 63	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105287019-2	chr8	105286919	105287119	+	815.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166394, intron 1 of 6)	L2b|LINE|L2	2509.0	NM_001166394	74356.0	Mm.204876	NM_028888	ENSMUSG00000014837	4931428F04Rik	AI426165|Kiaa0895l	RIKEN cDNA 4931428F04 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-137863122-3	chr4	137863008	137863208	+	882.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199307, intron 1 of 19)	intron (NM_199307, intron 1 of 19)	871.0	NM_199307	230857.0	Mm.401062	NM_199307	ENSMUSG00000057530	Ece1	AW322500|ECE-1|ECE-1a|ECE-1b|ECE-1d	endothelin converting enzyme 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-33127972-2	chr12	33127872	33128072	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_015602, intron 4 of 5)	L1MC1|LINE|L1	19614.0	NR_015602	320046.0	Mm.208337	NR_015602	ENSMUSG00000052125	F730043M19Rik	-	RIKEN cDNA F730043M19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52584117-2	chr13	52584017	52584217	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001198977, intron 1 of 13)	intron (NM_001198977, intron 1 of 13)	680.0	NM_001198977	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-56486678-4	chr14	56486580	56486780	+	825.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033043, intron 24 of 36)	intron (NM_001033043, intron 24 of 36)	83983.0	NM_001033043	30054.0	Mm.287783	NM_001033043	ENSMUSG00000000365	Rnf17	MMIP-2|Mmip2|TDRD4	ring finger protein 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19300717-4	chr7	19300565	19300765	+	946.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9380.0	NM_008036	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-89456229-2	chr1	89456129	89456329	+	872.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037136, intron 1 of 16)	intron (NM_001037136, intron 1 of 16)	1418.0	NM_001037136	347722.0	Mm.291135	NM_178119	ENSMUSG00000055013	Agap1	Centg2|Ggap1|R75364|mKIAA1099	ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125001787-2	chr6	125001687	125001887	+	955.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145926, intron 5 of 5)	intron (NM_001145926, intron 5 of 5)	3177.0	NM_001145926	319352.0	Mm.295327	NM_175696	ENSMUSG00000030329	Pianp	AI255183|AU067746|C530028O21Rik|Panp	PILR alpha associated neural protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-119080733-2	chr10	119080633	119080833	+	812.416687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12172.0	NR_045348	73400.0	Mm.416864	NR_045348	ENSMUSG00000100681	1700064J06Rik	-	RIKEN cDNA 1700064J06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-57398552-4	chr14	57398447	57398647	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030004)	promoter-TSS (NM_030004)	-64.0	NM_030004	68631.0	Mm.25539	NM_030004	ENSMUSG00000021947	Cryl1	1110025H08Rik|A230106J09Rik|C85932|gul3dh	crystallin, lambda 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-84087734-3	chr18	84087621	84087821	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146090)	promoter-TSS (NM_146090)	-437.0	NM_146090	225791.0	Mm.147052	NM_146090	ENSMUSG00000049090	Zadh2	C530046K17Rik|PTGR-3|Pthr3	zinc binding alcohol dehydrogenase, domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117870799-4	chr11	117870708	117870908	+	879.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027919, intron 3 of 6)	intron (NM_027919, intron 3 of 6)	2718.0	NM_027919	71776.0	Mm.3200	NM_027919	ENSMUSG00000017713	Tha1	1300017K07Rik|GLY1	threonine aldolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-94370244-2	chr11	94370144	94370344	+	908.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029600, intron 8 of 30)	intron (NM_029600, intron 8 of 30)	22732.0	NM_029600	76408.0	Mm.23942	NM_029600	ENSMUSG00000020865	Abcc3	1700019L09Rik|ABC31|MLP2|MOAT-D|MRP3	ATP-binding cassette, sub-family C (CFTR/MRP), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-138843966-2	chr1	138843866	138844066	+	682.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010714, intron 2 of 6)	GA-rich|Low_complexity|Low_complexity	-1522.0	NM_001025565	16876.0	Mm.250732	NM_010714	ENSMUSG00000019230	Lhx9	3110009O07Rik|BB104635|LH2B	LIM homeobox protein 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-92641950-4	chr1	92641854	92642054	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028108)	promoter-TSS (NR_028108)	-6.0	NR_028108	66915.0	Mm.30179	NM_001163425	ENSMUSG00000073616	Cops9	1110002M09Rik|Myeov2	COP9 signalosome subunit 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-173753593-2	chr1	173753481	173753681	+	629.25	f0_balb.idr|f0_c57.idr	intron (NM_008329, intron 5 of 8)	intron (NM_008329, intron 5 of 8)	-11772.0	NM_001204910	226691.0	Mm.440876	NM_001204910	ENSMUSG00000073490	Ifi207	AI607873|Pyhin-A|pyhinA	interferon activated gene 207	protein-coding	0.898608791004617	1.2772981578231	1.23157187758171	1.55622166662139	0.903414863952568	0.789451019799537	1.24176456474239	1.07646979362338	-1.2294937702831	0.366432928650725	0.861488362759908
Merged-chr7-80806529-2	chr7	80806429	80806629	+	840.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3198.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-63985319-4	chr9	63985210	63985410	+	956.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008542, intron 3 of 3)	intron (NM_008542, intron 3 of 3)	36749.0	NM_008542	17130.0	Mm.325757	NM_008542	ENSMUSG00000036867	Smad6	Madh6|b2b390Clo	SMAD family member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70693391-1	chr8	70693291	70693491	+	855.3333130000001	f1_balb.idr	Intergenic	PB1D7|SINE|Alu	-4348.0	NM_010592	16478.0	Mm.419851	NM_010592	ENSMUSG00000071076	Jund	Jund1	jun D proto-oncogene	protein-coding	0.956860091303467	1.39858781315381	0.81149257308638	1.16364314285919	1.641391627313	1.78020269625143	1.48952699465132	0.802158295682774	1.49824008448195	0.267389668366052	0.770194930470086
Merged-chr1-166125097-1	chr1	166124997	166125197	+	654.0	f0_balb.idr	intron (NM_001033344, intron 2 of 5)	intron (NM_001033344, intron 2 of 5)	2801.0	NM_001033344	240892.0	Mm.35315	NM_001033344	ENSMUSG00000026564	Dusp27	C130085G02Rik|Gm209	dual specificity phosphatase 27 (putative)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-121472619-1	chr10	121472519	121472719	+	668.0	f0_balb.idr	intron (NM_138956, intron 1 of 4)	ID_B1|SINE|B4	3631.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-9546305-6	chr1	9546196	9546396	+	967.422241	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_021511, exon 1 of 1)	exon (NM_021511, exon 1 of 1)	888.0	NM_021511	59014.0	Mm.29061	NM_021511	ENSMUSG00000061024	Rrs1	5730466A07Rik|AA415037|D1Ertd701e|Rrr	ribosome biogenesis regulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-109958857-2	chr7	109958757	109958957	+	784.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021494, intron 1 of 22)	intron (NM_021494, intron 1 of 22)	1565.0	NM_021494	19347.0	Mm.21904	NM_021494	ENSMUSG00000035901	Dennd5a	1500012B19Rik|AJ245569|AW496491|ORF37|Rab6ip1|mKIAA1091	DENN/MADD domain containing 5A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-91368958-2	chr1	91368858	91369058	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173395, intron 2 of 7)	intron (NM_173395, intron 2 of 7)	2528.0	NM_173395	227358.0	Mm.389157	NM_173395	ENSMUSG00000047443	Erfe	4832406C22|Fam132b|myonectin	erythroferrone	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-121018423-4	chr4	121018335	121018535	+	936.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1188.0	NM_133716	69780.0	Mm.271819	NM_133716	ENSMUSG00000032870	Smap2	1810031K02Rik|AA408614|Smap1l	small ArfGAP 2	protein-coding	3.83596620507053	3.95387058556988	2.37037766171358	4.19159133361578	4.02204222603403	4.2492052308757	4.43037957014662	3.6617511335461	0.51175041988891	0.332400906731818	0.833345452772687
Merged-chr1-54826073-3	chr1	54825972	54826172	+	854.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081433, intron 2 of 27)	intron (NM_001081433, intron 2 of 27)	100315.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-59953062-4	chr1	59952963	59953163	+	738.545837	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037725, intron 3 of 7)	intron (NM_001037725, intron 3 of 7)	40057.0	NM_001037725	72750.0	Mm.258250	NM_001037725	ENSMUSG00000041040	Fam117b	2810425F24Rik|6330416D14Rik|Als2cr13	family with sequence similarity 117, member B	protein-coding	2.50147700725168	2.56120343111606	2.34107476514871	2.97984652590824	2.41971399152502	2.08830018121406	3.08571413131238	2.83411694509105	0.0964126207059876	0.89817743567841	0.998431161219273
Merged-chr16-90299627-2	chr16	90299527	90299727	+	881.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-15124.0	NM_178923	224432.0	Mm.439811	NM_178923	ENSMUSG00000022983	Scaf4	AA517739|Sfrs15|Sra4|Srsf15	SR-related CTD-associated factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165853748-1	chr2	165853648	165853848	+	708.0	f1_c57bl6.idr	intron (NM_001252587, intron 2 of 11)	(CAGAGA)n|Simple_repeat|Simple_repeat	4425.0	NM_001252585	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	-2.18308165884198	-2.15547475440471	-2.16382331017202	-2.1706810624505	-2.18114370519566	-2.15366558754311	-2.03057248461154	-2.16945352807143	0.759018020146679	0.829933115115583	1
Merged-chr14-75032380-4	chr14	75032277	75032477	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_198642, exon 2 of 14)	exon (NM_198642, exon 2 of 14)	16350.0	NM_198642	271221.0	Mm.320280	NM_198642	ENSMUSG00000034959	Rubcnl	5031414D18Rik|Gm744|Gm911|Kiaa0226l	RUN and cysteine rich domain containing beclin 1 interacting protein like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171974094-2	chr1	171973995	171974195	+	714.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	53200.0	NM_033509	93840.0	Mm.36148	NM_033509	ENSMUSG00000026556	Vangl2	C530001F03Rik|Lootl|Lp|Lpp1|Ltap|Vang1l2|loop-tail|ska17|ska<m17Jus>|stbm|strabismus	VANGL planar cell polarity 2	protein-coding	1.50441077573529	0.864667247184208	1.5051332297574	1.0729502140017	1.85717749685085	0.870261009718072	1.1163208358131	2.88197442751043	1.87992007576699	0.13218139649372	0.56910731882715
Merged-chr12-77833626-3	chr12	77833525	77833725	+	852.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-393030.0	NM_172952	268566.0	Mm.341742	NM_145965	ENSMUSG00000047454	Gphn	5730552E08Rik|AI662856|BC027112|C230040D23|GPH|GPHRYN|geph	gephyrin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126881967-4	chr8	126881877	126882077	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32957.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-50924868-4	chr14	50924774	50924974	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133676)	promoter-TSS (NM_133676)	19.0	NM_133676	66246.0	Mm.274791	NM_133676	ENSMUSG00000006289	Osgep	1500019L24Rik|GCPL-1|PRSMG1	O-sialoglycoprotein endopeptidase	protein-coding	4.33869250978436	4.62775718728823	4.06226900034337	4.63996807534057	5.03859732305925	4.60598267031544	4.35133564821472	4.61947116361071	0.313770823513693	0.406094722163527	0.89095290927429
Merged-chr14-19416170-4	chr14	19416066	19416266	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GSAT_MM|Satellite|Satellite	186421.0	NM_001024706	432825.0	Mm.327147	NM_001024706	ENSMUSG00000095024	Gm5458	EG432825	predicted gene 5458	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-67463867-4	chr7	67463754	67463954	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-90996.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	4.24484108426406	4.57063667751139	4.20708492252803	4.77425888958718	4.87265749704492	3.94452437462983	4.04260304970792	3.69186219285967	-0.306125999899722	0.482644890848416	0.930327710476536
Merged-chr11-21157711-2	chr11	21157611	21157811	+	716.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58842.0	NR_151470	108167888.0		NR_151470		2610024D14Rik	-	ATP synthase subunit g, mitochondrial pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-50889661-3	chr17	50889563	50889763	+	646.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028162, intron 13 of 21)	intron (NM_028162, intron 13 of 21)	190982.0	NM_001297747	12228.0	Mm.392910	NM_009770	ENSMUSG00000022863	Btg3	ANA|tob5	B cell translocation gene 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102431710-4	chr12	102431606	102431806	+	918.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011175, intron 1 of 13)	L1Md_F2|LINE|L1	8107.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-41628260-5	chr4	41628142	41628342	+	972.0285640000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175138, intron 13 of 19)	(CA)n|Simple_repeat|Simple_repeat	12060.0	NM_027147	69638.0	Mm.372459	NM_027147	ENSMUSG00000028445	Enho	1110065P19Rik|2310040A07Rik	energy homeostasis associated	protein-coding	2.78169414404589	2.92680055111678	2.36371911425673	2.84330378579811	2.63771661808306	2.29887020212263	2.22590024909794	3.09076136969665	-0.252256533099107	0.731818369332951	0.998431161219273
Merged-chr17-8800116-2	chr17	8800016	8800216	+	885.400024	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290707, intron 2 of 22)	intron (NM_001290707, intron 2 of 22)	-1629.0	NM_011866	23984.0	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-42244721-4	chr10	42244618	42244818	+	929.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019740, intron 2 of 3)	intron (NM_019740, intron 2 of 3)	32024.0	NM_019740	56484.0	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-79254201-4	chr11	79254058	79254258	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019653, intron 1 of 8)	CpG	537.0	NM_019653	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-120887665-2	chr5	120887565	120887765	+	929.1666869999999	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011852)	promoter-TSS (NM_011852)	-52.0	NR_126529	23960.0	Mm.389688	NM_011852	ENSMUSG00000066861	Oas1g	AI449562|L2|Mmu-L|Mmu-L2|Oas1b|Oias-1|Oias1	2'-5' oligoadenylate synthetase 1G	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-31564054-4	chr15	31563994	31564194	+	998.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4739.0	NM_181588	69574.0	Mm.28108	NM_181588	ENSMUSG00000022235	Cmbl	2310016A09Rik	carboxymethylenebutenolidase-like (Pseudomonas)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24165724-2	chr17	24165620	24165820	+	803.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361533, intron 1 of 2)	intron (NM_001361533, intron 1 of 2)	-1987.0	NM_172935	245847.0	Mm.87319	NM_172935	ENSMUSG00000036820	Amdhd2	5730457F11Rik	amidohydrolase domain containing 2	protein-coding	0.636736026085981	0.675539431222851	0.143826641632054	0.138324666679377	1.04600714614232	0.152508973170677	0.145394349507215	0.139287901031931	0.153436543298515	0.942020019118669	1
Merged-chr11-70790720-2	chr11	70790620	70790820	+	609.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001045526)	TTS (NM_001045526)	21841.0	NM_001045526	327957.0	Mm.164325	NM_001045526	ENSMUSG00000057135	Scimp	A430084P05Rik	SLP adaptor and CSK interacting membrane protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-52990940-2	chr2	52990840	52991040	+	703.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	MTC|LTR|ERVL-MaLR	133072.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-189054394-2	chr1	189054294	189054494	+	673.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-46554.0	NR_153196	226823.0	Mm.209880	NM_172650	ENSMUSG00000026608	Kctd3	4930438A20Rik|9330185B06|E330032J19Rik|NY-REN-45	potassium channel tetramerisation domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47184335-4	chr17	47184197	47184397	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001097623, intron 3 of 19)	intron (NM_001097623, intron 3 of 19)	43355.0	NM_001097623	224829.0	Mm.260989	NM_172622		Trerf1	9430096I18Rik|AI429294|B830015H24|RAPA|Trep-132|Trep132	transcriptional regulating factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125383302-2	chr6	125383202	125383402	+	794.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2c|LINE|L2	-2798.0	NM_198604	213522.0	Mm.333396	NM_198604	ENSMUSG00000038167	Plekhg6	BC026778|Gm155	pleckstrin homology domain containing, family G (with RhoGef domain) member 6	protein-coding	0.427893614706207	0.333094499574564	0.422254662279593	0.276835619347443	-0.0102602754261125	0.00386531328522111	-0.000756824230633807	-0.00468159027007464	-3.83397205081614	0.065763199895765	1
Merged-chr16-56029378-3	chr16	56029275	56029475	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356449, intron 1 of 5)	CpG	342.0	NM_001356449	76302.0	Mm.310642	NM_001024622	ENSMUSG00000071533	Pcnp	1110018D06Rik|AI647035	PEST proteolytic signal containing nuclear protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94596765-2	chr10	94596665	94596865	+	621.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10566.0	NR_106070	102466817.0		NR_106070	ENSMUSG00000098544	Mir7211	Gm27536|mmu-mir-7211	microRNA 7211	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-29348042-4	chr6	29347942	29348142	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_184053)	promoter-TSS (NM_184053)	-64.0	NM_001285412	12321.0	Mm.392075	NM_007594	ENSMUSG00000029767	Calu	9530075H20Rik	calumenin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-84771426-1	chr3	84771326	84771526	+	1000.0	f1_c57bl6.idr	Intergenic	Intergenic	-44151.0	NM_001177773	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	0.45631040173279	0.817894331858441	0.203874433596306	0.199118617910681	0.671206579563328	0.708197006403395	0.205234007433861	0.199949444673141	0.145737319398284	0.941089003711767	1
Merged-chr11-22629950-2	chr11	22629850	22630050	+	571.0	f0_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	117667.0	NM_153596	103765.0	Mm.221274	NM_153596	ENSMUSG00000049904	Tmem17	AI503894|AW049890	transmembrane protein 17	protein-coding	-0.459677444553275	-0.446895206558723	0.014040815358871	-0.454310707840495	0.281464868703392	-0.445952232332286	-0.450156868247634	-0.453746212004697	0.887766535221161	0.745446812450168	1
Merged-chr4-140962453-2	chr4	140962353	140962553	+	691.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355515, intron 1 of 7)	B3|SINE|B2	1182.0	NM_023374	67680.0	Mm.246965	NM_023374	ENSMUSG00000009863	Sdhb	0710008N11Rik	succinate dehydrogenase complex, subunit B, iron sulfur (Ip)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-77198513-2	chr12	77198413	77198613	+	754.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39591.0	NM_001252614	53618.0	Mm.35628	NM_016893	ENSMUSG00000021065	Fut8	-	fucosyltransferase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126908945-4	chr8	126908815	126909015	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37006.0	NM_024214	67952.0	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-74454497-3	chr17	74454407	74454607	+	958.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033367, intron 1 of 8)	RLTR26B_MM|LTR|ERVK	4601.0	NM_001033367	268973.0	Mm.311884	NM_001033367	ENSMUSG00000039193	Nlrc4	9530011P19Rik|CLAN|CLAN1|CLANA|CLANB|CLANC|CLAND|Card12|IPAF	NLR family, CARD domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111041358-4	chr12	111041239	111041439	+	977.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198023, intron 2 of 11)	intron (NM_198023, intron 2 of 11)	1541.0	NM_198023	217864.0	Mm.23808	NM_198023	ENSMUSG00000037896	Rcor1	5730409O11|6720480E22Rik|AU042633|D12Wsu95e|Rocr1|mKIAA0071	REST corepressor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-78713260-3	chr1	78713166	78713366	+	685.133362	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	54826.0	NM_001136226	195434.0	Mm.276016	NM_001001981	ENSMUSG00000079470	Utp14b	4932411L21Rik|jsd	UTP14B small subunit processome component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-16080531-4	chr4	16080515	16080715	+	790.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4|SINE|ID	-66727.0	NM_145950	209212.0	Mm.46455	NM_145950	ENSMUSG00000041153	Osgin2	BC010311|C230027H09Rik	oxidative stress induced growth inhibitor family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-63405143-2	chr4	63405043	63405243	+	584.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1698.0	NM_001045514	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-12272999-2	chr12	12272899	12273099	+	998.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001146119, intron 1 of 11)	intron (NM_001146119, intron 1 of 11)	10860.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-105557687-4	chr4	105557608	105557808	+	995.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F-int|LTR|ERVL-MaLR	400361.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	1.87657253671091	2.83609046375166	2.55004552234874	2.66287182297882	2.15658489378148	1.43058004575831	2.84654891026385	2.13473036693018	-0.606964420821098	0.494136132270262	0.935679785535167
Merged-chr2-166153405-2	chr2	166153305	166153505	+	894.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355619, intron 1 of 21)	intron (NM_001355619, intron 1 of 21)	1880.0	NM_001355619	72043.0	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-125227422-4	chr8	125227399	125227599	+	876.830322	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_174854, intron 10 of 12)	intron (NM_174854, intron 10 of 12)	173304.0	NM_174854	244667.0	Mm.233504	NM_170596	ENSMUSG00000043051	Disc1	-	disrupted in schizophrenia 1	protein-coding	3.02570324297253	1.52735898159974	2.31511797114899	3.04926886752885	2.84745343165903	3.18804171478042	2.33353626271937	2.2606721137492	0.164139729340236	0.842769598911194	0.998431161219273
Merged-chr13-107095664-2	chr13	107095564	107095764	+	712.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	73094.0	NR_015471	100040322.0	Mm.133867	NR_015471	ENSMUSG00000071181	3830408C21Rik	-	RIKEN cDNA 3830408C21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115104701-2	chr11	115104601	115104801	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163753, intron 1 of 8)	B2_Mm2|SINE|B2	13270.0	NM_001163753	58222.0	Mm.143789	NM_021411	ENSMUSG00000020732	Rab37	B230331O03Rik|B230354I04Rik	RAB37, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-154749015-2	chr4	154748917	154749117	+	743.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-81150.0	NM_028513	73353.0	Mm.30958	NM_028513	ENSMUSG00000051276	Actrt2	1700052K15Rik|Arp-T2|Arpm2	actin-related protein T2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-56714314-2	chr6	56714214	56714414	+	907.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030235)	promoter-TSS (NM_030235)	-591.0	NM_030235	78937.0	Mm.105343	NM_030235	ENSMUSG00000029787	Avl9	5830411G16Rik|D730049P16Rik|mKIAA0241	AVL9 cell migration associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-93697867-4	chr14	93697791	93697991	+	842.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081377, intron 2 of 4)	intron (NM_001081377, intron 2 of 4)	192778.0	NM_001271800	211712.0	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding	1.99374466098642	2.6965830188464	2.33126647869646	2.10494385149836	3.49490137481632	3.04490749013282	1.99502368860493	3.23343967655679	1.47264998246973	0.0561593822767208	0.349602353107625
Merged-chr12-76766530-2	chr12	76766430	76766630	+	692.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_154884, intron 1 of 2)	intron (NR_154884, intron 1 of 2)	992.0	NM_206534	211151.0	Mm.80970	NM_206534	ENSMUSG00000090258	Churc1	1700030P15Rik|My015|chch	churchill domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78272876-2	chr15	78272776	78272976	+	809.916626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	11973.0	NR_106137	102465776.0		NR_106137	ENSMUSG00000098996	Mir7676-1	Gm27600|mmu-mir-7676-1	microRNA 7676-1	ncRNA	-0.294083384950798	-0.277963382818132	0.430175288204581	-0.287290034214969	-0.293070061983337	-0.276782190008417	0.44311158986884	-0.286577643912737	0.0410571026119648	0.987250810110592	1
Merged-chr17-74296677-2	chr17	74296577	74296777	+	821.6999509999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-1814.0	NM_133771	76890.0	Mm.311874	NM_133771	ENSMUSG00000058704	Memo1	0610016J10Rik|D930048L02Rik	mediator of cell motility 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-49215683-2	chr6	49215583	49215783	+	583.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023670)	promoter-TSS (NM_023670)	-729.0	NM_023670	140488.0	Mm.281018	NM_023670	ENSMUSG00000029814	Igf2bp3	2610101N11Rik|AA522010|AL022933|AU045931|IMP-3|IMP3|Koc13|Neilsen|mimp3	insulin-like growth factor 2 mRNA binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-41887936-2	chr5	41887827	41888027	+	624.0	f0_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3415.0	NR_105842	102465225.0		NR_105842	ENSMUSG00000098264	Mir6414	Gm27518|mmu-mir-6414	microRNA 6414	ncRNA	3.12525341506014	2.51573592522293	3.54311948343017	4.05276884720433	3.60823750805413	3.00337608167329	3.13215436310816	3.0344974712735	-0.338038559202551	0.585988854971038	0.967449368090758
Merged-chr14-47542639-4	chr14	47542535	47542735	+	910.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172599, exon 10 of 10)	3' UTR (NM_172599, exon 10 of 10)	25799.0	NM_172599	100504663.0	Mm.287279	NM_172599	ENSMUSG00000037526	Atg14	4832427M01|Atg14L|D14Ertd114e|D14Ertd436e	autophagy related 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83740314-2	chr11	83740214	83740414	+	587.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-6626.0	NM_183249	66107.0	Mm.902	NM_183249	ENSMUSG00000051748	Wfdc21	1100001G20Rik|Wdnm1-like	WAP four-disulfide core domain 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115567809-1	chr5	115567709	115567909	+	639.0	f1_c57bl6.idr	intron (NM_172719, intron 1 of 57)	intron (NM_172719, intron 1 of 57)	2546.0	NM_172719	231659.0	Mm.153014	NM_172719	ENSMUSG00000041638	Gcn1l1	4932409G22|AL022764|G431004K08Rik|GCN1L|Gcn1|mKIAA0219	GCN1 general control of amino-acid synthesis 1-like 1 (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-95700514-3	chr9	95700419	95700619	+	976.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A3|LTR|ERVL-MaLR	49839.0	NM_001311123	22063.0	Mm.149633	NM_011643	ENSMUSG00000032839	Trpc1	Mtrp1|Trp1|Trrp1	transient receptor potential cation channel, subfamily C, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-34866441-4	chr6	34866345	34866545	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197986, intron 1 of 1)	intron (NM_197986, intron 1 of 1)	3299.0	NM_197986	68487.0	Mm.248440	NM_197986	ENSMUSG00000057137	Tmem140	1110007F12Rik	transmembrane protein 140	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-27451459-4	chr7	27451366	27451566	+	967.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290525)	promoter-TSS (NM_001290525)	-952.0	NM_001290525	233016.0	Mm.24021	NM_144923	ENSMUSG00000040466	Blvrb	-	biliverdin reductase B (flavin reductase (NADPH))	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-149274779-8	chr5	149274687	149274887	+	965.2708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001308462, intron 2 of 3)	MT2B|LTR|ERVL	9783.0	NM_009663	11690.0	Mm.19844	NM_009663	ENSMUSG00000060063	Alox5ap	Flap	arachidonate 5-lipoxygenase activating protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-63824242-3	chr7	63824136	63824336	+	769.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR10_RN|LTR|ERVK	-92621.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-149172493-2	chr4	149172393	149172593	+	830.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5788.0	NM_001081274	110208.0	Mm.252080	NM_025801	ENSMUSG00000028961	Pgd	0610042A05Rik|AU019875|C78335	phosphogluconate dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107614003-2	chr9	107613903	107614103	+	829.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_008138)	TTS (NM_008138)	-4762.0	NM_001291539	20347.0	Mm.4083	NM_009153	ENSMUSG00000057969	Sema3b	SemA|Semaa|sema5|semaV	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B	protein-coding	0.973808372974432	1.78563891143938	0.534042828619106	1.17111868427519	1.2073728992565	0.549581022303639	0.536867961956951	0.525813099306087	-1.95548802255201	0.23696107410748	0.733808141787246
Merged-chr18-20887068-3	chr18	20886990	20887190	+	846.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177038, intron 1 of 28)	RSINE1|SINE|B4	8988.0	NM_029491	75964.0	Mm.273769	NM_029491	ENSMUSG00000033382	Trappc8	5033403J15Rik|AI845423|D030074E01Rik|Trs85|mKIAA1012	trafficking protein particle complex 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-85703523-1	chr1	85703423	85703623	+	1000.0	f0_c57.idr	intron (NM_013673, intron 17 of 19)	RLTR53B_Mm|LTR|ERVK	33083.0	NM_177055	319997.0	Mm.116691	NM_177055	ENSMUSG00000052760	A630001G21Rik	-	RIKEN cDNA A630001G21 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-111227498-4	chr11	111227378	111227578	+	959.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	161314.0	NM_008425	16518.0	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-12389254-3	chr2	12389143	12389343	+	667.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355539, intron 1 of 6)	intron (NM_001355539, intron 1 of 6)	30217.0	NM_001355537	66960.0	Mm.34059	NM_024185	ENSMUSG00000026767	Mindy3	1810041E18Rik|2310047O13Rik|5830410F13Rik|AI447827|AW111958|Fam188a	MINDY lysine 48 deubiquitinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-113736469-4	chr5	113736372	113736572	+	803.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001010825, intron 1 of 2)	intron (NM_001010825, intron 1 of 2)	690.0	NM_001010825	231630.0	Mm.21926	NM_001010825	ENSMUSG00000053334	Ficd	D5Ertd40e|Hype	FIC domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-91506837-3	chr7	91506751	91506951	+	909.2666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011807, intron 2 of 22)	intron (NM_011807, intron 2 of 22)	416065.0	NM_011807	23859.0	Mm.147213	NM_011807	ENSMUSG00000052572	Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|Gm21505|PSD93	discs large MAGUK scaffold protein 2	protein-coding	0.968495416967386	1.11574797859809	1.3799823641062	1.33150789461098	3.2180574512076	1.93567364203567	3.58813324608704	2.67424068485464	4.80947817395756	8.8257399076613e-05	0.00283131624096578
Merged-chr15-75695887-4	chr15	75695791	75695991	+	928.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8397.0	NM_001163465	14787.0	Mm.57052	NM_008164	ENSMUSG00000022580	Rhpn1	BB023497|Grbp|Rhophilin|mKIAA1929	rhophilin, Rho GTPase binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-56485292-3	chr6	56485187	56485387	+	758.700012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-115653.0	NM_001159955	18575.0	Mm.5145	NM_011054	ENSMUSG00000004347	Pde1c	-	phosphodiesterase 1C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-78912512-4	chr7	78912420	78912620	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291220)	promoter-TSS (NM_001291220)	-904.0	NM_001291221	57444.0	Mm.322843	NM_020583	ENSMUSG00000039236	Isg20	1600023I01Rik|2010107M23Rik|20kDa|DnaQL|HEM45	interferon-stimulated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-41165716-2	chr4	41165616	41165816	+	831.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026275, intron 1 of 4)	RLTR16|LTR|ERVK	29695.0	NM_026275	67615.0	Mm.389540	NM_026275	ENSMUSG00000036241	Ube2r2	1200003M11Rik|Cdc34b|Ubc3b	ubiquitin-conjugating enzyme E2R 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-99666161-4	chr6	99666083	99666283	+	907.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025829, intron 1 of 6)	L2a|LINE|L2	588.0	NM_025829	66892.0	Mm.32889	NM_025829	ENSMUSG00000093661	Eif4e3	1300018P11Rik|AI451927|eIF4E-3	eukaryotic translation initiation factor 4E member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-116675018-4	chr6	116674905	116675105	+	733.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1169.0	NM_178045	213391.0	Mm.257931	NM_178045	ENSMUSG00000042129	Rassf4	3830411C14Rik|AD037|AI586137	Ras association (RalGDS/AF-6) domain family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24549013-7	chr17	24548897	24549097	+	915.4761960000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013630)	promoter-TSS (NM_013630)	-953.0	NM_013630	18763.0	Mm.30435	NM_013630	ENSMUSG00000032855	Pkd1	PC1|mFLJ00285	polycystin 1, transient receptor poteintial channel interacting	protein-coding	1.29776747314779	0.407002635636748	0.398135530600852	0.971682396960518	1.09214566373382	0.408990344537668	0.400098277992651	0.576178506941789	-0.873256939787977	0.630661986544559	1
Merged-chr7-19791475-2	chr7	19791375	19791575	+	556.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161844, intron 4 of 10)	ID_B1|SINE|B4	5334.0	NM_001161844	80794.0	Mm.81698	NM_023224	ENSMUSG00000040525	Cblc	2310076I21Rik|2310079L19Rik|Cbl3	Casitas B-lineage lymphoma c	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-157014279-4	chr1	157014297	157014497	+	897.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74771.0	NM_001357391	78255.0	Mm.28376	NM_023884	ENSMUSG00000026594	Ralgps2	1810020P17Rik|2210408F11Rik|4921528G01Rik|9130014M22Rik|AU043409|AW046161	Ral GEF with PH domain and SH3 binding motif 2	protein-coding	1.62478543502102	1.41844337037768	1.76970590823538	1.33868252364957	1.13497353574611	1.4283152544468	2.07177599246233	1.17705209298531	-0.0898340552270737	0.937806446542852	0.998431161219273
Merged-chr19-44360292-4	chr19	44360164	44360364	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	26938.0	NM_183216	329065.0	Mm.313583	NM_183216	ENSMUSG00000050195	Scd4	ACOD4	stearoyl-coenzyme A desaturase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-116992749-4	chr8	116992615	116992815	+	945.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026572, intron 1 of 4)	intron (NM_026572, intron 1 of 4)	734.0	NM_026572	68133.0	Mm.258462	NM_026572	ENSMUSG00000034424	Gcsh	1100001L02Rik|5730591C18Rik	glycine cleavage system protein H (aminomethyl carrier)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-24107225-1	chr10	24107125	24107325	+	553.0	f1_balb.idr	Intergenic	RMER20C_Mm|LTR|ERVK	2309.0	NM_001010831	503558.0	Mm.300923	NM_001010831	ENSMUSG00000037424	Taar9	Gm231|taR-9	trace amine-associated receptor 9	protein-coding	-1.18419808084042	-1.15875600318036	-1.1698249344665	-1.17891728419305	-1.18371096125734	-0.658810792906392	-1.16731917104739	-1.00793516783984	2.66388005619903	0.409452855569996	1
Merged-chr5-25663881-2	chr5	25663781	25663981	+	720.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	41916.0	NM_020570	57434.0	Mm.143767	NM_020570	ENSMUSG00000028933	Xrcc2	4921524O04Rik|8030409M04Rik|RAD51|RecA	X-ray repair complementing defective repair in Chinese hamster cells 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-31418227-4	chr15	31418155	31418355	+	965.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35434.0	NM_145852	252967.0	Mm.436668	NM_145852	ENSMUSG00000022236	Ropn1l	ASP|AV047578|Akapasp	ropporin 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70581000-1	chr14	70580900	70581100	+	750.0	f1_balb.idr	3' UTR (NM_001360475, exon 3 of 3)	3' UTR (NM_001360475, exon 3 of 3)	2901.0	NM_001360474	213484.0	Mm.34191	NM_153136	ENSMUSG00000045211	Nudt18	BC036718	nudix (nucleoside diphosphate linked moiety X)-type motif 18	protein-coding	-1.56355737717652	-1.81244775989375	-1.82128546162293	-1.82854501295842	-1.83962066705452	-1.81053259306168	-1.81928479966835	-1.82724555674025	-1.28500227969968	0.715751224811686	1
Merged-chr11-5103448-2	chr11	5103348	5103548	+	661.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177370, intron 5 of 8)	intron (NM_177370, intron 5 of 8)	3283.0	NM_001290493	279766.0	Mm.260866	NM_177370	ENSMUSG00000034175	Rhbdd3	Ptag	rhomboid domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-59949405-2	chr10	59949305	59949505	+	724.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_029083)	TTS (NM_029083)	2365.0	NM_029083	74747.0	Mm.21697	NM_029083	ENSMUSG00000020108	Ddit4	5830413E08Rik|AA415483|REDD1|Rtp801|dig2	DNA-damage-inducible transcript 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-41130768-4	chr9	41130673	41130873	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176860, intron 1 of 13)	intron (NM_176860, intron 1 of 13)	27289.0	NM_176860	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	4.765120363356	4.86191518557388	5.26741347157312	4.92516518423723	5.81366570944051	6.12615832973277	5.57097624572375	5.31471663977387	0.886408378592643	0.00300256058224345	0.0454093132761642
Merged-chr17-35918628-3	chr17	35918535	35918735	+	873.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357740)	promoter-TSS (NM_001357740)	-637.0	NM_001357740	52040.0	Mm.29385	NM_175934	ENSMUSG00000039220	Ppp1r10	2610025H06Rik|Cat53|D17Ertd808e|Fb19|Pnuts	protein phosphatase 1, regulatory subunit 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-61029653-2	chr11	61029553	61029753	+	826.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001267593, intron 1 of 1)	intron (NM_001267593, intron 1 of 1)	7089.0	NM_001267593	16515.0	Mm.4970	NM_010603	ENSMUSG00000042529	Kcnj12	IRK-2|IRK2|Kir2.2|MB-IRK2	potassium inwardly-rectifying channel, subfamily J, member 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70560914-2	chr8	70560814	70561014	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007924, intron 1 of 11)	intron (NM_007924, intron 1 of 11)	21239.0	NM_007924	13716.0	Mm.271973	NM_007924	ENSMUSG00000070002	Ell	Ell1|Men	elongation factor RNA polymerase II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-30849336-2	chr5	30849236	30849436	+	704.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_133350, intron 1 of 6)	intron (NM_133350, intron 1 of 6)	-12471.0	NM_001310516	100732.0	Mm.332295	NM_133350	ENSMUSG00000029166	Mapre3	AI790651|EB2|EB3|EBF3|RP3	microtubule-associated protein, RP/EB family, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-10879704-4	chr16	10879594	10879794	+	925.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35103.0	NR_131135	545180.0	Mm.373756	NR_131135	ENSMUSG00000095369	Gm21859	-	predicted gene, 21859	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167922964-2	chr2	167922864	167923064	+	766.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-9363.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107581216-4	chr9	107581116	107581316	+	896.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178020)	promoter-TSS (NM_178020)	-80.0	NM_178020	109685.0	Mm.447916	NM_178020	ENSMUSG00000036091	Hyal3	Hyl3	hyaluronoglucosaminidase 3	protein-coding	2.4672964703557	3.40847947033275	2.78779831371244	2.34221524601145	2.69012502837335	2.9047377050157	3.09555002774966	2.35420702588998	-0.0602864405007043	0.933080492854818	0.998431161219273
Merged-chr10-117831854-2	chr10	117831754	117831954	+	796.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_024457, intron 1 of 7)	intron (NM_024457, intron 1 of 7)	14120.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123058594-2	chr5	123058494	123058694	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-11578.0	NM_001347456	74890.0	Mm.141383	NM_029112	ENSMUSG00000029477	Morn3	4930438O03Rik	MORN repeat containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-22070151-2	chr9	22070051	22070251	+	777.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040406)	promoter-TSS (NR_040406)	-851.0	NR_040406	100503652.0	Mm.439941	NR_040406	ENSMUSG00000096981	Gm16845	-	predicted gene, 16845	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-24141700-2	chr11	24141600	24141800	+	847.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016707, intron 2 of 4)	intron (NM_016707, intron 2 of 4)	61005.0	NM_001159290	14025.0	Mm.53687	NM_016707	ENSMUSG00000000861	Bcl11a	2810047E18Rik|BCL-11A|Ctip1|D930021L15Rik|Evi9|Evi9a|Evi9b|Evi9c|mKIAA1809	B cell CLL/lymphoma 11A (zinc finger protein)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-80220604-3	chr18	80220504	80220704	+	879.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025299, intron 3 of 3)	MLT1C-int|LTR|ERVL-MaLR	13737.0	NM_001042408	27366.0	Mm.172411	NM_025299	ENSMUSG00000057130	Txnl4a	D18Wsu98e|Dim1|Txnl4|U5-15kD|U5-15kDa	thioredoxin-like 4A	protein-coding	0.135071022147655	0.155774990021688	0.149025493457005	0.143796375890934	0.291223408687893	0.534211235773774	0.955548685611713	0.708495296432005	4.22901429454752	0.0297606955605083	1
Merged-chr2-180250441-2	chr2	180250341	180250541	+	755.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6938.0	NM_025587	66481.0	Mm.289669	NM_025587	ENSMUSG00000039001	Rps21	1810049N11Rik|2410030A14Rik	ribosomal protein S21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-22857690-4	chr16	22857600	22857800	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026400)	promoter-TSS (NM_026400)	-31.0	NM_001316746	70573.0	Mm.68291	NM_001081368	ENSMUSG00000004462	Tbccd1	5730478M09Rik|AU015083|BB165076	TBCC domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-118110222-4	chr10	118110137	118110337	+	951.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31550.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75976878-3	chr11	75976775	75976975	+	681.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23037.0	NM_198637	74230.0	Mm.271247	NM_198637	ENSMUSG00000053783	1700016K19Rik	Liat1	RIKEN cDNA 1700016K19 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107287041-1	chr9	107286941	107287141	+	1000.0	f1_balb.idr	intron (NM_001316691, intron 1 of 7)	intron (NM_001316691, intron 1 of 7)	2355.0	NM_001316691	102626.0	Mm.222612	NM_178907	ENSMUSG00000032577	Mapkapk3	3PK|AI874665|MAPKAP-K3|MAPKAP3|MK-3|MK3|MapkKapk3	mitogen-activated protein kinase-activated protein kinase 3	protein-coding	0.0684063894678574	0.273543155294138	0.0795220796812479	0.0753389703042803	0.0694367439783534	0.5753771814766	0.533220115417108	0.602640616046474	3.16659127187861	0.127208695689672	1
Merged-chr10-8834097-4	chr10	8834035	8834235	+	997.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 2 of 19)	intron (NM_175155, intron 2 of 19)	51935.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	2.87007424705441	2.28479555419798	3.43979593994396	2.6662974611426	2.8933926799914	2.10895206671184	2.38574661584283	2.67993405872141	-0.64366633586722	0.388113110561122	0.877827277965127
Merged-chr16-75436183-2	chr16	75436083	75436283	+	587.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	149878.0	NM_001252513	320355.0	Mm.99517	NM_177142	ENSMUSG00000032948	Lipi	D930038D03Rik|lpd1	lipase, member I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-63439375-4	chr14	63439390	63439590	+	877.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177628, intron 1 of 3)	intron (NM_177628, intron 1 of 3)	3096.0	NM_177628	219148.0	Mm.37882	NM_177628	ENSMUSG00000035095	Fam167a	A030013D21	family with sequence similarity 167, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-57606265-2	chr9	57606165	57606365	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146223)	promoter-TSS (NM_146223)	16.0	NM_146223	235415.0	Mm.35242	NM_146223	ENSMUSG00000039714	Cplx3	BC016632|CpxIII|ERGIC-53L|ERGL|Lamn1l|Lman1l	complexin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27102871-2	chr17	27102771	27102971	+	620.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_080553, exon 25 of 58)	exon (NM_080553, exon 25 of 58)	11626.0	NR_106142	102465779.0		NR_106142	ENSMUSG00000098826	Mir7677	Gm27400|mmu-mir-7677	microRNA 7677	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-11351863-3	chr18	11351773	11351973	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-281403.0	NM_001252495	225182.0	Mm.154275	NM_175458	ENSMUSG00000041238	Rbbp8	9930104E21Rik|CtIP|RBBP-8|RIM|SAE2	retinoblastoma binding protein 8, endonuclease	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-99983873-4	chr5	99983768	99983968	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4930.0	NM_001077267	11991.0	Mm.150231	NM_007516	ENSMUSG00000000568	Hnrnpd	Auf1|Hnrpd	heterogeneous nuclear ribonucleoprotein D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67223027-4	chr10	67222929	67223129	+	932.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207221, intron 8 of 25)	intron (NM_207221, intron 8 of 25)	37279.0	NM_001242396	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-9801843-4	chr3	9801750	9801950	+	995.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195031, intron 1 of 8)	intron (NM_001195031, intron 1 of 8)	31829.0	NM_053182	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-53863688-4	chr10	53863598	53863798	+	964.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-112789.0	NM_001081428	75906.0	Mm.436785	NM_001081428	ENSMUSG00000019856	Fam184a	3110012E06Rik|4930438C08Rik|4930589M24Rik	family with sequence similarity 184, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-51150297-4	chr2	51150132	51150332	+	910.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1121.0	NM_028810	74194.0	Mm.46497	NM_028810	ENSMUSG00000017144	Rnd3	2610017M01Rik|AI661404|Arhe|Rhoe	Rho family GTPase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-4884069-1	chr2	4883969	4884169	+	551.0	f1_c57bl6.idr	intron (NM_175400, intron 1 of 8)	intron (NM_175400, intron 1 of 8)	2505.0	NM_175400	109079.0	Mm.34329	NM_175400	ENSMUSG00000026662	Sephs1	1110046B24Rik|AA589574|AI505014|AW111620|SELD|SPS|SPS1	selenophosphate synthetase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-59235029-3	chr3	59234938	59235138	+	765.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177855, intron 18 of 43)	intron (NM_177855, intron 18 of 43)	-24156.0	NM_028808	74191.0	Mm.90067	NM_028808	ENSMUSG00000036362	P2ry13	2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174	purinergic receptor P2Y, G-protein coupled 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-120287917-2	chr10	120287817	120288017	+	873.3333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60857.0	NM_025431	66225.0	Mm.291755	NM_025431	ENSMUSG00000020224	Llph	1190005P17Rik	LLP homolog, long-term synaptic facilitation (Aplysia)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-84199107-4	chr1	84199006	84199206	+	994.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003948, intron 1 of 2)	intron (NM_001003948, intron 1 of 2)	19855.0	NR_105771	102465181.0		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-54843661-2	chr14	54843561	54843761	+	607.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16829.0	NM_183174	239099.0	Mm.280994	NM_183174	ENSMUSG00000057156	Homez	mKIAA1443	homeodomain leucine zipper-encoding gene	protein-coding	-0.734697168562934	-1.28094420828655	-1.29131886204401	-1.29984091153697	-1.31008363841169	-1.2786959775384	-1.28897026783925	-1.29831546875223	-2.42902550944018	0.482518537989684	1
Merged-chr17-26940671-2	chr17	26940571	26940771	+	557.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001281491)	promoter-TSS (NM_001281491)	-781.0	NM_001281491	240057.0	Mm.328888	NM_001281491	ENSMUSG00000067629	Syngap1	Gm1963|Syngap	synaptic Ras GTPase activating protein 1 homolog (rat)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10219391-2	chr19	10219291	10219491	+	769.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033481, intron 10 of 25)	intron (NM_001033481, intron 10 of 25)	13358.0	NM_001163431	69038.0	Mm.375100	NM_026919	ENSMUSG00000036372	Tmem258	1810006K21Rik	transmembrane protein 258	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-33824544-4	chr17	33824421	33824621	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_103515)	promoter-TSS (NR_103515)	41.0	NM_016844	54127.0	Mm.352374	NM_016844	ENSMUSG00000067288	Rps28	-	ribosomal protein S28	protein-coding	5.03719989953097	5.01742093277192	5.88116388839661	5.63860379985919	5.77512414918664	4.90914639971204	5.63745631334861	5.56791155106113	0.0831146250351336	0.79031822135046	0.998431161219273
Merged-chr13-30642332-4	chr13	30642263	30642463	+	735.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC3|LINE|L1	-17696.0	NM_001037955	105352.0	Mm.289646	NM_134068	ENSMUSG00000069255	Dusp22	JKAP|JSP1|LMW-DSP2|MKPX	dual specificity phosphatase 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80265911-2	chr10	80265811	80266011	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133188, intron 1 of 11)	intron (NM_133188, intron 1 of 11)	920.0	NM_133188	70248.0	Mm.148693	NM_133188	ENSMUSG00000069565	Dazap1	2410042M16Rik|mPrrp	DAZ associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-80146087-4	chr11	80145999	80146199	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3946.0	NM_183275	68550.0	Mm.18466	NM_183275	ENSMUSG00000046909	Tefm	1110002N22Rik	transcription elongation factor, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-145030844-4	chr7	145030744	145030944	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-90919.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-67306373-6	chr13	67306242	67306442	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001003666)	promoter-TSS (NM_001003666)	70.0	NM_001003666	431706.0	Mm.439456	NM_001003666	ENSMUSG00000055341	Zfp457	Rslcan-6	zinc finger protein 457	protein-coding	2.76875630235673	3.79717615219472	3.27361782311915	2.91869704937713	2.96955978975411	2.76515858815268	2.52644969217312	2.93370497256549	-0.764984886153767	0.239084512795167	0.735635286471347
Merged-chr4-126058503-4	chr4	126058408	126058608	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356446)	promoter-TSS (NM_001356446)	-57.0	NM_001356446	230751.0	Mm.38907	NM_172701	ENSMUSG00000042616	Oscp1	1810007P19Rik|5730415O04|6030436A01Rik	organic solute carrier partner 1	protein-coding	1.84962779105758	1.63873994853539	2.30150718274754	2.05285484686126	1.86471461841693	1.64963016544368	2.0206793434387	1.16512906888557	-0.777852129526423	0.455412583483103	0.919253057979521
Merged-chr12-3921294-1	chr12	3921194	3921394	+	1000.0	f1_balb.idr	Intergenic	Intergenic	29550.0	NM_153743	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-7625386-3	chr18	7625343	7625543	+	881.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081287, intron 1 of 16)	intron (NM_001081287, intron 1 of 16)	1420.0	NM_001081287	75739.0	Mm.133293	NM_001081287	ENSMUSG00000057440	Mpp7	1110068J02Rik|2810038M04Rik|5430426E14Rik|AI415104|Gm955	membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-43925576-2	chr14	43925476	43925676	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPEY4_I-int|LTR|ERVK	-2208.0	NM_053112	93725.0	Mm.429087	NM_053112	ENSMUSG00000090166	Ear10	Raf2	eosinophil-associated, ribonuclease A family, member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53043985-2	chr4	53043885	53044085	+	882.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 40 of 49)	intron (NM_013454, intron 40 of 49)	32105.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-113874044-2	chr13	113873944	113874144	+	817.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172595, intron 1 of 4)	intron (NM_172595, intron 1 of 4)	79536.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-93823001-1	chr11	93822901	93823101	+	581.0	f1_balb.idr	Intergenic	Intergenic	62765.0	NM_001013375	217109.0	Mm.379350	NM_001013375	ENSMUSG00000054079	Utp18	6230425C22Rik|6430513M13|Wdr50	UTP18 small subunit processome component	protein-coding	0.191797790563103	0.401357454026584	-0.0273619884205308	-0.0301918395351207	0.088720177608192	0.146305058717112	-0.0265481274824277	0.34076119135543	-0.0383314009824477	0.985073421707238	1
Merged-chr8-83699206-4	chr8	83699087	83699287	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177262)	promoter-TSS (NM_177262)	-8.0	NM_177262	320795.0	Mm.213000	NM_177262	ENSMUSG00000057672	Pkn1	DBK|F730027O18Rik|PAK1|PRK1|Pkn|Prkcl1|Stk3	protein kinase N1	protein-coding	2.2629746867212	0.849219686565066	1.4516003833857	0.81069399356155	1.87294594091687	0.853945546730746	0.832582944728994	2.15116708133593	0.180036285374682	0.901056467889243	0.998431161219273
Merged-chr18-88971692-4	chr18	88971595	88971795	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175542)	promoter-TSS (NM_175542)	-95.0	NM_175542	246102.0	Mm.772	NM_175542	ENSMUSG00000023066	Rttn	4921538A15Rik|AI666264|C530033I08Rik|D230040K24	rotatin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-73536674-2	chr7	73536574	73536774	+	565.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081345, intron 2 of 38)	intron (NM_001081345, intron 2 of 38)	5072.0	NM_001081345	244059.0	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-39772803-2	chr15	39772703	39772903	+	825.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_022722, intron 9 of 9)	RMER13B|LTR|ERVK	-24242.0	NR_045788	100503072.0	Mm.446661	NR_045788	ENSMUSG00000087695	Gm16291	-	predicted gene 16291	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-45563836-4	chr17	45563721	45563921	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357105)	promoter-TSS (NM_001357105)	-115.0	NM_001357105	73836.0	Mm.289716	NM_028662	ENSMUSG00000037089	Slc35b2	1110003M08Rik|AA407792|AI842275|PAPST1|Slc35b1	solute carrier family 35, member B2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-121369257-2	chr14	121369070	121369270	+	714.5	f0_balb.idr|f1_balb.idr	intron (NM_145465, intron 1 of 10)	intron (NM_145465, intron 1 of 10)	10060.0	NM_145465	223255.0	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	1.81564461408266	0.960164582945462	2.07962411895724	0.925660017170054	1.40757598476482	0.964431936559792	2.00677916423894	1.73450977561978	0.0854339233574031	0.948301882810984	0.998431161219273
Merged-chr10-15154986-3	chr10	15154885	15155085	+	984.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	394696.0	NM_008703	18101.0	Mm.487342	NM_008703	ENSMUSG00000019865	Nmbr	BB182387	neuromedin B receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45341517-4	chr7	45341405	45341605	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029741, intron 25 of 29)	intron (NM_029741, intron 25 of 29)	6236.0	NM_010473	15464.0	Mm.39968	NM_010473	ENSMUSG00000038239	Hrc	-	histidine rich calcium binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131983140-4	chr1	131983052	131983252	+	722.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_145977)	TTS (NM_145977)	12543.0	NM_145977	212980.0	Mm.200307	NM_145977	ENSMUSG00000026435	Slc45a3	2210413P12Rik|AU023994|AU043764|IPCA-6|PRST|Pcanap6	solute carrier family 45, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-83581089-1	chr7	83580989	83581189	+	779.5	f0_c57.idr	Intergenic	Intergenic	-3842.0	NM_177695	233424.0	Mm.486619	NM_177695	ENSMUSG00000038540	Tmc3	9030203A06	transmembrane channel-like gene family 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3768869-4	chr19	3768781	3768981	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167889, intron 2 of 10)	CpG-7172	1460.0	NM_001167885	225888.0	Mm.278578	NM_144871	ENSMUSG00000045098	Kmt5b	AA117471|C630029K18Rik|Suv4-20h1|Suv420h1	lysine methyltransferase 5B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-88035203-3	chr4	88035117	88035317	+	940.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1810.0	NM_027326	70122.0	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-31543582-3	chr9	31543466	31543666	+	925.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-79328.0	NM_144936	235135.0	Mm.390134	NM_144936	ENSMUSG00000041737	Tmem45b	BC018222	transmembrane protein 45b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117299748-2	chr8	117299648	117299848	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	42729.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-54443362-2	chr14	54443262	54443462	+	694.166626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_008608)	TTS (NM_008608)	11764.0	NM_008608	17387.0	Mm.280175	NM_008608	ENSMUSG00000000957	Mmp14	AI325305|MMP-X1|MT-MMP-1|MT1-MMP|sabe	matrix metallopeptidase 14 (membrane-inserted)	protein-coding	1.65796637393689	0.853041852822984	1.50790352462514	1.4602417174719	1.27399134531328	0.856336853800368	1.92247136085263	0.828732020478834	-0.302577050089249	0.828709696399534	0.998431161219273
Merged-chr11-93967467-2	chr11	93967367	93967567	+	770.6999509999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_008704, intron 1 of 4)	intron (NM_008704, intron 1 of 4)	1054.0	NM_008704	18102.0	Mm.439702	NM_008704	ENSMUSG00000037601	Nme1	AL024257|NDPK-A|NM23-M1|NM23A	NME/NM23 nucleoside diphosphate kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167941650-2	chr2	167941550	167941750	+	686.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_011201, intron 1 of 8)	B3A|SINE|B2	9323.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-59440163-4	chr4	59440043	59440243	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1510.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	3.77755296670058	3.36896619135209	2.79558221661913	3.69193304097225	3.34754756932208	3.48835600400963	3.37515605773456	3.18192573323449	-0.191628442741192	0.732554035357967	0.998431161219273
Merged-chr6-99401445-3	chr6	99401344	99401544	+	980.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053202, intron 1 of 18)	intron (NM_053202, intron 1 of 18)	33901.0	NM_053202	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-40797256-4	chr9	40797242	40797442	+	869.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TTC)n|Simple_repeat|Simple_repeat	-3931.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-96404507-1	chr11	96404407	96404607	+	925.0	f0_balb.idr	Intergenic	Intergenic	38749.0	NM_008266	15407.0	Mm.890	NM_008266	ENSMUSG00000018973	Hoxb1	Hox-2.9	homeobox B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-30610832-4	chr15	30610744	30610944	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355502, intron 3 of 21)	intron (NM_001355502, intron 3 of 21)	-428282.0	NR_045186	73784.0	Mm.66947	NR_045186	ENSMUSG00000115474	4930430F21Rik	-	RIKEN cDNA 4930430F21 gene	ncRNA	6.43307599840251	7.20628250889525	6.49762050376178	6.26527881449142	6.14402800816776	6.51295174216728	6.55106188641918	5.94951964891734	-0.362350771552741	0.137236042351256	0.577469500630244
Merged-chr2-130851671-1	chr2	130851571	130851771	+	698.0	f0_balb.idr	Intergenic	ID_B1|SINE|B4	-11526.0	NM_029432	228602.0	Mm.271990	NM_028367	ENSMUSG00000027309	4930402H24Rik	2810487F15Rik|AI413763|C78926	RIKEN cDNA 4930402H24 gene	protein-coding	0.472545726374324	0.522184316730273	0.506447137837873	0.493969768544233	1.67787220611248	0.525667844899954	1.87373887931164	1.33701197129484	5.04351579507679	0.00271253998157595	0.0422297422564208
Merged-chr6-33837033-4	chr6	33836915	33837115	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009148, intron 12 of 17)	intron (NM_009148, intron 12 of 17)	-192433.0	NM_028886	74354.0	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-115089141-2	chr13	115089041	115089241	+	675.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_134058, intron 1 of 1)	intron (NM_134058, intron 1 of 1)	1017.0	NM_134058	105083.0	Mm.486295	NM_134058	ENSMUSG00000042275	Pelo	AA409897|AI852218	pelota mRNA surveillance and ribosome rescue factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36346492-2	chr18	36346392	36346592	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2132.0	NM_001081365	66060.0	Mm.272527	NM_001081365	ENSMUSG00000046727	Cystm1	0610010O12Rik	cysteine-rich transmembrane module containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167931601-3	chr2	167931488	167931688	+	938.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011201)	promoter-TSS (NM_011201)	-739.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-55517394-2	chr3	55517294	55517494	+	855.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357475, intron 16 of 16)	intron (NM_001357475, intron 16 of 16)	55666.0	NM_001357476	13175.0	Mm.393242	NM_019978	ENSMUSG00000027797	Dclk1	1700113D08Rik|2810480F11Rik|AI836758|Click-I|Cpg16|Dcamkl1|Dcl|Dclk|mKIAA0369	doublecortin-like kinase 1	protein-coding	-1.53362919331644	-1.50201671710775	-1.51157659084044	-1.08120497225282	-1.53141005593807	-1.49994505258991	-1.50941244497383	-1.51802371459528	-1.94474658522739	0.577200604274218	1
Merged-chr17-29399380-4	chr17	29399284	29399484	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38470.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-31135643-3	chr3	31135457	31135657	+	716.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14363.0	NM_008770	18417.0	Mm.4425	NM_008770	ENSMUSG00000037625	Cldn11	Claudin-11|Claudin11|Osp|Otm	claudin 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-55468764-4	chr11	55468643	55468843	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1009.0	NM_013716	27041.0	Mm.39631	NM_013716	ENSMUSG00000018583	G3bp1	AI849976|B430204O07|C87777|G3bp|mKIAA4115	GTPase activating protein (SH3 domain) binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-108992531-2	chr9	108992431	108992631	+	812.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_153430, intron 1 of 13)	intron (NR_153430, intron 1 of 13)	629.0	NR_153430	270198.0	Mm.132391	NM_173019	ENSMUSG00000025648	Pfkfb4	C230090D14	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-84801783-4	chr12	84801635	84801835	+	847.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013589, intron 16 of 34)	intron (NM_013589, intron 16 of 34)	28465.0	NM_028863	74316.0	Mm.25719	NM_028863	ENSMUSG00000021241	Isca2	0710001C05Rik|5730594E03Rik|Hbld1	iron-sulfur cluster assembly 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171845639-4	chr1	171845528	171845728	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289470, intron 2 of 8)	intron (NM_001289470, intron 2 of 8)	5931.0	NM_013489	12523.0	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	2.16107174390745	3.05917360635046	2.82915956757349	2.29327946856749	3.86315767659784	3.79395333561983	3.79877228342109	3.35022599144282	1.81954443538806	0.00300729841416284	0.0454396676684524
Merged-chr7-72669291-1	chr7	72669191	72669391	+	696.0	f0_balb.idr	Intergenic	Intergenic	-362696.0	NM_001024703	244049.0	Mm.217412	NM_001024703	ENSMUSG00000032776	Mctp2	Gm489	multiple C2 domains, transmembrane 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-108591917-2	chr3	108591817	108592017	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001358055, exon 1 of 15)	5' UTR (NM_001358055, exon 1 of 15)	184.0	NM_001358055	99512.0	Mm.285968	NM_181400	ENSMUSG00000040389	Wdr47	1810073M12Rik|AA552998|mKIAA0893	WD repeat domain 47	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-148500344-3	chr4	148500263	148500463	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039554)	promoter-TSS (NM_001039554)	99.0	NM_001039554	654812.0	Mm.388929	NM_001039554	ENSMUSG00000028989	Angptl7	-	angiopoietin-like 7	protein-coding	1.19807711233947	1.37708648171005	3.30392789780908	1.87600274329483	1.77681005029478	1.06985010755649	3.22565415588277	1.28543729300893	-0.175156905447225	0.876150945489939	0.998431161219273
Merged-chr6-124921758-4	chr6	124921660	124921860	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152158, intron 1 of 1)	7SLRNA|srpRNA|srpRNA	-3814.0	NM_026988	69202.0	Mm.142187	NM_026988	ENSMUSG00000030122	Ptms	2610009E16Rik	parathymosin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-3125503-6	chr11	3125321	3125521	+	918.805542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_003517, intron 1 of 6)	B1_Mus1|SINE|Alu	1400.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-128488673-4	chr8	128488561	128488761	+	994.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358959, intron 12 of 16)	intron (NM_001358959, intron 12 of 16)	129420.0	NR_035436	100316680.0		NR_035436	ENSMUSG00000084523	Mir1903	Mirn1903|mmu-mir-1903	microRNA 1903	ncRNA	3.30757712298975	2.53768452533794	1.8607742840092	3.35309651329889	3.07497901828965	2.55708921323905	2.61669434979227	3.71247669826544	0.302275411205845	0.683124429063119	0.995882295196263
Merged-chr3-158031757-4	chr3	158031645	158031845	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001093753)	promoter-TSS (NM_001093753)	27.0	NM_001356997	69207.0	Mm.223946	NM_026989	ENSMUSG00000055436	Srsf11	0610009J05Rik|2610019N13Rik|BF642805|Sfrs11	serine/arginine-rich splicing factor 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-61368669-2	chr3	61368569	61368769	+	598.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_028712)	TTS (NM_028712)	4162.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-118366384-3	chr4	118366289	118366489	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198170, intron 65 of 71)	intron (NM_198170, intron 65 of 71)	6390.0	NR_003946	68180.0	Mm.193212	NM_026601	ENSMUSG00000006395	Hyi	2700033B16Rik|6430559E15Rik|HT036	hydroxypyruvate isomerase (putative)	protein-coding	3.69842519002549	3.05832892361703	1.70489814273257	2.975682376378	4.20931526488244	3.45027667293802	4.85107671100368	4.44331438573057	1.83321834979162	0.00237620411466853	0.0380806281849417
Merged-chr18-69198480-2	chr18	69198477	69198677	+	642.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-145915.0	NM_013685	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	-1.32440223303897	-1.29339468673833	-0.717877708899544	-1.31276353204239	-1.32392690786997	-1.29109028300231	-1.30162128075409	-1.31119997543009	-2.49510383040271	0.470258445164311	1
Merged-chr4-154025992-4	chr4	154025886	154026086	+	976.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163722)	promoter-TSS (NM_001163722)	58.0	NM_001163722	68859.0	Mm.477488	NM_001033144	ENSMUSG00000078350	Smim1	0610011H04Rik|1190007F08Rik|2700009I11Rik	small integral membrane protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166012466-4	chr2	166012343	166012543	+	925.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008679, intron 1 of 22)	intron (NM_008679, intron 1 of 22)	19806.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	2.25461692457261	0.998415602063022	0.976453753354173	1.6700223441713	1.98918438605426	1.00326750965934	1.42466044789234	2.26307023148283	0.446352117546842	0.729008376306133	0.998431161219273
Merged-chr7-28153081-2	chr7	28152981	28153181	+	728.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164655, intron 11 of 19)	intron (NM_001164655, intron 11 of 19)	-16667.0	NM_007991	14113.0	Mm.4595	NM_007991	ENSMUSG00000046865	Fbl	AL022665|FIB|FLRN|RNU3IP1	fibrillarin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-117149224-1	chr5	117149124	117149324	+	588.0	f0_balb.idr	intron (NM_001081308, intron 1 of 19)	intron (NM_001081308, intron 1 of 19)	15636.0	NM_183306	330177.0	Mm.24343	NM_183306	ENSMUSG00000061288	Taok3	2900006A08Rik|A130052D22|A430105I05Rik	TAO kinase 3	protein-coding	2.13335028405613	1.55433024498363	2.5468402741166	0.833109825991393	1.62768521420525	1.15777040910192	0.857044559804396	0.836421488837347	-2.29223129083722	0.0834758813628301	0.442508228832652
Merged-chr17-69348898-2	chr17	69348798	69348998	+	675.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	-34277.0	NM_001356283	22666.0	Mm.29434	NM_009547	ENSMUSG00000049672	Zbtb14	ZF5|Zfp161|b2b1982Clo	zinc finger and BTB domain containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128335759-3	chr10	128335661	128335861	+	857.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1966.0	NM_026444	12974.0	Mm.58836	NM_026444	ENSMUSG00000005683	Cs	2610511A05Rik|9030605P22Rik|Ahl4|BB234005|Cis	citrate synthase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-116527203-2	chr7	116527103	116527303	+	758.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360375, intron 7 of 14)	intron (NM_001360375, intron 7 of 14)	22834.0	NM_001360375	53322.0	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99265846-3	chr15	99265741	99265941	+	871.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13880.0	NM_016766	51812.0	Mm.383472	NM_016766	ENSMUSG00000037570	Mcrs1	C78274|ICP22BP|MSP58|P78	microspherule protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111599712-3	chr12	111599628	111599828	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021516, intron 2 of 16)	intron (NM_021516, intron 2 of 16)	25218.0	NM_022801	17169.0	Mm.260504	NM_021516	ENSMUSG00000007411	Mark3	1600015G02Rik|A430080F22Rik|C-TAK1|ETK-1|ETK1|Emk2|MPK10	MAP/microtubule affinity regulating kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-24393173-4	chr13	24392923	24393123	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001284519, intron 2 of 17)	intron (NM_001284519, intron 2 of 17)	-22099.0	NM_007717	12763.0	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-146616735-4	chr3	146616625	146616825	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009474, intron 4 of 7)	MLT1J1|LTR|ERVL-MaLR	-1127.0	NM_019957	56629.0	Mm.25853	NM_019957	ENSMUSG00000028185	Dnase2b	AI526873|Dlad|DnaseIIb	deoxyribonuclease II beta	protein-coding	6.22629069232228	6.36603513887296	5.70044036989216	5.14377223051387	6.48692050633323	6.76871411213186	6.5145170703469	6.18862216160845	0.615769089690832	0.0203616001881086	0.181499612969485
Merged-chr11-75581986-1	chr11	75581886	75582086	+	677.0	f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-6093.0	NM_008850	18738.0	Mm.3128	NM_008850	ENSMUSG00000017781	Pitpna	Pitpn|vb|vibrator	phosphatidylinositol transfer protein, alpha	protein-coding	0.175733831779997	1.22026527446593	0.194068299770785	1.00421441055608	0.350917811163571	0.204777049319546	0.406536933955395	0.188435497112438	-2.81921819141004	0.150762629400526	1
Merged-chr6-72380464-4	chr6	72380349	72380549	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080742)	promoter-TSS (NM_001080742)	19.0	NM_001080742	53620.0	Mm.440321	NM_016872	ENSMUSG00000073002	Vamp5	AF119384|Camp	vesicle-associated membrane protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-66994749-2	chr17	66994643	66994843	+	658.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 7 of 32)	intron (NM_001357625, intron 7 of 32)	31492.0	NR_049205	100885844.0		NR_049205	ENSMUSG00000093508	Mir5709	Gm22041|mir-5709|mmu-mir-5709	microRNA 5709	ncRNA	-0.371874139817479	-0.907497544543158	-0.91575832747622	-0.917883676395731	-0.653929632727339	-0.904885094889076	-0.915149760356743	-0.917512775697636	-1.10787147514619	0.724568129051228	1
Merged-chr3-144198704-4	chr3	144198608	144198808	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161769, intron 2 of 4)	CpG	3624.0	NM_001161770	16911.0	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-75820778-1	chr18	75820678	75820878	+	716.0	f1_c57bl6.idr	intron (NM_145356, intron 1 of 4)	GC_rich|Low_complexity|Low_complexity	600.0	NM_145356	207259.0	Mm.159332	NM_145356	ENSMUSG00000044646	Zbtb7c	B230208J24Rik|Kr-pok|Zbtb36	zinc finger and BTB domain containing 7C	protein-coding	2.29649585918529	3.00462426841945	1.2122388259184	3.02851496552946	2.3180621286312	3.32318341817331	1.22209668244979	1.18296986066803	-0.412308477575114	0.823914874772832	0.998431161219273
Merged-chr2-168561238-2	chr2	168561138	168561338	+	556.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037177, intron 3 of 6)	B4A|SINE|B4	29127.0	NM_001291178	18019.0	Mm.116802	NM_010899	ENSMUSG00000027544	Nfatc2	AI607462|NF-ATc2|NF-ATp|NFAT1|NFAT1-D|Nfatp	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-24674822-2	chr18	24674722	24674922	+	608.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026779, intron 6 of 14)	ID_B1|SINE|B4	21131.0	NM_026779	68591.0	Mm.28252	NM_026779	ENSMUSG00000039616	Mocos	1110018O12Rik|HMCS|MCS|MOS	molybdenum cofactor sulfurase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-85604568-4	chr3	85604462	85604662	+	866.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_144896, exon 4 of 13)	exon (NM_144896, exon 4 of 13)	30433.0	NM_144896	229487.0	Mm.52275	NM_144896	ENSMUSG00000028085	Gatb	9430026F02Rik|Pet112|Pet112l	glutamyl-tRNA(Gln) amidotransferase, subunit B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-59077484-2	chr19	59077384	59077584	+	632.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28|LTR|ERVL	-1415.0	NM_001114312	71653.0	Mm.37338	NM_175172	ENSMUSG00000041362	Shtn1	4930506M07Rik|Shootin1|mKIAA1598	shootin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-72412891-4	chr1	72412767	72412967	+	932.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	105446.0	NM_001357519	22596.0	Mm.246952	NM_009533	ENSMUSG00000026187	Xrcc5	AI314015|CTC85|CTCBF|Ku80|Ku86	X-ray repair complementing defective repair in Chinese hamster cells 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-25413650-4	chr15	25413532	25413732	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027376)	promoter-TSS (NR_027376)	132.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-9488224-2	chr18	9488124	9488324	+	806.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13B|LTR|ERVK	-38070.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-8537287-3	chr12	8537226	8537426	+	866.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001286385)	TTS (NM_001286385)	2240.0	NM_001038660	328059.0	Mm.46326	NM_177802	ENSMUSG00000020600	Slc7a15	Arpat	solute carrier family 7 (cationic amino acid transporter, y+ system), member 15	protein-coding	2.55643953767101	2.14373085506681	2.52650903382177	1.25863654231499	2.42813138052916	2.15985251047738	2.54685957213621	1.26317955987332	-0.0707762223792365	0.944922350893096	0.998431161219273
Merged-chr15-93270468-4	chr15	93270376	93270576	+	994.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346785, intron 1 of 7)	intron (NM_001346785, intron 1 of 7)	4703.0	NM_001357006	223827.0	Mm.22819	NM_001033275	ENSMUSG00000036197	Gxylt1	Glt8d3|Gm1228|Gm87	glucoside xylosyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64282318-2	chr5	64282232	64282432	+	707.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 10 of 18)	intron (NM_001289514, intron 10 of 18)	51975.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-59040678-3	chr4	59040636	59040836	+	973.095215	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025277, intron 2 of 2)	intron (NM_025277, intron 2 of 2)	5580.0	NM_025277	14700.0	Mm.41780	NM_025277	ENSMUSG00000038607	Gng10	AV006524	guanine nucleotide binding protein (G protein), gamma 10	protein-coding	0.97408614754055	1.06473140683025	1.97888153229213	1.01377538211335	2.28892778269396	2.31286567894871	2.6530094856505	1.64682331351273	2.67189084798167	0.0238404279146999	0.202194241838291
Merged-chr16-58501194-6	chr16	58501108	58501308	+	912.422241	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357433, intron 2 of 10)	L1_Mus4|LINE|L1	22218.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-20723414-4	chr10	20723343	20723543	+	906.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013875, intron 1 of 12)	intron (NM_013875, intron 1 of 12)	1635.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167940368-2	chr2	167940268	167940468	+	602.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011201, intron 1 of 8)	intron (NM_011201, intron 1 of 8)	8041.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-23419414-3	chr5	23419302	23419502	+	655.6190190000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14951.0	NR_040469	269630.0	Mm.425231	NR_040469	ENSMUSG00000073147	5031425E22Rik	-	RIKEN cDNA 5031425E22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-79257598-3	chr18	79257493	79257693	+	689.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-148202.0	NM_053099	240427.0	Mm.312871	NM_053099	ENSMUSG00000024548	Setbp1	C130092E12|Seb|mKIAA0437	SET binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-20643742-2	chr9	20643642	20643842	+	739.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013911)	promoter-TSS (NM_013911)	406.0	NM_025401	66177.0	Mm.390165	NM_025401	ENSMUSG00000084786	Ubl5	1110030M22Rik|beacon	ubiquitin-like 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132535142-2	chr4	132535042	132535242	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172400)	promoter-TSS (NM_172400)	272.0	NM_007512	11983.0	Mm.2171	NM_007512	ENSMUSG00000054428	Atpif1	Atpi|IF(1)|If1	ATPase inhibitory factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-8747696-2	chr3	8747596	8747796	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-80658.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-91648444-2	chr6	91648344	91648544	+	560.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35623.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-73367522-2	chr12	73367422	73367622	+	793.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_046013, intron 3 of 3)	intron (NR_046013, intron 3 of 3)	42041.0	NR_046013	380765.0	Mm.490476	NR_046013	ENSMUSG00000056359	D830013O20Rik	Gm891	RIKEN cDNA D830013O20 gene	ncRNA	-1.53362919331644	-1.50201671710775	-1.51157659084044	-1.08120497225282	-1.53141005593807	-1.49994505258991	-1.50941244497383	-1.51802371459528	-1.94474658522739	0.577200604274218	1
Merged-chr9-64925937-4	chr9	64925826	64926026	+	826.662476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144813, intron 9 of 9)	intron (NM_144813, intron 9 of 9)	25681.0	NM_144813	214111.0	Mm.156124	NM_144813	ENSMUSG00000034452	Slc24a1	-	solute carrier family 24 (sodium/potassium/calcium exchanger), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70751304-3	chr8	70751220	70751420	+	840.0238039999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001310465)	TTS (NM_001310465)	-3359.0	NM_001328047	19339.0	Mm.5083	NM_009001	ENSMUSG00000031840	Rab3a	-	RAB3A, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-80775391-4	chr17	80775297	80775497	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA9|LINE|L1	-47372.0	NM_001290345	225028.0	Mm.311948	NM_001081357	ENSMUSG00000024242	Map4k3	4833416M01Rik|4833416M07Rik|9530052P13Rik|Glk|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1	mitogen-activated protein kinase kinase kinase kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-11231466-4	chr19	11231366	11231566	+	930.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045317, intron 1 of 2)	intron (NR_045317, intron 1 of 2)	34649.0	NR_045317	75138.0	Mm.490787	NR_045317	ENSMUSG00000097091	4930526L06Rik	-	RIKEN cDNA 4930526L06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-88251694-4	chr7	88251575	88251775	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26410.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-20294647-4	chr14	20294527	20294727	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359868)	promoter-TSS (NM_001359868)	-63.0	NM_001359870	67725.0	Mm.317636	NM_026341	ENSMUSG00000021809	Nudt13	4933433B15Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-38197601-2	chr5	38197501	38197701	+	615.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22853.0	NM_029162	75079.0	Mm.258741	NM_029162	ENSMUSG00000029127	Zbtb49	4930518A03Rik|Zfp509|Znf509	zinc finger and BTB domain containing 49	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122343127-3	chr5	122343035	122343235	+	786.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144912, intron 5 of 10)	intron (NM_144912, intron 5 of 10)	11060.0	NM_144912	231724.0	Mm.255587	NM_144912	ENSMUSG00000038569	Rad9b	A630082N15Rik|BC021784	RAD9 checkpoint clamp component B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46290881-2	chr19	46290781	46290981	+	961.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-13856.0	NM_001177369	18034.0	Mm.102365	NM_019408	ENSMUSG00000025225	Nfkb2	NF-kappaB2|lyt|p49|p49/p100|p50B|p52	nuclear factor of kappa light polypeptide gene enhancer in B cells 2, p49/p100	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-23971191-4	chr11	23971090	23971290	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-75920.0	NM_172555	216578.0	Mm.470599	NM_172555	ENSMUSG00000020273	Papolg	9630006B20Rik	poly(A) polymerase gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-119772968-4	chr3	119772877	119773077	+	835.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310711, intron 2 of 13)	intron (NM_001310711, intron 2 of 13)	10411.0	NM_001310711	56195.0	Mm.29966	NM_019550	ENSMUSG00000028134	Ptbp2	Ptb2|brPTB|nPTB	polypyrimidine tract binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-94475498-2	chr4	94475398	94475598	+	577.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	81298.0	NM_026368	67770.0	Mm.35170	NM_026368	ENSMUSG00000028578	Caap1	5830433M19Rik|AI536248|CAAP	caspase activity and apoptosis inhibitor 1	protein-coding	1.95585426568819	2.53207901092108	2.10921685643742	2.05339368121777	1.97079750973972	2.55041794219551	2.12482573036567	2.06329049394869	0.0379349097199782	0.964981785886283	0.998431161219273
Merged-chr8-70650482-2	chr8	70650382	70650582	+	677.166626	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_023217, exon 5 of 5)	3' UTR (NM_023217, exon 5 of 5)	9256.0	NM_023217	66522.0	Mm.154906	NM_023217	ENSMUSG00000056204	Pgpep1	2810003H13Rik|Gm19458|PAP-I|PGP|PGP-I|PGPI|Pcp	pyroglutamyl-peptidase I	protein-coding	0.113374475572844	0.836046614941135	1.16985074557121	0.124366745724701	0.11502201762411	0.141138117545645	0.516910332594796	0.125512419796147	-2.60707259629464	0.214839859904989	1
Merged-chr18-18425814-2	chr18	18425714	18425914	+	593.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3C|LINE|L1	-844824.0	NR_045374	75162.0	Mm.60874	NR_045374		4930545E07Rik	-	RIKEN cDNA 4930545E07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-36183930-4	chr4	36183841	36184041	+	935.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166000, intron 4 of 8)	intron (NM_001166000, intron 4 of 8)	-338737.0	NM_175516	242384.0	Mm.132507	NM_175516	ENSMUSG00000045083	Lingo2	B230217C06Rik|Lern3|Lrrn6c	leucine rich repeat and Ig domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-34856397-4	chr18	34856296	34856496	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4811.0	NM_007913	13653.0	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-36461494-2	chr17	36461394	36461594	+	717.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_177634, exon 3 of 6)	exon (NM_177634, exon 3 of 6)	835.0	NM_177634	224753.0	Mm.246581	NM_177634	ENSMUSG00000048231	H2-M10.4	15H	histocompatibility 2, M region locus 10.4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-115828031-4	chr4	115827937	115828137	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175308)	promoter-TSS (NM_175308)	-55.0	NM_175308	100465.0	Mm.35571	NM_175308	ENSMUSG00000028709	Mob3c	AW822253|D130076I06Rik|Mobkl2c	MOB kinase activator 3C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-109441299-3	chr11	109441192	109441392	+	827.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040680, intron 1 of 1)	B3|SINE|B2	1214.0	NR_040680	100503496.0	Mm.265874	NR_040680		Gm45916	-	predicted gene, 45916	ncRNA	2.85254715709687	3.09499524817389	3.09836168621334	3.19896934755686	3.29105465272713	3.74743127363731	2.60976733274569	3.92120823019238	0.688223275620612	0.2558921201482	0.754347336004447
Merged-chr4-126967919-2	chr4	126967819	126968019	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357201)	promoter-TSS (NM_001357201)	4.0	NM_001357201	67785.0	Mm.165401	NM_001114399	ENSMUSG00000042446	Zmym4	6330503C17Rik|AI480785|AW493829|CDIR|D630001M21|MYM|Zfp262|Znf262|mKIAA0425	zinc finger, MYM-type 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-36231615-4	chr17	36231544	36231744	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	26202.0	NM_026308	67676.0	Mm.27131	NM_026308	ENSMUSG00000024446	Rpp21	0610037N01Rik	ribonuclease P 21 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-136602778-4	chr4	136602680	136602880	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347221)	promoter-TSS (NM_001347221)	-57.0	NM_001347221	99982.0	Mm.28540	NM_133872	ENSMUSG00000036940	Kdm1a	1810043O07Rik|AA408884|Aof2|D4Ertd478e|Kdm1|Lsd1|mKIAA0601	lysine (K)-specific demethylase 1A	protein-coding	5.17719585706176	4.56028428959849	3.57382497734097	5.01422233628517	5.16399937945832	5.18630766289854	4.26337728071358	5.03667424350506	0.295818094464525	0.469682081834643	0.925226403981837
Merged-chr2-71744983-4	chr2	71744878	71745078	+	957.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_039557, intron 2 of 3).2	intron (NR_039557, intron 2 of 3).2	25561.0	NR_037979	381371.0	Mm.330284	NM_201366	ENSMUSG00000064263	Platr26	Gm1631	pluripotency associated transcript 26	ncRNA	3.59717574763798	4.65077097399374	4.18316308111177	3.25447476417664	4.50162293670791	5.0925564767011	3.26976165538109	5.00668143952837	0.790316023789785	0.119099262725646	0.541133408551742
Merged-chr19-46606978-2	chr19	46606881	46607081	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177812, intron 2 of 4)	intron (NM_001177812, intron 2 of 4)	7875.0	NM_146099	226178.0	Mm.329895	NM_146099	ENSMUSG00000047731	Wbp1l	D19Wsu162e|Opal1	WW domain binding protein 1 like	protein-coding	3.25012071392758	2.67162319077811	1.23915421623522	3.02644143053054	1.6038340857831	1.5727374525511	1.74679888743432	2.03255528233174	-2.23887847248143	0.0206555117578468	0.18294155763089
Merged-chr8-108896761-3	chr8	108896800	108897000	+	822.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007496, intron 4 of 9)	intron (NM_007496, intron 4 of 9)	-39960.0	NR_037295	100526511.0		NR_037295	ENSMUSG00000093241	Mir3108	mir-3108|mmu-mir-3108	microRNA 3108	ncRNA	0.822328831024036	2.39141494976178	0.897889674267536	1.37861650051559	2.62553837538039	2.9810111645735	0.905447840569771	1.15840113790191	1.47935490226828	0.453049414033385	0.91890520518105
Merged-chr13-107830390-2	chr13	107830289	107830489	+	937.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 2 of 14)	intron (NM_145456, intron 2 of 14)	59675.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	1.68120449589931	1.91053118855253	1.93398078595019	1.296063845627	1.49597435490938	0.956889408916057	0.940159250708047	1.30235024783332	-1.93504436214543	0.120830591665953	0.545687322573484
Merged-chr2-166228612-3	chr2	166228499	166228699	+	819.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45309.0	NR_033467	670775.0	Mm.384326	NR_033467	ENSMUSG00000084840	Gm11468	-	predicted gene 11468	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80751689-4	chr10	80751566	80751766	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT2D|LTR|ERVL	-3537.0	NM_199322	208266.0	Mm.152371	NM_199322	ENSMUSG00000061589	Dot1l	A630076O07|AW907654|Dot1|KMT4|mDot1	DOT1-like, histone H3 methyltransferase (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-70391929-3	chr9	70391834	70392034	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181072, intron 26 of 27)	intron (NM_181072, intron 26 of 27)	13819.0	NR_049200	100885839.0		NR_049200	ENSMUSG00000093763	Mir5626	Gm25590|mir-5626|mmu-mir-5626	microRNA 5626	ncRNA	1.05661415704408	1.18522791397704	1.14579136177717	2.3494833324792	2.66352532081856	3.22067202403151	1.87966290459508	2.88028747184469	2.69848179503417	0.0110685713498095	0.116764993307457
Merged-chr7-25187835-4	chr7	25187754	25187954	+	937.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29871.0	NR_106015	102466794.0		NR_106015	ENSMUSG00000098325	Mir7048	Gm27274|mmu-mir-7048	microRNA 7048	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-69791275-4	chr8	69791180	69791380	+	998.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_133224, exon 1 of 26)	exon (NM_133224, exon 1 of 26)	117.0	NM_133224	170759.0	Mm.186066	NM_133224	ENSMUSG00000031862	Atp13a1	Atp13a|Cgi152|catp	ATPase type 13A1	protein-coding	1.45825316528011	2.37658169654669	2.18343210550103	2.23253800938689	2.23171706294946	2.39413926973492	1.56230430567449	2.24392402635275	0.0998691066364156	0.914960896153104	0.998431161219273
Merged-chr1-179859324-2	chr1	179859224	179859424	+	590.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55309.0	NM_026375	226747.0	Mm.128165	NM_026375	ENSMUSG00000026491	Ahctf1	6230412P20Rik|AV011447|Elys	AT hook containing transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-5119895-4	chr12	5119807	5120007	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164493, intron 5 of 13)	intron (NM_001164493, intron 5 of 13)	202554.0	NM_001362349	320817.0	Mm.210966	NM_001099628	ENSMUSG00000052812	Atad2b	1110014E10Rik|BC032887|C79189|D530031C13Rik	ATPase family, AAA domain containing 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-107918097-2	chr3	107917997	107918197	+	786.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	13517.0	NM_001356351	68312.0	Mm.458189	NM_026672	ENSMUSG00000004035	Gstm7	0610005A07Rik|AI894236|Cd203c	glutathione S-transferase, mu 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-65659622-1	chr3	65659522	65659722	+	1000.0	f1_balb.idr	TTS (NR_106200)	TTS (NR_106200)	334.0	NR_106200	102465905.0		NR_106200	ENSMUSG00000098944	Mir8120	Gm27637|mmu-mir-8120	microRNA 8120	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127767956-2	chr7	127767856	127768056	+	719.666626	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172748, exon 11 of 11)	3' UTR (NM_172748, exon 11 of 11)	-1859.0	NM_198424	269999.0	Mm.36852	NM_198424	ENSMUSG00000043964	Orai3	9930124N15|BC061259|Tmem142c	ORAI calcium release-activated calcium modulator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-62603395-2	chr10	62603295	62603495	+	659.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-1097.0	NM_019553	56200.0	Mm.413275	NM_019553	ENSMUSG00000020075	Ddx21	AI255159|AL022742|D10Ertd645e|D10Wsu42e	DEAD (Asp-Glu-Ala-Asp) box polypeptide 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30626153-4	chr7	30626044	30626244	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025628)	promoter-TSS (NM_025628)	7.0	NM_025628	110323.0	Mm.400	NM_025628	ENSMUSG00000036751	Cox6b1	2010000G05Rik|Cox6b	cytochrome c oxidase, subunit VIb polypeptide 1	protein-coding	5.81746382389947	5.96014609038076	5.95101780196264	6.06341581643586	5.72852466455998	5.76491767246359	5.73543095356901	5.66128825699772	-0.252577998869209	0.278277771465936	0.781792858737504
Merged-chr5-117486281-4	chr5	117486155	117486355	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001312914, intron 1 of 19)	intron (NM_001312914, intron 1 of 19)	72253.0	NM_001312914	333050.0	Mm.437947	NM_001034873	ENSMUSG00000061578	Ksr2	-	kinase suppressor of ras 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-110232465-3	chr5	110232361	110232561	+	766.805542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027922, intron 1 of 12)	Lx5b|LINE|L1	1457.0	NM_027922	71782.0	Mm.288442	NM_027922	ENSMUSG00000029501	Ankle2	1110001J12Rik|AI661024|D5Ertd585e	ankyrin repeat and LEM domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114886972-2	chr11	114886856	114887056	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3085.0	NM_001347654	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-72757750-2	chr15	72757650	72757850	+	623.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029640, intron 16 of 21)	intron (NM_029640, intron 16 of 21)	52574.0	NR_002864	353342.0	Mm.440245	NR_002864	ENSMUSG00000106847	Peg13	-	paternally expressed 13	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-23256155-4	chr1	23256044	23256244	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-16125.0	NR_029533	387225.0		NR_029533	ENSMUSG00000065405	Mir30a	Mirn30a|mir-30a|mmu-mir-30a	microRNA 30a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-88707747-2	chr9	88707647	88707847	+	717.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359992, intron 2 of 2)	L1M4a1|LINE|L1	11840.0	NM_001359992	100039707.0	Mm.347377	NM_001128601	ENSMUSG00000079427	Mthfsl	Gm2382	5, 10-methenyltetrahydrofolate synthetase-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-118611228-4	chr10	118611129	118611329	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54704.0	NR_104123	103214.0	Mm.30529	NR_104123	ENSMUSG00000112230	Ifngas1	AI447422|Tmevpg1	Ifng antisense RNA 1	ncRNA	2.40645205727965	3.38824015967471	3.82547106822591	3.84183787677224	3.97930497080464	2.37029618292143	3.97577136037881	3.67576986383927	0.251780047277144	0.687381256262485	0.996533206832645
Merged-chr10-57840976-2	chr10	57840876	57841076	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	46432.0	NM_020561	57319.0	Mm.2379	NM_020561	ENSMUSG00000019872	Smpdl3a	0610010C24Rik|AI529588|ASM3A|ASML3|ASML3A	sphingomyelin phosphodiesterase, acid-like 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-124741885-4	chr4	124741824	124742024	+	919.775024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_126474)	promoter-TSS (NR_126474)	74.0	NR_126474	16330.0	Mm.296202	NM_008385	ENSMUSG00000028894	Inpp5b	5PTase|AW260155|INPP5P	inositol polyphosphate-5-phosphatase B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-44989288-4	chr14	44989067	44989267	+	906.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008964, exon 1 of 2)	exon (NM_008964, exon 1 of 2)	1056.0	NM_008964	19217.0	Mm.4630	NM_008964	ENSMUSG00000037759	Ptger2	EP2|Ptgerep2	prostaglandin E receptor 2 (subtype EP2)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21492494-2	chr9	21492394	21492594	+	636.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039520, intron 14 of 20)	intron (NM_001039520, intron 14 of 20)	4070.0	NR_029585	387194.0		NR_029585	ENSMUSG00000065547	Mir199a-1	Mirn199|Mirn199a-1|mir-199a-1	microRNA 199a-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-159231651-1	chr1	159231551	159231751	+	1000.0	f0_c57.idr	promoter-TSS (NM_001360878)	promoter-TSS (NM_001360878)	-549.0	NM_001360878	26374.0	Mm.328135	NM_011931	ENSMUSG00000040782	Cop1	AI316802|C80879|Rfwd2	COP1, E3 ubiquitin ligase	protein-coding	2.09337368248785	1.51501740120764	2.28685365790086	1.71796620711689	2.18544701390612	1.06139891845984	1.27945052806826	1.01989450121868	-1.24236932791178	0.297531189743989	0.800257675359925
Merged-chr1-67516106-2	chr1	67516006	67516206	+	823.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	393079.0	NM_001080809	227231.0	Mm.343942	NM_001080809	ENSMUSG00000025991	Cps1	4732433M03Rik|CPS|D1Ucla3	carbamoyl-phosphate synthetase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-95698988-2	chr16	95698888	95699088	+	590.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3419.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-62486927-4	chr10	62486819	62487019	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133672)	promoter-TSS (NM_133672)	-114.0	NM_001358543	30930.0	Mm.260703	NM_133672	ENSMUSG00000020078	Vps26a	AA407240|HB58|Vps26	VPS26 retromer complex component A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-52287563-3	chr9	52287454	52287654	+	856.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-119443.0	NM_001162921	244871.0	Mm.295686	NM_001162921	ENSMUSG00000035164	Zc3h12c	A230108E06|C230027N18Rik|mKIAA1726	zinc finger CCCH type containing 12C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-61707667-4	chr18	61707557	61707757	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172832)	promoter-TSS (NM_172832)	-22.0	NM_172832	240334.0	Mm.234457	NM_172832	ENSMUSG00000024579	Pcyox1l	BC060677|C630049M13	prenylcysteine oxidase 1 like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-122982893-1	chr1	122982793	122982993	+	549.0	f1_balb.idr	Intergenic	L1Md_F|LINE|L1	777748.0	NR_151524	102638832.0	Mm.112794	NR_151524	ENSMUSG00000099960	Gm28590	-	predicted gene 28590	ncRNA	-2.18138529563533	-2.15523716995652	-2.1631445789866	-2.16963996020037	-2.05513010215571	-2.15352360143315	-2.16135451490766	-2.16847729006863	0.759018020146679	0.829933115115583	1
Merged-chr10-8070281-4	chr10	8070178	8070378	+	820.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-114155.0	NM_138667	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	1.19784420637051	0.782896293100761	1.55856661321796	1.99816826388617	1.20873483060596	0.786123899361054	0.990090307526595	1.13216953136349	-1.6868630770236	0.215279935423626	0.705944860566832
Merged-chr7-113369895-4	chr7	113369789	113369989	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133700)	promoter-TSS (NM_133700)	-550.0	NM_133700	68815.0	Mm.238034	NM_133700	ENSMUSG00000038187	Btbd10	1110056N09Rik|Gmrp1	BTB (POZ) domain containing 10	protein-coding	-0.313289878634343	0.0144473889252474	-0.149335970636626	-0.0388280372452855	-0.0720460936845573	-0.30229494807481	-0.305697915194248	-0.161198553939716	-0.963289018527118	0.666241345304384	1
Merged-chr6-66346703-2	chr6	66346603	66346803	+	838.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	74198.0	NR_136927	102633773.0	Mm.272086	NR_136927	ENSMUSG00000107653	Gm31520	-	sterol-C5-desaturase pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-76341887-4	chr16	76341783	76341983	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358238, intron 2 of 3)	RMER15-int|LTR|ERVL	31166.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-38211056-3	chr18	38211096	38211296	+	846.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1434.0	NM_029357	75599.0	Mm.36560	NM_029357	ENSMUSG00000051375	Pcdh1	2010005A06Rik|AI585920	protocadherin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-99204364-2	chr5	99204264	99204464	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48563.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26496301-2	chr17	26496201	26496401	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12171.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	-0.209498994385131	-0.265232177369243	-0.447932648025699	0.0445717542249924	-0.45410535333852	-0.4438310879351	-0.447196689301521	-0.296399473927663	-2.42776305970032	0.316940131785074	1
Merged-chr17-34116817-2	chr17	34116717	34116917	+	664.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_037970, intron 2 of 12)	intron (NR_037970, intron 2 of 12)	3083.0	NR_037970	14312.0	Mm.3444	NM_010238	ENSMUSG00000024335	Brd2	AW228947|D17H6S113E|Frg-1|Fsrg-1|Fsrg1|Nat|Ring3|Rnf3|mKIAA4005	bromodomain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180884488-4	chr1	180884420	180884620	+	995.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA6|LINE|L1	-8588.0	NM_177099	320202.0	Mm.87078	NM_177099	ENSMUSG00000066652	Lefty2	6030463A22Rik|Ebaf|Lefta|Leftb|lefty-2|lefty-B	left-right determination factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115539567-2	chr5	115539467	115539667	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011223, intron 1 of 10)	intron (NM_011223, intron 1 of 10)	-19900.0	NM_007475	11837.0	Mm.5286	NM_007475	ENSMUSG00000067274	Rplp0	36B4|Arbp|L10E	ribosomal protein, large, P0	protein-coding	1.93255048768066	2.97923580988248	1.11645183566887	1.91263184744141	2.17479637290734	3.00236154484774	1.12444133092668	1.36164141725442	-0.0416271680394499	0.970181901152782	0.998431161219273
Merged-chr7-97425017-4	chr7	97424933	97425133	+	787.049988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7483.0	NM_009381	21835.0	Mm.28585	NM_009381	ENSMUSG00000035686	Thrsp	S14|SPOT14	thyroid hormone responsive	protein-coding	2.98727528862934	1.67674781462466	2.69253960468843	2.2742956213818	2.2881258410468	3.49575159234748	1.63284023759984	1.80158162634049	0.088634590890556	0.922431416643291	0.998431161219273
Merged-chr12-17547509-2	chr12	17547409	17547609	+	636.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013614, intron 3 of 11)	intron (NM_013614, intron 3 of 11)	2636.0	NM_013614	18263.0	Mm.34102	NM_013614	ENSMUSG00000011179	Odc1	ODC	ornithine decarboxylase, structural 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88531790-4	chr3	88531698	88531898	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001029890)	promoter-TSS (NM_001029890)	-597.0	NM_001029890	72640.0	Mm.275154	NM_001029890	ENSMUSG00000074480	Mex3a	2700083E18Rik|Gm411|Rkhd4	mex3 RNA binding family member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191325848-4	chr1	191325748	191325948	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025864)	promoter-TSS (NM_025864)	-117.0	NM_025864	66950.0	Mm.236300	NM_025864	ENSMUSG00000026627	Tmem206	2310028N02Rik|AI118576	transmembrane protein 206	protein-coding	6.6025873181698	7.10992579862528	6.84435694282761	6.44097539752882	7.04601133865816	6.94285390832557	7.2583492389536	6.73955977923494	0.257517332708939	0.190947330556089	0.669546561020494
Merged-chr8-128654417-7	chr8	128654336	128654536	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31218.0	NM_010578	16412.0	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	3.62136694522207	2.32332210075363	3.58442099260374	2.67953997428111	3.59344680381457	3.56931739611692	3.04984383917463	4.32908578824925	0.82938476809824	0.181815386294677	0.655475061527504
Merged-chr11-97651917-2	chr11	97651817	97652017	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-11495.0	NM_139311	246198.0	Mm.23685	NM_139311	ENSMUSG00000038437	Mllt6	AI315037|Af17	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-45624035-3	chr11	45623909	45624109	+	930.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-184074.0	NR_045876	100009664.0	Mm.415439	NR_045876		F630206G17Rik	-	RIKEN cDNA F630206G17 gene	ncRNA	2.52774931731951	2.86766043416843	2.7639707715596	4.30941293598923	3.59329541250483	3.15907594932302	3.81893410723854	3.70663207504183	0.370468986571281	0.561099876302727	0.960350977191929
Merged-chr19-45301285-2	chr19	45301185	45301385	+	634.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62449.0	NM_001360122	12234.0	Mm.119717	NM_009771	ENSMUSG00000025217	Btrc	Beta-Trcp1|E3RS-IkappaB|E3RSIkappaB|FWD1|Fbw1a|HOS|SCF b-TRCP|Slimb|b-TrCP|beta-TrCP	beta-transducin repeat containing protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-98157763-3	chr3	98157667	98157867	+	673.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-2867.0	NM_027665	71078.0	Mm.50711	NM_027665	ENSMUSG00000043468	Adam30	4933424D07Rik|svph4	a disintegrin and metallopeptidase domain 30	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-37197042-3	chr10	37196961	37197161	+	857.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-58135.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-11423479-2	chr2	11423379	11423579	+	834.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24979.0	NR_040615	77543.0	Mm.490670	NR_040615	ENSMUSG00000102674	8030442B05Rik	-	RIKEN cDNA 8030442B05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-128316618-2	chr6	128316518	128316718	+	620.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F2|SINE|Alu	-15805.0	NM_011567	21679.0	Mm.14774	NM_011567	ENSMUSG00000030353	Tead4	ETFR-2|Etfr2|FR-19|Rtef1|TEAD-4|TEF-3|Tcf13r1|Tef3|Tefr|Tefr1|Tefr1a	TEA domain family member 4	protein-coding	-0.412993917622901	-0.401842764860794	-0.40551204220591	-0.00302961106141819	-0.15409079424924	0.0782498203136882	-0.404704087278964	-0.407840352119421	0.8716256525172	0.733885289174679	1
Merged-chr6-113370547-2	chr6	113370447	113370647	+	745.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133932, intron 7 of 8)	intron (NM_133932, intron 7 of 8)	6973.0	NM_133932	101206.0	Mm.266811	NM_133932	ENSMUSG00000048930	Tada3	1110004B19Rik|ADA3|AI987856|Tada3l	transcriptional adaptor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-31047796-3	chr17	31047692	31047892	+	842.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-9902.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	0.832125936056568	0.877467686362161	1.52034234607456	1.85304835991493	1.16129656485455	1.29662547347397	1.40332835264309	1.59179654449232	0.0389384638721971	0.976548605261162	0.998431161219273
Merged-chr11-121296975-2	chr11	121296875	121297075	+	552.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001080932, exon 6 of 9)	exon (NM_001080932, exon 6 of 9)	36988.0	NM_001080932	68837.0	Mm.209750	NM_001080932	ENSMUSG00000039275	Foxk2	1110054H05Rik|5730434B08Rik|6230415M23Rik|ILF|Ilf1	forkhead box K2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-83782387-1	chr8	83782287	83782487	+	621.0	f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-41076.0	NM_001163031	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	1.63121296224135	1.41879166645513	2.34731193809768	3.43569835898776	1.47091211850147	1.12643849384024	2.3680878146296	1.5561745066467	-1.68287353780226	0.10961785095885	0.518882815283121
Merged-chr9-103111785-1	chr9	103111685	103111885	+	1000.0	f0_c57.idr	promoter-TSS (NM_173781)	promoter-TSS (NM_173781)	-289.0	NM_173781	270192.0	Mm.490252	NM_173781	ENSMUSG00000032549	Rab6b	9630015C03|AI844641|C330006L04Rik|D9Bwg0185e	RAB6B, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120064187-3	chr11	120064120	120064320	+	775.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009734)	TTS (NM_009734)	-17075.0	NM_007377	11302.0	Mm.6826	NM_007377	ENSMUSG00000025375	Aatk	AATYK|aatyk1|mKIAA0641	apoptosis-associated tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-62232561-2	chr10	62232461	62232661	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1343.0	NM_197996	70423.0	Mm.416781	NM_197996	ENSMUSG00000037031	Tspan15	1110036D12Rik|2700063A19Rik|AW048364|Tm4sf15	tetraspanin 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-8177453-2	chr4	8177353	8177553	+	659.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007592, intron 7 of 8)	intron (NM_007592, intron 7 of 8)	61588.0	NM_007592	12319.0	Mm.119320	NM_007592	ENSMUSG00000041261	Car8	AW546993|Ca8|Cals|Cals1|Carp|wdl	carbonic anhydrase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-47882697-4	chr19	47882596	47882796	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030051, intron 7 of 8)	intron (NM_030051, intron 7 of 8)	16902.0	NM_026619	68214.0	Mm.63791	NM_026619	ENSMUSG00000025069	Gsto2	1700020F09Rik|4930425C18Rik|GSTO 2-2	glutathione S-transferase omega 2	protein-coding	3.35327854949259	4.53072719610223	5.02037642548307	3.71331771224683	3.46759779399462	4.13766384897506	4.69641606874345	4.13341634857967	-0.177803660588062	0.725997475562899	0.998431161219273
Merged-chr7-142061037-4	chr7	142060943	142061143	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028308)	promoter-TSS (NM_028308)	-9.0	NM_028308	101513.0	Mm.53259	NM_028308	ENSMUSG00000025147	Mob2	1110017M21Rik|2700078K21Rik|AI256456|Mmh	MOB kinase activator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-11332138-3	chr2	11332070	11332270	+	925.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7319.0	NR_040369	100503147.0	Mm.91961	NR_040369	ENSMUSG00000086006	Gm13293	-	predicted gene 13293	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106032097-4	chr11	106031995	106032195	+	846.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037712, intron 12 of 12)	IAPEz-int|LTR|ERVK	-4777.0	NM_027946	71833.0	Mm.307455	NM_027946	ENSMUSG00000049354	Dcaf7	1700012F10Rik|2610037L01Rik|C86529|HAN11|Wdr68	DDB1 and CUL4 associated factor 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-73963727-4	chr12	73963630	73963830	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178392)	promoter-TSS (NM_178392)	-800.0	NM_178392	75627.0	Mm.25937	NM_178392	ENSMUSG00000021113	Snapc1	2700033G17Rik|AU015787	small nuclear RNA activating complex, polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-124653020-2	chr4	124652920	124653120	+	667.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4626.0	NM_011141	18991.0	Mm.297371	NM_011141	ENSMUSG00000090125	Pou3f1	Oct-6|Oct6|Otf-6|Otf6|Scip|Test1|Tst-1|Tst1	POU domain, class 3, transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-108563402-5	chr3	108563239	108563439	+	992.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026198)	promoter-TSS (NM_026198)	-873.0	NM_026198	67495.0	Mm.32615	NM_026198	ENSMUSG00000068732	Tmem167b	2010200O16Rik	transmembrane protein 167B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97632928-2	chr11	97632828	97633028	+	934.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3212.0	NM_175332	103551.0	Mm.24506	NM_175332	ENSMUSG00000043439	Epop	AA409164|AI413509|AW539173|E13|E130012A19Rik|esPRC2p48	elongin BC and polycomb repressive complex 2 associated protein	protein-coding	-2.18308165884198	-2.15547475440471	-2.16382331017202	-2.1706810624505	-2.18114370519566	-2.15366558754311	-2.03057248461154	-2.16945352807143	0.759018020146679	0.829933115115583	1
Merged-chr18-36403382-2	chr18	36403282	36403482	+	657.25	f1_balb.idr|f1_c57bl6.idr	TTS (NM_026027)	TTS (NM_026027)	51113.0	NM_026027	67199.0	Mm.30184	NM_026027	ENSMUSG00000024346	Pfdn1	2700086I23Rik|AA408327|AU044714	prefoldin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-78436158-3	chr11	78436048	78436248	+	684.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13914.0	NM_022411	20500.0	Mm.274058	NM_022411	ENSMUSG00000001095	Slc13a2	Nadc-1|Nadc1|mNaDC-1	solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-35597998-3	chr18	35597848	35598048	+	758.43335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357472)	promoter-TSS (NM_001357472)	-669.0	NM_001357470	67869.0	Mm.126534	NM_026420	ENSMUSG00000037058	Paip2	2310050K10Rik|AU045972	polyadenylate-binding protein-interacting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-79610412-3	chr11	79610290	79610490	+	773.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_003283, intron 2 of 2)	intron (NR_003283, intron 2 of 2)	12773.0	NR_003283	790912.0	Mm.447313	NR_003283	ENSMUSG00000087434	Rab11fip4os1	Gm11202	RAB11 family interacting protein 4 (class II), opposite strand 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-98534343-4	chr15	98534222	98534422	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289437)	promoter-TSS (NM_001289437)	-53.0	NR_153345	69612.0	Mm.229107	NM_133714	ENSMUSG00000022992	Kansl2	2310037I24Rik|B930009D17	KAT8 regulatory NSL complex subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-45597174-4	chr17	45596987	45597187	+	937.256226	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199115, intron 1 of 12)	intron (NM_001199115, intron 1 of 12)	-1185.0	NM_001199114	63959.0	Mm.29744	NM_022880	ENSMUSG00000023942	Slc29a1	1200014D21Rik|AA407560|ENT1	solute carrier family 29 (nucleoside transporters), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80831337-3	chr10	80831237	80831437	+	804.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ZP3AR|Satellite|Satellite	2540.0	NR_035503	100316778.0		NR_035503	ENSMUSG00000087993	Mir1982	mir-1982|mmu-mir-1982	microRNA 1982	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-137356927-4	chr4	137356819	137357019	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009861, intron 1 of 5)	intron (NM_009861, intron 1 of 5)	840.0	NM_009861	12540.0	Mm.1022	NM_009861	ENSMUSG00000006699	Cdc42	AI747189|AU018915	cell division cycle 42	protein-coding	4.11034023975084	1.75828481117825	4.05372241155373	2.93730825771069	3.19021454565088	4.46093563204604	3.63435178385531	2.95396379344156	0.248508855224978	0.722144986662013	0.998431161219273
Merged-chr19-45591908-4	chr19	45591758	45591958	+	988.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013907, intron 5 of 8)	intron (NM_013907, intron 5 of 8)	31273.0	NM_172639	226162.0	Mm.21978	NM_172639	ENSMUSG00000041035	Dpcd	Ndac	deleted in primary ciliary dyskinesia	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-121813051-4	chr5	121812993	121813193	+	783.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359153, intron 22 of 23)	intron (NM_001359153, intron 22 of 23)	6180.0	NR_105998	102465624.0		NR_105998	ENSMUSG00000099063	Mir7031	Gm27859|mmu-mir-7031	microRNA 7031	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-128651345-2	chr6	128651245	128651445	+	858.3333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVB4_2-LTR_MM|LTR|ERVK	-11040.0	NM_053165	94071.0	Mm.197689	NM_053165	ENSMUSG00000030364	Clec2h	Clrf|clr-f	C-type lectin domain family 2, member h	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-81021136-5	chr5	81021080	81021280	+	820.565735	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198702)	promoter-TSS (NM_198702)	-413.0	NM_198702	319387.0	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101262688-4	chr15	101262590	101262790	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4156.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	5.3148808963559	4.9102017504834	5.61044319797306	5.73145373938492	5.17437019267289	4.94383206418607	5.01014762904673	5.83633585476251	-0.154793226859156	0.628897346453205	0.981055511574238
Merged-chr5-125465192-2	chr5	125465092	125465292	+	738.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10681.0	NM_030210	78894.0	Mm.431573	NM_030210	ENSMUSG00000029482	Aacs	2210408B16Rik|SUR5	acetoacetyl-CoA synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4923081-2	chr16	4922981	4923181	+	605.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357062, intron 10 of 17)	intron (NM_001357062, intron 10 of 17)	-16030.0	NM_001316715	66911.0	Mm.428698	NM_025839	ENSMUSG00000022516	Nudt16l1	1110001K21Rik|5330437I08Rik|Sdos	nudix (nucleoside diphosphate linked moiety X)-type motif 16-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-121879440-2	chr14	121879340	121879540	+	839.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_131000)	promoter-TSS (NR_131000)	-32.0	NR_130999	78312.0	Mm.188743	NR_130999	ENSMUSG00000102112	1810041H14Rik	-	RIKEN cDNA 1810041H14 gene	ncRNA	0.80899181232298	0.546043279068655	0.193911986706719	0.189343473148483	0.557270008773522	0.201171877386377	0.648135506439146	0.190141474944969	-0.325043377357686	0.870313741650214	1
Merged-chr17-10425532-1	chr17	10425432	10425632	+	801.0	f0_balb.idr	intron (NM_027032, intron 4 of 4)	intron (NM_027032, intron 4 of 4)	-30684.0	NR_077239	319750.0	Mm.383485	NR_077237	ENSMUSG00000089633	A230009B12Rik	-	RIKEN cDNA A230009B12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-100038556-4	chr5	100038513	100038713	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152866, intron 1 of 8)	CpG	609.0	NM_016690	50926.0	Mm.389579	NM_016690	ENSMUSG00000029328	Hnrnpdl	AA407431|AA959857|D5Ertd650e|D5Wsu145e|Hnrnpdl1|Hnrpdl|JKTBP|hnRNP DL|hnRNP-DL	heterogeneous nuclear ribonucleoprotein D-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94475472-2	chr10	94475372	94475572	+	632.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 2 of 4)	B3A|SINE|B2	-39385.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-113663500-4	chr6	113663379	113663579	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 2 of 11)	intron (NM_001113553, intron 2 of 11)	25012.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81147260-2	chr10	81147160	81147360	+	788.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010731, intron 2 of 2)	PB1D10|SINE|Alu	10989.0	NM_010731	16969.0	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-53468591-6	chr17	53468494	53468694	+	760.799988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5273.0	NM_172497	211482.0	Mm.60887	NM_172497	ENSMUSG00000023931	Efhb	4921525D22Rik	EF hand domain family, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-25981457-2	chr8	25981330	25981530	+	884.43335	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_029037, exon 5 of 5)	3' UTR (NM_029037, exon 5 of 5)	-4686.0	NM_029884	52120.0	Mm.28326	NM_029884	ENSMUSG00000037260	Hgsnat	9430010M12Rik|AW208455|D8Ertd354e|Tmem76	heparan-alpha-glucosaminide N-acetyltransferase	protein-coding	0.174469185967933	-0.0904138621497491	-0.439168074928593	-0.442049920714343	-0.446110922772575	-0.43457715852429	-0.262749057478521	-0.441546951445356	-2.54597478826452	0.320066435791994	1
Merged-chr5-113638161-3	chr5	113638063	113638263	+	886.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008153, intron 1 of 2)	MIR|SINE|MIR	5440.0	NM_001359060	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55795926-2	chr14	55795826	55796026	+	909.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7069.0	NM_001164108	56532.0	Mm.46612	NM_019955	ENSMUSG00000022221	Ripk3	2610528K09Rik|AW107945|Rip3	receptor-interacting serine-threonine kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-150854972-2	chr2	150854872	150855072	+	566.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_151505, intron 2 of 12)	intron (NR_151505, intron 2 of 12)	-12402.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-130275204-1	chr2	130275104	130275304	+	1000.0	f1_balb.idr	promoter-TSS (NR_028547)	promoter-TSS (NR_028547)	-311.0	NR_028547	100217452.0		NR_028547	ENSMUSG00000080610	Snord110	MBII-55	small nucleolar RNA, C/D box 110	snoRNA	0.265353832730187	0.0166329322729338	0.576076190868024	0.00702858457313746	0.00111663203122761	0.637039490355234	0.0124072622650897	0.173594215822176	-0.0172231292785426	0.993471161947948	1
Merged-chr4-129809485-2	chr4	129809437	129809637	+	704.5	f0_c57.idr|f1_balb.idr	Intergenic	RSINE1|SINE|B4	-10942.0	NM_008974	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	1.87712015441171	2.6341749836787	2.43688135259684	2.88566743825761	2.03130368047891	1.43445420169176	2.5650306353499	2.58215972494914	-0.59291650501225	0.503653635548089	0.939787919021146
Merged-chr6-83637878-4	chr6	83637780	83637980	+	999.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	18236.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	3.94355548374551	3.37804184044389	2.77668237046975	4.18289528777745	3.73071991683787	3.04944538562481	2.02049242290666	4.15835887313904	-0.310174009571985	0.637454002159713	0.982417279970648
Merged-chr1-144335870-4	chr1	144335762	144335962	+	920.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-86758.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27696546-2	chr2	27696446	27696646	+	904.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011305, intron 1 of 9)	intron (NM_011305, intron 1 of 9)	-12746.0	NM_001290481	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-23552383-2	chr17	23552283	23552483	+	944.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_126484, intron 1 of 1)	intron (NR_126484, intron 1 of 1)	1584.0	NR_126484	320020.0	Mm.445111	NR_126484		6330415G19Rik	-	RIKEN cDNA 6330415G19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3706414-4	chr19	3706312	3706512	+	779.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-1881.0	NM_001358256	72056.0	Mm.23780	NM_028077	ENSMUSG00000035372	1810055G02Rik	AI256204	RIKEN cDNA 1810055G02 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-75732126-2	chr12	75732026	75732226	+	559.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030750, intron 1 of 2)	B2_Mm2|SINE|B2	3603.0	NM_030750	81535.0	Mm.280199	NM_030750	ENSMUSG00000021054	Sgpp1	AI463453|SPP|SPP1|Spph1	sphingosine-1-phosphate phosphatase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127293099-2	chr10	127292999	127293199	+	859.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290183, intron 1 of 2)	intron (NM_001290183, intron 1 of 2)	2306.0	NM_001290183	13198.0	Mm.110220	NM_007837	ENSMUSG00000025408	Ddit3	CHOP-10|CHOP10|chop|gadd153	DNA-damage inducible transcript 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25756921-2	chr7	25756821	25757021	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001190974, exon 19 of 19)	3' UTR (NM_001190974, exon 19 of 19)	-2162.0	NM_178089	232989.0	Mm.254223	NM_144922	ENSMUSG00000040725	Hnrnpul1	E130317O14Rik|E1B-AP5|E1BAP5|Hnrnpul|Hnrpul1	heterogeneous nuclear ribonucleoprotein U-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-56725320-2	chr19	56725220	56725420	+	975.4166869999999	f1_balb.idr|f1_c57bl6.idr	TTS (NM_007419)	TTS (NM_007419)	2948.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-23591016-1	chr15	23590916	23591116	+	581.0	f0_balb.idr	Intergenic	Intergenic	554553.0	NM_001081299	320865.0	Mm.241965	NM_001081299	ENSMUSG00000040420	Cdh18	B230220E17Rik|Cdh14l|Tg(GFAP-APOE_i4)1Hol	cadherin 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-73935893-2	chr17	73935793	73935993	+	995.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_011723, exon 5 of 36)	exon (NM_011723, exon 5 of 36)	14303.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69656035-2	chr11	69655935	69656135	+	917.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001301710)	TTS (NM_001301710)	998.0	NM_009235	20670.0	Mm.347499	NM_009235	ENSMUSG00000041287	Sox15	-	SRY (sex determining region Y)-box 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150874634-2	chr4	150874534	150874734	+	715.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	19564.0	NM_133753	74155.0	Mm.318841	NM_133753	ENSMUSG00000028967	Errfi1	1300002F13Rik|AI788755|Mig-6|Mig6|RALT	ERBB receptor feedback inhibitor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-80619981-4	chr15	80619881	80620081	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289442, intron 1 of 7)	AmnSINE1|SINE|Deu	-3502.0	NM_010815	17444.0	Mm.12947	NM_010815	ENSMUSG00000042351	Grap2	GRAP-2|GRB2L|GRBLG|GRID|Gads|GrbX|Grf40|GrpL|Mona|P38	GRB2-related adaptor protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-57606492-3	chr1	57606378	57606578	+	889.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR11D|LTR|ERVK	-168383.0	NM_144882	67198.0	Mm.159989	NM_144882	ENSMUSG00000038305	Spats2l	2810022L02Rik|A230104H11Rik|AA987173|AI480531|AI842453|AW413586	spermatogenesis associated, serine-rich 2-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-90599367-2	chr6	90599267	90599467	+	783.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_027406)	TTS (NM_027406)	-5513.0	NM_027868	71699.0	Mm.272633	NM_027868	ENSMUSG00000030089	Slc41a3	1010001P06Rik|AI480742|SLC41A1-L2	solute carrier family 41, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102404517-1	chr12	102404417	102404617	+	680.0	f1_c57bl6.idr	intron (NM_011175, intron 4 of 13)	intron (NM_011175, intron 4 of 13)	35296.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	1.83022072217868	1.11779942507691	1.54560179181858	2.40999239917872	1.43824887707277	2.32242742195886	1.09730401044275	2.49747333616925	0.39659527269707	0.729278603171532	0.998431161219273
Merged-chr4-106970941-2	chr4	106970848	106971048	+	681.5	f0_balb.idr|f0_c57.idr	intron (NM_001355532, intron 1 of 14)	intron (NM_001355532, intron 1 of 14)	47763.0	NM_001355532	72475.0	Mm.195635	NM_023672	ENSMUSG00000061887	Ssbp3	2610021L12Rik|2610200M23Rik|5730488C10Rik|AI854733|AW551939|LAST|SSDP1	single-stranded DNA binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-157514288-3	chr2	157514168	157514368	+	675.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45810.0	NM_001291129	18111.0	Mm.34330	NM_010923	ENSMUSG00000067786	Nnat	5730414I02Rik|AW107673|Peg5	neuronatin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-119825594-1	chr8	119825494	119825694	+	654.0	f1_balb.idr	intron (NM_028071, intron 2 of 3)	URR1B|DNA|hAT-Charlie	14985.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101616660-4	chr7	101616565	101616765	+	918.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-35504.0	NM_019915	11872.0	Mm.57008	NM_019915	ENSMUSG00000030651	Art2b	ART2.2|ARTC2|Art|Ly92b|Rt-6|Rt6|Rt6-2	ADP-ribosyltransferase 2b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-14095935-6	chr8	14095984	14096184	+	710.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001145965, exon 1 of 15)	5' UTR (NM_001145965, exon 1 of 15)	209.0	NM_172910	244310.0	Mm.404697	NM_172910	ENSMUSG00000047495	Dlgap2	6430596N04Rik|Dap-2|Dap2|Sapap2	DLG associated protein 2	protein-coding	1.92898591231888	0.66205360148031	1.1931226594178	0.840459976709745	1.40707941738375	0.665036382465558	0.871055571352617	0.844662617188078	-1.10401092944075	0.449608517356399	0.915857893249927
Merged-chr15-78982913-4	chr15	78982829	78983029	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024716)	promoter-TSS (NM_001024716)	-127.0	NM_001024716	110253.0	Mm.123714	NM_138579	ENSMUSG00000033088	Triobp	AI428493|EST478828|Tara|mKIAA1662	TRIO and F-actin binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-6194295-3	chr7	6194185	6194385	+	948.7000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2805.0	NM_178028	232836.0	Mm.246599	NM_178028	ENSMUSG00000034660	Galp	-	galanin-like peptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-87462541-4	chr11	87462445	87462645	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199293, intron 2 of 30)	intron (NM_001199293, intron 2 of 30)	34954.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-46536095-1	chr18	46535995	46536195	+	553.0	f1_balb.idr	Intergenic	Intergenic	-10124.0	NM_173423	240263.0	Mm.38249	NM_173423	ENSMUSG00000033319	Fem1c	2610312A07Rik|3632443A22Rik|AI646567	fem-1 homolog c (C.elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-14119582-1	chr14	14119482	14119682	+	746.0	f1_c57bl6.idr	intron (NM_025550, intron 2 of 7)	B3A|SINE|B2	1322.0	NM_025550	66413.0	Mm.27591	NM_025550	ENSMUSG00000021737	Psmd6	2400006A19Rik	proteasome (prosome, macropain) 26S subunit, non-ATPase, 6	protein-coding	-0.366853823055214	-0.817757735032605	-0.82134278401234	-0.407751149730632	-0.826731349290006	-0.815034507983735	-0.820702062995803	-0.823189746159009	-3.02586318656905	0.311514758661045	1
Merged-chr13-45144150-3	chr13	45144073	45144273	+	855.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	-142077.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	1.86836353628968	2.24463734502792	1.10291068796198	2.67878578807517	2.27221874043148	2.37589865013135	1.10951226597413	1.08346096692707	-0.563506498059847	0.635369167754286	0.982417279970648
Merged-chr19-24156253-3	chr19	24156145	24156345	+	869.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011597, intron 1 of 22)	intron (NM_011597, intron 1 of 22)	-13163.0	NM_001360391	21873.0	Mm.104744	NM_011597	ENSMUSG00000024812	Tjp2	ZO-2	tight junction protein 2	protein-coding	2.70469507916774	2.35618386536396	1.45468188092883	2.57555811194931	2.72719096565518	2.76445118788441	3.24800445386394	2.06900522581735	0.82218421294108	0.324887716458319	0.82760144842185
Merged-chr18-65714124-3	chr18	65714017	65714217	+	736.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177028, intron 3 of 14)	intron (NM_177028, intron 3 of 14)	15849.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-185279365-3	chr1	185279272	185279472	+	878.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163754, intron 31 of 34)	intron (NM_001163754, intron 31 of 34)	-33947.0	NR_029580	387189.0		NR_029580	ENSMUSG00000065581	Mir194-1	Mirn194|Mirn194-1|miR-194|mir-194-1	microRNA 194-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-142424773-3	chr5	142424726	142424926	+	707.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199068, intron 1 of 8)	intron (NM_199068, intron 1 of 8)	23329.0	NM_199068	17425.0	Mm.24214	NM_010812	ENSMUSG00000056493	Foxk1	A630048H08Rik|AI463295|Gm10868|Mnf	forkhead box K1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117903245-2	chr10	117903145	117903345	+	572.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-22214.0	NR_045342	71067.0	Mm.410793	NR_045342	ENSMUSG00000112500	4933411E08Rik	-	RIKEN cDNA 4933411E08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-35220295-3	chr4	35220239	35220439	+	939.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081343, intron 1 of 10)	intron (NM_001081343, intron 1 of 10)	5541.0	NM_001081343	73205.0	Mm.331544	NM_001081343	ENSMUSG00000028300	3110043O21Rik	AI840585|C9orf72	RIKEN cDNA 3110043O21 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52598017-2	chr13	52597917	52598117	+	582.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011518, intron 1 of 13)	RLTR17B_Mm|LTR|ERVK	1135.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44920920-10	chr9	44920763	44920963	+	998.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013795)	promoter-TSS (NM_013795)	-121.0	NM_013795	27425.0	Mm.14663	NM_013795	ENSMUSG00000038717	Atp5l	4933437C06Rik	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit G	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-63896060-4	chr17	63895967	63896167	+	941.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001286415, exon 2 of 18)	5' UTR (NM_001286415, exon 2 of 18)	18001.0	NM_001286415	14158.0	Mm.23039	NM_008000	ENSMUSG00000000127	Fer	AV082135|C330004K01Rik|Fert|Fert2	fer (fms/fps related) protein kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-74868772-3	chr14	74868690	74868890	+	747.472229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033439, intron 1 of 19)	intron (NM_001033439, intron 1 of 19)	79087.0	NM_001252132	380916.0	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-32709589-4	chr12	32709495	32709695	+	984.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-110740.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-113992464-4	chr5	113992352	113992552	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198109, intron 1 of 14)	L1MB8|LINE|L1	1305.0	NM_198109	231637.0	Mm.389682	NM_198109	ENSMUSG00000042121	Ssh1	AW551225|Gm1394|Gm1395|SSH-1|SSH-1L	slingshot protein phosphatase 1	protein-coding	3.11333926602178	2.75616346257921	4.40303864678349	3.67735620549041	3.04812502584095	3.70892078866128	2.97146237812042	4.22921719928068	-0.0709854067407639	0.907934358062051	0.998431161219273
Merged-chr10-26762215-2	chr10	26762115	26762315	+	764.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10297.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-78417777-4	chr17	78417688	78417888	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360407, intron 1 of 9)	CpG	364.0	NM_001285949	225020.0	Mm.236835	NM_199448	ENSMUSG00000056121	Fez2	9030616F16|D17Ertd315e	fasciculation and elongation protein zeta 2 (zygin II)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-103360441-4	chr11	103360335	103360535	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_183288, exon 3 of 3)	exon (NM_183288, exon 3 of 3)	3257.0	NM_183288	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-46314676-4	chr9	46314581	46314781	+	693.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183104, intron 3 of 12)	intron (NM_183104, intron 3 of 12)	5305.0	NM_183104	74361.0	Mm.159169	NM_183104	ENSMUSG00000056617	4931429L15Rik	-	RIKEN cDNA 4931429L15 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-145822328-3	chr6	145822223	145822423	+	714.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	13940.0	NM_027760	71323.0	Mm.158669	NM_027760	ENSMUSG00000030259	Rassf8	5133400D11Rik|AA815821|AW123240|Hoj1|mHoj-1	Ras association (RalGDS/AF-6) domain family (N-terminal) member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-85071679-4	chr8	85071599	85071799	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039514)	promoter-TSS (NM_001039514)	-58.0	NM_001039514	330817.0	Mm.193086	NM_201408	ENSMUSG00000060038	Dhps	Dhs	deoxyhypusine synthase	protein-coding	5.4516103247392	5.84855881942898	5.11304204412657	5.91679698206173	5.81971998857041	5.95602754121614	4.65827946849696	5.27588112858407	-0.114746009164909	0.723897349587503	0.998431161219273
Merged-chr15-77336567-3	chr15	77336490	77336690	+	573.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29537.0	NM_053104	93686.0	Mm.202774	NM_053104	ENSMUSG00000033565	Rbfox2	Fbm2|Fxh|Hrnbp2|Rbm9	RNA binding protein, fox-1 homolog (C. elegans) 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-91668730-4	chr12	91668659	91668859	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 4 of 6)	intron (NM_175367, intron 4 of 6)	-78272.0	NM_175335	83602.0	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-83131535-3	chr13	83131442	83131642	+	586.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-372492.0	NM_001347572	17260.0	Mm.24001	NM_025282	ENSMUSG00000005583	Mef2c	5430401D19Rik|9930028G15Rik|AV011172|Mef2	myocyte enhancer factor 2C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-130517154-3	chr7	130517075	130517275	+	892.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271343, intron 1 of 11)	MTD|LTR|ERVL-MaLR	2405.0	NM_001136054	11907.0	Mm.216321	NM_013799	ENSMUSG00000030850	Ate1	AI225793|AW547406	arginyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-7441808-3	chr19	7441715	7441915	+	818.188904	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053076, intron 1 of 6)	intron (NM_053076, intron 1 of 6)	19242.0	NR_105957	102466781.0		NR_105957	ENSMUSG00000098293	Mir6991	Gm27966|mmu-mir-6991	microRNA 6991	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-76963796-2	chr12	76963696	76963896	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1548.0	NM_001146176	17187.0	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-65936414-3	chr18	65936319	65936519	+	849.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013833, intron 2 of 2)	intron (NM_013833, intron 2 of 2)	2670.0	NM_013833	19434.0	Mm.431047	NM_013833	ENSMUSG00000024518	Rax	7530406A22Rik|E130303K03Rik|Rx|ey-1|ey1	retina and anterior neural fold homeobox	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-37478204-2	chr3	37478104	37478304	+	610.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021343, intron 14 of 15)	intron (NM_021343, intron 14 of 15)	58254.0	NM_021343	57815.0	Mm.172679	NM_021343	ENSMUSG00000027722	Spata5	2510048F20Rik|C78064|Spaf	spermatogenesis associated 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-72117731-2	chr2	72117631	72117831	+	974.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355478, intron 1 of 26)	intron (NM_001355478, intron 1 of 26)	63114.0	NM_001204166	56508.0	Mm.196153	NM_019688	ENSMUSG00000049044	Rapgef4	1300003D15Rik|5730402K07Rik|6330581N18Rik|EPAC 2|Epac-2|Epac2|mKIAA4040	Rap guanine nucleotide exchange factor (GEF) 4	protein-coding	1.71608525484227	1.95743642588417	1.10334143111187	0.874949256262824	1.44591726527536	1.33571790180682	0.891108679662904	1.63825277761098	-0.480788837631621	0.712990701300104	0.998431161219273
Merged-chr9-20887186-2	chr9	20887086	20887286	+	622.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145610)	promoter-TSS (NM_145610)	-989.0	NM_145610	235036.0	Mm.2930	NM_145610	ENSMUSG00000004100	Ppan	A230087P06Rik|SSF1	peter pan homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-19685853-2	chr6	19685753	19685953	+	999.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	130511.0	NR_105789	102465192.0		NR_105789	ENSMUSG00000099149	Mir6370	Gm27480|mmu-mir-6370	microRNA 6370	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-8729648-2	chr10	8729548	8729748	+	757.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_175155, exon 18 of 20)	exon (NM_175155, exon 18 of 20)	156422.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-80172043-4	chr11	80171926	80172126	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172133, intron 7 of 10)	intron (NM_172133, intron 7 of 10)	-11846.0	NM_028019	71956.0	Mm.22985	NM_028019	ENSMUSG00000020707	Rnf135	0610037N03Rik|2410006N06Rik	ring finger protein 135	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-22013204-2	chr16	22013104	22013304	+	746.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_027488, intron 2 of 16)	intron (NR_027488, intron 2 of 16)	3720.0	NM_001357424	75826.0	Mm.297431	NM_029457	ENSMUSG00000022855	Senp2	2310007L05Rik|4930538C18Rik|AI646780|AW554757|Smt3ip2|SuPr-1|mKIAA1331	SUMO/sentrin specific peptidase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124728571-2	chr6	124728471	124728671	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_013545, exon 5 of 16)	exon (NM_013545, exon 5 of 16)	4583.0	NM_013545	15170.0	Mm.271799	NM_013545	ENSMUSG00000004266	Ptpn6	70Z-SHP|Hcph|PTPTY-42|Ptp1C|SH-PTP1|SHP-1|hcp|me	protein tyrosine phosphatase, non-receptor type 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-35026573-2	chr12	35026473	35026673	+	705.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	-20616.0	NM_001014973	217463.0	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-68085778-4	chr10	68085670	68085870	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	106200.0	NM_001359319	170799.0	Mm.209844	NM_133244	ENSMUSG00000037846	Rtkn2	B130039D23Rik|Mbf|Plekhk1	rhotekin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101362092-6	chr7	101362004	101362204	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040111, intron 1 of 33)	intron (NM_001040111, intron 1 of 33)	14035.0	NM_001040111	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	3.64523484891548	4.3902385249541	3.32226632739431	3.40808015635294	3.98440864818119	3.8945627781956	2.86841817160332	3.14087182009121	-0.292505502983564	0.602861352792072	0.973565005745828
Merged-chr7-133776048-2	chr7	133775948	133776148	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025850)	promoter-TSS (NM_025850)	755.0	NM_001286032	101437.0	Mm.199223	NM_133941	ENSMUSG00000030986	Dhx32	3110079L04Rik|4732469F02Rik|AA408140|Ddx32|muDDX32	DEAH (Asp-Glu-Ala-His) box polypeptide 32	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-16467310-4	chr5	16467212	16467412	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER5A|DNA|hAT-Charlie	-86183.0	NM_001289460	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-44381088-4	chr18	44380992	44381192	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027490, intron 1 of 10)	CpG	592.0	NM_027490	70640.0	Mm.87629	NM_027490	ENSMUSG00000024472	Dcp2	2410015D23Rik|5730537H01Rik|AL118268	decapping mRNA 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-25550107-2	chr18	25550007	25550207	+	598.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001362322, intron 2 of 12)	intron (NM_001362322, intron 2 of 12)	129641.0	NM_001362337	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-156228887-4	chr4	156228778	156228978	+	847.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001008233)	promoter-TSS (NM_001008233)	-336.0	NM_001008233	231002.0	Mm.423124	NM_001008233	ENSMUSG00000078485	Plekhn1	BC025458	pleckstrin homology domain containing, family N member 1	protein-coding	3.31157726301141	3.69321541580953	2.29368760727497	3.35695475829516	2.53689113475598	2.85259731588388	2.31218557491117	2.78434403651196	-1.11651734194972	0.104154901258675	0.502944931030958
Merged-chr11-111210716-4	chr11	111210613	111210813	+	959.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	144549.0	NM_008425	16518.0	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding	2.31081404472033	1.54258788022946	3.51077983703568	3.63273220694122	2.19256258941948	3.11155105039632	2.39288222306472	3.08492745788289	-0.458631594546393	0.576301395564428	0.965286201225318
Merged-chr7-139456425-2	chr7	139456325	139456525	+	969.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183144, intron 2 of 15)	intron (NM_183144, intron 2 of 15)	55931.0	NM_001355162	212111.0	Mm.28308	NM_183144	ENSMUSG00000025477	Inpp5a	-	inositol polyphosphate-5-phosphatase A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-37956910-2	chr13	37956810	37957010	+	616.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	37298.0	NM_025965	107513.0	Mm.426670	NM_025965	ENSMUSG00000021427	Ssr1	2510001K09Rik|6330400D04|AI159733|AI452176|SSR|TRAPA	signal sequence receptor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-179435671-2	chr1	179435571	179435771	+	616.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027188, intron 1 of 11)	intron (NM_027188, intron 1 of 11)	82370.0	NM_027188	69726.0	Mm.222338	NM_027188	ENSMUSG00000055067	Smyd3	2410008A19Rik|Zmynd1	SET and MYND domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165887796-2	chr2	165887646	165887846	+	565.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2908.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	0.403587563437066	0.037230723853865	0.610986090469511	0.757520582293184	0.0204205261628585	0.0385502488932209	0.0326632084601177	0.0276303184988027	-4.04930287224509	0.0594734958946046	1
Merged-chr10-127674312-2	chr10	127674212	127674412	+	750.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	-2753.0	NM_173732	210035.0	Mm.251075	NM_173732	ENSMUSG00000040195	Nemp1	Tmem194|Tmem194a	nuclear envelope integral membrane protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129782430-4	chr4	129782312	129782512	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38067.0	NM_008974	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	4.74283044244794	5.72577567616899	5.64003283042441	5.0069449038538	3.80496962119583	4.92550641237507	5.38983131356236	3.85708138989635	-0.807952926751348	0.0541891459116543	0.341232350934934
Merged-chr1-58802039-3	chr1	58801901	58802101	+	772.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080126)	promoter-TSS (NM_001080126)	-501.0	NM_001080126	12370.0	Mm.336851	NM_009812	ENSMUSG00000026029	Casp8	CASP-8|FLICE|MACH|Mch5	caspase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-11773051-1	chr18	11772951	11773151	+	676.0	f1_balb.idr	Intergenic	Intergenic	-66223.0	NM_001146287	63955.0	Mm.40717	NM_022021	ENSMUSG00000040957	Cables1	Cables|ik3-1	CDK5 and Abl enzyme substrate 1	protein-coding	2.7091278767242	1.75271912538976	2.47877232644763	1.85868692105278	2.65878098181838	2.58197791143687	2.60506316689555	2.42268481632293	0.644274990823553	0.433449381917427	0.905745034524566
Merged-chr10-39959281-2	chr10	39959181	39959381	+	741.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001113388, exon 4 of 4)	3' UTR (NM_001113388, exon 4 of 4)	872.0	NM_001173500	100041085.0	Mm.332530	NM_001173500	ENSMUSG00000071335	Mfsd4b3	G630090E17Rik|Naglt1c	major facilitator superfamily domain containing 4B3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-21596613-4	chr16	21596509	21596709	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081366, intron 44 of 46)	intron (NM_001081366, intron 44 of 46)	98056.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127477983-4	chr7	127477858	127478058	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6344.0	NM_145589	233895.0	Mm.44183	NM_145589	ENSMUSG00000030822	Prr14	BC006909	proline rich 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46824424-2	chr8	46824324	46824524	+	568.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008391, intron 6 of 8)	MERVL_2A-int|LTR|ERVL	84679.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107710386-1	chr9	107710286	107710486	+	593.5	f0_balb.idr	promoter-TSS (NM_011349)	promoter-TSS (NM_011349)	89.0	NM_011349	20350.0	Mm.12903	NM_011349	ENSMUSG00000034684	Sema3f	Sema4|Semak	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95634482-2	chr3	95634382	95634582	+	731.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9502.0	NM_001026212	56205.0	Mm.241365	NM_019561	ENSMUSG00000038619	Ensa	1700020C18Rik|2610007F17Rik|AI451924	endosulfine alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-109280871-4	chr4	109280771	109280971	+	875.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007943, intron 1 of 24)	CpG	596.0	NM_007943	13858.0	Mm.318250	NM_007943	ENSMUSG00000028552	Eps15	2410112D09Rik	epidermal growth factor receptor pathway substrate 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-36285424-3	chr4	36285323	36285523	+	795.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001165999, intron 3 of 7)	intron (NM_001165999, intron 3 of 7)	360030.0	NR_030545	100124458.0		NR_030545	ENSMUSG00000077851	Mir876	Mirn876|mir-876|mmu-mir-876	microRNA 876	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117806509-2	chr10	117806409	117806609	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13804.0	NM_134010	103468.0	Mm.12568	NM_134010	ENSMUSG00000052798	Nup107	AW541137|C76801	nucleoporin 107	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-99795635-2	chr12	99795535	99795735	+	547.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030172, intron 5 of 5)	intron (NM_030172, intron 5 of 5)	87807.0	NM_030172	78767.0	Mm.235920	NM_030172	ENSMUSG00000021176	Efcab11	2610021K21Rik|2610110A13Rik	EF-hand calcium binding domain 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-116969832-2	chr13	116969774	116969974	+	628.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081009, intron 3 of 26)	ORR1E|LTR|ERVL-MaLR	55642.0	NM_001081009	52552.0	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	1.07076348055123	2.67696915028649	1.94340859118099	1.88460736281788	1.07731917139275	2.69800055834168	1.95981437126021	1.89504721489135	0.0375838373727373	0.973077494822363	0.998431161219273
Merged-chr7-49633553-3	chr7	49633460	49633660	+	780.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001005232, exon 3 of 4)	exon (NM_001005232, exon 3 of 4)	3275.0	NM_001005232	13172.0	Mm.307176	NM_001005232	ENSMUSG00000030507	Dbx1	AI426026|Dbx	developing brain homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91533714-2	chr16	91533450	91533650	+	804.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6006.0	NR_105786	102465190.0		NR_105786	ENSMUSG00000099308	Mir6367	Gm27467|mmu-mir-6367	microRNA 6367	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-49100153-2	chr11	49100053	49100253	+	684.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	13136.0	NM_008330	15953.0	Mm.24769	NM_008330	ENSMUSG00000078920	Ifi47	47kDa|IRG-47|Ifggc1|Igrd|Iigp4|Iipg4|Irgd	interferon gamma inducible protein 47	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-84302992-4	chr1	84302902	84303102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18357.0	NM_001003948	98496.0	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4|P-CLI1	phosphotyrosine interaction domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-69912557-2	chr8	69912457	69912657	+	712.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286450, intron 10 of 12)	B1_Mur2|SINE|Alu	-9999.0	NM_023312	67184.0	Mm.21162	NM_023312	ENSMUSG00000036199	Ndufa13	2700054G14Rik|AU022060|CDA016|CGI-39|GRIM-19|Grim19	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-97203817-4	chr13	97203701	97203901	+	833.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5444.0	NM_010422	15212.0	Mm.27816	NM_010422	ENSMUSG00000021665	Hexb	-	hexosaminidase B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71462927-3	chr8	71462806	71463006	+	751.577759	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022419, intron 1 of 4)	intron (NM_022419, intron 1 of 4)	751.0	NM_022419	64296.0	Mm.276383	NM_022419	ENSMUSG00000007950	Abhd8	0910001L24Rik|AB030191	abhydrolase domain containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-44379404-2	chr10	44379304	44379504	+	852.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	IMPB_01|Satellite|Satellite	19728.0	NR_035450	100316688.0		NR_035450	ENSMUSG00000089260	Mir1929	mir-1929|mmu-mir-1929	microRNA 1929	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126700252-1	chr7	126700152	126700352	+	1000.0	f1_c57bl6.idr	intron (NM_001301374, intron 10 of 10)	intron (NM_001301374, intron 10 of 10)	3968.0	NM_001301374	12721.0	Mm.290482	NM_009898	ENSMUSG00000030707	Coro1a	Clabp|Lmb3|TACO|p57	coronin, actin binding protein 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-3713398-4	chr2	3713290	3713490	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025626)	promoter-TSS (NM_025626)	-68.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-107584914-3	chr1	107584897	107585097	+	752.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5009.0	NM_011459	20725.0	Mm.83909	NM_011459	ENSMUSG00000026315	Serpinb8	CAP-2|CAP2|NK10|Spi8|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-21101907-1	chr14	21101807	21102007	+	756.599976	f0_balb.idr	intron (NM_134079, intron 2 of 10)	intron (NM_134079, intron 2 of 10)	25755.0	NM_001243041	11534.0	Mm.188734	NM_134079	ENSMUSG00000039197	Adk	2310026J05Rik|5033405D03Rik|AI255373|AI987814|Ak	adenosine kinase	protein-coding	0.556444411412696	1.08088504169471	0.265615601570671	0.258636421568467	0.248652689678112	0.501395038142707	1.22656525509823	0.25986066023604	0.232620997949383	0.901453990986025	1
Merged-chr9-114787327-4	chr9	114787179	114787379	+	819.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5286.0	NM_001252479	102545.0	Mm.35600	NM_133978	ENSMUSG00000032436	Cmtm7	AI481279|Cklfsf7|LNV	CKLF-like MARVEL transmembrane domain containing 7	protein-coding	0.878070354676855	1.25408902679594	1.7683307278903	1.55851975073055	1.12103608573659	2.89104088597447	1.21963896323746	2.26907426146117	1.81718532079347	0.119438200668497	0.541852608376844
Merged-chr1-162705391-2	chr1	162705291	162705491	+	609.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081290, exon 16 of 35)	exon (NM_001081290, exon 16 of 35)	35165.0	NM_001081290	226562.0	Mm.245446	NM_001081290	ENSMUSG00000040225	Prrc2c	1810043M20Rik|9630039I18Rik|A630006J20|Bat2d|Bat2d1|Bat2l2|E130112L15Rik|Prrc3|mKIAA1096	proline-rich coiled-coil 2C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-93911326-2	chr17	93911226	93911426	+	581.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	712158.0	NM_009625	11516.0	Mm.3407	NM_009625	ENSMUSG00000024256	Adcyap1	PACAP	adenylate cyclase activating polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-102883526-4	chr14	102883422	102883622	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	99110.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-91223989-4	chr13	91223886	91224086	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025770)	promoter-TSS (NM_025770)	1.0	NM_025770	66795.0	Mm.235385	NM_025770	ENSMUSG00000021619	Atg10	5330424L23Rik|5430428K15Rik|AI852123|APG10|Agp10|Apg10l|Apg10p|Atg10l	autophagy related 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-62764003-2	chr13	62763873	62764073	+	651.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	3234.0	NR_030493	751548.0		NR_030493	ENSMUSG00000096098	Mir713	Mirn713|mir-713|mmu-mir-713	microRNA 713	ncRNA	-0.206168311302966	-0.182932122016073	0.358720223968455	1.0469477990895	-0.204683729363192	-0.181260033620572	-0.188758657853926	-0.195249923320487	-4.19502700106492	0.0687580894317949	1
Merged-chr1-193649574-1	chr1	193649474	193649674	+	871.5	f0_balb.idr	Intergenic	MLT1H-int|LTR|ERVL-MaLR	-142044.0	NR_029592	387201.0		NR_029592	ENSMUSG00000065533	Mir205	Mirn205|mir-205|mmu-mir-205	microRNA 205	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-43920029-2	chr19	43919929	43920129	+	934.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028029, intron 1 of 15)	RMER6B|LTR|ERVK	20169.0	NM_028029	71972.0	Mm.159024	NM_028029	ENSMUSG00000025195	Dnmbp	2410003L07Rik|2410003M15Rik|TUBA	dynamin binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-90073863-2	chr16	90073763	90073963	+	884.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68374.0	NR_033476	100038709.0	Mm.484070	NR_033476		Gm10789	-	predicted gene 10789	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-86788801-2	chr3	86788701	86788901	+	827.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001195498, intron 16 of 17)	intron (NM_001195498, intron 16 of 17)	132083.0	NM_001195499	70762.0	Mm.44490	NM_027539	ENSMUSG00000028078	Dclk2	6330415M09Rik|AU044875|CL2|CLICK2|Click-II|Dcamkl2	doublecortin-like kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-36484467-4	chr5	36484350	36484550	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001170454)	promoter-TSS (NM_001170454)	-138.0	NM_025725	66717.0	Mm.42368	NM_025725	ENSMUSG00000050677	Ccdc96	4921513E08Rik	coiled-coil domain containing 96	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-15914449-3	chr16	15914326	15914526	+	887.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355731, intron 11 of 18)	intron (NM_001355731, intron 11 of 18)	27140.0	NM_007679	12609.0	Mm.347407	NM_007679	ENSMUSG00000071637	Cebpd	c/EBPdelta	CCAAT/enhancer binding protein (C/EBP), delta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-83926595-2	chr9	83926517	83926717	+	560.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001305935, intron 1 of 10)	intron (NM_001305935, intron 1 of 10)	1480.0	NM_001305935	12040.0	Mm.12819	NM_199195	ENSMUSG00000032263	Bckdhb	BCKDE1B|BCKDH E1-beta	branched chain ketoacid dehydrogenase E1, beta polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19905300-2	chr7	19905200	19905400	+	586.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027514, intron 7 of 7)	intron (NM_027514, intron 7 of 7)	15843.0	NM_027514	52118.0	Mm.227506	NM_027514	ENSMUSG00000040511	Pvr	3830421F03Rik|CD155|D7Ertd458e|HVED|PVS|Taa1|Tage4|mE4|necl-5	poliovirus receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55584789-2	chr14	55584689	55584889	+	632.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_033146, intron 1 of 4)	intron (NM_033146, intron 1 of 4)	465.0	NM_033146	85308.0	Mm.40667	NM_033146	ENSMUSG00000022217	Emc9	1500005A01Rik|Cgi112|Fam158a	ER membrane protein complex subunit 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-63205721-4	chr4	63205607	63205807	+	994.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9705.0	NM_025685	373864.0	Mm.194116	NM_025685	ENSMUSG00000045672	Col27a1	5730512J02Rik|AI449266	collagen, type XXVII, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-72390130-4	chr2	72390046	72390246	+	977.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_178084)	TTS (NM_178084)	-86073.0	NM_025866	66953.0	Mm.270676	NM_025866	ENSMUSG00000055612	Cdca7	2310021G01Rik|AU044109|JPO1	cell division cycle associated 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-110384718-4	chr13	110384589	110384789	+	903.429199	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	-10355.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	1.23737280852718	1.51813563273281	1.70158079425598	1.4276818449387	1.3695030614074	1.19755899355028	1.16769761190908	1.75588997089327	-0.298328874536304	0.797537764920787	0.998431161219273
Merged-chr4-147960381-4	chr4	147960300	147960500	+	990.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19505.0	NM_029841	77034.0	Mm.183076	NM_029841	ENSMUSG00000044496	2510039O18Rik	Kiaa2013	RIKEN cDNA 2510039O18 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166439902-2	chr2	166439802	166440002	+	890.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7549.0	NR_015558	319684.0	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-105641392-2	chr7	105641314	105641514	+	838.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029802)	promoter-TSS (NM_029802)	969.0	NM_001360054	14356.0	Mm.220330	NM_019502	ENSMUSG00000089847	Timm10b	Fxc1|Tim10b|Tim9b	translocase of inner mitochondrial membrane 10B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-95501549-1	chr11	95501449	95501649	+	674.0	f1_c57bl6.idr	Intergenic	Intergenic	13016.0	NM_130858	104079.0	Mm.22970	NM_130858	ENSMUSG00000046719	Nxph3	-	neurexophilin 3	protein-coding	0.288131605833906	0.540821077445384	-0.0747808161034172	-0.0787199278575009	-0.0842855536809273	-0.0685226846529818	-0.0736546085309714	0.458585044175774	-0.860292461109497	0.709295796509746	1
Merged-chr3-89319734-4	chr3	89319655	89319855	+	757.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010108, intron 1 of 4)	CpG	3124.0	NM_010108	13638.0	Mm.331159	NM_010108	ENSMUSG00000028039	Efna3	AW494418|EFL-2|Ehk1-L|Epl3|LERK-3	ephrin A3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-13012783-3	chr1	13012690	13012890	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-21655.0	NM_172841	240726.0	Mm.24481	NM_172841	ENSMUSG00000025938	Slco5a1	4732454B15|A630033C23Rik|AA407151	solute carrier organic anion transporter family, member 5A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-38483396-2	chr18	38483296	38483496	+	586.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	64489.0	NM_001355749	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115158836-4	chr5	115158779	115158979	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175403)	promoter-TSS (NM_175403)	-703.0	NM_175403	109154.0	Mm.153963	NM_175403	ENSMUSG00000048578	Mlec	2410014A08Rik|AI850530|ESTM19|X83352|mKIAA0152	malectin	protein-coding	3.26335773947381	2.98180288221985	4.2747424015365	4.21167494805083	3.00616273128952	3.51122471065005	4.862747904852	3.77647502386812	0.243119829896022	0.679085803668301	0.99525161242239
Merged-chr1-24471421-4	chr1	24471335	24471535	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007733, intron 11 of 50)	intron (NM_007733, intron 11 of 50)	116002.0	NM_007733	12823.0	Mm.329196	NM_007733	ENSMUSG00000026141	Col19a1	-	collagen, type XIX, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-39392323-2	chr1	39392223	39392423	+	571.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357521, intron 6 of 19)	intron (NM_001357521, intron 6 of 19)	24472.0	NM_001252218	114641.0	Mm.379302	NM_053257	ENSMUSG00000073702	Rpl31	Dts	ribosomal protein L31	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-118594601-2	chr7	118594501	118594701	+	717.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001331203, intron 1 of 2)	B4A|SINE|B4	2155.0	NM_001331203	381914.0	Mm.291232	NM_001331201	ENSMUSG00000109284	B230311B06Rik	Gm1695	RIKEN cDNA B230311B06 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-58701702-2	chr17	58701602	58701802	+	592.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17A|LTR|ERVK	289673.0	NM_027001	69239.0	Mm.246732	NM_027001	ENSMUSG00000024227	Pdzph1	2610034M16Rik|AV114557	PDZ and pleckstrin homology domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28181409-2	chr17	28181309	28181509	+	865.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172617, intron 2 of 14)	intron (NM_172617, intron 2 of 14)	3991.0	NM_172617	224656.0	Mm.267359	NM_172617	ENSMUSG00000024220	Zfp523	2810027J07|BC025615|Znf76	zinc finger protein 523	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-90385861-3	chr16	90385761	90385961	+	939.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015755)	promoter-TSS (NM_015755)	-536.0	NM_015755	26559.0	Mm.125874	NM_015755	ENSMUSG00000053414	Hunk	Bstk1|Mak-v	hormonally upregulated Neu-associated kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105566932-3	chr8	105566819	105567019	+	933.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013477)	promoter-TSS (NM_013477)	-855.0	NM_013477	11972.0	Mm.17708	NM_013477	ENSMUSG00000013160	Atp6v0d1	AI267038|Ac39|Atp6d|P39|VATX|Vma6	ATPase, H+ transporting, lysosomal V0 subunit D1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3768836-4	chr4	3768724	3768924	+	995.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 10 of 12)	MTA_Mm|LTR|ERVL-MaLR	53860.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	3.11134690223084	2.66573323670549	3.85292851249262	3.70162310602442	2.22898131085684	1.5865415875372	2.26288604754034	3.29774882580313	-1.56236627348779	0.0386607904262739	0.280238830500214
Merged-chr12-85729575-4	chr12	85729479	85729679	+	910.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16960.0	NM_145447	217721.0	Mm.301076	NM_145447	ENSMUSG00000034258	Flvcr2	CCT|Mfsd7c	feline leukemia virus subgroup C cellular receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-26331411-3	chr11	26331300	26331500	+	743.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55684.0	NM_025923	67030.0	Mm.18875	NM_025923	ENSMUSG00000004018	Fancl	2010322C19Rik|AW554273|B230118H11Rik|Phf9|Pog|gcd	Fanconi anemia, complementation group L	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-20944365-4	chr17	20944260	20944460	+	949.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-1094.0	NM_016891	51792.0	Mm.294138	NM_016891	ENSMUSG00000007564	Ppp2r1a	6330556D22Rik|PP2A|PR65	protein phosphatase 2, regulatory subunit A, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88177278-3	chr3	88177179	88177379	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045997, intron 1 of 2)	intron (NR_045997, intron 1 of 2)	506.0	NR_045997	76642.0	Mm.424420	NR_045997	ENSMUSG00000096935	1700113A16Rik	2210408E11Rik|AA408983	RIKEN cDNA 1700113A16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-67950940-4	chr8	67950856	67951056	+	707.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177698, intron 3 of 14)	intron (NM_177698, intron 3 of 14)	23618.0	NM_177698	234353.0	Mm.32525	NM_027626	ENSMUSG00000030465	Psd3	4931420C21Rik|AI661273|BC003498|D430018P08|EFA6D	pleckstrin and Sec7 domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-86750181-4	chr11	86750034	86750234	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003908, intron 1 of 31)	intron (NM_001003908, intron 1 of 31)	7433.0	NM_001003908	67300.0	Mm.254588	NM_001003908	ENSMUSG00000047126	Cltc	3110065L21Rik|CHC|R74732	clathrin, heavy polypeptide (Hc)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-12937352-2	chr11	12937252	12937452	+	846.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-472392.0	NM_001282993	12808.0	Mm.22847	NM_172496	ENSMUSG00000020173	Cobl	-	cordon-bleu WH2 repeat	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-120652151-5	chr2	120652090	120652290	+	971.3599849999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CGTG)n|Simple_repeat|Simple_repeat	42595.0	NM_001290807	66296.0	Mm.221900	NM_025475	ENSMUSG00000027285	Haus2	1700101G24Rik|2410007P03Rik|AU020217|Cep27	HAUS augmin-like complex, subunit 2	protein-coding	2.35282724405985	1.40290195452037	2.55750798638778	2.9752447484914	2.37299703456118	1.41124407300102	2.4661304143559	2.9904942622949	-0.0248535989702435	0.979165138726107	0.998431161219273
Merged-chr11-86576198-4	chr11	86576084	86576284	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7974.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-22875034-2	chr11	22874934	22875134	+	553.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14698.0	NM_001169114	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102713361-3	chr12	102713261	102713461	+	901.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8492.0	NM_172584	217837.0	Mm.482192	NM_172584	ENSMUSG00000057963	Itpk1	BC031182	inositol 1,3,4-triphosphate 5/6 kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-58521416-2	chr16	58521316	58521516	+	747.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357433, intron 1 of 10)	intron (NM_001357433, intron 1 of 10)	2010.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-147523551-2	chr4	147523451	147523651	+	806.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-29726.0	NM_001014397	433804.0	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154	zinc finger protein 985	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-121583207-4	chr10	121583109	121583309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019786, intron 2 of 20)	intron (NM_019786, intron 2 of 20)	3585.0	NM_019786	56480.0	Mm.34580	NM_019786	ENSMUSG00000020115	Tbk1	1200008B05Rik|AI462036|AW048562	TANK-binding kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-98507090-2	chr15	98506990	98507190	+	935.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	9616.0	NM_001001807	258502.0	Mm.377539	NM_001001807	ENSMUSG00000054036	Olfr279	MOR122-1|Olfr234|Olfr234-ps1|Olfr279-ps1	olfactory receptor 279	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-100204277-2	chr15	100204177	100204377	+	675.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_172819, intron 27 of 32)	intron (NM_172819, intron 27 of 32)	-16241.0	NR_037311	100499528.0		NR_037311	ENSMUSG00000092752	Mir3473a	Mir3473|mir-3473a|mmu-mir-3473|mmu-mir-3473a	microRNA 3473a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5640264-3	chr19	5640133	5640333	+	728.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009045, intron 5 of 10)	intron (NM_009045, intron 5 of 10)	2743.0	NM_009045	19697.0	Mm.249966	NM_009045	ENSMUSG00000024927	Rela	p65	v-rel reticuloendotheliosis viral oncogene homolog A (avian)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-57862155-3	chr1	57862050	57862250	+	839.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164566, intron 2 of 11)	intron (NM_001164566, intron 2 of 11)	16579.0	NM_001164566	67198.0	Mm.159989	NM_144882	ENSMUSG00000038305	Spats2l	2810022L02Rik|A230104H11Rik|AA987173|AI480531|AI842453|AW413586	spermatogenesis associated, serine-rich 2-like	protein-coding	1.09908010813627	1.25321804641069	0.897496813548042	1.03132871944306	0.985860001576539	0.931640443090568	1.72737648567852	0.691334888692969	0.368400126680284	0.788495487812216	0.998431161219273
Merged-chr7-64404152-3	chr7	64404053	64404253	+	798.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028626, intron 2 of 2)	intron (NM_028626, intron 2 of 2)	11531.0	NM_001355124	73724.0	Mm.10093	NM_028626	ENSMUSG00000033429	Mcee	1110007A04Rik	methylmalonyl CoA epimerase	protein-coding	-2.18243820993087	-2.15538464093652	-2.16356586349869	-2.17028616330028	-2.18053909940952	-2.15361173587851	-2.16171381403791	-2.0403552525549	0.759018020146679	0.829933115115583	1
Merged-chr7-5062812-1	chr7	5062712	5062912	+	1000.0	f0_c57.idr	intron (NM_001205231, intron 1 of 11)	intron (NM_001205231, intron 1 of 11)	669.0	NM_001205231	22185.0	Mm.360389	NM_133671	ENSMUSG00000030435	U2af2	65kDa	U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2	protein-coding	0.527347416792034	0.199872881261416	0.493354113845201	0.468657877153868	0.626965509418591	0.201025486935226	0.500376690925627	0.191545899989512	-0.223248437343583	0.905540729524263	1
Merged-chr12-16828699-4	chr12	16828598	16828798	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17733.0	NM_033270	50496.0	Mm.23296	NM_033270	ENSMUSG00000057469	E2f6	AI462434|E2F6a|E2F6b|EMA	E2F transcription factor 6	protein-coding	4.40852628908096	4.25161237748148	2.54243066051127	3.36380178493957	4.13429728800106	4.3369678565847	3.04368483287555	3.90980720939446	0.137505741021009	0.811202979934471	0.998431161219273
Merged-chr7-19956662-4	chr7	19956550	19956750	+	936.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5907.0	NM_027308	70080.0	Mm.98583	NM_027308	ENSMUSG00000040498	Igsf23	2210010C17Rik	immunoglobulin superfamily, member 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-23562033-2	chr13	23561933	23562133	+	741.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_178205, exon 1 of 1)	exon (NM_178205, exon 1 of 1)	332.0	NM_178205	319151.0	Mm.261658	NM_178205	ENSMUSG00000069273	Hist1h3e	H3-f|H3.1	histone cluster 1, H3e	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140347403-2	chr5	140347303	140347503	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172277, intron 7 of 10)	intron (NM_172277, intron 7 of 10)	15447.0	NM_001356584	17766.0	Mm.118846	NM_008637	ENSMUSG00000036639	Nudt1	Mth1	nudix (nucleoside diphosphate linked moiety X)-type motif 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-142398360-1	chr3	142398260	142398460	+	656.0	f0_balb.idr	Intergenic	Lx9|LINE|L1	-2664.0	NM_019808	56376.0	Mm.117709	NM_019808	ENSMUSG00000028273	Pdlim5	1110001A05Rik|AI987914|C87059|Enh|Enh1|Enh2|Enh3|LIM	PDZ and LIM domain 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-50898186-4	chr14	50898088	50898288	+	960.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4933.0	NM_001166651	546611.0	Mm.390692	NM_001166651	ENSMUSG00000090799	Klhl33	EG546611	kelch-like 33	protein-coding	2.33555409049521	2.00397808423781	1.56555338699578	2.62766229748081	2.16876296921826	1.356798101111	2.55446103034924	2.47517737889327	0.0559816207481553	0.9534009938245	0.998431161219273
Merged-chr11-120013307-4	chr11	120013190	120013390	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198787, intron 9 of 13)	intron (NM_001198787, intron 9 of 13)	-1477.0	NR_037225	100526518.0		NR_037225	ENSMUSG00000105524	Mir3065	mir-3065|mmu-mir-3065	microRNA 3065	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-19768870-4	chr14	19768775	19768975	+	963.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008695, exon 4 of 21)	exon (NM_008695, exon 4 of 21)	17618.0	NM_008695	18074.0	Mm.20348	NM_008695	ENSMUSG00000021806	Nid2	AW547149|Ly111|NID-2|entactin-2|nidogen-2	nidogen 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-129708467-2	chr3	129708367	129708567	+	838.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001329594, intron 8 of 17)	intron (NM_001329594, intron 8 of 17)	16619.0	NM_001310737	13645.0	Mm.252481	NM_010113	ENSMUSG00000028017	Egf	AI790464	epidermal growth factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-103967993-4	chr3	103967885	103968085	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163467)	promoter-TSS (NM_001163467)	-125.0	NM_001163467	18685.0	Mm.385178	NM_013629	ENSMUSG00000058388	Phtf1	AU041898|AW049785|Phft|Phtf	putative homeodomain transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-57598535-4	chr18	57598417	57598617	+	961.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311063, intron 5 of 5)	ORR1E|LTR|ERVL-MaLR	40068.0	NR_045360	70157.0	Mm.490532	NR_045360		2210409D07Rik	-	RIKEN cDNA 2210409D07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-150311424-4	chr2	150311309	150311509	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027017, intron 3 of 3)	intron (NM_027017, intron 3 of 3)	51356.0	NM_027017	69277.0	Mm.272470	NM_027017	ENSMUSG00000063364	3300002I08Rik	2900016H11Rik	RIKEN cDNA 3300002I08 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-67871054-1	chr13	67870954	67871154	+	577.0	f0_c57.idr	Intergenic	Intergenic	7728.0	NM_001001185	408058.0	Mm.177840	NM_001001185	ENSMUSG00000064063	BC048507	-	cDNA sequence BC048507	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111272740-2	chr12	111272640	111272840	+	584.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_033603, intron 3 of 11)	intron (NM_033603, intron 3 of 11)	1644.0	NM_033603	93835.0	Mm.197639	NM_033603	ENSMUSG00000021278	Amn	-	amnionless	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-90034646-2	chr7	90034546	90034746	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_110365, intron 1 of 5)	B2_Mm2|SINE|B2	5487.0	NR_110364	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-91464767-1	chr13	91464667	91464867	+	660.0	f0_balb.idr	intron (NM_001360776, intron 1 of 15)	intron (NM_001360776, intron 1 of 15)	3670.0	NM_024186	66970.0	Mm.343095	NM_024186	ENSMUSG00000003992	Ssbp2	1500004K09Rik|2310079I02Rik|9330163K02Rik|A830008M03Rik|AU067692|AW558684|Hspc116|SSDP2	single-stranded DNA binding protein 2	protein-coding	-0.696163854512474	-0.944158366292128	-0.954309940727346	-0.956421472985335	-0.959397431369417	-0.941573008238724	-0.953387951697818	-0.421153821691454	1.09996124479401	0.728260505401646	1
Merged-chr17-86336728-1	chr17	86336628	86336828	+	541.0	f1_balb.idr	intron (NM_011104, intron 1 of 14)	intron (NM_011104, intron 1 of 14)	-49550.0	NR_045435	72104.0	Mm.443401	NR_045435	ENSMUSG00000100738	2010106C02Rik	-	RIKEN cDNA 2010106C02 gene	ncRNA	-0.704347454874818	-1.05455977589609	-1.06579631309813	-1.07151958844463	-1.07425770968218	-0.707535259853554	-1.06325260737347	-1.07118043667044	-0.117338903016028	0.971356004086452	1
Merged-chr16-21253371-2	chr16	21253271	21253471	+	668.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_046162, intron 4 of 4)	intron (NR_046162, intron 4 of 4)	2695.0	NR_106145	102465781.0		NR_106145	ENSMUSG00000098400	Mir7680	Gm27417|mmu-mir-7680	microRNA 7680	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-13712196-3	chr3	13712098	13712298	+	714.133362	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357034, intron 1 of 7)	CT-rich|Low_complexity|Low_complexity	-59333.0	NR_040598	75203.0	Mm.490940	NR_040598		4930539N22Rik	-	RIKEN cDNA 4930539N22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-64042549-2	chr14	64042449	64042649	+	824.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42861.0	NM_001081063	71037.0	Mm.19977	NM_001081063	ENSMUSG00000034623	Prss55	4933401F05Rik	protease, serine 55	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-29526139-4	chr6	29526033	29526233	+	995.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_012057)	promoter-TSS (NM_012057)	-492.0	NM_001311083	27056.0	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129020523-6	chr4	129020344	129020544	+	880.888916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27220.0	NM_001033966	11637.0	Mm.29460	NM_016895	ENSMUSG00000028792	Ak2	Ak-2|D4Ertd220e	adenylate kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-98062660-2	chr3	98062560	98062760	+	854.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_010928, intron 2 of 33)	(GA)n|Simple_repeat|Simple_repeat	49122.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31172947-4	chr14	31172836	31173036	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022656, intron 19 of 20)	intron (NM_022656, intron 19 of 20)	-4295.0	NM_138672	192187.0	Mm.220821	NM_138672	ENSMUSG00000042286	Stab1	FEEL-1|FELE-1|MFEEL-1|MS-1|STAB-1|mKIAA0246	stabilin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-107012390-4	chr11	107012283	107012483	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12858.0	NM_010655	16647.0	Mm.12508	NM_010655	ENSMUSG00000018362	Kpna2	2410044B12Rik|IPOA1|PTAC58|Rch1	karyopherin (importin) alpha 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-92861775-1	chr10	92861675	92861875	+	1000.0	f0_balb.idr	intron (NM_001347060, intron 61 of 67)	intron (NM_001347060, intron 61 of 67)	-139357.0	NM_008682	17997.0	Mm.2998	NM_008682	ENSMUSG00000019988	Nedd1	-	neural precursor cell expressed, developmentally down-regulated gene 1	protein-coding	0.170709562638736	0.514525492995126	0.602911399337312	0.457712789194616	0.525090057106458	0.187529734205937	0.182344638210056	0.462074453118534	-0.704007652310017	0.710409257338984	1
Merged-chr11-78397688-2	chr11	78397588	78397788	+	864.333374	f1_balb.idr|f1_c57bl6.idr	exon (NM_022411, exon 12 of 12)	exon (NM_022411, exon 12 of 12)	3203.0	NR_003282	790911.0	Mm.457257	NR_003282	ENSMUSG00000085747	Slc13a2os	Gm11194	solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-82906380-4	chr18	82906348	82906548	+	733.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4431.0	NM_183033	329003.0	Mm.326526	NM_183033	ENSMUSG00000058881	Zfp516	C330029B10Rik|D230016L03|Zfp26l|Znf516|mKIAA0222	zinc finger protein 516	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-34747013-4	chr19	34746919	34747119	+	862.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172838)	promoter-TSS (NM_172838)	92.0	NM_172838	240638.0	Mm.74636	NM_172838	ENSMUSG00000009378	Slc16a12	3230401A21|AW210596	solute carrier family 16 (monocarboxylic acid transporters), member 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-25626609-1	chr2	25626509	25626709	+	582.0	f0_balb.idr	intron (NM_007995, intron 5 of 9)	intron (NM_007995, intron 5 of 9)	1365.0	NM_007995	14133.0	Mm.10510	NM_007995	ENSMUSG00000026938	Fcna	Fcn1	ficolin A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-45451205-2	chr5	45451105	45451305	+	858.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024236)	promoter-TSS (NM_024236)	-976.0	NM_024236	110391.0	Mm.30204	NM_024236	ENSMUSG00000015806	Qdpr	2610008L04Rik|D5Ertd371e|Dhpr|PKU2	quinoid dihydropteridine reductase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-92039123-3	chr16	92038949	92039149	+	848.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	-19273.0	NM_017391	53881.0	Mm.217354	NM_017391	ENSMUSG00000089774	Slc5a3	AA623876|BF642829|Smit1	solute carrier family 5 (inositol transporters), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140206043-4	chr5	140205948	140206148	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152617, intron 10 of 16)	intron (NR_152617, intron 10 of 16)	-31130.0	NM_001359027	17120.0	Mm.27250	NM_010752	ENSMUSG00000029554	Mad1l1	AI173502|AW550425|Mad1	MAD1 mitotic arrest deficient 1-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-86214400-4	chr15	86214310	86214510	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145476)	promoter-TSS (NM_145476)	-49.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88081392-2	chr3	88081292	88081492	+	746.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033484)	promoter-TSS (NM_001033484)	-659.0	NM_001033484	404710.0	Mm.331133	NM_001033484	ENSMUSG00000028068	Iqgap3	AI593484|D030034H08	IQ motif containing GTPase activating protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-44182592-4	chr4	44182482	44182682	+	879.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14299.0	NM_001038993	73469.0	Mm.262859	NM_175201	ENSMUSG00000035696	Rnf38	1700065B19Rik|2610202O07Rik|AA673263|Oip1	ring finger protein 38	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-87112043-4	chr1	87111926	87112126	+	957.710693	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10420.0	NM_001081082	76768.0	Mm.58068	NM_001081082	ENSMUSG00000079440	Alpi	2010001C14Rik|Akp6|gIAP	alkaline phosphatase, intestinal	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-45546176-5	chr11	45546099	45546299	+	939.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-261884.0	NR_045876	100009664.0	Mm.415439	NR_045876		F630206G17Rik	-	RIKEN cDNA F630206G17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127283549-2	chr10	127283449	127283649	+	779.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_033072, exon 10 of 13)	exon (NM_033072, exon 10 of 13)	5469.0	NM_001347171	110962.0	Mm.372826	NM_033072	ENSMUSG00000025409	Mbd6	D10Wsu93e	methyl-CpG binding domain protein 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-124847792-4	chr4	124847714	124847914	+	880.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008636, exon 11 of 11)	3' UTR (NM_008636, exon 11 of 11)	2750.0	NM_001347196	68920.0	Mm.272397	NM_001142727	ENSMUSG00000078570	1110065P20Rik	C530005M16Rik	RIKEN cDNA 1110065P20 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-73944541-2	chr17	73944441	73944641	+	692.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011723, intron 1 of 35)	intron (NM_011723, intron 1 of 35)	5655.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-54986377-4	chr12	54986279	54986479	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013815)	promoter-TSS (NM_013815)	-43.0	NM_013815	217578.0	Mm.479583	NM_013815	ENSMUSG00000035021	Baz1a	Acf1|B930060C03|BC065123|Gtl5|Wcrf180|cbp146	bromodomain adjacent to zinc finger domain 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-147013880-3	chr2	147013761	147013961	+	998.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356402, intron 1 of 28)	intron (NM_001356402, intron 1 of 28)	862.0	NM_001356402	24128.0	Mm.3065	NM_011917	ENSMUSG00000027433	Xrn2	-	5'-3' exoribonuclease 2	protein-coding	4.085038954463	3.03281308218583	4.02717355122346	4.08964168866598	4.20235095444663	3.90892630842975	4.05693192988712	3.4177526726687	0.0645381846483102	0.895629056742777	0.998431161219273
Merged-chr11-99164648-4	chr11	99164555	99164755	+	848.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9578.0	NM_007719	12775.0	Mm.2932	NM_007719	ENSMUSG00000037944	Ccr7	CC-CKR-7|CCR-7|CD197|Cdw197|Cmkbr7|EBI1|Ebi1h	chemokine (C-C motif) receptor 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-98096012-2	chr7	98095912	98096112	+	659.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008663, intron 8 of 48)	intron (NM_008663, intron 8 of 48)	13236.0	NM_001256082	17921.0	Mm.1403	NM_008663	ENSMUSG00000030761	Myo7a	Hdb|Myo7|USH1B|nmf371|polka|sh-1|sh1	myosin VIIA	protein-coding	-1.33927601290251	-1.1500655493574	-1.31937625420031	-1.32768700813376	-0.948048553500553	-1.30706634129226	-1.31708589100289	-1.32619938715315	1.06814573574813	0.753975296856039	1
Merged-chr13-109299048-4	chr13	109298932	109299132	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011056, intron 3 of 16)	intron (NM_011056, intron 3 of 16)	-25712.0	NR_030644	100124489.0		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-108170664-4	chr12	108170569	108170769	+	852.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028262, intron 1 of 12)	intron (NM_028262, intron 1 of 12)	8615.0	NM_028262	52690.0	Mm.159185	NM_028262	ENSMUSG00000056770	Setd3	2610102I01Rik|2610305M23Rik|6030490B17Rik|D12Ertd771e	SET domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69618306-1	chr11	69618206	69618406	+	545.0	f1_balb.idr	promoter-TSS (NM_011367)	promoter-TSS (NM_011367)	-401.0	NM_011367	20415.0	Mm.1431	NM_011367	ENSMUSG00000005202	Shbg	ABP	sex hormone binding globulin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55556422-4	chr19	55556345	55556545	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360431, intron 8 of 8)	intron (NM_001360431, intron 8 of 8)	145759.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-60595570-2	chr18	60595470	60595670	+	755.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177340, exon 3 of 3)	3' UTR (NM_177340, exon 3 of 3)	-3854.0	NM_133363	170947.0	Mm.159257	NM_133363	ENSMUSG00000049173	Myoz3	4833419K08Rik|Fatz-3	myozenin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-114674357-2	chr5	114674257	114674457	+	610.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019821, intron 3 of 4)	intron (NM_019821, intron 3 of 4)	-15936.0	NM_022017	63873.0	Mm.266450	NM_022017	ENSMUSG00000014158	Trpv4	0610033B08Rik|OTRPC4|Trp12|VR-OAC|VRL-2|VROAC	transient receptor potential cation channel, subfamily V, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-64205502-2	chr11	64205402	64205602	+	636.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	126018.0	NR_033780	66456.0	Mm.124828	NR_033780	ENSMUSG00000087497	2810001G20Rik	AW045514	RIKEN cDNA 2810001G20 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-38419703-2	chr18	38419611	38419811	+	787.0	f0_balb.idr|f0_c57.idr	intron (NM_001355749, intron 1 of 7)	intron (NM_001355749, intron 1 of 7)	804.0	NM_001355749	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45517024-2	chr7	45516924	45517124	+	841.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_001045555, intron 6 of 13)	B2_Mm1t|SINE|B2	2422.0	NM_001290998	56734.0	Mm.439742	NM_008807	ENSMUSG00000023467	Tulp2	Pdet	tubby-like protein 2	protein-coding	1.35979471199479	1.70142400575834	2.30234559938589	2.32644932761462	1.36865905307991	1.71318281946935	2.32101727516966	2.3388218520349	0.0356695273066478	0.971966752461438	0.998431161219273
Merged-chr16-4628076-2	chr16	4627976	4628176	+	612.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030205, intron 26 of 27)	intron (NM_030205, intron 26 of 27)	-3130.0	NM_025571	66449.0	Mm.354760	NM_025571	ENSMUSG00000014301	Pam16	2010110I09Rik|AV006767|CGI-136|Magmas|Tim16|Timm16	presequence translocase-asssociated motor 16 homolog (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-21586968-3	chr5	21586863	21587063	+	884.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199632, intron 7 of 20)	B3A|SINE|B2	43436.0	NM_028977	74511.0	Mm.439963	NM_028977	ENSMUSG00000039883	Lrrc17	37kDa|4833425M04Rik|6130400C22Rik|P37nb	leucine rich repeat containing 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-38386742-2	chr15	38386642	38386842	+	798.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER102a|DNA|hAT-Charlie	-86031.0	NM_001289471	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-42162189-2	chr15	42162089	42162289	+	595.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-292469.0	NM_175456	223513.0	Mm.148913	NM_175456	ENSMUSG00000042895	Abra	C130068O12Rik|STARS	actin-binding Rho activating protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-8677672-4	chr18	8677580	8677780	+	968.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-535176.0	NM_008058	14370.0	Mm.184289	NM_008058	ENSMUSG00000036904	Fzd8	Fz8	frizzled class receptor 8	protein-coding	4.85981667374205	4.94162506866015	4.872028138775	5.27525520409022	4.706365808015	3.57786839800472	4.27719515988682	3.32808266887976	-1.12572552065752	0.00660736237819012	0.0818957993941374
Merged-chr9-118743626-2	chr9	118743526	118743726	+	746.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 1 of 13)	intron (NM_001113514, intron 1 of 13)	31934.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-38458923-4	chr16	38458808	38459008	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009855)	promoter-TSS (NM_009855)	-25.0	NM_001359898	12519.0	Mm.89474	NM_009855	ENSMUSG00000075122	Cd80	B71|Cd28l|Ly-53|Ly53|MIC17|TSA1	CD80 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-172525325-4	chr1	172525227	172525427	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027972, intron 1 of 11)	intron (NM_027972, intron 1 of 11)	4197.0	NM_027972	71870.0	Mm.78373	NM_027972	ENSMUSG00000026546	Cfap45	1700028D05Rik|Ccdc19|Nesg1	cilia and flagella associated protein 45	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-112466785-4	chr13	112466688	112466888	+	933.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010560, intron 1 of 16)	intron (NM_010560, intron 1 of 16)	2718.0	NM_010560	16195.0	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140642261-4	chr5	140642146	140642346	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001308040, intron 1 of 12)	intron (NM_001308040, intron 1 of 12)	6785.0	NM_001308040	78339.0	Mm.28947	NM_175274	ENSMUSG00000036565	Ttyh3	2900029G13Rik|AI414930|TTY3|mTTY3	tweety family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-36008222-2	chr2	36008122	36008322	+	811.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28598.0	NM_029774	74410.0	Mm.21591	NM_028921	ENSMUSG00000026885	Ttll11	4932702F08Rik|4933424A20Rik|AU043211|D2Ertd624e	tubulin tyrosine ligase-like family, member 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-64226960-2	chr7	64226860	64227060	+	785.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_001039104, exon 16 of 27)	exon (NM_001039104, exon 16 of 27)	21154.0	NR_029805	387207.0		NR_029805	ENSMUSG00000065585	Mir211	Mirn211|mir-211|mmu-mir-211	microRNA 211	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75176579-2	chr11	75176479	75176679	+	790.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_027136, exon 2 of 2)	3' UTR (NM_027136, exon 2 of 2)	2229.0	NM_027136	246257.0	Mm.41496	NM_027136	ENSMUSG00000038268	Ovca2	9030414M07Rik	candidate tumor suppressor in ovarian cancer 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-177489997-4	chr1	177489926	177490126	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44205.0	NM_013915	30928.0	Mm.330700	NM_013915	ENSMUSG00000063659	Zbtb18	RP58|Zfp238|Znf238.|zfp-238	zinc finger and BTB domain containing 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-69490887-2	chr7	69490787	69490987	+	583.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5207.0	NR_045940	73796.0	Mm.410832	NR_045940	ENSMUSG00000108885	4930402F11Rik	-	RIKEN cDNA 4930402F11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-79038053-4	chr15	79037945	79038145	+	940.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_013847, exon 9 of 9)	3' UTR (NM_013847, exon 9 of 9)	-3840.0	NM_015738	14429.0	Mm.390805	NM_015738	ENSMUSG00000114755	Galr3	Galnr3	galanin receptor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-58517312-2	chr16	58517212	58517412	+	778.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357433, intron 1 of 10)	intron (NM_001357433, intron 1 of 10)	6114.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	-2.18292257394068	-2.15545247547656	-2.03304972317742	-2.17058342868585	-2.18099422382073	-2.1536522739386	-2.16187909550322	-2.16936197735154	-0.683654500252594	0.846597994014493	1
Merged-chr2-6538430-2	chr2	6538330	6538530	+	805.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	183232.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-116184974-2	chr9	116184850	116185050	+	546.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-4230.0	NR_152204	100043817.0	Mm.404276	NR_152204		Gm4668	-	predicted gene 4668	ncRNA	0.470907857977106	0.0166711411972504	0.0112214588999143	0.00701592673499743	0.650924897016178	0.516722053543775	0.0124235252299165	0.00775069937695189	1.37768380123187	0.54057660505099	1
Merged-chr1-139003737-4	chr1	139003641	139003841	+	997.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181347, intron 1 of 20)	intron (NM_181347, intron 1 of 20)	26084.0	NR_108103	78229.0	Mm.437838	NR_108103	ENSMUSG00000104900	4930596I21Rik	-	RIKEN cDNA 4930596I21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-20675540-2	chr14	20675440	20675640	+	613.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172596, intron 1 of 22)	intron (NM_172596, intron 1 of 22)	1219.0	NM_001168273	218811.0	Mm.173119	NM_172596	ENSMUSG00000039367	Sec24c	2610204K03Rik|mKIAA0079	Sec24 related gene family, member C (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-32170954-3	chr4	32170827	32171027	+	799.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	206820.0	NM_172688	26409.0	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-85977507-2	chr18	85977407	85977607	+	867.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-417445.0	NM_001360910	246317.0	Mm.329578	NM_144946	ENSMUSG00000050321	Neto1	AI851453|Btcl1|C130005O10Rik	neuropilin (NRP) and tolloid (TLL)-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44593982-2	chr7	44593882	44594082	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008422, intron 1 of 3)	intron (NM_008422, intron 1 of 3)	3096.0	NM_001290682	16504.0	Mm.40312	NM_008422	ENSMUSG00000062785	Kcnc3	KShIIID|Kcr2-3|Kv3.3	potassium voltage gated channel, Shaw-related subfamily, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-9592972-2	chr1	9592872	9593072	+	907.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_015470, intron 3 of 4)	intron (NR_015470, intron 3 of 4)	-8295.0	NM_178399	76982.0	Mm.491098	NM_178399	ENSMUSG00000067879	3110035E14Rik	AI415019|AV164974|R75066	RIKEN cDNA 3110035E14 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-155050354-4	chr1	155050258	155050458	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32906.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-58754785-3	chr15	58754679	58754879	+	868.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	68648.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	2.4300527144569	2.46016082638359	1.2590259025112	2.56378156650215	1.59566433015352	2.2476888698417	2.0401980889983	1.66960074731925	-0.910836201339333	0.354798253517566	0.853449831367998
Merged-chr15-64085979-4	chr15	64085881	64086081	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001276462)	TTS (NM_001276462)	-25533.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	5.0477917499979	5.09333190613442	5.09113615254859	5.13160694450485	4.57854682910554	4.16184006231101	5.77147500488863	5.5833656215122	0.109525403982485	0.770164460896832	0.998431161219273
Merged-chr9-79793519-4	chr9	79793423	79793623	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133718)	promoter-TSS (NM_133718)	-93.0	NM_133718	69981.0	Mm.486324	NM_133718	ENSMUSG00000032328	Tmem30a	2010200I23Rik|AW540225|Cdc50a|D9Wsu20e	transmembrane protein 30A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-5507317-1	chr2	5507217	5507417	+	785.0	f0_balb.idr	intron (NM_001290375, intron 2 of 10)	intron (NM_001290375, intron 2 of 10)	127927.0	NR_030601	100124465.0		NR_030601	ENSMUSG00000078031	Mir466d	Mirn466d	microRNA 466d	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-86021851-4	chr10	86021751	86021951	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153195)	promoter-TSS (NM_153195)	-78.0	NM_153195	69754.0	Mm.44236	NM_153195	ENSMUSG00000001786	Fbxo7	2410015K21Rik|A230052G17Rik|AI117679|AW260462|C85118	F-box protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99652462-3	chr15	99652370	99652570	+	727.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_012025)	promoter-TSS (NM_012025)	-814.0	NM_001253809	26934.0	Mm.273804	NM_012025	ENSMUSG00000023015	Racgap1	AI227039|AI327394|Band25|GTPase|MgcRacGAP|gtl11|mKIAA1478	Rac GTPase-activating protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-168956056-3	chr2	168955938	168956138	+	973.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009564)	promoter-TSS (NM_009564)	-451.0	NM_009564	22722.0	Mm.2095	NM_009564	ENSMUSG00000027551	Zfp64	-	zinc finger protein 64	protein-coding	2.23821004356408	3.04335626114734	2.42803625838085	2.93855564125656	2.47500075809551	2.88052215603275	1.48427540547052	2.60067891550709	-0.498743072372811	0.544655662872959	0.956029256288369
Merged-chr3-88551702-1	chr3	88551602	88551802	+	957.0	f1_c57bl6.idr	TTS (NM_001362368)	TTS (NM_001362368)	1249.0	NR_155543	83409.0	Mm.41680	NM_031248	ENSMUSG00000028062	Lamtor2	2010111E04Rik|AL022628|Mapbpip|P14|Rab25|Robld3	late endosomal/lysosomal adaptor, MAPK and MTOR activator 2	protein-coding	-0.24719515898775	-0.229307399678234	-0.235123274509976	0.34629635399335	-0.246066476117417	-0.228002150233178	-0.233836926726517	0.71776788029746	1.02339461095834	0.682485800082394	1
Merged-chr11-78359737-4	chr11	78359634	78359834	+	941.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008238, intron 8 of 8)	intron (NM_008238, intron 8 of 8)	13024.0	NM_001313987	22248.0	Mm.284811	NM_011676	ENSMUSG00000002058	Unc119	D11Bhm52|HRG4|MRG4|Rg4|Rtg4|Unc119h	unc-119 lipid binding chaperone	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-95590415-1	chr10	95590315	95590515	+	623.5	f0_balb.idr	Intergenic	Intergenic	-26269.0	NM_001358996	71207.0	Mm.24397	NM_027722	ENSMUSG00000020029	Nudt4	4933436C10Rik|DIPP-2|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P	nudix (nucleoside diphosphate linked moiety X)-type motif 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135573171-4	chr5	135573064	135573264	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019577)	promoter-TSS (NM_019577)	-115.0	NM_001356630	56221.0	Mm.31505	NM_019577	ENSMUSG00000004814	Ccl24	CKb-6|MPIF-2|Scya24	chemokine (C-C motif) ligand 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-3631107-4	chr8	3631014	3631214	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011503)	promoter-TSS (NM_011503)	5.0	NM_011503	20911.0	Mm.7247	NM_011503	ENSMUSG00000004626	Stxbp2	C79054|Munc-18-2|Munc-18b|Munc18b|Sxtbp2|Sxtp2|Unc18-2|Unc18b|muSec1	syntaxin binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-134362764-3	chr4	134362646	134362846	+	886.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355493, intron 4 of 10)	intron (NM_001355493, intron 4 of 10)	9801.0	NM_001355493	56219.0	Mm.30978	NM_019578	ENSMUSG00000028838	Extl1	D430033M16Rik	exostoses (multiple)-like 1	protein-coding	3.14309007443663	2.01109939494134	3.05884763024863	3.4192385759434	2.12669722528259	1.7879405978101	2.91015304622847	1.89481731079173	-1.44877517033187	0.0739713216854462	0.410891375174802
Merged-chr8-70602967-2	chr8	70602867	70603067	+	813.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133772, intron 1 of 16)	RLTR25A|LTR|ERVK	5347.0	NM_133772	76900.0	Mm.6667	NM_133772	ENSMUSG00000070003	Ssbp4	1210002E11Rik|AW743380|Sspb4	single stranded DNA binding protein 4	protein-coding	-1.21575676353841	-1.1882771616738	-1.1995328574972	-1.2087786211754	-1.21524488394202	-1.18583800543462	-1.19698481468061	-0.540595393272118	2.74438217975722	0.425994238664144	1
Merged-chr1-133613844-4	chr1	133613753	133613953	+	773.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER96|DNA|hAT-Tip100	-3573.0	NM_009227	20643.0	Mm.249110	NM_009227	ENSMUSG00000090553	Snrpe	AL022645|C76690|SME	small nuclear ribonucleoprotein E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-108154651-2	chr3	108154551	108154751	+	826.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001305461, intron 1 of 2)	intron (NM_001305461, intron 1 of 2)	281.0	NM_001305461	229714.0	Mm.73666	NM_175470	ENSMUSG00000046793	Gpr61	-	G protein-coupled receptor 61	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-24911432-4	chr10	24911325	24911525	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_105870)	TTS (NR_105870)	761.0	NR_105870	102465545.0		NR_105870	ENSMUSG00000099181	Mir6905	Gm27879|mmu-mir-6905	microRNA 6905	ncRNA	5.19940868278306	4.69574797957371	4.08472929496023	5.71110950818039	4.24179751461851	2.03167018977594	4.11714925453384	4.75070357583953	-1.20306483138909	0.191121708243811	0.669546561020494
Merged-chr15-64103409-2	chr15	64103309	64103509	+	595.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 24 of 28)	intron (NM_001276461, intron 24 of 28)	-42961.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0.0840856297248456	0.299376647004145	0.428368565203061	0.819624591301002	0.0852479585402794	0.612065907904687	0.0979171626480807	0.0927085992121148	-1.3614527160105	0.508503794551884	1
Merged-chr3-90000055-4	chr3	89999960	90000160	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001165984)	TTS (NM_001165984)	1300.0	NR_045749	100503469.0	Mm.440636	NR_045749	ENSMUSG00000105552	Gm19710	-	predicted gene, 19710	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-90728557-2	chr16	90728457	90728657	+	581.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER5|LTR|ERV1	-1186.0	NM_025642	66578.0	Mm.180363	NM_025642	ENSMUSG00000022978	Mis18a	2610039C10Rik|2810018N07Rik	MIS18 kinetochore protein A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-80947679-2	chr15	80947579	80947779	+	700.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009634)	promoter-TSS (NM_009634)	-811.0	NM_009634	11564.0	Mm.38151	NM_009634	ENSMUSG00000022407	Adsl	Adl|Asl	adenylosuccinate lyase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-33925193-2	chr17	33925098	33925298	+	967.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025313, intron 3 of 7)	intron (NM_001025313, intron 3 of 7)	-4696.0	NM_009059	19732.0	Mm.43777	NM_009059	ENSMUSG00000041354	Rgl2	KE1.5|Rab2l|Rgt2|Rlf	ral guanine nucleotide dissociation stimulator-like 2	protein-coding	0.673357889102102	1.10588855579575	0.523496658579789	0.514432685411409	1.07210406798018	0.957618589527421	1.67629710545505	0.516025035472528	1.87591134487113	0.242261936519973	0.739349184581178
Merged-chr7-98801841-1	chr7	98801741	98801941	+	645.0	f1_c57bl6.idr	Intergenic	Intergenic	-33271.0	NM_001285794	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	2.69701684865962	2.18277955231486	1.02975751316072	1.00682923313002	2.36414202021814	1.34764206622826	1.03616240311904	2.24861382301267	-0.189688578419199	0.879932840398869	0.998431161219273
Merged-chr6-65142339-2	chr6	65142239	65142439	+	824.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_019455, intron 1 of 5)	intron (NM_019455, intron 1 of 5)	2391.0	NM_019455	54486.0	Mm.410688	NM_019455	ENSMUSG00000029919	Hpgds	H-PGDS|Ptgds2	hematopoietic prostaglandin D synthase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-38947379-2	chr6	38947279	38947479	+	931.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 1 of 12)	intron (NM_011539, intron 1 of 12)	28393.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-37154595-2	chr19	37154495	37154695	+	897.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_198300, intron 2 of 10)	ORR1F|LTR|ERVL-MaLR	-19248.0	NR_045329	319931.0	Mm.446730	NR_045329	ENSMUSG00000097591	A330032B11Rik	-	RIKEN cDNA A330032B11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-37605842-3	chr9	37605762	37605962	+	710.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001324545, exon 4 of 5)	exon (NM_001324545, exon 4 of 5)	7858.0	NM_011449	20686.0	Mm.8637	NM_011449	ENSMUSG00000001948	Spa17	Sp17	sperm autoantigenic protein 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-43611821-1	chr17	43611721	43611921	+	720.0	f1_balb.idr	intron (NM_013737, intron 11 of 11)	intron (NM_013737, intron 11 of 11)	18478.0	NM_001161366	210510.0	Mm.329058	NM_198418	ENSMUSG00000040140	Tdrd6	AB097085|Tdr2	tudor domain containing 6	protein-coding	0.966563656583713	0.626969045167189	0.607307340172444	1.34868982117122	1.68426947971179	2.35926898459276	0.611708379925818	0.594384545599015	2.01530829591155	0.184393398829786	0.659878305575594
Merged-chr15-96641627-4	chr15	96641524	96641724	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_134086, exon 1 of 16)	5' UTR (NM_134086, exon 1 of 16)	338.0	NM_134086	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-134764468-4	chr4	134764369	134764569	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145554, intron 1 of 8)	intron (NM_145554, intron 1 of 8)	3535.0	NM_145554	100017.0	Mm.27486	NM_145554	ENSMUSG00000037295	Ldlrap1	AA691260|ARH2|Arh|Arh1|FHCB1|FHCB2	low density lipoprotein receptor adaptor protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-59328041-4	chr10	59327929	59328129	+	983.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316370, intron 1 of 13)	intron (NM_001316370, intron 1 of 13)	4733.0	NM_001316370	18451.0	Mm.2212	NM_011030	ENSMUSG00000019916	P4ha1	AL022634|P4ha	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-6220320-4	chr2	6220216	6220416	+	772.450012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040333, intron 1 of 6)	intron (NR_040333, intron 1 of 6)	-7322.0	NM_024208	67856.0	Mm.38342	NM_024208	ENSMUSG00000039063	Echdc3	2310005D12Rik|AI662097	enoyl Coenzyme A hydratase domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-80879472-2	chr8	80879360	80879560	+	998.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_021356, intron 1 of 9)	CpG	1019.0	NM_021356	14388.0	Mm.277409	NM_021356	ENSMUSG00000031714	Gab1	AA408973|AW107238	growth factor receptor bound protein 2-associated protein 1	protein-coding	3.4400404735815	2.71460769732807	2.76839248829887	3.95889743296376	2.80303863729335	3.99859638663698	3.26571268761822	3.76209118500541	0.302283870483603	0.624413636849046	0.980630817450287
Merged-chr4-55651264-4	chr4	55651156	55651356	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-118781.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	6.74182652282971	6.75285762694497	6.65066853197344	6.82535682659885	6.96178425997464	6.83279061929596	7.2465233834189	6.65219937335002	0.207122979130175	0.262760281554692	0.764120750149349
Merged-chr2-71353843-4	chr2	71353723	71353923	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172436, intron 2 of 17)	intron (NM_172436, intron 2 of 17)	13731.0	NM_172436	78830.0	Mm.30928	NM_172436	ENSMUSG00000027010	Slc25a12	2610002D09Rik|AI839531|B230107K20Rik|BB129864	solute carrier family 25 (mitochondrial carrier, Aralar), member 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-4493952-4	chr8	4493833	4494033	+	953.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026058, intron 1 of 10)	intron (NM_026058, intron 1 of 10)	528.0	NM_026058	67260.0	Mm.35511	NM_026058	ENSMUSG00000008206	Cers4	2900019C14Rik|Lass4|Trh1	ceramide synthase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120608014-4	chr8	120607886	120608086	+	886.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_197988)	TTS (NM_197988)	-18911.0	NM_178856	272551.0	Mm.275910	NM_178856	ENSMUSG00000031821	Gins2	2210013I18Rik|4833427B12Rik|AI323585|Pfs2	GINS complex subunit 2 (Psf2 homolog)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-99660028-2	chr2	99659928	99660128	+	741.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3C|LINE|L1	-1964720.0	NM_009020	19374.0	Mm.4988	NM_009020	ENSMUSG00000032864	Rag2	Rag-2	recombination activating gene 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-60825538-2	chr15	60825438	60825638	+	589.083374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162926)	promoter-TSS (NM_001162926)	-458.0	NM_001162926	399603.0	Mm.411968	NM_207269	ENSMUSG00000072568	Fam84b	BF642811|D330050I23Rik	family with sequence similarity 84, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-38003405-4	chr18	38003305	38003505	+	828.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4436.0	NM_001205336	106952.0	Mm.247642	NM_139206	ENSMUSG00000024451	Arap3	Centd3|Drag1|E030006K04Rik|cnt-d3	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3	protein-coding	2.62805087613173	2.59592874985365	1.80848747601612	3.09896423305413	2.82056986784644	3.31610620622735	2.6539675743127	2.4504344350365	0.445247128682911	0.555349650426757	0.959914380895535
Merged-chr7-99556009-2	chr7	99555909	99556109	+	737.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178220, intron 1 of 14)	intron (NM_178220, intron 1 of 14)	3740.0	NR_029760	723840.0		NR_029760	ENSMUSG00000065571	Mir326	Mirn326|mir-326|mmu-mir-326	microRNA 326	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-30869602-4	chr5	30869504	30869704	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144525)	promoter-TSS (NM_144525)	25.0	NM_144525	68796.0	Mm.205169	NM_144525	ENSMUSG00000038828	Tmem214	1110039B18Rik|4921530J21Rik|AI841294|AU018742|C76280	transmembrane protein 214	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-53317311-2	chr19	53317211	53317411	+	778.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360348, intron 1 of 5)	intron (NM_001360348, intron 1 of 5)	5866.0	NM_001360348	17859.0	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-83850895-7	chr17	83850718	83850918	+	915.535706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_155490)	TTS (NR_155490)	3600.0	NR_155490	320021.0	Mm.379475	NR_155490		C430042M11Rik	-	RIKEN cDNA C430042M11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-80194086-3	chr18	80193986	80194186	+	908.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_131039)	TTS (NR_131039)	6533.0	NM_199197	68731.0	Mm.186936	NM_199197	ENSMUSG00000024570	Rbfa	1110032A13Rik|AI595940	ribosome binding factor A	protein-coding	2.09028146610906	1.63638615165937	2.93437244293939	2.43203925767354	1.98228609781823	2.71873761905777	2.71847197596639	1.30027526565865	-0.122777660559697	0.897314647394655	0.998431161219273
Merged-chr6-88829789-4	chr6	88829679	88829879	+	988.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	12156.0	NM_001362152	80283.0	Mm.166858	NM_030251	ENSMUSG00000030083	Abtb1	AI847549|BC003234|BPOZ|EF1ABP	ankyrin repeat and BTB (POZ) domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-9110411-4	chr19	9110342	9110542	+	943.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22486.0	NM_011681	22287.0	Mm.2258	NM_011681	ENSMUSG00000024653	Scgb1a1	CC10|CC16|CCSP|PCB-BP|UG|UGB|Utg	secretoglobin, family 1A, member 1 (uteroglobin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-163838252-4	chr2	163838164	163838364	+	920.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15486.0	NM_001030292	241769.0	Mm.295337	NM_001030292	ENSMUSG00000035238	Kcnk15	KCNK11|KCNK14|KT3.3|TASK5	potassium channel, subfamily K, member 15	protein-coding	0.54009431012793	0.397722095023079	0.387045419967426	1.53552987786355	0.826319312860364	0.400104932025942	0.389415420005368	1.22558960026886	-0.308720063007278	0.862059549968301	0.998431161219273
Merged-chr19-4111719-2	chr19	4111619	4111819	+	675.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008851, intron 18 of 22)	intron (NM_008851, intron 18 of 22)	9856.0	NM_001276284	11632.0	Mm.10433	NM_016666	ENSMUSG00000024847	Aip	AA408703|AW476050|Ara9|D19Bwg1412e|Fkbp16|Xap2	aryl-hydrocarbon receptor-interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-5939534-4	chr13	5939422	5939622	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	78033.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-126533524-4	chr4	126533343	126533543	+	929.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153177)	promoter-TSS (NM_153177)	15.0	NM_153177	76850.0	Mm.86705	NM_153177	ENSMUSG00000042500	Ago4	5730550L01Rik|AI481660|Eif2c4	argonaute RISC catalytic subunit 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191198860-2	chr1	191198760	191198960	+	809.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR17B_Mm|LTR|ERVK	-15527.0	NM_007498	11910.0	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-83631444-4	chr17	83631327	83631527	+	815.729187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_153512, exon 1 of 2)	exon (NM_153512, exon 1 of 2)	468.0	NM_153512	225030.0	Mm.223506	NM_153512	ENSMUSG00000045053	Kcng3	KV6.3|Kv10.1a|Kv10.1b	potassium voltage-gated channel, subfamily G, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70580204-2	chr11	70580104	70580304	+	799.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_016713, intron 1 of 30)	PB1|SINE|Alu	17323.0	NM_016713	50932.0	Mm.42967	NM_016713	ENSMUSG00000020827	Mink1	B55|MINK|Map4k6|Ysk2	misshapen-like kinase 1 (zebrafish)	protein-coding	1.57037223525625	1.06170646661808	1.03574243987831	1.65749090289437	1.11579608635024	1.06753996945925	0.863776604305181	1.50393439890528	-0.90772563637884	0.492775081016338	0.935679785535167
Merged-chr13-37965527-5	chr13	37965345	37965545	+	951.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28763.0	NM_025965	107513.0	Mm.426670	NM_025965	ENSMUSG00000021427	Ssr1	2510001K09Rik|6330400D04|AI159733|AI452176|SSR|TRAPA	signal sequence receptor, alpha	protein-coding	2.47601120073916	2.96229526528149	1.41282155011719	2.00617222862741	2.18847036983758	2.69721250088603	2.37356422279191	2.87442660182118	0.45299007954709	0.603662994791102	0.973589491466885
Merged-chr8-111539978-4	chr8	111539861	111540061	+	924.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168623, intron 1 of 4)	MIRc|SINE|MIR	1618.0	NM_001168623	170737.0	Mm.271578	NM_133206	ENSMUSG00000033545	Znrf1	B830022L21Rik|Rnf42|Zrfp1|nin283	zinc and ring finger 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-95829379-2	chr11	95829279	95829479	+	922.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001163464)	TTS (NM_001163464)	4879.0	NM_153104	237928.0	Mm.133075	NM_153104	ENSMUSG00000050860	Phospho1	D11Moh36|Phospo1	phosphatase, orphan 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-101922470-1	chr2	101922370	101922570	+	865.6666869999999	f0_balb.idr	Intergenic	Intergenic	36208.0	NM_029635	76501.0	Mm.330424	NM_029635	ENSMUSG00000027163	Commd9	1810029F08Rik|AA409293	COMM domain containing 9	protein-coding	2.08704685487511	2.20301063549601	2.26083131918466	1.33540109891474	2.62934884621694	2.47875124150468	1.99650267786955	2.68651586063616	1.08387915118208	0.227712230146605	0.720995250870592
Merged-chr17-56926995-4	chr17	56926910	56927110	+	857.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_022328, exon 2 of 12)	exon (NM_022328, exon 2 of 12)	8378.0	NM_022328	64144.0	Mm.148748	NM_022328	ENSMUSG00000024212	Mllt1	AA407901|BAM11|ENL|LTG19	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-104592214-2	chr2	104592114	104592314	+	575.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037326, intron 1 of 1)	B1_Mur1|SINE|Alu	1730.0	NM_001037326	228410.0	Mm.259876	NM_145529	ENSMUSG00000027176	Cstf3	4732468G05Rik|C79532|CstF-77	cleavage stimulation factor, 3' pre-RNA, subunit 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-128722234-4	chr1	128722146	128722346	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-129947.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-136170289-4	chr1	136170187	136170387	+	959.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039472, intron 30 of 34)	intron (NM_001039472, intron 30 of 34)	38897.0	NR_153829	16565.0	Mm.276135	NM_019962	ENSMUSG00000041642	Kif21b	2610511N21Rik|mKIAA0449	kinesin family member 21B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-8176548-2	chr14	8176448	8176648	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-3556.0	NM_024221	68263.0	Mm.301527	NM_024221	ENSMUSG00000021748	Pdhb	2610103L06Rik|AL024199|C81408	pyruvate dehydrogenase (lipoamide) beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-106947792-2	chr13	106947692	106947892	+	566.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025447, intron 2 of 11)	B1F|SINE|Alu	663.0	NM_025447	66254.0	Mm.9563	NM_025447	ENSMUSG00000021692	Dimt1	1500031M22Rik|AV111347|Dimt1l	DIM1 dimethyladenosine transferase 1-like (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-123053885-2	chr6	123053785	123053985	+	668.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027218, intron 2 of 4)	intron (NM_027218, intron 2 of 4)	3923.0	NM_001190310	69810.0	Mm.333374	NM_027218	ENSMUSG00000030147	Clec4b1	1810046I24Rik|Aplra2|Clec4b|DCAR|DCARbeta|Dcar2	C-type lectin domain family 4, member b1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166091768-2	chr2	166091668	166091868	+	849.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252579, intron 5 of 20)	intron (NM_001252579, intron 5 of 20)	63517.0	NM_001355619	72043.0	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85437271-4	chr12	85437159	85437359	+	998.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36631.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-124025428-1	chr9	124025328	124025528	+	600.0	f0_balb.idr	intron (NM_009914, intron 1 of 1)	intron (NM_009914, intron 1 of 1)	3457.0	NM_009914	12771.0	Mm.57050	NM_009914	ENSMUSG00000035448	Ccr3	CC-CKR3|CKR3|Cmkbr1l2|Cmkbr3	chemokine (C-C motif) receptor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-53337591-2	chr18	53337491	53337691	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029394, intron 2 of 6)	L1_Mus2|LINE|L1	80416.0	NM_008908	19038.0	Mm.4587	NM_008908	ENSMUSG00000024538	Ppic	CyP-20c	peptidylprolyl isomerase C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-120453277-4	chr14	120453162	120453362	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-25199.0	NM_029519	76108.0	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-55024421-4	chr13	55024305	55024505	+	983.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3020.0	NM_001033245	212032.0	Mm.267479	NM_001033245	ENSMUSG00000025877	Hk3	HK III|HK-III	hexokinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-32138530-3	chr12	32138446	32138646	+	695.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	69792.0	NM_001146201	30955.0	Mm.101369	NM_020272	ENSMUSG00000020573	Pik3cg	5830428L06Rik|PI3Kgamma|p110gamma	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding	0.203213255158402	0.849431633651968	0.217014022974987	0.211833908142281	0.699262136098274	0.860772852094699	0.403962103632826	0.212739535654102	1.00658777930247	0.608238873701757	1
Merged-chr3-104780907-6	chr3	104780784	104780984	+	827.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027982)	promoter-TSS (NM_027982)	-172.0	NM_027982	71887.0	Mm.379204	NM_027982	ENSMUSG00000002228	Ppm1j	2310008J22Rik|PP2Czeta|Ppp2cz	protein phosphatase 1J	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-25331242-4	chr18	25331142	25331342	+	869.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033532, intron 6 of 10)	Lx2|LINE|L1	162222.0	NM_001033532	225289.0	Mm.391081	NM_001033532	ENSMUSG00000033632	AW554918	4921538P22|AI461742|Kiaa1328|mKIAA1328	expressed sequence AW554918	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-8422761-4	chr5	8422660	8422860	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289595)	promoter-TSS (NM_001289595)	-44.0	NM_001190717	27214.0	Mm.292470	NM_013726	ENSMUSG00000002297	Dbf4	AA545217|Ask	DBF4 zinc finger	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-129626119-4	chr6	129626092	129626292	+	888.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2328.0	NM_001286018	27007.0	Mm.8217	NM_033078	ENSMUSG00000030149	Klrk1	D6H12S2489E|NKG2-D|Nkg2d	killer cell lectin-like receptor subfamily K, member 1	protein-coding	2.71347354702068	4.14217146667103	3.16088469675619	2.86604437484009	2.62365470696458	3.2950282305249	3.08502154180381	3.17829421654704	-0.470893422808034	0.467540237264469	0.923770669682091
Merged-chr16-91452748-4	chr16	91452657	91452857	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12347.0	NR_077219	100503120.0	Mm.387130	NR_077219	ENSMUSG00000084866	A930006K02Rik	-	RIKEN cDNA A930006K02 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-50498535-4	chr2	50498437	50498637	+	983.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13C2|LTR|ERVK	143512.0	NR_154590	102634280.0		NR_154590		Gm48908	-	predicted gene 48908	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-24386649-3	chr8	24386547	24386747	+	870.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52299.0	NM_026931	69068.0	Mm.25775	NM_026931	ENSMUSG00000056313	Tcim	1110065B09Rik|1810011O10Rik|AW121743|AW321058	transcriptional and immune response regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4754295-4	chr16	4754193	4754393	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010443, intron 1 of 5)	intron (NM_010443, intron 1 of 5)	-2653.0	NM_001357050	15369.0	Mm.272866	NM_010443	ENSMUSG00000004070	Hmox2	HO-2|HO2	heme oxygenase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34136747-2	chr17	34136647	34136847	+	931.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360530, intron 2 of 5)	intron (NM_001360530, intron 2 of 5)	-8669.0	NM_010388	15000.0	Mm.195060	NM_010388	ENSMUSG00000037548	H2-DMb2	H-2Mb2|H2-Mb2	histocompatibility 2, class II, locus Mb2	protein-coding	0.34140203996889	1.00666413286104	1.42356284002309	0.35890943637117	0.344046231660484	0.385051741317143	1.61590228599728	0.360716452425956	-0.166168251193915	0.959186912338459	0.998431161219273
Merged-chr14-121598854-3	chr14	121598730	121598930	+	820.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347596, intron 34 of 52)	intron (NM_001347596, intron 34 of 52)	-93576.0	NM_053079	56643.0	Mm.155618	NM_053079	ENSMUSG00000025557	Slc15a1	D630032F02|PECT1|PEPT1	solute carrier family 15 (oligopeptide transporter), member 1	protein-coding	2.47844394356052	2.88634752903048	2.95472173948431	1.35064533101229	2.7455583264791	2.45768472671906	1.39225149766735	2.72187374919648	-0.244384966273622	0.795974069206557	0.998431161219273
Merged-chr11-77317928-3	chr11	77317835	77318035	+	744.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177710, intron 1 of 14)	MLT2B3|LTR|ERVL	-30345.0	NM_001291190	237860.0	Mm.440381	NM_177710	ENSMUSG00000037926	Ssh2	SSH-2|SSH-2L|mSSH-2L	slingshot protein phosphatase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-24713911-2	chr12	24713811	24714011	+	942.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009104, exon 10 of 10)	3' UTR (NM_009104, exon 10 of 10)	5657.0	NM_009104	20135.0	Mm.99	NM_009104	ENSMUSG00000020649	Rrm2	AA407299|R2	ribonucleotide reductase M2	protein-coding	-0.289851946104314	-0.737899168765768	-0.740932179010924	-0.743264539078787	-0.280173431323445	-0.737213951634147	-0.740264187498491	-0.742857569821679	0.0418983010157508	0.98887086484455	1
Merged-chr7-27472911-4	chr7	27472822	27473022	+	994.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133210)	promoter-TSS (NM_133210)	-918.0	NM_133210	170742.0	Mm.200120	NM_133210	ENSMUSG00000055200	Sertad3	AW124805|D1Mgi51|Rbt1|Sei3	SERTA domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-40322478-4	chr9	40322379	40322579	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151734, intron 3 of 18)	intron (NR_151734, intron 3 of 18)	-1156.0	NM_001357622	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59828617-4	chr15	59828535	59828735	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33676.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-103279719-4	chr3	103279626	103279826	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_053170, exon 1 of 20)	5' UTR (NM_053170, exon 1 of 20)	433.0	NM_053170	94093.0	Mm.195036	NM_053170	ENSMUSG00000033014	Trim33	8030451N04Rik|AI413936|Ecto|Tif1g	tripartite motif-containing 33	protein-coding	-0.294083384950798	-0.277963382818132	0.430175288204581	-0.287290034214969	-0.293070061983337	-0.276782190008417	0.44311158986884	-0.286577643912737	0.0410571026119648	0.987250810110592	1
Merged-chr2-36230014-1	chr2	36229914	36230114	+	566.0	f0_balb.idr	promoter-TSS (NM_008969)	promoter-TSS (NM_008969)	-412.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5118365-4	chr19	5118240	5118440	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008451)	promoter-TSS (NM_008451)	68.0	NR_045528	16594.0	Mm.271648	NM_008451	ENSMUSG00000024862	Klc2	8030455F02Rik|AW212649|KLC 2|KLC-2	kinesin light chain 2	protein-coding	2.58089509765346	1.54528679242947	2.40352309567866	3.03901009896375	3.44882696928249	1.86677256312441	3.67153681910174	4.04041208319029	1.6305526280197	0.0373790085747574	0.27492178947025
Merged-chr9-124282219-4	chr9	124282113	124282313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30481.0	NM_001243118	630836.0	Mm.458553	NM_001243117	ENSMUSG00000074829	2010315B03Rik	BC029716	RIKEN cDNA 2010315B03 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-77271067-4	chr10	77270971	77271171	+	937.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11771.0	NM_030262	80294.0	Mm.203556	NM_030262	ENSMUSG00000020260	Pofut2	2310011G23Rik|AI256847|BC003494|C21orf80|FUT13	protein O-fucosyltransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-46522244-2	chr17	46522144	46522344	+	797.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081335, exon 19 of 41)	exon (NM_001081335, exon 19 of 41)	24144.0	NM_001081335	78309.0	Mm.329076	NM_001081335	ENSMUSG00000040327	Cul9	1810035I07Rik|Cul-9|Parc|mKIAA0708	cullin 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-6357741-3	chr7	6357640	6357840	+	854.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	-5568.0	NM_001025163	330463.0	Mm.136456	NM_177888	ENSMUSG00000055150	Zfp78	A330079D15|KRAB12|Zfp77	zinc finger protein 78	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166713051-4	chr2	166712929	166713129	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	803.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105934844-2	chr8	105934744	105934944	+	689.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023182)	promoter-TSS (NM_023182)	-982.0	NM_023182	109660.0	Mm.2745	NM_023182	ENSMUSG00000031896	Ctrl	0910001G08Rik|1810004D15Rik|AV005227|Ctra-1|Ctra1|chymopasin|mFLJ00366	chymotrypsin-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-147431006-2	chr4	147430906	147431106	+	759.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039209, intron 1 of 2)	MamRep1151|LTR?|LTR?	-122271.0	NM_001014397	433804.0	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154	zinc finger protein 985	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-87469796-2	chr11	87469696	87469896	+	854.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199293, intron 2 of 30)	intron (NM_001199293, intron 2 of 30)	42205.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153164631-6	chr2	153164529	153164729	+	817.472229	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133847, intron 1 of 17)	intron (NM_133847, intron 1 of 17)	3328.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-64222456-2	chr15	64222356	64222556	+	711.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 3 of 28)	intron (NM_001276461, intron 3 of 28)	90217.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-21986977-2	chr6	21986877	21987077	+	670.333313	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081351, exon 1 of 22)	exon (NM_001081351, exon 1 of 22)	1067.0	NM_001081351	214642.0	Mm.221404	NM_001081351	ENSMUSG00000062980	Cped1	6720481P07|A430107O13Rik|AI552584	cadherin-like and PC-esterase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-88509211-4	chr15	88509116	88509316	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-91086.0	NM_027306	70073.0	Mm.45306	NM_027306	ENSMUSG00000054117	Zdhhc25	1700030J15Rik	zinc finger, DHHC domain containing 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-37047707-2	chr9	37047607	37047807	+	983.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001029838, intron 2 of 12)	intron (NM_001029838, intron 2 of 12)	99615.0	NM_148950	208076.0	Mm.260335	NM_148950	ENSMUSG00000035934	Pknox2	D230005H23Rik|Prep2	Pbx/knotted 1 homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-63467805-3	chr14	63467701	63467901	+	662.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31407.0	NM_177628	219148.0	Mm.37882	NM_177628	ENSMUSG00000035095	Fam167a	A030013D21	family with sequence similarity 167, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-12427762-3	chr4	12427679	12427879	+	833.366638	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-255764.0	NM_026558	68099.0	Mm.25340	NM_026558	ENSMUSG00000028218	Fam92a	6720467C03Rik|Fam92a1	family with sequence similarity 92, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30590097-2	chr7	30589997	30590197	+	847.833374	f1_balb.idr|f1_c57bl6.idr	TTS (NR_106134)	TTS (NR_106134)	717.0	NR_106134	102465774.0		NR_106134	ENSMUSG00000098553	Mir3569	Gm27279|mmu-mir-3569	microRNA 3569	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-99616000-4	chr10	99615902	99616102	+	939.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038019, intron 1 of 2)	intron (NR_038019, intron 1 of 2)	6831.0	NR_038019	100504202.0	Mm.403801	NR_038019	ENSMUSG00000111962	Gm20110	-	predicted gene, 20110	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-147815482-2	chr4	147815384	147815584	+	844.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5696.0	NM_001127189	100041677.0	Mm.327194	NM_001127189	ENSMUSG00000078495	Zfp984	Gm13157	zinc finger protein 984	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-77193441-4	chr5	77193339	77193539	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11B|LTR|ERVK	17766.0	NM_001289767	69982.0	Mm.46106	NM_183284	ENSMUSG00000053030	Spink2	1700007F22Rik|AV038945|HUSI-II	serine peptidase inhibitor, Kazal type 2	protein-coding	5.52627662515971	5.36835841420062	5.33417551240492	5.3935581868125	3.72009862159608	4.65393559625125	4.32964887008523	3.92193825741903	-1.48427753295652	1.784163898589e-05	0.000743277724141347
Merged-chr9-7734538-4	chr9	7734472	7734672	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29505.0	NM_133739	71929.0	Mm.283293	NM_133739	ENSMUSG00000050912	Tmem123	2310075C12Rik	transmembrane protein 123	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-66179152-4	chr14	66179055	66179255	+	991.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 5 of 30)	intron (NM_001162366, intron 5 of 30)	34669.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-172446222-2	chr2	172446122	172446322	+	555.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025542, intron 3 of 8)	B4A|SINE|B4	5644.0	NM_025542	66404.0	Mm.25157	NM_025542	ENSMUSG00000027502	Rtf2	1700067C04Rik|2410001C21Rik|5730427M17Rik|AA589417|Rtfdc1	replication termination factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102398664-4	chr12	102398559	102398759	+	707.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011175, intron 10 of 13)	intron (NM_011175, intron 10 of 13)	41154.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-13907702-4	chr8	13907608	13907808	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347316)	promoter-TSS (NM_001347316)	-31.0	NM_025785	66822.0	Mm.37950	NM_025785	ENSMUSG00000038365	Fbxo25	9130015I06Rik|AI649137|Fbx25	F-box protein 25	protein-coding	1.95256845632648	0.858339095198469	0.840101158519712	1.73635491122272	1.97155968392847	0.862380845313729	0.844168175306617	1.74690522522483	0.0364093227478638	0.980211841061869	0.998431161219273
Merged-chr6-137387825-2	chr6	137387725	137387925	+	716.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011216, intron 7 of 26)	intron (NM_011216, intron 7 of 26)	-22896.0	NM_001164402	19277.0	Mm.186361	NM_011216	ENSMUSG00000030223	Ptpro	D28|GLEPP1|PTPBK|PTPROt|PTPU2|PTPoc|PTPphi|Ptpn15|R-PTP-O	protein tyrosine phosphatase, receptor type, O	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-27058455-4	chr8	27058383	27058583	+	968.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15928.0	NM_054057	114863.0	Mm.277501	NM_054057	ENSMUSG00000031485	Plpbp	1700024N20Rik|2200002F22Rik|Prosc	pyridoxal phosphate binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-128725054-2	chr8	128724954	128725154	+	897.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_010578, intron 14 of 15)	intron (NM_010578, intron 14 of 15)	39400.0	NM_010578	16412.0	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-41413330-2	chr7	41413230	41413430	+	589.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177764, intron 5 of 5)	L1Md_A|LINE|L1	-19951.0	NM_001199330	233168.0	Mm.379390	NM_183167	ENSMUSG00000056383	AI987944	-	expressed sequence AI987944	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-79002621-3	chr12	79002508	79002708	+	797.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178745, intron 1 of 2)	Lx9|LINE|L1	4669.0	NM_178745	268567.0	Mm.341747	NM_178745	ENSMUSG00000046157	Tmem229b	6330442E10Rik|9830138K24|AU019070	transmembrane protein 229B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33951094-4	chr16	33951010	33951210	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15928.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-119540451-4	chr4	119540367	119540567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290696, intron 1 of 11)	intron (NM_001290696, intron 1 of 11)	806.0	NM_172699	230700.0	Mm.259227	NM_172699	ENSMUSG00000032998	Foxj3	C330039G02Rik|Fhd6	forkhead box J3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115974794-2	chr11	115974694	115974894	+	921.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133663)	promoter-TSS (NM_133663)	69.0	NM_133663	192897.0	Mm.213873	NM_133663	ENSMUSG00000020758	Itgb4	AA407042|C230078O20|CD104	integrin beta 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-65377317-3	chr16	65377218	65377418	+	644.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-143311.0	NM_008849	18736.0	Mm.355440	NM_008849	ENSMUSG00000004842	Pou1f1	GHF-1|Hmp1|Pit-1|Pit1|Pit1-rs1|dw|dwarf	POU domain, class 1, transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135940606-2	chr4	135940506	135940706	+	617.166687	f1_balb.idr|f1_c57bl6.idr	TTS (NM_024243)	TTS (NM_024243)	-5842.0	NM_008254	15356.0	Mm.482102	NM_008254	ENSMUSG00000028672	Hmgcl	AW476067|HL	3-hydroxy-3-methylglutaryl-Coenzyme A lyase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-138506876-3	chr3	138506798	138506998	+	576.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17516.0	NM_175224	75624.0	Mm.26833	NM_175224	ENSMUSG00000005813	Metap1	1700029C17Rik|AW047992|mKIAA0094	methionyl aminopeptidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-94569079-3	chr16	94568977	94569177	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1129.0	NM_007890	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-24950427-4	chr10	24950307	24950507	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22937.0	NM_007482	11846.0	Mm.154144	NM_007482	ENSMUSG00000019987	Arg1	AI|AI256583|Arg-1|PGIF	arginase, liver	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-61730137-1	chr11	61730037	61730237	+	611.0	f1_c57bl6.idr	3' UTR (NM_001164242, exon 11 of 11)	3' UTR (NM_001164242, exon 11 of 11)	-9338.0	NM_001033227	109342.0	Mm.441070	NM_001033227	ENSMUSG00000042371	Slc5a10	C330021F16Rik|SGLT5	solute carrier family 5 (sodium/glucose cotransporter), member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-86128452-4	chr17	86128350	86128550	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030133, intron 5 of 20)	L1MC4|LINE|L1	16725.0	NM_030133	78586.0	Mm.146236	NM_030133	ENSMUSG00000024135	Srbd1	AI461933|C85414|D530025C17Rik	S1 RNA binding domain 1	protein-coding	3.77565054723735	4.64839537694293	3.96133711883118	5.17804866729821	5.20277208631371	5.40313283223498	5.34258931749031	6.09438096858843	1.24561395132975	0.00119572631181858	0.022416131701874
Merged-chr1-138843293-2	chr1	138843193	138843393	+	856.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001042577)	promoter-TSS (NM_001042577)	-849.0	NM_001025565	16876.0	Mm.250732	NM_010714	ENSMUSG00000019230	Lhx9	3110009O07Rik|BB104635|LH2B	LIM homeobox protein 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-170576563-4	chr1	170576447	170576647	+	906.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109985, intron 1 of 9)	intron (NM_001109985, intron 1 of 9)	13302.0	NM_001109985	70729.0	Mm.409310	NM_027528	ENSMUSG00000038473	Nos1ap	6330408P19Rik|Capon	nitric oxide synthase 1 (neuronal) adaptor protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120717959-2	chr8	120717859	120718059	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18399.0	NM_008320	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-98830130-2	chr15	98830030	98830230	+	764.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016781, intron 1 of 11)	intron (NM_016781, intron 1 of 11)	1378.0	NM_016781	19082.0	Mm.6670	NM_016781	ENSMUSG00000067713	Prkag1	AA571379|BB036179|Prkaac	protein kinase, AMP-activated, gamma 1 non-catalytic subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-29248518-2	chr19	29248418	29248618	+	689.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-3285.0	NM_001048177	16452.0	Mm.275839	NM_008413	ENSMUSG00000024789	Jak2	Fd17	Janus kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-12855234-2	chr11	12855133	12855333	+	583.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-390273.0	NM_001282993	12808.0	Mm.22847	NM_172496	ENSMUSG00000020173	Cobl	-	cordon-bleu WH2 repeat	protein-coding	0.105132519635476	0.664356238398013	0.113966000531154	0.380923690954331	0.233171151199119	0.673876298481465	0.114926635839227	0.111204965783948	-0.230393392038913	0.91128119356141	1
Merged-chr2-10049391-6	chr2	10049285	10049485	+	837.138916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027748)	promoter-TSS (NM_027748)	-776.0	NM_027748	209361.0	Mm.86343	NM_027748	ENSMUSG00000025782	Taf3	140kDa|4933439M23Rik|AW539625|TAF140|TAFII-140|TAFII140|mTAFII140	TATA-box binding protein associated factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-79144357-3	chr12	79144274	79144474	+	718.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009705, intron 2 of 7)	intron (NM_009705, intron 2 of 7)	13586.0	NM_009705	11847.0	Mm.3506	NM_009705	ENSMUSG00000021125	Arg2	AII|AU022422	arginase type II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-25551237-6	chr2	25551079	25551279	+	749.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4239.0	NM_009422	22030.0	Mm.3399	NM_009422	ENSMUSG00000026942	Traf2	AI325259	TNF receptor-associated factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-37376298-4	chr19	37376220	37376420	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010615)	promoter-TSS (NM_010615)	-83.0	NM_010615	16551.0	Mm.42203	NM_010615	ENSMUSG00000012443	Kif11	Eg5|Kif8|Kifl1|Knsl1	kinesin family member 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-127151784-4	chr6	127151667	127151867	+	984.1785890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009829)	promoter-TSS (NM_009829)	-719.0	NM_009829	12444.0	Mm.333406	NM_009829	ENSMUSG00000000184	Ccnd2	2600016F06Rik|AI256817|BF642806|C86853|Vin-1|Vin1|cD2	cyclin D2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-119895758-2	chr14	119895658	119895858	+	779.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	146531.0	NR_045621	75432.0	Mm.443277	NR_045621	ENSMUSG00000100274	1700006F04Rik	-	RIKEN cDNA 1700006F04 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-34089616-4	chr10	34089530	34089730	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162937, intron 4 of 6)	intron (NM_001162937, intron 4 of 6)	6889.0	NM_178908	103511.0	Mm.66334	NM_178908	ENSMUSG00000049872	Fam26e	BB146404|Calhm5	family with sequence similarity 26, member E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-138138011-3	chr1	138137917	138138117	+	817.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001268286, intron 2 of 28)	intron (NM_001268286, intron 2 of 28)	37109.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-8747649-2	chr19	8747549	8747749	+	802.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019829, intron 4 of 9)	B2_Mm2|SINE|B2	4678.0	NR_105958	102465599.0		NR_105958	ENSMUSG00000098844	Mir6992	Gm27906|mmu-mir-6992	microRNA 6992	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-57359869-4	chr17	57359727	57359927	+	957.427734	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355722, intron 1 of 22)	intron (NM_001355722, intron 1 of 22)	1141.0	NM_010130	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-16580240-3	chr12	16580180	16580380	+	791.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355598, intron 2 of 20)	intron (NM_001355598, intron 2 of 20)	9490.0	NM_015763	14245.0	Mm.153625	NM_015763	ENSMUSG00000020593	Lpin1	Lipin1|fld	lipin 1	protein-coding	0.97796756307511	1.76601441100957	1.82201023323354	1.20852883821427	1.32618844896673	2.01722520569582	1.58233787315497	1.77726056362618	0.661384675606198	0.571076160862569	0.962868434236805
Merged-chr3-69223783-3	chr3	69223656	69223856	+	919.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_027843)	TTS (NM_027843)	1337.0	NM_027843	71619.0	Mm.98122	NM_027843	ENSMUSG00000098207	Arl14	9130014L17Rik|Arf7	ADP-ribosylation factor-like 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-37498210-4	chr13	37498137	37498337	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	152892.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	4.88966576191167	4.88721377375948	5.6463478793518	4.69478116235305	6.19487588832073	6.22707526534366	6.61722155871953	5.53609272686888	1.25252168919196	4.7248283271146e-05	0.00166730853731532
Merged-chr14-34502032-2	chr14	34501932	34502132	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009758, intron 1 of 12)	CpG	514.0	NM_009758	12166.0	Mm.237825	NM_009758	ENSMUSG00000021796	Bmpr1a	1110037I22Rik|ALK-3|ALK3|AU045487|BMPR-1A|BMPR-IA|Bmpr|SKR5	bone morphogenetic protein receptor, type 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-112736290-2	chr12	112736190	112736390	+	578.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001024602, exon 9 of 19)	exon (NM_001024602, exon 9 of 19)	2968.0	NR_105905	102466989.0		NR_105905	ENSMUSG00000099165	Mir6940	Gm27655|mmu-mir-6940	microRNA 6940	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-105648564-3	chr9	105648482	105648682	+	856.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081309, intron 2 of 19)	intron (NM_001081309, intron 2 of 19)	5587.0	NM_001081309	75669.0	Mm.274830	NM_029380	ENSMUSG00000032571	Pik3r4	2210010O15Rik|C730038E05Rik|C85833|D9Ertd418e|Vps15|p150	phosphoinositide-3-kinase regulatory subunit 4	protein-coding	1.03161317045688	1.13389971719419	2.06772241134268	1.07658053268856	2.3034853530923	2.7802803520266	2.60165630421035	2.01464251801686	2.83387175196953	0.0115788883499367	0.120593318075122
Merged-chr10-81138339-4	chr10	81138224	81138424	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010731, intron 1 of 2)	intron (NM_010731, intron 1 of 2)	2053.0	NM_010731	16969.0	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75429200-4	chr11	75429101	75429301	+	982.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6578.0	NM_011340	20317.0	Mm.2044	NM_011340	ENSMUSG00000000753	Serpinf1	AI195227|EPC-1|Pedf|Pedfl|Sdf3	serine (or cysteine) peptidase inhibitor, clade F, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-97311627-5	chr7	97311433	97311633	+	783.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001177412, exon 9 of 10)	exon (NM_001177412, exon 9 of 10)	14431.0	NM_001177412	244144.0	Mm.297541	NM_001177412	ENSMUSG00000035713	Usp35	Gm1088|Gm493	ubiquitin specific peptidase 35	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-122763216-4	chr2	122763122	122763322	+	975.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2137.0	NM_001162503	59010.0	Mm.28986	NM_021507	ENSMUSG00000005803	Sqor	0610039J17Rik|4930557M22Rik|Sqrdl	sulfide quinone oxidoreductase	protein-coding	2.45730492560843	2.75092118194231	2.13416625600767	2.20024817907323	1.99233138492487	1.68160177637222	2.27903773675381	2.21117781444902	-0.844717365920684	0.325676081925335	0.827782420413875
Merged-chr3-89339569-4	chr3	89339465	89339665	+	913.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009614)	TTS (NM_009614)	-1537.0	NM_007910	13639.0	Mm.16332	NM_007910	ENSMUSG00000028040	Efna4	EFL-4|Epl4|LERK-4	ephrin A4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-100686897-1	chr3	100686797	100686997	+	646.0	f1_balb.idr	Intergenic	Intergenic	-1424.0	NM_010763	17156.0	Mm.271617	NM_010763	ENSMUSG00000008763	Man1a2	AI428775|AI528764|AI854422|Man1b|PCR2	mannosidase, alpha, class 1A, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-61197839-2	chr10	61197739	61197939	+	552.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001081127, exon 22 of 22)	3' UTR (NM_001081127, exon 22 of 22)	22577.0	NM_023064	65971.0	Mm.30227	NM_023064	ENSMUSG00000020096	Tbata	1700021K02Rik|AI428928|Spatial|Titest	thymus, brain and testes associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-129237568-2	chr6	129237462	129237662	+	733.0	f0_balb.idr|f0_c57.idr	intron (NR_040268, intron 2 of 3)	intron (NR_040268, intron 2 of 3)	483.0	NR_040265	76432.0	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16274099-2	chr7	16273999	16274199	+	999.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001136270)	promoter-TSS (NM_001136270)	-407.0	NM_001136270	66300.0	Mm.218698	NM_001136270	ENSMUSG00000091811	Inafm1	2610014I16Rik|Prr24	InaF motif containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71003392-2	chr17	71003292	71003492	+	861.625	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026064)	promoter-TSS (NM_026064)	-859.0	NM_026064	67268.0	Mm.489605	NM_026064	ENSMUSG00000024048	Myl12a	2900073G15Rik|AI838292|C80200	myosin, light chain 12A, regulatory, non-sarcomeric	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-85396698-2	chr9	85396598	85396798	+	554.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69548.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-5319975-4	chr5	5319879	5320079	+	965.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011074, intron 2 of 14)	intron (NM_011074, intron 2 of 14)	-53911.0	NM_001310448	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	-1.18832717429738	-1.16380929885254	-0.856565824811958	-1.18328408639367	-1.18787580914644	-1.16149229066421	-0.849604865165746	-1.18171197755832	0.0406512889656815	0.990321405100139	1
Merged-chr5-76975840-2	chr5	76975763	76975963	+	887.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025691, intron 1 of 18)	intron (NM_025691, intron 1 of 18)	1162.0	NM_025691	66661.0	Mm.296976	NM_025691	ENSMUSG00000036323	Srp72	5730576P14Rik|72kDa|AI132477|BC019196|C77589	signal recognition particle 72	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-32171976-2	chr18	32171876	32172076	+	752.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011946, intron 1 of 16)	B1_Mur1|SINE|Alu	8887.0	NM_011946	26405.0	Mm.211762	NM_011946	ENSMUSG00000024383	Map3k2	9630061B06Rik|AI585793|Mekk2|Mekk2b	mitogen-activated protein kinase kinase kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-76114350-2	chr14	76114250	76114450	+	609.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013745, intron 3 of 9)	intron (NM_013745, intron 3 of 9)	3459.0	NM_013745	27275.0	Mm.21138	NM_013745	ENSMUSG00000022009	Nufip1	Nufip	nuclear fragile X mental retardation protein interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-29955828-2	chr18	29955728	29955928	+	692.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-317037.0	NM_181414	225326.0	Mm.194127	NM_181414	ENSMUSG00000033628	Pik3c3	5330434F23Rik|Vps34	phosphatidylinositol 3-kinase catalytic subunit type 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-95893903-2	chr16	95893803	95894003	+	775.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_040484, intron 1 of 3)	MTE2b|LTR|ERVL-MaLR	4810.0	NR_040485	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91638249-2	chr16	91638149	91638349	+	618.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357351, intron 6 of 21)	intron (NM_001357351, intron 6 of 21)	8723.0	NM_010256	14450.0	Mm.4505	NM_010256	ENSMUSG00000022962	Gart	Gaps|Prgs	phosphoribosylglycinamide formyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-103132206-4	chr11	103132115	103132315	+	995.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1124.0	NM_001130516	71059.0	Mm.273871	NM_027658	ENSMUSG00000043372	Hexim2	4933402L21Rik	hexamethylene bis-acetamide inducible 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-119356841-2	chr8	119356741	119356941	+	917.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	12303.0	NM_024219	68196.0	Mm.358714	NM_024219	ENSMUSG00000031839	Hsbp1	0610007A03Rik|AA408769|Hsp25	heat shock factor binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115494038-1	chr5	115493938	115494138	+	797.0	f1_c57bl6.idr	Intergenic	Intergenic	-9554.0	NM_133760	75387.0	Mm.332616	NM_133760	ENSMUSG00000029524	Sirt4	4930596O17Rik	sirtuin 4	protein-coding	0.374691770090775	0.064063430195084	0.211291335484136	0.0570774450072656	0.542249955927575	0.499606776944007	0.0609718068749135	0.057603852121612	1.13887055817304	0.591313293429088	1
Merged-chr1-169531536-4	chr1	169531416	169531616	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023284)	promoter-TSS (NM_023284)	-52.0	NM_001355159	66977.0	Mm.151315	NM_023284	ENSMUSG00000026683	Nuf2	2410003C07Rik|AU044112|C85691|Cdca1|NUF2R	NUF2, NDC80 kinetochore complex component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-34389717-4	chr11	34389624	34389824	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025382, intron 1 of 3)	intron (NM_001025382, intron 1 of 3)	74902.0	NM_001025382	574403.0	Mm.444796	NM_001025382	ENSMUSG00000069911	Fam196b	EG574403|Gm6041	family with sequence similarity 196, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-78519177-1	chr9	78519077	78519277	+	598.0	f1_balb.idr	Intergenic	MTC|LTR|ERVL-MaLR	-37453.0	NM_010106	13627.0	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5139827-1	chr19	5139727	5139927	+	625.0	f1_balb.idr	intron (NM_153129, intron 19 of 23)	intron (NM_153129, intron 19 of 23)	-21419.0	NM_008451	16594.0	Mm.271648	NM_008451	ENSMUSG00000024862	Klc2	8030455F02Rik|AW212649|KLC 2|KLC-2	kinesin light chain 2	protein-coding	0.473090507339679	1.40740119200458	0.50287218523922	1.03827547660494	0.835770380301781	0.519911954613632	0.50597747218333	1.87564841362792	0.624435015221156	0.706995362896577	0.998431161219273
Merged-chr9-94362777-4	chr9	94362678	94362878	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	175303.0	NM_001033145	68861.0	Mm.258746	NM_001033145	ENSMUSG00000045414	1190002N15Rik	GoPro49|HASF	RIKEN cDNA 1190002N15 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71664274-2	chr8	71664174	71664374	+	617.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001029873, exon 4 of 42)	exon (NM_001029873, exon 4 of 42)	7483.0	NM_001029873	382018.0	Mm.334606	NM_001029873	ENSMUSG00000034799	Unc13a	2410078G03Rik|Munc13-1	unc-13 homolog A (C. elegans)	protein-coding	-0.110770885040087	-0.0828711814831671	-0.0918157975689432	0.572935956913183	-0.108975274792794	-0.0808795890606454	-0.0898273474773454	1.27022272588352	1.60548857212383	0.477932405253678	1
Merged-chr17-15807357-2	chr17	15807257	15807457	+	565.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_178615, exon 3 of 3)	exon (NM_178615, exon 3 of 3)	19229.0	NM_178615	68799.0	Mm.293466	NM_178615	ENSMUSG00000048027	Rgmb	1110059F19Rik|DRAGON	repulsive guidance molecule family member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19739743-2	chr7	19739643	19739843	+	802.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008990, intron 1 of 8)	Lx8|LINE|L1	9830.0	NM_008990	19294.0	Mm.4341	NM_008990	ENSMUSG00000062300	Nectin2	AI325026|AI987993|Cd112|MPH|Pvr|Pvrl2|Pvs|nectin-2	nectin cell adhesion molecule 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-74292520-1	chr16	74292420	74292620	+	581.0	f1_balb.idr	intron (NM_001358493, intron 2 of 28)	intron (NM_001358493, intron 2 of 28)	49547.0	NR_030464	751561.0		NR_030464	ENSMUSG00000104758	Mir691	Mirn691|mir-691|mmu-mir-691	microRNA 691	ncRNA	0.216715655280623	-0.0492651286011771	-0.0552558081081123	-0.0598967993210761	0.443887178846792	0.822539339135756	-0.0539321694205246	-0.0590848014256242	2.52471837990756	0.265786487098218	1
Merged-chr14-31181835-4	chr14	31181739	31181939	+	964.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022656, intron 13 of 20)	intron (NM_022656, intron 13 of 20)	-13198.0	NM_138672	192187.0	Mm.220821	NM_138672	ENSMUSG00000042286	Stab1	FEEL-1|FELE-1|MFEEL-1|MS-1|STAB-1|mKIAA0246	stabilin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133663544-1	chr4	133663444	133663644	+	553.0	f1_c57bl6.idr	intron (NM_001145956, intron 2 of 2)	RMER10B|LTR|ERVL	9103.0	NM_001145955	230801.0	Mm.217004	NM_178698	ENSMUSG00000043257	Pigv	B330013B03|D430024F16Rik	phosphatidylinositol glycan anchor biosynthesis, class V	protein-coding	0.263770589788861	0.858865172914281	0.283683748161964	1.34447181307911	1.02029691913832	0.295291281615845	0.285787762351981	0.277571521607875	-1.25593215361424	0.523538836400625	1
Merged-chr2-128368004-4	chr2	128367882	128368082	+	788.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028590, intron 1 of 2)	L3b|LINE|CR1	61369.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-86172079-1	chr5	86171979	86172179	+	763.0	f0_balb.idr	intron (NM_172712, intron 1 of 32)	intron (NM_172712, intron 1 of 32)	664.0	NM_172712	231380.0	Mm.34012	NM_172712	ENSMUSG00000035898	Uba6	4930542H01|5730469D23Rik|AU021846|AW124799|E1-L2|Ube1l2	ubiquitin-like modifier activating enzyme 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-20576322-3	chr14	20576227	20576427	+	835.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030180, intron 13 of 20)	intron (NM_030180, intron 13 of 20)	-29754.0	NM_008914	19056.0	Mm.274432	NM_008914	ENSMUSG00000021816	Ppp3cb	1110063J16Rik|Calnb|CnAbeta|Cnab	protein phosphatase 3, catalytic subunit, beta isoform	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-68059987-2	chr15	68059887	68060087	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	198869.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-26511145-2	chr19	26511045	26511245	+	959.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-94015.0	NM_011416	67155.0	Mm.491146	NM_011416	ENSMUSG00000024921	Smarca2	2610209L14Rik|SNF2alpha|Snf2l2|brahma|brm	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-22658105-4	chr8	22657906	22658106	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4569.0	NM_011130	18970.0	Mm.123211	NM_011130	ENSMUSG00000031536	Polb	A430088C08Rik	polymerase (DNA directed), beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-23314150-2	chr16	23314050	23314250	+	618.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252506, intron 1 of 6)	(TTTG)n|Simple_repeat|Simple_repeat	23680.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-54060023-4	chr10	54059911	54060111	+	978.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008548, intron 2 of 12)	intron (NM_008548, intron 2 of 12)	15785.0	NM_008548	17155.0	Mm.117294	NM_008548	ENSMUSG00000003746	Man1a	Man1a1|PCR1	mannosidase 1, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-142768109-2	chr5	142768009	142768209	+	695.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178242, intron 10 of 15)	MER20|DNA|hAT-Charlie	49278.0	NM_178242	231861.0	Mm.354649	NM_178242	ENSMUSG00000039477	Tnrc18	BC025631|EG381742|Zfp469	trinucleotide repeat containing 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-109613951-4	chr7	109613839	109614039	+	971.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001326, intron 1 of 19)	intron (NM_001001326, intron 1 of 19)	2629.0	NR_037617	76954.0	Mm.252009	NM_029811	ENSMUSG00000031024	St5	2010004M01Rik|2610305K15Rik	suppression of tumorigenicity 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-93933029-2	chr8	93932929	93933129	+	805.583313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113384, intron 3 of 7)	intron (NM_001113384, intron 3 of 7)	79611.0	NM_011787	23802.0	Mm.34641	NM_011787	ENSMUSG00000031751	Amfr	gp78	autocrine motility factor receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-122870641-2	chr6	122870541	122870741	+	678.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-3916.0	NM_026267	67602.0	Mm.288114	NM_026267	ENSMUSG00000030327	Necap1	1200016B17Rik|AI747569|mFLJ00061	NECAP endocytosis associated 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-14520822-2	chr8	14520722	14520922	+	588.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172910, intron 3 of 15)	intron (NM_172910, intron 3 of 15)	-367714.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-86568563-2	chr11	86568463	86568663	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15595.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-174437080-4	chr2	174436994	174437194	+	992.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022325, intron 2 of 5)	intron (NM_022325, intron 2 of 5)	1945.0	NM_022325	64138.0	Mm.156919	NM_022325	ENSMUSG00000016256	Ctsz	AI787083|AU019819|CTSX|D2Wsu143e	cathepsin Z	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118671892-2	chr9	118671829	118672029	+	907.7999880000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 10 of 27)	intron (NM_133721, intron 10 of 27)	-39763.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0.415375786702445	0.292190423912698	1.04663491326598	0.70583129827912	0.419799191717168	0.293688671411478	0.619007019428409	0.448003533686722	-1.32430891587924	0.444473349897858	1
Merged-chr5-144255998-4	chr5	144255762	144255962	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_018772, exon 2 of 3)	exon (NM_018772, exon 2 of 3)	637.0	NM_018772	55950.0	Mm.38011	NM_018772	ENSMUSG00000047843	Bri3	I3	brain protein I3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-161809163-2	chr1	161809057	161809257	+	621.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20662.0	NM_010177	14103.0	Mm.3355	NM_010177	ENSMUSG00000000817	Fasl	APT1LG1|CD178|CD95-L|CD95L|Fas-L|Faslg|Tnfsf6|Tnlg1a|gld	Fas ligand (TNF superfamily, member 6)	protein-coding	1.24145481273039	1.51819955161255	1.20825497765973	1.02913038398434	1.45039445577479	1.40260849098987	1.21692447518745	1.03289056149762	0.113660699466294	0.926252621877128	0.998431161219273
Merged-chr12-118303283-2	chr12	118303183	118303383	+	764.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1843.0	NM_001166385	20688.0	Mm.34699	NM_009239	ENSMUSG00000025323	Sp4	5730497N03Rik|HF-1b|HF1-b	trans-acting transcription factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100128411-2	chr7	100128311	100128511	+	992.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6911.0	NM_133692	67967.0	Mm.37562	NM_133692	ENSMUSG00000030726	Pold3	2410142G14Rik|C85233|P66|P68	polymerase (DNA-directed), delta 3, accessory subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-150832320-2	chr2	150832220	150832420	+	543.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_153781)	TTS (NM_153781)	10250.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-52817796-4	chr1	52817703	52817903	+	985.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008384)	promoter-TSS (NM_008384)	-115.0	NM_008384	16329.0	Mm.917	NM_008384	ENSMUSG00000026102	Inpp1	2300002C06Rik|AV137389	inositol polyphosphate-1-phosphatase	protein-coding	1.10995584996567	1.84195216016389	1.16765351445132	2.10472821642369	1.90447019643094	2.14545700794232	2.18663735754759	2.54667898519977	1.58212860858557	0.139992909217466	0.584333051179342
Merged-chr9-41084510-6	chr9	41084465	41084665	+	824.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176860, intron 1 of 13)	intron (NM_176860, intron 1 of 13)	-5059.0	NM_001357412	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	2.82479494732777	2.53483586038567	2.79702688250258	3.257550342397	1.59203961090635	3.35186603329338	1.44781766897475	2.62630855369322	-0.7057580516552	0.415345762106273	0.896676881011847
Merged-chr1-141421589-2	chr1	141421489	141421689	+	829.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR26_Mus|LTR|ERVK	-765187.0	NR_040604	75910.0	Mm.483845	NR_040604	ENSMUSG00000102368	4930590L20Rik	-	RIKEN cDNA 4930590L20 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-166441988-7	chr1	166441677	166441877	+	840.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13711.0	NR_151518	102636226.0	Mm.412602	NR_151518		Gm33354	-	predicted gene, 33354	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111738989-4	chr12	111738896	111739096	+	790.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163388, intron 4 of 5)	B3|SINE|B2	-19853.0	NM_001361612	16593.0	Mm.278357	NM_008450	ENSMUSG00000021288	Klc1	AI874768|Kns2	kinesin light chain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-60009771-1	chr10	60009671	60009871	+	616.0	f0_balb.idr	intron (NM_026937, intron 3 of 10)	intron (NM_026937, intron 3 of 10)	6444.0	NM_001199187	69090.0	Mm.155839	NM_026937	ENSMUSG00000044475	Ascc1	1810015P09Rik|AI550520|ASC1p50|CGI-18	activating signal cointegrator 1 complex subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-128558961-1	chr8	128558861	128559061	+	640.0	f1_c57bl6.idr	Intergenic	G-rich|Low_complexity|Low_complexity	-126693.0	NM_010578	16412.0	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	-1.1000153649687	-1.07922802209952	-1.09015834808889	-1.09695034511635	-0.83418652570522	-1.07685937486068	-1.08768396187082	-0.67530516418638	2.65610859557207	0.40904259789681	1
Merged-chr1-154118119-4	chr1	154118040	154118240	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-83047.0	NM_001204908	100503355.0	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	Gm10178|Gm203	zinc finger protein 648	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-16203280-3	chr1	16203194	16203394	+	785.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	97412.0	NM_133832	98711.0	Mm.274376	NM_133832	ENSMUSG00000025921	Rdh10	3110069K09Rik|4921506A21Rik|AI875664|AW549993|D1Ertd762e|m366Asp	retinol dehydrogenase 10 (all-trans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-80704974-4	chr18	80704875	80705075	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198429, intron 1 of 9)	intron (NM_198429, intron 1 of 9)	3198.0	NM_001164111	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	4.1170601928433	4.54364403028218	4.34015405953048	4.38599302090462	5.06750641482171	5.4591207874422	4.48630630767825	4.84386355885269	0.814039611741357	0.0271123099194663	0.22118777951978
Merged-chr7-46396809-2	chr7	46396709	46396909	+	597.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_008421, exon 1 of 2)	5' UTR (NM_008421, exon 1 of 2)	341.0	NM_001112739	16502.0	Mm.249386	NM_008421	ENSMUSG00000058975	Kcnc1	C230009H10Rik|KShIIIB|KV4|Kcr2-1|Kv3.1|NGK2|Shaw	potassium voltage gated channel, Shaw-related subfamily, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-75231276-3	chr14	75231170	75231370	+	793.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001247984)	TTS (NM_001247984)	-11017.0	NM_019775	56373.0	Mm.24242	NM_019775	ENSMUSG00000021999	Cpb2	1110032P04Rik|4930405E17Rik|AI255929|CPR|Cpu|TAFI	carboxypeptidase B2 (plasma)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-113635293-4	chr5	113635195	113635395	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008153, intron 1 of 2)	intron (NM_008153, intron 1 of 2)	8308.0	NM_001359060	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-59886684-4	chr10	59886581	59886781	+	997.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019965, intron 1 of 8)	intron (NM_019965, intron 1 of 8)	7090.0	NM_019965	56709.0	Mm.103610	NM_019965	ENSMUSG00000020109	Dnajb12	Dj10|mDj10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72414277-4	chr6	72414191	72414391	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019802)	promoter-TSS (NM_019802)	-17.0	NM_019802	56316.0	Mm.19937	NM_019802	ENSMUSG00000053460	Ggcx	-	gamma-glutamyl carboxylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-103340448-4	chr4	103340331	103340531	+	805.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025909, intron 7 of 8)	intron (NM_025909, intron 7 of 8)	26585.0	NM_025909	67013.0	Mm.30021	NM_025909	ENSMUSG00000035069	Oma1	2010001O09Rik|MPRP-1|ZMPOMA1	OMA1 zinc metallopeptidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70694816-2	chr8	70694724	70694924	+	672.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-2915.0	NM_010592	16478.0	Mm.419851	NM_010592	ENSMUSG00000071076	Jund	Jund1	jun D proto-oncogene	protein-coding	1.40970249392708	0.612597096148127	0.596371987680123	0.583516470738554	1.08468981442267	2.1109528832808	0.599991690255735	1.29453434306358	1.96579986545314	0.209049532270212	0.698396961623725
Merged-chr8-117343758-4	chr8	117343682	117343882	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	-5388.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84219809-2	chr8	84219709	84219909	+	948.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172503, intron 11 of 13)	intron (NM_172503, intron 11 of 13)	-10902.0	NR_037294	100526528.0		NR_037294	ENSMUSG00000105458	Mir3074-2	mir-3074-2|mmu-mir-3074-2	microRNA 3074-2	ncRNA	1.44463070953018	1.45700908253302	1.41029482464184	0.990701861943589	1.31896256329253	2.21191124952512	1.71483777218102	1.87896361609204	1.64268872606281	0.151864460404663	0.605472905162322
Merged-chr19-45082492-2	chr19	45082392	45082592	+	784.3000490000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6405.0	NM_001362397	107250.0	Mm.24417	NM_178929	ENSMUSG00000025213	Kazald1	AI842353|Bono1|IGFBP-rP10	Kazal-type serine peptidase inhibitor domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-17613464-4	chr10	17613368	17613568	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER63B|DNA|hAT-Blackjack	-109760.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-59132734-4	chr12	59132632	59132832	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001165253, intron 1 of 22)	intron (NM_001165253, intron 1 of 22)	1279.0	NM_001165253	338320.0	Mm.213215	NM_146034	ENSMUSG00000021000	Mia2	Ctage5|D12Bwg0579e|Mea6|Mgea|Mgea6	melanoma inhibitory activity 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-75876480-2	chr14	75876380	75876580	+	793.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28557.0	NR_028481	100303751.0	Mm.484707	NR_028481	ENSMUSG00000065147	Snora31	MBI-161	small nucleolar RNA, H/ACA box 31	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-142906794-4	chr5	142906724	142906924	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007393)	promoter-TSS (NM_007393)	-70.0	NM_007393	11461.0	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-7096990-2	chr6	7096890	7097090	+	646.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	140972.0	NM_001077713	71238.0	Mm.389086	NM_001077713	ENSMUSG00000042505	Sdhaf3	0610005M07Rik|4933430A16Rik|Acn9	succinate dehydrogenase complex assembly factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-29969173-3	chr14	29969058	29969258	+	594.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019979, intron 1 of 4)	B1_Mur2|SINE|Alu	778.0	NM_019979	80795.0	Mm.104491	NM_019979	ENSMUSG00000042682	Selenok	1110001C03Rik|AA673253|HSPC030|Hsp30|Selk	selenoprotein K	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91201465-2	chr2	91201365	91201565	+	626.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	-1447.0	NM_001357067	11432.0	Mm.45570	NM_007387	ENSMUSG00000002103	Acp2	Acp-2|LAP	acid phosphatase 2, lysosomal	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-97254908-3	chr13	97254814	97255014	+	790.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13809.0	NM_007930	13803.0	Mm.241073	NM_007930	ENSMUSG00000041773	Enc1	Nrpb|PIG10	ectodermal-neural cortex 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-22392907-2	chr18	22392807	22393007	+	593.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001167777, intron 3 of 12)	intron (NM_001167777, intron 3 of 12)	47818.0	NM_001167777	211961.0	Mm.392310	NM_001167777	ENSMUSG00000045215	Asxl3	C230079D11Rik|D430002O22Rik|D930044O18Rik|Gm329|Gm945	additional sex combs like 3, transcriptional regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-120577322-4	chr9	120577238	120577438	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_073359)	promoter-TSS (NR_073359)	7.0	NR_073359	76100.0	Mm.48212	NR_073359	ENSMUSG00000052658	5830454E08Rik	-	RIKEN cDNA 5830454E08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33684810-2	chr16	33684710	33684910	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_175256, exon 1 of 15)	exon (NM_175256, exon 1 of 15)	344.0	NM_175256	77446.0	Mm.245741	NM_172934	ENSMUSG00000075254	Heg1	4632417D23Rik|5530401I02Rik|9530025L16Rik|BC038614|Gm629	heart development protein with EGF-like domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-73041142-4	chr17	73041066	73041266	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA5|LINE|L1	-66819.0	NM_001177968	225010.0	Mm.329194	NM_001081071	ENSMUSG00000054469	Lclat1	AI181996|Agpat8|Alcat1|Gm91|Lycat	lysocardiolipin acyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-64447162-2	chr1	64447062	64447262	+	605.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-85642.0	NM_009952	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-41634583-6	chr13	41634426	41634626	+	801.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001163572, exon 3 of 3)	exon (NM_001163572, exon 3 of 3)	28310.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167418822-2	chr2	167418722	167418922	+	877.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2888.0	NM_148929	77031.0	Mm.278924	NM_148929	ENSMUSG00000039463	Slc9a8	1200006P13Rik|6430709P13Rik|AI182282|NHE-8|NHE8	solute carrier family 9 (sodium/hydrogen exchanger), member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59156481-3	chr15	59156368	59156568	+	976.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR50|LTR|ERVL	-74442.0	NM_144800	211401.0	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-20835092-2	chr14	20834992	20835192	+	707.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1570.0	NM_008873	18792.0	Mm.4183	NM_008873	ENSMUSG00000021822	Plau	u-PA|uPA	plasminogen activator, urokinase	protein-coding	1.43277492895704	1.76433657673799	2.35773622704805	1.10005822551796	1.44341010220366	2.17470135859365	1.98599489310033	1.80201611795952	0.322487844944068	0.766832190911218	0.998431161219273
Merged-chr15-84923787-3	chr15	84923761	84923961	+	987.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016714, intron 1 of 7)	CpG	433.0	NM_016714	18141.0	Mm.28379	NM_016714	ENSMUSG00000016619	Nup50	1700030K07Rik|AI413123|Npap60	nucleoporin 50	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-33958983-2	chr11	33958883	33959083	+	661.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001190886, intron 1 of 7)	ORR1F|LTR|ERVL-MaLR	-4030.0	NM_031169	16533.0	Mm.6206	NM_031169	ENSMUSG00000020155	Kcnmb1	BKbeta1	potassium large conductance calcium-activated channel, subfamily M, beta member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-112395971-2	chr13	112395871	112396071	+	839.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68099.0	NM_010560	16195.0	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-33190937-4	chr14	33190864	33191064	+	825.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5898.0	NM_001146022	545030.0	Mm.318345	NM_001146022	ENSMUSG00000051506	Wdfy4	Gm18810	WD repeat and FYVE domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129800550-4	chr2	129800434	129800634	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183262)	promoter-TSS (NM_183262)	17.0	NM_001038635	67333.0	Mm.389329	NM_183262	ENSMUSG00000037885	Stk35	1700054C12Rik|CLIK1|Stk35l1	serine/threonine kinase 35	protein-coding	4.6917511126028	4.60445035080329	4.66618709567989	5.06054130056242	5.77877908318148	4.69385053040433	4.88418180114213	5.74745455997351	0.714111578656769	0.0437244084608837	0.300117535877393
Merged-chr13-108214413-4	chr13	108214333	108214533	+	747.383301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029001)	promoter-TSS (NM_029001)	29.0	NM_029001	74559.0	Mm.286127	NM_029001	ENSMUSG00000021696	Elovl7	9130013K24Rik|AI840082	ELOVL family member 7, elongation of long chain fatty acids (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-63930280-4	chr7	63930182	63930382	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021366, intron 1 of 1)	ORR1D2|LTR|ERVL-MaLR	8633.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-4347058-3	chr18	4346910	4347110	+	775.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007746, intron 2 of 7)	intron (NM_007746, intron 2 of 7)	5943.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89801644-4	chr3	89801525	89801725	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28016.0	NM_027315	70093.0	Mm.41438	NM_027315	ENSMUSG00000042572	Ube2q1	1110002C01Rik|2310012M18Rik|AI854014|Gtap|NICE-5|PRO3094|Ube2q	ubiquitin-conjugating enzyme E2Q family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-82081099-2	chr11	82080999	82081199	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20746.0	NM_011331	20293.0	Mm.867	NM_011331	ENSMUSG00000035352	Ccl12	MCP-5|Scya12	chemokine (C-C motif) ligand 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-72468944-3	chr9	72468773	72468973	+	752.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009359, intron 10 of 11)	intron (NM_009359, intron 10 of 11)	23086.0	NM_009359	21778.0	Mm.14485	NM_009359	ENSMUSG00000090626	Tex9	Gm19407|tsec-1	testis expressed gene 9	protein-coding	-0.350248495477105	0.116245471254172	-0.180548079066185	-0.0665840188464629	-0.100655656406497	-0.338708201505016	-0.3422724198125	-0.345294905914792	-1.77992680230645	0.458229367816723	1
Merged-chr12-91676111-4	chr12	91676009	91676209	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 4 of 6)	intron (NM_175367, intron 4 of 6)	-85622.0	NM_175335	83602.0	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89764406-4	chr3	89764267	89764467	+	917.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009602, exon 1 of 6)	exon (NM_009602, exon 1 of 6)	265.0	NM_009602	11444.0	Mm.35088	NM_009602	ENSMUSG00000027950	Chrnb2	Acrb-2|Acrb2|C030030P04Rik|[b]2-nAchR	cholinergic receptor, nicotinic, beta polypeptide 2 (neuronal)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-134108000-2	chr1	134107900	134108100	+	670.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3242.0	NM_001284525	71884.0	Mm.328268	NM_027979	ENSMUSG00000026450	Chit1	2300002L19Rik	chitinase 1 (chitotriosidase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-6402929-3	chr11	6402828	6403028	+	871.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005867, intron 15 of 18)	intron (NM_001005867, intron 15 of 18)	1298.0	NR_106109	102465759.0		NR_106109	ENSMUSG00000098516	Mir7651	Gm27664|mmu-mir-7651	microRNA 7651	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44860412-2	chr7	44860312	44860512	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_021549, exon 7 of 16)	exon (NM_021549, exon 7 of 16)	3009.0	NM_001290767	59047.0	Mm.238254	NM_021549	ENSMUSG00000002963	Pnkp	1810009G08Rik|PNK	polynucleotide kinase 3'- phosphatase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150001474-1	chr4	150001374	150001574	+	733.0	f0_balb.idr	intron (NM_173371, intron 1 of 4)	intron (NM_173371, intron 1 of 4)	1762.0	NM_001291004	100198.0	Mm.22183	NM_173371	ENSMUSG00000028980	H6pd	AI785303|G6pd1|Gpd-1|Gpd1	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	protein-coding	-1.32440223303897	-1.29339468673833	-0.717877708899544	-1.31276353204239	-1.32392690786997	-1.29109028300231	-1.30162128075409	-1.31119997543009	-2.49510383040271	0.470258445164311	1
Merged-chr17-25570234-2	chr17	25570134	25570334	+	606.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045176)	promoter-TSS (NR_045176)	452.0	NM_011447	20681.0	Mm.258220	NM_011447	ENSMUSG00000024176	Sox8	-	SRY (sex determining region Y)-box 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84742304-2	chr8	84742203	84742403	+	683.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081982, intron 2 of 9)	intron (NM_001081982, intron 2 of 9)	32066.0	NM_001081981	18032.0	Mm.9394	NM_010906	ENSMUSG00000001911	Nfix	CTF|NF-I/X|NF1-X|NFI-X	nuclear factor I/X	protein-coding	1.07783396158868	1.22976351145314	0.683229488504701	1.36363156621224	0.662328831816218	0.696735979337742	1.31609117034144	1.37226118367245	-0.222321371853654	0.884109395060233	0.998431161219273
Merged-chr11-115903325-1	chr11	115903225	115903425	+	555.0	f1_c57bl6.idr	intron (NM_183259, intron 1 of 2)	intron (NM_183259, intron 1 of 2)	3186.0	NM_183259	66528.0	Mm.275740	NM_183259	ENSMUSG00000048442	Smim5	2210020M01Rik	small integral membrane protein 5	protein-coding	0.777140605540493	0.0699891393708106	0.0640663483976939	0.0594888277670539	0.542797352195674	0.579201823017193	0.065373627682748	0.0602890332679913	0.285627773927592	0.896682503875511	1
Merged-chr10-25317862-2	chr10	25317762	25317962	+	741.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C|LTR|ERVK	-18699.0	NM_018747	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-51583856-2	chr3	51583756	51583956	+	757.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23033.0	NM_080793	73251.0	Mm.192111	NM_080793	ENSMUSG00000037111	Setd7	1600028F23Rik|H3K4MT|KMT7|Set7|Set7/9|mKIAA1717	SET domain containing (lysine methyltransferase) 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120824456-8	chr11	120824339	120824539	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_007988, exon 1 of 43)	5' UTR (NM_007988, exon 1 of 43)	108.0	NM_007988	14104.0	Mm.236443	NM_007988	ENSMUSG00000025153	Fasn	A630082H08Rik|FAS	fatty acid synthase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99978217-2	chr7	99978117	99978317	+	953.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175388, intron 1 of 5)	PB1D10|SINE|Alu	2241.0	NM_175388	108937.0	Mm.323087	NM_175388	ENSMUSG00000058761	Rnf169	2900057K09Rik	ring finger protein 169	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-137837990-4	chr4	137837868	137838068	+	915.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24269.0	NM_199307	230857.0	Mm.401062	NM_199307	ENSMUSG00000057530	Ece1	AW322500|ECE-1|ECE-1a|ECE-1b|ECE-1d	endothelin converting enzyme 1	protein-coding	3.79591795013634	2.68694375808884	3.40819059096313	4.16095315085796	4.22273043877125	3.92432215031299	4.1362903302402	4.87964125106668	0.980522989072684	0.0522166656707634	0.334547288030163
Merged-chr9-107313412-3	chr9	107313318	107313518	+	966.2777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16759.0	NM_001317354	12700.0	Mm.4592	NM_009895	ENSMUSG00000032578	Cish	CIS-1|CIS1|Cis|F17|F23|SOCS	cytokine inducible SH2-containing protein	protein-coding	4.12994771541704	4.75642358939122	4.18670033075346	4.96678807126378	1.2746525304733	1.53997256194384	2.81097741371709	1.38885313568895	-4.38956326073806	0.000307680273710875	0.00749299307980328
Merged-chr7-123346101-3	chr7	123345964	123346164	+	714.733337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316713, intron 1 of 19)	intron (NM_001316713, intron 1 of 19)	23851.0	NM_001122643	70497.0	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-3010337-2	chr17	3010230	3010430	+	737.0	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	73853.0	NR_003519	328734.0	Mm.335641	NR_003519		Pisd-ps2	D030013I16Rik	phosphatidylserine decarboxylase, pseudogene 2	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34317068-2	chr17	34316968	34317168	+	716.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_010382)	TTS (NM_010382)	-8607.0	NM_001033978	381091.0	Mm.139204	NM_001033978	ENSMUSG00000067341	H2-Eb2	A130038H09Rik|H-2Eb2|Ia-5|Ia5|Iebeta2	histocompatibility 2, class II antigen E beta2	protein-coding	-0.15736580681746	-0.394528640459167	0.0287483953604838	-0.400790932104079	0.0454002215772212	-0.393727537494538	-0.397291290495569	-0.400316573064802	-0.497733044144014	0.846197039713914	1
Merged-chr11-3178115-2	chr11	3178008	3178208	+	984.916626	f0_balb.idr|f1_balb.idr	intron (NM_030207, intron 5 of 32)	intron (NM_030207, intron 5 of 32)	15355.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-32053641-4	chr5	32053495	32053695	+	760.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144541, intron 10 of 11)	intron (NM_144541, intron 10 of 11)	-82877.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-115428214-4	chr8	115428108	115428308	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	278686.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-157141230-4	chr1	157141142	157141342	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177644, intron 17 of 17)	intron (NM_177644, intron 17 of 17)	-32562.0	NM_001305063	73435.0	Mm.116705	NM_028540	ENSMUSG00000026592	Tex35	1700057K13Rik	testis expressed 35	protein-coding	5.06514365545282	4.38586915441314	4.4156430328904	4.85215752273604	4.59638377611846	4.47721260186751	3.45485216539887	4.46968399189985	-0.499546454071274	0.222134549957454	0.713583934962101
Merged-chr4-42999879-4	chr4	42999765	42999965	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009503, intron 1 of 16)	CpG	642.0	NM_009503	269523.0	Mm.245976	NM_009503	ENSMUSG00000028452	Vcp	3110001E05|CDC48|p97|p97/VCP	valosin containing protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44471070-2	chr7	44470970	44471170	+	918.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_106019)	TTS (NR_106019)	723.0	NR_106019	102465637.0		NR_106019	ENSMUSG00000098661	Mir7052	Gm27583|mmu-mir-7052	microRNA 7052	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-107786738-3	chr11	107786633	107786833	+	814.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019431, intron 1 of 3)	intron (NM_019431, intron 1 of 3)	7961.0	NM_019431	54377.0	Mm.103724	NM_019431	ENSMUSG00000020723	Cacng4	AI413107|AW491861	calcium channel, voltage-dependent, gamma subunit 4	protein-coding	1.86313722139269	1.96649137681889	2.41665957055025	1.14223895547428	2.16066628940362	1.19146583507444	1.77001222052203	2.18438197771147	-0.104385012675679	0.9247559013043	0.998431161219273
Merged-chr16-16073966-2	chr16	16073866	16074066	+	805.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355731, intron 5 of 18)	intron (NM_001355731, intron 5 of 18)	72885.0	NM_001355731	224008.0	Mm.244703	NM_146068	ENSMUSG00000041974	Spidr	2310008H04Rik|Kiaa0146	scaffolding protein involved in DNA repair	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-146619680-3	chr6	146619578	146619778	+	997.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026281, intron 5 of 11)	intron (NM_026281, intron 5 of 11)	14914.0	NM_026281	67623.0	Mm.278037	NM_026281	ENSMUSG00000040234	Tm7sf3	2010003B14Rik|NARP1	transmembrane 7 superfamily member 3	protein-coding	3.89166854225694	3.57814709949328	4.31171179294802	3.91109499691061	3.97692621402446	3.96623533145279	4.70324502040026	4.05417898120265	0.355896050540289	0.429105886059182	0.903416445927044
Merged-chr1-91253711-2	chr1	91253611	91253811	+	739.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355764, intron 1 of 10)	intron (NM_001355764, intron 1 of 10)	3145.0	NM_001355764	67921.0	Mm.337238	NM_026454	ENSMUSG00000034343	Ube2f	2510010F15Rik|AI851109	ubiquitin-conjugating enzyme E2F (putative)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-23738059-2	chr17	23737959	23738159	+	750.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_023824, intron 2 of 2)	intron (NM_023824, intron 2 of 2)	2271.0	NM_023824	76498.0	Mm.491253	NM_023824	ENSMUSG00000023909	Paqr4	1500004C10Rik	progestin and adipoQ receptor family member IV	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83608205-3	chr11	83608119	83608319	+	814.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_036453, intron 2 of 8)	intron (NR_036453, intron 2 of 8)	-15132.0	NM_009139	20305.0	Mm.137	NM_009139	ENSMUSG00000018927	Ccl6	MRP-1|Scya6|c10	chemokine (C-C motif) ligand 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-55543601-2	chr9	55543501	55543701	+	698.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027397, intron 3 of 5)	intron (NM_027397, intron 3 of 5)	2452.0	NM_027397	104360.0	Mm.273996	NM_027397	ENSMUSG00000032318	Isl2	3110001N10Rik	insulin related protein 2 (islet 2)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120047731-2	chr11	120047631	120047831	+	728.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001198785)	promoter-TSS (NM_001198785)	-586.0	NM_007377	11302.0	Mm.6826	NM_007377	ENSMUSG00000025375	Aatk	AATYK|aatyk1|mKIAA0641	apoptosis-associated tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-35623199-3	chr2	35623103	35623303	+	964.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290641, intron 1 of 15)	intron (NM_001290641, intron 1 of 15)	1222.0	NM_001114124	69601.0	Mm.29629	NM_001001602	ENSMUSG00000026883	Dab2ip	2310011D08Rik|AI480459|Aip1|mKIAA1743	disabled 2 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-49974538-2	chr16	49974438	49974638	+	565.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A0-int|LTR|ERVL-MaLR	-5922.0	NR_045001	628951.0	Mm.428032	NR_045001		Gm6936	-	predicted gene 6936	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-89351697-4	chr4	89351596	89351796	+	970.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132431, intron 2 of 9)	intron (NR_132431, intron 2 of 9)	-40664.0	NM_007670	12579.0	Mm.423094	NM_007670	ENSMUSG00000073802	Cdkn2b	AV083695|INK4b|MTS2|p15|p15(INK4b)|p15INK4b	cyclin dependent kinase inhibitor 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-113389550-1	chr6	113389450	113389650	+	540.0	f1_balb.idr	3' UTR (NM_001170486, exon 5 of 5)	3' UTR (NM_001170486, exon 5 of 5)	290.0	NM_001142732	101100.0	Mm.388573	NM_133923	ENSMUSG00000030276	Ttll3	4833441J24Rik|AI450050	tubulin tyrosine ligase-like family, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-83266572-4	chr4	83266486	83266686	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027238, intron 3 of 19)	B4|SINE|B4	57603.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	2.27920849848497	2.12146118028649	3.13298200346139	1.30074028026795	2.83965210916623	2.72280220638871	3.35310187643905	1.3072325186728	0.699909349295719	0.468774061344042	0.924737467231384
Merged-chr9-106229394-1	chr9	106229294	106229494	+	699.0	f1_balb.idr	Intergenic	B1_Mur1|SINE|Alu	6796.0	NM_031178	81897.0	Mm.44889	NM_031178	ENSMUSG00000045322	Tlr9	-	toll-like receptor 9	protein-coding	2.02860452390689	1.87834564363186	1.44447010169256	1.17750584439328	2.38726796348562	2.51319264772445	2.42590299583731	1.6093725969893	1.58741417465144	0.117980071250518	0.538905416826286
Merged-chr11-48817282-6	chr11	48817151	48817351	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_145377, exon 1 of 6)	5' UTR (NM_145377, exon 1 of 6)	140.0	NM_145377	211007.0	Mm.794	NM_145377	ENSMUSG00000040365	Trim41	AW552703|BC020156|R75223|RINCK	tripartite motif-containing 41	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-35174291-3	chr2	35174184	35174384	+	967.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012018, intron 39 of 43)	MTD|LTR|ERVL-MaLR	26836.0	NM_026697	68365.0	Mm.198264	NM_026697	ENSMUSG00000026878	Rab14	0610030G24Rik|2810475J17Rik|A830021G03Rik|AI314285|AI649155|D030017L14Rik	RAB14, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-111721201-4	chr10	111721092	111721292	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-126919.0	NR_045344	71321.0	Mm.410785	NR_045344	ENSMUSG00000097082	4933440J02Rik	-	RIKEN cDNA 4933440J02 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-94945412-1	chr11	94945312	94945512	+	759.0	f1_c57bl6.idr	exon (NM_007742, exon 30 of 51)	exon (NM_007742, exon 30 of 51)	9188.0	NM_007742	12842.0	Mm.277735	NM_007742	ENSMUSG00000001506	Col1a1	Col1a-1|Cola-1|Cola1|Mov-13|Mov13	collagen, type I, alpha 1	protein-coding	1.09697668864801	0.518433288533265	0.509078446028538	0.501803382023867	1.19596695289722	1.18590434866072	0.511148793205595	1.0842865479728	1.70888866431891	0.325265756845745	1
Merged-chr18-46524436-4	chr18	46524376	46524576	+	936.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_173423, exon 2 of 3)	exon (NM_173423, exon 2 of 3)	1495.0	NM_173423	240263.0	Mm.38249	NM_173423	ENSMUSG00000033319	Fem1c	2610312A07Rik|3632443A22Rik|AI646567	fem-1 homolog c (C.elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-10474436-4	chr10	10474349	10474549	+	858.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-2135.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43418039-2	chr4	43417939	43418139	+	789.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037709, intron 2 of 11)	ID_B1|SINE|B4	11095.0	NM_177377	329831.0	Mm.454466	NM_177377	ENSMUSG00000042788	Fam166b	4833436C18Rik	family with sequence similarity 166, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-13661042-1	chr8	13660942	13661142	+	1000.0	f0_balb.idr	intron (NM_009025, intron 1 of 23)	intron (NM_009025, intron 1 of 23)	16545.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-90778548-3	chr5	90778449	90778649	+	645.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6114.0	NM_019932	56744.0	Mm.332490	NM_019932	ENSMUSG00000029373	Pf4	Cxcl4|Scyb4	platelet factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-36658222-2	chr16	36658122	36658322	+	698.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019388, intron 1 of 7)	L1MD2|LINE|L1	7855.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-20077731-2	chr10	20077616	20077816	+	720.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008580, intron 12 of 29)	intron (NM_008580, intron 12 of 29)	-71204.0	NM_008635	17761.0	Mm.20928	NM_008635	ENSMUSG00000019996	Map7	E-MAP-115|MAP-7|Mtap7|R75000|mshi|mste|ste	microtubule-associated protein 7	protein-coding	0.03657582154393	-0.209077264696203	-0.213490306131629	0.302833177016085	-0.221680548048063	-0.208081136386266	0.352209811043148	-0.216295175289523	-0.341045200871995	0.887587296689108	1
Merged-chr17-56030368-2	chr17	56030268	56030468	+	650.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013664, intron 1 of 9)	intron (NM_013664, intron 1 of 9)	6269.0	NM_013664	20405.0	Mm.1773	NM_013664	ENSMUSG00000003200	Sh3gl1	C77078|EEN|SH3P8|Sh3d2b	SH3-domain GRB2-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-63146116-1	chr14	63146016	63146216	+	572.0	f0_balb.idr	TTS (NM_007798)	TTS (NM_007798)	23654.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-10414990-2	chr8	10414890	10415090	+	980.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001319151, intron 16 of 34)	intron (NM_001319151, intron 16 of 34)	261079.0	NM_001319151	244281.0	Mm.422761	NM_001081397	ENSMUSG00000039057	Myo16	BM140241|C230040D10Rik|Gm1105|NYAP3|mKIAA0865	myosin XVI	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84967660-1	chr8	84967560	84967760	+	563.0	f1_c57bl6.idr	Intergenic	Intergenic	-1649.0	NM_027187	69724.0	Mm.182470	NM_027187	ENSMUSG00000052926	Rnaseh2a	2400006P09Rik|RNASEHI|RNHIA|RNHL	ribonuclease H2, large subunit	protein-coding	1.45513753931432	0.914556590233491	1.58981763121167	0.88409001217981	1.84079641997942	1.79143373747786	1.83160498011005	0.886455890418229	1.35275021877542	0.313394686576085	0.815052626345346
Merged-chr13-49653416-3	chr13	49653308	49653508	+	853.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025495)	promoter-TSS (NM_025495)	330.0	NR_073167	70930.0	Mm.258915	NM_001081350	ENSMUSG00000021392	Nol8	4921532D18Rik|5730412B09Rik	nucleolar protein 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56005539-2	chr17	56005439	56005639	+	862.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_102313)	promoter-TSS (NR_102313)	67.0	NR_102313	106766.0	Mm.204991	NM_145934	ENSMUSG00000038781	Stap2	AW049765|STAP-2	signal transducing adaptor family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-40695496-2	chr19	40695396	40695596	+	737.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009848, intron 1 of 9)	intron (NM_009848, intron 1 of 9)	35726.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	-0.734697168562934	-1.28094420828655	-1.29131886204401	-1.29984091153697	-1.31008363841169	-1.2786959775384	-1.28897026783925	-1.29831546875223	-2.42902550944018	0.482518537989684	1
Merged-chr9-59734021-4	chr9	59733910	59734110	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001172071)	TTS (NM_001172071)	16639.0	NM_001172069	71599.0	Mm.279070	NM_027838	ENSMUSG00000051705	Senp8	9130010J17Rik|AU020827|Den1|Nedp1|Prsc2	SUMO/sentrin specific peptidase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-107084724-4	chr3	107084609	107084809	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16858.0	NM_008417	16490.0	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-80722482-2	chr1	80722382	80722582	+	542.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175291, intron 1 of 55)	MLT1A0|LTR|ERVL-MaLR	36071.0	NM_175291	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124835678-2	chr6	124835578	124835778	+	623.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_013530, exon 9 of 10)	exon (NM_013530, exon 9 of 10)	4597.0	NM_013530	14695.0	Mm.68889	NM_013530	ENSMUSG00000023439	Gnb3	Gnb-3	guanine nucleotide binding protein (G protein), beta 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-32003186-4	chr16	32003078	32003278	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_177103, exon 1 of 10)	5' UTR (NM_177103, exon 1 of 10)	109.0	NM_001357087	320213.0	Mm.152890	NM_023801	ENSMUSG00000022772	Senp5	6230429P13Rik|A730063F07Rik|AI851888|BB189556|SMT3IP3	SUMO/sentrin specific peptidase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-8637347-2	chr15	8637247	8637447	+	712.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_148938, intron 9 of 9)	B2_Mm2|SINE|B2	73460.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-73568007-2	chr7	73567907	73568107	+	960.9166869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9612.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-58115425-4	chr13	58115330	58115530	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1783.0	NM_001362415	100503085.0	Mm.379256	NM_001195075	ENSMUSG00000014164	Klhl3	7530408C15Rik|AI430941|EG627648	kelch-like 3	protein-coding	1.77416937436021	2.11106929595823	2.16606235102968	2.30945423225325	1.7869395901829	1.97948185839363	2.05898574154638	2.32101879754186	-0.139835765054154	0.876478780090132	0.998431161219273
Merged-chr9-122123290-2	chr9	122123190	122123390	+	638.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357776, intron 1 of 5)	intron (NM_001357776, intron 1 of 5)	5831.0	NM_001357776	20623.0	Mm.257989	NM_133741	ENSMUSG00000038145	Snrk	2010012F07Rik|AI448042|AW547029|E030034B15|R74830|mKIAA0096	SNF related kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-127042899-2	chr4	127042799	127042999	+	740.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18255.0	NM_026670	68310.0	Mm.273806	NM_026670	ENSMUSG00000043872	Zmym1	5830412B09Rik|AW209050	zinc finger, MYM domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-87326875-4	chr1	87326787	87326987	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001110212)	promoter-TSS (NM_001110212)	-111.0	NM_146112	227331.0	Mm.23065	NM_146112	ENSMUSG00000048000	Gigyf2	2610016F01Rik|A830080H02Rik|AI852361|AW259676|BC006835|Tnrc15|mKIAA0642	GRB10 interacting GYF protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56559990-2	chr17	56559890	56560090	+	555.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-5603.0	NR_130128	100504425.0	Mm.384143	NR_130128	ENSMUSG00000110218	Gm20219	Tincr	predicted gene, 20219	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-37316996-4	chr6	37316876	37317076	+	738.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17000.0	NM_001347104	320127.0	Mm.119469	NM_001081206	ENSMUSG00000038665	Dgki	6430604M11Rik|C130010K08Rik	diacylglycerol kinase, iota	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-58482796-4	chr16	58482660	58482860	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357433, intron 6 of 10)	MLT1J|LTR|ERVL-MaLR	40666.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-84251006-4	chr1	84250914	84251114	+	758.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003948, intron 1 of 2)	intron (NM_001003948, intron 1 of 2)	-32053.0	NR_105771	102465181.0		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3892123-4	chr12	3892000	3892200	+	910.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153743, intron 1 of 17)	intron (NM_153743, intron 1 of 17)	356.0	NM_153743	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-75894428-4	chr15	75894347	75894547	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172607)	promoter-TSS (NM_172607)	34.0	NM_172607	223646.0	Mm.288368	NM_172607	ENSMUSG00000022574	Naprt	9130210N20Rik|Naprt1	nicotinate phosphoribosyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127637739-2	chr7	127637639	127637839	+	792.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22467.0	NR_155451	320683.0	Mm.156718	NM_177226	ENSMUSG00000045639	Zfp629	9330199A09Rik|Znf629	zinc finger protein 629	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-6781329-5	chr17	6781122	6781322	+	854.896667	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009510, intron 1 of 12)	intron (NM_009510, intron 1 of 12)	1558.0	NM_009510	22350.0	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-49239144-2	chr2	49239044	49239244	+	686.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029924, intron 7 of 16)	intron (NM_029924, intron 7 of 16)	-6756.0	NM_001290656	109241.0	Mm.440436	NM_029924	ENSMUSG00000036792	Mbd5	9430004D19Rik|AA536666|AI426407|C030040A15Rik|Gm1630	methyl-CpG binding domain protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-34078878-6	chr13	34078870	34079070	+	872.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009450)	promoter-TSS (NM_009450)	-962.0	NM_009450	22151.0	Mm.422827	NM_009450	ENSMUSG00000058672	Tubb2a	M(beta)2|Tubb2	tubulin, beta 2A class IIA	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-104565069-4	chr8	104564962	104565162	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23753.0	NM_001301165	12354.0	Mm.129265	NM_053070	ENSMUSG00000031883	Car7	AV343731|Ca7	carbonic anhydrase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-121636009-2	chr9	121635909	121636109	+	861.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026915, intron 1 of 5)	intron (NM_026915, intron 1 of 5)	5584.0	NM_026915	69032.0	Mm.33351	NM_026915	ENSMUSG00000032530	Lyzl4	1810009N24Rik|AI504271|Lyc4|Lyza	lysozyme-like 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120573116-4	chr11	120573003	120573203	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_011032, exon 1 of 11)	5' UTR (NM_011032, exon 1 of 11)	150.0	NM_011032	18453.0	Mm.16660	NM_011032	ENSMUSG00000025130	P4hb	ERp59|PDI|Pdia1|Thbp	prolyl 4-hydroxylase, beta polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69678824-2	chr11	69678724	69678924	+	697.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001163571, exon 3 of 11)	exon (NM_001163571, exon 3 of 11)	3146.0	NM_030702	80886.0	Mm.284592	NM_030702	ENSMUSG00000005204	Senp3	AA408656|Smt3ip|Smt3ip1	SUMO/sentrin specific peptidase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33191072-3	chr16	33190864	33191064	+	912.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176840, intron 1 of 12)	intron (NM_176840, intron 1 of 12)	5893.0	NM_176840	106326.0	Mm.486405	NM_176840	ENSMUSG00000022807	Osbpl11	9430097N02Rik|AI132306|AU019795|ORP-11	oxysterol binding protein-like 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26572810-1	chr17	26572710	26572910	+	581.0	f1_c57bl6.idr	intron (NM_026170, intron 1 of 9)	L1M2|LINE|L1	11298.0	NM_026170	67458.0	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-181153912-2	chr2	181153812	181154012	+	751.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007906, intron 2 of 7)	intron (NM_007906, intron 2 of 7)	3103.0	NM_007906	13628.0	Mm.2645	NM_007906	ENSMUSG00000016349	Eef1a2	EEF1AL|EF-1-alpha-2|Eef1a|S1|STN|wasted|wst	eukaryotic translation elongation factor 1 alpha 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-52468277-3	chr18	52468196	52468396	+	956.2777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026040, intron 1 of 7)	intron (NM_026040, intron 1 of 7)	2603.0	NM_026040	67222.0	Mm.100617	NM_026040	ENSMUSG00000024528	Srfbp1	2810036K01Rik|p49/STRAP	serum response factor binding protein 1	protein-coding	2.53839849182811	2.38040384929292	2.97206767762276	2.60485702226791	1.57077968927055	1.24998796636738	1.89082512370236	1.18588075743633	-3.01671870925706	0.0028846687221707	0.0442586385276266
Merged-chr11-102690574-2	chr11	102690474	102690674	+	863.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025918, intron 2 of 4)	RSINE1|SINE|B4	7151.0	NM_025918	52715.0	Mm.277638	NM_025918	ENSMUSG00000020925	Ccdc43	2610001E01Rik|D11Ertd707e	coiled-coil domain containing 43	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-88252893-7	chr1	88252703	88252903	+	882.7738039999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001281466, intron 31 of 41)	intron (NM_001281466, intron 31 of 41)	16605.0	NR_040291	78605.0	Mm.384762	NR_040291		6430706D22Rik	-	RIKEN cDNA 6430706D22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-12985064-1	chr7	12984964	12985164	+	603.0	f1_c57bl6.idr	3' UTR (NM_001168561, exon 5 of 5)	3' UTR (NM_001168561, exon 5 of 5)	7216.0	NM_001168561	269870.0	Mm.62083	NM_175558	ENSMUSG00000033961	Zfp446	A630035I11Rik|A930031C22|AA120513|AV306632	zinc finger protein 446	protein-coding	0.646711790358493	0.368102745441733	1.4603337290584	0.83442877463649	0.889481685495594	0.370211614063396	0.360766466840912	0.352614916463399	-2.00212535620396	0.26744546694491	1
Merged-chr9-65232667-2	chr9	65232567	65232767	+	702.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177460, intron 4 of 6)	ORR1D2|LTR|ERVL-MaLR	17977.0	NM_177460	214424.0	Mm.31129	NM_177460	ENSMUSG00000032392	Parp16	ARTD15|BC055447|C79952|PARP-16	poly (ADP-ribose) polymerase family, member 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-58157148-4	chr2	58157046	58157246	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139200, intron 1 of 7)	intron (NM_139200, intron 1 of 7)	2976.0	NM_139200	227929.0	Mm.273905	NM_139200	ENSMUSG00000026832	Cytip	A130053M09Rik|AI462064|C80816|Cbp|Cybr|Pscdbp	cytohesin 1 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-59553703-3	chr4	59553596	59553796	+	949.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4332.0	NM_144904	230257.0	Mm.331640	NM_144904	ENSMUSG00000028382	Ptbp3	5830471K22Rik|AA407443|AI462022|AW107884|C86549|Rod1	polypyrimidine tract binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-84083530-2	chr18	84083430	84083630	+	559.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081300, intron 1 of 1)	intron (NM_001081300, intron 1 of 1)	3032.0	NM_001081300	110796.0	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34257842-4	chr17	34257740	34257940	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5387.0	NM_207105	14961.0	Mm.254067	NM_207105	ENSMUSG00000073421	H2-Ab1	AI845868|Abeta|H-2Ab|H2-Ab|I-Abeta|IAb|Ia-2|Ia2|Rmcs1	histocompatibility 2, class II antigen A, beta 1	protein-coding	6.0078933262297	6.1467446167084	6.80057324156499	5.56216256690417	5.93343647622126	6.07240448091898	6.45035582197961	6.15185391344391	-0.0385166833002434	0.885744042570576	0.998431161219273
Merged-chr1-36960315-4	chr1	36960217	36960417	+	918.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20790.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70679199-2	chr8	70679099	70679299	+	550.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_015816)	TTS (NM_015816)	5968.0	NM_015816	50783.0	Mm.248188	NM_015816	ENSMUSG00000031848	Lsm4	-	LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-29210782-2	chr6	29210682	29210882	+	615.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001302934, intron 2 of 14)	intron (NM_001302934, intron 2 of 14)	1515.0	NM_011829	23917.0	Mm.260707	NM_011829	ENSMUSG00000003500	Impdh1	B930086D20Rik|IMPDH-I	inosine monophosphate dehydrogenase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115712590-4	chr11	115712518	115712718	+	996.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4021.0	NM_008163	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-57665063-4	chr14	57664960	57665160	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020506)	promoter-TSS (NM_020506)	-104.0	NM_020506	57258.0	Mm.202747	NM_020506	ENSMUSG00000021952	Xpo4	B430309A01Rik|mKIAA1721	exportin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-106172821-7	chr1	106172749	106172949	+	971.4285890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_133821, exon 1 of 17)	exon (NM_133821, exon 1 of 17)	980.0	NM_133821	98432.0	Mm.24115	NM_133821	ENSMUSG00000044340	Phlpp1	AI836256|Phlpp|Plekhe1|SCOP|mKIAA0606	PH domain and leucine rich repeat protein phosphatase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-63613293-4	chr15	63613175	63613375	+	930.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-133667.0	NR_045279	432958.0	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-15062931-4	chr14	15062859	15063059	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	242144.0	NM_001195229	674895.0	Mm.317563	NM_001034865	ENSMUSG00000042567	Nek10	Gm282	NIMA (never in mitosis gene a)- related kinase 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-40575194-3	chr12	40575101	40575301	+	835.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	L1MB2|LINE|L1	129148.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-74245682-4	chr13	74245579	74245779	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001317351, intron 3 of 9)	intron (NM_001317351, intron 3 of 9)	-36979.0	NM_177333	211446.0	Mm.261859	NM_177333	ENSMUSG00000034152	Exoc3	2810050O03Rik|E430013E20Rik|Sec6|Sec6l1	exocyst complex component 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-13010122-4	chr17	13010028	13010228	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013671, intron 2 of 4)	intron (NM_013671, intron 2 of 4)	2289.0	NM_013671	20656.0	Mm.290876	NM_013671	ENSMUSG00000006818	Sod2	MnSOD|Sod-2	superoxide dismutase 2, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-107066878-4	chr4	107066723	107066923	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175471)	promoter-TSS (NM_175471)	43.0	NM_025500	56280.0	Mm.29517	NM_025500	ENSMUSG00000028622	Mrpl37	2300004O14Rik|AI132596|MRP-L2|Rpml2	mitochondrial ribosomal protein L37	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-43873812-2	chr14	43873712	43873912	+	836.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49556.0	NM_053112	93725.0	Mm.429087	NM_053112	ENSMUSG00000090166	Ear10	Raf2	eosinophil-associated, ribonuclease A family, member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-43506461-3	chr16	43506374	43506574	+	695.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181058, intron 3 of 6)	intron (NM_181058, intron 3 of 6)	-86278.0	NR_046026	626693.0	Mm.447083	NR_046026	ENSMUSG00000085499	Gm15713	-	predicted gene 15713	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-72761095-4	chr12	72760984	72761184	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008910)	promoter-TSS (NM_008910)	-127.0	NM_008910	19042.0	Mm.261045	NM_008910	ENSMUSG00000021096	Ppm1a	2310003C21Rik|2900017D14Rik|AI427932|AU017636|MMPa-2|MPPa-1	protein phosphatase 1A, magnesium dependent, alpha isoform	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16175824-2	chr7	16175724	16175924	+	749.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001277988, intron 1 of 12)	intron (NM_001277988, intron 1 of 12)	429.0	NR_102730	17537.0	Mm.360516	NM_008627	ENSMUSG00000041420	Meis3	AI573393|Mrg2	Meis homeobox 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52565299-4	chr13	52565202	52565402	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7923.0	NR_046069	100040572.0	Mm.278873	NR_046069		Gm2848	-	predicted gene 2848	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6283206-3	chr19	6283148	6283348	+	743.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010119, intron 2 of 4)	intron (NM_010119, intron 2 of 4)	6352.0	NM_010119	13660.0	Mm.30169	NM_010119	ENSMUSG00000024772	Ehd1	AA409636|Past1|RME-1	EH-domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-20784888-4	chr18	20784788	20784988	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38484.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-192736150-3	chr1	192736034	192736234	+	611.988892	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144881, intron 4 of 11)	intron (NM_144881, intron 4 of 11)	35085.0	NM_144881	226861.0	Mm.145857	NM_144881	ENSMUSG00000037375	Hhat	2810432O22Rik|AI462858|AP-2CRE|Skn|Tg(TFAP2A-cre)1Will	hedgehog acyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-60004372-4	chr7	60004232	60004432	+	827.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001082962, intron 2 of 10)	intron (NM_001082962, intron 2 of 10)	867.0	NM_001349694	20646.0	Mm.274995	NM_013670	ENSMUSG00000102252	Snrpn	2410045I01Rik|HCERN3|Peg4|SMN|sm-D|snRNP-N	small nuclear ribonucleoprotein N	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-80945467-4	chr12	80945352	80945552	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347416)	promoter-TSS (NM_001347416)	-47.0	NM_001347416	20384.0	Mm.43331	NM_009159	ENSMUSG00000021134	Srsf5	Sfrs5	serine/arginine-rich splicing factor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-82924998-2	chr18	82924898	82925098	+	640.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177464, intron 1 of 5)	intron (NM_001177464, intron 1 of 5)	-4438.0	NR_033307	75853.0	Mm.420737	NR_033307		4930592I03Rik	-	RIKEN cDNA 4930592I03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-57628762-4	chr10	57628650	57628850	+	898.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3231.0	NM_008863	18768.0	Mm.262135	NM_008863	ENSMUSG00000019876	Pkib	Pkibeta|Prkacn2	protein kinase inhibitor beta, cAMP dependent, testis specific	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-13874337-2	chr8	13874237	13874437	+	761.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_181854, intron 1 of 1)	RLTR13C2|LTR|ERVK	4696.0	NM_181854	101994.0	Mm.289346	NM_181854	ENSMUSG00000047710	Champ1	AA675043|AI116001|D8Ertd457e|D8Ertd569e|Zfp828|Znf828|mKIAA1802	chromosome alignment maintaining phosphoprotein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-25488514-2	chr14	25488414	25488614	+	703.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	29329.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-71362592-3	chr10	71362509	71362709	+	667.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027184, intron 1 of 5)	intron (NM_027184, intron 1 of 5)	14846.0	NM_027184	69718.0	Mm.245867	NM_027184	ENSMUSG00000060733	Ipmk	2410017C19Rik|AA408208|Impk	inositol polyphosphate multikinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115557796-2	chr5	115557691	115557891	+	654.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1676.0	NM_007475	11837.0	Mm.5286	NM_007475	ENSMUSG00000067274	Rplp0	36B4|Arbp|L10E	ribosomal protein, large, P0	protein-coding	-2.18308165884198	-2.15547475440471	-2.16382331017202	-2.1706810624505	-2.18114370519566	-2.15366558754311	-2.03057248461154	-2.16945352807143	0.759018020146679	0.829933115115583	1
Merged-chr14-34615307-1	chr14	34615207	34615407	+	564.0	f0_balb.idr	Intergenic	Intergenic	-15165.0	NM_013887	30044.0	Mm.272060	NM_013887	ENSMUSG00000021799	Opn4	1110007J02Rik|Gm533	opsin 4 (melanopsin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-60662667-5	chr1	60662543	60662743	+	855.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-83745.0	NM_007642	12487.0	Mm.255003	NM_007642	ENSMUSG00000026012	Cd28	-	CD28 antigen	protein-coding	1.72772807029823	1.61319005001783	1.08884053500239	1.06593647766021	2.24986960181578	1.6255031594941	2.26694370021652	2.84693036511494	2.54569530447274	0.0203327593837805	0.181422246222061
Merged-chr2-170185320-2	chr2	170185220	170185420	+	684.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42645.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-90200508-3	chr9	90200457	90200657	+	756.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001326294)	TTS (NM_001326294)	37579.0	NM_001311115	108153.0	Mm.102141	NM_001003911	ENSMUSG00000032363	Adamts7	ADAM-TS7|ADAMTS7B	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-34031536-4	chr11	34031429	34031629	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155520, intron 4 of 4)	intron (NR_155520, intron 4 of 4)	-15399.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-123037081-2	chr8	123036981	123037181	+	758.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 1 of 12)	intron (NM_001081379, intron 1 of 12)	5203.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	0.273205506609974	0.381085487415613	0.00661915427210832	0.903819555279834	0.148909497459194	0.013977520102301	0.00794583511798649	0.00278322075666412	-3.23925814993886	0.119065623735726	1
Merged-chr2-11705793-4	chr2	11705708	11705908	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271501)	promoter-TSS (NM_001271501)	96.0	NM_001271500	16169.0	Mm.200196	NM_008358	ENSMUSG00000023206	Il15ra	AA690181|IL-15RA	interleukin 15 receptor, alpha chain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-49483569-3	chr9	49483426	49483626	+	803.0888669999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172770, intron 2 of 21)	intron (NM_172770, intron 2 of 21)	2699.0	NM_172770	235330.0	Mm.177413	NM_172770	ENSMUSG00000040219	Ttc12	E330017O07Rik	tetratricopeptide repeat domain 12	protein-coding	0.649118970873691	0.306885086744228	0.300758464568155	0.296039533141899	0.657595928707746	0.790233782200604	0.475304553270179	0.816177999076676	2.10654730788896	0.25197809897838	1
Merged-chr13-98807863-4	chr13	98807770	98807970	+	958.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172591, intron 1 of 25)	intron (NM_172591, intron 1 of 25)	7579.0	NM_172591	218503.0	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	1.95612729072244	2.87770808164073	2.12787704135677	2.52469737518178	1.46947983388857	2.89940748150487	1.31605573090724	2.53819066739421	-0.38257005140841	0.69044044826584	0.996647510311426
Merged-chr3-116300867-2	chr3	116300767	116300967	+	660.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001173553, intron 9 of 13)	ORR1D1-int|LTR|ERVL-MaLR	-47383.0	NM_022427	64378.0	Mm.40025	NM_022427	ENSMUSG00000068696	Gpr88	AW061286|Strg	G-protein coupled receptor 88	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-62226003-2	chr10	62225903	62226103	+	614.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_197996, intron 1 of 7)	MTB_Mm|LTR|ERVL-MaLR	5215.0	NM_197996	70423.0	Mm.416781	NM_197996	ENSMUSG00000037031	Tspan15	1110036D12Rik|2700063A19Rik|AW048364|Tm4sf15	tetraspanin 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-52939287-2	chr2	52939187	52939387	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	81419.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-8689474-4	chr8	8689319	8689519	+	863.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_106114)	TTS (NR_106114)	743.0	NR_106114	102465762.0		NR_106114	ENSMUSG00000098917	Mir7654	Gm27748|mmu-mir-7654	microRNA 7654	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-69122815-2	chr2	69122715	69122915	+	855.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12985.0	NM_181547	329416.0	Mm.90047	NM_181547	ENSMUSG00000034738	Nostrin	Daip2|mDaIP2	nitric oxide synthase trafficker	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150240225-4	chr4	150240083	150240283	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023119, intron 2 of 11)	intron (NM_023119, intron 2 of 11)	2859.0	NM_001025388	433182.0	Mm.70666	NM_001025388	ENSMUSG00000059040	Eno1b	EG433182|Eno1|Gm5506	enolase 1B, retrotransposed	protein-coding	2.27294578520412	1.63483245794315	2.46566752021539	1.31547274501393	2.46405146106992	2.20078935958869	2.67150585428024	2.40825528794832	1.01659057461338	0.272981609389606	0.776472717058016
Merged-chr17-56434554-2	chr17	56434454	56434654	+	668.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001252456, exon 10 of 29)	exon (NM_001252456, exon 10 of 29)	-15645.0	NR_105943	102465590.0		NR_105943	ENSMUSG00000098339	Mir6977	Gm27922|mmu-mir-6977	microRNA 6977	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-49825137-2	chr18	49825037	49825237	+	650.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-7181.0	NR_045386	76609.0	Mm.396238	NR_045386	ENSMUSG00000100134	1700065O20Rik	-	RIKEN cDNA 1700065O20 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-30803200-4	chr10	30803036	30803236	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001358841, exon 1 of 16)	5' UTR (NM_001358841, exon 1 of 16)	190.0	NM_001358841	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127993296-2	chr7	127993196	127993396	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023258, intron 1 of 2)	intron (NM_023258, intron 1 of 2)	571.0	NM_023258	66824.0	Mm.24163	NM_023258	ENSMUSG00000030793	Pycard	9130417A21Rik|Asc|CARD5|TMS-1|TNS1|masc	PYD and CARD domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-35082037-2	chr7	35081937	35082137	+	724.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ZP3AR|Satellite|Satellite	-25471.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28927368-2	chr17	28927268	28927468	+	767.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12044.0	NM_172450	207819.0	Mm.248931	NM_172450	ENSMUSG00000048905	4930539E08Rik	9130014G02	RIKEN cDNA 4930539E08 gene	protein-coding	-1.84354474832578	-1.81325489144778	-1.53416061964661	-1.82993901100912	-1.8414184563789	-1.81126990231468	-1.82034119297928	-1.82859217979378	-1.52252619601533	0.665276690233728	1
Merged-chr3-136341755-2	chr3	136341655	136341855	+	580.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1C|Other|Other	-15689.0	NM_001033350	242248.0	Mm.30832	NM_001033350	ENSMUSG00000037922	Bank1	A530094C12Rik|AI451642|AVIEF|BANK	B cell scaffold protein with ankyrin repeats 1	protein-coding	-0.884151943040017	-0.86624766296593	-0.874346483115882	-0.877999885265216	-0.883229761593409	-0.862865047594633	0.225856448367219	-0.877358843395171	3.5762970005776	0.2292649794022	1
Merged-chr10-24635633-4	chr10	24635534	24635734	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	40192.0	NM_010217	14219.0	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-41737744-4	chr4	41737644	41737844	+	918.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001286551)	TTS (NM_001286551)	3615.0	NM_001286540	18391.0	Mm.425181	NM_011014	ENSMUSG00000036078	Sigmar1	Oprs1|Sig1R|sigma1R	sigma non-opioid intracellular receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80387944-4	chr7	80387852	80388052	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010194)	promoter-TSS (NM_010194)	-6.0	NM_010194	14159.0	Mm.48757	NM_010194	ENSMUSG00000053158	Fes	AI586313|BB137047|FPS|c-fes	feline sarcoma oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-66695575-2	chr1	66695475	66695675	+	652.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_175510, exon 65 of 65)	exon (NM_175510, exon 65 of 65)	-5256.0	NM_025683	66646.0	Mm.240912	NM_025683	ENSMUSG00000026005	Rpe	2810429B02Rik|5730518J08Rik	ribulose-5-phosphate-3-epimerase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-64704707-4	chr9	64704614	64704814	+	991.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001134399, intron 23 of 24)	intron (NM_001134399, intron 23 of 24)	33042.0	NM_017382	53869.0	Mm.1387	NM_017382	ENSMUSG00000004771	Rab11a	-	RAB11A, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-55863573-4	chr16	55863467	55863667	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001134457, intron 3 of 5)	intron (NM_001134457, intron 3 of 5)	-24926.0	NM_001159395	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-104218133-1	chr7	104218033	104218233	+	552.0	f0_balb.idr	promoter-TSS (NM_001013616)	promoter-TSS (NM_001013616)	-662.0	NM_001013616	94088.0	Mm.274843	NM_001013616	ENSMUSG00000072244	Trim6	C430046K18Rik|D7Ertd684e	tripartite motif-containing 6	protein-coding	2.02007085699021	1.24767635541516	2.29409456107153	2.02176397894205	2.21558786837261	1.25323745870886	2.31253018699323	2.03221487978556	0.170064332775356	0.872145152785201	0.998431161219273
Merged-chr11-95849466-2	chr11	95849366	95849566	+	751.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	6221.0	NM_001284397	14710.0	Mm.46299	NM_023121	ENSMUSG00000038811	Gngt2	AV096488	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-109747075-2	chr13	109746975	109747175	+	615.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011056, intron 4 of 16)	ORR1A4|LTR|ERVL-MaLR	-156734.0	NR_035442	100316683.0		NR_035442	ENSMUSG00000084651	Mir1904	Mirn1904|mmu-mir-1904	microRNA 1904	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-24461226-4	chr1	24461130	24461330	+	936.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007733, intron 12 of 50)	intron (NM_007733, intron 12 of 50)	126207.0	NM_007733	12823.0	Mm.329196	NM_007733	ENSMUSG00000026141	Col19a1	-	collagen, type XIX, alpha 1	protein-coding	2.75821573295144	2.05531936691902	1.83607172396816	2.26787776187894	2.25483555893278	1.24891671702757	2.13192634246185	1.19535324685016	-1.16980834362313	0.26435662268607	0.766617167012763
Merged-chr13-8644993-4	chr13	8644897	8645097	+	921.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110345, intron 3 of 10)	MIRb|SINE|MIR	226047.0	NM_001039389	207615.0	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-6142211-3	chr17	6142128	6142328	+	996.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054040, intron 1 of 13)	intron (NM_054040, intron 1 of 13)	4080.0	NM_054040	68842.0	Mm.449307	NM_054040	ENSMUSG00000034377	Tulp4	1110057P05Rik|2210038L17Rik|Tusp	tubby like protein 4	protein-coding	1.94839855263147	0.976875826133723	1.55615223524839	0.939323538553948	2.30803179951719	0.981523061071745	2.23763331993412	1.35681146260977	1.20521446427079	0.350793297869712	0.851344470809322
Merged-chr8-126497757-4	chr8	126497652	126497852	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22687.0	NM_001159907	212728.0	Mm.482479	NM_001159907	ENSMUSG00000090290	Tarbp1	Gm17296|Gm179	TAR RNA binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-62956870-3	chr13	62956812	62957012	+	659.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A1|LTR|ERVL-MaLR	-7981.0	NM_001289926	72061.0	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-78434935-2	chr17	78434835	78435035	+	860.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1I|LTR|ERVL-MaLR	-16783.0	NM_001285940	225020.0	Mm.236835	NM_199448	ENSMUSG00000056121	Fez2	9030616F16|D17Ertd315e	fasciculation and elongation protein zeta 2 (zygin II)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-79086609-2	chr11	79086509	79086709	+	609.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013571, intron 1 of 17)	intron (NM_013571, intron 1 of 17)	-26773.0	NM_001348207	16706.0	Mm.4745	NM_013571	ENSMUSG00000018334	Ksr1	AW492498|B-KSR1|D11Bhm183e|D11Bhm184e|Ksr|RSU2|hb|mKSR1	kinase suppressor of ras 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-85262322-1	chr16	85262222	85262422	+	797.666687	f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-88615.0	NM_001198826	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	2.67784333313285	4.06790512975934	3.13679239000169	4.0525369428778	1.29901216731695	2.31170397066412	1.44487949333007	3.5185413667646	-1.84054161973208	0.176077911643852	0.645786463389933
Merged-chr1-53774206-4	chr1	53774125	53774325	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133810, intron 2 of 7)	intron (NM_133810, intron 2 of 7)	10990.0	NM_133810	98267.0	Mm.25559	NM_133810	ENSMUSG00000026094	Stk17b	3110009A03Rik|AI120141|Drak2	serine/threonine kinase 17b (apoptosis-inducing)	protein-coding	3.58329271120252	2.84320330569356	2.97031599236675	2.88568502836692	2.75828302652	1.67149668255723	3.55716647047054	3.08671968867339	-0.298250988560182	0.683059409942906	0.995882295196263
Merged-chr12-73045513-5	chr12	73045465	73045665	+	781.200012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009189, intron 1 of 1)	CpG	1147.0	NM_009189	20471.0	Mm.4645	NM_009189	ENSMUSG00000051367	Six1	BB138287	sine oculis-related homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-53350762-4	chr11	53350655	53350855	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033565)	promoter-TSS (NM_033565)	-12.0	NM_033565	93736.0	Mm.395281	NM_033565	ENSMUSG00000049470	Aff4	AF5Q31|Alf4|Laf4l|MCEF	AF4/FMR2 family, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-50083126-4	chr18	50083002	50083202	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134131, intron 1 of 1)	intron (NM_134131, intron 1 of 1)	-29440.0	NR_155293	102635912.0	Mm.440627	NR_155293		C030005K06Rik	-	RIKEN cDNA C030005K06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120559896-2	chr8	120559796	120559996	+	718.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145896, intron 2 of 15)	intron (NM_001145896, intron 2 of 15)	21200.0	NR_106159	102466849.0		NR_106159	ENSMUSG00000098280	Mir7687	Gm27573|mmu-mir-7687	microRNA 7687	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116009438-2	chr11	116009338	116009538	+	718.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_016905, intron 5 of 7)	intron (NM_016905, intron 5 of 7)	3281.0	NM_016905	14635.0	Mm.2820	NM_016905	ENSMUSG00000020766	Galk1	AA409894|GALK|Gk|Glk|Glk1	galactokinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-31087622-2	chr6	31087522	31087722	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24529.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-31807335-2	chr13	31807235	31807435	+	741.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_008592, exon 1 of 1)	exon (NM_008592, exon 1 of 1)	689.0	NM_008592	17300.0	Mm.12949	NM_008592	ENSMUSG00000050295	Foxc1	FREAC3|Fkh1|Mf1|Mf4|ch|fkh-1|frkhda	forkhead box C1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-134676285-4	chr5	134676251	134676451	+	958.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010717, intron 2 of 15)	intron (NM_010717, intron 2 of 15)	1897.0	NM_001305875	16885.0	Mm.15409	NM_010717	ENSMUSG00000029674	Limk1	KIZ-1|LIMK-1|Limk	LIM-domain containing, protein kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-81868301-4	chr7	81868238	81868438	+	906.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291282, intron 3 of 9)	intron (NM_001291282, intron 3 of 9)	5651.0	NM_001291282	107769.0	Mm.221412	NM_145375	ENSMUSG00000038623	Tm6sf1	AI428514|BC023123|C630016D09Rik	transmembrane 6 superfamily member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-99564800-6	chr12	99564685	99564885	+	814.777771	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_136760, intron 1 of 3)	intron (NR_136760, intron 1 of 3)	944.0	NR_136760	102639404.0	Mm.396324	NR_136760	ENSMUSG00000097917	Gm26839	-	predicted gene, 26839	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-39576786-4	chr1	39576711	39576911	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033135, intron 1 of 6)	CpG	536.0	NM_001033135	67702.0	Mm.28614	NM_001033135	ENSMUSG00000048234	Rnf149	1600023E10Rik|AV037261|C76763|Gm15832|Greul4	ring finger protein 149	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-12841718-3	chr10	12841571	12841771	+	974.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011682, intron 1 of 73)	B4A|SINE|B4	20064.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	-0.578564498018089	-0.339428504422498	-0.568101554311231	0.480782354454844	-0.577584562455415	-0.561948785728063	-0.566989045929519	-0.571326125454056	-3.71251942122469	0.157608388931322	1
Merged-chr4-117536009-4	chr4	117535897	117536097	+	942.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14327.0	NM_001356404	140546.0	Mm.235891	NM_080469	ENSMUSG00000033423	Eri3	PINT1|Prnpip1	exoribonuclease 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-117479911-4	chr12	117479852	117480052	+	893.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36527.0	NM_175930	217944.0	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152606405-4	chr1	152606293	152606493	+	948.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346119, intron 2 of 17)	L3|LINE|CR1	18824.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-156278857-3	chr2	156278754	156278954	+	970.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172674, intron 9 of 17)	intron (NM_172674, intron 9 of 17)	-33619.0	NM_027585	70873.0	Mm.475234	NM_027585	ENSMUSG00000038085	Cnbd2	4921517L17Rik|5430421B09Rik|Cris	cyclic nucleotide binding domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-45229676-2	chr2	45229576	45229776	+	663.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-112234.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-172550707-4	chr1	172550610	172550810	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040558)	promoter-TSS (NR_040558)	96.0	NR_040558	71319.0	Mm.123774	NR_040558	ENSMUSG00000085184	4933439K11Rik	-	RIKEN cDNA 4933439K11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71448757-4	chr17	71448666	71448866	+	835.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_028887, exon 6 of 48)	exon (NM_028887, exon 6 of 48)	26577.0	NM_028887	74355.0	Mm.194450	NM_028887	ENSMUSG00000024054	Smchd1	4931400A14Rik|AW554188|MommeD1|mKIAA0650	SMC hinge domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-120104661-1	chr2	120104561	120104761	+	562.0	f1_c57bl6.idr	intron (NM_133838, intron 3 of 5)	intron (NM_133838, intron 3 of 5)	49914.0	NM_133838	98878.0	Mm.132226	NM_133838	ENSMUSG00000027293	Ehd4	2210022F10Rik|AI197390|AI846352|AV006278|Past2	EH-domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-70968508-4	chr2	70968409	70968609	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145524, intron 7 of 9)	intron (NM_145524, intron 7 of 9)	49865.0	NM_001110512	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-103073607-4	chr2	103073523	103073723	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019735)	promoter-TSS (NM_019735)	-52.0	NM_001355474	56369.0	Mm.24772	NM_019735	ENSMUSG00000010911	Apip	APIP2|CGI-29|Mmrp19	APAF1 interacting protein	protein-coding	5.11393289396035	5.39694213714743	4.52739359405937	5.52586147543825	5.35046106464379	5.3288225052524	4.32085372999915	5.52522449214774	0.0183328148415169	0.958397446324575	0.998431161219273
Merged-chr19-6874392-2	chr19	6874292	6874492	+	582.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-16181.0	NM_001081291	78317.0	Mm.329596	NM_198008	ENSMUSG00000047810	Ccdc88b	2610041P08Rik|Ccdc88	coiled-coil domain containing 88B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-77915950-2	chr9	77915850	77916050	+	746.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1415.0	NM_134255	68801.0	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-90052393-1	chr7	90052293	90052493	+	908.6666869999999	f0_c57.idr	Intergenic	MLT1F|LTR|ERVL-MaLR	23234.0	NR_110364	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	2.41316317963089	1.66935993852152	1.99852538103555	1.82457787723969	0.947052206894105	2.09416000016477	0.998313436876042	0.977715500837998	-1.90966659325145	0.125802247940024	0.555810952405876
Merged-chr10-117217017-4	chr10	117216912	117217112	+	836.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026570, intron 6 of 6)	intron (NM_026570, intron 6 of 6)	7495.0	NM_026570	64050.0	Mm.233529	NM_026570	ENSMUSG00000020171	Yeats4	4930573H17Rik|B230215M10Rik|GAS41|NuBI-1	YEATS domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139398562-4	chr5	139398456	139398656	+	905.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028469, intron 2 of 4)	intron (NM_028469, intron 2 of 4)	-7831.0	NM_177000	319772.0	Mm.440271	NM_177000	ENSMUSG00000044092	C130050O18Rik	-	RIKEN cDNA C130050O18 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-89069480-3	chr11	89069376	89069576	+	689.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4365.0	NM_001033266	217071.0	Mm.342127	NM_001033266	ENSMUSG00000072553	Gm525	-	predicted gene 525	protein-coding	2.08516792051094	3.06716056527435	2.4488182770647	2.76833277462219	3.0102435308964	2.85336827671169	4.15649535987808	2.78326636555779	1.22288666780599	0.084284229720601	0.445481140170824
Merged-chr10-20818715-1	chr10	20818615	20818815	+	702.0	f0_balb.idr	Intergenic	Intergenic	-93637.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-55329916-4	chr13	55329803	55330003	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016662)	promoter-TSS (NM_016662)	-173.0	NM_016662	17121.0	Mm.20350	NM_016662	ENSMUSG00000021485	Mxd3	4631412E13Rik|Mad3|bHLHc13	Max dimerization protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-11542829-4	chr2	11542735	11542935	+	977.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177758, intron 1 of 14)	B3A|SINE|B2	11094.0	NM_001177758	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-163698268-3	chr2	163698121	163698321	+	949.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011106, intron 1 of 3)	intron (NM_011106, intron 1 of 3)	4184.0	NM_011106	18769.0	Mm.10091	NM_011106	ENSMUSG00000035268	Pkig	PKIgamma	protein kinase inhibitor, gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-108118604-4	chr4	108118516	108118716	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011327)	promoter-TSS (NM_011327)	-69.0	NM_011327	20280.0	Mm.379011	NM_011327	ENSMUSG00000028603	Scp2	AA409774|AA409893|C76618|C79031|NSL-TP|SCP-2|SCP-X|SCPX|ns-LTP	sterol carrier protein 2, liver	protein-coding	4.34734622511553	4.28127079593368	5.03576872817552	4.02349159899101	4.46615809554336	4.81859911074955	4.99944758109817	4.71317759417882	0.353249163742248	0.357034432161587	0.853942173366938
Merged-chr13-113378476-4	chr13	113378402	113378602	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	124342.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-121697716-3	chr11	121697610	121697810	+	914.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4717.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-102010262-2	chr7	102010162	102010362	+	645.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133947, intron 18 of 24)	intron (NM_133947, intron 18 of 24)	7893.0	NM_010531	16068.0	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-56948498-2	chr9	56948398	56948598	+	656.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR22_Mus|LTR|ERVK	-2426.0	NM_178374	66069.0	Mm.220984	NM_178374	ENSMUSG00000055334	Snupn	0610031A09Rik|Rnut1|Snupn1	snurportin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133210542-2	chr4	133210442	133210642	+	796.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008154, exon 2 of 2)	exon (NM_008154, exon 2 of 2)	1994.0	NM_008154	14748.0	Mm.4721	NM_008154	ENSMUSG00000049649	Gpr3	Gpcr20|Gpcr21|Gpcr3	G-protein coupled receptor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-122705200-2	chr7	122705100	122705300	+	580.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019430, intron 1 of 3)	B3|SINE|B2	33456.0	NM_019430	54376.0	Mm.444212	NM_019430	ENSMUSG00000066189	Cacng3	-	calcium channel, voltage-dependent, gamma subunit 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81452885-2	chr10	81452785	81452985	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20246.0	NM_001311127	319586.0	Mm.152689	NM_176954	ENSMUSG00000034818	Celf5	4930565A21Rik|Brunol5	CUGBP, Elav-like family member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-61757281-4	chr14	61757187	61757387	+	929.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74914.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	1.64749330678445	2.59739416690296	1.61558504710947	2.78642150631512	1.31058496316097	2.42058496858266	1.14895131860497	1.75072318564542	-1.2509475705414	0.234855955252094	0.731086761108682
Merged-chr10-41910890-3	chr10	41910788	41910988	+	889.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB3|LINE|L1	23449.0	NM_001013370	140742.0	Mm.139418	NM_001013370	ENSMUSG00000038332	Sesn1	1110002G11Rik|AU044290|Pa26|Sest1	sestrin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-167618547-3	chr1	167618435	167618635	+	776.833374	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159731, intron 1 of 8)	intron (NM_001159731, intron 1 of 8)	270.0	NM_001159731	20183.0	Mm.3475	NM_009107	ENSMUSG00000015843	Rxrg	Nr2b3	retinoid X receptor gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-83100251-3	chr8	83100146	83100346	+	817.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65106.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	4.31469788962884	3.68185186708796	3.45675282655953	3.7041187664648	4.30679894884595	4.2536121989985	4.49631854568809	4.32417511000054	0.684337661807766	0.11868657930199	0.540486429073361
Merged-chr6-43022117-2	chr6	43022017	43022217	+	595.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	66617.0	NM_146656	258650.0	Mm.377613	NM_146656	ENSMUSG00000073110	Olfr444	MOR261-2	olfactory receptor 444	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-87753391-2	chr11	87753291	87753491	+	952.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3473.0	NR_029555	387160.0		NR_029555	ENSMUSG00000105196	Mir142	Mirn142|miR-142|mir-142a|mmu-mir-142|mmu-mir-142a	microRNA 142	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-88828748-2	chr6	88828648	88828848	+	718.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_011844)	TTS (NM_011844)	13187.0	NM_001362152	80283.0	Mm.166858	NM_030251	ENSMUSG00000030083	Abtb1	AI847549|BC003234|BPOZ|EF1ABP	ankyrin repeat and BTB (POZ) domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-104541313-2	chr8	104541213	104541413	+	891.375	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001301165)	promoter-TSS (NM_001301165)	4.0	NM_001301165	12354.0	Mm.129265	NM_053070	ENSMUSG00000031883	Car7	AV343731|Ca7	carbonic anhydrase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-90682071-4	chr5	90681955	90682155	+	990.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41528.0	NM_001310656	73246.0	Mm.30172	NM_028478	ENSMUSG00000029370	Rassf6	1600016B17Rik	Ras association (RalGDS/AF-6) domain family member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-122897184-3	chr4	122897091	122897291	+	689.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	-11115.0	NM_001358036	12331.0	Mm.8687	NM_007598	ENSMUSG00000028656	Cap1	-	CAP, adenylate cyclase-associated protein 1 (yeast)	protein-coding	1.5861137432154	1.6450939464366	0.710768424136025	0.89383233981108	1.24965717150557	0.726199985242662	1.37589421202431	0.702643966292649	-0.909594481139847	0.543971899073859	0.955588703284868
Merged-chr15-73716569-4	chr15	73716492	73716692	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6553.0	NM_001166390	19245.0	Mm.390807	NM_008975	ENSMUSG00000059895	Ptp4a3	AV088979|Prl-3|pPtp4a3	protein tyrosine phosphatase 4a3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135274747-2	chr4	135274647	135274847	+	667.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-1987.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4310041-4	chr19	4309965	4310165	+	873.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3843.0	NM_001290818	110355.0	Mm.254144	NM_130863	ENSMUSG00000024858	Grk2	Adrbk-1|Adrbk1|Bark-1|beta ARK|betaARK1	G protein-coupled receptor kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-53139482-1	chr15	53139382	53139582	+	1000.0	f0_c57.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	206701.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19878144-2	chr7	19878044	19878244	+	567.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_177036, exon 7 of 7)	exon (NM_177036, exon 7 of 7)	9821.0	NM_177036	319930.0	Mm.215839	NM_177036	ENSMUSG00000049848	Ceacam19	C130022P09Rik|CEAL1	carcinoembryonic antigen-related cell adhesion molecule 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-123919029-2	chr4	123918929	123919129	+	764.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_017475, intron 1 of 6)	ID_B1|SINE|B4	1596.0	NM_017475	54170.0	Mm.220922	NM_017475	ENSMUSG00000028646	Rragc	AU041672|Gtr2|RAGC|TIB929|YGR163W	Ras-related GTP binding C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-73138075-2	chr14	73137975	73138175	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-4435.0	NM_001170694	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-92670081-4	chr7	92669974	92670174	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029078)	promoter-TSS (NM_029078)	-162.0	NM_029078	74737.0	Mm.288645	NM_029078	ENSMUSG00000041328	Pcf11	2500001H09Rik|5730417B17Rik|C77803	PCF11 cleavage and polyadenylation factor subunit	protein-coding	6.97861011184232	7.05581065760633	7.19687526915397	7.38653037875647	6.97742934044752	7.16260496380825	7.05585253228636	7.3361094737268	-0.025652200827004	0.879206115929053	0.998431161219273
Merged-chr2-68825578-4	chr2	68825477	68825677	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35864.0	NM_172856	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-123665191-2	chr4	123665091	123665291	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_136925)	promoter-TSS (NR_136925)	-690.0	NR_136925	102633214.0	Mm.399387	NR_136925		Gm12925	-	predicted gene 12925	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-145792618-3	chr6	145792521	145792721	+	982.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15762.0	NM_027760	71323.0	Mm.158669	NM_027760	ENSMUSG00000030259	Rassf8	5133400D11Rik|AA815821|AW123240|Hoj1|mHoj-1	Ras association (RalGDS/AF-6) domain family (N-terminal) member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-142353240-2	chr6	142353140	142353340	+	545.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_183165, intron 4 of 11)	intron (NM_183165, intron 4 of 11)	7543.0	NM_183165	232491.0	Mm.490474	NM_183165	ENSMUSG00000041671	Pyroxd1	-	pyridine nucleotide-disulphide oxidoreductase domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-91124069-4	chr10	91123959	91124159	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133668)	promoter-TSS (NM_133668)	-96.0	NM_133668	18674.0	Mm.298	NM_133668	ENSMUSG00000061904	Slc25a3	5730556H19Rik|PTP|Phc	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-118507292-4	chr2	118507163	118507363	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Charlie2b|DNA|hAT-Charlie	-27567.0	NM_009273	20813.0	Mm.363404	NM_009273	ENSMUSG00000009549	Srp14	14kDa|AW536328	signal recognition particle 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30600565-2	chr2	30600465	30600665	+	778.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_030137, intron 1 of 1)	intron (NM_030137, intron 1 of 1)	5521.0	NM_030137	78617.0	Mm.40413	NM_030137	ENSMUSG00000047363	Cstad	9530039B02Rik	CSA-conditional, T cell activation-dependent protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-32282516-2	chr12	32282416	32282616	+	584.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73867.0	NM_001146200	30955.0	Mm.101369	NM_020272	ENSMUSG00000020573	Pik3cg	5830428L06Rik|PI3Kgamma|p110gamma	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69658142-2	chr11	69658042	69658242	+	840.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301711, intron 3 of 6)	intron (NM_001301711, intron 3 of 6)	3105.0	NM_009235	20670.0	Mm.347499	NM_009235	ENSMUSG00000041287	Sox15	-	SRY (sex determining region Y)-box 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41242187-4	chr19	41242109	41242309	+	863.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133352, intron 5 of 14)	intron (NM_133352, intron 5 of 14)	21795.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120288639-2	chr8	120288539	120288739	+	871.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60409.0	NR_110496	434353.0	Mm.411793	NR_110496	ENSMUSG00000097960	A330074K22Rik	-	RIKEN cDNA A330074K22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115245506-2	chr11	115245406	115245606	+	669.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001033393, exon 10 of 10)	3' UTR (NM_001033393, exon 10 of 10)	21737.0	NM_010350	14813.0	Mm.39090	NM_010350	ENSMUSG00000020734	Grin2c	GluN2C|NMDAR2C|NR2C	glutamate receptor, ionotropic, NMDA2C (epsilon 3)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-81703455-4	chr17	81703337	81703537	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 1 of 8)	intron (NR_104580, intron 1 of 8)	34950.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120262661-2	chr11	120262560	120262760	+	947.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_198423, intron 3 of 27)	intron (NM_198423, intron 3 of 27)	29713.0	NM_198423	268515.0	Mm.309498	NM_198423	ENSMUSG00000039741	Bahcc1	B930044J06|BC060615	BAH domain and coiled-coil containing 1	protein-coding	1.69253252864619	3.43959152111121	1.66215924854815	1.12407984812849	2.11000095206373	1.94083487260966	1.67641091657415	2.5378051067686	-0.506848637269397	0.623334918105086	0.980259659844413
Merged-chr3-149323509-3	chr3	149323448	149323648	+	810.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48811.0	NR_040591	381482.0	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-4759815-2	chr13	4759712	4759912	+	616.5	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-150648.0	NM_018859	56043.0	Mm.251908	NM_018859	ENSMUSG00000045410	Akr1e1	1810061I10Rik|Akr1e2	aldo-keto reductase family 1, member E1	protein-coding	0.832832182386033	0.392439047549656	0.385753226852169	0.380598310291829	0.638246761285523	0.744465668527133	0.838192354223431	0.907021384133103	1.72368359679153	0.326206469757723	1
Merged-chr2-45120292-2	chr2	45120192	45120392	+	839.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	-2850.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-6546707-5	chr11	6546554	6546754	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001190343)	promoter-TSS (NM_001190343)	-233.0	NM_146014	216527.0	Mm.221271	NM_146014	ENSMUSG00000000378	Ccm2	BC029157	cerebral cavernous malformation 2	protein-coding	5.92583418406351	5.4417188455318	6.46155963576054	5.11151176590758	5.89889654339136	5.837195531444	6.48486576182152	4.82463308948602	0.0516841330758791	0.882810246416781	0.998431161219273
Merged-chr19-12009678-4	chr19	12009565	12009765	+	915.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27075.0	NM_146680	258675.0	Mm.271517	NM_146680	ENSMUSG00000067529	Olfr1423	MOR239-3	olfactory receptor 1423	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-138254875-2	chr5	138254775	138254975	+	765.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081108)	promoter-TSS (NM_001081108)	-607.0	NM_001081108	66096.0	Mm.206901	NM_001081108	ENSMUSG00000050552	Lamtor4	0910001L09Rik|AV006840	late endosomal/lysosomal adaptor, MAPK and MTOR activator 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-7598913-2	chr10	7598813	7599013	+	757.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359742, intron 3 of 5)	intron (NM_001359742, intron 3 of 5)	9113.0	NM_001359743	237253.0	Mm.206759	NM_172784	ENSMUSG00000019796	Lrp11	1700034J19Rik|6330533B21|9830160H19Rik	low density lipoprotein receptor-related protein 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117338391-4	chr8	117338275	117338475	+	835.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	ID_B1|SINE|B4	-10795.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-79275691-2	chr7	79275591	79275791	+	700.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_018811, intron 1 of 10)	intron (NM_018811, intron 1 of 10)	2425.0	NM_018811	54608.0	Mm.365490	NM_018811	ENSMUSG00000039202	Abhd2	2210009N18Rik|LABH2|Labh-2	abhydrolase domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-54765625-3	chr14	54765564	54765764	+	830.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016972, intron 1 of 10)	intron (NM_016972, intron 1 of 10)	16222.0	NM_016972	50934.0	Mm.276831	NM_016972	ENSMUSG00000022180	Slc7a8	AA408822|LAT2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	protein-coding	0.602588642441489	0.64731333248376	0.633021610454074	0.621763725417972	1.31778583977653	1.25951697362288	1.46361390155281	1.84177177880448	4.97984559365463	0.00149430849234953	0.0269828465382746
Merged-chr6-28899723-2	chr6	28899623	28899823	+	623.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-67976.0	NM_138682	192198.0	Mm.443660	NM_138682	ENSMUSG00000049939	Lrrc4	MBAG1|NGL-2|NGL2|NLG-2|Nag14	leucine rich repeat containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-137864960-4	chr4	137864861	137865061	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199307, intron 1 of 19)	intron (NM_199307, intron 1 of 19)	2724.0	NM_199307	230857.0	Mm.401062	NM_199307	ENSMUSG00000057530	Ece1	AW322500|ECE-1|ECE-1a|ECE-1b|ECE-1d	endothelin converting enzyme 1	protein-coding	2.02891079451485	3.67164985810836	2.92494820421918	2.83372294439705	4.16147441290436	3.51918877050172	3.99146970105966	4.46401553634577	1.65745230839105	0.0046069953846838	0.0629552740608613
Merged-chr14-66264905-4	chr14	66264923	66265123	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	16029.0	NM_001162366	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-82670430-4	chr10	82670330	82670530	+	994.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029102, intron 2 of 9)	intron (NM_029102, intron 2 of 9)	20220.0	NM_029102	74782.0	Mm.191281	NM_029102	ENSMUSG00000020251	Glt8d2	1110021D20Rik	glycosyltransferase 8 domain containing 2	protein-coding	4.03728927072256	4.38739982336465	4.76263489086746	4.64462270183784	3.49276863182729	3.92744372281278	4.09409179978663	4.41265535931729	-0.611481093135803	0.154714753749933	0.610069793551649
Merged-chr4-105317023-4	chr4	105316914	105317114	+	940.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	159667.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25811546-6	chr7	25811409	25811609	+	792.611084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028775, intron 3 of 8)	intron (NM_028775, intron 3 of 8)	5021.0	NM_028775	74134.0	Mm.275188	NM_028775	ENSMUSG00000040703	Cyp2s1	1200011C15Rik|AU041727|C79779	cytochrome P450, family 2, subfamily s, polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-142889924-3	chr2	142889820	142890020	+	773.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355123, intron 1 of 26)	intron (NM_001355123, intron 1 of 26)	11544.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-39861279-2	chr15	39861179	39861379	+	620.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3809.0	NM_022722	64705.0	Mm.275974	NM_022722	ENSMUSG00000022304	Dpys	1200017I10Rik|1300004I01Rik|DHP|DHPase	dihydropyrimidinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-5203944-4	chr16	5203842	5204042	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013796)	promoter-TSS (NM_013796)	70.0	NM_013796	27426.0	Mm.215641	NM_013796	ENSMUSG00000023143	Nagpa	AI596180|UCE	N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-132564992-4	chr7	132564880	132565080	+	906.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016978, intron 4 of 9)	intron (NM_016978, intron 4 of 9)	11418.0	NM_016978	18242.0	Mm.13694	NM_016978	ENSMUSG00000030934	Oat	AI194874|rhg	ornithine aminotransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-77265600-3	chr5	77265502	77265702	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_011263, exon 1 of 4)	5' UTR (NM_011263, exon 1 of 4)	108.0	NM_011263	19712.0	Mm.28840	NM_011263	ENSMUSG00000029249	Rest	2610008J04Rik|AA407358|NRSF|REST4	RE1-silencing transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-69575734-1	chr12	69575634	69575834	+	840.0	f1_balb.idr	Intergenic	PB1D10|SINE|Alu	7294.0	NM_001033236	207965.0	Mm.102487	NM_001033236	ENSMUSG00000049882	Vcpkmt	Gm71|Mettl21d|Mettl221d|VCP-KMT	valosin containing protein lysine (K) methyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-7875923-2	chr9	7875823	7876023	+	604.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	-2753.0	NM_007464	11796.0	Mm.2026	NM_007464	ENSMUSG00000032000	Birc3	AW107670|Api1|Api2|Birc2|C-IAP2|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF49|cIAP-1|cIAP-2|cIAP1|cIAP2	baculoviral IAP repeat-containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-106200102-4	chr9	106200012	106200212	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026447)	promoter-TSS (NM_026447)	-879.0	NM_026447	67905.0	Mm.23018	NM_026447	ENSMUSG00000020253	Ppm1m	2810423O19Rik|AW610647|C77250|PP2Ceta	protein phosphatase 1M	protein-coding	2.80536038962462	3.57805972637315	2.68951413549911	3.4387510512513	2.82879004166771	3.16877325047424	2.8408449995832	3.31540192104946	-0.222057522716706	0.724250354968025	0.998431161219273
Merged-chr1-136116370-4	chr1	136116260	136116460	+	847.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081023, intron 40 of 43)	intron (NM_001081023, intron 40 of 43)	14823.0	NR_046170	329253.0	Mm.487858	NR_046167	ENSMUSG00000086264	Gm15850	6530439I21	predicted gene 15850	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-41474315-2	chr10	41474215	41474415	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1999.0	NM_001164433	171580.0	Mm.290431	NM_138315	ENSMUSG00000019823	Mical1	MICAL|MICAL-1|Nical	microtubule associated monooxygenase, calponin and LIM domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-46151831-1	chr6	46151731	46151931	+	550.0	f0_balb.idr	intron (NM_001004357, intron 8 of 23)	L1M5|LINE|L1	1091770.0	NM_001004357	66797.0	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	-0.103118909468177	-0.0874274720234904	-0.0925663225178934	0.0686177973880682	0.0448762680819365	0.538062439538755	0.488050089824803	-0.0958393147479031	3.0577475669482	0.159055853716744	1
Merged-chr10-127045460-2	chr10	127045360	127045560	+	654.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_010792)	TTS (NM_010792)	-2786.0	NM_010009	13115.0	Mm.6216	NM_010009	ENSMUSG00000006724	Cyp27b1	Cp2b|Cyp1|Cyp27b|Cyp40|P450c1|Pddr|Vdd1|Vddr|VddrI|Vdr	cytochrome P450, family 27, subfamily b, polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-106951756-1	chr4	106951656	106951856	+	703.0	f1_c57bl6.idr	intron (NM_001355532, intron 1 of 14)	intron (NM_001355532, intron 1 of 14)	28571.0	NM_001355532	72475.0	Mm.195635	NM_023672	ENSMUSG00000061887	Ssbp3	2610021L12Rik|2610200M23Rik|5730488C10Rik|AI854733|AW551939|LAST|SSDP1	single-stranded DNA binding protein 3	protein-coding	2.671781964128	3.96186650798845	2.58263672621603	2.7265165799403	2.38805846166115	2.40753249611811	1.42935340242407	2.38939096378282	-1.73561677886499	0.0319315744174429	0.247627052875337
Merged-chr7-123291867-2	chr7	123291767	123291967	+	890.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001316713, intron 17 of 19)	intron (NM_001316713, intron 17 of 19)	77001.0	NM_146198	233836.0	Mm.211838	NM_146198	ENSMUSG00000030769	Slc5a11	2010013B02Rik|Kst1|RKST2|SMIT2|Slc5a10	solute carrier family 5 (sodium/glucose cotransporter), member 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44582648-4	chr9	44582553	44582753	+	975.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22239.0	NM_001110826	13209.0	Mm.267061	NM_007841	ENSMUSG00000032097	Ddx6	1110001P04Rik|C430015D01Rik|E230023J21Rik|HLR2|mRCK/P54|p54|rck	DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-32146677-4	chr12	32146580	32146780	+	803.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61658.0	NM_001146201	30955.0	Mm.101369	NM_020272	ENSMUSG00000020573	Pik3cg	5830428L06Rik|PI3Kgamma|p110gamma	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-29322942-4	chr6	29322876	29323076	+	785.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207258, intron 2 of 6)	ORR1E|LTR|ERVL-MaLR	3836.0	NM_001289664	330277.0	Mm.87624	NM_207258	ENSMUSG00000039742	Fam71f1	GARI-L1|Gm764|NYD-SP18	family with sequence similarity 71, member F1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-105751641-4	chr7	105751554	105751754	+	971.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009906, exon 3 of 13)	exon (NM_009906, exon 3 of 13)	581.0	NM_009906	12751.0	Mm.20837	NM_009906	ENSMUSG00000030894	Tpp1	Cln2|LPIC|TPP-1|TPP-I	tripeptidyl peptidase I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-88921641-4	chr15	88921500	88921700	+	767.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357736, intron 8 of 11)	intron (NM_001357736, intron 8 of 11)	32818.0	NM_001357736	239591.0	Mm.86807	NM_172818	ENSMUSG00000022388	Ttll8	1700019P01Rik|4933401B17	tubulin tyrosine ligase-like family, member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-5801959-2	chr13	5801859	5802059	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	56133.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-147911717-1	chr4	147911617	147911817	+	557.0	f1_balb.idr	intron (NM_011122, intron 18 of 18)	B1_Mur2|SINE|Alu	-6808.0	NM_001285921	170731.0	Mm.154312	NM_133201	ENSMUSG00000029020	Mfn2	D630023P19Rik|Fzo	mitofusin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115071126-3	chr11	115071031	115071231	+	929.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-9092.0	NM_172050	217306.0	Mm.222667	NM_172050	ENSMUSG00000048498	Cd300e	BC034097|CLM2|Cd300le|TREM5	CD300E molecule	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-32892076-2	chr17	32891976	32892176	+	709.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207245)	promoter-TSS (NM_207245)	-473.0	NM_207245	240066.0	Mm.26636	NM_207245	ENSMUSG00000095325	Zfp870	AI173952	zinc finger protein 870	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-34118648-1	chr18	34118548	34118748	+	591.0	f1_c57bl6.idr	Intergenic	MER5B|DNA|hAT-Charlie	-102336.0	NM_007462	11789.0	Mm.384171	NM_007462	ENSMUSG00000005871	Apc	AI047805|AU020952|AW124434|CC1|Min|mAPC	adenomatosis polyposis coli	protein-coding	1.51496641735332	0.776323737654709	0.956646776756778	1.21685470214545	1.26799888580663	1.44318945000683	0.767652540173812	1.22355257345686	0.189508609856596	0.892270050313695	0.998431161219273
Merged-chr13-23763654-4	chr13	23763552	23763752	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030609)	promoter-TSS (NM_030609)	-16.0	NM_030609	80838.0	Mm.480242	NM_030609	ENSMUSG00000049539	Hist1h1a	H1.1|H1a|H1f1|H1var3	histone cluster 1, H1a	protein-coding	3.88499304525615	4.14498483768716	4.30162344647275	3.61687683293468	4.16367941559878	4.03424179047605	3.90475388105057	4.1030919131652	0.0686663119343816	0.875673882008544	0.998431161219273
Merged-chr7-16876535-2	chr7	16876435	16876635	+	893.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081655, intron 1 of 3)	intron (NM_001081655, intron 1 of 3)	1218.0	NM_001081655	629378.0	Mm.491123	NM_001081655	ENSMUSG00000078794	Dact3	EG666671|naa-3	dishevelled-binding antagonist of beta-catenin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-151932133-2	chr4	151932033	151932233	+	549.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1587.0	NM_172704	230935.0	Mm.21353	NM_172704	ENSMUSG00000039768	Dnajc11	E030019A03Rik	DnaJ heat shock protein family (Hsp40) member C11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125097478-1	chr6	125097378	125097578	+	797.0	f1_c57bl6.idr	TTS (NR_106012)	TTS (NR_106012)	454.0	NR_106012	102466272.0		NR_106012	ENSMUSG00000098762	Mir7045	Gm27758|mmu-mir-7045	microRNA 7045	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-78073943-4	chr9	78073835	78074035	+	813.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	21977.0	NM_008103	14531.0	Mm.1400	NM_008103	ENSMUSG00000023333	Gcm1	GCMa|Gcm-rs2|Gcm1-rs1|glide	glial cells missing homolog 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-144944163-1	chr7	144944063	144944263	+	555.0	f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-4238.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	1.46666338035922	1.90937633516375	1.03083609534935	1.78608425355449	1.97162371711491	1.92450483557773	1.03500365930754	1.55103377749448	0.263380693849269	0.82580650975876	0.998431161219273
Merged-chr6-47961390-1	chr6	47961290	47961490	+	745.0	f1_c57bl6.idr	intron (NM_178898, intron 3 of 4)	AT_rich|Low_complexity|Low_complexity	8000.0	NM_178898	101197.0	Mm.241063	NM_178898	ENSMUSG00000045466	Zfp956	AI894139	zinc finger protein 956	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101442785-2	chr11	101442685	101442885	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_011289, exon 2 of 5)	exon (NM_011289, exon 2 of 5)	540.0	NM_011289	19942.0	Mm.340658	NM_011289	ENSMUSG00000063316	Rpl27	-	ribosomal protein L27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-83632035-4	chr17	83631940	83632140	+	858.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153512)	promoter-TSS (NM_153512)	-145.0	NM_153512	225030.0	Mm.223506	NM_153512	ENSMUSG00000045053	Kcng3	KV6.3|Kv10.1a|Kv10.1b	potassium voltage-gated channel, subfamily G, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-75921601-4	chr15	75921485	75921685	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025412)	promoter-TSS (NM_025412)	-25.0	NM_025412	66194.0	Mm.250599	NM_025412	ENSMUSG00000022571	Pycrl	1110058B13Rik|2700073G24Rik|Pycr3	pyrroline-5-carboxylate reductase-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-156473199-4	chr1	156473044	156473244	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009230, intron 1 of 15)	intron (NM_009230, intron 1 of 15)	1184.0	NM_009230	20652.0	Mm.28099	NM_009230	ENSMUSG00000026600	Soat1	8430426K15Rik|ACAT-1|AW550831|Acact|ald|hid	sterol O-acyltransferase 1	protein-coding	4.70477716212774	5.01618244168661	4.54166560798332	4.9992236422498	4.99376529828834	5.34454703480709	4.72380121119487	4.49267286208175	0.113722427140985	0.742391769682082	0.998431161219273
Merged-chr1-46921749-4	chr1	46921634	46921834	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356417, intron 1 of 10)	intron (NM_001356417, intron 1 of 10)	4042.0	NM_001356417	227059.0	Mm.233889	NM_172653	ENSMUSG00000025986	Slc39a10	2900042E17Rik|5430433I10|Zip10|mKIAA1265	solute carrier family 39 (zinc transporter), member 10	protein-coding	2.46642786484508	3.43866704849353	3.67951010069061	2.10937228140045	3.09354134442439	3.37559765115169	3.17224282295312	3.47123341558517	0.336996183783866	0.612432575306714	0.976337921990342
Merged-chr12-104233378-4	chr12	104233288	104233488	+	878.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009251, intron 3 of 6)	RMER16|LTR|ERVK	-2759.0	NM_001353612	20715.0	Mm.312628	NM_009251		Serpina3g	2A2|AI119734|Spi2-1|Spi2/eb.1|Spi2A|spi2	serine (or cysteine) peptidase inhibitor, clade A, member 3G	protein-coding	4.3677999392488	3.82517382461203	3.85203745684834	4.57948075477419	3.5007570478055	3.56706376071305	5.20760981566021	2.67592300014088	-0.144680084869177	0.803368212822271	0.998431161219273
Merged-chr9-106362153-1	chr9	106362053	106362253	+	562.0	f0_c57.idr	Intergenic	RSINE1|SINE|B4	-6479.0	NM_153459	235584.0	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	3.20395948898076	3.45464190205869	3.34055630638963	2.94743050511893	2.00729423251424	1.52484173547924	2.75992086745311	1.92764311625315	-2.15344899910879	0.00489157615868241	0.0658179841190192
Merged-chr13-117602404-4	chr13	117602318	117602518	+	848.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010408)	promoter-TSS (NM_010408)	98.0	NM_010408	15165.0	Mm.343429	NM_010408	ENSMUSG00000021730	Hcn1	Bcng1|C630013B14Rik|HAC2	hyperpolarization-activated, cyclic nucleotide-gated K+ 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-122117170-2	chr2	122117063	122117263	+	658.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145531, intron 1 of 39)	intron (NM_145531, intron 1 of 39)	1223.0	NM_145531	214585.0	Mm.222303	NM_145531	ENSMUSG00000033396	Spg11	6030465E24Rik|A330015I11|C530005A01Rik	SPG11, spatacsin vesicle trafficking associated	protein-coding	0.760025596621577	1.24260587959388	0.134944680445865	0.128502410938115	0.291326422242915	0.145052793187782	0.136775026306455	0.323688452720479	-2.76954855310285	0.163940018394714	1
Merged-chr5-99336056-1	chr5	99335956	99336156	+	675.0	f0_c57.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-83129.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-7264973-3	chr10	7264876	7265076	+	959.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52739.0	NM_172546	215748.0	Mm.37984	NM_172546	ENSMUSG00000015202	Cnksr3	6820402C05|BC024086|Magi1	Cnksr family member 3	protein-coding	2.46720616670319	1.47897874744318	1.72478933140027	1.34700926518532	3.85611486918613	3.5373944096992	4.42424512319691	4.66094661592705	4.0382406708703	1.66794166650118e-07	1.3582781073313e-05
Merged-chr1-40475898-3	chr1	40475794	40475994	+	766.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161842, intron 4 of 9)	intron (NM_001161842, intron 4 of 9)	9888.0	NM_008365	16182.0	Mm.253664	NM_008365	ENSMUSG00000026070	Il18r1	Il18ralpha|Il1rrp	interleukin 18 receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-76419418-3	chr11	76419334	76419534	+	593.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346670, intron 21 of 21)	intron (NM_001346670, intron 21 of 21)	12291.0	NM_019818	56322.0	Mm.18803	NM_019818	ENSMUSG00000020843	Timm22	Tim22	translocase of inner mitochondrial membrane 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100930857-2	chr7	100930757	100930957	+	979.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081116, exon 1 of 21)	exon (NM_001081116, exon 1 of 21)	1304.0	NM_001081116	207212.0	Mm.29954	NM_001081116	ENSMUSG00000032875	Arhgef17	8030463K16|AI428794|AW558066|BC035332|mKIAA0337	Rho guanine nucleotide exchange factor (GEF) 17	protein-coding	-1.3681463318974	-1.33624156493372	-1.34650167276047	-0.80669348975676	-1.36769697821496	-1.33401815676661	-1.34417900924365	-1.3534210303531	-2.3580830592467	0.49586638340111	1
Merged-chr1-35971610-4	chr1	35971517	35971717	+	952.0125119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-96783.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-11462050-4	chr11	11461933	11462133	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001185153, intron 1 of 7)	CpG	386.0	NM_015785	53604.0	Mm.9500	NM_015785	ENSMUSG00000020193	Zpbp	4930486K01Rik|Iam38|Sp38	zona pellucida binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-30457978-4	chr14	30457862	30458062	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_131095)	promoter-TSS (NR_131095)	-74.0	NR_131095	77710.0	Mm.410773	NR_131095		4831407H17Rik	-	RIKEN cDNA 4831407H17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-62725153-3	chr1	62725002	62725202	+	931.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077404, intron 2 of 16)	intron (NM_001077404, intron 2 of 16)	21785.0	NM_001077407	18187.0	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30784589-6	chr2	30784470	30784670	+	959.522217	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17167.0	NM_198000	73598.0	Mm.34166	NM_198000	ENSMUSG00000044320	1700001O22Rik	1700113K14Rik|4930549G18Rik	RIKEN cDNA 1700001O22 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-21767177-4	chr4	21767072	21767272	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029840)	promoter-TSS (NM_029840)	39.0	NM_029840	77032.0	Mm.87238	NM_029840	ENSMUSG00000028251	Tstd3	2610029I01Rik	thiosulfate sulfurtransferase (rhodanese)-like domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98858179-2	chr11	98858079	98858279	+	766.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5419.0	NM_197940	68524.0	Mm.28661	NM_197940	ENSMUSG00000038013	Wipf2	1110014J05Rik|5730509C05Rik|AA407487|Gm1176|Wich|Wire	WAS/WASL interacting protein family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-143038308-4	chr7	143038190	143038390	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015529, intron 2 of 3)	ERVL-B4-int|LTR|ERVL	-14460.0	NM_133655	12520.0	Mm.806	NM_133655	ENSMUSG00000037706	Cd81	Tapa-1|Tapa1|Tspan28	CD81 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-145832087-4	chr2	145831988	145832188	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028724, intron 4 of 12)	intron (NM_028724, intron 4 of 12)	45972.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131438726-4	chr1	131438627	131438827	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081011, intron 2 of 22)	intron (NM_001081011, intron 2 of 22)	88634.0	NM_001081011	14270.0	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	2.99204537142466	3.16376259734718	4.31425679127106	2.4580410004041	2.61102295013262	2.80813178178774	3.27551666056482	3.33967266636973	-0.623981538714147	0.355379666065672	0.853664850644233
Merged-chr5-72598893-2	chr5	72598793	72598993	+	595.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-11343.0	NM_001024147	545758.0	Mm.332426	NM_001024147	ENSMUSG00000060204	Gm5868	EG545758	predicted gene 5868	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-62582693-3	chr4	62582579	62582779	+	765.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019492, intron 3 of 19)	intron (NM_019492, intron 3 of 19)	22832.0	NM_019492	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-64118367-4	chr1	64118277	64118477	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033563, intron 1 of 3)	intron (NM_033563, intron 1 of 3)	3012.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-18687580-4	chr16	18687469	18687669	+	968.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57631.0	NM_213614	18951.0	Mm.20365	NM_213614	ENSMUSG00000072214	Sept5	Cdcrel-1|Cdcrel1|Pnutl1	septin 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-110177310-2	chr5	110177244	110177444	+	791.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040430)	promoter-TSS (NR_040430)	487.0	NM_008146	269682.0	Mm.9392	NM_008146	ENSMUSG00000029502	Golga3	5330413L04|5430416E01Rik|AI449376|AW490576|G1-499-14|Mea-2|Mea2|Mea2/Golga3|repro27	golgi autoantigen, golgin subfamily a, 3	protein-coding	2.51507126568301	1.9633991174653	1.89971740608613	1.84868502001395	1.62259517082679	2.76703584092462	2.06091982142637	1.85773205438607	0.154882031003515	0.867918372464928	0.998431161219273
Merged-chr1-36049459-2	chr1	36049359	36049559	+	582.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-18941.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-17976053-4	chr13	17975946	17976146	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17305.0	NM_025904	67008.0	Mm.252918	NM_025904	ENSMUSG00000075054	Yae1d1	1600012F09Rik	Yae1 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-94131736-2	chr11	94131636	94131836	+	540.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-79718.0	NM_009427	22057.0	Mm.259673	NM_009427	ENSMUSG00000037573	Tob1	Tob|Trob	transducer of ErbB-2.1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-30622364-3	chr15	30622267	30622467	+	794.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355502, intron 5 of 21)	intron (NM_001355502, intron 5 of 21)	-416759.0	NR_045186	73784.0	Mm.66947	NR_045186	ENSMUSG00000115474	4930430F21Rik	-	RIKEN cDNA 4930430F21 gene	ncRNA	0.932377723559202	0.884564418654201	0.392044298689086	0.686914388217538	0.943941416444876	0.594420271244687	0.393575779828812	0.387622341021462	-0.800080106000746	0.647918265381635	1
Merged-chr11-85831443-2	chr11	85831343	85831543	+	835.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_077059, intron 1 of 4)	intron (NR_077059, intron 1 of 4)	945.0	NR_077059	69909.0	Mm.440214	NR_077059	ENSMUSG00000087013	2610027K06Rik	-	RIKEN cDNA 2610027K06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-149843594-1	chr1	149843494	149843694	+	558.0	f0_c57.idr	intron (NM_008869, intron 15 of 17)	MTD|LTR|ERVL-MaLR	78845.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-4867494-1	chr11	4867394	4867594	+	741.0	f1_balb.idr	Intergenic	LTRIS_Mus|LTR|ERV1	-6457.0	NM_008698	18082.0	Mm.293716	NM_008698	ENSMUSG00000034285	Nipsnap1	-	nipsnap homolog 1	protein-coding	-1.21575676353841	-1.1882771616738	-1.1995328574972	-1.2087786211754	-1.21524488394202	-1.18583800543462	-1.19698481468061	-0.540595393272118	2.74438217975722	0.425994238664144	1
Merged-chr10-56378058-3	chr10	56377987	56378187	+	867.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010288, intron 1 of 1)	intron (NM_010288, intron 1 of 1)	787.0	NM_010288	14609.0	Mm.378921	NM_010288	ENSMUSG00000050953	Gja1	AU042049|AW546267|Cnx43|Cx43|Cx43alpha1|Gja-1|Npm1|connexin43	gap junction protein, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-65655206-4	chr3	65655095	65655295	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4093.0	NR_106200	102465905.0		NR_106200	ENSMUSG00000098944	Mir8120	Gm27637|mmu-mir-8120	microRNA 8120	ncRNA	5.15679306314573	5.73718928983892	4.36427712677282	4.66613709848723	5.60327039387061	5.77188051779214	5.15565393653314	5.61576499998769	0.552735582929037	0.101752814302614	0.495873941474591
Merged-chr5-135489252-4	chr5	135489156	135489356	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146001, intron 1 of 30)	CpG	55866.0	NM_146001	215114.0	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-36720895-1	chr7	36720795	36720995	+	744.0	f1_c57bl6.idr	intron (NM_172298, intron 1 of 1)	intron (NM_172298, intron 1 of 1)	22777.0	NM_172298	243931.0	Mm.44141	NM_172298	ENSMUSG00000021217	Tshz3	A630038G13Rik|Tsh3|Zfp537|mKIAA1474|teashirt3	teashirt zinc finger family member 3	protein-coding	1.49376747484399	0.854789194079353	1.38259877968671	0.610630726455174	1.50994744314858	0.861151234747441	0.622557114876381	0.612262503904774	-0.69567154362077	0.659286543380617	0.989424609841641
Merged-chr2-119547097-4	chr2	119547023	119547223	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019769)	promoter-TSS (NM_019769)	504.0	NM_172857	241624.0	Mm.212773	NM_172857	ENSMUSG00000048647	Exd1	4932702D22Rik|Exdl1|mExd1	exonuclease 3'-5' domain containing 1	protein-coding	4.35782226025161	4.90463918641032	4.44728121173769	4.71571429397516	5.45281124980624	5.33289559076089	5.03618117792916	5.42014416129959	0.844988796989322	0.00844928782457256	0.0964859346312388
Merged-chr7-79934577-2	chr7	79934477	79934677	+	752.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027420, intron 1 of 5)	intron (NM_027420, intron 1 of 5)	687.0	NM_027420	70420.0	Mm.34266	NM_027420	ENSMUSG00000039043	Arpin	2610034B18Rik	actin-related protein 2/3 complex inhibitor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-15728466-4	chr6	15728377	15728577	+	847.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175088, intron 2 of 4)	intron (NM_175088, intron 2 of 4)	7816.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32447366-4	chr2	32447245	32447445	+	930.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146118, intron 1 of 10)	intron (NM_146118, intron 1 of 10)	-3112.0	NM_194335	71254.0	Mm.102341	NM_194335	ENSMUSG00000039164	Naif1	2310007O20Rik|4933440H19Rik	nuclear apoptosis inducing factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-105287937-3	chr14	105287932	105288132	+	731.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029561, intron 2 of 7)	(TATATG)n|Simple_repeat|Simple_repeat	29359.0	NM_001190989	76273.0	Mm.290669	NM_029561	ENSMUSG00000053253	Ndfip2	0710001O20Rik|2810436B12Rik|9130207N19Rik|N4wbp5a|mKIAA1165	Nedd4 family interacting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-59182429-2	chr12	59182329	59182529	+	761.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001165253, intron 19 of 22)	MTC|LTR|ERVL-MaLR	37054.0	NM_001033156	70611.0	Mm.311026	NM_001033156	ENSMUSG00000035329	Fbxo33	5730501N20Rik|AI642135	F-box protein 33	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-57621470-4	chr18	57621385	57621585	+	907.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311063, intron 5 of 5)	intron (NM_001311063, intron 5 of 5)	17100.0	NR_045360	70157.0	Mm.490532	NR_045360		2210409D07Rik	-	RIKEN cDNA 2210409D07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-14870667-4	chr14	14870546	14870746	+	987.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195229, intron 21 of 34)	intron (NM_001195229, intron 21 of 34)	49831.0	NM_001195229	674895.0	Mm.317563	NM_001034865	ENSMUSG00000042567	Nek10	Gm282	NIMA (never in mitosis gene a)- related kinase 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-105796195-3	chr12	105796100	105796300	+	872.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011112, intron 1 of 21)	intron (NM_011112, intron 1 of 21)	11503.0	NM_001347440	18789.0	Mm.255877	NM_011112	ENSMUSG00000021111	Papola	Pap|PapIII|Plap	poly (A) polymerase alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-56899672-2	chr6	56899572	56899772	+	642.799988	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360963, intron 1 of 9)	intron (NM_001360963, intron 1 of 9)	2214.0	NM_001252374	107569.0	Mm.158936	NM_026004	ENSMUSG00000029780	Nt5c3	1600024P05Rik|2610206B05Rik|3110004A18Rik|AI842776|Nt5c3a|Nt5y|P5'N-1|P5N-1|PN-1|PN-I|PSN1|UMPH|Umph-1|Umph1|cN-III|lupin|p36	5'-nucleotidase, cytosolic III	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118643810-2	chr9	118643710	118643910	+	672.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 4 of 27)	(CA)n|Simple_repeat|Simple_repeat	37101.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-55756917-1	chr16	55756817	55757017	+	1000.0	f0_c57.idr	Intergenic	Intergenic	65221.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-5349095-4	chr15	5349000	5349200	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-104913.0	NM_008965	19219.0	Mm.18509	NM_008965	ENSMUSG00000039942	Ptger4	EP4|Ptgerep4	prostaglandin E receptor 4 (subtype EP4)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-102282010-1	chr11	102281910	102282110	+	783.666687	f1_balb.idr	Intergenic	B2_Mm1a|SINE|B2	-2810.0	NM_001302506	72053.0	Mm.101274	NM_028076	ENSMUSG00000034757	Tmub2	2010008E23Rik	transmembrane and ubiquitin-like domain containing 2	protein-coding	0.320970175572632	0.353219319389198	0.342838084933902	0.334709657324041	1.4582155102337	0.355536409346548	1.02221766549068	1.08290043750444	4.6546138861067	0.0120288274229058	1
Merged-chr19-6925112-2	chr19	6925012	6925212	+	850.4166869999999	f1_balb.idr|f1_c57bl6.idr	TTS (NM_008431)	TTS (NM_008431)	268.0	NM_001039494	67077.0	Mm.251306	NM_001039494	ENSMUSG00000050623	Catsperz	1700019N12Rik|A430107B04Rik|MLZ-622|Tex40	cation channel sperm associated auxiliary subunit zeta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41307315-2	chr19	41307215	41307415	+	566.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 9 of 16)	MER58A|DNA|hAT-Charlie	-43311.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-21825096-4	chr3	21824995	21825195	+	864.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-251557.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-83654885-1	chr8	83654785	83654985	+	1000.0	f1_c57bl6.idr	intron (NM_018771, intron 1 of 6)	intron (NM_018771, intron 1 of 6)	2207.0	NM_018771	67903.0	Mm.20945	NM_018771	ENSMUSG00000019433	Gipc1	GIPC|Glut1CIP|Rgs19ip1|Semcap1|TIP-2|TaxIP2	GIPC PDZ domain containing family, member 1	protein-coding	1.19941278121225	1.82541705572088	0.629258564630645	1.00442289411103	0.601152457433406	1.6469430099956	0.861603347559505	0.619797674884348	-0.830616543551272	0.58500491715453	0.967268722441911
Merged-chr17-80288264-2	chr17	80288164	80288364	+	844.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_198942, intron 1 of 22)	intron (NM_198942, intron 1 of 22)	-1948.0	NM_194269	378462.0	Mm.45208	NM_194269	ENSMUSG00000045257	Morn2	Mopt	MORN repeat containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-118243239-2	chr7	118243139	118243339	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027879)	promoter-TSS (NR_027879)	398.0	NM_001031814	233789.0	Mm.309053	NM_177180	ENSMUSG00000030655	Smg1	2610207I05Rik|5430435M13Rik|C130002K18Rik|mKIAA0421	SMG1 homolog, phosphatidylinositol 3-kinase-related kinase (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-40085962-4	chr1	40085861	40086061	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_037980)	promoter-TSS (NR_037980)	-110.0	NR_037980	100047133.0	Mm.447052	NR_037980	ENSMUSG00000097899	Gm16894	-	predicted gene, 16894	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-59732859-6	chr9	59732832	59733032	+	945.9833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17717.0	NM_001172069	71599.0	Mm.279070	NM_027838	ENSMUSG00000051705	Senp8	9130010J17Rik|AU020827|Den1|Nedp1|Prsc2	SUMO/sentrin specific peptidase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-113485028-2	chr13	113484928	113485128	+	883.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045501, intron 2 of 6)	intron (NR_045501, intron 2 of 6)	17816.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-79508093-3	chr14	79508021	79508221	+	771.883362	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007920, intron 1 of 8)	ID4_|SINE|ID	-7553.0	NM_001286412	13709.0	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-184741496-1	chr1	184741396	184741596	+	967.0	f1_balb.idr	Intergenic	Intergenic	-9003.0	NM_008250	15284.0	Mm.1347	NM_008250	ENSMUSG00000039377	Hlx	Hlx1	H2.0-like homeobox	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32992298-1	chr2	32992198	32992398	+	567.0	f0_balb.idr	intron (NM_001355201, intron 26 of 29)	intron (NM_001355201, intron 26 of 29)	-10215.0	NR_151460	56017.0	Mm.305754	NM_019488	ENSMUSG00000026791	Slc2a8	D2Ertd44e|GLUT8|GlutX1	solute carrier family 2, (facilitated glucose transporter), member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-136390263-2	chr7	136390163	136390363	+	702.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40848.0	NR_040459	330664.0	Mm.127762	NR_040459	ENSMUSG00000109633	C230079O03Rik	C230079O03	RIKEN cDNA C230079O03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-111218563-2	chr5	111218466	111218666	+	710.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001267622, intron 6 of 22)	intron (NM_001267622, intron 6 of 22)	-112131.0	NM_001301644	56305.0	Mm.200516	NM_019640	ENSMUSG00000050017	Pitpnb	PI-TP-beta	phosphatidylinositol transfer protein, beta	protein-coding	-1.13799161856527	-1.11509962161431	-1.12611682695956	-0.600839935108385	-0.990754861597232	-1.11271214725662	-1.12362277315966	-1.13354676675577	-1.63747442377455	0.616904426498488	1
Merged-chr18-5592108-2	chr18	5592008	5592208	+	714.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360981)	promoter-TSS (NM_001360981)	248.0	NM_011546	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59906101-2	chr15	59906001	59906201	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	110517.0	NM_027668	71088.0	Mm.425950	NM_027668	ENSMUSG00000071749	4933412E24Rik	-	RIKEN cDNA 4933412E24 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-92067349-4	chr6	92067213	92067413	+	869.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172731, intron 14 of 20)	intron (NM_172731, intron 14 of 20)	-24105.0	NM_011630	22026.0	Mm.87062	NM_011630	ENSMUSG00000005893	Nr2c2	TAK1|Tr4|mKIAA4145	nuclear receptor subfamily 2, group C, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-45625525-4	chr17	45625433	45625633	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23431.0	NM_001177469	653016.0	Mm.45676	NM_001177468	ENSMUSG00000079471	Mymx	EG653016|Esgp|Gm7325|minion|myomerger	myomixer, myoblast fusion factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-127239528-2	chr1	127239428	127239628	+	670.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145128, intron 1 of 17)	intron (NM_145128, intron 1 of 17)	34542.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-67431536-3	chr8	67431439	67431639	+	859.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59219.0	NM_008673	17960.0	Mm.14125	NM_008673	ENSMUSG00000025588	Nat1	Nat-1	N-acetyl transferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-3596198-4	chr5	3596096	3596296	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172991, exon 1 of 5)	exon (NM_172991, exon 1 of 5)	130.0	NM_001293806	71382.0	Mm.379196	NM_027777	ENSMUSG00000005907	Pex1	5430414H02Rik|E330005K07Rik|ZWS1	peroxisomal biogenesis factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-23578083-1	chr13	23577983	23578183	+	678.0	f0_balb.idr	Intergenic	Intergenic	2320.0	NM_178204	319149.0	Mm.347699	NM_178204	ENSMUSG00000099583	Hist1h3d	H3-b	histone cluster 1, H3d	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-18022471-4	chr10	18022367	18022567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028440, intron 1 of 2)	intron (NM_028440, intron 1 of 2)	623.0	NM_001359560	73112.0	Mm.276041	NM_028440	ENSMUSG00000078453	Abracl	1700028I04Rik|3110003A17Rik	ABRA C-terminal like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-91598796-3	chr7	91598728	91598928	+	912.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011807, intron 2 of 22)	RMER6A|LTR|ERVK	-463566.0	NM_001243046	23859.0	Mm.147213	NM_011807	ENSMUSG00000052572	Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|Gm21505|PSD93	discs large MAGUK scaffold protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-35342762-3	chr2	35342675	35342875	+	904.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5766.0	NM_013515	13830.0	Mm.295284	NM_013515	ENSMUSG00000026880	Stom	Epb7.2	stomatin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-37857273-2	chr13	37857173	37857373	+	677.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039188, intron 1 of 9)	intron (NM_001039188, intron 1 of 9)	29880.0	NM_001039188	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-41162608-4	chr9	41162493	41162693	+	953.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-4531.0	NM_176860	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	4.39768462006664	3.98795447182626	4.05883401420948	4.53057630491698	3.78287627085221	3.9399221683885	4.08911645781873	2.86318173857285	-0.725513151719281	0.125912166080944	0.555810952405876
Merged-chr11-77100372-3	chr11	77100310	77100510	+	821.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176965, intron 17 of 17)	intron (NM_176965, intron 17 of 17)	-21973.0	NM_001012309	237859.0	Mm.156195	NM_001012309	ENSMUSG00000037958	Nsrp1	8030451K07|AI851076|AL022898|Ccdc55|NSpr70|NSrp70	nuclear speckle regulatory protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-60813199-1	chr2	60813099	60813299	+	557.0	f0_balb.idr	intron (NM_001141932, intron 2 of 14)	intron (NM_001141932, intron 2 of 14)	68239.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-29172101-1	chr17	29172001	29172201	+	761.0	f1_c57bl6.idr	intron (NM_001360239, intron 13 of 21)	intron (NM_001360239, intron 13 of 21)	37045.0	NM_001002786	442827.0	Mm.440341	NM_001002786	ENSMUSG00000064147	Rab44	9830134C10Rik	RAB44, member RAS oncogene family	protein-coding	0.969846903649077	0.60715364124662	2.31213983028964	0.565689744324237	0.981315841828314	0.612191220634574	2.33486787994088	0.568970249042368	0.0414644349883497	0.986928544633884	0.998431161219273
Merged-chr2-122743625-3	chr2	122743529	122743729	+	670.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019788, intron 2 of 4)	intron (NM_019788, intron 2 of 4)	5124.0	NM_019788	18457.0	Mm.268921	NM_019788	ENSMUSG00000005804	Bloc1s6	BLOC-1|Pldn|Stx13bp1|pa	biogenesis of lysosomal organelles complex-1, subunit 6, pallidin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-141646758-2	chr3	141646658	141646858	+	691.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001293561, intron 1 of 16)	intron (NM_001293561, intron 1 of 16)	181194.0	NM_009472	22253.0	Mm.24430	NM_009472	ENSMUSG00000059921	Unc5c	B130051O18Rik|Unc5h3|rcm	unc-5 netrin receptor C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-73875970-2	chr17	73875870	73876070	+	843.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	71129.0	NM_020578	57440.0	Mm.18526	NM_020578	ENSMUSG00000024065	Ehd3	Ehd2	EH-domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-126955912-3	chr6	126955811	126956011	+	699.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_138594, exon 9 of 14)	exon (NM_138594, exon 9 of 14)	15945.0	NM_138594	28040.0	Mm.44228	NM_138594	ENSMUSG00000030347	D6Wsu163e	C12orf4	DNA segment, Chr 6, Wayne State University 163, expressed	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99988952-1	chr7	99988852	99989052	+	570.0	f1_balb.idr	Intergenic	Intergenic	-8494.0	NM_175388	108937.0	Mm.323087	NM_175388	ENSMUSG00000058761	Rnf169	2900057K09Rik	ring finger protein 169	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-37608647-1	chr19	37608547	37608747	+	741.0	f0_balb.idr	intron (NM_175353, intron 17 of 21)	MTE2b|LTR|ERVL-MaLR	58229.0	NM_175353	107371.0	Mm.24865	NM_175353	ENSMUSG00000053799	Exoc6	4833405E05Rik|AW413330|C430002C19|Sec15|Sec15l1|hbd|msec15	exocyst complex component 6	protein-coding	-1.3681463318974	-1.33624156493372	-1.34650167276047	-0.80669348975676	-1.36769697821496	-1.33401815676661	-1.34417900924365	-1.3534210303531	-2.3580830592467	0.49586638340111	1
Merged-chr16-91357137-2	chr16	91357037	91357237	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15646.0	NM_010509	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166622690-2	chr2	166622590	166622790	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 5 of 39)	intron (NM_177782, intron 5 of 39)	58168.0	NR_152154	433503.0	Mm.491336	NR_152154		Gm29679	-	predicted gene, 29679	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-118547796-8	chr2	118547688	118547888	+	922.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311140)	promoter-TSS (NM_001311140)	-189.0	NM_001311140	171543.0	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-74277879-3	chr5	74277772	74277972	+	911.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114660, intron 5 of 8)	MLT1I|LTR|ERVL-MaLR	82546.0	NM_026878	68939.0	Mm.293316	NM_026878	ENSMUSG00000049907	Rasl11b	1190017B18Rik	RAS-like, family 11, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-69227498-2	chr17	69227398	69227598	+	776.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355736, intron 3 of 21)	intron (NM_001355736, intron 3 of 21)	49708.0	NR_045428	69750.0	Mm.439063	NR_045428	ENSMUSG00000100572	2410021H03Rik	-	RIKEN cDNA 2410021H03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-48048990-3	chr4	48048879	48049079	+	871.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_015743, exon 2 of 8)	5' UTR (NM_015743, exon 2 of 8)	-2267.0	NM_001307989	18124.0	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-6562518-4	chr11	6562360	6562560	+	954.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001190344, intron 2 of 9)	intron (NM_001190344, intron 2 of 9)	2277.0	NM_001190344	216527.0	Mm.221271	NM_146014	ENSMUSG00000000378	Ccm2	BC029157	cerebral cavernous malformation 2	protein-coding	3.58687595572489	3.94444937080848	3.28140019011657	3.3834320142932	4.06038405819013	4.60080430496577	3.19296134397912	4.42612040081374	0.841866730096083	0.0976669561447052	0.485690027559066
Merged-chr3-89775407-2	chr3	89775307	89775507	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027315, intron 1 of 12)	intron (NM_027315, intron 1 of 12)	1798.0	NM_027315	70093.0	Mm.41438	NM_027315	ENSMUSG00000042572	Ube2q1	1110002C01Rik|2310012M18Rik|AI854014|Gtap|NICE-5|PRO3094|Ube2q	ubiquitin-conjugating enzyme E2Q family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-79232255-4	chr7	79232169	79232369	+	912.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3b|LINE|CR1	-40997.0	NM_018811	54608.0	Mm.365490	NM_018811	ENSMUSG00000039202	Abhd2	2210009N18Rik|LABH2|Labh-2	abhydrolase domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-146798223-4	chr5	146798125	146798325	+	979.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3269.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	0.62458144619119	0.263474576036133	0.934422014540539	0.251510701538716	0.244119320975418	0.629993475822502	0.258217219937596	0.798973072303931	-0.286325388237829	0.882330351873104	1
Merged-chr4-63496065-4	chr4	63495971	63496171	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028640)	promoter-TSS (NM_028640)	-80.0	NM_001008791	73750.0	Mm.300397	NM_028640	ENSMUSG00000039137	Whrn	1110035G07Rik|AW122018|AW742671|C430046P22Rik|Dfnb31|Ush2d|wi	whirlin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-125675717-1	chr7	125675617	125675817	+	863.0	f1_balb.idr	intron (NM_207239, intron 10 of 36)	intron (NM_207239, intron 10 of 36)	31971.0	NM_207239	233863.0	Mm.294173	NM_207239	ENSMUSG00000032777	Gtf3c1	-	general transcription factor III C 1	protein-coding	0.35396294792003	0.894849201450575	0.370562781349356	0.925710995152728	0.355513654489772	0.380372327998181	1.08586862083851	0.819751982550057	0.184891991798763	0.920328835056616	1
Merged-chr10-128565393-4	chr10	128565322	128565522	+	975.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011119, intron 1 of 11)	CpG	512.0	NM_011119	18813.0	Mm.4742	NM_011119	ENSMUSG00000025364	Pa2g4	38kDa|AA672939|Ebp1|Plfap	proliferation-associated 2G4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-173224214-4	chr2	173224107	173224307	+	913.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_022995)	TTS (NM_022995)	-5285.0	NM_001139519	58203.0	Mm.116687	NM_021394	ENSMUSG00000027514	Zbp1	2010010H03Rik|Dai|Dlm1|mZaDLM	Z-DNA binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-164879390-4	chr2	164879294	164879494	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146129)	promoter-TSS (NM_146129)	26.0	NM_146129	228866.0	Mm.241134	NM_146129	ENSMUSG00000039849	Pcif1	2310022K11Rik|C20orf67|F730014I05Rik	PDX1 C-terminal inhibiting factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-38074721-2	chr15	38074608	38074808	+	559.5	f0_balb.idr|f1_balb.idr	intron (NM_001112721, intron 1 of 58)	intron (NM_001112721, intron 1 of 58)	4146.0	NM_001112721	70790.0	Mm.476840	NM_027553	ENSMUSG00000037487	Ubr5	Edd|Edd1	ubiquitin protein ligase E3 component n-recognin 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120363949-4	chr8	120363861	120364061	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	-124905.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-109265884-2	chr3	109265784	109265984	+	574.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx10|LINE|L1	-74799.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-107056528-4	chr13	107056434	107056634	+	961.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	33964.0	NR_015471	100040322.0	Mm.133867	NR_015471	ENSMUSG00000071181	3830408C21Rik	-	RIKEN cDNA 3830408C21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-87185931-1	chr17	87185831	87186031	+	1000.0	f1_c57bl6.idr	Intergenic	Intergenic	9011.0	NR_046016	399626.0	Mm.396062	NR_046016		C330024C12Rik	-	RIKEN cDNA C330024C12 gene	ncRNA	4.39541310591378	3.80452861155171	5.4179020693727	4.71871762960397	1.86624748298842	3.64602313971553	3.86316929856533	3.29750481564264	-1.83864153024598	0.00108296033130514	0.0206931236989316
Merged-chr7-101970203-4	chr7	101970078	101970278	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133947, intron 1 of 24)	CpG	335.0	NM_133947	101706.0	Mm.27259	NM_133947	ENSMUSG00000066306	Numa1	6720401E04Rik|AA764025|AL022610|AU014979|NuMA	nuclear mitotic apparatus protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70062299-5	chr14	70062297	70062497	+	977.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15048.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115011047-4	chr5	115010953	115011153	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029012)	promoter-TSS (NM_029012)	-471.0	NM_029012	74585.0	Mm.355894	NM_029012	ENSMUSG00000029550	Sppl3	4833416I09Rik|Psl4|Usmg3	signal peptide peptidase 3	protein-coding	2.93800162094242	2.4178385187909	3.8181582235538	2.40437442180915	2.29249261585771	1.51534247927975	3.213617419516	2.41763736605433	-0.974912182244166	0.236805812347259	0.733553768261449
Merged-chr18-77858685-4	chr18	77858585	77858785	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013831, intron 5 of 14)	intron (NM_013831, intron 5 of 14)	-62295.0	NR_152167	619308.0	Mm.490456	NM_001033812		F830208F22Rik	-	RIKEN cDNA F830208F22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126428265-2	chr7	126428165	126428365	+	567.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030566)	promoter-TSS (NM_030566)	-502.0	NM_030566	70314.0	Mm.35467	NM_030566	ENSMUSG00000030727	Rabep2	2610011A08Rik|AI462746|Fra	rabaptin, RAB GTPase binding effector protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28826067-3	chr7	28825914	28826114	+	809.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_016772, exon 2 of 10)	exon (NM_016772, exon 2 of 10)	676.0	NM_016772	51798.0	Mm.291776	NM_016772	ENSMUSG00000053898	Ech1	AA617331	enoyl coenzyme A hydratase 1, peroxisomal	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150367019-4	chr4	150366909	150367109	+	861.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 1 of 22)	intron (NM_001085492, intron 1 of 22)	85093.0	NM_001085492	68703.0	Mm.291274	NM_001085492	ENSMUSG00000039852	Rere	1110033A15Rik|AI414665|ARG|ARP|ATN1L|AW742570|Atr2|DNB1|eye<m03Jus>|eyes3|mKIAA0458	arginine glutamic acid dipeptide (RE) repeats	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-64338775-4	chr1	64338661	64338861	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-194043.0	NM_009952	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-51687669-2	chr12	51687569	51687769	+	974.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001172098, intron 1 of 15)	ID_B1|SINE|B4	-3297.0	NM_001329699	11782.0	Mm.386749	NM_021710	ENSMUSG00000020955	Ap4s1	AI314282	adaptor-related protein complex AP-4, sigma 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-100621896-2	chr15	100621796	100621996	+	899.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_174992, exon 4 of 4)	exon (NM_174992, exon 4 of 4)	6234.0	NM_011873	23994.0	Mm.486175	NM_011873	ENSMUSG00000000346	Dazap2	AI314727|Brbp|Gcap28|Prtb|gt6-12|mKIAA0058	DAZ associated protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128032004-2	chr10	128031904	128032104	+	627.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3342.0	NM_013608	17938.0	Mm.3746	NM_013608	ENSMUSG00000061315	Naca	AL022831|AL024382|Gm1878|mKIAA0363|skNAC	nascent polypeptide-associated complex alpha polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-123352840-2	chr8	123352740	123352940	+	614.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172287, intron 2 of 14)	intron (NM_172287, intron 2 of 14)	20127.0	NM_172287	234857.0	Mm.150200	NM_172287	ENSMUSG00000010154	Spire2	BC026502|Spir-2|Spir2	spire type actin nucleation factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-17006741-1	chr7	17006641	17006841	+	691.0	f1_c57bl6.idr	intron (NM_011155, intron 9 of 12)	intron (NM_011155, intron 9 of 12)	12153.0	NM_001101535	434130.0	Mm.459162	NM_001101535	ENSMUSG00000041117	Ccdc8	-	coiled-coil domain containing 8	protein-coding	-0.0450825920673502	0.82778887272172	-0.0326043437482754	0.284581907862152	0.464524174090442	-0.0252092688639352	-0.0312703968675938	-0.0364629009473675	-1.39590721313185	0.532623461824137	1
Merged-chr4-53113412-2	chr4	53113312	53113512	+	781.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 5 of 49)	intron (NM_013454, intron 5 of 49)	46483.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-75556392-4	chr3	75556270	75556470	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019745, intron 1 of 7)	CpG	482.0	NM_019745	56426.0	Mm.316473	NM_019745	ENSMUSG00000027835	Pdcd10	2410003B13Rik|Ccm3|Tfa15|Tfar15	programmed cell death 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-86849805-2	chr6	86849705	86849905	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028298)	promoter-TSS (NR_028298)	288.0	NM_001040106	269774.0	Mm.221038	NM_177762	ENSMUSG00000057230	Aak1	5530400K14Rik|9630042K20|AU067724|AU067726|BC028270|C79663|D6Ertd245e|R75501|mKIAA1048	AP2 associated kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118248686-4	chr11	118248585	118248785	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001112699)	promoter-TSS (NM_001112699)	-93.0	NM_011180	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-61398671-2	chr18	61398571	61398771	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029879)	promoter-TSS (NR_029879)	-771.0	NR_029879	723889.0		NR_029879	ENSMUSG00000105200	Mir378a	Mir378|Mirn378|mmu-mir-378|mmu-mir-378a	microRNA 378a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72737090-4	chr6	72736988	72737188	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001079822, intron 3 of 12)	MIRb|SINE|MIR	51957.0	NM_001079822	21415.0	Mm.440067	NM_009332	ENSMUSG00000055799	Tcf7l1	Tcf-3|Tcf3|bHLHb21	transcription factor 7 like 1 (T cell specific, HMG box)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-134418670-4	chr1	134418561	134418761	+	975.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001306069, intron 1 of 7)	intron (NM_001306069, intron 1 of 7)	2997.0	NM_001306069	72674.0	Mm.259976	NM_028320	ENSMUSG00000026457	Adipor1	2810031L11Rik|ACDCR1|CGI-45|Paqr1	adiponectin receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55704286-2	chr14	55704186	55704386	+	601.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019984, intron 14 of 14)	intron (NM_019984, intron 14 of 14)	8802.0	NM_019984	21816.0	Mm.41964	NM_019984	ENSMUSG00000022218	Tgm1	2310004J08Rik|Tgase1	transglutaminase 1, K polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139356480-2	chr5	139356380	139356580	+	870.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001160265, intron 7 of 8)	intron (NM_001160265, intron 7 of 8)	3863.0	NM_001160265	545817.0	Mm.482474	NM_001160265	ENSMUSG00000029541	Cyp2w1	Gm455	cytochrome P450, family 2, subfamily w, polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-62541711-4	chr10	62541541	62541741	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14196.0	NM_001358965	19073.0	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-94171593-6	chr8	94171464	94171664	+	913.555542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1054.0	NM_008630	17750.0	Mm.147226	NM_008630	ENSMUSG00000031762	Mt2	AA409533|MT-II|Mt-2	metallothionein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72536844-2	chr6	72536744	72536944	+	971.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur3|SINE|Alu	-7547.0	NM_007599	12332.0	Mm.18626	NM_007599	ENSMUSG00000056737	Capg	gCap39|mbh1	capping protein (actin filament), gelsolin-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141195004-4	chr7	141194914	141195114	+	877.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153777)	promoter-TSS (NM_153777)	-129.0	NM_153777	70552.0	Mm.45104	NM_153777	ENSMUSG00000038637	Lrrc56	5730427C23Rik|BB110509|mFLJ00101	leucine rich repeat containing 56	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10388842-4	chr19	10388818	10389018	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173068)	promoter-TSS (NM_173068)	-172.0	NM_018801	54525.0	Mm.182654	NM_018801	ENSMUSG00000024743	Syt7	AI851541|B230112P13Rik	synaptotagmin VII	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120570452-4	chr8	120570312	120570512	+	926.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145896, intron 8 of 15)	intron (NM_001145896, intron 8 of 15)	18663.0	NM_178856	272551.0	Mm.275910	NM_178856	ENSMUSG00000031821	Gins2	2210013I18Rik|4833427B12Rik|AI323585|Pfs2	GINS complex subunit 2 (Psf2 homolog)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-20696322-2	chr9	20696222	20696422	+	746.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357639, intron 1 of 5)	MIRb|SINE|MIR	30681.0	NM_001357635	244723.0	Mm.293552	NM_173777	ENSMUSG00000032172	Olfm2	A030009A06Rik	olfactomedin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132599945-3	chr4	132599853	132600053	+	647.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER34A|LTR|ERV1	35886.0	NM_001081211	19204.0	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-25461104-4	chr2	25461029	25461229	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153557)	promoter-TSS (NM_153557)	-35.0	NM_153557	227622.0	Mm.261780	NM_153557	ENSMUSG00000047617	Paxx	D930050G13Rik	non-homologous end joining factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-126996938-4	chr2	126996805	126997005	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11806.0	NM_175550	108011.0	Mm.134045	NM_175550	ENSMUSG00000001998	Ap4e1	2310033A20Rik|9930028M04Rik|AV087807	adaptor-related protein complex AP-4, epsilon 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126764732-2	chr8	126764632	126764832	+	662.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-84288.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-47917230-1	chr8	47917130	47917330	+	699.0	f0_balb.idr	intron (NM_133791, intron 2 of 22)	intron (NM_133791, intron 2 of 22)	73321.0	NM_133791	52357.0	Mm.235074	NM_133791	ENSMUSG00000031563	Wwc2	5330431C14Rik|AU022508|C85457|D8Ertd594e	WW, C2 and coiled-coil domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-3895892-5	chr13	3895833	3896033	+	919.5200199999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019671, intron 3 of 11)	intron (NM_019671, intron 3 of 11)	-2352.0	NM_001047159	56349.0	Mm.22261	NM_019671	ENSMUSG00000021215	Net1	Net1a|mNET1	neuroepithelial cell transforming gene 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117085939-2	chr11	117085839	117086039	+	734.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur3|SINE|Alu	8591.0	NR_105853	102465258.0		NR_105853	ENSMUSG00000104740	Mir6516	mmu-mir-6516	microRNA 6516	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-113756209-2	chr9	113756109	113756309	+	623.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114347, intron 1 of 39)	intron (NM_001114347, intron 1 of 39)	14736.0	NM_001114347	76499.0	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-105718749-4	chr4	105718646	105718846	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-522467.0	NR_151521	105244641.0	Mm.404914	NR_151521		Gm12724	-	predicted gene 12724	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-93512034-4	chr1	93511936	93512136	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145519)	promoter-TSS (NM_145519)	-68.0	NM_145519	227377.0	Mm.243091	NM_145519	ENSMUSG00000034066	Farp2	AI465173|BC009153|D030026M03Rik|Fir|mKIAA0793	FERM, RhoGEF and pleckstrin domain protein 2	protein-coding	3.80240190122716	2.11842501442426	3.70970432644579	3.94683860285293	2.97290989909744	4.40112988179675	5.46009029690113	3.25606504770437	1.11975244825305	0.0865181183413528	0.452109923283777
Merged-chr17-35829923-4	chr17	35829814	35830014	+	871.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008027, exon 9 of 13)	exon (NM_008027, exon 9 of 13)	6557.0	NM_008027	14251.0	Mm.2931	NM_008027	ENSMUSG00000059714	Flot1	reggie-2	flotillin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96226915-4	chr3	96226833	96227033	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR11D|LTR|ERVK	5861.0	NM_178214	319190.0	Mm.439791	NM_178214	ENSMUSG00000068854	Hist2h2be	AV127319|H2b-613|T25626	histone cluster 2, H2be	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-77984263-2	chr10	77984163	77984363	+	601.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_026431, intron 6 of 6)	intron (NM_026431, intron 6 of 6)	5613.0	NM_026431	67884.0	Mm.297512	NM_026431	ENSMUSG00000020284	1810043G02Rik	AV026620|D10Jhu13e	RIKEN cDNA 1810043G02 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-75068908-4	chr14	75068830	75069030	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030568, intron 2 of 3)	MLT1D|LTR|ERVL-MaLR	52903.0	NM_198642	271221.0	Mm.320280	NM_198642	ENSMUSG00000034959	Rubcnl	5031414D18Rik|Gm744|Gm911|Kiaa0226l	RUN and cysteine rich domain containing beclin 1 interacting protein like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-117495047-2	chr7	117494947	117495147	+	584.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175645, intron 2 of 11)	intron (NM_175645, intron 2 of 11)	114068.0	NM_175645	233781.0	Mm.461427	NM_175645	ENSMUSG00000030657	Xylt1	8030490L12	xylosyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-120080886-4	chr1	120080774	120080974	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7094.0	NM_019432	170706.0	Mm.24750	NM_019432	ENSMUSG00000050777	Tmem37	AI173373|AW540203|Pr|Pr1	transmembrane protein 37	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-173535457-4	chr2	173535368	173535568	+	947.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F2|LTR|ERVL-MaLR	12876.0	NM_028158	72221.0	Mm.46132	NM_028158	ENSMUSG00000027518	1700021F07Rik	-	RIKEN cDNA 1700021F07 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-58532402-4	chr2	58532328	58532528	+	869.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110204, intron 2 of 12)	intron (NM_001110204, intron 2 of 12)	28982.0	NM_001355049	11477.0	Mm.689	NM_007394	ENSMUSG00000026836	Acvr1	ALK2|ActR-I|ActRIA|Acvr|Acvrlk2|Alk-2|Alk8|D330013D15Rik|SKR1|Tsk7L	activin A receptor, type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-179845064-4	chr1	179844955	179845155	+	949.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41040.0	NM_026375	226747.0	Mm.128165	NM_026375	ENSMUSG00000026491	Ahctf1	6230412P20Rik|AV011447|Elys	AT hook containing transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-40576618-3	chr12	40576541	40576741	+	803.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	130588.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-86585293-4	chr6	86585218	86585418	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42856.0	NM_026414	67855.0	Mm.183043	NM_026414	ENSMUSG00000033508	Asprv1	2300003P22Rik|AA986851|SASP|SASPase|Taps	aspartic peptidase, retroviral-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-73743335-2	chr15	73743235	73743435	+	818.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166388, intron 1 of 5)	intron (NM_001166388, intron 1 of 5)	-4691.0	NM_008975	19245.0	Mm.390807	NM_008975	ENSMUSG00000059895	Ptp4a3	AV088979|Prl-3|pPtp4a3	protein tyrosine phosphatase 4a3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-25071012-2	chr8	25070912	25071112	+	815.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_031257, intron 3 of 11)	intron (NM_031257, intron 3 of 11)	30799.0	NM_031257	83436.0	Mm.261122	NM_031257	ENSMUSG00000031557	Plekha2	6430512N22Rik|AI851530|AU041791|TAPP2|W91773	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2	protein-coding	-1.01687625881987	-0.997184774571648	-1.00961025074461	-0.838172971428676	-1.01629461591426	-0.351764671307868	-1.00679739529773	-1.01255855976603	2.0132777746594	0.515583785688098	1
Merged-chr8-34807226-4	chr8	34807103	34807303	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_176933)	promoter-TSS (NM_176933)	-407.0	NM_176933	319520.0	Mm.170276	NM_176933	ENSMUSG00000031530	Dusp4	2700078F24Rik|AI844617|BB104621|E130306H24Rik|MKP2	dual specificity phosphatase 4	protein-coding	-0.499940950918087	-0.487518524828365	0.0891561271406926	-0.494726023626598	-0.499164980458282	-0.486601867615524	0.100277611126392	-0.494177430718284	0.0410194320726077	0.98816738256539	1
Merged-chr1-87214831-2	chr1	87214731	87214931	+	875.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039169, intron 1 of 6)	intron (NM_001039169, intron 1 of 6)	892.0	NM_001039169	26987.0	Mm.227183	NM_023314	ENSMUSG00000026254	Eif4e2	2700069E09Rik|AI036339|AV129531|D0H0S6743E|Eif4el3	eukaryotic translation initiation factor 4E member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59727172-2	chr15	59727072	59727272	+	877.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	67787.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-55366216-4	chr4	55366123	55366323	+	909.1333619999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009011, intron 1 of 9)	MTC|LTR|ERVL-MaLR	16181.0	NM_009011	19359.0	Mm.196846	NM_009011	ENSMUSG00000028426	Rad23b	0610007D13Rik|AV001138|HR23B|mHR23B|p58	RAD23 homolog B, nucleotide excision repair protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-8997108-2	chr13	8997008	8997208	+	680.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1096.0	NM_027000	69237.0	Mm.41800	NM_027000	ENSMUSG00000021149	Gtpbp4	2610028C09Rik|Crfg|Gtpbp3|NGB|Nog1	GTP binding protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-145588166-3	chr2	145588067	145588267	+	822.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053195, intron 7 of 16)	intron (NM_053195, intron 7 of 16)	-33185.0	NM_001037929	627302.0	Mm.445953	NM_001037929		Gm14092	-	predicted gene 14092	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-24653816-3	chr7	24653709	24653909	+	779.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7485.0	NR_030681	100043706.0	Mm.483825	NR_030681	ENSMUSG00000108470	Gm4598	-	predicted gene 4598	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-156730653-4	chr2	156730546	156730746	+	980.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042487, intron 1 of 6)	intron (NM_001042487, intron 1 of 6)	9367.0	NM_001042487	228836.0	Mm.22094	NM_146128	ENSMUSG00000061689	Dlgap4	AI225853|BC024558|DAP-4|DAP4|SAPAP-4|Sapap4|WBP16	DLG associated protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-95713449-4	chr11	95713363	95713563	+	889.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045780)	promoter-TSS (NR_045780)	-709.0	NR_045780	432396.0	Mm.426849	NR_045780	ENSMUSG00000086191	Zfp652os	1110035M17Rik	zinc finger protein 652, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-152129771-2	chr4	152129671	152129871	+	665.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019585)	promoter-TSS (NM_019585)	-846.0	NM_019585	56226.0	Mm.264215	NM_019585	ENSMUSG00000028943	Espn	je	espin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-36969406-2	chr14	36969306	36969506	+	581.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027045)	promoter-TSS (NM_027045)	-642.0	NM_027045	72972.0	Mm.27621	NM_027045	ENSMUSG00000058690	Ccser2	1700012P13Rik|2900054P12Rik|AI035535|AW108503|Fam190b|Gcap14	coiled-coil serine rich 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-12988165-2	chr17	12988065	12988265	+	675.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_175394, intron 1 of 5)	B1F2|SINE|Alu	4094.0	NM_001113533	60532.0	Mm.275521	NM_175394	ENSMUSG00000060475	Wtap	2810408K05Rik|9430038B09Rik	Wilms tumour 1-associating protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115125343-3	chr5	115125244	115125444	+	851.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_175352, exon 5 of 5)	3' UTR (NM_175352, exon 5 of 5)	-5998.0	NM_007383	11409.0	Mm.18759	NM_007383	ENSMUSG00000029545	Acads	AI196007|Bcd-1|Bcd1|Hdlq8|SCAD	acyl-Coenzyme A dehydrogenase, short chain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-49265677-2	chr13	49265577	49265777	+	854.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_015759, intron 16 of 17)	intron (NM_015759, intron 16 of 17)	-16971.0	NM_028340	66329.0	Mm.34308	NM_025491	ENSMUSG00000021384	Susd3	1700017I11Rik|2810440J20Rik	sushi domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127229088-4	chr10	127228985	127229185	+	787.604187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008447)	TTS (NM_008447)	-17463.0	NM_001359280	117150.0	Mm.22682	NM_054097	ENSMUSG00000025417	Pip4k2c	Pip5k2c	phosphatidylinositol-5-phosphate 4-kinase, type II, gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-13191591-2	chr10	13191491	13191691	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_181470, intron 2 of 10)	B3A|SINE|B2	1546.0	NM_181470	353258.0	Mm.117581	NM_181470	ENSMUSG00000019814	Ltv1	2610020N02Rik	LTV1 ribosome biogenesis factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-17427068-3	chr14	17426960	17427160	+	930.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR42-int|LTR|ERVK	-233900.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-51082875-4	chr14	51082716	51082916	+	903.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8261.0	NM_001161731	11727.0	Mm.202665	NM_007447	ENSMUSG00000072115	Ang	AI385586|Ang1|Rnase5|Rnase5a	angiogenin, ribonuclease, RNase A family, 5	protein-coding	2.7743740136288	3.11725099224203	3.12014742970386	3.76446660135152	3.44108640387814	3.35330511377254	3.33602031956154	3.31949954281666	0.187343556521465	0.746677042460903	0.998431161219273
Merged-chr7-65692425-2	chr7	65692325	65692525	+	587.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026795)	promoter-TSS (NM_026795)	-992.0	NM_178056	68634.0	Mm.476828	NM_026795	ENSMUSG00000078681	Tm2d3	1110025I09Rik|5930422O05Rik|Blp2	TM2 domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-120189438-4	chr6	120189335	120189535	+	942.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016718, intron 1 of 3)	intron (NM_016718, intron 1 of 3)	-4388.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-66098963-2	chr7	66098863	66099063	+	560.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10552.0	NM_001081163	269941.0	Mm.333916	NM_001081163	ENSMUSG00000032640	Chsy1	mKIAA0990	chondroitin sulfate synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-136919099-4	chr5	136918979	136919179	+	963.883301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015555)	promoter-TSS (NR_015555)	-67.0	NR_015555	66752.0	Mm.135764	NR_015555	ENSMUSG00000097908	4933404O12Rik	AW494809	RIKEN cDNA 4933404O12 gene	ncRNA	1.3863126740402	1.68829783869551	1.76444801776265	1.82659697767126	1.74777544123706	1.96230028304818	1.10137306128903	1.72419205396891	0.000749386400304502	0.99945677091902	0.999790089835452
Merged-chr8-40598099-4	chr8	40597991	40598191	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040699, intron 3 of 13)	MER33|DNA|hAT-Charlie	36701.0	NM_001040699	54384.0	Mm.294871	NM_019433	ENSMUSG00000039431	Mtmr7	-	myotubularin related protein 7	protein-coding	5.29333760554522	5.85577974131822	4.67983064300805	5.0948841889331	5.71855229935529	6.18054453541283	6.05758205731961	5.58328421928917	0.68931762155639	0.021340020135171	0.187209377782892
Merged-chr9-114794702-4	chr9	114794594	114794794	+	838.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027294, intron 2 of 3)	intron (NM_027294, intron 2 of 3)	-12701.0	NM_001252479	102545.0	Mm.35600	NM_133978	ENSMUSG00000032436	Cmtm7	AI481279|Cklfsf7|LNV	CKLF-like MARVEL transmembrane domain containing 7	protein-coding	2.53413607572919	2.7287824981719	3.64193645614493	2.5502768322873	3.45189363019166	4.0202213976876	3.12588841041487	1.82046417741141	0.60125174234834	0.414039613465298	0.896255824336656
Merged-chr7-99781557-4	chr7	99781451	99781651	+	949.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14387.0	NM_146356	258353.0	Mm.377450	NM_146356	ENSMUSG00000073997	Olfr521	MOR101-2	olfactory receptor 521	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55099377-2	chr14	55099310	55099510	+	649.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_153083)	TTS (NM_153083)	4626.0	NM_153083	105663.0	Mm.319204	NM_153083	ENSMUSG00000045691	Thtpa	AW122966	thiamine triphosphatase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-116626849-4	chr4	116626743	116626943	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081475, intron 1 of 13)	CpG	654.0	NM_001081475	50927.0	Mm.257181	NM_016777	ENSMUSG00000028693	Nasp	5033430J04Rik|AI131596|AI317140|D4Ertd767e|Epcs32|Nasp-T	nuclear autoantigenic sperm protein (histone-binding)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-73070702-2	chr17	73070602	73070802	+	657.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37283.0	NM_001177968	225010.0	Mm.329194	NM_001081071	ENSMUSG00000054469	Lclat1	AI181996|Agpat8|Alcat1|Gm91|Lycat	lysocardiolipin acyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-54118987-2	chr10	54118887	54119087	+	760.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43065.0	NR_038016	100502920.0	Mm.403982	NR_038016	ENSMUSG00000097069	Gm16998	-	predicted gene, 16998	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-77610769-4	chr8	77610665	77610865	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145599)	promoter-TSS (NM_145599)	-112.0	NM_145599	234463.0	Mm.273578	NM_145599	ENSMUSG00000031617	Tmem184c	8430433H16Rik|AI645453|AL033298|BC004056|Tmem34	transmembrane protein 184C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47182297-3	chr17	47182197	47182397	+	936.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001097623, intron 3 of 19)	intron (NM_001097623, intron 3 of 19)	41355.0	NM_001097623	224829.0	Mm.260989	NM_172622		Trerf1	9430096I18Rik|AI429294|B830015H24|RAPA|Trep-132|Trep132	transcriptional regulating factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-181531378-2	chr1	181531278	181531478	+	591.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19927.0	NM_207280	403180.0	Mm.220754	NM_207280	ENSMUSG00000050625	Ccdc121	6530421E24Rik|Gm755	coiled-coil domain containing 121	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150238456-1	chr4	150238356	150238556	+	850.0	f1_balb.idr	intron (NM_023119, intron 1 of 11)	intron (NM_023119, intron 1 of 11)	1132.0	NM_001025388	433182.0	Mm.70666	NM_001025388	ENSMUSG00000059040	Eno1b	EG433182|Eno1|Gm5506	enolase 1B, retrotransposed	protein-coding	0.656257604981118	0.730412294364388	0.707255734144674	2.37205200320094	0.661213213183228	1.25728322616058	2.2707448223798	1.48431505044837	0.451688562857777	0.854221062104824	0.998431161219273
Merged-chr11-60559601-2	chr11	60559501	60559701	+	826.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21918.0	NM_172943	268420.0	Mm.262056	NM_172943	ENSMUSG00000042650	Alkbh5	AW050020|AW215868|Abh5|E130207K11|Ofoxd	alkB homolog 5, RNA demethylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46740572-4	chr8	46740501	46740701	+	885.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152560, intron 1 of 7)	CpG	856.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-92444306-4	chr5	92444174	92444374	+	796.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007644, exon 12 of 12)	exon (NM_007644, exon 12 of 12)	-9075.0	NM_183392	269113.0	Mm.275289	NM_183392	ENSMUSG00000034826	Nup54	3110079L04Rik|54kDa	nucleoporin 54	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-180966225-3	chr2	180966125	180966325	+	855.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177708)	promoter-TSS (NM_001177708)	-1000.0	NM_145760	228998.0	Mm.33765	NM_145760	ENSMUSG00000027575	Arfgap1	AI115377|Arf1gap	ADP-ribosylation factor GTPase activating protein 1	protein-coding	2.26625797156856	2.90022940260415	3.37589437092337	3.16429670532698	1.87319017615088	1.37265886454791	2.6149479829422	1.28833140472464	-2.24214835476347	0.01314762235181	0.13218869243884
Merged-chr9-21321588-4	chr9	21321510	21321710	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359227, intron 1 of 22)	intron (NM_001359227, intron 1 of 22)	891.0	NM_001199186	68682.0	Mm.148425	NM_152808	ENSMUSG00000057193	Slc44a2	1110028E10Rik|CTL2	solute carrier family 44, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-83632174-4	chr12	83632074	83632274	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027349)	promoter-TSS (NM_027349)	-60.0	NM_027349	67039.0	Mm.46005	NM_027349	ENSMUSG00000010608	Rbm25	2600011C06Rik|2610015J01Rik|A130095G20Rik|AI159652|AL023075|AU043498|RNPC7	RNA binding motif protein 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-47772271-2	chr15	47772171	47772371	+	641.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081391, intron 32 of 70)	Lx7|LINE|L1	1019718.0	NM_001081391	239420.0	Mm.309363	NM_001081391	ENSMUSG00000022311	Csmd3	4930500N14Rik|mKIAA1894	CUB and Sushi multiple domains 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141643724-4	chr4	141643609	141643809	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347237, intron 1 of 18)	intron (NM_001347237, intron 1 of 18)	-19875.0	NM_001013780	384071.0	Mm.295682	NM_001013780	ENSMUSG00000040740	Slc25a34	Gm1369	solute carrier family 25, member 34	protein-coding	5.21171331114973	4.85456378965853	4.34417105046843	5.2123273813391	4.48251882109998	4.79243230386299	3.4857337109209	5.08797998527436	-0.454662417827539	0.267380356689168	0.770194930470086
Merged-chr6-117874977-4	chr6	117874846	117875046	+	933.3624880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12065.0	NM_001001792	22685.0	Mm.249661	NM_008616	ENSMUSG00000042097	Zfp239	Mok-2|Mok2|Znf239	zinc finger protein 239	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-68713767-3	chr3	68713663	68713863	+	883.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22339.0	NM_008351	16159.0	Mm.103783	NM_008351	ENSMUSG00000027776	Il12a	IL-12p35|Il-12a|Ll12a|p35	interleukin 12a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-136898887-4	chr4	136898810	136899010	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007572)	promoter-TSS (NM_007572)	-66.0	NM_007572	12259.0	Mm.439957	NM_007572	ENSMUSG00000036887	C1qa	AI255395|C1q	complement component 1, q subcomponent, alpha polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118675928-3	chr9	118675853	118676053	+	919.111084	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 11 of 27)	RMER1B|Other|Other	-35739.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	3.44982464345676	2.7271530472238	2.01620630444988	3.03158371284859	3.04262336186316	2.74747446931578	1.80842492487351	2.57229098884799	-0.550936218126863	0.479929714695514	0.928518022987937
Merged-chr2-52987301-2	chr2	52987201	52987401	+	572.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	129433.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-71326765-2	chr2	71326665	71326865	+	808.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172436, intron 4 of 17)	B1F|SINE|Alu	40789.0	NM_172436	78830.0	Mm.30928	NM_172436	ENSMUSG00000027010	Slc25a12	2610002D09Rik|AI839531|B230107K20Rik|BB129864	solute carrier family 25 (mitochondrial carrier, Aralar), member 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-118095140-4	chr10	118095034	118095234	+	726.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46653.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	2.37820461919259	3.30682801946621	1.40788718173332	1.87617205218272	2.71522026856626	2.84603474563707	2.33311875484332	3.99309872663308	1.23763056054894	0.146405821966799	0.596422318658231
Merged-chr10-40066670-4	chr10	40066559	40066759	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 3 of 5)	intron (NM_001114332, intron 3 of 5)	-41391.0	NM_144821	215929.0	Mm.55513	NM_144821	ENSMUSG00000038522	Mfsd4b1	AI317395|AI482555|Naglt1a	major facilitator superfamily domain containing 4B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131103928-4	chr1	131103842	131104042	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6099.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	5.18369159030331	4.67907088651685	4.89436947394645	4.77050829082212	4.79785059598391	4.99552725899465	3.90158490620749	5.10750802878088	-0.152323681304898	0.678096682111137	0.994938406979076
Merged-chr2-158174058-4	chr2	158173963	158174163	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17945.0	NR_036606	73399.0	Mm.416861	NR_036606	ENSMUSG00000078957	1700060C20Rik	-	RIKEN cDNA 1700060C20 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-73170088-4	chr14	73169990	73170190	+	882.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134083, intron 10 of 14)	intron (NM_134083, intron 10 of 14)	27305.0	NR_033185	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-65043294-1	chr6	65043194	65043394	+	744.0	f0_balb.idr	promoter-TSS (NM_001253392)	promoter-TSS (NM_001253392)	88.0	NM_001253392	13990.0	Mm.99113	NM_007958	ENSMUSG00000029920	Smarcad1	AV081750|AW226546|D6Pas1|Etl1|etl-1|mKIAA1122	SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-84760205-2	chr12	84760105	84760305	+	930.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023409, intron 3 of 3)	intron (NM_023409, intron 3 of 3)	12907.0	NM_023409	67963.0	Mm.282556	NM_023409	ENSMUSG00000021242	Npc2	2700012J19Rik|AA408070|AU045843|HE1	NPC intracellular cholesterol transporter 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-74017353-4	chr17	74017235	74017435	+	791.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_053188)	TTS (NM_053188)	30581.0	NM_053188	94224.0	Mm.38933	NM_053188	ENSMUSG00000038541	Srd5a2	5ART2|S5AR 2	steroid 5 alpha-reductase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-60744289-4	chr13	60744177	60744377	+	860.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 19 of 26)	intron (NM_134062, intron 19 of 26)	42087.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-120523312-3	chr4	120523193	120523393	+	925.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355424, intron 12 of 14)	intron (NM_001355424, intron 12 of 14)	-8938.0	NM_177570	194219.0	Mm.29788	NM_177570	ENSMUSG00000047518	Slfnl1	4933406A14Rik	schlafen like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70898735-2	chr8	70898635	70898835	+	634.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1292.0	NM_029751	76808.0	Mm.379251	NM_029751	ENSMUSG00000045128	Rpl18a	2510019J09Rik	ribosomal protein L18A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-66110863-3	chr17	66110761	66110961	+	860.2666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001037757)	promoter-TSS (NM_001037757)	-685.0	NM_026833	68767.0	Mm.296545	NM_026833	ENSMUSG00000024101	Washc1	1110049F14Rik|ORF19|Wash|Wash1	WASH complex subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-83482987-7	chr7	83482936	83483136	+	702.552368	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-101895.0	NM_177695	233424.0	Mm.486619	NM_177695	ENSMUSG00000038540	Tmc3	9030203A06	transmembrane channel-like gene family 3	protein-coding	-0.411525459633637	-0.399763329147179	-0.403627563384813	0.206753586487125	-0.268738846529344	-0.398890836114437	-0.402776175457142	0.0132941777730022	-0.342683922446234	0.893009680520655	1
Merged-chr2-12301947-4	chr2	12301838	12302038	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_138462)	promoter-TSS (NR_138462)	6.0	NR_138462	241226.0	Mm.329997	NM_001001309	ENSMUSG00000026768	Itga8	AI447669	integrin alpha 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71296481-4	chr8	71296337	71296537	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142322, intron 2 of 39)	intron (NM_001142322, intron 2 of 39)	23723.0	NM_001142323	17925.0	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-46761384-3	chr14	46761278	46761478	+	988.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360041, intron 1 of 7)	intron (NM_001360041, intron 1 of 7)	837.0	NM_028222	72391.0	Mm.272394	NM_028222	ENSMUSG00000037628	Cdkn3	2410006H10Rik|KAP	cyclin-dependent kinase inhibitor 3	protein-coding	4.26761569160537	4.03508889489169	2.8923142128669	3.63284983473188	3.05773562296394	2.58526123634595	1.54658461780313	2.01820242547177	-2.24254498225717	0.00155680673297398	0.0278512759925071
Merged-chr6-114838534-2	chr6	114838428	114838628	+	667.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253718, intron 19 of 19)	ORR1D1|LTR|ERVL-MaLR	83293.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-84531466-4	chr2	84531371	84531571	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-24598.0	NR_046046	672763.0	Mm.491046	NR_046046	ENSMUSG00000087362	Gm13710	-	predicted gene 13710	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-64771498-3	chr17	64771409	64771609	+	725.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4398.0	NR_105051	101202683.0	Mm.393309	NR_105051		Dreh	-	down-regulated in hepatocellular carcinoma	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-4304194-3	chr18	4304116	4304316	+	968.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48737.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-55195370-2	chr11	55195270	55195470	+	661.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_046034, intron 2 of 2)	intron (NR_046034, intron 2 of 2)	2312.0	NR_046034	74045.0	Mm.292156	NR_046034	ENSMUSG00000084980	Slc36a1os	4921508A21Rik	solute carrier family 36 (proton/amino acid symporter), member 1, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-4676691-2	chr8	4676591	4676791	+	734.799988	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	63521.0	NM_145591	233987.0	Mm.102799	NM_145591	ENSMUSG00000058748	Zfp958	-	zinc finger protein 958	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71126628-2	chr17	71126528	71126728	+	574.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010867, exon 38 of 38)	3' UTR (NM_010867, exon 38 of 38)	-56904.0	NM_001357791	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-22119049-4	chr16	22118961	22119161	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183029, intron 2 of 15)	intron (NM_183029, intron 2 of 15)	44238.0	NM_183029	319765.0	Mm.489442	NM_183029	ENSMUSG00000033581	Igf2bp2	C330012H03Rik|IMP-2|Imp2|Neilsen	insulin-like growth factor 2 mRNA binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-126817847-4	chr1	126817750	126817950	+	860.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176957, intron 1 of 12)	intron (NM_176957, intron 1 of 12)	12782.0	NM_176957	210356.0	Mm.377234	NM_172484	ENSMUSG00000049690	Nckap5	8430408F21|D130011D22Rik|E030049G20Rik|Erih1|Erih2|Gm1548|Nap5	NCK-associated protein 5	protein-coding	1.43411918699924	2.00911212932317	1.69979470530373	1.96980758470255	1.13612042159647	1.00039744946758	2.14335630092395	0.962413447241382	-1.11213647727117	0.365580629257155	0.861036332257394
Merged-chr13-58157664-4	chr13	58157557	58157757	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001048060)	promoter-TSS (NM_001048060)	8.0	NM_198004	75731.0	Mm.293919	NM_198004	ENSMUSG00000050002	Idnk	5133401N09Rik	idnK gluconokinase homolog (E. coli)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-116012714-3	chr5	116012616	116012816	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_031869)	TTS (NM_031869)	11712.0	NM_031869	19079.0	Mm.458152	NM_031869	ENSMUSG00000029513	Prkab1	1300015D22Rik|AU021155|E430008F22	protein kinase, AMP-activated, beta 1 non-catalytic subunit	protein-coding	2.43679076849431	2.91143972327342	1.42393538432537	2.71507744258785	3.33160495716719	3.16318307260815	1.7449718499334	4.54196682993518	1.74866837632893	0.0334758193346908	0.256804910727379
Merged-chr2-128380063-2	chr2	128379963	128380163	+	670.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_028591, intron 1 of 1)	intron (NR_028591, intron 1 of 1)	49288.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	1.93481500949572	1.71470357853667	1.46350702775582	2.57583739293913	1.95096634800045	1.90423963639204	1.47298750527965	2.58940064490118	0.12273871880299	0.901931143496149	0.998431161219273
Merged-chr6-33982881-4	chr6	33982786	33982986	+	952.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46562.0	NM_028886	74354.0	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-44227862-1	chr16	44227762	44227962	+	567.0	f1_balb.idr	TTS (NM_001029889)	TTS (NM_001029889)	54465.0	NM_001029889	207806.0	Mm.310566	NM_001029889	ENSMUSG00000068284	Usf3	5530400K22Rik|Gm1779|Gm608|mKIAA2018	upstream transcription factor family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70005374-3	chr8	70005275	70005475	+	829.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8991.0	NM_145596	234366.0	Mm.270044	NM_145596	ENSMUSG00000036180	Gatad2a	1110066C11Rik|BC031407|C80248	GATA zinc finger domain containing 2A	protein-coding	2.2851921134026	3.79715338409459	2.99340986246236	2.55853222720335	2.95985077574502	3.56122268640377	2.50886022365646	3.11023499688086	0.0787499886042042	0.910106224886592	0.998431161219273
Merged-chr8-126939488-2	chr8	126939388	126939588	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_024214, intron 3 of 4)	MT2A|LTR|ERVL	6433.0	NM_024214	67952.0	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-120028380-4	chr12	120028274	120028474	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	82412.0	NM_001160385	217951.0	Mm.387395	NM_001160385	ENSMUSG00000048004	Tmem196	Gm528	transmembrane protein 196	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-83616417-3	chr9	83616293	83616493	+	706.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	68055.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27820199-2	chr17	27820099	27820299	+	826.099976	f1_balb.idr|f1_c57bl6.idr	exon (NM_001271511, exon 1 of 4)	exon (NM_001271511, exon 1 of 4)	343.0	NM_001033279	224647.0	Mm.196577	NM_001033279	ENSMUSG00000056692	D17Wsu92e	AU020189|C030010A15|C80239	DNA segment, Chr 17, Wayne State University 92, expressed	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114792146-3	chr11	114792050	114792250	+	852.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_028055, exon 3 of 3)	exon (NM_028055, exon 3 of 3)	3742.0	NM_028055	72014.0	Mm.38347	NM_028055	ENSMUSG00000000202	Btbd17	1500005I02Rik|Tango10a	BTB (POZ) domain containing 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180936933-4	chr1	180936833	180937033	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010094, intron 2 of 3)	intron (NM_010094, intron 2 of 3)	1911.0	NM_010094	13590.0	Mm.378911	NM_010094	ENSMUSG00000038793	Lefty1	AI450052|Ebaf|Leftb|Stra3|Tgfb4|lefty|lefty-1	left right determination factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100430524-2	chr7	100430424	100430624	+	566.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001017985, intron 21 of 32)	intron (NM_001017985, intron 21 of 32)	-42467.0	NM_009464	22229.0	Mm.6254	NM_009464	ENSMUSG00000032942	Ucp3	AI645527|Slc25a9|UCP-3	uncoupling protein 3 (mitochondrial, proton carrier)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-22142632-6	chr10	22142474	22142674	+	991.944458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001254744, intron 1 of 1)	intron (NM_001254744, intron 1 of 1)	6696.0	NM_001254744	319887.0	Mm.177746	NM_001254744	ENSMUSG00000097327	E030030I06Rik	-	RIKEN cDNA E030030I06 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-69994878-3	chr9	69994790	69994990	+	920.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001008238, intron 1 of 9)	intron (NM_001008238, intron 1 of 9)	5424.0	NM_001008238	12175.0	Mm.159777	NM_016787	ENSMUSG00000011958	Bnip2	5730523P12Rik|BNIP2beta|Nip21	BCL2/adenovirus E1B interacting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-121791642-4	chr11	121791532	121791732	+	986.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38586.0	NM_029049	74675.0	Mm.61213	NM_029049	ENSMUSG00000039198	Ptchd3	4930451E13Rik|4933440L20Rik|RNDEu-3	patched domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-66312560-2	chr7	66312460	66312660	+	847.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146191, intron 6 of 33)	intron (NM_146191, intron 6 of 33)	69164.0	NR_106024	102465640.0		NR_106024	ENSMUSG00000098353	Mir7057	Gm27550|mmu-mir-7057	microRNA 7057	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-94328413-4	chr11	94328324	94328524	+	979.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027799, intron 1 of 4)	CpG	423.0	NM_146024	71452.0	Mm.141054	NM_027799	ENSMUSG00000020864	Ankrd40	1110011C06Rik|5530600A18Rik|Gcap15	ankyrin repeat domain 40	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69129917-3	chr11	69129878	69130078	+	743.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011786, intron 4 of 14)	intron (NM_011786, intron 4 of 14)	3601.0	NM_011786	23801.0	Mm.41989	NM_011786	ENSMUSG00000020892	Aloxe3	e-LOX-3|eLOX-3	arachidonate lipoxygenase 3	protein-coding	2.14804723791694	1.20608003574184	0.538442527673403	0.945189656705111	0.5063537925117	1.37210585931872	0.542113475901859	0.527695739568677	-2.10553991104557	0.189268784330881	0.667555616405381
Merged-chr17-34838229-2	chr17	34838129	34838329	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_021337)	TTS (NM_021337)	1210.0	NM_001163770	112403.0	Mm.275309	NM_033613	ENSMUSG00000040482	Dxo	Dom3z|NG6	decapping exoribonuclease	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-122801583-12	chr6	122801396	122801596	+	850.493042	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18688.0	NM_021899	60611.0	Mm.87142	NM_021899	ENSMUSG00000003154	Foxj2	Fhx	forkhead box J2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-118041644-1	chr10	118041544	118041744	+	723.0	f0_balb.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-100143.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-134076335-4	chr1	134076238	134076438	+	991.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007570, exon 2 of 2)	3' UTR (NM_007570, exon 2 of 2)	2817.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-97934230-2	chr16	97934130	97934330	+	791.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11597.0	NM_174847	207781.0	Mm.1465	NM_174847	ENSMUSG00000045975	C2cd2	5730563M15|5830404H04Rik|AI314146|AI449533|BF168443|ORF25|mKIAA4045	C2 calcium-dependent domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-96910110-4	chr10	96910008	96910208	+	993.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-125660.0	NR_045358	75301.0	Mm.108650	NR_045358	ENSMUSG00000111924	4930556N09Rik	-	RIKEN cDNA 4930556N09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-36161332-4	chr17	36161236	36161436	+	898.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033517, exon 4 of 4)	non-coding (NR_033517, exon 4 of 4)	7201.0	NM_001081032	667977.0	Mm.441651	NM_001081032	ENSMUSG00000073402	Gm8909	EG667977|H2-Tw5l|H2-gs17	predicted gene 8909	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-86378795-4	chr17	86378691	86378891	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011104, intron 2 of 14)	intron (NM_011104, intron 2 of 14)	-91613.0	NR_045435	72104.0	Mm.443401	NR_045435	ENSMUSG00000100738	2010106C02Rik	-	RIKEN cDNA 2010106C02 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-51433202-4	chr10	51433126	51433326	+	962.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47386.0	NM_008147	14727.0	Mm.439661	NM_008147	ENSMUSG00000112023	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100582923-4	chr7	100582833	100583033	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_003559, intron 1 of 7)	CpG	197.0	NM_198831	52443.0	Mm.473730	NM_198831	ENSMUSG00000030706	Mrpl48	1810030E20Rik|2610028L11Rik|CGI-118|D4Ertd786e|L48mt|MRP-L48	mitochondrial ribosomal protein L48	protein-coding	4.71104873967304	4.68285211792648	5.53440596996328	5.43022319544258	5.18021257353853	5.01458652400427	5.67115151896405	5.03650381350774	0.124713204510256	0.708406306904666	0.998431161219273
Merged-chr16-90280645-4	chr16	90280508	90280708	+	733.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346799, intron 1 of 19)	intron (NM_001346799, intron 1 of 19)	3878.0	NM_001346799	224432.0	Mm.439811	NM_178923	ENSMUSG00000022983	Scaf4	AA517739|Sfrs15|Sra4|Srsf15	SR-related CTD-associated factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141468705-1	chr4	141468605	141468805	+	542.0	f1_balb.idr	TTS (NM_009541)	TTS (NM_009541)	24032.0	NM_009541	22642.0	Mm.389590	NM_009541	ENSMUSG00000006215	Zbtb17	AA589413|Lp-1|Miz1|Zfp100|mZ13	zinc finger and BTB domain containing 17	protein-coding	0.589063671282592	0.160102621064269	0.15482367188281	0.551691661005759	0.683386092860262	0.161295342483855	0.155986266246683	0.441064975178051	0.00451043829020895	0.998222266894477	1
Merged-chr5-24602216-3	chr5	24602139	24602339	+	850.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025891)	promoter-TSS (NM_025891)	-237.0	NM_025891	66993.0	Mm.436539	NM_025891	ENSMUSG00000028949	Smarcd3	1500001J14Rik|2210409C08Rik|BAF60C	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-145269450-1	chr7	145269350	145269550	+	998.0	f1_c57bl6.idr	intron (NR_132643, intron 8 of 22)	intron (NR_132643, intron 8 of 22)	14561.0	NR_132644	233979.0	Mm.102235	NM_146206	ENSMUSG00000048677	Tpcn2	D830047E22Rik|Gm35086	two pore segment channel 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125341806-1	chr6	125341706	125341906	+	861.0	f1_c57bl6.idr	intron (NM_011324, intron 7 of 11)	L1MB7|LINE|L1	-7917.0	NM_011609	21937.0	Mm.1258	NM_011609	ENSMUSG00000030341	Tnfrsf1a	CD120a|FPF|TNF-R|TNF-R-I|TNF-R1|TNF-R55|TNF-alphaR1|TNFAR|TNFR60|TNFRI|TNFRp55|TNFalpha-R1|Tnfr-2|Tnfr1|p55|p55-R	tumor necrosis factor receptor superfamily, member 1a	protein-coding	0.793632538326011	0.737950793768935	0.187183836857756	0.180981921904301	0.172133389508246	0.196938539883664	1.1272959836719	0.182068863629417	-0.00152912977023357	0.99940790087182	1
Merged-chr10-14131249-4	chr10	14131179	14131379	+	963.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010437, exon 4 of 9)	exon (NM_010437, exon 4 of 9)	164900.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-80339275-2	chr1	80339175	80339375	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016716, intron 1 of 15)	intron (NM_016716, intron 1 of 15)	1415.0	NM_001313728	26554.0	Mm.12665	NM_016716	ENSMUSG00000004364	Cul3	KIAA0617	cullin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10694076-4	chr19	10693988	10694188	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361958, intron 1 of 4)	L1MB3|LINE|L1	5353.0	NM_001361959	107305.0	Mm.19091	NM_181403	ENSMUSG00000048832	Vps37c	5730409F24Rik|AU042646	vacuolar protein sorting 37C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-132029245-4	chr2	132029129	132029329	+	981.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175445, intron 1 of 10)	CpG	759.0	NM_175445	215653.0	Mm.204737	NM_175445	ENSMUSG00000027339	Rassf2	3830431H01Rik|9030412M04Rik|AI852669|AW495050	Ras association (RalGDS/AF-6) domain family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-50245829-2	chr11	50245729	50245929	+	743.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-7297.0	NR_132733	17001.0	Mm.245151	NM_008521	ENSMUSG00000020377	Ltc4s	-	leukotriene C4 synthase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-21808771-4	chr3	21808659	21808859	+	995.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-267893.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19886542-2	chr7	19886409	19886609	+	813.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_177036, exon 2 of 7)	exon (NM_177036, exon 2 of 7)	1456.0	NM_177036	319930.0	Mm.215839	NM_177036	ENSMUSG00000049848	Ceacam19	C130022P09Rik|CEAL1	carcinoembryonic antigen-related cell adhesion molecule 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-25061862-3	chr16	25061767	25061967	+	916.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040374, intron 1 of 2)	intron (NR_040374, intron 1 of 2)	2228.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-53267788-4	chr18	53267678	53267878	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029394, intron 1 of 6)	MMAR1|DNA|TcMar-Mariner	22116.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-180251423-4	chr2	180251323	180251523	+	973.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5956.0	NM_025587	66481.0	Mm.289669	NM_025587	ENSMUSG00000039001	Rps21	1810049N11Rik|2410030A14Rik	ribosomal protein S21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-37234017-2	chr10	37233917	37234117	+	573.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-95091.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117993688-4	chr11	117993587	117993787	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151726, intron 1 of 9)	intron (NR_151726, intron 1 of 9)	6830.0	NR_151726	74451.0	Mm.28864	NM_133757	ENSMUSG00000017715	Pgs1	2610019F11Rik|4933424M23Rik|SAF	phosphatidylglycerophosphate synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-73777729-2	chr12	73777629	73777829	+	600.666626	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001313977, exon 15 of 15)	3' UTR (NM_001313977, exon 15 of 15)	-123595.0	NM_001313920	15251.0	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-122872128-4	chr4	122872043	122872243	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007598, intron 2 of 12)	intron (NM_007598, intron 2 of 12)	13933.0	NM_001358035	12331.0	Mm.8687	NM_007598	ENSMUSG00000028656	Cap1	-	CAP, adenylate cyclase-associated protein 1 (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-39381269-3	chr6	39381204	39381404	+	803.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011226)	promoter-TSS (NM_011226)	-49.0	NM_011226	19331.0	Mm.123866	NM_011226	ENSMUSG00000029923	Rab19	-	RAB19, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-91057745-4	chr1	91057592	91057792	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008515, intron 1 of 22)	intron (NM_008515, intron 1 of 22)	4248.0	NM_001310732	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94962119-2	chr10	94962019	94962219	+	638.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17541.0	NM_018797	54712.0	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-89168770-3	chr7	89168676	89168876	+	587.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360746, intron 6 of 14)	intron (NM_001360746, intron 6 of 14)	170011.0	NM_028343	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-122847065-2	chr4	122846953	122847153	+	782.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008917, intron 4 of 8)	B2_Mm1a|SINE|B2	10826.0	NM_008917	19063.0	Mm.277719	NM_008917	ENSMUSG00000028657	Ppt1	9530043G02Rik|AA960502|C77813|CLN1|D4Ertd184e|INCL|PPT	palmitoyl-protein thioesterase 1	protein-coding	2.12067088864022	1.13482274900645	1.35444283349057	1.81532679991711	1.73344404840368	1.4051352230365	2.01624716334184	2.74459724144649	1.08676056366853	0.316968593245468	0.82031690719567
Merged-chr4-149617114-6	chr4	149616983	149617183	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290989, intron 2 of 17)	intron (NM_001290989, intron 2 of 17)	30615.0	NM_023051	65945.0	Mm.38993	NM_023051	ENSMUSG00000039953	Clstn1	1810034E21Rik|Cst-1|Cstn1	calsyntenin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-117183259-2	chr4	117183159	117183359	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134471)	promoter-TSS (NM_134471)	-635.0	NM_134471	73804.0	Mm.247651	NM_134471	ENSMUSG00000028678	Kif2c	4930402F02Rik|ESTM5|Knsl6|MCAK|X83316	kinesin family member 2C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-60257586-4	chr10	60257481	60257681	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-20047.0	NM_001146123	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91397146-2	chr16	91397046	91397246	+	696.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347258, intron 7 of 7)	intron (NM_001347258, intron 7 of 7)	-9089.0	NM_008349	16155.0	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-87266286-4	chr12	87266162	87266362	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001142580)	promoter-TSS (NM_001142580)	24.0	NM_001142580	104799.0	Mm.208750	NM_134044	ENSMUSG00000021038	Vipas39	6720456H09Rik|9330175H22Rik|AI413782|SPE-39|Spe39|Vipar|hSPE-39	VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-100844125-2	chr13	100844025	100844225	+	781.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-10698.0	NM_022885	69048.0	Mm.402215	NM_022885	ENSMUSG00000021629	Slc30a5	1810010K08Rik|AF233321|ZNT5|ZTL1|ZnT-5|Zntl1	solute carrier family 30 (zinc transporter), member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-61452455-4	chr18	61452353	61452553	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32154.0	NR_045419	442846.0	Mm.417648	NR_045419		A530050N04Rik	-	RIKEN cDNA A530050N04 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-83170206-2	chr15	83170106	83170306	+	988.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_029787, intron 1 of 8)	intron (NM_029787, intron 1 of 8)	2002.0	NM_029787	109754.0	Mm.22560	NM_029787	ENSMUSG00000018042	Cyb5r3	0610016L08Rik|2500002N19Rik|C85115|Dia-1|Dia1|WU:AL591952.1-001|WU:AL591952.1-002|WU:AL591952.1-003|WU:Cyb5r3	cytochrome b5 reductase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-82567450-2	chr18	82567350	82567550	+	777.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025251, intron 2 of 6)	intron (NM_001025251, intron 2 of 6)	12942.0	NM_001025254	17196.0	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-82223635-4	chr12	82223534	82223734	+	998.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167983, intron 1 of 23)	intron (NM_001167983, intron 1 of 23)	53618.0	NM_001167983	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-117918924-4	chr4	117918832	117919032	+	668.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-3933.0	NM_146152	230673.0	Mm.287810	NM_146152	ENSMUSG00000033365	Ipo13	Imp13|Kap13|Ranbp13	importin 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-60818305-3	chr2	60818210	60818410	+	776.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001141932, intron 2 of 14)	intron (NM_001141932, intron 2 of 14)	63128.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-50774117-4	chr9	50774023	50774223	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1102.0	NM_133981	102580.0	Mm.160035	NM_133981	ENSMUSG00000032059	Alg9	8230402H15Rik|AI747665|B430313H07Rik|Dibd1	asparagine-linked glycosylation 9 (alpha 1,2 mannosyltransferase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-52729149-3	chr3	52729060	52729260	+	826.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10564.0	NR_038079	329639.0	Mm.131245	NR_038079	ENSMUSG00000102785	Gm2447	100039832|A530017F20	predicted gene 2447	ncRNA	2.69673046280021	1.18804823435087	2.50662887039651	2.34370427677933	1.09780407504486	2.18610400513407	1.97264676035048	1.38564729018239	-1.40332383189642	0.198654364454896	0.682127729065762
Merged-chr1-92981274-3	chr1	92981180	92981380	+	931.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022320, intron 1 of 1)	intron (NM_022320, intron 1 of 1)	2377.0	NM_022320	64095.0	Mm.152780	NM_022320	ENSMUSG00000026271	Gpr35	KPG_007	G protein-coupled receptor 35	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-57919331-3	chr15	57919221	57919421	+	826.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356310, intron 2 of 19)	RMER1C|Other|Other	7122.0	NM_001356310	210544.0	Mm.390835	NM_199300	ENSMUSG00000022364	Tbc1d31	4B3|D330013L20Rik|Gm85|Wdr67	TBC1 domain family, member 31	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-41237664-2	chr12	41237564	41237764	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_053122, intron 4 of 6)	intron (NM_053122, intron 4 of 6)	213574.0	NM_053122	93757.0	Mm.363813	NM_053122	ENSMUSG00000056899	Immp2l	AI853880|IMP2|Tg(HLA-A/H2-D)2Enge	IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-78234256-2	chr16	78234156	78234356	+	940.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	21198.0	NR_045698	100503619.0	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-59549447-4	chr4	59549343	59549543	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178164)	promoter-TSS (NM_178164)	-79.0	NM_144904	230257.0	Mm.331640	NM_144904	ENSMUSG00000028382	Ptbp3	5830471K22Rik|AA407443|AI462022|AW107884|C86549|Rod1	polypyrimidine tract binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30206540-2	chr2	30206440	30206640	+	804.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356474)	promoter-TSS (NM_001356474)	-693.0	NM_172404	70266.0	Mm.216089	NM_172404	ENSMUSG00000039648	Kyat1	2010009K05Rik|AI182306|Ccbl1|Gtk|Kat1|KatI	kynurenine aminotransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-144248429-4	chr1	144248341	144248541	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015811, intron 2 of 4)	intron (NM_015811, intron 2 of 4)	663.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-89181803-4	chr18	89181694	89181894	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15633.0	NM_178687	225825.0	Mm.139293	NM_178687	ENSMUSG00000034028	Cd226	BC051526|DNAM-1|DNAM1|Pta1|TLiSA1	CD226 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-45530086-4	chr4	45530096	45530296	+	974.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001033306, exon 1 of 6)	exon (NM_001033306, exon 1 of 6)	632.0	NM_001033306	230126.0	Mm.251716	NM_001033306	ENSMUSG00000044813	Shb	BC028832	src homology 2 domain-containing transforming protein B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-75892946-2	chr7	75892846	75893046	+	605.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	44608.0	NM_029652	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-8621870-4	chr11	8621790	8621990	+	863.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 1 of 30)	intron (NM_001083587, intron 1 of 30)	42645.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-126902749-2	chr10	126902649	126902849	+	864.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-1378.0	NM_001358970	68876.0	Mm.276769	NM_026858	ENSMUSG00000025436	Atp23	1110068E08Rik|2410012H02Rik|Xrcc6bp1	ATP23 metallopeptidase and ATP synthase assembly factor homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-25535585-4	chr8	25535484	25535684	+	966.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001079909, intron 2 of 16)	intron (NM_001079909, intron 2 of 16)	16825.0	NM_001079908	14182.0	Mm.265716	NM_010206	ENSMUSG00000031565	Fgfr1	AW208770|Eask|FGFR-I|FLG|Fgfr-1|Flt-2|Hspy|MFR|bFGF-R-1|c-fgr	fibroblast growth factor receptor 1	protein-coding	3.10841957927333	1.61959790052107	4.08532387315267	3.01837133137566	1.91848890061721	2.89571841865503	3.92098323500196	3.44718596379264	0.0183391631794419	0.981576886772631	0.998431161219273
Merged-chr11-116871809-1	chr11	116871709	116871909	+	561.0	f1_balb.idr	intron (NM_178620, intron 11 of 12)	intron (NM_178620, intron 11 of 12)	17809.0	NM_001361586	69900.0	Mm.348004	NM_178620	ENSMUSG00000020818	Mfsd11	2600014M03Rik	major facilitator superfamily domain containing 11	protein-coding	-1.06932346315282	-1.04545378193536	-0.220844647149311	-1.06494782147003	-1.06867040657128	-1.04264807175102	-1.05547001227371	-1.06448932552894	-3.08190232315036	0.346744811462451	1
Merged-chr6-13601789-4	chr6	13601673	13601873	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155435, intron 1 of 3)	intron (NR_155435, intron 1 of 3)	6325.0	NR_155435	101118.0	Mm.254845	NM_028990	ENSMUSG00000029569	Tmem168	5730526F17Rik|8430437G11Rik|AI462344|AI504145	transmembrane protein 168	protein-coding	5.16334380330113	5.67246769265459	5.64486494828542	4.828373943981	5.28117569637701	6.33644067936766	6.51931115328675	5.15327418587423	0.653897267275135	0.0591906527304229	0.359688409121223
Merged-chr16-49791172-4	chr16	49791070	49791270	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64484.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-53569061-2	chr17	53568961	53569161	+	787.833313	f1_balb.idr|f1_c57bl6.idr	intron (NR_151733, intron 1 of 16)	intron (NR_151733, intron 1 of 16)	2090.0	NR_151733	18519.0	Mm.255025	NM_020005	ENSMUSG00000000708	Kat2b	A930006P13Rik|AI461839|AW536563|Pcaf|p/CAF	K(lysine) acetyltransferase 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16426321-4	chr7	16426163	16426363	+	880.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198631, intron 10 of 13)	intron (NM_198631, intron 10 of 13)	25067.0	NM_198631	330474.0	Mm.333594	NM_198631	ENSMUSG00000059273	Zc3h4	Bwq1|Gm768|Kiaa1064-hp|mKIAA1064	zinc finger CCCH-type containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-95163395-4	chr4	95163265	95163465	+	952.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-111143.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-134322661-2	chr1	134322561	134322761	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001144855, intron 11 of 28)	intron (NM_001144855, intron 11 of 28)	10267.0	NM_001144855	68507.0	Mm.295105	NM_001144855	ENSMUSG00000026458	Ppfia4	100042382|1110008G13Rik|AI448359|AI852265|C81506|Gm3812	protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-41844366-4	chr5	41844272	41844472	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310601)	promoter-TSS (NM_001310601)	-57.0	NM_001081422	665775.0	Mm.158726	NM_001081422	ENSMUSG00000061755	Bod1l	A230054D04Rik|AI853319|FAM44A|mKIAA1327	biorientation of chromosomes in cell division 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-99430879-4	chr10	99430773	99430973	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	167642.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-46630533-4	chr4	46630428	46630628	+	974.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198664, intron 3 of 12)	intron (NM_198664, intron 3 of 12)	19671.0	NM_198664	381605.0	Mm.331595	NM_198664	ENSMUSG00000039813	Tbc1d2	A630005A06Rik|BC022630|Gm1037|PARIS-1|PARIS1	TBC1 domain family, member 2	protein-coding	4.35285158725824	6.00111922595712	4.32319367187366	4.43047445856781	5.13147046334311	5.11827522594543	4.29229421021412	6.32205832128812	0.496215195927455	0.469117345626128	0.924757197727779
Merged-chr16-31949225-3	chr16	31949158	31949358	+	963.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027897)	promoter-TSS (NR_027897)	712.0	NM_026554	68092.0	Mm.290027	NM_026554	ENSMUSG00000022774	Ncbp2	20kDa|5930413E18Rik|AA536802|AI843301|C79367	nuclear cap binding protein subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-163017219-4	chr2	163017104	163017304	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172150)	promoter-TSS (NM_172150)	-149.0	NM_172150	245866.0	Mm.34034	NM_172150	ENSMUSG00000017858	Ift52	BC037708|NGD5	intraflagellar transport 52	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129600665-4	chr4	129600551	129600751	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029748)	promoter-TSS (NM_029748)	-3.0	NM_018799	54709.0	Mm.250874	NM_018799	ENSMUSG00000028798	Eif3i	36kDa|D4Ertd632e|Eif3s2|Trip1	eukaryotic translation initiation factor 3, subunit I	protein-coding	4.40966715913692	3.35959318785813	3.41625609673155	2.24570317842589	3.94605904175647	1.65723096876133	2.95041337647361	2.72751264270876	-0.769862737374004	0.316204356440096	0.819045740191769
Merged-chr3-131303193-4	chr3	131303095	131303295	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027816)	promoter-TSS (NM_027816)	32.0	NM_027816	71519.0	Mm.473179	NM_027816	ENSMUSG00000027983	Cyp2u1	8430436A10Rik	cytochrome P450, family 2, subfamily u, polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81341739-3	chr10	81341627	81341827	+	739.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_148951, intron 1 of 5)	intron (NM_148951, intron 1 of 5)	1539.0	NM_148951	209047.0	Mm.218755	NM_148951	ENSMUSG00000034872	Gipc3	Ahl5|Rgs19ip3	GIPC PDZ domain containing family, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-76275170-4	chr5	76275067	76275267	+	830.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007715, intron 2 of 22)	intron (NM_007715, intron 2 of 22)	28335.0	NM_001305222	12753.0	Mm.3552	NM_007715	ENSMUSG00000029238	Clock	5330400M04Rik|KAT13D	circadian locomotor output cycles kaput	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-34180004-1	chr13	34179904	34180104	+	569.0	f0_balb.idr	3' UTR (NM_001033167, exon 11 of 11)	3' UTR (NM_001033167, exon 11 of 11)	17040.0	NM_001110515	69666.0	Mm.24788	NM_001101430	ENSMUSG00000071451	Psmg4	PAC-4|mPAC4	proteasome (prosome, macropain) assembly chaperone 4	protein-coding	-1.18168469194181	-1.15762136968968	-1.16824599128578	-1.17697337180399	-0.705222168910091	-1.15531896986813	-1.1658408098415	-1.01281529573356	2.56112959364474	0.434927719140263	1
Merged-chr10-80706963-2	chr10	80706863	80707063	+	745.75	f1_balb.idr|f1_c57bl6.idr	TTS (NM_007460)	TTS (NM_007460)	4270.0	NM_027829	71564.0	Mm.35802	NM_027829	ENSMUSG00000055862	Izumo4	9030607L17Rik|AI550407	IZUMO family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-99192798-1	chr13	99192698	99192898	+	708.0	f0_balb.idr	intron (NM_001004149, intron 1 of 4)	intron (NM_001004149, intron 1 of 4)	7975.0	NM_001004149	238803.0	Mm.343207	NM_001004149	ENSMUSG00000050919	Zfp366	DC-SCRIPT|Znf366	zinc finger protein 366	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-60659116-4	chr19	60659024	60659224	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-78101.0	NM_001172096	78832.0	Mm.259026	NM_030197	ENSMUSG00000033417	Cacul1	2700078E11Rik|2810417M16Rik|9830127L17Rik|AI450346|D130033C15Rik	CDK2 associated, cullin domain 1	protein-coding	3.67159665544235	3.4676300181783	3.83918344615294	3.92045933364655	3.28237627139491	4.35166997720269	3.9968222438886	2.79592628826836	-0.00497561689639942	0.992690131126453	0.998431161219273
Merged-chr19-34475861-2	chr19	34475761	34475961	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009890)	promoter-TSS (NM_009890)	-726.0	NM_009890	12642.0	Mm.30824	NM_009890	ENSMUSG00000050370	Ch25h	AI462618|m25OH	cholesterol 25-hydroxylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-82400092-2	chr8	82399992	82400192	+	579.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001254747, intron 1 of 7)	intron (NM_001254747, intron 1 of 7)	2494.0	NM_001254747	16168.0	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-100463983-2	chr9	100463883	100464083	+	795.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033543, intron 5 of 6)	ORR1E|LTR|ERVL-MaLR	22490.0	NM_001033543	213208.0	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-104639661-3	chr3	104639563	104639763	+	819.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009196, intron 1 of 4)	intron (NM_009196, intron 1 of 4)	999.0	NM_009196	20501.0	Mm.9086	NM_009196	ENSMUSG00000032902	Slc16a1	AL022710|Mct1	solute carrier family 16 (monocarboxylic acid transporters), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-74721043-4	chr15	74720905	74721105	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198607)	promoter-TSS (NM_198607)	-229.0	NM_198607	223626.0	Mm.268603	NM_198607	ENSMUSG00000056665	Them6	4930572J05Rik	thioesterase superfamily member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41896211-4	chr19	41896107	41896307	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199447)	promoter-TSS (NM_199447)	-54.0	NM_199447	107094.0	Mm.276044	NM_199447	ENSMUSG00000035049	Rrp12	AA408556|AA536972|mKIAA0690	ribosomal RNA processing 12 homolog (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-110563050-4	chr13	110562954	110563154	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	168010.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-75641959-4	chr7	75641854	75642054	+	888.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 8 of 36)	intron (NM_029332, intron 8 of 36)	186420.0	NM_029332	75547.0	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	2.78949942670801	1.63065039228909	3.19909746344792	2.62872217335049	3.18637500143963	3.05358993094904	3.50897955045142	2.64259760451317	0.807902123652505	0.269706053845908	0.772959591673376
Merged-chr13-89741469-2	chr13	89741413	89741613	+	685.041626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081249, intron 1 of 14)	intron (NM_001081249, intron 1 of 14)	999.0	NM_001081249	13003.0	Mm.158700	NM_019389	ENSMUSG00000021614	Vcan	5430420N07Rik|9430051N09|Cspg2|DPEAAE|NG2|PG-M|PG-M(V0)|PG-M(V1)|hdf	versican	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-131233992-4	chr2	131233892	131234092	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001206385)	promoter-TSS (NM_001206385)	-71.0	NM_001206383	228607.0	Mm.287226	NM_144888	ENSMUSG00000037523	Mavs	D430028G21Rik|IPS-1|Visa|cardif	mitochondrial antiviral signaling protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-129063503-3	chr5	129063431	129063631	+	885.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33219.0	NM_001081342	243277.0	Mm.440501	NM_177734	ENSMUSG00000044017	Adgrd1	E230012M21Rik|Gpr133	adhesion G protein-coupled receptor D1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-105780056-2	chr1	105779956	105780156	+	593.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009399)	promoter-TSS (NM_009399)	-667.0	NM_009399	21934.0	Mm.6251	NM_009399	ENSMUSG00000026321	Tnfrsf11a	Ly109|ODFR|OFE|Rank|TRANCE-R|mRANK	tumor necrosis factor receptor superfamily, member 11a, NFKB activator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-22267401-2	chr16	22267301	22267501	+	578.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1396.0	NM_001330555	20462.0	Mm.210352	NM_009186	ENSMUSG00000022858	Tra2b	5730405G21Rik|D16Ertd266e|SIG-41|Sfrs10|Silg41|TRA2beta	transformer 2 beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-78177056-4	chr9	78176993	78177193	+	896.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040401, exon 3 of 4)	non-coding (NR_040401, exon 3 of 4)	1179.0	NR_040401	320295.0	Mm.131285	NR_040401	ENSMUSG00000097574	C920006O11Rik	-	RIKEN cDNA C920006O11 gene	ncRNA	3.36597139461529	3.68838872530214	2.83145017442661	3.61592748564284	4.00082242908616	3.86707255226261	2.99127906453805	3.76537609480978	0.453281061023597	0.407812937327009	0.891845785649541
Merged-chr17-35859185-2	chr17	35859085	35859285	+	562.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001010833, exon 16 of 16)	3' UTR (NM_001010833, exon 16 of 16)	-2133.0	NM_134122	106582.0	Mm.390992	NM_134122	ENSMUSG00000059791	Nrm	2610307M02Rik|AI429796	nurim (nuclear envelope membrane protein)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-100776663-1	chr12	100776563	100776763	+	563.0	f0_c57.idr	Intergenic	Intergenic	-2394.0	NM_001361023	217830.0	Mm.218590	NM_145448	ENSMUSG00000021185	Dglucy	9030617O03Rik	D-glutamate cyclase	protein-coding	2.19543076794872	1.95624884101923	1.53006684816859	2.21426401799086	2.30063830593345	1.32492742569762	2.49508335187571	2.41768016548829	0.530623973184185	0.585302083473182	0.967268722441911
Merged-chr6-118141950-2	chr6	118141850	118142050	+	683.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-2810.0	NM_030165	78752.0	Mm.300317	NM_030165	ENSMUSG00000042042	Csgalnact2	4632415D10Rik|Galnact2	chondroitin sulfate N-acetylgalactosaminyltransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-118959539-2	chr14	118959439	118959639	+	576.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008929, intron 3 of 11)	ORR1F|LTR|ERVL-MaLR	21607.0	NM_008929	100037258.0	Mm.12616	NM_008929	ENSMUSG00000022136	Dnajc3	AA408985|AU067833|Dnajc3a|Dnajc3b|Prkri|mp58|p58|p58IPK	DnaJ heat shock protein family (Hsp40) member C3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-51187283-2	chr3	51187183	51187383	+	759.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A|LTR|ERVL-MaLR	-37164.0	NM_009834	12457.0	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	1.61090700732483	2.32512530652259	0.903371739942123	1.29652749635462	1.51278486916654	1.97165079140956	1.14930627544944	0.890122682685334	-0.609728806640739	0.630825138867013	0.981465575333797
Merged-chr12-82265737-7	chr12	82265633	82265833	+	853.005981	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167983, intron 2 of 23)	intron (NM_001167983, intron 2 of 23)	-45616.0	NM_172579	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117864905-4	chr11	117864830	117865030	+	968.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001085535, exon 4 of 4)	3' UTR (NM_001085535, exon 4 of 4)	4178.0	NM_001085535	546519.0	Mm.385578	NM_001085535	ENSMUSG00000070330	Tmem235	Cldn27|Gm12581	transmembrane protein 235	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-29641222-4	chr19	29641113	29641313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362131, intron 2 of 14)	intron (NM_001362131, intron 2 of 14)	7202.0	NM_001081213	226090.0	Mm.267131	NM_001081213	ENSMUSG00000046324	Ermp1	D19Ertd410e|D19Wsu12e|Fxna|b2b2633Clo|mKIAA1815	endoplasmic reticulum metallopeptidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-55587135-3	chr13	55587033	55587233	+	750.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	T-rich|Low_complexity|Low_complexity	-6002.0	NM_026211	67511.0	Mm.45233	NM_026211	ENSMUSG00000058569	Tmed9	2400003B06Rik	transmembrane p24 trafficking protein 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-92318789-4	chr5	92318681	92318881	+	947.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR33C|LTR|ERVL	-8757.0	NM_172713	231452.0	Mm.86564	NM_172713	ENSMUSG00000029415	Sdad1	4931421J16|AA591032|AW538460	SDA1 domain containing 1	protein-coding	1.99665178744193	2.5594008807879	2.81605161050534	2.63454091798719	2.1617728043174	3.36060165925671	1.99711699827466	3.28384708384327	0.616726129147857	0.435934458095019	0.907834077091723
Merged-chr2-153342781-4	chr2	153342689	153342889	+	831.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040318, exon 2 of 2)	non-coding (NR_040318, exon 2 of 2)	3021.0	NR_040318	72326.0	Mm.400102	NR_040318	ENSMUSG00000073236	2500004C02Rik	-	RIKEN cDNA 2500004C02 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123252050-3	chr5	123251951	123252151	+	922.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23861.0	NM_026000	67151.0	Mm.278997	NM_026000	ENSMUSG00000029440	Psmd9	1500011J20Rik|2610202L11Rik|Bridge-1|P27	proteasome (prosome, macropain) 26S subunit, non-ATPase, 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-40575234-4	chr9	40575137	40575337	+	918.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43854.0	NM_001357617	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	3.4560795609865	5.00550928296837	5.56717441152782	4.23140688823453	3.94728584824334	3.18149432118104	3.62544622385118	2.46049223092866	-1.79863529355923	0.00133455992242979	0.0246086833237386
Merged-chr3-19215228-2	chr3	19215128	19215328	+	810.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356295, intron 4 of 7)	intron (NM_001356295, intron 4 of 7)	26933.0	NM_001356295	67472.0	Mm.45125	NM_026182	ENSMUSG00000027601	Mtfr1	1300002C08Rik|1700080D04Rik|2810026O10Rik|4930579E05Rik|Chppr|Fam54a2	mitochondrial fission regulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-104936013-2	chr14	104935913	104936113	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_015593, intron 3 of 5)	intron (NR_015593, intron 3 of 5)	178663.0	NR_040628	100502987.0	Mm.124957	NR_040628		Gm17066	-	predicted gene 17066	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4906205-2	chr16	4906105	4906305	+	782.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357062, intron 1 of 17)	intron (NM_001357062, intron 1 of 17)	20105.0	NM_001357061	17237.0	Mm.291326	NM_029657	ENSMUSG00000022517	Mgrn1	2610042J20Rik|mKIAA0544|md|nc	mahogunin, ring finger 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-77896148-3	chr14	77896079	77896279	+	896.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8060.0	NM_178825	108670.0	Mm.68134	NM_029495	ENSMUSG00000022014	Epsti1	2310046K10Rik|5033415K03Rik|BRESI1	epithelial stromal interaction 1 (breast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-14062714-4	chr13	14062616	14062816	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001331178, intron 1 of 4)	intron (NM_001331178, intron 1 of 4)	772.0	NM_001331119	14593.0	Mm.148039	NM_010282	ENSMUSG00000021302	Ggps1	1810026C22Rik|9530089B04Rik|AI843169|C79210	geranylgeranyl diphosphate synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-10520866-2	chr16	10520766	10520966	+	559.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007575, intron 14 of 18)	intron (NM_007575, intron 14 of 18)	22188.0	NM_021428	58239.0	Mm.353006	NM_021428	ENSMUSG00000038055	Dexi	1810029J14Rik|AI836170|AW413143|D16Bwg0586e|Myle	dexamethasone-induced transcript	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-52957191-2	chr2	52957091	52957291	+	612.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	B1_Mm|SINE|Alu	99323.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3389929-2	chr19	3389829	3390029	+	781.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286558, intron 1 of 8)	ID|SINE|ID	551.0	NM_001286558	17771.0	Mm.209941	NM_010841	ENSMUSG00000024905	Tesmin	Mtl5	testis expressed metallothionein like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-134352936-4	chr5	134352823	134353023	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26469.0	NR_039544	100628570.0		NR_039544	ENSMUSG00000093311	Mir3965	mmu-mir-3965|mu-mir-3965	microRNA 3965	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-86344521-4	chr1	86344422	86344622	+	996.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010880)	TTS (NM_010880)	6763.0	NR_028478	100303740.0	Mm.154378	NR_028478	ENSMUSG00000064837	Snora75	MBI-55	small nucleolar RNA, H/ACA box 75	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-105293808-3	chr5	105293710	105293910	+	893.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_194336)	promoter-TSS (NM_194336)	-111.0	NM_194336	100702.0	Mm.491210	NM_194336	ENSMUSG00000104713	Gbp6	AI595338|Mpa2l	guanylate binding protein 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-94370819-6	chr8	94370619	94370819	+	868.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15710.0	NM_001357205	64209.0	Mm.29151	NM_022331	ENSMUSG00000031770	Herpud1	Herp|Mifl|SUP	homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-92868642-4	chr16	92868468	92868668	+	955.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42494.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69414619-4	chr11	69414500	69414700	+	930.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001017426)	promoter-TSS (NM_001017426)	-925.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	-1.36015291771705	-1.32842431658676	-1.33874579108173	-1.34722415754512	-1.35969949349639	-1.32618761000664	-1.33640923549635	-0.791042329471244	2.42373733289067	0.484013421080845	1
Merged-chr11-117077788-2	chr11	117077688	117077888	+	713.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_105853)	TTS (NR_105853)	440.0	NR_105853	102465258.0		NR_105853	ENSMUSG00000104740	Mir6516	mmu-mir-6516	microRNA 6516	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-82042165-3	chr6	82042090	82042290	+	892.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145570, intron 1 of 2)	intron (NM_145570, intron 1 of 2)	562.0	NM_145570	232146.0	Mm.489683	NM_145570	ENSMUSG00000035104	Eva1a	BC014699|Fam176a|Tmem166	eva-1 homolog A (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-38232377-4	chr18	38232278	38232478	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17820.0	NR_015475	73516.0	Mm.48776	NR_015475	ENSMUSG00000097080	1700086O06Rik	-	RIKEN cDNA 1700086O06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120489475-4	chr11	120489384	120489584	+	994.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_027204)	TTS (NM_027204)	-2353.0	NM_013770	27376.0	Mm.3991	NM_013770	ENSMUSG00000025792	Slc25a10	Dic	solute carrier family 25 (mitochondrial carrier, dicarboxylate transporter), member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-8668884-2	chr3	8668784	8668984	+	620.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1846.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-160268551-1	chr1	160268451	160268651	+	755.0	f1_c57bl6.idr	intron (NM_001038621, intron 2 of 8)	intron (NM_001038621, intron 2 of 8)	27421.0	NR_035448	100316784.0		NR_035448	ENSMUSG00000089204	Mir1927	mmu-mir-1927	microRNA 1927	ncRNA	0.404741656111448	1.31989777647632	0.245169022503787	0.237074408139019	0.225426131547331	0.25779021731425	1.26286173965007	0.446098601935751	-0.0767002099173615	0.967105430406157	1
Merged-chr19-6664604-2	chr19	6664504	6664704	+	890.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-121534.0	NM_009203	20521.0	Mm.391146	NM_009203	ENSMUSG00000061742	Slc22a12	AI987855|OAT4L|Rst|Slc22al2|URAT1	solute carrier family 22 (organic anion/cation transporter), member 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3500289-2	chr12	3500189	3500389	+	566.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_172421, exon 11 of 11)	exon (NM_172421, exon 11 of 11)	-72102.0	NM_001162465	13528.0	Mm.286202	NM_007886	ENSMUSG00000071454	Dtnb	-	dystrobrevin, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46849567-4	chr8	46849463	46849663	+	908.912476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	109818.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105702367-2	chr8	105702305	105702505	+	653.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001047435, intron 2 of 2)	intron (NM_001047435, intron 2 of 2)	758.0	NM_001286345	56513.0	Mm.472753	NM_019695	ENSMUSG00000005699	Pard6a	0710008C04Rik|2610010A15Rik|PAR-6A|PAR6alpha|Par-6|Par6|Par6c|TAX40|Tip-40	par-6 family cell polarity regulator alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-60703266-3	chr11	60703142	60703342	+	732.266663	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008502, intron 2 of 20)	intron (NM_008502, intron 2 of 20)	3552.0	NM_008502	16897.0	Mm.285453	NM_008502	ENSMUSG00000020536	Llgl1	AI325176|Lgl1|Llglh|Mgl1	LLGL1 scribble cell polarity complex component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-48274275-3	chr17	48274161	48274361	+	876.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033922, intron 5 of 5)	intron (NM_001033922, intron 5 of 5)	9966.0	NM_001163796	224840.0	Mm.131234	NM_172623	ENSMUSG00000051682	Treml4	5031403H21Rik|BB137214|IDCP1|TLT-4|TLT4|Treml3	triggering receptor expressed on myeloid cells-like 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-26292635-1	chr4	26292535	26292735	+	563.0	f1_balb.idr	Intergenic	Lx3C|LINE|L1	54017.0	NM_172865	242362.0	Mm.245602	NM_172865	ENSMUSG00000040520	Manea	4932703L02Rik	mannosidase, endo-alpha	protein-coding	-0.44647357591106	-0.429722537734714	-0.435158542137534	-0.0905808712164227	-0.445413865657436	-0.428503921433993	0.60870151277827	-0.438645835208696	2.10808804565975	0.420486022967894	1
Merged-chr4-53231209-4	chr4	53231109	53231309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14987.0	NR_040665	78180.0	Mm.243847	NR_040665	ENSMUSG00000086947	4930522O17Rik	-	RIKEN cDNA 4930522O17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-59175214-4	chr18	59175130	59175330	+	909.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081328)	promoter-TSS (NM_001081328)	-110.0	NM_001081328	78923.0	Mm.84007	NM_001081328	ENSMUSG00000058152	Chsy3	4833446K15Rik|AI662215	chondroitin sulfate synthase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-23034746-2	chr2	23034646	23034846	+	593.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077190, intron 1 of 10)	Lx9|LINE|L1	5495.0	NM_001077192	11308.0	Mm.205647	NM_007380	ENSMUSG00000058835	Abi1	E3B1|NAP1|Ssh3bp1|abi-1	abl-interactor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-64090283-2	chr15	64090183	64090383	+	627.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 28 of 28)	intron (NM_001276461, intron 28 of 28)	-29835.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	-2.18233058068552	-2.15536956715525	-2.16352280018114	-2.04193253143548	-2.18043796738662	-2.15360272754651	-2.16167708693786	-2.16902129354933	-0.683654500252594	0.846597994014493	1
Merged-chr3-90084080-4	chr3	90083987	90084187	+	949.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357581, intron 1 of 8)	intron (NM_001357581, intron 1 of 8)	4566.0	NM_001293749	59069.0	Mm.240839	NM_022314	ENSMUSG00000027940	Tpm3	TM30nm|TMnm|Tm5NM|Tpm-5|Tpm5|Trop-5|gamma-TM|hTM30nm|hTMnm	tropomyosin 3, gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-64358529-1	chr1	64358429	64358629	+	808.0	f0_balb.idr	Intergenic	Intergenic	-174275.0	NM_009952	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-112270406-1	chr10	112270306	112270506	+	544.0	f0_balb.idr	promoter-TSS (NM_001359752)	promoter-TSS (NM_001359752)	-715.0	NM_001359752	268345.0	Mm.336242	NM_001025581	ENSMUSG00000035681	Kcnc2	AW047325|B230117I07|KShIIIA|Kv3.2	potassium voltage gated channel, Shaw-related subfamily, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71611999-4	chr8	71611900	71612100	+	918.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146211, intron 1 of 11)	intron (NM_146211, intron 1 of 11)	976.0	NM_146211	234407.0	Mm.240885	NM_146211	ENSMUSG00000034807	Colgalt1	2810024B22Rik|Glt25d1	collagen beta(1-O)galactosyltransferase 1	protein-coding	1.68842559024531	1.06458946496429	1.43641633930305	1.97349046258251	1.48080331044444	1.30075556435178	2.05109134696222	1.67848251807088	0.225854884652783	0.84358034106526	0.998431161219273
Merged-chr5-3905685-4	chr5	3905569	3905769	+	888.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11736.0	NM_172135	545725.0	Mm.99593	NM_172135	ENSMUSG00000040429	Mterf1a	4931431L11Rik|9230106K09Rik|Mterf|Mterf1|mTERF1b	mitochondrial transcription termination factor 1a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-78176505-4	chr11	78176417	78176617	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080849, intron 1 of 14)	intron (NM_080849, intron 1 of 14)	149.0	NM_080849	140859.0	Mm.23788	NM_080849	ENSMUSG00000017405	Nek8	4632401F23Rik|b2b1449Clo|jck	NIMA (never in mitosis gene a)-related expressed kinase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-82739580-1	chr6	82739480	82739680	+	554.0	f1_c57bl6.idr	exon (NM_013820, exon 8 of 18)	exon (NM_013820, exon 8 of 18)	34874.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-85122131-4	chr16	85122006	85122206	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198825, intron 1 of 15)	MLT1F|LTR|ERVL-MaLR	51601.0	NM_001198825	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	3.34349265460178	4.68519407097439	3.86419075090666	4.11305748508629	4.17563358545224	4.33628531732809	2.89085394585198	2.45770986604586	-0.533681119939804	0.367782870771676	0.862661267523493
Merged-chr4-134729005-4	chr4	134728906	134729106	+	955.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-24716.0	NM_207237	230815.0	Mm.18905	NM_207237	ENSMUSG00000037306	Man1c1	AI593348	mannosidase, alpha, class 1C, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44498615-3	chr9	44498523	44498723	+	852.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030256)	promoter-TSS (NM_030256)	-513.0	NM_030256	80288.0	Mm.370270	NM_030256	ENSMUSG00000063382	Bcl9l	B9L|BC003321|BCL9-2|DLNB11	B cell CLL/lymphoma 9-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-139599928-1	chr4	139599828	139600028	+	643.0	f1_balb.idr	intron (NM_001205173, intron 1 of 8)	RSINE1|SINE|B4	-22966.0	NM_175438	212647.0	Mm.273571	NM_175438	ENSMUSG00000028737	Aldh4a1	A930035F14Rik|Ahd-1|Ahd1|Aldh4|Aldh5a1|E330022C09|P5cd|P5cdh|P5cdhl|P5cdhs|Ssdh1	aldehyde dehydrogenase 4 family, member A1	protein-coding	0.252775854959132	0.859142573429766	0.118111911279432	0.113268663048088	0.690968614228254	0.125783362006374	0.459954729440307	0.114115543842582	-0.0619572284591152	0.975565857861126	1
Merged-chr12-110485309-4	chr12	110485190	110485390	+	873.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_012023)	promoter-TSS (NM_012023)	-449.0	NM_001081457	26931.0	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-104032613-4	chr5	104032528	104032728	+	761.145813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10832.0	NM_053262	114664.0	Mm.46019	NM_053262	ENSMUSG00000029311	Hsd17b11	Dhrs8|Pan1b|SDR2|retSDR2	hydroxysteroid (17-beta) dehydrogenase 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-24470746-4	chr5	24470631	24470831	+	770.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359881, intron 1 of 15)	intron (NM_001359881, intron 1 of 15)	18554.0	NM_139153	213990.0	Mm.250703	NM_139153	ENSMUSG00000023353	Agap3	AGAP-3|AV028425|Centg3|Crag|Crag.|MRIP-1|cnt-g3	ArfGAP with GTPase domain, ankyrin repeat and PH domain 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-144589277-4	chr3	144589168	144589368	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053102, intron 2 of 4)	intron (NM_053102, intron 2 of 4)	18841.0	NM_053102	93684.0	Mm.29812	NM_053102	ENSMUSG00000037072	Selenof	9430015P09Rik|Sep15	selenoprotein F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89394884-6	chr3	89394779	89394979	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040404, intron 1 of 1)	intron (NR_040404, intron 1 of 1)	589.0	NR_040404	545539.0	Mm.393389	NR_040403	ENSMUSG00000074466	Gm15417	-	predicted gene 15417	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-20107879-4	chr11	20107780	20107980	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146243, intron 1 of 8)	intron (NM_146243, intron 1 of 8)	5071.0	NM_146243	66713.0	Mm.259045	NM_146243	ENSMUSG00000020152	Actr2	4921510D23Rik|AA409782|Arp2|D6Ertd746e	ARP2 actin-related protein 2	protein-coding	2.53232307018721	3.05857645389564	3.52904510350503	2.8711539005689	2.44523927654822	2.46739954658521	3.06825556042469	1.47617451612004	-1.0551852987209	0.178028835048499	0.648362827425708
Merged-chr11-59549493-3	chr11	59549472	59549672	+	892.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_145827, exon 4 of 10)	exon (NM_145827, exon 4 of 10)	6886.0	NR_153314	216799.0	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-72162798-4	chr8	72162709	72162909	+	999.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023126, intron 1 of 7)	intron (NM_023126, intron 1 of 7)	1609.0	NM_023126	17274.0	Mm.162811	NM_023126	ENSMUSG00000003037	Rab8a	AA409338|Mel	RAB8A, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-111001897-2	chr4	111001797	111001997	+	654.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001284190, intron 4 of 12)	intron (NM_001284190, intron 4 of 12)	-413109.0	NR_033793	67621.0	Mm.45533	NM_026279	ENSMUSG00000028545	Bend5	2310026E23Rik	BEN domain containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-86749134-2	chr11	86749034	86749234	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001003908, intron 1 of 31)	PB1D10|SINE|Alu	8433.0	NM_001003908	67300.0	Mm.254588	NM_001003908	ENSMUSG00000047126	Cltc	3110065L21Rik|CHC|R74732	clathrin, heavy polypeptide (Hc)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-30676032-4	chr16	30675926	30676126	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	76303.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106673118-5	chr11	106673015	106673215	+	841.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305158, intron 12 of 14)	intron (NM_001305158, intron 12 of 14)	42166.0	NM_001305158	18613.0	Mm.343951	NM_008816	ENSMUSG00000020717	Pecam1	C85791|Cd31|PECAM-1|Pecam	platelet/endothelial cell adhesion molecule 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-17899337-2	chr5	17899237	17899437	+	627.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10378.0	NM_001159558	12491.0	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 molecule	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-82798067-2	chr6	82797967	82798167	+	862.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23613.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-52281793-2	chr14	52281693	52281893	+	924.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023434, intron 3 of 9)	intron (NM_023434, intron 3 of 9)	-2398.0	NM_172601	76338.0	Mm.32870	NM_172601	ENSMUSG00000022159	Rab2b	1500012D09Rik|4930528G15Rik|A230002G14|D530043M21Rik	RAB2B, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-121353369-2	chr11	121353269	121353469	+	988.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025793, intron 1 of 9)	intron (NM_025793, intron 1 of 9)	1078.0	NM_025793	66840.0	Mm.103986	NM_025793	ENSMUSG00000025173	Wdr45b	0610008N23Rik|AA408735|D16Bwg0193e|WIPI-3|Wdr45l	WD repeat domain 45B	protein-coding	0.0989701114815687	-0.316475202108693	-0.319929401386734	-0.0485999299024165	-0.326290844948279	-0.315692975649374	-0.156384206539568	-0.044477733296785	-0.769612098131778	0.745432837888565	1
Merged-chr14-14800551-4	chr14	14800452	14800652	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001360516)	TTS (NM_001360516)	-20263.0	NM_001195229	674895.0	Mm.317563	NM_001034865	ENSMUSG00000042567	Nek10	Gm282	NIMA (never in mitosis gene a)- related kinase 10	protein-coding	3.73034703474623	4.34003610394032	3.50418730804275	3.20373631135836	3.76060478921825	4.31349705440123	4.28865877466627	3.81534073753134	0.430066433454585	0.378385248945577	0.871397690824179
Merged-chr10-122779871-2	chr10	122779778	122779978	+	910.2999880000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110218, intron 1 of 9)	intron (NM_001110218, intron 1 of 9)	100563.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-137899524-4	chr1	137899498	137899698	+	793.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66857.0	NR_029795	735252.0		NR_029795	ENSMUSG00000065565	Mir181a-1	Mirn181a-1|Mirn213|miR-213|mir-181a-1|mmu-mir-213	microRNA 181a-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-63339070-4	chr10	63338957	63339157	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019812)	promoter-TSS (NM_019812)	-22.0	NM_001159589	93759.0	Mm.351459	NM_019812	ENSMUSG00000020063	Sirt1	AA673258|SIR2L1|Sir2|Sir2a|Sir2alpha	sirtuin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115403866-4	chr11	115403752	115403952	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361463)	promoter-TSS (NM_001361463)	100.0	NR_154991	68572.0	Mm.271062	NM_026729	ENSMUSG00000018858	Mrpl58	1110001A02Rik|1110002E03Rik|Ict1|MRP-L58	mitochondrial ribosomal protein L58	protein-coding	-1.17367364971587	-1.14665061133654	-1.15856004380685	-1.16834280623128	-1.17310571790619	-1.14406978763884	-0.42938571406771	-1.16659169643457	2.89727187181404	0.396361616615464	1
Merged-chr1-136107999-2	chr1	136107899	136108099	+	557.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081023, intron 33 of 43)	intron (NM_001081023, intron 33 of 43)	23184.0	NR_046170	329253.0	Mm.487858	NR_046167	ENSMUSG00000086264	Gm15850	6530439I21	predicted gene 15850	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-54933737-1	chr1	54933637	54933837	+	693.666687	f0_balb.idr	Intergenic	Intergenic	-7350.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-47534448-1	chr14	47534348	47534548	+	713.0	f1_balb.idr	Intergenic	Intergenic	33986.0	NM_172599	100504663.0	Mm.287279	NM_172599	ENSMUSG00000037526	Atg14	4832427M01|Atg14L|D14Ertd114e|D14Ertd436e	autophagy related 14	protein-coding	1.45757723266975	2.32649296963681	3.63794977418739	2.16413781350838	1.19869061655808	3.55716064237649	3.30684787958827	2.0036366061006	0.301158982047191	0.754460824411032	0.998431161219273
Merged-chr14-40936604-4	chr14	40936505	40936705	+	903.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145928, intron 1 of 8)	intron (NM_145928, intron 1 of 8)	11604.0	NM_001316748	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-123261703-3	chr6	123261601	123261801	+	661.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010819)	promoter-TSS (NM_010819)	-406.0	NM_001163161	17474.0	Mm.441101	NM_010819	ENSMUSG00000030144	Clec4d	Clecsf8|Mpcl|mcl	C-type lectin domain family 4, member d	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-54575768-2	chr13	54575668	54575868	+	721.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_019968, exon 2 of 4)	exon (NM_019968, exon 2 of 4)	755.0	NM_019968	56795.0	Mm.89484	NM_019968	ENSMUSG00000025870	Arl10	Arl10a|Arm1	ADP-ribosylation factor-like 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-47173683-2	chr6	47173583	47173783	+	575.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001004357, intron 20 of 23)	intron (NM_001004357, intron 20 of 23)	-70713.0	NM_025771	66797.0	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-93047066-2	chr2	93046966	93047166	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177536)	promoter-TSS (NM_001177536)	-922.0	NM_001177536	100042784.0	Mm.102816	NM_001177536	ENSMUSG00000075028	Prdm11	8030443D09Rik|AA163972|Gm707	PR domain containing 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-102283093-3	chr15	102283007	102283207	+	908.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3651.0	NM_134100	106073.0	Mm.287740	NM_134100	ENSMUSG00000045665	Mfsd5	AA409375|AW556797|D15Mgi27	major facilitator superfamily domain containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-77028256-2	chr11	77028156	77028356	+	905.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010484, intron 13 of 13)	intron (NM_010484, intron 13 of 13)	29659.0	NM_010484	15567.0	Mm.300318	NM_010484	ENSMUSG00000020838	Slc6a4	5-HTT|AI323329|Htt|Sert	solute carrier family 6 (neurotransmitter transporter, serotonin), member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-124610440-4	chr2	124610320	124610520	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_172537, exon 1 of 17)	5' UTR (NM_172537, exon 1 of 17)	124.0	NM_172537	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-56507723-2	chr18	56507623	56507823	+	862.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	-30416.0	NR_106160	102465790.0		NR_106160	ENSMUSG00000099196	Mir1258	Gm27371|mmu-mir-1258	microRNA 1258	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-16969865-4	chr11	16969729	16969929	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	18419.0	NM_176982	319701.0	Mm.120672	NM_176982	ENSMUSG00000044966	Fbxo48	A630050E13Rik	F-box protein 48	protein-coding	5.62844244523842	5.12821289691409	4.27317723685623	4.32697104437522	4.51336474510339	4.51070351250231	3.87002282142595	4.76230141490986	-0.632360813691342	0.13325648489225	0.570764692507331
Merged-chr10-42841799-3	chr10	42841700	42841900	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18712.0	NM_172938	268297.0	Mm.98731	NM_172938	ENSMUSG00000044770	Scml4	9330161D17|mFLJ00197	Scm polycomb group protein like 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-25985774-4	chr17	25985684	25985884	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347334)	promoter-TSS (NM_001347334)	12.0	NR_151779	50817.0	Mm.216072	NM_015830	ENSMUSG00000037326	Capn15	Solh	calpain 15	protein-coding	5.46227749221428	5.34678311554083	5.6743842480387	5.220848543233	5.86617491311037	4.93423355616138	4.46015625610706	5.01277235901864	-0.293721341133691	0.387441875519381	0.877080683487082
Merged-chr19-37693038-2	chr19	37692938	37693138	+	964.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001105201, exon 6 of 6)	exon (NM_001105201, exon 6 of 6)	-4770.0	NM_007811	13082.0	Mm.42230	NM_007811	ENSMUSG00000024987	Cyp26a1	Cyp26|P450RA|P450RAI|RAH	cytochrome P450, family 26, subfamily a, polypeptide 1	protein-coding	1.05953407179971	0.243326413807137	0.235665157170955	0.904969564275333	0.221246925918445	0.245045863258198	0.237359673743594	0.810238673204875	-1.51455447348684	0.460125847787058	1
Merged-chr9-113705435-2	chr9	113705335	113705535	+	613.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164678, intron 1 of 17)	intron (NM_001164678, intron 1 of 17)	2824.0	NM_001164678	18571.0	Mm.29816	NM_011052	ENSMUSG00000032504	Pdcd6ip	AI480591|AW544830|Aip1|Alix|C76364|Eig2|mKIAA1375	programmed cell death 6 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19085725-4	chr7	19085624	19085824	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_032418, intron 1 of 14)	intron (NM_032418, intron 1 of 14)	-1104.0	NR_037282	100526504.0		NR_037282	ENSMUSG00000092659	Mir3100	mir-3100|mmu-mir-3100	microRNA 3100	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-65958852-2	chr5	65958752	65958952	+	737.416687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8272.0	NM_001081104	231252.0	Mm.140015	NM_001081104	ENSMUSG00000029205	Chrna9	2410015I05Rik|Acra9|EG666827|Gm8311	cholinergic receptor, nicotinic, alpha polypeptide 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-88767888-2	chr5	88767788	88767988	+	842.0714109999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_007832, intron 1 of 6)	intron (NM_007832, intron 1 of 6)	2875.0	NM_007832	13178.0	Mm.298892	NM_007832	ENSMUSG00000029366	Dck	-	deoxycytidine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88244898-2	chr3	88244798	88244998	+	682.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021375, intron 7 of 9)	intron (NM_021375, intron 7 of 9)	9786.0	NM_021375	58176.0	Mm.103777	NM_021375	ENSMUSG00000104445	Rhbg	-	Rhesus blood group-associated B glycoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-27233735-2	chr7	27233635	27233835	+	856.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_133770, exon 3 of 15)	exon (NM_133770, exon 3 of 15)	722.0	NM_133770	76889.0	Mm.124728	NM_133770	ENSMUSG00000003762	Coq8b	0610012P18Rik|Adck4	coenzyme Q8B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-11978885-2	chr11	11978785	11978985	+	694.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177629, intron 2 of 15)	intron (NM_001177629, intron 2 of 15)	49086.0	NM_001177629	14783.0	Mm.273117	NM_010345	ENSMUSG00000020176	Grb10	5730571D09Rik|AI325020|Meg1|mKIAA0207	growth factor receptor bound protein 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-155534273-3	chr2	155534170	155534370	+	889.605591	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019811, intron 2 of 17)	intron (NM_019811, intron 2 of 17)	16227.0	NM_019811	60525.0	Mm.255026	NM_019811	ENSMUSG00000027605	Acss2	1110017C11Rik|ACAS|Acas1|Acas2|AceCS1|Acs1	acyl-CoA synthetase short-chain family member 2	protein-coding	0.826572788737053	0.956687125496971	0.917078121919774	0.88465514242797	1.53518151414267	2.96600772453936	3.11759028517795	2.82724415963618	6.10903735285814	2.85125850776899e-06	0.000158376849889872
Merged-chr6-131269757-4	chr6	131269654	131269854	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22392.0	NM_008462	16633.0	Mm.4783	NM_008462	ENSMUSG00000030187	Klra2	Klra30|Ly49b	killer cell lectin-like receptor, subfamily A, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-78819499-2	chr8	78819399	78819599	+	696.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030145, intron 1 of 3)	MER2|DNA|TcMar-Tigger	1653.0	NM_001191004	78651.0	Mm.28694	NM_030145	ENSMUSG00000031683	Lsm6	1500031N17Rik|2410088K19Rik|AI747288	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131137790-2	chr1	131137690	131137890	+	775.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145508, intron 1 of 2)	CpG	444.0	NM_145508	226419.0	Mm.39299	NM_145508	ENSMUSG00000016526	Dyrk3	BC006704	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53149901-4	chr4	53149802	53150002	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 1 of 49)	intron (NM_013454, intron 1 of 49)	9993.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171280540-2	chr1	171280440	171280640	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008911, intron 2 of 12)	intron (NM_008911, intron 2 of 12)	646.0	NM_008911	19044.0	Mm.266888	NM_008911	ENSMUSG00000062729	Ppox	Ppo	protoporphyrinogen oxidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-109280247-4	chr4	109280156	109280356	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007943)	promoter-TSS (NM_007943)	-19.0	NM_007943	13858.0	Mm.318250	NM_007943	ENSMUSG00000028552	Eps15	2410112D09Rik	epidermal growth factor receptor pathway substrate 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-50182650-4	chr17	50182541	50182741	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181397, intron 1 of 9)	intron (NM_181397, intron 1 of 9)	7856.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-18989036-4	chr2	18988938	18989138	+	981.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008845, intron 1 of 9)	intron (NM_008845, intron 1 of 9)	9083.0	NM_008845	18718.0	Mm.313977	NM_008845	ENSMUSG00000026737	Pip4k2a	AW742916|Pip5k2a	phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-29533774-2	chr6	29533674	29533874	+	894.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252382, intron 2 of 8)	intron (NM_001252382, intron 2 of 8)	4492.0	NM_001252382	27056.0	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-73107537-2	chr11	73107434	73107634	+	981.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361245, intron 2 of 30)	B2_Mm2|SINE|B2	16939.0	NM_172944	16407.0	Mm.96	NM_008399	ENSMUSG00000005947	Itgae	A530055J10|CD103|aM290|alpha-E1|alpha-M290	integrin alpha E, epithelial-associated	protein-coding	1.30368618836851	0.444911129217431	0.431892420998407	1.78333795046883	1.1329077252416	0.447804240677221	0.434790299640759	0.423438399367741	-1.99121710948001	0.269697359314556	0.772959591673376
Merged-chr9-90054426-4	chr9	90054317	90054517	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_007801, exon 1 of 12)	5' UTR (NM_007801, exon 1 of 12)	150.0	NM_001312649	13036.0	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	4.93512325316195	5.38831801958575	5.44187496433849	5.493210686038	4.45499840314307	4.58949647217036	5.16620112935608	5.22046394377181	-0.505907017183916	0.121739950643515	0.547245267450283
Merged-chr11-106475481-1	chr11	106475381	106475581	+	556.0	f0_balb.idr	intron (NM_023913, intron 1 of 21)	intron (NM_023913, intron 1 of 21)	12315.0	NM_023913	78943.0	Mm.340943	NM_023913	ENSMUSG00000020715	Ern1	9030414B18Rik|AI225830|C85377|Ire1a|Ire1alpha|Ire1p	endoplasmic reticulum (ER) to nucleus signalling 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122711893-2	chr8	122711786	122711986	+	607.583374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12777.0	NM_009824	12398.0	Mm.194339	NM_009824	ENSMUSG00000006362	Cbfa2t3	A630044F12Rik|AI465270|AW229127|Cbfa2t3h|ETO-2|Eto2|MTGR2	core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human)	protein-coding	0.805248998898041	1.18674645266645	1.12756507335136	0.415187874987912	0.697411131744628	0.432044735520311	0.615781377632897	0.416333099627109	-2.25698475969368	0.192079231533317	1
Merged-chr1-171411328-4	chr1	171411235	171411435	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001305677)	promoter-TSS (NM_001305677)	22.0	NM_001305676	22278.0	Mm.8	NM_009480	ENSMUSG00000026641	Usf1	bHLHb11	upstream transcription factor 1	protein-coding	4.67145343860845	4.93645128412061	4.28088386339586	4.22227137521935	5.04128531702956	5.23680603624973	4.04019006759954	4.84441594075837	0.373843663654998	0.335450737341214	0.83593283300053
Merged-chr11-120367699-2	chr11	120367599	120367799	+	578.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_172802, exon 4 of 5)	exon (NM_172802, exon 4 of 5)	6165.0	NM_172802	238021.0	Mm.481403	NM_172802	ENSMUSG00000025380	Fscn2	A930022G03|Ahl8|C630046B20Rik	fascin actin-bundling protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-150748474-2	chr2	150748374	150748574	+	644.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172117)	promoter-TSS (NM_172117)	-607.0	NM_001355068	12497.0	Mm.275524	NM_172117	ENSMUSG00000033068	Entpd6	2700026H11Rik|Cd39l2|NTPDase-6	ectonucleoside triphosphate diphosphohydrolase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-72607809-4	chr11	72607716	72607916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025985, intron 1 of 5)	CpG	555.0	NM_025985	67128.0	Mm.458052	NM_025985	ENSMUSG00000020794	Ube2g1	2700059C12Rik|AI256795|AU014992|AW552068|D130023C12Rik	ubiquitin-conjugating enzyme E2G 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124415128-4	chr6	124415050	124415250	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001277330)	promoter-TSS (NM_001277330)	-83.0	NM_175933	19305.0	Mm.22418	NM_008995	ENSMUSG00000005069	Pex5	AW212715|ESTM1|PTS1-BP|PTS1R|PXR1P|Pxr1|X83306	peroxisomal biogenesis factor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167683038-2	chr2	167682938	167683138	+	564.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-5877.0	NM_009883	12608.0	Mm.439656	NM_009883	ENSMUSG00000056501	Cebpb	C/EBPbeta|CRP2|IL-6DBP|LAP|LIP|NF-IL6|NF-M|Nfil6	CCAAT/enhancer binding protein (C/EBP), beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-153709477-2	chr3	153709377	153709577	+	562.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011372, intron 1 of 4)	RMER1A|Other|Other	15656.0	NM_011372	20447.0	Mm.296453	NM_011372	ENSMUSG00000052544	St6galnac3	Siat7c	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-122891672-2	chr10	122891572	122891772	+	865.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110218, intron 6 of 9)	intron (NM_001110218, intron 6 of 9)	94052.0	NR_029527	387251.0		NR_029527	ENSMUSG00000065406	Mirlet7i	Mirnlet7i|let-7i|mmu-let-7i	microRNA let7i	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-51071539-4	chr13	51071449	51071649	+	965.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29178.0	NR_029463	77428.0	Mm.405630	NR_029463		9430083A17Rik	-	RIKEN cDNA 9430083A17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-55611059-2	chr2	55610959	55611159	+	664.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	175089.0	NM_008426	16519.0	Mm.5127	NM_008426	ENSMUSG00000026824	Kcnj3	GIRK-1|GIRK1|Kcnf3|Kir3.1	potassium inwardly-rectifying channel, subfamily J, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-67846483-4	chr5	67846341	67846541	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038999, intron 1 of 36)	intron (NM_001038999, intron 1 of 36)	990.0	NM_009727	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-99326259-3	chr12	99326155	99326355	+	786.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183186, intron 3 of 5)	intron (NM_183186, intron 3 of 5)	123819.0	NM_183186	71375.0	Mm.341972	NM_183186	ENSMUSG00000033713	Foxn3	5430426H20Rik|AA589593|AW556347|Ches1|Ches1l|HTLFL1	forkhead box N3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-134110152-2	chr1	134110052	134110252	+	716.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-1090.0	NM_001284525	71884.0	Mm.328268	NM_027979	ENSMUSG00000026450	Chit1	2300002L19Rik	chitinase 1 (chitotriosidase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123750813-2	chr5	123750713	123750913	+	583.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001042421, intron 1 of 63)	intron (NM_001042421, intron 1 of 63)	1087.0	NM_001042421	208628.0	Mm.441089	NM_001042421	ENSMUSG00000029414	Kntc1	D330012D13|jgl	kinetochore associated 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-72863658-3	chr5	72863567	72863767	+	611.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013689, intron 1 of 17)	intron (NM_013689, intron 1 of 17)	4781.0	NM_001113461	21682.0	Mm.319581	NM_013689	ENSMUSG00000029217	Tec	-	tec protein tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35270078-2	chr17	35269978	35270178	+	799.450012	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER21A|LTR|ERV1	6955.0	NM_001267808	14980.0	Mm.439675	NM_001267808		H2-L	H-2L	histocompatibility 2, D region locus L	protein-coding	1.91151950031244	1.86079840022567	0.902484332574232	1.11662200233125	0.859965743867012	2.37621546317881	1.67531591583117	1.1220182118656	0.375042639370515	0.770544775032252	0.998431161219273
Merged-chr11-94070567-4	chr11	94070467	94070667	+	824.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025428, intron 4 of 26)	MLTR14|LTR|ERV1	26362.0	NM_001025429	70834.0	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-138844585-2	chr7	138844485	138844685	+	585.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001045483, intron 1 of 1)	intron (NM_001045483, intron 1 of 1)	1682.0	NM_001045483	69546.0	Mm.31598	NM_027115	ENSMUSG00000041775	Mapk1ip1	2310009E07Rik|AU043776|MISS	mitogen-activated protein kinase 1 interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115060022-4	chr11	115059919	115060119	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172050, intron 1 of 3)	intron (NM_172050, intron 1 of 3)	2020.0	NM_172050	217306.0	Mm.222667	NM_172050	ENSMUSG00000048498	Cd300e	BC034097|CLM2|Cd300le|TREM5	CD300E molecule	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36948124-4	chr1	36948014	36948214	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-8587.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-37440557-2	chr6	37440457	37440657	+	547.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178661, intron 1 of 11)	intron (NM_178661, intron 1 of 11)	1591.0	NM_178661	208647.0	Mm.169929	NM_178661	ENSMUSG00000038648	Creb3l2	BBF2H7|C530025K05Rik|SCIRR69	cAMP responsive element binding protein 3-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-114567277-4	chr5	114567176	114567376	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001004180)	promoter-TSS (NM_001004180)	-975.0	NM_001004180	433940.0	Mm.194212	NM_001004180	ENSMUSG00000041930	Fam222a	-	family with sequence similarity 222, member A	protein-coding	5.04794954657603	4.90354184990717	5.08546706789484	4.41586229822355	5.90502298625243	5.42032459667065	5.22904445263427	6.22444545137244	1.00252944347353	0.0018223393340164	0.0312051769688803
Merged-chr4-46277452-3	chr4	46277348	46277548	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66746.0	NM_183298	110805.0	Mm.354634	NM_183298	ENSMUSG00000070990	Foxe1	Titf2	forkhead box E1	protein-coding	1.02714737242319	1.21566933972052	1.15903165053812	1.11220965410891	3.73634988304654	3.61975582107166	3.0519694834585	3.65714655043332	6.73024918285754	8.64318524493025e-09	1.0727683093311e-06
Merged-chr7-18925354-4	chr7	18925254	18925454	+	804.954163	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001029877)	promoter-TSS (NM_001029877)	-534.0	NM_001029877	384569.0	Mm.262724	NM_001029877	ENSMUSG00000030411	Nova2	Gm1424	neuro-oncological ventral antigen 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-7212771-4	chr10	7212674	7212874	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172546)	promoter-TSS (NM_172546)	-537.0	NM_172546	215748.0	Mm.37984	NM_172546	ENSMUSG00000015202	Cnksr3	6820402C05|BC024086|Magi1	Cnksr family member 3	protein-coding	5.72486512002679	5.46827247719405	6.37003805968043	5.85366837578842	6.21227946567161	6.17243534287772	6.57167058329283	5.83601441769054	0.358075062235211	0.167916475346246	0.633940173443756
Merged-chr16-91737067-4	chr16	91737008	91737208	+	924.3916630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110276, intron 1 of 15)	intron (NM_001110276, intron 1 of 15)	7737.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126285453-3	chr7	126285338	126285538	+	881.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145587, intron 1 of 3)	intron (NM_145587, intron 1 of 3)	12942.0	NM_145587	104175.0	Mm.29660	NM_145587	ENSMUSG00000042978	Sbk1	Sbk	SH3-binding kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-73535610-2	chr7	73535510	73535710	+	864.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081345, intron 2 of 38)	intron (NM_001081345, intron 2 of 38)	6136.0	NM_001081345	244059.0	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-108570837-2	chr9	108570737	108570937	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026378, intron 3 of 11)	intron (NM_026378, intron 3 of 11)	945.0	NM_026378	67789.0	Mm.458081	NM_026378	ENSMUSG00000019039	Dalrd3	6330580J24Rik|C77829|mir-425	DALR anticodon binding domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-34802354-3	chr1	34802293	34802493	+	762.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183019, intron 1 of 9)	intron (NM_183019, intron 1 of 9)	671.0	NM_183019	226970.0	Mm.41604	NM_183019	ENSMUSG00000037509	Arhgef4	9330140K16Rik|Asef	Rho guanine nucleotide exchange factor (GEF) 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-57701319-2	chr6	57701219	57701419	+	921.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	-1136.0	NM_133737	71835.0	Mm.274904	NM_133737	ENSMUSG00000062190	Lancl2	1700003F10Rik	LanC (bacterial lantibiotic synthetase component C)-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-31531103-4	chr15	31531005	31531205	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172606)	promoter-TSS (NM_172606)	-68.0	NM_172606	223455.0	Mm.272185	NM_172606	ENSMUSG00000039100	March6	3830408G03|F830029L24Rik|mKIAA0597	membrane-associated ring finger (C3HC4) 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-121446432-4	chr7	121446319	121446519	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081327, intron 1 of 1)	intron (NM_001081327, intron 1 of 1)	54123.0	NM_001081327	195646.0	Mm.247449	NM_177575	ENSMUSG00000046321	Hs3st2	6430516N12Rik|A830061E14Rik|AW491345	heparan sulfate (glucosamine) 3-O-sulfotransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-9905395-2	chr1	9905295	9905495	+	592.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3243.0	NM_177722	240697.0	Mm.259800	NM_177722	ENSMUSG00000046101	Mcmdc2	6030422M02Rik	minichromosome maintenance domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-56600939-4	chr19	56600840	56601040	+	995.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52679.0	NM_025811	66866.0	Mm.46346	NM_025811	ENSMUSG00000025078	Nhlrc2	1200003G01Rik|AI835049|AV002846|AW496455	NHL repeat containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-146386408-1	chr2	146386308	146386508	+	749.0	f0_balb.idr	intron (NM_001033348, intron 24 of 40)	intron (NM_001033348, intron 24 of 40)	125596.0	NM_001033348	241694.0	Mm.222310	NM_001033348	ENSMUSG00000037110	Ralgapa2	A230067G21Rik|AS250|BC053994|RGC2|pp250	Ral GTPase activating protein, alpha subunit 2 (catalytic)	protein-coding	-0.338494750452776	-0.325451598934868	-0.329729028200182	0.292836991238049	-0.192031046212991	0.174384278718145	-0.328785972719294	-0.332450471901238	-0.114557819181247	0.963207387307312	1
Merged-chr19-20797939-3	chr19	20797918	20798118	+	616.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028953, intron 17 of 20)	intron (NM_028953, intron 17 of 20)	-70462.0	NM_011921	26358.0	Mm.14609	NM_011921	ENSMUSG00000024747	Aldh1a7	AI987940|Ahd2-like|Aldh-pb|Aldh1a4|Aldhpb	aldehyde dehydrogenase family 1, subfamily A7	protein-coding	-0.385350606621458	-0.369804007814089	0.531202108529421	0.0829839209169472	-0.384372476806798	-0.368665993180001	-0.373749512176561	-0.37810822335076	-3.7778038374137	0.137620729616682	1
Merged-chr5-135463581-4	chr5	135463504	135463704	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146001, intron 1 of 30)	intron (NM_146001, intron 1 of 30)	-69058.0	NM_148932	107939.0	Mm.28399	NM_148932	ENSMUSG00000053293	Pom121	2610027A18Rik|C80273|mKIAA0618	nuclear pore membrane protein 121	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-71041514-4	chr2	71041416	71041616	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145524, intron 1 of 9)	L1MC3|LINE|L1	14090.0	NM_145524	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-93475203-4	chr2	93475110	93475310	+	975.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12260.0	NM_001136055	12521.0	Mm.4261	NM_007656	ENSMUSG00000027215	Cd82	AA682076|AL023070|C33|IA4|Kai1|Tspan27	CD82 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-12037855-2	chr10	12037755	12037955	+	560.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	428631.0	NM_013898	30058.0	Mm.214504	NM_013898	ENSMUSG00000048007	Timm8a1	DXHXS1274E|Ddp1|Fci-12|Tim8a|Timm8a	translocase of inner mitochondrial membrane 8A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165997776-4	chr2	165997671	165997871	+	824.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008679, intron 1 of 22)	B1_Mur1|SINE|Alu	5134.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-28870798-3	chr13	28870656	28870856	+	844.2666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045054, intron 2 of 7)	intron (NR_045054, intron 2 of 7)	14666.0	NR_045054	72518.0	Mm.37454	NR_045053		2610307P16Rik	AI666457	RIKEN cDNA 2610307P16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-52764697-1	chr1	52764597	52764797	+	863.0	f0_balb.idr	Intergenic	Intergenic	-37339.0	NM_001357464	98682.0	Mm.491173	NM_133829	ENSMUSG00000041439	Mfsd6	2210010L05Rik|9630025I22Rik|AI836200|AW212394|MMR2	major facilitator superfamily domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-8738938-3	chr3	8738872	8739072	+	912.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-71934.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-12371458-4	chr17	12371337	12371537	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7172.0	NM_008877	18815.0	Mm.971	NM_008877	ENSMUSG00000059481	Plg	AI649309|Pg	plasminogen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-57836279-3	chr10	57836189	57836389	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	41745.0	NM_020561	57319.0	Mm.2379	NM_020561	ENSMUSG00000019872	Smpdl3a	0610010C24Rik|AI529588|ASM3A|ASML3|ASML3A	sphingomyelin phosphodiesterase, acid-like 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45444158-1	chr7	45444058	45444258	+	546.0	f1_balb.idr	intron (NM_030678, intron 8 of 15)	intron (NM_030678, intron 8 of 15)	9319.0	NM_030678	14936.0	Mm.275654	NM_030678	ENSMUSG00000003865	Gys1	Gys3|MGS	glycogen synthase 1, muscle	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-102311662-4	chr15	102311558	102311758	+	963.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356312, intron 13 of 30)	PB1D10|SINE|Alu	-14458.0	NM_027044	56612.0	Mm.158264	NM_020031	ENSMUSG00000001289	Pfdn5	1190001O17Rik|1700010A06Rik|D15Ertd697e|Eig1|MM-1	prefoldin 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-127258872-4	chr6	127258765	127258965	+	990.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49102.0	NR_073373	232386.0	Mm.257367	NR_073373	ENSMUSG00000107153	Gm38404	D130058E03	predicted gene, 38404	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-53845509-4	chr1	53845401	53845601	+	998.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001883, intron 21 of 28)	intron (NM_001001883, intron 21 of 28)	-3923.0	NR_106149	102465783.0		NR_106149	ENSMUSG00000098443	Mir7681	Gm27806|mmu-mir-7681	microRNA 7681	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-12499752-4	chr4	12499636	12499836	+	988.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-327721.0	NM_026558	68099.0	Mm.25340	NM_026558	ENSMUSG00000028218	Fam92a	6720467C03Rik|Fam92a1	family with sequence similarity 92, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-14912184-3	chr3	14912091	14912291	+	855.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25903.0	NM_009801	12349.0	Mm.1186	NM_009801	ENSMUSG00000027562	Car2	AI131712|CAII|Ca2|Car-2|Ltw-5|Lvtw-5	carbonic anhydrase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-17666054-2	chr12	17665954	17666154	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24755.0	NM_001361645	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	1.50340371471581	0.910015889313893	2.46762990316978	1.10384376846483	1.38626470738845	0.914809716438194	2.11025936583295	1.30198339158684	-0.445761982891785	0.724877895317311	0.998431161219273
Merged-chr11-115814871-4	chr11	115814765	115814965	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029557, intron 1 of 10)	CpG	126.0	NM_029557	76265.0	Mm.275438	NM_029557	ENSMUSG00000020781	Tsen54	0610034P02Rik	tRNA splicing endonuclease subunit 54	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-13300765-1	chr10	13300665	13300865	+	1000.0	f1_c57bl6.idr	intron (NM_001195065, intron 1 of 12)	intron (NM_001195065, intron 1 of 12)	23524.0	NM_001195096	215789.0	Mm.283359	NM_001033257	ENSMUSG00000062866	Phactr2	AV158170|BC012871	phosphatase and actin regulator 2	protein-coding	2.16461233395088	0.942417532403631	0.919847721013881	1.86907905942388	2.18506302801247	0.947396365490082	0.924895730378891	2.15905932886081	0.289443536839863	0.835773061186591	0.998431161219273
Merged-chr13-54301883-4	chr13	54301780	54301980	+	708.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69469.0	NM_009946	12890.0	Mm.268902	NM_009946	ENSMUSG00000025867	Cplx2	921-L|AI413745|AW492120|Gm34843	complexin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-32176103-3	chr19	32175984	32176184	+	855.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 5 of 9)	MLT1C|LTR|ERVL-MaLR	34929.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71331500-2	chr8	71331400	71331600	+	686.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001142322, intron 11 of 39)	B1_Mus1|SINE|Alu	-35348.0	NM_001145780	67023.0	Mm.41890	NM_025917	ENSMUSG00000002395	Use1	2010315L10Rik|5730403H22Rik|AV002165|D12|Ed2|Q-snare|p31	unconventional SNARE in the ER 1 homolog (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36736044-2	chr18	36735994	36736194	+	856.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_028036, intron 2 of 11)	PB1D10|SINE|Alu	1024.0	NM_028036	71983.0	Mm.135188	NM_028036	ENSMUSG00000006850	Tmco6	2410015B03Rik	transmembrane and coiled-coil domains 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-84354559-4	chr11	84354460	84354660	+	843.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133360, intron 43 of 53)	intron (NM_133360, intron 43 of 53)	158941.0	NM_019816	56321.0	Mm.257482	NM_019816	ENSMUSG00000018697	Aatf	4933415H02Rik|5830465M17Rik|Che-1|Trb	apoptosis antagonizing transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-38741208-2	chr9	38741108	38741308	+	581.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_172767, exon 19 of 20)	exon (NM_172767, exon 19 of 20)	-11588.0	NM_146787	258783.0	Mm.131149	NM_146787	ENSMUSG00000061039	Olfr920	MOR165-6	olfactory receptor 920	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-142901589-4	chr5	142901457	142901657	+	750.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5197.0	NM_007393	11461.0	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-19548218-4	chr10	19548119	19548319	+	992.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-43730.0	NM_010511	15979.0	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-36253225-2	chr8	36253106	36253306	+	885.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3690.0	NM_001081150	244421.0	Mm.324032	NM_001081150	ENSMUSG00000039633	Lonrf1	-	LON peptidase N-terminal domain and ring finger 1	protein-coding	0.876463659260399	0.876582529106537	0.486203231309558	0.479026943093099	1.39434852885872	0.49749871605983	1.1091431795785	0.662048025895542	1.42228239480918	0.390967044757367	1
Merged-chr5-130613773-1	chr5	130613673	130613873	+	592.0	f0_c57.idr	intron (NM_021371, intron 2 of 5)	MTD|LTR|ERVL-MaLR	164981.0	NM_021371	140904.0	Mm.40875	NM_021371	ENSMUSG00000060371	Caln1	9630012C17Rik|Cabp8|MNCb-0849	calneuron 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-73324512-4	chr8	73324401	73324601	+	900.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010687, intron 1 of 14)	intron (NM_010687, intron 1 of 14)	29039.0	NM_001317391	16795.0	Mm.324371	NM_010687	ENSMUSG00000004383	Large1	BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd	LARGE xylosyl- and glucuronyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-73450850-2	chr2	73450750	73450950	+	625.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	3039.0	NM_001289722	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-33356964-3	chr15	33356859	33357059	+	648.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176073, intron 4 of 7)	intron (NM_176073, intron 4 of 7)	48980.0	NR_033608	73486.0	Mm.483393	NM_028551	ENSMUSG00000058101	1700084J12Rik	-	ribosomal protein L7-like 1 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-82815379-2	chr6	82815279	82815479	+	589.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-40925.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-57907387-2	chr9	57907287	57907487	+	839.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MEd|LINE|L1	-3599.0	NM_027086	69459.0	Mm.41735	NM_027086	ENSMUSG00000055720	Ubl7	2300004C15Rik	ubiquitin-like 7 (bone marrow stromal cell-derived)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-32491068-2	chr6	32490968	32491168	+	849.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175750, intron 3 of 31)	intron (NM_175750, intron 3 of 31)	-20073.0	NR_040277	319849.0	Mm.440860	NR_040277	ENSMUSG00000086763	Plxna4os1	B230378P21Rik	plexin A4, opposite strand 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-6283759-4	chr7	6283646	6283846	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2834.0	NM_001024928	384763.0	Mm.276279	NM_001024928	ENSMUSG00000054893	Zfp667	A830025F02Rik|Mip1|ZNF667	zinc finger protein 667	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-145320356-2	chr6	145320252	145320452	+	911.916626	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-67273.0	NR_003625	381827.0	Mm.179075	NM_001001987		1700073E17Rik	-	ribosomal protein L7 pseudogene	pseudo	2.31748149717956	1.83072725657111	1.4655305022115	2.82599177886558	3.48338121890252	3.24879677957416	2.938173980108	4.13279311648545	2.32008625362291	0.00207246420040458	0.0343445103265941
Merged-chr17-88403490-3	chr17	88403389	88403589	+	898.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37215.0	NM_001355743	14236.0	Mm.112824	NM_180974	ENSMUSG00000034998	Foxn2	3230402J05Rik|6030465J18Rik|Fkh19|Foxn1|HTLF	forkhead box N2	protein-coding	-0.457186038372145	-0.444431351375153	-0.267090033917742	-0.451831383252319	-0.17803431430606	0.301777942351563	-0.447686382563723	-0.451268114709452	2.68444039341327	0.285819812425182	1
Merged-chr2-128768279-3	chr2	128768279	128768479	+	818.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 8 of 18)	intron (NM_008587, intron 8 of 18)	-49924.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	1.51201636216828	0.791295647820812	0.770762164005588	2.08092596937029	1.41011162004506	0.795825204978509	0.77535478337356	2.30059400085692	0.23251588318555	0.874289078015752	0.998431161219273
Merged-chr5-102030064-4	chr5	102029970	102030170	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 2 of 66)	intron (NM_172882, intron 2 of 66)	39851.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-70852368-4	chr17	70852280	70852480	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164075)	promoter-TSS (NM_001164075)	-646.0	NM_001164075	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-54902405-1	chr18	54902305	54902505	+	1000.0	f0_c57.idr	intron (NM_001360787, intron 2 of 8)	intron (NM_001360787, intron 2 of 8)	87775.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-110959545-2	chr13	110959445	110959645	+	906.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MD|LINE|L1	-55699.0	NR_131194	102636142.0	Mm.417611	NR_131194		4930526H09Rik	-	RIKEN cDNA 4930526H09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-39006771-1	chr8	39006671	39006871	+	696.0	f0_balb.idr	intron (NM_001357305, intron 1 of 8)	intron (NM_001357305, intron 1 of 8)	926.0	NM_001357306	80286.0	Mm.272722	NM_030254	ENSMUSG00000039530	Tusc3	AU022242|BC003311|N33	tumor suppressor candidate 3	protein-coding	1.23922596595295	0.624386813936075	0.598742302278911	0.39615882873684	0.386151573323457	1.20505209443582	0.769810740166965	0.397387968525526	-0.107886918339663	0.950160437562416	1
Merged-chr6-29531349-2	chr6	29531249	29531449	+	816.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252382, intron 2 of 8)	intron (NM_001252382, intron 2 of 8)	2067.0	NM_001252382	27056.0	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-95398032-2	chr11	95397932	95398132	+	621.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13176.0	NM_001357797	110172.0	Mm.4593	NM_016752	ENSMUSG00000020873	Slc35b1	UGTrel1|Ugalt2	solute carrier family 35, member B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-75182623-3	chr10	75182527	75182727	+	780.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001081412, exon 23 of 23)	3' UTR (NM_001081412, exon 23 of 23)	-29446.0	NM_153406	74392.0	Mm.27716	NM_153406	ENSMUSG00000033444	Specc1l	4930470P14Rik|4932439K10Rik|9530057A13Rik|AI317249|Cytsa|mKIAA0376	sperm antigen with calponin homology and coiled-coil domains 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-77917022-6	chr10	77916850	77917050	+	915.111084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138301, intron 29 of 33)	RLTR11A|LTR|ERVK	-14414.0	NM_145152	237387.0	Mm.133301	NM_145152	ENSMUSG00000051652	Lrrc3	1300011L04Rik|C21orf102	leucine rich repeat containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-158641954-2	chr2	158641854	158642054	+	739.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3371.0	NR_037312	100499529.0		NR_037312	ENSMUSG00000093120	Mir3474	mir-3474|mmu-mir-3474	microRNA 3474	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-57440124-4	chr9	57440016	57440216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357914)	promoter-TSS (NM_001357914)	-2.0	NM_001357916	66812.0	Mm.250508	NM_176831	ENSMUSG00000063849	Ppcdc	1810057I13Rik|8430432M10Rik	phosphopantothenoylcysteine decarboxylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-123185049-4	chr6	123184951	123185151	+	719.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004159, intron 3 of 5)	Lx8|LINE|L1	12028.0	NM_001004159	381809.0	Mm.333372	NM_001004159	ENSMUSG00000067767	Clec4b2	Aplra1|F830043G12Rik|mDCAR1	C-type lectin domain family 4, member b2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-40117038-4	chr9	40116931	40117131	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11008.0	NM_146855	258854.0	Mm.377722	NM_146855	ENSMUSG00000049073	Olfr985	MOR171-4	olfactory receptor 985	protein-coding	1.74984862929787	1.70622343187727	0.893680876933974	1.07105012528198	1.18147313248291	1.3131876990234	1.41706773215847	1.3726530232539	-0.381825977767923	0.760661302981673	0.998431161219273
Merged-chr2-174326827-2	chr2	174326727	174326927	+	795.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310083)	promoter-TSS (NM_001310083)	-941.0	NM_001310083	14683.0	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-158556277-2	chr2	158556177	158556377	+	893.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CG)n|Simple_repeat|Simple_repeat	43481.0	NM_001145015	545481.0	Mm.125371	NM_001145015	ENSMUSG00000074625	Arhgap40	C20orf95|Gm14203	Rho GTPase activating protein 40	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-41018572-3	chr13	41018482	41018682	+	721.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360770, intron 3 of 4)	intron (NM_001360770, intron 3 of 4)	2332.0	NM_001360770	66154.0	Mm.30005	NM_025387	ENSMUSG00000021361	Tmem14c	1110021D01Rik|AU020193|HSPC194	transmembrane protein 14C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-123361639-2	chr7	123361539	123361739	+	847.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001316713, intron 1 of 19)	intron (NM_001316713, intron 1 of 19)	8276.0	NM_001122643	70497.0	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-92082976-4	chr1	92082870	92083070	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207225, intron 2 of 26)	intron (NM_207225, intron 2 of 26)	97371.0	NM_207225	208727.0	Mm.318567	NM_207225	ENSMUSG00000026313	Hdac4	4932408F19Rik|HD4	histone deacetylase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-89265712-4	chr4	89265586	89265786	+	966.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	16506.0	NM_001040654	12578.0	Mm.4733	NM_009877	ENSMUSG00000044303	Cdkn2a	ARF-INK4a|Arf|INK4a-ARF|Ink4a/Arf|MTS1|Pctr1|p16|p16(INK4a)|p16INK4a|p19<ARF>|p19ARF	cyclin dependent kinase inhibitor 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-105498928-3	chr5	105498827	105499027	+	960.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	-20544.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-63135848-4	chr11	63135748	63135948	+	979.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302255, intron 3 of 4)	intron (NM_001302255, intron 3 of 4)	3045.0	NM_001302260	18858.0	Mm.1237	NM_008885	ENSMUSG00000018217	Pmp22	22kDa|Gas-3|HNPP|TRE002|Tr|trembler	peripheral myelin protein 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129365340-4	chr4	129365238	129365438	+	830.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028603, intron 2 of 4)	ID4_|SINE|ID	12690.0	NM_028603	73680.0	Mm.32997	NM_028603	ENSMUSG00000028807	Zbtb8a	2410081M15Rik|AI480941	zinc finger and BTB domain containing 8a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-5790135-4	chr11	5790034	5790234	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146309, intron 1 of 12)	L2b|LINE|L2	1651.0	NM_013810	13169.0	Mm.256925	NM_013810	ENSMUSG00000020476	Dbnl	Abp1|SH3P7|mAbp1	drebrin-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-17924320-1	chr10	17924220	17924420	+	631.0	f0_balb.idr	intron (NM_001033432, intron 1 of 3)	MTD|LTR|ERVL-MaLR	23747.0	NM_001033432	380629.0	Mm.276430	NM_001033432	ENSMUSG00000039879	Heca	Gm869|HDC|HDCL	hdc homolog, cell cycle regulator	protein-coding	-1.84297643846673	-1.8130099360596	-1.82207205372894	-1.6869274651563	-1.84087284540582	-1.81104613735712	-1.82002058892457	-1.6855950118199	0.037684011990387	0.991491645451152	1
Merged-chr2-73514343-2	chr2	73514243	73514443	+	593.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153138, intron 1 of 7)	MLT1H2|LTR|ERVL-MaLR	15144.0	NM_153138	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-55250611-3	chr9	55250498	55250698	+	919.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_032002, intron 3 of 7)	intron (NM_032002, intron 3 of 7)	33027.0	NM_032002	83961.0	Mm.443874	NM_032002	ENSMUSG00000032311	Nrg4	AI552600	neuregulin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128646497-2	chr10	128646379	128646579	+	581.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358536)	promoter-TSS (NM_001358536)	-486.0	NM_001358537	22781.0	Mm.358648	NM_011772	ENSMUSG00000002578	Ikzf4	A630026H08Rik|Eos|Zfpn1a4|Znfn1a4	IKAROS family zinc finger 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34341851-2	chr17	34341724	34341924	+	757.416626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001033978)	TTS (NM_001033978)	2821.0	NM_010381	100504404.0	Mm.15680	NM_010381		H2-Ea-ps	AI323765|E-alpha-f|H-2Ea|H2-Ea|I-Ealpha|Ia-3|Ia3|MHC-H2-Ea	histocompatibility 2, class II antigen E alpha, pseudogene	protein-coding	2.16600126847802	1.29776411803776	1.50738237826183	1.95393902199608	2.18398766166598	2.22598168076256	2.26559656554226	2.4694681825302	1.32018578180976	0.171922049192302	0.639801720288227
Merged-chr3-123174236-2	chr3	123174149	123174349	+	789.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_080451, intron 1 of 4)	MER74B|LTR|ERVL	61900.0	NM_080451	118449.0	Mm.34359	NM_080451	ENSMUSG00000050315	Synpo2	1110069I04Rik|2310068J10Rik|9530006G20Rik|AI848603|Myo	synaptopodin 2	protein-coding	2.44652124584481	1.97190403044168	2.14838246439369	1.11007288462019	1.62843268773985	2.54735672793732	1.13747834072044	1.71220830771844	-0.360917979184753	0.747111642372186	0.998431161219273
Merged-chr17-70958460-3	chr17	70958370	70958570	+	951.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	32046.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-149801352-1	chr4	149801252	149801452	+	597.0	f1_balb.idr	Intergenic	L1MC|LINE|L1	-27085.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	1.52777813431067	0.824643401769551	1.33585238027137	1.41718377655197	0.784588444231304	0.827713358636831	1.69439298334292	1.53481210457519	-0.0663716609224931	0.962957377709289	0.998431161219273
Merged-chr11-89301439-2	chr11	89301339	89301539	+	596.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_008711, exon 1 of 1)	exon (NM_008711, exon 1 of 1)	1120.0	NM_008711	18121.0	Mm.135266	NM_008711	ENSMUSG00000048616	Nog	-	noggin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98791013-2	chr11	98790913	98791113	+	780.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4503.0	NM_001361931	74026.0	Mm.258352	NM_028722	ENSMUSG00000052915	Msl1	2810017F12Rik|4121402D02Rik|4930463F05Rik|AA682082|Msl-1	male specific lethal 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117375315-4	chr10	117375208	117375408	+	796.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013391, intron 1 of 9)	intron (NM_001013391, intron 1 of 9)	1665.0	NM_001013391	432508.0	Mm.478881	NM_001013391	ENSMUSG00000055531	Cpsf6	4733401N12Rik|AI256641|CFIM|CFIM68|HPBRII-4|HPBRII-7	cleavage and polyadenylation specific factor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117378941-2	chr8	117378841	117379041	+	561.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028941, intron 2 of 20)	intron (NM_028941, intron 2 of 20)	29771.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-65567452-3	chr16	65567309	65567509	+	882.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-4712.0	NM_026879	68942.0	Mm.432944	NM_026879	ENSMUSG00000004843	Chmp2b	1190006E07Rik	charged multivesicular body protein 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-10924164-1	chr4	10924064	10924264	+	687.0	f1_balb.idr	Intergenic	Intergenic	49666.0	NM_026005	67157.0	Mm.440552	NM_026005	ENSMUSG00000059482	2610301B20Rik	AI428449	RIKEN cDNA 2610301B20 gene	protein-coding	1.8989220848692	1.81224673370238	1.6190128460895	1.264365516882	1.91524042074504	1.82589747729059	1.63121601062532	1.06607395705946	-0.0585762474641199	0.958684922147322	0.998431161219273
Merged-chr3-51226797-4	chr3	51226608	51226808	+	887.285706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009834, intron 1 of 2)	intron (NM_009834, intron 1 of 2)	2261.0	NM_009834	12457.0	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4568142-4	chr16	4568048	4568248	+	807.299988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8428.0	NM_031182	83383.0	Mm.273210	NM_031182	ENSMUSG00000005718	Tfap4	AI642933|AP-4|D930048N17Rik|Tcfap4|bHLHc41	transcription factor AP4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-158129557-2	chr2	158129457	158129657	+	885.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_009373, intron 6 of 12)	intron (NM_009373, intron 6 of 12)	16835.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-149089110-4	chr5	149089022	149089222	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36065.0	NM_010439	15289.0	Mm.207047	NM_010439	ENSMUSG00000066551	Hmgb1	HMG-1|Hmg1|SBP-1|p30	high mobility group box 1	protein-coding	3.84468118189411	4.64621936695114	5.02342488041343	4.93434197309149	3.99596839473559	4.20058147783003	4.13239540476343	4.3557147242733	-0.646114264318995	0.118684665422812	0.540486429073361
Merged-chr6-29773248-3	chr6	29773152	29773352	+	692.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001171000, intron 1 of 16)	intron (NM_001171000, intron 1 of 16)	4809.0	NM_001171000	74340.0	Mm.210899	NM_021414	ENSMUSG00000029772	Ahcyl2	4631427C17Rik|AI227036|Adohcyase3|mKIAA0828	S-adenosylhomocysteine hydrolase-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-73704708-2	chr18	73704608	73704808	+	773.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008540)	promoter-TSS (NM_008540)	782.0	NR_155448	105246496.0	Mm.109270	NR_155448		4930578L24Rik	-	RIKEN cDNA 4930578L24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-51981686-2	chr3	51981586	51981786	+	980.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	123320.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-45977100-4	chr13	45977020	45977220	+	951.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12129.0	NM_009124	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-36465526-2	chr5	36465426	36465626	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_126488)	promoter-TSS (NR_126488)	341.0	NM_024478	17713.0	Mm.21535	NM_024478	ENSMUSG00000029198	Grpel1	AA408748|mt-GrpE#1|mt-Grpel1	GrpE-like 1, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-136892893-4	chr2	136892782	136892982	+	957.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028834, intron 1 of 7)	intron (NM_028834, intron 1 of 7)	714.0	NM_001355669	74243.0	Mm.330612	NM_028201	ENSMUSG00000027281	Slx4ip	2210009G21Rik|2410004I22Rik|C85661|Slxip	SLX4 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-29382114-2	chr19	29382014	29382214	+	853.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021893, intron 4 of 6)	intron (NM_021893, intron 4 of 6)	14676.0	NM_021893	60533.0	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25781633-4	chr7	25781559	25781759	+	889.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009465, intron 4 of 19)	intron (NM_009465, intron 4 of 19)	7074.0	NM_001190974	26362.0	Mm.4128	NM_009465	ENSMUSG00000002602	Axl	AI323647|Ark|Tyro7|Ufo	AXL receptor tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-50930765-2	chr16	50930665	50930865	+	592.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4A|LINE|L1	147356.0	NR_131005	78639.0	Mm.160109	NR_131005	ENSMUSG00000092276	1700116B05Rik	-	RIKEN cDNA 1700116B05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-74664472-3	chr11	74664398	74664598	+	617.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081158, intron 13 of 25)	intron (NM_001081158, intron 13 of 25)	15003.0	NM_001081158	74148.0	Mm.214574	NM_001081158	ENSMUSG00000020741	Cluh	1300001I01Rik|Kiaa0664|mKIAA0664	clustered mitochondria (cluA/CLU1) homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-124264538-3	chr2	124264430	124264630	+	973.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290997, intron 2 of 20)	intron (NM_001290997, intron 2 of 20)	-42172.0	NR_040612	75946.0	Mm.415059	NR_040612	ENSMUSG00000086954	4930583P06Rik	-	RIKEN cDNA 4930583P06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-92020046-2	chr16	92019946	92020146	+	627.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38276.0	NM_017391	53881.0	Mm.217354	NM_017391	ENSMUSG00000089774	Slc5a3	AA623876|BF642829|Smit1	solute carrier family 5 (inositol transporters), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-158305903-2	chr2	158305815	158306015	+	746.25	f0_balb.idr|f1_balb.idr	promoter-TSS (NM_008489)	promoter-TSS (NM_008489)	-578.0	NM_008489	16803.0	Mm.218846	NM_008489	ENSMUSG00000016024	Lbp	Bpifd2|Ly88	lipopolysaccharide binding protein	protein-coding	3.63562202968949	2.50919029449591	3.68413705436214	3.11640424917529	3.30131610712008	3.34466674133563	2.43896433633242	3.98721242927466	0.0969088579464428	0.879412537599326	0.998431161219273
Merged-chr9-120022422-2	chr9	120022322	120022522	+	624.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_011724, intron 1 of 2)	intron (NM_011724, intron 1 of 2)	1176.0	NM_011724	22437.0	Mm.10117	NM_011724	ENSMUSG00000079243	Xirp1	AI415219|Cmya1	xin actin-binding repeat containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-86358363-4	chr11	86358257	86358457	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080931)	promoter-TSS (NM_001080931)	-832.0	NM_001080931	327987.0	Mm.341886	NM_001080931	ENSMUSG00000034297	Med13	1110067M05Rik|D030023K18|Thrap1|Trap240	mediator complex subunit 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-15956378-2	chr4	15956278	15956478	+	975.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1589.0	NM_013752	27354.0	Mm.20866	NM_013752	ENSMUSG00000028224	Nbn	Nbs1	nibrin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-75721860-2	chr12	75721760	75721960	+	726.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030750, intron 2 of 2)	intron (NM_030750, intron 2 of 2)	13869.0	NM_030750	81535.0	Mm.280199	NM_030750	ENSMUSG00000021054	Sgpp1	AI463453|SPP|SPP1|Spph1	sphingosine-1-phosphate phosphatase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-108710125-4	chr6	108710021	108710221	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49187.0	NR_104577	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	1.43457807755184	1.14361158967334	0.734356088123759	1.32596811242944	0.880876962676477	0.749324251728036	1.68891258370381	1.07670992911217	-0.101396937259082	0.942840261331088	0.998431161219273
Merged-chr11-49082188-3	chr11	49082099	49082299	+	761.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271677, intron 1 of 2)	intron (NM_001271677, intron 1 of 2)	-4818.0	NM_001271676	15953.0	Mm.24769	NM_008330	ENSMUSG00000078920	Ifi47	47kDa|IRG-47|Ifggc1|Igrd|Iigp4|Iipg4|Irgd	interferon gamma inducible protein 47	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-11060119-4	chr19	11060005	11060205	+	809.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9539.0	NR_102366	107350.0	Mm.6381	NM_001177351	ENSMUSG00000075010	AW112010	-	expressed sequence AW112010	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-23410943-2	chr5	23410885	23411085	+	785.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23368.0	NR_040469	269630.0	Mm.425231	NR_040469	ENSMUSG00000073147	5031425E22Rik	-	RIKEN cDNA 5031425E22 gene	ncRNA	0.463429968261892	-0.342195045825113	-0.34702951610704	-0.350770197589795	-0.3560727849109	0.185679575173865	-0.345961901188008	-0.350116021846736	-0.847061420813955	0.747461076167639	1
Merged-chr1-170898010-1	chr1	170897910	170898110	+	548.0	f1_balb.idr	Intergenic	Intergenic	-12470.0	NM_023173	80915.0	Mm.34365	NM_023173	ENSMUSG00000026659	Dusp12	1190004O14Rik|AA027408|AW049275|ESTM36|LMW-DSP4|T-DSP4|VH1|mVH1	dual specificity phosphatase 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-103309058-2	chr15	103308958	103309158	+	986.666626	f1_balb.idr|f1_c57bl6.idr	exon (NM_030720, exon 2 of 2)	exon (NM_030720, exon 2 of 2)	1380.0	NM_030720	80910.0	Mm.160369	NM_030720	ENSMUSG00000063234	Gpr84	EX33	G protein-coupled receptor 84	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-114194991-4	chr7	114194903	114195103	+	964.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	59677.0	NM_033370	70349.0	Mm.277024	NM_033370	ENSMUSG00000030754	Copb1	2610019B04Rik	coatomer protein complex, subunit beta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-65656971-3	chr17	65656879	65657079	+	809.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133685, intron 6 of 6)	intron (NM_133685, intron 6 of 6)	-14775.0	NM_001146002	213272.0	Mm.255732	NM_153519	ENSMUSG00000050612	Txndc2	AU021712|Sptrx-1|Sptrx1|Trx4	thioredoxin domain containing 2 (spermatozoa)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-62575437-4	chr11	62575347	62575547	+	958.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011706, intron 1 of 15)	intron (NM_011706, intron 1 of 15)	961.0	NM_011706	22368.0	Mm.288064	NM_011706	ENSMUSG00000018507	Trpv2	GRC|OTRPC2|VRL-1|Vrl1	transient receptor potential cation channel, subfamily V, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-81302109-2	chr5	81302009	81302209	+	586.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198702, intron 3 of 27)	intron (NM_198702, intron 3 of 27)	280516.0	NM_198702	319387.0	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-122982090-2	chr14	122981990	122982190	+	632.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360598, intron 1 of 18)	intron (NM_001360598, intron 1 of 18)	1052.0	NM_001360599	70551.0	Mm.271988	NM_028651	ENSMUSG00000041594	Tmtc4	4930403J22Rik|5730419O14Rik	transmembrane and tetratricopeptide repeat containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128755067-2	chr2	128754967	128755167	+	961.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 6 of 18)	intron (NM_008587, intron 6 of 18)	56152.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125353069-4	chr6	125352980	125353180	+	954.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011609, intron 1 of 9)	intron (NM_011609, intron 1 of 9)	3357.0	NM_011609	21937.0	Mm.1258	NM_011609	ENSMUSG00000030341	Tnfrsf1a	CD120a|FPF|TNF-R|TNF-R-I|TNF-R1|TNF-R55|TNF-alphaR1|TNFAR|TNFR60|TNFRI|TNFRp55|TNFalpha-R1|Tnfr-2|Tnfr1|p55|p55-R	tumor necrosis factor receptor superfamily, member 1a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-152737022-3	chr2	152736909	152737109	+	975.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010495, exon 2 of 2)	exon (NM_010495, exon 2 of 2)	758.0	NM_001355113	15901.0	Mm.444	NM_010495	ENSMUSG00000042745	Id1	AI323524|D2Wsu140e|Idb1|bHLHb24	inhibitor of DNA binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32089790-4	chr2	32089667	32089867	+	999.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5098.0	NR_151493	241303.0	Mm.250441	NM_175511	ENSMUSG00000050592	Fam78a	A130092J06Rik	family with sequence similarity 78, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76654011-1	chr15	76653911	76654111	+	917.0	f1_balb.idr	intron (NM_019396, intron 2 of 4)	intron (NM_019396, intron 2 of 4)	2883.0	NM_001357882	54151.0	Mm.247752	NM_019396	ENSMUSG00000053929	Cyhr1	1110031M01Rik|AU042374|Chrp	cysteine and histidine rich 1	protein-coding	-1.11301502176196	-1.08843027643983	-1.10065540268584	-0.337074946373353	-1.11242900008663	-1.08578104058399	-1.09788790207088	-1.10867028474752	-2.94135471364006	0.382729701075202	1
Merged-chr2-70702455-3	chr2	70702321	70702521	+	612.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40912.0	NM_027352	70231.0	Mm.271950	NM_027352	ENSMUSG00000014959	Gorasp2	0610011A07Rik|2410043M02Rik|5730520M13Rik|9430094F20Rik|AW552058|GOLPH2|GRASP55|GRS2|p59	golgi reassembly stacking protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-122151364-3	chr2	122151257	122151457	+	761.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009735, intron 2 of 3)	intron (NM_009735, intron 2 of 3)	3670.0	NM_009735	12010.0	Mm.163	NM_009735	ENSMUSG00000060802	B2m	Ly-m11|beta2-m|beta2m	beta-2 microglobulin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-54733731-4	chr14	54733628	54733828	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016972, intron 6 of 10)	intron (NM_016972, intron 6 of 10)	-21554.0	NM_207131	110794.0	Mm.236223	NM_207131	ENSMUSG00000052435	Cebpe	C/EBPe|C/EBPepsilon|CRP1|Gm294	CCAAT/enhancer binding protein (C/EBP), epsilon	protein-coding	5.07101570526626	5.28594008496581	4.51628371809526	5.44774237568216	3.79093385355367	4.40143708486239	4.83236826964752	4.3635479194675	-0.900221974642186	0.0174817762463371	0.162342377247332
Merged-chr10-13823629-4	chr10	13823529	13823729	+	677.321411	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025446, intron 2 of 5)	RSINE1|SINE|B4	45328.0	NM_025446	66253.0	Mm.45755	NM_025446	ENSMUSG00000019806	Aig1	1500031O19Rik|AV064870|AW413422|CGI-103	androgen-induced 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-72048843-2	chr10	72048743	72048943	+	617.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	-68153.0	NR_003644	108950.0	Mm.212793	NM_175390		1700049L16Rik	-	hematological and neurological expressed 1-like pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116147080-3	chr11	116147010	116147210	+	734.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172571, intron 24 of 30)	intron (NM_172571, intron 24 of 30)	-8242.0	NM_024177	60441.0	Mm.29974	NM_024177	ENSMUSG00000020775	Mrpl38	1110036N21Rik|4733401F03Rik|MRP-L3|R75240|Rpml3	mitochondrial ribosomal protein L38	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32483547-2	chr2	32483447	32483647	+	734.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-32077.0	NM_146118	227731.0	Mm.37395	NM_146118	ENSMUSG00000026819	Slc25a25	1110030N17Rik|MCSC|mKIAA1896	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-69720286-1	chr2	69720186	69720386	+	658.0	f1_c57bl6.idr	Intergenic	Intergenic	-2802.0	NM_001081086	228005.0	Mm.11815	NM_001081086	ENSMUSG00000042133	Ppig	AU019516|AU022200|B230312B02Rik|CYP|SRCyp	peptidyl-prolyl isomerase G (cyclophilin G)	protein-coding	-2.05752322593321	-2.15521190974092	-2.16307242109104	-2.16952927915413	-2.17938029103484	-2.15350850414045	-2.16129297361887	-2.16837350464794	-0.683654500252594	0.846597994014493	1
Merged-chr11-97839618-3	chr11	97839515	97839715	+	865.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010688)	TTS (NM_010688)	-1165.0	NM_001080935	68127.0	Mm.110270	NM_001080935	ENSMUSG00000050538	B230217C12Rik	AI840637	RIKEN cDNA B230217C12 gene	protein-coding	1.83717980022779	2.01274596937759	1.05995424266842	2.32614711628484	0.768521916195262	0.835998535031082	0.814899973294053	1.23011920831406	-3.78809559421228	0.0092402919180511	0.102970609070691
Merged-chr18-25880374-2	chr18	25880274	25880474	+	599.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-126217.0	NM_001362334	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-46619932-2	chr4	46619832	46620032	+	618.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198664, intron 6 of 12)	intron (NM_198664, intron 6 of 12)	-18003.0	NM_001164804	107684.0	Mm.416311	NM_178893	ENSMUSG00000028337	Coro2a	9030208C03Rik|AI563590|IR10	coronin, actin binding protein 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-86768075-3	chr12	86768003	86768203	+	787.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33734.0	NM_001195767	627607.0	Mm.341880	NM_001195767	ENSMUSG00000059114	Lrrc74a	EG627607|Gm6772|Lrrc74	leucine rich repeat containing 74A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-61141109-4	chr1	61141025	61141225	+	992.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	163211.0	NM_017480	54167.0	Mm.42044	NM_017480	ENSMUSG00000026009	Icos	AILIM|CCLP|CRP-1|H4|Ly115	inducible T cell co-stimulator	protein-coding	1.03105271906377	2.34525818794201	1.95180414694765	1.47577886708866	2.08964191862616	1.75573637704477	2.08214089300353	1.06673764678262	0.0324336239358258	0.977847869713944	0.998431161219273
Merged-chr12-69157098-2	chr12	69156998	69157198	+	603.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_009093)	TTS (NM_009093)	2088.0	NM_009093	20090.0	Mm.379006	NM_009093	ENSMUSG00000034892	Rps29	-	ribosomal protein S29	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-107838373-6	chr13	107838302	107838502	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 2 of 14)	Lx8|LINE|L1	51662.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-12875099-2	chr13	12874999	12875199	+	629.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-75020.0	NM_011118	18812.0	Mm.457984	NM_011118	ENSMUSG00000056457	Prl2c3	Ghd1|MRP-2|MRP-3|Mrpplf3|PLF-2|PLF-3|Plf2|Prl2c4|mrp/plf3	prolactin family 2, subfamily c, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125425953-6	chr6	125425864	125426064	+	882.638916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur3|SINE|Alu	-45460.0	NM_198604	213522.0	Mm.333396	NM_198604	ENSMUSG00000038167	Plekhg6	BC026778|Gm155	pleckstrin homology domain containing, family G (with RhoGef domain) member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-48592518-3	chr4	48592367	48592567	+	924.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021436, intron 1 of 9)	intron (NM_021436, intron 1 of 9)	7293.0	NM_021436	230157.0	Mm.422686	NM_021436	ENSMUSG00000028347	Tmeff1	A830033E11|M7365|TR-1|Tr1	transmembrane protein with EGF-like and two follistatin-like domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-80258897-2	chr1	80258797	80258997	+	570.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44953.0	NM_173425	241128.0	Mm.145511	NM_173425	ENSMUSG00000043230	Fam124b	A830043J08Rik	family with sequence similarity 124, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-74788814-4	chr1	74788696	74788896	+	681.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3223.0	NM_009518	22409.0	Mm.5130	NM_009518	ENSMUSG00000026167	Wnt10a	-	wingless-type MMTV integration site family, member 10A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-55496147-2	chr12	55496047	55496247	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3500.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127969319-2	chr7	127969219	127969419	+	591.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_139149, intron 1 of 14)	intron (NM_139149, intron 1 of 14)	1840.0	NM_139149	233908.0	Mm.277680	NM_139149	ENSMUSG00000030795	Fus	D430004D17Rik|D930039C12Rik|Fus1|Tls	fused in sarcoma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-9990650-2	chr9	9990550	9990750	+	546.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033359, intron 5 of 20)	intron (NM_001033359, intron 5 of 20)	96219.0	NR_105745	102466147.0		NR_105745	ENSMUSG00000098408	Mir6237	Gm27411|mmu-mir-6237	microRNA 6237	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-105787169-4	chr1	105787064	105787264	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009399, intron 1 of 9)	intron (NM_009399, intron 1 of 9)	6441.0	NM_009399	21934.0	Mm.6251	NM_009399	ENSMUSG00000026321	Tnfrsf11a	Ly109|ODFR|OFE|Rank|TRANCE-R|mRANK	tumor necrosis factor receptor superfamily, member 11a, NFKB activator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100850144-2	chr7	100850044	100850244	+	674.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_177073, exon 6 of 11)	exon (NM_177073, exon 6 of 11)	13269.0	NM_001358914	320100.0	Mm.40336	NM_177073	ENSMUSG00000008318	Relt	E430021K24Rik|Tnfrsf19l	RELT tumor necrosis factor receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91359551-4	chr16	91359460	91359660	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13223.0	NM_010509	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	3.08320128979352	3.37443132200877	2.91429582815778	4.60663225734874	3.27640031835321	2.90419738029536	2.9389303886255	4.05900927776437	-0.452511145902606	0.478260651704575	0.928092227925527
Merged-chr3-84772745-2	chr3	84772645	84772845	+	612.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-42832.0	NM_001177773	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-27178769-3	chr14	27178690	27178890	+	928.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289686, intron 2 of 12)	MLT1D|LTR|ERVL-MaLR	34797.0	NM_001289686	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-30601596-4	chr16	30601488	30601688	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177632, exon 1 of 1)	exon (NM_177632, exon 1 of 1)	1865.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70528763-3	chr11	70528653	70528853	+	813.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008946)	TTS (NM_008946)	3396.0	NM_008946	19175.0	Mm.98	NM_008946	ENSMUSG00000018286	Psmb6	Lmp19|Mpnd	proteasome (prosome, macropain) subunit, beta type 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-118766213-4	chr10	118766118	118766318	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	102685.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128896105-2	chr10	128896005	128896205	+	765.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4387.0	NM_010272	14561.0	Mm.299218	NM_010272	ENSMUSG00000025352	Gdf11	BMP-11|Bmp11	growth differentiation factor 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-53565733-2	chr6	53565633	53565833	+	604.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001327821, intron 5 of 10)	PB1|SINE|Alu	-7641.0	NM_172728	231991.0	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-120477581-4	chr14	120477473	120477673	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029519)	promoter-TSS (NM_029519)	-888.0	NM_029519	76108.0	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131937866-4	chr1	131937788	131937988	+	964.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25027.0	NM_001177628	212980.0	Mm.200307	NM_145977	ENSMUSG00000026435	Slc45a3	2210413P12Rik|AU023994|AU043764|IPCA-6|PRST|Pcanap6	solute carrier family 45, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28383096-4	chr7	28383035	28383235	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3907.0	NM_011756	22695.0	Mm.389856	NM_011756	ENSMUSG00000044786	Zfp36	Gos24|Nup475|TIS11D|TISII|Tis11|Ttp|Zfp-36	zinc finger protein 36	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118758706-2	chr9	118758561	118758761	+	886.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 1 of 13)	MLT1E1|LTR|ERVL-MaLR	46969.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-16618735-4	chr1	16618631	16618831	+	963.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271016, intron 1 of 6)	CpG	607.0	NM_025773	66799.0	Mm.122430	NM_025773	ENSMUSG00000025939	Ube2w	6130401J04Rik	ubiquitin-conjugating enzyme E2W (putative)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-156252805-1	chr4	156252705	156252905	+	567.0	f0_c57.idr	intron (NM_001355709, intron 2 of 10)	intron (NM_001355709, intron 2 of 10)	2537.0	NM_001355709	231004.0	Mm.406833	NM_173736	ENSMUSG00000096351	Samd11	BC026991|mr-s	sterile alpha motif domain containing 11	protein-coding	2.12699150859937	1.06685093855784	2.32414374134804	1.74398755183599	0.996103974151803	1.07210801646697	1.94264834366174	2.1808879696059	-0.639004227036011	0.606650569304244	0.974576632476413
Merged-chr6-77419240-2	chr6	77419140	77419340	+	563.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145732, intron 8 of 18)	intron (NM_145732, intron 8 of 18)	-36765.0	NR_045141	70753.0	Mm.490700	NR_045141	ENSMUSG00000108077	6330415B21Rik	-	RIKEN cDNA 6330415B21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-172054222-2	chr1	172054122	172054322	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_010916, exon 2 of 2)	exon (NM_010916, exon 2 of 2)	3374.0	NM_010916	18071.0	Mm.2474	NM_010916	ENSMUSG00000051251	Nhlh1	Hen1|Nscl|Tal2|bHLHa35	nescient helix loop helix 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-100446198-2	chr3	100446098	100446298	+	579.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19793.0	NR_040543	73806.0	Mm.396549	NR_040543	ENSMUSG00000086923	4930406D18Rik	-	RIKEN cDNA 4930406D18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-3399543-4	chr6	3399428	3399628	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010156)	promoter-TSS (NM_010156)	43.0	NM_010156	209086.0	Mm.196013	NM_010156	ENSMUSG00000047735	Samd9l	AA175286|ESTM25|mKIAA2005	sterile alpha motif domain containing 9-like	protein-coding	4.11110500210575	5.39318221765109	4.62495036875953	4.2779345186339	5.56188271634398	5.72242960998627	6.04653304388899	5.06230679405475	1.12030130604863	0.00186983917784621	0.0317521361627655
Merged-chr5-143622463-4	chr5	143622347	143622547	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011182)	promoter-TSS (NM_011182)	0.0	NM_011182	19159.0	Mm.281003	NM_011182	ENSMUSG00000018001	Cyth3	AI648983|ARNO3|CLM3|Grp1|Pscd3	cytohesin 3	protein-coding	0.422235360456719	0.462073968425011	1.64445909391759	0.439303366489346	0.913011643699073	0.711399586637061	1.49111554924072	0.441068677494597	0.255806293943214	0.881882624979815	0.998431161219273
Merged-chr12-85394217-4	chr12	85394122	85394322	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19505.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-83731989-2	chr16	83731889	83732089	+	820.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-639154.0	NR_040567	75247.0	Mm.417813	NR_040567		4930553E22Rik	-	RIKEN cDNA 4930553E22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124854906-3	chr6	124854816	124855016	+	947.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013534, exon 4 of 15)	exon (NM_013534, exon 4 of 15)	2771.0	NM_013534	14789.0	Mm.35708	NM_013534	ENSMUSG00000023191	P3h3	BC016431|Grcb|Leprel2	prolyl 3-hydroxylase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70696696-4	chr8	70696605	70696805	+	994.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1034.0	NM_010592	16478.0	Mm.419851	NM_010592	ENSMUSG00000071076	Jund	Jund1	jun D proto-oncogene	protein-coding	3.7752829633725	3.18687588481761	3.29082612710075	3.79855208604399	3.90250617333796	2.60637842682226	4.20090544920501	3.11141139114841	0.0940751023624652	0.87230895716536	0.998431161219273
Merged-chr13-73638873-2	chr13	73638773	73638973	+	580.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009354, intron 6 of 15)	intron (NM_009354, intron 6 of 15)	11962.0	NM_001362388	21752.0	Mm.10109	NM_009354	ENSMUSG00000021611	Tert	EST2|TCS1|TP2|TR|TRT	telomerase reverse transcriptase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102372739-2	chr12	102372639	102372839	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177620, intron 6 of 9)	intron (NM_177620, intron 6 of 9)	67074.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-106794648-4	chr6	106794553	106794753	+	913.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021449, intron 3 of 10)	intron (NM_021449, intron 3 of 10)	5434.0	NM_021449	58799.0	Mm.290085	NM_021449	ENSMUSG00000005362	Crbn	2610203G15Rik|2900045O07Rik|AF229032|AW108261|piL	cereblon	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-87857382-4	chr10	87857292	87857492	+	962.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001314010)	promoter-TSS (NM_001314010)	-873.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-73140397-2	chr15	73140297	73140497	+	995.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153178, intron 2 of 18)	intron (NM_153178, intron 2 of 18)	44550.0	NM_153178	239528.0	Mm.23095	NM_153178	ENSMUSG00000036698	Ago2	1110029L17Rik|2310051F07Rik|AI225898|AL022874|AW546247|Eif2c2|Gerp95|Gm10365|mKIAA4215	argonaute RISC catalytic subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-67486694-1	chr18	67486594	67486794	+	818.333313	f0_balb.idr	Intergenic	L1_Mur3|LINE|L1	21845.0	NM_144867	225655.0	Mm.221420	NM_144867	ENSMUSG00000024530	Prelid3a	A230074A19Rik|BC019561|Slmo1	PRELI domain containing 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56338012-3	chr17	56337903	56338103	+	657.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172132, intron 1 of 22)	intron (NM_172132, intron 1 of 22)	11953.0	NM_001357909	193796.0	Mm.45047	NM_172132	ENSMUSG00000024201	Kdm4b	4732474L06Rik|Jmjd2b	lysine (K)-specific demethylase 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71603711-2	chr8	71603566	71603766	+	866.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_001166213, exon 9 of 15)	exon (NM_001166213, exon 9 of 15)	6020.0	NM_001166213	100037278.0	Mm.482159	NM_001166213	ENSMUSG00000043243	Fam129c	Bcnp1	family with sequence similarity 129, member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-35123337-2	chr3	35123237	35123437	+	750.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-200686.0	NR_105799	102466155.0		NR_105799	ENSMUSG00000098862	Mir6378	Gm27706|mmu-mir-6378	microRNA 6378	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106751202-4	chr11	106751098	106751298	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271372)	promoter-TSS (NM_001271372)	-28.0	NM_001271375	380732.0	Mm.343952	NM_001033435	ENSMUSG00000040528	Milr1	Allergin-1|Gm885|Mca32	mast cell immunoglobulin like receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-42282748-3	chr13	42282648	42282848	+	933.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18728.0	NM_010104	13614.0	Mm.14543	NM_010104	ENSMUSG00000021367	Edn1	ET-1|PPET1|preproET	endothelin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-33311330-2	chr6	33311230	33311430	+	662.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347089, intron 5 of 9)	intron (NM_001347089, intron 5 of 9)	62202.0	NM_001347089	20336.0	Mm.265512	NM_009148	ENSMUSG00000029763	Exoc4	C78892|Sec8|Sec8l1	exocyst complex component 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36299223-2	chr1	36299123	36299323	+	729.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8510.0	NM_001172206	214855.0	Mm.34316	NM_145996	ENSMUSG00000037447	Arid5a	D430024K22Rik|Mrf1	AT rich interactive domain 5A (MRF1-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-79298061-4	chr12	79297950	79298150	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252562, intron 1 of 7)	intron (NM_001252562, intron 1 of 7)	699.0	NM_001252562	19363.0	Mm.341756	NM_009014	ENSMUSG00000059060	Rad51b	AI553500|R51H2|Rad51l1|mREC2	RAD51 paralog B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-31202360-4	chr5	31202228	31202428	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175311)	promoter-TSS (NM_175311)	-25.0	NM_175311	101023.0	Mm.45033	NM_175311	ENSMUSG00000043059	Zfp513	AW990386|D430028M17Rik|Znf513	zinc finger protein 513	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64488176-4	chr5	64488079	64488279	+	998.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11171.0	NR_045413	77382.0	Mm.366742	NR_045411	ENSMUSG00000105352	C030018K13Rik	-	RIKEN cDNA C030018K13 gene	ncRNA	2.38122251671224	1.90769395917731	2.70704816396866	1.28245400310602	2.90607617831363	3.46670122845724	3.00385809839548	1.28904649278337	1.35303437750061	0.155657423965949	0.610928767307068
Merged-chr14-59297583-4	chr14	59297470	59297670	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172603)	promoter-TSS (NM_172603)	-48.0	NM_172603	219131.0	Mm.254918	NM_172603	ENSMUSG00000044703	Phf11a	4933417L10Rik|Phf11|Phf11l	PHD finger protein 11A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72440531-1	chr6	72440431	72440631	+	633.0	f0_balb.idr	promoter-TSS (NM_145569)	promoter-TSS (NM_145569)	-973.0	NM_145569	232087.0	Mm.29815	NM_145569	ENSMUSG00000053907	Mat2a	D630045P18Rik	methionine adenosyltransferase II, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-130899047-1	chr4	130898947	130899147	+	642.0	f0_balb.idr	Intergenic	Intergenic	-14287.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-84363045-4	chr1	84362948	84363148	+	992.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-78403.0	NM_001003948	98496.0	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4|P-CLI1	phosphotyrosine interaction domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5712135-4	chr19	5712027	5712227	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114595, intron 11 of 17)	intron (NM_001114595, intron 11 of 17)	7656.0	NM_010609	16530.0	Mm.440033	NM_010609	ENSMUSG00000024936	Kcnk7	2310014G03Rik|Kcnk6|Kcnk8|Knot|Mlk3	potassium channel, subfamily K, member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-95829136-2	chr16	95829036	95829236	+	557.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	69577.0	NR_040485	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-68727072-2	chr10	68726972	68727172	+	569.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177794, intron 1 of 5)	GA-rich|Low_complexity|Low_complexity	3326.0	NM_177794	327766.0	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-8643529-3	chr13	8643403	8643603	+	988.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110345, intron 3 of 10)	intron (NR_110345, intron 3 of 10)	227541.0	NM_001039389	207615.0	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5568167-2	chr17	5568067	5568267	+	794.267822	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	75567.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-109552223-3	chr5	109552127	109552327	+	783.244446	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6766.0	NM_016715	57914.0	Mm.35771	NM_016715	ENSMUSG00000033467	Crlf2	CRLM2|Ly114|Tpte2|Tslpr	cytokine receptor-like factor 2	protein-coding	0.970245316574974	0.467448014338365	0.461428492137212	1.11628637636111	1.11843984534986	0.468811590117927	0.462751960948763	0.608663319558258	-0.510141312092478	0.780580370508389	1
Merged-chr6-147799201-3	chr6	147799101	147799301	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	108960.0	NR_033636	100039727.0	Mm.396220	NR_033636	ENSMUSG00000085077	1700049E15Rik	Gm15761	RIKEN cDNA 1700049E15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-86826239-2	chr10	86826139	86826339	+	606.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175331, intron 12 of 13)	intron (NM_175331, intron 12 of 13)	47234.0	NM_175331	103466.0	Mm.200446	NM_175331	ENSMUSG00000054027	Nt5dc3	AU040402|AW540062|C630002B14Rik|TU12B1-TY	5'-nucleotidase domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-57692056-4	chr6	57691952	57692152	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025574)	promoter-TSS (NM_025574)	26.0	NM_025574	66459.0	Mm.44201	NM_025574	ENSMUSG00000043162	Pyurf	2610022G08Rik|AI847956|Prey	Pigy upstream reading frame	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-100002057-3	chr13	100001980	100002180	+	926.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030026, intron 1 of 16)	intron (NM_030026, intron 1 of 16)	13559.0	NM_030026	78038.0	Mm.137327	NM_030026	ENSMUSG00000021646	Mccc2	4930552N12Rik|MCCB	methylcrotonoyl-Coenzyme A carboxylase 2 (beta)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30944185-2	chr7	30944085	30944285	+	760.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_032541)	promoter-TSS (NM_032541)	-156.0	NM_032541	84506.0	Mm.439939	NM_032541	ENSMUSG00000050440	Hamp	Hamp1|Hepc|Hepc1	hepcidin antimicrobial peptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-146478900-2	chr4	146478800	146479000	+	587.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2B2|LINE|L1	-23100.0	NM_001243138	100041433.0	Mm.441741	NM_001243138	ENSMUSG00000056300	Zfp981	Gm13247	zinc finger protein 981	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-124645912-1	chr2	124645812	124646012	+	558.0	f0_balb.idr	intron (NM_001291000, intron 1 of 18)	intron (NM_001291000, intron 1 of 18)	-7669.0	NM_199240	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-61310233-4	chr9	61310202	61310402	+	974.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16493.0	NR_045334	622037.0	Mm.126243	NR_045334	ENSMUSG00000111658	B930092H01Rik	-	RIKEN cDNA B930092H01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-90128861-2	chr7	90128761	90128961	+	944.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_046006, intron 1 of 3)	intron (NR_046006, intron 1 of 3)	613.0	NR_046006	78329.0	Mm.389940	NR_046006	ENSMUSG00000097162	2310010J17Rik	-	RIKEN cDNA 2310010J17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-26817038-2	chr14	26816938	26817138	+	642.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-77566.0	NM_001170748	142687.0	Mm.138259	NM_080856	ENSMUSG00000021898	Asb14	Asb-14	ankyrin repeat and SOCS box-containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-64437335-1	chr13	64437235	64437435	+	662.0	f1_balb.idr	intron (NM_053180, intron 5 of 7)	intron (NM_053180, intron 5 of 7)	4782.0	NM_053180	105278.0	Mm.74982	NM_053180	ENSMUSG00000021483	Cdk20	4932702G04Rik|AU019450|AW558027|CDCH|Ccrk|PNQLARE|p42	cyclin-dependent kinase 20	protein-coding	-0.744838164890065	-0.735121714262048	-0.738312611999123	-0.116140129639518	-0.599230801191192	-0.734401450999953	-0.557810918905887	-0.740340589723461	-1.28123084477407	0.644715951555034	1
Merged-chr7-19823632-4	chr7	19823536	19823736	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033601)	promoter-TSS (NM_033601)	-881.0	NM_033601	12051.0	Mm.439658	NM_033601	ENSMUSG00000053175	Bcl3	AI528691|Bcl-3	B cell leukemia/lymphoma 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-21938238-4	chr3	21938131	21938331	+	960.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-138421.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0.216187680715198	0.107150981875997	0.598037902534436	0.0997967078407655	0.0953445962607752	0.279295692392903	0.509638603018738	0.368329925247424	0.351262214549683	0.858559407680894	1
Merged-chr15-96621894-4	chr15	96621803	96622003	+	814.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166456, intron 2 of 15)	intron (NM_001166456, intron 2 of 15)	20059.0	NM_134086	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-60251823-2	chr10	60251723	60251923	+	582.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-25805.0	NM_001146123	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-34768579-4	chr14	34768469	34768669	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-51567.0	NM_008166	14803.0	Mm.121569	NM_008166	ENSMUSG00000041078	Grid1	GluD1|GluRdelta1	glutamate receptor, ionotropic, delta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129928656-3	chr4	129928565	129928765	+	955.06665	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22439.0	NR_045190	319894.0	Mm.59196	NR_045190	ENSMUSG00000086369	E330017L17Rik	-	RIKEN cDNA E330017L17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-6646452-2	chr13	6646352	6646552	+	566.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019703, intron 1 of 21)	intron (NM_019703, intron 1 of 21)	2319.0	NM_019703	56421.0	Mm.273874	NM_019703	ENSMUSG00000021196	Pfkp	1200015H23Rik|9330125N24Rik|ATP-PFK|PFK-C|PFK-P	phosphofructokinase, platelet	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3915813-2	chr19	3915713	3915913	+	743.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_026316, intron 8 of 9)	intron (NM_026316, intron 8 of 9)	-3039.0	NM_001271444	225887.0	Mm.44227	NM_144870	ENSMUSG00000059734	Ndufs8	BC021616|CI-23kD|TYKY	NADH dehydrogenase (ubiquinone) Fe-S protein 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-155135301-4	chr2	155135226	155135426	+	891.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001243712, intron 1 of 25)	RSINE1|SINE|B4	1845.0	NM_008395	16396.0	Mm.208286	NM_008395	ENSMUSG00000027598	Itch	6720481N21Rik|8030492O04Rik|A130065M08|AIP4|C230047C07Rik	itchy, E3 ubiquitin protein ligase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-76393086-2	chr5	76392986	76393186	+	664.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29309.0	NM_019515	56183.0	Mm.154879	NM_019515	ENSMUSG00000029236	Nmu	-	neuromedin U	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46962390-4	chr19	46962284	46962484	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028353)	promoter-TSS (NR_028353)	-33.0	NR_028353	76952.0	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135307093-4	chr4	135306998	135307198	+	974.81665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34338.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-72206503-6	chr11	72206269	72206469	+	912.577759	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155065, intron 1 of 19)	intron (NR_155065, intron 1 of 19)	1113.0	NR_155065	74477.0	Mm.289697	NM_028963	ENSMUSG00000020807	4933427D14Rik	C85113|Kiaa0753|MNR	RIKEN cDNA 4933427D14 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91729901-3	chr16	91729803	91730003	+	931.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110276, intron 1 of 15)	CpG	532.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-72376230-4	chr2	72376134	72376334	+	875.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023057, intron 7 of 19)	(TG)n|Simple_repeat|Simple_repeat	90533.0	NM_178084	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-92470919-3	chr5	92470812	92471012	+	912.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007644, intron 2 of 11)	B4A|SINE|B4	12355.0	NR_105843	102466159.0		NR_105843	ENSMUSG00000099160	Mir6415	Gm27714|mmu-mir-6415	microRNA 6415	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71102095-2	chr17	71101995	71102195	+	886.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083934, intron 24 of 36)	intron (NM_001083934, intron 24 of 36)	-81437.0	NM_001357791	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	0.265106953949871	0.647089518448801	0.279343470354624	0.914688165733165	0.266431461192532	0.654912765245678	0.280869564933523	0.922618466133073	0.032089074667459	0.986704921885025	1
Merged-chr18-34504071-1	chr18	34503971	34504171	+	747.0	f1_c57bl6.idr	intron (NM_146084, intron 1 of 20)	MTD|LTR|ERVL-MaLR	2752.0	NM_146084	225358.0	Mm.226899	NM_146084	ENSMUSG00000036501	Fam13b	2610024E20Rik|AW060714|AW546153	family with sequence similarity 13, member B	protein-coding	1.29523769888028	1.78576717063608	2.0631792853123	0.946846446819097	0.920830544217323	2.05493427230833	2.26282394662494	1.18204648708011	0.394603521709489	0.751695150651073	0.998431161219273
Merged-chr8-68195603-4	chr8	68195441	68195641	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-80987.0	NM_028182	72281.0	Mm.40974	NM_028182	ENSMUSG00000053886	Sh2d4a	2210402M20Rik|SH2A	SH2 domain containing 4A	protein-coding	5.06926311834733	4.36519797351069	4.70756341703845	5.16033378168894	4.56450814864287	4.8436419840398	3.23105084734238	5.62461654189795	-0.0630553458076404	0.889650815966744	0.998431161219273
Merged-chr2-163100689-4	chr2	163100583	163100783	+	931.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11082.0	NM_026630	68236.0	Mm.33648	NM_026630	ENSMUSG00000070708	Gtsf1l	2410116G06Rik	gametocyte specific factor 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-89117473-4	chr2	89117373	89117573	+	991.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4963.0	NM_146902	258904.0	Mm.330377	NM_146902	ENSMUSG00000075102	Olfr1221	MOR233-3	olfactory receptor 1221	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-148704861-2	chr4	148704733	148704933	+	844.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61516.0	NM_001085505	230909.0	Mm.332067	NM_001085505	ENSMUSG00000070577	Gm572	b2b1167Clo	predicted gene 572	protein-coding	0.786255808515616	0.488246001403516	1.16324547441932	1.78942410441651	1.04755604730701	0.490992371373896	0.478654009913996	0.467924415595112	-2.30340780405749	0.17378189799921	0.641417723193556
Merged-chr16-92671614-3	chr16	92671514	92671714	+	862.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111022, intron 4 of 6)	intron (NM_001111022, intron 4 of 6)	25715.0	NM_001111023	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-49416322-1	chr2	49416222	49416422	+	544.0	f1_balb.idr	Intergenic	B1F2|SINE|Alu	-35164.0	NM_172663	227867.0	Mm.29167	NM_172663	ENSMUSG00000069495	Epc2	5830499L14|D2Ertd694e	enhancer of polycomb homolog 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19240007-2	chr7	19239907	19240107	+	734.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_207525, intron 1 of 1)	B3|SINE|B2	11618.0	NM_207525	403187.0	Mm.239583	NM_207525	ENSMUSG00000052214	Opa3	D630048P19Rik|Gm1425|Gm472	optic atrophy 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140643063-2	chr5	140642963	140643163	+	748.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001308040, intron 1 of 12)	RSINE1|SINE|B4	5968.0	NM_001308040	78339.0	Mm.28947	NM_175274	ENSMUSG00000036565	Ttyh3	2900029G13Rik|AI414930|TTY3|mTTY3	tweety family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-20107008-2	chr11	20106908	20107108	+	664.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146243, intron 1 of 8)	intron (NM_146243, intron 1 of 8)	5943.0	NM_146243	66713.0	Mm.259045	NM_146243	ENSMUSG00000020152	Actr2	4921510D23Rik|AA409782|Arp2|D6Ertd746e	ARP2 actin-related protein 2	protein-coding	-1.18302134691506	-1.15893813914636	-1.16954601498264	-1.01688116837571	-0.706931804553649	-1.15663936820083	-1.16714462441132	-1.17669990531683	1.47460249523148	0.657520571745587	1
Merged-chr4-130821130-3	chr4	130821037	130821237	+	730.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011520, intron 3 of 4)	intron (NM_011520, intron 3 of 4)	28600.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-75638942-4	chr7	75638843	75639043	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 8 of 36)	intron (NM_029332, intron 8 of 36)	183409.0	NM_029332	75547.0	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	3.7843840312713	4.43626697479978	3.71735128983195	4.28839858495839	5.20718198586891	4.7813671339285	4.59035956522863	4.55164027463816	0.930685766072544	0.0196614453035337	0.177821541807372
Merged-chr3-142616917-2	chr3	142616817	142617017	+	569.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010259, intron 10 of 10)	PB1D11|SINE|Alu	-3746.0	NM_010260	14469.0	Mm.24038	NM_010260	ENSMUSG00000028270	Gbp2	-	guanylate binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-53314924-2	chr11	53314824	53315024	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER92C|LTR|ERV1	-9765.0	NM_026479	67966.0	Mm.288072	NM_026479	ENSMUSG00000018239	Zcchc10	2410141K03Rik|AA675321|D11Ertd416e	zinc finger, CCHC domain containing 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-71103692-3	chr1	71103605	71103805	+	947.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007525)	promoter-TSS (NM_007525)	-733.0	NM_007525	12021.0	Mm.10764	NM_007525	ENSMUSG00000026196	Bard1	-	BRCA1 associated RING domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-77280839-4	chr1	77280727	77280927	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	215941.0	NR_105770	102465180.0		NR_105770	ENSMUSG00000099141	Mir6352	Gm27481|mmu-mir-6352	microRNA 6352	ncRNA	0.645651024971154	0.592769766019729	0.719224623513467	1.18782754188036	0.763961655729618	0.400479761407113	0.393181729639305	0.554684258036475	-1.68022999382777	0.312737000489123	1
Merged-chr5-77030153-2	chr5	77030053	77030253	+	650.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027970, intron 1 of 8)	intron (NM_027970, intron 1 of 8)	-11290.0	NR_077218	68246.0	Mm.319633	NR_077218	ENSMUSG00000086632	1700112J05Rik	1700110A09Rik	RIKEN cDNA 1700112J05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-47733312-2	chr9	47733212	47733412	+	765.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	84896.0	NR_046048	100038460.0	Mm.447649	NR_046048		Gm10677	-	predicted gene 10677	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55660341-4	chr19	55660235	55660435	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045318, intron 2 of 3)	intron (NR_045318, intron 2 of 3)	41869.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-7010997-1	chr12	7010897	7011097	+	762.0	f1_balb.idr	Intergenic	Lx|LINE|L1	369333.0	NR_045045	73575.0	Mm.179463	NR_045045	ENSMUSG00000102096	1700101O22Rik	-	RIKEN cDNA 1700101O22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126857462-2	chr8	126857362	126857562	+	992.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	8442.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-124278549-1	chr8	124278449	124278649	+	619.5	f0_balb.idr	intron (NM_139272, intron 1 of 15)	intron (NM_139272, intron 1 of 15)	47155.0	NM_139272	108148.0	Mm.33808	NM_139272	ENSMUSG00000089704	Galnt2	AI480629	polypeptide N-acetylgalactosaminyltransferase 2	protein-coding	2.08689265554105	1.75999373010373	1.34052046083696	1.08435952500894	2.18447917909146	1.13190587257607	2.20079723721454	2.21907320898731	1.04225452200506	0.36353073711238	0.858903333095609
Merged-chr15-69867059-2	chr15	69866959	69867159	+	610.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3A|LINE|L1	-57174.0	NR_045071	100503580.0	Mm.404646	NR_045071	ENSMUSG00000116483	Gm19782	-	predicted gene, 19782	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-158061715-4	chr3	158061645	158061845	+	985.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359763, intron 11 of 13)	intron (NM_001359763, intron 11 of 13)	25063.0	NM_001289524	67144.0	Mm.358704	NM_024194	ENSMUSG00000063052	Lrrc40	2610040E16Rik|AI837674	leucine rich repeat containing 40	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-100520859-2	chr10	100520759	100520959	+	725.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146009, intron 24 of 52)	intron (NM_146009, intron 24 of 52)	32570.0	NM_146009	216274.0	Mm.229114	NM_146009	ENSMUSG00000019971	Cep290	BC004690|Nphp6|b2b1454Clo|b2b1752Clo	centrosomal protein 290	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-19826791-2	chr17	19826691	19826891	+	577.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4B|LINE|L1	53428.0	NM_001104565	627636.0	Mm.469855	NM_001104565	ENSMUSG00000091771	Vmn2r103	EG627636|Vmn103	vomeronasal 2, receptor 103	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85351170-2	chr12	85351070	85351270	+	602.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026775, intron 2 of 4)	intron (NM_026775, intron 2 of 4)	-11808.0	NM_145138	217718.0	Mm.29071	NM_145138	ENSMUSG00000034290	Nek9	C130021H08Rik	NIMA (never in mitosis gene a)-related expressed kinase 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-129548244-4	chr6	129548187	129548387	+	915.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	-15003.0	NR_045270	100504641.0	Mm.398286	NR_045270	ENSMUSG00000097675	1700101I11Rik	-	RIKEN cDNA 1700101I11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-82770670-2	chr6	82770570	82770770	+	888.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_013820, intron 1 of 17)	ID_B1|SINE|B4	3784.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-40742217-1	chr13	40742117	40742317	+	623.0	f1_c57bl6.idr	Intergenic	Intergenic	-7297.0	NM_001301674	21418.0	Mm.85544	NM_011547	ENSMUSG00000021359	Tfap2a	AP-2|AP2alpha|Ap-2 (a)|Ap2|Ap2tf|Tcfap2a	transcription factor AP-2, alpha	protein-coding	0.87057757846204	1.25740365005689	0.268900622565739	0.262441658004007	0.678971677499004	0.279061561006758	0.270738124662033	0.449564937533231	-1.7765206119443	0.34663707878057	1
Merged-chr2-104690916-4	chr2	104690818	104691018	+	930.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177190, intron 5 of 9)	MTC|LTR|ERVL-MaLR	21244.0	NM_177190	320554.0	Mm.249065	NM_177190	ENSMUSG00000027175	Tcp11l1	C130096D04Rik	t-complex 11 like 1	protein-coding	2.05087730244559	1.46504465072936	1.61003600616003	2.06738483935646	2.06780375292476	1.6694800086134	2.24201593243333	1.57819173085718	0.261467119996632	0.794287834808344	0.998431161219273
Merged-chr2-148522251-4	chr2	148522139	148522339	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-78704.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-117358459-2	chr5	117358359	117358559	+	902.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021539, intron 1 of 8)	intron (NM_021539, intron 1 of 8)	1154.0	NM_021539	59043.0	Mm.28489	NM_021539	ENSMUSG00000029364	Wsb2	AA673511|Swip2|WSB-2	WD repeat and SOCS box-containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-41536040-2	chr5	41535940	41536140	+	739.625	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	171651.0	NM_001310592	100972.0	Mm.41555	NM_027295	ENSMUSG00000029128	Rab28	2700023P08Rik|AW496496	RAB28, member RAS oncogene family	protein-coding	-0.969985568140653	-0.954926458483333	-0.964952254768003	-0.678199237426671	-0.969520782243338	-0.952468414702252	-0.792449051169095	-0.674034068908292	0.593485790233109	0.842311073572557	1
Merged-chr17-24351969-4	chr17	24351874	24352074	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013855)	promoter-TSS (NM_013855)	-49.0	NM_013855	27410.0	Mm.239470	NM_013855	ENSMUSG00000024130	Abca3	1810036E22Rik|ABC-C|Abc3	ATP-binding cassette, sub-family A (ABC1), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-134569324-4	chr5	134569146	134569346	+	731.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2830.0	NR_106087	102465708.0		NR_106087	ENSMUSG00000106323	Mir7228	mmu-mir-7228	microRNA 7228	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-37797775-2	chr13	37797673	37797873	+	644.0	f0_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28265.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0.360705800611443	0.620527719175189	-0.0154390069187723	-0.0199231447915089	-0.0262772263237046	0.631893836322262	-0.0141589121235714	-0.0191390614541224	-0.577852670584304	0.796645186275035	1
Merged-chr3-88623548-4	chr3	88623439	88623639	+	859.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198913, intron 1 of 21)	intron (NM_001198913, intron 1 of 21)	2145.0	NM_001198912	16800.0	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-53379877-4	chr10	53379776	53379976	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001204983)	promoter-TSS (NM_001204983)	-25.0	NM_001204983	100038725.0	Mm.441403	NM_001204983	ENSMUSG00000038594	Cep85l	Gm9766	centrosomal protein 85-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-34278257-2	chr5	34278157	34278357	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001015039, intron 1 of 12)	MTD|LTR|ERVL-MaLR	10067.0	NM_001015039	231125.0	Mm.113388	NM_001015039	ENSMUSG00000037224	Zfyve28	9630058O20Rik|Gm146|mKIAA1643	zinc finger, FYVE domain containing 28	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-34966346-4	chr6	34966247	34966447	+	918.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025573, intron 2 of 7)	intron (NM_001025573, intron 2 of 7)	11652.0	NM_001025573	243753.0	Mm.440221	NM_001025573	ENSMUSG00000029847	Slc23a4	2010107G12Rik|Gm468	solute carrier family 23 member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-4653345-2	chr7	4653245	4653445	+	681.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172894, intron 1 of 23)	intron (NM_172894, intron 1 of 23)	5605.0	NM_172894	243819.0	Mm.258670	NM_172894	ENSMUSG00000052296	Ppp6r1	2010309P17Rik|AI836219|B430201G11Rik|D030074N20Rik|Pp6r1|Saps1|mKIAA1115	protein phosphatase 6, regulatory subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-55550964-4	chr15	55550897	55551097	+	652.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026759, intron 2 of 6)	intron (NM_026759, intron 2 of 6)	6315.0	NM_026759	68537.0	Mm.236795	NM_026759	ENSMUSG00000022370	Mrpl13	1110002D09Rik	mitochondrial ribosomal protein L13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-84611789-2	chr12	84611689	84611889	+	787.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_008992, intron 6 of 18)	intron (NM_008992, intron 6 of 18)	5677.0	NM_008992	19300.0	Mm.229109	NM_008992	ENSMUSG00000021240	Abcd4	P69r|P70R|Pxmp1l	ATP-binding cassette, sub-family D (ALD), member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-54306650-2	chr13	54306550	54306750	+	578.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-64699.0	NM_009946	12890.0	Mm.268902	NM_009946	ENSMUSG00000025867	Cplx2	921-L|AI413745|AW492120|Gm34843	complexin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-121758526-1	chr2	121758426	121758626	+	579.0	f1_balb.idr	intron (NM_001360084, intron 1 of 13)	intron (NM_001360084, intron 1 of 13)	48531.0	NM_001360084	228564.0	Mm.121514	NM_172673	ENSMUSG00000027238	Frmd5	1500032A09Rik|A930004K21Rik|R75430	FERM domain containing 5	protein-coding	1.59555561589906	1.00123160426405	1.42786856245105	1.19354662623017	1.32504312633892	2.195821201277	1.43950672641144	2.62264793898228	2.0553490014817	0.072796030018966	0.40749926975158
Merged-chr8-57512461-3	chr8	57512366	57512566	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008252, intron 1 of 4)	CpG	623.0	NM_008252	97165.0	Mm.276881	NM_008252	ENSMUSG00000054717	Hmgb2	C80539|HMG-2|Hmg2	high mobility group box 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-47374550-4	chr14	47374430	47374630	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145953, intron 1 of 5)	intron (NM_001145953, intron 1 of 5)	670.0	NM_001145953	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-17607360-3	chr1	17607243	17607443	+	873.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053191, intron 2 of 5)	intron (NM_053191, intron 2 of 5)	5442.0	NM_053191	94227.0	Mm.442452	NM_053191	ENSMUSG00000067780	Pi15	P24TI|P25TI|PI-15|SugarCrisp	peptidase inhibitor 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-154081129-2	chr1	154081029	154081229	+	712.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-120058.0	NM_001204908	100503355.0	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	Gm10178|Gm203	zinc finger protein 648	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-35770343-4	chr16	35770229	35770429	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175111)	promoter-TSS (NM_175111)	-57.0	NR_152314	66667.0	Mm.45272	NM_175111	ENSMUSG00000022849	Hspbap1	3830421G21Rik	Hspb associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-8468973-1	chr17	8468873	8469073	+	704.333313	f0_balb.idr	Intergenic	Intergenic	34550.0	NM_009309	20997.0	Mm.913	NM_009309	ENSMUSG00000062327	T	Bra|D17Mit170|Low|Lr|T1|Tbxt|Tl2|Tl3|cou|me75	brachyury, T-box transcription factor T	protein-coding	-1.28025741253843	-1.25296595648262	-1.2630259255951	-1.2712894837512	-1.0104656993792	-1.25078591920978	-1.26074856909628	-0.971423026503385	2.3133467066417	0.490836719666531	1
Merged-chr6-38669732-2	chr6	38669632	38669832	+	789.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001101507, intron 1 of 4)	B3A|SINE|B2	6663.0	NM_001101507	665180.0	Mm.349066	NM_001101507	ENSMUSG00000079598	Clec2l	AI414054|AW122724|Gm1064	C-type lectin domain family 2, member L	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-110890854-2	chr9	110890753	110890953	+	667.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_146228, exon 15 of 27)	exon (NM_146228, exon 15 of 27)	10531.0	NM_001146060	235633.0	Mm.86338	NM_146228	ENSMUSG00000044037	Als2cl	79H19D|79H19E|BC022645|D930044G19Rik|mRn.49018	ALS2 C-terminal like	protein-coding	1.3828904345499	0.724039468553979	0.708720876412342	1.75860887707864	0.679168009464726	1.61152174355386	1.65294716311175	0.698771950059967	0.0876350261634877	0.955315551083752	0.998431161219273
Merged-chr1-164138837-4	chr1	164138735	164138935	+	967.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011347, intron 9 of 15)	intron (NM_011347, intron 9 of 15)	-13000.0	NM_007976	14067.0	Mm.12900	NM_007976	ENSMUSG00000026579	F5	AI173222|Cf-5|Cf5	coagulation factor V	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-25587957-4	chr2	25587850	25588050	+	968.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024616, intron 8 of 14)	intron (NM_001024616, intron 8 of 14)	-7851.0	NM_001005424	381353.0	Mm.379511	NM_001005424	ENSMUSG00000029419	Gm996	Ajm1	predicted gene 996	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-61265510-4	chr19	61265418	61265618	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37100.0	NM_009970	12982.0	Mm.287228	NM_009970	ENSMUSG00000059326	Csf2ra	CD116|Csfgmra|GM-CSF-Ra|GM-CSFR	colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128536478-4	chr10	128536369	128536569	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10610.0	NM_011843	23943.0	Mm.66056	NM_011843	ENSMUSG00000025366	Esyt1	Fam62a|Mbc2|vp115	extended synaptotagmin-like protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-185497509-2	chr1	185497409	185497609	+	813.599976	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033600, exon 1 of 1)	non-coding (NR_033600, exon 1 of 1)	203.0	NR_033600	114668.0	Mm.379303	NR_033600	ENSMUSG00000102185	5033404E19Rik	-	NSA2 ribosome biogenesis homolog pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-144301694-4	chr1	144301584	144301784	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2c|LINE|L2	-52580.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-94269380-1	chr6	94269280	94269480	+	808.0	f0_balb.idr	intron (NM_001029850, intron 1 of 23)	MTC|LTR|ERVL-MaLR	14537.0	NM_010367	14924.0	Mm.217216	NM_010367	ENSMUSG00000045095	Magi1	AIP3|BAP1|Baiap1|Gukmi1|MAGI1c|Magi-1|TNRC19|WWP3|mKIAA4129	membrane associated guanylate kinase, WW and PDZ domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-27385268-3	chr16	27385142	27385342	+	760.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3714.0	NM_001025615	67501.0	Mm.258985	NM_026202	ENSMUSG00000038127	Ccdc50	C3orf6	coiled-coil domain containing 50	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81157242-2	chr10	81157142	81157342	+	596.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_021501, exon 6 of 11)	exon (NM_021501, exon 6 of 11)	10478.0	NM_021501	59004.0	Mm.34428	NM_021501	ENSMUSG00000004934	Pias4	PIASY|Pias-gamma|Piasg	protein inhibitor of activated STAT 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-98779270-3	chr12	98779169	98779369	+	832.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029334, intron 11 of 16)	intron (NM_029334, intron 11 of 16)	8247.0	NM_001160108	75553.0	Mm.25549	NM_029334	ENSMUSG00000021012	Zc3h14	1010001P15Rik|1700016A15Rik|2700069A02Rik|AU014748	zinc finger CCCH type containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-122053166-2	chr10	122053066	122053266	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5851.0	NM_001081037	117600.0	Mm.288698	NM_001081037	ENSMUSG00000020121	Srgap1	4930572H05Rik|Arhgap13	SLIT-ROBO Rho GTPase activating protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-4833189-4	chr11	4833068	4833268	+	916.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252253)	promoter-TSS (NM_001252253)	-33.0	NM_001252253	18016.0	Mm.297109	NM_010898	ENSMUSG00000009073	Nf2	merlin	neurofibromin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69064969-2	chr11	69064869	69065069	+	730.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F2|SINE|Alu	5194.0	NM_028005	71923.0	Mm.340257	NM_028005	ENSMUSG00000045176	Borcs6	2310047M10Rik	BLOC-1 related complex subunit 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-23807805-4	chr18	23807713	23807913	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153058, intron 1 of 6)	intron (NM_153058, intron 1 of 6)	3843.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-101251758-4	chr9	101251627	101251827	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001161362, exon 1 of 14)	5' UTR (NM_001161362, exon 1 of 14)	105.0	NM_001161362	235542.0	Mm.335386	NM_172144	ENSMUSG00000043154	Ppp2r3a	3222402P14Rik|A730042E07	protein phosphatase 2, regulatory subunit B'', alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-58585560-4	chr4	58585475	58585675	+	841.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32084.0	NM_010336	14745.0	Mm.4772	NM_010336	ENSMUSG00000038668	Lpar1	AI326300|Edg2|Gpcr26|Kdt2|lpA1|vzg-1	lysophosphatidic acid receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-104995791-4	chr14	104995708	104995908	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16A1|LTR|ERVL	118868.0	NR_040628	100502987.0	Mm.124957	NR_040628		Gm17066	-	predicted gene 17066	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-79883884-4	chr10	79883781	79883981	+	956.158325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011178)	TTS (NM_011178)	-2431.0	NM_015779	50701.0	Mm.262194	NM_015779	ENSMUSG00000020125	Elane	Ela2|F430011M15Rik|NE	elastase, neutrophil expressed	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99549905-4	chr7	99549764	99549964	+	949.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178220, intron 1 of 14)	intron (NM_178220, intron 1 of 14)	-2405.0	NR_029760	723840.0		NR_029760	ENSMUSG00000065571	Mir326	Mirn326|mir-326|mmu-mir-326	microRNA 326	ncRNA	-1.53624506061781	-1.50498120743042	-1.36567403739569	-1.52220181915623	-1.2509067664531	-1.50293238927041	-1.51229537506134	-1.5208116794288	0.640753741356348	0.855918148133185	1
Merged-chr2-130295690-3	chr2	130295570	130295770	+	983.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001110513)	promoter-TSS (NM_001110513)	-269.0	NM_001110513	228598.0	Mm.32582	NM_152993	ENSMUSG00000053552	Ebf4	Ebf3|O/E-4|Olf-1	early B cell factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139018409-2	chr5	139018309	139018509	+	978.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001253890, exon 11 of 11)	3' UTR (NM_001253890, exon 11 of 11)	-23456.0	NM_008808	18590.0	Mm.2675	NM_008808	ENSMUSG00000025856	Pdgfa	-	platelet derived growth factor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-136136271-2	chr4	136136171	136136371	+	652.549988	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7551.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-77686051-4	chr11	77685961	77686161	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024205)	promoter-TSS (NM_001024205)	-78.0	NM_001024205	68564.0	Mm.428996	NM_001024205	ENSMUSG00000037857	Nufip2	1110001M19Rik|9530056D24Rik|AI256692|AI461731|PIG1|mKIAA1321	nuclear fragile X mental retardation protein interacting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-62553266-2	chr11	62553162	62553362	+	732.0	f0_balb.idr|f0_c57.idr	TTS (NR_002875)	TTS (NR_002875)	1531.0	NM_001313984	22187.0	Mm.371592	NM_011664	ENSMUSG00000019505	Ubb	AL033289|Rps27a|Uba52|Ubb2|Ubc	ubiquitin B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-71476850-3	chr6	71476732	71476932	+	739.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17045.0	NM_009543	22644.0	Mm.422969	NM_009543	ENSMUSG00000052656	Rnf103	AW146237|AW212918|Zfp103|kf-1	ring finger protein 103	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-107271028-4	chr8	107270915	107271115	+	996.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_039557, intron 2 of 3).3	intron (NR_039557, intron 2 of 3).3	14851.0	NR_039557	100628577.0		NR_039557	ENSMUSG00000093061	Mir5098	mmu-mir-5098|mu-mir-5098	microRNA 5098	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-71896094-4	chr9	71896012	71896212	+	951.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253864)	promoter-TSS (NM_001253864)	-16.0	NM_001253863	21406.0	Mm.171615	NM_011544	ENSMUSG00000032228	Tcf12	A130037E08Rik|ALF1|HEB|HEBAlt|HTF-4|HTF4|ME1|REB|bHLHb20	transcription factor 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-64060529-2	chr9	64060429	64060629	+	682.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10700.0	NR_040713	68697.0	Mm.491042	NR_040713	ENSMUSG00000097036	1110036E04Rik	-	RIKEN cDNA 1110036E04 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-132199569-2	chr1	132199469	132199669	+	788.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033250, intron 1 of 3)	(TTTTTG)n|Simple_repeat|Simple_repeat	1481.0	NR_029777	723818.0		NR_029777	ENSMUSG00000065435	Mir135b	Mirn135b|mir-135b	microRNA 135b	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-43463117-2	chr7	43463017	43463217	+	709.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290316)	promoter-TSS (NM_001290316)	-116.0	NM_001290316	75690.0	Mm.30200	NM_001290316	ENSMUSG00000070604	Vsig10l	-	V-set and immunoglobulin domain containing 10 like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-77758535-3	chr18	77758434	77758634	+	859.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357531, intron 9 of 10)	intron (NM_001357531, intron 9 of 10)	9265.0	NM_146089	225745.0	Mm.39293	NM_146089	ENSMUSG00000041840	Haus1	BC024400|Ccdc5|HEI-C	HAUS augmin-like complex, subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-89874737-3	chr9	89874661	89874861	+	846.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2B1|LTR|ERVL	-35014.0	NM_001357744	19417.0	Mm.44561	NM_011245	ENSMUSG00000032356	Rasgrf1	AI844718|CDC25|CDC25Mm|Gnrp|Grf1|Grfbeta|P190-A|Ras-GRF1|p190|p190RhoGEF	RAS protein-specific guanine nucleotide-releasing factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-106518141-1	chr14	106518041	106518241	+	824.0	f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-31621.0	NR_045938	73631.0	Mm.48862	NR_045938	ENSMUSG00000099794	1700128A07Rik	-	RIKEN cDNA 1700128A07 gene	ncRNA	0.454038718995545	1.14898779264174	0.17820836541837	0.172456584728009	0.461343964621127	0.187277214211478	0.179846550162968	0.638812559777152	-1.07886295682707	0.577220424186966	1
Merged-chr17-47904708-1	chr17	47904608	47904808	+	849.0	f1_c57bl6.idr	intron (NM_028767, intron 1 of 16)	intron (NM_028767, intron 1 of 16)	19924.0	NM_028767	74123.0	Mm.240062	NM_028767	ENSMUSG00000023991	Foxp4	1200010K03Rik|2310007G05Rik|mFKHLA	forkhead box P4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45462062-2	chr7	45461966	45462166	+	867.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_007527, intron 5 of 5)	PB1D10|SINE|Alu	-2180.0	NM_010240	14325.0	Mm.30357	NM_010240	ENSMUSG00000050708	Ftl1	Ftl|Ftl-1|L-ferritin	ferritin light polypeptide 1	protein-coding	2.48384880160026	3.27174204083874	1.43994992743005	2.82546378849683	2.86380437163674	3.29574106193755	1.45083912367042	3.01153850566747	0.280643971641045	0.754387496670821	0.998431161219273
Merged-chr10-13501138-4	chr10	13501041	13501241	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001330198, exon 1 of 8)	5' UTR (NM_001330198, exon 1 of 8)	113.0	NM_025799	66848.0	Mm.26625	NM_025799	ENSMUSG00000019810	Fuca2	0610025O11Rik|5530401P20Rik	fucosidase, alpha-L- 2, plasma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95230475-4	chr3	95230377	95230577	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038708, intron 1 of 4)	intron (NM_001038708, intron 1 of 4)	1534.0	NM_001038708	57912.0	Mm.28189	NM_172395	ENSMUSG00000046722	Cdc42se1	1300002M12Rik|AW558204|Cdcse1|SCIP1|Spec1	CDC42 small effector 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-44054362-1	chr17	44054262	44054462	+	567.0	f1_balb.idr	Intergenic	Lx7|LINE|L1	-24440.0	NM_001168620	83965.0	Mm.30145	NM_032003	ENSMUSG00000023960	Enpp5	AW061004|D17Abb1e|E-NPP 5	ectonucleotide pyrophosphatase/phosphodiesterase 5	protein-coding	1.30191886400896	1.99448383500474	1.14949163989453	1.25860879889396	1.31438902241465	1.01040315255847	0.761196709829095	0.748713632706496	-2.00203969769517	0.144812766119083	0.594614499622435
Merged-chr14-102070139-2	chr14	102070039	102070239	+	808.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17B|LTR|ERVK	229516.0	NM_001347628	380928.0	Mm.218981	NM_201529	ENSMUSG00000033060	Lmo7	C78582|FBXO20|Gm914|mKIAA0858	LIM domain only 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72347584-6	chr6	72347469	72347669	+	969.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026696, intron 1 of 3)	CpG	252.0	NM_026696	68364.0	Mm.52711	NM_026696	ENSMUSG00000058706	0610030E20Rik	1500031N04Rik|2810411C16Rik|AI461894	RIKEN cDNA 0610030E20 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120571357-1	chr8	120571257	120571457	+	563.0	f1_balb.idr	intron (NM_001145896, intron 9 of 15)	intron (NM_001145896, intron 9 of 15)	17718.0	NM_178856	272551.0	Mm.275910	NM_178856	ENSMUSG00000031821	Gins2	2210013I18Rik|4833427B12Rik|AI323585|Pfs2	GINS complex subunit 2 (Psf2 homolog)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80738926-2	chr10	80738826	80739026	+	991.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007460, intron 1 of 30)	B2_Mm2|SINE|B2	3349.0	NM_007460	11776.0	Mm.27082	NM_007460	ENSMUSG00000020198	Ap3d1	AA407035|Ap3d|Bolvr|mBLVR1|mh|mocha	adaptor-related protein complex 3, delta 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-25367535-2	chr10	25367435	25367635	+	815.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358754, intron 1 of 16)	ID_B1|SINE|B4	7737.0	NM_001358751	13822.0	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101317011-2	chr7	101316911	101317111	+	603.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360460)	promoter-TSS (NM_001360460)	-75.0	NM_001360460	56018.0	Mm.28896	NM_019990	ENSMUSG00000030688	Stard10	AV048538|CGI-52|NY-C0-28|PC-TP2|PCTP2|Pctpl|Sdccag28|SdccagG28|TISP-81	START domain containing 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-138265631-2	chr2	138265531	138265731	+	785.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025431, intron 1 of 4)	intron (NM_001025431, intron 1 of 4)	9047.0	NM_001025431	228662.0	Mm.153405	NM_145534	ENSMUSG00000062098	Btbd3	mKIAA0952	BTB (POZ) domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-12108553-4	chr2	12108475	12108675	+	915.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_138462, exon 31 of 31)	non-coding (NR_138462, exon 31 of 31)	-192671.0	NR_040353	338535.0	Mm.483275	NR_040353	ENSMUSG00000086843	E030013I19Rik	-	RIKEN cDNA E030013I19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-134632459-4	chr4	134632349	134632549	+	948.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207237, intron 2 of 11)	intron (NM_207237, intron 2 of 11)	-64598.0	NR_105829	102465216.0		NR_105829	ENSMUSG00000099289	Mir6403	Gm27992|mmu-mir-6403	microRNA 6403	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83868113-4	chr6	83868014	83868214	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36373.0	NM_146169	232164.0	Mm.404420	NM_146169	ENSMUSG00000045896	Paip2b	-	poly(A) binding protein interacting protein 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-105523446-2	chr2	105523346	105523546	+	595.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-124127.0	NM_009037	19672.0	Mm.4876	NM_009037	ENSMUSG00000005973	Rcn1	Rcn	reticulocalbin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-38782892-4	chr6	38782798	38782998	+	724.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010433, intron 2 of 14)	intron (NM_010433, intron 2 of 14)	54413.0	NM_001136065	15258.0	Mm.23790	NM_010433	ENSMUSG00000061436	Hipk2	1110014O20Rik|B230339E18Rik|Stank	homeodomain interacting protein kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-87850751-2	chr1	87850651	87850851	+	748.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	-2536.0	NM_177646	227333.0	Mm.277217	NM_177646	ENSMUSG00000070738	Dgkd	AI841987|D330025K09|DGKdelta|dgkd-2	diacylglycerol kinase, delta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-57147023-2	chr9	57146923	57147123	+	781.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001357409, exon 2 of 11)	exon (NM_001357409, exon 2 of 11)	1282.0	NM_028347	72774.0	Mm.35749	NM_028347	ENSMUSG00000032298	Neil1	2810450N13Rik|NEH1|Nei1	nei endonuclease VIII-like 1 (E. coli)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-44268433-4	chr10	44268351	44268551	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_053069, exon 1 of 8)	5' UTR (NM_053069, exon 1 of 8)	112.0	NM_001358596	11793.0	Mm.22264	NM_053069	ENSMUSG00000038160	Atg5	2010107M05Rik|3110067M24Rik|AW319544|Apg5l|Atg5l|C88337|Paddy	autophagy related 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-81338099-2	chr7	81337999	81338199	+	683.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	7135.0	NM_009092	20068.0	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-86359521-4	chr1	86359442	86359642	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015507)	promoter-TSS (NR_015507)	-32.0	NR_015507	319336.0	Mm.389155	NR_015507	ENSMUSG00000073627	C130036L24Rik	-	RIKEN cDNA C130036L24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85641105-2	chr12	85641005	85641205	+	670.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41087.0	NM_001205053	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-71735745-4	chr1	71735653	71735853	+	946.229126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	82418.0	NR_040308	100042814.0	Mm.405775	NR_040308	ENSMUSG00000073652	Apol7d	Gm15456	apolipoprotein L 7d	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5469683-2	chr19	5469583	5469783	+	706.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1176.0	NM_009985	13041.0	Mm.113590	NM_009985	ENSMUSG00000024910	Ctsw	lymphopain	cathepsin W	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-49630044-2	chr4	49629944	49630144	+	763.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2B2|LTR|ERVL	-2016.0	NM_001163263	109331.0	Mm.24765	NM_182999	ENSMUSG00000028309	Rnf20	4833430L21Rik|AW540162|C79397|mKIAA4116	ring finger protein 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-53607665-2	chr8	53607568	53607768	+	818.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_146208, intron 4 of 9)	MTB|LTR|ERVL-MaLR	31397.0	NM_146208	234258.0	Mm.281749	NM_146208	ENSMUSG00000039396	Neil3	AI449477|BC034753|C85903	nei like 3 (E. coli)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-8787820-4	chr11	8787717	8787917	+	964.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-123282.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	1.98262997881276	2.21753122732678	2.14415298638084	2.08536008775081	2.4276915173073	1.95466464965283	1.30410626042794	2.09578295938837	-0.225728732098221	0.814007148311123	0.998431161219273
Merged-chr14-73334049-4	chr14	73333946	73334146	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVL-E-int|LTR|ERVL	-8224.0	NM_009029	19645.0	Mm.273862	NM_009029	ENSMUSG00000022105	Rb1	Rb|Rb-1|pRb|pp105	RB transcriptional corepressor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-180043879-4	chr2	180043778	180043978	+	956.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178750, intron 1 of 10)	intron (NM_178750, intron 1 of 10)	1395.0	NM_178750	269397.0	Mm.63068	NM_178750	ENSMUSG00000039086	Ss18l1	A230053O16Rik|CREST	SS18, nBAF chromatin remodeling complex subunit like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-85326138-4	chr9	85326040	85326240	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160379, intron 2 of 2)	AT_rich|Low_complexity|Low_complexity	984.0	NM_001160378	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	1.4762849805767	3.73576048671174	3.0343138839298	3.22357920093429	2.58969600408909	3.76214364962253	3.34366222827142	3.39590560786952	0.392219780169734	0.593555889002861	0.9706660979479
Merged-chr10-82813332-2	chr10	82813232	82813432	+	640.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_038042, intron 1 of 2)	B1_Mus2|SINE|Alu	1209.0	NR_038042	70003.0	Mm.48789	NR_038042	ENSMUSG00000056821	1700028I16Rik	-	RIKEN cDNA 1700028I16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88150181-1	chr3	88150081	88150281	+	551.0	f1_balb.idr	intron (NM_001310593, intron 1 of 10)	intron (NM_001310593, intron 1 of 10)	7809.0	NM_133665	17261.0	Mm.28184	NM_133665	ENSMUSG00000001419	Mef2d	C80750	myocyte enhancer factor 2D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-72159552-2	chr16	72159452	72159652	+	739.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	74775.0	NR_131116	319533.0	Mm.373754	NR_131115		8030451O07Rik	-	RIKEN cDNA 8030451O07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-42866388-3	chr13	42866291	42866491	+	927.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001302636, exon 1 of 13)	5' UTR (NM_001302636, exon 1 of 13)	144.0	NM_001302636	218194.0	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-11404665-4	chr19	11404555	11404755	+	827.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3006.0	NM_029499	64380.0	Mm.440715	NM_029499	ENSMUSG00000024675	Ms4a4c	5830413L19Rik|AI449185|Ms4a9	membrane-spanning 4-domains, subfamily A, member 4C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131094627-3	chr1	131094519	131094719	+	704.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008551, intron 1 of 9)	MIR3|SINE|MIR	3224.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150909900-4	chr4	150909793	150909993	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020569)	promoter-TSS (NM_020569)	28.0	NM_020569	57320.0	Mm.277349	NM_020569	ENSMUSG00000028964	Park7	DJ-1|Dj1	Parkinson disease (autosomal recessive, early onset) 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-45035492-2	chr2	45035392	45035592	+	917.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355291, intron 2 of 9)	intron (NM_001355291, intron 2 of 9)	-12315.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-28481994-2	chr6	28481895	28482095	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019776, intron 1 of 23)	intron (NM_019776, intron 1 of 23)	1647.0	NM_019776	56463.0	Mm.439987	NM_019776	ENSMUSG00000001424	Snd1	AL033314|Tudor-SN	staphylococcal nuclease and tudor domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88491368-4	chr3	88491280	88491480	+	997.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001002011, intron 1 of 11)	intron (NM_001002011, intron 1 of 11)	1932.0	NM_019390	16905.0	Mm.243014	NM_019390	ENSMUSG00000028063	Lmna	Dhe	lamin A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-4193808-1	chr11	4193708	4193908	+	556.0	f1_balb.idr	intron (NM_134023, intron 1 of 8)	intron (NM_134023, intron 1 of 8)	6975.0	NM_134023	103724.0	Mm.28140	NM_134023	ENSMUSG00000034412	Tbc1d10a	AI447804|EPI64|Tbc1d10|mFLJ00288	TBC1 domain family, member 10a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-79180368-2	chr3	79180268	79180468	+	943.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32551.0	NR_045502	70924.0	Mm.444622	NR_045502	ENSMUSG00000104585	4921511C10Rik	-	RIKEN cDNA 4921511C10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128714840-2	chr2	128714740	128714940	+	997.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 1 of 18)	intron (NM_008587, intron 1 of 18)	15925.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	-1.18302134691506	-1.15893813914636	-1.16954601498264	-1.01688116837571	-0.706931804553649	-1.15663936820083	-1.16714462441132	-1.17669990531683	1.47460249523148	0.657520571745587	1
Merged-chr4-63370319-2	chr4	63370219	63370419	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001045514, intron 21 of 21)	intron (NM_001045514, intron 21 of 21)	7870.0	NM_011016	18406.0	Mm.14173	NM_011016	ENSMUSG00000061540	Orm2	Agp1|Orm-2	orosomucoid 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-162646483-3	chr1	162646428	162646628	+	848.805542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001177581)	TTS (NM_001177581)	7378.0	NM_010865	17926.0	Mm.10694	NM_010865	ENSMUSG00000026697	Myoc	AI957332|GLC1A|TIGR	myocilin	protein-coding	3.5762781375087	3.35384620037292	3.62297230237746	2.84889421341475	2.71861990918987	3.62820135292561	3.43475068242291	1.59996278458045	-0.538641103263655	0.445506853977688	0.913093059349143
Merged-chr12-84111010-3	chr12	84110914	84111114	+	909.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3314.0	NM_028821	105000.0	Mm.101525	NM_028821	ENSMUSG00000042523	Dnal1	1700010H15Rik|AW121714|Dnalc1|E330027P08Rik	dynein, axonemal, light chain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83717242-4	chr11	83717154	83717354	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8250.0	NM_007969	14038.0	Mm.1650	NM_007969	ENSMUSG00000000983	Wfdc18	Expi|Kal1|WDNM1	WAP four-disulfide core domain 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-68768794-2	chr6	68768694	68768894	+	943.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	558380.0	NR_004434	19783.0		NR_004434	ENSMUSG00000106222	Rprl1	Rmrp2|Rpr|Rprh2	ribonuclease P RNA-like 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-122819778-2	chr10	122819678	122819878	+	839.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110218, intron 4 of 9)	intron (NM_001110218, intron 4 of 9)	140463.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	-1.58994551673671	-1.55912852307891	-1.56844783632235	-1.57610299769523	-1.18549093183599	-1.55710898902261	-1.56633814807757	-1.57473272746952	1.78703309985663	0.610309988231842	1
Merged-chr7-90030908-5	chr7	90030827	90031027	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110365, intron 1 of 5)	intron (NR_110365, intron 1 of 5)	1768.0	NR_110364	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	3.52418982909346	4.27587990679004	4.19671020441129	3.47864349889058	3.48130671047503	2.88092321229426	4.42730241797491	4.39221983773256	0.04860842283245	0.927597540042661	0.998431161219273
Merged-chr6-34873967-2	chr6	34873867	34874067	+	675.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001347101, exon 4 of 4)	3' UTR (NM_001347101, exon 4 of 4)	4098.0	NM_199145	78412.0	Mm.248440	NM_199145	ENSMUSG00000046806	3110062M04Rik	AL023049|Cyren|Mri	RIKEN cDNA 3110062M04 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-102251515-2	chr7	102251415	102251615	+	881.6666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1397.0	NM_019566	56212.0	Mm.259795	NM_019566	ENSMUSG00000073982	Rhog	2810426G09Rik|Arhg|Sid10750	ras homolog family member G	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46609812-4	chr19	46609719	46609919	+	986.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177812, intron 2 of 4)	intron (NM_001177812, intron 2 of 4)	10713.0	NM_146099	226178.0	Mm.329895	NM_146099	ENSMUSG00000047731	Wbp1l	D19Wsu162e|Opal1	WW domain binding protein 1 like	protein-coding	3.81589926690882	2.45398549538881	4.41919373812746	4.11825021947205	4.22078475213638	3.80270903037773	3.67735343700822	3.64231345137806	-0.0339570723477267	0.950183398396381	0.998431161219273
Merged-chr7-45068072-4	chr7	45067964	45068164	+	944.9249880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163684, intron 1 of 8)	B2_Mm2|SINE|B2	5635.0	NM_025533	66394.0	Mm.272139	NM_025533	ENSMUSG00000003421	Nosip	2310061K06Rik|CGI-25	nitric oxide synthase interacting protein	protein-coding	2.38969323366258	3.54790635072866	3.35300642450293	2.0167740914425	3.18756020168426	1.62882454998598	3.72250845567346	3.77683822311022	0.538970558214722	0.490730702116951	0.934345795476137
Merged-chr1-152720818-4	chr1	152720712	152720912	+	775.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346117, intron 1 of 18)	intron (NM_001346117, intron 1 of 18)	-29739.0	NM_001081197	71281.0	Mm.158650	NM_001081197	ENSMUSG00000055547	Apobec4	4933431M11Rik	apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 4 (putative)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-48189519-2	chr14	48189410	48189610	+	729.166626	f0_balb.idr|f1_balb.idr	intron (NM_033602, intron 2 of 5)	intron (NM_033602, intron 2 of 5)	-9206.0	NR_003630	624367.0	Mm.445185	NM_001037921	ENSMUSG00000021846	Gm6498	EG624367	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	1.15520558758234	2.36843415615441	1.48555988741996	2.09986799768703	2.00447658411065	1.95724821003468	3.03395901996084	2.22857699927617	1.23854214278055	0.213266081387468	0.703038353542171
Merged-chr4-128665284-2	chr4	128665184	128665384	+	732.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001195130, intron 1 of 14)	MIRc|SINE|MIR	10582.0	NM_001195130	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171366099-3	chr1	171365995	171366195	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4078.0	NM_027893	71740.0	Mm.263414	NM_027893	ENSMUSG00000006411	Nectin4	1200017F15Rik|Prr4|Pvrl4	nectin cell adhesion molecule 4	protein-coding	5.15782982154841	5.26281217813029	4.88686786329473	5.01527483013142	1.49054099607026	3.98401692179656	2.99993097283945	1.62307581161493	-2.89707261671991	0.0201620109900976	0.180166689070897
Merged-chr1-162547839-2	chr1	162547688	162547888	+	994.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_144877, intron 1 of 7)	intron (NM_144877, intron 1 of 7)	557.0	NM_144877	71449.0	Mm.270569	NM_144877	ENSMUSG00000026694	Mettl13	5630401D24Rik	methyltransferase like 13	protein-coding	-1.50561175621786	-1.47331375025452	-1.02203377115094	-1.49110398925286	-1.50334449591826	-1.47119716082604	-1.48086985756939	-1.48966786617048	-2.07776723614574	0.550394407909386	1
Merged-chr15-102075274-2	chr15	102075174	102075374	+	623.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_145625, intron 1 of 14)	intron (NM_145625, intron 1 of 14)	1501.0	NM_145625	75705.0	Mm.290022	NM_145625	ENSMUSG00000058655	Eif4b	2310046H11Rik|AL024095|C85189|Eif4a2	eukaryotic translation initiation factor 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-123850250-4	chr9	123850163	123850363	+	966.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_148925, intron 1 of 18)	intron (NM_148925, intron 1 of 18)	1398.0	NM_148925	17281.0	Mm.252941	NM_148925	ENSMUSG00000025241	Fyco1	2810409M01Rik|Mem2|RUFY3|ZFYVE7	FYVE and coiled-coil domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-27384096-1	chr10	27383996	27384196	+	728.666687	f1_balb.idr	intron (NM_008481, intron 4 of 63)	intron (NM_008481, intron 4 of 63)	-5770.0	NR_131034	75855.0	Mm.402080	NR_131034	ENSMUSG00000101636	4930579H20Rik	-	RIKEN cDNA 4930579H20 gene	ncRNA	2.53187530686631	3.28886956107221	1.41629576961145	2.09899275841125	3.78180544865488	3.6224863924228	3.56782449643166	1.37701885179612	1.41039432458904	0.306096352448881	0.806865344318695
Merged-chr13-63140005-4	chr13	63139909	63140109	+	929.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289926, intron 5 of 15)	intron (NM_001289926, intron 5 of 15)	-100020.0	NR_110520	72061.0	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	2.55917527139422	1.65191370026188	2.43392957949964	1.36987053603647	1.89012769616374	1.99442247369074	1.77980554956989	1.14926930179949	-0.987694158055862	0.35296866617452	0.852914941614096
Merged-chr7-79715762-4	chr7	79715629	79715829	+	971.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1543.0	NM_001291222	16576.0	Mm.101633	NM_010626	ENSMUSG00000050382	Kif7	-	kinesin family member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-105738395-2	chr7	105738295	105738495	+	547.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161724, intron 2 of 12)	intron (NM_001161724, intron 2 of 12)	-1010.0	NM_133951	101867.0	Mm.231400	NM_025897	ENSMUSG00000030888	Rrp8	1500003O22Rik|2900001K19Rik|AW538116	ribosomal RNA processing 8, methyltransferase, homolog (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-75769091-2	chr16	75768991	75769191	+	969.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-2273.0	NM_030201	110920.0	Mm.26704	NM_030201	ENSMUSG00000032932	Hspa13	1600002I10Rik|AV006182|B230217N24Rik|Stch	heat shock protein 70 family, member 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-122029237-3	chr14	122029141	122029341	+	681.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5433.0	NM_001037744	223262.0	Mm.297637	NM_001037744	ENSMUSG00000071229	Timm8a2	-	translocase of inner mitochondrial membrane 8A2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-56652402-3	chr6	56652323	56652523	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	52276.0	NM_025520	66373.0	Mm.25642	NM_025520	ENSMUSG00000091625	Lsm5	2010208O10Rik|2310034K10Rik	LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107549871-2	chr9	107549779	107549979	+	912.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_053253, exon 8 of 12)	exon (NM_053253, exon 8 of 12)	-1676.0	NM_001243748	56289.0	Mm.12091	NM_019713	ENSMUSG00000010067	Rassf1	123F2|AA536941|AU044980|NORE2A|RDA32|REH3P21|Rassf1A|Rassf1B|Rassf1C	Ras association (RalGDS/AF-6) domain family member 1	protein-coding	1.05016288100393	-0.0507496399824398	-0.0576600348287084	0.124863091404724	-0.0707093192398671	-0.0492009857626421	-0.0561301752960483	0.422920654612487	-1.84566754157079	0.40424319099215	1
Merged-chr6-52011782-4	chr6	52011668	52011868	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018773, intron 1 of 12)	intron (NM_018773, intron 1 of 12)	781.0	NM_018773	54353.0	Mm.221479	NM_018773	ENSMUSG00000059182	Skap2	2610021A10Rik|AA960083|BB137539|RA70|SKAP-HOM|Saps|Scap2|mSKAP55R	src family associated phosphoprotein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-36036875-4	chr12	36036791	36036991	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025359, intron 1 of 5)	intron (NM_025359, intron 1 of 5)	5587.0	NM_025359	66109.0	Mm.254663	NM_025359	ENSMUSG00000020577	Tspan13	1100001I23Rik|NET-6|Tm4sf13	tetraspanin 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-75409363-4	chr9	75409222	75409422	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027418)	promoter-TSS (NM_027418)	37.0	NM_027418	50772.0	Mm.480076	NM_015806	ENSMUSG00000042688	Mapk6	2610021I23Rik|D130053K17Rik|Erk3|Mapk4|Mapk63|Prkm4|Prkm6	mitogen-activated protein kinase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-34273651-2	chr5	34273551	34273751	+	726.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001015039, intron 1 of 12)	intron (NM_001015039, intron 1 of 12)	14673.0	NM_001015039	231125.0	Mm.113388	NM_001015039	ENSMUSG00000037224	Zfyve28	9630058O20Rik|Gm146|mKIAA1643	zinc finger, FYVE domain containing 28	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-108845618-2	chr9	108845518	108845718	+	563.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359572, intron 29 of 35)	intron (NM_001359572, intron 29 of 35)	-8425.0	NM_134420	171429.0	Mm.45201	NM_134420	ENSMUSG00000023259	Slc26a6	B930010B04Rik|CFEX|Pat-1|Pat1	solute carrier family 26, member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-80777625-3	chr18	80777532	80777732	+	771.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015805, intron 14 of 28)	intron (NM_015805, intron 14 of 28)	-64561.0	NM_001164110	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-119358909-4	chr13	119358803	119359003	+	935.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001308506, intron 12 of 16)	MTD|LTR|ERVL-MaLR	50108.0	NM_008710	18115.0	Mm.132584	NM_008710	ENSMUSG00000116207	Nnt	4930423F13Rik|AI323702|BB168308	nicotinamide nucleotide transhydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98776010-4	chr11	98775946	98776146	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145434)	promoter-TSS (NM_145434)	-669.0	NM_145434	217166.0	Mm.390397	NM_145434	ENSMUSG00000020889	Nr1d1	A530070C09Rik|R75201	nuclear receptor subfamily 1, group D, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31464485-2	chr14	31464385	31464585	+	735.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-28385.0	NM_011894	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-63196578-2	chr9	63196478	63196678	+	561.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011840, intron 20 of 21)	intron (NM_011840, intron 20 of 21)	-47617.0	NM_001163758	207667.0	Mm.36349	NM_172446	ENSMUSG00000022245	Skor1	AV273001|C230094B15Rik|Corl1|Lbxcor1	SKI family transcriptional corepressor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129371572-2	chr2	129371471	129371671	+	782.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008361)	promoter-TSS (NM_008361)	-432.0	NM_008361	16176.0	Mm.222830	NM_008361	ENSMUSG00000027398	Il1b	IL-1beta|Il-1b	interleukin 1 beta	protein-coding	0.961044162557517	2.31451062624789	2.31539622387044	1.42292016949988	1.18212088077518	1.04418159249108	1.92925706879994	2.07778511431261	-0.660872484020128	0.584809491625472	0.967268722441911
Merged-chr11-117166017-2	chr11	117165917	117166117	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33644.0	NM_001113486	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-180967187-4	chr2	180967105	180967305	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177708)	promoter-TSS (NM_001177708)	-20.0	NM_145760	228998.0	Mm.33765	NM_145760	ENSMUSG00000027575	Arfgap1	AI115377|Arf1gap	ADP-ribosylation factor GTPase activating protein 1	protein-coding	5.05984136327636	5.57340370988254	3.64098763805957	2.92559864524142	4.95775611918332	4.24110009106437	5.22150675569958	5.38988396143338	0.405037731627519	0.590794586327207	0.969590568131566
Merged-chr18-80465788-2	chr18	80465688	80465888	+	765.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026295, intron 1 of 12)	intron (NM_026295, intron 1 of 12)	3879.0	NM_026295	67655.0	Mm.312893	NM_026295	ENSMUSG00000033323	Ctdp1	4930563P03Rik|AW553592	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-4837485-1	chr18	4837385	4837585	+	546.0	f1_c57bl6.idr	intron (NR_045881, intron 5 of 9)	intron (NR_045881, intron 5 of 9)	24999.0	NR_045881	100038439.0	Mm.387569	NR_045881	ENSMUSG00000097043	Gm10556	-	predicted gene 10556	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-13370580-4	chr1	13370487	13370687	+	941.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008678, intron 1 of 22)	intron (NM_008678, intron 1 of 22)	1842.0	NM_001302702	17978.0	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-170708361-2	chr1	170708261	170708461	+	597.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001081304, exon 16 of 16)	3' UTR (NM_001081304, exon 16 of 16)	63829.0	NM_177068	320078.0	Mm.287131	NM_177068	ENSMUSG00000038463	Olfml2b	1110018N05Rik|4832415H08Rik|AI467542	olfactomedin-like 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-121551657-2	chr10	121551557	121551757	+	670.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019786, intron 18 of 20)	intron (NM_019786, intron 18 of 20)	35137.0	NM_019786	56480.0	Mm.34580	NM_019786	ENSMUSG00000020115	Tbk1	1200008B05Rik|AI462036|AW048562	TANK-binding kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191396677-3	chr1	191396578	191396778	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_144880, exon 1 of 13)	5' UTR (NM_144880, exon 1 of 13)	363.0	NM_144880	226849.0	Mm.205569	NM_144880	ENSMUSG00000026626	Ppp2r5a	PR61alpha	protein phosphatase 2, regulatory subunit B', alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80024839-2	chr10	80024739	80024939	+	651.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001142701, exon 11 of 23)	exon (NM_001142701, exon 11 of 23)	5164.0	NM_027521	70719.0	Mm.243954	NM_027521	ENSMUSG00000035697	Arhgap45	6330406L22Rik|AW539505|Ha-1|Hmha1	Rho GTPase activating protein 45	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-111368389-1	chr10	111368289	111368489	+	713.5	f0_balb.idr	Intergenic	LTR48|LTR|ERV1	69710.0	NM_027914	71769.0	Mm.45256	NM_027914	ENSMUSG00000035759	Bbs10	1300007O09Rik|AI452285	Bardet-Biedl syndrome 10 (human)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-54156785-2	chr11	54156685	54156885	+	831.714233	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55861.0	NM_011031	18452.0	Mm.3705	NM_011031	ENSMUSG00000018906	P4ha2	AA407196|C76437|P4hl	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-79193868-2	chr16	79193768	79193968	+	582.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-102771.0	NM_178855	19146.0	Mm.5184	NM_008941	ENSMUSG00000022857	Tmprss15	Entk|Prss7	transmembrane protease, serine 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134428005-2	chr6	134427906	134428106	+	737.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355686, intron 3 of 5)	ORR1E|LTR|ERVL-MaLR	13578.0	NM_001355686	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	0.875935872566712	1.17709790518138	1.32875807653752	1.44234992141611	2.15478117659786	1.82960226898471	0.919363078940689	1.80522531004921	1.84939029960201	0.144857637814416	0.594663072022362
Merged-chr6-108695463-3	chr6	108695374	108695574	+	956.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34540.0	NR_104577	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-101214592-1	chr2	101214492	101214692	+	782.0	f1_c57bl6.idr	Intergenic	MLTR11B|LTR|ERVK	-410156.0	NM_009020	19374.0	Mm.4988	NM_009020	ENSMUSG00000032864	Rag2	Rag-2	recombination activating gene 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-106558438-4	chr3	106558328	106558528	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025582, intron 3 of 6)	intron (NM_001025582, intron 3 of 6)	-10626.0	NM_133869	99712.0	Mm.429443	NM_133869	ENSMUSG00000040774	Cept1	9930118K05Rik|mCEPT1	choline/ethanolaminephosphotransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122378278-2	chr8	122378178	122378378	+	567.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001029993, intron 1 of 18)	PB1D9|SINE|Alu	1662.0	NM_001029993	76014.0	Mm.241489	NM_001029993	ENSMUSG00000017478	Zc3h18	1190001B23Rik|5830416A07Rik|Nhn1	zinc finger CCCH-type containing 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-151858449-2	chr4	151858349	151858549	+	710.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081557, intron 1 of 23)	intron (NM_001081557, intron 1 of 23)	3319.0	NM_001081557	100072.0	Mm.318846	NM_001081557	ENSMUSG00000014592	Camta1	1810059M14Rik|2310058O09Rik|AI316882|AW987475|mKIAA0833	calmodulin binding transcription activator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-77016177-4	chr16	77016080	77016280	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013918, intron 1 of 23)	intron (NM_013918, intron 1 of 23)	2111.0	NM_013918	30940.0	Mm.40986	NM_013918	ENSMUSG00000022867	Usp25	-	ubiquitin specific peptidase 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-128408747-4	chr6	128408643	128408843	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_133927)	TTS (NM_133927)	8977.0	NM_001162858	60345.0	Mm.269883	NM_021717	ENSMUSG00000001520	Nrip2	AW491344|NIX1	nuclear receptor interacting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59397456-2	chr15	59397356	59397556	+	855.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164604, intron 2 of 4)	ORR1D2|LTR|ERVL-MaLR	23258.0	NM_001164604	68501.0	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-36953362-3	chr14	36953287	36953487	+	885.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027045, intron 1 of 10)	Lx9|LINE|L1	-12123.0	NM_001347502	72972.0	Mm.27621	NM_027045	ENSMUSG00000058690	Ccser2	1700012P13Rik|2900054P12Rik|AI035535|AW108503|Fam190b|Gcap14	coiled-coil serine rich 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84937398-3	chr8	84937305	84937505	+	900.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019945)	promoter-TSS (NM_019945)	-52.0	NM_019945	56527.0	Mm.154614	NM_019945	ENSMUSG00000053693	Mast1	9430008B02Rik|SAST|SAST170	microtubule associated serine/threonine kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-134540181-4	chr5	134540095	134540295	+	848.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039162, intron 1 of 15)	intron (NM_001039162, intron 1 of 15)	12239.0	NM_001039162	269713.0	Mm.255138	NM_009990	ENSMUSG00000063146	Clip2	B230327O20|CLIP-115|Clip1|Cyln2|WSCR4|mKIAA0291|wbscr4	CAP-GLY domain containing linker protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-95514695-4	chr11	95514594	95514794	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_130858)	promoter-TSS (NM_130858)	-129.0	NM_130858	104079.0	Mm.22970	NM_130858	ENSMUSG00000046719	Nxph3	-	neurexophilin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-55473224-2	chr13	55473131	55473331	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_019813)	TTS (NM_019813)	4545.0	NR_105909	102465569.0		NR_105909	ENSMUSG00000098341	Mir6944	Gm27710|mmu-mir-6944	microRNA 6944	ncRNA	1.14599673800676	1.56228863329363	0.600830223596651	0.590832883128513	0.576439647544648	1.46785049026951	0.60366102235144	1.34654351746137	0.0866579904952202	0.957998272995347	0.998431161219273
Merged-chr13-63108803-3	chr13	63108711	63108911	+	992.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289926, intron 5 of 15)	intron (NM_001289926, intron 5 of 15)	-131218.0	NR_110520	72061.0	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-110656181-2	chr5	110656081	110656281	+	611.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_027156, exon 9 of 15)	exon (NM_027156, exon 9 of 15)	2730.0	NM_027156	69663.0	Mm.5267	NM_027156	ENSMUSG00000029504	Ddx51	2310061O04Rik|AA537002|C81583|R75505	DEAD (Asp-Glu-Ala-Asp) box polypeptide 51	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117195740-4	chr11	117195629	117195829	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3932.0	NM_001113486	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71260537-3	chr17	71260429	71260629	+	953.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357338, intron 4 of 7)	B1F|SINE|Alu	50482.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	2.34909908002521	2.49186613349761	2.86553533796874	2.77859885379246	3.91077773154365	4.0312268601276	3.71937168115304	3.84736127212314	2.02999801008642	0.000417846391694072	0.00969069782386368
Merged-chr1-172315161-3	chr1	172315065	172315265	+	864.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080419, intron 1 of 6)	intron (NM_080419, intron 1 of 6)	2798.0	NM_080419	140559.0	Mm.271717	NM_080419	ENSMUSG00000038034	Igsf8	ESTM34|EWI-2|KCT-4|PGRL	immunoglobulin superfamily, member 8	protein-coding	-1.25988825775205	-1.23266949163275	-0.79486201900107	-1.25163205568768	-1.11141665311639	-1.23041342511115	-1.24072352446377	-1.25010129626714	-1.35571397712562	0.687237561566449	1
Merged-chr11-98017033-2	chr11	98016933	98017133	+	995.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145121, intron 2 of 13)	intron (NM_145121, intron 2 of 13)	1339.0	NM_001159320	12295.0	Mm.41252	NM_031173	ENSMUSG00000020882	Cacnb1	CAB1|Cchb1|Cchlb1	calcium channel, voltage-dependent, beta 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-53351737-4	chr11	53351611	53351811	+	995.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033565, intron 1 of 20)	intron (NM_033565, intron 1 of 20)	944.0	NM_033565	93736.0	Mm.395281	NM_033565	ENSMUSG00000049470	Aff4	AF5Q31|Alf4|Laf4l|MCEF	AF4/FMR2 family, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-127330404-4	chr6	127330312	127330512	+	970.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22445.0	NR_073373	232386.0	Mm.257367	NR_073373	ENSMUSG00000107153	Gm38404	D130058E03	predicted gene, 38404	ncRNA	-1.56355737717652	-1.81244775989375	-1.82128546162293	-1.82854501295842	-1.83962066705452	-1.81053259306168	-1.81928479966835	-1.82724555674025	-1.28500227969968	0.715751224811686	1
Merged-chr6-108530873-2	chr6	108530773	108530973	+	828.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 60 of 61)	RMER10B|LTR|ERVL	41130.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-21778682-3	chr16	21778583	21778783	+	870.2666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023737, intron 1 of 6)	MLT1J|LTR|ERVL-MaLR	9151.0	NM_023737	74147.0	Mm.28100	NM_023737	ENSMUSG00000022853	Ehhadh	1300002P22Rik|HD|L-PBE|LBFP|LBP|MFP|MFP1|PBFE	enoyl-Coenzyme A, hydratase/3-hydroxyacyl Coenzyme A dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-59213764-3	chr3	59213638	59213838	+	895.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177855, intron 15 of 43)	intron (NM_177855, intron 15 of 43)	-2856.0	NM_028808	74191.0	Mm.90067	NM_028808	ENSMUSG00000036362	P2ry13	2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174	purinergic receptor P2Y, G-protein coupled 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-37684888-4	chr16	37684795	37684995	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30527.0	NM_026610	68194.0	Mm.379154	NM_026610	ENSMUSG00000022820	Ndufb4	0610006N12Rik|1300010H20Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex 4	protein-coding	2.7357822809563	3.34611836790501	1.89669639721564	2.66754103236686	3.22314895735709	3.19232187892717	3.26143419364461	2.99406670115847	0.73363682986225	0.282628984511478	0.785313236722722
Merged-chr10-8753640-3	chr10	8753556	8753756	+	864.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 9 of 19)	intron (NM_175155, intron 9 of 19)	132414.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-58938951-4	chr11	58938844	58939044	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022423)	promoter-TSS (NM_022423)	-38.0	NM_022423	108660.0	Mm.249986	NM_022423	ENSMUSG00000020496	Rnf187	2410016F01Rik|AB030190|RACO-1	ring finger protein 187	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-23983059-4	chr17	23982960	23983160	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7830.0	NM_013921	30943.0	Mm.142568	NM_013921	ENSMUSG00000024124	Prss30	2010015P21Rik|Disp|Disp1|Tmprss8	protease, serine 30	protein-coding	5.29969856496553	5.98438092586208	4.99978608490739	5.30256148883487	4.85803566240591	5.06519692567816	5.21854437831652	4.89482987580735	-0.498593849430306	0.115883551740597	0.533117658659386
Merged-chr3-130818878-4	chr3	130818773	130818973	+	987.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-88475.0	NM_001005859	68436.0	Mm.140568	NM_026724	ENSMUSG00000062006	Rpl34	1100001I22Rik	ribosomal protein L34	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71126282-2	chr17	71126182	71126382	+	640.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_010867, exon 38 of 38)	exon (NM_010867, exon 38 of 38)	-57250.0	NM_001357791	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-13891821-2	chr14	13891724	13891924	+	880.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	69489.0	NM_001285780	66231.0	Mm.295875	NM_025435	ENSMUSG00000053453	Thoc7	Nif3l1bp1	THO complex 7	protein-coding	2.2929270031269	1.71920157143155	1.02047164405138	1.87783850295223	1.19103039553322	1.73305677078873	2.66692552474458	1.00331565440586	0.0936809005039628	0.937747139666336	0.998431161219273
Merged-chr4-146454602-2	chr4	146454502	146454702	+	867.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085522, intron 1 of 3)	intron (NM_001085522, intron 1 of 3)	5572.0	NM_001085522	433791.0	Mm.276881	NM_001085522	ENSMUSG00000070605	Zfp992	Gm13251	zinc finger protein 992	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80898652-2	chr10	80898552	80898752	+	562.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_013895)	TTS (NM_013895)	2317.0	NM_013895	30055.0	Mm.142132	NM_013895	ENSMUSG00000020219	Timm13	D10Ertd378e|Tim9|Timm9	translocase of inner mitochondrial membrane 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-25605466-2	chr8	25605366	25605566	+	586.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001735, intron 1 of 9)	ID_B1|SINE|B4	3182.0	NM_001308482	234135.0	Mm.217337	NM_001001735	ENSMUSG00000054823	Nsd3	6720429E03|A530023P05|AI528490|WHISTLE|Whsc1l1	nuclear receptor binding SET domain protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-31559675-3	chr9	31559582	31559782	+	989.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-95444.0	NM_144936	235135.0	Mm.390134	NM_144936	ENSMUSG00000041737	Tmem45b	BC018222	transmembrane protein 45b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-131560344-4	chr7	131560241	131560441	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009774)	promoter-TSS (NM_009774)	-29.0	NM_009774	12237.0	Mm.927	NM_009774	ENSMUSG00000066979	Bub3	AU019800|AU021329|AU043350|AW146323|C78067	BUB3 mitotic checkpoint protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-125051862-2	chr4	125051762	125051962	+	996.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145552, intron 12 of 15)	intron (NM_145552, intron 12 of 15)	13795.0	NM_175223	75563.0	Mm.50304	NM_175223	ENSMUSG00000042707	Dnali1	1700023A09Rik|AW049135	dynein, axonemal, light intermediate polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-31221323-2	chr5	31221223	31221423	+	902.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008014)	promoter-TSS (NM_008014)	-778.0	NM_008014	14208.0	Mm.14501	NM_008014	ENSMUSG00000029147	Ppm1g	AI385652|Fin13	protein phosphatase 1G (formerly 2C), magnesium-dependent, gamma isoform	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-123939947-3	chr4	123939822	123940022	+	886.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22489.0	NM_017475	54170.0	Mm.220922	NM_017475	ENSMUSG00000028646	Rragc	AU041672|Gtr2|RAGC|TIB929|YGR163W	Ras-related GTP binding C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-21825114-2	chr10	21825014	21825214	+	792.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57070.0	NM_001161845	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47598185-3	chr17	47598087	47598287	+	900.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081635, intron 6 of 6)	AT_rich|Low_complexity|Low_complexity	4720.0	NM_007632	12445.0	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-13652925-2	chr1	13652825	13653025	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145381, intron 1 of 6)	MTB|LTR|ERVL-MaLR	7584.0	NM_145381	212442.0	Mm.89572	NM_145381	ENSMUSG00000025937	Lactb2	Cgi-83|E430032H21Rik	lactamase, beta 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-107006569-1	chr11	107006469	107006669	+	583.0	f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-7044.0	NM_010655	16647.0	Mm.12508	NM_010655	ENSMUSG00000018362	Kpna2	2410044B12Rik|IPOA1|PTAC58|Rch1	karyopherin (importin) alpha 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-124257635-3	chr9	124257550	124257750	+	818.277771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55044.0	NM_001243118	630836.0	Mm.458553	NM_001243117	ENSMUSG00000074829	2010315B03Rik	BC029716	RIKEN cDNA 2010315B03 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-29024600-4	chr17	29024506	29024706	+	844.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8054.0	NM_013663	20383.0	Mm.6787	NM_013663	ENSMUSG00000071172	Srsf3	AL024116|Sfrs3|X16	serine/arginine-rich splicing factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-8857769-2	chr19	8857669	8857869	+	706.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	7001.0	NM_001013019	68852.0	Mm.265792	NM_001013019	ENSMUSG00000071656	Lrrn4cl	1110067I12Rik	LRRN4 C-terminal like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-73324649-4	chr11	73324542	73324742	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023113)	promoter-TSS (NM_023113)	-5.0	NM_023113	11484.0	Mm.293574	NM_023113	ENSMUSG00000020774	Aspa	Acy-2|Acy2|nur7	aspartoacylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-121076988-2	chr7	121076888	121077088	+	675.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_021554)	TTS (NM_021554)	-2458.0	NM_030691	80719.0	Mm.160384	NM_030691	ENSMUSG00000035004	Igsf6	-	immunoglobulin superfamily, member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76199465-4	chr15	76199365	76199565	+	944.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_201392)	promoter-TSS (NM_201392)	-59.0	NM_201392	18810.0	Mm.234912	NM_011117	ENSMUSG00000022565	Plec	AA591047|AU042537|EBS1|PCN|PLTN|Plec1	plectin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-8419160-2	chr6	8419060	8419260	+	629.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001302353, intron 4 of 4)	intron (NM_001302353, intron 4 of 4)	90001.0	NR_040452	320312.0	Mm.374890	NR_040452	ENSMUSG00000087305	A430035B10Rik	2810488G03Rik	RIKEN cDNA A430035B10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-62182125-1	chr18	62182025	62182225	+	941.0	f0_balb.idr	intron (NM_001013754, intron 1 of 1)	intron (NM_001013754, intron 1 of 1)	2025.0	NM_001013754	225609.0	Mm.296917	NM_001013754	ENSMUSG00000054589	Gm9949	EG225609	predicted gene 9949	protein-coding	1.78376290353654	0.913943521789462	3.15610601932702	0.844441820087817	1.80313466200121	0.922236776249775	3.18257498561365	0.850027001307881	0.0415949050492683	0.987215013116154	0.998431161219273
Merged-chr2-102967001-4	chr2	102966901	102967101	+	847.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-65336.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-65764510-2	chr18	65764410	65764610	+	748.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36068.0	NM_025468	66286.0	Mm.27800	NM_025468	ENSMUSG00000024516	Sec11c	1810029G24Rik|Sec11l3	SEC11 homolog C, signal peptidase complex subunit	protein-coding	0.820007556643215	1.79306318431953	0.59172355686393	0.568407960388346	0.343775262964399	0.627830811649489	0.369438563944524	0.572516400623453	-3.06520409246065	0.0665656394474819	0.386885656023691
Merged-chr1-120028849-1	chr1	120028749	120028949	+	747.0	f1_c57bl6.idr	intron (NM_001012322, intron 3 of 13)	intron (NM_001012322, intron 3 of 13)	21869.0	NM_001012322	319229.0	Mm.189223	NM_001012322	ENSMUSG00000026387	Sctr	6530402O03Rik	secretin receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-57431485-3	chr16	57431406	57431606	+	866.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	78229.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	2.88966921381386	2.2188292036259	3.63232424454727	1.19713768596554	1.62243497336368	2.76815497755489	1.24361850728095	2.35537525364747	-1.23868305907835	0.219831819779614	0.710826235364411
Merged-chr6-115767542-4	chr6	115767444	115767644	+	989.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-5078.0	NM_001168256	94346.0	Mm.29739	NM_144805	ENSMUSG00000059900	Tmem40	9030407H20Rik|AV091463|W64236	transmembrane protein 40	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3359532-4	chr12	3359442	3359642	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5590.0	NM_008445	16570.0	Mm.7688	NM_008445	ENSMUSG00000020668	Kif3c	mKIAA4058	kinesin family member 3C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-10499324-2	chr16	10499224	10499424	+	686.3000490000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001302619, intron 2 of 19)	intron (NM_001302619, intron 2 of 19)	9543.0	NM_001243761	12265.0	Mm.249560	NM_007575	ENSMUSG00000022504	Ciita	C2ta|EG669998|Gm9475|Mhc2ta	class II transactivator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-41744247-1	chr5	41744147	41744347	+	542.0	f1_c57bl6.idr	Intergenic	Intergenic	19973.0	NM_007524	12020.0	Mm.2530	NM_007524	ENSMUSG00000049691	Nkx3-2	Bapx1|NKX3.2|Nkx-3.2	NK3 homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-184626599-3	chr1	184626503	184626703	+	883.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB3|LINE|L1	-68912.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-147122431-2	chr4	147122331	147122531	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4A|LINE|L1	-53435.0	NM_001039209	195531.0	Mm.270762	NM_001039209	ENSMUSG00000078496	Zfp982	Gm13152	zinc finger protein 982	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-114900807-1	chr9	114900707	114900907	+	584.0	f1_c57bl6.idr	3' UTR (NM_175380, exon 8 of 8)	3' UTR (NM_175380, exon 8 of 8)	33180.0	NM_175380	333433.0	Mm.38198	NM_175380	ENSMUSG00000050627	Gpd1l	2210409H23Rik|D9Ertd660e	glycerol-3-phosphate dehydrogenase 1-like	protein-coding	-0.30001820056506	0.325682726589229	-0.290943592783678	0.237294691280288	-0.299176228441726	-0.285519636255904	-0.289967682789276	-0.127171263385799	-2.79479132679739	0.252743097391748	1
Merged-chr9-90197284-2	chr9	90197204	90197404	+	763.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001003911, intron 23 of 23)	intron (NM_001003911, intron 23 of 23)	34326.0	NM_001311115	108153.0	Mm.102141	NM_001003911	ENSMUSG00000032363	Adamts7	ADAM-TS7|ADAMTS7B	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80136998-3	chr10	80136906	80137106	+	808.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_036582, intron 3 of 10)	intron (NR_036582, intron 3 of 10)	381.0	NM_001195268	100503659.0	Mm.485395	NM_015761	ENSMUSG00000035640	Cbarp	9630008F14|Dos|R29144/1	calcium channel, voltage-dependent, beta subunit associated regulatory protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-121372019-4	chr14	121371909	121372109	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145465, intron 1 of 10)	intron (NM_145465, intron 1 of 10)	7221.0	NM_145465	223255.0	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91183989-4	chr2	91183895	91184095	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145527)	promoter-TSS (NM_145527)	-948.0	NM_145527	228355.0	Mm.36410	NM_145527	ENSMUSG00000040687	Madd	9630059K23Rik|IG20	MAP-kinase activating death domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152677277-4	chr1	152677174	152677374	+	972.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346117, intron 1 of 18)	intron (NM_001346117, intron 1 of 18)	-52057.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-63149435-2	chr9	63149335	63149535	+	596.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163758)	promoter-TSS (NM_001163758)	-474.0	NM_001163758	207667.0	Mm.36349	NM_172446	ENSMUSG00000022245	Skor1	AV273001|C230094B15Rik|Corl1|Lbxcor1	SKI family transcriptional corepressor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-20202514-2	chr11	20202414	20202614	+	842.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008996, intron 1 of 5)	intron (NM_008996, intron 1 of 5)	1102.0	NM_008996	19324.0	Mm.271944	NM_008996	ENSMUSG00000020149	Rab1a	Gtbp|Rab-1|Rab1|Ypt1|mKIAA3012	RAB1A, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30265237-4	chr7	30265140	30265340	+	990.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_146186, exon 9 of 33)	exon (NM_146186, exon 9 of 33)	-14854.0	NR_144498	108167416.0	Mm.471845	NR_144498		LOC108167416	-	uncharacterized LOC108167416	ncRNA	1.22179879483542	1.78516916639375	0.924379038652538	1.55301762061469	1.36444400557719	1.91072963960569	0.928031934812847	1.67453056370415	0.373782366668618	0.767913104532546	0.998431161219273
Merged-chr19-32957879-2	chr19	32957779	32957979	+	614.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-199233.0	NR_039552	100628575.0		NR_039552	ENSMUSG00000106278	Mir3970	mmu-mir-3970|mu-mir-3970	microRNA 3970	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99090091-3	chr7	99089965	99090165	+	863.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 4 of 14)	intron (NM_178635, intron 4 of 14)	51079.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-49762846-4	chr7	49762722	49762922	+	824.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146053, intron 3 of 5)	intron (NM_001146053, intron 3 of 5)	3310.0	NM_001146052	53415.0	Mm.20801	NM_016865	ENSMUSG00000039745	Htatip2	AW111545|Cc3|Tip30	HIV-1 Tat interactive protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30408570-3	chr2	30408462	30408662	+	910.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007760, intron 4 of 13)	intron (NM_007760, intron 4 of 13)	7186.0	NM_007760	12908.0	Mm.20396	NM_007760	ENSMUSG00000026853	Crat	AW107812|CARAT	carnitine acetyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106822601-2	chr11	106822501	106822701	+	589.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_025481, exon 19 of 19)	3' UTR (NM_025481, exon 19 of 19)	33349.0	NM_001166685	320162.0	Mm.30524	NM_177088	ENSMUSG00000018372	Cep95	4732496G21Rik|AI118346|AI448335|Ccdc45|D330027A14Rik|F630025I20Rik	centrosomal protein 95	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-164526072-1	chr2	164525972	164526172	+	701.0	f0_balb.idr	Intergenic	RLTR44-int|LTR|ERVK	-24458.0	NR_152178	670507.0	Mm.404686	NR_152178		Gm14317	-	predicted gene 14317	ncRNA	-1.01619048107133	-0.995033651274249	-1.00815691281228	-1.0117845606299	-0.146812645560773	-0.992189785753965	-1.00518609405377	-1.01132261587602	3.17967657538059	0.326742161226751	1
Merged-chr16-9133007-4	chr16	9132945	9133145	+	753.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR41C|LTR|ERV1	302945.0	NM_001081400	69053.0	Mm.390868	NM_001081400	ENSMUSG00000022507	1810013L24Rik	1110017P05Rik|3010002C02Rik|AA792997|AW124177|Gm19906|R74903	RIKEN cDNA 1810013L24 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128371753-2	chr2	128371653	128371853	+	645.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_028591)	TTS (NR_028591)	57598.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-23097201-4	chr2	23097099	23097299	+	773.354187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355638, intron 10 of 13)	MTEb|LTR|ERVL-MaLR	28127.0	NM_001355638	74159.0	Mm.181973	NM_028793	ENSMUSG00000026781	Acbd5	1300014E15Rik	acyl-Coenzyme A binding domain containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-147753236-2	chr5	147753136	147753336	+	825.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27248.0	NM_010228	14254.0	Mm.389712	NM_010228	ENSMUSG00000029648	Flt1	AI323757|Flt-1|VEGFR-1|VEGFR1|sFlt1	FMS-like tyrosine kinase 1	protein-coding	-1.22315906685268	-1.19557143632602	-1.20673282037136	-0.55836125556573	-1.22265483704505	-1.19315271784257	-1.20420612767407	-1.21425999345206	-2.67891099987134	0.437057736398543	1
Merged-chr6-51532815-4	chr6	51532730	51532930	+	939.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361581, intron 1 of 6)	intron (NM_001361581, intron 1 of 6)	8570.0	NM_001361580	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30350969-2	chr2	30350869	30351069	+	948.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346806, intron 3 of 12)	L1M4a2|LINE|L1	8347.0	NM_139302	227700.0	Mm.33343	NM_139302	ENSMUSG00000026860	Sh3glb2	SPAS-1	SH3-domain GRB2-like endophilin B2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96692778-4	chr3	96692734	96692934	+	876.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3541.0	NM_146135	229615.0	Mm.1635	NM_018812	ENSMUSG00000028101	Pias3	Pias3l	protein inhibitor of activated STAT 3	protein-coding	2.42682584993156	3.25294237149355	4.24213767202257	3.70924853832071	2.58100323806443	1.66761268402018	3.65412878678243	3.06319635864022	-1.00160703523123	0.172845635920086	0.640855159947368
Merged-chr11-21377742-3	chr11	21377653	21377853	+	771.844421	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(GAA)n|Simple_repeat|Simple_repeat	-6486.0	NM_001290634	216558.0	Mm.28877	NM_139297	ENSMUSG00000001891	Ugp2	UDPGP|UGPase	UDP-glucose pyrophosphorylase 2	protein-coding	1.94319202988931	1.627854791534	2.11209186938232	2.52958515735402	1.31126347297168	1.63899193486224	1.7517432530174	1.54433516519637	-1.59264065524617	0.117898577997745	0.538905416826286
Merged-chr9-61860423-2	chr9	61860323	61860523	+	748.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54087.0	NM_018853	56040.0	Mm.3158	NM_018853	ENSMUSG00000007892	Rplp1	2410042H16Rik|Arpp1|C430017H15Rik	ribosomal protein, large, P1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-102886378-4	chr13	102886261	102886461	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175171, intron 4 of 28)	intron (NM_175171, intron 4 of 28)	126106.0	NR_130171	76624.0	Mm.426384	NR_130171	ENSMUSG00000091906	1700099I09Rik	-	RIKEN cDNA 1700099I09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-46134818-3	chr13	46134721	46134921	+	976.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-138900.0	NM_001005422	380842.0	Mm.188108	NM_001005422	ENSMUSG00000063529	Stmnd1	Gm1574	stathmin domain containing 1	protein-coding	1.31012034793152	0.994017374621247	0.969752948555322	1.38336290889851	1.60960875134815	1.8301415481652	2.01120073987608	2.6848774667744	3.02163415858774	0.0118903849670778	0.123125004748273
Merged-chr17-5561408-3	chr17	5561312	5561512	+	598.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	68812.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-76055408-4	chr13	76055308	76055508	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_175495, exon 1 of 1)	3' UTR (NM_175495, exon 1 of 1)	1588.0	NM_175495	238725.0	Mm.167172	NM_175495	ENSMUSG00000045509	Gpr150	C030001A19Rik|PGR11	G protein-coupled receptor 150	protein-coding	4.41177570818581	4.54033542661707	4.00315912724409	4.54672116005562	4.20342969665237	3.47003876825071	4.38209704325871	2.32041743414127	-0.778726541834444	0.135409204322081	0.574816685071332
Merged-chr3-96219295-4	chr3	96219162	96219362	+	984.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178213)	promoter-TSS (NM_178213)	-654.0	NM_178213	621893.0		NM_178213	ENSMUSG00000063689	Hist2h2ab	EG621893|H2a-613a	histone cluster 2, H2ab	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-76590878-2	chr11	76590778	76590978	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-13139.0	NM_198894	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85340182-4	chr12	85340111	85340311	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145138)	promoter-TSS (NM_145138)	-849.0	NM_145138	217718.0	Mm.29071	NM_145138	ENSMUSG00000034290	Nek9	C130021H08Rik	NIMA (never in mitosis gene a)-related expressed kinase 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83125116-4	chr6	83124970	83125170	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023547)	promoter-TSS (NM_023547)	-41.0	NM_023547	70020.0	Mm.27814	NM_023547	ENSMUSG00000030034	Ino80b	2510009I23Rik|HMG1YL4|Hmga1l4|Papa1|Znhit4	INO80 complex subunit B	protein-coding	0.734254342888063	0.783192221490302	1.17244250068705	1.28475659161757	0.737421859099823	1.87721073351667	1.47590701534141	1.73436451579115	1.9795544243101	0.165933046836767	0.631218990471634
Merged-chr12-99640755-2	chr12	99640655	99640855	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12781.0	NR_045288	73457.0	Mm.383439	NR_045288	ENSMUSG00000100211	1700064M15Rik	-	RIKEN cDNA 1700064M15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165043189-4	chr2	165043101	165043301	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8422.0	NM_144892	228869.0	Mm.233080	NM_144892	ENSMUSG00000039804	Ncoa5	CIA	nuclear receptor coactivator 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-148336319-4	chr3	148336215	148336415	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	618320.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	-0.00906314101381761	-0.174543700992651	0.290062335611481	-0.372375929737636	-0.37677897394568	-0.364287670510888	-0.368361495744906	-0.371830974706302	-3.567597147251	0.145631261762242	1
Merged-chr2-30362965-2	chr2	30362865	30363065	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1268.0	NM_001242407	108958.0	Mm.254974	NM_175392	ENSMUSG00000026858	Miga2	5730472N09Rik|AA408683|AI790341|C9orf54|Fam73b|R74766	mitoguardin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16461938-2	chr7	16461838	16462038	+	578.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008718, exon 8 of 12)	exon (NM_008718, exon 8 of 12)	9159.0	NM_026938	69094.0	Mm.29633	NM_026938	ENSMUSG00000019158	Tmem160	1810008O21Rik	transmembrane protein 160	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-102249762-2	chr11	102249662	102249862	+	637.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153544, intron 1 of 9)	intron (NM_153544, intron 1 of 9)	880.0	NM_153544	217216.0	Mm.247335	NM_153544	ENSMUSG00000034773	BC030867	-	cDNA sequence BC030867	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-102885532-4	chr2	102885442	102885642	+	834.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039150, intron 1 of 13)	intron (NM_001039150, intron 1 of 13)	16123.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-61616375-2	chr8	61616275	61616475	+	778.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001293772, intron 10 of 21)	intron (NM_001293772, intron 10 of 21)	-25206.0	NM_001293774	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-54894478-1	chr14	54894378	54894578	+	1000.0	f0_balb.idr	exon (NM_019402, exon 1 of 7)	exon (NM_019402, exon 1 of 7)	335.0	NM_019402	54196.0	Mm.7723	NM_019402	ENSMUSG00000022194	Pabpn1	PAB2|Pabp3|mPABII	poly(A) binding protein, nuclear 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-4422268-1	chr11	4422168	4422368	+	784.0	f0_balb.idr	intron (NM_029458, intron 5 of 10)	intron (NM_029458, intron 5 of 10)	18814.0	NM_029458	75828.0	Mm.159592	NM_029458	ENSMUSG00000020419	Hormad2	4930529M09Rik	HORMA domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-120524912-2	chr5	120524812	120525012	+	715.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177595, intron 10 of 13)	ORR1A2|LTR|ERVL-MaLR	13720.0	NM_001177594	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-88719442-2	chr5	88719342	88719542	+	718.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1429.0	NM_026735	68473.0	Mm.35764	NM_026735	ENSMUSG00000006262	Mob1b	1110003E08Rik|AU015450|B230364F10|Mobkl1a	MOB kinase activator 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-67578257-2	chr11	67578157	67578357	+	805.583313	f1_balb.idr|f1_c57bl6.idr	intron (NM_008088, intron 1 of 13)	intron (NM_008088, intron 1 of 13)	-8243.0	NM_001109657	14457.0	Mm.40338	NM_008088	ENSMUSG00000033066	Gas7	AW124766|B230343A10Rik|Gas7-cb	growth arrest specific 7	protein-coding	0.258898478750041	-0.178145153048111	-0.182449504537794	-0.185760139561796	0.354203670739974	0.167789790285449	-0.181501446142424	-0.185182423455003	0.996098914185233	0.679465313789212	1
Merged-chr18-12141482-4	chr18	12141379	12141579	+	998.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024182, intron 6 of 12)	intron (NM_024182, intron 6 of 12)	12629.0	NM_024182	66878.0	Mm.28551	NM_024182	ENSMUSG00000024404	Riok3	1200013N13Rik|D18Ertd331e|E130306C24Rik|Sudd	RIO kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166290991-2	chr2	166290891	166291091	+	777.833313	f1_balb.idr|f1_c57bl6.idr	intron (NR_033467, intron 2 of 2)	intron (NR_033467, intron 2 of 2)	17083.0	NR_033467	670775.0	Mm.384326	NR_033467	ENSMUSG00000084840	Gm11468	-	predicted gene 11468	ncRNA	0.879076637949341	2.18775020853519	1.66972790037469	0.907947002486038	0.883462636181379	2.00213369091174	1.68448702582538	1.74864539647583	0.283460548130667	0.831199347186689	0.998431161219273
Merged-chr6-54282527-1	chr6	54282427	54282627	+	694.0	f0_balb.idr	intron (NM_001163640, intron 7 of 12)	Lx8|LINE|L1	9705.0	NM_023543	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-63106926-2	chr14	63106826	63107026	+	791.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15536.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80570916-6	chr10	80570679	80570879	+	943.086121	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_078477, intron 1 of 1)	intron (NM_078477, intron 1 of 1)	6517.0	NM_078477	118445.0	Mm.41513	NM_078477	ENSMUSG00000035397	Klf16	AI843742|BTEB4|DRRF	Kruppel-like factor 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-33391991-8	chr19	33391897	33392097	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001167818, exon 1 of 7)	5' UTR (NM_001167818, exon 1 of 7)	298.0	NM_001167818	67795.0	Mm.204591	NM_001146342	ENSMUSG00000071573	Rnls	6530404N21Rik|AI452315|AW060440|C10orf59	renalase, FAD-dependent amine oxidase	protein-coding	3.63951975252462	3.56712779425368	4.01262664622698	3.23400182932001	4.41301975535283	4.2414061718595	4.33676457056436	4.71918635808332	1.09496598622192	0.0132339482012394	0.132759958627484
Merged-chr9-40330783-4	chr9	40330635	40330835	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357618, intron 3 of 20)	intron (NM_001357618, intron 3 of 20)	-2737.0	NR_040728	73558.0	Mm.398307	NR_040728		1700110K17Rik	-	RIKEN cDNA 1700110K17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52626876-2	chr13	52626776	52626976	+	994.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011518, intron 7 of 13)	intron (NM_011518, intron 7 of 13)	29994.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-173740120-3	chr2	173740022	173740222	+	918.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019806, intron 1 of 5)	intron (NM_019806, intron 1 of 5)	2551.0	NM_019806	56491.0	Mm.260456	NM_019806	ENSMUSG00000054455	Vapb	AI225786|AI840687|AI848259|D2Abb2e|R75548|VAP33b|Vamp33b	vesicle-associated membrane protein, associated protein B and C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25703219-2	chr7	25703119	25703319	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011577, intron 5 of 6)	intron (NM_011577, intron 5 of 6)	15834.0	NM_028771	52132.0	Mm.278798	NM_028771	ENSMUSG00000002608	Ccdc97	1200014H14Rik|2810446P04Rik|AA545218|D7Ertd462e	coiled-coil domain containing 97	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-4905183-2	chr17	4905083	4905283	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-89891.0	NM_001085355	239985.0	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3305457-2	chr12	3305357	3305557	+	997.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_016676, intron 1 of 5)	B2_Mm2|SINE|B2	4512.0	NM_016676	19325.0	Mm.378993	NM_016676	ENSMUSG00000020671	Rab10	AW107754	RAB10, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-113795879-2	chr13	113795779	113795979	+	842.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172595, intron 1 of 4)	intron (NM_172595, intron 1 of 4)	1371.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-21276627-3	chr19	21276571	21276771	+	869.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009551, intron 2 of 5)	intron (NM_009551, intron 2 of 5)	4393.0	NM_009551	22682.0	Mm.292405	NM_009551	ENSMUSG00000024750	Zfand5	2310057A04Rik|5830475F03Rik|AA415485|Za20d2|Zfp216	zinc finger, AN1-type domain 5	protein-coding	-0.0520594035846317	-0.507539786449747	-0.511265653646284	-0.514135633058337	0.126383442287617	-0.506698995047892	-0.510444466537128	-0.513634547488846	0.613048320368843	0.827142336386976	1
Merged-chr7-145109642-1	chr7	145109542	145109742	+	796.0	f1_c57bl6.idr	Intergenic	Intergenic	98477.0	NR_033626	100040049.0	Mm.102235	NR_033626	ENSMUSG00000109305	1810010D01Rik	Gm2572	RIKEN cDNA 1810010D01 gene	ncRNA	0.925305025959348	1.4531758147252	0.6412112239315	1.43683124455037	0.619357220295911	1.21445541991998	1.1651757594355	0.633804931788304	-0.972727213413683	0.5288655754986	0.949464880269839
Merged-chr2-38221180-2	chr2	38221080	38221280	+	935.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_146122, intron 2 of 21)	intron (NM_146122, intron 2 of 21)	66204.0	NM_146122	227801.0	Mm.314245	NM_146122	ENSMUSG00000035392	Dennd1a	6030446I19Rik|connecdenn	DENN/MADD domain containing 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-88344091-3	chr7	88344021	88344221	+	749.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	66036.0	NM_001311790	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0.336559335447991	0.367846905399407	1.22992117667781	1.17593124977869	0.338557378228949	0.370100543190145	0.359996919048662	1.18547751731729	-1.03537264975884	0.590789286291216	1
Merged-chr10-127532277-2	chr10	127532177	127532377	+	811.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_183297, intron 1 of 1)	intron (NM_183297, intron 1 of 1)	2282.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21166942-4	chr9	21166851	21167051	+	862.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183408, intron 1 of 14)	intron (NM_183408, intron 1 of 14)	1237.0	NM_183408	18577.0	Mm.191749	NM_019798	ENSMUSG00000032177	Pde4a	D9Ertd60e|Dpde2	phosphodiesterase 4A, cAMP specific	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-14590952-2	chr1	14590852	14591052	+	737.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A|LTR|ERVL-MaLR	165014.0	NM_001360810	17681.0	Mm.5820	NM_010827	ENSMUSG00000025930	Msc	MyoR|bHLHa22	musculin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-59545245-4	chr11	59545096	59545296	+	690.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153314, intron 2 of 9)	B3|SINE|B2	2510.0	NR_153314	216799.0	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-129255179-4	chr6	129255070	129255270	+	887.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16688.0	NR_040268	76432.0	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-111063872-2	chr9	111063776	111063976	+	654.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6358.0	NM_001302376	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	0.188059898338782	-0.261584044240898	-0.269088189315265	-0.274969020872452	-0.283421800343511	1.01495753675282	-0.267421822923211	-0.273935765122752	2.12973287128711	0.37540250517234	1
Merged-chr15-59719567-4	chr15	59719464	59719664	+	854.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	70910.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55555396-2	chr14	55555296	55555496	+	692.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-4633.0	NR_037572	28199.0	Mm.11535	NM_133734	ENSMUSG00000022214	Dcaf11	0710008A13Rik|C76035|D14Ucla1|Dacf11|GLO14|Wdr23	DDB1 and CUL4 associated factor 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-111145665-4	chr8	111145577	111145777	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040363)	promoter-TSS (NR_040363)	-179.0	NR_040364	434350.0	Mm.442061	NR_040363		9430091E24Rik	-	RIKEN cDNA 9430091E24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-44605652-1	chr18	44605552	44605752	+	736.0	f0_balb.idr	intron (NM_001085373, intron 3 of 18)	intron (NM_001085373, intron 3 of 18)	-56013.0	NR_026853	626275.0	Mm.427116	NR_026853	ENSMUSG00000097610	A930012L18Rik	-	RIKEN cDNA A930012L18 gene	ncRNA	0.665511591950157	0.911511006827294	0.489177392833029	0.472456098034703	0.448662709927883	0.515578167006215	0.638378567608866	0.317794913858879	-1.1313466141541	0.492704120097432	1
Merged-chr5-65973394-4	chr5	65973303	65973503	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081104, intron 4 of 4)	LTR84a|LTR|ERVL	6279.0	NM_001081104	231252.0	Mm.140015	NM_001081104	ENSMUSG00000029205	Chrna9	2410015I05Rik|Acra9|EG666827|Gm8311	cholinergic receptor, nicotinic, alpha polypeptide 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-33244608-2	chr4	33244508	33244708	+	996.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001033225)	TTS (NM_001033225)	4179.0	NM_001033225	108767.0	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-31083451-2	chr17	31083406	31083606	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009593, intron 2 of 14)	MTB_Mm|LTR|ERVL-MaLR	25812.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	-0.999004873958601	-1.11947659419295	-1.13046989609953	-0.605296720201681	-1.1420649015184	-1.11709429981014	-1.1279812535142	-1.13788371555445	-2.63305150711585	0.415139208447062	1
Merged-chr10-39958486-2	chr10	39958386	39958586	+	674.166687	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001113388, exon 4 of 4)	3' UTR (NM_001113388, exon 4 of 4)	1667.0	NM_001173500	100041085.0	Mm.332530	NM_001173500	ENSMUSG00000071335	Mfsd4b3	G630090E17Rik|Naglt1c	major facilitator superfamily domain containing 4B3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-3205398-2	chr8	3205298	3205498	+	608.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001330056, intron 3 of 21)	MTD|LTR|ERVL-MaLR	74219.0	NM_010568	16337.0	Mm.268003	NM_010568	ENSMUSG00000005534	Insr	4932439J01Rik|CD220|D630014A15Rik|IR|IR-A|IR-B	insulin receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21594309-2	chr9	21594209	21594409	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_178619, exon 2 of 2)	3' UTR (NM_178619, exon 2 of 2)	-1478.0	NM_138303	74766.0	Mm.475712	NM_138303	ENSMUSG00000032182	Yipf2	1300010K09Rik	Yip1 domain family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44246655-4	chr7	44246541	44246741	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025880)	promoter-TSS (NM_025880)	-81.0	NM_025880	668661.0	Mm.274492	NM_025880	ENSMUSG00000045411	2410002F23Rik	-	RIKEN cDNA 2410002F23 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-26164681-2	chr2	26164581	26164781	+	921.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24175.0	NM_001256521	109299.0	Mm.389259	NM_001256521		Tmem250-ps	AI551216|C330006A16Rik	transmembrane protein 250, pseudogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-90789770-4	chr5	90789601	90789801	+	998.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3600.0	NM_203320	330122.0	Mm.244289	NM_203320	ENSMUSG00000029379	Cxcl3	Dcip1|Gm1960	chemokine (C-X-C motif) ligand 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120467605-4	chr11	120467501	120467701	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008244)	promoter-TSS (NM_008244)	-1.0	NM_197995	70317.0	Mm.485046	NM_197995	ENSMUSG00000057594	Arl16	2600005N12Rik	ADP-ribosylation factor-like 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-111059264-4	chr9	111059213	111059413	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4_|SINE|ID	-1795.0	NM_001302376	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-101174854-3	chr2	101174727	101174927	+	613.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MCa|LINE|L1	-449921.0	NM_009020	19374.0	Mm.4988	NM_009020	ENSMUSG00000032864	Rag2	Rag-2	recombination activating gene 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-136471036-3	chr6	136470876	136471076	+	736.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-47875.0	NM_019426	54343.0	Mm.173271	NM_019426	ENSMUSG00000030213	Atf7ip	2610204M12Rik|AM|Mcaf1	activating transcription factor 7 interacting protein	protein-coding	2.4818350749351	2.2028696014536	1.27738646310862	1.24592048550502	2.09505194038942	2.2202076527614	2.97078097841984	3.18913462897389	1.6712875047996	0.0839540880588819	0.444388741998734
Merged-chr8-34816793-1	chr8	34816693	34816893	+	825.0	f1_c57bl6.idr	intron (NM_176933, intron 2 of 3)	intron (NM_176933, intron 2 of 3)	9183.0	NM_176933	319520.0	Mm.170276	NM_176933	ENSMUSG00000031530	Dusp4	2700078F24Rik|AI844617|BB104621|E130306H24Rik|MKP2	dual specificity phosphatase 4	protein-coding	1.83867617010985	0.809957083019678	0.792132840084777	1.87719860679742	0.757503990870928	1.84289969389276	0.796107704297132	1.59621951032064	-0.309321003903186	0.836455674080041	0.998431161219273
Merged-chr5-62616109-3	chr5	62616011	62616211	+	936.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178407, intron 28 of 32)	intron (NM_178407, intron 28 of 32)	150066.0	NM_178407	212285.0	Mm.244403	NM_178407	ENSMUSG00000037999	Arap2	Centd1|Gm148|mKIAA0580	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-100110209-4	chr12	100110115	100110315	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2116.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19086962-2	chr7	19086862	19087062	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_037282)	TTS (NR_037282)	134.0	NR_037282	100526504.0		NR_037282	ENSMUSG00000092659	Mir3100	mir-3100|mmu-mir-3100	microRNA 3100	ncRNA	-1.21575676353841	-1.1882771616738	-1.1995328574972	-1.2087786211754	-1.21524488394202	-1.18583800543462	-1.19698481468061	-0.540595393272118	2.74438217975722	0.425994238664144	1
Merged-chr7-110926062-2	chr7	110925962	110926162	+	581.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_194464, intron 5 of 20)	intron (NM_194464, intron 5 of 20)	20125.0	NM_010826	17540.0	Mm.250023	NM_010826	ENSMUSG00000005611	Mrvi1	BB115629|Irag|Ris1	MRV integration site 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-66145323-1	chr5	66145223	66145423	+	653.0	f1_c57bl6.idr	intron (NM_001127382, intron 2 of 7)	intron (NM_001127382, intron 2 of 7)	5655.0	NM_001291226	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	2.29294340613415	1.16093218798194	2.33102795416766	2.42376203832375	1.08502697427335	1.82073971008381	1.75913458512432	1.70456004532163	-1.44121724851337	0.190864738888948	0.669546561020494
Merged-chr15-76198800-4	chr15	76198715	76198915	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_201393)	promoter-TSS (NM_201393)	591.0	NM_201392	18810.0	Mm.234912	NM_011117	ENSMUSG00000022565	Plec	AA591047|AU042537|EBS1|PCN|PLTN|Plec1	plectin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-68145817-3	chr18	68145749	68145949	+	938.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172631, intron 3 of 5)	intron (NM_172631, intron 3 of 5)	-82097.0	NM_001357444	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-6562522-4	chr15	6562406	6562606	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17341.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-143042594-1	chr7	143042494	143042694	+	810.0	f1_c57bl6.idr	intron (NR_110355, intron 2 of 4)	intron (NR_110355, intron 2 of 4)	-10156.0	NM_133655	12520.0	Mm.806	NM_133655	ENSMUSG00000037706	Cd81	Tapa-1|Tapa1|Tspan28	CD81 antigen	protein-coding	3.05032354162283	3.18286048108749	1.19406426258963	2.7676669399325	2.05117933958855	2.46916020433883	1.20333490000082	1.16657088648625	-1.87798690316304	0.0762829938400004	0.418887620649117
Merged-chr7-80386042-1	chr7	80385942	80386142	+	591.0	f1_c57bl6.idr	intron (NM_010194, intron 3 of 18)	intron (NM_010194, intron 3 of 18)	1904.0	NM_010194	14159.0	Mm.48757	NM_010194	ENSMUSG00000053158	Fes	AI586313|BB137047|FPS|c-fes	feline sarcoma oncogene	protein-coding	-0.116966543709782	-0.280114130767136	-0.470696147387775	-0.473470509337446	-0.477377839036478	-0.466273846962649	0.0902072427930978	-0.472986391933508	0.255624199594721	0.921804833687152	1
Merged-chr3-21955866-4	chr3	21955776	21955976	+	996.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-120776.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-71092383-1	chr9	71092283	71092483	+	606.0	f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	70250.0	NM_001271843	64008.0	Mm.449427	NM_022026	ENSMUSG00000032204	Aqp9	1700020I22Rik|AI266899|AQP-9	aquaporin 9	protein-coding	1.40360170628058	2.2300285319635	0.802680750355122	1.91035698853323	1.53096539336475	1.08606670559829	0.806941497006535	0.790204025305818	-2.03529134790326	0.139856576400484	0.583990442106614
Merged-chr17-3224624-4	chr17	3224528	3224728	+	905.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-101945.0	NM_001122998	24001.0	Mm.137134	NM_011878	ENSMUSG00000023800	Tiam2	3000002F19Rik|STEF|mKIAA2016	T cell lymphoma invasion and metastasis 2	protein-coding	-1.7024385483431	-1.81249224917775	-1.82134771053534	-1.82862185015837	-1.70038292649591	-1.81057323376012	-1.81934302819017	-1.82731978264371	0.0376840119903864	0.991491645451152	1
Merged-chr14-30095606-2	chr14	30095501	30095701	+	554.0	f0_c57.idr|f1_balb.idr	intron (NM_001083616, intron 28 of 46)	intron (NM_001083616, intron 28 of 46)	72968.0	NM_175343	218865.0	Mm.259916	NM_172264	ENSMUSG00000015970	Chdh	AU041472|D630034H06Rik	choline dehydrogenase	protein-coding	-0.286584867778199	-0.272812476124012	-0.0994158586010782	0.145662760922596	-0.285725484995258	-0.27179490284985	-0.276330489306087	0.44552290029606	0.578274243736416	0.812926328333001	1
Merged-chr15-78802985-4	chr15	78802873	78803073	+	903.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_130859)	promoter-TSS (NM_130859)	69.0	NM_130859	105844.0	Mm.17629	NM_130859	ENSMUSG00000033170	Card10	AI449026|Bimp1|Carma3	caspase recruitment domain family, member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-121567985-4	chr1	121567872	121568072	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025860)	promoter-TSS (NM_025860)	8.0	NM_025860	66942.0	Mm.44219	NM_025860	ENSMUSG00000001674	Ddx18	2310005B10Rik	DEAD (Asp-Glu-Ala-Asp) box polypeptide 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-86296906-2	chr1	86296806	86297006	+	603.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6315.0	NM_145222	227327.0	Mm.86467	NM_145222	ENSMUSG00000079445	B3gnt7	C330001H22Rik|beta-3GnT7	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-73125020-2	chr14	73124920	73125120	+	579.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17490.0	NM_001170694	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-52529945-2	chr18	52529845	52530045	+	806.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010728)	promoter-TSS (NM_010728)	-78.0	NM_001286182	16948.0	Mm.172	NM_010728	ENSMUSG00000024529	Lox	AI893619|TSC-160|rrg	lysyl oxidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-135095336-3	chr1	135095238	135095438	+	890.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033409, intron 1 of 17)	intron (NM_001033409, intron 1 of 17)	9938.0	NM_001033409	329252.0	Mm.279594	NM_001033409	ENSMUSG00000042793	Lgr6	A530037C04Rik|D830026M09	leucine-rich repeat-containing G protein-coupled receptor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-60142259-2	chr8	60142159	60142359	+	614.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	316610.0	NR_126087	75017.0	Mm.60775	NR_126087	ENSMUSG00000110406	4930470O06Rik	-	RIKEN cDNA 4930470O06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-8312660-2	chr12	8312560	8312760	+	998.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021429)	promoter-TSS (NM_021429)	-773.0	NM_021429	58240.0	Mm.309954	NM_021429	ENSMUSG00000020605	Hs1bp3	-	HCLS1 binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-33981312-3	chr17	33981203	33981403	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033305)	promoter-TSS (NR_033305)	-189.0	NR_033305	433100.0	Mm.380381	NM_001013793		AA388235	-	expressed sequence AA388235	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-27925439-3	chr15	27925297	27925497	+	900.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081302, intron 1 of 56)	intron (NM_001081302, intron 1 of 56)	100451.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81747781-1	chr15	81747681	81747881	+	588.0	f1_balb.idr	intron (NM_001081016, intron 1 of 22)	B3A|SINE|B2	2933.0	NM_001081016	20286.0	Mm.432075	NM_001081016	ENSMUSG00000022390	Zc3h7b	Gm627|Scrg3|Zc2h7b|mKIAA1031	zinc finger CCCH type containing 7B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-75792915-4	chr2	75792794	75792994	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39283.0	NM_172666	228061.0	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-14596192-4	chr1	14596097	14596297	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	159769.0	NM_001360810	17681.0	Mm.5820	NM_010827	ENSMUSG00000025930	Msc	MyoR|bHLHa22	musculin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-47186712-4	chr14	47186597	47186797	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008102, intron 1 of 5)	intron (NM_008102, intron 1 of 5)	2716.0	NM_008102	14528.0	Mm.10651	NM_008102	ENSMUSG00000037580	Gch1	GTP-CH|GTP-CH-I|GTPCH|Gch	GTP cyclohydrolase 1	protein-coding	4.21441990056269	3.76612206394407	3.46877190898373	3.17270103405016	4.03561428695498	4.21008523492963	3.66968427286844	3.38728641138853	0.202636943506868	0.692638355074027	0.99740158133691
Merged-chr15-34238685-4	chr15	34238549	34238749	+	970.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033521, intron 1 of 6)	CpG	623.0	NM_033521	114128.0	Mm.197518	NM_033521	ENSMUSG00000022257	Laptm4b	C330023P13Rik|LAPTM4beta	lysosomal-associated protein transmembrane 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128466777-3	chr2	128466672	128466872	+	645.944458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37421.0	NR_028590	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	1.8003147857688	2.60559748310651	0.922818558514008	1.91453516101047	0.872025863268962	1.23477283114419	0.928550859269607	2.21458304627188	-1.3014764419741	0.314458401563607	0.816464538199166
Merged-chr12-76371493-1	chr12	76371393	76371593	+	865.6666869999999	f0_balb.idr	intron (NM_178744, intron 1 of 1)	intron (NM_178744, intron 1 of 1)	1227.0	NM_178744	268564.0	Mm.77065	NM_178744	ENSMUSG00000033454	Zbtb1	9430077A12|AI256369|Bsg2|C430003J21Rik	zinc finger and BTB domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-36574342-3	chr5	36574249	36574449	+	761.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113362, intron 2 of 14)	MIRb|SINE|MIR	8048.0	NM_133910	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-73492231-3	chr2	73492088	73492288	+	843.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153138, intron 1 of 7)	Lx7|LINE|L1	-6435.0	NM_001289723	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5875305-4	chr19	5875193	5875393	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026169)	promoter-TSS (NM_026169)	-85.0	NM_026169	67457.0	Mm.202092	NM_026169	ENSMUSG00000024816	Frmd8	1200004M23Rik|2310035N23Rik|4931429L16Rik|AU018809	FERM domain containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132534058-2	chr4	132533958	132534158	+	758.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007512, intron 1 of 3)	intron (NM_007512, intron 1 of 3)	1356.0	NM_007512	11983.0	Mm.2171	NM_007512	ENSMUSG00000054428	Atpif1	Atpi|IF(1)|If1	ATPase inhibitory factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-21056719-3	chr5	21056620	21056820	+	946.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356591)	promoter-TSS (NM_001356591)	-809.0	NM_011203	19248.0	Mm.319117	NM_011203	ENSMUSG00000028771	Ptpn12	P19-PTP|PTP-P19|PTP-PEST|PTPG1	protein tyrosine phosphatase, non-receptor type 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-76630209-3	chr11	76630084	76630284	+	953.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42286.0	NM_177182	320522.0	Mm.131585	NM_177182	ENSMUSG00000044243	Bhlha9	A830053O21Rik|Fingerin	basic helix-loop-helix family, member a9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-87264142-10	chr17	87264022	87264222	+	764.783325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139295, intron 1 of 3)	intron (NM_139295, intron 1 of 3)	1825.0	NM_176808	193813.0	Mm.30251	NM_139295	ENSMUSG00000024150	Mcfd2	1810021C21Rik|F5f8d|Lman1ip|Sdnsf	multiple coagulation factor deficiency 2	protein-coding	2.51604720889175	3.18402986467083	3.00089519215048	1.6282864320262	2.78790745014559	1.4542789858198	2.94238487004817	2.03579671937407	-0.516641739008181	0.563747313798212	0.960367595640396
Merged-chr10-40229547-4	chr10	40229463	40229663	+	997.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042556, intron 7 of 9)	intron (NM_001042556, intron 7 of 9)	17416.0	NM_001042556	67239.0	Mm.11480	NM_023323	ENSMUSG00000038510	Rpf2	2810470K21Rik|AU040229|AU043242|Bxdc1	ribosome production factor 2 homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-97560314-1	chr15	97560214	97560414	+	545.0	f1_c57bl6.idr	Intergenic	MT2B2|LTR|ERVL	145508.0	NM_028003	71919.0	Mm.12255	NM_028003	ENSMUSG00000022466	Rpap3	2310042P20Rik|D15Ertd682e	RNA polymerase II associated protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-51790921-2	chr17	51790821	51791021	+	770.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357637, intron 5 of 10)	intron (NM_001357637, intron 5 of 10)	21133.0	NM_001163630	20230.0	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-64516612-4	chr18	64516524	64516724	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027350)	promoter-TSS (NM_027350)	-67.0	NM_001142950	70223.0	Mm.29192	NM_027350	ENSMUSG00000024587	Nars	3010001M15Rik|AA960128|ASNRS|C78150	asparaginyl-tRNA synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59390466-4	chr15	59390404	59390604	+	981.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164604, intron 2 of 4)	B1_Mm|SINE|Alu	16306.0	NM_001164604	68501.0	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-32575308-2	chr9	32575208	32575408	+	576.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33856.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80123651-2	chr10	80123551	80123751	+	839.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301853, intron 1 of 8)	intron (NM_001301853, intron 1 of 8)	7848.0	NM_001301854	20869.0	Mm.44231	NM_011492	ENSMUSG00000003068	Stk11	AA408040|Lkb1|Par-4|R75140	serine/threonine kinase 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-85941394-2	chr16	85941294	85941494	+	640.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40269.0	NM_011782	23794.0	Mm.112933	NM_011782	ENSMUSG00000022894	Adamts5	9530092O11Rik|ADAM-TS5|ADAMTS1|ADAMTS11|ADMP-2|AI481094|ASMP-2	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 5 (aggrecanase-2)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127354099-2	chr10	127354007	127354207	+	791.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2259.0	NM_008382	16326.0	Mm.3510	NM_008382	ENSMUSG00000047492	Inhbe	-	inhibin beta-E	protein-coding	1.33624745144311	1.64710686691951	1.33486243083607	1.87691074889203	0.767962129801377	0.81295921821781	1.34657667996272	0.786112799708389	-2.72785937148919	0.0587665502657715	0.358328349110683
Merged-chr13-113970975-3	chr13	113970875	113971075	+	802.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172595, intron 4 of 4)	intron (NM_172595, intron 4 of 4)	176467.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-105784579-4	chr12	105784476	105784676	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347440)	promoter-TSS (NM_001347440)	-121.0	NM_011112	18789.0	Mm.255877	NM_011112	ENSMUSG00000021111	Papola	Pap|PapIII|Plap	poly (A) polymerase alpha	protein-coding	3.27181420831904	3.1358168066343	3.64730176804888	2.63121546296628	4.57949793209327	4.28952514644049	4.09740471562474	4.50016760928235	1.65380634458885	0.000693296269399796	0.0145422528675852
Merged-chr16-30283155-2	chr16	30283055	30283255	+	955.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028973)	promoter-TSS (NM_028973)	99.0	NM_028973	74488.0	Mm.290677	NM_028973	ENSMUSG00000052316	Lrrc15	5430427N11Rik|LIB	leucine rich repeat containing 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-43248020-4	chr5	43247918	43248118	+	888.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177379, intron 3 of 10)	L3|LINE|CR1	-12664.0	NR_028417	665934.0	Mm.381491	NR_028417	ENSMUSG00000085720	Gm7854	EG665934	predicted gene 7854	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-61878039-2	chr10	61877939	61878139	+	616.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001304757, intron 16 of 37)	intron (NM_001304757, intron 16 of 37)	-94175.0	NM_207000	404634.0	Mm.272870	NM_207000	ENSMUSG00000020086	H2afy2	macroH2A2	H2A histone family, member Y2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-60097684-4	chr1	60097525	60097725	+	885.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_139150)	promoter-TSS (NM_139150)	282.0	NM_021312	57750.0	Mm.281079	NM_021312	ENSMUSG00000026019	Wdr12	4933402C23Rik|Ytm1|Ytm1p	WD repeat domain 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-55318885-4	chr15	55318792	55318992	+	998.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181277, intron 1 of 47)	intron (NM_181277, intron 1 of 47)	11142.0	NM_181277	12818.0	Mm.297859	NM_181277	ENSMUSG00000022371	Col14a1	5730412L22Rik|AW108078	collagen, type XIV, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-32596391-2	chr11	32596244	32596444	+	762.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 7 of 18)	(TCTG)n|Simple_repeat|Simple_repeat	-46211.0	NM_001271348	103583.0	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	0.929078273851684	2.13625530039466	0.544200887799091	0.526509451646574	0.940362493255898	2.31506467385821	0.549141282258931	0.529647615429105	0.275874669744745	0.913280122076197	0.998431161219273
Merged-chr8-83655361-1	chr8	83655261	83655461	+	567.0	f0_balb.idr	intron (NM_018771, intron 1 of 6)	B4|SINE|B4	2683.0	NM_018771	67903.0	Mm.20945	NM_018771	ENSMUSG00000019433	Gipc1	GIPC|Glut1CIP|Rgs19ip1|Semcap1|TIP-2|TaxIP2	GIPC PDZ domain containing family, member 1	protein-coding	1.87517492423916	1.02169457021195	2.14020532836869	1.66682586678954	2.05262368095819	1.02614995614976	1.006067956158	1.79452455615331	-0.515961073879063	0.685993111910472	0.996533206832645
Merged-chr4-126103850-4	chr4	126103753	126103953	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145827)	promoter-TSS (NM_001145827)	-104.0	NM_028800	74178.0	Mm.440269	NM_028800	ENSMUSG00000042608	Stk40	2310004N11Rik|AI428792	serine/threonine kinase 40	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32512235-2	chr2	32512135	32512335	+	671.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4A|LINE|L1	-23124.0	NM_153560	98952.0	Mm.4065	NM_153560	ENSMUSG00000039157	Fam102a	AI426465|C230093N12Rik|Eeig1	family with sequence similarity 102, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-44100944-2	chr1	44100844	44101044	+	648.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356297, intron 1 of 5)	intron (NM_001356297, intron 1 of 5)	1497.0	NM_029368	75623.0	Mm.348017	NM_029368	ENSMUSG00000026049	Tex30	1700029F09Rik|3110030D08Rik	testis expressed 30	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-38187678-4	chr3	38187576	38187776	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20443.0	NR_040541	71342.0	Mm.410782	NR_040541	ENSMUSG00000106002	5430434I15Rik	-	RIKEN cDNA 5430434I15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-84544905-4	chr9	84544813	84545013	+	901.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-229485.0	NR_040739	75253.0	Mm.401984	NR_040739	ENSMUSG00000099724	4930554C24Rik	-	RIKEN cDNA 4930554C24 gene	ncRNA	2.62559109257438	3.15528099605472	2.95420827933562	3.47171916994085	2.13447489407614	2.96978997250692	2.48136995768776	3.29753190584967	-0.519938978466187	0.454386201073554	0.919120493489568
Merged-chr17-73052094-1	chr17	73051994	73052194	+	655.0	f1_c57bl6.idr	Intergenic	Intergenic	-55891.0	NM_001177968	225010.0	Mm.329194	NM_001081071	ENSMUSG00000054469	Lclat1	AI181996|Agpat8|Alcat1|Gm91|Lycat	lysocardiolipin acyltransferase 1	protein-coding	1.64617463718554	0.927512851369565	0.505370828217776	0.85513021602253	0.660237288357078	1.23227898351651	0.507866240988115	0.498115419120889	-1.33662020504328	0.409465323429806	0.893461151064622
Merged-chr1-64243375-4	chr1	64243256	64243456	+	697.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-121967.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-84408228-4	chr12	84408164	84408364	+	995.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028377)	promoter-TSS (NM_028377)	765.0	NM_007647	12499.0	Mm.10211	NM_007647	ENSMUSG00000021236	Entpd5	AI196558|AI987697|Cd39l4|ER-UDPase|NTPDase-5|NTPDase5|Pcph|mNTPase	ectonucleoside triphosphate diphosphohydrolase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115566027-2	chr5	115565927	115566127	+	602.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172719, intron 1 of 57)	intron (NM_172719, intron 1 of 57)	764.0	NM_172719	231659.0	Mm.153014	NM_172719	ENSMUSG00000041638	Gcn1l1	4932409G22|AL022764|G431004K08Rik|GCN1L|Gcn1|mKIAA0219	GCN1 general control of amino-acid synthesis 1-like 1 (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-86652874-4	chr11	86652781	86652981	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356531, intron 5 of 11)	intron (NM_001356531, intron 5 of 11)	18394.0	NM_001356531	75909.0	Mm.390398	NM_029478	ENSMUSG00000018171	Vmp1	3110098I04Rik|4930579A11Rik|AI787464|Tango5|Tmem49|mir-21a|ni-2	vacuole membrane protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-30482517-2	chr5	30482417	30482617	+	991.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_029285, intron 3 of 3)	intron (NM_029285, intron 3 of 3)	16440.0	NM_029285	75434.0	Mm.332291	NM_029285	ENSMUSG00000029182	1700001C02Rik	1700047H18Rik	RIKEN cDNA 1700001C02 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-67234557-4	chr14	67234446	67234646	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360202)	promoter-TSS (NM_001360202)	-98.0	NM_001360202	13592.0	Mm.319947	NM_010095	ENSMUSG00000022053	Ebf2	D14Ggc1e|EBF-2|Mmot1|O/E-3|OE-3	early B cell factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-140619385-3	chr6	140619290	140619490	+	684.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3273.0	NM_178803	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-40985111-2	chr8	40985014	40985214	+	733.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026840, intron 3 of 5)	intron (NM_026840, intron 3 of 5)	-32354.0	NR_015457	78849.0	Mm.440930	NR_015457	ENSMUSG00000084960	B430010I23Rik	-	RIKEN cDNA B430010I23 gene	ncRNA	1.76414491640774	1.66933423050862	1.7282078678455	1.08900842174089	1.04809936996149	0.908895681466913	0.89022502515904	2.20076950669161	-0.508798736655353	0.69660897527632	0.997929106458421
Merged-chr17-31994331-2	chr17	31994231	31994431	+	641.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028902, intron 6 of 7)	L1MEd|LINE|L1	40177.0	NM_028902	74377.0	Mm.75856	NM_028902	ENSMUSG00000002076	Hsf2bp	4932437G14Rik	heat shock transcription factor 2 binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-95730017-2	chr16	95729917	95730117	+	586.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27610.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-59341810-4	chr3	59341697	59341897	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162884, intron 1 of 6)	Lx8b|LINE|L1	2459.0	NM_001162884	242050.0	Mm.228086	NM_001162884	ENSMUSG00000036334	Igsf10	6530405F15Rik|9030224D03|AA409708|AA536958|AI414626|Adlican2|CMF608	immunoglobulin superfamily, member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-57727858-4	chr10	57727759	57727959	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008863, intron 4 of 5)	intron (NM_008863, intron 4 of 5)	-57064.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-132391785-4	chr1	132391674	132391874	+	922.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178874)	promoter-TSS (NM_178874)	-388.0	NM_178874	68875.0	Mm.273785	NM_178874	ENSMUSG00000042066	Tmcc2	1110063G11Rik	transmembrane and coiled-coil domains 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30205820-4	chr2	30205741	30205941	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356474)	promoter-TSS (NM_001356474)	6.0	NM_001356475	70266.0	Mm.216089	NM_172404	ENSMUSG00000039648	Kyat1	2010009K05Rik|AI182306|Ccbl1|Gtk|Kat1|KatI	kynurenine aminotransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-107721191-2	chr13	107721091	107721291	+	635.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33794.0	NR_045900	72257.0	Mm.234155	NR_045900	ENSMUSG00000102000	1700006H21Rik	-	RIKEN cDNA 1700006H21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-23256434-4	chr11	23256345	23256545	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_134014, exon 2 of 26)	5' UTR (NM_134014, exon 2 of 26)	404.0	NM_134014	103573.0	Mm.217547	NM_134014	ENSMUSG00000020290	Xpo1	AA420417|Crm1|Exp1	exportin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-57746882-1	chr8	57746782	57746982	+	656.0	f0_balb.idr	Intergenic	L1_Mus2|LINE|L1	-93827.0	NM_144731	108150.0	Mm.62886	NM_144731	ENSMUSG00000031608	Galnt7	AI225872	polypeptide N-acetylgalactosaminyltransferase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-55491280-4	chr12	55491209	55491409	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010907, exon 3 of 6)	exon (NM_010907, exon 3 of 6)	1338.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-120263599-4	chr14	120263498	120263698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12071.0	NM_207515	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-101912779-2	chr12	101912679	101912879	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_028446, exon 1 of 21)	exon (NM_028446, exon 1 of 21)	112.0	NR_152255	100504056.0	Mm.416837	NR_152255		Gm20036	-	predicted gene, 20036	ncRNA	2.50995490776311	2.59852379089054	2.39084346618543	2.64398689542071	1.79838220914136	2.61758141599583	3.07006605840127	1.88272062789597	-0.166197733246476	0.839513591687969	0.998431161219273
Merged-chr14-67858949-4	chr14	67858859	67859059	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_105857)	TTS (NR_105857)	786.0	NR_105857	102465310.0		NR_105857	ENSMUSG00000098866	Mir6539	Gm27464|mir-6539|mmu-mir-6539	microRNA 6539	ncRNA	3.96032726535352	2.88037949801198	3.76845862976917	3.73664428801943	4.04123587326164	4.32853092284611	3.87309995676057	4.68329614994014	0.846321624655239	0.078386751580236	0.426458998848098
Merged-chr4-109214190-3	chr4	109214086	109214286	+	988.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4227.0	NM_001285895	108802.0	Mm.318248	NM_001033226	ENSMUSG00000028558	Calr4	4933403L16Rik|AU017583	calreticulin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116427685-3	chr11	116427561	116427761	+	742.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-6433.0	NM_176902	319370.0	Mm.258466	NM_176902	ENSMUSG00000050628	Ubald2	1110014K08Rik|D030012E24Rik|Fam100b	UBA-like domain containing 2	protein-coding	0.694713828005538	1.16306456904031	0.577387938442573	0.974746655262061	0.81907159963362	0.768899104029684	1.12608134378945	0.726842319230121	-0.0261809003545178	0.985974921654763	1
Merged-chr3-8913916-2	chr3	8913816	8914016	+	805.916687	f1_balb.idr|f1_c57bl6.idr	intron (NM_025434, intron 1 of 2)	ERVL-int|LTR|ERVL	9941.0	NM_025434	66230.0	Mm.38460	NM_025434	ENSMUSG00000040269	Mrps28	1500012D08Rik|AW061224	mitochondrial ribosomal protein S28	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-45243088-4	chr9	45242999	45243199	+	912.7333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198971, intron 3 of 4)	intron (NM_001198971, intron 3 of 4)	23608.0	NR_106054	102466803.0		NR_106054	ENSMUSG00000098361	Mir7086	Gm27643|mmu-mir-7086	microRNA 7086	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-154915520-4	chr4	154915419	154915619	+	900.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	12558.0	NM_178931	230979.0	Mm.215147	NM_178931	ENSMUSG00000042333	Tnfrsf14	Atar|HveA|Hvem|Tnfrs14	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	protein-coding	3.95695472990588	3.96049100811179	3.76861726865248	3.95894995190506	2.71760677180556	3.77650845186408	2.67268386565795	2.86791019452606	-1.27298324821022	0.021345426638356	0.187209377782892
Merged-chr7-132929939-4	chr7	132929831	132930031	+	842.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1211.0	NM_207302	360216.0	Mm.389984	NM_207302	ENSMUSG00000030967	Zranb1	9330160G10Rik|D7Wsu87e|Gm1956|Trabid	zinc finger, RAN-binding domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30683625-3	chr7	30683521	30683721	+	928.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-12016.0	NR_027848	74927.0	Mm.87326	NM_183108	ENSMUSG00000049761	Pmis2	1700071L20Rik|4930479M11Rik	Pmis2, sperm specific protein	ncRNA	0.906012165967368	1.74778113795766	1.54144050773295	0.934053568121164	1.85990786709501	1.43816267480184	2.36696400246994	1.34636486977943	1.53728145309367	0.211003479959671	0.700323931057359
Merged-chr3-36478134-2	chr3	36478034	36478234	+	981.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028183, intron 1 of 2)	intron (NM_028183, intron 1 of 2)	2197.0	NM_028183	72282.0	Mm.55317	NM_028183	ENSMUSG00000027713	1810062G17Rik	-	RIKEN cDNA 1810062G17 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118609497-4	chr9	118609414	118609614	+	911.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 1 of 27)	intron (NM_133721, intron 1 of 27)	2805.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-116482917-4	chr3	116482815	116483015	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25260.0	NM_025517	66368.0	Mm.251228	NM_025517	ENSMUSG00000000339	Rtca	2310009A18Rik|AI450277|RPC|Rtcd1	RNA 3'-terminal phosphate cyclase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-89270668-4	chr7	89270564	89270764	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360746, intron 4 of 14)	intron (NM_001360746, intron 4 of 14)	68123.0	NM_028343	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126773496-3	chr7	126773408	126773608	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024228, intron 9 of 9)	ORR1A4|LTR|ERVL-MaLR	-3467.0	NM_026875	66090.0	Mm.27114	NM_025347	ENSMUSG00000042675	Ypel3	0610043B10Rik|1190001G19Rik|Suap	yippee like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-67447016-3	chr17	67446943	67447143	+	766.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-92552.0	NM_001357625	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-31394084-4	chr3	31393970	31394170	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-83751.0	NM_172861	241919.0	Mm.285366	NM_172861	ENSMUSG00000069072	Slc7a14	A930013N06|BC061928	solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-107102988-4	chr11	107102804	107103004	+	895.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359590, intron 2 of 27)	intron (NM_001359590, intron 2 of 27)	29018.0	NM_176850	207165.0	Mm.343986	NM_176850	ENSMUSG00000040481	Bptf	9430093H17Rik|Falz	bromodomain PHD finger transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78321050-4	chr15	78320945	78321145	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4755.0	NM_001358854	12983.0	Mm.235324	NM_007780	ENSMUSG00000071713	Csf2rb	AI848964|AIC2B|Bc|CDw131|Csf2rb1|Csfgmrb|Il3r|Il3rb|Il3rb1|Il5rb	colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage)	protein-coding	4.25764105203112	3.74669741386087	4.75846425856224	4.32621984726654	4.09787592129175	4.56348003131049	4.12455908433488	4.94465106468008	0.201052586312019	0.634242206618929	0.982417279970648
Merged-chr6-124272503-2	chr6	124272403	124272603	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32148.0	NM_001170395	93671.0	Mm.37426	NM_053094	ENSMUSG00000008845	Cd163	CD163v2|CD163v3	CD163 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-69809849-4	chr13	69809749	69809949	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138596)	promoter-TSS (NM_138596)	-33.0	NM_138596	28077.0	Mm.52583	NM_138596	ENSMUSG00000021598	Med10	AA959813|AI385605|C78613|D13Wsu50e	mediator complex subunit 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-110313580-4	chr7	110313473	110313673	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177324, intron 37 of 40)	intron (NM_177324, intron 37 of 40)	91870.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-106716633-2	chr1	106716533	106716733	+	558.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-2343.0	NM_177410	12043.0	Mm.257460	NM_009741	ENSMUSG00000057329	Bcl2	AW986256|Bcl-2|C430015F12Rik|D630044D05Rik|D830018M01Rik	B cell leukemia/lymphoma 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-36009563-3	chr2	36009458	36009658	+	771.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29934.0	NM_029774	74410.0	Mm.21591	NM_028921	ENSMUSG00000026885	Ttll11	4932702F08Rik|4933424A20Rik|AU043211|D2Ertd624e	tubulin tyrosine ligase-like family, member 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-114143607-2	chr7	114143507	114143707	+	552.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25826.0	NM_025846	66922.0	Mm.276572	NM_025846	ENSMUSG00000055723	Rras2	2610016H24Rik|C86394|TC21	related RAS viral (r-ras) oncogene 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-79925476-4	chr10	79925384	79925584	+	989.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 3 of 4)	intron (NR_038088, intron 3 of 4)	-1559.0	NM_001288626	13496.0	Mm.301282	NM_007880	ENSMUSG00000019564	Arid3a	Bright|Dri1|Dril1	AT rich interactive domain 3A (BRIGHT-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-102735379-2	chr3	102735268	102735468	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040588)	promoter-TSS (NR_040588)	49.0	NR_040588	78491.0	Mm.243766	NR_040588	ENSMUSG00000086745	Tspan2os	2410057H14Rik	tetraspanin 2, opposite strand	ncRNA	1.51038969974989	2.10015642397611	0.351041159060596	0.79005563689344	0.317519117792211	0.371803921777287	0.354849104730428	0.339861910636806	-5.03582177879417	0.00343966936259356	0.0500839235587349
Merged-chr1-193875039-2	chr1	193874939	193875139	+	908.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR17B_Mm|LTR|ERVK	347720.0	NR_040477	74942.0	Mm.60689	NR_040477	ENSMUSG00000103692	4930503O07Rik	-	RIKEN cDNA 4930503O07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139331913-3	chr5	139331831	139332031	+	819.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6467.0	NM_172723	231821.0	Mm.297819	NM_172723	ENSMUSG00000056413	Adap1	4930431P11Rik|Centa1|GC1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-53119457-4	chr19	53119358	53119558	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20985.0	NM_001164099	27360.0	Mm.426080	NM_013758	ENSMUSG00000025026	Add3	AI463285|R75380	adducin 3 (gamma)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-135658382-4	chr7	135658212	135658412	+	897.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316681, intron 3 of 17)	intron (NM_001316681, intron 3 of 17)	-5998.0	NR_015548	67765.0	Mm.445272	NR_015548	ENSMUSG00000097471	5830432E09Rik	-	RIKEN cDNA 5830432E09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-172459952-1	chr2	172459852	172460052	+	544.0	f1_balb.idr	intron (NM_025542, intron 5 of 8)	intron (NM_025542, intron 5 of 8)	-1356.0	NM_001039560	654821.0	Mm.389337	NM_001039560	ENSMUSG00000074569	Gcnt7	A330041C17Rik|gnt	glucosaminyl (N-acetyl) transferase family member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-80178510-3	chr11	80178438	80178638	+	831.023804	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172133, exon 11 of 11)	3' UTR (NM_172133, exon 11 of 11)	-5334.0	NM_028019	71956.0	Mm.22985	NM_028019	ENSMUSG00000020707	Rnf135	0610037N03Rik|2410006N06Rik	ring finger protein 135	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-151920434-3	chr4	151920338	151920538	+	767.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13282.0	NM_172704	230935.0	Mm.21353	NM_172704	ENSMUSG00000039768	Dnajc11	E030019A03Rik	DnaJ heat shock protein family (Hsp40) member C11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-155383346-3	chr2	155383258	155383458	+	938.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178111, intron 1 of 3)	intron (NM_178111, intron 1 of 3)	1502.0	NM_178111	68728.0	Mm.293605	NM_178111	ENSMUSG00000038375	Trp53inp2	1110029F20Rik|Tp53inp2	transformation related protein 53 inducible nuclear protein 2	protein-coding	-0.294083384950798	-0.277963382818132	0.430175288204581	-0.287290034214969	-0.293070061983337	-0.276782190008417	0.44311158986884	-0.286577643912737	0.0410571026119648	0.987250810110592	1
Merged-chr13-54792977-2	chr13	54792877	54793077	+	857.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028841, intron 3 of 7)	intron (NM_028841, intron 3 of 7)	3572.0	NM_028841	74257.0	Mm.32883	NM_028841	ENSMUSG00000025875	Tspan17	2210021G21Rik|AI047581|Fbxo23|Tm4sf17	tetraspanin 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55695863-2	chr14	55695763	55695963	+	576.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10B|LTR|ERVL	-14046.0	NM_145705	28113.0	Mm.29346	NM_145705	ENSMUSG00000007589	Tinf2	AW552114|D14Wsu146e|Tin2	Terf1 (TRF1)-interacting nuclear factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-72866689-4	chr11	72866581	72866781	+	656.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001045536, exon 24 of 55)	exon (NM_001045536, exon 24 of 55)	70455.0	NM_001045536	195018.0	Mm.272030	NM_001045536	ENSMUSG00000055670	Zzef1	8430405D05Rik|BC051585|C130099L13Rik|C85424|NSPA|mKIAA0399	zinc finger, ZZ-type with EF hand domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-13898037-4	chr17	13897950	13898150	+	960.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151731, intron 31 of 33)	intron (NR_151731, intron 31 of 33)	-50323.0	NM_001122977	635895.0	Mm.388844	NM_001122977	ENSMUSG00000067941	Gm7168	EG635895	predicted gene 7168	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-142856508-2	chr1	142856408	142856608	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5b|LINE|L1	-784189.0	NM_020025	26878.0	Mm.285580	NM_020025	ENSMUSG00000033849	B3galt2	-	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-32673074-4	chr16	32672945	32673145	+	851.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347185)	promoter-TSS (NM_001347185)	-109.0	NM_001347185	51789.0	Mm.251115	NM_016788	ENSMUSG00000022791	Tnk2	Ack|Ack-1|Ack1|Cdgip|Pyk1	tyrosine kinase, non-receptor, 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-90569892-4	chr6	90569779	90569979	+	892.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027406, exon 10 of 23)	exon (NM_027406, exon 10 of 23)	19086.0	NM_027406	107747.0	Mm.30035	NM_027406	ENSMUSG00000030088	Aldh1l1	1810048F20Rik|FDH|Fthfd|Neut2	aldehyde dehydrogenase 1 family, member L1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-16538389-3	chr14	16538275	16538475	+	742.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289760, intron 4 of 9)	L1_Mus1|LINE|L1	37101.0	NM_011243	218772.0	Mm.259318	NM_011243	ENSMUSG00000017491	Rarb	A830025K23|Hap|Nr1b2	retinoic acid receptor, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-102983991-2	chr14	102983891	102984091	+	846.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1354.0	NM_177715	239217.0	Mm.246466	NM_177715	ENSMUSG00000098557	Kctd12	AU046135|AW538430|Pfet1|Pfetin	potassium channel tetramerisation domain containing 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-83879169-1	chr7	83879069	83879269	+	925.0	f1_c57bl6.idr	Intergenic	Intergenic	5172.0	NM_030705	80889.0	Mm.272998	NM_030705	ENSMUSG00000070462	Tlnrd1	AW061151|Mesdc1	talin rod domain containing 1	protein-coding	1.95888439305728	1.96065779625643	1.59589700939618	2.40676539498745	2.15025788515009	1.6572197864292	1.76900907618758	1.16371040073343	-0.772543649855679	0.460464270212117	0.920920511309258
Merged-chr19-5409546-2	chr19	5409446	5409646	+	685.666626	f1_balb.idr|f1_c57bl6.idr	intron (NR_027938, intron 1 of 3)	L1M4|LINE|L1	2731.0	NR_027938	74931.0	Mm.388511	NR_015545	ENSMUSG00000086938	4930481A15Rik	-	RIKEN cDNA 4930481A15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-105739226-4	chr7	105739111	105739311	+	909.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161724, intron 2 of 12)	intron (NM_001161724, intron 2 of 12)	-1826.0	NM_133951	101867.0	Mm.231400	NM_025897	ENSMUSG00000030888	Rrp8	1500003O22Rik|2900001K19Rik|AW538116	ribosomal RNA processing 8, methyltransferase, homolog (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-25321392-2	chr15	25321292	25321492	+	734.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	92372.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-69206228-4	chr2	69206130	69206330	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001305800)	promoter-TSS (NM_001305800)	-17.0	NM_001199123	66442.0	Mm.272969	NM_025565	ENSMUSG00000005233	Spc25	2600017H08Rik|2610205L13Rik|Spbc25	SPC25, NDC80 kinetochore complex component, homolog (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-98005525-4	chr3	98005441	98005641	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7997.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-4254895-3	chr18	4254774	4254974	+	783.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	89042.0	NM_026092	67328.0	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-172477071-3	chr2	172476993	172477193	+	563.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4539.0	NM_029608	76426.0	Mm.46148	NM_029608	ENSMUSG00000027505	Fam209	1700029J11Rik	family with sequence similarity 209	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-99833159-2	chr14	99833059	99833259	+	633.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	316637.0	NM_010636	16597.0	Mm.396499	NM_010636	ENSMUSG00000072294	Klf12	2700063E05Rik|AI225908|AI315654|AP-2rep|B130052C06Rik|D530033K05Rik	Kruppel-like factor 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-154256982-4	chr1	154256874	154257074	+	832.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040629)	promoter-TSS (NR_040629)	-68.0	NR_040629	78112.0	Mm.401935	NR_040629	ENSMUSG00000099933	4930452N14Rik	-	RIKEN cDNA 4930452N14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83121539-4	chr6	83121408	83121608	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016757)	promoter-TSS (NM_016757)	-47.0	NM_001083922	22377.0	Mm.1109	NM_016757	ENSMUSG00000030035	Wbp1	AI255152	WW domain binding protein 1	protein-coding	5.49216318088988	5.76720337441115	5.93399783579687	6.22519739326463	5.31879664956912	5.60094693693943	5.66762394904921	5.44047159572937	-0.41509663587484	0.117276884642495	0.537056512191089
Merged-chr3-103124287-2	chr3	103124187	103124387	+	557.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3269.0	NM_177857	329727.0	Mm.293641	NM_177857	ENSMUSG00000007379	Dennd2c	A930010I20Rik	DENN/MADD domain containing 2C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4594556-6	chr16	4594492	4594692	+	815.777771	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031184)	promoter-TSS (NM_031184)	-121.0	NM_031184	83396.0	Mm.134072	NM_031184	ENSMUSG00000014303	Glis2	Gli5|Klf16|Nkl	GLIS family zinc finger 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126677568-2	chr8	126677451	126677651	+	606.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-84115.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118469999-4	chr11	118469896	118470096	+	829.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER57-int|LTR|ERV1	-6836.0	NM_172573	217364.0	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100818726-3	chr7	100818630	100818830	+	898.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178764, intron 4 of 8)	intron (NM_178764, intron 4 of 8)	44683.0	NM_001358914	320100.0	Mm.40336	NM_177073	ENSMUSG00000008318	Relt	E430021K24Rik|Tnfrsf19l	RELT tumor necrosis factor receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-59881007-2	chr10	59880907	59881107	+	997.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019965, intron 1 of 8)	intron (NM_019965, intron 1 of 8)	1416.0	NM_019965	56709.0	Mm.103610	NM_019965	ENSMUSG00000020109	Dnajb12	Dj10|mDj10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-127582927-3	chr6	127582827	127583027	+	821.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033464, intron 1 of 6)	intron (NM_001033464, intron 1 of 6)	4952.0	NM_001033464	381812.0	Mm.296093	NM_001033464	ENSMUSG00000061414	Cracr2a	Efcab4b|Gm1073|Gm462	calcium release activated channel regulator 2A	protein-coding	0.95574277885934	1.64247119138677	0.551312941843947	0.730151468023203	0.699470661642576	0.784667259343457	0.757480275528057	1.02816510848701	-1.07061816619865	0.465943563588599	0.922774431844435
Merged-chr6-72517698-4	chr6	72517590	72517790	+	829.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26701.0	NM_007599	12332.0	Mm.18626	NM_007599	ENSMUSG00000056737	Capg	gCap39|mbh1	capping protein (actin filament), gelsolin-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43044885-4	chr4	43044794	43044994	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045567, intron 1 of 7)	intron (NR_045567, intron 1 of 7)	1326.0	NR_045567	230088.0	Mm.260162	NM_172691	ENSMUSG00000036002	Fam214b	B230312A22Rik	family with sequence similarity 214, member B	protein-coding	4.15753264627921	4.41407410373719	4.22094724132453	4.57464391467477	4.1433051572562	3.62225915173294	3.77334299252518	4.01085074731253	-0.592328830024975	0.16219364678592	0.623584503568937
Merged-chr14-74944845-3	chr14	74944745	74944945	+	923.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033439, intron 1 of 19)	intron (NM_001033439, intron 1 of 19)	3032.0	NM_001252132	380916.0	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-24504552-2	chr7	24504452	24504652	+	740.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_153112)	TTS (NM_153112)	-2535.0	NM_001290461	232969.0	Mm.181332	NM_146183	ENSMUSG00000064264	Zfp428	2410005H09Rik|AV271806|AW047854|Znf428	zinc finger protein 428	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-60895120-2	chr11	60895020	60895220	+	802.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-16082.0	NM_001168507	216821.0	Mm.28063	NM_173453	ENSMUSG00000043284	Tmem11	5730466P16Rik|AA409091	transmembrane protein 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-35939590-2	chr15	35939490	35939690	+	601.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1344.0	NM_053071	12864.0	Mm.548	NM_053071	ENSMUSG00000014313	Cox6c	-	cytochrome c oxidase subunit VIc	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31436733-2	chr14	31436633	31436833	+	910.1666869999999	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011894)	promoter-TSS (NM_011894)	-633.0	NM_011894	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-25090460-8	chr12	25090240	25090440	+	698.395813	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5752.0	NM_010496	15902.0	Mm.34871	NM_010496	ENSMUSG00000020644	Id2	AI255428|C78922|Idb2|bHLHb26	inhibitor of DNA binding 2	protein-coding	3.00769952958717	2.71072293308591	2.732785714773	3.57293419649676	2.72556967053027	1.83277241599095	1.49247203162499	3.036693370756	-1.15711138364047	0.155011167314766	0.610178472914225
Merged-chr18-61489757-4	chr18	61489633	61489833	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5126.0	NR_045419	442846.0	Mm.417648	NR_045419		A530050N04Rik	-	RIKEN cDNA A530050N04 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-84442577-3	chr18	84442480	84442680	+	713.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033341, intron 3 of 8)	intron (NM_001033341, intron 3 of 8)	146924.0	NM_001033341	240476.0	Mm.329575	NM_001033341	ENSMUSG00000048410	Zfp407	6430585N13Rik|Gm333|Gm334|Gm948|ZNF407	zinc finger protein 407	protein-coding	1.94334741824829	2.75663751847851	1.47138756086465	1.62601376322186	1.9595485092793	2.20091218574496	2.12609813538875	1.63366346356973	-0.175765448568249	0.857015652632377	0.998431161219273
Merged-chr6-39242880-2	chr6	39242780	39242980	+	967.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-36107.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-75368571-2	chr18	75368471	75368671	+	990.5	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001042660, exon 1 of 4)	5' UTR (NM_001042660, exon 1 of 4)	1206.0	NM_001042660	17131.0	Mm.34407	NM_008543	ENSMUSG00000025880	Smad7	Madh7	SMAD family member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-57815757-2	chr6	57815657	57815857	+	542.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146168, intron 1 of 4)	L1_Mus2|LINE|L1	9368.0	NM_146168	232023.0	Mm.24642	NM_146168	ENSMUSG00000037788	Vopp1	AW146242|Ecop	vesicular, overexpressed in cancer, prosurvival protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132809259-2	chr4	132809159	132809359	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-12895.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-33102207-3	chr19	33102115	33102315	+	965.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54897.0	NR_039552	100628575.0		NR_039552	ENSMUSG00000106278	Mir3970	mmu-mir-3970|mu-mir-3970	microRNA 3970	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-84189791-2	chr12	84189691	84189891	+	603.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163501, intron 1 of 12)	intron (NM_001163501, intron 1 of 12)	4224.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-37704312-2	chr2	37704212	37704412	+	961.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16028.0	NR_039590	100628597.0		NR_039590	ENSMUSG00000092958	Mir5128	mir-5128|mmu-mir-5128|mu-mir-5128	microRNA 5128	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-27140229-2	chr16	27140129	27140329	+	809.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-148577.0	NM_001285918	239789.0	Mm.326909	NM_001013761	ENSMUSG00000068428	Gmnc	Gemc1|Gm1778|Gm606	geminin coiled-coil domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-33934831-3	chr13	33934734	33934934	+	929.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001243192, intron 2 of 7)	intron (NM_001243192, intron 2 of 7)	-1198.0	NR_040707	68808.0	Mm.443347	NR_040707	ENSMUSG00000085457	1110046J04Rik	-	RIKEN cDNA 1110046J04 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-109238161-2	chr13	109238061	109238261	+	688.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011056, intron 3 of 16)	intron (NM_011056, intron 3 of 16)	-86583.0	NR_030644	100124489.0		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-49384455-3	chr17	49384366	49384566	+	960.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43898.0	NM_028464	56738.0	Mm.22256	NM_020042	ENSMUSG00000064120	Mocs1	3110045D15Rik|AI043170|AW536397	molybdenum cofactor synthesis 1	protein-coding	-1.84362945061595	-1.81329140012928	-1.67810947190254	-1.83000206547234	-1.84149977556685	-1.81130325271815	-1.67603257143677	-1.82865309133977	0.037684011990387	0.991491645451152	1
Merged-chr17-87971476-2	chr17	87971376	87971576	+	658.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3574.0	NM_010830	17688.0	Mm.18210	NM_010830	ENSMUSG00000005370	Msh6	AU044881|AW550279|GTBP|Gtmbp	mutS homolog 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-33314211-5	chr12	33314049	33314249	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033436, intron 1 of 7)	intron (NM_001033436, intron 1 of 7)	11634.0	NM_001033436	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-132342934-2	chr1	132342834	132343034	+	594.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25014.0	NM_001311108	68875.0	Mm.273785	NM_178874	ENSMUSG00000042066	Tmcc2	1110063G11Rik	transmembrane and coiled-coil domains 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-94725034-4	chr16	94724936	94725136	+	958.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	113617.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-10268563-1	chr1	10268463	10268663	+	565.0	f0_balb.idr	Intergenic	Intergenic	-35893.0	NM_001102430	211673.0	Mm.229141	NM_001102430	ENSMUSG00000067851	Arfgef1	ARFGEP1|BIG1|D130059B05Rik|D730028O18Rik|P200	ADP-ribosylation factor guanine nucleotide-exchange factor 1(brefeldin A-inhibited)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-150841334-4	chr2	150841228	150841428	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151505, intron 6 of 12)	B2_Mm2|SINE|B2	1242.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131293773-2	chr1	131293674	131293874	+	830.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081011, intron 21 of 22)	intron (NM_001081011, intron 21 of 22)	-14211.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	0.130919705533044	0.37071405820359	0.147108589367799	0.732233844306395	0.132437176159554	0.156619057055724	0.35141171251987	1.18036886950688	0.982031364897266	0.618065718710392	1
Merged-chr1-88223753-2	chr1	88223653	88223853	+	833.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1H|LTR|ERVL-MaLR	-3267.0	NM_001281466	100040766.0	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	Heatr7b1	maestro heat-like repeat family member 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-43855020-4	chr5	43854923	43855123	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13786.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	2.9428260322716	2.67545682302523	2.7303048105064	3.00636283045737	3.84270257135854	4.06018463974164	3.22161769716873	3.29885970622986	1.31725359273555	0.0256211715324699	0.213178097119677
Merged-chr14-55681965-4	chr14	55681852	55682052	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145705)	promoter-TSS (NM_145705)	-135.0	NM_145705	28113.0	Mm.29346	NM_145705	ENSMUSG00000007589	Tinf2	AW552114|D14Wsu146e|Tin2	Terf1 (TRF1)-interacting nuclear factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-97879392-4	chr3	97879236	97879436	+	715.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039376, intron 1 of 46)	intron (NM_001039376, intron 1 of 46)	9371.0	NM_001289702	83679.0	Mm.129840	NM_031401	ENSMUSG00000038170	Pde4dip	4732458A06Rik|9430063L05Rik|C87016|D130016K21Rik|D3Bwg1078e|Usmg4|mKIAA0454	phosphodiesterase 4D interacting protein (myomegalin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-65128887-2	chr6	65128787	65128987	+	772.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019455, intron 4 of 5)	intron (NM_019455, intron 4 of 5)	15843.0	NM_019455	54486.0	Mm.410688	NM_019455	ENSMUSG00000029919	Hpgds	H-PGDS|Ptgds2	hematopoietic prostaglandin D synthase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-37093167-3	chr9	37093065	37093265	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029838, intron 1 of 12)	intron (NM_001029838, intron 1 of 12)	54157.0	NM_148950	208076.0	Mm.260335	NM_148950	ENSMUSG00000035934	Pknox2	D230005H23Rik|Prep2	Pbx/knotted 1 homeobox 2	protein-coding	3.37612671500129	2.12914170876993	3.09020056595181	3.3101968303612	3.89153085814	4.32992279413466	3.90717091625624	4.50503703341069	1.62880144115418	0.00254469559240935	0.0401023525189063
Merged-chr13-93013174-4	chr13	93013076	93013276	+	835.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60128.0	NR_036451	100502942.0	Mm.441946	NM_177623	ENSMUSG00000114382	Gm4814	C920025J10|EG218444	predicted gene 4814	ncRNA	2.38606981087182	2.05258321540168	1.35922579053692	2.75666741117105	1.85203140927624	2.22503891609082	2.51066135789306	2.61500731108318	0.193714124962038	0.833406743659369	0.998431161219273
Merged-chr11-75646234-1	chr11	75646134	75646334	+	721.0	f1_balb.idr	intron (NM_008916, intron 8 of 11)	B2_Mm2|SINE|B2	-5275.0	NM_008659	17913.0	Mm.234502	NM_008659	ENSMUSG00000017774	Myo1c	C80397|MMIb|MYO1E|NMI|mm1beta|myr2	myosin IC	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16431093-2	chr7	16430993	16431193	+	610.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198631, intron 12 of 13)	intron (NM_198631, intron 12 of 13)	-21686.0	NM_026938	69094.0	Mm.29633	NM_026938	ENSMUSG00000019158	Tmem160	1810008O21Rik	transmembrane protein 160	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-89339995-4	chr13	89339890	89340090	+	942.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-200646.0	NM_013500	12950.0	Mm.266790	NM_013500	ENSMUSG00000021613	Hapln1	BB099155|CLP|Crtl1|Crtl1l|LP|LP-1	hyaluronan and proteoglycan link protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71162486-2	chr17	71162386	71162586	+	639.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CTATA)n|Simple_repeat|Simple_repeat	-21046.0	NM_001357791	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19820152-2	chr7	19820052	19820252	+	793.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_033601, exon 2 of 9)	exon (NM_033601, exon 2 of 9)	2603.0	NM_033601	12051.0	Mm.439658	NM_033601	ENSMUSG00000053175	Bcl3	AI528691|Bcl-3	B cell leukemia/lymphoma 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-35032971-2	chr7	35032871	35033071	+	628.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008820, intron 12 of 14)	intron (NM_008820, intron 12 of 14)	23595.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-51854118-2	chr17	51854019	51854219	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20829.0	NM_001163632	20230.0	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	0.681093482465914	1.88065182805717	0.719705083665975	0.705495564119276	1.33602571728174	1.8980175473696	1.717273752588	0.708003280563234	1.18080721846111	0.436800280844794	0.908362185228875
Merged-chr6-121337208-2	chr6	121337108	121337308	+	561.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144512, intron 14 of 14)	intron (NM_144512, intron 14 of 14)	-5868.0	NM_001347433	14411.0	Mm.274506	NM_133661	ENSMUSG00000030109	Slc6a12	BGT1|GAT-2|GAT2|Gabt2	solute carrier family 6 (neurotransmitter transporter, betaine/GABA), member 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-108316864-3	chr13	108316781	108316981	+	704.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178683, intron 1 of 10)	intron (NM_178683, intron 1 of 10)	544.0	NM_178683	218581.0	Mm.32318	NM_178683	ENSMUSG00000021697	Depdc1b	9830132O03|AW260467|XTP1	DEP domain containing 1B	protein-coding	1.18255129135024	1.31780368901942	2.43253129767439	2.19057372813225	0.969050798519781	1.05273026253496	2.37079135836934	2.00494666909075	-0.371784630290064	0.759608341050227	0.998431161219273
Merged-chr7-44925708-2	chr7	44925608	44925808	+	670.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077264, intron 1 of 22)	B3|SINE|B2	3782.0	NM_007458	11771.0	Mm.6877	NM_007458	ENSMUSG00000060279	Ap2a1	Adtaa	adaptor-related protein complex 2, alpha 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-25267169-4	chr15	25267058	25267258	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	146606.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96221526-4	chr3	96221432	96221632	+	993.275024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175662)	promoter-TSS (NM_175662)	460.0	NM_178214	319190.0	Mm.439791	NM_178214	ENSMUSG00000068854	Hist2h2be	AV127319|H2b-613|T25626	histone cluster 2, H2be	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-31802851-3	chr18	31802757	31802957	+	765.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1200.0	NM_028866	74320.0	Mm.277705	NM_028866	ENSMUSG00000024400	Wdr33	1110001N06Rik|2310011G05Rik|2810021O11Rik|8430413N20Rik|WDC146	WD repeat domain 33	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53440869-3	chr4	53440774	53440974	+	981.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133891, intron 1 of 15)	CpG	461.0	NM_133891	100434.0	Mm.482207	NM_133891	ENSMUSG00000028412	Slc44a1	2210409B22Rik|4833416H08Rik|AW547365|CHTL1|CTL1|Cdw92	solute carrier family 44, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-47736764-1	chr9	47736664	47736864	+	667.0	f1_balb.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	81444.0	NR_046048	100038460.0	Mm.447649	NR_046048		Gm10677	-	predicted gene 10677	ncRNA	-0.501770069579746	-0.488402458490407	-0.49276911552254	-0.0474518388813764	-0.500932202172585	0.279369901338772	-0.491804961667683	-0.495555999300152	1.0700902053477	0.695361974404403	1
Merged-chr1-164781917-2	chr1	164781817	164782017	+	591.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	IMPB_01|Satellite|Satellite	-14746.0	NM_019759	56429.0	Mm.28935	NM_019759	ENSMUSG00000026574	Dpt	1810032B19Rik|5033416F05Rik|EQ-1|Eq1	dermatopontin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-41761026-2	chr4	41760926	41761126	+	548.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163401, intron 1 of 12)	intron (NM_001163401, intron 1 of 12)	583.0	NM_001172054	16157.0	Mm.193451	NM_010549	ENSMUSG00000073889	Il11ra1	AI314697|GP130|Il-11ra|Il11ra|Il11ra2|NR1	interleukin 11 receptor, alpha chain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-109892214-2	chr9	109892114	109892314	+	573.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_007658, exon 15 of 15)	exon (NM_007658, exon 15 of 15)	2571.0	NR_106057	102465660.0		NR_106057	ENSMUSG00000098490	Mir7089	Gm27418|mmu-mir-7089	microRNA 7089	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-21777274-4	chr19	21777191	21777391	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1049.0	NM_001033759	83921.0	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-13149096-2	chr8	13148996	13149196	+	560.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	-10065.0	NM_001317353	16783.0	Mm.16716	NM_010684	ENSMUSG00000031447	Lamp1	CD107a|LGP-120|LGP-A|Lamp-1|P2B|Perk	lysosomal-associated membrane protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-67318105-3	chr17	67318044	67318244	+	935.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	36315.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-5104440-3	chr6	5104361	5104561	+	926.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181595, intron 7 of 15)	intron (NM_181595, intron 7 of 15)	89485.0	NM_011134	18979.0	Mm.237657	NM_011134	ENSMUSG00000002588	Pon1	Pon	paraoxonase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-29431062-2	chr17	29430962	29431162	+	824.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-59983.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-111955842-2	chr11	111955742	111955942	+	593.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	755514.0	NR_024085	217294.0	Mm.297761	NM_146031	ENSMUSG00000041674	BC006965	-	cDNA sequence BC006965	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33381340-3	chr16	33381243	33381443	+	970.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358570)	promoter-TSS (NM_001358570)	41.0	NM_001358570	22661.0	Mm.392667	NM_011749	ENSMUSG00000022811	Zfp148	2210405J08Rik|AI480666|AW045217|BERF-1|BFCOL1|ZBP-89|Znf148	zinc finger protein 148	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-125332203-2	chr5	125332151	125332351	+	592.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205083, intron 1 of 10)	intron (NM_001205083, intron 1 of 10)	8843.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	1.08990922437106	0.991910582549112	0.955362512223094	1.05119534305023	0.604579821122516	1.26718378006381	0.963476121022315	0.615580735546345	-0.63216695550172	0.67320868740297	1
Merged-chr16-87841243-2	chr16	87841143	87841343	+	746.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68028.0	NR_155304	105246151.0	Mm.449986	NR_155304		4930590A17Rik	-	RIKEN cDNA 4930590A17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-66974974-4	chr9	66974885	66975085	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030717, intron 1 of 5)	CpG	499.0	NM_030717	80907.0	Mm.157882	NM_030717	ENSMUSG00000032370	Lactb	LACT-1|Lact1|Mrpl56	lactamase, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-23187897-4	chr1	23187743	23187943	+	917.8583369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-84426.0	NR_029533	387225.0		NR_029533	ENSMUSG00000065405	Mir30a	Mirn30a|mir-30a|mmu-mir-30a	microRNA 30a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117373325-2	chr8	117373225	117373425	+	575.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028941, intron 1 of 20)	RSINE1|SINE|B4	24155.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-101779227-4	chr2	101779127	101779327	+	989.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355625, intron 1 of 8)	intron (NM_001355625, intron 1 of 8)	18480.0	NM_175181	72446.0	Mm.24138	NM_175181	ENSMUSG00000032841	Prr5l	2600010E01Rik|4833411O04Rik|Protor-2|Protor2	proline rich 5 like	protein-coding	2.42806738770738	2.09706386718837	1.27362802892634	2.05624313936369	1.51761567172401	1.06169902212111	1.79485295142214	1.01879372991657	-1.92526241057423	0.0999623255206642	0.491804803825969
Merged-chr10-88441414-4	chr10	88441310	88441510	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004164, intron 19 of 20)	L1MB5|LINE|L1	-18177.0	NM_011517	20962.0	Mm.297977	NM_011517	ENSMUSG00000020059	Sycp3	Cor1|Scp3	synaptonemal complex protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-118746254-5	chr2	118746194	118746394	+	748.659973	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001301269, exon 1 of 1)	exon (NM_001301269, exon 1 of 1)	536.0	NM_001301269	100043272.0	Mm.398072	NM_001301269	ENSMUSG00000074918	Inafm2	5430417L22Rik	InaF motif containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-64246742-3	chr1	64246644	64246844	+	637.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-125355.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-96321011-1	chr9	96320911	96321111	+	595.0	f1_c57bl6.idr	3' UTR (NM_001184710, exon 10 of 10)	3' UTR (NM_001184710, exon 10 of 10)	42704.0	NM_001357213	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	0.00804223365394574	-0.803121407730792	-0.80666912541797	-0.809412059385777	-0.6568013246961	-0.800391055652351	-0.805885922800254	-0.808932514613257	-2.38326504989711	0.416015484878042	1
Merged-chr4-149654914-2	chr4	149654814	149655014	+	804.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_105990)	TTS (NR_105990)	653.0	NR_105990	102465983.0		NR_105990	ENSMUSG00000098580	Mir7023	Gm27912|mmu-mir-7023	microRNA 7023	ncRNA	-0.413270832553205	0.248879758316469	-0.403519686790488	-0.4071766335812	-0.41236239857827	0.260274020124072	-0.402476173372258	-0.406537021983025	0.0394809277679939	0.98817139586833	1
Merged-chr10-81542618-2	chr10	81542518	81542718	+	557.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010301, intron 1 of 6)	intron (NM_010301, intron 1 of 6)	2428.0	NM_010301	14672.0	Mm.260925	NM_010301	ENSMUSG00000034781	Gna11	Dsk7|E430025L19	guanine nucleotide binding protein, alpha 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-24211258-2	chr9	24211158	24211358	+	723.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175678, intron 3 of 9)	GA-rich|Low_complexity|Low_complexity	113240.0	NM_175678	319239.0	Mm.130824	NM_175678	ENSMUSG00000043659	Npsr1	9330128H10Rik|GPRA|Gpr154|MVTR|PGR14|VRR1	neuropeptide S receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116218861-2	chr11	116218765	116218965	+	738.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_004853, intron 6 of 6)	intron (NR_004853, intron 6 of 6)	2863.0	NR_004853	69681.0	Mm.33677	NR_004853	ENSMUSG00000092300	Cdk3-ps	2310050O10Rik|Cdk3	cyclin-dependent kinase 3, pseudogene	pseudo	-0.29270653168092	-0.256218348314016	-5.6989377551055e-05	-0.276756481644351	-0.290269316440069	1.27607471951952	0.00665971543967307	-0.27513474672646	4.01057910446713	0.0430431528979859	0.297369528869502
Merged-chr4-73948538-2	chr4	73948438	73948638	+	602.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027981, intron 1 of 1)	L1_Mus4|LINE|L1	2308.0	NM_027981	71886.0	Mm.158769	NM_027104	ENSMUSG00000028396	2310002L09Rik	2310003M01Rik|AV083437	RIKEN cDNA 2310002L09 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-6357587-4	chr4	6357474	6357674	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8106.0	NM_016807	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	1.57997090106178	0.874681221071229	1.73851775272263	1.06837281124158	0.813047141595561	0.879275505620466	2.31086680516891	1.99349924236085	0.934873720511415	0.491775659487847	0.934778891402914
Merged-chr1-15008737-2	chr1	15008637	15008837	+	632.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-89875.0	NM_177781	277328.0	Mm.186329	NM_177781	ENSMUSG00000032769	Trpa1	Anktm1|TRPA1b	transient receptor potential cation channel, subfamily A, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43042491-2	chr4	43042401	43042601	+	847.583374	f1_balb.idr|f1_c57bl6.idr	intron (NR_045567, intron 1 of 7)	B1_Mus1|SINE|Alu	-2200.0	NM_001253354	230088.0	Mm.260162	NM_172691	ENSMUSG00000036002	Fam214b	B230312A22Rik	family with sequence similarity 214, member B	protein-coding	0.360559618867062	0.0891002692303437	0.0820781425580033	0.849823821824461	0.068862249148006	0.0906761961401387	0.915189669542403	0.0775796782845426	-0.187065774126485	0.930314167610383	1
Merged-chr10-96464808-4	chr10	96464663	96464863	+	715.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-152238.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101060708-4	chr7	101060628	101060828	+	943.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-48047.0	NM_001146010	207278.0	Mm.263041	NM_199012	ENSMUSG00000030691	Fchsd2	BC034086|R74866|Sh3md3|mKIAA0769	FCH and double SH3 domains 2	protein-coding	2.13579593015673	3.1114638860335	1.26520124720969	1.74924086522063	3.05771421497282	3.83025950897477	2.50510340920789	1.23203843163124	1.28400961072851	0.190946625157618	0.669546561020494
Merged-chr4-133170735-2	chr4	133170634	133170834	+	763.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153423, intron 1 of 8)	intron (NM_153423, intron 1 of 8)	-24921.0	NR_105984	102466215.0		NR_105984	ENSMUSG00000099202	Mir7017	Gm27945|mmu-mir-7017	microRNA 7017	ncRNA	2.68443238311618	4.0608250155589	3.364053268859	2.73068188780791	3.05394585696241	1.57462091130154	3.05179392803395	1.97874102160904	-1.2912671323224	0.0975479160787801	0.485500510417535
Merged-chr6-124940311-2	chr6	124940211	124940411	+	573.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8923.0	NM_001170341	30853.0	Mm.29737	NM_145385	ENSMUSG00000030120	Mlf2	AI256856|AU018944|C77284	myeloid leukemia factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4216204-4	chr19	4216094	4216294	+	849.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310038, intron 2 of 3)	intron (NM_001310038, intron 2 of 3)	1805.0	NM_001310039	56708.0	Mm.347919	NM_019952	ENSMUSG00000040663	Clcf1	BSF-3|Bsf3|CLC|NNT-1	cardiotrophin-like cytokine factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118120010-2	chr11	118119910	118120110	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001167746, intron 10 of 80)	intron (NM_001167746, intron 10 of 80)	9209.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-75065989-2	chr8	75065889	75066089	+	885.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_001136259, intron 13 of 15)	intron (NM_001136259, intron 13 of 15)	-27629.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-119612392-2	chr4	119612292	119612492	+	759.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357177, intron 6 of 12)	intron (NM_001357177, intron 6 of 12)	-25340.0	NM_008190	14915.0	Mm.2614	NM_008190	ENSMUSG00000023247	Guca2a	Guca2	guanylate cyclase activator 2a (guanylin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-6569319-4	chr15	6569199	6569399	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10548.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19817624-4	chr7	19817536	19817736	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033601, intron 2 of 8)	intron (NM_033601, intron 2 of 8)	5119.0	NM_033601	12051.0	Mm.439658	NM_033601	ENSMUSG00000053175	Bcl3	AI528691|Bcl-3	B cell leukemia/lymphoma 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-54059251-4	chr10	54059108	54059308	+	627.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008548, intron 2 of 12)	intron (NM_008548, intron 2 of 12)	16588.0	NM_008548	17155.0	Mm.117294	NM_008548	ENSMUSG00000003746	Man1a	Man1a1|PCR1	mannosidase 1, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71488548-2	chr17	71488422	71488622	+	782.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-13179.0	NM_028887	74355.0	Mm.194450	NM_028887	ENSMUSG00000024054	Smchd1	4931400A14Rik|AW554188|MommeD1|mKIAA0650	SMC hinge domain containing 1	protein-coding	0.794861980183162	0.182072798085278	0.735416968592397	0.470633191095859	0.165078843217886	0.183411575413493	0.177444050788901	0.475239474358087	-2.41823364375946	0.23465213052706	1
Merged-chr15-67095552-1	chr15	67095452	67095652	+	646.0	f0_balb.idr	Intergenic	Intergenic	81330.0	NM_009177	20442.0	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-109218315-3	chr7	109218234	109218434	+	590.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43127.0	NM_001302205	109594.0	Mm.360145	NM_057173	ENSMUSG00000036111	Lmo1	Rbtn-1|Rbtn1|Ttg1	LIM domain only 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-86190704-2	chr15	86190604	86190804	+	788.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4563.0	NM_145475	223753.0	Mm.222685	NM_145475	ENSMUSG00000035891	Cerk	AI848610|D330016D08Rik|mKIAA1646	ceramide kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-87302348-1	chr2	87302248	87302448	+	566.0	f1_c57bl6.idr	Intergenic	L1_Mus1|LINE|L1	-6416.0	NM_207632	404328.0	Mm.377942	NM_207632	ENSMUSG00000083706	Olfr1118	MOR264-22|Olfr1118-ps	olfactory receptor 1118	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-17813015-2	chr14	17812915	17813115	+	573.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113417, intron 1 of 9)	L1M5|LINE|L1	152055.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55254680-4	chr19	55254573	55254773	+	855.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027976, intron 1 of 21)	intron (NM_027976, intron 1 of 21)	1304.0	NM_027976	433256.0	Mm.292056	NM_027976	ENSMUSG00000024981	Acsl5	1700030F05Rik|ACS2|ACS5|Facl5	acyl-CoA synthetase long-chain family member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122264458-4	chr8	122264342	122264542	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17699.0	NM_009569	22761.0	Mm.3105	NM_009569	ENSMUSG00000049577	Zfpm1	FOG|Fog1	zinc finger protein, multitype 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-8580017-4	chr11	8579910	8580110	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 3 of 30)	intron (NM_001083587, intron 3 of 30)	84525.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-48928608-4	chr7	48928536	48928736	+	909.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30437.0	NM_001111016	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-53385709-4	chr5	53385582	53385782	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	118576.0	NM_001145433	66278.0	Mm.27900	NM_001145433	ENSMUSG00000061461	Smim20	1110067B18Rik|1810013D10Rik|N28078	small integral membrane protein 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-18672245-1	chr19	18672145	18672345	+	1000.0	f1_c57bl6.idr	intron (NM_026120, intron 1 of 7)	intron (NM_026120, intron 1 of 7)	1465.0	NM_026120	67383.0	Mm.306602	NM_026120	ENSMUSG00000024726	Carnmt1	2410127L17Rik	carnosine N-methyltransferase 1	protein-coding	1.55342687715559	0.68323002885663	0.670706430614021	1.39163511092586	1.2149775097559	0.686028460857264	1.65136727732647	0.662635977286138	-0.0517860155675907	0.974276355960348	0.998431161219273
Merged-chr16-24655338-1	chr16	24655238	24655438	+	699.0	f0_balb.idr	intron (NM_178665, intron 5 of 12)	intron (NM_178665, intron 5 of 12)	-66517.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-59213504-1	chr11	59213404	59213604	+	1000.0	f1_c57bl6.idr	5' UTR (NM_001130408, exon 2 of 5)	5' UTR (NM_001130408, exon 2 of 5)	5143.0	NM_024210	67862.0	Mm.358708	NM_024210	ENSMUSG00000020441	2310033P09Rik	Mmtag2	RIKEN cDNA 2310033P09 gene	protein-coding	-1.58994551673671	-1.55912852307891	-1.56844783632235	-1.57610299769523	-1.18549093183599	-1.55710898902261	-1.56633814807757	-1.57473272746952	1.78703309985663	0.610309988231842	1
Merged-chr8-3515430-4	chr8	3515320	3515520	+	971.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015801)	promoter-TSS (NM_015801)	36.0	NM_015801	50767.0	Mm.23085	NM_015801	ENSMUSG00000004565	Pnpla6	AI661849|MSws|Nte	patatin-like phospholipase domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-136133561-2	chr1	136133461	136133661	+	900.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039472, intron 1 of 34)	intron (NM_001039472, intron 1 of 34)	2171.0	NR_153829	16565.0	Mm.276135	NM_019962	ENSMUSG00000041642	Kif21b	2610511N21Rik|mKIAA0449	kinesin family member 21B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-116131937-4	chr6	116131831	116132031	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177412, intron 3 of 5)	MIR|SINE|MIR	61443.0	NM_177412	330401.0	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-24049435-4	chr11	24049335	24049535	+	746.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28621.0	NM_016707	14025.0	Mm.53687	NM_016707	ENSMUSG00000000861	Bcl11a	2810047E18Rik|BCL-11A|Ctip1|D930021L15Rik|Evi9|Evi9a|Evi9b|Evi9c|mKIAA1809	B cell CLL/lymphoma 11A (zinc finger protein)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80455882-6	chr7	80455804	80456004	+	796.622192	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042527, intron 21 of 21)	intron (NM_001042527, intron 21 of 21)	-50468.0	NM_001081454	18550.0	Mm.5241	NM_011046	ENSMUSG00000030530	Furin	9130404I01Rik|Fur|PACE|Pcsk3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-104375435-4	chr8	104375333	104375533	+	978.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153582, intron 1 of 3)	intron (NM_153582, intron 1 of 3)	20374.0	NM_153582	97487.0	Mm.29658	NM_153582	ENSMUSG00000096188	Cmtm4	Cklfsf4|D19397|Gm9853	CKLF-like MARVEL transmembrane domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-134745919-2	chr1	134745819	134746019	+	803.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355726, intron 7 of 8)	intron (NM_001355726, intron 7 of 8)	36619.0	NM_001355726	20980.0	Mm.5102	NM_009307	ENSMUSG00000026452	Syt2	IP4BP|R74640|mKIAA4194|sytII	synaptotagmin II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71216266-6	chr17	71216170	71216370	+	828.055542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357791, intron 2 of 19)	intron (NM_001357791, intron 2 of 19)	11616.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	-1.3681463318974	-1.33624156493372	-1.34650167276047	-0.80669348975676	-1.36769697821496	-1.33401815676661	-1.34417900924365	-1.3534210303531	-2.3580830592467	0.49586638340111	1
Merged-chr6-72349813-4	chr6	72349730	72349930	+	934.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_026696, exon 4 of 4)	3' UTR (NM_026696, exon 4 of 4)	2513.0	NM_026696	68364.0	Mm.52711	NM_026696	ENSMUSG00000058706	0610030E20Rik	1500031N04Rik|2810411C16Rik|AI461894	RIKEN cDNA 0610030E20 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-62282675-2	chr4	62282586	62282786	+	1000.0	f0_balb.idr|f0_c57.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	-3743.0	NM_025286	20530.0	Mm.292539	NM_025286	ENSMUSG00000066152	Slc31a2	AI604396|CTR2	solute carrier family 31, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-40311302-4	chr8	40311192	40311392	+	887.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030110, intron 1 of 14)	ORR1E|LTR|ERVL-MaLR	3241.0	NM_030110	78506.0	Mm.169893	NM_030110	ENSMUSG00000039478	Micu3	2900075B16Rik|Efha2	mitochondrial calcium uptake family, member 3	protein-coding	3.409432263066	2.83422382251094	2.73970892956978	3.13536932913398	2.84289746718055	2.21377558529412	2.76098892034369	3.22614930921713	-0.447573177009365	0.508236735571235	0.943448842710213
Merged-chr7-123019873-3	chr7	123019767	123019967	+	807.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB4|LINE|L1	49303.0	NM_175023	19647.0	Mm.4480	NM_011247	ENSMUSG00000030779	Rbbp6	4933422O15Rik|AI316869|BB233631|C030034J04Rik|C77662|P2P-R|PACT	retinoblastoma binding protein 6, ubiquitin ligase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-118855258-1	chr7	118855158	118855358	+	822.0	f0_balb.idr	promoter-TSS (NM_001081446)	promoter-TSS (NM_001081446)	355.0	NM_001168220	66356.0	Mm.482278	NM_023197	ENSMUSG00000030980	Knop1	2310008H09Rik|Tsg118	lysine rich nucleolar protein 1	protein-coding	0.90082656146557	0.602789304029462	1.84975949165675	0.5782721142844	1.53627730814921	1.04669269277518	0.818228169317553	0.580172793750463	-0.248111297795928	0.873064599327097	0.998431161219273
Merged-chr12-104418637-4	chr12	104418517	104418717	+	828.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11909.0	NM_009252	20716.0	Mm.482074	NM_009252	ENSMUSG00000021091	Serpina3n	Spi2-2|Spi2.2|Spi2/eb.4	serine (or cysteine) peptidase inhibitor, clade A, member 3N	protein-coding	3.6564383926808	3.42199316112118	2.50387740048167	4.02119787897601	3.35632046765899	2.43916177391242	1.91261313988105	3.05175500218104	-1.13829823251844	0.10260259828505	0.498460377995516
Merged-chr2-35130968-2	chr2	35130868	35131068	+	845.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_012018, intron 11 of 43)	B4A|SINE|B4	-1266.0	NM_001290635	26920.0	Mm.231332	NM_012018	ENSMUSG00000057110	Cntrl	6720467O09Rik|AA968343|Cep1|Cep110|IB3/5|Ma2a8|b2b1468.1Clo|b2b1468Clo	centriolin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127289956-4	chr10	127289840	127290040	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033072)	promoter-TSS (NM_033072)	-853.0	NM_007837	13198.0	Mm.110220	NM_007837	ENSMUSG00000025408	Ddit3	CHOP-10|CHOP10|chop|gadd153	DNA-damage inducible transcript 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-113469282-4	chr6	113469181	113469381	+	942.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145826, intron 14 of 14)	intron (NM_145826, intron 14 of 14)	-2174.0	NM_178942	171095.0	Mm.213397	NM_134159	ENSMUSG00000030281	Il17rc	1110025H02Rik|Gm19850|IL-17RC|IL17-RC|IL17-RL|Il17rl	interleukin 17 receptor C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-4684208-2	chr7	4684108	4684308	+	764.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_024172, intron 2 of 7)	intron (NM_024172, intron 2 of 7)	773.0	NM_001360629	66245.0	Mm.6803	NM_024172	ENSMUSG00000063802	Hspbp1	1500019G21Rik	HSPA (heat shock 70kDa) binding protein, cytoplasmic cochaperone 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-59020536-3	chr6	59020435	59020635	+	889.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153574, intron 1 of 17)	AmnSINE1|SINE|Deu	3967.0	NM_153574	58909.0	Mm.28813	NM_153574	ENSMUSG00000037709	Fam13a	AI462012|D430015B01Rik|FAM13A1|Precm1	family with sequence similarity 13, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44444622-4	chr9	44444511	44444711	+	909.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1|SINE|Alu	-3743.0	NM_001033469	382074.0	Mm.335103	NM_001033469	ENSMUSG00000074397	Foxr1	Foxn5|Gm1115	forkhead box R1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-10009589-4	chr3	10009493	10009693	+	996.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2992.0	NM_001272097	16592.0	Mm.741	NM_010634	ENSMUSG00000027533	Fabp5	E-FABP|Fabpe|Klbp|PA-FABP|mal1	fatty acid binding protein 5, epidermal	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-34520382-4	chr19	34520280	34520480	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111100, intron 3 of 9)	intron (NM_001111100, intron 3 of 9)	7094.0	NM_001111100	16889.0	Mm.157545	NM_021460	ENSMUSG00000024781	Lipa	AA960673|Lal|Lip-1|Lip1	lysosomal acid lipase A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-8252215-4	chr19	8252094	8252294	+	909.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	-33294.0	NM_001347426	236293.0	Mm.440581	NM_172776	ENSMUSG00000075044	Slc22a29	D630002G06Rik	solute carrier family 22. member 29	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152605702-1	chr1	152605602	152605802	+	860.0	f0_balb.idr	intron (NM_001346119, intron 2 of 17)	B4A|SINE|B4	19515.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-6430113-4	chr17	6430012	6430212	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009342)	promoter-TSS (NM_009342)	0.0	NM_009342	21648.0	Mm.1948	NM_009342	ENSMUSG00000096255	Dynlt1b	AGS2|Dynlt1|Tctex-1|Tctex1	dynein light chain Tctex-type 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-102665924-3	chr13	102665756	102665956	+	858.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27691.0	NM_001360519	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-161999543-4	chr1	161999454	161999654	+	892.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038619, intron 20 of 20)	intron (NM_001038619, intron 20 of 20)	-5415.0	NR_040562	72753.0	Mm.452125	NR_040562	ENSMUSG00000090260	2810442N19Rik	-	RIKEN cDNA 2810442N19 gene	ncRNA	2.41462209372071	1.67249392589623	2.52195927084143	2.99021469684818	2.00857438127341	1.6832500001374	2.02243533240465	2.80567237563942	-0.612627850334246	0.493673225672919	0.935679785535167
Merged-chr2-8674151-3	chr2	8674048	8674248	+	695.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-515367.0	NR_038180	73438.0	Mm.23558	NR_038180	ENSMUSG00000085580	1700061F12Rik	-	RIKEN cDNA 1700061F12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-157310860-1	chr1	157310760	157310960	+	620.0	f1_balb.idr	intron (NM_177644, intron 1 of 17)	ORR1C2|LTR|ERVL-MaLR	-101492.0	NR_027984	69953.0	Mm.286863	NM_027274	ENSMUSG00000049881	2810025M15Rik	AI429618	RIKEN cDNA 2810025M15 gene	ncRNA	-0.12952802648231	0.413260930991121	-0.122362513119745	0.139466423226535	-0.128869988061928	0.32098702084788	-0.121582352829111	-0.124603835787011	-0.894367390357305	0.707198415644702	1
Merged-chr17-35813878-1	chr17	35813778	35813978	+	1000.0	f0_balb.idr	Intergenic	Intergenic	-7835.0	NM_133662	15937.0	Mm.25613	NM_133662	ENSMUSG00000003541	Ier3	AI663993|IEX-1|cI-3|gly96	immediate early response 3	protein-coding	2.00764823718262	2.01041759938515	2.29031091716133	2.74624000792059	1.12090287837743	1.68907810243831	1.43055138871129	1.89397591799598	-2.06074590533783	0.0448313376597468	0.304578929355403
Merged-chr10-59748989-1	chr10	59748889	59749089	+	663.0	f0_balb.idr	intron (NM_001359267, intron 4 of 11)	L1MEf|LINE|L1	46426.0	NM_001291443	216001.0	Mm.27199	NM_144822	ENSMUSG00000020111	Micu1	C730016L05Rik|Calc|Cbara1	mitochondrial calcium uptake 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-121654003-2	chr8	121653903	121654103	+	817.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2070.0	NM_080855	142682.0	Mm.103202	NM_080855	ENSMUSG00000061410	Zcchc14	AA792890|BDG29	zinc finger, CCHC domain containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-37871492-4	chr6	37871399	37871599	+	974.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145076, intron 1 of 18)	CpG	688.0	NM_145076	21848.0	Mm.41063	NM_145076	ENSMUSG00000029833	Trim24	A130082H20Rik|AI447469|D430004I05Rik|TIF1|TIF1-alpha|TIF1alpha|Tif1a	tripartite motif-containing 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141161611-4	chr4	141161509	141161709	+	963.8250119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172518, intron 1 of 9)	intron (NM_172518, intron 1 of 9)	13687.0	NM_172518	213499.0	Mm.28865	NM_172518	ENSMUSG00000028920	Fbxo42	6720460I06Rik|mKIAA1332	F-box protein 42	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-84072850-2	chr3	84072750	84072950	+	587.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32689.0	NM_172681	229473.0	Mm.28838	NM_172681	ENSMUSG00000033767	Tmem131l	D930015E06Rik|Kiaa0922|mKIAA0922	transmembrane 131 like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-179624623-2	chr1	179624523	179624723	+	552.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146105, intron 10 of 10)	RSINE1|SINE|B4	-43608.0	NM_178653	109232.0	Mm.136458	NM_178653	ENSMUSG00000038936	Sccpdh	AW214504|C330023F11Rik	saccharopine dehydrogenase (putative)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24651595-2	chr17	24651495	24651695	+	710.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1290.0	NM_023055	65962.0	Mm.21587	NM_023055	ENSMUSG00000002504	Slc9a3r2	0610011L07Rik|1200011K07Rik|2010007A20Rik|E3karp|NHERF-2|Nherf2|Octs2|Sip-1|Sip1|Sryip1|Tka-1	solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-37667581-2	chr13	37667481	37667681	+	638.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-158457.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-84325193-4	chr3	84325113	84325313	+	785.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-20438.0	NM_001271726	80890.0	Mm.44876	NM_030706	ENSMUSG00000027993	Trim2	mKIAA0517|narf	tripartite motif-containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-12262766-2	chr12	12262666	12262866	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001146119, intron 1 of 11)	intron (NM_001146119, intron 1 of 11)	627.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-8970795-2	chr3	8970695	8970895	+	767.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	-6649.0	NM_001025261	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-34340557-4	chr19	34340449	34340649	+	874.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F|LTR|ERVL-MaLR	49890.0	NM_001146708	14102.0	Mm.1626	NM_007987	ENSMUSG00000024778	Fas	AI196731|APO1|APT1|CD95|TNFR6|Tnfrsf6|lpr	Fas (TNF receptor superfamily member 6)	protein-coding	2.5396765453066	2.29077722247109	1.95483837517076	2.59715642059236	1.70446318889803	2.0289707589028	1.96836005328246	2.04827613517577	-1.16355181368136	0.18702232735293	0.664545252931279
Merged-chr6-102171032-1	chr6	102170932	102171132	+	541.0	f1_balb.idr	intron (NM_008779, intron 19 of 21)	(CATAC)n|Simple_repeat|Simple_repeat	-95068.0	NR_131018	75893.0	Mm.2968	NR_131017	ENSMUSG00000107563	4930587E11Rik	4930523E13Rik|Gm44188	RIKEN cDNA 4930587E11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-90237971-4	chr9	90237854	90238054	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 3 of 12)	intron (NM_194334, intron 3 of 12)	32815.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-125489026-3	chr8	125488918	125489118	+	864.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357372, intron 3 of 21)	intron (NM_001357372, intron 3 of 21)	3815.0	NM_001081337	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	3.43221410521833	3.28468164422112	2.71587733155186	3.41136299689751	3.39900490632756	2.3048141881274	3.79295097114442	3.00373382134508	-0.00169252885561971	0.997878574898822	0.999433508400807
Merged-chr9-65564339-2	chr9	65564239	65564439	+	643.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153119, intron 2 of 5)	intron (NM_153119, intron 2 of 5)	15748.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	-1.27480050717774	-0.604729833679879	-1.25573295904267	-1.26493563944758	-1.27428069156472	-1.24210192204986	-1.25319678955844	-1.26328836405502	-2.6632876257018	0.439827081912762	1
Merged-chr10-5805012-2	chr10	5804912	5805112	+	713.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_025995, intron 1 of 4)	CpG	453.0	NM_025995	67141.0	Mm.197520	NM_025995	ENSMUSG00000019773	Fbxo5	2510044I10Rik|C85305|Emi1|Fbxo31	F-box protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-107477939-2	chr11	107477839	107478039	+	720.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-1589.0	NM_025894	66997.0	Mm.491171	NM_025894	ENSMUSG00000020720	Psmd12	1500002F15Rik|AI480719|P55	proteasome (prosome, macropain) 26S subunit, non-ATPase, 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-49742626-2	chr2	49742526	49742726	+	580.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008449, intron 19 of 25)	intron (NM_008449, intron 19 of 25)	-45060.0	NM_027990	71897.0	Mm.41381	NM_027990	ENSMUSG00000026765	Lypd6b	2310010M24Rik|AW049525	LY6/PLAUR domain containing 6B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-97920547-2	chr4	97920447	97920647	+	775.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_010905, intron 2 of 10)	intron (NM_010905, intron 2 of 10)	142921.0	NM_010905	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-85747542-2	chr9	85747442	85747642	+	621.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175371, intron 1 of 27)	ORR1D1|LTR|ERVL-MaLR	1792.0	NM_001081282	108837.0	Mm.22315	NM_175371	ENSMUSG00000035941	Ibtk	5430411K16Rik|AA409502|BTKI|mKIAA1417	inhibitor of Bruton agammaglobulinemia tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-63703138-2	chr13	63703038	63703238	+	721.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_126476, intron 4 of 4)	intron (NR_126476, intron 4 of 4)	31160.0	NR_126476	75522.0	Mm.54259	NR_126476	ENSMUSG00000113825	1700024I08Rik	-	RIKEN cDNA 1700024I08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-3716268-2	chr8	3716168	3716368	+	840.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_029465, exon 9 of 9)	3' UTR (NM_029465, exon 9 of 9)	4383.0	NM_029465	75863.0	Mm.109183	NM_029465	ENSMUSG00000074491	Clec4g	4930572L20Rik	C-type lectin domain family 4, member g	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-33430946-2	chr2	33430846	33431046	+	935.142822	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085507, intron 1 of 2)	CpG	378.0	NM_001085507	241311.0	Mm.296512	NM_001085507	ENSMUSG00000068966	Zbtb34	Gm349|mKIAA1993	zinc finger and BTB domain containing 34	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-73489444-4	chr13	73489329	73489529	+	769.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145376, intron 3 of 13)	intron (NM_145376, intron 3 of 13)	22046.0	NM_145376	210992.0	Mm.284649	NM_145376	ENSMUSG00000021608	Lpcat1	2900035H07Rik|Aytl2|BB137372|BC005662|C87117|LPCAT|rd11	lysophosphatidylcholine acyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-120917668-4	chr7	120917562	120917762	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025298)	promoter-TSS (NM_025298)	-82.0	NM_025298	26939.0	Mm.193632	NM_025298	ENSMUSG00000030880	Polr3e	RPC5|Sin	polymerase (RNA) III (DNA directed) polypeptide E	protein-coding	3.28426551753539	3.60835997497926	4.64582271002095	4.53066803036449	3.396065357446	3.89838104179503	4.32910926748927	2.81656354400199	-0.581090366957222	0.294185365059956	0.798191705447
Merged-chr11-107307173-2	chr11	107307073	107307273	+	854.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 4 of 9)	intron (NR_153311, intron 4 of 9)	-117792.0	NM_001161329	68979.0	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141462808-2	chr7	141462708	141462908	+	874.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_152219, intron 1 of 1)	intron (NR_152219, intron 1 of 1)	1096.0	NR_152220	100126795.0	Mm.386851	NR_152219	ENSMUSG00000073787	Gm10575	-	predicted gene 10575	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-10394025-2	chr17	10393925	10394125	+	797.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62191.0	NR_077239	319750.0	Mm.383485	NR_077237	ENSMUSG00000089633	A230009B12Rik	-	RIKEN cDNA A230009B12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-19515713-1	chr3	19515613	19515813	+	552.0	f0_balb.idr	intron (NM_025489, intron 1 of 4)	intron (NM_025489, intron 1 of 4)	7118.0	NM_025489	66326.0	Mm.45615	NM_025489	ENSMUSG00000027606	Dnajc5b	1700008A05Rik	DnaJ heat shock protein family (Hsp40) member C5 beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-113016989-2	chr12	113016889	113017089	+	618.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081170, intron 1 of 23)	intron (NM_001081170, intron 1 of 23)	2481.0	NM_001291444	217893.0	Mm.35754	NM_198165	ENSMUSG00000021143	Pacs2	6720425G15Rik|AW208651|AW489976|E230011J22|Pacs1l|mKIAA0602	phosphofurin acidic cluster sorting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-52474579-4	chr12	52474475	52474675	+	782.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6034.0	NR_136881	102638611.0	Mm.363799	NR_136881	ENSMUSG00000111982	Gm35135	-	predicted gene, 35135	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-38910209-2	chr6	38910109	38910309	+	785.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8777.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-127815005-4	chr8	127814926	127815126	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	463199.0	NR_105822	102465212.0		NR_105822	ENSMUSG00000099326	Mir21c	Gm28013|mmu-mir-21c	microRNA 21c	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106788495-4	chr11	106788372	106788572	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177088)	promoter-TSS (NM_177088)	22.0	NM_007840	13207.0	Mm.491096	NM_007840	ENSMUSG00000020719	Ddx5	2600009A06Rik|G17P1|HUMP68|Hlr1|p68	DEAD (Asp-Glu-Ala-Asp) box polypeptide 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-152132427-2	chr4	152132327	152132527	+	709.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_207688, intron 3 of 10)	intron (NM_207688, intron 3 of 10)	-3502.0	NM_019585	56226.0	Mm.264215	NM_019585	ENSMUSG00000028943	Espn	je	espin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-165738087-4	chr1	165737981	165738181	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25677.0	NR_149310	433375.0	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-130004371-2	chr5	130004271	130004471	+	955.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1322.0	NM_001357027	110006.0	Mm.3317	NM_010368	ENSMUSG00000025534	Gusb	AI747421|Gur|Gus|Gus-r|Gus-s|Gus-t|Gus-u|Gut|asd|g	glucuronidase, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-44817971-4	chr2	44817869	44818069	+	858.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172662, intron 3 of 10)	ORR1B1|LTR|ERVL-MaLR	43653.0	NM_172662	227835.0	Mm.314312	NM_172662	ENSMUSG00000036890	Gtdc1	E330008O22Rik	glycosyltransferase-like domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-82670045-2	chr10	82669945	82670145	+	673.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029102, intron 3 of 9)	B1F1|SINE|Alu	20605.0	NM_029102	74782.0	Mm.191281	NM_029102	ENSMUSG00000020251	Glt8d2	1110021D20Rik	glycosyltransferase 8 domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-108619406-2	chr4	108619306	108619506	+	713.833374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177045)	promoter-TSS (NM_177045)	-550.0	NM_177045	319965.0	Mm.151129	NM_177045	ENSMUSG00000028582	Cc2d1b	A830039B04Rik|Freud2	coiled-coil and C2 domain containing 1B	protein-coding	-2.18292257394068	-2.15545247547656	-2.03304972317742	-2.17058342868585	-2.18099422382073	-2.1536522739386	-2.16187909550322	-2.16936197735154	-0.683654500252594	0.846597994014493	1
Merged-chr17-17845406-1	chr17	17845306	17845506	+	544.0	f0_c57.idr	intron (NM_008215, intron 4 of 4)	B3|SINE|B2	9782.0	NM_008215	15116.0	Mm.255701	NM_008215	ENSMUSG00000003665	Has1	HAS	hyaluronan synthase 1	protein-coding	1.30205317311019	1.50899317086928	3.40239759358531	0.869880319426396	1.31617962265153	1.26494105935819	2.63395270393018	1.16680926649965	-0.946857944671172	0.417086555906519	0.897222495742637
Merged-chr15-63652553-5	chr15	63652392	63652592	+	901.366699	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	156247.0	NM_031378	83492.0	Mm.335619	NM_031378	ENSMUSG00000079025	Gsdmc	Gsdmc1|Mlze	gasdermin C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-47327217-3	chr18	47327115	47327315	+	800.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311097, intron 1 of 17)	intron (NM_001311097, intron 1 of 17)	41653.0	NM_018744	20358.0	Mm.40909	NM_018744	ENSMUSG00000019647	Sema6a	A730020P05Rik|AI851735|Sema6A-1|Semaq|VIa	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-135256598-2	chr1	135256498	135256698	+	607.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007921, intron 4 of 8)	intron (NM_007921, intron 4 of 8)	1874.0	NM_001163131	13710.0	Mm.441439	NM_007921	ENSMUSG00000003051	Elf3	ESE-1|ESX|jen	E74-like factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-60046759-1	chr2	60046659	60046859	+	737.0	f0_balb.idr	intron (NM_001001182, intron 2 of 35)	L1MD2|LINE|L1	78981.0	NM_001001182	407823.0	Mm.228071	NM_001001182	ENSMUSG00000026987	Baz2b	5830435C13Rik|BC053917|D2Ertd794e	bromodomain adjacent to zinc finger domain, 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-15729012-4	chr6	15728902	15729102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175088, intron 2 of 4)	intron (NM_175088, intron 2 of 4)	8341.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-29847960-4	chr16	29847859	29848059	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	131165.0	NR_037689	328657.0	Mm.425982	NM_001033403		Gm1968	-	predicted gene 1968	ncRNA	3.92848982029404	4.52812314828865	3.71066142643948	3.89364160642102	4.36038375305625	3.86664579902136	3.65473301799648	3.91300018843105	-0.0888120573093195	0.847133270971801	0.998431161219273
Merged-chr7-16094784-2	chr7	16094684	16094884	+	630.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001099277, intron 13 of 15)	intron (NM_001099277, intron 13 of 15)	-3796.0	NM_025898	108124.0	Mm.104540	NM_025898	ENSMUSG00000006024	Napa	1500039N14Rik|AW209189|RA81|SNAP-alpha|SNAPA|SNARE|a-SNAP|hyh	N-ethylmaleimide sensitive fusion protein attachment protein alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-71004708-2	chr2	71004608	71004808	+	867.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145524, intron 2 of 9)	Lx8|LINE|L1	13666.0	NM_001110512	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-60491234-2	chr9	60491134	60491334	+	948.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001040426, intron 2 of 17)	intron (NM_001040426, intron 2 of 17)	19801.0	NM_001040426	207596.0	Mm.28791	NM_172444	ENSMUSG00000032289	Thsd4	ADAMTSL-6|ADAMTSL6|AI585901|Adamtsl4|B230114P05Rik	thrombospondin, type I, domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-43541022-4	chr10	43540935	43541135	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026411)	promoter-TSS (NM_026411)	-17.0	NM_026411	67851.0	Mm.209953	NM_026411	ENSMUSG00000019797	1700021F05Rik	-	RIKEN cDNA 1700021F05 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-27625502-4	chr15	27625407	27625607	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013792, intron 1 of 6)	intron (NM_001013792, intron 1 of 6)	5186.0	NM_001013792	432940.0	Mm.309164	NM_001013792	ENSMUSG00000046034	Otulin	C79097|Fam105b|m3Sapc|m7-1Sapc	OTU deubiquitinase with linear linkage specificity	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-115805988-2	chr6	115805888	115806088	+	586.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_025958)	TTS (NM_025958)	2115.0	NR_028546	100217451.0	Mm.484708	NR_028546	ENSMUSG00000064563	Snora7a	MBI-141	small nucleolar RNA, H/ACA box 7A	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-55166899-3	chr9	55166803	55167003	+	743.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346657, intron 2 of 11)	intron (NM_001346657, intron 2 of 11)	16820.0	NM_001346658	109161.0	Mm.207894	NM_180600	ENSMUSG00000032307	Ube2q2	3010021M21Rik	ubiquitin-conjugating enzyme E2Q family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119086333-4	chr11	119086240	119086440	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007625)	promoter-TSS (NM_007625)	-103.0	NM_007625	12418.0	Mm.268070	NM_007625	ENSMUSG00000039989	Cbx4	MPc2|PC2	chromobox 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-102987631-3	chr15	102987528	102987728	+	864.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2911.0	NM_010466	15426.0	Mm.6167	NM_010466	ENSMUSG00000001657	Hoxc8	D130011F21Rik|Hox-3.1	homeobox C8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-135488264-2	chr7	135488164	135488364	+	681.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40390.0	NM_178669	212070.0	Mm.39721	NM_178669	ENSMUSG00000050866	Clrn3	AI649392|Tmem12	clarin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-181245203-4	chr1	181245097	181245297	+	903.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33219.0	NM_145514	226757.0	Mm.289082	NM_145514	ENSMUSG00000038733	Wdr26	1600024A01Rik|AA693241|AI447817|AU044014|C77982|Gid7	WD repeat domain 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-23717116-2	chr17	23717016	23717216	+	626.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9220.0	NM_023058	268930.0	Mm.182193	NM_023058	ENSMUSG00000023908	Pkmyt1	6230424P17|AW209059|Myt1	protein kinase, membrane associated tyrosine/threonine 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-21024718-3	chr5	21024617	21024817	+	951.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356591, intron 1 of 16)	intron (NM_001356591, intron 1 of 16)	10530.0	NM_001356592	19248.0	Mm.319117	NM_011203	ENSMUSG00000028771	Ptpn12	P19-PTP|PTP-P19|PTP-PEST|PTPG1	protein tyrosine phosphatase, non-receptor type 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-120588024-2	chr5	120587924	120588124	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029408)	promoter-TSS (NM_029408)	589.0	NM_145853	252972.0	Mm.114054	NM_145853	ENSMUSG00000032741	Tpcn1	5730403B01Rik|Tpc1|mKIAA1169	two pore channel 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-38145676-2	chr18	38145576	38145776	+	715.700012	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	64086.0	NM_029357	75599.0	Mm.36560	NM_029357	ENSMUSG00000051375	Pcdh1	2010005A06Rik|AI585920	protocadherin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-8427834-4	chr6	8427667	8427867	+	990.892822	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001302353, exon 5 of 5)	3' UTR (NM_001302353, exon 5 of 5)	81394.0	NR_040452	320312.0	Mm.374890	NR_040452	ENSMUSG00000087305	A430035B10Rik	2810488G03Rik	RIKEN cDNA A430035B10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-44588145-2	chr6	44588045	44588245	+	796.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	-471916.0	NM_001004357	66797.0	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-25322253-4	chr15	25322145	25322345	+	979.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	91519.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-144197240-2	chr2	144197140	144197340	+	888.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7950.0	NR_136884	433481.0	Mm.330630	NR_136884	ENSMUSG00000074758	Gm5535	EG433481	predicted gene 5535	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-3001192-5	chr9	3001104	3001304	+	854.8666380000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GSAT_MM|Satellite|Satellite	37539.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-113650557-4	chr5	113650412	113650612	+	978.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008153)	promoter-TSS (NM_008153)	-122.0	NM_008153	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-180701252-4	chr2	180701135	180701335	+	933.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291432, intron 1 of 5)	intron (NM_001291432, intron 1 of 5)	867.0	NM_011805	23856.0	Mm.253836	NM_011805	ENSMUSG00000038914	Dido1	6720461J16Rik|D130048F08Rik|DATF-1|DIO-1|Datf1|dido	death inducer-obliterator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-9747817-2	chr1	9747720	9747920	+	1000.0	f0_balb.idr|f0_c57.idr	non-coding (NR_040462, exon 1 of 4)	non-coding (NR_040462, exon 1 of 4)	172.0	NR_040462	73331.0	Mm.460470	NR_040462		1700034P13Rik	-	RIKEN cDNA 1700034P13 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-77826435-2	chr9	77826335	77826535	+	641.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	71900.0	NM_010295	14629.0	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	0.740754738826959	0.499739318745618	1.15315243240655	0.786734175545085	0.747667554057275	0.501419325186076	0.950937788267514	0.791510122196057	-0.351837521956332	0.822911053211976	1
Merged-chr2-48336261-2	chr2	48336161	48336361	+	897.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B2|LTR|ERVK	-477848.0	NM_007396	11480.0	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-158406098-2	chr2	158405998	158406198	+	760.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA6|LINE|L1	-3755.0	NM_001291137	228850.0	Mm.398185	NM_177227	ENSMUSG00000027652	Ralgapb	AI507211|B230339M05Rik|p170	Ral GTPase activating protein, beta subunit (non-catalytic)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-75100568-3	chr9	75100449	75100649	+	581.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010864, intron 1 of 40)	intron (NM_010864, intron 1 of 40)	29343.0	NM_010864	17918.0	Mm.3645	NM_010864	ENSMUSG00000034593	Myo5a	9630007J19Rik|AI413174|AI661011|Dbv|MVa|Myo5|MyoVA|Sev-1|d|d-120J|flail|flr	myosin VA	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118739667-3	chr11	118739565	118739765	+	855.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024931, intron 2 of 14)	MLT1I|LTR|ERVL-MaLR	21376.0	NM_001285438	52897.0	Mm.341103	NM_001024931	ENSMUSG00000025576	Rbfox3	Fox-3|Hrnbp3|NeuN|Neuna60	RNA binding protein, fox-1 homolog (C. elegans) 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-106031776-4	chr12	106031676	106031876	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029843, intron 1 of 13)	intron (NM_001029843, intron 1 of 13)	21513.0	NM_001029843	22367.0	Mm.2981	NM_011705	ENSMUSG00000021115	Vrk1	51PK	vaccinia related kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-43920673-3	chr19	43920587	43920787	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028029, intron 1 of 15)	intron (NM_028029, intron 1 of 15)	19511.0	NM_028029	71972.0	Mm.159024	NM_028029	ENSMUSG00000025195	Dnmbp	2410003L07Rik|2410003M15Rik|TUBA	dynamin binding protein	protein-coding	0.494053040303262	0.108188998782271	0.818360862100659	0.0957793066471159	0.0880646758025263	0.89055386892351	0.102747331510666	0.0967288111793061	-0.359849771515839	0.866088691839291	1
Merged-chr6-108449113-3	chr6	108449051	108449251	+	959.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 44 of 61)	intron (NM_010585, intron 44 of 61)	-40592.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	3.02343985135756	2.59515046327388	2.65093189886838	3.52258376716707	3.31997020648636	2.61448759021044	2.67195978591199	3.53956497459707	0.168772958225504	0.8007661091699	0.998431161219273
Merged-chr8-83332548-4	chr8	83332445	83332645	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001170691)	promoter-TSS (NM_001170691)	-59.0	NM_178736	244548.0	Mm.38762	NM_178736	ENSMUSG00000035151	Elmod2	9830169G11Rik	ELMO/CED-12 domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-51553556-4	chr10	51553452	51553652	+	934.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36908.0	NM_029894	77296.0	Mm.30588	NM_029894	ENSMUSG00000019909	Fam162b	9430073N08Rik	family with sequence similarity 162, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-19904887-3	chr3	19904796	19904996	+	740.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10025.0	NR_027985	70808.0	Mm.427103	NR_027985	ENSMUSG00000048106	4632415L05Rik	AI662792	RRS1 ribosome biogenesis regulator homolog pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-16992511-2	chr12	16992407	16992607	+	792.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172574, intron 5 of 6)	intron (NM_172574, intron 5 of 6)	7611.0	NM_172574	217430.0	Mm.379451	NM_172574	ENSMUSG00000045679	Pqlc3	C78076|E030024M05Rik	PQ loop repeat containing	protein-coding	0.955067851952255	1.37546417419946	1.56081437474333	0.806406685187459	1.10408708580828	1.51995091818253	1.02306136363988	1.51954109678407	0.390946226856091	0.765574325223818	0.998431161219273
Merged-chr8-120615542-2	chr8	120615442	120615642	+	642.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001308449, intron 2 of 3)	intron (NM_001308449, intron 2 of 3)	18840.0	NM_197988	68918.0	Mm.473736	NM_197988	ENSMUSG00000043687	1190005I06Rik	-	RIKEN cDNA 1190005I06 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-108341175-4	chr9	108341048	108341248	+	934.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001329528)	TTS (NM_001329528)	2068.0	NM_001329527	14775.0	Mm.1090	NM_008160	ENSMUSG00000063856	Gpx1	AI195024|AL033363|CGPx|GPx-1|GSHPx-1|Gpx	glutathione peroxidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46742066-2	chr8	46741966	46742166	+	908.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_152560, intron 1 of 7)	intron (NR_152560, intron 1 of 7)	2321.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-93288235-2	chr16	93288135	93288335	+	615.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	64954.0	NR_040486	69857.0	Mm.81192	NR_040486	ENSMUSG00000100277	1810053B23Rik	1810008L18Rik|1810056K14Rik	RIKEN cDNA 1810053B23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127612218-2	chr10	127612118	127612318	+	935.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 2 of 88)	intron (NM_008512, intron 2 of 88)	8930.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139220769-2	chr5	139220669	139220869	+	607.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359496, intron 2 of 20)	intron (NM_001359496, intron 2 of 20)	5611.0	NM_001256118	77053.0	Mm.210845	NM_024451	ENSMUSG00000036817	Sun1	4632417G13Rik|5730434D03Rik|Unc84a|mKIAA0810	Sad1 and UNC84 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-28012417-4	chr3	28012333	28012533	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008875, intron 1 of 25)	intron (NM_008875, intron 1 of 25)	28262.0	NM_008875	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-165641603-4	chr1	165641511	165641711	+	990.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7070.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-79531012-2	chr14	79530912	79531112	+	637.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286411, intron 1 of 8)	intron (NM_001286411, intron 1 of 8)	15338.0	NM_001286411	13709.0	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-154881746-2	chr3	154881627	154881827	+	820.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177066, intron 17 of 24)	ORR1D2|LTR|ERVL-MaLR	170594.0	NM_175176	209601.0	Mm.331454	NM_175176	ENSMUSG00000078161	Erich3	1700013E18Rik|4922501L14Rik|5031409G23Rik|AI596448|Gm133	glutamate rich 3	protein-coding	2.31565878126026	3.41719885374516	3.05343187025434	2.45212108103781	2.10715093592513	2.06255526454726	1.2750566639636	1.23795411525238	-2.5470119955693	0.00646308290679546	0.080551317918004
Merged-chr4-6344568-3	chr4	6344462	6344662	+	566.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger9a|DNA|TcMar-Tigger	-21118.0	NM_016807	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	-2.18138529563533	-2.15523716995652	-2.1631445789866	-2.16963996020037	-2.05513010215571	-2.15352360143315	-2.16135451490766	-2.16847729006863	0.759018020146679	0.829933115115583	1
Merged-chr2-180727781-2	chr2	180727681	180727881	+	932.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_183161, intron 1 of 12)	intron (NM_183161, intron 1 of 12)	2442.0	NM_183161	228993.0	Mm.87189	NM_183161	ENSMUSG00000023393	Slc17a9	1700019H03Rik|BC019537|Vnut	solute carrier family 17, member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-10380286-2	chr17	10380186	10380386	+	577.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55684.0	NR_045461	76634.0	Mm.491052	NR_045461	ENSMUSG00000099384	1700110C19Rik	-	RIKEN cDNA 1700110C19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-72847883-3	chr12	72847808	72848008	+	777.866638	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	69857.0	NM_029444	75801.0	Mm.242892	NM_029444	ENSMUSG00000021098	4930447C04Rik	4921504I02Rik|A930035O15Rik|Six6OS|Six6as|Six6os1	RIKEN cDNA 4930447C04 gene	protein-coding	0.44529194538936	0.1849240719163	0.178029363897318	0.921247895487325	0.320049625207582	0.186473828478662	0.17955284880639	0.930113272948562	-0.136806576455422	0.944623825378788	1
Merged-chr17-12036341-3	chr17	12036241	12036441	+	703.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016694, intron 10 of 11)	intron (NM_016694, intron 10 of 11)	-82943.0	NM_026644	68262.0	Mm.258300	NM_026644	ENSMUSG00000023827	Agpat4	1500003P24Rik	1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)	protein-coding	0.862821929736026	1.25759092758875	0.591067617556804	0.58338109404907	1.09681440592392	1.38374429586417	0.593256071573322	1.05136374040472	0.978493902407504	0.535310972824287	0.95286627222167
Merged-chr11-97469068-3	chr11	97468941	97469141	+	755.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021493, intron 11 of 18)	intron (NM_021493, intron 11 of 18)	18881.0	NM_021493	58996.0	Mm.394118	NM_021493	ENSMUSG00000049807	Arhgap23	A330041B18Rik	Rho GTPase activating protein 23	protein-coding	1.39997734121209	1.54922917710199	2.01590918774339	1.74021134510393	1.66610360707724	1.12671262977271	2.21800130320252	1.74912842852579	0.179962938558586	0.869640374259319	0.998431161219273
Merged-chr7-27401957-1	chr7	27401857	27402057	+	701.0	f1_balb.idr	intron (NM_032610, intron 17 of 35)	B1F|SINE|Alu	-5404.0	NM_001199236	80297.0	Mm.459123	NM_032610	ENSMUSG00000011751	Sptbn4	1700022P15Rik|5830426A08Rik|ROSA62|SpbIV|Spnb4|dyn|lnd|nmf261|nmf379|qv	spectrin beta, non-erythrocytic 4	protein-coding	0.475369598340582	0.511729836483832	0.500042366435762	0.998147983193196	0.939825892052214	0.51433650074097	1.663290888796	1.2414286734644	2.55847516287884	0.133437356090791	0.570963408836415
Merged-chr17-30025568-2	chr17	30025468	30025668	+	861.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_151443, intron 1 of 4)	intron (NR_151443, intron 1 of 4)	20529.0	NM_001356265	21769.0	Mm.220972	NM_148926	ENSMUSG00000044477	Zfand3	AW539211|TEG-27|Tex27	zinc finger, AN1-type domain 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-82568125-2	chr11	82568025	82568225	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65228.0	NR_033582	791422.0	Mm.341562	NR_033582	ENSMUSG00000069796	Gm11426	-	predicted gene 11426	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83560605-4	chr11	83560500	83560700	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	18036.0	NM_011338	20308.0	Mm.416125	NM_011338	ENSMUSG00000019122	Ccl9	CCF18|MRP-2|Scya10|Scya9	chemokine (C-C motif) ligand 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-108913038-4	chr12	108912942	108913142	+	966.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177602, intron 2 of 6)	intron (NM_177602, intron 2 of 6)	18770.0	NM_177602	212198.0	Mm.342082	NM_177602	ENSMUSG00000040877	Wdr25	B930090D16Rik	WD repeat domain 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-165133505-2	chr1	165133405	165133605	+	744.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27268.0	NM_032005	83993.0	Mm.190649	NM_032005	ENSMUSG00000026572	Tbx19	AU019250|D1Ertd754e|Tpit	T-box 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-122920197-4	chr7	122920095	122920295	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50264.0	NR_045614	73951.0	Mm.389936	NR_045614		4930413G21Rik	-	RIKEN cDNA 4930413G21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4723009-4	chr16	4722907	4723107	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER20B|LTR|ERVK	-3354.0	NM_001136066	15369.0	Mm.272866	NM_010443	ENSMUSG00000004070	Hmox2	HO-2|HO2	heme oxygenase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153086054-1	chr2	153085954	153086154	+	637.5	f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	20099.0	NM_145536	228788.0	Mm.299979	NM_145536	ENSMUSG00000027474	Ccm2l	-	cerebral cavernous malformation 2-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-54074892-11	chr10	54074786	54074986	+	965.339417	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008548, exon 2 of 13)	exon (NM_008548, exon 2 of 13)	910.0	NM_008548	17155.0	Mm.117294	NM_008548	ENSMUSG00000003746	Man1a	Man1a1|PCR1	mannosidase 1, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-103488451-3	chr15	103488337	103488537	+	610.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153505, intron 26 of 30)	intron (NM_153505, intron 26 of 30)	-14597.0	NM_008800	18574.0	Mm.390792	NM_008800	ENSMUSG00000022489	Pde1b	Pde1b1	phosphodiesterase 1B, Ca2+-calmodulin dependent	protein-coding	2.25831901598657	3.05339414118712	1.63203893432747	1.10006962963455	1.3041901148437	2.85746333580064	2.14492071106434	1.37268780479679	-0.296255662642133	0.78383477521775	0.998431161219273
Merged-chr11-58168439-4	chr11	58168308	58168508	+	989.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172558, exon 1 of 28)	exon (NM_172558, exon 1 of 28)	131.0	NM_172558	216766.0	Mm.275349	NM_172558	ENSMUSG00000037275	Gemin5	AA407055|AA407208|AI451603|BB194447|C330013N08	gem nuclear organelle associated protein 5	protein-coding	1.77693146145859	2.39739416583266	1.20041731311018	0.942318916624979	2.12638050181098	1.45846781848906	0.964536930155538	1.52444480979736	-0.351380440501997	0.777452546892515	0.998431161219273
Merged-chr9-21101095-1	chr9	21100995	21101195	+	590.0	f0_balb.idr	Intergenic	Intergenic	-9087.0	NR_038081	100568458.0	Mm.196137	NR_038081		Gm38431	Raver1-fdx1l	predicted gene, 38431	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-66041338-4	chr18	66041232	66041432	+	836.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38697.0	NM_001172062	70361.0	Mm.290857	NM_027400	ENSMUSG00000041891	Lman1	2610020P13Rik|AI326273|AU043785|C730041J05|ERGIC53|F5F8D|MCFD1|MR60|P58|gp58	lectin, mannose-binding, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71136813-4	chr17	71136717	71136917	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-46715.0	NM_001357791	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-54608929-2	chr9	54608829	54609029	+	627.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_053178, intron 13 of 13)	intron (NM_053178, intron 13 of 13)	22418.0	NM_029573	67834.0	Mm.279195	NM_029573	ENSMUSG00000032279	Idh3a	1110003P10Rik|1500012E04Rik|AA407078|AI316514	isocitrate dehydrogenase 3 (NAD+) alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69629009-4	chr11	69628893	69629093	+	933.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3978.0	NM_011814	23879.0	Mm.41930	NM_011814	ENSMUSG00000018765	Fxr2	Fxr2h	fragile X mental retardation, autosomal homolog 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107584400-2	chr9	107584354	107584554	+	740.75	f1_balb.idr|f1_c57bl6.idr	TTS (NM_019750)	TTS (NM_019750)	3158.0	NM_178020	109685.0	Mm.447916	NM_178020	ENSMUSG00000036091	Hyal3	Hyl3	hyaluronoglucosaminidase 3	protein-coding	0.769444221768605	0.56235345655339	0.0585218043712971	0.0539987401921363	0.535708509016	0.0656938345149528	0.0598137108547533	0.0547893550614867	-1.4255857680678	0.518964819788821	1
Merged-chr15-75841285-2	chr15	75841185	75841385	+	923.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_172121, intron 1 of 11)	intron (NM_172121, intron 1 of 11)	623.0	NM_172121	223642.0	Mm.209800	NM_172121	ENSMUSG00000075600	Zc3h3	BC049953|Kiaa0150|Smicl|Zc3hdc3	zinc finger CCCH type containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-109881863-2	chr7	109881763	109881963	+	672.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4|SINE|ID	-16184.0	NM_020052	56788.0	Mm.40447	NM_020052	ENSMUSG00000007279	Scube2	4932442O19Rik|Cegf1|Cegp1	signal peptide, CUB domain, EGF-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31207372-2	chr14	31207272	31207472	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022656)	promoter-TSS (NM_022656)	-546.0	NM_001347583	64652.0	Mm.298728	NM_022656	ENSMUSG00000021910	Nisch	1200007D05Rik|3202002H23Rik|AW494485|I-1|edsn	nischarin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118672347-2	chr9	118672257	118672457	+	733.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 10 of 27)	intron (NM_133721, intron 10 of 27)	-39335.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	1.00926752076937	0.328126816102618	0.319473935121987	1.18539171794534	1.02298104224768	0.330065694550835	0.321389768495555	0.313918710176337	-1.18119151224507	0.549837507269025	1
Merged-chr3-95673376-4	chr3	95673280	95673480	+	848.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14537.0	NM_144899	229595.0	Mm.490574	NM_144899	ENSMUSG00000015850	Adamtsl4	ADAMTSL-4|Tsrc1	ADAMTS-like 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-49894937-3	chr14	49894841	49895041	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_146494, exon 2 of 2)	exon (NM_146494, exon 2 of 2)	7000.0	NM_146494	258487.0	Mm.270514	NM_146494	ENSMUSG00000048933	Olfr722	MOR241-3	olfactory receptor 722	protein-coding	2.29975385752298	2.62355240121073	2.91719242480136	2.95184997830259	0.943093023958725	1.06457723470848	1.02756637085927	0.994184930566262	-6.00188203190848	2.24942927097479e-06	0.00012851739234836
Merged-chr4-35225999-7	chr4	35225894	35226094	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081343)	promoter-TSS (NM_001081343)	-114.0	NM_001081343	73205.0	Mm.331544	NM_001081343	ENSMUSG00000028300	3110043O21Rik	AI840585|C9orf72	RIKEN cDNA 3110043O21 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-147542460-4	chr5	147542366	147542566	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028291, intron 16 of 18)	intron (NM_028291, intron 16 of 18)	112310.0	NM_028291	72587.0	Mm.320469	NM_028291	ENSMUSG00000029647	Pan3	2700050F09Rik|A430027N15Rik|AU014670	PAN3 poly(A) specific ribonuclease subunit	protein-coding	6.13794888277047	5.83559444123656	6.20901070032938	6.14075924257795	5.71146416095813	6.39507731608089	5.9038643775756	6.46833876002709	0.0654164393257773	0.787891190895301	0.998431161219273
Merged-chr15-72837127-4	chr15	72837038	72837238	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164641, intron 17 of 17)	intron (NM_001164641, intron 17 of 17)	-26814.0	NR_002864	353342.0	Mm.440245	NR_002864	ENSMUSG00000106847	Peg13	-	paternally expressed 13	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-42150097-4	chr13	42150010	42150210	+	947.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007772, intron 3 of 8)	intron (NM_007772, intron 3 of 8)	98089.0	NM_007772	110521.0	Mm.4808	NM_007772	ENSMUSG00000021366	Hivep1	Cryabp1	human immunodeficiency virus type I enhancer binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-60277682-4	chr10	60277570	60277770	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146120)	promoter-TSS (NM_001146120)	42.0	NM_001146121	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-32321313-4	chr17	32321214	32321414	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_131218)	promoter-TSS (NR_131218)	-76.0	NR_131218	56399.0	Mm.328945	NM_019774	ENSMUSG00000024045	Akap8	1200016A02Rik|AA673585|AKAP-8|AKAP95|AU015639	A kinase (PRKA) anchor protein 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167335921-3	chr2	167335823	167336023	+	819.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019835, intron 1 of 8)	intron (NM_019835, intron 1 of 8)	13255.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117794293-2	chr11	117794193	117794393	+	660.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3367.0	NM_029964	77727.0	Mm.159981	NM_029964	ENSMUSG00000025573	6030468B19Rik	Il-40	RIKEN cDNA 6030468B19 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-66143854-2	chr5	66143760	66143960	+	732.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001127382, intron 2 of 7)	intron (NM_001127382, intron 2 of 7)	7118.0	NM_001291226	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-76631287-4	chr11	76631203	76631403	+	974.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	-41167.0	NM_177182	320522.0	Mm.131585	NM_177182	ENSMUSG00000044243	Bhlha9	A830053O21Rik|Fingerin	basic helix-loop-helix family, member a9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-93576382-2	chr1	93576282	93576482	+	746.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_145519, exon 10 of 27)	exon (NM_145519, exon 10 of 27)	59345.0	NM_021537	59041.0	Mm.28761	NM_021537	ENSMUSG00000026277	Stk25	1500019J11Rik|AU018434|C86992|Ste20-like|Ysk1	serine/threonine kinase 25 (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-75547367-4	chr9	75547271	75547471	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357828, intron 1 of 10)	intron (NM_001357828, intron 1 of 10)	12286.0	NM_016963	50875.0	Mm.38445	NM_016963	ENSMUSG00000058587	Tmod3	U-Tmod|UTMOD	tropomodulin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-132312888-4	chr1	132312797	132312997	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3228.0	NM_001195025	74137.0	Mm.100666	NM_028778	ENSMUSG00000009772	Nuak2	1200013B22Rik|Omphk2|Snark|mKIAA0537	NUAK family, SNF1-like kinase, 2	protein-coding	4.89716833499467	5.45134436808169	5.67885203951953	5.02992342820066	4.93369823538154	5.48565332894329	5.71508734599592	5.05303070722283	0.0381169448825273	0.904917118630393	0.998431161219273
Merged-chr17-8905653-4	chr17	8905585	8905785	+	889.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347321, intron 2 of 21)	intron (NM_001347321, intron 2 of 21)	55700.0	NM_001347321	23984.0	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-49055568-4	chr9	49055477	49055677	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_012039)	promoter-TSS (NM_012039)	-4.0	NM_012039	26951.0	Mm.24791	NM_012039	ENSMUSG00000032264	Zw10	6330566F14Rik|MmZw10	zw10 kinetochore protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-13562838-3	chr12	13562744	13562944	+	866.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027706, intron 50 of 51)	intron (NM_027706, intron 50 of 51)	64802.0	NR_136761	102639399.0	Mm.122052	NR_136761	ENSMUSG00000113666	Gm35725	-	predicted gene, 35725	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118661596-1	chr9	118661496	118661696	+	988.0	f1_balb.idr	intron (NM_133721, intron 7 of 27)	intron (NM_133721, intron 7 of 27)	-50096.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	2.96330244320854	1.92020793788917	1.19476100676362	2.07987599134934	1.85843801657138	2.09886009872966	1.20208091110751	2.73575273063856	-0.25732510434972	0.810301704130549	0.998431161219273
Merged-chr19-43885269-4	chr19	43885178	43885378	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028029, intron 4 of 15)	intron (NM_028029, intron 4 of 15)	-5510.0	NM_001306088	71972.0	Mm.159024	NM_028029	ENSMUSG00000025195	Dnmbp	2410003L07Rik|2410003M15Rik|TUBA	dynamin binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-40343284-3	chr9	40343197	40343397	+	815.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_040728)	TTS (NR_040728)	2948.0	NM_001357623	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-75978203-4	chr2	75978105	75978305	+	986.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081228)	promoter-TSS (NM_001081228)	-26.0	NM_001081228	620631.0	Mm.389286	NM_001081228	ENSMUSG00000075272	Ttc30a2	-	tetratricopeptide repeat domain 30A2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-193153031-2	chr1	193152931	193153131	+	750.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016851)	promoter-TSS (NM_016851)	-81.0	NM_016851	54139.0	Mm.273695	NM_016851	ENSMUSG00000026638	Irf6	AI876454|E230028I05Rik|mirf6	interferon regulatory factor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114671948-2	chr11	114671848	114672048	+	760.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001048058, intron 3 of 3)	intron (NM_001048058, intron 3 of 3)	3167.0	NM_001048058	67671.0	Mm.238817	NM_023372	ENSMUSG00000057322	Rpl38	0610025G13Rik|Rbt|Ts|Tss	ribosomal protein L38	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-102401111-4	chr2	102401019	102401219	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020267)	promoter-TSS (NM_020267)	-219.0	NM_020267	80985.0	Mm.315002	NM_020267	ENSMUSG00000027189	Trim44	Dipb|Mc7	tripartite motif-containing 44	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95143789-1	chr3	95143689	95143889	+	741.0	f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-1429.0	NM_027206	69769.0	Mm.34368	NM_027206	ENSMUSG00000013707	Tnfaip8l2	1810019A08Rik|AW610835|TIPE2	tumor necrosis factor, alpha-induced protein 8-like 2	protein-coding	1.65246294312155	1.05484811641494	1.93613782138062	2.55514366995024	0.979797430451225	1.06040617203087	2.07066294406884	2.19611572252327	-0.551740962248326	0.656833752391628	0.988505467120973
Merged-chr13-37332854-4	chr13	37332764	37332964	+	942.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12481.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-64023892-4	chr15	64023795	64023995	+	994.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360037, intron 1 of 11)	intron (NM_001360037, intron 1 of 11)	-25829.0	NM_001360035	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-130899541-4	chr4	130899449	130899649	+	971.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13785.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21509165-2	chr9	21509065	21509265	+	878.833374	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_136912, exon 2 of 3)	non-coding (NR_136912, exon 2 of 3)	729.0	NM_001324510	17083.0	Mm.196618	NM_010744	ENSMUSG00000032180	Tmed1	Il1rl1l|Ly84l|St2l	transmembrane p24 trafficking protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-63332820-2	chr13	63332720	63332920	+	833.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_007985, intron 8 of 14)	intron (NM_007985, intron 8 of 14)	-31537.0	NR_037235	100526474.0		NR_037235	ENSMUSG00000092741	Mir3074-1	mmu-mir-3074-1	microRNA 3074-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-128128892-4	chr7	128128760	128128960	+	888.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021334)	promoter-TSS (NM_021334)	-708.0	NM_021334	16411.0	Mm.22378	NM_021334	ENSMUSG00000030789	Itgax	AI449405|Cd11c|Cr4|N418	integrin alpha X	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-155710855-3	chr4	155710760	155710960	+	762.805542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026899, intron 1 of 4)	intron (NM_026899, intron 1 of 4)	6045.0	NM_026899	68991.0	Mm.294770	NM_026899	ENSMUSG00000029038	Ssu72	1190002E22Rik|1500011L16Rik|2610101M12Rik	Ssu72 RNA polymerase II CTD phosphatase homolog (yeast)	protein-coding	-1.84362945061595	-1.81329140012928	-1.67810947190254	-1.83000206547234	-1.84149977556685	-1.81130325271815	-1.67603257143677	-1.82865309133977	0.037684011990387	0.991491645451152	1
Merged-chr2-23048234-1	chr2	23048134	23048334	+	641.0	f0_balb.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-7993.0	NM_145994	11308.0	Mm.205647	NM_007380	ENSMUSG00000058835	Abi1	E3B1|NAP1|Ssh3bp1|abi-1	abl-interactor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5839654-5	chr19	5839433	5839633	+	800.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_131212, exon 1 of 1)	non-coding (NR_131212, exon 1 of 1)	5945.0	NR_131212	66961.0	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-63812462-4	chr5	63812384	63812584	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029554)	promoter-TSS (NM_029554)	-11.0	NM_029554	76261.0	Mm.38143	NM_029554	ENSMUSG00000060512	0610040J01Rik	AI662686	RIKEN cDNA 0610040J01 gene	protein-coding	2.84621624596341	3.40571684516892	1.77613027635268	2.74090249317398	2.94130376490925	2.58558051044753	2.19635403251354	2.42138786544022	-0.482143673351524	0.538256811930558	0.954124670358987
Merged-chr8-117371933-2	chr8	117371833	117372033	+	822.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028941, intron 1 of 20)	intron (NM_028941, intron 1 of 20)	22763.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32881163-1	chr2	32881063	32881263	+	544.0	f1_c57bl6.idr	intron (NM_146119, intron 1 of 13)	intron (NM_146119, intron 1 of 13)	5029.0	NM_146119	227737.0	Mm.301646	NM_146119	ENSMUSG00000026796	Fam129b	9130404D14Rik	family with sequence similarity 129, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-130174697-2	chr5	130174597	130174797	+	709.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359233, intron 1 of 7)	intron (NM_001359233, intron 1 of 7)	2878.0	NM_001359233	56715.0	Mm.288639	NM_019983	ENSMUSG00000025340	Rabgef1	Rab5ef|Rabex5|Rin2	RAB guanine nucleotide exchange factor (GEF) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-145201898-4	chr5	145201771	145201971	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023322)	promoter-TSS (NM_023322)	11.0	NM_023322	67235.0	Mm.432480	NM_023322	ENSMUSG00000029627	Zkscan14	2310046C23Rik|2810437E14Rik|Zfp99|Znf394	zinc finger with KRAB and SCAN domains 14	protein-coding	2.14124167843657	4.02350531595356	2.70613757503281	2.75849480203602	3.14085848567452	4.36784317658254	2.38630842834594	4.39719660845254	1.06934250779683	0.131065807224468	0.566336454410263
Merged-chr11-31868125-4	chr11	31868022	31868222	+	837.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2818.0	NM_001290676	67579.0	Mm.339792	NM_026252	ENSMUSG00000020300	Cpeb4	Cpe-bp4|Cpeb-4|mCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding	3.32064623609049	4.66253100796847	3.99324394825967	3.10248435669076	3.89651349747248	4.50442049677585	4.14888974178867	3.96701306898811	0.328808918756377	0.515863449261763	0.947402641287243
Merged-chr2-129333617-2	chr2	129333502	129333702	+	576.5	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23630.0	NM_010554	16175.0	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-57566212-2	chr16	57566112	57566312	+	624.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177871, intron 1 of 1)	intron (NM_001177871, intron 1 of 1)	16970.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-102290234-4	chr2	102290121	102290321	+	952.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-103761.0	NM_001290784	241576.0	Mm.489740	NM_178886	ENSMUSG00000048058	Ldlrad3	6430500P08|AI194318|Lrad3	low density lipoprotein receptor class A domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-44384439-2	chr13	44384339	44384539	+	664.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55288.0	NR_045489	69491.0	Mm.392410	NR_045489	ENSMUSG00000098144	1700029N11Rik	-	RIKEN cDNA 1700029N11 gene	ncRNA	-0.780507411323491	-0.770201048850769	-0.0876146456965483	-0.776182298477195	-0.499830447499526	-0.769368699703383	-0.772832506895163	-0.775727174717696	-1.48766019666651	0.617325031110839	1
Merged-chr3-9759291-4	chr3	9759199	9759399	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053182, intron 1 of 7)	intron (NM_053182, intron 1 of 7)	74380.0	NM_053182	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-103778423-4	chr5	103778344	103778544	+	799.229126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080798, intron 1 of 19)	intron (NM_001080798, intron 1 of 19)	23871.0	NM_001080798	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-51589661-2	chr10	51589561	51589761	+	830.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029894, intron 2 of 3)	MTEa|LTR|ERVL-MaLR	799.0	NM_029894	77296.0	Mm.30588	NM_029894	ENSMUSG00000019909	Fam162b	9430073N08Rik	family with sequence similarity 162, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135350622-2	chr4	135350522	135350722	+	753.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016799, intron 1 of 17)	intron (NM_016799, intron 1 of 17)	2592.0	NM_016799	51796.0	Mm.1963	NM_016799	ENSMUSG00000028809	Srrm1	AA407769|POP101|Srm160	serine/arginine repetitive matrix 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-107514380-2	chr1	107514280	107514480	+	809.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_011111, intron 1 of 7)	intron (NM_011111, intron 1 of 7)	2870.0	NM_011111	18788.0	Mm.271870	NM_011111	ENSMUSG00000062345	Serpinb2	PAI-2|Planh2|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-94752760-1	chr11	94752660	94752860	+	707.0	f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	8422.0	NM_001105561	217122.0	Mm.24063	NM_183153		Gm11545	A430060F13Rik|C86086	predicted gene 11545	protein-coding	1.83144152117282	0.580421048555724	1.38607964436778	0.555770468915447	1.44044387022865	0.583486590348332	0.569700666569548	0.770904512671646	-1.18401134479083	0.472515940796089	0.926125823511231
Merged-chr8-68881435-4	chr8	68881307	68881507	+	693.458374	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008509, intron 1 of 9)	CpG	852.0	NM_008509	16956.0	Mm.1514	NM_008509	ENSMUSG00000015568	Lpl	-	lipoprotein lipase	protein-coding	2.4275677927055	3.6995022634654	2.36711586393778	2.95954810039385	2.32873853627476	2.98217658828416	2.0299892259054	2.68966322828409	-0.803018252403393	0.290167586908856	0.795360911821054
Merged-chr6-129616186-6	chr6	129616093	129616293	+	867.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083322, intron 5 of 7)	intron (NM_001083322, intron 5 of 7)	6490.0	NM_033078	27007.0	Mm.8217	NM_033078	ENSMUSG00000030149	Klrk1	D6H12S2489E|NKG2-D|Nkg2d	killer cell lectin-like receptor subfamily K, member 1	protein-coding	-1.1373882097986	-1.25072181621019	-1.10358334894958	-1.26891050250677	-1.01052543487044	-1.24855782160973	-1.25844715736982	-1.26744221463098	-0.0304936902749621	0.992362352355808	1
Merged-chr19-44315270-2	chr19	44315119	44315319	+	1000.0	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	12048.0	NR_039574	100628619.0		NR_039574	ENSMUSG00000093315	Mir5114	mmu-mir-5114|mu-mir-5114	microRNA 5114	ncRNA	4.60117779103853	3.9233770296167	4.15295856941994	5.00829021910577	4.14372192187062	3.95249473172969	4.18437362052998	4.65451438891714	-0.301474915423199	0.478617057220197	0.928092227925527
Merged-chr15-98468607-2	chr15	98468507	98468707	+	665.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx10|LINE|L1	12295.0	NM_146280	258277.0	Mm.222977	NM_146280	ENSMUSG00000032987	Olfr281	MOR160-5	olfactory receptor 281	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141601208-2	chr4	141601103	141601303	+	724.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133754, intron 1 of 8)	intron (NM_133754, intron 1 of 8)	-1279.0	NM_001163256	74202.0	Mm.490327	NM_133754	ENSMUSG00000006219	Fblim1	2410043F08Rik|Cal|Fblp1|Gt10|migfilin|migfilin(s)	filamin binding LIM protein 1	protein-coding	0.669667917225078	0.191379400270404	0.886981053511218	0.178879186466571	0.935848778020101	0.192961519414124	0.185894335621117	0.179834553491044	-0.528605735851505	0.800688245937162	1
Merged-chr8-126581004-4	chr8	126580910	126581110	+	949.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	12426.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	1.03483115810663	2.13987391641021	2.06241052337144	1.63386947630861	1.03968299605202	2.15691725837294	2.07977316071483	1.64234714052685	0.0380165578823259	0.974012090608956	0.998431161219273
Merged-chr10-93423187-2	chr10	93423087	93423287	+	706.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9920.0	NR_106161	102465791.0		NR_106161	ENSMUSG00000098679	Mir7688	Gm27874|mmu-mir-7688	microRNA 7688	ncRNA	1.42898833005999	1.02181742192803	1.79345528976626	1.84054194905627	1.44024736056013	1.02562299453677	1.80843098304588	1.85069634760946	0.0359409715312448	0.97636745477523	0.998431161219273
Merged-chr9-107693911-2	chr9	107693811	107694011	+	812.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011349, intron 2 of 17)	intron (NM_011349, intron 2 of 17)	11680.0	NM_001311151	20350.0	Mm.12903	NM_011349	ENSMUSG00000034684	Sema3f	Sema4|Semak	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F	protein-coding	-2.18361151404719	-2.02201993626881	-2.16403530460334	-2.1710062446989	-2.18164157430194	-2.15370992785044	-2.16211418110791	-2.16975844975469	-0.683654500252594	0.846597994014493	1
Merged-chr16-49962425-3	chr16	49962325	49962525	+	560.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6595.0	NR_153658	100503490.0	Mm.72499	NR_153658		Gm19723	-	predicted gene, 19723	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-59262752-2	chr10	59262652	59262852	+	860.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40830.0	NM_172939	268301.0	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-148060478-3	chr4	148060361	148060561	+	775.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010840)	TTS (NM_010840)	19272.0	NM_001161798	17769.0	Mm.89959	NM_010840	ENSMUSG00000029009	Mthfr	AI323986	methylenetetrahydrofolate reductase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-172195318-3	chr1	172195238	172195438	+	939.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_151641, exon 14 of 14)	non-coding (NR_151641, exon 14 of 14)	11466.0	NM_001329871	18611.0	Mm.544	NM_011063	ENSMUSG00000013698	Pea15a	Mat1|PEA-15|Pea15|Pkcs15	phosphoprotein enriched in astrocytes 15A	protein-coding	2.32385376261884	2.30785385743724	2.74938600758865	0.859334638038409	1.58755607246735	0.918059139375533	0.8892541031159	0.863493293963015	-3.2698930443786	0.0144164854062974	0.141237609067574
Merged-chr12-86818861-2	chr12	86818761	86818961	+	611.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	65953.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-44018319-2	chr4	44018219	44018419	+	687.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080384, intron 2 of 5)	RSINE1|SINE|B4	5669.0	NM_001290470	12757.0	Mm.298875	NM_016760	ENSMUSG00000028478	Clta	AV026556|Lca	clathrin, light polypeptide (Lca)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-88472161-4	chr12	88472041	88472241	+	950.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVB7_1-LTR_MM|LTR|ERVK	-94818.0	NR_045888	71818.0	Mm.490789	NR_045888	ENSMUSG00000113434	3200001D21Rik	-	RIKEN cDNA 3200001D21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-50907146-1	chr9	50907046	50907246	+	685.0	f0_balb.idr	intron (NM_178710, intron 9 of 15)	intron (NM_178710, intron 9 of 15)	50222.0	NM_001286553	73699.0	Mm.7726	NM_028614	ENSMUSG00000032058	Ppp2r1b	2410091N08Rik|AI790395	protein phosphatase 2, regulatory subunit A, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114883027-4	chr11	114882931	114883131	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7010.0	NM_001347654	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	3.69698811019944	3.74834545427009	2.42584332269438	3.21759883194588	3.67465875801613	3.77469615465795	2.44646492886918	3.2342993533348	0.0114854580734463	0.985541753015357	0.998431161219273
Merged-chr8-83773326-3	chr8	83773219	83773419	+	940.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-32008.0	NM_001163031	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	2.65383681265198	3.31325449941849	3.10643017964685	3.91529214834338	2.78314376064647	1.6607208194072	2.65781837984756	3.8878188654581	-0.532841324683173	0.476926495050304	0.927980290875356
Merged-chr14-62001766-4	chr14	62001657	62001857	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	291222.0	NM_173419	239133.0	Mm.127330	NM_173419	ENSMUSG00000048281	Dleu7	BC038059	deleted in lymphocytic leukemia, 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-93095380-4	chr10	93095283	93095483	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13787.0	NM_001347060	380654.0	Mm.34980	NM_001347060	ENSMUSG00000020014	Cfap54	4930485B16Rik|Gm872	cilia and flagella associated protein 54	protein-coding	3.09556215097627	3.96881421302539	3.62666725326904	3.02458648325849	1.62601427646727	1.54777464121337	2.41262141932008	3.04088085832004	-2.05812680820186	0.00715498095600505	0.0860749948296945
Merged-chr5-114859502-2	chr5	114859402	114859602	+	649.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_026263, intron 2 of 11)	intron (NM_026263, intron 2 of 11)	5788.0	NM_026263	67593.0	Mm.251409	NM_026263	ENSMUSG00000029564	4930519G04Rik	1700014B12Rik	RIKEN cDNA 4930519G04 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-36988731-2	chr17	36988631	36988831	+	683.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001115075, exon 3 of 6)	exon (NM_001115075, exon 3 of 6)	773.0	NM_001115075	240095.0	Mm.246609	NM_001115075	ENSMUSG00000024459	H2-M5	CRW2|D130003B22Rik|H-2M5	histocompatibility 2, M region locus 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-51855791-2	chr13	51855691	51855891	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9116.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-75696561-2	chr15	75696461	75696661	+	757.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7727.0	NM_001163465	14787.0	Mm.57052	NM_008164	ENSMUSG00000022580	Rhpn1	BB023497|Grbp|Rhophilin|mKIAA1929	rhophilin, Rho GTPase binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36530045-3	chr18	36529913	36530113	+	843.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001271546, exon 5 of 22)	exon (NM_001271546, exon 5 of 22)	1861.0	NM_001271545	240215.0	Mm.135463	NM_172830	ENSMUSG00000024485	Slc4a9	AE4|D630003B07|D630024F24Rik	solute carrier family 4, sodium bicarbonate cotransporter, member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-28592377-2	chr10	28592277	28592477	+	618.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359356, intron 29 of 30)	B3|SINE|B2	-75983.0	NM_001305663	210757.0	Mm.123021	NM_178666	ENSMUSG00000049109	Themis	E430004N04Rik|Gasp|Spot|Tsepa|thylex	thymocyte selection associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80076314-2	chr10	80076214	80076414	+	926.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359636)	promoter-TSS (NM_001359636)	-875.0	NM_001359636	216161.0	Mm.262102	NM_183426	ENSMUSG00000035673	Sbno2	BC019206|F730040C21|Sno|Stno	strawberry notch 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106317475-3	chr11	106317389	106317589	+	728.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2927.0	NM_001313939	15985.0	Mm.2987	NM_008339	ENSMUSG00000040592	Cd79b	B29|Ig-beta|Igb|Igbeta	CD79B antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-88718473-4	chr11	88718353	88718553	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001201341)	promoter-TSS (NM_001201341)	-186.0	NM_001201341	76626.0	Mm.400451	NM_054043	ENSMUSG00000069769	Msi2	1700105C15Rik|AI451722|AI563628|AW489193|Msi2h	musashi RNA-binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-116123520-2	chr3	116123420	116123620	+	613.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011693, intron 4 of 8)	L1MA7|LINE|L1	6168.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-32570067-2	chr11	32569967	32570167	+	543.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 2 of 18)	intron (NM_009288, intron 2 of 18)	36801.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-106410892-2	chr8	106410792	106410992	+	629.041626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4447.0	NM_011764	22751.0	Mm.295582	NM_011764	ENSMUSG00000031907	Zfp90	6430515L01Rik|KRAB17|NK10|Zfp64|Zfp83|mKIAA1954	zinc finger protein 90	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28419809-3	chr17	28419685	28419885	+	787.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010220, intron 5 of 10)	intron (NM_010220, intron 5 of 10)	-54569.0	NM_021478	22157.0	Mm.42102	NM_021478	ENSMUSG00000037446	Tulp1	Tulp1l	tubby like protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-35287766-4	chr12	35287665	35287865	+	918.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-92868.0	NR_030449	751520.0		NR_030449	ENSMUSG00000076253	Mir680-3	Mirn680-3	microRNA 680-3	ncRNA	2.15932885505179	1.13825842241432	2.35776951396925	1.08734265290889	1.98931456724546	1.14447040194806	2.70032072559369	2.09901463840688	0.67409218703208	0.567749434491726	0.962562732139494
Merged-chr4-53233524-2	chr4	53233424	53233624	+	557.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-12672.0	NR_040665	78180.0	Mm.243847	NR_040665	ENSMUSG00000086947	4930522O17Rik	-	RIKEN cDNA 4930522O17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-113782418-4	chr9	113782282	113782482	+	677.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114347, intron 6 of 39)	Lx9|LINE|L1	-10948.0	NM_001286603	76499.0	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-56690861-1	chr10	56690761	56690961	+	633.5	f0_balb.idr	Intergenic	T-rich|Low_complexity|Low_complexity	258880.0	NR_152768	102640560.0	Mm.417249	NR_152768		Gm36595	-	predicted gene, 36595	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84567200-3	chr8	84567082	84567282	+	960.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252060, intron 20 of 47)	intron (NM_001252060, intron 20 of 47)	95670.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	1.15483661066628	0.45706274498321	0.777687783570663	0.750138102944834	1.01145767171936	0.45877423313697	0.451136687592081	0.754977712973389	-0.643184562351163	0.704350134785704	1
Merged-chr5-36486256-2	chr5	36486156	36486356	+	792.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_025725, exon 1 of 1)	exon (NM_025725, exon 1 of 1)	1668.0	NM_025725	66717.0	Mm.42368	NM_025725	ENSMUSG00000050677	Ccdc96	4921513E08Rik	coiled-coil domain containing 96	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-105226449-4	chr4	105226347	105226547	+	865.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080555, intron 5 of 5)	intron (NM_080555, intron 5 of 5)	69100.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120373017-2	chr11	120372917	120373117	+	574.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027980, intron 6 of 9)	intron (NM_027980, intron 6 of 9)	5729.0	NM_027980	71885.0	Mm.274890	NM_027980	ENSMUSG00000025384	Faap100	2310003H01Rik	Fanconi anemia core complex associated protein 100	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-94388890-3	chr11	94388775	94388975	+	704.027771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029600, intron 1 of 30)	intron (NM_029600, intron 1 of 30)	4101.0	NM_029600	76408.0	Mm.23942	NM_029600	ENSMUSG00000020865	Abcc3	1700019L09Rik|ABC31|MLP2|MOAT-D|MRP3	ATP-binding cassette, sub-family C (CFTR/MRP), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-30232521-4	chr5	30232420	30232620	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_137634)	promoter-TSS (NR_137634)	-61.0	NM_027652	28042.0	Mm.168854	NM_027652	ENSMUSG00000075703	Selenoi	4933402G07Rik|AI448296|AI452230|C79563|D5Wsu178e|Ept1|SELI|mKIAA1724	selenoprotein I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-94584592-4	chr8	94584468	94584668	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028221, intron 5 of 7)	intron (NM_028221, intron 5 of 7)	17158.0	NM_028221	102122.0	Mm.250425	NM_028221	ENSMUSG00000031774	Fam192a	1700001O11Rik|2310065K24Rik|AI596259|Nip30	family with sequence similarity 192, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-30564634-4	chr14	30564562	30564762	+	854.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009388, intron 4 of 13)	intron (NM_009388, intron 4 of 13)	-7487.0	NR_037237	100526475.0		NR_037237	ENSMUSG00000093156	Mir3076	mir-3076|mmu-mir-3076	microRNA 3076	ncRNA	-0.98962640304849	-0.772452179300325	-0.983110081876958	-0.98555633682175	-0.989020247428417	-0.318321892641528	-0.980544777226738	-0.98512868206095	2.01255622030887	0.510934153781075	1
Merged-chr1-59583517-1	chr1	59583417	59583617	+	555.0	f0_balb.idr	intron (NM_001013771, intron 12 of 19)	intron (NM_001013771, intron 12 of 19)	59223.0	NM_001357842	381260.0	Mm.486706	NM_001013771	ENSMUSG00000047361	Gm973	AW554518	predicted gene 973	protein-coding	0.0781139353570428	0.0991511315598484	0.988549290298448	0.657058163632241	0.491907411518806	0.100688666969943	0.0938183105898012	0.0879225524308213	-2.10542329247485	0.329103175441695	1
Merged-chr11-72221440-4	chr11	72221295	72221495	+	888.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5803.0	NM_026068	67279.0	Mm.159496	NM_026068	ENSMUSG00000020801	Med31	3110004H13Rik|CGI-125|l11Jus15	mediator complex subunit 31	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-65240089-2	chr13	65239989	65240189	+	711.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus4|LINE|L1	-34373.0	NM_175290	97895.0	Mm.315815	NM_175290	ENSMUSG00000032999	Nlrp4f	C330026N02Rik|C86045|Nalp-kappa|Nalp4f	NLR family, pyrin domain containing 4F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-42896766-2	chr12	42896666	42896866	+	642.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	137451.0	NR_148724	102636207.0		NR_148724		Gm33340	Gm40882	predicted gene, 33340	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117360117-2	chr11	117360017	117360217	+	860.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_017380, intron 9 of 9)	intron (NM_017380, intron 9 of 9)	27804.0	NM_001113488	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-73964352-4	chr16	73964228	73964428	+	752.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358493, intron 14 of 28)	intron (NM_001358493, intron 14 of 28)	377739.0	NR_030464	751561.0		NR_030464	ENSMUSG00000104758	Mir691	Mirn691|mir-691|mmu-mir-691	microRNA 691	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131277016-4	chr1	131276922	131277122	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019777, intron 2 of 21)	intron (NM_019777, intron 2 of 21)	2541.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-44540596-3	chr13	44540485	44540685	+	681.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	100858.0	NR_045489	69491.0	Mm.392410	NR_045489	ENSMUSG00000098144	1700029N11Rik	-	RIKEN cDNA 1700029N11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120358504-2	chr11	120358404	120358604	+	572.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3030.0	NM_172802	238021.0	Mm.481403	NM_172802	ENSMUSG00000025380	Fscn2	A930022G03|Ahl8|C630046B20Rik	fascin actin-bundling protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-65201480-4	chr16	65201374	65201574	+	992.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-95690.0	NM_008310	15557.0	Mm.5040	NM_008310	ENSMUSG00000050783	Htr1f	Htr1eb	5-hydroxytryptamine (serotonin) receptor 1F	protein-coding	0.0654243124330486	-0.0593185059900268	-0.0642739160539909	0.229329241851538	-0.0734821484613991	0.552485749480627	0.390429094852922	-0.0674256917723314	1.54174574007826	0.478626809792323	1
Merged-chr16-91461400-4	chr16	91461318	91461518	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Charlie7|DNA|hAT-Charlie	-3686.0	NR_077219	100503120.0	Mm.387130	NR_077219	ENSMUSG00000084866	A930006K02Rik	-	RIKEN cDNA A930006K02 gene	ncRNA	3.84682966322525	4.0371029175878	4.45490952257423	2.8276118619929	3.70061983411361	4.48012148564913	3.93546965001024	3.74756092868903	0.121273258659484	0.813489597604834	0.998431161219273
Merged-chr16-44876876-2	chr16	44876776	44876976	+	569.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_206535, intron 1 of 5)	MER74C|LTR|ERVL	9779.0	NM_206535	271375.0	Mm.441535	NM_206535	ENSMUSG00000090176	Cd200r2	AY230198|Cd200r1l	Cd200 receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10949785-4	chr19	10949675	10949875	+	952.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023731)	promoter-TSS (NM_023731)	-509.0	NM_023731	108673.0	Mm.294908	NM_023731	ENSMUSG00000024732	Ccdc86	4933411H20Rik|6720480F16Rik|D19Ertd678e	coiled-coil domain containing 86	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21320694-4	chr9	21320598	21320798	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199186)	promoter-TSS (NM_001199186)	-21.0	NM_001359227	68682.0	Mm.148425	NM_152808	ENSMUSG00000057193	Slc44a2	1110028E10Rik|CTL2	solute carrier family 44, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-103377956-1	chr5	103377856	103378056	+	541.0	f0_balb.idr	Intergenic	Intergenic	31358.0	NR_152117	75519.0	Mm.416851	NR_152117	ENSMUSG00000105426	1700021F02Rik	Gm42618	RIKEN cDNA 1700021F02 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133195503-1	chr4	133195403	133195603	+	872.0	f1_c57bl6.idr	promoter-TSS (NR_105984)	promoter-TSS (NR_105984)	-152.0	NR_105984	102466215.0		NR_105984	ENSMUSG00000099202	Mir7017	Gm27945|mmu-mir-7017	microRNA 7017	ncRNA	1.5367504233938	0.924953209880158	0.901052578761608	1.87436202059138	0.853762242577227	2.50349382100344	2.16043676296881	1.32920298068954	1.39005944789605	0.283535040374156	0.786737607402665
Merged-chr16-14112959-4	chr16	14112861	14113061	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081154, intron 26 of 26)	intron (NM_001081154, intron 26 of 26)	46313.0	NM_001081154	223989.0	Mm.85442	NM_001081154	ENSMUSG00000060657	Marf1	4921513D23Rik|BC031575|C87306|E030019O05|Lkap|mKIAA0430	meiosis regulator and mRNA stability 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-44843897-2	chr18	44843797	44843997	+	738.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163013, intron 7 of 29)	intron (NM_001163013, intron 7 of 29)	15232.0	NM_001163013	240255.0	Mm.244482	NM_001163013	ENSMUSG00000034653	Ythdc2	3010002F02Rik|BC037178	YTH domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-67174727-4	chr15	67174650	67174850	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009177, intron 1 of 8)	intron (NM_009177, intron 1 of 8)	2132.0	NM_009177	20442.0	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-148898588-2	chr4	148898488	148898688	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027195, intron 3 of 15)	intron (NM_027195, intron 3 of 15)	53734.0	NR_154553	108168987.0	Mm.393596	NR_154553		Gm13205	AA408865	predicted gene 13205	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-101655496-1	chr4	101655396	101655596	+	1000.0	f1_balb.idr	intron (NM_175036, intron 2 of 3)	intron (NM_175036, intron 2 of 3)	7713.0	NM_175036	230514.0	Mm.4756	NM_175036	ENSMUSG00000035212	Leprot	LEPR|OB-RGRP|Obrgrp|VPS55	leptin receptor overlapping transcript	protein-coding	-0.959039126124413	-0.944122562589791	-0.782973979702775	-0.955776388206635	-0.69741347430694	-0.601273044152593	-0.953080255754944	-0.955431870193704	1.76455544978818	0.544937976129427	1
Merged-chr2-152738835-3	chr2	152738734	152738934	+	925.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	2583.0	NM_001355113	15901.0	Mm.444	NM_010495	ENSMUSG00000042745	Id1	AI323524|D2Wsu140e|Idb1|bHLHb24	inhibitor of DNA binding 1	protein-coding	-0.138530384946678	-0.121439335265715	0.572083992299075	-0.131334641751421	0.0175029689719979	-0.120184750859446	0.5848984598151	-0.130579485230939	0.250035067944651	0.913806262950358	1
Merged-chr5-103644363-3	chr5	103644256	103644456	+	820.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	11368.0	NM_028824	74218.0	Mm.159141	NM_028824	ENSMUSG00000029320	1700016H13Rik	-	RIKEN cDNA 1700016H13 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-72469442-2	chr11	72469319	72469519	+	626.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_153060, intron 2 of 12)	intron (NM_153060, intron 2 of 12)	5608.0	NM_001276383	216892.0	Mm.212812	NM_153060	ENSMUSG00000040447	Spns2	-	spinster homolog 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-54052625-4	chr10	54052549	54052749	+	955.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008548, intron 2 of 12)	MTD|LTR|ERVL-MaLR	23147.0	NM_008548	17155.0	Mm.117294	NM_008548	ENSMUSG00000003746	Man1a	Man1a1|PCR1	mannosidase 1, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-128787560-4	chr4	128787455	128787655	+	888.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081098, intron 4 of 8)	L1ME4c|LINE|L1	18557.0	NM_001081098	230761.0	Mm.22616	NM_001081098	ENSMUSG00000028799	Zfp362	-	zinc finger protein 362	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-35740306-1	chr7	35740206	35740406	+	913.0	f1_balb.idr	intron (NM_178704, intron 3 of 18)	RMER12C|LTR|ERVK	14148.0	NM_178704	233115.0	Mm.257808	NM_178704	ENSMUSG00000043671	Dpy19l3	6030410G08|9330164H19Rik	dpy-19-like 3 (C. elegans)	protein-coding	-0.728332140443048	-0.967974407511711	-0.978754504312907	-0.980695997869197	-0.98342737970483	-0.626243422320278	-0.976817978130297	-0.819928975623552	0.886315247734633	0.765895667589267	1
Merged-chr7-24950473-4	chr7	24950387	24950587	+	887.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19588.0	NR_106013	102465633.0		NR_106013	ENSMUSG00000098802	Mir7046	Gm27469|mmu-mir-7046	microRNA 7046	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126823020-2	chr7	126822920	126823120	+	675.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029978)	promoter-TSS (NM_029978)	-283.0	NM_029978	68952.0	Mm.440393	NM_026884	ENSMUSG00000058966	Fam57b	1500016O10Rik|A330104J06Rik|AI413816|AW060769	family with sequence similarity 57, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-96015943-4	chr10	96015829	96016029	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001932, intron 13 of 28)	intron (NM_001001932, intron 13 of 28)	75266.0	NM_001001932	216238.0	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-40821266-2	chr4	40821166	40821366	+	735.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_022305, intron 2 of 5)	intron (NM_022305, intron 2 of 5)	28872.0	NR_039584	100628614.0		NR_039584	ENSMUSG00000096377	Mir5123	mmu-mir-5123|mu-mir-5123	microRNA 5123	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140622368-2	chr5	140622268	140622468	+	687.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_175274, exon 14 of 14)	3' UTR (NM_175274, exon 14 of 14)	15027.0	NM_008494	16848.0	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-115374813-1	chr6	115374713	115374913	+	543.0	f1_balb.idr	intron (NM_001308354, intron 1 of 7)	intron (NM_001308354, intron 1 of 7)	12464.0	NM_001308354	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-29040500-2	chr7	29040378	29040578	+	713.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_009109, exon 87 of 106)	exon (NM_009109, exon 87 of 106)	43216.0	NR_035489	100316710.0		NR_035489	ENSMUSG00000089219	Mir1963	mir-1963|mmu-mir-1963	microRNA 1963	ncRNA	-0.705102255032725	-0.952111685752871	-0.962615221777784	-0.437351596801677	-0.967644059894427	-0.94954428968602	-0.961277147858996	-0.964338302966076	-2.86336605559115	0.354266356515036	1
Merged-chr1-75521872-4	chr1	75521783	75521983	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027886, intron 2 of 24)	CpG-327	354.0	NM_027886	71728.0	Mm.312650	NM_027886	ENSMUSG00000026213	Stk11ip	1200014D22Rik|BB131189|LIP1|LKB1IP	serine/threonine kinase 11 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-172566451-3	chr1	172566346	172566546	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	6540.0	NR_027644	240916.0	Mm.71940	NM_177723	ENSMUSG00000049598	Vsig8	A030011M19|EG240916	V-set and immunoglobulin domain containing 8	protein-coding	4.98091608326413	4.97171877945375	5.20143941632901	5.20647922857893	3.09342865309673	2.62470779960627	3.15873153506617	1.66093485744732	-3.20672226270795	1.07233367995466e-10	2.29747490930286e-08
Merged-chr10-122745872-4	chr10	122745741	122745941	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110218, intron 1 of 9)	ORR1F|LTR|ERVL-MaLR	66526.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-110476754-5	chr9	110476670	110476870	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010628)	promoter-TSS (NM_010628)	-76.0	NM_177771	270201.0	Mm.41744	NM_177771	ENSMUSG00000054792	Klhl18	A930041K15|AW545966	kelch-like 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-57448505-2	chr10	57448405	57448605	+	557.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37848.0	NR_045353	74928.0	Mm.416643	NR_045353	ENSMUSG00000097370	4930467K11Rik	-	RIKEN cDNA 4930467K11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-113187895-2	chr12	113187815	113188015	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153776, intron 1 of 1)	CpG	2012.0	NM_153776	69195.0	Mm.313244	NM_153776	ENSMUSG00000049036	Tmem121	2410008J05Rik|Hole	transmembrane protein 121	protein-coding	0.731329091764715	1.25015202844213	0.92110818098037	1.59515772788302	1.00148341245311	1.26032247758381	0.750741711572911	1.17440442282124	-0.577095292271787	0.690214281445181	0.996533206832645
Merged-chr16-38710794-2	chr16	38710694	38710894	+	653.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_020260, intron 1 of 11)	intron (NM_020260, intron 1 of 11)	2241.0	NM_020260	12549.0	Mm.370848	NM_020260	ENSMUSG00000022799	Arhgap31	5830477L08Rik|AU041750|Cdgap|D330026I07Rik	Rho GTPase activating protein 31	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-51967611-4	chr11	51967509	51967709	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029976)	promoter-TSS (NM_029976)	-22.0	NM_029976	52626.0	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-79695030-2	chr10	79694930	79695130	+	577.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_008504, exon 5 of 5)	exon (NM_008504, exon 5 of 5)	1204.0	NM_001302499	16904.0	Mm.378960	NM_008504	ENSMUSG00000054206	Gzmm	Lmet1|MMET-1	granzyme M (lymphocyte met-ase 1)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114667819-4	chr11	114667714	114667914	+	810.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023372)	promoter-TSS (NM_023372)	-729.0	NM_023372	67671.0	Mm.238817	NM_023372	ENSMUSG00000057322	Rpl38	0610025G13Rik|Rbt|Ts|Tss	ribosomal protein L38	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-69936634-2	chr8	69936534	69936734	+	778.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286450, intron 2 of 12)	intron (NM_001286450, intron 2 of 12)	-34076.0	NM_023312	67184.0	Mm.21162	NM_023312	ENSMUSG00000036199	Ndufa13	2700054G14Rik|AU022060|CDA016|CGI-39|GRIM-19|Grim19	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-39010233-3	chr18	39010146	39010346	+	956.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361073, intron 1 of 21)	intron (NM_001361073, intron 1 of 21)	17101.0	NM_175164	71302.0	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127347049-2	chr7	127346949	127347149	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CTAAT)n|Simple_repeat|Simple_repeat	-1735.0	NM_146202	233890.0	Mm.23031	NM_146202	ENSMUSG00000047371	Zfp768	BC026432|Znf768	zinc finger protein 768	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-42778092-3	chr19	42777988	42778188	+	843.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362410, intron 2 of 16)	intron (NM_001362410, intron 2 of 16)	558.0	NM_001362410	192236.0	Mm.218381	NM_019424	ENSMUSG00000025188	Hps1	6030422N11Rik|BB405864|Gm21361|Hps|ep	HPS1, biogenesis of lysosomal organelles complex 3 subunit 1	protein-coding	-2.18375600819439	-2.15556918946382	-2.16409311609999	-2.17109492323169	-2.18177734563694	-2.01960173909294	-2.16216348594872	-2.16984160310277	0.759018020146679	0.829933115115583	1
Merged-chr11-80183860-4	chr11	80183771	80183971	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028019)	promoter-TSS (NM_028019)	-1.0	NM_028019	71956.0	Mm.22985	NM_028019	ENSMUSG00000020707	Rnf135	0610037N03Rik|2410006N06Rik	ring finger protein 135	protein-coding	4.99110622698738	4.84423097283342	5.22720765823479	5.27584011650924	4.47229693964877	4.67266526672006	4.41162563422448	5.12348208817681	-0.478189367822428	0.157266319655228	0.613979415008289
Merged-chr11-106657624-2	chr11	106657524	106657724	+	959.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001032378, intron 13 of 13)	B4A|SINE|B4	-44694.0	NM_198292	21763.0	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127967307-4	chr7	127967246	127967446	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347649)	promoter-TSS (NM_001347649)	-133.0	NM_001347649	233908.0	Mm.277680	NM_139149	ENSMUSG00000030795	Fus	D430004D17Rik|D930039C12Rik|Fus1|Tls	fused in sarcoma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-25053490-2	chr2	25053390	25053590	+	554.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020276)	promoter-TSS (NM_020276)	-889.0	NM_001177654	56876.0	Mm.42956	NM_020276	ENSMUSG00000006476	Nsmf	Jacob|Nelf	NMDA receptor synaptonuclear signaling and neuronal migration factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118459314-4	chr11	118459243	118459443	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER73|LTR|ERVL	-4348.0	NR_045902	100126224.0	Mm.441989	NR_045902	ENSMUSG00000086514	Gm11747	-	predicted gene 11747	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59525948-4	chr15	59525840	59526040	+	993.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026746, intron 4 of 6)	intron (NM_026746, intron 4 of 6)	-122714.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-18232169-2	chr14	18232069	18232269	+	573.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011584, intron 1 of 7)	MMERGLN_LTR|LTR|ERV1	6937.0	NM_011584	353187.0	Mm.26587	NM_011584	ENSMUSG00000021775	Nr1d2	RVR|Rev-erb	nuclear receptor subfamily 1, group D, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-30267134-1	chr11	30267034	30267234	+	996.0	f1_balb.idr	Intergenic	Intergenic	-47362.0	NM_175836	20742.0	Mm.123110	NM_009260	ENSMUSG00000020315	Sptbn1	9930031C03Rik|AL033301|SPTB2|Spnb-2|Spnb2|elf1|elf3|mKIAA4049	spectrin beta, non-erythrocytic 1	protein-coding	0.92834022219135	0.537384827611654	0.527232971997881	1.21541674644004	1.23261107178305	0.539657555310853	1.37743173462852	0.520707207603641	0.660855804814249	0.699585000241228	0.998431161219273
Merged-chr5-33358665-4	chr5	33358546	33358746	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021500, intron 2 of 8)	intron (NM_021500, intron 2 of 8)	-20050.0	NR_153108	71101.0	Mm.132178	NM_027674	ENSMUSG00000037355	Uvssa	4933407H18Rik|D330017J19Rik|Kiaa1530|mKIAA1530	UV stimulated scaffold protein A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97114719-2	chr11	97114619	97114819	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_019507, exon 1 of 6)	exon (NM_019507, exon 1 of 6)	612.0	NM_019507	57765.0	Mm.94519	NM_019507	ENSMUSG00000001444	Tbx21	TBT1|Tbet|Tblym	T-box 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-62450011-1	chr15	62449911	62450111	+	632.0	f0_c57.idr	Intergenic	Intergenic	-230560.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-104343341-2	chr8	104343241	104343441	+	879.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_024217, intron 1 of 4)	intron (NM_024217, intron 1 of 4)	2747.0	NM_024217	68119.0	Mm.390108	NM_024217	ENSMUSG00000031875	Cmtm3	9430096L06Rik|AI413895|BNAS2|Cklfsf3	CKLF-like MARVEL transmembrane domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-60173311-4	chr1	60173211	60173411	+	947.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7288.0	NM_173444	269198.0	Mm.205224	NM_173444	ENSMUSG00000073664	Nbeal1	2310076G13Rik|A530050O19Rik|A530083I02Rik|AI662228|ALS2CR17	neurobeachin like 1	protein-coding	3.12159527752214	2.75476946747507	1.90023954760512	3.68055460256996	3.68097606972659	3.52679991831268	2.15281340628504	3.51902889216528	0.521227286116228	0.468971432095396	0.924737467231384
Merged-chr1-194879372-2	chr1	194879272	194879472	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57371.0	NR_039539	100628615.0		NR_039539	ENSMUSG00000092633	Mir3962	mmu-mir-3962|mu-mir-3962	microRNA 3962	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-84988648-3	chr15	84988546	84988746	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033273)	promoter-TSS (NM_001033273)	-675.0	NM_001033273	223739.0	Mm.323925	NM_001033273	ENSMUSG00000036046	5031439G07Rik	AW554572|mKIAA0930	RIKEN cDNA 5031439G07 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-73198490-2	chr14	73198397	73198597	+	890.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009029, intron 26 of 26)	intron (NM_009029, intron 26 of 26)	8354.0	NR_030459	751541.0		NR_030459	ENSMUSG00000076121	Mir687	Mirn687|mir-687|mmu-mir-687	microRNA 687	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-57656205-4	chr18	57656106	57656306	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311063, intron 5 of 5)	L1MB2|LINE|L1	-17621.0	NR_045360	70157.0	Mm.490532	NR_045360		2210409D07Rik	-	RIKEN cDNA 2210409D07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-41736539-2	chr10	41736439	41736639	+	594.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_026643, intron 5 of 10)	MTEb-int|LTR|ERVL-MaLR	-10182.0	NR_152819	100196896.0	Mm.444764	NR_152819		BC048559	-	cDNA sequence BC048559	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-66849286-2	chr4	66849186	66849386	+	564.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4B|LINE|L1	21735.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-25518735-4	chr8	25518635	25518835	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010206)	promoter-TSS (NM_010206)	-24.0	NM_001079909	14182.0	Mm.265716	NM_010206	ENSMUSG00000031565	Fgfr1	AW208770|Eask|FGFR-I|FLG|Fgfr-1|Flt-2|Hspy|MFR|bFGF-R-1|c-fgr	fibroblast growth factor receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-56809568-2	chr10	56809468	56809668	+	645.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	377587.0	NR_152768	102640560.0	Mm.417249	NR_152768		Gm36595	-	predicted gene, 36595	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-69699981-4	chr3	69699858	69700058	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22097.0	NM_133787	97112.0	Mm.21062	NM_133787	ENSMUSG00000027787	Nmd3	C87860	NMD3 ribosome export adaptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-96215242-2	chr10	96215142	96215342	+	793.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10965.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44891733-4	chr7	44891587	44891787	+	852.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001331206, intron 3 of 16)	intron (NM_001331206, intron 3 of 16)	737.0	NM_001331208	75613.0	Mm.157778	NM_029365	ENSMUSG00000002968	Med25	2610034E13Rik|2610529E18Rik|ESTM2	mediator complex subunit 25	protein-coding	3.48755871928317	3.63700987277002	2.32666149232407	3.19954818205126	3.71322764335194	1.68648138227339	3.13780586494216	2.94063942249913	-0.303164416658689	0.679734412586208	0.995376747218388
Merged-chr5-146768500-2	chr5	146768400	146768600	+	766.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011669, intron 2 of 8)	intron (NM_011669, intron 2 of 8)	26456.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-136841255-2	chr4	136841155	136841355	+	548.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5243.0	NM_010142	13844.0	Mm.250981	NM_010142	ENSMUSG00000028664	Ephb2	Cek5|Drt|ETECK|Erk|Hek5|Nuk|Prkm5|Qek5|Sek3|Tyro5	Eph receptor B2	protein-coding	-0.719668593078644	-1.16403364937312	-1.00758898798598	-1.18337273127143	-1.18809839507284	-1.16173278673118	-1.17224760187868	-1.18181157732017	-2.51634718883157	0.443357463893338	1
Merged-chr10-115332611-3	chr10	115332516	115332716	+	981.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MCa|LINE|L1	-17025.0	NM_024454	216344.0	Mm.21936	NM_024454	ENSMUSG00000020132	Rab21	9630024B22	RAB21, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-9174746-2	chr13	9174646	9174846	+	549.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001311117)	TTS (NM_001311117)	80865.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-8669605-2	chr12	8669505	8669705	+	821.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4529.0	NM_001160221	80913.0	Mm.341243	NM_030723	ENSMUSG00000020594	Pum2	5730503J23Rik|Pumm2	pumilio RNA-binding family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-87669892-1	chr4	87669792	87669992	+	549.0	f1_c57bl6.idr	Intergenic	Lx4B|LINE|L1	136431.0	NM_001286158	70122.0	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-6384146-1	chr7	6384046	6384246	+	602.0	f0_balb.idr	intron (NM_175247, intron 1 of 6)	intron (NM_175247, intron 1 of 6)	828.0	NM_175247	22690.0	Mm.127014	NM_175247	ENSMUSG00000062861	Zfp28	2810438M17Rik|Zfp-28|mkr-5	zinc finger protein 28	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127290648-4	chr10	127290545	127290745	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007837)	promoter-TSS (NM_007837)	-148.0	NM_007837	13198.0	Mm.110220	NM_007837	ENSMUSG00000025408	Ddit3	CHOP-10|CHOP10|chop|gadd153	DNA-damage inducible transcript 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-95544857-2	chr10	95544757	95544957	+	556.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_080560, exon 4 of 4)	3' UTR (NM_080560, exon 4 of 4)	14464.0	NR_037212	100526463.0		NR_037212	ENSMUSG00000092867	Mir3058	mir-3058|mmu-mir-3058	microRNA 3058	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-30744664-3	chr13	30744578	30744778	+	900.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4555.0	NM_001347508	16364.0	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-91793568-2	chr12	91793468	91793668	+	999.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-7132.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116617849-4	chr11	116617731	116617931	+	932.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172572, intron 1 of 18)	intron (NM_172572, intron 1 of 18)	6421.0	NM_001167680	217344.0	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-132151803-4	chr2	132151695	132151895	+	961.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-6475.0	NM_001355430	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-64725515-2	chr17	64725415	64725615	+	978.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008549, intron 16 of 21)	intron (NM_008549, intron 16 of 21)	-41596.0	NR_105051	101202683.0	Mm.393309	NR_105051		Dreh	-	down-regulated in hepatocellular carcinoma	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-100086798-2	chr15	100086698	100086898	+	934.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_037311, intron 2 of 3)	B3A|SINE|B2	48134.0	NM_001159361	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-143054489-2	chr7	143054389	143054589	+	775.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_110354)	promoter-TSS (NR_110354)	-803.0	NR_110354	97423.0	Mm.5250	NM_133790	ENSMUSG00000059277	R74862	-	expressed sequence R74862	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120534631-2	chr8	120534531	120534731	+	673.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198671, intron 1 of 15)	intron (NM_198671, intron 1 of 15)	-1226.0	NM_001145897	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-52429630-3	chr4	52429533	52429733	+	949.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_045175)	TTS (NR_045175)	9331.0	NR_045175	72648.0	Mm.391869	NR_045175	ENSMUSG00000085763	Smc2os	2700081L22Rik	structural maintenance of chromosomes 2, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-11209816-1	chr12	11209716	11209916	+	737.666687	f0_balb.idr	promoter-TSS (NM_019544)	promoter-TSS (NM_019544)	-868.0	NM_019544	56184.0	Mm.117113	NM_019544	ENSMUSG00000047002	Msgn1	Msgn|pMsgn1	mesogenin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-93346078-2	chr1	93345992	93346192	+	947.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_105867)	promoter-TSS (NR_105867)	0.0	NR_105867	102465544.0		NR_105867	ENSMUSG00000106302	Mir6902	mmu-mir-6902	microRNA 6902	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-55824224-4	chr12	55824127	55824327	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-2711.0	NM_001286263	56784.0	Mm.292180	NM_019994	ENSMUSG00000021027	Ralgapa1	2310003F20Rik|4930400K19Rik|AI563624|GRIPE|Garnl1|Tulip1|mKIAA0884	Ral GTPase activating protein, alpha subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135570618-3	chr5	135570512	135570712	+	933.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_019577, exon 3 of 3)	3' UTR (NM_019577, exon 3 of 3)	2437.0	NM_019577	56221.0	Mm.31505	NM_019577	ENSMUSG00000004814	Ccl24	CKb-6|MPIF-2|Scya24	chemokine (C-C motif) ligand 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101556801-2	chr11	101556701	101556901	+	637.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008676, intron 4 of 23)	intron (NM_008676, intron 4 of 23)	4147.0	NM_001252223	17966.0	Mm.784	NM_008676	ENSMUSG00000017119	Nbr1	mKIAA0049	neighbor of Brca1 gene 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81406062-2	chr10	81405962	81406162	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026756, intron 7 of 8)	intron (NM_026756, intron 7 of 8)	-3513.0	NR_152732	102634174.0	Mm.392213	NR_152732	ENSMUSG00000085327	Gm16104	-	predicted gene 16104	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-64078247-2	chr15	64078147	64078347	+	788.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A1|LTR|ERVL-MaLR	-17799.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-51995750-2	chr14	51995650	51995850	+	621.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145921, intron 11 of 23)	intron (NM_001145921, intron 11 of 23)	-6921.0	NR_045728	100502764.0	Mm.437219	NR_045728	ENSMUSG00000097633	Gm16617	-	predicted gene, 16617	ncRNA	0.901399598784384	0.433824794926343	0.425862599964364	1.07111759875735	0.912132279866346	1.07741336633351	0.427621348013518	0.420776492440943	0.0144045456977507	0.993645985471478	1
Merged-chr10-41883911-4	chr10	41883841	41884041	+	818.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162908, intron 1 of 9)	intron (NM_001162908, intron 1 of 9)	-3498.0	NM_001013370	140742.0	Mm.139418	NM_001013370	ENSMUSG00000038332	Sesn1	1110002G11Rik|AU044290|Pa26|Sest1	sestrin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-77830330-2	chr1	77830230	77830430	+	886.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-315242.0	NM_007936	13838.0	Mm.400747	NM_007936	ENSMUSG00000026235	Epha4	2900005C20Rik|AI385584|Cek8|Hek8|Sek|Sek1|Tyro1|rb	Eph receptor A4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-17734643-2	chr10	17734543	17734743	+	800.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1G|LTR|ERVL-MaLR	11415.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150087755-2	chr4	150087655	150087855	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_177366, exon 1 of 4)	exon (NM_177366, exon 1 of 4)	252.0	NM_177366	269604.0	Mm.219307	NM_177366	ENSMUSG00000047875	Gpr157	F730108M23Rik	G protein-coupled receptor 157	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-103966485-4	chr11	103966387	103966587	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001304574)	promoter-TSS (NM_001304574)	-238.0	NM_001304574	11841.0	Mm.5061	NM_007477	ENSMUSG00000062421	Arf2	-	ADP-ribosylation factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-34921358-3	chr19	34921260	34921460	+	861.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001362434)	promoter-TSS (NM_001362434)	-998.0	NM_001362434	240641.0	Mm.278471	NM_183046	ENSMUSG00000024795	Kif20b	33cex|C330014J10Rik|MPP1|Mphosph1|magoo	kinesin family member 20B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-11217230-2	chr8	11217130	11217330	+	768.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009931, intron 39 of 51)	intron (NM_009931, intron 39 of 51)	-95575.0	NM_009932	12827.0	Mm.181021	NM_009932	ENSMUSG00000031503	Col4a2	Col4a-2	collagen, type IV, alpha 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53094489-2	chr4	53094389	53094589	+	974.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 8 of 49)	intron (NM_013454, intron 8 of 49)	65406.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-73586601-2	chr2	73586501	73586701	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153820, intron 1 of 1)	MTC|LTR|ERVL-MaLR	1741.0	NR_153820	102633437.0		NR_153820		Chrna1os	Gm13705|Gm31264	cholinergic receptor, nicotinic, alpha polypeptide 1 (muscle), opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-69993149-3	chr7	69993049	69993249	+	608.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	344673.0	NR_131145	624549.0	Mm.116344	NR_131144	ENSMUSG00000109097	Gm29683	Gm44536	predicted gene, 29683	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-102522513-3	chr9	102522425	102522625	+	862.577759	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024291, intron 4 of 10)	intron (NM_024291, intron 4 of 10)	16387.0	NM_024291	16716.0	Mm.101692	NM_024291	ENSMUSG00000035606	Ky	CD1|D9Mgc44e|ky	kyphoscoliosis peptidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45366209-2	chr7	45366109	45366309	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015480)	promoter-TSS (NR_015480)	48.0	NR_015480	50994.0	Mm.389897	NM_016664	ENSMUSG00000091510	Mtag2	MAG	metastasis associated gene 2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-103856257-6	chr5	103855963	103856163	+	774.68335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001080798)	TTS (NM_001080798)	55196.0	NM_001359987	246293.0	Mm.179871	NM_178741	ENSMUSG00000029312	Klhl8	2310001P09Rik|D5Ertd431e	kelch-like 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-117403917-4	chr2	117403817	117404017	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61040.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-58512195-4	chr13	58512104	58512304	+	978.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR11A2|LTR|ERVK	98673.0	NM_022317	114304.0	Mm.18188	NM_022317	ENSMUSG00000021553	Slc28a3	Cnt3	solute carrier family 28 (sodium-coupled nucleoside transporter), member 3	protein-coding	-0.286084970059043	0.0542428518556491	-0.115160242277294	-0.281344858339498	-0.285382230428592	-0.273879603661704	0.152273783365842	0.0034989527286681	0.635396351933108	0.785650023053293	1
Merged-chr11-11781930-4	chr11	11781848	11782048	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27014.0	NM_021891	60530.0	Mm.236114	NM_021891	ENSMUSG00000035455	Fignl1	-	fidgetin-like 1	protein-coding	0.866148376442008	0.722767888737554	0.706211233089458	1.94165729420537	0.873100701682241	1.18480877941342	1.95340653481339	1.09867677728465	0.513907840915951	0.714803871804963	0.998431161219273
Merged-chr10-88622295-4	chr10	88622196	88622396	+	958.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17144.0	NM_175418	109272.0	Mm.147208	NM_175418	ENSMUSG00000020061	Mybpc1	8030451F13Rik	myosin binding protein C, slow-type	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-3283096-2	chr18	3282996	3283196	+	612.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013498, intron 4 of 6)	intron (NM_013498, intron 4 of 6)	-1349.0	NM_001110855	12916.0	Mm.5244	NM_013498	ENSMUSG00000063889	Crem	ICER|ICERI	cAMP responsive element modulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-161897385-4	chr1	161897289	161897489	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20707.0	NM_001357402	226551.0	Mm.170002	NM_172645	ENSMUSG00000040297	Suco	4732491B11|AI848100|AU016931|Opt	SUN domain containing ossification factor	protein-coding	4.95709117664193	3.59892886179017	3.46066030064332	5.09717568393328	5.25814159116874	4.86941662911625	5.57127464789665	5.85476629547831	1.12355025560726	0.0078753043434693	0.091914301082631
Merged-chr3-137864443-4	chr3	137864343	137864543	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001316995)	promoter-TSS (NM_001316995)	-44.0	NM_001316995	51788.0	Mm.117541	NM_016750	ENSMUSG00000037894	H2afz	H2A.Z|H2a.z-1	H2A histone family, member Z	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-118506793-3	chr14	118506695	118506895	+	854.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163676, intron 26 of 29)	intron (NM_001163676, intron 26 of 29)	85677.0	NR_105815	102465208.0		NR_105815	ENSMUSG00000098433	Mir6391	Gm27914|mmu-mir-6391	microRNA 6391	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-86241788-4	chr12	86241707	86241907	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001324488)	promoter-TSS (NM_001324488)	-51.0	NM_027405	70373.0	Mm.252967	NM_027405	ENSMUSG00000021254	Gpatch2l	1700020O03Rik|4732487G21Rik|A630090I05Rik|Kiaa1152	G patch domain containing 2 like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-95868990-4	chr13	95868833	95869033	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027711, intron 1 of 35)	intron (NM_027711, intron 1 of 35)	22989.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	5.76438057231533	6.59558905416228	6.21300131691342	5.87934303423044	4.95157047903338	4.57041011508994	5.10687619120741	4.84171958371009	-1.42527759935196	9.0157625627262e-07	5.96531907505086e-05
Merged-chr12-35047110-4	chr12	35047017	35047217	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001014973)	promoter-TSS (NM_001014973)	-72.0	NM_001014973	217463.0	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	2.90712568460347	3.27353651198741	3.2635135012763	3.34889748363891	4.04159538130059	3.05802843368589	3.18685251107426	4.13863115362739	0.781950389126102	0.171451587414241	0.638977466813629
Merged-chr7-44974545-2	chr7	44974458	44974658	+	939.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252470, intron 1 of 18)	intron (NM_001252470, intron 1 of 18)	293.0	NM_001357670	78070.0	Mm.231465	NM_153679	ENSMUSG00000007783	Cpt1c	6530437J22Rik|9630004I06Rik|CPT I-C|CPT IC|CPT1-B|CPTI-B	carnitine palmitoyltransferase 1c	protein-coding	-0.55273924810426	-0.54035996916012	-0.544409727515121	0.274109757997916	-0.399307688602415	-0.539447882231856	-0.543516032528658	-0.373199296054966	-1.77055147394689	0.497346793704193	1
Merged-chr6-122650074-1	chr6	122649974	122650174	+	573.0	f1_balb.idr	Intergenic	B3|SINE|B2	23650.0	NM_139218	73708.0	Mm.27982	NM_139218	ENSMUSG00000046323	Dppa3	2410075G02Rik|PCG7|PGC7|Stella	developmental pluripotency-associated 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-110776217-4	chr12	110776116	110776316	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347428, intron 1 of 2)	intron (NM_001347428, intron 1 of 2)	38284.0	NM_001347428	69641.0	Mm.475762	NM_027149	ENSMUSG00000037957	Wdr20	2310040A13Rik|AI549910|Wdr20a	WD repeat domain 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-102034320-4	chr5	102034241	102034441	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 2 of 66)	intron (NM_172882, intron 2 of 66)	35580.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135949769-2	chr4	135949669	135949869	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357530, intron 1 of 9)	intron (NM_001357530, intron 1 of 9)	2363.0	NM_001357530	15356.0	Mm.482102	NM_008254	ENSMUSG00000028672	Hmgcl	AW476067|HL	3-hydroxy-3-methylglutaryl-Coenzyme A lyase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44708516-5	chr9	44708410	44708610	+	631.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153537, intron 9 of 21)	CpG	26688.0	NM_153537	102693.0	Mm.28639	NM_153537	ENSMUSG00000048537	Phldb1	AU041016|D330037A14Rik|Ll5a	pleckstrin homology like domain, family B, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-70847245-4	chr17	70847142	70847342	+	916.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164077)	promoter-TSS (NM_001164077)	-465.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118740136-4	chr11	118740033	118740233	+	812.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024931, intron 2 of 14)	intron (NM_001024931, intron 2 of 14)	20908.0	NM_001285438	52897.0	Mm.341103	NM_001024931	ENSMUSG00000025576	Rbfox3	Fox-3|Hrnbp3|NeuN|Neuna60	RNA binding protein, fox-1 homolog (C. elegans) 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-27675815-4	chr15	27675713	27675913	+	994.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198301, intron 1 of 6)	intron (NM_198301, intron 1 of 6)	5729.0	NM_001242424	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-30572488-3	chr3	30572364	30572564	+	958.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR19-int|LTR|ERVK	27406.0	NM_029690	76652.0	Mm.116928	NM_029690	ENSMUSG00000037737	Actrt3	1700119I24Rik|ARP-T3|Arpm1	actin related protein T3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-147660053-2	chr5	147659953	147660153	+	761.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010228, intron 10 of 29)	intron (NM_010228, intron 10 of 29)	65935.0	NM_010228	14254.0	Mm.389712	NM_010228	ENSMUSG00000029648	Flt1	AI323757|Flt-1|VEGFR-1|VEGFR1|sFlt1	FMS-like tyrosine kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-143951311-2	chr2	143951211	143951411	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_024281, intron 19 of 23)	intron (NM_024281, intron 19 of 23)	35980.0	NM_019771	56431.0	Mm.28919	NM_019771	ENSMUSG00000015932	Dstn	2610043P17Rik|ADF|AU042046|Dsn|corn1|sid23p	destrin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-32057290-2	chr4	32057190	32057390	+	773.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	93183.0	NM_172688	26409.0	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding	-0.285665249410484	-0.272681550705177	0.279486641705312	-0.280227010429269	0.27285465575339	-0.2717194565507	-0.099197196108862	-0.279653893442566	0.327907864529917	0.894138813473067	1
Merged-chr10-128773176-2	chr10	128773076	128773276	+	632.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-17734.0	NM_001164197	58223.0	Mm.131266	NM_021412	ENSMUSG00000025355	Mmp19	-	matrix metallopeptidase 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-25470393-4	chr14	25470305	25470505	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	11220.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-67289864-6	chr18	67289767	67289967	+	727.799988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053261, intron 1 of 7)	intron (NM_053261, intron 1 of 7)	644.0	NM_053261	114663.0	Mm.34079	NM_053261	ENSMUSG00000024525	Impa2	2210415D20Rik|AI326924|AW259601	inositol (myo)-1(or 4)-monophosphatase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153109929-2	chr2	153109900	153110100	+	588.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001172117, intron 1 of 12)	intron (NM_001172117, intron 1 of 12)	1532.0	NM_010407	15162.0	Mm.715	NM_010407	ENSMUSG00000003283	Hck	AI849071|Bmk	hemopoietic cell kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99144540-2	chr7	99144440	99144640	+	797.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3396.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-24173391-4	chr10	24173275	24173475	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016797, intron 2 of 9)	intron (NM_016797, intron 2 of 9)	24058.0	NM_016797	53331.0	Mm.248042	NM_016797	ENSMUSG00000019998	Stx7	AI315064|AI317144|AW107239|Syn7	syntaxin 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-57489166-2	chr8	57489066	57489266	+	790.666687	f1_balb.idr|f1_c57bl6.idr	intron (NR_126553, intron 1 of 3)	ORR1A2-int|LTR|ERVL-MaLR	1203.0	NR_126555	78353.0	Mm.426240	NR_126553	ENSMUSG00000096917	2500002B13Rik	-	RIKEN cDNA 2500002B13 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-18492359-2	chr1	18492259	18492459	+	753.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17B|LTR|ERVK	-227221.0	NM_001040027	77673.0	Mm.99530	NM_183124	ENSMUSG00000067773	Defb41	9230102D03Rik|BD-17|Bd-41|Defb16|Defb17|Gm15386	defensin beta 41	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-115487748-2	chr9	115487642	115487842	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger7|DNA|TcMar-Tigger	105923.0	NR_130329	100316675.0		NR_130329	ENSMUSG00000080409	Mir467h	Mirn467h|mmu-mir-467h	microRNA 467h	ncRNA	2.2095417551078	2.87519438705422	2.855619442397	2.21415137819367	1.8561564525724	1.39612298271137	2.1618000119577	2.34212206551589	-1.35667628869988	0.125873379671818	0.555810952405876
Merged-chr1-72711922-4	chr1	72711843	72712043	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009084, intron 2 of 3)	intron (NM_009084, intron 2 of 3)	683.0	NM_009084	19981.0	Mm.21529	NM_009084	ENSMUSG00000046330	Rpl37a	-	ribosomal protein L37a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41320421-2	chr19	41320321	41320521	+	730.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 8 of 16)	intron (NM_031376, intron 8 of 16)	-56417.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-32292700-4	chr19	32292614	32292814	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 2 of 9)	intron (NM_144792, intron 2 of 9)	56602.0	NM_001168525	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-57459443-2	chr17	57459343	57459543	+	598.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355722, intron 17 of 22)	RMER1B|Other|Other	85871.0	NM_001104591	224916.0	Mm.469889	NM_001104591	ENSMUSG00000090655	Vmn2r120	EG224916	vomeronasal 2, receptor 120	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-153751818-4	chr1	153751627	153751827	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011882, intron 1 of 8)	ORR1A2|LTR|ERVL-MaLR	2301.0	NM_011882	24014.0	Mm.259254	NM_011882	ENSMUSG00000066800	Rnasel	E230029I04Rik	ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-55473957-4	chr1	55473860	55474060	+	830.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114663, intron 1 of 5)	ORR1E|LTR|ERVL-MaLR	68014.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	2.28590044375374	2.24311184746721	1.07801519860287	1.28497339886327	1.90482487268671	1.75066482247328	1.08323125611067	2.10748301024417	-0.222017092960923	0.850266785125632	0.998431161219273
Merged-chr17-87083878-4	chr17	87083754	87083954	+	962.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23825.0	NM_019654	56468.0	Mm.126885	NM_019654	ENSMUSG00000037104	Socs5	1810018L08Rik|Cish5|mKIAA0671	suppressor of cytokine signaling 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-23661394-1	chr5	23661294	23661494	+	563.0	f0_balb.idr	intron (NM_001359174, intron 2 of 16)	intron (NM_001359174, intron 2 of 16)	14573.0	NM_001359174	20817.0	Mm.288728	NM_009274	ENSMUSG00000062604	Srpk2	AW226533|AW492537|AW547358|Wbp6|mSRPK2	serine/arginine-rich protein specific kinase 2	protein-coding	-0.014998963752091	0.494678932195915	-0.00378369289864272	-0.00799786668699085	0.468580684695511	0.00290579213096692	-0.00257935645000903	0.630071531712593	1.25201666075983	0.579400979050551	1
Merged-chr9-44287478-2	chr9	44287378	44287578	+	798.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_138955, intron 1 of 14)	intron (NM_138955, intron 1 of 14)	766.0	NM_138955	192663.0	Mm.101876	NM_138955	ENSMUSG00000032131	Abcg4	6430517O04Rik	ATP binding cassette subfamily G member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-61074818-4	chr18	61074734	61074934	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008809, intron 14 of 22)	Charlie15b|DNA|hAT-Charlie	29684.0	NM_008809	18596.0	Mm.4146	NM_008809	ENSMUSG00000024620	Pdgfrb	AI528809|CD140b|PDGFR-1|Pdgfr	platelet derived growth factor receptor, beta polypeptide	protein-coding	5.87750244991131	5.91675204398292	6.17445331735488	6.47612700245601	5.2141114393894	5.13731775144914	3.67679659780732	5.10400911653633	-1.3826495192642	1.85951553299802e-05	0.000765805515958017
Merged-chr7-142443567-2	chr7	142443467	142443667	+	908.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009405, intron 3 of 5)	intron (NM_009405, intron 3 of 5)	1099.0	NM_009405	21953.0	Mm.39469	NM_009405	ENSMUSG00000031097	Tnni2	-	troponin I, skeletal, fast 2	protein-coding	-1.0197847170788	-0.997907469650695	-1.01122437597739	-0.133164474989291	-1.01910344542556	-0.995021640496898	-1.0082097202833	-1.01474285911258	-3.16350991712545	0.326819850740887	1
Merged-chr10-54529853-2	chr10	54529753	54529953	+	815.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPEY3-int|LTR|ERVK	453931.0	NR_038016	100502920.0	Mm.403982	NR_038016	ENSMUSG00000097069	Gm16998	-	predicted gene, 16998	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19364053-4	chr7	19363947	19364147	+	847.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001010836, intron 1 of 12)	intron (NM_001010836, intron 1 of 12)	2831.0	NM_001010836	333654.0	Mm.333640	NM_001010836	ENSMUSG00000040734	Ppp1r13l	AV260376|IASPP|Nkip1|wa3	protein phosphatase 1, regulatory (inhibitor) subunit 13 like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80434095-4	chr10	80433992	80434192	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164151)	promoter-TSS (NM_001164151)	-439.0	NM_001164148	21423.0	Mm.3406	NM_011548	ENSMUSG00000020167	Tcf3	A1|AA408400|ALF2|AW209082|E12|E12/E47|E2A|E47|KA1|ME2|Pan1|Pan2|TCF-3|Tcfe2a|VDIR|bHLHb21	transcription factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-64185389-3	chr15	64185293	64185493	+	990.944458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 5 of 28)	Lx9|LINE|L1	-124945.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	3.70034908580331	4.03305887330085	3.67592965091114	4.10919845740624	1.55010755397656	2.29852484471834	1.4141253922757	1.65837947406742	-4.10419668872255	4.95844554964302e-07	3.62752620150103e-05
Merged-chr7-19472601-4	chr7	19472491	19472691	+	978.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14097.0	NM_172279	232944.0	Mm.260504	NM_172279	ENSMUSG00000030397	Mark4	2410090P21Rik|C79806|Markl1	MAP/microtubule affinity regulating kinase 4	protein-coding	2.0166747193476	3.17606214398891	2.92584052965895	2.59022504002378	2.27654439922184	2.28750308241985	1.37812264305509	1.98614653067292	-1.55109049873804	0.0739560965153184	0.410891375174802
Merged-chr18-40308226-4	chr18	40308101	40308301	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026135, intron 1 of 1)	intron (NM_026135, intron 1 of 1)	49840.0	NM_026135	383348.0	Mm.76366	NM_026135	ENSMUSG00000051401	Kctd16	4930434H12Rik|Gm1267	potassium channel tetramerisation domain containing 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-74715717-4	chr1	74715620	74715820	+	957.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024264, intron 1 of 8)	intron (NM_024264, intron 1 of 8)	2185.0	NM_024264	104086.0	Mm.85083	NM_024264	ENSMUSG00000026170	Cyp27a1	1300013A03Rik|Cyp27	cytochrome P450, family 27, subfamily a, polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167805158-4	chr2	167805070	167805270	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	113993.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-121040060-2	chr4	121039960	121040160	+	843.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_007741, intron 1 of 31)	intron (NM_007741, intron 1 of 31)	494.0	NM_007741	12840.0	Mm.269384	NM_007741	ENSMUSG00000028626	Col9a2	AI427499|Col9a-2	collagen, type IX, alpha 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126854013-2	chr8	126853913	126854113	+	599.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	4993.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191955354-4	chr1	191955254	191955454	+	997.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22016.0	NM_001177900	74023.0	Mm.274393	NM_023727	ENSMUSG00000049353	Rd3	3322402L07Rik|rd-3|rd3	retinal degeneration 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-25471344-4	chr14	25471259	25471459	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	12174.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	5.65596896159636	4.68663906968127	4.86229820901975	5.12530326857323	5.1549295278318	4.04545218167209	4.62287276455911	4.53764168300758	-0.582476288739253	0.121541796870232	0.547083517037748
Merged-chr5-122131816-4	chr5	122131736	122131936	+	973.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183307, intron 2 of 12)	intron (NM_183307, intron 2 of 12)	3057.0	NM_001289811	330188.0	Mm.386907	NM_183307	ENSMUSG00000043036	Ccdc63	4921511C16Rik	coiled-coil domain containing 63	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-48833863-4	chr11	48833707	48833907	+	942.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053166, intron 1 of 6)	intron (NM_053166, intron 1 of 6)	-3664.0	NM_001347446	94089.0	Mm.390335	NM_053166	ENSMUSG00000040350	Trim7	AI790312	tripartite motif-containing 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83443903-2	chr11	83443803	83444003	+	559.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001320300, exon 7 of 8)	exon (NM_001320300, exon 7 of 8)	6209.0	NM_025492	66330.0	Mm.44800	NM_025492	ENSMUSG00000035085	1700020L24Rik	-	RIKEN cDNA 1700020L24 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-172317429-1	chr1	172317329	172317529	+	706.0	f1_balb.idr	exon (NM_080419, exon 3 of 7)	exon (NM_080419, exon 3 of 7)	5062.0	NM_080419	140559.0	Mm.271717	NM_080419	ENSMUSG00000038034	Igsf8	ESTM34|EWI-2|KCT-4|PGRL	immunoglobulin superfamily, member 8	protein-coding	-1.29633872064033	-1.26720680975202	-1.27768629845203	-1.28629446248818	-0.70879630402184	-1.2649358608345	-1.2753139719142	-1.28475360524138	2.50884260628271	0.468217847016783	1
Merged-chr17-24896099-2	chr17	24895999	24896199	+	618.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019730)	promoter-TSS (NM_019730)	-401.0	NM_019730	79059.0	Mm.430765	NM_019730	ENSMUSG00000073435	Nme3	1810009F08Rik|AI413736|DR-nm23|Ndk3|Nm23-DR|Nm23-M3	NME/NM23 nucleoside diphosphate kinase 3	protein-coding	-0.366853823055214	-0.817757735032605	-0.82134278401234	-0.407751149730632	-0.826731349290006	-0.815034507983735	-0.820702062995803	-0.823189746159009	-3.02586318656905	0.311514758661045	1
Merged-chr4-41314980-4	chr4	41314872	41315072	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026893)	promoter-TSS (NM_026893)	-71.0	NM_026893	68970.0	Mm.28891	NM_026893	ENSMUSG00000028436	Dcaf12	1500001L20Rik|5830424K06Rik|AA420338|AI851081|Wdr40a	DDB1 and CUL4 associated factor 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-64724735-2	chr17	64724635	64724835	+	615.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008549, intron 16 of 21)	Lx8|LINE|L1	-42376.0	NR_105051	101202683.0	Mm.393309	NR_105051		Dreh	-	down-regulated in hepatocellular carcinoma	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80343097-4	chr7	80342994	80343194	+	988.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026812)	promoter-TSS (NM_026812)	-43.0	NM_026812	68695.0	Mm.21171	NM_026812	ENSMUSG00000030532	Hddc3	1110033O09Rik|C86475|MESH1	HD domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-67590460-1	chr3	67590360	67590560	+	604.0	f1_c57bl6.idr	intron (NM_025813, intron 6 of 15)	(TCCA)n|Simple_repeat|Simple_repeat	7692.0	NM_025813	66868.0	Mm.491153	NM_025813	ENSMUSG00000027775	Mfsd1	1200003O06Rik	major facilitator superfamily domain containing 1	protein-coding	0.113581774201705	0.611780138106451	0.569511194395787	0.417483943184206	0.114646004299512	0.621208716930336	0.126296986154011	0.121495896563165	-1.28981190483085	0.529231447085183	1
Merged-chr16-71837709-2	chr16	71837609	71837809	+	559.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVL-int|LTR|ERVL	396618.0	NR_131116	319533.0	Mm.373754	NR_131115		8030451O07Rik	-	RIKEN cDNA 8030451O07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-91588498-4	chr12	91588420	91588620	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175335, intron 1 of 8)	CpG	1129.0	NM_031391	83602.0	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-62380208-2	chr9	62380108	62380308	+	567.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38865.0	NM_009672	11737.0	Mm.269088	NM_009672	ENSMUSG00000032249	Anp32a	Anp32|I1PP2A|LANP|PHAP1|W91701|pp32	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-164942073-2	chr2	164941973	164942173	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6146.0	NM_013599	17395.0	Mm.4406	NM_013599	ENSMUSG00000017737	Mmp9	AW743869|B/MMP9|Clg4b|Gel B|MMP-9|pro-MMP-9	matrix metallopeptidase 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-149137523-4	chr4	149137395	149137595	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027263, exon 1 of 5)	exon (NM_027263, exon 1 of 5)	105.0	NM_027263	69928.0	Mm.260893	NM_027263	ENSMUSG00000073705	Cenps	2610040C18Rik|2810407L01Rik|Apitd1|CENP-S	centromere protein S	protein-coding	5.34437459077286	5.99803300908956	5.92101482375633	5.86757712320001	5.70119012030974	5.19703109221851	5.54672606179227	5.01340669432713	-0.453852321020855	0.107785958426132	0.513452592322685
Merged-chr18-30513808-4	chr18	30513697	30513897	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	240932.0	NR_151699	225326.0	Mm.194127	NM_181414	ENSMUSG00000033628	Pik3c3	5330434F23Rik|Vps34	phosphatidylinositol 3-kinase catalytic subunit type 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105364201-2	chr8	105364101	105364301	+	577.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081332, intron 14 of 15)	intron (NM_001081332, intron 14 of 15)	-11180.0	NM_001081333	102075.0	Mm.32034	NM_175321	ENSMUSG00000014782	Plekhg4	4931414L13Rik|AI448583|mFLJ00068	pleckstrin homology domain containing, family G (with RhoGef domain) member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-95753581-2	chr16	95753481	95753681	+	641.125	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51174.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31402212-4	chr14	31402114	31402314	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347585, intron 2 of 7)	L1M3|LINE|L1	15463.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3377120-4	chr19	3377000	3377200	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013495, intron 14 of 18)	intron (NM_013495, intron 14 of 18)	-11757.0	NM_001039658	17771.0	Mm.209941	NM_010841	ENSMUSG00000024905	Tesmin	Mtl5	testis expressed metallothionein like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99382656-2	chr7	99382556	99382756	+	952.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_201352, intron 1 of 17)	intron (NM_201352, intron 1 of 17)	1138.0	NM_001362166	233552.0	Mm.286317	NM_201352	ENSMUSG00000035314	Gdpd5	BC024955|Gde2	glycerophosphodiester phosphodiesterase domain containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-43130573-2	chr5	43130473	43130673	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-102890.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-67154041-2	chr15	67153941	67154141	+	558.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009177, intron 1 of 8)	intron (NM_009177, intron 1 of 8)	22841.0	NM_009177	20442.0	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	1.92313858757035	2.03343507786278	2.58455923940419	1.15981799953316	1.93982111475286	2.04913008803367	2.60578632902493	1.1639045504273	0.0406680578124222	0.970111327942179	0.998431161219273
Merged-chr4-149779130-4	chr4	149778953	149779153	+	870.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-4786.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-54997124-1	chr13	54997024	54997224	+	1000.0	f1_c57bl6.idr	intron (NM_001311128, intron 5 of 14)	intron (NM_001311128, intron 5 of 14)	23695.0	NM_001206390	212032.0	Mm.267479	NM_001033245	ENSMUSG00000025877	Hk3	HK III|HK-III	hexokinase 3	protein-coding	1.15348081794974	0.441588384144371	0.431018962089129	1.56411373520293	0.975151841925221	0.443949252545328	0.645474615710331	0.424203719968773	-1.6754522919151	0.340379888551135	0.840985121439433
Merged-chr8-77452675-2	chr8	77452575	77452775	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030113, intron 1 of 22)	intron (NM_030113, intron 1 of 22)	-64381.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-81439521-4	chr13	81439429	81439629	+	798.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_054053, exon 67 of 90)	exon (NM_054053, exon 67 of 90)	193615.0	NM_054053	110789.0	Mm.288694	NM_054053	ENSMUSG00000069170	Adgrv1	Frings|Gpr98|Mass1|Mgr1|VLGR1	adhesion G protein-coupled receptor V1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-55363560-6	chr1	55363500	55363700	+	921.257935	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029267)	promoter-TSS (NM_029267)	-131.0	NM_029267	75388.0	Mm.483408	NM_029267	ENSMUSG00000025977	Boll	4930554P13Rik|4930597B14Rik	boule homolog, RNA binding protein	protein-coding	2.27604900602135	2.07857111539338	1.13447019251194	1.52775388122207	1.96216351750277	2.32076474045502	2.02149845723677	1.11837070556343	0.237636841060521	0.832999167887229	0.998431161219273
Merged-chr13-98814708-4	chr13	98814663	98814863	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172591, intron 1 of 25)	CpG	686.0	NM_172591	218503.0	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	2.38260850194836	1.25240951773	1.69755192860812	2.10652830394704	2.12234200171675	2.79922714902631	2.85539566651815	1.19672524978356	1.05872774094416	0.307768645320429	0.808836493842255
Merged-chr13-69538474-4	chr13	69538375	69538575	+	972.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4611.0	NM_001169131	210106.0	Mm.315959	NM_198600	ENSMUSG00000034575	Papd7	LAK-1|POLK|Pols|TRF4|TRF4-1	PAP associated domain containing 7	protein-coding	4.43233745536627	4.4502023397563	4.15485663145501	5.1042264985669	6.13112102193573	6.03574679454283	6.88419736747618	5.7255290447003	1.90462831916252	7.88898043437733e-09	1.00347472893254e-06
Merged-chr9-13581445-3	chr9	13581402	13581602	+	902.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-38487.0	NM_001013813	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	0.952483816351652	0.334456225711502	1.36458550140362	0.317366188838397	1.0562632780924	0.336601372509152	0.326988568797925	0.318681480092975	-1.28852417110555	0.506827694902127	1
Merged-chr3-90243540-1	chr3	90243440	90243640	+	562.0	f1_balb.idr	promoter-TSS (NM_001307935)	promoter-TSS (NM_001307935)	-28.0	NM_030080	78284.0	Mm.299952	NM_030080	ENSMUSG00000027938	Creb3l4	1700012K17Rik|5330432F22Rik|AIBZIP|AV040530|AV258827|CREB4|JAL|TISP40|acre1	cAMP responsive element binding protein 3-like 4	protein-coding	-0.898443344149008	-0.883064818360745	-0.891077179145227	-0.893838745863429	-0.736208673427474	-0.0972352593783111	-0.890289402794229	-0.893355649448197	3.24588741766978	0.264981069630163	1
Merged-chr7-55912319-2	chr7	55912184	55912384	+	842.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011370, intron 22 of 30)	ORR1D2|LTR|ERVL-MaLR	50209.0	NM_001256133	93790.0	Mm.37249	NM_023647	ENSMUSG00000030452	Nipa2	2600017P10Rik|3830408P04Rik|AB041581	non imprinted in Prader-Willi/Angelman syndrome 2 homolog (human)	protein-coding	0.649647505947935	0.0666431024794372	0.0598702549853026	0.383843725998201	0.0471393551200563	0.0681638598945814	0.976289650435692	0.0555345079811314	0.336751659007753	0.875979604234899	1
Merged-chr12-40271406-4	chr12	40271297	40271497	+	934.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	48033.0	NR_045157	629820.0	Mm.435540	NR_045157	ENSMUSG00000035983	Gm7008	EG629820	predicted gene 7008	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-117481890-4	chr12	117481791	117481991	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34588.0	NM_175930	217944.0	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-12543066-2	chr11	12542966	12543166	+	605.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-78106.0	NM_001282993	12808.0	Mm.22847	NM_172496	ENSMUSG00000020173	Cobl	-	cordon-bleu WH2 repeat	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-182909290-3	chr1	182909160	182909360	+	851.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45528.0	NM_016928	53791.0	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-18898123-4	chr2	18898022	18898222	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008845, intron 3 of 9)	intron (NM_008845, intron 3 of 9)	-96304.0	NR_131254	66774.0	Mm.87075	NR_131254	ENSMUSG00000097638	Carlr	4933439G12Rik|Carl	cardiac and apoptosis-related long non-coding RNA	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90489869-2	chr2	90489769	90489969	+	751.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	-10695.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-50554856-4	chr9	50554740	50554940	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001357222, exon 1 of 6)	5' UTR (NM_001357222, exon 1 of 6)	140.0	NM_001357222	16173.0	Mm.1410	NM_008360	ENSMUSG00000039217	Il18	Igif|Il-18	interleukin 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-54910063-4	chr1	54909949	54910149	+	841.908325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081433, intron 1 of 27)	intron (NM_001081433, intron 1 of 27)	16338.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-78868892-8	chr2	78868788	78868988	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009454)	promoter-TSS (NM_009454)	-159.0	NM_009454	22193.0	Mm.1485	NM_009454	ENSMUSG00000027011	Ube2e3	Ubce4|ubcM2	ubiquitin-conjugating enzyme E2E 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-25579239-2	chr9	25579139	25579339	+	569.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 3 of 7)	intron (NM_026189, intron 3 of 7)	97642.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-76279682-3	chr14	76279584	76279784	+	903.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28222.0	NR_152108	72893.0	Mm.233565	NR_152108		2900040C04Rik	-	RIKEN cDNA 2900040C04 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-33319708-4	chr14	33319624	33319824	+	990.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153800, intron 4 of 10)	CpG	91300.0	NM_001310452	26419.0	Mm.21495	NM_016700	ENSMUSG00000021936	Mapk8	AI849689|JNK|JNK1|Prkm8|SAPK1	mitogen-activated protein kinase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-96658948-4	chr15	96658836	96659036	+	912.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16023.0	NM_001166458	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-103356020-1	chr12	103355920	103356120	+	568.0	f0_balb.idr	promoter-TSS (NM_023049)	promoter-TSS (NM_023049)	-19.0	NM_023049	65256.0	Mm.27159	NM_023049	ENSMUSG00000021200	Asb2	1110008E15Rik	ankyrin repeat and SOCS box-containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-44365245-2	chr19	44365145	44365345	+	733.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA6|LINE|L1	31919.0	NM_183216	329065.0	Mm.313583	NM_183216	ENSMUSG00000050195	Scd4	ACOD4	stearoyl-coenzyme A desaturase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-16141078-2	chr2	16140979	16141179	+	754.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310455, intron 33 of 38)	intron (NM_001310455, intron 33 of 38)	-215225.0	NM_026162	67448.0	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-96613905-2	chr10	96613805	96614005	+	862.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-3096.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129401524-2	chr2	129401424	129401624	+	963.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30385.0	NM_008361	16176.0	Mm.222830	NM_008361	ENSMUSG00000027398	Il1b	IL-1beta|Il-1b	interleukin 1 beta	protein-coding	1.98999752129392	1.38473815556624	1.60990737429101	2.8798537430575	2.13344098767395	2.64296498488641	2.65402192132098	2.89473042318055	1.04455634711738	0.254189731699376	0.751985668675266
Merged-chr16-97996065-8	chr16	97995968	97996168	+	930.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1247.0	NM_001362093	245305.0	Mm.148033	NM_001362093		B230307C23Rik	8030444G23Rik|EG245305	RIKEN cDNA B230307C23 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88424664-4	chr3	88424570	88424770	+	921.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001281795, intron 1 of 3)	intron (NM_001281795, intron 1 of 3)	471.0	NM_178696	229517.0	Mm.301740	NM_178696	ENSMUSG00000050144	Slc25a44	6720482A19|B430110G05Rik	solute carrier family 25, member 44	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-32760636-4	chr19	32760552	32760752	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008960, intron 1 of 8)	intron (NM_008960, intron 1 of 8)	3075.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-29346973-2	chr17	29346873	29347073	+	552.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347335, intron 1 of 11)	intron (NM_001347335, intron 1 of 11)	354.0	NM_001357762	56462.0	Mm.3224	NM_019880	ENSMUSG00000024012	Mtch1	2310034O17Rik|AI255158|AU018396|C77849|PSAP	mitochondrial carrier 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-117842079-3	chr5	117841968	117842168	+	826.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-24771.0	NM_008712	18125.0	Mm.44249	NM_008712	ENSMUSG00000029361	Nos1	2310005C01Rik|N-NOS|NC-NOS|NO|NOS|NOS-I|Nos-1|bNOS|nNOS	nitric oxide synthase 1, neuronal	protein-coding	-0.740010362248931	-0.878219495461772	-0.885747583835892	-0.888325961426182	-0.891976093305798	-0.875347529572599	-0.885011216337005	-0.126486538571356	2.28684166792884	0.445273407711896	1
Merged-chr1-173942530-4	chr1	173942450	173942650	+	994.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302651)	promoter-TSS (NM_001302651)	-58.0	NM_001302651	15950.0	Mm.463437	NM_008328	ENSMUSG00000039997	Ifi203	Ifi203a|Ifi203b|Mndal	interferon activated gene 203	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-45242634-3	chr19	45242585	45242785	+	786.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7449.0	NM_010691	16814.0	Mm.116815	NM_010691	ENSMUSG00000025216	Lbx1	Lbx1h	ladybird homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-24688576-2	chr5	24688476	24688676	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001305264, intron 1 of 14)	intron (NM_001305264, intron 1 of 14)	2761.0	NM_001305264	53312.0	Mm.5856	NM_016736	ENSMUSG00000028954	Nub1	4931404D21Rik|6330412F12Rik|BS4|NY-REN-18	negative regulator of ubiquitin-like proteins 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-94093081-3	chr8	94092982	94093182	+	948.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026116, intron 1 of 16)	intron (NM_026116, intron 1 of 16)	5729.0	NM_026116	67378.0	Mm.292107	NM_026116	ENSMUSG00000031755	Bbs2	2410125H22Rik|AI447581	Bardet-Biedl syndrome 2 (human)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-13864110-2	chr16	13864010	13864210	+	588.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039533, intron 8 of 22)	RMER15|LTR|ERVL	39035.0	NM_001039533	94184.0	Mm.171484	NM_053181	ENSMUSG00000022680	Pdxdc1	2210010A19Rik|AA415817|Kiaa0251-hp	pyridoxal-dependent decarboxylase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-137694156-2	chr6	137694049	137694249	+	654.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	-40933.0	NM_011499	20901.0	Mm.22584	NM_011499	ENSMUSG00000030224	Strap	AW557906|C78091|C79202|Unrip	serine/threonine kinase receptor associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-122242480-2	chr7	122242380	122242580	+	871.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22984.0	NM_027363	70261.0	Mm.96997	NM_027363	ENSMUSG00000030865	Chp2	2010110P09Rik|Cbhp2	calcineurin-like EF hand protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-98474840-2	chr7	98474740	98474940	+	749.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001130693, intron 18 of 18)	intron (NM_001130693, intron 18 of 18)	-19382.0	NM_001113379	434215.0	Mm.323057	NM_001113379	ENSMUSG00000090958	Lrrc32	AI426318|D11S833Eh|D7H11S833E|EG434215|Garp	leucine rich repeat containing 32	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-48799648-2	chr11	48799548	48799748	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008143)	promoter-TSS (NM_008143)	-712.0	NM_008143	14694.0	Mm.5305	NM_008143	ENSMUSG00000020372	Rack1	AL033335|GB-like|Gnb2-rs1|Gnb2l1|p205	receptor for activated C kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-74366119-2	chr1	74366019	74366219	+	649.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033345, intron 6 of 9)	B1_Mur4|SINE|Alu	4011.0	NM_001033345	241112.0	Mm.310460	NM_001033345	ENSMUSG00000073650	Catip	Gm216	ciliogenesis associated TTC17 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-39936703-4	chr1	39936598	39936798	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252202, intron 2 of 29)	intron (NM_001252202, intron 2 of 29)	35785.0	NM_008696	26921.0	Mm.491139	NM_008696	ENSMUSG00000026074	Map4k4	9430080K19Rik|AU043147|AU045934|AW046177|HGK|Nik	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123862827-3	chr5	123862726	123862926	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_030701)	TTS (NM_030701)	2690.0	NM_030701	80885.0	Mm.440567	NM_030701	ENSMUSG00000045502	Hcar2	Gpr109a|Gpr109b|HM74|Niacr1|PUMA-G|Pumag|mHM74b	hydroxycarboxylic acid receptor 2	protein-coding	2.25890669767879	1.65124425016809	0.999831805707084	1.20561412638844	2.21566723653797	1.94643654908661	1.24409591461688	1.21092441676419	0.273584750196836	0.818924978187164	0.998431161219273
Merged-chr4-44168321-4	chr4	44168215	44168415	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175201)	promoter-TSS (NM_175201)	-32.0	NM_001038993	73469.0	Mm.262859	NM_175201	ENSMUSG00000035696	Rnf38	1700065B19Rik|2610202O07Rik|AA673263|Oip1	ring finger protein 38	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96264008-3	chr3	96263928	96264128	+	860.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033596)	promoter-TSS (NM_033596)	-711.0	NM_033596	97122.0	Mm.227295	NM_033596	ENSMUSG00000091405	Hist2h4	H4|X04652	histone cluster 2, H4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122644393-4	chr5	122644330	122644530	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038845, intron 1 of 12)	intron (NM_001038845, intron 1 of 12)	519.0	NM_001038887	18439.0	Mm.42026	NM_011027	ENSMUSG00000029468	P2rx7	AI467586|P2X(7)|P2X7R	purinergic receptor P2X, ligand-gated ion channel, 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-44011595-4	chr10	44011488	44011688	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6742.0	NM_172393	11630.0	Mm.292082	NM_172393	ENSMUSG00000019866	Crybg1	AI462491|AI463325|Aim1	crystallin beta-gamma domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-12991310-1	chr7	12991210	12991410	+	587.0	f1_c57bl6.idr	exon (NM_009512, exon 5 of 10)	exon (NM_009512, exon 5 of 10)	6882.0	NM_009512	26459.0	Mm.10984	NM_009512	ENSMUSG00000030382	Slc27a5	FACVL3|FATP5|VLCS-H2|VLCSH2|Vlacsr	solute carrier family 27 (fatty acid transporter), member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-85341647-2	chr6	85341547	85341747	+	788.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001003955, exon 4 of 6)	exon (NM_001003955, exon 4 of 6)	-5274.0	NR_030486	735267.0		NR_030486	ENSMUSG00000076012	Mir705	Mirn705|mmu-mir-705	microRNA 705	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64957233-2	chr5	64957133	64957333	+	644.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359180, intron 1 of 1)	intron (NM_001359180, intron 1 of 1)	2863.0	NM_001359180	21899.0	Mm.42146	NM_011604	ENSMUSG00000051498	Tlr6	-	toll-like receptor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123076760-2	chr5	123076660	123076860	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039723, intron 1 of 11)	CpG	485.0	NM_001039723	330189.0	Mm.391872	NM_001039723	ENSMUSG00000054434	Tmem120b	-	transmembrane protein 120B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69848250-2	chr11	69848125	69848325	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_023564, exon 6 of 8)	exon (NM_023564, exon 6 of 8)	1581.0	NR_033133	70310.0	Mm.28874	NM_023564	ENSMUSG00000019461	Plscr3	2210403O21Rik|2610037N06Rik|ESTM3|X83310	phospholipid scramblase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-4917547-4	chr2	4917461	4917661	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1435.0	NM_010726	16922.0	Mm.391704	NM_010726	ENSMUSG00000026664	Phyh	AI256161|AI265699|Lnap1|PAHX	phytanoyl-CoA hydroxylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80812723-2	chr10	80812623	80812823	+	568.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028001, intron 1 of 6)	intron (NM_028001, intron 1 of 6)	775.0	NM_028001	71912.0	Mm.45137	NM_028001	ENSMUSG00000020216	Jsrp1	2300003C06Rik|2310032K21Rik|JP-45|JP45	junctional sarcoplasmic reticulum protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-56417661-4	chr9	56417556	56417756	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025812)	promoter-TSS (NM_025812)	394.0	NM_172924	244895.0	Mm.490331	NM_172924	ENSMUSG00000074305	Peak1	1110049L02Rik|9530046P14|AA690169|BE132841|C230081A13Rik|SGK269|mKIAA2002	pseudopodium-enriched atypical kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-46409143-3	chr18	46409046	46409246	+	942.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56670.0	NR_045438	72076.0	Mm.82766	NM_028086		Mospd4	2010013H21Rik	motile sperm domain containing 4	pseudo	3.37741897071606	2.80353691898216	2.7052710731723	3.59874102637061	2.5057567947652	2.24020433950935	1.73377996928251	1.67877061173918	-2.15225668231708	0.00598128759701622	0.0763631710873066
Merged-chr8-82372399-1	chr8	82372299	82372499	+	767.0	f1_balb.idr	intron (NM_008357, intron 2 of 7)	PB1D7|SINE|Alu	30187.0	NM_001254747	16168.0	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	-0.899922854013325	-0.887109844254568	-0.894192548302204	-0.896351257249948	-0.524096507499593	-0.884464025606667	-0.437305640795677	-0.895974523573804	2.97790224550765	0.327267979253912	1
Merged-chr9-108339207-4	chr9	108339116	108339316	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001329528, exon 1 of 3)	5' UTR (NM_001329528, exon 1 of 3)	136.0	NM_001329527	14775.0	Mm.1090	NM_008160	ENSMUSG00000063856	Gpx1	AI195024|AL033363|CGPx|GPx-1|GSHPx-1|Gpx	glutathione peroxidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-37140421-5	chr10	37140250	37140450	+	900.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1424.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-79168097-3	chr12	79167995	79168195	+	892.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016800, intron 1 of 5)	intron (NM_016800, intron 1 of 5)	4363.0	NM_016800	53612.0	Mm.265929	NM_016800	ENSMUSG00000021124	Vti1b	AU015348|GES30|MVti1b|SNARE|Vti1-rp1	vesicle transport through interaction with t-SNAREs 1B	protein-coding	2.08511554963706	1.35440212357029	2.13062735880293	1.74466816292753	2.84863363514449	1.86923670556227	2.71332315242692	2.99261254131273	1.85839723532016	0.0390951074470627	0.281738952397138
Merged-chr4-133843727-1	chr4	133843627	133843827	+	631.0	f1_balb.idr	Intergenic	RSINE1|SINE|B4	31004.0	NM_001285506	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	-0.320003593631931	0.183807077347408	-0.311116013372403	-0.150595947841083	-0.319179179563222	-0.305801599620477	-0.310159933624433	0.319301833793515	0.134759997264027	0.956551731145429	1
Merged-chr12-100205397-2	chr12	100205297	100205497	+	739.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001313934, intron 3 of 5)	intron (NM_001313934, intron 3 of 5)	5253.0	NM_001313934	12313.0	Mm.285993	NM_009790	ENSMUSG00000001175	Calm1	AI256814|AI327027|AI461935|AL024000|CaM|Calm|Cam1	calmodulin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-74312044-3	chr5	74311937	74312137	+	787.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114660, intron 5 of 8)	intron (NM_001114660, intron 5 of 8)	116711.0	NM_026878	68939.0	Mm.293316	NM_026878	ENSMUSG00000049907	Rasl11b	1190017B18Rik	RAS-like, family 11, member B	protein-coding	2.25558887135821	2.10354093751931	1.36266190866303	2.12623066933235	3.08877710824443	3.20151077573688	2.2076496630969	2.27347873149121	1.66090989725358	0.0551262327671874	0.345104624927801
Merged-chr15-57773025-2	chr15	57772925	57773125	+	743.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_199449, intron 2 of 3)	Tigger9b|DNA|TcMar-Tigger	78358.0	NM_199449	387609.0	Mm.36557	NM_199449	ENSMUSG00000071757	Zhx2	Afr-1|Afr1|Raf|mKIAA0854	zinc fingers and homeoboxes 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-8744731-4	chr13	8744641	8744841	+	773.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110345, intron 8 of 10)	intron (NR_110345, intron 8 of 10)	126303.0	NM_001039389	207615.0	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-119713267-4	chr13	119713170	119713370	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175538, intron 3 of 3)	intron (NM_175538, intron 3 of 3)	22919.0	NM_001291439	208715.0	Mm.61526	NM_145942	ENSMUSG00000093930	Hmgcs1	B130032C06Rik	3-hydroxy-3-methylglutaryl-Coenzyme A synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-20915269-4	chr11	20915150	20915350	+	927.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-84142.0	NM_173752	216551.0	Mm.76694	NM_173752	ENSMUSG00000042363	Lgalsl	1110067D22Rik|A530071M23|Grpa|Hspc159|Lgalsla	lectin, galactoside binding-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-43332510-3	chr17	43332417	43332617	+	870.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27914.0	NM_001357332	224792.0	Mm.23478	NM_001081178	ENSMUSG00000056492	Adgrf5	8430401C09Rik|9330185D23|AI528491|Gpr116|mKIAA0758	adhesion G protein-coupled receptor F5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-119064251-2	chr10	119064151	119064351	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-13752.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-67607896-4	chr5	67607757	67607957	+	921.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033415)	promoter-TSS (NM_001033415)	-26.0	NM_001033415	330096.0	Mm.442747	NM_001033415	ENSMUSG00000050010	Shisa3	D830007B15Rik	shisa family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-5990087-4	chr18	5989999	5990199	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	145999.0	NM_029277	75415.0	Mm.239675	NM_029277	ENSMUSG00000041225	Arhgap12	2810011M08Rik	Rho GTPase activating protein 12	protein-coding	6.19726491946462	5.82664289357491	6.34815196700781	6.40756076785703	6.12196827249056	6.66531007453231	6.43504164377654	6.6433092552028	0.282802053341598	0.202724765815513	0.688808411556785
Merged-chr13-73996675-3	chr13	73996581	73996781	+	704.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-12738.0	NM_182839	72948.0	Mm.39752	NM_182839	ENSMUSG00000021573	Tppp	2900041A09Rik|AI849835	tubulin polymerization promoting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-145025336-1	chr4	145025236	145025436	+	750.0	f0_balb.idr	intron (NM_001276465, intron 65 of 69)	intron (NM_001276465, intron 65 of 69)	132199.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-73892819-4	chr2	73892690	73892890	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001284376)	promoter-TSS (NM_001284376)	-151.0	NM_001284370	11909.0	Mm.209903	NM_009715	ENSMUSG00000027104	Atf2	Atf-2|CRE-BP|Creb2|D130078H02Rik|D18875|Tg(Gzma-Klra1)7Wum|mXBP	activating transcription factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99183964-4	chr7	99183888	99184088	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1275.0	NM_026384	67800.0	Mm.180189	NM_026384	ENSMUSG00000030747	Dgat2	0610010B06Rik|ARAT|DGAT-2	diacylglycerol O-acyltransferase 2	protein-coding	3.78561938080477	3.02864133302648	4.14851470270541	4.24397581722226	3.87226543687481	3.91138257851003	4.56487160747866	3.31993083801291	0.146420131745017	0.775528597066406	0.998431161219273
Merged-chr4-132333830-2	chr4	132333730	132333930	+	561.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133878, intron 9 of 9)	PB1D9|SINE|Alu	-4292.0	NM_027925	71787.0	Mm.239183	NM_027925	ENSMUSG00000028898	Trnau1ap	1110007F05Rik|AA387999|Secp43|Trspap1|WI1-2643G14.2	tRNA selenocysteine 1 associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100862733-4	chr7	100862634	100862834	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177073, intron 1 of 10)	intron (NM_177073, intron 1 of 10)	679.0	NM_001358914	320100.0	Mm.40336	NM_177073	ENSMUSG00000008318	Relt	E430021K24Rik|Tnfrsf19l	RELT tumor necrosis factor receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-53610388-4	chr9	53610285	53610485	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144784)	promoter-TSS (NM_144784)	-35.0	NM_144784	110446.0	Mm.293233	NM_144784	ENSMUSG00000032047	Acat1	6330585C21Rik|Acat	acetyl-Coenzyme A acetyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-154906322-3	chr4	154906218	154906418	+	889.388855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16_Mm|LTR|ERVK	-7275.0	NM_025582	66469.0	Mm.41868	NM_025582	ENSMUSG00000029059	Fam213b	2810405K02Rik|AI836168|PM/PGFS	family with sequence similarity 213, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-80706835-3	chr15	80706735	80706935	+	713.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4478.0	NM_144812	213988.0	Mm.131328	NM_144812	ENSMUSG00000047888	Tnrc6b	2700090M07Rik|A730065C02Rik|AI848765|D230019K20Rik	trinucleotide repeat containing 6b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-8870567-4	chr10	8870474	8870674	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 1 of 19)	intron (NM_175155, intron 1 of 19)	15496.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-46645754-2	chr17	46645662	46645862	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_001316742)	promoter-TSS (NM_001316742)	318.0	NM_001357130	74764.0	Mm.279599	NM_029091	ENSMUSG00000003546	Klc4	1200014P03Rik|AA408085|AW146303|Knsl8	kinesin light chain 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-54304075-2	chr11	54303975	54304175	+	982.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144823)	promoter-TSS (NM_144823)	-129.0	NM_144823	216739.0	Mm.267478	NM_144823	ENSMUSG00000020333	Acsl6	A330035H04Rik|AW050338|Facl6|LACS|Lacsl|mKIAA0837	acyl-CoA synthetase long-chain family member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-25663519-1	chr2	25663419	25663619	+	842.6666869999999	f0_balb.idr	Intergenic	Intergenic	5567.0	NM_001042630	13863.0	Mm.12867	NM_007947	ENSMUSG00000026937	Lcn5	E-RABP|Erabp|MEP10	lipocalin 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-75529593-4	chr12	75529492	75529692	+	908.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012024, intron 2 of 13)	intron (NM_012024, intron 2 of 13)	66608.0	NM_012024	26932.0	Mm.259626	NM_012024	ENSMUSG00000021051	Ppp2r5e	4633401M22Rik|AI449017|B56beta	protein phosphatase 2, regulatory subunit B', epsilon	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-25210942-2	chr2	25210842	25211042	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001310157, exon 1 of 12)	5' UTR (NM_001310157, exon 1 of 12)	547.0	NM_021393	58202.0	Mm.116418	NM_021393	ENSMUSG00000013465	Nelfb	A730008L03Rik|AB041607|AI663983|Cobra1|Nelf-b	negative elongation factor complex member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141803475-2	chr4	141803375	141803575	+	676.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001277932, intron 2 of 7)	intron (NM_001277932, intron 2 of 7)	9863.0	NM_001277932	12371.0	Mm.88829	NM_015733	ENSMUSG00000028914	Casp9	AI115399|APAF-3|AW493809|CASP-9|Caspase-9|ICE-LAP6|Mch6	caspase 9	protein-coding	0.202258172083269	-0.311493532718427	-0.315264419707308	-0.318160841904921	0.0356507000202341	-0.31064091113456	-0.002437943390762	-0.317655655918767	0.194635487840394	0.938129198197077	1
Merged-chr7-4292825-1	chr7	4292725	4292925	+	1000.0	f1_balb.idr	Intergenic	RMER16A3|LTR|ERVK	18636.0	NM_008848	18729.0	Mm.326531	NM_008848		Pira6	12M1|Pira10|p91B	paired-Ig-like receptor A6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-55098533-1	chr4	55098433	55098633	+	599.5	f0_balb.idr	Intergenic	Intergenic	150588.0	NM_172867	242466.0	Mm.102904	NM_172867	ENSMUSG00000060206	Zfp462	6030417H05|9430078C22Rik|Gt4-2|Zfpip	zinc finger protein 462	protein-coding	-0.856514354776245	-0.845370394978735	-0.850514310852045	-0.852773909475587	-0.292223953931639	-0.84264962171977	-0.849867491140278	-0.547401415615712	3.06460262907648	0.306617968354668	1
Merged-chr19-59460839-1	chr19	59460739	59460939	+	544.0	f1_balb.idr	intron (NM_010132, intron 1 of 2)	intron (NM_010132, intron 1 of 2)	2149.0	NM_010132	13797.0	Mm.245394	NM_010132	ENSMUSG00000043969	Emx2	Pdo	empty spiracles homeobox 2	protein-coding	-0.838354004625293	-0.829045532231904	-0.83287544315711	-0.834942405164556	-0.476445790202573	-0.642105685927108	-0.832282936247967	-0.543041131766859	2.95820913597882	0.290259887020484	1
Merged-chr11-119875067-4	chr11	119874982	119875182	+	995.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028898, intron 24 of 33)	intron (NM_028898, intron 24 of 33)	-7207.0	NR_039557	100628577.0		NR_039557	ENSMUSG00000093061	Mir5098	mmu-mir-5098|mu-mir-5098	microRNA 5098	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43470496-4	chr4	43470382	43470582	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	13227.0	NM_019436	54390.0	Mm.31775	NM_019436	ENSMUSG00000028460	Sit1	Sit	suppression inducing transmembrane adaptor 1	protein-coding	1.60577595944505	1.44273761167657	1.26009612024681	0.736722405016313	1.16309147090929	0.761685594969569	0.749216823194556	1.45563892751518	-0.93666526025514	0.523838521024002	0.948197779519432
Merged-chr15-76349391-2	chr15	76349291	76349491	+	686.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025340, intron 2 of 8)	URR1B|DNA|hAT-Charlie	1719.0	NM_025340	106025.0	Mm.41463	NM_025340	ENSMUSG00000022552	Sharpin	0610041B22Rik|AW121341|RBCKL1|SIPL1|cpdm	SHANK-associated RH domain interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-29351125-2	chr6	29351025	29351225	+	599.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285412, intron 1 of 6)	intron (NM_001285412, intron 1 of 6)	3019.0	NM_007594	12321.0	Mm.392075	NM_007594	ENSMUSG00000029767	Calu	9530075H20Rik	calumenin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-156620229-4	chr1	156620154	156620354	+	914.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001136104, intron 1 of 12)	intron (NM_001136104, intron 1 of 12)	54085.0	NM_023141	30935.0	Mm.206737	NM_023141	ENSMUSG00000060519	Tor3a	Adir	torsin family 3, member A	protein-coding	0.476933936450388	0.511473071145147	0.708732745961186	1.40553860618213	1.23686998991492	0.513957531939114	0.502815859482675	1.41575448470326	0.608550432995949	0.724817965258755	0.998431161219273
Merged-chr11-110941734-4	chr11	110941639	110941839	+	724.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26294.0	NM_010604	16517.0	Mm.30176	NM_010604	ENSMUSG00000051497	Kcnj16	6430410F18Rik|AI132396|Kir5.1	potassium inwardly-rectifying channel, subfamily J, member 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-87237061-2	chr12	87236961	87237161	+	926.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_027744, intron 2 of 7)	intron (NM_027744, intron 2 of 7)	1540.0	NM_027744	71275.0	Mm.79198	NM_027744	ENSMUSG00000072919	Noxred1	4933437F05Rik	NADP+ dependent oxidoreductase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96487994-6	chr3	96487907	96488107	+	776.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B2|LTR|ERVK	-35701.0	NM_001256181	329716.0	Mm.275223	NM_183223	ENSMUSG00000046317	BC107364	D730018G16	cDNA sequence BC107364	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-75797844-4	chr10	75797771	75797971	+	792.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358778)	promoter-TSS (NM_001358778)	-140.0	NM_001358778	14871.0	Mm.2746	NM_008185	ENSMUSG00000001663	Gstt1	AI255817|Gstt1-1	glutathione S-transferase, theta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-18591254-1	chr19	18591154	18591354	+	1000.0	f0_balb.idr	intron (NM_017375, intron 5 of 9)	MER20|DNA|hAT-Charlie	40559.0	NM_017375	20409.0	Mm.172222	NM_017375	ENSMUSG00000024725	Ostf1	C78236|SH3P2|Sh3d3	osteoclast stimulating factor 1	protein-coding	0.371596055808784	0.406073682908396	0.105857557018253	-0.0616605139628445	0.288744437734885	-0.0528462907378882	-0.0572930461631431	-0.0610684792212327	-1.5870966379415	0.470753380266001	1
Merged-chr6-108214328-2	chr6	108214228	108214428	+	685.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 2 of 61)	intron (NM_010585, intron 2 of 61)	1232.0	NM_010585	16438.0	Mm.227912	NM_010585	ENSMUSG00000030102	Itpr1	D6Pas2|Gm10429|IP3R 1|IP3R1|InsP3R|Ip3r|Itpr-1|P400|Pcp-1|Pcp1|insP3R1|opt|wblo	inositol 1,4,5-trisphosphate receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-84149218-3	chr1	84149137	84149337	+	774.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003948, intron 2 of 2)	intron (NM_001003948, intron 2 of 2)	69724.0	NR_105771	102465181.0		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-95826999-2	chr15	95826899	95827099	+	965.166626	f1_balb.idr|f1_c57bl6.idr	intron (NR_155276, intron 1 of 1)	intron (NR_155276, intron 1 of 1)	3073.0	NR_155277	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16297808-2	chr7	16297771	16297971	+	600.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11076.0	NM_001136471	243846.0	Mm.482401	NM_172297	ENSMUSG00000041375	Ccdc9	2600011L02Rik	coiled-coil domain containing 9	protein-coding	0.590918710577305	0.197986358177349	0.190161161104023	0.184075095635949	0.175398138164853	1.19356760813877	0.392328574656888	0.65994778207032	2.28599390284277	0.242447716559547	1
Merged-chr6-11921114-2	chr6	11921014	11921214	+	777.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001362123, intron 1 of 15)	MLT1C|LTR|ERVL-MaLR	-4767.0	NM_001362122	75725.0	Mm.212411	NM_029404	ENSMUSG00000029629	Phf14	1110001C23Rik|4932409F11Rik|5730446A07Rik|AA623952|AV297001|mKIAA0783	PHD finger protein 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-94233801-3	chr2	94233710	94233910	+	682.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7568.0	NR_106139	102465777.0		NR_106139	ENSMUSG00000106336	Mir129b	mmu-mir-129b	microRNA 129b	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-104039954-4	chr9	104039872	104040072	+	965.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028721, intron 24 of 26)	AT_rich|Low_complexity|Low_complexity	23149.0	NM_025692	66663.0	Mm.224935	NM_025692	ENSMUSG00000032557	Uba5	5730525G14Rik|AW240750|Ube1dc1	ubiquitin-like modifier activating enzyme 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-44588583-2	chr10	44588483	44588683	+	995.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-129835.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-132791410-1	chr1	132791310	132791510	+	594.0	f0_balb.idr	Intergenic	Lx3C|LINE|L1	-49613.0	NM_001160317	269116.0	Mm.326702	NM_182716	ENSMUSG00000026442	Nfasc	AA387016|D430023G06Rik|NF|mKIAA0756	neurofascin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-33731826-4	chr8	33731702	33731902	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001167921)	promoter-TSS (NM_001167921)	-112.0	NM_001167921	68153.0	Mm.286104	NM_026584	ENSMUSG00000031585	Gtf2e2	34kDa|AI462509|C330006J08Rik	general transcription factor II E, polypeptide 2 (beta subunit)	protein-coding	6.09970744803466	6.18607823537825	6.28348615044625	6.76121199156599	6.12427059387925	6.26414095411853	7.17436011255532	6.0613651374929	0.134966474688497	0.615132313887328	0.977344463026735
Merged-chr5-125384666-4	chr5	125384572	125384772	+	859.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5345.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-82697551-4	chr10	82697440	82697640	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1467.0	NM_001081218	67933.0	Mm.127405	NM_026462	ENSMUSG00000020246	Hcfc2	1700129L13Rik|AU019838|fkls	host cell factor C2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-70314214-7	chr16	70314145	70314345	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_028803, exon 1 of 16)	exon (NM_028803, exon 1 of 16)	296.0	NM_028803	74185.0	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-74942746-2	chr5	74942646	74942846	+	821.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6448.0	NR_045866	619945.0	Mm.359372	NM_001037908	ENSMUSG00000072874	Gm6116	EG619945	predicted gene 6116	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-12513201-1	chr19	12513101	12513301	+	694.666687	f0_balb.idr	Intergenic	L1MD|LINE|L1	-11205.0	NM_172442	207521.0	Mm.247695	NM_172442	ENSMUSG00000039982	Dtx4	AI449438|BC044798|D930042H13|RNF155	deltex 4, E3 ubiquitin ligase	protein-coding	-1.21575676353841	-1.1882771616738	-1.1995328574972	-1.2087786211754	-1.21524488394202	-1.18583800543462	-1.19698481468061	-0.540595393272118	2.74438217975722	0.425994238664144	1
Merged-chr7-45568302-4	chr7	45568194	45568394	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_025330)	TTS (NM_025330)	-1859.0	NM_009737	12036.0	Mm.24210	NM_009737	ENSMUSG00000030826	Bcat2	Bcat(m)|Bcat-2|Eca40	branched chain aminotransferase 2, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-3647574-2	chr8	3647473	3647673	+	637.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6D|LTR|ERVK	-8197.0	NM_001204959	57264.0	Mm.1181	NM_022984	ENSMUSG00000012705	Retn	ADSF|Fizz3|Rstn|Xcp4	resistin	protein-coding	0.184904688131445	0.866848602042863	0.200547687410322	0.19469179823722	0.186365914489032	0.878594059590564	0.933288623545985	0.195716918418648	1.15038494863881	0.577950038219044	1
Merged-chr7-29126714-4	chr7	29126620	29126820	+	955.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1569.0	NM_009109	20190.0	Mm.439745	NM_009109	ENSMUSG00000030592	Ryr1	AI528790|RYR-1|Ryr|skrr	ryanodine receptor 1, skeletal muscle	protein-coding	2.76949394474966	2.62076977420878	2.12011215045782	2.66615279390655	2.11747639767847	3.19697672136113	2.42998350570071	1.89951403789846	-0.113071008553816	0.888677733996213	0.998431161219273
Merged-chr19-9060280-3	chr19	9060193	9060393	+	849.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286518, intron 6 of 6)	intron (NM_001286518, intron 6 of 6)	27663.0	NM_011681	22287.0	Mm.2258	NM_011681	ENSMUSG00000024653	Scgb1a1	CC10|CC16|CCSP|PCB-BP|UG|UGB|Utg	secretoglobin, family 1A, member 1 (uteroglobin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-74970587-4	chr15	74970492	74970692	+	891.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12838.0	NM_001358005	57248.0	Mm.358339	NM_020498	ENSMUSG00000022586	Ly6i	AI789751|Ly-6I|Ly-6M	lymphocyte antigen 6 complex, locus I	protein-coding	2.7897893521363	2.23581392849455	2.80337873332987	3.83693602168791	3.15546205712031	3.44891999978516	2.54202100260111	3.70067765943372	0.351177808878057	0.607904787733541	0.974576632476413
Merged-chr2-173017387-2	chr2	173017287	173017487	+	661.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4515.0	NM_019547	56190.0	Mm.485782	NM_019547	ENSMUSG00000027510	Rbm38	Rnpc1|Seb4|Seb4l	RNA binding motif protein 38	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-93488636-4	chr10	93488539	93488739	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010401)	promoter-TSS (NM_010401)	-129.0	NM_010401	15109.0	Mm.13000	NM_010401	ENSMUSG00000020017	Hal	Hsd|his|histidase	histidine ammonia lyase	protein-coding	5.21718316150404	5.19171597887522	5.62547638317766	5.08766471847914	6.60310926887576	6.56452783332022	6.39819522934844	6.59381255161709	1.37803592405389	3.64921431414571e-09	5.00985466403425e-07
Merged-chr5-107988813-1	chr5	107988713	107988913	+	542.0	f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-1736.0	NM_026062	67266.0	Mm.277897	NM_026062	ENSMUSG00000029270	Fam69a	2900024C23Rik|AI315274	family with sequence similarity 69, member A	protein-coding	-1.50811478453619	-0.99851579554048	-1.48484165847197	-1.49312904261012	-1.50577282675516	-1.47256636097272	-1.48255773576353	-1.49164560481169	-2.24133836997777	0.518237887813808	1
Merged-chr19-44379151-2	chr19	44379051	44379251	+	674.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28558.0	NM_009127	20249.0	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180195327-3	chr1	180195244	180195444	+	774.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023341, intron 1 of 14)	intron (NM_023341, intron 1 of 14)	676.0	NM_023341	67426.0	Mm.38330	NM_023341	ENSMUSG00000026489	Coq8a	4632432J16Rik|AI462003|Adck3|Cabc1|mKIAA0451	coenzyme Q8A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-35176254-2	chr7	35176154	35176354	+	654.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10131.0	NM_017394	53896.0	Mm.35567	NM_017394	ENSMUSG00000030495	Slc7a10	AL024237|Asc-1|D7Bwg0847e	solute carrier family 7 (cationic amino acid transporter, y+ system), member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-31015126-2	chr17	31015026	31015226	+	878.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42568.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-97826477-2	chr15	97826377	97826577	+	632.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001204280, intron 1 of 21)	intron (NM_001204280, intron 1 of 21)	5290.0	NM_019572	56233.0	Mm.384027	NM_019572	ENSMUSG00000022475	Hdac7	5830434K02Rik|HD7|HD7a|Hdac7a|mFLJ00062	histone deacetylase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127326873-2	chr10	127326773	127326973	+	542.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001285785, exon 9 of 16)	exon (NM_001285785, exon 9 of 16)	1231.0	NM_001359657	216445.0	Mm.227198	NM_146011	ENSMUSG00000040345	Arhgap9	AU043488	Rho GTPase activating protein 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-45817150-1	chr8	45817050	45817250	+	549.0	f1_c57bl6.idr	intron (NM_001205219, intron 21 of 23)	intron (NM_001205219, intron 21 of 23)	2147.0	NR_045739	319940.0	Mm.441720	NR_045739	ENSMUSG00000085440	Sorbs2os	D330022K07Rik	sorbin and SH3 domain containing 2, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-48745175-4	chr9	48745083	48745283	+	927.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033324, intron 2 of 6)	intron (NM_001033324, intron 2 of 6)	90762.0	NM_001033324	235320.0	Mm.457803	NM_001033324	ENSMUSG00000066687	Zbtb16	AI467657|PLZF|Zfp145|lu	zinc finger and BTB domain containing 16	protein-coding	4.51286340966404	5.03625610134257	5.43979949341469	4.14919728134268	2.16334141671079	3.7520982021454	1.93710487790212	1.54912575616205	-3.11986286055007	0.00248453167599584	0.0395350279159126
Merged-chr3-159840996-3	chr3	159840871	159841071	+	691.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356350, intron 1 of 12)	intron (NM_001356350, intron 1 of 12)	1321.0	NM_001356350	68151.0	Mm.6766	NM_026582	ENSMUSG00000028173	Wls	5031439A09Rik|AI173978|AI987742|EVI|Gpr177	wntless WNT ligand secretion mediator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152815327-2	chr1	152815227	152815427	+	607.233337	f1_balb.idr|f1_c57bl6.idr	intron (NM_010877, intron 3 of 15)	intron (NM_010877, intron 3 of 15)	15174.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-180025440-3	chr2	180025323	180025523	+	857.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177727, intron 1 of 8)	CpG	436.0	NM_177727	241846.0	Mm.21577	NM_177727	ENSMUSG00000039108	Lsm14b	9430078B04|BC040823	LSM family member 14B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-102700937-4	chr2	102700829	102701029	+	981.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077514, intron 1 of 10)	intron (NM_001077514, intron 1 of 10)	-5509.0	NM_011393	20511.0	Mm.267547	NM_011393	ENSMUSG00000005089	Slc1a2	1700091C19Rik|2900019G14Rik|AI159670|Eaat2|GLT-1|GLT1|MGLT1	solute carrier family 1 (glial high affinity glutamate transporter), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-68499156-3	chr18	68499028	68499228	+	898.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69808.0	NM_001301372	17200.0	Mm.426053	NM_008560	ENSMUSG00000045569	Mc2r	ACTH-R|ACTHR|MC2-R	melanocortin 2 receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69922465-2	chr11	69922365	69922565	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166593)	promoter-TSS (NM_001166593)	-507.0	NM_001166593	276770.0	Mm.18026	NM_181582	ENSMUSG00000078812	Eif5a	AA410058|D19Wsu54e|Eif4d|Eif5a1|eIF-4D|eIF-5A|eIF-5A-1|eIF-5A1	eukaryotic translation initiation factor 5A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-53259215-3	chr19	53258957	53259157	+	895.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3852.0	NR_036590	69319.0	Mm.57452	NR_036590		1700001K23Rik	-	RIKEN cDNA 1700001K23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6979228-1	chr19	6979128	6979328	+	586.0	f0_balb.idr	intron (NM_008020, intron 1 of 5)	intron (NM_008020, intron 1 of 5)	164.0	NM_001360288	14227.0	Mm.4234	NM_008020	ENSMUSG00000056629	Fkbp2	mFKBP13|mFKBP2	FK506 binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-66918808-4	chr9	66918698	66918898	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	907.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-103345745-4	chr9	103345655	103345855	+	946.966675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_176979, exon 25 of 28)	exon (NM_176979, exon 25 of 28)	19224.0	NM_001134427	321022.0	Mm.261025	NM_175565	ENSMUSG00000032803	Cdv3	2510010F10Rik|C230084J24Rik|C79446|TPP36	carnitine deficiency-associated gene expressed in ventricle 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-55623580-4	chr4	55623479	55623679	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-91104.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	4.79895533864285	4.35855467484313	4.94055461008692	4.33173548408921	4.9813775882353	4.57233726406127	5.01108445490364	4.11925339906327	0.103160061126166	0.785765491447006	0.998431161219273
Merged-chr16-49876315-4	chr16	49876207	49876407	+	989.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010581, intron 3 of 9)	intron (NM_010581, intron 3 of 9)	20653.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-123950321-3	chr8	123950243	123950443	+	872.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1078.0	NM_172288	234865.0	Mm.267812	NM_172288	ENSMUSG00000039509	Nup133	mermaid	nucleoporin 133	protein-coding	3.51200319696385	3.48959844892729	2.59494176259705	3.56866622443328	3.53949521807831	3.23095254911198	2.76411648962871	3.12585569116056	-0.246634609959378	0.682477693312032	0.995882295196263
Merged-chr15-53556625-2	chr15	53556538	53556738	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_177225, intron 4 of 4)	intron (NM_177225, intron 4 of 4)	57641.0	NR_039538	100628567.0		NR_039538	ENSMUSG00000104794	Mir28c	mmu-mir-28c	microRNA 28c	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-174480843-1	chr2	174480743	174480943	+	630.0	f1_balb.idr	Intergenic	MT2A|LTR|ERVL	-7902.0	NM_025531	66390.0	Mm.182294	NM_025531	ENSMUSG00000016257	Prelid3b	2310042G06Rik|AA407013|Slmo2	PRELI domain containing 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85257445-4	chr12	85257365	85257565	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175337, intron 5 of 11)	intron (NM_175337, intron 5 of 11)	-11480.0	NR_105903	102466769.0		NR_105903	ENSMUSG00000098263	Mir6938	Gm27519|mmu-mir-6938	microRNA 6938	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-132813811-4	chr7	132813677	132813877	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_212473)	promoter-TSS (NM_212473)	-581.0	NM_212473	77938.0	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-43842027-4	chr10	43841918	43842118	+	920.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	16111.0	NR_131055	71018.0	Mm.410796	NR_131055	ENSMUSG00000111342	4933404K13Rik	-	RIKEN cDNA 4933404K13 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-68689558-2	chr11	68689458	68689658	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2357.0	NM_175260	77579.0	Mm.218233	NM_175260	ENSMUSG00000020900	Myh10	5730504C04Rik|9330167F11Rik|Fltn|Myhn-2|Myhn2|NMHC II-B|NMHC-B|NMHCII-B|NMMHC II-b|NMMHC-B|NMMHC-IIB|SMemb|mKIAA3005	myosin, heavy polypeptide 10, non-muscle	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97021514-1	chr11	97021414	97021614	+	543.0	f1_c57bl6.idr	non-coding (NR_133649, exon 1 of 2)	non-coding (NR_133649, exon 1 of 2)	4904.0	NR_133649	100127433.0	Mm.156282	NR_133649	ENSMUSG00000087067	Gm11532	Sp6os	predicted gene 11532	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-101910839-2	chr13	101910739	101910939	+	649.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-142622.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-98020813-1	chr5	98020713	98020913	+	555.0	f1_balb.idr	intron (NM_133738, intron 3 of 16)	intron (NM_133738, intron 3 of 16)	10149.0	NM_133738	71914.0	Mm.24842	NM_133738	ENSMUSG00000029338	Antxr2	2310046B19Rik|AW561899|CMG-2|CMG2|cI-35	anthrax toxin receptor 2	protein-coding	-0.417717480266155	-0.40341669512124	-0.408085651308692	0.0384860430193272	-0.416820421328459	-0.402366363650667	-0.407054548302204	0.434303290543806	1.24445282124957	0.64090262545724	1
Merged-chr11-106793238-2	chr11	106793138	106793338	+	850.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166685, intron 3 of 18)	intron (NM_001166685, intron 3 of 18)	3986.0	NM_001166685	320162.0	Mm.30524	NM_177088	ENSMUSG00000018372	Cep95	4732496G21Rik|AI118346|AI448335|Ccdc45|D330027A14Rik|F630025I20Rik	centrosomal protein 95	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-9135652-4	chr19	9135550	9135750	+	988.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025610)	promoter-TSS (NM_025610)	-84.0	NM_025610	66514.0	Mm.272847	NM_025610	ENSMUSG00000024654	Asrgl1	2410004D18Rik|ALP|ALP1|AU040643|AW060375	asparaginase like 1	protein-coding	4.54908521187713	4.63810423818343	3.75065202816797	4.94543751464862	4.75836726772549	4.61630540084629	4.57646054199394	4.82792092203694	0.20084557996293	0.599083133600807	0.972303230574462
Merged-chr8-72297166-4	chr8	72297075	72297275	+	961.2708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21887.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	1.2017083828504	0.387399256898435	0.378915255111738	0.831289627527747	0.362929468898341	1.05362080296312	0.738845460273236	0.373476945470528	-0.438651578193335	0.810738594710551	1
Merged-chr8-91070730-4	chr8	91070615	91070815	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011250, intron 1 of 21)	intron (NM_011250, intron 1 of 21)	658.0	NM_001282000	19651.0	Mm.235580	NM_011250	ENSMUSG00000031666	Rbl2	PRB2|RBR-2|Rb2|p130	RB transcriptional corepressor like 2	protein-coding	5.23568988208038	4.78454862381601	5.11817756432301	3.91497565741951	4.98737449397403	5.00007105272064	5.08346840029436	4.38114710768517	0.0400107105271181	0.916145990533824	0.998431161219273
Merged-chr1-85844211-2	chr1	85844111	85844311	+	819.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355046, intron 6 of 9)	L2a|LINE|L2	50194.0	NM_001355047	12283.0	Mm.26135	NM_133781	ENSMUSG00000036707	Cab39	AA408805|AA960512|C78372|MO25|MO25alpha	calcium binding protein 39	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135366547-1	chr5	135366447	135366647	+	549.0	f1_balb.idr	exon (NM_001346745, exon 5 of 6)	exon (NM_001346745, exon 5 of 6)	-3406.0	NM_001359617	100609.0	Mm.281189	NM_145414	ENSMUSG00000000916	Nsun5	9830109N13Rik|AI326939|Nol1r|Wbscr20|Wbscr20a	NOL1/NOP2/Sun domain family, member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-85185330-4	chr10	85185140	85185340	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007771)	promoter-TSS (NM_007771)	-186.0	NM_007771	12952.0	Mm.26237	NM_007771	ENSMUSG00000020038	Cry1	AU020726|AU021000|Phll1	cryptochrome 1 (photolyase-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-55630447-3	chr4	55630342	55630542	+	922.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-97967.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	3.59744785656706	3.88269412960305	2.52000259042395	3.50183825827191	3.26721478581588	3.8348806944479	3.85455091669429	4.51251535570509	0.696378596908262	0.210961947544582	0.700323931057359
Merged-chr14-122645193-2	chr14	122645093	122645293	+	999.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NR_153443, intron 8 of 24)	RLTR51A_Mm|LTR|ERVK?	110865.0	NM_144844	110821.0	Mm.23876	NM_144844	ENSMUSG00000041650	Pcca	C79630	propionyl-Coenzyme A carboxylase, alpha polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25073629-2	chr7	25073529	25073729	+	550.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1260.0	NM_001360067	14809.0	Mm.2879	NM_008168	ENSMUSG00000003378	Grik5	GluK5|GluRgamma2|KA2	glutamate receptor, ionotropic, kainate 5 (gamma 2)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-153498290-2	chr1	153498190	153498390	+	703.083374	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-10630.0	NM_007842	13211.0	Mm.20000	NM_007842	ENSMUSG00000042699	Dhx9	AI326842|Ddx9|HEL-5|NDHII|RHA|mHEL-5	DEAH (Asp-Glu-Ala-His) box polypeptide 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-13645127-4	chr8	13645018	13645218	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 1 of 23)	L1MB8|LINE|L1	32469.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-4099018-3	chr7	4098929	4099129	+	908.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033568, intron 5 of 8)	ORR1B1|LTR|ERVL-MaLR	-20501.0	NM_001109765	57776.0	Mm.29729	NM_021324	ENSMUSG00000030428	Ttyh1	4930459B04Rik|6330408P11Rik|TTY1|mTTY1|tty	tweety family member 1	protein-coding	3.79926162905871	3.70612675328403	3.16678942863871	3.73521864636642	2.16730583238874	1.7053848194228	2.97462941022023	3.91277261380015	-1.00745788175088	0.156215930152902	0.612065034199469
Merged-chr5-137791797-2	chr5	137791697	137791897	+	768.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001005426, intron 1 of 16)	B2_Mm2|SINE|B2	3995.0	NM_001005426	381678.0	Mm.332765	NM_001005426	ENSMUSG00000037108	Zcwpw1	Gm1053	zinc finger, CW type with PWWP domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-81616624-4	chr17	81616522	81616722	+	914.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 2 of 8)	intron (NR_104580, intron 2 of 8)	121765.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-67728216-1	chr13	67728116	67728316	+	562.0	f0_c57.idr	intron (NM_145622, intron 1 of 3)	intron (NM_145622, intron 1 of 3)	957.0	NM_145622	235907.0	Mm.440123	NM_145622	ENSMUSG00000071281	Zfp65	KRAB5|Zfp71-rs1|pz114	zinc finger protein 65	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-64064991-3	chr7	64064872	64065072	+	959.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1G3|LTR|ERVL-MaLR	-88863.0	NM_001039104	17364.0	Mm.38875	NM_018752	ENSMUSG00000030523	Trpm1	4732499L03Rik|AI606771|Ltrpc1|Mlsn1	transient receptor potential cation channel, subfamily M, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-22010108-4	chr3	22010011	22010211	+	937.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66541.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-22811639-4	chr2	22811526	22811726	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019456, intron 1 of 13)	intron (NM_019456, intron 1 of 13)	37299.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-43675143-2	chr7	43675043	43675243	+	918.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_145582, exon 2 of 3)	exon (NM_145582, exon 2 of 3)	3112.0	NM_145582	233189.0	Mm.26514	NM_145582	ENSMUSG00000038888	Ctu1	Atpbd3|BC005752	cytosolic thiouridylase subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-65605110-4	chr17	65604979	65605179	+	891.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355402, intron 1 of 6)	Tigger7|DNA|TcMar-Tigger	8476.0	NM_001355402	30960.0	Mm.266767	NM_013933	ENSMUSG00000024091	Vapa	33kDa|VAP33	vesicle-associated membrane protein, associated protein A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-41740023-4	chr5	41739998	41740198	+	847.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24122.0	NM_007524	12020.0	Mm.2530	NM_007524	ENSMUSG00000049691	Nkx3-2	Bapx1|NKX3.2|Nkx-3.2	NK3 homeobox 2	protein-coding	1.58040689927029	0.865267018231677	1.63074121567793	1.34418968979061	1.75905999455178	1.588417486673	0.853708741075683	0.840787946910371	-0.177067838445092	0.899236996859595	0.998431161219273
Merged-chr12-112642590-2	chr12	112642490	112642690	+	548.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-2238.0	NM_001161737	30954.0	Mm.289812	NM_013929	ENSMUSG00000064326	Siva1	CD27bp|Siva	SIVA1, apoptosis-inducing factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-95684138-2	chr16	95684038	95684238	+	709.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18269.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-26773186-4	chr10	26773062	26773262	+	985.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176837, intron 1 of 14)	intron (NM_176837, intron 1 of 14)	650.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-89679635-3	chr6	89679519	89679719	+	756.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34584.0	NM_053228	113855.0	Mm.377152	NM_053228	ENSMUSG00000096051	Vmn1r40	V1rb7	vomeronasal 1 receptor 40	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-92751106-2	chr13	92751006	92751206	+	733.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_011582)	TTS (NM_011582)	43712.0	NM_011582	21828.0	Mm.20865	NM_011582	ENSMUSG00000021702	Thbs4	TSP4	thrombospondin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-120620916-2	chr5	120620816	120621016	+	930.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_028041, intron 10 of 19)	intron (NM_028041, intron 10 of 19)	7786.0	NM_028041	71990.0	Mm.24495	NM_028041	ENSMUSG00000029599	Ddx54	2410015A15Rik|AI414901|DP97	DEAD (Asp-Glu-Ala-Asp) box polypeptide 54	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-126230093-2	chr4	126229972	126230172	+	754.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2c|LINE|L2	26247.0	NM_144941	245877.0	Mm.266716	NM_144941	ENSMUSG00000028849	Map7d1	AV028413|BC019977|Mtap7d1|Parcc1|Rprc1|mKIAA1187	MAP7 domain containing 1	protein-coding	0.658922201377711	1.78188843396683	0.912489899402196	1.64555589960282	1.00940034345792	0.708413534831725	0.6936528053355	1.56262937689253	-1.069892995112	0.473621090544936	0.926125823511231
Merged-chr18-67612428-3	chr18	67612347	67612547	+	640.166687	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	28908.0	NM_001357523	225659.0	Mm.111928	NM_001081073	ENSMUSG00000073542	Cep76	6230425F05Rik|9630013E05	centrosomal protein 76	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124024987-1	chr5	124024887	124025087	+	1000.0	f0_balb.idr	intron (NM_177876, intron 1 of 3)	L2b|LINE|L2	7273.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	2.18688571161531	3.18470867985947	2.38979601140062	3.41636533966183	3.33923496475763	3.72947075042284	3.38236306931389	3.74943251980273	1.09264536880367	0.0813115260113614	0.435621007578746
Merged-chr7-126135113-4	chr7	126134993	126135193	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028816, intron 9 of 23)	intron (NM_028816, intron 9 of 23)	-52682.0	NM_001358885	269994.0	Mm.39599	NM_001101488	ENSMUSG00000046182	Gsg1l	AI852434|C230098I05Rik|G630023A01Rik|Gm637|g1l	GSG1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-63931745-2	chr7	63931645	63931845	+	620.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021366, intron 1 of 1)	intron (NM_021366, intron 1 of 1)	7170.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-116849033-3	chr10	116848922	116849122	+	831.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033333, intron 4 of 24)	intron (NM_001033333, intron 4 of 24)	47857.0	NM_001033333	237558.0	Mm.336386	NM_001033333	ENSMUSG00000034057	Myrfl	Gm239	myelin regulatory factor-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-87255453-2	chr3	87255354	87255554	+	956.0	f0_balb.idr|f1_balb.idr	intron (NM_030707, intron 6 of 7)	B4A|SINE|B4	8070.0	NM_030707	80891.0	Mm.45173	NM_030707	ENSMUSG00000015852	Fcrls	2810439C17Rik|9330158F12|FcRH2sc|Fcrh2|IFGP2|IgSR|MMAN-g|Msr2|moFcRH2sc	Fc receptor-like S, scavenger receptor	protein-coding	2.53655009276474	1.77714855527028	2.53887164910135	2.21278209975173	3.00105086433651	2.37424238501811	2.13627118740896	3.32281908479863	1.02245611694023	0.204063001013073	0.69167790036705
Merged-chr13-52649239-2	chr13	52649139	52649339	+	756.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001198977)	TTS (NM_001198977)	52357.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127582606-2	chr10	127582533	127582733	+	812.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 19 of 88)	intron (NM_008512, intron 19 of 88)	38515.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-154659493-6	chr2	154659303	154659503	+	743.733337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029362, intron 1 of 4)	intron (NM_029362, intron 1 of 4)	2377.0	NM_029362	75608.0	Mm.262480	NM_029362	ENSMUSG00000038467	Chmp4b	2010012F05Rik|C76846|Snf7-2	charged multivesicular body protein 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-70832621-2	chr9	70832521	70832721	+	824.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001324473, intron 1 of 8)	intron (NM_001324473, intron 1 of 8)	102187.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-87755537-4	chr11	87755456	87755656	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1308.0	NR_029555	387160.0		NR_029555	ENSMUSG00000105196	Mir142	Mirn142|miR-142|mir-142a|mmu-mir-142|mmu-mir-142a	microRNA 142	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-15282405-2	chr9	15282305	15282505	+	794.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001199484)	TTS (NM_001199484)	-2538.0	NM_144933	234959.0	Mm.44151	NM_144933	ENSMUSG00000031935	Med17	77kDa|C330002H14Rik|Crsp6|Trap80	mediator complex subunit 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-37688047-2	chr10	37687947	37688147	+	884.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-487727.0	NR_131035	75877.0	Mm.402094	NR_131035	ENSMUSG00000111234	4930591E09Rik	-	RIKEN cDNA 4930591E09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-58503622-3	chr16	58503531	58503731	+	936.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357433, intron 2 of 10)	MTD|LTR|ERVL-MaLR	19795.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-23518170-4	chr13	23518059	23518259	+	993.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	tRNA-Ser-TCA_|tRNA|tRNA	-12885.0	NM_153173	69386.0	Mm.158272	NM_153173	ENSMUSG00000060981	Hist1h4h	1700024H08Rik	histone cluster 1, H4h	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-20371607-2	chr14	20371507	20371707	+	647.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001024512, intron 7 of 13)	MTD|LTR|ERVL-MaLR	17303.0	NM_134081	108671.0	Mm.2871	NM_134081	ENSMUSG00000021811	Dnajc9	5330419I01Rik|AU020082	DnaJ heat shock protein family (Hsp40) member C9	protein-coding	-1.50874880059862	-1.47511716453926	-1.4852876488768	-1.49364198752927	-1.50638792193216	-0.992828729615453	-1.48298527415345	-1.4921465649048	2.3185461113984	0.50391666537493	1
Merged-chr7-28390622-2	chr7	28390522	28390722	+	992.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_026042, intron 3 of 3)	L2b|LINE|L2	2068.0	NM_026042	67224.0	Mm.41647	NM_026042	ENSMUSG00000003444	Med29	2810405O22Rik|AU020902|Ixl	mediator complex subunit 29	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124475574-2	chr6	124475474	124475674	+	551.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-10790.0	NM_153508	232370.0	Mm.193701	NM_153508	ENSMUSG00000008153	Clstn3	CSTN3|Cs3|Cst-3|alc-beta	calsyntenin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-101847374-1	chr13	101847274	101847474	+	578.666687	f0_balb.idr	Intergenic	Intergenic	-79157.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-24415178-2	chr8	24415078	24415278	+	769.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23768.0	NM_026931	69068.0	Mm.25775	NM_026931	ENSMUSG00000056313	Tcim	1110065B09Rik|1810011O10Rik|AW121743|AW321058	transcriptional and immune response regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70441556-2	chr11	70441456	70441656	+	783.666687	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001271360)	TTS (NM_001271360)	3301.0	NR_106064	102465670.0		NR_106064	ENSMUSG00000099109	Mir7115	Gm27902|mmu-mir-7115	microRNA 7115	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-20672713-4	chr16	20672628	20672828	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001304432)	promoter-TSS (NM_001304432)	1.0	NM_001304432	208643.0	Mm.260256	NM_145941	ENSMUSG00000045983	Eif4g1	E030015G23Rik|eIF-4-gamma 1|eIF-4G 1|eIF-4G1|eIF4GI	eukaryotic translation initiation factor 4, gamma 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24159080-4	chr17	24158981	24159181	+	949.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172935, intron 3 of 10)	intron (NM_172935, intron 3 of 10)	4652.0	NM_172935	245847.0	Mm.87319	NM_172935	ENSMUSG00000036820	Amdhd2	5730457F11Rik	amidohydrolase domain containing 2	protein-coding	2.06678642558135	1.35968706096464	1.94790999824892	1.88963890704513	1.80340181264761	1.11395800688306	2.50726384928522	1.07190248142976	-0.143890540992397	0.901994032690503	0.998431161219273
Merged-chr7-25242834-2	chr7	25242734	25242934	+	945.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010155, exon 4 of 4)	3' UTR (NM_010155, exon 4 of 4)	-4983.0	NM_001031667	606496.0	Mm.491101	NM_001031667	ENSMUSG00000057177	Gsk3a	2700086H06Rik	glycogen synthase kinase 3 alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-148405867-3	chr6	148405765	148405965	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198967, intron 5 of 19)	intron (NM_198967, intron 5 of 19)	38487.0	NM_198967	387314.0	Mm.137858	NM_198967	ENSMUSG00000030306	Tmtc1	Arg99|BC023818	transmembrane and tetratricopeptide repeat containing 1	protein-coding	4.26284839808213	4.94825155298342	3.57663459177986	4.92192903008838	2.92440618717011	3.06901261055757	2.95176026150693	1.60512704798141	-2.58403121147506	1.23490303223091e-05	0.000550112620570783
Merged-chr8-79640749-2	chr8	79640649	79640849	+	943.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081164, intron 1 of 20)	intron (NM_001081164, intron 1 of 20)	1073.0	NM_001081164	73945.0	Mm.34348	NM_001081164	ENSMUSG00000036990	Otud4	4930431L18Rik|AI449692|D8Ertd69e|mKIAA1046	OTU domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135133996-2	chr5	135133896	135134096	+	693.166687	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_152880, exon 14 of 17)	non-coding (NR_152880, exon 14 of 17)	-15715.0	NM_013763	27368.0	Mm.36746	NM_013763	ENSMUSG00000005374	Tbl2	C76179|WS-bTRP	transducin (beta)-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-101779099-3	chr3	101779000	101779200	+	840.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	57123.0	NM_172295	242125.0	Mm.32900	NM_172295	ENSMUSG00000044313	Mab21l3	-	mab-21-like 3 (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-94909087-4	chr8	94908980	94909180	+	814.049988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033533, intron 4 of 8)	intron (NM_001033533, intron 4 of 8)	9018.0	NM_001033533	234582.0	Mm.277871	NM_001033533	ENSMUSG00000063605	Ccdc102a	BC027663|Gm586	coiled-coil domain containing 102A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-53250872-4	chr18	53250775	53250975	+	998.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029394, intron 1 of 6)	intron (NM_029394, intron 1 of 6)	5213.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-121294403-3	chr3	121294306	121294506	+	804.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155539, intron 1 of 2)	B2_Mm2|SINE|B2	2666.0	NM_024178	66789.0	Mm.269881	NM_024178	ENSMUSG00000039887	Alg14	5430428G01Rik|AI854024	asparagine-linked glycosylation 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55088532-2	chr14	55088432	55088632	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039198, intron 1 of 9)	intron (NM_001039198, intron 1 of 9)	3516.0	NM_001039198	239102.0	Mm.441113	NM_001039198	ENSMUSG00000040721	Zfhx2	ZFH-5	zinc finger homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-121709233-2	chr11	121709133	121709333	+	557.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144797, intron 2 of 3)	RMER4A|LTR|ERVK	6806.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-10105204-3	chr1	10105054	10105254	+	618.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026493, intron 17 of 29)	intron (NM_026493, intron 17 of 29)	66936.0	NM_026493	211660.0	Mm.244046	NM_026493	ENSMUSG00000056763	Cspp1	2310020J12Rik|4930413O22Rik|AA387550|BC055915|Cspp2|Cspp3	centrosome and spindle pole associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-6579414-4	chr15	6579286	6579486	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001278269)	promoter-TSS (NM_001278269)	-461.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-85554962-3	chr8	85554864	85555064	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019794, intron 1 of 8)	CpG	307.0	NM_019794	56445.0	Mm.475573	NM_019794	ENSMUSG00000031701	Dnaja2	1500017M13Rik|2010206B19Rik|DNAJ|DNJ3|Dnaj3|HIRIP4|PRO3015|mDj3	DnaJ heat shock protein family (Hsp40) member A2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-172514126-4	chr1	172514016	172514216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7014.0	NM_027972	71870.0	Mm.78373	NM_027972	ENSMUSG00000026546	Cfap45	1700028D05Rik|Ccdc19|Nesg1	cilia and flagella associated protein 45	protein-coding	4.46231874200538	4.94590094834923	5.32266664306183	3.71471831811912	3.54484530315043	2.93909528073593	3.77429584697935	4.62248574626205	-1.11842555742835	0.0279008775077823	0.225393839761767
Merged-chr2-102812100-2	chr2	102811956	102812156	+	861.25	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001177785, exon 16 of 16)	3' UTR (NM_001177785, exon 16 of 16)	-65296.0	NR_153853	102637542.0	Mm.371582	NR_153852		Gm13872	-	predicted gene 13872	ncRNA	0.765034052553526	0.706931486490698	0.472622544198282	0.464252746588092	0.773162895467683	1.51784395491987	0.474997186765372	1.29302884898647	2.49549098924333	0.133327486097728	0.570764692507331
Merged-chr2-3788570-3	chr2	3788432	3788632	+	726.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	75074.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44604548-4	chr9	44604436	44604636	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181324)	promoter-TSS (NM_181324)	-356.0	NM_001110826	13209.0	Mm.267061	NM_007841	ENSMUSG00000032097	Ddx6	1110001P04Rik|C430015D01Rik|E230023J21Rik|HLR2|mRCK/P54|p54|rck	DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-126613746-4	chr3	126613650	126613850	+	955.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025438, intron 2 of 18)	intron (NM_001025438, intron 2 of 18)	16799.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	4.69642702048922	5.19167960486723	4.49844339513068	4.42939813682967	4.19732330948836	4.56667903849346	4.305654269007	5.00666947073747	-0.220986981744023	0.564130168399511	0.960367595640396
Merged-chr8-27176983-4	chr8	27176875	27177075	+	972.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2329.0	NM_001080813	75767.0	Mm.205335	NM_029423	ENSMUSG00000031488	Rab11fip1	2010200K21Rik|4833414G05Rik|Rcp	RAB11 family interacting protein 1 (class I)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-174053225-4	chr1	174053142	174053342	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	2867.0	NM_146716	258711.0	Mm.377648	NM_146716	ENSMUSG00000047048	Olfr432	MOR123-2	olfactory receptor 432	protein-coding	3.93584381332618	4.85441065239388	3.74360532219664	3.29078029144442	3.80553808480932	3.63966246579695	3.31225704222812	3.99038184710189	-0.51564831281967	0.322636464903941	0.825019673042942
Merged-chr1-179488171-4	chr1	179488081	179488281	+	862.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027188, intron 1 of 11)	intron (NM_027188, intron 1 of 11)	29860.0	NM_027188	69726.0	Mm.222338	NM_027188	ENSMUSG00000055067	Smyd3	2410008A19Rik|Zmynd1	SET and MYND domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-119492420-4	chr1	119492330	119492530	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022327, intron 1 of 4)	RLTR26B_MM|LTR|ERVK	12352.0	NM_022327	64143.0	Mm.27832	NM_022327	ENSMUSG00000004451	Ralb	5730472O18Rik	v-ral simian leukemia viral oncogene B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-8623628-2	chr11	8623528	8623728	+	583.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 1 of 30)	URR1A|DNA|hAT-Charlie	40907.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-60670088-3	chr13	60670002	60670202	+	976.611084	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	67891.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	0.945121028990246	0.782303934454463	1.15691289056973	0.570065349623831	1.22935686552286	0.787801426966754	1.05154233473657	0.571228301426356	0.282245291231799	0.854902922489179	1
Merged-chr11-115268560-2	chr11	115268416	115268616	+	616.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_007997, intron 11 of 11)	intron (NM_007997, intron 11 of 11)	-1273.0	NM_010350	14813.0	Mm.39090	NM_010350	ENSMUSG00000020734	Grin2c	GluN2C|NMDAR2C|NR2C	glutamate receptor, ionotropic, NMDA2C (epsilon 3)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95820333-2	chr3	95820235	95820435	+	933.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	-1382.0	NM_001081293	75137.0	Mm.196275	NM_028328	ENSMUSG00000028106	Rprd2	2810036A19Rik|4930535B03Rik|6720469I21Rik|AL022841|AL022940|AU021304|BB077382|mKIAA0460	regulation of nuclear pre-mRNA domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-34363872-4	chr14	34363757	34363957	+	845.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8464.0	NM_183278	69134.0	Mm.27156	NM_183278	ENSMUSG00000043681	Fam25c	2200001I15Rik|Fam25	family with sequence similarity 25, member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-23769825-4	chr11	23769726	23769926	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009044, intron 1 of 9)	intron (NM_009044, intron 1 of 9)	1144.0	NM_009044	19696.0	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-34025235-4	chr11	34025148	34025348	+	823.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155520, intron 4 of 4)	intron (NR_155520, intron 4 of 4)	-21680.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-68259729-4	chr15	68259651	68259851	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145888)	promoter-TSS (NM_001145888)	-895.0	NM_198644	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	4.18786154173949	2.92525445127426	3.55361070178477	3.3755792176098	3.63731309800229	3.52680531682861	3.49881837640138	3.11374620711059	-0.227005582079061	0.684550125384582	0.996533206832645
Merged-chr17-71615071-2	chr17	71614971	71615171	+	725.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	-1144.0	NM_175639	72515.0	Mm.257762	NM_175639	ENSMUSG00000041057	Wdr43	2610318G08Rik|AU020887|AV024208|Wrd43|mKIAA0007	WD repeat domain 43	protein-coding	-2.05752322593321	-2.15521190974092	-2.16307242109104	-2.16952927915413	-2.17938029103484	-2.15350850414045	-2.16129297361887	-2.16837350464794	-0.683654500252594	0.846597994014493	1
Merged-chr10-82958508-4	chr10	82958431	82958631	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	-26966.0	NM_021439	58250.0	Mm.360747	NM_021439	ENSMUSG00000034612	Chst11	1110020P09Rik|C4ST|C4ST-1|C4ST1|C4s	carbohydrate sulfotransferase 11	protein-coding	5.80558712884649	6.20752330118047	5.40964222642113	5.84020148914143	6.52684711462357	6.51956531164088	5.90528609899723	6.76438115534783	0.682004575769408	0.00667571170540522	0.0823459791378874
Merged-chr15-35698668-2	chr15	35698575	35698775	+	741.833374	f0_balb.idr|f1_c57bl6.idr	intron (NM_177151, intron 33 of 61)	intron (NM_177151, intron 33 of 61)	-37628.0	NR_030606	100124469.0		NR_030606	ENSMUSG00000077890	Mir875	Mirn875|mir-875|mmu-mir-875	microRNA 875	ncRNA	2.99534673527814	2.74769072169323	2.98663097994233	1.9599773701448	2.26174828536343	1.68126651617404	2.45918378094313	1.32500595679494	-1.56507155976612	0.0813241047903019	0.435621007578746
Merged-chr16-23306573-2	chr16	23306473	23306673	+	825.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252506, intron 1 of 6)	intron (NM_001252506, intron 1 of 6)	16103.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46705413-2	chr8	46705313	46705513	+	596.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	34102.0	NR_045750	100503498.0	Mm.187358	NR_045750	ENSMUSG00000097534	Gm16675	-	predicted gene, 16675	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-103486827-4	chr15	103486725	103486925	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_153505, exon 25 of 31)	exon (NM_153505, exon 25 of 31)	-16209.0	NM_008800	18574.0	Mm.390792	NM_008800	ENSMUSG00000022489	Pde1b	Pde1b1	phosphodiesterase 1B, Ca2+-calmodulin dependent	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-34886710-4	chr4	34886594	34886794	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-3746.0	NM_013889	30046.0	Mm.38193	NM_013889	ENSMUSG00000039967	Zfp292	5730450D02Rik|5830493J20Rik|9430062L07Rik|AI449016|Krox-10|Zfp-15|Zfp15|Zn-15|Zn-16|mKIAA0530	zinc finger protein 292	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-69978553-2	chr8	69978453	69978653	+	753.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286450, intron 1 of 12)	MLTR11B|LTR|ERVK	-4170.0	NM_001113346	234366.0	Mm.270044	NM_145596	ENSMUSG00000036180	Gatad2a	1110066C11Rik|BC031407|C80248	GATA zinc finger domain containing 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-114927675-2	chr6	114927575	114927775	+	764.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356371, intron 2 of 5)	B3|SINE|B2	-5854.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117987288-4	chr11	117987177	117987377	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151726, intron 1 of 9)	CpG	420.0	NR_151726	74451.0	Mm.28864	NM_133757	ENSMUSG00000017715	Pgs1	2610019F11Rik|4933424M23Rik|SAF	phosphatidylglycerophosphate synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-69937665-2	chr8	69937548	69937748	+	891.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286450, intron 2 of 12)	intron (NM_001286450, intron 2 of 12)	-35090.0	NM_023312	67184.0	Mm.21162	NM_023312	ENSMUSG00000036199	Ndufa13	2700054G14Rik|AU022060|CDA016|CGI-39|GRIM-19|Grim19	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141149565-2	chr4	141149465	141149665	+	810.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172518, intron 1 of 9)	intron (NM_172518, intron 1 of 9)	1643.0	NM_172518	213499.0	Mm.28865	NM_172518	ENSMUSG00000028920	Fbxo42	6720460I06Rik|mKIAA1332	F-box protein 42	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-3665548-4	chr13	3665453	3665653	+	954.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31521.0	NM_001267724	142688.0	Mm.253061	NM_178283	ENSMUSG00000033781	Asb13	2210015B19Rik|6430573K02Rik|Asb-13|C85285	ankyrin repeat and SOCS box-containing 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-118601431-3	chr2	118601321	118601521	+	766.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009773, intron 2 of 22)	intron (NM_009773, intron 2 of 22)	3210.0	NM_009773	12236.0	Mm.29133	NM_009773	ENSMUSG00000040084	Bub1b	AU045529|BUBR1	BUB1B, mitotic checkpoint serine/threonine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-3122964-2	chr11	3122860	3123060	+	920.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A1|LTR|ERVL-MaLR	-1061.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-90219300-2	chr16	90219200	90219400	+	809.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-1442.0	NM_011434	20655.0	Mm.276325	NM_011434	ENSMUSG00000022982	Sod1	B430204E11Rik|Cu/Zn-SOD|CuZnSOD|Ipo-1|Ipo1|SODC|Sod-1	superoxide dismutase 1, soluble	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-40626618-2	chr19	40626518	40626718	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001304721, intron 1 of 9)	intron (NM_001304721, intron 1 of 9)	14252.0	NM_001304721	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-42349120-4	chr6	42349024	42349224	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011777)	promoter-TSS (NM_011777)	-704.0	NM_001289619	22793.0	Mm.282303	NM_011777	ENSMUSG00000029860	Zyx	9530098H06Rik|R75157	zyxin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167129342-2	chr2	167129248	167129448	+	847.041626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008420, intron 1 of 1)	intron (NM_008420, intron 1 of 1)	59470.0	NM_008420	16500.0	Mm.205341	NM_008420	ENSMUSG00000050556	Kcnb1	Kcr1-1|Kv2.1|Shab	potassium voltage gated channel, Shab-related subfamily, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-108295586-1	chr3	108295486	108295686	+	611.0	f0_balb.idr	intron (NM_019972, intron 1 of 19)	intron (NM_019972, intron 1 of 19)	11522.0	NM_019972	20661.0	Mm.157119	NM_019972	ENSMUSG00000068747	Sort1	2900053A11Rik|AI852375|Ntr3|Ntsr3	sortilin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95891979-4	chr3	95891889	95892089	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346514)	promoter-TSS (NM_001346514)	16.0	NM_153513	229600.0	Mm.89556	NM_153513	ENSMUSG00000038543	BC028528	L259	cDNA sequence BC028528	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10690593-4	chr19	10690487	10690687	+	989.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361958, intron 1 of 4)	intron (NM_001361958, intron 1 of 4)	1852.0	NM_001361959	107305.0	Mm.19091	NM_181403	ENSMUSG00000048832	Vps37c	5730409F24Rik|AU042646	vacuolar protein sorting 37C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-62180081-4	chr18	62180014	62180214	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007420)	promoter-TSS (NM_007420)	14.0	NM_001013754	225609.0	Mm.296917	NM_001013754	ENSMUSG00000054589	Gm9949	EG225609	predicted gene 9949	protein-coding	3.32798421582227	3.64712496363337	4.31971337528432	3.96490053568651	3.69167848267841	2.99535214689359	3.78766496620854	3.35645760074099	-0.538563021830609	0.305413100460492	0.806769348156094
Merged-chr8-94875937-2	chr8	94875837	94876037	+	633.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_053246, intron 1 of 8)	intron (NM_053246, intron 1 of 8)	375.0	NM_053246	114255.0	Mm.203949	NM_053246	ENSMUSG00000040631	Dok4	-	docking protein 4	protein-coding	-2.18375600819439	-2.15556918946382	-2.16409311609999	-2.17109492323169	-2.18177734563694	-2.01960173909294	-2.16216348594872	-2.16984160310277	0.759018020146679	0.829933115115583	1
Merged-chr12-73621914-4	chr12	73621812	73622012	+	788.604187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001313977, intron 2 of 14)	intron (NM_001313977, intron 2 of 14)	37116.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70354914-2	chr8	70354820	70355020	+	605.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-1641.0	NM_001122829	19704.0	Mm.258280	NM_030680	ENSMUSG00000058301	Upf1	B430202H16Rik|NORF1|PNORF-1|Rent1|Upflp	UPF1 regulator of nonsense transcripts homolog (yeast)	protein-coding	-0.287990165682393	-0.27553969024697	0.267968759383677	-0.282780905946563	0.0800826421486422	0.0730872073453859	-0.278730870212536	-0.282231441834909	0.228960062953582	0.92611635568275	1
Merged-chr16-86933174-2	chr16	86933074	86933274	+	657.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-126661.0	NR_153789	102635020.0	Mm.132956	NR_153789		Gm32461	-	predicted gene, 32461	ncRNA	-0.315739607005376	-0.441258269009549	-0.00762137989811829	-0.447677600015358	0.0956927694223064	-0.440438338761761	-0.444088032348518	-0.447190728160084	0.0833987336064178	0.974275041327467	1
Merged-chr10-94041602-1	chr10	94041502	94041702	+	560.0	f0_c57.idr	intron (NM_053072, intron 1 of 20)	intron (NM_053072, intron 1 of 20)	5601.0	NM_053072	13998.0	Mm.269596	NM_053072	ENSMUSG00000020021	Fgd6	AA123052|Etohd4|ZFYVE24	FYVE, RhoGEF and PH domain containing 6	protein-coding	0.362006275484405	1.61472204855902	1.23593201195119	0.379791083815019	0.364692710703143	1.31766376715436	0.393148854478653	0.381626439772853	-1.2848738371234	0.684211089981573	0.996533206832645
Merged-chr12-32131384-3	chr12	32131227	32131427	+	767.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70048.0	NM_011158	19088.0	Mm.25594	NM_011158	ENSMUSG00000002997	Prkar2b	AI451071|AW061005|PKARIIbeta|Pkarb2|RII(beta)	protein kinase, cAMP dependent regulatory, type II beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171386909-2	chr1	171386797	171386997	+	778.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_027893, exon 9 of 9)	3' UTR (NM_027893, exon 9 of 9)	-2063.0	NM_001005508	226652.0	Mm.251048	NM_001005508	ENSMUSG00000048865	Arhgap30	6030405P05Rik|Gm102|mFLJ00267	Rho GTPase activating protein 30	protein-coding	3.34495343046881	1.39290028415114	2.76386901562999	2.12422285555847	2.37964652340983	1.68827293572676	2.78608435987234	2.13565362090613	-0.628092397437961	0.49668666810933	0.936897994490085
Merged-chr16-92022918-2	chr16	92022818	92023018	+	835.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA9|LINE|L1	-35404.0	NM_017391	53881.0	Mm.217354	NM_017391	ENSMUSG00000089774	Slc5a3	AA623876|BF642829|Smit1	solute carrier family 5 (inositol transporters), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-99388010-2	chr5	99387910	99388110	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 2 of 3)	intron (NR_030692, intron 2 of 3)	-135083.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-115706886-3	chr8	115706791	115706991	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001025577)	promoter-TSS (NM_001025577)	3.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-52064480-2	chr16	52064380	52064580	+	670.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033238, intron 3 of 17)	intron (NM_001033238, intron 3 of 17)	32931.0	NM_001033238	208650.0	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-59970758-1	chr13	59970658	59970858	+	580.0	f0_balb.idr	Intergenic	Intergenic	-58953.0	NR_046142	328263.0	Mm.123405	NR_046142	ENSMUSG00000114531	A530065N20Rik	A530065N20	RIKEN cDNA A530046M15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-136217380-5	chr5	136217222	136217422	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001302938)	TTS (NM_001302938)	-18368.0	NM_025774	66801.0	Mm.425295	NM_025774	ENSMUSG00000039737	Prkrip1	8430424D23Rik|C114	Prkr interacting protein 1 (IL11 inducible)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-86490839-2	chr18	86490739	86490939	+	571.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144946, intron 7 of 10)	intron (NM_144946, intron 7 of 10)	95887.0	NM_144946	246317.0	Mm.329578	NM_144946	ENSMUSG00000050321	Neto1	AI851453|Btcl1|C130005O10Rik	neuropilin (NRP) and tolloid (TLL)-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-86584797-2	chr11	86584697	86584897	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029738)	promoter-TSS (NR_029738)	-639.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-106656266-2	chr9	106656122	106656322	+	639.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001160353)	promoter-TSS (NM_001160353)	-113.0	NM_001160353	108068.0	Mm.410822	NM_001160353	ENSMUSG00000023192	Grm2	4930441L02Rik|Gprc1b|mGluR2|mGluR7	glutamate receptor, metabotropic 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-43674221-2	chr7	43674121	43674321	+	787.0625	f1_balb.idr|f1_c57bl6.idr	intron (NM_145582, intron 1 of 2)	L2|LINE|L2	2190.0	NM_145582	233189.0	Mm.26514	NM_145582	ENSMUSG00000038888	Ctu1	Atpbd3|BC005752	cytosolic thiouridylase subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28705218-2	chr17	28705118	28705318	+	551.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001168514, intron 2 of 12)	intron (NM_001168514, intron 2 of 12)	12650.0	NM_001357724	26416.0	Mm.311337	NM_011951	ENSMUSG00000053436	Mapk14	CSBP2|Crk1|Csbp1|Mxi2|PRKM14|PRKM15|p38|p38-alpha|p38MAPK|p38a|p38alpha	mitogen-activated protein kinase 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-95796760-2	chr11	95796660	95796860	+	617.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-27740.0	NM_153104	237928.0	Mm.133075	NM_153104	ENSMUSG00000050860	Phospho1	D11Moh36|Phospo1	phosphatase, orphan 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-79250292-2	chr11	79250192	79250392	+	601.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019653, intron 2 of 8)	B1F1|SINE|Alu	4403.0	NM_019653	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119088450-2	chr11	119088350	119088550	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2213.0	NM_007625	12418.0	Mm.268070	NM_007625	ENSMUSG00000039989	Cbx4	MPc2|PC2	chromobox 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-160431024-2	chr2	160430924	160431124	+	550.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-63959.0	NM_010658	16658.0	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-127020600-2	chr4	127020500	127020700	+	730.333313	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045010)	promoter-TSS (NR_045010)	-701.0	NR_045010	71514.0	Mm.257276	NM_023603	ENSMUSG00000028820	Sfpq	1110004P21Rik|2810416M14Rik|5730453G22Rik|9030402K04Rik|AU021830|D4Ertd314e|Gm12940|PSF|REP1	splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-20652596-1	chr9	20652496	20652696	+	771.0	f0_balb.idr	intron (NM_023371, intron 1 of 3)	intron (NM_023371, intron 1 of 3)	466.0	NM_023371	23988.0	Mm.7906	NM_023371	ENSMUSG00000032171	Pin1	0610025L01Rik|D9Bwg1161e	protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-34206700-1	chr19	34206600	34206800	+	868.0	f0_balb.idr	intron (NM_001360718, intron 1 of 10)	intron (NM_001360718, intron 1 of 10)	-10808.0	NM_001360719	76630.0	Mm.130952	NM_029682	ENSMUSG00000024776	Stambpl1	1700095N21Rik|8230401J17Rik|ALMalpha|AMSH-FP	STAM binding protein like 1	protein-coding	-0.289851946104314	-0.737899168765768	-0.740932179010924	-0.743264539078787	-0.280173431323445	-0.737213951634147	-0.740264187498491	-0.742857569821679	0.0418983010157508	0.98887086484455	1
Merged-chr5-140624043-2	chr5	140623943	140624143	+	858.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001308040, intron 12 of 12)	intron (NM_001308040, intron 12 of 12)	16702.0	NM_008494	16848.0	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-85374808-4	chr6	85374720	85374920	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177466)	promoter-TSS (NM_177466)	-186.0	NM_001003955	52055.0	Mm.220334	NM_177466	ENSMUSG00000051343	Rab11fip5	9130206P09Rik|C75969|D6Ertd32e|GAF1|RIP11	RAB11 family interacting protein 5 (class I)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-50760137-4	chr16	50760026	50760226	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23283.0	NR_131006	78639.0	Mm.160109	NR_131005	ENSMUSG00000092276	1700116B05Rik	-	RIKEN cDNA 1700116B05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-84935766-4	chr10	84935685	84935885	+	960.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013441, intron 2 of 8)	intron (NM_001013441, intron 2 of 8)	18172.0	NM_183172	237422.0	Mm.18936	NM_183172	ENSMUSG00000035620	Ric8b	BC051080|Ric-8|Ric-8b	RIC8 guanine nucleotide exchange factor B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26438100-4	chr17	26437999	26438199	+	822.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081656, intron 2 of 4)	intron (NM_001081656, intron 2 of 4)	23134.0	NM_001081656	240055.0	Mm.133211	NM_001081656	ENSMUSG00000034413	Neurl1b	C230078M08Rik|EG240055	neuralized E3 ubiquitin protein ligase 1B	protein-coding	4.68531219727578	4.27665401720331	2.59858834999506	4.24588017943842	4.71890867841827	3.69023134799353	3.35333321698765	4.57833748895744	0.0857658276064773	0.875920299478056	0.998431161219273
Merged-chr12-51691190-5	chr12	51691135	51691335	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_021710, exon 1 of 6)	5' UTR (NM_021710, exon 1 of 6)	269.0	NM_001329698	11782.0	Mm.386749	NM_021710	ENSMUSG00000020955	Ap4s1	AI314282	adaptor-related protein complex AP-4, sigma 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-79684000-2	chr10	79683900	79684100	+	546.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359818, intron 1 of 4)	intron (NM_001359818, intron 1 of 4)	1805.0	NM_001359817	216150.0	Mm.21981	NM_177613	ENSMUSG00000020307	Cdc34	AI327276|E2-CDC34|UBE2R1	cell division cycle 34	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-120934810-3	chr7	120934706	120934906	+	810.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_025298, exon 13 of 21)	exon (NM_025298, exon 13 of 21)	17062.0	NM_001164096	26939.0	Mm.193632	NM_025298	ENSMUSG00000030880	Polr3e	RPC5|Sin	polymerase (RNA) III (DNA directed) polypeptide E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-94145256-2	chr2	94145156	94145356	+	565.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019657, intron 1 of 10)	intron (NM_019657, intron 1 of 10)	12653.0	NM_019657	56348.0	Mm.22505	NM_019657	ENSMUSG00000027195	Hsd17b12	2610510O05Rik|AI172963|KIK-I|Kik1	hydroxysteroid (17-beta) dehydrogenase 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-174561886-2	chr2	174561786	174561986	+	639.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	AT_rich|Low_complexity|Low_complexity	-81648.0	NM_001099328	100043757.0	Mm.48711	NM_001099328	ENSMUSG00000050600	Zfp831	-	zinc finger protein 831	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-86955758-2	chr12	86955658	86955858	+	667.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289431, intron 2 of 4)	intron (NM_001289431, intron 2 of 4)	8415.0	NM_001289432	217732.0	Mm.22337	NM_173735	ENSMUSG00000034157	Cipc	2310044G17Rik|AI842544|AI853744|Kiaa1737|mKIAA1737	CLOCK interacting protein, circadian	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67633999-4	chr10	67633933	67634133	+	898.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62074.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116672194-2	chr11	116672094	116672294	+	853.9166869999999	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028569)	promoter-TSS (NR_028569)	-311.0	NR_028569	100216536.0		NR_028569	ENSMUSG00000065640	Snord1c	-	small nucleolar RNA, C/D box 1C	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70116762-2	chr14	70116662	70116862	+	735.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021328, intron 1 of 8)	intron (NM_021328, intron 1 of 8)	16669.0	NM_001360404	57784.0	Mm.24186	NM_021328	ENSMUSG00000022089	Bin3	1700015F07Rik	bridging integrator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-78431693-2	chr10	78431593	78431793	+	564.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3106.0	NR_105837	102465221.0		NR_105837	ENSMUSG00000098932	Mir6410	Gm27916|mmu-mir-6410	microRNA 6410	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126721821-4	chr7	126721660	126721860	+	979.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-16944.0	NM_009898	12721.0	Mm.290482	NM_009898	ENSMUSG00000030707	Coro1a	Clabp|Lmb3|TACO|p57	coronin, actin binding protein 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-106296167-1	chr9	106296067	106296267	+	541.0	f1_c57bl6.idr	intron (NM_027354, intron 7 of 10)	intron (NM_027354, intron 7 of 10)	15106.0	NM_027354	70235.0	Mm.23054	NM_027354	ENSMUSG00000023345	Poc1a	2510040D07Rik|Wdr51a|cha	POC1 centriolar protein A	protein-coding	1.47282298757053	1.01258927258588	2.36298323841185	2.36208309961104	1.84037060606822	1.01778614698516	0.994289747439917	1.83316290696479	-1.22310720465873	0.327893562073887	0.830439127025577
Merged-chr1-36052818-4	chr1	36052718	36052918	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-15582.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85646305-2	chr12	85646205	85646405	+	927.714233	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40415.0	NM_016767	53314.0	Mm.6672	NM_016767	ENSMUSG00000034266	Batf	B-ATF|SFA-2	basic leucine zipper transcription factor, ATF-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-94354593-2	chr11	94354493	94354693	+	584.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029600, intron 26 of 30)	L2c|LINE|L2	26592.0	NM_146024	71452.0	Mm.141054	NM_027799	ENSMUSG00000020864	Ankrd40	1110011C06Rik|5530600A18Rik|Gcap15	ankyrin repeat domain 40	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-16305052-3	chr1	16304960	16305160	+	629.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111272, intron 11 of 12)	intron (NM_001111272, intron 11 of 12)	199178.0	NM_133832	98711.0	Mm.274376	NM_133832	ENSMUSG00000025921	Rdh10	3110069K09Rik|4921506A21Rik|AI875664|AW549993|D1Ertd762e|m366Asp	retinol dehydrogenase 10 (all-trans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102340540-4	chr12	102340405	102340605	+	830.5059809999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177620, intron 3 of 9)	intron (NM_177620, intron 3 of 9)	56864.0	NM_001161365	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	2.3067350085236	1.96175443743263	1.10202060459771	1.07962325186987	2.0770320491572	2.45383871149014	1.10828224201597	2.45460281591541	0.972866842414382	0.412139244228947	0.894659309956271
Merged-chr7-145098589-4	chr7	145098467	145098667	+	983.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	109552.0	NR_033626	100040049.0	Mm.102235	NR_033626	ENSMUSG00000109305	1810010D01Rik	Gm2572	RIKEN cDNA 1810010D01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3083927-2	chr4	3083827	3084027	+	853.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-88156.0	NM_001167534	100312470.0	Mm.480297	NM_001167534	ENSMUSG00000115072	Vmn1r2	Gm11776	vomeronasal 1 receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-103350188-3	chr14	103350072	103350272	+	677.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3372.0	NM_207215	105689.0	Mm.6478	NM_207215	ENSMUSG00000033004	Mycbp2	AU023734|AW107953|AW546647|C130061D10Rik|Pam|Phr1|R75243	MYC binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-116877335-4	chr4	116877310	116877510	+	954.642822	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001029912)	promoter-TSS (NM_001029912)	8.0	NM_001029912	74464.0	Mm.218946	NM_001029912	ENSMUSG00000033948	Zswim5	4933426E21Rik|AI503093|mKIAA1511	zinc finger SWIM-type containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-65844733-1	chr17	65844633	65844833	+	768.0	f1_balb.idr	Intergenic	Intergenic	40190.0	NM_001198949	19765.0	Mm.17009	NM_009067	ENSMUSG00000024096	Ralbp1	RLIP76|Rip1	ralA binding protein 1	protein-coding	0.693544511450497	0.807622965311558	0.426639378225376	0.594950363388403	1.25021375203182	0.436872084049313	0.428487098227408	1.09125862963024	1.23810620823034	0.467396042830841	1
Merged-chr3-96098777-4	chr3	96098660	96098860	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5767.0	NM_001025613	229603.0	Mm.272336	NM_001025613	ENSMUSG00000038495	Otud7b	2900060B22Rik|4930463P07Rik|AI462125|CEZANNE|Trabid2|Za20d1	OTU domain containing 7B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-119189107-1	chr2	119189007	119189207	+	592.0	f1_balb.idr	intron (NM_139139, intron 1 of 10)	B3|SINE|B2	14598.0	NM_001039223	623781.0	Mm.389344	NM_001039223	ENSMUSG00000055926	Gm14137	-	predicted gene 14137	protein-coding	2.34277359350156	1.41481518330412	2.43418766565328	2.36480907416189	2.61938137353656	2.53903684562828	1.64705990835068	3.03172239192518	0.765417861376395	0.396100923761431	0.883276804275027
Merged-chr10-98916412-6	chr10	98916279	98916479	+	748.777771	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359507, intron 1 of 21)	intron (NM_001359507, intron 1 of 21)	1227.0	NM_026482	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-67360991-3	chr1	67360883	67361083	+	888.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	237956.0	NM_001080809	227231.0	Mm.343942	NM_001080809	ENSMUSG00000025991	Cps1	4732433M03Rik|CPS|D1Ucla3	carbamoyl-phosphate synthetase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-64936689-4	chr9	64936593	64936793	+	820.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144813, intron 3 of 9)	intron (NM_144813, intron 3 of 9)	14914.0	NM_144813	214111.0	Mm.156124	NM_144813	ENSMUSG00000034452	Slc24a1	-	solute carrier family 24 (sodium/potassium/calcium exchanger), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70481744-2	chr11	70481644	70481844	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21760.0	NM_023158	66102.0	Mm.425692	NM_023158	ENSMUSG00000018920	Cxcl16	0910001K24Rik|AV290116|BB024863|CXCL16v1|CXCL16v2|SR-PSOX|Zmynd15|b2b498Clo	chemokine (C-X-C motif) ligand 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-73142035-4	chr14	73141936	73142136	+	980.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001170694)	promoter-TSS (NM_001170694)	-474.0	NM_001170694	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-37827864-4	chr13	37827753	37827953	+	953.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039188, intron 1 of 9)	CpG	460.0	NM_001039188	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-39113864-2	chr15	39113764	39113964	+	798.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198606, intron 1 of 10)	ORR1A2|LTR|ERVL-MaLR	990.0	NM_198606	223499.0	Mm.321937	NM_198606	ENSMUSG00000022300	Dcaf13	Gm83|Wdsof1	DDB1 and CUL4 associated factor 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-47152557-4	chr13	47152463	47152663	+	836.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146042, intron 1 of 7)	intron (NM_146042, intron 1 of 7)	-3893.0	NR_126083	319467.0	Mm.447279	NR_126083	ENSMUSG00000114961	A930002C04Rik	-	RIKEN cDNA A930002C04 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-115314776-3	chr9	115314674	115314874	+	925.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	-4353.0	NM_024222	68292.0	Mm.296158	NM_024222	ENSMUSG00000032437	Stt3b	1300006C19Rik|Simp	STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae)	protein-coding	3.4505953966976	3.34116488773351	3.62450596062309	3.46803473696603	1.30068626519074	1.48239519539969	2.35429918058642	2.27264600320487	-3.00612051119335	0.000143213950854758	0.00411728669893462
Merged-chr7-80340285-4	chr7	80340185	80340385	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133952)	promoter-TSS (NM_133952)	-66.0	NM_133952	101869.0	Mm.243024	NM_133952	ENSMUSG00000030533	Unc45a	AW538196	unc-45 myosin chaperone A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-32269365-2	chr17	32269265	32269465	+	887.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286630, intron 1 of 19)	B3|SINE|B2	14758.0	NM_198094	57261.0	Mm.253518	NM_020508	ENSMUSG00000024002	Brd4	Brd5|HUNK1|MCAP|WI-11513	bromodomain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-32185470-2	chr6	32185370	32185570	+	735.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_175750, exon 22 of 32)	exon (NM_175750, exon 22 of 32)	135182.0	NM_029587	76382.0	Mm.23510	NM_029587	ENSMUSG00000029766	1700012A03Rik	AI429084	RIKEN cDNA 1700012A03 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-91012717-4	chr12	91012613	91012813	+	980.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181815, intron 24 of 25)	intron (NM_181815, intron 24 of 25)	-33135.0	NR_045858	71349.0	Mm.442093	NR_045858	ENSMUSG00000085004	5430427M07Rik	-	RIKEN cDNA 5430427M07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-112274023-2	chr5	112273923	112274123	+	612.6999509999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2668.0	NM_001326590	22022.0	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-114659697-4	chr6	114659599	114659799	+	979.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253718, intron 2 of 19)	intron (NM_001253718, intron 2 of 19)	16602.0	NM_001253718	74244.0	Mm.275332	NM_028835	ENSMUSG00000030314	Atg7	1810013K23Rik|Agp7|Apg7l|Atg7l|Gm21553	autophagy related 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124360757-4	chr6	124360647	124360847	+	959.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3661.0	NM_001177502	76921.0	Mm.425335	NM_001177502	ENSMUSG00000079346	1700013D24Rik	-	RIKEN cDNA 1700013D24 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-8534367-2	chr4	8534267	8534467	+	813.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1277.0	NM_021518	59021.0	Mm.397471	NM_021518	ENSMUSG00000047187	Rab2a	9330148M11Rik|C80220|Rab2	RAB2A, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-38733653-1	chr6	38733553	38733753	+	698.0	f1_balb.idr	intron (NM_010433, intron 7 of 14)	B3|SINE|B2	70584.0	NM_001101507	665180.0	Mm.349066	NM_001101507	ENSMUSG00000079598	Clec2l	AI414054|AW122724|Gm1064	C-type lectin domain family 2, member L	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-79858545-4	chr1	79858431	79858631	+	826.950012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_009255, exon 1 of 9)	5' UTR (NM_009255, exon 1 of 9)	134.0	NM_009255	20720.0	Mm.3093	NM_009255	ENSMUSG00000026249	Serpine2	B230326M24Rik|PAI-1|PI-7|PI7|PN-1|Spi4	serine (or cysteine) peptidase inhibitor, clade E, member 2	protein-coding	0.100011990349821	-0.381939349664428	-0.386603088501706	-0.390210399581215	-0.395321954651376	-0.380889879358863	0.422574782060094	-0.389579629483281	0.988093478769146	0.709927738748555	1
Merged-chr7-141269068-4	chr7	141268998	141269198	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_028069)	TTS (NM_028069)	-2674.0	NM_001252600	54123.0	Mm.3233	NM_016850	ENSMUSG00000025498	Irf7	-	interferon regulatory factor 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-123818827-2	chr9	123818727	123818927	+	572.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110253, intron 14 of 17)	intron (NM_001110253, intron 14 of 17)	12350.0	NM_030712	80901.0	Mm.124289	NM_030712	ENSMUSG00000048521	Cxcr6	BB217514|BONZO|STRL33	chemokine (C-X-C motif) receptor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116601082-2	chr11	116600982	116601182	+	569.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001167680, intron 14 of 18)	intron (NM_001167680, intron 14 of 18)	7395.0	NM_009591	11298.0	Mm.42233	NM_009591	ENSMUSG00000020804	Aanat	AA-NAT|Nat-2|Nat4|Snat	arylalkylamine N-acetyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-122292663-3	chr14	122292579	122292779	+	935.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029556, intron 1 of 7)	intron (NM_029556, intron 1 of 7)	-59041.0	NR_015532	68245.0	Mm.443285	NR_015532	ENSMUSG00000100585	1700108J01Rik	-	RIKEN cDNA 1700108J01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-110866951-3	chr13	110866855	110867055	+	626.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36544.0	NR_131193	75139.0	Mm.490931	NR_131193	ENSMUSG00000114472	Gm38397	-	predicted gene, 38397	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-63686288-4	chr4	63686172	63686372	+	674.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51851.0	NR_151544	102632940.0	Mm.399154	NR_151544	ENSMUSG00000086817	Gm11482	-	predicted gene 11482	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-43767124-2	chr13	43767024	43767224	+	888.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CCCCAG)n|Simple_repeat|Simple_repeat	-17988.0	NM_009856	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-180117303-3	chr2	180117204	180117404	+	878.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2062.0	NM_144500	228983.0	Mm.253578	NM_144500	ENSMUSG00000039050	Osbpl2	C130070J12Rik|ORP-2|Orp2|mKIAA0772	oxysterol binding protein-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-53769937-4	chr11	53769834	53770034	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159396)	promoter-TSS (NM_001159396)	-80.0	NM_001159393	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76795018-4	chr15	76794929	76795129	+	909.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198420, intron 1 of 10)	intron (NM_198420, intron 1 of 10)	23141.0	NM_001168288	223666.0	Mm.322931	NM_198420	ENSMUSG00000033697	Arhgap39	9530053N22|AI843066|D15Wsu169e|Kiaa1688|Porf-2	Rho GTPase activating protein 39	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-100833480-4	chr13	100833388	100833588	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022885)	promoter-TSS (NM_022885)	-61.0	NM_022885	69048.0	Mm.402215	NM_022885	ENSMUSG00000021629	Slc30a5	1810010K08Rik|AF233321|ZNT5|ZTL1|ZnT-5|Zntl1	solute carrier family 30 (zinc transporter), member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-72788957-3	chr2	72788855	72789055	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_102348, intron 2 of 5)	intron (NR_102348, intron 2 of 5)	24762.0	NR_102348	76218.0	Mm.75260	NR_102348	ENSMUSG00000085427	6430710C18Rik	5033406J01Rik	RIKEN cDNA 6430710C18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115132936-2	chr11	115132836	115133036	+	684.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001169153, intron 1 of 6)	intron (NM_001169153, intron 1 of 6)	1056.0	NM_001347648	246746.0	Mm.277387	NM_145634	ENSMUSG00000047798	Cd300lf	CLIM1|CLM-1|CLM1|Digr2|F730004D16Rik|IREM1|IgSF13|LMIR3|Pigr3	CD300 molecule like family member F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-25289739-3	chr10	25289676	25289876	+	832.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018747, intron 1 of 7)	intron (NM_018747, intron 1 of 7)	9387.0	NM_018747	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-49321357-5	chr6	49321167	49321367	+	725.56665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311112, intron 1 of 3)	intron (NM_001311112, intron 1 of 3)	1993.0	NM_001311112	57895.0	Mm.32416	NM_175098	ENSMUSG00000050786	Ccdc126	6330407D12Rik|AA675040|AI465320|AL022711	coiled-coil domain containing 126	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36436794-4	chr1	36436696	36436896	+	992.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310517, intron 4 of 8)	L1MB7|LINE|L1	8475.0	NM_001013374	214895.0	Mm.287854	NM_001013374	ENSMUSG00000001143	Lman2l	A630028F14Rik|VIP36-like|VIPL	lectin, mannose-binding 2-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-4208924-4	chr12	4208809	4209009	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159537, intron 16 of 21)	intron (NM_001159537, intron 16 of 21)	25056.0	NM_134046	52504.0	Mm.70546	NM_134046	ENSMUSG00000020652	Cenpo	2810429O05Rik|8430427C03Rik|D12Ertd482e	centromere protein O	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-82953979-4	chr18	82953890	82954090	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177464, intron 1 of 5)	intron (NM_001177464, intron 1 of 5)	-33430.0	NR_033307	75853.0	Mm.420737	NR_033307		4930592I03Rik	-	RIKEN cDNA 4930592I03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-82208288-2	chr12	82208188	82208388	+	679.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001167983, intron 1 of 23)	intron (NM_001167983, intron 1 of 23)	38272.0	NM_001167983	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28528053-5	chr7	28527863	28528063	+	982.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5127.0	NM_177396	338374.0	Mm.246799	NM_177396	ENSMUSG00000060747	Ifnl3	IFL-1|IL-28B|INF-alpha|INF-lambda|Il28|Il28b	interferon lambda 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98715835-2	chr11	98715735	98715935	+	688.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361995, intron 8 of 25)	intron (NM_001361995, intron 8 of 25)	13539.0	NM_001361994	23989.0	Mm.246493	NM_011869	ENSMUSG00000017210	Med24	911GSE|AU040102|AW547152|D11Ertd307e|DRIP100|Gse2|Pparb2|Pparbp2|R75526|Thrap4|Trap100	mediator complex subunit 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-94296123-4	chr13	94296019	94296219	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10288.0	NM_001346609	107767.0	Mm.201455	NM_029153	ENSMUSG00000021687	Scamp1	4930505M11Rik|AI415563|AW122395	secretory carrier membrane protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-58476546-4	chr16	58476468	58476668	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357433, intron 6 of 10)	intron (NM_001357433, intron 6 of 10)	46858.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-78791682-4	chr11	78791580	78791780	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34915.0	NM_001076681	66274.0	Mm.258932	NM_001076681	ENSMUSG00000072640	Lyrm9	1810012P15Rik	LYR motif containing 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-24665081-4	chr6	24664986	24665186	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001167745)	promoter-TSS (NM_001167745)	-91.0	NM_028459	73178.0	Mm.1574	NM_028459	ENSMUSG00000029684	Wasl	2900021I12Rik|3110031I02Rik|N-WASP	Wiskott-Aldrich syndrome-like (human)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-57706272-4	chr15	57706141	57706341	+	993.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199449, intron 1 of 3)	intron (NM_199449, intron 1 of 3)	11574.0	NM_199449	387609.0	Mm.36557	NM_199449	ENSMUSG00000071757	Zhx2	Afr-1|Afr1|Raf|mKIAA0854	zinc fingers and homeoboxes 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-55039797-4	chr11	55039709	55039909	+	956.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6338.0	NM_013472	11749.0	Mm.265347	NM_013472	ENSMUSG00000018340	Anxa6	AW107198|Anx6|AnxVI|Cabm|Camb	annexin A6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-100688846-1	chr15	100688746	100688946	+	552.0	f1_c57bl6.idr	promoter-TSS (NM_033612)	promoter-TSS (NM_033612)	-926.0	NM_033612	109901.0	Mm.2131	NM_033612	ENSMUSG00000023031	Cela1	1810009A17Rik|1810062B19Rik|Ela-1|Ela1|PC-TsF	chymotrypsin-like elastase family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-43660880-4	chr7	43660790	43660990	+	971.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031181)	promoter-TSS (NM_031181)	-729.0	NM_031181	83382.0	Mm.157702	NM_031181	ENSMUSG00000030474	Siglece	Cd170|Siglec12|Siglec5|Siglec9|Siglecl1|mSiglec-E	sialic acid binding Ig-like lectin E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-111045679-1	chr4	111045579	111045779	+	643.0	f0_balb.idr	intron (NM_001284190, intron 4 of 12)	intron (NM_001284190, intron 4 of 12)	-369327.0	NR_033793	67621.0	Mm.45533	NM_026279	ENSMUSG00000028545	Bend5	2310026E23Rik	BEN domain containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-93994171-1	chr11	93994071	93994271	+	616.0	f1_balb.idr	Intergenic	B1_Mur4|SINE|Alu	-1920.0	NM_001199203	70834.0	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	0.149297252864817	0.00935457904535905	0.00246555827948239	-0.00288907087688353	0.860461294379228	0.80758778510195	0.00398987438111589	-0.00195107700319652	3.40292899321756	0.118011546828513	1
Merged-chr3-97933425-4	chr3	97933304	97933504	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033779, intron 1 of 1)	intron (NM_001033779, intron 1 of 1)	3231.0	NM_001033779	433632.0	Mm.212421	NM_001033779		Gm5544	EG433632	predicted gene 5544	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-53463716-2	chr11	53463616	53463816	+	853.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001290789, exon 2 of 7)	exon (NM_001290789, exon 2 of 7)	6511.0	NM_027917	71774.0	Mm.274370	NM_027917	ENSMUSG00000018387	Shroom1	Apx|Shrm1	shroom family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-12805896-3	chr19	12805777	12805977	+	636.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134152, intron 2 of 8)	L2|LINE|L2	7298.0	NM_134152	107321.0	Mm.313136	NM_134152	ENSMUSG00000024696	Lpxn	4933402K05Rik|A530083L21Rik|AV278559|LDPL	leupaxin	protein-coding	-0.231433718961557	0.257787320081271	-0.222666487715641	0.0670090354793742	0.319629318849175	-0.217406989299649	-0.221721223558262	-0.225392081781093	-0.366530501108771	0.880043976583664	1
Merged-chr17-34621782-2	chr17	34621682	34621882	+	655.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001302395, intron 7 of 8)	intron (NM_001302395, intron 7 of 8)	5366.0	NM_019441	54397.0	Mm.373627	NM_019441	ENSMUSG00000015474	Ppt2	0610007M19Rik|AA672937	palmitoyl-protein thioesterase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-75192683-4	chr1	75192574	75192774	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001288612)	promoter-TSS (NM_001288612)	514.0	NR_051998	52231.0	Mm.259326	NM_026187	ENSMUSG00000026199	Ankzf1	1300008P06Rik|2810025E10Rik|D1Ertd161e	ankyrin repeat and zinc finger domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-93498995-4	chr13	93498871	93499071	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_021310, exon 1 of 11)	exon (NM_021310, exon 1 of 11)	837.0	NM_021310	57748.0	Mm.100273	NM_021310	ENSMUSG00000021690	Jmy	-	junction-mediating and regulatory protein	protein-coding	-0.75479219083388	-0.738718537573673	0.293532667902482	-0.747856309639296	-0.753741706079616	-0.737590934911541	-0.742677292790408	-0.747143114681175	-4.19837354306982	0.0990940479759321	1
Merged-chr10-127604747-4	chr10	127604639	127604839	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 6 of 88)	intron (NM_008512, intron 6 of 88)	16409.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	6.61570616162883	6.48357757891525	6.0081631056251	6.63456098461435	6.50293339284923	6.75703374290476	6.64439618325453	6.75462029336867	0.219490050651748	0.280760155266303	0.783507600298906
Merged-chr5-107853960-3	chr5	107853863	107854063	+	715.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007964, intron 1 of 17)	ORR1D1-int|LTR|ERVL-MaLR	21144.0	NM_007964	14020.0	Mm.35796	NM_007964	ENSMUSG00000011831	Evi5	NB4S	ecotropic viral integration site 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33184058-1	chr16	33183958	33184158	+	742.0	f1_c57bl6.idr	Intergenic	MT2B|LTR|ERVL	-1013.0	NM_176840	106326.0	Mm.486405	NM_176840	ENSMUSG00000022807	Osbpl11	9430097N02Rik|AI132306|AU019795|ORP-11	oxysterol binding protein-like 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132794938-4	chr4	132794850	132795050	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033308, intron 1 of 5)	intron (NM_001033308, intron 1 of 5)	1414.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-73577455-2	chr12	73577355	73577555	+	555.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7341.0	NM_001313977	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-99246354-3	chr5	99246340	99246540	+	886.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181318, intron 1 of 13)	RLTR20C2_MM|LTR|ERVK	6487.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26498443-3	chr17	26498318	26498518	+	996.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA6|LINE|L1	10054.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-127490183-3	chr3	127490076	127490276	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001327938, intron 1 of 47)	URR1B|DNA|hAT-Charlie	8939.0	NM_001327938	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	4.97175449553148	4.70784287096725	4.75320840612485	4.99889581120054	3.35858109636538	1.6574641023075	1.57232329095758	1.49389093260499	-3.84414145593789	0.00770124259995205	0.090647000046656
Merged-chr7-29236656-2	chr7	29236556	29236756	+	558.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357668)	promoter-TSS (NM_001357668)	-938.0	NM_001357668	77254.0	Mm.36699	NM_029887	ENSMUSG00000030588	Yif1b	9430029K10Rik|Yip1b	Yip1 interacting factor homolog B (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-92881443-4	chr8	92881324	92881524	+	978.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357375, intron 7 of 12)	intron (NM_001357375, intron 7 of 12)	-19971.0	NM_027112	69543.0	Mm.440514	NM_027112	ENSMUSG00000078144	Capns2	2310005G05Rik|30K-2	calpain, small subunit 2	protein-coding	5.27594857787193	5.28248387346035	5.00379228270537	4.66349863686666	3.29171967607005	4.16361100149304	3.38676708692811	2.87565235833935	-2.04854163427082	2.08504239644699e-06	0.000120657582022046
Merged-chr19-38928102-2	chr19	38928002	38928202	+	585.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2888.0	NM_008234	15201.0	Mm.57223	NM_008234	ENSMUSG00000025001	Hells	AI323785|E130115I21Rik|LSH|Lysh|PASG|YFK8	helicase, lymphoid specific	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-20696418-2	chr18	20696318	20696518	+	892.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_019737, intron 5 of 8)	intron (NM_019737, intron 5 of 8)	-31158.0	NR_155534	102633478.0		NR_155534	ENSMUSG00000085595	Gm16090	-	predicted gene 16090	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69658718-1	chr11	69658618	69658818	+	543.0	f1_balb.idr	intron (NM_011900, intron 2 of 6)	intron (NM_011900, intron 2 of 6)	3681.0	NM_009235	20670.0	Mm.347499	NM_009235	ENSMUSG00000041287	Sox15	-	SRY (sex determining region Y)-box 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-147350802-2	chr4	147350702	147350902	+	783.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039209, intron 1 of 2)	intron (NM_001039209, intron 1 of 2)	174936.0	NM_001039209	195531.0	Mm.270762	NM_001039209	ENSMUSG00000078496	Zfp982	Gm13152	zinc finger protein 982	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-138622745-2	chr1	138622645	138622845	+	558.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2988.0	NM_001311148	59125.0	Mm.143817	NM_021605	ENSMUSG00000026393	Nek7	2810460C19Rik|AU020186	NIMA (never in mitosis gene a)-related expressed kinase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-98727806-2	chr10	98727706	98727906	+	726.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-186836.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-139156664-4	chr4	139156588	139156788	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23967.0	NR_033543	100038595.0	Mm.385206	NR_033543	ENSMUSG00000073739	Gm16287	-	predicted gene 16287	ncRNA	5.23517281633624	4.90747354176526	5.66673492644267	5.18176638981202	5.91909129784361	6.36302124081612	6.53259517729556	6.45061438611684	1.17184973175647	7.64229947781721e-06	0.000367749902947263
Merged-chr19-6141091-4	chr19	6140987	6141187	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019722)	promoter-TSS (NM_019722)	50.0	NM_019722	56327.0	Mm.21071	NM_019722	ENSMUSG00000024944	Arl2	2610009M23Rik|AI115441|AW553335	ADP-ribosylation factor-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53102160-2	chr4	53102060	53102260	+	555.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 7 of 49)	B3|SINE|B2	57735.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-80117372-4	chr15	80117262	80117462	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_207708, exon 4 of 4)	3' UTR (NM_207708, exon 4 of 4)	-15792.0	NM_025609	66513.0	Mm.288245	NM_025609	ENSMUSG00000022414	Tab1	2310012M03Rik|Map3k7ip1|b2b449Clo	TGF-beta activated kinase 1/MAP3K7 binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-40774458-4	chr4	40774328	40774528	+	834.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID2|SINE|ID	-16543.0	NM_021535	74255.0	Mm.289929	NM_021535	ENSMUSG00000028409	Smu1	2600001O03Rik|2610203K23Rik|AB044414|AI845086|AW556129|Bwd	smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-12883335-2	chr13	12883235	12883435	+	695.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-83256.0	NM_011118	18812.0	Mm.457984	NM_011118	ENSMUSG00000056457	Prl2c3	Ghd1|MRP-2|MRP-3|Mrpplf3|PLF-2|PLF-3|Plf2|Prl2c4|mrp/plf3	prolactin family 2, subfamily c, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-86752525-2	chr11	86752425	86752625	+	880.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001003908, intron 1 of 31)	(A)n|Simple_repeat|Simple_repeat	5042.0	NM_001003908	67300.0	Mm.254588	NM_001003908	ENSMUSG00000047126	Cltc	3110065L21Rik|CHC|R74732	clathrin, heavy polypeptide (Hc)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-42165124-4	chr16	42165020	42165220	+	725.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361282, intron 9 of 10)	intron (NM_001361282, intron 9 of 10)	138349.0	NR_105858	102466172.0		NR_105858	ENSMUSG00000098300	Mir6540	Gm27780|mir-6540|mmu-mir-6540	microRNA 6540	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-99497617-2	chr5	99497517	99497717	+	610.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 2 of 3)	intron (NR_030692, intron 2 of 3)	231443.0	NR_030692	319818.0	Mm.295233	NR_030692	ENSMUSG00000089809	A930011G23Rik	-	RIKEN cDNA A930011G23 gene	ncRNA	-1.70064632323792	-1.81294470997006	-1.82198078978096	-1.82940329477929	-1.8407275618158	-1.81098655378014	-1.67775643191689	-1.82807466993338	0.0376840119903865	0.991491645451152	1
Merged-chr1-152615161-2	chr1	152615061	152615261	+	840.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346119, intron 2 of 17)	LTR90A|LTR|LTR	10056.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-28350281-4	chr3	28350177	28350377	+	952.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026910, intron 1 of 32)	intron (NM_026910, intron 1 of 32)	-69666.0	NR_130342	100628591.0		NR_130342	ENSMUSG00000092990	Mir466q	Mir446q|mmu-mir-466q|mu-mir-446q	microRNA 466q	ncRNA	5.41412022131562	4.73831249655912	5.22919074922433	5.37973650925693	3.42864410614976	3.20689395801522	1.82806722946345	3.53225186463646	-2.6964671815336	6.86729192654651e-09	8.82790377157554e-07
Merged-chr9-106160875-3	chr9	106160759	106160959	+	616.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2B2|LTR|ERVL	-2721.0	NM_174846	235582.0	Mm.335420	NM_174846	ENSMUSG00000020258	Glyctk	6230410P16Rik|C430006L12	glycerate kinase	protein-coding	1.09663211511326	0.493045689046578	1.23049516828991	0.474847450273856	0.632923822265518	1.41193128939105	0.485090203789366	0.667117039637151	-0.0544262892800267	0.973783783680463	0.998431161219273
Merged-chr15-6540185-2	chr15	6540085	6540285	+	827.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39662.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-147349514-2	chr4	147349371	147349571	+	927.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039209, intron 1 of 2)	A-rich|Low_complexity|Low_complexity	173605.0	NM_001039209	195531.0	Mm.270762	NM_001039209	ENSMUSG00000078496	Zfp982	Gm13152	zinc finger protein 982	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-144207726-2	chr5	144207626	144207826	+	576.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027410, intron 11 of 24)	intron (NM_027410, intron 11 of 24)	15889.0	NM_001356992	70381.0	Mm.239412	NM_027410	ENSMUSG00000066621	Tecpr1	2210010N04Rik|mKIAA1358	tectonin beta-propeller repeat containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-39730344-2	chr10	39730244	39730444	+	647.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_038037, intron 1 of 2)	intron (NR_038037, intron 1 of 2)	1663.0	NR_038037	327744.0	Mm.295265	NM_183198	ENSMUSG00000087177	E130307A14Rik	-	RIKEN cDNA E130307A14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-30788643-3	chr13	30788526	30788726	+	709.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	39393.0	NM_013674	16364.0	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120547498-4	chr11	120547294	120547494	+	865.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033231, intron 1 of 4)	intron (NM_001033231, intron 1 of 4)	2333.0	NM_001033231	192173.0	Mm.262300	NM_001033231	ENSMUSG00000061111	Mcrip1	Fam195b	MAPK regulated corepressor interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-73192566-2	chr11	73192466	73192666	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357891, intron 4 of 11)	intron (NM_001357891, intron 4 of 11)	6453.0	NM_031251	83429.0	Mm.259852	NM_031251	ENSMUSG00000005949	Ctns	AI195360|AW049661	cystinosis, nephropathic	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-108270674-4	chr5	108270522	108270722	+	818.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026106, intron 1 of 2)	intron (NM_026106, intron 1 of 2)	1725.0	NM_026106	13486.0	Mm.303534	NM_026106	ENSMUSG00000029265	Dr1	1700121L09Rik|Dr1l|NC2|NC2beta	down-regulator of transcription 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-40731171-2	chr19	40731071	40731271	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001304721, intron 7 of 9)	Tigger2b|DNA|TcMar-Tigger	71401.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-115614338-4	chr8	115614244	115614444	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	92550.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-98791474-1	chr15	98791374	98791574	+	553.0	f1_balb.idr	intron (NM_021279, intron 2 of 3)	intron (NM_021279, intron 2 of 3)	1617.0	NM_021279	22408.0	Mm.1123	NM_021279	ENSMUSG00000022997	Wnt1	Int-1|Wnt-1|sw|swaying	wingless-type MMTV integration site family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-46957468-2	chr18	46957368	46957568	+	687.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1408.0	NM_178377	69456.0	Mm.210734	NM_178377	ENSMUSG00000042705	Commd10	2310003A05Rik|AU019438|DRWMS2|Tg(Vav1-icre)A2Kio|Vav-cre|Vav-iCre|Vav1-Cre|VavCre	COMM domain containing 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-48903075-3	chr11	48902992	48903192	+	587.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024230)	promoter-TSS (NM_001024230)	-940.0	NM_001024230	432555.0	Mm.338931	NM_001024230	ENSMUSG00000058163	Gm5431	EG432555|Irgb9b8	predicted gene 5431	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135545475-4	chr5	135545356	135545556	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146001)	promoter-TSS (NM_146001)	-334.0	NM_146001	215114.0	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-34193871-2	chr7	34193771	34193971	+	653.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_026549, intron 3 of 6)	B1_Mus2|SINE|Alu	2799.0	NM_026549	68079.0	Mm.38173	NM_026549	ENSMUSG00000002635	Pdcd2l	6030457N17Rik	programmed cell death 2-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-22989513-2	chr11	22989413	22989613	+	586.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-1080.0	NM_009837	12464.0	Mm.296985	NM_009837	ENSMUSG00000007739	Cct4	2610204B21Rik|A45|C78323|Cctd	chaperonin containing Tcp1, subunit 4 (delta)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-6256984-4	chr2	6256881	6257081	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040333, intron 3 of 6)	intron (NR_040333, intron 3 of 6)	-43987.0	NM_024208	67856.0	Mm.38342	NM_024208	ENSMUSG00000039063	Echdc3	2310005D12Rik|AI662097	enoyl Coenzyme A hydratase domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-7219486-2	chr9	7219386	7219586	+	561.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34981.0	NM_029775	76863.0	Mm.27293	NM_029775	ENSMUSG00000032002	Dcun1d5	3110001A18Rik|4833420K19Rik|AW060460|D430047L21Rik	DCN1, defective in cullin neddylation 1, domain containing 5 (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-10440094-4	chr3	10439983	10440183	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029068)	promoter-TSS (NM_029068)	47.0	NM_029068	74718.0	Mm.440548	NM_029068	ENSMUSG00000027534	Snx16	4930522N22Rik|AI117577|AI747675	sorting nexin 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-35555958-4	chr7	35555843	35556043	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033080)	promoter-TSS (NM_033080)	-15.0	NM_033080	110959.0	Mm.410206	NM_033080	ENSMUSG00000034875	Nudt19	D7Rp2|D7Rp2-r|D7Rp2-s|D7Rp2e|RP2-r|RP2-s	nudix (nucleoside diphosphate linked moiety X)-type motif 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-54896804-4	chr1	54896812	54897012	+	923.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081433, intron 1 of 27)	intron (NM_001081433, intron 1 of 27)	29475.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-21890642-4	chr14	21890541	21890741	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-41731.0	NM_026965	69156.0	Mm.11827	NM_026965	ENSMUSG00000021773	Comtd1	1810030M08Rik|MT773	catechol-O-methyltransferase domain containing 1	protein-coding	4.37776013152031	4.63296834365062	4.44334654427429	4.9025528183327	3.5529952529488	3.26396147161952	4.00789138853842	4.01810763158627	-1.13578674321466	0.00800713849466389	0.093128336641551
Merged-chr9-100520761-4	chr9	100520653	100520853	+	753.716675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010878, intron 1 of 3)	intron (NM_010878, intron 1 of 3)	-13897.0	NM_001324530	17973.0	Mm.181485	NM_010878	ENSMUSG00000032475	Nck1	6330586M15Rik|D230010O13Rik|Nck|Nck-1	non-catalytic region of tyrosine kinase adaptor protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-144706562-3	chr3	144706439	144706639	+	906.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001282037, intron 4 of 10)	intron (NM_001282037, intron 4 of 10)	13796.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-90235019-4	chr9	90234907	90235107	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 3 of 12)	intron (NM_194334, intron 3 of 12)	35762.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4127705-2	chr19	4127605	4127805	+	958.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001078649, intron 4 of 7)	intron (NM_001078649, intron 4 of 7)	1745.0	NM_025889	66990.0	Mm.276255	NM_025889		Tmem134	2410001H17Rik|AI463452	transmembrane protein 134	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-39166039-2	chr6	39165939	39166139	+	778.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033430, intron 8 of 19)	intron (NM_001033430, intron 8 of 19)	40734.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-39607366-4	chr18	39607263	39607463	+	993.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-120118.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-5299366-3	chr9	5299237	5299437	+	953.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009807, exon 2 of 10)	exon (NM_009807, exon 2 of 10)	820.0	NM_009807	12362.0	Mm.1051	NM_009807	ENSMUSG00000025888	Casp1	ICE|Il1bc	caspase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-83764733-1	chr17	83764633	83764833	+	683.0	f0_balb.idr	intron (NM_054082, intron 7 of 16)	intron (NM_054082, intron 7 of 16)	58570.0	NM_001171052	116871.0	Mm.277668	NM_054082	ENSMUSG00000055817	Mta3	1110002J22Rik|mKIAA1266	metastasis associated 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122731483-3	chr5	122731387	122731587	+	880.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_145358, exon 16 of 16)	3' UTR (NM_145358, exon 16 of 16)	23943.0	NM_001310718	18438.0	Mm.290884	NM_011026	ENSMUSG00000029470	P2rx4	AI504491|AW555605|D5Ertd444e|P2X4	purinergic receptor P2X, ligand-gated ion channel 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-83957079-4	chr9	83956998	83957198	+	922.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199195, intron 3 of 10)	intron (NM_199195, intron 3 of 10)	8317.0	NM_199195	12040.0	Mm.12819	NM_199195	ENSMUSG00000032263	Bckdhb	BCKDE1B|BCKDH E1-beta	branched chain ketoacid dehydrogenase E1, beta polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-155532944-3	chr1	155532842	155533042	+	842.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5831.0	NR_132128	433367.0	Mm.359304	NR_132128	ENSMUSG00000073535	Gm5532	EG433367	predicted gene 5532	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-112995772-4	chr13	112995673	112995873	+	696.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037914, intron 3 of 6)	intron (NM_001037914, intron 3 of 6)	1905.0	NM_001037914	622408.0	Mm.360976	NM_001037914	ENSMUSG00000074651	Mcidas	EG622408|Gm6320|Idas|Mci|Mcin	multiciliate differentiation and DNA synthesis associated cell cycle protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-6624105-2	chr11	6624005	6624205	+	833.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001130457, exon 3 of 13)	exon (NM_001130457, exon 3 of 13)	1962.0	NM_001130457	21379.0	Mm.247761	NM_134011	ENSMUSG00000000384	Tbrg4	2310042P22Rik|AA120735|AA408001|AI527316|Cpr2|R74877|Tb-12|mKIAA0948	transforming growth factor beta regulated gene 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6258256-2	chr19	6258156	6258356	+	855.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_194348, exon 34 of 40)	exon (NM_194348, exon 34 of 40)	-6387.0	NR_029830	723957.0		NR_029830	ENSMUSG00000065582	Mir194-2	Mirn194-2|mir-194-2	microRNA 194-2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-125462444-1	chr5	125462344	125462544	+	793.666687	f1_balb.idr	Intergenic	Intergenic	-13429.0	NM_030210	78894.0	Mm.431573	NM_030210	ENSMUSG00000029482	Aacs	2210408B16Rik|SUR5	acetoacetyl-CoA synthetase	protein-coding	-0.854058440729434	0.350130902370778	-0.842969446669302	-0.847090325872083	-0.853011584238196	-0.83302558815076	-0.841801670470746	-0.846366347285773	-3.66898573382433	0.203709016371174	1
Merged-chr18-53862487-1	chr18	53862387	53862587	+	1000.0	f0_balb.idr	5' UTR (NM_152809, exon 1 of 13)	5' UTR (NM_152809, exon 1 of 13)	374.0	NM_152809	70425.0	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	2.3109343099589	1.84517777399783	2.15785155715717	2.19272502437361	1.90475948484412	1.48460252704463	1.93970222159531	1.19210817174211	-1.33508005635091	0.190632900264204	0.669546561020494
Merged-chr3-116133507-3	chr3	116133401	116133601	+	815.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3813.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	2.47437366982742	2.50565337070257	2.19725651066432	1.70066513182559	1.6331541541955	2.71666016431619	2.08266167647083	1.51306938841226	-0.42170432461264	0.653532193039348	0.986782418856054
Merged-chr6-88379942-4	chr6	88379855	88380055	+	928.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023060, intron 1 of 6)	intron (NM_023060, intron 1 of 6)	66584.0	NM_023060	65967.0	Mm.333237	NM_023060	ENSMUSG00000033216	Eefsec	Selb|mSelB|sec	eukaryotic elongation factor, selenocysteine-tRNA-specific	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3911892-4	chr19	3911785	3911985	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271443, intron 1 of 6)	intron (NM_001271443, intron 1 of 6)	889.0	NM_144870	225887.0	Mm.44227	NM_144870	ENSMUSG00000059734	Ndufs8	BC021616|CI-23kD|TYKY	NADH dehydrogenase (ubiquinone) Fe-S protein 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-144906041-3	chr4	144905931	144906131	+	637.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357274, intron 2 of 6)	intron (NM_001357274, intron 2 of 6)	12894.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55238045-2	chr19	55237945	55238145	+	648.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081076, exon 2 of 21)	exon (NM_001081076, exon 2 of 21)	3191.0	NM_001081076	73707.0	Mm.489987	NM_001081076	ENSMUSG00000055523	Gucy2g	2410077I05Rik|GC-G	guanylate cyclase 2g	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-74570816-4	chr17	74570712	74570912	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007566, intron 7 of 72)	intron (NM_007566, intron 7 of 72)	42517.0	NM_007566	12211.0	Mm.442564	NM_007566	ENSMUSG00000024073	Birc6	A430032G04Rik|A430040A19Rik|AA501170|Bruce|D630005A10Rik|mKIAA1289	baculoviral IAP repeat-containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-135245931-2	chr3	135245831	135246031	+	618.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_173762, intron 29 of 45)	intron (NM_173762, intron 29 of 45)	33368.0	NM_173762	229841.0	Mm.161470	NM_173762	ENSMUSG00000045328	Cenpe	312kDa|AU019344|BC049989|C530022J18|CENP-E|Kif10	centromere protein E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-135536048-1	chr7	135535948	135536148	+	569.0	f1_balb.idr	Intergenic	Intergenic	-1776.0	NM_011212	19267.0	Mm.945	NM_011212	ENSMUSG00000041836	Ptpre	PTPe|PTPepsilon|RPTPepsilon	protein tyrosine phosphatase, receptor type, E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-8311343-2	chr12	8311243	8311443	+	590.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2090.0	NM_021429	58240.0	Mm.309954	NM_021429	ENSMUSG00000020605	Hs1bp3	-	HCLS1 binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-23517698-4	chr13	23517598	23517798	+	866.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	tRNA-Met-i|tRNA|tRNA	-13346.0	NM_153173	69386.0	Mm.158272	NM_153173	ENSMUSG00000060981	Hist1h4h	1700024H08Rik	histone cluster 1, H4h	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-23134249-4	chr19	23134147	23134347	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6979.0	NM_010638	16601.0	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|Gm9971	Kruppel-like factor 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-108792866-4	chr12	108792769	108792969	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009537)	promoter-TSS (NM_009537)	-442.0	NM_009537	22632.0	Mm.3868	NM_009537	ENSMUSG00000021264	Yy1	AW488674|NF-E1	YY1 transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-73587150-1	chr6	73587050	73587250	+	716.0	f0_balb.idr	Intergenic	Lx8|LINE|L1	-116129.0	NR_108032	73408.0	Mm.233629	NR_108032	ENSMUSG00000107408	1700065L07Rik	-	RIKEN cDNA 1700065L07 gene	ncRNA	0.123872128073965	0.14284840516371	0.136645362609349	0.857977366671241	0.125060570643563	0.344034810138335	0.475162379939874	0.679232322234004	0.335452228870502	0.868505653192538	1
Merged-chr12-24980907-2	chr12	24980806	24981006	+	695.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081378, intron 1 of 31)	intron (NM_001081378, intron 1 of 31)	5974.0	NM_001081378	77480.0	Mm.250641	NM_001081378	ENSMUSG00000036333	Kidins220	3110039L19Rik|AI194387|AI316525|C330002I19Rik|mKIAA1250	kinase D-interacting substrate 220	protein-coding	1.06923436758463	1.14504753267656	0.490881373967963	1.24169780413902	0.766151366952695	0.501738661861857	0.492842641236374	0.663362961491265	-2.3854282028778	0.158073511521139	1
Merged-chr12-69475569-4	chr12	69475464	69475664	+	832.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_038060)	promoter-TSS (NR_038060)	-14.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	1.8144274607678	1.20349165941728	2.53226377539886	1.14739988041071	2.25863014017527	1.71560019465179	2.92174456535742	2.06072253106852	1.19571107583312	0.261116625061665	0.762408459680314
Merged-chr1-194962394-4	chr1	194962302	194962502	+	982.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033564, intron 2 of 4)	intron (NR_033564, intron 2 of 4)	14557.0	NR_033564	320400.0	Mm.417608	NR_033564	ENSMUSG00000097325	Gm16897	C030002c11rik	predicted gene, 16897	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-119826596-4	chr8	119826502	119826702	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028071, intron 2 of 3)	intron (NM_028071, intron 2 of 3)	13977.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-184824748-4	chr1	184824652	184824852	+	950.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133684, intron 4 of 7)	intron (NM_133684, intron 4 of 7)	-2264.0	NR_035502	100316821.0		NR_035502	ENSMUSG00000088559	Mir1981	mir-1981|mmu-mir-1981	microRNA 1981	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32583601-4	chr2	32583517	32583717	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_198191, exon 10 of 10)	3' UTR (NM_198191, exon 10 of 10)	-3461.0	NM_001276425	20448.0	Mm.27446	NM_011373	ENSMUSG00000079442	St6galnac4	SIAT7-D|ST6GalNAcIV|Siat7d	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-124321300-2	chr3	124321200	124321400	+	637.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_146140, exon 1 of 1)	exon (NM_146140, exon 1 of 1)	263.0	NM_146140	229801.0	Mm.165810	NM_146140	ENSMUSG00000044528	Tram1l1	A830091N21Rik	translocation associated membrane protein 1-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-130529585-3	chr2	130529505	130529705	+	865.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355161, intron 7 of 21)	intron (NM_001355161, intron 7 of 21)	34144.0	NR_040348	321014.0	Mm.442588	NR_040348	ENSMUSG00000060029	4930473A02Rik	-	RIKEN cDNA 4930473A02 gene	ncRNA	0.637217375025779	1.25055092127714	0.664620777672564	1.15888669936831	0.969523351457673	1.40038214490602	0.667501124963954	1.75197379754683	1.27679101968611	0.397027686908369	0.883497485228651
Merged-chr7-45018533-2	chr7	45018433	45018633	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360132)	promoter-TSS (NM_001360132)	591.0	NM_009101	20130.0	Mm.389894	NM_009101	ENSMUSG00000038387	Rras	AI573426	related RAS viral (r-ras) oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-35209775-4	chr13	35209661	35209861	+	932.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_126478)	TTS (NR_126478)	2287.0	NR_126478	75543.0	Mm.489052	NR_126478	ENSMUSG00000113770	1700019C18Rik	-	RIKEN cDNA 1700019C18 gene	ncRNA	1.05676107153189	0.929192194236634	0.757219666206008	0.851003619757015	0.419461931608263	0.441930736375403	0.434625333719052	0.73477795527931	-2.70502022284349	0.125828268808673	1
Merged-chr3-101494036-4	chr3	101493948	101494148	+	920.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	110659.0	NM_144900	11928.0	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding	-0.0255275595909676	-0.150891520953118	0.400586507818808	-0.159077283773675	-0.0215108839924276	-0.149847997019211	0.411512655732806	-0.15845541934538	0.0410260331601437	0.985289964818835	1
Merged-chr17-24533779-4	chr17	24533677	24533877	+	957.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177375)	promoter-TSS (NM_177375)	-30.0	NM_177375	328778.0	Mm.266033	NM_177375	ENSMUSG00000079657	Rab26	A830020M03Rik	RAB26, member RAS oncogene family	protein-coding	-2.18308165884198	-2.15547475440471	-2.16382331017202	-2.1706810624505	-2.18114370519566	-2.15366558754311	-2.03057248461154	-2.16945352807143	0.759018020146679	0.829933115115583	1
Merged-chr11-115602103-2	chr11	115602003	115602203	+	943.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173048, intron 1 of 16)	intron (NM_173048, intron 1 of 16)	1813.0	NM_001252067	260302.0	Mm.119479	NM_173048	ENSMUSG00000020740	Gga3	C230037M19Rik|mKIAA0154	golgi associated, gamma adaptin ear containing, ARF binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-103483537-4	chr2	103483443	103483643	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009804, intron 1 of 12)	intron (NM_009804, intron 1 of 12)	1610.0	NM_009804	12359.0	Mm.4215	NM_009804	ENSMUSG00000027187	Cat	2210418N07|Cas-1|Cas1|Cs-1	catalase	protein-coding	-2.05752322593321	-2.15521190974092	-2.16307242109104	-2.16952927915413	-2.17938029103484	-2.15350850414045	-2.16129297361887	-2.16837350464794	-0.683654500252594	0.846597994014493	1
Merged-chr15-62383030-3	chr15	62382934	62383134	+	635.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	-163583.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-37640541-2	chr1	37640441	37640641	+	575.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028096, intron 2 of 9)	intron (NM_028096, intron 2 of 9)	79270.0	NM_028096	72097.0	Mm.142607	NM_028096	ENSMUSG00000026090	2010300C02Rik	-	RIKEN cDNA 2010300C02 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99927649-2	chr7	99927549	99927749	+	684.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_175388, intron 4 of 5)	intron (NM_175388, intron 4 of 5)	52809.0	NM_175388	108937.0	Mm.323087	NM_175388	ENSMUSG00000058761	Rnf169	2900057K09Rik	ring finger protein 169	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-53158816-4	chr18	53158720	53158920	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17472.0	NM_001357463	67804.0	Mm.252171	NM_026386	ENSMUSG00000034484	Snx2	0610030A03Rik	sorting nexin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-3610134-4	chr13	3610045	3610245	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360838, intron 1 of 19)	intron (NM_001360838, intron 1 of 19)	963.0	NM_134063	105203.0	Mm.221609	NM_134063	ENSMUSG00000033799	Fam208b	AI645998|Pap20|mKIAA2006	family with sequence similarity 208, member B	protein-coding	2.3106934711667	2.44902390505592	2.20752013789619	2.66721932089732	2.81894279490895	2.30038984901307	3.27970827755837	3.31046130904668	1.13145641087155	0.120983701758589	0.545735152401246
Merged-chr3-147071158-4	chr3	147071054	147071254	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1K|LTR|ERVL-MaLR	218787.0	NM_001302957	70892.0	Mm.187793	NM_027594	ENSMUSG00000036745	Ttll7	1110049N09Rik|4921517B04Rik|C630030B20|mTTLL7	tubulin tyrosine ligase-like family, member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-148995262-4	chr5	148995171	148995371	+	990.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_102383)	promoter-TSS (NR_102383)	-56.0	NR_102384	319982.0	Mm.33303	NR_102383	ENSMUSG00000106951	5930430L01Rik	-	RIKEN cDNA 5930430L01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115514876-4	chr5	115514781	115514981	+	932.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011223, intron 1 of 10)	intron (NM_011223, intron 1 of 10)	8205.0	NM_133915	19303.0	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	3.14519488246957	3.62566009077849	1.68298286651413	3.32149527617983	2.89319543052668	3.56656481791044	4.2500141365854	4.13089736747101	1.05001324646596	0.111010674103767	0.52126279318319
Merged-chr9-65543335-2	chr9	65543235	65543435	+	639.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	36752.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-62872848-2	chr9	62872748	62872948	+	778.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_138304, intron 4 of 4)	intron (NM_138304, intron 4 of 4)	-10824.0	NR_003965	677044.0	Mm.422004	NR_003965	ENSMUSG00000074250	Gm10653	-	ribsomal protein S2 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-61459524-4	chr18	61459412	61459612	+	857.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25095.0	NR_045419	442846.0	Mm.417648	NR_045419		A530050N04Rik	-	RIKEN cDNA A530050N04 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-75729004-2	chr12	75728904	75729104	+	957.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030750, intron 1 of 2)	B3A|SINE|B2	6725.0	NM_030750	81535.0	Mm.280199	NM_030750	ENSMUSG00000021054	Sgpp1	AI463453|SPP|SPP1|Spph1	sphingosine-1-phosphate phosphatase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-103919672-2	chr2	103919572	103919772	+	665.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18721.0	NR_131913	100996933.0	Mm.394449	NR_131913		Lincred1	-	long intergenic non-protein coding RNA of erythroid differentiation 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-120577997-2	chr2	120577897	120578097	+	750.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_009222, intron 1 of 7)	PB1D9|SINE|Alu	10326.0	NM_009222	20619.0	Mm.245715	NM_009222	ENSMUSG00000027287	Snap23	23kDa|AA408749|SNAP-23|Sndt|Syndet	synaptosomal-associated protein 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-57570594-4	chr6	57570496	57570696	+	902.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10396.0	NM_025992	67138.0	Mm.297393	NM_025992	ENSMUSG00000029798	Herc6	1700121D12Rik|2510038N07Rik|4930427L17Rik|AI451296|CEB1|Herc5	hect domain and RLD 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-119659656-2	chr4	119659556	119659756	+	615.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008191)	promoter-TSS (NM_008191)	-711.0	NM_008191	14916.0	Mm.278	NM_008191	ENSMUSG00000032978	Guca2b	AV066530|Gcap2|Ugn	guanylate cyclase activator 2b (retina)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-87736472-2	chr11	87736372	87736572	+	747.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_172448)	TTS (NM_172448)	-1079.0	NM_001355753	20922.0	Mm.622	NM_009296	ENSMUSG00000020485	Supt4a	AL022777|Supt4h|Supt4h1|Supt4h1a	suppressor of Ty 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80186171-2	chr7	80186071	80186271	+	896.833374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013659)	promoter-TSS (NM_013659)	-670.0	NM_013659	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-110421808-1	chr5	110421708	110421908	+	574.0	f1_balb.idr	intron (NM_001142642, intron 2 of 18)	intron (NM_001142642, intron 2 of 18)	26695.0	NM_001317042	381668.0	Mm.348782	NM_028596	ENSMUSG00000043323	Fbrsl1	2410025L10Rik|AI467568|Gm1049|Gm29766|mKIAA1545	fibrosin-like 1	protein-coding	1.4059342576412	1.28675861551357	2.15079393020853	2.08931318892659	2.10436273943422	2.24413826146317	2.73228716718371	2.21290179819505	1.40484177832709	0.147817339466761	0.598081982550202
Merged-chr12-102383618-2	chr12	102383518	102383718	+	757.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177620, intron 8 of 9)	intron (NM_177620, intron 8 of 9)	56195.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-98349345-2	chr7	98349245	98349445	+	828.6999509999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11943.0	NM_001168540	244152.0	Mm.25317	NM_001024619	ENSMUSG00000049580	Tsku	9530051K01Rik|E2ig4|Lrrc54|Tsk	tsukushi, small leucine rich proteoglycan	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-163418718-2	chr2	163418618	163418818	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025699, intron 1 of 3)	intron (NM_025699, intron 1 of 3)	752.0	NM_025699	66680.0	Mm.25119	NM_025699	ENSMUSG00000035399	Oser1	3230401D17Rik|AI256769|Perit1	oxidative stress responsive serine rich 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-119575194-4	chr8	119575102	119575302	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026648)	promoter-TSS (NM_026648)	-2.0	NM_175185	72552.0	Mm.36756	NM_175185	ENSMUSG00000034189	Hsdl1	2700067E09Rik	hydroxysteroid dehydrogenase like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-144570342-4	chr3	144570238	144570438	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053102)	promoter-TSS (NM_053102)	-89.0	NM_053102	93684.0	Mm.29812	NM_053102	ENSMUSG00000037072	Selenof	9430015P09Rik|Sep15	selenoprotein F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-55211524-4	chr13	55211441	55211641	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008739, intron 1 of 22)	CpG	1759.0	NM_008739	18193.0	Mm.168965	NM_008739	ENSMUSG00000021488	Nsd1	AI528500|KMT3B	nuclear receptor-binding SET-domain protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5582399-4	chr17	5582279	5582479	+	905.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	89779.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-91849262-4	chr12	91849141	91849341	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011344)	promoter-TSS (NM_011344)	-84.0	NM_011344	20338.0	Mm.250605	NM_011344	ENSMUSG00000020964	Sel1l	AW493766|Sel1h|mKIAA4137	sel-1 suppressor of lin-12-like (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55815546-4	chr14	55815453	55815653	+	994.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR17|LTR|ERVK	-9242.0	NM_001168346	73181.0	Mm.27908	NM_023699	ENSMUSG00000023411	Nfatc4	3110041H08Rik|AW107667|AW546455|Nfat3	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-62760115-10	chr14	62760039	62760239	+	962.966675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045503)	promoter-TSS (NR_045503)	-362.0	NR_045503	71000.0	Mm.399410	NR_045503	ENSMUSG00000097775	4931440J10Rik	-	RIKEN cDNA 4931440J10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-98589101-4	chr13	98589006	98589206	+	946.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	48304.0	NM_026685	68344.0	Mm.28766	NM_026685	ENSMUSG00000046082	Tmem174	0610009B10Rik|AA986094	transmembrane protein 174	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56257572-3	chr17	56257450	56257650	+	991.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010192, exon 1 of 1)	exon (NM_010192, exon 1 of 1)	757.0	NM_010192	14154.0	Mm.290813	NM_010192	ENSMUSG00000043683	Fem1a	AW611390|Fem1aa	feminization 1 homolog a (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167888630-2	chr2	167888530	167888730	+	594.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43697.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-32528436-2	chr17	32528336	32528536	+	674.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001101445, intron 12 of 12)	intron (NM_001101445, intron 12 of 12)	-8121.0	NM_001356302	70101.0	Mm.30504	NM_024442	ENSMUSG00000048440	Cyp4f16	2310021J05Rik|AI746515	cytochrome P450, family 4, subfamily f, polypeptide 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-62550014-4	chr11	62549925	62550125	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1146.0	NM_011664	22187.0	Mm.371592	NM_011664	ENSMUSG00000019505	Ubb	AL033289|Rps27a|Uba52|Ubb2|Ubc	ubiquitin B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-113640455-2	chr5	113640355	113640555	+	883.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359060, intron 2 of 4)	intron (NM_001359060, intron 2 of 4)	3148.0	NM_001359060	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106796852-4	chr11	106796756	106796956	+	908.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166685, intron 4 of 18)	ID_B1|SINE|B4	7604.0	NM_001166685	320162.0	Mm.30524	NM_177088	ENSMUSG00000018372	Cep95	4732496G21Rik|AI118346|AI448335|Ccdc45|D330027A14Rik|F630025I20Rik	centrosomal protein 95	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-63133388-3	chr9	63133270	63133470	+	871.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	U6|snRNA|snRNA	13610.0	NM_172446	207667.0	Mm.36349	NM_172446	ENSMUSG00000022245	Skor1	AV273001|C230094B15Rik|Corl1|Lbxcor1	SKI family transcriptional corepressor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-47621203-4	chr6	47621097	47621297	+	970.69165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26167.0	NM_007971	14056.0	Mm.246688	NM_007971	ENSMUSG00000029687	Ezh2	Enx-1|Enx1h|KMT6|mKIAA4065	enhancer of zeste 2 polycomb repressive complex 2 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81417144-4	chr15	81417032	81417232	+	908.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177310, intron 2 of 8)	ERVB7_2B-LTR_MM|LTR|ERVK	-8859.0	NM_021317	57755.0	Mm.440590	NM_021317	ENSMUSG00000047108	Dnajb7	4933424H20Rik|Dj5|mDj5	DnaJ heat shock protein family (Hsp40) member B7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-105704818-2	chr5	105704671	105704871	+	696.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178701, intron 1 of 2)	intron (NM_178701, intron 1 of 2)	3961.0	NM_178701	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	-0.182534527491087	-1.00895016391444	-1.0218572941639	-1.02617529563146	-1.02981053641889	-1.006153134946	-1.01893540279166	-1.02572713344884	-3.09936526392938	0.343406696059999	1
Merged-chr19-5663180-2	chr19	5663080	5663280	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164481, intron 1 of 17)	intron (NM_001164481, intron 1 of 17)	527.0	NM_001164482	20469.0	Mm.3072	NM_011379	ENSMUSG00000056917	Sipa1	Spa1	signal-induced proliferation associated gene 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-57439713-4	chr9	57439608	57439808	+	926.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357913)	promoter-TSS (NM_001357913)	28.0	NM_001357913	66812.0	Mm.250508	NM_176831	ENSMUSG00000063849	Ppcdc	1810057I13Rik|8430432M10Rik	phosphopantothenoylcysteine decarboxylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-56860422-3	chr6	56860319	56860519	+	587.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012056, intron 5 of 9)	intron (NM_012056, intron 5 of 9)	28360.0	NM_012056	27055.0	Mm.20943	NM_012056	ENSMUSG00000029781	Fkbp9	1810014L23|AW549641|FKBP-63|FKBP-9|FKBP60|FKBP63|FKBP65RS	FK506 binding protein 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99394305-4	chr15	99394254	99394454	+	874.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001171036, intron 2 of 10)	intron (NM_001171036, intron 2 of 10)	1135.0	NM_001171035	110213.0	Mm.16769	NM_026669	ENSMUSG00000023010	Tmbim6	5031406P05Rik|Bi1|Tegt	transmembrane BAX inhibitor motif containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-16900965-4	chr12	16900862	16901062	+	985.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009072, intron 1 of 32)	intron (NM_009072, intron 1 of 32)	5984.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118922153-4	chr9	118922069	118922269	+	801.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4367.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-7483281-4	chr19	7483190	7483390	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271487)	promoter-TSS (NM_001271487)	1.0	NM_001271486	20168.0	Mm.246990	NM_053076	ENSMUSG00000024758	Rtn3	RTN3-A1	reticulon 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-70408042-4	chr16	70407961	70408161	+	907.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028803, intron 3 of 15)	intron (NM_028803, intron 3 of 15)	94112.0	NM_028803	74185.0	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	3.37002763742708	2.84643896893111	4.25483303711413	3.0658474904944	3.74913359074902	4.78827684610437	4.11756306688795	4.48219589783895	1.14857160459182	0.0278305626596049	0.225195509290189
Merged-chr7-101821776-4	chr7	101821661	101821861	+	890.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001122739)	TTS (NM_001122739)	3448.0	NM_008887	11859.0	Mm.5028	NM_008887	ENSMUSG00000007946	Phox2a	Arix|Phox2|Pmx2|Pmx2a|Px2a	paired-like homeobox 2a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-89428767-2	chr15	89428667	89428867	+	850.333374	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_004843, exon 3 of 27)	non-coding (NR_004843, exon 3 of 27)	1160.0	NR_037154	12651.0	Mm.485045	NM_007692	ENSMUSG00000022617	Chkb	Chetk|Chkl|Ck|Ck/Ek|Ck/Ek-beta|Ckb|Ckekb|Ek	choline kinase beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-41141290-2	chr9	41141184	41141384	+	572.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_176860, intron 1 of 13)	(CA)n|Simple_repeat|Simple_repeat	16778.0	NM_176860	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	1.55299111003755	1.60403261330124	0.957036820610436	1.07994807558722	1.03764133356874	0.7945655114476	1.25309498342194	0.777878290528409	-1.73748196603261	0.220987686788697	0.712117798468663
Merged-chr7-127116380-2	chr7	127116280	127116480	+	594.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133686, intron 1 of 3)	MIRc|SINE|MIR	5649.0	NM_133686	67375.0	Mm.26928	NM_133686	ENSMUSG00000030674	Qprt	2410027J01Rik|AI647766|QPRTase	quinolinate phosphoribosyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-109845107-4	chr5	109844989	109845189	+	964.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10947.0	NR_027964	667213.0	Mm.454429	NR_027964	ENSMUSG00000105044	Gm10416	EG667213	zinc finger protein pseudogene	pseudo	3.91406014698535	4.0846754481918	2.94452250136803	4.19583476105799	3.44684112333705	3.31992951028415	3.09343952768155	2.73702383828875	-1.04959667631834	0.0622001127056108	0.370267191573337
Merged-chr2-11394844-4	chr2	11394749	11394949	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040615, intron 1 of 2)	intron (NR_040615, intron 1 of 2)	3651.0	NR_040615	77543.0	Mm.490670	NR_040615	ENSMUSG00000102674	8030442B05Rik	-	RIKEN cDNA 8030442B05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117116488-2	chr11	117116388	117116588	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166507, intron 1 of 16)	intron (NM_001166507, intron 1 of 16)	1316.0	NM_001166506	74136.0	Mm.272312	NM_028777	ENSMUSG00000020823	Sec14l1	1200017E04Rik|2810012L19Rik|Naa-35	SEC14-like lipid binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-92439648-2	chr5	92439548	92439748	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-4449.0	NM_183392	269113.0	Mm.275289	NM_183392	ENSMUSG00000034826	Nup54	3110079L04Rik|54kDa	nucleoporin 54	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-43632764-4	chr11	43632646	43632846	+	952.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31184.0	NM_008375	16204.0	Mm.142716	NM_008375	ENSMUSG00000020405	Fabp6	GT|I-15P|I-BABP|ILBP|ILBP3|Illbp	fatty acid binding protein 6, ileal (gastrotropin)	protein-coding	4.68370357186799	2.68271731875925	4.02301903941552	2.27007124120958	4.94693644115337	5.4159781877847	3.98403618954899	4.52113060002856	1.33838501440069	0.0205995673525524	0.182661422105075
Merged-chr10-99269900-3	chr10	99269795	99269995	+	896.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6664.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-84442865-2	chr10	84442765	84442965	+	608.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2394.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-38425150-3	chr18	38425052	38425252	+	594.027771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355749, intron 1 of 7)	intron (NM_001355749, intron 1 of 7)	6245.0	NM_001355749	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81315117-2	chr10	81315017	81315217	+	904.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008844, exon 16 of 18)	exon (NM_008844, exon 16 of 18)	-5986.0	NM_027381	70312.0	Mm.87628	NM_027381	ENSMUSG00000034889	Cactin	2510012J08Rik	cactin, spliceosome C complex subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-151011175-3	chr1	151011080	151011280	+	801.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17745.0	NM_001024720	545370.0	Mm.379425	NM_001024720	ENSMUSG00000066842	Hmcn1	EG545370|FIBL-6|Gm201	hemicentin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-76267021-2	chr12	76266921	76267121	+	745.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_138745, intron 1 of 27)	intron (NM_138745, intron 1 of 27)	11789.0	NM_138745	108156.0	Mm.29584	NM_138745	ENSMUSG00000021048	Mthfd1	Dcs|E430024A07Rik|Mthfd	methylenetetrahydrofolate dehydrogenase (NADP+ dependent), methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-88068301-9	chr11	88068144	88068344	+	952.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016686)	promoter-TSS (NM_016686)	-35.0	NM_016686	22344.0	Mm.46628	NM_016686	ENSMUSG00000018377	Vezf1	AI848691|AW046909|db1	vascular endothelial zinc finger 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-46448063-7	chr11	46447917	46448117	+	913.957153	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6914.0	NM_134250	171285.0	Mm.72168	NM_134250	ENSMUSG00000020399	Havcr2	TIM-3|Tim3|Timd3	hepatitis A virus cellular receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-51984442-4	chr14	51984336	51984536	+	962.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198249)	promoter-TSS (NM_198249)	-397.0	NM_001145921	268739.0	Mm.9239	NM_198249	ENSMUSG00000004562	Arhgef40	E130112L23Rik|Gm669|Solo	Rho guanine nucleotide exchange factor (GEF) 40	protein-coding	1.34217306721417	1.94734122984923	1.01735405204598	1.42358271545206	1.45754608251649	0.823576534797917	0.809193188674487	1.16414104990382	-1.46473828710003	0.27561646074199	0.77982362793126
Merged-chr17-36992464-4	chr17	36992358	36992558	+	967.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER34-int|LTR|ERV1	-2954.0	NM_001115075	240095.0	Mm.246609	NM_001115075	ENSMUSG00000024459	H2-M5	CRW2|D130003B22Rik|H-2M5	histocompatibility 2, M region locus 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-85841058-5	chr1	85840959	85841159	+	833.299988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355046, intron 5 of 9)	ID4|SINE|ID	47042.0	NM_001355047	12283.0	Mm.26135	NM_133781	ENSMUSG00000036707	Cab39	AA408805|AA960512|C78372|MO25|MO25alpha	calcium binding protein 39	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-54908845-4	chr14	54908749	54908949	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001360406, exon 5 of 10)	exon (NM_001360406, exon 5 of 10)	4283.0	NM_001360406	59049.0	Mm.27435	NM_021551	ENSMUSG00000022199	Slc22a17	1700094C23Rik|24p3R|AU041908|AW555662|BOIT|Boct	solute carrier family 22 (organic cation transporter), member 17	protein-coding	5.18850206537749	5.97031738227757	5.50556389885366	5.25589892273103	5.27848404693821	6.07195610123633	5.72651061930422	5.27951362300178	0.129604090169424	0.66615286822964	0.992515300319318
Merged-chr2-29678171-2	chr2	29678071	29678271	+	574.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_054050, intron 1 of 23)	PB1D9|SINE|Alu	58451.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6066501-2	chr19	6066401	6066601	+	789.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_028454, exon 4 of 10)	exon (NM_028454, exon 4 of 10)	1349.0	NM_028454	73166.0	Mm.489613	NM_028454	ENSMUSG00000024799	Tm7sf2	3110041O18Rik|ANG1|C14SR|Dhcr14	transmembrane 7 superfamily member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-95810610-4	chr16	95810512	95810712	+	958.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	88101.0	NR_040485	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-177685126-2	chr1	177685026	177685226	+	856.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42183.0	NR_037994	75589.0	Mm.86666	NR_037994	ENSMUSG00000101746	2310043L19Rik	-	RIKEN cDNA 2310043L19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-26263907-2	chr3	26263807	26264007	+	555.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_138666, intron 1 of 7)	(GA)n|Simple_repeat|Simple_repeat	68002.0	NM_138666	192167.0	Mm.316080	NM_138666	ENSMUSG00000063887	Nlgn1	6330415N05Rik|BB179718|NL1|Nlg1|mKIAA1070	neuroligin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21138500-2	chr9	21138400	21138600	+	659.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_016742)	TTS (NM_016742)	-7225.0	NM_001205312	54721.0	Mm.20249	NM_018793	ENSMUSG00000032175	Tyk2	JTK1	tyrosine kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-24647357-4	chr6	24647251	24647451	+	691.799988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028459, intron 1 of 10)	intron (NM_028459, intron 1 of 10)	17644.0	NM_001167745	73178.0	Mm.1574	NM_028459	ENSMUSG00000029684	Wasl	2900021I12Rik|3110031I02Rik|N-WASP	Wiskott-Aldrich syndrome-like (human)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-69344386-4	chr18	69344289	69344489	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013685)	promoter-TSS (NM_013685)	-103.0	NM_013685	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	4.82066170673867	4.75588264072265	5.5795068410124	4.11754975269664	4.59128789101415	4.20673459460523	3.18688580963065	4.19849624136218	-0.972172569973684	0.0310912396038291	0.243388011809531
Merged-chr16-93884403-3	chr16	93884309	93884509	+	866.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028083, intron 1 of 13)	CpG	508.0	NM_028083	110749.0	Mm.274222	NM_028083	ENSMUSG00000022945	Chaf1b	2600017H24Rik|C76145|CAF-I p60|CAF-Ip60|CAF1|CAF1A|CAF1P60|MPHOSPH7	chromatin assembly factor 1, subunit B (p60)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-116109527-1	chr3	116109427	116109627	+	860.5	f0_balb.idr	TTS (NM_011693)	TTS (NM_011693)	20161.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	2.40000514547086	1.01913358137383	0.980653842509632	0.705830802158258	2.09316617228589	1.43853722935687	0.727623220427008	0.708844167960247	-0.298710045520995	0.835708049412188	0.998431161219273
Merged-chr12-71808248-4	chr12	71808128	71808328	+	814.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22840.0	NM_026102	208846.0	Mm.87417	NM_026102	ENSMUSG00000034574	Daam1	-	dishevelled associated activator of morphogenesis 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80077181-2	chr7	80077081	80077281	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175433, intron 1 of 4)	intron (NM_175433, intron 1 of 4)	-1924.0	NR_045695	100859962.0	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-60589602-4	chr3	60589482	60589682	+	976.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310514, intron 2 of 8)	intron (NM_001310514, intron 2 of 8)	88403.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-75926274-2	chr15	75926174	75926374	+	751.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357005, intron 6 of 10)	intron (NM_001357005, intron 6 of 10)	3456.0	NM_031201	22122.0	Mm.22596	NM_031201	ENSMUSG00000022570	Tsta3	AI256181|FX|Tstap35b	tissue specific transplantation antigen P35B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70000551-4	chr11	70000431	70000631	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007888)	promoter-TSS (NM_007888)	-95.0	NM_007888	13543.0	Mm.5114	NM_007888	ENSMUSG00000020888	Dvl2	-	dishevelled segment polarity protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152618073-4	chr1	152617960	152618160	+	860.4833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346119, intron 2 of 17)	intron (NM_001346119, intron 2 of 17)	7157.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-112867500-4	chr12	112867393	112867593	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6577.0	NM_019925	56696.0	Mm.20455	NM_019925	ENSMUSG00000021298	Gpr132	G2a	G protein-coupled receptor 132	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-27067348-2	chr3	27067248	27067448	+	947.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC4a|LINE|L1	86506.0	NM_007900	13605.0	Mm.261453	NM_007900	ENSMUSG00000027699	Ect2	AI528536	ect2 oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132943225-2	chr4	132943125	132943325	+	928.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20674.0	NM_001163792	230789.0	Mm.11473	NM_145553	ENSMUSG00000028878	Fam76a	-	family with sequence similarity 76, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-60832148-3	chr10	60832036	60832236	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359273)	promoter-TSS (NM_001359273)	-555.0	NM_001359273	107449.0	Mm.290433	NM_029770	ENSMUSG00000020099	Unc5b	6330415E02Rik|A630020F16|D10Bwg0792e|Unc5h2	unc-5 netrin receptor B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-7996303-2	chr5	7996203	7996403	+	753.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	35831.0	NM_054098	117167.0	Mm.31403	NM_054098	ENSMUSG00000012428	Steap4	1110021O17Rik|AI481214|Tiarp|Tnfaip9	STEAP family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-96594109-4	chr15	96594010	96594210	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166456, intron 4 of 15)	intron (NM_001166456, intron 4 of 15)	47852.0	NM_134086	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-75825896-2	chr13	75825796	75825996	+	840.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR78B|LTR|ERV1	-13989.0	NM_001360151	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-81348453-4	chr7	81348342	81348542	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357107, intron 9 of 9)	intron (NM_001357107, intron 9 of 9)	-3208.0	NM_009092	20068.0	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-142902743-5	chr5	142902510	142902710	+	790.320007	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_007393)	TTS (NM_007393)	4144.0	NM_007393	11461.0	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-144240604-3	chr1	144240501	144240701	+	813.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	8503.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-75280603-3	chr3	75280511	75280711	+	881.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10533.0	NM_026460	67931.0	Mm.259446	NM_026460	ENSMUSG00000034139	Serpini2	Spi14	serine (or cysteine) peptidase inhibitor, clade I, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70439038-2	chr8	70438938	70439138	+	552.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001004062, intron 1 of 13)	intron (NM_001004062, intron 1 of 13)	535.0	NM_001004062	382056.0	Mm.227767	NM_001004062	ENSMUSG00000003575	Crtc1	AI413414|Mect1|R74955|TORC1|mKIAA0616	CREB regulated transcription coactivator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-20575292-1	chr13	20575192	20575392	+	611.0	f1_balb.idr	intron (NM_198093, intron 3 of 6)	intron (NM_198093, intron 3 of 6)	102302.0	NM_198093	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	-0.219020869227416	-0.200679660066107	0.52688379175807	-0.211271866481916	-0.217863126672337	-0.199341883462125	0.639399174187781	-0.210460944577191	0.305848368790414	0.902083538611979	1
Merged-chr8-120106717-2	chr8	120106617	120106817	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5245.0	NM_133967	102193.0	Mm.240076	NM_133967	ENSMUSG00000031823	Zdhhc7	AL024087|Gramp2	zinc finger, DHHC domain containing 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-152404983-3	chr3	152404888	152405088	+	703.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001287139, intron 1 of 13)	intron (NM_001287139, intron 1 of 13)	8304.0	NM_001287139	108946.0	Mm.379292	NM_198416	ENSMUSG00000039068	Zzz3	3110065C23Rik|6430567E01Rik|AA408566|AI481057|AW556059|R75514	zinc finger, ZZ domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135935476-2	chr5	135935385	135935585	+	792.5	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_018871)	promoter-TSS (NM_018871)	-844.0	NM_018871	22628.0	Mm.233813	NM_018871	ENSMUSG00000051391	Ywhag	14-3-3gamma|D7Bwg1348e	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide	protein-coding	1.72666126425683	1.17515786273761	2.10443792221542	2.30930512735637	2.04397034813438	1.18017762790973	2.01033743733969	1.82785169676947	-0.255403168079703	0.817465318016193	0.998431161219273
Merged-chr16-76763087-4	chr16	76762975	76763175	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155453, intron 1 of 3)	intron (NR_155453, intron 1 of 3)	16017.0	NR_155453	102632814.0		NR_155453	ENSMUSG00000109333	Gm30790	Gm45028	predicted gene, 30790	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167715233-4	chr2	167715120	167715320	+	950.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24043.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-84015521-2	chr18	84015421	84015621	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081300, exon 2 of 2)	exon (NM_001081300, exon 2 of 2)	71041.0	NM_001081300	110796.0	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-76529887-4	chr11	76529782	76529982	+	975.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198894, intron 1 of 22)	intron (NM_198894, intron 1 of 22)	-20463.0	NM_198018	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-72379687-4	chr4	72379597	72379797	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	178453.0	NR_027923	68285.0	Mm.37541	NR_027923		C630043F03Rik	AI851307	RIKEN cDNA C630043F03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-82903679-1	chr10	82903579	82903779	+	545.0	f1_c57bl6.idr	Intergenic	Intergenic	37053.0	NM_025499	66341.0	Mm.443284	NM_025499	ENSMUSG00000109864	Eid3	1700027M21Rik|NS4EB	EP300 interacting inhibitor of differentiation 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-121065674-2	chr4	121065574	121065774	+	556.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172700, intron 9 of 9)	intron (NM_172700, intron 9 of 9)	26108.0	NM_007741	12840.0	Mm.269384	NM_007741	ENSMUSG00000028626	Col9a2	AI427499|Col9a-2	collagen, type IX, alpha 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-110409970-2	chr11	110409870	110410070	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356352, intron 1 of 11)	intron (NM_001356352, intron 1 of 11)	10868.0	NM_001356353	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-10026398-3	chr8	10026295	10026495	+	736.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033622, intron 4 of 6)	L1M4|LINE|L1	19762.0	NM_033622	24099.0	Mm.28835	NM_033622	ENSMUSG00000031497	Tnfsf13b	BAFF|BLyS|D8Ertd387e|TALL-1|TALL1|THANK|TNFSF20|Tnlg7a|zTNF4	tumor necrosis factor (ligand) superfamily, member 13b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24583858-3	chr17	24583770	24583970	+	811.894409	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013630, intron 26 of 45)	Lx5c|LINE|L1	33920.0	NM_013630	18763.0	Mm.30435	NM_013630	ENSMUSG00000032855	Pkd1	PC1|mFLJ00285	polycystin 1, transient receptor poteintial channel interacting	protein-coding	-0.384038774394221	-0.190356391749481	-0.209847322186171	-0.379394314410551	-0.127906161917999	-0.372095368640954	0.171879509287521	-0.378903875539623	1.49805895138132	0.534029929296559	1
Merged-chr8-90977062-4	chr8	90976954	90977154	+	961.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001310530, exon 4 of 38)	exon (NM_001310530, exon 4 of 38)	44805.0	NM_001310530	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	3.85707600686712	3.68061157108092	3.47052552440904	3.99620076139338	3.88699399773664	3.87047897735348	3.49762193104525	3.63523341779999	-0.0527483790332208	0.91276600774933	0.998431161219273
Merged-chr2-13782290-2	chr2	13782190	13782390	+	939.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145838, intron 2 of 7)	intron (NM_145838, intron 2 of 7)	11230.0	NM_145838	241230.0	Mm.330004	NM_145838	ENSMUSG00000003418	St8sia6	1700007J08Rik|AI314453|AI875066|ST8SiaVI|Siat8f	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-73462546-3	chr2	73462457	73462657	+	973.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	-8668.0	NM_001289722	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-92903816-4	chr7	92903728	92903928	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028243, intron 2 of 8)	intron (NM_028243, intron 2 of 8)	28575.0	NM_028243	72461.0	Mm.389969	NM_028243	ENSMUSG00000061119	Prcp	2510048K03Rik|2610104A14Rik|AI451719|HUMPCP|PCP	prolylcarboxypeptidase (angiotensinase C)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-59548998-4	chr9	59548891	59549091	+	886.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010421, intron 1 of 13)	intron (NM_010421, intron 1 of 13)	9451.0	NM_010421	15211.0	Mm.2284	NM_010421	ENSMUSG00000025232	Hexa	Hex-1	hexosaminidase A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-137919108-3	chr3	137919013	137919213	+	965.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019920, intron 2 of 6)	intron (NM_019920, intron 2 of 6)	558.0	NM_019920	56692.0	Mm.331392	NM_019920	ENSMUSG00000091512	Lamtor3	AW556229|Map2k1ip1|Mapbp|Mapksp1|Mp1	late endosomal/lysosomal adaptor, MAPK and MTOR activator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-83443910-2	chr9	83443810	83444010	+	987.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_102437, intron 1 of 2)	RMER1B|Other|Other	-2783.0	NM_029434	75782.0	Mm.199698	NM_027448	ENSMUSG00000032258	Lca5	4930431B11Rik|5730406O13Rik|AV274874|ORF64	Leber congenital amaurosis 5 (human)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-90051889-4	chr3	90051791	90051991	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027500)	promoter-TSS (NM_027500)	255.0	NM_001287087	99650.0	Mm.300083	NM_025762	ENSMUSG00000027942	4933434E20Rik	5730552F22Rik|AI462154|NICE-3|NS5ATP4	RIKEN cDNA 4933434E20 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-9939031-4	chr19	9938897	9939097	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39464.0	NM_016692	16319.0	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-98190155-2	chr7	98190055	98190255	+	664.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	9320.0	NM_001081167	272411.0	Mm.98333	NM_001081167	ENSMUSG00000074004	B3gnt6	BC039789|Core-3|Core3	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6 (core 3 synthase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-63931008-1	chr7	63930908	63931108	+	789.0	f1_balb.idr	intron (NM_021366, intron 1 of 1)	intron (NM_021366, intron 1 of 1)	7907.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-95802498-2	chr15	95802398	95802598	+	776.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 1 of 19)	intron (NM_175344, intron 1 of 19)	11655.0	NM_001253813	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-53247560-3	chr9	53247448	53247648	+	922.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029936, intron 1 of 17)	intron (NM_029936, intron 1 of 17)	564.0	NM_029936	77591.0	Mm.133560	NM_029936	ENSMUSG00000053289	Ddx10	4632415A01Rik|AI646054	DEAD (Asp-Glu-Ala-Asp) box polypeptide 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-73324200-4	chr11	73324122	73324322	+	998.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023113, intron 1 of 5)	intron (NM_023113, intron 1 of 5)	415.0	NM_023113	11484.0	Mm.293574	NM_023113	ENSMUSG00000020774	Aspa	Acy-2|Acy2|nur7	aspartoacylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-5491223-4	chr11	5491114	5491314	+	888.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29427.0	NM_013842	22433.0	Mm.469937	NM_013842	ENSMUSG00000020484	Xbp1	D11Ertd39e|TREB-5|TREB5|XBP-1	X-box binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-29008383-3	chr7	29008300	29008500	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009109, exon 101 of 106)	exon (NM_009109, exon 101 of 106)	25546.0	NM_008279	26411.0	Mm.148278	NM_008279	ENSMUSG00000037337	Map4k1	Hpk1|mHPK1	mitogen-activated protein kinase kinase kinase kinase 1	protein-coding	1.4042833465737	2.1295983676179	1.25197502240747	2.12591318446596	1.90567828241851	2.96775153977767	2.53951131773892	2.36122287275898	1.71008942372249	0.0749733919133971	0.415168041312433
Merged-chr7-130898509-2	chr7	130898409	130898609	+	765.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133942, intron 4 of 9)	B2_Mm2|SINE|B2	-9759.0	NR_106028	102466219.0		NR_106028	ENSMUSG00000104914	Mir7061	mmu-mir-7061	microRNA 7061	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-145866164-4	chr6	145866089	145866289	+	897.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024469)	promoter-TSS (NM_024469)	-769.0	NM_001271768	79362.0	Mm.154529	NM_024469	ENSMUSG00000030256	Bhlhe41	6430520M22Rik|Bhlhb2l|Bhlhb3|DEC2|Sharp1	basic helix-loop-helix family, member e41	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-96878692-3	chr11	96878562	96878762	+	838.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	28269.0	NR_029562	387170.0		NR_029562	ENSMUSG00000065515	Mir152	Mirn152|mir-152|mmu-mir-152	microRNA 152	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-119107855-2	chr9	119107755	119107955	+	563.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177117, intron 2 of 36)	intron (NM_177117, intron 2 of 36)	5377.0	NM_177117	320256.0	Mm.110648	NM_177117	ENSMUSG00000038060	Dlec1	D630005C06Rik	deleted in lung and esophageal cancer 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-15536190-7	chr17	15536207	15536407	+	739.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9006.0	NM_008799	18567.0	Mm.323	NM_008799	ENSMUSG00000014771	Pdcd2	AI528543|Pcd2|RP-8	programmed cell death 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-36608034-4	chr15	36607949	36608149	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008774, intron 1 of 14)	intron (NM_008774, intron 1 of 14)	924.0	NM_008774	18458.0	Mm.371570	NM_008774	ENSMUSG00000022283	Pabpc1	PABP|Pabp1|PabpI|Pabpl1|ePAB	poly(A) binding protein, cytoplasmic 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-76527741-4	chr12	76527639	76527839	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5473.0	NR_039597	100628604.0		NR_039597	ENSMUSG00000092738	Mir5135	mir-5135|mmu-mir-5135|mu-mir-5135	microRNA 5135	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90576434-4	chr2	90576310	90576510	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	4237.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125444066-2	chr6	125443990	125444190	+	653.333374	f0_balb.idr|f1_c57bl6.idr	Intergenic	ID4|SINE|ID	50670.0	NM_007657	12527.0	Mm.210676	NM_007657	ENSMUSG00000030342	Cd9	Tspan29	CD9 antigen	protein-coding	2.05304440690742	3.16564710803192	1.25477087288707	2.03582213813681	1.79289766190556	2.97069573908161	1.5394698754061	2.5197550505282	0.0224170424740103	0.981908289888993	0.998431161219273
Merged-chr2-154866909-2	chr2	154866809	154867009	+	684.166626	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001139511, exon 8 of 8)	3' UTR (NM_001139511, exon 8 of 8)	25997.0	NM_026030	67204.0	Mm.377134	NM_026030	ENSMUSG00000074656	Eif2s2	2810026E11Rik|38kDa|AA408636|AA571381|AA986487|AW822225|D2Ertd303e|EIF2|EIF2B	eukaryotic translation initiation factor 2, subunit 2 (beta)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135987254-4	chr4	135987158	135987358	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025411)	promoter-TSS (NM_025411)	-14.0	NM_025411	66193.0	Mm.29131	NM_025411	ENSMUSG00000028669	Pithd1	1110049F12Rik|AA408179|Trp26	PITH (C-terminal proteasome-interacting domain of thioredoxin-like) domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-41606965-4	chr13	41606842	41607042	+	981.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163572, intron 1 of 2)	intron (NM_001163572, intron 1 of 2)	726.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-92861818-4	chr16	92861712	92861912	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-35738.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-38233166-1	chr18	38233066	38233266	+	572.0	f0_c57.idr	Intergenic	Intergenic	17032.0	NR_015475	73516.0	Mm.48776	NR_015475	ENSMUSG00000097080	1700086O06Rik	-	RIKEN cDNA 1700086O06 gene	ncRNA	0.243192212921368	0.846952426994282	0.263570384885744	0.255990332020418	0.423224059468934	1.41486313092651	0.265720310914256	0.765847175040929	1.9892933884697	0.284514406551331	1
Merged-chr17-26676446-4	chr17	26676407	26676607	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_025272, exon 1 of 4)	exon (NM_025272, exon 1 of 4)	111.0	NM_025272	11974.0	Mm.22602	NM_025272	ENSMUSG00000015575	Atp6v0e	Atp6k|Atp6v0e1|M9.2	ATPase, H+ transporting, lysosomal V0 subunit E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-136324858-2	chr3	136324758	136324958	+	907.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033350, intron 1 of 16)	L1_Mus1|LINE|L1	1208.0	NM_001310749	242248.0	Mm.30832	NM_001033350	ENSMUSG00000037922	Bank1	A530094C12Rik|AI451642|AVIEF|BANK	B cell scaffold protein with ankyrin repeats 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-98263005-2	chr12	98262905	98263105	+	631.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-3546.0	NM_008079	14420.0	Mm.5120	NM_008079	ENSMUSG00000021003	Galc	2310068B06Rik|A930008M05Rik|AW212969|AW413532|Gacy|twi|twitcher	galactosylceramidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-47711250-2	chr9	47711087	47711287	+	702.5	f0_c57.idr|f1_balb.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	107021.0	NR_046048	100038460.0	Mm.447649	NR_046048		Gm10677	-	predicted gene 10677	ncRNA	0.582942971441098	1.92413165508487	0.615889322821062	1.15406630166164	1.32432911178843	1.54137081558924	0.619317208361628	0.605875633971547	-0.398952688054428	0.802903555424994	0.998431161219273
Merged-chr1-165769262-4	chr1	165769147	165769347	+	920.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149310, intron 2 of 4)	intron (NR_149310, intron 2 of 4)	5489.0	NM_011804	433375.0	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-21943614-4	chr19	21943527	21943727	+	827.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	165287.0	NM_031997	83921.0	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	0.303355592206901	-0.336090889331572	-0.340608087488138	-0.344096062964708	-0.349029490642576	-0.335073198401798	-0.339611437467807	0.305996310184217	0.00845010712153481	0.997459553028012	1
Merged-chr15-99034863-2	chr15	99034763	99034963	+	748.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_009448, intron 3 of 3)	intron (NM_009448, intron 3 of 3)	4972.0	NM_009448	22146.0	Mm.88212	NM_009448	ENSMUSG00000043091	Tuba1c	M[a]6|Tuba6	tubulin, alpha 1C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-32194494-4	chr5	32194389	32194589	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER121|DNA|TcMar?	-38219.0	NM_030072	665270.0	Mm.160067	NM_030072	ENSMUSG00000029134	Plb1	4632413E21Rik|4930433E17Rik|4930539A06Rik|BC033606	phospholipase B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-41639057-1	chr15	41638957	41639157	+	612.333313	f0_balb.idr	intron (NR_152565, intron 2 of 17)	intron (NR_152565, intron 2 of 17)	-149938.0	NM_001358976	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166709426-2	chr2	166709326	166709526	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	4406.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46078645-3	chr8	46078531	46078731	+	825.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207213, intron 5 of 17)	intron (NM_207213, intron 5 of 17)	45515.0	NM_207213	102141.0	Mm.267258	NM_207213	ENSMUSG00000038291	Snx25	AI661919|Gm1699|Gm173|Sbbi31	sorting nexin 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-101733008-4	chr2	101732903	101733103	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355625, intron 7 of 8)	MTEb|LTR|ERVL-MaLR	54583.0	NM_001303273	22034.0	Mm.292729	NM_009424	ENSMUSG00000027164	Traf6	2310003F17Rik|AI851288|C630032O20Rik	TNF receptor-associated factor 6	protein-coding	1.10902225356186	1.19902065695118	1.98111714085144	0.975243447549505	1.68481042535595	1.20557920619339	2.11986470922233	1.15104543899673	0.802777103511029	0.528951405308171	0.949464880269839
Merged-chr19-24984615-3	chr19	24984482	24984682	+	923.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14947.0	NM_028785	76088.0	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	-0.998708004169574	-1.23656917697027	-1.2467819647641	-1.2551710527351	-1.26296550373295	-1.23435602325169	-0.926385977887582	-1.25366940999922	0.276530546718458	0.935641945642945	1
Merged-chr3-107099761-4	chr3	107099678	107099878	+	783.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-1789.0	NM_008417	16490.0	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-108657582-3	chr12	108657498	108657698	+	791.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163396, intron 4 of 14)	intron (NM_001163396, intron 4 of 14)	-1022.0	NR_029771	723909.0		NR_029771	ENSMUSG00000065436	Mir342	Mirn342|mmu-mir-342	microRNA 342	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-34038967-2	chr11	34038867	34039067	+	618.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_155520, intron 4 of 4)	intron (NR_155520, intron 4 of 4)	-7961.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-92740696-4	chr7	92740598	92740798	+	777.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_015510)	TTS (NR_015510)	761.0	NR_015510	666737.0	Mm.473620	NR_015510	ENSMUSG00000074024	4632427E13Rik	AU015482	RIKEN cDNA 4632427E13 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31392053-8	chr14	31391949	31392149	+	941.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347585, intron 2 of 7)	ID_B1|SINE|B4	25628.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27743615-2	chr2	27743515	27743715	+	863.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290481, intron 4 of 9)	intron (NM_001290481, intron 4 of 9)	33032.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-82796294-4	chr1	82796186	82796386	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27830.0	NM_025453	66261.0	Mm.46325	NM_025453	ENSMUSG00000026149	Tm4sf20	1810018L02Rik	transmembrane 4 L six family member 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-66811059-2	chr10	66810959	66811159	+	547.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	109325.0	NR_138560	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-51955944-3	chr13	51955800	51956000	+	840.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	109225.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-62036954-2	chr15	62036854	62037054	+	973.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1032.0	NR_132747	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97311220-2	chr11	97311113	97311313	+	670.083374	f1_balb.idr|f1_c57bl6.idr	Intergenic	(GGGTG)n|Simple_repeat|Simple_repeat	-4503.0	NM_025927	67036.0	Mm.5381	NM_025927	ENSMUSG00000018882	Mrpl45	2600005P05Rik|AU043542|R75241	mitochondrial ribosomal protein L45	protein-coding	2.23040267317497	1.80051753577012	1.53709352269575	2.69007704933832	2.42284320766604	2.15585460209009	1.29314717999149	2.704120150991	0.232455814015271	0.813722756347802	0.998431161219273
Merged-chr11-70815915-3	chr11	70815760	70815960	+	872.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3299.0	NM_001045526	327957.0	Mm.164325	NM_001045526	ENSMUSG00000057135	Scimp	A430084P05Rik	SLP adaptor and CSK interacting membrane protein	protein-coding	1.09137657825076	1.94528843245665	1.37873884185333	1.82427153363409	1.74481780755027	2.50160828861254	1.89311844994954	2.06414258207789	1.37294924184489	0.194451172352704	0.674631641388253
Merged-chr4-135679584-3	chr4	135679494	135679694	+	939.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6863.0	NM_174851	242700.0	Mm.259623	NM_174851	ENSMUSG00000062157	Ifnlr1	CRF2-12|Il28ra	interferon lambda receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-27185114-4	chr5	27185012	27185212	+	936.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207282, intron 1 of 25)	intron (NM_207282, intron 1 of 25)	-76823.0	NM_001136060	13483.0	Mm.42078	NM_010075	ENSMUSG00000061576	Dpp6	B930011P16Rik|D5Buc3|D5Buc4|D5Buc5|DPP VI|Dpp-6|Gm1377|In(5)6H-p|Peplb|Rw	dipeptidylpeptidase 6	protein-coding	3.08140888703359	3.70784075779838	1.90444774288164	2.4467791506911	2.72268447847591	4.25797791688362	3.92578096293339	3.08865052200846	1.06303332258015	0.128299900765449	0.560332465185109
Merged-chr18-56427883-3	chr18	56427775	56427975	+	870.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360917, intron 1 of 13)	ORR1F|LTR|ERVL-MaLR	-4257.0	NM_026240	107022.0	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|Gramd2b|NS3TP2	GRAM domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-52119898-1	chr1	52119798	52119998	+	766.0	f0_balb.idr	intron (NM_001205313, intron 1 of 24)	intron (NM_001205313, intron 1 of 24)	276.0	NM_001205313	20846.0	Mm.277406	NM_009283	ENSMUSG00000026104	Stat1	2010005J02Rik|AA408197	signal transducer and activator of transcription 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-97665682-1	chr3	97665582	97665782	+	558.0	f0_balb.idr	intron (NM_182997, intron 5 of 7)	L1MB7|LINE|L1	7470.0	NM_182997	108097.0	Mm.31175	NM_182997	ENSMUSG00000038205	Prkab2	5730553K21Rik|AW049591|BB124140	protein kinase, AMP-activated, beta 2 non-catalytic subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-54494385-4	chr14	54494276	54494476	+	784.404175	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18276.0	NM_080726	140743.0	Mm.274727	NM_080726	ENSMUSG00000022176	Rem2	AW411893	rad and gem related GTP binding protein 2	protein-coding	3.10899212161363	3.66079273875857	3.93997950711531	3.83707362886016	3.73492311502017	3.07509246786245	3.09177755467964	3.10280982091287	-0.581856652788612	0.294439585832591	0.798191705447
Merged-chr17-47511272-4	chr17	47511163	47511363	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081635, intron 1 of 6)	intron (NM_001081635, intron 1 of 6)	6212.0	NM_001081635	12445.0	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-45277198-4	chr10	45277086	45277286	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12119.0	NM_024286	78977.0	Mm.24748	NM_024286	ENSMUSG00000019848	Popdc3	AA682104|Pop3	popeye domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-77436276-6	chr8	77436125	77436325	+	758.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030113, intron 3 of 22)	intron (NM_030113, intron 3 of 22)	-80831.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-94474430-4	chr11	94474329	94474529	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001112813)	promoter-TSS (NM_001112813)	-231.0	NM_001112813	12291.0	Mm.29585	NM_009783	ENSMUSG00000020866	Cacna1g	Cav3.1d|[a]1G|a1G|alpha-1G|mKIAA1123	calcium channel, voltage-dependent, T type, alpha 1G subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-24777271-4	chr16	24777148	24777348	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 8 of 12)	intron (NM_178665, intron 8 of 12)	55393.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-52146844-2	chr1	52146744	52146944	+	590.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205313, intron 15 of 24)	intron (NM_001205313, intron 15 of 24)	27222.0	NM_001205313	20846.0	Mm.277406	NM_009283	ENSMUSG00000026104	Stat1	2010005J02Rik|AA408197	signal transducer and activator of transcription 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28546307-1	chr7	28546207	28546407	+	818.0	f1_c57bl6.idr	exon (NM_001081115, exon 2 of 6)	exon (NM_001081115, exon 2 of 6)	947.0	NM_001081115	233038.0	Mm.224815	NM_001081115	ENSMUSG00000047586	Nccrp1	1190020J12Rik|Gm163|NCCRP-1	non-specific cytotoxic cell receptor protein 1 homolog (zebrafish)	protein-coding	-0.0913193941678772	-0.0735250086604899	0.803619762648638	-0.0838249713737969	0.197994964563692	-0.0722195907890319	-0.0780477676509309	0.3702263088457	-0.669390522768493	0.767331669872746	1
Merged-chr10-75859633-3	chr10	75859527	75859727	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010798, intron 2 of 2)	intron (NM_010798, intron 2 of 2)	623.0	NM_010798	17319.0	Mm.2326	NM_010798	ENSMUSG00000033307	Mif	GIF|Glif	macrophage migration inhibitory factor (glycosylation-inhibiting factor)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-29671296-2	chr2	29671196	29671396	+	613.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_054050, intron 1 of 23)	intron (NM_054050, intron 1 of 23)	51576.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-76354976-2	chr16	76354876	76355076	+	594.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_173440, intron 1 of 3)	Lx9|LINE|L1	18073.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-136174484-2	chr5	136174384	136174584	+	741.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-3828.0	NM_178751	269717.0	Mm.308396	NM_178751	ENSMUSG00000039747	Orai2	A730041O15Rik|Tmem142b	ORAI calcium release-activated calcium modulator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-20927983-2	chr10	20927883	20928083	+	603.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	-24564.0	NM_026203	52906.0	Mm.253280	NM_026203	ENSMUSG00000019986	Ahi1	1700015F03Rik|Ahi-1|D10Bwg0629e	Abelson helper integration site 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-13038146-4	chr7	13038026	13038226	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001243968)	promoter-TSS (NM_001243968)	-148.0	NM_145578	22192.0	Mm.196580	NM_145578	ENSMUSG00000005575	Ube2m	2510040H03Rik|UBC12|Ubc-rs2	ubiquitin-conjugating enzyme E2M	protein-coding	5.23638537249231	4.15381581554924	4.51298281905629	4.49186496700213	5.4223315920505	4.25963831039114	5.22725939210584	4.24784527541316	0.283807511728542	0.496225028687125	0.936771217641569
Merged-chr11-115742722-1	chr11	115742622	115742822	+	725.0	f1_c57bl6.idr	Intergenic	Intergenic	-22711.0	NM_028014	71947.0	Mm.23168	NM_028014	ENSMUSG00000020747	Tmem94	2310067B10Rik|Kiaa0195|mKIAA0195	transmembrane protein 94	protein-coding	0.507389055833121	0.264759293315786	0.258504573227508	0.414896030613159	0.961509101863533	0.266169243242097	0.714294835132414	0.556551948783581	2.04326976519356	0.270221206172477	1
Merged-chr11-11564491-3	chr11	11564383	11564583	+	667.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	63355.0	NM_001305143	102631730.0	Mm.159430	NM_001305143	ENSMUSG00000062511	4930512M02Rik	-	RIKEN cDNA 4930512M02 gene	protein-coding	-1.32440223303897	-1.29339468673833	-0.717877708899544	-1.31276353204239	-1.32392690786997	-1.29109028300231	-1.30162128075409	-1.31119997543009	-2.49510383040271	0.470258445164311	1
Merged-chr7-128688376-2	chr7	128688276	128688476	+	601.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346517)	promoter-TSS (NM_001346517)	-494.0	NM_001346517	101490.0	Mm.490344	NM_178641	ENSMUSG00000042105	Inpp5f	5830435P03Rik|AI115354|AW561896|SAC2|cI-27|hSAC2|mKIAA0966	inositol polyphosphate-5-phosphatase F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-33890788-4	chr17	33890701	33890901	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001195298)	promoter-TSS (NM_001195298)	-168.0	NM_001195298	100502766.0	Mm.335713	NM_001195298	ENSMUSG00000079553	Kifc1	100042970|Gm4137|HSET|KNSL2|Kifc5a|Knsl2a|Tctex-7|Tctex-7A|Tctex7|Tctex7a	kinesin family member C1	protein-coding	8.06418866134806	7.43993534437928	7.80478037919939	7.56940188835209	7.77449238050685	7.42200228208502	7.85103714171924	7.25062995808344	-0.15226188212974	0.386848376228029	0.876517644221684
Merged-chr1-86467767-2	chr1	86467667	86467867	+	792.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41438.0	NM_027966	71863.0	Mm.179627	NM_027966	ENSMUSG00000036574	Tex44	1700019O17Rik	testis expressed 44	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3651738-4	chr4	3651649	3651849	+	913.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-4757.0	NR_040643	70143.0	Mm.417835	NR_040643	ENSMUSG00000085394	2210414B05Rik	-	RIKEN cDNA 2210414B05 gene	ncRNA	2.48496525562477	2.0043944394816	1.33431631362993	2.0286260956237	2.06120584211503	2.1719470199693	2.34622899648258	2.63141281074198	0.689488844383542	0.458047414395313	0.919570891419578
Merged-chr2-4648424-2	chr2	4648324	4648524	+	604.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026045, intron 1 of 9)	intron (NM_026045, intron 1 of 9)	3711.0	NM_026045	67229.0	Mm.38529	NM_026045	ENSMUSG00000039449	Prpf18	2810441A10Rik	pre-mRNA processing factor 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-40564437-4	chr12	40564323	40564523	+	982.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	118370.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-189867653-3	chr1	189867553	189867753	+	674.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008976, intron 18 of 18)	intron (NM_008976, intron 18 of 18)	54638.0	NM_026796	226830.0	Mm.156895	NM_026796	ENSMUSG00000026603	Smyd2	1110020E07Rik|4930402C15|KMT3C|Zmynd14	SET and MYND domain containing 2	protein-coding	-0.864396307252582	-0.84957506141699	-0.854472504180853	-0.858164757719666	-0.863461036107386	-0.84836658588	-0.853425226377894	0.249185994851986	3.74302279536308	0.191681524434762	1
Merged-chr18-70568930-4	chr18	70568822	70569022	+	961.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001311071, exon 1 of 3)	exon (NM_001311071, exon 1 of 3)	630.0	NM_010773	17191.0	Mm.322	NM_010773	ENSMUSG00000024513	Mbd2	MBD2a	methyl-CpG binding domain protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55641178-2	chr19	55641078	55641278	+	713.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045318, exon 4 of 4)	non-coding (NR_045318, exon 4 of 4)	61026.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-12813667-3	chr10	12813570	12813770	+	708.366638	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011682, intron 1 of 73)	intron (NM_011682, intron 1 of 73)	48065.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	0.456741781522454	0.492385108031584	0.480923432735333	1.10169583209836	1.59597653744059	0.494941969863441	0.699800632022597	1.32046567126301	2.05747309112177	0.232815763001545	0.727930149661469
Merged-chr6-67036596-4	chr6	67036490	67036690	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040278)	promoter-TSS (NR_040278)	-9.0	NR_040278	320172.0	Mm.449039	NR_040278	ENSMUSG00000087231	E230016M11Rik	-	RIKEN cDNA E230016M11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99099222-4	chr15	99099153	99099353	+	676.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_176835)	promoter-TSS (NM_176835)	-231.0	NM_176835	72778.0	Mm.30544	NM_176835	ENSMUSG00000038009	Dnajc22	2810451A06Rik|AI506245	DnaJ heat shock protein family (Hsp40) member C22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-121722139-2	chr3	121722039	121722239	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1398.0	NM_010171	14066.0	Mm.273188	NM_010171	ENSMUSG00000028128	F3	AA409063|CD142|Cf-3|Cf3|TF	coagulation factor III	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-49088233-5	chr11	49088177	49088377	+	811.880005	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008330, intron 1 of 1)	intron (NM_008330, intron 1 of 1)	1260.0	NM_008330	15953.0	Mm.24769	NM_008330	ENSMUSG00000078920	Ifi47	47kDa|IRG-47|Ifggc1|Igrd|Iigp4|Iipg4|Irgd	interferon gamma inducible protein 47	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-127615616-4	chr5	127615523	127615723	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133895, intron 1 of 7)	intron (NM_133895, intron 1 of 7)	1769.0	NM_133895	100561.0	Mm.28506	NM_133895	ENSMUSG00000029416	Slc15a4	AA987064|AW742963|C130069N12Rik|PHT1|PTR4	solute carrier family 15, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-12442734-4	chr19	12442637	12442837	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1C|Other|Other	14832.0	NM_019540	56093.0	Mm.285849	NM_019540	ENSMUSG00000040065	Pfpl	Epcs5|Epcs50	pore forming protein-like	protein-coding	4.15451658979525	4.35127513925026	4.71227276353933	4.98204751913952	4.60017422678556	4.89019359998779	4.04346077414494	2.75928488381887	-0.391309585021072	0.420655696791738	0.900322118218157
Merged-chr5-65990256-4	chr5	65990149	65990349	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027961, intron 5 of 6)	intron (NR_027961, intron 5 of 6)	14036.0	NR_027961	231253.0	Mm.436542	NM_177679	ENSMUSG00000054598	9130230L23Rik	-	RIKEN cDNA 9130230L23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-31281685-2	chr9	31281585	31281785	+	902.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10284.0	NM_001101597	638580.0	Mm.373655	NM_001101597		Gm7244	EG638580	predicted gene 7244	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97463119-2	chr6	97462994	97463194	+	849.599976	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	MER45B|DNA|hAT-Tip100	-3808.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	2.97600458992023	3.78806570969737	1.49401393395562	2.13468446250397	2.84551384771607	2.88936342189125	3.0892410617419	2.45551725095158	-0.0989632052920083	0.90398799744658	0.998431161219273
Merged-chr4-133130480-4	chr4	133130397	133130597	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153423)	promoter-TSS (NM_153423)	-136.0	NM_153423	242687.0	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26715542-4	chr17	26715426	26715626	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029870)	promoter-TSS (NM_029870)	-124.0	NM_029870	77128.0	Mm.275414	NM_029870	ENSMUSG00000048249	Crebrf	A930001N09Rik|LRF	CREB3 regulatory factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-102022740-2	chr13	102022640	102022840	+	921.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	-254523.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-31948089-2	chr12	31947989	31948189	+	731.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177993, intron 1 of 8)	intron (NM_177993, intron 1 of 8)	2156.0	NM_177993	73389.0	Mm.390461	NM_153198	ENSMUSG00000002996	Hbp1	1700058O05Rik|BE629963|C330012F01Rik|C86454	high mobility group box transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-152767776-4	chr2	152767666	152767866	+	892.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289739, intron 2 of 4)	L2b|LINE|L2	13593.0	NM_053091	84682.0	Mm.196668	NM_053091	ENSMUSG00000009876	Cox4i2	Cox4b|CoxIV-2	cytochrome c oxidase subunit 4I2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126822184-4	chr7	126822060	126822260	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026884, intron 4 of 7)	intron (NM_026884, intron 4 of 7)	-1143.0	NM_029978	68952.0	Mm.440393	NM_026884	ENSMUSG00000058966	Fam57b	1500016O10Rik|A330104J06Rik|AI413816|AW060769	family with sequence similarity 57, member B	protein-coding	4.23869708358663	3.01093494588318	4.18585372878497	4.22635476809631	4.18956068107842	3.3078866457187	4.16102803089197	3.08590028095943	-0.31618035620248	0.552463317032291	0.959523840754686
Merged-chr15-95906514-4	chr15	95906417	95906617	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 3 of 19)	intron (NM_175344, intron 3 of 19)	-76445.0	NR_155276	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-83149759-4	chr15	83149678	83149878	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178627)	promoter-TSS (NM_178627)	133.0	NR_004432	104307.0	Mm.471434	NR_004432	ENSMUSG00000065176	Rnu12	-	RNA U12, small nuclear	snRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-150135438-4	chr2	150135359	150135559	+	827.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023266, intron 1 of 2)	intron (NM_023266, intron 1 of 2)	1219.0	NM_023266	104348.0	Mm.485851	NM_023266	ENSMUSG00000068134	Zfp120	AI315103|E030042N05Rik|F80|MZF31|Zfp844	zinc finger protein 120	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-31097975-3	chr3	31097846	31098046	+	828.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011386, exon 2 of 7)	exon (NM_011386, exon 2 of 7)	2888.0	NM_001271772	20482.0	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30061933-4	chr2	30061926	30062126	+	901.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023871)	promoter-TSS (NM_023871)	30.0	NM_023871	56086.0	Mm.326055	NM_023871	ENSMUSG00000054766	Set	2610030F17Rik|5730420M11Rik|AA407739|I-2PP2A|StF-IT-1|TAF-I	SET nuclear oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4960611-4	chr16	4960509	4960709	+	889.7625119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028301, intron 1 of 16)	intron (NM_028301, intron 1 of 16)	3628.0	NM_028301	72615.0	Mm.290628	NM_028301	ENSMUSG00000022515	Anks3	2700067D09Rik|C81345|mKIAA1977	ankyrin repeat and sterile alpha motif domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-78035652-1	chr9	78035552	78035752	+	609.0	f1_balb.idr	Intergenic	Intergenic	-16306.0	NM_008103	14531.0	Mm.1400	NM_008103	ENSMUSG00000023333	Gcm1	GCMa|Gcm-rs2|Gcm1-rs1|glide	glial cells missing homolog 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-62285300-2	chr10	62285200	62285400	+	553.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010438, intron 14 of 21)	B1_Mus2|SINE|Alu	32862.0	NM_009314	21337.0	Mm.8054	NM_009314	ENSMUSG00000020081	Tacr2	Nk2r|Skr|Tac2r	tachykinin receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-117667093-4	chr5	117666999	117667199	+	819.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001312914, intron 5 of 19)	intron (NM_001312914, intron 5 of 19)	-199740.0	NM_008712	18125.0	Mm.44249	NM_008712	ENSMUSG00000029361	Nos1	2310005C01Rik|N-NOS|NC-NOS|NO|NOS|NOS-I|Nos-1|bNOS|nNOS	nitric oxide synthase 1, neuronal	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-51663789-2	chr3	51663689	51663889	+	583.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_174995, intron 1 of 4)	intron (NM_174995, intron 1 of 4)	2610.0	NM_001310482	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-107940434-1	chr13	107940334	107940534	+	584.0	f0_balb.idr	Intergenic	Intergenic	-50370.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-58212464-4	chr8	58212352	58212552	+	787.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175032, intron 4 of 11)	ORR1E|LTR|ERVL-MaLR	488344.0	NM_001177534	100271928.0	Mm.484123	NM_001177534		Gm15881	-	predicted gene 15881	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-25364850-2	chr10	25364750	25364950	+	566.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358754, intron 1 of 16)	(CA)n|Simple_repeat|Simple_repeat	5052.0	NM_001358751	13822.0	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-130520420-4	chr4	130520302	130520502	+	984.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53634.0	NM_025998	67149.0	Mm.423029	NM_025998	ENSMUSG00000078532	Nkain1	2610200G18Rik|2810426C15Rik	Na+/K+ transporting ATPase interacting 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70565061-2	chr11	70564961	70565161	+	670.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016713, intron 1 of 30)	intron (NM_016713, intron 1 of 30)	2180.0	NM_016713	50932.0	Mm.42967	NM_016713	ENSMUSG00000020827	Mink1	B55|MINK|Map4k6|Ysk2	misshapen-like kinase 1 (zebrafish)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-63116814-2	chr14	63116714	63116914	+	772.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5648.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25719490-4	chr7	25719385	25719585	+	976.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028771)	promoter-TSS (NM_028771)	-432.0	NM_028771	52132.0	Mm.278798	NM_028771	ENSMUSG00000002608	Ccdc97	1200014H14Rik|2810446P04Rik|AA545218|D7Ertd462e	coiled-coil domain containing 97	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-79333272-2	chr5	79333172	79333372	+	819.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	-1687299.0	NM_001347367	319387.0	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-75479485-4	chr1	75479358	75479558	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177056)	promoter-TSS (NM_177056)	13.0	NM_001001566	74241.0	Mm.260577	NM_001001565	ENSMUSG00000032997	Chpf	1700028N03Rik|AI414328|D1Bwg1363e	chondroitin polymerizing factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123455988-2	chr5	123455888	123456088	+	651.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_133917, exon 17 of 17)	3' UTR (NM_133917, exon 17 of 17)	26113.0	NM_029594	76399.0	Mm.75049	NM_029594	ENSMUSG00000029437	Il31	1700013B14Rik	interleukin 31	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-102481578-4	chr5	102481489	102481689	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_029270, exon 1 of 10)	5' UTR (NM_029270, exon 1 of 10)	198.0	NM_029270	231532.0	Mm.440191	NM_029270	ENSMUSG00000057315	Arhgap24	0610025G21Rik	Rho GTPase activating protein 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-58716355-3	chr1	58716199	58716399	+	839.88092	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355056, intron 1 of 8)	intron (NM_001355056, intron 1 of 8)	3013.0	NM_001355056	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59784439-4	chr15	59784347	59784547	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10512.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-117780523-4	chr2	117780428	117780628	+	861.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32274.0	NR_126427	100504728.0	Mm.413174	NR_126427		Gm13985	-	predicted gene 13985	ncRNA	4.15285474808052	2.01935640645275	2.8433835791527	4.04118094418757	3.20279968610608	3.09813224075218	3.10340012614395	3.00420200876771	-0.6978929049375	0.303824252038058	0.805646834231461
Merged-chr15-62401361-5	chr15	62401204	62401404	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-181853.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-42457684-4	chr17	42457588	42457788	+	996.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355270, intron 2 of 2)	MTC|LTR|ERVL-MaLR	141088.0	NM_001355270	627626.0	Mm.390999	NM_028474	ENSMUSG00000042256	Ptchd4	3110082D06Rik|Gm321	patched domain containing 4	protein-coding	0.972327192926282	1.76275364102347	0.725056237496159	0.464489585947516	0.445793965088562	1.87111505866248	0.48090063324555	0.466751455629422	-0.252264986688574	0.878878424889664	0.998431161219273
Merged-chr5-130204695-4	chr5	130204523	130204723	+	872.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199059, intron 4 of 8)	intron (NM_001199059, intron 4 of 8)	-15121.0	NM_001081394	71667.0	Mm.258508	NM_027854	ENSMUSG00000053094	Tmem248	0610007L01Rik|A930023A16Rik|AW557951|G430067H08Rik	transmembrane protein 248	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-5564083-2	chr3	5563983	5564183	+	554.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001267715, intron 1 of 3)	L1_Mus2|LINE|L1	12165.0	NM_001163301	19302.0	Mm.132336	NM_008994	ENSMUSG00000040374	Pex2	D3Ertd138e|PAF-1|PMP35|Pxmp3	peroxisomal biogenesis factor 2	protein-coding	0.128520422359932	0.647279475345196	0.141411460335461	0.304306163839717	0.129719951801301	0.65700684881314	0.142793106639093	0.783668511637682	0.94584529613238	0.640184042973031	1
Merged-chr4-35222112-4	chr4	35222012	35222212	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081343, intron 1 of 10)	Tigger7|DNA|TcMar-Tigger	3768.0	NM_001081343	73205.0	Mm.331544	NM_001081343	ENSMUSG00000028300	3110043O21Rik	AI840585|C9orf72	RIKEN cDNA 3110043O21 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-91179452-4	chr15	91179374	91179574	+	928.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011994, intron 3 of 9)	intron (NM_011994, intron 3 of 9)	12533.0	NM_011994	26874.0	Mm.295456	NM_011994	ENSMUSG00000055782	Abcd2	ABC39|ALDL1|ALDR|ALDRP	ATP-binding cassette, sub-family D (ALD), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-4216429-2	chr3	4216329	4216529	+	655.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2A|LINE|L1	-582279.0	NR_045272	100503859.0	Mm.75172	NR_045272	ENSMUSG00000098659	1110015O18Rik	-	RIKEN cDNA 1110015O18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-14565669-2	chr19	14565569	14565769	+	893.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001302951, intron 4 of 19)	intron (NM_001302951, intron 4 of 19)	31544.0	NM_001302951	21888.0	Mm.103638	NM_011600	ENSMUSG00000024642	Tle4	5730411M05Rik|AA792082|Bce-1|Bce1|ESTM13|ESTM14|Grg4|X83332|X83333|grg-4	transducin-like enhancer of split 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70234240-2	chr11	70234140	70234340	+	806.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029581)	promoter-TSS (NR_029581)	-477.0	NR_030444	751537.0		NR_030444	ENSMUSG00000105220	Mir497	Mir|Mirn497|mir-497a|mmu-mir-497|mmu-mir-497a	microRNA 497	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-103033615-4	chr14	103033516	103033716	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045657, intron 1 of 2)	intron (NR_045657, intron 1 of 2)	187.0	NR_045657	71264.0	Mm.399572	NR_045657	ENSMUSG00000114980	4933432I03Rik	-	RIKEN cDNA 4933432I03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-5127742-2	chr7	5127642	5127842	+	679.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1792.0	NM_009028	19428.0	Mm.322186	NM_009028	ENSMUSG00000083649	Rasl2-9	M2|Ran|Ran/M2|Rasl2-9-ps	RAS-like, family 2, locus 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-19869710-4	chr4	19869636	19869836	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	51009.0	NM_028746	74087.0	Mm.173833	NM_028746	ENSMUSG00000041052	Slc7a13	0610009O04Rik|AGT-1|AGT1|XAT2	solute carrier family 7, (cationic amino acid transporter, y+ system) member 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-113657702-2	chr6	113657602	113657802	+	640.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 2 of 11)	B4A|SINE|B4	19235.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71484538-1	chr17	71484438	71484638	+	1000.0	f1_balb.idr	Intergenic	B1_Mus2|SINE|Alu	-9195.0	NM_028887	74355.0	Mm.194450	NM_028887	ENSMUSG00000024054	Smchd1	4931400A14Rik|AW554188|MommeD1|mKIAA0650	SMC hinge domain containing 1	protein-coding	0.10538758708504	-0.0154270803747716	0.289950473388527	0.483879951225764	0.51438788450307	-0.0143456318812532	-0.0191604491801826	-0.0232559684378573	-0.668512197115702	0.755738044598386	1
Merged-chr2-127270173-4	chr2	127270064	127270264	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_139308)	promoter-TSS (NM_139308)	-65.0	NM_139308	99138.0	Mm.41271	NM_139308	ENSMUSG00000027367	Stard7	AI852671|AL022671|AW544915	START domain containing 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-88765788-3	chr5	88765679	88765879	+	946.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007832, intron 1 of 6)	L1ME1|LINE|L1	766.0	NM_007832	13178.0	Mm.298892	NM_007832	ENSMUSG00000029366	Dck	-	deoxycytidine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131279268-1	chr1	131279168	131279368	+	546.0	f1_c57bl6.idr	intron (NM_019777, intron 1 of 21)	intron (NM_019777, intron 1 of 21)	295.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-155700080-2	chr4	155699980	155700180	+	633.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4735.0	NM_026899	68991.0	Mm.294770	NM_026899	ENSMUSG00000029038	Ssu72	1190002E22Rik|1500011L16Rik|2610101M12Rik	Ssu72 RNA polymerase II CTD phosphatase homolog (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-58527194-2	chr3	58527094	58527294	+	660.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001005509, intron 1 of 13)	B3A|SINE|B2	-1310.0	NM_030685	28146.0	Mm.29702	NM_030685	ENSMUSG00000027808	Serp1	D3Ucla1|Ramp4	stress-associated endoplasmic reticulum protein 1	protein-coding	-2.18308165884198	-2.15547475440471	-2.16382331017202	-2.1706810624505	-2.18114370519566	-2.15366558754311	-2.03057248461154	-2.16945352807143	0.759018020146679	0.829933115115583	1
Merged-chr7-63933997-4	chr7	63933889	63934089	+	963.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021366, intron 1 of 1)	intron (NM_021366, intron 1 of 1)	4926.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-125128630-2	chr4	125128530	125128730	+	683.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153159)	promoter-TSS (NM_153159)	-749.0	NM_153159	230738.0	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-19019133-2	chr10	19019033	19019233	+	789.214233	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3723.0	NM_009397	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-34457365-3	chr4	34457244	34457444	+	917.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-93271.0	NM_001007589	433693.0	Mm.389532	NM_026019	ENSMUSG00000028291	Akirin2	2700059D21Rik|AA114675|AA522011|AU019887|Akirin-2	akirin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-122575621-3	chr10	122575518	122575718	+	878.522217	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5727.0	NR_040616	319272.0	Mm.411763	NR_040616	ENSMUSG00000112095	A130077B15Rik	-	RIKEN cDNA A130077B15 gene	ncRNA	1.76819295309004	1.14474567787094	2.02146279147887	1.96330295390232	1.9643293139513	1.5735296709118	1.52733793783814	1.63204423569856	-0.266537617799446	0.805766023837836	0.998431161219273
Merged-chr13-93179756-4	chr13	93179641	93179841	+	898.3250119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_154997, intron 4 of 15)	intron (NR_154997, intron 4 of 15)	12676.0	NM_001361536	100715.0	Mm.242865	NM_133905	ENSMUSG00000042167	Papd4	8030446C20Rik|AI649009|GLD-2|Gld2	PAP associated domain containing 4	protein-coding	3.02060224168455	2.67342230649912	3.70482145024952	3.41368079765257	2.95911390808022	3.10081150018444	3.29591493416413	3.2801236310613	-0.168958334994443	0.779571302137803	0.998431161219273
Merged-chr9-49489092-4	chr9	49489006	49489206	+	866.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2881.0	NM_172770	235330.0	Mm.177413	NM_172770	ENSMUSG00000040219	Ttc12	E330017O07Rik	tetratricopeptide repeat domain 12	protein-coding	2.90391673296811	3.42096853656764	2.85377469408828	1.82736182824504	3.39536245419382	3.36514572377139	2.62826474998675	2.78685287848192	0.39140834586527	0.583215333881243	0.966599221005409
Merged-chr2-109281134-3	chr2	109281038	109281238	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139303, intron 1 of 16)	intron (NM_139303, intron 1 of 16)	400.0	NM_139303	228421.0	Mm.274086	NM_139303	ENSMUSG00000027115	Kif18a	AU024633|B130001M12Rik|gcd2	kinesin family member 18A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-7756982-3	chr18	7756882	7757082	+	810.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-111850.0	NM_001282093	225131.0	Mm.204524	NM_153085	ENSMUSG00000024283	Wac	1110067P07Rik|A230035H12Rik|AI256735|AI256776|Wwp4	WW domain containing adaptor with coiled-coil	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-120140809-4	chr9	120140692	120140892	+	918.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8950.0	NR_153960	17433.0	Mm.432562	NM_008614	ENSMUSG00000032517	Mobp	AI835053|AI839848|MOBP155|MOBP170|MOBP69|MOBP73|MOBP81|R74645	myelin-associated oligodendrocytic basic protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-60212091-2	chr11	60211991	60212191	+	734.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358315, intron 1 of 18)	intron (NM_001358315, intron 1 of 18)	-1620.0	NM_001358314	20787.0	Mm.278701	NM_011480	ENSMUSG00000020538	Srebf1	ADD1|SREBP1|bHLHd1	sterol regulatory element binding transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-32224997-4	chr11	32224889	32225089	+	953.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1516.0	NM_010822	268395.0	Mm.263161	NM_010822	ENSMUSG00000020287	Mpg	9830006D05|AI326268|APNG|Aag|Mid1	N-methylpurine-DNA glycosylase	protein-coding	1.87192795410236	2.01828226390833	1.83904415191546	1.78457743556061	1.47857267627939	1.05662894347871	1.59939797127538	1.02209170239703	-1.96020676536337	0.0949967760341607	0.477397401941879
Merged-chr12-3349576-4	chr12	3349458	3349658	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15574.0	NM_008445	16570.0	Mm.7688	NM_008445	ENSMUSG00000020668	Kif3c	mKIAA4058	kinesin family member 3C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-182910597-2	chr1	182910497	182910697	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-44191.0	NM_016928	53791.0	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-98869274-4	chr7	98869157	98869357	+	887.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30412.0	NM_001285795	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-73173866-4	chr14	73173771	73173971	+	993.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001170694, exon 11 of 15)	exon (NM_001170694, exon 11 of 15)	31086.0	NR_033185	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4334004-4	chr19	4333889	4334089	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001984, intron 12 of 20)	intron (NM_001001984, intron 12 of 20)	-27767.0	NM_001290818	110355.0	Mm.254144	NM_130863	ENSMUSG00000024858	Grk2	Adrbk-1|Adrbk1|Bark-1|beta ARK|betaARK1	G protein-coupled receptor kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70101537-4	chr14	70101435	70101635	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021328, intron 1 of 8)	intron (NM_021328, intron 1 of 8)	1442.0	NM_001360404	57784.0	Mm.24186	NM_021328	ENSMUSG00000022089	Bin3	1700015F07Rik	bridging integrator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-56541275-3	chr12	56541176	56541376	+	788.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4368.0	NM_009385	21869.0	Mm.89972	NM_009385	ENSMUSG00000001496	Nkx2-1	AV026640|Nkx2.1|T/EBP|Titf1|Ttf-1	NK2 homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-146059601-4	chr3	146059522	146059722	+	929.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172864, intron 16 of 22)	Tigger7|DNA|TcMar-Tigger	48414.0	NM_172864	242253.0	Mm.235040	NM_172864	ENSMUSG00000043020	Wdr63	4931433A13Rik|IC140|Ida7	WD repeat domain 63	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-21849570-1	chr4	21849470	21849670	+	554.0	f1_balb.idr	intron (NM_025669, intron 1 of 11)	L1MC3|LINE|L1	-1122.0	NR_028384	67735.0	Mm.391650	NR_028384		4930528A17Rik	-	RIKEN cDNA 4930528A17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-66158740-4	chr2	66158614	66158814	+	958.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33921.0	NM_015736	14425.0	Mm.439760	NM_015736	ENSMUSG00000026994	Galnt3	-	polypeptide N-acetylgalactosaminyltransferase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-108275604-4	chr12	108275537	108275737	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159910)	promoter-TSS (NM_001159910)	-220.0	NM_001159910	668158.0	Mm.482792	NM_001159910	ENSMUSG00000084883	Ccdc85c	EG668158|Gm265|Gm9010|hhy	coiled-coil domain containing 85C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-20800815-4	chr13	20800750	20800950	+	927.241699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012054, intron 1 of 20)	MTB_Mm|LTR|ERVL-MaLR	6737.0	NM_012054	27052.0	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	2.42937650128131	1.77227302949883	2.27195238677472	2.48337462868978	1.60930109614439	1.31362089200074	2.04559749903422	2.41159902301536	-0.874266455460705	0.367794627199409	0.862661267523493
Merged-chr5-142911701-4	chr5	142911637	142911837	+	881.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4983.0	NM_007393	11461.0	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-98023840-1	chr8	98023740	98023940	+	640.0	f1_c57bl6.idr	Intergenic	L1Md_A|LINE|L1	-988047.0	NR_110579	100873092.0	Mm.414599	NR_110579	ENSMUSG00000089819	Gm15679	-	predicted gene 15679	ncRNA	-1.58994551673671	-1.55912852307891	-1.56844783632235	-1.57610299769523	-1.18549093183599	-1.55710898902261	-1.56633814807757	-1.57473272746952	1.78703309985663	0.610309988231842	1
Merged-chr3-84504504-4	chr3	84504391	84504591	+	995.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293801, intron 7 of 7)	intron (NM_001293801, intron 7 of 7)	-24052.0	NM_001033301	229474.0	Mm.331107	NM_001033301	ENSMUSG00000041842	Fhdc1	6330505N24Rik|Gm126	FH2 domain containing 1	protein-coding	4.21567527247758	4.96339936137728	4.71715338609494	5.79159953960201	5.13772731601493	4.51774395408487	6.07088641026362	4.94779519698579	0.292321224911291	0.482617434139691	0.930327710476536
Merged-chr10-128037015-4	chr10	128036926	128037126	+	995.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001282976, intron 2 of 7)	intron (NM_001282976, intron 2 of 7)	1680.0	NM_001113199	17938.0	Mm.3746	NM_013608	ENSMUSG00000061315	Naca	AL022831|AL024382|Gm1878|mKIAA0363|skNAC	nascent polypeptide-associated complex alpha polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-120140916-2	chr10	120140816	120141016	+	608.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_028679)	TTS (NM_028679)	-27951.0	NM_080446	117599.0	Mm.214703	NM_080446	ENSMUSG00000020228	Helb	AI447783|D10Ertd664e	helicase (DNA) B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-142359088-2	chr7	142358988	142359188	+	697.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347541, intron 2 of 2)	intron (NM_001347541, intron 2 of 2)	13171.0	NM_177265	320802.0	Mm.154486	NM_177265	ENSMUSG00000045777	Ifitm10	6330512M04Rik|AI848576|DSPA3	interferon induced transmembrane protein 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-7583372-4	chr19	7583260	7583460	+	913.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362425, intron 4 of 4)	intron (NM_001362425, intron 4 of 4)	23833.0	NM_001356574	56072.0	Mm.298242	NM_019516	ENSMUSG00000024972	Lgals12	Grip1|gal-12	lectin, galactose binding, soluble 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-43466139-4	chr1	43466040	43466240	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010879, intron 1 of 4)	intron (NM_010879, intron 1 of 4)	20389.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-80294874-4	chr18	80294778	80294978	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001190373, exon 4 of 4)	3' UTR (NM_001190373, exon 4 of 4)	38572.0	NM_025861	66943.0	Mm.29247	NM_025861	ENSMUSG00000034006	Pqlc1	2310009N05Rik|4933425L21Rik|5730564E11Rik|C78974	PQ loop repeat containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-79496523-4	chr8	79496427	79496627	+	812.991699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-97059.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-112727531-2	chr6	112727431	112727631	+	742.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_080448, exon 21 of 22)	exon (NM_080448, exon 21 of 22)	-30861.0	NM_001167730	58186.0	Mm.103812	NM_021385	ENSMUSG00000030254	Rad18	2810024C04Rik|Rad18sc	RAD18 E3 ubiquitin protein ligase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-99241799-2	chr5	99241699	99241899	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_181318, intron 2 of 13)	intron (NM_181318, intron 2 of 13)	11128.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-182614647-3	chr1	182614543	182614743	+	917.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130890, intron 12 of 20)	intron (NM_130890, intron 12 of 20)	49636.0	NM_130890	170725.0	Mm.189201	NM_130890	ENSMUSG00000038599	Capn8	nCL-2|nCL-2'	calpain 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-8135398-4	chr10	8135278	8135478	+	907.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-179255.0	NM_138667	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	3.01788280652139	2.54925550245555	2.21484531204005	3.18178778278641	1.76223846576048	1.26089040702687	1.50409712734284	1.45683350766524	-3.23260888425262	0.00104745741574887	0.0201831810612766
Merged-chr9-90248312-2	chr9	90248212	90248412	+	563.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 2 of 12)	(CCA)n|Simple_repeat|Simple_repeat	22457.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-68096730-4	chr18	68096633	68096833	+	945.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172631, intron 2 of 5)	intron (NM_172631, intron 2 of 5)	-131213.0	NM_001357444	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	1.25744217727886	1.39267308538711	2.00430803738433	1.31641046536049	1.26645018269121	2.51981067457967	2.24471773348596	2.34953871025976	1.78884760541691	0.0933954280541013	0.473608768298017
Merged-chr13-77166218-3	chr13	77166133	77166333	+	653.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081353, intron 1 of 3)	MER21C|LTR|ERVL	30697.0	NM_001145676	72371.0	Mm.81475	NM_028215	ENSMUSG00000071252	2210408I21Rik	-	RIKEN cDNA 2210408I21 gene	protein-coding	2.39324277353794	1.3869310153783	1.34630819287116	1.80323093627935	2.28042462095673	1.13636381290221	1.35538809130569	2.47427540177603	0.348067921332371	0.757811168709904	0.998431161219273
Merged-chr1-54835973-3	chr1	54835866	54836066	+	827.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081433, intron 1 of 27)	intron (NM_001081433, intron 1 of 27)	90421.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	0.785668042873418	0.63402624217784	2.11572014378349	0.602902829279517	0.792919265598961	1.44991497545899	1.6287706094758	0.605335490524604	-0.147852061394399	0.922113932869837	0.998431161219273
Merged-chr7-121035472-3	chr7	121035359	121035559	+	763.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021554, intron 1 of 4)	intron (NM_021554, intron 1 of 4)	1014.0	NM_021554	59052.0	Mm.29122	NM_021554	ENSMUSG00000030876	Mettl9	0610012D09Rik|AA517660|Drev|MNCb-5680	methyltransferase like 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-125359682-3	chr8	125359573	125359773	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	133160.0	NM_001081337	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	0.236841917207886	0.690644960252951	0.401464620028308	0.798446501504672	0.576832396425176	0.252302472211594	0.405874326507555	0.243452899963053	-1.35229851399401	0.473746121247658	1
Merged-chr9-75426105-2	chr9	75426005	75426205	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER21C|LTR|ERVL	-15419.0	NM_001039522	235497.0	Mm.41508	NM_001006122	ENSMUSG00000042487	Leo1	Gm185	Leo1, Paf1/RNA polymerase II complex component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-114861644-4	chr9	114861563	114861763	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1H1|LTR|ERVL-MaLR	-17511.0	NM_027294	70031.0	Mm.150064	NM_027294	ENSMUSG00000041012	Cmtm8	2700018N07Rik|AA408515|Cklfsf8	CKLF-like MARVEL transmembrane domain containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-79414786-4	chr15	79414689	79414889	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11486.0	NM_172608	223693.0	Mm.323358	NM_172608	ENSMUSG00000009035	Tmem184b	2610507A11|4732495E13Rik	transmembrane protein 184b	protein-coding	4.5333895427764	5.28353812501855	5.37002413404397	4.97340717834078	4.40182364221605	4.10958257731397	4.49637767194844	4.51697711386317	-0.830217929486111	0.0212398727835576	0.186738637267067
Merged-chr3-79237830-4	chr3	79237747	79237947	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045502, intron 1 of 2)	ORR1A4|LTR|ERVL-MaLR	24928.0	NR_045502	70924.0	Mm.444622	NR_045502	ENSMUSG00000104585	4921511C10Rik	-	RIKEN cDNA 4921511C10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-32634569-1	chr12	32634469	32634669	+	548.0	f1_c57bl6.idr	Intergenic	Intergenic	-185766.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	0.00674334847294827	0.0445469350782305	0.032553489878917	0.0230484228592824	0.00921259166747018	1.51676432841642	1.06315891475313	0.0247254409900945	4.69312835975918	0.167497257561072	0.633485087165721
Merged-chr9-14835519-4	chr9	14835409	14835609	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001310728, exon 19 of 19)	3' UTR (NM_001310728, exon 19 of 19)	-24701.0	NM_001310734	14608.0	Mm.4672	NM_010287	ENSMUSG00000031932	Gpr83	AW045253|Gir|Gpr72|RP105|RP39|RP82	G protein-coupled receptor 83	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80841213-2	chr7	80841113	80841313	+	871.125	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20895.0	NM_009553	22691.0	Mm.358645	NM_009553	ENSMUSG00000038797	Zscan2	Zfp-29|Zfp29	zinc finger and SCAN domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-4491636-3	chr7	4491607	4491807	+	786.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029834, intron 3 of 21)	intron (NM_029834, intron 3 of 21)	9973.0	NM_029834	232807.0	Mm.360391	NM_029834	ENSMUSG00000019254	Ppp1r12c	2410197A17Rik|AI839747|B430101M08|Mbs85	protein phosphatase 1, regulatory (inhibitor) subunit 12C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-58139865-2	chr15	58139706	58139906	+	699.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	-1560.0	NM_001326602	76773.0	Mm.26771	NM_029734	ENSMUSG00000022359	Wdyhv1	2410187C16Rik|AU014961|AW550036|Ntaq1	WDYHV motif containing 1	protein-coding	1.77529975369916	1.38305238147441	1.34853437276622	1.63186023781917	1.97088390630466	2.11633156402259	1.68791450705686	1.76627645333851	1.11575690316042	0.283611430482391	0.786828258731554
Merged-chr2-26470974-2	chr2	26470874	26471074	+	693.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_105962)	promoter-TSS (NR_105962)	-855.0	NR_105962	102465602.0		NR_105962	ENSMUSG00000098548	Mir6996	Gm27531|mmu-mir-6996	microRNA 6996	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-116977991-4	chr2	116977876	116978076	+	898.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	77824.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-106911421-4	chr4	106911326	106911526	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023672)	promoter-TSS (NM_023672)	-44.0	NM_198438	72475.0	Mm.195635	NM_023672	ENSMUSG00000061887	Ssbp3	2610021L12Rik|2610200M23Rik|5730488C10Rik|AI854733|AW551939|LAST|SSDP1	single-stranded DNA binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89088740-2	chr3	89088640	89088840	+	863.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028188, intron 8 of 10)	intron (NM_028188, intron 8 of 10)	1291.0	NM_001083808	72296.0	Mm.27687	NM_028188	ENSMUSG00000041263	Rusc1	2210403N08Rik|AA408288|NESCA	RUN and SH3 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-102274147-3	chr15	102274053	102274253	+	677.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5303.0	NM_134100	106073.0	Mm.287740	NM_134100	ENSMUSG00000045665	Mfsd5	AA409375|AW556797|D15Mgi27	major facilitator superfamily domain containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-48266789-2	chr9	48266689	48266889	+	849.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	74109.0	NM_030069	78252.0	Mm.31626	NM_030069	ENSMUSG00000032028	Nxpe2	4432416J03Rik|AI323362|Fam55b	neurexophilin and PC-esterase domain family, member 2	protein-coding	1.11404961412298	1.26648949268257	0.720138143176292	1.49398095481021	0.862896159052553	1.40835937378258	0.722645616558745	1.18641016122706	-0.459449122335783	0.74717047180787	0.998431161219273
Merged-chr4-8545247-1	chr4	8545147	8545347	+	590.0	f0_balb.idr	intron (NM_021518, intron 1 of 7)	intron (NM_021518, intron 1 of 7)	9603.0	NM_021518	59021.0	Mm.397471	NM_021518	ENSMUSG00000047187	Rab2a	9330148M11Rik|C80220|Rab2	RAB2A, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-105575469-4	chr10	105575376	105575576	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177368)	promoter-TSS (NM_177368)	925.0	NR_038032	327812.0	Mm.191660	NR_038032	ENSMUSG00000085282	Gm15663	9330159K06	predicted gene 15663	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-106280580-4	chr9	106280475	106280675	+	966.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027354)	promoter-TSS (NM_027354)	-486.0	NM_027354	70235.0	Mm.23054	NM_027354	ENSMUSG00000023345	Poc1a	2510040D07Rik|Wdr51a|cha	POC1 centriolar protein A	protein-coding	3.10511801941924	3.59880981631815	3.56629783278552	3.83247486054371	3.89907642645245	3.52655516920035	4.44500072357555	4.1849212211771	0.736140958832679	0.136216496166905	0.576142956877977
Merged-chr3-9793852-1	chr3	9793752	9793952	+	682.0	f0_c57.idr	intron (NM_001195031, intron 1 of 8)	ORR1E|LTR|ERVL-MaLR	39827.0	NM_053182	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	-0.861335013053442	-0.0789704642554707	-0.661073092720189	-0.856724297531445	-0.860647807769238	-0.844895787288821	-0.853167358525472	-0.856240314372914	-3.22176204313607	0.267536253145129	1
Merged-chr9-110635371-4	chr9	110635251	110635451	+	859.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_106186)	TTS (NR_106186)	764.0	NR_106186	102466885.0		NR_106186	ENSMUSG00000099275	Mir8107	Gm27455|mmu-mir-8107	microRNA 8107	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-104518616-3	chr3	104518516	104518716	+	809.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6698.0	NM_001310698	269473.0	Mm.34855	NM_001025067	ENSMUSG00000032913	Lrig2	4632419I10Rik|BB096938|LIG-2	leucine-rich repeats and immunoglobulin-like domains 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-110676257-1	chr9	110676157	110676357	+	570.0	f0_c57.idr	intron (NM_028312, intron 1 of 6)	ID_B1|SINE|B4	19754.0	NM_028312	72654.0	Mm.249115	NM_028312	ENSMUSG00000019659	Ccdc12	2700094L05Rik|C76605	coiled-coil domain containing 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-18807848-2	chr13	18807748	18807948	+	722.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172120, intron 7 of 28)	intron (NM_172120, intron 7 of 28)	90556.0	NM_172120	218035.0	Mm.27389	NM_172120	ENSMUSG00000041236	Vps41	AI317346|Vam2|mVam2	VPS41 HOPS complex subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-52483689-4	chr2	52483590	52483790	+	944.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037099, intron 2 of 13)	intron (NM_001037099, intron 2 of 13)	-58816.0	NM_182994	75423.0	Mm.314378	NM_182994	ENSMUSG00000036093	Arl5a	2410015N24Rik|2810410P22Rik|AA408731|AW610751|Arl5|T25534	ADP-ribosylation factor-like 5A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-31433717-2	chr17	31433617	31433817	+	701.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008804, intron 4 of 18)	PB1D10|SINE|Alu	47483.0	NM_001163748	18585.0	Mm.10812	NM_008804	ENSMUSG00000041119	Pde9a	PDE9A1	phosphodiesterase 9A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-5321001-4	chr5	5320875	5321075	+	870.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011074, intron 2 of 14)	intron (NM_011074, intron 2 of 14)	-54907.0	NM_001310448	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80744073-2	chr10	80743973	80744173	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1798.0	NM_007460	11776.0	Mm.27082	NM_007460	ENSMUSG00000020198	Ap3d1	AA407035|Ap3d|Bolvr|mBLVR1|mh|mocha	adaptor-related protein complex 3, delta 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140743572-2	chr5	140743472	140743672	+	635.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_173405, intron 3 of 7)	ID_B1|SINE|B4	19445.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-86825740-1	chr8	86825640	86825840	+	712.0	f0_balb.idr	Intergenic	Intergenic	59518.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-70641404-2	chr13	70641304	70641504	+	551.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3770.0	NM_144837	218333.0	Mm.139738	NM_144837	ENSMUSG00000034525	Ice1	C77245|mKIAA0947	interactor of little elongation complex ELL subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-98901439-4	chr12	98901341	98901541	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081191)	promoter-TSS (NM_001081191)	43.0	NM_001081191	319670.0	Mm.390484	NM_001081191	ENSMUSG00000051166	Eml5	BC027154|C130068M19Rik	echinoderm microtubule associated protein like 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-39420172-7	chr6	39420023	39420223	+	980.142883	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311109)	promoter-TSS (NM_001311109)	246.0	NM_018810	54484.0	Mm.270484	NM_018810	ENSMUSG00000029922	Mkrn1	RFP	makorin, ring finger protein, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-57917853-2	chr9	57917753	57917953	+	998.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_027086, intron 3 of 10)	intron (NM_027086, intron 3 of 10)	6867.0	NM_001122873	69459.0	Mm.41735	NM_027086	ENSMUSG00000055720	Ubl7	2300004C15Rik	ubiquitin-like 7 (bone marrow stromal cell-derived)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-102846683-4	chr13	102846566	102846766	+	979.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175171, intron 5 of 28)	intron (NM_175171, intron 5 of 28)	86411.0	NR_130171	76624.0	Mm.426384	NR_130171	ENSMUSG00000091906	1700099I09Rik	-	RIKEN cDNA 1700099I09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-31351424-2	chr15	31351324	31351524	+	557.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027496, intron 1 of 3)	intron (NM_027496, intron 1 of 3)	16335.0	NM_001357923	67434.0	Mm.102470	NM_026153	ENSMUSG00000022237	Ankrd33b	0610012A05Rik|3021401C12Rik|5730557B15Rik	ankyrin repeat domain 33B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-5770749-2	chr18	5770649	5770849	+	691.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360982, intron 7 of 7)	intron (NM_001360982, intron 7 of 7)	178102.0	NM_001360981	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71629437-4	chr8	71629332	71629532	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001029873, exon 42 of 42)	exon (NM_001029873, exon 42 of 42)	1674.0	NR_106035	102466799.0		NR_106035	ENSMUSG00000098976	Mir6769b	Gm27546|mmu-mir-6769b	microRNA 6769b	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-74601403-4	chr1	74601322	74601522	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001305230)	promoter-TSS (NM_001305230)	-25.0	NM_001305230	57751.0	Mm.280920	NM_021313	ENSMUSG00000026171	Rnf25	0610009H16Rik|AO7	ring finger protein 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-12971607-2	chr18	12971507	12971707	+	923.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008378)	promoter-TSS (NM_008378)	-316.0	NM_008378	16210.0	Mm.8154	NM_008378	ENSMUSG00000024423	Impact	E430016J11Rik	impact, RWD domain protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-43767905-4	chr13	43767782	43767982	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17230.0	NM_009856	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-104460143-2	chr5	104460043	104460243	+	549.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008861, exon 1 of 15)	exon (NM_008861, exon 1 of 15)	686.0	NM_008861	18764.0	Mm.6442	NM_008861	ENSMUSG00000034462	Pkd2	C030034P18Rik|PC2|TRPP2	polycystic kidney disease 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71190260-2	chr17	71190160	71190360	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_022882, intron 1 of 19)	intron (NM_022882, intron 1 of 19)	6282.0	NM_022882	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21036427-1	chr9	21036327	21036527	+	550.0	f1_c57bl6.idr	exon (NM_008319, exon 7 of 11)	exon (NM_008319, exon 7 of 11)	-4099.0	NR_035438	100316681.0		NR_035438	ENSMUSG00000084663	Mir1900	Mirn1900|mmu-mir-1900	microRNA 1900	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-31510623-4	chr15	31510527	31510727	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172606, intron 1 of 25)	intron (NM_172606, intron 1 of 25)	20410.0	NM_172606	223455.0	Mm.272185	NM_172606	ENSMUSG00000039100	March6	3830408G03|F830029L24Rik|mKIAA0597	membrane-associated ring finger (C3HC4) 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-125380666-3	chr5	125380651	125380851	+	773.333313	f0_balb.idr|f1_balb.idr	Intergenic	B3A|SINE|B2	9266.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-56152295-2	chr9	56152195	56152395	+	678.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019793, intron 1 of 6)	intron (NM_019793, intron 1 of 6)	8775.0	NM_019793	56434.0	Mm.28484	NM_019793	ENSMUSG00000032324	Tspan3	1700055K04Rik|TM4-A|Tm4sf8	tetraspanin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-83151594-2	chr15	83151494	83151694	+	591.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2B2|LTR|ERVL	1949.0	NR_004432	104307.0	Mm.471434	NR_004432	ENSMUSG00000065176	Rnu12	-	RNA U12, small nuclear	snRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-63125508-2	chr14	63125408	63125608	+	934.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_007798, intron 1 of 9)	B1_Mur1|SINE|Alu	3046.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-3951479-1	chr9	3951379	3951579	+	550.0	f1_balb.idr	Intergenic	RLTR45|LTR|ERVK	358015.0	NM_026276	67618.0	Mm.33970	NM_026276	ENSMUSG00000025894	Aasdhppt	2010309J24Rik|2810407B07Rik|AASD-PPT|CGI-80|LYS2|LYS5	aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64602112-4	chr5	64602016	64602216	+	999.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045078, exon 3 of 4)	non-coding (NR_045078, exon 3 of 4)	8583.0	NR_045078	100042198.0	Mm.25191	NR_045078	ENSMUSG00000105402	Gm3716	Gm1683	predicted gene 3716	ncRNA	2.42391422302064	3.17985591414028	3.32388960409276	2.79320758798908	2.4443727817603	3.20272513559761	3.34881832325954	2.80756809853054	0.0380251036012173	0.954862059839222	0.998431161219273
Merged-chr11-86540057-2	chr11	86539957	86540157	+	579.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114334, intron 1 of 14)	PB1D7|SINE|Alu	4750.0	NM_028259	72508.0	Mm.394280	NM_028259	ENSMUSG00000020516	Rps6kb1	2610318I15Rik|4732464A07Rik|70kDa|AA959758|AI256796|AI314060|P70S6K1|S6K|S6K1|p70/85s6k|p70s6k	ribosomal protein S6 kinase, polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-98672755-4	chr7	98672649	98672849	+	910.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16180.0	NM_172280	233545.0	Mm.387819	NM_172280	ENSMUSG00000035401	Emsy	2210018M11Rik|2310016L09Rik|AU019521|AU019557	EMSY, BRCA2-interacting transcriptional repressor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-108195529-2	chr3	108195429	108195629	+	786.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_028061)	TTS (NM_028061)	5305.0	NM_028061	72023.0	Mm.246391	NM_028061	ENSMUSG00000048796	Cyb561d1	1600010M23Rik|AI605489|AW457162	cytochrome b-561 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-110900085-2	chr2	110899985	110900185	+	557.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355246, intron 1 of 3)	Lx2|LINE|L1	50159.0	NM_001355246	228432.0	Mm.483325	NM_001081556	ENSMUSG00000074968	Ano3	AI838058|B230324K02Rik|Tmem16c	anoctamin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-71162406-2	chr3	71162306	71162506	+	597.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3B|LINE|L1	-355115.0	NR_040556	625901.0	Mm.366028	NR_040556	ENSMUSG00000097252	Gm6634	EG625901	predicted gene 6634	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-91738917-2	chr6	91738817	91739017	+	688.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_009320, intron 6 of 14)	intron (NM_009320, intron 6 of 14)	54850.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-121341342-2	chr14	121341282	121341482	+	696.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145465, intron 1 of 10)	intron (NM_145465, intron 1 of 10)	37848.0	NM_145465	223255.0	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-108446359-2	chr5	108446259	108446459	+	597.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172883, intron 1 of 9)	intron (NM_172883, intron 1 of 9)	2741.0	NM_001359977	243197.0	Mm.106818	NM_172883	ENSMUSG00000029490	Mfsd7a	4732482E20Rik|Mfsd7|Slc49a3	major facilitator superfamily domain containing 7A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-77426104-3	chr8	77426028	77426228	+	601.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030113, intron 5 of 22)	intron (NM_030113, intron 5 of 22)	-90928.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-106788158-4	chr3	106788047	106788247	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007651, intron 1 of 7)	intron (NM_007651, intron 1 of 7)	2002.0	NM_007651	12508.0	Mm.316861	NM_007651	ENSMUSG00000040747	Cd53	AI323659|Ox-44|Tspan25	CD53 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-12419441-4	chr4	12419343	12419543	+	907.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-247428.0	NM_026558	68099.0	Mm.25340	NM_026558	ENSMUSG00000028218	Fam92a	6720467C03Rik|Fam92a1	family with sequence similarity 92, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-35199703-5	chr2	35199618	35199818	+	776.200012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026697, intron 1 of 7)	intron (NM_026697, intron 1 of 7)	1402.0	NM_026697	68365.0	Mm.198264	NM_026697	ENSMUSG00000026878	Rab14	0610030G24Rik|2810475J17Rik|A830021G03Rik|AI314285|AI649155|D030017L14Rik	RAB14, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-103017151-4	chr11	103017061	103017261	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026551)	promoter-TSS (NM_026551)	-14.0	NM_026551	68087.0	Mm.277449	NM_026551	ENSMUSG00000020935	Dcakd	3010024O21Rik|6720485C15Rik|AI849483	dephospho-CoA kinase domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-114788925-2	chr9	114788857	114789057	+	722.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_027294)	TTS (NM_027294)	-6964.0	NM_001252479	102545.0	Mm.35600	NM_133978	ENSMUSG00000032436	Cmtm7	AI481279|Cklfsf7|LNV	CKLF-like MARVEL transmembrane domain containing 7	protein-coding	2.33836033991472	2.44871612709291	1.13598496737946	3.17134627424742	1.67917488768287	1.17786641823826	1.42094473246555	2.29830585120443	-1.71338550598734	0.110061555674682	0.520054570255668
Merged-chr15-7114065-4	chr15	7113916	7114116	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15556.0	NM_001113386	16880.0	Mm.149720	NM_013584	ENSMUSG00000054263	Lifr	A230075M04Rik|AW061234|LIF	leukemia inhibitory factor receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-146767855-3	chr5	146767768	146767968	+	985.2777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011669, intron 2 of 8)	intron (NM_011669, intron 2 of 8)	27088.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	1.38228243514215	1.69413179226156	1.71738941326362	1.2380158020833	1.04804446713286	0.76283947568377	0.749387475965575	0.737742269585434	-3.46369241276865	0.0238648313973687	0.202210626487026
Merged-chr4-120746804-2	chr4	120746704	120746904	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081142, intron 1 of 13)	CpG	372.0	NM_001081142	60613.0	Mm.249977	NM_001081142	ENSMUSG00000028631	Kcnq4	-	potassium voltage-gated channel, subfamily Q, member 4	protein-coding	0.439789926711199	-0.00708699113518688	-0.0122279634882756	-0.0161901543000192	0.449805202989477	-0.00592724711450818	-0.0110946282028272	0.608852724934392	1.30960955614808	0.564785881028692	1
Merged-chr1-152623955-3	chr1	152623837	152624037	+	873.7023929999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346118, intron 2 of 18)	LTR78B|LTR|ERV1	1280.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-95048248-4	chr4	95048133	95048333	+	871.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010591)	TTS (NM_010591)	3989.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-56439628-4	chr8	56439538	56439738	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45330.0	NR_131020	75123.0	Mm.72666	NR_131020	ENSMUSG00000110310	4930518J21Rik	-	RIKEN cDNA 4930518J21 gene	ncRNA	-0.872916097538603	-0.858076750212072	0.212271930224195	-0.866682797913291	-0.871978848638189	-0.856861994422903	-0.861959313721536	-0.866035833892092	-3.81964142728853	0.171121984527918	1
Merged-chr2-4920773-1	chr2	4920673	4920873	+	622.0	f1_balb.idr	intron (NM_010726, intron 1 of 8)	B1_Mus2|SINE|Alu	1777.0	NM_010726	16922.0	Mm.391704	NM_010726	ENSMUSG00000026664	Phyh	AI256161|AI265699|Lnap1|PAHX	phytanoyl-CoA hydroxylase	protein-coding	-0.952887756482335	-0.937558971599884	-0.947256913508661	-0.949377552214781	-0.683091066466317	-0.934961814606001	-0.946649841686929	-0.414746645915579	2.93336948979223	0.339686616509229	1
Merged-chr11-32717040-1	chr11	32716940	32717140	+	948.0	f0_balb.idr	intron (NM_001271347, intron 3 of 12)	intron (NM_001271347, intron 3 of 12)	74485.0	NM_001271347	103583.0	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-52307216-3	chr1	52307099	52307299	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73967.0	NM_001113383	14660.0	Mm.398608	NM_001081081	ENSMUSG00000026103	Gls	6330442B14|AI314027|B230365M23Rik	glutaminase	protein-coding	5.70554638710475	5.8293265822015	5.43340280917938	4.98552452880908	6.63589617036866	6.54538555671446	6.79546923560722	6.37992318047358	1.17734309727553	1.01287854746889e-06	6.53361118953322e-05
Merged-chr9-120073310-4	chr9	120073187	120073387	+	948.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4991.0	NM_009987	13051.0	Mm.44065	NM_009987	ENSMUSG00000052336	Cx3cr1	-	chemokine (C-X3-C motif) receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-107316156-3	chr11	107316085	107316285	+	840.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 4 of 9)	MLT1A|LTR|ERVL-MaLR	-126804.0	NM_001161329	68979.0	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-75477438-4	chr1	75477375	75477575	+	831.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001001566, exon 2 of 4)	exon (NM_001001566, exon 2 of 4)	1996.0	NM_001001566	74241.0	Mm.260577	NM_001001565	ENSMUSG00000032997	Chpf	1700028N03Rik|AI414328|D1Bwg1363e	chondroitin polymerizing factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-80058395-2	chr8	80058295	80058495	+	967.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020259)	promoter-TSS (NM_020259)	-387.0	NM_020259	15245.0	Mm.254493	NM_020259	ENSMUSG00000064325	Hhip	Hhip1	Hedgehog-interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-3693213-4	chr7	3693107	3693307	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164205)	promoter-TSS (NM_001164205)	318.0	NM_029934	77582.0	Mm.397541	NM_029934	ENSMUSG00000035596	Mboat7	5730589L02Rik|BB1|Leng4|Lpiat|Lpiat1|mBB1	membrane bound O-acyltransferase domain containing 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-31369284-3	chr15	31369151	31369351	+	922.7000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1492.0	NM_027496	67434.0	Mm.102470	NM_026153	ENSMUSG00000022237	Ankrd33b	0610012A05Rik|3021401C12Rik|5730557B15Rik	ankyrin repeat domain 33B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126799265-4	chr7	126799169	126799369	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007438)	promoter-TSS (NM_007438)	-15.0	NM_007438	11674.0	Mm.275831	NM_007438	ENSMUSG00000030695	Aldoa	Aldo-1|Aldo1	aldolase A, fructose-bisphosphate	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-136894897-4	chr4	136894825	136895025	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_007572)	TTS (NM_007572)	-2011.0	NM_007574	12262.0	Mm.439732	NM_007574	ENSMUSG00000036896	C1qc	AI385742|C1qg|Ciqc	complement component 1, q subcomponent, C chain	protein-coding	4.22297328612969	4.92623008869148	4.27867905212301	4.93284458742675	5.36911462515854	5.77237143763473	5.63987678481842	5.65933414106334	1.16221253921297	0.000238213386280714	0.00616852706891225
Merged-chr3-89485359-3	chr3	89485259	89485459	+	781.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25788.0	NM_027348	68603.0	Mm.34242	NM_026784	ENSMUSG00000027952	Pmvk	1110011E12Rik|2900002L22Rik|AV001327|PMK|PMKA|PMKASE	phosphomevalonate kinase	protein-coding	2.31160123126905	1.3981165449213	2.14897618174718	2.84625705065676	2.330904058834	1.8956383929009	2.16570126263921	2.86077000065761	0.180455869553987	0.84368673456642	0.998431161219273
Merged-chr1-9991971-3	chr1	9991873	9992073	+	760.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145692, intron 5 of 8)	intron (NM_145692, intron 5 of 8)	17163.0	NR_110971	69312.0	Mm.386795	NM_027033	ENSMUSG00000025916	Ppp1r42	1700011J18Rik|4930418G15Rik|Lrrc67|TLRR	protein phosphatase 1, regulatory subunit 42	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31129051-4	chr14	31128958	31129158	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001308464)	promoter-TSS (NM_001308464)	-128.0	NM_001308464	66487.0	Mm.379116	NM_001308091	ENSMUSG00000058351	Smim4	2010107H07Rik|Gm41122	small integral membrane protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119091571-4	chr11	119091517	119091717	+	998.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5380.0	NM_007625	12418.0	Mm.268070	NM_007625	ENSMUSG00000039989	Cbx4	MPc2|PC2	chromobox 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-80456116-2	chr18	80456016	80456216	+	591.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026295, intron 4 of 12)	intron (NM_026295, intron 4 of 12)	13551.0	NM_026295	67655.0	Mm.312893	NM_026295	ENSMUSG00000033323	Ctdp1	4930563P03Rik|AW553592	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4163377-4	chr19	4163300	4163500	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021485)	promoter-TSS (NM_021485)	-17.0	NR_153659	58988.0	Mm.271937	NM_021485	ENSMUSG00000024830	Rps6kb2	S6K-beta-2|S6K2	ribosomal protein S6 kinase, polypeptide 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-111280717-2	chr14	111280617	111280817	+	704.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-394398.0	NM_198865	75409.0	Mm.235097	NM_029273	ENSMUSG00000033214	Slitrk5	2610019D03Rik	SLIT and NTRK-like family, member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-3645470-2	chr2	3645370	3645570	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-67988.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-58516512-4	chr13	58516409	58516609	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1H1|LTR|ERVL-MaLR	94368.0	NM_022317	114304.0	Mm.18188	NM_022317	ENSMUSG00000021553	Slc28a3	Cnt3	solute carrier family 28 (sodium-coupled nucleoside transporter), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64803216-4	chr5	64803146	64803346	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008453)	promoter-TSS (NM_008453)	-277.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-162517908-1	chr1	162517808	162518008	+	748.0	f1_c57bl6.idr	Intergenic	Intergenic	30437.0	NM_144877	71449.0	Mm.270569	NM_144877	ENSMUSG00000026694	Mettl13	5630401D24Rik	methyltransferase like 13	protein-coding	3.34684039670397	3.30850361978042	2.20602607239694	3.57466305214798	0.957800162589872	1.11979876053792	1.07116450631732	1.02678267484099	-6.43170871628381	1.5511480991993e-07	1.28645218162626e-05
Merged-chr1-150335333-3	chr1	150335233	150335433	+	756.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040603, intron 2 of 3)	intron (NR_040603, intron 2 of 3)	11438.0	NR_040603	75584.0	Mm.47709	NR_040603	ENSMUSG00000099447	2310030A07Rik	-	RIKEN cDNA 2310030A07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-51561751-3	chr3	51561634	51561834	+	873.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080793)	promoter-TSS (NM_080793)	-911.0	NM_080793	73251.0	Mm.192111	NM_080793	ENSMUSG00000037111	Setd7	1600028F23Rik|H3K4MT|KMT7|Set7|Set7/9|mKIAA1717	SET domain containing (lysine methyltransferase) 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134543840-2	chr6	134543740	134543940	+	882.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008514, intron 1 of 22)	intron (NM_008514, intron 1 of 22)	23073.0	NM_008514	16974.0	Mm.321990	NM_008514	ENSMUSG00000030201	Lrp6	C030016K15Rik|Cd|Gw|ska26|ska<m26Jus>|skax26	low density lipoprotein receptor-related protein 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-6601833-2	chr11	6601733	6601933	+	800.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081652, exon 2 of 8)	exon (NM_001081652, exon 2 of 8)	4221.0	NM_001081652	192950.0	Mm.337771	NM_001081652	ENSMUSG00000041073	Nacad	D230024G13Rik|mKIAA0363	NAC alpha domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32167169-3	chr2	32167057	32167257	+	603.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172661, intron 1 of 29)	intron (NM_172661, intron 1 of 29)	16009.0	NM_001159634	227723.0	Mm.25504	NM_172661	ENSMUSG00000039262	Prrc2b	5830434P21Rik|AI173903|Bat2l|Bat2l1|D430039P21|mKIAA0515	proline-rich coiled-coil 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4056039-2	chr19	4055939	4056139	+	737.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3408.0	NM_144869	225884.0	Mm.440201	NM_144869	ENSMUSG00000058216	Gstp3	-	glutathione S-transferase pi 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-117197307-3	chr2	117197231	117197431	+	784.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12204.0	NR_030440	732489.0		NR_030440	ENSMUSG00000076376	Mir674	Mirn674|mir-674|mmu-mir-674	microRNA 674	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-55166563-2	chr6	55166442	55166642	+	870.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	8448.0	NM_009349	21743.0	Mm.299	NM_009349	ENSMUSG00000003477	Inmt	Temt	indolethylamine N-methyltransferase	protein-coding	2.25513523973511	3.27911671661093	2.57715557738157	1.28589794828881	2.15527644610499	3.15916113048318	1.33049425869998	2.61706402511969	-0.114026002362931	0.907161869778917	0.998431161219273
Merged-chr12-35292173-4	chr12	35292058	35292258	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-97261.0	NR_030449	751520.0		NR_030449	ENSMUSG00000076253	Mir680-3	Mirn680-3	microRNA 680-3	ncRNA	4.26396085841957	3.14046375426712	2.766487950754	3.1518007887593	4.261646078496	2.34225783446447	3.4586420084481	3.5102657120302	0.136887345480254	0.834333866384493	0.998431161219273
Merged-chr12-40217240-2	chr12	40217140	40217340	+	572.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_013562, exon 3 of 12)	exon (NM_013562, exon 3 of 12)	5571.0	NR_035459	100316693.0		NR_035459	ENSMUSG00000089371	Mir1938	mir-1938|mmu-mir-1938	microRNA 1938	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-68131423-4	chr18	68131334	68131534	+	957.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172631, intron 3 of 5)	intron (NM_172631, intron 3 of 5)	-96512.0	NM_001357444	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-40098641-4	chr10	40098550	40098750	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 1 of 5)	RSINE1|SINE|B4	43604.0	NM_028247	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-8798113-2	chr15	8798013	8798213	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA6|LINE|L1	-87306.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-7932956-2	chr18	7932881	7933081	+	713.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	63268.0	NM_001360956	225131.0	Mm.204524	NM_153085	ENSMUSG00000024283	Wac	1110067P07Rik|A230035H12Rik|AI256735|AI256776|Wwp4	WW domain containing adaptor with coiled-coil	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124733179-4	chr6	124733085	124733285	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013545)	promoter-TSS (NM_013545)	-31.0	NM_013545	15170.0	Mm.271799	NM_013545	ENSMUSG00000004266	Ptpn6	70Z-SHP|Hcph|PTPTY-42|Ptp1C|SH-PTP1|SHP-1|hcp|me	protein tyrosine phosphatase, non-receptor type 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-133135132-3	chr1	133135051	133135251	+	805.1777950000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133819, intron 1 of 1)	intron (NM_133819, intron 1 of 1)	3985.0	NM_133819	108954.0	Mm.293628	NM_133819	ENSMUSG00000046062	Ppp1r15b	1810033K10Rik|AI606441|C530022L24Rik|CReP	protein phosphatase 1, regulatory (inhibitor) subunit 15b	protein-coding	1.36677127020858	1.15706168902328	0.629764119891889	1.07345675143433	0.611608196007172	0.849074992128237	1.24104454195439	0.800807539869181	-0.910305149817449	0.546033720555296	0.956861623060726
Merged-chr8-122980091-4	chr8	122979986	122980186	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 1 of 12)	intron (NM_001081379, intron 1 of 12)	62198.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-3642861-2	chr7	3642762	3642962	+	570.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_027328)	TTS (NM_027328)	-2407.0	NM_146176	232791.0	Mm.358731	NM_146176	ENSMUSG00000035632	Cnot3	A930039N10Rik	CCR4-NOT transcription complex, subunit 3	protein-coding	1.88162618217447	2.81391005942204	2.31107044297552	2.24723002181748	2.03186204362001	2.26988731619084	2.82409790157664	1.98610757906112	-0.0664627674607031	0.937529136997178	0.998431161219273
Merged-chr5-137293454-4	chr5	137293325	137293525	+	962.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_106196)	promoter-TSS (NR_106196)	-355.0	NR_106196	102466887.0		NR_106196	ENSMUSG00000099145	Mir8116	Gm27485|mmu-mir-8116	microRNA 8116	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-79569004-4	chr3	79568978	79569178	+	807.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_152118, exon 1 of 2)	non-coding (NR_152118, exon 1 of 2)	886.0	NR_152118	75879.0	Mm.410800	NR_152118		4930589L23Rik	-	RIKEN cDNA 4930589L23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-87653129-4	chr16	87653031	87653231	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45823.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88493090-4	chr3	88493001	88493201	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001002011, intron 1 of 11)	intron (NM_001002011, intron 1 of 11)	211.0	NM_019390	16905.0	Mm.243014	NM_019390	ENSMUSG00000028063	Lmna	Dhe	lamin A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-57122946-2	chr2	57122846	57123046	+	945.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001139509, intron 1 of 7)	intron (NM_001139509, intron 1 of 7)	1057.0	NM_001139509	18227.0	Mm.3507	NM_013613	ENSMUSG00000026826	Nr4a2	HZF-3|NOT|Nurr1|RNR-1|TINOR|TINUR	nuclear receptor subfamily 4, group A, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-154856289-4	chr4	154856185	154856385	+	861.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172878)	promoter-TSS (NM_172878)	85.0	NM_172878	242800.0	Mm.72944	NM_172878	ENSMUSG00000046637	Ttc34	4932418L02|B230396O12Rik	tetratricopeptide repeat domain 34	protein-coding	2.89299719424467	1.65343363137088	3.34288273979568	3.40565722521834	4.6750088689756	2.9397088544536	3.27935593773964	2.73707042580739	1.06159277135078	0.150477604064637	0.602589676101411
Merged-chr10-67096341-4	chr10	67096238	67096438	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178606, intron 1 of 7)	CpG	650.0	NM_001204915	28193.0	Mm.41272	NM_178606	ENSMUSG00000019873	Reep3	D10Ucla1	receptor accessory protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-127412658-1	chr3	127412558	127412758	+	684.0	f1_c57bl6.idr	intron (NM_001327938, intron 1 of 47)	B4A|SINE|B4	-3600.0	NM_001327939	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	2.3619880564307	1.42480240516945	2.57852108065351	2.83887754108699	2.21806901424924	1.15055452961816	1.38842376385332	1.09202903268378	-2.07815409541082	0.0601536999033178	0.36309990136288
Merged-chr17-27057927-2	chr17	27057827	27058027	+	611.708374	f1_balb.idr|f1_c57bl6.idr	intron (NM_080553, intron 1 of 57)	intron (NM_080553, intron 1 of 57)	623.0	NM_080553	16440.0	Mm.458106	NM_080553	ENSMUSG00000042644	Itpr3	IP3R 3|Ip3r3|Itpr-3|tf	inositol 1,4,5-triphosphate receptor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-32573746-2	chr4	32573646	32573846	+	703.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001109661, intron 3 of 4)	intron (NM_001109661, intron 3 of 4)	-2084.0	NR_026843	414068.0	Mm.389550	NR_026843	ENSMUSG00000086150	Bach2os	-	BTB and CNC homology 2, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-4527282-4	chr11	4527181	4527381	+	832.520813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028860, intron 4 of 17)	intron (NM_028860, intron 4 of 17)	67534.0	NM_028860	74302.0	Mm.425669	NM_028860	ENSMUSG00000034354	Mtmr3	1700092A20Rik|AI255150|AW557713|FYVE-DSP1|ZFYVE10|mKIAA0371	myotubularin related protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-40381553-1	chr8	40381453	40381653	+	683.0	f1_balb.idr	intron (NM_030110, intron 13 of 14)	intron (NM_030110, intron 13 of 14)	-42262.0	NM_178395	70546.0	Mm.34326	NM_178395	ENSMUSG00000039470	Zdhhc2	5730415P04Rik|6430583A19Rik|DHHC-2	zinc finger, DHHC domain containing 2	protein-coding	0.513061680691381	0.381541069251051	0.372989672819128	0.546243151255416	0.774642361384442	0.772111542986005	1.37587651199595	0.54969189439687	2.91254158605095	0.0894000668788088	1
Merged-chr12-25378262-4	chr12	25378178	25378378	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	249104.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	4.67755566472717	4.86769813766522	4.80246827359572	4.42777544517987	3.81039672240244	3.87331502501193	4.25608899843333	4.24520592971066	-0.827855182485645	0.0332169790722072	0.255363508057459
Merged-chr6-24990150-2	chr6	24990050	24990250	+	630.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-34025.0	NM_177013	319832.0	Mm.127446	NM_177013	ENSMUSG00000048022	Tmem229a	6332401O19Rik	transmembrane protein 229A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-80257757-1	chr12	80257657	80257857	+	799.666687	f0_balb.idr	intron (NM_134156, intron 1 of 20)	intron (NM_134156, intron 1 of 20)	2614.0	NM_134156	109711.0	Mm.253564	NM_134156	ENSMUSG00000015143	Actn1	3110023F10Rik|Actn1a	actinin, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70679581-2	chr11	70679481	70679681	+	675.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_178116, exon 10 of 23)	exon (NM_178116, exon 10 of 23)	8524.0	NM_001190376	216874.0	Mm.473726	NM_178116	ENSMUSG00000040712	Camta2	Kiaa0909-hp|mKIAA0909	calmodulin binding transcription activator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31382580-4	chr14	31382472	31382672	+	983.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347585, intron 3 of 7)	intron (NM_001347585, intron 3 of 7)	35105.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35265394-2	chr17	35265294	35265494	+	963.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_001267808, intron 7 of 11)	intron (NM_001267808, intron 7 of 11)	2271.0	NM_001267808	14980.0	Mm.439675	NM_001267808		H2-L	H-2L	histocompatibility 2, D region locus L	protein-coding	-1.50553143864187	-1.47326757745373	-1.48302443538069	-1.33751909122018	-1.50326657524235	-1.31763330787528	-1.48081569661027	-1.33608448637703	0.813043230782365	0.799669248714105	1
Merged-chr18-74882465-6	chr18	74882290	74882490	+	841.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	78873.0	NM_010720	16891.0	Mm.299647	NM_010720	ENSMUSG00000053846	Lipg	3110013K01Rik|EL|lipase|mEDL	lipase, endothelial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-92848447-4	chr7	92848356	92848556	+	796.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	25791.0	NM_001355126	74041.0	Mm.26468	NM_028729	ENSMUSG00000030641	Ddias	4632434I11Rik|noxin	DNA damage-induced apoptosis suppressor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19645828-2	chr7	19645728	19645928	+	691.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019649, intron 4 of 13)	intron (NM_019649, intron 4 of 13)	-16390.0	NM_009046	19698.0	Mm.1741	NM_009046	ENSMUSG00000002983	Relb	shep	avian reticuloendotheliosis viral (v-rel) oncogene related B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-22468903-2	chr9	22468803	22469003	+	705.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018739)	promoter-TSS (NM_018739)	-547.0	NM_018739	55934.0	Mm.38235	NM_018739	ENSMUSG00000032239	Rp9	PAP-1|Rp9h	retinitis pigmentosa 9 (human)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80825658-1	chr7	80825558	80825758	+	555.0	f1_balb.idr	Intergenic	Intergenic	-22327.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-8411391-4	chr15	8411278	8411478	+	773.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201232, intron 1 of 45)	intron (NM_201232, intron 1 of 45)	33085.0	NM_027707	71175.0	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	NIPBL cohesin loading factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-60536581-4	chr11	60536474	60536674	+	950.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-1109.0	NM_172943	268420.0	Mm.262056	NM_172943	ENSMUSG00000042650	Alkbh5	AW050020|AW215868|Abh5|E130207K11|Ofoxd	alkB homolog 5, RNA demethylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-59555195-4	chr14	59555084	59555284	+	932.866699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	42775.0	NM_001168537	71891.0	Mm.439850	NM_027986	ENSMUSG00000021982	Cdadc1	2310010M10Rik|AI449174|AI463398|BB130816|NYD-SP15	cytidine and dCMP deaminase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83739417-3	chr11	83739328	83739528	+	856.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7512.0	NM_183249	66107.0	Mm.902	NM_183249	ENSMUSG00000051748	Wfdc21	1100001G20Rik|Wdnm1-like	WAP four-disulfide core domain 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-164405604-4	chr1	164405506	164405706	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138314, intron 13 of 13)	intron (NM_138314, intron 13 of 13)	52749.0	NM_009721	11931.0	Mm.4550	NM_009721	ENSMUSG00000026576	Atp1b1	Atp4b|Atpb|Atpb-1|NKbeta1	ATPase, Na+/K+ transporting, beta 1 polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-111439381-2	chr8	111439293	111439493	+	592.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10807.0	NR_105819									0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-45093968-3	chr9	45093869	45094069	+	878.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005421, intron 6 of 10)	(TG)n|Simple_repeat|Simple_repeat	14786.0	NM_001005421	270152.0	Mm.190461	NM_001005421	ENSMUSG00000048534	Jaml	AMICA|Amica1|Crea7|Gm638	junction adhesion molecule like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-56396680-2	chr19	56396580	56396780	+	559.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007611)	promoter-TSS (NM_007611)	-449.0	NM_007611	12369.0	Mm.35687	NM_007611	ENSMUSG00000025076	Casp7	AI314680|CMH-1|ICE-IAP3|Mch3|caspase-7|mCASP-7	caspase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-170247908-3	chr2	170247829	170248029	+	564.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-105254.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-5800040-3	chr13	5799936	5800136	+	761.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58056.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-82061652-2	chr13	82061552	82061752	+	740.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	278405.0	NM_007684	12626.0	Mm.12481	NM_007684	ENSMUSG00000021537	Cetn3	MmCEN3	centrin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30827219-2	chr2	30827119	30827319	+	908.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133346, intron 1 of 5)	intron (NM_133346, intron 1 of 5)	1081.0	NM_133346	72323.0	Mm.27656	NM_133346	ENSMUSG00000039483	Asb6	2510004M11Rik|AA409356	ankyrin repeat and SOCS box-containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-20373000-4	chr16	20372897	20373097	+	974.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013790, intron 16 of 29)	intron (NM_013790, intron 16 of 29)	-47593.0	NM_183158	224044.0	Mm.276400	NM_183158	ENSMUSG00000022818	Cyp2ab1	EG224044|F730023N20	cytochrome P450, family 2, subfamily ab, polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69429544-4	chr11	69429449	69429649	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081330, intron 76 of 85)	intron (NM_001081330, intron 76 of 85)	-15874.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-148958895-3	chr3	148958804	148959004	+	854.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4269.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	0.828098157470418	0.275499392751218	0.270623704701125	0.266895539868789	0.388625799151904	0.27660519842185	0.686598714972226	0.83248963023999	0.857459388319021	0.663014702250788	1
Merged-chr15-81013303-2	chr15	81013203	81013403	+	760.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_153049, exon 13 of 13)	exon (NM_153049, exon 13 of 13)	35538.0	NM_134091	105835.0	Mm.274943	NM_134091	ENSMUSG00000042303	Sgsm3	1810012I01Rik|AI428557|BB175482|Cip85|R75178|RUSC3|Rutbc3	small G protein signaling modulator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-154402977-2	chr2	154402877	154403077	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009228, intron 2 of 7)	intron (NM_009228, intron 2 of 7)	5107.0	NM_009228	20648.0	Mm.1541	NM_009228	ENSMUSG00000027488	Snta1	AW228934|Snt1	syntrophin, acidic 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-57085205-3	chr18	57085105	57085305	+	961.355591	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47885.0	NM_001001979	70417.0	Mm.297863	NM_001001979	ENSMUSG00000024593	Megf10	3000002B06Rik|Gm331	multiple EGF-like-domains 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-7382495-4	chr19	7382390	7382590	+	631.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045703)	promoter-TSS (NR_045703)	-513.0	NR_045703	654802.0	Mm.414924	NR_045703		1700105P06Rik	-	RIKEN cDNA 1700105P06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-8966312-2	chr19	8966212	8966412	+	883.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026007)	promoter-TSS (NM_026007)	-729.0	NM_026007	67160.0	Mm.247762	NM_026007	ENSMUSG00000071644	Eef1g	2610301D06Rik|AA407312|EF1G	eukaryotic translation elongation factor 1 gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-100613347-3	chr15	100613193	100613393	+	757.666687	f1_balb.idr|f1_c57bl6.idr	TTS (NR_045701)	TTS (NR_045701)	1817.0	NR_045701	78445.0	Mm.44383	NR_045701	ENSMUSG00000097093	C330013E15Rik	-	RIKEN cDNA C330013E15 gene	ncRNA	1.46371248525176	1.7849509652321	1.98460270121699	1.81205809079087	1.84504860490318	1.94287819980404	1.16549466497566	2.30674596151127	0.332545598205641	0.752877009842691	0.998431161219273
Merged-chr17-26245436-2	chr17	26245397	26245597	+	757.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19A|LTR|ERVK	-1255.0	NM_001206335	106581.0	Mm.28844	NM_207217	ENSMUSG00000024187	Fam234a	Itfg3	family with sequence similarity 234, member A	protein-coding	0.75838100623393	0.482152977063258	1.57214775041997	0.946782342662686	0.452588796888812	0.889762604596216	0.474213013110008	0.816448565170019	-1.70320879075468	0.298889542607539	0.800409222377854
Merged-chr16-4906887-2	chr16	4906787	4906987	+	684.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357062, intron 1 of 17)	MLT1C|LTR|ERVL-MaLR	20787.0	NM_001357061	17237.0	Mm.291326	NM_029657	ENSMUSG00000022517	Mgrn1	2610042J20Rik|mKIAA0544|md|nc	mahogunin, ring finger 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-27682815-4	chr15	27682690	27682890	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1248.0	NM_001242423	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-10390896-4	chr17	10390792	10390992	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65324.0	NR_077239	319750.0	Mm.383485	NR_077237	ENSMUSG00000089633	A230009B12Rik	-	RIKEN cDNA A230009B12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118821745-3	chr9	118821617	118821817	+	810.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 4 of 13)	intron (NM_001113514, intron 4 of 13)	-104819.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	1.24401113120474	-0.0951617179822401	-0.103306186785296	-0.109685474746866	0.0667497121473893	-0.0933444675161715	-0.101498059018431	0.272372424685017	-2.08904799745441	0.334975221520177	1
Merged-chr10-127585829-2	chr10	127585729	127585929	+	801.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 15 of 88)	L2|LINE|L2	35319.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-13409931-4	chr2	13409852	13410052	+	923.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081084, intron 27 of 66)	intron (NM_001081084, intron 27 of 66)	81924.0	NM_001081084	65969.0	Mm.313915	NM_001081084	ENSMUSG00000026726	Cubn	AA408369|AL022750|D2Wsu88e	cubilin (intrinsic factor-cobalamin receptor)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-31320075-2	chr18	31319975	31320175	+	718.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2947.0	NM_009065	19762.0	Mm.5163	NM_009065	ENSMUSG00000057455	Rit2	RIBA|Rin|Roc2	Ras-like without CAAX 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-108758091-4	chr12	108757999	108758199	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-35212.0	NM_009537	22632.0	Mm.3868	NM_009537	ENSMUSG00000021264	Yy1	AW488674|NF-E1	YY1 transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-106933883-4	chr1	106933781	106933981	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027971)	promoter-TSS (NM_027971)	-568.0	NM_027971	71869.0	Mm.321740	NM_027971	ENSMUSG00000059956	Serpinb12	2300003F07Rik|4833409F13Rik	serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), member 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-31152327-4	chr2	31152194	31152394	+	983.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040334)	promoter-TSS (NR_040334)	-3.0	NR_040334	320973.0	Mm.384284	NR_040334		D330023K18Rik	-	RIKEN cDNA D330023K18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-50443730-4	chr3	50443675	50443875	+	947.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011990)	promoter-TSS (NM_011990)	-162.0	NM_011990	26570.0	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-25441517-2	chr10	25441417	25441617	+	799.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013511, intron 1 of 19)	intron (NM_013511, intron 1 of 19)	33149.0	NM_013511	13822.0	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-173659702-4	chr2	173659604	173659804	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027957)	promoter-TSS (NR_027957)	-141.0	NM_024436	19334.0	Mm.275304	NM_024436	ENSMUSG00000027519	Rab22a	3732413A17Rik|AI662177|AW319644|AW550514|E130120E14Rik|Rab22	RAB22A, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-101155743-4	chr4	101155656	101155856	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146145, intron 22 of 24)	intron (NM_146145, intron 22 of 24)	86718.0	NM_183024	242570.0	Mm.185636	NM_183024	ENSMUSG00000035275	Raver2	A430091O22Rik	ribonucleoprotein, PTB-binding 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120504150-2	chr8	120504050	120504250	+	754.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_198671, intron 1 of 15)	intron (NM_198671, intron 1 of 15)	15284.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-49906325-4	chr16	49906201	49906401	+	859.883301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010581, intron 8 of 9)	intron (NM_010581, intron 8 of 9)	-49529.0	NR_153658	100503490.0	Mm.72499	NR_153658		Gm19723	-	predicted gene, 19723	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-149982639-2	chr3	149982539	149982739	+	844.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	707902.0	NR_040591	381482.0	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-91108359-1	chr8	91108259	91108459	+	775.0	f0_balb.idr	intron (NM_011250, intron 17 of 21)	L1M4b|LINE|L1	25380.0	NM_001358938	14339.0	Mm.324588	NM_010241	ENSMUSG00000031667	Aktip	AL023020|Fif|Ft|Ft1|Fts	thymoma viral proto-oncogene 1 interacting protein	protein-coding	0.389973865460969	1.1432806547124	0.413497543795019	1.50025609083543	0.573422328285333	1.1560754495843	0.415972403765104	0.406296794342579	-1.25869201497585	0.476163994790389	0.927406040011522
Merged-chr1-64875919-3	chr1	64875826	64876026	+	885.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039493, intron 5 of 7)	L2a|LINE|L2	80898.0	NM_001039493	241075.0	Mm.239534	NM_175509	ENSMUSG00000051344	Plekhm3	9430067K14Rik|A230102O09Rik|AI449570|DAPR|Plekhm1l	pleckstrin homology domain containing, family M, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-33042460-2	chr14	33042360	33042560	+	563.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001146022, intron 38 of 58)	intron (NM_001146022, intron 38 of 58)	51078.0	NM_026253	67580.0	Mm.46115	NM_026253	ENSMUSG00000041673	Lrrc18	4930442L21Rik|MTLR1	leucine rich repeat containing 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171619213-4	chr1	171619117	171619317	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-11807.0	NM_001277968	17085.0	Mm.560	NM_008534	ENSMUSG00000004707	Ly9	AI893573|CD229|Lgp100|Ly-9|SLAMF3|T100	lymphocyte antigen 9	protein-coding	6.95054879549123	6.52183458358633	6.86977911659053	7.31290673283859	7.08706858073831	6.39657115814225	6.8732948577346	7.22610238310226	-0.0113145250232036	0.957928666886748	0.998431161219273
Merged-chr9-90184285-2	chr9	90184299	90184499	+	822.0	f0_c57.idr|f1_c57bl6.idr	intron (NM_001003911, intron 8 of 23)	intron (NM_001003911, intron 8 of 23)	21421.0	NM_001311115	108153.0	Mm.102141	NM_001003911	ENSMUSG00000032363	Adamts7	ADAM-TS7|ADAMTS7B	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 7	protein-coding	-1.28025741253843	-1.25296595648262	-1.2630259255951	-1.2712894837512	-1.0104656993792	-1.25078591920978	-1.26074856909628	-0.971423026503385	2.3133467066417	0.490836719666531	1
Merged-chr2-155819257-4	chr2	155819169	155819369	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015528)	promoter-TSS (NR_015528)	-66.0	NR_015528	613262.0	Mm.330707	NR_015528	ENSMUSG00000074649	BC029722	-	cDNA sequence BC029722	ncRNA	7.39551033463208	7.09180755571656	7.45968803787007	7.29137907874726	7.63777997371471	7.78031282023522	7.32279891535328	7.46215341113947	0.251437231919355	0.112187591145745	0.524562244180301
Merged-chr18-19887163-2	chr18	19887063	19887263	+	607.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2B2|LINE|L1	114934.0	NM_007882	13507.0	Mm.89935	NM_007882	ENSMUSG00000059898	Dsc3	5430426I24Rik	desmocollin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-116133068-2	chr9	116132968	116133168	+	796.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_029575, intron 1 of 6)	intron (NM_029575, intron 1 of 6)	42295.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	-0.877815285113309	-0.861448991514542	-0.866860238517207	-0.870918236687422	-0.876776165120875	0.273666448448506	-0.865712966576204	-0.870204216660929	3.91627051190482	0.153879023975359	1
Merged-chr13-5804403-3	chr13	5804312	5804512	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53680.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-43519729-2	chr19	43519570	43519770	+	802.950012	f1_balb.idr|f1_c57bl6.idr	intron (NM_010324, intron 1 of 8)	intron (NM_010324, intron 1 of 8)	4935.0	NM_010324	14718.0	Mm.19039	NM_010324	ENSMUSG00000025190	Got1	AI789014|Got-1|cAspAT|cCAT	glutamic-oxaloacetic transaminase 1, soluble	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-103962421-2	chr11	103962321	103962521	+	659.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-4304.0	NM_001304574	11841.0	Mm.5061	NM_007477	ENSMUSG00000062421	Arf2	-	ADP-ribosylation factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-103354226-4	chr11	103354129	103354329	+	961.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205236, intron 3 of 17)	intron (NM_001205236, intron 3 of 17)	9463.0	NM_183288	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	2.42271660895456	1.22009356242883	1.18803002312957	2.95560332426041	2.58657792788589	1.73501678407654	2.01463851318838	1.7984653510772	-0.250747250153593	0.816506884917754	0.998431161219273
Merged-chr13-106945720-4	chr13	106945620	106945820	+	927.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1409.0	NM_025447	66254.0	Mm.9563	NM_025447	ENSMUSG00000021692	Dimt1	1500031M22Rik|AV111347|Dimt1l	DIM1 dimethyladenosine transferase 1-like (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-115230741-1	chr13	115230641	115230841	+	603.5	f0_balb.idr	Intergenic	Intergenic	-128777.0	NM_001033228	109700.0	Mm.317280	NM_001033228	ENSMUSG00000042284	Itga1	CD49A|E130012M19Rik|Vla1	integrin alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-34763757-2	chr2	34763657	34763857	+	772.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-8333.0	NM_001163434	14828.0	Mm.330160	NM_022310	ENSMUSG00000026864	Hspa5	AL022860|AU019543|Bip|D2Wsu141e|D2Wsu17e|Grp78|Hsce70|SEZ-7|Sez7|baffled|mBiP	heat shock protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-140957982-4	chr4	140957883	140958083	+	951.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045911)	promoter-TSS (NR_045911)	-81.0	NR_045911	100126227.0	Mm.404073	NR_045911	ENSMUSG00000087698	Gm13031	-	predicted gene 13031	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-68441156-4	chr11	68441050	68441250	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177320, intron 1 of 18)	intron (NM_177320, intron 1 of 18)	9025.0	NM_177320	320207.0	Mm.244960	NM_177320	ENSMUSG00000020901	Pik3r5	AV230647|F730038I15Rik|Foap2|p101	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-121327382-2	chr1	121327282	121327482	+	837.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178082, intron 1 of 5)	intron (NM_178082, intron 1 of 5)	296.0	NM_001271531	72999.0	Mm.27136	NM_133748	ENSMUSG00000003721	Insig2	2900053I11Rik|C730043J18Rik|Insig-2	insulin induced gene 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-113708106-5	chr9	113707952	113708152	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001164677, exon 1 of 18)	exon (NM_001164677, exon 1 of 18)	207.0	NM_001164678	18571.0	Mm.29816	NM_011052	ENSMUSG00000032504	Pdcd6ip	AI480591|AW544830|Aip1|Alix|C76364|Eig2|mKIAA1375	programmed cell death 6 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-24716440-2	chr8	24716340	24716540	+	833.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001324489, intron 4 of 21)	RSINE1|SINE|B4	9412.0	NM_009619	11497.0	Mm.5168	NM_009619	ENSMUSG00000031553	Adam3	Cyrn1|Taz83|tMDC	a disintegrin and metallopeptidase domain 3 (cyritestin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166608998-2	chr2	166608898	166609098	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 10 of 39)	intron (NM_177782, intron 10 of 39)	44476.0	NR_152154	433503.0	Mm.491336	NR_152154		Gm29679	-	predicted gene, 29679	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91597026-2	chr16	91596926	91597126	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030018, intron 1 of 6)	intron (NM_030018, intron 1 of 6)	654.0	NM_030018	77975.0	Mm.290341	NM_030018	ENSMUSG00000022964	Tmem50b	AU015466|AU019872|B230114J08Rik	transmembrane protein 50B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21807174-2	chr9	21807074	21807274	+	652.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_177030, intron 41 of 49)	RSINE1|SINE|B4	2826.0	NR_106051	102465657.0		NR_106051	ENSMUSG00000098473	Mir7083	Gm27888|mmu-mir-7083	microRNA 7083	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132488777-4	chr4	132488662	132488862	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21694.0	NM_144907	230784.0	Mm.23608	NM_144907	ENSMUSG00000028893	Sesn2	HI95|SEST2|Ses2	sestrin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-94999095-2	chr8	94998995	94999195	+	701.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_018882, intron 1 of 13)	intron (NM_018882, intron 1 of 13)	14696.0	NM_018882	14766.0	Mm.290834	NM_018882	ENSMUSG00000031785	Adgrg1	Cyt28|Gpr56|TM7LN4|TM7XN1	adhesion G protein-coupled receptor G1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-83564351-4	chr15	83564259	83564459	+	834.479187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009775, intron 1 of 3)	intron (NM_009775, intron 1 of 3)	786.0	NM_009775	12257.0	Mm.1508	NM_009775	ENSMUSG00000041736	Tspo	Bzrp|IBP|PBR|Tspo1	translocator protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-108380415-4	chr4	108380317	108380517	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001099303, intron 1 of 2)	intron (NM_001099303, intron 1 of 2)	3238.0	NM_001099303	545667.0	Mm.380025	NM_001099303	ENSMUSG00000059816	Fam159a	Shisal2a	family with sequence similarity 159, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25689334-4	chr7	25689216	25689416	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011577, intron 1 of 6)	CpG	2314.0	NM_011577	21803.0	Mm.248380	NM_011577	ENSMUSG00000002603	Tgfb1	TGF-beta1|TGFbeta1|Tgfb|Tgfb-1	transforming growth factor, beta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-127608738-4	chr5	127608635	127608835	+	984.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133895, intron 2 of 7)	intron (NM_133895, intron 2 of 7)	8657.0	NM_133895	100561.0	Mm.28506	NM_133895	ENSMUSG00000029416	Slc15a4	AA987064|AW742963|C130069N12Rik|PHT1|PTR4	solute carrier family 15, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-86447213-6	chr6	86447123	86447323	+	937.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001243741, intron 3 of 9)	intron (NM_001243741, intron 3 of 9)	8577.0	NM_001243741	232196.0	Mm.404040	NM_146170	ENSMUSG00000046679	C87436	-	expressed sequence C87436	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-54952558-4	chr15	54952431	54952631	+	877.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_155354)	promoter-TSS (NR_155354)	-417.0	NR_155354	102638507.0	Mm.364574	NR_155354		Gm26684	-	predicted gene, 26684	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-99212335-3	chr5	99212204	99212404	+	869.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40623.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-30229133-2	chr17	30229033	30229233	+	704.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172618, intron 9 of 11)	intron (NM_172618, intron 9 of 11)	167047.0	NR_030688	623169.0	Mm.440508	NR_030688		Gm6402	EG623169	ribosomal protein S17 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-121398694-3	chr5	121398584	121398784	+	780.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172722, intron 1 of 23)	intron (NM_172722, intron 1 of 23)	702.0	NM_172722	231713.0	Mm.33919	NM_172722	ENSMUSG00000042719	Naa25	4833422K13Rik|A630046C11|AI450868|C330023M02Rik|Mdm20	N(alpha)-acetyltransferase 25, NatB auxiliary subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-25635331-2	chr14	25635231	25635431	+	586.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 6 of 23)	intron (NM_183208, intron 6 of 23)	31818.0	NM_001309430	100188919.0	Mm.473810	NM_001309430		Gm45915	Israa	predicted gene, 45915	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-11637288-4	chr2	11637189	11637389	+	967.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5503.0	NM_008367	16184.0	Mm.915	NM_008367	ENSMUSG00000026770	Il2ra	CD25|Il2r|Ly-43	interleukin 2 receptor, alpha chain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-142442847-4	chr7	142442765	142442965	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009405, intron 1 of 5)	intron (NM_009405, intron 1 of 5)	397.0	NM_009405	21953.0	Mm.39469	NM_009405	ENSMUSG00000031097	Tnni2	-	troponin I, skeletal, fast 2	protein-coding	6.28675029157073	6.00953628195305	6.25468060515376	6.06652130060315	5.7868094353389	5.58820398769637	5.51863590354486	5.37141587200274	-0.648390985936391	0.00634732491386222	0.0794939502260114
Merged-chr16-78183709-2	chr16	78183609	78183809	+	586.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER34A|LTR|ERV1	71745.0	NR_045698	100503619.0	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-98987126-2	chr9	98987026	98987226	+	977.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011810, intron 1 of 4)	intron (NM_011810, intron 1 of 4)	753.0	NM_001122851	23873.0	Mm.74605	NM_011810	ENSMUSG00000032463	Faim	-	Fas apoptotic inhibitory molecule	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-88698074-2	chr8	88697997	88698197	+	808.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001128170, intron 1 of 17)	intron (NM_001128170, intron 1 of 17)	1069.0	NM_001128171	74256.0	Mm.490395	NM_173369	ENSMUSG00000036712	Cyld	2010013M14Rik|2900009M21Rik|C130039D01Rik|CDMT|CYLD1|EAC|mKIAA0849	CYLD lysine 63 deubiquitinase	protein-coding	1.49210728229372	0.938676467450485	1.33448774718183	2.06339117240226	1.50549292669504	1.19042228969003	0.924274122535936	2.15032507238833	0.0354770579241692	0.977780271430861	0.998431161219273
Merged-chr13-110541518-4	chr13	110541429	110541629	+	992.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	146485.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	3.4108956766877	3.54137252063178	3.09367759928997	2.24475757401536	2.29741813094856	3.63855351028635	3.29656670807907	2.2571933707358	-0.25328814985012	0.723056155734905	0.998431161219273
Merged-chr5-34243512-3	chr5	34243432	34243632	+	647.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001015039, intron 1 of 12)	intron (NM_001015039, intron 1 of 12)	44792.0	NM_001015039	231125.0	Mm.113388	NM_001015039	ENSMUSG00000037224	Zfyve28	9630058O20Rik|Gm146|mKIAA1643	zinc finger, FYVE domain containing 28	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-66199487-2	chr7	66199387	66199587	+	767.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	89972.0	NM_001081163	269941.0	Mm.333916	NM_001081163	ENSMUSG00000032640	Chsy1	mKIAA0990	chondroitin sulfate synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-53329432-1	chr15	53329332	53329532	+	592.0	f0_balb.idr	intron (NM_010162, intron 1 of 10)	MTD|LTR|ERVL-MaLR	16751.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-38971777-2	chr6	38971677	38971877	+	747.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 3 of 12)	ORR1B1|LTR|ERVL-MaLR	52791.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-160620228-7	chr2	160620099	160620299	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25698.0	NM_009408	21969.0	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127421149-4	chr10	127421037	127421237	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001168293, exon 1 of 24)	5' UTR (NM_001168293, exon 1 of 24)	270.0	NM_001359243	71750.0	Mm.29342	NM_027900	ENSMUSG00000025404	R3hdm2	1300003K24Rik|AU041262|mKIAA1002	R3H domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76658237-2	chr15	76658137	76658337	+	871.2999880000001	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001276322, exon 3 of 3)	3' UTR (NM_001276322, exon 3 of 3)	-1336.0	NM_001276321	54151.0	Mm.247752	NM_019396	ENSMUSG00000053929	Cyhr1	1110031M01Rik|AU042374|Chrp	cysteine and histidine rich 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-44065864-4	chr4	44065762	44065962	+	890.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001190414, intron 2 of 11)	intron (NM_001190414, intron 2 of 11)	6855.0	NM_001357539	50798.0	Mm.256718	NM_015828	ENSMUSG00000028479	Gne	2310066H07Rik|DMRV|GLCNE|IBM2|NM|Uae1	glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-102894535-2	chr13	102894435	102894635	+	708.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175171, intron 4 of 28)	intron (NM_175171, intron 4 of 28)	134280.0	NR_130171	76624.0	Mm.426384	NR_130171	ENSMUSG00000091906	1700099I09Rik	-	RIKEN cDNA 1700099I09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-83975991-2	chr17	83975891	83976091	+	544.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22561.0	NR_130994	78148.0	Mm.243918	NR_130994		8430430B14Rik	-	RIKEN cDNA 8430430B14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30434386-2	chr7	30434286	30434486	+	810.333374	f1_balb.idr|f1_c57bl6.idr	TTS (NM_007467)	TTS (NM_007467)	11111.0	NM_172142	243910.0	Mm.386878	NM_172142	ENSMUSG00000036931	Nfkbid	I-kappa-B-delta|IkappaBNS|ikB-delta	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-135503802-4	chr2	135503704	135503904	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	79416.0	NR_015544	320684.0	Mm.421433	NR_015544	ENSMUSG00000085631	9630028H03Rik	-	RIKEN cDNA 9630028H03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-48270906-4	chr17	48270816	48271016	+	919.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033922, intron 4 of 5)	intron (NM_001033922, intron 4 of 5)	6621.0	NM_001163796	224840.0	Mm.131234	NM_172623	ENSMUSG00000051682	Treml4	5031403H21Rik|BB137214|IDCP1|TLT-4|TLT4|Treml3	triggering receptor expressed on myeloid cells-like 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-66342501-2	chr7	66342443	66342643	+	639.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_146191, intron 3 of 33)	B3|SINE|B2	39181.0	NR_106024	102465640.0		NR_106024	ENSMUSG00000098353	Mir7057	Gm27550|mmu-mir-7057	microRNA 7057	ncRNA	3.00456782149708	2.58459790148252	2.76568854241986	2.56618701965001	3.29476147830971	3.10620661597245	3.1899474776179	3.09552087362203	0.781707051326127	0.218370668379943	0.709517407263735
Merged-chr7-106759004-4	chr7	106758903	106759103	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5617.0	NM_146602	258595.0	Mm.377585	NM_146602	ENSMUSG00000059087	Olfr698	MOR283-3	olfactory receptor 698	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-69197892-4	chr17	69197786	69197986	+	926.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355736, intron 1 of 21)	intron (NM_001355736, intron 1 of 21)	38530.0	NM_001355735	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-102085442-1	chr5	102085342	102085542	+	554.0	f1_balb.idr	Intergenic	MT2A|LTR|ERVL	-15521.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	1.65432558396112	0.588425015550607	0.567953802814457	0.551562111035701	0.527408784201154	2.21266696129005	1.86602929888289	0.554465562203529	1.79748797320407	0.575686995460712	0.965286201225318
Merged-chr16-95707173-6	chr16	95707035	95707235	+	893.4833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011809, intron 2 of 9)	intron (NM_011809, intron 2 of 9)	4728.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135994838-4	chr5	135994733	135994933	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023742)	promoter-TSS (NM_023742)	33.0	NM_001256098	74198.0	Mm.275574	NM_023742	ENSMUSG00000004947	Dtx2	2610524D08Rik|AA408415|AU022494|Deltex2	deltex 2, E3 ubiquitin ligase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-20540626-2	chr16	20540547	20540747	+	599.25	f0_balb.idr|f1_c57bl6.idr	intron (NM_009679, intron 4 of 10)	intron (NM_009679, intron 4 of 10)	5167.0	NM_009679	11773.0	Mm.18946	NM_009679	ENSMUSG00000022841	Ap2m1	-	adaptor-related protein complex 2, mu 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-125479834-2	chr5	125479734	125479934	+	634.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030210, intron 1 of 17)	MIR|SINE|MIR	3961.0	NM_030210	78894.0	Mm.431573	NM_030210	ENSMUSG00000029482	Aacs	2210408B16Rik|SUR5	acetoacetyl-CoA synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-97083737-2	chr7	97083637	97083837	+	964.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162477, intron 1 of 9)	ID_B1|SINE|B4	1986.0	NM_010248	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	-1.5045159923713	-1.47268381943764	-1.33084429950182	-1.18728580688747	-1.50228143268905	-1.47059775750573	-1.48013094527647	-1.48880206050196	-1.99014949493952	0.564735426649863	1
Merged-chr15-91253197-3	chr15	91253097	91253297	+	696.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	-61190.0	NM_001358967	26874.0	Mm.295456	NM_011994	ENSMUSG00000055782	Abcd2	ABC39|ALDL1|ALDR|ALDRP	ATP-binding cassette, sub-family D (ALD), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131270345-3	chr1	131270223	131270423	+	900.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019777, intron 10 of 21)	intron (NM_019777, intron 10 of 21)	9240.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-34163244-3	chr18	34163136	34163336	+	769.266663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57748.0	NM_007462	11789.0	Mm.384171	NM_007462	ENSMUSG00000005871	Apc	AI047805|AU020952|AW124434|CC1|Min|mAPC	adenomatosis polyposis coli	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124352410-3	chr5	124352326	124352526	+	703.027771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013812, intron 1 of 3)	intron (NM_013812, intron 1 of 3)	2202.0	NM_013812	13445.0	Mm.391838	NM_013812	ENSMUSG00000029394	Cdk2ap1	Apc10|Cdkap1|DORC1|Doc1|ST19|doc-1|p12	CDK2 (cyclin-dependent kinase 2)-associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-95563795-4	chr13	95563654	95563854	+	789.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38514.0	NM_007974	14063.0	Mm.1614	NM_007974	ENSMUSG00000021678	F2rl1	Gpcr11|PAR-2|Par2	coagulation factor II (thrombin) receptor-like 1	protein-coding	3.03350545066717	3.06608255255449	2.96432955699231	1.51619511638525	2.57144684170538	2.88326837540698	2.67344629717992	2.9825890699251	-0.000179501920708004	0.999814802104054	0.999947950589669
Merged-chr10-111163902-3	chr10	111163791	111163991	+	923.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175489)	promoter-TSS (NM_175489)	-911.0	NM_001003717	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-93241272-2	chr13	93241180	93241380	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48863.0	NM_001361537	100715.0	Mm.242865	NM_133905	ENSMUSG00000042167	Papd4	8030446C20Rik|AI649009|GLD-2|Gld2	PAP associated domain containing 4	protein-coding	0.277491193924715	1.20263797949971	-0.0338263167260564	-0.0402727668280308	-0.0495236261894169	0.408477136131839	-0.0319980907741815	-0.039140758407743	-2.49991905656253	0.247269633688412	1
Merged-chr16-91459576-2	chr16	91459476	91459676	+	668.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-5528.0	NR_077219	100503120.0	Mm.387130	NR_077219	ENSMUSG00000084866	A930006K02Rik	-	RIKEN cDNA A930006K02 gene	ncRNA	-0.632973229346855	-0.621993181602012	-0.625593153155619	-0.62836886800414	-0.632288588996241	-0.114837605794168	-0.624799371546395	-0.0840103519032747	3.37462591379059	0.228834980983209	1
Merged-chr15-99026426-4	chr15	99026343	99026543	+	955.7666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-3448.0	NM_009448	22146.0	Mm.88212	NM_009448	ENSMUSG00000043091	Tuba1c	M[a]6|Tuba6	tubulin, alpha 1C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-88500060-4	chr5	88499964	88500164	+	967.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017468, intron 9 of 9)	intron (NM_017468, intron 9 of 9)	12089.0	NM_017468	13801.0	Mm.8014	NM_017468	ENSMUSG00000029286	Enam	abte	enamelin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-57017564-4	chr17	57017462	57017662	+	921.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6274.0	NM_133801	98053.0	Mm.24632	NM_133801	ENSMUSG00000002658	Gtf2f1	2810405L04Rik|C76800|RAP74	general transcription factor IIF, polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-117123023-5	chr2	117122935	117123135	+	978.2333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001277256, intron 1 of 4)	intron (NM_001277256, intron 1 of 4)	1964.0	NM_033524	114715.0	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-8981855-2	chr19	8981755	8981955	+	558.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7429.0	NR_104460	66395.0	Mm.203866	NM_009643	ENSMUSG00000069833	Ahnak	DY6	AHNAK nucleoprotein (desmoyokin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-170632556-4	chr1	170632462	170632662	+	828.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11970.0	NM_177068	320078.0	Mm.287131	NM_177068	ENSMUSG00000038463	Olfml2b	1110018N05Rik|4832415H08Rik|AI467542	olfactomedin-like 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-114771612-2	chr8	114771512	114771712	+	595.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019573, intron 8 of 8)	intron (NM_019573, intron 8 of 8)	331960.0	NM_019573	80707.0	Mm.440420	NM_019573	ENSMUSG00000004637	Wwox	5330426P09Rik|9030416C10Rik|WOX1	WW domain-containing oxidoreductase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-148679862-1	chr4	148679762	148679962	+	711.0	f1_balb.idr	Intergenic	Intergenic	36545.0	NM_001085505	230909.0	Mm.332067	NM_001085505	ENSMUSG00000070577	Gm572	b2b1167Clo	predicted gene 572	protein-coding	1.41954562994532	0.926469855445862	1.1653477167092	0.879356468747335	2.30584934061694	2.47032191059663	2.29166041423962	0.883078687062312	3.11680841489129	0.0160421910638278	0.152033339955613
Merged-chr13-113634127-2	chr13	113634027	113634227	+	579.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15563.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-63960568-4	chr9	63960505	63960705	+	985.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008542, intron 3 of 3)	intron (NM_008542, intron 3 of 3)	61454.0	NM_008542	17130.0	Mm.325757	NM_008542	ENSMUSG00000036867	Smad6	Madh6|b2b390Clo	SMAD family member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139015198-4	chr5	139015113	139015313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20260.0	NM_008808	18590.0	Mm.2675	NM_008808	ENSMUSG00000025856	Pdgfa	-	platelet derived growth factor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116433388-2	chr11	116433288	116433488	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_003376)	promoter-TSS (NR_003376)	-706.0	NM_176902	319370.0	Mm.258466	NM_176902	ENSMUSG00000050628	Ubald2	1110014K08Rik|D030012E24Rik|Fam100b	UBA-like domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-91751507-4	chr12	91751413	91751613	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 1 of 6)	Lx7|LINE|L1	34923.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91860667-2	chr16	91860567	91860767	+	858.099976	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110275, intron 24 of 28)	intron (NM_001110275, intron 24 of 28)	70963.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-44418807-4	chr13	44418626	44418826	+	812.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21001.0	NR_045489	69491.0	Mm.392410	NR_045489	ENSMUSG00000098144	1700029N11Rik	-	RIKEN cDNA 1700029N11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-3009578-1	chr18	3009478	3009678	+	760.666687	f1_balb.idr	Intergenic	Intergenic	113834.0	NM_001167539	100312476.0	Mm.480293	NM_001167539	ENSMUSG00000091539	Vmn1r238	-	vomeronasal 1 receptor, 238	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-91357711-4	chr8	91357644	91357844	+	745.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011936, intron 1 of 8)	intron (NM_011936, intron 1 of 8)	44219.0	NM_011936	26383.0	Mm.4375	NM_011936	ENSMUSG00000055932	Fto	AW743446|mKIAA1752	fat mass and obesity associated	protein-coding	2.09197368682011	4.37844024697365	3.10928457528748	3.61949862008278	2.87878365818093	2.59154342710264	2.11246233135373	3.21532982778721	-1.26093390213739	0.0820001367312307	0.437854881126307
Merged-chr15-15102379-3	chr15	15102281	15102481	+	806.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1675720.0	NM_009869	12565.0	Mm.439758	NM_009869	ENSMUSG00000025370	Cdh9	-	cadherin 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-94271994-2	chr2	94271894	94272094	+	655.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10595.0	NR_030431	735259.0		NR_030431	ENSMUSG00000076335	Mir670	Mirn670|mir-670|mmu-mir-670	microRNA 670	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56074665-4	chr17	56074567	56074767	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024432, intron 2 of 11)	CpG	4666.0	NM_024432	66530.0	Mm.28000	NM_024432	ENSMUSG00000019578	Ubxn6	1200008L11Rik|2210415J11Rik|AU040909|Ubxd1|Ubxdc2	UBX domain protein 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-13292547-4	chr8	13292419	13292619	+	929.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172282, intron 2 of 12)	intron (NM_172282, intron 2 of 12)	-4393.0	NM_001042650	102323.0	Mm.368890	NM_001024504	ENSMUSG00000038506	Dcun1d2	AW495713|mFLJ10704	DCN1, defective in cullin neddylation 1, domain containing 2 (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131691619-4	chr1	131691536	131691736	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145509, intron 1 of 5)	intron (NM_145509, intron 1 of 5)	2941.0	NM_145509	226421.0	Mm.44508	NM_145509	ENSMUSG00000052688	Rab7b	5430435G22Rik	RAB7B, member RAS oncogene family	protein-coding	6.73686777643575	6.33225495937834	6.42158226492047	6.38766175232564	6.81373782605778	6.56403795835373	6.14298899682137	6.2259214517028	-0.0178463666481545	0.934925707006345	0.998431161219273
Merged-chr7-129756532-6	chr7	129756440	129756640	+	862.236084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	164677.0	NM_172255	207425.0	Mm.229323	NM_172255	ENSMUSG00000042055	Wdr11	2900055P10Rik|AW489876|Brwd2|mKIAA1351	WD repeat domain 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-11162094-4	chr14	11161990	11162190	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001308285)	promoter-TSS (NM_001308285)	-55.0	NM_001308285	14198.0	Mm.397619	NM_010210	ENSMUSG00000060579	Fhit	AW045638|Fra14A2	fragile histidine triad gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-83079429-4	chr13	83079306	83079506	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-381073.0	NR_039537	100628621.0		NR_039537	ENSMUSG00000106655	Mir3961	mmu-mir-3961	microRNA 3961	ncRNA	4.61899898122595	4.31477552470941	4.889374538023	5.14011619444126	4.53853302609482	4.53835067198823	4.92342543902695	5.16256820134093	0.0479512070506432	0.893975321715518	0.998431161219273
Merged-chr11-94148281-2	chr11	94148181	94148381	+	571.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63173.0	NM_009427	22057.0	Mm.259673	NM_009427	ENSMUSG00000037573	Tob1	Tob|Trob	transducer of ErbB-2.1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-121387857-1	chr10	121387757	121387957	+	562.0	f1_c57bl6.idr	intron (NM_029364, intron 9 of 13)	intron (NM_029364, intron 9 of 13)	22767.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	0.7265208856704	0.240305048933972	0.050321966252415	0.0463962332146712	0.406922382504527	0.244991042308647	0.051445631835824	0.206119349432315	-0.5441356577317	0.78447917144751	1
Merged-chr13-40920783-2	chr13	40920683	40920883	+	778.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133219, intron 1 of 2)	intron (NM_133219, intron 1 of 2)	3149.0	NM_133219	14538.0	Mm.314757	NM_008105	ENSMUSG00000021360	Gcnt2	5330430K10Rik|IGnT|IGnTA|IGnTB|IGnTC	glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-14738268-2	chr9	14738168	14738368	+	911.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177905, intron 2 of 18)	B2_Mm2|SINE|B2	2465.0	NM_177905	330890.0	Mm.334969	NM_177905	ENSMUSG00000036912	Piwil4	9230101H05Rik|Miwi2	piwi-like RNA-mediated gene silencing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84649901-1	chr8	84649801	84650001	+	868.0	f1_c57bl6.idr	Intergenic	Intergenic	12951.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	-0.593971782808924	-0.229906841943083	-0.860943262579957	-0.863380900560312	-0.866824728787484	-0.852294731670505	-0.860246335031522	-0.862955084542922	-3.08409683035983	0.297545618168977	1
Merged-chr6-90490150-1	chr6	90490050	90490250	+	582.5	f0_balb.idr	Intergenic	Intergenic	27574.0	NM_023184	66277.0	Mm.38343	NM_023184	ENSMUSG00000030087	Klf15	1810013I09Rik|AV048136|AW494632|CKLF|KKLF	Kruppel-like factor 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-15205018-2	chr18	15204918	15205118	+	679.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53572.0	NM_134112	106931.0	Mm.329299	NM_134112	ENSMUSG00000036225	Kctd1	4933402K10Rik|AI661543|AW553000	potassium channel tetramerisation domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-81199265-3	chr7	81199149	81199349	+	877.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1L|LTR|ERVL-MaLR	-14555.0	NM_008803	18584.0	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-103803166-3	chr3	103803112	103803312	+	919.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040412)	promoter-TSS (NR_040412)	83.0	NR_040412	100503157.0	Mm.445554	NR_040412	ENSMUSG00000084997	Gm15471	-	predicted gene 15471	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-92039701-4	chr16	92039588	92039788	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18634.0	NM_017391	53881.0	Mm.217354	NM_017391	ENSMUSG00000089774	Slc5a3	AA623876|BF642829|Smit1	solute carrier family 5 (inositol transporters), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-50214671-2	chr11	50214571	50214771	+	916.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3851.0	NM_011018	18412.0	Mm.40828	NM_011018	ENSMUSG00000015837	Sqstm1	A170|OSF-6|Osi|STAP|STONE14|p62	sequestosome 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-93095784-2	chr13	93095684	93095884	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_023821, exon 2 of 13)	exon (NM_023821, exon 2 of 13)	951.0	NR_046182	408254.0	Mm.474857	NR_046182	ENSMUSG00000114968	A630019I02Rik	-	RIKEN cDNA A630019I02 gene	ncRNA	-0.470518436365024	-0.453788058822459	-0.459214746236404	-0.112233746129881	-0.469459324597251	0.575214190334675	-0.458013403241996	-0.462697380723378	2.0804148996872	0.428257009442875	1
Merged-chr13-56151572-2	chr13	56151472	56151672	+	648.916626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16022.0	NM_001159513	26914.0	Mm.283802	NM_012015	ENSMUSG00000015937	H2afy	H2AF12M|mH2a1|macroH2A1	H2A histone family, member Y	protein-coding	-1.3681463318974	-1.33624156493372	-1.34650167276047	-0.80669348975676	-1.36769697821496	-1.33401815676661	-1.34417900924365	-1.3534210303531	-2.3580830592467	0.49586638340111	1
Merged-chr2-27562286-2	chr2	27562186	27562386	+	755.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47139.0	NM_080848	140858.0	Mm.28265	NM_080848	ENSMUSG00000026917	Wdr5	2410008O07Rik|AA408785|AA960360|Big|Big-3	WD repeat domain 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-21946251-1	chr10	21946151	21946351	+	654.0	f1_balb.idr	intron (NM_001161845, intron 2 of 13)	(TTTA)n|Simple_repeat|Simple_repeat	-32421.0	NM_001161847	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-90236928-3	chr9	90236794	90236994	+	935.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 3 of 12)	intron (NM_194334, intron 3 of 12)	33875.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-25495007-2	chr14	25494907	25495107	+	649.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	35822.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-85336558-6	chr15	85336491	85336691	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016843, intron 1 of 11)	CpG	210.0	NM_016843	54138.0	Mm.248906	NM_016843	ENSMUSG00000016541	Atxn10	AI325283|C77170|E46|Sca10|TEG-169|Tex169	ataxin 10	protein-coding	0.623707330503884	1.37955814963152	0.482256897837277	0.474720570953599	0.769008471123468	0.494098349039854	1.11800956879241	1.06988465955457	0.353370946165945	0.83070195172926	1
Merged-chr3-13592757-4	chr3	13592651	13592851	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357034, intron 1 of 7)	intron (NM_001357034, intron 1 of 7)	60114.0	NR_040598	75203.0	Mm.490940	NR_040598		4930539N22Rik	-	RIKEN cDNA 4930539N22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-33816791-3	chr18	33816625	33816825	+	981.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013512, intron 18 of 23)	intron (NM_013512, intron 18 of 23)	21833.0	NR_038151	69749.0	Mm.248787	NR_038151	ENSMUSG00000087590	Epb41l4aos	2410004N09Rik|Epb4.1l4aos	erythrocyte membrane protein band 4.1 like 4a, opposite strand	ncRNA	1.45897118871881	2.83962583973096	1.5816784084766	2.82526030004135	1.8461839552249	1.64840470798301	2.93293563923962	3.05120651634914	0.358850870693079	0.705813958590333	0.998431161219273
Merged-chr2-156780809-3	chr2	156780728	156780928	+	599.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172118, intron 3 of 3)	intron (NM_172118, intron 3 of 3)	5364.0	NM_172118	98932.0	Mm.271770	NM_172118	ENSMUSG00000067818	Myl9	AI327049|MLC20|Mylc2c|RLC-C	myosin, light polypeptide 9, regulatory	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-16104837-4	chr1	16104737	16104937	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011291)	promoter-TSS (NM_011291)	-404.0	NM_011291	19989.0	Mm.319659	NM_011291	ENSMUSG00000043716	Rpl7	Rpl7a|Surf-3	ribosomal protein L7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26122848-2	chr17	26122769	26122969	+	582.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024227)	promoter-TSS (NM_024227)	-634.0	NM_024227	68611.0	Mm.273102	NM_024227	ENSMUSG00000024181	Mrpl28	1110015G04Rik|L28mt|MAAT1|MRP-L28|p15	mitochondrial ribosomal protein L28	protein-coding	0.836112574083705	0.216950072619462	0.21069579242836	0.205866527721173	0.767789407421697	0.414238099770586	0.672967854951341	0.206710462688885	0.801789163749199	0.686110695033615	1
Merged-chr14-50750795-1	chr14	50750695	50750895	+	692.0	f1_c57bl6.idr	Intergenic	Lx|LINE|L1	-6471.0	NM_020288	56858.0	Mm.103732	NM_020288	ENSMUSG00000059069	Olfr749	MOR106-1|ORL461|Ors1	olfactory receptor 749	protein-coding	0.871104297120021	1.93797222128166	1.75356102581489	1.98736265515562	0.875014736955598	0.935183438053563	1.76917917290806	1.45484944420767	-1.26450001441607	0.343396356274764	0.84406571083625
Merged-chr9-106418470-1	chr9	106418370	106418570	+	678.0	f1_c57bl6.idr	Intergenic	Intergenic	-10941.0	NM_001324533	19944.0	Mm.288696	NM_009082	ENSMUSG00000048758	Rpl29	Rpl43	ribosomal protein L29	protein-coding	-0.0892696157424303	1.35792462270318	-0.0672170911537909	-0.0753624387066984	-0.0871689729834655	0.753400202665188	-0.0649189267910688	-0.0739273181320993	-1.31112997537206	0.551717027969831	1
Merged-chr6-125312697-2	chr6	125312597	125312797	+	737.599976	f1_balb.idr|f1_c57bl6.idr	intron (NM_010736, intron 4 of 9)	intron (NM_010736, intron 4 of 9)	1188.0	NM_010736	17000.0	Mm.3122	NM_010736	ENSMUSG00000030339	Ltbr	AI256028|LTbetaR|Ltar|TNF-R-III|TNFCR|TNFR-RP|TNFR2-RP|TNFRrp|Tnfbr|Tnfrsf3	lymphotoxin B receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-69531605-2	chr13	69531489	69531689	+	816.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198600, intron 1 of 12)	intron (NM_198600, intron 1 of 12)	2275.0	NM_198600	210106.0	Mm.315959	NM_198600	ENSMUSG00000034575	Papd7	LAK-1|POLK|Pols|TRF4|TRF4-1	PAP associated domain containing 7	protein-coding	0.649634339524123	0.504165127418137	0.491340210199357	0.863121568368585	0.466679145597066	0.948969120138119	1.84288012628278	1.14724242165927	2.69745122017612	0.0967065367729027	0.48318365971736
Merged-chr9-40731866-1	chr9	40731766	40731966	+	603.5	f0_balb.idr	intron (NM_133733, intron 1 of 6)	intron (NM_133733, intron 1 of 6)	45902.0	NM_133733	71566.0	Mm.280560	NM_133733	ENSMUSG00000032024	Clmp	9030425E11Rik|ACAM|ASP5|AW557819	CXADR-like membrane protein	protein-coding	0.158370158609991	0.0246151512767929	0.0183341000588523	0.188545536029189	0.973776989553356	0.0260269820424266	0.0197219733509079	0.469536503660179	2.54846004990484	0.22521884916139	1
Merged-chr12-34297218-4	chr12	34297133	34297333	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271386, intron 16 of 27)	intron (NM_001271386, intron 16 of 27)	231656.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-122619705-3	chr2	122619587	122619787	+	904.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8410.0	NM_025961	67092.0	Mm.29975	NM_025961	ENSMUSG00000027199	Gatm	1810003P21Rik|AI314789|AT	glycine amidinotransferase (L-arginine:glycine amidinotransferase)	protein-coding	2.86741252575382	3.73924381969562	2.52719727084585	2.61586676776714	5.18255866528525	5.17305024632281	5.51267989007919	4.32265283210764	2.79267351027769	1.0916377927957e-08	1.30294646833585e-06
Merged-chr11-55454258-2	chr11	55454158	55454358	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009720, intron 2 of 3)	PB1D10|SINE|Alu	6950.0	NM_009720	11927.0	Mm.217759	NM_009720	ENSMUSG00000018585	Atox1	AI256639|Atx1	antioxidant 1 copper chaperone	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-122754094-4	chr10	122753986	122754186	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110218, intron 1 of 9)	intron (NM_001110218, intron 1 of 9)	74771.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-104042916-4	chr5	104042860	104043060	+	899.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-3904.0	NM_028794	74167.0	Mm.241484	NM_028794	ENSMUSG00000029310	Nudt9	1190002C07Rik|ADPR-PPase|AI462474	nudix (nucleoside diphosphate linked moiety X)-type motif 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-33800106-4	chr3	33799969	33800169	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025978)	promoter-TSS (NM_025978)	-114.0	NM_027619	67120.0	Mm.275710	NM_025978	ENSMUSG00000027677	Ttc14	2700016E08Rik|4930434D01Rik|4931403I22Rik|4933402I15Rik|AI662468|AU014779|AW561908|cI-44|mKIAA1980	tetratricopeptide repeat domain 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-135669420-4	chr7	135669219	135669419	+	876.9270630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316681, intron 9 of 17)	intron (NM_001316681, intron 9 of 17)	-17005.0	NR_015548	67765.0	Mm.445272	NR_015548	ENSMUSG00000097471	5830432E09Rik	-	RIKEN cDNA 5830432E09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10915133-2	chr19	10915033	10915233	+	702.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009580, intron 9 of 11)	intron (NM_009580, intron 9 of 11)	5468.0	NM_009580	22786.0	Mm.24767	NM_009580	ENSMUSG00000024734	Zp1	-	zona pellucida glycoprotein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-58563704-4	chr4	58563605	58563805	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-10214.0	NM_010336	14745.0	Mm.4772	NM_010336	ENSMUSG00000038668	Lpar1	AI326300|Edg2|Gpcr26|Kdt2|lpA1|vzg-1	lysophosphatidic acid receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166584341-2	chr2	166584241	166584441	+	779.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 25 of 39)	intron (NM_177782, intron 25 of 39)	19819.0	NR_152154	433503.0	Mm.491336	NR_152154		Gm29679	-	predicted gene, 29679	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-48881532-2	chr13	48881432	48881632	+	923.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033268, intron 17 of 17)	intron (NM_001033268, intron 17 of 17)	-10647.0	NM_011078	18676.0	Mm.486213	NM_011078	ENSMUSG00000038025	Phf2	GRC5	PHD finger protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-161560537-4	chr1	161560441	161560641	+	993.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	65884.0	NM_183391	240873.0	Mm.276823	NM_183391	ENSMUSG00000066755	Tnfsf18	Gitrl|Tnlg2a	tumor necrosis factor (ligand) superfamily, member 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-6349427-1	chr15	6349327	6349527	+	547.0	f1_c57bl6.idr	intron (NM_001008702, intron 1 of 13)	intron (NM_001008702, intron 1 of 13)	-37321.0	NM_023118	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-17871139-4	chr17	17871087	17871287	+	966.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	12752.0	NM_013521	14293.0	Mm.56951	NM_013521	ENSMUSG00000045551	Fpr1	FPR|LXA4R|fMLF-R	formyl peptide receptor 1	protein-coding	2.47064894088395	2.64223935021487	2.45935376093101	1.0331201180884	1.43130335837208	2.37354838429237	1.06537872811908	1.03760254057657	-1.64358270345374	0.165205007598958	0.6300475782493
Merged-chr4-24602884-2	chr4	24602784	24602984	+	934.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_199467)	TTS (NM_199467)	106433.0	NM_199467	212377.0	Mm.120919	NM_199467	ENSMUSG00000045751	Mms22l	F730047E07Rik|Gm134	MMS22-like, DNA repair protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55660363-4	chr14	55660264	55660464	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_028316, exon 1 of 5)	non-coding (NR_028316, exon 1 of 5)	144.0	NM_023397	67881.0	Mm.24601	NM_023397	ENSMUSG00000002329	Mdp1	1810034K20Rik|AI035604	magnesium-dependent phosphatase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45588924-2	chr7	45588824	45589024	+	943.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001243052, intron 10 of 10)	intron (NM_001243052, intron 10 of 10)	-13748.0	NR_038165	71661.0	Mm.439894	NR_038165	ENSMUSG00000109644	0610005C13Rik	AI182092	RIKEN cDNA 0610005C13 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-69715941-1	chr8	69715841	69716041	+	560.0	f1_balb.idr	intron (NM_001039967, intron 1 of 5)	intron (NM_001039967, intron 1 of 5)	961.0	NM_001039967	66869.0	Mm.334581	NM_181274	ENSMUSG00000054648	Zfp869	1200003I07Rik	zinc finger protein 869	protein-coding	-0.97473176494738	-0.785769525926056	-0.9698884000356	-0.818329423203402	-0.721041442177833	-0.957503330848199	-0.968541895990757	-0.815846478329574	0.384936812345405	0.890329385376953	1
Merged-chr11-66985112-2	chr11	66985012	66985212	+	756.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27218.0	NR_130646	71576.0	Mm.340077	NR_130315	ENSMUSG00000085683	Tmem238l	9130409J20Rik	transmembrane protein 238 like	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-25591524-2	chr9	25591424	25591624	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 6 of 7)	intron (NM_026189, intron 6 of 7)	109927.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-32203802-2	chr16	32203702	32203902	+	565.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME4b|LINE|L1	24002.0	NM_001033539	328660.0	Mm.441006	NM_001033539	ENSMUSG00000075269	Bex6	B020003O03Rik	brain expressed family member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-40708336-4	chr19	40708241	40708441	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009848, intron 1 of 9)	intron (NM_009848, intron 1 of 9)	48571.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	4.62632611905277	5.05081182784866	4.30623090448694	5.05881615238768	4.89827383546194	4.12691854521016	5.58273865527281	4.87396063535244	0.21241688472093	0.58138599266166	0.966599221005409
Merged-chr4-133338770-1	chr4	133338670	133338870	+	746.5	f0_balb.idr	intron (NM_199306, intron 1 of 15)	intron (NM_199306, intron 1 of 15)	545.0	NM_199306	230796.0	Mm.226576	NM_199306	ENSMUSG00000037622	Wdtc1	Gm695|adipose|adp	WD and tetratricopeptide repeats 1	protein-coding	1.62521305098955	0.966607014673181	0.936176175686975	2.45403247404295	2.75243328651753	0.973260124214035	0.943022225707122	2.54201520454341	0.945583884875708	0.690010478654751	0.996533206832645
Merged-chr18-75019205-1	chr18	75019105	75019305	+	1000.0	f1_c57bl6.idr	intron (NM_027727, intron 1 of 16)	CpG	433.0	NM_027727	69190.0	Mm.173826	NM_027727	ENSMUSG00000035765	Dym	1810041M12Rik|4933427L07Rik|C030019K18Rik	dymeclin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-108570539-4	chr6	108570426	108570626	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52641.0	NR_040757	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-16104421-2	chr1	16104318	16104518	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_011291)	promoter-TSS (NM_011291)	15.0	NM_011291	19989.0	Mm.319659	NM_011291	ENSMUSG00000043716	Rpl7	Rpl7a|Surf-3	ribosomal protein L7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-84851280-4	chr18	84851175	84851375	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025797)	promoter-TSS (NM_025797)	-63.0	NM_025797	109672.0	Mm.31018	NM_025797	ENSMUSG00000024646	Cyb5a	0610009N12Rik|Cyb5	cytochrome b5 type A (microsomal)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55830633-3	chr19	55830490	55830690	+	656.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_138565, intron 4 of 15)	MTD|LTR|ERVL-MaLR	-64731.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-103922577-2	chr13	103922477	103922677	+	645.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1991.0	NM_001005868	59079.0	Mm.277354	NM_021563	ENSMUSG00000021709	Erbin	1700028E05Rik|Erbb2ip|mKIAA1225	Erbb2 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5297113-2	chr19	5297013	5297213	+	619.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1218.0	NM_001024717	545276.0	Mm.447174	NM_001024717	ENSMUSG00000047658	Gal3st3	-	galactose-3-O-sulfotransferase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-161053324-1	chr1	161053224	161053424	+	661.0	f0_balb.idr	intron (NM_172644, intron 10 of 16)	intron (NM_172644, intron 10 of 16)	15232.0	NR_028543	100217446.0		NR_028543	ENSMUSG00000064968	Snord47	MBII-96	small nucleolar RNA, C/D box 47	snoRNA	1.08028508549312	2.27980203355396	3.03289802269255	1.13719902594865	2.25028727507294	2.85722174350335	2.8388637107045	1.14290735578706	0.532145759092562	0.773038366759654	0.998431161219273
Merged-chr11-119729500-3	chr11	119729389	119729589	+	648.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028898, intron 4 of 33)	intron (NM_028898, intron 4 of 33)	104876.0	NR_045313	319454.0	Mm.442144	NR_045312	ENSMUSG00000085081	Rptoros	A430071A18Rik	regulatory associated protein of MTOR, complex 1, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-165642443-4	chr1	165642363	165642563	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-7922.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-81128306-2	chr13	81128206	81128406	+	554.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 87 of 89)	intron (NM_054053, intron 87 of 89)	164232.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-59870321-4	chr13	59870203	59870403	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-47156.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	4.30096833082855	5.44996989999322	4.91349159859106	5.57608847994575	4.88049105435823	5.21583634374928	3.99534928256446	4.84979505327226	-0.406146994709588	0.297140684729389	0.80018568054389
Merged-chr1-52174615-1	chr1	52174515	52174715	+	673.0	f1_c57bl6.idr	intron (NM_001081081, intron 14 of 17)	Lx2|LINE|L1	54993.0	NM_001205313	20846.0	Mm.277406	NM_009283	ENSMUSG00000026104	Stat1	2010005J02Rik|AA408197	signal transducer and activator of transcription 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-38019520-4	chr7	38019418	38019618	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011274)	promoter-TSS (NM_011274)	34.0	NM_011274	19777.0	Mm.387220	NM_011274	ENSMUSG00000030421	Uri1	C80913|NNX3|Rmp	URI1, prefoldin-like chaperone	protein-coding	3.86543924647588	4.12380575974047	3.37195977115234	4.06954365695209	3.95484827644766	4.852766092759	4.53424015624298	4.77049174440149	0.894344887875175	0.0390226631766903	0.281738952397138
Merged-chr4-3529913-4	chr4	3529818	3530018	+	941.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7172.0	NR_037306	100499523.0		NR_037306	ENSMUSG00000094253	Mir3471-2	mmu-mir-3471-2	microRNA 3471-2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114876766-2	chr11	114876666	114876866	+	636.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-13275.0	NM_001347654	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-103471413-2	chr14	103471313	103471513	+	764.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41928.0	NM_022886	64929.0	Mm.244003	NM_022886	ENSMUSG00000022123	Scel	9230114I02Rik	sciellin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-103031208-2	chr11	103031108	103031308	+	798.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008707, intron 1 of 11)	B1_Mur4|SINE|Alu	2665.0	NM_008707	18107.0	Mm.10265	NM_008707	ENSMUSG00000020936	Nmt1	AW536594	N-myristoyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-88769139-2	chr5	88769039	88769239	+	586.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007832, intron 1 of 6)	B1F|SINE|Alu	4126.0	NM_007832	13178.0	Mm.298892	NM_007832	ENSMUSG00000029366	Dck	-	deoxycytidine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152291035-3	chr1	152290942	152291142	+	877.2000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	95640.0	NM_025677	66637.0	Mm.379120	NM_025677	ENSMUSG00000014980	Tsen15	5730449L18Rik|AL023077|Sen15	tRNA splicing endonuclease subunit 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-27327462-1	chr7	27327362	27327562	+	1000.0	f1_c57bl6.idr	exon (NM_175641, exon 12 of 33)	exon (NM_175641, exon 12 of 33)	6186.0	NM_001113549	108075.0	Mm.272251	NM_175641	ENSMUSG00000040488	Ltbp4	2310046A13Rik	latent transforming growth factor beta binding protein 4	protein-coding	-1.22315906685268	-1.19557143632602	-1.20673282037136	-0.55836125556573	-1.22265483704505	-1.19315271784257	-1.20420612767407	-1.21425999345206	-2.67891099987134	0.437057736398543	1
Merged-chr8-75095017-6	chr8	75095041	75095241	+	809.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010442, intron 1 of 4)	intron (NM_010442, intron 1 of 4)	1523.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	0.519796600291147	0.517127323416284	0.716037152694719	0.170582048389292	0.302880950203288	0.524438563797223	0.175983974181316	0.171314973188065	-1.49567664240691	0.434436361989084	1
Merged-chr4-106225523-2	chr4	106225376	106225576	+	615.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15737.0	NR_151521	105244641.0	Mm.404914	NR_151521		Gm12724	-	predicted gene 12724	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-169777416-1	chr2	169777316	169777516	+	1000.0	f0_c57.idr	intron (NM_080455, intron 1 of 1)	intron (NM_080455, intron 1 of 1)	143770.0	NM_080455	228911.0	Mm.315789	NM_080455	ENSMUSG00000047907	Tshz2	2900073F20Rik|B830045G17|Mtsh2|Sdccag33l|Tsh2|Zfp218|mKIAA4248|teashirt2	teashirt zinc finger family member 2	protein-coding	1.05757662768327	1.46454830435579	0.312555315648393	0.941755510850624	0.292535495743946	0.325371073034586	0.314882120553574	0.305786113096718	-4.59850614061417	0.0136509322887177	1
Merged-chr13-49217249-2	chr13	49217149	49217349	+	840.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1223.0	NM_026738	68480.0	Mm.3336	NM_026738	ENSMUSG00000037960	Card19	1110007C09Rik|AI851695|Bincard	caspase recruitment domain family, member 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-85011157-2	chr8	85011057	85011257	+	1000.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_052011, exon 5 of 10)	non-coding (NR_052011, exon 5 of 10)	3251.0	NM_001130194	212989.0	Mm.215154	NM_001130194	ENSMUSG00000052819	Best2	Vmd2l1	bestrophin 2	protein-coding	-1.18832717429738	-1.16380929885254	-0.856565824811958	-1.18328408639367	-1.18787580914644	-1.16149229066421	-0.849604865165746	-1.18171197755832	0.0406512889656815	0.990321405100139	1
Merged-chr10-75314336-2	chr10	75314236	75314436	+	723.599976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2541.0	NM_009630	11540.0	Mm.333734	NM_009630	ENSMUSG00000020178	Adora2a	A2AAR|A2aR|AA2AR	adenosine A2a receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-4925787-2	chr7	4925687	4925887	+	784.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173008)	promoter-TSS (NM_173008)	-57.0	NM_173008	269855.0	Mm.44190	NM_173008	ENSMUSG00000035279	Ssc5d	A430110N23Rik|S5D-SRCRB	scavenger receptor cysteine rich family, 5 domains	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-55212236-4	chr13	55212166	55212366	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008739, intron 1 of 22)	CpG	2484.0	NM_008739	18193.0	Mm.168965	NM_008739	ENSMUSG00000021488	Nsd1	AI528500|KMT3B	nuclear receptor-binding SET-domain protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-25848250-2	chr17	25848150	25848350	+	856.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163766, intron 33 of 40)	intron (NM_001163766, intron 33 of 40)	-3399.0	NM_145999	214952.0	Mm.40907	NM_145999	ENSMUSG00000025733	Rhot2	Arht2|Miro2	ras homolog family member T2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-130954555-4	chr2	130954464	130954664	+	997.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009730, intron 6 of 28)	intron (NM_009730, intron 6 of 28)	48069.0	NM_009730	11990.0	Mm.119936	NM_009730	ENSMUSG00000027312	Atrn	AW558010|Mgca|mg	attractin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-21246075-4	chr16	21245962	21246162	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10004.0	NR_106145	102465781.0		NR_106145	ENSMUSG00000098400	Mir7680	Gm27417|mmu-mir-7680	microRNA 7680	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105393403-4	chr8	105393306	105393506	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301173, intron 5 of 15)	intron (NM_001301173, intron 5 of 15)	18025.0	NM_001081333	102075.0	Mm.32034	NM_175321	ENSMUSG00000014782	Plekhg4	4931414L13Rik|AI448583|mFLJ00068	pleckstrin homology domain containing, family G (with RhoGef domain) member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-47314885-2	chr4	47314785	47314985	+	685.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38337.0	NM_001312868	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-135725065-2	chr1	135724965	135725165	+	588.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360782, intron 1 of 5)	intron (NM_001360782, intron 1 of 5)	-4102.0	NR_153810	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-43658152-2	chr7	43658052	43658252	+	727.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_031181, intron 3 of 6)	ID_B1|SINE|B4	2009.0	NM_031181	83382.0	Mm.157702	NM_031181	ENSMUSG00000030474	Siglece	Cd170|Siglec12|Siglec5|Siglec9|Siglecl1|mSiglec-E	sialic acid binding Ig-like lectin E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-145347182-3	chr6	145347097	145347297	+	633.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	-40428.0	NR_003625	381827.0	Mm.179075	NM_001001987		1700073E17Rik	-	ribosomal protein L7 pseudogene	pseudo	-0.598706905708664	-0.577566812411965	-0.584176226153734	0.572426880025151	-0.597298542082819	-0.576115755585719	-0.58269365343487	-0.588538872708065	-4.5253319481497	0.0541431574962949	1
Merged-chr15-6523732-2	chr15	6523632	6523832	+	610.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56115.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-58867260-4	chr11	58867155	58867355	+	871.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172403)	promoter-TSS (NM_172403)	15.0	NM_172403	69944.0	Mm.32118	NM_172403	ENSMUSG00000020491	2810021J22Rik	AI449137	RIKEN cDNA 2810021J22 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-4618401-4	chr13	4618290	4618490	+	893.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9226.0	NM_018859	56043.0	Mm.251908	NM_018859	ENSMUSG00000045410	Akr1e1	1810061I10Rik|Akr1e2	aldo-keto reductase family 1, member E1	protein-coding	3.01803072137208	2.30473968257438	2.64594038817399	2.45368257755223	2.22276963398481	2.97573495404031	2.97276835837419	2.96824070376065	0.346692437522024	0.632264736420671	0.982230082053879
Merged-chr4-145235386-2	chr4	145235286	145235486	+	897.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011610, intron 1 of 9)	ORR1D1|LTR|ERVL-MaLR	11484.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-21604667-1	chr10	21604567	21604767	+	619.0	f1_c57bl6.idr	intron (NR_027968, intron 2 of 2)	intron (NR_027968, intron 2 of 2)	11522.0	NR_027968	67692.0	Mm.54306	NM_183266	ENSMUSG00000050844	1700020N01Rik	-	RIKEN cDNA 1700020N01 gene	ncRNA	1.57481490539658	1.32891386997585	0.589748311031522	0.952304371008174	0.564734147473665	0.60568970558411	0.59264646610348	1.62187117756509	-0.824252700926238	0.616501843731414	0.97736719401417
Merged-chr8-33722280-3	chr8	33722197	33722397	+	702.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9617.0	NM_001167921	68153.0	Mm.286104	NM_026584	ENSMUSG00000031585	Gtf2e2	34kDa|AI462509|C330006J08Rik	general transcription factor II E, polypeptide 2 (beta subunit)	protein-coding	3.35420760818991	3.75418385092431	4.11747036650507	3.60386110619303	3.69604615950035	2.78849304303525	2.84211107045616	3.68933365592773	-0.596353270941384	0.286456765020201	0.791063740995635
Merged-chr6-15756165-2	chr6	15756065	15756265	+	607.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175088, intron 3 of 4)	intron (NM_175088, intron 3 of 4)	35504.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-96921723-4	chr5	96921627	96921827	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131152, intron 1 of 2)	intron (NR_131152, intron 1 of 2)	455.0	NR_131152	666266.0	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	5.0500506558134	5.52068466975611	5.04260794530277	5.65452448510047	5.97313142455922	5.98629789549541	5.65375994039652	5.607931651719	0.539027630816287	0.0500472956826149	0.32631507195464
Merged-chr8-119440106-2	chr8	119440006	119440206	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027950, intron 1 of 5)	intron (NM_027950, intron 1 of 5)	2944.0	NM_027950	71839.0	Mm.272357	NM_027950	ENSMUSG00000074063	Osgin1	1700012B18Rik|Okl38	oxidative stress induced growth inhibitor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-40083339-2	chr1	40083239	40083439	+	652.166626	f1_balb.idr|f1_c57bl6.idr	intron (NR_037980, intron 3 of 3)	intron (NR_037980, intron 3 of 3)	-1375.0	NM_010555	16178.0	Mm.1349	NM_010555	ENSMUSG00000026073	Il1r2	CD121b|Il1r-2	interleukin 1 receptor, type II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-119813886-4	chr8	119813778	119813978	+	734.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028071, intron 3 of 3)	intron (NM_028071, intron 3 of 3)	26701.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128780813-2	chr2	128780713	128780913	+	834.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 13 of 18)	intron (NM_008587, intron 13 of 18)	-37490.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	-0.539072095141396	-1.17607782048307	-1.18720726126045	-1.19634931528472	-1.20196491063698	-1.17366602423904	-1.18468779981884	-1.19471289198531	-2.68787187143179	0.435473844436726	1
Merged-chr9-116098740-2	chr9	116098660	116098860	+	765.25	f0_balb.idr|f0_c57.idr	intron (NM_029575, intron 5 of 6)	intron (NM_029575, intron 5 of 6)	76603.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	2.29823542208888	2.68044520581426	1.09639208716866	1.07434885862032	1.7412183348483	2.23244853559132	1.35991795211744	1.96455226083357	-0.34648917669175	0.762923419240075	0.998431161219273
Merged-chr17-57098486-4	chr17	57098391	57098591	+	805.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033508, intron 3 of 3)	intron (NR_033508, intron 3 of 3)	-6894.0	NM_009404	21950.0	Mm.41171	NM_009404	ENSMUSG00000035678	Tnfsf9	4-1BB-L|4-1BBL|AI848817|Cd137l|Ly63l	tumor necrosis factor (ligand) superfamily, member 9	protein-coding	1.09396908659395	0.887136132267746	0.84229240611988	0.366975979808581	0.358630695252346	0.382177896229836	0.852265221354563	0.368005342267241	-1.94936143569554	0.295651216803908	1
Merged-chr8-119380798-3	chr8	119380710	119380910	+	858.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-14082.0	NM_019966	56690.0	Mm.423037	NM_019966	ENSMUSG00000074064	Mlycd	AI324784|Mcd	malonyl-CoA decarboxylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-53496055-3	chr7	53495950	53496150	+	876.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	395839.0	NR_105746	102466619.0		NR_105746	ENSMUSG00000099176	Mir6238	Gm27982|mmu-mir-6238	microRNA 6238	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-73537783-2	chr5	73537683	73537883	+	576.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_153313, intron 7 of 9)	ORR1E-int|LTR|ERVL-MaLR	46757.0	NM_178896	100737.0	Mm.220312	NM_178896	ENSMUSG00000051674	Dcun1d4	AI836376	DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-134096645-2	chr1	134096545	134096745	+	854.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14597.0	NM_001284525	71884.0	Mm.328268	NM_027979	ENSMUSG00000026450	Chit1	2300002L19Rik	chitinase 1 (chitotriosidase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-102144748-2	chr15	102144648	102144848	+	736.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008344, exon 1 of 4)	exon (NM_008344, exon 1 of 4)	562.0	NM_008344	16012.0	Mm.358609	NM_008344	ENSMUSG00000023046	Igfbp6	IGFBP-6	insulin-like growth factor binding protein 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-72243961-2	chr5	72243861	72244061	+	815.666626	f1_balb.idr|f1_c57bl6.idr	intron (NR_003966, intron 5 of 22)	intron (NR_003966, intron 5 of 22)	40618.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-75924542-2	chr15	75924442	75924642	+	584.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_031201)	TTS (NM_031201)	-2982.0	NM_025412	66194.0	Mm.250599	NM_025412	ENSMUSG00000022571	Pycrl	1110058B13Rik|2700073G24Rik|Pycr3	pyrroline-5-carboxylate reductase-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-107118339-4	chr13	107118248	107118448	+	998.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	95778.0	NR_015471	100040322.0	Mm.133867	NR_015471	ENSMUSG00000071181	3830408C21Rik	-	RIKEN cDNA 3830408C21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-35133192-2	chr7	35133092	35133292	+	562.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	13899.0	NM_007678	12606.0	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-52999650-4	chr2	52999528	52999728	+	977.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	141760.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-74018014-3	chr13	74017921	74018121	+	925.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_182839, intron 1 of 3)	intron (NM_182839, intron 1 of 3)	8602.0	NM_182839	72948.0	Mm.39752	NM_182839	ENSMUSG00000021573	Tppp	2900041A09Rik|AI849835	tubulin polymerization promoting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-34063848-4	chr11	34063761	34063961	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010696, intron 3 of 20)	intron (NM_010696, intron 3 of 20)	16933.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44127297-2	chr9	44127177	44127377	+	909.7333369999999	f1_balb.idr|f1_c57bl6.idr	intron (NR_152189, intron 1 of 1)	PB1D9|SINE|Alu	7208.0	NR_152189	100038560.0	Mm.429758	NR_152189		Gm10687	-	predicted gene 10687	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-52897763-2	chr2	52897663	52897863	+	665.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	39895.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-155728116-1	chr2	155728016	155728216	+	660.0	f1_c57bl6.idr	intron (NM_145537, intron 2 of 10)	intron (NM_145537, intron 2 of 10)	1359.0	NM_145537	108687.0	Mm.273706	NM_145537	ENSMUSG00000038312	Edem2	9530090G24Rik|AI327354	ER degradation enhancer, mannosidase alpha-like 2	protein-coding	0.633703372779975	0.45385466627208	0.111370204649886	0.107344843859046	0.359757783829898	0.117784688283337	0.112522808774696	0.621428387891019	-0.192362442658722	0.925333402176806	1
Merged-chr14-73145120-2	chr14	73145020	73145220	+	849.333374	f1_balb.idr|f1_c57bl6.idr	intron (NR_033185, intron 1 of 15)	intron (NR_033185, intron 1 of 15)	2335.0	NR_033185	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-37765888-2	chr18	37765788	37765988	+	639.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_033595, exon 1 of 4)	5' UTR (NM_033595, exon 1 of 4)	308.0	NM_033595	93724.0	Mm.247203	NM_033595	ENSMUSG00000102428	Pcdhga12	Pcdh13|pc2c	protocadherin gamma subfamily A, 12	protein-coding	1.08022801951819	1.61714070174417	1.74482516204769	1.27432070855221	1.08873013064823	0.811585472279924	1.32580994929315	0.787134944124193	-1.83726430042093	0.175809726659665	0.645775639984829
Merged-chr12-102444336-2	chr12	102444236	102444436	+	954.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4523.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-137095375-4	chr5	137095280	137095480	+	796.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	20827.0	NM_201373	384309.0	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-104299312-4	chr14	104299181	104299381	+	861.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	168718.0	NM_011143	18996.0	Mm.246550	NM_011143	ENSMUSG00000048349	Pou4f1	Brn-3|Brn-3.0|Brn3|Brn3.0|Brn3a|E130119J07Rik	POU domain, class 4, transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81300331-3	chr10	81300239	81300439	+	797.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293647, intron 1 of 17)	PB1D7|SINE|Alu	7376.0	NM_001146687	18717.0	Mm.24222	NM_008844	ENSMUSG00000034902	Pip5k1c	AI115456|AI835305|Pip5kIgamma	phosphatidylinositol-4-phosphate 5-kinase, type 1 gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53180693-4	chr4	53180584	53180784	+	866.520874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20789.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-37890350-4	chr13	37890248	37890448	+	962.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039188, intron 2 of 9)	intron (NM_001039188, intron 2 of 9)	1477.0	NM_001177869	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-11089252-1	chr4	11089152	11089352	+	567.0	f0_balb.idr	Intergenic	MamSINE1|SINE|tRNA	-13047.0	NM_001085493	76947.0	Mm.275265	NM_001085493	ENSMUSG00000050323	Ndufaf6	2310030N02Rik	NADH dehydrogenase (ubiquinone) complex I, assembly factor 6	protein-coding	-0.442920386211396	0.319130576221356	-0.433785386784996	-0.437214638359637	0.0599048110548074	-0.428350374317239	-0.432806115461698	-0.436615140762484	-0.806063608693084	0.765310836887809	1
Merged-chr2-116942545-4	chr2	116942431	116942631	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42379.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-149957689-4	chr1	149957599	149957799	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008869, intron 1 of 17)	intron (NM_008869, intron 1 of 17)	3591.0	NM_008869	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28947069-2	chr17	28946969	28947169	+	695.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4807.0	NM_153390	69307.0	Mm.107605	NM_153390	ENSMUSG00000045378	Pxt1	1700001G18Rik|Stepp	peroxisomal, testis specific 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101820942-2	chr7	101820842	101821042	+	724.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_008887, exon 2 of 3)	exon (NM_008887, exon 2 of 3)	2629.0	NM_008887	11859.0	Mm.5028	NM_008887	ENSMUSG00000007946	Phox2a	Arix|Phox2|Pmx2|Pmx2a|Px2a	paired-like homeobox 2a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-25152975-2	chr8	25152875	25153075	+	815.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	6258.0	NR_106187	102467006.0		NR_106187	ENSMUSG00000099142	Mir8108	Gm27484|mmu-mir-8108	microRNA 8108	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-108071477-4	chr4	108071382	108071582	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011327, intron 11 of 15)	intron (NM_011327, intron 11 of 15)	-15875.0	NR_105823	102465213.0		NR_105823	ENSMUSG00000098980	Mir6397	Gm28004|mmu-mir-6397	microRNA 6397	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-64086601-2	chr15	64086501	64086701	+	580.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001276462)	TTS (NM_001276462)	-26153.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-79145815-4	chr3	79145722	79145922	+	891.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310536)	promoter-TSS (NM_001310536)	53.0	NM_001099624	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-23570370-4	chr9	23570260	23570460	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13A2|LTR|ERVK	347284.0	NM_028472	73230.0	Mm.335020	NM_028472	ENSMUSG00000031963	Bmper	3110056H04Rik|CV-2|Crim3|Cv2	BMP-binding endothelial regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-114979867-2	chr5	114979767	114979967	+	693.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-8805.0	NM_009327	21405.0	Mm.332607	NM_009327	ENSMUSG00000029556	Hnf1a	AI323641|HNF1|HNF1-alpha|HNF1[a]|Hnf-1|Hnf1alpha|LFB1|Tcf-1|Tcf1	HNF1 homeobox A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90472384-2	chr2	90472284	90472484	+	645.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 2 of 23)	intron (NM_008982, intron 2 of 23)	6790.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30130328-2	chr2	30130228	30130428	+	543.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-3418.0	NM_146252	70296.0	Mm.19172	NM_146252	ENSMUSG00000039678	Tbc1d13	2600014A06Rik|BC025586	TBC1 domain family, member 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36531316-2	chr1	36531216	36531416	+	776.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_153502, exon 9 of 9)	3' UTR (NM_153502, exon 9 of 9)	4423.0	NM_153502	78321.0	Mm.41421	NM_153502	ENSMUSG00000067653	Ankrd23	1110058D09Rik|2310041C05Rik|AI853437|Darp|MARP3	ankyrin repeat domain 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-134316766-2	chr5	134316666	134316866	+	595.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-2006.0	NM_010365	14886.0	Mm.261570	NM_010365	ENSMUSG00000060261	Gtf2i	6030441I21Rik|BAP-135|Diws1t|GtfII-I|Spin|TFII-I|WBSCR6	general transcription factor II I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-67480132-2	chr15	67480032	67480232	+	852.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	253363.0	NR_045140	69334.0	Mm.63770	NR_045140	ENSMUSG00000102069	1700012I11Rik	-	RIKEN cDNA 1700012I11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90676963-2	chr2	90676863	90677063	+	626.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021512)	promoter-TSS (NM_021512)	-252.0	NM_021512	59015.0	Mm.24532	NM_021512	ENSMUSG00000051329	Nup160	160kDa|2810011M03Rik|AA414952|AU020188|Gtl-13|Gtl1-13|Gtl13|mKIAA0197	nucleoporin 160	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-10373070-2	chr17	10372970	10373170	+	553.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48468.0	NR_045461	76634.0	Mm.491052	NR_045461	ENSMUSG00000099384	1700110C19Rik	-	RIKEN cDNA 1700110C19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-118096347-4	chr10	118096284	118096484	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45403.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	6.41201381259538	6.51992298327806	6.50456297134632	6.84976435849627	6.32971344673737	5.82149974243435	5.04434065849895	5.80233929302649	-0.816205160559993	0.00162003937131367	0.0287249739561893
Merged-chr3-105055817-3	chr3	105055738	105055938	+	679.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	-2692.0	NM_030249	80281.0	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-4457383-2	chr2	4457283	4457483	+	718.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 2 of 23)	intron (NM_001177843, intron 2 of 23)	56407.0	NM_001177843	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-151625915-4	chr1	151625801	151626001	+	796.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022018, intron 1 of 13)	L1MD|LINE|L1	54528.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-83748063-4	chr8	83747973	83748173	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6762.0	NM_001163031	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	5.73633016649395	5.4751194857536	6.39887232320726	6.01774709931115	5.67994016353082	5.51023341202016	5.89111632441505	5.1707813543568	-0.405699053541552	0.148052519455693	0.598403537954644
Merged-chr8-60969272-2	chr8	60969172	60969372	+	718.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_007711, intron 1 of 11)	intron (NM_007711, intron 1 of 11)	14039.0	NM_173873	12725.0	Mm.25263	NM_007711	ENSMUSG00000004319	Clcn3	Clc3	chloride channel, voltage-sensitive 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-40511317-4	chr8	40511228	40511428	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033560)	promoter-TSS (NM_033560)	426.0	NM_001271543	18983.0	Mm.272551	NM_011135	ENSMUSG00000031601	Cnot7	AU022737|CAF-1|Caf1|Pop2	CCR4-NOT transcription complex, subunit 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-77910208-2	chr10	77910108	77910308	+	639.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_138301, exon 34 of 34)	exon (NM_138301, exon 34 of 34)	-7672.0	NM_145152	237387.0	Mm.133301	NM_145152	ENSMUSG00000051652	Lrrc3	1300011L04Rik|C21orf102	leucine rich repeat containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-40139843-4	chr10	40139766	40139966	+	892.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 1 of 5)	intron (NM_001114332, intron 1 of 5)	2388.0	NM_028247	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-47354291-4	chr14	47354185	47354385	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19575.0	NM_010705	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	5.46660846403381	5.2062081943644	5.04970870741547	5.54735993112899	5.62453136303009	5.24014912521966	5.0064621760731	5.12200697769024	-0.0708574015146614	0.811731367580572	0.998431161219273
Merged-chr4-139195980-2	chr4	139195880	139196080	+	967.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	1869.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	-0.21320032576612	-0.334399409313427	-0.338070084865203	0.0562500403630164	-0.209469151572319	-0.333569258017064	-0.337262189757647	0.164081329775095	0.360336319037102	0.878757571189682	1
Merged-chr13-23450645-4	chr13	23450531	23450731	+	879.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	tRNA-Thr-ACY_|tRNA|tRNA	15270.0	NM_013483	12231.0	Mm.1420	NM_013483	ENSMUSG00000000706	Btn1a1	Btn	butyrophilin, subfamily 1, member A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134535005-4	chr6	134534846	134535046	+	918.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008514, intron 2 of 22)	intron (NM_008514, intron 2 of 22)	31967.0	NM_008514	16974.0	Mm.321990	NM_008514	ENSMUSG00000030201	Lrp6	C030016K15Rik|Cd|Gw|ska26|ska<m26Jus>|skax26	low density lipoprotein receptor-related protein 6	protein-coding	2.96125352317404	3.34035037327053	2.98815458184151	4.28501934940353	4.03393073626168	3.82512622852821	3.62375739033464	3.73124109241635	0.428977880769929	0.436132626236591	0.908037815175837
Merged-chr15-62057634-4	chr15	62057525	62057725	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132746, intron 1 of 6)	L1MB4|LINE|L1	18368.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81534139-4	chr15	81534042	81534242	+	939.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-52072.0	NM_177821	328572.0	Mm.258397	NM_177821	ENSMUSG00000055024	Ep300	A430090G16|A730011L11|KAT3B|p300|p300 HAT	E1A binding protein p300	protein-coding	2.50870740000585	3.49743671022002	2.84856304962953	1.53980857171526	3.39641300313401	3.27864349645627	2.8714150000742	3.15637620274797	0.718229095417953	0.331104181940746	0.83197671091297
Merged-chr4-120885400-4	chr4	120885301	120885501	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_182929, intron 4 of 7)	B4A|SINE|B4	30602.0	NM_182929	242662.0	Mm.192502	NM_182929	ENSMUSG00000032890	Rims3	A730060M23Rik|Nim3|Rim3|mKIAA0237	regulating synaptic membrane exocytosis 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-51148560-4	chr2	51148424	51148624	+	808.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028810, intron 1 of 4)	intron (NM_028810, intron 1 of 4)	587.0	NM_028810	74194.0	Mm.46497	NM_028810	ENSMUSG00000017144	Rnd3	2610017M01Rik|AI661404|Arhe|Rhoe	Rho family GTPase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-37759068-3	chr3	37758949	37759149	+	841.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34689.0	NM_198657	381438.0	Mm.490549	NM_198657	ENSMUSG00000058174	Gm5148	EG381438	predicted gene 5148	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16397306-2	chr7	16397206	16397406	+	664.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3890.0	NM_198631	330474.0	Mm.333594	NM_198631	ENSMUSG00000059273	Zc3h4	Bwq1|Gm768|Kiaa1064-hp|mKIAA1064	zinc finger CCCH-type containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-62887007-2	chr10	62886907	62887107	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253857, intron 1 of 12)	CpG	317.0	NM_001253857	52463.0	Mm.17774	NM_027384	ENSMUSG00000047146	Tet1	2510010B09Rik|AA517754|BB001228|Cxxc6|D10Ertd17e|LCX|mKIAA1676	tet methylcytosine dioxygenase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-64920364-2	chr17	64920264	64920464	+	688.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-84293.0	NM_030031	78057.0	Mm.109380	NM_030031	ENSMUSG00000024088	4930583I09Rik	-	RIKEN cDNA 4930583I09 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-74909314-2	chr7	74909214	74909414	+	751.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-120897.0	NR_131122	75205.0	Mm.399304	NR_131122	ENSMUSG00000108803	4930533N22Rik	Gm44904	RIKEN cDNA 4930533N22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120567911-2	chr8	120567811	120568011	+	730.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_198671, exon 6 of 16)	exon (NM_198671, exon 6 of 16)	21164.0	NM_178856	272551.0	Mm.275910	NM_178856	ENSMUSG00000031821	Gins2	2210013I18Rik|4833427B12Rik|AI323585|Pfs2	GINS complex subunit 2 (Psf2 homolog)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16415448-2	chr7	16415348	16415548	+	556.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198631, intron 1 of 13)	B1_Mur1|SINE|Alu	14252.0	NM_198631	330474.0	Mm.333594	NM_198631	ENSMUSG00000059273	Zc3h4	Bwq1|Gm768|Kiaa1064-hp|mKIAA1064	zinc finger CCCH-type containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-12542271-4	chr13	12542188	12542388	+	980.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21838.0	NM_133643	171211.0	Mm.159671	NM_133643	ENSMUSG00000095105	Edaradd	1810032E07Rik|5830469M23Rik|A630043P06|cr	EDAR (ectodysplasin-A receptor)-associated death domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-33005589-3	chr5	33005491	33005691	+	905.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13225.0	NM_011738	22629.0	Mm.332314	NM_011738	ENSMUSG00000018965	Ywhah	-	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-51729077-4	chr15	51728962	51729162	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	136399.0	NM_080635	68135.0	Mm.289800	NM_080635	ENSMUSG00000022312	Eif3h	1110008A16Rik|40kD|9430017H16Rik|EIF3-P40|EIF3-gamma|Eif3s3	eukaryotic translation initiation factor 3, subunit H	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-137293319-3	chr3	137293206	137293406	+	928.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47772.0	NM_001163522	59308.0	Mm.27343	NM_016885	ENSMUSG00000054690	Emcn	0610012K22Rik|AI315669|Muc14	endomucin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-77467282-4	chr11	77467185	77467385	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_139128, exon 5 of 10)	exon (NM_139128, exon 5 of 10)	3372.0	NM_139130	216961.0	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-116894786-4	chr2	116894684	116894884	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5368.0	NR_040336	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-3290418-4	chr7	3290329	3290529	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016969)	promoter-TSS (NM_016969)	-126.0	NM_016969	50918.0	Mm.29874	NM_016969	ENSMUSG00000068566	Myadm	D7Wsu62e	myeloid-associated differentiation marker	protein-coding	5.36873386470761	5.45437549934937	5.07000467051454	4.42990004151114	5.22116930994642	4.6244900526027	4.87071524095688	4.39856525574478	-0.374904500449248	0.295352868856245	0.7986401962885
Merged-chr17-24693552-2	chr17	24693452	24693652	+	830.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_023040, exon 3 of 3)	3' UTR (NM_023040, exon 3 of 3)	2604.0	NM_023040	11692.0	Mm.28124	NM_023040	ENSMUSG00000040888	Gfer	Alr|ERV1	growth factor, augmenter of liver regeneration	protein-coding	-0.0685183074673263	-0.198208866866864	-0.203001363836162	0.0994722490873689	-0.0643885140095992	-0.197128652095458	-0.201944282571211	0.603804807956702	1.47329091161822	0.510964945364365	1
Merged-chr12-111458780-4	chr12	111458679	111458879	+	885.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16118.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-54554431-4	chr14	54554328	54554528	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145462)	promoter-TSS (NM_145462)	-67.0	NM_145462	219072.0	Mm.202152	NM_145462	ENSMUSG00000022177	Haus4	9430093H08Rik|AU016300|D14Ertd500e	HAUS augmin-like complex, subunit 4	protein-coding	5.72237260559733	5.98490676324822	5.29617803828975	5.39993601288547	5.02769050699089	3.57885648080712	5.96443440517201	5.45025015751243	-0.431805419762858	0.268673058565011	0.771990954092706
Merged-chr7-4829763-2	chr7	4829663	4829863	+	576.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_172737, exon 6 of 6)	exon (NM_172737, exon 6 of 6)	14933.0	NM_001290291	232813.0	Mm.44666	NM_172737	ENSMUSG00000053550	Shisa7	ckamp59	shisa family member 7	protein-coding	-2.18233058068552	-2.15536956715525	-2.16352280018114	-2.04193253143548	-2.18043796738662	-2.15360272754651	-2.16167708693786	-2.16902129354933	-0.683654500252594	0.846597994014493	1
Merged-chr4-53264004-4	chr4	53263905	53264105	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033139, intron 1 of 1)	intron (NR_033139, intron 1 of 1)	1487.0	NR_033140	381524.0	Mm.23351	NM_001033454	ENSMUSG00000086712	AI427809	Gm1659	expressed sequence AI427809	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-96706575-2	chr9	96706475	96706675	+	713.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359959, intron 2 of 2)	intron (NM_001359959, intron 2 of 2)	12870.0	NM_001359960	245007.0	Mm.485954	NM_175537	ENSMUSG00000040433	Zbtb38	A930014K01Rik|CIBZ	zinc finger and BTB domain containing 38	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85452969-2	chr12	85452869	85453069	+	727.416687	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-20921.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-31611214-3	chr15	31611149	31611349	+	827.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356313, intron 5 of 5)	intron (NM_001356313, intron 5 of 5)	9133.0	NM_001356313	68073.0	Mm.119185	NM_026546	ENSMUSG00000039065	Fam173b	A930016P21Rik|AA987072	family with sequence similarity 173, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-149692663-3	chr5	149692546	149692746	+	992.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081204, intron 1 of 14)	intron (NM_001081204, intron 1 of 14)	14389.0	NM_001081204	381694.0	Mm.45060	NM_001081204	ENSMUSG00000051950	B3glct	B3galtl|Gm1057	beta-3-glucosyltransferase	protein-coding	0.836761597667395	0.488161280225484	0.480790262707625	1.00142675404857	0.943391137085138	0.489822333618632	0.809812364619703	1.00847488791545	0.575832930425251	0.73085124472077	1
Merged-chr8-110619373-4	chr8	110619270	110619470	+	960.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151675, intron 1 of 17)	intron (NR_151675, intron 1 of 17)	803.0	NR_151675	234729.0	Mm.274894	NM_146216	ENSMUSG00000010936	Vac14	AA959718|BC032215|D8Wsu151e|Tax1bp2|Trx|ingls	Vac14 homolog (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-85391440-2	chr9	85391340	85391540	+	640.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64290.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-124250999-4	chr8	124250900	124251100	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139272, intron 1 of 15)	intron (NM_139272, intron 1 of 15)	19606.0	NM_139272	108148.0	Mm.33808	NM_139272	ENSMUSG00000089704	Galnt2	AI480629	polypeptide N-acetylgalactosaminyltransferase 2	protein-coding	5.34633872315577	5.41543645299994	5.66612697475845	5.60404379065813	4.35458877703036	4.99750746969214	4.70499301807951	4.29816796928113	-1.07301386957881	0.000665818157405299	0.0140312990384346
Merged-chr4-59362806-4	chr4	59362686	59362886	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163288, intron 10 of 16)	intron (NM_001163288, intron 10 of 16)	75847.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	3.03135462608647	3.22493160319934	2.44976990776544	3.11417130321019	3.24948171344276	2.55370930677414	2.11915131343486	3.04919362500045	-0.290030936584293	0.679255019689412	0.99525161242239
Merged-chr2-167684167-2	chr2	167684067	167684267	+	950.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-4748.0	NM_009883	12608.0	Mm.439656	NM_009883	ENSMUSG00000056501	Cebpb	C/EBPbeta|CRP2|IL-6DBP|LAP|LIP|NF-IL6|NF-M|Nfil6	CCAAT/enhancer binding protein (C/EBP), beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-90247317-3	chr5	90247224	90247424	+	849.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198010, intron 27 of 32)	ORR1A2-int|LTR|ERVL-MaLR	-23328.0	NM_001163456	231430.0	Mm.319697	NM_001033310	ENSMUSG00000035505	Cox18	BC038311	cytochrome c oxidase assembly protein 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-22477790-4	chr8	22477720	22477920	+	663.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001012667)	promoter-TSS (NM_001012667)	-941.0	NM_001146117	102032.0	Mm.378231	NM_001012667	ENSMUSG00000031534	Smim19	AI316807|BG694986|EST-c39	small integral membrane protein 19	protein-coding	1.34095414921478	1.39090992823085	1.68154897376029	0.99971611005906	1.24042182054457	0.834139176880205	1.69700342884372	0.808598849616797	-0.637837428840152	0.63720487768948	0.982417279970648
Merged-chr1-154103227-3	chr1	154103134	154103334	+	796.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-97953.0	NM_001204908	100503355.0	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	Gm10178|Gm203	zinc finger protein 648	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-153501252-2	chr1	153501152	153501352	+	756.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13592.0	NM_007842	13211.0	Mm.20000	NM_007842	ENSMUSG00000042699	Dhx9	AI326842|Ddx9|HEL-5|NDHII|RHA|mHEL-5	DEAH (Asp-Glu-Ala-His) box polypeptide 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-90067593-4	chr9	90067552	90067752	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001312649, intron 7 of 10)	intron (NM_001312649, intron 7 of 10)	13385.0	NM_001312649	13036.0	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70646039-2	chr11	70645939	70646139	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_024211, intron 2 of 7)	intron (NM_024211, intron 2 of 7)	1000.0	NM_024211	67863.0	Mm.296082	NM_024211	ENSMUSG00000014606	Slc25a11	2310022P18Rik|2oxoc	solute carrier family 25 (mitochondrial carrier oxoglutarate carrier), member 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-23633703-4	chr11	23633595	23633795	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347242)	promoter-TSS (NM_001347242)	-64.0	NM_027860	71675.0	Mm.48031	NM_027860	ENSMUSG00000042208	0610010F05Rik	Kiaa1841|mKIAA1841	RIKEN cDNA 0610010F05 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-91624972-2	chr17	91624872	91625072	+	600.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-532170.0	NM_020252	18189.0	Mm.478418	NM_020252	ENSMUSG00000024109	Nrxn1	1700062G21Rik|9330127H16Rik|A230068P09Rik|mKIAA0578	neurexin I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-38392768-2	chr16	38392668	38392868	+	641.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30578.0	NM_022318	64082.0	Mm.390856	NM_022318	ENSMUSG00000022803	Popdc2	AV006127|Pop2	popeye domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-155006747-4	chr1	155006647	155006847	+	997.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	76517.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-35649241-4	chr7	35649085	35649285	+	721.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-1703.0	NM_019746	56330.0	Mm.371609	NM_019746	ENSMUSG00000030417	Pdcd5	2200003D22Rik|AA408513|Tfar19	programmed cell death 5	protein-coding	3.1831358686996	4.05944893753929	2.80069273253863	2.96809868204699	3.49660235136928	3.8306679263744	3.29601579990454	3.73051484254887	0.395003929615297	0.491060921616987	0.934407211497242
Merged-chr1-74313548-4	chr1	74313472	74313672	+	817.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039509, intron 2 of 9)	intron (NM_001039509, intron 2 of 9)	-9236.0	NM_027154	69660.0	Mm.261182	NM_027154	ENSMUSG00000006301	Tmbim1	2310061B02Rik|AA960455|AU024746|C78899|RECS1|Tmbib1|mKIAA4161	transmembrane BAX inhibitor motif containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-8611330-2	chr4	8611230	8611430	+	616.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11A|LTR|ERVK	75686.0	NM_021518	59021.0	Mm.397471	NM_021518	ENSMUSG00000047187	Rab2a	9330148M11Rik|C80220|Rab2	RAB2A, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-17949836-2	chr13	17949736	17949936	+	787.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-5619.0	NM_019491	56044.0	Mm.27348	NM_019491	ENSMUSG00000008859	Rala	3010001O15Rik|AW322615|Ral|Rasl1	v-ral simian leukemia viral oncogene A (ras related)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-69124737-2	chr8	69124637	69124837	+	982.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	16216.0	NM_199364	211134.0	Mm.409446	NM_199364	ENSMUSG00000036306	Lzts1	F37|FEZ1|PSD-Zip70	leucine zipper, putative tumor suppressor 1	protein-coding	-0.300368188541326	-0.288350096806491	0.141057569848397	-0.295343448969645	0.157737392031457	0.0565648709006415	-0.291433264693092	-0.294813141795604	0.874231453914336	0.725740097579567	1
Merged-chr7-127253389-2	chr7	127253289	127253489	+	541.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360916, intron 2 of 2)	intron (NM_001360916, intron 2 of 2)	7278.0	NM_023203	66422.0	Mm.29898	NM_023203	ENSMUSG00000042462	Dctpp1	2410015N17Rik|AI854235|RS21-C6	dCTP pyrophosphatase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-62017961-1	chr12	62017861	62018061	+	554.0	f1_balb.idr	Intergenic	RLTR45|LTR|ERVK	494794.0	NM_001310586	238205.0	Mm.28802	NM_178714	ENSMUSG00000035653	Lrfn5	AI427653|AI604817|C130061B21|mKIAA4208	leucine rich repeat and fibronectin type III domain containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-92383591-2	chr16	92383491	92383691	+	654.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_105054)	promoter-TSS (NR_105054)	-908.0	NR_105054	101056236.0	Mm.149108	NR_105054		Gm29805	-	predicted gene, 29805	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3420684-4	chr12	3420578	3420778	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030694, intron 1 of 2)	intron (NR_030694, intron 1 of 2)	6069.0	NR_030694	100043040.0	Mm.415417	NR_030694	ENSMUSG00000071456	1110002L01Rik	-	RIKEN cDNA 1110002L01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41016091-4	chr19	41015993	41016193	+	955.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4415.0	NR_155302	100861913.0	Mm.35204	NR_155302		C330026H20Rik	-	RIKEN cDNA C330026H20 gene	ncRNA	3.42676851394064	3.98213981143552	3.55139883375466	3.05746428699561	3.93199183052126	3.78516521493628	3.88348652743669	4.11519505597126	0.581357539210565	0.238205858196185	0.734745357461384
Merged-chr16-31024503-4	chr16	31024388	31024588	+	801.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198626, intron 2 of 3)	intron (NM_198626, intron 2 of 3)	56944.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	2.44655679996578	2.92380327391617	2.42102592276009	2.5725393786976	2.25964296831004	2.38184985625178	2.43910523480547	2.48186422669972	-0.471855501774977	0.532706240551447	0.952082138848632
Merged-chr17-56618516-2	chr17	56618416	56618616	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028782, intron 8 of 17)	intron (NM_028782, intron 8 of 17)	5121.0	NM_018730	54217.0	Mm.11376	NM_018730	ENSMUSG00000057863	Rpl36	-	ribosomal protein L36	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-129018911-1	chr5	129018811	129019011	+	1000.0	f1_balb.idr	Intergenic	Intergenic	-1245.0	NM_009391	19384.0	Mm.297440	NM_009391	ENSMUSG00000029430	Ran	-	RAN, member RAS oncogene family	protein-coding	0.448229995144133	0.49781448108209	0.482103313899581	1.18620957559501	2.11258162642457	0.50129114959712	1.25092308092378	0.704752870737561	2.38745281551817	0.145736477861158	0.596091332081597
Merged-chr1-34855226-4	chr1	34855148	34855348	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357425, intron 2 of 8)	MTD-int|LTR|ERVL-MaLR	5259.0	NM_001357425	226971.0	Mm.292751	NM_145516	ENSMUSG00000026123	Plekhb2	2310009M15Rik|AU018239|Evt2|Phdc|evt-2	pleckstrin homology domain containing, family B (evectins) member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-83166621-2	chr8	83166521	83166721	+	863.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111304, intron 1 of 20)	intron (NM_001111304, intron 1 of 20)	1269.0	NM_027758	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	-0.499940950918087	-0.487518524828365	0.0891561271406926	-0.494726023626598	-0.499164980458282	-0.486601867615524	0.100277611126392	-0.494177430718284	0.0410194320726077	0.98816738256539	1
Merged-chr1-87935287-2	chr1	87935187	87935387	+	871.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_177646, intron 21 of 29)	intron (NM_177646, intron 21 of 29)	73264.0	NM_001198573	227334.0	Mm.80484	NM_001033291	ENSMUSG00000005501	Usp40	B230215L03Rik|C730029K03	ubiquitin specific peptidase 40	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69130422-1	chr11	69130322	69130522	+	642.0	f1_c57bl6.idr	intron (NM_011786, intron 5 of 14)	intron (NM_011786, intron 5 of 14)	4045.0	NM_011786	23801.0	Mm.41989	NM_011786	ENSMUSG00000020892	Aloxe3	e-LOX-3|eLOX-3	arachidonate lipoxygenase 3	protein-coding	2.37170434971787	1.56245417891985	1.27815601328988	0.974910956626501	1.83197835892436	3.11992480646417	1.86993437725264	0.979476827739734	1.2195012331046	0.295360185695706	0.7986401962885
Merged-chr11-105181331-4	chr11	105181215	105181415	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001294334)	promoter-TSS (NM_001294334)	118.0	NR_027956	73431.0	Mm.351426	NM_028539		1700052K11Rik	AI840954	RIKEN cDNA 1700052K11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-73682892-4	chr12	73682793	73682993	+	980.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008856, intron 2 of 13)	intron (NM_008856, intron 2 of 13)	98097.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-19875535-2	chr10	19875435	19875635	+	705.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161825, intron 7 of 8)	intron (NM_001161825, intron 7 of 8)	-24076.0	NM_029529	76157.0	Mm.74324	NM_029529	ENSMUSG00000050473	Slc35d3	6230421J19Rik|Frcl1	solute carrier family 35, member D3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32134228-4	chr2	32134100	32134300	+	793.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16948.0	NM_172661	227723.0	Mm.25504	NM_172661	ENSMUSG00000039262	Prrc2b	5830434P21Rik|AI173903|Bat2l|Bat2l1|D430039P21|mKIAA0515	proline-rich coiled-coil 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26509646-4	chr17	26509556	26509756	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1184.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-150836967-4	chr5	150836859	150837059	+	993.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-115648.0	NM_013823	16591.0	Mm.6500	NM_013823	ENSMUSG00000058488	Kl	alpha-kl	klotho	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-62385596-4	chr15	62385479	62385679	+	905.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-166128.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	-1.84362945061595	-1.81329140012928	-1.67810947190254	-1.83000206547234	-1.84149977556685	-1.81130325271815	-1.67603257143677	-1.82865309133977	0.037684011990387	0.991491645451152	1
Merged-chr15-98723901-2	chr15	98723801	98724001	+	631.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_153518)	TTS (NM_153518)	3726.0	NM_001357893	66120.0	Mm.30729	NM_024169	ENSMUSG00000003355	Fkbp11	1110002O23Rik|FKBP-11	FK506 binding protein 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-65990755-4	chr3	65990658	65990858	+	939.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	HAL1|LINE|L1	-32509.0	NM_001355432	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	1.49077627154332	1.0522197090712	1.03107582161628	1.82864258761583	1.35811291012063	2.37683110310194	1.77599208225481	2.13461937057663	1.73517677984983	0.136427084089107	0.576515996240423
Merged-chr17-5721989-2	chr17	5721889	5722089	+	555.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 5 of 8)	intron (NM_146073, intron 5 of 8)	-76668.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118675310-2	chr9	118675151	118675351	+	911.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 11 of 27)	RMER1B|Other|Other	-36441.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	1.60227385700088	1.41987877440688	1.15111355665252	2.13923828355014	2.12753903810571	2.19735139079974	1.58184915107444	2.15069412027753	1.13653242063118	0.284665822459418	0.788780724680855
Merged-chr17-25011902-2	chr17	25011802	25012002	+	619.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_020608, intron 2 of 20)	intron (NM_020608, intron 2 of 20)	3328.0	NM_020608	57354.0	Mm.328854	NM_020608	ENSMUSG00000038002	Cramp1l	5830477H08Rik|AI256853|AI790734|Cramp1|Tce4|mKIAA1426	cramped chromatin regulator homolog 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-89343562-2	chr15	89343462	89343662	+	882.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	9089.0	NM_019977	56727.0	Mm.158200	NM_019977	ENSMUSG00000022613	Miox	0610009I10Rik|AI314022|Aldrl6|C85427|RSOR	myo-inositol oxygenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-79036113-3	chr18	79036048	79036248	+	930.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053099, intron 2 of 5)	intron (NM_053099, intron 2 of 5)	73243.0	NM_053099	240427.0	Mm.312871	NM_053099	ENSMUSG00000024548	Setbp1	C130092E12|Seb|mKIAA0437	SET binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-14276173-4	chr9	14276065	14276265	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030261)	promoter-TSS (NM_030261)	-136.0	NM_030261	75747.0	Mm.325126	NM_030261	ENSMUSG00000032009	Sesn3	5630400E15Rik|BC003348|SEST3	sestrin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-78373975-4	chr17	78373846	78374046	+	974.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015800, intron 16 of 16)	intron (NM_015800, intron 16 of 16)	44206.0	NM_001285949	225020.0	Mm.236835	NM_199448	ENSMUSG00000056121	Fez2	9030616F16|D17Ertd315e	fasciculation and elongation protein zeta 2 (zygin II)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135891696-4	chr4	135891592	135891792	+	915.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-3497.0	NM_009924	12802.0	Mm.297251	NM_009924	ENSMUSG00000062585	Cnr2	CB-2|CB2|CB2-R	cannabinoid receptor 2 (macrophage)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-92183979-4	chr6	92183850	92184050	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025578)	promoter-TSS (NM_025578)	73.0	NM_025578	64658.0	Mm.87062	NM_025578	ENSMUSG00000014551	Mrps25	2810429N01Rik|Rpms25	mitochondrial ribosomal protein S25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59728331-4	chr15	59728238	59728438	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	66621.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-43187509-4	chr5	43187404	43187604	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028417, intron 5 of 7)	ORR1F|LTR|ERVL-MaLR	-45959.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84703664-2	chr8	84703618	84703818	+	876.625	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001081981)	TTS (NM_001081981)	2261.0	NM_008535	17095.0	Mm.4925	NM_008535	ENSMUSG00000034041	Lyl1	Lyl-1|bHLHa18	lymphoblastomic leukemia 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-59332741-4	chr2	59332638	59332838	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 11 of 20)	intron (NM_175464, intron 11 of 20)	53944.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-53861500-1	chr18	53861400	53861600	+	588.0	f0_balb.idr	promoter-TSS (NM_152809)	promoter-TSS (NM_152809)	-613.0	NM_152809	70425.0	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69681352-3	chr11	69681264	69681464	+	938.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163571, intron 1 of 10)	intron (NM_001163571, intron 1 of 10)	606.0	NM_030702	80886.0	Mm.284592	NM_030702	ENSMUSG00000005204	Senp3	AA408656|Smt3ip|Smt3ip1	SUMO/sentrin specific peptidase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-30961603-3	chr4	30961512	30961712	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	297016.0	NR_040655	75332.0	Mm.108636	NR_040655		4930556G01Rik	-	RIKEN cDNA 4930556G01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33923095-4	chr16	33922979	33923179	+	890.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 10 of 14)	intron (NM_001145884, intron 10 of 14)	43959.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118694656-2	chr9	118694556	118694756	+	728.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 14 of 27)	intron (NM_133721, intron 14 of 27)	-17036.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	2.6499487399871	1.31720097750529	2.34306144759074	2.15737751445059	3.01284873908116	2.17828635522083	1.29107700045823	2.16890364453301	0.245742065865142	0.80867608936076	0.998431161219273
Merged-chr11-69994120-2	chr11	69994006	69994206	+	828.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_019749, intron 3 of 3)	B1_Mur4|SINE|Alu	-1660.0	NM_001291125	78246.0	Mm.20805	NM_030064	ENSMUSG00000018572	Phf23	JUNE-1	PHD finger protein 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5635578-2	chr17	5635478	5635678	+	699.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	142978.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119045261-2	chr11	119045161	119045361	+	784.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-4348.0	NM_013926	30951.0	Mm.99953	NM_013926	ENSMUSG00000025578	Cbx8	Pc3	chromobox 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-32809484-1	chr5	32809384	32809584	+	583.0	f1_balb.idr	intron (NM_194340, intron 9 of 10)	PB1|SINE|Alu	-23858.0	NM_177298	320951.0	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	0.114936840308497	0.926454828937793	0.130796689685724	0.12487173990602	0.544163350675012	0.939792255530864	0.132482565727754	0.125909960352735	0.551811925985694	0.792388106113862	1
Merged-chr15-80711872-4	chr15	80711695	80711895	+	885.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144812, intron 1 of 24)	CpG	482.0	NM_144812	213988.0	Mm.131328	NM_144812	ENSMUSG00000047888	Tnrc6b	2700090M07Rik|A730065C02Rik|AI848765|D230019K20Rik	trinucleotide repeat containing 6b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-25168866-4	chr18	25168781	25168981	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001142698)	promoter-TSS (NM_001142698)	-4.0	NM_001004361	66648.0	Mm.263189	NM_001004361	ENSMUSG00000024269	Tpgs2	5730437P09Rik|5730494M16Rik|AI666318|Pgs2	tubulin polyglutamylase complex subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-91165374-2	chr6	91165274	91165474	+	616.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_144919, intron 3 of 9)	intron (NM_144919, intron 3 of 9)	8559.0	NM_144919	232232.0	Mm.206218	NM_144919	ENSMUSG00000034245	Hdac11	-	histone deacetylase 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-109923293-2	chr12	109923193	109923393	+	587.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	175415.0	NR_037233	100499517.0		NR_037233	ENSMUSG00000093351	Mir3072	mir-3072|mmu-mir-3072	microRNA 3072	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116846778-2	chr11	116846678	116846878	+	763.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028865, intron 1 of 4)	intron (NM_028865, intron 1 of 4)	3263.0	NM_028865	74319.0	Mm.429312	NM_028865	ENSMUSG00000090266	Mettl23	1110005A03Rik|1500035B17Rik|4933424L15Rik	methyltransferase like 23	protein-coding	-0.378862047495912	-0.364870876367801	-0.369445668913775	0.367602648756389	-0.377986272553064	-0.363840813843051	-0.368435933903431	0.185811407421716	-0.553727429006611	0.835242855312051	1
Merged-chr7-79793002-5	chr7	79792937	79793137	+	800.085693	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008588, exon 1 of 2)	exon (NM_008588, exon 1 of 2)	553.0	NM_008588	17292.0	Mm.1404	NM_008588	ENSMUSG00000030544	Mesp1	bHLHc5	mesoderm posterior 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-139424125-3	chr1	139424020	139424220	+	828.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172643, exon 2 of 11)	exon (NM_172643, exon 2 of 11)	1737.0	NM_172643	226470.0	Mm.119711	NM_172643	ENSMUSG00000033964	Zbtb41	8430415N23Rik|9430031N01|9830132G07Rik|AI316857	zinc finger and BTB domain containing 41	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-94272852-2	chr2	94272752	94272952	+	760.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11453.0	NR_030431	735259.0		NR_030431	ENSMUSG00000076335	Mir670	Mirn670|mir-670|mmu-mir-670	microRNA 670	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114726042-2	chr11	114725942	114726142	+	588.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	-1370.0	NM_001034878	432611.0	Mm.212764	NM_001034878	ENSMUSG00000034706	Dnaic2	C030015H18Rik|Dnai2|Gm728|b2b3405Clo	dynein, axonemal, intermediate chain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-75405984-2	chr9	75405884	75406084	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_015806, intron 1 of 5)	B2_Mm2|SINE|B2	3375.0	NM_027418	50772.0	Mm.480076	NM_015806	ENSMUSG00000042688	Mapk6	2610021I23Rik|D130053K17Rik|Erk3|Mapk4|Mapk63|Prkm4|Prkm6	mitogen-activated protein kinase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-39129947-2	chr6	39129847	39130047	+	765.833374	f1_balb.idr|f1_c57bl6.idr	intron (NR_045813, intron 1 of 3)	intron (NR_045813, intron 1 of 3)	11474.0	NR_045813	75379.0	Mm.348014	NR_045813	ENSMUSG00000073144	4930599N23Rik	-	RIKEN cDNA 4930599N23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118762265-4	chr9	118762187	118762387	+	871.587524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 1 of 13)	intron (NM_001113514, intron 1 of 13)	50595.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-72760493-4	chr12	72760395	72760595	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008910)	promoter-TSS (NM_008910)	-716.0	NM_008910	19042.0	Mm.261045	NM_008910	ENSMUSG00000021096	Ppm1a	2310003C21Rik|2900017D14Rik|AI427932|AU017636|MMPa-2|MPPa-1	protein phosphatase 1A, magnesium dependent, alpha isoform	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-172217318-4	chr1	172217190	172217390	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009813, intron 2 of 10)	intron (NM_009813, intron 2 of 10)	2605.0	NM_009813	12372.0	Mm.12829	NM_009813	ENSMUSG00000007122	Casq1	CSQ|CSQ-1|CSQ1|sCSQ	calsequestrin 1	protein-coding	2.70926304535596	2.92103777912638	3.23299551420942	3.68002358800632	2.92493269360126	3.17284515688168	3.34170725009855	2.7567961929895	-0.219082629809218	0.72709262986813	0.998431161219273
Merged-chr7-84593259-1	chr7	84593159	84593359	+	647.0	f1_balb.idr	exon (NM_010176, exon 10 of 14)	exon (NM_010176, exon 10 of 14)	12683.0	NM_010176	14085.0	Mm.3798	NM_010176	ENSMUSG00000030630	Fah	swst	fumarylacetoacetate hydrolase	protein-coding	0.09342263727108	0.601653109977944	0.105326417899399	0.100851159411476	0.0945276415525771	0.611201369589024	0.682452062028403	0.267771940018224	1.38291164724464	0.502012593990251	1
Merged-chr3-28109519-3	chr3	28109464	28109664	+	834.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008875, intron 20 of 25)	intron (NM_008875, intron 20 of 25)	125393.0	NM_008875	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-151958672-4	chr1	151958571	151958771	+	971.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197990, intron 3 of 5)	L1M3|LINE|L1	131649.0	NM_197990	69399.0	Mm.278031	NM_197990	ENSMUSG00000032666	1700025G04Rik	2610510E02Rik|2900042O04Rik	RIKEN cDNA 1700025G04 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-154998043-3	chr4	154997969	154998169	+	709.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356470, intron 10 of 22)	RLTR28|LTR|ERVL	12915.0	NM_175556	269615.0	Mm.379458	NM_175556	ENSMUSG00000029055	Plch2	A930027K05Rik|PLCeta2|Plc-eta2|Plcl4	phospholipase C, eta 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-105016408-3	chr3	105016308	105016508	+	907.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030249, intron 3 of 5)	L1ME2|LINE|L1	36545.0	NM_001163332	80281.0	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-103347396-4	chr15	103347282	103347482	+	842.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001314041, intron 28 of 30)	intron (NM_001314041, intron 28 of 30)	3143.0	NR_105928	102466775.0		NR_105928	ENSMUSG00000098419	Mir6963	Gm27724|mmu-mir-6963	microRNA 6963	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-121462356-1	chr10	121462256	121462456	+	1000.0	f1_balb.idr	intron (NM_138956, intron 1 of 4)	intron (NM_138956, intron 1 of 4)	13894.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	2.26922052893645	0.646317626228243	0.887171026471912	1.22754951071124	2.13177835338753	0.650805457152628	0.630497978068038	0.612520427117358	-0.587104793834252	0.70440360901665	0.998431161219273
Merged-chr3-108256171-4	chr3	108256072	108256272	+	998.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011967)	promoter-TSS (NM_011967)	-754.0	NM_011967	26442.0	Mm.208883	NM_011967	ENSMUSG00000068749	Psma5	ZETA	proteasome (prosome, macropain) subunit, alpha type 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32362204-2	chr2	32362104	32362304	+	939.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028412)	promoter-TSS (NM_028412)	-806.0	NM_001252538	68379.0	Mm.170508	NM_028412	ENSMUSG00000039205	Ciz1	0610038H21Rik|2900056O04Rik|LSFR1|ZNF356	CDKN1A interacting zinc finger protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19865348-2	chr7	19865248	19865448	+	607.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-4049.0	NM_001033419	330483.0	Mm.260192	NM_001033419	ENSMUSG00000014686	Ceacam16	Gm769	carcinoembryonic antigen-related cell adhesion molecule 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-170330006-4	chr2	170329908	170330108	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26353.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-111289669-4	chr9	111289569	111289769	+	904.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	17824.0	NM_175266	77781.0	Mm.209005	NM_175266	ENSMUSG00000046785	Epm2aip1	A930003G21Rik|mKIAA0766	EPM2A (laforin) interacting protein 1	protein-coding	3.20992832242754	3.15109916623484	3.20464476161394	2.96231561402418	2.56509226833803	2.1162427759678	2.39722632091987	1.98452600585617	-1.67067111596089	0.0189114941811506	0.172766579075212
Merged-chr14-69804862-4	chr14	69804771	69804971	+	997.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153514, intron 1 of 9)	intron (NM_153514, intron 1 of 9)	674.0	NM_153514	246710.0	Mm.102367	NM_153514	ENSMUSG00000022075	Rhobtb2	Dbc2|E130206H14Rik|mKIAA0717	Rho-related BTB domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-97768102-4	chr3	97768012	97768212	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_110360)	promoter-TSS (NR_110360)	-98.0	NR_110360	83679.0	Mm.129840	NM_031401	ENSMUSG00000038170	Pde4dip	4732458A06Rik|9430063L05Rik|C87016|D130016K21Rik|D3Bwg1078e|Usmg4|mKIAA0454	phosphodiesterase 4D interacting protein (myomegalin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71375736-2	chr8	71375636	71375836	+	873.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010150, intron 3 of 3)	CpG	4438.0	NM_001293800	77090.0	Mm.440170	NM_029865	ENSMUSG00000002396	Ocel1	9430098E02Rik|AI326022|AI593544	occludin/ELL domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69257991-4	chr11	69257886	69258086	+	969.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20964.0	NM_008192	14919.0	Mm.291816	NM_008192	ENSMUSG00000020890	Gucy2e	GC-E|GC1|ROS-GC1	guanylate cyclase 2e	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-79669152-5	chr10	79669076	79669276	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_148934)	promoter-TSS (NM_148934)	-234.0	NM_148934	110012.0	Mm.22623	NM_148934	ENSMUSG00000020308	Tpgs1	AV005629|Gm16517|Gtrgeo22|PGs1	tubulin polyglutamylase complex subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-6080956-4	chr15	6080855	6081055	+	862.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36251.0	NR_155429	105245876.0	Mm.128197	NR_155428		Gm41259	-	predicted gene, 41259	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180957267-4	chr1	180957164	180957364	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144794, intron 8 of 22)	MTD|LTR|ERVL-MaLR	14746.0	NM_144794	208795.0	Mm.185518	NM_144794	ENSMUSG00000026519	Tmem63a	BC014795|Tmem64a	transmembrane protein 63a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-37464121-1	chr6	37464021	37464221	+	1000.0	f0_c57.idr	Intergenic	Lx8|LINE|L1	-21973.0	NM_178661	208647.0	Mm.169929	NM_178661	ENSMUSG00000038648	Creb3l2	BBF2H7|C530025K05Rik|SCIRR69	cAMP responsive element binding protein 3-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-11010036-2	chr16	11009936	11010136	+	994.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NR_040518, intron 1 of 2)	RSINE1|SINE|B4	1138.0	NR_040518	100043147.0	Mm.489001	NR_040518	ENSMUSG00000097056	Gm4262	-	predicted gene 4262	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-63927242-2	chr15	63927142	63927342	+	604.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12781.0	NR_029414	74460.0	Mm.390801	NR_029414	ENSMUSG00000100127	Gsdmcl-ps	4933426G20Rik	gasdermin C-like, pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-142878613-2	chr5	142878513	142878713	+	569.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033312, intron 4 of 4)	intron (NM_001033312, intron 4 of 4)	16625.0	NM_001033312	231863.0	Mm.89753	NM_001033312	ENSMUSG00000066640	Fbxl18	AI427077|B130019G13Rik|C330021B20Rik	F-box and leucine-rich repeat protein 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19843272-2	chr7	19843172	19843372	+	798.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8731.0	NM_001270489	100502736.0	Mm.445354	NM_001270489	ENSMUSG00000092216	Gm19345	-	predicted gene, 19345	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-97673066-4	chr15	97672950	97673150	+	997.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32772.0	NM_028003	71919.0	Mm.12255	NM_028003	ENSMUSG00000022466	Rpap3	2310042P20Rik|D15Ertd682e	RNA polymerase II associated protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-32509581-2	chr3	32509481	32509681	+	676.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161818)	promoter-TSS (NM_001161818)	-969.0	NM_001161818	67778.0	Mm.285620	NM_144519	ENSMUSG00000027667	Zfp639	6230400O18Rik|ANC-2H01|ZASC1|Znf639	zinc finger protein 639	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-137631752-2	chr5	137631652	137631852	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_033148, intron 1 of 21)	intron (NR_033148, intron 1 of 21)	2629.0	NR_033148	100316903.0	Mm.200763	NR_033148		Gm20605	Lrch4-sap25	predicted gene 20605	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125378320-4	chr6	125378243	125378443	+	966.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198604, intron 3 of 16)	intron (NM_198604, intron 3 of 16)	2161.0	NM_198604	213522.0	Mm.333396	NM_198604	ENSMUSG00000038167	Plekhg6	BC026778|Gm155	pleckstrin homology domain containing, family G (with RhoGef domain) member 6	protein-coding	2.17705258134118	1.16245811026848	2.05318462062536	1.71817812872455	1.48447052367239	2.00780041114125	1.39790851393632	2.9257255721068	0.714587752121837	0.502932557836972	0.939709016132889
Merged-chr1-51458391-2	chr1	51458291	51458491	+	876.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20008.0	NM_001310548	109019.0	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-18996982-3	chr2	18996841	18997041	+	948.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008845, intron 1 of 9)	intron (NM_008845, intron 1 of 9)	1180.0	NM_008845	18718.0	Mm.313977	NM_008845	ENSMUSG00000026737	Pip4k2a	AW742916|Pip5k2a	phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98318608-2	chr11	98318508	98318708	+	763.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11037.0	NM_010895	18013.0	Mm.4814	NM_010895	ENSMUSG00000038255	Neurod2	Ndrf|bHLHa1	neurogenic differentiation 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-4219642-3	chr11	4219531	4219731	+	890.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028022, intron 2 of 8)	intron (NM_028022, intron 2 of 8)	1380.0	NM_028022	71962.0	Mm.7852	NM_028022	ENSMUSG00000020424	Gatsl3	2410008K03Rik|Castor1	GATS protein-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-68004082-4	chr17	68003954	68004154	+	836.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172964)	promoter-TSS (NM_172964)	54.0	NM_172964	268970.0	Mm.9935	NM_172964	ENSMUSG00000024043	Arhgap28	AU044757|AW550892|E130310N06	Rho GTPase activating protein 28	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-75193232-4	chr8	75193150	75193350	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER20B|LTR|ERVK	-20694.0	NM_029182	75141.0	Mm.179267	NM_029182	ENSMUSG00000034472	Rasd2	4930526B11Rik|AU045414|Rhes|TEM-2|TEM2	RASD family, member 2	protein-coding	1.55352979029581	1.26159807569674	1.36433393402933	1.73679276282826	1.56802878422419	1.08741482873987	0.850380176204939	0.838574022805899	-1.42049798037256	0.288698281421184	0.794304053022689
Merged-chr12-12302015-4	chr12	12301913	12302113	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029758, intron 2 of 12)	intron (NM_029758, intron 2 of 12)	39874.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-71955785-2	chr2	71955685	71955885	+	644.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25430.0	NM_001204167	56508.0	Mm.196153	NM_019688	ENSMUSG00000049044	Rapgef4	1300003D15Rik|5730402K07Rik|6330581N18Rik|EPAC 2|Epac-2|Epac2|mKIAA4040	Rap guanine nucleotide exchange factor (GEF) 4	protein-coding	-0.177733621508433	-0.805752184127899	-0.808838537208662	-0.811215655782965	-0.543043920694761	-0.803068160812789	-0.808158328395888	-0.810800640862464	-1.36685470224649	0.652602213394196	1
Merged-chr15-36852626-3	chr15	36852505	36852705	+	785.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F1|SINE|Alu	-55676.0	NM_001253806	22631.0	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-83597236-4	chr12	83597140	83597340	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183154)	promoter-TSS (NM_183154)	-18.0	NM_001359166	217695.0	Mm.59257	NM_183154	ENSMUSG00000042628	Zfyve1	DFCP1|G630053K23|TAFF1|ZNFN2A1|mKIAA1589	zinc finger, FYVE domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-57645680-4	chr9	57645577	57645777	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007783)	promoter-TSS (NM_007783)	-24.0	NM_007783	12988.0	Mm.21974	NM_007783	ENSMUSG00000032312	Csk	AW212630|p50CSK	c-src tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-83735375-2	chr8	83735322	83735522	+	962.099976	f1_balb.idr|f1_c57bl6.idr	intron (NM_011925, intron 1 of 19)	RLTR11C_MM|LTR|ERVK	5889.0	NM_001163029	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-101296489-2	chr4	101296417	101296617	+	674.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31235.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-62800204-3	chr14	62800103	62800303	+	973.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045503, intron 2 of 6)	MLT2B4|LTR|ERVL	-37487.0	NM_175546	268752.0	Mm.1960	NM_175546	ENSMUSG00000014547	Wdfy2	5830485M08|B130024L21Rik|ProF|ZFYVE22	WD repeat and FYVE domain containing 2	protein-coding	2.8522412408874	2.68036049729267	3.38595095658581	4.01416151029255	2.87720152857959	2.7013238775803	3.41225350132891	4.03287146010913	0.0350341448593824	0.956922156769762	0.998431161219273
Merged-chr10-127561734-6	chr10	127562059	127562259	+	907.075928	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 42 of 88)	intron (NM_008512, intron 42 of 88)	-27600.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	-0.289851946104314	-0.737899168765768	-0.740932179010924	-0.743264539078787	-0.280173431323445	-0.737213951634147	-0.740264187498491	-0.742857569821679	0.0418983010157508	0.98887086484455	1
Merged-chr2-33139451-2	chr2	33139351	33139551	+	570.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290570, intron 16 of 16)	intron (NM_001290570, intron 16 of 16)	-8015.0	NM_001355201	99326.0	Mm.41290	NM_178888	ENSMUSG00000038860	Garnl3	AW120551	GTPase activating RANGAP domain-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-38110801-3	chr16	38110697	38110897	+	977.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347232, intron 1 of 11)	RSINE1|SINE|B4	-21537.0	NR_033221	414072.0	Mm.483602	NR_033221		BC031361	-	cDNA sequence BC031361	ncRNA	4.84317014674432	4.60268417890217	4.5579038111905	5.03488709609821	3.44029759828887	4.20704870551705	4.32679829900896	4.36216535116286	-0.835743998246493	0.0357504961355318	0.267860815550027
Merged-chr9-22494597-2	chr9	22494497	22494697	+	900.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360259, intron 2 of 22)	intron (NM_001360259, intron 2 of 22)	18882.0	NM_181316	319845.0	Mm.176725	NM_178415	ENSMUSG00000035919	Bbs9	E130103I17Rik	Bardet-Biedl syndrome 9 (human)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101072041-2	chr11	101071941	101072141	+	663.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_013792, exon 3 of 6)	exon (NM_013792, exon 3 of 6)	1947.0	NM_013792	27419.0	Mm.95452	NM_013792	ENSMUSG00000001751	Naglu	-	alpha-N-acetylglucosaminidase (Sanfilippo disease IIIB)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-97087424-6	chr5	97087314	97087514	+	963.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_080708, exon 16 of 16)	exon (NM_080708, exon 16 of 16)	24182.0	NM_001359910	231474.0	Mm.332505	NM_198422	ENSMUSG00000055725	Paqr3	6330415A20Rik|AY424292|RKTG	progestin and adipoQ receptor family member III	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-78218636-2	chr16	78218536	78218736	+	700.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36818.0	NR_045698	100503619.0	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-103288512-2	chr11	103288412	103288612	+	708.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21111.0	NM_016896	53859.0	Mm.158981	NM_016896	ENSMUSG00000020941	Map3k14	Nik|aly	mitogen-activated protein kinase kinase kinase 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35422487-2	chr17	35422387	35422587	+	654.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-2360.0	NM_023124	15019.0	Mm.486287	NM_023124		H2-Q8	H-2Q8|MMS10-T|Ms10t|Qa-2|Qa-8|Qa8	histocompatibility 2, Q region locus 8	protein-coding	-0.289851946104314	-0.737899168765768	-0.740932179010924	-0.743264539078787	-0.280173431323445	-0.737213951634147	-0.740264187498491	-0.742857569821679	0.0418983010157508	0.98887086484455	1
Merged-chr7-88319505-5	chr7	88319337	88319537	+	870.820007	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41352.0	NM_001311790	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0.52229821326652	0.393261440462849	1.18861157080867	1.04577135843677	0.369494192330037	0.604219992177598	0.386836129780513	0.837791071438455	-1.53175251358585	0.380320385013179	1
Merged-chr19-32646177-4	chr19	32646072	32646272	+	749.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360403, intron 7 of 11)	intron (NM_001360403, intron 7 of 11)	26167.0	NM_011864	23972.0	Mm.203916	NM_011864	ENSMUSG00000024899	Papss2	1810018P12Rik|AI159688|AtpsU2|Atpsk2|Sk2|bm	3'-phosphoadenosine 5'-phosphosulfate synthase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-143241613-1	chr4	143241513	143241713	+	620.0	f1_c57bl6.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	-28904.0	NM_001256380	110593.0	Mm.332020	NM_001081355	ENSMUSG00000057637	Prdm2	4833427P12Rik|E330024L24Rik|Gm1033|Gm19732|KMT8|Riz|Riz1|Znfpr1c1	PR domain containing 2, with ZNF domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33832846-4	chr16	33832784	33832984	+	861.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 1 of 14)	intron (NM_001145884, intron 1 of 14)	3219.0	NM_001145884	16419.0	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-99984258-2	chr5	99984158	99984358	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-5320.0	NM_001077267	11991.0	Mm.150231	NM_007516	ENSMUSG00000000568	Hnrnpd	Auf1|Hnrpd	heterogeneous nuclear ribonucleoprotein D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-120265961-2	chr1	120265861	120266061	+	861.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133186)	promoter-TSS (NM_133186)	-681.0	NM_133186	68428.0	Mm.181033	NM_133186	ENSMUSG00000026389	Steap3	1010001D01Rik|Tsap6|pHyde	STEAP family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-69178878-4	chr17	69178749	69178949	+	823.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355736, intron 1 of 21)	intron (NM_001355736, intron 1 of 21)	19493.0	NM_001355735	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36670321-4	chr18	36670218	36670418	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164406)	promoter-TSS (NM_001164406)	-7.0	NM_025291	24068.0	Mm.29058	NM_025291	ENSMUSG00000006050	Sra1	AA959952|Sra|Srap|Straa1|Strra1	steroid receptor RNA activator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19235229-4	chr7	19235117	19235317	+	956.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207525, intron 1 of 1)	ID_B1|SINE|B4	6828.0	NM_207525	403187.0	Mm.239583	NM_207525	ENSMUSG00000052214	Opa3	D630048P19Rik|Gm1425|Gm472	optic atrophy 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-56507021-2	chr9	56506921	56507121	+	551.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	88402.0	NM_025812	66867.0	Mm.150856	NM_025812	ENSMUSG00000032329	Hmg20a	1200004E06Rik|5730490E10Rik|Hmgxb1|Ibraf	high mobility group 20A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-151620028-2	chr1	151619928	151620128	+	591.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_022018, intron 1 of 13)	B1F|SINE|Alu	48655.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-51184425-2	chr3	51184337	51184537	+	683.5	f0_c57.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-40010.0	NM_009834	12457.0	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	2.89424474902061	2.85946953678271	2.20925633760862	2.84446151851556	1.91547720604971	2.14120036314399	1.67988967269187	2.29001117075733	-1.60330995092889	0.0516337897334855	0.332232146526113
Merged-chr13-9161297-2	chr13	9161197	9161397	+	595.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172585, intron 13 of 17)	intron (NM_172585, intron 13 of 17)	67416.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-142373876-3	chr7	142373779	142373979	+	947.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347541)	promoter-TSS (NM_001347541)	-133.0	NM_001347541	320802.0	Mm.154486	NM_177265	ENSMUSG00000045777	Ifitm10	6330512M04Rik|AI848576|DSPA3	interferon induced transmembrane protein 10	protein-coding	0.550173138878627	1.34084472975714	0.608595557826519	0.749907984056125	0.379439759675756	1.35589202439212	0.401628580169063	0.392584641706004	-0.601148705077456	0.722590954752756	0.998431161219273
Merged-chr14-103009253-2	chr14	103009153	103009353	+	617.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045657, intron 2 of 2)	intron (NR_045657, intron 2 of 2)	24550.0	NR_045657	71264.0	Mm.399572	NR_045657	ENSMUSG00000114980	4933432I03Rik	-	RIKEN cDNA 4933432I03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80803378-4	chr7	80803252	80803452	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016721)	promoter-TSS (NM_016721)	-21.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-59600416-4	chr16	59600306	59600506	+	991.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36539.0	NR_040564	75145.0	Mm.399348	NR_040564		4930547E14Rik	-	RIKEN cDNA 4930547E14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72119368-2	chr6	72119268	72119468	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_045163)	TTS (NR_045163)	3572.0	NR_045163	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120584249-2	chr11	120584175	120584375	+	719.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-2655.0	NM_133796	192662.0	Mm.30016	NM_133796	ENSMUSG00000025132	Arhgdia	5330430M07Rik|Gdi-1|Rho-GDI|RhoDGI|RhoGDI-1	Rho GDP dissociation inhibitor (GDI) alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-51738796-4	chr15	51738690	51738890	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	126671.0	NM_080635	68135.0	Mm.289800	NM_080635	ENSMUSG00000022312	Eif3h	1110008A16Rik|40kD|9430017H16Rik|EIF3-P40|EIF3-gamma|Eif3s3	eukaryotic translation initiation factor 3, subunit H	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-10976816-1	chr4	10976716	10976916	+	553.0	f0_balb.idr	Intergenic	MTC|LTR|ERVL-MaLR	30803.0	NM_175175	71801.0	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	-1.56355737717652	-1.81244775989375	-1.82128546162293	-1.82854501295842	-1.83962066705452	-1.81053259306168	-1.81928479966835	-1.82724555674025	-1.28500227969968	0.715751224811686	1
Merged-chr5-117938435-4	chr5	117938366	117938566	+	997.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008712, intron 21 of 27)	intron (NM_008712, intron 21 of 27)	-38304.0	NM_145564	231670.0	Mm.21912	NM_145564	ENSMUSG00000032898	Fbxo21	2810425J22Rik|AU016673	F-box protein 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140382854-4	chr5	140382746	140382946	+	914.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172277, intron 1 of 10)	intron (NM_172277, intron 1 of 10)	6462.0	NM_172277	231834.0	Mm.27098	NM_172277	ENSMUSG00000029560	Snx8	B130023O14Rik	sorting nexin 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-36914282-2	chr17	36914185	36914385	+	598.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	-9507.0	NR_045439	73286.0	Mm.426884	NR_045439	ENSMUSG00000092239	1700031A10Rik	-	RIKEN cDNA 1700031A10 gene	ncRNA	2.4195334229646	2.26663374300258	1.40752228407813	1.37227992710632	1.91443376462186	2.75304564416578	1.41737974269943	1.57647037891789	0.176053202915873	0.865840004944627	0.998431161219273
Merged-chr4-53394644-1	chr4	53394544	53394744	+	570.0	f1_balb.idr	Intergenic	Intergenic	-45769.0	NM_001159633	100434.0	Mm.482207	NM_133891	ENSMUSG00000028412	Slc44a1	2210409B22Rik|4833416H08Rik|AW547365|CHTL1|CTL1|Cdw92	solute carrier family 44, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-120519635-4	chr1	120519533	120519733	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14609.0	NM_010766	17167.0	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	3.2317675206461	3.70870678417192	3.93146785501875	3.56395007877138	2.87966834308252	3.56106279923379	3.69195547490758	4.01245914110268	-0.0491344205165705	0.92719633139782	0.998431161219273
Merged-chr19-47399177-4	chr19	47399076	47399276	+	957.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008018, intron 2 of 14)	intron (NM_008018, intron 2 of 14)	65235.0	NM_001164717	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-120306414-4	chr14	120306325	120306525	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360376)	promoter-TSS (NM_001360376)	-27.0	NM_001360376	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-33684700-4	chr1	33684595	33684795	+	678.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14871.0	NR_033199	67503.0	Mm.87069	NM_026204	ENSMUSG00000103746	1700001G17Rik	-	RIKEN cDNA 1700001G17 gene	ncRNA	0.593104908357818	0.912717536402705	0.559419871792258	0.260867910492469	0.255517037168983	0.27081738165068	0.686560337080463	0.261533413466123	-1.69955524434556	0.388174087559676	1
Merged-chr13-58126362-4	chr13	58126247	58126447	+	835.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_029872, exon 1 of 1)	3' UTR (NM_029872, exon 1 of 1)	2209.0	NM_029872	77134.0	Mm.490274	NM_029872	ENSMUSG00000007836	Hnrnpa0	1110055B05Rik|3010025E17Rik|Hnrpa0|hnRNP A0	heterogeneous nuclear ribonucleoprotein A0	protein-coding	3.3320966941976	3.09458712695593	2.5870049995389	3.95147695378907	3.59752285245033	3.11767557019457	2.60826591246044	3.52324679515163	-0.109733562089095	0.861629342772471	0.998431161219273
Merged-chr11-74983477-2	chr11	74983377	74983577	+	756.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001002764, intron 9 of 18)	intron (NM_001002764, intron 9 of 18)	57605.0	NM_001002764	103677.0	Mm.288460	NM_001002764	ENSMUSG00000038290	Smg6	AI317223|AU041178	Smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-75005754-4	chr18	75005634	75005834	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001001181)	promoter-TSS (NM_001001181)	-105.0	NM_001358306	407819.0	Mm.29866	NM_001001181	ENSMUSG00000036299	BC031181	-	cDNA sequence BC031181	protein-coding	7.18711567970853	7.26416252966388	7.73568354689557	7.35175389356659	7.38998636974427	7.05567846954899	7.41553266705067	7.55751534567359	-0.0307684150576243	0.857657666481593	0.998431161219273
Merged-chr11-75165525-4	chr11	75165419	75165619	+	992.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001098203, exon 2 of 2)	exon (NM_001098203, exon 2 of 2)	2633.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-82970516-2	chr9	82970416	82970616	+	562.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081216, intron 4 of 39)	MTD|LTR|ERVL-MaLR	4973.0	NM_001081216	83946.0	Mm.221688	NM_031879	ENSMUSG00000032253	Phip	2810004D21Rik|4632404O06Rik|Ndrp|Wdr11	pleckstrin homology domain interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-79628887-4	chr3	79628806	79629006	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029482)	promoter-TSS (NM_029482)	-139.0	NM_025794	66841.0	Mm.28336	NM_025794	ENSMUSG00000027809	Etfdh	0610010I20Rik|AV001013	electron transferring flavoprotein, dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-99229621-3	chr5	99229514	99229714	+	747.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181318, intron 8 of 13)	MER58B|DNA|hAT-Charlie	23313.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-37973157-2	chr18	37973057	37973257	+	851.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001205336, exon 33 of 33)	3' UTR (NM_001205336, exon 33 of 33)	1460.0	NR_105947	102466779.0		NR_105947	ENSMUSG00000098608	Mir6981	Gm27609|mmu-mir-6981	microRNA 6981	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-83396399-3	chr7	83396311	83396511	+	750.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-188520.0	NM_177695	233424.0	Mm.486619	NM_177695	ENSMUSG00000038540	Tmc3	9030203A06	transmembrane channel-like gene family 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-58885823-2	chr15	58885723	58885923	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3406.0	NM_175226	75841.0	Mm.4537	NM_175226	ENSMUSG00000037075	Rnf139	4930555P18Rik	ring finger protein 139	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34364839-4	chr17	34364749	34364949	+	960.216675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_079835, intron 6 of 8)	intron (NM_079835, intron 6 of 8)	10027.0	NM_079835	547431.0	Mm.441007	NM_079835	ENSMUSG00000024340	Btnl2	BTL-II|BTLN2|Btl2|Gm315|NG9	butyrophilin-like 2	protein-coding	4.45386669158972	5.65941318313392	4.01528056435084	4.23033773476921	5.15898566182708	4.84789671232794	4.74603697704466	4.6556019179878	0.144899098269545	0.72909020546289	0.998431161219273
Merged-chr16-44009398-3	chr16	44009336	44009536	+	833.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001172107, exon 3 of 13)	exon (NM_001172107, exon 3 of 13)	-4416.0	NR_037302	100499519.0		NR_037302	ENSMUSG00000093912	Mir3470b	mmu-mir-3470b	microRNA 3470b	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-17675194-2	chr18	17675094	17675294	+	647.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17D2|LTR|ERVK	-94204.0	NR_045374	75162.0	Mm.60874	NR_045374		4930545E07Rik	-	RIKEN cDNA 4930545E07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94515040-5	chr10	94514954	94515154	+	941.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172051, exon 1 of 4)	exon (NM_172051, exon 1 of 4)	197.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-97585565-2	chr3	97585492	97585692	+	761.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_026539, intron 12 of 22)	intron (NM_026539, intron 12 of 22)	24598.0	NM_026539	68058.0	Mm.31761	NM_026539	ENSMUSG00000028089	Chd1l	4432404A22Rik|Alc1|Snf2p	chromodomain helicase DNA binding protein 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-162739487-4	chr1	162739387	162739587	+	929.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081290, intron 1 of 34)	intron (NM_001081290, intron 1 of 34)	1069.0	NM_001081290	226562.0	Mm.245446	NM_001081290	ENSMUSG00000040225	Prrc2c	1810043M20Rik|9630039I18Rik|A630006J20|Bat2d|Bat2d1|Bat2l2|E130112L15Rik|Prrc3|mKIAA1096	proline-rich coiled-coil 2C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-21998909-6	chr10	21998820	21999020	+	798.972229	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001161850, exon 12 of 12)	3' UTR (NM_001161850, exon 12 of 12)	4254.0	NM_011361	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-55255869-4	chr9	55255758	55255958	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_032002, intron 3 of 7)	LTR37-int|LTR|ERV1	27767.0	NM_032002	83961.0	Mm.443874	NM_032002	ENSMUSG00000032311	Nrg4	AI552600	neuregulin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-11385659-2	chr4	11385559	11385759	+	608.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001290383, exon 2 of 16)	exon (NM_001290383, exon 2 of 16)	1119.0	NM_001347052	207920.0	Mm.387719	NM_194055	ENSMUSG00000040728	Esrp1	2210008M09Rik|A630065D16|BC031468|Rbm35a	epithelial splicing regulatory protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-47377145-4	chr14	47377019	47377219	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145953, intron 1 of 5)	MIRc|SINE|MIR	3259.0	NM_001145953	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	5.45170355186491	5.49803352813455	5.53778561435938	5.84898926662604	4.7468347615934	4.17548728078149	4.72148398940601	5.37711075996822	-0.888135103647835	0.00593030355490887	0.0760841640974668
Merged-chr17-66096920-4	chr17	66096834	66097034	+	891.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028388, intron 1 of 7)	intron (NM_028388, intron 1 of 7)	4625.0	NM_001278415	72900.0	Mm.2206	NM_028388	ENSMUSG00000024099	Ndufv2	2900010C23Rik	NADH dehydrogenase (ubiquinone) flavoprotein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-16314488-2	chr8	16314388	16314588	+	654.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_053171, intron 10 of 69)	intron (NM_053171, intron 10 of 69)	-145650.0	NR_037214	100526464.0		NR_037214	ENSMUSG00000093142	Mir3106	mir-3106|mmu-mir-3106	microRNA 3106	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-82863873-4	chr8	82863763	82863963	+	998.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_177378, exon 1 of 7)	5' UTR (NM_177378, exon 1 of 7)	507.0	NM_177378	330812.0	Mm.491438	NM_177378	ENSMUSG00000047747	Rnf150	A630007N06Rik|C030044C12Rik|Greul5|mKIAA1214	ring finger protein 150	protein-coding	-0.370449716402377	-0.145061306406013	-0.359989460947452	-0.363908690797303	0.612481066623029	-0.353795795489343	-0.358871890527696	-0.181616936008121	2.94852300398891	0.223119248333235	1
Merged-chr2-78613940-2	chr2	78613840	78614040	+	628.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVB7_4-LTR_MM|LTR|ERVK	-255107.0	NM_009454	22193.0	Mm.1485	NM_009454	ENSMUSG00000027011	Ube2e3	Ubce4|ubcM2	ubiquitin-conjugating enzyme E2E 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4560765-4	chr16	4560658	4560858	+	960.2708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1038.0	NM_031182	83383.0	Mm.273210	NM_031182	ENSMUSG00000005718	Tfap4	AI642933|AP-4|D930048N17Rik|Tcfap4|bHLHc41	transcription factor AP4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-153897848-2	chr1	153897748	153897948	+	672.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2078.0	NR_106194	102466257.0		NR_106194	ENSMUSG00000099227	Mir8114	Gm27382|mmu-mir-8114	microRNA 8114	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-73114937-2	chr5	73114837	73115037	+	730.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028194, intron 13 of 62)	intron (NM_028194, intron 13 of 62)	108033.0	NM_173403	231290.0	Mm.491387	NM_173403	ENSMUSG00000029219	Slc10a4	E130304D01	solute carrier family 10 (sodium/bile acid cotransporter family), member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-58977468-3	chr11	58977364	58977564	+	827.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290988)	promoter-TSS (NM_001290988)	-629.0	NM_001290988	94091.0	Mm.248049	NM_053168	ENSMUSG00000020455	Trim11	-	tripartite motif-containing 11	protein-coding	-0.427941356304713	-0.552758147894974	-0.12362774206687	-0.558544508196923	-0.106288101730282	-0.552018321115566	-0.555310174875004	-0.558106013932241	-0.231951528914283	0.930830797367276	1
Merged-chr18-5840130-3	chr18	5840024	5840224	+	790.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	247477.0	NM_001360981	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167113000-2	chr2	167112900	167113100	+	911.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008420, intron 1 of 1)	intron (NM_008420, intron 1 of 1)	47707.0	NR_028540	100217443.0		NR_028540		Snord12	MBII-99	small nucleolar RNA, C/D box 12	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-66120190-4	chr2	66120095	66120295	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015736, intron 1 of 10)	intron (NM_015736, intron 1 of 10)	4598.0	NM_015736	14425.0	Mm.439760	NM_015736	ENSMUSG00000026994	Galnt3	-	polypeptide N-acetylgalactosaminyltransferase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-102718513-1	chr9	102718413	102718613	+	688.0	f1_balb.idr	intron (NM_019764, intron 1 of 9)	CpG	709.0	NM_019764	56332.0	Mm.21145	NM_019764	ENSMUSG00000032531	Amotl2	AW549739|C79691|Lccp|MASCOT|mKIAA0989	angiomotin-like 2	protein-coding	-0.563464114239409	-0.709580046279266	-0.713637694667566	-0.71678191368061	0.205730067123505	-0.708668124414606	-0.712741044269199	-0.716231763839416	2.63232301592234	0.351078201194144	1
Merged-chr4-43728743-3	chr4	43728662	43728862	+	858.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_027511)	TTS (NM_027511)	-1272.0	NM_001348108	71406.0	Mm.33063	NM_027789	ENSMUSG00000028475	Spaar	5430416O09Rik|AI481365|Spar	small regulatory polypeptide of amino acid response	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-61716968-2	chr11	61716868	61717068	+	666.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033227, intron 2 of 15)	intron (NM_001033227, intron 2 of 15)	3831.0	NM_001033227	109342.0	Mm.441070	NM_001033227	ENSMUSG00000042371	Slc5a10	C330021F16Rik|SGLT5	solute carrier family 5 (sodium/glucose cotransporter), member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-109344551-2	chr11	109344451	109344651	+	784.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2316.0	NR_027883	67927.0	Mm.394490	NR_027883	ENSMUSG00000099630	1700096J18Rik	-	RIKEN cDNA 1700096J18 gene	ncRNA	-0.208283783115327	-0.190719793063729	-0.196438776803222	0.56960718211407	-0.207177803637276	-0.189435193761239	-0.195174548196752	0.578527616610749	0.0282038014051437	0.990994131209618	1
Merged-chr19-36926857-3	chr19	36926770	36926970	+	877.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080706, intron 1 of 37)	intron (NM_001080706, intron 1 of 37)	791.0	NM_001080706	107182.0	Mm.295062	NM_001080706	ENSMUSG00000040565	Btaf1	AI414500|AI447930|E430027O22Rik|TAF170	B-TFIID TATA-box binding protein associated factor 1	protein-coding	2.40884520441564	2.46859882845522	1.86930003122386	3.37152288391654	2.19800186761118	1.41012828234595	2.08182729636467	3.58472760083988	-0.091853537028335	0.920264604989503	0.998431161219273
Merged-chr10-78476972-4	chr10	78476890	78477090	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12042.0	NM_172134	216134.0	Mm.206159	NM_172134	ENSMUSG00000032788	Pdxk	2310036D04Rik|AA119688|C77999	pyridoxal (pyridoxine, vitamin B6) kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81107053-1	chr15	81106953	81107153	+	1000.0	f1_balb.idr	intron (NM_001082536, intron 2 of 13)	MT2B1|LTR|ERVL	-2006.0	NM_153049	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	-1.33793447301127	-1.30826030895896	-1.31828845321677	-1.32652586948969	-0.950077789383471	-1.30608716826488	-1.15822981092724	-1.32505137591525	2.29714043412452	0.496446034091415	1
Merged-chr11-8711016-2	chr11	8710916	8711116	+	558.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46481.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-26974159-4	chr2	26974060	26974260	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001322, intron 2 of 28)	intron (NM_001001322, intron 2 of 28)	744.0	NM_001290465	279028.0	Mm.330084	NM_001001322	ENSMUSG00000014852	Adamts13	ADAM-TS13|ADAMTS-13|Gm710|vWF-CP	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-118354320-4	chr5	118354222	118354422	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	109095.0	NM_001081236	76792.0	Mm.103428	NM_001081236	ENSMUSG00000032840	2410131K14Rik	-	RIKEN cDNA 2410131K14 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180401975-4	chr1	180401872	180402072	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081175, intron 2 of 7)	intron (NM_001081175, intron 2 of 7)	-71423.0	NR_003623	277333.0	Mm.389223	NM_199472		Gm5069	EG277333	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-88855822-2	chr6	88855722	88855922	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347327, intron 2 of 7)	intron (NM_001347327, intron 2 of 7)	12968.0	NR_045880	100038356.0	Mm.442704	NR_045880	ENSMUSG00000085828	Gm15612	-	predicted gene 15612	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-113340806-1	chr13	113340706	113340906	+	573.0	f0_balb.idr	Intergenic	Intergenic	131147.0	NM_023612	71690.0	Mm.38929	NM_023612	ENSMUSG00000042379	Esm1	0610042H23Rik|AV004503|ESM-1	endothelial cell-specific molecule 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167335299-4	chr2	167335207	167335407	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019835, intron 1 of 8)	intron (NM_019835, intron 1 of 8)	13871.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-133012504-1	chr1	133012404	133012604	+	925.5	f0_balb.idr	intron (NM_008575, intron 4 of 11)	intron (NM_008575, intron 4 of 11)	12912.0	NR_126506	17248.0	Mm.426531	NM_008575	ENSMUSG00000054387	Mdm4	4933417N07Rik|AA414968|AL023055|AU018793|AU021806|C85810|Mdmx	transformed mouse 3T3 cell double minute 4	protein-coding	0.0329926040589267	-0.10462919130018	0.699650916852612	-0.115218412916955	-0.121789488398935	0.560844110046552	-0.109275312516742	-0.114409001103281	-0.574824510960573	0.801096717218183	1
Merged-chr7-80027798-2	chr7	80027698	80027898	+	893.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175433, intron 1 of 4)	intron (NM_175433, intron 1 of 4)	1570.0	NM_175433	209225.0	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-122892351-4	chr4	122892220	122892420	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6244.0	NM_001358036	12331.0	Mm.8687	NM_007598	ENSMUSG00000028656	Cap1	-	CAP, adenylate cyclase-associated protein 1 (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-172331775-4	chr1	172331669	172331869	+	924.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2447.0	NM_001360808	16524.0	Mm.261168	NM_008429	ENSMUSG00000038026	Kcnj9	1700085N21Rik|Girk3|Kir3.3|mbGIRK3	potassium inwardly-rectifying channel, subfamily J, member 9	protein-coding	1.46911329295809	1.35690427060855	2.62781652410078	2.55096931522947	2.52371732640225	1.6511152362026	2.83023514669472	3.02732964546512	0.978229603167854	0.305198879819275	0.806677080350639
Merged-chr19-41088481-4	chr19	41088389	41088589	+	948.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011904, intron 19 of 20)	intron (NM_011904, intron 19 of 20)	-11376.0	NM_153520	226115.0	Mm.54119	NM_153520	ENSMUSG00000050121	Opalin	Tmem10|Tmp10	oligodendrocytic myelin paranodal and inner loop protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-59024791-4	chr19	59024692	59024892	+	695.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114312, intron 8 of 16)	ID_B1|SINE|B4	51277.0	NM_175172	71653.0	Mm.37338	NM_175172	ENSMUSG00000041362	Shtn1	4930506M07Rik|Shootin1|mKIAA1598	shootin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115824040-4	chr11	115823963	115824163	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145438)	promoter-TSS (NM_145438)	5.0	NM_001252532	217325.0	Mm.290450	NM_145438	ENSMUSG00000020782	Llgl2	9130006H11Rik|Llglh2	LLGL2 scribble cell polarity complex component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-63021948-2	chr9	63021848	63022048	+	606.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41069.0	NM_019663	56469.0	Mm.431253	NM_019663	ENSMUSG00000032405	Pias1	2900068C24Rik|Ddxbp1|GBP	protein inhibitor of activated STAT 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-32359308-7	chr18	32359191	32359391	+	998.4285890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045403, exon 3 of 3)	non-coding (NR_045403, exon 3 of 3)	-17926.0	NM_001083334	30948.0	Mm.4383	NM_009668	ENSMUSG00000024381	Bin1	ALP-1|Amphl|BRAMP-2|SH3P9	bridging integrator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-74471967-4	chr5	74471865	74472065	+	992.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114660, intron 3 of 8)	intron (NM_001114660, intron 3 of 8)	59777.0	NM_178672	212986.0	Mm.134147	NM_178672	ENSMUSG00000062110	Scfd2	E430013M20Rik|STXBP1L1	Sec1 family domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-116595367-1	chr3	116595267	116595467	+	1000.0	f1_balb.idr	promoter-TSS (NR_152258)	promoter-TSS (NR_152258)	409.0	NM_001289571	72776.0	Mm.440836	NM_028349	ENSMUSG00000027959	Sass6	2810453L12Rik	SAS-6 centriolar assembly protein	protein-coding	3.49866071126611	4.2298542013193	5.01093488467018	2.51315404508807	4.35547450940409	3.79818563560729	4.76570076250373	4.42634991838892	0.357331905552937	0.515430377003794	0.947402641287243
Merged-chr11-69095113-4	chr11	69094989	69095189	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3860.0	NM_011065	18626.0	Mm.7373	NM_011065	ENSMUSG00000020893	Per1	Hftm|Per|m-rigui|mPer1	period circadian clock 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-26748331-4	chr19	26748224	26748424	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026003)	promoter-TSS (NM_026003)	-79.0	NM_026003	67155.0	Mm.491146	NM_011416	ENSMUSG00000024921	Smarca2	2610209L14Rik|SNF2alpha|Snf2l2|brahma|brm	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding	5.60277913315779	6.01689584058884	5.29469321130695	5.43025862454678	5.55918791067731	5.8892855343833	5.22829129867939	5.39896216955634	-0.0816692800382227	0.772277596289688	0.998431161219273
Merged-chr3-60496501-2	chr3	60496401	60496601	+	584.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253713, intron 2 of 9)	intron (NM_001253713, intron 2 of 9)	-4678.0	NM_001253710	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-18800555-2	chr2	18800455	18800655	+	656.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_131254, exon 1 of 1)	non-coding (NR_131254, exon 1 of 1)	1263.0	NR_131254	66774.0	Mm.87075	NR_131254	ENSMUSG00000097638	Carlr	4933439G12Rik|Carl	cardiac and apoptosis-related long non-coding RNA	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-102521100-1	chr4	102521000	102521200	+	678.0	f1_c57bl6.idr	intron (NM_019840, intron 5 of 14)	intron (NM_019840, intron 5 of 14)	-48960.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	0.568404664943621	1.05074657658281	0.88995908372194	0.302379272627431	0.575444086161044	0.518734135112069	0.309541908480154	0.30335400545968	-2.00745130511056	0.267309626648033	1
Merged-chr7-101384664-4	chr7	101384560	101384760	+	987.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027180)	promoter-TSS (NM_027180)	-866.0	NM_027180	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-67399772-4	chr13	67399668	67399868	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080941)	promoter-TSS (NM_001080941)	-1.0	NM_001080941	72807.0	Mm.303790	NM_001080941	ENSMUSG00000078994	Zfp429	2810487A22Rik|AI929863|Rsl2	zinc finger protein 429	protein-coding	5.48943282312259	6.64423245726729	6.18092913523378	5.32783067082108	5.28976759367375	5.36126654592034	5.69124202787264	5.29141169310768	-0.658258674638591	0.0358150431826015	0.268121186421497
Merged-chr4-3781297-4	chr4	3781402	3781602	+	818.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 11 of 12)	intron (NM_001111096, intron 11 of 12)	54153.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	-1.31349849087795	-1.28274354783242	-1.29349452597086	-1.3023256995151	-1.3130151546297	-1.28041376602105	-0.694015972326031	-1.30074492367298	2.57396649482007	0.456321314346772	1
Merged-chr5-21722361-2	chr5	21722261	21722461	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-14799.0	NM_028431	73078.0	Mm.301655	NM_028431	ENSMUSG00000029017	Pmpcb	3110004O18Rik|MPP11|MPPB|MPPP52	peptidase (mitochondrial processing) beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-40435569-4	chr10	40435462	40435662	+	989.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198164, intron 3 of 11)	intron (NM_198164, intron 3 of 11)	86254.0	NM_001291816	78334.0	Mm.200924	NM_198164	ENSMUSG00000038481	Cdk19	2700084L06Rik|AI845279|AW228747|CDK11|Cdc2l6|mKIAA1028	cyclin-dependent kinase 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-121580627-4	chr8	121580538	121580738	+	972.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1832.0	NM_133765	76454.0	Mm.24829	NM_133765	ENSMUSG00000052934	Fbxo31	1110003O08Rik|2310046N15Rik|Fbx14|Fbxo14	F-box protein 31	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-41978591-3	chr10	41978492	41978692	+	631.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034858, intron 6 of 17)	intron (NM_001034858, intron 6 of 17)	39790.0	NM_001034858	213402.0	Mm.211320	NM_001034858	ENSMUSG00000071324	Armc2	2610018I05Rik	armadillo repeat containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-55835179-2	chr12	55835079	55835279	+	695.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A2|LTR|ERVL-MaLR	-1187.0	NM_001037756	52592.0	Mm.24761	NM_027867	ENSMUSG00000012076	Brms1l	0710008O11Rik|AI159718|BRMS1|D12Ertd407e	breast cancer metastasis-suppressor 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-69081631-4	chr8	69081535	69081735	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153054, intron 1 of 16)	intron (NM_153054, intron 1 of 16)	-7101.0	NM_007509	11966.0	Mm.249096	NM_007509	ENSMUSG00000006273	Atp6v1b2	AI194269|AI790362|Atp6b2|HO57|R74844	ATPase, H+ transporting, lysosomal V1 subunit B2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-94863812-2	chr17	94863712	94863912	+	578.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1106.0	NM_001024731	100044193.0		NM_001024731	ENSMUSG00000095193	Gm20939	-	predicted gene, 20939	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-84361154-4	chr17	84361054	84361254	+	982.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183021, intron 26 of 37)	intron (NM_183021, intron 26 of 37)	105054.0	NM_183021	240174.0	Mm.246767	NM_177826	ENSMUSG00000024251	Thada	6530405K19|A930021O22|AU019899|BC052885|GITA	thyroid adenoma associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-63253365-4	chr13	63253255	63253455	+	974.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289926, intron 13 of 15)	intron (NM_001289926, intron 13 of 15)	13326.0	NR_110521	72061.0	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-31563987-3	chr6	31563886	31564086	+	819.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013723)	promoter-TSS (NM_013723)	-49.0	NM_013723	27205.0	Mm.89918	NM_013723	ENSMUSG00000025608	Podxl	AW121214|Ly102|PC|PCLP-1|Pclp1|Podxl1	podocalyxin-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46522073-4	chr19	46521971	46522171	+	949.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	20423.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-123443076-4	chr8	123442961	123443161	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001281803)	promoter-TSS (NM_001281803)	105.0	NM_054046	23854.0	Mm.275127	NM_054046	ENSMUSG00000001482	Def8	AI449518|D8Ertd713e|DEF-8	differentially expressed in FDCP 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-158189610-4	chr2	158189535	158189735	+	880.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001131021, intron 14 of 15)	ORR1D2|LTR|ERVL-MaLR	-2373.0	NR_036606	73399.0	Mm.416861	NR_036606	ENSMUSG00000078957	1700060C20Rik	-	RIKEN cDNA 1700060C20 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-90476085-4	chr7	90475989	90476189	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026734)	promoter-TSS (NM_026734)	-94.0	NM_026734	68472.0	Mm.289791	NM_026734	ENSMUSG00000030614	Tmem126b	1110001A23Rik	transmembrane protein 126B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-3412051-2	chr7	3411951	3412151	+	951.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133190, intron 2 of 3)	CpG	-3015.0	NR_128566	104795667.0		NR_128566	ENSMUSG00000094210	Gm23450	Mir935|mmu-mir-935	predicted gene, 23450	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-145725349-2	chr2	145725249	145725449	+	569.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_033220, intron 2 of 3)	B2_Mm1t|SINE|B2	24154.0	NR_033220	408057.0	Mm.486711	NR_033220	ENSMUSG00000087594	BC039771	-	cDNA sequence BC039771	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56071891-1	chr17	56071791	56071991	+	542.0	f1_balb.idr	intron (NM_024432, intron 5 of 11)	ORR1C2|LTR|ERVL-MaLR	7442.0	NM_024432	66530.0	Mm.28000	NM_024432	ENSMUSG00000019578	Ubxn6	1200008L11Rik|2210415J11Rik|AU040909|Ubxd1|Ubxdc2	UBX domain protein 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-23646846-2	chr18	23646746	23646946	+	769.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361215, intron 16 of 19)	intron (NM_001361215, intron 16 of 19)	105459.0	NR_126066	100502834.0	Mm.213614	NR_126066	ENSMUSG00000086287	Gm15972	-	predicted gene 15972	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-12546679-3	chr4	12546587	12546787	+	936.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F-int|LTR|ERVL-MaLR	-360150.0	NM_173746	208820.0	Mm.12057	NM_173746	ENSMUSG00000055963	Triqk	C130086A10|Gm11818	triple QxxK/R motif containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-90840255-4	chr8	90840143	90840343	+	988.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177224, intron 1 of 39)	MamRep605|LTR?|LTR?	11408.0	NM_177224	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	5.1791074347596	3.22960840800409	4.59161632445197	3.249622352201	4.9572923765562	3.72479944672739	4.38024199038467	4.02023979268023	0.0237246312669452	0.964993363511529	0.998431161219273
Merged-chr16-75535853-1	chr16	75535753	75535953	+	546.0	f1_c57bl6.idr	Intergenic	RLTR11A|LTR|ERVK	50208.0	NM_001252513	320355.0	Mm.99517	NM_177142	ENSMUSG00000032948	Lipi	D930038D03Rik|lpd1	lipase, member I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-39851754-2	chr1	39851654	39851854	+	568.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	tRNA-Ala-GCY_|tRNA|tRNA	-4424.0	NR_040465	73426.0	Mm.396239	NR_040465	ENSMUSG00000101634	1700066B17Rik	-	RIKEN cDNA 1700066B17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-39242324-2	chr6	39242224	39242424	+	543.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35551.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76343499-4	chr15	76343365	76343565	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025567)	promoter-TSS (NM_025567)	-58.0	NM_025567	66445.0	Mm.29196	NM_025567	ENSMUSG00000022551	Cyc1	2610002H19Rik|AA408921|Cyct1	cytochrome c-1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-145122694-4	chr7	145122626	145122826	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	85393.0	NR_033626	100040049.0	Mm.102235	NR_033626	ENSMUSG00000109305	1810010D01Rik	Gm2572	RIKEN cDNA 1810010D01 gene	ncRNA	3.25428370447638	2.41036401237486	3.7873737500064	3.68045999069788	4.43740049517636	4.08840926219628	4.89408725243934	3.16372744733732	1.25767952157832	0.0254680623037748	0.212294003754535
Merged-chr15-81219328-2	chr15	81219217	81219417	+	740.291626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16182.0	NM_145132	207911.0	Mm.323523	NM_145132	ENSMUSG00000050164	Mchr1	AW049955|Gpr24|Mch1r	melanin-concentrating hormone receptor 1	protein-coding	2.7066788644659	2.95508181498283	1.65822317370547	2.99260827544845	2.5745041519079	2.13933131912414	1.66999355915869	2.15677768824052	-1.06626467683768	0.216191262209379	0.706831651272553
Merged-chr13-31225667-3	chr13	31225564	31225764	+	946.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045957, intron 1 of 2)	L1MA5A|LINE|L1	15422.0	NR_045957	73924.0	Mm.417825	NR_045957	ENSMUSG00000087460	4930401O12Rik	-	RIKEN cDNA 4930401O12 gene	ncRNA	2.32554710336319	3.84687100010366	2.0162805269821	1.9526166776727	2.79109301347464	3.75931696201389	3.21876502579425	2.32990316474193	0.540826520779716	0.497262131417464	0.936897994490085
Merged-chr1-151598043-4	chr1	151597933	151598133	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022018, intron 1 of 13)	L3|LINE|CR1	26660.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-104939899-2	chr12	104939799	104939999	+	996.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001042699, intron 17 of 18)	intron (NM_001042699, intron 17 of 18)	58778.0	NM_001042699	212073.0	Mm.212688	NM_172500	ENSMUSG00000054150	Syne3	KASH3|nesprin-3	spectrin repeat containing, nuclear envelope family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-46066889-3	chr9	46066790	46066990	+	841.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027498, intron 1 of 24)	intron (NM_027498, intron 1 of 24)	54070.0	NM_027498	70661.0	Mm.219459	NM_027498	ENSMUSG00000034135	Sik3	5730525O22Rik|9030204A07Rik|AI447252|AI846254|AI849445|Qsk|SIK-3|mKIAA0999	SIK family kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-93805125-2	chr16	93805025	93805225	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357118, intron 31 of 35)	PB1D10|SINE|Alu	-10224.0	NR_151466	102633000.0	Mm.443436	NR_151466		2310043M15Rik	-	RIKEN cDNA 2310043M15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97740374-4	chr11	97740301	97740501	+	892.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054051, intron 1 of 9)	intron (NM_054051, intron 1 of 9)	4303.0	NM_054051	108083.0	Mm.39700	NM_054051	ENSMUSG00000018547	Pip4k2b	AI848124|PI5P4Kbeta|Pip5k2b|c11	phosphatidylinositol-5-phosphate 4-kinase, type II, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-61386025-4	chr9	61385962	61386162	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083928, intron 4 of 19)	intron (NM_001083928, intron 4 of 19)	13696.0	NM_001083927	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71616787-4	chr17	71616670	71616870	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175639, intron 1 of 17)	CpG	555.0	NM_175639	72515.0	Mm.257762	NM_175639	ENSMUSG00000041057	Wdr43	2610318G08Rik|AU020887|AV024208|Wrd43|mKIAA0007	WD repeat domain 43	protein-coding	1.76609390756576	2.82677713334847	1.73873032645496	2.26943734582504	1.42185080398598	2.93017292120067	2.5714958207848	1.48908206827036	0.103418202697688	0.9151892016253	0.998431161219273
Merged-chr17-35753563-1	chr17	35753463	35753663	+	719.0	f1_balb.idr	Intergenic	B3|SINE|B2	-18887.0	NR_045459	74601.0	Mm.410840	NR_045459	ENSMUSG00000092171	4833427F10Rik	-	RIKEN cDNA 4833427F10 gene	ncRNA	2.34608887336965	1.99950742295253	2.86708817273714	2.95157509721373	1.79271380156544	3.45278851180113	2.79367932097652	1.88553553346732	0.141230897296058	0.866602712097765	0.998431161219273
Merged-chr11-3287939-2	chr11	3287839	3288039	+	822.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_037301, intron 1 of 1)	intron (NR_037301, intron 1 of 1)	-1192.0	NR_045108	56218.0	Mm.275563	NM_019574	ENSMUSG00000020453	Patz1	8430401L15Rik|AI447519|Mazr|Patz|Zfp278	POZ (BTB) and AT hook containing zinc finger 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-101559668-4	chr14	101559639	101559839	+	877.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081278, intron 1 of 18)	Lx6|LINE|L1	49452.0	NM_001081278	210789.0	Mm.320639	NM_173380	ENSMUSG00000033083	Tbc1d4	5930406J04Rik|A930035N22|AV295684|As160	TBC1 domain family, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21297315-4	chr9	21297223	21297423	+	898.6749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110300, intron 9 of 10)	intron (NM_001110300, intron 9 of 10)	-6114.0	NM_009878	12581.0	Mm.29020	NM_009878	ENSMUSG00000096472	Cdkn2d	INK4d|p19|p19INK4d	cyclin dependent kinase inhibitor 2D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-8164946-4	chr5	8164845	8165045	+	798.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001007220, intron 5 of 28)	intron (NM_001007220, intron 5 of 28)	108403.0	NM_001080974	109552.0	Mm.96211	NM_025618	ENSMUSG00000003161	Sri	2210417O06Rik|2900070H08Rik|Sor	sorcin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-131698328-4	chr3	131698238	131698438	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	132306.0	NM_001289477	23971.0	Mm.244912	NM_011863	ENSMUSG00000028032	Papss1	AI325286|Asapk|SK1	3'-phosphoadenosine 5'-phosphosulfate synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-16160195-3	chr4	16160101	16160301	+	922.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_138102, intron 1 of 11)	intron (NR_138102, intron 1 of 11)	3442.0	NM_138952	192656.0	Mm.112765	NM_138952	ENSMUSG00000041135	Ripk2	2210420D18Rik|CARD3|CARDIAK|CCK|D4Bwg0615e|RICK|RIP2	receptor (TNFRSF)-interacting serine-threonine kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-133758667-4	chr3	133758560	133758760	+	907.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-214270.0	NM_001346736	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-121682625-2	chr3	121682525	121682725	+	838.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033814, intron 5 of 5)	intron (NM_001033814, intron 5 of 5)	11862.0	NM_001033814	619318.0	Mm.371258	NM_001033814	ENSMUSG00000074248	4930432M17Rik	-	RIKEN cDNA 4930432M17 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117986825-4	chr11	117986724	117986924	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133757)	promoter-TSS (NM_133757)	-33.0	NM_133757	74451.0	Mm.28864	NM_133757	ENSMUSG00000017715	Pgs1	2610019F11Rik|4933424M23Rik|SAF	phosphatidylglycerophosphate synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-47013958-2	chr7	47013858	47014058	+	850.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-5544.0	NM_175318	101685.0	Mm.155687	NM_175318	ENSMUSG00000049516	Spty2d1	5830435K17Rik|AI852426|P16H6	SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-53759643-2	chr11	53759543	53759743	+	604.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4011.0	NR_106131	102465772.0		NR_106131	ENSMUSG00000099153	Mir7671	Gm27802|mmu-mir-7671	microRNA 7671	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-22805713-4	chr8	22805595	22805795	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001122820)	promoter-TSS (NM_001122820)	-41.0	NM_001122820	64933.0	Mm.390023	NM_029505	ENSMUSG00000031539	Ap3m2	5830445E16Rik|AP-3B	adaptor-related protein complex 3, mu 2 subunit	protein-coding	6.33312423582386	6.41641579432015	6.72880293938919	6.50930919377208	6.55142537610732	6.60736697038981	7.10569537534104	6.54791907408016	0.233512926255801	0.255218458220742	0.753348629260077
Merged-chr2-96387759-2	chr2	96387659	96387859	+	679.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289742, intron 1 of 7)	L1_Mus3|LINE|L1	69590.0	NM_001289743	241568.0	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-25027956-1	chr19	25027856	25028056	+	553.0	f1_balb.idr	intron (NM_028785, intron 1 of 47)	ORR1E|LTR|ERVL-MaLR	28427.0	NM_028785	76088.0	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	1.49750318057802	1.16437633880809	2.14130621973469	1.09731356368758	1.97147445937862	2.79713225221362	3.28449757181726	1.94450610886739	2.56481532974903	0.0129905900451801	0.131122603135343
Merged-chr7-123431371-4	chr7	123431275	123431475	+	797.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23558.0	NM_001355050	30949.0	Mm.260527	NM_025304	ENSMUSG00000030763	Lcmt1	AL033290|LCMT-1|Lcmt	leucine carboxyl methyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-115818375-2	chr3	115818275	115818475	+	730.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	69684.0	NR_027894	68161.0	Mm.392043	NR_015487	ENSMUSG00000054426	A930005H10Rik	-	RIKEN cDNA A930005H10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-99216878-4	chr5	99216785	99216985	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_145839)	TTS (NM_145839)	36042.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118421685-2	chr11	118421585	118421785	+	799.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2567.0	NM_001267592	76025.0	Mm.177551	NM_029502	ENSMUSG00000025575	Cant1	5830420C20Rik|Apy1h|D11Bwg0554e|Entpd8|SCAN-1|Shapy	calcium activated nucleotidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-22850442-6	chr11	22850420	22850620	+	881.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001169114, intron 1 of 1)	intron (NM_001169114, intron 1 of 1)	9215.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-24477513-4	chr19	24477398	24477598	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026520)	promoter-TSS (NM_026520)	-24.0	NM_026520	68034.0	Mm.440181	NM_026520	ENSMUSG00000074922	Fam122a	2410124L17Rik|2900009I07Rik|Gm9849	family with sequence similarity 122, member A	protein-coding	7.17036856625814	6.7832138883342	7.50031395056803	6.99588070736159	7.26723589673751	6.84918599324595	7.47792137135607	7.09779152570297	0.0577936564012007	0.763690148181053	0.998431161219273
Merged-chr14-20546580-4	chr14	20546490	20546690	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310427)	promoter-TSS (NM_001310427)	-17.0	NM_008914	19056.0	Mm.274432	NM_008914	ENSMUSG00000021816	Ppp3cb	1110063J16Rik|Calnb|CnAbeta|Cnab	protein phosphatase 3, catalytic subunit, beta isoform	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165056611-5	chr2	165056568	165056768	+	833.862854	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027852, intron 1 of 7)	intron (NR_027852, intron 1 of 7)	1032.0	NM_011611	21939.0	Mm.271833	NM_011611	ENSMUSG00000017652	Cd40	AI326936|Bp50|GP39|HIGM1|IGM|IMD3|T-BAM|TRAP|Tnfrsf5|p50	CD40 antigen	protein-coding	0.0607605421209532	0.60887274864842	0.22244206866503	0.0659035624041374	0.482886050660955	0.392221939460769	0.0699387984449385	0.0664491504313361	0.0142825665549106	0.994603507676018	1
Merged-chr7-44745339-4	chr7	44745240	44745440	+	996.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289839, intron 1 of 4)	intron (NM_001289839, intron 1 of 4)	3009.0	NM_001289836	243963.0	Mm.382935	NM_178734	ENSMUSG00000048012	Zfp473	D030014N22Rik|Znf473|zfp-100	zinc finger protein 473	protein-coding	4.75960822111972	4.65814752759716	4.39400660073024	5.32344140131685	4.95694111811072	5.37156636160864	5.04101986908307	5.39920774120144	0.440386139142462	0.189311087105657	0.667555616405381
Merged-chr15-78171817-2	chr15	78171717	78171917	+	773.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025931, intron 1 of 6)	intron (NM_025931, intron 1 of 6)	2291.0	NM_025931	67042.0	Mm.30191	NM_025931	ENSMUSG00000016637	Ift27	2600013G09Rik|Rabl4	intraflagellar transport 27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-51813276-6	chr17	51813196	51813396	+	991.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163632, intron 1 of 10)	CpG	-1112.0	NM_001357636	20230.0	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-122573636-4	chr3	122573534	122573734	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114665, intron 2 of 15)	intron (NM_001114665, intron 2 of 15)	-31953.0	NR_106117	102465764.0		NR_106117	ENSMUSG00000104773	Mir7657	mmu-mir-7657	microRNA 7657	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-15831408-2	chr17	15831308	15831508	+	975.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4822.0	NM_178615	68799.0	Mm.293466	NM_178615	ENSMUSG00000048027	Rgmb	1110059F19Rik|DRAGON	repulsive guidance molecule family member B	protein-coding	0.0871436852255825	0.106718245055458	0.100330690040008	0.648086040104436	0.0883725836094936	0.108154916134972	0.805652082464242	0.655252834390404	1.27547139659194	0.555908889588725	1
Merged-chr11-17005707-4	chr11	17005608	17005808	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019549, intron 1 of 9)	intron (NM_019549, intron 1 of 9)	3010.0	NM_019549	56193.0	Mm.98232	NM_019549	ENSMUSG00000020120	Plek	2010300B13Rik	pleckstrin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-134541086-3	chr5	134540981	134541181	+	839.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039162, intron 1 of 15)	intron (NM_001039162, intron 1 of 15)	11353.0	NM_001039162	269713.0	Mm.255138	NM_009990	ENSMUSG00000063146	Clip2	B230327O20|CLIP-115|Clip1|Cyln2|WSCR4|mKIAA0291|wbscr4	CAP-GLY domain containing linker protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-134101743-1	chr5	134101643	134101843	+	552.0	f0_c57.idr	intron (NM_030719, intron 1 of 8)	intron (NM_030719, intron 1 of 8)	1995.0	NM_030719	80909.0	Mm.45218	NM_030719	ENSMUSG00000015944	Gatsl2	7530428J21Rik|AW742413|Castor2|Gats|Gatsl1	GATS protein-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-50219170-2	chr8	50219070	50219270	+	556.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-148942.0	NR_046067	100039954.0	Mm.400419	NR_046067	ENSMUSG00000110281	Gm2516	-	predicted gene 2516	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80173106-4	chr10	80173027	80173227	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_152857)	TTS (NR_152857)	183.0	NM_027207	69770.0	Mm.302754	NM_027207	ENSMUSG00000035595	1600002K03Rik	-	RIKEN cDNA 1600002K03 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4304422-4	chr19	4304340	4304540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290818, intron 1 of 20)	intron (NM_001290818, intron 1 of 20)	1782.0	NM_130863	110355.0	Mm.254144	NM_130863	ENSMUSG00000024858	Grk2	Adrbk-1|Adrbk1|Bark-1|beta ARK|betaARK1	G protein-coupled receptor kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-10373253-1	chr8	10373153	10373353	+	552.0	f0_balb.idr	intron (NM_001319151, intron 7 of 34)	intron (NM_001319151, intron 7 of 34)	219342.0	NM_001319151	244281.0	Mm.422761	NM_001081397	ENSMUSG00000039057	Myo16	BM140241|C230040D10Rik|Gm1105|NYAP3|mKIAA0865	myosin XVI	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-23878383-3	chr5	23878247	23878447	+	945.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	26114.0	NR_028536	100217436.0		NR_028536		Snord93	Gm22397|MBII-336	small nucleolar RNA, C/D box 93	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19137533-1	chr7	19137433	19137633	+	544.0	f1_c57bl6.idr	3' UTR (NM_175530, exon 2 of 2)	3' UTR (NM_175530, exon 2 of 2)	11663.0	NM_026111	67369.0	Mm.234876	NM_026111	ENSMUSG00000030407	Qpctl	1810019P04Rik|BB101812|gQC	glutaminyl-peptide cyclotransferase-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-133046835-3	chr1	133046758	133046958	+	631.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001099276, intron 1 of 32)	intron (NM_001099276, intron 1 of 32)	846.0	NM_001099276	240752.0	Mm.387308	NM_001099276	ENSMUSG00000026447	Pik3c2b	C330011J12Rik|Gm199|PI3K-C2beta|PI3KC2beta	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-18360081-2	chr5	18359981	18360181	+	712.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_010305, exon 1 of 8)	exon (NM_010305, exon 1 of 8)	332.0	NM_010305	14677.0	Mm.254629	NM_010305	ENSMUSG00000057614	Gnai1	AU046200|Gialpha1|Gnai-1	guanine nucleotide binding protein (G protein), alpha inhibiting 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-124439363-2	chr9	124439263	124439463	+	862.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	15576.0	NR_015516	75135.0	Mm.476814	NR_015516		4930526I15Rik	1600027J15Rik	RIKEN cDNA 4930526I15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-100466818-3	chr5	100466700	100466900	+	669.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001115010, intron 4 of 12)	intron (NM_001115010, intron 4 of 12)	31773.0	NM_001115010	231506.0	Mm.212568	NM_172714	ENSMUSG00000035310	Lin54	AI461788	lin-54 homolog (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-67405695-4	chr15	67405593	67405793	+	891.7374880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	178924.0	NR_045140	69334.0	Mm.63770	NR_045140	ENSMUSG00000102069	1700012I11Rik	-	RIKEN cDNA 1700012I11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-76463627-1	chr11	76463527	76463727	+	553.0	f1_balb.idr	exon (NM_001291186, exon 3 of 18)	exon (NM_001291186, exon 3 of 18)	4838.0	NM_001291186	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	2.72920656398244	2.46454154713789	3.12434763720653	2.8745427834217	2.75167907402447	1.61300597823382	2.97917356426034	3.05409359666371	-0.192009404178042	0.801584999731026	0.998431161219273
Merged-chr2-50295681-2	chr2	50295581	50295781	+	750.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133839, intron 2 of 7)	B3|SINE|B2	1120.0	NM_001348200	109129.0	Mm.29214	NM_133839	ENSMUSG00000026766	Mmadhc	2010311D03Rik|AI314967|CblD	methylmalonic aciduria (cobalamin deficiency) cblD type, with homocystinuria	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10203965-4	chr19	10203891	10204091	+	995.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026919)	promoter-TSS (NM_026919)	-48.0	NM_001271614	14156.0	Mm.2952	NM_007999	ENSMUSG00000024742	Fen1	AW538437|FEN-1	flap structure specific endonuclease 1	protein-coding	2.67722766568259	3.12387831301482	3.60965690675025	1.96795361862925	2.70090785096377	3.14739790765038	3.63676313285668	1.47353993102914	-0.0375278856783426	0.963470150294393	0.998431161219273
Merged-chr18-5807265-4	chr18	5807139	5807339	+	921.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	214592.0	NM_001360981	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-91148292-2	chr5	91148192	91148392	+	716.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009704, exon 6 of 6)	3' UTR (NM_009704, exon 6 of 6)	8693.0	NM_009704	11839.0	Mm.8039	NM_009704	ENSMUSG00000029378	Areg	AR|Mcub|Sdgf	amphiregulin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-79729392-4	chr7	79729301	79729501	+	809.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175640, intron 3 of 8)	intron (NM_175640, intron 3 of 8)	3375.0	NM_175640	103968.0	Mm.254917	NM_175640	ENSMUSG00000030546	Plin1	6030432J05Rik|Peri|Plin	perilipin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97690053-2	chr11	97689953	97690153	+	881.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_009545, exon 13 of 13)	exon (NM_009545, exon 13 of 13)	4101.0	NM_001085500	217149.0	Mm.29659	NM_001085500	ENSMUSG00000078695	Cisd3	Mel-13|Mel13	CDGSH iron sulfur domain 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-33827763-2	chr17	33827663	33827863	+	890.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023202, intron 2 of 3)	intron (NM_023202, intron 2 of 3)	3118.0	NR_103514	66416.0	Mm.29513	NM_023202	ENSMUSG00000041881	Ndufa7	14.5kDa|2400007M02Rik|CI-B14.5a	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7 (B14.5a)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-18779794-4	chr13	18779682	18779882	+	833.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172120, intron 4 of 28)	MTC|LTR|ERVL-MaLR	62490.0	NM_172120	218035.0	Mm.27389	NM_172120	ENSMUSG00000041236	Vps41	AI317346|Vam2|mVam2	VPS41 HOPS complex subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-16343582-1	chr19	16343482	16343682	+	756.0	f0_balb.idr	intron (NM_008139, intron 5 of 6)	intron (NM_008139, intron 5 of 6)	-28578.0	NR_105832	102465218.0		NR_105832	ENSMUSG00000098718	Mir496b	Gm28028|mmu-mir-496b	microRNA 496b	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-153262159-4	chr3	153262073	153262273	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011372, intron 3 of 4)	intron (NM_011372, intron 3 of 4)	36476.0	NR_126464	75489.0	Mm.443252	NR_126464	ENSMUSG00000105023	1700012D16Rik	-	RIKEN cDNA 1700012D16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-51535502-4	chr10	51535407	51535607	+	891.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	44609.0	NM_013532	14728.0	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-186202734-3	chr1	186202612	186202812	+	886.9722289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-85402.0	NM_146106	226791.0	Mm.257116	NM_146106	ENSMUSG00000039246	Lyplal1	BC027340|Q96AVO	lysophospholipase-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-20815781-4	chr12	20815674	20815874	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015521)	promoter-TSS (NR_015521)	5.0	NR_015521	69513.0	Mm.273972	NR_015521	ENSMUSG00000099759	1700030C10Rik	-	RIKEN cDNA 1700030C10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-113911366-1	chr2	113911266	113911466	+	779.0	f0_balb.idr	Intergenic	Intergenic	-62705.0	NM_181416	228482.0	Mm.45753	NM_181416	ENSMUSG00000041219	Arhgap11a	6530401L14Rik|mKIAA0013	Rho GTPase activating protein 11A	protein-coding	-0.433655847540424	-0.560465389253951	-0.563829304529398	-0.566415571607581	-0.0204850529824269	-0.210952773818656	-0.563088506889874	-0.565964331509351	2.45364634606482	0.354170592552425	1
Merged-chr3-138493914-4	chr3	138493821	138494021	+	947.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4539.0	NM_175224	75624.0	Mm.26833	NM_175224	ENSMUSG00000005813	Metap1	1700029C17Rik|AW047992|mKIAA0094	methionyl aminopeptidase 1	protein-coding	2.73625120842534	2.90093791564497	1.39167457794187	1.61574712503293	2.31085529390831	2.47079886541731	3.20661542952723	2.54275733646205	0.692189326489518	0.43994811765534	0.909249686890578
Merged-chr12-3339344-2	chr12	3339244	3339444	+	801.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25788.0	NM_008445	16570.0	Mm.7688	NM_008445	ENSMUSG00000020668	Kif3c	mKIAA4058	kinesin family member 3C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133520895-1	chr4	133520795	133520995	+	593.0	f1_balb.idr	intron (NM_001083916, intron 1 of 3)	intron (NM_001083916, intron 1 of 3)	1932.0	NM_133707	69073.0	Mm.299081	NM_133707	ENSMUSG00000037600	Kdf1	1810019J16Rik	keratinocyte differentiation factor 1	protein-coding	-0.559281895742325	-0.686470032179927	-0.689528542471175	-0.179531438632571	-0.695186478294564	-0.685778743551657	-0.688855127545811	-0.396119637370247	-1.17466276071662	0.67151026783841	1
Merged-chr15-78262827-1	chr15	78262727	78262927	+	571.0	f1_balb.idr	TTS (NM_008677)	TTS (NM_008677)	18016.0	NM_008677	17972.0	Mm.2068	NM_008677	ENSMUSG00000071715	Ncf4	AI451400|p40phox	neutrophil cytosolic factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-4161509-3	chr12	4161403	4161603	+	898.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159537, intron 2 of 21)	URR1B|DNA|hAT-Charlie	27350.0	NM_138305	104111.0	Mm.489807	NM_138305	ENSMUSG00000020654	Adcy3	AC3|mKIAA0511	adenylate cyclase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-86216715-4	chr15	86216616	86216816	+	840.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145476, intron 1 of 12)	MLT1C|LTR|ERVL-MaLR	2257.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-75886113-4	chr15	75886016	75886216	+	794.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001282443, intron 7 of 13)	intron (NM_001282443, intron 7 of 13)	2607.0	NM_001282443	223645.0		NM_001282443	ENSMUSG00000098678	Mroh6	Gm19570	maestro heat-like repeat family member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-119341142-4	chr9	119341039	119341239	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_130864)	promoter-TSS (NM_130864)	-155.0	NM_130864	113868.0	Mm.205266	NM_130864	ENSMUSG00000036138	Acaa1a	Acaa|Acaa1|D9Ertd25e|PTL	acetyl-Coenzyme A acyltransferase 1A	protein-coding	6.68983557889352	6.5380977210935	6.74193110446936	6.48266309945155	6.50654073767056	6.80394274270439	6.47067719965646	6.62624872171348	-0.0150144280054944	0.936579098760692	0.998431161219273
Merged-chr14-105329447-1	chr14	105329347	105329547	+	607.0	f1_c57bl6.idr	Intergenic	Intergenic	70774.0	NM_001190989	76273.0	Mm.290669	NM_029561	ENSMUSG00000053253	Ndfip2	0710001O20Rik|2810436B12Rik|9130207N19Rik|N4wbp5a|mKIAA1165	Nedd4 family interacting protein 2	protein-coding	0.307844609996502	0.336559654970599	0.327276329206998	1.03023362643396	0.624373443478803	1.35669667194532	0.329333735405785	0.673729091045383	1.32531392976013	0.467396277817451	1
Merged-chr2-173679429-3	chr2	173679328	173679528	+	942.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024436, intron 2 of 6)	intron (NM_024436, intron 2 of 6)	19583.0	NM_024436	19334.0	Mm.275304	NM_024436	ENSMUSG00000027519	Rab22a	3732413A17Rik|AI662177|AW319644|AW550514|E130120E14Rik|Rab22	RAB22A, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-102987129-4	chr2	102987041	102987241	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-85476.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-112330874-2	chr5	112330774	112330974	+	610.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_018783, intron 5 of 13)	intron (NM_018783, intron 5 of 13)	4505.0	NM_018783	54723.0	Mm.172947	NM_018783	ENSMUSG00000029345	Tfip11	2810002G02Rik|AF097181|AW046167|Srr1|TIP33|Tip39	tuftelin interacting protein 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115156964-3	chr11	115156827	115157027	+	820.583313	f1_balb.idr|f1_c57bl6.idr	exon (NM_021411, exon 2 of 9)	exon (NM_021411, exon 2 of 9)	2749.0	NM_021411	58222.0	Mm.143789	NM_021411	ENSMUSG00000020732	Rab37	B230331O03Rik|B230354I04Rik	RAB37, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80998973-2	chr10	80998873	80999073	+	852.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_010319, intron 1 of 3)	intron (NM_010319, intron 1 of 3)	2392.0	NM_001038655	14708.0	Mm.222496	NM_010319	ENSMUSG00000048240	Gng7	AI840417	guanine nucleotide binding protein (G protein), gamma 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-81983326-4	chr3	81983213	81983413	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7585.0	NM_019911	56720.0	Mm.258622	NM_019911	ENSMUSG00000028011	Tdo2	AA407491|TDO|TO|chky	tryptophan 2,3-dioxygenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-53216861-4	chr6	53216760	53216960	+	744.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4304.0	NR_073371	231989.0	Mm.372520	NR_073371	ENSMUSG00000107935	Gm4872	D430007I03	predicted gene 4872	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-81352505-4	chr13	81352392	81352592	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 83 of 89)	intron (NM_054053, intron 83 of 89)	280652.0	NM_054053	110789.0	Mm.288694	NM_054053	ENSMUSG00000069170	Adgrv1	Frings|Gpr98|Mass1|Mgr1|VLGR1	adhesion G protein-coupled receptor V1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36509168-2	chr1	36509068	36509268	+	560.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_033570)	TTS (NM_033570)	-2699.0	NM_001331209	94218.0	Mm.256323	NM_053186	ENSMUSG00000001138	Cnnm3	Acdp3|Clp3|mACDP3	cyclin M3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-174441762-5	chr2	174441610	174441810	+	747.43335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2671.0	NM_022325	64138.0	Mm.156919	NM_022325	ENSMUSG00000016256	Ctsz	AI787083|AU019819|CTSX|D2Wsu143e	cathepsin Z	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81287813-3	chr10	81287672	81287872	+	902.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001282095, intron 1 of 20)	RSINE1|SINE|B4	-1991.0	NM_001282096	27375.0	Mm.27984	NM_013769	ENSMUSG00000034917	Tjp3	-	tight junction protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-51755682-2	chr11	51755582	51755782	+	839.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290785, intron 1 of 22)	intron (NM_001290785, intron 1 of 22)	1152.0	NM_001290785	77371.0	Mm.33878	NM_175255	ENSMUSG00000036391	Sec24a	-	Sec24 related gene family, member A (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-45403122-2	chr9	45403022	45403222	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_052823)	promoter-TSS (NM_052823)	-16.0	NM_052823	11936.0	Mm.22742	NM_007503	ENSMUSG00000059412	Fxyd2	Atp1g1	FXYD domain-containing ion transport regulator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-63719412-2	chr4	63719312	63719512	+	567.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	25701.0	NM_177371	326623.0	Mm.208152	NM_177371	ENSMUSG00000050395	Tnfsf15	Tl1|Tl1a|Tnlg1b|Vegi	tumor necrosis factor (ligand) superfamily, member 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-54459600-2	chr12	54459500	54459700	+	848.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68282.0	NR_033689	665239.0	Mm.26856	NR_033689		Gm7550	EG665239|Gm666	predicted gene 7550	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-8624696-2	chr18	8624596	8624796	+	688.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M3b|LINE|L1	-588160.0	NM_008058	14370.0	Mm.184289	NM_008058	ENSMUSG00000036904	Fzd8	Fz8	frizzled class receptor 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-45277773-4	chr2	45277678	45277878	+	918.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-160336.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-53599061-1	chr10	53598961	53599161	+	546.0	f1_balb.idr	intron (NM_025541, intron 1 of 3)	intron (NM_025541, intron 1 of 3)	2100.0	NM_025541	66403.0	Mm.272989	NM_025541	ENSMUSG00000019857	Asf1a	2310079C17Rik|C79052	anti-silencing function 1A histone chaperone	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-14904673-2	chr17	14904573	14904773	+	722.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175173, intron 17 of 24)	intron (NM_175173, intron 17 of 24)	38451.0	NM_175173	71682.0	Mm.122698	NM_175173	ENSMUSG00000046991	Wdr27	0610012K18Rik	WD repeat domain 27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3779871-2	chr12	3779771	3779971	+	843.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007886, intron 18 of 18)	intron (NM_007886, intron 18 of 18)	-27109.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56009223-4	chr17	56009128	56009328	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026530)	promoter-TSS (NM_026530)	27.0	NM_026530	68047.0	Mm.358710	NM_026530	ENSMUSG00000003199	Mpnd	E130307M08Rik	MPN domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-55309731-4	chr9	55309633	55309833	+	815.31665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17180.0	NM_172923	244886.0	Mm.24361	NM_172923	ENSMUSG00000032313	Tmem266	9630029F15|AI118078|HVRP1	transmembrane protein 266	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-9066058-4	chr19	9065847	9066047	+	897.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286518, intron 6 of 6)	intron (NM_001286518, intron 6 of 6)	22009.0	NM_011681	22287.0	Mm.2258	NM_011681	ENSMUSG00000024653	Scgb1a1	CC10|CC16|CCSP|PCB-BP|UG|UGB|Utg	secretoglobin, family 1A, member 1 (uteroglobin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-166730402-4	chr1	166730309	166730509	+	783.55835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4B|LINE|L1	-48564.0	NM_001347135	240894.0	Mm.246610	NM_172844	ENSMUSG00000026560	Fmo9	4831428F09Rik	flavin containing monooxygenase 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-94723237-2	chr16	94723137	94723337	+	870.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13D3A1|LTR|ERVK	111818.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-53326531-2	chr19	53326431	53326631	+	868.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360348, intron 1 of 5)	intron (NM_001360348, intron 1 of 5)	-2882.0	NM_010847	17859.0	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-121445360-4	chr14	121445260	121445460	+	861.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	59894.0	NM_053079	56643.0	Mm.155618	NM_053079	ENSMUSG00000025557	Slc15a1	D630032F02|PECT1|PEPT1	solute carrier family 15 (oligopeptide transporter), member 1	protein-coding	0.884909302606771	0.346960043548135	0.905493587664083	0.334878387934452	0.709330980252443	0.348496519555849	0.34164586782904	0.872659548496161	-0.356699745965608	0.84957438038818	1
Merged-chr17-35700658-3	chr17	35700585	35700785	+	662.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001198833)	promoter-TSS (NM_001198833)	-95.0	NM_001198833	12305.0	Mm.5021	NM_007584	ENSMUSG00000003534	Ddr1	6030432F18|AI323681|CD167a|Cak|Nep|PTK3A	discoidin domain receptor family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135990791-4	chr5	135990680	135990880	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4020.0	NM_023742	74198.0	Mm.275574	NM_023742	ENSMUSG00000004947	Dtx2	2610524D08Rik|AA408415|AU022494|Deltex2	deltex 2, E3 ubiquitin ligase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36319057-3	chr18	36318938	36319138	+	756.366638	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18937.0	NM_001267796	109169.0	Mm.426423	NM_001267796	ENSMUSG00000110185	Igip	6330403M23Rik	IgA inducing protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98206550-2	chr11	98206450	98206650	+	859.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026952, intron 1 of 12)	B2_Mm1a|SINE|B2	3245.0	NM_001109626	69131.0	Mm.260516	NM_026952	ENSMUSG00000003119	Cdk12	1810022J16Rik|AI646528|Crk7|Crkrs|D11Ertd752e|Pksc	cyclin-dependent kinase 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106038297-2	chr11	106038197	106038397	+	868.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027946, intron 1 of 6)	intron (NM_027946, intron 1 of 6)	1425.0	NM_027946	71833.0	Mm.307455	NM_027946	ENSMUSG00000049354	Dcaf7	1700012F10Rik|2610037L01Rik|C86529|HAN11|Wdr68	DDB1 and CUL4 associated factor 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-102734822-5	chr3	102734746	102734946	+	837.733337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001243132)	promoter-TSS (NM_001243132)	76.0	NM_027533	70747.0	Mm.27469	NM_027533	ENSMUSG00000027858	Tspan2	6330415F13Rik|B230119D02Rik|tspan-2	tetraspanin 2	protein-coding	-0.499413470377264	-1.03834020755092	-1.04978821074571	-1.05496685457339	-1.05780584112407	-1.03585937750212	-0.870737526210697	-1.05461535941458	-1.71235507421434	0.593270402199609	1
Merged-chr2-124202792-4	chr2	124202677	124202877	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290997, intron 2 of 20)	intron (NM_001290997, intron 2 of 20)	19581.0	NR_040612	75946.0	Mm.415059	NR_040612	ENSMUSG00000086954	4930583P06Rik	-	RIKEN cDNA 4930583P06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-90140454-4	chr7	90140344	90140544	+	964.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360867, intron 1 of 19)	intron (NM_001360867, intron 1 of 19)	10231.0	NM_001252520	233489.0	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	2.35390287505049	1.89025356823711	1.48322585173318	2.03406801142875	2.37340213205978	1.90344847536557	1.49203864437283	2.04433425168389	0.0377459805084535	0.969286832664733	0.998431161219273
Merged-chr19-4906641-4	chr19	4906520	4906720	+	896.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033128)	promoter-TSS (NM_001033128)	7.0	NM_001033128	52028.0	Mm.23636	NM_001033128	ENSMUSG00000006464	Bbs1	AI451249|D19Ertd609e	Bardet-Biedl syndrome 1 (human)	protein-coding	3.67302387889156	4.69808815760994	2.51744671220161	3.02518471099237	4.41657593529079	3.77226699786038	3.64676278129061	3.6121349461046	0.241962381509761	0.685529092230083	0.996533206832645
Merged-chr7-15983122-2	chr7	15983022	15983222	+	712.700012	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081418, intron 6 of 13)	intron (NM_001081418, intron 6 of 13)	-15587.0	NM_153068	259300.0	Mm.138215	NM_153068	ENSMUSG00000074364	Ehd2	BC027084|C130052H20Rik	EH-domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-7089890-2	chr1	7089790	7089990	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183028, intron 1 of 5)	ID_B1|SINE|B4	970.0	NM_183028	319263.0	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-68579836-3	chr7	68579817	68580017	+	827.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38539.0	NR_003648	384639.0	Mm.261760	NM_001013781		Gm5334	EG384639	tetraspanin 7 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-106581945-4	chr1	106581821	106582021	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009741, intron 1 of 1)	intron (NM_009741, intron 1 of 1)	-35290.0	NR_106164	102466254.0		NR_106164	ENSMUSG00000098344	Mir3473f	Gm27846|mmu-mir-3473f	microRNA 3473f	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-117093089-4	chr2	117092951	117093151	+	842.645874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28020.0	NM_001277256	114715.0	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-47750239-2	chr8	47750139	47750339	+	628.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-36308.0	NM_172407	70925.0	Mm.393807	NM_172407	ENSMUSG00000038069	Cdkn2aip	4921511I16Rik|AW208986|CARF	CDKN2A interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-73760159-2	chr18	73760057	73760257	+	634.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-5678.0	NM_053255	114615.0	Mm.50642	NM_053255	ENSMUSG00000036941	Elac1	2610018O07Rik|8430417G19Rik	elaC ribonuclease Z 1	protein-coding	-1.11301502176196	-1.08843027643983	-1.10065540268584	-0.337074946373353	-1.11242900008663	-1.08578104058399	-1.09788790207088	-1.10867028474752	-2.94135471364006	0.382729701075202	1
Merged-chr18-66453552-4	chr18	66453429	66453629	+	997.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-5075.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-92968474-2	chr2	92968374	92968574	+	617.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53373.0	NM_030725	80976.0	Mm.33490	NM_030725	ENSMUSG00000027220	Syt13	5730409J20Rik|AI549909|mKIAA1427	synaptotagmin XIII	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-44371969-4	chr10	44371880	44372080	+	755.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12304.0	NR_035450	100316688.0		NR_035450	ENSMUSG00000089260	Mir1929	mir-1929|mmu-mir-1929	microRNA 1929	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85485442-2	chr12	85485342	85485542	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	11552.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84664098-4	chr8	84663990	84664190	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1238.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	5.29024973963009	5.17083715408135	4.70585591797332	5.45283274903335	5.44320036243512	5.85468720943177	4.88171577707133	5.69014158162441	0.375868974503541	0.230564219605981	0.724578472075965
Merged-chr8-39403968-3	chr8	39403867	39404067	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	105987.0	NR_044988	621335.0	Mm.208080	NR_044988	ENSMUSG00000109827	Gm6213	EG621335	predicted gene 6213	ncRNA	2.31764596480934	2.72900499158809	1.61332778459285	1.53261875746548	5.09403726571154	5.50824198840069	5.6812346978722	5.7834362191398	4.94813274129742	4.19938898082938e-16	3.43529106763574e-13
Merged-chr11-78164793-2	chr11	78164693	78164893	+	758.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009423, intron 1 of 6)	MIR|SINE|MIR	757.0	NM_009423	22032.0	Mm.390418	NM_009423	ENSMUSG00000017386	Traf4	A530032M13Rik|CART1|msp2	TNF receptor associated factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-35042537-2	chr9	35042440	35042640	+	728.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10B|LTR|ERVL	-74188.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	0.0622626493509903	-0.200894411891215	-0.206080198051592	0.692218299226614	0.0690666507232234	-0.199727389286611	-0.204935215972894	-0.209389710737883	-2.29569152373984	0.333631245481605	1
Merged-chr11-116022618-4	chr11	116022511	116022711	+	729.785706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008211, exon 4 of 4)	3' UTR (NM_008211, exon 4 of 4)	1893.0	NM_008211	15081.0	Mm.18516	NM_008211	ENSMUSG00000016559	H3f3b	9430068D06Rik|H3.3B	H3 histone, family 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26779479-5	chr17	26779280	26779480	+	849.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1699.0	NM_172149	224630.0	Mm.21795	NM_172149	ENSMUSG00000024191	Bnip1	2010005M06Rik|5930429G21Rik|Sec20	BCL2/adenovirus E1B interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-70831359-3	chr12	70831249	70831449	+	891.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028127, intron 1 of 13)	intron (NM_028127, intron 1 of 13)	5835.0	NM_028127	319710.0	Mm.2962	NM_028127	ENSMUSG00000048285	Frmd6	2610019M19Rik|4930488L10Rik|AW212977|Willin	FERM domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-86018391-4	chr1	86018290	86018490	+	775.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-3552.0	NM_001122732	70060.0	Mm.196313	NM_027029	ENSMUSG00000026226	Spata3	1700011N12Rik|1700029H01Rik|4930424D10Rik|Mtsarg1|Tsarg1	spermatogenesis associated 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91524235-4	chr16	91524126	91524326	+	858.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	3318.0	NR_105786	102465190.0		NR_105786	ENSMUSG00000099308	Mir6367	Gm27467|mmu-mir-6367	microRNA 6367	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-112324296-1	chr5	112324196	112324396	+	672.0	f1_balb.idr	Intergenic	Intergenic	-2073.0	NM_018783	54723.0	Mm.172947	NM_018783	ENSMUSG00000029345	Tfip11	2810002G02Rik|AF097181|AW046167|Srr1|TIP33|Tip39	tuftelin interacting protein 11	protein-coding	1.18608221433117	2.07030694592914	1.28719968151008	0.998471418344758	1.94458676741839	2.62061933717983	2.86395290323295	1.00256885223877	2.15450685293124	0.0638580236809365	0.376569834111393
Merged-chr1-65180006-4	chr1	65179923	65180123	+	985.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010497)	promoter-TSS (NM_010497)	-881.0	NM_010497	15926.0	Mm.9925	NM_010497	ENSMUSG00000025950	Idh1	AI314845|AI788952|E030024J03Rik|Id-1|Idh-1|Idpc	isocitrate dehydrogenase 1 (NADP+), soluble	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-4560696-4	chr2	4560584	4560784	+	841.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177844, intron 1 of 11)	intron (NM_001177844, intron 1 of 11)	930.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-138138126-2	chr5	138138026	138138226	+	556.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	17618.0	NM_019747	56314.0	Mm.19274	NM_019747	ENSMUSG00000037007	Zfp113	4732456B05Rik|mKIAA4229	zinc finger protein 113	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-79397969-4	chr14	79397865	79398065	+	939.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_145960, exon 1 of 11)	5' UTR (NM_145960, exon 1 of 11)	193.0	NM_145960	211253.0	Mm.35306	NM_145960	ENSMUSG00000022022	Mtrf1	A830062K05Rik|MtRF-1	mitochondrial translational release factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-51649933-2	chr11	51649833	51650033	+	611.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_145974, intron 1 of 4)	intron (NM_145974, intron 1 of 4)	-1021.0	NR_027958	97775.0	Mm.220299	NM_175289	ENSMUSG00000052563	D930048N14Rik	AI315703|R75254	RIKEN cDNA D930048N14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-103316843-2	chr11	103316743	103316943	+	592.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1G3|LTR|ERVL-MaLR	27859.0	NM_133715	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-55466909-2	chr11	55466809	55467009	+	825.916626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	-2843.0	NM_013716	27041.0	Mm.39631	NM_013716	ENSMUSG00000018583	G3bp1	AI849976|B430204O07|C87777|G3bp|mKIAA4115	GTPase activating protein (SH3 domain) binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-66973351-4	chr6	66973274	66973474	+	970.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177560, intron 3 of 4)	intron (NM_001177560, intron 3 of 4)	-63225.0	NR_040278	320172.0	Mm.449039	NR_040278	ENSMUSG00000087231	E230016M11Rik	-	RIKEN cDNA E230016M11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96599813-1	chr3	96599713	96599913	+	794.0	f1_c57bl6.idr	TTS (NM_001024851)	TTS (NM_001024851)	-1320.0	NM_001163170	280411.0	Mm.482147	NM_001163170	ENSMUSG00000049288	Lix1l	D130027M04Rik	Lix1-like	protein-coding	0.243895795045204	-0.648319924327625	-0.652455172904837	-0.655657657699384	-0.660201318544389	-0.432903344657692	-0.651541608506028	-0.655097430232502	-2.55293753659448	0.361405292555567	1
Merged-chr11-43384625-4	chr11	43384533	43384733	+	941.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10172.0	NR_029558	387164.0		NR_029558	ENSMUSG00000065601	Mir146	Mirn146|miR-146a|mmu-mir-146	microRNA 146	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-70835766-2	chr17	70835666	70835866	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11011.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-81343157-2	chr16	81343057	81343257	+	891.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113208, intron 1 of 17)	intron (NM_001113208, intron 1 of 17)	142460.0	NM_010954	17968.0	Mm.433941	NM_010954	ENSMUSG00000022762	Ncam2	Ncam-2|Ocam|RNCAM	neural cell adhesion molecule 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-63196019-4	chr14	63195957	63196157	+	844.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2532.0	NM_201610	382913.0	Mm.239490	NM_201610	ENSMUSG00000035121	Neil2	Gm1212|NEH2	nei like 2 (E. coli)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94480649-3	chr10	94480558	94480758	+	952.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 2 of 4)	intron (NM_001359762, intron 2 of 4)	-34199.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-92356095-4	chr8	92355963	92356163	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033641)	promoter-TSS (NR_033641)	57.0	NR_110452	71296.0	Mm.86664	NR_033641	ENSMUSG00000031736	Crnde	4933436C20Rik	colorectal neoplasia differentially expressed (non-protein coding)	ncRNA	3.97647927205847	3.39146932186211	4.47464380567634	2.93197789769511	3.90621023925687	4.29355134936836	4.5059943209389	2.81019873311284	0.263545256128994	0.642032211664411	0.982599433509505
Merged-chr17-84376130-1	chr17	84376030	84376230	+	571.0	f0_balb.idr	intron (NM_183021, intron 26 of 37)	intron (NM_183021, intron 26 of 37)	90078.0	NM_183021	240174.0	Mm.246767	NM_177826	ENSMUSG00000024251	Thada	6530405K19|A930021O22|AU019899|BC052885|GITA	thyroid adenoma associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-146820810-2	chr5	146820666	146820866	+	576.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12124.0	NM_019647	19933.0	Mm.316592	NM_019647	ENSMUSG00000041453	Rpl21	8430440E03Rik|L21	ribosomal protein L21	protein-coding	0.702007352459463	1.09879457474644	1.05192642890392	1.01498713577887	0.707134679605012	0.577524082577514	0.567934372311715	1.41654899504012	-0.417297016780461	0.785756113836566	1
Merged-chr2-84530718-3	chr2	84530631	84530831	+	590.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23858.0	NR_046046	672763.0	Mm.491046	NR_046046	ENSMUSG00000087362	Gm13710	-	predicted gene 13710	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-154687023-4	chr2	154686932	154687132	+	956.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029362, intron 1 of 4)	intron (NM_029362, intron 1 of 4)	30006.0	NM_029362	75608.0	Mm.262480	NM_029362	ENSMUSG00000038467	Chmp4b	2010012F05Rik|C76846|Snf7-2	charged multivesicular body protein 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83572414-4	chr11	83572330	83572530	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011338)	TTS (NM_011338)	6206.0	NM_011338	20308.0	Mm.416125	NM_011338	ENSMUSG00000019122	Ccl9	CCF18|MRP-2|Scya10|Scya9	chemokine (C-C motif) ligand 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-59540802-2	chr11	59540702	59540902	+	978.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359638)	promoter-TSS (NM_001359638)	-767.0	NM_001359638	216799.0	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84415290-3	chr8	84415179	84415379	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007578)	promoter-TSS (NM_007578)	-85.0	NM_001252060	12286.0	Mm.334658	NM_007578	ENSMUSG00000034656	Cacna1a	APCA|BI|Caca1a|Cacnl1a4|Cav2.1|Ccha1a|EA2|FHM|HPCA|MHP|MHP1|SCA6|alpha1A|la|nmf352|rkr|smrl|tg	calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105263551-4	chr8	105263430	105263630	+	867.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033161, intron 1 of 4)	intron (NM_001033161, intron 1 of 4)	1064.0	NM_001033161	71609.0	Mm.264255	NM_001033161	ENSMUSG00000031887	Tradd	9130005N23Rik|AA930854	TNFRSF1A-associated via death domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-92755419-4	chr1	92755307	92755507	+	944.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-76238.0	NM_016696	14733.0	Mm.297976	NM_016696	ENSMUSG00000034220	Gpc1	AI462976	glypican 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-33986665-3	chr11	33986576	33986776	+	800.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155520, intron 4 of 4)	LTR105_Mam|LTR|ERVL	6517.0	NM_001190886	70357.0	Mm.252514	NM_027398	ENSMUSG00000053519	Kcnip1	KCHIP1|Kchip1.2	Kv channel-interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-145019250-1	chr7	145019150	145019350	+	542.0	f1_c57bl6.idr	Intergenic	Intergenic	-79325.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	-0.413104798723359	0.0853879387755653	0.155772432823859	-0.408036658653398	-0.268282751593498	-0.40011048537979	-0.404102607871403	-0.407502609138017	-2.65283307048478	0.294028949509896	1
Merged-chr18-67393110-1	chr18	67393010	67393210	+	570.0	f1_c57bl6.idr	intron (NM_026473, intron 3 of 3)	intron (NM_026473, intron 3 of 3)	2379.0	NM_026473	67951.0	Mm.181860	NM_026473	ENSMUSG00000001473	Tubb6	2310057H16Rik|BB220206	tubulin, beta 6 class V	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-61582287-2	chr2	61582187	61582387	+	697.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011529, intron 1 of 7)	B4|SINE|B4	3701.0	NM_011529	21353.0	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-120605168-3	chr5	120605112	120605312	+	866.2777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029408, intron 4 of 4)	intron (NM_029408, intron 4 of 4)	7377.0	NM_029096	100764.0	Mm.9654	NM_029096	ENSMUSG00000029600	Rita1	1110008J03Rik|AI853657|C86297|Rita	RBPJ interacting and tubulin associated 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101405514-2	chr7	101405414	101405614	+	704.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_001040111, intron 29 of 33)	intron (NM_001040111, intron 29 of 33)	11126.0	NM_198096	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99226510-2	chr15	99226410	99226610	+	964.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_010601, exon 2 of 15)	exon (NM_010601, exon 2 of 15)	1534.0	NM_010601	16512.0	Mm.374793	NM_010601	ENSMUSG00000037579	Kcnh3	AU019351|C030044P22Rik|Elk2|Kv12.2|Melk2	potassium voltage-gated channel, subfamily H (eag-related), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-109752681-2	chr7	109752587	109752787	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_020050)	promoter-TSS (NM_020050)	-424.0	NM_020050	56786.0	Mm.240668	NM_020050	ENSMUSG00000031021	Tmem9b	2310004K06Rik|AW539847|D7H11orf15|ICRFP703B1614Q5.3	TMEM9 domain family, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-30976813-2	chr13	30976713	30976913	+	654.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2766.0	NM_025588	66482.0	Mm.293510	NM_025588	ENSMUSG00000021357	Exoc2	2410030I24Rik|AI648199|Sec5|Sec5l1	exocyst complex component 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-35983979-4	chr16	35983880	35984080	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008465, intron 1 of 13)	CpG	617.0	NM_008465	16646.0	Mm.3991	NM_008465	ENSMUSG00000022905	Kpna1	AW494490|IPOA5|NPI1|Rch2|mSRP1	karyopherin (importin) alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6854900-2	chr19	6854800	6855000	+	583.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081291, intron 10 of 26)	intron (NM_001081291, intron 10 of 26)	3311.0	NM_001081291	78317.0	Mm.329596	NM_198008	ENSMUSG00000047810	Ccdc88b	2610041P08Rik|Ccdc88	coiled-coil domain containing 88B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85304912-4	chr12	85304810	85305010	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145138, intron 20 of 21)	intron (NM_145138, intron 20 of 21)	16319.0	NM_172414	72350.0	Mm.158810	NM_172414	ENSMUSG00000045064	Zc2hc1c	2810002I04Rik|AV046379|Fam164c	zinc finger, C2HC-type containing 1C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-142621351-4	chr3	142621257	142621457	+	984.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010260, intron 1 of 10)	Lx8|LINE|L1	694.0	NM_010260	14469.0	Mm.24038	NM_010260	ENSMUSG00000028270	Gbp2	-	guanylate binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-89909382-2	chr9	89909282	89909482	+	618.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039655)	promoter-TSS (NM_001039655)	-393.0	NM_001357744	19417.0	Mm.44561	NM_011245	ENSMUSG00000032356	Rasgrf1	AI844718|CDC25|CDC25Mm|Gnrp|Grf1|Grfbeta|P190-A|Ras-GRF1|p190|p190RhoGEF	RAS protein-specific guanine nucleotide-releasing factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-10247325-2	chr3	10247225	10247425	+	865.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357159, intron 4 of 4)	intron (NM_001357159, intron 4 of 4)	6900.0	NM_001357161	75497.0	Mm.47052	NM_029310	ENSMUSG00000027530	Fabp12	1700008G05Rik	fatty acid binding protein 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-34519587-4	chr5	34519463	34519663	+	948.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5584.0	NM_139064	231130.0	Mm.28615	NM_139064	ENSMUSG00000059866	Tnip2	1810020H16Rik|ABIN-2|AI428870	TNFAIP3 interacting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106745219-2	chr11	106745119	106745319	+	699.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-6007.0	NM_001271375	380732.0	Mm.343952	NM_001033435	ENSMUSG00000040528	Milr1	Allergin-1|Gm885|Mca32	mast cell immunoglobulin like receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-32818361-4	chr12	32818255	32818455	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-1980.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-33146205-3	chr14	33145963	33146163	+	805.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146022, intron 8 of 58)	intron (NM_001146022, intron 8 of 58)	39003.0	NM_001146022	545030.0	Mm.318345	NM_001146022	ENSMUSG00000051506	Wdfy4	Gm18810	WD repeat and FYVE domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-58556279-4	chr16	58556191	58556391	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32038.0	NM_001357434	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55100063-2	chr19	55099963	55100163	+	615.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008149)	promoter-TSS (NM_008149)	-586.0	NM_008149	14732.0	Mm.210196	NM_008149	ENSMUSG00000024978	Gpam	GPAT|GPAT-1|GPAT1|P90	glycerol-3-phosphate acyltransferase, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-105300867-4	chr13	105300762	105300962	+	995.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6377.0	NM_001360891	71816.0	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129384755-2	chr2	129384633	129384833	+	790.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13594.0	NM_008361	16176.0	Mm.222830	NM_008361	ENSMUSG00000027398	Il1b	IL-1beta|Il-1b	interleukin 1 beta	protein-coding	1.13264434598796	1.26645126577397	0.843334585838246	1.02737367722805	1.38406307397222	1.08895558409063	1.73095008765771	1.84226834684054	1.94458308553155	0.129646381036642	0.564267453329252
Merged-chr2-146959504-5	chr2	146959438	146959638	+	971.213318	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033298, intron 12 of 13)	intron (NM_001033298, intron 12 of 13)	-53461.0	NM_001356403	24128.0	Mm.3065	NM_011917	ENSMUSG00000027433	Xrn2	-	5'-3' exoribonuclease 2	protein-coding	0.897738060375133	0.329188005105829	1.11932431905184	0.31541014257039	0.90987458941327	0.33093069423491	0.32314434753476	0.493531305146454	-0.983434136222842	0.600788085792839	1
Merged-chr3-27643234-3	chr3	27643124	27643324	+	989.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173182, intron 1 of 25)	intron (NM_173182, intron 1 of 25)	-58229.0	NR_037275	100526525.0		NR_037275	ENSMUSG00000092695	Mir3092	mir-3092|mmu-mir-3092	microRNA 3092	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-84919954-3	chr10	84919854	84920054	+	766.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013441, intron 1 of 8)	intron (NM_001013441, intron 1 of 8)	2341.0	NM_183172	237422.0	Mm.18936	NM_183172	ENSMUSG00000035620	Ric8b	BC051080|Ric-8|Ric-8b	RIC8 guanine nucleotide exchange factor B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-40765128-3	chr9	40765045	40765245	+	990.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133733, intron 2 of 6)	B2_Mm2|SINE|B2	-36128.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	2.31454144345572	2.03126834203371	1.606836988059	3.32130727801465	1.48483105300301	1.68092752383978	1.80966583192407	1.08640092209936	-2.36482766095214	0.0215152873850884	0.187966323820114
Merged-chr2-43806144-4	chr2	43806022	43806222	+	780.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301831, intron 2 of 14)	intron (NM_001301831, intron 2 of 14)	57298.0	NM_001301831	76117.0	Mm.217350	NM_153820	ENSMUSG00000049744	Arhgap15	5830480G12Rik	Rho GTPase activating protein 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-46275506-4	chr11	46275408	46275608	+	882.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252459, intron 8 of 30)	intron (NM_001252459, intron 8 of 30)	36850.0	NM_001252460	76884.0	Mm.154358	NM_133769	ENSMUSG00000020340	Cyfip2	1500004I01Rik|6430511D02Rik|AA930218|AU022376|Pir121|mKIAA1168	cytoplasmic FMR1 interacting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-108691669-1	chr4	108691569	108691769	+	642.0	f0_balb.idr	exon (NM_183300, exon 4 of 16)	exon (NM_183300, exon 4 of 16)	32243.0	NM_183300	230597.0	Mm.196776	NM_183300	ENSMUSG00000034557	Zfyve9	Madhip|NSP|SARA|SMADIP	zinc finger, FYVE domain containing 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-36831653-2	chr12	36831553	36831753	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15448.0	NR_039558	100628578.0		NR_039558	ENSMUSG00000092998	Mir5099	mmu-mir-5099|mu-mir-5099	microRNA 5099	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-67822258-4	chr5	67822157	67822357	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038999, intron 1 of 36)	intron (NM_001038999, intron 1 of 36)	25174.0	NM_009727	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-51719210-4	chr3	51719100	51719300	+	941.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 2 of 4)	intron (NM_001004176, intron 2 of 4)	58021.0	NM_001310482	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-46164749-2	chr17	46164649	46164849	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_019581, exon 4 of 12)	exon (NM_019581, exon 4 of 12)	2685.0	NM_001357745	56055.0	Mm.22147	NM_019581	ENSMUSG00000023952	Gtpbp2	nmf205	GTP binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-121841475-2	chr8	121841375	121841575	+	562.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-11906.0	NM_145605	234825.0	Mm.209329	NM_145605	ENSMUSG00000040263	Klhdc4	AA408426|AV352552|BC012312|G430025P05Rik	kelch domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-58244317-1	chr15	58244217	58244417	+	620.0	f0_balb.idr	Intergenic	MLT1A1|LTR|ERVL-MaLR	-29425.0	NM_026346	67731.0	Mm.25683	NM_026346	ENSMUSG00000022358	Fbxo32	4833442G10Rik|AI430017|ATROGIN1|Gm20361|MAFbx	F-box protein 32	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-82771441-4	chr1	82771343	82771543	+	859.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2987.0	NM_025453	66261.0	Mm.46325	NM_025453	ENSMUSG00000026149	Tm4sf20	1810018L02Rik	transmembrane 4 L six family member 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-29273413-2	chr6	29273313	29273513	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023516, intron 1 of 1)	intron (NM_023516, intron 1 of 1)	787.0	NM_023516	69573.0	Mm.45161	NM_023516	ENSMUSG00000043421	Hilpda	2310016C08Rik|AW049004|Hig2	hypoxia inducible lipid droplet associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-54863631-4	chr14	54863547	54863747	+	978.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177705, intron 1 of 1)	intron (NM_001177705, intron 1 of 1)	511.0	NM_001177705	239099.0	Mm.280994	NM_183174	ENSMUSG00000057156	Homez	mKIAA1443	homeodomain leucine zipper-encoding gene	protein-coding	2.44375708251817	2.9440968932235	2.84554674896266	2.67510163478398	2.1183986321174	1.51243517596553	2.29661196430626	3.08452311700216	-0.696116377335379	0.400974273084191	0.886092091441085
Merged-chr8-111731508-3	chr8	111731409	111731609	+	607.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009954, intron 1 of 6)	intron (NM_009954, intron 1 of 6)	627.0	NM_001198839	12927.0	Mm.3758	NM_009954	ENSMUSG00000031955	Bcar1	AI385681|Cas|Crkas	breast cancer anti-estrogen resistance 1	protein-coding	-0.106664663682715	0.529946612152065	0.479595828851472	-0.0999110704615548	-0.105659289711611	-0.0894021567034549	0.242519553537533	-0.0992010079331189	-2.03457783542477	0.384293030177638	1
Merged-chr2-76676500-2	chr2	76676400	76676600	+	920.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_031256, intron 1 of 7)	intron (NM_031256, intron 1 of 7)	1185.0	NM_031256	83435.0	Mm.41636	NM_031256	ENSMUSG00000002733	Plekha3	FAPP1	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101078923-4	chr15	101078873	101079073	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-24574.0	NM_001214911	668225.0	Mm.385011	NM_001214911	ENSMUSG00000095440	Fignl2	EG668225	fidgetin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-71988290-4	chr1	71988183	71988383	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040454, intron 1 of 2)	intron (NR_040454, intron 1 of 2)	16912.0	NR_040454	71134.0	Mm.370574	NR_040454	ENSMUSG00000101848	4933417E11Rik	-	RIKEN cDNA 4933417E11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-57353532-1	chr18	57353432	57353632	+	550.0	f1_balb.idr	Intergenic	Intergenic	-1201.0	NM_028447	73137.0	Mm.29889	NM_028447	ENSMUSG00000024594	Prrc1	1190002C06Rik|2310058D16Rik|3110038B19Rik|9430085A19Rik	proline-rich coiled-coil 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-38713557-2	chr15	38713457	38713657	+	928.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_131206)	TTS (NR_131206)	14959.0	NR_131206	105463124.0	Mm.432448	NR_131206	ENSMUSG00000115620	Gm45924	Borg	predicted gene, 45924	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141506563-4	chr4	141506459	141506659	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347235, intron 3 of 14)	intron (NM_001347235, intron 3 of 14)	32038.0	NM_001347235	56381.0	Mm.299906	NM_019763	ENSMUSG00000040761	Spen	Mint|mKIAA0929	spen family transcription repressor	protein-coding	6.54766032886555	6.43246193218072	6.09586154294281	6.85377378590133	6.54388087575088	5.62630057869897	5.98836640532125	6.54196482395117	-0.295761174856292	0.23863937254129	0.73528381914494
Merged-chr4-63548699-4	chr4	63548594	63548794	+	893.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024173, intron 2 of 2)	intron (NM_024173, intron 2 of 2)	3929.0	NM_024173	66290.0	Mm.371615	NM_024173	ENSMUSG00000039105	Atp6v1g1	1810024D14Rik|AA960677|ATP6J|Atp6g1|VAG1|Vma10	ATPase, H+ transporting, lysosomal V1 subunit G1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90451163-2	chr2	90451063	90451263	+	685.599976	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 14 of 23)	(TG)n|Simple_repeat|Simple_repeat	28011.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-41888581-4	chr10	41888484	41888684	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013370, intron 1 of 9)	intron (NM_001013370, intron 1 of 9)	1145.0	NM_001013370	140742.0	Mm.139418	NM_001013370	ENSMUSG00000038332	Sesn1	1110002G11Rik|AU044290|Pa26|Sest1	sestrin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-165614980-4	chr1	165614868	165615068	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083897, intron 1 of 5)	intron (NM_001083897, intron 1 of 5)	19573.0	NM_001001880	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-16256369-4	chr14	16256262	16256462	+	919.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021504, intron 2 of 11)	MTEb|LTR|ERVL-MaLR	-6554.0	NM_027695	71147.0	Mm.197960	NM_027695	ENSMUSG00000021786	Oxsm	4933425A18Rik|C80494	3-oxoacyl-ACP synthase, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-53463697-4	chr3	53463592	53463792	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172501)	promoter-TSS (NM_172501)	-125.0	NM_173382	212127.0	Mm.491292	NM_173382	ENSMUSG00000049504	Proser1	2810046L04Rik|9330161F11	proline and serine rich 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75738095-4	chr11	75737982	75738182	+	922.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009536, intron 1 of 5)	intron (NM_009536, intron 1 of 5)	5195.0	NM_009536	22627.0	Mm.234700	NM_009536	ENSMUSG00000020849	Ywhae	AU019196	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide	protein-coding	1.79047599779706	1.99570317296663	2.0503461953114	1.43186464089468	1.91165988563577	2.00992998772437	2.17394543350978	1.75904423851786	0.38646842101926	0.6895456276249	0.996533206832645
Merged-chr16-18348801-3	chr16	18348696	18348896	+	848.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359108)	promoter-TSS (NM_001359108)	614.0	NM_001272029	11877.0	Mm.293599	NM_033474	ENSMUSG00000000325	Arvcf	-	armadillo repeat gene deleted in velocardiofacial syndrome	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-116425101-4	chr3	116425009	116425209	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MamSINE1|SINE|tRNA	-1077.0	NM_001173553	229776.0	Mm.17647	NM_001080818	ENSMUSG00000033502	Cdc14a	A830059A17Rik|CDC14A2|CDC14a1|Cdc14	CDC14 cell division cycle 14A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-75085484-2	chr8	75085384	75085584	+	882.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-8134.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-6963160-4	chr17	6963063	6963263	+	928.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2007.0	NM_147155	380608.0	Mm.371734	NM_147155	ENSMUSG00000052031	Tagap1	2610315E15Rik|AA415005|FKSG15	T cell activation GTPase activating protein 1	protein-coding	3.37271850480058	2.20193938123957	2.86446031331154	2.98077488377666	3.08945364138951	2.4146386856065	2.99236208029959	3.44238008430087	0.194448062893132	0.777166968266184	0.998431161219273
Merged-chr1-86531951-2	chr1	86531851	86532051	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5394.0	NM_001360830	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-50857533-1	chr9	50857433	50857633	+	570.0	f1_balb.idr	intron (NM_001286553, intron 1 of 16)	intron (NM_001286553, intron 1 of 16)	609.0	NM_001286553	73699.0	Mm.7726	NM_028614	ENSMUSG00000032058	Ppp2r1b	2410091N08Rik|AI790395	protein phosphatase 2, regulatory subunit A, beta	protein-coding	-0.595037262513446	-0.080186092702184	-0.587252263421021	-0.590178633130825	-0.594314464321657	-0.582604970052336	0.00382103245022775	-0.58966738236934	0.304225317690954	0.914656096863809	1
Merged-chr5-122159643-1	chr5	122159543	122159743	+	577.0	f1_c57bl6.idr	intron (NM_013636, intron 1 of 6)	B1_Mus1|SINE|Alu	1364.0	NM_013636	19047.0	Mm.280784	NM_013636	ENSMUSG00000004455	Ppp1cc	PP-1G|PP1|dis2m1	protein phosphatase 1, catalytic subunit, gamma isoform	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191074029-2	chr1	191073929	191074129	+	926.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_198654, intron 4 of 5)	intron (NM_198654, intron 4 of 5)	11008.0	NM_198654	381318.0	Mm.32504	NM_198654	ENSMUSG00000062510	Nsl1	4833432M17Rik|AI451597|Gm105|Gm984	NSL1, MIS12 kinetochore complex component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-6623660-1	chr6	6623560	6623760	+	599.0	f1_c57bl6.idr	Intergenic	Intergenic	-45002.0	NM_009169	20422.0	Mm.2469	NM_009169	ENSMUSG00000042541	Sem1	DSS1|Shfdg1|Shfg|Shfm1	SEM1, 26S proteasome complex subunit	protein-coding	0.352387891925804	1.03157653307301	0.85792182273699	0.36329762794501	0.354018361890202	1.04347950865442	0.868210266942921	0.36443892953186	0.0400273943291098	0.982692899925454	1
Merged-chr2-94436237-3	chr2	94436133	94436333	+	830.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007466, intron 1 of 13)	(CA)n|Simple_repeat|Simple_repeat	1953.0	NM_007466	11800.0	Mm.181824	NM_007466	ENSMUSG00000027193	Api5	AAC-11|AI196452|API-5	apoptosis inhibitor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-46287008-4	chr11	46286918	46287118	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252459, intron 3 of 30)	intron (NM_001252459, intron 3 of 30)	25340.0	NM_001252460	76884.0	Mm.154358	NM_133769	ENSMUSG00000020340	Cyfip2	1500004I01Rik|6430511D02Rik|AA930218|AU022376|Pir121|mKIAA1168	cytoplasmic FMR1 interacting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-83160708-2	chr15	83160608	83160808	+	796.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029787, intron 5 of 8)	intron (NM_029787, intron 5 of 8)	11063.0	NR_004432	104307.0	Mm.471434	NR_004432	ENSMUSG00000065176	Rnu12	-	RNA U12, small nuclear	snRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-125437258-2	chr1	125437158	125437358	+	777.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-1531.0	NM_001205385	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141273975-2	chr4	141273875	141274075	+	818.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-4464.0	NR_151527	100503810.0		NR_151527	ENSMUSG00000085395	Gm13056	-	predicted gene 13056	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-55868487-4	chr7	55868393	55868593	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164661, intron 2 of 31)	Lx10|LINE|L1	26422.0	NM_001164661	20430.0	Mm.37249	NM_011370	ENSMUSG00000030447	Cyfip1	E030028J09Rik|P140SRA-1|P140sra1|Shyc|Sra-1|Sra1|l(7)1Rl|l71Rl|l7Rl1|mKIAA0068|pl-1	cytoplasmic FMR1 interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35914686-2	chr17	35914569	35914769	+	963.2666630000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361455, intron 2 of 5)	intron (NM_001361455, intron 2 of 5)	1771.0	NM_001361455	66973.0	Mm.29484	NM_025878	ENSMUSG00000024436	Mrps18b	2400002C15Rik|MRP-S18-2|S18mt-b	mitochondrial ribosomal protein S18B	protein-coding	0.750981683445857	0.81359394302915	1.54880773879911	2.0017991895893	2.10517552676796	1.76328174141765	0.798241537343777	0.780877174086454	0.321367305867093	0.828408035006571	0.998431161219273
Merged-chr13-9354018-4	chr13	9353916	9354116	+	914.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081426, intron 1 of 36)	intron (NM_001081426, intron 1 of 36)	77491.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-89454005-3	chr10	89453894	89454094	+	750.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001163504)	TTS (NM_001163504)	-10027.0	NM_001033331	237436.0	Mm.11982	NM_001033331	ENSMUSG00000074802	Gas2l3	8430435B07Rik|Gm240	growth arrest-specific 2 like 3	protein-coding	2.48610278346925	3.00453128941417	1.4695962374238	2.62442834893101	2.85751914458407	3.35543204806396	2.92559361622375	1.91911927288969	0.672464251440098	0.417417524120595	0.897409723507739
Merged-chr11-117200898-4	chr11	117200781	117200981	+	980.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113486, intron 1 of 11)	intron (NM_001113486, intron 1 of 11)	1220.0	NM_001113486	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-70091950-4	chr2	70091840	70092040	+	943.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177376, intron 2 of 34)	RLTR14|LTR|ERV1	52814.0	NM_177376	329421.0	Mm.99648	NM_177376	ENSMUSG00000042064	Myo3b	A430065P19Rik	myosin IIIB	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-73180852-4	chr14	73180757	73180957	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134083, intron 14 of 14)	intron (NM_134083, intron 14 of 14)	25994.0	NR_030459	751541.0		NR_030459	ENSMUSG00000076121	Mir687	Mirn687|mir-687|mmu-mir-687	microRNA 687	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-119807951-4	chr8	119807839	119808039	+	837.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29523.0	NM_028883	74347.0	Mm.358759	NM_028883	ENSMUSG00000034105	Tldc1	4632415K11Rik|Kiaa1609	TBC/LysM associated domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46979124-4	chr19	46979010	46979210	+	956.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164363, intron 1 of 17)	RSINE1|SINE|B4	-9543.0	NM_001164365	76952.0	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-80152141-2	chr12	80152041	80152241	+	567.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19297.0	NR_033514	69548.0	Mm.269712	NR_033514		2310015A10Rik	5330419I17Rik	RIKEN cDNA 2310015A10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-116047188-3	chr3	116047088	116047288	+	726.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38891.0	NM_001163514	58193.0	Mm.41739	NM_021388	ENSMUSG00000027963	Extl2	3000001D04Rik|AW146439	exostoses (multiple)-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-8094809-2	chr14	8094710	8094910	+	843.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-3401.0	NM_145458	218699.0	Mm.29515	NM_145458	ENSMUSG00000033885	Pxk	C230080L11Rik|D14Ertd813e|Monaka|Slob	PX domain containing serine/threonine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-40583943-4	chr12	40583844	40584044	+	928.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	ORR1D2|LTR|ERVL-MaLR	137891.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180330405-4	chr1	180330302	180330502	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081175)	promoter-TSS (NM_001081175)	-74.0	NM_001081175	320404.0	Mm.132535	NM_001081175	ENSMUSG00000038855	Itpkb	1110033J02Rik|E130307H12Rik	inositol 1,4,5-trisphosphate 3-kinase B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-75004675-1	chr18	75004575	75004775	+	693.0	f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-1164.0	NM_001358306	407819.0	Mm.29866	NM_001001181	ENSMUSG00000036299	BC031181	-	cDNA sequence BC031181	protein-coding	1.10343474458574	0.421242601377604	1.33603845148673	0.404638736913154	1.02899764008015	0.423332679277323	0.615833555921782	0.405913588702364	-1.19346068424943	0.507072918821497	1
Merged-chr16-18252169-2	chr16	18252069	18252269	+	560.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001080999, exon 8 of 12)	exon (NM_001080999, exon 8 of 12)	3286.0	NM_001081000	15547.0	Mm.271798	NM_008307	ENSMUSG00000022721	Trmt2a	Htf9c	TRM2 tRNA methyltransferase 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-86574108-2	chr11	86574008	86574208	+	893.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	10050.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-53474041-2	chr17	53473941	53474141	+	881.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-5193.0	NM_025887	271457.0	Mm.329123	NM_025887	ENSMUSG00000017831	Rab5a	2410015H04Rik|AI663973|AU021172|nnyRab5a	RAB5A, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-128176971-2	chr7	128176871	128177071	+	847.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001029872, intron 2 of 30)	intron (NM_001029872, intron 2 of 30)	3025.0	NM_001029872	381924.0	Mm.334257	NM_001029872	ENSMUSG00000070369	Itgad	Cd11d	integrin, alpha D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-9648164-2	chr4	9648025	9648225	+	850.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290367, intron 1 of 22)	(TTTA)n|Simple_repeat|Simple_repeat	-4408.0	NM_001177852	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	0.216777963685579	0.936244219897483	0.235336704592981	0.228419833026105	0.218522849702548	0.94853886595142	1.10803489995968	0.22963324310455	1.2986191062966	0.519454209986793	1
Merged-chr2-171002548-2	chr2	171002448	171002648	+	729.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	270741.0	NM_001163686	76829.0	Mm.41633	NM_029761	ENSMUSG00000027560	Dok5	2700055C10Rik	docking protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-52019033-4	chr14	52018941	52019141	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033805, intron 6 of 6)	intron (NM_001033805, intron 6 of 6)	672.0	NM_001253694	69890.0	Mm.475652	NM_027248	ENSMUSG00000049295	Zfp219	2010302A17Rik|Znf219	zinc finger protein 219	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-149086294-4	chr3	149086189	149086389	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-131654.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-31413092-3	chr6	31412985	31413185	+	868.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013791, intron 1 of 17)	intron (NM_013791, intron 1 of 17)	14257.0	NM_013791	27418.0	Mm.238038	NM_013791	ENSMUSG00000025609	Mkln1	A130067F06Rik|AU015903|BB154892	muskelin 1, intracellular mediator containing kelch motifs	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53412678-2	chr4	53412578	53412778	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-27735.0	NM_001159633	100434.0	Mm.482207	NM_133891	ENSMUSG00000028412	Slc44a1	2210409B22Rik|4833416H08Rik|AW547365|CHTL1|CTL1|Cdw92	solute carrier family 44, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115608565-2	chr11	115608465	115608665	+	586.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_025305)	TTS (NM_025305)	3938.0	NM_027162	69674.0	Mm.390387	NM_027162	ENSMUSG00000020743	Mif4gd	1110014L05Rik|2310075G12Rik	MIF4G domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-64129353-4	chr13	64129255	64129455	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001001321)	promoter-TSS (NM_001001321)	-25.0	NM_001001321	70484.0	Mm.133731	NM_001001321	ENSMUSG00000033114	Slc35d2	5730408I21Rik|SQV7L|UGTrel8|hfrc|mUGTrel8	solute carrier family 35, member D2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-3332627-4	chr2	3332531	3332731	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001013376)	promoter-TSS (NM_001013376)	-3.0	NM_001013376	227522.0	Mm.293948	NM_001013376	ENSMUSG00000049950	Rpp38	C330006A15Rik	ribonuclease P/MRP 38 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-53334969-2	chr19	53334869	53335069	+	576.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001008543, intron 2 of 5)	intron (NM_001008543, intron 2 of 5)	4561.0	NM_001008543	17859.0	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36162836-4	chr1	36162718	36162918	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198899, intron 29 of 40)	MTEb|LTR|ERVL-MaLR	-18505.0	NR_105862	102465540.0		NR_105862	ENSMUSG00000098752	Mir6897	Gm27652|mmu-mir-6897	microRNA 6897	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-10993162-4	chr16	10993056	10993256	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019980)	promoter-TSS (NM_019980)	-35.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3508586-3	chr4	3508483	3508683	+	870.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28507.0	NR_037306	100499523.0		NR_037306	ENSMUSG00000094253	Mir3471-2	mmu-mir-3471-2	microRNA 3471-2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-23678351-2	chr11	23678251	23678451	+	613.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033654, intron 4 of 17)	intron (NM_001033654, intron 4 of 17)	12375.0	NM_028304	74467.0	Mm.29536	NM_028304	ENSMUSG00000020280	Pus10	2810013G11Rik|4933435A13Rik|AU014648|C77560|Ccdc139	pseudouridylate synthase 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-88252831-3	chr7	88252752	88252952	+	633.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-25233.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-109354117-1	chr3	109354017	109354217	+	546.0	f0_balb.idr	intron (NM_020505, intron 1 of 26)	intron (NM_020505, intron 1 of 26)	13434.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	0.059837374722921	-0.246361727375729	-0.249458247681985	-0.114332944863626	-0.255119390216834	-0.24565833741997	0.143628462980335	0.00882521695351669	0.59401993732817	0.798552715033805	1
Merged-chr10-77607469-4	chr10	77607322	77607522	+	995.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301671, intron 1 of 3)	B1_Mur4|SINE|Alu	824.0	NM_001301671	20610.0	Mm.24433	NM_019929	ENSMUSG00000020265	Sumo3	2810014B19Rik|D10Ertd345e|SMT3A|SUMO-3|Smt3h1	small ubiquitin-like modifier 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-104955441-4	chr5	104955340	104955540	+	762.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030239, intron 10 of 15)	intron (NM_030239, intron 10 of 15)	27277.0	NM_030239	27405.0	Mm.389663	NM_030239	ENSMUSG00000029299	Abcg3	Abcp2|Mxr2	ATP binding cassette subfamily G member 3	protein-coding	1.47287047009731	1.58401269449606	0.7723995981217	1.10914584316657	0.918427566468891	0.787810158869126	1.53497322141002	1.25199217966445	-0.463350809859602	0.738573919712351	0.998431161219273
Merged-chr13-63642760-4	chr13	63642662	63642862	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69302.0	NM_001328514	19206.0	Mm.228798	NM_008957	ENSMUSG00000021466	Ptch1	A230106A15Rik|Ptc|Ptc1|Ptch|mes|wig	patched 1	protein-coding	2.96175853063877	1.72701579575436	3.33087005452999	2.94589886555328	1.7069761260954	1.17753563794994	1.43404013733905	1.09998206556988	-3.68889606818593	0.000591624024711051	0.012843736517159
Merged-chr1-180764078-4	chr1	180763987	180764187	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38044.0	NM_133225	170760.0	Mm.272981	NM_133225	ENSMUSG00000026499	Acbd3	60kDa|8430407O11Rik|D1Ertd10e|GCP60|GOLPH1|Gocap1|Pap7	acyl-Coenzyme A binding domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-26911772-2	chr2	26911672	26911872	+	716.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_013721, intron 3 of 7)	intron (NM_013721, intron 3 of 7)	965.0	NM_013721	27176.0	Mm.328601	NM_013721	ENSMUSG00000062647	Rpl7a	Surf3	ribosomal protein L7A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91480601-2	chr2	91480501	91480701	+	780.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172668, intron 14 of 37)	intron (NM_172668, intron 14 of 37)	23070.0	NM_001145857	228357.0	Mm.275149	NM_172668	ENSMUSG00000027253	Lrp4	6430526J12Rik|D230026E03|Megf7|mdig	low density lipoprotein receptor-related protein 4	protein-coding	-0.92093142172544	-0.7119420839788	-0.914675128543814	-0.917027610972179	-0.254065671713894	-0.903274750459549	-0.914002518252816	-0.91661668206149	2.05299597750706	0.501694870387987	1
Merged-chr7-28339514-4	chr7	28339412	28339612	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013676)	promoter-TSS (NM_013676)	-793.0	NM_013676	20924.0	Mm.285906	NM_013676	ENSMUSG00000003435	Supt5	AL033283|AL033321|AU019549|Spt5|Supt5h	suppressor of Ty 5	protein-coding	1.24323126373796	1.54238621469383	0.724001356666553	0.714266441225152	1.25514715300505	1.55639419855814	0.72676266547148	1.20839945792711	0.438043429978251	0.767359480559095	0.998431161219273
Merged-chr14-69734801-2	chr14	69734701	69734901	+	552.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_130157, intron 1 of 2)	intron (NR_130157, intron 1 of 2)	1967.0	NR_130157	75016.0	Mm.394574	NR_130157	ENSMUSG00000097284	4930480K23Rik	-	RIKEN cDNA 4930480K23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3647752-4	chr4	3647631	3647831	+	914.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8775.0	NR_040643	70143.0	Mm.417835	NR_040643	ENSMUSG00000085394	2210414B05Rik	-	RIKEN cDNA 2210414B05 gene	ncRNA	0.916051271317814	1.22237780549464	1.90333408980822	1.73834968318561	1.28118253087533	1.23029084534492	2.27254764470439	1.49669317177431	0.440538958816625	0.715266331008824	0.998431161219273
Merged-chr2-128793281-2	chr2	128793181	128793381	+	605.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 17 of 18)	intron (NM_008587, intron 17 of 18)	-25022.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-31033927-2	chr2	31033827	31034027	+	672.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355105, intron 14 of 15)	intron (NM_001355105, intron 14 of 15)	51648.0	NM_028846	74270.0	Mm.346654	NM_028846	ENSMUSG00000026854	Usp20	1700055M05Rik|AI467231|Vdu2	ubiquitin specific peptidase 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-100382667-3	chr9	100382567	100382767	+	853.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	103806.0	NM_001033543	213208.0	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	0.80772965239682	0.877667432292984	0.442747908498293	0.425495513375576	0.257063351766105	0.276553957693171	0.270207232096623	0.68860566978699	-1.85861627564131	0.317098586420369	1
Merged-chr15-29417339-2	chr15	29417239	29417439	+	941.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus4|LINE|L1	296065.0	NR_039542	100628607.0		NR_039542	ENSMUSG00000092639	Mir3964	mmu-mir-3964|mu-mir-3964	microRNA 3964	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-122296989-2	chr3	122296889	122297089	+	575.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-3286.0	NR_030439	791077.0		NR_030439	ENSMUSG00000076456	Mir760	Mirn760|mir-760|mmu-mir-760	microRNA 760	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-111792287-1	chr13	111792187	111792387	+	636.0	f0_balb.idr	intron (NM_011945, intron 1 of 19)	intron (NM_011945, intron 1 of 19)	16706.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-31151047-4	chr7	31150948	31151148	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_153431, exon 1 of 19)	non-coding (NR_153431, exon 1 of 19)	123.0	NM_027898	52857.0	Mm.27366	NM_027898	ENSMUSG00000001248	Gramd1a	1300003M23Rik|AI415002|AW547240|D7Bwg0611e	GRAM domain containing 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-109406531-3	chr13	109406435	109406635	+	987.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011056, intron 3 of 16)	intron (NM_011056, intron 3 of 16)	81791.0	NR_030644	100124489.0		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-157562578-2	chr2	157562478	157562678	+	573.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001291128)	TTS (NM_001291128)	2500.0	NM_180960	18111.0	Mm.34330	NM_010923	ENSMUSG00000067786	Nnat	5730414I02Rik|AW107673|Peg5	neuronatin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-63719729-2	chr9	63719629	63719829	+	952.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016769, intron 1 of 8)	MIRc|SINE|MIR	38265.0	NM_016769	17127.0	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-124090663-4	chr9	124090565	124090765	+	839.770874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11518.0	NM_009915	12772.0	Mm.6272	NM_009915	ENSMUSG00000049103	Ccr2	Cc-ckr-2|Ccr2a|Ccr2b|Ckr2|Ckr2a|Ckr2b|Cmkbr2|mJe-r	chemokine (C-C motif) receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-92245691-3	chr5	92245585	92245785	+	809.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011148, intron 7 of 16)	intron (NM_011148, intron 7 of 16)	10593.0	NM_011148	19023.0	Mm.87155	NM_011148	ENSMUSG00000029410	Ppef2	-	protein phosphatase, EF hand calcium-binding domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-23985205-4	chr17	23985102	23985302	+	957.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-9972.0	NM_013921	30943.0	Mm.142568	NM_013921	ENSMUSG00000024124	Prss30	2010015P21Rik|Disp|Disp1|Tmprss8	protease, serine 30	protein-coding	2.75645711695592	2.9902818930342	4.3653285830967	3.02814165583174	2.53419206334533	3.92817425197558	3.73848578995811	3.04457760430541	-0.0742932345635443	0.910314460536486	0.998431161219273
Merged-chr9-110870461-1	chr9	110870361	110870561	+	605.0	f1_balb.idr	intron (NM_146260, intron 4 of 5)	intron (NM_146260, intron 4 of 5)	9622.0	NM_146260	20776.0	Mm.390229	NM_146260	ENSMUSG00000049555	Tmie	5131400L21Rik|Mm.87012|sr	transmembrane inner ear	protein-coding	-0.0192302850399962	0.0246536369617639	0.0108470668148224	0.254123827517797	0.564440434685507	0.0276964406011334	1.85628987590387	0.00177894859071354	4.04617955098399	0.0353948805469589	0.266422795045696
Merged-chr9-104001047-2	chr9	104000947	104001147	+	737.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16A|LTR|ERVL	-1497.0	NM_028721	74025.0	Mm.479273	NM_028721	ENSMUSG00000032558	Nphp3	3632410F03Rik|AI550417|C230078J01|D330020E01Rik|pcy	nephronophthisis 3 (adolescent)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-103304033-2	chr15	103303986	103304186	+	883.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6352.0	NM_030720	80910.0	Mm.160369	NM_030720	ENSMUSG00000063234	Gpr84	EX33	G protein-coupled receptor 84	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-21403575-5	chr16	21403428	21403628	+	894.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-19590.0	NM_001285893	209018.0	Mm.235683	NM_145948	ENSMUSG00000033653	Vps8	AI315068|AU040738|mKIAA0804	VPS8 CORVET complex subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-68283271-4	chr10	68283161	68283361	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4535.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	4.3135013185909	4.26568256387424	4.19040797211977	4.56383400906903	4.07124805908207	4.01201441736874	4.09565863053608	4.26459199884939	-0.302385619094568	0.452042035250634	0.918216761671067
Merged-chr4-43043638-1	chr4	43043538	43043738	+	540.0	f1_c57bl6.idr	intron (NR_045567, intron 1 of 7)	intron (NR_045567, intron 1 of 7)	2582.0	NR_045567	230088.0	Mm.260162	NM_172691	ENSMUSG00000036002	Fam214b	B230312A22Rik	family with sequence similarity 214, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117447986-2	chr11	117447886	117448086	+	968.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-26269.0	NR_136918	667423.0	Mm.383716	NR_136918	ENSMUSG00000083705	Gm8624	EG667423|EyeLinc11	ribosomal protein S23 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-53029196-3	chr3	53029032	53029232	+	791.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11909.0	NM_026225	67542.0	Mm.249548	NM_026225	ENSMUSG00000027742	Cog6	4933405E16Rik|AU018618|mKIAA1134	component of oligomeric golgi complex 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-89883772-3	chr13	89883688	89883888	+	843.255554	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028012, intron 7 of 7)	intron (NM_028012, intron 7 of 7)	-141276.0	NM_001134475	13003.0	Mm.158700	NM_019389	ENSMUSG00000021614	Vcan	5430420N07Rik|9430051N09|Cspg2|DPEAAE|NG2|PG-M|PG-M(V0)|PG-M(V1)|hdf	versican	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-112240877-4	chr5	112240776	112240976	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11642.0	NM_001312884	12959.0	Mm.40324	NM_021351	ENSMUSG00000066975	Cryba4	-	crystallin, beta A4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-116424673-2	chr14	116424573	116424773	+	582.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175500, intron 7 of 7)	ORR1A2-int|LTR|ERVL-MaLR	-500624.0	NM_001079844	23888.0	Mm.440025	NM_011821	ENSMUSG00000058571	Gpc6	-	glypican 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-16133555-7	chr19	16133418	16133618	+	966.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008139, intron 1 of 6)	CpG	687.0	NM_008139	14682.0	Mm.439701	NM_008139	ENSMUSG00000024639	Gnaq	1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI	guanine nucleotide binding protein, alpha q polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-88034207-1	chr7	88034107	88034307	+	578.0	f0_balb.idr	intron (NM_001081414, intron 6 of 9)	intron (NM_001081414, intron 6 of 9)	-243878.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-11003331-1	chr8	11003231	11003431	+	593.0	f0_balb.idr	intron (NM_001081212, intron 1 of 1)	intron (NM_001081212, intron 1 of 1)	-4519.0	NR_046017	619321.0	Mm.403007	NR_046017	ENSMUSG00000096938	9530052E02Rik	-	RIKEN cDNA 9530052E02 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-39917678-3	chr1	39917571	39917771	+	819.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252202, intron 2 of 29)	L1MEc|LINE|L1	16758.0	NM_008696	26921.0	Mm.491139	NM_008696	ENSMUSG00000026074	Map4k4	9430080K19Rik|AU043147|AU045934|AW046177|HGK|Nik	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180406509-2	chr1	180406409	180406609	+	591.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081175, intron 2 of 7)	intron (NM_001081175, intron 2 of 7)	-75960.0	NR_003623	277333.0	Mm.389223	NM_199472		Gm5069	EG277333	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-35951245-3	chr1	35951147	35951347	+	904.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-117153.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-39456477-3	chr10	39456388	39456588	+	770.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122893, intron 3 of 13)	intron (NM_001122893, intron 3 of 13)	86689.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-134534191-2	chr4	134534091	134534291	+	762.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029759, intron 1 of 6)	intron (NM_029759, intron 1 of 6)	905.0	NM_001355188	76824.0	Mm.30153	NM_029759	ENSMUSG00000046671	Mtfr1l	2410166I05Rik|AI480750|Fam54b	mitochondrial fission regulator 1-like	protein-coding	0.0569439957200945	-0.0710148061948794	-0.0762122393601871	0.224878591092931	-0.0858943430207928	-0.0698434358401912	0.700767359119072	0.229466218178248	1.60808284396449	0.457469779182894	1
Merged-chr2-174021953-2	chr2	174021853	174022053	+	693.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55098.0	NM_172675	228960.0	Mm.277977	NM_172675	ENSMUSG00000027522	Stx16	4930401D03|5430410K23Rik|6330500A18Rik|AI648908|AW553605|Syn16	syntaxin 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-104595174-3	chr2	104595056	104595256	+	893.7333369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037326, intron 1 of 1)	intron (NM_001037326, intron 1 of 1)	4672.0	NM_001037326	228410.0	Mm.259876	NM_145529	ENSMUSG00000027176	Cstf3	4732468G05Rik|C79532|CstF-77	cleavage stimulation factor, 3' pre-RNA, subunit 3	protein-coding	3.03033378908946	2.96806094209074	3.44333794833033	3.42295115000082	2.87593521852816	2.98988547291164	3.46906038475113	3.43972578879434	-0.0248295457367034	0.966475380845774	0.998431161219273
Merged-chr19-3576996-2	chr19	3576896	3577096	+	818.083374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1247.0	NM_028999	52036.0	Mm.284686	NM_028999	ENSMUSG00000024908	Ppp6r3	4930528G08Rik|9130026N02Rik|D19Bwg1430e|D19Ertd703e|Pp6r3|Ppcs3|Pptcs3|Sapl|Saps3|mKIAA1558	protein phosphatase 6, regulatory subunit 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-17726533-4	chr18	17726452	17726652	+	982.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	-145562.0	NR_045374	75162.0	Mm.60874	NR_045374		4930545E07Rik	-	RIKEN cDNA 4930545E07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-4478694-3	chr7	4478630	4478830	+	931.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001290416, exon 19 of 20)	exon (NM_001290416, exon 19 of 20)	-7846.0	NR_028416	320749.0	Mm.396688	NR_028416		D630041G03Rik	-	RIKEN cDNA D630041G03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-26360077-1	chr15	26359977	26360177	+	543.0	f1_balb.idr	intron (NM_001310774, intron 2 of 2)	intron (NM_001310774, intron 2 of 2)	51029.0	NM_001310774	211147.0	Mm.54257	NM_177597	ENSMUSG00000022269	March11	9630025C22	membrane-associated ring finger (C3HC4) 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-42171273-1	chr19	42171173	42171373	+	693.0	f0_balb.idr	intron (NM_177319, intron 1 of 12)	intron (NM_177319, intron 1 of 12)	706.0	NM_001164531	319740.0	Mm.287359	NM_177319	ENSMUSG00000018820	Zfyve27	2210011N02Rik|9530077C24Rik|AI426636|AI593546|AI835681	zinc finger, FYVE domain containing 27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-98853978-2	chr15	98853878	98854078	+	820.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033276, intron 30 of 54)	intron (NM_001033276, intron 30 of 54)	17227.0	NM_001033276	381022.0	Mm.264889	NM_001033276	ENSMUSG00000048154	Kmt2d	ALR|BC032281|BC058659|C430014K11Rik|KMT2B|Mll2|Mll4	lysine (K)-specific methyltransferase 2D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-29067931-2	chr7	29067831	29068031	+	708.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_009109, intron 57 of 105)	intron (NM_009109, intron 57 of 105)	15763.0	NR_035489	100316710.0		NR_035489	ENSMUSG00000089219	Mir1963	mir-1963|mmu-mir-1963	microRNA 1963	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-78747583-3	chr12	78747502	78747702	+	680.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1345.0	NM_019579	56217.0	Mm.425777	NM_019579	ENSMUSG00000021112	Mpp5	3830420B02Rik|AI255216|AI644496|Pals1	membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-100531136-4	chr3	100531036	100531236	+	920.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER57C2|LTR|ERV1	-41944.0	NM_001142952	74645.0	Mm.226900	NM_001142952	ENSMUSG00000044468	Fam46c	4930431B09Rik|AI449797	family with sequence similarity 46, member C	protein-coding	1.46917086645103	0.851901090471648	1.891186827872	1.44930464804376	1.136962567581	0.855103615186685	1.05351634612762	1.56783246567759	-1.07870356300634	0.417428998681645	0.897409723507739
Merged-chr10-117721611-4	chr10	117721502	117721702	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10844.0	NM_001288586	17246.0	Mm.22670	NM_010786	ENSMUSG00000020184	Mdm2	1700007J15Rik|AA415488|Mdm-2	transformed mouse 3T3 cell double minute 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-48306115-2	chr7	48306015	48306215	+	886.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-82411.0	NM_207539	404240.0	Mm.357942	NM_207539	ENSMUSG00000050870	Mrgprb8	MrgB8	MAS-related GPR, member B8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-155943739-4	chr4	155943614	155943814	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039157)	promoter-TSS (NM_001039157)	-99.0	NM_001039158	140499.0	Mm.371673	NM_021402	ENSMUSG00000023286	Ube2j2	1200007B18Rik|2400008G19Rik|5730472G04Rik|AL022923|NCUBE-2|Ubc6|Ubc6p	ubiquitin-conjugating enzyme E2J 2	protein-coding	6.22277988169534	6.20829205855147	6.61270537694945	5.61202916640679	5.8984466441946	5.90019991244468	6.75402563868283	5.84440459373984	-0.0576225925081391	0.835013018777749	0.998431161219273
Merged-chr19-6292776-2	chr19	6292676	6292876	+	677.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_010119, intron 2 of 4)	intron (NM_010119, intron 2 of 4)	-13681.0	NM_001033342	240505.0	Mm.329622	NM_001033342	ENSMUSG00000024769	Cdc42bpg	BC046418|MRCKgamma	CDC42 binding protein kinase gamma (DMPK-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-44582847-4	chr19	44582745	44582945	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19991.0	NM_176958	319594.0	Mm.145278	NM_176958	ENSMUSG00000036450	Hif1an	2310046M24Rik|A830014H24Rik|FIH|FIH1	hypoxia-inducible factor 1, alpha subunit inhibitor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-112592627-2	chr12	112592527	112592727	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198411, intron 1 of 22)	intron (NM_198411, intron 1 of 22)	3843.0	NM_198411	70435.0	Mm.250193	NM_198411	ENSMUSG00000037679	Inf2	2610204M08Rik|AA589465|AW125550|EG629699	inverted formin, FH2 and WH2 domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-85025675-2	chr6	85025575	85025775	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177077, intron 1 of 21)	ORR1C1|LTR|ERVL-MaLR	43838.0	NM_177077	75914.0	Mm.159621	NM_177077	ENSMUSG00000033769	Exoc6b	4930569O18Rik|G430127E12Rik|Sec15b|Sec15l2|mKIAA0919	exocyst complex component 6B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-95346733-2	chr8	95346617	95346817	+	634.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_133954, exon 7 of 7)	3' UTR (NM_133954, exon 7 of 7)	-5579.0	NM_008609	17388.0	Mm.217116	NM_008609	ENSMUSG00000031790	Mmp15	AI503551|MT-MMP 2|MT2-MMP	matrix metallopeptidase 15	protein-coding	0.683338090593033	0.934471635230671	0.330535087936142	0.621652570687194	0.583748146231722	0.338440354872657	0.78340987928263	0.326430702274095	-0.872883590619486	0.623246434792509	1
Merged-chr12-55416289-4	chr12	55416170	55416370	+	966.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310583, intron 6 of 6)	intron (NM_001310583, intron 6 of 6)	17445.0	NM_011968	26443.0	Mm.30210	NM_011968	ENSMUSG00000021024	Psma6	IOTA	proteasome (prosome, macropain) subunit, alpha type 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-146679862-2	chr1	146679762	146679962	+	553.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357572, intron 3 of 8)	Lx3_Mus|LINE|L1	182175.0	NM_001145807	215378.0	Mm.441817	NM_153539	ENSMUSG00000035131	Brinp3	B830045N13Rik|Fam5c	bone morphogenetic protein/retinoic acid inducible neural specific 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-54747946-2	chr1	54747846	54748046	+	833.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081433, intron 9 of 27)	intron (NM_001081433, intron 9 of 27)	178441.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-43695866-1	chr19	43695766	43695966	+	544.0	f0_c57.idr	intron (NM_053103, intron 3 of 12)	L2c|LINE|L2	6177.0	NM_053103	93685.0	Mm.248237	NM_053103	ENSMUSG00000025192	Entpd7	1810012B13Rik|1810020C02Rik|2810003F23Rik|LALP1|Lysal2	ectonucleoside triphosphate diphosphohydrolase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24536504-1	chr17	24536404	24536604	+	957.0	f1_c57bl6.idr	Intergenic	Intergenic	-2757.0	NM_177375	328778.0	Mm.266033	NM_177375	ENSMUSG00000079657	Rab26	A830020M03Rik	RAB26, member RAS oncogene family	protein-coding	-1.50763005145187	-1.31670893484727	-1.48450067913376	-1.49273687365037	-1.50530255950595	-1.31453611646887	-1.32446577640663	-1.49126259876973	0.882534791298622	0.780536272052228	1
Merged-chr8-124723124-1	chr8	124723024	124723224	+	540.0	f1_c57bl6.idr	intron (NM_026855, intron 1 of 5)	intron (NM_026855, intron 1 of 5)	985.0	NM_026855	68865.0	Mm.22779	NM_026855	ENSMUSG00000031982	Arv1	1110067L22Rik|AI461928|AW121084	ARV1 homolog, fatty acid homeostasis modulator	protein-coding	2.18850460197826	1.88210040353116	2.07796295746548	1.90719819530163	1.83117553699258	1.72976931384062	2.20163980260663	1.63777350437374	-0.435591975144473	0.644896777771875	0.983701068654072
Merged-chr19-6303836-2	chr19	6303736	6303936	+	791.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2621.0	NM_001033342	240505.0	Mm.329622	NM_001033342	ENSMUSG00000024769	Cdc42bpg	BC046418|MRCKgamma	CDC42 binding protein kinase gamma (DMPK-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126592846-4	chr8	126592753	126592953	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001164598, exon 1 of 2)	exon (NM_001164598, exon 1 of 2)	583.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-117025810-7	chr13	117025683	117025883	+	989.857117	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081009)	promoter-TSS (NM_001081009)	-267.0	NM_001081009	52552.0	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-105655623-3	chr5	105655431	105655631	+	941.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44438.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	0.373664067542361	0.0776779127098127	0.0691818338232918	0.062540552356073	0.381569035322223	1.30595440573921	0.287449206733685	0.063706360568263	2.88181961337251	0.148317833041565	1
Merged-chr13-52530750-4	chr13	52530665	52530865	+	914.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024474)	promoter-TSS (NM_001024474)	71.0	NM_001024474	68203.0	Mm.29362	NM_001024474	ENSMUSG00000047842	Diras2	2900052J15Rik|AI414999	DIRAS family, GTP-binding RAS-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-88843328-2	chr6	88843228	88843428	+	768.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045880, intron 1 of 2)	intron (NR_045880, intron 1 of 2)	474.0	NR_045880	100038356.0	Mm.442704	NR_045880	ENSMUSG00000085828	Gm15612	-	predicted gene 15612	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-28498638-4	chr2	28498531	28498731	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139197, intron 3 of 6)	intron (NM_139197, intron 3 of 6)	1740.0	NM_139197	227671.0	Mm.484270	NM_139197	ENSMUSG00000026829	Gbgt1	Fgs|Fs	globoside alpha-1,3-N-acetylgalactosaminyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-136790973-2	chr5	136790873	136791073	+	575.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_024474, intron 3 of 12)	intron (NM_024474, intron 3 of 12)	92242.0	NM_001346699	140709.0	Mm.295020	NM_024474	ENSMUSG00000004415	Col26a1	9430032K24Rik|BC002218|Col26a|Emid2|Emu2	collagen, type XXVI, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-134394808-3	chr5	134394704	134394904	+	621.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081462, intron 9 of 29)	intron (NM_001081462, intron 9 of 29)	61458.0	NM_001081465	57080.0	Mm.332735	NM_020331	ENSMUSG00000023079	Gtf2ird1	1700012P16Rik|BEN|Cream1|ESTM9|GTF3|Gtf2il|MusTRD1|Tg(Alb1-Myc)166.8Sst|WBSCR11|X83320	general transcription factor II I repeat domain-containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-59670477-3	chr2	59670366	59670566	+	753.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290659, intron 1 of 25)	intron (NM_001290659, intron 1 of 25)	23697.0	NM_001290659	66860.0	Mm.27917	NM_198294	ENSMUSG00000035168	Tanc1	1200003E16Rik|Tanc|mKIAA1728	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-43638411-2	chr6	43638311	43638511	+	596.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013861, intron 2 of 8)	L1MD2|LINE|L1	27867.0	NM_013861	29807.0	Mm.320979	NM_013861	ENSMUSG00000029735	Tpk1	-	thiamine pyrophosphokinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-87853543-2	chr10	87853441	87853641	+	768.25	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-4724.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	1.58212878768918	2.65768342855959	1.72056638828867	1.50544241497292	1.44155852476805	2.51558155707689	1.35435082776112	1.51310647065722	-0.401148965025188	0.703614833482447	0.998431161219273
Merged-chr13-58205199-4	chr13	58205078	58205278	+	787.825012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026842, intron 1 of 10)	intron (NM_026842, intron 1 of 10)	10475.0	NM_152234	56085.0	Mm.182053	NM_026842	ENSMUSG00000005312	Ubqln1	1110046H03Rik|1810030E05Rik|AU019746|C77538|D13Ertd372e|Da41|Dsk2|Plic-1|Plic1|Xdrp1	ubiquilin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-127162183-1	chr3	127162083	127162283	+	591.0	f1_balb.idr	intron (NR_105029, intron 2 of 3)	intron (NR_105029, intron 2 of 3)	878.0	NR_105029	100862268.0	Mm.444603	NR_105029	ENSMUSG00000097456	LOC100862268	-	uncharacterized LOC100862268	ncRNA	1.14138035886911	0.854966149622267	1.92888410255201	1.34740754801596	1.15056691023363	1.83339147063158	1.40192998428556	0.82887743416143	-0.0995461506534986	0.939924296035653	0.998431161219273
Merged-chr4-132971750-4	chr4	132971648	132971848	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-2347.0	NM_010208	14191.0	Mm.271665	NM_010208	ENSMUSG00000028874	Fgr	-	FGR proto-oncogene, Src family tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-49959138-2	chr13	49959038	49959238	+	860.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	277008.0	NM_172015	105148.0	Mm.21118	NM_172015	ENSMUSG00000037851	Iars	2510016L12Rik|AI327140|AU044614|E430001P04Rik|ILRS	isoleucine-tRNA synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-94128083-4	chr11	94127941	94128141	+	958.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-83413.0	NM_009427	22057.0	Mm.259673	NM_009427	ENSMUSG00000037573	Tob1	Tob|Trob	transducer of ErbB-2.1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127718395-2	chr7	127718295	127718495	+	579.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_198858)	TTS (NM_198858)	5458.0	NM_001301283	13019.0	Mm.389954	NM_007795	ENSMUSG00000042340	Ctf1	CT-1	cardiotrophin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-89405189-4	chr6	89405081	89405281	+	984.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167736, intron 5 of 6)	intron (NM_001167736, intron 5 of 6)	-42568.0	NM_008881	18844.0	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-116333390-3	chr3	116333268	116333468	+	762.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001173553, intron 5 of 13)	intron (NM_001173553, intron 5 of 13)	20876.0	NM_001355646	229776.0	Mm.17647	NM_001080818	ENSMUSG00000033502	Cdc14a	A830059A17Rik|CDC14A2|CDC14a1|Cdc14	CDC14 cell division cycle 14A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-64120701-6	chr1	64120587	64120787	+	837.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033563, intron 1 of 3)	intron (NM_033563, intron 1 of 3)	702.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-25297132-4	chr10	25297051	25297251	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018747, intron 1 of 7)	CpG	2012.0	NM_018747	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-78984964-4	chr11	78984859	78985059	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159301)	promoter-TSS (NM_001159301)	-35.0	NM_010708	16859.0	Mm.341434	NM_010708	ENSMUSG00000001123	Lgals9	AA407335|AI194909|AI265545|LGALS35|Lgals5|gal-9|galectin-9	lectin, galactose binding, soluble 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-79542741-4	chr3	79542650	79542850	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162999, intron 1 of 16)	intron (NM_001162999, intron 1 of 16)	24929.0	NM_001162999	329679.0	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding	3.16897418099815	3.1390506068541	3.03338506722543	3.51768488198861	2.72570582946862	3.1621128247021	2.45493080463734	1.53901259822148	-1.14091147644139	0.116568188077975	0.534780130868259
Merged-chr18-73502138-4	chr18	73502039	73502239	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-70566.0	NM_001039214	240396.0	Mm.24131	NM_001039214	ENSMUSG00000037253	Mex3c	A130001D14Rik|BC035207|BM-013|Rkhd2	mex3 RNA binding family member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-103253762-2	chr11	103253662	103253862	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016896, intron 1 of 15)	intron (NM_016896, intron 1 of 15)	13639.0	NM_016896	53859.0	Mm.158981	NM_016896	ENSMUSG00000020941	Map3k14	Nik|aly	mitogen-activated protein kinase kinase kinase 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-118992014-4	chr4	118991924	118992124	+	852.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30057.0	NM_133892	100470.0	Mm.26698	NM_133892	ENSMUSG00000024903	Lao1	AW990848	L-amino acid oxidase 1	protein-coding	2.50809079556329	3.48560103480767	2.17841101187726	1.93443306412397	3.25688714406367	2.72283098995253	2.63076688401685	2.28494412995388	0.186424084315973	0.81353981648667	0.998431161219273
Merged-chr8-122887457-2	chr8	122887357	122887557	+	556.75	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_037865, exon 12 of 14)	non-coding (NR_037865, exon 12 of 14)	39083.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-62786175-4	chr16	62786093	62786293	+	843.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178925, intron 1 of 5)	Lx8|LINE|L1	523.0	NM_178925	106338.0	Mm.26321	NM_178925	ENSMUSG00000050312	Nsun3	6720484A09Rik|AU022521	NOL1/NOP2/Sun domain family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-67828298-2	chr9	67828198	67828398	+	647.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4032.0	NM_001163143	244911.0	Mm.325849	NM_001163143	ENSMUSG00000047990	C2cd4a	EG244911|Fam148a	C2 calcium-dependent domain containing 4A	protein-coding	0.218884438611972	0.0869202329797611	0.080472010616906	0.824554374031991	0.223415841923042	0.0883699486403138	0.0818966314914329	0.833396646216094	0.0302683508441657	0.988157410043917	1
Merged-chr3-54709181-4	chr3	54709069	54709269	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_019995, exon 11 of 20)	exon (NM_019995, exon 11 of 20)	14046.0	NM_001358015	56790.0	Mm.486375	NM_019995	ENSMUSG00000027751	Supt20	AA667204|AI450544|D3Ertd300e|Fam48a|Supt20h|p38IP	suppressor of Ty 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-3855990-2	chr8	3855890	3856090	+	928.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1704.0	NM_130905	170780.0	Mm.52281	NM_130905	ENSMUSG00000040197	Cd209e	SIGNR4|mSIGNR4	CD209e antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-88260488-3	chr7	88260386	88260586	+	741.06665	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17599.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-129831471-4	chr3	129831404	129831604	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026578)	promoter-TSS (NM_026578)	-108.0	NM_026578	68147.0	Mm.24873	NM_026578	ENSMUSG00000028010	Gar1	AA409823|AI326794|C430047J18Rik|Nola1	GAR1 ribonucleoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-34788096-2	chr2	34787996	34788196	+	590.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_145522, intron 4 of 7)	intron (NM_145522, intron 4 of 7)	11816.0	NM_145522	227746.0	Mm.158705	NM_145522	ENSMUSG00000070953	Rabepk	8430412M01Rik|9530020D24Rik|AV073337|C87311|Rab9p40	Rab9 effector protein with kelch motifs	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-136234492-2	chr1	136234392	136234592	+	805.214294	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028872)	promoter-TSS (NM_028872)	-212.0	NM_028872	67313.0	Mm.36763	NM_028872	ENSMUSG00000041605	5730559C18Rik	1700034M08Rik|4933426C09Rik|AI586180|D1Mgi54|Inava	RIKEN cDNA 5730559C18 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120436061-4	chr8	120435965	120436165	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52801.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-69457281-1	chr12	69457181	69457381	+	564.0	f0_balb.idr	Intergenic	Intergenic	18269.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	1.78964393884884	2.4595716641267	1.20287480261641	2.53576040197397	1.80428310487191	1.69582389569316	1.95532152609439	1.75634841296958	-0.829013197727908	0.417090409528496	0.897222495742637
Merged-chr1-56524896-3	chr1	56524796	56524996	+	725.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	112555.0	NM_027661	71066.0	Mm.152656	NM_027661	ENSMUSG00000045336	Hsfy2	4933413G11Rik|Hspy2l	heat shock transcription factor, Y-linked 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-137662025-2	chr5	137661925	137662125	+	932.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178162, intron 5 of 11)	MTD|LTR|ERVL-MaLR	-16311.0	NM_010571	16369.0	Mm.24486	NM_010571	ENSMUSG00000047182	Irs3	AA408304	insulin receptor substrate 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129827935-4	chr4	129827827	129828027	+	980.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164745, intron 1 of 5)	intron (NM_001164745, intron 1 of 5)	7219.0	NM_001164745	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	-1.5061220274826	-1.47360709383584	-1.48343987814663	-1.49151681994238	-1.50383953926072	-1.47147628845725	-1.0170701920923	-1.49007105122263	2.15652851593596	0.535359572134045	1
Merged-chr7-88279722-4	chr7	88279601	88279801	+	966.491699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009982, intron 1 of 6)	B1_Mus1|SINE|Alu	1616.0	NM_001311790	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101763855-3	chr11	101763764	101763964	+	849.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144831, intron 19 of 22)	intron (NM_144831, intron 19 of 22)	21446.0	NM_008815	18612.0	Mm.5025	NM_008815	ENSMUSG00000017724	Etv4	AW414408|Pea-3|Pea3	ets variant 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-22009340-4	chr16	22009252	22009452	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357424)	promoter-TSS (NM_001357424)	-132.0	NM_029457	75826.0	Mm.297431	NM_029457	ENSMUSG00000022855	Senp2	2310007L05Rik|4930538C18Rik|AI646780|AW554757|Smt3ip2|SuPr-1|mKIAA1331	SUMO/sentrin specific peptidase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-17587566-4	chr17	17587487	17587687	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172827, intron 1 of 17)	intron (NM_172827, intron 1 of 17)	36902.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	3.17868858198291	2.830009675065	1.8033307685814	2.42923732437431	2.95726964143372	3.05326741841012	2.51889015419265	2.44171814458333	0.195224855480524	0.798663287538542	0.998431161219273
Merged-chr2-79696676-4	chr2	79696568	79696768	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11112.0	NM_172420	75276.0	Mm.257373	NM_172420	ENSMUSG00000034683	Ppp1r1c	4930565M23Rik|4930579P15Rik	protein phosphatase 1, regulatory (inhibitor) subunit 1C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-33157494-2	chr12	33157394	33157594	+	783.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028139, intron 2 of 3)	intron (NM_028139, intron 2 of 3)	9808.0	NM_028139	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-122376468-4	chr2	122376371	122376571	+	932.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7553.0	NM_001013829	435684.0	Mm.458215	NM_001013829	ENSMUSG00000033256	Shf	-	Src homology 2 domain containing F	protein-coding	3.97328096902265	4.48649795101063	3.83465451901299	4.70686575490849	4.24919871158005	3.27173099968548	4.08188613191391	4.76358568324186	-0.123863087769293	0.791006531578232	0.998431161219273
Merged-chr16-38731103-4	chr16	38731006	38731206	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11153.0	NR_152434	56375.0	Mm.182377	NM_019804	ENSMUSG00000022793	B4galt4	9130402O08Rik|B4galt-IV|b4Gal-T4|beta4Gal-T4|beta4GalT-IV	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127098200-2	chr10	127098100	127098300	+	818.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177614, intron 11 of 13)	intron (NM_177614, intron 11 of 13)	19293.0	NM_001033263	216439.0	Mm.336761	NM_001033263	ENSMUSG00000025422	Agap2	AGAP-2|Centg1|PIKE|cnt-g1|mKIAA0167	ArfGAP with GTPase domain, ankyrin repeat and PH domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-74793718-3	chr5	74793685	74793885	+	871.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-90882.0	NM_001159577	16924.0	Mm.440403	NM_010727	ENSMUSG00000029228	Lnx1	Lnx	ligand of numb-protein X 1	protein-coding	1.02427741177383	1.36826389841758	1.32615066625209	1.29255321764026	2.64661609338565	2.30984104157095	1.86864706748184	2.24526147395383	3.4880111036035	0.00300961737293967	0.0454396676684524
Merged-chr11-22840752-2	chr11	22840642	22840842	+	758.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001169114, intron 1 of 1)	B3|SINE|B2	18993.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-44825598-1	chr18	44825498	44825698	+	549.0	f1_balb.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-3067.0	NM_001163013	240255.0	Mm.244482	NM_001163013	ENSMUSG00000034653	Ythdc2	3010002F02Rik|BC037178	YTH domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-73044773-3	chr12	73044701	73044901	+	848.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009189, intron 1 of 1)	CpG	1911.0	NM_009189	20471.0	Mm.4645	NM_009189	ENSMUSG00000051367	Six1	BB138287	sine oculis-related homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-110809390-3	chr5	110809287	110809487	+	949.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347394, intron 1 of 27)	intron (NM_001347394, intron 1 of 27)	694.0	NM_009469	22241.0	Mm.271898	NM_009469	ENSMUSG00000029512	Ulk1	AU041434|Unc51.1|mKIAA0722	unc-51 like kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-37657118-2	chr3	37657018	37657218	+	550.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17171.0	NM_011896	24063.0	Mm.330986	NM_011896	ENSMUSG00000037211	Spry1	sprouty1|spry-1	sprouty RTK signaling antagonist 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-83634702-4	chr10	83634595	83634795	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145220, intron 2 of 20)	intron (NM_145220, intron 2 of 20)	13969.0	NM_145220	216190.0	Mm.282985	NM_145220	ENSMUSG00000020263	Appl2	Dip3b	adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-91962917-4	chr5	91962817	91963017	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_073442)	promoter-TSS (NR_073442)	35.0	NR_028429	381650.0	Mm.159453	NR_028429	ENSMUSG00000102644	Thap6	4930534K21Rik|AI448650	THAP domain containing 6	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119274198-2	chr11	119274098	119274298	+	912.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008064, intron 4 of 19)	intron (NM_008064, intron 4 of 19)	6235.0	NM_008064	14387.0	Mm.4793	NM_008064	ENSMUSG00000025579	Gaa	E430018M07Rik	glucosidase, alpha, acid	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-142401926-4	chr5	142401826	142402026	+	888.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_199068, exon 1 of 9)	exon (NM_199068, exon 1 of 9)	429.0	NM_199068	17425.0	Mm.24214	NM_010812	ENSMUSG00000056493	Foxk1	A630048H08Rik|AI463295|Gm10868|Mnf	forkhead box K1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71087160-1	chr17	71087060	71087260	+	628.0	f1_c57bl6.idr	intron (NM_001083934, intron 18 of 36)	B3|SINE|B2	67603.0	NM_001083934	17929.0	Mm.4103	NM_010867	ENSMUSG00000024049	Myom1	D430047A17Rik	myomesin 1	protein-coding	3.00357739412418	2.02730439006359	3.32916726134596	3.57923553191704	2.6209784092164	1.79736531352989	3.13078630817541	1.40068486567925	-1.23872983743988	0.146249502328675	0.596296396331935
Merged-chr2-119242489-3	chr2	119242400	119242600	+	866.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016907, intron 2 of 10)	intron (NM_016907, intron 2 of 10)	5140.0	NM_016907	20732.0	Mm.104955	NM_016907	ENSMUSG00000027315	Spint1	HAI-1	serine protease inhibitor, Kunitz type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26583760-2	chr17	26583671	26583871	+	829.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026170, intron 1 of 9)	intron (NM_026170, intron 1 of 9)	22259.0	NM_026170	67458.0	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	2.5133361846737	2.73079575548153	2.16891688907703	2.81099139864377	2.2530355241688	2.84650513438189	1.36807596512108	1.58629798228148	-0.915559609803698	0.315435573158504	0.817980640376335
Merged-chr18-66479437-2	chr18	66479337	66479537	+	815.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A2|LTR|ERVL-MaLR	20833.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-65247473-4	chr5	65247382	65247582	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_153391, exon 28 of 37)	exon (NM_153391, exon 28 of 37)	47786.0	NM_153391	213081.0	Mm.127550	NM_153391	ENSMUSG00000037890	Wdr19	C330027H04Rik|D330023L08Rik|DYF2|Ift144|PWDMP|mKIAA1638	WD repeat domain 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-115746641-4	chr9	115746532	115746732	+	971.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-162823.0	NM_028638	73748.0	Mm.485018	NM_028638	ENSMUSG00000056880	Gadl1	1110027M19Rik|ADC|CSADC	glutamate decarboxylase-like 1	protein-coding	-0.1713137459309	-0.306504059064393	-0.311297537215805	-0.315003354797005	-0.320251786802492	0.0696544856997074	-0.310239368355971	0.517955595376465	2.94774920592808	0.223124449021104	1
Merged-chr12-80769818-4	chr12	80769731	80769931	+	984.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9116.0	NM_001008423	380768.0	Mm.29367	NM_001008423	ENSMUSG00000062961	Ccdc177	Gm1568	coiled-coil domain containing 177	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-177338871-3	chr1	177338781	177338981	+	933.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-90114.0	NM_011785	23797.0	Mm.235194	NM_011785	ENSMUSG00000019699	Akt3	AI851531|D930002M15Rik|Nmf350	thymoma viral proto-oncogene 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-95851050-4	chr11	95850935	95851135	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MD3|LINE|L1	-7782.0	NR_045187	73906.0	Mm.399894	NR_045187	ENSMUSG00000086015	4833417C18Rik	-	RIKEN cDNA 4833417C18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106501413-4	chr11	106501307	106501507	+	976.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_030703)	TTS (NR_030703)	416.0	NR_030703	100216537.0		NR_030703	ENSMUSG00000065126	Snord104	-	small nucleolar RNA, C/D box 104	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-91034324-4	chr1	91034234	91034434	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111312, intron 1 of 12)	PB1D9|SINE|Alu	-19110.0	NM_001111311	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-102567964-3	chr7	102567863	102568063	+	766.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2481.0	NM_009277	20821.0	Mm.321227	NM_009277	ENSMUSG00000030966	Trim21	Ro52|Ssa1	tripartite motif-containing 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69368165-4	chr11	69368062	69368262	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146019, intron 1 of 39)	intron (NM_146019, intron 1 of 39)	1264.0	NM_146019	216848.0	Mm.178246	NM_146019	ENSMUSG00000018474	Chd3	2600010P09Rik|AF020312|Chd7|Prp7|Prp9-1	chromodomain helicase DNA binding protein 3	protein-coding	2.75957665575991	2.40180669775356	2.58985799762746	1.42786086756824	2.78292838394167	2.04949629821362	3.38441305630668	3.28349028484484	1.12053063430664	0.171812942533911	0.63952792694577
Merged-chr11-99179105-4	chr11	99178995	99179195	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-24018.0	NM_007719	12775.0	Mm.2932	NM_007719	ENSMUSG00000037944	Ccr7	CC-CKR-7|CCR-7|CD197|Cdw197|Cmkbr7|EBI1|Ebi1h	chemokine (C-C motif) receptor 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153529040-13	chr2	153528806	153529006	+	807.0448610000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001134300, intron 1 of 10)	CpG	1065.0	NM_001134300	329540.0	Mm.50600	NM_001001986	ENSMUSG00000061411	Nol4l	4931410H15|8430427H17Rik|AI429157|Gm1636	nucleolar protein 4-like	protein-coding	1.5605433310946	1.27997153225721	1.07830347136407	1.55913883356676	1.02401558917235	1.28890094896567	1.08460836987104	1.56783806352805	-0.513985337696582	0.675582761639269	0.99440487726309
Merged-chr10-79681009-2	chr10	79680909	79681109	+	945.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1186.0	NM_001359818	216150.0	Mm.21981	NM_177613	ENSMUSG00000020307	Cdc34	AI327276|E2-CDC34|UBE2R1	cell division cycle 34	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83969249-1	chr11	83969149	83969349	+	863.6666869999999	f0_balb.idr	intron (NM_194341, intron 1 of 19)	B3|SINE|B2	4818.0	NM_194341	217030.0	Mm.82680	NM_194341	ENSMUSG00000034940	Synrg	Ap1gbp1|SYNG	synergin, gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-144580694-2	chr7	144580594	144580794	+	758.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_010175, exon 2 of 2)	exon (NM_010175, exon 2 of 2)	1742.0	NM_010175	14082.0	Mm.5126	NM_010175	ENSMUSG00000031077	Fadd	Mort1/FADD	Fas (TNFRSF6)-associated via death domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-46129915-2	chr17	46129815	46130015	+	976.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029338, intron 4 of 4)	intron (NM_029338, intron 4 of 4)	14283.0	NM_029338	75564.0	Mm.17993	NM_029338	ENSMUSG00000023966	Rsph9	1700027N10Rik	radial spoke head 9 homolog (Chlamydomonas)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81129904-1	chr10	81129804	81130004	+	556.0	f0_balb.idr	Intergenic	Intergenic	-6367.0	NM_010731	16969.0	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-72535381-4	chr12	72535305	72535505	+	818.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026327)	promoter-TSS (NM_026327)	-952.0	NM_026327	67708.0	Mm.11233	NM_026327	ENSMUSG00000034501	Pcnx4	1810048J11Rik|4932413O10|AU017192|Pcnxl4	pecanex homolog 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-113851909-1	chr5	113851809	113852009	+	739.0	f1_c57bl6.idr	intron (NM_011779, intron 4 of 10)	intron (NM_011779, intron 4 of 10)	-21408.0	NM_009151	20345.0	Mm.332590	NM_009151	ENSMUSG00000048163	Selplg	CD162|Psgl-1|Psgl1|Selp1|Selpl	selectin, platelet (p-selectin) ligand	protein-coding	0.704098842415167	0.776404464936713	0.124918549682463	0.11964745481545	0.112159064038885	0.788031979132935	0.126421306376544	0.120569936462573	-0.878074532868205	0.681178878226679	1
Merged-chr4-150491101-2	chr4	150491001	150491201	+	662.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 7 of 22)	intron (NM_001085492, intron 7 of 22)	161073.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5490954-2	chr17	5490854	5491054	+	854.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D11|SINE|Alu	-1646.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80396709-2	chr7	80396609	80396809	+	874.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_011046, intron 6 of 15)	B1_Mur1|SINE|Alu	6103.0	NM_011046	18550.0	Mm.5241	NM_011046	ENSMUSG00000030530	Furin	9130404I01Rik|Fur|PACE|Pcsk3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-55381851-4	chr15	55381757	55381957	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181277, intron 11 of 47)	intron (NM_181277, intron 11 of 47)	74107.0	NM_181277	12818.0	Mm.297859	NM_181277	ENSMUSG00000022371	Col14a1	5730412L22Rik|AW108078	collagen, type XIV, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-99522810-4	chr6	99522709	99522909	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG-12329	-1816.0	NM_001347345	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-56714809-4	chr6	56714714	56714914	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030235)	promoter-TSS (NM_030235)	-91.0	NM_030235	78937.0	Mm.105343	NM_030235	ENSMUSG00000029787	Avl9	5830411G16Rik|D730049P16Rik|mKIAA0241	AVL9 cell migration associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30554055-4	chr2	30553949	30554149	+	875.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J1|LTR|ERVL-MaLR	-40995.0	NM_030137	78617.0	Mm.40413	NM_030137	ENSMUSG00000047363	Cstad	9530039B02Rik	CSA-conditional, T cell activation-dependent protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-138915974-2	chr1	138915874	138916074	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39024.0	NR_138576	75546.0	Mm.71176	NR_138576	ENSMUSG00000099808	1700019P21Rik	-	RIKEN cDNA 1700019P21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-53312663-4	chr19	53312529	53312729	+	903.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360348, intron 1 of 5)	intron (NM_001360348, intron 1 of 5)	1184.0	NM_001360348	17859.0	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120595958-2	chr11	120595858	120596058	+	574.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_011568, exon 3 of 6)	exon (NM_011568, exon 3 of 6)	2407.0	NM_011568	21681.0	Mm.1886	NM_011568	ENSMUSG00000025134	Alyref	Aly|Ref1|Ref1-I|Refbp1|Tho4|Thoc4	Aly/REF export factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-132690935-3	chr7	132690822	132691022	+	577.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029609, intron 6 of 6)	B4A|SINE|B4	80279.0	NM_029609	76429.0	Mm.276721	NM_029609	ENSMUSG00000030946	Lhpp	2310007H09Rik	phospholysine phosphohistidine inorganic pyrophosphate phosphatase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30194696-1	chr7	30194596	30194796	+	1000.0	f1_balb.idr	intron (NM_009795, intron 1 of 10)	intron (NM_009795, intron 1 of 10)	457.0	NM_009795	12336.0	Mm.439782	NM_009795	ENSMUSG00000001794	Capns1	Capa-4|Capa4|Capn4|Cdps|Css1|D7Ertd146e	calpain, small subunit 1	protein-coding	1.99100174224414	1.10672224550176	0.850592313948096	0.83736879896736	1.62992920877267	1.31203109249291	1.08080931134386	1.90621856560847	0.674057556023722	0.615032042759118	0.977303445845731
Merged-chr5-142458923-1	chr5	142458823	142459023	+	850.0	f0_balb.idr	3' UTR (NM_199068, exon 9 of 9)	3' UTR (NM_199068, exon 9 of 9)	-5008.0	NM_172725	231855.0	Mm.78250	NM_172725	ENSMUSG00000039623	Ap5z1	C330006K01Rik	adaptor-related protein complex 5, zeta 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131038310-4	chr1	131038193	131038393	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18448.0	NM_010548	16153.0	Mm.874	NM_010548	ENSMUSG00000016529	Il10	CSIF|Il-10	interleukin 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-11113446-3	chr2	11113341	11113541	+	730.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58941.0	NM_008859	18761.0	Mm.329993	NM_008859	ENSMUSG00000026778	Prkcq	A130035A12Rik|AW494342|PKC-0|PKC-theta|PKCtheta|Pkcq	protein kinase C, theta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115101323-2	chr11	115101223	115101423	+	637.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163753, intron 1 of 8)	intron (NM_001163753, intron 1 of 8)	9892.0	NM_001163753	58222.0	Mm.143789	NM_021411	ENSMUSG00000020732	Rab37	B230331O03Rik|B230354I04Rik	RAB37, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-107953940-1	chr13	107953840	107954040	+	670.0	f0_balb.idr	Intergenic	Intergenic	-63876.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	-1.26472950133113	-1.51255384623736	-1.37364594462016	-1.52972510195091	-1.54153971950802	-1.5105109001971	-1.51984705072522	-1.52833894650432	-1.8392127899658	0.598030108707587	1
Merged-chr4-130822040-2	chr4	130821940	130822140	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011520, intron 4 of 4)	intron (NM_011520, intron 4 of 4)	29503.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-74964667-4	chr1	74964569	74964769	+	942.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12997.0	NM_010544	16147.0	Mm.439736	NM_010544	ENSMUSG00000006538	Ihh	HHG-2	Indian hedgehog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3374711-2	chr19	3374611	3374811	+	822.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_013495, intron 12 of 18)	intron (NM_013495, intron 12 of 18)	-14146.0	NM_001039658	17771.0	Mm.209941	NM_010841	ENSMUSG00000024905	Tesmin	Mtl5	testis expressed metallothionein like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-16883449-1	chr12	16883349	16883549	+	607.0	f1_balb.idr	Intergenic	Intergenic	-11529.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	0.623170584992148	1.06699077202595	1.41212441535884	0.639211584734362	0.946948603016528	1.48961301355371	1.42629560886106	0.640879183708549	0.798132549121553	0.603741118018109	0.973589491466885
Merged-chr2-25240926-4	chr2	25240832	25241032	+	936.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1035.0	NM_026415	67859.0	Mm.46431	NM_026415	ENSMUSG00000036731	Cysrt1	2310002J15Rik|AV023762	cysteine rich tail 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-82818137-4	chr10	82817915	82818115	+	935.267822	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038042, intron 1 of 2)	B1F2|SINE|Alu	5892.0	NR_038042	70003.0	Mm.48789	NR_038042	ENSMUSG00000056821	1700028I16Rik	-	RIKEN cDNA 1700028I16 gene	ncRNA	-0.719668593078644	-1.16403364937312	-1.00758898798598	-1.18337273127143	-1.18809839507284	-1.16173278673118	-1.17224760187868	-1.18181157732017	-2.51634718883157	0.443357463893338	1
Merged-chr5-123974763-1	chr5	123974663	123974863	+	588.0	f1_c57bl6.idr	intron (NM_145070, intron 1 of 31)	intron (NM_145070, intron 1 of 31)	1135.0	NM_145070	29816.0	Mm.149954	NM_145070	ENSMUSG00000000915	Hip1r	AA410023|mKIAA0655	huntingtin interacting protein 1 related	protein-coding	0.389716083912326	0.262295775326126	0.438396373983718	1.14557218122419	0.394292818136325	0.263872920047607	0.443554930208336	0.6951513869056	-0.966868632372493	0.578459421064935	1
Merged-chr14-50837443-3	chr14	50837343	50837543	+	771.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009351, exon 37 of 55)	exon (NM_009351, exon 37 of 55)	29527.0	NM_009632	11546.0	Mm.281482	NM_009632	ENSMUSG00000036023	Parp2	ADPRT-2|ARTD2|Adprt2|Adprtl2|Aspartl2|C78626|PARP-2|mPARP-2|pADPRT-2	poly (ADP-ribose) polymerase family, member 2	protein-coding	4.04118217584936	3.41043684003178	3.81453671217915	4.11499797589843	2.49990170175911	1.72831382467631	3.40931618189518	2.78029615331376	-1.79383920090162	0.00444276014855924	0.0610353850332981
Merged-chr5-115542872-4	chr5	115542762	115542962	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011223, intron 1 of 10)	intron (NM_011223, intron 1 of 10)	-16605.0	NM_007475	11837.0	Mm.5286	NM_007475	ENSMUSG00000067274	Rplp0	36B4|Arbp|L10E	ribosomal protein, large, P0	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-42052364-2	chr13	42052264	42052464	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007772, intron 1 of 8)	CpG	343.0	NM_007772	110521.0	Mm.4808	NM_007772	ENSMUSG00000021366	Hivep1	Cryabp1	human immunodeficiency virus type I enhancer binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-60710218-3	chr18	60710159	60710359	+	642.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001348100, intron 2 of 14)	MIRc|SINE|MIR	17307.0	NM_001348103	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	-0.654884096477252	-0.71398425875234	-0.899749082837602	-0.90170543576632	-0.544466060674695	-0.890224666387592	-0.899188185885918	-0.901364309040085	-0.140007874725338	0.961898308992435	1
Merged-chr14-61311112-2	chr14	61311012	61311212	+	821.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_177337, exon 2 of 2)	exon (NM_177337, exon 2 of 2)	1359.0	NM_177337	219144.0	Mm.206566	NM_177337	ENSMUSG00000043157	Arl11	ARLTS1|C730007L20Rik	ADP-ribosylation factor-like 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-25532999-2	chr9	25532899	25533099	+	725.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 2 of 7)	intron (NM_026189, intron 2 of 7)	51402.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-3025122-3	chr9	3025056	3025256	+	800.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GSAT_MM|Satellite|Satellite	13587.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-21755243-4	chr4	21755146	21755346	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290420, intron 11 of 11)	intron (NM_001290420, intron 11 of 11)	11965.0	NM_029840	77032.0	Mm.87238	NM_029840	ENSMUSG00000028251	Tstd3	2610029I01Rik	thiosulfate sulfurtransferase (rhodanese)-like domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-48590615-1	chr14	48590515	48590715	+	635.0	f0_balb.idr	Intergenic	Intergenic	72119.0	NM_001360226	18424.0	Mm.134516	NM_144841	ENSMUSG00000021848	Otx2	E130306E05Rik	orthodenticle homeobox 2	protein-coding	0.541931809851466	0.180510436227944	0.174175240464662	0.169278670004797	0.822945750533533	0.811258661736688	0.358651909843838	0.170134673892803	2.09703412320179	0.298416201685747	1
Merged-chr14-31204451-2	chr14	31204351	31204551	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_022656, exon 2 of 21)	exon (NM_022656, exon 2 of 21)	2375.0	NM_022656	64652.0	Mm.298728	NM_022656	ENSMUSG00000021910	Nisch	1200007D05Rik|3202002H23Rik|AW494485|I-1|edsn	nischarin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115487294-1	chr5	115487194	115487394	+	578.0	f1_c57bl6.idr	Intergenic	Intergenic	-2810.0	NM_133760	75387.0	Mm.332616	NM_133760	ENSMUSG00000029524	Sirt4	4930596O17Rik	sirtuin 4	protein-coding	0.0612248706766329	0.7125090568473	0.661143714537125	0.0692641770798662	0.0624231971803515	0.0817268890957618	0.0754660647496442	0.627770471641209	-1.18266971309922	0.588932386301097	1
Merged-chr14-123589752-1	chr14	123589652	123589852	+	545.0	f1_balb.idr	intron (NM_177393, intron 6 of 43)	Lx3C|LINE|L1	37392.0	NM_177393	338370.0	Mm.255348	NM_177393	ENSMUSG00000000197	Nalcn	A530023G15Rik|AI849508|Vgcnl1	sodium leak channel, non-selective	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3674230-3	chr12	3674130	3674330	+	559.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162465, intron 8 of 17)	intron (NM_001162465, intron 8 of 17)	101246.0	NM_007886	13528.0	Mm.286202	NM_007886	ENSMUSG00000071454	Dtnb	-	dystrobrevin, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-84169002-2	chr11	84168902	84169102	+	550.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1526.0	NM_001037932	628813.0	Mm.390389	NM_001037932	ENSMUSG00000051452	Gm11437	AI463690	predicted gene 11437	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-72369494-4	chr2	72369378	72369578	+	885.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023057, intron 5 of 19)	intron (NM_023057, intron 5 of 19)	83777.0	NM_178084	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-110002228-4	chr7	110002127	110002327	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_037959, intron 2 of 2)	RLTR49|LTR|ERVK	4419.0	NR_037959	69781.0	Mm.440728	NR_037959	ENSMUSG00000101585	1600010M07Rik	-	RIKEN cDNA 1600010M07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-6191062-4	chr4	6190965	6191165	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026534)	promoter-TSS (NM_026534)	-40.0	NM_026534	68053.0	Mm.404043	NM_026534	ENSMUSG00000028243	Ubxn2b	3110003A22Rik|6430407D20Rik|AI451665|p37	UBX domain protein 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-15280783-2	chr9	15280683	15280883	+	914.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144933)	promoter-TSS (NM_144933)	-916.0	NM_144933	234959.0	Mm.44151	NM_144933	ENSMUSG00000031935	Med17	77kDa|C330002H14Rik|Crsp6|Trap80	mediator complex subunit 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-69554335-2	chr5	69554235	69554435	+	864.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-2589.0	NM_172711	231279.0	Mm.21105	NM_172711	ENSMUSG00000029208	Guf1	4631409J12|AA407526|EF-4	GUF1 homolog, GTPase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-63038062-3	chr13	63037961	63038161	+	760.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289926, intron 3 of 15)	intron (NM_001289926, intron 3 of 15)	73168.0	NM_001289924	72061.0	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46756603-2	chr8	46756503	46756703	+	780.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_152560, intron 1 of 7)	intron (NR_152560, intron 1 of 7)	16858.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-112844068-3	chr12	112843968	112844168	+	831.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-14547.0	NM_001359234	71963.0	Mm.313185	NM_028023	ENSMUSG00000047832	Cdca4	2410018C03Rik|HEPP|SEI-3	cell division cycle associated 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-135268288-4	chr1	135268174	135268374	+	876.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159624, intron 4 of 9)	intron (NM_001159624, intron 4 of 9)	-9802.0	NM_007921	13710.0	Mm.441439	NM_007921	ENSMUSG00000003051	Elf3	ESE-1|ESX|jen	E74-like factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-82867749-7	chr18	82867649	82867849	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11852.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-23521929-3	chr13	23521828	23522028	+	935.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	tRNA-Ser-AGY|tRNA|tRNA	-9116.0	NM_153173	69386.0	Mm.158272	NM_153173	ENSMUSG00000060981	Hist1h4h	1700024H08Rik	histone cluster 1, H4h	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-47646260-2	chr14	47646134	47646334	+	618.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10B|LTR|ERVL	-3077.0	NM_001347527	16709.0	Mm.3110	NM_008477	ENSMUSG00000021843	Ktn1	-	kinectin 1	protein-coding	0.750794390440997	1.36723718460919	0.780591653569295	0.769536894290797	1.43217459661454	1.74868124940089	1.458280958863	1.40638581829647	2.58585437132146	0.0743710145996731	0.412173352805506
Merged-chr3-96547728-1	chr3	96547628	96547828	+	766.5	f1_balb.idr	Intergenic	Intergenic	-10229.0	NM_023719	56338.0	Mm.410189	NM_023719	ENSMUSG00000038393	Txnip	1200008J08Rik|AA682105|Hyplip1|THIF|Tbp-2|VDUP1	thioredoxin interacting protein	protein-coding	1.5064878049018	2.13099000073526	1.00383233008506	1.22687139316198	1.77908903738225	2.0242853557692	2.72935795474402	0.986410190030635	1.29710828466108	0.271084754217821	0.774458240988193
Merged-chr5-64934441-3	chr5	64934349	64934549	+	887.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001276445)	promoter-TSS (NM_001276445)	-891.0	NM_001276445	21897.0	Mm.273024	NM_030682	ENSMUSG00000044827	Tlr1	-	toll-like receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-49164435-3	chr16	49164359	49164559	+	609.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166210, intron 32 of 40)	intron (NM_001166210, intron 32 of 40)	106973.0	NM_001166210	667772.0	Mm.301387	NM_001166210	ENSMUSG00000092009	Myh15	EG667772	myosin, heavy chain 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-92358198-2	chr8	92358098	92358298	+	930.916626	f1_balb.idr|f1_c57bl6.idr	exon (NM_018826, exon 1 of 3)	exon (NM_018826, exon 1 of 3)	402.0	NM_018826	54352.0	Mm.101153	NM_018826	ENSMUSG00000031737	Irx5	-	Iroquois homeobox 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117773955-2	chr8	117773855	117774055	+	552.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	28019.0	NM_001357233	68533.0	Mm.181836	NM_026758	ENSMUSG00000031843	Mphosph6	1110001M01Rik|AA536809|C86426	M phase phosphoprotein 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-63828940-4	chr5	63828844	63829044	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029554, intron 1 of 3)	intron (NM_029554, intron 1 of 3)	16449.0	NM_029554	76261.0	Mm.38143	NM_029554	ENSMUSG00000060512	0610040J01Rik	AI662686	RIKEN cDNA 0610040J01 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-55480989-4	chr12	55480937	55481137	+	917.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11610.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-101916059-2	chr5	101915959	101916159	+	675.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 23 of 66)	intron (NM_172882, intron 23 of 66)	150929.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106218253-2	chr11	106218153	106218353	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361643, intron 1 of 16)	intron (NM_001361643, intron 1 of 16)	1327.0	NM_028074	72047.0	Mm.41367	NM_028074	ENSMUSG00000020705	Ddx42	1810047H21Rik|AW319508|AW556242|B430002H05Rik|RHELP|RNAHP|SF3b125	DEAD (Asp-Glu-Ala-Asp) box polypeptide 42	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-108644694-4	chr12	108644533	108644733	+	724.075012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163396, intron 2 of 14)	intron (NM_001163396, intron 2 of 14)	8880.0	NM_001163396	14026.0	Mm.238841	NM_007965	ENSMUSG00000021262	Evl	AI528774|b2b2600Clo	Ena-vasodilator stimulated phosphoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-48380860-4	chr4	48380798	48380998	+	723.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001281978, intron 4 of 18)	intron (NM_001281978, intron 4 of 18)	92565.0	NM_172304	269536.0	Mm.272025	NM_172304	ENSMUSG00000028345	Tex10	2610206N19Rik|2810462N03Rik|BC006867	testis expressed gene 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-37517707-3	chr9	37517602	37517802	+	913.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146222, intron 2 of 3)	intron (NM_146222, intron 2 of 3)	-10387.0	NR_136939	69524.0	Mm.41751	NM_027102	ENSMUSG00000001946	Esam	2310008D05Rik|Esam1|W117m	endothelial cell-specific adhesion molecule	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-16313465-4	chr9	16313357	16313557	+	969.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080814, intron 1 of 24)	ID_B1|SINE|B4	64774.0	NM_001080814	270120.0	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT atypical cadherin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-5421827-3	chr2	5421744	5421944	+	662.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030601, intron 1 of 1)	MTD|LTR|ERVL-MaLR	42454.0	NR_030601	100124465.0		NR_030601	ENSMUSG00000078031	Mir466d	Mirn466d	microRNA 466d	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-105396348-3	chr7	105396238	105396438	+	737.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001242363, intron 1 of 12)	L2c|LINE|L2	3716.0	NM_001242364	74349.0	Mm.30254	NM_199009	ENSMUSG00000044465	Fam160a2	4632419K20Rik|6530415H11Rik|FHIP	family with sequence similarity 160, member A2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-132101014-4	chr2	132100912	132101112	+	905.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355431, intron 2 of 6)	RLTR19-int|LTR|ERVK	44096.0	NM_001355431	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117438233-2	chr8	117438133	117438333	+	612.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028941, intron 10 of 20)	RLTR25B|LTR|ERVK	-14790.0	NR_106045	102466801.0		NR_106045	ENSMUSG00000099062	Mir7077	Gm27774|mmu-mir-7077	microRNA 7077	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133660212-2	chr4	133660095	133660295	+	947.25	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	12452.0	NM_001145955	230801.0	Mm.217004	NM_178698	ENSMUSG00000043257	Pigv	B330013B03|D430024F16Rik	phosphatidylinositol glycan anchor biosynthesis, class V	protein-coding	3.6490932709268	2.86130952268854	3.0148172899128	3.93269209608961	3.24459404249295	3.54481026856186	2.63406791688081	3.48039291328611	-0.284428586270312	0.636789535577583	0.982417279970648
Merged-chr15-67099017-3	chr15	67098927	67099127	+	928.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	77855.0	NM_009177	20442.0	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-61367964-2	chr18	61367864	61368064	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133249, intron 1 of 11)	intron (NM_133249, intron 1 of 11)	29936.0	NR_029879	723889.0		NR_029879	ENSMUSG00000105200	Mir378a	Mir378|Mirn378|mmu-mir-378|mmu-mir-378a	microRNA 378a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-46453529-3	chr17	46453424	46453624	+	894.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162864, intron 13 of 14)	intron (NM_001162864, intron 13 of 14)	-15047.0	NM_144856	108114.0	Mm.387538	NM_144856	ENSMUSG00000067144	Slc22a7	NLT|OAT2	solute carrier family 22 (organic anion transporter), member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-128160651-2	chr5	128160551	128160751	+	550.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172885, intron 2 of 8)	intron (NM_172885, intron 2 of 8)	272426.0	NM_172885	243274.0	Mm.447698	NM_172885	ENSMUSG00000034310	Tmem132d	C630028F04Rik	transmembrane protein 132D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-114556940-2	chr14	114556840	114557040	+	553.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-275025.0	NR_045661	75822.0	Mm.410813	NR_045661	ENSMUSG00000115320	4930524C18Rik	-	RIKEN cDNA 4930524C18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-24608611-2	chr16	24608511	24608711	+	919.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 5 of 12)	intron (NM_178665, intron 5 of 12)	79297.0	NR_038091	624582.0	Mm.439775	NR_038091		Morf4l1-ps1	A730098P11Rik	mortality factor 4 like 1, pseudogene 1	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-60838973-2	chr18	60838913	60839113	+	602.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011552, intron 4 of 24)	intron (NM_011552, intron 4 of 24)	9951.0	NM_011552	21453.0	Mm.486251	NM_011552	ENSMUSG00000024613	Tcof1	AA408847|AW209012|treacle	treacle ribosome biogenesis factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-52059737-4	chr16	52059656	52059856	+	874.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033238, intron 3 of 17)	intron (NM_001033238, intron 3 of 17)	28207.0	NM_001033238	208650.0	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-103400214-4	chr11	103400103	103400303	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183034, intron 2 of 11)	L1MB7|LINE|L1	12461.0	NM_183034	353047.0	Mm.18556	NM_183034	ENSMUSG00000034247	Plekhm1	AP162|B2|BC038943|D330036J23Rik	pleckstrin homology domain containing, family M (with RUN domain) member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-100865602-2	chr13	100865502	100865702	+	815.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32175.0	NM_022885	69048.0	Mm.402215	NM_022885	ENSMUSG00000021629	Slc30a5	1810010K08Rik|AF233321|ZNT5|ZTL1|ZnT-5|Zntl1	solute carrier family 30 (zinc transporter), member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-69086383-2	chr8	69086283	69086483	+	769.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153054, intron 1 of 16)	intron (NM_153054, intron 1 of 16)	-2353.0	NM_007509	11966.0	Mm.249096	NM_007509	ENSMUSG00000006273	Atp6v1b2	AI194269|AI790362|Atp6b2|HO57|R74844	ATPase, H+ transporting, lysosomal V1 subunit B2	protein-coding	0.775175287711869	0.818573442463443	1.46192351187441	1.62281735658345	1.34691970344855	0.821682929270017	1.34488895991746	1.72280231845114	0.434855578850265	0.761019797979058	0.998431161219273
Merged-chr13-35740334-3	chr13	35740246	35740446	+	680.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009881, intron 3 of 9)	intron (NM_009881, intron 3 of 9)	-1056.0	NM_001123386	12593.0	Mm.29002	NM_009881	ENSMUSG00000059288	Cdyl	AI325931	chromodomain protein, Y chromosome-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-33290304-4	chr4	33290196	33290396	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20015.0	NM_011884	24018.0	Mm.240024	NM_011884	ENSMUSG00000028274	Rngtt	AU020997|HCE|MCE1	RNA guanylyltransferase and 5'-phosphatase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-14807437-4	chr9	14807331	14807531	+	732.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310728, intron 9 of 18)	MTC|LTR|ERVL-MaLR	22777.0	NM_018736	17535.0	Mm.149071	NM_018736	ENSMUSG00000031928	Mre11a	Mre11|Mre11b	MRE11A homolog A, double strand break repair nuclease	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-121202566-2	chr5	121202488	121202688	+	671.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-1913.0	NM_011290	19988.0	Mm.262021	NM_011290	ENSMUSG00000029614	Rpl6	Taxreb107	ribosomal protein L6	protein-coding	-1.84456824087626	-1.81369603968745	-1.82303204814395	-1.83070092346192	-1.84240106943552	-1.51787681909439	-1.82091858046888	-1.82932819844659	1.64481029852639	0.639921510788462	1
Merged-chr8-64896966-4	chr8	64896866	64897066	+	825.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB7|LINE|L1	-47042.0	NM_178633	77113.0	Mm.350347	NM_178633	ENSMUSG00000031605	Klhl2	6030411N21Rik|8530402H02Rik|ABP-KELCH|AU020744|Mav	kelch-like 2, Mayven	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-84762677-4	chr12	84762585	84762785	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023409, intron 2 of 3)	intron (NM_023409, intron 2 of 3)	10427.0	NM_023409	67963.0	Mm.282556	NM_023409	ENSMUSG00000021242	Npc2	2700012J19Rik|AA408070|AU045843|HE1	NPC intracellular cholesterol transporter 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-100793353-2	chr10	100793253	100793453	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51718.0	NR_152765	102639396.0	Mm.404529	NR_152765		Gm35722	-	predicted gene, 35722	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-100633656-2	chr15	100633556	100633756	+	967.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033872, intron 2 of 3)	intron (NM_001033872, intron 2 of 3)	1903.0	NM_001285414	207818.0	Mm.26282	NM_174992	ENSMUSG00000053559	Smagp	-	small cell adhesion glycoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-90231803-4	chr11	90231696	90231896	+	974.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER103C|DNA|hAT-Charlie	-17680.0	NM_026178	67468.0	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-125640331-4	chr8	125640243	125640443	+	784.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	-29475.0	NM_028908	74393.0	Mm.41709	NM_028908	ENSMUSG00000050930	Map10	4933403G14Rik|AI835009|mKIAA1383	microtubule-associated protein 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-120848922-3	chr10	120848822	120849022	+	968.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177092, intron 4 of 6)	intron (NM_177092, intron 4 of 6)	-8707.0	NR_038023	100504616.0	Mm.451174	NR_038023	ENSMUSG00000087480	Gm15910	-	predicted gene 15910	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-20777678-1	chr4	20777578	20777778	+	838.0	f0_balb.idr	intron (NM_172987, intron 1 of 4)	intron (NM_172987, intron 1 of 4)	990.0	NM_001290410	269513.0	Mm.317473	NM_172987	ENSMUSG00000055761	Nkain3	C530048M05|E130310K16Rik	Na+/K+ transporting ATPase interacting 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-21981746-2	chr13	21981646	21981846	+	761.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001162928, exon 1 of 1)	exon (NM_001162928, exon 1 of 1)	552.0	NM_001162929	195236.0	Mm.204664	NM_001162928	ENSMUSG00000016982	Pom121l2	Gm24	POM121 membrane glycoprotein-like 2 (rat)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-48388638-3	chr9	48388542	48388742	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172921, intron 2 of 8)	RLTR19D|LTR|ERVK	26601.0	NM_172921	244853.0	Mm.325522	NM_172921	ENSMUSG00000044229	Nxpe4	C130036J11|D930028F11Rik|Fam55d	neurexophilin and PC-esterase domain family, member 4	protein-coding	0.106806779832034	0.646452454961087	0.825549999305826	0.779377371269885	0.1081167255168	0.12914555569435	0.122339776423977	0.116504441051844	-4.1853641043237	0.0441717538274971	1
Merged-chr7-25010002-2	chr7	25009902	25010102	+	578.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008168, exon 20 of 20)	3' UTR (NM_008168, exon 20 of 20)	-4065.0	NM_001290469	232975.0	Mm.44101	NM_144921	ENSMUSG00000040907	Atp1a3	Atpa-2	ATPase, Na+/K+ transporting, alpha 3 polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-57836954-4	chr9	57836856	57837056	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2722.0	NM_019689	56380.0	Mm.425588	NM_019689	ENSMUSG00000004661	Arid3b	Bdp|Dri2	AT rich interactive domain 3B (BRIGHT-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84686217-4	chr8	84686133	84686333	+	869.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025788, intron 1 of 5)	intron (NM_025788, intron 1 of 5)	1629.0	NM_025788	66830.0	Mm.289698	NM_025788	ENSMUSG00000001910	Nacc1	2010001H03Rik|4930511N13Rik|Btbd14b|Nac1	nucleus accumbens associated 1, BEN and BTB (POZ) domain containing	protein-coding	0.188632343103489	0.209195359121443	0.385110935886464	0.197288314826761	0.585068148659509	0.210705459862783	0.90249841139911	0.852072263547868	3.41402547517477	0.0827148364296758	1
Merged-chr11-62103642-4	chr11	62103548	62103748	+	911.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029936, intron 1 of 12)	MLT1G3|LTR|ERVL-MaLR	26624.0	NM_001029936	432572.0	Mm.438022	NM_001029936	ENSMUSG00000042331	Specc1	2810012G08Rik|B230396K10Rik|Cytsb	sperm antigen with calponin homology and coiled-coil domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-31006931-2	chr17	31006890	31007090	+	782.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_177465, intron 20 of 21)	intron (NM_177465, intron 20 of 21)	-50704.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	1.81792978953072	1.94133774745179	1.28333069234007	1.57491105636279	1.37321634061015	1.9565062500028	1.06752993953307	2.02476875139234	-0.0160225225255764	0.988732817428273	0.998431161219273
Merged-chr7-28437142-4	chr7	28437031	28437231	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022024)	promoter-TSS (NM_022024)	-316.0	NM_022024	63986.0	Mm.194536	NM_022024	ENSMUSG00000060791	Gmfg	0610039G16Rik|2310057N07Rik|AI324845	glia maturation factor, gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-137603946-4	chr4	137603852	137604052	+	898.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355588, intron 1 of 26)	intron (NM_001355588, intron 1 of 26)	9780.0	NM_130879	170707.0	Mm.218478	NM_130879	ENSMUSG00000043411	Usp48	2810449C13Rik|AI115503|BC021769|D330022K21Rik|Usp31	ubiquitin specific peptidase 48	protein-coding	3.18211423108018	3.24797178665719	2.6163949415007	1.59787913779074	2.98109723900028	1.95483955131966	1.37720383068019	2.3137285282105	-0.985739300066986	0.280639150620745	0.783412873231201
Merged-chr16-50482498-4	chr16	50482400	50482600	+	998.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16C|LTR|ERVL	-43745.0	NR_040380	619312.0	Mm.427671	NR_040379		G730013B05Rik	linc-Cblb|linc1610	RIKEN cDNA G730013B05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44965613-4	chr9	44965498	44965698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346698)	promoter-TSS (NM_001346698)	2.0	NM_001346698	140630.0	Mm.215069	NM_145400	ENSMUSG00000059890	Ube4a	4732444G18Rik|9930123J21Rik|UFD2b	ubiquitination factor E4A	protein-coding	6.21279285942483	6.37220892229893	4.65338123157852	6.40823128814806	5.97667166541648	5.95221529614198	5.488816794535	5.92514577402898	-0.239046822383699	0.454785130550903	0.919120493489568
Merged-chr2-165955478-2	chr2	165955378	165955578	+	788.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-37159.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-25134632-2	chr17	25134532	25134732	+	852.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011930, intron 1 of 24)	intron (NM_011930, intron 1 of 24)	1241.0	NM_011930	26373.0	Mm.270587	NM_011930	ENSMUSG00000036636	Clcn7	ClC-7|D17Wsu51e	chloride channel, voltage-sensitive 7	protein-coding	-0.0376761436658977	0.030205021288398	-0.176917641525818	-0.181001011696225	0.097734930618145	0.687800255986557	-0.175751965282732	-0.180287004189524	2.21077465154426	0.319619206221265	1
Merged-chr14-105221249-2	chr14	105221149	105221349	+	984.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37424.0	NM_029561	76273.0	Mm.290669	NM_029561	ENSMUSG00000053253	Ndfip2	0710001O20Rik|2810436B12Rik|9130207N19Rik|N4wbp5a|mKIAA1165	Nedd4 family interacting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-67992651-1	chr15	67992551	67992751	+	873.8333130000001	f0_balb.idr	Intergenic	MTB|LTR|ERVL-MaLR	266205.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-45038853-2	chr2	45038753	45038953	+	775.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355291, intron 2 of 9)	intron (NM_001355291, intron 2 of 9)	-15676.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-95953735-2	chr15	95953635	95953835	+	611.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 15 of 19)	intron (NM_175344, intron 15 of 19)	-123663.0	NR_155276	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-37144168-1	chr11	37144068	37144268	+	626.0	f0_balb.idr	Intergenic	Intergenic	-199927.0	NM_011856	23964.0	Mm.439889	NM_011856	ENSMUSG00000049336	Tenm2	Odz2|Odz3|Ten-2|Ten-m2	teneurin transmembrane protein 2	protein-coding	0.950374368695689	1.22187365915599	0.568926994363146	0.561691473710775	1.2429334558916	0.95992386609296	1.05980367407351	0.562958709347439	0.591831311645752	0.712790945036813	1
Merged-chr6-143220742-3	chr6	143220660	143220860	+	900.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25128.0	NR_027803	52285.0	Mm.354898	NM_001033129		D6Ertd474e	1700001I24Rik|AU023129	DNA segment, Chr 6, ERATO Doi 474, expressed	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28385499-2	chr7	28385399	28385599	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_026042, exon 4 of 4)	3' UTR (NM_026042, exon 4 of 4)	-6271.0	NM_011756	22695.0	Mm.389856	NM_011756	ENSMUSG00000044786	Zfp36	Gos24|Nup475|TIS11D|TISII|Tis11|Ttp|Zfp-36	zinc finger protein 36	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3962470-2	chr19	3962370	3962570	+	579.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028545, intron 1 of 9)	intron (NM_028545, intron 1 of 9)	3662.0	NM_028545	73458.0	Mm.482922	NM_028545	ENSMUSG00000037263	Aldh3b3	1700055N04Rik	aldehyde dehydrogenase 3 family, member B3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-31215359-2	chr8	31215258	31215458	+	564.0	f0_balb.idr|f1_balb.idr	intron (NM_001286425, intron 3 of 3)	intron (NM_001286425, intron 3 of 3)	28027.0	NM_001286425	171167.0	Mm.334477	NM_134161	ENSMUSG00000046152	Fut10	fuc-TX|fut10A	fucosyltransferase 10	protein-coding	2.06450987837909	2.73628671916016	1.44253658948162	1.40456297118121	2.44439975634145	2.91073930508029	1.45315753638825	1.41129258784071	0.424516577355249	0.682003801559537	0.995882295196263
Merged-chr17-85019109-4	chr17	85018991	85019191	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159497, intron 5 of 5)	intron (NM_001159497, intron 5 of 5)	-9256.0	NM_009205	20532.0	Mm.227176	NM_009205	ENSMUSG00000024131	Slc3a1	D2H|NBAT|NTAA|RBAT	solute carrier family 3, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-28412704-2	chr15	28412604	28412804	+	807.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133365, intron 65 of 78)	intron (NM_133365, intron 65 of 78)	208938.0	NM_133365	110082.0	Mm.248464	NM_133365	ENSMUSG00000022262	Dnah5	AU022615|Dnahc5|Mdnah5|b2b1134Clo|b2b1154Clo|b2b1537Clo|b2b1565Clo|b2b3491Clo|b2b601Clo|mKIAA1603	dynein, axonemal, heavy chain 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90542849-4	chr2	90542747	90542947	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	37800.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-88765876-3	chr13	88765783	88765983	+	906.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	-55589.0	NM_010103	13612.0	Mm.125580	NM_010103	ENSMUSG00000034488	Edil3	Del-1|Del1|Sox2-cre|Sox2Cre|Tg(Sox2-cre)1Amc	EGF-like repeats and discoidin I-like domains 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-70833793-3	chr9	70833691	70833891	+	723.138916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001324473, intron 1 of 8)	intron (NM_001324473, intron 1 of 8)	101017.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101620575-2	chr7	101620475	101620675	+	828.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39414.0	NM_019915	11872.0	Mm.57008	NM_019915	ENSMUSG00000030651	Art2b	ART2.2|ARTC2|Art|Ly92b|Rt-6|Rt6|Rt6-2	ADP-ribosyltransferase 2b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84200388-3	chr8	84200290	84200490	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr	Intergenic	Intergenic	-8128.0	NR_029740	387216.0		NR_029740	ENSMUSG00000065611	Mir23a	Mirn23a|mir-23a|mmu-mir-23a	microRNA 23a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-12289824-4	chr12	12289729	12289929	+	988.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029758, intron 2 of 12)	intron (NM_029758, intron 2 of 12)	27690.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-58543379-4	chr13	58543292	58543492	+	936.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	67485.0	NM_022317	114304.0	Mm.18188	NM_022317	ENSMUSG00000021553	Slc28a3	Cnt3	solute carrier family 28 (sodium-coupled nucleoside transporter), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-98168919-2	chr5	98168819	98169019	+	788.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11950.0	NM_029947	77630.0	Mm.332511	NM_029947	ENSMUSG00000035456	Prdm8	4930565F05Rik|PFM5	PR domain containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-119631893-4	chr13	119631792	119631992	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020279, intron 1 of 2)	CpG	8073.0	NM_020279	56838.0	Mm.143745	NM_020279	ENSMUSG00000074715	Ccl28	CCK1|MEC|Scya28	chemokine (C-C motif) ligand 28	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-81439476-4	chr6	81439384	81439584	+	878.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	456179.0	NR_106091	102465711.0		NR_106091	ENSMUSG00000106154	Mir7232	mmu-mir-7232	microRNA 7232	ncRNA	1.77104035930381	2.79156795773262	1.91817744301471	1.50120720997035	2.4268623215937	1.59489713622185	2.08562855296375	2.77812046154719	0.465689023612196	0.624673137620923	0.980870708702995
Merged-chr10-60360925-3	chr10	60360826	60361026	+	680.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028732, intron 3 of 6)	intron (NM_028732, intron 3 of 6)	14075.0	NM_028732	74048.0	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-111313053-3	chr8	111312964	111313164	+	676.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029005, intron 10 of 10)	intron (NM_029005, intron 10 of 10)	-12842.0	NM_146218	234736.0	Mm.334816	NM_146218	ENSMUSG00000033596	Rfwd3	BC027246	ring finger and WD repeat domain 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-53517285-2	chr19	53517185	53517385	+	560.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12033.0	NM_001085390	240672.0	Mm.482424	NM_001085390	ENSMUSG00000034765	Dusp5	Gm337	dual specificity phosphatase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-12270692-4	chr12	12270572	12270772	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146119, intron 1 of 11)	intron (NM_001146119, intron 1 of 11)	8533.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-9078986-1	chr13	9078886	9079086	+	544.0	f1_balb.idr	Intergenic	Intergenic	-14895.0	NM_001311117	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3237385-4	chr12	3237278	3237478	+	992.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_015551, exon 2 of 7)	non-coding (NR_015551, exon 2 of 7)	1587.0	NR_015551	74173.0	Mm.309774	NM_028796	ENSMUSG00000079179	Rab10os	1700012B15Rik|1810036A22Rik	RAB10, member RAS oncogene family, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-23923245-2	chr1	23923145	23923345	+	653.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028534)	promoter-TSS (NM_028534)	-864.0	NM_028534	98366.0	Mm.329963	NM_028534	ENSMUSG00000026155	Smap1	1700056O10Rik|4921514B13Rik|4921525H11Rik|AI462175	small ArfGAP 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-156210145-4	chr4	156210059	156210259	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-5768.0	NM_172417	74183.0	Mm.431343	NM_172417	ENSMUSG00000078486	Perm1	2310042D19Rik	PPARGC1 and ESRR induced regulator, muscle 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80099196-2	chr10	80099096	80099296	+	909.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359637, intron 1 of 3)	intron (NM_001359637, intron 1 of 3)	1991.0	NM_001359635	216161.0	Mm.262102	NM_183426	ENSMUSG00000035673	Sbno2	BC019206|F730040C21|Sno|Stno	strawberry notch 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46552891-2	chr8	46552791	46552991	+	580.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027973, intron 1 of 12)	B1_Mus1|SINE|Alu	822.0	NM_027973	71876.0	Mm.22108	NM_027973	ENSMUSG00000031629	Cenpu	1700029A22Rik|Mlf1ip	centromere protein U	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-33406829-2	chr2	33406729	33406929	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001276332, exon 2 of 2)	3' UTR (NM_001276332, exon 2 of 2)	24495.0	NM_001085507	241311.0	Mm.296512	NM_001085507	ENSMUSG00000068966	Zbtb34	Gm349|mKIAA1993	zinc finger and BTB domain containing 34	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-55514906-4	chr4	55514806	55515006	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	17569.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	6.41631155763205	5.38211346845494	6.41384347082059	5.08613611218099	6.15429429924798	5.92516539265204	5.90365824931445	5.53683912360832	-0.0626928827807235	0.841503000469964	0.998431161219273
Merged-chr16-23270803-2	chr16	23270703	23270903	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252505, intron 2 of 7)	intron (NM_001252505, intron 2 of 7)	-19667.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-68357638-2	chr7	68357538	68357738	+	750.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013811, intron 7 of 8)	intron (NM_001013811, intron 7 of 8)	-59786.0	NR_046208	71244.0	Mm.410787	NR_046208	ENSMUSG00000108924	4933436H12Rik	-	RIKEN cDNA 4933436H12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-14751947-8	chr9	14751850	14752050	+	904.7152710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010242, exon 1 of 1)	exon (NM_010242, exon 1 of 1)	172.0	NM_010242	14345.0	Mm.63450	NM_010242	ENSMUSG00000049307	Fut4	AI451562|CD15|FAL|FucT-IV|LeX|SSEA-1|Ssea1	fucosyltransferase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-26977574-1	chr14	26977474	26977674	+	544.0	f1_balb.idr	Intergenic	RMER17C|LTR|ERVK	-7023.0	NM_145221	72993.0	Mm.202322	NM_145221	ENSMUSG00000040760	Appl1	2900057D21Rik|7330406P05Rik|AI585782|AW209077|BB022931|C88264|DIP13	adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-119800268-2	chr12	119800168	119800368	+	995.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F|LINE|L1	-145694.0	NM_001294154	217951.0	Mm.387395	NM_001160385	ENSMUSG00000048004	Tmem196	Gm528	transmembrane protein 196	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-23416725-3	chr11	23416627	23416827	+	950.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001190401, intron 35 of 79)	L1MC4|LINE|L1	81312.0	NM_001290655	268390.0	Mm.13148	NM_172391	ENSMUSG00000020288	Ahsa2	-	AHA1, activator of heat shock protein ATPase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124493520-2	chr6	124493420	124493620	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_181344, intron 1 of 5)	intron (NM_181344, intron 1 of 5)	407.0	NM_181344	232371.0	Mm.132974	NM_181344	ENSMUSG00000038527	C1rl	C1r-LP|C1rl1|C1rlp	complement component 1, r subcomponent-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-45407784-4	chr4	45407694	45407894	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001009949, intron 1 of 2)	intron (NM_001009949, intron 1 of 2)	972.0	NM_001009949	230125.0	Mm.260210	NM_001009949	ENSMUSG00000045973	Slc25a51	9130208E07Rik|D130005A03Rik|Gm138|Mcart1	solute carrier family 25, member 51	protein-coding	2.67459504833171	3.3690243675126	4.1298844206233	2.83010319271647	3.2730556488663	3.28865533113579	4.11009996005038	3.35759061301529	0.269599341738828	0.658501088148275	0.988837901047746
Merged-chr14-45220500-7	chr14	45220349	45220549	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027518, intron 1 of 6)	CpG	732.0	NM_027518	70713.0	Mm.343793	NM_027518	ENSMUSG00000049092	Gpr137c	6330416L11Rik|Gm908|TM7SF1L2	G protein-coupled receptor 137C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-121033469-3	chr10	121033328	121033528	+	779.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011915)	promoter-TSS (NM_011915)	-576.0	NM_011915	24117.0	Mm.32831	NM_011915	ENSMUSG00000020218	Wif1	AW107799|WIF-1	Wnt inhibitory factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-75209850-2	chr1	75209750	75209950	+	578.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011494)	promoter-TSS (NM_011494)	928.0	NM_029010	74577.0	Mm.458319	NM_029010	ENSMUSG00000026200	Glb1l	4833408P15Rik	galactosidase, beta 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-143758263-4	chr5	143758169	143758369	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015486)	promoter-TSS (NR_015486)	-85.0	NR_015486	320064.0	Mm.332820	NR_015486		D130017N08Rik	1700012G11Rik	RIKEN cDNA D130017N08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-4593642-4	chr2	4593530	4593730	+	995.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177844, intron 5 of 11)	intron (NM_001177844, intron 5 of 11)	33876.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152634536-2	chr1	152634436	152634636	+	589.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346118, intron 2 of 18)	intron (NM_001346118, intron 2 of 18)	-9319.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-108917018-2	chr3	108916918	108917118	+	664.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5289.0	NM_001356292	66921.0	Mm.51049	NM_025845	ENSMUSG00000027881	Prpf38b	1110021E09Rik|AU018955	PRP38 pre-mRNA processing factor 38 (yeast) domain containing B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-54360991-7	chr14	54360900	54361100	+	981.0285640000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026936, intron 1 of 9)	CpG	159.0	NM_026936	69089.0	Mm.182340	NM_026936	ENSMUSG00000000959	Oxa1l	1810020M02Rik|AI894287	oxidase assembly 1-like	protein-coding	3.98910262239566	4.06218983191488	4.46254382068039	4.60773923979458	4.02102153541571	4.47712412261079	3.88233052578284	4.36789912784247	-0.133035947330676	0.750069141566337	0.998431161219273
Merged-chr16-91478320-4	chr16	91478226	91478426	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-6889.0	NM_010508	15975.0	Mm.502	NM_010508	ENSMUSG00000022967	Ifnar1	Ifar|Ifnar|Ifrc|Infar	interferon (alpha and beta) receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91056234-4	chr16	91056136	91056336	+	968.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_028905, exon 3 of 3)	exon (NM_028905, exon 3 of 3)	-11857.0	NR_152264	67367.0	Mm.347	NM_026110	ENSMUSG00000022974	Paxbp1	1810007M14Rik|C21orf66|Gcfc|Gcfc1|Pax3/7bp	PAX3 and PAX7 binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71836067-2	chr17	71836019	71836219	+	871.416626	f0_balb.idr|f1_balb.idr	intron (NM_001271483, intron 13 of 16)	intron (NM_001271483, intron 13 of 16)	54172.0	NM_030179	78785.0	Mm.196382	NM_030179	ENSMUSG00000024059	Clip4	1700024K14Rik|1700074B05Rik|4833417L20Rik|5830409B12Rik|Rsnl2	CAP-GLY domain containing linker protein family, member 4	protein-coding	1.7146232981048	1.1690861379863	1.12066293936944	1.08085562070439	2.90288485630926	3.20680385948392	3.80303913222806	2.17749191275774	4.4396632669655	7.66435432080507e-05	0.00249431075427719
Merged-chr18-69585403-3	chr18	69585300	69585500	+	892.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 8 of 19)	intron (NM_001361128, intron 8 of 19)	239240.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-88310522-2	chr1	88310422	88310622	+	592.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_134252, intron 2 of 26)	intron (NM_134252, intron 2 of 26)	3810.0	NM_134252	171382.0	Mm.218753	NM_134252	ENSMUSG00000036251	Trpm8	CMR1|LTRPC6|LTrpC-6|TRPP8|Trp-p8	transient receptor potential cation channel, subfamily M, member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-126004202-4	chr4	126004089	126004289	+	950.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20470.0	NR_045561	12986.0	Mm.271701	NM_007782	ENSMUSG00000028859	Csf3r	Cd114|Csfgr|G-CSF-R|G-CSFR	colony stimulating factor 3 receptor (granulocyte)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-83566236-4	chr7	83566122	83566322	+	962.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18709.0	NM_177695	233424.0	Mm.486619	NM_177695	ENSMUSG00000038540	Tmc3	9030203A06	transmembrane channel-like gene family 3	protein-coding	2.26610372257214	2.34528355138296	1.21380442481157	1.18883395144925	2.77063508019728	2.47604523735575	2.16018789384472	1.64142336388165	1.06742595551744	0.310180321122443	0.811029382426356
Merged-chr4-40757251-2	chr4	40757161	40757361	+	663.5	f0_balb.idr|f0_c57.idr	intron (NM_021535, intron 1 of 11)	intron (NM_021535, intron 1 of 11)	624.0	NM_021535	74255.0	Mm.289929	NM_021535	ENSMUSG00000028409	Smu1	2600001O03Rik|2610203K23Rik|AB044414|AI845086|AW556129|Bwd	smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-124385803-3	chr2	124385719	124385919	+	849.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290997, intron 3 of 20)	intron (NM_001290997, intron 3 of 20)	-163461.0	NR_040612	75946.0	Mm.415059	NR_040612	ENSMUSG00000086954	4930583P06Rik	-	RIKEN cDNA 4930583P06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80475475-4	chr10	80475392	80475592	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-19414.0	NM_139226	246086.0	Mm.250572	NM_139226	ENSMUSG00000045518	Onecut3	OC-3|Oc3	one cut domain, family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83795081-4	chr6	83794971	83795171	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019542)	promoter-TSS (NM_019542)	14.0	NM_019542	56174.0	Mm.190650	NM_019542	ENSMUSG00000034744	Nagk	Gnk	N-acetylglucosamine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-21499556-5	chr14	21499572	21499772	+	891.330017	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001205241)	promoter-TSS (NM_001205241)	-98.0	NM_001205241	54169.0	Mm.248967	NM_017479	ENSMUSG00000021767	Kat6b	AI507552|B130044K16Rik|MYST-4|Morf|Myst4|mKIAA0383|qkf|querkopf	K(lysine) acetyltransferase 6B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129306682-4	chr2	129306594	129306794	+	865.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040371, exon 5 of 5)	non-coding (NR_040371, exon 5 of 5)	3278.0	NM_010554	16175.0	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117418833-6	chr10	117418739	117418939	+	983.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28596.0	NR_152734	102634600.0	Mm.399106	NR_152734	ENSMUSG00000112344	Gm32141	-	predicted gene, 32141	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-78792742-4	chr11	78792657	78792857	+	851.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33838.0	NM_001076681	66274.0	Mm.258932	NM_001076681	ENSMUSG00000072640	Lyrm9	1810012P15Rik	LYR motif containing 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41341820-4	chr19	41341718	41341918	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 2 of 16)	intron (NM_031376, intron 2 of 16)	43252.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-100487237-2	chr3	100487137	100487337	+	731.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001142952, intron 1 of 1)	intron (NM_001142952, intron 1 of 1)	1955.0	NM_001142952	74645.0	Mm.226900	NM_001142952	ENSMUSG00000044468	Fam46c	4930431B09Rik|AI449797	family with sequence similarity 46, member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-32230207-2	chr11	32230107	32230307	+	765.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010822, intron 3 of 3)	intron (NM_010822, intron 3 of 3)	3702.0	NM_010822	268395.0	Mm.263161	NM_010822	ENSMUSG00000020287	Mpg	9830006D05|AI326268|APNG|Aag|Mid1	N-methylpurine-DNA glycosylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-93012803-2	chr1	93012703	93012903	+	796.25	f1_balb.idr|f1_c57bl6.idr	TTS (NM_177587)	TTS (NM_177587)	6469.0	NM_177587	208760.0	Mm.235537	NM_177587	ENSMUSG00000045091	Aqp12	AB084104|mAQP12	aquaporin 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-92847959-4	chr16	92847865	92848065	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21891.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-9342256-3	chr3	9342152	9342352	+	926.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CAAAAA)n|Simple_repeat|Simple_repeat	-60826.0	NR_015499	320088.0	Mm.212908	NR_015499	ENSMUSG00000097365	C030034L19Rik	A130044O20Rik	RIKEN cDNA C030034L19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127570549-3	chr10	127570465	127570665	+	918.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 34 of 88)	intron (NM_008512, intron 34 of 88)	-36006.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	-0.973751987129437	-1.32050219810158	-1.33037402876891	-1.18315408055446	-1.34982315712777	-1.31836293121464	-1.32813926269019	-1.33703153448275	-2.1786833831128	0.521980837664253	1
Merged-chr4-116789139-4	chr4	116789043	116789243	+	794.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146151, intron 4 of 10)	intron (NM_146151, intron 4 of 10)	18416.0	NM_026654	68276.0	Mm.30534	NM_026654	ENSMUSG00000028688	Toe1	4930584N22Rik|4933424D16Rik|AI413517	target of EGR1, member 1 (nuclear)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-15761429-4	chr17	15761350	15761550	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007690, intron 30 of 35)	intron (NM_007690, intron 30 of 35)	56483.0	NM_007690	12648.0	Mm.8137	NM_007690	ENSMUSG00000023852	Chd1	4930525N21Rik|AI851787|AW555109	chromodomain helicase DNA binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-111726352-4	chr8	111726268	111726468	+	964.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009954, intron 1 of 6)	intron (NM_009954, intron 1 of 6)	5768.0	NM_001198839	12927.0	Mm.3758	NM_009954	ENSMUSG00000031955	Bcar1	AI385681|Cas|Crkas	breast cancer anti-estrogen resistance 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-7029986-2	chr19	7029886	7030086	+	548.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016737, intron 5 of 13)	intron (NM_016737, intron 5 of 13)	10040.0	NM_016737	20867.0	Mm.258633	NM_016737	ENSMUSG00000024966	Stip1	Hop|Sti1|p60	stress-induced phosphoprotein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-129403943-4	chr7	129403935	129404135	+	944.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	146941.0	NM_001080963	381925.0	Mm.39184	NM_001080963	ENSMUSG00000070366	Plpp4	C030048B12Rik|Gm1090|Ppapdc1a	phospholipid phosphatase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-20078621-4	chr14	20078515	20078715	+	794.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026209, intron 1 of 1)	intron (NM_026209, intron 1 of 1)	4557.0	NM_026209	67509.0	Mm.292423	NM_026209	ENSMUSG00000045107	Saysd1	1810063B07Rik|4930488P03Rik	SAYSVFN motif domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65196702-6	chr9	65196623	65196823	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17967.0	NM_177460	214424.0	Mm.31129	NM_177460	ENSMUSG00000032392	Parp16	ARTD15|BC055447|C79952|PARP-16	poly (ADP-ribose) polymerase family, member 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-116201992-2	chr6	116201892	116202092	+	832.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_131013, intron 3 of 3)	intron (NR_131013, intron 3 of 3)	6001.0	NR_131013	78739.0	Mm.417032	NR_131013	ENSMUSG00000108030	9530062K07Rik	-	RIKEN cDNA 9530062K07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-59802993-3	chr2	59802924	59803124	+	748.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290659, intron 13 of 25)	intron (NM_001290659, intron 13 of 25)	79582.0	NM_001159636	72137.0	Mm.288734	NM_028118	ENSMUSG00000026988	Wdsub1	1700048E19Rik|2610014F08Rik	WD repeat, SAM and U-box domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-52129922-3	chr1	52129849	52130049	+	587.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205313, intron 5 of 24)	intron (NM_001205313, intron 5 of 24)	10327.0	NM_001205313	20846.0	Mm.277406	NM_009283	ENSMUSG00000026104	Stat1	2010005J02Rik|AA408197	signal transducer and activator of transcription 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-11887587-2	chr11	11887487	11887687	+	783.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001190448, intron 1 of 14)	intron (NM_001190448, intron 1 of 14)	2821.0	NM_016672	13195.0	Mm.12906	NM_016672	ENSMUSG00000020182	Ddc	Aadc	dopa decarboxylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-100517921-4	chr13	100517841	100518041	+	894.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360539, intron 2 of 6)	intron (NM_001360539, intron 2 of 6)	-25332.0	NM_022011	23894.0	Mm.272533	NM_022011	ENSMUSG00000021639	Gtf2h2	44kDa|BTF2 p44|BTF2-p44|Btf2p44|p44	general transcription factor II H, polypeptide 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-45529556-1	chr19	45529456	45529656	+	542.0	f1_c57bl6.idr	3' UTR (NM_009771, exon 14 of 14)	3' UTR (NM_009771, exon 14 of 14)	31008.0	NM_001330506	56626.0	Mm.46509	NM_020032	ENSMUSG00000025218	Poll	1110003P06Rik|AV007317	polymerase (DNA directed), lambda	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-66834137-2	chr9	66834037	66834237	+	789.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_026674, intron 1 of 5)	intron (NM_026674, intron 1 of 5)	569.0	NM_026674	68318.0	Mm.284229	NM_026674	ENSMUSG00000053040	Aph1c	0610008A10Rik|APH-1b|Aph1b	aph1 homolog C, gamma secretase subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-37660012-3	chr3	37659881	37660081	+	680.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20034.0	NM_011896	24063.0	Mm.330986	NM_011896	ENSMUSG00000037211	Spry1	sprouty1|spry-1	sprouty RTK signaling antagonist 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-38810504-3	chr6	38810394	38810594	+	722.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010433, intron 2 of 14)	B1F|SINE|Alu	26817.0	NM_001136065	15258.0	Mm.23790	NM_010433	ENSMUSG00000061436	Hipk2	1110014O20Rik|B230339E18Rik|Stank	homeodomain interacting protein kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129380385-4	chr2	129380296	129380496	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR18D_MM|LTR|ERVK	-9257.0	NM_008361	16176.0	Mm.222830	NM_008361	ENSMUSG00000027398	Il1b	IL-1beta|Il-1b	interleukin 1 beta	protein-coding	5.46147427827067	5.1460224770927	6.27002031300921	6.09943469991341	5.97338110167101	5.18094578854833	6.20365999776193	6.38714549355447	0.211187316014985	0.497035568317124	0.936897994490085
Merged-chr2-155764894-4	chr2	155764881	155765081	+	938.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10361.0	NM_010808	17391.0	Mm.389325	NM_010808	ENSMUSG00000027612	Mmp24	AU040325|MMP-21|MT5-MMP|MT5MMP|MTMMP5	matrix metallopeptidase 24	protein-coding	2.22009260602741	1.58665088187652	2.50515689519626	1.86070375283341	1.91727122973019	2.51386040984605	2.61346279796797	1.51214581172925	0.294895033817942	0.754495457212659	0.998431161219273
Merged-chr10-44596195-4	chr10	44596104	44596304	+	830.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-137456.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-38663056-3	chr6	38662956	38663156	+	861.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001101507)	promoter-TSS (NM_001101507)	-13.0	NM_001101507	665180.0	Mm.349066	NM_001101507	ENSMUSG00000079598	Clec2l	AI414054|AW122724|Gm1064	C-type lectin domain family 2, member L	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24469181-1	chr17	24469081	24469281	+	572.0	f1_balb.idr	Intergenic	B2_Mm1a|SINE|B2	-1292.0	NM_025954	67078.0	Mm.28541	NM_025954	ENSMUSG00000043445	Pgp	1700012G19Rik|AI481330|AUM|G3PP	phosphoglycolate phosphatase	protein-coding	0.939661111469592	2.49518192351008	1.97449838937707	1.62483770452555	0.946120857004054	1.33149674459364	2.85859360692154	1.63433078345002	0.127393247834725	0.915173236606809	0.998431161219273
Merged-chr7-100498224-2	chr7	100498124	100498324	+	866.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_011671, exon 5 of 8)	exon (NM_011671, exon 5 of 8)	4866.0	NM_011671	22228.0	Mm.171378	NM_011671	ENSMUSG00000033685	Ucp2	Slc25a8|UCP 2|UCPH	uncoupling protein 2 (mitochondrial, proton carrier)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-51865205-4	chr12	51865101	51865301	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35665.0	NM_144788	207304.0	Mm.249391	NM_144788	ENSMUSG00000035247	Hectd1	A630086P08Rik|AI844876|b2b327Clo|opm	HECT domain E3 ubiquitin protein ligase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-52949462-4	chr2	52949341	52949541	+	898.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	91573.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-84089269-8	chr18	84089096	84089296	+	876.2604369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146090, intron 1 of 1)	intron (NM_146090, intron 1 of 1)	1038.0	NM_146090	225791.0	Mm.147052	NM_146090	ENSMUSG00000049090	Zadh2	C530046K17Rik|PTGR-3|Pthr3	zinc binding alcohol dehydrogenase, domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-136657697-1	chr1	136657597	136657797	+	1000.0	f0_balb.idr	Intergenic	Intergenic	-25699.0	NR_045324	100503460.0	Mm.30630	NR_045324	ENSMUSG00000097113	Gm19705	-	predicted gene, 19705	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-95117200-2	chr11	95117100	95117300	+	864.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2917.0	NM_010055	13393.0	Mm.5194	NM_010055	ENSMUSG00000001510	Dlx3	AV237891|Dlx-3	distal-less homeobox 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-90811421-2	chr13	90811321	90811521	+	637.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	93934.0	NM_001145879	435376.0	Mm.292579	NM_001145879	ENSMUSG00000078958	Atp6ap1l	EG435376	ATPase, H+ transporting, lysosomal accessory protein 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-125282511-4	chr2	125282394	125282594	+	842.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34979.0	NM_023595	110074.0	Mm.282499	NM_023595	ENSMUSG00000027203	Dut	5031412I06Rik|5133400F09Rik|D2Bwg0749e|Dutp|dUTPase	deoxyuridine triphosphatase	protein-coding	-1.10196567847608	-1.08028584652754	-0.917702588917093	-0.563040453510935	-1.10147851642621	-1.07784325022935	-1.08900578035492	-1.09834132469131	-2.70815443805545	0.396673806156447	1
Merged-chr11-109011901-4	chr11	109011834	109012034	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	91585.0	NM_015732	12006.0	Mm.71710	NM_015732	ENSMUSG00000000142	Axin2	Axi1|Axil|Conductin	axin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-152027725-4	chr4	152027611	152027811	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133879)	promoter-TSS (NM_133879)	-40.0	NM_133879	100090.0	Mm.24661	NM_133879	ENSMUSG00000028952	Zbtb48	0610011D15Rik|AI327031|Hkr3|TZAP	zinc finger and BTB domain containing 48	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-100336058-4	chr6	100335956	100336156	+	848.2666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR81|LTR|Gypsy	-48698.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-110689513-4	chr7	110689418	110689618	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61861.0	NM_009627	11535.0	Mm.1408	NM_009627	ENSMUSG00000030790	Adm	AM	adrenomedullin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-154932985-4	chr4	154932889	154933089	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4912.0	NM_178931	230979.0	Mm.215147	NM_178931	ENSMUSG00000042333	Tnfrsf14	Atar|HveA|Hvem|Tnfrs14	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	protein-coding	3.86671135536628	3.44480399718933	3.85597712570337	3.5135606226605	3.84140441607806	4.33926255836231	4.46064592878548	4.29038233134194	0.775703366383921	0.0855409364800811	0.449089916520426
Merged-chr10-99926772-4	chr10	99926680	99926880	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-89041.0	NM_001347156	17311.0	Mm.45124	NM_013598	ENSMUSG00000019966	Kitl	Clo|Con|Gb|Kitlg|Mgf|SCF|SF|SLF|Sl|blz|contrasted	kit ligand	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43469621-4	chr4	43469509	43469709	+	840.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	14100.0	NM_019436	54390.0	Mm.31775	NM_019436	ENSMUSG00000028460	Sit1	Sit	suppression inducing transmembrane adaptor 1	protein-coding	1.50557543994888	1.45878514129827	0.90570894427632	1.48696086034106	1.51874372718382	1.46989007686558	0.908647176041319	1.49496417882864	0.0367596136942501	0.97731143424222	0.998431161219273
Merged-chr9-95750319-4	chr9	95750185	95750385	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311123)	promoter-TSS (NM_001311123)	73.0	NM_001311123	22063.0	Mm.149633	NM_011643	ENSMUSG00000032839	Trpc1	Mtrp1|Trp1|Trrp1	transient receptor potential cation channel, subfamily C, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90673493-4	chr2	90673395	90673595	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3720.0	NM_021512	59015.0	Mm.24532	NM_021512	ENSMUSG00000051329	Nup160	160kDa|2810011M03Rik|AA414952|AU020188|Gtl-13|Gtl1-13|Gtl13|mKIAA0197	nucleoporin 160	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-119920640-4	chr7	119920564	119920764	+	899.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20553.0	NR_126475	73919.0	Mm.46381	NM_029610	ENSMUSG00000030922	Lyrm1	1110065L10Rik|2310004B22Rik|4930404J24Rik	LYR motif containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128967256-4	chr2	128967150	128967350	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178404)	promoter-TSS (NM_178404)	-152.0	NM_178404	78751.0	Mm.26377	NM_178404	ENSMUSG00000042851	Zc3h6	4631426G04Rik|4833425H18Rik|AU024389|AW060453|Zc3hdc6|mKIAA2035	zinc finger CCCH type containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-69588620-4	chr18	69588521	69588721	+	775.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 8 of 19)	intron (NM_001361128, intron 8 of 19)	242461.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-36043963-2	chr17	36043863	36044063	+	812.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_001034909, intron 1 of 2)	intron (NM_001034909, intron 1 of 2)	1002.0	NM_001034909	547347.0	Mm.484641	NM_001034909	ENSMUSG00000073407	Gm6034	EG547347|H2-gs14-2	predicted gene 6034	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80853588-2	chr7	80853488	80853688	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8520.0	NM_009553	22691.0	Mm.358645	NM_009553	ENSMUSG00000038797	Zscan2	Zfp-29|Zfp29	zinc finger and SCAN domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-63401171-4	chr4	63401077	63401277	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045514, intron 1 of 21)	intron (NM_001045514, intron 1 of 21)	2268.0	NM_001045514	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-119782517-2	chr3	119782417	119782617	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310711, intron 1 of 13)	intron (NM_001310711, intron 1 of 13)	871.0	NM_001310711	56195.0	Mm.29966	NM_019550	ENSMUSG00000028134	Ptbp2	Ptb2|brPTB|nPTB	polypyrimidine tract binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-75855898-2	chr7	75855798	75855998	+	887.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029652, intron 1 of 2)	intron (NM_029652, intron 1 of 2)	7560.0	NM_029652	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-51417952-4	chr13	51417853	51418053	+	960.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010101, intron 1 of 1)	intron (NM_010101, intron 1 of 1)	9335.0	NM_010101	13610.0	Mm.136736	NM_010101	ENSMUSG00000067586	S1pr3	AI132464|Edg3|Lpb3|S1p3	sphingosine-1-phosphate receptor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-3515935-2	chr8	3515835	3516035	+	929.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359123)	promoter-TSS (NM_001359123)	551.0	NM_015801	50767.0	Mm.23085	NM_015801	ENSMUSG00000004565	Pnpla6	AI661849|MSws|Nte	patatin-like phospholipase domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-62812553-2	chr9	62812453	62812653	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010193)	promoter-TSS (NM_010193)	-905.0	NM_010193	14155.0	Mm.24069	NM_010193	ENSMUSG00000032244	Fem1b	mKIAA0396	feminization 1 homolog b (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-80076994-4	chr15	80076941	80077141	+	780.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_013762)	TTS (NM_013762)	1538.0	NR_028282	100302601.0		NR_028282	ENSMUSG00000077734	Snord83b	MBII-10	small nucleolar RNA, C/D box 83B	snoRNA	2.71320850298122	2.64252807642531	2.95007790502265	3.06938360646996	3.02254237170783	2.95399039575039	3.65475680891058	4.01633830643072	1.06759827469029	0.0867252605766981	0.452666622563467
Merged-chr11-87853800-2	chr11	87853700	87853900	+	862.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_001039684, exon 2 of 18)	exon (NM_001039684, exon 2 of 18)	575.0	NM_001039684	380718.0	Mm.24404	NM_001039684	ENSMUSG00000034121	Mks1	AK190930|B8d3|avc6	Meckel syndrome, type 1	protein-coding	-2.18361151404719	-2.02201993626881	-2.16403530460334	-2.1710062446989	-2.18164157430194	-2.15370992785044	-2.16211418110791	-2.16975844975469	-0.683654500252594	0.846597994014493	1
Merged-chr6-124721027-2	chr6	124720927	124721127	+	954.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077705, intron 15 of 15)	intron (NM_001077705, intron 15 of 15)	-2637.0	NR_029792	723944.0		NR_029792	ENSMUSG00000065462	Mir200c	Mirn200c|mir-200c	microRNA 200c	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5715997-2	chr19	5715897	5716097	+	636.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_053252, exon 12 of 19)	exon (NM_053252, exon 12 of 19)	10320.0	NM_001114595	114601.0	Mm.210447	NM_053252	ENSMUSG00000024937	Ehbp1l1	G430002G23Rik	EH domain binding protein 1-like 1	protein-coding	-0.61702243745495	-0.607035559936551	-0.610320332445244	-0.0970814891698997	-0.475649907265772	-0.256245023033334	-0.609596919199087	-0.612405393885242	-0.25076176607119	0.926046165889952	1
Merged-chr6-35537968-2	chr6	35537868	35538068	+	804.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008098, intron 1 of 3)	intron (NM_008098, intron 1 of 3)	1920.0	NM_008098	14489.0	Mm.182746	NM_008098	ENSMUSG00000029840	Mtpn	5033418D15Rik|Gcdp|V1	myotrophin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-134555672-4	chr5	134555567	134555767	+	909.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3233.0	NM_009990	269713.0	Mm.255138	NM_009990	ENSMUSG00000063146	Clip2	B230327O20|CLIP-115|Clip1|Cyln2|WSCR4|mKIAA0291|wbscr4	CAP-GLY domain containing linker protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-121762813-2	chr9	121762713	121762913	+	635.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_001166644, exon 2 of 6)	exon (NM_001166644, exon 2 of 6)	2780.0	NM_001166644	270210.0	Mm.473702	NM_001166644	ENSMUSG00000013419	Zfp651	4732420M22Rik|BC030045|R74626	zinc finger protein 651	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-172423589-4	chr1	172423474	172423674	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28B|LTR|ERVL	47043.0	NM_026234	67556.0	Mm.26612	NM_026234	ENSMUSG00000050229	Pigm	4933437L05Rik|AI644422|AV302080|C920011G20Rik	phosphatidylinositol glycan anchor biosynthesis, class M	protein-coding	6.11618342748611	5.9141873080725	6.50310253468774	6.79748559092351	5.45333496756119	5.84786129349655	5.63045549897497	4.54113557528115	-1.03428891600032	0.000495367765768432	0.0110472536313934
Merged-chr18-42792227-4	chr18	42792135	42792335	+	884.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028392, intron 1 of 8)	intron (NM_028392, intron 1 of 8)	107271.0	NR_073583	72930.0	Mm.26134	NM_027531	ENSMUSG00000024500	Ppp2r2b	2900026H06Rik|6330404L05Rik|E130009M08Rik|PP2A-PR55B|PR55-BETA|SCA12	protein phosphatase 2, regulatory subunit B, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-77924002-4	chr9	77923903	77924103	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134255, intron 1 of 7)	intron (NM_134255, intron 1 of 7)	6638.0	NM_134255	68801.0	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	3.20612768819866	3.33483563915707	4.70104303624728	1.81912968111147	3.31394549832934	3.36121863685347	4.66674751042461	1.83184794352846	0.008577532999295	0.994148493610487	0.998431161219273
Merged-chr4-154929571-4	chr4	154929453	154929653	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-1476.0	NM_178931	230979.0	Mm.215147	NM_178931	ENSMUSG00000042333	Tnfrsf14	Atar|HveA|Hvem|Tnfrs14	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-73350526-4	chr8	73350434	73350634	+	805.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001317391, intron 1 of 15)	intron (NM_001317391, intron 1 of 15)	3006.0	NM_001317391	16795.0	Mm.324371	NM_010687	ENSMUSG00000004383	Large1	BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd	LARGE xylosyl- and glucuronyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-168250453-3	chr2	168250356	168250556	+	849.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18875.0	NM_001081134	241794.0	Mm.425102	NM_001081134	ENSMUSG00000074575	Kcng1	AW536275	potassium voltage-gated channel, subfamily G, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-43077182-4	chr17	43077058	43077258	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178589, intron 4 of 5)	intron (NM_178589, intron 4 of 5)	60603.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-73098922-2	chr14	73098822	73099022	+	915.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43588.0	NM_001170694	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-87326267-2	chr17	87326167	87326367	+	684.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028639, intron 8 of 19)	intron (NM_028639, intron 8 of 19)	43381.0	NM_028639	225049.0	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-24345269-4	chr2	24345173	24345373	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159562)	promoter-TSS (NM_001159562)	-18.0	NM_001159562	16181.0	Mm.882	NM_031167	ENSMUSG00000026981	Il1rn	F630041P17Rik|IL-1ra	interleukin 1 receptor antagonist	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-81107641-4	chr13	81107547	81107747	+	896.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 87 of 89)	intron (NM_054053, intron 87 of 89)	143573.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28317591-2	chr17	28317491	28317691	+	600.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001163820, exon 5 of 9)	exon (NM_001163820, exon 5 of 9)	4061.0	NM_001163820	72775.0	Mm.201859	NM_028348	ENSMUSG00000007570	Fance	2810451D06Rik|AI415634|AW209126	Fanconi anemia, complementation group E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-141043876-2	chr5	141043776	141043976	+	753.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-43280.0	NM_175362	108723.0	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-70095979-2	chr10	70095879	70096079	+	941.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1142.0	NM_001111121	76551.0	Mm.281741	NM_001111121	ENSMUSG00000048701	Ccdc6	2810012H18Rik|AA536681|AA960498|AW061011	coiled-coil domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-68914766-1	chr11	68914666	68914866	+	566.0	f1_c57bl6.idr	Intergenic	L1MC4|LINE|L1	12315.0	NM_145746	252868.0	Mm.76826	NM_145746	ENSMUSG00000032921	Odf4	Oppo1	outer dense fiber of sperm tails 4	protein-coding	1.23088199498894	1.37369239483055	1.93423325814539	0.916886050339643	1.49386284349544	1.81489036067747	0.934020257994297	1.79087687225067	0.434292688830551	0.731993621767894	0.998431161219273
Merged-chr14-110929430-2	chr14	110929330	110929530	+	627.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR26|LTR|ERVK	-174281.0	NM_175499	239250.0	Mm.49728	NM_175499	ENSMUSG00000045871	Slitrk6	4832410J21Rik|Sltk6	SLIT and NTRK-like family, member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119545501-2	chr11	119545401	119545601	+	633.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_008730, intron 2 of 4)	intron (NM_008730, intron 2 of 4)	2319.0	NM_008730	18164.0	Mm.5142	NM_008730	ENSMUSG00000025582	Nptx1	D11Bwg1004e|Np1	neuronal pentraxin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100124410-2	chr7	100124310	100124510	+	798.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-2910.0	NM_133692	67967.0	Mm.37562	NM_133692	ENSMUSG00000030726	Pold3	2410142G14Rik|C85233|P66|P68	polymerase (DNA-directed), delta 3, accessory subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25219203-4	chr7	25219114	25219314	+	952.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207677, intron 1 of 4)	CpG	645.0	NM_207677	67379.0	Mm.280594	NM_026117	ENSMUSG00000054499	Dedd2	2410050E11Rik|FLAME-3	death effector domain-containing DNA binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-109003370-3	chr9	109003291	109003491	+	880.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153430, intron 3 of 13)	B3|SINE|B2	11489.0	NR_153430	270198.0	Mm.132391	NM_173019	ENSMUSG00000025648	Pfkfb4	C230090D14	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-73003990-2	chr8	73003890	73004090	+	776.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001317391, intron 7 of 15)	MTE2a|LTR|ERVL-MaLR	-12522.0	NR_039551	100628574.0		NR_039551	ENSMUSG00000093140	Mir28b	mmu-mir-28b	microRNA 28b	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30364669-2	chr2	30364569	30364769	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175392, intron 1 of 15)	intron (NM_175392, intron 1 of 15)	334.0	NM_175392	108958.0	Mm.254974	NM_175392	ENSMUSG00000026858	Miga2	5730472N09Rik|AA408683|AI790341|C9orf54|Fam73b|R74766	mitoguardin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-147060173-3	chr5	147060060	147060260	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080795, intron 1 of 9)	intron (NM_080795, intron 1 of 9)	16412.0	NM_080795	140887.0	Mm.272203	NM_080795	ENSMUSG00000016520	Lnx2	9630046H24|AW209022	ligand of numb-protein X 2	protein-coding	2.31253145009854	3.63198567301802	3.48824161410717	2.99741045366541	6.4543543982019	6.02106113874628	5.70643965763047	6.13596015086868	3.61457814549928	8.62321139274724e-20	9.12893737854542e-17
Merged-chr16-87671586-2	chr16	87671486	87671686	+	954.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27368.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-60988715-2	chr14	60988615	60988815	+	736.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013869, intron 5 of 9)	intron (NM_013869, intron 5 of 9)	49272.0	NM_001164155	29820.0	Mm.281356	NM_013869	ENSMUSG00000060548	Tnfrsf19	AL023044|AW123854|TAJ|TAJ-ALPHA|TRADE|Troy	tumor necrosis factor receptor superfamily, member 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-85052069-2	chr2	85051969	85052169	+	617.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081260, exon 3 of 12)	exon (NM_001081260, exon 3 of 12)	1609.0	NM_001081260	228140.0	Mm.23606	NM_001081260	ENSMUSG00000033955	Tnks1bp1	Tab182|mKIAA1741	tankyrase 1 binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-96319073-2	chr11	96318973	96319173	+	779.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_010459, exon 1 of 2)	exon (NM_010459, exon 1 of 2)	806.0	NM_010459	15412.0	Mm.3546	NM_010459	ENSMUSG00000038692	Hoxb4	Hox-2.6	homeobox B4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-87426887-4	chr11	87426799	87426999	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199293)	promoter-TSS (NM_001199293)	-692.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3594105-1	chr19	3594005	3594205	+	583.0	f1_c57bl6.idr	intron (NM_008513, intron 18 of 22)	intron (NM_008513, intron 18 of 22)	-18356.0	NM_028999	52036.0	Mm.284686	NM_028999	ENSMUSG00000024908	Ppp6r3	4930528G08Rik|9130026N02Rik|D19Bwg1430e|D19Ertd703e|Pp6r3|Ppcs3|Pptcs3|Sapl|Saps3|mKIAA1558	protein phosphatase 6, regulatory subunit 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-79290006-1	chr14	79289906	79290106	+	600.0	f1_c57bl6.idr	intron (NM_025427, intron 4 of 4)	intron (NM_025427, intron 4 of 4)	11629.0	NM_025427	66214.0	Mm.29811	NM_025427	ENSMUSG00000022018	Rgcc	1190002H23Rik|Rgc-32|Rgc32	regulator of cell cycle	protein-coding	-0.708067439731862	-1.04776773859242	-0.891691772734346	-1.06381774556393	-1.06637580156124	-1.0454043736417	-0.887571956433178	-1.06350050560954	-1.50183254253061	0.617552213998559	1
Merged-chr16-58624234-2	chr16	58624134	58624334	+	874.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7256.0	NM_001033404	328695.0	Mm.293308	NM_001033404	ENSMUSG00000075002	Gm813	Gm1781	predicted gene 813	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-57644562-2	chr15	57644462	57644662	+	619.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50105.0	NM_199449	387609.0	Mm.36557	NM_199449	ENSMUSG00000071757	Zhx2	Afr-1|Afr1|Raf|mKIAA0854	zinc fingers and homeoboxes 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-30922599-3	chr12	30922500	30922700	+	923.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289480, intron 2 of 8)	intron (NM_001289480, intron 2 of 8)	10931.0	NM_013709	24057.0	Mm.218624	NM_013709	ENSMUSG00000020669	Sh3yl1	AI314953|Ray|YSC84	Sh3 domain YSC-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-40266970-2	chr1	40266870	40267070	+	567.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001123382, intron 1 of 10)	intron (NM_001123382, intron 1 of 10)	384.0	NM_001123382	16177.0	Mm.896	NM_008362	ENSMUSG00000026072	Il1r1	CD121a|CD121b|IL-1R1|IL-iR|Il1r-1	interleukin 1 receptor, type I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-5094658-2	chr11	5094558	5094758	+	659.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007968, intron 1 of 16)	B2_Mm2|SINE|B2	4430.0	NM_001283062	14030.0	Mm.142822	NM_007968	ENSMUSG00000009079	Ewsr1	Ews|Ewsh	Ewing sarcoma breakpoint region 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-89773986-4	chr16	89773888	89774088	+	845.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44364.0	NM_001145887	21844.0	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-101948638-1	chr3	101948538	101948738	+	565.0	f1_c57bl6.idr	Intergenic	L1MEg|LINE|L1	-24185.0	NM_001039371	242126.0	Mm.90204	NM_001039371	ENSMUSG00000033147	Slc22a15	2610034P21Rik|4930477M19|A530052I06Rik|BB219042	solute carrier family 22 (organic anion/cation transporter), member 15	protein-coding	1.2516681896878	1.86773206215136	2.12849202222912	1.97166618290857	1.55707274875273	1.1323125958807	1.93928828704846	1.76206999488343	-0.642536449183863	0.558984579697456	0.960321604678676
Merged-chr9-36916583-3	chr9	36916480	36916680	+	817.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029838, intron 7 of 12)	intron (NM_001029838, intron 7 of 12)	83006.0	NM_001357611	235180.0	Mm.5264	NM_183171	ENSMUSG00000032118	Fez1	UNC-76|UNC76	fasciculation and elongation protein zeta 1 (zygin I)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-128979535-2	chr4	128979435	128979635	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-13689.0	NM_016895	11637.0	Mm.29460	NM_016895	ENSMUSG00000028792	Ak2	Ak-2|D4Ertd220e	adenylate kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-43798635-2	chr7	43798535	43798735	+	586.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008940, exon 2 of 5)	exon (NM_008940, exon 2 of 5)	1058.0	NM_008940	259277.0	Mm.458023	NM_008940	ENSMUSG00000064023	Klk8	BSP1|NP|Nrpn|Prss19	kallikrein related-peptidase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-123113064-6	chr9	123112958	123113158	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081188)	promoter-TSS (NM_001081188)	147.0	NM_026917	69035.0	Mm.28300	NM_026917	ENSMUSG00000025786	Zdhhc3	1110020O22Rik|1810006O10Rik|2210017C02Rik|DHHC-3|GODZ|Gramp1|Zfp373	zinc finger, DHHC domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46504332-4	chr19	46504238	46504438	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053100, intron 1 of 5)	intron (NM_053100, intron 1 of 5)	2690.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-109124435-1	chr9	109124335	109124535	+	638.0	f0_balb.idr	Intergenic	Intergenic	28999.0	NM_172775	235611.0	Mm.53862	NM_172775	ENSMUSG00000053646	Plxnb1	2900002G15Rik|AU042020|mKIAA0407	plexin B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-7068823-2	chr10	7068723	7068923	+	773.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-45638.0	NM_001033391	320495.0	Mm.331674	NM_001033391	ENSMUSG00000064065	Ipcef1	A130090K04Rik	interaction protein for cytohesin exchange factors 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-35093784-1	chr2	35093684	35093884	+	642.0	f0_balb.idr	intron (NM_178885, intron 3 of 9)	intron (NM_178885, intron 3 of 9)	6901.0	NM_001243102	98870.0	Mm.415380	NM_178885	ENSMUSG00000035875	AI182371	AI046667	expressed sequence AI182371	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-111094587-4	chr8	111094491	111094691	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198308)	promoter-TSS (NM_198308)	-154.0	NM_198308	319518.0	Mm.28350	NM_198308	ENSMUSG00000033624	Pdpr	4930402E16Rik|AU018056|mKIAA1990	pyruvate dehydrogenase phosphatase regulatory subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-122087291-3	chr7	122087195	122087395	+	981.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028177, exon 5 of 5)	3' UTR (NM_028177, exon 5 of 5)	14553.0	NR_153798	70316.0	Mm.3014	NM_028177	ENSMUSG00000030869	Ndufab1	2210401F17Rik|2310039H15Rik|2610003B19Rik|8kDa|9130423F15Rik|ACP|CI-SDAP|SDAP	NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-71007058-4	chr12	71006942	71007142	+	899.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045055, intron 3 of 3)	Lx8|LINE|L1	8781.0	NR_045056	73204.0	Mm.363770	NR_045055	ENSMUSG00000085622	3110056K07Rik	4921536K06Rik	RIKEN cDNA 3110056K07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-110385476-4	chr5	110385377	110385577	+	982.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142642, intron 5 of 18)	intron (NM_001142642, intron 5 of 18)	1650.0	NM_028596	381668.0	Mm.348782	NM_028596	ENSMUSG00000043323	Fbrsl1	2410025L10Rik|AI467568|Gm1049|Gm29766|mKIAA1545	fibrosin-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141722200-4	chr4	141722096	141722296	+	984.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001017966, intron 1 of 9)	intron (NM_001017966, intron 1 of 9)	1223.0	NM_001017966	68817.0	Mm.393721	NM_001017966	ENSMUSG00000078515	Ddi2	1110056G13Rik|1700027M01Rik|9130022E05Rik|AI604911|AU040698	DNA-damage inducible protein 2	protein-coding	2.3905689464686	2.68851984282396	1.53399918350752	2.43570821488132	2.14128221381049	1.32306197037104	1.7501221955435	2.44851147281883	-0.805768609934559	0.407547987209078	0.891845785649541
Merged-chr15-102355548-2	chr15	102355448	102355648	+	943.25	f1_balb.idr|f1_c57bl6.idr	TTS (NR_155425)	TTS (NR_155425)	4721.0	NR_155425	102640093.0	Mm.385825	NR_155425	ENSMUSG00000116402	Gm36246	-	predicted gene, 36246	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-148453011-4	chr5	148452921	148453121	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53117.0	NM_007513	11987.0	Mm.275489	NM_007513	ENSMUSG00000041313	Slc7a1	4831426K01Rik|AI447493|Atrc-1|Atrc1|Cat1|Rec-1|Rev-1|mCAT-1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-80428578-4	chr11	80428482	80428682	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178616)	promoter-TSS (NM_178616)	-33.0	NM_178616	69077.0	Mm.260539	NM_178616	ENSMUSG00000017428	Psmd11	1700089D09Rik|1810019E17Rik|2610024G20Rik|2810055C24Rik|C78232|P44.5|S9	proteasome (prosome, macropain) 26S subunit, non-ATPase, 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-98821558-2	chr15	98821458	98821658	+	835.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016781, intron 2 of 11)	B3|SINE|B2	9950.0	NM_016781	19082.0	Mm.6670	NM_016781	ENSMUSG00000067713	Prkag1	AA571379|BB036179|Prkaac	protein kinase, AMP-activated, gamma 1 non-catalytic subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-48116458-2	chr4	48116358	48116558	+	988.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-8461.0	NM_026343	67727.0	Mm.171334	NM_026343	ENSMUSG00000061455	Stx17	4833418L03Rik|6330411F21Rik|9030425C21Rik|AW048351	syntaxin 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-82822042-4	chr18	82821948	82822148	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33849.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-55563920-4	chr15	55563824	55564024	+	885.091675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168250, intron 4 of 16)	intron (NM_001168250, intron 4 of 16)	6516.0	NM_001168250	105837.0	Mm.390829	NM_134092	ENSMUSG00000022369	Mtbp	AI429604|MDM2BP	Mdm2, transformed 3T3 cell double minute p53 binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-107803972-4	chr4	107803898	107804098	+	905.341675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080926, intron 2 of 18)	intron (NM_001080926, intron 2 of 18)	1739.0	NM_001080926	16975.0	Mm.442134	NM_053073	ENSMUSG00000028613	Lrp8	4932703M08Rik|AA921429|AI848122|ApoER2|Lr8b	low density lipoprotein receptor-related protein 8, apolipoprotein e receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-75679456-4	chr15	75679337	75679537	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355589)	promoter-TSS (NM_001355589)	-637.0	NM_028404	72960.0	Mm.182401	NM_028404	ENSMUSG00000000934	Top1mt	2900052H09Rik	DNA topoisomerase 1, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-17879664-4	chr14	17879585	17879785	+	959.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113417, intron 2 of 9)	intron (NM_001113417, intron 2 of 9)	-101959.0	NM_009380	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84799321-4	chr8	84799230	84799430	+	976.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081982, intron 1 of 9)	CpG	1008.0	NM_010906	18032.0	Mm.9394	NM_010906	ENSMUSG00000001911	Nfix	CTF|NF-I/X|NF1-X|NFI-X	nuclear factor I/X	protein-coding	-0.0506246483341526	-0.0245585595455413	0.964679345311191	-0.0395213070164522	-0.0489569279621976	-0.022685524653721	0.980896293220884	-0.0383672236603453	0.0411024359562296	0.985638187048853	1
Merged-chr13-101741278-2	chr13	101741178	101741378	+	577.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077495, intron 2 of 15)	intron (NM_001077495, intron 2 of 15)	26939.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-73686966-4	chr12	73686865	73687065	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008856, intron 2 of 13)	intron (NM_008856, intron 2 of 13)	102169.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-95046113-3	chr4	95046024	95046224	+	927.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6098.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56812227-4	chr17	56812139	56812339	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009056, intron 1 of 16)	RMER5|LTR|ERV1	18769.0	NM_009056	19725.0	Mm.102	NM_009056	ENSMUSG00000024206	Rfx2	5430432H19Rik	regulatory factor X, 2 (influences HLA class II expression)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-14164130-3	chr16	14164036	14164236	+	787.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114085, intron 1 of 8)	intron (NM_001114085, intron 1 of 8)	861.0	NM_001114085	67203.0	Mm.24105	NM_023317	ENSMUSG00000022678	Nde1	2810027M15Rik|AU042936|AW822251|Nude|mNudE	nudE neurodevelopment protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120581641-4	chr11	120581543	120581743	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133796)	promoter-TSS (NM_133796)	-23.0	NM_133796	192662.0	Mm.30016	NM_133796	ENSMUSG00000025132	Arhgdia	5330430M07Rik|Gdi-1|Rho-GDI|RhoDGI|RhoGDI-1	Rho GDP dissociation inhibitor (GDI) alpha	protein-coding	0.154915362521859	0.181752074112082	1.03863275906337	0.521161490978511	0.156624136358784	0.183691137070809	1.14668035307414	0.167500802068523	-0.120855221760669	0.952853456901525	1
Merged-chr1-152601570-1	chr1	152601470	152601670	+	619.0	f0_balb.idr	intron (NM_001346119, intron 2 of 17)	intron (NM_001346119, intron 2 of 17)	23647.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-65693754-4	chr18	65693657	65693857	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4511.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-36181741-2	chr3	36181641	36181841	+	592.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198192, intron 4 of 5)	intron (NM_198192, intron 4 of 5)	30661.0	NM_001101478	241944.0	Mm.260056	NM_001101478	ENSMUSG00000033883	D3Ertd254e	-	DNA segment, Chr 3, ERATO Doi 254, expressed	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47526440-2	chr17	47526340	47526540	+	582.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081635, intron 1 of 6)	B1_Mus2|SINE|Alu	21389.0	NM_001081635	12445.0	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-26941094-2	chr2	26940994	26941194	+	795.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_198628, exon 5 of 19)	exon (NM_198628, exon 5 of 19)	7025.0	NM_198628	279029.0	Mm.330079	NM_198628	ENSMUSG00000049897	Stkld1	Gm711|Sgk071	serine/threonine kinase-like domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-83309653-2	chr4	83309553	83309753	+	642.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027238, intron 1 of 19)	intron (NM_027238, intron 1 of 19)	14536.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126590236-4	chr8	126590125	126590325	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001164598, exon 2 of 2)	3' UTR (NM_001164598, exon 2 of 2)	3211.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	1.31076435544333	1.94958075457588	0.881745078159896	1.62289674014424	1.32192937254336	1.13597016400546	1.79652387861712	0.871602186863657	-0.597011013035058	0.647637644005375	0.984971605872381
Merged-chr10-122682320-3	chr10	122682214	122682414	+	902.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110218, intron 1 of 9)	intron (NM_001110218, intron 1 of 9)	2999.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	3.41136717612854	2.64663407513155	2.70151851004691	2.97134975668963	3.49520486997558	3.69627465407085	2.7231589627788	3.33423032338757	0.638315934970192	0.307002614162417	0.807530845817162
Merged-chr1-152805054-4	chr1	152804949	152805149	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010877, intron 1 of 15)	intron (NM_010877, intron 1 of 15)	4896.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-121685979-3	chr11	121685877	121686077	+	824.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12826.0	NM_178664	210004.0	Mm.386847	NM_178664	ENSMUSG00000046605	B3gntl1	6030413G23Rik	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-85124820-4	chr16	85124716	85124916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198825, intron 1 of 15)	intron (NM_001198825, intron 1 of 15)	48891.0	NM_001198825	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	4.57014190132575	4.58260373191889	4.43977861760658	4.32279919357816	3.58952677481386	5.01240337362304	4.57093179385287	3.61189444552111	-0.202353782723435	0.650004617561395	0.985422869512088
Merged-chr11-86257093-2	chr11	86256993	86257193	+	777.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027421, intron 1 of 24)	intron (NM_027421, intron 1 of 24)	475.0	NM_027421	70422.0	Mm.171304	NM_027421	ENSMUSG00000018068	Ints2	2810417D08Rik|AA408260|AI987735|mKIAA1287	integrator complex subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-140764299-2	chr6	140764199	140764399	+	580.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	137414.0	NM_001309436	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-61174872-1	chr18	61174772	61174972	+	907.0	f1_c57bl6.idr	intron (NM_134134, intron 1 of 20)	intron (NM_134134, intron 1 of 20)	2177.0	NM_178277	106894.0	Mm.22574	NM_134134	ENSMUSG00000024622	Hmgxb3	2510002C16Rik|A630042L21Rik|AI413166|mKIAA0194	HMG box domain containing 3	protein-coding	0.813940528375889	0.901109888868539	2.50864533651137	2.35597856000253	1.56296140868078	0.907050727924887	2.29217812900228	0.856053761122707	-0.827713016308603	0.727596059774597	0.998431161219273
Merged-chr3-142768893-1	chr3	142768793	142768993	+	848.0	f1_balb.idr	intron (NM_145546, intron 1 of 6)	intron (NM_145546, intron 1 of 6)	3646.0	NM_145546	229906.0	Mm.271756	NM_145546	ENSMUSG00000028271	Gtf2b	-	general transcription factor IIB	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34021864-2	chr17	34021764	34021964	+	852.1666869999999	f1_balb.idr|f1_c57bl6.idr	exon (NM_009066, exon 6 of 7)	exon (NM_009066, exon 6 of 7)	2816.0	NM_009066	19763.0	Mm.20343	NM_009066	ENSMUSG00000024325	Ring1	Ring1A	ring finger protein 1	protein-coding	0.889534745338767	0.275860342449209	0.269474890700661	0.564572716856804	0.821642359101035	0.277299383668031	0.270883491142648	0.690432381660569	0.0658723515076065	0.972818824008493	1
Merged-chr11-115184694-2	chr11	115184594	115184794	+	691.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025400, intron 3 of 6)	intron (NM_025400, intron 3 of 6)	2622.0	NM_025400	66176.0	Mm.86823	NM_025400	ENSMUSG00000015542	Nat9	1110028N05Rik	N-acetyltransferase 9 (GCN5-related, putative)	protein-coding	0.513958334173172	1.05641541855613	1.01030804914688	1.18672474504081	0.515694298168994	0.921019679151345	1.02056365297862	0.526795243655339	-1.04365238745725	0.525814149188681	1
Merged-chr7-38028897-4	chr7	38028860	38029060	+	780.758301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9408.0	NM_011274	19777.0	Mm.387220	NM_011274	ENSMUSG00000030421	Uri1	C80913|NNX3|Rmp	URI1, prefoldin-like chaperone	protein-coding	1.16357833323749	1.55932832289445	0.752883104239798	0.543397317486967	0.968044497052089	0.564800315765406	1.07329214452145	0.544859991270594	-1.19988186163408	0.4528948918284	0.918756234638126
Merged-chr10-83168618-6	chr10	83168492	83168692	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021439, intron 2 of 2)	intron (NM_021439, intron 2 of 2)	169225.0	NM_177388	338365.0	Mm.67073	NM_177388	ENSMUSG00000034591	Slc41a2	A230035L05Rik|SLC41A1-L1	solute carrier family 41, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-60744692-4	chr9	60744582	60744782	+	853.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31561.0	NM_026235	67557.0	Mm.44546	NM_026235	ENSMUSG00000034839	Larp6	5430431G03Rik|AI552438|Achn	La ribonucleoprotein domain family, member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-54402323-4	chr12	54402204	54402404	+	987.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10986.0	NR_033689	665239.0	Mm.26856	NR_033689		Gm7550	EG665239|Gm666	predicted gene 7550	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27697309-3	chr2	27697209	27697409	+	929.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011305, intron 1 of 9)	intron (NM_011305, intron 1 of 9)	-11983.0	NM_001290481	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-76056439-4	chr13	76056324	76056524	+	999.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175495, exon 1 of 1)	exon (NM_175495, exon 1 of 1)	572.0	NM_175495	238725.0	Mm.167172	NM_175495	ENSMUSG00000045509	Gpr150	C030001A19Rik|PGR11	G protein-coupled receptor 150	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44988801-2	chr7	44988702	44988902	+	723.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_045266, intron 1 of 1)	B1_Mus1|SINE|Alu	1902.0	NR_045266	100502630.0	Mm.490013	NR_045266	ENSMUSG00000087138	Gm15545	-	predicted gene 15545	ncRNA	-1.8429182434137	-1.8129848525291	-1.82203695700074	-1.54461076807193	-1.84081697472045	-1.81102322372834	-1.81998775896484	-1.82814164409203	-1.43114970378833	0.684630132144154	1
Merged-chr11-106503509-2	chr11	106503409	106503609	+	737.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_198292, exon 12 of 12)	3' UTR (NM_198292, exon 12 of 12)	2518.0	NR_030703	100216537.0		NR_030703	ENSMUSG00000065126	Snord104	-	small nucleolar RNA, C/D box 104	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-86920527-1	chr8	86920427	86920627	+	662.5	f0_balb.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-35269.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-86976732-4	chr3	86976620	86976820	+	845.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9866.0	NM_001289449	12480.0	Mm.389465	NM_007640	ENSMUSG00000041750	Cd1d2	CD1.2|Cd1b|Ly-38	CD1d2 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-25324172-3	chr10	25324090	25324290	+	812.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-25027.0	NM_018747	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	1.06188144787289	1.23876257385021	0.546690262419284	1.13828632205187	1.48916150578433	0.559741328112947	0.549054641675735	0.539824742406716	-0.628568642150964	0.71135109000665	0.998431161219273
Merged-chr5-143048392-4	chr5	143048287	143048487	+	979.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359851, intron 12 of 15)	intron (NM_001359851, intron 12 of 15)	64633.0	NM_207110	108086.0	Mm.381440	NM_080561	ENSMUSG00000045078	Rnf216	2810055G22Rik|AI647468|AU019462|C86502|F830018F18Rik|TRIAD3|UIP83|Ubce7ip1	ring finger protein 216	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-123651858-2	chr7	123651758	123651958	+	759.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11B|LTR|ERVK	-151232.0	NM_001081329	210162.0	Mm.135397	NM_175435	ENSMUSG00000030757	Zkscan2	9430065N20Rik|AW493225|Zfp694	zinc finger with KRAB and SCAN domains 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91601962-4	chr16	91601852	91602052	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4272.0	NM_030018	77975.0	Mm.290341	NM_030018	ENSMUSG00000022964	Tmem50b	AU015466|AU019872|B230114J08Rik	transmembrane protein 50B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-62482681-1	chr10	62482581	62482781	+	542.0	f1_c57bl6.idr	intron (NM_001358543, intron 1 of 7)	B1F|SINE|Alu	3917.0	NM_001113355	30930.0	Mm.260703	NM_133672	ENSMUSG00000020078	Vps26a	AA407240|HB58|Vps26	VPS26 retromer complex component A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-70942802-4	chr9	70942692	70942892	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001324472, intron 1 of 9)	intron (NM_001324472, intron 1 of 9)	-7984.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-53332849-2	chr19	53332749	53332949	+	923.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001008543, intron 2 of 5)	ORR1D1|LTR|ERVL-MaLR	2441.0	NM_001008543	17859.0	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-78115514-4	chr11	78115424	78115624	+	994.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145430, intron 1 of 2)	intron (NM_145430, intron 1 of 2)	20851.0	NM_145430	216971.0	Mm.119387	NM_145430	ENSMUSG00000037750	Fam222b	9630020I17Rik	family with sequence similarity 222, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120131324-4	chr8	120131226	120131426	+	881.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172286, intron 1 of 12)	intron (NM_172286, intron 1 of 12)	-13603.0	NM_001163760	234797.0	Mm.101958	NM_172286	ENSMUSG00000031824	6430548M08Rik	AW049007|Kiaa0513|mKIAA0513	RIKEN cDNA 6430548M08 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127252592-4	chr7	127252484	127252684	+	914.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360916, intron 2 of 2)	B2_Mm2|SINE|B2	7483.0	NM_001360916	244216.0	Mm.41038	NM_177362	ENSMUSG00000054716	Zfp771	G630024C07Rik|Znf771	zinc finger protein 771	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-29269983-2	chr6	29269883	29270083	+	987.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2505.0	NM_001190461	69573.0	Mm.45161	NM_023516	ENSMUSG00000043421	Hilpda	2310016C08Rik|AW049004|Hig2	hypoxia inducible lipid droplet associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-13198828-2	chr16	13198728	13198928	+	681.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57653.0	NM_001122667	239719.0	Mm.270643	NM_153588	ENSMUSG00000009569	Mkl2	Gt4-1|MRTF-B|Mrtfb|mKIAA1243	MKL/myocardin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46499967-4	chr19	46499875	46500075	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1673.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-77510315-2	chr11	77510215	77510415	+	701.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001024920, intron 3 of 6)	intron (NM_001024920, intron 3 of 6)	2958.0	NM_001024920	216964.0	Mm.341211	NM_001024920	ENSMUSG00000044328	Trp53i13	2410019G02Rik|Tp53i13	transformation related protein 53 inducible protein 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-42943186-2	chr9	42943086	42943286	+	901.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_175481, intron 1 of 20)	intron (NM_175481, intron 1 of 20)	1185.0	NM_175481	110637.0	Mm.370291	NM_175481	ENSMUSG00000032017	Grik4	6330551K01Rik|GluK4|GluRgamma1|KA-1|KA1	glutamate receptor, ionotropic, kainate 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-95662065-2	chr9	95661965	95662165	+	642.325012	f1_balb.idr|f1_c57bl6.idr	intron (NM_029620, intron 2 of 8)	intron (NM_029620, intron 2 of 8)	24437.0	NM_029620	76477.0	Mm.46016	NM_029620	ENSMUSG00000015354	Pcolce2	2400001O18Rik|Pcpe2	procollagen C-endopeptidase enhancer 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-109230988-4	chr2	109230877	109231077	+	971.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029790, intron 2 of 5)	intron (NM_029790, intron 2 of 5)	47313.0	NM_029790	76894.0	Mm.330451	NM_029790	ENSMUSG00000057234	Mettl15	0610027B03Rik|AI303697|AW049952|Mett5d1	methyltransferase like 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-16015868-4	chr19	16015791	16015991	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30816.0	NR_045355	100502653.0	Mm.149980	NR_045355	ENSMUSG00000097557	C130060C02Rik	-	RIKEN cDNA C130060C02 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132530360-2	chr4	132530260	132530460	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_007512)	TTS (NM_007512)	5054.0	NM_007512	11983.0	Mm.2171	NM_007512	ENSMUSG00000054428	Atpif1	Atpi|IF(1)|If1	ATPase inhibitory factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-67040615-2	chr15	67040515	67040715	+	608.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70974.0	NM_008681	17988.0	Mm.30837	NM_008681	ENSMUSG00000005125	Ndrg1	CAP43|CMT4D|DRG1|HMSNL|NMSL|Ndr1|Ndrl|PROXY1|RTP|TDD5	N-myc downstream regulated gene 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-45484083-2	chr17	45483983	45484183	+	574.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9145.0	NM_001357831	71020.0	Mm.44257	NM_027649	ENSMUSG00000023935	Spats1	1700011H05Rik|4933400B06Rik|Ddip|Srsp1	spermatogenesis associated, serine-rich 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-4605294-2	chr2	4605194	4605394	+	758.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177844, intron 10 of 11)	intron (NM_001177844, intron 10 of 11)	45540.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116020726-4	chr11	116020677	116020877	+	977.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	3727.0	NM_008211	15081.0	Mm.18516	NM_008211	ENSMUSG00000016559	H3f3b	9430068D06Rik|H3.3B	H3 histone, family 3B	protein-coding	1.75160613461976	1.5458414426013	1.20091695958888	1.32632690082526	1.76588685386516	1.55684622636143	1.20710025272631	1.33190321595439	0.0388885327760997	0.97314532422526	0.998431161219273
Merged-chr4-102569223-3	chr4	102569127	102569327	+	742.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177980)	promoter-TSS (NM_001177980)	-833.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-25356020-2	chr15	25355920	25356120	+	865.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57744.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132600707-4	chr4	132600604	132600804	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36637.0	NM_001081211	19204.0	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84706915-4	chr8	84706834	84707034	+	969.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001081981, exon 11 of 11)	3' UTR (NM_001081981, exon 11 of 11)	5477.0	NM_008535	17095.0	Mm.4925	NM_008535	ENSMUSG00000034041	Lyl1	Lyl-1|bHLHa18	lymphoblastomic leukemia 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167387932-2	chr2	167387832	167388032	+	805.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33778.0	NM_148929	77031.0	Mm.278924	NM_148929	ENSMUSG00000039463	Slc9a8	1200006P13Rik|6430709P13Rik|AI182282|NHE-8|NHE8	solute carrier family 9 (sodium/hydrogen exchanger), member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-96107808-1	chr13	96107708	96107908	+	549.0	f0_c57.idr	intron (NM_029210, intron 1 of 12)	intron (NM_029210, intron 1 of 12)	24769.0	NM_029210	75209.0	Mm.40436	NM_029210	ENSMUSG00000051111	Sv2c	4930527L09Rik|AI841971	synaptic vesicle glycoprotein 2c	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-44404411-1	chr13	44404311	44404511	+	642.0	f0_c57.idr	Intergenic	Intergenic	-35316.0	NR_045489	69491.0	Mm.392410	NR_045489	ENSMUSG00000098144	1700029N11Rik	-	RIKEN cDNA 1700029N11 gene	ncRNA	1.13230391472424	2.47142617906666	2.00486556432356	0.948536877694085	1.32464710511863	2.31435137140783	0.974213190836251	1.70927517608655	-0.310571881802588	0.80014075906819	0.998431161219273
Merged-chr11-34053647-4	chr11	34053550	34053750	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010696, intron 2 of 20)	LTR103b_Mam|LTR|ERV1?	6722.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-66814606-4	chr10	66814499	66814699	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	105785.0	NR_138560	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-4122729-4	chr11	4122647	4122847	+	933.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4018.0	NM_144520	67815.0	Mm.253922	NM_144520	ENSMUSG00000003585	Sec14l2	1300013M05Rik|Spf|TAP	SEC14-like lipid binding 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-138939882-4	chr1	138939764	138939964	+	980.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-23845.0	NM_001166501	329260.0	Mm.337604	NM_181347	ENSMUSG00000056268	Dennd1b	4632404N19Rik|4930467M19Rik|6820401H01Rik|F730008N07Rik	DENN/MADD domain containing 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-12413183-3	chr13	12413068	12413268	+	793.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144835, intron 17 of 44)	intron (NM_144835, intron 17 of 44)	17793.0	NM_144835	217995.0	Mm.171186	NM_144835	ENSMUSG00000050244	Heatr1	AA517551|B130016L12Rik|BC019693	HEAT repeat containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36723884-2	chr18	36723784	36723984	+	853.125	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR12B|LTR|ERVK	2931.0	NM_009841	12475.0	Mm.3460	NM_009841	ENSMUSG00000051439	Cd14	-	CD14 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-27399632-4	chr16	27399525	27399725	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025615, intron 1 of 9)	intron (NM_001025615, intron 1 of 9)	10669.0	NM_001289436	67501.0	Mm.258985	NM_026202	ENSMUSG00000038127	Ccdc50	C3orf6	coiled-coil domain containing 50	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-33505004-2	chr1	33504904	33505104	+	641.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008922, intron 10 of 13)	intron (NM_008922, intron 10 of 13)	164790.0	NM_008922	19076.0	Mm.27705	NM_008922	ENSMUSG00000026134	Prim2	AI323589	DNA primase, p58 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-89403808-4	chr7	89403701	89403901	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008055)	promoter-TSS (NM_008055)	421.0	NM_001360746	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	3.71198010561098	2.00609370972499	3.17516993333173	2.61524435383438	3.74114822707599	2.48113477626981	4.17510728337127	3.43752660850545	0.866676435686396	0.20793197571635	0.69660308394772
Merged-chr8-56551538-4	chr8	56551445	56551645	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001009951)	promoter-TSS (NM_001009951)	411.0	NM_015791	50753.0	Mm.251174	NM_015791	ENSMUSG00000038206	Fbxo8	Fbx8	F-box protein 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-25302831-3	chr15	25302724	25302924	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	110940.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-94935335-4	chr8	94935238	94935438	+	979.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033468, intron 6 of 11)	MLT1K|LTR|ERVL-MaLR	11644.0	NM_001145972	382045.0	Mm.334726	NM_001033468	ENSMUSG00000061577	Adgrg5	Gm1109|Gpr114|PGR27	adhesion G protein-coupled receptor G5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-37043952-4	chr11	37043863	37044063	+	946.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-99722.0	NM_011856	23964.0	Mm.439889	NM_011856	ENSMUSG00000049336	Tenm2	Odz2|Odz3|Ten-2|Ten-m2	teneurin transmembrane protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-10356184-4	chr17	10356059	10356259	+	779.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31557.0	NR_045461	76634.0	Mm.491052	NR_045461	ENSMUSG00000099384	1700110C19Rik	-	RIKEN cDNA 1700110C19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-146749957-2	chr6	146749857	146750057	+	771.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346666, intron 1 of 11)	intron (NM_001346666, intron 1 of 11)	25027.0	NM_172734	232533.0	Mm.322121	NM_172734	ENSMUSG00000001630	Stk38l	4930473A22Rik|Ndr2|Ndr54	serine/threonine kinase 38 like	protein-coding	-0.700064241511417	-0.186671140929496	-0.692852367725508	-0.695563882069579	-0.699394869705802	-0.177296101845517	-0.692077155152847	-0.695090216270211	0.0394491945098347	0.989215944639676	1
Merged-chr5-99229048-2	chr5	99228948	99229148	+	923.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_181318, intron 9 of 13)	intron (NM_181318, intron 9 of 13)	23879.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-49982415-4	chr16	49982292	49982492	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045001, intron 1 of 3)	intron (NR_045001, intron 1 of 3)	1932.0	NR_045001	628951.0	Mm.428032	NR_045001		Gm6936	-	predicted gene 6936	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117431424-2	chr8	117431324	117431524	+	818.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028941, intron 9 of 20)	intron (NM_028941, intron 9 of 20)	-21599.0	NR_106045	102466801.0		NR_106045	ENSMUSG00000099062	Mir7077	Gm27774|mmu-mir-7077	microRNA 7077	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-4480359-2	chr2	4480259	4480459	+	636.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 3 of 23)	RMER1B|Other|Other	79383.0	NM_001177843	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-34087311-2	chr4	34087211	34087411	+	726.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVB4_1C-LTR_Mm|LTR|ERVK	-37244.0	NM_026293	67652.0	Mm.55848	NM_026293	ENSMUSG00000028264	Spaca1	1700124L11Rik|4930540L03Rik	sperm acrosome associated 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-112721723-3	chr6	112721636	112721836	+	632.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_080448, exon 22 of 22)	3' UTR (NM_080448, exon 22 of 22)	-25066.0	NM_001167730	58186.0	Mm.103812	NM_021385	ENSMUSG00000030254	Rad18	2810024C04Rik|Rad18sc	RAD18 E3 ubiquitin protein ligase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-38146444-2	chr3	38146344	38146544	+	630.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61675.0	NR_040541	71342.0	Mm.410782	NR_040541	ENSMUSG00000106002	5430434I15Rik	-	RIKEN cDNA 5430434I15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-101812116-3	chr13	101812007	101812207	+	839.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43890.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-13697676-2	chr8	13697576	13697776	+	694.875	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8213.0	NM_001101519	403185.0	Mm.252143	NM_001101519	ENSMUSG00000090336	4932443I19Rik	A230061C02Rik|Gm1106	RIKEN cDNA 4932443I19 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-109473830-4	chr11	109473748	109473948	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134038)	promoter-TSS (NM_134038)	-252.0	NM_001029842	104681.0	Mm.265874	NM_134038	ENSMUSG00000041920	Slc16a6	AW743111|ESTM12|MCT 6|MCT 7|MCT6	solute carrier family 16 (monocarboxylic acid transporters), member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67291279-4	chr10	67291157	67291357	+	910.5166630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5976.0	NM_001036293	641340.0	Mm.136223	NM_001036293	ENSMUSG00000075000	Nrbf2	NRBF-2	nuclear receptor binding factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-25077955-3	chr8	25077834	25078034	+	828.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031257, intron 2 of 11)	intron (NM_031257, intron 2 of 11)	23877.0	NM_031257	83436.0	Mm.261122	NM_031257	ENSMUSG00000031557	Plekha2	6430512N22Rik|AI851530|AU041791|TAPP2|W91773	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126684175-4	chr8	126684073	126684273	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-90737.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-90056674-3	chr9	90056601	90056801	+	833.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001312649, intron 1 of 10)	intron (NM_001312649, intron 1 of 10)	2434.0	NM_001312649	13036.0	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135494449-4	chr5	135494363	135494563	+	893.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146001, intron 1 of 30)	intron (NM_146001, intron 1 of 30)	50659.0	NM_146001	215114.0	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-75575504-4	chr7	75575397	75575597	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 3 of 36)	intron (NM_029332, intron 3 of 36)	119963.0	NM_029332	75547.0	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-6453284-2	chr2	6453184	6453384	+	581.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	100548.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-41571234-4	chr10	41571141	41571341	+	986.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358562, intron 36 of 47)	intron (NM_001358562, intron 36 of 47)	3225.0	NR_045341	70538.0	Mm.399807	NR_045341	ENSMUSG00000091370	5730435O14Rik	-	RIKEN cDNA 5730435O14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-31635438-2	chr12	31635338	31635538	+	941.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164090)	promoter-TSS (NM_001164090)	-780.0	NM_001164090	12033.0	Mm.242379	NM_007530	ENSMUSG00000020650	Bcap29	AW208404|Bap29	B cell receptor associated protein 29	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-130417466-4	chr1	130417351	130417551	+	997.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007827, intron 4 of 9)	intron (NM_007827, intron 4 of 9)	-5373.0	NR_151525	102640368.0		NR_151525	ENSMUSG00000087691	Gm15674	-	predicted gene 15674	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-34380175-1	chr18	34380075	34380275	+	572.0	f0_balb.idr	Intergenic	Intergenic	-6760.0	NM_007874	13476.0	Mm.280075	NM_007874	ENSMUSG00000005873	Reep5	AI324241|AU022809|AW495741|DP1/TB2|Dp1|R74856|TB2/DP1	receptor accessory protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-73067131-4	chr17	73067013	73067213	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40872.0	NM_001177968	225010.0	Mm.329194	NM_001081071	ENSMUSG00000054469	Lclat1	AI181996|Agpat8|Alcat1|Gm91|Lycat	lysocardiolipin acyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-40512672-3	chr8	40512591	40512791	+	997.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011135)	promoter-TSS (NM_011135)	908.0	NM_033560	52348.0	Mm.489696	NM_033560	ENSMUSG00000031600	Vps37a	2210018P21Rik|4930592A21Rik|AW261445|D8Ertd531e	vacuolar protein sorting 37A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-55947966-2	chr17	55947866	55948066	+	769.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310337, intron 1 of 3)	intron (NM_001310337, intron 1 of 3)	1534.0	NM_001310337	240120.0	Mm.441018	NM_146249	ENSMUSG00000062101	Zfp119b	-	zinc finger protein 119b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-36662886-4	chr16	36662787	36662987	+	995.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019388, intron 1 of 7)	intron (NM_019388, intron 1 of 7)	3190.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-55354917-4	chr3	55354778	55354978	+	814.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357475, intron 3 of 16)	intron (NM_001357475, intron 3 of 16)	-106850.0	NM_001195539	13175.0	Mm.393242	NM_019978	ENSMUSG00000027797	Dclk1	1700113D08Rik|2810480F11Rik|AI836758|Click-I|Cpg16|Dcamkl1|Dcl|Dclk|mKIAA0369	doublecortin-like kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-61677815-2	chr14	61677715	61677915	+	747.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_028264, intron 1 of 6)	MT2B1|LTR|ERVL	4558.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-142457504-2	chr5	142457404	142457604	+	665.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_199068, exon 9 of 9)	3' UTR (NM_199068, exon 9 of 9)	-6427.0	NM_172725	231855.0	Mm.78250	NM_172725	ENSMUSG00000039623	Ap5z1	C330006K01Rik	adaptor-related protein complex 5, zeta 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-97522827-2	chr13	97522727	97522927	+	647.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER97b|DNA|hAT-Tip100	-37173.0	NR_046157	328314.0	Mm.138047	NR_046157	ENSMUSG00000110235	Gm5086	B230311A21|EG328314	predicted gene 5086	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-94868798-4	chr13	94868706	94868906	+	995.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-6821.0	NM_011021	18420.0	Mm.42051	NM_011021	ENSMUSG00000021685	Otp	-	orthopedia homeobox	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-35280323-2	chr3	35280223	35280423	+	891.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-357672.0	NR_105799	102466155.0		NR_105799	ENSMUSG00000098862	Mir6378	Gm27706|mmu-mir-6378	microRNA 6378	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91001298-4	chr16	91001183	91001383	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045515, intron 2 of 32)	intron (NM_001045515, intron 2 of 32)	9812.0	NM_001045515	104015.0	Mm.187079	NM_001045515	ENSMUSG00000022973	Synj1	A930006D20Rik|AA675315|mKIAA0910	synaptojanin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55315928-4	chr19	55315832	55316032	+	958.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001293685)	promoter-TSS (NM_001293685)	104.0	NM_001360595	66980.0	Mm.386789	NM_025883	ENSMUSG00000024982	Zdhhc6	2400007G07Rik|5930409M18Rik|AI462345|C77369|DHHC-6	zinc finger, DHHC domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4293725-2	chr19	4293625	4293825	+	655.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290818, intron 2 of 20)	B1_Mus1|SINE|Alu	-10588.0	NM_026720	68423.0	Mm.23642	NM_026720	ENSMUSG00000005986	Ankrd13d	0710001P18Rik|AI430801	ankyrin repeat domain 13 family, member D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-11156349-4	chr4	11156255	11156455	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021897)	promoter-TSS (NM_021897)	-86.0	NM_001199105	60599.0	Mm.393018	NM_021897	ENSMUSG00000028211	Trp53inp1	2700057G22Rik|SIP|SIP18|SIP27|Stinp|Teap|p53DINP1	transformation related protein 53 inducible nuclear protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-152339463-2	chr3	152339416	152339616	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162375, intron 1 of 13)	intron (NM_001162375, intron 1 of 13)	891.0	NM_174868	215708.0	Mm.135018	NM_174868	ENSMUSG00000054942	Miga1	A930038D06|AI852168|C030011O14Rik|Fam73a|Mita1	mitoguardin 1	protein-coding	1.58828427920396	2.48929043099478	2.04290225855847	2.51424646881164	1.19242564485785	2.78921981112218	1.90636401430328	1.99447588460873	-0.252075539111574	0.800161412551647	0.998431161219273
Merged-chr9-87023159-1	chr9	87023059	87023259	+	1000.0	f1_c57bl6.idr	intron (NM_001359962, intron 1 of 14)	intron (NM_001359962, intron 1 of 14)	1130.0	NM_001359962	266690.0	Mm.30166	NM_024195	ENSMUSG00000032872	Cyb5r4	2810034J18Rik|B5+B5R|C79736|Cb5cb5r|Ncb5or|b5/b5r|b5b5r	cytochrome b5 reductase 4	protein-coding	1.62666493783064	2.45929273152005	1.3882725599761	1.86109666696827	1.48437529652835	2.80926943995248	1.39809749001115	1.8712232851852	0.338752569313247	0.743377252425496	0.998431161219273
Merged-chr4-83265783-2	chr4	83265687	83265887	+	772.5	f0_balb.idr|f1_balb.idr	intron (NM_027238, intron 3 of 19)	intron (NM_027238, intron 3 of 19)	58402.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	1.96618621468018	2.38818269677272	2.69218641664565	1.41311203754882	2.59530511226253	3.34822916630079	3.23889303235693	2.82540755522992	1.66322813577391	0.0372681993039162	0.274658387744709
Merged-chr15-6578147-4	chr15	6578024	6578224	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1723.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-109607828-4	chr8	109607727	109607927	+	907.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020046, intron 1 of 8)	B3A|SINE|B2	846.0	NM_020046	56749.0	Mm.23894	NM_020046	ENSMUSG00000031730	Dhodh	2810417D19Rik|AI834883	dihydroorotate dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-62843483-4	chr5	62843390	62843590	+	972.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170705, intron 6 of 8)	Tigger5b|DNA|TcMar-Tigger	29667.0	NM_001170705	100322896.0	Mm.479821	NM_001170705	ENSMUSG00000090326	Dthd1	Gm17384	death domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-80497363-4	chr17	80497274	80497474	+	930.658325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16921.0	NM_009231	20662.0	Mm.60975	NM_009231	ENSMUSG00000024241	Sos1	4430401P03Rik|9630010N06|AI449023	SOS Ras/Rac guanine nucleotide exchange factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-6006324-4	chr17	6006231	6006431	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357667, intron 6 of 24)	intron (NM_001357667, intron 6 of 24)	-1249.0	NM_001290698	20975.0	Mm.236068	NM_011523	ENSMUSG00000023805	Synj2	AI481647|SJ2|mKIAA0348	synaptojanin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-34499305-2	chr12	34499205	34499405	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271386, intron 4 of 27)	intron (NM_001271386, intron 4 of 27)	29584.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-56700321-2	chr18	56700221	56700421	+	627.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-7492.0	NM_010721	16906.0	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139369068-2	chr5	139368968	139369168	+	786.833374	f1_balb.idr|f1_c57bl6.idr	TTS (NR_029768)	TTS (NR_029768)	677.0	NR_029768	723898.0		NR_029768	ENSMUSG00000065593	Mir339	Mirn339|mir-339|mmu-mir-339	microRNA 339	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16312440-4	chr7	16312325	16312525	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133234, intron 2 of 3)	CpG-12701	2842.0	NM_133234	170770.0	Mm.7660	NM_133234	ENSMUSG00000002083	Bbc3	PUMA|PUMA/JFY1	BCL2 binding component 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-31130080-4	chr9	31129996	31130196	+	905.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011176, intron 1 of 18)	intron (NM_011176, intron 1 of 18)	1703.0	NM_011176	19143.0	Mm.243926	NM_011176	ENSMUSG00000031995	St14	Epithin|MT-SP1|Prss14|Tmprss14|mCAP3|matriptase	suppression of tumorigenicity 14 (colon carcinoma)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-23453718-3	chr5	23453612	23453812	+	821.022217	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026984, intron 2 of 25)	B2_Mm2|SINE|B2	19283.0	NM_026984	69188.0	Mm.205190	NM_026984	ENSMUSG00000029004	Kmt2e	1810033J14Rik|9530077A04Rik|D230038D11Rik|Mll5|NKp44L	lysine (K)-specific methyltransferase 2E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-96034342-2	chr11	96034234	96034434	+	666.833313	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033568)	promoter-TSS (NM_033568)	-551.0	NM_033568	27681.0	Mm.372235	NM_033568	ENSMUSG00000006058	Snf8	D11Moh34	SNF8, ESCRT-II complex subunit, homolog (S. cerevisiae)	protein-coding	0.491666126844682	-0.0269775356128729	1.07264232871344	-0.039868646010666	-0.0479309827361269	-0.0253548465906129	0.175633141447555	-0.0388789416623685	-3.36523364296227	0.120750656979454	1
Merged-chr2-18064577-4	chr2	18064485	18064685	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045539)	promoter-TSS (NR_045539)	0.0	NM_001252560	17354.0	Mm.209175	NM_010804	ENSMUSG00000026743	Mllt10	Af10|B130021D15Rik|D630001B22Rik|mKIAA4140	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64886315-4	chr5	64886209	64886409	+	870.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46390.0	NM_030682	21897.0	Mm.273024	NM_030682	ENSMUSG00000044827	Tlr1	-	toll-like receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-144002839-4	chr1	144002740	144002940	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009061, exon 3 of 5)	exon (NM_009061, exon 3 of 5)	1309.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-54192177-1	chr12	54192077	54192277	+	625.0	f0_balb.idr	intron (NM_028133, intron 1 of 4)	intron (NM_028133, intron 1 of 4)	11697.0	NM_028133	112407.0	Mm.133037	NM_028133	ENSMUSG00000035105	Egln3	2610021G09Rik|AI505553|AI648162|Hif-p4h-3|Phd3|SM-20	egl-9 family hypoxia-inducible factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3683507-2	chr19	3683406	3683606	+	642.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008513, intron 1 of 22)	intron (NM_008513, intron 1 of 22)	3058.0	NM_008513	16973.0	Mm.274581	NM_008513	ENSMUSG00000024913	Lrp5	BMND1|HBM|LR3|LRP7|OPPG|mKIAA4142	low density lipoprotein receptor-related protein 5	protein-coding	0.020235405711367	-0.221283074072927	0.0869150398713995	-0.228736413335498	-0.0938560499024867	0.378976335962875	-0.224567894367412	-0.228170896860206	0.590300537922743	0.794778784450721	1
Merged-chr13-56712378-3	chr13	56712284	56712484	+	935.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164042, intron 1 of 6)	intron (NM_001164042, intron 1 of 6)	8716.0	NM_001164042	17129.0	Mm.272920	NM_008541	ENSMUSG00000021540	Smad5	1110051M15Rik|AI451355|Dwf-C|Madh5|MusMLP	SMAD family member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80137745-2	chr10	80137645	80137845	+	658.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001195268)	promoter-TSS (NM_001195268)	-358.0	NM_001195268	100503659.0	Mm.485395	NM_015761	ENSMUSG00000035640	Cbarp	9630008F14|Dos|R29144/1	calcium channel, voltage-dependent, beta subunit associated regulatory protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-78908073-3	chr8	78907969	78908169	+	940.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	-86917.0	NM_030145	78651.0	Mm.28694	NM_030145	ENSMUSG00000031683	Lsm6	1500031N17Rik|2410088K19Rik|AI747288	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3912458-2	chr12	3912358	3912558	+	892.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001271753, exon 23 of 23)	3' UTR (NM_001271753, exon 23 of 23)	20714.0	NM_153743	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-103169111-4	chr15	103169003	103169203	+	891.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-5819.0	NM_027885	71726.0	Mm.254820	NM_027885	ENSMUSG00000036061	Smug1	1200013B09Rik|A930006H09Rik|C85220	single-strand selective monofunctional uracil DNA glycosylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-100415595-2	chr6	100415495	100415695	+	821.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-111805.0	NR_040525	73395.0	Mm.69413	NR_040525	ENSMUSG00000101553	1700049E22Rik	-	RIKEN cDNA 1700049E22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-29849762-2	chr6	29849662	29849862	+	610.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001171000, intron 1 of 16)	ORR1F|LTR|ERVL-MaLR	-3979.0	NM_001347084	74340.0	Mm.210899	NM_021414	ENSMUSG00000029772	Ahcyl2	4631427C17Rik|AI227036|Adohcyase3|mKIAA0828	S-adenosylhomocysteine hydrolase-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-62858161-4	chr16	62858071	62858271	+	760.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011173, intron 1 of 14)	MTE-int|LTR|ERVL-MaLR	3864.0	NM_011173	19128.0	Mm.127156	NM_011173	ENSMUSG00000022912	Pros1	AW214361	protein S (alpha)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-39275264-4	chr6	39275155	39275355	+	915.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68482.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-105372981-2	chr7	105372881	105373081	+	617.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001242363, exon 13 of 13)	3' UTR (NM_001242363, exon 13 of 13)	-2057.0	NM_001195727	100503879.0	Mm.380109	NM_001195727	ENSMUSG00000078611	Gm5901	EG545989	predicted gene 5901	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-122993693-2	chr14	122993593	122993793	+	772.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	-10410.0	NR_153663	70551.0	Mm.271988	NM_028651	ENSMUSG00000041594	Tmtc4	4930403J22Rik|5730419O14Rik	transmembrane and tetratricopeptide repeat containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95951233-4	chr3	95951139	95951339	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	21982.0	NM_023210	66471.0	Mm.218657	NM_023210	ENSMUSG00000015749	Anp32e	2810018A15Rik|AI047746|AI326868|CPD1|LANP-L|LANPL|mLANP-L	acidic (leucine-rich) nuclear phosphoprotein 32 family, member E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-91153739-4	chr6	91153627	91153827	+	894.770874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3088.0	NM_144919	232232.0	Mm.206218	NM_144919	ENSMUSG00000034245	Hdac11	-	histone deacetylase 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153632371-2	chr2	153632264	153632464	+	871.0	f0_balb.idr|f1_balb.idr	intron (NM_001195390, intron 1 of 9)	intron (NM_001195390, intron 1 of 9)	417.0	NM_001195390	99311.0	Mm.294478	NM_133850	ENSMUSG00000056941	Commd7	2310010I22Rik|AW060956|mU3	COMM domain containing 7	protein-coding	2.05036819323166	2.6182813338663	1.05391270925295	1.02983238303694	2.16273616906606	1.60734792535723	1.06063325718498	2.73757094827829	0.392424330244402	0.747312237631229	0.998431161219273
Merged-chr8-114971556-2	chr8	114971445	114971645	+	632.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_019573, intron 8 of 8)	intron (NM_019573, intron 8 of 8)	531893.0	NM_019573	80707.0	Mm.440420	NM_019573	ENSMUSG00000004637	Wwox	5330426P09Rik|9030416C10Rik|WOX1	WW domain-containing oxidoreductase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-24967173-4	chr19	24967061	24967261	+	976.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5545.0	NM_146097	226043.0	Mm.272127	NM_146097	ENSMUSG00000024878	Cbwd1	AV349248|BC018472	COBW domain containing 1	protein-coding	-0.52003675224187	-0.509123495943192	-0.512709957775302	-0.355323037773783	-0.377185588252184	0.102264030747481	-0.335565102161185	-0.514988023300909	2.48900305294912	0.30782426113298	1
Merged-chr11-87428675-2	chr11	87428575	87428775	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199293, intron 1 of 30)	intron (NM_001199293, intron 1 of 30)	1084.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-80075118-1	chr2	80075018	80075218	+	632.0	f1_balb.idr	intron (NM_001355141, intron 2 of 15)	intron (NM_001355141, intron 2 of 15)	-36216.0	NM_001355142	18573.0	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding	0.636298427011532	0.396439944151671	0.389678107962009	0.800237350081605	1.0153043105312	0.397964662871345	0.843556503928805	0.685955781205351	1.16292038661288	0.50332819356975	1
Merged-chr1-125470087-2	chr1	125469987	125470187	+	850.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-34360.0	NM_001205385	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-100835061-4	chr13	100834962	100835162	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(GAA)n|Simple_repeat|Simple_repeat	-1635.0	NM_022885	69048.0	Mm.402215	NM_022885	ENSMUSG00000021629	Slc30a5	1810010K08Rik|AF233321|ZNT5|ZTL1|ZnT-5|Zntl1	solute carrier family 30 (zinc transporter), member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-62838653-4	chr9	62838536	62838736	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033175)	promoter-TSS (NM_001033175)	-151.0	NM_001033175	76524.0	Mm.283636	NM_001033175	ENSMUSG00000032245	Cln6	1810065L06Rik|AW743417|D9Bwg1455e|nclf	ceroid-lipofuscinosis, neuronal 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-137690913-3	chr6	137690801	137691001	+	855.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR40c|LTR|ERVL	-41616.0	NM_007945	13860.0	Mm.235346	NM_007945	ENSMUSG00000015766	Eps8	AW261790	epidermal growth factor receptor pathway substrate 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-184732225-4	chr1	184732136	184732336	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_008250, exon 1 of 4)	5' UTR (NM_008250, exon 1 of 4)	257.0	NM_008250	15284.0	Mm.1347	NM_008250	ENSMUSG00000039377	Hlx	Hlx1	H2.0-like homeobox	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-58075539-2	chr14	58075439	58075639	+	762.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013518, intron 1 of 2)	CpG	2853.0	NM_013518	14180.0	Mm.8846	NM_013518	ENSMUSG00000021974	Fgf9	Eks	fibroblast growth factor 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-99427292-4	chr10	99427178	99427378	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	164047.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-148886055-4	chr5	148885950	148886150	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153572, intron 9 of 10)	intron (NM_153572, intron 9 of 10)	42597.0	NM_153572	231912.0	Mm.397405	NM_153572	ENSMUSG00000041298	Katnal1	-	katanin p60 subunit A-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-33600338-8	chr8	33600269	33600469	+	915.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017374, intron 1 of 6)	intron (NM_017374, intron 1 of 6)	748.0	NM_017374	19053.0	Mm.29301	NM_017374	ENSMUSG00000009630	Ppp2cb	AI115466|D8Ertd766e|PP2Ac	protein phosphatase 2 (formerly 2A), catalytic subunit, beta isoform	protein-coding	3.77170160650732	3.07708962305231	1.56791788078159	3.67805474601013	2.84880579040292	3.29939962364707	2.30326910770421	2.79138387289378	-0.698188674122661	0.359569129549506	0.856306289008338
Merged-chr16-23557891-4	chr16	23557792	23557992	+	949.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19A|LTR|ERVK	-37077.0	NM_001359083	17174.0	Mm.1213	NM_008555	ENSMUSG00000022887	Masp1	AW048060|CCPII|Crarf|Masp1/3	mannan-binding lectin serine peptidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-164838447-2	chr2	164838347	164838547	+	994.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038492, intron 12 of 14)	intron (NM_001038492, intron 12 of 14)	4674.0	NM_008906	19025.0	Mm.359633	NM_008906	ENSMUSG00000017760	Ctsa	AU019505|PPCA|Ppgb	cathepsin A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-34967394-2	chr6	34967294	34967494	+	643.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025573, intron 2 of 7)	intron (NM_001025573, intron 2 of 7)	10605.0	NM_001025573	243753.0	Mm.440221	NM_001025573	ENSMUSG00000029847	Slc23a4	2010107G12Rik|Gm468	solute carrier family 23 member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120573365-2	chr8	120573265	120573465	+	704.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145896, intron 11 of 15)	intron (NM_001145896, intron 11 of 15)	15710.0	NM_178856	272551.0	Mm.275910	NM_178856	ENSMUSG00000031821	Gins2	2210013I18Rik|4833427B12Rik|AI323585|Pfs2	GINS complex subunit 2 (Psf2 homolog)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129388020-1	chr2	129387920	129388120	+	1000.0	f0_balb.idr	Intergenic	Intergenic	-16881.0	NM_008361	16176.0	Mm.222830	NM_008361	ENSMUSG00000027398	Il1b	IL-1beta|Il-1b	interleukin 1 beta	protein-coding	5.14437777484336	4.71472179146734	4.70948452061938	5.18828568543789	5.10458151030723	4.89123151336519	4.32086020928697	3.57785549097675	-0.447472001755127	0.262349392306119	0.763704924152041
Merged-chr7-29232518-4	chr7	29232356	29232556	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033525)	promoter-TSS (NM_001033525)	66.0	NM_001033525	52150.0	Mm.24877	NM_001033525	ENSMUSG00000046410	Kcnk6	D7Ertd764e|Toss|Twik2	potassium inwardly-rectifying channel, subfamily K, member 6	protein-coding	2.51970975774127	1.13025070355825	2.7546569303423	2.30163816824128	1.48576986864585	1.13859206914169	3.29007385074877	1.06629348380122	-0.280968216852071	0.882718561258716	0.998431161219273
Merged-chr14-47165306-1	chr14	47165206	47165406	+	625.0	f0_balb.idr	intron (NM_008102, intron 3 of 5)	intron (NM_008102, intron 3 of 5)	24107.0	NM_008102	14528.0	Mm.10651	NM_008102	ENSMUSG00000037580	Gch1	GTP-CH|GTP-CH-I|GTPCH|Gch	GTP cyclohydrolase 1	protein-coding	0.762625187507805	0.708334102758177	0.4927178811058	0.663127428228864	1.4556953050939	0.887371627406423	0.494719238312237	0.947879975855088	1.85532635019714	0.242199696954849	1
Merged-chr17-78882062-2	chr17	78881961	78882161	+	788.0	f0_balb.idr|f0_c57.idr	intron (NM_011163, intron 1 of 15)	intron (NM_011163, intron 1 of 15)	511.0	NM_011163	19106.0	Mm.378990	NM_011163	ENSMUSG00000024079	Eif2ak2	2310047A08Rik|4732414G15Rik|AI467567|AI747578|Pkr|Prkr|Tik	eukaryotic translation initiation factor 2-alpha kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-121073195-6	chr7	121073095	121073295	+	929.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030691, intron 1 of 5)	B4|SINE|B4	1335.0	NM_030691	80719.0	Mm.160384	NM_030691	ENSMUSG00000035004	Igsf6	-	immunoglobulin superfamily, member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-13012239-2	chr17	13012139	13012339	+	548.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013671, intron 3 of 4)	ID2|SINE|ID	4400.0	NM_013671	20656.0	Mm.290876	NM_013671	ENSMUSG00000006818	Sod2	MnSOD|Sod-2	superoxide dismutase 2, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-22974406-2	chr11	22974306	22974506	+	696.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_011663, exon 1 of 1)	exon (NM_011663, exon 1 of 1)	-1540.0	NM_001361661	17846.0	Mm.259903	NM_144514	ENSMUSG00000051355	Commd1	AI256843|Murr1|U2/Mu	COMM domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80261744-4	chr10	80261590	80261790	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347119)	promoter-TSS (NM_001347119)	-678.0	NM_010255	14431.0	Mm.7329	NM_010255	ENSMUSG00000020150	Gamt	AA571402|Spintz1	guanidinoacetate methyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-75181741-4	chr14	75181638	75181838	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008879, intron 2 of 16)	intron (NM_008879, intron 2 of 16)	45313.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-88341797-4	chr17	88341702	88341902	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-98902.0	NM_001355743	14236.0	Mm.112824	NM_180974	ENSMUSG00000034998	Foxn2	3230402J05Rik|6030465J18Rik|Fkh19|Foxn1|HTLF	forkhead box N2	protein-coding	7.07013018085751	6.8414378438424	6.99382867202046	6.72810761667253	6.99137380769002	6.70552495612491	6.8977271679745	7.08590717652528	0.0150431239505445	0.931938408785708	0.998431161219273
Merged-chr6-72548283-2	chr6	72548183	72548383	+	917.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001042534)	promoter-TSS (NM_001042534)	-990.0	NM_001042534	12332.0	Mm.18626	NM_007599	ENSMUSG00000056737	Capg	gCap39|mbh1	capping protein (actin filament), gelsolin-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-87313523-4	chr17	87313399	87313599	+	995.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028639, intron 5 of 19)	intron (NM_028639, intron 5 of 19)	30613.0	NM_028639	225049.0	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-34192645-4	chr19	34192552	34192752	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360717)	promoter-TSS (NM_001360717)	-282.0	NM_001360717	76630.0	Mm.130952	NM_029682	ENSMUSG00000024776	Stambpl1	1700095N21Rik|8230401J17Rik|ALMalpha|AMSH-FP	STAM binding protein like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-47251311-4	chr4	47251148	47251348	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009928, intron 5 of 39)	intron (NM_009928, intron 5 of 39)	43236.0	NM_009928	12819.0	Mm.233547	NM_009928	ENSMUSG00000028339	Col15a1	-	collagen, type XV, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4_GL456216_random-17295-1	chr4_GL456216_random	17195	17395	+	1000.0	f0_c57.idr	intron (NM_001033326, intron 1 of 6)	intron (NM_001033326, intron 1 of 6)	1414.0	NM_001033326	236082.0	Mm.305345	NM_001033326	ENSMUSG00000063897	Dhrsx	C80877|D4Ertd296e|Dhrsxy|Pscad	dehydrogenase/reductase (SDR family) X chromosome	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-125053175-7	chr5	125053377	125053577	+	888.9761960000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011424, intron 18 of 46)	intron (NM_011424, intron 18 of 46)	50002.0	NM_028443	73121.0	Mm.296138	NM_028443	ENSMUSG00000037962	Rflna	3110032G18Rik|Fam101a|cfm|cfm2	refilin A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-45583839-4	chr14	45583730	45583930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER34A|LTR|ERV1	40120.0	NR_045809	67651.0	Mm.55930	NR_045809	ENSMUSG00000115324	4930527F14Rik	-	RIKEN cDNA 4930527F14 gene	ncRNA	3.41832192986227	2.54972083359354	4.01501163794892	1.48717963251053	2.76085676517048	3.96781758600025	3.01033854386335	2.39027485916264	-0.0218768780454115	0.978212949559641	0.998431161219273
Merged-chr15-58978783-3	chr15	58978712	58978912	+	937.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144800, intron 3 of 14)	intron (NM_144800, intron 3 of 14)	45002.0	NM_023172	66218.0	Mm.322294	NM_023172	ENSMUSG00000022354	Ndufb9	1190008J14Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-35758493-3	chr5	35758385	35758585	+	792.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177678, intron 1 of 19)	CpG	605.0	NM_001177698	231148.0	Mm.254446	NM_177678	ENSMUSG00000029095	Ablim2	AI606905|C230091L11	actin-binding LIM protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-64753574-4	chr14	64753481	64753681	+	976.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081177, intron 21 of 39)	intron (NM_001081177, intron 21 of 39)	101050.0	NM_001081177	16554.0	Mm.23611	NM_001081177	ENSMUSG00000060012	Kif13b	5330429L19Rik|6030414C01|AI429803|C130021D12Rik|GAKIN	kinesin family member 13B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-33073571-2	chr13	33073471	33073671	+	639.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10532.0	NM_173052	282663.0	Mm.314490	NM_173052	ENSMUSG00000051029	Serpinb1b	6330533H24Rik|EIB|Serpin1b1|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 1b	protein-coding	-0.750357122809614	-0.123942761369175	-0.565069293919668	-0.580544367769721	-0.749735065008341	-0.739632114013936	-0.742925203239297	-0.745731221835862	-3.17050264286339	0.239064183402441	1
Merged-chr6-29280493-2	chr6	29280393	29280593	+	582.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001101486)	promoter-TSS (NM_001101486)	-648.0	NM_001101486	245884.0	Mm.33683	NM_001101486	ENSMUSG00000079652	Fam71f2	AI507611|GARI	family with sequence similarity 71, member F2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-45049896-4	chr9	45049801	45050001	+	960.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357727, intron 5 of 5)	intron (NM_001357727, intron 5 of 5)	-5280.0	NM_001093749	319742.0	Mm.49611	NM_176993	ENSMUSG00000070305	Mpzl3	5430427F17Rik|A530065I17Rik|rc|ruf	myelin protein zero-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-90877066-4	chr5	90876986	90877186	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Arthur1B|DNA|hAT-Tip100	-14159.0	NM_008176	14825.0	Mm.21013	NM_008176	ENSMUSG00000029380	Cxcl1	Fsp|Gro1|KC|Mgsa|N51|Scyb1|gro	chemokine (C-X-C motif) ligand 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-119112742-4	chr2	119112638	119112838	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011234)	promoter-TSS (NM_011234)	-79.0	NM_011234	19361.0	Mm.330492	NM_011234	ENSMUSG00000027323	Rad51	AV304093|Rad51a|Reca	RAD51 recombinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-148615607-1	chr6	148615507	148615707	+	614.5	f0_balb.idr	Intergenic	Intergenic	-1298.0	NR_045867	622319.0	Mm.491049	NM_001037912	ENSMUSG00000070995	Gm6313	EG622319	predicted gene 6313	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-72793654-2	chr15	72793554	72793754	+	573.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029640, intron 16 of 21)	intron (NM_029640, intron 16 of 21)	16670.0	NR_002864	353342.0	Mm.440245	NR_002864	ENSMUSG00000106847	Peg13	-	paternally expressed 13	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-178350531-2	chr1	178350431	178350631	+	646.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-12716.0	NR_149827	51810.0	Mm.86589	NM_016805	ENSMUSG00000039630	Hnrnpu	AA408410|AI256620|AL024194|AL024437|AW557595|C86794|Hnrpu|SAFA|Sp120|hnRNP U	heterogeneous nuclear ribonucleoprotein U	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-109431007-3	chr2	109430897	109431097	+	638.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	150259.0	NM_139303	228421.0	Mm.274086	NM_139303	ENSMUSG00000027115	Kif18a	AU024633|B130001M12Rik|gcd2	kinesin family member 18A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-73767349-4	chr13	73767251	73767451	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360694, intron 1 of 24)	intron (NM_001360694, intron 1 of 24)	3654.0	NM_011390	20499.0	Mm.275800	NM_011390	ENSMUSG00000017756	Slc12a7	AA408796|D13Ertd261e|Kcc4	solute carrier family 12, member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166727375-2	chr2	166727275	166727475	+	766.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-13543.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69663403-4	chr11	69663299	69663499	+	988.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001301710)	promoter-TSS (NM_001301710)	356.0	NR_035455	100316840.0		NR_035455	ENSMUSG00000088752	Mir1934	mir-1934|mmu-mir-1934	microRNA 1934	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-52184279-2	chr15	52184179	52184379	+	661.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-111274.0	NM_172816	239436.0	Mm.208831	NM_172816	ENSMUSG00000022315	Slc30a8	C820002P14Rik|ZnT-8|ZnT8	solute carrier family 30 (zinc transporter), member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118684110-2	chr9	118683956	118684156	+	813.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 13 of 27)	intron (NM_133721, intron 13 of 27)	-27636.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	1.66621999109701	0.997966350308193	0.977996203224158	1.76419416893945	1.7812215130325	2.02201129755948	0.982451179703698	2.1474917961614	1.2258140046519	0.336278780799675	0.836606195473009
Merged-chr1-43502017-7	chr1	43501923	43502123	+	992.9285890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010879, intron 1 of 4)	intron (NM_010879, intron 1 of 4)	56272.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150620743-2	chr4	150620643	150620843	+	614.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001085492, exon 23 of 23)	3' UTR (NM_001085492, exon 23 of 23)	31431.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-56922111-2	chr6	56922011	56922211	+	723.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360963, intron 1 of 9)	intron (NM_001360963, intron 1 of 9)	1821.0	NM_026004	107569.0	Mm.158936	NM_026004	ENSMUSG00000029780	Nt5c3	1600024P05Rik|2610206B05Rik|3110004A18Rik|AI842776|Nt5c3a|Nt5y|P5'N-1|P5N-1|PN-1|PN-I|PSN1|UMPH|Umph-1|Umph1|cN-III|lupin|p36	5'-nucleotidase, cytosolic III	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-97633072-4	chr1	97632973	97633173	+	936.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	28603.0	NM_001355074	52392.0	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-30944300-7	chr14	30944207	30944407	+	987.642883	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1018.0	NM_001306078	16424.0	Mm.3227	NM_008406	ENSMUSG00000006529	Itih1	ITI-HC1|Intin1|Itih-1	inter-alpha trypsin inhibitor, heavy chain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191198120-4	chr1	191198015	191198215	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14782.0	NM_007498	11910.0	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-76962053-4	chr10	76961972	76962172	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021568)	promoter-TSS (NM_021568)	-125.0	NM_021568	59093.0	Mm.272803	NM_021568	ENSMUSG00000001120	Pcbp3	AlphaCP-3	poly(rC) binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91561764-4	chr16	91561673	91561873	+	992.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008338, exon 6 of 7)	exon (NM_008338, exon 6 of 7)	14679.0	NM_008338	15980.0	Mm.249364	NM_008338	ENSMUSG00000022965	Ifngr2	Ifgr2|Ifgt	interferon gamma receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-81059043-4	chr1	81058940	81059140	+	979.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17910.0	NM_001356399	241134.0	Mm.313904	NM_172849	ENSMUSG00000054976	Nyap2	9430031J16Rik|Jr6|Kiaa1486	neuronal tyrosine-phophorylated phosphoinositide 3-kinase adaptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-66079915-4	chr5	66079805	66080005	+	891.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139065, intron 2 of 6)	intron (NM_139065, intron 2 of 6)	18274.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124550999-2	chr5	124550899	124551099	+	940.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_019770)	TTS (NM_019770)	-1865.0	NM_001190795	67848.0	Mm.281601	NM_026409	ENSMUSG00000029389	Ddx55	2810021H22Rik|mKIAA1595	DEAD (Asp-Glu-Ala-Asp) box polypeptide 55	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-192088129-4	chr1	192087979	192088179	+	825.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011633, intron 1 of 9)	intron (NM_011633, intron 1 of 9)	4520.0	NM_011633	22033.0	Mm.380491	NM_011633		Traf5	-	TNF receptor-associated factor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19694030-2	chr7	19693930	19694130	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-1371.0	NM_007469	11812.0	Mm.182440	NM_007469	ENSMUSG00000040564	Apoc1	Apo-CIB|ApoC-IB|apo-CI|apoC-I	apolipoprotein C-I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-60978705-4	chr8	60978610	60978810	+	994.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173873, intron 1 of 12)	intron (NM_173873, intron 1 of 12)	4601.0	NM_173873	12725.0	Mm.25263	NM_007711	ENSMUSG00000004319	Clcn3	Clc3	chloride channel, voltage-sensitive 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-135738478-2	chr7	135738375	135738575	+	567.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22096.0	NM_001081117	17345.0	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-132601245-3	chr2	132601109	132601309	+	677.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033469, intron 1 of 3)	intron (NR_033469, intron 1 of 3)	3013.0	NR_033469	767814.0	Mm.371752	NR_033468	ENSMUSG00000074783	AU019990	-	expressed sequence AU019990	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-76392968-5	chr12	76392881	76393081	+	908.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11195.0	NM_001002012	15512.0	Mm.296181	NM_008301	ENSMUSG00000059970	Hspa2	70kDa|HSP70.2|HSP70A2|Hsp70-2	heat shock protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-86300853-1	chr10	86300753	86300953	+	577.0	f1_c57bl6.idr	5' UTR (NM_011595, exon 1 of 5)	5' UTR (NM_011595, exon 1 of 5)	441.0	NM_011595	21859.0	Mm.4871	NM_011595	ENSMUSG00000020044	Timp3	Timp-3	tissue inhibitor of metalloproteinase 3	protein-coding	-0.284076148760544	0.304062111586869	-0.270633116766797	-0.275647588391247	-0.282813885968565	0.777223798688287	-0.269208007955002	-0.274768243718138	1.29049014185893	0.601967528275455	1
Merged-chr2-90650175-4	chr2	90650058	90650258	+	997.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27057.0	NM_021512	59015.0	Mm.24532	NM_021512	ENSMUSG00000051329	Nup160	160kDa|2810011M03Rik|AA414952|AU020188|Gtl-13|Gtl1-13|Gtl13|mKIAA0197	nucleoporin 160	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-77878531-1	chr14	77878431	77878631	+	681.5	f1_c57bl6.idr	Intergenic	Intergenic	-3614.0	NM_025384	66148.0	Mm.248046	NM_025384	ENSMUSG00000022013	Dnajc15	1110003P16Rik|Dnajd1	DnaJ heat shock protein family (Hsp40) member C15	protein-coding	2.71452716076646	2.5832330077047	1.24138121357628	2.3241542816479	1.17854281160443	2.12344925252538	1.89678247909768	2.33666271790377	-0.89193076102824	0.391527780654925	0.880790683555837
Merged-chr2-111522571-2	chr2	111522471	111522671	+	596.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3C|LINE|L1	15716.0	NM_146885	258887.0	Mm.223297	NM_146885	ENSMUSG00000109547	Olfr1294	MOR248-7	olfactory receptor 1294	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-12758949-2	chr17	12758849	12759049	+	741.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_010515, intron 1 of 47)	intron (NM_010515, intron 1 of 47)	10757.0	NM_010515	16004.0	Mm.26553	NM_010515	ENSMUSG00000023830	Igf2r	AI661837|CD222|CI-MPR|M6P/IGF2R|Mpr300	insulin-like growth factor 2 receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80100706-2	chr10	80100606	80100806	+	852.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359637, intron 1 of 3)	intron (NM_001359637, intron 1 of 3)	481.0	NM_001359635	216161.0	Mm.262102	NM_183426	ENSMUSG00000035673	Sbno2	BC019206|F730040C21|Sno|Stno	strawberry notch 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-78037933-4	chr11	78037818	78038018	+	847.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001040403)	promoter-TSS (NM_001040403)	-23.0	NM_001040403	14252.0	Mm.130227	NM_008028	ENSMUSG00000061981	Flot2	AI573412|Esa|reggie-2	flotillin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32260833-4	chr2	32260710	32260910	+	879.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011675)	promoter-TSS (NM_011675)	-705.0	NM_011675	22245.0	Mm.425076	NM_011675	ENSMUSG00000002550	Uck1	URK1|Umpk	uridine-cytidine kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-50134311-4	chr11	50134206	50134406	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029745, intron 1 of 20)	Arthur1|DNA|hAT-Tip100	2946.0	NM_029745	76795.0	Mm.290975	NM_029745	ENSMUSG00000036644	Tbc1d9b	-	TBC1 domain family, member 9B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-128824400-1	chr1	128824300	128824500	+	549.0	f0_balb.idr	Intergenic	Intergenic	-232101.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-20259453-2	chr5	20259353	20259553	+	855.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001170746, intron 6 of 22)	B4|SINE|B4	351935.0	NM_015823	50791.0	Mm.332231	NM_015823	ENSMUSG00000040003	Magi2	AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705	membrane associated guanylate kinase, WW and PDZ domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-68214057-3	chr17	68213923	68214123	+	761.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59774.0	NM_177278	320858.0	Mm.137356	NM_177278	ENSMUSG00000041565	L3mbtl4	A730037L19Rik|D930040M24Rik	L3MBTL4 histone methyl-lysine binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-105609494-1	chr7	105609394	105609594	+	637.0	f1_balb.idr	intron (NM_001285873, intron 11 of 11)	intron (NM_001285873, intron 11 of 11)	-9378.0	NM_017371	15458.0	Mm.3485	NM_017371	ENSMUSG00000030895	Hpx	Hpxn|hx	hemopexin	protein-coding	-1.13129152895393	-0.760314410582534	-1.11939102144509	-1.12796902636669	-1.1307976245896	-0.753160406462703	-1.11683883442949	-1.12699414366937	0.0387695613834025	0.99058038935327	1
Merged-chr1-181212050-4	chr1	181211957	181212157	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145514)	promoter-TSS (NM_145514)	-79.0	NM_145514	226757.0	Mm.289082	NM_145514	ENSMUSG00000038733	Wdr26	1600024A01Rik|AA693241|AI447817|AU044014|C77982|Gid7	WD repeat domain 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16285535-4	chr7	16285395	16285595	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172297)	promoter-TSS (NM_172297)	-836.0	NM_172297	243846.0	Mm.482401	NM_172297	ENSMUSG00000041375	Ccdc9	2600011L02Rik	coiled-coil domain containing 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-102814383-1	chr2	102814283	102814483	+	590.0	f1_c57bl6.idr	intron (NM_001039150, intron 13 of 13)	intron (NM_001039150, intron 13 of 13)	-67623.0	NR_153853	102637542.0	Mm.371582	NR_153852		Gm13872	-	predicted gene 13872	ncRNA	2.08940344539384	0.61509527301962	1.57769089266342	0.811571001689965	1.43044793151383	0.618723268057154	0.602365562991555	0.588013695982174	-1.9590130572798	0.217045899883699	0.707538695710375
Merged-chr19-12502148-4	chr19	12502048	12502248	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172442)	promoter-TSS (NM_172442)	-152.0	NM_172442	207521.0	Mm.247695	NM_172442	ENSMUSG00000039982	Dtx4	AI449438|BC044798|D930042H13|RNF155	deltex 4, E3 ubiquitin ligase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-145243794-2	chr4	145243694	145243894	+	699.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011610, intron 1 of 9)	intron (NM_011610, intron 1 of 9)	3076.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-61370517-4	chr10	61370419	61370619	+	765.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013753, intron 1 of 19)	intron (NM_013753, intron 1 of 19)	13004.0	NM_013753	27355.0	Mm.269699	NM_013753	ENSMUSG00000020092	Pald1	MMPAL|Pald|mKIAA1274	phosphatase domain containing, paladin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91609840-2	chr16	91609740	91609940	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	9159.0	NM_001099738	246738.0	Mm.101927	NM_138664	ENSMUSG00000039763	Dnajc28	BC020175|ORF28	DnaJ heat shock protein family (Hsp40) member C28	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-8135341-1	chr14	8135241	8135441	+	572.0	f0_balb.idr	intron (NM_001360314, intron 4 of 19)	intron (NM_001360314, intron 4 of 19)	37130.0	NM_001360315	218699.0	Mm.29515	NM_145458	ENSMUSG00000033885	Pxk	C230080L11Rik|D14Ertd813e|Monaka|Slob	PX domain containing serine/threonine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-102702074-2	chr3	102701958	102702158	+	685.916626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32712.0	NM_027533	70747.0	Mm.27469	NM_027533	ENSMUSG00000027858	Tspan2	6330415F13Rik|B230119D02Rik|tspan-2	tetraspanin 2	protein-coding	-0.219167622435333	-0.200905234586661	0.623556373849257	-0.211452906971295	-0.218015096292241	-0.199572895519234	0.538722955652117	-0.210645488759364	-0.223709379174966	0.928365796660662	1
Merged-chr14-26579960-3	chr14	26579857	26580057	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145969, intron 1 of 17)	CpG	407.0	NM_145969	211922.0	Mm.260512	NM_145969	ENSMUSG00000040818	Dennd6a	Fam116a	DENN/MADD domain containing 6A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-60178349-4	chr2	60178259	60178459	+	945.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31577.0	NM_020575	57438.0	Mm.260635	NM_020575	ENSMUSG00000026977	March7	Axo|Axot|Gtrgeo17	membrane-associated ring finger (C3HC4) 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101639903-2	chr11	101639803	101640003	+	630.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	11954.0	NM_025654	66599.0	Mm.41449	NM_025654	ENSMUSG00000010362	Rdm1	2410008M22Rik|AW212028|Rad52b	RAD52 motif 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-31759864-4	chr18	31759690	31759890	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001242430)	promoter-TSS (NM_001242430)	-34.0	NM_153515	225339.0	Mm.290804	NM_153515	ENSMUSG00000041915	Ammecr1l	5430429D03Rik|AU022236|AU040755|AW111353|E230022H04Rik	AMME chromosomal region gene 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-3152850-4	chr11	3152753	3152953	+	1000.0	f0_balb.idr|f1_balb.idr	intron (NM_030207, intron 14 of 32)	B3A|SINE|B2	28832.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-4524630-4	chr8	4524508	4524708	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_026058, exon 11 of 11)	3' UTR (NM_026058, exon 11 of 11)	31203.0	NM_026058	67260.0	Mm.35511	NM_026058	ENSMUSG00000008206	Cers4	2900019C14Rik|Lass4|Trh1	ceramide synthase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-29201873-2	chr19	29201773	29201973	+	671.1999509999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49930.0	NM_001048177	16452.0	Mm.275839	NM_008413	ENSMUSG00000024789	Jak2	Fd17	Janus kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3952767-2	chr4	3952667	3952867	+	603.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13343.0	NR_104356	66433.0	Mm.27406	NM_181391	ENSMUSG00000042198	Chchd7	1810049H20Rik	coiled-coil-helix-coiled-coil-helix domain containing 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-136035079-4	chr5	136034966	136035166	+	898.8916630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB7|LINE|L1	-3430.0	NM_175309	100647.0	Mm.3089	NM_175309	ENSMUSG00000042985	Upk3b	AI447729|AI957187|P35|PMS2L14|UpIIIb	uroplakin 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-4947170-2	chr11	4947070	4947270	+	723.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001243043)	promoter-TSS (NM_001243043)	-351.0	NM_001243043	11764.0	Mm.274816	NM_007454	ENSMUSG00000009090	Ap1b1	Adtb1|b2b1660Clo	adaptor protein complex AP-1, beta 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-39782095-4	chr1	39781986	39782186	+	675.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MEc|LINE|L1	23246.0	NM_001177348	100042065.0	Mm.209678	NM_001177348	ENSMUSG00000091937	Gm3646	-	predicted gene 3646	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-3982909-4	chr15	3982811	3983011	+	959.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_145930, exon 6 of 6)	3' UTR (NM_145930, exon 6 of 6)	-3338.0	NM_134099	106052.0	Mm.234191	NM_134099	ENSMUSG00000022184	Fbxo4	1700096C12Rik|AI851261|AW494535|Fbx4	F-box protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-108229593-2	chr11	108229493	108229693	+	559.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011101, intron 2 of 16)	intron (NM_011101, intron 2 of 16)	114295.0	NM_011101	18750.0	Mm.222178	NM_011101	ENSMUSG00000050965	Prkca	AI875142|Pkca	protein kinase C, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-88357257-4	chr7	88357155	88357355	+	844.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73018.0	NM_028238	72433.0	Mm.276669	NM_028238	ENSMUSG00000030559	Rab38	2310011F14Rik|AU043391|cht	RAB38, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-94522262-2	chr16	94522162	94522362	+	580.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007834, intron 1 of 7)	RSINE1|SINE|B4	4367.0	NM_007834	13185.0	Mm.7472	NM_007834	ENSMUSG00000022898	Dscr3	AW538125|Dcra	DSCR3 arrestin fold containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-88198673-4	chr6	88198559	88198759	+	862.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008090)	promoter-TSS (NM_008090)	-5.0	NM_008090	14461.0	Mm.491156	NM_008090	ENSMUSG00000015053	Gata2	Gata-2	GATA binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-102867868-4	chr14	102867761	102867961	+	965.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	114771.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-97950564-2	chr3	97950464	97950664	+	591.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033779, intron 1 of 1)	L1_Mur3|LINE|L1	20391.0	NM_001033779	433632.0	Mm.212421	NM_001033779		Gm5544	EG433632	predicted gene 5544	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-119175269-4	chr6	119175297	119175497	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001033379, exon 1 of 9)	exon (NM_001033379, exon 1 of 9)	144.0	NM_001033379	319618.0	Mm.250197	NM_001033379	ENSMUSG00000041477	Dcp1b	B930050E02Rik	decapping mRNA 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80666228-1	chr10	80666128	80666328	+	804.0	f0_balb.idr	3' UTR (NM_021462, exon 14 of 14)	3' UTR (NM_021462, exon 14 of 14)	-9157.0	NM_145361	208198.0	Mm.60720	NM_145361	ENSMUSG00000003344	Btbd2	2610037C03Rik|4930512K17Rik	BTB (POZ) domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99391428-2	chr15	99391326	99391526	+	694.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1521.0	NM_026669	110213.0	Mm.16769	NM_026669	ENSMUSG00000023010	Tmbim6	5031406P05Rik|Bi1|Tegt	transmembrane BAX inhibitor motif containing 6	protein-coding	1.89855591940539	2.57332702331693	3.46298852475598	4.19188731286066	2.42443075746959	2.19478245055914	3.41197753821586	3.96265292692957	-0.183303916834958	0.813192286655186	0.998431161219273
Merged-chr5-142908278-4	chr5	142908246	142908446	+	971.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1592.0	NM_007393	11461.0	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70003912-2	chr11	70003812	70004012	+	751.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007888, intron 1 of 14)	intron (NM_007888, intron 1 of 14)	3286.0	NM_007888	13543.0	Mm.5114	NM_007888	ENSMUSG00000020888	Dvl2	-	dishevelled segment polarity protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-62498730-2	chr10	62498630	62498830	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358965, intron 2 of 3)	RSINE1|SINE|B4	9027.0	NM_011157	19073.0	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-90491014-4	chr3	90490910	90491110	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133854)	promoter-TSS (NM_133854)	3.0	NM_133854	20615.0	Mm.331182	NM_133854	ENSMUSG00000001018	Snapin	25kDa|AA407989|AV026596|Bloc1s7|Snap25bp|Snapap	SNAP-associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-98749961-2	chr7	98749861	98750061	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46714.0	NM_028410	72981.0	Mm.4428	NM_028410	ENSMUSG00000030753	Thap12	2900052B10Rik|Dap4|Prkrir|Rpkrir	THAP domain containing 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-114628725-1	chr5	114628625	114628825	+	644.0	f1_c57bl6.idr	intron (NM_022017, intron 11 of 15)	intron (NM_022017, intron 11 of 15)	29696.0	NM_022017	63873.0	Mm.266450	NM_022017	ENSMUSG00000014158	Trpv4	0610033B08Rik|OTRPC4|Trp12|VR-OAC|VRL-2|VROAC	transient receptor potential cation channel, subfamily V, member 4	protein-coding	0.0386207137930744	1.41052075571841	0.058963473661386	0.0514182829417456	0.389919068870115	0.0707116561321497	0.0610988889756512	0.591712856074031	-1.34553966158845	0.508277320722641	1
Merged-chr9-51963427-4	chr9	51963315	51963515	+	983.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001301728, exon 1 of 4)	exon (NM_001301728, exon 1 of 4)	187.0	NM_001301728	14148.0	Mm.1061	NM_007996	ENSMUSG00000032051	Fdx1	-	ferredoxin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-96879051-1	chr7	96878951	96879151	+	794.0	f0_balb.idr	intron (NM_011858, intron 27 of 32)	intron (NM_011858, intron 27 of 32)	-72476.0	NM_153591	244141.0	Mm.274864	NM_153591	ENSMUSG00000018995	Nars2	AI875199	asparaginyl-tRNA synthetase 2 (mitochondrial)(putative)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-12305418-3	chr4	12305318	12305518	+	908.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-133403.0	NM_026558	68099.0	Mm.25340	NM_026558	ENSMUSG00000028218	Fam92a	6720467C03Rik|Fam92a1	family with sequence similarity 92, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-95705106-19	chr16	95705111	95705311	+	942.236816	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011809, intron 1 of 9)	intron (NM_011809, intron 1 of 9)	2804.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-126310077-3	chr4	126309976	126310176	+	875.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199473, intron 3 of 3)	intron (NM_199473, intron 3 of 3)	11627.0	NM_133883	100206.0	Mm.11285	NM_133883	ENSMUSG00000042558	Adprhl2	AI836109|Arh3	ADP-ribosylhydrolase like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-104793451-3	chr3	104793353	104793553	+	890.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007484, intron 4 of 4)	URR1A|DNA|hAT-Charlie	4419.0	NM_001291859	11853.0	Mm.262	NM_007484	ENSMUSG00000002233	Rhoc	AI324259|Arh9|Arhc	ras homolog family member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-170153025-3	chr2	170152929	170153129	+	704.044434	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-10354.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-57721224-4	chr10	57721153	57721353	+	811.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008863, intron 4 of 5)	intron (NM_008863, intron 4 of 5)	-63670.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-85464160-1	chr17	85464060	85464260	+	744.0	f0_balb.idr	Intergenic	Intergenic	154236.0	NR_038084	100043902.0	Mm.150838	NR_015385	ENSMUSG00000093460	Six3os1	D17Mgi26|E130112H22Rik|Rncr1|Six3os	SIX homeobox 3, opposite strand 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-77441201-3	chr11	77441105	77441305	+	752.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177710, intron 12 of 14)	intron (NM_177710, intron 12 of 14)	-22708.0	NM_139129	216961.0	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-77904371-4	chr14	77904282	77904482	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_178825, exon 1 of 7)	5' UTR (NM_178825, exon 1 of 7)	143.0	NM_029495	108670.0	Mm.68134	NM_029495	ENSMUSG00000022014	Epsti1	2310046K10Rik|5033415K03Rik|BRESI1	epithelial stromal interaction 1 (breast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-75146209-4	chr10	75146113	75146313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081412, intron 8 of 22)	intron (NM_001081412, intron 8 of 22)	-65860.0	NM_153406	74392.0	Mm.27716	NM_153406	ENSMUSG00000033444	Specc1l	4930470P14Rik|4932439K10Rik|9530057A13Rik|AI317249|Cytsa|mKIAA0376	sperm antigen with calponin homology and coiled-coil domains 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56186728-2	chr17	56186628	56186828	+	786.25	f1_balb.idr|f1_c57bl6.idr	TTS (NM_172624)	TTS (NM_172624)	-2808.0	NM_080837	28106.0	Mm.294870	NM_080837	ENSMUSG00000019579	Mydgf	D17Wsu104e|Il25|Ly6elg	myeloid derived growth factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-35739752-4	chr16	35739652	35739852	+	960.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153550, intron 2 of 8)	intron (NM_153550, intron 2 of 8)	29604.0	NM_153550	224132.0	Mm.24094	NM_153550	ENSMUSG00000022848	Dirc2	RCC4	disrupted in renal carcinoma 2 (human)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-32431279-3	chr12	32431194	32431394	+	842.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1C|Other|Other	52505.0	NM_001162903	72123.0	Mm.341352	NM_028111	ENSMUSG00000090946	Ccdc71l	2010109K11Rik|AV375874	coiled-coil domain containing 71 like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-65837382-4	chr14	65837323	65837523	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_145944, exon 1 of 9)	5' UTR (NM_145944, exon 1 of 9)	121.0	NM_145944	67179.0	Mm.214576	NM_145944	ENSMUSG00000022035	Ccdc25	2610528H13Rik|NSrp70	coiled-coil domain containing 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-46347358-4	chr17	46347283	46347483	+	892.491699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPEY3-int|LTR|ERVK	-19360.0	NM_170680	224814.0	Mm.76543	NM_145140	ENSMUSG00000032842	Abcc10	Mrp7|mFLJ00002	ATP-binding cassette, sub-family C (CFTR/MRP), member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100313771-2	chr11	100313671	100313871	+	727.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6178.0	NM_011508	20918.0	Mm.13886	NM_011508	ENSMUSG00000035530	Eif1	Sui1-rs1	eukaryotic translation initiation factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-85457609-2	chr6	85457509	85457709	+	612.599976	f1_balb.idr|f1_c57bl6.idr	intron (NM_007638, intron 1 of 11)	ORR1D1|LTR|ERVL-MaLR	-5639.0	NR_028081	73327.0	Mm.379221	NM_028505	ENSMUSG00000030008	Pradc1	1700040I03Rik|Pap21	protease-associated domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-115331183-4	chr6	115331068	115331268	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-29783.0	NM_001127330	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-24444905-4	chr13	24444805	24445005	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111110, intron 11 of 16)	L1MEf|LINE|L1	29783.0	NM_001284520	12763.0	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124916507-2	chr6	124916407	124916607	+	782.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_152158)	promoter-TSS (NR_152158)	-356.0	NR_152158	442825.0	Mm.446713	NR_152158	ENSMUSG00000055818	A230083G16Rik	-	RIKEN cDNA A230083G16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-45953574-4	chr9	45953458	45953658	+	999.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_152206)	promoter-TSS (NR_152206)	-428.0	NR_152206	100101457.0	Mm.397964	NR_152206	ENSMUSG00000111329	A830035O19Rik	-	RIKEN cDNA A830035O19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-101182199-2	chr9	101182117	101182317	+	804.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161362, intron 4 of 13)	intron (NM_001161362, intron 4 of 13)	16856.0	NM_172144	235542.0	Mm.335386	NM_172144	ENSMUSG00000043154	Ppp2r3a	3222402P14Rik|A730042E07	protein phosphatase 2, regulatory subunit B'', alpha	protein-coding	2.44990906843558	1.910533573987	3.13105681285214	2.83831936672517	1.88528429049707	2.6729052244564	2.34498601856419	1.34031925339232	-1.08567035511608	0.226196153432303	0.718850816408468
Merged-chr10-51534822-4	chr10	51534721	51534921	+	971.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	43923.0	NM_013532	14728.0	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-57483034-1	chr19	57482934	57483134	+	544.0	f0_balb.idr	intron (NM_029839, intron 4 of 6)	intron (NM_029839, intron 4 of 6)	-25530.0	NR_040306	78073.0	Mm.12411	NR_040306		6720468P15Rik	-	RIKEN cDNA 6720468P15 gene	ncRNA	2.20350866760657	2.46081675690022	2.74713983160647	2.94164561904205	2.65367790369681	2.96344463639071	2.76795986350615	2.68561179062207	0.303503916980305	0.670766969584811	0.99359666617512
Merged-chr17-7866894-2	chr17	7866794	7866994	+	611.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59106.0	NM_145968	72536.0	Mm.119680	NM_145968	ENSMUSG00000033450	Tagap	2610315E15Rik|TRD|Tcd-1|Tcd1|Tcd1a|tcs-1|tcs1	T cell activation Rho GTPase activating protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-57667203-4	chr3	57667122	57667322	+	734.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001033349)	TTS (NM_001033349)	-15538.0	NM_175095	52245.0	Mm.21901	NM_175095	ENSMUSG00000036513	Commd2	1190017G07Rik|AI047739|D3Ertd176e|HSPC042	COMM domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-53943774-2	chr5	53943674	53943874	+	718.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54749.0	NM_001081103	116873.0	Mm.265985	NM_054083	ENSMUSG00000039156	Stim2	-	stromal interaction molecule 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-40405459-2	chr1	40405359	40405559	+	636.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24111.0	NM_001294171	17082.0	Mm.289824	NM_010743	ENSMUSG00000026069	Il1rl1	DER4|Fit-1|Ly84|ST2L|St2|St2-rs1|T1|T1/ST2	interleukin 1 receptor-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45062012-2	chr7	45061912	45062112	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022999)	promoter-TSS (NM_022999)	-360.0	NM_022999	65116.0	Mm.379098	NM_022999	ENSMUSG00000007837	Prrg2	1600014G02Rik|2510041M06Rik|N4WBP1	proline-rich Gla (G-carboxyglutamic acid) polypeptide 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-136988278-2	chr5	136988178	136988378	+	919.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027318)	promoter-TSS (NM_027318)	-319.0	NM_027318	70103.0	Mm.273147	NM_027318	ENSMUSG00000059518	Znhit1	2700001K05Rik|ZNFN4A1	zinc finger, HIT domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-60367244-4	chr10	60367142	60367342	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028732, intron 4 of 6)	(CCCCCT)n|Simple_repeat|Simple_repeat	20391.0	NM_028732	74048.0	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21290640-2	chr9	21290540	21290740	+	586.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009878, intron 1 of 1)	intron (NM_009878, intron 1 of 1)	569.0	NM_009878	12581.0	Mm.29020	NM_009878	ENSMUSG00000096472	Cdkn2d	INK4d|p19|p19INK4d	cyclin dependent kinase inhibitor 2D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91395583-2	chr16	91395483	91395683	+	549.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347258, intron 7 of 7)	MER21C|LTR|ERVL	-10652.0	NM_008349	16155.0	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-151720449-2	chr1	151720349	151720549	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34278.0	NR_151474	102640772.0		NR_151473	ENSMUSG00000100594	2810414N06Rik	-	RIKEN cDNA 2810414N06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-45113702-2	chr2	45113599	45113799	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_001355289)	promoter-TSS (NM_001355289)	-420.0	NM_015753	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33933979-2	chr16	33933879	33934079	+	795.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 10 of 14)	intron (NM_001145884, intron 10 of 14)	33059.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-25679086-2	chr8	25678986	25679186	+	581.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081269, intron 9 of 22)	7SK|RNA|RNA	38509.0	NM_001081269	234135.0	Mm.217337	NM_001001735	ENSMUSG00000054823	Nsd3	6720429E03|A530023P05|AI528490|WHISTLE|Whsc1l1	nuclear receptor binding SET domain protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132816605-4	chr4	132816506	132816706	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20242.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-24636142-4	chr10	24636044	24636244	+	964.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40702.0	NM_010217	14219.0	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-67414291-4	chr15	67414188	67414388	+	836.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	187519.0	NR_045140	69334.0	Mm.63770	NR_045140	ENSMUSG00000102069	1700012I11Rik	-	RIKEN cDNA 1700012I11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6257765-2	chr19	6257665	6257865	+	975.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_194348, intron 31 of 39)	intron (NM_194348, intron 31 of 39)	-6878.0	NR_029830	723957.0		NR_029830	ENSMUSG00000065582	Mir194-2	Mirn194-2|mir-194-2	microRNA 194-2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-64967378-1	chr12	64967278	64967478	+	549.0	f0_balb.idr	exon (NM_177805, exon 1 of 20)	exon (NM_177805, exon 1 of 20)	1636.0	NM_177805	328108.0	Mm.138465	NM_177805	ENSMUSG00000035614	Togaram1	A430041B07Rik|BC062107|C130034K06|Fam179b|mKIAA0423	TOG array regulator of axonemal microtubules 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150627580-2	chr4	150627480	150627680	+	674.625	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24594.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135355657-2	chr4	135355557	135355757	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-2443.0	NM_001130477	51796.0	Mm.1963	NM_016799	ENSMUSG00000028809	Srrm1	AA407769|POP101|Srm160	serine/arginine repetitive matrix 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-86868392-2	chr10	86868292	86868492	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_138673, intron 51 of 68)	intron (NM_138673, intron 51 of 68)	89387.0	NM_175331	103466.0	Mm.200446	NM_175331	ENSMUSG00000054027	Nt5dc3	AU040402|AW540062|C630002B14Rik|TU12B1-TY	5'-nucleotidase domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-77689385-1	chr9	77689285	77689485	+	675.0	f0_balb.idr	Intergenic	Intergenic	52653.0	NM_172925	244923.0	Mm.138238	NM_172925	ENSMUSG00000044938	Klhl31	9830147P19Rik|D930047P17Rik|Kbtbd1	kelch-like 31	protein-coding	-1.7024385483431	-1.81249224917775	-1.82134771053534	-1.82862185015837	-1.70038292649591	-1.81057323376012	-1.81934302819017	-1.82731978264371	0.0376840119903864	0.991491645451152	1
Merged-chr18-54900108-4	chr18	54900020	54900220	+	973.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360787, intron 3 of 8)	intron (NM_001360787, intron 3 of 8)	90060.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-29453450-4	chr16	29453370	29453570	+	985.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164613, intron 13 of 21)	intron (NM_001164613, intron 13 of 21)	-74738.0	NM_175650	268878.0	Mm.9823	NM_175650	ENSMUSG00000048939	Atp13a5	C630015F21Rik	ATPase type 13A5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-25858263-4	chr15	25858180	25858380	+	907.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034851, intron 1 of 8)	intron (NM_001034851, intron 1 of 8)	14982.0	NM_001034851	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-116620066-4	chr12	116619891	116620091	+	886.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011215, intron 2 of 22)	intron (NM_011215, intron 2 of 22)	134271.0	NM_011215	19276.0	Mm.206054	NM_011215	ENSMUSG00000056553	Ptprn2	4930425H11Rik|IA2beta|PTP-NP|Phol|mKIAA0387|phogrin	protein tyrosine phosphatase, receptor type, N polypeptide 2	protein-coding	1.92403968159504	1.34655284639806	2.09309975803326	1.08115625546879	1.75787878609949	1.70989338585273	1.65475793008145	1.73400027837061	0.0689447451632384	0.950691133916136	0.998431161219273
Merged-chr9-121645085-2	chr9	121644985	121645185	+	932.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011703, intron 1 of 12)	intron (NM_011703, intron 1 of 12)	2369.0	NM_011703	22354.0	Mm.282007	NM_011703	ENSMUSG00000032528	Vipr1	AV071699|VIP-R1|VPAC1	vasoactive intestinal peptide receptor 1	protein-coding	0.862603334064889	2.16279953392263	0.934055019060796	2.68699157010951	0.869626512551903	2.18167569177102	0.941236970271602	2.70233593849038	0.0316239005393058	0.989847506557328	0.998431161219273
Merged-chr8-4675252-2	chr8	4675152	4675352	+	596.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	62082.0	NM_145591	233987.0	Mm.102799	NM_145591	ENSMUSG00000058748	Zfp958	-	zinc finger protein 958	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166682671-4	chr2	166682578	166682778	+	956.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	31154.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-90051009-2	chr3	90050909	90051109	+	696.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001287087)	promoter-TSS (NM_001287087)	-627.0	NM_001287087	99650.0	Mm.300083	NM_025762	ENSMUSG00000027942	4933434E20Rik	5730552F22Rik|AI462154|NICE-3|NS5ATP4	RIKEN cDNA 4933434E20 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-62920120-2	chr10	62920020	62920220	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175194)	promoter-TSS (NM_175194)	-513.0	NM_175194	73132.0	Mm.37457	NM_175194	ENSMUSG00000071253	Slc25a16	3110021G18Rik|GDA|GDC|HGT.1|ML7	solute carrier family 25 (mitochondrial carrier, Graves disease autoantigen), member 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-6666319-2	chr4	6666219	6666419	+	764.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-212048.0	NM_010945	18201.0	Mm.3059	NM_010945	ENSMUSG00000028245	Nsmaf	AA959567|C630007J05|Fan	neutral sphingomyelinase (N-SMase) activation associated factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114983806-2	chr11	114983724	114983924	+	586.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_145437, exon 4 of 4)	3' UTR (NM_145437, exon 4 of 4)	6062.0	NM_145437	217305.0	Mm.275986	NM_145437	ENSMUSG00000034641	Cd300ld	4732429D16Rik|CLM5|Cd300ld1|LMIR4|MAIR-IV|clm-5	CD300 molecule like family member d	protein-coding	1.74989563395161	2.09704028955515	1.18477124159668	0.933849725933988	2.02087765553495	2.00911820480983	1.19300897524544	0.936703499180197	0.168193065556662	0.894694971446549	0.998431161219273
Merged-chr5-28073805-1	chr5	28073705	28073905	+	676.0	f1_balb.idr	intron (NM_153526, intron 2 of 4)	intron (NM_153526, intron 2 of 4)	2393.0	NM_153526	231070.0	Mm.30221	NM_153526	ENSMUSG00000045294	Insig1	1810013C12Rik|Insig-1	insulin induced gene 1	protein-coding	-0.946189498902753	-0.931575358611085	-0.94076171000006	-0.942807383787865	-0.573918262386353	-0.929017710499158	-0.940175780086088	-0.522856136696833	2.89469829273601	0.348654519402419	1
Merged-chr1-37475643-4	chr1	37475674	37475874	+	847.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173870, intron 5 of 15)	intron (NM_173870, intron 5 of 15)	12831.0	NR_024017	77633.0	Mm.483177	NR_024017	ENSMUSG00000103948	4930594C11Rik	-	G1 to S phase transition pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-193130243-4	chr1	193130150	193130350	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_151719)	promoter-TSS (NR_151719)	1.0	NM_145415	215193.0	Mm.173758	NM_145415	ENSMUSG00000016181	Diexf	AA408296|AW045375|Def	digestive organ expansion factor homolog (zebrafish)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78591960-4	chr15	78591861	78592061	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L4_B_Mam|LINE|RTE-X	-5086.0	NM_028195	72318.0	Mm.32911	NM_028195	ENSMUSG00000018008	Cyth4	2510004M07Rik|5830469K17Rik|AI467541|Pscd4|mFLJ00017	cytohesin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-175693581-4	chr1	175693488	175693688	+	950.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010098)	promoter-TSS (NM_010098)	-956.0	NM_010098	13603.0	Mm.32744	NM_010098	ENSMUSG00000026525	Opn3	ERO|Ecpn	opsin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-26865584-2	chr18	26865484	26865684	+	649.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1111427.0	NM_001362334	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-55324212-2	chr13	55324112	55324312	+	551.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_016662)	TTS (NM_016662)	2157.0	NM_025596	66494.0	Mm.439805	NM_025596	ENSMUSG00000021486	Prelid1	2610524G07Rik|Preli	PRELI domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-83649976-3	chr13	83649854	83650054	+	946.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347576, intron 6 of 10)	intron (NM_001347576, intron 6 of 10)	-71427.0	NR_152244	320203.0	Mm.245636	NM_177100	ENSMUSG00000050334	C130071C03Rik	2810449C10Rik|ECONEXIN|EyeLinc1|Visc-1	RIKEN cDNA C130071C03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-60831563-4	chr10	60831461	60831661	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359273)	promoter-TSS (NM_001359273)	20.0	NM_029770	107449.0	Mm.290433	NM_029770	ENSMUSG00000020099	Unc5b	6330415E02Rik|A630020F16|D10Bwg0792e|Unc5h2	unc-5 netrin receptor B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-174474586-2	chr2	174474486	174474686	+	827.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1645.0	NM_025531	66390.0	Mm.182294	NM_025531	ENSMUSG00000016257	Prelid3b	2310042G06Rik|AA407013|Slmo2	PRELI domain containing 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-23608518-2	chr16	23608418	23608618	+	955.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1401.0	NM_023386	67775.0	Mm.475107	NM_023386	ENSMUSG00000033355	Rtp4	5830458K16Rik|Ifrg28	receptor transporter protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-119072410-2	chr10	119072310	119072510	+	701.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20495.0	NR_045348	73400.0	Mm.416864	NR_045348	ENSMUSG00000100681	1700064J06Rik	-	RIKEN cDNA 1700064J06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26584607-4	chr17	26584496	26584696	+	992.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026170, intron 1 of 9)	intron (NM_026170, intron 1 of 9)	23084.0	NM_026170	67458.0	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-173783921-4	chr2	173783791	173783991	+	972.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_019806, exon 6 of 6)	3' UTR (NM_019806, exon 6 of 6)	46320.0	NM_019806	56491.0	Mm.260456	NM_019806	ENSMUSG00000054455	Vapb	AI225786|AI840687|AI848259|D2Abb2e|R75548|VAP33b|Vamp33b	vesicle-associated membrane protein, associated protein B and C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-25275247-4	chr8	25275127	25275327	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31043.0	NR_040352	74489.0	Mm.256468	NR_040352	ENSMUSG00000110140	5430421F17Rik	-	RIKEN cDNA 5430421F17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-120053273-4	chr4	120053254	120053454	+	991.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010657, intron 2 of 8)	intron (NM_010657, intron 2 of 8)	-107852.0	NM_007902	13615.0	Mm.284855	NM_007902	ENSMUSG00000028635	Edn2	ET-2|PPET2|VIC	endothelin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-88405432-2	chr9	88405332	88405532	+	643.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359958, intron 8 of 28)	intron (NM_001359958, intron 8 of 28)	33519.0	NM_001359958	244962.0	Mm.439873	NM_172926	ENSMUSG00000032422	Snx14	B830022K16|C330035N22Rik|YR-14	sorting nexin 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-90475383-2	chr7	90475283	90475483	+	735.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_026734, intron 1 of 4)	intron (NM_026734, intron 1 of 4)	612.0	NM_026734	68472.0	Mm.289791	NM_026734	ENSMUSG00000030614	Tmem126b	1110001A23Rik	transmembrane protein 126B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-37685358-3	chr16	37685280	37685480	+	905.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31012.0	NM_026610	68194.0	Mm.379154	NM_026610	ENSMUSG00000022820	Ndufb4	0610006N12Rik|1300010H20Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-98831541-4	chr15	98831457	98831657	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016781)	promoter-TSS (NM_016781)	-49.0	NM_016781	19082.0	Mm.6670	NM_016781	ENSMUSG00000067713	Prkag1	AA571379|BB036179|Prkaac	protein kinase, AMP-activated, gamma 1 non-catalytic subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-102751164-2	chr2	102751093	102751293	+	829.583374	f0_balb.idr|f0_c57.idr	intron (NM_001077514, intron 6 of 10)	intron (NM_001077514, intron 6 of 10)	-4433.0	NR_153853	102637542.0	Mm.371582	NR_153852		Gm13872	-	predicted gene 13872	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25702593-1	chr7	25702493	25702693	+	541.0	f1_balb.idr	intron (NM_011577, intron 5 of 6)	B3|SINE|B2	15591.0	NM_011577	21803.0	Mm.248380	NM_011577	ENSMUSG00000002603	Tgfb1	TGF-beta1|TGFbeta1|Tgfb|Tgfb-1	transforming growth factor, beta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-72835123-1	chr9	72835023	72835223	+	572.0	f1_c57bl6.idr	intron (NM_175485, intron 2 of 19)	intron (NM_175485, intron 2 of 19)	27849.0	NM_175485	235472.0	Mm.31696	NM_175485	ENSMUSG00000036030	Prtg	A230098A12Rik|Igdcc5	protogenin	protein-coding	0.292320493828931	0.159710444619026	1.04212265748781	0.471543503135207	0.139588116188366	0.161281183226236	0.154263776419083	0.719708695350545	-1.35774072474422	0.493463902313307	1
Merged-chr10-95780193-8	chr10	95780046	95780246	+	803.55835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-160517.0	NM_001001932	216238.0	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	0.604515700596796	0.643843102925392	1.5134448357913	1.45825211996467	0.607038186329069	0.646662645908502	1.42481992043057	1.25755086370321	-0.373105671214986	0.819695660556369	0.998431161219273
Merged-chr2-26933486-4	chr2	26933402	26933602	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011512)	promoter-TSS (NM_011512)	9.0	NM_011512	20932.0	Mm.300594	NM_011512	ENSMUSG00000014867	Surf4	AL033340|AL033373|Surf-4	surfeit gene 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-45212659-2	chr14	45212559	45212759	+	955.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310534, intron 3 of 20)	B1_Mus2|SINE|Alu	6766.0	NM_172597	70561.0	Mm.28129	NM_172597	ENSMUSG00000021830	Txndc16	5730420B22Rik|C77647	thioredoxin domain containing 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-155413614-4	chr1	155413520	155413720	+	959.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011273, intron 1 of 14)	intron (NM_011273, intron 1 of 14)	3824.0	NM_011273	19775.0	Mm.266215	NM_011273	ENSMUSG00000026469	Xpr1	Rmc-1|Rmc1|Sxv|Syg1|XR	xenotropic and polytropic retrovirus receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-63668493-3	chr4	63668402	63668602	+	946.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34081.0	NR_151544	102632940.0	Mm.399154	NR_151544	ENSMUSG00000086817	Gm11482	-	predicted gene 11482	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116994537-2	chr11	116994437	116994637	+	786.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4_|SINE|ID	75674.0	NM_172948	268510.0	Mm.35141	NM_172948	ENSMUSG00000043857	Mgat5b	C330018B01|GnT-IX|mGnTVB	mannoside acetylglucosaminyltransferase 5, isoenzyme B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-148552686-4	chr5	148552610	148552810	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011908)	promoter-TSS (NM_011908)	78.0	NM_011908	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134752883-2	chr6	134752783	134752983	+	566.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_130447, intron 3 of 6)	intron (NM_130447, intron 3 of 6)	-39477.0	NR_151454	105242798.0	Mm.398227	NR_151454		1700055D16Rik	-	RIKEN cDNA 1700055D16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65140976-2	chr9	65140876	65141076	+	759.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008988)	promoter-TSS (NM_008988)	-178.0	NM_008988	19289.0	Mm.41529	NM_008988	ENSMUSG00000032394	Igdcc3	2810401C09Rik|AI851425|Punc|WI-14920	immunoglobulin superfamily, DCC subclass, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-107094235-1	chr3	107094135	107094335	+	608.5	f0_balb.idr	Intergenic	Intergenic	-7332.0	NM_008417	16490.0	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-109557340-6	chr5	109557160	109557360	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310694, intron 2 of 7)	intron (NM_001310694, intron 2 of 7)	1733.0	NM_016715	57914.0	Mm.35771	NM_016715	ENSMUSG00000033467	Crlf2	CRLM2|Ly114|Tpte2|Tslpr	cytokine receptor-like factor 2	protein-coding	4.92185418533331	5.19798324693975	5.46459442801335	4.56847768709513	5.26696218128688	6.06676304818112	5.11460660437252	5.21056414665999	0.455486455333632	0.173202734862346	0.640902961210202
Merged-chr19-46863759-4	chr19	46863648	46863848	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001102471, intron 4 of 6)	intron (NM_001102471, intron 4 of 6)	98603.0	NM_029810	76952.0	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3577971-2	chr19	3577871	3578071	+	610.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2222.0	NM_028999	52036.0	Mm.284686	NM_028999	ENSMUSG00000024908	Ppp6r3	4930528G08Rik|9130026N02Rik|D19Bwg1430e|D19Ertd703e|Pp6r3|Ppcs3|Pptcs3|Sapl|Saps3|mKIAA1558	protein phosphatase 6, regulatory subunit 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-40651602-7	chr9	40651500	40651700	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34364.0	NM_133733	71566.0	Mm.280560	NM_133733	ENSMUSG00000032024	Clmp	9030425E11Rik|ACAM|ASP5|AW557819	CXADR-like membrane protein	protein-coding	1.1080333942829	1.60451761657495	1.07254086719091	1.04178045591087	1.22483139401166	0.730659780999477	1.22192874444839	0.709958864139424	-1.01210883114373	0.473495889387418	0.926125823511231
Merged-chr19-51227940-3	chr19	51227836	51228036	+	755.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-549290.0	NM_001290356	58178.0	Mm.313672	NM_021377	ENSMUSG00000043531	Sorcs1	Sorcs|mSorCS	sortilin-related VPS10 domain containing receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100816316-4	chr11	100816217	100816417	+	729.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113563, intron 1 of 18)	intron (NM_001113563, intron 1 of 18)	6253.0	NM_011489	20851.0	Mm.34064	NM_011489	ENSMUSG00000020919	Stat5b	-	signal transducer and activator of transcription 5B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5877810-4	chr19	5877727	5877927	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361973)	promoter-TSS (NM_001361973)	5.0	NM_001361974	107375.0	Mm.5323	NM_134154	ENSMUSG00000024818	Slc25a45	AW491445	solute carrier family 25, member 45	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-103550637-4	chr14	103550534	103550734	+	955.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022886, intron 8 of 30)	intron (NM_022886, intron 8 of 30)	37293.0	NM_022886	64929.0	Mm.244003	NM_022886	ENSMUSG00000022123	Scel	9230114I02Rik	sciellin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-88482647-4	chr9	88482552	88482752	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019796)	promoter-TSS (NM_019796)	-255.0	NM_001284328	56403.0	Mm.260545	NM_019666	ENSMUSG00000032423	Syncrip	2610109K23Rik|4632417O19Rik|GRY-RBP|Nsap1|Nsap1l|hnRNP Q|pp68	synaptotagmin binding, cytoplasmic RNA interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-30763142-4	chr14	30763037	30763237	+	924.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166531, intron 2 of 21)	MTD|LTR|ERVL-MaLR	47522.0	NM_001166532	54650.0	Mm.294662	NM_019460	ENSMUSG00000006527	Sfmbt1	4930442N21Rik|9330180L21Rik|AA536974|Sfmbt|Smr	Scm-like with four mbt domains 1	protein-coding	1.61021840291339	1.83091703205258	0.931098772695493	1.58988024404031	0.894972882192307	0.953837861574397	1.98629636820863	1.91722497489963	0.0678484511384312	0.959375076107345	0.998431161219273
Merged-chr11-3504777-3	chr11	3504659	3504859	+	804.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172439)	promoter-TSS (NM_172439)	62.0	NM_172439	170835.0	Mm.24313	NM_172439	ENSMUSG00000034570	Inpp5j	Pib5pa|Pipp	inositol polyphosphate 5-phosphatase J	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-165762595-2	chr1	165762495	165762695	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1163.0	NR_149310	433375.0	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-62263814-2	chr4	62263714	62263914	+	659.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	-22615.0	NM_025286	20530.0	Mm.292539	NM_025286	ENSMUSG00000066152	Slc31a2	AI604396|CTR2	solute carrier family 31, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-158131360-2	chr2	158131251	158131451	+	662.875	f1_balb.idr|f1_c57bl6.idr	exon (NM_009373, exon 6 of 13)	exon (NM_009373, exon 6 of 13)	15041.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-10978569-3	chr16	10978441	10978641	+	741.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019980, intron 1 of 3)	intron (NM_019980, intron 1 of 3)	14580.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-121330196-4	chr9	121330070	121330270	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152160, intron 1 of 17)	B4|SINE|B4	32668.0	NR_152160	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-101900932-2	chr5	101900832	101901032	+	791.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 32 of 66)	intron (NM_172882, intron 32 of 66)	135802.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-32509235-2	chr9	32509135	32509335	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008026, intron 1 of 8)	intron (NM_008026, intron 1 of 8)	32217.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31200464-2	chr14	31200364	31200564	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347583, intron 3 of 13)	intron (NM_001347583, intron 3 of 13)	6362.0	NM_022656	64652.0	Mm.298728	NM_022656	ENSMUSG00000021910	Nisch	1200007D05Rik|3202002H23Rik|AW494485|I-1|edsn	nischarin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-95907066-4	chr15	95906973	95907173	+	965.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 3 of 19)	intron (NM_175344, intron 3 of 19)	-77001.0	NR_155276	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-33814852-1	chr17	33814752	33814952	+	598.0	f1_c57bl6.idr	intron (NM_030697, intron 1 of 10)	intron (NM_030697, intron 1 of 10)	4329.0	NM_030697	80880.0	Mm.196330	NM_030697	ENSMUSG00000042099	Kank3	0610013D04Rik|Ankrd47|D17Ertd288e|NG28	KN motif and ankyrin repeat domains 3	protein-coding	1.00309736100052	1.19201602413436	0.414547017464103	0.737820167690517	0.398057405320217	0.425257528414509	0.416482736404089	1.09313055873239	-1.26693684538118	0.482067514140999	1
Merged-chr9-74938823-3	chr9	74938724	74938924	+	866.361084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14056.0	NM_001359816	235493.0	Mm.208955	NM_153584	ENSMUSG00000034858	Fam214a	6330415I01Rik|AI553555|C130047D21Rik|Kiaa1370|mKIAA1370	family with sequence similarity 214, member A	protein-coding	1.3991619938961	1.31301274351746	1.13652585041288	1.2143120793413	0.622850807835835	0.655537148046626	0.645016648497518	0.972902145402257	-3.0843546001733	0.056017043682304	0.348836932578002
Merged-chr15-75904725-2	chr15	75904625	75904825	+	546.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029663, intron 2 of 9)	intron (NM_029663, intron 2 of 9)	4619.0	NM_001285433	66656.0	Mm.258927	NM_023240	ENSMUSG00000055762	Eef1d	EF-1-delta	eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-138066509-4	chr4	138066388	138066588	+	927.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001256195, intron 4 of 34)	intron (NM_001256195, intron 4 of 34)	68663.0	NM_001355700	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	4.14487580173567	4.23779086262448	2.58701953588127	3.8030333975637	4.64428864898881	4.14021821747495	3.79394851851469	3.8223294160808	0.438579132209044	0.398584169846803	0.884830307725783
Merged-chr2-117390350-4	chr2	117390247	117390447	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47470.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	2.40063357860327	1.33599367096987	3.1488316259118	2.62854729964996	1.97547119853768	1.34428889624021	2.89797345519192	2.08145475656603	-0.68991248429887	0.483909866626362	0.931207887927275
Merged-chr9-66124880-4	chr9	66124779	66124979	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019727)	promoter-TSS (NM_019727)	7.0	NM_019727	56440.0	Mm.271891	NM_019727	ENSMUSG00000032382	Snx1	-	sorting nexin 1	protein-coding	5.83200429983691	4.07069093925281	5.12038712687971	5.28227498628161	5.80375310083052	5.27511318908363	5.1192177517839	5.59302701772062	0.292700147929249	0.412560714980143	0.894783826796838
Merged-chr11-98342056-2	chr11	98341956	98342156	+	890.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6350.0	NM_144828	19049.0	Mm.45372	NM_144828	ENSMUSG00000061718	Ppp1r1b	AU040756|DARPP-32|Darpp32	protein phosphatase 1, regulatory (inhibitor) subunit 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-145210808-4	chr4	145210749	145210949	+	909.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TTTTG)n|Simple_repeat|Simple_repeat	-15844.0	NM_001276465	230895.0	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-21131367-4	chr5	21131271	21131471	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44908.0	NR_153366	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-123683891-3	chr9	123683794	123683994	+	702.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5062.0	NM_139142	102680.0	Mm.440867	NM_139142	ENSMUSG00000036814	Slc6a20a	A730081N20Rik|AU022428|Xt3s1|Xtrp3s1	solute carrier family 6 (neurotransmitter transporter), member 20A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101273737-2	chr15	101273637	101273837	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010444, intron 6 of 6)	intron (NM_010444, intron 6 of 6)	6891.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-162626090-1	chr1	162625990	162626190	+	641.0	f0_balb.idr	Intergenic	Intergenic	-13060.0	NM_010865	17926.0	Mm.10694	NM_010865	ENSMUSG00000026697	Myoc	AI957332|GLC1A|TIGR	myocilin	protein-coding	3.75380359156619	2.94971690049515	3.10386538179524	3.63608566781408	3.61131897943762	3.73669704717181	4.45645789798824	3.33566763986011	0.65012166615166	0.234777276802364	0.731086761108682
Merged-chr15-80216306-2	chr15	80216206	80216406	+	687.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_010795)	TTS (NM_010795)	-17774.0	NM_001357659	239555.0	Mm.307163	NM_178719	ENSMUSG00000022412	Mief1	A230016E22|AI452372|Smcr7l	mitochondrial elongation factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16057999-4	chr7	16057900	16058100	+	895.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13845.0	NM_001347559	666528.0	Mm.290718	NM_001099277	ENSMUSG00000078796	Zfp541	EG666528|Znf541	zinc finger protein 541	protein-coding	0.836592415483281	1.61948318974187	1.33960478115305	1.49807610214221	0.670723390430594	1.11777012559355	0.90419048948509	0.68598250725513	-2.43162661583034	0.0999935751376282	0.491824097226536
Merged-chr13-55826452-2	chr13	55826352	55826552	+	746.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_011097, exon 3 of 3)	exon (NM_011097, exon 3 of 3)	4973.0	NM_011097	18740.0	Mm.135195	NM_011097	ENSMUSG00000021506	Pitx1	Bft|P-OTX|Potx|Ptx1	paired-like homeodomain transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-53460136-4	chr6	53460024	53460224	+	963.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001327821, intron 5 of 10)	intron (NM_001327821, intron 5 of 10)	-113250.0	NM_172728	231991.0	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-146656062-1	chr3	146655962	146656162	+	589.0	f0_balb.idr	Intergenic	Intergenic	-4745.0	NM_029144	75015.0	Mm.250432	NM_029144	ENSMUSG00000048652	4930503B20Rik	1700013A07Rik|1700095G21Rik|4930483N21Rik|Gm1652|Samd13	RIKEN cDNA 4930503B20 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-57563083-4	chr18	57562994	57563194	+	746.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029290, intron 2 of 6)	intron (NM_029290, intron 2 of 6)	-10697.0	NR_015494	75084.0	Mm.243841	NR_015494	ENSMUSG00000086607	4930511M06Rik	-	RIKEN cDNA 4930511M06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-93579064-4	chr1	93578960	93579160	+	873.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145519, intron 12 of 26)	intron (NM_145519, intron 12 of 26)	56667.0	NM_021537	59041.0	Mm.28761	NM_021537	ENSMUSG00000026277	Stk25	1500019J11Rik|AU018434|C86992|Ste20-like|Ysk1	serine/threonine kinase 25 (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-79973686-2	chr10	79973586	79973786	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_130455, exon 3 of 9)	exon (NM_130455, exon 3 of 9)	2962.0	NM_130455	170483.0	Mm.391566	NM_130455	ENSMUSG00000035745	Grin3b	GluN3B|NR3B	glutamate receptor, ionotropic, NMDA3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-23821850-4	chr11	23821749	23821949	+	956.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50879.0	NM_009044	19696.0	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-8099945-4	chr14	8099847	8100047	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360314, intron 1 of 19)	intron (NM_001360314, intron 1 of 19)	1736.0	NM_001360315	218699.0	Mm.29515	NM_145458	ENSMUSG00000033885	Pxk	C230080L11Rik|D14Ertd813e|Monaka|Slob	PX domain containing serine/threonine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114745355-4	chr11	114745265	114745465	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034878, intron 8 of 12)	intron (NM_001034878, intron 8 of 12)	17953.0	NM_001034878	432611.0	Mm.212764	NM_001034878	ENSMUSG00000034706	Dnaic2	C030015H18Rik|Dnai2|Gm728|b2b3405Clo	dynein, axonemal, intermediate chain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-90365541-5	chr5	90365471	90365671	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198010, intron 1 of 32)	CpG	614.0	NM_030886	81702.0	Mm.245522	NM_030886	ENSMUSG00000055204	Ankrd17	4933425K22Rik|A130069E23Rik|A930008M01|AA407558|AA516750|AU040470|Foe|Gtar|Mask|mKIAA0697	ankyrin repeat domain 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-85351237-1	chr10	85351137	85351337	+	645.25	f0_c57.idr	Intergenic	L3|LINE|CR1	-35577.0	NM_028709	74007.0	Mm.36544	NM_028709	ENSMUSG00000020042	Btbd11	6330404E16Rik	BTB (POZ) domain containing 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-35740780-4	chr13	35740693	35740893	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001123386)	promoter-TSS (NM_001123386)	-609.0	NM_001123386	12593.0	Mm.29002	NM_009881	ENSMUSG00000059288	Cdyl	AI325931	chromodomain protein, Y chromosome-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-6215366-4	chr1	6215225	6215425	+	999.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009826, intron 1 of 23)	CpG	663.0	NM_009826	12421.0	Mm.293811	NM_009826	ENSMUSG00000025907	Rb1cc1	2900055E04Rik|5930404L04Rik|Cc1|FIP200|LaXp180	RB1-inducible coiled-coil 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-149711783-2	chr4	149711683	149711883	+	621.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER21C|LTR|ERVL	-10154.0	NM_001029837	18707.0	Mm.229108	NM_008840	ENSMUSG00000039936	Pik3cd	2410099E07Rik|2610208K16Rik|AW545373|p110delta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding	-1.50582186646592	-1.3193271303908	-1.32912132584896	-1.33716656961222	-1.5035483358901	-1.47131209496262	-1.48101154226494	-1.48983388241019	-2.08880576747839	0.507482996610487	1
Merged-chr19-55936578-2	chr19	55936478	55936678	+	964.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41257.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-23433441-2	chr18	23433339	23433539	+	664.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361217, intron 1 of 20)	Lx3_Mus|LINE|L1	18030.0	NM_001361217	13527.0	Mm.94371	NM_010087	ENSMUSG00000024302	Dtna	2210407P21Rik|DTN-A|Dtn|Gm19389|a-DB-1|adbn	dystrobrevin alpha	protein-coding	0.0175695507817839	-0.115151855207583	-0.12058725878388	0.52516849798256	-0.130746733511204	-0.113928581388627	-0.119387207292586	0.623422298570992	0.0654159858706845	0.977443052950159	1
Merged-chr1-36275264-2	chr1	36275164	36275364	+	765.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1839.0	NM_153408	214854.0	Mm.389110	NM_153408	ENSMUSG00000047180	Neurl3	2010300P06Rik|Lincr	neuralized E3 ubiquitin protein ligase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45415263-2	chr7	45415163	45415363	+	635.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198190, intron 2 of 2)	intron (NM_198190, intron 2 of 2)	1568.0	NM_198190	78405.0	Mm.20344	NM_198190	ENSMUSG00000074121	Ntf5	2900040K06Rik|AI462899|NT-4|NT-5|NT4|NT4/5|Ntf-5|Ntf4	neurotrophin 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-51667877-1	chr1	51667777	51667977	+	883.3333130000001	f0_c57.idr	Intergenic	Intergenic	-71159.0	NR_151621	100045066.0	Mm.404734	NR_151621		Gm17767	-	predicted gene, 17767	ncRNA	1.2727738282714	1.18447841861909	1.33576668732243	0.834209989724671	0.483224647645156	0.51396623668674	0.504061355233286	0.495535359779672	-4.63655968780347	0.00623044355820733	0.0786422716204015
Merged-chr15-58632405-7	chr15	58632303	58632503	+	933.857178	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	191024.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-30962435-3	chr5	30962349	30962549	+	849.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2122.0	NM_016703	50907.0	Mm.272414	NM_016703	ENSMUSG00000045302	Preb	C85705	prolactin regulatory element binding	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118396291-2	chr11	118396191	118396391	+	924.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011150, intron 5 of 5)	intron (NM_011150, intron 5 of 5)	5668.0	NM_011150	19039.0	Mm.3152	NM_011150	ENSMUSG00000033880	Lgals3bp	90K|CyCAP|MAC-2BP|Ppicap|Tango10b	lectin, galactoside-binding, soluble, 3 binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-50823442-2	chr14	50823340	50823540	+	624.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_009351)	TTS (NM_009351)	15524.0	NM_009632	11546.0	Mm.281482	NM_009632	ENSMUSG00000036023	Parp2	ADPRT-2|ARTD2|Adprt2|Adprtl2|Aspartl2|C78626|PARP-2|mPARP-2|pADPRT-2	poly (ADP-ribose) polymerase family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-119446645-4	chr8	119446543	119446743	+	747.354187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_054095)	promoter-TSS (NM_054095)	-76.0	NM_054095	117148.0	Mm.356184	NM_054095	ENSMUSG00000031837	Necab2	Efcbp2	N-terminal EF-hand calcium binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-4438234-4	chr18	4438137	4438337	+	857.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	62645.0	NM_001361009	67440.0	Mm.49826	NM_026157	ENSMUSG00000024234	Mtpap	0610027A18Rik|AW551379|Papd1	mitochondrial poly(A) polymerase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-24786092-1	chr12	24785992	24786192	+	833.0	f0_balb.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-45507.0	NM_026037	67216.0	Mm.167671	NM_026037	ENSMUSG00000020646	Mboat2	2810049G06Rik|AU022889|AW547221|LPCAT4|Moact2|Oact2	membrane bound O-acyltransferase domain containing 2	protein-coding	-0.333863995900554	-0.324932383893018	-0.178255449726021	-0.330158292083433	-0.0103839587335706	-0.156396658248038	-0.174323389343744	-0.0686647906322384	2.49214971068497	0.265672664292976	1
Merged-chr9-96712906-1	chr9	96712806	96713006	+	645.0	f0_balb.idr	intron (NM_001359959, intron 2 of 2)	ID_B1|SINE|B4	6539.0	NM_001359960	245007.0	Mm.485954	NM_175537	ENSMUSG00000040433	Zbtb38	A930014K01Rik|CIBZ	zinc finger and BTB domain containing 38	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-8777875-3	chr13	8777771	8777971	+	933.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	93173.0	NM_001039389	207615.0	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-57556403-4	chr16	57556285	57556485	+	721.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177871, intron 1 of 1)	intron (NM_001177871, intron 1 of 1)	7143.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	2.99777735674489	3.00154984190171	2.90133195923654	2.34539076516128	2.78818461434736	3.02344694336468	3.34006017802427	1.80445447125116	0.0320785641499247	0.965342530771132	0.998431161219273
Merged-chr1-153742667-2	chr1	153742567	153742767	+	614.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_011267, intron 4 of 4)	intron (NM_011267, intron 4 of 4)	2314.0	NM_011267	19734.0	Mm.181709	NM_011267	ENSMUSG00000026475	Rgs16	Rgs14|Rgsr	regulator of G-protein signaling 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-26755791-4	chr11	26755708	26755908	+	989.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-29300.0	NR_002890	654472.0	Mm.347777	NR_002890		Gm12070	-	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	2.81905256038904	2.97030983147992	2.52763608433208	2.88336738809134	2.84228769150605	2.76682865132202	1.56344960448824	3.33827192101287	-0.0468594553778862	0.951595925914943	0.998431161219273
Merged-chr3-89281258-6	chr3	89281188	89281388	+	763.111084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162425)	promoter-TSS (NM_001162425)	-337.0	NM_001162425	13636.0	Mm.15675	NM_010107	ENSMUSG00000027954	Efna1	AI325262|B61|Efl1|Epl1|Eplg1|Lerk1	ephrin A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-25571072-3	chr9	25570989	25571189	+	705.083313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 3 of 7)	intron (NM_026189, intron 3 of 7)	89492.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-8327007-4	chr12	8326892	8327092	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021429, intron 4 of 6)	intron (NM_021429, intron 4 of 6)	13559.0	NM_021429	58240.0	Mm.309954	NM_021429	ENSMUSG00000020605	Hs1bp3	-	HCLS1 binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-109407273-2	chr4	109407173	109407373	+	687.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_153392, intron 1 of 17)	CpG	173.0	NM_153392	230603.0	Mm.33091	NM_153392	ENSMUSG00000028555	Ttc39a	4922503N01Rik	tetratricopeptide repeat domain 39A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-144250601-4	chr1	144250518	144250718	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1514.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-158110296-2	chr2	158110196	158110396	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur2|SINE|Alu	-18499.0	NR_040609	72340.0	Mm.443395	NR_040609	ENSMUSG00000100860	2010009K17Rik	-	RIKEN cDNA 2010009K17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-101659220-4	chr13	101659124	101659324	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33406.0	NM_001024955	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-6361002-2	chr7	6360902	6361102	+	578.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER21B|LTR|ERVL	-2306.0	NM_001025163	330463.0	Mm.136456	NM_177888	ENSMUSG00000055150	Zfp78	A330079D15|KRAB12|Zfp77	zinc finger protein 78	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-189688204-4	chr1	189688115	189688315	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081363)	promoter-TSS (NM_001081363)	-129.0	NM_001081363	108000.0	Mm.129746	NM_001081363	ENSMUSG00000026605	Cenpf	6530404A22Rik|AI325968|CENF|Lek1|PRO1779|mitosin	centromere protein F	protein-coding	4.90001111553441	4.28689375872898	5.25947053616473	5.51233322133057	4.69686631242578	4.99898089172432	5.26272578715657	5.53555556769563	0.105581542455721	0.764922455214867	0.998431161219273
Merged-chr7-109960481-4	chr7	109960386	109960586	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021494)	promoter-TSS (NM_021494)	-16.0	NM_001311139	19347.0	Mm.21904	NM_021494	ENSMUSG00000035901	Dennd5a	1500012B19Rik|AJ245569|AW496491|ORF37|Rab6ip1|mKIAA1091	DENN/MADD domain containing 5A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-11436336-1	chr2	11436236	11436436	+	771.0	f1_balb.idr	Intergenic	RLTR27|LTR|ERVK	-37836.0	NR_040615	77543.0	Mm.490670	NR_040615	ENSMUSG00000102674	8030442B05Rik	-	RIKEN cDNA 8030442B05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-57895023-2	chr15	57894934	57895134	+	841.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-2616.0	NM_024207	67819.0	Mm.289387	NM_024207	ENSMUSG00000022365	Derl1	1110021N07Rik|AI195141|AW551338|Derlin-1	Der1-like domain family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-91171669-4	chr10	91171549	91171749	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011605)	promoter-TSS (NM_011605)	-30.0	NM_001080130	21917.0	Mm.159684	NM_011605	ENSMUSG00000019961	Tmpo	5630400D24Rik|AI195756|AI606875|AW214352|AW547477|LAP2|TP	thymopoietin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-44346613-1	chr16	44346513	44346713	+	544.0	f1_balb.idr	promoter-TSS (NM_144550)	promoter-TSS (NM_144550)	-788.0	NM_144550	212514.0	Mm.24035	NM_144550	ENSMUSG00000043065	Spice1	Ccdc52|D16Ertd480e	spindle and centriole associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4497765-2	chr19	4497665	4497865	+	859.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_027237, intron 1 of 1)	intron (NM_027237, intron 1 of 1)	818.0	NM_027237	69861.0	Mm.282978	NM_027237	ENSMUSG00000042041	2010003K11Rik	-	RIKEN cDNA 2010003K11 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-109207644-3	chr4	109207538	109207738	+	717.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5366.0	NM_001346502	100273.0	Mm.366315	NM_133885	ENSMUSG00000028559	Osbpl9	2600011I06Rik|AU015843|Orp-9	oxysterol binding protein-like 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75881414-2	chr11	75881314	75881514	+	920.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_029548, intron 3 of 7)	MLT1A|LTR|ERVL-MaLR	29645.0	NM_029548	380714.0	Mm.425697	NM_029548	ENSMUSG00000020847	Rph3al	Gm1753|Noc2	rabphilin 3A-like (without C2 domains)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115010419-4	chr11	115010250	115010450	+	805.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8470.0	NM_134158	140497.0	Mm.2699	NM_134158	ENSMUSG00000044811	Cd300c2	CLM4|Cd300c|Cd300d|DIgR1|Igsf7|Lmir2|MAIR-II	CD300C molecule 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-34336969-4	chr5	34336840	34337040	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001304270)	promoter-TSS (NM_001304270)	8.0	NM_001304270	19822.0	Mm.21281	NM_011278	ENSMUSG00000029110	Rnf4	AU018689|Gtrgeo8|SNURF	ring finger protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-60832908-3	chr9	60832810	60833010	+	880.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357408, intron 1 of 19)	L1MB2|LINE|L1	38468.0	NM_001357407	72565.0	Mm.68819	NM_028283	ENSMUSG00000034485	Uaca	2700059D02Rik|nucling	uveal autoantigen with coiled-coil domains and ankyrin repeats	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-181288127-4	chr2	181288044	181288244	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198169)	promoter-TSS (NM_198169)	-178.0	NM_198169	229004.0	Mm.220423	NM_198169	ENSMUSG00000038705	Gmeb2	AI839884	glucocorticoid modulatory element binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-64083494-2	chr7	64083394	64083594	+	616.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TACTG)n|Simple_repeat|Simple_repeat	-70341.0	NM_001039104	17364.0	Mm.38875	NM_018752	ENSMUSG00000030523	Trpm1	4732499L03Rik|AI606771|Ltrpc1|Mlsn1	transient receptor potential cation channel, subfamily M, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135407596-2	chr5	135407496	135407696	+	579.75	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_146001, exon 31 of 31)	3' UTR (NM_146001, exon 31 of 31)	-13050.0	NM_148932	107939.0	Mm.28399	NM_148932	ENSMUSG00000053293	Pom121	2610027A18Rik|C80273|mKIAA0618	nuclear pore membrane protein 121	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-113015261-4	chr12	113015194	113015394	+	962.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081170, intron 1 of 23)	intron (NM_001081170, intron 1 of 23)	786.0	NM_001291444	217893.0	Mm.35754	NM_198165	ENSMUSG00000021143	Pacs2	6720425G15Rik|AW208651|AW489976|E230011J22|Pacs1l|mKIAA0602	phosphofurin acidic cluster sorting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-23272365-4	chr16	23272267	23272467	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252505, intron 2 of 7)	intron (NM_001252505, intron 2 of 7)	-18103.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-92216380-4	chr1	92216273	92216473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	-36032.0	NM_207225	208727.0	Mm.318567	NM_207225	ENSMUSG00000026313	Hdac4	4932408F19Rik|HD4	histone deacetylase 4	protein-coding	5.0572965822133	5.00708593948138	6.25831768225952	5.14040083124721	5.30946994034819	4.79402852416868	6.37278586979127	4.98874073778697	0.0473882624048984	0.904464959630984	0.998431161219273
Merged-chr6-136652703-1	chr6	136652603	136652803	+	582.0	f1_balb.idr	intron (NM_025806, intron 1 of 10)	intron (NM_025806, intron 1 of 10)	9190.0	NM_025806	66857.0	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	2.98952003046637	2.1588342467724	3.02349508476735	1.60478804697008	3.29623243447864	1.97128142511378	3.26913819867235	1.33948800275607	0.28605979048115	0.759117278418241	0.998431161219273
Merged-chr2-30965414-2	chr2	30965314	30965514	+	677.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144884, intron 2 of 4)	intron (NM_144884, intron 2 of 4)	2504.0	NM_144884	30931.0	Mm.154994	NM_144884	ENSMUSG00000026849	Tor1a	DQ2|Dyt1|torsinA	torsin family 1, member A (torsin A)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-100216315-4	chr15	100216199	100216399	+	828.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001159361, exon 38 of 38)	3' UTR (NM_001159361, exon 38 of 38)	-11560.0	NM_007497	11908.0	Mm.676	NM_007497	ENSMUSG00000023027	Atf1	-	activating transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-34316972-2	chr6	34316872	34317072	+	930.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_037965, intron 1 of 9)	intron (NR_037965, intron 1 of 9)	471.0	NR_037965	626009.0	Mm.451	NR_028277		Gm6644	Akr1b3p|EG626009	Akr1b3 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-142089050-4	chr4	142088941	142089141	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_027137)	TTS (NR_027137)	-4737.0	NM_145402	214359.0	Mm.27587	NM_145402	ENSMUSG00000040616	Tmem51	BC003277	transmembrane protein 51	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-65026375-1	chr14	65026275	65026475	+	582.0	f0_balb.idr	intron (NM_153414, intron 10 of 16)	intron (NM_153414, intron 10 of 16)	71731.0	NM_018788	54616.0	Mm.103748	NM_018788	ENSMUSG00000021978	Extl3	2900009G18Rik|AU040105|Ext1l|mKIAA0519	exostoses (multiple)-like 3	protein-coding	1.27255940925865	1.42350617643364	1.08511435982184	1.06446831785616	1.76533896076344	1.43415232125754	0.911582953307647	1.45841240313425	0.93089572040113	0.465629893847618	0.922736970596151
Merged-chr8-80982840-1	chr8	80982740	80982940	+	758.0	f1_c57bl6.idr	intron (NM_027554, intron 9 of 9)	intron (NM_027554, intron 9 of 9)	32066.0	NM_027554	74841.0	Mm.246018	NM_027554	ENSMUSG00000038250	Usp38	4631402N15Rik|4833420O05Rik|AA536967|AU044701|AW544820|mKIAA1891	ubiquitin specific peptidase 38	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-97361867-4	chr15	97361798	97361998	+	863.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172293, intron 4 of 5)	intron (NM_172293, intron 4 of 5)	-114611.0	NM_001164602	105827.0	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-23337487-4	chr16	23337397	23337597	+	878.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252505, intron 5 of 7)	intron (NM_001252505, intron 5 of 7)	47027.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-156025595-1	chr2	156025495	156025695	+	627.0	f1_balb.idr	intron (NM_001136556, intron 35 of 44)	intron (NM_001136556, intron 35 of 44)	17567.0	NM_001356413	66366.0	Mm.141276	NM_025516	ENSMUSG00000005881	Ergic3	2310015B14Rik|AV318804|CGI-54|D2Ucla1|NY-BR-84|Sdbcag84	ERGIC and golgi 3	protein-coding	0.185303126844606	-0.12452200556898	-0.127953852238444	-0.130573497576199	-0.134233580397234	0.307632140688595	-0.12720046844228	0.330463141887583	1.58948899138792	0.508805493125129	1
Merged-chr14-45664101-2	chr14	45664003	45664203	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5960.0	NM_001042719	114874.0	Mm.121918	NM_176845	ENSMUSG00000037697	Ddhd1	Mir5131|PA-PLA1	DDHD domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-91182151-3	chr10	91182052	91182252	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	tRNA-Asp-GAY|tRNA|tRNA	-10533.0	NM_001080130	21917.0	Mm.159684	NM_011605	ENSMUSG00000019961	Tmpo	5630400D24Rik|AI195756|AI606875|AW214352|AW547477|LAP2|TP	thymopoietin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150009556-1	chr4	150009456	150009656	+	897.6666869999999	f0_balb.idr	promoter-TSS (NM_173371)	promoter-TSS (NM_173371)	-533.0	NM_173371	100198.0	Mm.22183	NM_173371	ENSMUSG00000028980	H6pd	AI785303|G6pd1|Gpd-1|Gpd1	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-61542702-2	chr8	61542602	61542802	+	706.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081390, intron 10 of 19)	intron (NM_001081390, intron 10 of 19)	48467.0	NM_001293774	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-120835093-4	chr7	120834993	120835193	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7738.0	NM_007908	13631.0	Mm.25997	NM_007908	ENSMUSG00000035064	Eef2k	C86191|eEF-2K	eukaryotic elongation factor-2 kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117079903-4	chr8	117079813	117080013	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029686, intron 3 of 42)	intron (NM_029686, intron 3 of 42)	2536.0	NM_029686	76645.0	Mm.159753	NM_029686	ENSMUSG00000034416	Pkd1l2	1700126L06Rik	polycystic kidney disease 1 like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-111115892-4	chr5	111115769	111115969	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001267622, intron 5 of 22)	intron (NM_001267622, intron 5 of 22)	111725.0	NR_030482	735278.0		NR_030482	ENSMUSG00000076163	Mir701	Mirn701|mir-701|mmu-mir-701	microRNA 701	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-29247444-4	chr11	29247370	29247570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025740)	promoter-TSS (NM_025740)	-198.0	NM_025740	216618.0	Mm.128663	NM_025740	ENSMUSG00000020462	Cfap36	2300003H10|4931428D14Rik|Ccdc104	cilia and flagella associated protein 36	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-64309245-1	chr13	64309145	64309345	+	722.0	f0_balb.idr	intron (NM_025370, intron 2 of 5)	intron (NM_025370, intron 2 of 5)	3465.0	NM_025370	66129.0	Mm.491110	NM_025370	ENSMUSG00000021482	Aaed1	1110018J18Rik|AI849003	AhpC/TSA antioxidant enzyme domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-59186572-3	chr3	59186493	59186693	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302203, intron 1 of 2)	intron (NM_001302203, intron 1 of 2)	8511.0	NM_001302203	84111.0	Mm.60267	NM_032399	ENSMUSG00000051431	Gpr87	-	G protein-coupled receptor 87	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-43729102-4	chr11	43728984	43729184	+	916.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_133795)	TTS (NM_133795)	18889.0	NM_133795	66827.0	Mm.271974	NM_133795	ENSMUSG00000041278	Ttc1	4833412C19Rik|C79328|TPR1	tetratricopeptide repeat domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-58822895-2	chr15	58822795	58822995	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_175212, exon 1 of 7)	exon (NM_175212, exon 1 of 7)	532.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-112671880-4	chr13	112671784	112671984	+	962.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178746, intron 2 of 14)	Kanga1|DNA|TcMar-Tc2	11118.0	NM_178746	268706.0	Mm.40834	NM_175376	ENSMUSG00000047789	Slc38a9	4833412L08Rik|6720411P22Rik|9130023D20Rik|9430067K09Rik|A730092C09	solute carrier family 38, member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-83705919-3	chr2	83705813	83706013	+	892.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6B|LTR|ERVK	-18484.0	NM_008402	16410.0	Mm.227	NM_008402	ENSMUSG00000027087	Itgav	1110004F14Rik|2610028E01Rik|CD51|D430040G12Rik	integrin alpha V	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-61599537-4	chr14	61599422	61599622	+	982.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023233)	promoter-TSS (NM_023233)	10.0	NM_023233	66597.0	Mm.491258	NM_023233	ENSMUSG00000035235	Trim13	3110001L12Rik|CAR|LEU5|RNF77|Rfp2	tripartite motif-containing 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-76579598-4	chr13	76579494	76579694	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030174, intron 1 of 20)	intron (NM_030174, intron 1 of 20)	194633.0	NM_030174	78771.0	Mm.316249	NM_030174	ENSMUSG00000021596	Mctp1	2810465F10Rik	multiple C2 domains, transmembrane 1	protein-coding	3.56655698159823	5.20672400463015	3.57100114424884	3.94388298714992	2.93343634695102	2.0959918405474	3.51272697578827	3.30737541957634	-1.71657205486588	0.00514932574441864	0.0684430086653458
Merged-chr16-95832343-2	chr16	95832243	95832443	+	894.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040485, exon 4 of 4)	non-coding (NR_040485, exon 4 of 4)	66370.0	NR_040485	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-12571103-3	chr19	12570992	12571192	+	723.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2418.0	NM_001346545	107373.0	Mm.1643	NM_026640	ENSMUSG00000024691	Fam111a	4632417K18Rik|AW413625	family with sequence similarity 111, member A	protein-coding	4.18719931310237	4.72204658028336	3.11797556294634	4.09458454620064	2.63089426491159	4.09838733098338	2.17766993421316	1.55229578520044	-1.679209870167	0.123510022496262	0.550882249037229
Merged-chr5-8672075-4	chr5	8671995	8672195	+	883.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011076, intron 5 of 29)	intron (NM_011076, intron 5 of 29)	-49143.0	NM_198620	242819.0	Mm.332192	NM_198620	ENSMUSG00000040570	Rundc3b	Gm440	RUN domain containing 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-53600860-3	chr19	53600780	53600980	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007790, intron 1 of 28)	CpG	484.0	NM_007790	13006.0	Mm.14910	NM_007790	ENSMUSG00000024974	Smc3	Bamacan|Cspg6|HCAP|Mmip1|SMC-3|SmcD	structural maintenance of chromosomes 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127574559-2	chr10	127574459	127574659	+	832.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 26 of 88)	intron (NM_008512, intron 26 of 88)	-40000.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	1.6842606045637	2.67787175759782	2.21629989969906	2.34527967786844	1.15268242091452	2.05699773342719	1.66634939494993	1.78221122281326	-1.53719073618683	0.125510442706866	0.555126919979226
Merged-chr2-155512601-2	chr2	155512495	155512695	+	973.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144786, intron 1 of 14)	intron (NM_144786, intron 1 of 14)	2251.0	NM_144786	207182.0	Mm.41757	NM_144786	ENSMUSG00000027603	Ggt7	1110017C11Rik|6330563L03Rik|Ggtl3	gamma-glutamyltransferase 7	protein-coding	-0.712667256763412	-0.946592317974238	-0.789971318026717	-0.957872846640456	-0.96047539195622	-0.767401237774307	-0.955289234500287	-0.80171882406823	-0.357438901003714	0.89773402343687	1
Merged-chr14-20825102-4	chr14	20825003	20825203	+	926.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB2|LINE|L1	-11559.0	NM_008873	18792.0	Mm.4183	NM_008873	ENSMUSG00000021822	Plau	u-PA|uPA	plasminogen activator, urokinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-39460987-4	chr18	39460876	39461076	+	890.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008173, intron 1 of 7)	intron (NM_008173, intron 1 of 7)	26269.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-137357733-4	chr4	137357616	137357816	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001243769)	promoter-TSS (NM_001243769)	43.0	NM_009861	12540.0	Mm.1022	NM_009861	ENSMUSG00000006699	Cdc42	AI747189|AU018915	cell division cycle 42	protein-coding	-0.986120736994583	-0.969371152505656	-0.528398005185418	-0.982677690072504	-0.985609359348878	-0.966813441431418	-0.649143994241476	-0.982314641938362	-0.515951406040895	0.871389805080857	1
Merged-chr15-22483921-2	chr15	22483845	22484045	+	858.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	231039.0	NM_001165971	545091.0	Mm.475598	NM_001165971		Hnrnpa1l2-ps2	EG545091|Gm5803	heterogeneous nuclear ribonucleoprotein A1-like 2, pseudogene 2	protein-coding	0.330275319488493	0.767247133977868	0.723542568052825	0.355980107162404	0.20672195906407	0.22117246593224	0.513764185589723	0.21240087969746	-2.315623248235	0.23284969603528	1
Merged-chr7-127008897-4	chr7	127008801	127009001	+	999.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080638, intron 1 of 14)	intron (NM_080638, intron 1 of 14)	5693.0	NM_080638	78388.0	Mm.228797	NM_080638	ENSMUSG00000030681	Mvp	2310009M24Rik|LRP|VAULT1	major vault protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-34080092-3	chr4	34079987	34080187	+	842.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC-int|LTR|ERVL-MaLR	-30020.0	NM_026293	67652.0	Mm.55848	NM_026293	ENSMUSG00000028264	Spaca1	1700124L11Rik|4930540L03Rik	sperm acrosome associated 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-73263263-4	chr17	73263156	73263356	+	939.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	136040.0	NM_001033444	381122.0	Mm.81496	NM_001033444	ENSMUSG00000043705	Capn13	CANP 13|Gm943	calpain 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-26709880-2	chr18	26709780	26709980	+	574.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-955723.0	NM_001362334	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-117919422-1	chr6	117919322	117919522	+	555.0	f1_balb.idr	intron (NM_001166429, intron 3 of 3)	intron (NM_001166429, intron 3 of 3)	2128.0	NM_001166427	98758.0	Mm.422979	NM_133834	ENSMUSG00000042079	Hnrnpf	4833420I20Rik|AA407306|Hnrpf	heterogeneous nuclear ribonucleoprotein F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24171316-4	chr17	24171201	24171401	+	956.18335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-1623.0	NM_001361531	11984.0	Mm.30155	NM_009729	ENSMUSG00000024121	Atp6v0c	Atp6c|Atp6c2|Atp6l|Atpl|Atpl-rs1|PL16|VATL|Vma3	ATPase, H+ transporting, lysosomal V0 subunit C	protein-coding	-1.06932346315282	-1.04545378193536	-0.220844647149311	-1.06494782147003	-1.06867040657128	-1.04264807175102	-1.05547001227371	-1.06448932552894	-3.08190232315036	0.346744811462451	1
Merged-chr19-17361400-4	chr19	17361311	17361511	+	885.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010265, intron 1 of 2)	MTD|LTR|ERVL-MaLR	-4744.0	NM_173442	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	3.79722386698636	4.11759120898027	2.08163983626957	3.52362161061665	4.58694244471685	4.0130058739351	3.27259442510221	4.22037052246245	0.760465672247187	0.190917448343439	0.669546561020494
Merged-chr12-99626495-3	chr12	99626381	99626581	+	559.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045288, intron 1 of 1)	B1F2|SINE|Alu	1493.0	NR_045288	73457.0	Mm.383439	NR_045288	ENSMUSG00000100211	1700064M15Rik	-	RIKEN cDNA 1700064M15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91406277-4	chr16	91406164	91406364	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008349)	promoter-TSS (NM_008349)	29.0	NM_008349	16155.0	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-149841112-4	chr4	149841013	149841213	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66846.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-3179104-3	chr11	3179005	3179205	+	966.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030207, intron 5 of 32)	intron (NM_030207, intron 5 of 32)	14358.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91444670-4	chr2	91444571	91444771	+	971.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311144)	promoter-TSS (NM_001311144)	43.0	NM_001311144	228356.0	Mm.386861	NM_175123	ENSMUSG00000040591	1110051M20Rik	AI586322	RIKEN cDNA 1110051M20 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-100528623-3	chr9	100528505	100528705	+	573.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010878, intron 1 of 3)	RMER6A|LTR|ERVK	17529.0	NM_010878	17973.0	Mm.181485	NM_010878	ENSMUSG00000032475	Nck1	6330586M15Rik|D230010O13Rik|Nck|Nck-1	non-catalytic region of tyrosine kinase adaptor protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-35507335-4	chr2	35507228	35507428	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-45879.0	NM_001145821	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-124143847-4	chr9	124143775	124143975	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22332.0	NM_009917	12774.0	Mm.14302	NM_009917	ENSMUSG00000079227	Ccr5	AM4-7|CD195|Cmkbr5	chemokine (C-C motif) receptor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132766461-1	chr4	132766361	132766561	+	542.0	f1_c57bl6.idr	Intergenic	Intergenic	-1899.0	NM_011284	19891.0	Mm.2870	NM_011284	ENSMUSG00000028884	Rpa2	AA409079|AI325195|AU020965|RPA34|Rf-A2	replication protein A2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-77028742-2	chr16	77028642	77028842	+	603.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013918, intron 1 of 23)	intron (NM_013918, intron 1 of 23)	14673.0	NM_013918	30940.0	Mm.40986	NM_013918	ENSMUSG00000022867	Usp25	-	ubiquitin specific peptidase 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118689206-2	chr9	118689106	118689306	+	853.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 13 of 27)	intron (NM_133721, intron 13 of 27)	-22486.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53203818-4	chr4	53203708	53203908	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42388.0	NR_040665	78180.0	Mm.243847	NR_040665	ENSMUSG00000086947	4930522O17Rik	-	RIKEN cDNA 4930522O17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-106356671-4	chr9	106356567	106356767	+	977.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-11965.0	NM_153459	235584.0	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	5.33909636542527	4.78019030929393	4.45448058764409	4.93747944752988	3.13160584095408	2.20733405088021	3.19736941060826	3.59861366023093	-2.40287683024229	5.60905332166538e-07	4.03784530520047e-05
Merged-chr8-126871780-2	chr8	126871680	126871880	+	579.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22760.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-41283839-4	chr8	41283744	41283944	+	773.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023662, intron 16 of 37)	intron (NM_023662, intron 16 of 37)	44085.0	NM_023662	18536.0	Mm.117896	NM_023662	ENSMUSG00000031592	Pcm1	2600002H09Rik|9430077F19Rik|C030044G17Rik	pericentriolar material 1	protein-coding	-2.18243820993087	-2.15538464093652	-2.16356586349869	-2.17028616330028	-2.18053909940952	-2.15361173587851	-2.16171381403791	-2.0403552525549	0.759018020146679	0.829933115115583	1
Merged-chr15-95789175-2	chr15	95789075	95789275	+	792.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1668.0	NM_175344	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6308633-2	chr19	6308533	6308733	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033342, intron 1 of 36)	intron (NM_001033342, intron 1 of 36)	2176.0	NM_001033342	240505.0	Mm.329622	NM_001033342	ENSMUSG00000024769	Cdc42bpg	BC046418|MRCKgamma	CDC42 binding protein kinase gamma (DMPK-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-100450844-3	chr9	100450635	100450835	+	890.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35738.0	NM_001033543	213208.0	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-23172486-4	chr2	23172380	23172580	+	862.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013771, intron 5 of 18)	ID_B1|SINE|B4	15975.0	NM_013771	27377.0	Mm.23335	NM_013771	ENSMUSG00000026775	Yme1l1	FtsH1|Ftsh	YME1-like 1 (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83317196-4	chr6	83317101	83317301	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008638, intron 1 of 7)	intron (NM_008638, intron 1 of 7)	403.0	NM_008638	17768.0	Mm.443	NM_008638	ENSMUSG00000005667	Mthfd2	AW558851|NMDMC	methylenetetrahydrofolate dehydrogenase (NAD+ dependent), methenyltetrahydrofolate cyclohydrolase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-82840567-4	chr18	82840498	82840698	+	929.974976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15299.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-30718313-4	chr10	30718225	30718425	+	902.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358842, intron 3 of 14)	intron (NM_001358842, intron 3 of 14)	-62458.0	NM_001111267	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-150375337-3	chr5	150375246	150375446	+	715.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172887, intron 14 of 60)	intron (NM_172887, intron 14 of 60)	115416.0	NM_172887	320365.0	Mm.216590	NM_172887	ENSMUSG00000056602	Fry	13CDNA73|9330186A19Rik|AF346502|AI462658|C87180|D930046M03|cg003|mKIAA4143	FRY microtubule binding protein	protein-coding	2.71148414748673	2.2852177705288	3.31356835232668	2.43596236006918	3.15095005132504	2.61120390448309	2.22694369702978	2.56918222744543	-0.121980512387925	0.870611806091616	0.998431161219273
Merged-chr4-102499112-4	chr4	102499012	102499212	+	891.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177983, intron 4 of 5)	intron (NM_001177983, intron 4 of 5)	-70948.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	0.362091251335261	0.407574185690745	0.832811567086198	0.610027109083216	0.890917078283791	0.675151033187382	0.396356605589143	2.04968710986657	2.675114914462	0.100907004217443	0.494458880374175
Merged-chr7-89269889-4	chr7	89269781	89269981	+	947.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360746, intron 4 of 14)	intron (NM_001360746, intron 4 of 14)	68906.0	NM_028343	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45429191-2	chr7	45429091	45429291	+	549.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011304, intron 4 of 14)	intron (NM_011304, intron 4 of 14)	5273.0	NM_011304	20174.0	Mm.34410	NM_011304	ENSMUSG00000003868	Ruvbl2	mp47|p47	RuvB-like protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-96382977-2	chr9	96382847	96383047	+	645.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18516.0	NM_001357212	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	0.306977367407415	0.0353484628433194	0.93483441010561	0.0233968416640402	0.0159655055997334	0.0368588608422026	0.653760497330567	0.0243114073993012	-1.06131835843711	0.625531756152832	1
Merged-chr11-53859924-2	chr11	53859824	53860024	+	774.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033332)	promoter-TSS (NR_033332)	-668.0	NR_033332	622459.0	Mm.479656	NR_033332	ENSMUSG00000081769	Gm12216	602-19-115	predicted gene 12216	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-96950138-2	chr7	96950038	96950238	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1389.0	NM_153591	244141.0	Mm.274864	NM_153591	ENSMUSG00000018995	Nars2	AI875199	asparaginyl-tRNA synthetase 2 (mitochondrial)(putative)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-52182223-4	chr16	52182118	52182318	+	956.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033238, intron 13 of 17)	intron (NM_001033238, intron 13 of 17)	150669.0	NM_001033238	208650.0	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-20347753-4	chr10	20347653	20347853	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027930)	promoter-TSS (NM_027930)	-66.0	NM_027930	71804.0	Mm.262151	NM_027930	ENSMUSG00000019992	Mtfr2	2610016C23Rik|4933412C16Rik|Dufd1|Fam54a	mitochondrial fission regulator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-101905912-4	chr2	101905825	101906025	+	649.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19663.0	NM_029635	76501.0	Mm.330424	NM_029635	ENSMUSG00000027163	Commd9	1810029F08Rik|AA409293	COMM domain containing 9	protein-coding	0.648426622832729	0.308396413407572	0.302351555458325	0.807717789454839	0.837549917608002	0.309760991306066	0.620998246703742	0.457085761370932	0.219469472390923	0.903486970695357	1
Merged-chr7-101411345-2	chr7	101411242	101411442	+	588.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_027180, exon 30 of 30)	3' UTR (NM_027180, exon 30 of 30)	-10349.0	NM_001008548	207728.0	Mm.247564	NM_001008548	ENSMUSG00000030653	Pde2a	CGS-PDE|cGSPDE	phosphodiesterase 2A, cGMP-stimulated	protein-coding	1.51383111997396	0.668964211868962	0.654151788050667	1.78549756357092	0.977775021103987	0.672255248179889	0.65744944646809	1.717443021942	-0.585524801016795	0.712116281845915	0.998431161219273
Merged-chr5-99250023-4	chr5	99249934	99250134	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181318, intron 1 of 13)	intron (NM_181318, intron 1 of 13)	2893.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106976068-1	chr11	106975968	106976168	+	644.0	f1_c57bl6.idr	Intergenic	Intergenic	23457.0	NM_010655	16647.0	Mm.12508	NM_010655	ENSMUSG00000018362	Kpna2	2410044B12Rik|IPOA1|PTAC58|Rch1	karyopherin (importin) alpha 2	protein-coding	-0.734697168562934	-1.28094420828655	-1.29131886204401	-1.29984091153697	-1.31008363841169	-1.2786959775384	-1.28897026783925	-1.29831546875223	-2.42902550944018	0.482518537989684	1
Merged-chr7-131800816-3	chr7	131800650	131800850	+	607.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-165710.0	NM_173410	233919.0	Mm.208740	NM_173410	ENSMUSG00000040125	Gpr26	9630036A11Rik|A730021D22	G protein-coupled receptor 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-25461962-4	chr14	25461875	25462075	+	958.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	2790.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-118116222-4	chr7	118116117	118116317	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_170669)	promoter-TSS (NM_170669)	-70.0	NM_170669	267019.0	Mm.288212	NM_170669	ENSMUSG00000008683	Rps15a	A630031B11Rik	ribosomal protein S15A	protein-coding	5.93766041382717	5.52519862352876	4.9382749063459	5.40638011754238	5.25833335627178	4.94885943047089	5.05513769159784	5.78189630439427	-0.227227763547757	0.476250854130493	0.927406040011522
Merged-chr10-81101896-1	chr10	81101796	81101996	+	540.0	f1_balb.idr	Intergenic	Intergenic	-2720.0	NR_049187	100885826.0		NR_049187	ENSMUSG00000093498	Mir5615-2	Gm23367|mir-5615-2|mmu-mir-5615-2	microRNA 5615-2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-21115933-4	chr19	21115849	21116049	+	971.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11239.0	NR_126458	75354.0	Mm.243873	NR_126458		4930554I06Rik	-	RIKEN cDNA 4930554I06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-144572058-2	chr3	144571958	144572158	+	847.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_053102, intron 1 of 4)	intron (NM_053102, intron 1 of 4)	1631.0	NM_053102	93684.0	Mm.29812	NM_053102	ENSMUSG00000037072	Selenof	9430015P09Rik|Sep15	selenoprotein F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-23988766-4	chr16	23988665	23988865	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009744)	promoter-TSS (NM_009744)	87.0	NM_009744	12053.0	Mm.347398	NM_009744	ENSMUSG00000022508	Bcl6	Bcl5	B cell leukemia/lymphoma 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-44591950-2	chr19	44591851	44592051	+	671.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29097.0	NM_176958	319594.0	Mm.145278	NM_176958	ENSMUSG00000036450	Hif1an	2310046M24Rik|A830014H24Rik|FIH|FIH1	hypoxia-inducible factor 1, alpha subunit inhibitor	protein-coding	-0.520821539515656	-0.871583049742127	-0.877923506059039	-0.88003680827373	-0.416899165617375	-0.868958809369053	-0.877318134074192	-0.879668109448034	0.445988717269444	0.886418580920667	1
Merged-chr10-14043539-1	chr10	14043439	14043639	+	640.0	f1_c57bl6.idr	intron (NM_001358783, intron 2 of 12)	(TG)n|Simple_repeat|Simple_repeat	77160.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	0.744856174833692	0.48207287151671	0.473023727901198	1.39529234807745	0.752394985970482	0.870032367800171	0.475026177427049	1.04630893864077	-0.221416506342819	0.893654892761143	1
Merged-chr6-128644181-1	chr6	128644081	128644281	+	571.0	f0_balb.idr	Intergenic	Intergenic	-18204.0	NM_053165	94071.0	Mm.197689	NM_053165	ENSMUSG00000030364	Clec2h	Clrf|clr-f	C-type lectin domain family 2, member h	protein-coding	2.15720314918134	1.5063641735324	1.66749531205854	1.42479192234464	2.26610996293316	2.95577803309682	1.68018548202019	2.18777715808919	1.57942220041108	0.104460283774643	0.504013867853149
Merged-chr3-122270171-2	chr3	122270071	122270271	+	718.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	-4243.0	NM_153806	99480.0	Mm.398647	NM_153806	ENSMUSG00000039756	Dnttip2	4930588M11Rik|AA408582|AU014960|HSU15552	deoxynucleotidyltransferase, terminal, interacting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-122234707-2	chr14	122234607	122234807	+	883.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029556, intron 1 of 7)	intron (NM_029556, intron 1 of 7)	-1069.0	NR_015532	68245.0	Mm.443285	NR_015532	ENSMUSG00000100585	1700108J01Rik	-	RIKEN cDNA 1700108J01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122869881-2	chr8	122869781	122869981	+	630.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21507.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-73695891-2	chr12	73695791	73695991	+	779.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008856, intron 4 of 13)	L3|LINE|CR1	111095.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-158159475-1	chr2	158159375	158159575	+	558.0	f1_c57bl6.idr	Intergenic	L2|LINE|L2	-13083.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69037891-3	chr11	69037787	69037987	+	838.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	tRNA-Thr-ACY|tRNA|tRNA	-7750.0	NM_011496	20877.0	Mm.3488	NM_011496	ENSMUSG00000020897	Aurkb	AIM-1|AIRK2|AL022959|Aik2|Aim1|Ark2|AurB|IPL1|STK-1|Stk12|Stk5	aurora kinase B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-103024132-2	chr3	103024032	103024232	+	652.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310693, intron 1 of 17)	RLTR17B_Mm|LTR|ERVK	3586.0	NM_144901	229663.0	Mm.277713	NM_144901	ENSMUSG00000068823	Csde1	AA960392|BC016898|D3Jfr1|mKIAA0885|unr	cold shock domain containing E1, RNA binding	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-11350170-4	chr19	11349987	11350187	+	869.951782	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1VL4|LINE|L1	-13941.0	NM_027836	109225.0	Mm.491251	NM_027836	ENSMUSG00000024672	Ms4a7	9130422I10Rik|A430103C15Rik|CD20l4|CFFMA	membrane-spanning 4-domains, subfamily A, member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56276921-4	chr17	56276811	56277011	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_174989)	promoter-TSS (NM_174989)	-144.0	NM_174989	106759.0	Mm.203952	NM_174989	ENSMUSG00000047123	Ticam1	AW046014|AW547018|TICAM-1|TRIF	toll-like receptor adaptor molecule 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-83565481-2	chr9	83565378	83565578	+	739.666626	f0_balb.idr|f1_balb.idr	intron (NM_172507, intron 1 of 3)	intron (NM_172507, intron 1 of 3)	17140.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	1.85280630384268	1.33556023602044	2.75324961784971	1.53287942916225	3.1579733860333	2.49273745974395	4.12093670673676	2.16106389529561	2.26781847760552	0.0105785653624493	0.113322881445238
Merged-chr17-45251408-2	chr17	45251309	45251509	+	857.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	182298.0	NM_152810	71702.0	Mm.28270	NM_152810	ENSMUSG00000023932	Cdc5l	1200002I02Rik|AA408004|PCDC5RP	cell division cycle 5-like (S. pombe)	protein-coding	-0.270473361320337	-0.254494877293774	-0.259707834418632	0.575858729701639	0.334766236424392	-0.253322624948879	-0.258556299249614	-0.263038063048258	-0.676198526021959	0.791597786673875	1
Merged-chr12-4212055-2	chr12	4211955	4212155	+	621.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159537, intron 20 of 21)	intron (NM_001159537, intron 20 of 21)	21910.0	NM_134046	52504.0	Mm.70546	NM_134046	ENSMUSG00000020652	Cenpo	2810429O05Rik|8430427C03Rik|D12Ertd482e	centromere protein O	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116142795-4	chr11	116142710	116142910	+	832.950012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172571, exon 31 of 31)	3' UTR (NM_172571, exon 31 of 31)	-3942.0	NM_024177	60441.0	Mm.29974	NM_024177	ENSMUSG00000020775	Mrpl38	1110036N21Rik|4733401F03Rik|MRP-L3|R75240|Rpml3	mitochondrial ribosomal protein L38	protein-coding	-0.245876010916974	0.336158248081853	-0.232444907889573	-0.23745764523726	-0.244615858450776	-0.224569104868717	-0.231019705007907	0.830609589120081	1.33879523729837	0.586242406327946	1
Merged-chr4-130802230-4	chr4	130802123	130802323	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011520, intron 1 of 4)	intron (NM_011520, intron 1 of 4)	9686.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-79139831-3	chr8	79139729	79139929	+	859.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001294279, intron 8 of 14)	intron (NM_001294279, intron 8 of 14)	108754.0	NM_026315	67687.0	Mm.178707	NM_026315	ENSMUSG00000031682	1700011L22Rik	-	RIKEN cDNA 1700011L22 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-146897146-4	chr5	146897053	146897253	+	961.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51504.0	NM_025652	66596.0	Mm.196528	NM_025652	ENSMUSG00000016503	Gtf3a	2010015D03Rik|2610111I01Rik|5330403M05Rik	general transcription factor III A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-43375142-2	chr1	43375042	43375242	+	706.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MEf|LINE|L1	-70609.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-11557597-2	chr8	11557497	11557697	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302459)	promoter-TSS (NM_001302459)	-813.0	NM_001302459	26356.0	Mm.25709	NM_011919	ENSMUSG00000045969	Ing1	2610028J21Rik|AA407184|AI875420|mING1h|p33Ing1|p37Ing1b	inhibitor of growth family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-41199089-1	chr8	41198989	41199189	+	686.0	f0_balb.idr	intron (NM_145594, intron 5 of 7)	intron (NM_145594, intron 5 of 7)	16067.0	NM_145594	234199.0	Mm.277955	NM_145594	ENSMUSG00000031594	Fgl1	Mfire1	fibrinogen-like protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-59212706-2	chr6	59212606	59212806	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001081145)	TTS (NM_001081145)	3836.0	NM_001081145	68140.0	Mm.25843	NM_001081145	ENSMUSG00000049232	Tigd2	3632410O17Rik	tigger transposable element derived 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-85961113-4	chr1	85960996	85961196	+	971.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033290)	promoter-TSS (NM_001033290)	-41.0	NM_001033290	227326.0	Mm.244158	NM_001033290	ENSMUSG00000049608	Gpr55	CTFL|Gm218|Lpir1	G protein-coupled receptor 55	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25757341-2	chr7	25757241	25757441	+	808.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001190974, exon 19 of 19)	3' UTR (NM_001190974, exon 19 of 19)	-2582.0	NM_178089	232989.0	Mm.254223	NM_144922	ENSMUSG00000040725	Hnrnpul1	E130317O14Rik|E1B-AP5|E1BAP5|Hnrnpul|Hnrpul1	heterogeneous nuclear ribonucleoprotein U-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-86685091-2	chr11	86684991	86685191	+	707.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001098810, intron 1 of 1)	intron (NM_001098810, intron 1 of 1)	1010.0	NM_001098810	217057.0	Mm.24868	NM_175004	ENSMUSG00000072582	Ptrh2	A230072I16Rik|Bit1|CGI-147	peptidyl-tRNA hydrolase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-45296316-2	chr9	45296216	45296416	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-22784.0	NM_001013373	214531.0	Mm.394987	NM_001013373	ENSMUSG00000037129	Tmprss13	BC010843|Tpmrss13	transmembrane protease, serine 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-161412303-3	chr1	161412214	161412414	+	705.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009452, intron 1 of 2)	intron (NM_009452, intron 1 of 2)	16876.0	NM_009452	22164.0	Mm.4994	NM_009452	ENSMUSG00000026700	Tnfsf4	Ath-1|Ath1|CD134L|OX-40L|Ox40l|TXGP1|Tnlg2b|Txgp1l|gp34	tumor necrosis factor (ligand) superfamily, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83034061-4	chr6	83033951	83034151	+	961.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291799)	promoter-TSS (NM_001291799)	-173.0	NM_013586	16950.0	Mm.380433	NM_013586	ENSMUSG00000000693	Loxl3	Lor2|Loxl2	lysyl oxidase-like 3	protein-coding	0.0354657773465987	0.243305260069182	0.369062730745528	0.0424871734557997	0.823943169788073	0.0534363701657343	0.226534036730807	0.207973570508645	1.44740947334415	0.467102423313392	1
Merged-chr9-118871295-2	chr9	118871186	118871386	+	886.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 10 of 13)	intron (NM_001113514, intron 10 of 13)	-55250.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	3.57712471422689	4.33038227194859	1.67344634644724	4.17777589306466	3.41252586919122	3.27948603940713	2.43659177199892	4.00879655877802	-0.518354797732078	0.464708397190339	0.922521920152562
Merged-chr7-126482611-4	chr7	126482529	126482729	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4726.0	NM_172745	233870.0	Mm.197829	NM_172745	ENSMUSG00000073838	Tufm	2300002G02Rik|C76308|C76389|EF-TuMT|EFTU	Tu translation elongation factor, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-102046874-4	chr5	102046775	102046975	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 1 of 66)	intron (NM_172882, intron 1 of 66)	23046.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-101993196-2	chr5	101993097	101993297	+	750.733337	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 3 of 66)	intron (NM_172882, intron 3 of 66)	76724.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0.529061965681482	1.17898231730576	0.583271890776967	0.849662519200358	0.369414206640083	1.19242183245161	0.388471679101854	0.380677592444427	-0.8443599560355	0.624663806755101	1
Merged-chr3-97927535-2	chr3	97927435	97927635	+	916.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2638.0	NM_001033779	433632.0	Mm.212421	NM_001033779		Gm5544	EG433632	predicted gene 5544	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-100225064-2	chr15	100224964	100225164	+	568.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2795.0	NM_007497	11908.0	Mm.676	NM_007497	ENSMUSG00000023027	Atf1	-	activating transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-131912459-2	chr4	131912359	131912559	+	669.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_102394)	TTS (NR_102394)	7570.0	NR_102394	545681.0	Mm.2478	NR_102393	ENSMUSG00000085667	Gm12992	-	predicted gene 12992	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-100543061-4	chr15	100542948	100543148	+	801.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355497, intron 2 of 15)	IAPEY3-int|LTR|ERVK	8960.0	NM_033476	21422.0	Mm.219040	NM_033476	ENSMUSG00000009733	Tfcp2	CP-2|CP2|D230015P20Rik|LBP-1c|LBP-1d|LBP1|LSF|Tcfcp2|UBP-1	transcription factor CP2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-107939607-4	chr3	107939484	107939684	+	902.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008184, intron 7 of 7)	intron (NM_008184, intron 7 of 7)	4165.0	NM_008184	14867.0	Mm.458154	NM_008184	ENSMUSG00000068762	Gstm6	-	glutathione S-transferase, mu 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-86555248-4	chr4	86555141	86555341	+	858.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081096, intron 1 of 3)	intron (NM_001081096, intron 1 of 3)	3062.0	NM_001081096	75811.0	Mm.56451	NM_001081096	ENSMUSG00000028492	Saxo1	4930500O09Rik|Fam154a	stabilizer of axonemal microtubules 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83045756-4	chr11	83045652	83045852	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5219.0	NR_073524	237887.0	Mm.341645	NM_181542	ENSMUSG00000072621	Slfn10-ps	Slfn10|mFLJ00257	schlafen 10, pseudogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-176064374-2	chr1	176064274	176064474	+	701.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357846, intron 3 of 8)	(TG)n|Simple_repeat|Simple_repeat	144045.0	NM_001290692	226720.0	Mm.11282	NM_001290692	ENSMUSG00000104158	Becn2	Beclin-2|Gm104	beclin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-66448361-2	chr17	66448261	66448461	+	602.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001114098, exon 1 of 15)	exon (NM_001114098, exon 1 of 15)	1389.0	NM_172963	68617.0	Mm.33421	NM_172963	ENSMUSG00000052105	Mtcl1	1110012J17Rik|Ccdc165|D130071O13|Kiaa0802|Soga2|mKIAA0802|t8219b25	microtubule crosslinking factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-102248807-4	chr11	102248705	102248905	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153544)	promoter-TSS (NM_153544)	-77.0	NM_153544	217216.0	Mm.247335	NM_153544	ENSMUSG00000034773	BC030867	-	cDNA sequence BC030867	protein-coding	3.70663473855569	2.65123652569319	1.66907915325465	3.48898272352253	3.5262116499247	3.31349499061346	3.74638965864635	3.28037771520256	0.580205470337065	0.397218013596171	0.88365050564775
Merged-chr15-93340844-4	chr15	93340731	93340931	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3896.0	NM_024189	67057.0	Mm.4714	NM_024189	ENSMUSG00000022634	Yaf2	2810021M11Rik	YY1 associated factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-103023183-2	chr3	103023064	103023264	+	728.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310693, intron 1 of 17)	intron (NM_001310693, intron 1 of 17)	2618.0	NM_144901	229663.0	Mm.277713	NM_144901	ENSMUSG00000068823	Csde1	AA960392|BC016898|D3Jfr1|mKIAA0885|unr	cold shock domain containing E1, RNA binding	protein-coding	0.334309013014092	-0.0578084500495581	-0.0641928604614067	-0.0691494575509426	0.223674184252643	-0.0563753522390061	0.942649570731387	-0.0682815642043146	2.03380944023161	0.361988480980457	1
Merged-chr10-14208441-1	chr10	14208341	14208541	+	719.0	f1_c57bl6.idr	Intergenic	Intergenic	242062.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	0.80755897834077	0.418675993867748	0.90840440370143	0.402478875317248	0.392359171961213	0.420716609563381	1.34175661766299	0.995060106344013	1.03198625777898	0.56436119840142	1
Merged-chr18-12226110-2	chr18	12226010	12226210	+	577.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008720, intron 1 of 24)	intron (NM_008720, intron 1 of 24)	10276.0	NM_008720	18145.0	Mm.3484	NM_008720	ENSMUSG00000024413	Npc1	A430089E03Rik|C85354|D18Ertd139e|D18Ertd723e|lcsd|nmf164|spm	NPC intracellular cholesterol transporter 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-86574635-2	chr11	86574535	86574735	+	666.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	9523.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-124083046-1	chr10	124082946	124083146	+	570.0	f1_c57bl6.idr	Intergenic	Lx2B|LINE|L1	-386028.0	NR_028310	75030.0	Mm.159403	NR_028310	ENSMUSG00000112364	4930503E24Rik	-	eukaryotic translation initiation factor 3, subunit I pseudogene	pseudo	0.629627304706936	0.280937860281673	0.274666836848823	0.686633787941963	0.822604991506437	0.282352176712893	0.842345132849686	0.27067637146591	0.666950044452547	0.729454997332393	1
Merged-chr2-98665145-4	chr2	98665052	98665252	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	SYNREP_MM|Satellite|Satellite	1197495.0	NM_178725	241568.0	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-69128406-2	chr2	69128306	69128506	+	562.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-7394.0	NM_181547	329416.0	Mm.90047	NM_181547	ENSMUSG00000034738	Nostrin	Daip2|mDaIP2	nitric oxide synthase trafficker	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33956358-3	chr16	33956255	33956455	+	890.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009471, exon 6 of 6)	3' UTR (NM_009471, exon 6 of 6)	10683.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-8767482-2	chr10	8767382	8767582	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 8 of 19)	intron (NM_175155, intron 8 of 19)	118588.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-114045868-2	chr6	114045768	114045968	+	575.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR17B_Mm|LTR|ERVK	-3788.0	NM_009723	11941.0	Mm.321755	NM_009723	ENSMUSG00000030302	Atp2b2	D6Abb2e|Gena300|PMCA2|Tmy|dfw|jog|wms|wri	ATPase, Ca++ transporting, plasma membrane 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-69681172-8	chr12	69681110	69681310	+	931.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001135559, intron 1 of 22)	intron (NM_001135559, intron 1 of 22)	642.0	NM_001135559	20663.0	Mm.3770	NM_001135559	ENSMUSG00000034801	Sos2	SOS-2|mSOS-2	SOS Ras/Rho guanine nucleotide exchange factor 2	protein-coding	1.39766074574664	2.88044259537302	1.53616526383197	2.23417605743412	2.12294540876181	3.45113374707121	3.45223478449444	1.20760821845471	1.33731957135096	0.171728083319234	0.639432302306149
Merged-chr5-30907816-4	chr5	30907692	30907892	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024460)	promoter-TSS (NM_024460)	-4.0	NM_024460	67695.0	Mm.21450	NM_024460	ENSMUSG00000038803	Ost4	2310016E02Rik	oligosaccharyltransferase complex subunit 4 (non-catalytic)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-74062247-4	chr13	74062131	74062331	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028959)	promoter-TSS (NM_028959)	54.0	NM_028959	74470.0	Mm.73234	NM_028959	ENSMUSG00000021572	Cep72	2610029E11Rik|4933440J22Rik	centrosomal protein 72	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35089278-4	chr17	35089179	35089379	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178592)	promoter-TSS (NM_178592)	-12.0	NM_178592	193742.0	Mm.43745	NM_178592	ENSMUSG00000007036	Abhd16a	AI326074|Bat-5|Bat5|D17H6S82E|NG26	abhydrolase domain containing 16A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43005907-4	chr4	43005794	43005994	+	986.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053081, intron 8 of 13)	intron (NM_053081, intron 8 of 13)	4407.0	NM_001163233	60534.0	Mm.23122	NM_053081	ENSMUSG00000028453	Fancg	AU041407|Xrcc9	Fanconi anemia, complementation group G	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-45855771-1	chr17	45855671	45855871	+	861.0	f0_balb.idr	Intergenic	MLT1H1|LTR|ERVL-MaLR	25681.0	NR_152136	75154.0	Mm.399341	NR_152136		4930542M03Rik	-	RIKEN cDNA 4930542M03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-87334180-4	chr3	87334041	87334241	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23740.0	NM_009690	11801.0	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	2.42496577655525	2.72917700461402	2.76517457548624	3.51085424106958	3.52787678043591	3.39400837213189	2.90472374563577	2.43152905873638	0.365003340421895	0.59348429384046	0.9706660979479
Merged-chr4-120951741-4	chr4	120951629	120951829	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001005788)	promoter-TSS (NM_001005788)	-28.0	NM_001005788	381549.0	Mm.331840	NM_001005788	ENSMUSG00000064141	Zfp69	Gm1029|Krab2|Zfp63	zinc finger protein 69	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91603804-2	chr16	91603704	91603904	+	637.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-6124.0	NM_030018	77975.0	Mm.290341	NM_030018	ENSMUSG00000022964	Tmem50b	AU015466|AU019872|B230114J08Rik	transmembrane protein 50B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-31077675-4	chr17	31077562	31077762	+	991.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009593, intron 2 of 14)	intron (NM_009593, intron 2 of 14)	19968.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-13871237-3	chr10	13871131	13871331	+	927.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_152745)	promoter-TSS (NR_152745)	-49.0	NR_152745	102634635.0		NR_152745	ENSMUSG00000112172	Gm32172	-	predicted gene, 32172	ncRNA	-0.0709310974338763	-0.190987078766231	0.337677153499979	-0.198156104711381	-0.0671364661048203	0.147620930893406	-0.194149201675676	-0.0428355130639566	-0.254564742808283	0.905316305348694	1
Merged-chr1-88212816-2	chr1	88212716	88212916	+	996.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_201645, exon 1 of 5)	exon (NM_201645, exon 1 of 5)	857.0	NM_201645	394436.0	Mm.300095	NM_201645	ENSMUSG00000089960	Ugt1a1	Gnt1|UDPGT 1-1|UGT1A01|Udpgt-1a|UgtBr1	UDP glucuronosyltransferase 1 family, polypeptide A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-102973736-2	chr14	102973636	102973836	+	910.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8896.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-132155594-2	chr3	132155494	132155694	+	704.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_020265, intron 1 of 3)	intron (NM_020265, intron 1 of 3)	70302.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-121984812-2	chr9	121984712	121984912	+	786.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289559, intron 1 of 2)	intron (NM_001289559, intron 1 of 2)	11214.0	NM_001289559	215494.0	Mm.402151	NM_153540	ENSMUSG00000066235	Pomgnt2	Ago61|C85492|Gtdc2	protein O-linked mannose beta 1,4-N-acetylglucosaminyltransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-89365567-2	chr6	89365467	89365667	+	616.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2954.0	NM_008881	18844.0	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-159881946-2	chr2	159881846	159882046	+	667.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65395.0	NR_040498	71081.0	Mm.383491	NR_040498	ENSMUSG00000085198	4933416E03Rik	-	RIKEN cDNA 4933416E03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-60743844-2	chr18	60743744	60743944	+	885.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001348146, intron 1 of 6)	intron (NM_001348146, intron 1 of 6)	2902.0	NM_001348101	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	0.475881037501003	-0.184283605232835	-0.189749973892142	-0.193983191482652	0.639011595633087	-0.183054502032105	-0.188542372639026	-0.193242645166095	0.448162458874129	0.858290109560663	1
Merged-chr5-21331719-3	chr5	21331569	21331769	+	939.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029195, intron 3 of 18)	intron (NM_029195, intron 3 of 18)	-41004.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-25331786-2	chr2	25331686	25331886	+	692.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001029983)	promoter-TSS (NM_001029983)	785.0	NR_027448	100272219.0	Mm.382103	NR_027448	ENSMUSG00000097345	AA543186	-	expressed sequence AA543186	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140105944-4	chr5	140105854	140106054	+	980.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359025, intron 14 of 17)	intron (NM_001359025, intron 14 of 17)	68964.0	NM_001359027	17120.0	Mm.27250	NM_010752	ENSMUSG00000029554	Mad1l1	AI173502|AW550425|Mad1	MAD1 mitotic arrest deficient 1-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-58818204-4	chr15	58818115	58818315	+	854.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175212, intron 1 of 6)	MLT1D|LTR|ERVL-MaLR	5212.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-65677031-2	chr18	65676882	65677082	+	662.200012	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361052, intron 6 of 8)	intron (NM_001361052, intron 6 of 8)	-21286.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-43079826-2	chr17	43079726	43079926	+	610.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178589, intron 4 of 5)	intron (NM_178589, intron 4 of 5)	63271.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-9250725-4	chr3	9250642	9250842	+	857.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_177660, exon 1 of 6)	5' UTR (NM_177660, exon 1 of 6)	175.0	NM_177660	229055.0	Mm.103262	NM_177660	ENSMUSG00000069114	Zbtb10	4832414A18|AU021107|RINZF	zinc finger and BTB domain containing 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-50394135-4	chr17	50394052	50394252	+	895.741699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-100532.0	NM_001277863	13164.0	Mm.280641	NM_010021	ENSMUSG00000010592	Dazl	Daz-like|Dazh|Dazl1|Dazla|Tpx-2|Tpx2	deleted in azoospermia-like	protein-coding	1.05548191716818	2.0729532197358	1.55484406782793	1.51246230247416	1.27326856622137	2.089350683747	2.4186469959262	2.33920589725188	1.39590923349173	0.200089198886171	0.683821745604712
Merged-chr4-97773798-2	chr4	97773698	97773898	+	894.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001122952, intron 1 of 10)	intron (NM_001122952, intron 1 of 10)	-3828.0	NM_001122953	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-26438338-3	chr14	26438269	26438469	+	689.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310445, intron 16 of 22)	intron (NM_001310445, intron 16 of 22)	80822.0	NR_038005	71106.0	Mm.158564	NR_038005	ENSMUSG00000021874	4933413J09Rik	GCSE	RIKEN cDNA 4933413J09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-29601569-4	chr17	29601465	29601665	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198647, intron 12 of 12)	intron (NM_198647, intron 12 of 12)	-5260.0	NR_045447	74092.0	Mm.396264	NR_045447	ENSMUSG00000089900	Tbc1d22bos	0610038L08Rik	TBC1 domain family, member 22B, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-29355050-4	chr19	29354930	29355130	+	924.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026362, intron 3 of 5)	intron (NM_026362, intron 3 of 5)	6841.0	NM_026362	67759.0	Mm.275511	NM_026362	ENSMUSG00000016495	Plgrkt	1110007H22Rik|5033414D02Rik|AI852040|Plg-R(KT)|Plg-RKT	plasminogen receptor, C-terminal lysine transmembrane protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55581864-2	chr14	55581764	55581964	+	721.833374	f1_balb.idr|f1_c57bl6.idr	TTS (NM_011189)	TTS (NM_011189)	3370.0	NM_011189	19186.0	Mm.830	NM_011189	ENSMUSG00000022216	Psme1	AW413925|PA28a	proteasome (prosome, macropain) activator subunit 1 (PA28 alpha)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-36836297-4	chr17	36836283	36836483	+	932.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286727)	promoter-TSS (NM_001286727)	-763.0	NM_001025599	22670.0	Mm.34587	NM_030698	ENSMUSG00000024457	Trim26	AI462198|Zfp173|Zfp1736	tripartite motif-containing 26	protein-coding	2.0271477634029	2.87652796066943	0.992407222810537	0.686147560910149	1.2816297833439	0.740086264237301	1.23424315702717	0.689968074582393	-2.6681687588593	0.0490295927966265	0.322423355127976
Merged-chr4-45185151-2	chr4	45185051	45185251	+	552.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081172, intron 1 of 15)	CpG	245.0	NM_001081172	666060.0	Mm.24783	NM_001081172	ENSMUSG00000035615	Frmpd1	BC031840|mKIAA0967	FERM and PDZ domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-70672145-2	chr9	70672045	70672245	+	690.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6837.0	NM_007399	11487.0	Mm.3037	NM_007399	ENSMUSG00000054693	Adam10	1700031C13Rik|MADM|kuz|kuzbanian	a disintegrin and metallopeptidase domain 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-17002056-2	chr11	17001976	17002176	+	712.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_019549, intron 1 of 9)	L1_Mus1|LINE|L1	6642.0	NM_019549	56193.0	Mm.98232	NM_019549	ENSMUSG00000020120	Plek	2010300B13Rik	pleckstrin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-44750875-3	chr19	44750772	44750972	+	782.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6522.0	NM_011037	18504.0	Mm.192158	NM_011037	ENSMUSG00000004231	Pax2	Opdc|Pax-2	paired box 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-104027767-4	chr2	104027673	104027873	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020593)	promoter-TSS (NM_020593)	-26.0	NM_020593	57443.0	Mm.143768	NM_020593	ENSMUSG00000027180	Fbxo3	1200002G09Rik|1700026K02Rik|AI046358|Fba	F-box protein 3	protein-coding	-1.03471341738396	-1.01676691751535	-0.858910840311029	-0.621743377660118	-0.894040329857456	-1.01435616864446	-1.0253731577869	-1.03129354230352	-1.6727152367587	0.575359217581943	1
Merged-chr9-123058891-4	chr9	123058777	123058977	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177911, intron 10 of 13)	L1M4|LINE|L1	24136.0	NM_177911	331046.0	Mm.195309	NM_177911	ENSMUSG00000025787	Tgm4	9530008N10Rik|Eapa1|TGP	transglutaminase 4 (prostate)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-38553563-2	chr6	38553463	38553663	+	732.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001170848, intron 1 of 8)	B1_Mus1|SINE|Alu	-2160.0	NM_001331223	192196.0	Mm.276133	NM_138680	ENSMUSG00000029823	Luc7l2	4930471C18Rik|AA522013|AU015269|CGI59|Cgi74	LUC7-like 2 (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-98086225-4	chr7	98086125	98086325	+	817.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008663, intron 15 of 48)	intron (NM_008663, intron 15 of 48)	23023.0	NM_001256082	17921.0	Mm.1403	NM_008663	ENSMUSG00000030761	Myo7a	Hdb|Myo7|USH1B|nmf371|polka|sh-1|sh1	myosin VIIA	protein-coding	2.14780776816695	2.10588285498804	2.14331782534831	1.58106737410319	1.99318472306766	1.84864976621261	1.2172855602939	1.87126194659368	-0.703168323679852	0.490186686372523	0.934345795476137
Merged-chr2-29817795-3	chr2	29817695	29817895	+	856.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011989)	TTS (NM_011989)	-9594.0	NM_026615	68205.0	Mm.20273	NM_026615	ENSMUSG00000069020	Urm1	2900073H19Rik	ubiquitin related modifier 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-39367169-2	chr1	39367069	39367269	+	782.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252218)	promoter-TSS (NM_001252218)	-682.0	NM_053257	114641.0	Mm.379302	NM_053257	ENSMUSG00000073702	Rpl31	Dts	ribosomal protein L31	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-35371356-7	chr15	35371264	35371464	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177151)	promoter-TSS (NM_177151)	-182.0	NM_177151	666173.0	Mm.309250	NM_177151	ENSMUSG00000037646	Vps13b	1810042B05Rik|2310042E16Rik|4732488H20|C330002D13Rik|C87206|Coh1|D230005K13|mKIAA0532|mKIAA5032	vacuolar protein sorting 13B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-111027770-4	chr8	111027690	111027890	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001190800)	promoter-TSS (NM_001190800)	-20.0	NM_001190800	234733.0	Mm.482176	NM_172284	ENSMUSG00000033658	Ddx19b	2810457M08Rik|4921519L13Rik|AW260119	DEAD (Asp-Glu-Ala-Asp) box polypeptide 19b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-67461012-4	chr18	67460915	67461115	+	991.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3834.0	NM_144867	225655.0	Mm.221420	NM_144867	ENSMUSG00000024530	Prelid3a	A230074A19Rik|BC019561|Slmo1	PRELI domain containing 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-35384375-3	chr12	35384290	35384490	+	715.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	150599.0	NM_013464	11622.0	Mm.341377	NM_013464	ENSMUSG00000019256	Ahr	Ah|Ahh|Ahre|In|bHLHe76	aryl-hydrocarbon receptor	protein-coding	1.50380323445086	1.49142589682615	0.769980125321728	0.907970097119261	0.988445053782557	0.578898117126577	0.567654737261573	0.557929510631776	-2.68187355396927	0.098597239901391	0.488292384839112
Merged-chr4-132604325-2	chr4	132604210	132604410	+	543.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-34736.0	NM_210071	14050.0	Mm.227733	NM_010166	ENSMUSG00000028886	Eya3	AI844637	EYA transcriptional coactivator and phosphatase 3	protein-coding	0.754089278409185	1.96871043125714	0.580694969485014	0.566493008248317	1.09121523936985	1.98783651058903	0.584683962129242	0.807810505210585	0.341511021339591	0.821567958641888	0.998431161219273
Merged-chr7-140922599-2	chr7	140922499	140922699	+	823.666626	f1_balb.idr|f1_c57bl6.idr	exon (NM_133946, exon 4 of 8)	exon (NM_133946, exon 4 of 8)	1697.0	NM_133946	101613.0	Mm.386833	NM_133946	ENSMUSG00000038745	Nlrp6	AI504961|Avr|Nalp6|Navr|Navr/Avr|Non-AVR|Pypaf5	NLR family, pyrin domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-79286803-4	chr3	79286703	79286903	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-58573.0	NM_001142953	100233207.0	Mm.373801	NM_001142953	ENSMUSG00000091685	Gm17359	-	predicted gene, 17359	protein-coding	1.99048392400857	2.24493568741222	2.36292558082991	2.37731173455433	2.00760777284554	1.67658839657975	1.17805129398451	1.15520106542957	-1.92884180404492	0.0693660898241334	0.395432853520725
Merged-chr15-28027770-2	chr15	28027670	28027870	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC3|LINE|L1	-1922.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-27302435-3	chr7	27302354	27302554	+	999.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31194.0	NM_001113549	108075.0	Mm.272251	NM_175641	ENSMUSG00000040488	Ltbp4	2310046A13Rik	latent transforming growth factor beta binding protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-26380540-4	chr2	26380335	26380535	+	942.488098	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290419, intron 1 of 23)	CpG	218.0	NM_172339	227644.0	Mm.207460	NM_172339	ENSMUSG00000036281	Snapc4	5730436L13Rik	small nuclear RNA activating complex, polypeptide 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-113903650-2	chr5	113903550	113903750	+	834.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011779, intron 1 of 10)	intron (NM_011779, intron 1 of 10)	5056.0	NM_011779	23790.0	Mm.260158	NM_011779	ENSMUSG00000004530	Coro1c	AL022675|AW455561|AW548837	coronin, actin binding protein 1C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-16773339-2	chr19	16773239	16773439	+	555.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_173028, intron 1 of 71)	intron (NM_173028, intron 1 of 71)	7594.0	NM_173028	271564.0	Mm.211963	NM_173028	ENSMUSG00000046230	Vps13a	4930425F11|4930516E05Rik|4930543C13Rik|9930023P20|Chac|Chorein|D330038K10Rik|mKIAA0986	vacuolar protein sorting 13A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-84036251-2	chr3	84036151	84036351	+	830.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172681, intron 2 of 34)	intron (NM_172681, intron 2 of 34)	3910.0	NM_172681	229473.0	Mm.28838	NM_172681	ENSMUSG00000033767	Tmem131l	D930015E06Rik|Kiaa0922|mKIAA0922	transmembrane 131 like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-51030364-4	chr9	51030272	51030472	+	983.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-21299.0	NM_178710	235344.0	Mm.104932	NM_178710	ENSMUSG00000037112	Sik2	G630080D20Rik|Snf1lk2	salt inducible kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53198526-4	chr4	53198425	53198625	+	912.841675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-38630.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89802204-2	chr3	89802104	89802304	+	646.400024	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	28595.0	NM_027315	70093.0	Mm.41438	NM_027315	ENSMUSG00000042572	Ube2q1	1110002C01Rik|2310012M18Rik|AI854014|Gtap|NICE-5|PRO3094|Ube2q	ubiquitin-conjugating enzyme E2Q family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117451359-2	chr8	117451259	117451459	+	710.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_028941, intron 14 of 20)	intron (NM_028941, intron 14 of 20)	-1664.0	NR_106045	102466801.0		NR_106045	ENSMUSG00000099062	Mir7077	Gm27774|mmu-mir-7077	microRNA 7077	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-98813818-2	chr7	98813718	98813918	+	723.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21294.0	NM_001285794	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150156389-4	chr4	150156291	150156491	+	966.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085529, intron 4 of 11)	intron (NM_001085529, intron 4 of 11)	7419.0	NM_001085529	435818.0	Mm.359648	NM_001085529	ENSMUSG00000062064	Slc2a7	-	solute carrier family 2 (facilitated glucose transporter), member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-51673397-3	chr12	51673294	51673494	+	785.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001172098, intron 1 of 15)	RMER19B|LTR|ERVK	-17572.0	NM_001329699	11782.0	Mm.386749	NM_021710	ENSMUSG00000020955	Ap4s1	AI314282	adaptor-related protein complex AP-4, sigma 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-39298669-3	chr8	39298563	39298763	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_044988, intron 1 of 3)	intron (NR_044988, intron 1 of 3)	683.0	NR_044988	621335.0	Mm.208080	NR_044988	ENSMUSG00000109827	Gm6213	EG621335	predicted gene 6213	ncRNA	3.09482517329973	3.88771258196824	3.02729704467362	2.24396345617633	4.80352668908033	4.77710984711778	4.6349405458997	4.50606917159764	2.07793276990238	2.14208630383601e-05	0.00085859971514781
Merged-chr6-72377138-3	chr6	72377035	72377235	+	924.2000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016872, intron 1 of 2)	intron (NM_016872, intron 1 of 2)	3333.0	NM_001080742	53620.0	Mm.440321	NM_016872	ENSMUSG00000073002	Vamp5	AF119384|Camp	vesicle-associated membrane protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-34222867-4	chr18	34222760	34222960	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007462, intron 1 of 15)	intron (NM_007462, intron 1 of 15)	-1088.0	NR_040534	633395.0	Mm.414290	NR_040534	ENSMUSG00000073607	Gm10548	-	ribosomal protein L29 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116077631-4	chr11	116077550	116077750	+	984.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001347642)	TTS (NM_001347642)	311.0	NM_001009573	70450.0	Mm.259460	NM_001009573	ENSMUSG00000057948	Unc13d	2610108D09Rik|Jinx|Munc13-4|mFLJ00067	unc-13 homolog D (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6071469-2	chr19	6071369	6071569	+	737.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081041, exon 4 of 10)	exon (NM_001081041, exon 4 of 10)	-3619.0	NM_028454	73166.0	Mm.489613	NM_028454	ENSMUSG00000024799	Tm7sf2	3110041O18Rik|ANG1|C14SR|Dhcr14	transmembrane 7 superfamily member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-10409399-2	chr12	10409299	10409499	+	707.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18619.0	NM_023697	105014.0	Mm.119343	NM_023697	ENSMUSG00000020621	Rdh14	3110030G19Rik|AW215439|PAN2	retinol dehydrogenase 14 (all-trans and 9-cis)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-77982352-2	chr15	77982252	77982452	+	784.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11528.0	NM_018749	55944.0	Mm.3955	NM_018749	ENSMUSG00000016554	Eif3d	66/67kDa|AA407891|Eif3s7|eIF3p66	eukaryotic translation initiation factor 3, subunit D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-110764743-4	chr12	110764645	110764845	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347428, intron 1 of 2)	intron (NM_001347428, intron 1 of 2)	26813.0	NM_001347428	69641.0	Mm.475762	NM_027149	ENSMUSG00000037957	Wdr20	2310040A13Rik|AI549910|Wdr20a	WD repeat domain 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-35165423-4	chr4	35165313	35165513	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7929.0	NM_178061	214944.0	Mm.32968	NM_178061	ENSMUSG00000073910	Mob3b	8430436F23Rik|A430018A01Rik|Mobkl2b	MOB kinase activator 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70770314-1	chr14	70770214	70770414	+	642.0	f1_balb.idr	Intergenic	ID_B1|SINE|B4	-3686.0	NM_023045	65246.0	Mm.152987	NM_023045	ENSMUSG00000022100	Xpo7	4930506C02Rik|BB164534|Ranbp16|exp7	exportin 7	protein-coding	0.774989858461773	1.48414070644347	1.69711386156852	1.21987228112323	0.77914001746381	1.78428999609391	2.26654876350948	0.805110022671236	0.753717629023783	0.586366080944164	0.967794420281743
Merged-chr14-18234996-4	chr14	18234885	18235085	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011584, intron 1 of 7)	intron (NM_011584, intron 1 of 7)	4121.0	NM_011584	353187.0	Mm.26587	NM_011584	ENSMUSG00000021775	Nr1d2	RVR|Rev-erb	nuclear receptor subfamily 1, group D, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118605320-2	chr9	118605220	118605420	+	906.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-1389.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150545958-1	chr4	150545858	150546058	+	671.0	f1_c57bl6.idr	intron (NM_001085492, intron 11 of 22)	RMER19B|LTR|ERVK	106216.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-9946681-4	chr3	9946583	9946783	+	967.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65902.0	NM_001272097	16592.0	Mm.741	NM_010634	ENSMUSG00000027533	Fabp5	E-FABP|Fabpe|Klbp|PA-FABP|mal1	fatty acid binding protein 5, epidermal	protein-coding	4.35672356512884	4.10208668946609	5.02719244695087	3.92376057173278	4.51032728483092	4.57798047348615	4.72326920756743	4.07710604343036	0.0863040580999379	0.834922554088956	0.998431161219273
Merged-chr15-84889587-1	chr15	84889487	84889687	+	551.0	f0_c57.idr	Intergenic	Intergenic	-33458.0	NR_030731	271305.0	Mm.101022	NM_001081166	ENSMUSG00000016624	Phf21b	A730032D07Rik	PHD finger protein 21B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-32280558-4	chr4	32280483	32280683	+	902.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-136852.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	-1.36160253971502	-1.47814700641377	-1.48769298626929	-1.49553433834613	-1.35776282922893	-1.32587650976972	-1.48553198567192	-1.49413074007343	0.714701438935652	0.82496834672405	1
Merged-chr6-40430371-3	chr6	40430274	40430474	+	638.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356375, intron 1 of 8)	intron (NM_001356375, intron 1 of 8)	5761.0	NM_001356375	243780.0	Mm.333006	NM_175528	ENSMUSG00000037172	E330009J07Rik	AI841796|Lchn|mKIAA1147	RIKEN cDNA E330009J07 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-118575117-1	chr14	118575017	118575217	+	663.0	f1_balb.idr	intron (NM_001163676, intron 18 of 29)	intron (NM_001163676, intron 18 of 29)	17355.0	NR_105815	102465208.0		NR_105815	ENSMUSG00000098433	Mir6391	Gm27914|mmu-mir-6391	microRNA 6391	ncRNA	0.360505983555656	0.388168346961924	0.57586702577986	1.24205789449086	0.895723218079099	0.390177200115857	0.381187840834784	1.1656210088834	0.246982974483704	0.892450996883213	1
Merged-chr1-133610384-4	chr1	133610303	133610503	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009227)	promoter-TSS (NM_009227)	-123.0	NM_009227	20643.0	Mm.249110	NM_009227	ENSMUSG00000090553	Snrpe	AL022645|C76690|SME	small nuclear ribonucleoprotein E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-49190210-4	chr13	49190113	49190313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013610, intron 1 of 3)	intron (NM_013610, intron 1 of 3)	2666.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-126155271-4	chr4	126155156	126155356	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025856, intron 6 of 11)	MTE2a|LTR|ERVL-MaLR	7253.0	NM_172145	230752.0	Mm.41569	NM_172145	ENSMUSG00000050212	Eva1b	2610027C15Rik|Fam176b	eva-1 homolog B (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28208604-2	chr17	28208504	28208704	+	562.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027185, intron 1 of 10)	intron (NM_027185, intron 1 of 10)	826.0	NM_027185	23853.0	Mm.204731	NM_027185	ENSMUSG00000002257	Def6	2410003F05Rik|6430538D02Rik|AV094905|Ibp|Slat|Slat2|Slat6	differentially expressed in FDCP 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-77755470-2	chr15	77755370	77755570	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081970)	promoter-TSS (NM_001081970)	-197.0	NM_001081970	239552.0	Mm.125650	NM_001081970	ENSMUSG00000056656	Apol8	9830006J20Rik|APOL-II|Apol2	apolipoprotein L 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-158077582-4	chr3	158077494	158077694	+	973.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40912.0	NM_001289524	67144.0	Mm.358704	NM_024194	ENSMUSG00000063052	Lrrc40	2610040E16Rik|AI837674	leucine rich repeat containing 40	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5354047-2	chr19	5353947	5354147	+	765.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4473.0	NM_028623	73720.0	Mm.36816	NM_028623	ENSMUSG00000024846	Cst6	1110017E11Rik|N28197|ichq	cystatin E/M	protein-coding	-0.953852725537661	-0.938954416352047	-0.948469824706124	-0.536623461716514	-0.582072368205537	-0.936410107061028	-0.947886214382756	-0.950144718708725	-0.189260031779864	0.952524681432003	1
Merged-chr6-108398290-4	chr6	108398186	108398386	+	932.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 30 of 61)	intron (NM_010585, intron 30 of 61)	-91457.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-120515440-4	chr5	120515329	120515529	+	978.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177595, intron 2 of 13)	RSINE1|SINE|B4	4237.0	NM_001177594	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-73566293-4	chr2	73566183	73566383	+	897.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007389, exon 9 of 9)	exon (NM_007389, exon 9 of 9)	14055.0	NM_007389	11435.0	Mm.4583	NM_007389	ENSMUSG00000027107	Chrna1	AI385656|AI608266|Achr-1|Acra	cholinergic receptor, nicotinic, alpha polypeptide 1 (muscle)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28175530-4	chr7	28175411	28175611	+	972.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007991, intron 4 of 8)	intron (NM_007991, intron 4 of 8)	-3972.0	NM_001037957	13549.0	Mm.57249	NM_010092	ENSMUSG00000002409	Dyrk1b	Mirk	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43482199-2	chr4	43482151	43482351	+	900.75	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_019436, exon 5 of 5)	3' UTR (NM_019436, exon 5 of 5)	1458.0	NM_019436	54390.0	Mm.31775	NM_019436	ENSMUSG00000028460	Sit1	Sit	suppression inducing transmembrane adaptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97331051-2	chr6	97330951	97331151	+	768.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 8 of 23)	MTEa|LTR|ERVL-MaLR	-78271.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10034966-3	chr19	10034853	10035053	+	863.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_153790, exon 10 of 11)	non-coding (NR_153790, exon 10 of 11)	-6595.0	NM_021890	60527.0	Mm.253875	NM_021890	ENSMUSG00000024664	Fads3	AI464531	fatty acid desaturase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165888532-2	chr2	165888432	165888632	+	695.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3694.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-103756425-4	chr5	103756361	103756561	+	932.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080798, intron 1 of 19)	intron (NM_001080798, intron 1 of 19)	1888.0	NM_001080798	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-145115495-2	chr3	145115395	145115595	+	646.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3094.0	NM_001162539	52184.0	Mm.259105	NM_025714	ENSMUSG00000028256	Odf2l	4733401D09Rik|9630045K08Rik|D3Ertd250e	outer dense fiber of sperm tails 2-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-11338398-4	chr12	11338297	11338497	+	772.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012038, intron 2 of 3)	intron (NM_012038, intron 2 of 3)	38510.0	NR_106136	102465775.0		NR_106136	ENSMUSG00000098879	Mir7675	Gm27965|mmu-mir-7675	microRNA 7675	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-94969159-1	chr16	94969059	94969259	+	1000.0	f0_balb.idr	intron (NM_001025584, intron 1 of 4)	intron (NM_001025584, intron 1 of 4)	28537.0	NM_001025584	16522.0	Mm.328720	NM_010606	ENSMUSG00000043301	Kcnj6	BIR1|GIRK2|KATP2|KCNJ7|Kir3.2|weaver|wv	potassium inwardly-rectifying channel, subfamily J, member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-173428087-2	chr1	173427987	173428187	+	832.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013779, intron 2 of 8)	B2_Mm2|SINE|B2	7483.0	NM_001013779	383619.0	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132986666-1	chr4	132986566	132986766	+	612.0	f1_balb.idr	intron (NM_010208, intron 3 of 12)	IMPB_01|Satellite|Satellite	12571.0	NM_010208	14191.0	Mm.271665	NM_010208	ENSMUSG00000028874	Fgr	-	FGR proto-oncogene, Src family tyrosine kinase	protein-coding	-0.00154757468854186	0.485320470530921	0.00851321563518742	0.295049443815568	-0.000616427520840873	0.494543288350014	0.00959845231313597	0.299479634921591	0.0355360654630842	0.986652218974	1
Merged-chr19-11922332-3	chr19	11922239	11922439	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172635, intron 5 of 18)	intron (NM_172635, intron 5 of 18)	-1389.0	NR_105960	102465601.0		NR_105960	ENSMUSG00000104979	Mir6994	mmu-mir-6994	microRNA 6994	ncRNA	0.389780196689782	0.746045033326806	0.140864280229497	0.136476012031957	0.130282112069776	0.147843419428075	0.595327293864515	0.558554925466478	-0.0264549793276758	0.989556229921931	1
Merged-chr14-14673460-3	chr14	14673342	14673542	+	836.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29583.0	NM_001360505	218756.0	Mm.258893	NM_001033270	ENSMUSG00000021733	Slc4a7	E430014N10Rik|NBC3|NBCn1|NBCn1-G|Tg(Thy1-SNCA)12Mjff	solute carrier family 4, sodium bicarbonate cotransporter, member 7	protein-coding	0.969730632991647	2.20419641832128	1.5211295426804	1.01196977689128	2.31328153696984	1.95001498124149	2.87882037552545	1.2733834169025	1.77984893292037	0.121838012249004	0.547245267450283
Merged-chr2-152812228-2	chr2	152812128	152812328	+	650.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009743, intron 2 of 2)	PB1D7|SINE|Alu	16261.0	NR_149254	12048.0	Mm.238213	NM_009743	ENSMUSG00000007659	Bcl2l1	Bcl(X)L|Bcl-XL|Bcl2l|BclX|bcl-x|bcl2-L-1	BCL2-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-37135671-4	chr19	37135594	37135794	+	818.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290829, intron 3 of 9)	(T)n|Simple_repeat|Simple_repeat	-38149.0	NR_045329	319931.0	Mm.446730	NR_045329	ENSMUSG00000097591	A330032B11Rik	-	RIKEN cDNA A330032B11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-70987554-4	chr17	70987460	70987660	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023402, intron 1 of 3)	B4A|SINE|B4	2956.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-43483744-2	chr15	43483644	43483844	+	887.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_025736, intron 1 of 10)	L1_Mus2|LINE|L1	6515.0	NM_025736	66736.0	Mm.244512	NM_025736	ENSMUSG00000022337	Emc2	4921531G14Rik|AV060620|AW209495|Ttc35	ER membrane protein complex subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171262871-2	chr1	171262763	171262963	+	841.8333130000001	f1_balb.idr|f1_c57bl6.idr	TTS (NM_172845)	TTS (NM_172845)	-7465.0	NM_020579	57370.0	Mm.274011	NM_020579	ENSMUSG00000052423	B4galt3	9530061M23Rik|AA104562|AW125175|ESTM26|ESTM6|R74981	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 3	protein-coding	1.33731848101733	1.89460146830537	1.71263995445846	1.77477572671422	1.01593889695689	1.48841983170019	1.72623539834488	1.6727882737047	-0.637889144841983	0.576190735153952	0.965286201225318
Merged-chr3-153616068-2	chr3	153615968	153616168	+	882.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011372, intron 1 of 4)	intron (NM_011372, intron 1 of 4)	109065.0	NM_011372	20447.0	Mm.296453	NM_011372	ENSMUSG00000052544	St6galnac3	Siat7c	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-83129747-4	chr15	83129653	83129853	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347082, intron 6 of 7)	intron (NM_001347082, intron 6 of 7)	-6952.0	NM_029101	74778.0	Mm.30056	NM_029101	ENSMUSG00000018040	Rrp7a	1110014J01Rik|AA408146|Kheg1	ribosomal RNA processing 7 homolog A (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-64517462-3	chr18	64517433	64517633	+	865.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027350)	promoter-TSS (NM_027350)	-976.0	NM_001142950	70223.0	Mm.29192	NM_027350	ENSMUSG00000024587	Nars	3010001M15Rik|AA960128|ASNRS|C78150	asparaginyl-tRNA synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-143919106-3	chr1	143919018	143919218	+	776.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	85031.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3858658-2	chr12	3858558	3858758	+	819.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_045884)	TTS (NR_045884)	3586.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-100761720-4	chr15	100761618	100761818	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021530)	promoter-TSS (NM_021530)	-29.0	NM_021530	59033.0	Mm.209856	NM_021530	ENSMUSG00000023032	Slc4a8	AW493845|C230026C11|NDCBE|kNBC-3	solute carrier family 4 (anion exchanger), member 8	protein-coding	1.65997635256051	1.19665521266655	2.20584007560408	2.65002025929423	2.14012057615164	1.20306175619063	1.64135320336956	2.66424113397106	-0.0318284019070116	0.976797069407538	0.998431161219273
Merged-chr7-132610659-4	chr7	132610563	132610763	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029609)	promoter-TSS (NM_029609)	20.0	NM_029609	76429.0	Mm.276721	NM_029609	ENSMUSG00000030946	Lhpp	2310007H09Rik	phospholysine phosphohistidine inorganic pyrophosphate phosphatase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-78865794-1	chr12	78865694	78865894	+	590.0	f1_balb.idr	intron (NM_026114, intron 1 of 7)	intron (NM_026114, intron 1 of 7)	3722.0	NM_026114	13665.0	Mm.196220	NM_026114	ENSMUSG00000021116	Eif2s1	0910001O23Rik|2410026C18Rik|35kDa|Eif2a|eIF2alpha	eukaryotic translation initiation factor 2, subunit 1 alpha	protein-coding	0.142082975875048	0.0151674891642767	0.187286554137644	0.804176878836355	0.146320926245295	0.377720171687537	0.0108729369771149	0.00614707896661343	-1.4270677872588	0.476028900601107	1
Merged-chr5-12562400-2	chr5	12562300	12562500	+	639.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028882, intron 11 of 17)	intron (NM_028882, intron 11 of 17)	179234.0	NM_028882	108151.0	Mm.89313	NM_028882	ENSMUSG00000040254	Sema3d	4631426B19Rik	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-78243507-2	chr11	78243444	78243644	+	584.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_009297, intron 1 of 36)	intron (NM_009297, intron 1 of 36)	2159.0	NM_009297	20926.0	Mm.20755	NM_009297	ENSMUSG00000002052	Supt6	5131400N11Rik|AI132449|SPT6|Supt6h|mKIAA0162	suppressor of Ty 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70131540-2	chr14	70131440	70131640	+	659.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021328, intron 6 of 8)	intron (NM_021328, intron 6 of 8)	22251.0	NM_146055	219158.0	Mm.218284	NM_146055	ENSMUSG00000033712	Ccar2	2610301G19Rik|Dbc1|mKIAA1967	cell cycle activator and apoptosis regulator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-70804801-4	chr6	70804683	70804883	+	964.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12608.0	NM_009075	19895.0	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-130802958-4	chr4	130802806	130803006	+	786.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011520, intron 1 of 4)	intron (NM_011520, intron 1 of 4)	10369.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-105104911-2	chr1	105104811	105105011	+	607.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-251096.0	NR_151539	100504568.0	Mm.321153	NR_151538	ENSMUSG00000097482	Gm17634	-	predicted gene, 17634	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69682535-2	chr11	69682435	69682635	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163571)	promoter-TSS (NM_001163571)	-451.0	NM_001163571	80886.0	Mm.284592	NM_030702	ENSMUSG00000005204	Senp3	AA408656|Smt3ip|Smt3ip1	SUMO/sentrin specific peptidase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91080337-3	chr2	91080217	91080417	+	826.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-10002.0	NM_001290765	68427.0	Mm.192375	NM_026721	ENSMUSG00000002105	Slc39a13	1100001L14Rik|AA387663|ZIP-13|ZIP13	solute carrier family 39 (metal ion transporter), member 13	protein-coding	1.06720654402857	0.630980961124195	0.841650966599845	2.01471617868362	0.58880632838194	0.634180707947384	1.19456851919508	1.27857978377959	-1.15723035817327	0.445141993448937	0.91264757987019
Merged-chr10-127471618-2	chr10	127471518	127471718	+	764.8000490000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359245, intron 11 of 23)	intron (NM_001359245, intron 11 of 23)	-30068.0	NM_001359751	237611.0	Mm.32087	NM_177707	ENSMUSG00000040287	Stac3	9830125E18	SH3 and cysteine rich domain 3	protein-coding	-1.06932346315282	-1.04545378193536	-0.220844647149311	-1.06494782147003	-1.06867040657128	-1.04264807175102	-1.05547001227371	-1.06448932552894	-3.08190232315036	0.346744811462451	1
Merged-chr14-10439126-2	chr14	10439026	10439226	+	605.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360141, intron 4 of 9)	intron (NM_001360141, intron 4 of 9)	14332.0	NM_001308286	14198.0	Mm.397619	NM_010210	ENSMUSG00000060579	Fhit	AW045638|Fra14A2	fragile histidine triad gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127873210-4	chr7	127873102	127873302	+	856.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362192, intron 2 of 4)	intron (NM_001362192, intron 2 of 4)	2440.0	NM_001362192	244219.0	Mm.207872	NM_146259	ENSMUSG00000049728	Zfp668	BC030314|E130018B19Rik|Znf668	zinc finger protein 668	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-89289431-4	chr6	89289308	89289508	+	992.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-3683.0	NR_131021	75131.0	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	Gm44205	RIKEN cDNA 4930512J16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-120835905-2	chr7	120835806	120836006	+	1000.0	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-6925.0	NM_007908	13631.0	Mm.25997	NM_007908	ENSMUSG00000035064	Eef2k	C86191|eEF-2K	eukaryotic elongation factor-2 kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-104111354-3	chr8	104111251	104111451	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009868, intron 1 of 11)	intron (NM_009868, intron 1 of 11)	-5478.0	NR_131138	546096.0	Mm.252264	NR_131138	ENSMUSG00000110053	Gm29682	Gm45664	predicted gene, 29682	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32496338-4	chr2	32496242	32496442	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39017.0	NM_153560	98952.0	Mm.4065	NM_153560	ENSMUSG00000039157	Fam102a	AI426465|C230093N12Rik|Eeig1	family with sequence similarity 102, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-83802154-4	chr7	83802048	83802248	+	866.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7309.0	NM_029335	75556.0	Mm.17649	NM_029335	ENSMUSG00000011154	Cfap161	1700026D08Rik|AW047638|AW551802	cilia and flagella associated protein 161	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-121706757-4	chr7	121706587	121706787	+	783.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001033173, exon 1 of 16)	exon (NM_001033173, exon 1 of 16)	566.0	NM_001033173	76179.0	Mm.122538	NM_001033173	ENSMUSG00000063317	Usp31	6330567E21Rik|mKIAA1203	ubiquitin specific peptidase 31	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-14506291-2	chr19	14506191	14506391	+	556.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001302951, intron 8 of 19)	PB1D11|SINE|Alu	-67785.0	NR_003027	19862.0		NR_003027	ENSMUSG00000095132	Rnu6	-	U6 small nuclear RNA	snRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-116957833-4	chr13	116957735	116957935	+	836.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081009, intron 3 of 26)	intron (NM_001081009, intron 3 of 26)	67681.0	NM_001081009	52552.0	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-93691394-2	chr16	93691250	93691450	+	800.0	f0_balb.idr|f1_balb.idr	TTS (NM_173047)	TTS (NM_173047)	8131.0	NM_173047	109857.0	Mm.4512	NM_173047	ENSMUSG00000022947	Cbr3	1110001J05Rik|C81353	carbonyl reductase 3	protein-coding	1.97991264254288	3.21515359984369	3.56804528409405	1.51722981307363	1.84134442290295	2.79984388999329	1.57870709496455	1.94731999448813	-1.3799798437166	0.133687134401207	0.571352970272745
Merged-chr9-109200548-3	chr9	109200459	109200659	+	858.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-4584.0	NM_177598	211305.0	Mm.225242	NM_177598	ENSMUSG00000049314	Fbxw13	E330017E16	F-box and WD-40 domain protein 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-38132666-8	chr16	38132567	38132767	+	901.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347232, intron 1 of 11)	intron (NM_001347232, intron 1 of 11)	-43407.0	NR_033221	414072.0	Mm.483602	NR_033221		BC031361	-	cDNA sequence BC031361	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-42083882-2	chr9	42083782	42083982	+	587.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_011436, intron 5 of 47)	intron (NM_011436, intron 5 of 47)	-6669.0	NM_001357261	20660.0	Mm.121920	NM_011436	ENSMUSG00000049313	Sorl1	2900010L19Rik|AI596264|AW261561|LR11|SorLA|gp250|mSorLA	sortilin-related receptor, LDLR class A repeats-containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-88624326-1	chr8	88624226	88624426	+	627.400024	f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	11802.0	NM_027840	71607.0	Mm.270607	NM_027840	ENSMUSG00000031662	Snx20	9130017C17Rik	sorting nexin 20	protein-coding	0.84067005202408	0.211040789763427	0.201886431101871	1.40722713976817	0.361374286507327	0.444773141339965	0.203916955302415	0.195986706741923	-2.876552927971	0.13742310135704	1
Merged-chr3-41452239-3	chr3	41452127	41452327	+	672.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR37B|LTR|ERV1	40972.0	NR_040385	78706.0	Mm.366094	NR_040385	ENSMUSG00000097639	Platr4	C430002E04Rik	pluripotency associated transcript 4	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-17866760-4	chr17	17866655	17866855	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus4|LINE|L1	-11567.0	NM_008215	15116.0	Mm.255701	NM_008215	ENSMUSG00000003665	Has1	HAS	hyaluronan synthase 1	protein-coding	3.6199809681832	3.7367833116842	3.98573579836241	3.32317077858915	4.04467246583917	4.21050309242602	4.4043212613778	4.07662318293478	0.706886156520993	0.117959928637184	0.538905416826286
Merged-chr1-61690861-3	chr1	61690776	61690976	+	810.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081050, intron 1 of 22)	MIR|SINE|MIR	52052.0	NM_001081050	72823.0	Mm.35153	NM_001081050	ENSMUSG00000052062	Pard3b	1810008K04Rik|2010002N16Rik|2810455B10Rik|Als2cr19|PAR3B|PAR3L|PAR3beta	par-3 family cell polarity regulator beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-127251928-4	chr6	127251827	127252027	+	748.837524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56040.0	NR_073373	232386.0	Mm.257367	NR_073373	ENSMUSG00000107153	Gm38404	D130058E03	predicted gene, 38404	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28429013-4	chr17	28428908	28429108	+	844.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010220, intron 4 of 10)	intron (NM_010220, intron 4 of 10)	57141.0	NM_010220	14229.0	Mm.276405	NM_010220	ENSMUSG00000024222	Fkbp5	D17Ertd592e|Dit1|FKBP-5|FKBP51	FK506 binding protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-37968833-2	chr18	37968733	37968933	+	643.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175684, intron 2 of 19)	intron (NM_175684, intron 2 of 19)	898.0	NM_175684	319262.0	Mm.285060	NM_175684	ENSMUSG00000038524	Fchsd1	A030002D08Rik	FCH and double SH3 domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-87652434-4	chr4	87652330	87652530	+	876.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	153893.0	NM_001286158	70122.0	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-118836766-2	chr12	118836666	118836866	+	608.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-9563.0	NM_177082	320145.0	Mm.51682	NM_177082	ENSMUSG00000048562	Sp8	D930049B17Rik|mBtd	trans-acting transcription factor 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-91066629-2	chr1	91066529	91066729	+	788.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008515, intron 1 of 22)	intron (NM_008515, intron 1 of 22)	13185.0	NM_001310732	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-18952243-3	chr2	18952143	18952343	+	864.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008845, intron 1 of 9)	intron (NM_008845, intron 1 of 9)	45878.0	NM_008845	18718.0	Mm.313977	NM_008845	ENSMUSG00000026737	Pip4k2a	AW742916|Pip5k2a	phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21100701-3	chr9	21100580	21100780	+	573.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8672.0	NR_038081	100568458.0	Mm.196137	NR_038081		Gm38431	Raver1-fdx1l	predicted gene, 38431	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-86531077-3	chr1	86530983	86531183	+	912.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001360831)	TTS (NM_001360831)	4526.0	NM_001360830	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101509103-2	chr15	101509003	101509203	+	613.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16|LTR|ERVK	5287.0	NR_002872	574415.0	Mm.491077	NR_002872		Gm6042	EG574415|Kb32p|Krt89	type II keratin Kb32P	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127801685-2	chr7	127801585	127801785	+	664.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001040684, intron 3 of 6)	intron (NM_001040684, intron 3 of 6)	1076.0	NM_001040684	101502.0	Mm.157103	NM_133943	ENSMUSG00000042289	Hsd3b7	AI195443|BB098564	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-72538341-4	chr11	72538270	72538470	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029932, exon 5 of 12)	exon (NM_029932, exon 5 of 12)	11876.0	NM_029932	77577.0	Mm.46185	NM_029932	ENSMUSG00000020798	Spns3	9830002I17Rik	spinster homolog 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41074426-2	chr19	41074326	41074526	+	690.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153520, intron 1 of 5)	intron (NM_153520, intron 1 of 5)	2687.0	NM_153520	226115.0	Mm.54119	NM_153520	ENSMUSG00000050121	Opalin	Tmem10|Tmp10	oligodendrocytic myelin paranodal and inner loop protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-32055365-4	chr4	32055317	32055517	+	962.8916630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	91310.0	NM_172688	26409.0	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding	6.15162511151417	5.1961942504872	4.41882103962782	4.65968190119277	5.49581920330918	5.26835245997663	5.75448544422487	4.77136022762343	0.0874407825919756	0.823774137714953	0.998431161219273
Merged-chr17-29014579-1	chr17	29014479	29014679	+	632.0	f1_c57bl6.idr	Intergenic	Intergenic	-6584.0	NM_001357173	106504.0	Mm.439986	NM_134115	ENSMUSG00000024006	Stk38	5830476G13Rik|9530097A09Rik|AA617404|Ndr1	serine/threonine kinase 38	protein-coding	1.48237169479088	1.436464388375	0.638786793416535	1.10362857988032	0.925268061313969	0.652192821737583	0.641214218104718	1.11038475187561	-1.69378810133629	0.271563808991469	0.775081570630341
Merged-chr18-47370431-3	chr18	47370339	47370539	+	855.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1569.0	NM_001311097	20358.0	Mm.40909	NM_018744	ENSMUSG00000019647	Sema6a	A730020P05Rik|AI851735|Sema6A-1|Semaq|VIa	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-32856880-3	chr18	32856774	32856974	+	816.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110015, intron 16 of 22)	intron (NM_001110015, intron 16 of 22)	-19587.0	NR_045381	75795.0	Mm.382634	NR_045381	ENSMUSG00000097553	4930455D15Rik	-	RIKEN cDNA 4930455D15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-102001331-2	chr7	102001231	102001431	+	738.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_133947, exon 14 of 25)	exon (NM_133947, exon 14 of 25)	16824.0	NM_010531	16068.0	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-57953046-4	chr4	57952964	57953164	+	980.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011660, intron 1 of 4)	intron (NM_011660, intron 1 of 4)	3347.0	NM_011660	22166.0	Mm.260618	NM_011660	ENSMUSG00000028367	Txn1	ADF|AW550880|Trx1|Txn	thioredoxin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-120684797-2	chr7	120684697	120684897	+	911.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164580, intron 1 of 2)	intron (NM_001164580, intron 1 of 2)	7177.0	NM_001164580	233812.0	Mm.276479	NM_001164580	ENSMUSG00000046096	Mosmo	Atthog	modulator of smoothened	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-86880378-3	chr8	86880276	86880476	+	823.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030563, intron 1 of 6)	intron (NM_030563, intron 1 of 6)	4882.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	2.77497539652503	3.31313923038497	2.14888466559912	3.41578573054869	3.33598264280221	3.58107374203319	2.36105661289992	3.21310442084666	0.324840200588865	0.633388268789502	0.982417279970648
Merged-chr7-126784602-2	chr7	126784502	126784702	+	703.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_011538, exon 6 of 8)	exon (NM_011538, exon 6 of 8)	3119.0	NM_011538	21389.0	Mm.727	NM_011538	ENSMUSG00000030699	Tbx6	rv	T-box 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-31018467-4	chr17	31018372	31018572	+	857.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39222.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-80100826-2	chr12	80100726	80100926	+	640.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12187.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-68094000-3	chr7	68093907	68094107	+	834.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010513, intron 2 of 20)	intron (NM_010513, intron 2 of 20)	141750.0	NM_010513	16001.0	Mm.275742	NM_010513	ENSMUSG00000005533	Igf1r	A330103N21Rik|CD221|D930020L01|IGF-1R|hyft	insulin-like growth factor I receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-97589645-1	chr7	97589545	97589745	+	586.0	f0_balb.idr	intron (NM_001081267, intron 1 of 15)	intron (NM_001081267, intron 1 of 15)	9749.0	NM_001081267	233532.0	Mm.43977	NM_001081267	ENSMUSG00000035623	Rsf1	4832420A03Rik|C030033M12Rik|Gm164|Hbxap|XAP8|p325	remodeling and spacing factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107908599-2	chr9	107908499	107908699	+	655.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_109782, intron 1 of 18)	intron (NR_109782, intron 1 of 18)	1710.0	NM_009074	19882.0	Mm.3901	NM_009074	ENSMUSG00000032584	Mst1r	CD136|CDw136|Fv-2|Fv2|PTK8|Ron|STK	macrophage stimulating 1 receptor (c-met-related tyrosine kinase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-121340497-3	chr3	121340392	121340592	+	600.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155539, intron 2 of 2)	MLT1A0|LTR|ERVL-MaLR	48752.0	NM_024178	66789.0	Mm.269881	NM_024178	ENSMUSG00000039887	Alg14	5430428G01Rik|AI854024	asparagine-linked glycosylation 14	protein-coding	0.404726464811328	0.432978668008011	0.423820704671503	0.884510496846644	1.34447154294496	0.979356476845871	0.932204695371826	0.417941284352002	2.30635310619697	0.20106149815772	1
Merged-chr5-31049481-4	chr5	31049343	31049543	+	855.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177621)	promoter-TSS (NM_001177621)	-519.0	NM_001177622	330064.0	Mm.205463	NM_177870	ENSMUSG00000006641	Slc5a6	E430023I20	solute carrier family 5 (sodium-dependent vitamin transporter), member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-118522243-4	chr7	118522129	118522329	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304758, intron 5 of 6)	ORR1E|LTR|ERVL-MaLR	11127.0	NM_001304758	12850.0	Mm.20634	NM_009940	ENSMUSG00000030652	Coq7	clk-1	demethyl-Q 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-57227902-2	chr16	57227802	57228002	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026254, intron 1 of 17)	intron (NM_026254, intron 1 of 17)	3564.0	NM_026254	67581.0	Mm.257819	NM_026254	ENSMUSG00000022749	Tbc1d23	4930451A13Rik|AU015720|AU043671|AU043778|D030022P07Rik|W51689	TBC1 domain family, member 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-80219406-4	chr15	80219287	80219487	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14693.0	NM_001357659	239555.0	Mm.307163	NM_178719	ENSMUSG00000022412	Mief1	A230016E22|AI452372|Smcr7l	mitochondrial elongation factor 1	protein-coding	5.06596072220158	5.11325015269734	5.63983135697618	5.27154443485878	4.71377729298051	5.59336413530868	4.77413670403633	5.32335451468895	-0.171410902489103	0.596407476889791	0.971586575449917
Merged-chr17-34239892-4	chr17	34239810	34240010	+	993.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010389, intron 1 of 5)	intron (NM_010389, intron 1 of 5)	1005.0	NM_010389	15002.0	Mm.327358	NM_010389	ENSMUSG00000041538	H2-Ob	A-beta-2|A-beta2|H-2Ab|H-2I|H-2Ob|H2-Ab|H2-Ab2|H2-IAb2|Ob	histocompatibility 2, O region beta locus	protein-coding	5.83889879429276	6.3676346897758	6.28503827927025	5.92387149573459	4.29694125049745	5.1497578683772	5.26064343592475	5.24796430305332	-1.22733076176362	2.52658817233127e-05	0.000984220938039956
Merged-chr5-125475816-4	chr5	125475745	125475945	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030210)	promoter-TSS (NM_030210)	-28.0	NM_030210	78894.0	Mm.431573	NM_030210	ENSMUSG00000029482	Aacs	2210408B16Rik|SUR5	acetoacetyl-CoA synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-114964384-4	chr13	114964244	114964444	+	970.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033228, intron 28 of 28)	intron (NM_001033228, intron 28 of 28)	-32244.0	NM_008396	16398.0	Mm.5007	NM_008396	ENSMUSG00000015533	Itga2	CD49B|DX5|GPIa	integrin alpha 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-99265501-4	chr10	99265400	99265600	+	996.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026268, intron 2 of 2)	intron (NM_026268, intron 2 of 2)	2269.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95892767-1	chr3	95892667	95892867	+	1000.0	f1_c57bl6.idr	promoter-TSS (NM_001346514)	promoter-TSS (NM_001346514)	-762.0	NM_001346514	229600.0	Mm.89556	NM_153513	ENSMUSG00000038543	BC028528	L259	cDNA sequence BC028528	protein-coding	0.91311501465554	1.40749182765038	0.268736448328194	0.889843523758834	0.250000336561236	0.280760630326132	0.270917842294012	0.262394677484834	-4.53292906702936	0.0169111648741303	1
Merged-chr4-43267135-4	chr4	43267015	43267215	+	826.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177195)	promoter-TSS (NM_177195)	-44.0	NM_177195	320571.0	Mm.74465	NM_177195	ENSMUSG00000028457	Atp8b5	4930417M19Rik|Feta	ATPase, class I, type 8B, member 5	protein-coding	2.49351969055584	1.34114727904354	2.21556465038271	2.36904198040079	1.80353322189905	2.31089642055306	2.80432364968329	1.72467878296827	0.136916653132992	0.885937334449428	0.998431161219273
Merged-chr3-108910532-2	chr3	108910432	108910632	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025845, intron 1 of 5)	intron (NM_025845, intron 1 of 5)	1197.0	NM_025845	66921.0	Mm.51049	NM_025845	ENSMUSG00000027881	Prpf38b	1110021E09Rik|AU018955	PRP38 pre-mRNA processing factor 38 (yeast) domain containing B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-9515945-4	chr16	9515878	9516078	+	634.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	476555.0	NM_008170	14811.0	Mm.2953	NM_008170	ENSMUSG00000059003	Grin2a	GluN2A|GluRepsilon1|NMDAR2A|NR2A	glutamate receptor, ionotropic, NMDA2A (epsilon 1)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-111180157-4	chr8	111180064	111180264	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009149, intron 10 of 25)	intron (NM_009149, intron 10 of 25)	-34666.0	NR_040364	434350.0	Mm.442061	NR_040363		9430091E24Rik	-	RIKEN cDNA 9430091E24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-109693369-4	chr8	109693275	109693475	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028018)	promoter-TSS (NM_028018)	-81.0	NM_001361562	71955.0	Mm.290036	NM_028018	ENSMUSG00000031729	Ist1	2400003C14Rik|AW536298|mKIAA0174	increased sodium tolerance 1 homolog (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-143748614-3	chr7	143748526	143748726	+	834.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6663.0	NM_024289	79196.0	Mm.21199	NM_024289	ENSMUSG00000037606	Osbpl5	1110006M06Rik|AI462538|ORP5|Obph1|Osbp2	oxysterol binding protein-like 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70873613-7	chr8	70873498	70873698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026964)	promoter-TSS (NM_026964)	-108.0	NM_026964	234388.0	Mm.295791	NM_026964	ENSMUSG00000007721	Ccdc124	1810023B24Rik	coiled-coil domain containing 124	protein-coding	2.63474865193338	2.84331588962165	2.9702102471151	3.07067317714661	3.85859168343892	1.96413039240856	2.76756640798917	3.24659332407617	0.465666419091115	0.513802335645794	0.9463431014646
Merged-chr17-79894420-2	chr17	79894320	79894520	+	663.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357752, intron 1 of 13)	intron (NM_001357752, intron 1 of 13)	1703.0	NM_178050	56298.0	Mm.175403	NM_019717	ENSMUSG00000059811	Atl2	2010110I21Rik|AA407293|AV334690|Aip-2|Arl6ip2	atlastin GTPase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-97995013-4	chr3	97994889	97995089	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18549.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132783981-2	chr4	132783900	132784100	+	604.75	f0_balb.idr|f1_c57bl6.idr	intron (NM_001033308, intron 4 of 5)	intron (NM_001033308, intron 4 of 5)	12364.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	0.33398770455473	0.905928690269609	1.09173604717492	1.22437284641268	0.33575869821326	0.583566148385973	0.354856520092761	0.347049522110034	-3.65296505759193	0.048836860340662	1
Merged-chr2-135424613-2	chr2	135424513	135424713	+	680.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019677, intron 32 of 32)	MTC|LTR|ERVL-MaLR	158607.0	NR_015544	320684.0	Mm.421433	NR_015544	ENSMUSG00000085631	9630028H03Rik	-	RIKEN cDNA 9630028H03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111182072-4	chr12	111181975	111182175	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_130987, intron 1 of 3)	intron (NR_130987, intron 1 of 3)	2416.0	NR_130987	78062.0	Mm.427248	NR_130987	ENSMUSG00000083193	4930595D18Rik	-	RIKEN cDNA 4930595D18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-4552866-2	chr2	4552766	4552966	+	603.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 11 of 23)	(TAAA)n|Simple_repeat|Simple_repeat	-6888.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-59218166-2	chr12	59218066	59218266	+	809.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033156, intron 1 of 3)	intron (NM_001033156, intron 1 of 3)	1317.0	NM_001033156	70611.0	Mm.311026	NM_001033156	ENSMUSG00000035329	Fbxo33	5730501N20Rik|AI642135	F-box protein 33	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152616235-4	chr1	152616148	152616348	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346119, intron 2 of 17)	(TTTTG)n|Simple_repeat|Simple_repeat	8969.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-95547593-2	chr10	95547493	95547693	+	577.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_027722, exon 5 of 5)	3' UTR (NM_027722, exon 5 of 5)	11728.0	NR_037212	100526463.0		NR_037212	ENSMUSG00000092867	Mir3058	mir-3058|mmu-mir-3058	microRNA 3058	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101380596-2	chr15	101380496	101380696	+	600.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10471.0	NM_028770	74127.0	Mm.440055	NM_028770	ENSMUSG00000037185	Krt80	1200016G03Rik|2310041I20Rik|Kb20	keratin 80	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-76073283-4	chr14	76073158	76073358	+	844.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	37557.0	NM_026177	67467.0	Mm.260767	NM_026177	ENSMUSG00000022008	Gpalpp1	1200011I18Rik|Kiaa1704	GPALPP motifs containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-56088696-2	chr1	56088596	56088796	+	860.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	69718.0	NR_126076	69356.0	Mm.393775	NR_126075	ENSMUSG00000100372	1700003I22Rik	-	RIKEN cDNA 1700003I22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-8664134-12	chr11	8664025	8664225	+	970.4027710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 1 of 30)	CpG	410.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-110932006-4	chr10	110931904	110932104	+	683.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007792, exon 2 of 6)	exon (NM_007792, exon 2 of 6)	11828.0	NM_007792	13008.0	Mm.2020	NM_007792	ENSMUSG00000020186	Csrp2	AW551867|Crp2|SmLim	cysteine and glycine-rich protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-57329352-2	chr17	57329252	57329452	+	700.666687	f1_balb.idr|f1_c57bl6.idr	TTS (NM_011691)	TTS (NM_011691)	-29334.0	NM_001355723	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-85574674-4	chr11	85574547	85574747	+	907.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138681, intron 21 of 25)	intron (NM_138681, intron 21 of 25)	145097.0	NR_045875	71489.0	Mm.442482	NR_045875	ENSMUSG00000086199	Bcas3os1	8430403D17Rik	breast carcinoma amplified sequence 3, opposite strand 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-7873885-4	chr17	7873770	7873970	+	877.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52130.0	NM_145968	72536.0	Mm.119680	NM_145968	ENSMUSG00000033450	Tagap	2610315E15Rik|TRD|Tcd-1|Tcd1|Tcd1a|tcs-1|tcs1	T cell activation Rho GTPase activating protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-23753112-6	chr18	23752973	23753173	+	959.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_126066)	promoter-TSS (NR_126066)	-652.0	NM_001162941	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-155011470-1	chr2	155011370	155011570	+	597.5	f0_balb.idr	Intergenic	MTD|LTR|ERVL-MaLR	-2100.0	NM_015770	50518.0	Mm.315593	NM_015770	ENSMUSG00000027596	a	A<y>|ASIP|ASP|As	nonagouti	protein-coding	0.408852860439501	1.24913622103989	1.28756660275633	0.422227214958758	1.15560668795153	0.442594967937059	0.432415961089777	0.617339735278488	-1.00281653872938	0.573435050163277	0.964496317550327
Merged-chr5-139405694-4	chr5	139405580	139405780	+	997.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177000)	promoter-TSS (NM_177000)	-707.0	NM_177000	319772.0	Mm.440271	NM_177000	ENSMUSG00000044092	C130050O18Rik	-	RIKEN cDNA C130050O18 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-95086892-3	chr10	95086797	95086997	+	829.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58928.0	NR_131146	628062.0		NR_131146	ENSMUSG00000112481	Gm29684	-	predicted gene, 29684	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-83607586-3	chr15	83607470	83607670	+	674.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271473, intron 19 of 19)	intron (NM_001271473, intron 19 of 19)	-12413.0	NM_183017	223723.0	Mm.46778	NM_183017	ENSMUSG00000016757	Ttll12	BC055368|D430005B17	tubulin tyrosine ligase-like family, member 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-29244177-3	chr6	29244097	29244297	+	848.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2c|LINE|L2	-27833.0	NM_001302934	23917.0	Mm.260707	NM_011829	ENSMUSG00000003500	Impdh1	B930086D20Rik|IMPDH-I	inosine monophosphate dehydrogenase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-57187430-2	chr17	57187330	57187530	+	673.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	6751.0	NM_019418	50930.0	Mm.483369	NM_019418	ENSMUSG00000005824	Tnfsf14	HVEM-L|HVEML|LIGHT|LTg|Ly113|Tnlg1d	tumor necrosis factor (ligand) superfamily, member 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-109147716-3	chr4	109147595	109147795	+	862.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346502, intron 3 of 23)	intron (NM_001346502, intron 3 of 23)	-9782.0	NM_001355190	100273.0	Mm.366315	NM_133885	ENSMUSG00000028559	Osbpl9	2600011I06Rik|AU015843|Orp-9	oxysterol binding protein-like 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-65429125-1	chr18	65429025	65429225	+	547.0	f1_balb.idr	intron (NR_105742, intron 3 of 6)	PB1D10|SINE|Alu	-1872.0	NM_172833	240354.0	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-97309076-2	chr7	97308976	97309176	+	657.666626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_010248)	TTS (NM_010248)	16888.0	NM_001177412	244144.0	Mm.297541	NM_001177412	ENSMUSG00000035713	Usp35	Gm1088|Gm493	ubiquitin specific peptidase 35	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-6557108-2	chr2	6557008	6557208	+	668.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110231, intron 13 of 15)	intron (NM_001110231, intron 13 of 15)	164554.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166826412-2	chr2	166826312	166826512	+	990.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085495, intron 1 of 38)	MIRb|SINE|MIR	20831.0	NM_001085495	99371.0	Mm.297192	NM_001085495	ENSMUSG00000074582	Arfgef2	AI463430|AW493672|BIG2|E230011G24Rik	ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-45267196-5	chr9	45267163	45267363	+	957.511108	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_106054)	promoter-TSS (NR_106054)	-556.0	NR_106054	102466803.0		NR_106054	ENSMUSG00000098361	Mir7086	Gm27643|mmu-mir-7086	microRNA 7086	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-119320550-4	chr4	119320448	119320648	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028677)	promoter-TSS (NM_028677)	-25.0	NM_001110130	66101.0	Mm.304080	NM_028677	ENSMUSG00000060288	Ppih	1100001J08Rik|2010111B15Rik|4833408F11Rik|AI464484|CYP-20|CYPH|D4Wsu43e	peptidyl prolyl isomerase H	protein-coding	6.78707361195925	6.7640710645497	6.4631340512598	6.05643467083692	6.45691326957904	5.91991344829747	6.45518827881162	6.187616554744	-0.291635211269465	0.202734797800538	0.688808411556785
Merged-chr2-52897239-4	chr2	52897179	52897379	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	39411.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-29770025-2	chr2	29769925	29770125	+	558.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8497.0	NM_001177392	433416.0	Mm.330112	NM_001034887	ENSMUSG00000075425	Gm13547	-	predicted gene 13547	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94639460-3	chr10	94639358	94639558	+	787.211121	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	49155.0	NR_015524	67723.0	Mm.116284	NR_015524		Cep83os	4932415G12Rik|Ccdc41os1	centrosomal protein 83, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-128798909-2	chr4	128798809	128799009	+	897.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081098, intron 1 of 8)	intron (NM_001081098, intron 1 of 8)	7203.0	NM_001081098	230761.0	Mm.22616	NM_001081098	ENSMUSG00000028799	Zfp362	-	zinc finger protein 362	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-32544950-2	chr17	32544850	32545050	+	758.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_024442, exon 7 of 13)	exon (NM_024442, exon 7 of 13)	8393.0	NM_001356303	70101.0	Mm.30504	NM_024442	ENSMUSG00000048440	Cyp4f16	2310021J05Rik|AI746515	cytochrome P450, family 4, subfamily f, polypeptide 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-142797866-3	chr5	142797750	142797950	+	811.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178242, intron 2 of 15)	intron (NM_178242, intron 2 of 15)	19537.0	NM_178242	231861.0	Mm.354649	NM_178242	ENSMUSG00000039477	Tnrc18	BC025631|EG381742|Zfp469	trinucleotide repeat containing 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-165736787-2	chr1	165736687	165736887	+	664.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L4_A_Mam|LINE|RTE-X	-26971.0	NR_149310	433375.0	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-16470505-3	chr5	16470405	16470605	+	886.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-82990.0	NM_001289460	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59046458-2	chr15	59046358	59046558	+	760.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144800, intron 3 of 14)	intron (NM_144800, intron 3 of 14)	35568.0	NM_001146180	211401.0	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-5868336-2	chr13	5868236	5868436	+	765.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011803, exon 4 of 4)	3' UTR (NM_011803, exon 4 of 4)	6847.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-115505138-4	chr6	115505025	115505225	+	976.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39579.0	NM_199033	381802.0	Mm.291208	NM_199033	ENSMUSG00000042389	Tsen2	AU067695	tRNA splicing endonuclease subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-69012803-4	chr8	69012725	69012925	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-75911.0	NM_007509	11966.0	Mm.249096	NM_007509	ENSMUSG00000006273	Atp6v1b2	AI194269|AI790362|Atp6b2|HO57|R74844	ATPase, H+ transporting, lysosomal V1 subunit B2	protein-coding	5.57651712039924	5.09206188564228	5.84683767701895	5.7766220899508	5.44682543240423	4.55880706670126	5.70030786699824	4.69811784911363	-0.475415173432453	0.149910517482492	0.602084263140464
Merged-chr2-144166476-2	chr2	144166376	144166576	+	704.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22814.0	NR_136884	433481.0	Mm.330630	NR_136884	ENSMUSG00000074758	Gm5535	EG433481	predicted gene 5535	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-36713349-4	chr5	36713246	36713446	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17325.0	NM_001081232	320661.0	Mm.26480	NM_177221	ENSMUSG00000029190	D5Ertd579e	9030221A05Rik|A930018H20Rik|Kiaa0232	DNA segment, Chr 5, ERATO Doi 579, expressed	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-132865302-3	chr3	132865204	132865404	+	906.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_102297, intron 1 of 3)	intron (NR_102297, intron 1 of 3)	13292.0	NR_102297	101243624.0	Mm.306256	NR_102297	ENSMUSG00000106230	Gm29811	-	predicted gene, 29811	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-149020060-2	chr3	149019960	149020160	+	968.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65425.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-39489949-4	chr18	39489851	39490051	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2706.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-140204043-1	chr1	140203943	140204143	+	574.0	f0_balb.idr	Intergenic	Intergenic	-20632.0	NM_009888	12628.0	Mm.8655	NM_009888	ENSMUSG00000026365	Cfh	Mud-1|NOM|Sas-1|Sas1	complement component factor h	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-94504401-4	chr16	94504327	94504527	+	798.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007834, intron 4 of 7)	intron (NM_007834, intron 4 of 7)	22202.0	NM_007834	13185.0	Mm.7472	NM_007834	ENSMUSG00000022898	Dscr3	AW538125|Dcra	DSCR3 arrestin fold containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-41602794-3	chr10	41602673	41602873	+	706.466675	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358562, intron 29 of 47)	intron (NM_001358562, intron 29 of 47)	34757.0	NR_045341	70538.0	Mm.399807	NR_045341	ENSMUSG00000091370	5730435O14Rik	-	RIKEN cDNA 5730435O14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94476932-4	chr10	94476833	94477033	+	804.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 2 of 4)	RLTR20D|LTR|ERVK	-37924.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72658164-2	chr6	72658064	72658264	+	550.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001079822, intron 3 of 12)	B2_Mm2|SINE|B2	28333.0	NR_040421	100038714.0	Mm.321330	NR_040421		Gm15401	-	predicted gene 15401	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-59406175-1	chr4	59406075	59406275	+	551.0	f0_balb.idr	intron (NM_001163288, intron 5 of 16)	intron (NM_001163288, intron 5 of 16)	32458.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99452529-2	chr7	99452417	99452617	+	713.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_201352, intron 11 of 17)	intron (NM_201352, intron 11 of 17)	-13487.0	NM_028145	72184.0	Mm.153585	NM_028145	ENSMUSG00000035298	Klhl35	2810406K13Rik	kelch-like 35	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-119322359-4	chr9	119322288	119322488	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045693)	promoter-TSS (NR_045693)	39.0	NR_045693	108737.0	Mm.293565	NM_133985	ENSMUSG00000036737	Oxsr1	2210022N24Rik|2810422B09Rik|AI462649|AW209236|Osr1|mKIAA1101	oxidative-stress responsive 1	protein-coding	4.04469510572255	4.86757823216357	5.09334786549912	4.0790482934559	4.32754004603694	4.71212963222075	5.09444156653456	4.09990771880431	0.017433357803514	0.966856478396758	0.998431161219273
Merged-chr1-186546560-2	chr1	186546460	186546660	+	602.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_131124, intron 1 of 2)	intron (NR_131124, intron 1 of 2)	12121.0	NR_131124	320449.0	Mm.404477	NR_131124	ENSMUSG00000103690	A730004F24Rik	-	RIKEN cDNA A730004F24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-80168788-4	chr11	80168730	80168930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172133, intron 6 of 10)	intron (NM_172133, intron 6 of 10)	14668.0	NM_172133	216991.0	Mm.341520	NM_172133	ENSMUSG00000020709	Adap2	Centa2	ArfGAP with dual PH domains 2	protein-coding	3.43553313946516	3.18648558898667	2.85179906679603	3.77916063571294	2.86021477759577	3.31219979276031	2.42427653814094	3.56645838337479	-0.410004048332123	0.51246744370943	0.945451213166439
Merged-chr8-88361485-3	chr8	88361429	88361629	+	776.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr	exon (NM_012047, exon 2 of 17)	exon (NM_012047, exon 2 of 17)	662.0	NM_012047	26992.0	Mm.5400	NM_012047	ENSMUSG00000031660	Brd7	BP75|CELTIX1|Ptpn13ip	bromodomain containing 7	protein-coding	3.31273313522714	1.94315255272432	2.60591119697427	2.53029715887716	3.39538682943281	3.44536192463361	2.62689287242635	3.30680037765561	0.924221575782613	0.187330211548988	0.664995221281668
Merged-chr18-80417823-1	chr18	80417723	80417923	+	652.0	f1_balb.idr	intron (NM_026295, intron 12 of 12)	intron (NM_026295, intron 12 of 12)	51844.0	NM_026295	67655.0	Mm.312893	NM_026295	ENSMUSG00000033323	Ctdp1	4930563P03Rik|AW553592	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1	protein-coding	0.653429434980644	0.285594591697279	0.278420011259556	1.0941146469067	0.548189948751702	0.287207823028852	0.280004988105715	0.830770648988598	-0.70259343713092	0.711499266253179	1
Merged-chr11-121041402-4	chr11	121041287	121041487	+	727.950012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1909.0	NM_009854	12516.0	Mm.4100	NM_009854	ENSMUSG00000025163	Cd7	-	CD7 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-153953964-4	chr1	153953875	153954075	+	835.729187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A|LTR|ERVL-MaLR	54046.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-45945612-3	chr13	45945492	45945692	+	776.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199304, intron 2 of 6)	intron (NM_001199304, intron 2 of 6)	19399.0	NM_001199304	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-24215111-4	chr18	24214999	24215199	+	927.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361200, intron 1 of 12)	L1MDa|LINE|L1	9105.0	NM_001160404	14423.0	Mm.30249	NM_013814	ENSMUSG00000000420	Galnt1	-	polypeptide N-acetylgalactosaminyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-148161265-2	chr4	148161165	148161365	+	694.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_176848, intron 1 of 5)	intron (NM_176848, intron 1 of 5)	597.0	NM_176848	230904.0	Mm.262287	NM_176848	ENSMUSG00000041556	Fbxo2	FBG1|FBX2|Fbs1|Fbs2|NFB42|Prpl4	F-box protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-135470145-2	chr3	135470045	135470245	+	712.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15466.0	NM_027288	110173.0	Mm.280536	NM_027288	ENSMUSG00000028164	Manba	2410030O07Rik|B930014J03Rik|Bmn	mannosidase, beta A, lysosomal	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-116704013-4	chr4	116703913	116704113	+	778.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025962, intron 3 of 3)	B3|SINE|B2	4372.0	NM_025962	67096.0	Mm.252785	NM_025962	ENSMUSG00000028690	Mmachc	1810037K07Rik|CblC	methylmalonic aciduria cblC type, with homocystinuria	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-37622143-4	chr1	37622019	37622219	+	897.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028096, intron 7 of 9)	intron (NM_028096, intron 7 of 9)	-81103.0	NM_173870	269181.0	Mm.25861	NM_173870	ENSMUSG00000026110	Mgat4a	9530018I07Rik|GnT-IVa|glcNAc-T-IVa	mannoside acetylglucosaminyltransferase 4, isoenzyme A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-86686886-2	chr18	86686786	86686986	+	547.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2B2|LINE|L1	-24175.0	NM_001302356	12405.0	Mm.70775	NM_172633	ENSMUSG00000024647	Cbln2	6330593N19Rik|A730004O05	cerebellin 2 precursor protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-68519559-4	chr11	68519455	68519655	+	981.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004435, intron 1 of 19)	intron (NM_001004435, intron 1 of 19)	16536.0	NR_126154	104709.0	Mm.234573	NM_001004435	ENSMUSG00000046207	Pik3r6	BB220380|p84|p84 PIKAP|p87(PIKAP)|p87PIKAP	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-16119605-4	chr4	16119503	16119703	+	999.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44040.0	NM_138952	192656.0	Mm.112765	NM_138952	ENSMUSG00000041135	Ripk2	2210420D18Rik|CARD3|CARDIAK|CCK|D4Bwg0615e|RICK|RIP2	receptor (TNFRSF)-interacting serine-threonine kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-75704209-4	chr15	75704102	75704302	+	994.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008164)	promoter-TSS (NM_008164)	-86.0	NM_001163465	14787.0	Mm.57052	NM_008164	ENSMUSG00000022580	Rhpn1	BB023497|Grbp|Rhophilin|mKIAA1929	rhophilin, Rho GTPase binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-22035732-4	chr13	22035621	22035821	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175665)	promoter-TSS (NM_175665)	-78.0	NM_175659	319168.0	Mm.250564	NM_175659	ENSMUSG00000069302	Hist1h2ah	-	histone cluster 1, H2ah	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-150527-1	chr1	150427	150627	+	592.0	f1_c57bl6.idr	Intergenic	Intergenic	3520971.0	NM_001011874	497097.0	Mm.454496	NM_001011874	ENSMUSG00000051951	Xkr4	AY534250|Gm210|XRG4|mKIAA1889	X-linked Kx blood group related 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-134091677-2	chr1	134091577	134091777	+	864.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12522.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118810167-2	chr9	118810067	118810267	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 4 of 13)	intron (NM_001113514, intron 4 of 13)	98475.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-40977812-4	chr13	40977698	40977898	+	830.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155347, intron 1 of 4)	intron (NR_155347, intron 1 of 4)	-23212.0	NM_026550	68083.0	Mm.24789	NM_026550	ENSMUSG00000038683	Pak1ip1	5830431I15Rik|5930415H02Rik|AA419825|AI314040|AW556169|Gdpd1|PIP1	PAK1 interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69097627-4	chr11	69097525	69097725	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1324.0	NM_011065	18626.0	Mm.7373	NM_011065	ENSMUSG00000020893	Per1	Hftm|Per|m-rigui|mPer1	period circadian clock 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21718225-2	chr9	21718125	21718325	+	895.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-5351.0	NM_001252658	16835.0	Mm.3213	NM_010700	ENSMUSG00000032193	Ldlr	Hlb301	low density lipoprotein receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129379330-1	chr2	129379230	129379430	+	579.0	f1_balb.idr	Intergenic	Intergenic	-8191.0	NM_008361	16176.0	Mm.222830	NM_008361	ENSMUSG00000027398	Il1b	IL-1beta|Il-1b	interleukin 1 beta	protein-coding	2.27110566945515	2.80145626414939	1.27032408706929	2.09125992407204	2.00044167647031	2.10970759008029	2.03935956663989	1.67220187486068	-0.662773735782241	0.497280825357732	0.936897994490085
Merged-chr19-19410806-2	chr19	19410706	19410906	+	579.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	-299610.0	NM_001043354	225998.0	Mm.234641	NM_146095	ENSMUSG00000036192	Rorb	Nr1f2|RZR-beta|RZRB|Rorbeta|hstp	RAR-related orphan receptor beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-9011802-1	chr13	9011702	9011902	+	755.666687	f0_balb.idr	Intergenic	Intergenic	-15790.0	NM_027000	69237.0	Mm.41800	NM_027000	ENSMUSG00000021149	Gtpbp4	2610028C09Rik|Crfg|Gtpbp3|NGB|Nog1	GTP binding protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-102454258-2	chr15	102454158	102454358	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_144547, exon 11 of 11)	exon (NM_144547, exon 11 of 11)	-4912.0	NM_001170911	66151.0	Mm.393955	NM_025385	ENSMUSG00000023048	Prr13	1110020C13Rik|2010324E22Rik	proline rich 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-38190694-4	chr18	38190584	38190784	+	969.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19078.0	NM_029357	75599.0	Mm.36560	NM_029357	ENSMUSG00000051375	Pcdh1	2010005A06Rik|AI585920	protocadherin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-76835851-3	chr10	76835715	76835915	+	812.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347216, intron 2 of 15)	intron (NM_001347216, intron 2 of 15)	-13003.0	NR_152849	59093.0	Mm.272803	NM_021568	ENSMUSG00000001120	Pcbp3	AlphaCP-3	poly(rC) binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-108277116-3	chr6	108276990	108277190	+	964.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 4 of 61)	intron (NM_010585, intron 4 of 61)	63994.0	NM_010585	16438.0	Mm.227912	NM_010585	ENSMUSG00000030102	Itpr1	D6Pas2|Gm10429|IP3R 1|IP3R1|InsP3R|Ip3r|Itpr-1|P400|Pcp-1|Pcp1|insP3R1|opt|wblo	inositol 1,4,5-trisphosphate receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-61919304-2	chr8	61919204	61919404	+	935.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8783.0	NM_001293783	234311.0	Mm.275233	NM_144928	ENSMUSG00000037921	Ddx60	9830118M07	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60	protein-coding	0.713354966388273	0.0468883560632746	0.0402421748056979	0.0350856292890912	0.945666173851399	0.260663867834181	0.0417116003050061	0.0359883293414948	0.823605005638019	0.706252585030336	1
Merged-chr8-123518833-4	chr8	123518720	123518920	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018855)	promoter-TSS (NM_018855)	-15.0	NM_018855	104346.0	Mm.117265	NM_018855	ENSMUSG00000040220	Gas8	Gas11	growth arrest specific 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-60923283-4	chr2	60923176	60923376	+	961.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	39928.0	NM_020296	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-38227777-2	chr3	38227677	38227877	+	593.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19658.0	NR_040541	71342.0	Mm.410782	NR_040541	ENSMUSG00000106002	5430434I15Rik	-	RIKEN cDNA 5430434I15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-48873748-6	chr13	48873624	48873824	+	707.611084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2839.0	NM_011078	18676.0	Mm.486213	NM_011078	ENSMUSG00000038025	Phf2	GRC5	PHD finger protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-16551119-3	chr2	16551015	16551215	+	854.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026162, intron 3 of 13)	intron (NM_026162, intron 3 of 13)	194811.0	NM_026162	67448.0	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-3752523-4	chr2	3752425	3752625	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025626, intron 1 of 3)	intron (NM_025626, intron 1 of 3)	39067.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-49214639-3	chr13	49214575	49214775	+	915.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026738, intron 1 of 5)	intron (NM_026738, intron 1 of 5)	1351.0	NM_026738	68480.0	Mm.3336	NM_026738	ENSMUSG00000037960	Card19	1110007C09Rik|AI851695|Bincard	caspase recruitment domain family, member 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-25292332-3	chr10	25292271	25292471	+	877.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018747, intron 1 of 7)	intron (NM_018747, intron 1 of 7)	6792.0	NM_018747	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	1.00726332108677	1.49368492897283	1.00300852940321	0.492882486238223	0.910435612734441	0.512697904619995	0.502782735609232	0.681096019112308	-2.0091604837258	0.221135154787232	1
Merged-chr18-39649953-2	chr18	39649853	39650053	+	812.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-123544.0	NM_011033	18459.0	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106627923-4	chr11	106627843	106628043	+	857.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-15013.0	NM_198292	21763.0	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-40457635-4	chr9	40457532	40457732	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357617, intron 1 of 20)	intron (NM_001357617, intron 1 of 20)	-1868.0	NM_172768	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	3.4353667962286	3.34979867953004	3.57440061929742	2.54010171113765	3.74364109167606	3.98948891938319	3.16050831197617	2.83360299287133	0.360967868432722	0.548306710331535	0.958211390380525
Merged-chr3-86774707-4	chr3	86774575	86774775	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077688, intron 54 of 54)	Tigger6a|DNA|TcMar-Tigger	146209.0	NM_001195499	70762.0	Mm.44490	NM_027539	ENSMUSG00000028078	Dclk2	6330415M09Rik|AU044875|CL2|CLICK2|Click-II|Dcamkl2	doublecortin-like kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80505728-2	chr10	80505628	80505828	+	887.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_139226, intron 1 of 1)	intron (NM_139226, intron 1 of 1)	10822.0	NM_139226	246086.0	Mm.250572	NM_139226	ENSMUSG00000045518	Onecut3	OC-3|Oc3	one cut domain, family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56266075-4	chr17	56265985	56266185	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	9292.0	NM_010192	14154.0	Mm.290813	NM_010192	ENSMUSG00000043683	Fem1a	AW611390|Fem1aa	feminization 1 homolog a (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-38228027-4	chr7	38227930	38228130	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024413)	promoter-TSS (NM_024413)	-36.0	NM_024413	72287.0	Mm.333798	NM_024413	ENSMUSG00000074170	Plekhf1	1810013P09Rik|APPD|LAPF|PHAFIN1|ZFYVE15	pleckstrin homology domain containing, family F (with FYVE domain) member 1	protein-coding	4.10208548939751	4.40389583066349	4.95971984693619	3.89812330499631	4.58997133775123	3.85492567814138	4.04089513061705	4.42865268471092	-0.16811520327046	0.697864127732013	0.998087997318924
Merged-chr1-64615880-6	chr1	64615826	64616026	+	822.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025964, intron 1 of 2)	intron (NM_025964, intron 1 of 2)	1242.0	NM_025964	67099.0	Mm.46394	NM_025964	ENSMUSG00000025956	Mettl21a	2310038H17Rik|AI464204|Fam119a	methyltransferase like 21A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-109413783-4	chr11	109413665	109413865	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12181.0	NM_025275	13929.0	Mm.211850	NM_025275	ENSMUSG00000020610	Amz2	AA408420|ESTM12|X83328	archaelysin family metallopeptidase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-12317576-4	chr2	12317473	12317673	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15629.0	NM_001001309	241226.0	Mm.329997	NM_001001309	ENSMUSG00000026768	Itga8	AI447669	integrin alpha 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134533077-1	chr6	134532977	134533177	+	809.0	f1_c57bl6.idr	intron (NM_008514, intron 2 of 22)	intron (NM_008514, intron 2 of 22)	33836.0	NM_008514	16974.0	Mm.321990	NM_008514	ENSMUSG00000030201	Lrp6	C030016K15Rik|Cd|Gw|ska26|ska<m26Jus>|skax26	low density lipoprotein receptor-related protein 6	protein-coding	3.12212133452382	2.9303975730574	3.37666650668781	1.46053866510208	2.30527866336066	2.4440917895838	2.63293772130044	2.76474808238433	-0.6794772222275	0.401219461052144	0.886416233802533
Merged-chr8-117298383-4	chr8	117298277	117298477	+	978.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	41358.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-87212507-4	chr11	87212403	87212603	+	853.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197987, intron 22 of 23)	intron (NM_197987, intron 22 of 23)	85428.0	NM_197987	68729.0	Mm.17436	NM_197987	ENSMUSG00000018548	Trim37	1110032A10Rik|2810004E07Rik|AI848587|AU043018|MUL|TEF3|mKIAA0898	tripartite motif-containing 37	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-79365462-1	chr15	79365362	79365562	+	1000.0	f1_balb.idr	exon (NM_001253817, exon 8 of 9)	exon (NM_001253817, exon 8 of 9)	9838.0	NR_035464	100316695.0		NR_035464	ENSMUSG00000088901	Mir1943	mir-1943|mmu-mir-1943	microRNA 1943	ncRNA	1.54161211428832	2.05036051678537	1.03326173831548	2.0269425213337	0.977525318884415	2.19314535001434	2.7788997303453	1.26500103510651	0.73413055037761	0.533160710156513	0.952082138848632
Merged-chr10-67536179-4	chr10	67536083	67536283	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1686.0	NM_010118	13654.0	Mm.290421	NM_010118	ENSMUSG00000037868	Egr2	Egr-2|Krox-20|Krox20|NGF1-B|Zfp-25|Zfp-6	early growth response 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-19580740-4	chr2	19580634	19580834	+	946.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	-26824.0	NM_027600	70909.0	Mm.158488	NM_027600	ENSMUSG00000026734	4921504E06Rik	4921522E24Rik	RIKEN cDNA 4921504E06 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-70728930-4	chr17	70728855	70729055	+	936.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347411, intron 9 of 14)	(CA)n|Simple_repeat|Simple_repeat	117822.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	1.4747381592252	3.27425247020003	1.61360684792151	2.42680161930117	3.00050025401807	2.74394942481867	3.44550257173427	1.29193024515238	0.764005942662007	0.423838610184786	0.900955031692486
Merged-chr3-131701142-4	chr3	131701048	131701248	+	831.575012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	135116.0	NM_001289477	23971.0	Mm.244912	NM_011863	ENSMUSG00000028032	Papss1	AI325286|Asapk|SK1	3'-phosphoadenosine 5'-phosphosulfate synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-20846657-2	chr14	20846557	20846757	+	920.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB8|LINE|L1	9995.0	NM_008873	18792.0	Mm.4183	NM_008873	ENSMUSG00000021822	Plau	u-PA|uPA	plasminogen activator, urokinase	protein-coding	0.965940413642268	0.399802879215354	-0.177656335371046	-0.183073685174064	-0.190822083232796	-0.169158686267052	-0.176117364171449	-0.182123434540419	-4.13966020177615	0.0761538554000623	1
Merged-chr13-31507021-3	chr13	31506914	31507114	+	916.8777470000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51156.0	NM_008239	15220.0	Mm.44235	NM_008239	ENSMUSG00000038415	Foxq1	HFH-1|Hfh1|Hfh1l|sa	forkhead box Q1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81184013-2	chr10	81183913	81184113	+	776.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007828)	promoter-TSS (NM_007828)	95.0	NM_007828	13144.0	Mm.10294	NM_007828	ENSMUSG00000034974	Dapk3	ZIPK|dlk	death-associated protein kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-33436454-4	chr2	33436329	33436529	+	999.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5105.0	NM_001276332	241311.0	Mm.296512	NM_001085507	ENSMUSG00000068966	Zbtb34	Gm349|mKIAA1993	zinc finger and BTB domain containing 34	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-45313485-4	chr9	45313369	45313569	+	652.25	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5631.0	NM_001013373	214531.0	Mm.394987	NM_001013373	ENSMUSG00000037129	Tmprss13	BC010843|Tpmrss13	transmembrane protease, serine 13	protein-coding	-1.18378942727406	-1.15669478905697	-0.457913181653105	-1.17806440097404	-1.18323730008524	-1.15415234459186	-1.16577117532349	-1.17633933179771	-2.81844548480871	0.412768592413622	1
Merged-chr3-9341733-3	chr3	9341647	9341847	+	674.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61331.0	NR_015499	320088.0	Mm.212908	NR_015499	ENSMUSG00000097365	C030034L19Rik	A130044O20Rik	RIKEN cDNA C030034L19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-84090641-2	chr17	84090541	84090741	+	809.75	f1_balb.idr|f1_c57bl6.idr	TTS (NR_045458)	TTS (NR_045458)	11981.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-136149743-8	chr4	136149633	136149833	+	889.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	5911.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100318897-2	chr11	100318797	100318997	+	876.214294	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1052.0	NM_011508	20918.0	Mm.13886	NM_011508	ENSMUSG00000035530	Eif1	Sui1-rs1	eukaryotic translation initiation factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-139741937-3	chr4	139741848	139742048	+	973.7222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011039, intron 8 of 8)	MTD|LTR|ERVL-MaLR	88410.0	NM_031873	83770.0	Mm.190612	NM_031873	ENSMUSG00000028738	Tas1r2	Gpr71|T1r2|TR2	taste receptor, type 1, member 2	protein-coding	5.16643621071092	4.85369621914828	5.58743225915299	5.25933359571915	1.45536726624551	3.50184551825644	1.67518322777586	2.7167781857243	-3.6569163880916	0.000522860576232874	0.0115885736335752
Merged-chr7-13036137-2	chr7	13036037	13036237	+	713.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145578, intron 4 of 5)	intron (NM_145578, intron 4 of 5)	-1360.0	NM_001360731	68953.0	Mm.295670	NM_026885	ENSMUSG00000033916	Chmp2a	1500016L11Rik|mVps2	charged multivesicular body protein 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-5577953-2	chr15	5577853	5578053	+	680.833313	f1_balb.idr|f1_c57bl6.idr	intron (NR_045274, intron 2 of 4)	MLT1A|LTR|ERVL-MaLR	81635.0	NR_045274	71432.0	Mm.291087	NR_045274	ENSMUSG00000110018	5430437J10Rik	-	RIKEN cDNA 5430437J10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-38354327-2	chr2	38354227	38354427	+	598.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290646, intron 2 of 4)	intron (NM_001290646, intron 2 of 4)	3019.0	NM_010710	16870.0	Mm.142856	NM_010710	ENSMUSG00000000247	Lhx2	LH2A|Lh-2|Lim2|ap|apterous	LIM homeobox protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107602644-1	chr9	107602544	107602744	+	782.0	f1_c57bl6.idr	intron (NM_001042779, intron 9 of 19)	L2b|LINE|L2	2758.0	NM_009153	20347.0	Mm.4083	NM_009153	ENSMUSG00000057969	Sema3b	SemA|Semaa|sema5|semaV	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-132691228-2	chr7	132691128	132691328	+	592.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029609, intron 6 of 6)	Lx9|LINE|L1	80585.0	NM_029609	76429.0	Mm.276721	NM_029609	ENSMUSG00000030946	Lhpp	2310007H09Rik	phospholysine phosphohistidine inorganic pyrophosphate phosphatase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76537186-2	chr15	76537086	76537286	+	633.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_013909, exon 5 of 9)	exon (NM_013909, exon 5 of 9)	1560.0	NM_013909	30840.0	Mm.275279	NM_013909	ENSMUSG00000022559	Fbxl6	AU021795|Fbl6	F-box and leucine-rich repeat protein 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-41352678-2	chr4	41352578	41352778	+	675.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001355508, exon 1 of 7)	5' UTR (NM_001355508, exon 1 of 7)	715.0	NM_001355508	67123.0	Mm.289795	NM_023305	ENSMUSG00000028437	Ubap1	2700092A01Rik|NAG20|UBAP-1|Ubap	ubiquitin-associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-73168789-4	chr14	73168705	73168905	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134083, intron 10 of 14)	intron (NM_134083, intron 10 of 14)	26020.0	NR_033185	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-98927221-2	chr13	98927121	98927321	+	851.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178716)	promoter-TSS (NM_178716)	-837.0	NM_178716	238799.0	Mm.173286	NM_178716	ENSMUSG00000009470	Tnpo1	AU021749|D13Ertd688e|IPO2|Kpnb2|MIP|MIP1|TRN	transportin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-95662836-2	chr1	95662736	95662936	+	634.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159745, intron 1 of 3)	intron (NM_001159745, intron 1 of 3)	4758.0	NM_009183	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-58254779-2	chr10	58254679	58254879	+	552.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027375)	promoter-TSS (NM_027375)	-747.0	NM_027375	70297.0	Mm.25531	NM_027375	ENSMUSG00000038039	Gcc2	0610043A03Rik|2210420P05Rik|2600014C01Rik|AW112121|mKIAA0336	GRIP and coiled-coil domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-83169876-3	chr15	83169788	83169988	+	886.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029787, intron 1 of 8)	intron (NM_029787, intron 1 of 8)	2320.0	NM_029787	109754.0	Mm.22560	NM_029787	ENSMUSG00000018042	Cyb5r3	0610016L08Rik|2500002N19Rik|C85115|Dia-1|Dia1|WU:AL591952.1-001|WU:AL591952.1-002|WU:AL591952.1-003|WU:Cyb5r3	cytochrome b5 reductase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-22048304-3	chr8	22048202	22048402	+	654.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007511, intron 1 of 20)	intron (NM_007511, intron 1 of 20)	11772.0	NM_007511	11979.0	Mm.87854	NM_007511	ENSMUSG00000006567	Atp7b	Atp7a|WND|tx	ATPase, Cu++ transporting, beta polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-25904903-3	chr18	25904814	25905014	+	777.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-150757.0	NM_001362334	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-15300325-4	chr10	15300215	15300415	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-491462.0	NR_131087	77538.0	Mm.128235	NR_131087	ENSMUSG00000112227	C330004P14Rik	-	RIKEN cDNA C330004P14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-84842674-4	chr15	84842572	84842772	+	715.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356573, intron 2 of 12)	intron (NM_001356573, intron 2 of 12)	12427.0	NM_001356573	271305.0	Mm.101022	NM_001081166	ENSMUSG00000016624	Phf21b	A730032D07Rik	PHD finger protein 21B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-32683384-3	chr14	32683315	32683515	+	928.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195097, intron 1 of 3)	intron (NM_001195097, intron 1 of 3)	1857.0	NM_001195097	100504518.0	Mm.318319	NM_001195097	ENSMUSG00000071540	3425401B19Rik	Cefip	RIKEN cDNA 3425401B19 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-69823698-4	chr14	69823566	69823766	+	702.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16741.0	NM_028560	73523.0	Mm.23509	NM_028526	ENSMUSG00000022085	Pebp4	PEBP-4	phosphatidylethanolamine binding protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-71415646-3	chr6	71415558	71415758	+	882.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355745, intron 2 of 9)	intron (NM_001355745, intron 2 of 9)	24979.0	NM_001355745	68477.0	Mm.28474	NM_024288	ENSMUSG00000002222	Rmnd5a	1110007A06Rik|AJ237586|AW125795|Gid2|MTA.D02.090	required for meiotic nuclear division 5 homolog A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-62935906-2	chr2	62935806	62936006	+	639.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133207, intron 2 of 15)	RMER6C|LTR|ERVK	248381.0	NM_133207	170738.0	Mm.242532	NM_133207	ENSMUSG00000059742	Kcnh7	9330137I11Rik|Kv11.3|erg3	potassium voltage-gated channel, subfamily H (eag-related), member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-5136425-2	chr12	5136325	5136525	+	833.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164493, intron 5 of 13)	intron (NM_001164493, intron 5 of 13)	219072.0	NM_001362349	320817.0	Mm.210966	NM_001099628	ENSMUSG00000052812	Atad2b	1110014E10Rik|BC032887|C79189|D530031C13Rik	ATPase family, AAA domain containing 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131246053-4	chr1	131245954	131246154	+	848.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001313731)	promoter-TSS (NM_001313731)	-876.0	NM_018750	54354.0	Mm.248291	NM_018750	ENSMUSG00000026430	Rassf5	1300019G20Rik|Maxp1|Nore1|Nore1A|Nore1B|Rapl	Ras association (RalGDS/AF-6) domain family member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5885743-3	chr17	5885689	5885889	+	768.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025664, intron 1 of 17)	intron (NM_025664, intron 1 of 17)	44409.0	NM_025664	66616.0	Mm.89515	NM_025664	ENSMUSG00000002365	Snx9	2700073N08Rik|SDP1|SH3PX1	sorting nexin 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-118892717-3	chr10	118892613	118892813	+	796.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23810.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-60826379-2	chr15	60826279	60826479	+	545.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_030696, intron 1 of 2)	intron (NR_030696, intron 1 of 2)	-1299.0	NM_001162926	399603.0	Mm.411968	NM_207269	ENSMUSG00000072568	Fam84b	BF642811|D330050I23Rik	family with sequence similarity 84, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-63864891-2	chr17	63864791	63864991	+	807.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037997, intron 1 of 18)	intron (NM_001037997, intron 1 of 18)	910.0	NM_001037997	14158.0	Mm.23039	NM_008000	ENSMUSG00000000127	Fer	AV082135|C330004K01Rik|Fert|Fert2	fer (fms/fps related) protein kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-32176271-2	chr16	32176171	32176371	+	734.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-3529.0	NM_001033539	328660.0	Mm.441006	NM_001033539	ENSMUSG00000075269	Bex6	B020003O03Rik	brain expressed family member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-83275375-2	chr17	83275275	83275475	+	705.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60092.0	NM_134117	106522.0	Mm.311974	NM_134117	ENSMUSG00000024247	Pkdcc	AI115348|AW548124|Adtk1|ESTM17|MAd1|Sgk493|Vlk|X83346	protein kinase domain containing, cytoplasmic	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-62073871-4	chr18	62073768	62073968	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	106113.0	NM_007420	11555.0	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180885871-3	chr1	180885772	180885972	+	703.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7236.0	NM_177099	320202.0	Mm.87078	NM_177099	ENSMUSG00000066652	Lefty2	6030463A22Rik|Ebaf|Lefta|Leftb|lefty-2|lefty-B	left-right determination factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-72261956-2	chr2	72261856	72262056	+	666.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23681.0	NM_023057	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100409165-2	chr11	100409065	100409265	+	778.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_176830, intron 7 of 7)	intron (NM_176830, intron 7 of 7)	5654.0	NM_176830	66180.0	Mm.4940	NM_176830	ENSMUSG00000006931	P3h4	1110036O03Rik|AI413214|Leprel4|Sc65	prolyl 3-hydroxylase family member 4 (non-enzymatic)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-105496347-3	chr4	105496245	105496445	+	830.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	338998.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	3.42756077640066	3.21688838500304	2.11963127648036	3.95357210061131	3.61381316970746	2.60277468549195	2.13774868709092	2.93410105546643	-0.637572502143299	0.377831301571361	0.871102989287699
Merged-chr6-91153089-2	chr6	91152989	91153189	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3726.0	NM_144919	232232.0	Mm.206218	NM_144919	ENSMUSG00000034245	Hdac11	-	histone deacetylase 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-54057191-4	chr6	54057054	54057254	+	910.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163640, intron 1 of 12)	MIR3|SINE|MIR	17222.0	NM_001163640	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19920617-4	chr7	19920500	19920700	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027514, intron 1 of 7)	intron (NM_027514, intron 1 of 7)	543.0	NM_027514	52118.0	Mm.227506	NM_027514	ENSMUSG00000040511	Pvr	3830421F03Rik|CD155|D7Ertd458e|HVED|PVS|Taa1|Tage4|mE4|necl-5	poliovirus receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-32833118-3	chr18	32832984	32833184	+	672.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045381, exon 2 of 5)	non-coding (NR_045381, exon 2 of 5)	-4141.0	NM_001110016	225348.0	Mm.38816	NM_144863	ENSMUSG00000038299	Wdr36	5730444A13Rik|Ta-wdrp	WD repeat domain 36	protein-coding	2.18369345011286	1.61985556463064	1.15195711193979	1.81629526396719	2.34182384628108	1.4280988564333	2.11867879291493	1.69131245396537	0.545275485824561	0.61236908254031	0.976329409858076
Merged-chr11-106305983-4	chr11	106305888	106306088	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4092.0	NM_008117	14599.0	Mm.343934	NM_008117	ENSMUSG00000020713	Gh	Gh1|Ghb1	growth hormone	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-80580952-10	chr2	80580868	80581068	+	936.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001355410, exon 1 of 32)	5' UTR (NM_001355410, exon 1 of 32)	214.0	NM_001290745	50884.0	Mm.25203	NM_016965	ENSMUSG00000027002	Nckap1	C79304|H19|Hem-2|Hem2|Nap1|mKIAA0587|mh19|p125Nap1	NCK-associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-58418714-2	chr15	58418614	58418814	+	645.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145959, intron 1 of 23)	intron (NM_145959, intron 1 of 23)	3246.0	NM_145959	210998.0	Mm.3224	NM_145959	ENSMUSG00000037119	Fam91a1	AV220772|BC033609|D15Ertd621e|SKIN|mKIAA0493	family with sequence similarity 91, member A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-23921961-4	chr1	23921828	23922028	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357395, intron 1 of 10)	CpG	453.0	NM_001357395	98366.0	Mm.329963	NM_028534	ENSMUSG00000026155	Smap1	1700056O10Rik|4921514B13Rik|4921525H11Rik|AI462175	small ArfGAP 1	protein-coding	2.25306906302262	2.77571609078705	3.11957879485727	2.70554350962767	2.38763506678568	1.81576877111435	3.21418477718212	2.09804167164933	-0.483367525283797	0.546187884835525	0.957038590534996
Merged-chr17-83217803-2	chr17	83217703	83217903	+	776.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_134117, intron 1 of 6)	intron (NM_134117, intron 1 of 6)	2520.0	NM_134117	106522.0	Mm.311974	NM_134117	ENSMUSG00000024247	Pkdcc	AI115348|AW548124|Adtk1|ESTM17|MAd1|Sgk493|Vlk|X83346	protein kinase domain containing, cytoplasmic	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-30729538-5	chr13	30729462	30729662	+	868.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19671.0	NM_001347508	16364.0	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131116104-4	chr1	131116021	131116221	+	879.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18278.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-42658897-2	chr17	42658797	42658997	+	815.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289499, intron 9 of 9)	B1_Mus1|SINE|Alu	33387.0	NM_001289501	78249.0	Mm.66217	NM_030067	ENSMUSG00000023918	Adgrf4	4632435A09Rik|AV239010|Gpr115	adhesion G protein-coupled receptor F4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-45847622-2	chr11	45847522	45847722	+	646.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4342.0	NM_001346760	216705.0	Mm.169673	NM_001045520	ENSMUSG00000006169	Clint1	AI642036|AW537616|C530049I24Rik|Enth|Epn4|F630206G17Rik|mKIAA0171	clathrin interactor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-96105788-3	chr6	96105681	96105881	+	859.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-7373.0	NM_182808	320265.0	Mm.489890	NM_182808	ENSMUSG00000059187	Fam19a1	C630007B19Rik|FAM19A1 TAFA-1|TAFA1|Tafa-1	family with sequence similarity 19, member A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-68254824-1	chr15	68254724	68254924	+	551.0	f1_c57bl6.idr	intron (NR_152182, intron 1 of 13)	RMER17D|LTR|ERVK	4032.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-86488625-2	chr6	86488525	86488725	+	573.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040293)	promoter-TSS (NR_040293)	-398.0	NR_040292	381792.0	Mm.333223	NR_040292	ENSMUSG00000101655	2310040G24Rik	-	RIKEN cDNA 2310040G24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-133544340-4	chr3	133544223	133544423	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346736)	promoter-TSS (NM_001346736)	67.0	NM_001040400	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-86397118-4	chr6	86397017	86397217	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025823)	promoter-TSS (NM_025823)	33.0	NM_001355687	66881.0	Mm.30849	NM_025823	ENSMUSG00000029998	Pcyox1	1200015P13Rik|AI115532|AI448340|PCL1|Pcly	prenylcysteine oxidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-50504318-4	chr17	50504228	50504428	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5219.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-21051116-3	chr19	21051023	21051223	+	767.200012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53587.0	NR_126458	75354.0	Mm.243873	NR_126458		4930554I06Rik	-	RIKEN cDNA 4930554I06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-58940661-1	chr2	58940561	58940761	+	932.5	f0_balb.idr	intron (NM_001362394, intron 9 of 13)	intron (NM_001362394, intron 9 of 13)	185477.0	NM_029692	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-74671038-2	chr15	74670938	74671138	+	807.166626	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001276684, exon 1 of 3)	3' UTR (NM_001276684, exon 1 of 3)	1532.0	NM_001276684	11838.0	Mm.491310	NM_018790	ENSMUSG00000022602	Arc	Arc3.1|C86064|arg3.1|mArc	activity regulated cytoskeletal-associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4419904-4	chr16	4419720	4419920	+	986.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001291910, exon 1 of 12)	5' UTR (NM_001291910, exon 1 of 12)	678.0	NM_001291910	11515.0	Mm.439750	NM_009624	ENSMUSG00000005580	Adcy9	AC9|ACtp10|AW125421|D16Wsu65e|mKIAA0520	adenylate cyclase 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-91077432-2	chr1	91077332	91077532	+	546.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008515, intron 4 of 22)	intron (NM_008515, intron 4 of 22)	23988.0	NM_001310732	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-12444156-2	chr19	12444056	12444256	+	827.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER110-int|LTR|ERV1	16251.0	NM_019540	56093.0	Mm.285849	NM_019540	ENSMUSG00000040065	Pfpl	Epcs5|Epcs50	pore forming protein-like	protein-coding	0.459571821398815	0.154529666312366	0.144803226030157	1.45698257331503	0.126200576301462	0.156698186543239	0.146963691387551	0.794447452770305	-1.73527198388341	0.386167309197264	1
Merged-chr11-76571343-2	chr11	76571171	76571371	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_198895, exon 1 of 23)	5' UTR (NM_198895, exon 1 of 23)	113.0	NM_198895	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	-0.506589554991219	-0.627035737750902	-0.629887489943159	-0.243655233984215	-0.388443221571827	-0.626389973187074	-0.464518348403933	-0.631692186946165	-0.414121044438777	0.871753652585661	1
Merged-chr10-100016176-1	chr10	100016076	100016276	+	1000.0	f0_balb.idr	intron (NM_001347156, intron 1 of 8)	CpG	355.0	NM_013598	17311.0	Mm.45124	NM_013598	ENSMUSG00000019966	Kitl	Clo|Con|Gb|Kitlg|Mgf|SCF|SF|SLF|Sl|blz|contrasted	kit ligand	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-93470392-4	chr2	93470284	93470484	+	896.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_040532)	TTS (NR_040532)	-7434.0	NM_001136055	12521.0	Mm.4261	NM_007656	ENSMUSG00000027215	Cd82	AA682076|AL023070|C33|IA4|Kai1|Tspan27	CD82 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115671046-2	chr11	115670962	115671162	+	569.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001313936, intron 2 of 5)	intron (NM_001313936, intron 2 of 5)	28472.0	NM_001313937	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120455073-2	chr11	120454973	120455173	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur3|SINE|Alu	-1573.0	NM_012065	18588.0	Mm.39200	NM_012065	ENSMUSG00000025386	Pde6g	Pdeg|p3AT	phosphodiesterase 6G, cGMP-specific, rod, gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-50965534-3	chr9	50965448	50965648	+	942.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178710, intron 3 of 15)	intron (NM_178710, intron 3 of 15)	43525.0	NM_178710	235344.0	Mm.104932	NM_178710	ENSMUSG00000037112	Sik2	G630080D20Rik|Snf1lk2	salt inducible kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3081728-2	chr4	3081628	3081828	+	563.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CACAG)n|Simple_repeat|Simple_repeat	-90355.0	NM_001167534	100312470.0	Mm.480297	NM_001167534	ENSMUSG00000115072	Vmn1r2	Gm11776	vomeronasal 1 receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-114412266-2	chr5	114412166	114412366	+	788.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_054093, exon 22 of 28)	exon (NM_054093, exon 22 of 28)	7798.0	NR_105994	102465621.0		NR_105994	ENSMUSG00000098731	Mir7027	Gm27831|mmu-mir-7027	microRNA 7027	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-132298818-4	chr1	132298683	132298883	+	803.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_144810, exon 1 of 5)	5' UTR (NM_144810, exon 1 of 5)	157.0	NM_144810	213417.0	Mm.39723	NM_144810	ENSMUSG00000042115	Klhdc8a	A630065K24Rik	kelch domain containing 8A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-24960712-1	chr10	24960612	24960812	+	655.0	f1_balb.idr	Intergenic	Intergenic	-33242.0	NM_007482	11846.0	Mm.154144	NM_007482	ENSMUSG00000019987	Arg1	AI|AI256583|Arg-1|PGIF	arginase, liver	protein-coding	1.46218014208743	0.967486172948466	0.939961841828271	0.917817654400964	1.61806939946799	1.9935328950069	2.14961424948096	2.84376656698437	3.66766000360177	0.00434141999660377	0.059917588710796
Merged-chr12-41485810-2	chr12	41485693	41485893	+	742.142822	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001271709, exon 1 of 2)	5' UTR (NM_001271709, exon 1 of 2)	264.0	NM_001271708	16981.0	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-25362809-2	chr10	25362709	25362909	+	555.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358754, intron 1 of 16)	intron (NM_001358754, intron 1 of 16)	3011.0	NM_001358751	13822.0	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-90656323-2	chr15	90656223	90656423	+	915.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033851, intron 1 of 3)	intron (NM_001033851, intron 1 of 3)	23065.0	NM_025815	66871.0	Mm.290991	NM_025815	ENSMUSG00000052560	Cpne8	1200003E11Rik|1500031E20Rik	copine VIII	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-20013445-3	chr8	20013344	20013544	+	781.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001270553, intron 6 of 9)	intron (NM_001270553, intron 6 of 9)	283868.0	NM_001039553	626415.0	Mm.425517	NM_001039553	ENSMUSG00000096265	4930467E23Rik	TSAP	RIKEN cDNA 4930467E23 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135934007-4	chr5	135933901	135934101	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018871, intron 1 of 1)	intron (NM_018871, intron 1 of 1)	640.0	NM_018871	22628.0	Mm.233813	NM_018871	ENSMUSG00000051391	Ywhag	14-3-3gamma|D7Bwg1348e	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139753070-2	chr5	139752970	139753170	+	568.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026748, intron 42 of 46)	intron (NM_026748, intron 42 of 46)	14873.0	NR_106004	102465628.0		NR_106004	ENSMUSG00000098574	Mir7037	Gm27447|mmu-mir-7037	microRNA 7037	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-108066192-3	chr5	108066157	108066357	+	942.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253880, intron 1 of 12)	intron (NM_001253880, intron 1 of 12)	583.0	NR_152817	17765.0	Mm.257149	NM_013827	ENSMUSG00000029267	Mtf2	9230112N11Rik|AA537621|C76717|M96|Pcl2	metal response element binding transcription factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-41220481-6	chr13	41220384	41220584	+	934.055542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019423)	promoter-TSS (NM_019423)	-81.0	NM_019423	54326.0	Mm.2567	NM_019423	ENSMUSG00000021364	Elovl2	AI317360|Ssc2	elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-24589226-4	chr15	24589101	24589301	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	824563.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-11862946-4	chr18	11862870	11863070	+	862.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022021, intron 1 of 8)	intron (NM_022021, intron 1 of 8)	-22532.0	NR_035447	100316686.0		NR_035447	ENSMUSG00000084565	Mir1901	Mirn1901|mmu-mir-1901	microRNA 1901	ncRNA	3.39048950092586	3.14598567428967	2.69252446589874	2.74147209604414	3.41694021749578	2.93984204846097	2.95938680812477	3.38611881603692	0.294009372671331	0.63607618853609	0.982417279970648
Merged-chr13-34253776-4	chr13	34253646	34253846	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033167, intron 3 of 10)	intron (NM_001033167, intron 3 of 10)	90782.0	NM_001110515	69666.0	Mm.24788	NM_001101430	ENSMUSG00000071451	Psmg4	PAC-4|mPAC4	proteasome (prosome, macropain) assembly chaperone 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90583751-4	chr2	90583639	90583839	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3092.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-26999625-4	chr9	26999545	26999745	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144543)	promoter-TSS (NM_144543)	-32.0	NM_144543	77862.0	Mm.16925	NM_144543	ENSMUSG00000035443	Thyn1	D730042P09Rik|HSPC144|MDS012|MY105|Thy28	thymocyte nuclear protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-155683890-4	chr4	155683788	155683988	+	921.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10454.0	NM_178699	230991.0	Mm.29083	NM_178699	ENSMUSG00000074738	Fndc10	B930041F14Rik|MNCb-3966	fibronectin type III domain containing 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191438628-4	chr1	191438534	191438734	+	974.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151615, intron 5 of 5)	intron (NR_151615, intron 5 of 5)	26414.0	NR_151615	102634668.0		NR_151615		Gm32200	-	predicted gene, 32200	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132765447-2	chr4	132765347	132765547	+	557.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D11|SINE|Alu	-2913.0	NM_011284	19891.0	Mm.2870	NM_011284	ENSMUSG00000028884	Rpa2	AA409079|AI325195|AU020965|RPA34|Rf-A2	replication protein A2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-48788472-2	chr11	48788372	48788572	+	853.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2A|LINE|L1	-11888.0	NM_008143	14694.0	Mm.5305	NM_008143	ENSMUSG00000020372	Rack1	AL033335|GB-like|Gnb2-rs1|Gnb2l1|p205	receptor for activated C kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-34874425-4	chr13	34874321	34874521	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1073.0	NM_013830	19134.0	Mm.10027	NM_013830	ENSMUSG00000021413	Prpf4b	2610037H07|Prp4|Prp4k|Prpk|cbp143	pre-mRNA processing factor 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-36477691-1	chr12	36477591	36477791	+	622.0	f1_c57bl6.idr	3' UTR (NM_001289504, exon 5 of 5)	3' UTR (NM_001289504, exon 5 of 5)	62075.0	NR_037309	100499526.0		NR_037309	ENSMUSG00000092917	Mir3472	mmu-mir-3472	microRNA 3472	ncRNA	-0.196306332067657	-0.251997402244822	-0.271058859323802	0.0579279465047568	-0.441060450040842	-0.430678472171967	-0.434079127908843	-0.436964100605512	-3.36102594127429	0.156429867849554	1
Merged-chr5-112951695-2	chr5	112951617	112951817	+	824.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_001285806, intron 9 of 20)	MER67A|LTR|ERV1	-55355.0	NM_028901	74376.0	Mm.441903	NM_028901	ENSMUSG00000072720	Myo18b	4932408L24Rik|4933411E19Rik|Gm448	myosin XVIIIb	protein-coding	0.908883671510699	0.985890980651221	2.35816946296705	0.94238233373207	1.72244088323844	1.48259230354206	2.37885498186139	1.93542578705629	1.15640132079885	0.364769489708386	0.860725908782199
Merged-chr5-43185006-4	chr5	43184913	43185113	+	965.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028417, intron 5 of 7)	ORR1E|LTR|ERVL-MaLR	-48450.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-62939325-2	chr16	62939225	62939425	+	611.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	85018.0	NM_011173	19128.0	Mm.127156	NM_011173	ENSMUSG00000022912	Pros1	AW214361	protein S (alpha)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-107435777-4	chr8	107435672	107435872	+	999.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025830)	promoter-TSS (NM_025830)	-626.0	NM_025830	66894.0	Mm.390058	NM_025830	ENSMUSG00000031930	Wwp2	1300010O06Rik|AA690238|AIP2|AW554328	WW domain containing E3 ubiquitin protein ligase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-77742754-1	chr18	77742654	77742854	+	802.0	f0_balb.idr	Intergenic	Intergenic	-9284.0	NR_155289	105246501.0	Mm.403904	NR_155289		A330094K24Rik	-	RIKEN cDNA A330094K24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-65070780-4	chr18	65070694	65070894	+	997.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031881, intron 1 of 29)	intron (NM_031881, intron 1 of 29)	47267.0	NM_031881	83814.0	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70080377-2	chr14	70080277	70080477	+	737.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001289925, exon 3 of 3)	3' UTR (NM_001289925, exon 3 of 3)	2582.0	NM_001289927	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-172392369-3	chr2	172392277	172392477	+	867.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-1417.0	NM_001080820	320664.0	Mm.210195	NM_001033538	ENSMUSG00000074570	Cass4	F730031O20Rik	Cas scaffolding protein family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-49307758-4	chr13	49307676	49307876	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015759, intron 1 of 17)	intron (NM_015759, intron 1 of 17)	1432.0	NM_015759	30938.0	Mm.291089	NM_015759	ENSMUSG00000037946	Fgd3	5830461L01Rik|ZFYVE5	FYVE, RhoGEF and PH domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-120112158-2	chr10	120112058	120112258	+	949.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_080446, intron 1 of 12)	RLTR17B_Mm|LTR|ERVK	807.0	NM_080446	117599.0	Mm.214703	NM_080446	ENSMUSG00000020228	Helb	AI447783|D10Ertd664e	helicase (DNA) B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-8175259-2	chr14	8175159	8175359	+	845.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2267.0	NM_024221	68263.0	Mm.301527	NM_024221	ENSMUSG00000021748	Pdhb	2610103L06Rik|AL024199|C81408	pyruvate dehydrogenase (lipoamide) beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-99633435-3	chr10	99633355	99633555	+	830.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038019, intron 1 of 2)	B4|SINE|B4	8465.0	NR_038018	100417125.0	Mm.391428	NR_038018	ENSMUSG00000112503	Gm18409	-	mediator of cell motility 1 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-46870253-4	chr12	46870162	46870362	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51487.0	NM_021361	664883.0	Mm.247195	NM_021361	ENSMUSG00000021047	Nova1	9430099M15Rik|G630039L02|Nova-1	neuro-oncological ventral antigen 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-121919975-3	chr14	121919884	121920084	+	680.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026861, intron 4 of 8)	intron (NM_026861, intron 4 of 8)	-4210.0	NM_182806	110168.0	Mm.37405	NM_182806	ENSMUSG00000050350	Gpr18	-	G protein-coupled receptor 18	protein-coding	2.94766573182456	2.26232314196098	2.34859067084425	2.11781854619078	3.90119195852342	2.86104836324269	2.51484432544486	2.29135168401294	1.11925809182548	0.150287076744247	0.602305959756336
Merged-chr7-28050157-4	chr7	28050059	28050259	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011874)	promoter-TSS (NM_011874)	-67.0	NM_011874	23996.0	Mm.29582	NM_011874	ENSMUSG00000030603	Psmc4	CIP21|MIP224	proteasome (prosome, macropain) 26S subunit, ATPase, 4	protein-coding	5.95046453297048	5.81138996270621	5.93064262498551	5.63742517173745	6.23388591944046	5.9728261235593	5.85689950668232	5.34038726258216	0.0571528367286802	0.825165511281484	0.998431161219273
Merged-chr5-114685584-2	chr5	114685484	114685684	+	974.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_019821, intron 1 of 4)	intron (NM_019821, intron 1 of 4)	5351.0	NM_019821	56356.0	Mm.275766	NM_019821	ENSMUSG00000011884	Gltp	1110001F24Rik|C76925|C77564	glycolipid transfer protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-110342210-3	chr9	110342117	110342317	+	840.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001144, intron 1 of 22)	intron (NM_001001144, intron 1 of 22)	8861.0	NM_001001144	235623.0	Mm.288741	NM_001001144	ENSMUSG00000032485	Scap	9530044G19|mKIAA0199	SREBF chaperone	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-113143711-3	chr7	113143610	113143810	+	757.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1695.0	NR_045978	75239.0	Mm.381688	NR_045978	ENSMUSG00000110009	4930543E12Rik	4930545H14Rik	RIKEN cDNA 4930543E12 gene	ncRNA	2.76957647563187	3.96409821948771	3.64490769423167	3.79411513894071	3.46049754864342	2.33991969953333	3.74085591702299	2.82403938292736	-0.623744920443217	0.315757774310966	0.81836011870312
Merged-chr15-58141381-4	chr15	58141277	58141477	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001326599)	promoter-TSS (NM_001326599)	11.0	NM_001326599	76773.0	Mm.26771	NM_029734	ENSMUSG00000022359	Wdyhv1	2410187C16Rik|AU014961|AW550036|Ntaq1	WDYHV motif containing 1	protein-coding	4.07494087174714	4.17380985887318	3.88504162315833	3.98948917894466	4.47072329974346	4.6815224605136	4.84609702750951	5.13957652254059	0.990396338075635	0.0101835625922451	0.11020660010381
Merged-chr3-84040128-8	chr3	84040038	84040238	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172681)	promoter-TSS (NM_172681)	23.0	NM_172681	229473.0	Mm.28838	NM_172681	ENSMUSG00000033767	Tmem131l	D930015E06Rik|Kiaa0922|mKIAA0922	transmembrane 131 like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71223920-2	chr17	71223820	71224020	+	924.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357791, intron 3 of 19)	MTD|LTR|ERVL-MaLR	19266.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-46682832-2	chr17	46682732	46682932	+	577.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_009358)	TTS (NM_009358)	1652.0	NM_001277312	17256.0	Mm.329083	NM_010787	ENSMUSG00000002768	Mea1	Mea-1	male enhanced antigen 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-114886204-1	chr6	114886104	114886304	+	557.0	f0_balb.idr	intron (NM_001356371, intron 3 of 5)	intron (NM_001356371, intron 3 of 5)	35617.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-38403664-3	chr15	38403561	38403761	+	751.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	86886.0	NR_105916	102465574.0		NR_105916	ENSMUSG00000099110	Mir6951	Gm27765|mmu-mir-6951	microRNA 6951	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-35920430-2	chr18	35920330	35920530	+	800.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-44400.0	NM_001289602	74002.0	Mm.196944	NM_028707	ENSMUSG00000024347	Psd2	6330404E20Rik|AW125584|EFA6C	pleckstrin and Sec7 domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-63931343-3	chr7	63931250	63931450	+	713.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021366, intron 1 of 1)	intron (NM_021366, intron 1 of 1)	7565.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	3.58553201530424	2.30716576043541	2.03641383229576	2.1616959225697	3.47896702493558	3.11533523116805	2.80639896375661	2.476422260125	0.541083579904103	0.484363373286651	0.931207887927275
Merged-chr7-144469410-2	chr7	144469310	144469510	+	861.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357116, intron 1 of 15)	intron (NM_001357116, intron 1 of 15)	1525.0	NM_007803	13043.0	Mm.205601	NM_007803	ENSMUSG00000031078	Cttn	1110020L01Rik|Ems1	cortactin	protein-coding	0.129897914875308	0.00906261390130686	0.43858786889834	0.000414961190895707	-0.00488115813742038	0.0101667405860008	0.447735313535351	0.515837141082422	0.853399055529955	0.689051558607175	1
Merged-chr10-127049577-4	chr10	127049484	127049684	+	844.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010009, intron 2 of 8)	intron (NM_010009, intron 2 of 8)	1338.0	NM_010009	13115.0	Mm.6216	NM_010009	ENSMUSG00000006724	Cyp27b1	Cp2b|Cyp1|Cyp27b|Cyp40|P450c1|Pddr|Vdd1|Vddr|VddrI|Vdr	cytochrome P450, family 27, subfamily b, polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-75436676-3	chr9	75436603	75436803	+	756.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-4821.0	NM_001039522	235497.0	Mm.41508	NM_001006122	ENSMUSG00000042487	Leo1	Gm185	Leo1, Paf1/RNA polymerase II complex component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-166341935-2	chr1	166341835	166342035	+	587.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37232.0	NM_030245	27878.0	Mm.100665	NM_030245	ENSMUSG00000026563	Tada1	2900026B15Rik|D1Ertd251e|Staf42|Tada1l	transcriptional adaptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-85117628-4	chr16	85117528	85117728	+	959.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198825, intron 2 of 15)	intron (NM_001198825, intron 2 of 15)	56079.0	NM_001198825	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-74928980-4	chr14	74928880	74929080	+	798.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033439, intron 1 of 19)	intron (NM_001033439, intron 1 of 19)	18897.0	NM_001252132	380916.0	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27308627-4	chr2	27308514	27308714	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_133905, intron 3 of 29)	MTE2a|LTR|ERVL-MaLR	-61311.0	NM_138665	192166.0	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-112280350-4	chr5	112280224	112280424	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001326590, intron 1 of 5)	MIR3|SINE|MIR	3633.0	NM_009419	22022.0	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-129474718-4	chr6	129474636	129474836	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1957.0	NR_132130	56644.0	Mm.239516	NM_020008	ENSMUSG00000079293	Clec7a	BGR|Clecsf12|beta-GR	C-type lectin domain family 7, member a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-30746483-3	chr14	30746419	30746619	+	997.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166531, intron 2 of 21)	intron (NM_001166531, intron 2 of 21)	30904.0	NM_001166532	54650.0	Mm.294662	NM_019460	ENSMUSG00000006527	Sfmbt1	4930442N21Rik|9330180L21Rik|AA536974|Sfmbt|Smr	Scm-like with four mbt domains 1	protein-coding	-1.13743240904173	-1.11567412797911	-0.962201967275645	-0.976616601878056	-1.13700890044744	-1.11340175315579	-0.958792648842644	-0.974094318268863	0.0348133969442306	0.990404545603231	1
Merged-chr18-65301554-2	chr18	65301454	65301654	+	627.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037294, intron 5 of 12)	intron (NM_001037294, intron 5 of 12)	52693.0	NR_029600	387231.0		NR_029600	ENSMUSG00000065402	Mir122	Mir122a|Mirn122a|mir-122|mmu-mir-122	microRNA 122	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31130476-2	chr14	31130376	31130576	+	900.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1546.0	NM_001308464	66487.0	Mm.379116	NM_001308091	ENSMUSG00000058351	Smim4	2010107H07Rik|Gm41122	small integral membrane protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-118548755-6	chr2	118548652	118548852	+	866.944458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138313, intron 2 of 4)	intron (NM_138313, intron 2 of 4)	934.0	NM_138313	171543.0	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	1.06814268605956	0.93810201014263	2.01220487102523	1.8636518693129	1.07495620623917	1.37443355588779	1.61914916678642	1.43684631373366	-0.608959159424671	0.622004457297383	0.979537295922371
Merged-chr10-78279286-3	chr10	78279238	78279438	+	804.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053014, intron 7 of 9)	intron (NM_053014, intron 7 of 9)	-34696.0	NM_001081055	216131.0	Mm.27539	NM_001081055	ENSMUSG00000000374	Trappc10	B230307C21Rik|Gm870|Tmem1|b2b2416Clo|b2b2613Clo	trafficking protein particle complex 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-109470316-4	chr11	109470224	109470424	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029842, intron 1 of 5)	intron (NM_001029842, intron 1 of 5)	2905.0	NM_134038	104681.0	Mm.265874	NM_134038	ENSMUSG00000041920	Slc16a6	AW743111|ESTM12|MCT 6|MCT 7|MCT6	solute carrier family 16 (monocarboxylic acid transporters), member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-137624246-4	chr5	137624133	137624333	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027708, exon 3 of 10)	exon (NM_027708, exon 3 of 10)	845.0	NM_027708	71176.0	Mm.474695	NM_027708	ENSMUSG00000089984	Fbxo24	4933422D21Rik|Fbx24	F-box protein 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-130860104-2	chr4	130860004	130860204	+	556.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53230.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-31095905-1	chr17	31095805	31096005	+	586.0	f1_c57bl6.idr	intron (NM_009593, intron 4 of 14)	intron (NM_009593, intron 4 of 14)	33706.0	NM_011575	21786.0	Mm.4641	NM_011575	ENSMUSG00000024029	Tff3	ITF|mITF	trefoil factor 3, intestinal	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-35032550-1	chr9	35032450	35032650	+	591.0	f1_balb.idr	intron (NM_001190912, intron 14 of 15)	intron (NM_001190912, intron 14 of 15)	-84178.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	0.161508063287808	-0.0719241452583371	-0.0763054293341196	-0.0796712296488341	0.447829845206892	0.265782175674596	-0.0753409321347717	0.20702441653724	2.21189625588498	0.319116593905062	1
Merged-chr1-43092497-7	chr1	43092395	43092595	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357299)	promoter-TSS (NM_001357299)	-9.0	NM_001357299	73122.0	Mm.246069	NM_001013025	ENSMUSG00000070939	Tgfbrap1	3110018K12Rik|AU024090|AU042859|AW742551|Trap1	transforming growth factor, beta receptor associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123080318-4	chr5	123080237	123080437	+	996.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039723, intron 1 of 11)	intron (NM_001039723, intron 1 of 11)	4062.0	NM_001039723	330189.0	Mm.391872	NM_001039723	ENSMUSG00000054434	Tmem120b	-	transmembrane protein 120B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-8149032-2	chr17	8148932	8149132	+	912.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1200.0	NM_026611	68195.0	Mm.181237	NM_026611	ENSMUSG00000094724	Rnaset2b	0610007O07Rik|4833423A10Rik|4930532K22Rik|C79750|RNASE6PL|Rnaset2	ribonuclease T2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-121793707-4	chr11	121793614	121793814	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	-36504.0	NM_029049	74675.0	Mm.61213	NM_029049	ENSMUSG00000039198	Ptchd3	4930451E13Rik|4933440L20Rik|RNDEu-3	patched domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-20067545-1	chr1	20067445	20067645	+	763.0	f0_balb.idr	intron (NM_153179, intron 66 of 66)	RLTR35B_MM|LTR|ERVL	-288909.0	NR_045734	75028.0	Mm.417820	NR_045734	ENSMUSG00000089914	4930486I03Rik	-	RIKEN cDNA 4930486I03 gene	ncRNA	0.422226020689953	-0.000806903661600689	-0.00534178799762366	-0.00882392989697187	0.431775672863312	0.182399150112659	-0.00434368272606309	0.390629006094827	1.1677802552833	0.58789075717611	1
Merged-chr6-58610645-2	chr6	58610545	58610745	+	543.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011920, intron 1 of 15)	intron (NM_011920, intron 1 of 15)	13973.0	NM_011920	26357.0	Mm.333096	NM_011920	ENSMUSG00000029802	Abcg2	ABC15|ABCP|AI428558|BCRP|Bcrp1|MXR|MXR1	ATP binding cassette subfamily G member 2 (Junior blood group)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-45025223-2	chr2	45025123	45025323	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355291, intron 2 of 9)	intron (NM_001355291, intron 2 of 9)	-2046.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-49100609-4	chr11	49100517	49100717	+	938.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C-int|LTR|ERVK	13140.0	NM_146337	258334.0	Mm.390388	NM_146337	ENSMUSG00000047511	Olfr1396	MOR276-2	olfactory receptor 1396	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-3547601-1	chr13	3547501	3547701	+	656.0	f1_c57bl6.idr	intron (NM_008112, intron 1 of 10)	B3|SINE|B2	9526.0	NM_008112	14569.0	Mm.153226	NM_008112	ENSMUSG00000021218	Gdi2	GDI-B|GDIB|Gdi3	guanosine diphosphate (GDP) dissociation inhibitor 2	protein-coding	0.701282220863725	0.96289133784945	1.32675154791803	0.750803319249408	0.413698692490868	0.440727329983846	0.788192150803785	0.424507257011057	-2.76517231750799	0.112861597172369	1
Merged-chr17-84145538-4	chr17	84145440	84145640	+	723.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42407.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-29991330-4	chr16	29991134	29991334	+	973.6124880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12110.0	NR_037689	328657.0	Mm.425982	NM_001033403		Gm1968	-	predicted gene 1968	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-17000873-3	chr12	17000775	17000975	+	786.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172574)	promoter-TSS (NM_172574)	-757.0	NM_172574	217430.0	Mm.379451	NM_172574	ENSMUSG00000045679	Pqlc3	C78076|E030024M05Rik	PQ loop repeat containing	protein-coding	2.15278904620911	0.891327492689344	1.1123450782304	2.21956516334081	1.48958028546646	0.895856609343308	1.76241782238555	0.857402443149237	-1.27827929796869	0.342560709059254	0.843489544525844
Merged-chr5-16536384-2	chr5	16536284	16536484	+	555.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-17111.0	NM_001289460	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118920915-2	chr9	118920815	118921015	+	769.125	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5621.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-164366965-2	chr1	164366865	164367065	+	925.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_138314, intron 9 of 13)	intron (NM_138314, intron 9 of 13)	59293.0	NM_138314	171567.0	Mm.219428	NM_138314	ENSMUSG00000026575	Nme7	D530024H21Rik|Nm23-M7|Nm23-r7	NME/NM23 family member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-52453300-4	chr3	52453201	52453401	+	984.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63663.0	NR_153344	102631981.0	Mm.394225	NR_153344		Gm30173	-	predicted gene, 30173	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-55076367-2	chr11	55076267	55076467	+	694.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_177471, intron 1 of 6)	intron (NM_177471, intron 1 of 6)	1764.0	NM_177471	52570.0	Mm.22361	NM_177471	ENSMUSG00000049588	Ccdc69	2210021E03Rik|D11Ertd461e	coiled-coil domain containing 69	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101333905-3	chr15	101333812	101334012	+	776.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-35440.0	NR_035462	100316694.0		NR_035462	ENSMUSG00000088459	Mir1941	mmu-mir-1941	microRNA 1941	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52062110-4	chr13	52061998	52062198	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	-34643.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-46751613-4	chr17	46751515	46751715	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028065, intron 1 of 5)	intron (NM_028065, intron 1 of 5)	599.0	NM_001305989	72029.0	Mm.240325	NM_028065	ENSMUSG00000023973	Cnpy3	1600025D17Rik|2410050O22Rik|AI413153|CAG4A|ERDA5|PRAT4A|Tnrc5	canopy FGF signaling regulator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-23747694-2	chr18	23747594	23747794	+	556.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4611.0	NR_126066	100502834.0	Mm.213614	NR_126066	ENSMUSG00000086287	Gm15972	-	predicted gene 15972	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-105640413-4	chr7	105640319	105640519	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029802)	promoter-TSS (NM_029802)	-3.0	NM_029802	76932.0	Mm.41637	NM_029802	ENSMUSG00000030881	Arfip2	2310002N04Rik|POR|Por1	ADP-ribosylation factor interacting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-23874116-3	chr17	23874018	23874218	+	655.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6046.0	NM_020487	57256.0	Mm.386785	NM_020487	ENSMUSG00000024116	Prss21	1700023E12Rik|TESP5|mT4|testisin	protease, serine 21	protein-coding	-1.50658480857466	-1.31822241545669	-1.32811469517455	-1.49189122903924	-1.50428850965973	-1.47172943794533	-1.32587529987902	-1.49043671238036	-0.805186615030075	0.80054413848678	1
Merged-chr8-79941197-3	chr8	79941095	79941295	+	910.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	116813.0	NM_020259	15245.0	Mm.254493	NM_020259	ENSMUSG00000064325	Hhip	Hhip1	Hedgehog-interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-61241755-4	chr13	61241649	61241849	+	823.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13599.0	NM_019541	56094.0	Mm.342861	NM_019541	ENSMUSG00000057446	Cts8	CTS2|Epcs68|Epcs70	cathepsin 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-110205097-3	chr2	110204962	110205162	+	880.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	100663.0	NM_130452	170442.0	Mm.27335	NM_130452	ENSMUSG00000041660	Bbox1	AI874739	butyrobetaine (gamma), 2-oxoglutarate dioxygenase 1 (gamma-butyrobetaine hydroxylase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-61935704-1	chr15	61935604	61935804	+	825.0	f0_balb.idr	Intergenic	Lx8|LINE|L1	-49637.0	NM_001177354	17869.0	Mm.2444	NM_010849	ENSMUSG00000022346	Myc	AU016757|Myc2|Niard|Nird|bHLHe39	myelocytomatosis oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-138550412-4	chr1	138550327	138550527	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021605, intron 2 of 9)	RLTR26_Mus|LTR|ERVK	69330.0	NM_021605	59125.0	Mm.143817	NM_021605	ENSMUSG00000026393	Nek7	2810460C19Rik|AU020186	NIMA (never in mitosis gene a)-related expressed kinase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-73553588-4	chr2	73553485	73553685	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24098.0	NM_153138	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-8634979-4	chr15	8634879	8635079	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_148938, exon 10 of 10)	3' UTR (NM_148938, exon 10 of 10)	75828.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-40242392-1	chr9	40242292	40242492	+	541.0	f1_balb.idr	Intergenic	Intergenic	-26824.0	NM_001083917	235281.0	Mm.290083	NM_153522	ENSMUSG00000049281	Scn3b	1110001K16Rik|4833414B02Rik|Scnb3	sodium channel, voltage-gated, type III, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-92254695-4	chr5	92254597	92254797	+	935.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011148, intron 1 of 16)	intron (NM_011148, intron 1 of 16)	1581.0	NM_011148	19023.0	Mm.87155	NM_011148	ENSMUSG00000029410	Ppef2	-	protein phosphatase, EF hand calcium-binding domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-116557082-4	chr4	116556980	116557180	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029868)	promoter-TSS (NM_029868)	-647.0	NM_029868	77110.0	Mm.41715	NM_029868	ENSMUSG00000034042	Gpbp1l1	5330440M15Rik|BC002292	GC-rich promoter binding protein 1-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-102021842-3	chr13	102021737	102021937	+	872.1333619999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M5|LINE|L1	-253620.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-43546196-4	chr7	43546096	43546296	+	964.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13025.0	NM_021293	12489.0	Mm.140157	NM_021293	ENSMUSG00000004609	Cd33	Siglec-3|gp67	CD33 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-28412232-2	chr13	28412132	28412332	+	867.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger7|DNA|TcMar-Tigger	269748.0	NM_023746	28078.0	Mm.155058	NM_023746	ENSMUSG00000017064	Prl5a1	1600013P04Rik|D13Wsu14e|Ghd24|PLP-L|Prlpl	prolactin family 5, subfamily a, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56767005-2	chr17	56766905	56767105	+	726.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_144858, exon 3 of 13)	exon (NM_144858, exon 3 of 13)	2254.0	NM_144858	224907.0	Mm.293973	NM_144858	ENSMUSG00000007603	Dus3l	AI662135|AW557805	dihydrouridine synthase 3-like (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-93816015-3	chr16	93815937	93816137	+	897.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-16084.0	NM_001045529	338467.0	Mm.287329	NM_001045529	ENSMUSG00000039456	Morc3	1110051N18Rik|AI452146|BF318192|D16Jhu32e|NXP2|Zcwcc3	microrchidia 3	protein-coding	2.84635497153337	3.42782115771765	1.83399639100153	3.07991462146718	2.94834604305767	3.0227786373399	2.07294143271802	2.92700443816044	-0.225435925715594	0.764321115709021	0.998431161219273
Merged-chr18-80695174-2	chr18	80695074	80695274	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198429, intron 2 of 9)	intron (NM_198429, intron 2 of 9)	12999.0	NM_001164111	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-148221051-4	chr3	148220932	148221132	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	733603.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	5.52410030995833	4.96122362507901	5.86030869299521	6.02435747586414	5.68566682385388	5.91891247238188	6.351016513569	6.03067944767168	0.401650127867416	0.15010793927428	0.602305959756336
Merged-chr5-30649478-4	chr5	30649379	30649579	+	817.450012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175675, intron 1 of 5)	intron (NM_175675, intron 1 of 5)	1540.0	NM_175675	74919.0	Mm.247985	NM_175675	ENSMUSG00000029175	Slc35f6	4930471M23Rik|5730478O19Rik|ANT2BP|P40|Tango9	solute carrier family 35, member F6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-35054587-1	chr9	35054487	35054687	+	709.0	f1_balb.idr	intron (NM_009178, intron 4 of 10)	intron (NM_009178, intron 4 of 10)	-62141.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	0.0418955685417914	-0.388805806011569	-0.392368345262347	-0.395104032383659	-0.145414802125364	-0.388000155654849	0.04365080288786	-0.394626926847786	0.580570155464912	0.820694103524725	1
Merged-chr1-148904286-4	chr1	148904180	148904380	+	999.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	1018159.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-155669473-6	chr4	155669328	155669528	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001256107)	promoter-TSS (NM_001256107)	-174.0	NM_001256107	76580.0	Mm.235738	NM_145124	ENSMUSG00000029060	Mib2	2210008I11Rik|Zzank1|skd	mindbomb E3 ubiquitin protein ligase 2	protein-coding	5.56186454975041	5.87763990988646	5.98270481867737	5.36601053597741	5.97900621376411	6.07717092407225	6.04022687895767	5.06604216187318	0.145560606056112	0.609847882812281	0.974992433107985
Merged-chr7-128460524-6	chr7	128460472	128460672	+	892.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347641, intron 1 of 12)	CpG	941.0	NM_009383	21843.0	Mm.242072	NM_009383	ENSMUSG00000030846	Tial1	5330433G13Rik|AL033329|TIAR|mTIAR	Tia1 cytotoxic granule-associated RNA binding protein-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-76177210-1	chr12	76177110	76177310	+	730.5	f0_balb.idr	promoter-TSS (NR_104386)	promoter-TSS (NR_104386)	49.0	NM_010157	13983.0	Mm.2561	NM_010157	ENSMUSG00000021055	Esr2	ER[b]|ERbeta|Estrb	estrogen receptor 2 (beta)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44130278-3	chr9	44130188	44130388	+	745.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152189, intron 1 of 1)	CpG	4197.0	NR_152189	100038560.0	Mm.429758	NR_152189		Gm10687	-	predicted gene 10687	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-19971030-4	chr14	19970933	19971133	+	981.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285908, intron 1 of 3)	intron (NM_001285908, intron 1 of 3)	5660.0	NM_001285911	14702.0	Mm.41737	NM_010315	ENSMUSG00000043004	Gng2	-	guanine nucleotide binding protein (G protein), gamma 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-48871464-4	chr11	48871386	48871586	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008326)	promoter-TSS (NM_008326)	-66.0	NM_008326	15944.0	Mm.29938	NM_008326	ENSMUSG00000046879	Irgm1	Ifggd3|Ifi1|Iigp3|Iipg3|Irgm	immunity-related GTPase family M member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41333805-2	chr19	41333705	41333905	+	931.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 2 of 16)	L1MC1|LINE|L1	51265.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-106366788-2	chr9	106366688	106366888	+	852.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1844.0	NM_153459	235584.0	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118175428-2	chr11	118175328	118175528	+	870.0714109999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001112700, intron 10 of 12)	intron (NM_001112700, intron 10 of 12)	37314.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-168080826-4	chr2	168080738	168080938	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021409)	promoter-TSS (NM_021409)	-166.0	NM_021409	58220.0	Mm.292834	NM_021409	ENSMUSG00000044641	Pard6b	AV025615|Par6b	par-6 family cell polarity regulator beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-80005118-4	chr18	80005017	80005217	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41778.0	NM_053117	93737.0	Mm.24678	NM_053117	ENSMUSG00000056214	Pard6g	2410049N21Rik|Par6a	par-6 family cell polarity regulator gamma	protein-coding	3.87627954179082	4.46488665564097	3.73704105229924	3.38586866841202	3.85372158184968	3.42905915125391	3.76561359849365	3.8593286453773	-0.25388188170249	0.605425095402405	0.974576632476413
Merged-chr3-65949675-4	chr3	65949551	65949751	+	808.891663	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019937, intron 5 of 10)	intron (NM_019937, intron 5 of 10)	8598.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-46496766-4	chr17	46496653	46496853	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207161)	promoter-TSS (NM_207161)	-36.0	NM_207161	381101.0	Mm.35801	NM_207161	ENSMUSG00000040658	Dnph1	C76683|Rcl	2'-deoxynucleoside 5'-phosphate N-hydrolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-13214648-2	chr1	13214546	13214746	+	676.5	f0_balb.idr|f1_balb.idr	intron (NM_008678, intron 4 of 22)	intron (NM_008678, intron 4 of 22)	-87483.0	NM_001081209	383491.0	Mm.309380	NM_001081209	ENSMUSG00000042414	Prdm14	-	PR domain containing 14	protein-coding	2.37393342907374	1.72578282834994	2.34578576675522	2.50131215862721	2.48538339531751	2.87875252227373	1.68660551738686	2.85723738878609	0.62928638454557	0.459385248790309	0.920253375164647
Merged-chr8-27253821-4	chr8	27253678	27253878	+	956.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-6549.0	NM_007918	13685.0	Mm.6700	NM_007918	ENSMUSG00000031490	Eif4ebp1	4e-bp1|AA959816|PHAS-I	eukaryotic translation initiation factor 4E binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-132067938-3	chr1	132067873	132068073	+	606.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172510)	promoter-TSS (NM_172510)	89.0	NM_172510	213006.0	Mm.208445	NM_172510	ENSMUSG00000059149	Mfsd4a	A230072B04|A930031D07Rik|AI850289|Mfsd4	major facilitator superfamily domain containing 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-26774478-2	chr10	26774378	26774578	+	906.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_176837, intron 1 of 14)	intron (NM_176837, intron 1 of 14)	1966.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85602922-4	chr12	85602833	85603033	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205053, intron 1 of 3)	MIR|SINE|MIR	2915.0	NM_001205053	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-105032299-1	chr13	105032199	105032399	+	591.5	f0_balb.idr	intron (NM_029879, intron 2 of 5)	intron (NM_029879, intron 2 of 5)	22631.0	NM_029879	52882.0	Mm.100348	NM_029879	ENSMUSG00000021719	Rgs7bp	A930030I01Rik|AI842293|D13Bwg1146e|R7bp	regulator of G-protein signalling 7 binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-53299858-4	chr11	53299756	53299956	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008300, intron 1 of 18)	CpG	623.0	NM_008300	15525.0	Mm.239865	NM_008300	ENSMUSG00000020361	Hspa4	70kDa|AI317151|APG-2|Hsp110|Hsp70RY|mKIAA4025	heat shock protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-114210530-1	chr12	114210430	114210630	+	932.7999880000001	f0_balb.idr	Intergenic	Intergenic	258936.0	NR_106062	102465663.0		NR_106062	ENSMUSG00000105438	Mir7094-1	mmu-mir-7094-1	microRNA 7094-1	ncRNA	1.48504308123874	1.17562509450983	1.78336586489947	1.12376421984297	2.51015749105555	2.02173242619639	2.58260860358244	2.41759234183305	2.83430354955412	0.00785657194539556	0.0918147566891454
Merged-chr1-151718798-2	chr1	151718698	151718898	+	859.75	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_022018, exon 14 of 14)	3' UTR (NM_022018, exon 14 of 14)	35929.0	NR_151474	102640772.0		NR_151473	ENSMUSG00000100594	2810414N06Rik	-	RIKEN cDNA 2810414N06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105860510-4	chr8	105860424	105860624	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357229)	promoter-TSS (NM_001357229)	-9.0	NM_026532	68051.0	Mm.455474	NM_026532	ENSMUSG00000008450	Nutf2	2700067I02Rik|AI115459|AI413596|AW546000|Ntf2|Ntf3|PP15	nuclear transport factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120807704-2	chr8	120807604	120807804	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	69065.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101844276-2	chr7	101844176	101844376	+	626.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001303239, intron 2 of 5)	intron (NM_001303239, intron 2 of 5)	1055.0	NM_001303231	14276.0	Mm.439666	NM_008035	ENSMUSG00000032725	Folr2	FBP2|FR-P3|FR-beta|Folbp-2|Folbp2	folate receptor 2 (fetal)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-78488100-4	chr1	78487988	78488188	+	624.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001278075, intron 1 of 17)	intron (NM_001278075, intron 1 of 17)	809.0	NR_102758	23874.0	Mm.17898	NM_011811	ENSMUSG00000026245	Farsb	C76708|Farsa|Farsl|Farslb|Frsb	phenylalanyl-tRNA synthetase, beta subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-111522205-4	chr8	111522091	111522291	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_176923)	promoter-TSS (NM_176923)	-84.0	NM_176923	319481.0	Mm.247294	NM_176923	ENSMUSG00000031959	Wdr59	5430401O09Rik|Cdw12	WD repeat domain 59	protein-coding	5.91507996912564	6.09188605940216	5.92697534412905	5.48315635992917	5.58523182264215	5.73368231493311	6.0865944728233	5.63425683083361	-0.109062134493871	0.667573645762722	0.992919248164604
Merged-chr8-108182980-4	chr8	108182867	108183067	+	958.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	401710.0	NR_077224	109215.0	Mm.65282	NR_077224	ENSMUSG00000110613	Lncbate1	3010033K07Rik|Lnc-BATE1	brown adipose tissue enriched long non-coding RNA 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-77708686-4	chr13	77708587	77708787	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163419)	promoter-TSS (NM_001163419)	-3.0	NM_001163420	68675.0	Mm.343005	NM_138312	ENSMUSG00000064138	Fam172a	1110033M05Rik|2610318O14Rik|53-E6|9430037D06Rik|AF064782|pEN87	family with sequence similarity 172, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180394127-2	chr1	180394027	180394227	+	728.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081175, intron 2 of 7)	intron (NM_001081175, intron 2 of 7)	-63578.0	NR_003623	277333.0	Mm.389223	NM_199472		Gm5069	EG277333	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-26343746-2	chr4	26343646	26343846	+	661.1999509999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_172865, intron 1 of 4)	Lx8|LINE|L1	2906.0	NM_172865	242362.0	Mm.245602	NM_172865	ENSMUSG00000040520	Manea	4932703L02Rik	mannosidase, endo-alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116001825-2	chr11	116001725	116001925	+	752.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001005608, intron 30 of 39)	intron (NM_001005608, intron 30 of 39)	-8110.0	NR_152190	100038636.0	Mm.450138	NR_152190		B230344G16Rik	-	RIKEN cDNA B230344G16 gene	ncRNA	-1.8418762459921	-1.8125357239735	-1.82140854000656	-1.82869693527674	-1.56059678980999	-1.8106129477253	-1.81939992894326	-1.82739231600805	1.3620893379502	0.699511506488145	1
Merged-chr10-93081696-4	chr10	93081646	93081846	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347060)	promoter-TSS (NM_001347060)	-150.0	NM_001347060	380654.0	Mm.34980	NM_001347060	ENSMUSG00000020014	Cfap54	4930485B16Rik|Gm872	cilia and flagella associated protein 54	protein-coding	5.55137458057928	5.81831207877269	5.50284389798396	5.47686833414634	4.86933006233357	5.48877697534029	5.04802735403102	4.64855709334681	-0.639239173424731	0.0312355707821674	0.243564370609474
Merged-chr2-147178969-1	chr2	147178869	147179069	+	609.5	f0_balb.idr	intron (NM_001077632, intron 2 of 2)	intron (NM_001077632, intron 2 of 2)	-5114.0	NR_030769	100313531.0	Mm.405189	NR_030769	ENSMUSG00000086509	Nkx2-2os	Gm14112|Nkx2-2as|Nkx2.2AS	NK2 homeobox 2, opposite strand	ncRNA	2.63583053817321	4.0130167588542	3.11417375746633	3.21747341881176	3.38185462941953	4.30170439981517	2.76436278526842	2.80682055214588	0.208449432452515	0.748788567115911	0.998431161219273
Merged-chr7-19362783-1	chr7	19362683	19362883	+	1000.0	f1_c57bl6.idr	intron (NM_001010836, intron 1 of 12)	intron (NM_001010836, intron 1 of 12)	1567.0	NM_001010836	333654.0	Mm.333640	NM_001010836	ENSMUSG00000040734	Ppp1r13l	AV260376|IASPP|Nkip1|wa3	protein phosphatase 1, regulatory (inhibitor) subunit 13 like	protein-coding	-0.583449067377857	-1.02282152578373	-1.03400008326803	-1.03822883962362	-0.777224525718346	-1.02039908574442	-1.03146950288059	-1.03789690212328	-0.791518325477985	0.808258493497815	1
Merged-chr14-19985335-4	chr14	19985272	19985472	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8123.0	NM_001285909	14702.0	Mm.41737	NM_010315	ENSMUSG00000043004	Gng2	-	guanine nucleotide binding protein (G protein), gamma 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-161329421-2	chr1	161329335	161329535	+	602.833374	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66003.0	NM_009452	22164.0	Mm.4994	NM_009452	ENSMUSG00000026700	Tnfsf4	Ath-1|Ath1|CD134L|OX-40L|Ox40l|TXGP1|Tnlg2b|Txgp1l|gp34	tumor necrosis factor (ligand) superfamily, member 4	protein-coding	1.79341550528788	2.00584618237298	2.27208885888829	1.75261641912145	1.8075888996938	1.49955520042088	2.46710100841973	1.60669029852426	-0.158252942843619	0.872035826226902	0.998431161219273
Merged-chr1-36309255-3	chr1	36309171	36309371	+	851.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290727, intron 1 of 5)	intron (NM_001290727, intron 1 of 5)	1538.0	NM_001172205	214855.0	Mm.34316	NM_145996	ENSMUSG00000037447	Arid5a	D430024K22Rik|Mrf1	AT rich interactive domain 5A (MRF1-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-44437963-4	chr11	44437863	44438063	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32585.0	NM_024475	79560.0	Mm.338784	NM_024475	ENSMUSG00000041231	Ublcp1	4930527B16Rik|8430435I17Rik|BC002236	ubiquitin-like domain containing CTD phosphatase 1	protein-coding	6.39706775847223	6.79651514141942	6.22977319824534	6.91750946396129	6.57557898332955	6.62567799466785	6.76985938905739	6.74871250198329	0.0757293712392142	0.710795709541166	0.998431161219273
Merged-chr15-57695801-7	chr15	57695755	57695955	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199449, intron 1 of 3)	CpG	1188.0	NM_199449	387609.0	Mm.36557	NM_199449	ENSMUSG00000071757	Zhx2	Afr-1|Afr1|Raf|mKIAA0854	zinc fingers and homeoboxes 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-58829917-2	chr7	58829817	58830017	+	686.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_009728)	TTS (NM_009728)	171715.0	NM_009728	11982.0	Mm.135129	NM_009728	ENSMUSG00000025324	Atp10a	Atp10c|pfatp	ATPase, class V, type 10A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56615545-2	chr17	56615445	56615645	+	623.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_028782, exon 14 of 18)	exon (NM_028782, exon 14 of 18)	2150.0	NM_018730	54217.0	Mm.11376	NM_018730	ENSMUSG00000057863	Rpl36	-	ribosomal protein L36	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-116176496-2	chr9	116176402	116176602	+	586.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-1139.0	NM_029575	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59643098-4	chr15	59642990	59643190	+	993.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5564.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129031615-4	chr4	129031516	129031716	+	999.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26655.0	NM_029219	75234.0	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-68434200-3	chr10	68434104	68434304	+	913.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028491, intron 7 of 7)	intron (NM_028491, intron 7 of 7)	107671.0	NM_028491	73287.0	Mm.141830	NM_028491	ENSMUSG00000019945	Cabcoco1	1700040L02Rik	ciliary associated calcium binding coiled-coil 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-137309330-2	chr7	137309230	137309430	+	697.333374	f1_balb.idr|f1_c57bl6.idr	exon (NM_010096, exon 5 of 16)	exon (NM_010096, exon 5 of 16)	5115.0	NM_001113415	13593.0	Mm.258708	NM_010096	ENSMUSG00000010476	Ebf3	3110018A08Rik|O/E-2|mKIAA4201	early B cell factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-78807591-3	chr11	78807496	78807696	+	799.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-18999.0	NM_001076681	66274.0	Mm.258932	NM_001076681	ENSMUSG00000072640	Lyrm9	1810012P15Rik	LYR motif containing 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-78821745-3	chr9	78821653	78821853	+	664.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	206207.0	NM_153098	235505.0	Mm.32955	NM_153098	ENSMUSG00000046186	Cd109	9930012E15Rik|AI480638|GARP	CD109 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-79208911-4	chr12	79208788	79208988	+	880.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030017)	promoter-TSS (NM_030017)	-25.0	NM_001313971	77974.0	Mm.274373	NM_030017	ENSMUSG00000021123	Rdh12	-	retinol dehydrogenase 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-58636761-4	chr11	58636652	58636852	+	974.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3713.0	NM_001039047	216781.0	Mm.339507	NM_001039047	ENSMUSG00000037124	Trim58	Gm16|Gm1783	tripartite motif-containing 58	protein-coding	3.00300529954824	3.89258064977933	4.51623802599145	3.99322053960784	4.65656032022243	4.64340702932314	2.13201839748769	4.28299793513929	0.368586344496459	0.537870545077034	0.953963493057627
Merged-chr11-43653936-3	chr11	43653838	43654038	+	710.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-28060.0	NM_027557	70802.0	Mm.397449	NM_027557	ENSMUSG00000044950	Pwwp2a	4631424J17Rik|AI891583|AU024105|D930040F23Rik	PWWP domain containing 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-57852873-4	chr1	57852754	57852954	+	918.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164566, intron 1 of 11)	intron (NM_001164566, intron 1 of 11)	7283.0	NM_001164566	67198.0	Mm.159989	NM_144882	ENSMUSG00000038305	Spats2l	2810022L02Rik|A230104H11Rik|AA987173|AI480531|AI842453|AW413586	spermatogenesis associated, serine-rich 2-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-143349174-4	chr6	143349075	143349275	+	800.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	103287.0	NR_027803	52285.0	Mm.354898	NM_001033129		D6Ertd474e	1700001I24Rik|AU023129	DNA segment, Chr 6, ERATO Doi 474, expressed	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-100439574-3	chr9	100439479	100439679	+	865.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46894.0	NM_001033543	213208.0	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	0.79257009220314	1.56447747959605	1.22004598192902	1.56816963932482	1.75156301227777	0.843993833535273	1.7419024045329	0.815249215954631	0.194014659396508	0.891183426696912	0.998431161219273
Merged-chr7-108935413-2	chr7	108935313	108935513	+	749.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025344, intron 1 of 7)	intron (NM_025344, intron 1 of 7)	998.0	NM_025344	66085.0	Mm.182962	NM_025344	ENSMUSG00000031029	Eif3f	0610037M02Rik|AA409853|Eif3s5	eukaryotic translation initiation factor 3, subunit F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-165650758-2	chr1	165650658	165650858	+	647.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038846, intron 5 of 5)	intron (NM_001038846, intron 5 of 5)	-16217.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-159935245-2	chr3	159935145	159935345	+	677.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_026582, exon 12 of 12)	3' UTR (NM_026582, exon 12 of 12)	95595.0	NM_001356350	68151.0	Mm.6766	NM_026582	ENSMUSG00000028173	Wls	5031439A09Rik|AI173978|AI987742|EVI|Gpr177	wntless WNT ligand secretion mediator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-72164613-2	chr5	72164513	72164713	+	837.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356612, intron 1 of 3)	L1M5|LINE|L1	3576.0	NM_001356611	27784.0	Mm.44223	NM_178599	ENSMUSG00000029213	Commd8	C77770|D5Buc26e	COMM domain containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-50829065-1	chr14	50828965	50829165	+	608.666687	f1_balb.idr	intron (NM_009351, intron 48 of 54)	intron (NM_009351, intron 48 of 54)	21149.0	NM_009632	11546.0	Mm.281482	NM_009632	ENSMUSG00000036023	Parp2	ADPRT-2|ARTD2|Adprt2|Adprtl2|Aspartl2|C78626|PARP-2|mPARP-2|pADPRT-2	poly (ADP-ribose) polymerase family, member 2	protein-coding	0.443598364309975	0.478039680490477	0.466951995520357	1.60866029355124	1.11757687882455	1.05976923652032	0.469412982119647	0.824648820559745	0.0224821056270338	0.989642055445241	0.998431161219273
Merged-chr15-76539762-2	chr15	76539662	76539862	+	884.6666869999999	f1_balb.idr|f1_c57bl6.idr	exon (NM_029643, exon 3 of 5)	exon (NM_029643, exon 3 of 5)	819.0	NM_029643	52710.0	Mm.28597	NM_029643	ENSMUSG00000022560	Slc52a2	2010003P03Rik|D15Ertd747e|GPCR42|Gpr172b|PAR2|mRFT1	solute carrier protein 52, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-26647057-4	chr2	26646964	26647164	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6820.0	NR_024068	72091.0	Mm.27103	NR_024068		Snhg7	2610002F03Rik|AI427062	small nucleolar RNA host gene 7	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83223496-4	chr11	83223380	83223580	+	970.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015519)	promoter-TSS (NR_015519)	-96.0	NR_015519	100043636.0	Mm.295569	NR_015519	ENSMUSG00000087107	AI662270	AW496474	expressed sequence AI662270	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-86980017-1	chr17	86979917	86980117	+	817.0	f1_c57bl6.idr	intron (NM_145491, intron 2 of 4)	MTC|LTR|ERVL-MaLR	16906.0	NM_145491	104215.0	Mm.826	NM_145491	ENSMUSG00000024143	Rhoq	Arhq|TC10A|Tc10	ras homolog family member Q	protein-coding	2.49921811865514	2.45849783189033	1.87055790465197	2.63713143103346	1.40563932605109	2.10678027868523	1.25305401669182	1.97194737966244	-1.71531805403038	0.07932355248879	0.428644619843852
Merged-chr2-27284328-2	chr2	27284228	27284428	+	910.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009500, intron 14 of 27)	intron (NM_009500, intron 14 of 27)	-37025.0	NM_138665	192166.0	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-153996872-3	chr1	153996761	153996961	+	751.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	96932.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-151108703-3	chr5	151108626	151108826	+	876.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153382, intron 1 of 13)	intron (NR_153382, intron 1 of 13)	81467.0	NM_001163493	243362.0	Mm.209272	NM_146258	ENSMUSG00000016128	Stard13	DLC2|GT650	StAR-related lipid transfer (START) domain containing 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-58612902-2	chr1	58612802	58613002	+	622.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	26505.0	NM_025597	66495.0	Mm.2033	NM_025597	ENSMUSG00000026032	Ndufb3	2700033I16Rik|CI-B12	NADH dehydrogenase (ubiquinone) 1 beta subcomplex 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-34076519-2	chr11	34076419	34076619	+	628.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010696, intron 10 of 20)	intron (NM_010696, intron 10 of 20)	22035.0	NR_155520	76874.0	Mm.437529	NR_155520		4930469K13Rik	-	RIKEN cDNA 4930469K13 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-109238351-2	chr3	109238256	109238456	+	607.5	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-102327.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	1.09926263809858	0.800458287641317	1.70092887585698	0.748633298382748	1.39160275561462	0.574256706838105	0.562178238094392	0.551701245891345	-1.30328911115681	0.411929649700219	0.894597257730009
Merged-chr11-96907941-2	chr11	96907841	96908041	+	773.166626	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001308183, exon 13 of 13)	3' UTR (NM_001308183, exon 13 of 13)	8573.0	NM_001308183	80280.0	Mm.28297	NM_030248	ENSMUSG00000018669	Cdk5rap3	1810007E24Rik|BC002318|C53|C81486|HSF-27|IC53|LZAP|MST016	CDK5 regulatory subunit associated protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-119977464-1	chr4	119977364	119977564	+	566.0	f1_c57bl6.idr	intron (NM_010657, intron 1 of 8)	intron (NM_010657, intron 1 of 8)	162786.0	NM_010657	16656.0	Mm.302758	NM_010657	ENSMUSG00000028634	Hivep3	2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3	human immunodeficiency virus type I enhancer binding protein 3	protein-coding	-1.26959930736558	-1.07601107343002	-1.25215172459449	-1.26079773200946	-1.26914647640648	-1.23934523325413	-1.24976896878841	-0.82517731904646	1.29013408846881	0.699782150978711	1
Merged-chr11-6526857-3	chr11	6526757	6526957	+	790.866638	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045893, intron 2 of 3)	B2_Mm2|SINE|B2	1903.0	NR_045893	100041286.0	Mm.459507	NR_045893	ENSMUSG00000085156	Snhg15	Gm11974	small nucleolar RNA host gene 15	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-70739103-2	chr17	70739003	70739203	+	755.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347411, intron 9 of 14)	B1_Mus2|SINE|Alu	107674.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122471135-2	chr8	122471035	122471235	+	830.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033142, intron 1 of 5)	MT2B1|LTR|ERVL	4929.0	NM_001033142	68718.0	Mm.34356	NM_001033142	ENSMUSG00000014470	Rnf166	1110031E24Rik|AW555115|Zfp313l	ring finger protein 166	protein-coding	-0.152737884776374	0.574909349041991	-0.137817015868932	0.927782874588513	-0.151335493349923	-0.129093299230161	-0.136237020202551	-0.142403424315771	-4.15932475195646	0.0723397583557477	1
Merged-chr1-152513713-2	chr1	152513613	152513813	+	656.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	111504.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101397367-2	chr7	101397267	101397467	+	982.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001040111, intron 16 of 33)	intron (NM_001040111, intron 16 of 33)	2979.0	NM_198096	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-142858968-4	chr2	142858856	142859056	+	870.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355123, intron 3 of 26)	intron (NM_001355123, intron 3 of 26)	42508.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27427105-4	chr2	27426979	27427179	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_133905, exon 1 of 30)	non-coding (NR_133905, exon 1 of 30)	529.0	NR_133905	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-6337255-4	chr15	6337177	6337377	+	899.2333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001008702, intron 1 of 13)	intron (NM_001008702, intron 1 of 13)	37488.0	NM_001008702	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-67581859-2	chr3	67581759	67581959	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025813)	promoter-TSS (NM_025813)	-909.0	NM_025813	66868.0	Mm.491153	NM_025813	ENSMUSG00000027775	Mfsd1	1200003O06Rik	major facilitator superfamily domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83413242-5	chr6	83413138	83413338	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347313, intron 3 of 11)	intron (NM_001347313, intron 3 of 11)	-12136.0	NR_105793	102465194.0		NR_105793	ENSMUSG00000099045	Mir6374	Gm27292|mmu-mir-6374	microRNA 6374	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-38494026-3	chr5	38493934	38494134	+	804.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145559, intron 1 of 10)	ORR1C1|LTR|ERVL-MaLR	8118.0	NM_145559	117591.0	Mm.260137	NM_145559	ENSMUSG00000005107	Slc2a9	Glut9|SLC2A9B|SLC2a9A	solute carrier family 2 (facilitated glucose transporter), member 9	protein-coding	2.2154957942364	2.5186077678861	1.22371079112193	1.38336275579808	1.72268167043992	1.00602764112127	0.982828898898404	1.69557968589244	-1.57926248448661	0.188679126413427	0.667146596763177
Merged-chr17-12990926-4	chr17	12990820	12991020	+	983.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175394, intron 1 of 5)	B3|SINE|B2	1339.0	NM_001113533	60532.0	Mm.275521	NM_175394	ENSMUSG00000060475	Wtap	2810408K05Rik|9430038B09Rik	Wilms tumour 1-associating protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139456845-4	chr5	139456744	139456944	+	993.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028469, intron 1 of 4)	PB1D10|SINE|Alu	3690.0	NM_028469	73212.0	Mm.84294	NM_028469	ENSMUSG00000053553	3110082I17Rik	AW411904	RIKEN cDNA 3110082I17 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100735659-4	chr11	100735530	100735730	+	785.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305003, intron 1 of 5)	intron (NM_001305003, intron 1 of 5)	2585.0	NM_024456	19345.0	Mm.29829	NM_024456	ENSMUSG00000019173	Rab5c	AI326010|Rabl	RAB5C, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-138140495-4	chr6	138140388	138140588	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019946)	promoter-TSS (NM_019946)	-39.0	NM_001361308	56615.0	Mm.14796	NM_019946	ENSMUSG00000008540	Mgst1	1500002K10Rik|Gst	microsomal glutathione S-transferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117050956-4	chr8	117050873	117051073	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029686, intron 16 of 42)	intron (NM_029686, intron 16 of 42)	31476.0	NM_029686	76645.0	Mm.159753	NM_029686	ENSMUSG00000034416	Pkd1l2	1700126L06Rik	polycystic kidney disease 1 like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64425038-3	chr5	64424978	64425178	+	793.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A0-int|LTR|ERVL-MaLR	42864.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-8575536-4	chr11	8575460	8575660	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 4 of 30)	intron (NM_001083587, intron 4 of 30)	88975.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-5011827-4	chr16	5011745	5011945	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133185, intron 4 of 10)	intron (NM_133185, intron 4 of 10)	1708.0	NM_133185	66049.0	Mm.27792	NM_133185	ENSMUSG00000022540	Rogdi	0610011C19Rik|AU020118|C76152|Lzf	rogdi homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76009578-4	chr15	76009525	76009725	+	736.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001168253)	promoter-TSS (NM_001168253)	-127.0	NM_001168253	105732.0	Mm.267178	NM_134087	ENSMUSG00000046761	Fam83h	AA409316	family with sequence similarity 83, member H	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-72361429-4	chr8	72361342	72361542	+	843.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007944, intron 21 of 23)	MTC|LTR|ERVL-MaLR	42380.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-47674485-4	chr8	47674384	47674584	+	968.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023503, intron 1 of 1)	CpG	675.0	NM_023503	69260.0	Mm.430733	NM_023503	ENSMUSG00000063049	Ing2	2810011M06Rik|Ing1l|Ing2b|P33ING2	inhibitor of growth family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-116945850-3	chr8	116945674	116945874	+	682.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177700, intron 1 of 3)	intron (NM_177700, intron 1 of 3)	2381.0	NM_177700	234776.0	Mm.259736	NM_177700	ENSMUSG00000047388	Atmin	Asciz|gpg6|mKIAA0431	ATM interactor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-8896354-2	chr19	8896254	8896454	+	570.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_176843, exon 2 of 2)	exon (NM_176843, exon 2 of 2)	-1703.0	NM_001293621	14376.0	Mm.3196	NM_008060	ENSMUSG00000071650	Ganab	AU042638|G2an|GluII|mKIAA0088	alpha glucosidase 2 alpha neutral subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-122886063-4	chr4	122885990	122886190	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358036)	promoter-TSS (NM_001358036)	-14.0	NM_001358036	12331.0	Mm.8687	NM_007598	ENSMUSG00000028656	Cap1	-	CAP, adenylate cyclase-associated protein 1 (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-22784671-3	chr11	22784593	22784793	+	582.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	75042.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-71102529-4	chr1	71102420	71102620	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007525, intron 1 of 10)	CpG	452.0	NM_007525	12021.0	Mm.10764	NM_007525	ENSMUSG00000026196	Bard1	-	BRCA1 associated RING domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-104397461-2	chr7	104397395	104397595	+	610.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MYSERV-int|LTR|ERVK	-38849.0	NM_175648	244183.0	Mm.347647	NM_175648	ENSMUSG00000052749	Trim30b	A530023O14Rik|Trim30-1	tripartite motif-containing 30B	protein-coding	2.34131879089801	3.44535675735855	2.94822275308077	2.61892678774085	3.70164130514745	3.28844248376713	3.08043061615171	3.54282265541232	0.899655288792448	0.150704205185339	0.602589676101411
Merged-chr18-67133646-3	chr18	67133462	67133662	+	935.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010307)	promoter-TSS (NM_010307)	2.0	NM_010307	14680.0	Mm.440746	NM_010307	ENSMUSG00000024524	Gnal	2610011C15Rik|9630020G10Rik|Galphaolf|Gna10|Golf	guanine nucleotide binding protein, alpha stimulating, olfactory type	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-124765229-2	chr2	124765129	124765329	+	597.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	111648.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-98985480-2	chr15	98985380	98985580	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045991)	promoter-TSS (NR_045991)	-485.0	NR_045991	75951.0	Mm.441657	NR_045991	ENSMUSG00000097587	4930578M01Rik	3010001K12Rik	RIKEN cDNA 4930578M01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-97567964-3	chr1	97567868	97568068	+	772.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	93708.0	NM_001355074	52392.0	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72939439-2	chr6	72939280	72939480	+	664.950012	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18852.0	NM_001039392	19240.0	Mm.3532	NM_025284	ENSMUSG00000079523	Tmsb10	Ptmb10|Tb10	thymosin, beta 10	protein-coding	1.01171502258295	1.11907201719708	0.85909434953204	1.73499466139978	0.825409356134912	1.49571656693048	1.90877965952665	1.92741069713218	1.29081422220459	0.330181484950783	0.83197671091297
Merged-chr13-21940455-4	chr13	21940353	21940553	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4641.0	NM_183014	193452.0	Mm.187446	NM_183014	ENSMUSG00000006720	Zfp184	4930500C15Rik	zinc finger protein 184 (Kruppel-like)	protein-coding	5.13705035001289	4.78166889207357	5.41609843514591	4.55697692983198	4.223836229146	4.81410551155976	5.30930177991827	4.14149792960958	-0.381030391816865	0.324718215344114	0.827392680372739
Merged-chr5-134226005-2	chr5	134225905	134226105	+	596.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010876, intron 5 of 10)	B2_Mm1a|SINE|B2	3620.0	NM_001286037	17969.0	Mm.425296	NM_010876	ENSMUSG00000015950	Ncf1	NCF-47K|NOXO2|Ncf-1|p47-phox|p47<phox>|p47phox	neutrophil cytosolic factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-3962069-2	chr11	3961969	3962169	+	713.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1906.0	NM_022889	64934.0	Mm.28659	NM_022889	ENSMUSG00000020430	Pes1	-	pescadillo ribosomal biogenesis factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91929442-2	chr16	91929342	91929542	+	757.583313	f1_balb.idr|f1_c57bl6.idr	intron (NM_138597, intron 2 of 6)	intron (NM_138597, intron 2 of 6)	2188.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-3425567-2	chr2	3425467	3425667	+	608.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001302674, intron 2 of 13)	L1ME3|LINE|L1	1436.0	NM_001302684	227525.0	Mm.23483	NM_146114	ENSMUSG00000026648	Dclre1c	9930121L06Rik|AI661365|Art|Snm1l	DNA cross-link repair 1C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-51424888-4	chr13	51424793	51424993	+	748.820801	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16275.0	NM_010101	13610.0	Mm.136736	NM_010101	ENSMUSG00000067586	S1pr3	AI132464|Edg3|Lpb3|S1p3	sphingosine-1-phosphate receptor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-53597717-4	chr10	53597611	53597811	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025541, intron 1 of 3)	CpG	750.0	NM_025541	66403.0	Mm.272989	NM_025541	ENSMUSG00000019857	Asf1a	2310079C17Rik|C79052	anti-silencing function 1A histone chaperone	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-121402569-1	chr10	121402469	121402669	+	626.0	f1_c57bl6.idr	Intergenic	Intergenic	37479.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-113153388-3	chr12	113153325	113153525	+	740.644409	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007763, intron 2 of 4)	intron (NM_007763, intron 2 of 4)	1413.0	NM_007763	12925.0	Mm.272368	NM_007763	ENSMUSG00000006360	Crip1	CRHP|CRP1|Crip	cysteine-rich protein 1 (intestinal)	protein-coding	2.73705529526608	2.95895979169989	3.36449998808049	2.89056958613409	2.86456273991861	4.09705237004142	3.21099059713487	3.44107775057658	0.777162600081748	0.206005783684572	0.693707835750198
Merged-chr15-6603628-2	chr15	6603528	6603728	+	830.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_155272)	TTS (NR_155272)	23781.0	NM_011815	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-65694343-2	chr18	65694305	65694505	+	960.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-3863.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-164961225-2	chr2	164961172	164961372	+	695.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355481, intron 1 of 24)	intron (NM_001355481, intron 1 of 24)	426.0	NM_001355480	57138.0	Mm.252987	NM_020333	ENSMUSG00000017740	Slc12a5	KCC2|mKIAA1176	solute carrier family 12, member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-50396380-4	chr16	50396260	50396460	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027444, intron 2 of 16)	intron (NM_027444, intron 2 of 16)	36029.0	NM_027444	70508.0	Mm.28940	NM_027444	ENSMUSG00000022641	Bbx	5530401J07Rik|5730403O13Rik	bobby sox HMG box containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-66511844-4	chr9	66511743	66511943	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175206, exon 2 of 2)	exon (NM_175206, exon 2 of 2)	2750.0	NM_175206	74165.0	Mm.297998	NM_175206	ENSMUSG00000050503	Fbxl22	1110004B15Rik	F-box and leucine-rich repeat protein 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-95837353-2	chr16	95837253	95837453	+	685.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_040485, intron 3 of 3)	intron (NR_040485, intron 3 of 3)	61360.0	NR_040485	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-11450064-4	chr10	11449958	11450158	+	731.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010146, intron 3 of 3)	intron (NM_010146, intron 3 of 3)	106613.0	NM_010146	13853.0	Mm.89946	NM_010146	ENSMUSG00000055493	Epm2a	TG-B|Tg(TcraK,TcrbK)TG-BFlv	epilepsy, progressive myoclonic epilepsy, type 2 gene alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-98337288-2	chr7	98337188	98337388	+	596.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-16080.0	NM_001360615	66190.0	Mm.334041	NM_025408	ENSMUSG00000030760	Acer3	1110057L18Rik|5430429L08Rik|AV015045|Phca|aPHC	alkaline ceramidase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-21707231-4	chr14	21707232	21707432	+	939.1726070000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013826, intron 1 of 3)	intron (NM_001013826, intron 1 of 3)	7244.0	NM_001013826	435391.0	Mm.295860	NM_001013826	ENSMUSG00000063821	Dupd1	EG435391	dual specificity phosphatase and pro isomerase domain containing 1	protein-coding	-1.53362919331644	-1.50201671710775	-1.51157659084044	-1.08120497225282	-1.53141005593807	-1.49994505258991	-1.50941244497383	-1.51802371459528	-1.94474658522739	0.577200604274218	1
Merged-chr15-76289462-2	chr15	76289362	76289562	+	630.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028852, intron 4 of 4)	B1F|SINE|Alu	1506.0	NR_037240	100526548.0		NR_037240	ENSMUSG00000093169	Mir3079	mmu-mir-3079	microRNA 3079	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-92829057-2	chr13	92828957	92829157	+	715.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15730.0	NM_001162945	382793.0	Mm.296770	NM_001162945	ENSMUSG00000021704	Mtx3	4930470O13Rik|AA409304|AI853833|AU067765|EG624619|Gm1194|Gm6514	metaxin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-97824904-4	chr3	97824820	97825020	+	899.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039376, intron 3 of 46)	intron (NM_001039376, intron 3 of 46)	-56906.0	NR_110360	83679.0	Mm.129840	NM_031401	ENSMUSG00000038170	Pde4dip	4732458A06Rik|9430063L05Rik|C87016|D130016K21Rik|D3Bwg1078e|Usmg4|mKIAA0454	phosphodiesterase 4D interacting protein (myomegalin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-128369362-2	chr8	128369262	128369462	+	849.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358959, intron 2 of 16)	B4A|SINE|B4	10121.0	NR_035436	100316680.0		NR_035436	ENSMUSG00000084523	Mir1903	Mirn1903|mmu-mir-1903	microRNA 1903	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-110096704-2	chr7	110096604	110096804	+	729.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-25355.0	NM_001355058	22390.0	Mm.287173	NM_009516	ENSMUSG00000031016	Wee1	Wee1A	WEE 1 homolog 1 (S. pombe)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-90216122-4	chr7	90216015	90216215	+	943.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49317.0	NM_029256	75338.0	Mm.487222	NM_029256	ENSMUSG00000030617	Ccdc83	4930549K11Rik|4930554C01Rik|4932423M01Rik	coiled-coil domain containing 83	protein-coding	0.608022095500719	0.815597502451642	0.623251503633269	1.38647196119832	1.08213829338135	0.820904625760093	0.624899292162199	1.39450170027986	0.532040119610074	0.743828850645179	0.998431161219273
Merged-chr7-28767846-2	chr7	28767746	28767946	+	936.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_022432, intron 2 of 15)	intron (NM_022432, intron 2 of 15)	1094.0	NM_001122766	64383.0	Mm.272443	NM_022432	ENSMUSG00000015149	Sirt2	5730427M03Rik|SIR2L2|Sir2l	sirtuin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-26477809-2	chr2	26477709	26477909	+	942.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008714, intron 12 of 33)	intron (NM_008714, intron 12 of 33)	-7690.0	NR_105962	102465602.0		NR_105962	ENSMUSG00000098548	Mir6996	Gm27531|mmu-mir-6996	microRNA 6996	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-111540887-1	chr8	111540787	111540987	+	571.0	f1_balb.idr	intron (NM_001168623, intron 1 of 4)	intron (NM_001168623, intron 1 of 4)	2544.0	NM_001168623	170737.0	Mm.271578	NM_133206	ENSMUSG00000033545	Znrf1	B830022L21Rik|Rnf42|Zrfp1|nin283	zinc and ring finger 1	protein-coding	-1.50562870325248	-1.47332349272993	-1.48309285503692	-1.49111770011041	-1.50336093720614	-1.31748976241677	-1.48088128554894	-1.18224791918429	2.11869983817861	0.537114300474197	1
Merged-chr6-124731675-2	chr6	124731575	124731775	+	662.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077705, intron 3 of 15)	intron (NM_001077705, intron 3 of 15)	1479.0	NM_013545	15170.0	Mm.271799	NM_013545	ENSMUSG00000004266	Ptpn6	70Z-SHP|Hcph|PTPTY-42|Ptp1C|SH-PTP1|SHP-1|hcp|me	protein tyrosine phosphatase, non-receptor type 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127184223-2	chr7	127184123	127184323	+	791.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11854.0	NM_001285907	70233.0	Mm.28050	NM_027353	ENSMUSG00000042502	Cd2bp2	1500011B02Rik|2410024K20Rik|AW048183	CD2 antigen (cytoplasmic tail) binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-99039979-4	chr11	99039888	99040088	+	744.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1256.0	NM_010517	16010.0	Mm.233799	NM_010517	ENSMUSG00000017493	Igfbp4	AI875747|Deb2|IBP-4|IGFBP-4	insulin-like growth factor binding protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-60281216-2	chr10	60281116	60281316	+	957.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011179, intron 1 of 14)	ID4_|SINE|ID	-3245.0	NM_001146124	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-4882031-8	chr2	4881964	4882164	+	994.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175400, intron 1 of 8)	CpG	500.0	NM_175400	109079.0	Mm.34329	NM_175400	ENSMUSG00000026662	Sephs1	1110046B24Rik|AA589574|AI505014|AW111620|SELD|SPS|SPS1	selenophosphate synthetase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84217070-1	chr8	84216970	84217170	+	1000.0	f1_balb.idr	intron (NM_172503, intron 12 of 13)	intron (NM_172503, intron 12 of 13)	-8163.0	NR_037294	100526528.0		NR_037294	ENSMUSG00000105458	Mir3074-2	mir-3074-2|mmu-mir-3074-2	microRNA 3074-2	ncRNA	1.11348844863825	1.4053358842328	1.6505426972701	0.693302487586761	0.679652346566217	1.41803454051189	0.912995449168955	0.887874332281983	-1.10443594968452	0.444035642496778	0.912265842646861
Merged-chr14-63109059-2	chr14	63108959	63109159	+	906.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-13403.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-55970320-2	chr17	55970220	55970420	+	651.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159523)	promoter-TSS (NM_001159523)	-162.0	NM_001159523	20420.0	Mm.20908	NM_009168	ENSMUSG00000039154	Shd	AI413439	src homology 2 domain-containing transforming protein D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135964589-2	chr5	135964489	135964689	+	875.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001160366, intron 7 of 10)	intron (NM_001160366, intron 7 of 10)	9887.0	NM_001160366	109267.0	Mm.332750	NM_001160366	ENSMUSG00000029699	Ssc4d	C330016E03Rik|S4D-SRCRB|SRCRB-S4D|Srcrb4d	scavenger receptor cysteine rich family, 4 domains	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-59204335-5	chr3	59204198	59204398	+	720.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177855, intron 15 of 43)	intron (NM_177855, intron 15 of 43)	6584.0	NM_028808	74191.0	Mm.90067	NM_028808	ENSMUSG00000036362	P2ry13	2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174	purinergic receptor P2Y, G-protein coupled 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-34261288-2	chr11	34261188	34261388	+	617.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_033374, intron 38 of 51)	L2a|LINE|L2	-53199.0	NM_023907	14233.0	Mm.32926	NM_023907	ENSMUSG00000047861	Foxi1	5830401E05Rik|FREAC6|Fkh10|HFH-3|Hfh3	forkhead box I1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-23955885-2	chr18	23955785	23955985	+	711.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027007, intron 1 of 3)	B1_Mur2|SINE|Alu	1197.0	NM_027007	69256.0	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-63871436-2	chr17	63871336	63871536	+	697.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037997, intron 1 of 18)	ORR1D1|LTR|ERVL-MaLR	-6630.0	NM_001286415	14158.0	Mm.23039	NM_008000	ENSMUSG00000000127	Fer	AV082135|C330004K01Rik|Fert|Fert2	fer (fms/fps related) protein kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-31146255-2	chr8	31146196	31146396	+	724.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4020.0	NM_144927	234138.0	Mm.349800	NM_144927	ENSMUSG00000031577	Tti2	-	TELO2 interacting protein 2	protein-coding	-0.762815510770208	-0.888810099978931	-0.89605646336994	-0.378435724824249	-0.901135071873698	-0.886197275572406	-0.895452375767285	-0.735451535779862	-1.91440903337127	0.505076966137192	1
Merged-chr14-19417855-4	chr14	19417761	19417961	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GSAT_MM|Satellite|Satellite	184726.0	NM_001024706	432825.0	Mm.327147	NM_001024706	ENSMUSG00000095024	Gm5458	EG432825	predicted gene 5458	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-79293186-4	chr11	79293089	79293289	+	925.775024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38494.0	NM_019653	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-96341889-2	chr11	96341789	96341989	+	591.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001079869, intron 2 of 3)	intron (NM_001079869, intron 2 of 3)	-1880.0	NM_010458	15410.0	Mm.342481	NM_010458	ENSMUSG00000048763	Hoxb3	Hox-2.7	homeobox B3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-70877120-2	chr17	70877020	70877220	+	571.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-16520.0	NR_035427	100316676.0		NR_035427	ENSMUSG00000080468	Mir1195	Mirn1195|mmu-mir-1195	microRNA 1195	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-66515891-2	chr16	66515791	66515991	+	595.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR26C_MM|LTR|ERVK	-141227.0	NR_040512	75501.0	Mm.394300	NR_040512	ENSMUSG00000092599	1700010K23Rik	-	RIKEN cDNA 1700010K23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-156203282-2	chr2	156203190	156203390	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172674, intron 1 of 17)	intron (NM_172674, intron 1 of 17)	6643.0	NM_172674	228829.0	Mm.427078	NM_172674	ENSMUSG00000038116	Phf20	6820402O20Rik	PHD finger protein 20	protein-coding	-0.709481344209766	-0.699394781296776	-0.702705588794164	-0.705255858039922	-0.229882953110399	-0.198199497360788	-0.701975877535185	-0.704810595027866	3.25607503740857	0.257127953433642	1
Merged-chr4-147417319-2	chr4	147417199	147417399	+	933.099976	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039209, intron 1 of 2)	intron (NM_001039209, intron 1 of 2)	-135978.0	NM_001014397	433804.0	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154	zinc finger protein 985	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-37732524-4	chr6	37732410	37732610	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-138301.0	NM_001272064	21848.0	Mm.41063	NM_145076	ENSMUSG00000029833	Trim24	A130082H20Rik|AI447469|D430004I05Rik|TIF1|TIF1-alpha|TIF1alpha|Tif1a	tripartite motif-containing 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-107922982-2	chr4	107922882	107923082	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009949, intron 1 of 4)	B1_Mur3|SINE|Alu	607.0	NM_009949	12896.0	Mm.307620	NM_009949	ENSMUSG00000028607	Cpt2	AI323697|CPTII	carnitine palmitoyltransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97838426-4	chr11	97838328	97838528	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010688, exon 7 of 7)	3' UTR (NM_010688, exon 7 of 7)	-2352.0	NM_001080935	68127.0	Mm.110270	NM_001080935	ENSMUSG00000050538	B230217C12Rik	AI840637	RIKEN cDNA B230217C12 gene	protein-coding	4.67940654746391	5.30826387021052	4.05201533904882	3.93585066341109	4.60833568796433	5.51696648365917	4.08407204761578	3.95662532201872	0.100243994659313	0.831340005543063	0.998431161219273
Merged-chr10-122735393-6	chr10	122735219	122735419	+	943.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110218, intron 1 of 9)	intron (NM_001110218, intron 1 of 9)	56004.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-24526342-2	chr5	24526242	24526442	+	689.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_015739, exon 1 of 2)	exon (NM_015739, exon 1 of 2)	506.0	NM_015739	231044.0	Mm.246596	NM_015739	ENSMUSG00000067724	Gbx1	Gbx-1	gastrulation brain homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-124926893-1	chr8	124926793	124926993	+	637.0	f0_balb.idr	intron (NM_053207, intron 1 of 4)	intron (NM_053207, intron 1 of 4)	22361.0	NM_053207	112405.0	Mm.140619	NM_053207	ENSMUSG00000031987	Egln1	AI503754|C1orf12|HIF-PH2|HPH-2|Hif-p4h-2|ORF13|Phd2|SM-20	egl-9 family hypoxia-inducible factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-107922579-2	chr4	107922479	107922679	+	994.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_009949, intron 1 of 4)	intron (NM_009949, intron 1 of 4)	1010.0	NM_009949	12896.0	Mm.307620	NM_009949	ENSMUSG00000028607	Cpt2	AI323697|CPTII	carnitine palmitoyltransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21135704-4	chr9	21135592	21135792	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4417.0	NM_001205312	54721.0	Mm.20249	NM_018793	ENSMUSG00000032175	Tyk2	JTK1	tyrosine kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-51270908-2	chr6	51270808	51271008	+	756.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029719)	promoter-TSS (NR_029719)	-998.0	NR_029719	387166.0		NR_029719	ENSMUSG00000065505	Mir148a	Mirn148|Mirn148a|mir-148a	microRNA 148a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-65342274-3	chr2	65342154	65342354	+	825.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177074, intron 7 of 11)	intron (NM_177074, intron 7 of 11)	21772.0	NM_177074	320106.0	Mm.227703	NM_177074	ENSMUSG00000061171	Slc38a11	9330158F14Rik	solute carrier family 38, member 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-66873588-3	chr10	66873487	66873687	+	903.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46797.0	NR_138560	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-38107651-4	chr7	38107541	38107741	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007633)	promoter-TSS (NM_007633)	-151.0	NM_007633	12447.0	Mm.16110	NM_007633	ENSMUSG00000002068	Ccne1	AW538188|CycE1	cyclin E1	protein-coding	5.105609017949	5.85255728471766	5.91651461149707	5.16085713671123	5.44814534336654	5.93639109873901	5.86734008316735	5.00938916300641	0.0621596758743072	0.841947751358198	0.998431161219273
Merged-chr1-72211097-2	chr1	72210997	72211197	+	648.599976	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357488, intron 1 of 5)	intron (NM_001357488, intron 1 of 5)	1210.0	NM_001005423	381269.0	Mm.422636	NM_001005423	ENSMUSG00000039395	Mreg	Gm974|Wdt2|dsu	melanoregulin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-106912299-2	chr4	106912213	106912413	+	872.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198438, intron 1 of 16)	CpG	843.0	NM_023672	72475.0	Mm.195635	NM_023672	ENSMUSG00000061887	Ssbp3	2610021L12Rik|2610200M23Rik|5730488C10Rik|AI854733|AW551939|LAST|SSDP1	single-stranded DNA binding protein 3	protein-coding	1.88553818666722	1.8856632527462	1.34616731184356	1.31736531201299	1.90148399701924	1.89981356729909	2.25364883845528	1.3224466250855	0.745968284427328	0.483976204041934	0.931207887927275
Merged-chr2-69635214-4	chr2	69635115	69635315	+	984.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12040.0	NM_028284	72569.0	Mm.252136	NM_028284	ENSMUSG00000063145	Bbs5	1700049I01Rik|2700023J09Rik	Bardet-Biedl syndrome 5 (human)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80679413-2	chr10	80679313	80679513	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3120.0	NM_021462	17347.0	Mm.42126	NM_021462	ENSMUSG00000020190	Mknk2	2010016G11Rik|Gprk7|Mnk2	MAP kinase-interacting serine/threonine kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-46460885-2	chr11	46460785	46460985	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134250, intron 3 of 6)	intron (NM_134250, intron 3 of 6)	5954.0	NM_134250	171285.0	Mm.72168	NM_134250	ENSMUSG00000020399	Havcr2	TIM-3|Tim3|Timd3	hepatitis A virus cellular receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-148046371-3	chr2	148046219	148046419	+	723.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291067)	promoter-TSS (NM_001291067)	-371.0	NM_001291065	15376.0	Mm.938	NM_010446	ENSMUSG00000037025	Foxa2	HNF3-beta|HNF3beta|Hnf-3b|Hnf3b|Tcf-3b|Tcf3b	forkhead box A2	protein-coding	1.34607778586176	1.22233739631459	2.4172387291266	2.51137203570259	1.53653102133275	2.05448834996312	2.52612637083236	1.92078423072194	0.0924922932262017	0.929627886901421	0.998431161219273
Merged-chr13-19395304-4	chr13	19395199	19395399	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347485, intron 1 of 7)	(A)n|Simple_repeat|Simple_repeat	514.0	NM_024270	76205.0	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43495673-2	chr4	43495573	43495773	+	589.166626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001013377)	TTS (NM_001013377)	2308.0	NM_001037913	622404.0	Mm.289109	NM_001037913	ENSMUSG00000028461	Ccdc107	-	coiled-coil domain containing 107	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133690442-4	chr4	133690326	133690526	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080819, intron 11 of 19)	intron (NM_001080819, intron 11 of 19)	-17260.0	NM_001356466	230801.0	Mm.217004	NM_178698	ENSMUSG00000043257	Pigv	B330013B03|D430024F16Rik	phosphatidylinositol glycan anchor biosynthesis, class V	protein-coding	3.01835574980091	3.46763744827924	3.68938751338195	2.78414922216863	1.20633896673447	2.65358602541556	1.32539894115431	1.56934180373125	-2.96523002699236	0.000862052488532643	0.0171429377194718
Merged-chr4-136172192-4	chr4	136172095	136172295	+	899.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177733)	promoter-TSS (NM_177733)	-79.0	NM_177733	242705.0	Mm.307932	NM_177733	ENSMUSG00000018983	E2f2	E2F-2	E2F transcription factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-25809069-3	chr17	25808961	25809161	+	783.733337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164225)	promoter-TSS (NM_001164225)	-24.0	NM_001164225	214931.0	Mm.152289	NM_001164225	ENSMUSG00000025738	Fbxl16	BC042620|Scirr1	F-box and leucine-rich repeat protein 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-31899220-3	chr11	31899135	31899335	+	574.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290678, intron 2 of 7)	intron (NM_001290678, intron 2 of 7)	28295.0	NM_026252	67579.0	Mm.339792	NM_026252	ENSMUSG00000020300	Cpeb4	Cpe-bp4|Cpeb-4|mCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding	-1.84362945061595	-1.81329140012928	-1.67810947190254	-1.83000206547234	-1.84149977556685	-1.81130325271815	-1.67603257143677	-1.82865309133977	0.037684011990387	0.991491645451152	1
Merged-chr12-3365780-2	chr12	3365680	3365880	+	998.833374	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_008445, exon 1 of 8)	5' UTR (NM_008445, exon 1 of 8)	648.0	NM_008445	16570.0	Mm.7688	NM_008445	ENSMUSG00000020668	Kif3c	mKIAA4058	kinesin family member 3C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152813855-4	chr1	152813780	152813980	+	949.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010877, intron 3 of 15)	RLTR28|LTR|ERVL	13727.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-56727357-4	chr19	56727243	56727443	+	999.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4971.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-128971263-4	chr4	128971162	128971362	+	951.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8807.0	NM_001301841	242669.0	Mm.215814	NM_172875	ENSMUSG00000028789	Azin2	4933429I20Rik|Adc|Azi2|B930082O19|ODC-p|Odcp	antizyme inhibitor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53086851-2	chr4	53086751	53086951	+	911.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 11 of 49)	intron (NM_013454, intron 11 of 49)	73044.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-100730993-4	chr13	100730884	100731084	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009874)	promoter-TSS (NM_009874)	-42.0	NM_009874	12572.0	Mm.259718	NM_009874	ENSMUSG00000069089	Cdk7	AI323415|AI528512|C230069N13|Cdkn7|Crk4	cyclin-dependent kinase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117502320-3	chr8	117502194	117502394	+	622.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172285, intron 1 of 32)	intron (NM_172285, intron 1 of 32)	4019.0	NM_172285	234779.0	Mm.192699	NM_172285	ENSMUSG00000034330	Plcg2	PLC-gamma-2|PLCgamma2|Plcg-2	phospholipase C, gamma 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-32458185-2	chr16	32458085	32458285	+	703.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_001163160, intron 3 of 8)	intron (NM_001163160, intron 3 of 8)	26955.0	NM_001163160	13026.0	Mm.98775	NM_009981	ENSMUSG00000005615	Pcyt1a	CTalpha|Cctalpha|Ctpct|Cttalpha	phosphate cytidylyltransferase 1, choline, alpha isoform	protein-coding	1.00415592245267	0.686806589386817	1.2722016508863	2.01198602325123	0.635207254326323	1.94878286206041	0.673223389445525	0.88754234380916	-0.544239349313543	0.712268396085158	0.998431161219273
Merged-chr19-11604819-4	chr19	11604722	11604922	+	986.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026835)	promoter-TSS (NM_026835)	-18.0	NM_026835	68774.0	Mm.290390	NM_026835	ENSMUSG00000024679	Ms4a6d	1110058E16Rik|AI447446|Ms4a11	membrane-spanning 4-domains, subfamily A, member 6D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-84670035-2	chr2	84669935	84670135	+	673.333374	f1_balb.idr|f1_c57bl6.idr	exon (NM_001037279, exon 3 of 4)	exon (NM_001037279, exon 3 of 4)	673.0	NM_001033166	72657.0	Mm.259293	NM_001033166	ENSMUSG00000076437	Selenoh	2700094K13Rik|Selh	selenoprotein H	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-103437832-4	chr12	103437732	103437932	+	876.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194067, intron 4 of 5)	intron (NM_194067, intron 4 of 5)	3643.0	NM_194069	52668.0	Mm.2121	NM_026790	ENSMUSG00000064215	Ifi27	1110013J02Rik|2900026P10Rik|D12Ertd647e|ISG12a|Ifi27l1	interferon, alpha-inducible protein 27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-86487082-4	chr11	86486965	86487165	+	894.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029788, intron 3 of 8)	intron (NM_029788, intron 3 of 8)	2408.0	NM_029788	76892.0	Mm.262707	NM_029788	ENSMUSG00000020521	Rnft1	0610013E23Rik|AV007605	ring finger protein, transmembrane 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-40700453-4	chr4	40700332	40700532	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025444, intron 1 of 7)	intron (NM_001025444, intron 1 of 7)	2484.0	NM_025545	66408.0	Mm.430710	NM_025545	ENSMUSG00000028411	Aptx	2410016G21Rik|AA388047|FHA-HIT	aprataxin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-31639471-2	chr2	31639371	31639571	+	556.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001123362)	promoter-TSS (NM_001123362)	-566.0	NM_001123362	381359.0	Mm.379512	NM_001123362	ENSMUSG00000079466	Prdm12	Gm998	PR domain containing 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-69162516-2	chr17	69162416	69162616	+	557.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355736, intron 1 of 21)	ORR1F|LTR|ERVL-MaLR	3160.0	NM_001355735	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-35136358-2	chr4	35136258	35136458	+	631.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178061, intron 1 of 3)	ORR1D-int|LTR|ERVL-MaLR	-15697.0	NM_199157	387510.0	Mm.386929	NM_199157	ENSMUSG00000042993	Ifnk	-	interferon kappa	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-100366016-4	chr6	100365917	100366117	+	913.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-78659.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91743207-4	chr16	91743087	91743287	+	978.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110276, intron 1 of 15)	intron (NM_001110276, intron 1 of 15)	13816.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127922546-4	chr7	127922438	127922638	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360699, intron 6 of 10)	intron (NM_001360699, intron 6 of 10)	7575.0	NM_133351	76560.0	Mm.5875	NM_133351	ENSMUSG00000030800	Prss8	2410039E18Rik|AI313909|C79772|CAP1|fr|mCAP1	protease, serine 8 (prostasin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-117816432-4	chr6	117816311	117816511	+	979.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24770.0	NM_001346649	232337.0	Mm.290847	NM_177684	ENSMUSG00000059689	Zfp637	AI646709|BC021601|Znf32	zinc finger protein 637	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-69890606-2	chr10	69890506	69890706	+	654.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_170729, intron 16 of 40)	intron (NM_170729, intron 16 of 40)	-34926.0	NM_170687	11735.0	Mm.235960	NM_009670	ENSMUSG00000069601	Ank3	2900054D09Rik|AI314020|Ank-3|AnkG|Ankyrin-3|Ankyrin-G	ankyrin 3, epithelial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-53195041-4	chr5	53194956	53195156	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172710, intron 2 of 23)	MIR3|SINE|MIR	18396.0	NM_172710	231238.0	Mm.235020	NM_172710	ENSMUSG00000029189	Sel1l3	2310045A20Rik|AI429585|mKIAA0746	sel-1 suppressor of lin-12-like 3 (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-78178045-4	chr11	78177957	78178157	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_106113)	promoter-TSS (NR_106113)	-92.0	NM_001291235	68385.0	Mm.390375	NM_026708	ENSMUSG00000019437	Tlcd1	-	TLC domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135885912-4	chr4	135885802	135886002	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9287.0	NM_009924	12802.0	Mm.297251	NM_009924	ENSMUSG00000062585	Cnr2	CB-2|CB2|CB2-R	cannabinoid receptor 2 (macrophage)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6077968-2	chr19	6077868	6078068	+	901.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081041)	promoter-TSS (NM_001081041)	-781.0	NM_001081041	68505.0	Mm.227361	NM_001081041	ENSMUSG00000024799	Vps51	1110014N23Rik|3110057M17Rik|AI837850|Ffr	VPS51 GARP complex subunit	protein-coding	-1.7024385483431	-1.81249224917775	-1.82134771053534	-1.82862185015837	-1.70038292649591	-1.81057323376012	-1.81934302819017	-1.82731978264371	0.0376840119903864	0.991491645451152	1
Merged-chr4-128669830-2	chr4	128669730	128669930	+	996.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001195130, intron 1 of 14)	L1MEf|LINE|L1	15128.0	NM_001195130	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-85276705-1	chr1	85276605	85276805	+	996.6666869999999	f1_balb.idr	Intergenic	RSINE1|SINE|B4	-6139.0	NM_001037909	620078.0	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik	RIKEN cDNA C130026I21 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32448659-2	chr2	32448559	32448759	+	621.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146118, intron 1 of 10)	intron (NM_146118, intron 1 of 10)	-1798.0	NM_194335	71254.0	Mm.102341	NM_194335	ENSMUSG00000039164	Naif1	2310007O20Rik|4933440H19Rik	nuclear apoptosis inducing factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-85530070-2	chr4	85529970	85530170	+	803.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	324614.0	NM_019535	20404.0	Mm.143603	NM_019535	ENSMUSG00000028488	Sh3gl2	9530001L19Rik|AI120490|AW555077|B930049H17Rik|EEN-B1|SH3PA|Sh3d2a	SH3-domain GRB2-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-6107500-4	chr17	6107357	6107557	+	970.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001103181, intron 1 of 13)	intron (NM_001103181, intron 1 of 13)	627.0	NM_001103181	68842.0	Mm.449307	NM_054040	ENSMUSG00000034377	Tulp4	1110057P05Rik|2210038L17Rik|Tusp	tubby like protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-101886825-3	chr2	101886669	101886869	+	805.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029635, intron 1 of 5)	intron (NM_029635, intron 1 of 5)	507.0	NM_029635	76501.0	Mm.330424	NM_029635	ENSMUSG00000027163	Commd9	1810029F08Rik|AA409293	COMM domain containing 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34934981-4	chr17	34934881	34935081	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010893, exon 6 of 6)	3' UTR (NM_010893, exon 6 of 6)	3728.0	NM_010893	18010.0	Mm.8856	NM_010893	ENSMUSG00000007038	Neu1	AA407268|AA407316|Aglp|Apl|Bat-7|Bat7|G9|Map-2|Neu|Neu-1	neuraminidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78595001-4	chr15	78594897	78595097	+	981.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-2050.0	NM_028195	72318.0	Mm.32911	NM_028195	ENSMUSG00000018008	Cyth4	2510004M07Rik|5830469K17Rik|AI467541|Pscd4|mFLJ00017	cytohesin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-67736996-4	chr18	67736888	67737088	+	990.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12367.0	NM_008977	19255.0	Mm.260433	NM_008977	ENSMUSG00000024539	Ptpn2	AI325124|Ptpt|TC-PTP	protein tyrosine phosphatase, non-receptor type 2	protein-coding	4.24922701283311	4.4608355462545	5.02250609716949	4.89695113946509	5.51612795978526	4.36050400675734	5.05714166353493	5.35126210703189	0.549525930577834	0.13535363019674	0.574789826014803
Merged-chr2-90748148-2	chr2	90748048	90748248	+	621.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_018828, intron 2 of 16)	B2_Mm1t|SINE|B2	2778.0	NM_018828	55935.0	Mm.489638	NM_018828	ENSMUSG00000008200	Fnbp4	FBP30|Fnbp30|mKIAA1014	formin binding protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-66272264-2	chr14	66272151	66272351	+	686.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	8801.0	NM_001162366	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	1.28263955229198	1.33032733983758	0.777654360546591	0.768190280903904	1.29434037214685	1.47351197746099	1.52815366638102	0.957101869051916	1.10261482047003	0.425305807302703	0.901356553382266
Merged-chr8-83732457-2	chr8	83732406	83732606	+	969.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011925, intron 4 of 19)	B1_Mur2|SINE|Alu	-8522.0	NR_106188	102465897.0		NR_106188	ENSMUSG00000098465	Mir1668	Gm27590|mmu-mir-1668	microRNA 1668	ncRNA	-0.0423039054933084	-0.569682257786807	-0.573000525887843	-0.575551177039815	-0.43948230545102	-0.221248486121566	-0.572269846000624	-0.575106184026512	-0.335326943827233	0.900437353874828	1
Merged-chr16-57448749-2	chr16	57448649	57448849	+	719.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 1 of 4)	Lx8b|LINE|L1	95472.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-94599547-4	chr16	94599461	94599661	+	721.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113389, intron 1 of 11)	intron (NM_001113389, intron 1 of 11)	-11858.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-33377865-2	chr4	33377765	33377965	+	599.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001305273, intron 11 of 15)	RMER15|LTR|ERVL	-60216.0	NR_106198	102465904.0		NR_106198	ENSMUSG00000098310	Mir8118	Gm27954|mmu-mir-8118	microRNA 8118	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-29216549-7	chr6	29216466	29216666	+	996.6785890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302933)	promoter-TSS (NM_001302933)	-202.0	NM_001302934	23917.0	Mm.260707	NM_011829	ENSMUSG00000003500	Impdh1	B930086D20Rik|IMPDH-I	inosine monophosphate dehydrogenase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-94695144-1	chr9	94695044	94695244	+	573.0	f1_c57bl6.idr	intron (NM_177909, intron 2 of 15)	intron (NM_177909, intron 2 of 15)	25252.0	NM_177909	331004.0	Mm.326125	NM_177909	ENSMUSG00000031129	Slc9a9	5730527A11Rik|9930105B05|AI854429|Nhe9	solute carrier family 9 (sodium/hydrogen exchanger), member 9	protein-coding	1.52987295995523	0.704492242331631	1.42399012874649	1.27106325851021	1.09850103216289	1.10062821488611	0.69587320189261	0.686315845863992	-1.66222602252498	0.271105568607302	0.774458240988193
Merged-chr6-100381291-4	chr6	100381183	100381383	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-93925.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-178063132-2	chr2	178063032	178063232	+	618.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	15293.0	NM_001162922	353208.0	Mm.381194	NM_001162922	ENSMUSG00000078861	Zfp931	2810021G02Rik	zinc finger protein 931	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98742678-3	chr11	98742518	98742718	+	808.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178060, intron 1 of 8)	intron (NM_178060, intron 1 of 8)	833.0	NM_001313983	21833.0	Mm.265917	NM_178060	ENSMUSG00000058756	Thra	6430529J03Rik|AW259572|Erba|Nr1a1|Rvr|T3R[a]|T3Ralpha|Thra1|Thra2|c-erbA-1|c-erbA-alpha|c-erbAalpha	thyroid hormone receptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-34220876-4	chr18	34220725	34220925	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007462)	promoter-TSS (NM_007462)	-159.0	NM_007462	11789.0	Mm.384171	NM_007462	ENSMUSG00000005871	Apc	AI047805|AU020952|AW124434|CC1|Min|mAPC	adenomatosis polyposis coli	protein-coding	4.39577874594857	3.50309654338739	4.19007886454531	3.15605601205239	4.7093338235463	4.47709549832182	4.7604258487007	4.59005661775789	0.947684405010413	0.0296522549420049	0.235055539745298
Merged-chr1-120550454-2	chr1	120550354	120550554	+	580.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45430.0	NM_010766	17167.0	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124732041-1	chr6	124731941	124732141	+	670.0	f0_balb.idr	intron (NM_001077705, intron 3 of 15)	intron (NM_001077705, intron 3 of 15)	1113.0	NM_013545	15170.0	Mm.271799	NM_013545	ENSMUSG00000004266	Ptpn6	70Z-SHP|Hcph|PTPTY-42|Ptp1C|SH-PTP1|SHP-1|hcp|me	protein tyrosine phosphatase, non-receptor type 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-74322841-4	chr1	74322723	74322923	+	738.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039509, intron 2 of 9)	B1_Mus2|SINE|Alu	-9787.0	NM_019999	56695.0	Mm.384726	NM_019999	ENSMUSG00000026179	Pnkd	2210013N15Rik|2810403H05Rik|AI854243|Brp17|MNCb-5687|MR-1|Tahccp2	paroxysmal nonkinesiogenic dyskinesia	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-151035140-4	chr1	151035053	151035253	+	799.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41718.0	NM_001024720	545370.0	Mm.379425	NM_001024720	ENSMUSG00000066842	Hmcn1	EG545370|FIBL-6|Gm201	hemicentin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-99220579-4	chr5	99220436	99220636	+	894.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181318, intron 13 of 13)	intron (NM_181318, intron 13 of 13)	32391.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-121628191-2	chr10	121628091	121628291	+	758.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D11|SINE|Alu	-1859.0	NM_001359618	73192.0	Mm.25042	NM_001081056	ENSMUSG00000034667	Xpot	1110004L07Rik|3110065H13Rik|AI452076|C79645|EXPORTIN-T	exportin, tRNA (nuclear export receptor for tRNAs)	protein-coding	1.40360196370804	0.956802506142496	2.33868593073807	1.14353438111183	1.75812623682275	1.42676648150501	0.940805800855596	2.04719039600423	0.033460119811444	0.978769069537699	0.998431161219273
Merged-chr16-18342989-5	chr16	18342971	18343171	+	857.033325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359110, intron 1 of 9)	intron (NM_001359110, intron 1 of 9)	839.0	NM_001359109	27883.0	Mm.265990	NM_138583	ENSMUSG00000013539	Tango2	D16H22S680E|T10	transport and golgi organization 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-118652819-3	chr7	118652681	118652881	+	916.2777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028930, intron 8 of 17)	intron (NM_028930, intron 8 of 17)	19045.0	NM_028930	74424.0	Mm.11068	NM_028930	ENSMUSG00000030650	Tmc5	4932443L08Rik|AU016085	transmembrane channel-like gene family 5	protein-coding	1.84975911402854	0.75404232740421	0.955271096451404	1.36819411806614	1.29866181081935	0.757227915079189	1.65234736610026	0.730464136024127	-0.491757601374224	0.738010567887027	0.998431161219273
Merged-chr12-10755239-3	chr12	10755124	10755324	+	957.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC-int|LTR|ERVL-MaLR	-292589.0	NR_045860	71457.0	Mm.95280	NR_045860	ENSMUSG00000113620	7420701I03Rik	-	RIKEN cDNA 7420701I03 gene	ncRNA	-0.77470346898156	-0.765341048433554	-0.319713670930351	-0.770784791472815	-0.300939631731329	-0.764646460349836	-0.767739517963786	-0.770371565253857	0.0897102984071192	0.976242779171559	1
Merged-chr9-13511205-3	chr9	13511132	13511332	+	746.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	79871.0	NR_028271	18689.0	Mm.41972	NM_008835	ENSMUSG00000031802	Phxr4	Sp5	per-hexamer repeat gene 4	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-80170653-2	chr18	80170553	80170753	+	751.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15586.0	NR_131039	105246506.0	Mm.392326	NR_131039		LOC105246506	-	uncharacterized LOC105246506	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59809495-4	chr15	59809374	59809574	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14515.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	-0.517495048472574	-0.494372523952945	-0.501676672798658	-0.286065472542212	-0.515975912669714	-0.492759513968139	0.729996066636301	-0.506460013072484	3.66188991868367	0.107348645031119	1
Merged-chr7-66106824-2	chr7	66106724	66106924	+	951.3333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2691.0	NM_001081163	269941.0	Mm.333916	NM_001081163	ENSMUSG00000032640	Chsy1	mKIAA0990	chondroitin sulfate synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-34808331-4	chr12	34808230	34808430	+	743.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271386, intron 3 of 27)	intron (NM_001271386, intron 3 of 27)	108765.0	NM_001271386	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	1.04304384205762	2.75285005549144	1.40213699242899	2.98098947527568	1.50339680826963	2.47792747606849	1.13116936053143	2.40708859763601	-0.654255964061788	0.560483083787609	0.960350977191929
Merged-chr9-57158277-4	chr9	57158186	57158386	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025417)	promoter-TSS (NM_025417)	13.0	NM_025417	66199.0	Mm.41687	NM_025417	ENSMUSG00000032299	Commd4	1110039H05Rik	COMM domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-138913986-4	chr4	138913877	138914077	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028453)	promoter-TSS (NM_028453)	-30.0	NM_028453	73162.0	Mm.238081	NM_028453	ENSMUSG00000041161	Otud3	3110030K17Rik	OTU domain containing 3	protein-coding	6.21530957819428	6.64586819911833	6.08481419996276	6.28328709584248	4.90928511659144	5.47866993380214	5.35123717464829	5.17098859134175	-1.20994457651748	2.16893914314734e-06	0.000125110249228278
Merged-chr5-101765103-4	chr5	101764977	101765177	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173370)	promoter-TSS (NM_173370)	-53.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166583307-2	chr2	166583207	166583407	+	817.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_177782, exon 26 of 40)	exon (NM_177782, exon 26 of 40)	18785.0	NR_152154	433503.0	Mm.491336	NR_152154		Gm29679	-	predicted gene, 29679	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128765685-5	chr2	128765564	128765764	+	747.866638	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 8 of 18)	intron (NM_008587, intron 8 of 18)	-52639.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	1.80717241799289	2.03890201094043	1.81567965104346	1.15521118396454	2.6065366150699	2.31851140935969	2.61595221476184	1.15941467044219	1.3925126470103	0.189816724495224	0.668518902297564
Merged-chr5-150118564-4	chr5	150118468	150118668	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	99893.0	NM_001289566	140498.0	Mm.444643	NM_080468	ENSMUSG00000053368	Rxfp2	Gpr106|Great|Lgr8	relaxin/insulin-like family peptide receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-56548044-4	chr19	56547917	56548117	+	944.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025811)	promoter-TSS (NM_025811)	105.0	NM_001360437	55947.0	Mm.2805	NM_018831	ENSMUSG00000025077	Dclre1a	2810043H12Rik|AU022226|Pso2|Smn1a|Snm1|mKIAA0086	DNA cross-link repair 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-11313916-4	chr16	11313816	11314016	+	902.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_011608, exon 1 of 3)	5' UTR (NM_011608, exon 1 of 3)	107.0	NM_011608	21935.0	Mm.12935	NM_011608	ENSMUSG00000022496	Tnfrsf17	BCM|BCMA|Tnfrsf13|Tnfrsf13a	tumor necrosis factor receptor superfamily, member 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-49320017-2	chr16	49319917	49320117	+	732.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	262531.0	NM_001166210	667772.0	Mm.301387	NM_001166210	ENSMUSG00000092009	Myh15	EG667772	myosin, heavy chain 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-64223400-2	chr7	64223306	64223506	+	723.0	f0_balb.idr|f0_c57.idr	intron (NM_001039104, intron 13 of 26)	intron (NM_001039104, intron 13 of 26)	17600.0	NR_029805	387207.0		NR_029805	ENSMUSG00000065585	Mir211	Mirn211|mir-211|mmu-mir-211	microRNA 211	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6036361-3	chr19	6036249	6036449	+	931.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10227.0	NM_028769	74126.0	Mm.149870	NM_028769	ENSMUSG00000024807	Syvn1	1200010C09Rik|AW211966|C85322|D530017H19Rik|Hrd1	synovial apoptosis inhibitor 1, synoviolin	protein-coding	0.880344479698141	0.343469273685391	0.900888132688571	0.861102767819721	0.705102941079982	0.344994510751065	0.338194403015601	0.33239065040335	-2.1944015646464	0.249476311755127	1
Merged-chr1-152539145-2	chr1	152539045	152539245	+	909.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 10 of 17)	intron (NM_016846, intron 10 of 17)	86072.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-80187107-2	chr11	80187017	80187217	+	752.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028019, intron 1 of 4)	RLTR30C_MM|LTR|ERV1	3245.0	NM_028019	71956.0	Mm.22985	NM_028019	ENSMUSG00000020707	Rnf135	0610037N03Rik|2410006N06Rik	ring finger protein 135	protein-coding	1.91557646607848	1.35744022436199	1.52111978041658	2.13228861517976	1.00975293273788	2.4963921488358	1.06809765363236	2.47999266864397	0.531540073791924	0.651463542041382	0.986293985805819
Merged-chr18-23819365-3	chr18	23819266	23819466	+	847.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153058, intron 1 of 6)	intron (NM_153058, intron 1 of 6)	15396.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124038068-2	chr5	124037968	124038168	+	783.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-5808.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-27493936-2	chr7	27493836	27494036	+	720.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-5388.0	NM_198048	19153.0	Mm.10119	NM_019412	ENSMUSG00000053198	Prx	L-Periaxin	periaxin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75650574-2	chr11	75650435	75650635	+	830.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008659)	promoter-TSS (NM_008659)	-974.0	NM_008659	17913.0	Mm.234502	NM_008659	ENSMUSG00000017774	Myo1c	C80397|MMIb|MYO1E|NMI|mm1beta|myr2	myosin IC	protein-coding	0.710691038467783	0.774947399936855	0.754706640797127	1.70804217980297	1.88011955372675	0.77941313178526	2.30318919269047	1.33918423143277	2.01393417625819	0.166882599725369	0.633091515020546
Merged-chr17-13660101-4	chr17	13659983	13660183	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB3|LINE|L1	-100458.0	NR_151731	17356.0	Mm.59167	NM_010806	ENSMUSG00000068036	Afdn	5033403D15Rik|AF6|Af-6|Afadin|Gm314|I-afadin|Mllt4|S-afadin	afadin, adherens junction formation factor	protein-coding	4.08986330085927	3.56387502165518	3.05137600228481	2.84293068162744	3.95939902297169	3.05889874890542	3.07604867829826	3.59402047818236	-0.00200949347028227	0.9973041019433	0.999268611847349
Merged-chr1-170510776-3	chr1	170510662	170510862	+	933.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109985, intron 2 of 9)	MIRc|SINE|MIR	46348.0	NM_027528	70729.0	Mm.409310	NM_027528	ENSMUSG00000038473	Nos1ap	6330408P19Rik|Capon	nitric oxide synthase 1 (neuronal) adaptor protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-103605851-3	chr3	103605752	103605952	+	839.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276676, intron 3 of 6)	intron (NM_001276676, intron 3 of 6)	29726.0	NM_001276681	54524.0	Mm.88818	NM_018800	ENSMUSG00000027849	Syt6	3110037A08Rik|AW048930|sytVI	synaptotagmin VI	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-88901802-1	chr11	88901702	88901902	+	799.0	f1_c57bl6.idr	Intergenic	Intergenic	-4126.0	NR_045955	73921.0	Mm.439148	NR_045955	ENSMUSG00000087338	Scpep1os	4930405P13Rik	serine carboxypeptidase 1, opposite strand	ncRNA	0.817798235258589	-0.0358329817018876	-0.0415283440650921	0.39329779667392	-0.0521734806053445	-0.0345511728950592	-0.0402709126787365	0.273263011989347	-2.29949987188773	0.313341696196023	1
Merged-chr4-154946510-4	chr4	154946421	154946621	+	873.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14402.0	NM_010419	15208.0	Mm.137268	NM_010419	ENSMUSG00000048001	Hes5	bHLHb38	hes family bHLH transcription factor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131912161-2	chr1	131912061	131912261	+	678.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145804, intron 1 of 6)	B1_Mus1|SINE|Alu	1703.0	NM_175294	98415.0	Mm.246869	NM_175294	ENSMUSG00000026434	Nucks1	2700010L10Rik|8430423A01Rik|AI647518|C78391|Nucks	nuclear casein kinase and cyclin-dependent kinase substrate 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-42280002-2	chr10	42279902	42280102	+	830.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3260.0	NM_019740	56484.0	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-5144245-2	chr15	5144145	5144345	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013367, intron 1 of 8)	intron (NM_001013367, intron 1 of 8)	384.0	NM_001355640	105787.0	Mm.207004	NM_001013367	ENSMUSG00000050697	Prkaa1	AI194361|AI450832|AL024255|AMPKalpha1|C130083N04Rik	protein kinase, AMP-activated, alpha 1 catalytic subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-108284612-4	chr9	108284509	108284709	+	924.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-5848.0	NM_025449	66257.0	Mm.10407	NM_025449	ENSMUSG00000032606	Nicn1	1500032A17Rik	nicolin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-74952912-2	chr5	74952812	74953012	+	796.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045866, intron 1 of 4)	intron (NR_045866, intron 1 of 4)	3718.0	NR_045866	619945.0	Mm.359372	NM_001037908	ENSMUSG00000072874	Gm6116	EG619945	predicted gene 6116	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-181236409-2	chr2	181236309	181236509	+	705.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_183162, exon 7 of 19)	exon (NM_183162, exon 7 of 19)	5618.0	NM_183162	229003.0	Mm.315872	NM_183162	ENSMUSG00000027580	Helz2	PDIP1|Pric285|mKIAA1769|mPDIP1	helicase with zinc finger 2, transcriptional coactivator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-104687477-4	chr2	104687404	104687604	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177190, intron 7 of 9)	intron (NM_177190, intron 7 of 9)	24658.0	NM_177190	320554.0	Mm.249065	NM_177190	ENSMUSG00000027175	Tcp11l1	C130096D04Rik	t-complex 11 like 1	protein-coding	5.03414535884943	5.26643672040823	5.52764914965101	5.23706609825672	4.8259010021465	4.89224439562129	4.99923406557815	3.95525225834396	-0.659587198212949	0.0518884109377885	0.33335470508862
Merged-chr14-101561426-3	chr14	101561323	101561523	+	911.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081278, intron 1 of 18)	intron (NM_001081278, intron 1 of 18)	47768.0	NM_001081278	210789.0	Mm.320639	NM_173380	ENSMUSG00000033083	Tbc1d4	5930406J04Rik|A930035N22|AV295684|As160	TBC1 domain family, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-151208495-2	chr4	151208395	151208595	+	598.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081557, intron 6 of 23)	intron (NM_001081557, intron 6 of 23)	118925.0	NM_001308446	105704528.0	Mm.415128	NM_001308446	ENSMUSG00000078491	Gm13090	-	predicted gene 13090	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-110669604-4	chr7	110669504	110669704	+	849.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41947.0	NM_009627	11535.0	Mm.1408	NM_009627	ENSMUSG00000030790	Adm	AM	adrenomedullin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65745626-4	chr9	65745520	65745720	+	940.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172536, intron 2 of 9)	RSINE1|SINE|B4	69072.0	NM_001301307	18247.0	Mm.116749	NM_010952	ENSMUSG00000040652	Oaz2	AZ-2|AZ2|Oaz2-ps|Sez15	ornithine decarboxylase antizyme 2	protein-coding	2.3188189157414	1.42511395912391	0.905254595711946	0.885639865939142	2.45669453354287	0.935130185859192	1.17195748053268	2.0964552391224	0.722179787622884	0.586526647305766	0.967881906433328
Merged-chr5-67264282-4	chr5	67264198	67264398	+	812.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_028975, exon 4 of 8)	exon (NM_028975, exon 4 of 8)	3733.0	NM_030108	67878.0	Mm.23217	NM_028975	ENSMUSG00000037720	Tmem33	1110006G02Rik|1600019D15Rik|2410089A21Rik|2700052H22Rik|5430406L04Rik|AA388285|AI314185|AI426615|db83	transmembrane protein 33	protein-coding	-1.26297147305202	-1.51336964835199	-1.52290115558626	-1.53073061942109	-1.54267576991114	-1.36133000838898	-1.52074343127311	-1.52932914913802	-0.563746499231123	0.872676935132172	1
Merged-chr8-13597020-2	chr8	13596920	13597120	+	564.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 5 of 23)	intron (NM_009025, intron 5 of 23)	-34559.0	NM_001080781	66501.0	Mm.46136	NM_025601	ENSMUSG00000031452	1700029H14Rik	-	RIKEN cDNA 1700029H14 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-130292542-2	chr4	130292442	130292642	+	643.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16236.0	NM_010174	14077.0	Mm.388886	NM_010174	ENSMUSG00000028773	Fabp3	Fabph-1|Fabph-4|Fabph1|Fabph4|H-FABP|Mdgi	fatty acid binding protein 3, muscle and heart	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-125723742-3	chr2	125723607	125723807	+	798.81665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_199022, exon 1 of 12)	5' UTR (NM_199022, exon 1 of 12)	441.0	NM_199022	271849.0	Mm.425101	NM_199022	ENSMUSG00000035109	Shc4	6230417E10Rik|9930029B02Rik|Gm685|RaLP	SHC (Src homology 2 domain containing) family, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-78049169-2	chr9	78049069	78049269	+	731.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2789.0	NM_008103	14531.0	Mm.1400	NM_008103	ENSMUSG00000023333	Gcm1	GCMa|Gcm-rs2|Gcm1-rs1|glide	glial cells missing homolog 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-54566060-2	chr13	54565960	54566160	+	868.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252648)	promoter-TSS (NM_001252648)	-678.0	NM_133797	97820.0	Mm.24593	NM_133797	ENSMUSG00000025871	4833439L19Rik	4930558H15Rik|C81457|Kiaa1191|P33monox	RIKEN cDNA 4833439L19 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-107259378-3	chr7	107259289	107259489	+	990.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49944.0	NM_029660	76572.0	Mm.128134	NM_029660	ENSMUSG00000073894	Rbmxl2	1700012H05Rik|Hnrnpg-t	RNA binding motif protein, X-linked-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-89178153-3	chr7	89178050	89178250	+	963.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360746, intron 6 of 14)	intron (NM_001360746, intron 6 of 14)	160637.0	NM_028343	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-24301153-4	chr19	24301067	24301267	+	931.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008846, intron 14 of 14)	intron (NM_008846, intron 14 of 14)	-20581.0	NM_008044	14297.0	Mm.7319	NM_008044	ENSMUSG00000059363	Fxn	FA|FARR|Frda|X25	frataxin	protein-coding	3.56427061140422	4.27196473053688	4.30385140753885	3.5201486666115	4.711454456531	4.71487151500551	3.97142496234954	3.00217235337508	0.408316028318653	0.428735021276453	0.903416445927044
Merged-chr9-75625758-3	chr9	75625685	75625885	+	830.755554	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027309)	promoter-TSS (NM_027309)	53.0	NM_027309	70082.0	Mm.19119	NM_027309	ENSMUSG00000032184	Lysmd2	2210402C18Rik|AV033872|AW538442	LysM, putative peptidoglycan-binding, domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-178058411-3	chr2	178058326	178058526	+	867.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19999.0	NM_001162922	353208.0	Mm.381194	NM_001162922	ENSMUSG00000078861	Zfp931	2810021G02Rik	zinc finger protein 931	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78257911-4	chr15	78257764	78257964	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008677, intron 7 of 9)	intron (NM_008677, intron 7 of 9)	13053.0	NM_008677	17972.0	Mm.2068	NM_008677	ENSMUSG00000071715	Ncf4	AI451400|p40phox	neutrophil cytosolic factor 4	protein-coding	5.27620467572308	5.34027251610344	5.31384552910471	4.98528676057291	5.61293536728398	4.88102238923944	5.03599196316884	5.20781388774623	-0.0121174809672694	0.968223593035552	0.998431161219273
Merged-chr11-79160328-2	chr11	79160228	79160428	+	550.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-13855.0	NM_013571	16706.0	Mm.4745	NM_013571	ENSMUSG00000018334	Ksr1	AW492498|B-KSR1|D11Bhm183e|D11Bhm184e|Ksr|RSU2|hb|mKSR1	kinase suppressor of ras 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-61988011-6	chr15	61987872	61988072	+	934.388916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010849, exon 2 of 3)	exon (NM_010849, exon 2 of 3)	2631.0	NM_001177352	17869.0	Mm.2444	NM_010849	ENSMUSG00000022346	Myc	AU016757|Myc2|Niard|Nird|bHLHe39	myelocytomatosis oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-164066884-4	chr1	164066785	164066985	+	902.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164059, intron 4 of 7)	intron (NM_001164059, intron 4 of 7)	4809.0	NM_011346	20343.0	Mm.1461	NM_011346	ENSMUSG00000026581	Sell	AI528707|CD62L|L-selectin|LECAM-1|Lnhr|Ly-22|Ly-m22|Lyam-1|Lyam1	selectin, lymphocyte	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-30469749-2	chr15	30469649	30469849	+	936.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355502, intron 2 of 21)	intron (NM_001355502, intron 2 of 21)	297156.0	NM_008729	18163.0	Mm.321648	NM_008729	ENSMUSG00000022240	Ctnnd2	Catnd2|Nprap|neurojugin	catenin (cadherin associated protein), delta 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-116055367-2	chr4	116055267	116055467	+	650.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4B|LINE|L1	-1491.0	NM_028142	72181.0	Mm.282560	NM_028142	ENSMUSG00000028706	Nsun4	2310010O12Rik|2810405F18Rik|AI507900|Shtap	NOL1/NOP2/Sun domain family, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-75699000-2	chr2	75698900	75699100	+	818.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_132727, intron 1 of 1)	intron (NR_132727, intron 1 of 1)	5663.0	NR_132727	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-124609909-2	chr2	124609809	124610009	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172537)	promoter-TSS (NM_172537)	-387.0	NM_199238	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-111159959-4	chr10	111159868	111160068	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1-int|LTR|ERVL-MaLR	-4834.0	NM_001003717	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	2.85593894508593	2.2751836289164	1.93661524241848	3.13388132014035	3.81884869238785	3.95994836260962	3.95660304108806	4.69370297486978	2.31698660931169	0.000109780774584608	0.00331497416140803
Merged-chr7-140953912-4	chr7	140953813	140954013	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_030694)	TTS (NM_030694)	2048.0	NM_030694	80876.0	Mm.379266	NM_030694	ENSMUSG00000060591	Ifitm2	DSPA2c|Ifitm3l|fragilis3|mil-3	interferon induced transmembrane protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52646688-3	chr13	52646587	52646787	+	774.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001198977, exon 14 of 14)	3' UTR (NM_001198977, exon 14 of 14)	49805.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-152477620-4	chr4	152477558	152477758	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355173)	promoter-TSS (NM_001355173)	-80.0	NM_001355739	260305.0	Mm.302496	NM_153424	ENSMUSG00000039577	Nphp4	4930564O18Rik|nmf192	nephronophthisis 4 (juvenile) homolog (human)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-31135838-2	chr6	31135738	31135938	+	574.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_110471, intron 3 of 3)	intron (NR_110471, intron 3 of 3)	-72745.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-66464529-2	chr18	66464429	66464629	+	786.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_021451, exon 3 of 3)	3' UTR (NM_021451, exon 3 of 3)	5925.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-89848770-4	chr16	89848677	89848877	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009384, intron 12 of 27)	intron (NM_009384, intron 12 of 27)	-30425.0	NM_001145887	21844.0	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125403799-3	chr6	125403756	125403956	+	718.9523929999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23352.0	NM_198604	213522.0	Mm.333396	NM_198604	ENSMUSG00000038167	Plekhg6	BC026778|Gm155	pleckstrin homology domain containing, family G (with RhoGef domain) member 6	protein-coding	-0.700064241511417	-0.186671140929496	-0.692852367725508	-0.695563882069579	-0.699394869705802	-0.177296101845517	-0.692077155152847	-0.695090216270211	0.0394491945098347	0.989215944639676	1
Merged-chr14-27336627-7	chr14	27336563	27336763	+	915.8214109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289687, intron 1 of 9)	intron (NM_001289687, intron 1 of 9)	626.0	NM_001289687	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105605760-3	chr8	105605652	105605852	+	875.533325	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081241, intron 1 of 21)	intron (NM_001081241, intron 1 of 21)	523.0	NM_001081241	75687.0	Mm.41261	NM_001081241	ENSMUSG00000038604	Ripor1	2310066E14Rik|AI837433|Fam65a	RHO family interacting cell polarization regulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-157798530-4	chr2	157798428	157798628	+	785.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025680, intron 4 of 15)	intron (NM_025680, intron 4 of 15)	61127.0	NM_025680	66642.0	Mm.45193	NM_025680	ENSMUSG00000027649	Ctnnbl1	5730471K09Rik|NAP|NYD-SP19|P14L	catenin, beta like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-40271336-2	chr9	40271236	40271436	+	614.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286614, intron 2 of 6)	intron (NM_001286614, intron 2 of 6)	2120.0	NM_001359700	235281.0	Mm.290083	NM_153522	ENSMUSG00000049281	Scn3b	1110001K16Rik|4833414B02Rik|Scnb3	sodium channel, voltage-gated, type III, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-95232140-2	chr11	95232040	95232240	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29389.0	NM_053093	93670.0	Mm.40085	NM_053093	ENSMUSG00000020872	Tac4	AW489379|PPT-C	tachykinin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-60731087-3	chr19	60730983	60731183	+	882.2666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24904.0	NM_178421	332397.0	Mm.186390	NM_178421	ENSMUSG00000072437	Nanos1	NOS-1	nanos C2HC-type zinc finger 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69614203-4	chr11	69614118	69614318	+	839.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011367)	TTS (NM_011367)	3687.0	NM_011367	20415.0	Mm.1431	NM_011367	ENSMUSG00000005202	Shbg	ABP	sex hormone binding globulin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-14889379-3	chr8	14889277	14889477	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012000, intron 1 of 2)	intron (NM_012000, intron 1 of 2)	841.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-138831971-4	chr5	138831863	138832063	+	908.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER4B|LTR|ERVK	11883.0	NM_001195128	384244.0	Mm.485002	NM_001195128	ENSMUSG00000094504	Gm5294	EG384244	predicted gene 5294	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-114691499-2	chr5	114691401	114691601	+	975.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019821)	promoter-TSS (NM_019821)	-566.0	NM_019821	56356.0	Mm.275766	NM_019821	ENSMUSG00000011884	Gltp	1110001F24Rik|C76925|C77564	glycolipid transfer protein	protein-coding	1.8738521717715	2.63687201557934	3.10571152974932	1.97258787785889	1.88903508708642	2.65653630169167	2.33597559006034	1.98255939575253	-0.558618574870247	0.517135154757513	0.947641799425091
Merged-chr15-64163393-3	chr15	64163296	64163496	+	753.0	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	intron (NM_001276461, intron 9 of 28)	L1MB5|LINE|L1	-102948.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	2.93523426341969	3.21165362763777	3.54172550380803	2.32408119509805	3.17540929063959	3.55413566311878	1.52256687090323	1.97736497188949	-0.438239787327374	0.590427033326529	0.969416194987468
Merged-chr4-9667240-2	chr4	9667140	9667340	+	723.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290367, intron 1 of 22)	intron (NM_001290367, intron 1 of 22)	1922.0	NM_023066	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-96705763-4	chr9	96705672	96705872	+	990.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359959, intron 2 of 2)	intron (NM_001359959, intron 2 of 2)	13673.0	NM_001359960	245007.0	Mm.485954	NM_175537	ENSMUSG00000040433	Zbtb38	A930014K01Rik|CIBZ	zinc finger and BTB domain containing 38	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-61774380-4	chr14	61774277	61774477	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-92004.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-30972555-2	chr16	30972455	30972655	+	656.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198626, intron 3 of 3)	intron (NM_198626, intron 3 of 3)	108877.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	-0.39775221082262	-0.741028196029578	-0.743853948694094	-0.345221339453065	-0.612337384474907	-0.740389026862267	-0.743232086238244	-0.74564484537528	-2.10503621449659	0.449339302856489	1
Merged-chr8-13154337-3	chr8	13154235	13154435	+	863.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-4826.0	NM_001317353	16783.0	Mm.16716	NM_010684	ENSMUSG00000031447	Lamp1	CD107a|LGP-120|LGP-A|Lamp-1|P2B|Perk	lysosomal-associated membrane protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106496476-2	chr11	106496376	106496576	+	945.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-4515.0	NR_030703	100216537.0		NR_030703	ENSMUSG00000065126	Snord104	-	small nucleolar RNA, C/D box 104	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-61960986-4	chr9	61960893	61961093	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028748, intron 7 of 7)	MER5A|DNA|hAT-Charlie	-14194.0	NM_024245	71819.0	Mm.259374	NM_024245	ENSMUSG00000032254	Kif23	3110001D19Rik|C87313|CHO1|Knsl5|MKLP-1|MKLP1	kinesin family member 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-59237886-4	chr10	59237783	59237983	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2-int|LTR|ERVL-MaLR	15961.0	NM_172939	268301.0	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117198309-4	chr8	117198221	117198421	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081151, intron 9 of 10)	intron (NM_001081151, intron 9 of 10)	40186.0	NM_001081151	209239.0	Mm.132992	NM_001081151	ENSMUSG00000052557	Gan	A330045G18|gigaxonin	giant axonal neuropathy	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-127182994-4	chr2	127182892	127183092	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25288.0	NM_198630	329509.0	Mm.120738	NM_198630	ENSMUSG00000044145	1810024B03Rik	-	RIKEN cDNA 1810024B03 gene	protein-coding	5.6500743816737	5.78242005279756	5.81724802586819	6.00831614932627	5.66855363652858	6.04028935069331	5.80743651920206	5.77381958982868	0.00506741190932573	0.983202527973543	0.998431161219273
Merged-chr2-77285148-3	chr2	77285032	77285232	+	847.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4540.0	NM_175465	228071.0	Mm.27120	NM_175465	ENSMUSG00000042272	Sestd1	1500031J16Rik|A930010O20|Solo/Trio8	SEC14 and spectrin domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-128062926-1	chr6	128062826	128063026	+	590.0	f1_c57bl6.idr	intron (NM_001356301, intron 1 of 7)	intron (NM_001356301, intron 1 of 7)	80652.0	NM_175414	109246.0	Mm.21814	NM_175414	ENSMUSG00000030352	Tspan9	6720474K14Rik|9430079M16Rik|AU018597|Tspan-9	tetraspanin 9	protein-coding	0.166395665916375	1.22377710026929	0.426540765717888	0.182041091854066	0.168757548302977	0.20542883166273	0.193804662740588	1.51652521552652	0.384971076014105	0.907002927347669	0.998431161219273
Merged-chr18-65965211-3	chr18	65965130	65965330	+	689.138916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145493, intron 2 of 2)	intron (NM_145493, intron 2 of 2)	4948.0	NM_145493	225644.0	Mm.192285	NM_145493	ENSMUSG00000024519	Cplx4	A930004D23Rik|CPXIV|Gm957	complexin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-87829831-3	chr1	87829757	87829957	+	791.57782	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009118, intron 10 of 15)	intron (NM_009118, intron 10 of 15)	-23430.0	NM_177646	227333.0	Mm.277217	NM_177646	ENSMUSG00000070738	Dgkd	AI841987|D330025K09|DGKdelta|dgkd-2	diacylglycerol kinase, delta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-122663868-2	chr14	122663768	122663968	+	860.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_153443, intron 10 of 24)	intron (NR_153443, intron 10 of 24)	129540.0	NM_144844	110821.0	Mm.23876	NM_144844	ENSMUSG00000041650	Pcca	C79630	propionyl-Coenzyme A carboxylase, alpha polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-67611498-1	chr18	67611398	67611598	+	593.0	f1_balb.idr	Intergenic	Intergenic	29857.0	NM_001357523	225659.0	Mm.111928	NM_001081073	ENSMUSG00000073542	Cep76	6230425F05Rik|9630013E05	centrosomal protein 76	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-22913102-4	chr14	22912993	22913193	+	993.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028275, intron 6 of 6)	intron (NM_028275, intron 6 of 6)	181478.0	NR_033550	791307.0	Mm.364384	NR_033550	ENSMUSG00000068680	Gm10248	-	predicted gene 10248	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-39577497-4	chr1	39577396	39577596	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033135)	promoter-TSS (NM_001033135)	-149.0	NM_001033135	67702.0	Mm.28614	NM_001033135	ENSMUSG00000048234	Rnf149	1600023E10Rik|AV037261|C76763|Gm15832|Greul4	ring finger protein 149	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-75312182-4	chr9	75312074	75312274	+	742.549988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010313, intron 2 of 12)	intron (NM_010313, intron 2 of 12)	-1894.0	NR_073186	14697.0	Mm.17604	NM_010313	ENSMUSG00000032192	Gnb5	GBS|Gbeta5|flr	guanine nucleotide binding protein (G protein), beta 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-114699170-4	chr5	114699056	114699256	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER54A|LTR|ERVL	-8221.0	NM_019821	56356.0	Mm.275766	NM_019821	ENSMUSG00000011884	Gltp	1110001F24Rik|C76925|C77564	glycolipid transfer protein	protein-coding	6.50145726878186	6.42412055161224	5.94960747090479	5.83390704167527	6.45169003040216	5.19872352319855	6.05036635711854	5.92030417384413	-0.244301115042666	0.379721383179259	0.871899780487614
Merged-chr5-147554514-2	chr5	147554414	147554614	+	740.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	124358.0	NM_028291	72587.0	Mm.320469	NM_028291	ENSMUSG00000029647	Pan3	2700050F09Rik|A430027N15Rik|AU014670	PAN3 poly(A) specific ribonuclease subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-120517755-4	chr1	120517660	120517860	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12736.0	NM_010766	17167.0	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	5.97556865624347	6.64543199131961	5.83592642194778	5.65432130583161	5.96704582053726	5.21672529501058	5.96156251849187	4.95270072057371	-0.528707969166807	0.0864561688390467	0.452048713130832
Merged-chr11-50290326-2	chr11	50290226	50290426	+	588.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175334, intron 1 of 4)	intron (NM_175334, intron 1 of 4)	2010.0	NM_175334	103806.0	Mm.51116	NM_175334	ENSMUSG00000050567	Maml1	AI644666|AW743257|D930008C07Rik|Mam-1|Mam1|mKIAA0200	mastermind like transcriptional coactivator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-43614440-4	chr7	43614306	43614506	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355131, intron 3 of 3)	intron (NM_001355131, intron 3 of 3)	7237.0	NM_028913	74400.0	Mm.159188	NM_028913	ENSMUSG00000055102	Zfp819	4930427I11Rik|4933405K07Rik	zinc finger protein 819	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-89259122-4	chr9	89259019	89259219	+	978.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MEg|LINE|L1	47735.0	NM_001359993	107885.0	Mm.486274	NM_026829	ENSMUSG00000066442	Mthfs	1110034I12Rik|2310020H23Rik|AI119695	5, 10-methenyltetrahydrofolate synthetase	protein-coding	3.64730663218284	2.96094902298956	3.81140169878149	3.89181757237501	3.67632175298998	2.98386868032801	3.83973750384366	3.91052615835392	0.0370805537334681	0.944558677535796	0.998431161219273
Merged-chr7-99956351-1	chr7	99956251	99956451	+	618.0	f0_balb.idr	intron (NM_175388, intron 1 of 5)	intron (NM_175388, intron 1 of 5)	24107.0	NM_175388	108937.0	Mm.323087	NM_175388	ENSMUSG00000058761	Rnf169	2900057K09Rik	ring finger protein 169	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-121080197-3	chr7	121080119	121080319	+	732.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3219.0	NM_139310	246190.0	Mm.221073	NM_139310	ENSMUSG00000034990	Otoa	-	otoancorin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75254702-4	chr11	75254601	75254801	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177708, intron 1 of 1)	intron (NM_177708, intron 1 of 1)	60708.0	NM_177708	237847.0	Mm.82661	NM_177708	ENSMUSG00000045287	Rtn4rl1	Ngr3|Ngrh2|Ngrl2	reticulon 4 receptor-like 1	protein-coding	0.406328908240169	0.431042715049903	0.42298320566116	1.16099881478711	0.912089030028427	0.432854756905514	1.02558091564181	0.867421467720391	0.876393121916886	0.627951065896124	1
Merged-chr13-63877298-4	chr13	63877192	63877392	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013608, intron 16 of 18)	intron (NM_001013608, intron 16 of 18)	62052.0	NM_023507	76251.0	Mm.186610	NM_023507	ENSMUSG00000021470	Ercc6l2	0610007P08Rik|1700019D06Rik|9330134C04Rik|Rad26l|Sr278	excision repair cross-complementing rodent repair deficiency, complementation group 6 like 2	protein-coding	5.24290817943757	4.81710571008219	4.7561597309118	5.4263563317158	3.75357763551111	3.89035604273569	4.65643872108729	3.43571412227493	-1.36119557967095	0.000804339814627557	0.016246580969531
Merged-chr12-104240257-1	chr12	104240157	104240357	+	651.0	f1_balb.idr	exon (NM_009251, exon 6 of 7)	exon (NM_009251, exon 6 of 7)	4110.0	NM_001353613	20715.0	Mm.312628	NM_009251		Serpina3g	2A2|AI119734|Spi2-1|Spi2/eb.1|Spi2A|spi2	serine (or cysteine) peptidase inhibitor, clade A, member 3G	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-119792301-2	chr13	119792201	119792401	+	662.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-1179.0	NM_001302550	72465.0	Mm.139115	NM_028245	ENSMUSG00000094870	Zfp131	2610109I01Rik|AW558871|Znf131	zinc finger protein 131	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-85278419-1	chr1	85278319	85278519	+	992.3333130000001	f1_balb.idr	Intergenic	L1_Mus3|LINE|L1	-7853.0	NM_001037909	620078.0	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik	RIKEN cDNA C130026I21 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-119662897-4	chr2	119662811	119663011	+	710.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356467)	promoter-TSS (NM_001356467)	-77.0	NM_027175	69702.0	Mm.5390	NM_027175	ENSMUSG00000027305	Ndufaf1	2410001M24Rik|CGI-65|CIA30	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 1	protein-coding	1.99554933069074	1.20353272977497	2.05675089775407	1.99689494639098	1.90819829797914	2.72503105910744	1.42830500274642	1.74336333998183	0.505342371139318	0.626524453367817	0.980912176761026
Merged-chr2-84632641-2	chr2	84632541	84632741	+	647.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007615, intron 1 of 19)	B1F|SINE|Alu	16839.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-54530086-4	chr8	54529991	54530191	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029701)	promoter-TSS (NM_029701)	-93.0	NM_029701	76687.0	Mm.86437	NM_029701	ENSMUSG00000054408	Spcs3	1810011E08Rik|SPC22/23	signal peptidase complex subunit 3 homolog (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75678646-2	chr11	75678546	75678746	+	933.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001277221)	promoter-TSS (NM_001277221)	-613.0	NM_001277219	12928.0	Mm.280125	NM_133656	ENSMUSG00000017776	Crk	Crk-I|Crk-II|Crk-III|Crk3|CrkIII|Crko|c-Crk|p38	v-crk avian sarcoma virus CT10 oncogene homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-32710609-2	chr19	32710508	32710708	+	566.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026487, intron 1 of 9)	B1_Mus2|SINE|Alu	1690.0	NM_026487	67979.0	Mm.27123	NM_026487	ENSMUSG00000013662	Atad1	4921525H23Rik|AW107648|Thorase	ATPase family, AAA domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67689102-2	chr10	67689002	67689202	+	576.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-117143.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-98913087-2	chr7	98912995	98913195	+	688.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 13 of 14)	intron (NM_178635, intron 13 of 14)	74250.0	NM_001285795	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	1.31033055014343	2.43202153156543	1.71367177055554	1.7663716622756	0.996071633057457	0.848904246720177	1.07829461927624	0.810092715133532	-3.78089128118482	0.00728122943257793	0.0868967414443667
Merged-chr9-50866025-3	chr9	50865931	50866131	+	876.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286553, intron 5 of 16)	MTC|LTR|ERVL-MaLR	9107.0	NM_001286553	73699.0	Mm.7726	NM_028614	ENSMUSG00000032058	Ppp2r1b	2410091N08Rik|AI790395	protein phosphatase 2, regulatory subunit A, beta	protein-coding	1.10482785039951	0.39319669323447	0.370189623659516	0.181976492990861	0.456702946342101	0.195321895369284	0.188618375661076	0.50090640520812	-1.48125464968297	0.428438342612764	1
Merged-chr8-70477042-4	chr8	70476978	70477178	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001122830)	promoter-TSS (NM_001122830)	-135.0	NM_178771	234378.0	Mm.187090	NM_172052	ENSMUSG00000055707	Klhl26	C630013N10Rik|Klkl26	kelch-like 26	protein-coding	2.07369461911021	1.63437740265053	1.96656348393497	1.74552283028949	2.55008472574834	2.0483385641755	2.98242450644676	2.51143793813833	1.6957662427469	0.0528192563027198	0.336372312696407
Merged-chr11-22969686-4	chr11	22969599	22969799	+	954.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144514, intron 1 of 2)	intron (NM_144514, intron 1 of 2)	-2306.0	NM_011663	22183.0	Mm.29542	NM_011663	ENSMUSG00000044068	Zrsr1	D11Ncvs75|Irlgs2|SP2|U2af1-rs1|U2afbp-rs	zinc finger (CCCH type), RNA binding motif and serine/arginine rich 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46254500-2	chr19	46254400	46254600	+	679.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178930, intron 6 of 39)	intron (NM_178930, intron 6 of 39)	-50237.0	NM_001177369	18034.0	Mm.102365	NM_019408	ENSMUSG00000025225	Nfkb2	NF-kappaB2|lyt|p49|p49/p100|p50B|p52	nuclear factor of kappa light polypeptide gene enhancer in B cells 2, p49/p100	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-74431711-4	chr17	74431591	74431791	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033367, intron 8 of 8)	MTE2b|LTR|ERVL-MaLR	27417.0	NM_001033367	268973.0	Mm.311884	NM_001033367	ENSMUSG00000039193	Nlrc4	9530011P19Rik|CLAN|CLAN1|CLANA|CLANB|CLANC|CLAND|Card12|IPAF	NLR family, CARD domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-11758875-2	chr8	11758775	11758975	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_017402, intron 1 of 19)	intron (NM_017402, intron 1 of 19)	545.0	NM_001113518	54126.0	Mm.244068	NM_017402	ENSMUSG00000031511	Arhgef7	Cool|PIX|Pak3bp|betaPix|betaPix-b|betaPix-c|cool-1|mKIAA0142|p85Cool1|p85SPR	Rho guanine nucleotide exchange factor (GEF7)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-148176811-2	chr4	148176711	148176911	+	700.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16143.0	NM_176848	230904.0	Mm.262287	NM_176848	ENSMUSG00000041556	Fbxo2	FBG1|FBX2|Fbs1|Fbs2|NFB42|Prpl4	F-box protein 2	protein-coding	0.580442511800197	1.47194305766376	1.28959429248101	0.598138636269603	0.583107964869042	1.486379783042	1.42121669654131	0.599971547278716	0.18623082650026	0.909894475572687	0.998431161219273
Merged-chr3-121307750-4	chr3	121307624	121307824	+	924.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024178, intron 2 of 3)	intron (NM_024178, intron 2 of 3)	15984.0	NM_024178	66789.0	Mm.269881	NM_024178	ENSMUSG00000039887	Alg14	5430428G01Rik|AI854024	asparagine-linked glycosylation 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141419565-4	chr4	141419456	141419656	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1223.0	NM_013868	29818.0	Mm.46181	NM_013868	ENSMUSG00000006221	Hspb7	27kDa|Hsp25-2|cvHsp	heat shock protein family, member 7 (cardiovascular)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-82990438-2	chr15	82990338	82990538	+	990.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31142.0	NR_037241	100526477.0		NR_037241	ENSMUSG00000092751	Mir3080	mmu-mir-3080	microRNA 3080	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-35026984-1	chr9	35026884	35027084	+	575.0	f0_balb.idr	intron (NM_001190912, intron 12 of 15)	intron (NM_001190912, intron 12 of 15)	-89744.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122923085-4	chr8	122922962	122923162	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 2 of 12)	intron (NM_001081379, intron 2 of 12)	74688.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	3.17883514391045	3.61850481984291	3.11199757127142	3.34320091573644	2.59540739673349	2.91184325133678	2.68568452449723	2.72827931980367	-1.06039093252555	0.0877662761305664	0.455488286273391
Merged-chr7-80781216-1	chr7	80781116	80781316	+	848.0	f1_c57bl6.idr	intron (NM_016721, intron 2 of 37)	B2_Mm2|SINE|B2	22115.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	1.35830377247157	2.84127471845765	1.20209648506158	2.58426848905212	1.99307759089421	2.69407697565044	1.69385813949643	1.8163778920417	-0.213050912925171	0.836753161847345	0.998431161219273
Merged-chr13-102665365-4	chr13	102665262	102665462	+	998.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-28185.0	NM_001360519	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141436717-3	chr7	141436608	141436808	+	907.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360724, intron 1 of 9)	intron (NM_001360724, intron 1 of 9)	1166.0	NM_026646	68267.0	Mm.33729	NM_026646	ENSMUSG00000019082	Slc25a22	1300006L01Rik|AI060884|Gc1	solute carrier family 25 (mitochondrial carrier, glutamate), member 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-119897528-3	chr2	119897426	119897626	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013720, intron 1 of 23)	CpG	298.0	NM_013720	29808.0	Mm.87532	NM_013720	ENSMUSG00000033943	Mga	AV312082|C130042M01Rik|C80739|D030062C11Rik|Mad5	MAX gene associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-104866012-2	chr3	104865912	104866112	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045578, intron 1 of 13)	intron (NR_045578, intron 1 of 13)	1506.0	NM_001253702	229681.0	Mm.206379	NM_153091	ENSMUSG00000045576	St7l	St7r	suppression of tumorigenicity 7-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-53265487-2	chr19	53265387	53265587	+	631.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10282.0	NR_036590	69319.0	Mm.57452	NR_036590		1700001K23Rik	-	RIKEN cDNA 1700001K23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-71931857-1	chr6	71931757	71931957	+	589.0	f0_balb.idr	intron (NM_009088, intron 12 of 33)	intron (NM_009088, intron 12 of 33)	22804.0	NM_009088	20019.0	Mm.135581	NM_009088	ENSMUSG00000049553	Polr1a	194kDa|2900087K15Rik|3010014K16Rik|RPA194|Rpo1-4|mRPA1	polymerase (RNA) I polypeptide A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-48217238-1	chr10	48217138	48217338	+	613.0	f1_balb.idr	Intergenic	Intergenic	1570699.0	NM_001358866	14806.0	Mm.185993	NM_010349	ENSMUSG00000056073	Grik2	AW124492|C130030K03Rik|GluK2|Glur-6|Glur6|Glurbeta2	glutamate receptor, ionotropic, kainate 2 (beta 2)	protein-coding	0.0804450944573856	-0.546571919332183	-0.0954075542714276	-0.553126768240406	-0.557153373867139	-0.545736798247731	-0.549457782891307	-0.552628580148565	-3.41605350555988	0.215528136390678	1
Merged-chr11-107452295-2	chr11	107452195	107452395	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 1 of 9)	Lx7|LINE|L1	18425.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-59867399-4	chr13	59867277	59867477	+	954.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44230.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36405892-2	chr18	36405792	36405992	+	708.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026027, intron 3 of 3)	intron (NM_026027, intron 3 of 3)	48603.0	NM_026027	67199.0	Mm.30184	NM_026027	ENSMUSG00000024346	Pfdn1	2700086I23Rik|AA408327|AU044714	prefoldin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-150820311-2	chr2	150820211	150820411	+	562.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153781, intron 13 of 19)	intron (NM_153781, intron 13 of 19)	22259.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-87973843-2	chr17	87973743	87973943	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-1207.0	NM_010830	17688.0	Mm.18210	NM_010830	ENSMUSG00000005370	Msh6	AU044881|AW550279|GTBP|Gtmbp	mutS homolog 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-35117717-4	chr12	35117607	35117807	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001014973, intron 17 of 25)	intron (NM_001014973, intron 17 of 25)	70518.0	NM_001014973	217463.0	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	-0.973244663428994	-0.952315594721777	-0.00450891433157474	-0.968117103546747	-0.972477992091202	-0.949249181104308	-0.963262521912125	-0.967581074445158	-3.30458610020401	0.291235735201707	1
Merged-chr4-150281538-4	chr4	150281425	150281625	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001085492)	promoter-TSS (NM_001085492)	-391.0	NM_001085492	68703.0	Mm.291274	NM_001085492	ENSMUSG00000039852	Rere	1110033A15Rik|AI414665|ARG|ARP|ATN1L|AW742570|Atr2|DNB1|eye<m03Jus>|eyes3|mKIAA0458	arginine glutamic acid dipeptide (RE) repeats	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-44623438-1	chr15	44623338	44623538	+	599.0	f0_c57.idr	intron (NM_019480, intron 1 of 6)	intron (NM_019480, intron 1 of 6)	3797.0	NM_019480	55960.0	Mm.287896	NM_019480	ENSMUSG00000022339	Ebag9	AI835379|Rcas1	estrogen receptor-binding fragment-associated gene 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-75797838-2	chr15	75797738	75797938	+	824.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_172121, intron 4 of 11)	intron (NM_172121, intron 4 of 11)	44070.0	NM_172121	223642.0	Mm.209800	NM_172121	ENSMUSG00000075600	Zc3h3	BC049953|Kiaa0150|Smicl|Zc3hdc3	zinc finger CCCH type containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-155832109-2	chr4	155831987	155832187	+	939.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_025338, intron 2 of 3)	CpG-10779	818.0	NM_025338	66077.0	Mm.28999	NM_025338	ENSMUSG00000065990	Aurkaip1	0610033H09Rik|Aip|Akip|MRP-S38	aurora kinase A interacting protein 1	protein-coding	0.202114483966415	0.064906765372332	0.252222901134118	0.516241221714199	1.09764272334764	0.0664613688678815	0.0595118615536053	0.0535422095161657	0.947501165058389	0.639784680374297	1
Merged-chr17-84092016-2	chr17	84091916	84092116	+	577.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TTTG)n|Simple_repeat|Simple_repeat	13356.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-11674545-2	chr18	11674445	11674645	+	695.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045527, intron 3 of 17)	B3|SINE|B2	17196.0	NM_001081223	225182.0	Mm.154275	NM_175458	ENSMUSG00000041238	Rbbp8	9930104E21Rik|CtIP|RBBP-8|RIM|SAE2	retinoblastoma binding protein 8, endonuclease	protein-coding	-1.26158838883041	-1.23491885943196	-0.932285682414493	-1.253498770181	-0.991415215585255	-1.23270831899588	-1.24281036665307	-1.25199890057848	-0.196493622954895	0.95427149369431	1
Merged-chr16-81850417-2	chr16	81850317	81850517	+	708.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	649720.0	NM_010954	17968.0	Mm.433941	NM_010954	ENSMUSG00000022762	Ncam2	Ncam-2|Ocam|RNCAM	neural cell adhesion molecule 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131963834-4	chr1	131963735	131963935	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177628, intron 1 of 4)	intron (NM_001177628, intron 1 of 4)	920.0	NM_001177628	212980.0	Mm.200307	NM_145977	ENSMUSG00000026435	Slc45a3	2210413P12Rik|AU023994|AU043764|IPCA-6|PRST|Pcanap6	solute carrier family 45, member 3	protein-coding	3.22504857294561	3.52346757950222	3.57495868669013	3.62273794907751	3.59874613633932	3.23589115858023	3.81818770129135	3.70740144634421	0.182558397423416	0.723692174341923	0.998431161219273
Merged-chr6-114877032-2	chr6	114876932	114877132	+	672.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356371, intron 3 of 5)	intron (NM_001356371, intron 3 of 5)	44789.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-88653519-3	chr8	88653424	88653624	+	655.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145857, intron 2 of 12)	intron (NM_145857, intron 2 of 12)	6177.0	NM_145857	257632.0	Mm.222633	NM_145857	ENSMUSG00000055994	Nod2	ACUG|BLAU|CD|Card15|F830032C23Rik|IBD1|Nlrc2	nucleotide-binding oligomerization domain containing 2	protein-coding	0.680778362406095	1.06709733482651	0.411422621678558	0.404876444301353	0.805735465757582	0.421745236427684	1.23025299572617	0.584697036649239	0.673059867361462	0.693074956979831	1
Merged-chr18-38335353-2	chr18	38335253	38335453	+	630.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_011937, intron 2 of 6)	intron (NM_011937, intron 2 of 6)	3640.0	NM_011937	26384.0	Mm.22374	NM_011937	ENSMUSG00000052102	Gnpda1	GNPDA|Gnp1|Gnpi|oscillin	glucosamine-6-phosphate deaminase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-78163578-2	chr13	78163478	78163678	+	947.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_001163419, exon 10 of 10)	exon (NM_001163419, exon 10 of 10)	32871.0	NM_001347538	13865.0	Mm.439653	NM_010151	ENSMUSG00000069171	Nr2f1	COUP-TF1|COUP-TFI|COUPTFA|EAR-3|EAR3|Erbal3|SVP44|Tcfcoup1	nuclear receptor subfamily 2, group F, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117462959-2	chr8	117462859	117463059	+	937.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3694.0	NR_106046	102465653.0		NR_106046	ENSMUSG00000098483	Mir7078	Gm27386|mmu-mir-7078	microRNA 7078	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131393876-3	chr1	131393779	131393979	+	829.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081011, intron 4 of 22)	intron (NM_001081011, intron 4 of 22)	-114316.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	1.68693334577871	2.65074112121385	1.17575821614197	2.56193506626201	1.53756851517944	2.67153030780862	1.18309916528186	2.40285103390603	-0.153361562547142	0.88776063713632	0.998431161219273
Merged-chr6-120090663-4	chr6	120090562	120090762	+	847.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2718.0	NM_016718	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-19833211-1	chr13	19833111	19833311	+	551.0	f0_balb.idr	Intergenic	Intergenic	-8954.0	NM_181754	353346.0	Mm.239268	NM_181754	ENSMUSG00000053101	Gpr141	PGR13	G protein-coupled receptor 141	protein-coding	0.974416708443693	0.838622489842524	0.821940600509084	1.59518479861338	1.78429335283425	1.60497500605236	2.04117325291991	0.811123666135443	1.90212151781459	0.172263118408774	0.640342426440101
Merged-chr3-95660386-2	chr3	95660286	95660486	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008562, intron 2 of 2)	intron (NM_008562, intron 2 of 2)	1665.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-13787108-4	chr18	13786918	13787118	+	799.224976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360804, intron 5 of 7)	intron (NM_001360804, intron 5 of 7)	185715.0	NM_001360804	225207.0	Mm.40325	NM_145492	ENSMUSG00000024420	Zfp521	B930086A16Rik|Evi3|Znf521	zinc finger protein 521	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-125240753-4	chr8	125240711	125240911	+	921.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_174854, intron 11 of 12)	B3A|SINE|B2	186616.0	NM_174854	244667.0	Mm.233504	NM_170596	ENSMUSG00000043051	Disc1	-	disrupted in schizophrenia 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64835460-4	chr5	64835372	64835572	+	990.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31949.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-68363409-4	chr15	68363319	68363519	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22130.0	NR_029718	387228.0		NR_029718	ENSMUSG00000065437	Mir30d	Mirn30d|mir-30d|mmu-mir-30d	microRNA 30d	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-15064324-4	chr14	15064218	15064418	+	887.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	243503.0	NM_001195229	674895.0	Mm.317563	NM_001034865	ENSMUSG00000042567	Nek10	Gm282	NIMA (never in mitosis gene a)- related kinase 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-46724581-2	chr13	46724481	46724681	+	953.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_175749, intron 1 of 21)	intron (NM_175749, intron 1 of 21)	3268.0	NM_175749	218210.0	Mm.255398	NM_175749	ENSMUSG00000021374	Nup153	B130015D15Rik|C88147	nucleoporin 153	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-92561334-8	chr7	92561238	92561438	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001162918, exon 1 of 8)	5' UTR (NM_001162918, exon 1 of 8)	189.0	NM_001162918	66365.0	Mm.21173	NM_025515	ENSMUSG00000030613	Ccdc90b	2310015N07Rik|C86558	coiled-coil domain containing 90B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55579645-2	chr14	55579545	55579745	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011189, intron 2 of 10)	intron (NM_011189, intron 2 of 10)	1151.0	NM_011189	19186.0	Mm.830	NM_011189	ENSMUSG00000022216	Psme1	AW413925|PA28a	proteasome (prosome, macropain) activator subunit 1 (PA28 alpha)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-37217414-2	chr13	37217324	37217524	+	889.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-127921.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	0.56612545214846	0.618988072293323	0.602239229068023	1.71668037409465	0.777159047580947	0.622694490757751	1.96696157692388	1.53931200494688	1.18672984875805	0.456534878200037	0.919264728457769
Merged-chr11-114896722-3	chr11	114896633	114896833	+	783.299988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_170758, intron 3 of 6)	intron (NM_170758, intron 3 of 6)	6692.0	NM_170758	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-118866051-4	chr10	118865938	118866138	+	998.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001014390, intron 2 of 2)	intron (NM_001014390, intron 2 of 2)	2865.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45723546-2	chr7	45723446	45723646	+	754.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_001033170, exon 2 of 5)	exon (NM_001033170, exon 2 of 5)	2270.0	NM_027055	69363.0	Mm.45607	NM_027055	ENSMUSG00000070563	Spaca4	1700008E09Rik|AV043694|Samp14	sperm acrosome associated 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-114621214-1	chr9	114621114	114621314	+	551.0	f1_c57bl6.idr	intron (NM_153585, intron 8 of 19)	intron (NM_153585, intron 8 of 19)	18986.0	NM_153585	78893.0	Mm.283708	NM_153585	ENSMUSG00000056167	Cnot10	2600001P13Rik	CCR4-NOT transcription complex, subunit 10	protein-coding	1.91048788972667	1.52592645723517	0.486029526808482	1.03448481118749	0.659715297194174	0.503863938479299	0.489283503803901	0.476520950509913	-4.16099591924334	0.0136554501842395	0.13594884435797
Merged-chr2-12024094-3	chr2	12023992	12024192	+	700.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	246339.0	NM_177268	320816.0	Mm.260201	NM_177268	ENSMUSG00000047909	Ankrd16	2810455F06Rik|AI646698|D430029B21Rik	ankyrin repeat domain 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-23728206-3	chr13	23728056	23728256	+	891.044434	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus1|LINE|L1	-10651.0	NM_015786	50708.0	Mm.193539	NM_015786	ENSMUSG00000036181	Hist1h1c	0610008C09Rik|H1.2|H1c|H1f2|H1var1|His1a	histone cluster 1, H1c	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-23981482-2	chr16	23981382	23981582	+	661.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001348026)	promoter-TSS (NM_001348026)	-199.0	NM_001348026	12053.0	Mm.347398	NM_009744	ENSMUSG00000022508	Bcl6	Bcl5	B cell leukemia/lymphoma 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-100587818-4	chr5	100587706	100587906	+	982.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15601.0	NM_139198	231507.0	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-108265855-2	chr9	108265755	108265955	+	551.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	-1897.0	NM_001276485	13138.0	Mm.7524	NM_010017	ENSMUSG00000039952	Dag1	D9Wsu13e|DG|Dp427|Dp71	dystroglycan 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-106004882-3	chr8	106004775	106004975	+	911.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	-6603.0	NM_025518	66369.0	Mm.287500	NM_025518	ENSMUSG00000031901	Dus2	2310016K04Rik|Dus2l	dihydrouridine synthase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-126696767-4	chr3	126696693	126696893	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025438, intron 3 of 18)	intron (NM_001025438, intron 3 of 18)	99842.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	4.09138537725484	4.06177659417245	4.60771539784594	4.69210207300895	3.21816741218129	3.64414092110916	4.98737999439785	4.63620802781431	-0.113353271761403	0.815588016020487	0.998431161219273
Merged-chr17-25873564-2	chr17	25873464	25873664	+	771.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1936.0	NM_026686	68347.0	Mm.35098	NM_026686	ENSMUSG00000025731	Mettl26	0610011F06Rik	methyltransferase like 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97130861-2	chr11	97130761	97130961	+	781.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15530.0	NM_019507	57765.0	Mm.94519	NM_019507	ENSMUSG00000001444	Tbx21	TBT1|Tbet|Tblym	T-box 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-156524271-4	chr2	156524184	156524384	+	968.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291122, intron 14 of 20)	intron (NM_001291122, intron 14 of 20)	-23292.0	NM_026661	68295.0	Mm.253648	NM_026661	ENSMUSG00000027628	Aar2	0610011L14Rik	AAR2 splicing factor homolog	protein-coding	-1.17367364971587	-1.14665061133654	-1.15856004380685	-1.16834280623128	-1.17310571790619	-1.14406978763884	-0.42938571406771	-1.16659169643457	2.89727187181404	0.396361616615464	1
Merged-chr8-40408112-3	chr8	40408029	40408229	+	716.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15686.0	NM_178395	70546.0	Mm.34326	NM_178395	ENSMUSG00000039470	Zdhhc2	5730415P04Rik|6430583A19Rik|DHHC-2	zinc finger, DHHC domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-156234400-2	chr4	156234300	156234500	+	990.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198305, intron 1 of 11)	intron (NM_198305, intron 1 of 11)	457.0	NM_198305	231003.0	Mm.423038	NM_198305	ENSMUSG00000078485	Klhl17	AL022703|BC058738	kelch-like 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-72207504-4	chr11	72207400	72207600	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026559)	promoter-TSS (NM_026559)	-18.0	NR_155066	74477.0	Mm.289697	NM_028963	ENSMUSG00000020807	4933427D14Rik	C85113|Kiaa0753|MNR	RIKEN cDNA 4933427D14 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-36696503-1	chr13	36696403	36696603	+	600.0	f0_c57.idr	Intergenic	Intergenic	37974.0	NM_153529	68404.0	Mm.232930	NM_153529	ENSMUSG00000039114	Nrn1	0710008J23Rik|Cpg15|Nrn	neuritin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-35559265-4	chr15	35559177	35559377	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177151, intron 19 of 61)	intron (NM_177151, intron 19 of 61)	101641.0	NR_035527	100316736.0		NR_035527	ENSMUSG00000076333	Mir599	mmu-mir-599	microRNA 599	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117342587-3	chr8	117342493	117342693	+	944.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	-6577.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-23975765-1	chr17	23975665	23975865	+	564.0	f1_c57bl6.idr	promoter-TSS (NM_013921)	promoter-TSS (NM_013921)	-535.0	NM_013921	30943.0	Mm.142568	NM_013921	ENSMUSG00000024124	Prss30	2010015P21Rik|Disp|Disp1|Tmprss8	protease, serine 30	protein-coding	-0.514955650435252	-0.485401506848408	-0.494503040531126	0.896896525207897	-0.512945642122282	-0.483419531282335	-0.492450805848337	-0.500578394190011	-4.81256315922615	0.156689400561485	0.61316354466298
Merged-chr8-126666655-4	chr8	126666507	126666707	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73171.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25266465-2	chr7	25266365	25266565	+	597.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1234.0	NM_001302811	71722.0	Mm.28833	NM_027882	ENSMUSG00000005442	Cic	1200010B10Rik|mKIAA0306	capicua transcriptional repressor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-22930292-3	chr11	22930160	22930360	+	777.866638	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361661, intron 2 of 2)	ORR1B1|LTR|ERVL-MaLR	-41745.0	NM_011663	22183.0	Mm.29542	NM_011663	ENSMUSG00000044068	Zrsr1	D11Ncvs75|Irlgs2|SP2|U2af1-rs1|U2afbp-rs	zinc finger (CCCH type), RNA binding motif and serine/arginine rich 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-18937977-2	chr8	18937877	18938077	+	679.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_176951, intron 5 of 6)	MER67B|LTR|ERV1	12894.0	NM_001286469	319581.0	Mm.111354	NM_176951	ENSMUSG00000039814	Xkr5	5430438H03Rik|XRG5	X-linked Kx blood group related 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150543831-1	chr4	150543731	150543931	+	617.0	f1_balb.idr	intron (NM_001085492, intron 11 of 22)	intron (NM_001085492, intron 11 of 22)	108343.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-49777658-4	chr18	49777546	49777746	+	846.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22045.0	NM_026854	68857.0	Mm.96010	NM_026854	ENSMUSG00000024505	Dtwd2	1190002H09Rik|8030470C17Rik|AI414673|BB115449	DTW domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-69451111-2	chr12	69451001	69451201	+	854.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24449.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	1.58275263762343	0.754528781212045	2.93002766473921	2.29742676158723	0.667556958007955	0.760812373271386	0.732223395189214	1.21480179040892	-4.12402052124183	0.0050756038951024	0.0677935482265512
Merged-chr7-110060016-2	chr7	110059916	110060116	+	760.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-1686.0	NM_009281	20841.0	Mm.10815	NM_009281	ENSMUSG00000061079	Zfp143	AA959806|AU015869|D7Ertd805e|KRAB14|SBF|Staf|Zfp79|Zfp80-rs1|Znf143|pHZ-1	zinc finger protein 143	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-122337703-3	chr9	122337612	122337812	+	937.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13904.0	NR_152865	67469.0	Mm.280254	NM_026179	ENSMUSG00000032540	Abhd5	1300003D03Rik|2010002J10Rik|CDS|CGI-58|IECN5|NCIE2	abhydrolase domain containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-17779745-2	chr10	17779645	17779845	+	644.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16474.0	NM_138628	378431.0	Mm.283493	NM_138628	ENSMUSG00000039891	Txlnb	2310001N14Rik|Mdp77	taxilin beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-103212971-2	chr11	103212871	103213071	+	713.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177801, intron 1 of 4)	B1_Mus2|SINE|Alu	-4423.0	NM_001254724	69441.0	Mm.380648	NM_027082	ENSMUSG00000020940	1700023F06Rik	-	RIKEN cDNA 1700023F06 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100879810-3	chr7	100879711	100879911	+	764.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081116, intron 13 of 20)	intron (NM_001081116, intron 13 of 20)	2598.0	NR_037289	100526508.0		NR_037289	ENSMUSG00000093296	Mir3102	mmu-mir-3102	microRNA 3102	ncRNA	2.41265532637697	1.4546333725294	2.24421453351404	3.17142100902226	2.21204605130832	1.97987727515271	2.84083147152415	3.12559079139277	0.299324719384384	0.733531537758883	0.998431161219273
Merged-chr11-97994764-5	chr11	97994611	97994811	+	948.9381099999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207231, intron 2 of 5)	intron (NM_207231, intron 2 of 5)	1462.0	NM_207231	217151.0	Mm.277896	NM_207231	ENSMUSG00000038352	Arl5c	Arl12|BC065791	ADP-ribosylation factor-like 5C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127669465-2	chr10	127669365	127669565	+	904.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_045171)	TTS (NR_045171)	2342.0	NR_045171	72243.0	Mm.482902	NR_045171	ENSMUSG00000040195	1700012D01Rik	-	RIKEN cDNA 1700012D01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-30212665-2	chr17	30212565	30212765	+	872.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	183515.0	NR_030688	623169.0	Mm.440508	NR_030688		Gm6402	EG623169	ribosomal protein S17 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97381047-2	chr6	97380976	97381176	+	918.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 6 of 23)	PB1D10|SINE|Alu	78210.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	-0.38645844748378	-0.3760767999794	-0.217598958428653	0.00809884904922273	-0.385816800830107	-0.375301513102335	-0.213409293832755	0.0135007495334407	0.0320474547424926	0.989374544193778	1
Merged-chr14-30322510-3	chr14	30322410	30322610	+	743.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083616, intron 3 of 46)	intron (NM_001083616, intron 3 of 46)	30976.0	NM_001302637	12289.0	Mm.9772	NM_028981	ENSMUSG00000015968	Cacna1d	8430418G19Rik|C79217|Cach3|Cacn4|Cacnl1a2|Cav1.3|Cchl1a|Cchl1a2|D-LTCC	calcium channel, voltage-dependent, L type, alpha 1D subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-74166210-1	chr16	74166110	74166310	+	554.0	f1_balb.idr	intron (NM_001358493, intron 2 of 28)	intron (NM_001358493, intron 2 of 28)	175857.0	NR_030464	751561.0		NR_030464	ENSMUSG00000104758	Mir691	Mirn691|mir-691|mmu-mir-691	microRNA 691	ncRNA	0.185707043026013	-0.178650416759887	-0.18356085143614	-0.187351423145063	0.0827853160063506	-0.177543906566091	0.597860602751189	-0.186689081580579	1.70204022828318	0.472655962039439	1
Merged-chr4-24897041-4	chr4	24896926	24897126	+	862.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1057.0	NM_026742	68493.0	Mm.204831	NM_026742	ENSMUSG00000028261	Ndufaf4	1110007M04Rik|3000003G13Rik|AW214064	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-51092389-3	chr14	51092418	51092618	+	810.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021472, intron 1 of 1)	intron (NM_021472, intron 1 of 1)	1441.0	NM_021472	58809.0	Mm.202665	NM_021472	ENSMUSG00000021876	Rnase4	C730049F20Rik|Rab1	ribonuclease, RNase A family 4	protein-coding	-0.831139212782156	-0.820888727141004	-0.824743134031066	-0.193579325930709	-0.556091360766699	-0.818072351525316	-0.8240547280385	-0.826729445305636	-1.35240780352596	0.656284960157484	1
Merged-chr12-3361491-2	chr12	3361391	3361591	+	686.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID|SINE|ID	-3641.0	NM_008445	16570.0	Mm.7688	NM_008445	ENSMUSG00000020668	Kif3c	mKIAA4058	kinesin family member 3C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-125113259-2	chr4	125113159	125113359	+	899.833374	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001290701)	TTS (NM_001290701)	14622.0	NM_153159	230738.0	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55667972-1	chr19	55667872	55668072	+	547.0	f1_balb.idr	intron (NR_045318, intron 2 of 3)	Charlie4a|DNA|hAT-Charlie	34232.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114687259-2	chr11	114687159	114687359	+	749.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_053273, intron 2 of 13)	B1_Mus2|SINE|Alu	11791.0	NM_053273	117160.0	Mm.271934	NM_053273	ENSMUSG00000034714	Ttyh2	1110001A03Rik	tweety family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-137831298-4	chr5	137831221	137831421	+	928.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_153510, exon 3 of 7)	exon (NM_153510, exon 3 of 7)	4957.0	NM_153510	231805.0	Mm.379385	NM_153510	ENSMUSG00000046245	Pilra	AV021745|FDF03	paired immunoglobin-like type 2 receptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-9509062-3	chr18	9508971	9509171	+	764.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TCCTG)n|Simple_repeat|Simple_repeat	-58917.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-71821362-4	chr12	71821226	71821426	+	855.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9742.0	NM_026102	208846.0	Mm.87417	NM_026102	ENSMUSG00000034574	Daam1	-	dishevelled associated activator of morphogenesis 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-19995811-3	chr14	19995725	19995925	+	750.522217	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16|LTR|ERVK	-18576.0	NM_001285909	14702.0	Mm.41737	NM_010315	ENSMUSG00000043004	Gng2	-	guanine nucleotide binding protein (G protein), gamma 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-62448708-2	chr10	62448608	62448808	+	592.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027926)	promoter-TSS (NR_027926)	-452.0	NR_027926	74706.0	Mm.402550	NR_027926	ENSMUSG00000097129	4930507D05Rik	-	RIKEN cDNA 4930507D05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-90451027-3	chr3	90450955	90451155	+	892.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008727, exon 22 of 22)	3' UTR (NM_008727, exon 22 of 22)	14811.0	NM_008727	18160.0	Mm.4627	NM_008727	ENSMUSG00000027931	Npr1	AI893888|GC-A|NPR-A|NPRA|Pndr	natriuretic peptide receptor 1	protein-coding	0.904137727136544	0.843355222066755	1.00176008717531	0.564876343548465	0.547377712051372	1.91261712975072	1.65263200345246	0.567000489256474	1.91477465781028	0.21160284377353	0.700512509175108
Merged-chr11-70790033-4	chr11	70789961	70790161	+	937.2708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001045526)	TTS (NM_001045526)	22500.0	NM_001045526	327957.0	Mm.164325	NM_001045526	ENSMUSG00000057135	Scimp	A430084P05Rik	SLP adaptor and CSK interacting membrane protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-6248822-2	chr9	6248722	6248922	+	640.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357397, intron 1 of 6)	GA-rich|Low_complexity|Low_complexity	17725.0	NM_027942	71829.0	Mm.141452	NM_027942	ENSMUSG00000047619	Ddi1	1700011N24Rik	DNA-damage inducible 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-29007422-4	chr7	29007335	29007535	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009109, intron 101 of 105)	intron (NM_009109, intron 101 of 105)	24581.0	NM_008279	26411.0	Mm.148278	NM_008279	ENSMUSG00000037337	Map4k1	Hpk1|mHPK1	mitogen-activated protein kinase kinase kinase kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-56076037-3	chr8	56075946	56076146	+	896.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080438, intron 5 of 9)	intron (NM_080438, intron 5 of 9)	135221.0	NM_080438	110304.0	Mm.307061	NM_080438	ENSMUSG00000038257	Glra3	-	glycine receptor, alpha 3 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-25401096-1	chr9	25400996	25401196	+	773.0	f0_balb.idr	Intergenic	RLTR26|LTR|ERVK	-80501.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-24134955-2	chr1	24134855	24135055	+	567.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-34614.0	NM_026604	68187.0	Mm.87130	NM_026604	ENSMUSG00000026153	Fam135a	4921533L14Rik|AI256732|AI835491	family with sequence similarity 135, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-45208814-2	chr9	45208702	45208902	+	619.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001198971, intron 1 of 4)	MTC|LTR|ERVL-MaLR	-4727.0	NM_145403	214523.0	Mm.436756	NM_145403	ENSMUSG00000032091	Tmprss4	mCAP2	transmembrane protease, serine 4	protein-coding	0.978694236697301	1.93446148335166	0.890778289511251	1.31315424936741	0.641677643336968	1.43490148352863	0.672653168749735	0.870367122675541	-1.60308068653637	0.26311870398774	0.764706432349876
Merged-chr2-129630694-4	chr2	129630634	129630834	+	854.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001291021, exon 6 of 6)	3' UTR (NM_001291021, exon 6 of 6)	35272.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	-0.0453236862467476	-0.166788347163987	-0.17103803888912	0.330343064691097	0.360913672679563	-0.165828011075298	-0.170102225797406	-0.0167380467789916	0.153645158645931	0.945577459459784	1
Merged-chr5-76906055-4	chr5	76905947	76906147	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173765)	promoter-TSS (NM_173765)	-533.0	NM_173765	231326.0	Mm.39271	NM_173765	ENSMUSG00000055923	Aasdh	A230062G08Rik|A830035E16|Acsf4|U26	aminoadipate-semialdehyde dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-46162042-1	chr18	46161942	46162142	+	745.0	f0_c57.idr	Intergenic	RLTR11A2|LTR|ERVK	36776.0	NM_001170855	28105.0	Mm.277382	NM_178872	ENSMUSG00000033949	Trim36	D18Wsu100e|haprin	tripartite motif-containing 36	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43039065-8	chr4	43038909	43039109	+	883.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045567, intron 1 of 7)	intron (NR_045567, intron 1 of 7)	1292.0	NM_001253353	230088.0	Mm.260162	NM_172691	ENSMUSG00000036002	Fam214b	B230312A22Rik	family with sequence similarity 214, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70039663-2	chr11	70039563	70039763	+	864.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_007864, intron 10 of 19)	intron (NM_007864, intron 10 of 19)	-14461.0	NM_001291131	11889.0	Mm.6559	NM_009714	ENSMUSG00000020884	Asgr1	ASGPR1|Asgr|Asgr-1|HL-1	asialoglycoprotein receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-60941986-3	chr19	60941898	60942098	+	779.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018869, intron 1 of 15)	intron (NM_018869, intron 1 of 15)	52249.0	NM_018869	14773.0	Mm.279400	NM_018869	ENSMUSG00000003228	Grk5	Gprk5	G protein-coupled receptor kinase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-5895413-4	chr2	5895295	5895495	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356411)	promoter-TSS (NM_001356411)	37.0	NM_021305	57743.0	Mm.21435	NM_021305	ENSMUSG00000025816	Sec61a2	-	Sec61, alpha subunit 2 (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-63116070-2	chr14	63115970	63116170	+	602.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6392.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-58534571-4	chr2	58534490	58534690	+	968.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110204, intron 2 of 12)	intron (NM_001110204, intron 2 of 12)	26820.0	NM_001355049	11477.0	Mm.689	NM_007394	ENSMUSG00000026836	Acvr1	ALK2|ActR-I|ActRIA|Acvr|Acvrlk2|Alk-2|Alk8|D330013D15Rik|SKR1|Tsk7L	activin A receptor, type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-73421512-4	chr15	73421423	73421623	+	983.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358046, intron 1 of 34)	intron (NM_001358046, intron 1 of 34)	1668.0	NM_007982	14083.0	Mm.254494	NM_007982	ENSMUSG00000022607	Ptk2	FADK 1|FAK|FRNK|Fadk|p125FAK	PTK2 protein tyrosine kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128807359-2	chr10	128807259	128807459	+	651.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001359824, exon 2 of 7)	exon (NM_001359824, exon 2 of 7)	1683.0	NM_001359824	74330.0	Mm.296915	NM_028873	ENSMUSG00000025354	Dnajc14	5730551F12Rik|DNAJ|DRIP78|HDJ3|LIP6	DnaJ heat shock protein family (Hsp40) member C14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-62751880-1	chr5	62751780	62751980	+	557.0	f0_balb.idr	intron (NM_178407, intron 1 of 32)	intron (NM_178407, intron 1 of 32)	14297.0	NM_178407	212285.0	Mm.244403	NM_178407	ENSMUSG00000037999	Arap2	Centd1|Gm148|mKIAA0580	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70980513-2	chr11	70980413	70980613	+	642.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007573, intron 2 of 5)	intron (NM_007573, intron 2 of 5)	2513.0	NM_007573	12261.0	Mm.30049	NM_007573	ENSMUSG00000018446	C1qbp	AA407365|AA986492|D11Wsu182e|HABP1|P32|gC1qBP	complement component 1, q subcomponent binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69390030-2	chr11	69389930	69390130	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5316.0	NM_001045525	327951.0	Mm.415669	NM_001045525	ENSMUSG00000044795	Cyb5d1	Gm740	cytochrome b5 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-156839988-4	chr2	156839899	156840099	+	842.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173396)	promoter-TSS (NM_173396)	-8.0	NM_001291124	228839.0	Mm.315625	NM_173396	ENSMUSG00000062175	Tgif2	4921501K24|5730599O09Rik|C80753|C81206	TGFB-induced factor homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-95268191-2	chr1	95268091	95268291	+	701.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45437.0	NM_026321	67698.0	Mm.272705	NM_026321	ENSMUSG00000051185	Fam174a	2310044D20Rik|Fam174|Naa6|Tmem157	family with sequence similarity 174, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55520958-2	chr14	55520858	55521058	+	573.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271916, intron 3 of 3)	intron (NM_001271916, intron 3 of 3)	3294.0	NM_008736	18185.0	Mm.20422	NM_008736	ENSMUSG00000040632	Nrl	D14H14S46E	neural retina leucine zipper gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-111942958-2	chr13	111942858	111943058	+	725.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR17B_Mm|LTR|ERVK	75022.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-40928712-3	chr14	40928576	40928776	+	841.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145928, intron 2 of 8)	intron (NM_145928, intron 2 of 8)	19533.0	NM_001316748	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-91962379-4	chr5	91962293	91962493	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028429)	promoter-TSS (NR_028429)	163.0	NR_073442	68098.0	Mm.159453	NM_026557	ENSMUSG00000029397	Rchy1	ARNIP|CHIMP|Pirh2|Zfp363|Znf363	ring finger and CHY zinc finger domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118649642-4	chr9	118649537	118649737	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 4 of 27)	intron (NM_133721, intron 4 of 27)	42928.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	4.19004740450457	3.35538941965356	3.55410794500063	4.25525482163849	3.9811321545371	4.43122715730126	4.54240619426279	4.2247203667257	0.538433812204604	0.231884489250652	0.72653641243802
Merged-chr5-117319190-4	chr5	117319094	117319294	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033311)	promoter-TSS (NM_001033311)	-72.0	NM_001033311	231668.0	Mm.298603	NM_001033311	ENSMUSG00000066894	Vsig10	-	V-set and immunoglobulin domain containing 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-56611319-4	chr13	56611217	56611417	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155548, intron 1 of 16)	intron (NR_155548, intron 1 of 16)	1731.0	NR_155548	21810.0	Mm.14455	NM_009369	ENSMUSG00000035493	Tgfbi	68kDa|AI181842|AI747162|Beta-ig|big-h3	transforming growth factor, beta induced	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-137958986-1	chr4	137958886	137959086	+	542.0	f1_balb.idr	intron (NM_199307, intron 18 of 19)	ORR1E|LTR|ERVL-MaLR	-34470.0	NM_001256198	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	-2.18292257394068	-2.15545247547656	-2.03304972317742	-2.17058342868585	-2.18099422382073	-2.1536522739386	-2.16187909550322	-2.16936197735154	-0.683654500252594	0.846597994014493	1
Merged-chr10-121362602-2	chr10	121362502	121362702	+	587.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2488.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	0.969785789485097	0.814816034251593	1.06239522381965	0.909391878039287	0.870307508927774	0.629443444487242	1.0721053220488	1.03412081567166	-0.141002626770227	0.921253611256229	1
Merged-chr18-34373343-8	chr18	34373363	34373563	+	937.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007874)	promoter-TSS (NM_007874)	-48.0	NM_007874	13476.0	Mm.280075	NM_007874	ENSMUSG00000005873	Reep5	AI324241|AU022809|AW495741|DP1/TB2|Dp1|R74856|TB2/DP1	receptor accessory protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-108808209-4	chr12	108808096	108808296	+	868.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009537, intron 2 of 4)	intron (NM_009537, intron 2 of 4)	14885.0	NM_009537	22632.0	Mm.3868	NM_009537	ENSMUSG00000021264	Yy1	AW488674|NF-E1	YY1 transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122777219-2	chr5	122777119	122777319	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199676, intron 1 of 16)	intron (NM_001199676, intron 1 of 16)	2191.0	NM_001199676	207565.0	Mm.289237	NM_145358	ENSMUSG00000029471	Camkk2	6330570N16Rik|AW061083|mKIAA0787	calcium/calmodulin-dependent protein kinase kinase 2, beta	protein-coding	0.386901844593438	0.605632233706933	0.695720896846704	0.25939565066283	0.391032623932041	0.6129881943379	0.704988277091877	0.260172009881523	0.0403027732720217	0.981639743311174	1
Merged-chr11-3137449-4	chr11	3137329	3137529	+	905.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030207, intron 22 of 32)	intron (NM_030207, intron 22 of 32)	13408.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45437551-2	chr7	45437451	45437651	+	867.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030678, intron 2 of 15)	intron (NM_030678, intron 2 of 15)	2712.0	NM_030678	14936.0	Mm.275654	NM_030678	ENSMUSG00000003865	Gys1	Gys3|MGS	glycogen synthase 1, muscle	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-14054831-2	chr10	14054731	14054931	+	672.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358783, intron 2 of 12)	intron (NM_001358783, intron 2 of 12)	88452.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-60982188-4	chr18	60982107	60982307	+	896.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177407, intron 16 of 17)	intron (NM_177407, intron 16 of 17)	18653.0	NM_001286809	12322.0	Mm.131530	NM_009792	ENSMUSG00000024617	Camk2a	CaMKII|R74975|mKIAA0968	calcium/calmodulin-dependent protein kinase II alpha	protein-coding	3.35815164219283	2.18478810091064	2.95406107330794	3.34769548124091	3.20886075099646	2.56804294633402	2.31766481400173	3.14965271248257	-0.312515843755505	0.656861525882076	0.988505467120973
Merged-chr9-75313545-2	chr9	75313445	75313645	+	838.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138719)	promoter-TSS (NM_138719)	-523.0	NR_073186	14697.0	Mm.17604	NM_010313	ENSMUSG00000032192	Gnb5	GBS|Gbeta5|flr	guanine nucleotide binding protein (G protein), beta 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-60291456-2	chr10	60291356	60291556	+	667.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001146124, intron 1 of 13)	intron (NM_001146124, intron 1 of 13)	6995.0	NM_001146124	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-67715864-4	chr14	67715742	67715942	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001110162)	promoter-TSS (NM_001110162)	-1.0	NM_175384	108912.0	Mm.33831	NM_175384	ENSMUSG00000048922	Cdca2	2610311M19Rik|AI586158	cell division cycle associated 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-76287935-4	chr14	76287836	76288036	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36474.0	NR_152108	72893.0	Mm.233565	NR_152108		2900040C04Rik	-	RIKEN cDNA 2900040C04 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6084986-4	chr19	6084868	6085068	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026410)	promoter-TSS (NM_026410)	7.0	NM_001356994	81909.0	Mm.289471	NM_024231	ENSMUSG00000024792	Zfpl1	-	zinc finger like protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-85592892-4	chr3	85592793	85592993	+	720.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144896, intron 2 of 12)	intron (NM_144896, intron 2 of 12)	18764.0	NM_144896	229487.0	Mm.52275	NM_144896	ENSMUSG00000028085	Gatb	9430026F02Rik|Pet112|Pet112l	glutamyl-tRNA(Gln) amidotransferase, subunit B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-61860866-4	chr14	61860761	61860961	+	854.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-178488.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-48994726-2	chr16	48994626	48994826	+	609.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356425)	promoter-TSS (NM_001356425)	538.0	NM_172616	224171.0	Mm.24491	NM_172616	ENSMUSG00000033031	C330027C09Rik	AA408511|AU018569|Cip2a|Kiaa1524	RIKEN cDNA C330027C09 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-6490066-4	chr18	6489962	6490162	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_035446)	TTS (NR_035446)	584.0	NR_035446	100316773.0		NR_035446	ENSMUSG00000084514	Mir1893	Mirn1893|mmu-mir-1893	microRNA 1893	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-173335283-1	chr2	173335183	173335383	+	832.0	f1_c57bl6.idr	Intergenic	Intergenic	-58750.0	NM_022995	65112.0	Mm.73682	NM_022995	ENSMUSG00000038400	Pmepa1	2210418I02Rik|AW455466|Erg1.2|N4wbp4|Stag1|Tmepai	prostate transmembrane protein, androgen induced 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97407552-3	chr6	97407439	97407639	+	870.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 5 of 23)	intron (NM_145148, intron 5 of 23)	51747.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118617486-4	chr9	118617407	118617607	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 1 of 27)	RLTR11C_MM|LTR|ERVK	10798.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-60742588-2	chr13	60742488	60742688	+	940.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 19 of 26)	intron (NM_134062, intron 19 of 26)	43776.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-164677214-2	chr2	164677109	164677309	+	653.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR49|LTR|ERVK	-3122.0	NM_001161806	629761.0	Mm.389336	NM_001161806	ENSMUSG00000078940	Wfdc11	-	WAP four-disulfide core domain 11	protein-coding	2.03977060892531	2.39280041457046	1.83642553994212	2.24571401239055	2.14857447902601	1.91017016980429	1.84994733099459	1.23811133295524	-0.84351778794742	0.391803995524889	0.880996748971749
Merged-chr11-114685588-2	chr11	114685509	114685709	+	656.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_053273, intron 1 of 13)	intron (NM_053273, intron 1 of 13)	10141.0	NM_053273	117160.0	Mm.271934	NM_053273	ENSMUSG00000034714	Ttyh2	1110001A03Rik	tweety family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-5639802-3	chr6	5639708	5639908	+	874.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-85831.0	NM_001191023	13426.0	Mm.20893	NM_010063	ENSMUSG00000029757	Dync1i1	DH IC-1|DHIC-1|DIC|Dncic1|IC74	dynein cytoplasmic 1 intermediate chain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-57114971-4	chr2	57114879	57115079	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013613)	promoter-TSS (NM_013613)	59.0	NM_013613	18227.0	Mm.3507	NM_013613	ENSMUSG00000026826	Nr4a2	HZF-3|NOT|Nurr1|RNR-1|TINOR|TINUR	nuclear receptor subfamily 4, group A, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-8323386-3	chr10	8323289	8323489	+	791.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177387, intron 3 of 7)	intron (NM_177387, intron 3 of 7)	195436.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-108579402-2	chr9	108579302	108579502	+	766.666687	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031392)	promoter-TSS (NM_031392)	-732.0	NM_031392	83669.0	Mm.335454	NM_031392	ENSMUSG00000066357	Wdr6	mWDR6	WD repeat domain 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-31176551-4	chr6	31176447	31176647	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110470, intron 2 of 2)	intron (NR_110470, intron 2 of 2)	41927.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-110424365-4	chr5	110424252	110424452	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142642, intron 2 of 18)	intron (NM_001142642, intron 2 of 18)	24151.0	NM_001317042	381668.0	Mm.348782	NM_028596	ENSMUSG00000043323	Fbrsl1	2410025L10Rik|AI467568|Gm1049|Gm29766|mKIAA1545	fibrosin-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-59003175-4	chr4	59003085	59003285	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033165)	promoter-TSS (NM_001033165)	-8.0	NM_001033165	72429.0	Mm.317801	NM_001033165	ENSMUSG00000070972	Dnajc25	2010109C08Rik|2010203O07Rik	DnaJ heat shock protein family (Hsp40) member C25	protein-coding	4.30679628776697	3.93065254369171	5.15063936704443	4.83483550526506	4.15246238422743	3.96021905008718	5.0909329549676	3.61617285071206	-0.395993538390466	0.391913095086282	0.880996748971749
Merged-chr7-122125299-2	chr7	122125199	122125399	+	871.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289844, intron 4 of 12)	intron (NM_001289844, intron 4 of 12)	7647.0	NM_001289844	233826.0	Mm.38348	NM_172744	ENSMUSG00000044702	Palb2	BC066140	partner and localizer of BRCA2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-66906106-4	chr13	66906015	66906215	+	987.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026219)	promoter-TSS (NM_026219)	700.0	NM_001177750	100038538.0	Mm.405005	NM_001177750	ENSMUSG00000074826	Gm10767	-	predicted gene 10767	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-17944270-4	chr13	17944172	17944372	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019491)	promoter-TSS (NM_019491)	-55.0	NM_019491	56044.0	Mm.27348	NM_019491	ENSMUSG00000008859	Rala	3010001O15Rik|AW322615|Ral|Rasl1	v-ral simian leukemia viral oncogene A (ras related)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-65396256-3	chr2	65396156	65396356	+	723.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31856.0	NR_105755	102466151.0		NR_105755	ENSMUSG00000099184	Mir6337	Gm27877|mmu-mir-6337	microRNA 6337	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94337764-1	chr10	94337664	94337864	+	843.6666869999999	f0_balb.idr	intron (NM_001359762, intron 1 of 4)	polypurine|Low_complexity|Low_complexity	25815.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	3.61455062238778	2.73650349125096	2.49419371242743	2.5640592552716	3.773842001374	3.32299820765808	2.34636233890729	3.02596906051454	0.459721422728139	0.509958787593125	0.944974548181628
Merged-chr12-83812104-2	chr12	83812004	83812204	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001272055, intron 2 of 8)	B3|SINE|B2	30254.0	NM_001272055	18222.0	Mm.4390	NM_010949	ENSMUSG00000021224	Numb	Nb	NUMB endocytic adaptor protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-76088663-4	chr11	76088559	76088759	+	838.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026664, intron 13 of 21)	intron (NM_026664, intron 13 of 21)	-60877.0	NM_029658	76566.0	Mm.34131	NM_029658	ENSMUSG00000020846	Rflnb	1500005K14Rik|Fam101b|RefilinB|cfm	refilin B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46299981-2	chr19	46299881	46300081	+	606.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-4756.0	NM_001177369	18034.0	Mm.102365	NM_019408	ENSMUSG00000025225	Nfkb2	NF-kappaB2|lyt|p49|p49/p100|p50B|p52	nuclear factor of kappa light polypeptide gene enhancer in B cells 2, p49/p100	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-87488071-1	chr6	87487971	87488171	+	1000.0	f1_c57bl6.idr	intron (NM_001037727, intron 4 of 10)	intron (NM_001037727, intron 4 of 10)	8256.0	NR_104483	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	0.98551072684381	0.728274134339057	0.853477609924534	0.68622273113533	1.16639406965021	0.537722064403656	0.529837494207648	1.0618856331095	0.262192275476098	0.867631597777489	1
Merged-chr10-80001823-2	chr10	80001723	80001923	+	966.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347081, intron 11 of 45)	intron (NM_001347081, intron 11 of 45)	4208.0	NM_013850	27403.0	Mm.103351	NM_013850	ENSMUSG00000035722	Abca7	ABCX|Abc51	ATP-binding cassette, sub-family A (ABC1), member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-108040985-4	chr11	108040872	108041072	+	761.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011101, intron 5 of 16)	intron (NM_011101, intron 5 of 16)	44124.0	NR_106082	102465705.0		NR_106082	ENSMUSG00000098989	Mir7223	Gm28009|mmu-mir-7223	microRNA 7223	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-177179850-3	chr1	177179757	177179957	+	695.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011785, intron 1 of 12)	intron (NM_011785, intron 1 of 12)	68910.0	NM_011785	23797.0	Mm.235194	NM_011785	ENSMUSG00000019699	Akt3	AI851531|D930002M15Rik|Nmf350	thymoma viral proto-oncogene 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-57433024-4	chr8	57432917	57433117	+	981.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22906.0	NM_009136	20284.0	Mm.12886	NM_009136	ENSMUSG00000031610	Scrg1	AW124307	scrapie responsive gene 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-78018992-3	chr10	78018882	78019082	+	918.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-9175.0	NM_001358793	18641.0	Mm.269649	NM_008826	ENSMUSG00000020277	Pfkl	AA407869|ATP-PFK|PFK-B|PFK-L	phosphofructokinase, liver, B-type	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117906637-4	chr10	117906466	117906666	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18893.0	NR_045342	71067.0	Mm.410793	NR_045342	ENSMUSG00000112500	4933411E08Rik	-	RIKEN cDNA 4933411E08 gene	ncRNA	4.46280443086647	4.63473442132926	4.09379873756023	4.2745127004318	4.41793062275993	4.39053395318094	4.74910535499866	3.78601241179795	-0.00440037570661382	0.991358199549076	0.998431161219273
Merged-chr6-128133861-3	chr6	128133729	128133929	+	955.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175414, intron 1 of 8)	intron (NM_175414, intron 1 of 8)	9749.0	NM_175414	109246.0	Mm.21814	NM_175414	ENSMUSG00000030352	Tspan9	6720474K14Rik|9430079M16Rik|AU018597|Tspan-9	tetraspanin 9	protein-coding	0.518346494192882	0.274287823177057	0.828861164478686	0.26301574458483	0.820218347216291	0.275722499168003	0.269327728159322	0.796386822546397	0.475896807438468	0.805299931233154	1
Merged-chr4-3834206-2	chr4	3834082	3834282	+	618.833374	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_026147, exon 4 of 4)	3' UTR (NM_026147, exon 4 of 4)	1473.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	3.03007875499617	2.50195926725725	3.37232765219698	3.56717947966945	3.47990186500035	2.5213232718946	3.87374773824852	3.37465907765208	0.357913287879595	0.568034266302236	0.962700130957844
Merged-chr4-149143772-3	chr4	149143683	149143883	+	852.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6183.0	NM_027263	69928.0	Mm.260893	NM_027263	ENSMUSG00000073705	Cenps	2610040C18Rik|2810407L01Rik|Apitd1|CENP-S	centromere protein S	protein-coding	3.15563503453622	2.33123943983776	2.9048325196297	3.62288077567587	4.06373940776489	3.80447073736225	3.05230038047922	3.82314490732415	1.00311599079847	0.0914961912793026	0.467800271151594
Merged-chr2-9871096-2	chr2	9870996	9871196	+	983.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355111, intron 3 of 5)	intron (NM_001355111, intron 3 of 5)	7504.0	NM_001355110	14462.0	Mm.313866	NM_008091	ENSMUSG00000015619	Gata3	Gata-3|jal	GATA binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-87126264-2	chr6	87126161	87126361	+	647.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21515.0	NM_001167937	52372.0	Mm.282851	NM_001167937	ENSMUSG00000090891	D6Ertd527e	AU043841	DNA segment, Chr 6, ERATO Doi 527, expressed	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45117732-4	chr7	45117637	45117837	+	966.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4020.0	NR_029560	387168.0		NR_029560	ENSMUSG00000065495	Mir150	Mirn150|mir-150|mmu-mir-150	microRNA 150	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-151933632-4	chr4	151933511	151933711	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172704)	promoter-TSS (NM_172704)	-109.0	NM_172704	230935.0	Mm.21353	NM_172704	ENSMUSG00000039768	Dnajc11	E030019A03Rik	DnaJ heat shock protein family (Hsp40) member C11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-57037938-2	chr17	57037838	57038038	+	562.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346527, intron 5 of 7)	B1_Mur4|SINE|Alu	3716.0	NM_001346527	103775.0	Mm.33647	NM_175333	ENSMUSG00000011486	Slc25a41	4933406J04Rik|AI507137	solute carrier family 25, member 41	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-75775399-4	chr2	75775293	75775493	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56784.0	NM_172666	228061.0	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-68092178-2	chr11	68092078	68092278	+	773.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_018768, intron 6 of 7)	intron (NM_018768, intron 6 of 7)	125720.0	NM_018768	55943.0	Mm.3973	NM_018768	ENSMUSG00000020903	Stx8	0610007H08Rik|1110002H11Rik|4930571E13Rik|CARB	syntaxin 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-63308790-3	chr10	63308692	63308892	+	886.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359484, intron 17 of 22)	intron (NM_001359484, intron 17 of 22)	30243.0	NM_019812	93759.0	Mm.351459	NM_019812	ENSMUSG00000020063	Sirt1	AA673258|SIR2L1|Sir2|Sir2a|Sir2alpha	sirtuin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-151021022-3	chr5	151020923	151021123	+	646.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	68416.0	NM_013823	16591.0	Mm.6500	NM_013823	ENSMUSG00000058488	Kl	alpha-kl	klotho	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-46391561-2	chr4	46391461	46391661	+	983.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2124.0	NM_001347095	74753.0	Mm.45973	NM_029086	ENSMUSG00000028331	Trmo	5830415F09Rik|AV014846|Nap1	tRNA methyltransferase O	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-97227728-4	chr3	97227612	97227812	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029933)	promoter-TSS (NM_029933)	-348.0	NM_029933	77578.0	Mm.226175	NM_029933	ENSMUSG00000038256	Bcl9	2610202E01Rik|8030475K17Rik|A330041G23Rik|Gm130	B cell CLL/lymphoma 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52620874-2	chr13	52620774	52620974	+	746.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001198977, exon 4 of 14)	exon (NM_001198977, exon 4 of 14)	23992.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-55416178-3	chr6	55416102	55416302	+	828.688904	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	HAL1|LINE|L1	19315.0	NR_046179	330324.0	Mm.113703	NR_046179	ENSMUSG00000108228	6430584L05Rik	6430584L05	RIKEN cDNA 6430584L05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-96790177-1	chr5	96790077	96790277	+	627.0	f1_balb.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-3208.0	NM_013470	11745.0	Mm.7214	NM_013470	ENSMUSG00000029484	Anxa3	Anx3	annexin A3	protein-coding	1.15949712670046	0.758145129818223	0.745245656306801	0.735165845798642	1.63571903996369	1.69400597716891	1.28035662121952	1.23585015668839	2.91924846718531	0.0505814663777662	0.327805059560914
Merged-chr2-158502488-1	chr2	158502388	158502588	+	739.0	f1_balb.idr	promoter-TSS (NM_145635)	promoter-TSS (NM_145635)	-124.0	NM_145635	246747.0	Mm.28800	NM_145635	ENSMUSG00000044405	Adig	SMAF-1|Smaf1	adipogenin	protein-coding	1.83943850850765	1.94765628814349	2.33157416408428	1.06534975571252	2.452913149325	1.12127971083257	1.09373965475723	2.51586387517425	0.282090658395675	0.815049338570719	0.998431161219273
Merged-chr1-120532712-4	chr1	120532594	120532794	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27670.0	NM_010766	17167.0	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-23048374-5	chr11	23048294	23048494	+	793.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35007.0	NM_028672	73873.0	Mm.252406	NM_028672	ENSMUSG00000049811	Fam161a	4930430E16Rik	family with sequence similarity 161, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-160919593-2	chr1	160919480	160919680	+	679.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001024952, intron 1 of 19)	intron (NM_001024952, intron 1 of 19)	13169.0	NM_001024952	381305.0	Mm.329667	NM_001024952	ENSMUSG00000040423	Rc3h1	5730557L09Rik|Gm551|N28103|mKIAA2025	RING CCCH (C3H) domains 1	protein-coding	2.7393934802836	2.97942150743254	2.96635720002175	2.09977557851511	2.76181671283087	2.24894824766355	1.77693765524811	2.89907548959542	-0.471372623126895	0.551021683163436	0.959171023623988
Merged-chr6-17734254-4	chr6	17734149	17734349	+	939.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289624, intron 1 of 15)	RMER1C|Other|Other	-9343.0	NM_001289627	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-81235299-3	chr7	81235202	81235402	+	924.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008803, intron 1 of 21)	intron (NM_008803, intron 1 of 21)	21498.0	NM_008803	18584.0	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-65949929-2	chr17	65949829	65950029	+	564.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023053, intron 1 of 4)	RSINE1|SINE|B4	1258.0	NM_023053	65960.0	Mm.10153	NM_023053	ENSMUSG00000024098	Twsg1	1810013J15Rik|9030422N06Rik|AW552143|D17Ertd403e|Tsg|Twg	twisted gastrulation BMP signaling modulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-176799077-2	chr1	176798977	176799177	+	737.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001099637, intron 1 of 19)	intron (NM_001099637, intron 1 of 19)	8047.0	NM_001099637	545389.0	Mm.269991	NM_001024722	ENSMUSG00000057335	Cep170	4933426L22Rik|A330004A13Rik|AI195353	centrosomal protein 170	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-154428527-2	chr3	154428423	154428623	+	763.0	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	97702.0	NR_040387	99686.0	Mm.38082	NR_040387	ENSMUSG00000093738	AI606473	-	expressed sequence AI606473	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-77775129-2	chr15	77775029	77775229	+	831.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_022410, exon 22 of 41)	exon (NM_022410, exon 22 of 41)	-18119.0	NM_001357895	239552.0	Mm.125650	NM_001081970	ENSMUSG00000056656	Apol8	9830006J20Rik|APOL-II|Apol2	apolipoprotein L 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-119895447-4	chr9	119895332	119895532	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026236, intron 1 of 18)	CpG	537.0	NM_026236	67561.0	Mm.104789	NM_026236	ENSMUSG00000032512	Wdr48	8430408H12Rik|Uaf1|mKIAA1449	WD repeat domain 48	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-61774088-1	chr13	61773988	61774188	+	564.0	f0_c57.idr	intron (NR_028430, intron 1 of 3)	intron (NR_028430, intron 1 of 3)	2508.0	NR_028430	432812.0	Mm.317358	NR_028430		BC052688	-	cDNA sequence BC052688	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-79405299-1	chr13	79405199	79405399	+	618.0	f1_balb.idr	Intergenic	Lx3A|LINE|L1	-1206426.0	NM_010151	13865.0	Mm.439653	NM_010151	ENSMUSG00000069171	Nr2f1	COUP-TF1|COUP-TFI|COUPTFA|EAR-3|EAR3|Erbal3|SVP44|Tcfcoup1	nuclear receptor subfamily 2, group F, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-75506139-2	chr18	75506037	75506237	+	715.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_201354, intron 9 of 11)	intron (NM_201354, intron 9 of 11)	-8508.0	NR_045879	100038353.0	Mm.440724	NR_045879	ENSMUSG00000097712	Gm10532	-	predicted gene 10532	ncRNA	1.84868498642618	1.80307698496566	0.94091211146919	0.927777842174049	1.78590510134539	1.38994049759747	1.16416304262753	1.69212862139022	0.207624473983551	0.87127201180961	0.998431161219273
Merged-chr1-102355572-2	chr1	102355472	102355672	+	650.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	1199804.0	NR_037989	100504525.0	Mm.87065	NR_037989	ENSMUSG00000100684	Gm20268	-	predicted gene, 20268	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-84797073-2	chr11	84796973	84797173	+	907.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22442.0	NM_145433	217038.0	Mm.280825	NM_145433	ENSMUSG00000018405	Mrm1	A530065E19Rik	mitochondrial rRNA methyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-75478202-2	chr1	75478102	75478302	+	675.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001566, intron 1 of 3)	intron (NM_001001566, intron 1 of 3)	1269.0	NM_001001566	74241.0	Mm.260577	NM_001001565	ENSMUSG00000032997	Chpf	1700028N03Rik|AI414328|D1Bwg1363e	chondroitin polymerizing factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-144553281-2	chr7	144553181	144553381	+	777.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001195086, intron 1 of 31)	intron (NM_001195086, intron 1 of 31)	448.0	NM_001033319	233977.0	Mm.490347	NM_001033319	ENSMUSG00000037519	Ppfia1	C030014K08Rik|C87158|LIP.1|LIP1	protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-5368931-4	chr5	5368808	5369008	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011074, intron 2 of 14)	intron (NM_011074, intron 2 of 14)	11343.0	NM_011074	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	2.05444460532763	1.19005574336814	2.02179542188291	2.48710075751802	2.30906499545007	1.44715160889664	1.60261237543171	1.55730797762943	-0.636225718236567	0.551749851785358	0.959312344950351
Merged-chr1-55215630-4	chr1	55215535	55215735	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028713, intron 1 of 8)	intron (NM_028713, intron 1 of 8)	11147.0	NM_001356288	74013.0	Mm.292050	NM_028713	ENSMUSG00000025978	Rftn2	2700010E02Rik|3222401M22Rik	raftlin family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-72536937-2	chr14	72536837	72537037	+	984.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	173066.0	NM_207636	319448.0	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-20695172-7	chr14	20695081	20695281	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001168273)	TTS (NM_001168273)	213.0	NM_028428	73068.0	Mm.277552	NM_028428	ENSMUSG00000039357	Fut11	3110009G03Rik|AI317183	fucosyltransferase 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-37156474-4	chr10	37156376	37156576	+	872.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17550.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-113760802-2	chr6	113760702	113760902	+	705.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001347365, exon 20 of 24)	exon (NM_001347365, exon 20 of 24)	-20121.0	NM_024206	110379.0	Mm.29296	NM_024206	ENSMUSG00000030298	Sec13	1110003H02Rik|Sec13l1|Sec13r	SEC13 homolog, nuclear pore and COPII coat complex component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-56840917-4	chr10	56840815	56841015	+	899.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	408934.0	NR_152768	102640560.0	Mm.417249	NR_152768		Gm36595	-	predicted gene, 36595	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-97919509-2	chr2	97919409	97919609	+	553.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR21|LTR|ERVK	451852.0	NM_178725	241568.0	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-84244856-2	chr15	84244651	84244851	+	788.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133167, intron 1 of 12)	intron (NM_133167, intron 1 of 12)	12708.0	NM_133167	170736.0	Mm.323892	NM_133167	ENSMUSG00000022438	Parvb	AI595373|AW742462|D15Gsk1|affixin	parvin, beta	protein-coding	-0.991597071560028	-1.11266276692436	-1.12372915630895	-1.13234486067054	-1.13506748179545	-1.11026463418018	-1.12122396832063	-0.590291635890923	1.70329920231503	0.601976331032042	1
Merged-chr6-29217508-2	chr6	29217408	29217608	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-1144.0	NM_001302934	23917.0	Mm.260707	NM_011829	ENSMUSG00000003500	Impdh1	B930086D20Rik|IMPDH-I	inosine monophosphate dehydrogenase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28014132-3	chr7	28014039	28014239	+	909.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001254951)	promoter-TSS (NM_001254951)	-24.0	NM_001254951	100043772.0	Mm.129275	NM_001100456	ENSMUSG00000096916	Zfp850	C130069I09Rik|Gm4636	zinc finger protein 850	protein-coding	1.92859249159009	1.30103270545475	2.44008364277309	1.23121263209422	1.18577274430236	1.05025255992679	1.90974819678293	2.0546718842442	-0.564682071317367	0.629146937452705	0.9810898044655
Merged-chr17-73942733-4	chr17	73942631	73942831	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011723, intron 2 of 35)	intron (NM_011723, intron 2 of 35)	7465.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70803047-4	chr11	70802939	70803139	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045526, intron 1 of 4)	MLT1D|LTR|ERVL-MaLR	9522.0	NM_001045526	327957.0	Mm.164325	NM_001045526	ENSMUSG00000057135	Scimp	A430084P05Rik	SLP adaptor and CSK interacting membrane protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-33930995-7	chr17	33930909	33931109	+	997.985718	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009059, intron 2 of 17)	intron (NM_009059, intron 2 of 17)	1115.0	NM_009059	19732.0	Mm.43777	NM_009059	ENSMUSG00000041354	Rgl2	KE1.5|Rab2l|Rgt2|Rlf	ral guanine nucleotide dissociation stimulator-like 2	protein-coding	3.71135712254034	3.34618282297699	4.06164736923777	2.77251146605672	3.94549120784492	3.47696145105734	3.91337835437144	3.66690443522137	0.307751000731286	0.563655961387546	0.960367595640396
Merged-chr13-118168507-2	chr13	118168427	118168627	+	657.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	218725.0	NM_021556	59054.0	Mm.143810	NM_021556	ENSMUSG00000021731	Mrps30	2610020A16Rik|AA968347|PAP|Pdcd9	mitochondrial ribosomal protein S30	protein-coding	-1.5061220274826	-1.47360709383584	-1.48343987814663	-1.49151681994238	-1.50383953926072	-1.47147628845725	-1.0170701920923	-1.49007105122263	2.15652851593596	0.535359572134045	1
Merged-chr2-120309413-4	chr2	120309299	120309499	+	954.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024145, intron 7 of 19)	intron (NM_001024145, intron 7 of 19)	4766.0	NM_001024145	271844.0	Mm.24880	NM_001024145	ENSMUSG00000046971	Pla2g4f	4732472I07Rik|Gm647|Pla2zeta	phospholipase A2, group IVF	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81031711-2	chr15	81031611	81031811	+	611.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001082536, intron 3 of 13)	intron (NM_001082536, intron 3 of 13)	53946.0	NM_134091	105835.0	Mm.274943	NM_134091	ENSMUSG00000042303	Sgsm3	1810012I01Rik|AI428557|BB175482|Cip85|R75178|RUSC3|Rutbc3	small G protein signaling modulator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-59353415-4	chr9	59353300	59353500	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153195, intron 1 of 15)	CpG	108.0	NM_001359558	102774.0	Mm.200714	NM_175325	ENSMUSG00000025235	Bbs4	AW537059|AW742241|D9Ertd464e	Bardet-Biedl syndrome 4 (human)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-116231405-3	chr7	116231305	116231505	+	950.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305185, intron 3 of 26)	intron (NM_001305185, intron 3 of 26)	6371.0	NM_001305186	233765.0	Mm.3741	NM_172743	ENSMUSG00000045659	Plekha7	A430081P20Rik|AI414265	pleckstrin homology domain containing, family A member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-154927327-5	chr4	154927265	154927465	+	889.400024	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178931, intron 1 of 7)	intron (NM_178931, intron 1 of 7)	712.0	NM_178931	230979.0	Mm.215147	NM_178931	ENSMUSG00000042333	Tnfrsf14	Atar|HveA|Hvem|Tnfrs14	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	protein-coding	1.58391698613268	0.858353951759078	0.836214801886381	1.79959610913428	1.48098782050567	2.56418345975506	1.30537806575279	0.821662911216395	1.09445978306976	0.411046210439982	0.894256659801134
Merged-chr13-62620944-3	chr13	62620855	62621055	+	735.9111330000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173381, intron 1 of 2)	intron (NM_173381, intron 1 of 2)	3227.0	NM_001324406	211378.0	Mm.247448	NM_173381	ENSMUSG00000072066	6720489N17Rik	9330128I06	RIKEN cDNA 6720489N17 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-23280648-4	chr16	23280568	23280768	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252505, intron 2 of 7)	L3|LINE|CR1	-9802.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-26141128-3	chr2	26141034	26141234	+	939.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001256521)	promoter-TSS (NM_001256521)	-628.0	NM_001256521	109299.0	Mm.389259	NM_001256521		Tmem250-ps	AI551216|C330006A16Rik	transmembrane protein 250, pseudogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-98799630-3	chr15	98799532	98799732	+	810.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8293.0	NM_001013741	13199.0	Mm.390810	NM_001013741	ENSMUSG00000059213	Ddn	Gm748	dendrin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-31110081-4	chr6	31109990	31110190	+	866.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110471, intron 3 of 3)	intron (NR_110471, intron 3 of 3)	-46997.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-97997123-2	chr3	97997023	97997223	+	726.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16415.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-107066331-3	chr8	107066258	107066458	+	833.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025458)	promoter-TSS (NM_025458)	-714.0	NM_025458	66269.0	Mm.23032	NM_025458	ENSMUSG00000031919	Tmed6	1810015P03Rik|1810018I24Rik	transmembrane p24 trafficking protein 6	protein-coding	0.0419994502347161	0.0653939611223827	0.26021540095867	0.0519119991065734	0.0434832497771769	0.06709151297657	0.920513247169539	0.950475108541924	3.47380796280825	0.102861211925573	1
Merged-chr2-151000954-4	chr2	151000856	151001056	+	896.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207204, intron 1 of 23)	B3|SINE|B2	8442.0	NM_207204	78177.0	Mm.120911	NM_207204	ENSMUSG00000068115	Ninl	4930519N13Rik|Gm1004|Gm1634|mKIAA0980	ninein-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-27259674-2	chr3	27259574	27259774	+	765.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTRIS_Mus|LTR|ERV1	-57403.0	NM_009425	22035.0	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141482604-2	chr7	141482504	141482704	+	585.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252588, intron 2 of 7)	intron (NM_001252588, intron 2 of 7)	6224.0	NM_001252588	64540.0	Mm.489619	NM_053082	ENSMUSG00000025511	Tspan4	AI325509|AI746565|D130042I01Rik|NAG-2|Tm4sf7|Tspan-4	tetraspanin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-96172029-3	chr5	96171931	96172131	+	809.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10041.0	NM_144910	231464.0	Mm.28374	NM_144910	ENSMUSG00000034724	Cnot6l	4932442K20Rik	CCR4-NOT transcription complex, subunit 6-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-133497979-4	chr2	133497871	133498071	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54188.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-13833986-4	chr10	13833947	13834147	+	958.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025446, intron 1 of 5)	intron (NM_025446, intron 1 of 5)	34910.0	NM_025446	66253.0	Mm.45755	NM_025446	ENSMUSG00000019806	Aig1	1500031O19Rik|AV064870|AW413422|CGI-103	androgen-induced 1	protein-coding	3.74002086745053	3.71987076165937	3.15230172515429	3.70171982754498	3.27402706072656	4.0790307883285	2.03785807338496	3.35888448556586	-0.35114207851806	0.567995666569517	0.962700130957844
Merged-chr11-94566996-2	chr11	94566896	94567096	+	614.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007689, intron 1 of 3)	intron (NM_007689, intron 1 of 3)	1949.0	NM_007689	12643.0	Mm.440523	NM_007689	ENSMUSG00000039084	Chad	SLRR4A	chondroadherin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-5369541-2	chr5	5369441	5369641	+	778.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011074, intron 2 of 14)	(CA)n|Simple_repeat|Simple_repeat	10710.0	NM_011074	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-115799766-1	chr3	115799666	115799866	+	559.0	f0_balb.idr	Intergenic	URR1A|DNA|hAT-Charlie	-84711.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27790199-4	chr17	27790082	27790282	+	946.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033279, intron 2 of 4)	intron (NM_001033279, intron 2 of 4)	30360.0	NM_001033279	224647.0	Mm.196577	NM_001033279	ENSMUSG00000056692	D17Wsu92e	AU020189|C030010A15|C80239	DNA segment, Chr 17, Wayne State University 92, expressed	protein-coding	5.09600042378854	4.39594771606499	5.34347552594547	4.61268910745653	4.42464806233507	4.7226811804414	5.40685013723068	4.84291470868819	-0.0297610968751972	0.935903240948981	0.998431161219273
Merged-chr2-167757598-2	chr2	167757498	167757698	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	66421.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-56335558-3	chr13	56335437	56335637	+	777.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27363.0	NR_046061	100038494.0	Mm.370447	NR_046061	ENSMUSG00000074885	Gm10782	-	predicted gene 10782	ncRNA	0.645199983981203	0.158013001063695	0.150841539881964	0.145275403050608	0.656048776098004	0.15962310950133	0.152427346552426	1.08295302855199	1.73871895448353	0.407198410657761	1
Merged-chr6-124661765-2	chr6	124661665	124661865	+	663.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-1339.0	NR_149320	14792.0	Mm.273915	NM_145130	ENSMUSG00000004270	Lpcat3	C3f|Grcc3f|Lpcat|Lpeat|Lplat5|Lpsat|Mboat5|Moact5|Oact5|PTG	lysophosphatidylcholine acyltransferase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-91260150-3	chr15	91260047	91260247	+	759.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR78|LTR|ERV1	-68140.0	NM_001358967	26874.0	Mm.295456	NM_011994	ENSMUSG00000055782	Abcd2	ABC39|ALDL1|ALDR|ALDRP	ATP-binding cassette, sub-family D (ALD), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-111052379-4	chr8	111052265	111052465	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146217, intron 15 of 20)	intron (NM_146217, intron 15 of 20)	-3974.0	NM_028274	72544.0	Mm.24174	NM_028274	ENSMUSG00000109941	Exosc6	2610510N21Rik|C76919|Mtr3	exosome component 6	protein-coding	-0.207323666853782	-0.534437913937729	-0.537386224721263	-0.392636704338304	-0.199664614732598	-0.53377000809425	-0.536738019060364	-0.390156452187101	0.0381901882985646	0.987854390359289	1
Merged-chr8-123368281-1	chr8	123368181	123368381	+	578.0	f1_balb.idr	intron (NM_172287, intron 13 of 14)	B2_Mm2|SINE|B2	-5430.0	NM_001359076	66855.0	Mm.178818	NM_025804	ENSMUSG00000001472	Tcf25	1100001J13Rik|1810041K11Rik|D8Ertd325e|Nulp1|mKIAA1049	transcription factor 25 (basic helix-loop-helix)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-53376597-3	chr6	53376491	53376691	+	786.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001327821, intron 3 of 10)	intron (NM_001327821, intron 3 of 10)	89288.0	NM_001327821	231991.0	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-75551152-4	chr7	75551059	75551259	+	946.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 2 of 36)	intron (NM_029332, intron 2 of 36)	95625.0	NM_029332	75547.0	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-93474506-2	chr1	93474406	93474606	+	642.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133808, intron 1 of 27)	intron (NM_133808, intron 1 of 27)	3871.0	NM_001357556	110611.0	Mm.30012	NM_133808	ENSMUSG00000034088	Hdlbp	1110005P14Rik|AA960365|AI118566|D1Ertd101e	high density lipoprotein (HDL) binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-57720926-2	chr10	57720826	57721026	+	693.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008863, intron 4 of 5)	L1_Mus4|LINE|L1	-63997.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-43520324-2	chr1	43520224	43520424	+	553.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010879, intron 2 of 4)	ORR1C2|LTR|ERVL-MaLR	74573.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141159597-7	chr4	141159479	141159679	+	896.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172518, intron 1 of 9)	intron (NM_172518, intron 1 of 9)	11657.0	NM_172518	213499.0	Mm.28865	NM_172518	ENSMUSG00000028920	Fbxo42	6720460I06Rik|mKIAA1332	F-box protein 42	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-50565342-4	chr9	50565248	50565448	+	898.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008360, intron 2 of 7)	intron (NM_008360, intron 2 of 7)	-4080.0	NM_025687	66654.0	Mm.442255	NM_025687	ENSMUSG00000032065	Tex12	5730518K06Rik	testis expressed gene 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-4789116-10	chr7	4789071	4789271	+	897.6166380000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029384, exon 1 of 2)	exon (NM_029384, exon 1 of 2)	389.0	NM_029384	664968.0	Mm.292837	NM_029384	ENSMUSG00000030431	Tmem238	2210411K11Rik	transmembrane protein 238	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-25509845-2	chr9	25509745	25509945	+	884.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 2 of 7)	RMER17B|LTR|ERVK	28248.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-72608487-4	chr11	72608390	72608590	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025985, intron 1 of 5)	CpG	1229.0	NM_025985	67128.0	Mm.458052	NM_025985	ENSMUSG00000020794	Ube2g1	2700059C12Rik|AI256795|AU014992|AW552068|D130023C12Rik	ubiquitin-conjugating enzyme E2G 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-73429303-2	chr2	73429203	73429403	+	727.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_153138)	TTS (NM_153138)	24586.0	NM_001289722	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-134303810-3	chr1	134303716	134303916	+	810.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001144855, intron 24 of 28)	intron (NM_001144855, intron 24 of 28)	13812.0	NM_031189	17928.0	Mm.16528	NM_031189	ENSMUSG00000026459	Myog	MYF4|bHLHc3|myo	myogenin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-61457037-3	chr11	61456942	61457142	+	674.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-3050.0	NM_001291024	22671.0	Mm.89201	NM_009548	ENSMUSG00000010086	Rnf112	ZNF179|Zfp179|bfp|neurolastin	ring finger protein 112	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-11637236-3	chr1	11637132	11637332	+	823.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160369, intron 7 of 13)	intron (NM_001160369, intron 7 of 13)	223127.0	NM_001160371	320492.0	Mm.52021	NM_177173	ENSMUSG00000057715	A830018L16Rik	-	RIKEN cDNA A830018L16 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-99666794-4	chr6	99666690	99666890	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025829)	promoter-TSS (NM_025829)	-19.0	NM_025829	66892.0	Mm.32889	NM_025829	ENSMUSG00000093661	Eif4e3	1300018P11Rik|AI451927|eIF4E-3	eukaryotic translation initiation factor 4E member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116648698-3	chr11	116648573	116648773	+	806.805542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030206, intron 3 of 3)	intron (NM_030206, intron 3 of 3)	5640.0	NM_030206	114886.0	Mm.34598	NM_030206	ENSMUSG00000020810	Cygb	3110001K20Rik|HGb|Staap	cytoglobin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-150838012-5	chr2	150837827	150838027	+	842.956665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356549, intron 10 of 13)	intron (NM_001356549, intron 10 of 13)	4643.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-54960208-2	chr12	54960108	54960308	+	585.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013815, intron 3 of 26)	intron (NM_013815, intron 3 of 26)	26128.0	NM_013815	217578.0	Mm.479583	NM_013815	ENSMUSG00000035021	Baz1a	Acf1|B930060C03|BC065123|Gtl5|Wcrf180|cbp146	bromodomain adjacent to zinc finger domain 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-144907481-3	chr4	144907385	144907585	+	644.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357274, intron 2 of 6)	intron (NM_001357274, intron 2 of 6)	14348.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-30070880-2	chr17	30070780	30070980	+	764.799988	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356265, intron 2 of 5)	intron (NM_001356265, intron 2 of 5)	65841.0	NM_001356265	21769.0	Mm.220972	NM_148926	ENSMUSG00000044477	Zfand3	AW539211|TEG-27|Tex27	zinc finger, AN1-type domain 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-142622525-2	chr3	142622425	142622625	+	803.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_010260, intron 1 of 10)	L1M2|LINE|L1	1421.0	NR_105802	102465200.0		NR_105802	ENSMUSG00000098871	Mir6381	Gm27963|mmu-mir-6381	microRNA 6381	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-108985072-4	chr8	108984960	108985160	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48200.0	NR_037295	100526511.0		NR_037295	ENSMUSG00000093241	Mir3108	mir-3108|mmu-mir-3108	microRNA 3108	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3737164-3	chr4	3737074	3737274	+	898.2000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 1 of 12)	intron (NM_001111096, intron 1 of 12)	22210.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-70939666-2	chr12	70939566	70939766	+	788.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019785, intron 1 of 12)	intron (NM_019785, intron 1 of 12)	1809.0	NM_019785	56444.0	Mm.29317	NM_019785	ENSMUSG00000021076	Actr10	Actr11|Arp11	ARP10 actin-related protein 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135876084-4	chr4	135875977	135876177	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	-2231.0	NM_026383	52830.0	Mm.29159	NM_026383	ENSMUSG00000028675	Pnrc2	0610011E17Rik|D4Bwg0593e	proline-rich nuclear receptor coactivator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-61380862-2	chr9	61380762	61380962	+	581.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083928, intron 4 of 19)	intron (NM_001083928, intron 4 of 19)	8496.0	NM_001083927	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-55539501-2	chr9	55539401	55539601	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-1648.0	NM_027397	104360.0	Mm.273996	NM_027397	ENSMUSG00000032318	Isl2	3110001N10Rik	insulin related protein 2 (islet 2)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115514463-4	chr11	115514368	115514568	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008258)	promoter-TSS (NM_008258)	-75.0	NM_008258	15374.0	Mm.1775	NM_008258	ENSMUSG00000020737	Jpt1	Hn1	Jupiter microtubule associated homolog 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-73567202-4	chr2	73567103	73567303	+	970.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007389, intron 7 of 8)	intron (NM_007389, intron 7 of 8)	13135.0	NM_007389	11435.0	Mm.4583	NM_007389	ENSMUSG00000027107	Chrna1	AI385656|AI608266|Achr-1|Acra	cholinergic receptor, nicotinic, alpha polypeptide 1 (muscle)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-26752799-2	chr10	26752699	26752899	+	617.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19713.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45715343-4	chr7	45715236	45715436	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020011)	promoter-TSS (NM_020011)	-129.0	NM_020011	56632.0	Mm.24222	NM_020011	ENSMUSG00000057342	Sphk2	C76851	sphingosine kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-137869607-4	chr3	137869498	137869698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033155, intron 1 of 7)	L1MB2|LINE|L1	1923.0	NM_001033155	70604.0	Mm.256488	NM_001033155	ENSMUSG00000074212	Dnajb14	5730496F10Rik	DnaJ heat shock protein family (Hsp40) member B14	protein-coding	1.38109831027421	1.84482133573384	1.9863541031896	0.897957734409963	0.874577455621811	1.8604529153403	2.00426641320555	0.900785872213433	-0.209713216603422	0.875508469331671	0.998431161219273
Merged-chr10-20855193-3	chr10	20855049	20855249	+	921.7333369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-97398.0	NM_026203	52906.0	Mm.253280	NM_026203	ENSMUSG00000019986	Ahi1	1700015F03Rik|Ahi-1|D10Bwg0629e	Abelson helper integration site 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-130424830-4	chr2	130424726	130424926	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001114541)	promoter-TSS (NM_001114541)	-185.0	NM_001114541	319513.0	Mm.482539	NM_178762	ENSMUSG00000037773	Pced1a	A930025D01Rik|AI480484|Fam113a	PC-esterase domain containing 1A	protein-coding	2.8445860679793	1.79563043990802	3.00369494332021	2.07253152408575	2.55893670509797	2.2175120710179	2.6702046001061	2.77606189550036	0.0687400135748582	0.932088764756219	0.998431161219273
Merged-chr17-23786120-4	chr17	23785881	23786081	+	944.966675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029798)	promoter-TSS (NM_029798)	100.0	NM_029798	76917.0	Mm.269613	NM_029798	ENSMUSG00000023911	Flywch2	2810417J12Rik|3010014L17Rik|AW548203	FLYWCH family member 2	protein-coding	0.949021554259611	1.80518340988244	0.794209083957829	0.780966028972864	1.58739764414531	0.814700578193588	1.51678697571216	1.94635727089184	1.23808165382791	0.381496878518636	0.872879327710422
Merged-chr5-145662193-2	chr5	145662097	145662297	+	775.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F|LINE|L1	57939.0	NM_017396	53973.0	Mm.379071	NM_017396	ENSMUSG00000075551	Cyp3a41a	Cyp3a41	cytochrome P450, family 3, subfamily a, polypeptide 41A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-23144394-2	chr19	23144294	23144494	+	839.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010638, intron 1 of 1)	intron (NM_010638, intron 1 of 1)	3168.0	NM_010638	16601.0	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|Gm9971	Kruppel-like factor 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-84960154-2	chr17	84960054	84960254	+	644.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011151, intron 1 of 5)	B1F1|SINE|Alu	2153.0	NM_001159496	19043.0	Mm.249695	NM_011151	ENSMUSG00000061130	Ppm1b	PP2CB	protein phosphatase 1B, magnesium dependent, beta isoform	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-80008995-4	chr17	80008879	80009079	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53289.0	NR_152119	72692.0	Mm.64579	NM_144802	ENSMUSG00000024095	Hnrnpll	2510028H02Rik|2810036L13Rik|AI256697|AI852082|Hnrpll	heterogeneous nuclear ribonucleoprotein L-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-83158686-2	chr15	83158586	83158786	+	902.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029787, intron 8 of 8)	MIRb|SINE|MIR	9041.0	NR_004432	104307.0	Mm.471434	NR_004432	ENSMUSG00000065176	Rnu12	-	RNA U12, small nuclear	snRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100966928-2	chr7	100966828	100967028	+	771.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2562.0	NM_183168	233571.0	Mm.235193	NM_183168	ENSMUSG00000048779	P2ry6	2010204J23Rik|P2Y6	pyrimidinergic receptor P2Y, G-protein coupled, 6	protein-coding	-1.56355737717652	-1.81244775989375	-1.82128546162293	-1.82854501295842	-1.83962066705452	-1.81053259306168	-1.81928479966835	-1.82724555674025	-1.28500227969968	0.715751224811686	1
Merged-chr5-101950351-2	chr5	101950251	101950451	+	608.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 9 of 66)	intron (NM_172882, intron 9 of 66)	119570.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46152489-4	chr8	46152384	46152584	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11167.0	NM_025747	66756.0	Mm.133623	NM_025747	ENSMUSG00000031631	Cfap97	1110068E21Rik|4933411K20Rik|AW049273|Kiaa1430	cilia and flagella associated protein 97	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-43675375-1	chr19	43675275	43675475	+	1000.0	f0_c57.idr	promoter-TSS (NM_145156)	promoter-TSS (NM_145156)	197.0	NR_045645	100502982.0	Mm.313570	NR_045645		BC037704	-	cDNA sequence BC037704	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-61021096-2	chr9	61020973	61021173	+	914.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M5|LINE|L1	4004.0	NR_040767	330956.0	Mm.207985	NR_040767	ENSMUSG00000111290	Gm5122	A430102L10	predicted gene 5122	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98959664-4	chr11	98959574	98959774	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001176528)	promoter-TSS (NM_001176528)	-797.0	NM_001176528	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191352921-2	chr1	191352821	191353021	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_025864)	TTS (NM_025864)	26956.0	NM_025864	66950.0	Mm.236300	NM_025864	ENSMUSG00000026627	Tmem206	2310028N02Rik|AI118576	transmembrane protein 206	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-120783185-2	chr6	120783085	120783285	+	899.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081048, intron 1 of 9)	intron (NM_001081048, intron 1 of 9)	9417.0	NM_001081048	71803.0	Mm.425340	NM_001081048	ENSMUSG00000004902	Slc25a18	1500015I14Rik|AW125787	solute carrier family 25 (mitochondrial carrier), member 18	protein-coding	0.0525023318185613	0.794667008366262	0.393078977293099	0.225959011726845	0.539007893956609	0.0715433466168703	0.0657147243113329	0.0607362335125405	-1.37712853475184	0.506868279308049	1
Merged-chr10-111477279-2	chr10	111477179	111477379	+	701.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_152558, intron 1 of 14)	intron (NR_152558, intron 1 of 14)	4052.0	NR_152558	53605.0	Mm.290407	NM_015781	ENSMUSG00000058799	Nap1l1	AA407126|AI256722|D10Ertd68e|NAP-1	nucleosome assembly protein 1-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81384308-4	chr10	81384213	81384413	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133964)	promoter-TSS (NM_133964)	-115.0	NM_133964	102115.0	Mm.294975	NM_133964	ENSMUSG00000078440	Dohh	1110033C18Rik|AI585913|AL022869|Hlrc1	deoxyhypusine hydroxylase/monooxygenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-121506659-4	chr2	121506548	121506748	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030234)	promoter-TSS (NM_030234)	8.0	NM_026220	67532.0	Mm.440764	NM_026220	ENSMUSG00000068479	Mfap1a	4432409M24Rik|Mfap1	microfibrillar-associated protein 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-34036511-4	chr11	34036399	34036599	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155520, intron 4 of 4)	intron (NR_155520, intron 4 of 4)	-10429.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-58876352-4	chr15	58876224	58876424	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_026642, exon 1 of 1)	3' UTR (NM_026642, exon 1 of 1)	3675.0	NM_026642	68260.0	Mm.278805	NM_026642	ENSMUSG00000037085	Trmt12	4632406N01Rik|AI449275|Tyw2	tRNA methyltranferase 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-152111214-3	chr3	152111112	152111312	+	751.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016867, intron 3 of 5)	intron (NM_016867, intron 3 of 5)	54688.0	NM_016867	54120.0	Mm.97	NM_016867	ENSMUSG00000039131	Gipc2	2200002N01Rik|AU021850|Semcap2	GIPC PDZ domain containing family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-51689723-4	chr15	51689625	51689825	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	175736.0	NM_080635	68135.0	Mm.289800	NM_080635	ENSMUSG00000022312	Eif3h	1110008A16Rik|40kD|9430017H16Rik|EIF3-P40|EIF3-gamma|Eif3s3	eukaryotic translation initiation factor 3, subunit H	protein-coding	4.86813556672021	5.65298777973184	3.98140444767219	5.60758648510981	4.61809866790168	5.6601443282381	5.44762397213412	4.66312188701663	-0.00946592322303587	0.981291119442652	0.998431161219273
Merged-chr6-16360182-1	chr6	16360082	16360282	+	867.0	f0_c57.idr	Intergenic	IAPLTR2_Mm|LTR|ERVK	538259.0	NM_031198	21426.0	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-8918741-1	chr4	8918641	8918841	+	693.0	f1_balb.idr	Intergenic	Intergenic	167417.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0.797194019789421	0.411098801585814	1.01875134138434	0.395278305143585	0.806751874522136	0.413093341791813	0.404170562473069	1.34585106628048	0.635970677633834	0.722940999609962	1
Merged-chr18-9708710-3	chr18	9708607	9708807	+	945.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130449, intron 1 of 9)	intron (NM_130449, intron 1 of 9)	1059.0	NM_130449	140792.0	Mm.218571	NM_130449	ENSMUSG00000036103	Colec12	CL-P1|SRCL|Scara4	collectin sub-family member 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-82984676-3	chr8	82984578	82984778	+	914.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177378, intron 1 of 6)	ORR1F|LTR|ERVL-MaLR	121322.0	NM_177378	330812.0	Mm.491438	NM_177378	ENSMUSG00000047747	Rnf150	A630007N06Rik|C030044C12Rik|Greul5|mKIAA1214	ring finger protein 150	protein-coding	2.48512369835807	1.99696975971081	1.31379955112641	2.25982276106585	1.80193716695667	2.63534064803278	1.9463885551363	2.55360283142425	0.457723550344616	0.629762880612777	0.981201918729827
Merged-chr4-154162941-2	chr4	154162841	154163041	+	567.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2257.0	NM_026388	67808.0	Mm.288737	NM_026388	ENSMUSG00000029030	Tprgl	1200015A19Rik|Svap30|Tprg1l|mover	transformation related protein 63 regulated like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95988288-3	chr3	95988225	95988425	+	980.755554	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_023320)	TTS (NM_023320)	2815.0	NR_045872	668224.0	Mm.357766	NR_045872		Gm9054	EG668224	predicted gene 9054	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180396777-2	chr1	180396677	180396877	+	713.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081175, intron 2 of 7)	B3|SINE|B2	-66228.0	NR_003623	277333.0	Mm.389223	NM_199472		Gm5069	EG277333	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52589248-4	chr13	52589145	52589345	+	996.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198977, intron 1 of 13)	intron (NM_001198977, intron 1 of 13)	5808.0	NM_001198977	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-43388087-4	chr11	43388000	43388200	+	932.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13639.0	NR_029558	387164.0		NR_029558	ENSMUSG00000065601	Mir146	Mirn146|miR-146a|mmu-mir-146	microRNA 146	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-40256941-4	chr10	40256838	40257038	+	850.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359493, intron 2 of 5)	intron (NM_001359493, intron 2 of 5)	624.0	NM_001359493	67371.0	Mm.64104	NM_026113	ENSMUSG00000019837	Gtf3c6	2410016F19Rik|AU019813	general transcription factor IIIC, polypeptide 6, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-49065735-4	chr14	49065633	49065833	+	952.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144535)	promoter-TSS (NM_144535)	-816.0	NM_001360070	74385.0	Mm.379235	NM_144535	ENSMUSG00000036291	Ap5m1	4932432K03Rik|Mu5|Mudeng	adaptor-related protein complex 5, mu 1 subunit	protein-coding	3.4536526095092	3.14801189066086	2.68558922823429	3.22532322294382	2.35295810266197	3.06013643492363	2.95789795062607	3.80588648574532	-0.0105307876835936	0.987184190624955	0.998431161219273
Merged-chr1-120035479-2	chr1	120035379	120035579	+	845.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001012322, intron 4 of 13)	intron (NM_001012322, intron 4 of 13)	28499.0	NM_001012322	319229.0	Mm.189223	NM_001012322	ENSMUSG00000026387	Sctr	6530402O03Rik	secretin receptor	protein-coding	0.808949889311084	1.19243786855918	1.01465843329053	1.22067017346088	0.81391985398247	0.691405878793835	1.15676658287972	1.2280495960049	-0.351699926839547	0.80190033168214	0.998431161219273
Merged-chr3-76001377-3	chr3	76001271	76001471	+	962.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-44422.0	NM_001291069	73124.0	Mm.249232	NM_175193	ENSMUSG00000034109	Golim4	3110027H23Rik|GIMPC|GPP130|Golph4|P138	golgi integral membrane protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-61983415-4	chr9	61983319	61983519	+	918.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028748, intron 2 of 7)	ORR1E|LTR|ERVL-MaLR	-36620.0	NM_024245	71819.0	Mm.259374	NM_024245	ENSMUSG00000032254	Kif23	3110001D19Rik|C87313|CHO1|Knsl5|MKLP-1|MKLP1	kinesin family member 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-108343960-4	chr11	108343885	108344085	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011101)	promoter-TSS (NM_011101)	-97.0	NM_011101	18750.0	Mm.222178	NM_011101	ENSMUSG00000050965	Prkca	AI875142|Pkca	protein kinase C, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-5403591-2	chr2	5403491	5403691	+	553.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_030601, intron 1 of 1)	intron (NR_030601, intron 1 of 1)	24201.0	NR_030601	100124465.0		NR_030601	ENSMUSG00000078031	Mir466d	Mirn466d	microRNA 466d	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-115427592-4	chr8	115427502	115427702	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	279292.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-128129441-4	chr7	128129344	128129544	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021334)	promoter-TSS (NM_021334)	-124.0	NM_021334	16411.0	Mm.22378	NM_021334	ENSMUSG00000030789	Itgax	AI449405|Cd11c|Cr4|N418	integrin alpha X	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53083237-2	chr4	53083137	53083337	+	607.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 15 of 49)	intron (NM_013454, intron 15 of 49)	71357.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-21030991-2	chr19	21030910	21031110	+	557.416626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73700.0	NR_126458	75354.0	Mm.243873	NR_126458		4930554I06Rik	-	RIKEN cDNA 4930554I06 gene	ncRNA	-2.05752322593321	-2.15521190974092	-2.16307242109104	-2.16952927915413	-2.17938029103484	-2.15350850414045	-2.16129297361887	-2.16837350464794	-0.683654500252594	0.846597994014493	1
Merged-chr17-56251650-4	chr17	56251556	56251756	+	890.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5137.0	NM_010192	14154.0	Mm.290813	NM_010192	ENSMUSG00000043683	Fem1a	AW611390|Fem1aa	feminization 1 homolog a (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-45020551-2	chr10	45020451	45020651	+	799.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46663.0	NM_011156	19072.0	Mm.10281	NM_011156	ENSMUSG00000019849	Prep	AI047692|AI450383|D10Wsu136e|PEP|Pop	prolyl endopeptidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-34385158-2	chr6	34385058	34385258	+	836.833313	f1_balb.idr|f1_c57bl6.idr	intron (NR_149754, intron 1 of 9)	intron (NR_149754, intron 1 of 9)	911.0	NR_149754	67861.0	Mm.70371	NM_172398	ENSMUSG00000061758	Akr1b10	2310005E10Rik|Akr1b16	aldo-keto reductase family 1, member B10 (aldose reductase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56585338-4	chr17	56585220	56585420	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355463)	promoter-TSS (NM_001355463)	338.0	NM_001163300	224903.0	Mm.255066	NM_001163300	ENSMUSG00000071054	Safb	3110021E02Rik|5330423C17Rik|AU018122|D18386|E130307D12|HAP|HET|SAF-B1|SAFB1	scaffold attachment factor B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-134509854-2	chr5	134509754	134509954	+	911.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009990, intron 8 of 16)	intron (NM_009990, intron 8 of 16)	42580.0	NM_001039162	269713.0	Mm.255138	NM_009990	ENSMUSG00000063146	Clip2	B230327O20|CLIP-115|Clip1|Cyln2|WSCR4|mKIAA0291|wbscr4	CAP-GLY domain containing linker protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-69680828-3	chr18	69680729	69680929	+	881.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 17 of 19)	intron (NM_001361128, intron 17 of 19)	-244730.0	NM_201362	381175.0	Mm.266831	NM_201362	ENSMUSG00000038903	Ccdc68	BC046343	coiled-coil domain containing 68	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-27927732-2	chr15	27927632	27927832	+	553.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081302, intron 1 of 56)	intron (NM_001081302, intron 1 of 56)	98116.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-54630323-5	chr11	54630205	54630405	+	922.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252494, intron 11 of 28)	(TG)n|Simple_repeat|Simple_repeat	34159.0	NM_001252497	192786.0	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-3168544-2	chr11	3168433	3168633	+	970.75	f0_balb.idr|f1_balb.idr	intron (NM_030207, intron 7 of 32)	(TG)n|Simple_repeat|Simple_repeat	24930.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120367814-2	chr8	120367714	120367914	+	730.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-121052.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-80371378-3	chr18	80371281	80371481	+	889.377808	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7127.0	NM_001190373	240444.0	Mm.279568	NM_001190373	ENSMUSG00000059852	Kcng2	AA591524	potassium voltage-gated channel, subfamily G, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-75774727-4	chr7	75774625	75774825	+	893.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	-73613.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-112925725-2	chr10	112925625	112925825	+	660.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001033474, exon 1 of 1)	3' UTR (NM_001033474, exon 1 of 1)	3301.0	NM_001033474	382423.0	Mm.431239	NM_001033474	ENSMUSG00000074748	Atxn7l3b	4921506J03Rik|6230409E21Rik|AI315132	ataxin 7-like 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153174493-4	chr2	153174414	153174614	+	954.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133847, intron 1 of 17)	L1ME1|LINE|L1	13213.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-94721287-1	chr16	94721187	94721387	+	540.0	f1_c57bl6.idr	Intergenic	Intergenic	109868.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-140941870-4	chr7	140941759	140941959	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153832, intron 1 of 11)	intron (NR_153832, intron 1 of 11)	468.0	NM_145387	212974.0	Mm.260139	NM_145387	ENSMUSG00000062031	Pgghg	5730511L01Rik|Athl1|BC023151	protein glucosylgalactosylhydroxylysine glucosidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-84594603-4	chr7	84594525	84594725	+	886.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010176, intron 9 of 13)	intron (NM_010176, intron 9 of 13)	11317.0	NM_010176	14085.0	Mm.3798	NM_010176	ENSMUSG00000030630	Fah	swst	fumarylacetoacetate hydrolase	protein-coding	0.60789358545587	1.64164596574665	1.14291644787889	1.22306243018616	1.04758420774227	0.86701560107325	0.634174122695655	0.814921087832496	-1.66988417534309	0.26130184147892	0.762408459680314
Merged-chr7-97328761-2	chr7	97328661	97328861	+	618.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2797.0	NM_001177412	244144.0	Mm.297541	NM_001177412	ENSMUSG00000035713	Usp35	Gm1088|Gm493	ubiquitin specific peptidase 35	protein-coding	0.537277584789875	0.0790593167984682	0.0732277108544363	0.0687233875935827	0.718838415111857	0.0803729098719171	0.656160391487136	0.0695106243809211	1.48759011425003	0.499154209225132	1
Merged-chr1-38902794-3	chr1	38902692	38902892	+	782.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-4632.0	NM_145142	98388.0	Mm.260054	NM_145142	ENSMUSG00000026080	Chst10	AI507003|AU041319|Hnk-1st|ST	carbohydrate sulfotransferase 10	protein-coding	2.24425481809809	2.6454180226392	1.48376750520019	2.48449326950251	3.07554936912745	2.78013377430995	2.57643278261012	2.87930246564002	1.15289079704622	0.14684470905561	0.596984662183454
Merged-chr11-117199715-4	chr11	117199612	117199812	+	863.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113486)	promoter-TSS (NM_001113486)	51.0	NM_001113486	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34615504-2	chr17	34615404	34615604	+	613.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_152922, intron 1 of 8)	intron (NM_152922, intron 1 of 8)	467.0	NM_152922	81701.0	Mm.231343	NM_152922	ENSMUSG00000015467	Egfl8	Ng3	EGF-like domain 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34849765-2	chr17	34849669	34849869	+	776.5	f0_c57.idr|f1_balb.idr	promoter-TSS (NM_001045864)	promoter-TSS (NM_001045864)	435.0	NM_021337	108077.0	Mm.18845	NM_021337	ENSMUSG00000040356	Skiv2l	4930534J06Rik|AW214248|Ddx13|SKI|Ski2w	superkiller viralicidic activity 2-like (S. cerevisiae)	protein-coding	-0.266434898466443	0.530409884290047	0.471713526731645	-0.259132751769394	-0.265344550773981	-0.247871965316711	-0.25351999793508	-0.258368025919988	-3.90518623708047	0.112439377254017	1
Merged-chr5-73490901-4	chr5	73490808	73491008	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001190733)	promoter-TSS (NM_001190733)	-118.0	NM_001190733	100737.0	Mm.220312	NM_178896	ENSMUSG00000051674	Dcun1d4	AI836376	DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69043020-2	chr11	69042920	69043120	+	739.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2617.0	NM_011496	20877.0	Mm.3488	NM_011496	ENSMUSG00000020897	Aurkb	AIM-1|AIRK2|AL022959|Aik2|Aim1|Ark2|AurB|IPL1|STK-1|Stk12|Stk5	aurora kinase B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5293883-4	chr17	5293786	5293986	+	910.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 8 of 19)	intron (NM_001085355, intron 8 of 19)	124881.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81564078-3	chr15	81563967	81564167	+	893.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22147.0	NM_177821	328572.0	Mm.258397	NM_177821	ENSMUSG00000055024	Ep300	A430090G16|A730011L11|KAT3B|p300|p300 HAT	E1A binding protein p300	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-64108839-2	chr1	64108739	64108939	+	630.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_033563, intron 1 of 3)	intron (NM_033563, intron 1 of 3)	12550.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-46120332-4	chr11	46120248	46120448	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291891, intron 8 of 22)	intron (NM_001291891, intron 8 of 22)	-7556.0	NM_001311209	11492.0	Mm.89940	NM_009616	ENSMUSG00000011256	Adam19	AL024287|MADDAM|MTLNB|Mltnb	a disintegrin and metallopeptidase domain 19 (meltrin beta)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-51634276-2	chr11	51634176	51634376	+	724.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025346, intron 1 of 9)	intron (NM_025346, intron 1 of 9)	1620.0	NM_025346	66089.0	Mm.288183	NM_025346	ENSMUSG00000001054	Rmnd5b	0610039K22Rik|Gid2	required for meiotic nuclear division 5 homolog B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-137471158-6	chr6	137471025	137471225	+	840.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48770.0	NM_001271589	13860.0	Mm.235346	NM_007945	ENSMUSG00000015766	Eps8	AW261790	epidermal growth factor receptor pathway substrate 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-105957631-4	chr10	105957546	105957746	+	859.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	116167.0	NM_025602	52713.0	Mm.339224	NM_025602	ENSMUSG00000019897	Ccdc59	2300004H16Rik|D10Ertd718e	coiled-coil domain containing 59	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-79930245-2	chr10	79930145	79930345	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001288625, intron 1 of 8)	intron (NM_001288625, intron 1 of 8)	2904.0	NM_001288625	13496.0	Mm.301282	NM_007880	ENSMUSG00000019564	Arid3a	Bright|Dri1|Dril1	AT rich interactive domain 3A (BRIGHT-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46851224-2	chr8	46851124	46851324	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	111479.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44825666-2	chr7	44825617	44825817	+	773.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001171024, intron 1 of 8)	intron (NM_001171024, intron 1 of 8)	-9059.0	NR_033136	107503.0	Mm.389890	NM_030693	ENSMUSG00000038539	Atf5	AFTA|Atf7|Atfx|ODA-10	activating transcription factor 5	protein-coding	-0.920746059108256	-0.900210136228289	-0.910868657888965	-0.914546390428102	-0.919816208124075	0.187426340199569	-0.909824961773136	-0.913900867410677	3.55267203040657	0.234146038776258	1
Merged-chr18-70474747-2	chr18	70474581	70474781	+	825.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289650, intron 3 of 8)	MIRc|SINE|MIR	2015.0	NM_001289650	170461.0	Mm.83623	NM_029019	ENSMUSG00000079608	Stard6	1700011K09Rik|4833424I06Rik|4933429L05Rik|AI644424	StAR-related lipid transfer (START) domain containing 6	protein-coding	0.634981648847882	1.81812152945809	0.652951186758597	0.646186482505985	0.63664633562759	1.32322301639992	0.654886958631318	1.41636538479179	-0.290496981222021	0.929444284063854	0.998431161219273
Merged-chr10-81185113-4	chr10	81185012	81185212	+	914.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001190473, intron 2 of 8)	intron (NM_001190473, intron 2 of 8)	1194.0	NM_007828	13144.0	Mm.10294	NM_007828	ENSMUSG00000034974	Dapk3	ZIPK|dlk	death-associated protein kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-23815339-3	chr10	23815236	23815436	+	758.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183116, intron 6 of 13)	intron (NM_183116, intron 6 of 13)	18350.0	NM_001358812	76306.0	Mm.294271	NM_183116	ENSMUSG00000037455	Slc18b1	1110021L09Rik	solute carrier family 18, subfamily B, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-135603110-2	chr7	135603010	135603210	+	855.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001316680, intron 2 of 20)	intron (NM_001316680, intron 2 of 20)	-2718.0	NM_001316679	19267.0	Mm.945	NM_011212	ENSMUSG00000041836	Ptpre	PTPe|PTPepsilon|RPTPepsilon	protein tyrosine phosphatase, receptor type, E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-76398197-2	chr11	76398097	76398297	+	657.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008750, intron 1 of 7)	intron (NM_008750, intron 1 of 7)	944.0	NM_008750	18230.0	Mm.27915	NM_008750	ENSMUSG00000020844	Nxn	l11Jus13	nucleoredoxin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-8470768-4	chr16	8470675	8470875	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146247)	promoter-TSS (NM_146247)	-38.0	NM_146247	239706.0	Mm.214953	NM_146247	ENSMUSG00000039345	Mettl22	-	methyltransferase like 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-28269896-4	chr5	28269801	28270001	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-24113.0	NM_001310512	269637.0	Mm.68286	NM_175651	ENSMUSG00000044681	Cnpy1	1500012D20Rik|9630008K15Rik|AI853839	canopy FGF signaling regulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-51398881-4	chr13	51398758	51398958	+	981.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MD2|LINE|L1	-9760.0	NM_010101	13610.0	Mm.136736	NM_010101	ENSMUSG00000067586	S1pr3	AI132464|Edg3|Lpb3|S1p3	sphingosine-1-phosphate receptor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-20475029-3	chr10	20474929	20475129	+	608.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347366, intron 2 of 11)	intron (NM_001347366, intron 2 of 11)	73299.0	NM_001347366	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-83092871-1	chr8	83092771	83092971	+	563.0	f1_balb.idr	Intergenic	Intergenic	-72481.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	1.00839791736926	2.43977031605208	2.02042092549563	1.04985138701727	2.71084560669744	1.10942261280995	2.26983699236495	1.8365049506905	0.777491451977339	0.518479514591857	0.947641799425091
Merged-chr8-36821223-1	chr8	36821123	36821323	+	591.0	f1_c57bl6.idr	intron (NM_001194940, intron 4 of 17)	intron (NM_001194940, intron 4 of 17)	-88169.0	NM_001194941	50768.0	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	0.745543064339988	0.803169871247967	2.03109795006762	1.5874122046471	1.93271908182657	0.807213166902188	0.78898047474791	1.59731521029493	-0.10239656642292	0.945439219002727	0.998431161219273
Merged-chr11-32267658-4	chr11	32267563	32267763	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_104306)	promoter-TSS (NR_104306)	44.0	NM_181569	17168.0	Mm.263161	NM_181569	ENSMUSG00000020289	Nprl3	Aag|CGTHBA|HS-26|HS-40|Mare|Phg|Prox1|m(alpha)RE	nitrogen permease regulator-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-24498659-4	chr12	24498496	24498696	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028341)	promoter-TSS (NR_028341)	15.0	NR_028341	21340.0	Mm.39082	NM_020614	ENSMUSG00000059669	Taf1b	4930408G01Rik|A230108M10Rik|TAFI68|Tafi86|p63	TATA-box binding protein associated factor, RNA polymerase I, B	protein-coding	4.9973444864597	5.6952820352394	5.61363585442581	4.96501630348309	5.65229388127048	5.12691385030974	5.67506570137451	4.98813274948537	0.0557676769586184	0.859278272820129	0.998431161219273
Merged-chr5-136046131-2	chr5	136046031	136046231	+	624.208374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7635.0	NM_175309	100647.0	Mm.3089	NM_175309	ENSMUSG00000042985	Upk3b	AI447729|AI957187|P35|PMS2L14|UpIIIb	uroplakin 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80680263-4	chr10	80680139	80680339	+	988.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3946.0	NM_021462	17347.0	Mm.42126	NM_021462	ENSMUSG00000020190	Mknk2	2010016G11Rik|Gprk7|Mnk2	MAP kinase-interacting serine/threonine kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35469120-1	chr17	35469020	35469220	+	562.0	f0_balb.idr	promoter-TSS (NM_010391)	promoter-TSS (NM_010391)	-969.0	NM_010391	15007.0	Mm.88795	NM_010391	ENSMUSG00000067235	H2-Q10	H-2Q10|Q10|Qa10	histocompatibility 2, Q region locus 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16283564-2	chr7	16283464	16283664	+	718.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172297, intron 2 of 10)	intron (NM_172297, intron 2 of 10)	1095.0	NM_172297	243846.0	Mm.482401	NM_172297	ENSMUSG00000041375	Ccdc9	2600011L02Rik	coiled-coil domain containing 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-11049081-5	chr8	11048982	11049182	+	859.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_046017, intron 2 of 4)	intron (NR_046017, intron 2 of 4)	-40652.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-82692333-4	chr18	82692259	82692459	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177832, intron 1 of 29)	CpG	375.0	NM_177832	329002.0	Mm.34438	NM_177832	ENSMUSG00000041258	Zfp236	AI447957|Gm335	zinc finger protein 236	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-119805766-1	chr8	119805666	119805866	+	541.0	f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-27350.0	NM_028883	74347.0	Mm.358759	NM_028883	ENSMUSG00000034105	Tldc1	4632415K11Rik|Kiaa1609	TBC/LysM associated domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-23745939-2	chr17	23745849	23746049	+	684.083374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028416)	promoter-TSS (NM_028416)	-120.0	NM_028416	73016.0	Mm.221319	NM_028416	ENSMUSG00000040680	Kremen2	2900054E04Rik|Krm2	kringle containing transmembrane protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-77936104-4	chr9	77936009	77936209	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134255, intron 1 of 7)	intron (NM_134255, intron 1 of 7)	18744.0	NM_134255	68801.0	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	3.4721209887936	2.80266329070118	2.85308565361221	3.50801562730178	3.69476369398308	4.45055282030477	4.2179222356259	4.14792366109006	1.36738106439012	0.00783299921757942	0.0917179485483259
Merged-chr3-54725326-2	chr3	54725226	54725426	+	600.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358017, intron 22 of 24)	B1_Mus1|SINE|Alu	10038.0	NM_027148	69639.0	Mm.29253	NM_027148	ENSMUSG00000027752	Exosc8	2310032N20Rik|CIP3|mKIAA4013	exosome component 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133756868-4	chr4	133756760	133756960	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-3249.0	NM_001080819	93760.0	Mm.22478	NM_001080819	ENSMUSG00000007880	Arid1a	1110030E03Rik|BAF250a|Osa1|Smarcf1	AT rich interactive domain 1A (SWI-like)	protein-coding	4.42238860348778	4.92930624560729	5.39015028419481	5.31746351225209	5.34713470413643	4.5312470560096	5.51014265752137	5.47233084635102	0.248392224414748	0.471794468163653	0.926125823511231
Merged-chr11-53255044-2	chr11	53254944	53255144	+	734.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45435.0	NM_008300	15525.0	Mm.239865	NM_008300	ENSMUSG00000020361	Hspa4	70kDa|AI317151|APG-2|Hsp110|Hsp70RY|mKIAA4025	heat shock protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134981059-1	chr6	134980959	134981159	+	554.0	f1_c57bl6.idr	promoter-TSS (NM_001109914)	promoter-TSS (NM_001109914)	-942.0	NM_001109914	381823.0	Mm.296104	NM_001109914	ENSMUSG00000090698	Apold1	Gm1075	apolipoprotein L domain containing 1	protein-coding	-0.119917712264568	-0.228996741182912	0.044750619913269	0.125444796610508	-0.237872070243595	-0.228283942979317	-0.231446031303393	0.130396095315187	-0.972785321151713	0.675478424478812	1
Merged-chr13-5865465-4	chr13	5865346	5865546	+	935.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011803, intron 2 of 3)	intron (NM_011803, intron 2 of 3)	3957.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80037406-2	chr10	80037306	80037506	+	774.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025554, intron 2 of 6)	intron (NM_025554, intron 2 of 6)	2253.0	NM_025554	66420.0	Mm.18579	NM_025554	ENSMUSG00000004667	Polr2e	2410021N14Rik|25kDa|AW208866|RPB5|XAP4	polymerase (RNA) II (DNA directed) polypeptide E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-9166865-2	chr13	9166765	9166965	+	558.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172585, intron 15 of 17)	intron (NM_172585, intron 15 of 17)	72984.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-75085628-4	chr15	75085528	75085728	+	991.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	T-rich|Low_complexity|Low_complexity	26309.0	NM_001357693	100041546.0	Mm.482110	NM_001099217	ENSMUSG00000022584	Ly6c2	Ly-6C.2|Ly-6C2	lymphocyte antigen 6 complex, locus C2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-9818178-4	chr3	9818076	9818276	+	923.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195031, intron 1 of 8)	intron (NM_001195031, intron 1 of 8)	15503.0	NM_053182	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	1.31611048380923	0.623552671566398	0.814671860657547	0.603400932315462	1.03058630355859	1.5450665116673	1.26409074293545	0.604952048226789	1.21542292826468	0.436616630545294	0.908362185228875
Merged-chr13-56176003-3	chr13	56175844	56176044	+	696.900024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001168615, exon 3 of 3)	3' UTR (NM_001168615, exon 3 of 3)	2941.0	NM_145976	212937.0	Mm.116697	NM_145976	ENSMUSG00000049625	Tifab	-	TRAF-interacting protein with forkhead-associated domain, family member B	protein-coding	-0.14424518165119	-0.259753944451011	-0.263263058802638	0.114846080775009	0.0712464431946358	-0.0826659697495979	-0.262491529024062	-0.117606708139012	0.34122893499864	0.876489767738833	1
Merged-chr11-115633052-4	chr11	115632895	115633095	+	999.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4700.0	NM_001252395	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-94482982-4	chr3	94482887	94483087	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110353, intron 1 of 11)	intron (NR_110353, intron 1 of 11)	265.0	NR_110353	78784.0	Mm.44292	NM_172434	ENSMUSG00000028137	Celf3	4930415M08Rik|BRUNOL1|CAGH4|ERDA4|ETR-1|Tnrc4	CUGBP, Elav-like family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44327866-2	chr9	44327766	44327966	+	859.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_007875, intron 2 of 8)	ID4|SINE|ID	1021.0	NM_007875	13478.0	Mm.18353	NM_007875	ENSMUSG00000032123	Dpagt1	AU021132|Dpagt2|GPT|Gnpta	dolichyl-phosphate (UDP-N-acetylglucosamine) acetylglucosaminephosphotransferase 1 (GlcNAc-1-P transferase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-180920096-4	chr2	180919963	180920163	+	858.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173761, intron 2 of 4)	intron (NM_173761, intron 2 of 4)	873.0	NM_173761	228994.0	Mm.30205	NM_173761	ENSMUSG00000038848	Ythdf1	2210410K23Rik|8030473O16	YTH domain family 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-57578528-4	chr18	57578409	57578609	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029290, intron 3 of 6)	intron (NM_029290, intron 3 of 6)	-26112.0	NR_015494	75084.0	Mm.243841	NR_015494	ENSMUSG00000086607	4930511M06Rik	-	RIKEN cDNA 4930511M06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85467683-2	chr12	85467583	85467783	+	706.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6207.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-59019195-1	chr2	59019095	59019295	+	581.0	f0_balb.idr	intron (NM_001362394, intron 1 of 13)	intron (NM_001362394, intron 1 of 13)	141488.0	NM_001362393	227933.0	Mm.330234	NM_177650	ENSMUSG00000036641	Ccdc148	5830402J09|Gm38473	coiled-coil domain containing 148	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-192137154-3	chr1	192137044	192137244	+	949.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033536, intron 1 of 3)	CpG	246.0	NR_033536	100038712.0	Mm.474908	NR_033536	ENSMUSG00000097316	Gm10516	-	predicted gene 10516	ncRNA	2.66288927910307	3.20665357360608	3.76351099400612	1.71835101892996	2.6866633437878	3.23072091319064	3.36462294663562	1.44839173351834	-0.296672087895687	0.725391353187915	0.998431161219273
Merged-chr3-87151064-1	chr3	87150964	87151164	+	1000.0	f1_c57bl6.idr	intron (NM_001170985, intron 1 of 15)	intron (NM_001170985, intron 1 of 15)	23683.0	NM_001170985	170643.0	Mm.89552	NM_130867	ENSMUSG00000041734	Kirrel	6720469N11Rik|Kirrel1|Neph1	kirre like nephrin family adhesion molecule 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-66219936-4	chr17	66219886	66220086	+	893.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	96466.0	NM_001348292	320209.0	Mm.259605	NM_001003919	ENSMUSG00000035842	Ddx11	4732462I11Rik|CHL1|CHLR1|KRG2|essa15a	DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-26297568-4	chr6	26297467	26297667	+	836.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	366141.0	NR_040771	626904.0	Mm.126787	NR_040771	ENSMUSG00000106799	Gm20756	-	predicted gene, 20756	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-7254865-3	chr9	7254734	7254934	+	703.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1A|DNA|hAT-Charlie	-17680.0	NM_008607	17386.0	Mm.5022	NM_008607	ENSMUSG00000050578	Mmp13	Clg|MMP-13|Mmp1	matrix metallopeptidase 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-102099814-2	chr7	102099714	102099914	+	838.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007491, intron 1 of 4)	intron (NM_007491, intron 1 of 4)	415.0	NR_111935	11875.0	Mm.2816	NM_007491	ENSMUSG00000070424	Art5	ARTC5|Yac-2	ADP-ribosyltransferase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-38299282-4	chr15	38299160	38299360	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013692, intron 1 of 3)	CpG	640.0	NM_001357677	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-22932817-2	chr2	22932717	22932917	+	707.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019501, intron 9 of 10)	ID_B1|SINE|B4	37295.0	NM_001355467	56075.0	Mm.249752	NM_019501	ENSMUSG00000026784	Pdss1	2610203G20Rik|2700031G06Rik|TPT|TPT 1|Tprt|mDLP1|mSPS1	prenyl (solanesyl) diphosphate synthase, subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101337071-3	chr15	101337007	101337207	+	854.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32245.0	NR_035462	100316694.0		NR_035462	ENSMUSG00000088459	Mir1941	mmu-mir-1941	microRNA 1941	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128396622-2	chr2	128396522	128396722	+	820.333313	f1_balb.idr|f1_c57bl6.idr	intron (NR_028591, intron 1 of 1)	B4A|SINE|B4	32729.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-38037194-4	chr13	38037100	38037300	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027724)	promoter-TSS (NM_027724)	211.0	NM_024242	71340.0	Mm.297130	NM_024242	ENSMUSG00000021428	Riok1	3110046C13Rik|5430416A05Rik|Ad034	RIO kinase 1	protein-coding	5.62324201791339	4.70508171912455	4.88040067308995	5.20338178402411	4.85550020692229	4.37416671620476	4.82961412541234	5.07111520666335	-0.417504778260659	0.227973717895793	0.72106957756012
Merged-chr7-126645860-3	chr7	126645760	126645960	+	793.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3449.0	NM_029339	75565.0	Mm.45686	NM_029339	ENSMUSG00000030714	Sgf29	1700023O11Rik|9530025I05Rik|Ccdc101	SAGA complex associated factor 29	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-104028755-2	chr2	104028655	104028855	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175161)	promoter-TSS (NM_175161)	-394.0	NM_175161	70986.0	Mm.460738	NM_175161		4931422A03Rik	-	RIKEN cDNA 4931422A03 gene	protein-coding	-0.296938455204668	0.697741062060029	-0.285426713454492	-0.289735095943693	0.00597178452361427	-0.278629371565526	-0.0840590263747952	-0.288980793945787	-1.56667667596197	0.509662353195032	1
Merged-chr18-40220417-2	chr18	40220317	40220517	+	787.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1018.0	NM_023311	67180.0	Mm.270382	NM_023311	ENSMUSG00000024487	Yipf5	2610311I19Rik|AA408236|Yip1a	Yip1 domain family, member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-26154101-4	chr8	26154037	26154237	+	599.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4032.0	NM_199042	73754.0	Mm.383241	NM_199042	ENSMUSG00000037214	Thap1	4833431A01Rik|AW490810	THAP domain containing, apoptosis associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-148959511-4	chr3	148959419	148959619	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4884.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	4.66417525086062	5.49502218618019	5.12187667474345	5.0290481369576	4.50508307282472	5.16492580607565	3.61596786995438	5.01833846849887	-0.493576129635517	0.205914981012104	0.693707835750198
Merged-chr7-99474085-2	chr7	99473985	99474185	+	993.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_028145)	TTS (NM_028145)	5622.0	NR_002173	449631.0	Mm.236868	NR_002173	ENSMUSG00000064966	Snord15b	Gm5775|Rnu15-b|Rnu15b|U15B	small nucleolar RNA, C/D box 14B	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70174763-1	chr11	70174663	70174863	+	551.0	f0_balb.idr	Intergenic	MTD|LTR|ERVL-MaLR	8140.0	NM_010796	17312.0	Mm.252405	NM_010796	ENSMUSG00000000318	Clec10a	CD301a|M-ASGP-BP-1|Mgl|Mgl1	C-type lectin domain family 10, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-25694074-4	chr14	25693962	25694162	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134084)	promoter-TSS (NM_134084)	-108.0	NM_134084	105675.0	Mm.41656	NM_134084	ENSMUSG00000021868	Ppif	AW457192|CyP-D|CyP-F|CypD|PPIase	peptidylprolyl isomerase F (cyclophilin F)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-143954649-2	chr1	143954549	143954749	+	666.583374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5b|LINE|L1	49500.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-49839144-3	chr16	49839039	49839239	+	785.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16515.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-68715595-4	chr10	68715510	68715710	+	942.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8136.0	NM_177794	327766.0	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-49802065-2	chr16	49801965	49802165	+	783.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-53589.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-20897143-2	chr18	20897043	20897243	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1065.0	NM_177038	75964.0	Mm.273769	NM_029491	ENSMUSG00000033382	Trappc8	5033403J15Rik|AI845423|D030074E01Rik|Trs85|mKIAA1012	trafficking protein particle complex 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-101853485-2	chr5	101853385	101853585	+	701.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 57 of 66)	MTD|LTR|ERVL-MaLR	88355.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5809806-2	chr19	5809706	5809906	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-7134.0	NR_002847	72289.0	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-20403454-4	chr16	20403354	20403554	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176839, intron 5 of 6)	intron (NM_176839, intron 5 of 6)	22940.0	NM_013790	27416.0	Mm.20845	NM_013790	ENSMUSG00000022822	Abcc5	2900011L11Rik|AI132311|Abcc5a|Abcc5b|Mrp5	ATP-binding cassette, sub-family C (CFTR/MRP), member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-135690919-4	chr3	135690816	135691016	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008689, intron 1 of 24)	CpG	631.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81542964-2	chr10	81542864	81543064	+	567.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010301, intron 1 of 6)	intron (NM_010301, intron 1 of 6)	2082.0	NM_010301	14672.0	Mm.260925	NM_010301	ENSMUSG00000034781	Gna11	Dsk7|E430025L19	guanine nucleotide binding protein, alpha 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-30976036-2	chr16	30975936	30976136	+	811.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_198626, intron 3 of 3)	intron (NM_198626, intron 3 of 3)	105396.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-125436509-2	chr1	125436409	125436609	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001205385)	promoter-TSS (NM_001205385)	-782.0	NM_001205385	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-33718784-4	chr17	33718681	33718881	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145486)	promoter-TSS (NM_145486)	-104.0	NR_045522	224703.0	Mm.311439	NM_145486	ENSMUSG00000079557	March2	9530046H09Rik|MARCH-II	membrane-associated ring finger (C3HC4) 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-36584645-2	chr5	36584533	36584733	+	807.958374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113362, intron 2 of 14)	intron (NM_001113362, intron 2 of 14)	1593.0	NM_001113362	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-83744507-4	chr2	83744396	83744596	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008402, intron 2 of 29)	intron (NM_008402, intron 2 of 29)	20099.0	NM_008402	16410.0	Mm.227	NM_008402	ENSMUSG00000027087	Itgav	1110004F14Rik|2610028E01Rik|CD51|D430040G12Rik	integrin alpha V	protein-coding	1.83792255328035	1.22461069395875	1.19236578682492	2.29849923474175	1.97900109825172	2.09360466305169	2.27933468954168	3.08220839688773	1.7026991087294	0.0963171645853395	0.482041159911667
Merged-chr10-69252555-3	chr10	69252458	69252658	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252637, intron 4 of 10)	intron (NM_001252637, intron 4 of 10)	39364.0	NM_001252638	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-48959003-4	chr7	48958901	48959101	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001111016)	promoter-TSS (NM_001111016)	-72.0	NM_001111016	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-24435906-2	chr2	24435806	24436006	+	892.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_011040, exon 9 of 12)	exon (NM_011040, exon 9 of 12)	39693.0	NM_011040	18510.0	Mm.2533	NM_011040	ENSMUSG00000026976	Pax8	Pax-8	paired box 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-87460075-2	chr11	87459911	87460111	+	776.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199293, intron 2 of 30)	LTRIS_Mus|LTR|ERV1	32420.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3906352-2	chr19	3906252	3906452	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001136091, intron 1 of 19)	intron (NM_001136091, intron 1 of 19)	631.0	NM_001167784	27060.0	Mm.271689	NM_016921	ENSMUSG00000001750	Tcirg1	ATP6N1C|ATP6a3|Atp6i|OC-116|OPTB1|Stv1|TIRC7|Vph1|oc	T cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 protein A3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-151716013-2	chr1	151715913	151716113	+	585.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_022018, intron 13 of 13)	intron (NM_022018, intron 13 of 13)	38714.0	NR_151474	102640772.0		NR_151473	ENSMUSG00000100594	2810414N06Rik	-	RIKEN cDNA 2810414N06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-48230883-4	chr17	48230770	48230970	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER54A|LTR|ERVL	-1869.0	NM_001347399	58217.0	Mm.248352	NM_021406	ENSMUSG00000042265	Trem1	-	triggering receptor expressed on myeloid cells 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-94583061-3	chr6	94582950	94583150	+	974.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026255, intron 6 of 9)	intron (NM_026255, intron 6 of 9)	23365.0	NR_106008	102466992.0		NR_106008	ENSMUSG00000098531	Mir7041	Gm27872|mmu-mir-7041	microRNA 7041	ncRNA	-0.780507411323491	-0.770201048850769	-0.0876146456965483	-0.776182298477195	-0.499830447499526	-0.769368699703383	-0.772832506895163	-0.775727174717696	-1.48766019666651	0.617325031110839	1
Merged-chr2-141898306-2	chr2	141898206	141898406	+	703.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013802, intron 8 of 18)	intron (NM_001013802, intron 8 of 18)	1003158.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-64305709-4	chr1	64305577	64305777	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-184288.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120574764-2	chr11	120574664	120574864	+	840.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1511.0	NM_011032	18453.0	Mm.16660	NM_011032	ENSMUSG00000025130	P4hb	ERp59|PDI|Pdia1|Thbp	prolyl 4-hydroxylase, beta polypeptide	protein-coding	1.0913595224101	1.16859514858927	0.498017680464851	0.490631917880438	1.10392784218947	1.18070627763769	0.500118751513919	0.491926313920833	0.0405801498943848	0.981484394958573	1
Merged-chr5-32996022-3	chr5	32995924	32996124	+	975.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22792.0	NM_011738	22629.0	Mm.332314	NM_011738	ENSMUSG00000018965	Ywhah	-	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide	protein-coding	1.11551352731938	2.00684320017816	0.755102524400302	0.7368517829858	1.424570988713	2.53172103627094	1.24192829471925	0.740085162858514	1.1258787806642	0.41119503651775	0.894293301777637
Merged-chr1-171370047-4	chr1	171369950	171370150	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027893)	promoter-TSS (NM_027893)	-123.0	NM_027893	71740.0	Mm.263414	NM_027893	ENSMUSG00000006411	Nectin4	1200017F15Rik|Prr4|Pvrl4	nectin cell adhesion molecule 4	protein-coding	1.79611183984157	2.36917082398673	2.18549496163022	1.03317052122323	1.4031560678228	2.48011593473186	1.52196584192462	1.03683713803742	-0.515940856064034	0.658727853286229	0.988998513021795
Merged-chr2-6436230-4	chr2	6436136	6436336	+	891.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181399, intron 13 of 13)	intron (NM_181399, intron 13 of 13)	83500.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-110645363-4	chr9	110645277	110645477	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183276, intron 1 of 53)	intron (NM_183276, intron 1 of 53)	8784.0	NM_183276	235627.0	Mm.335481	NM_183276	ENSMUSG00000056724	Nbeal2	1110014F23Rik|BC042396|mKIAA0540	neurobeachin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-35903174-4	chr16	35903091	35903291	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31809.0	NM_001039530	547253.0	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	2.61612470822383	2.57750313526898	1.97983037697681	2.89370851468941	1.98239791095131	2.22135496339884	1.35406931721574	2.08176442956199	-1.44351168212058	0.106833561223587	0.510672935283105
Merged-chr10-19102749-1	chr10	19102649	19102849	+	997.0	f1_c57bl6.idr	Intergenic	Intergenic	-39000.0	NR_038021	100504265.0	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	-1.50763005145187	-1.31670893484727	-1.48450067913376	-1.49273687365037	-1.50530255950595	-1.31453611646887	-1.32446577640663	-1.49126259876973	0.882534791298622	0.780536272052228	1
Merged-chr1-151926277-4	chr1	151926190	151926390	+	910.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197990, intron 3 of 5)	intron (NM_197990, intron 3 of 5)	164030.0	NM_197990	69399.0	Mm.278031	NM_197990	ENSMUSG00000032666	1700025G04Rik	2610510E02Rik|2900042O04Rik	RIKEN cDNA 1700025G04 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-67007666-4	chr14	67007582	67007782	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009761, intron 1 of 5)	intron (NM_009761, intron 1 of 5)	1195.0	NM_009761	12177.0	Mm.29820	NM_009761	ENSMUSG00000022051	Bnip3l	C86132|D14Ertd719e|Nip3L|Nix	BCL2/adenovirus E1B interacting protein 3-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45456342-9	chr7	45456204	45456404	+	993.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_030678, exon 16 of 16)	3' UTR (NM_030678, exon 16 of 16)	3582.0	NM_010240	14325.0	Mm.30357	NM_010240	ENSMUSG00000050708	Ftl1	Ftl|Ftl-1|L-ferritin	ferritin light polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-74274498-1	chr13	74274398	74274598	+	551.0	f1_balb.idr	intron (NM_001317351, intron 2 of 9)	intron (NM_001317351, intron 2 of 9)	17833.0	NM_009644	11624.0	Mm.290446	NM_009644	ENSMUSG00000021575	Ahrr	mKIAA1234	aryl-hydrocarbon receptor repressor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-118296401-4	chr12	118296295	118296495	+	986.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166385, intron 3 of 5)	ID_B1|SINE|B4	5045.0	NM_009239	20688.0	Mm.34699	NM_009239	ENSMUSG00000025323	Sp4	5730497N03Rik|HF-1b|HF1-b	trans-acting transcription factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-118111785-4	chr2	118111659	118111859	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011580)	promoter-TSS (NM_011580)	-117.0	NM_011580	21825.0	Mm.4159	NM_011580	ENSMUSG00000040152	Thbs1	TSP-1|TSP1|Thbs-1|tbsp1	thrombospondin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107613402-1	chr9	107613302	107613502	+	642.333313	f1_c57bl6.idr	TTS (NM_008138)	TTS (NM_008138)	-4161.0	NM_001291539	20347.0	Mm.4083	NM_009153	ENSMUSG00000057969	Sema3b	SemA|Semaa|sema5|semaV	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-119340008-4	chr9	119339916	119340116	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010851)	promoter-TSS (NM_010851)	24.0	NM_010851	17874.0	Mm.213003	NM_010851	ENSMUSG00000032508	Myd88	-	myeloid differentiation primary response gene 88	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-47008996-1	chr4	47008896	47009096	+	691.0	f1_balb.idr	Intergenic	Intergenic	-17282.0	NM_001081141	242425.0	Mm.101909	NM_001081141	ENSMUSG00000039809	Gabbr2	GABABR2|Gb2|Gm425|Gpr51	gamma-aminobutyric acid (GABA) B receptor, 2	protein-coding	1.15677932784576	1.05463487701183	0.662218814687949	0.654012745065261	1.43049466245087	0.675119159073067	1.16470514964504	1.34298355342376	1.31530102540285	0.391187062336618	0.880464427322676
Merged-chr13-60618308-1	chr13	60618208	60618408	+	549.0	f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	16097.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-32758994-4	chr19	32758899	32759099	+	826.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008960, intron 1 of 8)	intron (NM_008960, intron 1 of 8)	1422.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-78682428-1	chr17	78682328	78682528	+	847.6666869999999	f0_balb.idr	intron (NM_011500, intron 6 of 17)	intron (NM_011500, intron 6 of 17)	54132.0	NM_011500	268980.0	Mm.311915	NM_011500	ENSMUSG00000024077	Strn	AU022939|D130055P19	striatin, calmodulin binding protein	protein-coding	2.17755994552492	3.23572890780652	3.2189551111095	2.72739793153765	3.34999687097746	3.04839044901438	3.40653477988452	3.30570575322398	0.666581437860506	0.295363136518293	0.7986401962885
Merged-chr11-48809032-4	chr11	48808939	48809139	+	999.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145377, intron 3 of 5)	intron (NM_145377, intron 3 of 5)	5900.0	NR_028564	100216540.0		NR_028564	ENSMUSG00000064780	Snord95	-	small nucleolar RNA, C/D box 95	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-115480894-4	chr6	115480787	115480987	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001308354, intron 7 of 7)	MIR|SINE|MIR	58821.0	NM_011146	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-38472850-4	chr15	38472736	38472936	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17711.0	NR_105916	102465574.0		NR_105916	ENSMUSG00000099110	Mir6951	Gm27765|mmu-mir-6951	microRNA 6951	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-13370045-4	chr15	13369959	13370159	+	943.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-196384.0	NM_007666	12563.0	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72158303-2	chr6	72158203	72158403	+	694.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-35106.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-122169752-3	chr3	122169664	122169864	+	630.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007378, intron 44 of 49)	intron (NM_007378, intron 44 of 49)	-75793.0	NM_008129	14630.0	Mm.292676	NM_008129	ENSMUSG00000028124	Gclm	AI649393|Gcmc|Glclr	glutamate-cysteine ligase, modifier subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-37044428-2	chr11	37044328	37044528	+	604.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-100187.0	NM_011856	23964.0	Mm.439889	NM_011856	ENSMUSG00000049336	Tenm2	Odz2|Odz3|Ten-2|Ten-m2	teneurin transmembrane protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24027478-2	chr17	24027378	24027578	+	638.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	-10765.0	NM_175440	213171.0	Mm.133083	NM_175440	ENSMUSG00000050762	Prss27	CAPH2|Mpn|marapsin	protease, serine 27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-139211105-1	chr7	139211005	139211205	+	559.0	f1_c57bl6.idr	intron (NM_001162540, intron 1 of 11)	intron (NM_001162540, intron 1 of 11)	-1883.0	NM_027164	76612.0	Mm.17757	NM_027164	ENSMUSG00000015980	Lrrc27	1700071K18Rik|2310044E02Rik	leucine rich repeat containing 27	protein-coding	0.415158602007817	0.0467561388251023	0.905235919471985	0.0361487057713845	0.310554651917676	0.0481022855061574	0.228313927935318	0.036957591905663	-1.80366321099923	0.384996170064991	1
Merged-chr6-71193369-4	chr6	71193263	71193463	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6516.0	NM_017399	14080.0	Mm.22126	NM_017399	ENSMUSG00000054422	Fabp1	Fabpl|L-FABP	fatty acid binding protein 1, liver	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-16877133-8	chr12	16877014	16877214	+	911.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17864.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	3.43711964248997	1.5274649906073	2.22133875186632	2.47756758481179	3.52004336080124	4.31381212246723	3.25831814840889	1.95684098020721	1.44066044673345	0.0754172721154195	0.416340925835281
Merged-chr11-8625420-3	chr11	8625307	8625507	+	705.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 1 of 30)	intron (NM_001083587, intron 1 of 30)	39128.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180257793-2	chr1	180257693	180257893	+	552.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1493.0	NM_001128605	19165.0	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59203404-2	chr15	59203295	59203495	+	806.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-103553.0	NR_045613	100416830.0	Mm.490788	NR_045613	ENSMUSG00000098528	Zfp572	4930472F24Rik	zinc finger protein 572	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-92881041-2	chr7	92880941	92881141	+	887.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028243, intron 1 of 8)	ORR1F|LTR|ERVL-MaLR	5788.0	NM_028243	72461.0	Mm.389969	NM_028243	ENSMUSG00000061119	Prcp	2510048K03Rik|2610104A14Rik|AI451719|HUMPCP|PCP	prolylcarboxypeptidase (angiotensinase C)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5404732-1	chr19	5404632	5404832	+	792.5	f1_c57bl6.idr	Intergenic	Intergenic	-2083.0	NR_015545	74931.0	Mm.388511	NR_015545	ENSMUSG00000086938	4930481A15Rik	-	RIKEN cDNA 4930481A15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-44173646-4	chr16	44173524	44173724	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029889, intron 1 of 7)	CpG	227.0	NM_001029889	207806.0	Mm.310566	NM_001029889	ENSMUSG00000068284	Usf3	5530400K22Rik|Gm1779|Gm608|mKIAA2018	upstream transcription factor family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-24136691-4	chr16	24136622	24136822	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54032.0	NR_155457	108168278.0	Mm.417246	NR_155457		Gm46545	-	predicted gene, 46545	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-62864409-3	chr14	62864335	62864535	+	737.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175546, intron 1 of 11)	intron (NM_175546, intron 1 of 11)	-1107.0	NR_105860	102465311.0		NR_105860	ENSMUSG00000098858	Mir6541	Gm27311|mmu-mir-6541	microRNA 6541	ncRNA	3.84800335477691	2.51311733183531	3.94399936815276	3.66692628758017	2.78264306709771	2.32518913990999	3.43064258706255	3.80358659171741	-0.606412232262139	0.345410121800285	0.845991557163818
Merged-chr4-122886525-4	chr4	122886428	122886628	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358036)	promoter-TSS (NM_001358036)	-452.0	NM_001358036	12331.0	Mm.8687	NM_007598	ENSMUSG00000028656	Cap1	-	CAP, adenylate cyclase-associated protein 1 (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-40851141-3	chr8	40851033	40851233	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11234.0	NM_007514	11988.0	Mm.4676	NM_007514	ENSMUSG00000031596	Slc7a2	20.5|AI158848|Atrc2|CAT-2|Cat2|Tea	solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-111724131-2	chr10	111724031	111724231	+	771.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C|LTR|ERVK	-129858.0	NR_045344	71321.0	Mm.410785	NR_045344	ENSMUSG00000097082	4933440J02Rik	-	RIKEN cDNA 4933440J02 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-68239281-2	chr15	68239181	68239381	+	940.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_152182, intron 1 of 13)	intron (NR_152182, intron 1 of 13)	19575.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56558673-2	chr17	56558573	56558773	+	650.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4286.0	NR_130128	100504425.0	Mm.384143	NR_130128	ENSMUSG00000110218	Gm20219	Tincr	predicted gene, 20219	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-86827164-4	chr10	86827056	86827256	+	911.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175331, intron 12 of 13)	MIRb|SINE|MIR	48151.0	NM_175331	103466.0	Mm.200446	NM_175331	ENSMUSG00000054027	Nt5dc3	AU040402|AW540062|C630002B14Rik|TU12B1-TY	5'-nucleotidase domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-65142855-3	chr6	65142744	65142944	+	859.56665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019455, intron 1 of 5)	intron (NM_019455, intron 1 of 5)	1886.0	NM_019455	54486.0	Mm.410688	NM_019455	ENSMUSG00000029919	Hpgds	H-PGDS|Ptgds2	hematopoietic prostaglandin D synthase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-90070772-4	chr16	90070677	90070877	+	918.94165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-71460.0	NR_033476	100038709.0	Mm.484070	NR_033476		Gm10789	-	predicted gene 10789	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-36194428-2	chr17	36194328	36194528	+	864.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4277.0	NM_008208	15043.0	Mm.426002	NM_008208	ENSMUSG00000054128	H2-T3	H-2T3|H2-Tw3|MumuTL|TL	histocompatibility 2, T region locus 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-21718406-1	chr18	21718306	21718506	+	801.0	f0_balb.idr	Intergenic	L1MB7|LINE|L1	-66038.0	NM_001081403	225266.0	Mm.436836	NM_001081403	ENSMUSG00000042514	Klhl14	6330403N15Rik|AI785250|printor	kelch-like 14	protein-coding	-0.838354004625293	-0.829045532231904	-0.83287544315711	-0.834942405164556	-0.476445790202573	-0.642105685927108	-0.832282936247967	-0.543041131766859	2.95820913597882	0.290259887020484	1
Merged-chr16-10975605-2	chr16	10975505	10975705	+	905.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019980, intron 1 of 3)	intron (NM_019980, intron 1 of 3)	17516.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-58020305-3	chr15	58020195	58020395	+	925.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13999.0	NM_029418	75758.0	Mm.455792	NM_029418	ENSMUSG00000101892	9130401M01Rik	AI849328	RIKEN cDNA 9130401M01 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-172369316-2	chr2	172369216	172369416	+	550.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291185, intron 1 of 8)	intron (NM_001291185, intron 1 of 8)	1254.0	NM_001291185	20878.0	Mm.249363	NM_011497	ENSMUSG00000027496	Aurka	AIRK1|ARK-1|AU019385|AW539821|Ark1|Aurora-A|Ayk1|IAK|IAK1|Stk6	aurora kinase A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-4557229-4	chr2	4557126	4557326	+	756.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 11 of 23)	intron (NM_001177843, intron 11 of 23)	-2528.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95624904-4	chr3	95624842	95625042	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019561)	promoter-TSS (NM_019561)	-38.0	NM_019561	56205.0	Mm.241365	NM_019561	ENSMUSG00000038619	Ensa	1700020C18Rik|2610007F17Rik|AI451924	endosulfine alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-60668911-2	chr13	60668881	60669081	+	616.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	66770.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	1.09237615845643	0.726673890465312	1.19202606652431	0.708775274753741	1.10187766136489	1.37579146278798	1.20242220294262	1.16170084539832	1.25384100617634	0.376036046693337	0.869190949440018
Merged-chr4-137387644-2	chr4	137387544	137387744	+	766.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22147.0	NM_001126318	242711.0	Mm.475541	NM_001126318	ENSMUSG00000078520	Cela3a	Gm13011	chymotrypsin-like elastase family, member 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-32671936-2	chr9	32671836	32672036	+	620.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24106.0	NM_011808	23871.0	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-103005280-4	chr11	103005168	103005368	+	968.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026551, intron 1 of 4)	intron (NM_026551, intron 1 of 4)	-5347.0	NR_105896	102466988.0		NR_105896	ENSMUSG00000098613	Mir6931	Gm27303|mmu-mir-6931	microRNA 6931	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91539717-2	chr16	91539617	91539817	+	637.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7377.0	NM_008338	15980.0	Mm.249364	NM_008338	ENSMUSG00000022965	Ifngr2	Ifgr2|Ifgt	interferon gamma receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-175688125-2	chr1	175688025	175688225	+	770.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_021350, exon 1 of 1)	exon (NM_021350, exon 1 of 1)	228.0	NM_021350	12663.0	Mm.440490	NM_021350	ENSMUSG00000078185	Chml	AI450814|E030003F13Rik|REP-2|Rep2	choroideremia-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-29399753-2	chr6	29399653	29399853	+	564.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145574, intron 3 of 15)	intron (NM_145574, intron 3 of 15)	827.0	NM_001201378	232664.0	Mm.251303	NM_145574	ENSMUSG00000029769	Ccdc136	4921511K06Rik|BC006583	coiled-coil domain containing 136	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30829603-4	chr2	30829511	30829711	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1311.0	NM_133346	72323.0	Mm.27656	NM_133346	ENSMUSG00000039483	Asb6	2510004M11Rik|AA409356	ankyrin repeat and SOCS box-containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-84820422-2	chr10	84820322	84820522	+	791.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001024918, intron 4 of 17)	intron (NM_001024918, intron 4 of 17)	-17726.0	NM_027689	71137.0	Mm.79070	NM_027689	ENSMUSG00000020037	Rfx4	4933412G19Rik|NYD-sp10	regulatory factor X, 4 (influences HLA class II expression)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-91093682-2	chr1	91093582	91093782	+	803.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008515, intron 10 of 22)	C-rich|Low_complexity|Low_complexity	40238.0	NM_001310732	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-79878825-4	chr11	79878700	79878900	+	920.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	83587.0	NM_144826	216987.0	Mm.274961	NM_144826	ENSMUSG00000035575	Utp6	4732497O03Rik|HCA66	UTP6 small subunit processome component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-3766053-1	chr13	3765953	3766153	+	787.0	f0_balb.idr	Intergenic	Intergenic	38265.0	NM_027416	70405.0	Mm.20079	NM_027416	ENSMUSG00000063130	Calml3	2310068O22Rik|AI326174	calmodulin-like 3	protein-coding	0.323469305855727	0.0866335949421836	0.0815207227657566	0.0775880437368679	0.435315977059801	0.564771169635627	0.0826468835038446	0.591255959531565	2.44154008057341	0.2465634984321	1
Merged-chr13-5888970-4	chr13	5888868	5889068	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27479.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-3292959-4	chr7	3292880	3293080	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001093766)	promoter-TSS (NM_001093766)	-48.0	NM_001093766	50918.0	Mm.29874	NM_016969	ENSMUSG00000068566	Myadm	D7Wsu62e	myeloid-associated differentiation marker	protein-coding	5.68152166705512	5.1951348376413	5.63798360733639	4.76400086119462	5.00838470295285	3.49713640121356	3.88234886657873	4.36649078388398	-1.25348960695453	0.00191754275293357	0.0322523522659303
Merged-chr9-66516929-2	chr9	66516829	66517029	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001302116, exon 14 of 14)	3' UTR (NM_001302116, exon 14 of 14)	-2336.0	NM_175206	74165.0	Mm.297998	NM_175206	ENSMUSG00000050503	Fbxl22	1110004B15Rik	F-box and leucine-rich repeat protein 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-78378986-2	chr16	78378886	78379086	+	675.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1805.0	NM_001297747	12228.0	Mm.392910	NM_009770	ENSMUSG00000022863	Btg3	ANA|tob5	B cell translocation gene 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-52267833-2	chr3	52267733	52267933	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019739)	promoter-TSS (NM_019739)	-504.0	NM_019739	56458.0	Mm.29891	NM_019739	ENSMUSG00000044167	Foxo1	AI876417|Afxh|FKHR|Fkhr1|Foxo1a	forkhead box O1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-99186997-4	chr4	99186902	99187102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F2|LTR|ERVL-MaLR	-6932.0	NM_175029	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	6.39447050043831	6.77950239220117	6.66270318785453	6.41093054325655	6.45835552924195	6.93667736583033	6.30172019700626	6.75722965599143	0.0694115935315136	0.737545011036548	0.998431161219273
Merged-chr10-80748841-4	chr10	80748755	80748955	+	886.912476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6348.0	NM_199322	208266.0	Mm.152371	NM_199322	ENSMUSG00000061589	Dot1l	A630076O07|AW907654|Dot1|KMT4|mDot1	DOT1-like, histone H3 methyltransferase (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-9113952-4	chr13	9113842	9114042	+	949.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172585, intron 1 of 17)	intron (NM_172585, intron 1 of 17)	20061.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-84620737-1	chr16	84620637	84620837	+	541.0	f1_c57bl6.idr	Intergenic	Intergenic	-59052.0	NR_040537	78023.0	Mm.243853	NR_040537		4930529L06Rik	-	RIKEN cDNA 4930529L06 gene	ncRNA	1.18950655858002	1.59393117776933	0.55859034202542	1.16804805889086	0.536494613215977	0.572764578193861	0.561161997993575	1.17608153952487	-2.02805282841077	0.225129457923594	0.717001488400471
Merged-chr13-102666956-4	chr13	102666852	102667052	+	927.81665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	C-rich|Low_complexity|Low_complexity	-26595.0	NM_001360519	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-102717678-4	chr9	102717609	102717809	+	867.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019764)	promoter-TSS (NM_019764)	-95.0	NM_019764	56332.0	Mm.21145	NM_019764	ENSMUSG00000032531	Amotl2	AW549739|C79691|Lccp|MASCOT|mKIAA0989	angiomotin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129541976-1	chr4	129541876	129542076	+	583.0	f1_balb.idr	intron (NM_008228, intron 1 of 13)	intron (NM_008228, intron 1 of 13)	670.0	NM_008228	433759.0	Mm.202504	NM_008228	ENSMUSG00000028800	Hdac1	HD1|Hdac1-ps|MommeD5|RPD3	histone deacetylase 1	protein-coding	0.620941260194774	0.745696173628215	0.321051636791768	1.52950450423444	0.301935983173352	0.333325765926684	0.864922271884279	0.314580086304106	-2.18407839907553	0.230480558686902	1
Merged-chr7-24611326-4	chr7	24611226	24611426	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001102613)	promoter-TSS (NM_001102613)	-2.0	NM_001102613	232970.0	Mm.333663	NM_001102613	ENSMUSG00000074277	Phldb3	EG232970|Gm10102	pleckstrin homology like domain, family B, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-11174039-3	chr8	11173938	11174138	+	931.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-138767.0	NM_009932	12827.0	Mm.181021	NM_009932	ENSMUSG00000031503	Col4a2	Col4a-2	collagen, type IV, alpha 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-39622361-2	chr12	39622261	39622461	+	892.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	415015.0	NM_007487	11861.0	Mm.12723	NM_007487	ENSMUSG00000047446	Arl4a	AI467555|Arl4	ADP-ribosylation factor-like 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70555232-2	chr14	70555132	70555332	+	551.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021877, intron 2 of 19)	intron (NM_021877, intron 2 of 19)	1176.0	NM_021877	15460.0	Mm.7598	NM_021877	ENSMUSG00000022096	Hr	ALUNC|AU|N|ba|bldy|hr|rh|rh-bmh|rhino	hairless	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-139615442-2	chr4	139615331	139615531	+	937.5	f0_c57.idr|f1_c57bl6.idr	intron (NM_001205173, intron 8 of 8)	MTD|LTR|ERVL-MaLR	-7463.0	NM_175438	212647.0	Mm.273571	NM_175438	ENSMUSG00000028737	Aldh4a1	A930035F14Rik|Ahd-1|Ahd1|Aldh4|Aldh5a1|E330022C09|P5cd|P5cdh|P5cdhl|P5cdhs|Ssdh1	aldehyde dehydrogenase 4 family, member A1	protein-coding	0.657254507373182	0.71726178700119	2.21141669181059	1.9177042672141	1.0507162219122	1.38622579672534	0.702554834481371	0.921697219560746	-1.77561799055233	0.216990123636329	0.707538695710375
Merged-chr4-34886066-2	chr4	34885966	34886166	+	634.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-3118.0	NM_013889	30046.0	Mm.38193	NM_013889	ENSMUSG00000039967	Zfp292	5730450D02Rik|5830493J20Rik|9430062L07Rik|AI449016|Krox-10|Zfp-15|Zfp15|Zn-15|Zn-16|mKIAA0530	zinc finger protein 292	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128337398-4	chr2	128337300	128337500	+	965.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028590, intron 1 of 2)	intron (NR_028590, intron 1 of 2)	91951.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-18993283-2	chr7	18993183	18993383	+	893.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145579, intron 2 of 2)	B1F|SINE|Alu	2038.0	NM_145579	232934.0	Mm.440069	NM_145579	ENSMUSG00000048481	Mypop	Myodysa|P42pop	Myb-related transcription factor, partner of profilin	protein-coding	-0.0976092977005884	-0.62037365109497	-0.623505440264222	-0.625911116626421	-0.371860634492833	-0.431857484070772	-0.622816027709547	-0.625491519859715	-0.497636464270087	0.855088170257225	1
Merged-chr3-30979880-2	chr3	30979780	30979980	+	811.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4A|LINE|L1	-10465.0	NM_001165956	241915.0	Mm.233173	NM_153421	ENSMUSG00000037652	Phc3	E030046K01Rik|Edr3|Hph3	polyhomeotic 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-95010504-2	chr11	95010404	95010604	+	582.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_146025, exon 1 of 10)	5' UTR (NM_146025, exon 1 of 10)	625.0	NM_146025	217125.0	Mm.297199	NM_146025	ENSMUSG00000047181	Samd14	AI839049|AI854782|BC034054	sterile alpha motif domain containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-35163846-2	chr9	35163746	35163946	+	559.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027030, intron 2 of 5)	intron (NM_027030, intron 2 of 5)	12141.0	NM_027030	69305.0	Mm.229110	NM_027030	ENSMUSG00000032040	Dcps	1700001E16Rik|AA408441	decapping enzyme, scavenger	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-142595388-2	chr3	142595288	142595488	+	634.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010259, intron 1 of 10)	intron (NM_010259, intron 1 of 10)	541.0	NM_010259	14468.0	Mm.457978	NM_010259	ENSMUSG00000040264	Gbp2b	Gbp-1|Gbp1|Mag-1|Mpa-1|Mpa1	guanylate binding protein 2b	protein-coding	-0.211710110093408	-0.664089044134948	-0.66736210898813	-0.146974361460899	-0.673431173837638	-0.663349994660731	-0.666640996874487	-0.669441417669647	-3.23597711383365	0.258329570839564	1
Merged-chr7-75366636-1	chr7	75366536	75366736	+	697.0	f0_balb.idr	Intergenic	Intergenic	-57374.0	NM_153579	64176.0	Mm.273082	NM_153579	ENSMUSG00000053025	Sv2b	A830038F04Rik|AI850768|mKIAA0735	synaptic vesicle glycoprotein 2 b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128545021-2	chr10	128544921	128545121	+	713.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_134003, exon 3 of 3)	exon (NM_134003, exon 3 of 3)	2723.0	NM_134003	103284.0	Mm.68289	NM_134003	ENSMUSG00000039810	Zc3h10	AI790326	zinc finger CCCH type containing 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-5793355-2	chr11	5793255	5793455	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001146309, intron 2 of 12)	intron (NM_001146309, intron 2 of 12)	4872.0	NM_013810	13169.0	Mm.256925	NM_013810	ENSMUSG00000020476	Dbnl	Abp1|SH3P7|mAbp1	drebrin-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-87857023-4	chr1	87856926	87857126	+	827.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177646, intron 1 of 29)	L1MB7|LINE|L1	-2727.0	NR_136921	100503175.0	Mm.426422	NR_136921	ENSMUSG00000101942	Gm19582	-	predicted gene, 19582	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-37870395-2	chr16	37870295	37870495	+	596.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_177093, intron 1 of 3)	intron (NM_177093, intron 1 of 3)	1995.0	NM_177093	320184.0	Mm.390882	NM_177093	ENSMUSG00000034158	Lrrc58	1810012N18Rik|C330018J07Rik	leucine rich repeat containing 58	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-95354785-2	chr11	95354685	95354885	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172543, intron 1 of 7)	intron (NM_172543, intron 1 of 7)	17767.0	NM_172543	215512.0	Mm.262113	NM_172543	ENSMUSG00000038893	Fam117a	5730593F17Rik|AW548096	family with sequence similarity 117, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-90369520-4	chr6	90369421	90369621	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030260)	promoter-TSS (NM_030260)	27.0	NM_030260	80292.0	Mm.100116	NM_030260	ENSMUSG00000034430	Zxdc	A930012H20|B930086F11Rik|BC003332	ZXD family zinc finger C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-105925851-4	chr1	105925703	105925903	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	64479.0	NR_151625	635504.0	Mm.359717	NR_151625		Gm7160	EG635504	predicted gene 7160	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-23519091-4	chr13	23518991	23519191	+	991.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	tRNA-Gln-CAA|tRNA|tRNA	-11953.0	NM_153173	69386.0	Mm.158272	NM_153173	ENSMUSG00000060981	Hist1h4h	1700024H08Rik	histone cluster 1, H4h	protein-coding	1.86471693821961	1.97576790895031	1.09782636300769	1.84478197658178	1.45720216430577	2.65618981006062	2.71212642590061	1.07843769762127	1.08199636630566	0.332410549321305	0.833345452772687
Merged-chr13-113032140-3	chr13	113032044	113032244	+	710.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3235.0	NM_001281487	238896.0		NM_001281487	ENSMUSG00000078926	Cdc20b	EG238896|EG622422	cell division cycle 20B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-103716433-2	chr2	103716333	103716533	+	563.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178890, intron 16 of 16)	intron (NM_178890, intron 16 of 16)	44837.0	NM_153126	98956.0	Mm.288005	NM_153126	ENSMUSG00000027185	Nat10	AI429152	N-acetyltransferase 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-34979723-2	chr2	34979623	34979823	+	561.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER90a|LTR|ERV1	-17951.0	NM_001326601	22029.0	Mm.239514	NM_009421	ENSMUSG00000026875	Traf1	4732496E14Rik	TNF receptor-associated factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-70826500-2	chr17	70826400	70826600	+	709.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR51B_Mm|LTR|ERVK?	20277.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-131916608-4	chr4	131916495	131916695	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_102394, intron 1 of 2)	intron (NR_102394, intron 1 of 2)	3434.0	NR_102394	545681.0	Mm.2478	NR_102393	ENSMUSG00000085667	Gm12992	-	predicted gene 12992	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-50366784-4	chr16	50366660	50366860	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027444, intron 2 of 16)	intron (NM_027444, intron 2 of 16)	65629.0	NM_027444	70508.0	Mm.28940	NM_027444	ENSMUSG00000022641	Bbx	5530401J07Rik|5730403O13Rik	bobby sox HMG box containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-52942935-3	chr2	52942858	52943058	+	829.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	85090.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-120652998-4	chr2	120652903	120653103	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43408.0	NM_001290807	66296.0	Mm.221900	NM_025475	ENSMUSG00000027285	Haus2	1700101G24Rik|2410007P03Rik|AU020217|Cep27	HAUS augmin-like complex, subunit 2	protein-coding	4.55580092049618	5.06198986541358	5.53843516980836	4.41729419087773	4.59120845312006	4.61207018203087	6.01500827181689	4.14851657461589	0.0988242616757651	0.823433945213108	0.998431161219273
Merged-chr2-25385960-2	chr2	25385860	25386060	+	739.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC1|LINE|L1	-9914.0	NM_009849	12496.0	Mm.482100	NM_009849	ENSMUSG00000015085	Entpd2	Cd39l1|NTPDase2	ectonucleoside triphosphate diphosphohydrolase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-18731220-3	chr14	18731120	18731320	+	858.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360327, intron 3 of 5)	intron (NM_001360327, intron 3 of 5)	162193.0	NM_001360328	218793.0	Mm.23551	NM_144839	ENSMUSG00000058317	Ube2e2	BC016265	ubiquitin-conjugating enzyme E2E 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-44828923-4	chr18	44828810	44829010	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001163013, exon 1 of 30)	exon (NM_001163013, exon 1 of 30)	245.0	NM_001163013	240255.0	Mm.244482	NM_001163013	ENSMUSG00000034653	Ythdc2	3010002F02Rik|BC037178	YTH domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-79509116-4	chr14	79509008	79509208	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007920, intron 1 of 8)	intron (NM_007920, intron 1 of 8)	-6566.0	NM_001286412	13709.0	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-119364293-2	chr13	119364193	119364393	+	836.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001308506, intron 12 of 16)	Lx8|LINE|L1	44718.0	NM_008710	18115.0	Mm.132584	NM_008710	ENSMUSG00000116207	Nnt	4930423F13Rik|AI323702|BB168308	nicotinamide nucleotide transhydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167694283-19	chr2	167694363	167694563	+	867.5912480000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015500, intron 1 of 1)	intron (NR_015500, intron 1 of 1)	3286.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-88459693-4	chr13	88459595	88459795	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Zaphod|DNA|hAT-Tip100	-361777.0	NM_010103	13612.0	Mm.125580	NM_010103	ENSMUSG00000034488	Edil3	Del-1|Del1|Sox2-cre|Sox2Cre|Tg(Sox2-cre)1Amc	EGF-like repeats and discoidin I-like domains 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-69401401-2	chr17	69401301	69401501	+	778.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15046.0	NR_026848	77533.0	Mm.266592	NR_026848		C030034I22Rik	-	RIKEN cDNA C030034I22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-38483712-4	chr5	38483619	38483819	+	910.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001012363)	promoter-TSS (NM_001012363)	-334.0	NM_001012363	117591.0	Mm.260137	NM_145559	ENSMUSG00000005107	Slc2a9	Glut9|SLC2A9B|SLC2a9A	solute carrier family 2 (facilitated glucose transporter), member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-25281655-4	chr12	25281552	25281752	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	152478.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-19416647-6	chr14	19416559	19416759	+	970.507935	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GSAT_MM|Satellite|Satellite	185928.0	NM_001024706	432825.0	Mm.327147	NM_001024706	ENSMUSG00000095024	Gm5458	EG432825	predicted gene 5458	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-41044076-4	chr8	41043971	41044171	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005863, intron 5 of 13)	L1MB1|LINE|L1	-2140.0	NM_001005865	102103.0	Mm.149438	NM_001005863	ENSMUSG00000045636	Mtus1	AI481402|ATBP135|Atip1|B430010I23Rik|B430305I03Rik|C85752|Cctsg1-440|MD44|MTSG1|mKIAA1288	mitochondrial tumor suppressor 1	protein-coding	5.37144007445126	5.44264772254822	5.04051192132411	5.58596793235122	4.27449655461808	5.19188786966654	5.84305995612246	5.00912786131212	-0.223027500547065	0.522942521105497	0.947836760490745
Merged-chr17-71267353-2	chr17	71267253	71267453	+	636.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357338, intron 4 of 7)	intron (NM_001357338, intron 4 of 7)	43658.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-38480958-2	chr5	38480968	38481168	+	816.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001102414)	promoter-TSS (NM_001102414)	-762.0	NM_001102415	117591.0	Mm.260137	NM_145559	ENSMUSG00000005107	Slc2a9	Glut9|SLC2A9B|SLC2a9A	solute carrier family 2 (facilitated glucose transporter), member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-104092957-4	chr3	104092855	104093055	+	916.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133853, intron 3 of 21)	intron (NM_133853, intron 3 of 21)	-124639.0	NR_030676	100125931.0	Mm.400392	NR_030676	ENSMUSG00000089998	Phtf1os	A130049A11Rik	putative homeodomain transcription factor 1, opposite strand	ncRNA	2.56552608063658	3.44916609588889	2.13131693564211	2.58411751230657	3.38148652707243	4.3249104203883	2.53379425543525	3.79009047721759	1.42623585447315	0.0359425872332204	0.268629045862237
Merged-chr8-11323348-3	chr8	11323250	11323450	+	867.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009932, intron 3 of 47)	intron (NM_009932, intron 3 of 47)	-10524.0	NM_009931	12826.0	Mm.738	NM_009931	ENSMUSG00000031502	Col4a1	Bru|Col4a-1|Raw|Svc	collagen, type IV, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-62781504-2	chr4	62781404	62781604	+	912.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	107530.0	NM_001310706	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-78315899-4	chr17	78315818	78316018	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015800, intron 7 of 16)	intron (NM_015800, intron 7 of 16)	102234.0	NM_001285949	225020.0	Mm.236835	NM_199448	ENSMUSG00000056121	Fez2	9030616F16|D17Ertd315e	fasciculation and elongation protein zeta 2 (zygin II)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55887983-4	chr19	55887893	55888093	+	815.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_138565, intron 4 of 15)	intron (NR_138565, intron 4 of 15)	-7328.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-90595147-2	chr5	90595025	90595225	+	560.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252661, intron 13 of 13)	intron (NM_001252661, intron 13 of 13)	33916.0	NM_001252661	622307.0	Mm.389654	NM_001252661	ENSMUSG00000070690	5830473C10Rik	Arg|Gm17754	RIKEN cDNA 5830473C10 gene	protein-coding	0.733738087189544	0.296921723542564	1.20088039353303	0.277438036762753	0.265088100699	0.299352764269478	1.48310174131734	0.278945051737929	0.155745688281865	0.935502308419154	0.998431161219273
Merged-chr15-99771977-3	chr15	99771875	99772075	+	721.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028015, intron 1 of 9)	CpG	540.0	NM_028015	71949.0	Mm.390821	NM_028015	ENSMUSG00000023021	Cers5	2310081H14Rik|AU045339|AW544927|Lass5|Trh4	ceramide synthase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-36237237-3	chr2	36237178	36237378	+	793.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008969, exon 3 of 11)	exon (NM_008969, exon 3 of 11)	6852.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55688362-2	chr19	55688233	55688433	+	610.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045318, intron 2 of 3)	intron (NR_045318, intron 2 of 3)	13871.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	0.480883801507365	2.05125075255704	1.40882518531117	0.503628372300092	0.697447285960167	0.537144791917847	1.42453845428417	0.505961692885787	-1.55236835279118	0.339253320367864	0.840058063657189
Merged-chr16-77444209-4	chr16	77444117	77444317	+	813.891663	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015543, intron 2 of 4)	intron (NR_015543, intron 2 of 4)	114889.0	NR_015543	77994.0	Mm.394688	NR_015543	ENSMUSG00000090386	Mir99ahg	2810055G20Rik|D730043B02Rik	Mir99a and Mirlet7c-1 host gene (non-protein coding)	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-95843865-2	chr13	95843771	95843971	+	577.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027711, intron 1 of 35)	intron (NM_027711, intron 1 of 35)	48051.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	0.531442813416378	0.970020390866116	1.59014436291919	0.546193835958668	0.533656943009838	0.978939217727091	1.21403041939147	0.903867339350844	-0.310276961543725	0.846458228120435	0.998431161219273
Merged-chr9-118860074-1	chr9	118859974	118860174	+	545.0	f1_c57bl6.idr	intron (NM_001113514, intron 9 of 13)	intron (NM_001113514, intron 9 of 13)	-66462.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	-1.32440223303897	-1.29339468673833	-0.717877708899544	-1.31276353204239	-1.32392690786997	-1.29109028300231	-1.30162128075409	-1.31119997543009	-2.49510383040271	0.470258445164311	1
Merged-chr18-56819996-4	chr18	56819903	56820103	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177115, intron 1 of 4)	intron (NM_177115, intron 1 of 4)	105545.0	NM_177115	320253.0	Mm.312623	NM_177115	ENSMUSG00000032656	March3	6330411I15Rik|A530081L18Rik|AI843639|MARCH-III	membrane-associated ring finger (C3HC4) 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-156029254-1	chr1	156029154	156029354	+	668.0	f1_c57bl6.idr	intron (NM_144791, intron 4 of 6)	intron (NM_144791, intron 4 of 6)	5563.0	NM_001160019	208263.0	Mm.211654	NM_144791	ENSMUSG00000026466	Tor1aip1	LAP1|Lap1B	torsin A interacting protein 1	protein-coding	1.65331629817659	1.36046480697253	1.43506962044359	0.792373115651143	0.778208937188915	1.37152617259834	1.17742044392338	1.14190817059248	-0.90189891329867	0.510532207307996	0.94512318675548
Merged-chr17-26781533-2	chr17	26781433	26781633	+	842.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_172149, intron 1 of 5)	intron (NM_172149, intron 1 of 5)	454.0	NM_172149	224630.0	Mm.21795	NM_172149	ENSMUSG00000024191	Bnip1	2010005M06Rik|5930429G21Rik|Sec20	BCL2/adenovirus E1B interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98785239-2	chr11	98785139	98785339	+	582.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9862.0	NM_145434	217166.0	Mm.390397	NM_145434	ENSMUSG00000020889	Nr1d1	A530070C09Rik|R75201	nuclear receptor subfamily 1, group D, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-34472060-2	chr1	34471960	34472160	+	630.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_011206, intron 11 of 14)	intron (NM_011206, intron 11 of 14)	12314.0	NM_011206	19253.0	Mm.361	NM_011206	ENSMUSG00000026126	Ptpn18	FLP1|HSCF|PTP-HSCF|PTP-K1|Ptpk1	protein tyrosine phosphatase, non-receptor type 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124353761-5	chr5	124353713	124353913	+	855.2899779999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013812, intron 1 of 3)	CpG	815.0	NM_013812	13445.0	Mm.391838	NM_013812	ENSMUSG00000029394	Cdk2ap1	Apc10|Cdkap1|DORC1|Doc1|ST19|doc-1|p12	CDK2 (cyclin-dependent kinase 2)-associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-134414705-4	chr1	134414589	134414789	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001306069)	promoter-TSS (NM_001306069)	-689.0	NM_028320	72674.0	Mm.259976	NM_028320	ENSMUSG00000026457	Adipor1	2810031L11Rik|ACDCR1|CGI-45|Paqr1	adiponectin receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-106984210-2	chr1	106984113	106984313	+	975.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172852, intron 3 of 7)	intron (NM_172852, intron 3 of 7)	3229.0	NM_172852	241196.0	Mm.110886	NM_172852	ENSMUSG00000048775	Serpinb13	5430417G24|HUR7|HURPIN|PI13|headpin	serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), member 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-127294985-1	chr3	127294885	127295085	+	764.0	f0_c57.idr	intron (NM_001327938, intron 1 of 47)	intron (NM_001327938, intron 1 of 47)	114073.0	NM_001327939	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	3.12309945788878	2.18180660259696	1.45981150699084	2.45251474725523	2.7087660144124	2.7450900253517	2.54326537656606	2.46513911539992	0.319078366282057	0.706178495849246	0.998431161219273
Merged-chr2-27704045-3	chr2	27703971	27704171	+	677.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011305, intron 1 of 9)	intron (NM_011305, intron 1 of 9)	-5221.0	NM_001290481	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-99100097-2	chr11	99099997	99100197	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J2|LTR|ERVL-MaLR	-10791.0	NM_172564	217169.0	Mm.262067	NM_172564	ENSMUSG00000017607	Tns4	9930017A07Rik|AA589547|AU016405|Cten	tensin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-118126958-2	chr7	118126858	118127058	+	797.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019419, intron 2 of 5)	intron (NM_019419, intron 2 of 5)	2667.0	NM_019419	54208.0	Mm.29924	NM_019419	ENSMUSG00000030654	Arl6ip1	AIP-6|AL022945|ARMER|AU042858|Aip-1|Arl6ip|C85138|mKIAA0069	ADP-ribosylation factor-like 6 interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-77874474-4	chr15	77874378	77874578	+	901.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32303.0	NM_022410	17886.0	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-107676996-4	chr13	107676906	107677106	+	915.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10391.0	NR_045900	72257.0	Mm.234155	NR_045900	ENSMUSG00000102000	1700006H21Rik	-	RIKEN cDNA 1700006H21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-67891949-2	chr5	67891857	67892057	+	782.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	A-rich|Low_complexity|Low_complexity	-44526.0	NM_001038999	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	-1.50561175621786	-1.47331375025452	-1.02203377115094	-1.49110398925286	-1.50334449591826	-1.47119716082604	-1.48086985756939	-1.48966786617048	-2.07776723614574	0.550394407909386	1
Merged-chr10-81184717-2	chr10	81184617	81184817	+	928.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001190473, intron 2 of 8)	intron (NM_001190473, intron 2 of 8)	799.0	NM_007828	13144.0	Mm.10294	NM_007828	ENSMUSG00000034974	Dapk3	ZIPK|dlk	death-associated protein kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120201672-2	chr11	120201572	120201772	+	596.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur2|SINE|Alu	-11816.0	NR_030682	100042332.0	Mm.269766	NR_030682		2810410L24Rik	-	RIKEN cDNA 2810410L24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-74411669-3	chr16	74411574	74411774	+	735.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_175549, exon 1 of 28)	5' UTR (NM_175549, exon 1 of 28)	151.0	NM_001358494	268902.0	Mm.171736	NM_175549	ENSMUSG00000052516	Robo2	2600013A04Rik|9430089E08Rik|BB097918|D230004I22Rik|mKIAA1568	roundabout guidance receptor 2	protein-coding	0.649513340244878	2.24073372479027	0.948830335988162	0.445949343950711	0.423075036614475	0.485121276747185	1.76975739625325	0.448699086361085	-1.08291167919247	0.501733742045977	0.938443375140454
Merged-chr19-60962829-2	chr19	60962724	60962924	+	677.25	f0_balb.idr|f1_c57bl6.idr	intron (NM_018869, intron 1 of 15)	MTEb|LTR|ERVL-MaLR	73075.0	NM_018869	14773.0	Mm.279400	NM_018869	ENSMUSG00000003228	Grk5	Gprk5	G protein-coupled receptor kinase 5	protein-coding	0.504107707031289	1.02487580438224	0.214874434962282	0.208259630810375	0.368401719799365	1.14432156421187	0.216754440534739	0.209419599722156	0.107233710768391	0.955124918780935	1
Merged-chr6-47739894-1	chr6	47739794	47739994	+	598.0	f0_c57.idr	Intergenic	4.5SRNA|scRNA|scRNA	4337.0	NR_002841	19799.0		NR_002841		Rn4.5s	-	4.5S RNA	rRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-36855803-2	chr6	36855703	36855903	+	767.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347104, intron 30 of 32)	Lx4B|LINE|L1	-45624.0	NM_008973	19242.0	Mm.279690	NM_008973	ENSMUSG00000029838	Ptn	HARP|HB-GAM|HBBM|HBBN|HBGF-8|HBNF|OSF|Osf-1|Osf1	pleiotrophin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-149955145-4	chr4	149955026	149955226	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029035)	promoter-TSS (NM_029035)	-120.0	NM_029035	74646.0	Mm.30	NM_029035	ENSMUSG00000039911	Spsb1	1110014L01Rik|4930422J18Rik|AI596360|AI854583|SSB-1|SSB1	splA/ryanodine receptor domain and SOCS box containing 1	protein-coding	4.87167989580803	4.66224035236287	4.46288939161826	4.90177786644661	4.67873053759556	4.74546218106159	4.2599307921375	5.02489083374849	-0.0417456985207059	0.906514395034414	0.998431161219273
Merged-chr7-101302022-4	chr7	101301902	101302102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001111111)	promoter-TSS (NM_001111111)	86.0	NM_001111111	73683.0	Mm.275744	NM_001111111	ENSMUSG00000047767	Atg16l2	2410118P20Rik	autophagy related 16-like 2 (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-138195178-4	chr5	138195048	138195248	+	981.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177878, exon 1 of 1)	exon (NM_177878, exon 1 of 1)	834.0	NM_177878	330216.0	Mm.19719	NM_177878	ENSMUSG00000049285	Mblac1	-	metallo-beta-lactamase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-54712175-4	chr14	54712075	54712275	+	747.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207131)	promoter-TSS (NM_207131)	-1.0	NM_207131	110794.0	Mm.236223	NM_207131	ENSMUSG00000052435	Cebpe	C/EBPe|C/EBPepsilon|CRP1|Gm294	CCAAT/enhancer binding protein (C/EBP), epsilon	protein-coding	2.0629097371258	1.02717493721163	2.0786865766001	1.2115262746088	2.08178803743687	1.03193931756462	2.09674447744943	1.21685591787466	0.0405502230875758	0.973807099760454	0.998431161219273
Merged-chr14-77783434-3	chr14	77783338	77783538	+	591.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15530.0	NM_001033440	380920.0	Mm.297771	NM_001033440	ENSMUSG00000075512	Gm1587	-	predicted gene 1587	protein-coding	1.94013067027369	2.0879657356159	1.90809301051674	1.85318886880455	1.54604912967538	1.36465456336675	1.66831598585657	1.0900370841631	-1.70500710823991	0.118039371174988	0.539039472985604
Merged-chr5-134519984-2	chr5	134519909	134520109	+	922.5833130000001	f0_balb.idr|f0_c57.idr	intron (NM_001039162, intron 3 of 15)	MTD|LTR|ERVL-MaLR	32425.0	NM_001039162	269713.0	Mm.255138	NM_009990	ENSMUSG00000063146	Clip2	B230327O20|CLIP-115|Clip1|Cyln2|WSCR4|mKIAA0291|wbscr4	CAP-GLY domain containing linker protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125279951-4	chr6	125279857	125280057	+	966.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009446, intron 4 of 4)	intron (NM_009446, intron 4 of 4)	6124.0	NM_009446	22144.0	Mm.270295	NM_009446	ENSMUSG00000067702	Tuba3a	AI528779|M[a]3|Tuba3	tubulin, alpha 3A	protein-coding	1.53253211925138	0.561264542316758	0.550825833759635	0.542683006954327	0.840102051590276	0.783019517785553	1.06768687389357	1.25032542360826	0.421672882309937	0.793755830473556	0.998431161219273
Merged-chr15-99817503-4	chr15	99817394	99817594	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113545, intron 4 of 10)	CT-rich|Low_complexity|Low_complexity	2655.0	NM_023063	65970.0	Mm.33207	NM_023063	ENSMUSG00000023022	Lima1	Eplin	LIM domain and actin binding 1	protein-coding	4.31188568687856	4.90182467316368	4.71961307665279	4.48138092029052	3.91761761529975	3.87876766671418	2.96718824632271	3.12891899468209	-1.44420329892711	0.00156085748157702	0.0278954837099717
Merged-chr2-6717929-2	chr2	6717829	6718029	+	777.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110232, intron 4 of 15)	intron (NM_001110232, intron 4 of 15)	3733.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-106957845-1	chr1	106957745	106957945	+	734.5	f0_balb.idr	TTS (NM_001199213)	TTS (NM_001199213)	18888.0	NM_001199213	71869.0	Mm.321740	NM_027971	ENSMUSG00000059956	Serpinb12	2300003F07Rik|4833409F13Rik	serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), member 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-47394269-2	chr19	47394169	47394369	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008018, intron 3 of 14)	intron (NM_008018, intron 3 of 14)	70142.0	NM_001164717	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-72822622-3	chr5	72822522	72822722	+	928.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013689, intron 3 of 17)	intron (NM_013689, intron 3 of 17)	45826.0	NM_001113461	21682.0	Mm.319581	NM_013689	ENSMUSG00000029217	Tec	-	tec protein tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90456535-2	chr2	90456435	90456635	+	961.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 10 of 23)	MIRb|SINE|MIR	22639.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-44548147-1	chr12	44548047	44548247	+	730.0	f0_balb.idr	intron (NM_001146031, intron 10 of 27)	intron (NM_001146031, intron 10 of 27)	219262.0	NM_001146031	319504.0	Mm.208439	NM_176930	ENSMUSG00000020598	Nrcam	Bravo|C030017F07Rik|C130076O07Rik|mKIAA0343	neuronal cell adhesion molecule	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126538249-2	chr8	126538149	126538349	+	613.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55187.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129032862-4	chr4	129032771	129032971	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25400.0	NM_029219	75234.0	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-99571165-4	chr5	99571065	99571265	+	985.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 1 of 3)	intron (NR_030692, intron 1 of 3)	157895.0	NR_030692	319818.0	Mm.295233	NR_030692	ENSMUSG00000089809	A930011G23Rik	-	RIKEN cDNA A930011G23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-20319493-2	chr14	20319393	20319593	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_027475)	TTS (NM_027475)	24803.0	NR_153364	67725.0	Mm.317636	NM_026341	ENSMUSG00000021809	Nudt13	4933433B15Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32963662-2	chr2	32963562	32963762	+	761.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_002898)	TTS (NR_002898)	361.0	NR_002898	104367.0	Mm.250030	NR_002898	ENSMUSG00000065124	Snora65	MBII-351|Rnu65	small nucleolar RNA, H/ACA box 65	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-105709707-4	chr3	105709608	105709808	+	930.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163356, intron 1 of 1)	intron (NM_001163356, intron 1 of 1)	4250.0	NM_001163356	109050.0	Mm.212591	NM_175398	ENSMUSG00000048458	Fam212b	6530418L21Rik|inka2	family with sequence similarity 212, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-75740771-4	chr18	75740667	75740867	+	842.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43071.0	NM_201354	269037.0	Mm.36745	NM_201354	ENSMUSG00000052928	Ctif	Gm672	CBP80/20-dependent translation initiation factor	protein-coding	3.25845203298618	2.77724986817553	1.82213461450656	2.71760445631091	2.075715099816	3.12981345723729	2.82061691024326	3.60896388096802	0.495161103640367	0.516803540141243	0.947641799425091
Merged-chr14-17912332-2	chr14	17912232	17912432	+	592.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113417, intron 2 of 9)	intron (NM_001113417, intron 2 of 9)	-69312.0	NM_009380	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-123236128-2	chr3	123236033	123236233	+	698.0	f0_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080451)	promoter-TSS (NM_080451)	16.0	NM_080451	118449.0	Mm.34359	NM_080451	ENSMUSG00000050315	Synpo2	1110069I04Rik|2310068J10Rik|9530006G20Rik|AI848603|Myo	synaptopodin 2	protein-coding	1.25562859044761	2.02884676532979	1.63600970931465	1.89213719634503	1.26492635171703	0.979529517786938	1.36251004677271	1.32316117193503	-1.81488375265119	0.125743545736094	0.555748180896976
Merged-chr4-143119088-4	chr4	143119006	143119206	+	882.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081355, intron 8 of 9)	intron (NM_001081355, intron 8 of 9)	17056.0	NR_105988	102465618.0		NR_105988	ENSMUSG00000106597	Mir7021	mmu-mir-7021	microRNA 7021	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-151035744-2	chr2	151035644	151035844	+	568.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026086, intron 1 of 1)	ID_B1|SINE|B4	3635.0	NM_026086	67311.0	Mm.480682	NM_026086	ENSMUSG00000053916	Nanp	1600031M04Rik|Hdhd4	N-acetylneuraminic acid phosphatase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-152210386-4	chr3	152210288	152210488	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355372)	promoter-TSS (NM_001355372)	-34.0	NM_001355369	51886.0	Mm.278922	NM_057172	ENSMUSG00000028034	Fubp1	9530027K12Rik|D3Ertd330e|FBP|Fubp|Fubp4	far upstream element (FUSE) binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-31425710-2	chr16	31425610	31425810	+	553.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175177, intron 1 of 6)	intron (NM_175177, intron 1 of 6)	-3043.0	NM_001122683	71911.0	Mm.293470	NM_175177	ENSMUSG00000046598	Bdh1	2310032J20Rik|AI327223|Bdh	3-hydroxybutyrate dehydrogenase, type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-97765409-4	chr7	97765329	97765529	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23112.0	NM_001357365	18479.0	Mm.260227	NM_011035	ENSMUSG00000030774	Pak1	AW045634|PAK-1|Paka	p21 (RAC1) activated kinase 1	protein-coding	-0.991597071560028	-1.11266276692436	-1.12372915630895	-1.13234486067054	-1.13506748179545	-1.11026463418018	-1.12122396832063	-0.590291635890923	1.70329920231503	0.601976331032042	1
Merged-chr7-98818042-2	chr7	98817942	98818142	+	555.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17070.0	NM_001285794	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-97725740-2	chr15	97725640	97725840	+	864.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001168693, intron 2 of 9)	intron (NM_001168693, intron 2 of 9)	-4590.0	NM_008902	19011.0	Mm.1001	NM_008902	ENSMUSG00000022468	Endou	Pp11r|Tcl-30	endonuclease, polyU-specific	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31662192-4	chr14	31662102	31662302	+	865.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_025295, exon 2 of 4)	exon (NM_025295, exon 2 of 4)	21145.0	NM_025295	26363.0	Mm.282679	NM_025295	ENSMUSG00000021900	Btd	-	biotinidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45635405-4	chr7	45635316	45635516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_152217)	TTS (NR_152217)	3342.0	NR_152217	100126243.0	Mm.440600	NR_152217	ENSMUSG00000110357	A030001D20Rik	1110025D03Rik	RIKEN cDNA A030001D20 gene	ncRNA	5.94575822251886	6.56704110019481	6.04313670894603	6.30590378824016	6.00104615168544	6.53930609288587	6.32224006425585	5.56190620563409	-0.0938791190548842	0.712100773554946	0.998431161219273
Merged-chr8-116994514-2	chr8	116994414	116994614	+	645.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1065.0	NM_026572	68133.0	Mm.258462	NM_026572	ENSMUSG00000034424	Gcsh	1100001L02Rik|5730591C18Rik	glycine cleavage system protein H (aminomethyl carrier)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-113573320-3	chr2	113573195	113573395	+	691.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285459, intron 6 of 16)	intron (NM_001285459, intron 6 of 16)	-111795.0	NM_001287818	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-54053645-5	chr5	54053593	54053793	+	997.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081103, intron 2 of 11)	intron (NM_001081103, intron 2 of 11)	55170.0	NM_001081103	116873.0	Mm.265985	NM_054083	ENSMUSG00000039156	Stim2	-	stromal interaction molecule 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-104750769-3	chr2	104750668	104750868	+	885.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-7967.0	NM_144804	211896.0	Mm.288805	NM_144804	ENSMUSG00000027173	Depdc7	AV216087	DEP domain containing 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-63277569-1	chr4	63277469	63277669	+	1000.0	f1_c57bl6.idr	intron (NM_025685, intron 18 of 60)	intron (NM_025685, intron 18 of 60)	20718.0	NR_030477	735262.0		NR_030477	ENSMUSG00000070102	Mir455	Mirn455|mir-455|mmu-mir-455	microRNA 455	ncRNA	1.14003464145552	1.3046860046441	1.69879727109231	1.06773249389542	0.682359429224421	0.726074745101371	1.71543757856673	0.700045031526259	-1.01953963353061	0.490329864162079	0.934345795476137
Merged-chr9-57862056-4	chr9	57861945	57862145	+	933.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27811.0	NM_019689	56380.0	Mm.425588	NM_019689	ENSMUSG00000004661	Arid3b	Bdp|Dri2	AT rich interactive domain 3B (BRIGHT-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-39198213-5	chr15	39198157	39198357	+	796.366638	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001256382)	promoter-TSS (NM_001256382)	-29.0	NM_001256382	116838.0	Mm.309296	NM_053271	ENSMUSG00000037386	Rims2	2810036I15Rik|AW048769|RIM2|Rab3ip2|Rim2(+40A)|Rim2(+44A)|Rim2(+4A)|Serg2|Syt3-rs|mKIAA0751	regulating synaptic membrane exocytosis 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96277543-2	chr3	96277443	96277643	+	600.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7843.0	NM_175666	319189.0	Mm.297655	NM_175666	ENSMUSG00000105827	Hist2h2bb	H2b-616	histone cluster 2, H2bb	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-29735551-4	chr6	29735465	29735665	+	805.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_176996)	promoter-TSS (NM_176996)	68.0	NM_176996	319757.0	Mm.29279	NM_176996	ENSMUSG00000001761	Smo	E130215L21Rik|Smoh|bnb|smoothened	smoothened, frizzled class receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-132335156-4	chr1	132335059	132335259	+	974.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19034.0	NM_028778	74137.0	Mm.100666	NM_028778	ENSMUSG00000009772	Nuak2	1200013B22Rik|Omphk2|Snark|mKIAA0537	NUAK family, SNF1-like kinase, 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30390902-2	chr2	30390688	30390888	+	627.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1466.0	NM_020329	57170.0	Mm.285167	NM_020329	ENSMUSG00000026856	Dolpp1	0610011H20Rik|AB030189|LSFR2	dolichyl pyrophosphate phosphatase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-67186430-4	chr18	67186338	67186538	+	916.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177137, intron 4 of 11)	intron (NM_177137, intron 4 of 11)	-18921.0	NM_024190	67064.0	Mm.73777	NM_024190	ENSMUSG00000109901	Chmp1b	2810405I11Rik|Chmp1b1	charged multivesicular body protein 1B	protein-coding	4.80871959334618	5.65345808067798	4.72587298408582	2.64368791951584	6.5971704154248	6.32727959773333	4.60697334190728	6.01593870439526	1.42567961090608	0.0761725331885875	0.418588421311453
Merged-chr9-77144325-2	chr9	77144225	77144425	+	566.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027150, intron 7 of 7)	B4A|SINE|B4	-98544.0	NR_136923	26944.0	Mm.23199	NM_012033	ENSMUSG00000032357	Tinag	AI452335|TIN-ag	tubulointerstitial nephritis antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41899093-2	chr19	41899010	41899210	+	761.275024	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2957.0	NM_199447	107094.0	Mm.276044	NM_199447	ENSMUSG00000035049	Rrp12	AA408556|AA536972|mKIAA0690	ribosomal RNA processing 12 homolog (S. cerevisiae)	protein-coding	2.1142326613569	3.01013643966561	1.23843229323655	1.98583235980612	2.2340496355499	1.55802854883474	1.72536228007038	2.69914769694604	-0.248054274427348	0.805132950470979	0.998431161219273
Merged-chr5-59511511-2	chr5	59511411	59511611	+	706.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3_Mus|LINE|L1	474491.0	NR_040683	71057.0	Mm.50817	NR_040682	ENSMUSG00000106013	4933402J10Rik	-	RIKEN cDNA 4933402J10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-150921852-4	chr2	150921744	150921944	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027014, intron 4 of 6)	intron (NM_027014, intron 4 of 6)	12250.0	NM_001163476	69270.0	Mm.271603	NM_027014	ENSMUSG00000027454	Gins1	2810418N01Rik|Gins4|PSF1|mKIAA0186	GINS complex subunit 1 (Psf1 homolog)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-152406267-4	chr2	152406165	152406365	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8219.0	NM_011438	20667.0	Mm.28424	NM_011438	ENSMUSG00000051817	Sox12	2010205A02Rik	SRY (sex determining region Y)-box 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81919824-2	chr15	81919724	81919924	+	702.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030229, intron 2 of 5)	intron (NM_030229, intron 2 of 5)	6389.0	NM_030229	78929.0	Mm.215115	NM_030229	ENSMUSG00000022476	Polr3h	5031409G22Rik|RPC8	polymerase (RNA) III (DNA directed) polypeptide H	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-128611082-4	chr4	128610977	128611177	+	966.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177758)	promoter-TSS (NM_177758)	-979.0	NM_177758	269585.0	Mm.153291	NM_177758	ENSMUSG00000061894	Zscan20	C130001F22|Zfp31|Zkscan20	zinc finger and SCAN domains 20	protein-coding	2.74015540628889	3.40263172583037	2.87522479059701	2.77732096070308	4.63872424053877	5.08978857347943	5.00856025510455	4.55701709337309	2.58879957524476	3.82227171423017e-08	3.82163466894446e-06
Merged-chr8-122463961-4	chr8	122463796	122463996	+	956.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3204.0	NM_013914	30927.0	Mm.103673	NM_013914	ENSMUSG00000006587	Snai3	AI643946|Smuc|Zfp293	snail family zinc finger 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-74591546-1	chr13	74591446	74591646	+	623.0	f1_balb.idr	Intergenic	Intergenic	-48307.0	NM_030711	80898.0	Mm.83526	NM_030711	ENSMUSG00000021583	Erap1	A-LAP|ARTS-1|Arts1|ERAAP|PILSA|PILSAP	endoplasmic reticulum aminopeptidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6976244-4	chr19	6976154	6976354	+	879.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008889, intron 1 of 3)	intron (NM_008889, intron 1 of 3)	1206.0	NM_008889	18938.0	Mm.140	NM_008889	ENSMUSG00000056612	Ppp1r14b	AOM172|PHI-1|PLCB3N|Png	protein phosphatase 1, regulatory (inhibitor) subunit 14B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-51936332-3	chr11	51936231	51936431	+	798.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31300.0	NM_029976	52626.0	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-90256460-2	chr16	90256360	90256560	+	588.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346799, intron 7 of 19)	intron (NM_001346799, intron 7 of 19)	28026.0	NM_001346799	224432.0	Mm.439811	NM_178923	ENSMUSG00000022983	Scaf4	AA517739|Sfrs15|Sra4|Srsf15	SR-related CTD-associated factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45150125-1	chr7	45150025	45150225	+	605.0	f1_c57bl6.idr	intron (NM_145954, intron 1 of 16)	intron (NM_145954, intron 1 of 16)	-4178.0	NM_029406	68845.0	Mm.181689	NM_029406	ENSMUSG00000003423	Pih1d1	1110061L23Rik|4933413A04Rik|Nop17	PIH1 domain containing 1	protein-coding	0.0974803224925728	1.16427349914593	0.115972684958616	0.307844958147258	1.02842643412017	0.12673909823117	0.117924985255845	0.110299396524773	-0.4547127963132	0.825968898650128	1
Merged-chr12-87442114-2	chr12	87442014	87442214	+	759.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001013372)	TTS (NM_001013372)	1725.0	NM_001102565	211064.0	Mm.486235	NM_001102565	ENSMUSG00000079036	Alkbh1	2700073G19Rik|Abh|Alkbh|alkB|hABH	alkB homolog 1, histone H2A dioxygenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-33213210-2	chr5	33213110	33213310	+	559.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_133903)	TTS (NM_133903)	5028.0	NM_133903	100689.0	Mm.34694	NM_133903	ENSMUSG00000037379	Spon2	2310045I24Rik|AI504350|M-spondin|Mindin|Mspondin	spondin 2, extracellular matrix protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-73129990-2	chr15	73129890	73130090	+	773.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153178, intron 4 of 18)	intron (NM_153178, intron 4 of 18)	39578.0	NM_053068	93696.0	Mm.23095	NM_053068	ENSMUSG00000068391	Chrac1	2410152E03Rik|2810406L04Rik|YCL1	chromatin accessibility complex 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-28928610-2	chr16	28928510	28928710	+	668.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177718, intron 1 of 1)	intron (NM_177718, intron 1 of 1)	1088.0	NM_177718	239796.0	Mm.155887	NM_177718	ENSMUSG00000051065	Mb21d2	1600021P15Rik|A430031N04|C87006	Mab-21 domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166062672-2	chr2	166062572	166062772	+	547.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008679, intron 17 of 22)	intron (NM_008679, intron 17 of 22)	70035.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-70769027-3	chr6	70768937	70769137	+	936.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009075, intron 8 of 8)	intron (NM_009075, intron 8 of 8)	23138.0	NM_009075	19895.0	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150743068-2	chr4	150742968	150743168	+	587.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-90894.0	NM_173774	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-119079465-4	chr10	119079350	119079550	+	824.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13455.0	NR_045348	73400.0	Mm.416864	NR_045348	ENSMUSG00000100681	1700064J06Rik	-	RIKEN cDNA 1700064J06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-121673280-4	chr11	121673206	121673406	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178664)	promoter-TSS (NM_178664)	-155.0	NM_178664	210004.0	Mm.386847	NM_178664	ENSMUSG00000046605	B3gntl1	6030413G23Rik	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-79433136-4	chr15	79433051	79433251	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359863, intron 2 of 10)	intron (NM_001359863, intron 2 of 10)	8667.0	NM_001289899	27373.0	Mm.30199	NM_013767	ENSMUSG00000022433	Csnk1e	AI426939|AI551861|AW457082|CK1epsilon|CKIe|KC1epsilon|tau	casein kinase 1, epsilon	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-13563783-5	chr12	13563655	13563855	+	730.033325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027706, intron 50 of 51)	intron (NM_027706, intron 50 of 51)	63891.0	NR_136761	102639399.0	Mm.122052	NR_136761	ENSMUSG00000113666	Gm35725	-	predicted gene, 35725	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81845867-4	chr15	81845730	81845930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12496.0	NM_020507	57259.0	Mm.323595	NM_020507	ENSMUSG00000048546	Tob2	2900090N22Rik|4930545K18Rik|AV071822|mKIAA1663	transducer of ERBB2, 2	protein-coding	7.31350839324798	7.445030444932	6.97282321781374	7.42327228883561	6.66529249679531	6.63744745693712	7.54766733632036	7.14346907194331	-0.264619858696025	0.202695926939493	0.688808411556785
Merged-chr11-57645310-4	chr11	57645215	57645415	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134189)	promoter-TSS (NM_134189)	-127.0	NM_134189	171212.0	Mm.271670	NM_134189	ENSMUSG00000020520	Galnt10	AU018154|C330012K04Rik|GalNAc-T10|GalNAc-T9|Galnt9|ppGaNTase	polypeptide N-acetylgalactosaminyltransferase 10	protein-coding	2.19322551624521	2.26781991478094	1.43953626161584	2.61724094611724	1.92639819535886	1.87890984471699	1.2053589342738	1.76238490900903	-1.27458482547038	0.211707069301801	0.700513352863488
Merged-chr3-89093381-3	chr3	89093281	89093481	+	653.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001083807)	promoter-TSS (NM_001083807)	-18.0	NM_028188	72296.0	Mm.27687	NM_028188	ENSMUSG00000041263	Rusc1	2210403N08Rik|AA408288|NESCA	RUN and SH3 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-95717115-2	chr6	95717015	95717215	+	551.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011507, intron 1 of 10)	B4A|SINE|B4	1731.0	NM_011507	20917.0	Mm.371585	NM_011507	ENSMUSG00000061838	Suclg2	AF171077|AW556404|D6Wsu120e|G-SCS|GTPSCS|SCS-betaG	succinate-Coenzyme A ligase, GDP-forming, beta subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-76472219-3	chr12	76472105	76472305	+	693.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27708.0	NR_028520	100041694.0	Mm.259350	NR_028520	ENSMUSG00000073000	Gm10451	-	predicted gene 10451	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-113509553-4	chr13	113509469	113509669	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6725.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-55816017-4	chr4	55815923	55816123	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-283548.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-29382995-4	chr19	29382895	29383095	+	877.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021893, intron 5 of 6)	intron (NM_021893, intron 5 of 6)	15557.0	NM_021893	60533.0	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19578191-4	chr7	19578100	19578300	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022409, intron 2 of 2)	intron (NM_022409, intron 2 of 2)	913.0	NM_022409	63872.0	Mm.23310	NM_022409	ENSMUSG00000011267	Zfp296	2210018A16Rik|Znf296	zinc finger protein 296	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-58559782-3	chr9	58559668	58559868	+	908.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18828.0	NM_133983	102657.0	Mm.5356	NM_133983	ENSMUSG00000035914	Cd276	6030411F23Rik|AU016588|B7RP-2|B7h3	CD276 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-148581128-2	chr6	148581028	148581228	+	845.3333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33181.0	NR_045867	622319.0	Mm.491049	NM_001037912	ENSMUSG00000070995	Gm6313	EG622319	predicted gene 6313	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-59244942-4	chr4	59244836	59245036	+	995.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15115.0	NR_105031	101055769.0	Mm.421401	NR_105031		Gm12596	-	predicted gene 12596	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-88040961-3	chr17	88040888	88041088	+	949.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081034, intron 1 of 22)	intron (NM_001081034, intron 1 of 22)	23944.0	NM_001348248	225055.0	Mm.386857	NM_001081034	ENSMUSG00000005371	Fbxo11	C80048|Jf	F-box protein 11	protein-coding	2.25991396639138	1.26093777651535	1.22210530987523	2.01819039968759	2.46809862507279	3.48034610658381	2.10040874116244	2.29437219198039	2.04006037322972	0.0358969591486356	0.26839949056834
Merged-chr7-79661322-1	chr7	79661222	79661422	+	689.0	f1_c57bl6.idr	intron (NM_029835, intron 1 of 21)	intron (NM_029835, intron 1 of 21)	1126.0	NM_029835	77011.0	Mm.28132	NM_029835	ENSMUSG00000046591	Ticrr	5730590G19Rik|BC028450|Lrrk1	TOPBP1-interacting checkpoint and replication regulator	protein-coding	1.72782404106977	2.07140940221421	2.2111568316436	1.94084387866525	1.09906315135015	1.17355634618872	2.22937404133075	1.95113587090073	-0.77316696706028	0.486460354204809	0.932503166794264
Merged-chr3-27711306-4	chr3	27711208	27711408	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173182)	promoter-TSS (NM_173182)	-856.0	NM_173182	72007.0	Mm.38832	NM_173182	ENSMUSG00000039286	Fndc3b	1600019O04Rik|AW550168|Fad104|mKIAA4164	fibronectin type III domain containing 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-44468554-4	chr11	44468466	44468666	+	886.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024475, intron 1 of 10)	intron (NM_024475, intron 1 of 10)	1982.0	NM_024475	79560.0	Mm.338784	NM_024475	ENSMUSG00000041231	Ublcp1	4930527B16Rik|8430435I17Rik|BC002236	ubiquitin-like domain containing CTD phosphatase 1	protein-coding	0.65836570948832	1.10653325280322	1.05482692052144	3.03589524688046	0.666363388454131	1.11779959756797	1.06648699125606	3.0530782462783	0.0287851682904679	0.988330211307498	0.998431161219273
Merged-chr11-48775620-2	chr11	48775520	48775720	+	739.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24740.0	NM_008143	14694.0	Mm.5305	NM_008143	ENSMUSG00000020372	Rack1	AL033335|GB-like|Gnb2-rs1|Gnb2l1|p205	receptor for activated C kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-69289843-4	chr9	69289721	69289921	+	914.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289916)	promoter-TSS (NM_001289916)	-20.0	NM_001289916	19883.0	Mm.378450	NM_013646	ENSMUSG00000032238	Rora	9530021D13Rik|Nr1f1|ROR1|ROR2|ROR3|nmf267|sg|staggerer|tmgc26	RAR-related orphan receptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-123633968-3	chr4	123633869	123634069	+	812.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199137, intron 1 of 92)	intron (NM_001199137, intron 1 of 92)	17549.0	NR_105824	102465214.0		NR_105824	ENSMUSG00000099005	Mir6398	Gm27657|mmu-mir-6398	microRNA 6398	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70439691-4	chr8	70439582	70439782	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001004062)	promoter-TSS (NM_001004062)	-109.0	NM_001004062	382056.0	Mm.227767	NM_001004062	ENSMUSG00000003575	Crtc1	AI413414|Mect1|R74955|TORC1|mKIAA0616	CREB regulated transcription coactivator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-58481374-4	chr16	58481255	58481455	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357433, intron 6 of 10)	intron (NM_001357433, intron 6 of 10)	42071.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-74020706-4	chr17	74020601	74020801	+	945.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053188, intron 4 of 4)	intron (NM_053188, intron 4 of 4)	27215.0	NM_053188	94224.0	Mm.38933	NM_053188	ENSMUSG00000038541	Srd5a2	5ART2|S5AR 2	steroid 5 alpha-reductase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100935579-2	chr11	100935479	100935679	+	820.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_213660, intron 1 of 23)	intron (NM_213660, intron 1 of 23)	3961.0	NM_213660	20848.0	Mm.249934	NM_011486	ENSMUSG00000004040	Stat3	1110034C02Rik|AW109958|Aprf	signal transducer and activator of transcription 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-80729540-4	chr18	80729457	80729657	+	879.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16486.0	NM_001164110	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-29489776-2	chr19	29489676	29489876	+	757.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32211.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-62496292-2	chr4	62496192	62496392	+	770.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_138653, exon 6 of 7)	exon (NM_138653, exon 6 of 7)	5908.0	NM_024257	72748.0	Mm.41506	NM_024257	ENSMUSG00000038422	Hdhd3	2810435D12Rik	haloacid dehalogenase-like hydrolase domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-54016356-1	chr10	54016256	54016456	+	617.0	f0_balb.idr	intron (NM_008548, intron 4 of 12)	intron (NM_008548, intron 4 of 12)	59440.0	NM_008548	17155.0	Mm.117294	NM_008548	ENSMUSG00000003746	Man1a	Man1a1|PCR1	mannosidase 1, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118702789-2	chr9	118702699	118702899	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 15 of 27)	intron (NM_133721, intron 15 of 27)	-8893.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	1.56629490053109	0.764240709452889	0.750378333099972	1.75252939929773	1.66055560379176	0.999447176970228	0.968979469276305	0.942417863300493	-0.417332121943686	0.768742436595448	0.998431161219273
Merged-chr15-86131042-1	chr15	86130942	86131142	+	540.0	f1_c57bl6.idr	intron (NM_172611, intron 14 of 18)	intron (NM_172611, intron 14 of 18)	-54686.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78175769-2	chr15	78175669	78175869	+	723.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1661.0	NM_025931	67042.0	Mm.30191	NM_025931	ENSMUSG00000016637	Ift27	2600013G09Rik|Rabl4	intraflagellar transport 27	protein-coding	-1.8429182434137	-1.8129848525291	-1.82203695700074	-1.54461076807193	-1.84081697472045	-1.81102322372834	-1.81998775896484	-1.82814164409203	-1.43114970378833	0.684630132144154	1
Merged-chr4-53034556-3	chr4	53034500	53034700	+	814.849976	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 49 of 49)	RLTR20A3_MM|LTR|ERVK	22720.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	-0.495321304737524	-0.48184673053326	-0.486247872229456	-0.489652299780165	-0.494476609585621	0.287611097096799	-0.485276066756757	-0.0341328086720208	3.62962394693584	0.171037899092457	1
Merged-chr9-124440422-6	chr9	124440234	124440434	+	904.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16547.0	NR_015516	75135.0	Mm.476814	NR_015516		4930526I15Rik	1600027J15Rik	RIKEN cDNA 4930526I15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6926053-2	chr19	6925953	6926153	+	901.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039494)	promoter-TSS (NM_001039494)	-673.0	NM_001039494	67077.0	Mm.251306	NM_001039494	ENSMUSG00000050623	Catsperz	1700019N12Rik|A430107B04Rik|MLZ-622|Tex40	cation channel sperm associated auxiliary subunit zeta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3784707-2	chr4	3784608	3784808	+	685.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 12 of 12)	intron (NM_001111096, intron 12 of 12)	50947.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	0.192733554481498	-0.305435671961132	-0.310774495893097	-0.314915004914588	-0.320799076292199	-0.304236461279758	0.613050371354171	-0.314190294463523	1.20800986175583	0.637776139204671	1
Merged-chr2-84794139-4	chr2	84794050	84794250	+	883.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTRIS4|LTR|ERV1	-4678.0	NM_019949	56791.0	Mm.38261	NM_019949	ENSMUSG00000027078	Ube2l6	2810489I21Rik|RIG-B|UBCH8|Ubce8|Ubcm8	ubiquitin-conjugating enzyme E2L 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-35393637-4	chr8	35393547	35393747	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	17906.0	NM_177741	244416.0	Mm.247126	NM_177741	ENSMUSG00000046794	Ppp1r3b	6430576E21|AW821953|GL|PTG	protein phosphatase 1, regulatory (inhibitor) subunit 3B	protein-coding	4.91063646971851	4.62189005315158	4.8234224747624	5.01059660490224	4.6681290935057	5.85182926223186	5.40099546143987	5.82891863168182	0.76389253392936	0.0236506256025486	0.201058247033098
Merged-chr9-123936823-4	chr9	123936729	123936929	+	995.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31863.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-68736776-2	chr10	68736676	68736876	+	732.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177794, intron 1 of 5)	intron (NM_177794, intron 1 of 5)	13030.0	NM_177794	327766.0	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-98292484-4	chr12	98292382	98292582	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23847.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-85841587-4	chr8	85841483	85841683	+	953.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028007)	promoter-TSS (NM_028007)	581.0	NM_199446	102093.0	Mm.237296	NM_199446	ENSMUSG00000036879	Phkb	AI463271	phosphorylase kinase beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-111505535-2	chr10	111505435	111505635	+	795.625	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009344)	promoter-TSS (NM_009344)	-751.0	NM_009344	21664.0	Mm.3117	NM_009344	ENSMUSG00000020205	Phlda1	DT1P1B11|TDAG51|Tdag	pleckstrin homology like domain, family A, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-10142859-1	chr2	10142759	10142959	+	979.0	f0_balb.idr	Intergenic	Intergenic	-10684.0	NM_172471	209378.0	Mm.313876	NM_172471	ENSMUSG00000025780	Itih5	4631408O11Rik|5430408M01Rik|E130106B02	inter-alpha (globulin) inhibitor H5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16840090-2	chr7	16839990	16840190	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039878, intron 17 of 17)	intron (NM_001039878, intron 17 of 17)	-2812.0	NM_001252458	101540.0	Mm.1881	NM_178900	ENSMUSG00000041187	Prkd2	AI325941|PKD2	protein kinase D2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-5789410-4	chr11	5789312	5789512	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146309, intron 1 of 12)	intron (NM_001146309, intron 1 of 12)	929.0	NM_013810	13169.0	Mm.256925	NM_013810	ENSMUSG00000020476	Dbnl	Abp1|SH3P7|mAbp1	drebrin-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-24568224-4	chr4	24568124	24568324	+	942.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149739, intron 13 of 24)	intron (NR_149739, intron 13 of 24)	71773.0	NM_199467	212377.0	Mm.120919	NM_199467	ENSMUSG00000045751	Mms22l	F730047E07Rik|Gm134	MMS22-like, DNA repair protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122473187-2	chr8	122473087	122473287	+	719.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033142, intron 1 of 5)	intron (NM_001033142, intron 1 of 5)	2877.0	NM_001033142	68718.0	Mm.34356	NM_001033142	ENSMUSG00000014470	Rnf166	1110031E24Rik|AW555115|Zfp313l	ring finger protein 166	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-78175504-4	chr9	78175410	78175610	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040401)	promoter-TSS (NR_040401)	-404.0	NR_040401	320295.0	Mm.131285	NR_040401	ENSMUSG00000097574	C920006O11Rik	-	RIKEN cDNA C920006O11 gene	ncRNA	3.60647726846506	3.53091301463565	3.83566483677896	4.42680672043369	4.63518554315556	3.55761575264816	4.12750950689609	3.32558172566902	0.167806410896944	0.743741057599453	0.998431161219273
Merged-chr5-65076306-4	chr5	65076207	65076407	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-31261.0	NM_001347355	71778.0	Mm.10281	NM_175174	ENSMUSG00000054920	Klhl5	1300013C10Rik	kelch-like 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-36250850-2	chr8	36250732	36250932	+	949.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1316.0	NM_001081150	244421.0	Mm.324032	NM_001081150	ENSMUSG00000039633	Lonrf1	-	LON peptidase N-terminal domain and ring finger 1	protein-coding	1.39140573713203	0.66850631744265	0.639079937899366	3.13988382156453	1.40806000338389	1.65306116970128	0.645715924982717	0.619422416754947	-1.87229580295808	0.439550176460273	0.909130714404946
Merged-chr9-65578113-6	chr9	65577992	65578192	+	995.785706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153119, intron 1 of 5)	intron (NM_153119, intron 1 of 5)	1995.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	1.71567331790283	1.49966233772996	1.03765085462055	1.81318592045328	2.1504605350635	1.06228588292446	1.46226410961595	2.19316772350601	0.783468382385687	0.509623812870228	0.944722478737442
Merged-chr4-132476439-4	chr4	132476370	132476570	+	877.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-12549.0	NM_026039	67219.0	Mm.45929	NM_026039	ENSMUSG00000066042	Med18	2810046C01Rik	mediator complex subunit 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133928937-6	chr4	133928821	133929021	+	981.2333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	39070.0	NM_016957	15331.0	Mm.319660	NM_016957	ENSMUSG00000003038	Hmgn2	HMG-17|Hmg17	high mobility group nucleosomal binding domain 2	protein-coding	3.88310137773323	4.32854895256949	3.03635182155737	2.64955640809564	4.23812168551996	3.89852860835968	4.55630981227198	3.92926126569137	0.76142454478346	0.152662920410945	0.606640445713354
Merged-chr17-15632163-3	chr17	15632046	15632246	+	698.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045431, intron 1 of 3)	intron (NR_045431, intron 1 of 3)	358.0	NR_045431	71008.0	Mm.399492	NR_045431		4933401D09Rik	-	RIKEN cDNA 4933401D09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-136605990-4	chr1	136605916	136606116	+	764.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18885.0	NM_177643	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-125213246-3	chr10	125213143	125213343	+	871.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	95573.0	NM_001358915	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128377075-5	chr10	128377000	128377200	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172790)	promoter-TSS (NM_172790)	-24.0	NM_172790	237615.0	Mm.440177	NM_172790	ENSMUSG00000014498	Ankrd52	6430544C07|G431002C21Rik	ankyrin repeat domain 52	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-138166255-2	chr1	138166155	138166355	+	772.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001268286, intron 2 of 28)	intron (NM_001268286, intron 2 of 28)	8871.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-31149787-2	chr3	31149687	31149887	+	952.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008770)	promoter-TSS (NM_008770)	-133.0	NM_008770	18417.0	Mm.4425	NM_008770	ENSMUSG00000037625	Cldn11	Claudin-11|Claudin11|Osp|Otm	claudin 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-30515161-3	chr3	30515057	30515257	+	900.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-5482.0	NM_021442	14013.0	Mm.56965	NM_007963	ENSMUSG00000027684	Mecom	D630039M04Rik|Evi-1|Evi1|Jbo|Mds|Mds1|Mds1-Evi1|Prdm3|Znfpr1b1	MDS1 and EVI1 complex locus	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122989272-4	chr5	122989159	122989359	+	879.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045820)	promoter-TSS (NR_045820)	-95.0	NR_045820	109202.0	Mm.30769	NM_175405	ENSMUSG00000056735	A930024E05Rik	-	RIKEN cDNA A930024E05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117358431-4	chr11	117358305	117358505	+	926.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017380, intron 8 of 9)	intron (NM_017380, intron 8 of 9)	26092.0	NM_001113488	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-34005813-4	chr1	34005710	34005910	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276764, intron 3 of 102)	intron (NM_001276764, intron 3 of 102)	-6015.0	NM_133833	13518.0	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-124013435-4	chr9	124013321	124013521	+	802.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8550.0	NM_009914	12771.0	Mm.57050	NM_009914	ENSMUSG00000035448	Ccr3	CC-CKR3|CKR3|Cmkbr1l2|Cmkbr3	chemokine (C-C motif) receptor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-156392972-4	chr2	156392881	156393081	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_024329)	promoter-TSS (NR_024329)	-2.0	NR_024329	347740.0	Mm.324242	NR_024329	ENSMUSG00000102869	2900097C17Rik	1810005K14Rik|4930563C06Rik	RIKEN cDNA 2900097C17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152800877-3	chr1	152800708	152800908	+	674.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010877, intron 1 of 15)	intron (NM_010877, intron 1 of 15)	655.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-22108339-4	chr16	22108263	22108463	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183029, intron 2 of 15)	intron (NM_183029, intron 2 of 15)	54936.0	NM_183029	319765.0	Mm.489442	NM_183029	ENSMUSG00000033581	Igf2bp2	C330012H03Rik|IMP-2|Imp2|Neilsen	insulin-like growth factor 2 mRNA binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-79174219-4	chr3	79174129	79174329	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28354.0	NM_001099624	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	1.14968410060217	0.498212834971541	0.489437354210782	1.04576980525722	1.07798102331993	0.500182782417359	1.09983323547855	0.483817323928512	-0.0361689016233194	0.983635082426444	1
Merged-chr2-30717432-4	chr2	30717326	30717526	+	916.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER115|DNA|hAT-Tip100	-3784.0	NR_037272	100526499.0		NR_037272	ENSMUSG00000093091	Mir3089	mir-3089|mmu-mir-3089	microRNA 3089	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-121421682-4	chr14	121421579	121421779	+	868.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42449.0	NM_145465	223255.0	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120490010-2	chr8	120489910	120490110	+	643.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198671, intron 1 of 15)	intron (NM_198671, intron 1 of 15)	1144.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-100446219-4	chr9	100446133	100446333	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40240.0	NM_001033543	213208.0	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30218452-1	chr7	30218352	30218552	+	652.0	f1_c57bl6.idr	Intergenic	Intergenic	12939.0	NM_001360648	66411.0	Mm.27947	NM_025548	ENSMUSG00000006095	Tbcb	2410007D12Rik|AU041393|CG22|CKAPI|Ckap1	tubulin folding cofactor B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-35496732-3	chr2	35496630	35496830	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35281.0	NM_001145821	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-140764951-2	chr6	140764851	140765051	+	554.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	138066.0	NM_001309436	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85698585-3	chr12	85698486	85698686	+	734.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016767, intron 2 of 2)	intron (NM_016767, intron 2 of 2)	11866.0	NM_016767	53314.0	Mm.6672	NM_016767	ENSMUSG00000034266	Batf	B-ATF|SFA-2	basic leucine zipper transcription factor, ATF-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19802514-2	chr7	19802414	19802614	+	684.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-5705.0	NM_023224	80794.0	Mm.81698	NM_023224	ENSMUSG00000040525	Cblc	2310076I21Rik|2310079L19Rik|Cbl3	Casitas B-lineage lymphoma c	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-29641675-3	chr19	29641570	29641770	+	878.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362131, intron 2 of 14)	intron (NM_001362131, intron 2 of 14)	6745.0	NM_001081213	226090.0	Mm.267131	NM_001081213	ENSMUSG00000046324	Ermp1	D19Ertd410e|D19Wsu12e|Fxna|b2b2633Clo|mKIAA1815	endoplasmic reticulum metallopeptidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-95209558-4	chr4	95209444	95209644	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-157322.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-46266083-2	chr11	46265983	46266183	+	703.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252459, intron 12 of 30)	L1MB7|LINE|L1	30526.0	NM_177075	320116.0	Mm.39600	NM_177075	ENSMUSG00000048721	Fndc9	C030019I05Rik	fibronectin type III domain containing 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-58921261-4	chr2	58921195	58921395	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362394, intron 10 of 13)	L1MA6|LINE|L1	166111.0	NM_029692	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-36071197-2	chr3	36071097	36071297	+	619.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172678, intron 2 of 17)	intron (NM_172678, intron 2 of 17)	5218.0	NM_172678	229211.0	Mm.260997	NM_172678	ENSMUSG00000027710	Acad9	2600017P15Rik|4732402K02|C630012L17Rik|NPD002	acyl-Coenzyme A dehydrogenase family, member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-33717582-3	chr17	33717474	33717674	+	661.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252480, intron 1 of 4)	MIRb|SINE|MIR	1103.0	NM_145486	224703.0	Mm.311439	NM_145486	ENSMUSG00000079557	March2	9530046H09Rik|MARCH-II	membrane-associated ring finger (C3HC4) 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-62971056-4	chr13	62970941	62971141	+	927.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289926, intron 1 of 15)	intron (NM_001289926, intron 1 of 15)	6148.0	NM_001289924	72061.0	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-38010264-4	chr13	38010175	38010375	+	951.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027724, intron 11 of 12)	intron (NM_027724, intron 11 of 12)	-16067.0	NM_001360842	107513.0	Mm.426670	NM_025965	ENSMUSG00000021427	Ssr1	2510001K09Rik|6330400D04|AI159733|AI452176|SSR|TRAPA	signal sequence receptor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-47109964-2	chr4	47109864	47110064	+	879.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172693, intron 3 of 9)	intron (NM_172693, intron 3 of 9)	18011.0	NM_172693	230145.0	Mm.132246	NM_172693	ENSMUSG00000039774	Galnt12	9130206E10|A630062B03Rik	polypeptide N-acetylgalactosaminyltransferase 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45361574-4	chr7	45361463	45361663	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029741, intron 2 of 29)	CpG	-4598.0	NR_015480	50994.0	Mm.389897	NM_016664	ENSMUSG00000091510	Mtag2	MAG	metastasis associated gene 2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-118483216-4	chr7	118483066	118483266	+	695.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8809.0	NM_001033380	319622.0	Mm.323386	NM_001033380	ENSMUSG00000095115	Itpripl2	C130081G24|E030018N11Rik	inositol 1,4,5-triphosphate receptor interacting protein-like 2	protein-coding	0.74201180314599	0.984143541929687	0.668711007020595	0.90664781386501	0.857470380965598	0.505142657134639	0.497810244152473	1.01920189662831	-0.475283583302108	0.763914353394567	1
Merged-chr5-139745979-3	chr5	139745809	139746009	+	776.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-9576.0	NM_174850	231830.0	Mm.240510	NM_174850	ENSMUSG00000036718	Micall2	A930021H16Rik|JRAB|MICAL-L2|mFLJ00139	MICAL-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-114907852-2	chr4	114907752	114907952	+	970.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_008593, exon 1 of 1)	exon (NM_008593, exon 1 of 1)	1046.0	NM_008593	17301.0	Mm.7997	NM_008593	ENSMUSG00000055210	Foxd2	AI426778|Mf2	forkhead box D2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-35047462-4	chr16	35047367	35047567	+	997.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023587, intron 2 of 6)	intron (NM_023587, intron 2 of 6)	25046.0	NM_023587	70757.0	Mm.27286	NM_023587	ENSMUSG00000035376	Hacd2	6330408J20Rik|AI255777|AI481689|Hcad2|Ptplb	3-hydroxyacyl-CoA dehydratase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-34947560-2	chr5	34947460	34947660	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1888.0	NM_173402	71729.0	Mm.196208	NM_173402	ENSMUSG00000029101	Rgs12	1200016K18Rik|4632412M04Rik|AI481290|E130309H11	regulator of G-protein signaling 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-110625880-7	chr7	110625779	110625979	+	943.4761960000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1778.0	NM_009627	11535.0	Mm.1408	NM_009627	ENSMUSG00000030790	Adm	AM	adrenomedullin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-47330392-3	chr18	47330295	47330495	+	957.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311097, intron 1 of 17)	intron (NM_001311097, intron 1 of 17)	38473.0	NM_018744	20358.0	Mm.40909	NM_018744	ENSMUSG00000019647	Sema6a	A730020P05Rik|AI851735|Sema6A-1|Semaq|VIa	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152692878-3	chr1	152692783	152692983	+	897.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346117, intron 1 of 18)	URR1A|DNA|hAT-Charlie	-57668.0	NM_001081197	71281.0	Mm.158650	NM_001081197	ENSMUSG00000055547	Apobec4	4933431M11Rik	apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 4 (putative)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-48996715-2	chr7	48996615	48996815	+	595.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111016, intron 2 of 38)	intron (NM_001111016, intron 2 of 38)	37642.0	NM_001111016	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-97991688-1	chr16	97991588	97991788	+	553.0	f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-5627.0	NM_001362093	245305.0	Mm.148033	NM_001362093		B230307C23Rik	8030444G23Rik|EG245305	RIKEN cDNA B230307C23 gene	protein-coding	0.775000567971044	0.58609990348658	1.62739259640146	0.536920546264995	0.505659030394611	0.359591207443804	0.564685334381365	0.340366641891843	-3.01860453148849	0.0763006199167515	1
Merged-chr2-124664765-2	chr2	124664665	124664865	+	961.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_172537, exon 17 of 17)	exon (NM_172537, exon 17 of 17)	11184.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99874700-2	chr15	99874600	99874800	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113545, intron 1 of 10)	intron (NM_001113545, intron 1 of 10)	756.0	NM_001113545	65970.0	Mm.33207	NM_023063	ENSMUSG00000023022	Lima1	Eplin	LIM domain and actin binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-37742391-4	chr13	37742247	37742447	+	997.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-83691.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-103353818-2	chr12	103353718	103353918	+	717.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023049, intron 1 of 9)	intron (NM_023049, intron 1 of 9)	2183.0	NM_023049	65256.0	Mm.27159	NM_023049	ENSMUSG00000021200	Asb2	1110008E15Rik	ankyrin repeat and SOCS box-containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94944870-4	chr10	94944777	94944977	+	863.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018797)	promoter-TSS (NM_018797)	-299.0	NM_018797	54712.0	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-47731633-4	chr19	47731530	47731730	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026377)	promoter-TSS (NM_026377)	-126.0	NM_026377	67788.0	Mm.181610	NM_026377	ENSMUSG00000025066	Sfr1	6330577E15Rik|Meir5	SWI5 dependent recombination repair 1	protein-coding	6.96476905027572	6.65803645421512	6.66016971769344	7.1118464973395	7.57426958799198	7.39324878947447	6.76638384324127	7.05433514192077	0.386469215085993	0.0553693599137518	0.345880725570215
Merged-chr6-97288490-2	chr6	97288390	97288590	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 23 of 23)	intron (NM_145148, intron 23 of 23)	-35710.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-30954937-2	chr14	30954837	30955037	+	560.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001308328, intron 2 of 13)	intron (NM_001308328, intron 2 of 13)	3560.0	NM_011849	23955.0	Mm.251494	NM_011849	ENSMUSG00000021918	Nek4	Stk2	NIMA (never in mitosis gene a)-related expressed kinase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118717114-2	chr9	118717014	118717214	+	803.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 1 of 13)	MTD|LTR|ERVL-MaLR	5422.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-62360900-4	chr9	62360803	62361003	+	848.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009672, intron 1 of 6)	CT-rich|Low_complexity|Low_complexity	19560.0	NM_009672	11737.0	Mm.269088	NM_009672	ENSMUSG00000032249	Anp32a	Anp32|I1PP2A|LANP|PHAP1|W91701|pp32	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-132289353-4	chr2	132289273	132289473	+	992.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291039, intron 1 of 12)	RLTR17|LTR|ERVK	3434.0	NM_001291039	110911.0	Mm.284503	NM_138651	ENSMUSG00000058793	Cds2	5730450N06Rik|5730460C18Rik|AI854580|D2Wsu127e	CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-7281609-4	chr7	7281511	7281711	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001302386)	TTS (NM_001302386)	-3322.0	NR_003555	76229.0	Mm.387947	NM_001113468	ENSMUSG00000095730	Vmn2r29	6430701C03Rik	vomeronasal 2, receptor 29	protein-coding	5.79898676599637	5.63522068122278	5.38512408708894	4.90728074343927	5.59562668412731	6.00200597626078	5.45184429921465	5.30718269942642	0.155056882182812	0.598964013938307	0.972303230574462
Merged-chr11-23682948-4	chr11	23682838	23683038	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033654, intron 4 of 17)	intron (NM_001033654, intron 4 of 17)	16962.0	NM_028304	74467.0	Mm.29536	NM_028304	ENSMUSG00000020280	Pus10	2810013G11Rik|4933435A13Rik|AU014648|C77560|Ccdc139	pseudouridylate synthase 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64241453-4	chr5	64241347	64241547	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 1 of 18)	intron (NM_001289514, intron 1 of 18)	11090.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-26833556-3	chr10	26833488	26833688	+	617.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176837, intron 1 of 14)	intron (NM_176837, intron 1 of 14)	61076.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106817633-2	chr11	106817533	106817733	+	609.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166685, intron 16 of 18)	intron (NM_001166685, intron 16 of 18)	28381.0	NM_001166685	320162.0	Mm.30524	NM_177088	ENSMUSG00000018372	Cep95	4732496G21Rik|AI118346|AI448335|Ccdc45|D330027A14Rik|F630025I20Rik	centrosomal protein 95	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-148583526-3	chr4	148583440	148583640	+	992.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-7973.0	NM_009272	20810.0	Mm.10	NM_009272	ENSMUSG00000006442	Srm	AA407669|SpdST|SpdSy	spermidine synthase	protein-coding	2.80485456728523	1.76734127726611	1.6750175081565	3.69319460275851	5.50891524269438	5.02961156768073	4.55587997701695	5.19451318232855	3.22255187948546	0.002875534202877	0.0441561340010046
Merged-chr3-88685791-4	chr3	88685704	88685904	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028814)	promoter-TSS (NM_028814)	17.0	NR_151827	74200.0	Mm.251800	NM_028814	ENSMUSG00000028060	2810403A07Rik	A430106P18Rik|AI256352|AI451678|Blom7|Khdc4|Kiaa0907	RIKEN cDNA 2810403A07 gene	protein-coding	5.77876425753257	5.23254385687564	5.68353024530965	4.90508596041684	5.72781022286388	5.72348311667522	5.53614093461095	5.30453081603036	0.152514117334402	0.600384884618213	0.972964840983327
Merged-chr2-148902505-4	chr2	148902414	148902614	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27002.0	NM_009976	13010.0	Mm.4263	NM_009976	ENSMUSG00000027447	Cst3	CysC	cystatin C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47688100-4	chr17	47687992	47688192	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001290337)	TTS (NM_001290337)	294.0	NM_025365	66119.0	Mm.89912	NM_025365	ENSMUSG00000033475	Tomm6	1110002E23Rik|AI663970	translocase of outer mitochondrial membrane 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127475492-2	chr7	127475392	127475592	+	623.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_145589, exon 7 of 11)	exon (NM_145589, exon 7 of 11)	3878.0	NM_145589	233895.0	Mm.44183	NM_145589	ENSMUSG00000030822	Prr14	BC006909	proline rich 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6933464-2	chr19	6933364	6933564	+	882.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008431, intron 1 of 6)	intron (NM_008431, intron 1 of 6)	1051.0	NM_008431	16528.0	Mm.12894	NM_008431	ENSMUSG00000024957	Kcnk4	Catsperz|MLZ-622|TRAAK|TRAAKt|Tex40	potassium channel, subfamily K, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-118535636-4	chr7	118535516	118535716	+	908.3916630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_172476)	TTS (NM_172476)	-2260.0	NM_009940	12850.0	Mm.20634	NM_009940	ENSMUSG00000030652	Coq7	clk-1	demethyl-Q 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-95918648-3	chr5	95918548	95918748	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38291.0	NM_018866	55985.0	Mm.10116	NM_018866	ENSMUSG00000023078	Cxcl13	4631412M08Rik|ANGIE2|Angie|BCA-1|BLC|BLR1L|Scyb13	chemokine (C-X-C motif) ligand 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-122533185-2	chr14	122533085	122533285	+	600.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153443, intron 1 of 24)	B2_Mm1t|SINE|B2	-1143.0	NM_144844	110821.0	Mm.23876	NM_144844	ENSMUSG00000041650	Pcca	C79630	propionyl-Coenzyme A carboxylase, alpha polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89282185-3	chr3	89282062	89282262	+	889.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1211.0	NM_001162425	13636.0	Mm.15675	NM_010107	ENSMUSG00000027954	Efna1	AI325262|B61|Efl1|Epl1|Eplg1|Lerk1	ephrin A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-34050675-4	chr13	34050567	34050767	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026512, intron 4 of 6)	intron (NM_026512, intron 4 of 6)	13026.0	NM_026512	68021.0	Mm.140243	NM_026512	ENSMUSG00000038286	Bphl	2010012D11Rik|5730533B08Rik|AI115341	biphenyl hydrolase-like (serine hydrolase, breast epithelial mucin-associated antigen)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-22358167-4	chr6	22358067	22358267	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2086.0	NM_138587	27999.0	Mm.490307	NM_138587	ENSMUSG00000029672	Fam3c	D6Wsu176e|Ilei	family with sequence similarity 3, member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47054776-4	chr17	47054663	47054863	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44231.0	NM_001177374	224826.0	Mm.28234	NM_146078	ENSMUSG00000023977	Ubr2	9930021A08Rik|AI462103|AW540746|E130209G04Rik|mKIAA0349	ubiquitin protein ligase E3 component n-recognin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-125160494-3	chr4	125160393	125160593	+	874.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32612.0	NM_153159	230738.0	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-146135593-4	chr3	146135502	146135702	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134160, intron 8 of 11)	L2a|LINE|L2	13811.0	NM_134160	171166.0	Mm.114683	NM_134160	ENSMUSG00000036853	Mcoln3	6720490O21Rik|TRPML3|Va	mucolipin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-32405433-2	chr9	32405333	32405533	+	925.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11448.0	NM_001168354	56379.0	Mm.390168	NM_019659	ENSMUSG00000041248	Kcnj1	Kir1.1|ROMK|Romk2	potassium inwardly-rectifying channel, subfamily J, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167748318-2	chr2	167748218	167748418	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57141.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-145293296-2	chr4	145293196	145293396	+	670.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009401, intron 4 of 12)	intron (NM_009401, intron 4 of 12)	21851.0	NM_009401	21941.0	Mm.12810	NM_009401	ENSMUSG00000028602	Tnfrsf8	Cd30|D1S166E|Ki|Ki-1	tumor necrosis factor receptor superfamily, member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-38434165-4	chr18	38434027	38434227	+	812.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355749, intron 1 of 7)	RMER6A|LTR|ERVK	15220.0	NM_001355749	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-3128452-2	chr11	3128342	3128542	+	965.0	f0_balb.idr|f1_balb.idr	intron (NR_003517, intron 3 of 6)	intron (NR_003517, intron 3 of 6)	4421.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-137807774-4	chr2	137807676	137807876	+	949.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-448808.0	NM_001025431	228662.0	Mm.153405	NM_145534	ENSMUSG00000062098	Btbd3	mKIAA0952	BTB (POZ) domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123063671-2	chr5	123063571	123063771	+	959.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-12604.0	NM_001039723	330189.0	Mm.391872	NM_001039723	ENSMUSG00000054434	Tmem120b	-	transmembrane protein 120B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-100498463-1	chr14	100498363	100498563	+	942.0	f1_balb.idr	Intergenic	Lx4A|LINE|L1	-348667.0	NM_010636	16597.0	Mm.396499	NM_010636	ENSMUSG00000072294	Klf12	2700063E05Rik|AI225908|AI315654|AP-2rep|B130052C06Rik|D530033K05Rik	Kruppel-like factor 12	protein-coding	-0.379238391996924	-0.0459837777822622	-0.212304162696723	-0.0998058862421195	-0.0325585759538387	-0.368298092431185	-0.371680648291077	-0.374546546966673	-1.04064645661663	0.666279013512758	1
Merged-chr7-144583798-4	chr7	144583616	144583816	+	814.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1280.0	NM_010175	14082.0	Mm.5126	NM_010175	ENSMUSG00000031077	Fadd	Mort1/FADD	Fas (TNFRSF6)-associated via death domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-6568653-1	chr15	6568553	6568753	+	771.0	f0_c57.idr	Intergenic	Intergenic	-11194.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-100341965-1	chr6	100341865	100342065	+	713.0	f0_balb.idr	Intergenic	Intergenic	-54607.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-39150629-1	chr18	39150529	39150729	+	562.0	f0_balb.idr	intron (NM_001361073, intron 11 of 21)	LTR89|LTR|ERVL?	157484.0	NM_175164	71302.0	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding	0.914617733130686	1.60242948169113	0.978264573384175	0.760247934666194	1.58786998008558	0.787199112227127	1.3081473932028	1.59472155618775	0.985430715297912	0.479513711972178	0.928135972721369
Merged-chr15-73598661-2	chr15	73598561	73598761	+	789.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357747, intron 2 of 7)	ID4|SINE|ID	-2135.0	NM_001168255	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-160842746-1	chr1	160842646	160842846	+	571.0	f1_c57bl6.idr	Intergenic	Intergenic	-49808.0	NM_013862	29809.0	Mm.25833	NM_013862	ENSMUSG00000026721	Rabgap1l	5830411O09Rik|8430421H08Rik|9630005B12Rik|AW049894|HHL|Hh1|mKIAA0471	RAB GTPase activating protein 1-like	protein-coding	1.38165941771059	1.86714314992159	1.90966722914728	2.52990418929263	0.842609238033281	0.915219520479895	0.892556580775069	1.47489381318504	-3.27828958682013	0.0140995038043319	0.138964277090121
Merged-chr7-30280025-4	chr7	30279832	30280032	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_144498)	promoter-TSS (NR_144498)	-162.0	NR_144498	108167416.0	Mm.471845	NR_144498		LOC108167416	-	uncharacterized LOC108167416	ncRNA	3.30390263783027	2.3791506195014	2.73341985838104	2.04937571058184	3.14449870898817	3.43519573208131	2.97739004275402	3.06887246815972	0.800945746997976	0.245980387714383	0.74533266026342
Merged-chr4-133189842-1	chr4	133189742	133189942	+	753.0	f1_c57bl6.idr	intron (NM_153423, intron 5 of 8)	intron (NM_153423, intron 5 of 8)	-5813.0	NR_105984	102466215.0		NR_105984	ENSMUSG00000099202	Mir7017	Gm27945|mmu-mir-7017	microRNA 7017	ncRNA	-1.09215782419892	-1.20594174989806	-1.21609547624201	-1.06799521181591	-1.23063571627698	-1.20374139504204	-1.21379689516108	-0.927787428083876	0.106594341804705	0.973106574439182	1
Merged-chr16-87702306-2	chr16	87702206	87702406	+	709.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007520, intron 1 of 4)	intron (NM_007520, intron 1 of 4)	3352.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-4275933-4	chr8	4275840	4276040	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011592)	promoter-TSS (NM_011592)	-35.0	NM_011592	21856.0	Mm.195249	NM_011592	ENSMUSG00000002949	Timm44	0710005E20Rik|D8Ertd118e|Mimt44|Tim44	translocase of inner mitochondrial membrane 44	protein-coding	-2.18233058068552	-2.15536956715525	-2.16352280018114	-2.04193253143548	-2.18043796738662	-2.15360272754651	-2.16167708693786	-2.16902129354933	-0.683654500252594	0.846597994014493	1
Merged-chr11-120360240-4	chr11	120360121	120360321	+	984.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1313.0	NM_172802	238021.0	Mm.481403	NM_172802	ENSMUSG00000025380	Fscn2	A930022G03|Ahl8|C630046B20Rik	fascin actin-bundling protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-94706997-1	chr9	94706897	94707097	+	591.0	f1_c57bl6.idr	intron (NM_177909, intron 2 of 15)	intron (NM_177909, intron 2 of 15)	37105.0	NM_177909	331004.0	Mm.326125	NM_177909	ENSMUSG00000031129	Slc9a9	5730527A11Rik|9930105B05|AI854429|Nhe9	solute carrier family 9 (sodium/hydrogen exchanger), member 9	protein-coding	-1.02623923925007	-0.0785174723847883	-1.01664411116562	-1.02119558009008	-1.02548487198161	-0.999699361692546	-1.0134913975053	-1.0206685408436	-3.25251655617119	0.303463431741018	1
Merged-chr16-21629315-2	chr16	21629215	21629415	+	622.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081366, intron 45 of 46)	Lx9|LINE|L1	65350.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-13938901-3	chr17	13938818	13939018	+	925.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9455.0	NM_001122977	635895.0	Mm.388844	NM_001122977	ENSMUSG00000067941	Gm7168	EG635895	predicted gene 7168	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-156939555-1	chr1	156939455	156939655	+	546.0	f1_balb.idr	promoter-TSS (NM_001159965)	promoter-TSS (NM_001159965)	71.0	NM_001159968	78255.0	Mm.28376	NM_023884	ENSMUSG00000026594	Ralgps2	1810020P17Rik|2210408F11Rik|4921528G01Rik|9130014M22Rik|AU043409|AW046161	Ral GEF with PH domain and SH3 binding motif 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-55543754-2	chr15	55543654	55543854	+	593.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026759, intron 3 of 6)	B3|SINE|B2	13558.0	NM_026759	68537.0	Mm.236795	NM_026759	ENSMUSG00000022370	Mrpl13	1110002D09Rik	mitochondrial ribosomal protein L13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-97533963-3	chr16	97533863	97534063	+	701.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-2118.0	NR_003508	17858.0	Mm.14157	NM_013606	ENSMUSG00000023341	Mx2	AI528743|Mx-2	MX dynamin-like GTPase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-125727496-3	chr8	125727403	125727603	+	714.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6700.0	NM_025636	66566.0	Mm.25296	NM_025636	ENSMUSG00000031851	Ntpcr	2310079N02Rik|AI449709	nucleoside-triphosphatase, cancer-related	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-32196189-4	chr5	32196071	32196271	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36537.0	NM_030072	665270.0	Mm.160067	NM_030072	ENSMUSG00000029134	Plb1	4632413E21Rik|4930433E17Rik|4930539A06Rik|BC033606	phospholipase B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-74988733-4	chr15	74988665	74988865	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5335.0	NM_020498	57248.0	Mm.358339	NM_020498	ENSMUSG00000022586	Ly6i	AI789751|Ly-6I|Ly-6M	lymphocyte antigen 6 complex, locus I	protein-coding	4.28787018584737	3.53975705231466	3.41733931310332	2.21300322262071	3.33510517706088	4.65862501337789	3.53633966458381	3.73145533424437	0.501974655692245	0.412418252329697	0.894783826796838
Merged-chr11-70817048-1	chr11	70816948	70817148	+	570.0	f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-4487.0	NM_001045526	327957.0	Mm.164325	NM_001045526	ENSMUSG00000057135	Scimp	A430084P05Rik	SLP adaptor and CSK interacting membrane protein	protein-coding	-1.84290330806959	-1.81297841501903	-1.82202794967551	-1.82946150688462	-1.69841214230253	-1.81101734310794	-1.67758883978339	-1.82813090369827	1.43472749533542	0.684151459466795	1
Merged-chr11-117115056-4	chr11	117114902	117115102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029459)	promoter-TSS (NR_029459)	-170.0	NR_029459	74136.0	Mm.272312	NM_028777	ENSMUSG00000020823	Sec14l1	1200017E04Rik|2810012L19Rik|Naa-35	SEC14-like lipid binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125364677-2	chr6	125364577	125364777	+	893.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_198604, exon 15 of 17)	exon (NM_198604, exon 15 of 17)	14954.0	NM_011609	21937.0	Mm.1258	NM_011609	ENSMUSG00000030341	Tnfrsf1a	CD120a|FPF|TNF-R|TNF-R-I|TNF-R1|TNF-R55|TNF-alphaR1|TNFAR|TNFR60|TNFRI|TNFRp55|TNFalpha-R1|Tnfr-2|Tnfr1|p55|p55-R	tumor necrosis factor receptor superfamily, member 1a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-83528445-1	chr9	83528345	83528545	+	666.0	f0_balb.idr	Intergenic	Intergenic	-19893.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-50254976-3	chr11	50254857	50255057	+	688.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_175334)	TTS (NM_175334)	-16425.0	NR_132733	17001.0	Mm.245151	NM_008521	ENSMUSG00000020377	Ltc4s	-	leukotriene C4 synthase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-136147807-4	chr4	136147712	136147912	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	3990.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131109700-2	chr1	131109598	131109798	+	729.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-11855.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-17770743-4	chr6	17770658	17770858	+	983.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022332, intron 1 of 15)	intron (NM_022332, intron 1 of 15)	21588.0	NM_001083315	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122129350-2	chr5	122129250	122129450	+	845.400024	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289811, intron 3 of 12)	intron (NM_001289811, intron 3 of 12)	5543.0	NM_001289811	330188.0	Mm.386907	NM_183307	ENSMUSG00000043036	Ccdc63	4921511C16Rik	coiled-coil domain containing 63	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-30793294-4	chr3	30793213	30793413	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_027016, exon 1 of 8)	5' UTR (NM_027016, exon 1 of 8)	437.0	NM_001357528	69276.0	Mm.26017	NM_027016	ENSMUSG00000027706	Sec62	3100002M17Rik|AI844545|AW545092|Dtrp1|HTP1|Tloc1	SEC62 homolog (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-110707558-2	chr12	110707458	110707658	+	808.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-11163.0	NM_010480	15519.0	Mm.1843	NM_010480	ENSMUSG00000021270	Hsp90aa1	86kDa|89kDa|AL024080|AL024147|Hsp86-1|Hsp89|Hsp90|Hspca|hsp4	heat shock protein 90, alpha (cytosolic), class A member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-87956728-4	chr10	87956618	87956818	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9953.0	NR_000040	22172.0	Mm.391420	NR_000040		Tyms-ps	-	thymidylate synthase, pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89203440-2	chr3	89203340	89203540	+	714.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_122037, intron 2 of 11)	intron (NR_122037, intron 2 of 11)	515.0	NR_122037	14466.0	Mm.5031	NM_008094	ENSMUSG00000028048	Gba	GBA1|GC|GCase|GLUC|betaGC	glucosidase, beta, acid	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-59879857-1	chr10	59879757	59879957	+	1000.0	f0_c57.idr	intron (NM_019965, intron 1 of 8)	CpG	266.0	NM_019965	56709.0	Mm.103610	NM_019965	ENSMUSG00000020109	Dnajb12	Dj10|mDj10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101406516-2	chr7	101406416	101406616	+	889.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001040111, intron 29 of 33)	intron (NM_001040111, intron 29 of 33)	12128.0	NM_198096	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-124143031-4	chr9	124142968	124143168	+	904.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21525.0	NM_009917	12774.0	Mm.14302	NM_009917	ENSMUSG00000079227	Ccr5	AM4-7|CD195|Cmkbr5	chemokine (C-C motif) receptor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-60211995-4	chr18	60211864	60212064	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033767)	promoter-TSS (NM_001033767)	-113.0	NM_001033767	240327.0	Mm.357104	NM_001033767	ENSMUSG00000073555	Gm4951	EG240327|Ifgga2	predicted gene 4951	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-95732414-6	chr16	95732336	95732536	+	758.388916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30029.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26244747-4	chr17	26244613	26244813	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001206335)	promoter-TSS (NM_001206335)	-471.0	NM_001206335	106581.0	Mm.28844	NM_207217	ENSMUSG00000024187	Fam234a	Itfg3	family with sequence similarity 234, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-93429701-3	chr10	93429618	93429818	+	953.3777470000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3389.0	NR_106161	102465791.0		NR_106161	ENSMUSG00000098679	Mir7688	Gm27874|mmu-mir-7688	microRNA 7688	ncRNA	3.81803520279581	3.51283242551375	4.56305264416557	4.40005985312843	4.17568575139136	4.94874932178759	4.548931748612	4.04212063644175	0.427169185330074	0.334618171589447	0.83524594092861
Merged-chr9-15715129-2	chr9	15715029	15715229	+	682.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_172289, intron 1 of 10)	intron (NM_172289, intron 1 of 10)	5391.0	NM_172289	234967.0	Mm.138815	NM_172289	ENSMUSG00000043885	Slc36a4	6330573I15Rik|PAT4	solute carrier family 36 (proton/amino acid symporter), member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-3491392-4	chr5	3491254	3491454	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 5 of 7)	intron (NM_009873, intron 5 of 7)	-52479.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-53958560-1	chr6	53958460	53958660	+	610.0	f0_balb.idr	intron (NM_027749, intron 3 of 12)	G-rich|Low_complexity|Low_complexity	20113.0	NM_027749	71287.0	Mm.158654	NM_027749	ENSMUSG00000052955	Cpvl	4933436L16Rik|HVLP	carboxypeptidase, vitellogenic-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-29729173-2	chr16	29729073	29729273	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	149839.0	NM_001199177	74143.0	Mm.274285	NM_133752	ENSMUSG00000038084	Opa1	1200011N24Rik|AI225888|AI847218|lilr3|mKIAA0567	OPA1, mitochondrial dynamin like GTPase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85451949-2	chr12	85451849	85452049	+	553.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21941.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-3018035-1	chr9	3017935	3018135	+	1000.0	f1_c57bl6.idr	Intergenic	GSAT_MM|Satellite|Satellite	20708.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-87751733-4	chr11	87751595	87751795	+	884.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5169.0	NR_029555	387160.0		NR_029555	ENSMUSG00000105196	Mir142	Mirn142|miR-142|mir-142a|mmu-mir-142|mmu-mir-142a	microRNA 142	ncRNA	4.15425532018818	2.98486059930318	4.02962971926888	4.08399729843028	3.81738651030697	3.39231137978914	3.27682666256997	3.68869106128052	-0.481209488829742	0.353789222692811	0.853132398390271
Merged-chr9-64749507-4	chr9	64749399	64749599	+	793.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-11743.0	NM_017382	53869.0	Mm.1387	NM_017382	ENSMUSG00000004771	Rab11a	-	RAB11A, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-96466456-2	chr13	96466356	96466556	+	576.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001042714, intron 1 of 13)	intron (NM_001042714, intron 1 of 13)	4704.0	NM_001042714	271144.0	Mm.470057	NM_001042714	ENSMUSG00000047117	Ankdd1b	9330128J19Rik	ankyrin repeat and death domain containing 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-24246067-4	chr18	24245967	24246167	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013814, exon 4 of 13)	exon (NM_013814, exon 4 of 13)	40073.0	NM_001160404	14423.0	Mm.30249	NM_013814	ENSMUSG00000000420	Galnt1	-	polypeptide N-acetylgalactosaminyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-29006338-2	chr7	29006313	29006513	+	941.25	f0_balb.idr|f1_balb.idr	intron (NM_009109, intron 101 of 105)	MTEa|LTR|ERVL-MaLR	23559.0	NM_008279	26411.0	Mm.148278	NM_008279	ENSMUSG00000037337	Map4k1	Hpk1|mHPK1	mitogen-activated protein kinase kinase kinase kinase 1	protein-coding	1.22861730167159	1.0918800796497	0.550778994789134	0.724031216069845	0.952866021931103	0.562799303183515	1.38543142245857	0.544475419378396	-0.0568634873752528	0.971965222316336	0.998431161219273
Merged-chr6-108573599-1	chr6	108573499	108573699	+	550.0	f1_balb.idr	Intergenic	Intergenic	49568.0	NR_040757	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-84443070-1	chr3	84442970	84443170	+	741.5	f0_balb.idr	3' UTR (NM_001205355, exon 12 of 12)	3' UTR (NM_001205355, exon 12 of 12)	36421.0	NM_001205355	229474.0	Mm.331107	NM_001033301	ENSMUSG00000041842	Fhdc1	6330505N24Rik|Gm126	FH2 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-19894767-4	chr3	19894677	19894877	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027985)	promoter-TSS (NR_027985)	-94.0	NR_027985	70808.0	Mm.427103	NR_027985	ENSMUSG00000048106	4632415L05Rik	AI662792	RRS1 ribosome biogenesis regulator homolog pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-50095852-4	chr18	50095749	50095949	+	876.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-32352.0	NM_008292	15488.0	Mm.277857	NM_008292	ENSMUSG00000024507	Hsd17b4	17-beta-HSD|17[b]-HSD|DBP|MFE-2|MFP2|MPF-2|Mfp-2|perMFE-2	hydroxysteroid (17-beta) dehydrogenase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-55087136-2	chr1	55087036	55087236	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356512, intron 1 of 11)	intron (NM_001356512, intron 1 of 11)	796.0	NM_010477	15510.0	Mm.1777	NM_010477	ENSMUSG00000025980	Hspd1	60kDa|CPN60|HSP-60|HSP-65|Hsp60	heat shock protein 1 (chaperonin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-72603607-2	chr14	72603507	72603707	+	644.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_207636, intron 3 of 25)	intron (NM_207636, intron 3 of 25)	106396.0	NM_207636	319448.0	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-33380247-4	chr12	33380128	33380328	+	998.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131031, intron 2 of 3)	B3|SINE|B2	14532.0	NR_131031	75836.0	Mm.410807	NR_131031	ENSMUSG00000085664	Atxn7l1os2	4930556N08Rik	ataxin 7-like 1, opposite strand 2	ncRNA	2.40627391731637	2.40424850769952	1.54996560248782	2.61753000699907	1.794459273946	1.33961337009388	2.54393096537105	2.26730550654446	-0.552296607254223	0.567035546299238	0.962562732139494
Merged-chr11-73199256-7	chr11	73199254	73199454	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031251)	promoter-TSS (NM_031251)	-128.0	NM_029031	74637.0	Mm.200905	NM_029031	ENSMUSG00000005951	Shpk	4930431K22Rik|AI194947|AW260459|Carkl	sedoheptulokinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19096695-2	chr7	19096595	19096795	+	588.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_011383, exon 2 of 3)	exon (NM_011383, exon 2 of 3)	2151.0	NM_011383	20475.0	Mm.3410	NM_011383	ENSMUSG00000040841	Six5	Dmahp|MDMAHP|TrexBF	sine oculis-related homeobox 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27373646-4	chr2	27373558	27373758	+	964.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_133905, intron 1 of 29)	MTC|LTR|ERVL-MaLR	53950.0	NR_133905	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-4741219-4	chr7	4741093	4741293	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358044, intron 1 of 8)	intron (NM_001358044, intron 1 of 8)	1066.0	NM_001358044	232811.0	Mm.247844	NM_146177	ENSMUSG00000059851	Kmt5c	BC024816|Suv4-20h2|Suv420h2	lysine methyltransferase 5C	protein-coding	0.564039367116845	0.89071103953975	0.228913487977298	0.225063116570873	0.219666341812132	0.901129790764222	0.230018930740372	0.225733903276946	-0.472019719875938	0.822191547085239	1
Merged-chr15-100421368-4	chr15	100421256	100421456	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008732, intron 1 of 16)	intron (NM_008732, intron 1 of 16)	1699.0	NM_001146161	18174.0	Mm.234608	NM_008732	ENSMUSG00000023030	Slc11a2	DCT1|DMT1|Nramp2|mk|van	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-121477611-3	chr10	121477510	121477710	+	927.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1360.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	1.3280433528307	1.51422909950248	2.37046272701443	2.90903224589152	3.23264236733503	3.31766856433772	3.62846219378703	3.63123825200852	2.28856461448585	0.00348600108084465	0.0505916663167199
Merged-chr18-36196696-3	chr18	36196599	36196799	+	850.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001167891, exon 1 of 10)	exon (NM_001167891, exon 1 of 10)	461.0	NM_001167891	100042150.0	Mm.380390	NM_001167891	ENSMUSG00000060275	Nrg2	Don1|NTAK	neuregulin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-119075539-4	chr9	119075458	119075658	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019676, intron 5 of 14)	intron (NM_019676, intron 5 of 14)	12703.0	NM_001293648	18799.0	Mm.23963	NM_019676	ENSMUSG00000010660	Plcd1	AW212592|C79986	phospholipase C, delta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35843778-2	chr17	35843678	35843878	+	766.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001010833, intron 1 of 15)	B2_Mm2|SINE|B2	2280.0	NM_001010833	240087.0	Mm.218511	NM_001010833	ENSMUSG00000061607	Mdc1	6820401C03|AA413496|Nfbd1|mKIAA0170	mediator of DNA damage checkpoint 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95989610-2	chr3	95989510	95989710	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_023320, exon 6 of 6)	exon (NM_023320, exon 6 of 6)	4100.0	NR_045872	668224.0	Mm.357766	NR_045872		Gm9054	EG668224	predicted gene 9054	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43383057-1	chr4	43382957	43383157	+	1000.0	f1_c57bl6.idr	intron (NM_001037709, intron 1 of 11)	intron (NM_001037709, intron 1 of 11)	1075.0	NM_001037709	100213.0	Mm.235730	NM_199057	ENSMUSG00000035969	Rusc2	AI840675|mKIAA0375	RUN and SH3 domain containing 2	protein-coding	2.25785518167077	2.25129751956392	2.16937207656563	1.86015896674635	1.29453093170343	1.16266671161725	1.1342666110881	2.75620634599712	-0.744477828548038	0.507983860749815	0.943374049681311
Merged-chr7-88282018-2	chr7	88281918	88282118	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009982, intron 2 of 6)	intron (NM_009982, intron 2 of 6)	3933.0	NM_001311790	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-93486211-2	chr10	93486111	93486311	+	629.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2557.0	NM_010401	15109.0	Mm.13000	NM_010401	ENSMUSG00000020017	Hal	Hsd|his|histidase	histidine ammonia lyase	protein-coding	-0.498887763977476	-0.625812393905238	-0.629011105979215	-0.631469817102107	-0.268449198604629	-0.141976023063945	-0.628306756540675	-0.631040867454189	2.35075214946115	0.381820792343983	1
Merged-chr8-69902430-3	chr8	69902329	69902529	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_032004, exon 1 of 1)	exon (NM_032004, exon 1 of 1)	129.0	NM_023312	67184.0	Mm.21162	NM_023312	ENSMUSG00000036199	Ndufa13	2700054G14Rik|AU022060|CDA016|CGI-39|GRIM-19|Grim19	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-20803210-4	chr18	20803114	20803314	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-56810.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-136143371-2	chr4	136143271	136143471	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008321)	promoter-TSS (NM_008321)	-451.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101974344-4	chr11	101974231	101974431	+	782.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028207, exon 3 of 3)	3' UTR (NM_028207, exon 3 of 3)	-7316.0	NM_024449	74499.0	Mm.265602	NM_024449	ENSMUSG00000001494	Sost	5430411E23Rik	sclerostin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89245684-2	chr3	89245584	89245784	+	559.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025327)	promoter-TSS (NM_025327)	213.0	NM_183037	360213.0	Mm.331156	NM_183037	ENSMUSG00000042766	Trim46	TRIFIC	tripartite motif-containing 46	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-86727142-2	chr12	86727042	86727242	+	596.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144524)	promoter-TSS (NM_144524)	-682.0	NM_144524	68737.0	Mm.63979	NM_144524	ENSMUSG00000021257	Angel1	1110030H02Rik|mKIAA0759	angel homolog 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-44607721-2	chr18	44607616	44607816	+	665.5	f0_balb.idr|f1_c57bl6.idr	intron (NM_001085373, intron 3 of 18)	intron (NM_001085373, intron 3 of 18)	-53949.0	NR_026853	626275.0	Mm.427116	NR_026853	ENSMUSG00000097610	A930012L18Rik	-	RIKEN cDNA A930012L18 gene	ncRNA	2.82653454851397	1.46390324940772	2.30236399749764	2.32739511850443	1.80564391388511	1.47360778691047	1.17503906025519	1.90058406705295	-1.83832137954972	0.0750258272129731	0.415330609766803
Merged-chr1-118507457-4	chr1	118507421	118507621	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359330, intron 16 of 39)	ID4|SINE|ID	-48256.0	NR_027901	68204.0	Mm.443536	NR_027901	ENSMUSG00000107722	2900060B14Rik	-	RIKEN cDNA 2900060B14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-49187632-4	chr13	49187542	49187742	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013610)	promoter-TSS (NM_013610)	95.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-44734515-4	chr13	44734390	44734590	+	895.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205043, intron 1 of 17)	intron (NM_001205043, intron 1 of 17)	3219.0	NM_001205043	16468.0	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-25554877-3	chr18	25554775	25554975	+	623.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362322, intron 2 of 12)	intron (NM_001362322, intron 2 of 12)	124873.0	NM_001362337	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-87357855-4	chr3	87357753	87357953	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009690)	promoter-TSS (NM_009690)	-28.0	NM_009690	11801.0	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	2.88617469082012	3.02765990033012	3.13134428380631	3.56171876902881	2.81663576809512	2.26460362113921	3.85516373452006	2.96168454157099	-0.10610587649758	0.873525988217252	0.998431161219273
Merged-chr2-61607106-2	chr2	61607006	61607206	+	709.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_149323, intron 2 of 9)	intron (NR_149323, intron 2 of 9)	14009.0	NR_149323	21353.0	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-20370976-4	chr14	20370885	20371085	+	876.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024512, intron 7 of 13)	PB1D10|SINE|Alu	17925.0	NM_134081	108671.0	Mm.2871	NM_134081	ENSMUSG00000021811	Dnajc9	5330419I01Rik|AU020082	DnaJ heat shock protein family (Hsp40) member C9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-24614141-4	chr13	24614042	24614242	+	863.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286101)	promoter-TSS (NM_001286101)	-464.0	NM_001286101	193385.0	Mm.217319	NM_029679	ENSMUSG00000036006	Ripor2	Fam65b	RHO family interacting cell polarization regulator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-79893906-1	chr15	79893806	79894006	+	1000.0	f1_c57bl6.idr	promoter-TSS (NR_030675)	promoter-TSS (NR_030675)	-768.0	NR_030675	109361.0	Mm.394656	NR_030675		D730005E14Rik	-	RIKEN cDNA D730005E14 gene	ncRNA	1.32427512212106	0.737024290523508	0.718861090848326	2.25085655218087	0.683396621550092	1.67691749249276	1.33473894474865	0.936752809435265	-0.715964911102053	0.619570915775813	0.978663311075481
Merged-chr5-38505533-4	chr5	38505424	38505624	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3372.0	NM_145559	117591.0	Mm.260137	NM_145559	ENSMUSG00000005107	Slc2a9	Glut9|SLC2A9B|SLC2a9A	solute carrier family 2 (facilitated glucose transporter), member 9	protein-coding	-0.826079301973014	-0.815976911389005	-0.48856768288447	-0.822034307155513	-0.825477939972824	-0.813140593568297	-0.233450949098413	-0.821608315586778	1.01638391311071	0.737217197678661	1
Merged-chr12-91758298-3	chr12	91758230	91758430	+	809.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 1 of 6)	intron (NM_175367, intron 1 of 6)	28106.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-45550156-2	chr19	45550056	45550256	+	857.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10408.0	NM_001330506	56626.0	Mm.46509	NM_020032	ENSMUSG00000025218	Poll	1110003P06Rik|AV007317	polymerase (DNA directed), lambda	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-14381019-4	chr9	14380920	14381120	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_028013, exon 1 of 2)	5' UTR (NM_028013, exon 1 of 2)	222.0	NM_028013	71946.0	Mm.41423	NM_028013	ENSMUSG00000037419	Endod1	2210414F18Rik|2310067E08Rik|C85344	endonuclease domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-38202444-2	chr3	38202363	38202563	+	1000.0	f0_balb.idr|f0_c57.idr	TTS (NR_040541)	TTS (NR_040541)	5656.0	NR_040541	71342.0	Mm.410782	NR_040541	ENSMUSG00000106002	5430434I15Rik	-	RIKEN cDNA 5430434I15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-134920340-4	chr4	134920249	134920449	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3276.0	NM_023665	27981.0	Mm.331964	NM_023665	ENSMUSG00000037266	Rsrp1	2700043I21Rik|D4Ucla2|D4Wsu53e	arginine/serine rich protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-3666544-1	chr13	3666444	3666644	+	542.0	f1_c57bl6.idr	Intergenic	B3A|SINE|B2	32512.0	NM_001267724	142688.0	Mm.253061	NM_178283	ENSMUSG00000033781	Asb13	2210015B19Rik|6430573K02Rik|Asb-13|C85285	ankyrin repeat and SOCS box-containing 13	protein-coding	0.690210132525211	0.44956881405041	0.88957108300884	0.961493472318735	0.903758512111134	0.451173080215821	0.899220694899227	0.437919052916182	-0.380103982040873	0.823345192124185	1
Merged-chr19-8710152-2	chr19	8710052	8710252	+	739.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161413, intron 4 of 9)	intron (NM_001161413, intron 4 of 9)	3745.0	NM_008577	17254.0	Mm.4114	NM_008577	ENSMUSG00000010095	Slc3a2	4F2|4F2HC|AI314110|Cd98|Ly-10|Ly-m10|Ly10|Mdu1|Mgp-2hc|NACAE	solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-14598357-4	chr19	14598266	14598466	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302950)	promoter-TSS (NM_001302950)	-183.0	NM_001302947	21888.0	Mm.103638	NM_011600	ENSMUSG00000024642	Tle4	5730411M05Rik|AA792082|Bce-1|Bce1|ESTM13|ESTM14|Grg4|X83332|X83333|grg-4	transducin-like enhancer of split 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45452962-3	chr7	45452857	45453057	+	874.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030678, intron 14 of 15)	B1_Mus1|SINE|Alu	6929.0	NM_010240	14325.0	Mm.30357	NM_010240	ENSMUSG00000050708	Ftl1	Ftl|Ftl-1|L-ferritin	ferritin light polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10318020-4	chr19	10317910	10318110	+	718.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13133.0	NM_198114	269060.0	Mm.329718	NM_198114	ENSMUSG00000035735	Dagla	Nsddr	diacylglycerol lipase, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80794975-2	chr10	80794875	80795075	+	744.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_199322, exon 28 of 28)	3' UTR (NM_199322, exon 28 of 28)	3651.0	NM_023900	78670.0	Mm.41479	NM_023900	ENSMUSG00000035278	Plekhj1	9530063M10Rik	pleckstrin homology domain containing, family J member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-63962959-2	chr3	63962859	63963059	+	549.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001272035, intron 1 of 6)	B1F1|SINE|Alu	1774.0	NM_001272035	11416.0	Mm.135619	NM_015728	ENSMUSG00000027822	Slc33a1	AI315656|AI788741|Acatn|D630022N01Rik	solute carrier family 33 (acetyl-CoA transporter), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-64863709-2	chr7	64863605	64863805	+	637.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183087, intron 2 of 9)	intron (NM_183087, intron 2 of 9)	9335.0	NM_023239	66647.0	Mm.19944	NM_023239	ENSMUSG00000070520	Nsmce3	5730494G16Rik|AI642138|BB044375|HCA4|Mageg1|Ndnl2|mage-g1	NSE3 homolog, SMC5-SMC6 complex component	protein-coding	0.533780791803121	0.190480679826784	0.731686244870707	0.180490561280698	0.723403832171525	0.191754852316889	0.18608008812622	0.476913015756658	-0.105390609717781	0.95789804091429	1
Merged-chr13-23557164-2	chr13	23557064	23557264	+	648.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	2132.0	NM_145713	14957.0	Mm.247046	NM_145713	ENSMUSG00000052565	Hist1h1d	H1.3|H1D|H1f3|H1s-4	histone cluster 1, H1d	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-43032643-4	chr17	43032557	43032757	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178589, intron 1 of 5)	intron (NM_178589, intron 1 of 5)	16102.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	2.77965851583974	1.62342893616575	2.42356167220475	2.73245266195998	3.2368928094912	3.14228287982238	3.12855245723119	3.39399568309344	1.39168401503008	0.0489474980819801	0.322322767281887
Merged-chr2-122127640-1	chr2	122127540	122127740	+	557.0	f1_c57bl6.idr	intron (NM_026251, intron 5 of 17)	intron (NM_026251, intron 5 of 17)	-9254.0	NM_145531	214585.0	Mm.222303	NM_145531	ENSMUSG00000033396	Spg11	6030465E24Rik|A330015I11|C530005A01Rik	SPG11, spatacsin vesicle trafficking associated	protein-coding	0.929285851050603	0.548830418769276	0.539235445827812	1.30277810852095	0.68222438575216	0.550981438004122	1.04040449334587	1.31194356907213	0.273831796427839	0.86613834758086	1
Merged-chr13-52622676-2	chr13	52622576	52622776	+	544.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011518, intron 4 of 13)	intron (NM_011518, intron 4 of 13)	25794.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-122098197-2	chr10	122098097	122098297	+	724.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1095.0	NM_153059	216395.0	Mm.236764	NM_153059	ENSMUSG00000034620	Tmem5	6330415D21Rik	transmembrane protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-121594797-2	chr3	121594697	121594897	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48688.0	NR_036456	100503044.0	Mm.65320	NM_176992	ENSMUSG00000044522	A730020M07Rik	-	RIKEN cDNA A730020M07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-64375570-2	chr1	64375470	64375670	+	812.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-157234.0	NM_009952	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-20857304-3	chr9	20857201	20857401	+	882.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11341.0	NM_175687	319278.0	Mm.249932	NM_175687	ENSMUSG00000038884	A230050P20Rik	RyDEN	RIKEN cDNA A230050P20 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-104621166-2	chr8	104621066	104621266	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007663, intron 6 of 17)	intron (NM_007663, intron 6 of 17)	3230.0	NM_007663	12556.0	Mm.19423	NM_007663	ENSMUSG00000031881	Cdh16	-	cadherin 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65684530-1	chr9	65684430	65684630	+	743.0	f1_c57bl6.idr	intron (NM_001301307, intron 1 of 4)	intron (NM_001301307, intron 1 of 4)	7982.0	NM_001301307	18247.0	Mm.116749	NM_010952	ENSMUSG00000040652	Oaz2	AZ-2|AZ2|Oaz2-ps|Sez15	ornithine decarboxylase antizyme 2	protein-coding	0.128099044413056	0.499880166558594	0.140409325860772	0.667798477500671	0.40142594693188	0.76896805894846	0.141730862323534	0.136592677518426	0.0678419403747871	0.973172881570598	1
Merged-chr15-68068445-4	chr15	68068319	68068519	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	190437.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-44702910-2	chr10	44702810	44703010	+	789.799988	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-244162.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31187120-2	chr14	31187020	31187220	+	965.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_022656, exon 10 of 21)	exon (NM_022656, exon 10 of 21)	-18479.0	NM_138672	192187.0	Mm.220821	NM_138672	ENSMUSG00000042286	Stab1	FEEL-1|FELE-1|MFEEL-1|MS-1|STAB-1|mKIAA0246	stabilin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-7860586-2	chr14	7860486	7860686	+	727.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081427, intron 1 of 45)	intron (NM_001081427, intron 1 of 45)	42629.0	NM_134080	286940.0	Mm.489652	NM_134080	ENSMUSG00000025278	Flnb	AL024016|Fln-b	filamin, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-63912619-2	chr7	63912523	63912723	+	808.0	f0_balb.idr|f0_c57.idr	intron (NM_021366, intron 1 of 1)	intron (NM_021366, intron 1 of 1)	-4234.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	0.922115532109297	1.06036705540565	0.887830243055734	0.557589912693519	0.931045425413035	1.07023742466838	0.895664438769964	0.558667431467171	0.0403690932844318	0.97899834434869	1
Merged-chr7-126848720-2	chr7	126848620	126848820	+	858.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_010069, exon 2 of 11)	exon (NM_010069, exon 2 of 11)	1167.0	NM_010069	13446.0	Mm.266301	NM_010069	ENSMUSG00000052301	Doc2a	-	double C2, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-143115230-4	chr6	143115160	143115360	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153819, intron 7 of 8)	intron (NR_153819, intron 7 of 8)	-15108.0	NM_001109688	74741.0	Mm.130260	NM_029081	ENSMUSG00000030279	C2cd5	5730419I09Rik|C030008B15Rik|CDP138	C2 calcium-dependent domain containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-17658610-4	chr12	17658504	17658704	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32205.0	NM_001361645	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	3.12708298209931	3.07170613315818	3.1983076938861	4.12069709135472	3.31790957190642	3.22195397846698	4.055898095731	3.99346377880119	0.357245945047678	0.52800182882314	0.949105964175994
Merged-chr8-22658714-4	chr8	22658612	22658812	+	982.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010546)	TTS (NM_010546)	-5275.0	NM_011130	18970.0	Mm.123211	NM_011130	ENSMUSG00000031536	Polb	A430088C08Rik	polymerase (DNA directed), beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166293159-4	chr2	166293069	166293269	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033467, intron 2 of 2)	intron (NR_033467, intron 2 of 2)	19261.0	NR_033467	670775.0	Mm.384326	NR_033467	ENSMUSG00000084840	Gm11468	-	predicted gene 11468	ncRNA	-1.53362919331644	-1.50201671710775	-1.51157659084044	-1.08120497225282	-1.53141005593807	-1.49994505258991	-1.50941244497383	-1.51802371459528	-1.94474658522739	0.577200604274218	1
Merged-chr8-85035585-2	chr8	85035485	85035685	+	870.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1330.0	NM_145390	212999.0	Mm.220357	NM_145390	ENSMUSG00000031691	Tnpo2	1110034O24Rik|AA414969|AI464345|AI852433|IPO3|Knpb2b|Kpnb2b|TRN2	transportin 2 (importin 3, karyopherin beta 2b)	protein-coding	0.729678677808388	1.00014691331548	1.53992484563724	1.25334647449193	1.73977195156649	0.775467794833023	0.761693908359781	1.68742090968576	0.634767965007661	0.666208962204129	0.992515300319318
Merged-chr17-73972480-4	chr17	73972352	73972552	+	989.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22256.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-84916794-3	chr15	84916692	84916892	+	909.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVL-B4-int|LTR|ERVL	-6636.0	NM_016714	18141.0	Mm.28379	NM_016714	ENSMUSG00000016619	Nup50	1700030K07Rik|AI413123|Npap60	nucleoporin 50	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-121451744-1	chr2	121451644	121451844	+	674.0	f1_balb.idr	non-coding (NR_110986, exon 3 of 3)	non-coding (NR_110986, exon 3 of 3)	2546.0	NR_110986	378702.0	Mm.262252	NM_011354	ENSMUSG00000074884	Serf2	C80083|Msmac1l|m4F5rel	small EDRK-rich factor 2	protein-coding	0.514673390497674	0.244385064161667	0.236484878436784	0.230343788457114	0.64228263267427	0.638056827492992	0.238232975495322	1.25408521885567	2.88685469143101	0.137219085592826	1
Merged-chr1-37585144-2	chr1	37585044	37585244	+	588.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44128.0	NM_173870	269181.0	Mm.25861	NM_173870	ENSMUSG00000026110	Mgat4a	9530018I07Rik|GnT-IVa|glcNAc-T-IVa	mannoside acetylglucosaminyltransferase 4, isoenzyme A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-103860797-1	chr3	103860697	103860897	+	791.0	f1_c57bl6.idr	intron (NR_104070, intron 3 of 22)	intron (NR_104070, intron 3 of 22)	520.0	NM_008979	19260.0	Mm.395	NM_008979	ENSMUSG00000027843	Ptpn22	70zpep|PEP|Ptpn8	protein tyrosine phosphatase, non-receptor type 22 (lymphoid)	protein-coding	1.1003679286036	2.84775900408189	1.8519143901699	2.31355912813427	2.29971163711329	2.86983323300233	1.18484937793799	1.62674025194288	-0.0546085819356091	0.959869960269703	0.998431161219273
Merged-chr13-17982858-4	chr13	17982763	17982963	+	972.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10488.0	NM_025904	67008.0	Mm.252918	NM_025904	ENSMUSG00000075054	Yae1d1	1600012F09Rik	Yae1 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-137626655-2	chr5	137626555	137626755	+	554.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	AT_rich|Low_complexity|Low_complexity	-1577.0	NM_027708	71176.0	Mm.474695	NM_027708	ENSMUSG00000089984	Fbxo24	4933422D21Rik|Fbx24	F-box protein 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-113324184-1	chr7	113324084	113324284	+	917.0	f1_balb.idr	intron (NM_133700, intron 9 of 10)	intron (NM_133700, intron 9 of 10)	45155.0	NM_133700	68815.0	Mm.238034	NM_133700	ENSMUSG00000038187	Btbd10	1110056N09Rik|Gmrp1	BTB (POZ) domain containing 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-37779955-1	chr13	37779855	37780055	+	582.0	f0_balb.idr	Intergenic	Intergenic	-46083.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-87249230-4	chr17	87249220	87249420	+	730.616699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16627.0	NM_176808	193813.0	Mm.30251	NM_139295	ENSMUSG00000024150	Mcfd2	1810021C21Rik|F5f8d|Lman1ip|Sdnsf	multiple coagulation factor deficiency 2	protein-coding	3.64835800875272	2.83833231120224	2.87271059851569	2.33034372472379	4.04039813615526	4.25100806587402	3.02135158224907	3.13587410131752	1.08648141123316	0.0872841456995894	0.454134943670283
Merged-chr15-72972005-4	chr15	72971896	72972096	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029640, intron 8 of 21)	ORR1D2|LTR|ERVL-MaLR	83816.0	NM_029640	76510.0	Mm.158902	NM_029640	ENSMUSG00000047921	Trappc9	1810044A24Rik|2900005P22Rik|4632408O18Rik|Ibp|Nibp|TRS130|mKIAA1882	trafficking protein particle complex 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118764383-2	chr9	118764208	118764408	+	987.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 1 of 13)	intron (NM_001113514, intron 1 of 13)	52616.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	-0.0449764647771526	-0.676551426153641	-0.679985724554318	-0.682632732825465	-0.686369215928956	-0.311804295000892	-0.679228593419328	-0.682170477194314	-1.11559741451538	0.704087443525557	1
Merged-chr18-61399068-4	chr18	61398941	61399141	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133249, intron 1 of 11)	CpG	-1141.0	NR_029879	723889.0		NR_029879	ENSMUSG00000105200	Mir378a	Mir378|Mirn378|mmu-mir-378|mmu-mir-378a	microRNA 378a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81384824-4	chr10	81384730	81384930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133964, intron 1 of 4)	intron (NM_133964, intron 1 of 4)	402.0	NM_133964	102115.0	Mm.294975	NM_133964	ENSMUSG00000078440	Dohh	1110033C18Rik|AI585913|AL022869|Hlrc1	deoxyhypusine hydroxylase/monooxygenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34657500-4	chr17	34657394	34657594	+	899.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10348.0	NM_017406	12915.0	Mm.4068	NM_017406	ENSMUSG00000015461	Atf6b	AA617266|ATF6beta|Creb-rp|Crebl1	activating transcription factor 6 beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-49262590-4	chr6	49262412	49262612	+	722.854187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362188, intron 1 of 8)	intron (NM_001362188, intron 1 of 8)	1540.0	NM_001347209	101214.0	Mm.196598	NM_198102	ENSMUSG00000029817	Tra2a	1500010G04Rik|AL022798|G430041M01Rik|mAWMS1	transformer 2 alpha	protein-coding	0.18100270888515	0.418855704937524	-0.070787657729211	-0.0746348733252677	0.0637488139306135	0.548752549823419	-0.0696872999821543	-0.0739629855655497	0.134859792881157	0.950191496302516	1
Merged-chr16-30262304-3	chr16	30262207	30262407	+	748.233337	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027904, intron 1 of 1)	MIR|SINE|MIR	5225.0	NM_027904	71756.0	Mm.290614	NM_027904	ENSMUSG00000023176	Cpn2	1300018K11Rik	carboxypeptidase N, polypeptide 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-83650864-4	chr7	83650756	83650956	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360088, intron 15 of 18)	intron (NM_001360088, intron 15 of 18)	4639.0	NM_001360089	16170.0	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-74838596-4	chr11	74838492	74838692	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010813, intron 4 of 5)	CpG	7668.0	NM_010813	17428.0	Mm.3759	NM_010813	ENSMUSG00000000282	Mnt	Rox|bHLHd3	max binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-38231237-2	chr5	38231137	38231337	+	606.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025281, intron 6 of 8)	intron (NM_025281, intron 6 of 8)	10755.0	NM_025281	17089.0	Mm.28560	NM_025281	ENSMUSG00000067367	Lyar	MLZ-264	Ly1 antibody reactive clone	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-119137783-2	chr12	119137683	119137883	+	854.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	100493.0	NM_177290	320910.0	Mm.217000	NM_177290	ENSMUSG00000025321	Itgb8	4832412O06Rik	integrin beta 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-127142284-3	chr6	127142184	127142384	+	857.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009829, intron 3 of 4)	intron (NM_009829, intron 3 of 4)	-7105.0	NR_040274	77558.0	Mm.358918	NR_040273	ENSMUSG00000097166	9330179D12Rik	-	RIKEN cDNA 9330179D12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-116422926-3	chr3	116422834	116423034	+	906.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001173553, intron 1 of 13)	intron (NM_001173553, intron 1 of 13)	1098.0	NM_001080818	229776.0	Mm.17647	NM_001080818	ENSMUSG00000033502	Cdc14a	A830059A17Rik|CDC14A2|CDC14a1|Cdc14	CDC14 cell division cycle 14A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-43883131-4	chr5	43883020	43883220	+	871.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007646, intron 1 of 7)	intron (NM_007646, intron 1 of 7)	14311.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171150577-4	chr1	171150457	171150657	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008623)	promoter-TSS (NM_008623)	46.0	NM_025321	66052.0	Mm.198138	NM_025321	ENSMUSG00000058076	Sdhc	0610010E03Rik|AI316496|AU019277	succinate dehydrogenase complex, subunit C, integral membrane protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-23670843-4	chr9	23670752	23670952	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-427166.0	NM_175678	319239.0	Mm.130824	NM_175678	ENSMUSG00000043659	Npsr1	9330128H10Rik|GPRA|Gpr154|MVTR|PGR14|VRR1	neuropeptide S receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-148399917-4	chr5	148399816	148400016	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007513)	promoter-TSS (NM_007513)	-12.0	NM_007513	11987.0	Mm.275489	NM_007513	ENSMUSG00000041313	Slc7a1	4831426K01Rik|AI447493|Atrc-1|Atrc1|Cat1|Rec-1|Rev-1|mCAT-1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-50466971-2	chr17	50466872	50467072	+	891.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42575.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-42483583-2	chr19	42483483	42483683	+	790.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35222.0	NM_177464	52013.0	Mm.254169	NM_177464	ENSMUSG00000025184	R3hcc1l	1700036B12Rik|AI450607|C10orf28|D19Ertd386e|GIDRP86|Gidrp88	R3H domain and coiled-coil containing 1 like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-12423608-2	chr4	12423508	12423708	+	582.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-251593.0	NM_026558	68099.0	Mm.25340	NM_026558	ENSMUSG00000028218	Fam92a	6720467C03Rik|Fam92a1	family with sequence similarity 92, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-10838911-2	chr17	10838811	10839011	+	586.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027032, intron 1 of 4)	intron (NM_027032, intron 1 of 4)	1280.0	NM_027032	69310.0	Mm.18889	NM_027032	ENSMUSG00000037196	Pacrg	1700008H23Rik	PARK2 co-regulated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-136422643-2	chr6	136422580	136422780	+	842.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7111.0	NM_001201390	100502936.0	Mm.21182	NM_001201390	ENSMUSG00000045291	E330021D16Rik	C85549	RIKEN cDNA E330021D16 gene	protein-coding	1.81396491373201	2.57883534954626	1.65514956514561	2.495532612486	1.69836187795016	1.25359561401429	2.11059227644469	1.92074746588349	-1.09630663913242	0.272856059558686	0.776255217179526
Merged-chr8-110075633-1	chr8	110075533	110075733	+	675.0	f0_balb.idr	Intergenic	Intergenic	-4101.0	NM_175480	234725.0	Mm.87487	NM_175480	ENSMUSG00000044676	Zfp612	B230354B21Rik	zinc finger protein 612	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115058916-2	chr11	115058816	115059016	+	986.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_172050, intron 1 of 3)	intron (NM_172050, intron 1 of 3)	3123.0	NM_172050	217306.0	Mm.222667	NM_172050	ENSMUSG00000048498	Cd300e	BC034097|CLM2|Cd300le|TREM5	CD300E molecule	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-24773932-4	chr16	24773828	24774028	+	995.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 8 of 12)	AT_rich|Low_complexity|Low_complexity	52073.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-137719766-2	chr4	137719680	137719880	+	655.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081155, intron 15 of 24)	intron (NM_001081155, intron 15 of 24)	-4681.0	NR_138592	110351.0	Mm.180763	NM_029563	ENSMUSG00000041351	Rap1gap	1300019I11Rik|2310004O14Rik|AI427470|ARPP-90|Gap|Rap1GAP1|Rap1ga1	Rap1 GTPase-activating protein	protein-coding	2.09253667639878	2.09812547614281	2.15397150796095	1.28852664677604	2.10934680246771	2.11307213532577	2.17042318679485	2.31093506162041	0.580563739429588	0.539987344685409	0.954538084893753
Merged-chr1-136629574-4	chr1	136629470	136629670	+	871.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177643, exon 2 of 2)	3' UTR (NM_177643, exon 2 of 2)	4669.0	NM_001160251	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-125878191-4	chr7	125878078	125878278	+	887.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001101488)	TTS (NM_001101488)	170308.0	NM_001358287	233865.0	Mm.274389	NM_001081022	ENSMUSG00000032743	D430042O09Rik	Kiaa0556	RIKEN cDNA D430042O09 gene	protein-coding	1.52339541383085	1.48816602889947	1.84463334653788	2.86645828238972	1.53671384783238	3.08249411001995	1.44958250016915	2.21121696299432	0.386345736587994	0.704100128543223	0.998431161219273
Merged-chr14-75791224-4	chr14	75791132	75791332	+	840.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	-4195.0	NM_026232	67554.0	Mm.46067	NM_026232	ENSMUSG00000022003	Slc25a30	4933433D23Rik|AV025504|AV221431|AW319655|KMCP1	solute carrier family 25, member 30	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-60725929-2	chr13	60725810	60726010	+	799.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001285917, exon 13 of 27)	exon (NM_001285917, exon 13 of 27)	60454.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	-1.84446540621454	-1.66703209084435	-1.82297003008319	-1.83062437091832	-1.84230234211872	-1.6650127732569	-1.82086056797065	-1.82925424756847	0.037684011990387	0.991491645451152	1
Merged-chr16-32277639-6	chr16	32277566	32277766	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_027355, exon 1 of 6)	5' UTR (NM_027355, exon 1 of 6)	205.0	NM_027355	70238.0	Mm.228263	NM_027355	ENSMUSG00000014074	Rnf168	3110001H15Rik	ring finger protein 168	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-54933525-1	chr6	54933425	54933625	+	679.0	f0_balb.idr	intron (NM_001171007, intron 9 of 11)	intron (NM_001171007, intron 9 of 11)	38136.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101971972-3	chr15	101971853	101972053	+	846.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17666.0	NM_212487	332131.0	Mm.325105	NM_212487	ENSMUSG00000050463	Krt78	2310030B04Rik|Kb40	keratin 78	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-108994783-4	chr12	108994669	108994869	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177602, intron 4 of 6)	intron (NM_177602, intron 4 of 6)	73448.0	NM_001163175	380785.0	Mm.342085	NM_001163175	ENSMUSG00000040867	Begain	BM948371|Gm897	brain-enriched guanylate kinase-associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139280151-2	chr5	139280051	139280251	+	680.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172723, intron 5 of 10)	intron (NM_172723, intron 5 of 10)	26654.0	NM_001163316	67604.0	Mm.270137	NM_026269	ENSMUSG00000025858	Get4	1110007L15Rik|AW412535|Cee	golgi to ER traffic protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-23674456-2	chr17	23674358	23674558	+	891.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001008425)	promoter-TSS (NM_001008425)	-581.0	NM_001357380	386612.0	Mm.328831	NM_001008425	ENSMUSG00000041319	Thoc6	F830014G06Rik|Wdr58	THO complex 6	protein-coding	0.504112016503485	-0.110879673842373	0.4435282941711	-0.119439696228124	0.142766469664564	-0.109789181584451	-0.114648113350905	-0.118789028605863	-2.25972035444149	0.340029283485116	1
Merged-chr4-53352889-3	chr4	53352793	53352993	+	893.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR12E|LTR|ERVK	-82661.0	NR_033139	381524.0	Mm.23351	NM_001033454	ENSMUSG00000086712	AI427809	Gm1659	expressed sequence AI427809	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70791579-4	chr8	70791474	70791674	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199308, intron 1 of 25)	intron (NM_199308, intron 1 of 25)	859.0	NM_199308	546071.0	Mm.250731	NM_199308	ENSMUSG00000031833	Mast3	BC024265|mKIAA0561	microtubule associated serine/threonine kinase 3	protein-coding	5.0613193915785	3.82376004036428	4.58363502813756	5.20796482003196	5.04287563604738	4.27889459141444	5.04631683040489	5.39157564262989	0.270138494777788	0.493028042010262	0.935679785535167
Merged-chr7-44845727-2	chr7	44845627	44845827	+	828.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_001042655, intron 5 of 16)	PB1D10|SINE|Alu	3352.0	NM_001042655	233204.0	Mm.27567	NM_144924	ENSMUSG00000038520	Tbc1d17	BC017607	TBC1 domain family, member 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-32215695-2	chr19	32215595	32215795	+	731.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 5 of 9)	intron (NM_144792, intron 5 of 9)	-4682.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-84106596-4	chr17	84106454	84106654	+	778.108337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT2D|LTR|ERVL	27894.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-55106733-4	chr15	55106617	55106817	+	963.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045093, intron 4 of 4)	intron (NR_045093, intron 4 of 4)	-5600.0	NM_145470	97998.0	Mm.295397	NM_145470	ENSMUSG00000022419	Deptor	Depdc6	DEP domain containing MTOR-interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-50074092-1	chr11	50073992	50074192	+	691.0	f0_balb.idr	intron (NM_001290750, intron 3 of 7)	L1MDa|LINE|L1	4390.0	NR_029769	723845.0		NR_029769	ENSMUSG00000065417	Mir340	Mirn340|mir-340|mmu-mir-340	microRNA 340	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-142393533-1	chr3	142393433	142393633	+	548.0	f1_balb.idr	intron (NM_001190854, intron 1 of 12)	intron (NM_001190854, intron 1 of 12)	-1683.0	NM_001190857	56376.0	Mm.117709	NM_019808	ENSMUSG00000028273	Pdlim5	1110001A05Rik|AI987914|C87059|Enh|Enh1|Enh2|Enh3|LIM	PDZ and LIM domain 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-99488991-4	chr9	99488880	99489080	+	755.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028768, intron 18 of 21)	intron (NM_028768, intron 18 of 21)	18559.0	NR_028123	69797.0	Mm.307159	NR_028123	ENSMUSG00000046242	1600029I14Rik	-	RIKEN cDNA 1600029I14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-34177042-1	chr15	34176942	34177142	+	868.0	f1_balb.idr	Intergenic	RMER13B|LTR|ERVK	-60984.0	NM_033521	114128.0	Mm.197518	NM_033521	ENSMUSG00000022257	Laptm4b	C330023P13Rik|LAPTM4beta	lysosomal-associated protein transmembrane 4B	protein-coding	1.13797624055176	2.35182207530241	0.952204956927268	0.914043500136828	1.7693939024111	3.69168114944523	0.962709933668942	3.36041057790513	2.73132188430119	0.151665333645952	0.605081137137265
Merged-chr11-114683445-2	chr11	114683345	114683545	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_053273, intron 1 of 13)	intron (NM_053273, intron 1 of 13)	7977.0	NM_053273	117160.0	Mm.271934	NM_053273	ENSMUSG00000034714	Ttyh2	1110001A03Rik	tweety family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-21213111-4	chr5	21213036	21213236	+	800.55835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153365, intron 5 of 26)	MTD|LTR|ERVL-MaLR	26869.0	NM_001359877	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-32957212-2	chr19	32957112	32957312	+	972.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	199635.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100882476-1	chr7	100882376	100882576	+	630.0	f1_balb.idr	promoter-TSS (NR_037289)	promoter-TSS (NR_037289)	-67.0	NR_037289	100526508.0		NR_037289	ENSMUSG00000093296	Mir3102	mmu-mir-3102	microRNA 3102	ncRNA	0.793846054147607	0.661021358993585	0.648963680157281	0.639530218130246	1.46060915025097	1.36784603952951	1.52684529672539	1.13818510158237	4.06447854816864	0.00984269200067745	0.107879980472711
Merged-chr2-71378182-4	chr2	71378051	71378251	+	837.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-10597.0	NM_172436	78830.0	Mm.30928	NM_172436	ENSMUSG00000027010	Slc25a12	2610002D09Rik|AI839531|B230107K20Rik|BB129864	solute carrier family 25 (mitochondrial carrier, Aralar), member 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-34682744-3	chr19	34682672	34682872	+	951.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172838, intron 2 of 6)	Lx7|LINE|L1	41883.0	NM_008331	15957.0	Mm.439751	NM_008331	ENSMUSG00000034459	Ifit1	ISG56|Ifi56|P56	interferon-induced protein with tetratricopeptide repeats 1	protein-coding	-1.84371485578039	-1.81332821174849	-1.82251738371298	-1.83006564316449	-1.84158176955426	-1.81133687985023	-1.5312619047181	-1.82871450833159	1.60090129203521	0.64914985597185	1
Merged-chr18-66002709-4	chr18	66002610	66002810	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001172062)	promoter-TSS (NM_001172062)	-75.0	NM_001172062	70361.0	Mm.290857	NM_027400	ENSMUSG00000041891	Lman1	2610020P13Rik|AI326273|AU043785|C730041J05|ERGIC53|F5F8D|MCFD1|MR60|P58|gp58	lectin, mannose-binding, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-54482740-3	chr14	54482644	54482844	+	640.311096	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	6644.0	NM_080726	140743.0	Mm.274727	NM_080726	ENSMUSG00000022176	Rem2	AW411893	rad and gem related GTP binding protein 2	protein-coding	3.2099424785766	1.99839165267066	1.71179819174688	2.34820348590851	3.18386582656259	2.77130554234905	1.94654998164836	2.78722039595693	0.543201213120964	0.519866096331863	0.947641799425091
Merged-chr5-65867945-4	chr5	65867833	65868033	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081105, intron 1 of 2)	MER63D|DNA|hAT-Blackjack	4364.0	NM_001081105	74734.0	Mm.20323	NM_001081105	ENSMUSG00000029204	Rhoh	5830400A04Rik|AU019774|Arhh	ras homolog family member H	protein-coding	-0.983354778669562	-0.966688639067326	-0.65288278454293	-0.979893471840633	-0.9828406603328	-0.96412324170639	-0.515932523477808	-0.979528524534782	0.597587473242695	0.851047375827952	1
Merged-chr10-79704897-1	chr10	79704797	79704997	+	912.0	f0_c57.idr	intron (NM_001077184, intron 1 of 6)	intron (NM_001077184, intron 1 of 6)	539.0	NM_009768	12215.0	Mm.726	NM_009768	ENSMUSG00000023175	Bsg	AI115436|AI325119|CD147|EMMPRIN|HT-7	basigin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-64744205-2	chr17	64744105	64744305	+	834.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008549, intron 20 of 21)	intron (NM_008549, intron 20 of 21)	-22906.0	NR_105051	101202683.0	Mm.393309	NR_105051		Dreh	-	down-regulated in hepatocellular carcinoma	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-157156343-4	chr2	157156236	157156436	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011249, intron 19 of 21)	CT-rich|Low_complexity|Low_complexity	-21114.0	NM_018851	56045.0	Mm.248478	NM_018851	ENSMUSG00000027639	Samhd1	E330031J07Rik|Mg11	SAM domain and HD domain, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-50542780-2	chr6	50542680	50542880	+	777.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23694.0	NM_007808	13063.0	Mm.35389	NM_007808	ENSMUSG00000063694	Cycs	-	cytochrome c, somatic	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191878142-4	chr1	191878059	191878259	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28622.0	NM_009579	22782.0	Mm.9024	NM_009579	ENSMUSG00000037434	Slc30a1	AI839647|C130040I11Rik|Znt1	solute carrier family 30 (zinc transporter), member 1	protein-coding	2.86459524268168	2.37068685391979	3.10200491599469	1.89569915624784	2.47663870614808	2.66286779684207	3.05044691034073	1.69548271720874	-0.166148070648426	0.840185439561801	0.998431161219273
Merged-chr11-63091215-4	chr11	63091113	63091313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027660, intron 7 of 7)	intron (NM_027660, intron 7 of 7)	29554.0	NM_027660	71062.0	Mm.23534	NM_027660	ENSMUSG00000042189	Tekt3	4933407G07Rik	tektin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-12795594-4	chr15	12795505	12795705	+	743.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29052.0	NM_029998	77877.0	Mm.207311	NM_029998	ENSMUSG00000022195	6030458C11Rik	-	RIKEN cDNA 6030458C11 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-100463131-2	chr15	100463023	100463223	+	735.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5888.0	NM_001357983	68614.0	Mm.275272	NM_134093	ENSMUSG00000037353	Letmd1	1110019O13Rik|AI593524|BB130465|BB235638|HCCR-2|HCCR1|MCC-32|Mccr	LETM1 domain containing 1	protein-coding	1.76559810692396	2.20345094409891	0.768188651177792	1.46422349920074	1.69806760907699	0.791311873429788	0.772418072782113	0.755801163302638	-1.86646385645139	0.203132602498694	0.68946966048609
Merged-chr18-74442562-2	chr18	74442462	74442662	+	627.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_201600)	promoter-TSS (NM_201600)	-57.0	NM_201600	17919.0	Mm.260098	NM_008661	ENSMUSG00000025885	Myo5b	AI661750|mKIAA1119	myosin VB	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139393035-3	chr5	139392938	139393138	+	939.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001362206, exon 2 of 2)	exon (NM_001362206, exon 2 of 2)	3134.0	NM_001038703	80290.0	Mm.270003	NM_030258	ENSMUSG00000044197	Gpr146	BC003323|D830046C22Rik|PGR8	G protein-coupled receptor 146	protein-coding	2.37132944604541	1.60884310498371	2.08911639034592	1.92252974164727	1.93818165710342	1.79012779604241	1.14786963739547	1.34632459318886	-1.26277704118022	0.237751946009759	0.734370450805304
Merged-chr16-23314460-1	chr16	23314360	23314560	+	1000.0	f0_c57.idr	intron (NM_001252506, intron 1 of 6)	L1_Mus3|LINE|L1	23990.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-94413151-4	chr3	94413030	94413230	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357713)	promoter-TSS (NM_001357713)	-114.0	NM_001357713	72634.0	Mm.331198	NM_028307	ENSMUSG00000041912	Tdrkh	2700091C21Rik|Tdrd2	tudor and KH domain containing protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-59221597-1	chr12	59221497	59221697	+	581.0	f1_balb.idr	Intergenic	MT2B1|LTR|ERVL	-2114.0	NM_001033156	70611.0	Mm.311026	NM_001033156	ENSMUSG00000035329	Fbxo33	5730501N20Rik|AI642135	F-box protein 33	protein-coding	0.203804364729437	0.904116761255689	0.959338206891764	0.214538790149874	0.205410836094702	0.230989046140745	0.972827677624141	0.215659766873976	-0.888547658192966	0.663982522054815	1
Merged-chr14-7766070-2	chr14	7765970	7766170	+	556.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51887.0	NM_001081427	286940.0	Mm.489652	NM_134080	ENSMUSG00000025278	Flnb	AL024016|Fln-b	filamin, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-25849189-6	chr11	25849121	25849321	+	864.3425900000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027973, intron 2 of 5)	intron (NR_027973, intron 2 of 5)	-353019.0	NR_105791	102466154.0		NR_105791	ENSMUSG00000099015	Mir6372	Gm27358|mmu-mir-6372	microRNA 6372	ncRNA	2.67797950251226	3.18125776355914	2.68495916318177	2.20407352466928	2.78778146238656	2.79662468626382	2.70557359693061	3.16219998757648	0.280662873253723	0.687462303945133	0.996533206832645
Merged-chr3-100969726-4	chr3	100969608	100969808	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001013026)	promoter-TSS (NM_001013026)	-45.0	NM_001013026	74044.0	Mm.270961	NM_001013026	ENSMUSG00000033222	Ttf2	4632434F22Rik|8030447N19|AV218430	transcription termination factor, RNA polymerase II	protein-coding	1.7963330562188	1.49855532902145	4.16522994393855	4.32064063101825	1.81646260374297	2.97579394384621	3.79367953953501	2.63663215461038	-0.768308389529768	0.5688639896822	0.962718661854691
Merged-chr1-177726282-4	chr1	177726182	177726382	+	779.93335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR34D_MM|LTR|ERVK	-3532.0	NM_027077	69428.0	Mm.84467	NM_027077	ENSMUSG00000015962	1700016C15Rik	-	RIKEN cDNA 1700016C15 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-32730260-1	chr5	32730160	32730360	+	878.3333130000001	f1_balb.idr	Intergenic	Intergenic	16082.0	NM_001347332	320951.0	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-50238034-2	chr11	50237934	50238134	+	956.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001313968, intron 1 of 4)	intron (NM_001313968, intron 1 of 4)	498.0	NM_001313968	17001.0	Mm.245151	NM_008521	ENSMUSG00000020377	Ltc4s	-	leukotriene C4 synthase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97150424-4	chr6	97150311	97150511	+	794.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1528.0	NM_175313	101351.0	Mm.116802	NM_175313	ENSMUSG00000035245	Eogt	A130022J15Rik|AI447490|AW214473|AW259391|Aer61	EGF domain-specific O-linked N-acetylglucosamine (GlcNAc) transferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-44047979-4	chr14	44047819	44048019	+	952.275024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41501.0	NM_001011876	630952.0		NM_001011876	ENSMUSG00000072598	Ang6	EG630952	angiogenin, ribonuclease A family, member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129512332-4	chr2	129512262	129512462	+	988.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177653, intron 1 of 6)	L1_Mus2|LINE|L1	24240.0	NM_177653	228592.0	Mm.452175	NM_177653	ENSMUSG00000043727	F830045P16Rik	Sirpb3	RIKEN cDNA F830045P16 gene	protein-coding	4.75982968021368	5.89550571915565	5.46369856011164	5.17425392459392	6.29370535173241	6.17661183181916	5.88541028957463	5.80277221026803	0.767435271364194	0.00742636967537616	0.0883944279416302
Merged-chr15-100204775-4	chr15	100204675	100204875	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172819, intron 27 of 32)	intron (NM_172819, intron 27 of 32)	-16739.0	NR_037311	100499528.0		NR_037311	ENSMUSG00000092752	Mir3473a	Mir3473|mir-3473a|mmu-mir-3473|mmu-mir-3473a	microRNA 3473a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5131409-3	chr19	5131301	5131501	+	716.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-12993.0	NM_008451	16594.0	Mm.271648	NM_008451	ENSMUSG00000024862	Klc2	8030455F02Rik|AW212649|KLC 2|KLC-2	kinesin light chain 2	protein-coding	0.513515617679942	0.385643501994559	0.37764089375628	0.371433676017683	1.04828372718652	0.910703002740006	1.09111376315238	0.548857507987714	3.64411224681854	0.0394644788992289	1
Merged-chr18-80708197-4	chr18	80708141	80708341	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164112)	promoter-TSS (NM_001164112)	-68.0	NM_001164112	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-92639335-2	chr16	92639235	92639435	+	647.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111022, intron 5 of 6)	intron (NM_001111022, intron 5 of 6)	57994.0	NM_001111023	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115055877-2	chr11	115055777	115055977	+	553.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172050, intron 1 of 3)	intron (NM_172050, intron 1 of 3)	6162.0	NM_172050	217306.0	Mm.222667	NM_172050	ENSMUSG00000048498	Cd300e	BC034097|CLM2|Cd300le|TREM5	CD300E molecule	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-4544589-4	chr12	4544485	4544685	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME4b|LINE|L1	20472.0	NR_136891	102634330.0	Mm.402324	NR_136891	ENSMUSG00000112422	Gm31938	-	predicted gene, 31938	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-9439708-2	chr3	9439608	9439808	+	857.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133218, intron 8 of 8)	intron (NM_133218, intron 8 of 8)	36630.0	NR_015499	320088.0	Mm.212908	NR_015499	ENSMUSG00000097365	C030034L19Rik	A130044O20Rik	RIKEN cDNA C030034L19 gene	ncRNA	0.130507450058042	0.486916864667997	0.141631002716946	0.648844005468819	0.679054431045945	0.148301705726445	0.142830011143952	0.4330341205064	0.000391636861175981	0.999846422081323	1
Merged-chr3-116751336-3	chr3	116751268	116751468	+	851.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081326, intron 30 of 33)	B3|SINE|B2	-39088.0	NM_001362374	229782.0	Mm.190758	NM_144902	ENSMUSG00000027957	Slc35a3	2310050P13Rik	solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member 3	protein-coding	1.38977091215123	1.8252096013693	0.697433464371879	0.684560680874278	1.40428364672616	1.84227251245404	0.70106227698808	0.686830123107981	0.0402918562020354	0.979272396623955	0.998431161219273
Merged-chr4-95871366-3	chr4	95871263	95871463	+	745.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113412, intron 14 of 15)	intron (NM_001113412, intron 14 of 15)	95672.0	NR_045777	319247.0	Mm.473527	NM_175680	ENSMUSG00000044125	9530080O11Rik	-	RIKEN cDNA 9530080O11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46760905-3	chr19	46760814	46761014	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033569)	promoter-TSS (NM_033569)	-695.0	NM_033569	94219.0	Mm.306903	NM_033569	ENSMUSG00000064105	Cnnm2	AU015877|AW048635|Acdp2|Clp2	cyclin M2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-85185965-4	chr10	85185851	85186051	+	871.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007771)	promoter-TSS (NM_007771)	-897.0	NM_007771	12952.0	Mm.26237	NM_007771	ENSMUSG00000020038	Cry1	AU020726|AU021000|Phll1	cryptochrome 1 (photolyase-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125594979-4	chr6	125594886	125595086	+	927.491699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011708, intron 10 of 51)	MTD|LTR|ERVL-MaLR	42038.0	NM_011708	22371.0	Mm.22339	NM_011708	ENSMUSG00000001930	Vwf	6820430P06Rik|AI551257|B130011O06Rik|C630030D09|F8VWF|VWD	Von Willebrand factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126917702-3	chr8	126917597	126917797	+	970.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28224.0	NM_024214	67952.0	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-119247456-2	chr4	119247356	119247556	+	893.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001042411, exon 14 of 15)	exon (NM_001042411, exon 14 of 15)	-7985.0	NM_153105	242653.0	Mm.130701	NM_153105	ENSMUSG00000066058	Cldn19	-	claudin 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-112580092-2	chr12	112579992	112580192	+	587.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8692.0	NM_198411	70435.0	Mm.250193	NM_198411	ENSMUSG00000037679	Inf2	2610204M08Rik|AA589465|AW125550|EG629699	inverted formin, FH2 and WH2 domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-154540349-3	chr3	154540223	154540423	+	923.888855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56388.0	NM_009968	12972.0	Mm.374855	NM_009968	ENSMUSG00000028199	Cryz	Sez9	crystallin, zeta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-190168906-2	chr1	190168791	190168991	+	618.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008937, intron 1 of 4)	intron (NM_008937, intron 1 of 4)	624.0	NM_001360827	19130.0	Mm.132579	NM_008937	ENSMUSG00000010175	Prox1	A230003G05Rik|PROX-1	prospero homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81403424-2	chr10	81403324	81403524	+	811.833374	f1_balb.idr|f1_c57bl6.idr	exon (NM_008688, exon 9 of 10)	exon (NM_008688, exon 9 of 10)	-6151.0	NR_152732	102634174.0	Mm.392213	NR_152732	ENSMUSG00000085327	Gm16104	-	predicted gene 16104	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-5056882-2	chr7	5056782	5056982	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_146178, exon 1 of 5)	5' UTR (NM_146178, exon 1 of 5)	156.0	NM_146178	232821.0	Mm.482157	NM_146178	ENSMUSG00000035228	Ccdc106	BC018462	coiled-coil domain containing 106	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-142702093-2	chr2	142701993	142702193	+	550.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355123, intron 23 of 26)	intron (NM_001355123, intron 23 of 26)	199371.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5954728-2	chr19	5954628	5954828	+	829.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164057, intron 5 of 17)	intron (NM_001164057, intron 5 of 17)	9478.0	NM_001164057	18969.0	Mm.209931	NM_008893	ENSMUSG00000024833	Pola2	AI573378	polymerase (DNA directed), alpha 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-89035732-4	chr11	89035620	89035820	+	944.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25028.0	NM_019505	56077.0	Mm.153695	NM_019505	ENSMUSG00000000276	Dgke	C87606|DAGK6|DGK	diacylglycerol kinase, epsilon	protein-coding	4.49363071121923	4.76433521937697	3.90855370453257	4.50596861830587	2.89434196282007	2.29618216541436	1.6432210559303	2.81362029890055	-2.91192198899184	7.09797839920051e-07	4.89434165710389e-05
Merged-chr9-123563786-4	chr9	123563693	123563893	+	974.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357485, intron 7 of 19)	intron (NM_001357485, intron 7 of 19)	34040.0	NM_030692	83493.0	Mm.273671	NM_030692	ENSMUSG00000025240	Sacm1l	SAC1|Sac1p|mKIAA0851	SAC1 suppressor of actin mutations 1-like (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-57765966-4	chr9	57765851	57766051	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007713)	promoter-TSS (NM_007713)	-91.0	NM_007713	102414.0	Mm.25720	NM_007713	ENSMUSG00000032316	Clk3	AI256811	CDC-like kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-132756429-4	chr3	132756319	132756519	+	918.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163455, intron 22 of 25)	intron (NM_001163455, intron 22 of 25)	72275.0	NM_001163455	271981.0	Mm.257864	NM_173032	ENSMUSG00000028030	Tbck	1700120J03Rik|9430001M19|A630047E20Rik|C030007I09Rik|Tbckl	TBC1 domain containing kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-109439437-3	chr3	109439328	109439528	+	837.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020505, intron 2 of 26)	intron (NM_020505, intron 2 of 26)	98745.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	1.37488196466658	0.867246950552439	1.05853971903435	1.66014829246764	1.38704248886737	1.43672205301246	1.7307560968395	0.844326187003215	0.404370327850334	0.76155786309278	0.998431161219273
Merged-chr9-118638857-4	chr9	118638772	118638972	+	965.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 4 of 27)	intron (NM_133721, intron 4 of 27)	32163.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-12178463-3	chr18	12178355	12178555	+	919.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029623, intron 5 of 19)	intron (NM_029623, intron 5 of 19)	9725.0	NM_029623	76482.0	Mm.196596	NM_029623	ENSMUSG00000024410	3110002H16Rik	2400010D15Rik|Mic-1|Mic1|Rmc1|Wdr98	RIKEN cDNA 3110002H16 gene	protein-coding	2.74109959177952	2.39130254736522	2.30988648779861	2.80341101944659	3.10233417690833	3.1795855104899	2.46954569636086	1.45246944976573	0.276056495173622	0.739270304129488	0.998431161219273
Merged-chr9-85465430-2	chr9	85465330	85465530	+	950.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-138280.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71475894-2	chr8	71475794	71475994	+	556.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001164679)	TTS (NM_001164679)	6700.0	NR_122114	66498.0	Mm.260360	NM_025600	ENSMUSG00000074247	Dda1	1500034J01Rik|1700095J19Rik|R74921	DET1 and DDB1 associated 1	protein-coding	-1.84249666652287	-1.81280314203583	-1.821782708929	-1.8291587925341	-1.69912265473888	-1.81085723243092	-1.81974993181089	-1.68654889582706	1.42917657148143	0.685329973313288	1
Merged-chr8-84782887-3	chr8	84782788	84782988	+	656.444458	f0_balb.idr|f1_balb.idr	intron (NM_001081982, intron 1 of 9)	intron (NM_001081982, intron 1 of 9)	-8519.0	NM_001297601	18032.0	Mm.9394	NM_010906	ENSMUSG00000001911	Nfix	CTF|NF-I/X|NF1-X|NFI-X	nuclear factor I/X	protein-coding	-0.776777079575578	-0.763820002747867	-0.76803283027006	-0.771304379054401	-0.60771607870347	0.15596626512538	-0.767101006295594	-0.770731500132408	3.48076419457237	0.209957824408988	1
Merged-chr1-183623480-4	chr1	183623412	183623612	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-125465.0	NR_151520	102637191.0	Mm.417076	NR_151520	ENSMUSG00000103305	Gm34068	-	predicted gene, 34068	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-94614478-4	chr4	94614390	94614590	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290568)	promoter-TSS (NM_001290568)	-1.0	NM_001290568	67694.0	Mm.240619	NM_026319	ENSMUSG00000028576	Ift74	1700029H06Rik|Ccdc2|Cmg1|b2b796Clo	intraflagellar transport 74	protein-coding	5.02125589316148	4.66805935332767	4.9443031734268	3.86069994372893	4.06674916071893	5.12566502203904	3.84614497346027	4.32183975679695	-0.340457487577972	0.435087988642278	0.907227265855066
Merged-chr17-34349110-2	chr17	34349010	34349210	+	940.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	-4465.0	NM_010381	100504404.0	Mm.15680	NM_010381		H2-Ea-ps	AI323765|E-alpha-f|H-2Ea|H2-Ea|I-Ealpha|Ia-3|Ia3|MHC-H2-Ea	histocompatibility 2, class II antigen E alpha, pseudogene	protein-coding	3.41523896566467	1.46289870547062	3.42148261305916	2.22421489844053	2.6857760941733	1.47345061783259	3.09735524806528	2.62593459313851	-0.518567696440564	0.569275572320979	0.962718661854691
Merged-chr13-12058614-6	chr13	12058514	12058714	+	999.194458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023868, intron 1 of 104)	intron (NM_023868, intron 1 of 104)	48331.0	NM_023868	20191.0	Mm.239871	NM_023868	ENSMUSG00000021313	Ryr2	9330127I20Rik|RYR-2	ryanodine receptor 2, cardiac	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81350570-4	chr10	81350466	81350666	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010440)	promoter-TSS (NM_010440)	-109.0	NM_001163166	15353.0	Mm.38474	NM_010440	ENSMUSG00000020232	Hmg20b	AW610687|BRAF35|Hmgx2|Hmgxb2|Smarce1r	high mobility group 20B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-105687612-4	chr3	105687513	105687713	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017397)	promoter-TSS (NM_017397)	-42.0	NM_017397	53975.0	Mm.272826	NM_017397	ENSMUSG00000027905	Ddx20	GEMIN3|dp103	DEAD (Asp-Glu-Ala-Asp) box polypeptide 20	protein-coding	6.40960276982651	6.20420652189279	7.35901150532629	6.85697602753636	6.28317601500058	6.34292055121302	7.14923565755238	6.56398890325849	-0.161829076546613	0.535880829613658	0.953271453054957
Merged-chr16-10846657-4	chr16	10846542	10846742	+	696.950012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11583.0	NM_001162932	223970.0	Mm.325777	NM_001033278	ENSMUSG00000037991	Rmi2	A630055G03Rik|Gm537|Gm929	RecQ mediated genome instability 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-75818278-4	chr12	75818195	75818395	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001005510)	promoter-TSS (NM_001005510)	-23.0	NM_001005510	319565.0	Mm.26652	NM_001005510	ENSMUSG00000063450	Syne2	6820443O06Rik|AW546258|Cpfl8|D12Ertd777e|KASH2|NUA|Nesp2g|dice|mKIAA1011	spectrin repeat containing, nuclear envelope 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-85937039-4	chr5	85936864	85937064	+	816.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	128619.0	NM_001345902	12617.0	Mm.4649	NM_007683	ENSMUSG00000029253	Cenpc1	CENP-C|Cenpc	centromere protein C1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88023482-2	chr3	88023382	88023582	+	806.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_022031, intron 5 of 6)	CpG-9271	4029.0	NM_022031	73940.0	Mm.294467	NM_022031	ENSMUSG00000004894	Hapln2	4930401E20Rik|Bral1	hyaluronan and proteoglycan link protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83647232-3	chr6	83647131	83647331	+	788.355591	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016751, intron 4 of 6)	intron (NM_016751, intron 4 of 6)	8885.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-48619251-3	chr2	48619175	48619375	+	872.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-194834.0	NM_007396	11480.0	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-39535682-4	chr1	39535574	39535774	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028043)	promoter-TSS (NM_028043)	-27.0	NM_028043	52846.0	Mm.259421	NM_028043	ENSMUSG00000003135	Cnot11	2410015L18Rik|C40|D1Bwg0212e	CCR4-NOT transcription complex, subunit 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-147742724-4	chr5	147742643	147742843	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16755.0	NM_010228	14254.0	Mm.389712	NM_010228	ENSMUSG00000029648	Flt1	AI323757|Flt-1|VEGFR-1|VEGFR1|sFlt1	FMS-like tyrosine kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-90057859-4	chr13	90057721	90057921	+	978.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028012, intron 3 of 7)	Charlie24|DNA|hAT-Charlie	31787.0	NM_028012	108138.0	Mm.37531	NM_028012	ENSMUSG00000021615	Xrcc4	2310057B22Rik|AW413319|AW545101	X-ray repair complementing defective repair in Chinese hamster cells 4	protein-coding	2.49496830197391	1.46314638289692	2.83544373336498	1.36714802136269	3.28817135111869	3.41155349790373	2.33623271882633	3.71081402221681	1.96793436301581	0.0192320323337911	0.175161379509736
Merged-chr1-37566470-2	chr1	37566370	37566570	+	801.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25454.0	NM_173870	269181.0	Mm.25861	NM_173870	ENSMUSG00000026110	Mgat4a	9530018I07Rik|GnT-IVa|glcNAc-T-IVa	mannoside acetylglucosaminyltransferase 4, isoenzyme A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-88669779-2	chr8	88669675	88669875	+	722.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145857, intron 4 of 12)	intron (NM_145857, intron 4 of 12)	22428.0	NM_145857	257632.0	Mm.222633	NM_145857	ENSMUSG00000055994	Nod2	ACUG|BLAU|CD|Card15|F830032C23Rik|IBD1|Nlrc2	nucleotide-binding oligomerization domain containing 2	protein-coding	1.57064043953141	0.785004403635439	1.53658871473598	0.761240852454492	1.30963691158203	0.787977884955644	1.65373428700792	1.12248333723514	0.104228063760853	0.94278556681433	0.998431161219273
Merged-chr15-48217081-2	chr15	48216981	48217181	+	831.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081391, intron 10 of 70)	RMER13B|LTR|ERVK	574908.0	NM_001081391	239420.0	Mm.309363	NM_001081391	ENSMUSG00000022311	Csmd3	4930500N14Rik|mKIAA1894	CUB and Sushi multiple domains 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28386321-2	chr17	28386221	28386421	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21105.0	NM_021478	22157.0	Mm.42102	NM_021478	ENSMUSG00000037446	Tulp1	Tulp1l	tubby like protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122575375-3	chr8	122575300	122575500	+	708.904724	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009698, intron 3 of 4)	intron (NM_009698, intron 3 of 4)	1507.0	NM_009698	11821.0	Mm.1786	NM_009698	ENSMUSG00000006589	Aprt	C85684	adenine phosphoribosyl transferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-59555644-2	chr11	59555544	59555744	+	720.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153314, intron 5 of 9)	intron (NR_153314, intron 5 of 9)	12958.0	NR_153314	216799.0	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85452387-2	chr12	85452322	85452522	+	763.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21468.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-188811797-2	chr1	188811697	188811897	+	629.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021408, intron 50 of 70)	intron (NM_021408, intron 50 of 70)	196043.0	NM_001359577	226823.0	Mm.209880	NM_172650	ENSMUSG00000026608	Kctd3	4930438A20Rik|9330185B06|E330032J19Rik|NY-REN-45	potassium channel tetramerisation domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88537563-2	chr3	88537463	88537663	+	680.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001029890, exon 2 of 2)	3' UTR (NM_001029890, exon 2 of 2)	-1181.0	NR_035434	100316808.0		NR_035434	ENSMUSG00000084728	Mir1905	Mirn1905|mmu-mir-1905	microRNA 1905	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-40322035-4	chr1	40321929	40322129	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2560.0	NM_001356478	107527.0	Mm.155583	NM_133193	ENSMUSG00000070942	Il1rl2	AI481289|AW551444|IL-1Rrp2	interleukin 1 receptor-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-116335908-2	chr7	116335808	116336008	+	626.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-1718.0	NM_026533	68052.0	Mm.14798	NM_026533	ENSMUSG00000090862	Rps13	2700063M04Rik	ribosomal protein S13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-38602349-4	chr15	38602277	38602477	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB7|LINE|L1	-7443.0	NR_045757	69679.0	Mm.416890	NR_045757	ENSMUSG00000102106	2310043O21Rik	-	RIKEN cDNA 2310043O21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-55622885-2	chr4	55622785	55622985	+	843.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-90410.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	1.32282875034672	0.70278227104944	0.689896049534152	1.59893242693565	0.665280221904761	1.28183729749412	1.57999790793774	0.879918370094377	0.0284860012935107	0.985030207535836	0.998431161219273
Merged-chr7-31059676-2	chr7	31059576	31059776	+	989.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144556)	promoter-TSS (NM_144556)	-259.0	NM_144556	243914.0	Mm.389870	NM_144556	ENSMUSG00000036560	Lgi4	Lgil3|clp	leucine-rich repeat LGI family, member 4	protein-coding	-1.36245527554381	-1.47758440807466	-1.48704571646499	-1.19707836829368	-1.50667469222183	-1.47553410307769	-1.4849038836314	-1.49342636832094	-1.86907304515541	0.591535440840713	1
Merged-chr4-53105320-2	chr4	53105220	53105420	+	893.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 7 of 49)	intron (NM_013454, intron 7 of 49)	54575.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-170844642-3	chr1	170844562	170844762	+	879.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081304, intron 4 of 15)	L1MC4|LINE|L1	23109.0	NM_001081304	226641.0	Mm.377046	NM_001081304	ENSMUSG00000026663	Atf6	9130025P16Rik|9630036G24|AA789574|Atf6alpha|ESTM49	activating transcription factor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-56200843-3	chr9	56200741	56200941	+	623.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_172924)	TTS (NM_172924)	-39771.0	NM_019793	56434.0	Mm.28484	NM_019793	ENSMUSG00000032324	Tspan3	1700055K04Rik|TM4-A|Tm4sf8	tetraspanin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-41159137-3	chr9	41159023	41159223	+	753.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1061.0	NM_176860	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84689799-1	chr8	84689699	84689899	+	583.0	f1_c57bl6.idr	exon (NM_001164560, exon 2 of 17)	exon (NM_001164560, exon 2 of 17)	552.0	NM_198020	212528.0	Mm.275720	NM_198020	ENSMUSG00000001909	Trmt1	6720406L13Rik|6720477L24|D8Ertd812e	tRNA methyltransferase 1	protein-coding	1.23412738929871	1.07116008850439	0.393196691907134	1.07737772012714	0.376024927329976	0.404315914421329	0.595856582965265	0.387363192110168	-3.69528371838301	0.0432243214310704	1
Merged-chr13-113882839-2	chr13	113882739	113882939	+	641.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172595, intron 1 of 4)	intron (NM_172595, intron 1 of 4)	88331.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-19162742-1	chr8	19162642	19162842	+	601.333313	f1_balb.idr	Intergenic	Intergenic	4855.0	NM_153115	78128.0	Mm.229357	NM_153115	ENSMUSG00000079842	Spag11a	9230111C08Rik|Bin1b|EP2Q|EP2e|Spag11	sperm associated antigen 11A	protein-coding	0.388691480755552	0.0792692994986942	0.075289706376751	0.0722516014563328	0.396233737895312	0.0801728720192287	0.572468469524197	0.337050173000077	1.79168836526761	0.396923339126421	1
Merged-chr2-26133091-4	chr2	26132960	26133160	+	975.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6483.0	NM_001256522	109299.0	Mm.389259	NM_001256521		Tmem250-ps	AI551216|C330006A16Rik	transmembrane protein 250, pseudogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-99386064-4	chr11	99385944	99386144	+	999.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010660, exon 7 of 8)	exon (NM_010660, exon 7 of 8)	3320.0	NM_010660	16661.0	Mm.22662	NM_010660	ENSMUSG00000019761	Krt10	D130054E02Rik|K10|K1C1|Krt-1.10|Krt1-10	keratin 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127340719-2	chr10	127340619	127340819	+	609.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_010296, intron 2 of 12)	intron (NM_010296, intron 2 of 12)	860.0	NM_010296	14632.0	Mm.391450	NM_010296	ENSMUSG00000025407	Gli1	AV235269|Zfp-5|Zfp5	GLI-Kruppel family member GLI1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-80116949-2	chr12	80116852	80117052	+	762.916626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3939.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	1.52014280227876	2.08188931685185	1.16112208544708	3.09919857899625	1.98006809795096	2.78790021256311	1.16901253026168	2.21341371803631	-0.0971879291394921	0.928683631527456	0.998431161219273
Merged-chr2-167376344-4	chr2	167376240	167376440	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27162.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-113854738-3	chr5	113854622	113854822	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011779, intron 3 of 10)	intron (NM_011779, intron 3 of 10)	-24221.0	NM_009151	20345.0	Mm.332590	NM_009151	ENSMUSG00000048163	Selplg	CD162|Psgl-1|Psgl1|Selp1|Selpl	selectin, platelet (p-selectin) ligand	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-108761739-3	chr9	108761662	108761862	+	766.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34232.0	NM_029634	76500.0	Mm.276336	NM_029634	ENSMUSG00000032599	Ip6k2	1500005N04Rik|AW050208|Ihpk2	inositol hexaphosphate kinase 2	protein-coding	2.16588509240007	1.92024186557467	1.48327623336629	2.37923242401169	1.39565937053386	1.53721736112809	2.64074869745292	2.47781868014853	0.265217391908301	0.790573331456899	0.998431161219273
Merged-chr4-9144286-3	chr4	9144224	9144424	+	744.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-124969.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-92482787-2	chr2	92482687	92482887	+	917.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22269.0	NM_145832	228368.0	Mm.273990	NM_145832	ENSMUSG00000049922	Slc35c1	E430007K15Rik|fuct1	solute carrier family 35, member C1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-155281718-2	chr1	155281618	155281818	+	912.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011273, intron 14 of 14)	intron (NM_011273, intron 14 of 14)	123015.0	NM_021433	58244.0	Mm.66264	NM_021433	ENSMUSG00000026470	Stx6	2310039E05Rik|2410005I16Rik|AA437559|AI415714|AI845861	syntaxin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-163968821-2	chr2	163968722	163968922	+	605.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26375.0	NM_018753	54401.0	Mm.34319	NM_018753	ENSMUSG00000018326	Ywhab	1300003C17Rik|14-3-3b	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	protein-coding	1.51742123904515	1.60498966814225	1.26599614107925	0.869389113681062	1.42797340675708	1.94618111199122	1.27569036224404	0.871444814192753	0.357191312750678	0.784206020223215	0.998431161219273
Merged-chr17-56583274-3	chr17	56583159	56583359	+	832.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029979, intron 1 of 20)	intron (NM_001029979, intron 1 of 20)	1326.0	NM_001029979	224902.0	Mm.214973	NM_001029979	ENSMUSG00000042625	Safb2	AA389433|AI255170|mKIAA0138	scaffold attachment factor B2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24718324-1	chr17	24718224	24718424	+	586.0	f1_c57bl6.idr	promoter-TSS (NM_026205)	promoter-TSS (NM_026205)	-267.0	NM_026205	67504.0	Mm.46159	NM_026205	ENSMUSG00000008482	Rnf151	1700010O16Rik|AV047371	ring finger protein 151	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-94038005-2	chr8	94037905	94038105	+	634.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026623)	promoter-TSS (NM_026623)	807.0	NM_001093757	270086.0	Mm.251085	NM_177767	ENSMUSG00000033009	Ogfod1	4930415J21Rik|AA387199|AA939912|AW061076|mKIAA1612	2-oxoglutarate and iron-dependent oxygenase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-34796371-2	chr11	34796271	34796471	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC4|LINE|L1	-12466.0	NM_033374	94176.0	Mm.380679	NM_033374	ENSMUSG00000020143	Dock2	AI662014|AW122239|CED-5|Hch|MBC	dedicator of cyto-kinesis 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-46133101-2	chr17	46133001	46133201	+	618.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029338, intron 4 of 4)	intron (NM_029338, intron 4 of 4)	11097.0	NM_029338	75564.0	Mm.17993	NM_029338	ENSMUSG00000023966	Rsph9	1700027N10Rik	radial spoke head 9 homolog (Chlamydomonas)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-18271949-2	chr14	18271847	18272047	+	834.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025586)	promoter-TSS (NM_025586)	811.0	NM_023526	69721.0	Mm.25648	NM_023526	ENSMUSG00000021772	Nkiras1	2400004O09Rik|KBRAS1|kappaB-Ras1	NFKB inhibitor interacting Ras-like protein 1	protein-coding	1.99032427639625	1.89054436667331	2.77677500976168	2.09441533724529	2.12689179436112	2.8083670575226	2.52880809554768	1.79332476691096	0.292041927255425	0.737421075397715	0.998431161219273
Merged-chr11-106483140-2	chr11	106483040	106483240	+	869.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_023913, intron 1 of 21)	L1MB8|LINE|L1	4656.0	NM_023913	78943.0	Mm.340943	NM_023913	ENSMUSG00000020715	Ern1	9030414B18Rik|AI225830|C85377|Ire1a|Ire1alpha|Ire1p	endoplasmic reticulum (ER) to nucleus signalling 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126824398-1	chr7	126824298	126824498	+	550.0	f1_c57bl6.idr	promoter-TSS (NM_001146347)	promoter-TSS (NM_001146347)	-255.0	NM_001146347	68952.0	Mm.440393	NM_026884	ENSMUSG00000058966	Fam57b	1500016O10Rik|A330104J06Rik|AI413816|AW060769	family with sequence similarity 57, member B	protein-coding	-1.09275713801584	-1.07137394485192	-0.908118492192355	-1.08944348393146	-1.09226475929859	-1.0689147209651	-1.08015323825198	-0.546193876133101	1.70350292213763	0.597391873441718	1
Merged-chr2-145903283-4	chr2	145903194	145903394	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001141965)	promoter-TSS (NM_001141965)	53.0	NM_001141965	67877.0	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	3.0077227544659	3.74910870564245	2.61522354540064	3.08864940240569	2.54267633124618	3.95248899626875	3.11129179824592	1.52428562768809	-0.184150981740454	0.811510158888877	0.998431161219273
Merged-chr2-32917728-4	chr2	32917636	32917836	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146119, intron 5 of 13)	intron (NM_146119, intron 5 of 13)	41602.0	NM_146119	227737.0	Mm.301646	NM_146119	ENSMUSG00000026796	Fam129b	9130404D14Rik	family with sequence similarity 129, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4067267-2	chr19	4067167	4067367	+	594.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7820.0	NM_001362043	225884.0	Mm.440201	NM_144869	ENSMUSG00000058216	Gstp3	-	glutathione S-transferase pi 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-118376788-2	chr6	118376688	118376888	+	691.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1A|DNA|hAT-Charlie	42629.0	NM_194339	213895.0	Mm.25269	NM_194339	ENSMUSG00000030138	Bms1	AA408648|AU020092|AU043373|BB007109|BC030906|Bms1l|mKIAA0187	BMS1, ribosome biogenesis factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-50352999-2	chr6	50352899	50353099	+	864.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001347213, exon 4 of 24)	exon (NM_001347213, exon 4 of 24)	29838.0	NM_027881	71720.0	Mm.44153	NM_027881	ENSMUSG00000029822	Osbpl3	1200014M06Rik|6720421I08Rik|A530055M08|ORP-3|ORP3|OSBP3	oxysterol binding protein-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-118487171-3	chr7	118487107	118487307	+	905.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001033380, exon 1 of 1)	3' UTR (NM_001033380, exon 1 of 1)	4768.0	NM_001033380	319622.0	Mm.323386	NM_001033380	ENSMUSG00000095115	Itpripl2	C130081G24|E030018N11Rik	inositol 1,4,5-triphosphate receptor interacting protein-like 2	protein-coding	3.55369918027556	2.53413044536152	1.69144552764657	2.61346992889879	3.40284240835081	1.4658663242805	1.94215403210597	3.22474053348199	-0.0214229004239214	0.981164174607302	0.998431161219273
Merged-chr4-11007794-4	chr4	11007708	11007908	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175175)	promoter-TSS (NM_175175)	-189.0	NM_175175	71801.0	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126194340-4	chr7	126194238	126194438	+	924.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028816, intron 1 of 23)	intron (NM_028816, intron 1 of 23)	6163.0	NM_001311143	74204.0	Mm.235663	NM_028816	ENSMUSG00000000131	Xpo6	2610005L19Rik|AL022631|C230091E20Rik|R75304|Ranbp20|exp6|mKIAA0370	exportin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-137948775-1	chr3	137948675	137948875	+	757.0	f1_c57bl6.idr	intron (NM_011932, intron 4 of 8)	intron (NM_011932, intron 4 of 8)	30220.0	NM_019920	56692.0	Mm.331392	NM_019920	ENSMUSG00000091512	Lamtor3	AW556229|Map2k1ip1|Mapbp|Mapksp1|Mp1	late endosomal/lysosomal adaptor, MAPK and MTOR activator 3	protein-coding	1.27401163142804	1.89847395000272	1.95481420266568	1.78225039625581	1.70626920408145	1.15512620743714	2.26978876230658	1.90852691131679	0.223843322821076	0.836567935320388	0.998431161219273
Merged-chr14-25420970-2	chr14	25420870	25421070	+	579.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38215.0	NM_001310666	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-69719564-4	chr2	69719464	69719664	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15-int|LTR|ERVL	-3524.0	NM_001081086	228005.0	Mm.11815	NM_001081086	ENSMUSG00000042133	Ppig	AU019516|AU022200|B230312B02Rik|CYP|SRCyp	peptidyl-prolyl isomerase G (cyclophilin G)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-10129848-4	chr14	10129731	10129931	+	947.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360141, intron 5 of 9)	intron (NM_001360141, intron 5 of 9)	245736.0	NR_030680	100042415.0	Mm.235938	NR_030680	ENSMUSG00000089686	Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-41709664-2	chr13	41709564	41709764	+	617.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	103448.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-118141094-2	chr14	118140994	118141194	+	671.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021434, intron 2 of 8)	intron (NM_021434, intron 2 of 8)	3967.0	NM_021434	58245.0	Mm.275411	NM_021434	ENSMUSG00000022131	Gpr180	AB041545|E130016I23Rik|Itr	G protein-coupled receptor 180	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-60286761-4	chr10	60286639	60286839	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146124, intron 1 of 13)	intron (NM_001146124, intron 1 of 13)	2278.0	NM_001146124	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-58374360-2	chr3	58374260	58374460	+	658.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40360.0	NM_001081229	72033.0	Mm.218409	NM_001081229	ENSMUSG00000027806	Tsc22d2	1810043J12Rik|5530402M19Rik	TSC22 domain family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-49777703-2	chr7	49777603	49777803	+	802.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133740)	promoter-TSS (NM_133740)	-655.0	NM_133740	71974.0	Mm.33202	NM_133740	ENSMUSG00000030505	Prmt3	2010005E20Rik|2410018A17Rik|AL033309|Hrmt1l3	protein arginine N-methyltransferase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-113805520-4	chr9	113805421	113805621	+	900.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286603, intron 1 of 4)	intron (NM_001286603, intron 1 of 4)	-7065.0	NM_001286601	76499.0	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-88067913-4	chr6	88067822	88068022	+	988.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D11|SINE|Alu	-16551.0	NM_133933	103963.0	Mm.188544	NM_133933	ENSMUSG00000030062	Rpn1	AU018702|D6Wsu137e|Rpn-1	ribophorin I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-106401063-4	chr1	106400975	106401175	+	923.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	145556.0	NR_106164	102466254.0		NR_106164	ENSMUSG00000098344	Mir3473f	Gm27846|mmu-mir-3473f	microRNA 3473f	ncRNA	2.88835325695487	2.8148647388382	2.83580745788858	3.93303972720846	2.62497084010288	1.60768145033587	2.4500711671442	3.72330229975433	-0.636386076946225	0.415367974523648	0.896676881011847
Merged-chr2-168979927-4	chr2	168979849	168980049	+	838.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	1680.0	NR_040326	75508.0	Mm.271256	NR_040326	ENSMUSG00000086348	1700017J07Rik	-	RIKEN cDNA 1700017J07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-78009839-4	chr10	78009750	78009950	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008826)	promoter-TSS (NM_008826)	-43.0	NM_001358793	18641.0	Mm.269649	NM_008826	ENSMUSG00000020277	Pfkl	AA407869|ATP-PFK|PFK-B|PFK-L	phosphofructokinase, liver, B-type	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-62320954-2	chr10	62320854	62321054	+	664.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_010438, intron 4 of 21)	intron (NM_010438, intron 4 of 21)	19467.0	NM_001146100	15275.0	Mm.196605	NM_010438	ENSMUSG00000037012	Hk1	BB404130|Hk-1|Hk1-s|dea|mHk1-s	hexokinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70020896-4	chr11	70020794	70020994	+	969.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007864, intron 1 of 19)	intron (NM_007864, intron 1 of 19)	2289.0	NM_007864	13385.0	Mm.27256	NM_007864	ENSMUSG00000020886	Dlg4	Dlgh4|PSD-95|PSD95|SAP90|SAP90A	discs large MAGUK scaffold protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-54590393-2	chr3	54590354	54590554	+	819.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	-102361.0	NR_152185	56790.0	Mm.486375	NM_019995	ENSMUSG00000027751	Supt20	AA667204|AI450544|D3Ertd300e|Fam48a|Supt20h|p38IP	suppressor of Ty 20	protein-coding	1.49292743562418	1.39779251325923	1.35789882251052	1.56884716437407	1.50448069175505	1.40669646819803	1.36675407942422	1.57660432485496	0.0369395282848799	0.973637963596899	0.998431161219273
Merged-chr2-27717422-2	chr2	27717322	27717522	+	627.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290482, intron 1 of 9)	intron (NM_001290482, intron 1 of 9)	6839.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41104618-4	chr19	41104504	41104704	+	932.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011904, intron 12 of 20)	B4|SINE|B4	-27491.0	NM_153520	226115.0	Mm.54119	NM_153520	ENSMUSG00000050121	Opalin	Tmem10|Tmp10	oligodendrocytic myelin paranodal and inner loop protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83360105-2	chr6	83360005	83360205	+	651.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Charlie12|DNA|hAT-Charlie	10621.0	NM_175277	78653.0	Mm.391470	NM_175277	ENSMUSG00000045160	Bola3	1810056O20Rik	bolA-like 3 (E. coli)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-124912128-4	chr8	124912016	124912216	+	897.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053207, intron 3 of 4)	intron (NM_053207, intron 3 of 4)	14230.0	NM_001111141	244666.0	Mm.482915	NM_001111141	ENSMUSG00000031986	Sprtn	Gm505	SprT-like N-terminal domain	protein-coding	1.63013745228497	3.85296966124294	2.65656892979357	3.22068607849224	3.01042320975468	2.89847385893364	2.22473127888125	2.31646852332639	-0.740629652024982	0.351949153872698	0.852350828361626
Merged-chr18-4312104-3	chr18	4311999	4312199	+	883.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40854.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-113312005-1	chr7	113311905	113312105	+	562.0	f0_balb.idr	intron (NM_001357070, intron 18 of 19)	intron (NM_001357070, intron 18 of 19)	57334.0	NM_133700	68815.0	Mm.238034	NM_133700	ENSMUSG00000038187	Btbd10	1110056N09Rik|Gmrp1	BTB (POZ) domain containing 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-113670638-3	chr5	113670455	113670655	+	815.43335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-20165.0	NM_008153	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-85557332-4	chr8	85557228	85557428	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2057.0	NM_019794	56445.0	Mm.475573	NM_019794	ENSMUSG00000031701	Dnaja2	1500017M13Rik|2010206B19Rik|DNAJ|DNJ3|Dnaj3|HIRIP4|PRO3015|mDj3	DnaJ heat shock protein family (Hsp40) member A2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-47945571-3	chr18	47945443	47945643	+	832.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045404, intron 2 of 3)	intron (NR_045404, intron 2 of 3)	22702.0	NR_045404	414127.0	Mm.450768	NR_045404		G630055G22Rik	-	RIKEN cDNA G630055G22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-77548735-2	chr10	77548635	77548835	+	549.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_008404, exon 6 of 16)	exon (NM_008404, exon 6 of 16)	18387.0	NM_008404	16414.0	Mm.1137	NM_008404	ENSMUSG00000000290	Itgb2	2E6|AI528527|Cd18|LAD|LCAMB|Lfa1|MF17	integrin beta 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-7755714-4	chr3	7755623	7755823	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16A|LTR|ERVL	-141963.0	NM_001313888	16196.0	Mm.3825	NM_008371	ENSMUSG00000040329	Il7	A630026I06Rik|Il-7|hlb368	interleukin 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-47726125-1	chr9	47726025	47726225	+	1000.0	f1_balb.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	92083.0	NR_046048	100038460.0	Mm.447649	NR_046048		Gm10677	-	predicted gene 10677	ncRNA	1.32294426971114	0.506224199635336	0.494284227431772	1.65780380005353	0.471428141873603	0.745365710639124	0.496936824811021	1.13116816046117	-1.57605752540248	0.356585988074284	0.85378439273359
Merged-chr11-102189175-2	chr11	102189075	102189275	+	781.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175935)	promoter-TSS (NM_175935)	-524.0	NM_175935	68401.0	Mm.22385	NM_175935	ENSMUSG00000034793	G6pc3	0710001K01Rik|AU019276|AU045429|AV128920|AW545836|UGRP	glucose 6 phosphatase, catalytic, 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139464569-2	chr5	139464469	139464669	+	855.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4035.0	NM_028469	73212.0	Mm.84294	NM_028469	ENSMUSG00000053553	3110082I17Rik	AW411904	RIKEN cDNA 3110082I17 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80095088-2	chr7	80094908	80095108	+	954.900024	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_173011, exon 11 of 11)	3' UTR (NM_173011, exon 11 of 11)	-19751.0	NR_045695	100859962.0	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-18342248-2	chr16	18342148	18342348	+	809.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359110, intron 1 of 9)	intron (NM_001359110, intron 1 of 9)	1662.0	NM_001359109	27883.0	Mm.265990	NM_138583	ENSMUSG00000013539	Tango2	D16H22S680E|T10	transport and golgi organization 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-146231736-3	chr5	146231643	146231843	+	949.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001359990, exon 1 of 13)	exon (NM_001359990, exon 1 of 13)	493.0	NM_153599	264064.0	Mm.260576	NM_153599	ENSMUSG00000029635	Cdk8	-	cyclin-dependent kinase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-38128690-4	chr3	38128605	38128805	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	79414.0	NR_040541	71342.0	Mm.410782	NR_040541	ENSMUSG00000106002	5430434I15Rik	-	RIKEN cDNA 5430434I15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120828466-3	chr8	120828365	120828565	+	809.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	89826.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88153480-2	chr3	88153380	88153580	+	619.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310593, intron 1 of 10)	intron (NM_001310593, intron 1 of 10)	11108.0	NM_133665	17261.0	Mm.28184	NM_133665	ENSMUSG00000001419	Mef2d	C80750	myocyte enhancer factor 2D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-85309788-1	chr1	85309688	85309888	+	577.5	f1_balb.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-39222.0	NM_001037909	620078.0	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik	RIKEN cDNA C130026I21 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80034200-4	chr10	80034074	80034274	+	958.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 1 of 4)	intron (NR_038088, intron 1 of 4)	5485.0	NM_025554	66420.0	Mm.18579	NM_025554	ENSMUSG00000004667	Polr2e	2410021N14Rik|25kDa|AW208866|RPB5|XAP4	polymerase (RNA) II (DNA directed) polypeptide E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-53980059-3	chr10	53979956	53980156	+	938.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008548, intron 5 of 12)	intron (NM_008548, intron 5 of 12)	95740.0	NM_008548	17155.0	Mm.117294	NM_008548	ENSMUSG00000003746	Man1a	Man1a1|PCR1	mannosidase 1, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-115650024-4	chr6	115649936	115650136	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029780, intron 1 of 16)	intron (NM_029780, intron 1 of 16)	25852.0	NM_001356334	110157.0	Mm.184163	NM_029780	ENSMUSG00000000441	Raf1	6430402F14Rik|AA990557|BB129353|Craf1|D830050J10Rik|Raf-1|c-Raf|cRaf|v-Raf	v-raf-leukemia viral oncogene 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65202631-1	chr9	65202531	65202731	+	556.0	f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-12059.0	NM_177460	214424.0	Mm.31129	NM_177460	ENSMUSG00000032392	Parp16	ARTD15|BC055447|C79952|PARP-16	poly (ADP-ribose) polymerase family, member 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-112956040-4	chr12	112955947	112956147	+	968.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13905.0	NM_001316724	66174.0	Mm.7070	NM_025399	ENSMUSG00000002804	Nudt14	1110030M18Rik|UGPPase	nudix (nucleoside diphosphate linked moiety X)-type motif 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-128245233-2	chr7	128245133	128245333	+	932.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_146205)	TTS (NM_146205)	-1579.0	NM_001289553	21804.0	Mm.3248	NM_009365	ENSMUSG00000030782	Tgfb1i1	ARA55|Hic5|TSC-5|hic-5	transforming growth factor beta 1 induced transcript 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-137536993-2	chr5	137536893	137537093	+	868.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3687.0	NM_010312	14693.0	Mm.30141	NM_010312	ENSMUSG00000029713	Gnb2	Gnb-2	guanine nucleotide binding protein (G protein), beta 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100345315-2	chr11	100345215	100345415	+	841.900024	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR17B_Mm|LTR|ERVK	10813.0	NM_001359052	15114.0	Mm.281700	NM_010404	ENSMUSG00000006930	Hap1	HAP-1	huntingtin-associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-122150673-7	chr2	122150593	122150793	+	826.68573	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009735, intron 1 of 3)	intron (NM_009735, intron 1 of 3)	3006.0	NM_009735	12010.0	Mm.163	NM_009735	ENSMUSG00000060802	B2m	Ly-m11|beta2-m|beta2m	beta-2 microglobulin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-23829195-4	chr17	23829092	23829292	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026305)	promoter-TSS (NM_026305)	-83.0	NM_026305	67673.0	Mm.153758	NM_026305	ENSMUSG00000055839	Elob	0610040H15Rik|Tceb2	elongin B	protein-coding	3.58343404345436	4.46827463022739	4.2743923374619	4.53649356326097	3.75105415966526	4.26406335856891	2.98686625528771	4.91081511157245	-0.130442746882687	0.797771402770825	0.998431161219273
Merged-chr7-100863475-4	chr7	100863365	100863565	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177073)	promoter-TSS (NM_177073)	-52.0	NM_177073	320100.0	Mm.40336	NM_177073	ENSMUSG00000008318	Relt	E430021K24Rik|Tnfrsf19l	RELT tumor necrosis factor receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-22266001-4	chr16	22265894	22266094	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009186)	promoter-TSS (NM_009186)	11.0	NM_001330554	20462.0	Mm.210352	NM_009186	ENSMUSG00000022858	Tra2b	5730405G21Rik|D16Ertd266e|SIG-41|Sfrs10|Silg41|TRA2beta	transformer 2 beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-118305018-3	chr7	118304902	118305102	+	704.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61095.0	NR_027879	67745.0	Mm.483404	NM_183267	ENSMUSG00000055159	4930583K01Rik	-	RIKEN cDNA 4930583K01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-58586154-4	chr4	58586053	58586253	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32662.0	NM_010336	14745.0	Mm.4772	NM_010336	ENSMUSG00000038668	Lpar1	AI326300|Edg2|Gpcr26|Kdt2|lpA1|vzg-1	lysophosphatidic acid receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-68905593-2	chr3	68905493	68905693	+	723.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_026641, intron 18 of 19)	intron (NM_026641, intron 18 of 19)	36007.0	NM_001167996	68725.0	Mm.45741	NM_001167996	ENSMUSG00000046999	1110032F04Rik	AI115547	RIKEN cDNA 1110032F04 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-112443356-4	chr13	112443251	112443451	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20719.0	NM_010560	16195.0	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99847519-2	chr15	99847419	99847619	+	611.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113545, intron 1 of 10)	intron (NM_001113545, intron 1 of 10)	-27370.0	NM_023063	65970.0	Mm.33207	NM_023063	ENSMUSG00000023022	Lima1	Eplin	LIM domain and actin binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-158123205-2	chr2	158123105	158123305	+	773.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009373, intron 10 of 12)	intron (NM_009373, intron 10 of 12)	23187.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-123837601-3	chr14	123837513	123837713	+	936.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145467, intron 3 of 10)	intron (NM_145467, intron 3 of 10)	-150022.0	NR_045479	69393.0	Mm.491348	NR_045479	ENSMUSG00000099994	1700024B18Rik	-	RIKEN cDNA 1700024B18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-118702414-2	chr2	118702314	118702514	+	623.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081971, exon 1 of 1)	exon (NM_001081971, exon 1 of 1)	1549.0	NM_001081971	383787.0	Mm.35758	NM_001081971	ENSMUSG00000078137	Ankrd63	Gm1337	ankyrin repeat domain 63	protein-coding	0.414144254748873	-0.19768351929596	-0.202166092573827	-0.205618735893959	0.346799928362446	-0.196671896860414	-0.0245926908546355	-0.205015926575408	0.108221428754899	0.964211394359368	1
Merged-chr8-11463882-4	chr8	11463809	11464009	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011227, intron 1 of 1)	intron (NM_011227, intron 1 of 1)	-14020.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118104185-4	chr11	118104101	118104301	+	977.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167746, intron 19 of 80)	MER74A|LTR|ERVL	25018.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-68623625-4	chr11	68623520	68623720	+	851.604126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36583.0	NM_177779	276920.0	Mm.123046	NM_177779	ENSMUSG00000045915	Ccdc42	A530001H01Rik	coiled-coil domain containing 42	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-32259267-4	chr19	32259164	32259364	+	910.9249880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 3 of 9)	intron (NM_144792, intron 3 of 9)	-48251.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-86652358-2	chr11	86652258	86652458	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356531, intron 5 of 11)	intron (NM_001356531, intron 5 of 11)	18917.0	NM_001356531	75909.0	Mm.390398	NM_029478	ENSMUSG00000018171	Vmp1	3110098I04Rik|4930579A11Rik|AI787464|Tango5|Tmem49|mir-21a|ni-2	vacuole membrane protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-99140671-2	chr3	99140571	99140771	+	548.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027462)	promoter-TSS (NM_027462)	-419.0	NM_027462	70560.0	Mm.316754	NM_027462	ENSMUSG00000004233	Wars2	5730427B17Rik|9430020O07Rik|AI413375|TrpRS	tryptophanyl tRNA synthetase 2 (mitochondrial)	protein-coding	0.656086040449433	1.57127437777647	0.687874136431921	1.55401492080482	0.659109734838323	1.58602879380081	0.691193808048877	1.56416680796211	0.0339300588441522	0.982929768233732	0.998431161219273
Merged-chr9-98955939-1	chr9	98955839	98956039	+	590.0	f0_balb.idr	promoter-TSS (NR_003248)	promoter-TSS (NR_003248)	332.0	NM_012020	26927.0	Mm.151239	NM_012020	ENSMUSG00000050397	Foxl2	AU045128|BPES|PINTO|Pfrk	forkhead box L2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-24898866-2	chr4	24898734	24898934	+	596.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_026742, intron 2 of 2)	intron (NM_026742, intron 2 of 2)	751.0	NM_026742	68493.0	Mm.204831	NM_026742	ENSMUSG00000028261	Ndufaf4	1110007M04Rik|3000003G13Rik|AW214064	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 4	protein-coding	1.65991897243326	1.98954355885959	1.5558141617774	0.983493769162233	1.56719846085168	2.00569626313224	1.56820257252095	0.986047019110404	-0.047015640299019	0.969245064683356	0.998431161219273
Merged-chr2-119290109-2	chr2	119289986	119290186	+	840.541626	f1_balb.idr|f1_c57bl6.idr	intron (NM_172269, intron 1 of 4)	intron (NM_172269, intron 1 of 4)	1344.0	NM_172269	228545.0	Mm.294761	NM_172269	ENSMUSG00000034216	Vps18	9930024E13Rik	VPS18 CORVET/HOPS core subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-142443673-4	chr5	142443555	142443755	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199068, intron 2 of 8)	intron (NM_199068, intron 2 of 8)	-20276.0	NM_172725	231855.0	Mm.78250	NM_172725	ENSMUSG00000039623	Ap5z1	C330006K01Rik	adaptor-related protein complex 5, zeta 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-50540360-3	chr9	50540246	50540446	+	900.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359610, intron 6 of 10)	intron (NM_001359610, intron 6 of 10)	-11705.0	NM_011220	19286.0	Mm.35856	NM_011220	ENSMUSG00000032067	Pts	PTPS	6-pyruvoyl-tetrahydropterin synthase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76207542-2	chr15	76207442	76207642	+	736.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163542, intron 1 of 33)	intron (NM_001163542, intron 1 of 33)	711.0	NM_201388	18810.0	Mm.234912	NM_011117	ENSMUSG00000022565	Plec	AA591047|AU042537|EBS1|PCN|PLTN|Plec1	plectin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-119807068-2	chr8	119806968	119807168	+	668.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28652.0	NM_028883	74347.0	Mm.358759	NM_028883	ENSMUSG00000034105	Tldc1	4632415K11Rik|Kiaa1609	TBC/LysM associated domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-3382483-3	chr5	3382363	3382563	+	866.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 2 of 7)	intron (NM_009873, intron 2 of 7)	38570.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-28659367-3	chr19	28659286	28659486	+	880.455566	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175459, intron 2 of 10)	intron (NM_175459, intron 2 of 10)	-18838.0	NR_045330	320176.0	Mm.406716	NR_045330	ENSMUSG00000097735	D930032P07Rik	-	RIKEN cDNA D930032P07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30917416-4	chr7	30917314	30917514	+	954.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-2492.0	NM_010758	17136.0	Mm.241355	NM_010758	ENSMUSG00000036634	Mag	Gma|siglec-4a	myelin-associated glycoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-63168281-2	chr17	63168181	63168381	+	836.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_015794, intron 7 of 8)	intron (NM_015794, intron 7 of 8)	144692.0	NR_130176	414079.0	Mm.444282	NR_130176	ENSMUSG00000090565	4930405O22Rik	-	RIKEN cDNA 4930405O22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-38183158-4	chr7	38183064	38183264	+	963.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028166)	promoter-TSS (NM_028166)	-53.0	NM_001085385	72244.0	Mm.187554	NM_028166		1600014C10Rik	AI428873	RIKEN cDNA 1600014C10 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-102411923-4	chr11	102411842	102412042	+	991.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER20B|DNA|hAT-Charlie	-4425.0	NM_026542	68066.0	Mm.44226	NM_026542	ENSMUSG00000018677	Slc25a39	3010027G13Rik|D11Ertd333e	solute carrier family 25, member 39	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-22750348-2	chr2	22750248	22750448	+	825.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23979.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-43985053-1	chr7	43984953	43985153	+	541.0	f1_balb.idr	Intergenic	Intergenic	8992.0	NM_010116	13648.0	Mm.440884	NM_010116	ENSMUSG00000059042	Klk1b9	EGF-BP C|Egfbp-3|Egfbp3|KAL|Klk9|kallikrein|mGk-9	kallikrein 1-related peptidase b9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-75681514-2	chr2	75681414	75681614	+	608.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010902, intron 1 of 4)	intron (NM_010902, intron 1 of 4)	22224.0	NR_033513	627828.0	Mm.459502	NR_033513	ENSMUSG00000092086	Gm6793	EG627828	heterogeneous nuclear ribonucleoprotein A3 pseudogene	pseudo	-0.0261477598440248	-0.491888976429569	0.181540863488489	-0.498925213271347	-0.503254764458619	-0.490993542623403	-0.494985014372717	-0.498389931825653	-3.50419032496275	0.194426912682844	1
Merged-chr17-79031767-1	chr17	79031667	79031867	+	742.0	f1_c57bl6.idr	Intergenic	Intergenic	-10951.0	NM_029239	75292.0	Mm.252776	NM_029239	ENSMUSG00000024070	Prkd3	4930557O20Rik|5730497N19Rik|PKD3|Pkcnu|Prkcn	protein kinase D3	protein-coding	0.873622043656316	0.339387199283477	0.894094181611662	0.748171645472858	0.79696510842707	0.340889806246935	0.334191607852244	0.328476924752124	-1.6822613138982	0.374692462523696	1
Merged-chr13-110383347-2	chr13	110383247	110383447	+	665.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-11697.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-10344881-4	chr17	10344883	10345083	+	976.5277710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20381.0	NR_045461	76634.0	Mm.491052	NR_045461	ENSMUSG00000099384	1700110C19Rik	-	RIKEN cDNA 1700110C19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-109750401-2	chr8	109750301	109750501	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12662.0	NM_001080930	52335.0	Mm.276770	NM_001080930	ENSMUSG00000069895	Atxn1l	AW558552|Boat|C330011L24Rik|D6Mgi37|D8Ertd587e	ataxin 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-18759955-5	chr8	18759828	18760028	+	736.766663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173189, intron 12 of 13)	MER126|DNA|DNA	-18366.0	NM_007426	11601.0	Mm.439874	NM_007426	ENSMUSG00000031465	Angpt2	Agpt2|Ang-2|Ang2	angiopoietin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91907178-2	chr2	91907078	91907278	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080754, intron 16 of 18)	MLT1A|LTR|ERVL-MaLR	-15011.0	NM_007699	12672.0	Mm.330405	NM_007699	ENSMUSG00000040495	Chrm4	Chrm-4|M4	cholinergic receptor, muscarinic 4	protein-coding	-0.0741482307063471	0.101956910328765	0.21302996623748	0.295064280943427	-0.0734858772472228	-0.0625339416685293	-0.0661440339785022	0.391156192030298	-0.645752369368027	0.770477246071902	1
Merged-chr2-11739755-4	chr2	11739644	11739844	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34032.0	NM_001271500	16169.0	Mm.200196	NM_008358	ENSMUSG00000023206	Il15ra	AA690181|IL-15RA	interleukin 15 receptor, alpha chain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85608274-4	chr12	85608202	85608402	+	757.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_030887, exon 2 of 4)	exon (NM_030887, exon 2 of 4)	8284.0	NM_001205053	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-20831070-6	chr11	20830955	20831155	+	994.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173752)	promoter-TSS (NM_173752)	53.0	NM_173752	216551.0	Mm.76694	NM_173752	ENSMUSG00000042363	Lgalsl	1110067D22Rik|A530071M23|Grpa|Hspc159|Lgalsla	lectin, galactoside binding-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-45090783-2	chr2	45090683	45090883	+	810.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355291, intron 2 of 9)	ID_B1|SINE|B4	19494.0	NM_001289521	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91847709-4	chr16	91847610	91847810	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110275, intron 19 of 28)	intron (NM_001110275, intron 19 of 28)	83920.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-12047250-4	chr13	12047132	12047332	+	861.1749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023868, intron 1 of 104)	intron (NM_023868, intron 1 of 104)	59713.0	NM_023868	20191.0	Mm.239871	NM_023868	ENSMUSG00000021313	Ryr2	9330127I20Rik|RYR-2	ryanodine receptor 2, cardiac	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-40815361-4	chr4	40815279	40815479	+	896.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022305, intron 2 of 5)	intron (NM_022305, intron 2 of 5)	34759.0	NR_039584	100628614.0		NR_039584	ENSMUSG00000096377	Mir5123	mmu-mir-5123|mu-mir-5123	microRNA 5123	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-82914287-3	chr10	82914185	82914385	+	742.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47659.0	NM_025499	66341.0	Mm.443284	NM_025499	ENSMUSG00000109864	Eid3	1700027M21Rik|NS4EB	EP300 interacting inhibitor of differentiation 3	protein-coding	0.934863100028762	1.76057247083375	2.02797553211096	0.961959378218841	1.13713169246446	1.90451078522292	1.94540451171636	1.6538691598519	0.530246183587276	0.670844756942484	0.99359666617512
Merged-chr5-142453954-2	chr5	142453854	142454054	+	836.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_199068, exon 7 of 9)	exon (NM_199068, exon 7 of 9)	-9977.0	NM_172725	231855.0	Mm.78250	NM_172725	ENSMUSG00000039623	Ap5z1	C330006K01Rik	adaptor-related protein complex 5, zeta 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-10944856-1	chr4	10944756	10944956	+	563.0	f1_balb.idr	Intergenic	Lx6|LINE|L1	62763.0	NM_175175	71801.0	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150011930-4	chr4	150011825	150012025	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2902.0	NM_173371	100198.0	Mm.22183	NM_173371	ENSMUSG00000028980	H6pd	AI785303|G6pd1|Gpd-1|Gpd1	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-145090249-4	chr7	145090152	145090352	+	820.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	117867.0	NR_033626	100040049.0	Mm.102235	NR_033626	ENSMUSG00000109305	1810010D01Rik	Gm2572	RIKEN cDNA 1810010D01 gene	ncRNA	0.586297976643805	0.457506197508508	0.934671963946539	0.441896243609391	0.432175449355684	0.843648439478455	1.27117024381974	1.0193580168498	1.69429787523229	0.317633840303361	1
Merged-chr6-148577866-4	chr6	148577767	148577967	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	36442.0	NR_045867	622319.0	Mm.491049	NM_001037912	ENSMUSG00000070995	Gm6313	EG622319	predicted gene 6313	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-72197234-3	chr2	72197133	72197333	+	804.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355478, intron 8 of 26)	intron (NM_001355478, intron 8 of 26)	-88404.0	NM_023057	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	0.387774033168824	0.0265967765939852	0.0209733690250356	0.649924056673387	0.0104866398520587	0.0278636103819963	0.0222141513739945	0.657776009063745	-0.559702672758948	0.801983482678245	1
Merged-chr2-69098996-2	chr2	69098896	69099096	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347161, intron 8 of 10)	intron (NM_001347161, intron 8 of 10)	-36804.0	NM_181547	329416.0	Mm.90047	NM_181547	ENSMUSG00000034738	Nostrin	Daip2|mDaIP2	nitric oxide synthase trafficker	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-97548729-4	chr13	97548649	97548849	+	978.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11251.0	NR_046157	328314.0	Mm.138047	NR_046157	ENSMUSG00000110235	Gm5086	B230311A21|EG328314	predicted gene 5086	ncRNA	3.00415613883613	1.39268623207973	3.13166804408742	2.67467297895029	2.37248167129413	1.91739694836729	1.63265038738317	2.38768969392829	-1.24249702619592	0.171555507348732	0.639098419738178
Merged-chr11-77468692-2	chr11	77468592	77468792	+	750.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_139129, intron 6 of 8)	intron (NM_139129, intron 6 of 8)	4779.0	NM_139130	216961.0	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124542613-4	chr6	124542501	124542701	+	979.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001097617)	promoter-TSS (NM_001097617)	-242.0	NM_001097617	50908.0	Mm.219527	NM_144938	ENSMUSG00000038521	C1s1	AA959438|AI255193|AI327365|C1s|C1sa	complement component 1, s subcomponent 1	protein-coding	1.83890670348969	0.760796959586103	0.747072132204804	0.73630126383428	1.18061993932918	1.18434848095912	1.42380280806302	1.48294876682223	0.638786555507615	0.662512158578526	0.991056031673253
Merged-chr5-113797003-2	chr5	113796903	113797103	+	559.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146162, intron 1 of 1)	intron (NM_146162, intron 1 of 1)	3349.0	NM_146162	231633.0	Mm.41681	NM_146162	ENSMUSG00000054675	Tmem119	AW208946|BC025600|obif	transmembrane protein 119	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-20520963-1	chr3	20520863	20521063	+	578.666687	f0_balb.idr	Intergenic	Intergenic	-153786.0	NM_175086	11608.0	Mm.134863	NM_175086	ENSMUSG00000054988	Agtr1b	AT1B|AT2R1B|Agtr-1b|Angtr-1b	angiotensin II receptor, type 1b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-53107741-4	chr15	53107656	53107856	+	883.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	238427.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120315353-2	chr11	120315253	120315453	+	738.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32060.0	NR_105900	102465564.0		NR_105900	ENSMUSG00000098955	Mir6935	Gm27344|mmu-mir-6935	microRNA 6935	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-164822941-4	chr2	164822838	164823038	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_178375)	TTS (NM_178375)	252.0	NM_028028	71971.0	Mm.161149	NM_028028	ENSMUSG00000017764	Zswim1	2410003H12Rik|AI850991|BB046916	zinc finger SWIM-type containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-109419189-4	chr4	109419085	109419285	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145948, intron 2 of 17)	intron (NM_001145948, intron 2 of 17)	3538.0	NM_001145948	230603.0	Mm.33091	NM_153392	ENSMUSG00000028555	Ttc39a	4922503N01Rik	tetratricopeptide repeat domain 39A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-146844535-3	chr5	146844443	146844643	+	761.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026864)	promoter-TSS (NM_026864)	-528.0	NM_026864	68895.0	Mm.266978	NM_026864	ENSMUSG00000029641	Rasl11a	1110065D03Rik|AI852031	RAS-like, family 11, member A	protein-coding	2.3039594559711	1.7798440481843	2.5953418177569	1.67530382218817	2.40752475979375	1.29880099606431	2.84972189650008	1.68356449729412	0.152750178256501	0.877730442163417	0.998431161219273
Merged-chr14-120157607-3	chr14	120157491	120157691	+	907.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-115156.0	NM_001001490	239283.0	Mm.138520	NM_001001490	ENSMUSG00000044819	Oxgr1	Cysltr3|Gm299|Gpr80|Gpr99|P2Y15	oxoglutarate (alpha-ketoglutarate) receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-80294088-4	chr18	80293959	80294159	+	762.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001190373)	TTS (NM_001190373)	37753.0	NM_025861	66943.0	Mm.29247	NM_025861	ENSMUSG00000034006	Pqlc1	2310009N05Rik|4933425L21Rik|5730564E11Rik|C78974	PQ loop repeat containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-54528254-2	chr11	54528154	54528354	+	717.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252494, intron 1 of 28)	intron (NM_001252494, intron 1 of 28)	5409.0	NM_001252496	192786.0	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-82259331-2	chr12	82259231	82259431	+	860.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001167983, intron 2 of 23)	RSINE1|SINE|B4	-52018.0	NM_172579	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-22027391-4	chr16	22027303	22027503	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027488, intron 7 of 16)	intron (NR_027488, intron 7 of 16)	17919.0	NM_001357424	75826.0	Mm.297431	NM_029457	ENSMUSG00000022855	Senp2	2310007L05Rik|4930538C18Rik|AI646780|AW554757|Smt3ip2|SuPr-1|mKIAA1331	SUMO/sentrin specific peptidase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-79499965-3	chr7	79499822	79500022	+	803.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040311)	promoter-TSS (NR_040311)	-104.0	NR_040311	101694.0	Mm.41661	NR_040311	ENSMUSG00000097023	Mir9-3hg	AI854517	Mir9-3 host gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-49601346-1	chr7	49601246	49601446	+	863.5	f0_balb.idr	intron (NM_175272, intron 36 of 37)	intron (NM_175272, intron 36 of 37)	35489.0	NM_001005232	13172.0	Mm.307176	NM_001005232	ENSMUSG00000030507	Dbx1	AI426026|Dbx	developing brain homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-24684825-5	chr5	24684725	24684925	+	937.033325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016736)	promoter-TSS (NM_016736)	-990.0	NM_016736	53312.0	Mm.5856	NM_016736	ENSMUSG00000028954	Nub1	4931404D21Rik|6330412F12Rik|BS4|NY-REN-18	negative regulator of ubiquitin-like proteins 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-43209732-4	chr16	43209625	43209825	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285805, intron 2 of 10)	L1MD2|LINE|L1	-37559.0	NM_181058	56490.0	Mm.136238	NM_019778	ENSMUSG00000022708	Zbtb20	1300017A20Rik|7330412A13Rik|A930017C21Rik|D16Wsu73e|DPZF|HOF|J20|ODA-8S|Oda8|Tg(PDGFB-APPSwInd)20Lms|Zfp288	zinc finger and BTB domain containing 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71371679-4	chr8	71371582	71371782	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029865, exon 1 of 4)	exon (NM_029865, exon 1 of 4)	384.0	NM_001293800	77090.0	Mm.440170	NM_029865	ENSMUSG00000002396	Ocel1	9430098E02Rik|AI326022|AI593544	occludin/ELL domain containing 1	protein-coding	6.19010808174005	6.66506408096782	5.44939194070294	5.86954050296307	6.49140630753348	6.40738142875976	6.34532444853521	6.4388896234579	0.339695225262941	0.173995347816288	0.641919003929331
Merged-chr12-98246998-2	chr12	98246898	98247098	+	581.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008079, intron 5 of 16)	intron (NM_008079, intron 5 of 16)	12461.0	NM_008079	14420.0	Mm.5120	NM_008079	ENSMUSG00000021003	Galc	2310068B06Rik|A930008M05Rik|AW212969|AW413532|Gacy|twi|twitcher	galactosylceramidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-26318927-2	chr10	26318827	26319027	+	704.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359255, intron 12 of 21)	intron (NM_001359255, intron 12 of 21)	55145.0	NM_001359255	237339.0	Mm.338439	NM_172787	ENSMUSG00000039089	L3mbtl3	AI481284|MBT-1	L3MBTL3 histone methyl-lysine binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116784405-4	chr11	116784297	116784497	+	990.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8890.0	NM_011371	20445.0	Mm.436887	NM_011371	ENSMUSG00000009588	St6galnac1	Siat7a	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 1	protein-coding	3.31976654712368	2.21496590813683	4.35284357202604	2.46735905436464	5.08504570437812	5.0382986702919	5.43931313268324	5.34917690251226	2.39866655393822	1.13502696592259e-06	7.09273621726e-05
Merged-chr5-34528869-2	chr5	34528769	34528969	+	913.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011893, intron 1 of 12)	intron (NM_011893, intron 1 of 12)	3085.0	NM_011893	24055.0	Mm.5012	NM_011893	ENSMUSG00000054520	Sh3bp2	3BP2	SH3-domain binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-74387775-2	chr1	74387675	74387875	+	804.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-3834.0	NM_153088	227292.0	Mm.165042	NM_153088	ENSMUSG00000026176	Ctdsp1	GIP|NLIIF|Nif3|SCP1	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-86904258-3	chr4	86904188	86904388	+	747.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290543, intron 4 of 5)	intron (NM_001290543, intron 4 of 5)	29874.0	NM_139306	230379.0	Mm.45019	NM_139306	ENSMUSG00000038007	Acer2	2410116I05Rik|Asah3l|CRG-L1|maCER2	alkaline ceramidase 2	protein-coding	2.53381216606149	1.26557215995695	1.88374015467981	1.82925705034524	2.48222368981123	2.27115880852842	1.24031218790281	2.9514935545122	0.939134218995758	0.364326505705888	0.8601283637491
Merged-chr6-65510495-4	chr6	65510361	65510561	+	914.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-79937.0	NM_001001495	414084.0	Mm.117558	NM_001001495	ENSMUSG00000044162	Tnip3	9030611K07Rik|ABIN-3|LIND	TNFAIP3 interacting protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41349138-2	chr19	41349049	41349249	+	795.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 2 of 16)	intron (NM_031376, intron 2 of 16)	35921.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-43778323-4	chr13	43778240	43778440	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6772.0	NM_009856	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-53399827-4	chr15	53399739	53399939	+	977.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-53656.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-151930670-2	chr2	151930570	151930770	+	994.599976	f1_balb.idr|f1_c57bl6.idr	intron (NM_009641, intron 4 of 8)	intron (NM_009641, intron 4 of 8)	19463.0	NM_009641	11602.0	Mm.189536	NM_009641	ENSMUSG00000027460	Angpt4	ANG-3|ANG-4|Agpt4|Ang3	angiopoietin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-57539402-2	chr12	57539302	57539502	+	715.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6709.0	NM_008259	15375.0	Mm.4578	NM_008259	ENSMUSG00000035451	Foxa1	Hnf-3a|Hnf3a|Tcf-3a|Tcf3a	forkhead box A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-185294400-1	chr1	185294300	185294500	+	632.0	f0_balb.idr	intron (NM_198653, intron 18 of 22)	RSINE1|SINE|B4	-18919.0	NR_029580	387189.0		NR_029580	ENSMUSG00000065581	Mir194-1	Mirn194|Mirn194-1|miR-194|mir-194-1	microRNA 194-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91457557-2	chr16	91457457	91457657	+	714.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-7547.0	NR_077219	100503120.0	Mm.387130	NR_077219	ENSMUSG00000084866	A930006K02Rik	-	RIKEN cDNA A930006K02 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-56592108-3	chr13	56592013	56592213	+	690.133301	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-17473.0	NM_009369	21810.0	Mm.14455	NM_009369	ENSMUSG00000035493	Tgfbi	68kDa|AI181842|AI747162|Beta-ig|big-h3	transforming growth factor, beta induced	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-62550758-2	chr10	62550658	62550858	+	564.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-23313.0	NM_001358965	19073.0	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133239088-1	chr4	133238988	133239188	+	573.0	f1_c57bl6.idr	Intergenic	Intergenic	-1730.0	NM_016693	53608.0	Mm.36640	NM_016693	ENSMUSG00000028862	Map3k6	Ask2|MAPKKK6|MEKK6	mitogen-activated protein kinase kinase kinase 6	protein-coding	1.96609564820022	1.21075828452056	2.14784406088845	3.27947046536309	1.85592908355427	1.21823204268678	2.29104995510114	2.09376350878427	-1.04181220646273	0.319615014900568	0.821951596143819
Merged-chr3-41366991-1	chr3	41366891	41367091	+	993.1666869999999	f0_balb.idr	Intergenic	Intergenic	126208.0	NR_040385	78706.0	Mm.366094	NR_040385	ENSMUSG00000097639	Platr4	C430002E04Rik	pluripotency associated transcript 4	ncRNA	0.145863679938972	-0.107453055879207	-0.112577287320425	-0.116532972631344	0.678507312642357	-0.106298375204835	-0.111446839965256	0.317951411979364	2.37924039347616	0.309759298999005	1
Merged-chr10-43173364-3	chr10	43173306	43173506	+	737.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175407, intron 1 of 6)	CpG	1124.0	NM_175407	109205.0	Mm.153750	NM_175407	ENSMUSG00000038248	Sobp	2900009C16Rik|5330439J01Rik|JXC1|jc	sine oculis binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-170175744-2	chr1	170175644	170175844	+	729.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001305045)	promoter-TSS (NM_001305045)	-780.0	NM_001305045	107652.0	Mm.27969	NM_133806	ENSMUSG00000026670	Uap1	AA420407|AA437972|AGX-1|AGX-2|AGX1|AgX|ESTM38|SPAG2	UDP-N-acetylglucosamine pyrophosphorylase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-53390836-3	chr9	53390801	53391001	+	854.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_212445, intron 3 of 7)	intron (NM_212445, intron 3 of 7)	6878.0	NM_212445	68304.0	Mm.427519	NM_212445	ENSMUSG00000034487	Kdelc2	2010004J24Rik|4833410J10Rik|AW549401	KDEL (Lys-Asp-Glu-Leu) containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-67250038-4	chr18	67249939	67250139	+	840.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-4209.0	NM_001357518	225651.0	Mm.235792	NM_172630	ENSMUSG00000062526	Mppe1	Pgap5	metallophosphoesterase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-33900219-4	chr7	33900116	33900316	+	904.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44769.0	NM_178308	110187.0	Mm.155750	NM_178308	ENSMUSG00000066586	Scgb2b26	Abpbg26|Abpbg4|Abpg|C2d|Scgb2b4	secretoglobin, family 2B, member 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-36863046-4	chr3	36862921	36863121	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172679)	promoter-TSS (NM_172679)	-85.0	NM_172679	229227.0	Mm.207907	NM_172679	ENSMUSG00000037270	4932438A13Rik	4732443H21|B830039D19Rik|D630029K19Rik|FSA|Kiaa1109|Tweek	RIKEN cDNA 4932438A13 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-27526259-2	chr7	27526159	27526359	+	790.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033315, intron 1 of 3)	intron (NM_001033315, intron 1 of 3)	2998.0	NM_001033315	233020.0	Mm.429716	NM_001033315	ENSMUSG00000040424	Hipk4	Gm162	homeodomain interacting protein kinase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-49019080-6	chr17	49018980	49019180	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027452, intron 1 of 2)	intron (NM_027452, intron 1 of 2)	86498.0	NM_027452	70530.0	Mm.133607	NM_027452	ENSMUSG00000040490	Lrfn2	5730420O05Rik|SALM1|mKIAA1246	leucine rich repeat and fibronectin type III domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-30507334-2	chr3	30507234	30507434	+	880.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361034, intron 1 of 16)	intron (NM_001361034, intron 1 of 16)	2341.0	NM_001361034	14013.0	Mm.56965	NM_007963	ENSMUSG00000027684	Mecom	D630039M04Rik|Evi-1|Evi1|Jbo|Mds|Mds1|Mds1-Evi1|Prdm3|Znfpr1b1	MDS1 and EVI1 complex locus	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-86527403-4	chr1	86527292	86527492	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008972, intron 1 of 4)	CpG-365	835.0	NM_001360830	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-99365375-4	chr5	99365219	99365419	+	941.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-112392.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-27486923-4	chr7	27486828	27487028	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018820)	promoter-TSS (NM_018820)	-25.0	NM_018820	55942.0	Mm.153684	NM_018820	ENSMUSG00000008384	Sertad1	1110032C13Rik|AV000455|AW456625|Sei-1|Sei1|TRIP-Br1	SERTA domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122273337-3	chr8	122273219	122273419	+	900.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8822.0	NM_009569	22761.0	Mm.3105	NM_009569	ENSMUSG00000049577	Zfpm1	FOG|Fog1	zinc finger protein, multitype 1	protein-coding	2.18187297720784	2.19092047568119	1.96791647835739	2.49723746989311	2.81119356812435	1.38035624669053	1.80798942115579	2.67790186566689	0.226011985022715	0.808858663924857	0.998431161219273
Merged-chr6-141070058-4	chr6	141069938	141070138	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-179231.0	NM_018779	54611.0	Mm.103728	NM_018779	ENSMUSG00000041741	Pde3a	A930022O17Rik|C87899	phosphodiesterase 3A, cGMP inhibited	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-80260560-4	chr18	80260482	80260682	+	863.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025861, intron 2 of 5)	intron (NM_025861, intron 2 of 5)	4276.0	NM_025861	66943.0	Mm.29247	NM_025861	ENSMUSG00000034006	Pqlc1	2310009N05Rik|4933425L21Rik|5730564E11Rik|C78974	PQ loop repeat containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-119533532-2	chr1	119533432	119533632	+	592.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_126486, intron 3 of 3)	ID_B1|SINE|B4	2633.0	NR_126486	320069.0	Mm.406320	NR_126486	ENSMUSG00000101731	3830432H09Rik	-	RIKEN cDNA 3830432H09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36720811-2	chr18	36720667	36720867	+	776.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CAAAAA)n|Simple_repeat|Simple_repeat	6048.0	NM_009841	12475.0	Mm.3460	NM_009841	ENSMUSG00000051439	Cd14	-	CD14 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102366712-2	chr12	102366612	102366812	+	999.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_177620, intron 5 of 9)	intron (NM_177620, intron 5 of 9)	73101.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-13752711-2	chr9	13752611	13752811	+	575.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_024025, intron 1 of 15)	intron (NR_024025, intron 1 of 15)	3530.0	NM_023858	77116.0	Mm.210405	NM_023858	ENSMUSG00000031918	Mtmr2	6030445P13Rik	myotubularin related protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-67279240-2	chr18	67279140	67279340	+	668.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9983.0	NM_053261	114663.0	Mm.34079	NM_053261	ENSMUSG00000024525	Impa2	2210415D20Rik|AI326924|AW259601	inositol (myo)-1(or 4)-monophosphatase 2	protein-coding	-0.234210043375341	-0.566364861528237	-0.569347025131411	-0.571632903884352	-0.226472047405212	-0.565689633123148	-0.568691162538135	-0.290265002475227	0.848768965298398	0.753628713698699	1
Merged-chr1-181273051-2	chr1	181272951	181273151	+	686.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61073.0	NM_145514	226757.0	Mm.289082	NM_145514	ENSMUSG00000038733	Wdr26	1600024A01Rik|AA693241|AI447817|AU044014|C77982|Gid7	WD repeat domain 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65391483-2	chr9	65391383	65391583	+	601.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_028974, exon 1 of 1)	exon (NM_028974, exon 1 of 1)	169.0	NM_028974	74492.0	Mm.159223	NM_028974	ENSMUSG00000054978	Kbtbd13	5430433E21Rik	kelch repeat and BTB (POZ) domain containing 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-33781293-4	chr17	33781199	33781399	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_020581, exon 1 of 7)	exon (NM_020581, exon 1 of 7)	276.0	NM_020581	57875.0	Mm.196189	NM_020581	ENSMUSG00000002289	Angptl4	Arp4|Bk89|Fiaf|Hfarp|Ng27|Pgar|Pgarg|Pp1158	angiopoietin-like 4	protein-coding	2.43809751746809	2.59250524202557	3.55411219338214	2.91554161598149	2.68905702113061	3.01624607383121	3.2109484847903	3.47665939039408	0.308704758639089	0.642980835291557	0.982823301118608
Merged-chr15-7129972-3	chr15	7129888	7130088	+	888.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358593, intron 1 of 19)	CpG	416.0	NM_001358593	16880.0	Mm.149720	NM_013584	ENSMUSG00000054263	Lifr	A230075M04Rik|AW061234|LIF	leukemia inhibitory factor receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78428721-2	chr15	78428621	78428821	+	807.6999509999999	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_110357, exon 1 of 7)	non-coding (NR_110357, exon 1 of 7)	157.0	NR_110357	72844.0	Mm.390816	NM_001081367	ENSMUSG00000033287	Kctd17	2900008M13Rik|AA414907|AW742389|N28155	potassium channel tetramerisation domain containing 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131379186-4	chr1	131379114	131379314	+	921.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081011, intron 4 of 22)	(A)n|Simple_repeat|Simple_repeat	-99651.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-32161816-2	chr16	32161716	32161916	+	651.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347181, intron 1 of 2)	B1_Mus2|SINE|Alu	3778.0	NM_146069	224109.0	Mm.33498	NM_146069	ENSMUSG00000052384	Nrros	E430025L02Rik|Lrcc33|Lrrc33	negative regulator of reactive oxygen species	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-121500362-3	chr3	121500270	121500470	+	944.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145394, intron 9 of 14)	intron (NM_145394, intron 9 of 14)	31974.0	NM_145394	213603.0	Mm.33062	NM_145394	ENSMUSG00000039865	Slc44a3	BC010552	solute carrier family 44, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-46530673-2	chr18	46530573	46530773	+	607.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4702.0	NM_173423	240263.0	Mm.38249	NM_173423	ENSMUSG00000033319	Fem1c	2610312A07Rik|3632443A22Rik|AI646567	fem-1 homolog c (C.elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90501867-3	chr2	90501768	90501968	+	858.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	-22694.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-43921930-4	chr14	43921823	43922023	+	991.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_053112)	TTS (NM_053112)	1445.0	NM_053112	93725.0	Mm.429087	NM_053112	ENSMUSG00000090166	Ear10	Raf2	eosinophil-associated, ribonuclease A family, member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-34301506-2	chr11	34301406	34301606	+	716.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_033374, intron 29 of 51)	intron (NM_033374, intron 29 of 51)	-13316.0	NM_001025382	574403.0	Mm.444796	NM_001025382	ENSMUSG00000069911	Fam196b	EG574403|Gm6041	family with sequence similarity 196, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-57330946-4	chr2	57330853	57331053	+	940.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010274, intron 6 of 16)	intron (NM_010274, intron 6 of 16)	92571.0	NM_010274	14571.0	Mm.3711	NM_010274	ENSMUSG00000026827	Gpd2	AA408484|AI448216|AU021455|AW494132|GPDH|Gdm1|Gpd-m|Gpdh-m|TISP38	glycerol phosphate dehydrogenase 2, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-126677604-4	chr4	126677516	126677716	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011970)	promoter-TSS (NM_011970)	-27.0	NM_011970	26445.0	Mm.22233	NM_011970	ENSMUSG00000028837	Psmb2	AU045357|AW108089|C7-I|D4Wsu33e|HC7-I	proteasome (prosome, macropain) subunit, beta type 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-136519087-4	chr6	136518962	136519162	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019426, intron 1 of 14)	CpG	211.0	NM_019426	54343.0	Mm.173271	NM_019426	ENSMUSG00000030213	Atf7ip	2610204M12Rik|AM|Mcaf1	activating transcription factor 7 interacting protein	protein-coding	6.0458299675792	4.59507891607707	5.4885164129497	5.11191454672376	5.36207931410944	5.33062825197454	5.24448660791797	5.99879895494633	0.110899686916677	0.745048475171973	0.998431161219273
Merged-chr14-76279245-4	chr14	76279144	76279344	+	922.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27782.0	NR_152108	72893.0	Mm.233565	NR_152108		2900040C04Rik	-	RIKEN cDNA 2900040C04 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-45109155-4	chr13	45109052	45109252	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-107056.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	3.92996915328661	4.33659173887072	4.58153623875436	5.22846821430493	4.87253914162938	4.15611019279634	4.56566291955926	4.57520232793	-0.0398847704331558	0.922643589797619	0.998431161219273
Merged-chr4-12499128-2	chr4	12499028	12499228	+	807.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-327113.0	NM_026558	68099.0	Mm.25340	NM_026558	ENSMUSG00000028218	Fam92a	6720467C03Rik|Fam92a1	family with sequence similarity 92, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-124929060-2	chr2	124928960	124929160	+	558.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-139067.0	NM_175034	317750.0	Mm.330538	NM_175034	ENSMUSG00000035183	Slc24a5	F630045L20Rik|JSX|NCKX5|NCX5|Oca6	solute carrier family 24, member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-96530035-2	chr9	96529935	96530135	+	637.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51360.0	NM_001311135	19823.0	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-56547610-1	chr19	56547510	56547710	+	742.0	f0_balb.idr	promoter-TSS (NM_025811)	promoter-TSS (NM_025811)	512.0	NM_001360437	55947.0	Mm.2805	NM_018831	ENSMUSG00000025077	Dclre1a	2810043H12Rik|AU022226|Pso2|Smn1a|Snm1|mKIAA0086	DNA cross-link repair 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-143838837-1	chr2	143838737	143838937	+	668.0	f0_balb.idr	intron (NM_001291061, intron 5 of 7)	intron (NM_001291061, intron 5 of 7)	24336.0	NM_009751	12075.0	Mm.275937	NM_009751	ENSMUSG00000027420	Bfsp1	CP95	beaded filament structural protein 1, in lens-CP94	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-88494858-2	chr10	88494758	88494958	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144807, intron 1 of 7)	intron (NM_144807, intron 1 of 7)	9112.0	NR_027477	212862.0	Mm.288897	NM_144807	ENSMUSG00000060002	Chpt1	-	choline phosphotransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-105122043-1	chr9	105121943	105122143	+	777.75	f0_balb.idr	Intergenic	Intergenic	9762.0	NM_029385	75686.0	Mm.305810	NM_029385	ENSMUSG00000032565	Nudt16	2310041H06Rik|2810047L04Rik|2900006H04Rik|AI851783	nudix (nucleoside diphosphate linked moiety X)-type motif 16	protein-coding	1.24957440365956	1.89601807189006	2.4209238994349	2.00382164035605	1.8110070488477	1.12750663882013	1.34238522533914	2.01474705901752	-0.942383551262045	0.395199646793557	0.882909751294042
Merged-chr17-25136474-3	chr17	25136320	25136520	+	891.7666630000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001317404)	promoter-TSS (NM_001317404)	-211.0	NM_001317404	26373.0	Mm.270587	NM_011930	ENSMUSG00000036636	Clcn7	ClC-7|D17Wsu51e	chloride channel, voltage-sensitive 7	protein-coding	2.9479527523202	2.46795537663893	2.61905437375593	1.38697389486134	2.77180478866513	2.93451407662232	2.63992514191932	1.64850657063623	0.211573345770951	0.81262335414337	0.998431161219273
Merged-chr2-166176025-2	chr2	166175925	166176125	+	709.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20342.0	NM_028072	72043.0	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-16217016-2	chr18	16216916	16217116	+	789.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-498970.0	NM_199055	71367.0	Mm.329304	NM_199055	ENSMUSG00000047161	Chst9	5430438D01Rik	carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-80331715-4	chr12	80331617	80331817	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	59960.0	NR_037207	100526530.0		NR_037207	ENSMUSG00000105972	Mir1843a	Mir1843|mir-1843a|mmu-mir-1843|mmu-mir-1843a	microRNA 1843a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-44124491-1	chr16	44124391	44124591	+	569.0	f1_balb.idr	intron (NM_007508, intron 1 of 14)	MLT1L|LTR|ERVL-MaLR	14768.0	NM_001358203	11964.0	Mm.217787	NM_007508	ENSMUSG00000052459	Atp6v1a	AI647066|Atp6a1|Atp6a2|Atp6v1a1|VA68|VPP2	ATPase, H+ transporting, lysosomal V1 subunit A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-86545847-2	chr11	86545747	86545947	+	807.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199045, intron 1 of 9)	intron (NM_001199045, intron 1 of 9)	856.0	NM_001199046	56427.0	Mm.383207	NM_019756	ENSMUSG00000020513	Tubd1	4930550G19Rik|Tubd	tubulin, delta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-144906659-4	chr4	144906560	144906760	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357274, intron 2 of 6)	intron (NM_001357274, intron 2 of 6)	13523.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-84615231-3	chr7	84615127	84615327	+	771.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001360579, exon 7 of 7)	3' UTR (NM_001360579, exon 7 of 7)	-9285.0	NM_010176	14085.0	Mm.3798	NM_010176	ENSMUSG00000030630	Fah	swst	fumarylacetoacetate hydrolase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-96123114-2	chr9	96123014	96123214	+	613.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177352, intron 1 of 16)	intron (NM_177352, intron 1 of 16)	3685.0	NM_177352	235533.0	Mm.213651	NM_177352	ENSMUSG00000041440	Gk5	AV095337|C330018K18Rik|G630067D24Rik	glycerol kinase 5 (putative)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-146821518-2	chr5	146821316	146821516	+	814.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11474.0	NM_019647	19933.0	Mm.316592	NM_019647	ENSMUSG00000041453	Rpl21	8430440E03Rik|L21	ribosomal protein L21	protein-coding	0.550800528361858	0.916709381989168	0.474006401932367	0.291175857316826	0.283813099421698	0.665924895185054	0.877333457128226	0.292085392589848	-0.133400633380264	0.941217429255725	1
Merged-chr10-61722496-2	chr10	61722396	61722596	+	880.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153779, intron 1 of 8)	(GTTTG)n|Simple_repeat|Simple_repeat	1847.0	NM_153779	71361.0	Mm.286309	NM_153779	ENSMUSG00000020085	Aifm2	5430437E11Rik|Amid|D730001I10Rik|PRG3	apoptosis-inducing factor, mitochondrion-associated 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24474358-2	chr17	24474258	24474458	+	673.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001252463, exon 9 of 9)	3' UTR (NM_001252463, exon 9 of 9)	474.0	NM_175682	319259.0	Mm.258355	NM_175682	ENSMUSG00000045744	Bricd5	9930021D14Rik	BRICHOS domain containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133468760-2	chr4	133468682	133468882	+	812.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	-11351.0	NM_175307	100342.0	Mm.204656	NM_175307	ENSMUSG00000046694	Fam46b	4732473B16Rik|AU045678|AU046069	family with sequence similarity 46, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-163710993-4	chr2	163710885	163711085	+	938.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039390, intron 3 of 4)	intron (NM_001039390, intron 3 of 4)	16948.0	NM_011106	18769.0	Mm.10091	NM_011106	ENSMUSG00000035268	Pkig	PKIgamma	protein kinase inhibitor, gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-21372087-3	chr5	21371972	21372172	+	886.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008013)	promoter-TSS (NM_008013)	-601.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-76253305-3	chr11	76253200	76253400	+	972.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9564.0	NM_183263	67390.0	Mm.24886	NM_183263	ENSMUSG00000038046	Mrm3	4833420N02Rik|AI255153|HC90|Rnmtl1	mitochondrial rRNA methyltransferase 3	protein-coding	2.73409043071648	4.11187339457523	3.46834574948737	3.71187045316706	3.05747315292877	3.69391431775676	3.49545619026101	1.61835456204351	-0.656665606178428	0.342171758525018	0.843339514951349
Merged-chr3-127560714-4	chr3	127560653	127560853	+	911.7333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197997, intron 4 of 25)	intron (NM_197997, intron 4 of 25)	7264.0	NM_197997	71643.0	Mm.274884	NM_197997	ENSMUSG00000051278	Zgrf1	4930422G04Rik|AI448607	zinc finger, GRF-type containing 1	protein-coding	0.454009932617343	1.10780706191976	1.15870595453741	0.778873128144924	0.852497377345869	0.480741260936847	0.472582547034926	0.783845410419918	-1.37414298539698	0.413061534206017	1
Merged-chr4-63406549-2	chr4	63406449	63406649	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-3104.0	NM_001045514	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-27428784-4	chr14	27428688	27428888	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001114879)	promoter-TSS (NM_001114879)	-46.0	NM_028945	218850.0	Mm.247767	NM_028945	ENSMUSG00000040651	Fam208a	4732418E12|4933409E02Rik|D14Abb1e|MommeD6	family with sequence similarity 208, member A	protein-coding	3.24316958808404	4.01716677057762	3.43158304230945	3.50306413981781	3.27086224919901	3.12999874986386	4.15078531974172	4.2264185545298	0.31728031005578	0.558665677627288	0.960321604678676
Merged-chr15-53328240-3	chr15	53328150	53328350	+	778.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	17933.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-27030103-4	chr9	27030034	27030234	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178027)	promoter-TSS (NM_178027)	-40.0	NM_178027	69091.0	Mm.218717	NM_178027	ENSMUSG00000031988	Vps26b	1810012I05Rik|2310075A12Rik|AI848392	VPS26 retromer complex component B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28597499-1	chr7	28597399	28597599	+	548.0	f1_balb.idr	intron (NM_027470, intron 1 of 9)	intron (NM_027470, intron 1 of 9)	685.0	NM_027470	70584.0	Mm.21876	NM_027470	ENSMUSG00000030602	Pak4	5730488L07Rik|AW555722|mKIAA1142	p21 (RAC1) activated kinase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-40054145-2	chr10	40054045	40054245	+	639.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 4 of 5)	intron (NM_001114332, intron 4 of 5)	-28877.0	NM_144821	215929.0	Mm.55513	NM_144821	ENSMUSG00000038522	Mfsd4b1	AI317395|AI482555|Naglt1a	major facilitator superfamily domain containing 4B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131090395-4	chr1	131090293	131090493	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008551, intron 1 of 9)	intron (NM_008551, intron 1 of 9)	7450.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	0.688544149719698	0.936601277329797	1.3370069529497	1.39714837412312	1.11917915681023	0.942800194590963	0.714761951127791	1.58643007476199	0.0622576085967682	0.96571652446784	0.998431161219273
Merged-chr11-34213073-3	chr11	34212965	34213165	+	866.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4976.0	NM_023907	14233.0	Mm.32926	NM_023907	ENSMUSG00000047861	Foxi1	5830401E05Rik|FREAC6|Fkh10|HFH-3|Hfh3	forkhead box I1	protein-coding	0.750444181977023	0.808323454852908	1.6495828645922	0.775417485087066	0.95749789473967	2.05338372169553	1.87910909345112	1.48286063567748	2.08649067875291	0.136130349319711	0.576049352623289
Merged-chr7-143548319-4	chr7	143548207	143548407	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285489, intron 1 of 14)	intron (NM_001285489, intron 1 of 14)	521.0	NM_001285490	17955.0	Mm.294625	NM_008672	ENSMUSG00000059119	Nap1l4	2810410H14Rik|AI316776|D7Wsu30e|Nap2	nucleosome assembly protein 1-like 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-100439460-7	chr12	100439347	100439547	+	987.0476070000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033213, intron 5 of 19)	ORR1E|LTR|ERVL-MaLR	81375.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-105001571-4	chr3	105001462	105001662	+	962.033325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001163332)	TTS (NM_001163332)	-39853.0	NM_009520	22414.0	Mm.10740	NM_009520	ENSMUSG00000027840	Wnt2b	Wnt13	wingless-type MMTV integration site family, member 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-67583341-2	chr3	67583233	67583433	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025813, intron 1 of 15)	intron (NM_025813, intron 1 of 15)	565.0	NM_025813	66868.0	Mm.491153	NM_025813	ENSMUSG00000027775	Mfsd1	1200003O06Rik	major facilitator superfamily domain containing 1	protein-coding	2.91038281856157	3.60338435016025	3.623271841273	2.97138573078713	3.44089600268082	3.38390266954838	2.57329974368808	2.49094311386454	-0.440770205075744	0.490054458745273	0.934345795476137
Merged-chr6-97448780-2	chr6	97448680	97448880	+	716.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	10506.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-32617437-3	chr17	32617337	32617537	+	837.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MuLV-int|LTR|ERV1	-3882.0	NM_001100187	677156.0	Mm.484117	NM_001100187	ENSMUSG00000062464	Cyp4f37	Gm9705	cytochrome P450, family 4, subfamily f, polypeptide 37	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-70227003-4	chr12	70226946	70227146	+	924.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045174)	promoter-TSS (NR_045174)	637.0	NM_133198	110095.0	Mm.256926	NM_133198	ENSMUSG00000021069	Pygl	-	liver glycogen phosphorylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-106139387-2	chr1	106139287	106139487	+	595.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32137.0	NR_040630	626049.0	Mm.247410	NR_040630	ENSMUSG00000101583	Gm20753	-	predicted gene, 20753	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75348423-4	chr11	75348332	75348532	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001102611)	promoter-TSS (NM_001102611)	-1.0	NM_001102611	319822.0	Mm.340377	NM_177009	ENSMUSG00000018809	Smyd4	G430029E23Rik	SET and MYND domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89843333-4	chr3	89843239	89843439	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172530, intron 2 of 5)	intron (NM_172530, intron 2 of 5)	11969.0	NM_172530	214547.0	Mm.225	NM_172530	ENSMUSG00000046280	She	9430022A14	src homology 2 domain-containing transforming protein E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-28182103-4	chr15	28181986	28182186	+	888.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21680.0	NM_133365	110082.0	Mm.248464	NM_133365	ENSMUSG00000022262	Dnah5	AU022615|Dnahc5|Mdnah5|b2b1134Clo|b2b1154Clo|b2b1537Clo|b2b1565Clo|b2b3491Clo|b2b601Clo|mKIAA1603	dynein, axonemal, heavy chain 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-155382185-4	chr2	155382098	155382298	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178111, intron 1 of 3)	CpG	342.0	NM_178111	68728.0	Mm.293605	NM_178111	ENSMUSG00000038375	Trp53inp2	1110029F20Rik|Tp53inp2	transformation related protein 53 inducible nuclear protein 2	protein-coding	4.32335272045945	4.2337771901387	4.61772644964448	4.71676859764258	5.02574804720404	4.58678032679793	5.60767136779439	4.61068879873092	0.658897364238195	0.0795548390412231	0.429118200135331
Merged-chr5-34543319-4	chr5	34543231	34543431	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145858)	promoter-TSS (NM_001145858)	-34.0	NM_001145858	24055.0	Mm.5012	NM_011893	ENSMUSG00000054520	Sh3bp2	3BP2	SH3-domain binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-90466692-4	chr3	90466595	90466795	+	733.05835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008727)	promoter-TSS (NM_008727)	-829.0	NM_008727	18160.0	Mm.4627	NM_008727	ENSMUSG00000027931	Npr1	AI893888|GC-A|NPR-A|NPRA|Pndr	natriuretic peptide receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94526001-4	chr10	94525905	94526105	+	775.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172051, intron 1 of 3)	Tigger5|DNA|TcMar-Tigger	11148.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-95803356-3	chr10	95803256	95803456	+	866.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-137307.0	NM_001001932	216238.0	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-64667178-1	chr14	64667078	64667278	+	689.0	f0_balb.idr	intron (NM_001081177, intron 1 of 39)	intron (NM_001081177, intron 1 of 39)	14647.0	NM_001081177	16554.0	Mm.23611	NM_001081177	ENSMUSG00000060012	Kif13b	5330429L19Rik|6030414C01|AI429803|C130021D12Rik|GAKIN	kinesin family member 13B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-66856747-4	chr15	66856650	66856850	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24921.0	NM_009192	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-95046614-1	chr4	95046514	95046714	+	706.0	f0_balb.idr	Intergenic	Intergenic	5608.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102433759-2	chr12	102433659	102433859	+	828.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011175, intron 1 of 13)	PB1|SINE|Alu	6054.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-104074524-3	chr5	104074424	104074624	+	691.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163772, intron 4 of 9)	intron (NM_001163772, intron 4 of 9)	3084.0	NM_001163772	100271704.0	Mm.366664	NM_001163772	ENSMUSG00000091034	Gm17660	Scpppq1	predicted gene, 17660	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-54507785-4	chr9	54507673	54507873	+	995.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	-6147.0	NM_172771	235380.0	Mm.93636	NM_172771	ENSMUSG00000041268	Dmxl2	6330586A12|6430411K14Rik|E130119P06Rik|mKIAA0856	Dmx-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44231931-2	chr9	44231831	44232031	+	873.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_007619, intron 1 of 15)	Lx4A|LINE|L1	2115.0	NM_007619	12402.0	Mm.266871	NM_007619	ENSMUSG00000034342	Cbl	4732447J05Rik|Cbl-2|c-Cbl|cbl	Casitas B-lineage lymphoma	protein-coding	0.580458416618005	0.374510415582179	-0.121762373423896	-0.125597480975638	0.140607495517096	-0.115669861892943	-0.120665934242311	-0.124927528599947	-2.28064212795564	0.334845612842737	1
Merged-chr8-119798345-4	chr8	119798250	119798450	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19934.0	NM_028883	74347.0	Mm.358759	NM_028883	ENSMUSG00000034105	Tldc1	4632415K11Rik|Kiaa1609	TBC/LysM associated domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-77841408-4	chr15	77841304	77841504	+	992.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022410, intron 1 of 40)	CpG	771.0	NM_022410	17886.0	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-160269518-4	chr2	160269405	160269605	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57989.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-65971873-3	chr3	65971774	65971974	+	663.722229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR19A|LTR|ERVK	-13625.0	NM_001355432	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-14443169-2	chr19	14443069	14443269	+	544.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4663.0	NR_003027	19862.0		NR_003027	ENSMUSG00000095132	Rnu6	-	U6 small nuclear RNA	snRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-15506095-2	chr11	15505995	15506195	+	615.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus4|LINE|L1	-751629.0	NM_001290539	211739.0	Mm.284015	NM_145967	ENSMUSG00000048834	Vstm2a	Vstm2	V-set and transmembrane domain containing 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25306459-2	chr7	25306359	25306559	+	866.2999880000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_183311, intron 1 of 14)	intron (NM_183311, intron 1 of 14)	351.0	NM_183311	330485.0	Mm.260740	NM_183311	ENSMUSG00000043843	Tmem145	B930076A02Rik	transmembrane protein 145	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-9249876-4	chr13	9249781	9249981	+	938.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-26644.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-15065366-4	chr14	15065258	15065458	+	955.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	244543.0	NM_001195229	674895.0	Mm.317563	NM_001034865	ENSMUSG00000042567	Nek10	Gm282	NIMA (never in mitosis gene a)- related kinase 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-6827368-4	chr17	6827270	6827470	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44590.0	NM_009510	22350.0	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-161443883-4	chr1	161443752	161443952	+	952.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48414.0	NM_009452	22164.0	Mm.4994	NM_009452	ENSMUSG00000026700	Tnfsf4	Ath-1|Ath1|CD134L|OX-40L|Ox40l|TXGP1|Tnlg2b|Txgp1l|gp34	tumor necrosis factor (ligand) superfamily, member 4	protein-coding	2.77511756314889	3.1247610888313	2.25735981084398	1.22382144965072	2.79908570584228	2.61352271931221	1.26489586379226	1.49751638491232	-0.611962754748375	0.555949182488772	0.960313897742752
Merged-chr12-80810296-3	chr12	80810232	80810432	+	826.305542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001242419, intron 1 of 6)	intron (NM_001242419, intron 1 of 6)	19800.0	NM_001242419	217684.0	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-156614361-1	chr1	156614261	156614461	+	727.0	f0_balb.idr	intron (NM_001136104, intron 1 of 12)	intron (NM_001136104, intron 1 of 12)	55574.0	NM_001136104	11352.0	Mm.329515	NM_009595	ENSMUSG00000026596	Abl2	AA536808|Abll|Arg	v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)	protein-coding	2.15672455119414	1.84073119071929	2.33410575394354	1.90038679020507	2.43505752672509	2.43191230730163	1.60105112995105	2.4722165177495	0.527323208269735	0.555497080555613	0.959984728131301
Merged-chr3-90052658-4	chr3	90052590	90052790	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001165984)	promoter-TSS (NM_001165984)	-112.0	NM_001287086	99650.0	Mm.300083	NM_025762	ENSMUSG00000027942	4933434E20Rik	5730552F22Rik|AI462154|NICE-3|NS5ATP4	RIKEN cDNA 4933434E20 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-45735457-5	chr17	45735345	45735545	+	904.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152153, intron 1 of 4)	intron (NR_152153, intron 1 of 4)	939.0	NR_152153	433111.0	Mm.213441	NR_152153	ENSMUSG00000097727	F630040K05Rik	-	RIKEN cDNA F630040K05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-30520713-2	chr16	30520613	30520813	+	803.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357415, intron 10 of 11)	intron (NM_001357415, intron 10 of 11)	29865.0	NM_172614	224090.0	Mm.241459	NM_172614	ENSMUSG00000022537	Tmem44	1700007N03Rik|9330161C17Rik|B230220N21	transmembrane protein 44	protein-coding	0.592221290291217	0.000788397406717906	0.426150643302617	-0.0076302306544461	0.124467479567107	0.00186354989317605	0.167247381287839	0.149698814587002	-1.45846399350863	0.474757528268456	1
Merged-chr5-142499242-2	chr5	142499142	142499342	+	561.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310752, intron 5 of 14)	intron (NM_001310752, intron 5 of 14)	30834.0	NM_019943	56522.0	Mm.441372	NM_019943	ENSMUSG00000074817	Papolb	PAP|Paplob|Papola-ps|Papt|Plap-ps|Tpap	poly (A) polymerase beta (testis specific)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-121748510-4	chr11	121748393	121748593	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46066.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-87689037-4	chr16	87688934	87689134	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9920.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126769844-2	chr7	126769744	126769944	+	806.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_024228, intron 7 of 9)	intron (NM_024228, intron 7 of 9)	3430.0	NM_024228	68616.0	Mm.246881	NM_024228	ENSMUSG00000030703	Gdpd3	1110015E22Rik	glycerophosphodiester phosphodiesterase domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153319419-4	chr2	153319302	153319502	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008444, intron 2 of 8)	intron (NM_008444, intron 2 of 8)	26408.0	NR_040318	72326.0	Mm.400102	NR_040318	ENSMUSG00000073236	2500004C02Rik	-	RIKEN cDNA 2500004C02 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-45010971-4	chr4	45010835	45011035	+	843.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173399, intron 1 of 1)	intron (NM_173399, intron 1 of 1)	1477.0	NM_001163284	230119.0	Mm.44222	NM_173399	ENSMUSG00000049657	Zbtb5	5930421I10|9430083K24Rik|AI646847|mKIAA0354	zinc finger and BTB domain containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-35948411-1	chr3	35948311	35948511	+	750.0	f0_balb.idr	Intergenic	RLTR20C2_MM|LTR|ERVK	-15445.0	NM_001205361	114893.0	Mm.374810	NM_033623	ENSMUSG00000027708	Dcun1d1	Rp42|SCCRO|Tes3|pTes3	DCN1, defective in cullin neddylation 1, domain containing 1 (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-95298027-4	chr10	95297916	95298116	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001330138, intron 2 of 2)	intron (NM_001330138, intron 2 of 2)	25693.0	NM_001330138	12905.0	Mm.473739	NM_009950	ENSMUSG00000045867	Cradd	RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47923269-2	chr17	47923169	47923369	+	705.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_028767, intron 1 of 16)	intron (NM_028767, intron 1 of 16)	1363.0	NM_028767	74123.0	Mm.240062	NM_028767	ENSMUSG00000023991	Foxp4	1200010K03Rik|2310007G05Rik|mFKHLA	forkhead box P4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-17001706-2	chr11	17001606	17001806	+	550.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019549, intron 1 of 9)	MLTR14|LTR|ERV1	7012.0	NM_019549	56193.0	Mm.98232	NM_019549	ENSMUSG00000020120	Plek	2010300B13Rik	pleckstrin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115634456-1	chr5	115634356	115634556	+	559.0	f1_balb.idr	intron (NM_198163, intron 1 of 5)	intron (NM_198163, intron 1 of 5)	2469.0	NM_198163	77407.0	Mm.27553	NM_198163	ENSMUSG00000029518	Rab35	9530019H02Rik|AU040256|H-ray|RAB1C|RAY	RAB35, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96160381-4	chr3	96160286	96160486	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001025614, exon 12 of 12)	3' UTR (NM_001025614, exon 12 of 12)	-1584.0	NM_181409	194126.0	Mm.268536	NM_181409	ENSMUSG00000045934	Mtmr11	AI035306|BC051083|Cra	myotubularin related protein 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-65335712-4	chr5	65335629	65335829	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347358)	promoter-TSS (NM_001347358)	-90.0	NM_001347358	19687.0	Mm.148877	NM_011258	ENSMUSG00000029191	Rfc1	140kDa|Alp145|RFC140|Recc1	replication factor C (activator 1) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-31005073-4	chr17	31004981	31005181	+	962.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177465, intron 20 of 21)	intron (NM_177465, intron 20 of 21)	50398.0	NM_177465	52020.0	Mm.25923	NM_177465	ENSMUSG00000054134	Umodl1	D17Ertd488e	uromodulin-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-25666878-2	chr14	25666778	25666978	+	963.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001310666)	TTS (NM_001310666)	-27292.0	NM_134084	105675.0	Mm.41656	NM_134084	ENSMUSG00000021868	Ppif	AW457192|CyP-D|CyP-F|CypD|PPIase	peptidylprolyl isomerase F (cyclophilin F)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-47793463-2	chr6	47793363	47793563	+	912.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6A|LTR|ERVK	10189.0	NR_030485	735289.0		NR_030485	ENSMUSG00000076060	Mir704	Mirn704|mir-704|mmu-mir-704	microRNA 704	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-61514623-3	chr9	61514525	61514725	+	749.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11B|LTR|ERVK	142259.0	NM_001083927	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-50236757-4	chr11	50236665	50236865	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132732, intron 4 of 4)	CpG	1767.0	NM_001313968	17001.0	Mm.245151	NM_008521	ENSMUSG00000020377	Ltc4s	-	leukotriene C4 synthase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-31071073-4	chr17	31070987	31071187	+	988.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009593, intron 2 of 14)	intron (NM_009593, intron 2 of 14)	13393.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-40526747-2	chr3	40526647	40526847	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4|SINE|ID	-3835.0	NR_040445	100040882.0	Mm.272869	NR_040445	ENSMUSG00000037884	1700017G19Rik	-	RIKEN cDNA 1700017G19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-35557024-4	chr8	35556929	35557129	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30769.0	NM_001081279	52065.0	Mm.103246	NM_001081279	ENSMUSG00000070056	Mfhas1	2310066G09Rik|D8Ertd91e	malignant fibrous histiocytoma amplified sequence 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-165609784-3	chr1	165609707	165609907	+	887.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083897, intron 1 of 5)	B1_Mm|SINE|Alu	24734.0	NM_001001880	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-174043882-4	chr1	174043779	174043979	+	922.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_146717)	TTS (NM_146717)	1946.0	NM_146717	258712.0	Mm.223146	NM_146717	ENSMUSG00000045381	Olfr433	MOR123-1	olfactory receptor 433	protein-coding	4.50572008059406	3.71851013352223	3.67716844545029	3.65135350920973	4.68899775419172	3.74592420214977	3.62088014109076	3.32152736955757	0.0231722951287628	0.964624938857862	0.998431161219273
Merged-chr5-135468019-2	chr5	135467919	135468119	+	796.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_146001, intron 1 of 30)	intron (NM_146001, intron 1 of 30)	-73473.0	NM_148932	107939.0	Mm.28399	NM_148932	ENSMUSG00000053293	Pom121	2610027A18Rik|C80273|mKIAA0618	nuclear pore membrane protein 121	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-118849078-3	chr12	118849004	118849204	+	696.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177082, exon 3 of 3)	exon (NM_177082, exon 3 of 3)	2775.0	NM_177082	320145.0	Mm.51682	NM_177082	ENSMUSG00000048562	Sp8	D930049B17Rik|mBtd	trans-acting transcription factor 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-13950827-4	chr13	13950815	13951015	+	846.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3759.0	NM_001362404	97884.0	Mm.21686	NM_178640	ENSMUSG00000039242	B3galnt2	A930105D20Rik|C80633|D230016N13Rik	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-108592203-2	chr8	108592103	108592303	+	969.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7526.0	NR_077224	109215.0	Mm.65282	NR_077224	ENSMUSG00000110613	Lncbate1	3010033K07Rik|Lnc-BATE1	brown adipose tissue enriched long non-coding RNA 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-45689652-1	chr14	45689552	45689752	+	640.0	f1_c57bl6.idr	Intergenic	Intergenic	-31509.0	NM_001042719	114874.0	Mm.121918	NM_176845	ENSMUSG00000037697	Ddhd1	Mir5131|PA-PLA1	DDHD domain containing 1	protein-coding	0.905034055026508	0.413885234123649	1.01154253161051	0.678191299039677	0.744503715746685	0.415144976185158	0.570744193296048	0.404817890716654	-1.60994174200417	0.361100090298566	1
Merged-chr9-60521889-2	chr9	60521789	60521989	+	841.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-10854.0	NM_001040426	207596.0	Mm.28791	NM_172444	ENSMUSG00000032289	Thsd4	ADAMTSL-6|ADAMTSL6|AI585901|Adamtsl4|B230114P05Rik	thrombospondin, type I, domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-63400072-6	chr4	63399940	63400140	+	884.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045514, intron 1 of 21)	intron (NM_001045514, intron 1 of 21)	-1800.0	NM_001305432	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-58502091-4	chr16	58502003	58502203	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357433, intron 2 of 10)	intron (NM_001357433, intron 2 of 10)	21323.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-46922133-2	chr7	46922033	46922233	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR49|LTR|ERVK	-2164.0	NM_021884	22088.0	Mm.241334	NM_021884	ENSMUSG00000014402	Tsg101	AI255943|CC2	tumor susceptibility gene 101	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-41017173-4	chr13	41017041	41017241	+	856.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_025387, exon 2 of 6)	5' UTR (NM_025387, exon 2 of 6)	891.0	NM_001360770	66154.0	Mm.30005	NM_025387	ENSMUSG00000021361	Tmem14c	1110021D01Rik|AU020193|HSPC194	transmembrane protein 14C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30656564-2	chr2	30656464	30656664	+	595.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21447.0	NR_136917	665635.0	Mm.450149	NR_136917		Gm14486	-	predicted gene 14486	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59863786-1	chr15	59863686	59863886	+	605.0	f1_c57bl6.idr	Intergenic	Lx2A1|LINE|L1	-68827.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	2.35530797018689	3.48631275493095	2.77425160914211	2.69777286132573	2.1287479360172	2.77377787551338	2.89778037894009	2.71136233535093	-0.501305486209369	0.494666035007842	0.935679785535167
Merged-chr2-181581180-4	chr2	181581099	181581299	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001164597)	TTS (NM_001164597)	774.0	NM_026765	68556.0	Mm.232400	NM_026765	ENSMUSG00000089917	Uckl1	1110007H10Rik|Urkl1	uridine-cytidine kinase 1-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-135297346-1	chr6	135297246	135297446	+	821.0	f1_c57bl6.idr	Intergenic	Intergenic	13038.0	NM_029595	76400.0	Mm.293018	NM_029595	ENSMUSG00000047104	Pbp2	1700023A18Rik|AI326308|Pebp-2|Pebp2	phosphatidylethanolamine binding protein 2	protein-coding	1.30912548879468	0.490511298830059	1.09488183804039	0.47398776688103	0.9893587042523	1.03134914595522	0.483274573242018	0.475254639982498	-0.621593627240726	0.723768513922008	1
Merged-chr13-22043101-4	chr13	22042994	22043194	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178198)	promoter-TSS (NM_178198)	-136.0	NM_178198	319183.0	Mm.371766	NM_178198	ENSMUSG00000069300	Hist1h2bj	-	histone cluster 1, H2bj	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47429067-3	chr17	47428971	47429171	+	859.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029296, intron 3 of 3)	intron (NM_029296, intron 3 of 3)	-7191.0	NM_001347584	75462.0	Mm.46129	NM_029296	ENSMUSG00000047150	1700001C19Rik	-	RIKEN cDNA 1700001C19 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-8868166-2	chr5	8868066	8868266	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25555.0	NM_008830	18670.0	Mm.297825	NM_008830	ENSMUSG00000042476	Abcb4	Mdr2|Pgy-2|Pgy2|mdr-2	ATP-binding cassette, sub-family B (MDR/TAP), member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-125604470-2	chr7	125604370	125604570	+	670.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021887, intron 1 of 8)	intron (NM_021887, intron 1 of 8)	1041.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	-2.18292257394068	-2.15545247547656	-2.03304972317742	-2.17058342868585	-2.18099422382073	-2.1536522739386	-2.16187909550322	-2.16936197735154	-0.683654500252594	0.846597994014493	1
Merged-chr4-133176203-4	chr4	133176111	133176311	+	864.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153423, intron 1 of 8)	intron (NM_153423, intron 1 of 8)	-19444.0	NR_105984	102466215.0		NR_105984	ENSMUSG00000099202	Mir7017	Gm27945|mmu-mir-7017	microRNA 7017	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3868273-4	chr12	3868198	3868398	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007872, intron 4 of 22)	intron (NM_007872, intron 4 of 22)	-6054.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-120570428-4	chr5	120570343	120570543	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145853, intron 2 of 27)	intron (NM_145853, intron 2 of 27)	18170.0	NM_145853	252972.0	Mm.114054	NM_145853	ENSMUSG00000032741	Tpcn1	5730403B01Rik|Tpc1|mKIAA1169	two pore channel 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-35211725-7	chr2	35211622	35211822	+	878.496582	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB3|LINE|L1	-10602.0	NM_026697	68365.0	Mm.198264	NM_026697	ENSMUSG00000026878	Rab14	0610030G24Rik|2810475J17Rik|A830021G03Rik|AI314285|AI649155|D030017L14Rik	RAB14, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-88045879-2	chr11	88045779	88045979	+	545.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1494.0	NM_001078167	110809.0	Mm.391719	NM_173374	ENSMUSG00000018379	Srsf1	1110054N12Rik|5730507C05Rik|6330415C05Rik|AI482334|AW491331|Asf|Sf2|Sfrs1	serine/arginine-rich splicing factor 1	protein-coding	-1.22315906685268	-1.19557143632602	-1.20673282037136	-0.55836125556573	-1.22265483704505	-1.19315271784257	-1.20420612767407	-1.21425999345206	-2.67891099987134	0.437057736398543	1
Merged-chr8-13651562-2	chr8	13651462	13651662	+	727.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 1 of 23)	intron (NM_009025, intron 1 of 23)	26025.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-182512012-4	chr1	182511916	182512116	+	976.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009794, intron 2 of 20)	intron (NM_009794, intron 2 of 20)	5594.0	NM_009794	12334.0	Mm.19306	NM_009794	ENSMUSG00000026509	Capn2	AI326419|CALP80|Capa-2|Capa2|m-calpain|m-calpin	calpain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133185433-4	chr4	133185342	133185542	+	943.491699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153423, intron 3 of 8)	intron (NM_153423, intron 3 of 8)	-10213.0	NR_105984	102466215.0		NR_105984	ENSMUSG00000099202	Mir7017	Gm27945|mmu-mir-7017	microRNA 7017	ncRNA	0.962958677886039	0.80403299541964	2.52339730461751	1.25929116405953	0.973413503956768	0.810761169277035	3.02786106078848	1.26786366798497	0.673355180948362	0.600583131622695	0.972964840983327
Merged-chr1-23383365-4	chr1	23383264	23383464	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081079)	promoter-TSS (NM_001081079)	-189.0	NM_001081079	70155.0	Mm.28013	NM_001081079	ENSMUSG00000026158	Ogfrl1	2210417C17Rik	opioid growth factor receptor-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-168543530-2	chr2	168543430	168543630	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037177, intron 3 of 6)	intron (NM_001037177, intron 3 of 6)	46835.0	NM_001291178	18019.0	Mm.116802	NM_010899	ENSMUSG00000027544	Nfatc2	AI607462|NF-ATc2|NF-ATp|NFAT1|NFAT1-D|Nfatp	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83639853-4	chr11	83639750	83639950	+	892.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9528.0	NM_011337	20302.0	Mm.1282	NM_011337	ENSMUSG00000000982	Ccl3	AI323804|G0S19-1|LD78alpha|MIP-1alpha|MIP1-(a)|MIP1-alpha|Mip1a|Scya3	chemokine (C-C motif) ligand 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4287686-2	chr19	4287586	4287786	+	545.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_130863, exon 20 of 22)	exon (NM_130863, exon 20 of 22)	-4549.0	NM_026720	68423.0	Mm.23642	NM_026720	ENSMUSG00000005986	Ankrd13d	0710001P18Rik|AI430801	ankyrin repeat domain 13 family, member D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117853227-2	chr11	117853127	117853327	+	856.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001012273, exon 3 of 3)	3' UTR (NM_001012273, exon 3 of 3)	3990.0	NM_009689	11799.0	Mm.8552	NM_009689	ENSMUSG00000017716	Birc5	AAC-11|Api4|TIAP|survivin40	baculoviral IAP repeat-containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44847082-2	chr7	44846982	44847182	+	616.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001042655, intron 3 of 16)	intron (NM_001042655, intron 3 of 16)	1997.0	NM_001042655	233204.0	Mm.27567	NM_144924	ENSMUSG00000038520	Tbc1d17	BC017607	TBC1 domain family, member 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-53773783-2	chr11	53773683	53773883	+	744.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_001159396, exon 4 of 10)	exon (NM_001159396, exon 4 of 10)	3310.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-15045420-6	chr9	15045268	15045468	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_019482, exon 1 of 5)	5' UTR (NM_019482, exon 1 of 5)	110.0	NM_019482	55991.0	Mm.142253	NM_019482	ENSMUSG00000031934	Panx1	AI847747	pannexin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-137747172-2	chr5	137747072	137747272	+	959.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_029805, exon 2 of 6)	exon (NM_029805, exon 2 of 6)	1203.0	NM_029805	78829.0	Mm.286399	NM_023910	ENSMUSG00000029723	Tsc22d4	0610009M14Rik|1700023B23Rik|AI415410|Thg-1pit|Tilz2	TSC22 domain family, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-58496541-1	chr10	58496441	58496641	+	547.0	f1_c57bl6.idr	Intergenic	Intergenic	-1396.0	NM_001162956	76138.0	Mm.211744	NM_001162956	ENSMUSG00000038010	Ccdc138	6230424H07Rik|BC042726	coiled-coil domain containing 138	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-31045773-1	chr5	31045673	31045873	+	663.0	f1_balb.idr	intron (NM_001360022, intron 2 of 17)	B1_Mus2|SINE|Alu	2306.0	NM_177870	330064.0	Mm.205463	NM_177870	ENSMUSG00000006641	Slc5a6	E430023I20	solute carrier family 5 (sodium-dependent vitamin transporter), member 6	protein-coding	-0.212704608787294	-0.188238250935872	0.365350269500744	-0.202271567001369	-0.211136544950964	-0.186483752115598	1.08134278886318	-0.201188086249184	1.79135831152016	0.447165748334765	1
Merged-chr15-21086117-1	chr15	21086017	21086217	+	540.0	f1_c57bl6.idr	Intergenic	Lx|LINE|L1	-25335.0	NM_001008420	215654.0	Mm.300909	NM_001008420	ENSMUSG00000040452	Cdh12	Cdhb	cadherin 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-42827978-2	chr13	42827867	42828067	+	608.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001005740, intron 1 of 12)	PB1D7|SINE|Alu	-38280.0	NM_001302636	218194.0	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-116492449-2	chr7	116492349	116492549	+	639.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11920.0	NM_001130479	53322.0	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-47091518-1	chr14	47091418	47091618	+	558.0	f1_c57bl6.idr	intron (NM_001037221, intron 11 of 12)	intron (NM_001037221, intron 11 of 12)	22541.0	NM_001310544	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	-1.06932346315282	-1.04545378193536	-0.220844647149311	-1.06494782147003	-1.06867040657128	-1.04264807175102	-1.05547001227371	-1.06448932552894	-3.08190232315036	0.346744811462451	1
Merged-chr8-86611002-3	chr8	86610899	86611099	+	709.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	-13044.0	NM_025827	66887.0	Mm.324550	NM_025827	ENSMUSG00000047866	Lonp2	1300002A08Rik|AU015403|Lonp	lon peptidase 2, peroxisomal	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-111043071-2	chr9	111042971	111043171	+	639.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_008522)	TTS (NM_008522)	14173.0	NM_001302377	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-77806550-3	chr14	77806477	77806677	+	844.650024	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-7609.0	NM_001033440	380920.0	Mm.297771	NM_001033440	ENSMUSG00000075512	Gm1587	-	predicted gene 1587	protein-coding	0.232531926147455	0.228439078735974	0.0625835811605675	0.284622864802319	0.0265764032948563	-0.0913869565461209	-0.0954274686210103	-0.0988516009300722	-2.82089214530761	0.176853751851908	1
Merged-chr18-5094016-2	chr18	5093916	5094116	+	696.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347449, intron 16 of 30)	intron (NM_001347449, intron 16 of 30)	47427.0	NM_001347449	225115.0	Mm.136791	NM_153153	ENSMUSG00000024236	Svil	AU024053|B430302E16Rik	supervillin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-77856790-4	chr18	77856688	77856888	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013831, intron 5 of 14)	intron (NM_013831, intron 5 of 14)	-60398.0	NR_152167	619308.0	Mm.490456	NM_001033812		F830208F22Rik	-	RIKEN cDNA F830208F22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-10323455-2	chr10	10323355	10323555	+	650.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	148859.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-40449430-3	chr8	40449321	40449521	+	874.3777470000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357249, intron 3 of 12)	intron (NM_001357249, intron 3 of 12)	25606.0	NM_001357249	70546.0	Mm.34326	NM_178395	ENSMUSG00000039470	Zdhhc2	5730415P04Rik|6430583A19Rik|DHHC-2	zinc finger, DHHC domain containing 2	protein-coding	0.360951836737155	0.235747590729811	0.408217643542474	0.654076910097723	0.604527705457565	0.237222516642671	1.01142238755516	0.225018191718878	0.916461694966493	0.619082142328526	1
Merged-chr2-167970933-2	chr2	167970833	167971033	+	553.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011201, intron 4 of 8)	intron (NM_011201, intron 4 of 8)	38606.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-70601522-2	chr18	70601422	70601622	+	708.299988	f1_balb.idr|f1_c57bl6.idr	intron (NM_010773, intron 3 of 6)	intron (NM_010773, intron 3 of 6)	33230.0	NM_010773	17191.0	Mm.322	NM_010773	ENSMUSG00000024513	Mbd2	MBD2a	methyl-CpG binding domain protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27547580-2	chr2	27547480	27547680	+	872.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	32433.0	NM_080848	140858.0	Mm.28265	NM_080848	ENSMUSG00000026917	Wdr5	2410008O07Rik|AA408785|AA960360|Big|Big-3	WD repeat domain 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-88731936-4	chr9	88731845	88732045	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007536)	promoter-TSS (NM_007536)	-95.0	NM_007536	12047.0	Mm.378888	NM_007536	ENSMUSG00000099974	Bcl2a1d	A1-d	B cell leukemia/lymphoma 2 related protein A1d	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-22550382-4	chr5	22550287	22550487	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_102315)	promoter-TSS (NR_102315)	-26.0	NR_102315	320719.0	Mm.459265	NR_102315	ENSMUSG00000097207	6030443J06Rik	1700030G06Rik	RIKEN cDNA 6030443J06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-32644356-3	chr16	32644266	32644466	+	863.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016788)	promoter-TSS (NM_016788)	-277.0	NM_001110147	51789.0	Mm.251115	NM_016788	ENSMUSG00000022791	Tnk2	Ack|Ack-1|Ack1|Cdgip|Pyk1	tyrosine kinase, non-receptor, 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-51655263-2	chr13	51655163	51655363	+	590.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001308448, intron 4 of 16)	intron (NM_001308448, intron 4 of 16)	3555.0	NM_029279	75420.0	Mm.275981	NM_029279	ENSMUSG00000035139	Secisbp2	2210413N07Rik|2810012K13Rik|SBP2	SECIS binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-149315083-4	chr6	149314974	149315174	+	819.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026054, intron 2 of 4)	intron (NM_026054, intron 2 of 4)	5660.0	NM_001289662	67246.0	Mm.333515	NM_026054	ENSMUSG00000032712	2810474O19Rik	6720435I21Rik|AA536804|AU020969|GET|Kiaa1551	RIKEN cDNA 2810474O19 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-125707805-4	chr7	125707724	125707924	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207239)	promoter-TSS (NM_207239)	-46.0	NM_001081022	233865.0	Mm.274389	NM_001081022	ENSMUSG00000032743	D430042O09Rik	Kiaa0556	RIKEN cDNA D430042O09 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-161889103-1	chr1	161889003	161889203	+	545.0	f1_c57bl6.idr	Intergenic	Intergenic	-12421.0	NM_001357402	226551.0	Mm.170002	NM_172645	ENSMUSG00000040297	Suco	4732491B11|AI848100|AU016931|Opt	SUN domain containing ossification factor	protein-coding	1.87216741302862	1.6569845401328	1.76745636242878	2.08018767011105	1.33997928380973	2.23579333925096	1.4252252011183	2.43485307229762	0.294646247953449	0.773508567681725	0.998431161219273
Merged-chr13-59856927-4	chr13	59856850	59857050	+	963.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33803.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	2.7236301021306	3.21697218953573	3.74384524585402	3.00950195355307	3.55158468067748	4.09980135272362	3.90855834301518	4.42577978438408	1.2012235124275	0.0247938807414564	0.208122887921637
Merged-chr3-96639408-3	chr3	96639310	96639510	+	785.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011069, intron 3 of 3)	B3|SINE|B2	3563.0	NM_001162388	18632.0	Mm.20901	NM_011069	ENSMUSG00000028102	Pex11b	PEX11beta|Pex11pbeta	peroxisomal biogenesis factor 11 beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90479942-4	chr2	90479841	90480041	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001135657)	promoter-TSS (NM_001135657)	-767.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-40573825-4	chr6	40573720	40573920	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	2432.0	NM_146383	258381.0	Mm.377469	NM_146383	ENSMUSG00000045514	Olfr460	MOR120-2	olfactory receptor 460	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-29378134-1	chr17	29378034	29378234	+	681.0	f1_c57bl6.idr	intron (NM_001159538, intron 14 of 15)	ID_B1|SINE|B4	17220.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	1.33389763315307	0.735545614449184	1.2341959834335	1.31394983800521	1.13797144437384	0.738245314328899	0.726146202058428	1.69363680180581	-0.0938466779970772	0.949505148076816	0.998431161219273
Merged-chr17-24887633-4	chr17	24887551	24887751	+	743.0625	f1_balb.idr|f1_c57bl6.idr	intron (NM_027141, intron 1 of 6)	intron (NM_027141, intron 1 of 6)	170.0	NM_027141	79043.0	Mm.274794	NM_027141	ENSMUSG00000024160	Spsb3	2310012N15Rik|3300001M01Rik|SSB3|Tce1|mKIAA4204	splA/ryanodine receptor domain and SOCS box containing 3	protein-coding	-1.27019771385087	-1.24210814412887	-1.25266437872947	-1.26133558413341	-1.26974192642364	-1.07372280185361	-1.25027467860197	-0.824525533001554	2.50806194279963	0.447256732080241	1
Merged-chr7-121047467-2	chr7	121047367	121047567	+	983.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_021554, intron 1 of 4)	B2_Mm2|SINE|B2	13022.0	NM_021554	59052.0	Mm.29122	NM_021554	ENSMUSG00000030876	Mettl9	0610012D09Rik|AA517660|Drev|MNCb-5680	methyltransferase like 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-20731428-4	chr14	20731349	20731549	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010811, intron 2 of 14)	intron (NM_010811, intron 2 of 14)	3113.0	NM_010811	17423.0	Mm.4084	NM_010811	ENSMUSG00000039308	Ndst2	Mndns|NDST-2	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-88511478-4	chr17	88511383	88511583	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18641.0	NM_028658	73825.0	Mm.271817	NM_028658	ENSMUSG00000034709	Ppp1r21	1110018J12Rik|AI426045|AW550781|Ccdc128|Klraq1	protein phosphatase 1, regulatory subunit 21	protein-coding	3.9390169662632	4.3368437404614	4.60691316763803	4.14366927997703	3.8536258646492	4.42642585412286	4.63914394260083	4.10573136525681	0.0108478996205457	0.979369242652532	0.998431161219273
Merged-chr12-16894766-7	chr12	16894659	16894859	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009072)	promoter-TSS (NM_009072)	-219.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	5.01855142441572	4.30722736849363	5.06607020557567	4.63495691828891	5.22976783770497	4.69880988152196	4.65340774331677	4.19559859255782	-0.0545530985119177	0.884782897849851	0.998431161219273
Merged-chr17-57334963-4	chr17	57334847	57335047	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23739.0	NM_001355723	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85446361-2	chr12	85446261	85446461	+	711.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-27529.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72051947-3	chr6	72051843	72052043	+	915.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9415.0	NR_046180	330350.0	Mm.246787	NR_046180	ENSMUSG00000108356	9130221F21Rik	9130221F21	RIKEN cDNA 9130221F21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-75515358-2	chr10	75515258	75515458	+	912.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347201, intron 1 of 5)	intron (NM_001347201, intron 1 of 5)	2023.0	NM_175133	68778.0	Mm.29382	NM_175133	ENSMUSG00000033416	Gucd1	1110038D17Rik	guanylyl cyclase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-39207021-4	chr6	39206961	39207161	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033430)	promoter-TSS (NM_001033430)	-288.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94038724-1	chr10	94038624	94038824	+	719.5	f0_c57.idr	intron (NM_053072, intron 1 of 20)	RSINE1|SINE|B4	2723.0	NM_053072	13998.0	Mm.269596	NM_053072	ENSMUSG00000020021	Fgd6	AA123052|Etohd4|ZFYVE24	FYVE, RhoGEF and PH domain containing 6	protein-coding	2.01119323777853	2.36853431894678	1.63919952652901	2.39303757425966	1.925238261717	1.49515017111792	1.21457566352204	2.23167927978652	-0.940027930573597	0.358996914841222	0.856306289008338
Merged-chr9-103012740-2	chr9	103012640	103012840	+	712.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_033314, intron 1 of 13)	B4|SINE|B4	4251.0	NM_033314	24059.0	Mm.207106	NM_033314	ENSMUSG00000032548	Slco2a1	2310021C19Rik|Pgt|Slc21a2|mPgt	solute carrier organic anion transporter family, member 2a1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166375810-2	chr2	166375710	166375910	+	811.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20C2_MM|LTR|ERVK	-71641.0	NR_015558	319684.0	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59706194-2	chr15	59706094	59706294	+	675.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57540.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-30925743-1	chr16	30925643	30925843	+	577.0	f0_balb.idr	Intergenic	Intergenic	155689.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-50224535-2	chr16	50224435	50224635	+	652.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001347240, exon 12 of 17)	exon (NM_001347240, exon 12 of 17)	-151683.0	NR_045935	224180.0	Mm.146439	NM_175010		Gm4827	B130050K08|EG224180	predicted gene 4827	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-49981930-2	chr11	49981830	49982030	+	809.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43401.0	NM_021540	59044.0	Mm.359004	NM_021540	ENSMUSG00000020376	Rnf130	2510042A13Rik|G1RZFP|G1rp|GOLIATH|GP	ring finger protein 130	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-113479441-4	chr13	113479323	113479523	+	935.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045501, intron 3 of 6)	intron (NR_045501, intron 3 of 6)	23421.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-75938475-4	chr2	75938367	75938567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028235)	promoter-TSS (NM_028235)	-5.0	NM_028235	72421.0	Mm.275109	NM_028235	ENSMUSG00000075273	Ttc30b	2510042P03Rik|Tcc30b	tetratricopeptide repeat domain 30B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-77704511-4	chr18	77704416	77704616	+	997.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178670, intron 1 of 4)	L1MC5|LINE|L1	9494.0	NM_178670	212163.0	Mm.23293	NM_178670	ENSMUSG00000047466	8030462N17Rik	Akd2|Ark2N	RIKEN cDNA 8030462N17 gene	protein-coding	4.12451325425889	4.09818387835225	4.16752253331592	4.38528377509974	4.89803096597011	4.67745453956683	3.9149416756517	4.89001765175805	0.58548168861992	0.144480185829779	0.594062121173986
Merged-chr8-26184393-2	chr8	26184293	26184493	+	675.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26224.0	NM_199042	73754.0	Mm.383241	NM_199042	ENSMUSG00000037214	Thap1	4833431A01Rik|AW490810	THAP domain containing, apoptosis associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-4314109-4	chr18	4314022	4314222	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38831.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-98924782-2	chr4	98924682	98924882	+	796.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356424, intron 1 of 7)	intron (NM_001356424, intron 1 of 7)	972.0	NM_001356424	230484.0	Mm.371692	NM_146144	ENSMUSG00000028560	Usp1	-	ubiquitin specific peptidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-73037110-4	chr17	73036990	73037190	+	846.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70895.0	NM_001177968	225010.0	Mm.329194	NM_001081071	ENSMUSG00000054469	Lclat1	AI181996|Agpat8|Alcat1|Gm91|Lycat	lysocardiolipin acyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-11706903-3	chr2	11706811	11707011	+	853.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271499, intron 1 of 6)	intron (NM_001271499, intron 1 of 6)	1199.0	NM_001271500	16169.0	Mm.200196	NM_008358	ENSMUSG00000023206	Il15ra	AA690181|IL-15RA	interleukin 15 receptor, alpha chain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-53068387-6	chr6	53068413	53068613	+	851.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_173406, exon 1 of 5)	exon (NM_173406, exon 1 of 5)	111.0	NM_173406	231986.0	Mm.386865	NM_173406	ENSMUSG00000063568	Jazf1	AI591476|C820002C15|Jaz1|Tip27	JAZF zinc finger 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-50110742-1	chr17	50110642	50110842	+	596.5	f0_balb.idr	intron (NM_181397, intron 2 of 9)	intron (NM_181397, intron 2 of 9)	79755.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69752892-2	chr11	69752792	69752992	+	685.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291068, intron 1 of 28)	B3A|SINE|B2	5741.0	NM_001291068	20020.0	Mm.16533	NM_009089	ENSMUSG00000005198	Polr2a	220kDa|Rpb1|Rpo2-1	polymerase (RNA) II (DNA directed) polypeptide A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-40480217-1	chr1	40480117	40480317	+	570.0	f0_balb.idr	intron (NM_001161842, intron 5 of 9)	intron (NM_001161842, intron 5 of 9)	14211.0	NM_008365	16182.0	Mm.253664	NM_008365	ENSMUSG00000026070	Il18r1	Il18ralpha|Il1rrp	interleukin 18 receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135133327-2	chr5	135133227	135133427	+	869.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_152880, exon 11 of 17)	non-coding (NR_152880, exon 11 of 17)	-16384.0	NM_013763	27368.0	Mm.36746	NM_013763	ENSMUSG00000005374	Tbl2	C76179|WS-bTRP	transducin (beta)-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-41566287-2	chr12	41566187	41566387	+	679.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_053122, intron 4 of 6)	intron (NM_053122, intron 4 of 6)	-80230.0	NM_010733	16981.0	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-97192859-3	chr13	97192757	97192957	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010422, intron 2 of 13)	intron (NM_010422, intron 2 of 13)	5500.0	NM_010422	15212.0	Mm.27816	NM_010422	ENSMUSG00000021665	Hexb	-	hexosaminidase B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-35596678-3	chr8	35596590	35596790	+	693.5	f0_balb.idr|f0_c57.idr|f1_balb.idr	intron (NM_001081279, intron 1 of 2)	intron (NM_001081279, intron 1 of 2)	-7670.0	NR_040376	100504714.0	Mm.381744	NR_040376	ENSMUSG00000097357	Gm16793	-	predicted gene, 16793	ncRNA	1.97942717671051	1.57576712231084	1.52649804280962	1.8898439428562	2.15709765902839	2.25256069826974	1.3470005541764	1.09617190933428	0.181990760636987	0.869572486089145	0.998431161219273
Merged-chr1-183956616-1	chr1	183956516	183956716	+	546.0	f1_c57bl6.idr	Intergenic	Intergenic	77382.0	NM_028516	73363.0	Mm.50115	NM_028516	ENSMUSG00000044854	1700056E22Rik	-	RIKEN cDNA 1700056E22 gene	protein-coding	0.970245316574974	0.467448014338365	0.461428492137212	1.11628637636111	1.11843984534986	0.468811590117927	0.462751960948763	0.608663319558258	-0.510141312092478	0.780580370508389	1
Merged-chr5-117878407-1	chr5	117878307	117878507	+	559.0	f1_c57bl6.idr	intron (NM_008712, intron 1 of 27)	intron (NM_008712, intron 1 of 27)	11568.0	NM_008712	18125.0	Mm.44249	NM_008712	ENSMUSG00000029361	Nos1	2310005C01Rik|N-NOS|NC-NOS|NO|NOS|NOS-I|Nos-1|bNOS|nNOS	nitric oxide synthase 1, neuronal	protein-coding	-1.09673369143719	-1.0731013115114	-1.08529267491915	-1.09285102390494	-0.321127520541282	-1.07045939220346	-1.08253281747072	-1.09244324268126	2.98800045075445	0.374886936590324	1
Merged-chr5-143055758-4	chr5	143055645	143055845	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359851, intron 12 of 15)	intron (NM_001359851, intron 12 of 15)	57275.0	NM_207110	108086.0	Mm.381440	NM_080561	ENSMUSG00000045078	Rnf216	2810055G22Rik|AI647468|AU019462|C86502|F830018F18Rik|TRIAD3|UIP83|Ubce7ip1	ring finger protein 216	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-92675385-4	chr5	92675306	92675506	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177230)	promoter-TSS (NM_177230)	-135.0	NM_001360019	320696.0	Mm.209991	NM_177230	ENSMUSG00000050050	Ccdc158	4932413O14Rik	coiled-coil domain containing 158	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117287551-2	chr8	117287451	117287651	+	633.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	30532.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-110503019-3	chr12	110502926	110503126	+	870.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081457, intron 1 of 12)	intron (NM_001081457, intron 1 of 12)	17287.0	NM_012023	26931.0	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-23572465-1	chr17	23572365	23572565	+	566.0	f1_balb.idr	Intergenic	RLTR20D|LTR|ERVK	-8239.0	NM_001033496	449521.0	Mm.268582	NM_001033496	ENSMUSG00000071256	Zfp213	BC038178|D17Ertd197e	zinc finger protein 213	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-52932169-4	chr16	52932071	52932271	+	932.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-116427.0	NR_040495	73820.0	Mm.60493	NR_040495		4930404A05Rik	-	RIKEN cDNA 4930404A05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27262840-2	chr2	27262740	27262940	+	648.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_133905, exon 30 of 30)	non-coding (NR_133905, exon 30 of 30)	-15537.0	NM_138665	192166.0	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-44269142-4	chr12	44269042	44269242	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026164)	promoter-TSS (NM_026164)	-12.0	NM_026164	67452.0	Mm.54126	NM_026164	ENSMUSG00000036257	Pnpla8	1200006O19Rik|AI467579|Ipla2(gamma)	patatin-like phospholipase domain containing 8	protein-coding	6.33512703465708	7.07148643766929	6.55461341426948	6.52495887944882	6.48489111667369	6.70385638892472	6.42411620830433	6.9926331388919	0.0291070947974955	0.893194820635665	0.998431161219273
Merged-chr8-95832818-4	chr8	95832709	95832909	+	956.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20682.0	NM_172758	234595.0	Mm.29267	NM_172758	ENSMUSG00000036534	Slc38a7	D430050E18	solute carrier family 38, member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-14132444-4	chr10	14132336	14132536	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010437, exon 4 of 9)	exon (NM_010437, exon 4 of 9)	166057.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10025710-4	chr19	10025625	10025825	+	976.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153790, intron 1 of 10)	intron (NR_153790, intron 1 of 10)	7531.0	NM_001347430	74760.0	Mm.281969	NM_144538	ENSMUSG00000024663	Rab3il1	1200014K04Rik|AI115013|C76746|Rab3ail1	RAB3A interacting protein (rabin3)-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-111152689-2	chr8	111152589	111152789	+	803.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7191.0	NR_040364	434350.0	Mm.442061	NR_040363		9430091E24Rik	-	RIKEN cDNA 9430091E24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180799267-2	chr1	180799167	180799367	+	598.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	14338.0	NM_008210	15078.0	Mm.138832	NM_008210	ENSMUSG00000060743	H3f3a	EyeLinc14|H3.3A	H3 histone, family 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129743904-3	chr4	129743849	129744049	+	712.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1646.0	NR_045036	20218.0	Mm.8256	NM_011317	ENSMUSG00000028790	Khdrbs1	Sam68|p62|p68	KH domain containing, RNA binding, signal transduction associated 1	protein-coding	0.333799028712152	0.957462030174049	0.383371300744662	0.364907974617509	0.181976241816698	0.20406146601507	0.912013186839274	0.190787319885487	-0.689421245551864	0.711361665205077	1
Merged-chr11-118108286-2	chr11	118108186	118108386	+	815.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001167746, intron 17 of 80)	intron (NM_001167746, intron 17 of 80)	20933.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-26444008-1	chr4	26443908	26444108	+	606.5	f0_balb.idr	Intergenic	RMER4B|LTR|ERVK	-97356.0	NM_172865	242362.0	Mm.245602	NM_172865	ENSMUSG00000040520	Manea	4932703L02Rik	mannosidase, endo-alpha	protein-coding	0.0165652300230024	0.550267606323412	0.0294203290086443	0.0246016560576182	0.017763735007607	0.560143534828208	0.74120064228137	0.0254446422072763	1.39281956851054	0.529206950480003	1
Merged-chr11-102930768-1	chr11	102930668	102930868	+	570.0	f0_balb.idr	Intergenic	RMER19B2|LTR|ERVK	-5644.0	NM_197959	70218.0	Mm.32084	NM_197959	ENSMUSG00000051378	Kif18b	3000004C01Rik	kinesin family member 18B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-143537255-4	chr5	143537156	143537356	+	994.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9225.0	NM_001347530	19353.0	Mm.292510	NM_009007	ENSMUSG00000001847	Rac1	AL023026|D5Ertd559e	Rac family small GTPase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-69832424-4	chr8	69832260	69832460	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024954)	promoter-TSS (NM_001024954)	-264.0	NM_001357308	80720.0	Mm.210823	NM_001024954	ENSMUSG00000031860	Pbx4	2410015M21Rik|AI429113|AW045266	pre B cell leukemia homeobox 4	protein-coding	5.86888004455435	5.51804314554751	6.07344840947764	5.58148030495793	5.44848347919862	5.15162805299794	5.11567960156914	5.5562450699997	-0.503481178914237	0.0651575143492982	0.382365198868571
Merged-chr10-28520104-3	chr10	28519997	28520197	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359356, intron 13 of 30)	intron (NM_001359356, intron 13 of 30)	-148263.0	NM_001305663	210757.0	Mm.123021	NM_178666	ENSMUSG00000049109	Themis	E430004N04Rik|Gasp|Spot|Tsepa|thylex	thymocyte selection associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-144043335-4	chr3	144043250	144043450	+	821.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	158982.0	NM_001161770	16911.0	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-29362503-4	chr17	29362384	29362584	+	991.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013710, intron 1 of 15)	intron (NM_013710, intron 1 of 15)	1570.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116732759-4	chr11	116732617	116732817	+	886.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19450.0	NR_003364	193217.0	Mm.100084	NR_003364		BC018473	-	cDNA sequence BC018473	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-67266303-1	chr6	67266203	67266403	+	655.0	f0_balb.idr	promoter-TSS (NM_025814)	promoter-TSS (NM_025814)	-676.0	NM_001113566	66870.0	Mm.240490	NM_025814	ENSMUSG00000036371	Serbp1	1200009K13Rik|9330147J08Rik|AL022786|Pairbp1	serpine1 mRNA binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127290417-4	chr7	127290317	127290517	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT-int|LTR|ERVL-MaLR	-5843.0	NM_001253873	16408.0	Mm.1618	NM_008400	ENSMUSG00000030830	Itgal	(p180)|Cd11a|LFA-1|LFA-1A|Ly-15|Ly-21	integrin alpha L	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-43383811-4	chr11	43383688	43383888	+	992.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-9327.0	NR_029558	387164.0		NR_029558	ENSMUSG00000065601	Mir146	Mirn146|miR-146a|mmu-mir-146	microRNA 146	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46599044-2	chr8	46598944	46599144	+	558.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001184, intron 6 of 14)	intron (NM_001001184, intron 6 of 14)	18183.0	NM_001001184	408022.0	Mm.217385	NM_001001184	ENSMUSG00000038225	Primpol	BC065112|Ccdc111	primase and polymerase (DNA-directed)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-101719657-6	chr13	101719550	101719750	+	981.048584	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077495, intron 2 of 15)	intron (NM_001077495, intron 2 of 15)	-27020.0	NM_001024955	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-73593574-4	chr12	73593472	73593672	+	907.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008856, intron 1 of 13)	intron (NM_008856, intron 1 of 13)	8776.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-90264378-2	chr9	90264278	90264478	+	555.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 1 of 12)	intron (NM_194334, intron 1 of 12)	6391.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55869658-2	chr19	55869558	55869758	+	562.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_138565, intron 4 of 15)	intron (NR_138565, intron 4 of 15)	-25663.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-102993134-3	chr11	102992979	102993179	+	694.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_026551)	TTS (NM_026551)	6842.0	NR_105896	102466988.0		NR_105896	ENSMUSG00000098613	Mir6931	Gm27303|mmu-mir-6931	microRNA 6931	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-53926495-4	chr11	53926392	53926592	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34789.0	NM_011396	20520.0	Mm.42253	NM_011396	ENSMUSG00000018900	Slc22a5	Lstpl|Octn2|jvs	solute carrier family 22 (organic cation transporter), member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-137900450-3	chr1	137900344	137900544	+	884.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66011.0	NR_029795	735252.0		NR_029795	ENSMUSG00000065565	Mir181a-1	Mirn181a-1|Mirn213|miR-213|mir-181a-1|mmu-mir-213	microRNA 181a-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-87301772-4	chr17	87301654	87301854	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028639, intron 3 of 19)	L1MB2|LINE|L1	18868.0	NM_028639	225049.0	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-127154647-2	chr6	127154547	127154747	+	721.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_040275, intron 1 of 1)	intron (NR_040275, intron 1 of 1)	-3599.0	NM_009829	12444.0	Mm.333406	NM_009829	ENSMUSG00000000184	Ccnd2	2600016F06Rik|AI256817|BF642806|C86853|Vin-1|Vin1|cD2	cyclin D2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-94193817-2	chr8	94193717	94193917	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14728.0	NM_013602	17748.0	Mm.192991	NM_013602	ENSMUSG00000031765	Mt1	MT-I|Mt-1	metallothionein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-16168501-2	chr19	16168401	16168601	+	709.75	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033228, exon 1 of 1)	non-coding (NR_033228, exon 1 of 1)	4403.0	NR_033228	595139.0	Mm.405662	NR_033228		E030024N20Rik	9030417F11Rik|Ppia-ps8	peptidylprolyl isomerase A pseudogene 8	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-132753111-4	chr3	132752997	132753197	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163455, intron 22 of 25)	intron (NM_001163455, intron 22 of 25)	68953.0	NM_001163455	271981.0	Mm.257864	NM_173032	ENSMUSG00000028030	Tbck	1700120J03Rik|9430001M19|A630047E20Rik|C030007I09Rik|Tbckl	TBC1 domain containing kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-136658160-4	chr6	136658087	136658287	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025806, intron 1 of 10)	intron (NM_025806, intron 1 of 10)	3706.0	NM_025806	66857.0	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	4.98358185687779	4.57723489639927	5.10503147178	4.59161403461207	3.9738596969246	4.44109083324673	4.17665761943785	2.57484645784058	-1.14462171994343	0.0115306319243185	0.120299584198237
Merged-chr4-62312839-2	chr4	62312739	62312939	+	615.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355385, intron 20 of 27)	intron (NM_001355385, intron 20 of 27)	21292.0	NM_001290518	20530.0	Mm.292539	NM_025286	ENSMUSG00000066152	Slc31a2	AI604396|CTR2	solute carrier family 31, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-128479945-4	chr6	128479859	128480059	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028593, intron 2 of 4)	intron (NR_028593, intron 2 of 4)	41202.0	NR_028593	791299.0	Mm.297516	NR_028592	ENSMUSG00000059659	Gm10069	-	predicted gene 10069	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-41525475-4	chr13	41525374	41525574	+	917.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38114.0	NM_001111324	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-45752866-4	chr17	45752787	45752987	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152153, intron 2 of 4)	intron (NR_152153, intron 2 of 4)	18381.0	NR_152153	433111.0	Mm.213441	NR_152153	ENSMUSG00000097727	F630040K05Rik	-	RIKEN cDNA F630040K05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91374309-3	chr16	91374163	91374363	+	828.3809809999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347258, intron 1 of 7)	intron (NM_001347258, intron 1 of 7)	1480.0	NM_001110498	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98798078-2	chr11	98797978	98798178	+	544.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361934)	promoter-TSS (NM_001361934)	-576.0	NM_001361933	74026.0	Mm.258352	NM_028722	ENSMUSG00000052915	Msl1	2810017F12Rik|4121402D02Rik|4930463F05Rik|AA682082|Msl-1	male specific lethal 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-136520444-2	chr6	136520343	136520543	+	641.375	f0_c57.idr|f1_balb.idr	intron (NM_019426, intron 1 of 14)	intron (NM_019426, intron 1 of 14)	1592.0	NM_019426	54343.0	Mm.173271	NM_019426	ENSMUSG00000030213	Atf7ip	2610204M12Rik|AM|Mcaf1	activating transcription factor 7 interacting protein	protein-coding	-0.925187291161242	-0.911808487740209	-0.749981157398261	-0.921886055514278	-0.464261639921597	-0.909268476416488	-0.919314369589395	-0.76200462169366	1.84679056399149	0.524881242422757	1
Merged-chr11-6393024-1	chr11	6392924	6393124	+	559.0	f0_balb.idr	Intergenic	L1MD1|LINE|L1	-2101.0	NM_001005867	52915.0	Mm.1144	NM_028601	ENSMUSG00000041164	Zmiz2	Zimp7	zinc finger, MIZ-type containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-32884393-2	chr15	32884293	32884493	+	672.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36330.0	NM_008304	15529.0	Mm.234266	NM_008304	ENSMUSG00000022261	Sdc2	4833414L08Rik|AA960457|Hspg1|Synd2|syndecan-2	syndecan 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-84968219-2	chr16	84968119	84968319	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001198825, intron 13 of 15)	intron (NM_001198825, intron 13 of 15)	-3992.0	NR_045889	100038614.0	Mm.441351	NR_045889	ENSMUSG00000115518	Gm10791	-	predicted gene 10791	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36082425-4	chr1	36082327	36082527	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015818, intron 1 of 1)	intron (NM_015818, intron 1 of 1)	14027.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-148889154-4	chr2	148889056	148889256	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13644.0	NM_009976	13010.0	Mm.4263	NM_009976	ENSMUSG00000027447	Cst3	CysC	cystatin C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-7063174-4	chr10	7063059	7063259	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39974.0	NM_001033391	320495.0	Mm.331674	NM_001033391	ENSMUSG00000064065	Ipcef1	A130090K04Rik	interaction protein for cytohesin exchange factors 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98457279-2	chr11	98457179	98457379	+	559.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10445.0	NM_010346	14786.0	Mm.276702	NM_010346	ENSMUSG00000019312	Grb7	mKIAA4028	growth factor receptor bound protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-88231546-2	chr1	88231446	88231646	+	709.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001281466, intron 5 of 41)	L2c|LINE|L2	4526.0	NM_001281466	100040766.0	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	Heatr7b1	maestro heat-like repeat family member 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-73621091-2	chr7	73620991	73621191	+	815.599976	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR19A2|LTR|ERVK	-62696.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-36867775-4	chr8	36867642	36867842	+	675.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001194940, intron 2 of 17)	intron (NM_001194940, intron 2 of 17)	84700.0	NM_001194940	50768.0	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	2.20474331616638	2.61772312250463	2.65477887007316	3.04631695555688	2.07666267884842	2.98985407933106	3.2314534352852	2.89671754974003	0.380738945633682	0.604110038549488	0.973799253481432
Merged-chr12-100085241-2	chr12	100085141	100085341	+	626.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MD3|LINE|L1	-27090.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-59169998-3	chr11	59169907	59170107	+	940.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6262.0	NM_173785	216792.0	Mm.266175	NM_173785	ENSMUSG00000049287	Iba57	4930543L23Rik|A230051G13Rik|C1orf69	IBA57 homolog, iron-sulfur cluster assembly	protein-coding	1.7777001331931	2.12546511303229	1.55851534395759	2.00102401011822	2.136115221842	2.14067510561412	2.59339668616383	2.34075728802242	1.14563722499941	0.202802067348436	0.688906909412948
Merged-chr10-80576158-2	chr10	80576058	80576258	+	721.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_078477, intron 1 of 1)	intron (NM_078477, intron 1 of 1)	1138.0	NM_078477	118445.0	Mm.41513	NM_078477	ENSMUSG00000035397	Klf16	AI843742|BTEB4|DRRF	Kruppel-like factor 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-51924464-2	chr15	51924364	51924564	+	576.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47023.0	NM_030132	78581.0	Mm.176347	NM_030132	ENSMUSG00000022313	Utp23	1700010I21Rik|AI662478|BB238373|D530033C11Rik	UTP23 small subunit processome component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-19309898-2	chr3	19309798	19309998	+	646.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001122759, intron 1 of 12)	intron (NM_001122759, intron 1 of 12)	1424.0	NM_001122759	18583.0	Mm.355614	NM_008802	ENSMUSG00000069094	Pde7a	AU015378|AW047537	phosphodiesterase 7A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-154112653-1	chr1	154112553	154112753	+	797.333313	f0_balb.idr	Intergenic	MIR|SINE|MIR	-88534.0	NM_001204908	100503355.0	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	Gm10178|Gm203	zinc finger protein 648	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-108613306-4	chr12	108613215	108613415	+	993.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163395, intron 1 of 12)	intron (NM_001163395, intron 1 of 12)	7549.0	NM_001163395	14026.0	Mm.238841	NM_007965	ENSMUSG00000021262	Evl	AI528774|b2b2600Clo	Ena-vasodilator stimulated phosphoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-19240151-2	chr10	19240051	19240251	+	712.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	72913.0	NR_038022	100504265.0	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	-0.226235296896101	0.595109062818019	-0.213198233288771	-0.218068504042706	-0.225013795898844	0.608384863201147	-0.211812549537951	-0.217215065379025	0.0395006580732415	0.987233647591244	1
Merged-chr3-126673257-3	chr3	126673159	126673359	+	740.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025438, intron 2 of 18)	MTA_Mm|LTR|ERVL-MaLR	76308.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	3.11052552697711	3.19178745496736	2.46586183201913	3.44556237550227	2.51351253947554	2.57488729506575	1.7537241801568	1.69985165365103	-1.77200960619042	0.0229264768666152	0.197042886422384
Merged-chr2-38997494-2	chr2	38997394	38997594	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029687)	promoter-TSS (NM_029687)	-815.0	NM_029687	76646.0	Mm.358777	NM_029687	ENSMUSG00000035295	Wdr38	1700123D08Rik	WD repeat domain 38	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-60708355-3	chr13	60708251	60708451	+	864.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 3 of 26)	RMER15|LTR|ERVL	78013.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-120405604-4	chr4	120405546	120405746	+	980.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013883, intron 1 of 16)	CpG	365.0	NM_013883	29871.0	Mm.427014	NM_013883	ENSMUSG00000000085	Scmh1	AI315320|AI851618|Scml1|Scml3	sex comb on midleg homolog 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-121393616-2	chr5	121393516	121393716	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4366.0	NM_172722	231713.0	Mm.33919	NM_172722	ENSMUSG00000042719	Naa25	4833422K13Rik|A630046C11|AI450868|C330023M02Rik|Mdm20	N(alpha)-acetyltransferase 25, NatB auxiliary subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-108157977-4	chr10	108157860	108158060	+	954.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MamGypLTR1a|LTR|Gypsy	-4440.0	NM_027892	17931.0	Mm.422959	NM_027892	ENSMUSG00000019907	Ppp1r12a	1200015F06Rik|5730577I22Rik|AA792106|AV099298|D10Ertd625e|Mypt1	protein phosphatase 1, regulatory (inhibitor) subunit 12A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-89386729-2	chr13	89386629	89386829	+	577.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-153907.0	NM_013500	12950.0	Mm.266790	NM_013500	ENSMUSG00000021613	Hapln1	BB099155|CLP|Crtl1|Crtl1l|LP|LP-1	hyaluronan and proteoglycan link protein 1	protein-coding	-0.0521072833514407	-0.0304841840655669	-0.0374957535512761	0.555040593336844	-0.0507376720311353	-0.0289129267387688	0.997427971799726	0.148335229062837	1.32443112800813	0.546554602726591	1
Merged-chr7-126244323-2	chr7	126244223	126244423	+	680.166687	f1_balb.idr|f1_c57bl6.idr	intron (NR_131046, intron 1 of 4)	MTEb|LTR|ERVL-MaLR	3915.0	NR_131046	76728.0	Mm.76920	NR_131046	ENSMUSG00000108676	1700123J17Rik	Gm44875	RIKEN cDNA 1700123J17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-57372574-4	chr14	57372469	57372669	+	789.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030004, intron 2 of 7)	intron (NM_030004, intron 2 of 7)	25914.0	NM_030004	68631.0	Mm.25539	NM_030004	ENSMUSG00000021947	Cryl1	1110025H08Rik|A230106J09Rik|C85932|gul3dh	crystallin, lambda 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-100776201-4	chr12	100776089	100776289	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2868.0	NM_001361023	217830.0	Mm.218590	NM_145448	ENSMUSG00000021185	Dglucy	9030617O03Rik	D-glutamate cyclase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43630336-3	chr4	43630244	43630444	+	917.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1591.0	NM_001355466	230103.0	Mm.103477	NM_173788	ENSMUSG00000028469	Npr2	GC-B|GC-B2|GC-B3|cn|mNPR-B|pwe	natriuretic peptide receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-101902288-4	chr1	101902196	101902396	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	746528.0	NR_037989	100504525.0	Mm.87065	NR_037989	ENSMUSG00000100684	Gm20268	-	predicted gene, 20268	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191119519-4	chr1	191119396	191119596	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	21082.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	4.75417830335682	4.51126257825908	4.6946423903073	4.51659867601446	5.45965231024343	6.0986584815511	5.99806224535217	6.03415660152997	1.48532144901244	4.64433662457467e-07	3.4255789439537e-05
Merged-chr14-62347358-4	chr14	62347260	62347460	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026001, intron 2 of 10)	intron (NM_026001, intron 2 of 10)	15292.0	NM_026001	67153.0	Mm.26040	NM_026001	ENSMUSG00000021932	Rnaseh2b	1110019N06Rik|2610207P08Rik|Dleu8	ribonuclease H2, subunit B	protein-coding	2.31545274823033	1.90373490196599	2.59970417965731	2.33600582275377	2.50267290478121	2.38125453704572	1.66037714585771	2.34766025100489	-0.112094636402857	0.896162486538691	0.998431161219273
Merged-chr11-21024700-4	chr11	21024599	21024799	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66625.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-15636694-1	chr16	15636594	15636794	+	857.0	f0_c57.idr	exon (NM_008565, exon 2 of 16)	exon (NM_008565, exon 2 of 16)	706.0	NM_008565	17217.0	Mm.1500	NM_008565	ENSMUSG00000022673	Mcm4	19G|AI325074|AU045576|Cdc21|Mcmd4|mKIAA4003|mcdc21	minichromosome maintenance complex component 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-145105645-4	chr3	145105553	145105753	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6547.0	NM_178697	229933.0	Mm.331420	NM_178697	ENSMUSG00000036960	Clca2	4732440A06|AI586120|Clca5	chloride channel accessory 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-181485736-1	chr2	181485636	181485836	+	566.0	f1_c57bl6.idr	Intergenic	Intergenic	-7470.0	NM_183181	241850.0	Mm.87455	NM_183181	ENSMUSG00000055882	Abhd16b	1700095H12	abhydrolase domain containing 16B	protein-coding	-0.445723071688749	-0.710026324588651	-0.713568545316525	0.0196189857887833	-0.720167606610576	-0.709228091018644	-0.712787141249951	-0.715824871459513	-3.29760827211211	0.245666276545393	1
Merged-chr4-134001970-2	chr4	134001880	134002080	+	744.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1116.0	NM_026144	67422.0	Mm.100290	NM_026144	ENSMUSG00000012117	Dhdds	3222401G21Rik|CIT|DS|HDS|W91638	dehydrodolichyl diphosphate synthase	protein-coding	1.13810860334111	2.25855502652603	1.41531788723467	0.782633305564035	0.758888702387299	2.00628782943323	0.803397098832084	1.51773736123876	-0.425519048906823	0.758699568833317	0.998431161219273
Merged-chr2-166660221-2	chr2	166660121	166660321	+	643.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	53611.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-45448826-3	chr5	45448747	45448947	+	662.211121	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024236, intron 1 of 6)	MTD|LTR|ERVL-MaLR	1382.0	NM_024236	110391.0	Mm.30204	NM_024236	ENSMUSG00000015806	Qdpr	2610008L04Rik|D5Ertd371e|Dhpr|PKU2	quinoid dihydropteridine reductase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-118128200-4	chr6	118128107	118128307	+	991.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362149, intron 2 of 7)	intron (NM_001362149, intron 2 of 7)	10623.0	NM_001362149	78752.0	Mm.300317	NM_030165	ENSMUSG00000042042	Csgalnact2	4632415D10Rik|Galnact2	chondroitin sulfate N-acetylgalactosaminyltransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-65486375-3	chr7	65486262	65486462	+	942.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-95669.0	NR_131060	407810.0	Mm.249337	NR_131060	ENSMUSG00000086662	BC046251	-	cDNA sequence BC046251	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-36266066-4	chr17	36265953	36266153	+	918.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357889, intron 3 of 4)	ORR1E|LTR|ERVL-MaLR	5378.0	NM_001357889	79263.0	Mm.40624	NM_024468	ENSMUSG00000045409	Trim39	1100001D15Rik|E130103K13Rik|RBCC-B30.2|Rnf23|mKIAA4179|tfp	tripartite motif-containing 39	protein-coding	0.774285833109999	0.639441885836906	1.67724947967886	1.2379290520726	0.780144985303901	0.871362261881884	0.629909423527175	1.45452036633491	-0.718392180415668	0.629070434159399	0.981055511574238
Merged-chr15-73726172-4	chr15	73726013	73726213	+	980.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166388, intron 1 of 5)	intron (NM_001166388, intron 1 of 5)	1183.0	NM_001166388	19245.0	Mm.390807	NM_008975	ENSMUSG00000059895	Ptp4a3	AV088979|Prl-3|pPtp4a3	protein tyrosine phosphatase 4a3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-121142449-2	chr6	121142349	121142549	+	546.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11427.0	NM_001270475	194401.0	Mm.122399	NM_153396	ENSMUSG00000051586	Mical3	C130040D16Rik|Mical-3|mKIAA1364	microtubule associated monooxygenase, calponin and LIM domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-44248304-4	chr19	44248202	44248402	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	45014.0	NM_024450	30049.0	Mm.480594	NM_024450	ENSMUSG00000025202	Scd3	4930513N16Rik	stearoyl-coenzyme A desaturase 3	protein-coding	5.12078161919912	5.40335013919854	6.01774375679768	5.86273892594958	5.48768310725532	5.7778024941113	6.23934885836053	5.69418236403274	0.20224235805796	0.482205977860608	0.930046188356806
Merged-chr7-28741874-4	chr7	28741844	28742044	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023637)	promoter-TSS (NM_023637)	-24.0	NM_023637	71984.0	Mm.333725	NM_023637	ENSMUSG00000070699	Sars2	2410015F05Rik|D7Ertd353e|SerRS|SerRSmt	seryl-aminoacyl-tRNA synthetase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135244519-2	chr4	135244419	135244619	+	961.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013885, intron 1 of 5)	intron (NM_013885, intron 1 of 5)	28241.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-120390525-2	chr14	120390425	120390625	+	628.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360379, intron 5 of 6)	intron (NM_001360379, intron 5 of 6)	84073.0	NM_001360376	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107629274-4	chr9	107629181	107629381	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008138, intron 1 of 8)	CT-rich|Low_complexity|Low_complexity	6061.0	NM_008138	14678.0	Mm.196464	NM_008138	ENSMUSG00000032562	Gnai2	C76432|Galphai2|Gia|Gnai-2	guanine nucleotide binding protein (G protein), alpha inhibiting 2	protein-coding	3.65461152123894	3.95083674384874	3.06090396489195	4.04872166547333	3.29391633115476	3.68900332043675	2.2962383595852	3.53702405460524	-0.652979609956873	0.263169587166192	0.764706432349876
Merged-chr13-95948716-1	chr13	95948616	95948816	+	844.0	f1_balb.idr	Intergenic	Intergenic	-56794.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	2.14739595490682	2.05852737662001	1.48572847126719	2.05626237766943	2.40559402529275	2.43278543112882	2.00504671981174	1.23087660192145	0.375103377620014	0.709831902359838	0.998431161219273
Merged-chr16-20517596-2	chr16	20517496	20517696	+	645.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_007889, intron 1 of 14)	intron (NM_007889, intron 1 of 14)	610.0	NM_007889	13544.0	Mm.247259	NM_007889	ENSMUSG00000003233	Dvl3	b2b2866Clo	dishevelled segment polarity protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-8037984-3	chr15	8037896	8038096	+	878.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081402, intron 7 of 17)	intron (NM_001081402, intron 7 of 17)	61213.0	NM_001358788	545085.0	Mm.321312	NM_001081402	ENSMUSG00000039828	Wdr70	4833422F06Rik	WD repeat domain 70	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-98678535-2	chr15	98678435	98678635	+	623.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TTTTA)n|Simple_repeat|Simple_repeat	-1074.0	NM_172612	223881.0	Mm.274010	NM_172612	ENSMUSG00000054855	Rnd1	A830014L09Rik|Arhs	Rho family GTPase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-31756272-3	chr19	31756198	31756398	+	697.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013833, intron 1 of 17)	intron (NM_001013833, intron 1 of 17)	8735.0	NM_001013833	19091.0	Mm.381170	NM_011160	ENSMUSG00000052920	Prkg1	AW125416|CGKI|Gm19690|Prkg1b|Prkgr1b	protein kinase, cGMP-dependent, type I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91945294-2	chr2	91945194	91945394	+	717.033325	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_105965)	promoter-TSS (NR_105965)	-364.0	NR_105965	102465604.0		NR_105965	ENSMUSG00000098651	Mir6999	Gm27673|mmu-mir-6999	microRNA 6999	ncRNA	0.0444297703509469	-0.478083249940031	-0.481549835625047	-0.484213622238279	-0.349666757209623	-0.477299664371339	-0.480786607516717	-0.0736645186935334	-0.108187627022105	0.967054586154776	1
Merged-chr1-136569404-4	chr1	136569315	136569515	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55486.0	NM_177643	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52156040-4	chr13	52155952	52156152	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	59311.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-86652113-2	chr4	86652006	86652206	+	612.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER91B|DNA|hAT-Tip100	17953.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	-0.347690541430383	0.422017490645869	-0.337671782054856	-0.341430103043912	0.253290915926982	-0.33172155434454	-0.33659911527416	-0.340772849234701	-0.489577782254237	0.851863948761128	1
Merged-chr10-98897277-2	chr10	98897177	98897377	+	890.125	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17365.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-54742590-3	chr14	54742480	54742680	+	968.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016972, intron 3 of 10)	intron (NM_016972, intron 3 of 10)	-30406.0	NM_207131	110794.0	Mm.236223	NM_207131	ENSMUSG00000052435	Cebpe	C/EBPe|C/EBPepsilon|CRP1|Gm294	CCAAT/enhancer binding protein (C/EBP), epsilon	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97661629-6	chr11	97661553	97661753	+	940.255554	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1759.0	NM_139311	246198.0	Mm.23685	NM_139311	ENSMUSG00000038437	Mllt6	AI315037|Af17	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 6	protein-coding	1.7488503228367	1.81381522651953	2.12684076948777	1.15759875128868	1.63789051212023	1.65580710701032	2.33645465877896	2.1733509576571	0.649493403309051	0.533684515345615	0.952266905421651
Merged-chr10-124706645-1	chr10	124706545	124706745	+	593.0	f1_c57bl6.idr	Intergenic	Intergenic	237571.0	NR_028310	75030.0	Mm.159403	NR_028310	ENSMUSG00000112364	4930503E24Rik	-	eukaryotic translation initiation factor 3, subunit I pseudogene	pseudo	-0.497094144635314	-0.76267567825754	-0.766116113414939	-0.768771818589279	-0.772526490571898	-0.761900434449286	-0.0631856442362332	-0.768307794503111	1.56792930719053	0.596818330308592	1
Merged-chr12-85701037-4	chr12	85700901	85701101	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016767, intron 2 of 2)	intron (NM_016767, intron 2 of 2)	14281.0	NM_016767	53314.0	Mm.6672	NM_016767	ENSMUSG00000034266	Batf	B-ATF|SFA-2	basic leucine zipper transcription factor, ATF-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-83653958-6	chr7	83653841	83654041	+	985.361084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360088, intron 13 of 18)	intron (NM_001360088, intron 13 of 18)	1554.0	NM_001360089	16170.0	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-9834126-2	chr17	9834026	9834226	+	727.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR11A|LTR|ERVK	-58260.0	NR_045433	71092.0	Mm.243827	NR_045433		4930452A19Rik	4933424P20Rik	RIKEN cDNA 4930452A19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-44431691-2	chr10	44431591	44431791	+	737.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27057.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-24151536-4	chr16	24151427	24151627	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68837.0	NR_155457	108168278.0	Mm.417246	NR_155457		Gm46545	-	predicted gene, 46545	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-77752718-4	chr15	77752615	77752815	+	829.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357895, intron 3 of 3)	intron (NM_001357895, intron 3 of 3)	2558.0	NM_001357896	239552.0	Mm.125650	NM_001081970	ENSMUSG00000056656	Apol8	9830006J20Rik|APOL-II|Apol2	apolipoprotein L 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-107275045-3	chr7	107274958	107275158	+	726.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID2|SINE|ID	65613.0	NM_029660	76572.0	Mm.128134	NM_029660	ENSMUSG00000073894	Rbmxl2	1700012H05Rik|Hnrnpg-t	RNA binding motif protein, X-linked-like 2	protein-coding	0.780174208027713	0.294776596557924	0.289794906841101	0.667330760420554	0.408050985193735	0.852354129830184	0.290889337231815	0.432927818134918	-0.0848528469351051	0.963258441727049	1
Merged-chr11-74837798-4	chr11	74837616	74837816	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010813, exon 4 of 6)	exon (NM_010813, exon 4 of 6)	6792.0	NM_010813	17428.0	Mm.3759	NM_010813	ENSMUSG00000000282	Mnt	Rox|bHLHd3	max binding protein	protein-coding	3.29190596310356	3.60717212093714	3.64696304812892	4.44573981003902	3.65387107577142	3.54272427657453	2.85142528380126	3.12307899372852	-0.737436923114511	0.186330898689337	0.663251025259495
Merged-chr2-30708417-3	chr2	30708333	30708533	+	847.966675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12777.0	NR_037272	100526499.0		NR_037272	ENSMUSG00000093091	Mir3089	mir-3089|mmu-mir-3089	microRNA 3089	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-16573365-4	chr16	16573265	16573465	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301817, intron 1 of 16)	intron (NM_001301817, intron 1 of 16)	-13146.0	NM_139232	224014.0	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167932289-4	chr2	167932209	167932409	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011201)	promoter-TSS (NM_011201)	-18.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28954979-1	chr7	28954879	28955079	+	599.0	f0_balb.idr	intron (NM_021895, intron 1 of 20)	intron (NM_021895, intron 1 of 20)	7353.0	NM_001360549	60595.0	Mm.81144	NM_021895	ENSMUSG00000054808	Actn4	C77391	actinin alpha 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-40900176-4	chr13	40900078	40900278	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008105, intron 1 of 2)	intron (NM_008105, intron 1 of 2)	13420.0	NM_008105	14538.0	Mm.314757	NM_008105	ENSMUSG00000021360	Gcnt2	5330430K10Rik|IGnT|IGnTA|IGnTB|IGnTC	glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-95945179-2	chr16	95945079	95945279	+	831.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-16102.0	NR_040484	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171501634-3	chr1	171501543	171501743	+	865.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1835.0	NM_019484	56009.0	Mm.389208	NM_019484	ENSMUSG00000060244	Alyref2	C130042O11Rik|REF2|Refbp2	Aly/REF export factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-125337033-3	chr8	125336932	125337132	+	945.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	155801.0	NM_001081337	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	2.50423902403709	2.8237680987106	2.26548803502788	1.95081349511099	1.14450077460668	2.36776777471686	1.21507698221428	1.81223516335263	-1.69594204386898	0.0993315223215726	0.490158564608197
Merged-chr5-88644237-2	chr5	88644137	88644337	+	655.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359209, intron 14 of 17)	intron (NM_001359209, intron 14 of 17)	31343.0	NM_001098476	231413.0	Mm.332474	NM_178700	ENSMUSG00000044221	Grsf1	BB232551|C80280|D5Wsu31e	G-rich RNA sequence binding factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70983005-4	chr11	70982901	70983101	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007573)	promoter-TSS (NM_007573)	25.0	NM_007573	12261.0	Mm.30049	NM_007573	ENSMUSG00000018446	C1qbp	AA407365|AA986492|D11Wsu182e|HABP1|P32|gC1qBP	complement component 1, q subcomponent binding protein	protein-coding	4.79568374202574	5.40564774911471	4.51047385770875	5.3526571249823	5.07573327453978	4.99030328434532	4.54441952458513	5.34897983088162	-0.0470724030443052	0.891586324872565	0.998431161219273
Merged-chr6-53045690-4	chr6	53045576	53045776	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173406, intron 1 of 4)	intron (NM_173406, intron 1 of 4)	22948.0	NM_173406	231986.0	Mm.386865	NM_173406	ENSMUSG00000063568	Jazf1	AI591476|C820002C15|Jaz1|Tip27	JAZF zinc finger 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70058089-2	chr14	70057989	70058189	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028560, intron 6 of 6)	intron (NM_028560, intron 6 of 6)	-19356.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-35064486-4	chr7	35064393	35064593	+	993.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-7927.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-78535512-4	chr11	78535422	78535622	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018854)	promoter-TSS (NM_018854)	738.0	NM_001159392	21927.0	Mm.386774	NM_009395	ENSMUSG00000017615	Tnfaip1	Bacurd2|Edp-1|Edp1|Tnfip1	tumor necrosis factor, alpha-induced protein 1 (endothelial)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-165587291-2	chr1	165587191	165587391	+	904.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	47250.0	NM_001001880	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-36042212-2	chr17	36042078	36042278	+	620.375	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001034909)	promoter-TSS (NM_001034909)	514.0	NM_010399	15051.0	Mm.195061	NM_010399		H2-T9	H-2T9	histocompatibility 2, T region locus 9	protein-coding	2.39665470167011	3.83888905997969	3.84125853792759	2.93715165262345	3.33070442884343	3.79643421057332	3.26363967170715	3.25470388431438	0.0666268896072734	0.913158254927471	0.998431161219273
Merged-chr7-122821388-4	chr7	122821279	122821479	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	149080.0	NR_045614	73951.0	Mm.389936	NR_045614		4930413G21Rik	-	RIKEN cDNA 4930413G21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-22389288-4	chr9	22389202	22389402	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028390)	promoter-TSS (NM_028390)	-96.0	NM_028390	68743.0	Mm.282751	NM_028390	ENSMUSG00000036777	Anln	1110037A17Rik|2900037I21Rik|C78101|Scraps	anillin, actin binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-49171501-2	chr14	49171401	49171601	+	723.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027492)	promoter-TSS (NM_027492)	-745.0	NM_027492	70646.0	Mm.275688	NM_027492	ENSMUSG00000036282	Naa30	4930487N19Rik|5730533P17Rik|AI447922|AW322455|Nat12	N(alpha)-acetyltransferase 30, NatC catalytic subunit	protein-coding	-2.18292257394068	-2.15545247547656	-2.03304972317742	-2.17058342868585	-2.18099422382073	-2.1536522739386	-2.16187909550322	-2.16936197735154	-0.683654500252594	0.846597994014493	1
Merged-chr7-30613670-3	chr7	30613535	30613735	+	935.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026815)	promoter-TSS (NM_026815)	-901.0	NM_026815	109637.0	Mm.25471	NM_026815	ENSMUSG00000006313	Upk1a	1110031P12Rik|AU019298|C87192|Tspan21|Upk1	uroplakin 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70563880-3	chr11	70563768	70563968	+	983.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016713, intron 1 of 30)	intron (NM_016713, intron 1 of 30)	987.0	NM_016713	50932.0	Mm.42967	NM_016713	ENSMUSG00000020827	Mink1	B55|MINK|Map4k6|Ysk2	misshapen-like kinase 1 (zebrafish)	protein-coding	1.52791818814445	0.808183016382476	0.79372718812037	1.29045592732182	1.54280783501034	1.23477787280782	0.796940225425189	1.88828475436115	1.04274182089275	0.463712823647093	0.922064436622467
Merged-chr9-23877048-2	chr9	23876948	23877148	+	548.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-220970.0	NM_175678	319239.0	Mm.130824	NM_175678	ENSMUSG00000043659	Npsr1	9330128H10Rik|GPRA|Gpr154|MVTR|PGR14|VRR1	neuropeptide S receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-84702926-4	chr16	84702830	84703030	+	924.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10093.0	NR_132106	100653389.0	Mm.261808	NR_132106	ENSMUSG00000097418	Mir155hg	Bic|Gm26667	Mir155 host gene (non-protein coding)	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128863963-3	chr2	128863836	128864036	+	708.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024237)	promoter-TSS (NM_024237)	4.0	NM_024237	70370.0	Mm.5107	NM_024237	ENSMUSG00000027386	Fbln7	1600015H20Rik|AI464334|TM14	fibulin 7	protein-coding	1.69250871648824	1.22233762909462	2.7830236431638	1.61540738576957	1.35673796169935	2.6631674932946	2.14774542454451	2.39763138944507	0.551569200494302	0.595066476436767	0.971032388302052
Merged-chr7-29766084-2	chr7	29765984	29766184	+	569.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13B|LTR|ERVK	-2468.0	NM_023750	74352.0	Mm.251083	NM_023750	ENSMUSG00000046185	Zfp84	2210410P13Rik|4633401C23Rik|AI415447|BB081605|C86188|KRAB18|Zfp69	zinc finger protein 84	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69579377-4	chr11	69579279	69579479	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144824)	promoter-TSS (NM_144824)	-55.0	NM_144824	216853.0	Mm.31586	NM_144824	ENSMUSG00000041346	Wrap53	BC021790|Wdr79	WD repeat containing, antisense to Trp53	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-134674540-1	chr1	134674440	134674640	+	577.0	f1_balb.idr	intron (NM_009307, intron 2 of 9)	intron (NM_009307, intron 2 of 9)	27928.0	NM_009307	20980.0	Mm.5102	NM_009307	ENSMUSG00000026452	Syt2	IP4BP|R74640|mKIAA4194|sytII	synaptotagmin II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-40582246-2	chr12	40582146	40582346	+	752.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	136193.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34420175-3	chr17	34420077	34420277	+	843.5833130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001177, intron 5 of 19)	intron (NM_001001177, intron 5 of 19)	21357.0	NM_001163855	407788.0	Mm.73205	NM_001001177	ENSMUSG00000057246	BC051142	NG8|TSBP|Tesb|Tesbp	cDNA sequence BC051142	protein-coding	1.10256791996869	1.39227190588073	0.597354381037653	1.37641527667418	0.742392112499419	1.15815518957236	0.599669489381925	0.590642280972596	-1.77868558696547	0.262116678252674	0.76344292903599
Merged-chr11-106659967-2	chr11	106659867	106660067	+	676.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001032378, intron 13 of 13)	intron (NM_001032378, intron 13 of 13)	-47037.0	NM_198292	21763.0	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-165617903-2	chr1	165617803	165618003	+	907.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083897, intron 1 of 5)	intron (NM_001083897, intron 1 of 5)	16638.0	NM_001001880	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133570185-3	chr4	133570125	133570325	+	857.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER92B|LTR|ERV1	-4520.0	NM_172876	242691.0	Mm.40110	NM_172876	ENSMUSG00000028850	Gpatch3	D930035B09Rik|Gpatc3	G patch domain containing 3	protein-coding	1.80841867548847	1.13657722792923	1.09806355061849	1.76002608059733	2.47036542854397	2.08586010340086	1.83599014152017	3.57774849230772	2.77215880734087	0.00732789963082903	0.0873378871894239
Merged-chr6-115066097-2	chr6	115065997	115066197	+	906.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28223.0	NM_026894	68971.0	Mm.24937	NM_026894	ENSMUSG00000030316	Tamm41	1500001M20Rik|TAM41	TAM41 mitochondrial translocator assembly and maintenance homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-69696332-2	chr3	69696232	69696432	+	586.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	MMVL30-int|LTR|ERV1	-25723.0	NM_133787	97112.0	Mm.21062	NM_133787	ENSMUSG00000027787	Nmd3	C87860	NMD3 ribosome export adaptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150030789-4	chr4	150030604	150030804	+	964.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21681.0	NM_173371	100198.0	Mm.22183	NM_173371	ENSMUSG00000028980	H6pd	AI785303|G6pd1|Gpd-1|Gpd1	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-60974958-4	chr1	60974862	60975062	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2952.0	NM_017480	54167.0	Mm.42044	NM_017480	ENSMUSG00000026009	Icos	AILIM|CCLP|CRP-1|H4|Ly115	inducible T cell co-stimulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-59343773-2	chr3	59343673	59343873	+	576.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001162884, exon 1 of 7)	5' UTR (NM_001162884, exon 1 of 7)	483.0	NM_001162884	242050.0	Mm.228086	NM_001162884	ENSMUSG00000036334	Igsf10	6530405F15Rik|9030224D03|AA409708|AA536958|AI414626|Adlican2|CMF608	immunoglobulin superfamily, member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-44776334-3	chr10	44776195	44776395	+	698.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-290919.0	NM_011156	19072.0	Mm.10281	NM_011156	ENSMUSG00000019849	Prep	AI047692|AI450383|D10Wsu136e|PEP|Pop	prolyl endopeptidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-36830125-4	chr5	36830007	36830207	+	911.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008550, intron 1 of 18)	intron (NM_008550, intron 1 of 18)	542.0	NM_008550	17160.0	Mm.761	NM_008550	ENSMUSG00000029119	Man2b2	mKIAA0935	mannosidase 2, alpha B2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70453430-5	chr11	70453353	70453553	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_151497)	TTS (NR_151497)	1522.0	NM_025397	66172.0	Mm.46424	NM_025397	ENSMUSG00000018923	Med11	1110030J09Rik|AI465144|AW545069	mediator complex subunit 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45062555-7	chr7	45062419	45062619	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022999)	promoter-TSS (NM_022999)	90.0	NM_025533	66394.0	Mm.272139	NM_025533	ENSMUSG00000003421	Nosip	2310061K06Rik|CGI-25	nitric oxide synthase interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-95488193-3	chr8	95488097	95488297	+	816.579346	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009974, intron 1 of 11)	intron (NM_009974, intron 1 of 11)	623.0	NM_009974	13000.0	Mm.51136	NM_009974	ENSMUSG00000046707	Csnk2a2	1110035J23Rik|C77789|CK2	casein kinase 2, alpha prime polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81361032-8	chr15	81360907	81361107	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011399)	promoter-TSS (NM_011399)	-242.0	NM_011399	20524.0	Mm.222536	NM_011399	ENSMUSG00000022404	Slc25a17	34kDa|47kDa|PMP34|Pmp47	solute carrier family 25 (mitochondrial carrier, peroxisomal membrane protein), member 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-118389383-4	chr1	118389297	118389497	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001359346, exon 1 of 38)	5' UTR (NM_001359346, exon 1 of 38)	339.0	NM_001359334	76707.0	Mm.138740	NM_029709	ENSMUSG00000064302	Clasp1	1700030C23Rik|5730583A19Rik|B130045P17Rik|CLASP1alpha	CLIP associating protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-57651712-4	chr3	57651604	57651804	+	999.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175095)	promoter-TSS (NM_175095)	-20.0	NM_175095	52245.0	Mm.21901	NM_175095	ENSMUSG00000036513	Commd2	1190017G07Rik|AI047739|D3Ertd176e|HSPC042	COMM domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85710791-4	chr12	85710688	85710888	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24068.0	NM_016767	53314.0	Mm.6672	NM_016767	ENSMUSG00000034266	Batf	B-ATF|SFA-2	basic leucine zipper transcription factor, ATF-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6289865-2	chr19	6289765	6289965	+	933.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010119, intron 2 of 4)	intron (NM_010119, intron 2 of 4)	12969.0	NM_010119	13660.0	Mm.30169	NM_010119	ENSMUSG00000024772	Ehd1	AA409636|Past1|RME-1	EH-domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-132609153-2	chr2	132609053	132609253	+	573.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_033469, intron 2 of 3)	ORR1E|LTR|ERVL-MaLR	10957.0	NR_033469	767814.0	Mm.371752	NR_033468	ENSMUSG00000074783	AU019990	-	expressed sequence AU019990	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128345067-4	chr10	128344950	128345150	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026444, intron 1 of 10)	intron (NM_026444, intron 1 of 10)	7323.0	NM_026444	12974.0	Mm.58836	NM_026444	ENSMUSG00000005683	Cs	2610511A05Rik|9030605P22Rik|Ahl4|BB234005|Cis	citrate synthase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-44058470-2	chr5	44058370	44058570	+	794.583313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163578, intron 2 of 22)	intron (NM_001163578, intron 2 of 22)	36298.0	NM_001163581	19126.0	Mm.6250	NM_008935	ENSMUSG00000029086	Prom1	4932416E19Rik|AC133|CD133|Prom|Prom-1|Proml1	prominin 1	protein-coding	0.570959944699062	1.21835629561809	0.429870481086682	0.422741417155319	1.20727214646967	0.984786743746434	0.431898351955455	0.60860349193647	0.665395006524266	0.695912488702374	1
Merged-chr4-101641223-1	chr4	101641123	101641323	+	569.0	f0_balb.idr	3' UTR (NM_001164585, exon 20 of 20)	3' UTR (NM_001164585, exon 20 of 20)	-6560.0	NM_175036	230514.0	Mm.4756	NM_175036	ENSMUSG00000035212	Leprot	LEPR|OB-RGRP|Obrgrp|VPS55	leptin receptor overlapping transcript	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-5218387-2	chr3	5218287	5218487	+	679.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030708)	promoter-TSS (NM_030708)	-167.0	NM_030708	80892.0	Mm.41522	NM_030708	ENSMUSG00000025255	Zfhx4	A930021B15|C130041O22Rik|Zfh-4|Zfh4	zinc finger homeodomain 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128431880-2	chr2	128431780	128431980	+	586.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-2529.0	NR_028590	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-22142546-3	chr3	22142432	22142632	+	859.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030732, intron 1 of 15)	intron (NM_030732, intron 1 of 15)	65880.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-24405813-2	chr2	24405713	24405913	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_177611, exon 16 of 17)	exon (NM_177611, exon 16 of 17)	19197.0	NM_001355232	215632.0	Mm.490434	NM_177611	ENSMUSG00000026979	Psd4	BC046518|EFA6B	pleckstrin and Sec7 domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72151949-2	chr6	72151849	72152049	+	962.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001035228, intron 6 of 6)	intron (NM_001035228, intron 6 of 6)	-28752.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-138973755-4	chr1	138973708	138973908	+	908.616699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181347, intron 1 of 20)	intron (NM_181347, intron 1 of 20)	-3849.0	NR_108103	78229.0	Mm.437838	NR_108103	ENSMUSG00000104900	4930596I21Rik	-	RIKEN cDNA 4930596I21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-59612515-3	chr2	59612489	59612689	+	903.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198294, intron 1 of 26)	CpG	547.0	NM_198294	66860.0	Mm.27917	NM_198294	ENSMUSG00000035168	Tanc1	1200003E16Rik|Tanc|mKIAA1728	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-123853733-3	chr9	123853655	123853855	+	791.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011798, exon 2 of 2)	3' UTR (NM_011798, exon 2 of 2)	-1856.0	NM_001110253	17281.0	Mm.252941	NM_148925	ENSMUSG00000025241	Fyco1	2810409M01Rik|Mem2|RUFY3|ZFYVE7	FYVE and coiled-coil domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-6451410-4	chr2	6451298	6451498	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	98662.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118142005-2	chr11	118141905	118142105	+	694.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12786.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-15967467-4	chr7	15967357	15967557	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153068)	promoter-TSS (NM_153068)	78.0	NM_153068	259300.0	Mm.138215	NM_153068	ENSMUSG00000074364	Ehd2	BC027084|C130052H20Rik	EH-domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83441709-4	chr6	83441619	83441819	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183138)	promoter-TSS (NM_183138)	-36.0	NR_028382	320775.0	Mm.434334	NR_028382	ENSMUSG00000051844	B230319C09Rik	-	RIKEN cDNA B230319C09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-72467198-4	chr11	72467120	72467320	+	956.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153060, intron 2 of 12)	MIRc|SINE|MIR	7807.0	NM_001276383	216892.0	Mm.212812	NM_153060	ENSMUSG00000040447	Spns2	-	spinster homolog 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-13773359-2	chr11	13773259	13773459	+	551.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	405682.0	NR_131011	75280.0	Mm.108492	NR_131011	ENSMUSG00000085452	4930554G24Rik	-	RIKEN cDNA 4930554G24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-105012720-4	chr5	105012613	105012813	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR10_RN|LTR|ERVK	-29996.0	NM_030239	27405.0	Mm.389663	NM_030239	ENSMUSG00000029299	Abcg3	Abcp2|Mxr2	ATP binding cassette subfamily G member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132806996-4	chr4	132806900	132807100	+	922.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-10636.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-52961721-4	chr2	52961715	52961915	+	827.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	103947.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-70010548-4	chr12	70010441	70010641	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001081453)	TTS (NM_001081453)	-23539.0	NM_022028	64010.0	Mm.390480	NM_022028	ENSMUSG00000021067	Sav1	1700040G09Rik|Salv|Sav|WW45|Wwp3|Wwp4	salvador family WW domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-116972289-4	chr2	116972188	116972388	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	72136.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-120137926-4	chr14	120137839	120138039	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-95504.0	NM_001001490	239283.0	Mm.138520	NM_001001490	ENSMUSG00000044819	Oxgr1	Cysltr3|Gm299|Gpr80|Gpr99|P2Y15	oxoglutarate (alpha-ketoglutarate) receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-25014083-6	chr17	25013965	25014165	+	844.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020608, intron 1 of 20)	CpG	1165.0	NM_020608	57354.0	Mm.328854	NM_020608	ENSMUSG00000038002	Cramp1l	5830477H08Rik|AI256853|AI790734|Cramp1|Tce4|mKIAA1426	cramped chromatin regulator homolog 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-140127208-3	chr7	140127139	140127339	+	881.357178	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153783, intron 2 of 6)	intron (NM_153783, intron 2 of 6)	1554.0	NM_153783	212503.0	Mm.486735	NM_153783	ENSMUSG00000025464	Paox	2410012F02Rik|AI118225|Pao	polyamine oxidase (exo-N4-amino)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-134081773-2	chr1	134081673	134081873	+	869.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-2618.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-86229125-2	chr15	86229025	86229225	+	712.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145476, intron 1 of 12)	URR1B|DNA|hAT-Charlie	14666.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-12803620-4	chr7	12803514	12803714	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_026046)	TTS (NM_026046)	15246.0	NM_026046	67230.0	Mm.333574	NM_026046	ENSMUSG00000057894	Zfp329	2810439M05Rik|4632409L22Rik|ZNF329	zinc finger protein 329	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-53807498-2	chr19	53807398	53807598	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001170847, intron 1 of 13)	MLT1D|LTR|ERVL-MaLR	-84733.0	NM_011050	18569.0	Mm.1605	NM_011050	ENSMUSG00000024975	Pdcd4	D19Ucla1|Ma3|Tis	programmed cell death 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-84993834-2	chr11	84993782	84993982	+	704.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001029934, intron 30 of 33)	RMER6A|LTR|ERVK	36128.0	NM_007607	12351.0	Mm.1641	NM_007607	ENSMUSG00000000805	Car4	AW456718|Ca4	carbonic anhydrase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-29624476-4	chr2	29624364	29624564	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054050, intron 1 of 23)	intron (NM_054050, intron 1 of 23)	4744.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-64578301-1	chr18	64578201	64578401	+	642.0	f0_balb.idr	intron (NM_001001488, intron 4 of 27)	intron (NM_001001488, intron 4 of 27)	-61744.0	NM_001142950	70223.0	Mm.29192	NM_027350	ENSMUSG00000024587	Nars	3010001M15Rik|AA960128|ASNRS|C78150	asparaginyl-tRNA synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-88424805-3	chr1	88424702	88424902	+	738.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029269, intron 7 of 7)	intron (NM_029269, intron 7 of 7)	17792.0	NM_029269	75396.0	Mm.173058	NM_029269	ENSMUSG00000026295	Spp2	0610038O04Rik|pp-24|spp24	secreted phosphoprotein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-25014197-2	chr8	25014086	25014286	+	556.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001270996, intron 1 of 21)	intron (NM_001270996, intron 1 of 21)	2736.0	NM_001270996	11502.0	Mm.28908	NM_007404	ENSMUSG00000031555	Adam9	AU020942|MDC9|Mltng|mKIAA0021	a disintegrin and metallopeptidase domain 9 (meltrin gamma)	protein-coding	-1.10196567847608	-1.08028584652754	-0.917702588917093	-0.563040453510935	-1.10147851642621	-1.07784325022935	-1.08900578035492	-1.09834132469131	-2.70815443805545	0.396673806156447	1
Merged-chr16-14477303-2	chr16	14477213	14477413	+	596.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-85004.0	NR_033556	545280.0	Mm.123679	NR_033556		A630010A05Rik	-	RIKEN cDNA A630010A05 gene	ncRNA	-1.00733067503544	-0.355904084206145	-1.00058786131317	-1.00343805316457	-1.00675126220713	-0.985467537217311	-0.809196184207577	-1.00302875517562	-1.93604557165487	0.53178015871534	1
Merged-chr9-103272192-3	chr9	103272094	103272294	+	770.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027918, intron 7 of 16)	intron (NM_027918, intron 7 of 16)	16103.0	NM_027918	71775.0	Mm.18802	NM_027918	ENSMUSG00000033688	1300017J02Rik	Ica|mICA	RIKEN cDNA 1300017J02 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-107025831-4	chr13	107025727	107025927	+	944.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015471, intron 1 of 3)	RMER6A|LTR|ERVK	3257.0	NR_015471	100040322.0	Mm.133867	NR_015471	ENSMUSG00000071181	3830408C21Rik	-	RIKEN cDNA 3830408C21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-71239750-4	chr10	71239628	71239828	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1684.0	NM_009360	21780.0	Mm.229292	NM_009360	ENSMUSG00000003923	Tfam	AI661103|Hmgts|mtTFA|tsHMG	transcription factor A, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-93555437-2	chr15	93555337	93555537	+	906.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033217, intron 1 of 7)	MTD|LTR|ERVL-MaLR	40454.0	NM_001033217	106042.0	Mm.150314	NM_001033217	ENSMUSG00000036158	Prickle1	1110058P22Rik|AW215793|Prickle|b2b019Clo|mpk1	prickle planar cell polarity protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-41819666-4	chr13	41819553	41819753	+	963.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145875, intron 2 of 6)	intron (NM_001145875, intron 2 of 6)	27835.0	NM_175417	109254.0	Mm.25195	NM_175417	ENSMUSG00000058022	Adtrp	9530008L14Rik	androgen dependent TFPI regulating protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-6827970-4	chr17	6827901	6828101	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-45221.0	NM_009510	22350.0	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	5.33318272729299	5.60537558532715	3.98853648117932	4.69208168966759	4.91084968118572	5.74746120943123	5.02107477339942	5.56964768797038	0.37012074499713	0.327162664108299	0.82963878624166
Merged-chr9-121758478-2	chr9	121758378	121758578	+	1000.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033503, exon 1 of 1)	non-coding (NR_033503, exon 1 of 1)	1465.0	NR_033503	320301.0	Mm.373883	NR_033503		E530011L22Rik	-	RIKEN cDNA E530011L22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-11481859-4	chr4	11481733	11481933	+	848.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4125.0	NM_001081183	66185.0	Mm.331487	NM_001081183	ENSMUSG00000040720	Virma	1110037F02Rik|4930422M05Rik|Kiaa1429|mKIAA1429	vir like m6A methyltransferase associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-114797715-4	chr9	114797575	114797775	+	948.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027294, intron 1 of 3)	intron (NM_027294, intron 1 of 3)	-15682.0	NM_001252479	102545.0	Mm.35600	NM_133978	ENSMUSG00000032436	Cmtm7	AI481279|Cklfsf7|LNV	CKLF-like MARVEL transmembrane domain containing 7	protein-coding	0.244340558149491	0.310248715543374	0.769661015401858	0.112311417002467	0.371096012894991	0.123413265464045	0.569077554315342	0.113060003987494	-0.552161643775049	0.774977466984962	1
Merged-chr2-85038737-1	chr2	85038637	85038837	+	547.0	f1_c57bl6.idr	intron (NM_182990, intron 3 of 16)	intron (NM_182990, intron 3 of 16)	1286.0	NM_001136081	20833.0	Mm.219793	NM_182990	ENSMUSG00000027067	Ssrp1	C81323|Hmg1-rs1|Hmgi-rs3|Hmgox|T160	structure specific recognition protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101357906-2	chr7	101357809	101358009	+	969.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001040111, intron 1 of 33)	intron (NM_001040111, intron 1 of 33)	9840.0	NM_001040111	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	1.7665355922939	1.62497190792705	1.02399384543279	1.38220573642796	1.17418782900965	2.0134405120735	1.83496571687631	1.66218227122101	0.737078521860697	0.524519077373154	0.948340152465298
Merged-chr1-106101257-3	chr1	106101145	106101345	+	762.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	70279.0	NR_040630	626049.0	Mm.247410	NR_040630	ENSMUSG00000101583	Gm20753	-	predicted gene, 20753	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-17394184-3	chr17	17394081	17394281	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_025934, exon 10 of 10)	3' UTR (NM_025934, exon 10 of 10)	-8505.0	NM_025681	66643.0	Mm.268018	NM_025681	ENSMUSG00000047786	Lix1	5730466L18Rik	limb and CNS expressed 1	protein-coding	1.58383232722665	1.94425217553007	2.64669984601458	2.64458686678869	1.41529518217552	2.1152688869545	2.29362051205675	1.67061450926416	-0.913544574810556	0.342249079050886	0.84341457971776
Merged-chr17-33928670-1	chr17	33928570	33928770	+	781.0	f1_balb.idr	3' UTR (NM_009318, exon 8 of 8)	3' UTR (NM_009318, exon 8 of 8)	-1224.0	NM_009059	19732.0	Mm.43777	NM_009059	ENSMUSG00000041354	Rgl2	KE1.5|Rab2l|Rgt2|Rlf	ral guanine nucleotide dissociation stimulator-like 2	protein-coding	1.3787867569277	0.854597295501101	1.62412724361836	0.827898190377851	1.67427320727887	1.44221409610683	1.74372517464031	0.829964206512212	0.901481432426871	0.518892003861263	0.947641799425091
Merged-chr17-5253801-2	chr17	5253701	5253901	+	790.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 5 of 19)	ID_B1|SINE|B4	164966.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-110615386-4	chr7	110615294	110615494	+	972.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177324)	promoter-TSS (NM_177324)	-474.0	NM_177324	319934.0	Mm.102970	NM_177324	ENSMUSG00000038371	Sbf2	4833411B01Rik|AA414977|AI317167|B430219L04Rik|Mtmr13|mMTMH1	SET binding factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-182376365-3	chr1	182376262	182376462	+	894.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32805.0	NM_173378	209456.0	Mm.287450	NM_173378	ENSMUSG00000026510	Trp53bp2	53BP2|AI746547|ASPP2|PPP1R13A|Tp53bp2|X98550	transformation related protein 53 binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-86442464-8	chr1	86442368	86442568	+	997.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	16139.0	NM_027966	71863.0	Mm.179627	NM_027966	ENSMUSG00000036574	Tex44	1700019O17Rik	testis expressed 44	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-33176144-4	chr12	33176055	33176255	+	995.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028139, intron 2 of 3)	intron (NM_028139, intron 2 of 3)	28469.0	NM_028139	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	1.21471489698802	1.40378745752197	0.635903118637171	1.08186455463287	0.775082906358445	0.856496946113363	0.638074932680351	1.20285801850354	-1.09847655403245	0.462195938025678	0.921194606787634
Merged-chr5-3362188-4	chr5	3362074	3362274	+	950.974976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 2 of 7)	intron (NM_009873, intron 2 of 7)	18281.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-41818953-3	chr15	41818854	41819054	+	757.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152565, intron 8 of 17)	intron (NR_152565, intron 8 of 17)	-12004.0	NM_001130164	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78449307-4	chr15	78449160	78449360	+	884.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355601, intron 10 of 17)	intron (NM_001355601, intron 10 of 17)	19374.0	NM_001355601	71753.0	Mm.34056	NM_027902	ENSMUSG00000016942	Tmprss6	1300008A22Rik	transmembrane serine protease 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-8673094-2	chr12	8672994	8673194	+	557.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1040.0	NM_001160221	80913.0	Mm.341243	NM_030723	ENSMUSG00000020594	Pum2	5730503J23Rik|Pumm2	pumilio RNA-binding family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-21786068-2	chr13	21785968	21786168	+	652.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_178184)	TTS (NM_178184)	1150.0	NM_178184	319170.0		NM_178184	ENSMUSG00000069309	Hist1h2an	-	histone cluster 1, H2an	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41895737-4	chr19	41895649	41895849	+	977.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199447, intron 1 of 33)	intron (NM_199447, intron 1 of 33)	404.0	NM_199447	107094.0	Mm.276044	NM_199447	ENSMUSG00000035049	Rrp12	AA408556|AA536972|mKIAA0690	ribosomal RNA processing 12 homolog (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-50018962-4	chr11	50018869	50019069	+	799.512512	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6362.0	NM_021540	59044.0	Mm.359004	NM_021540	ENSMUSG00000020376	Rnf130	2510042A13Rik|G1RZFP|G1rp|GOLIATH|GP	ring finger protein 130	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101176420-2	chr11	101176320	101176520	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007721)	promoter-TSS (NM_007721)	303.0	NM_016782	53321.0	Mm.474527	NM_016782	ENSMUSG00000017167	Cntnap1	AI841080|Caspr|NCP1|Nrxn4|p190|shm	contactin associated protein-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-125472677-2	chr7	125472600	125472800	+	992.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360659, intron 2 of 7)	intron (NM_001360659, intron 2 of 7)	18842.0	NM_001360659	67711.0	Mm.4467	NM_026330	ENSMUSG00000030750	Nsmce1	2510027N19Rik	NSE1 homolog, SMC5-SMC6 complex component	protein-coding	1.49030391256108	0.908166972283207	0.887554297672269	0.87116167925122	2.0538322730796	1.56236001108129	2.3283496521511	1.45248628341745	2.92502365376088	0.0269476612332681	0.220143921568373
Merged-chr5-143510578-3	chr5	143510464	143510664	+	818.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347530, intron 3 of 6)	intron (NM_001347530, intron 3 of 6)	17429.0	NM_009007	19353.0	Mm.292510	NM_009007	ENSMUSG00000001847	Rac1	AL023026|D5Ertd559e	Rac family small GTPase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-82326660-4	chr12	82326563	82326763	+	962.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167983, intron 4 of 23)	intron (NM_001167983, intron 4 of 23)	15314.0	NM_172579	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-42682233-2	chr10	42682133	42682333	+	779.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_172416, intron 1 of 5)	intron (NM_172416, intron 1 of 5)	3317.0	NM_172416	14628.0	Mm.46636	NM_172416	ENSMUSG00000038280	Ostm1	1200002H13Rik|HSPC019|gl	osteopetrosis associated transmembrane protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-53890539-4	chr1	53890473	53890673	+	818.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001883, intron 15 of 28)	intron (NM_001001883, intron 15 of 28)	41149.0	NR_106149	102465783.0		NR_106149	ENSMUSG00000098443	Mir7681	Gm27806|mmu-mir-7681	microRNA 7681	ncRNA	0.636497682721401	0.659860501433774	0.821377207283896	0.941535669647575	1.27942614343143	0.661602205006153	1.4752796740801	1.17812823197666	2.47441124447664	0.124084116258876	0.552074620596042
Merged-chr7-3595394-4	chr7	3595276	3595476	+	816.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20781.0	NM_175632	232790.0	Mm.358882	NM_175632	ENSMUSG00000054594	Oscar	mOSCAR|mOSCAR-M1|mOSCAR-M2|mOSCAR-M3	osteoclast associated receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4936278-4	chr16	4936147	4936347	+	844.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_037666, intron 2 of 2)	intron (NR_037666, intron 2 of 2)	-2864.0	NM_001316715	66911.0	Mm.428698	NM_025839	ENSMUSG00000022516	Nudt16l1	1110001K21Rik|5330437I08Rik|Sdos	nudix (nucleoside diphosphate linked moiety X)-type motif 16-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-118910644-5	chr14	118910537	118910737	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360412, intron 8 of 22)	L1MC3|LINE|L1	12154.0	NM_001360413	66573.0	Mm.87456	NM_025943	ENSMUSG00000042156	Dzip1	2510025K24Rik|2810422M04Rik	DAZ interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135475658-3	chr5	135475552	135475752	+	863.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146001, intron 1 of 30)	MTD|LTR|ERVL-MaLR	69470.0	NM_146001	215114.0	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-21201700-2	chr13	21201751	21201951	+	746.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER5|LTR|ERV1	21920.0	NM_009054	19720.0	Mm.314056	NM_009054	ENSMUSG00000021326	Trim27	AW538890|Gm19403|Rfp	tripartite motif-containing 27	protein-coding	-0.241032416369557	-0.586144986985429	-0.589342733671824	-0.0848509162436911	-0.457367898054197	-0.585421997730077	-0.588638803738846	-0.591370631435844	-2.34370454249342	0.380510657069455	1
Merged-chr3-69756699-4	chr3	69756594	69756794	+	896.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34639.0	NM_133787	97112.0	Mm.21062	NM_133787	ENSMUSG00000027787	Nmd3	C87860	NMD3 ribosome export adaptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98148930-4	chr11	98148837	98149037	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028149, intron 1 of 14)	intron (NM_028149, intron 1 of 14)	679.0	NM_028149	72194.0	Mm.218350	NM_028149	ENSMUSG00000020883	Fbxl20	2610511F20Rik|4632423N09Rik|AI849362|AL117906|C86145|Fbl2|Scr|mKIAA4147	F-box and leucine-rich repeat protein 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-74010513-8	chr13	74010324	74010524	+	859.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_182839, intron 1 of 3)	intron (NM_182839, intron 1 of 3)	1005.0	NM_182839	72948.0	Mm.39752	NM_182839	ENSMUSG00000021573	Tppp	2900041A09Rik|AI849835	tubulin polymerization promoting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-98584746-4	chr7	98584658	98584858	+	822.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	71811.0	NM_172280	233545.0	Mm.387819	NM_172280	ENSMUSG00000035401	Emsy	2210018M11Rik|2310016L09Rik|AU019521|AU019557	EMSY, BRCA2-interacting transcriptional repressor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-85695388-3	chr4	85695287	85695487	+	962.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Charlie5|DNA|hAT-Charlie	-358528.0	NM_029967	77739.0	Mm.331690	NM_029967	ENSMUSG00000066113	Adamtsl1	5930437A14Rik|6720426B09Rik|ADAMTSL-1	ADAMTS-like 1	protein-coding	-1.56355737717652	-1.81244775989375	-1.82128546162293	-1.82854501295842	-1.83962066705452	-1.81053259306168	-1.81928479966835	-1.82724555674025	-1.28500227969968	0.715751224811686	1
Merged-chr12-17748239-4	chr12	17748147	17748347	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016677, intron 1 of 3)	intron (NM_016677, intron 1 of 3)	57438.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-98883584-2	chr7	98883484	98883684	+	948.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44739.0	NM_001285795	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-107269408-4	chr8	107269269	107269469	+	972.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_039557, intron 2 of 3).3	MTE2b|LTR|ERVL-MaLR	13205.0	NR_039557	100628577.0		NR_039557	ENSMUSG00000093061	Mir5098	mmu-mir-5098|mu-mir-5098	microRNA 5098	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-35049251-3	chr12	35049146	35049346	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001014973, intron 1 of 25)	intron (NM_001014973, intron 1 of 25)	2057.0	NM_001014973	217463.0	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	1.8854177985983	1.98505960557504	1.22212392045793	2.18242303637592	1.90047548167712	2.12662705839457	1.93460289584589	1.74603682810151	0.168293542071509	0.867833520738681	0.998431161219273
Merged-chr17-8814959-1	chr17	8814859	8815059	+	765.0	f1_c57bl6.idr	intron (NM_011866, intron 1 of 21)	intron (NM_011866, intron 1 of 21)	13214.0	NM_011866	23984.0	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-50203891-2	chr11	50203791	50203991	+	807.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290769, intron 5 of 7)	intron (NM_001290769, intron 5 of 7)	6929.0	NM_001290769	18412.0	Mm.40828	NM_011018	ENSMUSG00000015837	Sqstm1	A170|OSF-6|Osi|STAP|STONE14|p62	sequestosome 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-41011881-2	chr8	41011798	41011998	+	891.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001005863, intron 7 of 13)	intron (NM_001005863, intron 7 of 13)	-5570.0	NR_015457	78849.0	Mm.440930	NR_015457	ENSMUSG00000084960	B430010I23Rik	-	RIKEN cDNA B430010I23 gene	ncRNA	0.525460343794279	0.899853460678634	0.26310603220411	0.257667424197745	0.249959832942442	0.911288438451718	0.742284392030327	0.258618449168985	0.355795456312516	0.853049596317422	1
Merged-chr8-36158231-1	chr8	36158131	36158331	+	785.0	f0_balb.idr	intron (NR_151736, intron 2 of 3)	intron (NR_151736, intron 2 of 3)	2221.0	NR_151736	330738.0	Mm.128075	NR_151736	ENSMUSG00000109704	Gm38414	A230084N10|Gm45568	predicted gene, 38414	ncRNA	1.60215433567382	0.881705487041315	0.859539245840994	1.57972480767573	0.815858146182234	1.97520364607495	2.48169598862546	1.28056993971003	1.53282264259087	0.246328954207495	0.74563204527445
Merged-chr7-145256695-2	chr7	145256595	145256795	+	571.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_132644, intron 21 of 24)	intron (NR_132644, intron 21 of 24)	27316.0	NR_132644	233979.0	Mm.102235	NM_146206	ENSMUSG00000048677	Tpcn2	D830047E22Rik|Gm35086	two pore segment channel 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-40538484-4	chr12	40538392	40538592	+	906.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	92439.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-16343151-2	chr2	16343051	16343251	+	586.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-13153.0	NM_026162	67448.0	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-31232744-2	chr16	31232644	31232844	+	571.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31506.0	NM_030138	78618.0	Mm.274646	NM_030138	ENSMUSG00000049076	Acap2	4832442G16|9530039J15Rik|CNT-B2|Centb2|mKIAA0041	ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-73239065-3	chr14	73238979	73239179	+	870.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175116, exon 1 of 1)	exon (NM_175116, exon 1 of 1)	1188.0	NM_175116	67168.0	Mm.390681	NM_175116	ENSMUSG00000033446	Lpar6	2610302I02Rik|P2ry5|P2y5	lysophosphatidic acid receptor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47503262-2	chr17	47503162	47503362	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022015)	promoter-TSS (NM_022015)	-971.0	NM_022015	63856.0	Mm.275901	NM_022015	ENSMUSG00000023980	Taf8	AW260255|Tbn	TATA-box binding protein associated factor 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-105813453-1	chr1	105813353	105813553	+	561.0	f0_balb.idr	intron (NM_009399, intron 3 of 9)	intron (NM_009399, intron 3 of 9)	32730.0	NM_009399	21934.0	Mm.6251	NM_009399	ENSMUSG00000026321	Tnfrsf11a	Ly109|ODFR|OFE|Rank|TRANCE-R|mRANK	tumor necrosis factor receptor superfamily, member 11a, NFKB activator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-36875040-4	chr16	36874936	36875136	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134111)	promoter-TSS (NM_134111)	-210.0	NM_134111	106389.0	Mm.432078	NM_134111	ENSMUSG00000022838	Eaf2	AW048865|FESTA-L|FESTA-S|Festa|Traits|U19	ELL associated factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-4432473-4	chr10	4432370	4432570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025343)	promoter-TSS (NM_025343)	-82.0	NM_001358796	66084.0	Mm.153111	NM_025343	ENSMUSG00000019763	Rmnd1	0610042C05Rik|AA408137|AI462664|AW536662	required for meiotic nuclear division 1 homolog	protein-coding	4.89368604252243	4.26955485091042	6.10644692078358	5.32359088477243	6.14477663314127	6.02005253730042	6.34918122811949	5.89965504345322	0.8975501372927	0.00669086023860807	0.0824196765444214
Merged-chr11-103375975-3	chr11	103375869	103376069	+	857.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183034, intron 7 of 11)	PB1D10|SINE|Alu	-12277.0	NM_001205236	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	2.16339351891982	1.82768085110107	1.76229284275204	3.67557024087514	2.84526379693648	3.58436732901971	2.78905814333061	2.9941354983685	0.76422203237948	0.347888534647663	0.84779281761056
Merged-chr19-25610628-2	chr19	25610528	25610728	+	573.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177360)	promoter-TSS (NM_177360)	91.0	NM_177360	240590.0	Mm.62785	NM_177360	ENSMUSG00000042372	Dmrt3	-	doublesex and mab-3 related transcription factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-13663452-3	chr9	13663361	13663561	+	711.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173776, intron 1 of 3)	intron (NM_173776, intron 1 of 3)	1001.0	NM_173776	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81402856-2	chr10	81402756	81402956	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026756, intron 8 of 8)	intron (NM_026756, intron 8 of 8)	-6719.0	NR_152732	102634174.0	Mm.392213	NR_152732	ENSMUSG00000085327	Gm16104	-	predicted gene 16104	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-11915722-3	chr18	11915629	11915829	+	780.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146287, intron 4 of 9)	intron (NM_001146287, intron 4 of 9)	-75291.0	NR_035447	100316686.0		NR_035447	ENSMUSG00000084565	Mir1901	Mirn1901|mmu-mir-1901	microRNA 1901	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-101652630-3	chr14	101652516	101652716	+	906.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1351.0	NM_016723	50933.0	Mm.275970	NM_016723	ENSMUSG00000022111	Uchl3	-	ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75509053-3	chr11	75508898	75509098	+	749.900024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138659, intron 41 of 41)	intron (NM_138659, intron 41 of 41)	-1096.0	NM_001029938	280408.0	Mm.41416	NM_001029938	ENSMUSG00000038195	Rilp	AI835553|Gm857	Rab interacting lysosomal protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-50604679-2	chr9	50604579	50604779	+	784.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025848)	promoter-TSS (NM_025848)	778.0	NM_013897	30057.0	Mm.335149	NM_013897	ENSMUSG00000039016	Timm8b	Tim8b	translocase of inner mitochondrial membrane 8B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-115695790-4	chr3	115695690	115695890	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19265.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	0.728737804515171	0.988759148628525	0.959563619502954	0.745624367566577	1.63732309106206	1.46993905520417	1.41243870247161	1.36197612282985	3.27947763280683	0.0283320340505272	0.228135040716693
Merged-chr7-127512972-4	chr7	127512870	127513070	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_024331)	promoter-TSS (NR_024331)	-101.0	NR_024331	629159.0	Mm.256720	NR_024331	ENSMUSG00000101225	1700008J07Rik	AW048743	RIKEN cDNA 1700008J07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-95529671-3	chr10	95529600	95529800	+	811.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080560, intron 1 of 3)	intron (NM_080560, intron 1 of 3)	14538.0	NM_080560	93765.0	Mm.371667	NM_080560	ENSMUSG00000074781	Ube2n	1500026J17Rik|AL022654|BB101821|UBC13	ubiquitin-conjugating enzyme E2N	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-110816288-3	chr7	110816195	110816395	+	824.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_025999)	TTS (NM_025999)	28086.0	NM_025999	67150.0	Mm.96867	NM_025999	ENSMUSG00000030788	Rnf141	2610110L04Rik|AA792898|AU022812|ZFP36|ZNF230	ring finger protein 141	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-43580737-2	chr7	43580637	43580837	+	590.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357769, intron 1 of 3)	intron (NM_001357769, intron 1 of 3)	1151.0	NM_001357769	210105.0	Mm.234422	NM_172482	ENSMUSG00000030469	Zfp719	8030458J18|9430094P17Rik|C630016O21Rik|mszf6	zinc finger protein 719	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-45837876-2	chr1	45837776	45837976	+	762.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42710.0	NM_028599	73674.0	Mm.270376	NM_028599	ENSMUSG00000025995	Wdr75	1300003A18Rik|2410118I19Rik|C77608	WD repeat domain 75	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141468735-4	chr7	141468628	141468828	+	995.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001111050)	promoter-TSS (NM_001111050)	-61.0	NM_001111050	12476.0	Mm.30246	NM_009842	ENSMUSG00000025510	Cd151	PETA-3|SFA-1|Tspan24	CD151 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46510151-2	chr19	46510051	46510251	+	934.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_053100, intron 1 of 5)	intron (NM_053100, intron 1 of 5)	8503.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64412567-4	chr5	64412455	64412655	+	983.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55387.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-33903502-4	chr17	33903411	33903611	+	915.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER4A|LTR|ERVK	-1624.0	NR_040470	474160.0	Mm.206186	NR_040470	ENSMUSG00000092349	Platr17	-	pluripotency associated transcript 17	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-29917543-2	chr6	29917443	29917643	+	559.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037740, intron 1 of 20)	intron (NM_001037740, intron 1 of 20)	530.0	NM_001037740	320609.0	Mm.56097	NM_177204	ENSMUSG00000039629	Strip2	D330017J20Rik|Fam40b	striatin interacting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95504923-2	chr3	95504823	95505023	+	663.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007802, intron 5 of 7)	intron (NM_007802, intron 5 of 7)	5713.0	NM_007802	13038.0	Mm.272085	NM_007802	ENSMUSG00000028111	Ctsk	AI323530|MMS10-Q|Ms10q|catK	cathepsin K	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-38348759-4	chr18	38348657	38348857	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9764.0	NM_011937	26384.0	Mm.22374	NM_011937	ENSMUSG00000052102	Gnpda1	GNPDA|Gnp1|Gnpi|oscillin	glucosamine-6-phosphate deaminase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-110421151-4	chr5	110421046	110421246	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142642, intron 2 of 18)	intron (NM_001142642, intron 2 of 18)	27357.0	NM_001317042	381668.0	Mm.348782	NM_028596	ENSMUSG00000043323	Fbrsl1	2410025L10Rik|AI467568|Gm1049|Gm29766|mKIAA1545	fibrosin-like 1	protein-coding	3.6442812101386	2.74492679970127	2.79747012783635	3.43421215059568	3.61667301629713	3.30285885149816	3.55903226048827	4.2299999379414	0.772610576633334	0.177238760400737	0.647011353130235
Merged-chr1-171843803-3	chr1	171843633	171843833	+	747.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289470, intron 2 of 8)	B1F2|SINE|Alu	4036.0	NM_013489	12523.0	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	1.80305545837776	1.87442754917724	1.19306389985037	2.57060416933637	1.68488882874942	2.4114438700967	1.44877572253538	2.43119683981789	0.259422353933014	0.803407850253975	0.998431161219273
Merged-chr9-106436936-2	chr9	106436836	106437036	+	819.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001276442, exon 3 of 15)	exon (NM_001276442, exon 3 of 15)	1300.0	NM_001276442	109652.0	Mm.7165	NM_025371	ENSMUSG00000023262	Acy1	1110014J22Rik|Acy-1	aminoacylase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-39641763-4	chr8	39641652	39641852	+	971.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113326, intron 1 of 9)	intron (NM_001113326, intron 1 of 9)	926.0	NM_031195	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-172003656-1	chr1	172003556	172003756	+	733.5	f0_balb.idr	3' UTR (NM_033509, exon 8 of 8)	3' UTR (NM_033509, exon 8 of 8)	23639.0	NM_033509	93840.0	Mm.36148	NM_033509	ENSMUSG00000026556	Vangl2	C530001F03Rik|Lootl|Lp|Lpp1|Ltap|Vang1l2|loop-tail|ska17|ska<m17Jus>|stbm|strabismus	VANGL planar cell polarity 2	protein-coding	0.65643801512684	0.712059970786857	0.934175948268304	0.680461846591968	1.61873681450633	1.9690703909764	1.8868007562485	0.911424133174303	4.38663239260059	0.0038738507642279	0.0548095064495358
Merged-chr7-4739856-4	chr7	4739749	4739949	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001115018)	promoter-TSS (NM_001115018)	-278.0	NM_146177	232811.0	Mm.247844	NM_146177	ENSMUSG00000059851	Kmt5c	BC024816|Suv4-20h2|Suv420h2	lysine methyltransferase 5C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-143373895-3	chr6	143373792	143373992	+	826.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	128004.0	NR_027803	52285.0	Mm.354898	NM_001033129		D6Ertd474e	1700001I24Rik|AU023129	DNA segment, Chr 6, ERATO Doi 474, expressed	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-46283010-4	chr9	46282909	46283109	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146000)	promoter-TSS (NM_146000)	-3.0	NM_146000	215051.0	Mm.32648	NM_146000	ENSMUSG00000032077	Bud13	AV305342|D030060M11Rik	BUD13 homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-45865922-4	chr1	45865827	45866027	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	59667.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-65064803-4	chr14	65064705	65064905	+	979.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360385, intron 3 of 5)	RMER10B|LTR|ERVL	33301.0	NM_018788	54616.0	Mm.103748	NM_018788	ENSMUSG00000021978	Extl3	2900009G18Rik|AU040105|Ext1l|mKIAA0519	exostoses (multiple)-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-55505160-4	chr1	55505057	55505257	+	951.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114663, intron 1 of 5)	Lx8|LINE|L1	99211.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99082978-2	chr7	99082878	99083078	+	700.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 5 of 14)	intron (NM_178635, intron 5 of 14)	58166.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-50639479-2	chr4	50639379	50639579	+	635.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur2|LINE|L1	-577199.0	NM_001162865	74914.0	Mm.159368	NM_001162865	ENSMUSG00000039555	Cylc2	4930488P18Rik	cylicin, basic protein of sperm head cytoskeleton 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-38256412-1	chr16	38256312	38256512	+	563.0	f1_balb.idr	intron (NM_001098404, intron 2 of 8)	intron (NM_001098404, intron 2 of 8)	38412.0	NM_010936	18171.0	Mm.8509	NM_010936	ENSMUSG00000022809	Nr1i2	PXR|PXR.1|PXR.2|PXR1|SXR|mPXR	nuclear receptor subfamily 1, group I, member 2	protein-coding	-0.106302622567924	0.115117224183418	-0.0944740999081847	0.460327381895738	-0.105200262461616	-0.0874572336527017	-0.0932087361621743	0.743531504977503	0.451322421136041	0.843829044531605	1
Merged-chr6-29498094-2	chr6	29497994	29498194	+	758.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001029985, intron 13 of 37)	intron (NM_001029985, intron 13 of 37)	9858.0	NM_001029985	333088.0	Mm.332961	NM_001029985	ENSMUSG00000059022	Kcp	AW060220|CRIM-2|Crim2|Gm793|KCP-1	kielin/chordin-like protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-63247687-4	chr10	63247606	63247806	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359484, intron 3 of 22)	intron (NM_001359484, intron 3 of 22)	3909.0	NM_001359484	67345.0	Mm.234437	NM_026101	ENSMUSG00000020064	Herc4	1700056O17Rik|4921531D01Rik|9530080M15Rik|mKIAA1593	hect domain and RLD 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-16068306-2	chr19	16068206	16068406	+	640.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-64525.0	NM_008139	14682.0	Mm.439701	NM_008139	ENSMUSG00000024639	Gnaq	1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI	guanine nucleotide binding protein, alpha q polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-45332453-2	chr8	45332353	45332553	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133969, intron 1 of 10)	intron (NM_133969, intron 1 of 10)	743.0	NM_133969	102294.0	Mm.245297	NM_133969	ENSMUSG00000079057	Cyp4v3	AU043077|AW111961|Cyp4v2	cytochrome P450, family 4, subfamily v, polypeptide 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-113636034-4	chr5	113635933	113636133	+	989.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008153, intron 1 of 2)	intron (NM_008153, intron 1 of 2)	7570.0	NM_001359060	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-78751669-4	chr11	78751528	78751728	+	926.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_197989, exon 1 of 1)	exon (NM_197989, exon 1 of 1)	101.0	NM_197989	69109.0	Mm.341420	NM_197989	ENSMUSG00000049489	Fam58b	1810009O10Rik|Ccnq|Fam58a	family with sequence similarity 58, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141949683-4	chr7	141949575	141949775	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001276763)	promoter-TSS (NM_001276763)	-76.0	NM_001009930	75770.0	Mm.274868	NM_029426	ENSMUSG00000053046	Brsk2	4833424K13Rik|SAD-A|SADA	BR serine/threonine kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-121332875-1	chr7	121332775	121332975	+	978.0	f0_c57.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-59421.0	NM_001081327	195646.0	Mm.247449	NM_177575	ENSMUSG00000046321	Hs3st2	6430516N12Rik|A830061E14Rik|AW491345	heparan sulfate (glucosamine) 3-O-sulfotransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-89281665-6	chr6	89281589	89281789	+	915.388916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131021, intron 1 of 3)	intron (NR_131021, intron 1 of 3)	4036.0	NR_131021	75131.0	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	Gm44205	RIKEN cDNA 4930512J16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119023300-2	chr11	119023200	119023400	+	969.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_007623, exon 2 of 5)	exon (NM_007623, exon 2 of 5)	279.0	NM_007623	12416.0	Mm.14547	NM_007623	ENSMUSG00000025577	Cbx2	M33|MOD2|pc	chromobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-44602294-4	chr10	44602198	44602398	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-143550.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-84620062-2	chr2	84619962	84620162	+	576.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_007615, exon 6 of 20)	exon (NM_007615, exon 6 of 20)	29418.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5389774-3	chr19	5389643	5389843	+	681.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033224, exon 1 of 1)	non-coding (NR_033224, exon 1 of 1)	-1040.0	NM_016882	20227.0	Mm.34562	NM_016882	ENSMUSG00000039148	Sart1	U5-110K	squamous cell carcinoma antigen recognized by T cells 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-32586425-4	chr6	32586348	32586548	+	842.429199	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175750, intron 1 of 31)	intron (NM_175750, intron 1 of 31)	1744.0	NM_175750	243743.0	Mm.444029	NM_175750	ENSMUSG00000029765	Plxna4	9330117B14|Plxa4|mKIAA1550	plexin A4	protein-coding	1.92497893229992	2.47557522179137	1.09506318141514	1.92541193675946	2.41714811253549	1.12587873221269	1.87180723221553	1.31291842073836	-0.384144723896679	0.739325027652502	0.998431161219273
Merged-chr18-43493889-3	chr18	43493787	43493987	+	627.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55601.0	NM_001291455	22240.0	Mm.8180	NM_009468	ENSMUSG00000024501	Dpysl3	CRMP-4|DRP-3|TUC4|ULIP-1|Ulip|Ulip1	dihydropyrimidinase-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-47788062-1	chr6	47787962	47788162	+	1000.0	f1_c57bl6.idr	Intergenic	Intergenic	15590.0	NR_030485	735289.0		NR_030485	ENSMUSG00000076060	Mir704	Mirn704|mir-704|mmu-mir-704	microRNA 704	ncRNA	2.18549410019899	1.4059420892347	2.10173796208268	1.93164241230446	2.04057721133263	1.16009979795228	1.13661950021517	2.32217003201016	-0.406919042208864	0.72064871370956	0.998431161219273
Merged-chr4-138216735-2	chr4	138216635	138216835	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001122897)	promoter-TSS (NM_001122897)	123.0	NM_001285478	15441.0	Mm.348429	NM_010470	ENSMUSG00000028759	Hp1bp3	Hp1bp74	heterochromatin protein 1, binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80835910-2	chr10	80835810	80836010	+	653.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001013758, exon 2 of 2)	exon (NM_001013758, exon 2 of 2)	7113.0	NR_035503	100316778.0		NR_035503	ENSMUSG00000087993	Mir1982	mir-1982|mmu-mir-1982	microRNA 1982	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21452768-2	chr9	21452668	21452868	+	583.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357721, intron 1 of 19)	intron (NM_001357721, intron 1 of 19)	27860.0	NM_001357719	13430.0	Mm.433257	NM_007871	ENSMUSG00000033335	Dnm2	Dyn2|Udnm|b2b2159Clo	dynamin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-13577386-2	chr2	13577286	13577486	+	803.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011701, intron 2 of 8)	intron (NM_011701, intron 2 of 8)	3075.0	NM_011701	22352.0	Mm.268000	NM_011701	ENSMUSG00000026728	Vim	-	vimentin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75464056-2	chr11	75464067	75464267	+	873.3095089999999	f1_balb.idr|f1_c57bl6.idr	TTS (NR_029739)	TTS (NR_029739)	451.0	NR_029739	387141.0		NR_029739	ENSMUSG00000065529	Mir22	Mirn22|mmu-mir-22	microRNA 22	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-121906612-4	chr14	121906498	121906698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026861, intron 2 of 8)	intron (NM_026861, intron 2 of 8)	9176.0	NM_182806	110168.0	Mm.37405	NM_182806	ENSMUSG00000050350	Gpr18	-	G protein-coupled receptor 18	protein-coding	5.00239645419367	4.50838007576724	4.5287040058713	5.28508047832813	5.26549175287694	5.11620392193453	4.05948739211586	4.47991178014512	-0.0717633456857886	0.853157974453234	0.998431161219273
Merged-chr12-41342742-2	chr12	41342642	41342842	+	608.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_053122, intron 4 of 6)	intron (NM_053122, intron 4 of 6)	143315.0	NM_001271708	16981.0	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64220836-2	chr5	64220736	64220936	+	611.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019636, intron 2 of 19)	intron (NM_019636, intron 2 of 19)	-9521.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-152333955-1	chr3	152333855	152334055	+	645.0	f0_balb.idr	intron (NM_001162375, intron 3 of 13)	intron (NM_001162375, intron 3 of 13)	6452.0	NM_174868	215708.0	Mm.135018	NM_174868	ENSMUSG00000054942	Miga1	A930038D06|AI852168|C030011O14Rik|Fam73a|Mita1	mitoguardin 1	protein-coding	1.20731693883803	1.91835865272619	1.0444782027742	1.64167994752511	2.03654058308109	2.94998376800571	1.52827505633533	1.65088540219447	1.81710146302006	0.0947558178893388	0.476479590543289
Merged-chr1-43444944-1	chr1	43444844	43445044	+	595.0	f0_balb.idr	promoter-TSS (NM_010879)	promoter-TSS (NM_010879)	-807.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-53296781-2	chr11	53296681	53296881	+	824.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008300, intron 1 of 18)	B1_Mus2|SINE|Alu	3698.0	NM_008300	15525.0	Mm.239865	NM_008300	ENSMUSG00000020361	Hspa4	70kDa|AI317151|APG-2|Hsp110|Hsp70RY|mKIAA4025	heat shock protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-136161589-1	chr4	136161489	136161689	+	549.0	f1_balb.idr	Intergenic	Intergenic	-10685.0	NM_177733	242705.0	Mm.307932	NM_177733	ENSMUSG00000018983	E2f2	E2F-2	E2F transcription factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-10554427-4	chr10	10554320	10554520	+	974.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026405, intron 1 of 2)	intron (NM_026405, intron 1 of 2)	3787.0	NM_026405	67844.0	Mm.31486	NM_026405	ENSMUSG00000019832	Rab32	2810011A17Rik|AU022057	RAB32, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-51477772-6	chr1	51477628	51477828	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310549, intron 1 of 5)	intron (NM_001310549, intron 1 of 5)	671.0	NM_001310548	109019.0	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	2.65112458968	2.79467335277242	3.10691257569748	1.34470297359499	2.75021447271906	1.94866963198631	2.81482506339218	1.6110007793089	-0.475241935639478	0.606415042702777	0.974576632476413
Merged-chr3-83876514-2	chr3	83876414	83876614	+	765.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34906.0	NM_011905	24088.0	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131389074-2	chr1	131388974	131389174	+	724.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081011, intron 4 of 22)	intron (NM_001081011, intron 4 of 22)	-109511.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-46184909-4	chr18	46184858	46185058	+	993.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178872, intron 4 of 9)	MTD|LTR|ERVL-MaLR	13860.0	NM_001170855	28105.0	Mm.277382	NM_178872	ENSMUSG00000033949	Trim36	D18Wsu100e|haprin	tripartite motif-containing 36	protein-coding	1.34390927322266	2.59268840286465	2.15132484006876	1.97910713344918	2.2320509385828	1.02902263348153	1.00288439845896	0.979701879191946	-1.67806538949133	0.173441766624256	0.640902961210202
Merged-chr3-126610104-4	chr3	126610012	126610212	+	992.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025438, intron 2 of 18)	intron (NM_001025438, intron 2 of 18)	13161.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-36782200-4	chr15	36782100	36782300	+	891.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356569, intron 3 of 6)	PB1D11|SINE|Alu	8732.0	NM_001253807	22631.0	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-78044856-3	chr11	78044737	78044937	+	760.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001284228, intron 1 of 11)	intron (NM_001284228, intron 1 of 11)	4530.0	NM_001284228	14252.0	Mm.130227	NM_008028	ENSMUSG00000061981	Flot2	AI573412|Esa|reggie-2	flotillin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-79259026-4	chr11	79258936	79259136	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-4341.0	NM_019653	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-24800083-4	chr13	24799977	24800177	+	967.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1580.0	NM_024473	79555.0	Mm.266668	NM_024473	ENSMUSG00000019132	BC005537	8030460C05Rik|C78201	cDNA sequence BC005537	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-155560879-2	chr4	155560779	155560979	+	908.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1502.0	NM_138671	192185.0	Mm.28347	NM_138671	ENSMUSG00000029063	Nadk	4432404C02Rik|BC004012	NAD kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-14134123-3	chr10	14134023	14134223	+	650.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358782, intron 6 of 9)	intron (NM_001358782, intron 6 of 9)	167744.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	-0.639407882140876	-0.407694121478767	-0.630008379575283	-0.633526001232438	-0.638529517179302	-0.624459774535509	-0.629006255743376	0.332715839643528	2.70138071639885	0.324425215127464	1
Merged-chr2-9952428-2	chr2	9952328	9952528	+	760.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_027748, exon 3 of 7)	exon (NM_027748, exon 3 of 7)	46279.0	NR_152218	100126244.0	Mm.86343	NR_152218		Gm13262	-	predicted gene 13262	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46524343-4	chr19	46524235	46524435	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22687.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-64824688-1	chr15	64824588	64824788	+	542.0	f1_c57bl6.idr	intron (NM_009623, intron 2 of 17)	intron (NM_009623, intron 2 of 17)	97608.0	NM_001331075	11514.0	Mm.1425	NM_009623	ENSMUSG00000022376	Adcy8	AC8|AW060868	adenylate cyclase 8	protein-coding	-0.160814059131565	0.887524319113791	-0.146079638726261	-0.151573249409543	-0.159429571465173	-0.137460956113357	-0.144518877696546	0.583161646888243	-0.755082437031657	0.752136907476099	1
Merged-chr17-35219764-4	chr17	35219689	35219889	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010909)	TTS (NM_010909)	-14438.0	NM_010735	16992.0	Mm.87787	NM_010735	ENSMUSG00000024402	Lta	LT|LT-[a]|LT-alpha|LT[a]|LTalpha|Ltx|TNF-beta|TNFSF1|Tnfb|Tnfsf1b|Tnlg1e|hlb382	lymphotoxin A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-61704997-2	chr9	61704897	61705097	+	562.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	209513.0	NM_018853	56040.0	Mm.3158	NM_018853	ENSMUSG00000007892	Rplp1	2410042H16Rik|Arpp1|C430017H15Rik	ribosomal protein, large, P1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-53119972-1	chr13	53119872	53120072	+	613.0	f1_balb.idr	intron (NM_013846, intron 5 of 8)	intron (NM_013846, intron 5 of 8)	-138933.0	NM_017373	18030.0	Mm.136604	NM_017373	ENSMUSG00000056749	Nfil3	AV225605|E4BP4	nuclear factor, interleukin 3, regulated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-36684314-3	chr15	36684221	36684421	+	794.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	T-rich|Low_complexity|Low_complexity	-75348.0	NM_008774	18458.0	Mm.371570	NM_008774	ENSMUSG00000022283	Pabpc1	PABP|Pabp1|PabpI|Pabpl1|ePAB	poly(A) binding protein, cytoplasmic 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3812691-4	chr4	3812578	3812778	+	940.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	22977.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	4.38006010194053	3.96814052922669	3.83548186937826	4.33056548725714	3.8337164907744	4.75555724943584	3.78474597214679	4.44392925395903	0.141906158205089	0.748573107563495	0.998431161219273
Merged-chr1-171762230-1	chr1	171762130	171762330	+	626.0	f0_balb.idr	Intergenic	Intergenic	-4902.0	NM_013730	27218.0	Mm.103648	NM_013730	ENSMUSG00000015316	Slamf1	4933415F16|AA177906|CD150|CDw150|ESTM51|IPO-3|Slam	signaling lymphocytic activation molecule family member 1	protein-coding	0.632717151216001	0.720077097794239	0.693050908367208	0.671200512548171	1.09933636754733	2.79099606200661	1.73221966336259	2.09245036405281	5.59553903758513	0.000101047743352565	0.00310856358965891
Merged-chr17-44103961-4	chr17	44103882	44104082	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357996, intron 1 of 3)	intron (NM_001357996, intron 1 of 3)	1826.0	NM_199016	224794.0	Mm.255971	NM_199016	ENSMUSG00000023961	Enpp4	4933413N07Rik|AA986363|AI195364|E-NPP 4|Gm90	ectonucleotide pyrophosphatase/phosphodiesterase 4	protein-coding	4.97584400130646	3.91727670648343	5.26909222325267	3.50507740755531	4.11275609402932	2.89333762911367	3.96444443906277	3.22307685464163	-1.27028868712806	0.0184710438448477	0.169950601265707
Merged-chr7-28171342-2	chr7	28171242	28171442	+	714.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007991, intron 1 of 8)	intron (NM_007991, intron 1 of 8)	1594.0	NM_007991	14113.0	Mm.4595	NM_007991	ENSMUSG00000046865	Fbl	AL022665|FIB|FLRN|RNU3IP1	fibrillarin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-65582245-4	chr18	65582137	65582337	+	874.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361053)	promoter-TSS (NM_001361053)	-181.0	NM_001361053	328977.0	Mm.286232	NM_207255	ENSMUSG00000042439	Zfp532	C530030I18Rik|Znf532|mKIAA1629	zinc finger protein 532	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-60251495-4	chr14	60251404	60251604	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_170591)	promoter-TSS (NM_170591)	-25.0	NM_001362439	71844.0	Mm.258051	NM_170591	ENSMUSG00000114797	Nupl1	1700017F11Rik|Nup58|mKIAA0410	nucleoporin like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-121264067-1	chr10	121263967	121264167	+	997.5	f0_balb.idr	3' UTR (NM_029057, exon 12 of 12)	3' UTR (NM_029057, exon 12 of 12)	47329.0	NM_029057	74694.0	Mm.233833	NM_029057	ENSMUSG00000052302	Tbc1d30	4930505D03Rik|9530013E20Rik	TBC1 domain family, member 30	protein-coding	2.32937118220325	1.14211816570848	1.7191378865562	2.03986619726478	1.94681551510522	2.40272640492295	1.56481574943167	1.10193757031236	-0.0998045811264929	0.93000446187519	0.998431161219273
Merged-chr19-42166357-3	chr19	42166246	42166446	+	902.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4221.0	NM_177319	319740.0	Mm.287359	NM_177319	ENSMUSG00000018820	Zfyve27	2210011N02Rik|9530077C24Rik|AI426636|AI593546|AI835681	zinc finger, FYVE domain containing 27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3712664-4	chr4	3712563	3712763	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 1 of 12)	intron (NM_001111096, intron 1 of 12)	-2301.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-157099644-3	chr2	157099526	157099726	+	673.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018851, intron 15 of 15)	intron (NM_018851, intron 15 of 15)	12571.0	NM_001177439	383766.0	Mm.480305	NM_001177439	ENSMUSG00000074628	Tldc2	Gm1332	TBC/LysM associated domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-108991622-3	chr12	108991530	108991730	+	669.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177602, intron 3 of 6)	intron (NM_177602, intron 3 of 6)	76587.0	NM_001163175	380785.0	Mm.342085	NM_001163175	ENSMUSG00000040867	Begain	BM948371|Gm897	brain-enriched guanylate kinase-associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-131838298-4	chr4	131838180	131838380	+	996.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011214)	promoter-TSS (NM_011214)	-2.0	NM_001083119	19273.0	Mm.4860	NM_011214	ENSMUSG00000028909	Ptpru	Ftp-1|PCP-2|PTP|PTP-lambda|PTPlambda|Pcp2|Ptpf|Ptprl|R-PTP-U|R-PTP-psi|RPTPlambda	protein tyrosine phosphatase, receptor type, U	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-60679102-2	chr13	60679002	60679202	+	612.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	76891.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-11556949-3	chr8	11556924	11557124	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011919, exon 1 of 2)	exon (NM_011919, exon 1 of 2)	567.0	NM_011919	26356.0	Mm.25709	NM_011919	ENSMUSG00000045969	Ing1	2610028J21Rik|AA407184|AI875420|mING1h|p33Ing1|p37Ing1b	inhibitor of growth family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-52784147-4	chr2	52784037	52784237	+	884.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41988.0	NM_019667	56324.0	Mm.263639	NM_019667	ENSMUSG00000055371	Stam2	1200004O12Rik|5730456G07Rik|BB145015|Hbp	signal transducing adaptor molecule (SH3 domain and ITAM motif) 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-96765386-2	chr11	96765286	96765486	+	698.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12169.0	NM_028965	74479.0	Mm.270781	NM_028965	ENSMUSG00000020876	Snx11	4933439F10Rik|A930041K09Rik|AI117694	sorting nexin 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-147518347-2	chr4	147518247	147518447	+	774.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34930.0	NM_001014397	433804.0	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154	zinc finger protein 985	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-60973656-4	chr8	60973559	60973759	+	822.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007711, intron 1 of 11)	MTC|LTR|ERVL-MaLR	9652.0	NM_173873	12725.0	Mm.25263	NM_007711	ENSMUSG00000004319	Clcn3	Clc3	chloride channel, voltage-sensitive 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-88563281-2	chr1	88563181	88563381	+	579.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11764.0	NR_037971	100503197.0	Mm.99352	NR_037971	ENSMUSG00000100798	Gm19589	-	predicted gene, 19589	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-4451433-2	chr11	4451333	4451533	+	610.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10351.0	NM_029458	75828.0	Mm.159592	NM_029458	ENSMUSG00000020419	Hormad2	4930529M09Rik	HORMA domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-49855015-2	chr16	49854915	49855115	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010581)	promoter-TSS (NM_010581)	-639.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-48035075-1	chr4	48034975	48035175	+	544.0	f1_balb.idr	Intergenic	L1ME4b|LINE|L1	-10230.0	NM_015743	18124.0	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-96568498-4	chr15	96568400	96568600	+	967.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR37-int|LTR|ERV1	73462.0	NM_134086	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-45745616-2	chr17	45745516	45745716	+	660.666626	f1_balb.idr|f1_c57bl6.idr	intron (NR_152153, intron 1 of 4)	intron (NR_152153, intron 1 of 4)	11110.0	NR_152153	433111.0	Mm.213441	NR_152153	ENSMUSG00000097727	F630040K05Rik	-	RIKEN cDNA F630040K05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127091940-1	chr10	127091840	127092040	+	545.0	f1_c57bl6.idr	3' UTR (NM_001301014, exon 18 of 18)	3' UTR (NM_001301014, exon 18 of 18)	13033.0	NM_001033263	216439.0	Mm.336761	NM_001033263	ENSMUSG00000025422	Agap2	AGAP-2|Centg1|PIKE|cnt-g1|mKIAA0167	ArfGAP with GTPase domain, ankyrin repeat and PH domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-34611591-1	chr19	34611491	34611691	+	830.0	f0_c57.idr	exon (NM_001005858, exon 2 of 2)	exon (NM_001005858, exon 2 of 2)	3634.0	NM_001005858	667370.0	Mm.271850	NM_001005858	ENSMUSG00000062488	Ifit3b	I830012O16Rik	interferon-induced protein with tetratricopeptide repeats 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-102980657-4	chr14	102980534	102980734	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177715, exon 1 of 1)	3' UTR (NM_177715, exon 1 of 1)	1998.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-93722955-2	chr1	93722855	93723055	+	927.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025920, intron 3 of 5)	MTD|LTR|ERVL-MaLR	8971.0	NM_001310761	67026.0	Mm.272356	NM_025920	ENSMUSG00000026279	Thap4	2010320B01Rik	THAP domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180363217-2	chr1	180363117	180363317	+	862.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081175, intron 2 of 7)	intron (NM_001081175, intron 2 of 7)	-32668.0	NR_003623	277333.0	Mm.389223	NM_199472		Gm5069	EG277333	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-39065572-4	chr2	39065476	39065676	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029793)	promoter-TSS (NM_029793)	-35.0	NM_029793	76899.0	Mm.131098	NM_029793	ENSMUSG00000026754	Golga1	0710001G09Rik|2210418B03Rik|AW107649|Golgi97|awag|golgin-97	golgi autoantigen, golgin subfamily a, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-120520834-2	chr5	120520734	120520934	+	669.333374	f1_balb.idr|f1_c57bl6.idr	exon (NM_133221, exon 6 of 16)	exon (NM_133221, exon 6 of 16)	9642.0	NM_001177594	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-63803237-4	chr9	63803134	63803334	+	976.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45240.0	NM_016769	17127.0	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-152928802-3	chr3	152928692	152928892	+	937.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012028, intron 2 of 4)	intron (NM_012028, intron 2 of 4)	53415.0	NM_012028	26938.0	Mm.40915	NM_012028	ENSMUSG00000039037	St6galnac5	AI851940|Siat7e	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	protein-coding	2.86472391091235	1.46309252294235	1.96274949596576	2.80097536076719	1.81568276050723	1.47331160770213	1.16246237809716	1.91411419034988	-1.95425342813559	0.0580320409917218	0.356207967075077
Merged-chr18-62156615-2	chr18	62156515	62156715	+	700.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23366.0	NM_007420	11555.0	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83645391-2	chr6	83645240	83645440	+	653.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_016751, exon 7 of 7)	exon (NM_016751, exon 7 of 7)	10776.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	-0.986117776978398	-1.33156256825259	-1.34133402424827	-1.34936058913999	-1.21427833167172	-1.32944505297573	-1.33912198079506	-1.34792383786197	-0.98711403806483	0.775821656509867	1
Merged-chr13-79054658-2	chr13	79054558	79054758	+	816.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-855785.0	NM_010151	13865.0	Mm.439653	NM_010151	ENSMUSG00000069171	Nr2f1	COUP-TF1|COUP-TFI|COUPTFA|EAR-3|EAR3|Erbal3|SVP44|Tcfcoup1	nuclear receptor subfamily 2, group F, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-8992793-2	chr15	8992693	8992893	+	605.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198024, intron 1 of 13)	intron (NM_198024, intron 1 of 13)	24844.0	NM_198024	223332.0	Mm.321371	NM_198024	ENSMUSG00000048424	Ranbp3l	C130037N17Rik	RAN binding protein 3-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111417587-4	chr12	111417490	111417690	+	956.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_028807, exon 1 of 13)	5' UTR (NM_028807, exon 1 of 13)	145.0	NM_001289488	74190.0	Mm.248640	NM_028807	ENSMUSG00000021280	Exoc3l4	1200009I06Rik|1600013K19Rik	exocyst complex component 3-like 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-94388102-2	chr11	94388002	94388202	+	722.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_029600, intron 1 of 30)	intron (NM_029600, intron 1 of 30)	4874.0	NM_029600	76408.0	Mm.23942	NM_029600	ENSMUSG00000020865	Abcc3	1700019L09Rik|ABC31|MLP2|MOAT-D|MRP3	ATP-binding cassette, sub-family C (CFTR/MRP), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6982684-2	chr19	6982584	6982784	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001185164, exon 7 of 7)	3' UTR (NM_001185164, exon 7 of 7)	-2220.0	NM_001166368	14227.0	Mm.4234	NM_008020	ENSMUSG00000056629	Fkbp2	mFKBP13|mFKBP2	FK506 binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-88954966-4	chr11	88954869	88955069	+	980.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029023, intron 1 of 12)	intron (NM_029023, intron 1 of 12)	473.0	NM_029023	74617.0	Mm.34126	NM_029023	ENSMUSG00000000278	Scpep1	2410018F01Rik|4833411K15Rik|AI957256|Risc	serine carboxypeptidase 1	protein-coding	4.77960729378918	4.12578952074514	3.43465340333429	4.51007550322854	4.64785242375093	5.13892042122161	4.70933321140004	4.95976397362604	0.69985493099287	0.0805547797505487	0.432501304048516
Merged-chr12-85596091-4	chr12	85595999	85596199	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3006.0	NM_001205052	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-117905482-4	chr6	117905385	117905585	+	858.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166432, intron 1 of 3)	intron (NM_001166432, intron 1 of 3)	-1297.0	NM_001166430	98758.0	Mm.422979	NM_133834	ENSMUSG00000042079	Hnrnpf	4833420I20Rik|AA407306|Hnrpf	heterogeneous nuclear ribonucleoprotein F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-145245428-3	chr6	145245336	145245536	+	898.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021284, intron 2 of 4)	(CAAA)n|Simple_repeat|Simple_repeat	4795.0	NM_021284	16653.0	Mm.383182	NM_021284	ENSMUSG00000030265	Kras	AI929937|K-Ras|K-Ras 2|K-ras|Ki-ras|Kras-2|Kras2|c-K-ras|c-Ki-ras|p21B|ras	Kirsten rat sarcoma viral oncogene homolog	protein-coding	1.90748297132468	1.683589013655	1.0913321042095	1.71096031125593	1.74329517931341	1.34476205421426	1.6412975756881	2.0245908057466	0.245250833169958	0.826174029460589	0.998431161219273
Merged-chr5-52423655-2	chr5	52423555	52423755	+	698.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001256059, intron 3 of 11)	L2a|LINE|L2	-17504.0	NR_152197	100041805.0	Mm.417070	NR_152197		Gm3519	Gm43683	predicted gene 3519	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-11263162-4	chr19	11263082	11263282	+	797.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007641, intron 1 of 6)	intron (NM_007641, intron 1 of 6)	2969.0	NM_007641	12482.0	Mm.4046	NM_007641	ENSMUSG00000024673	Ms4a1	AA960661|Cd20|Ly-44|Ms4a2	membrane-spanning 4-domains, subfamily A, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-50185911-3	chr17	50185852	50186052	+	822.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181397, intron 1 of 9)	intron (NM_181397, intron 1 of 9)	4545.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-82909476-4	chr6	82909341	82909541	+	894.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-27588.0	NR_040520	69652.0	Mm.96357	NR_040520	ENSMUSG00000100291	2310069B03Rik	-	RIKEN cDNA 2310069B03 gene	ncRNA	0.696947811276392	0.745063588593644	0.729704642086778	1.49256160327202	1.30668111237572	0.992209111342125	1.44033898498358	2.00844510899923	2.02074865429152	0.164298186981105	0.627932209944809
Merged-chr11-3168096-1	chr11	3167996	3168196	+	1000.0	f1_balb.idr	intron (NM_030207, intron 7 of 32)	RLTR21|LTR|ERVK	25367.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-105825836-4	chr3	105825722	105825922	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10255.0	NR_045845	433637.0	Mm.331285	NR_045845	ENSMUSG00000104835	Gm5547	EG433637	predicted gene 5547	ncRNA	6.08273593723626	6.41522331021253	6.52975843894962	6.55138310449278	5.56694153660854	5.81968498859876	5.76109700882479	6.31289446097418	-0.557932077259551	0.019762733091825	0.178102106887118
Merged-chr1-20466545-3	chr1	20466422	20466622	+	620.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153179, intron 35 of 66)	intron (NM_153179, intron 35 of 66)	110068.0	NR_045734	75028.0	Mm.417820	NR_045734	ENSMUSG00000089914	4930486I03Rik	-	RIKEN cDNA 4930486I03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-98816238-4	chr7	98816144	98816344	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	C-rich|Low_complexity|Low_complexity	-18868.0	NM_001285794	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-32862588-2	chr5	32862488	32862688	+	963.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR42-int|LTR|ERVK	-1133.0	NM_177786	277854.0	Mm.101524	NM_177786	ENSMUSG00000037426	Depdc5	AV016528	DEP domain containing 5	protein-coding	0.429642541290896	1.25499263246988	0.450205376274583	0.442537987448865	0.599742779853843	1.26859161050312	0.656505231669179	1.04714716699701	1.04835259002972	0.53327642032013	1
Merged-chr1-72415787-4	chr1	72415686	72415886	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	108365.0	NM_001357519	22596.0	Mm.246952	NM_009533	ENSMUSG00000026187	Xrcc5	AI314015|CTC85|CTCBF|Ku80|Ku86	X-ray repair complementing defective repair in Chinese hamster cells 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-59659927-4	chr9	59659819	59660019	+	959.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253883, intron 1 of 10)	intron (NM_001253883, intron 1 of 10)	3551.0	NM_011099	18746.0	Mm.326167	NM_011099	ENSMUSG00000032294	Pkm	AA414905|AL024370|AL024424|Pk-2|Pk-3|Pk3|Pkm2	pyruvate kinase, muscle	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-75211579-1	chr8	75211479	75211679	+	891.0	f1_c57bl6.idr	Intergenic	Intergenic	-2365.0	NM_029182	75141.0	Mm.179267	NM_029182	ENSMUSG00000034472	Rasd2	4930526B11Rik|AU045414|Rhes|TEM-2|TEM2	RASD family, member 2	protein-coding	-1.56355737717652	-1.81244775989375	-1.82128546162293	-1.82854501295842	-1.83962066705452	-1.81053259306168	-1.81928479966835	-1.82724555674025	-1.28500227969968	0.715751224811686	1
Merged-chr7-66386591-1	chr7	66386491	66386691	+	554.0	f1_balb.idr	intron (NM_146191, intron 1 of 33)	Lx7|LINE|L1	1750.0	NM_146191	233328.0	Mm.33284	NM_146191	ENSMUSG00000015133	Lrrk1	AW319595|C230002E15Rik|D130026O16Rik|mKIAA1790	leucine-rich repeat kinase 1	protein-coding	2.14763866968204	2.71759208529771	1.5536840863486	2.02360087368233	2.16573238829626	2.01324841014744	1.56415413112741	2.85468090431392	0.155621140572146	0.868238368706522	0.998431161219273
Merged-chr16-31756612-3	chr16	31756511	31756711	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252436, intron 1 of 22)	intron (NM_001252436, intron 1 of 22)	2261.0	NM_001252436	13383.0	Mm.382	NM_007862	ENSMUSG00000022770	Dlg1	B130052P05Rik|Dlgh1|E-dlg/SAP97|SAP-97|SAP97|mKIAA4187	discs large MAGUK scaffold protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41983672-2	chr19	41983572	41983772	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145500, intron 1 of 2)	intron (NM_145500, intron 1 of 2)	1909.0	NM_145500	226122.0	Mm.22948	NM_145500	ENSMUSG00000025171	Ubtd1	BC016129	ubiquitin domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-110527881-4	chr9	110527780	110527980	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4717.0	NM_001081340	235626.0	Mm.288949	NM_001081340	ENSMUSG00000044791	Setd2	4921524K10Rik|BC031601|KMT3A	SET domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118850833-2	chr9	118850686	118850886	+	855.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_133721, exon 23 of 28)	exon (NM_133721, exon 23 of 28)	-75750.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	0.609029395626582	1.30099568070598	0.63073181131285	1.08686328284905	1.13891385774539	1.31321470272101	1.13518606836941	0.624051617650891	0.604324786681187	0.698749068054069	0.998284579433352
Merged-chr10-60733921-4	chr10	60733801	60734001	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023596, intron 2 of 5)	intron (NM_023596, intron 2 of 5)	18881.0	NM_023596	71279.0	Mm.284462	NM_023596	ENSMUSG00000020100	Slc29a3	4933435C21Rik|AW987637|Ent3	solute carrier family 29 (nucleoside transporters), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-99645604-2	chr12	99645504	99645704	+	650.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	-17630.0	NR_045288	73457.0	Mm.383439	NR_045288	ENSMUSG00000100211	1700064M15Rik	-	RIKEN cDNA 1700064M15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126762725-2	chr7	126762625	126762825	+	615.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011952, intron 2 of 8)	MIR|SINE|MIR	3099.0	NM_011952	26417.0	Mm.8385	NM_011952	ENSMUSG00000063065	Mapk3	Erk-1|Erk1|Ert2|Esrk1|Mnk1|Mtap2k|Prkm3|p44|p44erk1|p44mapk	mitogen-activated protein kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-10974075-1	chr16	10973975	10974175	+	543.0	f1_balb.idr	intron (NM_019980, intron 1 of 3)	intron (NM_019980, intron 1 of 3)	19046.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-145286934-4	chr4	145286840	145287040	+	998.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009401, intron 8 of 12)	intron (NM_009401, intron 8 of 12)	28207.0	NM_009401	21941.0	Mm.12810	NM_009401	ENSMUSG00000028602	Tnfrsf8	Cd30|D1S166E|Ki|Ki-1	tumor necrosis factor receptor superfamily, member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-3658652-2	chr2	3658552	3658752	+	801.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54806.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-45031931-4	chr13	45031835	45032035	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29839.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-74305406-4	chr4	74305277	74305477	+	822.62915	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356561, intron 4 of 20)	B1_Mus1|SINE|Alu	53498.0	NM_001356561	76804.0	Mm.209059	NM_144787	ENSMUSG00000028397	Kdm4c	2410141F18Rik|AA517467|Gasc1|Jmjd2c	lysine (K)-specific demethylase 4C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-99376922-2	chr9	99376821	99377021	+	947.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-18391.0	NM_177775	272636.0	Mm.490440	NM_177775	ENSMUSG00000037681	Esyt3	D930024E11|D9Ertd280e|Fam62c|mKIAA4186	extended synaptotagmin-like protein 3	protein-coding	1.07129789717745	1.78599503807374	1.91905858189344	1.28390168055817	1.5877692354217	1.67684696781218	0.929716711997238	1.1201032605124	-0.670881110882412	0.586331098368999	0.967794420281743
Merged-chr4-48473463-4	chr4	48473359	48473559	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355741)	promoter-TSS (NM_001355741)	4.0	NM_172304	269536.0	Mm.272025	NM_172304	ENSMUSG00000028345	Tex10	2610206N19Rik|2810462N03Rik|BC006867	testis expressed gene 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-24594608-2	chr7	24594508	24594708	+	967.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023154, intron 3 of 7)	intron (NM_023154, intron 3 of 7)	-6967.0	NM_001033205	101544.0	Mm.20117	NM_001033205	ENSMUSG00000066721	Zfp575	AI326876|Znf575	zinc finger protein 575	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-62691367-3	chr1	62691267	62691467	+	676.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-11950.0	NM_001077406	18187.0	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-32249778-4	chr1	32249664	32249864	+	841.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133235, intron 2 of 8)	Lx6|LINE|L1	77042.0	NM_133235	170771.0	Mm.336594	NM_133235	ENSMUSG00000026058	Khdrbs2	6330586C16Rik|Slim1|Slm-1|Slm1|TG-RP135|Tg(LRRK2*R1441G)135Cjli|mSLM-1	KH domain containing, RNA binding, signal transduction associated 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-139289071-5	chr4	139289019	139289219	+	878.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037761, intron 9 of 9)	intron (NM_001037761, intron 9 of 9)	21589.0	NR_151463	212555.0	Mm.45131	NM_145384	ENSMUSG00000028744	Pqlc2	BC019216	PQ loop repeat containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-41445309-1	chr9	41445209	41445409	+	888.0	f0_balb.idr	intron (NR_131928, intron 3 of 4)	intron (NR_131928, intron 3 of 4)	-29584.0	NR_131931	73144.0	Mm.38166	NM_001033153	ENSMUSG00000074415	3110039I08Rik	2610203C20Rik|AI848448|D230004N17Rik|D3Mgi9|Mir100hg	RIKEN cDNA 3110039I08 gene	ncRNA	0.570330827328801	0.64103187630867	0.618095791634848	0.438173817741103	0.808783046734572	0.646177383868107	1.11808381825484	0.86417266577679	2.00965229278739	0.207932655433053	1
Merged-chr7-44349122-2	chr7	44349038	44349238	+	663.958374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001034115, intron 22 of 24)	intron (NM_001034115, intron 22 of 24)	25892.0	NM_027049	69349.0	Mm.358922	NM_027049	ENSMUSG00000008028	1700008O03Rik	-	RIKEN cDNA 1700008O03 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85740588-2	chr12	85740488	85740688	+	674.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5951.0	NM_145447	217721.0	Mm.301076	NM_145447	ENSMUSG00000034258	Flvcr2	CCT|Mfsd7c	feline leukemia virus subgroup C cellular receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-88346110-4	chr10	88345990	88346190	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027878, intron 1 of 6)	intron (NM_027878, intron 1 of 6)	10985.0	NM_027878	71712.0	Mm.35450	NM_027878	ENSMUSG00000020057	Dram1	1200002N14Rik|Dram	DNA-damage regulated autophagy modulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-42859431-2	chr16	42859331	42859531	+	687.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_040522, intron 1 of 1)	MTD|LTR|ERVL-MaLR	16156.0	NR_040521	75722.0	Mm.243747	NR_040521	ENSMUSG00000075070	4932412D23Rik	Gm10809	RIKEN cDNA 4932412D23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-34130022-2	chr13	34129922	34130122	+	753.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023716, intron 1 of 3)	intron (NM_023716, intron 1 of 3)	332.0	NM_023716	73710.0	Mm.379227	NM_023716	ENSMUSG00000045136	Tubb2b	2410129E14Rik|brdp	tubulin, beta 2B class IIB	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-101938345-4	chr5	101938248	101938448	+	816.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 13 of 66)	B3|SINE|B2	131573.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-105268891-4	chr4	105268798	105268998	+	948.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	111551.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-128515708-2	chr8	128515608	128515808	+	893.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	156467.0	NR_035436	100316680.0		NR_035436	ENSMUSG00000084523	Mir1903	Mirn1903|mmu-mir-1903	microRNA 1903	ncRNA	-2.18138529563533	-2.15523716995652	-2.1631445789866	-2.16963996020037	-2.05513010215571	-2.15352360143315	-2.16135451490766	-2.16847729006863	0.759018020146679	0.829933115115583	1
Merged-chr3-65956617-3	chr3	65956512	65956712	+	876.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355433, intron 3 of 11)	intron (NM_001355433, intron 3 of 11)	1637.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-104235793-2	chr9	104235693	104235893	+	834.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359740, intron 5 of 56)	intron (NM_001359740, intron 5 of 56)	27137.0	NM_001359740	235567.0	Mm.217256	NM_001163026	ENSMUSG00000032560	Dnajc13	D030002L11Rik|Gm1124|RME-8|Rme8|mKIAA0678	DnaJ heat shock protein family (Hsp40) member C13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118687849-2	chr9	118687749	118687949	+	642.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 13 of 27)	MTEa|LTR|ERVL-MaLR	-23843.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	-0.159575428902353	-0.610187827292597	-0.613553296959403	-0.616142918686652	-0.062413005932852	-0.609427817933545	-0.612811884975486	-0.615690957529907	0.356090971337642	0.902258025932581	1
Merged-chr14-118982867-1	chr14	118982767	118982967	+	678.0	f1_c57bl6.idr	Intergenic	Intergenic	44935.0	NM_008929	100037258.0	Mm.12616	NM_008929	ENSMUSG00000022136	Dnajc3	AA408985|AU067833|Dnajc3a|Dnajc3b|Prkri|mp58|p58|p58IPK	DnaJ heat shock protein family (Hsp40) member C3	protein-coding	3.03916404870815	3.41949235442704	2.96317841528554	3.94267552072863	1.29937712925731	2.60507376420868	2.64779622954027	1.37668890315756	-2.34904894105623	0.00426586840329112	0.0591014885712319
Merged-chr5-62753382-2	chr5	62753282	62753482	+	557.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178407, intron 1 of 32)	intron (NM_178407, intron 1 of 32)	12795.0	NM_178407	212285.0	Mm.244403	NM_178407	ENSMUSG00000037999	Arap2	Centd1|Gm148|mKIAA0580	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-87702856-2	chr16	87702756	87702956	+	610.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007520, intron 1 of 4)	intron (NM_007520, intron 1 of 4)	3902.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	-2.18138529563533	-2.15523716995652	-2.1631445789866	-2.16963996020037	-2.05513010215571	-2.15352360143315	-2.16135451490766	-2.16847729006863	0.759018020146679	0.829933115115583	1
Merged-chr1-21217562-2	chr1	21217462	21217662	+	976.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1013.0	NM_001290679	75712.0	Mm.304763	NM_029398	ENSMUSG00000025933	Tmem14a	5730496E24Rik|C85783|PTD011	transmembrane protein 14A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-96890746-2	chr11	96890657	96890857	+	919.583374	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA7|LINE|L1	25757.0	NM_001308183	80280.0	Mm.28297	NM_030248	ENSMUSG00000018669	Cdk5rap3	1810007E24Rik|BC002318|C53|C81486|HSF-27|IC53|LZAP|MST016	CDK5 regulatory subunit associated protein 3	protein-coding	0.628563688632394	1.3550827514091	1.88885353071403	0.655037843925608	0.632589709030935	1.3679744343409	2.15275465056637	0.657746776376979	0.383093605315595	0.804021140715373	0.998431161219273
Merged-chr7-74685578-1	chr7	74685478	74685678	+	756.0	f1_c57bl6.idr	Intergenic	Intergenic	-130798.0	NM_001038643	108116.0	Mm.425467	NM_023908	ENSMUSG00000025790	Slco3a1	5830414C08Rik|Anr1|MJAM|OATP-D|R75096|Slc21a11	solute carrier organic anion transporter family, member 3a1	protein-coding	-0.662826441749988	-1.00555184936033	-1.01675512286785	-1.01992432642343	-0.654846858003193	-1.00312405325568	-1.01421894731451	-1.01959449741028	0.0418081237259606	0.989738874530268	1
Merged-chr12-35067839-3	chr12	35067738	35067938	+	795.333374	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001014973, intron 1 of 25)	intron (NM_001014973, intron 1 of 25)	20649.0	NM_001014973	217463.0	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-19618185-2	chr15	19618082	19618282	+	674.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	432809.0	NR_155419	102639102.0	Mm.463245	NR_155419	ENSMUSG00000115803	Gm35496	-	predicted gene, 35496	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128337930-4	chr2	128337810	128338010	+	975.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028590, intron 1 of 2)	B4|SINE|B4	91441.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	2.55355290224473	2.58790584167527	3.09267081282457	3.0065856359112	3.25154213825732	2.436122413642	3.69625001147208	3.19241612324903	0.690352853508099	0.296144825081671	0.798938452555064
Merged-chr1-37998854-2	chr1	37998754	37998954	+	653.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198303, intron 1 of 23)	intron (NM_198303, intron 1 of 23)	844.0	NM_198303	226982.0	Mm.260943	NM_198303	ENSMUSG00000026083	Eif5b	A030003E17Rik|BC018347|IF2	eukaryotic translation initiation factor 5B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-3430694-4	chr5	3430607	3430807	+	993.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 4 of 7)	intron (NM_009873, intron 4 of 7)	86814.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-129362498-2	chr6	129362398	129362598	+	570.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177686, intron 5 of 5)	MLTR11A|LTR|ERVK	12254.0	NM_177686	232413.0	Mm.90241	NM_177686	ENSMUSG00000053063	Clec12a	CLL-1|D230024O04|KLRL1|Micl	C-type lectin domain family 12, member a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-34181823-4	chr15	34181717	34181917	+	961.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56209.0	NM_033521	114128.0	Mm.197518	NM_033521	ENSMUSG00000022257	Laptm4b	C330023P13Rik|LAPTM4beta	lysosomal-associated protein transmembrane 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126975860-2	chr8	126975760	126975960	+	587.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3578.0	NR_151744	629746.0	Mm.264954	NR_151744		Gm29688	-	predicted gene, 29688	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-96716097-3	chr9	96716029	96716229	+	845.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359959, intron 2 of 2)	intron (NM_001359959, intron 2 of 2)	3316.0	NM_001359960	245007.0	Mm.485954	NM_175537	ENSMUSG00000040433	Zbtb38	A930014K01Rik|CIBZ	zinc finger and BTB domain containing 38	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-80464154-2	chr12	80464054	80464254	+	880.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133798, intron 1 of 8)	B3A|SINE|B2	1059.0	NM_133798	97827.0	Mm.206631	NM_133798	ENSMUSG00000032705	Exd2	4930539P14Rik|C85658|Exdl2	exonuclease 3'-5' domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-28883336-2	chr19	28883236	28883436	+	889.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009199, intron 2 of 11)	intron (NM_009199, intron 2 of 11)	48170.0	NM_009199	20510.0	Mm.246670	NM_009199	ENSMUSG00000024935	Slc1a1	D130048G10Rik|EAAC1|EAAC2|EAAT3|MEAAC1	solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-25637937-4	chr15	25637816	25638016	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019472, intron 1 of 40)	intron (NM_019472, intron 1 of 40)	15366.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-92940984-3	chr6	92940881	92941081	+	951.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015530, intron 1 of 2)	intron (NR_015530, intron 1 of 2)	399.0	NR_015530	330385.0	Mm.483472	NR_015530	ENSMUSG00000097462	9530026P05Rik	B430306B02	RIKEN cDNA 9530026P05 gene	ncRNA	0.291608979563841	0.162745371150149	0.156197186539824	0.151129294408268	0.641631348951279	0.915138307411278	0.634898468709563	0.152015675384209	3.39403022447934	0.0887562378494427	1
Merged-chr8-70003266-4	chr8	70003170	70003370	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6886.0	NM_145596	234366.0	Mm.270044	NM_145596	ENSMUSG00000036180	Gatad2a	1110066C11Rik|BC031407|C80248	GATA zinc finger domain containing 2A	protein-coding	5.83009137481123	6.43504997614387	5.19375687891526	5.94954571195998	5.88626425257711	6.64680745049157	5.72277197991348	6.17148653542197	0.254400037674835	0.379320450808253	0.871744368943447
Merged-chr12-59219006-4	chr12	59218939	59219139	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001033156, exon 1 of 4)	exon (NM_001033156, exon 1 of 4)	444.0	NM_001033156	70611.0	Mm.311026	NM_001033156	ENSMUSG00000035329	Fbxo33	5730501N20Rik|AI642135	F-box protein 33	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102646764-4	chr12	102646656	102646856	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172584, intron 2 of 9)	MIR3|SINE|MIR	38264.0	NR_035457	100316812.0		NR_035457	ENSMUSG00000089324	Mir1936	mir-1936|mmu-mir-1936	microRNA 1936	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32505681-2	chr2	32505581	32505781	+	549.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-29678.0	NM_153560	98952.0	Mm.4065	NM_153560	ENSMUSG00000039157	Fam102a	AI426465|C230093N12Rik|Eeig1	family with sequence similarity 102, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-105482794-2	chr11	105482694	105482894	+	567.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26059.0	NM_001039242	632687.0	Mm.121570	NM_172568	ENSMUSG00000078627	March10	4933417C16Rik|AV039223|Rnf190	membrane-associated ring finger (C3HC4) 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-24641636-3	chr13	24641538	24641738	+	683.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080381, intron 1 of 14)	intron (NM_001080381, intron 1 of 14)	2990.0	NM_029679	193385.0	Mm.217319	NM_029679	ENSMUSG00000036006	Ripor2	Fam65b	RHO family interacting cell polarization regulator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-37127155-4	chr19	37126990	37127190	+	879.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290829, intron 3 of 9)	B1_Mur1|SINE|Alu	-46753.0	NR_045329	319931.0	Mm.446730	NR_045329	ENSMUSG00000097591	A330032B11Rik	-	RIKEN cDNA A330032B11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80940671-7	chr10	80940536	80940736	+	951.142883	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10545.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133346327-4	chr4	133346155	133346355	+	660.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6940.0	NM_199306	230796.0	Mm.226576	NM_199306	ENSMUSG00000037622	Wdtc1	Gm695|adipose|adp	WD and tetratricopeptide repeats 1	protein-coding	-0.752703249331578	-1.19327662759868	-1.20367200772054	-1.21221108246634	-1.07350664517746	-1.1910239053609	-1.2013187215212	-1.21068259216948	-1.39419391438984	0.678133685438574	1
Merged-chr11-31949580-4	chr11	31949497	31949697	+	769.012512	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16036.0	NM_026262	67592.0	Mm.78654	NM_026262	ENSMUSG00000020299	4930524B15Rik	-	RIKEN cDNA 4930524B15 gene	protein-coding	1.21117798944825	0.506333767303863	1.0771618759804	0.92677329012495	0.762464460879373	0.508153238663729	0.838959605864868	0.493084463790265	-1.71927818406197	0.301385440266065	1
Merged-chr1-92775500-3	chr1	92775397	92775597	+	798.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56148.0	NM_016696	14733.0	Mm.297976	NM_016696	ENSMUSG00000034220	Gpc1	AI462976	glypican 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128058055-4	chr2	128057964	128058164	+	980.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028765, intron 14 of 17)	intron (NM_028765, intron 14 of 17)	-67974.0	NM_207681	12125.0	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21036777-2	chr9	21036677	21036877	+	587.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008319, exon 8 of 11)	exon (NM_008319, exon 8 of 11)	-4449.0	NR_035438	100316681.0		NR_035438	ENSMUSG00000084663	Mir1900	Mirn1900|mmu-mir-1900	microRNA 1900	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30441235-4	chr2	30441126	30441326	+	993.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138748, intron 8 of 9)	intron (NM_138748, intron 8 of 9)	25176.0	NM_138748	110854.0	Mm.275393	NM_138748	ENSMUSG00000039515	Ptpa	2610042B21Rik|C77440|N28142|PR53|Ppp2r4	protein phosphatase 2 protein activator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-91509551-4	chr6	91509469	91509669	+	897.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009531, intron 2 of 15)	intron (NM_009531, intron 2 of 15)	6319.0	NM_009531	22591.0	Mm.2806	NM_009531	ENSMUSG00000030094	Xpc	-	xeroderma pigmentosum, complementation group C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-8680646-4	chr13	8680548	8680748	+	816.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110345, intron 4 of 10)	intron (NR_110345, intron 4 of 10)	190396.0	NM_001039389	207615.0	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117055321-4	chr8	117055240	117055440	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029686, intron 13 of 42)	MIR|SINE|MIR	27109.0	NM_029686	76645.0	Mm.159753	NM_029686	ENSMUSG00000034416	Pkd1l2	1700126L06Rik	polycystic kidney disease 1 like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-43339323-1	chr3	43339223	43339423	+	545.0	f1_c57bl6.idr	Intergenic	RMER17B|LTR|ERVK	1596705.0	NM_027271	73852.0	Mm.29006	NM_027271	ENSMUSG00000025766	D3Ertd751e	2810009O15Rik|4930415G15Rik	DNA segment, Chr 3, ERATO Doi 751, expressed	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-27186753-2	chr8	27186653	27186853	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12107.0	NM_001080813	75767.0	Mm.205335	NM_029423	ENSMUSG00000031488	Rab11fip1	2010200K21Rik|4833414G05Rik|Rcp	RAB11 family interacting protein 1 (class I)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-62880257-2	chr11	62880179	62880379	+	886.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356521, intron 1 of 6)	B1_Mus2|SINE|Alu	824.0	NM_026210	67510.0	Mm.9806	NM_026210	ENSMUSG00000014177	Tvp23b	1810036I24Rik|Fam18b|Fam18b1	trans-golgi network vesicle protein 23B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64210420-2	chr5	64210320	64210520	+	563.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019636, intron 2 of 19)	intron (NM_019636, intron 2 of 19)	-19937.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-83167663-2	chr15	83167563	83167763	+	577.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029787, intron 1 of 8)	intron (NM_029787, intron 1 of 8)	4545.0	NM_029787	109754.0	Mm.22560	NM_029787	ENSMUSG00000018042	Cyb5r3	0610016L08Rik|2500002N19Rik|C85115|Dia-1|Dia1|WU:AL591952.1-001|WU:AL591952.1-002|WU:AL591952.1-003|WU:Cyb5r3	cytochrome b5 reductase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-102032039-4	chr7	102031955	102032155	+	965.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029211, intron 4 of 8)	intron (NM_029211, intron 4 of 8)	-13900.0	NM_010531	16068.0	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-33194421-4	chr14	33194338	33194538	+	960.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9372.0	NM_001146022	545030.0	Mm.318345	NM_001146022	ENSMUSG00000051506	Wdfy4	Gm18810	WD repeat and FYVE domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-84315669-3	chr6	84315555	84315755	+	704.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	108183.0	NR_046063	100038556.0	Mm.387783	NR_046063	ENSMUSG00000107797	Gm10445	-	predicted gene 10445	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-49108158-3	chr13	49108021	49108221	+	602.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290313, intron 2 of 29)	intron (NM_001290313, intron 2 of 29)	40207.0	NM_029361	75607.0	Mm.342723	NM_029361	ENSMUSG00000037989	Wnk2	1810073P09Rik|AW122246|ESTM15|X83337|mKIAA1760	WNK lysine deficient protein kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-79592303-4	chr3	79592358	79592558	+	776.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356326, intron 1 of 10)	intron (NM_001356326, intron 1 of 10)	1121.0	NM_026352	67738.0	Mm.295252	NM_026352	ENSMUSG00000027804	Ppid	4930564J03Rik|CYP-40|Ppidl|Ppif	peptidylprolyl isomerase D (cyclophilin D)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-88435521-4	chr17	88435438	88435638	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5166.0	NM_001355743	14236.0	Mm.112824	NM_180974	ENSMUSG00000034998	Foxn2	3230402J05Rik|6030465J18Rik|Fkh19|Foxn1|HTLF	forkhead box N2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-37483681-3	chr17	37483554	37483754	+	963.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347387)	promoter-TSS (NM_001347387)	-100.0	NM_001347387	14990.0	Mm.329041	NM_008204	ENSMUSG00000016283	H2-M2	H-2M2|Thy19.4	histocompatibility 2, M region locus 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32150934-4	chr2	32150835	32151035	+	732.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159634)	promoter-TSS (NM_001159634)	-213.0	NM_172661	227723.0	Mm.25504	NM_172661	ENSMUSG00000039262	Prrc2b	5830434P21Rik|AI173903|Bat2l|Bat2l1|D430039P21|mKIAA0515	proline-rich coiled-coil 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119295829-2	chr11	119295762	119295962	+	604.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_138669, intron 3 of 11)	intron (NM_138669, intron 3 of 11)	4181.0	NM_138669	192170.0	Mm.197555	NM_138669	ENSMUSG00000025580	Eif4a3	2400003O03Rik|Ddx48|eIF4A-III|mKIAA0111	eukaryotic translation initiation factor 4A3	protein-coding	-0.289851946104314	-0.737899168765768	-0.740932179010924	-0.743264539078787	-0.280173431323445	-0.737213951634147	-0.740264187498491	-0.742857569821679	0.0418983010157508	0.98887086484455	1
Merged-chr9-99384305-1	chr9	99384205	99384405	+	767.0	f0_balb.idr	Intergenic	Intergenic	-25775.0	NM_177775	272636.0	Mm.490440	NM_177775	ENSMUSG00000037681	Esyt3	D930024E11|D9Ertd280e|Fam62c|mKIAA4186	extended synaptotagmin-like protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-121669228-2	chr8	121669128	121669328	+	724.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17295.0	NM_080855	142682.0	Mm.103202	NM_080855	ENSMUSG00000061410	Zcchc14	AA792890|BDG29	zinc finger, CCHC domain containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28375697-4	chr7	28375603	28375803	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	G-rich|Low_complexity|Low_complexity	-3041.0	NM_001083912	101497.0	Mm.235700	NM_138752	ENSMUSG00000037552	Plekhg2	AI194308|Clg|Cslg	pleckstrin homology domain containing, family G (with RhoGef domain) member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-62881942-2	chr17	62881842	62882042	+	637.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207654)	promoter-TSS (NM_207654)	-625.0	NM_010109	13640.0	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-40532424-2	chr3	40532324	40532524	+	631.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8343.0	NM_175515	380614.0	Mm.105309	NM_175515	ENSMUSG00000060798	Intu	9230116I04Rik|9430087H23Rik|Pdzd6|Pdzk6|mKIAA1284	inturned planar cell polarity protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-50269419-2	chr11	50269319	50269519	+	702.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_175334, intron 1 of 4)	B2_Mm2|SINE|B2	22917.0	NM_175334	103806.0	Mm.51116	NM_175334	ENSMUSG00000050567	Maml1	AI644666|AW743257|D930008C07Rik|Mam-1|Mam1|mKIAA0200	mastermind like transcriptional coactivator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-20728257-2	chr13	20728159	20728359	+	765.166626	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65854.0	NM_001281854	27052.0	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	1.85862395833911	1.35260613515799	2.34934019441242	1.26492851590283	0.830251714625163	1.69102810195254	0.873833754195014	1.08441801091218	-2.07349061517545	0.106457699652189	0.509282089484435
Merged-chr9-100376826-3	chr9	100376726	100376926	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	109647.0	NM_001033543	213208.0	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	2.45392802643005	1.5582063807227	2.39326520480021	2.59719206540135	3.98804384069939	2.92263084713638	2.82113635576995	3.46164945138537	1.95283705991923	0.00796494474232504	0.0927528768016682
Merged-chr2-144529067-2	chr2	144528967	144529167	+	684.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029763, intron 2 of 8)	MLT2B1|LTR|ERVL	1322.0	NM_029763	70408.0	Mm.389351	NM_029763	ENSMUSG00000027427	Polr3f	2810411G20Rik|3010019O03Rik|3110032A07Rik|RPC39|RPC6	polymerase (RNA) III (DNA directed) polypeptide F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-121987486-4	chr14	121987396	121987596	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026861, intron 6 of 8)	intron (NM_026861, intron 6 of 8)	-22303.0	NM_183031	321019.0	Mm.265618	NM_183031	ENSMUSG00000051212	Gpr183	Ebi2	G protein-coupled receptor 183	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6365812-2	chr19	6365712	6365912	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360393, intron 2 of 11)	intron (NM_001360393, intron 2 of 11)	2122.0	NR_122118	22668.0	Mm.256422	NM_011750	ENSMUSG00000024949	Sf1	BBP|MZFM|WBP4|Zfp162	splicing factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-136135284-1	chr4	136135184	136135384	+	973.0	f1_balb.idr	Intergenic	CpG	-8538.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-26199251-2	chr6	26199151	26199351	+	961.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	267825.0	NR_040771	626904.0	Mm.126787	NR_040771	ENSMUSG00000106799	Gm20756	-	predicted gene, 20756	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-23696063-4	chr11	23695954	23696154	+	996.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033654, intron 4 of 17)	intron (NM_001033654, intron 4 of 17)	30078.0	NM_028304	74467.0	Mm.29536	NM_028304	ENSMUSG00000020280	Pus10	2810013G11Rik|4933435A13Rik|AU014648|C77560|Ccdc139	pseudouridylate synthase 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-68723830-4	chr10	68723746	68723946	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177794)	promoter-TSS (NM_177794)	100.0	NM_177794	327766.0	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-33824968-2	chr6	33824868	33825068	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009148, intron 12 of 17)	intron (NM_009148, intron 12 of 17)	-204480.0	NM_028886	74354.0	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-83728675-3	chr9	83728577	83728777	+	715.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37202.0	NR_046066	100039222.0	Mm.405596	NR_046066	ENSMUSG00000100155	Gm2109	-	predicted gene 2109	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-68002355-3	chr8	68002254	68002454	+	804.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27780.0	NM_177698	234353.0	Mm.32525	NM_027626	ENSMUSG00000030465	Psd3	4931420C21Rik|AI661273|BC003498|D430018P08|EFA6D	pleckstrin and Sec7 domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-15564387-4	chr17	15564268	15564468	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1045.0	NM_144809	213389.0	Mm.215162	NM_144809	ENSMUSG00000051977	Prdm9	BC012016|Dsbc1|G1-419-29|Meisetz|PRDM9-B|Rcr1|repro7	PR domain containing 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-102978002-4	chr2	102977895	102978095	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-76330.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-66186632-2	chr9	66186532	66186732	+	585.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010019, intron 2 of 11)	intron (NM_010019, intron 2 of 11)	28406.0	NM_010019	13143.0	Mm.304472	NM_010019	ENSMUSG00000032380	Dapk2	-	death-associated protein kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140608921-4	chr5	140608821	140609021	+	928.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008494, intron 1 of 7)	intron (NM_008494, intron 1 of 7)	1580.0	NM_008494	16848.0	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34022482-2	chr17	34022382	34022582	+	687.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_009066, exon 5 of 7)	exon (NM_009066, exon 5 of 7)	2198.0	NM_009066	19763.0	Mm.20343	NM_009066	ENSMUSG00000024325	Ring1	Ring1A	ring finger protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43249374-4	chr4	43249279	43249479	+	961.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081413, intron 24 of 39)	intron (NM_001081413, intron 24 of 39)	-17780.0	NM_177195	320571.0	Mm.74465	NM_177195	ENSMUSG00000028457	Atp8b5	4930417M19Rik|Feta	ATPase, class I, type 8B, member 5	protein-coding	3.340602962014	2.73098887770992	1.7132634987179	3.73385802870274	4.23767165727759	3.61286198682216	3.9318555156419	4.31151032700418	1.42564040431606	0.0198241705505026	0.178387798698698
Merged-chr3-58982967-2	chr3	58982867	58983067	+	691.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR41B|LTR|ERVL	-24011.0	NM_177855	329650.0	Mm.240059	NM_177855	ENSMUSG00000056476	Med12l	A130035F20|A630079M02|AU044581|TRALPUSH	mediator complex subunit 12-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-9931283-4	chr19	9931175	9931375	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31742.0	NM_016692	16319.0	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	0.605035262449156	1.80345269074203	1.62342617282254	0.628227907233219	0.608550724465357	1.82078543886355	1.08840838861341	0.630610915852611	-0.463640719773943	0.76944808333931	0.998431161219273
Merged-chr3-153261731-2	chr3	153261631	153261831	+	920.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011372, intron 3 of 4)	intron (NM_011372, intron 3 of 4)	36918.0	NR_126464	75489.0	Mm.443252	NR_126464	ENSMUSG00000105023	1700012D16Rik	-	RIKEN cDNA 1700012D16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-36645190-2	chr16	36645090	36645290	+	616.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019388, intron 1 of 7)	intron (NM_019388, intron 1 of 7)	20887.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-125282697-4	chr8	125282581	125282781	+	990.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	210152.0	NM_001081337	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	4.37066398265087	3.82919595829776	3.17605445022551	3.60096627139321	3.80318970549637	2.12604970733148	2.82138652570018	3.9845871269944	-0.623868457978118	0.319325171792359	0.821951596143819
Merged-chr16-93832200-4	chr16	93832101	93832301	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001045529)	promoter-TSS (NM_001045529)	80.0	NM_001045529	338467.0	Mm.287329	NM_001045529	ENSMUSG00000039456	Morc3	1110051N18Rik|AI452146|BF318192|D16Jhu32e|NXP2|Zcwcc3	microrchidia 3	protein-coding	6.40195905737124	6.67304271500863	6.91263016736696	6.66825286284754	6.30278751362482	6.33458893508771	6.47997052904103	6.32638646021177	-0.332770387126953	0.0923849748727144	0.470077818980346
Merged-chr11-80137001-3	chr11	80136891	80137091	+	976.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_183275, exon 4 of 4)	exon (NM_183275, exon 4 of 4)	5162.0	NM_183275	68550.0	Mm.18466	NM_183275	ENSMUSG00000046909	Tefm	1110002N22Rik	transcription elongation factor, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-30686765-3	chr15	30686663	30686863	+	815.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355502, intron 9 of 21)	intron (NM_001355502, intron 9 of 21)	-352363.0	NR_045186	73784.0	Mm.66947	NR_045186	ENSMUSG00000115474	4930430F21Rik	-	RIKEN cDNA 4930430F21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102387443-4	chr12	102387334	102387534	+	980.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177620, intron 8 of 9)	intron (NM_177620, intron 8 of 9)	52379.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46671835-2	chr8	46671735	46671935	+	744.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54544.0	NM_009810	12367.0	Mm.34405	NM_009810	ENSMUSG00000031628	Casp3	A830040C14Rik|AC-3|CASP-3|CC3|CPP-32|CPP32|Caspase-3|Lice|SCA-1|Yama|mldy	caspase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-50689634-2	chr2	50689534	50689734	+	640.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-220050.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-48320773-3	chr17	48320678	48320878	+	673.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177083, intron 3 of 5)	intron (NM_177083, intron 3 of 5)	4616.0	NM_177083	320148.0	Mm.123455	NM_177083	ENSMUSG00000043740	B430306N03Rik	Treml6	RIKEN cDNA B430306N03 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-46821607-4	chr12	46821550	46821750	+	989.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-2875.0	NM_021361	664883.0	Mm.247195	NM_021361	ENSMUSG00000021047	Nova1	9430099M15Rik|G630039L02|Nova-1	neuro-oncological ventral antigen 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-68121289-2	chr8	68121096	68121296	+	980.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-146622.0	NM_177698	234353.0	Mm.32525	NM_027626	ENSMUSG00000030465	Psd3	4931420C21Rik|AI661273|BC003498|D430018P08|EFA6D	pleckstrin and Sec7 domain containing 3	protein-coding	-1.26297147305202	-1.51336964835199	-1.52290115558626	-1.53073061942109	-1.54267576991114	-1.36133000838898	-1.52074343127311	-1.52932914913802	-0.563746499231123	0.872676935132172	1
Merged-chr19-46331452-2	chr19	46331352	46331552	+	815.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001164295, exon 6 of 9)	exon (NM_001164295, exon 6 of 9)	3268.0	NM_133694	68431.0	Mm.19973	NM_133694	ENSMUSG00000025226	Fbxl15	0710008C12Rik|Fbxo37	F-box and leucine-rich repeat protein 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126521117-2	chr8	126521017	126521217	+	760.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46052.0	NM_001159907	212728.0	Mm.482479	NM_001159907	ENSMUSG00000090290	Tarbp1	Gm17296|Gm179	TAR RNA binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-32745893-4	chr5	32745801	32746001	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347332, intron 1 of 8)	intron (NM_001347332, intron 1 of 8)	441.0	NM_001347332	320951.0	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-128058750-4	chr7	128058657	128058857	+	751.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR26_Mus|LTR|ERVK	-3883.0	NM_001082960	16409.0	Mm.262106	NM_008401	ENSMUSG00000030786	Itgam	CD11b/CD18|CR3|CR3A|Cd11b|F730045J24Rik|Ly-40|MAC1|Mac-1|Mac-1a	integrin alpha M	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133463308-3	chr4	133463216	133463416	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16817.0	NM_175307	100342.0	Mm.204656	NM_175307	ENSMUSG00000046694	Fam46b	4732473B16Rik|AU045678|AU046069	family with sequence similarity 46, member B	protein-coding	2.62990792039627	3.33796713825093	3.31827148431903	1.61496113161904	3.97750290745553	3.79470041369066	3.5189615397452	4.16143680202181	1.56005153200932	0.0130386991864421	0.131313636966088
Merged-chr10-61342126-2	chr10	61342026	61342226	+	572.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013753, intron 15 of 19)	intron (NM_013753, intron 15 of 19)	41397.0	NM_013753	27355.0	Mm.269699	NM_013753	ENSMUSG00000020092	Pald1	MMPAL|Pald|mKIAA1274	phosphatase domain containing, paladin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-136649107-1	chr4	136649007	136649207	+	722.0	f1_c57bl6.idr	3' UTR (NM_001290753, exon 16 of 16)	3' UTR (NM_001290753, exon 16 of 16)	26486.0	NM_001243262	242707.0	Mm.448979	NM_001243262	ENSMUSG00000070683	Lactbl1	-	lactamase, beta-like 1	protein-coding	2.16711601768572	1.8704268926481	0.805368436216484	0.534564114583292	1.07133807971433	0.571636725232402	0.553321792689877	0.537154495969953	-3.1652546282714	0.0500804771951059	0.326320908066735
Merged-chr10-13299879-2	chr10	13299818	13300018	+	873.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001195065, intron 1 of 12)	MIRb|SINE|MIR	24371.0	NM_001195096	215789.0	Mm.283359	NM_001033257	ENSMUSG00000062866	Phactr2	AV158170|BC012871	phosphatase and actin regulator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32379600-2	chr2	32379500	32379700	+	566.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198001, intron 1 of 1)	intron (NM_198001, intron 1 of 1)	2315.0	NM_198001	73737.0	Mm.27608	NM_198001	ENSMUSG00000039195	1110008P14Rik	C79326	RIKEN cDNA 1110008P14 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-76954695-3	chr5	76954594	76954794	+	685.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356974, intron 1 of 8)	RMER6A|LTR|ERVK	-3116.0	NM_172146	231327.0	Mm.202337	NM_172146	ENSMUSG00000029246	Ppat	5730454C12Rik|AA408689|AA675351|AI507113|C79945	phosphoribosyl pyrophosphate amidotransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-22430307-1	chr15	22430207	22430407	+	869.0	f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	284677.0	NM_001165971	545091.0	Mm.475598	NM_001165971		Hnrnpa1l2-ps2	EG545091|Gm5803	heterogeneous nuclear ribonucleoprotein A1-like 2, pseudogene 2	protein-coding	0.192194538515042	0.851231213619437	0.206676292614888	0.201249708073008	0.348169373128624	0.73653758261023	0.208223904199928	0.865842292871905	1.02215185473132	0.602695986882463	1
Merged-chr1-136346103-4	chr1	136346000	136346200	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347110)	promoter-TSS (NM_001347110)	4.0	NM_001347109	67886.0	Mm.144143	NM_001081360	ENSMUSG00000041570	Camsap2	1600013L13Rik|4930541M15Rik|Camsap1l1|mKIAA1078	calmodulin regulated spectrin-associated protein family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135887873-4	chr5	135887780	135887980	+	936.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013560)	promoter-TSS (NM_013560)	-39.0	NM_013560	15507.0	Mm.13849	NM_013560	ENSMUSG00000004951	Hspb1	27kDa|Hsp25	heat shock protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166425967-2	chr2	166425867	166426067	+	601.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21484.0	NR_015558	319684.0	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-90026199-4	chr7	90026097	90026297	+	944.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2962.0	NR_110365	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-105779849-2	chr7	105779749	105779949	+	916.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162943, intron 1 of 20)	B1_Mm|SINE|Alu	7701.0	NM_001162943	233651.0	Mm.334108	NM_001162943	ENSMUSG00000036862	Dchs1	3110041P15Rik|C130033F22Rik|CDH25|FIB1|Gm165|PCDH16	dachsous cadherin related 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126697442-2	chr7	126697342	126697542	+	573.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_175103)	TTS (NM_175103)	1442.0	NM_175103	66162.0	Mm.358692	NM_175103	ENSMUSG00000047721	Bola2	1110025L05Rik|BolA-2	bolA-like 2 (E. coli)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-71041106-1	chr16	71041006	71041206	+	608.0	f1_balb.idr	Intergenic	L1_Mus1|LINE|L1	-89970.0	NR_040561	70972.0	Mm.399391	NR_040561		4931420L22Rik	-	RIKEN cDNA 4931420L22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-99360349-4	chr5	99360235	99360435	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-107408.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-78897375-1	chr1	78897275	78897475	+	761.333313	f0_balb.idr	intron (NR_151519, intron 3 of 3)	MLTR25A|LTR|ERVK	80464.0	NM_021342	57814.0	Mm.24386	NM_021342	ENSMUSG00000047330	Kcne4	AW487937|MiRP3	potassium voltage-gated channel, Isk-related subfamily, gene 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-158029377-2	chr2	158029277	158029477	+	742.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029282)	promoter-TSS (NM_029282)	880.0	NM_001291135	70470.0	Mm.290810	NM_027434	ENSMUSG00000027651	Rprd1b	2610304G08Rik|2810446G03Rik|Crept	regulation of nuclear pre-mRNA domain containing 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76805988-4	chr15	76805885	76806085	+	820.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198420, intron 1 of 10)	L1M4|LINE|L1	12185.0	NM_001168288	223666.0	Mm.322931	NM_198420	ENSMUSG00000033697	Arhgap39	9530053N22|AI843066|D15Wsu169e|Kiaa1688|Porf-2	Rho GTPase activating protein 39	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122891336-2	chr8	122891236	122891436	+	712.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_037865, exon 10 of 14)	non-coding (NR_037865, exon 10 of 14)	42962.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-170282617-4	chr1	170282527	170282727	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012009, intron 2 of 3)	intron (NM_012009, intron 2 of 3)	5309.0	NR_153837	26904.0	Mm.57009	NM_012009	ENSMUSG00000102418	Sh2d1b1	EAT-2|EAT-2A|Eat2|Eat2a|Sh2d1b	SH2 domain containing 1B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-11544559-4	chr2	11544465	11544665	+	954.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177758, intron 1 of 14)	intron (NM_001177758, intron 1 of 14)	9364.0	NM_001177758	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96596000-2	chr3	96595900	96596100	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024851)	promoter-TSS (NM_001024851)	-636.0	NM_001024851	545554.0	Mm.267664	NM_001024851	ENSMUSG00000049097	Ankrd34a	AW060394|Ankrd34	ankyrin repeat domain 34A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-142082916-4	chr4	142082812	142083012	+	923.991699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145402, intron 1 of 2)	intron (NM_145402, intron 1 of 2)	-1386.0	NR_027137	100038693.0	Mm.402714	NR_027137	ENSMUSG00000073728	Tmem51os1	Gm10565|Tmem51as1	Tmem51 opposite strand 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-20929289-4	chr14	20929190	20929390	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009502)	promoter-TSS (NM_009502)	-108.0	NM_009502	22330.0	Mm.279361	NM_009502	ENSMUSG00000021823	Vcl	9430097D22|AA571387|AI462105|AW545629	vinculin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-103210157-1	chr15	103210057	103210257	+	630.0	f1_balb.idr	intron (NM_001358950, intron 2 of 4)	B2_Mm1t|SINE|B2	5195.0	NM_007626	12419.0	Mm.262059	NM_007626	ENSMUSG00000009575	Cbx5	2610029O15Rik|C75991|HP1|Hp1a|Hp1alpha	chromobox 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-26447858-2	chr2	26447758	26447958	+	847.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_152209, intron 1 of 2)	intron (NR_152209, intron 1 of 2)	1934.0	NR_152207	100125929.0	Mm.392411	NR_152207		0610009E02Rik	-	RIKEN cDNA 0610009E02 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-95521817-4	chr11	95521797	95521997	+	688.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7332.0	NM_130858	104079.0	Mm.22970	NM_130858	ENSMUSG00000046719	Nxph3	-	neurexophilin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78599341-4	chr15	78599234	78599434	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028195, intron 1 of 12)	intron (NM_028195, intron 1 of 12)	2287.0	NM_028195	72318.0	Mm.32911	NM_028195	ENSMUSG00000018008	Cyth4	2510004M07Rik|5830469K17Rik|AI467541|Pscd4|mFLJ00017	cytohesin 4	protein-coding	3.48599623874905	3.76278812519326	2.87286455735813	4.40596487913232	3.15752402819323	3.13387060759737	1.68392526376766	3.75086312487051	-0.949636536878284	0.162062586027695	0.623213752294964
Merged-chr19-41597741-4	chr19	41597639	41597839	+	903.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9088.0	NR_106166	102465884.0		NR_106166	ENSMUSG00000098286	Mir8091	Gm27575|mmu-mir-8091	microRNA 8091	ncRNA	3.8384272728466	3.12381368152988	3.40497612260121	3.53352284230595	3.08727697351242	2.73254925893837	3.72500035076766	2.94631278463903	-0.524094608134853	0.37095725209821	0.863911489096448
Merged-chr3-52030376-3	chr3	52030310	52030510	+	834.833374	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	74596.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-181244959-2	chr2	181244859	181245059	+	771.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2932.0	NM_183162	229003.0	Mm.315872	NM_183162	ENSMUSG00000027580	Helz2	PDIP1|Pric285|mKIAA1769|mPDIP1	helicase with zinc finger 2, transcriptional coactivator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-53431213-4	chr10	53431129	53431329	+	985.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21347.0	NR_152767	102640074.0	Mm.412957	NR_152767		Gm36229	-	predicted gene, 36229	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-13754573-2	chr8	13754473	13754673	+	560.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-3083.0	NM_027276	69957.0	Mm.182412	NM_027276	ENSMUSG00000038416	Cdc16	2700071J12Rik|2810431D22Rik|APC6	CDC16 cell division cycle 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-32635116-4	chr17	32635027	32635227	+	988.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001100187, exon 13 of 13)	exon (NM_001100187, exon 13 of 13)	13808.0	NM_001100187	677156.0	Mm.484117	NM_001100187	ENSMUSG00000062464	Cyp4f37	Gm9705	cytochrome P450, family 4, subfamily f, polypeptide 37	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-93985425-2	chr6	93985325	93985525	+	764.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001029850, intron 1 of 23)	intron (NM_001029850, intron 1 of 23)	-71735.0	NM_001083320	14924.0	Mm.217216	NM_010367	ENSMUSG00000045095	Magi1	AIP3|BAP1|Baiap1|Gukmi1|MAGI1c|Magi-1|TNRC19|WWP3|mKIAA4129	membrane associated guanylate kinase, WW and PDZ domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-29539517-2	chr6	29539417	29539617	+	864.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001311083, intron 9 of 9)	intron (NM_001311083, intron 9 of 9)	10235.0	NM_001252382	27056.0	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-22309840-3	chr9	22309747	22309947	+	752.722229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTRIS4|LTR|ERV1	-2209.0	NM_145612	235050.0	Mm.306038	NM_145612	ENSMUSG00000066829	Zfp810	BC005471	zinc finger protein 810	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56936983-2	chr17	56936883	56937083	+	598.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1595.0	NM_022328	64144.0	Mm.148748	NM_022328	ENSMUSG00000024212	Mllt1	AA407901|BAM11|ENL|LTG19	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-4792380-2	chr7	4792280	4792480	+	561.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009081)	promoter-TSS (NM_009081)	-585.0	NM_009081	19943.0	Mm.379002	NM_009081	ENSMUSG00000030432	Rpl28	D7Wsu21e	ribosomal protein L28	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-147083675-4	chr2	147083596	147083796	+	774.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_023504)	TTS (NM_023504)	1649.0	NM_023504	228731.0	Mm.315498	NM_023504	ENSMUSG00000054160	Nkx2-4	1700001P03Rik|Nkx-2.4|tinman	NK2 homeobox 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-119425764-2	chr9	119425661	119425861	+	626.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007397, intron 1 of 9)	intron (NM_007397, intron 1 of 9)	-19199.0	NR_153320	208194.0	Mm.101578	NM_172456	ENSMUSG00000042787	Exog	AW557704|ENGL-B|ENGL-a|Endogl1|Endogl2|Engl|Engla|Englb	endo/exonuclease (5'-3'), endonuclease G-like	protein-coding	-0.366853823055214	-0.817757735032605	-0.82134278401234	-0.407751149730632	-0.826731349290006	-0.815034507983735	-0.820702062995803	-0.823189746159009	-3.02586318656905	0.311514758661045	1
Merged-chr3-95134011-4	chr3	95133918	95134118	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153121)	promoter-TSS (NM_153121)	-6.0	NM_001163573	69269.0	Mm.182944	NM_027013	ENSMUSG00000092607	Scnm1	3110001I17Rik|Scnm1-ps	sodium channel modifier 1	protein-coding	6.11732541952207	5.47657031568292	5.63772208491125	5.57964534413155	5.49223420650637	5.93794826340117	5.56571656449339	6.16272404754568	0.089520997989031	0.741745142857511	0.998431161219273
Merged-chr5-43861304-4	chr5	43861184	43861384	+	735.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7525.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-110616023-4	chr7	110615937	110616137	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1117.0	NM_177324	319934.0	Mm.102970	NM_177324	ENSMUSG00000038371	Sbf2	4833411B01Rik|AA414977|AI317167|B430219L04Rik|Mtmr13|mMTMH1	SET binding factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-161195879-7	chr1	161195802	161196002	+	903.669067	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36588.0	NM_001195189	100502590.0	Mm.449990	NM_001195189	ENSMUSG00000049160	Tex50	4930469G21Rik	testis expressed 50	protein-coding	1.04317125570469	1.3483915104752	2.09328083969268	0.877599635608535	1.92561309128204	0.913296032796382	1.47156146766276	1.55442635457867	0.232378436896715	0.858149247485471	0.998431161219273
Merged-chr3-69598368-5	chr3	69598245	69598445	+	876.6333619999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020026, intron 1 of 2)	intron (NM_020026, intron 1 of 2)	615.0	NM_020026	26879.0	Mm.153710	NM_020026	ENSMUSG00000043300	B3galnt1	B3galt3|b3GT3	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 1	protein-coding	0.0286434648407497	0.523380732129042	0.0393305952755769	0.0353076605279188	0.171344080381393	0.0457336593134814	0.602493903093719	0.454491522922316	1.24008564875984	0.555951076749002	1
Merged-chr15-73732228-4	chr15	73732124	73732324	+	992.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166388, intron 1 of 5)	intron (NM_001166388, intron 1 of 5)	7294.0	NM_001166388	19245.0	Mm.390807	NM_008975	ENSMUSG00000059895	Ptp4a3	AV088979|Prl-3|pPtp4a3	protein tyrosine phosphatase 4a3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-106793724-4	chr6	106793632	106793832	+	834.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021449, intron 4 of 10)	intron (NM_021449, intron 4 of 10)	6355.0	NM_021449	58799.0	Mm.290085	NM_021449	ENSMUSG00000005362	Crbn	2610203G15Rik|2900045O07Rik|AF229032|AW108261|piL	cereblon	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-112991345-2	chr10	112991245	112991445	+	796.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62319.0	NM_001033474	382423.0	Mm.431239	NM_001033474	ENSMUSG00000074748	Atxn7l3b	4921506J03Rik|6230409E21Rik|AI315132	ataxin 7-like 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-151051351-4	chr4	151051241	151051441	+	896.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009498, intron 2 of 4)	L1MB5|LINE|L1	6612.0	NM_009498	22319.0	Mm.273930	NM_009498	ENSMUSG00000028955	Vamp3	D130027G05Rik|VAMP-3|ceb	vesicle-associated membrane protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-37028872-4	chr17	37028762	37028962	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5464.0	NM_010814	17441.0	Mm.210857	NM_010814	ENSMUSG00000076439	Mog	B230317G11Rik	myelin oligodendrocyte glycoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-104601380-2	chr8	104601280	104601480	+	991.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001252628)	TTS (NM_001252628)	9912.0	NM_001024606	382051.0	Mm.290750	NM_001024606	ENSMUSG00000048371	Pdp2	4833426J09Rik|Gm1705|mKIAA1348	pyruvate dehyrogenase phosphatase catalytic subunit 2	protein-coding	-0.426827589768372	-0.412976494815565	-0.417502693348487	0.326168356023474	-0.425959838555117	0.111561399234296	-0.416503450375035	-0.420390571739767	-0.679704242644282	0.800472587850286	1
Merged-chr15-73067621-4	chr15	73067529	73067729	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6425.0	NM_001164643	76510.0	Mm.158902	NM_029640	ENSMUSG00000047921	Trappc9	1810044A24Rik|2900005P22Rik|4632408O18Rik|Ibp|Nibp|TRS130|mKIAA1882	trafficking protein particle complex 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-17788197-4	chr6	17788091	17788291	+	670.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022332, intron 1 of 15)	RMER1C|Other|Other	39021.0	NM_001083315	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111432324-4	chr12	111432208	111432408	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_028807)	TTS (NM_028807)	-10353.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89388284-2	chr3	89388184	89388384	+	657.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355206)	promoter-TSS (NM_001355206)	-613.0	NM_001355206	22724.0	Mm.262184	NM_009565	ENSMUSG00000028042	Zbtb7b	Thpok|Zfp67|c-Krox	zinc finger and BTB domain containing 7B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-86670788-2	chr11	86670688	86670888	+	792.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029478, intron 1 of 11)	intron (NM_029478, intron 1 of 11)	487.0	NM_001356531	75909.0	Mm.390398	NM_029478	ENSMUSG00000018171	Vmp1	3110098I04Rik|4930579A11Rik|AI787464|Tango5|Tmem49|mir-21a|ni-2	vacuole membrane protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-155831550-4	chr4	155831372	155831572	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_025338, exon 1 of 4)	5' UTR (NM_025338, exon 1 of 4)	203.0	NM_025338	66077.0	Mm.28999	NM_025338	ENSMUSG00000065990	Aurkaip1	0610033H09Rik|Aip|Akip|MRP-S38	aurora kinase A interacting protein 1	protein-coding	6.41448434090091	5.99577007165018	6.2125309582095	5.7171975211254	6.04634073423181	5.90990897805505	5.74637961767194	5.57225279351797	-0.310228053916362	0.210340474365172	0.69949048545273
Merged-chr11-105451905-2	chr11	105451805	105452005	+	713.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039242, intron 2 of 5)	intron (NM_001039242, intron 2 of 5)	4830.0	NM_172568	632687.0	Mm.121570	NM_172568	ENSMUSG00000078627	March10	4933417C16Rik|AV039223|Rnf190	membrane-associated ring finger (C3HC4) 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-60994390-2	chr9	60994290	60994490	+	583.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22679.0	NR_040767	330956.0	Mm.207985	NR_040767	ENSMUSG00000111290	Gm5122	A430102L10	predicted gene 5122	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-90213648-1	chr7	90213548	90213748	+	742.0	f0_c57.idr	Intergenic	Intergenic	51784.0	NM_029256	75338.0	Mm.487222	NM_029256	ENSMUSG00000030617	Ccdc83	4930549K11Rik|4930554C01Rik|4932423M01Rik	coiled-coil domain containing 83	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-78186144-1	chr9	78186044	78186244	+	602.0	f1_c57bl6.idr	Intergenic	RMER15-int|LTR|ERVL	-5822.0	NM_010357	14860.0	Mm.2662	NM_010357	ENSMUSG00000032348	Gsta4	GST5.7|mGsta4	glutathione S-transferase, alpha 4	protein-coding	2.17121234554995	3.19297424768509	2.39126119163097	3.45174324960655	0.944768499201033	1.08478695986902	1.04246294423829	1.30200832329059	-5.4436755326372	1.63080263742487e-05	0.000684138812721103
Merged-chr7-28444147-4	chr7	28444039	28444239	+	948.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039192, intron 4 of 6)	intron (NM_001039192, intron 4 of 6)	3202.0	NM_001039192	63986.0	Mm.194536	NM_022024	ENSMUSG00000060791	Gmfg	0610039G16Rik|2310057N07Rik|AI324845	glia maturation factor, gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153115892-4	chr2	153115781	153115981	+	844.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001172117, intron 1 of 12)	intron (NM_001172117, intron 1 of 12)	7413.0	NM_010407	15162.0	Mm.715	NM_010407	ENSMUSG00000003283	Hck	AI849071|Bmk	hemopoietic cell kinase	protein-coding	2.23991012893847	2.84114702765285	1.96326101261546	2.22725388827665	2.72299187845014	2.75950842643175	2.441077964491	2.77438500100664	0.694479920606626	0.367561278847172	0.862563611346011
Merged-chr13-100785941-2	chr13	100785841	100786041	+	609.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172301, intron 1 of 8)	intron (NM_172301, intron 1 of 8)	545.0	NM_172301	268697.0	Mm.260114	NM_172301	ENSMUSG00000041431	Ccnb1	Ccnb1-rs1|Ccnb1-rs13|CycB1|Cycb-4|Cycb-5|Cycb1-rs1	cyclin B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-31631495-2	chr18	31631395	31631595	+	621.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2873.0	NM_001357554	269003.0	Mm.194538	NM_172965	ENSMUSG00000024260	Sap130	2610304F09Rik|6720406D06	Sin3A associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-84329682-4	chr17	84329595	84329795	+	712.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183021, intron 28 of 37)	intron (NM_183021, intron 28 of 37)	136513.0	NM_183021	240174.0	Mm.246767	NM_177826	ENSMUSG00000024251	Thada	6530405K19|A930021O22|AU019899|BC052885|GITA	thyroid adenoma associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-63859011-3	chr5	63858918	63859118	+	813.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029554, intron 1 of 3)	intron (NM_029554, intron 1 of 3)	46523.0	NM_029554	76261.0	Mm.38143	NM_029554	ENSMUSG00000060512	0610040J01Rik	AI662686	RIKEN cDNA 0610040J01 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-62187796-2	chr18	62187696	62187896	+	817.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7696.0	NM_001013754	225609.0	Mm.296917	NM_001013754	ENSMUSG00000054589	Gm9949	EG225609	predicted gene 9949	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-114380070-2	chr9	114379970	114380170	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019922, intron 4 of 6)	intron (NM_019922, intron 4 of 6)	10642.0	NM_019922	56693.0	Mm.20904	NM_019922	ENSMUSG00000032431	Crtap	5730529N23Rik|CASP|Leprel3|P3h5	cartilage associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45534411-2	chr7	45534311	45534511	+	667.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_148927, intron 4 of 19)	intron (NM_148927, intron 4 of 19)	8081.0	NM_148927	69217.0	Mm.274158	NM_148927	ENSMUSG00000040428	Plekha4	2410005C22Rik|C88169|Pepp1	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-73936780-4	chr17	73936687	73936887	+	938.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011723, intron 4 of 35)	intron (NM_011723, intron 4 of 35)	13409.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-98938173-2	chr15	98938073	98938273	+	937.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3783.0	NM_011654	22143.0	Mm.392113	NM_011654	ENSMUSG00000023004	Tuba1b	Tuba2	tubulin, alpha 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-113152035-4	chr12	113151899	113152099	+	969.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007763)	promoter-TSS (NM_007763)	-13.0	NM_007763	12925.0	Mm.272368	NM_007763	ENSMUSG00000006360	Crip1	CRHP|CRP1|Crip	cysteine-rich protein 1 (intestinal)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-87511153-4	chr6	87511059	87511259	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037727, intron 1 of 10)	intron (NM_001037727, intron 1 of 10)	-14832.0	NM_175476	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-163744713-5	chr2	163744472	163744672	+	889.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001272052, intron 1 of 11)	intron (NM_001272052, intron 1 of 11)	5667.0	NM_007398	11486.0	Mm.388	NM_007398	ENSMUSG00000017697	Ada	-	adenosine deaminase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-128458233-1	chr8	128458133	128458333	+	662.0	f0_balb.idr	intron (NM_001358959, intron 7 of 16)	intron (NM_001358959, intron 7 of 16)	98992.0	NR_035436	100316680.0		NR_035436	ENSMUSG00000084523	Mir1903	Mirn1903|mmu-mir-1903	microRNA 1903	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-113613710-2	chr7	113613610	113613810	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48723.0	NR_126544	69295.0	Mm.396150	NR_126544	ENSMUSG00000084984	Far1os	1700006P19Rik	fatty acyl CoA reductase 1, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-98958940-4	chr10	98958850	98959050	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359507, intron 1 of 21)	intron (NM_001359507, intron 1 of 21)	43798.0	NM_026482	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-61838925-2	chr10	61838825	61839025	+	647.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001304757, intron 37 of 37)	intron (NM_001304757, intron 37 of 37)	-55061.0	NM_207000	404634.0	Mm.272870	NM_207000	ENSMUSG00000020086	H2afy2	macroH2A2	H2A histone family, member Y2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10241449-2	chr19	10241349	10241549	+	909.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033481)	promoter-TSS (NM_001033481)	-701.0	NM_001033481	225908.0	Mm.329716	NM_001033481	ENSMUSG00000036098	Myrf	6030439E18|Gm1804|Gm98|Mrf	myelin regulatory factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-54140250-4	chr11	54140157	54140357	+	977.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	39333.0	NM_011031	18452.0	Mm.3705	NM_011031	ENSMUSG00000018906	P4ha2	AA407196|C76437|P4hl	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4754792-2	chr16	4754692	4754892	+	667.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010443, intron 1 of 5)	intron (NM_010443, intron 1 of 5)	-2154.0	NM_001357050	15369.0	Mm.272866	NM_010443	ENSMUSG00000004070	Hmox2	HO-2|HO2	heme oxygenase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30415535-2	chr7	30415435	30415635	+	802.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_011662, intron 3 of 4)	RMER17C|LTR|ERVK	1747.0	NM_011662	22177.0	Mm.46301	NM_011662	ENSMUSG00000030579	Tyrobp	DAP12|KARAP|Ly83	TYRO protein tyrosine kinase binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-72230791-4	chr5	72230704	72230904	+	915.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_003966, intron 3 of 22)	intron (NR_003966, intron 3 of 22)	27461.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-83539074-2	chr9	83538979	83539179	+	677.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9259.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-37547026-4	chr19	37546968	37547168	+	838.287476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3350.0	NM_175353	107371.0	Mm.24865	NM_175353	ENSMUSG00000053799	Exoc6	4833405E05Rik|AW413330|C430002C19|Sec15|Sec15l1|hbd|msec15	exocyst complex component 6	protein-coding	2.24332297069727	1.80740165890166	2.21175477430922	2.14762321129905	2.89441464464946	1.59749001502739	1.29091981595405	2.79430392630819	0.544776299219171	0.578534300602445	0.965985075107763
Merged-chr3-159528641-1	chr3	159528541	159528741	+	671.0	f0_balb.idr	intron (NM_029523, intron 11 of 11)	intron (NM_029523, intron 11 of 11)	33208.0	NM_001172092	76131.0	Mm.371655	NM_029523	ENSMUSG00000028175	Depdc1a	5830484J08Rik|Depdc1	DEP domain containing 1a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27442420-4	chr2	27442340	27442540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360790)	promoter-TSS (NM_001360790)	4.0	NM_001360792	100504116.0	Mm.36529	NM_001360790		Brd3os	A230069D13|D2Bwg1423e|Gm20071	bromodomain containing 3, opposite strand	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-124990402-5	chr4	124990295	124990495	+	832.766663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138683, intron 1 of 5)	intron (NM_138683, intron 1 of 5)	3965.0	NM_138683	192199.0	Mm.42202	NM_138683	ENSMUSG00000028871	Rspo1	R-spondin|Rspondin	R-spondin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-145685103-3	chr2	145685015	145685215	+	694.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-16080.0	NR_033220	408057.0	Mm.486711	NR_033220	ENSMUSG00000087594	BC039771	-	cDNA sequence BC039771	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-116058630-4	chr9	116058524	116058724	+	870.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028638, intron 14 of 14)	intron (NM_028638, intron 14 of 14)	116739.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	2.37731949429214	2.42896674703541	2.35020926666723	2.39905492259077	1.7889333016127	2.31021812435385	2.48472674949749	2.77207938080297	0.00794753722860489	0.992209760597667	0.998431161219273
Merged-chr16-49957119-4	chr16	49957025	49957225	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153658, intron 1 of 1)	intron (NR_153658, intron 1 of 1)	1295.0	NR_153658	100503490.0	Mm.72499	NR_153658		Gm19723	-	predicted gene, 19723	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-61877790-3	chr8	61877682	61877882	+	653.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081390, exon 2 of 20)	exon (NM_001081390, exon 2 of 20)	24908.0	NM_001081390	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3930822-3	chr19	3930716	3930916	+	856.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1100.0	NM_026316	67689.0	Mm.109341	NM_026316	ENSMUSG00000024885	Aldh3b1	1700001N19Rik|ALDH4|ALDH7	aldehyde dehydrogenase 3 family, member B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-34651114-4	chr13	34650989	34651189	+	890.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025831, intron 1 of 4)	intron (NM_025831, intron 1 of 4)	1592.0	NM_025831	66895.0	Mm.28943	NM_025831	ENSMUSG00000021411	Pxdc1	1300014I06Rik	PX domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-77619841-4	chr10	77619724	77619924	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14_RN|LTR|ERV1	-2497.0	NM_019803	22213.0	Mm.458125	NM_019803	ENSMUSG00000009293	Ube2g2	1110003O05Rik|D10Xrf369|UBC7|Ubc7p	ubiquitin-conjugating enzyme E2G 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-140945236-2	chr7	140945136	140945336	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153832, intron 5 of 11)	intron (NR_153832, intron 5 of 11)	3845.0	NM_145387	212974.0	Mm.260139	NM_145387	ENSMUSG00000062031	Pgghg	5730511L01Rik|Athl1|BC023151	protein glucosylgalactosylhydroxylysine glucosidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-99560817-4	chr12	99560723	99560923	+	848.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3018.0	NR_136760	102639404.0	Mm.396324	NR_136760	ENSMUSG00000097917	Gm26839	-	predicted gene, 26839	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-40504204-4	chr12	40504099	40504299	+	975.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	L1M2|LINE|L1	58146.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-17626106-2	chr17	17626006	17626206	+	585.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1617.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-163417460-2	chr2	163417360	163417560	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025699, intron 1 of 3)	intron (NM_025699, intron 1 of 3)	2010.0	NM_025699	66680.0	Mm.25119	NM_025699	ENSMUSG00000035399	Oser1	3230401D17Rik|AI256769|Perit1	oxidative stress responsive serine rich 1	protein-coding	1.06621890029674	1.479173287607	0.785861775896765	1.12133099698023	1.58123730647941	1.60975949064497	0.788636295088882	1.12701361362946	0.760837131569849	0.578709546410606	0.965985075107763
Merged-chr4-99163729-4	chr4	99163627	99163827	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30207.0	NM_175029	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101858597-4	chr7	101858489	101858689	+	951.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008034, exon 7 of 7)	exon (NM_008034, exon 7 of 7)	-1399.0	NM_001303239	14276.0	Mm.439666	NM_008035	ENSMUSG00000032725	Folr2	FBP2|FR-P3|FR-beta|Folbp-2|Folbp2	folate receptor 2 (fetal)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-27258699-4	chr7	27258568	27258768	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010950)	promoter-TSS (NM_010950)	-93.0	NM_010950	18223.0	Mm.458153	NM_010950	ENSMUSG00000063160	Numbl	nbl	numb-like	protein-coding	4.99372774577768	4.88077769423742	4.73273109095405	4.21227063355445	4.97423860074091	4.16936520060069	3.86986704395927	4.97245492389121	-0.176042135767364	0.662378818839217	0.991056031673253
Merged-chr7-126230556-3	chr7	126230458	126230658	+	838.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131046, intron 2 of 4)	RMER1C|Other|Other	7046.0	NR_131047	76728.0	Mm.76920	NR_131046	ENSMUSG00000108676	1700123J17Rik	Gm44875	RIKEN cDNA 1700123J17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-66069806-4	chr9	66069707	66069907	+	974.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001025612)	promoter-TSS (NM_001025612)	-76.0	NM_001025612	382083.0	Mm.477103	NM_001025612	ENSMUSG00000039452	Snx22	Gm1120	sorting nexin 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-85258100-1	chr1	85258000	85258200	+	547.0	f1_balb.idr	intron (NM_175219, intron 3 of 7)	intron (NM_175219, intron 3 of 7)	12466.0	NM_175219	620078.0	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik	RIKEN cDNA C130026I21 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118160296-2	chr11	118160196	118160396	+	574.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31077.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100187790-2	chr7	100187656	100187856	+	738.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9073.0	NM_001190871	57442.0	Mm.282386	NM_020574	ENSMUSG00000035165	Kcne3	2210017H05Rik|MiRP2	potassium voltage-gated channel, Isk-related subfamily, gene 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129381792-2	chr2	129381692	129381892	+	601.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10653.0	NM_008361	16176.0	Mm.222830	NM_008361	ENSMUSG00000027398	Il1b	IL-1beta|Il-1b	interleukin 1 beta	protein-coding	-1.2276735044944	-1.20138836966063	-1.21202761258731	-1.2207670035018	-1.22721880906488	-1.19908280133575	-0.751884428580139	-1.05459659029088	2.53706087379056	0.440403192504846	1
Merged-chr1-170997899-4	chr1	170997792	170997992	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21034.0	NM_144559	246256.0	Mm.251254	NM_144559	ENSMUSG00000059089	Fcgr4	4833442P21Rik|CD16-2|FcgRIV|FcgammaRIV|Fcgr3a|Fcrl3	Fc receptor, IgG, low affinity IV	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-83741281-4	chr8	83741173	83741373	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163031)	promoter-TSS (NM_001163031)	38.0	NM_001163029	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	6.54103861763772	6.87072072274849	6.36859701886733	6.162586616999	6.61264843829789	6.09173097926284	5.92503662775142	6.50612563964477	-0.20092892053568	0.388866269444965	0.878578793881975
Merged-chr11-73176583-4	chr11	73176527	73176727	+	979.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029564)	promoter-TSS (NM_029564)	381.0	NM_001168470	66048.0	Mm.73608	NM_025318	ENSMUSG00000047260	Emc6	0610009E20Rik|0610025L18Rik|Tmem93	ER membrane protein complex subunit 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-54781196-4	chr14	54781113	54781313	+	914.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_016972, exon 1 of 11)	exon (NM_016972, exon 1 of 11)	673.0	NM_016972	50934.0	Mm.276831	NM_016972	ENSMUSG00000022180	Slc7a8	AA408822|LAT2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55647688-2	chr14	55647588	55647788	+	728.200012	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2496.0	NM_001253888	71099.0	Mm.171300	NM_027673	ENSMUSG00000007591	Tssk4	1700020B19Rik|4933424F08Rik|TSK-4|TSSK-4	testis-specific serine kinase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166630925-3	chr2	166630843	166631043	+	761.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 5 of 39)	intron (NM_177782, intron 5 of 39)	66421.0	NR_152154	433503.0	Mm.491336	NR_152154		Gm29679	-	predicted gene, 29679	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-96638351-2	chr9	96638251	96638451	+	566.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6848.0	NM_053268	114713.0	Mm.124502	NM_053268	ENSMUSG00000032413	Rasa2	5430433H21Rik|AA517451|AU023900|GAP1m	RAS p21 protein activator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-117880824-2	chr6	117880724	117880924	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger6a|DNA|TcMar-Tigger	17943.0	NM_001001792	22685.0	Mm.249661	NM_008616	ENSMUSG00000042097	Zfp239	Mok-2|Mok2|Znf239	zinc finger protein 239	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-101540607-4	chr13	101540529	101540729	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-143049.0	NR_046187	78136.0	Mm.399065	NR_046187		4922502H24Rik	-	RIKEN cDNA 4922502H24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-53825596-4	chr11	53825505	53825705	+	890.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033332, intron 2 of 3)	intron (NR_033332, intron 2 of 3)	33651.0	NR_033332	622459.0	Mm.479656	NR_033332	ENSMUSG00000081769	Gm12216	602-19-115	predicted gene 12216	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-119439686-2	chr8	119439586	119439786	+	795.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027950, intron 1 of 5)	intron (NM_027950, intron 1 of 5)	2524.0	NM_027950	71839.0	Mm.272357	NM_027950	ENSMUSG00000074063	Osgin1	1700012B18Rik|Okl38	oxidative stress induced growth inhibitor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-122126384-4	chr2	122126283	122126483	+	785.295837	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026251, intron 7 of 17)	intron (NM_026251, intron 7 of 17)	-7997.0	NM_145531	214585.0	Mm.222303	NM_145531	ENSMUSG00000033396	Spg11	6030465E24Rik|A330015I11|C530005A01Rik	SPG11, spatacsin vesicle trafficking associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-12090378-4	chr16	12090338	12090538	+	986.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028277, intron 2 of 4)	intron (NM_028277, intron 2 of 4)	106325.0	NM_001174086	72555.0	Mm.310139	NM_028277	ENSMUSG00000022494	Shisa9	2700045P11Rik|Ckamp44	shisa family member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-95009376-3	chr8	95009218	95009418	+	872.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018882, intron 10 of 13)	intron (NM_018882, intron 10 of 13)	-8374.0	NM_173036	54672.0	Mm.27995	NM_173036	ENSMUSG00000060470	Adgrg3	A030001G24Rik|AW214383|Gpr97|Pb1|Pb99	adhesion G protein-coupled receptor G3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-31156484-4	chr7	31156396	31156596	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-5325.0	NR_153431	52857.0	Mm.27366	NM_027898	ENSMUSG00000001248	Gramd1a	1300003M23Rik|AI415002|AW547240|D7Bwg0611e	GRAM domain containing 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-4499653-2	chr7	4499553	4499753	+	732.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029834, intron 1 of 21)	ID_B1|SINE|B4	2027.0	NM_029834	232807.0	Mm.360391	NM_029834	ENSMUSG00000019254	Ppp1r12c	2410197A17Rik|AI839747|B430101M08|Mbs85	protein phosphatase 1, regulatory (inhibitor) subunit 12C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-21321780-4	chr11	21321684	21321884	+	973.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_139061)	TTS (NM_139061)	22891.0	NR_035454	100316753.0		NR_035454	ENSMUSG00000089555	Mir1933	mir-1933|mmu-mir-1933	microRNA 1933	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-36695977-4	chr13	36695871	36696071	+	906.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38506.0	NM_153529	68404.0	Mm.232930	NM_153529	ENSMUSG00000039114	Nrn1	0710008J23Rik|Cpg15|Nrn	neuritin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-73135144-4	chr15	73135041	73135241	+	959.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153178, intron 3 of 18)	ORR1B1|LTR|ERVL-MaLR	44729.0	NM_053068	93696.0	Mm.23095	NM_053068	ENSMUSG00000068391	Chrac1	2410152E03Rik|2810406L04Rik|YCL1	chromatin accessibility complex 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-57001535-4	chr10	57001435	57001635	+	910.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	484818.0	NR_045353	74928.0	Mm.416643	NR_045353	ENSMUSG00000097370	4930467K11Rik	-	RIKEN cDNA 4930467K11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-25284539-4	chr15	25284434	25284634	+	894.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	129230.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-121804521-1	chr14	121804421	121804621	+	553.0	f1_c57bl6.idr	Intergenic	Intergenic	-6787.0	NM_134074	105445.0	Mm.378591	NM_134074	ENSMUSG00000025558	Dock9	AA959601|AW538057|B230309H04Rik|D14Wsu89e|Zizimin1|mKIAA1058	dedicator of cytokinesis 9	protein-coding	-0.728572924008085	-1.17057459050977	-1.18109554477159	-1.02905471305413	-1.19471968003335	-1.16829465583203	-1.17871383133946	-1.18819081569687	-2.48427982178422	0.451070541628149	1
Merged-chr10-19016865-2	chr10	19016765	19016965	+	653.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1455.0	NM_009397	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-8173832-4	chr14	8173717	8173917	+	918.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024221)	promoter-TSS (NM_024221)	-825.0	NM_024221	68263.0	Mm.301527	NM_024221	ENSMUSG00000021748	Pdhb	2610103L06Rik|AL024199|C81408	pyruvate dehydrogenase (lipoamide) beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-31100215-4	chr3	31100101	31100301	+	969.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039090, intron 2 of 6)	intron (NM_001039090, intron 2 of 6)	5143.0	NM_001271772	20482.0	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-80706404-2	chr15	80706304	80706504	+	726.099976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4909.0	NM_144812	213988.0	Mm.131328	NM_144812	ENSMUSG00000047888	Tnrc6b	2700090M07Rik|A730065C02Rik|AI848765|D230019K20Rik	trinucleotide repeat containing 6b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-122853278-4	chr4	122853193	122853393	+	872.775024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008917, intron 5 of 8)	intron (NM_008917, intron 5 of 8)	17066.0	NM_008917	19063.0	Mm.277719	NM_008917	ENSMUSG00000028657	Ppt1	9530043G02Rik|AA960502|C77813|CLN1|D4Ertd184e|INCL|PPT	palmitoyl-protein thioesterase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80779502-4	chr7	80779405	80779605	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016721, intron 2 of 37)	intron (NM_016721, intron 2 of 37)	23826.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	6.44508548747882	6.03737327417392	6.41311382799658	5.56333929576162	6.18144972653883	6.34449914739886	6.19698830938105	6.04578685476734	0.035837427751701	0.882255555645101	0.998431161219273
Merged-chr5-134234030-2	chr5	134233930	134234130	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-4405.0	NR_104383	17969.0	Mm.425296	NM_010876	ENSMUSG00000015950	Ncf1	NCF-47K|NOXO2|Ncf-1|p47-phox|p47<phox>|p47phox	neutrophil cytosolic factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-21785216-4	chr5	21785136	21785336	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009584)	promoter-TSS (NM_009584)	-47.0	NM_011188	19181.0	Mm.2462	NM_011188	ENSMUSG00000028932	Psmc2	-	proteasome (prosome, macropain) 26S subunit, ATPase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-74462756-4	chr13	74462645	74462845	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31205.0	NM_146231	235956.0		NM_146231	ENSMUSG00000069208	Zfp825	-	zinc finger protein 825	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-60602174-4	chr9	60602093	60602293	+	955.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311095, intron 12 of 15)	intron (NM_001311095, intron 12 of 15)	-56311.0	NR_040463	100504561.0	Mm.410770	NR_040463	ENSMUSG00000111761	9230112J17Rik	-	RIKEN cDNA 9230112J17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67567296-2	chr10	67567196	67567396	+	548.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	2712.0	NR_155445	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-76856603-1	chr14	76856503	76856703	+	607.0	f1_balb.idr	Intergenic	Intergenic	96472.0	NR_153763	73883.0	Mm.489041	NR_153763		4930431P22Rik	-	RIKEN cDNA 4930431P22 gene	ncRNA	2.33454783702069	2.75831573039914	2.76740284695396	1.36523275465653	2.81996316588374	3.2476197520806	1.41316531023412	3.24495894050721	0.842373317802302	0.355255994371835	0.853664850644233
Merged-chr11-95822283-2	chr11	95822183	95822383	+	868.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2217.0	NM_153104	237928.0	Mm.133075	NM_153104	ENSMUSG00000050860	Phospho1	D11Moh36|Phospo1	phosphatase, orphan 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-52603881-4	chr12	52603778	52603978	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	U6|snRNA|snRNA	-1556.0	NR_045910	73278.0	Mm.396209	NR_045910	ENSMUSG00000100315	1700031P21Rik	-	RIKEN cDNA 1700031P21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-81499625-2	chr17	81499525	81499725	+	584.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 2 of 8)	intron (NR_104580, intron 2 of 8)	238762.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-34312256-4	chr1	34312084	34312284	+	757.200012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	121015.0	NR_039562	100628580.0		NR_039562	ENSMUSG00000092852	Mir5103	mir-5103|mmu-mir-5103|mu-mir-5103	microRNA 5103	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-37320243-4	chr10	37320129	37320329	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-181303.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-169089282-1	chr2	169089182	169089382	+	797.0	f0_balb.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	111013.0	NR_040326	75508.0	Mm.271256	NR_040326	ENSMUSG00000086348	1700017J07Rik	-	RIKEN cDNA 1700017J07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-69882393-2	chr8	69882238	69882438	+	766.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_026818, exon 8 of 8)	exon (NM_026818, exon 8 of 8)	5054.0	NM_026818	68709.0	Mm.334584	NM_026818	ENSMUSG00000044006	Cilp2	1110031K21Rik|AA407300|CLIP-2	cartilage intermediate layer protein 2	protein-coding	0.336599895378066	-0.0167925886513832	-0.0219640503304258	-0.0259512121823967	0.530194418438926	-0.0156262606024372	-0.0208238095403385	0.601573074398599	1.84517549643814	0.419916682137427	1
Merged-chr7-45536227-4	chr7	45536127	45536327	+	950.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_148927, intron 6 of 19)	RMER16_Mm|LTR|ERVK	9897.0	NM_148927	69217.0	Mm.274158	NM_148927	ENSMUSG00000040428	Plekha4	2410005C22Rik|C88169|Pepp1	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 4	protein-coding	2.74061665874402	3.26842275687827	3.07278150578684	1.94422555014463	2.93263562563274	3.82625553619539	2.02223999226847	1.95511554401502	0.14861500917165	0.853677482772136	0.998431161219273
Merged-chr15-76240731-2	chr15	76240631	76240831	+	641.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001163575, exon 8 of 11)	exon (NM_001163575, exon 8 of 11)	2709.0	NM_001163576	671535.0	Mm.373750	NM_001163575	ENSMUSG00000063268	Parp10	-	poly (ADP-ribose) polymerase family, member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-121228686-2	chr6	121228586	121228786	+	735.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17220.0	NM_011909	24110.0	Mm.326911	NM_011909	ENSMUSG00000030107	Usp18	1110058H21Rik|AW047653|UBP43|Ubp15	ubiquitin specific peptidase 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135182800-2	chr5	135182700	135182900	+	605.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_009745)	TTS (NM_009745)	-4523.0	NM_011714	22385.0	Mm.40331	NM_011714	ENSMUSG00000002748	Baz1b	C87820|WSTF|Wbscr9	bromodomain adjacent to zinc finger domain, 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-61656712-3	chr2	61656635	61656835	+	592.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-54959.0	NM_021526	59029.0	Mm.218198	NM_021526	ENSMUSG00000026914	Psmd14	2610312C03Rik|3200001M20Rik|AA986732|Pad1|Poh1|rpm11	proteasome (prosome, macropain) 26S subunit, non-ATPase, 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-27708663-4	chr15	27708557	27708757	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27115.0	NM_001242423	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-22438890-3	chr16	22438815	22439015	+	958.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358428)	promoter-TSS (NM_001358428)	-547.0	NM_001358428	104156.0	Mm.155708	NM_023794	ENSMUSG00000013089	Etv5	1110005E01Rik|8430401F14Rik|ERM	ets variant 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-46458632-3	chr4	46458524	46458724	+	780.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130889, intron 1 of 6)	intron (NM_130889, intron 1 of 6)	7698.0	NM_130889	67628.0	Mm.263913	NM_130889	ENSMUSG00000028333	Anp32b	2410015B15Rik|PAL31|PHAPI2a|Ssp29	acidic (leucine-rich) nuclear phosphoprotein 32 family, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-92651142-4	chr13	92651033	92651233	+	977.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172588, intron 1 of 11)	MIRb|SINE|MIR	39995.0	NM_172588	218442.0	Mm.297970	NM_172588	ENSMUSG00000021703	Serinc5	A130038L21Rik|AIGP3|C86123|TPO1	serine incorporator 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-4920525-4	chr18	4920421	4920621	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	108035.0	NR_045881	100038439.0	Mm.387569	NR_045881	ENSMUSG00000097043	Gm10556	-	predicted gene 10556	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-103424386-2	chr12	103424286	103424486	+	769.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_020494, exon 2 of 9)	exon (NM_020494, exon 2 of 9)	1394.0	NM_001159502	27225.0	Mm.3935	NM_020494	ENSMUSG00000041645	Ddx24	1700055J08Rik|2510027P10Rik|AI649272	DEAD (Asp-Glu-Ala-Asp) box polypeptide 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95680898-2	chr3	95680798	95680998	+	586.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_144899, exon 11 of 18)	exon (NM_144899, exon 11 of 18)	7019.0	NM_144899	229595.0	Mm.490574	NM_144899	ENSMUSG00000015850	Adamtsl4	ADAMTSL-4|Tsrc1	ADAMTS-like 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-53925611-4	chr10	53925513	53925713	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008548, intron 8 of 12)	intron (NM_008548, intron 8 of 12)	150183.0	NM_008548	17155.0	Mm.117294	NM_008548	ENSMUSG00000003746	Man1a	Man1a1|PCR1	mannosidase 1, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-43903019-3	chr1	43902915	43903115	+	903.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30979.0	NM_001310540	22019.0	Mm.401675	NM_009418	ENSMUSG00000041763	Tpp2	TPP-2|TppII	tripeptidyl peptidase II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-125359795-2	chr5	125359695	125359895	+	618.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18701.0	NM_001205083	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-80466835-2	chr18	80466735	80466935	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026295, intron 1 of 12)	B1_Mus1|SINE|Alu	2832.0	NM_026295	67655.0	Mm.312893	NM_026295	ENSMUSG00000033323	Ctdp1	4930563P03Rik|AW553592	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1	protein-coding	0.497191759174886	0.236987945965141	1.11131437000128	0.224231886499333	0.723313120601229	0.238602794037612	0.580525962140904	0.225206641477227	-0.695487239730556	0.717919546601463	1
Merged-chr14-31166260-4	chr14	31166192	31166392	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138672, intron 1 of 68)	intron (NM_138672, intron 1 of 68)	2349.0	NM_138672	192187.0	Mm.220821	NM_138672	ENSMUSG00000042286	Stab1	FEEL-1|FELE-1|MFEEL-1|MS-1|STAB-1|mKIAA0246	stabilin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-62883807-1	chr14	62883707	62883907	+	688.0	f1_balb.idr	intron (NM_175546, intron 1 of 11)	intron (NM_175546, intron 1 of 11)	18265.0	NR_105860	102465311.0		NR_105860	ENSMUSG00000098858	Mir6541	Gm27311|mmu-mir-6541	microRNA 6541	ncRNA	0.183787061995258	0.287712983082898	-0.0738479514771914	-0.0778927059803875	-0.0836122801880698	0.66717920252375	0.109254127219158	-0.0771859478251057	0.842181702726855	0.695837397358136	1
Merged-chr2-90508793-2	chr2	90508693	90508893	+	789.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	B1_Mur3|SINE|Alu	-29619.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120117073-3	chr8	120116953	120117153	+	922.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172286, intron 1 of 12)	L2a|LINE|L2	2901.0	NM_001163761	234797.0	Mm.101958	NM_172286	ENSMUSG00000031824	6430548M08Rik	AW049007|Kiaa0513|mKIAA0513	RIKEN cDNA 6430548M08 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-18595053-3	chr19	18594958	18595158	+	840.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017375, intron 3 of 9)	L1MC5|LINE|L1	36755.0	NM_017375	20409.0	Mm.172222	NM_017375	ENSMUSG00000024725	Ostf1	C78236|SH3P2|Sh3d3	osteoclast stimulating factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44416856-2	chr9	44416756	44416956	+	585.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_151776, intron 3 of 10)	B2_Mm1a|SINE|B2	1213.0	NR_151776	382073.0	Mm.259573	NM_201372	ENSMUSG00000043923	Ccdc84	D630044F24Rik|Gm1114	coiled-coil domain containing 84	protein-coding	0.1606566392745	0.613958950944326	0.396666933514714	0.173289582289435	0.162554621358911	0.622808397854207	1.42745487904316	0.174602236835975	2.00638598885823	0.291891042937768	1
Merged-chr14-107171338-2	chr14	107171238	107171438	+	797.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus4|LINE|L1	-684818.0	NR_045938	73631.0	Mm.48862	NR_045938	ENSMUSG00000099794	1700128A07Rik	-	RIKEN cDNA 1700128A07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-97716706-3	chr1	97716621	97716821	+	647.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173760, intron 25 of 27)	intron (NM_173760, intron 25 of 27)	53371.0	NM_173760	227399.0	Mm.220817	NM_173760	ENSMUSG00000040648	Ppip5k2	AW555814|Cfap160|D330021B20|Hisppd1|Vip2|mKIAA0433	diphosphoinositol pentakisphosphate kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117146778-2	chr10	117146678	117146878	+	820.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_177798, intron 1 of 9)	B4A|SINE|B4	1696.0	NM_177798	327826.0	Mm.135965	NM_177798	ENSMUSG00000020170	Frs2	4732458E18|C330018A15Rik|Frs2alpha|SNT1	fibroblast growth factor receptor substrate 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-66915599-4	chr9	66915494	66915694	+	992.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	4111.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150397475-4	chr4	150397382	150397582	+	952.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 1 of 22)	intron (NM_001085492, intron 1 of 22)	115566.0	NM_001085492	68703.0	Mm.291274	NM_001085492	ENSMUSG00000039852	Rere	1110033A15Rik|AI414665|ARG|ARP|ATN1L|AW742570|Atr2|DNB1|eye<m03Jus>|eyes3|mKIAA0458	arginine glutamic acid dipeptide (RE) repeats	protein-coding	-0.852656780069401	-0.841854650010035	-0.396291574298868	-0.42834869531677	-0.85210059224155	-0.839127069955992	-0.846002326517923	-0.848517216391398	-3.01300417742764	0.315051969844007	1
Merged-chr4-4791377-3	chr4	4791265	4791465	+	769.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177730, intron 1 of 4)	intron (NM_177730, intron 1 of 4)	1941.0	NM_177730	242291.0	Mm.218889	NM_177730	ENSMUSG00000066324	Impad1	1110001C20Rik|AA408880|AI451589|AL022796|B230207P20|Jaws|gPAPP	inositol monophosphatase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-87507244-2	chr3	87507144	87507344	+	731.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18334.0	NM_001083318	27049.0	Mm.219460	NM_012051	ENSMUSG00000003382	Etv3	AI414410|METS|Pe1	ets variant 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-146457350-2	chr4	146457250	146457450	+	658.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085522, intron 1 of 3)	RMER17C-int|LTR|ERVK	8320.0	NM_001085522	433791.0	Mm.276881	NM_001085522	ENSMUSG00000070605	Zfp992	Gm13251	zinc finger protein 992	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-41409444-2	chr3	41409344	41409544	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	83755.0	NR_040385	78706.0	Mm.366094	NR_040385	ENSMUSG00000097639	Platr4	C430002E04Rik	pluripotency associated transcript 4	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105983638-4	chr8	105983542	105983742	+	919.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4223.0	NM_027960	71854.0	Mm.173395	NM_027960	ENSMUSG00000031898	Dpep3	1700018F16Rik|AI507039|MBD-3|MLZ-136	dipeptidase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-3706611-3	chr7	3706407	3706607	+	763.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029767, intron 4 of 4)	intron (NM_029767, intron 4 of 4)	2466.0	NM_029767	76846.0	Mm.13944	NM_029767	ENSMUSG00000006333	Rps9	3010033P07Rik|AL022771|AL022885	ribosomal protein S9	protein-coding	-0.0954693458998263	-0.0816798457719032	0.0812600767473731	0.197988416694107	0.267489050048686	-0.0806553845044049	-0.0852157161346071	0.516047054570988	1.31693722308364	0.549239117125692	1
Merged-chr8-70864111-4	chr8	70864036	70864236	+	792.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7128.0	NM_032397	84036.0	Mm.32074	NM_032397	ENSMUSG00000002908	Kcnn1	AI854248|KCa2.1|SK1	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1	protein-coding	-0.193187865639129	-0.175418137125949	-0.181203440680025	-0.185690757640179	0.510871527750699	-0.174118723133208	-0.179924498839554	0.678611275648726	4.01664447122505	0.0953670267200347	1
Merged-chr6-18845847-5	chr6	18845763	18845963	+	765.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MMVL30-int|LTR|ERV1	-2772.0	NM_133939	76522.0	Mm.275158	NM_133939	ENSMUSG00000044155	Lsm8	2010003I05Rik|AW214405|Naa38	LSM8 homolog, U6 small nuclear RNA associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-119233747-3	chr4	119233634	119233834	+	934.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001042411)	promoter-TSS (NM_001042411)	-95.0	NM_001042411	56401.0	Mm.27961	NM_019782	ENSMUSG00000028641	P3h1	2410024C15Rik|Gros1|Lepre1	prolyl 3-hydroxylase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-60478159-3	chr9	60478062	60478262	+	701.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040426, intron 3 of 17)	intron (NM_001040426, intron 3 of 17)	32873.0	NM_001040426	207596.0	Mm.28791	NM_172444	ENSMUSG00000032289	Thsd4	ADAMTSL-6|ADAMTSL6|AI585901|Adamtsl4|B230114P05Rik	thrombospondin, type I, domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5514563-2	chr17	5514463	5514663	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	21963.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100493331-4	chr7	100493211	100493411	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011671)	promoter-TSS (NM_011671)	-47.0	NM_011671	22228.0	Mm.171378	NM_011671	ENSMUSG00000033685	Ucp2	Slc25a8|UCP 2|UCPH	uncoupling protein 2 (mitochondrial, proton carrier)	protein-coding	6.28683394596474	5.77147144136413	6.30106439108936	5.78666770890701	6.23530236448164	5.46607781301746	5.98226943601671	6.0495705166425	-0.104491554590347	0.680477893740994	0.995506882643648
Merged-chr1-74387034-4	chr1	74386931	74387131	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_013612)	TTS (NM_013612)	-4578.0	NM_153088	227292.0	Mm.165042	NM_153088	ENSMUSG00000026176	Ctdsp1	GIP|NLIIF|Nif3|SCP1	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-17718030-4	chr16	17717927	17718127	+	853.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285886, intron 1 of 16)	intron (NM_001285886, intron 1 of 16)	4873.0	NM_001285886	94112.0	Mm.208970	NM_033609	ENSMUSG00000012114	Med15	A230074L19Rik|AW536074|Pcqap|mPcqap	mediator complex subunit 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-87971356-3	chr3	87971224	87971424	+	784.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_016701, exon 1 of 4)	exon (NM_016701, exon 1 of 4)	231.0	NM_016701	18008.0	Mm.331129	NM_016701	ENSMUSG00000004891	Nes	AA166324|C78523|ESTM46|Ifaprc2|Marc2|RC2	nestin	protein-coding	1.71826709914165	1.25762221078389	1.65817022232476	1.49375328779913	1.64329207193434	1.44381199650322	1.67113157115588	1.20746813601069	-0.148603501154131	0.894691702542999	0.998431161219273
Merged-chr11-50245435-4	chr11	50245332	50245532	+	945.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6900.0	NR_132733	17001.0	Mm.245151	NM_008521	ENSMUSG00000020377	Ltc4s	-	leukotriene C4 synthase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-80768187-4	chr17	80768069	80768269	+	930.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40144.0	NM_001290345	225028.0	Mm.311948	NM_001081357	ENSMUSG00000024242	Map4k3	4833416M01Rik|4833416M07Rik|9530052P13Rik|Glk|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1	mitogen-activated protein kinase kinase kinase kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35046160-2	chr17	35046060	35046260	+	582.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013600, intron 1 of 23)	intron (NM_013600, intron 1 of 23)	462.0	NM_013600	17687.0	Mm.24192	NM_013600	ENSMUSG00000007035	Msh5	Mut5	mutS homolog 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-146120343-4	chr6	146120254	146120454	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019923, intron 55 of 56)	intron (NM_019923, intron 55 of 56)	186232.0	NM_010656	16651.0	Mm.49689	NM_010656	ENSMUSG00000030255	Sspn	Krag	sarcospan	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-30905204-1	chr1	30905104	30905304	+	579.5	f0_balb.idr	Intergenic	Intergenic	-41948.0	NM_001081080	213109.0	Mm.194486	NM_025871	ENSMUSG00000048874	Phf3	2310061N19Rik	PHD finger protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-92126979-2	chr5	92126891	92127091	+	688.0	f0_balb.idr|f1_balb.idr	intron (NM_001359197, intron 1 of 10)	intron (NM_001359197, intron 1 of 10)	10734.0	NM_001359197	23881.0	Mm.290530	NM_011816	ENSMUSG00000029405	G3bp2	AA409541|E430034L04Rik|G3BP|mKIAA0660	GTPase activating protein (SH3 domain) binding protein 2	protein-coding	0.721296666639117	0.774113544670775	1.80426665354054	0.744018326608606	1.46089147516782	0.77784252336529	1.82163176548035	1.75316996147633	1.34678692226342	0.371656548239305	0.864510444653005
Merged-chr12-83703010-2	chr12	83702910	83703110	+	747.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001362271, intron 3 of 11)	intron (NM_001362271, intron 3 of 11)	14447.0	NM_008943	19164.0	Mm.998	NM_008943	ENSMUSG00000019969	Psen1	Ad3h|PS-1|PS1|S182	presenilin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-77761598-1	chr1	77761498	77761698	+	818.799988	f0_c57.idr	Intergenic	Intergenic	-246510.0	NM_007936	13838.0	Mm.400747	NM_007936	ENSMUSG00000026235	Epha4	2900005C20Rik|AI385584|Cek8|Hek8|Sek|Sek1|Tyro1|rb	Eph receptor A4	protein-coding	1.91308888631269	1.99485540250571	1.74516249736427	3.1507147377453	2.16810098047516	2.17393323703335	2.66353092784991	1.24529897349743	-0.423282606933391	0.664764293927016	0.992236411328325
Merged-chr7-19752817-2	chr7	19752717	19752917	+	630.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-3244.0	NM_001159724	19294.0	Mm.4341	NM_008990	ENSMUSG00000062300	Nectin2	AI325026|AI987993|Cd112|MPH|Pvr|Pvrl2|Pvs|nectin-2	nectin cell adhesion molecule 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-145242937-4	chr4	145242861	145243061	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011610, intron 1 of 9)	intron (NM_011610, intron 1 of 9)	3909.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-74773289-4	chr1	74773205	74773405	+	999.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009526, intron 1 of 3)	intron (NM_009526, intron 1 of 3)	1413.0	NM_009526	22420.0	Mm.268282	NM_009526	ENSMUSG00000033227	Wnt6	AA409270|Wnt-6	wingless-type MMTV integration site family, member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128132226-2	chr10	128132126	128132326	+	680.625	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_019711, exon 13 of 13)	3' UTR (NM_019711, exon 13 of 13)	39443.0	NM_054078	116848.0	Mm.252213	NM_054078	ENSMUSG00000040054	Baz2a	AA415431|C030005G16Rik|C78388|Tip5|Walp3|mKIAA0314	bromodomain adjacent to zinc finger domain, 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-130819022-4	chr7	130818933	130819133	+	941.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081038, exon 12 of 16)	exon (NM_001081038, exon 12 of 16)	44964.0	NM_001081038	330660.0	Mm.271550	NM_001081038	ENSMUSG00000040298	Btbd16	E330040A16Rik	BTB (POZ) domain containing 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-104131610-1	chr12	104131510	104131710	+	606.0	f0_balb.idr	intron (NM_173024, intron 2 of 4)	intron (NM_173024, intron 2 of 4)	3614.0	NM_173024	271047.0	Mm.120265	NM_173024	ENSMUSG00000066364	Serpina3b	6A1|A030003A19Rik	serine (or cysteine) peptidase inhibitor, clade A, member 3B	protein-coding	2.63323237494881	3.67237769673652	1.3854525752103	2.89764148815243	3.29620724298112	2.04291166284418	1.39909096921319	4.26753782773408	0.516215513036282	0.739861987175255	0.998431161219273
Merged-chr11-74438859-2	chr11	74438759	74438959	+	739.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001015046, intron 4 of 24)	intron (NM_001015046, intron 4 of 24)	74188.0	NM_001011851	258153.0	Mm.376124	NM_001011851	ENSMUSG00000058275	Olfr412	MOR127-5P	olfactory receptor 412	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128747818-4	chr10	128747723	128747923	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253704)	promoter-TSS (NM_001253704)	-56.0	NM_030100	78428.0	Mm.27358	NM_030100	ENSMUSG00000064030	Pym1	A030010B05Rik|Pym|Wibg	PYM homolog 1, exon junction complex associated factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-35826486-4	chr8	35826421	35826621	+	780.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027998)	promoter-TSS (NM_027998)	38.0	NM_027998	71908.0	Mm.37817	NM_027998	ENSMUSG00000055976	Cldn23	2310014B08Rik	claudin 23	protein-coding	-1.84379369717701	-1.81336219421491	-1.82256493189016	-1.83012433462039	-1.84165746193693	-1.66656684606785	-1.82048163379875	-1.68397012864323	1.53670164110226	0.662623097221823	1
Merged-chr5-118413570-4	chr5	118413469	118413669	+	999.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J1|LTR|ERVL-MaLR	-147150.0	NM_001347445	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-109876115-6	chr9	109876042	109876242	+	905.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007658, exon 1 of 15)	exon (NM_007658, exon 1 of 15)	563.0	NM_007658	12530.0	Mm.307103	NM_007658	ENSMUSG00000032477	Cdc25a	D9Ertd393e	cell division cycle 25A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-87755098-4	chr16	87754996	87755196	+	899.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56142.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-98534690-4	chr7	98534603	98534803	+	881.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40481.0	NM_001113379	434215.0	Mm.323057	NM_001113379	ENSMUSG00000090958	Lrrc32	AI426318|D11S833Eh|D7H11S833E|EG434215|Garp	leucine rich repeat containing 32	protein-coding	3.18074932056994	3.38938253588645	2.79139226800192	3.55971244510799	1.10941909547322	1.59569368083885	1.53256478835417	1.17887176454865	-4.94032493981727	2.13743093797969e-05	0.00085859971514781
Merged-chr9-120885194-3	chr9	120885099	120885299	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30051.0	NR_040742	76402.0	Mm.436588	NR_040742	ENSMUSG00000100146	1700020M21Rik	-	RIKEN cDNA 1700020M21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-93795015-2	chr16	93794915	93795115	+	693.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_151466)	promoter-TSS (NR_151466)	-114.0	NR_151466	102633000.0	Mm.443436	NR_151466		2310043M15Rik	-	RIKEN cDNA 2310043M15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-84183000-3	chr1	84182893	84183093	+	799.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003948, intron 1 of 2)	intron (NM_001003948, intron 1 of 2)	35968.0	NR_105771	102465181.0		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-170959976-4	chr1	170959884	170960084	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010187)	TTS (NM_010187)	16087.0	NM_010187	14130.0	Mm.425062	NM_010187	ENSMUSG00000026656	Fcgr2b	AI528646|CD32|F630109E10Rik|Fc[g]RII|FcgRII|Fcgr2|Fcgr2a|Fcr-2|Fcr-3|Ly-17|Ly-m20|LyM-1|Lym-1|fcRII	Fc receptor, IgG, low affinity IIb	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-91757570-3	chr1	91757444	91757644	+	812.900024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43917.0	NM_007855	13345.0	Mm.9474	NM_007855	ENSMUSG00000007805	Twist2	Dermo1|bHLHa39	twist basic helix-loop-helix transcription factor 2	protein-coding	0.378893302605228	0.410214984991296	0.776847352136255	0.392210023878669	1.5474269727756	0.412474032558251	0.933146192520961	0.890465797965268	2.96312725728722	0.10260059232213	1
Merged-chr11-115413383-4	chr11	115413293	115413493	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001347645)	TTS (NM_001347645)	6526.0	NM_027862	71679.0	Mm.371641	NM_027862	ENSMUSG00000034566	Atp5h	0610009D10Rik	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit D	protein-coding	3.77731748099186	4.47762252305263	4.33666290626289	4.55702883391455	4.3773487579592	4.6157340200784	3.98430183387108	4.69906236624647	0.172709608217033	0.671806491249279	0.994295938730731
Merged-chr9-53667507-4	chr9	53667409	53667609	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027807)	promoter-TSS (NM_027807)	-2.0	NM_027807	75717.0	Mm.218910	NM_027807	ENSMUSG00000032030	Cul5	4921514I20Rik|8430423K24Rik|AI852817|C030032G03Rik|C330021I08Rik|VACM-1|VACM1	cullin 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-143269444-3	chr5	143269346	143269546	+	724.527771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017467, intron 1 of 6)	intron (NM_017467, intron 1 of 6)	576.0	NM_017467	54201.0	Mm.6666	NM_017467	ENSMUSG00000046658	Zfp316	Emzf1|Mzf3|Znf316	zinc finger protein 316	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46819954-2	chr8	46819854	46820054	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008391, intron 6 of 8)	MT2B1|LTR|ERVL	80209.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-3225911-2	chr8	3225811	3226011	+	657.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001330056, intron 2 of 21)	intron (NM_001330056, intron 2 of 21)	53706.0	NM_010568	16337.0	Mm.268003	NM_010568	ENSMUSG00000005534	Insr	4932439J01Rik|CD220|D630014A15Rik|IR|IR-A|IR-B	insulin receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-21753806-5	chr13	21753599	21753799	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178201)	promoter-TSS (NM_178201)	213.0	NM_178183	319169.0	Mm.370338	NM_178183	ENSMUSG00000063021	Hist1h2ak	-	histone cluster 1, H2ak	protein-coding	2.14318970178997	2.18651762281701	1.47307665989692	2.16142178121033	2.47377448868919	2.43106740355493	1.23806520763982	1.63540435320624	0.094207758449875	0.92660787186756	0.998431161219273
Merged-chr5-88519452-4	chr5	88519352	88519552	+	807.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_152839)	TTS (NM_152839)	8445.0	NM_152839	16069.0	Mm.1192	NM_152839	ENSMUSG00000067149	Jchain	9530090F24Rik|AI323815|Igj|Jch	immunoglobulin joining chain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-189868253-2	chr1	189868153	189868353	+	713.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008976, intron 18 of 18)	intron (NM_008976, intron 18 of 18)	54038.0	NM_026796	226830.0	Mm.156895	NM_026796	ENSMUSG00000026603	Smyd2	1110020E07Rik|4930402C15|KMT3C|Zmynd14	SET and MYND domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-57019759-2	chr13	57019653	57019853	+	648.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-123964.0	NM_001302373	26946.0	Mm.62409	NM_012035	ENSMUSG00000021541	Trpc7	TRP7|Trrp8	transient receptor potential cation channel, subfamily C, member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70487210-1	chr8	70487110	70487310	+	643.0	f1_balb.idr	exon (NM_182991, exon 1 of 8)	exon (NM_182991, exon 1 of 8)	148.0	NM_182991	67937.0	Mm.23002	NM_182991	ENSMUSG00000035964	Tmem59l	5330410G16Rik	transmembrane protein 59-like	protein-coding	-1.29633872064033	-1.26720680975202	-1.27768629845203	-1.28629446248818	-0.70879630402184	-1.2649358608345	-1.2753139719142	-1.28475360524138	2.50884260628271	0.468217847016783	1
Merged-chr7-145280782-2	chr7	145280682	145280882	+	708.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_132643, intron 1 of 22)	intron (NR_132643, intron 1 of 22)	3229.0	NR_132644	233979.0	Mm.102235	NM_146206	ENSMUSG00000048677	Tpcn2	D830047E22Rik|Gm35086	two pore segment channel 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-117478294-3	chr4	117478177	117478377	+	955.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025739, intron 2 of 14)	intron (NM_025739, intron 2 of 14)	18775.0	NM_025739	66743.0	Mm.318331	NM_025739	ENSMUSG00000028677	Rnf220	4732477A13|4931406I20Rik|5730503K05Rik|AV302541	ring finger protein 220	protein-coding	1.32300792792854	1.27487195335735	1.44051371991123	0.958507556066004	2.04231871589829	2.79000413355157	1.45249312764784	1.71925148533697	2.5966744216893	0.0229951064906268	0.19744414671365
Merged-chr10-16714705-1	chr10	16714605	16714805	+	562.0	f0_balb.idr	Intergenic	Intergenic	381077.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97368301-3	chr6	97368206	97368406	+	811.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 6 of 23)	intron (NM_145148, intron 6 of 23)	90980.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118574674-2	chr11	118574574	118574774	+	743.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285436, intron 3 of 13)	intron (NM_001285436, intron 3 of 13)	97842.0	NM_001359368	217364.0	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-128899499-2	chr6	128899399	128899599	+	702.416687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8375.0	NM_001254946	232406.0	Mm.30745	NM_001254946	ENSMUSG00000090164	BC035044	-	cDNA sequence BC035044	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116691437-2	chr11	116691337	116691537	+	741.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_009180, intron 1 of 8)	intron (NM_009180, intron 1 of 8)	3223.0	NM_009180	20446.0	Mm.3947	NM_009180	ENSMUSG00000057286	St6galnac2	II|ST6GalNAc|Siat7|Siat7b	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-84796391-3	chr6	84796241	84796441	+	868.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177077, intron 18 of 21)	intron (NM_177077, intron 18 of 21)	-202433.0	NM_001177713	232174.0	Mm.255246	NM_175475	ENSMUSG00000063415	Cyp26b1	CP26|P450RAI-2	cytochrome P450, family 26, subfamily b, polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-46255432-2	chr17	46255332	46255532	+	901.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111142, intron 2 of 5)	intron (NM_001111142, intron 2 of 5)	1267.0	NM_001111142	224813.0	Mm.70999	NM_001111142	ENSMUSG00000071073	Lrrc73	Gm88	leucine rich repeat containing 73	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-94274126-1	chr6	94274026	94274226	+	885.0	f0_balb.idr	intron (NM_001029850, intron 1 of 23)	intron (NM_001029850, intron 1 of 23)	9791.0	NM_010367	14924.0	Mm.217216	NM_010367	ENSMUSG00000045095	Magi1	AIP3|BAP1|Baiap1|Gukmi1|MAGI1c|Magi-1|TNRC19|WWP3|mKIAA4129	membrane associated guanylate kinase, WW and PDZ domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-108691562-4	chr9	108691454	108691654	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008924)	promoter-TSS (NM_008924)	-589.0	NM_008924	19087.0	Mm.253102	NM_008924	ENSMUSG00000032601	Prkar2a	1110061A24Rik|AI317181|AI836829|RII(alpha)	protein kinase, cAMP dependent regulatory, type II alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-119926658-4	chr8	119926567	119926767	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009462, intron 1 of 13)	B1_Mur4|SINE|Alu	16307.0	NM_001310630	22224.0	Mm.256910	NM_009462	ENSMUSG00000031826	Usp10	2610014N07Rik|UBPO|Uchrp|mKIAA0190	ubiquitin specific peptidase 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-100536890-4	chr5	100536795	100536995	+	790.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359204, intron 7 of 10)	Tigger17a|DNA|TcMar-Tigger	18586.0	NM_001359204	26891.0	Mm.957	NM_012001	ENSMUSG00000035297	Cops4	AW208976|D5Ertd774e|SGN4	COP9 signalosome subunit 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-14469187-2	chr19	14469087	14469287	+	594.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001302951, intron 8 of 19)	B4|SINE|B4	-30681.0	NR_003027	19862.0		NR_003027	ENSMUSG00000095132	Rnu6	-	U6 small nuclear RNA	snRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-154092468-2	chr4	154092368	154092568	+	555.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011642, intron 3 of 13)	intron (NM_011642, intron 3 of 13)	4705.0	NM_001126330	22062.0	Mm.78015	NM_011642	ENSMUSG00000029026	Trp73	TAp73|Tp73|deltaNp73|p73	transformation related protein 73	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-113432182-2	chr2	113432082	113432282	+	564.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010230, intron 3 of 19)	intron (NM_010230, intron 3 of 19)	-8882.0	NM_001285459	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-61577386-2	chr11	61577286	61577486	+	846.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252188, intron 1 of 10)	intron (NM_001252188, intron 1 of 10)	2301.0	NM_010148	13855.0	Mm.139695	NM_010148	ENSMUSG00000001036	Epn2	9530051D10Rik|AA536924|Ibp2	epsin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-77688002-3	chr11	77687893	77688093	+	949.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024205, intron 1 of 3)	intron (NM_001024205, intron 1 of 3)	1854.0	NM_001024205	68564.0	Mm.428996	NM_001024205	ENSMUSG00000037857	Nufip2	1110001M19Rik|9530056D24Rik|AI256692|AI461731|PIG1|mKIAA1321	nuclear fragile X mental retardation protein interacting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111434514-2	chr12	111434414	111434614	+	783.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8147.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-60114412-3	chr11	60114302	60114502	+	813.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009021, intron 1 of 5)	intron (NM_009021, intron 1 of 5)	9389.0	NM_009021	19377.0	Mm.296366	NM_009021	ENSMUSG00000062115	Rai1	Gt1	retinoic acid induced 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116076053-1	chr11	116075953	116076153	+	543.0	f1_c57bl6.idr	intron (NM_001009573, intron 6 of 32)	intron (NM_001009573, intron 6 of 32)	1908.0	NM_001009573	70450.0	Mm.259460	NM_001009573	ENSMUSG00000057948	Unc13d	2610108D09Rik|Jinx|Munc13-4|mFLJ00067	unc-13 homolog D (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-70287918-4	chr10	70287815	70288015	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42639.0	NM_025807	66859.0	Mm.19325	NM_025807	ENSMUSG00000037762	Slc16a9	1200003C15Rik|4930425B13Rik|AI552636	solute carrier family 16 (monocarboxylic acid transporters), member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165399714-2	chr2	165399662	165399862	+	599.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029021, intron 1 of 2)	intron (NM_029021, intron 1 of 2)	632.0	NM_029021	74614.0	Mm.72179	NM_029021	ENSMUSG00000027670	Ocstamp	4833422F24Rik|OC-STAMP	osteoclast stimulatory transmembrane protein	protein-coding	-0.0397655026967789	0.473590214125422	-0.0285520493171683	0.602300939456231	-0.0387233804118342	-0.0218678621844683	0.440122459749002	-0.032028355081257	-1.37056409316412	0.547846149563891	1
Merged-chr2-98284556-2	chr2	98284456	98284656	+	719.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17B|LTR|ERVK	816899.0	NM_178725	241568.0	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	0.0117708902474342	0.0284248527955442	0.198988677910917	0.0187601640338911	0.283413560207211	0.0296545860302971	0.484330756541226	0.739564501979525	3.16627698580468	0.13034600447648	1
Merged-chr6-119859200-4	chr6	119859116	119859316	+	777.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	11023.0	NR_030776	67289.0	Mm.418299	NR_030776		3110021A11Rik	-	RIKEN cDNA 3110021A11 gene	ncRNA	1.51082050374046	1.18828883539099	2.64717245820221	1.38543425857594	2.52336491466078	2.08310916088602	1.43635613330615	3.04043912706031	1.28207066164831	0.221562469798309	0.713192589690604
Merged-chr7-28151932-3	chr7	28151820	28152020	+	642.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164655, intron 10 of 19)	intron (NM_001164655, intron 10 of 19)	-17828.0	NM_007991	14113.0	Mm.4595	NM_007991	ENSMUSG00000046865	Fbl	AL022665|FIB|FLRN|RNU3IP1	fibrillarin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-77463776-3	chr5	77463674	77463874	+	878.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1714.0	NR_131050	69370.0	Mm.426881	NR_131050	ENSMUSG00000107232	1700017L05Rik	-	RIKEN cDNA 1700017L05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-91729187-2	chr6	91729087	91729287	+	811.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_009320, intron 5 of 14)	intron (NM_009320, intron 5 of 14)	45120.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5603964-2	chr17	5603864	5604064	+	895.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	MLT1A|LTR|ERVL-MaLR	111364.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-24443200-1	chr7	24443100	24443300	+	1000.0	f0_balb.idr	intron (NM_199013, intron 1 of 2)	intron (NM_199013, intron 1 of 2)	2482.0	NM_199013	210145.0	Mm.33811	NM_199013	ENSMUSG00000062028	Irgc1	F630044M05Rik|Gm1102|Gm474|Ifgge|Iigp5|Irgc	immunity-related GTPase family, cinema 1	protein-coding	-1.56355737717652	-1.81244775989375	-1.82128546162293	-1.82854501295842	-1.83962066705452	-1.81053259306168	-1.81928479966835	-1.82724555674025	-1.28500227969968	0.715751224811686	1
Merged-chr10-126918484-2	chr10	126918384	126918584	+	678.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-17113.0	NM_001358970	68876.0	Mm.276769	NM_026858	ENSMUSG00000025436	Atp23	1110068E08Rik|2410012H02Rik|Xrcc6bp1	ATP23 metallopeptidase and ATP synthase assembly factor homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-25062695-2	chr8	25062595	25062795	+	732.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_031257, intron 4 of 11)	intron (NM_031257, intron 4 of 11)	-23733.0	NM_001081187	330723.0	Mm.334452	NM_001081187	ENSMUSG00000037406	Htra4	B430206E18Rik	HtrA serine peptidase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-30873849-4	chr1	30873719	30873919	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-10563.0	NM_001081080	213109.0	Mm.194486	NM_025871	ENSMUSG00000048874	Phf3	2310061N19Rik	PHD finger protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-39067160-4	chr10	39067061	39067261	+	700.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010681, intron 16 of 37)	B1F1|SINE|Alu	66739.0	NM_001359442	66337.0	Mm.45187	NM_183254	ENSMUSG00000051736	Fam229b	1700025K23Rik	family with sequence similarity 229, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-94753540-2	chr11	94753440	94753640	+	817.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7642.0	NM_001105561	217122.0	Mm.24063	NM_183153		Gm11545	A430060F13Rik|C86086	predicted gene 11545	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-50052856-3	chr18	50052742	50052942	+	757.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134131)	promoter-TSS (NM_134131)	-440.0	NM_134131	106869.0	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27648767-1	chr17	27648667	27648867	+	688.0	f1_c57bl6.idr	Intergenic	Intergenic	-6824.0	NM_011861	23969.0	Mm.4926	NM_011861	ENSMUSG00000040276	Pacsin1	A830061D09Rik|H74|mKIAA1379|syndapin	protein kinase C and casein kinase substrate in neurons 1	protein-coding	-0.315715184014022	-0.301431425295545	-0.306104359705024	-0.309714013524945	-0.163857416731201	0.448203451390281	-0.305073172069422	0.132895607020758	3.75428883522525	0.113610671366708	1
Merged-chr3-83790016-6	chr3	83789919	83790119	+	908.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	23698.0	NM_009144	20319.0	Mm.19155	NM_009144	ENSMUSG00000027996	Sfrp2	AI851596|Sdf5	secreted frizzled-related protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-31248023-4	chr9	31247912	31248112	+	975.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23389.0	NM_001101597	638580.0	Mm.373655	NM_001101597		Gm7244	EG638580	predicted gene 7244	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-104607912-2	chr11	104607812	104608012	+	762.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016780)	promoter-TSS (NM_016780)	-88.0	NM_016780	16416.0	Mm.87150	NM_016780	ENSMUSG00000020689	Itgb3	CD61|GP3A|INGRB3	integrin beta 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117385046-4	chr11	117384936	117385136	+	853.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29353.0	NR_132097	105827746.0	Mm.388009	NR_132097	ENSMUSG00000086588	Gm11729	-	predicted gene 11729	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55757074-2	chr14	55756974	55757174	+	899.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009894, intron 2 of 4)	intron (NM_009894, intron 2 of 4)	1350.0	NM_009894	12684.0	Mm.466766	NM_009894	ENSMUSG00000022219	Cideb	1110030C18Rik|AI790179|CIDE-B	cell death-inducing DNA fragmentation factor, alpha subunit-like effector B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-72587408-2	chr5	72587308	72587508	+	591.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001024147, intron 1 of 2)	CpG	142.0	NM_001024147	545758.0	Mm.332426	NM_001024147	ENSMUSG00000060204	Gm5868	EG545758	predicted gene 5868	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-80459557-2	chr8	80459457	80459657	+	833.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34488.0	NM_010369	14934.0	Mm.13123	NM_010369	ENSMUSG00000051839	Gypa	AI853584|CD235a|GPA	glycophorin A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-73140737-4	chr14	73140610	73140810	+	963.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1800.0	NM_001170694	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-39373274-4	chr2	39373180	39373380	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-146931.0	NM_024209	67857.0	Mm.389242	NM_024209	ENSMUSG00000026753	Ppp6c	2310003C10Rik|Pp6C	protein phosphatase 6, catalytic subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-66537493-4	chr6	66537415	66537615	+	915.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355624, intron 2 of 5)	intron (NM_001355624, intron 2 of 5)	2294.0	NM_001355624	56150.0	Mm.489653	NM_019499	ENSMUSG00000029910	Mad2l1	AA673185|MAD2	MAD2 mitotic arrest deficient-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-48615924-4	chr2	48615816	48616016	+	812.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-198193.0	NM_007396	11480.0	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-30696092-4	chr13	30696000	30696200	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134068, intron 3 of 7)	intron (NM_134068, intron 3 of 7)	36041.0	NM_134068	105352.0	Mm.289646	NM_134068	ENSMUSG00000069255	Dusp22	JKAP|JSP1|LMW-DSP2|MKPX	dual specificity phosphatase 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-127155079-4	chr6	127154981	127155181	+	779.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040275, intron 1 of 1)	CpG	-4033.0	NM_009829	12444.0	Mm.333406	NM_009829	ENSMUSG00000000184	Ccnd2	2600016F06Rik|AI256817|BF642806|C86853|Vin-1|Vin1|cD2	cyclin D2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-10872603-4	chr15	10872505	10872705	+	869.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TTTTTA)n|Simple_repeat|Simple_repeat	43554.0	NR_040357	100502601.0	Mm.399434	NR_040357		Gm19276	-	predicted gene, 19276	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-3035915-3	chr9	3035837	3036037	+	884.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GSAT_MM|Satellite|Satellite	2806.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122948863-4	chr8	122948734	122948934	+	801.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 2 of 12)	intron (NM_001081379, intron 2 of 12)	93450.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-156473526-1	chr1	156473426	156473626	+	907.0	f1_balb.idr	intron (NM_009230, intron 1 of 15)	intron (NM_009230, intron 1 of 15)	802.0	NM_009230	20652.0	Mm.28099	NM_009230	ENSMUSG00000026600	Soat1	8430426K15Rik|ACAT-1|AW550831|Acact|ald|hid	sterol O-acyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16582408-4	chr7	16582322	16582522	+	998.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172739, intron 1 of 6)	intron (NM_172739, intron 1 of 6)	-31402.0	NR_136928	102634559.0	Mm.421602	NR_136928	ENSMUSG00000100583	Gm29443	-	predicted gene 29443	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-119164295-3	chr12	119164206	119164406	+	892.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177290, intron 12 of 13)	intron (NM_177290, intron 12 of 13)	73970.0	NM_177290	320910.0	Mm.217000	NM_177290	ENSMUSG00000025321	Itgb8	4832412O06Rik	integrin beta 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27558235-2	chr17	27558135	27558335	+	806.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039356, intron 2 of 5)	intron (NM_001039356, intron 2 of 5)	1582.0	NM_001166477	111241.0	Mm.426212	NM_001166476	ENSMUSG00000078249	Hmga1b	Hmga1-rs1|Hmgi-rs1	high mobility group AT-hook 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88746444-4	chr3	88746355	88746555	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_018804, exon 4 of 4)	3' UTR (NM_018804, exon 4 of 4)	26144.0	NM_018804	229521.0	Mm.379376	NM_018804	ENSMUSG00000068923	Syt11	1500004A13Rik|3632445O20Rik|5430404N14Rik|6530420C11Rik|AI851970	synaptotagmin XI	protein-coding	4.87338492875269	4.15943859998785	5.02742901112151	4.49549898020397	5.22580567471523	4.58578633748264	4.44125560595712	4.85358781088052	0.164924574254076	0.658100807304179	0.988704682801132
Merged-chr5-135931790-2	chr5	135931690	135931890	+	588.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_018871, intron 1 of 1)	intron (NM_018871, intron 1 of 1)	2851.0	NM_018871	22628.0	Mm.233813	NM_018871	ENSMUSG00000051391	Ywhag	14-3-3gamma|D7Bwg1348e	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-106695953-4	chr1	106695849	106696049	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009741, intron 1 of 1)	ORR1F|LTR|ERVL-MaLR	18341.0	NM_009741	12043.0	Mm.257460	NM_009741	ENSMUSG00000057329	Bcl2	AW986256|Bcl-2|C430015F12Rik|D630044D05Rik|D830018M01Rik	B cell leukemia/lymphoma 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-26317231-4	chr13	26317122	26317322	+	943.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER4B|LTR|ERVK	-4816.0	NR_045933	73576.0	Mm.45473	NR_045933	ENSMUSG00000084811	1700092E19Rik	-	RIKEN cDNA 1700092E19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-20741078-4	chr11	20740980	20741180	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181411, intron 1 of 8)	CpG	476.0	NM_001290545	216549.0	Mm.356580	NM_181411	ENSMUSG00000049659	Aftph	-	aftiphilin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-73973734-4	chr17	73973616	73973816	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23520.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25280296-2	chr7	25280196	25280396	+	741.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001302811, intron 2 of 20)	intron (NM_001302811, intron 2 of 20)	-1883.0	NM_027882	71722.0	Mm.28833	NM_027882	ENSMUSG00000005442	Cic	1200010B10Rik|mKIAA0306	capicua transcriptional repressor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-57537064-2	chr6	57536964	57537164	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME3A|LINE|L1	-1638.0	NM_175523	243382.0	Mm.396893	NM_175523	ENSMUSG00000037826	Ppm1k	2900063A19Rik|A930026L03Rik|PP2Cm	protein phosphatase 1K (PP2C domain containing)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-24490682-4	chr10	24490576	24490776	+	959.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-104766.0	NM_010217	14219.0	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-92688299-2	chr5	92688199	92688399	+	596.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_015756, intron 1 of 10)	intron (NM_015756, intron 1 of 10)	4864.0	NM_015756	27428.0	Mm.46014	NM_015756	ENSMUSG00000029381	Shroom3	AL022960|D5Ertd287e|Shrm|Shrm3	shroom family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-56617660-2	chr6	56617560	56617760	+	661.700012	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	87039.0	NM_025520	66373.0	Mm.25642	NM_025520	ENSMUSG00000091625	Lsm5	2010208O10Rik|2310034K10Rik	LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-37046863-3	chr11	37046764	37046964	+	731.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-102623.0	NM_011856	23964.0	Mm.439889	NM_011856	ENSMUSG00000049336	Tenm2	Odz2|Odz3|Ten-2|Ten-m2	teneurin transmembrane protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-102502600-4	chr5	102502521	102502721	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146161, intron 1 of 8)	intron (NM_146161, intron 1 of 8)	21230.0	NM_029270	231532.0	Mm.440191	NM_029270	ENSMUSG00000057315	Arhgap24	0610025G21Rik	Rho GTPase activating protein 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-69417359-4	chr17	69417302	69417502	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_026848, exon 1 of 1)	non-coding (NR_026848, exon 1 of 1)	955.0	NR_026848	77533.0	Mm.266592	NR_026848		C030034I22Rik	-	RIKEN cDNA C030034I22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-170351699-4	chr2	170351560	170351760	+	828.104187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029815, intron 11 of 12)	intron (NM_029815, intron 11 of 12)	-4701.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-86078603-4	chr12	86078502	86078702	+	958.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_009368, exon 1 of 7)	5' UTR (NM_009368, exon 1 of 7)	439.0	NM_009368	21809.0	Mm.3992	NM_009368	ENSMUSG00000021253	Tgfb3	TGF-beta-3|Tgfb-3	transforming growth factor, beta 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-50528043-1	chr9	50527943	50528143	+	707.333313	f0_balb.idr	intron (NM_011220, intron 1 of 5)	intron (NM_011220, intron 1 of 5)	598.0	NM_011220	19286.0	Mm.35856	NM_011220	ENSMUSG00000032067	Pts	PTPS	6-pyruvoyl-tetrahydropterin synthase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-73539200-5	chr7	73539053	73539253	+	938.320007	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_037569)	TTS (NR_037569)	2593.0	NM_001081345	244059.0	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-81104038-1	chr13	81103938	81104138	+	632.0	f0_balb.idr	intron (NM_054053, intron 88 of 89)	intron (NM_054053, intron 88 of 89)	139964.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99143395-4	chr7	99143273	99143473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2229.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	5.89731094557786	5.65524129594734	6.16029846830821	5.52314397639449	6.32405980577325	5.72040326262613	6.12287839638583	6.32734787666663	0.352417033509905	0.156849867935234	0.613360045340919
Merged-chr19-8803046-2	chr19	8802946	8803146	+	861.6999509999999	f1_balb.idr|f1_c57bl6.idr	exon (NM_001098237, exon 2 of 2)	exon (NM_001098237, exon 2 of 2)	516.0	NM_001098237	75291.0	Mm.23423	NM_133759	ENSMUSG00000071661	Zbtb3	4930563M09Rik	zinc finger and BTB domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-84338943-4	chr10	84338835	84339035	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	101536.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120683723-3	chr8	120683622	120683822	+	852.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15402.0	NM_001293559	12857.0	Mm.386758	NM_009941	ENSMUSG00000031818	Cox4i1	AL024441|COX|COX IV-1|COXIV|Cox4|Cox4a|IV-1	cytochrome c oxidase subunit 4I1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-100452125-2	chr9	100452025	100452225	+	604.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	34348.0	NM_001033543	213208.0	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128718522-4	chr2	128718437	128718637	+	878.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 1 of 18)	intron (NM_008587, intron 1 of 18)	19622.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	1.27393353253489	1.45048187052362	1.27232163732351	0.766556326684769	1.05651532240402	1.46290742237763	1.28317803743644	0.768153656115253	-0.196129305832389	0.887249464349067	0.998431161219273
Merged-chr13-113269997-4	chr13	113269898	113270098	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60339.0	NM_023612	71690.0	Mm.38929	NM_023612	ENSMUSG00000042379	Esm1	0610042H23Rik|AV004503|ESM-1	endothelial cell-specific molecule 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-111219850-3	chr5	111219750	111219950	+	980.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001267622, intron 6 of 22)	intron (NM_001267622, intron 6 of 22)	-110847.0	NM_001301644	56305.0	Mm.200516	NM_019640	ENSMUSG00000050017	Pitpnb	PI-TP-beta	phosphatidylinositol transfer protein, beta	protein-coding	3.43504003995535	1.73339845303702	3.64913374632063	2.98278323971161	3.26775902289479	2.96570307102529	3.91438646103666	3.35606927147938	0.458759382987862	0.499064266022154	0.937388734723802
Merged-chr3-89474086-4	chr3	89474034	89474234	+	816.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1C|Other|Other	14563.0	NM_027348	68603.0	Mm.34242	NM_026784	ENSMUSG00000027952	Pmvk	1110011E12Rik|2900002L22Rik|AV001327|PMK|PMKA|PMKASE	phosphomevalonate kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-20841618-3	chr10	20841517	20841717	+	953.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-110930.0	NM_026203	52906.0	Mm.253280	NM_026203	ENSMUSG00000019986	Ahi1	1700015F03Rik|Ahi-1|D10Bwg0629e	Abelson helper integration site 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-54073340-2	chr13	54073240	54073440	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027324, intron 1 of 10)	intron (NM_027324, intron 1 of 10)	1495.0	NM_027324	14057.0	Mm.134191	NM_027324	ENSMUSG00000021474	Sfxn1	2810002O05Rik|A930015P12Rik|f	sideroflexin 1	protein-coding	-0.834376266001032	-0.824728544043082	-0.655689071862811	-0.311461321283878	-0.833833108847386	-0.822019371387018	-0.651437980592693	-0.830331263614154	-1.98760154830032	0.481911058754152	1
Merged-chr9-110297308-4	chr9	110297240	110297440	+	876.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7852.0	NM_001081381	72341.0	Mm.374250	NM_001081381	ENSMUSG00000054836	Elp6	2610001P13Rik|2610002I17Rik|AV159994|Tmem103	elongator acetyltransferase complex subunit 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-3338792-2	chr18	3338692	3338892	+	673.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_033457, intron 1 of 1)	B1_Mur3|SINE|Alu	-1203.0	NM_001110852	12916.0	Mm.5244	NM_013498	ENSMUSG00000063889	Crem	ICER|ICERI	cAMP responsive element modulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-85326997-1	chr1	85326897	85327097	+	663.0	f1_balb.idr	Intergenic	(TC)n|Simple_repeat|Simple_repeat	-56431.0	NM_001037909	620078.0	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik	RIKEN cDNA C130026I21 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-45967715-3	chr13	45967623	45967823	+	860.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2732.0	NM_009124	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-4918698-2	chr5	4918598	4918798	+	838.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_011074, intron 12 of 14)	intron (NM_011074, intron 12 of 14)	-160482.0	NM_021457	14362.0	Mm.246003	NM_021457	ENSMUSG00000044674	Fzd1	AW227548|FZ-1|Fz1	frizzled class receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-17079757-2	chr4	17079657	17079857	+	664.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3C|LINE|L1	-773136.0	NR_135158	17389.0	Mm.187315	NM_019724	ENSMUSG00000028226	Mmp16	MT-MMP 3|MT3-MMP|Mt3mmp	matrix metallopeptidase 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-16802864-2	chr19	16802764	16802964	+	846.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21931.0	NM_173028	271564.0	Mm.211963	NM_173028	ENSMUSG00000046230	Vps13a	4930425F11|4930516E05Rik|4930543C13Rik|9930023P20|Chac|Chorein|D330038K10Rik|mKIAA0986	vacuolar protein sorting 13A	protein-coding	-2.18138529563533	-2.15523716995652	-2.1631445789866	-2.16963996020037	-2.05513010215571	-2.15352360143315	-2.16135451490766	-2.16847729006863	0.759018020146679	0.829933115115583	1
Merged-chr3-152262169-4	chr3	152262073	152262273	+	942.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199465, intron 1 of 12)	intron (NM_199465, intron 1 of 12)	3622.0	NM_001357206	68810.0	Mm.200188	NM_199465	ENSMUSG00000039103	Nexn	1110046H09Rik|AA553326|NELIN	nexilin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-37164661-2	chr10	37164561	37164761	+	772.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-25735.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-17655696-4	chr10	17655604	17655804	+	971.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-67524.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	2.99856973479813	3.30591096511759	1.26472011184931	2.07479860741178	1.17838185118535	2.52942893152611	1.79501380522767	2.84038426352792	-0.777131465549784	0.444753042361703	0.912265842646861
Merged-chr8-11479300-9	chr8	11479184	11479384	+	985.111084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011227)	promoter-TSS (NM_011227)	-785.0	NM_011227	19332.0	Mm.37632	NM_011227	ENSMUSG00000031504	Rab20	AA536966|D8Ertd350e	RAB20, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3313275-2	chr12	3313175	3313375	+	629.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F2|SINE|Alu	-3306.0	NM_016676	19325.0	Mm.378993	NM_016676	ENSMUSG00000020671	Rab10	AW107754	RAB10, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-84321784-4	chr15	84321704	84321904	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2916.0	NM_022321	64099.0	Mm.251356	NM_022321	ENSMUSG00000022439	Parvg	AI413459	parvin, gamma	protein-coding	3.49457416317614	3.34825605562611	3.49615878019699	3.54474606745678	3.46104176908924	2.11921301320379	3.4416743821743	3.69156145603557	-0.252968891927265	0.671979857908645	0.994295938730731
Merged-chr11-106162676-2	chr11	106162576	106162776	+	747.666626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_028126)	TTS (NM_028126)	-1947.0	NM_001356458	67803.0	Mm.21687	NM_172397	ENSMUSG00000040699	Limd2	0610025L06Rik|AI413966	LIM domain containing 2	protein-coding	0.72603548505047	1.39121282242646	0.583814038554241	0.920101924112136	1.29753273280057	1.40483760008277	0.58620465316636	0.576879018765275	0.370273598898142	0.815883835062996	0.998431161219273
Merged-chr19-43760664-2	chr19	43760564	43760764	+	838.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113562, intron 4 of 8)	intron (NM_001113562, intron 4 of 8)	7641.0	NM_025530	66388.0	Mm.20257	NM_025530	ENSMUSG00000025193	Cutc	2310039I18Rik|AI326282|CGI-32	cutC copper transporter	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-117121735-5	chr2	117121684	117121884	+	873.6400150000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001277256, intron 1 of 4)	CpG	713.0	NM_033524	114715.0	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-184771826-3	chr1	184771696	184771896	+	746.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39303.0	NM_008250	15284.0	Mm.1347	NM_008250	ENSMUSG00000039377	Hlx	Hlx1	H2.0-like homeobox	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-87913320-2	chr6	87913220	87913420	+	650.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173737)	promoter-TSS (NM_173737)	-656.0	NM_173737	232210.0	Mm.246241	NM_173737	ENSMUSG00000030060	Hmces	8430410A17Rik|C85376	5-hydroxymethylcytosine (hmC) binding, ES cell specific	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-130550678-2	chr1	130550578	130550778	+	657.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	78928.0	NM_009581	22789.0	Mm.4644	NM_009581	ENSMUSG00000042554	Zp3r	AV264399|SP56	zona pellucida 3 receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131964562-2	chr1	131964462	131964662	+	566.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177628, intron 1 of 4)	intron (NM_001177628, intron 1 of 4)	1647.0	NM_001177628	212980.0	Mm.200307	NM_145977	ENSMUSG00000026435	Slc45a3	2210413P12Rik|AU023994|AU043764|IPCA-6|PRST|Pcanap6	solute carrier family 45, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-97609367-3	chr3	97609271	97609471	+	726.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026539, intron 1 of 22)	intron (NM_026539, intron 1 of 22)	819.0	NM_026539	68058.0	Mm.31761	NM_026539	ENSMUSG00000028089	Chd1l	4432404A22Rik|Alc1|Snf2p	chromodomain helicase DNA binding protein 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-173981706-1	chr1	173981606	173981806	+	561.0	f0_balb.idr	intron (NM_008327, intron 1 of 6)	intron (NM_008327, intron 1 of 6)	1138.0	NM_008327	26388.0	Mm.218770	NM_008327	ENSMUSG00000026535	Ifi202b	Ifbip-1|Ifi202|Ifi202a|p202	interferon activated gene 202B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134141430-3	chr6	134141322	134141522	+	817.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 3 of 8)	intron (NM_001303102, intron 3 of 8)	105722.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	1.61207068658662	2.85626658955548	1.9374570702543	1.70138807270129	2.55454395706228	3.17857413567346	1.95345410690452	1.4972766008033	0.692490149886319	0.465572868500177	0.922736970596151
Merged-chr13-60627145-4	chr13	60627037	60627237	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	24926.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-115900266-2	chr6	115900166	115900366	+	562.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001167763, intron 15 of 28)	intron (NM_001167763, intron 15 of 28)	-31661.0	NM_145383	212541.0	Mm.2965	NM_145383	ENSMUSG00000030324	Rho	Noerg1|Opn2|Ops|RP4	rhodopsin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-116015389-2	chr6	116015289	116015489	+	822.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20384.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-86161827-2	chr15	86161727	86161927	+	705.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145475, intron 3 of 12)	intron (NM_145475, intron 3 of 12)	-23901.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-103655274-4	chr2	103655149	103655349	+	831.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178890, intron 1 of 16)	intron (NM_178890, intron 1 of 16)	88939.0	NM_178890	99382.0	Mm.35850	NM_178890	ENSMUSG00000032724	Abtb2	AW539457|BPOZ-2	ankyrin repeat and BTB (POZ) domain containing 2	protein-coding	1.11837035270779	0.983938176378101	0.962964202988153	1.87529863908751	1.29636028043045	1.77956601508367	2.23387798795414	2.07438543170613	1.8517176324014	0.129951468654623	0.564921023139857
Merged-chr10-5256904-1	chr10	5256804	5257004	+	794.0	f0_balb.idr	exon (NM_001347732, exon 64 of 146)	exon (NM_001347732, exon 64 of 146)	-62197.0	NM_001079686	64009.0	Mm.331626	NM_022027	ENSMUSG00000096054	Syne1	8B|A330049M09Rik|BE692247|C130039F11Rik|CPG2|KASH1|Myne1|mKIAA1756|myne-1	spectrin repeat containing, nuclear envelope 1	protein-coding	-1.21575676353841	-1.1882771616738	-1.1995328574972	-1.2087786211754	-1.21524488394202	-1.18583800543462	-1.19698481468061	-0.540595393272118	2.74438217975722	0.425994238664144	1
Merged-chr11-119045999-2	chr11	119045899	119046099	+	603.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-5086.0	NM_013926	30951.0	Mm.99953	NM_013926	ENSMUSG00000025578	Cbx8	Pc3	chromobox 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-80170419-2	chr11	80170318	80170518	+	832.0	f0_c57.idr|f1_c57bl6.idr	intron (NM_172133, intron 6 of 10)	intron (NM_172133, intron 6 of 10)	-13454.0	NM_028019	71956.0	Mm.22985	NM_028019	ENSMUSG00000020707	Rnf135	0610037N03Rik|2410006N06Rik	ring finger protein 135	protein-coding	1.78509960282491	2.9095365228829	2.39219544325653	2.64563084970001	2.84024037912422	2.1896028835844	1.93922562190669	2.83130373495611	0.0508451613139506	0.950881116564441	0.998431161219273
Merged-chr5-140604485-2	chr5	140604385	140604585	+	642.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2856.0	NM_008494	16848.0	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78246340-4	chr15	78246262	78246462	+	977.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008677, intron 1 of 9)	intron (NM_008677, intron 1 of 9)	1551.0	NM_008677	17972.0	Mm.2068	NM_008677	ENSMUSG00000071715	Ncf4	AI451400|p40phox	neutrophil cytosolic factor 4	protein-coding	3.34898428181739	3.05805588199722	3.94805629955571	2.98362506697048	3.97962780671386	3.77249481809439	3.31148955200773	3.30159447703702	0.357471207405405	0.522236167096093	0.947836760490745
Merged-chr13-112439658-3	chr13	112439563	112439763	+	989.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24407.0	NM_010560	16195.0	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97188100-4	chr11	97187991	97188191	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008379)	promoter-TSS (NM_008379)	-199.0	NM_008379	16211.0	Mm.251013	NM_008379	ENSMUSG00000001440	Kpnb1	AA409963|IPOB|Impnb	karyopherin (importin) beta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-73967291-4	chr12	73967165	73967365	+	807.733337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178392, intron 1 of 9)	ID_B1|SINE|B4	2735.0	NM_178392	75627.0	Mm.25937	NM_178392	ENSMUSG00000021113	Snapc1	2700033G17Rik|AU015787	small nuclear RNA activating complex, polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-182951505-3	chr1	182951405	182951605	+	979.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3283.0	NM_016928	53791.0	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding	1.8160889050421	2.35272059119588	1.00605953979205	1.69426520545898	1.9259879493378	1.03295336229883	1.0109802800413	2.03396451950759	-0.586649867392789	0.641940120296273	0.982599433509505
Merged-chr1-122358774-1	chr1	122358674	122358874	+	545.0	f1_c57bl6.idr	Intergenic	Intergenic	153629.0	NR_151524	102638832.0	Mm.112794	NR_151524	ENSMUSG00000099960	Gm28590	-	predicted gene 28590	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-121266426-1	chr10	121266326	121266526	+	657.0	f0_balb.idr	3' UTR (NM_029057, exon 12 of 12)	3' UTR (NM_029057, exon 12 of 12)	44970.0	NM_029057	74694.0	Mm.233833	NM_029057	ENSMUSG00000052302	Tbc1d30	4930505D03Rik|9530013E20Rik	TBC1 domain family, member 30	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-57430918-1	chr1	57430818	57431018	+	690.0	f0_balb.idr	Intergenic	Intergenic	-24244.0	NM_001302963	68736.0	Mm.288490	NM_001037742	ENSMUSG00000048495	Tyw5	1110034B05Rik	tRNA-yW synthesizing protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-114806180-4	chr5	114806066	114806266	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_026718)	TTS (NM_026718)	7810.0	NR_027818	66236.0	Mm.268546	NR_027817	ENSMUSG00000072694	1500011B03Rik	AI415201|AV141149|AW556386	RIKEN cDNA 1500011B03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-80224512-4	chr17	80224463	80224663	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001355458, exon 1 of 3)	5' UTR (NM_001355458, exon 1 of 3)	112.0	NM_001355458	67242.0	Mm.279985	NM_026053	ENSMUSG00000055760	Gemin6	2610019B15Rik|2810470M17Rik	gem nuclear organelle associated protein 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-50929726-2	chr5	50929626	50929826	+	638.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	624195.0	NR_027710	19017.0	Mm.259072	NM_008904	ENSMUSG00000029167	Ppargc1a	A830037N07Rik|Gm11133|PGC-1|PPARGC-1-alpha|Pgc-1alpha|Pgc1|Pgco1|Ppargc1	peroxisome proliferative activated receptor, gamma, coactivator 1 alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-88522109-2	chr9	88522009	88522209	+	808.166626	f1_balb.idr|f1_c57bl6.idr	intron (NR_040721, intron 2 of 4)	intron (NR_040721, intron 2 of 4)	788.0	NR_040721	72655.0	Mm.21798	NR_040721	ENSMUSG00000097195	Snhg5	2810026P18Rik|4933428I09Rik|mU50HG-b	small nucleolar RNA host gene 5	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-99641997-4	chr10	99641905	99642105	+	810.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_038018)	promoter-TSS (NR_038018)	-85.0	NR_038018	100417125.0	Mm.391428	NR_038018	ENSMUSG00000112503	Gm18409	-	mediator of cell motility 1 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-60285642-2	chr10	60285542	60285742	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001146124, intron 1 of 13)	intron (NM_001146124, intron 1 of 13)	1181.0	NM_001146124	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-6509049-1	chr15	6508949	6509149	+	725.5	f0_balb.idr	Intergenic	MLT1A0|LTR|ERVL-MaLR	63716.0	NM_013485	12279.0	Mm.29095	NM_013485	ENSMUSG00000022149	C9	-	complement component 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-32111782-4	chr12	32111691	32111891	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50512.0	NM_011158	19088.0	Mm.25594	NM_011158	ENSMUSG00000002997	Prkar2b	AI451071|AW061005|PKARIIbeta|Pkarb2|RII(beta)	protein kinase, cAMP dependent regulatory, type II beta	protein-coding	4.66999334111882	4.48565826559199	4.65324726795623	5.14458206562327	4.34911906486902	4.51695130017562	4.59038530200653	4.80455746935827	-0.238313009318557	0.507694107992269	0.943374049681311
Merged-chr13-67269781-3	chr13	67269656	67269856	+	926.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_155551)	promoter-TSS (NR_155551)	-688.0	NM_001001152	238690.0	Mm.306358	NM_001001152	ENSMUSG00000055480	Zfp458	BC062958|Gm33446|Rslcan-7|Znf728|mszf59-2	zinc finger protein 458	protein-coding	0.236460571848345	0.492872553259057	0.858275864754308	-0.0439244577413717	-0.0508046423337843	-0.0314363446441264	-0.0377025987693128	-0.043077039338061	-4.06699064817299	0.0601814505459317	1
Merged-chr18-58699314-1	chr18	58699214	58699414	+	1000.0	f0_balb.idr	Intergenic	Lx7|LINE|L1	39832.0	NM_025478	66307.0	Mm.182574	NM_025478	ENSMUSG00000024601	Isoc1	2610034N03Rik	isochorismatase domain containing 1	protein-coding	-1.56355737717652	-1.81244775989375	-1.82128546162293	-1.82854501295842	-1.83962066705452	-1.81053259306168	-1.81928479966835	-1.82724555674025	-1.28500227969968	0.715751224811686	1
Merged-chr17-36110962-2	chr17	36110864	36111064	+	600.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271005, intron 2 of 6)	CpG	712.0	NM_001271005	667803.0	Mm.477808	NM_001271005		H2-T-ps	C920025E04Rik|H2-T11	histocompatibility 2, T region locus, pseudogene	protein-coding	-0.626259802309346	-0.615180287021217	-0.618812324921732	-0.621613123212144	-0.625568812562247	-0.414074006488852	0.070072395352165	-0.451957485205799	3.38497484388652	0.193541914274307	1
Merged-chr6-88830284-4	chr6	88830188	88830388	+	859.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11647.0	NM_001362152	80283.0	Mm.166858	NM_030251	ENSMUSG00000030083	Abtb1	AI847549|BC003234|BPOZ|EF1ABP	ankyrin repeat and BTB (POZ) domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-54998908-2	chr11	54998808	54999008	+	787.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_013472, intron 13 of 25)	intron (NM_013472, intron 13 of 25)	34563.0	NR_138556	11749.0	Mm.265347	NM_013472	ENSMUSG00000018340	Anxa6	AW107198|Anx6|AnxVI|Cabm|Camb	annexin A6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-105764700-2	chr3	105764600	105764800	+	686.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145541, intron 1 of 7)	intron (NM_145541, intron 1 of 7)	36681.0	NM_145541	109905.0	Mm.101922	NM_145541	ENSMUSG00000068798	Rap1a	AI848598|G-22K|Krev-1|Rap1	RAS-related protein 1a	protein-coding	-1.56355737717652	-1.81244775989375	-1.82128546162293	-1.82854501295842	-1.83962066705452	-1.81053259306168	-1.81928479966835	-1.82724555674025	-1.28500227969968	0.715751224811686	1
Merged-chr15-84139842-3	chr15	84139723	84139923	+	877.194458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16648.0	NM_029427	75772.0	Mm.159565	NM_029427	ENSMUSG00000018868	Pnpla5	4833426H19Rik|GS2L	patatin-like phospholipase domain containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123171794-3	chr5	123171675	123171875	+	800.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008277)	TTS (NM_008277)	10948.0	NM_008277	15445.0	Mm.439709	NM_008277	ENSMUSG00000029445	Hpd	4HPPD|Fla|Flp|Hppd|Laf	4-hydroxyphenylpyruvic acid dioxygenase	protein-coding	2.60046181017962	2.91877001602714	1.63803922950252	2.25034623107935	2.69589520480424	1.92381593668933	1.64942033288678	2.75517973518895	-0.178741565343554	0.841666021883718	0.998431161219273
Merged-chr9-123953779-4	chr9	123953699	123953899	+	957.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2c|LINE|L2	14893.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-110850425-6	chr12	110850328	110850528	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001199785, exon 1 of 7)	exon (NM_001199785, exon 1 of 7)	149.0	NM_028365	72805.0	Mm.443524	NM_028365	ENSMUSG00000021271	Zfp839	2810455K09Rik	zinc finger protein 839	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88626728-2	chr3	88626628	88626828	+	836.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001198913, intron 1 of 21)	intron (NM_001198913, intron 1 of 21)	5334.0	NM_001198912	16800.0	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-25794590-2	chr16	25794490	25794690	+	999.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001127259, intron 3 of 13)	intron (NM_001127259, intron 3 of 13)	-7326.0	NM_001127263	22061.0	Mm.20894	NM_011641	ENSMUSG00000022510	Trp63	AI462811|Ket|P51/P63|P63|P73l|Tp63|Trp53rp1	transformation related protein 63	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122419438-1	chr8	122419338	122419538	+	946.0	f1_c57bl6.idr	Intergenic	Intergenic	-2582.0	NM_145834	234836.0	Mm.222808	NM_145834	ENSMUSG00000046108	Il17c	IL-17C	interleukin 17C	protein-coding	-1.07361930669767	-1.02544251975411	-1.2004287837262	-1.20901812710502	-1.06996311248803	-1.02317653597796	-1.19806164397903	-1.20748063874688	0.0405495723978098	0.988820212144827	1
Merged-chr5-101924574-2	chr5	101924474	101924674	+	660.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 18 of 66)	intron (NM_172882, intron 18 of 66)	145347.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-36167833-4	chr17	36167713	36167913	+	985.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081032, intron 2 of 7)	CpG-6350	724.0	NM_001081032	667977.0	Mm.441651	NM_001081032	ENSMUSG00000073402	Gm8909	EG667977|H2-Tw5l|H2-gs17	predicted gene 8909	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-70889232-4	chr2	70889106	70889306	+	962.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1K|LTR|ERVL-MaLR	-63726.0	NM_172664	228012.0	Mm.136511	NM_172664	ENSMUSG00000041997	Tlk1	4930545J15Rik	tousled-like kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-35984945-2	chr2	35984845	35985045	+	957.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	-5321.0	NM_029774	74410.0	Mm.21591	NM_028921	ENSMUSG00000026885	Ttll11	4932702F08Rik|4933424A20Rik|AU043211|D2Ertd624e	tubulin tyrosine ligase-like family, member 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141387562-3	chr4	141387475	141387675	+	771.266663	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024412, intron 16 of 19)	B3|SINE|B2	10524.0	NM_001146307	12733.0	Mm.167900	NM_024412	ENSMUSG00000033770	Clcnka	C75963|CLC-K1|Clcnk1	chloride channel, voltage-sensitive Ka	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-24763118-2	chr13	24763018	24763218	+	696.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1181.0	NM_020567	57441.0	Mm.12239	NM_020567	ENSMUSG00000006715	Gmnn	AW546347|Gem	geminin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97280523-5	chr11	97280437	97280637	+	986.93335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008942)	promoter-TSS (NM_008942)	39.0	NM_008942	19155.0	Mm.29824	NM_008942	ENSMUSG00000001441	Npepps	AAP-S|MP100|Psa|R74825|goku	aminopeptidase puromycin sensitive	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-10899459-1	chr8	10899359	10899559	+	574.0	f0_balb.idr	promoter-TSS (NR_102285)	promoter-TSS (NR_102285)	-463.0	NR_102285	71624.0	Mm.139075	NR_102285	ENSMUSG00000109089	4833411C07Rik	-	RIKEN cDNA 4833411C07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-106063266-4	chr8	106063169	106063369	+	819.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010901, intron 1 of 9)	B4A|SINE|B4	3666.0	NM_010901	18021.0	Mm.383185	NM_010901	ENSMUSG00000031902	Nfatc3	C80703|D8Ertd281e|NFAT4|NFATx	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-105053346-4	chr9	105053250	105053450	+	977.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053159)	promoter-TSS (NM_053159)	82.0	NM_053159	94062.0	Mm.29746	NM_053159	ENSMUSG00000032563	Mrpl3	2010320L16Rik|5930422H18Rik|AA407889	mitochondrial ribosomal protein L3	protein-coding	3.74073102904063	3.8977125550347	3.60547530915708	3.31768855480923	4.26057571294535	4.43441073989068	4.24725604393263	3.75649714173266	0.757431356544872	0.0993004536651954	0.490156408286484
Merged-chr15-82380269-3	chr15	82380189	82380389	+	918.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163472)	promoter-TSS (NM_001163472)	-29.0	NM_001163472	56448.0	Mm.474216	NM_019823	ENSMUSG00000061740	Cyp2d22	2D22	cytochrome P450, family 2, subfamily d, polypeptide 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-104095892-4	chr2	104095827	104096027	+	930.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001111060, exon 1 of 5)	5' UTR (NM_001111060, exon 1 of 5)	126.0	NM_001111060	12509.0	Mm.247265	NM_007652	ENSMUSG00000032679	Cd59a	AA987121|Cd59|protectin	CD59a antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-103307130-2	chr9	103307030	103307230	+	550.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_176979, intron 2 of 27)	PB1D10|SINE|Alu	1803.0	NM_176979	235559.0	Mm.259893	NM_176979	ENSMUSG00000032555	Topbp1	1110031N14Rik|2810429C13Rik|AI256758|D430026L04Rik|mKIAA0259	topoisomerase (DNA) II binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-77965177-2	chr10	77965077	77965277	+	992.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_138301, intron 4 of 33)	intron (NM_138301, intron 4 of 33)	4695.0	NM_138301	28240.0	Mm.276762	NM_138301	ENSMUSG00000009292	Trpm2	9830168K16Rik|C79133|LTRPC2|TRPC7|Trp7|Trrp7	transient receptor potential cation channel, subfamily M, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-119359571-1	chr12	119359471	119359671	+	825.0	f0_balb.idr	Intergenic	Intergenic	-83839.0	NM_001163136	238455.0	Mm.31376	NM_001163136	ENSMUSG00000041886	Macc1	4732474O15Rik|Gm267	metastasis associated in colon cancer 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-76618041-2	chr12	76617941	76618141	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013675, intron 15 of 35)	intron (NM_013675, intron 15 of 35)	-70116.0	NR_046044	100504549.0	Mm.440349	NR_046044	ENSMUSG00000112388	AI463170	-	expressed sequence AI463170	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-95637813-5	chr9	95637684	95637884	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_029620, exon 1 of 9)	5' UTR (NM_029620, exon 1 of 9)	156.0	NM_029620	76477.0	Mm.46016	NM_029620	ENSMUSG00000015354	Pcolce2	2400001O18Rik|Pcpe2	procollagen C-endopeptidase enhancer 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-147009995-4	chr2	147009876	147010076	+	709.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3023.0	NM_001356403	24128.0	Mm.3065	NM_011917	ENSMUSG00000027433	Xrn2	-	5'-3' exoribonuclease 2	protein-coding	1.85043122654871	1.71382184989834	1.65970067171943	1.85067438549792	1.77224941704464	1.72580512198214	1.80281971343397	1.11702935170714	-0.436575787453921	0.685921872753636	0.996533206832645
Merged-chr3-30519683-2	chr3	30519583	30519783	+	653.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-10008.0	NM_021442	14013.0	Mm.56965	NM_007963	ENSMUSG00000027684	Mecom	D630039M04Rik|Evi-1|Evi1|Jbo|Mds|Mds1|Mds1-Evi1|Prdm3|Znfpr1b1	MDS1 and EVI1 complex locus	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-4237666-1	chr11	4237566	4237766	+	902.3333130000001	f0_balb.idr	intron (NM_001013365, intron 1 of 2)	intron (NM_001013365, intron 1 of 2)	881.0	NM_001013365	18413.0	Mm.131422	NM_001013365	ENSMUSG00000058755	Osm	OncoM	oncostatin M	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-118479728-4	chr2	118479606	118479806	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009273)	promoter-TSS (NM_009273)	-10.0	NM_009273	20813.0	Mm.363404	NM_009273	ENSMUSG00000009549	Srp14	14kDa|AW536328	signal recognition particle 14	protein-coding	6.13366853538223	5.01580724349889	6.53434234350332	5.37783810084317	5.67424526942339	6.57655220624838	5.86189003151217	5.96605601531312	0.177026574150598	0.58297557676549	0.966599221005409
Merged-chr8-117501543-2	chr8	117501443	117501643	+	579.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_172285, intron 1 of 32)	intron (NM_172285, intron 1 of 32)	3268.0	NM_172285	234779.0	Mm.192699	NM_172285	ENSMUSG00000034330	Plcg2	PLC-gamma-2|PLCgamma2|Plcg-2	phospholipase C, gamma 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-60748773-2	chr10	60748673	60748873	+	941.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023596, intron 2 of 5)	intron (NM_023596, intron 2 of 5)	4009.0	NM_023596	71279.0	Mm.284462	NM_023596	ENSMUSG00000020100	Slc29a3	4933435C21Rik|AW987637|Ent3	solute carrier family 29 (nucleoside transporters), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-73557905-3	chr7	73557817	73558017	+	993.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_037569, intron 1 of 4)	CpG	478.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-65019493-4	chr13	65019392	65019592	+	984.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13566.0	NM_001083890	238683.0	Mm.295543	NM_001083890	ENSMUSG00000074849	Spata31d1c	4932441B19Rik|Fam75d1c	spermatogenesis associated 31 subfamily D, member 1C	protein-coding	3.31761155805475	3.63110536000526	2.72919723865247	3.72943123997765	3.13026334857605	2.69520768405367	3.11036716351564	3.2020567885109	-0.589722221714352	0.327786171833691	0.830350093278487
Merged-chr10-63386591-4	chr10	63386495	63386695	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013888)	promoter-TSS (NM_013888)	32.0	NM_013888	30045.0	Mm.32550	NM_013888	ENSMUSG00000036764	Dnajc12	Jdp1|mJDP1	DnaJ heat shock protein family (Hsp40) member C12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-129786594-2	chr5	129786513	129786713	+	584.916626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009838)	promoter-TSS (NM_009838)	640.0	NM_133900	100678.0	Mm.271784	NM_133900	ENSMUSG00000029446	Psph	AI480570|PSP|PSPase	phosphoserine phosphatase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-48590125-3	chr14	48590030	48590230	+	900.6333619999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	72604.0	NM_001360226	18424.0	Mm.134516	NM_144841	ENSMUSG00000021848	Otx2	E130306E05Rik	orthodenticle homeobox 2	protein-coding	0.66953698750527	0.722964541634779	0.706002502308631	0.692570123503483	1.97777041952778	1.51237181287918	1.30746845271687	1.80682274933118	5.15303393252084	0.000645295211038013	0.0137599264372644
Merged-chr8-125669052-2	chr8	125668952	125669152	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028908)	promoter-TSS (NM_028908)	-766.0	NM_028908	74393.0	Mm.41709	NM_028908	ENSMUSG00000050930	Map10	4933403G14Rik|AI835009|mKIAA1383	microtubule-associated protein 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-115764241-6	chr6	115764134	115764334	+	975.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1768.0	NM_001168256	94346.0	Mm.29739	NM_144805	ENSMUSG00000059900	Tmem40	9030407H20Rik|AV091463|W64236	transmembrane protein 40	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-79820733-3	chr1	79820614	79820814	+	616.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009255, intron 2 of 8)	intron (NM_009255, intron 2 of 8)	37951.0	NM_009255	20720.0	Mm.3093	NM_009255	ENSMUSG00000026249	Serpine2	B230326M24Rik|PAI-1|PI-7|PI7|PN-1|Spi4	serine (or cysteine) peptidase inhibitor, clade E, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-76255252-4	chr12	76255157	76255357	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138745)	promoter-TSS (NM_138745)	25.0	NM_138745	108156.0	Mm.29584	NM_138745	ENSMUSG00000021048	Mthfd1	Dcs|E430024A07Rik|Mthfd	methylenetetrahydrofolate dehydrogenase (NADP+ dependent), methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-64819271-3	chr16	64819184	64819384	+	656.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347245, intron 2 of 8)	MTC|LTR|ERVL-MaLR	32439.0	NM_001347245	72020.0	Mm.25960	NM_028059	ENSMUSG00000047141	Zfp654	1600021C16Rik|1810008K20Rik|433036|Gm5488|Znf654	zinc finger protein 654	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-117881335-2	chr5	117881235	117881435	+	681.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008712, intron 2 of 27)	intron (NM_008712, intron 2 of 27)	14496.0	NM_008712	18125.0	Mm.44249	NM_008712	ENSMUSG00000029361	Nos1	2310005C01Rik|N-NOS|NC-NOS|NO|NOS|NOS-I|Nos-1|bNOS|nNOS	nitric oxide synthase 1, neuronal	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70693818-4	chr8	70693719	70693919	+	931.591675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3920.0	NM_010592	16478.0	Mm.419851	NM_010592	ENSMUSG00000071076	Jund	Jund1	jun D proto-oncogene	protein-coding	0.00660087131883541	0.525710572568283	0.0185131879332211	0.0140413934599787	0.672260270635887	0.535393151818827	0.0197902178860299	0.0148231376705757	1.32219653601298	0.554445749179968	1
Merged-chr16-92419204-4	chr16	92419098	92419298	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081549, intron 1 of 3)	intron (NM_001081549, intron 1 of 3)	-19120.0	NM_019466	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-54828038-4	chr1	54827962	54828162	+	989.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081433, intron 2 of 27)	intron (NM_001081433, intron 2 of 27)	98325.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-25060324-2	chr16	25060224	25060424	+	677.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_040374, intron 1 of 2)	intron (NR_040374, intron 1 of 2)	685.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-72837452-4	chr17	72837363	72837563	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357370)	promoter-TSS (NM_001357370)	-73.0	NM_001357369	383295.0	Mm.277533	NM_027166	ENSMUSG00000039770	Ypel5	2310076K21Rik|CGI-127	yippee like 5	protein-coding	2.90134125129533	2.7842226101201	3.87210005439294	3.15669952964475	3.17806018123624	3.78192076614021	1.65480606781925	3.61605083612512	0.0335692471621954	0.962550514200136	0.998431161219273
Merged-chr5-24729859-2	chr5	24729759	24729959	+	808.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081441, intron 1 of 5)	intron (NM_001081441, intron 1 of 5)	821.0	NM_001081441	269633.0	Mm.392539	NM_026621	ENSMUSG00000055235	Wdr86	2810046M22Rik|BC059069	WD repeat domain 86	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-79706797-2	chr10	79706697	79706897	+	749.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077184, intron 1 of 6)	intron (NM_001077184, intron 1 of 6)	2439.0	NM_009768	12215.0	Mm.726	NM_009768	ENSMUSG00000023175	Bsg	AI115436|AI325119|CD147|EMMPRIN|HT-7	basigin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98939247-2	chr11	98939147	98939347	+	716.125	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177303)	promoter-TSS (NM_001177303)	-464.0	NM_001177303	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-43114131-3	chr5	43114031	43114231	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-119332.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-32162943-4	chr18	32162842	32163042	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011946)	promoter-TSS (NM_011946)	-147.0	NM_011946	26405.0	Mm.211762	NM_011946	ENSMUSG00000024383	Map3k2	9630061B06Rik|AI585793|Mekk2|Mekk2b	mitogen-activated protein kinase kinase kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-62701211-4	chr1	62701119	62701319	+	992.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2098.0	NM_001077406	18187.0	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-43679740-4	chr19	43679637	43679837	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4559.0	NR_045645	100502982.0	Mm.313570	NR_045645		BC037704	-	cDNA sequence BC037704	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-54443808-4	chr1	54443708	54443908	+	866.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4782.0	NM_001033194	98488.0	Mm.25856	NM_001033194	ENSMUSG00000041303	Gtf3c3	TF3C-gamma|TFIIIC102	general transcription factor IIIC, polypeptide 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127296263-4	chr7	127296169	127296369	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008400)	promoter-TSS (NM_008400)	9.0	NM_001253874	16408.0	Mm.1618	NM_008400	ENSMUSG00000030830	Itgal	(p180)|Cd11a|LFA-1|LFA-1A|Ly-15|Ly-21	integrin alpha L	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-54117239-7	chr6	54117140	54117340	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163640, intron 1 of 12)	intron (NM_001163640, intron 1 of 12)	77308.0	NM_001163640	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	-1.05877568042897	-1.03501312238488	-1.04817210678232	-1.05426068996071	-1.05810152525527	-1.03216151557194	-0.188696606725984	-1.05378786495764	3.16074139804981	0.330468818528456	1
Merged-chr8-115398205-4	chr8	115398108	115398308	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	308686.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-20297542-4	chr8	20297444	20297644	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_030708)	promoter-TSS (NR_030708)	-112.0	NR_030708	547150.0	Mm.359054	NR_030708	ENSMUSG00000071796	6820431F20Rik	-	cadherin 11 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-12005343-2	chr4	12005243	12005443	+	838.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38769.0	NR_040577	100503636.0	Mm.209078	NR_040577		1700123M08Rik	1600025K15Rik	RIKEN cDNA 1700123M08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120947924-2	chr11	120947824	120948024	+	998.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030696)	promoter-TSS (NM_030696)	-560.0	NM_030696	80879.0	Mm.28632	NM_030696	ENSMUSG00000025161	Slc16a3	Mct3|Mct4	solute carrier family 16 (monocarboxylic acid transporters), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19317500-2	chr7	19317400	19317600	+	983.875	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7455.0	NM_001347586	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52075588-2	chr13	52075488	52075688	+	695.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21153.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-104992873-4	chr3	104992764	104992964	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31155.0	NM_009520	22414.0	Mm.10740	NM_009520	ENSMUSG00000027840	Wnt2b	Wnt13	wingless-type MMTV integration site family, member 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-75086255-4	chr8	75086138	75086338	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7380.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-42779795-4	chr19	42779738	42779938	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001346703, exon 1 of 20)	5' UTR (NM_001346703, exon 1 of 20)	140.0	NM_001346703	192236.0	Mm.218381	NM_019424	ENSMUSG00000025188	Hps1	6030422N11Rik|BB405864|Gm21361|Hps|ep	HPS1, biogenesis of lysosomal organelles complex 3 subunit 1	protein-coding	5.57580564252307	5.81697137397572	6.22406912233986	5.68947462431509	5.9624385878162	6.04902769714385	6.09626140981146	5.75917223892313	0.139928429908783	0.569121831606614	0.962718661854691
Merged-chr3-94814826-3	chr3	94814741	94814941	+	701.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22726.0	NM_001165948	229584.0	Mm.274787	NM_172683	ENSMUSG00000038902	Pogz	9530006B08Rik	pogo transposable element with ZNF domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-60582287-3	chr3	60582188	60582388	+	790.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310514, intron 2 of 8)	intron (NM_001310514, intron 2 of 8)	81109.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-35449875-4	chr2	35449766	35449966	+	852.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010283, intron 1 of 8)	intron (NM_010283, intron 1 of 8)	11583.0	NM_001308299	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150860716-4	chr4	150860620	150860820	+	969.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133753, intron 1 of 3)	intron (NM_133753, intron 1 of 3)	5650.0	NM_133753	74155.0	Mm.318841	NM_133753	ENSMUSG00000028967	Errfi1	1300002F13Rik|AI788755|Mig-6|Mig6|RALT	ERBB receptor feedback inhibitor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-144965162-1	chr4	144965062	144965262	+	550.0	f1_c57bl6.idr	Intergenic	Intergenic	72025.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-27574238-2	chr7	27574122	27574322	+	677.166626	f0_balb.idr|f1_balb.idr	intron (NM_175107, intron 7 of 9)	intron (NM_175107, intron 7 of 9)	13746.0	NM_001122767	66367.0	Mm.29831	NM_175107	ENSMUSG00000049643	2310022A10Rik	-	RIKEN cDNA 2310022A10 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-51102090-1	chr9	51101990	51102190	+	598.0	f0_balb.idr	promoter-TSS (NM_177702)	promoter-TSS (NM_177702)	-12.0	NM_177702	235345.0	Mm.72828	NM_177702	ENSMUSG00000032057	4833427G06Rik	-	RIKEN cDNA 4833427G06 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129336476-1	chr4	129336376	129336576	+	596.0	f1_c57bl6.idr	intron (NM_025970, intron 1 of 6)	intron (NM_025970, intron 1 of 6)	450.0	NM_025970	67106.0	Mm.36575	NM_025970	ENSMUSG00000057572	Zbtb8os	2010001H09Rik|2310028N13Rik|AI851226|Arch|Archm	zinc finger and BTB domain containing 8 opposite strand	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-33820398-6	chr5	33820251	33820451	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-22761.0	NM_175231	107823.0	Mm.19892	NM_175231	ENSMUSG00000057406	Nsd2	5830445G22Rik|9430010A17Rik|AW555663|C130020C13Rik|D030027O06Rik|D930023B08Rik|MMSET|Whsc1|Whsc1l|mKIAA1090	nuclear receptor binding SET domain protein 2	protein-coding	4.51033249293332	3.28737804193445	3.58320262665674	4.3834765589774	4.20948871348023	2.23004571526243	4.06065414146265	4.52712616909224	-0.0683357989754525	0.906215999450786	0.998431161219273
Merged-chr5-117121177-2	chr5	117121077	117121277	+	833.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199685, intron 1 of 20)	intron (NM_001199685, intron 1 of 20)	1048.0	NM_001199685	330177.0	Mm.24343	NM_183306	ENSMUSG00000061288	Taok3	2900006A08Rik|A130052D22|A430105I05Rik	TAO kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59883694-2	chr15	59883594	59883794	+	697.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	-88735.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-111301350-2	chr8	111301250	111301450	+	692.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-1128.0	NM_146218	234736.0	Mm.334816	NM_146218	ENSMUSG00000033596	Rfwd3	BC027246	ring finger and WD repeat domain 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-92192039-4	chr2	92191942	92192142	+	947.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_035480)	promoter-TSS (NR_035480)	65.0	NR_035480	100316756.0		NR_035480	ENSMUSG00000088639	Mir1955	mir-1955|mmu-mir-1955	microRNA 1955	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-8767707-4	chr3	8767635	8767835	+	855.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-100697.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-24428576-3	chr8	24428479	24428679	+	851.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10367.0	NM_026931	69068.0	Mm.25775	NM_026931	ENSMUSG00000056313	Tcim	1110065B09Rik|1810011O10Rik|AW121743|AW321058	transcriptional and immune response regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36684318-4	chr1	36684214	36684414	+	995.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1131.0	NM_201365	381337.0	Mm.17413	NM_027957	ENSMUSG00000046337	Fam178b	1700024G10Rik|Gm990	family with sequence similarity 178, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127011168-3	chr7	127011056	127011256	+	707.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080638, intron 1 of 14)	intron (NM_080638, intron 1 of 14)	3438.0	NM_080638	78388.0	Mm.228797	NM_080638	ENSMUSG00000030681	Mvp	2310009M24Rik|LRP|VAULT1	major vault protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4197753-2	chr19	4197653	4197853	+	545.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_011237, exon 6 of 11)	exon (NM_011237, exon 6 of 11)	3850.0	NM_011237	19367.0	Mm.277629	NM_011237	ENSMUSG00000024824	Rad9a	Rad9	RAD9 checkpoint clamp component A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-14072735-3	chr8	14072610	14072810	+	609.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034862, intron 2 of 5)	intron (NM_001034862, intron 2 of 5)	17617.0	NM_001034862	234086.0	Mm.268896	NM_001034862	ENSMUSG00000051978	Erich1	-	glutamate rich 1	protein-coding	0.670337097551558	1.10846961932704	0.436915224205449	0.82998147402929	1.0974497477505	0.444256035760812	0.438231191713654	0.433129156438923	-0.802182361850235	0.661538035893179	1
Merged-chr11-97629804-4	chr11	97629694	97629894	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175332)	promoter-TSS (NM_175332)	-78.0	NM_175332	103551.0	Mm.24506	NM_175332	ENSMUSG00000043439	Epop	AA409164|AI413509|AW539173|E13|E130012A19Rik|esPRC2p48	elongin BC and polycomb repressive complex 2 associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-85261247-2	chr11	85261147	85261347	+	655.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26081.0	NR_028329	654810.0	Mm.209580	NR_028329	ENSMUSG00000085628	Appbp2os	D630032N06Rik	amyloid beta precursor protein (cytoplasmic tail) binding protein 2, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-73693661-3	chr18	73693550	73693750	+	762.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008540, intron 1 of 11)	intron (NM_008540, intron 1 of 11)	10091.0	NM_008540	17128.0	Mm.100399	NM_008540	ENSMUSG00000024515	Smad4	AW743858|D18Wsu70e|DPC4|Madh4	SMAD family member 4	protein-coding	1.05595188332769	0.650437492122859	0.638225079173963	0.628661925482564	0.938262433663806	1.3623347658257	1.17538039582483	1.70989701246579	2.81274596979424	0.0712204198285361	0.402181956590576
Merged-chr5-146805547-2	chr5	146805447	146805647	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10591.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-37633168-4	chr13	37633049	37633249	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-192889.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59566934-2	chr15	59566834	59567034	+	775.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026746, intron 4 of 6)	intron (NM_026746, intron 4 of 6)	-81720.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-109119811-4	chr4	109119708	109119908	+	942.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355190, intron 2 of 21)	MTD|LTR|ERVL-MaLR	-1772.0	NM_001134791	100273.0	Mm.366315	NM_133885	ENSMUSG00000028559	Osbpl9	2600011I06Rik|AU015843|Orp-9	oxysterol binding protein-like 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135956538-5	chr5	135956416	135956616	+	890.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17960.0	NM_001160366	109267.0	Mm.332750	NM_001160366	ENSMUSG00000029699	Ssc4d	C330016E03Rik|S4D-SRCRB|SRCRB-S4D|Srcrb4d	scavenger receptor cysteine rich family, 4 domains	protein-coding	2.1474236357445	1.36516817806251	1.82569687856488	1.63599380745239	1.5657166347071	2.53146744284835	1.09504419495148	1.64443785279264	0.147945780893128	0.893344010267317	0.998431161219273
Merged-chr9-25539523-4	chr9	25539444	25539644	+	984.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 2 of 7)	intron (NM_026189, intron 2 of 7)	57947.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-84491721-2	chr3	84491621	84491821	+	559.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-11282.0	NM_001033301	229474.0	Mm.331107	NM_001033301	ENSMUSG00000041842	Fhdc1	6330505N24Rik|Gm126	FH2 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36730954-2	chr18	36730854	36731054	+	561.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13B|LTR|ERVK	-4116.0	NM_028036	71983.0	Mm.135188	NM_028036	ENSMUSG00000006850	Tmco6	2410015B03Rik	transmembrane and coiled-coil domains 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-139743767-3	chr4	139743675	139743875	+	918.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011039, intron 8 of 8)	intron (NM_011039, intron 8 of 8)	89193.0	NM_011039	18509.0	Mm.218760	NM_011039	ENSMUSG00000028736	Pax7	Pax-7	paired box 7	protein-coding	2.84798871030873	2.51369576020498	1.50329305333968	3.4413778178991	0.862281761922715	0.992931109880361	1.26611498963134	0.9175311567479	-5.34802154239622	4.37673002821937e-05	0.00156596441983825
Merged-chr1-74193605-2	chr1	74193505	74193705	+	768.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178241, intron 1 of 1)	intron (NM_178241, intron 1 of 1)	1026.0	NM_178241	227288.0	Mm.337035	NM_178241	ENSMUSG00000048480	Cxcr1	Il8ra	chemokine (C-X-C motif) receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-45390025-4	chr16	45389934	45390134	+	958.5125119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358443, intron 4 of 4)	intron (NM_001358443, intron 4 of 4)	19019.0	NM_001358443	17470.0	Mm.245851	NM_010818	ENSMUSG00000022661	Cd200	Mox2|OX2	CD200 antigen	protein-coding	3.14987518106425	3.35834403551465	2.94435681173108	4.07825955323656	2.92915816641703	3.28775409854963	2.19511524625584	2.98162566490761	-0.927552451303074	0.150220470810463	0.602305959756336
Merged-chr1-93824809-2	chr1	93824709	93824909	+	966.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178882)	promoter-TSS (NM_178882)	-431.0	NM_178882	98314.0	Mm.383401	NM_178882	ENSMUSG00000073609	D2hgdh	AA408776|AA408778|AI325464	D-2-hydroxyglutarate dehydrogenase	protein-coding	-1.84371485578039	-1.81332821174849	-1.82251738371298	-1.83006564316449	-1.84158176955426	-1.81133687985023	-1.5312619047181	-1.82871450833159	1.60090129203521	0.64914985597185	1
Merged-chr5-122816549-2	chr5	122816449	122816649	+	560.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001042491, intron 4 of 16)	B1_Mm|SINE|Alu	4793.0	NM_021505	59008.0	Mm.332667	NM_021505	ENSMUSG00000029472	Anapc5	2510006G12Rik|AA408751|AA536819|AA986414|APC5|Anpc5	anaphase-promoting complex subunit 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153143548-2	chr2	153143448	153143648	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001172117, intron 10 of 12)	L2c|LINE|L2	-17753.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-68863949-4	chr11	68863839	68864039	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10808.0	NM_023668	83431.0	Mm.31979	NM_023668	ENSMUSG00000018736	Ndel1	2600006O07Rik|MITAP1|NUDEL|mNudel	nudE neurodevelopment protein 1 like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36130039-3	chr1	36129898	36130098	+	796.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	14315.0	NR_105862	102465540.0		NR_105862	ENSMUSG00000098752	Mir6897	Gm27652|mmu-mir-6897	microRNA 6897	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-115149147-2	chr7	115149069	115149269	+	945.625	f0_c57.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	197895.0	NR_040319	101786.0	Mm.395157	NR_040317	ENSMUSG00000108379	A730082K24Rik	AU044236	RIKEN cDNA A730082K24 gene	ncRNA	4.38925134705966	2.76340888208124	3.10274802897286	3.58070259579402	2.1666591127017	1.49382711482786	2.54171399119391	1.91578139403344	-2.73208513679368	0.000387614526546784	0.0090596086159253
Merged-chr8-119790623-2	chr8	119790523	119790723	+	821.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12207.0	NM_028883	74347.0	Mm.358759	NM_028883	ENSMUSG00000034105	Tldc1	4632415K11Rik|Kiaa1609	TBC/LysM associated domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-55430160-4	chr12	55430075	55430275	+	949.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	31350.0	NM_011968	26443.0	Mm.30210	NM_011968	ENSMUSG00000021024	Psma6	IOTA	proteasome (prosome, macropain) subunit, alpha type 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-73354431-4	chr8	73354350	73354550	+	989.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010687)	promoter-TSS (NM_010687)	-910.0	NM_010687	16795.0	Mm.324371	NM_010687	ENSMUSG00000004383	Large1	BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd	LARGE xylosyl- and glucuronyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-73184064-4	chr15	73183969	73184169	+	996.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153178, intron 1 of 18)	intron (NM_153178, intron 1 of 18)	878.0	NM_153178	239528.0	Mm.23095	NM_153178	ENSMUSG00000036698	Ago2	1110029L17Rik|2310051F07Rik|AI225898|AL022874|AW546247|Eif2c2|Gerp95|Gm10365|mKIAA4215	argonaute RISC catalytic subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-87045643-4	chr11	87045541	87045741	+	886.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025638, intron 5 of 9)	intron (NM_025638, intron 5 of 9)	28496.0	NM_025638	66569.0	Mm.281887	NM_025638	ENSMUSG00000061666	Gdpd1	2610020H15Rik	glycerophosphodiester phosphodiesterase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-126712699-3	chr2	126712590	126712790	+	854.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019729, intron 1 of 18)	intron (NM_019729, intron 1 of 18)	5362.0	NM_019729	84092.0	Mm.272629	NM_019729	ENSMUSG00000027363	Usp8	AI574262|AW557536|Ubpy|mKIAA0055	ubiquitin specific peptidase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-59550379-4	chr4	59550268	59550468	+	829.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1004.0	NM_144904	230257.0	Mm.331640	NM_144904	ENSMUSG00000028382	Ptbp3	5830471K22Rik|AA407443|AI462022|AW107884|C86549|Rod1	polypyrimidine tract binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-59407957-4	chr4	59407861	59408061	+	997.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163288, intron 5 of 16)	L1MA5|LINE|L1	30672.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-152805547-2	chr2	152805447	152805647	+	682.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009743, intron 2 of 2)	URR1A|DNA|hAT-Charlie	22942.0	NR_149254	12048.0	Mm.238213	NM_009743	ENSMUSG00000007659	Bcl2l1	Bcl(X)L|Bcl-XL|Bcl2l|BclX|bcl-x|bcl2-L-1	BCL2-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-32292183-4	chr12	32292066	32292266	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-83517.0	NM_001146200	30955.0	Mm.101369	NM_020272	ENSMUSG00000020573	Pik3cg	5830428L06Rik|PI3Kgamma|p110gamma	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-30975385-4	chr16	30975267	30975467	+	876.716675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198626, intron 3 of 3)	intron (NM_198626, intron 3 of 3)	106065.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	2.12477243345108	1.23908890752252	1.96461618610355	2.49666573077755	1.94297841084569	1.24498738732606	1.98018186250371	2.50991727570439	-0.0908771764760556	0.931921468071339	0.998431161219273
Merged-chr9-113837202-1	chr9	113837102	113837302	+	577.0	f0_balb.idr	intron (NM_001286600, intron 3 of 34)	intron (NM_001286600, intron 3 of 34)	24616.0	NM_001286602	76499.0	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-111119975-3	chr5	111119859	111120059	+	603.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001267622, intron 5 of 22)	intron (NM_001267622, intron 5 of 22)	115815.0	NR_030482	735278.0		NR_030482	ENSMUSG00000076163	Mir701	Mirn701|mir-701|mmu-mir-701	microRNA 701	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-114459369-2	chr13	114459269	114459469	+	848.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001301373)	promoter-TSS (NM_001301373)	-418.0	NM_008046	14313.0	Mm.4913	NM_008046	ENSMUSG00000021765	Fst	AL033346|FS	follistatin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-15198227-2	chr3	15198127	15198327	+	751.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	134075.0	NM_001076679	751864.0	Mm.431296	NM_001076679	ENSMUSG00000078783	Gm9733	-	predicted gene 9733	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67247344-3	chr10	67247259	67247459	+	849.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207221, intron 22 of 25)	B3|SINE|B2	37922.0	NM_001036293	641340.0	Mm.136223	NM_001036293	ENSMUSG00000075000	Nrbf2	NRBF-2	nuclear receptor binding factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80387236-4	chr7	80387129	80387329	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010194, exon 2 of 19)	exon (NM_010194, exon 2 of 19)	717.0	NM_010194	14159.0	Mm.48757	NM_010194	ENSMUSG00000053158	Fes	AI586313|BB137047|FPS|c-fes	feline sarcoma oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-49204547-3	chr11	49204433	49204633	+	947.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024846, intron 1 of 4)	intron (NM_001024846, intron 1 of 4)	1033.0	NM_009562	22720.0	Mm.16650	NM_009562	ENSMUSG00000046311	Zfp62	-	zinc finger protein 62	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140612926-2	chr5	140612826	140613026	+	819.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008494, intron 5 of 7)	intron (NM_008494, intron 5 of 7)	5585.0	NM_008494	16848.0	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-79355758-2	chr15	79355658	79355858	+	707.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001304832, intron 1 of 2)	ID_B1|SINE|B4	7356.0	NM_001304832	17133.0	Mm.86646	NM_010755	ENSMUSG00000042622	Maff	-	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein F (avian)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-119761944-4	chr3	119761866	119762066	+	828.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310711, intron 2 of 13)	URR1A|DNA|hAT-Charlie	21422.0	NM_001310711	56195.0	Mm.29966	NM_019550	ENSMUSG00000028134	Ptbp2	Ptb2|brPTB|nPTB	polypyrimidine tract binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-93518453-2	chr15	93518353	93518553	+	820.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033217, intron 1 of 7)	intron (NM_001033217, intron 1 of 7)	77438.0	NM_001033217	106042.0	Mm.150314	NM_001033217	ENSMUSG00000036158	Prickle1	1110058P22Rik|AW215793|Prickle|b2b019Clo|mpk1	prickle planar cell polarity protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-32798969-4	chr16	32798885	32799085	+	932.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1550.0	NM_001145874	224116.0	Mm.153301	NM_146071	ENSMUSG00000035638	Muc20	BC026367	mucin 20	protein-coding	2.32282235992038	3.34855031102463	3.23676014719314	2.85028192030727	2.34376138620632	3.8243549529425	3.34811480336483	3.46886968265766	0.588542541573187	0.374470353470313	0.86721387654551
Merged-chr11-11897804-2	chr11	11897704	11897904	+	697.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001190448, intron 1 of 14)	intron (NM_001190448, intron 1 of 14)	340.0	NM_001190448	13195.0	Mm.12906	NM_016672	ENSMUSG00000020182	Ddc	Aadc	dopa decarboxylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-87972731-2	chr3	87972631	87972831	+	553.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016701, intron 1 of 3)	intron (NM_016701, intron 1 of 3)	1638.0	NM_016701	18008.0	Mm.331129	NM_016701	ENSMUSG00000004891	Nes	AA166324|C78523|ESTM46|Ifaprc2|Marc2|RC2	nestin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-120910979-4	chr14	120910876	120911076	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023579)	promoter-TSS (NM_023579)	-218.0	NM_023579	70572.0	Mm.221452	NM_023579	ENSMUSG00000030662	Ipo5	1110011C18Rik|5730478E03Rik|AA409333|C76941|IMB3|Kpnb3|Ranbp5|imp5	importin 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24724450-4	chr17	24724333	24724533	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026684)	promoter-TSS (NM_026684)	-45.0	NM_026684	68342.0	Mm.1129	NM_026684	ENSMUSG00000040048	Ndufb10	0610011B04Rik|22kDa|PDSW	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 10	protein-coding	5.25777791956899	5.10714651749189	5.14473358015217	5.30647747435242	5.97403582133818	5.66249597672546	5.8992738731877	5.27028949351388	0.594671224980006	0.0333056074066118	0.255717157208529
Merged-chr5-72169931-2	chr5	72169831	72170031	+	756.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1742.0	NM_001356614	27784.0	Mm.44223	NM_178599	ENSMUSG00000029213	Commd8	C77770|D5Buc26e	COMM domain containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-10926470-1	chr4	10926370	10926570	+	558.0	f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	51972.0	NM_026005	67157.0	Mm.440552	NM_026005	ENSMUSG00000059482	2610301B20Rik	AI428449	RIKEN cDNA 2610301B20 gene	protein-coding	1.52402986668086	1.96599805587751	2.09949678368591	1.28364267575642	1.53572613095741	1.98112956492451	1.65771491229639	1.28853691567572	-0.387087466135842	0.719335179006124	0.998431161219273
Merged-chr16-74413096-1	chr16	74412996	74413196	+	565.0	f1_balb.idr	intron (NM_001358493, intron 1 of 28)	intron (NM_001358493, intron 1 of 28)	-1271.0	NM_175549	268902.0	Mm.171736	NM_175549	ENSMUSG00000052516	Robo2	2600013A04Rik|9430089E08Rik|BB097918|D230004I22Rik|mKIAA1568	roundabout guidance receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-34519827-4	chr19	34519718	34519918	+	951.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111100, intron 3 of 9)	intron (NM_001111100, intron 3 of 9)	7656.0	NM_001111100	16889.0	Mm.157545	NM_021460	ENSMUSG00000024781	Lipa	AA960673|Lal|Lip-1|Lip1	lysosomal acid lipase A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44400839-2	chr9	44400739	44400939	+	567.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_106053)	TTS (NR_106053)	416.0	NR_106053	102465658.0		NR_106053	ENSMUSG00000099309	Mir7085	Gm27423|mmu-mir-7085	microRNA 7085	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-18834406-2	chr5	18834306	18834506	+	626.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	392149.0	NR_102341	70832.0	Mm.398993	NR_102341	ENSMUSG00000097626	4921504A21Rik	-	RIKEN cDNA 4921504A21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-77627648-2	chr15	77627548	77627748	+	635.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15638.0	NM_001143686	328563.0	Mm.17957	NM_001143686	ENSMUSG00000091694	Apol11b	A330102K04Rik	apolipoprotein L 11b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106330644-2	chr11	106330544	106330744	+	688.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133199, intron 13 of 23)	B1_Mur4|SINE|Alu	-16082.0	NM_001313939	15985.0	Mm.2987	NM_008339	ENSMUSG00000040592	Cd79b	B29|Ig-beta|Igb|Igbeta	CD79B antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-66796938-4	chr4	66796854	66797054	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30597.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	5.80334540649807	5.70480511019201	5.82255540449992	6.16835503580281	5.84184360870949	5.97592028788173	5.57812917988411	6.07420749000594	-0.00962035271415623	0.968537057863908	0.998431161219273
Merged-chr11-119480958-2	chr11	119480858	119481058	+	911.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153849, intron 2 of 3)	intron (NR_153849, intron 2 of 3)	10277.0	NR_153849	78439.0	Mm.440446	NR_153849	ENSMUSG00000109408	A930037H05Rik	Gm44935	RIKEN cDNA A930037H05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128673228-1	chr10	128673128	128673328	+	588.0	f0_balb.idr	intron (NM_173733, intron 1 of 3)	intron (NM_173733, intron 1 of 3)	690.0	NM_173733	211389.0	Mm.23352	NM_173733	ENSMUSG00000049858	Suox	SO	sulfite oxidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-31700054-2	chr5	31699954	31700154	+	791.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_181280, intron 1 of 12)	intron (NM_181280, intron 1 of 12)	2004.0	NM_144541	107976.0	Mm.482126	NM_144541	ENSMUSG00000052139	Babam2	6030405P19Rik|AI429776|B830038C02Rik|Bre	BRISC and BRCA1 A complex member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-112283320-2	chr5	112283220	112283420	+	801.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001326590, intron 1 of 5)	B4A|SINE|B4	6629.0	NM_009419	22022.0	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-42939667-3	chr17	42939567	42939767	+	917.25	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63243.0	NM_009847	12488.0	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107645197-2	chr9	107645097	107645297	+	990.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9855.0	NM_008138	14678.0	Mm.196464	NM_008138	ENSMUSG00000032562	Gnai2	C76432|Galphai2|Gia|Gnai-2	guanine nucleotide binding protein (G protein), alpha inhibiting 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32090585-2	chr2	32090485	32090685	+	559.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4943.0	NM_145521	227721.0	Mm.257236	NM_145521	ENSMUSG00000051373	Plpp7	D830019K17Rik|NET39|Ppapdc3	phospholipid phosphatase 7 (inactive)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5316735-4	chr17	5316627	5316827	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 11 of 19)	intron (NM_001085355, intron 11 of 19)	102040.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-114080600-2	chr7	114080500	114080700	+	932.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025846, intron 1 of 5)	intron (NM_025846, intron 1 of 5)	37181.0	NM_025846	66922.0	Mm.276572	NM_025846	ENSMUSG00000055723	Rras2	2610016H24Rik|C86394|TC21	related RAS viral (r-ras) oncogene 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-8874179-4	chr10	8874081	8874281	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 1 of 19)	intron (NM_175155, intron 1 of 19)	11889.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	-2.18308165884198	-2.15547475440471	-2.16382331017202	-2.1706810624505	-2.18114370519566	-2.15366558754311	-2.03057248461154	-2.16945352807143	0.759018020146679	0.829933115115583	1
Merged-chr11-117089669-2	chr11	117089569	117089769	+	805.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12321.0	NR_105853	102465258.0		NR_105853	ENSMUSG00000104740	Mir6516	mmu-mir-6516	microRNA 6516	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91459291-3	chr2	91459190	91459390	+	570.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172668, intron 1 of 37)	intron (NM_172668, intron 1 of 37)	1759.0	NM_001145857	228357.0	Mm.275149	NM_172668	ENSMUSG00000027253	Lrp4	6430526J12Rik|D230026E03|Megf7|mdig	low density lipoprotein receptor-related protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-17740701-1	chr12	17740601	17740801	+	663.0	f1_balb.idr	intron (NM_016677, intron 1 of 3)	intron (NM_016677, intron 1 of 3)	49892.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	2.59159745489892	2.75299142712089	1.21162766877785	2.81465217005337	2.0424400844553	1.25816155512943	1.22023638842463	3.02836875237235	-0.710451103887618	0.518806749967422	0.947641799425091
Merged-chr8-22873388-3	chr8	22873307	22873507	+	718.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081149, intron 3 of 17)	intron (NM_001081149, intron 3 of 17)	13868.0	NM_001081149	244349.0	Mm.182776	NM_001081149	ENSMUSG00000031540	Kat6a	1500036M03|9930021N24Rik|MOZ|Myst3|Zfp220	K(lysine) acetyltransferase 6A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97277431-1	chr6	97277331	97277531	+	589.5	f1_c57bl6.idr	Intergenic	Intergenic	-24651.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	0.132491738576052	1.10398055641566	0.1515571228136	0.144464419551322	0.464015786873587	1.11895110290038	0.153568982571275	0.145709779048481	0.345388391526878	0.865214020358946	1
Merged-chr10-117711538-2	chr10	117711438	117711638	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001288586)	promoter-TSS (NM_001288586)	-780.0	NM_001288586	17246.0	Mm.22670	NM_010786	ENSMUSG00000020184	Mdm2	1700007J15Rik|AA415488|Mdm-2	transformed mouse 3T3 cell double minute 2	protein-coding	0.106560506356517	0.123241916751123	0.668483487995838	0.11354756995964	0.370808569586809	0.473889127531064	0.118972159073828	0.636726315191844	0.936528135070148	0.647087864124528	1
Merged-chr13-42067747-2	chr13	42067647	42067847	+	540.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007772, intron 2 of 8)	intron (NM_007772, intron 2 of 8)	15726.0	NM_007772	110521.0	Mm.4808	NM_007772	ENSMUSG00000021366	Hivep1	Cryabp1	human immunodeficiency virus type I enhancer binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-125361213-4	chr5	125361113	125361313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-20119.0	NM_001205083	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94121341-2	chr10	94121241	94121441	+	709.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_053072, intron 9 of 20)	intron (NM_053072, intron 9 of 20)	-26590.0	NM_011629	22025.0	Mm.107483	NM_011629	ENSMUSG00000005897	Nr2c1	4831444H07Rik|80.3|Eenr|TR2|Tr2-11	nuclear receptor subfamily 2, group C, member 1	protein-coding	0.864281770604063	0.0710056398732413	0.0647489217643675	0.502836731929142	0.0530362720132936	0.591614546702272	0.066130854964256	0.0607528326943713	-1.39966088664553	0.522686721913046	1
Merged-chr16-55519834-4	chr16	55519733	55519933	+	888.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25102.0	NR_039578	100628589.0		NR_039578	ENSMUSG00000093292	Mir5118	mmu-mir-5118|mu-mir-5118	microRNA 5118	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-86429500-2	chr1	86429400	86429600	+	569.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	3171.0	NM_027966	71863.0	Mm.179627	NM_027966	ENSMUSG00000036574	Tex44	1700019O17Rik	testis expressed 44	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-79580104-2	chr12	79580004	79580204	+	612.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	282753.0	NM_001252562	19363.0	Mm.341756	NM_009014	ENSMUSG00000059060	Rad51b	AI553500|R51H2|Rad51l1|mREC2	RAD51 paralog B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-70828721-2	chr17	70828621	70828821	+	802.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18056.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-30575363-2	chr17	30575263	30575463	+	993.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_172618, intron 1 of 11)	intron (NM_172618, intron 1 of 11)	924.0	NM_172618	224671.0	Mm.41220	NM_027060	ENSMUSG00000062202	Btbd9	1700023F20Rik|4930402L05|AI464421	BTB (POZ) domain containing 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-16470055-4	chr5	16469954	16470154	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-83441.0	NM_001289460	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-55019553-4	chr12	55019470	55019670	+	989.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33234.0	NM_013815	217578.0	Mm.479583	NM_013815	ENSMUSG00000035021	Baz1a	Acf1|B930060C03|BC065123|Gtl5|Wcrf180|cbp146	bromodomain adjacent to zinc finger domain 1A	protein-coding	5.03091926491134	3.98743425168401	4.25534368257431	4.39890678062801	4.43382989401185	4.09411705337012	4.10080444129475	3.68292064613431	-0.498498207795861	0.251263213644777	0.749541530907518
Merged-chr4-152296135-2	chr4	152296035	152296235	+	736.583313	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C2|LTR|ERVK	-1079.0	NR_037908	57295.0	Mm.277464	NM_133788	ENSMUSG00000039662	Icmt	1700008E11Rik|C80758|Gm13095|HSTE14|PPMT|STE14|pcCMT	isoprenylcysteine carboxyl methyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-105586903-4	chr5	105586808	105587008	+	959.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133897, intron 3 of 3)	intron (NM_133897, intron 3 of 3)	67437.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4894389-4	chr16	4894283	4894483	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357062, intron 1 of 17)	intron (NM_001357062, intron 1 of 17)	8283.0	NM_001357061	17237.0	Mm.291326	NM_029657	ENSMUSG00000022517	Mgrn1	2610042J20Rik|mKIAA0544|md|nc	mahogunin, ring finger 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-59238797-4	chr4	59238664	59238864	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21287.0	NR_105031	101055769.0	Mm.421401	NR_105031		Gm12596	-	predicted gene 12596	ncRNA	3.7690399229943	2.9577252664674	3.11296873905787	4.16386057489409	4.04304395096305	4.33684018111362	3.629580001443	2.91307130977036	0.32907485411063	0.56302556217666	0.960362415684079
Merged-chr17-57334077-2	chr17	57333977	57334177	+	635.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	-24609.0	NM_001355723	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-50936694-6	chr14	50936550	50936750	+	922.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C2-int|LTR|ERVL-MaLR	-5801.0	NM_001310507	219024.0	Mm.239117	NM_001033271	ENSMUSG00000035953	Tmem55b	BC039161|Pip4p1	transmembrane protein 55b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-78901664-4	chr12	78901549	78901749	+	963.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013738, intron 1 of 8)	intron (NM_013738, intron 1 of 8)	5289.0	NM_013738	27260.0	Mm.103380	NM_013738	ENSMUSG00000021118	Plek2	-	pleckstrin 2	protein-coding	2.87259415586526	2.76984051080573	2.31282078415015	2.24956283081345	3.18935953661828	2.24693910494751	2.46701136804777	2.26080653615646	0.0747099356876102	0.923365184455224	0.998431161219273
Merged-chr5-122647045-2	chr5	122646945	122647145	+	984.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038845, intron 1 of 12)	intron (NM_001038845, intron 1 of 12)	3134.0	NM_001038887	18439.0	Mm.42026	NM_011027	ENSMUSG00000029468	P2rx7	AI467586|P2X(7)|P2X7R	purinergic receptor P2X, ligand-gated ion channel, 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-129590955-3	chr3	129590850	129591050	+	573.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130450, intron 2 of 4)	intron (NM_130450, intron 2 of 4)	-58562.0	NR_153368	102639747.0	Mm.393257	NR_153368		Gm35986	-	predicted gene, 35986	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44800144-3	chr9	44800038	44800238	+	873.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357383)	promoter-TSS (NM_001357383)	-891.0	NM_001357383	71687.0	Mm.41409	NM_027865	ENSMUSG00000002032	Tmem25	0610039J01Rik|AI429491	transmembrane protein 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-17284987-2	chr16	17284887	17285087	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001983, intron 45 of 54)	intron (NM_001001983, intron 45 of 54)	8687.0	NM_177473	224019.0	Mm.246388	NM_177473	ENSMUSG00000055692	Tmem191c	4933405M22Rik|D16Bwg1494e|MNCb-4137	transmembrane protein 191C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-60932944-4	chr11	60932816	60933016	+	736.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008928, intron 1 of 11)	intron (NM_008928, intron 1 of 11)	859.0	NM_008928	26397.0	Mm.18494	NM_008928	ENSMUSG00000018932	Map2k3	AW212142|MEK3|MKK3|Prkmk3|mMKK3b	mitogen-activated protein kinase kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-60802286-4	chr11	60802182	60802382	+	788.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009171, intron 3 of 11)	PB1D10|SINE|Alu	8983.0	NM_009171	20425.0	Mm.364956	NM_009171	ENSMUSG00000020534	Shmt1	AI324848|AI385541|C81125|Shmt|mshmt|mshmt1|mshmt2	serine hydroxymethyltransferase 1 (soluble)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-10093633-4	chr17	10093535	10093735	+	941.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	225726.0	NM_021881	19317.0	Mm.130694	NM_021881	ENSMUSG00000062078	Qk	1110003F05Rik|1500005P18|QkI|l(17)-1Wis|l17Wis1	quaking	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-5955152-2	chr11	5955052	5955252	+	891.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019661)	promoter-TSS (NM_019661)	-606.0	NM_019661	56418.0	Mm.294821	NM_019661	ENSMUSG00000002741	Ykt6	0610042I15Rik|1810013M05Rik|AW105923	YKT6 v-SNARE homolog (S. cerevisiae)	protein-coding	-1.50534433797901	-1.47394179928343	-1.48343818617935	-1.49123880112259	-1.3545218820919	-1.47188389262796	-1.48128841234098	-1.19099945612094	1.93927122156264	0.576980285976584	1
Merged-chr5-34368687-2	chr5	34368587	34368787	+	593.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1246.0	NM_001243123	231128.0	Mm.286885	NM_001030306	ENSMUSG00000037210	Fam193a	-	family with sequence similarity 193, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-75908386-2	chr15	75908286	75908486	+	626.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029663, intron 1 of 9)	intron (NM_029663, intron 1 of 9)	958.0	NM_001285433	66656.0	Mm.258927	NM_023240	ENSMUSG00000055762	Eef1d	EF-1-delta	eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-110523219-1	chr13	110523119	110523319	+	612.0	f0_balb.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	128175.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	-0.0658573052030796	0.158626862855348	0.748583988993167	0.607331863539886	-0.0646920033492621	-0.0459680173051505	-0.0520310636344326	-0.057227262750024	-4.03953903356183	0.0661267429959209	1
Merged-chr14-19777051-4	chr14	19776931	19777131	+	959.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008695, intron 4 of 20)	intron (NM_008695, intron 4 of 20)	25774.0	NM_008695	18074.0	Mm.20348	NM_008695	ENSMUSG00000021806	Nid2	AW547149|Ly111|NID-2|entactin-2|nidogen-2	nidogen 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-108876203-4	chr6	108876100	108876300	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47559.0	NM_138677	192193.0	Mm.21596	NM_138677	ENSMUSG00000030104	Edem1	A130059K23Rik|EDEM|mKIAA0212	ER degradation enhancer, mannosidase alpha-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-17565458-4	chr10	17565355	17565555	+	848.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-157773.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-106560275-4	chr3	106560171	106560371	+	999.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025582, intron 3 of 6)	B1F|SINE|Alu	-12469.0	NM_133869	99712.0	Mm.429443	NM_133869	ENSMUSG00000040774	Cept1	9930118K05Rik|mCEPT1	choline/ethanolaminephosphotransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-140261358-4	chr1	140261265	140261465	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081027, intron 1 of 27)	intron (NM_001081027, intron 1 of 27)	15108.0	NM_001081027	240776.0	Mm.483845	NM_001081027	ENSMUSG00000052726	Kcnt2	E330038N15Rik|Slick	potassium channel, subfamily T, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-13525873-4	chr9	13525778	13525978	+	932.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-94111.0	NM_001013813	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	4.04555737530746	3.11148509890383	3.68323540277659	4.77431250707227	4.95571905955526	3.93534937728001	4.73527874798812	4.93091998706969	0.835561141845619	0.074301109898375	0.411994919146904
Merged-chr1-166430091-4	chr1	166429998	166430198	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20270.0	NM_175170	71592.0	Mm.192094	NM_175170	ENSMUSG00000040596	Pogk	9130401E23Rik|BASS2|mKIAA1513	pogo transposable element with KRAB domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141742107-1	chr4	141742007	141742207	+	755.0	f0_balb.idr	Intergenic	Intergenic	-4568.0	NM_001081408	75986.0	Mm.30032	NM_001081408	ENSMUSG00000040706	Agmat	5033405N08Rik	agmatine ureohydrolase (agmatinase)	protein-coding	2.47508139883146	1.0851214743068	1.05335952595462	1.83252404275421	1.23077431279824	1.38412857654688	2.57161551403106	2.88821945041983	1.05062040567306	0.366848699090186	0.861862339647405
Merged-chr12-112760515-8	chr12	112760425	112760625	+	996.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178911)	promoter-TSS (NM_178911)	-130.0	NM_178911	104759.0	Mm.203915	NM_178911	ENSMUSG00000052160	Pld4	AI132321|thss	phospholipase D family, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-34535636-2	chr5	34535536	34535736	+	974.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011893, intron 1 of 12)	B1_Mus1|SINE|Alu	-7729.0	NM_001145858	24055.0	Mm.5012	NM_011893	ENSMUSG00000054520	Sh3bp2	3BP2	SH3-domain binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-26122772-4	chr2	26122695	26122895	+	723.50415	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026495)	promoter-TSS (NM_026495)	16.0	NM_026495	67991.0	Mm.131074	NM_026495	ENSMUSG00000026932	Nacc2	0610020I02Rik|AI448087|Btbd14a|C030048H19Rik	nucleus accumbens associated 2, BEN and BTB (POZ) domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-25188476-6	chr17	25188370	25188570	+	967.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001197024)	promoter-TSS (NM_001197024)	70.0	NM_001197024	74154.0	Mm.267353	NM_028789	ENSMUSG00000015127	Unkl	1300004G08Rik	unkempt family like zinc finger	protein-coding	4.02606972359272	3.9922053912477	3.86285680292577	3.95383875035967	4.05711001844275	4.02033697125446	3.89204702788349	3.9731610697702	0.0377260331620377	0.930758092988483	0.998431161219273
Merged-chr15-78591035-2	chr15	78590935	78591135	+	674.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-6012.0	NM_028195	72318.0	Mm.32911	NM_028195	ENSMUSG00000018008	Cyth4	2510004M07Rik|5830469K17Rik|AI467541|Pscd4|mFLJ00017	cytohesin 4	protein-coding	-0.87414515275804	-0.862001859132591	-0.868115548918381	-0.33908102440107	-0.873586625915592	-0.859285003257129	-0.535202596515792	-0.869989336289722	-0.800779889061357	0.795503455834171	1
Merged-chr2-128804355-3	chr2	128804271	128804471	+	849.2000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13932.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132019144-4	chr4	132019050	132019250	+	824.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183428, intron 1 of 20)	intron (NM_183428, intron 1 of 20)	29928.0	NM_001128606	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-115828972-2	chr4	115828888	115829088	+	860.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175308, intron 1 of 3)	intron (NM_175308, intron 1 of 3)	896.0	NM_175308	100465.0	Mm.35571	NM_175308	ENSMUSG00000028709	Mob3c	AW822253|D130076I06Rik|Mobkl2c	MOB kinase activator 3C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-82995571-2	chr3	82995458	82995658	+	916.5	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-12166.0	NM_133862	99571.0	Mm.16422	NM_133862	ENSMUSG00000033860	Fgg	3010002H13Rik|AI256424	fibrinogen gamma chain	protein-coding	1.8161846172471	2.38645256351931	2.44491259093808	2.08756483680826	3.25428370076188	2.54944392945339	2.70190100575571	3.11640935661836	1.5487060901727	0.0424427465049512	0.295078108528703
Merged-chr6-17674434-1	chr6	17674334	17674534	+	549.0	f1_balb.idr	Intergenic	Lx9|LINE|L1	-19560.0	NM_001289626	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-75096544-4	chr8	75096403	75096603	+	699.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010442, intron 2 of 4)	PB1D10|SINE|Alu	2885.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122142530-5	chr5	122142469	122142669	+	884.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4507.0	NM_183307	330188.0	Mm.386907	NM_183307	ENSMUSG00000043036	Ccdc63	4921511C16Rik	coiled-coil domain containing 63	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-22806120-2	chr2	22806020	22806220	+	587.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019456, intron 1 of 13)	intron (NM_019456, intron 1 of 13)	31793.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-39507623-4	chr6	39507511	39507711	+	919.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172477, intron 3 of 18)	intron (NM_172477, intron 3 of 18)	50223.0	NM_172477	209773.0	Mm.440021	NM_172477	ENSMUSG00000038456	Dennd2a	B930096L08Rik|C130031G22|mKIAA1277	DENN/MADD domain containing 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3622036-2	chr4	3621936	3622136	+	552.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34470.0	NR_040643	70143.0	Mm.417835	NR_040643	ENSMUSG00000085394	2210414B05Rik	-	RIKEN cDNA 2210414B05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-61272447-2	chr10	61272347	61272547	+	605.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081127, intron 1 of 21)	intron (NM_001081127, intron 1 of 21)	991.0	NM_001081127	237360.0	Mm.333252	NM_001081127	ENSMUSG00000059901	Adamts14	Adamts-14|TS14	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126422462-4	chr8	126422376	126422576	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_174987)	promoter-TSS (NM_174987)	-25.0	NM_174987	67892.0	Mm.31946	NM_174987	ENSMUSG00000051671	Coa6	1810063B05Rik|AI447995	cytochrome c oxidase assembly factor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-64615640-4	chr17	64615547	64615747	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008549, intron 1 of 21)	intron (NM_008549, intron 1 of 21)	13998.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-5241483-1	chr15	5241383	5241583	+	611.0	f0_c57.idr	intron (NM_001136079, intron 2 of 2)	intron (NM_001136079, intron 2 of 2)	2704.0	NM_001136079	19219.0	Mm.18509	NM_008965	ENSMUSG00000039942	Ptger4	EP4|Ptgerep4	prostaglandin E receptor 4 (subtype EP4)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-117199535-6	chr4	117199458	117199658	+	834.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-16934.0	NM_134471	73804.0	Mm.247651	NM_134471	ENSMUSG00000028678	Kif2c	4930402F02Rik|ESTM5|Knsl6|MCAK|X83316	kinesin family member 2C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70433385-4	chr11	70433294	70433494	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145429, intron 1 of 14)	intron (NM_145429, intron 1 of 14)	814.0	NM_001271358	216869.0	Mm.203747	NM_145429	ENSMUSG00000060216	Arrb2	AI326910|AW122872|Arr3	arrestin, beta 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-90995474-6	chr16	90995373	90995573	+	878.7777710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045515, intron 2 of 32)	intron (NM_001045515, intron 2 of 32)	15622.0	NM_001045515	104015.0	Mm.187079	NM_001045515	ENSMUSG00000022973	Synj1	A930006D20Rik|AA675315|mKIAA0910	synaptojanin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-9647892-3	chr9	9647797	9647997	+	772.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-246534.0	NR_105745	102466147.0		NR_105745	ENSMUSG00000098408	Mir6237	Gm27411|mmu-mir-6237	microRNA 6237	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-151157032-2	chr4	151156932	151157132	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081557, intron 7 of 23)	intron (NM_001081557, intron 7 of 23)	67462.0	NM_001308446	105704528.0	Mm.415128	NM_001308446	ENSMUSG00000078491	Gm13090	-	predicted gene 13090	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-117309093-1	chr3	117308993	117309193	+	893.0	f0_balb.idr	Intergenic	Intergenic	51783.0	NM_177664	229791.0	Mm.140138	NM_177664	ENSMUSG00000044667	Plppr4	A330086D10|D3Bwg0562e|Lppr4|PRG-1|mKIAA0455	phospholipid phosphatase related 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-91132194-2	chr13	91132094	91132294	+	691.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025770, intron 3 of 7)	MTB_Mm|LTR|ERVL-MaLR	91793.0	NM_025770	66795.0	Mm.235385	NM_025770	ENSMUSG00000021619	Atg10	5330424L23Rik|5430428K15Rik|AI852123|APG10|Agp10|Apg10l|Apg10p|Atg10l	autophagy related 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-17808833-2	chr4	17808733	17808933	+	550.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-44060.0	NR_135158	17389.0	Mm.187315	NM_019724	ENSMUSG00000028226	Mmp16	MT-MMP 3|MT3-MMP|Mt3mmp	matrix metallopeptidase 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-118106904-4	chr4	118106776	118106976	+	939.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285520, intron 2 of 11)	intron (NM_001285520, intron 2 of 11)	28070.0	NM_001285520	20441.0	Mm.251002	NM_009176	ENSMUSG00000028538	St3gal3	ST3GalIII|ST3N|Siat3|Siat6	ST3 beta-galactoside alpha-2,3-sialyltransferase 3	protein-coding	5.26565513326885	4.81335140053811	4.39257487518449	4.63169335915974	5.12696735370375	5.64140262160774	4.83567329921577	5.14197236692748	0.464214216564249	0.17615858437647	0.645950701512497
Merged-chr6-114641401-2	chr6	114641301	114641501	+	634.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1696.0	NM_028835	74244.0	Mm.275332	NM_028835	ENSMUSG00000030314	Atg7	1810013K23Rik|Agp7|Apg7l|Atg7l|Gm21553	autophagy related 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-123527716-2	chr4	123527616	123527816	+	680.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199137, intron 5 of 92)	intron (NM_001199137, intron 5 of 92)	-88704.0	NR_105824	102465214.0		NR_105824	ENSMUSG00000099005	Mir6398	Gm27657|mmu-mir-6398	microRNA 6398	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-11841735-1	chr18	11841635	11841835	+	577.0	f1_balb.idr	intron (NM_022021, intron 1 of 8)	intron (NM_022021, intron 1 of 8)	-1297.0	NR_035447	100316686.0		NR_035447	ENSMUSG00000084565	Mir1901	Mirn1901|mmu-mir-1901	microRNA 1901	ncRNA	1.26710144381894	0.915849401549346	2.02278828688319	1.13109503887879	1.27990504635106	2.12677884148385	3.07522994181325	0.865264247536387	1.78312179991471	0.140130371178507	0.584431299471601
Merged-chr8-115707950-4	chr8	115707866	115708066	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1072.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-25038199-2	chr16	25038099	25038299	+	804.083313	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13B2|LTR|ERVK	-21440.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-5420221-6	chr5	5420084	5420284	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-39933.0	NM_011074	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-152475840-2	chr3	152475740	152475940	+	964.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081277, intron 12 of 13)	intron (NM_001081277, intron 12 of 13)	79156.0	NM_001287139	108946.0	Mm.379292	NM_198416	ENSMUSG00000039068	Zzz3	3110065C23Rik|6430567E01Rik|AA408566|AI481057|AW556059|R75514	zinc finger, ZZ domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-15711179-2	chr9	15711079	15711279	+	847.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_172289, intron 1 of 10)	intron (NM_172289, intron 1 of 10)	1441.0	NM_172289	234967.0	Mm.138815	NM_172289	ENSMUSG00000043885	Slc36a4	6330573I15Rik|PAT4	solute carrier family 36 (proton/amino acid symporter), member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-4237632-2	chr12	4237532	4237732	+	763.916626	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001204912, exon 2 of 2)	3' UTR (NM_001204912, exon 2 of 2)	3605.0	NM_001204912	69709.0	Mm.250552	NM_001204912	ENSMUSG00000096199	Ptrhd1	2410017P09Rik	peptidyl-tRNA hydrolase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-94355084-2	chr11	94354984	94355184	+	770.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_029600, exon 26 of 31)	exon (NM_029600, exon 26 of 31)	27083.0	NM_146024	71452.0	Mm.141054	NM_027799	ENSMUSG00000020864	Ankrd40	1110011C06Rik|5530600A18Rik|Gcap15	ankyrin repeat domain 40	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-65606883-2	chr17	65606783	65606983	+	737.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355402, intron 1 of 6)	intron (NM_001355402, intron 1 of 6)	6672.0	NM_001355402	30960.0	Mm.266767	NM_013933	ENSMUSG00000024091	Vapa	33kDa|VAP33	vesicle-associated membrane protein, associated protein A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44380570-2	chr9	44380470	44380670	+	855.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_021395, exon 2 of 26)	exon (NM_021395, exon 2 of 26)	1080.0	NM_021395	12282.0	Mm.116721	NM_021395	ENSMUSG00000032115	Hyou1	AI415631|CBP-140|Cab140|Grp170|Orp150	hypoxia up-regulated 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-45094016-3	chr13	45093892	45094092	+	744.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-91896.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	2.96781455113654	1.87199760920524	3.55145794129439	3.25342115454414	0.900973995964911	1.05237092218696	1.00684997748583	0.965359112233257	-6.31953627048652	5.07793718905574e-07	3.69990427495693e-05
Merged-chr15-94545018-4	chr15	94544930	94545130	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029926, intron 1 of 11)	RLTR42-int|LTR|ERVK	1370.0	NM_029926	266632.0	Mm.422858	NM_029926	ENSMUSG00000059883	Irak4	8430405M07Rik|9330209D03Rik|IRAK-4|NY-REN-64	interleukin-1 receptor-associated kinase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-125558091-2	chr7	125558002	125558202	+	636.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001008700, intron 1 of 10)	intron (NM_001008700, intron 1 of 10)	5820.0	NM_001008700	16190.0	Mm.233802	NM_010557	ENSMUSG00000030748	Il4ra	CD124|Il4r	interleukin 4 receptor, alpha	protein-coding	-0.294719313777552	-0.285621296236716	-0.288640577399241	0.0693474731608071	0.110937678467121	0.0234021894739991	-0.28797788495195	-0.290543489728771	0.993305132143796	0.693370263473867	1
Merged-chr2-69585406-2	chr2	69585306	69585506	+	641.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081088, intron 1 of 78)	CpG	661.0	NM_001081088	14725.0	Mm.23847	NM_001081088	ENSMUSG00000027070	Lrp2	AI315343|AW536255|D230004K18Rik|Gp330|Megalin|b2b1625.2Clo	low density lipoprotein receptor-related protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-55237153-4	chr1	55237070	55237270	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175439)	promoter-TSS (NM_175439)	-7.0	NM_175439	212679.0	Mm.19223	NM_175439	ENSMUSG00000046994	Mars2	C730026E21Rik|MetRS	methionine-tRNA synthetase 2 (mitochondrial)	protein-coding	5.03149290278294	5.78163527166513	5.33855384450796	4.93174954954287	5.55995397941369	5.29185953643159	4.9339308842844	6.20896977132377	0.323073038642745	0.335948701636619	0.836478802345633
Merged-chr11-67564862-1	chr11	67564762	67564962	+	663.0	f0_c57.idr	intron (NM_008088, intron 1 of 13)	MLT1D|LTR|ERVL-MaLR	-21638.0	NM_001109657	14457.0	Mm.40338	NM_008088	ENSMUSG00000033066	Gas7	AW124766|B230343A10Rik|Gas7-cb	growth arrest specific 7	protein-coding	-0.430229623969659	-0.415672083816518	0.474896875176252	-0.424098320777578	-0.429315410460752	-0.2026988616185	-0.22465226058279	-0.423455041286575	-1.75099072951689	0.485713930752788	1
Merged-chr17-84082942-2	chr17	84082842	84083042	+	999.166626	f1_balb.idr|f1_c57bl6.idr	intron (NR_045458, intron 2 of 5)	intron (NR_045458, intron 2 of 5)	4282.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-76459440-2	chr11	76459342	76459542	+	884.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346670, intron 8 of 21)	intron (NM_001346670, intron 8 of 21)	9023.0	NM_001291186	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	1.98120313532018	2.07421092418445	0.963951861386917	1.48779960817593	1.12097623313726	0.986880573880207	1.80545625346762	1.62764202900244	-0.856598790200395	0.491328334641863	0.934520824196745
Merged-chr6-129401226-2	chr6	129401126	129401326	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019985, intron 2 of 5)	intron (NM_019985, intron 2 of 5)	3929.0	NM_001204239	56760.0	Mm.30700	NM_019985	ENSMUSG00000030159	Clec1b	1810061I13Rik|Clec-2|Clec2	C-type lectin domain family 1, member b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16117418-2	chr7	16117318	16117518	+	973.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_025898, exon 11 of 11)	3' UTR (NM_025898, exon 11 of 11)	-2458.0	NM_133727	70394.0	Mm.41101	NM_133727	ENSMUSG00000006021	Kptn	2310042D10Rik|2E4|C030013F01Rik	kaptin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-77049674-3	chr13	77049589	77049789	+	787.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134071, intron 17 of 20)	intron (NM_134071, intron 17 of 20)	85779.0	NM_134071	105377.0	Mm.209730	NM_134071	ENSMUSG00000021597	Slf1	2700017A04Rik|AW545819|Ankrd32|Brctd1|Brctx|C730024G01Rik	SMC5-SMC6 complex localization factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-8640312-2	chr12	8640212	8640412	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus1|LINE|L1	-33822.0	NM_001160221	80913.0	Mm.341243	NM_030723	ENSMUSG00000020594	Pum2	5730503J23Rik|Pumm2	pumilio RNA-binding family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95638631-2	chr3	95638531	95638731	+	620.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	13651.0	NM_001026212	56205.0	Mm.241365	NM_019561	ENSMUSG00000038619	Ensa	1700020C18Rik|2610007F17Rik|AI451924	endosulfine alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80889779-1	chr7	80889679	80889879	+	709.0	f1_c57bl6.idr	TTS (NR_027976)	TTS (NR_027976)	11490.0	NR_152101	71968.0	Mm.274226	NM_028026	ENSMUSG00000025722	Wdr73	1200011I23Rik|2410008B13Rik|AI848574|C85352	WD repeat domain 73	protein-coding	-0.245876010916974	0.336158248081853	-0.232444907889573	-0.23745764523726	-0.244615858450776	-0.224569104868717	-0.231019705007907	0.830609589120081	1.33879523729837	0.586242406327946	1
Merged-chr14-70069045-2	chr14	70068945	70069145	+	699.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8400.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-28805877-2	chr3	28805777	28805977	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_154889, intron 1 of 3)	intron (NR_154889, intron 1 of 3)	369.0	NM_026517	68028.0	Mm.21724	NM_026517	ENSMUSG00000039221	Rpl22l1	3110001N18Rik|AU041196	ribosomal protein L22 like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118229001-3	chr11	118228908	118229108	+	765.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	PB1D10|SINE|Alu	-16266.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-132576367-4	chr7	132576270	132576470	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016978)	promoter-TSS (NM_016978)	28.0	NM_016978	18242.0	Mm.13694	NM_016978	ENSMUSG00000030934	Oat	AI194874|rhg	ornithine aminotransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-87623430-2	chr1	87623330	87623530	+	785.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110192, intron 1 of 26)	intron (NM_001110192, intron 1 of 26)	3118.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-102608272-4	chr4	102608160	102608360	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001177980)	TTS (NM_001177980)	18417.0	NM_001177981	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-93342857-4	chr1	93342770	93342970	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023200)	promoter-TSS (NM_023200)	-82.0	NM_080850	269224.0	Mm.379454	NM_080850	ENSMUSG00000026274	Pask	mKIAA0135	PAS domain containing serine/threonine kinase	protein-coding	6.45017398929167	6.16422449946161	6.71078385181316	5.99818444183937	6.62112724149238	6.43587847713164	5.80294197225195	6.68185710810809	0.0766486030604487	0.752487375362082	0.998431161219273
Merged-chr5-112972481-4	chr5	112972383	112972583	+	994.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285806, intron 3 of 20)	intron (NM_001285806, intron 3 of 20)	43055.0	NM_001285806	320129.0	Mm.285619	NM_177078	ENSMUSG00000042249	Grk3	4833444A01Rik|AI851927|AW551196|Adrbk-2|Adrbk2|Bark-2	G protein-coupled receptor kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-119574571-4	chr8	119574487	119574687	+	914.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026648)	promoter-TSS (NM_026648)	613.0	NM_175185	72552.0	Mm.36756	NM_175185	ENSMUSG00000034189	Hsdl1	2700067E09Rik	hydroxysteroid dehydrogenase like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125162141-4	chr6	125162055	125162255	+	910.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001302779)	TTS (NM_001302779)	3618.0	NM_008084	14433.0	Mm.304088	NM_008084	ENSMUSG00000057666	Gapdh	Gapd	glyceraldehyde-3-phosphate dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-87923837-4	chr6	87923740	87923940	+	927.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173737, intron 4 of 6)	intron (NM_173737, intron 4 of 6)	9864.0	NM_173737	232210.0	Mm.246241	NM_173737	ENSMUSG00000030060	Hmces	8430410A17Rik|C85376	5-hydroxymethylcytosine (hmC) binding, ES cell specific	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5050411-3	chr19	5050386	5050586	+	828.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145495)	promoter-TSS (NM_145495)	-322.0	NM_145495	225870.0	Mm.271922	NM_145495	ENSMUSG00000024883	Rin1	-	Ras and Rab interactor 1	protein-coding	1.07658577437194	0.609343835231305	0.59255362580485	1.94193304180894	0.941049131104635	0.613058620290473	0.596301750330105	1.95494025753059	-0.0621492358927393	0.96872640975153	0.998431161219273
Merged-chr6-54737872-3	chr6	54737779	54737979	+	738.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56255.0	NM_001289740	68235.0	Mm.233860	NM_026629	ENSMUSG00000038065	Mturn	2410066E13Rik|AI448550|B230212L03Rik	maturin, neural progenitor differentiation regulator homolog (Xenopus)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180313778-2	chr1	180313678	180313878	+	568.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16A1|LTR|ERVL	-16698.0	NM_001081175	320404.0	Mm.132535	NM_001081175	ENSMUSG00000038855	Itpkb	1110033J02Rik|E130307H12Rik	inositol 1,4,5-trisphosphate 3-kinase B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-62228934-2	chr10	62228834	62229034	+	693.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_197996, intron 1 of 7)	intron (NM_197996, intron 1 of 7)	2284.0	NM_197996	70423.0	Mm.416781	NM_197996	ENSMUSG00000037031	Tspan15	1110036D12Rik|2700063A19Rik|AW048364|Tm4sf15	tetraspanin 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-25832334-2	chr17	25832234	25832434	+	838.375	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_037243)	promoter-TSS (NR_037243)	-906.0	NR_037243	100526479.0		NR_037243	ENSMUSG00000093076	Mir3082	mir-3082|mmu-mir-3082	microRNA 3082	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19322291-2	chr7	19322191	19322391	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ZP3AR|Satellite|Satellite	-12246.0	NM_001347586	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-81537640-2	chr17	81537540	81537740	+	560.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 2 of 8)	intron (NR_104580, intron 2 of 8)	200747.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-62248616-1	chr11	62248516	62248716	+	819.0	f0_balb.idr	promoter-TSS (NM_007413)	promoter-TSS (NM_007413)	-368.0	NM_007413	11541.0	Mm.40740	NM_007413	ENSMUSG00000018500	Adora2b	A2BAR|A2BR|A2b|AA2BR|AI480866|AI605384	adenosine A2b receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-50429539-2	chr16	50429439	50429639	+	735.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027444, intron 1 of 16)	intron (NM_027444, intron 1 of 16)	2850.0	NM_027444	70508.0	Mm.28940	NM_027444	ENSMUSG00000022641	Bbx	5530401J07Rik|5730403O13Rik	bobby sox HMG box containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83654303-2	chr6	83654203	83654403	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016751, intron 3 of 6)	L1MA10|LINE|L1	1813.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	-0.314793396209067	-0.301609654301956	-0.305933825299397	0.403083217984299	0.0658602656054209	-0.10455654391079	-0.304980518449672	-0.308684682479846	-0.627266232680341	0.799608661633719	1
Merged-chr6-83137062-3	chr6	83136927	83137127	+	756.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009106)	promoter-TSS (NM_009106)	-57.0	NM_009106	20166.0	Mm.4139	NM_009106	ENSMUSG00000034930	Rtkn	-	rhotekin	protein-coding	1.82476793315054	1.02968281130994	1.99576300151979	0.988965731356369	1.73795501618401	2.09033005554734	2.29729140603	0.99215700922309	0.911100534241383	0.468497167688024	0.924409990887115
Merged-chr1-180222240-3	chr1	180222119	180222319	+	973.2666630000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB2|LINE|L1	23731.0	NM_011183	19165.0	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	2.67016702216719	3.25422839872333	2.69906899122982	1.6915280149141	2.6928349318396	3.27780950034999	2.60511637952623	1.70004944791574	-0.0125759115229806	0.987914770573723	0.998431161219273
Merged-chr3-108199495-2	chr3	108199395	108199595	+	826.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_028061, exon 3 of 3)	exon (NM_028061, exon 3 of 3)	1339.0	NM_028061	72023.0	Mm.246391	NM_028061	ENSMUSG00000048796	Cyb561d1	1600010M23Rik|AI605489|AW457162	cytochrome b-561 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-120589253-2	chr4	120589157	120589357	+	696.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001101603, intron 1 of 2)	intron (NM_001101603, intron 1 of 2)	512.0	NM_001101603	667063.0	Mm.90231	NM_001101603	ENSMUSG00000091297	Gm8439	EG667063|Gm1664	predicted gene 8439	protein-coding	0.201284912323132	0.408691166760853	0.870036217928203	0.625634142209796	0.577439169557993	0.41360140108716	0.214982340900814	0.209815317579899	-1.30693804404132	0.487803989476511	1
Merged-chr12-85281384-2	chr12	85281284	85281484	+	793.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025421)	promoter-TSS (NM_025421)	-949.0	NM_025421	66204.0	Mm.311985	NM_025421	ENSMUSG00000008822	Acyp1	1110039O14Rik|AI325944	acylphosphatase 1, erythrocyte (common) type	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-84524206-4	chr2	84524094	84524294	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17321.0	NR_046046	672763.0	Mm.491046	NR_046046	ENSMUSG00000087362	Gm13710	-	predicted gene 13710	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-22699617-4	chr8	22699511	22699711	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159774, intron 2 of 21)	intron (NM_001159774, intron 2 of 21)	6972.0	NM_010546	16150.0	Mm.277886	NM_010546	ENSMUSG00000031537	Ikbkb	AI132552|IKK-2|IKK-beta|IKK2|IKK[b]|IKKbeta	inhibitor of kappaB kinase beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-65960343-2	chr18	65960246	65960446	+	803.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_145493, intron 2 of 2)	intron (NM_145493, intron 2 of 2)	9832.0	NM_145493	225644.0	Mm.192285	NM_145493	ENSMUSG00000024519	Cplx4	A930004D23Rik|CPXIV|Gm957	complexin 4	protein-coding	-0.185917370272282	0.224122051099273	-0.173258967664693	0.844301613649853	-0.184733428823223	-0.165796165220095	0.0294951270856859	-0.17716432482467	-3.1557545398167	0.167759262284493	1
Merged-chr13-95842140-3	chr13	95842010	95842210	+	920.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027711, intron 1 of 35)	intron (NM_027711, intron 1 of 35)	49812.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	2.55849633924578	4.15102154851369	3.50763697940114	1.66601443091901	4.04951628083855	4.50104882902717	4.26734088721819	4.04053648852844	1.35379343371079	0.0294676321829005	0.234347758018409
Merged-chr6-136660045-4	chr6	136659961	136660161	+	947.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025806, intron 1 of 10)	intron (NM_025806, intron 1 of 10)	1832.0	NM_025806	66857.0	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	3.28608134362034	2.24309961544839	2.16123657060681	3.31530469319438	3.37779510030374	2.80225484015465	3.7156467289242	3.92701593470109	1.05037189210211	0.114659790694476	0.530743892265557
Merged-chr8-123212046-4	chr8	123211930	123212130	+	870.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177279)	promoter-TSS (NM_177279)	758.0	NM_145606	234852.0	Mm.41596	NM_145606	ENSMUSG00000000743	Chmp1a	2900018H07Rik|Pcoln3	charged multivesicular body protein 1A	protein-coding	1.97481351490894	3.36791172182868	1.73307980699977	1.67632366482665	2.19872293868791	1.06918503174768	1.03513451605255	1.49996301061986	-1.98818769829238	0.0708678652208188	0.400816795024859
Merged-chr13-37312740-4	chr13	37312643	37312843	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32602.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	0.734302132277152	1.05245253196835	0.77535826296282	1.47068348812777	1.61107842381037	1.6016524152274	2.28441067647102	0.762938157824301	2.1934333550407	0.116197993778906	0.534018205832218
Merged-chr7-132748743-2	chr7	132748643	132748843	+	627.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347630, intron 3 of 3)	intron (NM_001347630, intron 3 of 3)	28173.0	NM_001347630	77938.0	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-40143369-4	chr4	40143269	40143469	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_007386, exon 1 of 21)	5' UTR (NM_007386, exon 1 of 21)	104.0	NM_007386	11428.0	Mm.331547	NM_007386	ENSMUSG00000028405	Aco1	Aco-1|Irebp|Irp1	aconitase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53029768-2	chr4	53029668	53029868	+	784.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17888.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-108186559-4	chr3	108186496	108186696	+	902.662476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001287093, exon 1 of 3)	5' UTR (NM_001287093, exon 1 of 3)	307.0	NM_146137	229715.0	Mm.275752	NM_146137	ENSMUSG00000050947	Amigo1	Amigo|ali2	adhesion molecule with Ig like domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-68759403-4	chr10	68759288	68759488	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177794, intron 4 of 5)	ORR1E|LTR|ERVL-MaLR	35642.0	NM_177794	327766.0	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-119809467-2	chr4	119809367	119809567	+	770.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-5211.0	NM_010657	16656.0	Mm.302758	NM_010657	ENSMUSG00000028634	Hivep3	2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3	human immunodeficiency virus type I enhancer binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-22029282-3	chr13	22029210	22029410	+	573.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6333.0	NM_175659	319168.0	Mm.250564	NM_175659	ENSMUSG00000069302	Hist1h2ah	-	histone cluster 1, H2ah	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-97064178-2	chr9	97064078	97064278	+	566.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-45823.0	NM_145134	211949.0	Mm.491271	NM_145134	ENSMUSG00000046997	Spsb4	D030068E18Rik|SSB-4|Ssb4	splA/ryanodine receptor domain and SOCS box containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16324382-2	chr7	16324264	16324464	+	833.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285892, intron 8 of 8)	B3|SINE|B2	14781.0	NM_133234	170770.0	Mm.7660	NM_133234	ENSMUSG00000002083	Bbc3	PUMA|PUMA/JFY1	BCL2 binding component 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-62764005-2	chr5	62763905	62764105	+	551.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178407, intron 1 of 32)	RSINE1|SINE|B4	2172.0	NM_178407	212285.0	Mm.244403	NM_178407	ENSMUSG00000037999	Arap2	Centd1|Gm148|mKIAA0580	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-44400611-3	chr18	44400516	44400716	+	718.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027490, intron 4 of 10)	B3|SINE|B2	20116.0	NM_027490	70640.0	Mm.87629	NM_027490	ENSMUSG00000024472	Dcp2	2410015D23Rik|5730537H01Rik|AL118268	decapping mRNA 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-37001418-3	chr1	37001322	37001522	+	635.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-61895.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-84829120-4	chr11	84829017	84829217	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_046281)	promoter-TSS (NR_046281)	-61.0	NR_046281	74995.0	Mm.84413	NR_046281	ENSMUSG00000086799	4930502E09Rik	-	RIKEN cDNA 4930502E09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-9865874-4	chr18	9865768	9865968	+	912.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130449, intron 7 of 9)	intron (NM_130449, intron 7 of 9)	-92312.0	NM_153552	225160.0	Mm.219648	NM_153552	ENSMUSG00000024287	Thoc1	3110002N20Rik|AW107452|NMP-84	THO complex 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-36816246-4	chr8	36816129	36816329	+	907.724976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001194940, intron 4 of 17)	intron (NM_001194940, intron 4 of 17)	-83175.0	NM_001194941	50768.0	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84991572-2	chr8	84991561	84991761	+	584.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133255, intron 3 of 21)	intron (NM_133255, intron 3 of 21)	1066.0	NM_001167991	170833.0	Mm.247775	NM_133255	ENSMUSG00000052566	Hook2	A630054I03Rik	hook microtubule tethering protein 2	protein-coding	1.62450558856479	1.49195596800327	1.30282865516329	1.11766072321644	1.63866511070303	1.50298928559824	1.31188927341013	1.12166689073866	0.0396115507779045	0.973226271044235	0.998431161219273
Merged-chr10-80159987-4	chr10	80159897	80160097	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 1 of 4)	CpG	-7842.0	NM_007705	12696.0	Mm.17898	NM_007705	ENSMUSG00000045193	Cirbp	Cirp|R74941	cold inducible RNA binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-59598000-4	chr14	59597902	59598102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001168535)	promoter-TSS (NM_001168535)	-43.0	NM_001168536	71891.0	Mm.439850	NM_027986	ENSMUSG00000021982	Cdadc1	2310010M10Rik|AI449174|AI463398|BB130816|NYD-SP15	cytidine and dCMP deaminase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122475272-5	chr8	122475216	122475416	+	927.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153775)	promoter-TSS (NM_153775)	748.0	NM_001033142	68718.0	Mm.34356	NM_001033142	ENSMUSG00000014470	Rnf166	1110031E24Rik|AW555115|Zfp313l	ring finger protein 166	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-182928035-2	chr1	182927935	182928135	+	579.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26753.0	NM_016928	53791.0	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120518823-2	chr11	120518723	120518923	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-11904.0	NM_008101	14527.0	Mm.22329	NM_008101	ENSMUSG00000025127	Gcgr	GR	glucagon receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-9116774-3	chr13	9116671	9116871	+	783.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172585, intron 1 of 17)	intron (NM_172585, intron 1 of 17)	22890.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45707013-4	chr7	45706921	45707121	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016974, intron 2 of 3)	CpG	1774.0	NM_016974	13170.0	Mm.24222	NM_016974	ENSMUSG00000059824	Dbp	-	D site albumin promoter binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-105261064-2	chr4	105260992	105261192	+	829.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	103745.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	-0.467312782632653	-0.705541624179779	-0.708372290742278	-0.710544090175946	-0.46135780665276	-0.704901115295764	-0.70774948821182	-0.308234707433233	1.33175700868977	0.634102103085152	1
Merged-chr4-126254977-4	chr4	126254852	126255052	+	951.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145970, intron 1 of 16)	intron (NM_001145970, intron 1 of 16)	1367.0	NM_144941	245877.0	Mm.266716	NM_144941	ENSMUSG00000028849	Map7d1	AV028413|BC019977|Mtap7d1|Parcc1|Rprc1|mKIAA1187	MAP7 domain containing 1	protein-coding	3.02652790105353	3.5345037387551	1.74628746406606	2.66439186290889	2.30572513592991	1.52501917657804	2.97707637857145	3.51631595415808	-0.183454258509463	0.830256422792436	0.998431161219273
Merged-chr18-16807165-2	chr18	16807065	16807265	+	655.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007664, intron 1 of 15)	intron (NM_007664, intron 1 of 15)	2081.0	NM_007664	12558.0	Mm.257437	NM_007664	ENSMUSG00000024304	Cdh2	CDHN|N-CAD|Ncad	cadherin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-40276923-2	chr4	40276823	40277023	+	903.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033305, intron 2 of 3)	intron (NM_001033305, intron 2 of 3)	2498.0	NM_001033305	230075.0	Mm.1103	NM_001033305	ENSMUSG00000071014	Ndufb6	CI-B17|Gm137	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70411396-2	chr11	70411296	70411496	+	679.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1365.0	NM_029231	75273.0	Mm.340601	NM_029231	ENSMUSG00000018921	Pelp1	4930563C04Rik|MNAR	proline, glutamic acid and leucine rich protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96629894-4	chr3	96629792	96629992	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025875)	promoter-TSS (NM_025875)	-36.0	NM_025875	60365.0	Mm.261972	NM_025875	ENSMUSG00000038374	Rbm8a	2310057C03Rik|AA673428|Rbm8	RNA binding motif protein 8a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-146701738-2	chr1	146701638	146701838	+	677.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_153539, exon 4 of 8)	exon (NM_153539, exon 4 of 8)	204051.0	NM_001145807	215378.0	Mm.441817	NM_153539	ENSMUSG00000035131	Brinp3	B830045N13Rik|Fam5c	bone morphogenetic protein/retinoic acid inducible neural specific 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-14328360-4	chr10	14328257	14328457	+	841.94165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR11A2|LTR|ERVK	216679.0	NM_001002268	215798.0	Mm.440142	NM_001002268	ENSMUSG00000039116	Adgrg6	1190004A11Rik|AI449247|AW045736|DREG|Gm222|Gpr126	adhesion G protein-coupled receptor G6	protein-coding	2.17418109182735	3.42741512605791	2.20442572471062	1.9489960851817	2.56938156072993	3.82470943166694	3.18502292672858	2.46029481370129	0.968276145806321	0.213784570673241	0.7035593879412
Merged-chr6-134630604-4	chr6	134630488	134630688	+	964.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026345, intron 1 of 3)	Charlie4a|DNA|hAT-Charlie	1900.0	NM_026345	67729.0	Mm.57648	NM_026345	ENSMUSG00000032718	Mansc1	9130403P13Rik	MANSC domain containing 1	protein-coding	-1.19186574914487	-0.830067904494403	-1.17769880891969	-0.883031245403495	-1.19141103351253	-1.16467215976488	-1.17527509089401	-1.18491921411486	-2.51583481658199	0.441047914216005	1
Merged-chr8-70904249-1	chr8	70904149	70904349	+	827.0	f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-1725.0	NM_173013	270058.0	Mm.248559	NM_173013	ENSMUSG00000019261	Map1s	6430517J16Rik|Bpy2ip1|Map8|Mtap1s|VCY2IP1	microtubule-associated protein 1S	protein-coding	2.20766629448918	2.74088232350169	1.07818669964134	1.81055620317122	1.7260130604611	1.38637198411326	2.24445944798107	1.06004315513151	-1.05717282658837	0.354850363241175	0.853449831367998
Merged-chr15-99499850-2	chr15	99499750	99499950	+	545.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028224, exon 12 of 12)	3' UTR (NM_028224, exon 12 of 12)	-25120.0	NM_029236	75284.0	Mm.32826	NM_029236	ENSMUSG00000037525	Bcdin3d	4930556P03Rik|AV138748	BCDIN3 domain containing	protein-coding	0.228461057978839	-0.0656469532787724	-0.073086565816069	-0.0788919275132129	0.236140968970767	-0.0639827583954543	-0.0714376050943178	1.13976551864898	2.74950217033836	0.210357172756425	1
Merged-chr1-131066640-2	chr1	131066540	131066740	+	636.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008551, intron 1 of 9)	B3|SINE|B2	31203.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133664480-1	chr4	133664380	133664580	+	588.0	f1_balb.idr	intron (NM_001145956, intron 2 of 2)	intron (NM_001145956, intron 2 of 2)	8167.0	NM_001145955	230801.0	Mm.217004	NM_178698	ENSMUSG00000043257	Pigv	B330013B03|D430024F16Rik	phosphatidylinositol glycan anchor biosynthesis, class V	protein-coding	0.581979367359222	0.629904224965377	0.845700508485487	0.999039686939908	0.782485972377322	0.885396784274634	2.00446386890132	1.61215218494951	2.80848466674082	0.0598580380555342	0.362538153557451
Merged-chr4-119339099-4	chr4	119339002	119339202	+	893.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001270446, intron 5 of 9)	intron (NM_001270446, intron 5 of 9)	-18579.0	NM_001110130	66101.0	Mm.304080	NM_028677	ENSMUSG00000060288	Ppih	1100001J08Rik|2010111B15Rik|4833408F11Rik|AI464484|CYP-20|CYPH|D4Wsu43e	peptidyl prolyl isomerase H	protein-coding	4.02398998260347	3.06378341569092	3.07843681712481	2.40155559563715	4.38843664798202	3.33437769116443	3.67515044056951	4.15103261216009	0.977881418384037	0.0969257786334167	0.483839492856643
Merged-chr19-10278872-4	chr19	10278778	10278978	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198114, intron 1 of 19)	intron (NM_198114, intron 1 of 19)	25999.0	NM_198114	269060.0	Mm.329718	NM_198114	ENSMUSG00000035735	Dagla	Nsddr	diacylglycerol lipase, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-88129088-3	chr15	88128965	88129165	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-185809.0	NR_045281	328579.0	Mm.146839	NR_045281	ENSMUSG00000116331	B230214G05Rik	B230214G05	RIKEN cDNA B230214G05 gene	ncRNA	2.13500833708413	2.49969425101747	2.75284066082324	1.83078984161101	4.87571170753773	4.66825779264293	5.40946609192696	4.04680061934194	3.68245027104917	5.53926229875003e-10	9.67865083403925e-08
Merged-chr10-75489896-2	chr10	75489796	75489996	+	866.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	27485.0	NM_175133	68778.0	Mm.29382	NM_175133	ENSMUSG00000033416	Gucd1	1110038D17Rik	guanylyl cyclase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-7775225-4	chr9	7775133	7775333	+	721.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133739, intron 2 of 4)	intron (NM_133739, intron 2 of 4)	-9157.0	NR_049191	100885830.0		NR_049191	ENSMUSG00000093615	Mir5618	Gm23685|mmu-mir-5618	microRNA 5618	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30238537-2	chr2	30238437	30238637	+	771.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028299)	promoter-TSS (NR_028299)	768.0	NM_177725	241296.0	Mm.389232	NM_177725	ENSMUSG00000007476	Lrrc8a	Lrrc8|mKIAA1437	leucine rich repeat containing 8A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-91043595-4	chr1	91043521	91043721	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111312, intron 1 of 12)	intron (NM_001111312, intron 1 of 12)	-9823.0	NM_001111311	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-78566939-2	chr11	78566839	78567039	+	825.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_008702)	TTS (NM_008702)	-16204.0	NM_133706	69071.0	Mm.29431	NM_133706	ENSMUSG00000037278	Tmem97	1810014L12Rik|AI115531|AL022956|D11Bhm182e	transmembrane protein 97	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43454691-4	chr4	43454633	43454833	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007654)	promoter-TSS (NM_007654)	-107.0	NM_007654	12517.0	Mm.188157	NM_007654	ENSMUSG00000028459	Cd72	CD72c|Ly-19|Ly-32|Ly-m19|Lyb-2	CD72 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-69186071-4	chr10	69185964	69186164	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22488.0	NM_001252636	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-11548241-3	chr2	11548153	11548353	+	837.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177758, intron 1 of 14)	ID4|SINE|ID	5676.0	NM_001177758	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-78382903-5	chr17	78382853	78383053	+	979.474976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360407, intron 7 of 9)	intron (NM_001360407, intron 7 of 9)	35199.0	NM_001285949	225020.0	Mm.236835	NM_199448	ENSMUSG00000056121	Fez2	9030616F16|D17Ertd315e	fasciculation and elongation protein zeta 2 (zygin II)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-60286267-2	chr2	60286167	60286367	+	642.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-1783.0	NM_001290660	66205.0	Mm.227281	NM_025422	ENSMUSG00000060703	Cd302	1110055L24Rik|AI159627	CD302 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-53423564-4	chr19	53423483	53423683	+	898.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32949.0	NM_172429	76479.0	Mm.313687	NM_172429	ENSMUSG00000025024	Smndc1	-	survival motor neuron domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-54245248-2	chr3	54245148	54245348	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253682, intron 3 of 11)	intron (NM_001253682, intron 3 of 11)	89191.0	NM_001253682	22066.0	Mm.10100	NM_016984	ENSMUSG00000027748	Trpc4	CCE1|STRPC4|Trp4|Trrp4	transient receptor potential cation channel, subfamily C, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-89960603-2	chr16	89960503	89960703	+	797.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145886, intron 1 of 27)	intron (NM_001145886, intron 1 of 27)	224.0	NM_009384	21844.0	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-100288272-2	chr6	100288172	100288372	+	579.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019743)	promoter-TSS (NM_019743)	-914.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-95843352-2	chr4	95843252	95843452	+	765.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113412, intron 12 of 15)	intron (NM_001113412, intron 12 of 15)	123683.0	NR_045777	319247.0	Mm.473527	NM_175680	ENSMUSG00000044125	9530080O11Rik	-	RIKEN cDNA 9530080O11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128439951-1	chr10	128439851	128440051	+	560.0	f1_balb.idr	non-coding (NR_104288, exon 7 of 7)	non-coding (NR_104288, exon 7 of 7)	-18729.0	NR_106183	102465894.0		NR_106183	ENSMUSG00000098957	Mir8105	Gm27346|mmu-mir-8105	microRNA 8105	ncRNA	0.646752924397231	0.698264111541834	0.681891818660106	1.990026372323	1.39357632099548	0.701893521923869	1.75591100302142	1.23052080976751	0.47404118497322	0.760640282571141	0.998431161219273
Merged-chr1-88216126-2	chr1	88216026	88216226	+	720.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_201642, intron 3 of 4)	intron (NM_201642, intron 3 of 4)	4167.0	NM_201645	394436.0	Mm.300095	NM_201645	ENSMUSG00000089960	Ugt1a1	Gnt1|UDPGT 1-1|UGT1A01|Udpgt-1a|UgtBr1	UDP glucuronosyltransferase 1 family, polypeptide A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-117388493-3	chr5	117388385	117388585	+	919.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028128, intron 1 of 10)	intron (NM_028128, intron 1 of 10)	538.0	NM_028128	72151.0	Mm.27997	NM_028128	ENSMUSG00000029363	Rfc5	2610020K06Rik|2610209F07Rik|36.5kDa|36kDa|Recc5	replication factor C (activator 1) 5	protein-coding	2.03915856083424	1.49690634019119	1.45079198975098	1.99334490090601	1.902468259332	1.3137363846108	1.6155795680247	1.04301141688945	-0.830306146638002	0.468397197263645	0.924409990887115
Merged-chr3-88648308-4	chr3	88648193	88648393	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001198911)	TTS (NM_001198911)	4849.0	NM_181817	242093.0	Mm.269130	NM_181817	ENSMUSG00000049741	Rxfp4	GPCR142|Gpr100|Rln3r2|SALPR	relaxin family peptide receptor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-108619964-4	chr4	108619870	108620070	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177045)	promoter-TSS (NM_177045)	14.0	NM_177045	319965.0	Mm.151129	NM_177045	ENSMUSG00000028582	Cc2d1b	A830039B04Rik|Freud2	coiled-coil and C2 domain containing 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105454260-2	chr8	105454160	105454360	+	595.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033371, intron 6 of 10)	intron (NM_001033371, intron 6 of 10)	17162.0	NM_026481	67971.0	Mm.29358	NM_026481	ENSMUSG00000014846	Tppp3	2700055K07Rik|CGI-38|Ceacam9|mmCGM8	tubulin polymerization-promoting protein family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-24069147-4	chr5	24069037	24069237	+	986.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31453.0	NM_026448	52323.0	Mm.273768	NM_026448	ENSMUSG00000028986	Klhl7	2700038B03Rik|D5Ertd363e|SBBI26	kelch-like 7	protein-coding	3.8137964566711	3.39777014136476	2.8103421808046	3.66301003582222	4.06429182053322	3.42285265776	2.6810626500435	3.80576717276535	0.181824519345339	0.754998716975499	0.998431161219273
Merged-chr5-123869113-2	chr5	123869042	123869242	+	732.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-3626.0	NM_030701	80885.0	Mm.440567	NM_030701	ENSMUSG00000045502	Hcar2	Gpr109a|Gpr109b|HM74|Niacr1|PUMA-G|Pumag|mHM74b	hydroxycarboxylic acid receptor 2	protein-coding	0.430214028857113	0.466341323429353	1.12962810143882	0.647620723358186	0.432533697824609	0.468928281135605	1.54778383374564	1.30431167538468	1.50031097417747	0.38736226708577	0.877010783839805
Merged-chr4-126968261-4	chr4	126968172	126968372	+	995.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357201)	promoter-TSS (NM_001357201)	-349.0	NM_001114399	67785.0	Mm.165401	NM_001114399	ENSMUSG00000042446	Zmym4	6330503C17Rik|AI480785|AW493829|CDIR|D630001M21|MYM|Zfp262|Znf262|mKIAA0425	zinc finger, MYM-type 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-12763518-2	chr16	12763418	12763618	+	688.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Rod|LINE|L1	-47872.0	NR_040507	75493.0	Mm.396146	NR_040507	ENSMUSG00000101565	1700003L19Rik	-	RIKEN cDNA 1700003L19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-81026038-2	chr13	81025938	81026138	+	746.333374	f1_balb.idr|f1_c57bl6.idr	intron (NR_015587, intron 1 of 1)	RMER17D2|LTR|ERVK	61964.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-36083421-2	chr4	36083321	36083521	+	602.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001165999, intron 5 of 7)	intron (NM_001165999, intron 5 of 7)	-238217.0	NM_175516	242384.0	Mm.132507	NM_175516	ENSMUSG00000045083	Lingo2	B230217C06Rik|Lern3|Lrrn6c	leucine rich repeat and Ig domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-170217076-2	chr2	170216976	170217176	+	738.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-74401.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-181616295-4	chr1	181616205	181616405	+	779.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-104854.0	NM_207280	403180.0	Mm.220754	NM_207280	ENSMUSG00000050625	Ccdc121	6530421E24Rik|Gm755	coiled-coil domain containing 121	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-80179592-2	chr11	80179492	80179692	+	873.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_172133)	TTS (NM_172133)	-4280.0	NM_028019	71956.0	Mm.22985	NM_028019	ENSMUSG00000020707	Rnf135	0610037N03Rik|2410006N06Rik	ring finger protein 135	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64210036-3	chr5	64209922	64210122	+	711.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019636, intron 2 of 19)	intron (NM_019636, intron 2 of 19)	-20335.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-19751201-4	chr14	19751086	19751286	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008695)	promoter-TSS (NM_008695)	-71.0	NM_008695	18074.0	Mm.20348	NM_008695	ENSMUSG00000021806	Nid2	AW547149|Ly111|NID-2|entactin-2|nidogen-2	nidogen 2	protein-coding	6.17762441764178	6.11958204225443	5.2741174344966	5.71322047120629	5.73193961788403	5.03240373898124	6.01282949112408	5.38361025807097	-0.308841477306201	0.298777677163114	0.80040218158746
Merged-chr15-95900069-4	chr15	95899973	95900173	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 3 of 19)	intron (NM_175344, intron 3 of 19)	-70001.0	NR_155276	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-34086093-2	chr11	34086092	34086292	+	868.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010696, intron 17 of 20)	intron (NM_010696, intron 17 of 20)	12362.0	NR_155520	76874.0	Mm.437529	NR_155520		4930469K13Rik	-	RIKEN cDNA 4930469K13 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31209594-2	chr14	31209494	31209694	+	710.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009393, intron 1 of 5)	intron (NM_009393, intron 1 of 5)	1282.0	NM_009393	21924.0	Mm.439921	NM_009393	ENSMUSG00000091898	Tnnc1	AI874626|TnC|cTnC|cTnI|tncc	troponin C, cardiac/slow skeletal	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-82909826-4	chr18	82909729	82909929	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1050.0	NM_183033	329003.0	Mm.326526	NM_183033	ENSMUSG00000058881	Zfp516	C330029B10Rik|D230016L03|Zfp26l|Znf516|mKIAA0222	zinc finger protein 516	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-10967138-4	chr16	10967030	10967230	+	940.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019980, intron 1 of 3)	intron (NM_019980, intron 1 of 3)	25991.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-53051022-2	chr19	53050922	53051122	+	712.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12368.0	NM_133216	170750.0	Mm.99776	NM_133216	ENSMUSG00000025027	Xpnpep1	D230045I08Rik|sAMP	X-prolyl aminopeptidase (aminopeptidase P) 1, soluble	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-90043085-4	chr16	90042960	90043160	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68361.0	NM_001145886	21844.0	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-54072682-4	chr13	54072592	54072792	+	850.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027324, intron 1 of 10)	intron (NM_027324, intron 1 of 10)	847.0	NM_027324	14057.0	Mm.134191	NM_027324	ENSMUSG00000021474	Sfxn1	2810002O05Rik|A930015P12Rik|f	sideroflexin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10843055-3	chr19	10842966	10843166	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_023044, exon 1 of 8)	exon (NM_023044, exon 1 of 8)	522.0	NM_023044	65221.0	Mm.27387	NM_023044	ENSMUSG00000024737	Slc15a3	Ci1|cI-1	solute carrier family 15, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-48413283-2	chr18	48413183	48413383	+	611.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3_Mus|LINE|L1	367948.0	NM_001025388	433182.0	Mm.70666	NM_001025388	ENSMUSG00000059040	Eno1b	EG433182|Eno1|Gm5506	enolase 1B, retrotransposed	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-69545188-3	chr13	69545087	69545287	+	880.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11323.0	NM_001169131	210106.0	Mm.315959	NM_198600	ENSMUSG00000034575	Papd7	LAK-1|POLK|Pols|TRF4|TRF4-1	PAP associated domain containing 7	protein-coding	1.37401966154081	1.42534690373653	1.05049848776277	1.02603341973509	1.88521838297416	1.69706667168541	0.843138876057588	1.03034232269127	0.811233980717732	0.530542868661031	0.950379381633191
Merged-chr10-21602067-2	chr10	21601967	21602167	+	565.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_027968, intron 2 of 2)	intron (NR_027968, intron 2 of 2)	8922.0	NR_027968	67692.0	Mm.54306	NM_183266	ENSMUSG00000050844	1700020N01Rik	-	RIKEN cDNA 1700020N01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191097820-3	chr1	191097771	191097971	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030060)	promoter-TSS (NM_030060)	-543.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-51816534-2	chr11	51816434	51816634	+	606.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_199299, exon 12 of 12)	3' UTR (NM_199299, exon 12 of 12)	40947.0	NM_199299	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-79831965-1	chr10	79831865	79832065	+	541.0	f1_c57bl6.idr	intron (NR_038088, intron 3 of 4)	intron (NR_038088, intron 3 of 4)	10944.0	NM_030218	78906.0	Mm.33087	NM_030218	ENSMUSG00000035852	Misp	9130017N09Rik	mitotic spindle positioning	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-62985876-4	chr18	62985758	62985958	+	859.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028017, intron 5 of 11)	MER102c|DNA|hAT-Charlie	7942.0	NM_028017	108123.0	Mm.292687	NM_028017	ENSMUSG00000024581	Napg	2400003O04Rik|SNARE	N-ethylmaleimide sensitive fusion protein attachment protein gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-103465121-2	chr5	103465021	103465221	+	563.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011204, intron 2 of 47)	intron (NM_011204, intron 2 of 47)	39929.0	NM_011204	19249.0	Mm.3414	NM_011204	ENSMUSG00000034573	Ptpn13	AI324989|PTP-BL|PTPL1|Ptpri|RIP	protein tyrosine phosphatase, non-receptor type 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-6976404-3	chr1	6976304	6976504	+	840.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB1|LINE|L1	-112516.0	NM_183028	319263.0	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-100538115-2	chr15	100538015	100538215	+	587.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355497, intron 2 of 15)	B1_Mur4|SINE|Alu	13893.0	NM_033476	21422.0	Mm.219040	NM_033476	ENSMUSG00000009733	Tfcp2	CP-2|CP2|D230015P20Rik|LBP-1c|LBP-1d|LBP1|LSF|Tcfcp2|UBP-1	transcription factor CP2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-105688926-5	chr3	105688901	105689101	+	802.273315	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1430.0	NM_017397	53975.0	Mm.272826	NM_017397	ENSMUSG00000027905	Ddx20	GEMIN3|dp103	DEAD (Asp-Glu-Ala-Asp) box polypeptide 20	protein-coding	1.36497674357942	2.90710641301469	2.27234551561025	1.1843531180181	2.10319632537898	1.52802370657646	2.29127200612753	2.50885520436457	0.0366791410885685	0.971910540391101	0.998431161219273
Merged-chr2-168011896-2	chr2	168011796	168011996	+	862.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1303.0	NM_001080708	69553.0	Mm.68454	NM_001080708	ENSMUSG00000074577	Ripor3	2310033K02Rik|Fam65c|Gm124	RIPOR family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-41633549-4	chr7	41633457	41633657	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360680)	promoter-TSS (NM_001360680)	26.0	NM_001360674	67607.0	Mm.384626	NM_023363	ENSMUSG00000074165	Zfp788	2810426N06Rik|AI256342|AI605193	zinc finger protein 788	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-27262571-2	chr8	27262471	27262671	+	748.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007918, intron 1 of 2)	intron (NM_007918, intron 1 of 2)	2244.0	NM_007918	13685.0	Mm.6700	NM_007918	ENSMUSG00000031490	Eif4ebp1	4e-bp1|AA959816|PHAS-I	eukaryotic translation initiation factor 4E binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-85161909-1	chr10	85161809	85162009	+	557.0	f0_balb.idr	intron (NM_007771, intron 1 of 12)	intron (NM_007771, intron 1 of 12)	23145.0	NM_007771	12952.0	Mm.26237	NM_007771	ENSMUSG00000020038	Cry1	AU020726|AU021000|Phll1	cryptochrome 1 (photolyase-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117538606-2	chr8	117538506	117538706	+	627.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_172285, intron 2 of 32)	ID_B1|SINE|B4	40331.0	NM_172285	234779.0	Mm.192699	NM_172285	ENSMUSG00000034330	Plcg2	PLC-gamma-2|PLCgamma2|Plcg-2	phospholipase C, gamma 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-106629043-2	chr1	106628943	106629143	+	697.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_009741, intron 1 of 1)	intron (NM_009741, intron 1 of 1)	-82412.0	NR_106164	102466254.0		NR_106164	ENSMUSG00000098344	Mir3473f	Gm27846|mmu-mir-3473f	microRNA 3473f	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-61090727-2	chr10	61090627	61090827	+	907.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025273, intron 1 of 3)	intron (NM_025273, intron 1 of 3)	1396.0	NM_025273	13180.0	Mm.39473	NM_025273	ENSMUSG00000020098	Pcbd1	Dcoh|Pcbd|Pcd|Phs	pterin 4 alpha carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3657383-2	chr12	3657283	3657483	+	770.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162465, intron 8 of 17)	intron (NM_001162465, intron 8 of 17)	84399.0	NM_007886	13528.0	Mm.286202	NM_007886	ENSMUSG00000071454	Dtnb	-	dystrobrevin, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-55776505-4	chr16	55776410	55776610	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45628.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-124663351-4	chr8	124663213	124663413	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175149)	promoter-TSS (NM_175149)	56.0	NM_175149	69551.0	Mm.261920	NM_175149	ENSMUSG00000031983	2310022B05Rik	-	RIKEN cDNA 2310022B05 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-42004067-2	chr19	42003943	42004143	+	913.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_145500, intron 1 of 2)	intron (NM_145500, intron 1 of 2)	22280.0	NM_145500	226122.0	Mm.22948	NM_145500	ENSMUSG00000025171	Ubtd1	BC016129	ubiquitin domain containing 1	protein-coding	-1.84354474832578	-1.81325489144778	-1.53416061964661	-1.82993901100912	-1.8414184563789	-1.81126990231468	-1.82034119297928	-1.82859217979378	-1.52252619601533	0.665276690233728	1
Merged-chr17-25398122-2	chr17	25398022	25398222	+	670.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163691, intron 2 of 34)	intron (NM_001163691, intron 2 of 34)	27569.0	NM_012034	26945.0	Mm.180108	NM_012034	ENSMUSG00000033200	Tpsg1	Prss31|Tmt	tryptase gamma 1	protein-coding	0.0436445152604005	-0.171639598319797	-0.174951931170348	0.0815911355097682	-0.181010326035471	0.258156119323451	-0.174224871209157	0.0855479552628953	0.633229175649166	0.780114385637588	1
Merged-chr11-95805812-3	chr11	95805722	95805922	+	825.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18678.0	NM_153104	237928.0	Mm.133075	NM_153104	ENSMUSG00000050860	Phospho1	D11Moh36|Phospo1	phosphatase, orphan 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-160617433-3	chr2	160617308	160617508	+	814.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28489.0	NM_009408	21969.0	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-57256656-2	chr9	57256556	57256756	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_028820, exon 2 of 3)	exon (NM_028820, exon 2 of 3)	5943.0	NM_028820	74211.0	Mm.428905	NM_028820	ENSMUSG00000032300	1700017B05Rik	AA682102|D9Ertd278e	RIKEN cDNA 1700017B05 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34141557-2	chr17	34141457	34141657	+	921.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3859.0	NM_010388	15000.0	Mm.195060	NM_010388	ENSMUSG00000037548	H2-DMb2	H-2Mb2|H2-Mb2	histocompatibility 2, class II, locus Mb2	protein-coding	1.19029237158425	0.712170715331454	0.701710690167405	1.36663648862955	1.29647152640722	0.924372669980486	1.42806724470065	0.874581113391236	0.533969715541624	0.713000100928893	0.998431161219273
Merged-chr8-57503871-2	chr8	57503771	57503971	+	563.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_126553, intron 2 of 3)	RMER13A|LTR|ERVK	-1944.0	NR_126556	78353.0	Mm.426240	NR_126553	ENSMUSG00000096917	2500002B13Rik	-	RIKEN cDNA 2500002B13 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-155585641-4	chr2	155585551	155585751	+	987.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291111, intron 1 of 11)	MIR|SINE|MIR	7159.0	NM_001291111	14854.0	Mm.252316	NM_008180	ENSMUSG00000027610	Gss	AI314904|GS-A/GS-B|GSH-S	glutathione synthetase	protein-coding	3.42445367230821	2.9423539354959	3.16765399264426	3.1686533908843	3.75962899685664	2.96436394794934	2.21947207806286	3.55490083269788	0.125942647802364	0.844614092709368	0.998431161219273
Merged-chr12-32910277-4	chr12	32910205	32910405	+	863.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43484.0	NR_044986	74076.0	Mm.50114	NR_044986	ENSMUSG00000097494	4933406C10Rik	-	RIKEN cDNA 4933406C10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-113918121-2	chr5	113918021	113918221	+	592.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-9415.0	NM_011779	23790.0	Mm.260158	NM_011779	ENSMUSG00000004530	Coro1c	AL022675|AW455561|AW548837	coronin, actin binding protein 1C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-102224687-4	chr15	102224622	102224822	+	880.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013566, exon 3 of 15)	exon (NM_013566, exon 3 of 15)	7213.0	NM_013566	16421.0	Mm.58	NM_013566	ENSMUSG00000001281	Itgb7	Ly69	integrin beta 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-130222334-4	chr5	130222225	130222425	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027854)	promoter-TSS (NM_027854)	-10.0	NM_027854	71667.0	Mm.258508	NM_027854	ENSMUSG00000053094	Tmem248	0610007L01Rik|A930023A16Rik|AW557951|G430067H08Rik	transmembrane protein 248	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-33957032-3	chr13	33956914	33957114	+	597.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040707, intron 3 of 4)	intron (NR_040707, intron 3 of 4)	-7645.0	NM_001163239	18105.0	Mm.264036	NM_020282	ENSMUSG00000046949	Nqo2	NMO2|Nmor2|Ox2	N-ribosyldihydronicotinamide quinone reductase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141672503-4	chr4	141672437	141672637	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8422.0	NM_001033150	69582.0	Mm.33220	NM_001033150	ENSMUSG00000028917	Plekhm2	2310034J19Rik|AI854247|mKIAA0842	pleckstrin homology domain containing, family M (with RUN domain) member 2	protein-coding	4.51317276646711	3.33107143015412	3.70911858210049	4.50330793278641	4.32783993816987	3.22688551225769	3.73847370543859	4.56362287855744	-0.0643799297734511	0.899468076934312	0.998431161219273
Merged-chr13-59976135-2	chr13	59976060	59976260	+	905.875	f0_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53551.0	NR_046142	328263.0	Mm.123405	NR_046142	ENSMUSG00000114531	A530065N20Rik	A530065N20	RIKEN cDNA A530046M15 gene	ncRNA	2.07611285453775	1.01271672950121	0.735646812372413	2.08182341364269	1.079932527029	1.40998315273072	0.739775263432965	0.723556972564767	-2.0949433439274	0.141556922183251	0.587275225572147
Merged-chr10-10653971-2	chr10	10653871	10654071	+	602.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR50B|LTR|ERVK	48026.0	NR_033630	382450.0	Mm.422788	NR_033630	ENSMUSG00000098065	Gm5177	EG382450	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28387609-2	chr7	28387509	28387709	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026042, intron 3 of 3)	PB1D10|SINE|Alu	5081.0	NM_026042	67224.0	Mm.41647	NM_026042	ENSMUSG00000003444	Med29	2810405O22Rik|AU020902|Ixl	mediator complex subunit 29	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89911390-4	chr3	89911243	89911443	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010559, intron 1 of 9)	intron (NM_010559, intron 1 of 9)	1853.0	NM_001310676	16194.0	Mm.2856	NM_010559	ENSMUSG00000027947	Il6ra	CD126|IL-6R|IL-6R-alpha|IL-6RA|Il6r	interleukin 6 receptor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-79987885-2	chr10	79987785	79987985	+	626.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007725)	promoter-TSS (NM_007725)	-715.0	NM_007725	12798.0	Mm.157770	NM_007725	ENSMUSG00000004665	Cnn2	AA408047|AI324678|Calpo2	calponin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-30949732-1	chr14	30949632	30949832	+	644.0	f1_c57bl6.idr	Intergenic	Intergenic	-1645.0	NM_001308328	23955.0	Mm.251494	NM_011849	ENSMUSG00000021918	Nek4	Stk2	NIMA (never in mitosis gene a)-related expressed kinase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-104171776-2	chr11	104171676	104171876	+	683.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001313928, intron 7 of 11)	intron (NM_001313928, intron 7 of 11)	-14551.0	NM_001082535	237958.0	Mm.117063	NM_199019	ENSMUSG00000049506	Sppl2c	4933407P14Rik|IMP5	signal peptide peptidase 2C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-82015903-2	chr11	82015803	82016003	+	575.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19674.0	NM_011333	20296.0	Mm.290320	NM_011333	ENSMUSG00000035385	Ccl2	AI323594|HC11|JE|MCAF|MCP-1|MCP1|SMC-CF|Scya2|Sigje	chemokine (C-C motif) ligand 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-92831499-2	chr1	92831399	92831599	+	980.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016696)	promoter-TSS (NM_016696)	-146.0	NM_016696	14733.0	Mm.297976	NM_016696	ENSMUSG00000034220	Gpc1	AI462976	glypican 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-120440971-2	chr5	120440871	120441071	+	573.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008499, exon 5 of 5)	3' UTR (NM_008499, exon 5 of 5)	9085.0	NM_008499	16873.0	Mm.5151	NM_008499	ENSMUSG00000029595	Lhx5	Lim2	LIM homeobox protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-69870528-2	chr10	69870428	69870628	+	877.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_170729, intron 9 of 40)	intron (NM_170729, intron 9 of 40)	-55004.0	NM_170687	11735.0	Mm.235960	NM_009670	ENSMUSG00000069601	Ank3	2900054D09Rik|AI314020|Ank-3|AnkG|Ankyrin-3|Ankyrin-G	ankyrin 3, epithelial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133678625-2	chr4	133678569	133678769	+	916.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001080819)	TTS (NM_001080819)	-5503.0	NM_001356466	230801.0	Mm.217004	NM_178698	ENSMUSG00000043257	Pigv	B330013B03|D430024F16Rik	phosphatidylinositol glycan anchor biosynthesis, class V	protein-coding	-1.8429182434137	-1.8129848525291	-1.82203695700074	-1.54461076807193	-1.84081697472045	-1.81102322372834	-1.81998775896484	-1.82814164409203	-1.43114970378833	0.684630132144154	1
Merged-chr10-127595488-3	chr10	127595394	127595594	+	809.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 6 of 88)	intron (NM_008512, intron 6 of 88)	25654.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-89387938-2	chr15	89387838	89388038	+	545.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001160178, exon 1 of 1)	exon (NM_001160178, exon 1 of 1)	3879.0	NM_001160178	546648.0		NM_001160178	ENSMUSG00000091680	Klhdc7b	EG546648|Gm306	kelch domain containing 7B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88488518-4	chr3	88488416	88488616	+	924.9249880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001002011, intron 1 of 11)	intron (NM_001002011, intron 1 of 11)	4796.0	NM_019390	16905.0	Mm.243014	NM_019390	ENSMUSG00000028063	Lmna	Dhe	lamin A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-12023896-3	chr4	12023798	12023998	+	769.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57324.0	NR_040577	100503636.0	Mm.209078	NR_040577		1700123M08Rik	1600025K15Rik	RIKEN cDNA 1700123M08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-154510415-4	chr3	154510346	154510546	+	885.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-86265.0	NM_009968	12972.0	Mm.374855	NM_009968	ENSMUSG00000028199	Cryz	Sez9	crystallin, zeta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-114848384-2	chr6	114848284	114848484	+	574.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253718, intron 19 of 19)	intron (NM_001253718, intron 19 of 19)	73437.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-79895443-4	chr17	79895278	79895478	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357752, intron 1 of 13)	CpG	745.0	NM_178050	56298.0	Mm.175403	NM_019717	ENSMUSG00000059811	Atl2	2010110I21Rik|AA407293|AV334690|Aip-2|Arl6ip2	atlastin GTPase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-120157656-2	chr6	120157556	120157756	+	579.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016718, intron 1 of 3)	intron (NM_016718, intron 1 of 3)	-36167.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-132384880-2	chr1	132384823	132385023	+	787.5	f0_c57.idr|f1_c57bl6.idr	intron (NM_178874, intron 1 of 4)	intron (NM_178874, intron 1 of 4)	5395.0	NM_001311107	68875.0	Mm.273785	NM_178874	ENSMUSG00000042066	Tmcc2	1110063G11Rik	transmembrane and coiled-coil domains 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-105266897-4	chr13	105266805	105267005	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360891, intron 2 of 7)	intron (NM_001360891, intron 2 of 7)	26109.0	NM_027934	71816.0	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	3.11101920527274	4.03793171306631	3.7030780300323	3.12653807738066	2.71247535245642	2.67918536871333	1.79702854899986	1.44726064047315	-2.24730046735786	0.00251895183442779	0.0398477467696619
Merged-chr15-88539042-3	chr15	88538961	88539161	+	941.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61241.0	NM_027306	70073.0	Mm.45306	NM_027306	ENSMUSG00000054117	Zdhhc25	1700030J15Rik	zinc finger, DHHC domain containing 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-61743312-2	chr18	61743212	61743412	+	630.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_178928, exon 11 of 19)	exon (NM_178928, exon 11 of 19)	16922.0	NR_029432	68982.0	Mm.441992	NR_029432	ENSMUSG00000098702	1500015A07Rik	-	RIKEN cDNA 1500015A07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125622639-3	chr6	125622532	125622732	+	815.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011708, intron 18 of 51)	intron (NM_011708, intron 18 of 51)	-67787.0	NM_153589	243634.0	Mm.333398	NM_153589	ENSMUSG00000038115	Ano2	BC033409|Tmem16b	anoctamin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-50970697-3	chr9	50970638	50970838	+	971.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178710, intron 3 of 15)	intron (NM_178710, intron 3 of 15)	38335.0	NM_178710	235344.0	Mm.104932	NM_178710	ENSMUSG00000037112	Sik2	G630080D20Rik|Snf1lk2	salt inducible kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-134246517-1	chr4	134246417	134246617	+	743.0	f1_c57bl6.idr	promoter-TSS (NM_024215)	promoter-TSS (NM_024215)	-926.0	NM_024215	68040.0	Mm.300404	NM_024215	ENSMUSG00000028840	Zfp593	3110024A21Rik|AV062409|E130106C14Rik|ZNF593	zinc finger protein 593	protein-coding	-0.735561205416019	-0.725802219566502	-0.729007106423444	-0.203745749985781	-0.734954117726819	-0.725078794455307	-0.728300872724531	-0.304367984195515	-0.384302916596532	0.897289854629639	1
Merged-chr13-10542912-1	chr13	10542812	10543012	+	612.0	f0_balb.idr	Intergenic	Intergenic	-182109.0	NM_033269	12671.0	Mm.342315	NM_033269	ENSMUSG00000046159	Chrm3	Chrm-3|M3|M3R	cholinergic receptor, muscarinic 3, cardiac	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126591269-1	chr8	126591169	126591369	+	1000.0	f0_balb.idr	exon (NM_001164598, exon 2 of 2)	exon (NM_001164598, exon 2 of 2)	2167.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80165151-4	chr10	80165004	80165204	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 1 of 4)	intron (NR_038088, intron 1 of 4)	-2735.0	NM_007705	12696.0	Mm.17898	NM_007705	ENSMUSG00000045193	Cirbp	Cirp|R74941	cold inducible RNA binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-27249221-2	chr7	27249121	27249321	+	586.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133770, intron 10 of 14)	MER44B|DNA|TcMar-Tigger	-9540.0	NM_010950	18223.0	Mm.458153	NM_010950	ENSMUSG00000063160	Numbl	nbl	numb-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-17616383-2	chr6	17616283	17616483	+	850.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20627.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-79768473-4	chr15	79768372	79768572	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017470, intron 1 of 3)	intron (NM_017470, intron 1 of 3)	5995.0	NM_017470	54152.0	Mm.288159	NM_017470	ENSMUSG00000022420	Dnal4	D15Ertd424e|Dnalc4	dynein, axonemal, light chain 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47873657-4	chr17	47873512	47873712	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028767, intron 13 of 16)	intron (NM_028767, intron 13 of 16)	-38921.0	NM_001109973	17240.0	Mm.329100	NM_010783	ENSMUSG00000032717	Mdfi	I-mf|I-mfa	MyoD family inhibitor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-111064823-3	chr11	111064724	111064924	+	834.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1340.0	NM_008425	16518.0	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding	2.16462657912065	1.73739716361675	2.45730434024748	2.0076420495755	2.55942920726527	2.6695469206497	2.58250023516614	2.59895711584787	1.11105106249366	0.170598017485768	0.637908273569781
Merged-chr2-167639713-2	chr2	167639613	167639813	+	584.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7708.0	NM_023230	66589.0	Mm.278783	NM_023230	ENSMUSG00000078923	Ube2v1	0610011J09Rik|AI256840|CROC-1|CROC1|D7Bwg1382e|UEV-1	ubiquitin-conjugating enzyme E2 variant 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-57238360-4	chr2	57238266	57238466	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010274)	promoter-TSS (NM_010274)	-16.0	NM_010274	14571.0	Mm.3711	NM_010274	ENSMUSG00000026827	Gpd2	AA408484|AI448216|AU021455|AW494132|GPDH|Gdm1|Gpd-m|Gpdh-m|TISP38	glycerol phosphate dehydrogenase 2, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-22010869-2	chr16	22010769	22010969	+	814.983337	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357424, intron 1 of 15)	B1_Mus2|SINE|Alu	1385.0	NM_001357424	75826.0	Mm.297431	NM_029457	ENSMUSG00000022855	Senp2	2310007L05Rik|4930538C18Rik|AI646780|AW554757|Smt3ip2|SuPr-1|mKIAA1331	SUMO/sentrin specific peptidase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-80315510-4	chr2	80315415	80315615	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024181)	promoter-TSS (NM_024181)	49.0	NM_024181	66861.0	Mm.21762	NM_024181	ENSMUSG00000027006	Dnajc10	1200006L06Rik|D2Ertd706e|ERdj5|JPDI	DnaJ heat shock protein family (Hsp40) member C10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-114813974-4	chr5	114813890	114814090	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027817)	promoter-TSS (NR_027817)	-14.0	NR_027817	66236.0	Mm.268546	NR_027817	ENSMUSG00000072694	1500011B03Rik	AI415201|AV141149|AW556386	RIKEN cDNA 1500011B03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55114895-4	chr14	55114783	55114983	+	844.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177049, intron 2 of 5)	CpG	2052.0	NM_177049	319984.0	Mm.19047	NM_177049	ENSMUSG00000022208	Jph4	9330157P13Rik|JP-4|JPHL1	junctophilin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-72413503-1	chr4	72413403	72413603	+	852.0	f0_balb.idr	Intergenic	Intergenic	212259.0	NR_027923	68285.0	Mm.37541	NR_027923		C630043F03Rik	AI851307	RIKEN cDNA C630043F03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-119733660-4	chr4	119733547	119733747	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-74702.0	NM_008191	14916.0	Mm.278	NM_008191	ENSMUSG00000032978	Guca2b	AV066530|Gcap2|Ugn	guanylate cyclase activator 2b (retina)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-31373218-4	chr6	31373125	31373325	+	927.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040300, intron 2 of 2)	intron (NR_040300, intron 2 of 2)	25548.0	NR_040300	100503869.0	Mm.370532	NR_040300	ENSMUSG00000086212	Mkln1os	Gm13845	muskelin 1, intracellular mediator containing kelch motifs, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-70660962-1	chr2	70660862	70661062	+	548.0	f1_balb.idr	promoter-TSS (NM_027352)	promoter-TSS (NM_027352)	-547.0	NR_027343	70231.0	Mm.271950	NM_027352	ENSMUSG00000014959	Gorasp2	0610011A07Rik|2410043M02Rik|5730520M13Rik|9430094F20Rik|AW552058|GOLPH2|GRASP55|GRS2|p59	golgi reassembly stacking protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-53467529-1	chr19	53467429	53467629	+	783.0	f0_balb.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-2733.0	NR_028427	381232.0	Mm.248624	NR_028427	ENSMUSG00000097636	Mirt1	4833407H14Rik|5430437C04Rik|5830416P10Rik|Gm10758	myocardial infarction associated transcript 1	ncRNA	0.842178263383042	0.891425894128225	0.875662917138267	1.71592417814915	1.71845946627713	1.48493901236576	1.56506239395322	1.72600295543402	1.7606281524151	0.196649734594713	0.678379389208559
Merged-chr16-91695360-4	chr16	91695264	91695464	+	886.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026994, intron 7 of 11)	intron (NM_026994, intron 7 of 11)	6466.0	NR_040389	100038392.0	Mm.440384	NR_040389	ENSMUSG00000085169	Gm10785	-	predicted gene 10785	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-40531029-4	chr3	40530927	40531127	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8115.0	NR_040445	100040882.0	Mm.272869	NR_040445	ENSMUSG00000037884	1700017G19Rik	-	RIKEN cDNA 1700017G19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-130857279-2	chr7	130857179	130857379	+	598.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8445.0	NM_133942	101476.0	Mm.323554	NM_133942	ENSMUSG00000040268	Plekha1	AA960558|C920009D07Rik|TAPP1	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-6389759-4	chr11	6389678	6389878	+	831.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-5347.0	NM_001005867	52915.0	Mm.1144	NM_028601	ENSMUSG00000041164	Zmiz2	Zimp7	zinc finger, MIZ-type containing 2	protein-coding	0.650621487111928	0.799513921467974	0.568397034780715	0.156973142445401	0.152140817195501	0.165964319210253	0.161417405680179	0.157574309002372	-4.13025080990858	0.0497238384327188	1
Merged-chr4-3954143-3	chr4	3954030	3954230	+	937.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14706.0	NR_104356	66433.0	Mm.27406	NM_181391	ENSMUSG00000042198	Chchd7	1810049H20Rik	coiled-coil-helix-coiled-coil-helix domain containing 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-41469314-4	chr4	41469210	41469410	+	838.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025539, intron 1 of 2)	intron (NM_025539, intron 1 of 2)	4162.0	NM_025539	66401.0	Mm.28574	NM_025539	ENSMUSG00000028443	Nudt2	2310051L06Rik|AA939917|APAH1	nudix (nucleoside diphosphate linked moiety X)-type motif 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-33471255-3	chr8	33471152	33471352	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	T-rich|Low_complexity|Low_complexity	-13059.0	NR_033589	628431.0	Mm.376526	NR_033589		Hmgb1-rs17	Hmg1-rs17	high mobility group box 1, related sequence 17	pseudo	1.68097426281375	1.8530860327231	0.90530092594052	2.10227951735057	0.619297021491274	0.678865655025552	0.660196050622881	0.643742805879339	-5.18845108247708	0.000704022953334975	0.0146929046582411
Merged-chr12-119377062-4	chr12	119376913	119377113	+	988.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66397.0	NM_001163136	238455.0	Mm.31376	NM_001163136	ENSMUSG00000041886	Macc1	4732474O15Rik|Gm267	metastasis associated in colon cancer 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-7052891-4	chr10	7052787	7052987	+	949.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29702.0	NM_001033391	320495.0	Mm.331674	NM_001033391	ENSMUSG00000064065	Ipcef1	A130090K04Rik	interaction protein for cytohesin exchange factors 1	protein-coding	3.62633895788544	3.10741594728024	1.88374001714576	3.26655414766076	3.70102569803173	3.13075740950441	1.89968511964673	3.28327896614228	0.0672323850437112	0.92820686240816	0.998431161219273
Merged-chr7-35742339-4	chr7	35742211	35742411	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178704, intron 3 of 18)	intron (NM_178704, intron 3 of 18)	12143.0	NM_178704	233115.0	Mm.257808	NM_178704	ENSMUSG00000043671	Dpy19l3	6030410G08|9330164H19Rik	dpy-19-like 3 (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-108692679-6	chr9	108692688	108692888	+	962.305542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008924, intron 1 of 10)	CpG	645.0	NM_008924	19087.0	Mm.253102	NM_008924	ENSMUSG00000032601	Prkar2a	1110061A24Rik|AI317181|AI836829|RII(alpha)	protein kinase, cAMP dependent regulatory, type II alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-37941619-3	chr15	37941524	37941724	+	588.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357023, intron 5 of 8)	intron (NM_001357023, intron 5 of 8)	19232.0	NM_001357023	382985.0	Mm.24738	NM_199476	ENSMUSG00000022292	Rrm2b	p53R2	ribonucleotide reductase M2 B (TP53 inducible)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-131426656-4	chr2	131426564	131426764	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65198.0	NM_001177834	228608.0	Mm.136586	NM_145533	ENSMUSG00000027333	Smox	B130066H01Rik|PAO|PAOh1|SMO	spermine oxidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-73621861-2	chr7	73621761	73621961	+	960.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-63466.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-60737306-2	chr13	60737209	60737409	+	894.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 18 of 26)	intron (NM_134062, intron 18 of 26)	49055.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-52537772-1	chr2	52537672	52537872	+	635.0	f0_balb.idr	intron (NM_001037099, intron 2 of 13)	intron (NM_001037099, intron 2 of 13)	20839.0	NM_146123	12298.0	Mm.330223	NM_146123	ENSMUSG00000017412	Cacnb4	3110038O15Rik|Cchb4|lh	calcium channel, voltage-dependent, beta 4 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-67543168-2	chr1	67543068	67543268	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	420141.0	NM_001080809	227231.0	Mm.343942	NM_001080809	ENSMUSG00000025991	Cps1	4732433M03Rik|CPS|D1Ucla3	carbamoyl-phosphate synthetase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-53717633-1	chr9	53717533	53717733	+	553.0	f0_balb.idr	Intergenic	Intergenic	-11401.0	NM_175562	270160.0	Mm.290285	NM_175562	ENSMUSG00000055069	Rab39	C230094F14Rik|Rab39a	RAB39, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-137416101-2	chr6	137416001	137416201	+	598.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011216, intron 14 of 26)	intron (NM_011216, intron 14 of 26)	5380.0	NM_001164403	19277.0	Mm.186361	NM_011216	ENSMUSG00000030223	Ptpro	D28|GLEPP1|PTPBK|PTPROt|PTPU2|PTPoc|PTPphi|Ptpn15|R-PTP-O	protein tyrosine phosphatase, receptor type, O	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-8827953-2	chr17	8827853	8828053	+	753.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_011866, intron 1 of 21)	intron (NM_011866, intron 1 of 21)	-22032.0	NM_001347321	23984.0	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-73244310-2	chr14	73244210	73244410	+	816.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009029, intron 17 of 26)	Tigger5|DNA|TcMar-Tigger	6419.0	NM_175116	67168.0	Mm.390681	NM_175116	ENSMUSG00000033446	Lpar6	2610302I02Rik|P2ry5|P2y5	lysophosphatidic acid receptor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-86418872-3	chr6	86418776	86418976	+	788.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164078, intron 3 of 11)	intron (NM_001164078, intron 3 of 11)	14657.0	NM_001164078	21841.0	Mm.333219	NM_011585	ENSMUSG00000071337	Tia1	2310050N03Rik|AI256674|TIA-1|mTIA-1	cytotoxic granule-associated RNA binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97403874-2	chr11	97403774	97403974	+	547.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41323.0	NM_138657	192157.0	Mm.34339	NM_138657	ENSMUSG00000038485	Socs7	2310063P06Rik|C85125|Nap4	suppressor of cytokine signaling 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-3579626-2	chr2	3579526	3579726	+	645.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	66561.0	NM_177647	227526.0	Mm.211455	NM_177647	ENSMUSG00000039496	Cdnf	9330140G23|Armetl1	cerebral dopamine neurotrophic factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-51219059-2	chr17	51218959	51219159	+	713.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3C|LINE|L1	-39707.0	NM_001285991	72238.0	Mm.120650	NM_028162	ENSMUSG00000023923	Tbc1d5	1600014N05Rik	TBC1 domain family, member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91962085-2	chr2	91961985	91962185	+	929.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_138306, intron 1 of 30)	intron (NM_138306, intron 1 of 30)	1478.0	NM_138306	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88621808-4	chr3	88621711	88621911	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198913, intron 1 of 21)	intron (NM_001198913, intron 1 of 21)	417.0	NM_001198912	16800.0	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	3.92200161059129	4.13581761870924	4.54471792757658	3.54873518472134	3.84834541757	3.42010066143733	3.83387415087782	2.95915403989172	-0.736415948945014	0.145437428044758	0.595944839973915
Merged-chr8-14938738-1	chr8	14938638	14938838	+	608.0	f0_balb.idr	intron (NM_001037736, intron 7 of 27)	MTD|LTR|ERVL-MaLR	27075.0	NM_001037736	234094.0	Mm.240298	NM_172751	ENSMUSG00000071176	Arhgef10	6430549H08Rik|mKIAA0294	Rho guanine nucleotide exchange factor (GEF) 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-5358119-4	chr5	5357985	5358185	+	936.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011074, intron 2 of 14)	intron (NM_011074, intron 2 of 14)	22166.0	NM_011074	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	2.05845608102248	2.21355704998855	1.60358536139972	1.71674890176076	2.15990988280331	2.23044673153407	1.6148875642788	1.16933141334514	-0.138820757523138	0.894507727855161	0.998431161219273
Merged-chr1-154058035-4	chr1	154057914	154058114	+	766.950012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-143173.0	NM_001204908	100503355.0	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	Gm10178|Gm203	zinc finger protein 648	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-8595781-2	chr11	8595681	8595881	+	648.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 3 of 30)	intron (NM_001083587, intron 3 of 30)	68754.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-26904422-6	chr5	26904327	26904527	+	748.305542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001198886)	promoter-TSS (NM_001198886)	-351.0	NM_001198886	13483.0	Mm.42078	NM_010075	ENSMUSG00000061576	Dpp6	B930011P16Rik|D5Buc3|D5Buc4|D5Buc5|DPP VI|Dpp-6|Gm1377|In(5)6H-p|Peplb|Rw	dipeptidylpeptidase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-71252440-4	chr4	71252323	71252523	+	798.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-717495.0	NM_172694	230316.0	Mm.251188	NM_172694	ENSMUSG00000039270	Megf9	4933405H16Rik|9630025C07|Egfl5|mKIAA0818	multiple EGF-like-domains 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-122464103-4	chr7	122464005	122464205	+	945.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316672, intron 5 of 16)	Lx8b|LINE|L1	174980.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-36942156-4	chr11	36942053	36942253	+	994.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011856, intron 1 of 28)	intron (NM_011856, intron 1 of 28)	2088.0	NM_001290702	23964.0	Mm.439889	NM_011856	ENSMUSG00000049336	Tenm2	Odz2|Odz3|Ten-2|Ten-m2	teneurin transmembrane protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52505873-4	chr13	52505785	52505985	+	907.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001024474, exon 2 of 2)	3' UTR (NM_001024474, exon 2 of 2)	24951.0	NM_001024474	68203.0	Mm.29362	NM_001024474	ENSMUSG00000047842	Diras2	2900052J15Rik|AI414999	DIRAS family, GTP-binding RAS-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-30944845-1	chr5	30944745	30944945	+	742.0	f1_c57bl6.idr	intron (NM_026770, intron 1 of 5)	L3|LINE|CR1	582.0	NM_001160149	68567.0	Mm.45127	NM_026770	ENSMUSG00000029161	Cgref1	1110004G24Rik|AW045201|Cgr11	cell growth regulator with EF hand domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-98181515-4	chr15	98181404	98181604	+	941.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13698.0	NM_177716	239650.0	Mm.54140	NM_177716	ENSMUSG00000029875	Ccdc184	5630400A08|AI836003	coiled-coil domain containing 184	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-42336915-2	chr6	42336815	42337015	+	565.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12275.0	NM_001113327	76156.0	Mm.234314	NM_029528	ENSMUSG00000029861	Fam131b	6330503C03Rik|6530406I18Rik|AV277466	family with sequence similarity 131, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-74453427-2	chr11	74453327	74453527	+	790.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001015046, intron 3 of 24)	L1M4|LINE|L1	88756.0	NM_001011851	258153.0	Mm.376124	NM_001011851	ENSMUSG00000058275	Olfr412	MOR127-5P	olfactory receptor 412	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-61104452-4	chr11	61104333	61104533	+	852.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER30|DNA|hAT-Charlie	-36402.0	NM_021349	57916.0	Mm.265915	NM_021349	ENSMUSG00000010142	Tnfrsf13b	1200009E08Rik|Taci	tumor necrosis factor receptor superfamily, member 13b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30594731-4	chr7	30594620	30594820	+	870.1124880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153655, intron 1 of 3)	intron (NR_153655, intron 1 of 3)	-1778.0	NM_021397	58206.0	Mm.116789	NM_021397	ENSMUSG00000006310	Zbtb32	4930524C15Rik|FAXF|FAZF|PLZP|Rog|Tzfp	zinc finger and BTB domain containing 32	protein-coding	0.619854753128428	0.882674728508754	0.676653595703361	0.467409387033195	0.62523490556106	0.891365197680199	1.58909582801664	0.659288794696964	1.75838821307769	0.248800323571362	0.74758343357745
Merged-chr11-78600720-4	chr11	78600607	78600807	+	866.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008702, intron 3 of 10)	intron (NM_008702, intron 3 of 10)	-49972.0	NM_133706	69071.0	Mm.29431	NM_133706	ENSMUSG00000037278	Tmem97	1810014L12Rik|AI115531|AL022956|D11Bhm182e	transmembrane protein 97	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-146577681-5	chr6	146577577	146577777	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347513)	promoter-TSS (NM_001347513)	158.0	NM_001362108	71177.0	Mm.271774	NM_138757	ENSMUSG00000040250	Ints13	4933424B01Rik|Asun|Spata30	integrator complex subunit 13	protein-coding	5.30120267698335	4.2516771907758	5.93748672586749	3.35089775310736	5.38289666967874	5.5185948355445	5.33264709365957	4.00458828451422	0.156594411312923	0.829190731060509	0.998431161219273
Merged-chr10-25410962-4	chr10	25410854	25411054	+	798.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013511, intron 1 of 19)	intron (NM_013511, intron 1 of 19)	2586.0	NM_013511	13822.0	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-75315165-2	chr10	75315065	75315265	+	770.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1712.0	NM_009630	11540.0	Mm.333734	NM_009630	ENSMUSG00000020178	Adora2a	A2AAR|A2aR|AA2AR	adenosine A2a receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-3085451-2	chr17	3085351	3085551	+	559.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1268.0	NR_003519	328734.0	Mm.335641	NR_003519		Pisd-ps2	D030013I16Rik	phosphatidylserine decarboxylase, pseudogene 2	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-111160356-4	chr10	111160243	111160443	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28|LTR|ERVL	-4459.0	NM_001003717	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-155563112-4	chr2	155563006	155563206	+	991.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008180)	TTS (NM_008180)	-6176.0	NR_040613	74945.0	Mm.401956	NR_040613	ENSMUSG00000086529	Acss2os	4930471I20Rik	acyl-CoA synthetase short-chain family member 2, opposite strand	ncRNA	3.6412743487842	3.21662444654633	1.5672908112051	4.16666325606243	2.55416279753976	3.42869722268111	2.65112643887101	2.69660404544505	-0.917906342873608	0.224128934591742	0.715693476906951
Merged-chr5-129908588-4	chr5	129908503	129908703	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026916)	promoter-TSS (NM_026916)	63.0	NM_026916	69034.0	Mm.211372	NM_026916	ENSMUSG00000095789	Nupr1l	1810010E01Rik|4930579G22Rik|Nupr2	nuclear protein transcriptional regulator 1 like	protein-coding	2.68827242070652	2.67657770575302	1.60531243778853	2.50271673609983	1.48988633642521	1.16706219101728	1.1366621123922	1.89135470555242	-2.62170300337029	0.0142520934922058	0.139855467055195
Merged-chr16-39053508-1	chr16	39053408	39053608	+	1000.0	f0_balb.idr	Intergenic	Intergenic	135442.0	NR_153800	102640746.0		NR_153800		Gm36742	-	predicted gene, 36742	ncRNA	1.20678510831381	1.51784552068088	1.06006497757985	1.43186970770058	2.09298737101112	2.08360627708945	1.90005991216286	1.83859549115361	2.32738533345473	0.038688802967337	0.280306919083399
Merged-chr1-131238640-3	chr1	131238543	131238743	+	778.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018750, intron 1 of 5)	intron (NM_018750, intron 1 of 5)	6535.0	NM_001313731	54354.0	Mm.248291	NM_018750	ENSMUSG00000026430	Rassf5	1300019G20Rik|Maxp1|Nore1|Nore1A|Nore1B|Rapl	Ras association (RalGDS/AF-6) domain family member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-23908434-3	chr5	23908346	23908546	+	952.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56213.0	NR_028536	100217436.0		NR_028536		Snord93	Gm22397|MBII-336	small nucleolar RNA, C/D box 93	snoRNA	2.30885230624981	2.48892279176609	1.59285353206842	2.47862361607784	5.21153124526306	4.82078711038764	4.21805943000106	4.78834215648892	3.81722130010857	1.49876665385292e-10	3.1003797091254e-08
Merged-chr19-46303871-2	chr19	46303770	46303970	+	692.75	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_001177369)	promoter-TSS (NM_001177369)	-867.0	NM_001177369	18034.0	Mm.102365	NM_019408	ENSMUSG00000025225	Nfkb2	NF-kappaB2|lyt|p49|p49/p100|p50B|p52	nuclear factor of kappa light polypeptide gene enhancer in B cells 2, p49/p100	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-149387322-1	chr3	149387222	149387422	+	987.0	f1_balb.idr	Intergenic	Intergenic	112585.0	NR_040591	381482.0	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-30115685-2	chr12	30115585	30115785	+	544.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009417, intron 5 of 16)	intron (NM_009417, intron 5 of 16)	16939.0	NM_009417	22018.0	Mm.4991	NM_009417	ENSMUSG00000020673	Tpo	-	thyroid peroxidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-83533201-3	chr9	83533093	83533293	+	853.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15145.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-60200462-2	chr11	60200362	60200562	+	823.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_105886)	TTS (NR_105886)	155.0	NR_105886	102465555.0		NR_105886	ENSMUSG00000098547	Mir6921	Gm27352|mmu-mir-6921	microRNA 6921	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-147334178-1	chr4	147334078	147334278	+	542.0	f1_balb.idr	intron (NM_001039209, intron 1 of 2)	intron (NM_001039209, intron 1 of 2)	158312.0	NM_001039209	195531.0	Mm.270762	NM_001039209	ENSMUSG00000078496	Zfp982	Gm13152	zinc finger protein 982	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-51853698-6	chr13	51853683	51853883	+	955.255554	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7108.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-148608082-1	chr6	148607982	148608182	+	549.0	f1_balb.idr	non-coding (NR_045867, exon 3 of 3)	non-coding (NR_045867, exon 3 of 3)	6227.0	NR_045867	622319.0	Mm.491049	NM_001037912	ENSMUSG00000070995	Gm6313	EG622319	predicted gene 6313	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-66391998-1	chr7	66391898	66392098	+	781.0	f1_c57bl6.idr	3' UTR (NM_053080, exon 13 of 13)	3' UTR (NM_053080, exon 13 of 13)	-3657.0	NM_146191	233328.0	Mm.33284	NM_146191	ENSMUSG00000015133	Lrrk1	AW319595|C230002E15Rik|D130026O16Rik|mKIAA1790	leucine-rich repeat kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-117836579-5	chr4	117836485	117836685	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008135, intron 1 of 13)	CpG	1327.0	NM_008135	14664.0	Mm.244549	NM_008135	ENSMUSG00000028542	Slc6a9	Glyt-1|Glyt1	solute carrier family 6 (neurotransmitter transporter, glycine), member 9	protein-coding	2.60576178117478	1.59520629457329	2.06660216857712	2.00935376357917	2.62738134260353	1.34274140073513	2.21308691408229	2.35931127796126	0.230756378400738	0.811560899350706	0.998431161219273
Merged-chr14-56689933-4	chr14	56689819	56690019	+	955.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153396, intron 9 of 12)	intron (NR_153396, intron 9 of 12)	11081.0	NR_046209	100503823.0	Mm.474486	NR_046209		Gm16973	-	predicted gene, 16973	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-68724568-4	chr10	68724503	68724703	+	992.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177794, intron 1 of 5)	intron (NM_177794, intron 1 of 5)	857.0	NM_177794	327766.0	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-67271616-2	chr7	67271516	67271716	+	820.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357325, intron 4 of 11)	intron (NM_001357325, intron 4 of 11)	49000.0	NM_001191051	75099.0	Mm.121691	NM_175215	ENSMUSG00000043831	Lysmd4	4930506D23Rik	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-66862882-4	chr1	66862793	66862993	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007381, intron 1 of 10)	CpG	416.0	NM_007381	11363.0	Mm.2445	NM_007381	ENSMUSG00000026003	Acadl	AA960361|AU018452|C79855|LCAD	acyl-Coenzyme A dehydrogenase, long-chain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-32683936-2	chr5	32683836	32684036	+	815.1999509999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205132, intron 11 of 11)	ORR1C2|LTR|ERVL-MaLR	62406.0	NM_001347332	320951.0	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-58315304-2	chr14	58315204	58315404	+	628.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	242618.0	NM_013518	14180.0	Mm.8846	NM_013518	ENSMUSG00000021974	Fgf9	Eks	fibroblast growth factor 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-30890386-2	chr5	30890286	30890486	+	655.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001048192, intron 2 of 16)	intron (NM_001048192, intron 2 of 16)	1052.0	NM_001294262	231093.0	Mm.440364	NM_174849	ENSMUSG00000029165	Agbl5	9430057O19Rik|CCP5	ATP/GTP binding protein-like 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-181592674-7	chr2	181592548	181592748	+	918.514282	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164597)	promoter-TSS (NM_001164597)	-187.0	NM_001164597	269401.0	Mm.386888	NM_001164597	ENSMUSG00000000823	Zfp512b	Gm632|Znf512b	zinc finger protein 512B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-106687597-2	chr14	106687489	106687689	+	644.466675	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-201069.0	NR_045938	73631.0	Mm.48862	NR_045938	ENSMUSG00000099794	1700128A07Rik	-	RIKEN cDNA 1700128A07 gene	ncRNA	2.39782729756638	2.88996215564889	3.16123115513247	3.35267195118056	3.56044673093074	3.40780526600131	4.27798525549957	4.28604550847933	1.45717806226908	0.0107296672657562	0.114464624648378
Merged-chr10-117840739-4	chr10	117840650	117840850	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024457, intron 1 of 7)	intron (NM_024457, intron 1 of 7)	5224.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-98261276-3	chr12	98261163	98261363	+	827.866699	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-1804.0	NM_008079	14420.0	Mm.5120	NM_008079	ENSMUSG00000021003	Galc	2310068B06Rik|A930008M05Rik|AW212969|AW413532|Gacy|twi|twitcher	galactosylceramidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-58129997-1	chr13	58129897	58130097	+	949.0	f1_balb.idr	Intergenic	MTC|LTR|ERVL-MaLR	-1441.0	NM_029872	77134.0	Mm.490274	NM_029872	ENSMUSG00000007836	Hnrnpa0	1110055B05Rik|3010025E17Rik|Hnrpa0|hnRNP A0	heterogeneous nuclear ribonucleoprotein A0	protein-coding	-1.25472594574093	-1.22821654753991	-1.23846893958796	-1.24689055967257	-0.984157887957643	-1.22599481141423	-0.918028007241226	-1.24538309370391	2.39436828104689	0.472022849635853	1
Merged-chr4-117253388-3	chr4	117253286	117253486	+	891.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029589, intron 2 of 3)	intron (NM_029589, intron 2 of 3)	1046.0	NM_029589	68777.0	Mm.331805	NM_026837	ENSMUSG00000048772	Tmem53	1110038M16Rik|1500001P22Rik|1700012A05Rik	transmembrane protein 53	protein-coding	-0.983354778669562	-0.966688639067326	-0.65288278454293	-0.979893471840633	-0.9828406603328	-0.96412324170639	-0.515932523477808	-0.979528524534782	0.597587473242695	0.851047375827952	1
Merged-chr2-44977895-3	chr2	44977841	44978041	+	945.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45236.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-129171841-4	chr6	129171756	129171956	+	930.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8759.0	NM_053109	93694.0	Mm.197536	NM_053109	ENSMUSG00000030157	Clec2d	Clr-b|Clrb|Ocil	C-type lectin domain family 2, member d	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-110978672-1	chr12	110978572	110978772	+	1000.0	f0_c57.idr	promoter-TSS (NM_001361917)	promoter-TSS (NM_001361917)	-54.0	NM_001361917	74251.0	Mm.250989	NM_175207	ENSMUSG00000037904	Ankrd9	2500003O20Rik	ankyrin repeat domain 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25264913-2	chr7	25264813	25265013	+	593.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2786.0	NM_001302811	71722.0	Mm.28833	NM_027882	ENSMUSG00000005442	Cic	1200010B10Rik|mKIAA0306	capicua transcriptional repressor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-78087145-2	chr11	78087045	78087245	+	678.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4B|LINE|L1	-6762.0	NM_022313	57837.0	Mm.21096	NM_022313	ENSMUSG00000020832	Eral1	2610524P08Rik|9130407C09Rik|AU019798|Era|M-ERA|MERA-S|MERA-W	Era (G-protein)-like 1 (E. coli)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-41604362-4	chr13	41604241	41604441	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1875.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-56419074-4	chr9	56418995	56419195	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025812, intron 1 of 9)	intron (NM_025812, intron 1 of 9)	476.0	NM_025812	66867.0	Mm.150856	NM_025812	ENSMUSG00000032329	Hmg20a	1200004E06Rik|5730490E10Rik|Hmgxb1|Ibraf	high mobility group 20A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-143036633-4	chr7	143036532	143036732	+	880.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110355, intron 4 of 4)	Lx3_Mus|LINE|L1	-16118.0	NM_133655	12520.0	Mm.806	NM_133655	ENSMUSG00000037706	Cd81	Tapa-1|Tapa1|Tspan28	CD81 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-172148072-4	chr1	172147996	172148196	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153555)	promoter-TSS (NM_153555)	81.0	NM_001357204	98193.0	Mm.159915	NM_153555	ENSMUSG00000026554	Dcaf8	AA408877|AA433120|AA792214|AU018973|C76055|D1Dau35e|D1Ucla4|H326|Wdr42a	DDB1 and CUL4 associated factor 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-113435341-4	chr13	113435283	113435483	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	67461.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16990252-3	chr7	16990174	16990374	+	827.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4314.0	NM_001101535	434130.0	Mm.459162	NM_001101535	ENSMUSG00000041117	Ccdc8	-	coiled-coil domain containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-84064613-4	chr2	84064527	84064727	+	801.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-123401.0	NM_027964	71861.0	Mm.116957	NM_027964	ENSMUSG00000034552	Zswim2	1700025P14Rik|4933437F18Rik|MEX	zinc finger SWIM-type containing 2	protein-coding	1.616185940178	2.38328686730887	0.830532733016796	0.810409566370822	1.84457073050612	2.4039455228849	0.836154716863089	0.813978143792129	0.178844121375088	0.940239805121169	0.998431161219273
Merged-chr3-15276094-4	chr3	15275989	15276189	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	56213.0	NM_001076679	751864.0	Mm.431296	NM_001076679	ENSMUSG00000078783	Gm9733	-	predicted gene 9733	protein-coding	3.67000455477912	3.9698741157149	2.94588520393906	4.40307053566066	2.83949645108293	3.62042269586103	3.66243564784913	2.73680644875503	-0.862367045781273	0.139562225736222	0.583573739910499
Merged-chr16-46497313-5	chr16	46497217	46497417	+	782.549988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021497)	promoter-TSS (NM_021497)	-350.0	NM_021497	58998.0	Mm.40477	NM_021495	ENSMUSG00000022656	Nectin3	2610301B19Rik|3000002N23Rik|4921513D19Rik|AA407785|AU016832|AW538082|CD113|Pvrl3	nectin cell adhesion molecule 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-9027456-4	chr13	9027357	9027557	+	885.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31445.0	NM_027000	69237.0	Mm.41800	NM_027000	ENSMUSG00000021149	Gtpbp4	2610028C09Rik|Crfg|Gtpbp3|NGB|Nog1	GTP binding protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-32588767-2	chr11	32588667	32588867	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001359177, exon 6 of 19)	exon (NM_001359177, exon 6 of 19)	-53788.0	NM_001271348	103583.0	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-15841724-4	chr6	15841626	15841826	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	121065.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-163994809-4	chr1	163994703	163994903	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_201364)	promoter-TSS (NM_201364)	-7.0	NM_201364	381306.0	Mm.28152	NM_201364	ENSMUSG00000041406	BC055324	-	cDNA sequence BC055324	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122158906-3	chr5	122158838	122159038	+	785.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013636, intron 1 of 6)	intron (NM_013636, intron 1 of 6)	659.0	NM_013636	19047.0	Mm.280784	NM_013636	ENSMUSG00000004455	Ppp1cc	PP-1G|PP1|dis2m1	protein phosphatase 1, catalytic subunit, gamma isoform	protein-coding	0.0769767894861459	1.3282552649083	0.0958215523760022	0.457663151030059	0.659340785103374	0.106772535907159	0.0978084260452409	0.0900449777334698	-1.86706400920609	0.363050083445864	1
Merged-chr4-124657091-1	chr4	124656991	124657191	+	749.0	f0_balb.idr	promoter-TSS (NM_011141)	promoter-TSS (NM_011141)	-555.0	NM_011141	18991.0	Mm.297371	NM_011141	ENSMUSG00000090125	Pou3f1	Oct-6|Oct6|Otf-6|Otf6|Scip|Test1|Tst-1|Tst1	POU domain, class 3, transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126553126-1	chr8	126553026	126553226	+	880.0	f1_balb.idr	Intergenic	Intergenic	40310.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	1.06215886715062	0.672866465434775	0.860277044152268	1.68577682223627	1.27898512265593	0.675383864279671	0.866418012120262	1.13500938220188	-0.55133963197769	0.705943009796857	0.998431161219273
Merged-chr13-40843595-3	chr13	40843459	40843659	+	797.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16209.0	NM_023887	14538.0	Mm.314757	NM_008105	ENSMUSG00000021360	Gcnt2	5330430K10Rik|IGnT|IGnTA|IGnTB|IGnTC	glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34021277-1	chr17	34021177	34021377	+	568.0	f1_c57bl6.idr	3' UTR (NM_009066, exon 7 of 7)	3' UTR (NM_009066, exon 7 of 7)	3403.0	NM_009066	19763.0	Mm.20343	NM_009066	ENSMUSG00000024325	Ring1	Ring1A	ring finger protein 1	protein-coding	-2.18233058068552	-2.15536956715525	-2.16352280018114	-2.04193253143548	-2.18043796738662	-2.15360272754651	-2.16167708693786	-2.16902129354933	-0.683654500252594	0.846597994014493	1
Merged-chr8-70896207-2	chr8	70896107	70896307	+	800.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_106034)	promoter-TSS (NR_106034)	-351.0	NR_002901	104370.0		NR_002901		Snora68	MBI-30|Rnu68	small nucleolar RNA, H/ACA box 68	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-56947469-4	chr4	56947350	56947550	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175518)	promoter-TSS (NM_175518)	-21.0	NM_175518	242474.0	Mm.296632	NM_175518	ENSMUSG00000055296	Tmem245	A630051L19Rik|AI957324|D730040F13Rik	transmembrane protein 245	protein-coding	5.65614233482709	6.0352578403749	6.09661957387345	5.59319871798459	5.9290920885882	5.49223294907139	6.07597101422605	6.2429197141605	0.121121133701297	0.635204809309991	0.982417279970648
Merged-chr6-97460677-3	chr6	97460580	97460780	+	846.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	Kanga2_a|DNA|TcMar-Tc2	-1394.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0.763019087156368	0.511342480068679	0.503013004230475	1.23441039679772	0.884762118107393	1.02744079414277	0.982121839153761	0.497691702096822	0.332319044675094	0.840510917624352	1
Merged-chr6-125361557-2	chr6	125361457	125361657	+	723.416626	f1_balb.idr|f1_c57bl6.idr	exon (NM_011609, exon 9 of 10)	exon (NM_011609, exon 9 of 10)	11834.0	NM_011609	21937.0	Mm.1258	NM_011609	ENSMUSG00000030341	Tnfrsf1a	CD120a|FPF|TNF-R|TNF-R-I|TNF-R1|TNF-R55|TNF-alphaR1|TNFAR|TNFR60|TNFRI|TNFRp55|TNFalpha-R1|Tnfr-2|Tnfr1|p55|p55-R	tumor necrosis factor receptor superfamily, member 1a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-135411164-4	chr1	135411075	135411275	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357578, intron 5 of 24)	intron (NM_001357578, intron 5 of 24)	19316.0	NM_153774	226432.0	Mm.271642	NM_153774	ENSMUSG00000041879	Ipo9	0710008K06Rik|AI845704|C78347|Imp9|Ranbp9	importin 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-95598304-4	chr1	95598198	95598398	+	993.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009183, intron 4 of 4)	intron (NM_009183, intron 4 of 4)	69296.0	NM_009183	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-122297847-4	chr7	122297746	122297946	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316672, intron 2 of 16)	intron (NM_001316672, intron 2 of 16)	8721.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-64375502-4	chr17	64375397	64375597	+	837.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43614.0	NM_001025309	224938.0	Mm.489681	NM_144859	ENSMUSG00000024083	Pja2	AI447901|AL022700|Neurodap1|mKIAA0438	praja ring finger ubiquitin ligase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-121702378-4	chr11	121702285	121702485	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144797)	promoter-TSS (NM_144797)	-42.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-8861619-1	chr10	8861519	8861719	+	614.0	f1_c57bl6.idr	intron (NM_175155, intron 1 of 19)	intron (NM_175155, intron 1 of 19)	24451.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	-0.475346413565445	-0.7134061209338	-0.716215844213131	-0.321820978158391	-0.4693982409331	-0.712770323923554	-0.715597666515307	-0.717995632351521	-1.25911859464901	0.65352083472096	1
Merged-chr1-177737635-4	chr1	177737544	177737744	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027077, intron 2 of 5)	(CA)n|Simple_repeat|Simple_repeat	7830.0	NM_027077	69428.0	Mm.84467	NM_027077	ENSMUSG00000015962	1700016C15Rik	-	RIKEN cDNA 1700016C15 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-108046349-2	chr13	108046249	108046449	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001048250, intron 1 of 2)	RMER6A|LTR|ERVK	1875.0	NM_001048250	75616.0	Mm.491164	NM_001048250	ENSMUSG00000071180	Smim15	2810008M24Rik	small integral membrane protein 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-98869118-2	chr13	98869018	98869218	+	605.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178716, intron 7 of 23)	intron (NM_178716, intron 7 of 23)	21924.0	NM_001048267	238799.0	Mm.173286	NM_178716	ENSMUSG00000009470	Tnpo1	AU021749|D13Ertd688e|IPO2|Kpnb2|MIP|MIP1|TRN	transportin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98199547-2	chr11	98199447	98199647	+	777.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-3758.0	NM_001109628	69131.0	Mm.260516	NM_026952	ENSMUSG00000003119	Cdk12	1810022J16Rik|AI646528|Crk7|Crkrs|D11Ertd752e|Pksc	cyclin-dependent kinase 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-155178469-4	chr4	155178357	155178557	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011385, intron 1 of 6)	intron (NM_011385, intron 1 of 6)	44078.0	NM_011385	20481.0	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-38989317-3	chr1	38989216	38989416	+	633.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026850, intron 1 of 5)	MTC|LTR|ERVL-MaLR	1502.0	NM_026850	68833.0	Mm.28121	NM_026850	ENSMUSG00000026078	Pdcl3	1110061A19Rik|C80025|Viaf1	phosducin-like 3	protein-coding	0.822304765763748	0.923744391702771	0.664845005264324	1.04201965521369	0.99041199711178	1.79063527939155	0.668223001149441	1.88806966254264	2.34755857488019	0.10192848058911	0.496322203777654
Merged-chr8-70816900-4	chr8	70816771	70816971	+	994.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008353, intron 11 of 15)	CpG	8422.0	NM_008353	16161.0	Mm.731	NM_008353	ENSMUSG00000000791	Il12rb1	CD212|IL-12R[b]	interleukin 12 receptor, beta 1	protein-coding	4.92397094365991	4.66079292190351	4.89076225676791	4.58924589878224	5.20965640146032	4.74779651041112	5.15386761109265	5.89581567068461	0.648613706752252	0.0583657353427281	0.356917478410832
Merged-chr9-49484318-1	chr9	49484218	49484418	+	744.0	f0_balb.idr	intron (NM_172770, intron 2 of 21)	intron (NM_172770, intron 2 of 21)	1907.0	NM_172770	235330.0	Mm.177413	NM_172770	ENSMUSG00000040219	Ttc12	E330017O07Rik	tetratricopeptide repeat domain 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-118082091-2	chr10	118081991	118082191	+	772.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-59696.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	1.469047870487	1.89595694734342	1.82941628139087	1.87577696782908	1.48019791285096	1.49097449573865	1.05661021520266	1.54989555030745	-1.28555634745708	0.251626803669858	0.749698831323701
Merged-chr11-103102911-4	chr11	103102819	103103019	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_025988, exon 2 of 11)	5' UTR (NM_025988, exon 2 of 11)	1231.0	NM_025988	67131.0	Mm.390367	NM_025988	ENSMUSG00000056938	Acbd4	2010009P05Rik|2010015A21Rik|AI849317	acyl-Coenzyme A binding domain containing 4	protein-coding	6.22079809767721	5.08065160644742	6.17357460313089	6.47161530962502	6.39902360714464	6.18011049493081	6.35122324943878	5.98509356093101	0.169045870077556	0.531632217150532	0.951191400754218
Merged-chr3-158036590-4	chr3	158036487	158036687	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289524)	promoter-TSS (NM_001289524)	52.0	NM_001093752	69207.0	Mm.223946	NM_026989	ENSMUSG00000055436	Srsf11	0610009J05Rik|2610019N13Rik|BF642805|Sfrs11	serine/arginine-rich splicing factor 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-4267287-2	chr9	4267187	4267387	+	774.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	42207.0	NM_026276	67618.0	Mm.33970	NM_026276	ENSMUSG00000025894	Aasdhppt	2010309J24Rik|2810407B07Rik|AASD-PPT|CGI-80|LYS2|LYS5	aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-97866800-3	chr3	97866632	97866832	+	676.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039376, intron 1 of 46)	L3|LINE|CR1	21975.0	NM_001289702	83679.0	Mm.129840	NM_031401	ENSMUSG00000038170	Pde4dip	4732458A06Rik|9430063L05Rik|C87016|D130016K21Rik|D3Bwg1078e|Usmg4|mKIAA0454	phosphodiesterase 4D interacting protein (myomegalin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-99562502-4	chr12	99562393	99562593	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1348.0	NR_136760	102639404.0	Mm.396324	NR_136760	ENSMUSG00000097917	Gm26839	-	predicted gene, 26839	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-116309126-2	chr7	116309030	116309230	+	560.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001305185)	promoter-TSS (NM_001305185)	-754.0	NM_001305185	233765.0	Mm.3741	NM_172743	ENSMUSG00000045659	Plekha7	A430081P20Rik|AI414265	pleckstrin homology domain containing, family A member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-86249549-1	chr17	86249449	86249649	+	640.0	f0_balb.idr	intron (NM_011104, intron 1 of 14)	intron (NM_011104, intron 1 of 14)	37629.0	NR_045435	72104.0	Mm.443401	NR_045435	ENSMUSG00000100738	2010106C02Rik	-	RIKEN cDNA 2010106C02 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-12085021-3	chr15	12084946	12085146	+	842.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32805.0	NM_011767	22763.0	Mm.273496	NM_011767	ENSMUSG00000022201	Zfr	C920030H05Rik	zinc finger RNA binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-90970059-2	chr10	90969959	90970159	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001128086, exon 25 of 25)	3' UTR (NM_001128086, exon 25 of 25)	112684.0	NM_001042558	11783.0	Mm.220289	NM_009684	ENSMUSG00000019979	Apaf1	6230400I06Rik|Apaf-1|Apaf1l|fog|mKIAA0413	apoptotic peptidase activating factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-121183885-4	chr6	121183764	121183964	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_130903, exon 1 of 7)	non-coding (NR_130903, exon 1 of 7)	197.0	NM_001304773	74043.0	Mm.491240	NM_028730	ENSMUSG00000067825	Pex26	4632428M11Rik	peroxisomal biogenesis factor 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-172370621-4	chr2	172370628	172370828	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291185)	promoter-TSS (NM_001291185)	-158.0	NM_011497	20878.0	Mm.249363	NM_011497	ENSMUSG00000027496	Aurka	AIRK1|ARK-1|AU019385|AW539821|Ark1|Aurora-A|Ayk1|IAK|IAK1|Stk6	aurora kinase A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-46010472-4	chr16	46010358	46010558	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001134480)	promoter-TSS (NM_001134480)	-45.0	NM_001134480	433022.0	Mm.380993	NM_001134480	ENSMUSG00000087141	Plcxd2	AW494639|EG433022	phosphatidylinositol-specific phospholipase C, X domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-109865738-3	chr7	109865686	109865886	+	654.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020052)	promoter-TSS (NM_020052)	-107.0	NM_020052	56788.0	Mm.40447	NM_020052	ENSMUSG00000007279	Scube2	4932442O19Rik|Cegf1|Cegp1	signal peptide, CUB domain, EGF-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-77547069-4	chr14	77546953	77547153	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253759, intron 7 of 19)	intron (NM_001253759, intron 7 of 19)	-40185.0	NR_033141	629678.0	Mm.390721	NM_001037935	ENSMUSG00000067973	Gm6994	EG629678	predicted gene 6994	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25785027-4	chr7	25784928	25785128	+	953.716675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009465, intron 4 of 19)	intron (NM_009465, intron 4 of 19)	3705.0	NM_001190974	26362.0	Mm.4128	NM_009465	ENSMUSG00000002602	Axl	AI323647|Ark|Tyro7|Ufo	AXL receptor tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-100604661-2	chr12	100604561	100604761	+	658.041626	f1_balb.idr|f1_c57bl6.idr	intron (NM_153587, intron 5 of 17)	intron (NM_153587, intron 5 of 17)	-83839.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-96824265-4	chr11	96824144	96824344	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001130454)	promoter-TSS (NM_001130454)	-117.0	NM_001130451	18023.0	Mm.6743	NM_008686	ENSMUSG00000038615	Nfe2l1	AA408798|AW212678|LCR-F1|Lcrf1|NRF1|TCF-11|TCF11	nuclear factor, erythroid derived 2,-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-125116746-4	chr8	125116665	125116865	+	976.19165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_174854, intron 3 of 12)	intron (NM_174854, intron 3 of 12)	62570.0	NM_174854	244667.0	Mm.233504	NM_170596	ENSMUSG00000043051	Disc1	-	disrupted in schizophrenia 1	protein-coding	4.6813672878138	3.99302176564702	5.5283855222097	4.10565079069587	4.99902290868838	4.18743035983814	5.26366230545178	4.96373594370331	0.225345118506722	0.595396617280557	0.971139446851758
Merged-chr19-32223117-2	chr19	32223017	32223217	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 5 of 9)	intron (NM_144792, intron 5 of 9)	-12104.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-56076084-4	chr9	56075986	56076186	+	860.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13890.0	NM_011193	19200.0	Mm.2534	NM_011193	ENSMUSG00000032322	Pstpip1	CD2BP1|def-2	proline-serine-threonine phosphatase-interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-116650573-2	chr4	116650473	116650673	+	559.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021473, intron 1 of 8)	B3|SINE|B2	1101.0	NM_021473	58810.0	Mm.30085	NM_021473	ENSMUSG00000028692	Akr1a1	2610201A18Rik|Akr1a4	aldo-keto reductase family 1, member A1 (aldehyde reductase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-132180872-1	chr2	132180772	132180972	+	959.0	f0_balb.idr	Intergenic	Intergenic	-35552.0	NM_001355430	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-16250270-2	chr14	16250160	16250360	+	551.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027695)	promoter-TSS (NM_027695)	-452.0	NM_027695	71147.0	Mm.197960	NM_027695	ENSMUSG00000021786	Oxsm	4933425A18Rik|C80494	3-oxoacyl-ACP synthase, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-6647211-2	chr15	6647111	6647311	+	724.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011815, intron 12 of 17)	intron (NM_011815, intron 12 of 17)	7092.0	NR_155272	102632231.0	Mm.444780	NR_155272		LOC102632231	-	uncharacterized LOC102632231	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119166147-2	chr11	119166047	119166247	+	722.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347625, intron 3 of 11)	L1MB3|LINE|L1	-12010.0	NR_105899	102465563.0		NR_105899	ENSMUSG00000098704	Mir6934	Gm27523|mmu-mir-6934	microRNA 6934	ncRNA	1.32910540223745	1.33835629890538	1.99766706830866	0.870820392233151	1.3406446107515	1.34852491558128	2.01571508425534	0.873234971874843	0.0407173225217516	0.974887873585326	0.998431161219273
Merged-chr19-3624715-1	chr19	3624615	3624815	+	688.0	f1_balb.idr	intron (NM_008513, intron 7 of 22)	RSINE1|SINE|B4	-48966.0	NM_028999	52036.0	Mm.284686	NM_028999	ENSMUSG00000024908	Ppp6r3	4930528G08Rik|9130026N02Rik|D19Bwg1430e|D19Ertd703e|Pp6r3|Ppcs3|Pptcs3|Sapl|Saps3|mKIAA1558	protein phosphatase 6, regulatory subunit 3	protein-coding	1.87392871210462	2.53573434673047	2.75168342011556	1.59479603833692	2.03256077729671	1.92793181953517	3.08308083008557	2.77080517038013	0.586941396386417	0.505102838078683	0.940939014262092
Merged-chr2-75907324-2	chr2	75907224	75907424	+	544.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172666, intron 17 of 19)	intron (NM_172666, intron 17 of 19)	31138.0	NM_028235	72421.0	Mm.275109	NM_028235	ENSMUSG00000075273	Ttc30b	2510042P03Rik|Tcc30b	tetratricopeptide repeat domain 30B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-90290393-2	chr18	90290293	90290493	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-219761.0	NM_198295	67988.0	Mm.268041	NM_198295	ENSMUSG00000024614	Tmx3	6430411B10Rik|A730024F05Rik|AV259382|Txndc10|mKIAA1830	thioredoxin-related transmembrane protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-21283927-2	chr5	21283827	21284027	+	866.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359876, intron 25 of 29)	intron (NM_001359876, intron 25 of 29)	-88746.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-31243128-2	chr6	31243028	31243228	+	778.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_040260, intron 1 of 5)	intron (NR_040260, intron 1 of 5)	22777.0	NR_040259	73652.0	Mm.441297	NR_040257	ENSMUSG00000087380	2210408F21Rik	-	RIKEN cDNA 2210408F21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-81767881-4	chr8	81767782	81767982	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001297593, intron 4 of 23)	intron (NM_001297593, intron 4 of 23)	425320.0	NM_001297593	234515.0	Mm.324468	NM_001024617	ENSMUSG00000037940	Inpp4b	E130107I17Rik	inositol polyphosphate-4-phosphatase, type II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-13987553-4	chr10	13987429	13987629	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358782, intron 1 of 9)	intron (NM_001358782, intron 1 of 9)	21150.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-99154381-3	chr12	99154288	99154488	+	935.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8420.0	NR_038130	67639.0	Mm.87374	NR_038130	ENSMUSG00000113210	4930474N09Rik	-	RIKEN cDNA 4930474N09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-41053512-4	chr8	41053358	41053558	+	899.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005863, intron 3 of 13)	intron (NM_001005863, intron 3 of 13)	1338.0	NM_001005864	102103.0	Mm.149438	NM_001005863	ENSMUSG00000045636	Mtus1	AI481402|ATBP135|Atip1|B430010I23Rik|B430305I03Rik|C85752|Cctsg1-440|MD44|MTSG1|mKIAA1288	mitochondrial tumor suppressor 1	protein-coding	0.307066470715805	-0.013931666749713	-0.0180745993282461	0.35894716035809	0.21535175842064	-0.0129934246073803	0.143325119574543	0.253400462371898	-0.175088737492592	0.931167717608873	1
Merged-chr9-124112757-4	chr9	124112674	124112874	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8769.0	NM_009917	12774.0	Mm.14302	NM_009917	ENSMUSG00000079227	Ccr5	AM4-7|CD195|Cmkbr5	chemokine (C-C motif) receptor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-59626109-4	chr4	59626004	59626204	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153158)	promoter-TSS (NM_153158)	-107.0	NM_001015681	230259.0	Mm.45688	NM_153158	ENSMUSG00000045071	E130308A19Rik	-	RIKEN cDNA E130308A19 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-84524023-2	chr11	84523923	84524123	+	657.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_008498, exon 1 of 5)	exon (NM_008498, exon 1 of 5)	1511.0	NM_008498	16869.0	Mm.4965	NM_008498	ENSMUSG00000018698	Lhx1	Lim1	LIM homeobox protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-4043151-2	chr10	4043051	4043251	+	666.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001170785, intron 17 of 27)	intron (NM_001170785, intron 17 of 27)	70076.0	NM_172308	270685.0	Mm.184752	NM_172308	ENSMUSG00000040675	Mthfd1l	2410004L15Rik|AI647056|Fthfsdc1	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	protein-coding	-1.01718117441201	-0.99914491666013	-0.561132518892537	-1.01384953832533	-1.01668645654511	-0.996644663764238	-1.00807068135569	-0.708811073536345	-0.613061619640165	0.849064987173192	1
Merged-chr16-24785973-3	chr16	24785846	24786046	+	811.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 8 of 12)	MTE2b|LTR|ERVL-MaLR	64091.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-30447866-3	chr16	30447754	30447954	+	850.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59324.0	NM_001128096	224088.0	Mm.8924	NM_001128094	ENSMUSG00000022533	Atp13a3	AU022875|Gm1745|Gm541|Gm542	ATPase type 13A3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-119063585-1	chr9	119063485	119063685	+	643.0	f1_c57bl6.idr	intron (NM_011700, intron 10 of 18)	intron (NM_011700, intron 10 of 18)	10807.0	NM_001164567	22351.0	Mm.83817	NM_011700	ENSMUSG00000038775	Vill	Villp	villin-like	protein-coding	2.13994309648686	2.90634998241627	3.01472819942132	2.00876762252798	2.44469139676642	1.28541961142982	1.25017125790861	1.86572053193504	-1.74288790142311	0.078518282257427	0.426787534215317
Merged-chr15-68364468-2	chr15	68364368	68364568	+	743.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23179.0	NR_029718	387228.0		NR_029718	ENSMUSG00000065437	Mir30d	Mirn30d|mir-30d|mmu-mir-30d	microRNA 30d	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-94565704-4	chr3	94565561	94565761	+	879.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001082484, intron 1 of 11)	intron (NM_001082484, intron 1 of 11)	17055.0	NM_001082484	76742.0	Mm.28160	NM_029721	ENSMUSG00000028136	Snx27	5730552M22Rik|ESTM45|ESTM47|R75405	sorting nexin family member 27	protein-coding	-0.313104368359168	-0.294172199942811	0.221737547539311	-0.305083798647731	-0.311903981697975	0.737631965245164	-0.298947902267785	-0.304246326818646	1.43808743953856	0.5658532521815	1
Merged-chr13-56352644-4	chr13	56352604	56352804	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10196.0	NR_046061	100038494.0	Mm.370447	NR_046061	ENSMUSG00000074885	Gm10782	-	predicted gene 10782	ncRNA	4.94654570337352	3.76818780351142	4.52540079124741	3.42210883090207	4.67466111467412	4.35872249310194	5.18348340043577	5.07816575853461	0.689375675541565	0.11421468180063	0.529910190349559
Merged-chr16-53659624-2	chr16	53659524	53659724	+	722.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR9E|LTR|ERVK	-843880.0	NR_040495	73820.0	Mm.60493	NR_040495		4930404A05Rik	-	RIKEN cDNA 4930404A05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-54080913-1	chr6	54080813	54081013	+	688.0	f1_balb.idr	intron (NM_001163640, intron 1 of 12)	MER102b|DNA|hAT-Charlie	40981.0	NM_001163640	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-56739382-2	chr19	56739282	56739482	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17010.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-80072204-4	chr15	80072119	80072319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6360.0	NR_028282	100302601.0		NR_028282	ENSMUSG00000077734	Snord83b	MBII-10	small nucleolar RNA, C/D box 83B	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-69417000-1	chr12	69416900	69417100	+	542.0	f1_balb.idr	Intergenic	Intergenic	44850.0	NM_007481	11845.0	Mm.27308	NM_007481	ENSMUSG00000044147	Arf6	AI788669|AW496366	ADP-ribosylation factor 6	protein-coding	1.74373790940762	2.25735923657274	0.988441634117492	0.732582272450145	1.58305619186676	0.770027120459208	0.751487499185073	1.15365749782298	-1.51920944018727	0.283062385288575	0.786153356178778
Merged-chr3-52019811-4	chr3	52019734	52019934	+	857.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	85172.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81858305-4	chr15	81858180	81858380	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020507)	promoter-TSS (NM_020507)	46.0	NM_020507	57259.0	Mm.323595	NM_020507	ENSMUSG00000048546	Tob2	2900090N22Rik|4930545K18Rik|AV071822|mKIAA1663	transducer of ERBB2, 2	protein-coding	4.19707155424536	2.81552550918267	4.14344967974622	2.9120613079843	4.0624693962835	4.19156981058694	3.37582792627477	3.68714172902408	0.257619189599944	0.645811501115297	0.984116759910594
Merged-chr1-172205935-4	chr1	172205861	172206061	+	724.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001329871, intron 1 of 3)	intron (NM_001329871, intron 1 of 3)	843.0	NM_001329871	18611.0	Mm.544	NM_011063	ENSMUSG00000013698	Pea15a	Mat1|PEA-15|Pea15|Pkcs15	phosphoprotein enriched in astrocytes 15A	protein-coding	3.06654280464004	2.4599523905606	2.63706507220689	2.67164298530029	2.21987492960241	2.74562993117812	2.65709067507651	2.95572363187459	-0.132215752258863	0.85438995150463	0.998431161219273
Merged-chr14-118820257-3	chr14	118820125	118820325	+	846.305542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160097, intron 1 of 3)	intron (NM_001160097, intron 1 of 3)	32354.0	NM_001160097	58187.0	Mm.390755	NM_021386	ENSMUSG00000022132	Cldn10	6720456I16Rik|Cldn10a|Cldn10b|D14Ertd728e	claudin 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-66823148-3	chr15	66823048	66823248	+	949.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009192, intron 1 of 8)	intron (NM_009192, intron 1 of 8)	8681.0	NM_001029841	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-37265987-3	chr19	37265911	37266111	+	910.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1916.0	NR_040298	77059.0	Mm.251476	NR_040298		4931408D14Rik	-	RIKEN cDNA 4931408D14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-60634729-4	chr14	60634627	60634827	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033272)	promoter-TSS (NM_001033272)	22.0	NM_001033272	219140.0	Mm.149776	NM_001033272	ENSMUSG00000021990	Spata13	C79050|ESTM11|X83327|mFLJ00298	spermatogenesis associated 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-11156992-3	chr4	11156883	11157083	+	924.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199105, intron 1 of 4)	intron (NM_001199105, intron 1 of 4)	542.0	NM_021897	60599.0	Mm.393018	NM_021897	ENSMUSG00000028211	Trp53inp1	2700057G22Rik|SIP|SIP18|SIP27|Stinp|Teap|p53DINP1	transformation related protein 53 inducible nuclear protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140755563-3	chr5	140755431	140755631	+	774.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31404.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-55968675-4	chr7	55968575	55968775	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015495, intron 1 of 5)	ORR1E-int|LTR|ERVL-MaLR	6144.0	NR_015495	320845.0	Mm.274484	NM_001033396		A230056P14Rik	-	RIKEN cDNA A230056P14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-64832332-4	chr11	64832241	64832441	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-146694.0	NM_023479	68626.0	Mm.157711	NM_023479	ENSMUSG00000020549	Elac2	1110017O07Rik|D11Wsu80e|Hpc2	elaC ribonuclease Z 2	protein-coding	3.99434391488966	3.85296244589708	3.22567530723826	3.84084346094281	4.29993166079499	4.03976537148074	4.23189664343303	4.82318245534091	0.845637727624501	0.0604451818036614	0.363651214506749
Merged-chr2-3285281-2	chr2	3285181	3285381	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008708, intron 1 of 13)	intron (NM_008708, intron 1 of 13)	1069.0	NM_001290370	18108.0	Mm.65021	NM_008708	ENSMUSG00000026643	Nmt2	A930001K02Rik|AI605445|AU044698|hNMT-2	N-myristoyltransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-84883964-4	chr3	84883886	84884086	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177773, intron 3 of 13)	B4|SINE|B4	19841.0	NM_001177774	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	1.69504852057697	2.16428389640551	2.18870231793633	1.07419908730143	1.43001192439206	2.18153867494215	2.20720300965374	1.07763726491441	-0.103306757819782	0.928572301553926	0.998431161219273
Merged-chr6-73210620-4	chr6	73210523	73210723	+	958.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164669, intron 2 of 76)	ORR1D1|LTR|ERVL-MaLR	11008.0	NM_001164669	330355.0	Mm.333166	NM_001164669	ENSMUSG00000052861	Dnah6	9830168K20|A730004I20Rik|Dnahc6|mKIAA1697|mdhc6	dynein, axonemal, heavy chain 6	protein-coding	4.03769580246064	3.41642978166752	4.25905947010319	2.78092882811956	3.14744260118136	2.99607688039455	2.42581645132265	2.91744923755664	-1.3421056755578	0.0303980148518426	0.239419288091296
Merged-chr11-31713793-1	chr11	31713693	31713893	+	1000.0	f1_c57bl6.idr	Intergenic	Intergenic	-41931.0	NM_001024919	69556.0	Mm.34183	NM_001024919	ENSMUSG00000044502	Bod1	2310022M17Rik|BOD2.1|Fam44b	biorientation of chromosomes in cell division 1	protein-coding	3.02334824225156	3.22371357465137	2.69501797946862	3.85759339132083	2.60738531413929	3.2475512284937	2.06470389196987	1.77087962067812	-1.29016052915697	0.0828737955127034	0.440614386363995
Merged-chr9-31385593-2	chr9	31385493	31385693	+	804.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172766)	promoter-TSS (NM_172766)	-599.0	NM_172766	235134.0	Mm.238146	NM_172766	ENSMUSG00000042185	Nfrkb	A530090G11Rik	nuclear factor related to kappa B binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27770399-8	chr2	27770246	27770446	+	828.752075	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	59763.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-56007362-2	chr16	56007262	56007462	+	683.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_173026, exon 11 of 11)	3' UTR (NM_173026, exon 11 of 11)	22355.0	NM_001356449	76302.0	Mm.310642	NM_001024622	ENSMUSG00000071533	Pcnp	1110018D06Rik|AI647035	PEST proteolytic signal containing nuclear protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-173019442-3	chr2	173019319	173019519	+	768.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2483.0	NM_019547	56190.0	Mm.485782	NM_019547	ENSMUSG00000027510	Rbm38	Rnpc1|Seb4|Seb4l	RNA binding motif protein 38	protein-coding	3.51546064376568	3.29590612396767	2.12685642466869	2.55922822609048	2.87465061366754	3.8280027312269	2.7908952554356	2.81879011178598	0.267022456987202	0.703338379067316	0.998431161219273
Merged-chr17-56468394-2	chr17	56468294	56468494	+	983.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252455, intron 1 of 27)	intron (NM_001252455, intron 1 of 27)	-6173.0	NM_001252456	19280.0	Mm.258771	NM_011218	ENSMUSG00000013236	Ptprs	AL022616|PTP|PTP-NU3|PTPNU-3|PTPsigma|Ptpt9|R-PTP-S|RPTPsigma	protein tyrosine phosphatase, receptor type, S	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76818706-4	chr15	76818642	76818842	+	826.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001168288)	promoter-TSS (NM_001168288)	-572.0	NM_198420	223666.0	Mm.322931	NM_198420	ENSMUSG00000033697	Arhgap39	9530053N22|AI843066|D15Wsu169e|Kiaa1688|Porf-2	Rho GTPase activating protein 39	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165876394-3	chr2	165876309	165876509	+	863.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001291158, exon 1 of 24)	5' UTR (NM_001291158, exon 1 of 24)	2028.0	NM_001291158	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	1.34762088096168	0.0791795505511401	0.0692237519943392	1.04390083979143	0.0501062310245391	0.0813955587140797	0.0714374902901533	0.0627737824704162	-4.51740619645645	0.0316970820445535	1
Merged-chr13-55405623-4	chr13	55405506	55405706	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011392, intron 8 of 12)	intron (NM_011392, intron 8 of 12)	5958.0	NM_011392	20505.0	Mm.276355	NM_011392	ENSMUSG00000021490	Slc34a1	NaPi-IIa|Npt2|Npt2a|Slc17a2	solute carrier family 34 (sodium phosphate), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-98374788-3	chr7	98374684	98374884	+	818.644409	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4c|LINE|L1	-13456.0	NM_001168539	244152.0	Mm.25317	NM_001024619	ENSMUSG00000049580	Tsku	9530051K01Rik|E2ig4|Lrrc54|Tsk	tsukushi, small leucine rich proteoglycan	protein-coding	1.42311893510325	1.99673672784323	1.92767036256922	1.24345304453242	2.45111339746184	2.56105165191845	2.47208957675239	3.00447083332328	2.40867208731476	0.0101538495703615	0.110017357445994
Merged-chr11-110365253-2	chr11	110365153	110365353	+	938.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-27537.0	NM_147219	217265.0	Mm.41942	NM_147219	ENSMUSG00000018800	Abca5	ABC13|B930033A02Rik|mKIAA1888	ATP-binding cassette, sub-family A (ABC1), member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-49183941-4	chr13	49183834	49184034	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3613.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-159233779-4	chr1	159233599	159233799	+	813.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011931, intron 1 of 19)	intron (NM_011931, intron 1 of 19)	1499.0	NM_011931	26374.0	Mm.328135	NM_011931	ENSMUSG00000040782	Cop1	AI316802|C80879|Rfwd2	COP1, E3 ubiquitin ligase	protein-coding	2.69606468125942	2.70394134832284	2.4918519748744	3.07208268381054	1.88595510057349	3.03876622001526	2.51104998639435	2.66292205109215	-0.349127898933038	0.641477812561704	0.982599433509505
Merged-chr1-177982774-4	chr1	177982668	177982868	+	967.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8630.0	NR_155538	545391.0	Mm.442974	NM_001034899	ENSMUSG00000091476	Gm16432	EG545391|EG666250	predicted gene 16432	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-113014470-2	chr5	113014370	113014570	+	590.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285806, intron 1 of 20)	intron (NM_001285806, intron 1 of 20)	1068.0	NM_001285806	320129.0	Mm.285619	NM_177078	ENSMUSG00000042249	Grk3	4833444A01Rik|AI851927|AW551196|Adrbk-2|Adrbk2|Bark-2	G protein-coupled receptor kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-96484996-1	chr7	96484896	96485096	+	863.5	f0_balb.idr	intron (NM_011858, intron 3 of 32)	intron (NM_011858, intron 3 of 32)	-143032.0	NR_046043	670727.0	Mm.421352	NR_046043	ENSMUSG00000085751	Gm15412	-	predicted gene 15412	ncRNA	-0.689458632491275	-0.680430004585567	-0.683404270776869	-0.685688190385218	-0.234497298969657	-0.492793132607503	-0.68274962874965	-0.394379600873598	3.15540633705452	0.241676601810852	1
Merged-chr10-80963818-4	chr10	80963719	80963919	+	963.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038655, intron 2 of 3)	intron (NM_001038655, intron 2 of 3)	33728.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-127774063-4	chr1	127773968	127774168	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045298)	promoter-TSS (NR_045298)	-14.0	NR_045298	100502745.0	Mm.440061	NR_045298	ENSMUSG00000102014	2900009J06Rik	-	RIKEN cDNA 2900009J06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-9383645-2	chr11	9383545	9383745	+	710.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178259, intron 31 of 61)	intron (NM_178259, intron 31 of 61)	191703.0	NM_178259	268379.0	Mm.39270	NM_178259	ENSMUSG00000004668	Abca13	9830132L24|A930002G16Rik|AI956815	ATP-binding cassette, sub-family A (ABC1), member 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-61585623-4	chr2	61585515	61585715	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011529, intron 1 of 7)	intron (NM_011529, intron 1 of 7)	7029.0	NM_011529	21353.0	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91190655-3	chr2	91190559	91190759	+	931.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355279, intron 5 of 9)	intron (NM_001355279, intron 5 of 9)	4376.0	NM_013839	22259.0	Mm.22690	NM_013839	ENSMUSG00000002108	Nr1h3	AU018371|LXR|RLD1|Unr1	nuclear receptor subfamily 1, group H, member 3	protein-coding	1.24333091521345	1.41204256175396	1.02638711704673	1.65738964723152	0.778573101865086	1.9941054212108	1.03352971494982	1.00552532617391	-0.146313657624495	0.911016677581733	0.998431161219273
Merged-chr6-124705467-2	chr6	124705367	124705567	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_145130)	TTS (NM_145130)	6711.0	NM_013536	14791.0	Mm.6390	NM_013536	ENSMUSG00000004268	Emg1	C2f|Grcc2f	EMG1 N1-specific pseudouridine methyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-50108242-3	chr11	50108140	50108340	+	881.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290750, intron 7 of 7)	intron (NM_001290750, intron 7 of 7)	-23120.0	NM_001290759	76795.0	Mm.290975	NM_029745	ENSMUSG00000036644	Tbc1d9b	-	TBC1 domain family, member 9B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-52118528-2	chr1	52118428	52118628	+	703.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357627)	promoter-TSS (NM_001357627)	-910.0	NM_001357627	20846.0	Mm.277406	NM_009283	ENSMUSG00000026104	Stat1	2010005J02Rik|AA408197	signal transducer and activator of transcription 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-100087938-2	chr12	100087838	100088038	+	632.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24393.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-104044307-1	chr5	104044207	104044407	+	630.0	f0_balb.idr	Intergenic	Intergenic	-2557.0	NM_028794	74167.0	Mm.241484	NM_028794	ENSMUSG00000029310	Nudt9	1190002C07Rik|ADPR-PPase|AI462474	nudix (nucleoside diphosphate linked moiety X)-type motif 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126775407-2	chr7	126775307	126775507	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_024228, intron 9 of 9)	intron (NM_024228, intron 9 of 9)	-1568.0	NM_026875	66090.0	Mm.27114	NM_025347	ENSMUSG00000042675	Ypel3	0610043B10Rik|1190001G19Rik|Suap	yippee like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30273471-3	chr7	30273370	30273570	+	765.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152437, intron 3 of 32)	intron (NR_152437, intron 3 of 32)	-6624.0	NR_144498	108167416.0	Mm.471845	NR_144498		LOC108167416	-	uncharacterized LOC108167416	ncRNA	0.974062618106871	2.66347225508439	1.04769911542123	1.02105434524193	2.4413881799206	2.84587361208863	1.91728019313637	1.69259960002728	1.43253884582219	0.226828080614586	0.719969129950742
Merged-chr1-170911352-2	chr1	170911252	170911452	+	666.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001029984, intron 3 of 5)	PB1D9|SINE|Alu	1589.0	NM_001029984	435653.0	Mm.337931	NM_001029984	ENSMUSG00000070524	Fcrlb	FREB-2|FREB2|FcRL2|Fcrlm2|Fcry|mFCRL2	Fc receptor-like B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-59142006-4	chr11	59141900	59142100	+	798.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5625.0	NM_199152	380698.0	Mm.339542	NM_199152	ENSMUSG00000061462	Obscn	BC046431|Gm878|UNC89	obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF	protein-coding	3.46164178271407	3.62158406268338	3.04151608623093	3.20450016173406	1.71209441043446	2.6999719875575	2.73900839908369	2.37889396792008	-1.67945881731111	0.0153157184999902	0.147289555139382
Merged-chr12-12176393-4	chr12	12176241	12176441	+	944.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-85798.0	NM_029758	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-117136067-3	chr5	117135992	117136192	+	837.9111330000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081308, intron 1 of 19)	intron (NM_001081308, intron 1 of 19)	2504.0	NM_183306	330177.0	Mm.24343	NM_183306	ENSMUSG00000061288	Taok3	2900006A08Rik|A130052D22|A430105I05Rik	TAO kinase 3	protein-coding	1.16983929940086	1.89469823278575	2.72405691656905	2.83100004410811	2.16599878658796	1.34116672834387	3.88310959038783	3.01137101658009	1.11729290393366	0.255093505592557	0.753346736474035
Merged-chr10-42018404-4	chr10	42018298	42018498	+	981.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001034858)	promoter-TSS (NM_001034858)	-16.0	NM_001034858	213402.0	Mm.211320	NM_001034858	ENSMUSG00000071324	Armc2	2610018I05Rik	armadillo repeat containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-56647708-3	chr13	56647603	56647803	+	796.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38117.0	NR_155548	21810.0	Mm.14455	NM_009369	ENSMUSG00000035493	Tgfbi	68kDa|AI181842|AI747162|Beta-ig|big-h3	transforming growth factor, beta induced	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19422160-2	chr7	19422060	19422260	+	608.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_073014)	promoter-TSS (NR_073014)	-743.0	NR_073015	100503495.0	Mm.410762	NR_073014	ENSMUSG00000040705	A930016O22Rik	-	RIKEN cDNA A930016O22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-115763457-4	chr3	115763359	115763559	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48404.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-64051141-3	chr7	64051000	64051200	+	930.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-102735.0	NM_001039104	17364.0	Mm.38875	NM_018752	ENSMUSG00000030523	Trpm1	4732499L03Rik|AI606771|Ltrpc1|Mlsn1	transient receptor potential cation channel, subfamily M, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-60245181-4	chr10	60245062	60245262	+	987.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25902.0	NM_016803	53374.0	Mm.12866	NM_016803	ENSMUSG00000057337	Chst3	C6ST|C6ST-1|GST-0	carbohydrate (chondroitin 6/keratan) sulfotransferase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-39718355-2	chr18	39718371	39718571	+	759.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55026.0	NM_011033	18459.0	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56289626-2	chr17	56289526	56289726	+	930.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_025836, intron 1 of 7)	intron (NM_025836, intron 1 of 7)	885.0	NM_025836	66905.0	Mm.311696	NM_025836	ENSMUSG00000024197	Plin3	1300012C15Rik|M6prbp1|Tip47	perilipin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-91682961-3	chr13	91682866	91683066	+	707.733337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360776, intron 9 of 15)	intron (NM_001360776, intron 9 of 15)	-58555.0	NM_028790	74156.0	Mm.275963	NM_028790	ENSMUSG00000021620	Acot12	1300004O04Rik|4930449F15Rik|AV027244|Cach|mCACH-1	acyl-CoA thioesterase 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67766344-2	chr10	67766244	67766444	+	832.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	146318.0	NM_178679	216049.0	Mm.268346	NM_178679	ENSMUSG00000037855	Zfp365	AI839779|AV340892|DBZ|Su48|Znf365|talanin	zinc finger protein 365	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-34368672-2	chr6	34368572	34368772	+	647.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_008012)	TTS (NM_008012)	14526.0	NM_008012	14187.0	Mm.5378	NM_008012	ENSMUSG00000029762	Akr1b8	FR-1|Fgfrp|Fgrp	aldo-keto reductase family 1, member B8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101379856-4	chr7	101379681	101379881	+	970.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040112, intron 1 of 30)	intron (NM_001040112, intron 1 of 30)	1659.0	NM_001040112	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-122560548-4	chr6	122560437	122560637	+	951.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009645, intron 2 of 4)	(CA)n|Simple_repeat|Simple_repeat	6728.0	NM_009645	11628.0	Mm.391503	NM_009645	ENSMUSG00000040627	Aicda	Aid|Arp2	activation-induced cytidine deaminase	protein-coding	3.28891293644321	4.06645334239167	4.31546764903403	5.05374733900543	3.71870578712458	4.30627954622786	4.55316972357475	4.79094016739762	0.0878672204286333	0.855165831993784	0.998431161219273
Merged-chr9-78022410-4	chr9	78022297	78022497	+	887.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger7|DNA|TcMar-Tigger	-29561.0	NM_008103	14531.0	Mm.1400	NM_008103	ENSMUSG00000023333	Gcm1	GCMa|Gcm-rs2|Gcm1-rs1|glide	glial cells missing homolog 1	protein-coding	2.38478434917307	1.50075594850663	1.45696037427377	2.72533287306911	1.95547961449619	1.24457160221808	2.1249589544737	2.27269782340129	-0.471279674617571	0.650268489099603	0.985422869512088
Merged-chr12-16881915-4	chr12	16881828	16882028	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13050.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	7.26482010060666	7.23679745670042	7.00092650004502	6.64017956745184	6.87580530519013	6.52172743110721	6.57659917070331	6.69026525902453	-0.4018687191076	0.0375820728042824	0.275729541075691
Merged-chr15-55388288-4	chr15	55388194	55388394	+	963.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181277, intron 13 of 47)	intron (NM_181277, intron 13 of 47)	80544.0	NM_181277	12818.0	Mm.297859	NM_181277	ENSMUSG00000022371	Col14a1	5730412L22Rik|AW108078	collagen, type XIV, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-112679256-3	chr12	112679221	112679421	+	979.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001100460, intron 1 of 1)	CpG	481.0	NM_001100460	382639.0	Mm.11350	NM_001100460	ENSMUSG00000037638	Zbtb42	EG382639|Gm5188|simiRP58	zinc finger and BTB domain containing 42	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-31366064-4	chr15	31365956	31366156	+	843.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027496, intron 1 of 3)	intron (NM_027496, intron 1 of 3)	1703.0	NM_001357923	67434.0	Mm.102470	NM_026153	ENSMUSG00000022237	Ankrd33b	0610012A05Rik|3021401C12Rik|5730557B15Rik	ankyrin repeat domain 33B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-47050410-4	chr4	47050288	47050488	+	663.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024136, intron 1 of 14)	intron (NM_001024136, intron 1 of 14)	6918.0	NR_151464	75691.0	Mm.86866	NM_001024136	ENSMUSG00000066191	Anks6	2210417J20Rik|Ankrd14|Gm635|SamCystin|Samd6|b2b1801.1Clo	ankyrin repeat and sterile alpha motif domain containing 6	protein-coding	1.69419635095438	0.988776145626456	1.7455757507106	0.960517616387161	1.70913103911444	1.40814120476779	1.76026612941368	1.46798019842491	0.628209563409029	0.613230816128306	0.976924404519883
Merged-chr4-133625019-3	chr4	133624890	133625090	+	860.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001017968, intron 2 of 7)	intron (NM_001017968, intron 2 of 7)	8439.0	NM_001017968	503610.0	Mm.331948	NM_001017968	ENSMUSG00000037553	Zdhhc18	-	zinc finger, DHHC domain containing 18	protein-coding	2.7121712642962	2.81904925073454	1.73937514079099	3.17121953115088	4.87673681864256	5.73574374904797	5.90729562915195	5.7270536469238	3.81362623747357	5.55419475133367e-15	3.12371384186725e-12
Merged-chr2-145468937-4	chr2	145468832	145469032	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053195, intron 3 of 16)	Tigger7|DNA|TcMar-Tigger	86050.0	NM_001037929	627302.0	Mm.445953	NM_001037929		Gm14092	-	predicted gene 14092	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81411823-3	chr10	81411716	81411916	+	910.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_152732)	TTS (NR_152732)	2241.0	NR_152732	102634174.0	Mm.392213	NR_152732	ENSMUSG00000085327	Gm16104	-	predicted gene 16104	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-32547762-1	chr16	32547662	32547862	+	795.75	f0_balb.idr	Intergenic	Intergenic	51481.0	NM_199309	245308.0	Mm.76859	NM_199309	ENSMUSG00000052363	Zdhhc19	Gm1744|Gm616	zinc finger, DHHC domain containing 19	protein-coding	2.50738092049218	1.26548966548704	1.86997629062565	2.09085617255704	1.39634487395696	1.76507063425369	2.6702664698339	2.66082143586454	0.53903213463188	0.596310148322482	0.971586575449917
Merged-chr1-181856103-3	chr1	181856052	181856252	+	940.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13751.0	NM_133815	98386.0	Mm.4538	NM_133815	ENSMUSG00000004880	Lbr	AI505894|ic	lamin B receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101003265-3	chr11	101003156	101003356	+	783.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6196.0	NM_016920	11975.0	Mm.340818	NM_016920	ENSMUSG00000019302	Atp6v0a1	AA959968|ATP6a1|Atp6n1|Atp6n1a|Atpv0a1|Vpp-1|Vpp1	ATPase, H+ transporting, lysosomal V0 subunit A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-110727842-2	chr11	110727734	110727934	+	662.0	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-240199.0	NM_010604	16517.0	Mm.30176	NM_010604	ENSMUSG00000051497	Kcnj16	6430410F18Rik|AI132396|Kir5.1	potassium inwardly-rectifying channel, subfamily J, member 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-91154123-4	chr10	91154064	91154264	+	960.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080129, intron 4 of 8)	intron (NM_001080129, intron 4 of 8)	16386.0	NM_001283048	21917.0	Mm.159684	NM_011605	ENSMUSG00000019961	Tmpo	5630400D24Rik|AI195756|AI606875|AW214352|AW547477|LAP2|TP	thymopoietin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-140952858-2	chr7	140952758	140952958	+	963.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2619.0	NM_053088	73835.0	Mm.389989	NM_053088	ENSMUSG00000025489	Ifitm5	1110003J06Rik|AW213665|Bril|DSPA1|Hrmp1|Hrtm1	interferon induced transmembrane protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-73218352-2	chr4	73218252	73218452	+	584.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2A1|LINE|L1	186720.0	NM_001013393	433719.0	Mm.348294	NM_001013393	ENSMUSG00000066137	Gm11487	-	predicted gene 11487	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-121641388-4	chr7	121641292	121641492	+	836.575012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001033173)	TTS (NM_001033173)	51489.0	NR_131051	69407.0		NR_131051	ENSMUSG00000108409	1700025J12Rik	-	RIKEN cDNA 1700025J12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118835168-2	chr9	118835068	118835268	+	549.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 6 of 13)	intron (NM_001113514, intron 6 of 13)	-91368.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-75764363-4	chr10	75764267	75764467	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172549)	promoter-TSS (NM_172549)	-10.0	NM_172549	104248.0	Mm.257404	NM_172549	ENSMUSG00000020196	Cabin1	A330070M20Rik|Cain|Ppp3in	calcineurin binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80829174-1	chr7	80829074	80829274	+	987.5	f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-25843.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	0.262689752447278	0.771730572240144	0.919329089255245	0.119109253727986	0.400000537233884	0.132492177024106	0.125774122977532	0.120016691089865	-2.63860488400324	0.197647718835523	1
Merged-chr5-140750501-2	chr5	140750401	140750601	+	721.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_173405, intron 7 of 7)	intron (NM_173405, intron 7 of 7)	26374.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-49236062-4	chr11	49235962	49236162	+	890.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8129.0	NM_010794	17308.0	Mm.196933	NM_010794	ENSMUSG00000020346	Mgat1	Mgat-1	mannoside acetylglucosaminyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-17828744-2	chr17	17828644	17828844	+	989.8000490000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1444.0	NR_029536	387230.0		NR_029536	ENSMUSG00000065396	Mir99b	Mirn99b|mmu-mir-99b	microRNA 99b	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-87921846-2	chr7	87921746	87921946	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081414, intron 4 of 9)	intron (NM_001081414, intron 4 of 9)	337678.0	NM_001143834	108071.0	Mm.235018	NM_001033224	ENSMUSG00000049583	Grm5	6430542K11Rik|AI850523|Glu5R|Gprc1e|mGluR5|mGluR5b	glutamate receptor, metabotropic 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-33842365-2	chr8	33842265	33842465	+	557.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001042675, intron 4 of 6)	intron (NM_001042675, intron 4 of 6)	87498.0	NM_019733	19663.0	Mm.323997	NM_019733	ENSMUSG00000031586	Rbpms	2010300K22Rik|2700019M19Rik|AU017537|RBP-MS|hermes	RNA binding protein gene with multiple splicing	protein-coding	2.22653109264769	2.36763405854208	2.16659200174078	2.60692730833539	2.14127061140293	2.10289884788984	1.88277171004498	2.61923841951577	-0.322923459409436	0.700953648584667	0.998431161219273
Merged-chr14-16302914-1	chr14	16302814	16303014	+	602.0	f0_balb.idr	intron (NM_021504, intron 10 of 11)	intron (NM_021504, intron 10 of 11)	-53106.0	NM_027695	71147.0	Mm.197960	NM_027695	ENSMUSG00000021786	Oxsm	4933425A18Rik|C80494	3-oxoacyl-ACP synthase, mitochondrial	protein-coding	0.994016915076264	1.03316233000383	0.725626961048335	0.708333246341845	0.803133529025869	1.1550919017059	0.564104145190425	0.711357081363575	-0.245570678696259	0.869580739426253	1
Merged-chr8-105333402-2	chr8	105333302	105333502	+	917.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_177699, exon 13 of 22)	exon (NM_177699, exon 13 of 22)	7038.0	NM_025486	66320.0	Mm.29990	NM_025486	ENSMUSG00000014856	Tmem208	1700006C06Rik|2610030K20Rik|Hspc171	transmembrane protein 208	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-137531108-4	chr5	137531031	137531231	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010312, intron 1 of 9)	CpG	-1537.0	NR_105846	102465227.0		NR_105846	ENSMUSG00000098597	Mir6418	Gm27629|mir-6418|mmu-mir-6418	microRNA 6418	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-28733418-3	chr12	28733256	28733456	+	892.0833130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161410, intron 3 of 11)	B1_Mm|SINE|Alu	17038.0	NM_001161410	217449.0	Mm.132006	NM_178811	ENSMUSG00000020628	Trappc12	CGI-87|D930014A20Rik|Ttc15	trafficking protein particle complex 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-67542599-2	chr15	67542478	67542678	+	900.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	315809.0	NR_045140	69334.0	Mm.63770	NR_045140	ENSMUSG00000102069	1700012I11Rik	-	RIKEN cDNA 1700012I11 gene	ncRNA	1.65818026190993	0.960907990969714	0.939171394022142	2.05870347047647	1.87136952077393	0.965707121357303	2.38689909393952	1.34608332674456	0.73718187717747	0.569874488469757	0.962718661854691
Merged-chr12-3349091-2	chr12	3348991	3349191	+	983.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CATA)n|Simple_repeat|Simple_repeat	-16041.0	NM_008445	16570.0	Mm.7688	NM_008445	ENSMUSG00000020668	Kif3c	mKIAA4058	kinesin family member 3C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-21506369-4	chr13	21506281	21506481	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_026798, intron 1 of 1)	intron (NR_026798, intron 1 of 1)	143.0	NR_026798	100038371.0	Mm.133328	NR_026798		Zfp389	-	zinc finger protein 389	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-120606691-2	chr5	120606591	120606791	+	711.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_029408, exon 5 of 5)	exon (NM_029408, exon 5 of 5)	5898.0	NM_029096	100764.0	Mm.9654	NM_029096	ENSMUSG00000029600	Rita1	1110008J03Rik|AI853657|C86297|Rita	RBPJ interacting and tubulin associated 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-109179935-2	chr3	109179835	109180035	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56786.0	NM_172685	229731.0	Mm.33574	NM_172685	ENSMUSG00000040322	Slc25a24	2610016M12Rik	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-19121747-1	chr10	19121647	19121847	+	699.5	f0_balb.idr	Intergenic	Intergenic	-20002.0	NR_038021	100504265.0	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	1.1071241976467	1.26010154078042	1.2135573317008	2.46445942806502	3.40435681526522	2.53908751161504	3.48796708931704	2.47876782141401	2.98441628464371	0.00250727047312482	0.0398264313370056
Merged-chr3-144586852-4	chr3	144586764	144586964	+	852.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053102, intron 2 of 4)	intron (NM_053102, intron 2 of 4)	16437.0	NM_053102	93684.0	Mm.29812	NM_053102	ENSMUSG00000037072	Selenof	9430015P09Rik|Sep15	selenoprotein F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126588808-4	chr8	126588724	126588924	+	953.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001164598, exon 2 of 2)	3' UTR (NM_001164598, exon 2 of 2)	4612.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-115759718-4	chr6	115759622	115759822	+	893.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144805)	promoter-TSS (NM_144805)	-723.0	NM_144805	94346.0	Mm.29739	NM_144805	ENSMUSG00000059900	Tmem40	9030407H20Rik|AV091463|W64236	transmembrane protein 40	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-149940411-4	chr1	149940305	149940505	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008869, intron 1 of 17)	intron (NM_008869, intron 1 of 17)	-17966.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75467979-3	chr11	75467833	75468033	+	956.3833619999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291156)	promoter-TSS (NM_001291156)	-117.0	NM_001291156	380712.0	Mm.41393	NM_027249	ENSMUSG00000038217	Tlcd2	-	TLC domain containing 2	protein-coding	0.907721407426914	1.19540739361521	1.16199827224527	1.69170854670529	1.50678279861585	1.3970908284952	1.64146462402604	2.13308272321132	1.50740678593875	0.214037137111427	0.703952185050138
Merged-chr7-30331605-1	chr7	30331505	30331705	+	637.0	f1_c57bl6.idr	Intergenic	Intergenic	-9230.0	NM_001033140	68332.0	Mm.6844	NM_001033140	ENSMUSG00000074211	Sdhaf1	0610010E21Rik|AI430885|AW490662|Lyrm8	succinate dehydrogenase complex assembly factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-80878940-2	chr8	80878791	80878991	+	712.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_021356, intron 1 of 9)	intron (NM_021356, intron 1 of 9)	1588.0	NM_021356	14388.0	Mm.277409	NM_021356	ENSMUSG00000031714	Gab1	AA408973|AW107238	growth factor receptor bound protein 2-associated protein 1	protein-coding	0.628748367925208	0.875237688207496	0.28302269974164	0.434689703075506	0.531153754940552	0.634375524072139	0.28433324777667	0.437614037940824	-0.67567226822448	0.696161019263358	1
Merged-chr13-51099553-4	chr13	51099445	51099645	+	907.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_029463, exon 1 of 1)	non-coding (NR_029463, exon 1 of 1)	1182.0	NR_029463	77428.0	Mm.405630	NR_029463		9430083A17Rik	-	RIKEN cDNA 9430083A17 gene	ncRNA	3.50084613488659	2.63578814456736	2.93574437314132	3.14035819159968	3.57903929391261	2.65533146819678	3.06523018695898	3.15613546214452	0.109478830655836	0.862823254389808	0.998431161219273
Merged-chr15-83369102-2	chr15	83369002	83369202	+	744.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1805.0	NR_027980	69291.0	Mm.66794	NM_001033147		1700001L05Rik	-	RIKEN cDNA 1700001L05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-100520972-4	chr12	100520863	100521063	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033213)	promoter-TSS (NM_001033213)	-141.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31471583-2	chr14	31471483	31471683	+	890.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23175.0	NM_001359850	67011.0	Mm.291731	NM_025907	ENSMUSG00000021891	Mettl6	1600013P15Rik|AI467521|AU020711	methyltransferase like 6	protein-coding	1.02863459963939	0.596880261860976	0.583249666747549	1.70113407437516	1.03957400295705	0.599912139732229	0.58628198902791	1.71278308576963	0.0314882487419853	0.984575447775888	0.998431161219273
Merged-chr6-66958679-4	chr6	66958582	66958782	+	993.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177560, intron 3 of 4)	intron (NM_001177560, intron 3 of 4)	61791.0	NM_001177558	14701.0	Mm.234342	NM_025278	ENSMUSG00000036402	Gng12	2010305F15Rik|AA536815|AI115529|AI314170|AI842738	guanine nucleotide binding protein (G protein), gamma 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-103500424-2	chr15	103500324	103500524	+	711.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2610.0	NM_008800	18574.0	Mm.390792	NM_008800	ENSMUSG00000022489	Pde1b	Pde1b1	phosphodiesterase 1B, Ca2+-calmodulin dependent	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64900778-2	chr5	64900678	64900878	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31921.0	NM_030682	21897.0	Mm.273024	NM_030682	ENSMUSG00000044827	Tlr1	-	toll-like receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120042627-4	chr11	120042491	120042691	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001198787)	promoter-TSS (NM_001198787)	-810.0	NM_001198787	11302.0	Mm.6826	NM_007377	ENSMUSG00000025375	Aatk	AATYK|aatyk1|mKIAA0641	apoptosis-associated tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91655261-2	chr2	91655161	91655361	+	654.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359970, intron 4 of 13)	intron (NM_001359970, intron 4 of 13)	2053.0	NM_146124	228359.0	Mm.22413	NM_146124	ENSMUSG00000027247	Arhgap1	B230365D05Rik|C76222|Cdc42GAP|p50rhoGAP	Rho GTPase activating protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-88587562-4	chr1	88587463	88587663	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36046.0	NR_037971	100503197.0	Mm.99352	NR_037971	ENSMUSG00000100798	Gm19589	-	predicted gene, 19589	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52036532-4	chr13	52036449	52036649	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60192.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99393378-4	chr15	99393292	99393492	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001171035, intron 1 of 9)	CpG	173.0	NM_001171035	110213.0	Mm.16769	NM_026669	ENSMUSG00000023010	Tmbim6	5031406P05Rik|Bi1|Tegt	transmembrane BAX inhibitor motif containing 6	protein-coding	4.57165486032969	5.20529250253193	4.52822967125775	4.0061792612963	4.49146431764674	5.27109171954838	3.66770986148038	4.32686856537464	-0.105470100995663	0.811463311972121	0.998431161219273
Merged-chr17-26535487-4	chr17	26535417	26535617	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25995.0	NM_026170	67458.0	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	6.17689375278194	6.29660953172233	6.06948355193771	6.16899284104175	6.38574136109506	5.93489706945334	6.94991990661771	5.93598866665777	0.204938225462362	0.414360289551233	0.896442802092227
Merged-chr4-121017266-4	chr4	121017162	121017362	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133716)	promoter-TSS (NM_133716)	-15.0	NM_133716	69780.0	Mm.271819	NM_133716	ENSMUSG00000032870	Smap2	1810031K02Rik|AA408614|Smap1l	small ArfGAP 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70612014-4	chr8	70611880	70612080	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3666.0	NM_133772	76900.0	Mm.6667	NM_133772	ENSMUSG00000070003	Ssbp4	1210002E11Rik|AW743380|Sspb4	single stranded DNA binding protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-25696282-2	chr8	25696182	25696382	+	695.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081269, intron 15 of 22)	B2_Mm1t|SINE|B2	-23766.0	NR_121642	71910.0	Mm.385055	NM_028000	ENSMUSG00000031570	Plpp5	1810019D05Rik|2310022A04Rik|AW045471|Ppapdc1|Ppapdc1b	phospholipid phosphatase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71118202-4	chr17	71118099	71118299	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083934, intron 33 of 36)	intron (NM_001083934, intron 33 of 36)	-65333.0	NM_001357791	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-4333216-3	chr11	4333117	4333317	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	66421.0	NM_001039537	16878.0	Mm.4964	NM_008501	ENSMUSG00000034394	Lif	-	leukemia inhibitory factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-156110896-2	chr2	156110796	156110996	+	567.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029397, intron 1 of 2)	intron (NM_029397, intron 1 of 2)	1069.0	NM_170598	75710.0	Mm.27660	NM_029397	ENSMUSG00000089824	Rbm12	5730420G12Rik|9430070C08Rik|AI852903|SWAN|mKIAA0765	RNA binding motif protein 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-55017115-4	chr6	55017006	55017206	+	917.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20895.0	NM_180678	353172.0	Mm.250004	NM_180678	ENSMUSG00000029777	Gars	GENA202|Gena201|Nmf249|Sgrp23	glycyl-tRNA synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-49712807-4	chr11	49712692	49712892	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_212484)	promoter-TSS (NM_212484)	-70.0	NM_212484	104625.0	Mm.247113	NM_212484	ENSMUSG00000020362	Cnot6	CCR4	CCR4-NOT transcription complex, subunit 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-19111363-3	chr19	19111275	19111475	+	832.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001043354)	promoter-TSS (NM_001043354)	-179.0	NM_001043354	225998.0	Mm.234641	NM_146095	ENSMUSG00000036192	Rorb	Nr1f2|RZR-beta|RZRB|Rorbeta|hstp	RAR-related orphan receptor beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-103363382-2	chr9	103363300	103363500	+	554.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175833, intron 2 of 4)	intron (NM_175833, intron 2 of 4)	1579.0	NM_001134427	321022.0	Mm.261025	NM_175565	ENSMUSG00000032803	Cdv3	2510010F10Rik|C230084J24Rik|C79446|TPP36	carnitine deficiency-associated gene expressed in ventricle 3	protein-coding	-1.50408632163699	-1.47243681084455	-1.48200788414105	-1.18867649397355	-1.50186458449932	-1.47036271933452	-1.47984120293868	-1.33786588344523	-0.709784890658749	0.839804335673694	1
Merged-chr5-115194262-3	chr5	115194166	115194366	+	701.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001310712, exon 1 of 6)	5' UTR (NM_001310712, exon 1 of 6)	115.0	NM_001310712	29867.0	Mm.38551	NM_013879	ENSMUSG00000029544	Cabp1	caldendrin	calcium binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-35337661-4	chr2	35337550	35337750	+	962.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013515)	promoter-TSS (NM_013515)	-641.0	NM_013515	13830.0	Mm.295284	NM_013515	ENSMUSG00000026880	Stom	Epb7.2	stomatin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-16013906-4	chr4	16013805	16014005	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145950)	promoter-TSS (NM_145950)	-17.0	NM_145950	209212.0	Mm.46455	NM_145950	ENSMUSG00000041153	Osgin2	BC010311|C230027H09Rik	oxidative stress induced growth inhibitor family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-99005424-2	chr13	99005324	99005524	+	714.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-20859.0	NM_027064	69382.0	Mm.45466	NM_027064	ENSMUSG00000045022	1700024P04Rik	H2bl1|Subh2bv	RIKEN cDNA 1700024P04 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-68086407-2	chr10	68086307	68086507	+	561.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	106837.0	NM_001359319	170799.0	Mm.209844	NM_133244	ENSMUSG00000037846	Rtkn2	B130039D23Rik|Mbf|Plekhk1	rhotekin 2	protein-coding	0.824096720919253	2.72237601922241	2.05568274693922	0.869971383065383	0.831155852461889	2.74480918535807	2.07520440784766	0.874595549904747	0.0402122086722576	0.987317582144903	0.998431161219273
Merged-chr11-96075102-2	chr11	96075002	96075202	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007506, intron 1 of 4)	intron (NM_007506, intron 1 of 4)	529.0	NM_001161419	11951.0	Mm.258	NM_007506	ENSMUSG00000006057	Atp5g1	-	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C1 (subunit 9)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-48121327-3	chr14	48121229	48121429	+	881.2666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033602, intron 1 of 5)	CpG	460.0	NM_033602	93834.0	Mm.296457	NM_033602	ENSMUSG00000021846	Peli2	AW047589|BB129927	pellino 2	protein-coding	1.39958089492818	1.23804718973444	0.551222397782229	0.54314104848345	1.34125072414477	0.964273752355314	0.553520611627455	0.54455762205768	-0.431574696273587	0.8006194455531	0.998431161219273
Merged-chr3-61340306-4	chr3	61340192	61340392	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24215.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-143814125-4	chr1	143814012	143814212	+	918.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	36834.0	NM_019562	56207.0	Mm.261004	NM_019562	ENSMUSG00000018189	Uchl5	5830413B11Rik|Uch37	ubiquitin carboxyl-terminal esterase L5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-57492260-4	chr10	57492158	57492358	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008297, intron 1 of 11)	RLTR20D|LTR|ERVK	5873.0	NM_008297	15500.0	Mm.261395	NM_008297	ENSMUSG00000019878	Hsf2	AI661205	heat shock factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-127021177-4	chr4	127021048	127021248	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045010)	promoter-TSS (NR_045010)	-153.0	NR_045010	71514.0	Mm.257276	NM_023603	ENSMUSG00000028820	Sfpq	1110004P21Rik|2810416M14Rik|5730453G22Rik|9030402K04Rik|AU021830|D4Ertd314e|Gm12940|PSF|REP1	splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-25045013-2	chr19	25044939	25045139	+	634.5	f0_balb.idr|f1_balb.idr	intron (NM_028785, intron 1 of 47)	intron (NM_028785, intron 1 of 47)	45510.0	NM_028785	76088.0	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	1.47083064175727	2.91860811563286	1.3838777089834	1.34550772420029	2.23011380627663	2.03380076168156	1.12302083025836	2.67839941814255	0.314370105328225	0.773249325277886	0.998431161219273
Merged-chr3-116163752-1	chr3	116163652	116163852	+	796.0	f0_balb.idr	Intergenic	Intergenic	-34064.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-111011059-3	chr10	111010957	111011157	+	750.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172554)	promoter-TSS (NM_172554)	-991.0	NM_172554	320150.0	Mm.339281	NM_172554	ENSMUSG00000035798	Zdhhc17	A230053P19Rik|BB187739|D130071N24Rik|DHHC-17|Hip14	zinc finger, DHHC domain containing 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-36830668-4	chr5	36830547	36830747	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008550)	promoter-TSS (NM_008550)	2.0	NM_008550	17160.0	Mm.761	NM_008550	ENSMUSG00000029119	Man2b2	mKIAA0935	mannosidase 2, alpha B2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3784201-2	chr4	3784101	3784301	+	859.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 12 of 12)	intron (NM_001111096, intron 12 of 12)	51454.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-148691544-2	chr5	148691435	148691635	+	569.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50305.0	NR_028285	70138.0	Mm.417834	NR_028285	ENSMUSG00000086494	2210417A02Rik	AV081004	RIKEN cDNA 2210417A02 gene	ncRNA	-2.18292257394068	-2.15545247547656	-2.03304972317742	-2.17058342868585	-2.18099422382073	-2.1536522739386	-2.16187909550322	-2.16936197735154	-0.683654500252594	0.846597994014493	1
Merged-chr12-76368356-2	chr12	76368256	76368456	+	717.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028356, intron 1 of 2)	intron (NM_028356, intron 1 of 2)	1108.0	NM_001172104	109929.0	Mm.41880	NM_028356	ENSMUSG00000056459	Zbtb25	2810462M08Rik|2900064P18Rik|AI842128|Kup|Zfp-50|Zfp50	zinc finger and BTB domain containing 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-108818656-2	chr8	108818556	108818756	+	572.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007496, intron 3 of 9)	intron (NM_007496, intron 3 of 9)	104012.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-68400094-2	chr11	68399994	68400194	+	716.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-13268.0	NM_008744	18208.0	Mm.39095	NM_008744	ENSMUSG00000020902	Ntn1	AI561871|BC019633|Netrin-1	netrin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-99986924-3	chr10	99986817	99987017	+	782.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28904.0	NM_001347156	17311.0	Mm.45124	NM_013598	ENSMUSG00000019966	Kitl	Clo|Con|Gb|Kitlg|Mgf|SCF|SF|SLF|Sl|blz|contrasted	kit ligand	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101352640-3	chr7	101352533	101352733	+	936.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040111, intron 1 of 33)	intron (NM_001040111, intron 1 of 33)	4564.0	NM_001040111	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-32787569-4	chr19	32787457	32787657	+	972.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008960, intron 2 of 8)	MTC|LTR|ERVL-MaLR	29980.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	2.84559408974548	1.63366144105854	1.58656512942141	2.29936821395063	2.29790362650368	2.20582629348954	1.8043577182139	2.82421987782339	0.270250405157565	0.771212770198159	0.998431161219273
Merged-chr7-120883918-7	chr7	120883814	120884014	+	896.238098	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001267710, intron 6 of 17)	B1_Mus2|SINE|Alu	32725.0	NM_001267711	13631.0	Mm.25997	NM_007908	ENSMUSG00000035064	Eef2k	C86191|eEF-2K	eukaryotic elongation factor-2 kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-142497438-4	chr3	142497347	142497547	+	847.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153564, intron 1 of 10)	intron (NM_153564, intron 1 of 10)	513.0	NM_153564	229898.0	Mm.459245	NM_153564	ENSMUSG00000105504	Gbp5	5330409J06Rik|Gbp5a	guanylate binding protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127294127-2	chr10	127294027	127294227	+	658.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007837, intron 2 of 3)	intron (NM_007837, intron 2 of 3)	3334.0	NM_001290183	13198.0	Mm.110220	NM_007837	ENSMUSG00000025408	Ddit3	CHOP-10|CHOP10|chop|gadd153	DNA-damage inducible transcript 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-92475511-3	chr16	92475419	92475619	+	851.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-3223.0	NM_029740	76785.0	Mm.444318	NM_029740		2410124H12Rik	-	RIKEN cDNA 2410124H12 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141294872-3	chr7	141294774	141294974	+	718.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007878, exon 4 of 4)	3' UTR (NM_007878, exon 4 of 4)	2868.0	NM_007878	13491.0	Mm.41075	NM_007878	ENSMUSG00000025496	Drd4	AW125663|D4R|Drd-4	dopamine receptor D4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-114255789-2	chr6	114255689	114255889	+	753.125	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26846.0	NM_178703	232333.0	Mm.5260	NM_178703	ENSMUSG00000030310	Slc6a1	A730043E01|GABATHG|GABATR|GAT-1|Gabt|Gabt1|Gat1|XT-1|Xtrp1	solute carrier family 6 (neurotransmitter transporter, GABA), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-18616304-3	chr8	18616190	18616390	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173189, intron 3 of 13)	intron (NM_173189, intron 3 of 13)	21159.0	NM_173189	244329.0	Mm.235296	NM_173189	ENSMUSG00000039842	Mcph1	5430437K10Rik|BRIT1|D030046N04Rik|MCT|Tg(HLA-A2.1)1Enge	microcephaly, primary autosomal recessive 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-120568837-2	chr5	120568737	120568937	+	603.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145853, intron 2 of 27)	intron (NM_145853, intron 2 of 27)	19776.0	NM_145853	252972.0	Mm.114054	NM_145853	ENSMUSG00000032741	Tpcn1	5730403B01Rik|Tpc1|mKIAA1169	two pore channel 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-95180597-3	chr4	95180496	95180696	+	897.194458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-128374.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-59447403-2	chr5	59447303	59447503	+	576.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR41C|LTR|ERV1	538599.0	NR_040683	71057.0	Mm.50817	NR_040682	ENSMUSG00000106013	4933402J10Rik	-	RIKEN cDNA 4933402J10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19233595-2	chr7	19233495	19233695	+	622.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_207525, intron 1 of 1)	intron (NM_207525, intron 1 of 1)	5206.0	NM_207525	403187.0	Mm.239583	NM_207525	ENSMUSG00000052214	Opa3	D630048P19Rik|Gm1425|Gm472	optic atrophy 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-122870283-2	chr4	122870219	122870419	+	665.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007598, intron 3 of 12)	intron (NM_007598, intron 3 of 12)	15757.0	NM_001358035	12331.0	Mm.8687	NM_007598	ENSMUSG00000028656	Cap1	-	CAP, adenylate cyclase-associated protein 1 (yeast)	protein-coding	2.06053003872454	1.21538323801189	1.60707409541559	1.71978072511301	2.16166435183828	1.98678832126876	1.61832894974107	2.42975530028243	1.10780374263943	0.281503855544683	0.784196698058662
Merged-chr16-76111278-2	chr16	76111178	76111378	+	593.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE-int|LTR|ERVL-MaLR	-11335.0	NR_040575	78215.0	Mm.243885	NR_040575		4930578N18Rik	-	RIKEN cDNA 4930578N18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-53329436-4	chr19	53329340	53329540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360345)	promoter-TSS (NM_001360345)	27.0	NM_001360345	17859.0	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43763667-2	chr4	43763567	43763767	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7342.0	NM_019476	29849.0	Mm.88845	NM_019476	ENSMUSG00000044801	Olfr159	MOR262-5|Olfr37e|mOR37e	olfactory receptor 159	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-158925654-2	chr3	158925554	158925754	+	652.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-150710.0	NR_040750	624759.0	Mm.491054	NR_040750	ENSMUSG00000106053	Gm20752	-	predicted gene, 20752	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-71144848-4	chr11	71144754	71144954	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001004142)	promoter-TSS (NM_001004142)	-150.0	NM_001004142	195046.0	Mm.240227	NM_001004142	ENSMUSG00000069830	Nlrp1a	CARD7|DEFCAP|Gm14|Gm15|NAC|Nalp1|Nalp1a|Nlrp1|PP1044	NLR family, pyrin domain containing 1A	protein-coding	5.07318801580081	4.51244904586225	4.96474620516493	4.70847742458806	5.16579951815193	6.09591127439386	6.22830086536543	5.27505888579643	1.0678401391991	0.00142638688632507	0.0260087991825656
Merged-chr5-124860198-2	chr5	124860096	124860296	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144819, intron 1 of 3)	L3|LINE|CR1	2025.0	NM_144819	215707.0	Mm.389693	NM_144819	ENSMUSG00000037979	Ccdc92	AW050178|D5Bwg0834e	coiled-coil domain containing 92	protein-coding	-0.459169537158215	-0.445531432185466	0.344153163585249	-0.453433158292052	-0.458314932114159	-0.444528622766728	-0.449003505411347	-0.000667380686336094	-1.10183730184683	0.684100399718754	1
Merged-chr13-6029894-1	chr13	6029794	6029994	+	629.0	f0_balb.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	168405.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-91967163-1	chr1	91967063	91967263	+	583.0	f1_c57bl6.idr	intron (NM_207225, intron 16 of 26)	intron (NM_207225, intron 16 of 26)	165702.0	NM_007855	13345.0	Mm.9474	NM_007855	ENSMUSG00000007805	Twist2	Dermo1|bHLHa39	twist basic helix-loop-helix transcription factor 2	protein-coding	0.190218142051395	0.226811777879671	0.215130296521681	1.52221733600971	0.39139837229674	0.229406870572809	0.21773101678901	1.30866195849919	-0.286893694837285	0.930602546221604	0.998431161219273
Merged-chr10-94829583-4	chr10	94829491	94829691	+	824.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018797, intron 20 of 30)	intron (NM_018797, intron 20 of 30)	114987.0	NM_018797	54712.0	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124898519-4	chr6	124898441	124898641	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10341.0	NM_013488	12504.0	Mm.2209	NM_013488	ENSMUSG00000023274	Cd4	L3T4|Ly-4	CD4 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127171086-4	chr10	127170959	127171159	+	941.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008080, exon 10 of 11)	exon (NM_008080, exon 10 of 11)	5228.0	NM_001358578	14421.0	Mm.386762	NM_008080	ENSMUSG00000006731	B4galnt1	4933429D13Rik|Gal-NAc-T|GalNAc-T|GalNAcT|Galgt1|Ggm-2|Ggm2	beta-1,4-N-acetyl-galactosaminyl transferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-36145257-4	chr17	36145170	36145370	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033517, intron 1 of 3)	CpG	252.0	NR_033517	675325.0	Mm.75890	NR_033517	ENSMUSG00000038311	2410017I17Rik	-	RIKEN cDNA 2410017I17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-11712918-4	chr2	11712811	11713011	+	902.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271499, intron 1 of 6)	intron (NM_001271499, intron 1 of 6)	7199.0	NM_001271500	16169.0	Mm.200196	NM_008358	ENSMUSG00000023206	Il15ra	AA690181|IL-15RA	interleukin 15 receptor, alpha chain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-110616452-3	chr7	110616345	110616545	+	868.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	-1525.0	NM_177324	319934.0	Mm.102970	NM_177324	ENSMUSG00000038371	Sbf2	4833411B01Rik|AA414977|AI317167|B430219L04Rik|Mtmr13|mMTMH1	SET binding factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-77268254-2	chr10	77268154	77268354	+	747.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_030262, intron 8 of 8)	intron (NM_030262, intron 8 of 8)	8954.0	NM_030262	80294.0	Mm.203556	NM_030262	ENSMUSG00000020260	Pofut2	2310011G23Rik|AI256847|BC003494|C21orf80|FUT13	protein O-fucosyltransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-104571616-4	chr5	104571481	104571681	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346671)	promoter-TSS (NM_001346671)	-91.0	NM_001346672	69623.0	Mm.69919	NM_027142		Zfp33b	2310012P17Rik	zinc finger protein 33B	protein-coding	5.49274861233793	5.57211053146909	6.18107712624836	5.36503332028943	4.62737828603169	3.05794387429891	4.90313868713607	3.7589853703196	-1.671495173634	2.84303708475612e-05	0.0010909624395385
Merged-chr5-114356723-2	chr5	114356601	114356801	+	691.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164573, intron 21 of 30)	intron (NM_001164573, intron 21 of 30)	23804.0	NM_001159941	330171.0	Mm.238285	NM_026145	ENSMUSG00000001098	Kctd10	AW536343|C87062|mBACURD3	potassium channel tetramerisation domain containing 10	protein-coding	-1.50811478453619	-0.99851579554048	-1.48484165847197	-1.49312904261012	-1.50577282675516	-1.47256636097272	-1.48255773576353	-1.49164560481169	-2.24133836997777	0.518237887813808	1
Merged-chr4-109550777-1	chr4	109550677	109550877	+	796.5	f0_balb.idr	Intergenic	Intergenic	-19480.0	NM_026291	67646.0	Mm.45820	NM_026291	ENSMUSG00000060491	4930522H14Rik	1700007J23Rik	RIKEN cDNA 4930522H14 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-104998668-2	chr3	104998568	104998768	+	721.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F1|SINE|Alu	-36959.0	NM_009520	22414.0	Mm.10740	NM_009520	ENSMUSG00000027840	Wnt2b	Wnt13	wingless-type MMTV integration site family, member 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-30612471-6	chr13	30612341	30612541	+	918.7777710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2602.0	NR_045975	75090.0	Mm.292232	NR_045975	ENSMUSG00000086263	4930519D14Rik	-	RIKEN cDNA 4930519D14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-142393922-3	chr7	142393840	142394040	+	828.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6070.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-89539447-6	chr13	89539377	89539577	+	876.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1159.0	NM_013500	12950.0	Mm.266790	NM_013500	ENSMUSG00000021613	Hapln1	BB099155|CLP|Crtl1|Crtl1l|LP|LP-1	hyaluronan and proteoglycan link protein 1	protein-coding	0.524147762382636	0.521170052610133	0.16741222046585	0.162900542568664	0.156530423199142	0.666310168444089	0.736611265268318	0.163688482317156	0.72892548419928	0.716702617882961	1
Merged-chr6-97303271-2	chr6	97303171	97303371	+	958.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 18 of 23)	intron (NM_145148, intron 18 of 23)	-50491.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83444103-3	chr6	83444025	83444225	+	749.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028382, intron 2 of 2)	intron (NR_028382, intron 2 of 2)	2370.0	NR_028382	320775.0	Mm.434334	NR_028382	ENSMUSG00000051844	B230319C09Rik	-	RIKEN cDNA B230319C09 gene	ncRNA	1.29756296822365	0.677382907339062	0.873911602795538	1.15405566427583	0.817424757156643	1.81057929079206	0.667535733508111	1.16114365624492	0.723687182137093	0.6162418248164	0.977352076822579
Merged-chr3-69655210-4	chr3	69655104	69655304	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MMERGLN-int|LTR|ERV1	-56244.0	NM_020026	26879.0	Mm.153710	NM_020026	ENSMUSG00000043300	B3galnt1	B3galt3|b3GT3	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-79374591-4	chr8	79374499	79374699	+	995.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008539, intron 1 of 6)	intron (NM_008539, intron 1 of 6)	24869.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-121372197-3	chr9	121372097	121372297	+	687.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357973, intron 1 of 5)	intron (NM_001357973, intron 1 of 5)	5239.0	NM_175114	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36571031-2	chr1	36570931	36571131	+	841.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001126046, intron 12 of 14)	intron (NM_001126046, intron 12 of 14)	-12650.0	NM_001126047	20353.0	Mm.29558	NM_001126047	ENSMUSG00000026121	Sema4c	AI426163|M-Sema F|Semacl1|Semaf|Semai|sema I	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80103673-3	chr7	80103596	80103796	+	694.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173011, intron 1 of 10)	intron (NM_173011, intron 1 of 10)	11654.0	NM_173011	269951.0	Mm.246432	NM_173011	ENSMUSG00000030541	Idh2	E430004F23|IDPm|Idh-2	isocitrate dehydrogenase 2 (NADP+), mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-31755208-4	chr16	31755104	31755304	+	778.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252436, intron 1 of 22)	intron (NM_001252436, intron 1 of 22)	854.0	NM_001252436	13383.0	Mm.382	NM_007862	ENSMUSG00000022770	Dlg1	B130052P05Rik|Dlgh1|E-dlg/SAP97|SAP-97|SAP97|mKIAA4187	discs large MAGUK scaffold protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30845543-2	chr2	30845428	30845628	+	885.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_009116, exon 1 of 4)	exon (NM_009116, exon 1 of 4)	161.0	NM_009116	20204.0	Mm.1802	NM_009116	ENSMUSG00000039476	Prrx2	Prx2|S8	paired related homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-106668377-4	chr14	106668276	106668476	+	919.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6A|LTR|ERVK	-181856.0	NR_045938	73631.0	Mm.48862	NR_045938	ENSMUSG00000099794	1700128A07Rik	-	RIKEN cDNA 1700128A07 gene	ncRNA	2.48478707768093	3.82843021172835	3.50622222408858	2.87559869412877	2.84990772387456	3.85481938313268	2.98535462294846	2.89092681289466	-0.0965468713462802	0.882104407151552	0.998431161219273
Merged-chr18-61013625-1	chr18	61013525	61013725	+	571.0	f1_balb.idr	intron (NM_201353, intron 1 of 13)	intron (NM_201353, intron 1 of 13)	574.0	NM_201353	240332.0	Mm.39846	NM_201353	ENSMUSG00000052026	Slc6a7	AW455934|PROT	solute carrier family 6 (neurotransmitter transporter, L-proline), member 7	protein-coding	-1.43172712806865	-1.3992492906874	-1.40907085678131	-1.41713858359971	-0.932192548427885	-1.39712091634321	-1.40684746950024	-1.41569446435649	2.19283191591698	0.528233640655333	1
Merged-chr10-39410342-2	chr10	39410242	39410442	+	796.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001122892, intron 2 of 12)	RMER1B|Other|Other	40543.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-58484874-4	chr13	58484774	58484974	+	811.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-81531.0	NM_001301341	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-130101552-2	chr4	130101452	130101652	+	610.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6004.0	NM_026441	67898.0	Mm.20818	NM_026441	ENSMUSG00000028779	Pef1	2600002E23Rik|Peflin	penta-EF hand domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28371119-2	chr7	28371019	28371219	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001083912, exon 2 of 19)	exon (NM_001083912, exon 2 of 19)	1543.0	NM_138752	101497.0	Mm.235700	NM_138752	ENSMUSG00000037552	Plekhg2	AI194308|Clg|Cslg	pleckstrin homology domain containing, family G (with RhoGef domain) member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-41868600-2	chr10	41868500	41868700	+	589.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162908, intron 1 of 9)	Lx9|LINE|L1	-18839.0	NM_001013370	140742.0	Mm.139418	NM_001013370	ENSMUSG00000038332	Sesn1	1110002G11Rik|AU044290|Pa26|Sest1	sestrin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81692210-2	chr15	81692110	81692310	+	629.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001164320, exon 5 of 6)	exon (NM_001164320, exon 5 of 6)	5077.0	NM_001164320	214685.0	Mm.393287	NM_001164320	ENSMUSG00000063765	Chadl	AY100452|D930017K21Rik	chondroadherin-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67814129-2	chr10	67814029	67814229	+	827.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	98533.0	NM_178679	216049.0	Mm.268346	NM_178679	ENSMUSG00000037855	Zfp365	AI839779|AV340892|DBZ|Su48|Znf365|talanin	zinc finger protein 365	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-130501825-3	chr2	130501706	130501906	+	921.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355161, intron 1 of 21)	intron (NM_001355161, intron 1 of 21)	51528.0	NM_001355161	19262.0	Mm.224246	NM_008980	ENSMUSG00000027303	Ptpra	Ptpa|Ptpalpha|Rptpalpha|Rptra|Rptralpha	protein tyrosine phosphatase, receptor type, A	protein-coding	4.09876216404473	3.4621167479206	3.2420588074021	3.65849827389197	4.12931292389969	3.38219792867163	3.715708222712	3.44707151957624	0.0692849082654955	0.894186686557317	0.998431161219273
Merged-chr5-114799654-2	chr5	114799554	114799754	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026718, intron 11 of 14)	B1_Mur2|SINE|Alu	14322.0	NR_027818	66236.0	Mm.268546	NR_027817	ENSMUSG00000072694	1500011B03Rik	AI415201|AV141149|AW556386	RIKEN cDNA 1500011B03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-55498703-2	chr12	55498603	55498803	+	765.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6056.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-93803083-2	chr1	93802983	93803183	+	711.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025454)	promoter-TSS (NM_025454)	-882.0	NM_025454	66262.0	Mm.64065	NM_025454	ENSMUSG00000026283	Ing5	1700001C14Rik|1700027H23Rik|1810018M11Rik|AI225768	inhibitor of growth family, member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-84755131-2	chr10	84755031	84755231	+	684.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024918)	promoter-TSS (NM_001024918)	-917.0	NM_001024918	71137.0	Mm.79070	NM_027689	ENSMUSG00000020037	Rfx4	4933412G19Rik|NYD-sp10	regulatory factor X, 4 (influences HLA class II expression)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-99237347-4	chr5	99237222	99237422	+	981.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145839, intron 4 of 13)	intron (NM_145839, intron 4 of 13)	15605.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-25560598-2	chr2	25560498	25560698	+	687.8000490000001	f1_balb.idr|f1_c57bl6.idr	exon (NM_021519, exon 3 of 5)	exon (NM_021519, exon 3 of 5)	2698.0	NM_021519	59022.0	Mm.29945	NM_021519	ENSMUSG00000015092	Edf1	0610008L11Rik|AA409425	endothelial differentiation-related factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-120363556-3	chr10	120363446	120363646	+	743.805542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010441, exon 5 of 5)	3' UTR (NM_010441, exon 5 of 5)	-25977.0	NR_040626	320626.0	Mm.446091	NR_040626	ENSMUSG00000090191	9230105E05Rik	-	RIKEN cDNA 9230105E05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-16005617-3	chr3	16005520	16005720	+	877.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081687, intron 1 of 3)	Lx2|LINE|L1	712.0	NM_001081687	381484.0	Mm.217376	NM_001081687	ENSMUSG00000078780	Gm5150	-	predicted gene 5150	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85480801-4	chr12	85480684	85480884	+	820.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6894.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-61059191-2	chr19	61059092	61059292	+	629.333374	f0_c57.idr|f1_c57bl6.idr	intron (NR_131953, intron 3 of 6)	RLTR12B|LTR|ERVK	81648.0	NR_131956	414758.0	Mm.100056	NM_001001737	ENSMUSG00000074733	Zfp950	5830428H23Rik|AU016073|BC055757|Gm34518|Zfp826|mszf84	zinc finger protein 950	protein-coding	2.42250170566566	1.51719370511812	1.82784677138707	2.40737412492592	2.22466607890937	1.52603401099789	1.84134854984589	1.78818851364175	-0.62876387266992	0.52123505329792	0.947836760490745
Merged-chr7-132997797-1	chr7	132997697	132997897	+	733.0	f1_balb.idr	intron (NM_001170744, intron 3 of 8)	intron (NM_001170744, intron 3 of 8)	17450.0	NM_001170744	13017.0	Mm.246240	NM_009980	ENSMUSG00000030970	Ctbp2	AA407280|D7Ertd45e|Gtrgeo6|Ribeye	C-terminal binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47610973-3	chr17	47610886	47611086	+	938.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020048)	promoter-TSS (NM_020048)	506.0	NM_016859	53414.0	Mm.472101	NM_016859	ENSMUSG00000023988	Bysl	Bys|Enp1	bystin-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19300024-2	chr7	19299924	19300124	+	928.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8955.0	NM_001025364	20167.0	Mm.24142	NM_013648	ENSMUSG00000030401	Rtn2	MMS10-P|Ms10p|NSPLI|Nspl1	reticulon 2 (Z-band associated protein)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36729023-2	chr18	36728923	36729123	+	623.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2208.0	NM_009841	12475.0	Mm.3460	NM_009841	ENSMUSG00000051439	Cd14	-	CD14 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-166459093-4	chr1	166458993	166459193	+	967.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3605.0	NR_151518	102636226.0	Mm.412602	NR_151518		Gm33354	-	predicted gene, 33354	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91088033-4	chr2	91087933	91088133	+	789.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8645.0	NM_011355	20375.0	Mm.1302	NM_011355	ENSMUSG00000002111	Spi1	Dis-1|Dis1|PU.1|Sfpi-1|Sfpi1|Spi-1|Tcfpu1|Tfpu.1	spleen focus forming virus (SFFV) proviral integration oncogene	protein-coding	-0.91086064057667	-0.537920390516943	-0.904607194507997	-0.906958879780987	-0.910280420471427	-0.388080308842497	-0.903934751527494	-0.906548113875136	0.723305748842633	0.814917440146965	1
Merged-chr1-167231297-3	chr1	167231202	167231402	+	814.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030724, intron 4 of 6)	MIRc|SINE|MIR	53825.0	NM_030724	80914.0	Mm.280895	NM_030724	ENSMUSG00000026558	Uck2	AA407809|AI481316|AU018180|AU020720|TSA903|UK|UMK|Umpk	uridine-cytidine kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-58497997-4	chr10	58497924	58498124	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162956)	promoter-TSS (NM_001162956)	87.0	NM_001162956	76138.0	Mm.211744	NM_001162956	ENSMUSG00000038010	Ccdc138	6230424H07Rik|BC042726	coiled-coil domain containing 138	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78864651-1	chr15	78864551	78864751	+	720.333313	f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-9122.0	NM_025622	107753.0	Mm.390793	NM_025622	ENSMUSG00000043501	Lgals2	2200008F12Rik|AI324147	lectin, galactose-binding, soluble 2	protein-coding	1.65431509649044	0.866614181508841	0.847378127220347	2.02825833372131	1.84754487494414	0.870871559121815	0.851671345831	2.04050293909851	0.196095677853796	0.892617145228992	0.998431161219273
Merged-chr2-70989859-2	chr2	70989759	70989959	+	806.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145524, intron 3 of 9)	intron (NM_145524, intron 3 of 9)	28515.0	NM_001110512	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-38065640-6	chr6	38065397	38065597	+	757.597229	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080467, intron 14 of 20)	intron (NM_080467, intron 14 of 20)	-18501.0	NM_177200	320590.0	Mm.197449	NM_177200	ENSMUSG00000029830	Svopl	9430071P14Rik	SV2 related protein homolog (rat)-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-32169063-3	chr14	32168963	32169163	+	925.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019744, intron 1 of 9)	intron (NM_019744, intron 1 of 9)	3274.0	NM_019744	27057.0	Mm.371598	NM_019744	ENSMUSG00000056234	Ncoa4	ARA70|Rfg	nuclear receptor coactivator 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35078046-4	chr17	35077931	35078131	+	951.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027366, intron 2 of 2)	intron (NM_027366, intron 2 of 2)	1089.0	NM_027366	70274.0	Mm.250491	NM_027366	ENSMUSG00000013766	Ly6g6e	2310011I02Rik|G6e	lymphocyte antigen 6 complex, locus G6E	protein-coding	1.07395533308705	0.819040435871069	1.18401281168782	1.03632076012935	1.08446339697062	0.824404767468762	0.621490534683339	0.779753234482232	-1.03303445041839	0.476170831056251	1
Merged-chr12-3812813-4	chr12	3812714	3812914	+	942.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271753, intron 1 of 22)	intron (NM_001271753, intron 1 of 22)	5654.0	NM_001271753	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-89688516-2	chr4	89688384	89688584	+	558.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_175647, exon 1 of 2)	exon (NM_175647, exon 1 of 2)	286.0	NM_175647	242523.0	Mm.130167	NM_175647	ENSMUSG00000043753	Dmrta1	Dmrt4	doublesex and mab-3 related transcription factor like family A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-67962043-4	chr7	67961969	67962169	+	949.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010513, intron 1 of 20)	intron (NM_010513, intron 1 of 20)	9812.0	NM_010513	16001.0	Mm.275742	NM_010513	ENSMUSG00000005533	Igf1r	A330103N21Rik|CD221|D930020L01|IGF-1R|hyft	insulin-like growth factor I receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-33171952-3	chr14	33171821	33172021	+	662.266663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146022, intron 1 of 58)	intron (NM_001146022, intron 1 of 58)	13145.0	NM_001146022	545030.0	Mm.318345	NM_001146022	ENSMUSG00000051506	Wdfy4	Gm18810	WD repeat and FYVE domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-25825903-1	chr15	25825803	25826003	+	670.0	f0_balb.idr	Intergenic	Intergenic	-17395.0	NM_001034851	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-36024297-3	chr17	36024219	36024419	+	836.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015618, intron 1 of 1)	intron (NR_015618, intron 1 of 1)	-3759.0	NM_008207	15042.0	Mm.439654	NM_008207	ENSMUSG00000053835	H2-T24	H-2T24	histocompatibility 2, T region locus 24	protein-coding	-1.18843546917626	-0.672880934833519	-1.0000600259471	-1.18308460022907	-1.18795000374374	-1.1605532696126	-1.17150120785794	-1.18145913969456	-2.61982285023827	0.417764462822768	1
Merged-chr8-71294853-1	chr8	71294753	71294953	+	575.0	f1_balb.idr	intron (NM_001142322, intron 2 of 39)	intron (NM_001142322, intron 2 of 39)	22139.0	NM_001142323	17925.0	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	-0.306659791927688	-0.294547970668552	-0.129428568610578	-0.30159442773171	-0.166798059380165	-0.293647999119483	0.0204567788910238	0.309787629475987	2.71572306968969	0.241371887772162	1
Merged-chr4-41311326-4	chr4	41311223	41311423	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026893, intron 2 of 8)	intron (NM_026893, intron 2 of 8)	3578.0	NM_026893	68970.0	Mm.28891	NM_026893	ENSMUSG00000028436	Dcaf12	1500001L20Rik|5830424K06Rik|AA420338|AI851081|Wdr40a	DDB1 and CUL4 associated factor 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-63817749-4	chr4	63817659	63817859	+	944.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	43525.0	NM_009403	21949.0	Mm.4664	NM_009403	ENSMUSG00000028362	Tnfsf8	CD153|CD30LG|Cd30l|Tnlg3a	tumor necrosis factor (ligand) superfamily, member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83616669-4	chr6	83616579	83616779	+	921.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	39437.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	3.88538425942531	4.21236683668687	4.4981629700865	3.69363176381599	4.07235206680346	3.24236332112015	4.43675719573402	4.16040381824137	-0.0711359734180454	0.879240442654965	0.998431161219273
Merged-chr15-58743680-2	chr15	58743580	58743780	+	905.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	79747.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90744598-3	chr2	90744544	90744744	+	848.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018828)	promoter-TSS (NM_018828)	-726.0	NM_018828	55935.0	Mm.489638	NM_018828	ENSMUSG00000008200	Fnbp4	FBP30|Fnbp30|mKIAA1014	formin binding protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-76093647-1	chr14	76093547	76093747	+	542.0	f1_balb.idr	intron (NM_026177, intron 7 of 7)	B2_Mm2|SINE|B2	17168.0	NM_026177	67467.0	Mm.260767	NM_026177	ENSMUSG00000022008	Gpalpp1	1200011I18Rik|Kiaa1704	GPALPP motifs containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-97182752-4	chr15	97182674	97182874	+	980.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15530.0	NR_155279	102635594.0	Mm.392594	NR_155278	ENSMUSG00000116295	Gm32885	-	predicted gene, 32885	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-36317242-2	chr12	36317172	36317372	+	804.5	f0_balb.idr|f1_balb.idr	exon (NM_025312, exon 2 of 2)	exon (NM_025312, exon 2 of 2)	3103.0	NM_025312	66042.0	Mm.43375	NM_025312	ENSMUSG00000036169	Sostdc1	0610006G05Rik|Sostl|USAG-1|Wise|ectodin	sclerostin domain containing 1	protein-coding	1.41255908670098	1.36885391411604	1.08424208861401	1.78665904754661	2.26467075296463	1.3778477272228	2.54478427729282	2.13288592017837	2.07756407790548	0.0570237233059492	0.353272271372519
Merged-chr5-34518109-4	chr5	34518007	34518207	+	921.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4128.0	NM_139064	231130.0	Mm.28615	NM_139064	ENSMUSG00000059866	Tnip2	1810020H16Rik|ABIN-2|AI428870	TNFAIP3 interacting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-66828548-2	chr9	66828448	66828648	+	683.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026674, intron 3 of 5)	B3A|SINE|B2	6158.0	NM_026674	68318.0	Mm.284229	NM_026674	ENSMUSG00000053040	Aph1c	0610008A10Rik|APH-1b|Aph1b	aph1 homolog C, gamma secretase subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-51585989-3	chr15	51585950	51586150	+	684.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-190440.0	NR_045092	100502643.0	Mm.131987	NR_045092	ENSMUSG00000115654	Gm19303	-	predicted gene, 19303	ncRNA	-1.56355737717652	-1.81244775989375	-1.82128546162293	-1.82854501295842	-1.83962066705452	-1.81053259306168	-1.81928479966835	-1.82724555674025	-1.28500227969968	0.715751224811686	1
Merged-chr3-22076723-4	chr3	22076615	22076815	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030732)	promoter-TSS (NM_030732)	63.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-5017811-2	chr7	5017711	5017911	+	765.833313	f1_balb.idr|f1_c57bl6.idr	exon (NM_025324, exon 2 of 2)	exon (NM_025324, exon 2 of 2)	2303.0	NM_025324	66056.0	Mm.19974	NM_025324	ENSMUSG00000051184	Zfp524	0610012F07Rik|2300009P13Rik|Znf524	zinc finger protein 524	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-143151278-2	chr7	143151178	143151378	+	636.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_008434, intron 2 of 15)	intron (NM_008434, intron 2 of 15)	44024.0	NM_008434	16535.0	Mm.439769	NM_008434	ENSMUSG00000009545	Kcnq1	AW559127|KVLQT1|Kcna9	potassium voltage-gated channel, subfamily Q, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52239802-2	chr13	52239702	52239902	+	833.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	143061.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-148877595-4	chr2	148877478	148877678	+	889.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2066.0	NM_009976	13010.0	Mm.4263	NM_009976	ENSMUSG00000027447	Cst3	CysC	cystatin C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-59004516-1	chr4	59004416	59004616	+	803.0	f1_balb.idr	intron (NM_001033165, intron 1 of 3)	intron (NM_001033165, intron 1 of 3)	1323.0	NM_001033165	72429.0	Mm.317801	NM_001033165	ENSMUSG00000070972	Dnajc25	2010109C08Rik|2010203O07Rik	DnaJ heat shock protein family (Hsp40) member C25	protein-coding	-2.18308165884198	-2.15547475440471	-2.16382331017202	-2.1706810624505	-2.18114370519566	-2.15366558754311	-2.03057248461154	-2.16945352807143	0.759018020146679	0.829933115115583	1
Merged-chr3-36613419-4	chr3	36613308	36613508	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027810)	promoter-TSS (NM_027810)	-19.0	NM_027810	71492.0	Mm.286187	NM_027810	ENSMUSG00000037325	Bbs7	8430406N16Rik	Bardet-Biedl syndrome 7 (human)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-88242076-3	chr8	88242003	88242203	+	800.888855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164499, intron 2 of 11)	intron (NM_001164499, intron 2 of 11)	-30300.0	NM_007406	11513.0	Mm.288206	NM_007406	ENSMUSG00000031659	Adcy7	AA407758	adenylate cyclase 7	protein-coding	2.37833193937333	0.50945046566637	0.491471975859814	1.08780448400971	0.67956069636874	0.79382317892257	0.495494236070418	1.09605514918559	-2.10226094569447	0.167373125510613	0.633485087165721
Merged-chr13-19828272-4	chr13	19828163	19828363	+	990.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4006.0	NM_181754	353346.0	Mm.239268	NM_181754	ENSMUSG00000053101	Gpr141	PGR13	G protein-coupled receptor 141	protein-coding	1.42274481865365	1.4846581647408	0.749063542122684	2.48548157408441	0.700464926140729	0.778799322781626	2.3240047470009	0.732943372747217	-0.820814608720948	0.733263185220333	0.998431161219273
Merged-chr13-111788411-4	chr13	111788374	111788574	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011945, intron 1 of 19)	intron (NM_011945, intron 1 of 19)	20519.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135544159-2	chr5	135544059	135544259	+	628.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_146001, intron 1 of 30)	intron (NM_146001, intron 1 of 30)	963.0	NM_146001	215114.0	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-55954345-3	chr16	55954244	55954444	+	687.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTRIS_Mus|LTR|ERV1	-11931.0	NM_024218	68193.0	Mm.29221	NM_024218	ENSMUSG00000098274	Rpl24	0610008L05Rik|Bst	ribosomal protein L24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-136749392-2	chr1	136749292	136749492	+	760.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53181.0	NR_037986	100503474.0	Mm.428276	NR_037986		Platr22	Gm16880	pluripotency associated transcript 22	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53225768-2	chr4	53225668	53225868	+	838.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20428.0	NR_040665	78180.0	Mm.243847	NR_040665	ENSMUSG00000086947	4930522O17Rik	-	RIKEN cDNA 4930522O17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-26035723-4	chr16	26035602	26035802	+	933.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173379, intron 1 of 14)	intron (NM_173379, intron 1 of 14)	70082.0	NM_173379	210530.0	Mm.326869	NM_173379	ENSMUSG00000038168	P3h2	4832416N06|AW553532|Leprel1|Mlat4	prolyl 3-hydroxylase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-9379365-3	chr11	9379272	9379472	+	879.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178259, intron 31 of 61)	intron (NM_178259, intron 31 of 61)	187430.0	NM_178259	268379.0	Mm.39270	NM_178259	ENSMUSG00000004668	Abca13	9830132L24|A930002G16Rik|AI956815	ATP-binding cassette, sub-family A (ABC1), member 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-45843610-4	chr19	45843525	45843725	+	999.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198296, intron 24 of 25)	intron (NM_198296, intron 24 of 25)	-27562.0	NM_145703	80906.0	Mm.213204	NM_030716	ENSMUSG00000025221	Kcnip2	KChIP2	Kv channel-interacting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-35047968-4	chr12	35047838	35048038	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001014973, intron 1 of 25)	intron (NM_001014973, intron 1 of 25)	749.0	NM_001014973	217463.0	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-65677963-1	chr11	65677863	65678063	+	726.0	f1_balb.idr	Intergenic	Intergenic	56869.0	NR_030417	791070.0		NR_030417	ENSMUSG00000076460	Mir744	Mirn744|mir-744|mmu-mir-744	microRNA 744	ncRNA	0.13120932083142	-0.146630935509757	-0.15275429627436	-0.157509732286704	-0.164277958600306	0.847431496500999	-0.151399889961342	0.183911070468788	2.5050713724298	0.275882135176294	1
Merged-chr10-80399693-4	chr10	80399590	80399790	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001306143)	promoter-TSS (NM_001306143)	-159.0	NM_001306143	17192.0	Mm.7142	NM_013595	ENSMUSG00000035478	Mbd3	AI181826|AU019209	methyl-CpG binding domain protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97408072-4	chr6	97407909	97408109	+	944.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 5 of 23)	ORR1A4-int|LTR|ERVL-MaLR	51277.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116079575-2	chr11	116079475	116079675	+	676.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001347642, exon 7 of 7)	exon (NM_001347642, exon 7 of 7)	-1614.0	NM_001009573	70450.0	Mm.259460	NM_001009573	ENSMUSG00000057948	Unc13d	2610108D09Rik|Jinx|Munc13-4|mFLJ00067	unc-13 homolog D (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-34860411-3	chr1	34860313	34860513	+	961.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357425, intron 2 of 8)	MLTR14|LTR|ERV1	10424.0	NM_001357425	226971.0	Mm.292751	NM_145516	ENSMUSG00000026123	Plekhb2	2310009M15Rik|AU018239|Evt2|Phdc|evt-2	pleckstrin homology domain containing, family B (evectins) member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-77821103-1	chr9	77821003	77821203	+	639.0	f0_balb.idr	Intergenic	ORR1C2-int|LTR|ERVL-MaLR	66568.0	NM_010295	14629.0	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	0.109730175151828	0.994208466408014	0.608713831144773	0.118706484373295	0.111070264705499	0.516458912429725	0.125609295028136	0.298937877066287	-1.62152543260593	0.420843982534822	1
Merged-chr8-115583520-3	chr8	115583459	115583659	+	821.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	123335.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115634980-2	chr5	115634880	115635080	+	553.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198163, intron 1 of 5)	intron (NM_198163, intron 1 of 5)	2993.0	NM_198163	77407.0	Mm.27553	NM_198163	ENSMUSG00000029518	Rab35	9530019H02Rik|AU040256|H-ray|RAB1C|RAY	RAB35, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-29431099-3	chr13	29431014	29431214	+	860.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131896, intron 13 of 16)	intron (NR_131896, intron 13 of 16)	414859.0	NR_045075	77920.0	Mm.197051	NR_045073	ENSMUSG00000086363	A330102I10Rik	-	RIKEN cDNA A330102I10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-99964561-4	chr12	99964469	99964669	+	978.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146037)	promoter-TSS (NM_146037)	70.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-11163644-1	chr8	11163544	11163744	+	680.0	f0_balb.idr	Intergenic	Intergenic	-149161.0	NM_009932	12827.0	Mm.181021	NM_009932	ENSMUSG00000031503	Col4a2	Col4a-2	collagen, type IV, alpha 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-66815589-1	chr15	66815489	66815689	+	541.0	f0_balb.idr	intron (NM_009192, intron 1 of 8)	intron (NM_009192, intron 1 of 8)	16240.0	NM_001029841	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	1.24922093281709	2.3789408141098	1.36086187780227	1.48271356025088	0.867508072915152	2.22470851773512	1.54431197943435	0.896896684668743	-0.524335927948483	0.675706213245361	0.99440487726309
Merged-chr17-56581157-2	chr17	56581057	56581257	+	604.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001029979, intron 2 of 20)	B4A|SINE|B4	3428.0	NM_001029979	224902.0	Mm.214973	NM_001029979	ENSMUSG00000042625	Safb2	AA389433|AI255170|mKIAA0138	scaffold attachment factor B2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-182554185-3	chr1	182554084	182554284	+	870.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10823.0	NM_001145806	170725.0	Mm.189201	NM_130890	ENSMUSG00000038599	Capn8	nCL-2|nCL-2'	calpain 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-39620493-4	chr8	39620446	39620646	+	967.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113326, intron 4 of 9)	RMER6A|LTR|ERVK	22132.0	NM_031195	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	2.16487312023265	1.99530347556571	2.16049931699217	1.74451604429152	1.67531820700362	1.24844932189997	1.80473474256177	2.294678241252	-0.574235053522881	0.570047254596559	0.962718661854691
Merged-chr14-34497598-2	chr14	34497498	34497698	+	660.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_009758, intron 1 of 12)	intron (NM_009758, intron 1 of 12)	4948.0	NM_009758	12166.0	Mm.237825	NM_009758	ENSMUSG00000021796	Bmpr1a	1110037I22Rik|ALK-3|ALK3|AU045487|BMPR-1A|BMPR-IA|Bmpr|SKR5	bone morphogenetic protein receptor, type 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-86987079-3	chr3	86986960	86987160	+	792.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007640, exon 2 of 7)	exon (NM_007640, exon 2 of 7)	474.0	NR_038188	12480.0	Mm.389465	NM_007640	ENSMUSG00000041750	Cd1d2	CD1.2|Cd1b|Ly-38	CD1d2 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-40940760-2	chr6	40940660	40940860	+	687.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361930)	promoter-TSS (NM_001361930)	-203.0	NM_028550	73481.0	Mm.333010	NM_028550	ENSMUSG00000029883	1700074P13Rik	AV047902|Tryx5	RIKEN cDNA 1700074P13 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-145746823-3	chr2	145746737	145746937	+	759.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033220, intron 3 of 3)	intron (NR_033220, intron 3 of 3)	-39279.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-90116935-2	chr9	90116835	90117035	+	755.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-2115.0	NM_024431	21761.0	Mm.426209	NM_024431	ENSMUSG00000062270	Morf4l1	MORFRG15|MRG15|TEG-189|Tex189|mKIAA4002	mortality factor 4 like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-155912094-1	chr1	155911994	155912194	+	794.0	f0_balb.idr	intron (NM_001039184, intron 17 of 37)	intron (NM_001039184, intron 17 of 37)	61161.0	NM_001039184	74081.0	Mm.260247	NM_001039184	ENSMUSG00000033671	Cep350	4933409L06Rik|6430546F08Rik	centrosomal protein 350	protein-coding	2.75378598248617	2.99892407596816	1.50658919191764	2.45914253587443	3.49463150139868	3.7265878560722	2.23574753294177	2.82569295191356	1.16873812115012	0.134109945700592	0.571666672850202
Merged-chr14-103155900-1	chr14	103155800	103156000	+	855.0	f0_balb.idr	exon (NM_207215, exon 58 of 85)	exon (NM_207215, exon 58 of 85)	-56334.0	NM_001360342	50789.0	Mm.214746	NM_015822	ENSMUSG00000022124	Fbxl3	AU041772|AW212966|FBK|Fbl3a|Fbxl3a|Ovtm|Play68	F-box and leucine-rich repeat protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-12324552-2	chr15	12324452	12324652	+	554.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025673, intron 1 of 3)	RMER10A|LTR|ERVL	3056.0	NM_025673	66629.0	Mm.157655	NM_025673	ENSMUSG00000022200	Golph3	4733401N08Rik|5730410D03Rik|AW413496	golgi phosphoprotein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-92278165-4	chr5	92277996	92278196	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163687)	promoter-TSS (NM_001163687)	85.0	NM_001163687	67111.0	Mm.28890	NM_025972	ENSMUSG00000029413	Naaa	2210023K21Rik|3830414F09Rik|Asahl	N-acylethanolamine acid amidase	protein-coding	5.18818001940837	6.36360703363303	5.85330414707209	4.94745765242688	5.78922122500865	5.27247013919443	5.75202058004493	5.15081518569381	-0.190647732166614	0.568571351573045	0.962718661854691
Merged-chr3-103859093-4	chr3	103858964	103859164	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_104070)	promoter-TSS (NR_104070)	-731.0	NR_104070	19260.0	Mm.395	NM_008979	ENSMUSG00000027843	Ptpn22	70zpep|PEP|Ptpn8	protein tyrosine phosphatase, non-receptor type 22 (lymphoid)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-153806997-2	chr1	153806897	153807097	+	746.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001243223, intron 11 of 20)	intron (NM_001243223, intron 11 of 20)	37144.0	NM_001243223	240816.0	Mm.329340	NM_001243223	ENSMUSG00000042641	Rgsl1	4930415K13Rik|Gm202|Rgsl2	regulator of G-protein signaling like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-133136080-3	chr1	133135979	133136179	+	901.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133819, intron 1 of 1)	MIR|SINE|MIR	4913.0	NM_133819	108954.0	Mm.293628	NM_133819	ENSMUSG00000046062	Ppp1r15b	1810033K10Rik|AI606441|C530022L24Rik|CReP	protein phosphatase 1, regulatory (inhibitor) subunit 15b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-116642121-4	chr3	116641992	116642192	+	991.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008246, intron 5 of 11)	intron (NM_008246, intron 5 of 11)	20585.0	NM_008246	15247.0	Mm.280077	NM_008246	ENSMUSG00000089911	Mfsd14a	Hiat1	major facilitator superfamily domain containing 14A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-17333980-4	chr19	17333870	17334070	+	938.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010265, intron 1 of 2)	intron (NM_010265, intron 1 of 2)	5535.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	4.34884009191909	4.1136406995431	3.68495477541436	4.59423887771365	2.36271950615066	4.14266600008222	4.07466929196475	3.89032576602451	-0.629904450137181	0.232676648997989	0.727877916220547
Merged-chr4-152325145-2	chr4	152325045	152325245	+	971.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_102292)	promoter-TSS (NR_102292)	-581.0	NM_001277114	19934.0	Mm.307846	NM_009079	ENSMUSG00000028936	Rpl22	2700038K18Rik	ribosomal protein L22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5422068-3	chr17	5422001	5422201	+	589.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027457, intron 3 of 3)	intron (NM_027457, intron 3 of 3)	-3334.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-27665802-4	chr15	27665702	27665902	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198301, intron 1 of 6)	intron (NM_198301, intron 1 of 6)	15740.0	NM_001242424	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-155122063-2	chr1	155121963	155122163	+	979.416626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22427.0	NM_010500	15939.0	Mm.12246	NM_010500	ENSMUSG00000056708	Ier5	-	immediate early response 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-117772834-2	chr12	117772698	117772898	+	615.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-71063.0	NM_146040	217946.0	Mm.281149	NM_146040	ENSMUSG00000021175	Cdca7l	BC006933|JPO2	cell division cycle associated 7 like	protein-coding	1.58906896965678	1.53997631447374	2.02219721924203	0.927469468924022	1.49818791465684	1.69270104526076	1.34441847345378	0.92977589942375	-0.636027577569871	0.613828962784622	0.977250439470701
Merged-chr11-64600502-3	chr11	64600434	64600634	+	816.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-163860.0	NR_028445	654805.0	Mm.436132	NR_028445		F930015N05Rik	-	RIKEN cDNA F930015N05 gene	ncRNA	1.69302742133494	1.72228751212989	2.87001884565545	1.1547986586736	2.19227202362082	2.47951302972552	1.18877360985228	2.66092990679152	0.445607416954595	0.680010614794393	0.995506882643648
Merged-chr4-133730375-3	chr4	133730278	133730478	+	813.688904	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080819, intron 1 of 19)	intron (NM_001080819, intron 1 of 19)	-13270.0	NR_106086	102465707.0		NR_106086	ENSMUSG00000104566	Mir7227	mmu-mir-7227	microRNA 7227	ncRNA	1.2315105161477	0.593267005627903	1.05474872305104	1.12956325030335	1.06878810683281	0.966924524068183	0.586298961182496	0.578597792494475	-1.03876277652132	0.516178339481334	1
Merged-chr15-100187424-2	chr15	100187324	100187524	+	594.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172819, intron 18 of 32)	intron (NM_172819, intron 18 of 32)	612.0	NR_037311	100499528.0		NR_037311	ENSMUSG00000092752	Mir3473a	Mir3473|mir-3473a|mmu-mir-3473|mmu-mir-3473a	microRNA 3473a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-59848219-4	chr11	59848111	59848311	+	945.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_134029, exon 1 of 5)	exon (NM_134029, exon 1 of 5)	138.0	NM_134029	103850.0	Mm.41761	NM_134029	ENSMUSG00000032615	Nt5m	2010013E09Rik|AI846937|dNT-2	5',3'-nucleotidase, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-61029423-4	chr9	61029317	61029517	+	997.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12348.0	NR_040767	330956.0	Mm.207985	NR_040767	ENSMUSG00000111290	Gm5122	A430102L10	predicted gene 5122	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-95772026-2	chr15	95771926	95772126	+	666.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18817.0	NM_175344	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-108935151-2	chr7	108935051	108935251	+	766.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025344, intron 1 of 7)	intron (NM_025344, intron 1 of 7)	736.0	NM_025344	66085.0	Mm.182962	NM_025344	ENSMUSG00000031029	Eif3f	0610037M02Rik|AA409853|Eif3s5	eukaryotic translation initiation factor 3, subunit F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-9084162-3	chr4	9084064	9084264	+	993.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-185129.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-166001732-7	chr1	166001515	166001715	+	931.161926	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198932, intron 1 of 15)	CpG	1019.0	NM_011137	18986.0	Mm.245261	NM_011137	ENSMUSG00000026565	Pou2f1	2810482H01Rik|NF-A1|Oct-1|Oct1|Otf-1|Otf1	POU domain, class 2, transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46897509-2	chr8	46897409	46897609	+	666.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15-int|LTR|ERVL	-89378.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-164670464-1	chr2	164670364	164670564	+	698.0	f0_balb.idr	intron (NM_001161806, intron 1 of 4)	intron (NM_001161806, intron 1 of 4)	3623.0	NM_001161806	629761.0	Mm.389336	NM_001161806	ENSMUSG00000078940	Wfdc11	-	WAP four-disulfide core domain 11	protein-coding	-0.00226784495212884	-0.159836321821366	-0.17924872184945	-0.34739302301059	-0.351361160232243	0.131302317609226	-0.343762260143243	-0.346900866892132	-0.391772511197887	0.869045370016295	1
Merged-chr6-5167512-4	chr6	5167387	5167587	+	995.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011134)	TTS (NM_011134)	26459.0	NM_011134	18979.0	Mm.237657	NM_011134	ENSMUSG00000002588	Pon1	Pon	paraoxonase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-91702007-4	chr10	91701904	91702104	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-186825.0	NR_152729	102633867.0	Mm.351514	NR_152729	ENSMUSG00000111657	Gm31592	-	predicted gene, 31592	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-38580937-3	chr5	38580796	38580996	+	784.833313	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19301.0	NM_011715	22388.0	Mm.2654	NM_011715	ENSMUSG00000005103	Wdr1	Aip1|D5Wsu185e|rede	WD repeat domain 1	protein-coding	0.604944200098331	0.327496730715868	0.318484249402101	1.11069286786191	1.32571100293484	0.551337926047602	0.320480893174218	0.312690801014815	0.370635421035539	0.841275072570969	1
Merged-chr5-140754519-2	chr5	140754419	140754619	+	756.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30392.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-81020052-7	chr5	81019982	81020182	+	931.371399	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347367)	promoter-TSS (NM_001347367)	-489.0	NM_001347367	319387.0	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-108615983-4	chr8	108615872	108616072	+	913.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB8|LINE|L1	-31295.0	NR_077224	109215.0	Mm.65282	NR_077224	ENSMUSG00000110613	Lncbate1	3010033K07Rik|Lnc-BATE1	brown adipose tissue enriched long non-coding RNA 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-79622859-3	chr11	79622737	79622937	+	905.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175543, intron 3 of 14)	intron (NM_175543, intron 3 of 14)	326.0	NR_003283	790912.0	Mm.447313	NR_003283	ENSMUSG00000087434	Rab11fip4os1	Gm11202	RAB11 family interacting protein 4 (class II), opposite strand 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-29618757-2	chr2	29618657	29618857	+	720.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039087)	promoter-TSS (NM_001039087)	-963.0	NM_054050	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-4339022-3	chr10	4338927	4339127	+	621.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031185, intron 2 of 3)	intron (NM_031185, intron 2 of 3)	48448.0	NM_001359811	381990.0	Mm.262466	NM_001033466	ENSMUSG00000075327	Zbtb2	Gm1103	zinc finger and BTB domain containing 2	protein-coding	-2.18292257394068	-2.15545247547656	-2.03304972317742	-2.17058342868585	-2.18099422382073	-2.1536522739386	-2.16187909550322	-2.16936197735154	-0.683654500252594	0.846597994014493	1
Merged-chr17-33978904-4	chr17	33978806	33979006	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_004446)	promoter-TSS (NR_004446)	-115.0	NR_004446	630499.0	Mm.440940	NM_001081015		H2-K2	EG630499|Gm7035|H-2K1|H-2K1K|H-2K2|H2-K1	histocompatibility 2, K region locus 2	pseudo	8.11190883151188	8.15924416731211	8.39995165572731	8.18949746810228	8.00039633862202	8.15804890306476	8.21977205445691	8.12575740448665	-0.0948809777179281	0.438851099516492	0.909130714404946
Merged-chr15-8705104-4	chr15	8705000	8705200	+	969.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_148938, intron 2 of 9)	intron (NM_148938, intron 2 of 9)	5707.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-29529548-1	chr6	29529448	29529648	+	1000.0	f0_c57.idr	intron (NM_001252382, intron 1 of 8)	intron (NM_001252382, intron 1 of 8)	266.0	NM_001252382	27056.0	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-4749343-4	chr6	4749244	4749444	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040611, intron 1 of 1)	intron (NM_001040611, intron 1 of 1)	2038.0	NM_130877	170676.0	Mm.320575	NM_130877	ENSMUSG00000092035	Peg10	AA407948|Edr|HB-1|MEF3L|Mar2|Mart2|MyEF-3|Rtl2	paternally expressed 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-63567430-2	chr13	63567330	63567530	+	889.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001328514, intron 1 of 23)	intron (NM_001328514, intron 1 of 23)	-1695.0	NM_008957	19206.0	Mm.228798	NM_008957	ENSMUSG00000021466	Ptch1	A230106A15Rik|Ptc|Ptc1|Ptch|mes|wig	patched 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-68282790-4	chr7	68282682	68282882	+	855.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013811, intron 1 of 8)	intron (NM_001013811, intron 1 of 8)	-6188.0	NR_040340	100504026.0	Mm.426764	NR_040340	ENSMUSG00000086628	Gm16157	-	predicted gene 16157	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153144592-2	chr2	153144492	153144692	+	850.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001172117, intron 11 of 12)	intron (NM_001172117, intron 11 of 12)	-16709.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-48234708-4	chr17	48234574	48234774	+	995.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347399, intron 1 of 2)	intron (NM_001347399, intron 1 of 2)	1935.0	NM_021406	58217.0	Mm.248352	NM_021406	ENSMUSG00000042265	Trem1	-	triggering receptor expressed on myeloid cells 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-90458483-2	chr3	90458384	90458584	+	670.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008727, intron 11 of 21)	intron (NM_008727, intron 11 of 21)	7382.0	NM_008727	18160.0	Mm.4627	NM_008727	ENSMUSG00000027931	Npr1	AI893888|GC-A|NPR-A|NPRA|Pndr	natriuretic peptide receptor 1	protein-coding	0.0678587083678842	-0.0665557138354026	0.724363648658178	-0.0769260383969011	0.601584444637161	-0.0652415021606402	-0.0711091520776722	-0.076134325291414	-0.496278520482323	0.82694546038405	1
Merged-chr16-4682968-2	chr16	4682868	4683068	+	742.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-1102.0	NM_023646	83945.0	Mm.248337	NM_023646	ENSMUSG00000004069	Dnaja3	1200003J13Rik|1810053A11Rik|C81173|Tid-1|Tid1l	DnaJ heat shock protein family (Hsp40) member A3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-78143994-3	chr10	78143886	78144086	+	784.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25782.0	NM_138601	28295.0	Mm.268691	NM_138601	ENSMUSG00000053329	D10Jhu81e	C21orf33|ES1	DNA segment, Chr 10, Johns Hopkins University 81 expressed	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117961018-2	chr11	117960918	117961118	+	723.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8348.0	NM_007707	12702.0	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-74686195-2	chr7	74686100	74686300	+	733.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-131420.0	NM_001038643	108116.0	Mm.425467	NM_023908	ENSMUSG00000025790	Slco3a1	5830414C08Rik|Anr1|MJAM|OATP-D|R75096|Slc21a11	solute carrier organic anion transporter family, member 3a1	protein-coding	1.87102256916575	1.00707241497041	0.98651378211694	1.88612356708208	1.69571869848197	1.01162290587183	1.72695234022595	2.31164022437659	0.738180074149308	0.562946266330404	0.960362415684079
Merged-chr6-72038913-5	chr6	72038800	72039000	+	801.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_046180, intron 1 of 2)	RLTR13C2|LTR|ERVK	3628.0	NR_046180	330350.0	Mm.246787	NR_046180	ENSMUSG00000108356	9130221F21Rik	9130221F21	RIKEN cDNA 9130221F21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124438528-4	chr5	124438487	124438687	+	846.3660890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1343.0	NM_030241	67956.0	Mm.137966	NM_030241	ENSMUSG00000049327	Kmt5a	2410195B05Rik|AA617402|AW536475|PR-SET7|PR/SET07|Setd8	lysine methyltransferase 5A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-10468876-4	chr10	10468771	10468971	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127353, intron 1 of 36)	intron (NM_001127353, intron 1 of 36)	3443.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	5.01062334311862	4.92668068660165	5.27907125279264	4.73697495490008	4.54835373623238	4.1314075583011	5.08595423488106	4.91298935615093	-0.341171850419262	0.331036371145608	0.83197671091297
Merged-chr3-145950192-1	chr3	145950092	145950292	+	550.0	f0_balb.idr	Intergenic	Intergenic	12178.0	NR_151446	66421.0	Mm.25137	NM_025555	ENSMUSG00000036873	2410004B18Rik	4930572C24Rik	RIKEN cDNA 2410004B18 gene	protein-coding	1.55946965913752	1.51127027356139	1.70168723267271	1.27710390013242	1.07817462262061	1.88925210764757	1.32100128312847	0.921749351730226	-0.556620893637524	0.649823584396163	0.985422869512088
Merged-chr13-102685498-2	chr13	102685398	102685598	+	692.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8049.0	NM_001360519	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95609413-4	chr3	95609255	95609455	+	947.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146133, intron 3 of 4)	intron (NM_146133, intron 3 of 4)	-15625.0	NM_019561	56205.0	Mm.241365	NM_019561	ENSMUSG00000038619	Ensa	1700020C18Rik|2610007F17Rik|AI451924	endosulfine alpha	protein-coding	0.474979710902714	-0.245387580668811	-0.250325820679578	-0.254142799996458	0.412367442372248	-0.244275796534574	-0.249235791526863	-0.253475531899914	-0.1755903833357	0.945674664106991	1
Merged-chr10-34418589-4	chr10	34418509	34418709	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347463)	promoter-TSS (NM_001347463)	-58.0	NM_001347463	319638.0	Mm.73467	NM_176968	ENSMUSG00000039480	Nt5dc1	6030401B09Rik|AW987726|Nt5c2l1	5'-nucleotidase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46672925-4	chr8	46672809	46673009	+	971.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55618.0	NM_009810	12367.0	Mm.34405	NM_009810	ENSMUSG00000031628	Casp3	A830040C14Rik|AC-3|CASP-3|CC3|CPP-32|CPP32|Caspase-3|Lice|SCA-1|Yama|mldy	caspase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-125147457-4	chr5	125147393	125147593	+	936.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011424, intron 1 of 46)	intron (NM_011424, intron 1 of 46)	31721.0	NM_001253905	20602.0	Mm.278646	NM_011424	ENSMUSG00000029478	Ncor2	N-CoR|SMRT|SMRTe	nuclear receptor co-repressor 2	protein-coding	0.391604232083977	-6.07961507528287e-05	-0.00378292609800163	0.448637730922722	-0.0105943104059655	0.00078435967129542	-0.00296580276044692	0.454461517084763	-0.849284332999703	0.712912407955833	1
Merged-chr2-120469403-3	chr2	120469308	120469508	+	671.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040608)	promoter-TSS (NR_040608)	-41.0	NR_040608	70933.0	Mm.444742	NR_040608		4931402G19Rik	-	RIKEN cDNA 4931402G19 gene	ncRNA	0.475614134874126	0.72155483671308	0.128753807560022	0.124629265257179	0.483936853005744	0.323128004619528	0.302023396851232	0.125349265468236	-0.562164422161865	0.770997265055837	1
Merged-chr17-15816549-2	chr17	15816449	15816649	+	783.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_178615, intron 2 of 2)	RSINE1|SINE|B4	10037.0	NM_178615	68799.0	Mm.293466	NM_178615	ENSMUSG00000048027	Rgmb	1110059F19Rik|DRAGON	repulsive guidance molecule family member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95523309-1	chr3	95523209	95523409	+	651.0	f1_balb.idr	Intergenic	MTD|LTR|ERVL-MaLR	-3477.0	NM_021281	13040.0	Mm.3619	NM_021281	ENSMUSG00000038642	Ctss	Cats	cathepsin S	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129550970-2	chr2	129550870	129551070	+	711.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14368.0	NM_177653	228592.0	Mm.452175	NM_177653	ENSMUSG00000043727	F830045P16Rik	Sirpb3	RIKEN cDNA F830045P16 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-129901425-4	chr3	129901306	129901506	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009811)	promoter-TSS (NM_009811)	-9.0	NM_009811	12368.0	Mm.281379	NM_009811	ENSMUSG00000027997	Casp6	CASP-6|Mch2	caspase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-143006510-2	chr7	143006410	143006610	+	700.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_020286, intron 1 of 7)	intron (NM_020286, intron 1 of 7)	851.0	NM_001128081	27027.0	Mm.28172	NM_020286	ENSMUSG00000000244	Tspan32	AW208513|Art-1|BB235973|D7Wsu37e|Phemx|Tssc6	tetraspanin 32	protein-coding	-0.953721354153451	-1.41025554057125	-1.42001056191158	-1.42802362688808	-1.44024889148474	-1.40814158675276	-1.41780223890411	-1.42658929208844	-2.11310844444413	0.543369238581748	1
Merged-chr5-23783146-3	chr5	23783023	23783223	+	770.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178403, intron 1 of 15)	intron (NM_178403, intron 1 of 15)	588.0	NM_001289780	78697.0	Mm.58660	NM_178403	ENSMUSG00000057541	Pus7	C330017I15Rik	pseudouridylate synthase 7	protein-coding	2.58957964866619	3.41257914686857	2.81014013517714	2.73076156140875	2.99780717086588	3.25871965610386	3.24327420516911	3.44455698652668	0.567000315339999	0.363289577730802	0.858855050154424
Merged-chr18-55409420-4	chr18	55409290	55409490	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-416799.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	5.72991850599119	5.98621725300141	5.75015699857536	5.75354722853312	5.85822808376206	6.23664318381002	5.96982054235777	5.58976202273217	0.134557076418006	0.581843445359696	0.966599221005409
Merged-chr10-66852107-4	chr10	66852020	66852220	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	68264.0	NR_138560	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-36719293-2	chr16	36719193	36719393	+	859.599976	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285791, intron 5 of 6)	intron (NM_001285791, intron 5 of 6)	25315.0	NM_001285791	106347.0	Mm.17807	NM_134109	ENSMUSG00000022900	Ildr1	AU041483|AU044638	immunoglobulin-like domain containing receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-29739624-4	chr2	29739518	29739718	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001039087, exon 26 of 26)	3' UTR (NM_001039087, exon 26 of 26)	-21910.0	NM_001177392	433416.0	Mm.330112	NM_001034887	ENSMUSG00000075425	Gm13547	-	predicted gene 13547	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-106511172-2	chr8	106511072	106511272	+	556.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037809, intron 1 of 15)	intron (NM_001037809, intron 1 of 15)	320.0	NM_001037809	12560.0	Mm.4658	NM_007665	ENSMUSG00000061048	Cdh3	AI385538|Cadp|Cdhp|P-cadherin|Pcad	cadherin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-36918975-4	chr19	36918881	36919081	+	988.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_028263, exon 2 of 2)	exon (NM_028263, exon 2 of 2)	618.0	NM_028263	72514.0	Mm.41674	NM_028263	ENSMUSG00000047632	Fgfbp3	2610306H15Rik|Fgf-bp3	fibroblast growth factor binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124374790-3	chr6	124374680	124374880	+	851.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10294.0	NR_131162	72268.0	Mm.420740	NR_131162		1700027F06Rik	-	RIKEN cDNA 1700027F06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89847807-4	chr3	89847697	89847897	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172530, intron 2 of 5)	MIR|SINE|MIR	16427.0	NM_172530	214547.0	Mm.225	NM_172530	ENSMUSG00000046280	She	9430022A14	src homology 2 domain-containing transforming protein E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-58103502-2	chr11	58103400	58103600	+	813.833374	f0_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356477)	promoter-TSS (NM_001356477)	-470.0	NM_026949	69125.0	Mm.28910	NM_026949	ENSMUSG00000020515	Cnot8	1500015I04Rik|1810022F04Rik|AA536816|AU015770|AU043059	CCR4-NOT transcription complex, subunit 8	protein-coding	2.29807080271906	1.43386522543416	2.81236514933175	2.42756489034633	2.31806577662478	2.47951648648275	3.50633821491658	2.02220054982927	0.772512931843463	0.376085448410903	0.869193503923336
Merged-chr1-167517894-4	chr1	167517868	167518068	+	928.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51188.0	NM_001013382	240899.0	Mm.159799	NM_001013382	ENSMUSG00000040485	Lrrc52	4930413P14Rik	leucine rich repeat containing 52	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114810409-2	chr11	114810309	114810509	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11485.0	NM_181749	217302.0	Mm.269127	NM_181749	ENSMUSG00000034677	Gpr142	PGR2	G protein-coupled receptor 142	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-34043304-4	chr19	34043217	34043417	+	709.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172837, intron 9 of 9)	MIRb|SINE|MIR	-24041.0	NM_027340	70166.0	Mm.75602	NM_027340	ENSMUSG00000024770	Lipn	2210418G03Rik|Lipl4	lipase, family member N	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-54644644-2	chr14	54644544	54644744	+	584.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019567, intron 9 of 12)	intron (NM_019567, intron 9 of 12)	-1534.0	NR_105913	102466771.0		NR_105913	ENSMUSG00000106169	Mir6948	mmu-mir-6948	microRNA 6948	ncRNA	-2.05752322593321	-2.15521190974092	-2.16307242109104	-2.16952927915413	-2.17938029103484	-2.15350850414045	-2.16129297361887	-2.16837350464794	-0.683654500252594	0.846597994014493	1
Merged-chr9-116101413-4	chr9	116101319	116101519	+	899.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029575, intron 5 of 6)	intron (NM_029575, intron 5 of 6)	73944.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-135598043-4	chr7	135597921	135598121	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316680, intron 1 of 20)	intron (NM_001316680, intron 1 of 20)	4540.0	NM_001316680	19267.0	Mm.945	NM_011212	ENSMUSG00000041836	Ptpre	PTPe|PTPepsilon|RPTPepsilon	protein tyrosine phosphatase, receptor type, E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-46450900-4	chr18	46450806	46451006	+	926.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14910.0	NR_045438	72076.0	Mm.82766	NM_028086		Mospd4	2010013H21Rik	motile sperm domain containing 4	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-87536767-2	chr8	87536667	87536867	+	695.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27140.0	NM_177901	330820.0	Mm.212913	NM_177901	ENSMUSG00000069971	4933402J07Rik	-	RIKEN cDNA 4933402J07 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129336819-2	chr4	129336719	129336919	+	721.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025970, intron 1 of 6)	B2_Mm1a|SINE|B2	793.0	NM_025970	67106.0	Mm.36575	NM_025970	ENSMUSG00000057572	Zbtb8os	2010001H09Rik|2310028N13Rik|AI851226|Arch|Archm	zinc finger and BTB domain containing 8 opposite strand	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-22360765-4	chr17	22360674	22360874	+	854.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347330)	promoter-TSS (NM_001347330)	626.0	NM_176962	319615.0	Mm.442162	NM_176962	ENSMUSG00000033972	Zfp944	6330416L07Rik	zinc finger protein 944	protein-coding	-2.05752322593321	-2.15521190974092	-2.16307242109104	-2.16952927915413	-2.17938029103484	-2.15350850414045	-2.16129297361887	-2.16837350464794	-0.683654500252594	0.846597994014493	1
Merged-chr5-43878641-2	chr5	43878535	43878735	+	649.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007646, intron 1 of 7)	intron (NM_007646, intron 1 of 7)	9826.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	-0.705102255032725	-0.952111685752871	-0.962615221777784	-0.437351596801677	-0.967644059894427	-0.94954428968602	-0.961277147858996	-0.964338302966076	-2.86336605559115	0.354266356515036	1
Merged-chr14-55592639-2	chr14	55592539	55592739	+	563.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_194346, intron 3 of 20)	intron (NM_194346, intron 3 of 20)	897.0	NM_194346	268749.0	Mm.23748	NM_194346	ENSMUSG00000047098	Rnf31	AL033293|BC031509|Flj10111|HOIP|Paul|mFLJ00217	ring finger protein 31	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-57665874-3	chr14	57665809	57666009	+	626.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020506)	promoter-TSS (NM_020506)	-953.0	NM_020506	57258.0	Mm.202747	NM_020506	ENSMUSG00000021952	Xpo4	B430309A01Rik|mKIAA1721	exportin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-5244214-4	chr15	5244136	5244336	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008965)	promoter-TSS (NM_008965)	-49.0	NM_008965	19219.0	Mm.18509	NM_008965	ENSMUSG00000039942	Ptger4	EP4|Ptgerep4	prostaglandin E receptor 4 (subtype EP4)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-105896203-2	chr3	105896103	105896303	+	793.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027025, intron 1 of 6)	intron (NM_027025, intron 1 of 6)	-8218.0	NM_009631	11542.0	Mm.235024	NM_009631	ENSMUSG00000000562	Adora3	A3AR|A3R|AA3R|ARA3|Gpcr2	adenosine A3 receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-123280768-5	chr8	123280676	123280876	+	954.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016925, intron 30 of 42)	L1MB7|LINE|L1	-26554.0	NM_028200	72325.0	Mm.276193	NM_028200	ENSMUSG00000001062	Vps9d1	1300018I17Rik|2410004N05Rik|5DOS1|Vsp9d1	VPS9 domain containing 1	protein-coding	2.39407471357943	1.87687823686428	1.07809121370143	1.62167508271837	1.55190017298522	2.14066558704324	1.08312443600293	1.88776514172343	-0.319915686635406	0.782629553375751	0.998431161219273
Merged-chr1-85698351-3	chr1	85698244	85698444	+	660.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013673, intron 14 of 19)	intron (NM_013673, intron 14 of 19)	38262.0	NM_177055	319997.0	Mm.116691	NM_177055	ENSMUSG00000052760	A630001G21Rik	-	RIKEN cDNA A630001G21 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-7842659-3	chr1	7842557	7842757	+	869.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	753737.0	NM_183028	319263.0	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	1.55546127535602	1.13225619130679	2.04819488305925	1.48429676525896	1.98912756352341	2.02544792961235	1.34529888141298	2.18203670233866	0.960149906923676	0.378685410898256	0.871397690824179
Merged-chr13-40921486-4	chr13	40921397	40921597	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133219, intron 1 of 2)	intron (NM_133219, intron 1 of 2)	3863.0	NM_133219	14538.0	Mm.314757	NM_008105	ENSMUSG00000021360	Gcnt2	5330430K10Rik|IGnT|IGnTA|IGnTB|IGnTC	glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-65630278-4	chr17	65630170	65630370	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9486.0	NM_153519	213272.0	Mm.255732	NM_153519	ENSMUSG00000050612	Txndc2	AU021712|Sptrx-1|Sptrx1|Trx4	thioredoxin domain containing 2 (spermatozoa)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64805355-2	chr5	64805255	64805455	+	644.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_008453, intron 1 of 5)	intron (NM_008453, intron 1 of 5)	1832.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-155416308-4	chr1	155416216	155416416	+	865.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011273, intron 1 of 14)	intron (NM_011273, intron 1 of 14)	1128.0	NM_011273	19775.0	Mm.266215	NM_011273	ENSMUSG00000026469	Xpr1	Rmc-1|Rmc1|Sxv|Syg1|XR	xenotropic and polytropic retrovirus receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-90060082-4	chr9	90059983	90060183	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001312649, intron 1 of 10)	B4A|SINE|B4	5816.0	NM_001312649	13036.0	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	3.84161194716561	3.01060326888576	3.49241756563751	2.94093614777147	4.17109011964167	4.19926737445914	4.06510104907636	5.16792121484778	1.51816509685201	0.00274379613164067	0.0424592424601351
Merged-chr4-148908311-2	chr4	148908211	148908411	+	579.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027195, intron 4 of 15)	intron (NM_027195, intron 4 of 15)	44011.0	NR_154553	108168987.0	Mm.393596	NR_154553		Gm13205	AA408865	predicted gene 13205	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-120076498-4	chr1	120076397	120076597	+	980.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	-2717.0	NM_019432	170706.0	Mm.24750	NM_019432	ENSMUSG00000050777	Tmem37	AI173373|AW540203|Pr|Pr1	transmembrane protein 37	protein-coding	2.08682879482241	1.9968116576229	1.19174931766608	2.2927233973506	2.34323902607176	1.2222256274666	2.1845738923521	1.74627007341343	-0.0158777160141399	0.988331523978944	0.998431161219273
Merged-chr2-156411498-3	chr2	156411401	156411601	+	988.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	-9408.0	NM_001291122	13821.0	Mm.20852	NM_013510	ENSMUSG00000027624	Epb41l1	4.1N|Epb4.1l1|NBL1|mKIAA0338	erythrocyte membrane protein band 4.1 like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-85083244-4	chr8	85083144	85083344	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010764)	promoter-TSS (NM_010764)	-25.0	NM_010764	17159.0	Mm.4219	NM_010764	ENSMUSG00000005142	Man2b1	AW107687|LAMAN	mannosidase 2, alpha B1	protein-coding	4.51936107857544	5.12857813076345	3.75205939634916	4.92440982149683	4.59236848525466	5.04651838208984	5.18219522028461	3.90573625555927	0.109517405845453	0.796179249196609	0.998431161219273
Merged-chr3-60601801-2	chr3	60601701	60601901	+	912.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253711, intron 2 of 7)	intron (NM_001253711, intron 2 of 7)	100622.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-133743068-2	chr7	133742968	133743168	+	566.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357685, intron 3 of 11)	intron (NM_001357685, intron 3 of 11)	17201.0	NM_001286030	101437.0	Mm.199223	NM_133941	ENSMUSG00000030986	Dhx32	3110079L04Rik|4732469F02Rik|AA408140|Ddx32|muDDX32	DEAH (Asp-Glu-Ala-His) box polypeptide 32	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26436105-2	chr17	26436005	26436205	+	813.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081656, intron 2 of 4)	intron (NM_001081656, intron 2 of 4)	21140.0	NM_001081656	240055.0	Mm.133211	NM_001081656	ENSMUSG00000034413	Neurl1b	C230078M08Rik|EG240055	neuralized E3 ubiquitin protein ligase 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116369843-2	chr11	116369743	116369943	+	739.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027258, intron 2 of 18)	BGLII_B|LTR|ERVK	-34489.0	NM_008240	15223.0	Mm.378938	NM_008240	ENSMUSG00000034227	Foxj1	FKHL-13|HFH-4|Hfh4	forkhead box J1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167743671-2	chr2	167743571	167743771	+	556.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52494.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-74732174-2	chr15	74732074	74732274	+	609.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_026671)	TTS (NM_026671)	2139.0	NM_026671	68311.0	Mm.306880	NM_026671	ENSMUSG00000022595	Lypd2	0610005K03Rik|Lypdc2|VLL	Ly6/Plaur domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128535994-4	chr10	128535881	128536081	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10122.0	NM_011843	23943.0	Mm.66056	NM_011843	ENSMUSG00000025366	Esyt1	Fam62a|Mbc2|vp115	extended synaptotagmin-like protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-121547445-2	chr5	121547315	121547515	+	666.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1523.0	NM_010765	17165.0	Mm.272206	NM_010765	ENSMUSG00000029454	Mapkapk5	MK5|PRAK	MAP kinase-activated protein kinase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-54868283-2	chr14	54868179	54868379	+	802.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Arthur1|DNA|hAT-Tip100	-4121.0	NM_001177705	239099.0	Mm.280994	NM_183174	ENSMUSG00000057156	Homez	mKIAA1443	homeodomain leucine zipper-encoding gene	protein-coding	1.41711629631069	1.89682543676961	2.51375869886759	0.914739054588666	1.27894090615395	1.91291343230882	0.937712317257486	1.34615116428791	-1.20179654498356	0.327525868923398	0.830091967753047
Merged-chr11-115155355-2	chr11	115155255	115155455	+	659.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_021411, intron 1 of 8)	intron (NM_021411, intron 1 of 8)	1177.0	NM_021411	58222.0	Mm.143789	NM_021411	ENSMUSG00000020732	Rab37	B230331O03Rik|B230354I04Rik	RAB37, member RAS oncogene family	protein-coding	0.586197430777156	0.626157847353543	0.613326250626091	1.53967316204237	0.588764296846523	1.21706909976468	1.29819628508823	1.5501026471596	1.13439738213335	0.488774924076591	0.933746049075178
Merged-chr13-34715574-4	chr13	34715465	34715665	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15-int|LTR|ERVL	-24077.0	NM_138746	108161.0	Mm.41991	NM_138746	ENSMUSG00000038246	Fam50b	D0H6S2654E|X5L|XAP-5-like	family with sequence similarity 50, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-95534406-1	chr13	95534306	95534506	+	685.0	f1_balb.idr	Intergenic	Intergenic	-9166.0	NM_007974	14063.0	Mm.1614	NM_007974	ENSMUSG00000021678	F2rl1	Gpcr11|PAR-2|Par2	coagulation factor II (thrombin) receptor-like 1	protein-coding	1.27709557010905	0.778036472144833	0.966166425957488	1.72363741154069	0.911117575537908	1.4695939019556	0.972543112281584	1.24299222330696	-0.328180518792747	0.807110956309553	0.998431161219273
Merged-chr5-88721694-4	chr5	88721578	88721778	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026735, intron 1 of 5)	C-rich|Low_complexity|Low_complexity	807.0	NM_026735	68473.0	Mm.35764	NM_026735	ENSMUSG00000006262	Mob1b	1110003E08Rik|AU015450|B230364F10|Mobkl1a	MOB kinase activator 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-85561370-2	chr2	85561270	85561470	+	622.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17845.0	NM_146437	258429.0	Mm.377497	NM_146437	ENSMUSG00000111179	Olfr996	MOR175-4	olfactory receptor 996	protein-coding	-0.36336306221421	-0.605500364346446	-0.608662430483599	-0.611091460904882	-0.357280686873891	-0.126607596537912	-0.607966340993357	-0.610667784438145	1.52979204842182	0.573223077254403	1
Merged-chr10-80386830-3	chr10	80386668	80386868	+	856.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_198615, exon 1 of 2)	exon (NM_198615, exon 1 of 2)	883.0	NM_198615	237400.0	Mm.268389	NM_198615	ENSMUSG00000048696	Mex3d	BC059858|Rkhd1	mex3 RNA binding family member D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-122291917-2	chr3	122291817	122292017	+	675.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC5a|LINE|L1	1786.0	NR_030439	791077.0		NR_030439	ENSMUSG00000076456	Mir760	Mirn760|mir-760|mmu-mir-760	microRNA 760	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34144919-1	chr17	34144819	34145019	+	680.0	f1_c57bl6.idr	promoter-TSS (NM_010388)	promoter-TSS (NM_010388)	-497.0	NM_010388	15000.0	Mm.195060	NM_010388	ENSMUSG00000037548	H2-DMb2	H-2Mb2|H2-Mb2	histocompatibility 2, class II, locus Mb2	protein-coding	0.973213387420472	0.843619530917428	0.521332400554745	0.33816371793767	0.904392368303224	0.352152195902223	0.526414901278997	0.339109785968139	-0.82024376680087	0.646571598963854	1
Merged-chr17-5589789-2	chr17	5589689	5589889	+	899.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	97189.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-62573612-2	chr2	62573512	62573712	+	810.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_007986, intron 1 of 25)	intron (NM_007986, intron 1 of 25)	409.0	NM_007986	14089.0	Mm.41816	NM_007986	ENSMUSG00000000392	Fap	SIMP	fibroblast activation protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-138492503-3	chr3	138492387	138492587	+	633.644409	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-3105.0	NM_175224	75624.0	Mm.26833	NM_175224	ENSMUSG00000005813	Metap1	1700029C17Rik|AW047992|mKIAA0094	methionyl aminopeptidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-22683814-4	chr16	22683710	22683910	+	974.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26579.0	NM_001346673	110197.0	Mm.194986	NM_138650	ENSMUSG00000022861	Dgkg	2900055E17Rik|90kDa|AI854428|Dagk3|E430001K23Rik|mKIAA4131	diacylglycerol kinase, gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-21696873-4	chr10	21696754	21696954	+	967.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6009.0	NR_045843	432436.0	Mm.244553	NM_001004162	ENSMUSG00000056716	Gm5420	EG432436	predicted gene 5420	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95973074-2	chr3	95972974	95973174	+	960.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12436.0	NR_045872	668224.0	Mm.357766	NR_045872		Gm9054	EG668224	predicted gene 9054	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101947341-4	chr7	101947231	101947431	+	922.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-13474.0	NM_001162974	69358.0	Mm.214841	NM_027053	ENSMUSG00000064307	Lrrc51	1700008D07Rik|Lrtomt	leucine rich repeat containing 51	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46304647-4	chr19	46304516	46304716	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177369)	promoter-TSS (NM_001177369)	-121.0	NM_001177369	18034.0	Mm.102365	NM_019408	ENSMUSG00000025225	Nfkb2	NF-kappaB2|lyt|p49|p49/p100|p50B|p52	nuclear factor of kappa light polypeptide gene enhancer in B cells 2, p49/p100	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-34949431-4	chr5	34949332	34949532	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173402)	promoter-TSS (NM_173402)	-16.0	NM_173402	71729.0	Mm.196208	NM_173402	ENSMUSG00000029101	Rgs12	1200016K18Rik|4632412M04Rik|AI481290|E130309H11	regulator of G-protein signaling 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-34494570-4	chr4	34494459	34494659	+	813.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56056.0	NM_001007589	433693.0	Mm.389532	NM_026019	ENSMUSG00000028291	Akirin2	2700059D21Rik|AA114675|AA522011|AU019887|Akirin-2	akirin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-32365624-2	chr4	32365524	32365724	+	723.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51811.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166675608-3	chr2	166675518	166675718	+	924.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	38214.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-93589633-4	chr10	93589502	93589702	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027246)	promoter-TSS (NM_027246)	56.0	NM_027246	69878.0	Mm.259642	NM_027246	ENSMUSG00000020018	Snrpf	2010013O18Rik|SMF|sm-F|snRNP-F	small nuclear ribonucleoprotein polypeptide F	protein-coding	6.69987259108366	5.69138571693023	6.70650874624548	5.68136553771649	6.95436317217056	6.67635672675695	6.84453514856644	6.44213069033748	0.484990614600761	0.0609670530180932	0.365497685931587
Merged-chr4-135292924-4	chr4	135292801	135293001	+	811.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20141.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-56675216-3	chr18	56675124	56675324	+	610.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32589.0	NM_010721	16906.0	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-56795335-1	chr1	56795235	56795435	+	632.0	f0_balb.idr	3' UTR (NM_139146, exon 11 of 11)	3' UTR (NM_139146, exon 11 of 11)	-157884.0	NM_027661	71066.0	Mm.152656	NM_027661	ENSMUSG00000045336	Hsfy2	4933413G11Rik|Hspy2l	heat shock transcription factor, Y-linked 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-122648834-2	chr10	122648734	122648934	+	755.25	f1_balb.idr|f1_c57bl6.idr	TTS (NR_105839)	TTS (NR_105839)	495.0	NR_105839	102465223.0		NR_105839	ENSMUSG00000098522	Mir6412	Gm27364|mmu-mir-6412	microRNA 6412	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-122611288-4	chr2	122611142	122611342	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025961)	promoter-TSS (NM_025961)	35.0	NM_025961	67092.0	Mm.29975	NM_025961	ENSMUSG00000027199	Gatm	1810003P21Rik|AI314789|AT	glycine amidinotransferase (L-arginine:glycine amidinotransferase)	protein-coding	5.53374139595505	5.46805921880529	5.01099406378715	5.41483999400846	6.24313784137641	4.98212402304565	6.33814122149414	6.40994516361048	0.816873582618012	0.00807174435204875	0.0934732723787708
Merged-chr8-46010554-2	chr8	46010454	46010654	+	724.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026278)	promoter-TSS (NM_026278)	-48.0	NM_026278	67620.0	Mm.383914	NM_026278	ENSMUSG00000031637	Lrp2bp	1700113N17Rik|2310006J04Rik|4930479L12Rik|MegBP	Lrp2 binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-139622768-4	chr4	139622678	139622878	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175438)	promoter-TSS (NM_175438)	-116.0	NM_175438	212647.0	Mm.273571	NM_175438	ENSMUSG00000028737	Aldh4a1	A930035F14Rik|Ahd-1|Ahd1|Aldh4|Aldh5a1|E330022C09|P5cd|P5cdh|P5cdhl|P5cdhs|Ssdh1	aldehyde dehydrogenase 4 family, member A1	protein-coding	6.5582099242417	5.64473323734707	6.19982035756536	6.18278459762858	6.19942284884001	6.45815642948056	6.29130741487315	6.08635838040422	0.0745044528876668	0.751887825519203	0.998431161219273
Merged-chr13-99338430-2	chr13	99338330	99338530	+	666.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026873, intron 3 of 9)	intron (NM_026873, intron 3 of 9)	6248.0	NM_026873	68927.0	Mm.276502	NM_026873	ENSMUSG00000021650	Ptcd2	1190005P08Rik	pentatricopeptide repeat domain 2	protein-coding	-2.18138529563533	-2.15523716995652	-2.1631445789866	-2.16963996020037	-2.05513010215571	-2.15352360143315	-2.16135451490766	-2.16847729006863	0.759018020146679	0.829933115115583	1
Merged-chr1-173423085-4	chr1	173422982	173423182	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013779, intron 1 of 8)	intron (NM_001013779, intron 1 of 8)	2478.0	NM_001013779	383619.0	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-88536448-2	chr15	88536348	88536548	+	868.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63854.0	NM_027306	70073.0	Mm.45306	NM_027306	ENSMUSG00000054117	Zdhhc25	1700030J15Rik	zinc finger, DHHC domain containing 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64202476-3	chr5	64202376	64202576	+	924.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019636, intron 2 of 19)	intron (NM_019636, intron 2 of 19)	-27881.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-118311333-4	chr1	118311255	118311455	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_153836)	promoter-TSS (NR_153836)	-9.0	NM_011650	22099.0	Mm.426637	NM_011650	ENSMUSG00000026374	Tsn	2610034C24Rik|AU040286|C3PO|TB-RBP	translin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-78171736-2	chr10	78171636	78171836	+	775.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_029546, exon 21 of 21)	3' UTR (NM_029546, exon 21 of 21)	-1968.0	NM_138601	28295.0	Mm.268691	NM_138601	ENSMUSG00000053329	D10Jhu81e	C21orf33|ES1	DNA segment, Chr 10, Johns Hopkins University 81 expressed	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-75707405-4	chr13	75707289	75707489	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138953)	promoter-TSS (NM_138953)	-95.0	NM_138953	192657.0	Mm.21288	NM_138953	ENSMUSG00000001542	Ell2	-	elongation factor RNA polymerase II 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-83158632-4	chr8	83158524	83158724	+	675.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-6728.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	4.87254540557591	4.44107816320185	3.47871568175848	4.23955417697217	4.53628353768637	4.81475740759595	3.39951459905993	3.82527761171923	-0.126242702229542	0.794823440068057	0.998431161219273
Merged-chr7-109455817-2	chr7	109455717	109455917	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001170913, intron 17 of 19)	intron (NM_001170913, intron 17 of 19)	-16764.0	NM_054103	117229.0	Mm.389950	NM_054103	ENSMUSG00000031027	Stk33	4921505G21Rik|AW061264	serine/threonine kinase 33	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-5101533-4	chr18	5101456	5101656	+	967.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347449, intron 22 of 30)	MRLTR33|LTR|ERVK	54967.0	NM_001347449	225115.0	Mm.136791	NM_153153	ENSMUSG00000024236	Svil	AU024053|B430302E16Rik	supervillin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-172631879-2	chr1	172631779	172631979	+	586.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_026725, intron 1 of 1)	intron (NM_026725, intron 1 of 1)	1095.0	NM_026725	68440.0	Mm.33024	NM_026725	ENSMUSG00000026544	Dusp23	1300005N15Rik|LDP-3	dual specificity phosphatase 23	protein-coding	-0.262938268725927	0.2522622186068	-0.253174311642885	0.470705900146643	-0.11257710216867	-0.247353003711843	-0.252126114197378	-0.256201588770392	-2.91420122766614	0.225524324957015	1
Merged-chr8-70509530-2	chr8	70509413	70509613	+	811.208374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_151735)	promoter-TSS (NR_151735)	432.0	NM_001348229	22186.0	Mm.297372	NM_019883	ENSMUSG00000090137	Uba52	Cep52|D8Ertd21e|Gm1863|Rps27a|Ubb|Ubc	ubiquitin A-52 residue ribosomal protein fusion product 1	protein-coding	1.9969952623838	1.75496278736241	1.81074611813529	0.996125778808379	1.57115856881616	1.03204491537402	1.82590777963735	1.37726108043672	-0.681623176787838	0.574160234823158	0.964634218270386
Merged-chr2-166758020-3	chr2	166757917	166758117	+	842.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35750.0	NM_023815	76367.0	Mm.330796	NM_023815	ENSMUSG00000042854	Trp53rkb	2810408M09Rik|4933401B08Rik|5630401H01Rik|Nori-2|PRPK|Tp53rk|Trp53rk|Trp53tk|mNori-2p	transformation related protein 53 regulating kinase B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-108620707-1	chr4	108620607	108620807	+	695.0	f0_balb.idr	intron (NM_177045, intron 1 of 24)	intron (NM_177045, intron 1 of 24)	751.0	NM_177045	319965.0	Mm.151129	NM_177045	ENSMUSG00000028582	Cc2d1b	A830039B04Rik|Freud2	coiled-coil and C2 domain containing 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165957454-4	chr2	165957209	165957409	+	815.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35328.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	-0.540522610128058	-0.188019161563261	-0.673030759936279	-0.675502686478428	-0.678984960431318	-0.315956428210213	-0.672322950460378	-0.675071303701348	-0.963044542364814	0.72640366959478	1
Merged-chr12-112625175-2	chr12	112625075	112625275	+	698.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007421, intron 1 of 12)	intron (NM_007421, intron 1 of 12)	5128.0	NM_007421	11565.0	Mm.3440	NM_007421	ENSMUSG00000011148	Adssl1	AI528595|Adss|Adss1	adenylosuccinate synthetase like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-76957859-4	chr12	76957754	76957954	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146176, intron 1 of 3)	intron (NM_001146176, intron 1 of 3)	4394.0	NM_008558	17187.0	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-7303491-2	chr19	7303391	7303591	+	829.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080388, intron 1 of 16)	intron (NM_001080388, intron 1 of 16)	-8044.0	NM_001080390	13728.0	Mm.258986	NM_007928	ENSMUSG00000024969	Mark2	EMK-1|Emk|Par-1|Par-1b	MAP/microtubule affinity regulating kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-61362003-2	chr14	61361903	61362103	+	690.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1558.0	NM_026598	68177.0	Mm.22758	NM_026598	ENSMUSG00000021928	Ebpl	5730442K12Rik|EBRP	emopamil binding protein-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-36030240-3	chr12	36030120	36030320	+	609.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025359, intron 1 of 5)	RSINE1|SINE|B4	12258.0	NM_025359	66109.0	Mm.254663	NM_025359	ENSMUSG00000020577	Tspan13	1100001I23Rik|NET-6|Tm4sf13	tetraspanin 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-44590389-3	chr10	44590231	44590431	+	723.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-131583.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-23748089-2	chr13	23747989	23748189	+	667.166626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_175664)	TTS (NM_175664)	1355.0	NM_175664	319178.0	Mm.390567	NM_175664	ENSMUSG00000075031	Hist1h2bb	H2b-143	histone cluster 1, H2bb	protein-coding	-1.8429182434137	-1.8129848525291	-1.82203695700074	-1.54461076807193	-1.84081697472045	-1.81102322372834	-1.81998775896484	-1.82814164409203	-1.43114970378833	0.684630132144154	1
Merged-chr2-91476364-4	chr2	91476272	91476472	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001145857, exon 9 of 12)	exon (NM_001145857, exon 9 of 12)	18841.0	NM_001145857	228357.0	Mm.275149	NM_172668	ENSMUSG00000027253	Lrp4	6430526J12Rik|D230026E03|Megf7|mdig	low density lipoprotein receptor-related protein 4	protein-coding	1.60972744253253	2.13844558612308	2.61162169579752	1.25196223036689	1.78031723461508	2.15458106501559	2.71613317784607	2.54957485696407	0.786251292506751	0.418365236219288	0.898272388002688
Merged-chr8-120526779-2	chr8	120526679	120526879	+	695.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198671, intron 1 of 15)	intron (NM_198671, intron 1 of 15)	-9078.0	NM_001145897	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-33394682-4	chr17	33394585	33394785	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009542)	promoter-TSS (NM_009542)	-48.0	NM_009542	22643.0	Mm.4417	NM_009542	ENSMUSG00000055240	Zfp101	AI316498|AI325003	zinc finger protein 101	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-83103201-4	chr8	83103155	83103355	+	971.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62097.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	4.10571895401085	4.28336436788812	4.33085177924959	3.53423817354894	5.6370037117951	4.78136008086734	5.54829781636442	4.76259333622965	1.4236578933281	0.000255292768894646	0.00651702689616589
Merged-chr7-80504896-3	chr7	80504794	80504994	+	779.305542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042527, intron 5 of 21)	L3|LINE|CR1	30104.0	NM_007550	12144.0	Mm.12932	NM_007550	ENSMUSG00000030528	Blm	-	Bloom syndrome, RecQ like helicase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-24594821-3	chr12	24594675	24594875	+	854.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145890, intron 6 of 13)	intron (NM_145890, intron 6 of 13)	14056.0	NM_145890	195733.0	Mm.263068	NM_145890	ENSMUSG00000020656	Grhl1	LBP-32|MGR|Tcfcp2l2	grainyhead like transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-38088110-1	chr15	38088010	38088210	+	552.0	f1_c57bl6.idr	Intergenic	B4|SINE|B4	-9256.0	NM_001081359	70790.0	Mm.476840	NM_027553	ENSMUSG00000037487	Ubr5	Edd|Edd1	ubiquitin protein ligase E3 component n-recognin 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-110508106-4	chr12	110508011	110508211	+	840.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081457, intron 1 of 12)	MIRb|SINE|MIR	22372.0	NM_012023	26931.0	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-122987109-2	chr3	122987009	122987209	+	606.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2662.0	NM_133857	99526.0	Mm.491248	NM_133857	ENSMUSG00000039701	Usp53	AA939927|Phxr3|Sp6|mKIAA1350|mbo	ubiquitin specific peptidase 53	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-113356006-1	chr6	113355906	113356106	+	541.0	f1_balb.idr	Intergenic	B1_Mus2|SINE|Alu	-12084.0	NM_133926	52163.0	Mm.277373	NM_133926	ENSMUSG00000030272	Camk1	AI505105|CaMKIalpha|D6Ertd263e	calcium/calmodulin-dependent protein kinase I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-122376818-4	chr14	122376718	122376918	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029556, intron 4 of 7)	intron (NM_029556, intron 4 of 7)	74297.0	NR_033325	328479.0	Mm.86095	NR_033325	ENSMUSG00000064052	Gm5089	6530402A20|C030005G22Rik|EG328479	predicted gene 5089	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-107291507-4	chr8	107291408	107291608	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_039557, intron 2 of 3).3	intron (NR_039557, intron 2 of 3).3	-1962.0	NM_018823	54446.0	Mm.390057	NM_018823	ENSMUSG00000003847	Nfat5	AI225870|B130038B15Rik|CAG-8|CAG80|NFATL1|OREBP|TonEBP|mKIAA0827|nfatz	nuclear factor of activated T cells 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-90028685-2	chr7	90028585	90028785	+	730.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_110364)	promoter-TSS (NR_110364)	-474.0	NR_110365	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-23844649-1	chr5	23844549	23844749	+	724.666687	f0_c57.idr	promoter-TSS (NM_025394)	promoter-TSS (NM_025394)	-504.0	NM_025394	66169.0	Mm.291868	NM_025394	ENSMUSG00000028998	Tomm7	1110020J08Rik|AW047273|Tom7	translocase of outer mitochondrial membrane 7	protein-coding	0.193745324122953	0.429074414473071	-0.0545114592311249	-0.0582839974353059	0.0780688098048586	-0.0485081563746887	-0.0534319942683386	0.560941555242808	0.164646347414518	0.939095590658307	1
Merged-chr1-165653700-3	chr1	165653639	165653839	+	756.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038846, intron 5 of 5)	L2b|LINE|L2	-19198.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-119969412-3	chr4	119969302	119969502	+	635.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_010657, intron 1 of 8)	intron (NM_010657, intron 1 of 8)	154724.0	NM_010657	16656.0	Mm.302758	NM_010657	ENSMUSG00000028634	Hivep3	2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3	human immunodeficiency virus type I enhancer binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-30656634-2	chr10	30656534	30656734	+	625.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001111267)	promoter-TSS (NM_001111267)	-767.0	NM_001111267	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-59878230-3	chr4	59878139	59878339	+	825.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172468, intron 3 of 8)	intron (NM_172468, intron 3 of 8)	36817.0	NM_021053	30936.0	Mm.284433	NM_021053	ENSMUSG00000028386	Slc46a2	5430429N04Rik|Ly110|TSO-1C12|Tscot	solute carrier family 46, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-5308752-4	chr9	5308642	5308842	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007609)	promoter-TSS (NM_007609)	-107.0	NM_007609	12363.0	Mm.1569	NM_007609	ENSMUSG00000033538	Casp4	CASP-11|CASP-4|Casp11|Caspl|ich-3	caspase 4, apoptosis-related cysteine peptidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21513658-2	chr9	21513558	21513758	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-3424.0	NR_136911	17083.0	Mm.196618	NM_010744	ENSMUSG00000032180	Tmed1	Il1rl1l|Ly84l|St2l	transmembrane p24 trafficking protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-7088941-3	chr15	7088822	7089022	+	748.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40650.0	NM_001113386	16880.0	Mm.149720	NM_013584	ENSMUSG00000054263	Lifr	A230075M04Rik|AW061234|LIF	leukemia inhibitory factor receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-8240857-4	chr10	8240765	8240965	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177387, intron 7 of 7)	intron (NM_177387, intron 7 of 7)	277960.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70350435-2	chr8	70350335	70350535	+	739.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030680, intron 1 of 23)	intron (NM_030680, intron 1 of 23)	2844.0	NM_030680	19704.0	Mm.258280	NM_030680	ENSMUSG00000058301	Upf1	B430202H16Rik|NORF1|PNORF-1|Rent1|Upflp	UPF1 regulator of nonsense transcripts homolog (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44985677-4	chr7	44985585	44985785	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045521, intron 1 of 11)	intron (NR_045521, intron 1 of 11)	735.0	NM_001252476	15469.0	Mm.27545	NM_019830	ENSMUSG00000109324	Prmt1	6720434D09Rik|AW214366|Hrmt1l2|Mrmt1	protein arginine N-methyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-136919798-2	chr5	136919698	136919898	+	749.833313	f1_balb.idr|f1_c57bl6.idr	intron (NR_015555, intron 1 of 3)	intron (NR_015555, intron 1 of 3)	652.0	NR_015555	66752.0	Mm.135764	NR_015555	ENSMUSG00000097908	4933404O12Rik	AW494809	RIKEN cDNA 4933404O12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-65111151-4	chr1	65111013	65111213	+	954.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175293, intron 5 of 7)	RLTR33|LTR|ERVK	-7750.0	NM_007774	12964.0	Mm.26904	NM_007774	ENSMUSG00000044429	Cryga	Cryg-4|DGcry-4	crystallin, gamma A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-3907933-3	chr16	3907801	3908001	+	761.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153801, intron 1 of 3)	intron (NR_153801, intron 1 of 3)	752.0	NR_153801	105246059.0		NR_153801		Gm41410	-	predicted gene, 41410	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-56286831-3	chr8	56286711	56286911	+	960.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7741.0	NM_008278	15446.0	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-59002369-4	chr13	59002267	59002467	+	857.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025074, intron 13 of 17)	intron (NM_001025074, intron 13 of 17)	194670.0	NM_001025074	18212.0	Mm.130054	NM_008745	ENSMUSG00000055254	Ntrk2	GP145-TrkB/GP95-TrkB|Tkrb|trk-B|trkB	neurotrophic tyrosine kinase, receptor, type 2	protein-coding	-0.314454790196021	-0.301912055806633	-0.306032090395863	0.303249267225113	0.153840998116203	-0.300981880880509	-0.129413637526558	-0.308650002007212	-0.112474472378261	0.963910235412705	1
Merged-chr4-138434702-4	chr4	138434614	138434814	+	997.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026689)	promoter-TSS (NM_026689)	42.0	NM_026689	68350.0	Mm.103413	NM_026689	ENSMUSG00000041241	Mul1	0610009K11Rik|AV000801|Gide	mitochondrial ubiquitin ligase activator of NFKB 1	protein-coding	2.3739617705955	2.1176047027913	3.09135421423327	3.24477740642145	2.28943843537457	1.4203188605527	2.48951567431511	1.81605927894145	-1.52399974976534	0.0796785606515091	0.429260920861999
Merged-chr5-65073419-3	chr5	65073304	65073504	+	869.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-34164.0	NM_001347355	71778.0	Mm.10281	NM_175174	ENSMUSG00000054920	Klhl5	1300013C10Rik	kelch-like 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-9061491-1	chr13	9061391	9061591	+	691.0	f0_balb.idr	Intergenic	Intergenic	-32390.0	NM_001311117	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-64277123-3	chr7	64277027	64277227	+	891.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1G|LTR|ERVL-MaLR	-10543.0	NM_172742	233315.0	Mm.214959	NM_172742	ENSMUSG00000030522	Mtmr10	BB128963|C79734	myotubularin related protein 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-120015636-2	chr9	120015536	120015736	+	657.25	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011724, exon 3 of 3)	3' UTR (NM_011724, exon 3 of 3)	7962.0	NM_011724	22437.0	Mm.10117	NM_011724	ENSMUSG00000079243	Xirp1	AI415219|Cmya1	xin actin-binding repeat containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-91402907-3	chr5	91402812	91403012	+	970.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007568)	promoter-TSS (NM_007568)	82.0	NM_007568	12223.0	Mm.2024	NM_007568	ENSMUSG00000082361	Btc	Bcn	betacellulin, epidermal growth factor family member	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-86666788-2	chr6	86666687	86666887	+	723.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_010751, intron 2 of 5)	intron (NM_010751, intron 2 of 5)	2372.0	NM_010751	17119.0	Mm.279580	NM_010751	ENSMUSG00000001156	Mxd1	AW122478|Mad|Mad1	MAX dimerization protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-55388716-2	chr11	55388616	55388816	+	547.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	31364.0	NM_009242	20692.0	Mm.291442	NM_009242	ENSMUSG00000018593	Sparc	BM-40|ON	secreted acidic cysteine rich glycoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-117989361-4	chr2	117989229	117989429	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_126479, intron 8 of 9)	intron (NR_126479, intron 8 of 9)	121873.0	NR_126479	329496.0	Mm.235844	NR_126479	ENSMUSG00000087203	Gm13986	C230060E24	predicted gene 13986	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-16978135-6	chr6	16977990	16978190	+	912.7666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-79649.0	NM_031198	21426.0	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-19068947-2	chr3	19068847	19069047	+	775.266663	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR40|LTR|ERVK	94148.0	NM_028840	74252.0	Mm.200383	NM_028840	ENSMUSG00000027599	Armc1	2310016N05Rik|2900046P06Rik|3110009G21Rik|AA409258|AW048872|Arcp|C330014L16Rik	armadillo repeat containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-113335029-1	chr11	113334929	113335129	+	1000.0	f1_balb.idr	intron (NM_027216, intron 6 of 9)	ORR1E|LTR|ERVL-MaLR	-125360.0	NR_040276	319871.0	Mm.383743	NR_040276	ENSMUSG00000085421	4732490B19Rik	-	RIKEN cDNA 4732490B19 gene	ncRNA	2.52247855934303	3.25912352756448	1.98756376012562	3.63861584330052	4.00644737260354	3.58299185699584	3.62608595488231	4.35333499991135	1.41419823680742	0.0204144468400061	0.181790598604448
Merged-chr2-167477228-4	chr2	167477109	167477309	+	932.991699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_148929)	TTS (NM_148929)	-15436.0	NM_030743	81018.0	Mm.22225	NM_030743	ENSMUSG00000006418	Rnf114	1110008J21Rik|AI225886|AW549494|Zfp228|Zfp313|Znf228	ring finger protein 114	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-107802040-3	chr4	107801934	107802134	+	823.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033496)	promoter-TSS (NR_033496)	-225.0	NR_033496	16975.0	Mm.442134	NM_053073	ENSMUSG00000028613	Lrp8	4932703M08Rik|AA921429|AI848122|ApoER2|Lr8b	low density lipoprotein receptor-related protein 8, apolipoprotein e receptor	protein-coding	1.12203870415731	1.76541469119546	0.681130373252781	0.876721704482784	1.35783459321684	1.68095040237576	0.684332691902807	0.671793767587797	-0.0226455878787446	0.987932913259874	0.998431161219273
Merged-chr3-90322286-2	chr3	90322186	90322386	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19368.0	NM_139304	229542.0	Mm.270999	NM_139304	ENSMUSG00000042390	Gatad2b	AL118180|C430014D17Rik|P66beta|mKIAA1150	GATA zinc finger domain containing 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-8056537-4	chr5	8056460	8056660	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080974)	promoter-TSS (NM_001080974)	18.0	NM_001080974	109552.0	Mm.96211	NM_025618	ENSMUSG00000003161	Sri	2210417O06Rik|2900070H08Rik|Sor	sorcin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-104459571-4	chr5	104459474	104459674	+	936.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_008861, exon 1 of 15)	5' UTR (NM_008861, exon 1 of 15)	117.0	NM_008861	18764.0	Mm.6442	NM_008861	ENSMUSG00000034462	Pkd2	C030034P18Rik|PC2|TRPP2	polycystic kidney disease 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-38267843-3	chr7	38267675	38267875	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025390, intron 2 of 6)	intron (NM_025390, intron 2 of 6)	3573.0	NM_025390	66161.0	Mm.22284	NM_025390	ENSMUSG00000030423	Pop4	1110023P21Rik|Rpp29	processing of precursor 4, ribonuclease P/MRP family, (S. cerevisiae)	protein-coding	2.81245679187836	3.06158184121979	2.80818617070444	2.85704871442108	4.147340731112	4.36671933575652	4.50047694177497	3.64083267726488	1.9756503762835	0.000187047073797965	0.00509271737842962
Merged-chr13-20788207-4	chr13	20788102	20788302	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5911.0	NM_001281854	27052.0	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	5.82292779630395	5.58301619345974	5.92020097395261	6.21089878511776	5.25532301868513	5.52399332816391	5.19297103681269	5.0121203176245	-0.73786462567859	0.00634130343766277	0.0794939502260114
Merged-chr15-17913617-2	chr15	17913517	17913717	+	948.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	456010.0	NR_045711	70886.0	Mm.399021	NR_045711	ENSMUSG00000098150	4921515E04Rik	-	RIKEN cDNA 4921515E04 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165854421-1	chr2	165854321	165854521	+	581.0	f1_c57bl6.idr	intron (NM_001252587, intron 2 of 11)	intron (NM_001252587, intron 2 of 11)	3752.0	NM_001252585	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	1.46092569196705	1.77769221073784	0.819829387242712	1.31618481829889	1.37123577054317	0.837813227089253	0.823098323020382	1.75226852863018	-0.442519624705356	0.753251891830111	0.998431161219273
Merged-chr12-79628195-2	chr12	79628097	79628297	+	705.0	f0_balb.idr|f0_c57.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	296536.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-148533736-3	chr6	148533705	148533905	+	936.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	80504.0	NR_045867	622319.0	Mm.491049	NM_001037912	ENSMUSG00000070995	Gm6313	EG622319	predicted gene 6313	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-36346656-2	chr19	36346556	36346756	+	653.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32411.0	NM_029508	76073.0	Mm.259180	NM_029508	ENSMUSG00000024805	Pcgf5	0610009F02Rik|1110054A01Rik|5830406C17Rik|5830443C21Rik|9530023M17Rik|AI324127	polycomb group ring finger 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-186676262-4	chr1	186676081	186676281	+	734.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009367, intron 1 of 6)	intron (NM_009367, intron 1 of 6)	29808.0	NM_009367	21808.0	Mm.18213	NM_009367	ENSMUSG00000039239	Tgfb2	BB105277|Tgf-beta2|Tgfb-2	transforming growth factor, beta 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-118499466-2	chr2	118499366	118499566	+	741.416626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19770.0	NM_009273	20813.0	Mm.363404	NM_009273	ENSMUSG00000009549	Srp14	14kDa|AW536328	signal recognition particle 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-74715365-3	chr17	74715234	74715434	+	799.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-2416.0	NM_152817	74196.0	Mm.209503	NM_152817	ENSMUSG00000024078	Ttc27	2610511O17Rik	tetratricopeptide repeat domain 27	protein-coding	0.00977832920475052	0.0392267269654759	0.0297794978057624	0.022360774934278	0.989460685748303	0.0413310797046794	1.24265069161041	0.0236652508692696	4.49069102935687	0.0354148003911287	1
Merged-chr5-105395411-4	chr5	105395297	105395497	+	836.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20378.0	NM_001033550	433926.0	Mm.439781	NM_001033550	ENSMUSG00000070639	Lrrc8b	2210408K08Rik|R75581|Ta-lrrp|mKIAA0231	leucine rich repeat containing 8 family, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-125385363-7	chr5	125385255	125385455	+	870.7041019999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_019639)	TTS (NM_019639)	4662.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	-1.84290330806959	-1.81297841501903	-1.82202794967551	-1.82946150688462	-1.69841214230253	-1.81101734310794	-1.67758883978339	-1.82813090369827	1.43472749533542	0.684151459466795	1
Merged-chr10-117063896-4	chr10	117063819	117064019	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358767)	promoter-TSS (NM_001358767)	-67.0	NM_007636	12461.0	Mm.247788	NM_007636	ENSMUSG00000034024	Cct2	Cctb	chaperonin containing Tcp1, subunit 2 (beta)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-101679558-3	chr13	101679458	101679658	+	728.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13072.0	NM_001024955	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-51648179-2	chr1	51648083	51648283	+	665.166626	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51465.0	NR_151621	100045066.0	Mm.404734	NR_151621		Gm17767	-	predicted gene, 17767	ncRNA	1.323986293045	3.29815491208499	2.53508389587285	2.16310504191642	0.854650754969099	0.970864103116675	0.935473136077991	1.61832910044517	-3.82410800114561	0.00225350645762588	0.0365043705831621
Merged-chr11-28506914-2	chr11	28506864	28507064	+	839.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_181577, intron 2 of 4)	intron (NM_181577, intron 2 of 4)	77360.0	NM_001166661	216613.0	Mm.93759	NM_181577	ENSMUSG00000032878	Ccdc85a	-	coiled-coil domain containing 85A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-111064984-2	chr9	111064884	111065084	+	635.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7466.0	NM_001302376	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-90930079-3	chr13	90929982	90930182	+	881.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6960.0	NM_024175	66475.0	Mm.306302	NM_024175	ENSMUSG00000049517	Rps23	2410044J15Rik	ribosomal protein S23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126584441-5	chr8	126584344	126584544	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8992.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	3.31242607706649	4.38643985366237	4.62888443711516	2.05057368062312	4.01172387902724	4.71732773099404	4.70207689017839	4.03726839310953	0.647292767114215	0.260367384558497	0.761428635017755
Merged-chr1-180971904-3	chr1	180971809	180972009	+	848.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144794, intron 19 of 22)	B2_Mm2|SINE|B2	29391.0	NM_144794	208795.0	Mm.185518	NM_144794	ENSMUSG00000026519	Tmem63a	BC014795|Tmem64a	transmembrane protein 63a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139790691-2	chr5	139790591	139790791	+	919.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010757)	promoter-TSS (NM_010757)	-845.0	NM_010757	17135.0	Mm.157313	NM_010757	ENSMUSG00000018143	Mafk	AW061068|NF-E2|Nfe2u	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein K (avian)	protein-coding	1.35942602153133	1.6685089899243	0.93114185470927	1.94763373927642	1.48795776253197	1.80588024738892	0.934803316556566	1.29517943279269	-0.391251642696524	0.756925842731922	0.998431161219273
Merged-chr4-110668222-4	chr4	110668066	110668266	+	838.516663	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001284190, intron 3 of 12)	intron (NM_001284190, intron 3 of 12)	270468.0	NM_030231	78933.0	Mm.435620	NM_030231	ENSMUSG00000061298	Agbl4	4930578N11Rik|4931433A01Rik	ATP/GTP binding protein-like 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-89195308-2	chr15	89195208	89195408	+	778.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027081, intron 1 of 19)	intron (NM_027081, intron 1 of 19)	1166.0	NM_027081	69440.0	Mm.482128	NM_027081	ENSMUSG00000015377	Dennd6b	1700027J05Rik|AI414881|Fam116b	DENN/MADD domain containing 6B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-111676472-2	chr10	111676372	111676572	+	896.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-82199.0	NR_045344	71321.0	Mm.410785	NR_045344	ENSMUSG00000097082	4933440J02Rik	-	RIKEN cDNA 4933440J02 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-3741117-6	chr10	3741021	3741221	+	707.944458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159942, intron 1 of 16)	intron (NM_001159942, intron 1 of 16)	744.0	NM_001159942	213783.0	Mm.150831	NM_001033253	ENSMUSG00000040624	Plekhg1	D10Ertd733e|Gm521|mKIAA1209	pleckstrin homology domain containing, family G (with RhoGef domain) member 1	protein-coding	3.64628703679596	3.28346060777624	3.7661301922875	3.48009966412248	2.51210053041791	2.83160325483969	3.29090390149929	2.50104854258676	-1.23724902850192	0.0403034661587095	0.28635668395511
Merged-chr11-115535996-2	chr11	115535896	115536096	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133354, intron 1 of 3)	CpG	234.0	NM_133354	170930.0	Mm.29923	NM_133354	ENSMUSG00000020738	Sumo2	SUMO-2|Smt3A|Smt3b|Smt3h2	small ubiquitin-like modifier 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-88247993-2	chr1	88247893	88248093	+	836.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001281466, intron 26 of 41)	ORR1F|LTR|ERVL-MaLR	20973.0	NM_001281466	100040766.0	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	Heatr7b1	maestro heat-like repeat family member 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-61372295-4	chr9	61372202	61372402	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001083927)	promoter-TSS (NM_001083927)	-64.0	NM_001083928	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-114638703-2	chr9	114638603	114638803	+	617.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153585, intron 1 of 19)	intron (NM_153585, intron 1 of 19)	1497.0	NM_153585	78893.0	Mm.283708	NM_153585	ENSMUSG00000056167	Cnot10	2600001P13Rik	CCR4-NOT transcription complex, subunit 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-4453204-4	chr2	4453117	4453317	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 2 of 23)	intron (NM_001177843, intron 2 of 23)	52241.0	NM_001177843	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-21370683-7	chr12	21370637	21370837	+	910.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291871, intron 1 of 18)	intron (NM_001291871, intron 1 of 18)	2895.0	NR_102380	11491.0	Mm.27681	NM_009615	ENSMUSG00000052593	Adam17	CD156b|Tace	a disintegrin and metallopeptidase domain 17	protein-coding	1.72722970390672	3.29641052724892	3.09342828205552	3.00505680478407	3.59556150988864	2.21263776103512	3.29660689049072	3.54539760442194	0.626989182377866	0.386266192422031	0.876334568009738
Merged-chr10-77515090-2	chr10	77514990	77515190	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133998, intron 1 of 5)	intron (NM_133998, intron 1 of 5)	723.0	NM_133998	108707.0	Mm.259547	NM_133998	ENSMUSG00000032977	Fam207a	1810008A18Rik|AI303072	family with sequence similarity 207, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-59882573-4	chr2	59882476	59882676	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028118)	promoter-TSS (NM_028118)	30.0	NM_001159636	72137.0	Mm.288734	NM_028118	ENSMUSG00000026988	Wdsub1	1700048E19Rik|2610014F08Rik	WD repeat, SAM and U-box domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-84348101-3	chr13	84348010	84348210	+	790.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	125814.0	NM_175187	72745.0	Mm.295063	NM_175187	ENSMUSG00000035762	Tmem161b	2810446P07Rik|AI843389	transmembrane protein 161B	protein-coding	1.03287538747123	1.13852165251734	1.90053070272661	2.07701804434507	1.33566694251876	1.14596252919367	0.886689556891796	1.53706255379307	-1.29522207275211	0.302356971764162	0.804363402932686
Merged-chr3-97232532-4	chr3	97232414	97232614	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5150.0	NM_029933	77578.0	Mm.226175	NM_029933	ENSMUSG00000038256	Bcl9	2610202E01Rik|8030475K17Rik|A330041G23Rik|Gm130	B cell CLL/lymphoma 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99467454-3	chr7	99467361	99467561	+	867.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_028145, intron 1 of 6)	intron (NM_028145, intron 1 of 6)	1457.0	NM_028145	72184.0	Mm.153585	NM_028145	ENSMUSG00000035298	Klhl35	2810406K13Rik	kelch-like 35	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-8905114-1	chr17	8905014	8905214	+	716.0	f0_balb.idr	intron (NM_001347321, intron 2 of 21)	intron (NM_001347321, intron 2 of 21)	55129.0	NM_001347321	23984.0	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-6284784-2	chr7	6284684	6284884	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-1796.0	NM_001024928	384763.0	Mm.276279	NM_001024928	ENSMUSG00000054893	Zfp667	A830025F02Rik|Mip1|ZNF667	zinc finger protein 667	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-87541777-2	chr1	87541677	87541877	+	701.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111314, intron 2 of 14)	ORR1F|LTR|ERVL-MaLR	-31415.0	NM_019867	53972.0	Mm.435439	NM_019867	ENSMUSG00000026259	Ngef	Tims2|ephexin	neuronal guanine nucleotide exchange factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-123253099-4	chr8	123252989	123253189	+	883.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028200, intron 1 of 14)	intron (NM_028200, intron 1 of 14)	-1106.0	NM_020497	57247.0	Mm.379084	NM_020497	ENSMUSG00000001065	Zfp276	AW048709|D8Ertd370e|D8Ertd377e|Znf276	zinc finger protein (C2H2 type) 276	protein-coding	0.178745067454011	0.0613247466221855	0.480815549794415	0.449001437981697	0.0476657724669854	0.062408695764652	0.489832698086884	0.207717190278464	-0.704277550551184	0.722971313861116	1
Merged-chr10-21827100-4	chr10	21826980	21827180	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55104.0	NM_001161845	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99970772-4	chr15	99970653	99970853	+	998.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001284522, intron 1 of 15)	RMER6A|LTR|ERVK	688.0	NM_001284522	207214.0	Mm.28811	NM_001024526	ENSMUSG00000023025	Larp4	DXErtd793|DXErtd793e	La ribonucleoprotein domain family, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129207198-2	chr2	129207098	129207298	+	659.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355252, intron 1 of 5)	intron (NM_001355252, intron 1 of 5)	102.0	NM_001355252	20515.0	Mm.272675	NM_015747	ENSMUSG00000027397	Slc20a1	AI607883|Glvr-1|Glvr1	solute carrier family 20, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-154548904-4	chr2	154548803	154549003	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029305)	promoter-TSS (NM_029305)	-1.0	NM_029305	75480.0	Mm.440434	NM_029305	ENSMUSG00000038523	1700003F12Rik	-	RIKEN cDNA 1700003F12 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-99210088-2	chr5	99209988	99210188	+	822.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	42839.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-84241601-4	chr1	84241506	84241706	+	942.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003948, intron 1 of 2)	intron (NM_001003948, intron 1 of 2)	-22645.0	NR_105771	102465181.0		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-69349445-1	chr17	69349345	69349545	+	761.0	f0_balb.idr	Intergenic	Intergenic	-33730.0	NM_001356283	22666.0	Mm.29434	NM_009547	ENSMUSG00000049672	Zbtb14	ZF5|Zfp161|b2b1982Clo	zinc finger and BTB domain containing 14	protein-coding	2.30114932962139	1.7320297124883	3.0491946110151	2.63679037528052	2.32080731941437	1.46150457739904	3.07283592387501	2.74221664257731	0.0265128726728616	0.976158579621858	0.998431161219273
Merged-chr4-53095487-2	chr4	53095387	53095587	+	971.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 8 of 49)	intron (NM_013454, intron 8 of 49)	64408.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6383680-2	chr19	6383580	6383780	+	619.833374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011224)	promoter-TSS (NM_011224)	-728.0	NM_011224	19309.0	Mm.27806	NM_011224	ENSMUSG00000032648	Pygm	AI115133|PG	muscle glycogen phosphorylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-20478958-4	chr14	20478852	20479052	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110794, intron 1 of 12)	intron (NM_001110794, intron 1 of 12)	1181.0	NM_001110794	11750.0	Mm.280231	NM_009674	ENSMUSG00000021814	Anxa7	AI265384|AI316497|Anx7|synexin	annexin A7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-12466751-2	chr13	12466651	12466851	+	977.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-5013.0	NM_001291057	56048.0	Mm.474138	NM_018886	ENSMUSG00000057554	Lgals8	1200015E08Rik|AI326142|D13Ertd524e|Lgals-8	lectin, galactose binding, soluble 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-69613300-2	chr13	69613200	69613400	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145354, intron 3 of 18)	B2_Mm2|SINE|B2	1284.0	NM_145354	28114.0	Mm.260009	NM_145354	ENSMUSG00000021595	Nsun2	D13Wsu123e|Misu	NOL1/NOP2/Sun domain family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-118879196-4	chr10	118879120	118879320	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	-10317.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-31698559-4	chr5	31698462	31698662	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153196)	promoter-TSS (NM_153196)	512.0	NM_144541	107976.0	Mm.482126	NM_144541	ENSMUSG00000052139	Babam2	6030405P19Rik|AI429776|B830038C02Rik|Bre	BRISC and BRCA1 A complex member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-17855548-2	chr5	17855448	17855648	+	714.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159558, intron 1 of 15)	IAPEz-int|LTR|ERVK	-5756.0	NM_001159556	12491.0	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 molecule	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-134468357-4	chr4	134468252	134468452	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019641)	promoter-TSS (NM_019641)	32.0	NM_019641	16765.0	Mm.378957	NM_019641	ENSMUSG00000028832	Stmn1	19k|Lag|Lap18|Op18|P18|P19|Pig|Pp17|Pp18|Pp19|Pr22|Smn	stathmin 1	protein-coding	3.08467865142195	2.64747863402943	2.0392666575297	3.31916006054496	3.69322286285812	2.66798828459137	1.53777741627192	3.33593745174638	0.316867051007694	0.695295635850645	0.997870549741095
Merged-chr14-31026311-2	chr14	31026211	31026411	+	577.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359857, intron 4 of 30)	intron (NM_001359857, intron 4 of 30)	6606.0	NM_001359856	66923.0	Mm.27913	NM_025847	ENSMUSG00000042323	Pbrm1	2610016F04Rik|AI507524|BAF180|Pb1	polybromo 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-30785019-2	chr10	30784919	30785119	+	604.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358842, intron 1 of 14)	intron (NM_001358842, intron 1 of 14)	18307.0	NM_001358841	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-11037739-2	chr19	11037639	11037839	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	12827.0	NR_102366	107350.0	Mm.6381	NM_001177351	ENSMUSG00000075010	AW112010	-	expressed sequence AW112010	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-110696449-4	chr12	110696339	110696539	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010480)	promoter-TSS (NM_010480)	-44.0	NM_010480	15519.0	Mm.1843	NM_010480	ENSMUSG00000021270	Hsp90aa1	86kDa|89kDa|AL024080|AL024147|Hsp86-1|Hsp89|Hsp90|Hspca|hsp4	heat shock protein 90, alpha (cytosolic), class A member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-86544749-4	chr9	86544650	86544850	+	993.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177208, intron 33 of 38)	intron (NM_177208, intron 33 of 38)	27092.0	NM_001163746	109785.0	Mm.390201	NM_028352	ENSMUSG00000056131	Pgm3	2810473H05Rik|Agm1|BB187688|C77933|PAGM|Pgm-3	phosphoglucomutase 3	protein-coding	2.40599998541887	1.96072701108282	3.00098668472906	1.44234744748284	1.1399353479756	2.42133375698582	2.81276397287829	1.44965146437068	-0.408778714034109	0.694202332963135	0.997569417625163
Merged-chr1-135344197-2	chr1	135344097	135344297	+	669.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_053106, intron 1 of 2)	(TG)n|Simple_repeat|Simple_repeat	19384.0	NM_053106	93689.0	Mm.180124	NM_053106	ENSMUSG00000048096	Lmod1	9530015K06Rik|SM-Lmod	leiomodin 1 (smooth muscle)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-65629389-4	chr16	65629282	65629482	+	973.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66685.0	NM_026879	68942.0	Mm.432944	NM_026879	ENSMUSG00000004843	Chmp2b	1190006E07Rik	charged multivesicular body protein 2B	protein-coding	0.959560285832038	1.10370736878047	0.583309596147136	0.576231774986761	1.16456780144189	1.11395866009558	0.585326142499127	1.14042568252149	0.982773181144551	0.537968552607024	1
Merged-chr8-126802014-1	chr8	126801914	126802114	+	544.0	f1_c57bl6.idr	Intergenic	Intergenic	-47006.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116869416-3	chr11	116869319	116869519	+	884.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178620, intron 10 of 12)	intron (NM_178620, intron 10 of 12)	15419.0	NM_001361586	69900.0	Mm.348004	NM_178620	ENSMUSG00000020818	Mfsd11	2600014M03Rik	major facilitator superfamily domain containing 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52236333-4	chr13	52236235	52236435	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	139594.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-136259151-2	chr5	136259051	136259251	+	732.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291238, intron 14 of 22)	intron (NM_001291238, intron 14 of 22)	-14211.0	NM_018825	23921.0	Mm.425294	NM_018825	ENSMUSG00000005057	Sh2b2	Aps	SH2B adaptor protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-93841548-2	chr2	93841440	93841640	+	676.5	f0_balb.idr|f1_balb.idr	intron (NM_183220, intron 7 of 14)	intron (NM_183220, intron 7 of 14)	8259.0	NM_183220	329470.0	Mm.486910	NM_183220	ENSMUSG00000040272	Accs	2610203E10Rik|Phacs	1-aminocyclopropane-1-carboxylate synthase (non-functional)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-86251695-2	chr15	86251595	86251795	+	734.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145476, intron 4 of 12)	intron (NM_145476, intron 4 of 12)	-25980.0	NM_001358062	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56474564-2	chr17	56474483	56474683	+	870.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252455, intron 1 of 27)	CpG	1897.0	NM_001252455	19280.0	Mm.258771	NM_011218	ENSMUSG00000013236	Ptprs	AL022616|PTP|PTP-NU3|PTPNU-3|PTPsigma|Ptpt9|R-PTP-S|RPTPsigma	protein tyrosine phosphatase, receptor type, S	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-45972256-4	chr4	45972154	45972354	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146142)	promoter-TSS (NM_146142)	-43.0	NM_146142	100121.0	Mm.275413	NM_146142	ENSMUSG00000035517	Tdrd7	5730495N10Rik|AI447470|PCTAIRE2BP	tudor domain containing 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-125074698-4	chr5	125074602	125074802	+	900.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011424, intron 14 of 46)	intron (NM_011424, intron 14 of 46)	71227.0	NM_028443	73121.0	Mm.296138	NM_028443	ENSMUSG00000037962	Rflna	3110032G18Rik|Fam101a|cfm|cfm2	refilin A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-150638242-2	chr3	150638142	150638342	+	821.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	385620.0	NR_039540	100628568.0		NR_039540	ENSMUSG00000092830	Mir3963	mmu-mir-3963|mu-mir-3963	microRNA 3963	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-49051604-4	chr9	49051484	49051684	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3997.0	NM_012039	26951.0	Mm.24791	NM_012039	ENSMUSG00000032264	Zw10	6330566F14Rik|MmZw10	zw10 kinetochore protein	protein-coding	0.820513451621625	0.511752129868434	0.497993808872019	0.702662975777489	0.829585610863362	1.89289017373996	1.34726556404275	0.489053243340221	2.81738649265766	0.0793601085358512	0.428644619843852
Merged-chr4-3783565-2	chr4	3783465	3783665	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 12 of 12)	B3|SINE|B2	52090.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-81548956-3	chr7	81548830	81549030	+	793.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172904, exon 7 of 13)	exon (NM_172904, exon 7 of 13)	18051.0	NM_172904	244091.0	Mm.38773	NM_172904	ENSMUSG00000038663	Fsd2	9830160G03Rik|Spryd1	fibronectin type III and SPRY domain containing 2	protein-coding	0.294188883557233	-0.0235612342616384	1.38121205905206	-0.0400050855763311	0.302516470415198	-0.0215104798942943	-0.0307233074548559	-0.0387327941729471	-2.9094392654079	0.168023273972612	1
Merged-chr11-106819671-4	chr11	106819572	106819772	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_025481)	TTS (NM_025481)	30420.0	NM_001166685	320162.0	Mm.30524	NM_177088	ENSMUSG00000018372	Cep95	4732496G21Rik|AI118346|AI448335|Ccdc45|D330027A14Rik|F630025I20Rik	centrosomal protein 95	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3343432-2	chr12	3343332	3343532	+	705.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-21700.0	NM_008445	16570.0	Mm.7688	NM_008445	ENSMUSG00000020668	Kif3c	mKIAA4058	kinesin family member 3C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-5644122-4	chr4	5644021	5644221	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173426)	promoter-TSS (NM_173426)	31.0	NM_173426	242297.0	Mm.331470	NM_173426	ENSMUSG00000049119	Fam110b	1700012H17Rik|5031405P22|AW049855	family with sequence similarity 110, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-59491829-1	chr16	59491729	59491929	+	677.0	f0_balb.idr	exon (NM_025910, exon 10 of 10)	exon (NM_025910, exon 10 of 10)	20054.0	NM_025910	67014.0	Mm.289150	NM_025910	ENSMUSG00000022724	Riox2	1810047J07Rik|2410057H13Rik|3830408E23Rik|AI449204|Mina	ribosomal oxygenase 2	protein-coding	1.06020110655829	0.44893170016036	0.441760855608396	0.856030212175488	0.572708752711056	0.943402603088686	0.621056103745549	0.740763202598915	-0.0740544257163638	0.963756685199843	1
Merged-chr7-141550588-4	chr7	141550474	141550674	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10717.0	NM_001142681	68038.0	Mm.245355	NM_026522	ENSMUSG00000025512	Chid1	3110023E09Rik|AI841869	chitinase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-63368253-2	chr10	63368153	63368353	+	737.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14190.0	NM_001253685	30045.0	Mm.32550	NM_013888	ENSMUSG00000036764	Dnajc12	Jdp1|mJDP1	DnaJ heat shock protein family (Hsp40) member C12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-38186423-2	chr18	38186323	38186523	+	976.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23339.0	NM_029357	75599.0	Mm.36560	NM_029357	ENSMUSG00000051375	Pcdh1	2010005A06Rik|AI585920	protocadherin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72147090-2	chr6	72146990	72147190	+	707.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_011375, exon 5 of 7)	exon (NM_011375, exon 5 of 7)	-23893.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118597471-2	chr9	118597371	118597571	+	864.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger5|DNA|TcMar-Tigger	-9238.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-163611030-2	chr2	163610930	163611130	+	993.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_131225, intron 2 of 3)	intron (NR_131225, intron 2 of 3)	3818.0	NM_001305803	76080.0	Mm.89828	NM_029512	ENSMUSG00000017679	Ttpal	3110080A02Rik|5830472M02Rik	tocopherol (alpha) transfer protein-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-85051462-2	chr16	85051362	85051562	+	687.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001198825, intron 6 of 15)	intron (NM_001198825, intron 6 of 15)	79251.0	NR_045889	100038614.0	Mm.441351	NR_045889	ENSMUSG00000115518	Gm10791	-	predicted gene 10791	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128272071-2	chr10	128271913	128272113	+	912.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019963, intron 1 of 23)	intron (NM_019963, intron 1 of 23)	1515.0	NM_019963	20847.0	Mm.293120	NM_019963	ENSMUSG00000040033	Stat2	1600010G07Rik|AW496480	signal transducer and activator of transcription 2	protein-coding	3.01944932188429	3.10118702789121	3.55147539092482	2.69754138019312	3.04408693858213	2.24270444383047	2.79813379637819	3.41017863683033	-0.309857561009169	0.641547117436455	0.982599433509505
Merged-chr11-50215568-2	chr11	50215468	50215668	+	787.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4748.0	NM_011018	18412.0	Mm.40828	NM_011018	ENSMUSG00000015837	Sqstm1	A170|OSF-6|Osi|STAP|STONE14|p62	sequestosome 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-4842253-2	chr12	4842153	4842353	+	688.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016863)	promoter-TSS (NM_016863)	-658.0	NM_016863	14226.0	Mm.20453	NM_016863	ENSMUSG00000020635	Fkbp1b	12.6kDa|AW494148|FKBP12.6|calstabin2	FK506 binding protein 1b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-62111254-3	chr18	62111216	62111416	+	844.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	68665.0	NM_007420	11555.0	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-64281158-4	chr13	64280992	64281192	+	998.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-6104.0	NM_172587	218294.0	Mm.25335	NM_172587	ENSMUSG00000033102	Cdc14b	2810432N10Rik|A530086E13Rik|AA472821|CDC14B3|Cdc14B1	CDC14 cell division cycle 14B	protein-coding	1.77988480931921	1.84711891430928	2.59456302056518	2.10217313789268	1.66690072114486	1.8604627964567	1.20235503807828	2.00468579308965	-1.12588333539102	0.266270441651688	0.769151254995423
Merged-chr2-150840320-4	chr2	150840218	150840418	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151505, intron 6 of 12)	intron (NR_151505, intron 6 of 12)	2252.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-146162794-4	chr6	146162695	146162895	+	989.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019923, intron 52 of 56)	intron (NM_019923, intron 52 of 56)	228673.0	NM_010656	16651.0	Mm.49689	NM_010656	ENSMUSG00000030255	Sspn	Krag	sarcospan	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91002369-4	chr16	91002251	91002451	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045515, intron 2 of 32)	intron (NM_001045515, intron 2 of 32)	8744.0	NM_001045515	104015.0	Mm.187079	NM_001045515	ENSMUSG00000022973	Synj1	A930006D20Rik|AA675315|mKIAA0910	synaptojanin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-162997447-2	chr1	162997347	162997547	+	649.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3C|LINE|L1	-12919.0	NM_008030	14262.0	Mm.2900	NM_008030	ENSMUSG00000026691	Fmo3	AW111792	flavin containing monooxygenase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44605871-2	chr9	44605771	44605971	+	745.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357703, intron 1 of 13)	intron (NM_001357703, intron 1 of 13)	979.0	NM_181324	13209.0	Mm.267061	NM_007841	ENSMUSG00000032097	Ddx6	1110001P04Rik|C430015D01Rik|E230023J21Rik|HLR2|mRCK/P54|p54|rck	DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64410890-4	chr5	64410748	64410948	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57094.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	3.29249302653676	3.68740418709354	4.02605156202224	1.85584872354254	3.31982448341548	3.47794704323078	2.96433356492069	2.29356640077238	-0.548388011020209	0.437910755107096	0.908612234382228
Merged-chr12-86147462-3	chr12	86147360	86147560	+	947.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029601, intron 4 of 7)	L2b|LINE|L2	-21881.0	NR_046081	328136.0	Mm.312050	NR_046081	ENSMUSG00000097543	Gm805	-	predicted gene 805	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-126751692-1	chr3	126751592	126751792	+	541.0	f1_c57bl6.idr	intron (NM_001025438, intron 4 of 18)	L2b|LINE|L2	154741.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	1.5538455894547	1.1514843312459	1.69970672007062	1.83907472872766	1.97045359055592	0.923312517802273	0.907283326162384	1.09755767796773	-0.850094066268293	0.515679723975295	0.947402641287243
Merged-chr18-12760912-4	chr18	12760805	12761005	+	864.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252490, intron 10 of 13)	intron (NM_001252490, intron 10 of 13)	19550.0	NM_027687	71132.0	Mm.179740	NM_027687	ENSMUSG00000024430	Cabyr	1700016C01Rik|4933421A18Rik|CBP86|FSP-2	calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-48467055-4	chr9	48466945	48467145	+	824.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	12701.0	NR_026561	667933.0	Mm.491076	NR_026561		Gm8884	EG667933	predicted gene 8884	ncRNA	0.342640447291958	0.392265855761885	0.376585102177868	1.1026365544184	1.144322274367	0.395730440873577	0.380088563150578	2.08483981726237	2.35787035864266	0.433762708707148	0.905933325821346
Merged-chr10-59879042-4	chr10	59878925	59879125	+	948.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019965)	promoter-TSS (NM_019965)	-566.0	NM_019965	56709.0	Mm.103610	NM_019965	ENSMUSG00000020109	Dnajb12	Dj10|mDj10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-4111929-3	chr10	4111845	4112045	+	989.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170785, intron 26 of 27)	intron (NM_001170785, intron 26 of 27)	101175.0	NR_152620	102632515.0	Mm.416995	NR_152620	ENSMUSG00000111266	Gm30570	-	predicted gene, 30570	ncRNA	-0.229057875572434	-0.489195477216108	-0.493241855997425	-0.496364853550207	-0.350865982167092	0.256866405564613	-0.492349260148364	-0.495819203169436	1.90832582304385	0.459997086729337	1
Merged-chr4-145215525-4	chr4	145215427	145215627	+	954.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011610, exon 10 of 10)	3' UTR (NM_011610, exon 10 of 10)	-20522.0	NM_001276465	230895.0	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-72494673-1	chr16	72494573	72494773	+	713.0	f1_c57bl6.idr	Intergenic	Intergenic	-168476.0	NM_019413	19876.0	Mm.310772	NM_019413	ENSMUSG00000022883	Robo1	AW494633|AW742721|DUTT1|Gm310	roundabout guidance receptor 1	protein-coding	-0.00484113238348829	0.751400724262194	0.00724570989419082	0.550719354487167	0.391276418893968	0.0144297313690059	0.00854044837880547	0.00350341038453167	-1.90733679296892	0.395275137862709	1
Merged-chr14-45676823-4	chr14	45676724	45676924	+	846.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A0|LTR|ERVL-MaLR	-18681.0	NM_001042719	114874.0	Mm.121918	NM_176845	ENSMUSG00000037697	Ddhd1	Mir5131|PA-PLA1	DDHD domain containing 1	protein-coding	4.19328269301957	4.2435403666863	4.16734312173047	3.32093053917518	3.34952985708358	4.07869982420039	4.3568122863808	3.68695716445355	-0.15870047774489	0.744122243251996	0.998431161219273
Merged-chr18-60596181-4	chr18	60596101	60596301	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177340, exon 3 of 3)	exon (NM_177340, exon 3 of 3)	-4485.0	NM_133363	170947.0	Mm.159257	NM_133363	ENSMUSG00000049173	Myoz3	4833419K08Rik|Fatz-3	myozenin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-24316737-4	chr7	24316627	24316827	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199321)	promoter-TSS (NM_001199321)	-61.0	NM_001199321	22756.0	Mm.295762	NM_009568	ENSMUSG00000074282	Zfp94	-	zinc finger protein 94	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-126918678-1	chr3	126918578	126918778	+	635.0	f1_balb.idr	Intergenic	B4A|SINE|B4	24708.0	NM_001034168	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	-1.18222045008182	-0.978438292940914	-1.16770109385923	-1.17699121268927	-1.18171183814936	-0.648785584566264	-1.16514082719289	-1.17532828586041	1.59252109794841	0.622914666369258	1
Merged-chr9-106319309-3	chr9	106319211	106319411	+	710.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027354, intron 9 of 10)	intron (NM_027354, intron 9 of 10)	38250.0	NM_027354	70235.0	Mm.23054	NM_027354	ENSMUSG00000023345	Poc1a	2510040D07Rik|Wdr51a|cha	POC1 centriolar protein A	protein-coding	1.71501640655677	0.655457526386865	0.88007625267147	2.17277880406895	0.604609055609173	0.65926966093336	1.25568972261552	0.857470343818453	-2.38102045673914	0.110721386341814	0.520954977776112
Merged-chr6-129402637-4	chr6	129402542	129402742	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019985, intron 4 of 5)	intron (NM_019985, intron 4 of 5)	5345.0	NM_001204239	56760.0	Mm.30700	NM_019985	ENSMUSG00000030159	Clec1b	1810061I13Rik|Clec-2|Clec2	C-type lectin domain family 1, member b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-37286894-4	chr17	37286807	37287007	+	910.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-6489.0	NM_146515	258508.0	Mm.377544	NM_146515	ENSMUSG00000061972	Olfr99	MOR156-1	olfactory receptor 99	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-44027465-3	chr17	44027376	44027576	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357742, intron 4 of 4)	intron (NM_001357742, intron 4 of 4)	-51326.0	NM_001168620	83965.0	Mm.30145	NM_032003	ENSMUSG00000023960	Enpp5	AW061004|D17Abb1e|E-NPP 5	ectonucleotide pyrophosphatase/phosphodiesterase 5	protein-coding	3.51823630099686	3.9905938662252	2.78216903278259	2.84138523324765	5.53160179177887	6.01400609239467	4.67802609598522	5.34574984521339	2.6419977649847	2.93250592705815e-09	4.18859596581473e-07
Merged-chr4-154943907-1	chr4	154943807	154944007	+	546.0	f0_c57.idr	Intergenic	Intergenic	-15830.0	NM_178931	230979.0	Mm.215147	NM_178931	ENSMUSG00000042333	Tnfrsf14	Atar|HveA|Hvem|Tnfrs14	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	protein-coding	1.45442058505588	1.3415749362866	1.98332307344193	2.21745874527394	2.60505670991584	3.23473470244269	2.9135897437431	2.22961582520408	2.25148173305912	0.0122640247105114	0.125763904680953
Merged-chr8-11466283-3	chr8	11466185	11466385	+	947.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011227, intron 1 of 1)	intron (NM_011227, intron 1 of 1)	-11644.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-85625034-1	chr1	85624934	85625134	+	1000.0	f1_balb.idr	intron (NM_001013817, intron 7 of 16)	intron (NM_001013817, intron 7 of 16)	-21143.0	NM_175397	109032.0	Mm.335802	NM_030194	ENSMUSG00000070034	Sp110	5031415C07Rik|52kDa|5830484A20Rik|Ifi75|Ipr1	Sp110 nuclear body protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-27283051-2	chr3	27282951	27283151	+	785.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34026.0	NM_009425	22035.0	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-149729005-4	chr4	149728915	149729115	+	905.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001284270, intron 4 of 10)	intron (NM_001284270, intron 4 of 10)	8755.0	NM_001284273	230917.0	Mm.266704	NM_177672	ENSMUSG00000044700	Tmem201	AV028368|D4Ertd429e|Net5|Samp1	transmembrane protein 201	protein-coding	0.831345212958558	0.291136369479861	1.5096134863649	0.272898477832825	0.946753790161347	0.293417729472741	0.283180988748442	0.274306145230485	-1.68402252178531	0.383742060098932	1
Merged-chr1-171233130-4	chr1	171233023	171233223	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010185, intron 1 of 4)	MIR|SINE|MIR	1226.0	NM_010185	14127.0	Mm.22673	NM_010185	ENSMUSG00000058715	Fcer1g	AI573376|CD23|FcR-gamma|FcR[g]|FcRgamma|Fce1g|FcepsilonRI|Ly-50	Fc receptor, IgE, high affinity I, gamma polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-102313366-3	chr7	102313276	102313476	+	629.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009287, intron 1 of 11)	intron (NM_009287, intron 1 of 11)	45552.0	NM_009287	20866.0	Mm.645	NM_009287	ENSMUSG00000030987	Stim1	SIM	stromal interaction molecule 1	protein-coding	1.16467712630972	0.965934455444024	0.571441664338131	1.50565215777967	0.853738321181547	0.583711251128848	0.573661263096055	1.03542094682744	-1.58287890976291	0.319452568389727	0.821951596143819
Merged-chr7-141440137-2	chr7	141440037	141440237	+	757.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_001360523, exon 11 of 16)	exon (NM_001360523, exon 11 of 16)	-2263.0	NM_001360724	68267.0	Mm.33729	NM_026646	ENSMUSG00000019082	Slc25a22	1300006L01Rik|AI060884|Gc1	solute carrier family 25 (mitochondrial carrier, glutamate), member 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-102754023-4	chr2	102753900	102754100	+	850.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077514, intron 6 of 10)	intron (NM_001077514, intron 6 of 10)	-7240.0	NR_153853	102637542.0	Mm.371582	NR_153852		Gm13872	-	predicted gene 13872	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-66880791-1	chr9	66880691	66880891	+	574.0	f0_balb.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	38914.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-87021953-4	chr9	87021861	87022061	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024195)	promoter-TSS (NM_024195)	-68.0	NM_024195	266690.0	Mm.30166	NM_024195	ENSMUSG00000032872	Cyb5r4	2810034J18Rik|B5+B5R|C79736|Cb5cb5r|Ncb5or|b5/b5r|b5b5r	cytochrome b5 reductase 4	protein-coding	6.76200833589584	7.07480009301883	6.38102800162791	6.89044260067157	6.80225183438019	7.25396672089843	6.75769895576557	6.91591236735975	0.153560314216367	0.43693880840384	0.908362185228875
Merged-chr9-21917735-2	chr9	21917635	21917835	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_031874, intron 1 of 4)	intron (NM_031874, intron 1 of 4)	448.0	NM_031874	19340.0	Mm.260157	NM_031874	ENSMUSG00000019066	Rab3d	C130057E11Rik	RAB3D, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-54437078-2	chr11	54436978	54437178	+	801.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-1101.0	NM_173753	216742.0	Mm.34087	NM_173753	ENSMUSG00000035992	Fnip1	A730024A03Rik|AI838773|AW557298	folliculin interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-44345560-3	chr17	44345458	44345658	+	761.116699	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	156986.0	NM_172621	224796.0	Mm.37666	NM_172621	ENSMUSG00000023959	Clic5	5730531E12Rik|B330005L24|Gm322|jbg|nmf318	chloride intracellular channel 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-22357612-4	chr4	22357511	22357711	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_104378)	promoter-TSS (NR_104378)	68.0	NR_104380	269514.0	Mm.40708	NM_172988	ENSMUSG00000040410	Fbxl4	AI836810|FBL4|FBL5	F-box and leucine-rich repeat protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-70078474-2	chr10	70078374	70078574	+	638.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-18647.0	NM_001111121	76551.0	Mm.281741	NM_001111121	ENSMUSG00000048701	Ccdc6	2810012H18Rik|AA536681|AA960498|AW061011	coiled-coil domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107963864-4	chr9	107963777	107963977	+	796.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011634, intron 10 of 14)	B1_Mur4|SINE|Alu	-11690.0	NM_023738	74153.0	Mm.277125	NM_023738	ENSMUSG00000032596	Uba7	1300004C08Rik|Ube1l	ubiquitin-like modifier activating enzyme 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35736620-3	chr17	35736490	35736690	+	989.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-31991.0	NM_007584	12305.0	Mm.5021	NM_007584	ENSMUSG00000003534	Ddr1	6030432F18|AI323681|CD167a|Cak|Nep|PTK3A	discoidin domain receptor family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-145271203-1	chr7	145271103	145271303	+	970.75	f1_c57bl6.idr	intron (NR_132643, intron 7 of 22)	intron (NR_132643, intron 7 of 22)	12808.0	NR_132644	233979.0	Mm.102235	NM_146206	ENSMUSG00000048677	Tpcn2	D830047E22Rik|Gm35086	two pore segment channel 2	protein-coding	2.84791432514142	3.04605045717699	1.3667604849919	3.12844813432638	1.8930555057267	2.29754527155765	2.21836230947248	1.99188163061926	-1.38812673328479	0.115254279189725	0.531964895394323
Merged-chr9-21495494-2	chr9	21495394	21495594	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357721, intron 14 of 19)	intron (NM_001357721, intron 14 of 19)	1070.0	NR_029585	387194.0		NR_029585	ENSMUSG00000065547	Mir199a-1	Mirn199|Mirn199a-1|mir-199a-1	microRNA 199a-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71404056-1	chr8	71403956	71404156	+	589.0	f1_balb.idr	intron (NM_026636, intron 8 of 8)	intron (NM_026636, intron 8 of 8)	-1956.0	NM_001310502	234396.0	Mm.216549	NM_172756	ENSMUSG00000046295	Ankle1	8430438L13Rik|Ankrd41|C430003I23|Lem3	ankyrin repeat and LEM domain containing 1	protein-coding	-0.865326703316383	-0.849971874135937	0.280665258210813	-0.858864759381203	-0.86435674098481	-0.848731039658829	-0.853951331253819	-0.858192605091486	-3.66751939073779	0.204629335831286	1
Merged-chr15-56695617-3	chr15	56695492	56695692	+	754.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1046.0	NM_008216	15117.0	Mm.5148	NM_008216	ENSMUSG00000022367	Has2	-	hyaluronan synthase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-98406774-2	chr12	98406674	98406874	+	563.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-117070.0	NR_136759	105245437.0	Mm.446375	NR_136759	ENSMUSG00000113613	Gm40893	-	predicted gene, 40893	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83101543-4	chr6	83101470	83101670	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081266)	promoter-TSS (NM_001081266)	54.0	NM_001081266	243510.0	Mm.436553	NM_001081266	ENSMUSG00000107499	Ccdc142	A230058J24Rik	coiled-coil domain containing 142	protein-coding	4.05116766348431	4.34276684059397	4.47460384569618	4.14904870272805	4.7193494798601	4.17546108118921	4.55456510044673	3.77170139240654	0.130741482805704	0.753912277672606	0.998431161219273
Merged-chr2-32854462-3	chr2	32854408	32854608	+	724.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7271.0	NM_001113569	20910.0	Mm.278865	NM_009295	ENSMUSG00000026797	Stxbp1	AI317162|AI326233|MMS10-G|Ms10g|Munc-18a|Munc18-1|N-sec1|Rb-sec1|Sxtbp1|Unc18-1|Unc18h|nsec1	syntaxin binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-17808524-2	chr16	17808424	17808624	+	714.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_153790)	TTS (NM_153790)	11242.0	NM_153790	224024.0	Mm.194950	NM_153790	ENSMUSG00000012017	Scarf2	NSR1|SREC-II|SRECRP-1|Scatf1|Srec2|SrecII	scavenger receptor class F, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76670628-2	chr15	76670528	76670728	+	596.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007989)	promoter-TSS (NM_007989)	-680.0	NM_007989	14106.0	Mm.42011	NM_007989	ENSMUSG00000033837	Foxh1	Fast1|Fast2|fast-1|fast-2	forkhead box H1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-69903270-4	chr8	69903097	69903297	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023312)	promoter-TSS (NM_023312)	-639.0	NM_023312	67184.0	Mm.21162	NM_023312	ENSMUSG00000036199	Ndufa13	2700054G14Rik|AU022060|CDA016|CGI-39|GRIM-19|Grim19	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 13	protein-coding	3.72182199621638	3.68693013604629	4.90743616829773	5.36506929993807	3.93951616045771	3.49914343805925	2.97317570159466	5.08864015951646	-0.63024545989861	0.266409966065997	0.769225117806794
Merged-chr12-40565015-4	chr12	40564919	40565119	+	858.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	118966.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72161905-4	chr6	72161773	72161973	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-38676.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-107613173-2	chr3	107613073	107613273	+	768.833374	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_153563, exon 21 of 21)	3' UTR (NM_153563, exon 21 of 21)	18142.0	NM_007441	11694.0	Mm.10112	NM_007441	ENSMUSG00000014603	Alx3	-	aristaless-like homeobox 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-58923291-4	chr2	58923186	58923386	+	979.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362394, intron 10 of 13)	RMER19C|LTR|ERVK	168102.0	NM_029692	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-12283764-2	chr14	12283664	12283864	+	596.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146051)	promoter-TSS (NM_146051)	-439.0	NM_001284384	218734.0	Mm.44068	NM_146051	ENSMUSG00000033111	3830406C13Rik	-	RIKEN cDNA 3830406C13 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-132599295-4	chr2	132599166	132599366	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033469, intron 1 of 3)	intron (NR_033469, intron 1 of 3)	1070.0	NR_033469	767814.0	Mm.371752	NR_033468	ENSMUSG00000074783	AU019990	-	expressed sequence AU019990	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-82441803-1	chr12	82441703	82441903	+	543.0	f0_balb.idr	intron (NM_001167983, intron 21 of 23)	RLTR31D_MM|LTR|ERVK	130454.0	NM_172579	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-96967059-4	chr11	96966978	96967178	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030220, intron 1 of 6)	intron (NM_030220, intron 1 of 6)	10610.0	NM_030220	78912.0	Mm.491183	NM_030220	ENSMUSG00000018678	Sp2	4930480I16Rik|mKIAA0048	Sp2 transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-87512468-2	chr17	87512368	87512568	+	683.099976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65533.0	NM_007589	12314.0	Mm.329243	NM_007589	ENSMUSG00000036438	Calm2	1500001E21Rik|AL024017|Cam2|CamC	calmodulin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-155052307-2	chr1	155052207	155052407	+	851.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30957.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-73537877-4	chr7	73537780	73537980	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081345, intron 2 of 38)	CpG	3866.0	NM_001081345	244059.0	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-8995667-4	chr15	8995570	8995770	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198024, intron 1 of 13)	intron (NM_198024, intron 1 of 13)	27721.0	NM_198024	223332.0	Mm.321371	NM_198024	ENSMUSG00000048424	Ranbp3l	C130037N17Rik	RAN binding protein 3-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-8609209-2	chr4	8609109	8609309	+	724.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	73565.0	NM_021518	59021.0	Mm.397471	NM_021518	ENSMUSG00000047187	Rab2a	9330148M11Rik|C80220|Rab2	RAB2A, member RAS oncogene family	protein-coding	0.811574430180245	0.949290517848221	0.449841342423389	0.870508483793163	0.435837243452715	0.959130650202612	0.451496176569764	0.876604257132159	-0.442686377317284	0.794381011584635	1
Merged-chr19-4928335-4	chr19	4928238	4928438	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133803)	promoter-TSS (NM_133803)	-51.0	NM_133803	75221.0	Mm.234769	NM_133803	ENSMUSG00000063904	Dpp3	4930533O14Rik|C86324|DPP III	dipeptidylpeptidase 3	protein-coding	2.98281678085925	2.69384365654291	4.079617409307	2.76748870257991	2.64215424596414	3.19000785175969	2.75360592648851	2.03321932034528	-0.970283508790061	0.175647057244159	0.645775639984829
Merged-chr11-8594778-4	chr11	8594685	8594885	+	975.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 3 of 30)	URR1A|DNA|hAT-Charlie	69750.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-58261784-4	chr15	58261667	58261867	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA4A|LINE|L1	-46875.0	NM_026346	67731.0	Mm.25683	NM_026346	ENSMUSG00000022358	Fbxo32	4833442G10Rik|AI430017|ATROGIN1|Gm20361|MAFbx	F-box protein 32	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52654638-2	chr13	52654538	52654738	+	799.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57756.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-3962194-4	chr7	3962088	3962288	+	895.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46687.0	NR_028115	18726.0	Mm.440989	NM_011090	ENSMUSG00000030427	Lilra6	7M1|Pira3	leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-45408531-4	chr9	45408427	45408627	+	830.383301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_052823, intron 3 of 5)	intron (NM_052823, intron 3 of 5)	2450.0	NM_007503	11936.0	Mm.22742	NM_007503	ENSMUSG00000059412	Fxyd2	Atp1g1	FXYD domain-containing ion transport regulator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-77266425-4	chr10	77266324	77266524	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030262, intron 6 of 8)	intron (NM_030262, intron 6 of 8)	7124.0	NM_030262	80294.0	Mm.203556	NM_030262	ENSMUSG00000020260	Pofut2	2310011G23Rik|AI256847|BC003494|C21orf80|FUT13	protein O-fucosyltransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-121754062-2	chr11	121753962	121754162	+	677.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51635.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-37229287-2	chr10	37229187	37229387	+	936.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-90361.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-100588915-2	chr13	100588815	100589015	+	596.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	28029.0	NM_178410	218518.0	Mm.25300	NM_178410	ENSMUSG00000021636	Marveld2	BC003296|MARVD2|Mrvldc2|Tric|Trica|Tricb|Tricc	MARVEL (membrane-associating) domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-6542339-4	chr6	6542234	6542434	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1C|Other|Other	36324.0	NM_009169	20422.0	Mm.2469	NM_009169	ENSMUSG00000042541	Sem1	DSS1|Shfdg1|Shfg|Shfm1	SEM1, 26S proteasome complex subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-17837920-4	chr6	17837838	17838038	+	897.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022332, intron 3 of 15)	intron (NM_022332, intron 3 of 15)	88768.0	NM_001083315	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-17842966-3	chr6	17842871	17843071	+	782.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022332, intron 3 of 15)	intron (NM_022332, intron 3 of 15)	93801.0	NM_001083315	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33755520-4	chr16	33755418	33755618	+	937.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175256, intron 12 of 14)	intron (NM_175256, intron 12 of 14)	-38519.0	NM_010739	17063.0	Mm.3177	NM_010739	ENSMUSG00000022824	Muc13	114/A10|14/A10|AI159736|Lrrp|Ly64|NJ-1	mucin 13, epithelial transmembrane	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-81670261-6	chr17	81670104	81670304	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 1 of 8)	CpG	68183.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-106058756-4	chr8	106058621	106058821	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010901)	promoter-TSS (NM_010901)	-882.0	NM_010901	18021.0	Mm.383185	NM_010901	ENSMUSG00000031902	Nfatc3	C80703|D8Ertd281e|NFAT4|NFATx	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-35737030-1	chr7	35736930	35737130	+	654.5	f0_balb.idr	intron (NM_178704, intron 3 of 18)	intron (NM_178704, intron 3 of 18)	17424.0	NM_178704	233115.0	Mm.257808	NM_178704	ENSMUSG00000043671	Dpy19l3	6030410G08|9330164H19Rik	dpy-19-like 3 (C. elegans)	protein-coding	0.137597492369822	0.58542871089367	0.156845426791509	0.149686020094282	0.817346831942174	1.31509968662532	0.158875954969116	0.150943193085778	2.72356495730019	0.186365440824498	1
Merged-chr1-167393822-4	chr1	167393704	167393904	+	969.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025569)	promoter-TSS (NM_025569)	-7.0	NM_025569	66447.0	Mm.218286	NM_025569	ENSMUSG00000026688	Mgst3	2010012L10Rik|2010306B17Rik|2700004G04Rik|AA516734|GST-III	microsomal glutathione S-transferase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-53567394-2	chr19	53567294	53567494	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER4A|LTR|ERVK	-33002.0	NM_007790	13006.0	Mm.14910	NM_007790	ENSMUSG00000024974	Smc3	Bamacan|Cspg6|HCAP|Mmip1|SMC-3|SmcD	structural maintenance of chromosomes 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-19574099-2	chr4	19573999	19574199	+	848.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025476)	promoter-TSS (NM_025476)	-967.0	NM_025476	66302.0	Mm.440686	NM_025476	ENSMUSG00000028229	Rmdn1	Fam82b|RMD-1	regulator of microtubule dynamics 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-127242999-4	chr1	127242913	127243113	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145128, intron 1 of 17)	intron (NM_145128, intron 1 of 17)	38027.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-74830011-4	chr11	74829914	74830114	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010813)	promoter-TSS (NM_010813)	-910.0	NM_010813	17428.0	Mm.3759	NM_010813	ENSMUSG00000000282	Mnt	Rox|bHLHd3	max binding protein	protein-coding	4.0990412788467	3.68528066125326	3.03187711626509	3.37171800812101	3.66697206878097	4.02468491116426	3.67358732935599	4.48143948401697	0.558618313352781	0.276493230674086	0.780801611869062
Merged-chr5-93268163-4	chr5	93268051	93268251	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007635, intron 1 of 7)	CpG	578.0	NM_007635	12452.0	Mm.3527	NM_007635	ENSMUSG00000029385	Ccng2	-	cyclin G2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-98959504-3	chr6	98959410	98959610	+	966.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001197321, intron 10 of 17)	intron (NM_001197321, intron 10 of 17)	68788.0	NM_001197322	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-5349678-1	chr5	5349578	5349778	+	642.0	f1_c57bl6.idr	intron (NM_011074, intron 2 of 14)	MERVL-int|LTR|ERVL	30573.0	NM_011074	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-74535621-4	chr5	74535530	74535730	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001159574, exon 1 of 16)	5' UTR (NM_001159574, exon 1 of 16)	148.0	NM_001159574	66899.0	Mm.272468	NM_024183	ENSMUSG00000029227	Fip1l1	1300019H17Rik|Rje	FIP1 like 1 (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-36224781-4	chr2	36224698	36224898	+	933.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J2|LTR|ERVL-MaLR	-5628.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-118544409-2	chr2	118544307	118544507	+	947.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_138603, exon 1 of 2)	non-coding (NR_138603, exon 1 of 2)	180.0	NR_138603	171543.0	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98915066-2	chr11	98914966	98915166	+	715.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025779, intron 7 of 11)	intron (NM_001025779, intron 7 of 11)	6915.0	NM_011799	23834.0	Mm.20912	NM_011799	ENSMUSG00000017499	Cdc6	CDC18L	cell division cycle 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80930572-4	chr10	80930478	80930678	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008655, intron 2 of 3)	CpG-1325	487.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-55640664-4	chr13	55640568	55640768	+	866.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001282055, intron 3 of 22)	B3A|SINE|B2	5669.0	NM_001282055	212880.0	Mm.202725	NM_145975	ENSMUSG00000021500	Ddx46	2200005K02Rik|8430438J23Rik|AI325430|AI957095|mKIAA0801	DEAD (Asp-Glu-Ala-Asp) box polypeptide 46	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19604479-4	chr7	19604379	19604579	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_125835)	promoter-TSS (NR_125835)	7.0	NR_125832	53609.0	Mm.20913	NM_016680	ENSMUSG00000061028	Clasrp	Clasp|Sfrs16|Srsf16|Swap2	CLK4-associating serine/arginine rich protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-66497321-4	chr8	66497198	66497398	+	671.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR55|LTR|ERVL?	-10768.0	NM_001357208	66282.0	Mm.294985	NM_025465	ENSMUSG00000025591	Tma16	1810029B16Rik	translation machinery associated 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26202985-2	chr17	26202885	26203085	+	821.166687	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081069)	promoter-TSS (NM_001081069)	44.0	NM_001081069	50782.0	Mm.109840	NM_001081069	ENSMUSG00000024186	Rgs11	C78048	regulator of G-protein signaling 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-103649158-4	chr6	103649040	103649240	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007697, intron 4 of 26)	SYNREP_MM|Satellite|Satellite	138264.0	NM_007697	12661.0	Mm.251288	NM_007697	ENSMUSG00000030077	Chl1	A530023M13Rik|AI465420|CALL|LICAM2	cell adhesion molecule L1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96704885-2	chr3	96704785	96704985	+	714.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_146135, exon 14 of 14)	exon (NM_146135, exon 14 of 14)	3675.0	NM_001162925	78373.0	Mm.423186	NM_030094	ENSMUSG00000028100	Nudt17	2410015C20Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-102233045-4	chr7	102232927	102233127	+	864.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_111937, intron 2 of 5)	B2_Mm2|SINE|B2	9999.0	NR_111937	233575.0	Mm.302013	NM_145583	ENSMUSG00000030990	Pgap2	1810006G21Rik|C76649|Frag1	post-GPI attachment to proteins 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83005011-4	chr6	83004879	83005079	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033079, intron 5 of 9)	intron (NM_033079, intron 5 of 9)	28492.0	NM_010070	13448.0	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	4.86243644611997	5.66834975334756	4.76120076394759	5.43277636986919	5.13262347945241	5.07867174683512	5.0830684465274	4.10481694922166	-0.378787471797744	0.291744991729709	0.796128548904676
Merged-chr19-46659087-2	chr19	46658987	46659187	+	869.416626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13913.0	NM_007809	13074.0	Mm.1262	NM_007809	ENSMUSG00000003555	Cyp17a1	Cyp17|p450c17	cytochrome P450, family 17, subfamily a, polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-55238322-4	chr18	55238206	55238406	+	954.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-245715.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-95563003-2	chr10	95562903	95563103	+	715.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358996, intron 1 of 4)	intron (NM_001358996, intron 1 of 4)	1143.0	NM_027722	71207.0	Mm.24397	NM_027722	ENSMUSG00000020029	Nudt4	4933436C10Rik|DIPP-2|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P	nudix (nucleoside diphosphate linked moiety X)-type motif 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-26359715-2	chr2	26359615	26359815	+	614.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001037747)	promoter-TSS (NM_001037747)	-168.0	NM_001037747	332579.0	Mm.330064	NM_001037747	ENSMUSG00000026928	Card9	Gm782	caspase recruitment domain family, member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-6302571-2	chr4	6302435	6302635	+	659.766663	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	-26904.0	NM_007824	13122.0	Mm.57029	NM_007824	ENSMUSG00000028240	Cyp7a1	-	cytochrome P450, family 7, subfamily a, polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-145197409-2	chr2	145197309	145197509	+	819.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356497, intron 1 of 16)	intron (NM_001356497, intron 1 of 16)	29634.0	NM_001356497	94249.0	Mm.217171	NM_053195	ENSMUSG00000063873	Slc24a3	NCKX3	solute carrier family 24 (sodium/potassium/calcium exchanger), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-5266621-4	chr5	5266513	5266713	+	842.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310448)	promoter-TSS (NM_001310448)	-545.0	NM_001310448	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	0.802894929640576	2.4653211182157	1.97651732022686	0.842640903994766	0.808994048113022	2.48642509634035	1.99527538742198	0.846661799981196	0.0402642956549305	0.986970587214967	0.998431161219273
Merged-chr11-70625665-2	chr11	70625565	70625765	+	808.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-6471.0	NM_009603	11448.0	Mm.4980	NM_009603	ENSMUSG00000014609	Chrne	AChrepsilon|Acre|nAChRE	cholinergic receptor, nicotinic, epsilon polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34685865-4	chr17	34685769	34685969	+	833.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_031176, exon 8 of 33)	exon (NM_031176, exon 8 of 33)	15334.0	NM_031176	81877.0	Mm.290527	NM_031176	ENSMUSG00000033327	Tnxb	Tn-mhc|Tnx	tenascin XB	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-9334231-3	chr3	9334210	9334410	+	650.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68768.0	NR_015499	320088.0	Mm.212908	NR_015499	ENSMUSG00000097365	C030034L19Rik	A130044O20Rik	RIKEN cDNA C030034L19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-9882030-4	chr10	9881922	9882122	+	977.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081344, intron 2 of 25)	MTB_Mm|LTR|ERVL-MaLR	19018.0	NM_001081344	78808.0	Mm.331751	NM_030191	ENSMUSG00000019790	Stxbp5	0710001E20Rik|4930565N16Rik|AW742610|LGL3|mKIAA1006	syntaxin binding protein 5 (tomosyn)	protein-coding	-0.986117776978398	-1.33156256825259	-1.34133402424827	-1.34936058913999	-1.21427833167172	-1.32944505297573	-1.33912198079506	-1.34792383786197	-0.98711403806483	0.775821656509867	1
Merged-chr4-46591073-3	chr4	46591001	46591201	+	726.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164804, intron 1 of 11)	intron (NM_001164804, intron 1 of 11)	10828.0	NM_001164804	107684.0	Mm.416311	NM_178893	ENSMUSG00000028337	Coro2a	9030208C03Rik|AI563590|IR10	coronin, actin binding protein 2A	protein-coding	1.3714331702158	3.11382278637357	2.08799646699755	2.02237192820093	2.71642379642539	3.20714766328149	1.22078582005583	1.45862183736049	0.215227780166551	0.834255105163938	0.998431161219273
Merged-chr14-60765327-3	chr14	60765246	60765446	+	742.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001310594)	TTS (NM_001310594)	-2788.0	NM_183175	239126.0	Mm.319636	NM_183175	ENSMUSG00000071347	C1qtnf9	9130217G22Rik|CTRP9|Ciqtnf9	C1q and tumor necrosis factor related protein 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-39610575-2	chr18	39610475	39610675	+	824.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-123330.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-62844662-1	chr5	62844562	62844762	+	821.666687	f0_balb.idr	intron (NM_001170705, intron 6 of 8)	intron (NM_001170705, intron 6 of 8)	30839.0	NM_001170705	100322896.0	Mm.479821	NM_001170705	ENSMUSG00000090326	Dthd1	Gm17384	death domain containing 1	protein-coding	2.07771874677798	1.77061348378004	2.13809144646634	1.96262734938049	2.18522220623092	2.44513560111541	1.89144147861132	1.68574304219235	0.245064432964559	0.789945058787641	0.998431161219273
Merged-chr1-63112440-2	chr1	63112340	63112540	+	719.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114609, intron 1 of 11)	intron (NM_001114609, intron 1 of 11)	1827.0	NM_001081436	227195.0	Mm.74718	NM_001081436	ENSMUSG00000040865	Ino80d	7330405I11|A430093A21Rik|BC010584	INO80 complex subunit D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-25218201-2	chr12	25218101	25218301	+	566.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	89027.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-45571876-3	chr13	45571782	45571982	+	681.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199304, intron 5 of 6)	intron (NM_001199304, intron 5 of 6)	64438.0	NM_025508	66355.0	Mm.290802	NM_025508	ENSMUSG00000000253	Gmpr	2310004P21Rik|AV028449|GMPR 1	guanosine monophosphate reductase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46506502-4	chr19	46506407	46506607	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053100, intron 1 of 5)	intron (NM_053100, intron 1 of 5)	4859.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101146476-6	chr15	101146417	101146617	+	948.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17995.0	NM_001277257	11482.0	Mm.279542	NM_009612	ENSMUSG00000000530	Acvrl1	AI115505|AI427544|Acvrlk1|Alk1	activin A receptor, type II-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-47628302-1	chr9	47628202	47628402	+	582.333313	f0_c57.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	97950.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	1.94703212187076	2.3189733536605	2.61171881839922	2.17068392186978	1.14528293459933	1.24018953290739	2.55008211102438	1.79343385765784	-1.11911352170705	0.288110033666607	0.793815200967874
Merged-chr14-48120743-2	chr14	48120681	48120881	+	815.0	f0_balb.idr|f1_balb.idr	promoter-TSS (NM_033602)	promoter-TSS (NM_033602)	-88.0	NM_033602	93834.0	Mm.296457	NM_033602	ENSMUSG00000021846	Peli2	AW047589|BB129927	pellino 2	protein-coding	0.0669627265017463	0.0844925414591228	0.25567143631695	0.789901909408982	0.340190532102967	0.0857857151091413	0.0800197599435412	0.613295771236311	-0.279613333850741	0.892083702185757	1
Merged-chr14-17850963-6	chr14	17850808	17851008	+	998.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113417, intron 2 of 9)	MER2|DNA|TcMar-Tigger	-130736.0	NM_009380	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98201105-2	chr11	98201005	98201205	+	693.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2200.0	NM_001109628	69131.0	Mm.260516	NM_026952	ENSMUSG00000003119	Cdk12	1810022J16Rik|AI646528|Crk7|Crkrs|D11Ertd752e|Pksc	cyclin-dependent kinase 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-120572322-4	chr2	120572216	120572416	+	996.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009222, intron 1 of 7)	T-rich|Low_complexity|Low_complexity	4645.0	NM_009222	20619.0	Mm.245715	NM_009222	ENSMUSG00000027287	Snap23	23kDa|AA408749|SNAP-23|Sndt|Syndet	synaptosomal-associated protein 23	protein-coding	4.47759781347652	3.65537356292085	4.45755737830157	4.9409300317938	4.69028130505351	3.68394416292641	4.49006583447051	4.93028001985397	0.0845902488933559	0.845662165110178	0.998431161219273
Merged-chr1-138940602-4	chr1	138940502	138940702	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA8|LINE|L1	-23107.0	NM_001166501	329260.0	Mm.337604	NM_181347	ENSMUSG00000056268	Dennd1b	4632404N19Rik|4930467M19Rik|6820401H01Rik|F730008N07Rik	DENN/MADD domain containing 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-154032834-4	chr1	154032723	154032923	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	132894.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-83663770-1	chr8	83663670	83663870	+	905.0	f1_balb.idr	intron (NM_018771, intron 5 of 6)	B3|SINE|B2	-2874.0	NM_013641	19216.0	Mm.213000	NM_013641	ENSMUSG00000019464	Ptger1	EP1|Ptgerep1	prostaglandin E receptor 1 (subtype EP1)	protein-coding	1.79302922579621	1.18036930975667	0.606837873338049	0.791099210887314	1.03332986104279	0.848395288627042	0.609458566892366	0.958101615298394	-1.3912929177349	0.349350110813787	0.849973495243439
Merged-chr4-155705022-4	chr4	155704872	155705072	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_026899, exon 1 of 5)	5' UTR (NM_026899, exon 1 of 5)	157.0	NM_026899	68991.0	Mm.294770	NM_026899	ENSMUSG00000029038	Ssu72	1190002E22Rik|1500011L16Rik|2610101M12Rik	Ssu72 RNA polymerase II CTD phosphatase homolog (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-63397982-2	chr4	63397882	63398082	+	854.375	f1_balb.idr|f1_c57bl6.idr	exon (NM_001305432, exon 1 of 21)	exon (NM_001305432, exon 1 of 21)	258.0	NM_001305432	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-72600523-4	chr14	72600389	72600589	+	870.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207636, intron 3 of 25)	intron (NM_207636, intron 3 of 25)	109514.0	NM_207636	319448.0	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-93125053-2	chr1	93124953	93125153	+	642.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10187.0	NM_001276710	11611.0	Mm.7457	NM_016702	ENSMUSG00000026272	Agxt	AGT|Agt1|Agxt1|SPT	alanine-glyoxylate aminotransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-105467403-3	chr11	105467305	105467505	+	731.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10670.0	NM_001039242	632687.0	Mm.121570	NM_172568	ENSMUSG00000078627	March10	4933417C16Rik|AV039223|Rnf190	membrane-associated ring finger (C3HC4) 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-7888117-2	chr10	7888018	7888218	+	569.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51737.0	NR_039563	100628581.0		NR_039563	ENSMUSG00000093060	Mir5104	mir-5104|mmu-mir-5104|mu-mir-5104	microRNA 5104	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-43396517-2	chr11	43396417	43396617	+	634.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	-22056.0	NR_029558	387164.0		NR_029558	ENSMUSG00000065601	Mir146	Mirn146|miR-146a|mmu-mir-146	microRNA 146	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-116000291-4	chr13	116000193	116000393	+	995.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	309395.0	NM_021459	16392.0	Mm.42242	NM_021459	ENSMUSG00000042258	Isl1	-	ISL1 transcription factor, LIM/homeodomain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-113285137-4	chr6	113285043	113285243	+	981.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_170673, intron 6 of 19)	intron (NM_170673, intron 6 of 19)	2836.0	NM_170673	211232.0	Mm.65597	NM_170673	ENSMUSG00000030270	Cpne9	A730016F12Rik|mKIAA4217	copine family member IX	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-181582598-2	chr2	181582498	181582698	+	617.833313	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026765)	promoter-TSS (NM_026765)	-625.0	NM_026765	68556.0	Mm.232400	NM_026765	ENSMUSG00000089917	Uckl1	1110007H10Rik|Urkl1	uridine-cytidine kinase 1-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-149772655-4	chr4	149772642	149772842	+	883.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027460, intron 1 of 6)	intron (NM_027460, intron 1 of 6)	1525.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	2.27761323623516	2.13771359121998	2.56544549092338	1.85706725454868	2.48033760729498	2.44152568016904	2.58487210256749	2.50813929827854	0.620236475794108	0.440355878449114	0.909403165516712
Merged-chr19-53390692-4	chr19	53390588	53390788	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356986)	promoter-TSS (NM_001356986)	-54.0	NM_172429	76479.0	Mm.313687	NM_172429	ENSMUSG00000025024	Smndc1	-	survival motor neuron domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-60178960-2	chr5	60178860	60179060	+	569.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR11C_MM|LTR|ERVK	-192958.0	NR_040682	71057.0	Mm.50817	NR_040682	ENSMUSG00000106013	4933402J10Rik	-	RIKEN cDNA 4933402J10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-86192245-2	chr15	86192145	86192345	+	916.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6104.0	NM_145475	223753.0	Mm.222685	NM_145475	ENSMUSG00000035891	Cerk	AI848610|D330016D08Rik|mKIAA1646	ceramide kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-36794379-2	chr5	36794279	36794479	+	726.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_026242)	TTS (NM_026242)	2375.0	NM_026242	67568.0	Mm.332336	NM_026242	ENSMUSG00000055302	Mrfap1	9130413I22Rik|AL022827|Pam14	Morf4 family associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-35733875-3	chr2	35733762	35733962	+	749.277771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37130.0	NM_001290639	69601.0	Mm.29629	NM_001001602	ENSMUSG00000026883	Dab2ip	2310011D08Rik|AI480459|Aip1|mKIAA1743	disabled 2 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-35462824-4	chr12	35462737	35462937	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	72152.0	NM_013464	11622.0	Mm.341377	NM_013464	ENSMUSG00000019256	Ahr	Ah|Ahh|Ahre|In|bHLHe76	aryl-hydrocarbon receptor	protein-coding	5.36806792259955	6.04102511723465	5.39218616492388	5.4851977201884	5.75632821026653	5.78888361584843	5.33306339420948	5.40101922811765	-0.008515053519766	0.975608203708554	0.998431161219273
Merged-chr17-47012842-2	chr17	47012742	47012942	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2310.0	NM_001177374	224826.0	Mm.28234	NM_146078	ENSMUSG00000023977	Ubr2	9930021A08Rik|AI462103|AW540746|E130209G04Rik|mKIAA0349	ubiquitin protein ligase E3 component n-recognin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-37342531-3	chr10	37342434	37342634	+	809.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA4|LINE|L1	-203608.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4084589-2	chr16	4084489	4084689	+	932.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001025432, exon 31 of 31)	exon (NM_001025432, exon 31 of 31)	-6779.0	NM_026508	68015.0	Mm.123366	NM_026508	ENSMUSG00000005981	Trap1	2410002K23Rik|HSP75	TNF receptor-associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-29380725-6	chr17	29380586	29380786	+	962.611084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA4|LINE|L1	19772.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	2.67083314793985	2.31990606888686	2.90029964793074	3.08197083139465	3.21996904718565	3.02428244502407	3.41456841272156	1.51603761797092	0.361166435932283	0.643119852453302	0.982823301118608
Merged-chr17-35865916-4	chr17	35865780	35865980	+	936.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175242)	promoter-TSS (NM_175242)	-248.0	NM_001146710	76448.0	Mm.359982	NM_175242	ENSMUSG00000034595	Ppp1r18	2310014H01Rik|AA407849|AI450394	protein phosphatase 1, regulatory subunit 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-60273874-4	chr14	60273786	60273986	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144843, intron 1 of 13)	intron (NM_144843, intron 1 of 13)	8681.0	NM_144843	219135.0	Mm.247007	NM_144843	ENSMUSG00000021987	Mtmr6	4022440C11Rik|AI428804|AU041072	myotubularin related protein 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-84708854-2	chr10	84708754	84708954	+	579.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027423, intron 23 of 27)	intron (NM_027423, intron 23 of 27)	-47194.0	NM_001024918	71137.0	Mm.79070	NM_027689	ENSMUSG00000020037	Rfx4	4933412G19Rik|NYD-sp10	regulatory factor X, 4 (influences HLA class II expression)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-177957300-4	chr2	177957217	177957417	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001282028)	promoter-TSS (NM_001282028)	-29.0	NM_001190302	665211.0	Mm.441314	NM_001190302	ENSMUSG00000078862	Gm14326	-	predicted gene 14326	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-39810949-4	chr6	39810853	39811053	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001010930)	promoter-TSS (NM_001010930)	-17.0	NM_001010930	14548.0	Mm.377071	NM_010270	ENSMUSG00000029918	Mrps33	AI841153|CGI-139|Gdap3|MRP-S33|PTD003	mitochondrial ribosomal protein S33	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-80852212-4	chr12	80852101	80852301	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001242419, intron 3 of 6)	intron (NM_001242419, intron 3 of 6)	61669.0	NM_001242419	217684.0	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-181304183-2	chr2	181304083	181304283	+	741.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10317.0	NM_009133	20262.0	Mm.2319	NM_009133	ENSMUSG00000027581	Stmn3	9330161A03Rik|AI604839|R75323|Sclip	stathmin-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45527865-2	chr7	45527751	45527951	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_148927, intron 1 of 19)	B3|SINE|B2	1521.0	NM_148927	69217.0	Mm.274158	NM_148927	ENSMUSG00000040428	Plekha4	2410005C22Rik|C88169|Pepp1	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-84054250-2	chr15	84054150	84054350	+	604.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029946, intron 2 of 31)	intron (NM_029946, intron 2 of 31)	11099.0	NM_029946	77627.0	Mm.196288	NM_029946	ENSMUSG00000022441	Efcab6	4931407K02Rik|4932408N08Rik|bM150J22.2|mKIAA1672	EF-hand calcium binding domain 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-74915402-2	chr15	74915302	74915502	+	544.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33698.0	NM_025929	67038.0	Mm.154566	NM_025929	ENSMUSG00000063522	2010109I03Rik	Ly6m	RIKEN cDNA 2010109I03 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-40953827-4	chr15	40953707	40953907	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356998, intron 3 of 6)	intron (NM_001356998, intron 3 of 6)	-219894.0	NR_151516	100418302.0		NR_151516		4930555K19Rik	-	leucine rich repeat and sterile alpha motif containing 1 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-16896504-4	chr16	16896412	16896612	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_176833)	promoter-TSS (NM_176833)	43.0	NM_176833	68606.0	Mm.230296	NM_176833	ENSMUSG00000026181	Ppm1f	1110021B16Rik|4933427B07Rik|CaMKPase|Popx2|mKIAA0015	protein phosphatase 1F (PP2C domain containing)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-90882673-2	chr5	90882573	90882773	+	976.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-8572.0	NM_008176	14825.0	Mm.21013	NM_008176	ENSMUSG00000029380	Cxcl1	Fsp|Gro1|KC|Mgsa|N51|Scyb1|gro	chemokine (C-X-C motif) ligand 1	protein-coding	0.320267070588854	0.152700154090361	0.140262902743764	0.130415751191449	0.116096702294444	1.75254237668894	0.393776745552769	0.719075104387554	3.9511330047995	0.0322678698766165	0.249592172419097
Merged-chr17-84625604-2	chr17	84625505	84625705	+	626.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172256)	promoter-TSS (NM_172256)	-894.0	NM_172256	213575.0	Mm.246119	NM_172256	ENSMUSG00000024253	Dync2li1	4933404O11Rik|CGI-60|D2lic|LIC3|mD2LIC	dynein cytoplasmic 2 light intermediate chain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44091318-1	chr9	44091218	44091418	+	649.0	f1_c57bl6.idr	exon (NM_016808, exon 6 of 13)	exon (NM_016808, exon 6 of 13)	6398.0	NM_198091	53376.0	Mm.272770	NM_016808	ENSMUSG00000032010	Usp2	B930035K21Rik|Ubp41	ubiquitin specific peptidase 2	protein-coding	1.38467357587509	1.1532757576083	0.472183877522455	0.804156834696472	1.08819504659947	0.484074535278953	0.474335904887869	0.465940474316476	-1.68553357696871	0.336249172169557	1
Merged-chr2-79454176-2	chr2	79454076	79454276	+	836.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_010894, exon 2 of 2)	exon (NM_010894, exon 2 of 2)	2460.0	NM_010894	18012.0	Mm.4636	NM_010894	ENSMUSG00000034701	Neurod1	BETA2|BHF-1|Nd1|Neurod|bHLHa3	neurogenic differentiation 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97744070-5	chr11	97744025	97744225	+	802.366638	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_106180)	promoter-TSS (NR_106180)	579.0	NM_054051	108083.0	Mm.39700	NM_054051	ENSMUSG00000018547	Pip4k2b	AI848124|PI5P4Kbeta|Pip5k2b|c11	phosphatidylinositol-5-phosphate 4-kinase, type II, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167756158-2	chr2	167756058	167756258	+	781.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	64981.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-60362335-2	chr6	60362235	60362435	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_015565, intron 1 of 1)	RLTR50B|LTR|ERVK	41372.0	NR_015565	208079.0	Mm.131226	NM_177329	ENSMUSG00000046764	A530053G22Rik	-	RIKEN cDNA A530053G22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-82565415-2	chr18	82565315	82565515	+	714.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025251, intron 2 of 6)	intron (NM_001025251, intron 2 of 6)	10907.0	NM_001025254	17196.0	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-54092398-3	chr11	54092293	54092493	+	964.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8531.0	NM_001136076	18452.0	Mm.3705	NM_011031	ENSMUSG00000018906	P4ha2	AA407196|C76437|P4hl	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97556650-2	chr11	97556550	97556750	+	583.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_018873, intron 1 of 19)	intron (NM_018873, intron 1 of 19)	18476.0	NM_018873	56013.0	Mm.342665	NM_018873	ENSMUSG00000038453	Srcin1	P140|SNIP|mKIAA1684|p140Cap	SRC kinase signaling inhibitor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-48413616-2	chr2	48413516	48413716	+	626.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-400493.0	NM_007396	11480.0	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-126202832-4	chr4	126202736	126202936	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146153)	promoter-TSS (NM_146153)	-126.0	NM_146153	230753.0	Mm.29813	NM_146153	ENSMUSG00000043962	Thrap3	9330151F09Rik|B230333E16Rik|Trap150	thyroid hormone receptor associated protein 3	protein-coding	6.79705886500071	6.90332637532016	6.45486994123597	6.82592575126889	5.34182743719009	5.69639239956871	3.57778283581402	4.28232509437416	-1.98342245578061	0.000140545867917747	0.00406003849906212
Merged-chr11-17460122-2	chr11	17460022	17460222	+	620.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	202434.0	NM_001330649	57316.0	Mm.287982	NM_020558	ENSMUSG00000000581	C1d	1110036E10Rik|AI875855|SUN-CoR	C1D nuclear receptor co-repressor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-32281590-2	chr17	32281490	32281690	+	648.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286630, intron 1 of 19)	B3A|SINE|B2	2533.0	NM_198094	57261.0	Mm.253518	NM_020508	ENSMUSG00000024002	Brd4	Brd5|HUNK1|MCAP|WI-11513	bromodomain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-87474434-3	chr17	87474316	87474516	+	904.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27481.0	NM_007589	12314.0	Mm.329243	NM_007589	ENSMUSG00000036438	Calm2	1500001E21Rik|AL024017|Cam2|CamC	calmodulin 2	protein-coding	1.78815729289925	2.45382522084626	2.57966336622309	2.04158330252919	1.63673842032145	1.320599793043	3.25003653400724	2.30886281031475	0.260424695679266	0.787580884805558	0.998431161219273
Merged-chr5-117933012-4	chr5	117932885	117933085	+	901.0166630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008712, intron 19 of 27)	intron (NM_008712, intron 19 of 27)	-43785.0	NM_145564	231670.0	Mm.21912	NM_145564	ENSMUSG00000032898	Fbxo21	2810425J22Rik|AU016673	F-box protein 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-164952810-2	chr2	164952710	164952910	+	985.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_013599, intron 9 of 12)	intron (NM_013599, intron 9 of 12)	4591.0	NM_013599	17395.0	Mm.4406	NM_013599	ENSMUSG00000017737	Mmp9	AW743869|B/MMP9|Clg4b|Gel B|MMP-9|pro-MMP-9	matrix metallopeptidase 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-113062461-3	chr6	113062353	113062553	+	684.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008188, intron 5 of 9)	intron (NM_008188, intron 5 of 9)	14791.0	NR_027010	14910.0	Mm.280950	NR_027008	ENSMUSG00000086429	Gt(ROSA)26Sor	AV258896|Gtrgeo26|Gtrosa26|R26|ROSA26|Thumpd3as1	gene trap ROSA 26, Philippe Soriano	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-66804717-3	chr15	66804619	66804819	+	689.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029841, intron 1 of 7)	intron (NM_001029841, intron 1 of 7)	27110.0	NM_001029841	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-114563771-2	chr7	114563671	114563871	+	991.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177382)	promoter-TSS (NM_177382)	-799.0	NM_177382	244209.0	Mm.108037	NM_177382	ENSMUSG00000030670	Cyp2r1	-	cytochrome P450, family 2, subfamily r, polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-33821168-6	chr5	33821047	33821247	+	873.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-21965.0	NM_175231	107823.0	Mm.19892	NM_175231	ENSMUSG00000057406	Nsd2	5830445G22Rik|9430010A17Rik|AW555663|C130020C13Rik|D030027O06Rik|D930023B08Rik|MMSET|Whsc1|Whsc1l|mKIAA1090	nuclear receptor binding SET domain protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-46640124-4	chr17	46640014	46640214	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357130, intron 4 of 15)	intron (NM_001357130, intron 4 of 15)	5966.0	NM_001357130	74764.0	Mm.279599	NM_029091	ENSMUSG00000003546	Klc4	1200014P03Rik|AA408085|AW146303|Knsl8	kinesin light chain 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-24599967-4	chr16	24599852	24600052	+	999.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 4 of 12)	intron (NM_178665, intron 4 of 12)	70638.0	NR_038091	624582.0	Mm.439775	NR_038091		Morf4l1-ps1	A730098P11Rik	mortality factor 4 like 1, pseudogene 1	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-138442760-1	chr3	138442660	138442860	+	1000.0	f0_c57.idr	promoter-TSS (NM_007410)	promoter-TSS (NM_007410)	-333.0	NM_007410	11532.0	Mm.3874	NM_007410	ENSMUSG00000028138	Adh5	Adh-5|Adh3|GSNOR	alcohol dehydrogenase 5 (class III), chi polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-49901752-4	chr11	49901637	49901837	+	997.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347462)	promoter-TSS (NM_001347462)	-98.0	NM_029004	74563.0	Mm.258798	NM_029004	ENSMUSG00000020374	Rasgef1c	9130006A14Rik	RasGEF domain family, member 1C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-107783503-4	chr3	107783402	107783602	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23033.0	NM_001113529	12977.0	Mm.795	NM_007778	ENSMUSG00000014599	Csf1	C87615|Csfm|MCSF|op	colony stimulating factor 1 (macrophage)	protein-coding	3.08114109373375	3.25683151345701	3.58165546779673	3.1561982361915	3.01849317749022	3.16825703999084	3.92818163417926	3.63814817483182	0.333723837616763	0.557451639358291	0.960321604678676
Merged-chr7-122329296-3	chr7	122329191	122329391	+	909.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316672, intron 2 of 16)	intron (NM_001316672, intron 2 of 16)	40166.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-3957606-3	chr7	3957506	3957706	+	824.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42105.0	NR_028115	18726.0	Mm.440989	NM_011090	ENSMUSG00000030427	Lilra6	7M1|Pira3	leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-56411822-2	chr18	56411722	56411922	+	557.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360917, intron 1 of 13)	intron (NM_001360917, intron 1 of 13)	11482.0	NM_001360917	107022.0	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|Gramd2b|NS3TP2	GRAM domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-99164341-1	chr4	99164241	99164441	+	881.0	f1_balb.idr	Intergenic	Intergenic	-29593.0	NM_175029	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-53449326-3	chr10	53449228	53449428	+	917.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	39446.0	NR_152767	102640074.0	Mm.412957	NR_152767		Gm36229	-	predicted gene, 36229	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-129472851-4	chr6	129472747	129472947	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_132130)	promoter-TSS (NR_132130)	-68.0	NR_132130	56644.0	Mm.239516	NM_020008	ENSMUSG00000079293	Clec7a	BGR|Clecsf12|beta-GR	C-type lectin domain family 7, member a	protein-coding	5.64275421441702	5.60352587085318	6.00224378239531	5.55484676959092	5.75701759505683	5.60802918053869	6.07891954086165	5.69874743942583	0.0966416288316953	0.702291169008399	0.998431161219273
Merged-chr1-181230240-2	chr1	181230140	181230340	+	757.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18262.0	NM_145514	226757.0	Mm.289082	NM_145514	ENSMUSG00000038733	Wdr26	1600024A01Rik|AA693241|AI447817|AU044014|C77982|Gid7	WD repeat domain 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-130253418-4	chr5	130253322	130253522	+	906.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023248, intron 2 of 4)	intron (NM_023248, intron 2 of 4)	2108.0	NM_023248	66711.0	Mm.280484	NM_023248	ENSMUSG00000025337	Sbds	4733401P19Rik|AI836084|CGI-97|SDS	SBDS ribosome maturation factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-40585801-6	chr12	40585688	40585888	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	139735.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-5880135-2	chr11	5880035	5880235	+	949.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1879.0	NM_008894	18972.0	Mm.35788	NM_008894	ENSMUSG00000020471	Pold2	50kDa|p50|po1D2	polymerase (DNA directed), delta 2, regulatory subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-68383050-2	chr2	68382950	68383150	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016866, intron 5 of 17)	intron (NM_016866, intron 5 of 17)	88931.0	NM_016866	53416.0	Mm.198414	NM_016866	ENSMUSG00000027030	Stk39	AW227544|AW556857|DCHT|RF005|Rnl5|SPAK	serine/threonine kinase 39	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-96087685-2	chr16	96087585	96087785	+	589.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-5257.0	NM_145125	93871.0	Mm.240871	NM_145125	ENSMUSG00000022914	Brwd1	5330419I02Rik|D530019K20Rik|G1-403-16|Wdr9|repro5	bromodomain and WD repeat domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-17655896-2	chr6	17655796	17655996	+	706.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007604, intron 4 of 9)	intron (NM_007604, intron 4 of 9)	18886.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-34433379-4	chr1	34433292	34433492	+	997.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_039562)	promoter-TSS (NR_039562)	-193.0	NR_039562	100628580.0		NR_039562	ENSMUSG00000092852	Mir5103	mir-5103|mmu-mir-5103|mu-mir-5103	microRNA 5103	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-116246110-3	chr4	116245954	116246154	+	889.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355586, intron 1 of 9)	B2_Mm1t|SINE|B2	23307.0	NM_001355586	18710.0	Mm.253819	NM_181585	ENSMUSG00000028698	Pik3r3	AA414954|p55|p55pik	phosphoinositide-3-kinase regulatory subunit 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-57392698-4	chr1	57392608	57392808	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037742, intron 5 of 7)	intron (NM_001037742, intron 5 of 7)	-13840.0	NM_001081181	68115.0	Mm.275428	NM_001081181	ENSMUSG00000025971	Maip1	9430016H08Rik|AA409999|C78988	matrix AAA peptidase interacting protein 1	protein-coding	3.93570604614389	4.33619878940898	3.85282227468503	4.76438061744728	4.47379049277968	4.90952637286822	3.52215227942072	4.21834686493267	0.124385910823068	0.784276486030102	0.998431161219273
Merged-chr10-80808720-2	chr10	80808620	80808820	+	725.799988	f1_balb.idr|f1_c57bl6.idr	exon (NM_028001, exon 7 of 7)	exon (NM_028001, exon 7 of 7)	3472.0	NM_007445	11705.0	Mm.376094	NM_007445	ENSMUSG00000035262	Amh	MIS	anti-Mullerian hormone	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-78264594-6	chr17	78264484	78264684	+	953.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015800, intron 2 of 16)	Tigger12A|DNA|TcMar-Tigger	64336.0	NM_015800	50766.0	Mm.311912	NM_015800	ENSMUSG00000024074	Crim1	AU015004	cysteine rich transmembrane BMP regulator 1 (chordin like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-16618128-1	chr11	16618028	16618228	+	599.0	f1_c57bl6.idr	Intergenic	Intergenic	-109644.0	NM_001109971	20335.0	Mm.325350	NM_011343	ENSMUSG00000078974	Sec61g	-	SEC61, gamma subunit	protein-coding	0.566030479111283	0.699932851385169	0.86969807539745	0.201995643315084	0.34030214994124	0.214290742475708	0.386878494953245	0.202825903153449	-2.49681357368588	0.192984129720057	1
Merged-chr17-74315446-2	chr17	74315346	74315546	+	769.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001146224, intron 2 of 3)	intron (NM_001146224, intron 2 of 3)	765.0	NM_001146224	66310.0	Mm.28536	NM_024428	ENSMUSG00000024067	Dpy30	2810410M20Rik|C87842	dpy-30, histone methyltransferase complex regulatory subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-108660520-4	chr6	108660417	108660617	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011498)	promoter-TSS (NM_011498)	-112.0	NM_011498	20893.0	Mm.2436	NM_011498	ENSMUSG00000030103	Bhlhe40	Bhlhb2|C130042M06Rik|CR8|Clast5|Dec1|Sharp2|Stra13|Stra14	basic helix-loop-helix family, member e40	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-71817659-4	chr11	71817547	71817747	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	66632.0	NM_001357965	216881.0	Mm.48648	NM_177618	ENSMUSG00000020811	Wscd1	mKIAA0523	WSC domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118807830-3	chr9	118807717	118807917	+	945.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 4 of 13)	intron (NM_001113514, intron 4 of 13)	96125.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-63755730-4	chr7	63755630	63755830	+	994.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130880, intron 13 of 13)	intron (NM_130880, intron 13 of 13)	-161127.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-21053824-2	chr5	21053724	21053924	+	789.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011203, intron 1 of 17)	intron (NM_011203, intron 1 of 17)	2087.0	NM_001356591	19248.0	Mm.319117	NM_011203	ENSMUSG00000028771	Ptpn12	P19-PTP|PTP-P19|PTP-PEST|PTPG1	protein tyrosine phosphatase, non-receptor type 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-79621594-4	chr2	79621497	79621697	+	977.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-13828.0	NM_080558	70599.0	Mm.272881	NM_080558	ENSMUSG00000027007	Ssfa2	5730488C15Rik|CS-1|CS1|KRAP|SPAG13|mKIAA1927	sperm specific antigen 2	protein-coding	2.43551517762206	2.58826670851494	3.26203126433445	3.17310863392229	3.11305417189297	3.11840798632605	3.50598729356806	2.58226210549686	0.36360784784893	0.582946722706012	0.966599221005409
Merged-chr17-34036825-2	chr17	34036725	34036925	+	717.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011306, intron 7 of 9)	intron (NM_011306, intron 7 of 9)	-2313.0	NM_009926	12815.0	Mm.20230	NM_009926	ENSMUSG00000024330	Col11a2	-	collagen, type XI, alpha 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-132110906-4	chr2	132110799	132110999	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355430, intron 1 of 15)	intron (NM_001355430, intron 1 of 15)	34209.0	NM_001355431	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-39614108-2	chr4	39614008	39614208	+	803.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TTTTTG)n|Simple_repeat|Simple_repeat	163815.0	NM_001081095	75471.0	Mm.23522	NM_001081095	ENSMUSG00000028287	1700009N14Rik	AI429145	RIKEN cDNA 1700009N14 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-113446577-2	chr2	113446488	113446688	+	842.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285459, intron 2 of 16)	intron (NM_001285459, intron 2 of 16)	5524.0	NM_001285459	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	-0.182534527491087	-1.00895016391444	-1.0218572941639	-1.02617529563146	-1.02981053641889	-1.006153134946	-1.01893540279166	-1.02572713344884	-3.09936526392938	0.343406696059999	1
Merged-chr13-23738830-4	chr13	23738722	23738922	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015786)	promoter-TSS (NM_015786)	15.0	NM_015786	50708.0	Mm.193539	NM_015786	ENSMUSG00000036181	Hist1h1c	0610008C09Rik|H1.2|H1c|H1f2|H1var1|His1a	histone cluster 1, H1c	protein-coding	5.30782927231101	5.65776226408589	5.29053583763892	5.47202809694011	5.45906741341665	5.8239342378534	3.77111047887434	5.30555140164941	-0.191296364791826	0.601048925669062	0.973196357648773
Merged-chr3-137938688-3	chr3	137938557	137938757	+	895.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011932, intron 6 of 8)	intron (NM_011932, intron 6 of 8)	20102.0	NM_019920	56692.0	Mm.331392	NM_019920	ENSMUSG00000091512	Lamtor3	AW556229|Map2k1ip1|Mapbp|Mapksp1|Mp1	late endosomal/lysosomal adaptor, MAPK and MTOR activator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-3002137-2	chr9	3002037	3002237	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	GSAT_MM|Satellite|Satellite	36606.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-50820377-4	chr15	50820283	50820483	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310485, intron 5 of 7)	intron (NM_001310485, intron 5 of 7)	68666.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-44714622-3	chr18	44714532	44714732	+	877.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085373, intron 3 of 18)	intron (NM_001085373, intron 3 of 18)	-52366.0	NM_001085374	328949.0	Mm.312511	NM_001033406	ENSMUSG00000071856	Mcc	D18Ertd451e|E330037C19	mutated in colorectal cancers	protein-coding	1.97816903836393	1.76050717959356	1.87274124034988	1.47692028782556	1.74824108950948	2.64913838635214	2.37951458167445	2.30542630721172	1.38468116616065	0.138188725175168	0.580121877064962
Merged-chr17-28234972-2	chr17	28234872	28235072	+	779.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011145, intron 1 of 7)	intron (NM_011145, intron 1 of 7)	2218.0	NM_011145	19015.0	Mm.328914	NM_011145	ENSMUSG00000002250	Ppard	NUC-1|NUC1|Nr1c2|PPAR-beta|PPAR-delta|PPAR[b]|PPARdelta|Pparb|Pparb/d	peroxisome proliferator activator receptor delta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-96916138-3	chr11	96916042	96916242	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030248, intron 2 of 13)	CpG	372.0	NM_001308183	80280.0	Mm.28297	NM_030248	ENSMUSG00000018669	Cdk5rap3	1810007E24Rik|BC002318|C53|C81486|HSF-27|IC53|LZAP|MST016	CDK5 regulatory subunit associated protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120159644-2	chr8	120159544	120159744	+	563.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163760, intron 10 of 12)	intron (NM_001163760, intron 10 of 12)	14715.0	NM_001163760	234797.0	Mm.101958	NM_172286	ENSMUSG00000031824	6430548M08Rik	AW049007|Kiaa0513|mKIAA0513	RIKEN cDNA 6430548M08 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-95608470-2	chr16	95608370	95608570	+	743.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR31A_Mm|LTR|ERVK	-21877.0	NM_001302152	13876.0	Mm.164531	NM_133659	ENSMUSG00000040732	Erg	D030036I24Rik	ETS transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-65495973-4	chr18	65495897	65496097	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_105742, intron 3 of 6)	intron (NR_105742, intron 3 of 6)	65000.0	NM_172833	240354.0	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	5.05654865582777	5.57128753502777	6.40797231744609	6.22221764450378	6.24517067020351	6.35790249068492	5.87895434936157	6.95650704778719	0.55318875702627	0.0703347708639084	0.398933145678462
Merged-chr7-29784016-4	chr7	29783924	29784124	+	974.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360207)	promoter-TSS (NM_001360207)	56.0	NM_001360209	22693.0	Mm.292690	NM_013705	ENSMUSG00000047473	Zfp30	2610306P15Rik|Zfp-30	zinc finger protein 30	protein-coding	1.67950063719479	1.62641547530137	4.1972144668007	3.03470761525005	3.29832365899163	3.69859341069059	3.15372646544138	3.66223426008763	0.581191948666217	0.464601716366173	0.922521920152562
Merged-chr7-89481935-3	chr7	89481837	89482037	+	953.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35649.0	NM_029614	76453.0	Mm.250438	NM_029614	ENSMUSG00000039405	Prss23	2310046G15Rik|4930479H08Rik|AI790574|Spuve	protease, serine 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-54285158-4	chr6	54285063	54285263	+	938.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163640, intron 7 of 12)	intron (NM_001163640, intron 7 of 12)	12341.0	NM_023543	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	3.42201349377403	3.3026942710338	3.29236149394046	3.66392027386634	3.51391081682391	3.32662881004984	3.57736058233967	3.68154117490927	0.159453743377997	0.760862904620834	0.998431161219273
Merged-chr4-115657679-1	chr4	115657579	115657779	+	541.0	f1_c57bl6.idr	Intergenic	RLTR1D2_MM|LTR|ERV1	-9974.0	NM_007823	13120.0	Mm.1840	NM_007823	ENSMUSG00000028713	Cyp4b1	-	cytochrome P450, family 4, subfamily b, polypeptide 1	protein-coding	-0.326729342349691	-0.864985793131021	-0.870967364213491	-0.573694493420517	-0.87627565519977	-0.862303372188385	-0.870336509355446	-0.872786267886694	-2.98900914233966	0.322301742447038	1
Merged-chr10-67611110-4	chr10	67611018	67611218	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-39159.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-9485440-4	chr18	9485336	9485536	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35282.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	2.20183421400771	2.62156296000536	3.14248647889888	2.16633772992271	2.35200733767546	3.42387737396582	3.08426332237699	2.81075627883925	0.712034387612735	0.333278958634088	0.833601405219443
Merged-chr7-30650283-4	chr7	30650170	30650370	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133693)	promoter-TSS (NM_133693)	-42.0	NM_133693	68035.0	Mm.401747	NM_133693	ENSMUSG00000036733	Rbm42	1700003D06Rik|3100004P22Rik	RNA binding motif protein 42	protein-coding	5.23651290717947	5.06851290229638	5.50075418597422	4.98139956447966	5.29950305138777	5.90669864619567	6.14174236455197	5.82182949441363	0.689853866985984	0.0163040577256525	0.154048403347231
Merged-chr16-23375082-4	chr16	23374984	23375184	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19C|LTR|ERVK	-54049.0	NM_001004151	239766.0	Mm.208751	NM_001004151	ENSMUSG00000033383	Rtp1	Gm1766|Gm604	receptor transporter protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-122804073-4	chr10	122803978	122804178	+	786.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110218, intron 3 of 9)	intron (NM_001110218, intron 3 of 9)	124763.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	3.00449505500657	2.83096021852657	3.10399696690784	2.42197763371087	3.09327571906348	2.08725869291268	1.52169768023394	3.10829402468966	-0.426158965315236	0.599108767352686	0.972303230574462
Merged-chr10-77967271-4	chr10	77967161	77967361	+	807.049988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138301, intron 2 of 33)	intron (NM_138301, intron 2 of 33)	2611.0	NM_138301	28240.0	Mm.276762	NM_138301	ENSMUSG00000009292	Trpm2	9830168K16Rik|C79133|LTRPC2|TRPC7|Trp7|Trrp7	transient receptor potential cation channel, subfamily M, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-115682539-4	chr3	115682441	115682641	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1|SINE|Alu	32514.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-29001594-1	chr7	29001494	29001694	+	541.0	f1_c57bl6.idr	intron (NM_001355054, intron 28 of 31)	intron (NM_001355054, intron 28 of 31)	18740.0	NM_008279	26411.0	Mm.148278	NM_008279	ENSMUSG00000037337	Map4k1	Hpk1|mHPK1	mitogen-activated protein kinase kinase kinase kinase 1	protein-coding	0.498257836503786	0.529375438748747	1.25575135401229	1.10240097334368	0.500234273168908	0.531630472727316	1.26943684845007	1.11013306929211	0.0356834543587615	0.983562328423902	0.998431161219273
Merged-chr1-171382273-4	chr1	171382176	171382376	+	911.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122680, intron 2 of 7)	B2_Mm1t|SINE|B2	-6684.0	NM_001005508	226652.0	Mm.251048	NM_001005508	ENSMUSG00000048865	Arhgap30	6030405P05Rik|Gm102|mFLJ00267	Rho GTPase activating protein 30	protein-coding	-1.33664238024077	-1.30732081564108	-1.31725863230831	-1.3254218508089	-0.952244101754967	-1.3051672493127	-1.31500892844558	-1.16759341372862	2.25470230303775	0.506155757978017	1
Merged-chr18-61210443-2	chr18	61210343	61210543	+	765.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007885, intron 1 of 3)	intron (NM_007885, intron 1 of 3)	1153.0	NM_007885	13521.0	Mm.24803	NM_007885	ENSMUSG00000034320	Slc26a2	Dtd|ST-OB	solute carrier family 26 (sulfate transporter), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30692659-2	chr2	30692559	30692759	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14648.0	NR_136917	665635.0	Mm.450149	NR_136917		Gm14486	-	predicted gene 14486	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-6417094-2	chr11	6417017	6417217	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008907, intron 1 of 4)	intron (NM_008907, intron 1 of 4)	1247.0	NM_008907	268373.0	Mm.5246	NM_008907	ENSMUSG00000071866	Ppia	2700098C05|Cphn|CyP-18|CypA	peptidylprolyl isomerase A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-117159980-4	chr5	117159890	117160090	+	960.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081308, intron 1 of 19)	intron (NM_001081308, intron 1 of 19)	26402.0	NM_183306	330177.0	Mm.24343	NM_183306	ENSMUSG00000061288	Taok3	2900006A08Rik|A130052D22|A430105I05Rik	TAO kinase 3	protein-coding	3.87980986039009	3.68309991931137	3.38725317033416	3.09214625795826	3.64586537210809	4.56869796748555	2.67769963087749	2.99689008412151	0.200240351806259	0.741469544685445	0.998431161219273
Merged-chr7-126756338-2	chr7	126756238	126756438	+	855.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3288.0	NM_011952	26417.0	Mm.8385	NM_011952	ENSMUSG00000063065	Mapk3	Erk-1|Erk1|Ert2|Esrk1|Mnk1|Mtap2k|Prkm3|p44|p44erk1|p44mapk	mitogen-activated protein kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-12435893-2	chr13	12435793	12435993	+	711.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144835, intron 43 of 44)	intron (NM_144835, intron 43 of 44)	23423.0	NM_001291055	56048.0	Mm.474138	NM_018886	ENSMUSG00000057554	Lgals8	1200015E08Rik|AI326142|D13Ertd524e|Lgals-8	lectin, galactose binding, soluble 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-135605239-4	chr7	135605143	135605343	+	852.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001316679)	promoter-TSS (NM_001316679)	-585.0	NM_001316679	19267.0	Mm.945	NM_011212	ENSMUSG00000041836	Ptpre	PTPe|PTPepsilon|RPTPepsilon	protein tyrosine phosphatase, receptor type, E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124496554-2	chr6	124496454	124496654	+	869.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_181344, intron 2 of 5)	MLT1A0|LTR|ERVL-MaLR	3441.0	NM_181344	232371.0	Mm.132974	NM_181344	ENSMUSG00000038527	C1rl	C1r-LP|C1rl1|C1rlp	complement component 1, r subcomponent-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-93192809-1	chr2	93192709	93192909	+	583.5	f0_c57.idr	intron (NM_001356537, intron 2 of 8)	intron (NM_001356537, intron 2 of 8)	5261.0	NM_001025246	277414.0	Mm.41033	NM_001025246	ENSMUSG00000068735	Trp53i11	Tp53i11	transformation related protein 53 inducible protein 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-108178589-4	chr10	108178495	108178695	+	957.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027892, intron 1 of 25)	RSINE1|SINE|B4	16195.0	NM_027892	17931.0	Mm.422959	NM_027892	ENSMUSG00000019907	Ppp1r12a	1200015F06Rik|5730577I22Rik|AA792106|AV099298|D10Ertd625e|Mypt1	protein phosphatase 1, regulatory (inhibitor) subunit 12A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129033292-4	chr4	129033185	129033385	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24986.0	NM_029219	75234.0	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-91852943-4	chr12	91852860	91853060	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3803.0	NM_011344	20338.0	Mm.250605	NM_011344	ENSMUSG00000020964	Sel1l	AW493766|Sel1h|mKIAA4137	sel-1 suppressor of lin-12-like (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-25468739-2	chr14	25468639	25468839	+	622.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	9554.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-115091657-2	chr14	115091557	115091757	+	744.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175500)	promoter-TSS (NM_175500)	-558.0	NM_175500	103978.0	Mm.320791	NM_175500	ENSMUSG00000022112	Gpc5	A230034F01Rik	glypican 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80348517-4	chr10	80348427	80348627	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285435)	promoter-TSS (NM_001285435)	-79.0	NR_104340	66548.0	Mm.71891	NM_025629	ENSMUSG00000043822	Adamtsl5	2010109H09Rik|Thsd6	ADAMTS-like 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-194976398-4	chr1	194976326	194976526	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033564, exon 1 of 5)	non-coding (NR_033564, exon 1 of 5)	533.0	NR_033564	320400.0	Mm.417608	NR_033564	ENSMUSG00000097325	Gm16897	C030002c11rik	predicted gene, 16897	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70609997-2	chr11	70609897	70610097	+	673.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001045964, intron 22 of 32)	intron (NM_001045964, intron 22 of 32)	-5897.0	NM_001145537	668433.0	Mm.425687	NM_001145537	ENSMUSG00000087279	4930544D05Rik	-	RIKEN cDNA 4930544D05 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-88903449-1	chr6	88903349	88903549	+	680.0	f0_balb.idr	intron (NM_011906, intron 1 of 11)	intron (NM_011906, intron 1 of 11)	1198.0	NM_011906	24100.0	Mm.284480	NM_011906	ENSMUSG00000002871	Tpra1	40kDa|Gpr175|Tpra40	transmembrane protein, adipocyte asscociated 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-75980361-2	chr16	75980261	75980461	+	547.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-20423.0	NR_155447	102632240.0	Mm.417237	NR_155447	ENSMUSG00000087214	Gm15555	-	predicted gene 15555	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-51604142-2	chr11	51604042	51604242	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_028398)	TTS (NM_028398)	2739.0	NM_001048061	15384.0	Mm.256875	NM_010448	ENSMUSG00000020358	Hnrnpab	3010025C11Rik|CBF-A|Cgbfa|Hnrpab	heterogeneous nuclear ribonucleoprotein A/B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-118429580-2	chr4	118429480	118429680	+	725.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039176)	promoter-TSS (NM_001039176)	-121.0	NM_001039176	54325.0	Mm.282096	NM_019422	ENSMUSG00000006390	Elovl1	AA407424|BB151133|Ssc1	elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28389983-2	chr7	28389883	28390083	+	591.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026042, intron 3 of 3)	B1_Mus2|SINE|Alu	2707.0	NM_026042	67224.0	Mm.41647	NM_026042	ENSMUSG00000003444	Med29	2810405O22Rik|AU020902|Ixl	mediator complex subunit 29	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-43636346-4	chr7	43636222	43636422	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028236, intron 1 of 5)	intron (NM_028236, intron 1 of 5)	1583.0	NM_028236	72431.0	Mm.158821	NM_028236	ENSMUSG00000030472	Ceacam18	2010110O04Rik	carcinoembryonic antigen-related cell adhesion molecule 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-24380147-3	chr7	24380097	24380297	+	957.2777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163510, intron 4 of 8)	intron (NM_001163510, intron 4 of 8)	9934.0	NM_008433	16534.0	Mm.9911	NM_008433	ENSMUSG00000054342	Kcnn4	IK1|IKCA1|KCA4|KCa3.1|SK4|SKCas|mIKCa1	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4	protein-coding	1.31145206383537	1.30443102620568	1.2498129279117	0.962534496448542	1.14374151714943	0.654280936417751	0.644073252504783	0.635288372767472	-2.14389063371459	0.16969399029312	0.636777052398932
Merged-chr11-79967911-2	chr11	79967811	79968011	+	884.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5524.0	NM_144826	216987.0	Mm.274961	NM_144826	ENSMUSG00000035575	Utp6	4732497O03Rik|HCA66	UTP6 small subunit processome component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-42897784-3	chr10	42897683	42897883	+	636.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359265, intron 1 of 6)	intron (NM_001359265, intron 1 of 6)	37271.0	NM_001359264	268297.0	Mm.98731	NM_172938	ENSMUSG00000044770	Scml4	9330161D17|mFLJ00197	Scm polycomb group protein like 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166786780-4	chr2	166786694	166786894	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-6973.0	NM_023815	76367.0	Mm.330796	NM_023815	ENSMUSG00000042854	Trp53rkb	2810408M09Rik|4933401B08Rik|5630401H01Rik|Nori-2|PRPK|Tp53rk|Trp53rk|Trp53tk|mNori-2p	transformation related protein 53 regulating kinase B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128948374-4	chr2	128948282	128948482	+	816.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER20|DNA|hAT-Charlie	-4362.0	NM_020594	57432.0	Mm.11675	NM_020594	ENSMUSG00000027387	Zc3h8	AU020882|E130108N08Rik|Fliz1|Zc3hdc8	zinc finger CCCH type containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-54699625-1	chr12	54699525	54699725	+	628.0	f1_balb.idr	Intergenic	Intergenic	-3731.0	NM_025456	66266.0	Mm.156440	NM_025456	ENSMUSG00000054302	Eapp	1810011O16Rik	E2F-associated phosphoprotein	protein-coding	-0.808893522388504	-0.797316808750051	-0.801092834496703	-0.623257690341296	-0.808166435533352	-0.79473281582361	0.0322839638396798	-0.803505658357834	2.43768423983094	0.400067826040859	1
Merged-chr8-108783409-4	chr8	108783322	108783522	+	884.68335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007496, intron 1 of 9)	intron (NM_007496, intron 1 of 9)	68778.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3913643-4	chr4	3913538	3913738	+	963.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019969, intron 2 of 5)	intron (NM_019969, intron 2 of 5)	24767.0	NM_019969	56711.0	Mm.331467	NM_019969	ENSMUSG00000003282	Plag1	-	pleiomorphic adenoma gene 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118621052-2	chr9	118620952	118621152	+	720.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 1 of 27)	intron (NM_133721, intron 1 of 27)	14343.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-23677485-4	chr17	23677394	23677594	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013749)	promoter-TSS (NM_013749)	-45.0	NM_013749	27279.0	Mm.28518	NM_013749	ENSMUSG00000023905	Tnfrsf12a	AI255180|C87282|Fn14|HPIP|TWEAK-R|TweakR	tumor necrosis factor receptor superfamily, member 12a	protein-coding	2.63590363674585	3.90766078532919	3.00768964465201	2.33390835263837	3.74732297821853	4.41404264312307	2.90695446486118	3.49088232144185	0.981728337936719	0.126514774784359	0.55689342891744
Merged-chr6-106787291-2	chr6	106787191	106787391	+	688.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_021449, intron 5 of 10)	intron (NM_021449, intron 5 of 10)	12796.0	NM_021449	58799.0	Mm.290085	NM_021449	ENSMUSG00000005362	Crbn	2610203G15Rik|2900045O07Rik|AF229032|AW108261|piL	cereblon	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-38249255-2	chr18	38249155	38249355	+	743.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024179)	promoter-TSS (NM_024179)	943.0	NR_015475	73516.0	Mm.48776	NR_015475	ENSMUSG00000097080	1700086O06Rik	-	RIKEN cDNA 1700086O06 gene	ncRNA	0.112883632721131	-0.0462927326460177	-0.234060734897501	-0.237213977439643	-0.103612835807282	-0.229032237056504	-0.233157509415518	0.370287873196073	0.660051883121936	0.773300006645268	1
Merged-chr2-128412500-4	chr2	128412411	128412611	+	907.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028591, intron 1 of 1)	intron (NR_028591, intron 1 of 1)	16840.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	3.06375917137573	2.64368389231486	3.24146442712468	3.07804414592802	2.69597295188655	3.21103287607011	2.43090382338973	1.80189627700445	-0.735926473343127	0.31173874124698	0.813466753570896
Merged-chr10-111465010-4	chr10	111464903	111465103	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8224.0	NM_001358932	53605.0	Mm.290407	NM_015781	ENSMUSG00000058799	Nap1l1	AA407126|AI256722|D10Ertd68e|NAP-1	nucleosome assembly protein 1-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43531144-2	chr4	43531044	43531244	+	629.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_011602)	TTS (NM_011602)	-7590.0	NM_001277875	22004.0	Mm.646	NM_009416	ENSMUSG00000028464	Tpm2	Tpm-2|Trop-2	tropomyosin 2, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94462415-2	chr10	94462315	94462515	+	794.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 2 of 4)	intron (NM_001359762, intron 2 of 4)	-52442.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-23805986-4	chr11	23805893	23806093	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35023.0	NM_009044	19696.0	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125275487-2	chr6	125275387	125275587	+	570.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9962.0	NR_015527	73870.0	Mm.440681	NR_015527	ENSMUSG00000108129	4930417O13Rik	-	RIKEN cDNA 4930417O13 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-103123872-2	chr3	103123772	103123972	+	610.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-3684.0	NM_177857	329727.0	Mm.293641	NM_177857	ENSMUSG00000007379	Dennd2c	A930010I20Rik	DENN/MADD domain containing 2C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53594444-2	chr4	53594344	53594544	+	956.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133891, intron 15 of 15)	intron (NM_133891, intron 15 of 15)	-37027.0	NM_176966	319636.0	Mm.103464	NM_176966	ENSMUSG00000054752	Fsd1l	A230072O16Rik|Ccdc10|Csdufd1|Fsd1nl	fibronectin type III and SPRY domain containing 1-like	protein-coding	-1.06932346315282	-1.04545378193536	-0.220844647149311	-1.06494782147003	-1.06867040657128	-1.04264807175102	-1.05547001227371	-1.06448932552894	-3.08190232315036	0.346744811462451	1
Merged-chr13-29983728-2	chr13	29983634	29983834	+	890.583374	f0_balb.idr|f0_c57.idr	intron (NM_010093, intron 1 of 6)	intron (NM_010093, intron 1 of 6)	657.0	NM_001289920	13557.0	Mm.268356	NM_010093	ENSMUSG00000016477	E2f3	E2F3b|E2f3a	E2F transcription factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-140819616-4	chr6	140819493	140819693	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	192708.0	NM_001309436	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28392307-2	chr7	28392207	28392407	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019458)	promoter-TSS (NM_019458)	383.0	NM_026042	67224.0	Mm.41647	NM_026042	ENSMUSG00000003444	Med29	2810405O22Rik|AU020902|Ixl	mediator complex subunit 29	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-62571897-1	chr7	62571797	62571997	+	770.0	f0_balb.idr	Intergenic	IAPLTR3-int|LTR|ERVK	-107387.0	NM_013788	27412.0	Mm.422745	NM_013788	ENSMUSG00000070526	Peg12	Frat3	paternally expressed 12	protein-coding	-0.0341127124731921	-0.167623961632982	0.6127237830175	-0.176950426577205	-0.182712630550139	-0.16644028039964	-0.171722125723226	0.382020766743328	-0.85919349664049	0.714323600990568	1
Merged-chr2-79059240-2	chr2	79059140	79059340	+	669.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	189562.0	NR_151457	22193.0	Mm.1485	NM_009454	ENSMUSG00000027011	Ube2e3	Ubce4|ubcM2	ubiquitin-conjugating enzyme E2E 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-74880250-4	chr17	74880153	74880353	+	822.19165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-125276.0	NM_019919	268977.0	Mm.269747	NM_019919	ENSMUSG00000001870	Ltbp1	9430031G15Rik|9830146M04|Ltbp-1|Ltbp1L|TGF-beta1-BP-1|Tgfb|b2b1000Clo	latent transforming growth factor beta binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-86511145-2	chr6	86511045	86511245	+	676.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB7|LINE|L1	15044.0	NM_011865	23983.0	Mm.274146	NM_011865	ENSMUSG00000051695	Pcbp1	WBP17|[a]CP-1|alphaCP-1|hnRNP E1|hnRNP-E1	poly(rC) binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-32689991-2	chr19	32689891	32690091	+	846.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026487, intron 6 of 9)	intron (NM_026487, intron 6 of 9)	22307.0	NM_026487	67979.0	Mm.27123	NM_026487	ENSMUSG00000013662	Atad1	4921525H23Rik|AW107648|Thorase	ATPase family, AAA domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-55399771-2	chr13	55399671	55399871	+	575.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011392, intron 1 of 12)	intron (NM_011392, intron 1 of 12)	123.0	NM_011392	20505.0	Mm.276355	NM_011392	ENSMUSG00000021490	Slc34a1	NaPi-IIa|Npt2|Npt2a|Slc17a2	solute carrier family 34 (sodium phosphate), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-27877734-2	chr15	27877634	27877834	+	772.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081302, intron 10 of 56)	intron (NM_001081302, intron 10 of 56)	148114.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-87758540-2	chr1	87758432	87758632	+	634.25	f0_balb.idr|f1_balb.idr	intron (NM_029846, intron 1 of 17)	intron (NM_029846, intron 1 of 17)	2521.0	NM_001205392	77040.0	Mm.272972	NM_029846	ENSMUSG00000026289	Atg16l1	1500009K01Rik|Apg16l|Atg16l|WDR30	autophagy related 16-like 1 (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-44812204-4	chr18	44812121	44812321	+	893.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001085373)	promoter-TSS (NM_001085373)	-39.0	NM_001085373	328949.0	Mm.312511	NM_001033406	ENSMUSG00000071856	Mcc	D18Ertd451e|E330037C19	mutated in colorectal cancers	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-6678018-2	chr11	6677918	6678118	+	597.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_019511)	TTS (NM_019511)	-17782.0	NR_028586	100041311.0	Mm.388018	NR_028586	ENSMUSG00000086373	Gm11978	-	predicted gene 11978	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122684123-4	chr5	122684010	122684210	+	967.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001284402, exon 13 of 13)	3' UTR (NM_001284402, exon 13 of 13)	1513.0	NR_106195	102465902.0		NR_106195	ENSMUSG00000099324	Mir8115	Gm28012|mmu-mir-8115	microRNA 8115	ncRNA	4.21955841475282	5.10297243223583	4.03170848642931	4.52342637435013	3.93761268152503	4.46021507257301	3.99010982389308	4.85594643748975	-0.208913362484958	0.626805000422809	0.980912176761026
Merged-chr11-94716975-4	chr11	94716828	94717028	+	685.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger1|DNA|TcMar-Tigger	-12429.0	NM_001007584	432589.0	Mm.342314	NM_001007584	ENSMUSG00000056008	Gm11541	-	predicted gene 11541	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171386126-2	chr1	171386007	171386207	+	629.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001122680, intron 7 of 7)	intron (NM_001122680, intron 7 of 7)	-2853.0	NM_001005508	226652.0	Mm.251048	NM_001005508	ENSMUSG00000048865	Arhgap30	6030405P05Rik|Gm102|mFLJ00267	Rho GTPase activating protein 30	protein-coding	-1.2276735044944	-1.20138836966063	-1.21202761258731	-1.2207670035018	-1.22721880906488	-1.19908280133575	-0.751884428580139	-1.05459659029088	2.53706087379056	0.440403192504846	1
Merged-chr6-142525029-4	chr6	142524923	142525123	+	868.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17066.0	NM_001316322	16832.0	Mm.9745	NM_008492	ENSMUSG00000030246	Ldhb	AI790582|H-Ldh|LDH-B|LDH-H|Ldh-2|Ldh2	lactate dehydrogenase B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-83548329-4	chr9	83548222	83548422	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172507)	promoter-TSS (NM_172507)	-16.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-154019670-4	chr4	154019566	154019766	+	933.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001163722)	TTS (NM_001163722)	6378.0	NM_001163722	68859.0	Mm.477488	NM_001033144	ENSMUSG00000078350	Smim1	0610011H04Rik|1190007F08Rik|2700009I11Rik	small integral membrane protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-4663508-2	chr13	4663408	4663608	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54344.0	NM_018859	56043.0	Mm.251908	NM_018859	ENSMUSG00000045410	Akr1e1	1810061I10Rik|Akr1e2	aldo-keto reductase family 1, member E1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-65150045-4	chr14	65149955	65150155	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-51949.0	NM_001360385	54616.0	Mm.103748	NM_018788	ENSMUSG00000021978	Extl3	2900009G18Rik|AU040105|Ext1l|mKIAA0519	exostoses (multiple)-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-142021870-4	chr4	142021769	142021969	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131014, intron 1 of 1)	ORR1D2|LTR|ERVL-MaLR	3971.0	NR_131014	78917.0	Mm.139995	NR_131014	ENSMUSG00000085761	4930455G09Rik	-	RIKEN cDNA 4930455G09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-104017578-1	chr2	104017478	104017678	+	617.0	f1_c57bl6.idr	intron (NM_175161, intron 3 of 4)	B3|SINE|B2	-10221.0	NM_020593	57443.0	Mm.143768	NM_020593	ENSMUSG00000027180	Fbxo3	1200002G09Rik|1700026K02Rik|AI046358|Fba	F-box protein 3	protein-coding	-1.12478587510792	-0.76385641581656	-0.943442051228293	-1.12167092703585	-1.1243233369762	-1.10020526840982	-0.939215131385868	-1.12089621205865	-1.45872328129066	0.629087680442783	1
Merged-chr6-124507568-3	chr6	124507469	124507669	+	818.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181344, intron 5 of 5)	L1MB7|LINE|L1	-5052.0	NM_023143	50909.0	Mm.333375	NM_023143	ENSMUSG00000055172	C1ra	AI132558|C1r|mC1rA	complement component 1, r subcomponent A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-57554623-2	chr9	57554523	57554723	+	833.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	-1871.0	NM_025837	110119.0	Mm.247218	NM_025837	ENSMUSG00000032306	Mpi	1110002E17Rik|AI315153|Mpi-1|Mpi1	mannose phosphate isomerase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-147891949-4	chr5	147891827	147892027	+	801.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357002, intron 2 of 5)	(GGGTG)n|Simple_repeat|Simple_repeat	2888.0	NM_001357002	71706.0	Mm.153218	NM_027872	ENSMUSG00000029650	Slc46a3	1200006F02Rik	solute carrier family 46, member 3	protein-coding	2.97524106814404	2.30076772122192	2.03392287608363	3.60361535536409	2.21265163727185	2.48869154032787	3.08621695667766	3.07326880370462	-0.225610482169392	0.769275074998439	0.998431161219273
Merged-chr11-110479650-1	chr11	110479550	110479750	+	590.0	f1_balb.idr	intron (NM_001356346, intron 1 of 11)	intron (NM_001356346, intron 1 of 11)	310.0	NM_001356346	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	1.85106848246534	1.45604039509609	1.56423313664632	1.52011063632317	1.86761607164057	1.02959994939407	2.12756184429219	0.995099641953698	0.0444906035122606	0.97084608281427	0.998431161219273
Merged-chr6-81965854-4	chr6	81965750	81965950	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026490)	promoter-TSS (NM_026490)	99.0	NM_026490	56284.0	Mm.276293	NM_026490	ENSMUSG00000030045	Mrpl19	9030416F12Rik|9130412E02Rik|D6Ertd157e|MRP-L15|RLX1|Rpml15	mitochondrial ribosomal protein L19	protein-coding	4.43833407908962	4.60949351914405	4.73289124795166	3.56910361715786	3.9047879949572	4.30034604660458	5.0523774888006	3.29010580558829	-0.150777547062747	0.757697816472322	0.998431161219273
Merged-chr11-21154649-2	chr11	21154545	21154745	+	711.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	55776.0	NR_151470	108167888.0		NR_151470		2610024D14Rik	-	ATP synthase subunit g, mitochondrial pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-34937825-1	chr16	34937725	34937925	+	558.0	f1_c57bl6.idr	intron (NR_040536, intron 1 of 2)	intron (NR_040536, intron 1 of 2)	1504.0	NR_040536	76649.0	Mm.420532	NR_040536	ENSMUSG00000100593	1700119H24Rik	-	RIKEN cDNA 1700119H24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-83993221-1	chr8	83993121	83993321	+	575.0	f1_c57bl6.idr	intron (NM_008854, intron 8 of 9)	PB1D10|SINE|Alu	-4451.0	NM_001081415	666704.0	Mm.298091	NM_001081415	ENSMUSG00000079003	Samd1	AA589507	sterile alpha motif domain containing 1	protein-coding	0.935970428152377	0.139913288371992	0.133272779043454	0.784515486988112	0.522603900920632	0.141406274193517	0.134739860891375	0.129029217076781	-2.10863599095473	0.326217426822125	1
Merged-chr7-16228316-2	chr7	16228197	16228397	+	751.666626	f0_balb.idr|f1_c57bl6.idr	Intergenic	MurERV4-int|LTR|ERVK	-6265.0	NM_027883	71723.0	Mm.75259	NM_027883	ENSMUSG00000006019	Dhx34	1200013B07Rik|1810012L18Rik|Ddx34|mKIAA0134	DEAH (Asp-Glu-Ala-His) box polypeptide 34	protein-coding	1.77386848700216	1.99780489826821	2.68048226465956	1.14922557008088	2.42345036545925	2.01317313086353	1.42068451700526	1.57572851029435	-0.258068013947157	0.808994903124624	0.998431161219273
Merged-chr15-25303228-4	chr15	25303100	25303300	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	110564.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	1.20197991956082	1.44349768942811	1.37136409884141	2.46303032601138	4.05574112315559	3.76242787596441	4.00515110962344	4.76104067944964	4.48113708910655	7.80858810283847e-08	7.28140725838259e-06
Merged-chr9-7825055-4	chr9	7824940	7825140	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007465, intron 4 of 7)	intron (NM_007465, intron 4 of 7)	11766.0	NM_001291503	11797.0	Mm.335659	NM_007465	ENSMUSG00000057367	Birc2	AW146227|Api1|Api2|Birc3|C-IAP1|C330006D17Rik|HIAP1|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF48|cIAP1|cIAP2|mcIAP1	baculoviral IAP repeat-containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-98871281-2	chr7	98871181	98871381	+	938.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32436.0	NM_001285795	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-32868404-2	chr13	32868277	32868477	+	827.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A1|LTR|ERVL-MaLR	-17192.0	NM_025429	66222.0	Mm.20144	NM_025429	ENSMUSG00000044734	Serpinb1a	1190005M04Rik|AI325983|EI|EIA|ELANH2|LEI|M/NEI|MNEI|PI2	serine (or cysteine) peptidase inhibitor, clade B, member 1a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-41248294-2	chr13	41248194	41248394	+	686.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-1550.0	NM_001135577	108934.0	Mm.38578	NM_001135577	ENSMUSG00000091264	Smim13	2900036K02Rik	small integral membrane protein 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-87651623-4	chr1	87651518	87651718	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110192, intron 2 of 26)	MTC|LTR|ERVL-MaLR	31306.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-100411256-2	chr15	100411145	100411345	+	994.916626	f0_c57.idr|f1_c57bl6.idr	intron (NM_001356952, intron 2 of 15)	intron (NM_001356952, intron 2 of 15)	11810.0	NM_001146161	18174.0	Mm.234608	NM_008732	ENSMUSG00000023030	Slc11a2	DCT1|DMT1|Nramp2|mk|van	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2	protein-coding	4.99568122722829	4.36989994587026	4.81936455257181	4.26646838099828	3.18050337604484	2.39967284653872	2.5116983959838	3.14936419523574	-2.51599207567255	9.3259328515813e-07	6.059162943318e-05
Merged-chr8-54671978-3	chr8	54671897	54672097	+	679.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001172152, intron 9 of 29)	intron (NM_001172152, intron 9 of 29)	46681.0	NM_028220	244484.0	Mm.95281	NM_028220	ENSMUSG00000039375	Wdr17	3010002I12Rik|B230207L18Rik	WD repeat domain 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-50223795-3	chr11	50223662	50223862	+	866.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	-1573.0	NM_145926	103534.0	Mm.86759	NM_145926	ENSMUSG00000036620	Mgat4b	AA407995|GnTIVb	mannoside acetylglucosaminyltransferase 4, isoenzyme B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-112268633-2	chr5	112268533	112268733	+	813.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001312893, intron 5 of 5)	intron (NM_001312893, intron 5 of 5)	-8058.0	NM_001326590	22022.0	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-58721540-2	chr1	58721440	58721640	+	894.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355056, intron 1 of 8)	intron (NM_001355056, intron 1 of 8)	8254.0	NM_001355056	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-43884832-2	chr19	43884732	43884932	+	708.1999509999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_028029, intron 4 of 15)	MTE2a|LTR|ERVL-MaLR	-5064.0	NM_001306088	71972.0	Mm.159024	NM_028029	ENSMUSG00000025195	Dnmbp	2410003L07Rik|2410003M15Rik|TUBA	dynamin binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-83805859-2	chr8	83805759	83805959	+	725.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64548.0	NM_001163031	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115199352-2	chr11	115199266	115199466	+	1000.0	f0_c57.idr|f1_balb.idr	intron (NM_001033393, intron 3 of 9)	intron (NM_001033393, intron 3 of 9)	11879.0	NM_001033393	320534.0	Mm.260587	NM_001033393	ENSMUSG00000045980	Tmem104	C630005D06Rik|mFLJ00021	transmembrane protein 104	protein-coding	3.51380048724045	2.97092133961532	3.37619484007257	3.95109663029885	3.05937547351038	2.32269998705499	3.48267814079191	3.12348827553092	-0.714258197706769	0.243007151408279	0.740501135099019
Merged-chr11-113732844-2	chr11	113732744	113732944	+	753.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163346, intron 1 of 1)	intron (NM_001163346, intron 1 of 1)	18316.0	NM_020006	56699.0	Mm.293378	NM_020006	ENSMUSG00000041598	Cdc42ep4	1500041M20Rik|Borg4|CEP4	CDC42 effector protein (Rho GTPase binding) 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-4654659-6	chr7	4654548	4654748	+	929.111084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172894, intron 1 of 23)	intron (NM_172894, intron 1 of 23)	4302.0	NM_172894	243819.0	Mm.258670	NM_172894	ENSMUSG00000052296	Ppp6r1	2010309P17Rik|AI836219|B430201G11Rik|D030074N20Rik|Pp6r1|Saps1|mKIAA1115	protein phosphatase 6, regulatory subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-20753076-3	chr10	20752976	20753176	+	938.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27998.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5926170-2	chr19	5926070	5926270	+	764.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-1354.0	NM_026772	104252.0	Mm.491103	NM_026772	ENSMUSG00000045664	Cdc42ep2	1110008C05Rik|Borg1|Cep2|D19Bwg1013e	CDC42 effector protein (Rho GTPase binding) 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-73091976-3	chr9	73091904	73092104	+	773.861084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301230, intron 6 of 6)	intron (NM_001301230, intron 6 of 6)	-10394.0	NM_025890	66991.0	Mm.471745	NM_025890	ENSMUSG00000092622	Khdc3	2410004A20Rik|AI467128|FILIA|OEEP48	KH domain containing 3, subcortical maternal complex member	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139406237-4	chr5	139406135	139406335	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177000)	promoter-TSS (NM_177000)	-152.0	NM_177000	319772.0	Mm.440271	NM_177000	ENSMUSG00000044092	C130050O18Rik	-	RIKEN cDNA C130050O18 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3983870-2	chr12	3983770	3983970	+	855.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001082483, intron 6 of 22)	intron (NM_001082483, intron 6 of 22)	28925.0	NM_001278583	18976.0	Mm.277996	NM_008895	ENSMUSG00000020660	Pomc	ACTH|BE|Beta-LPH|Clip|Gamma-LPH|Npp|Pomc-1|Pomc1|alpha-MSH|alphaMSH|beta-MSH|gamma-MSH	pro-opiomelanocortin-alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-125759154-3	chr8	125759031	125759231	+	697.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175561, exon 32 of 34)	exon (NM_175561, exon 32 of 34)	24928.0	NM_001310688	66566.0	Mm.25296	NM_025636	ENSMUSG00000031851	Ntpcr	2310079N02Rik|AI449709	nucleoside-triphosphatase, cancer-related	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-42914666-2	chr16	42914566	42914766	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285805, intron 1 of 10)	intron (NM_001285805, intron 1 of 10)	-2596.0	NR_040402	100503040.0	Mm.490721	NR_040402		Gm19522	-	predicted gene, 19522	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-35554094-2	chr7	35553994	35554194	+	685.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_033080, intron 1 of 2)	B1_Mus2|SINE|Alu	1834.0	NM_033080	110959.0	Mm.410206	NM_033080	ENSMUSG00000034875	Nudt19	D7Rp2|D7Rp2-r|D7Rp2-s|D7Rp2e|RP2-r|RP2-s	nudix (nucleoside diphosphate linked moiety X)-type motif 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-27926052-4	chr15	27925937	27926137	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081302, intron 1 of 56)	intron (NM_001081302, intron 1 of 56)	99811.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-101746463-1	chr2	101746363	101746563	+	704.0	f1_balb.idr	intron (NM_001355625, intron 5 of 8)	intron (NM_001355625, intron 5 of 8)	51244.0	NM_175181	72446.0	Mm.24138	NM_175181	ENSMUSG00000032841	Prr5l	2600010E01Rik|4833411O04Rik|Protor-2|Protor2	proline rich 5 like	protein-coding	-1.01707008444741	-0.993492043802862	-1.00764648088546	-1.01185324898415	-1.01628940292637	-0.0453400029982381	-1.00444222658639	-1.01130848519189	3.32945445846488	0.287936268400993	1
Merged-chr3-103383356-4	chr3	103383261	103383461	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	104068.0	NM_053170	94093.0	Mm.195036	NM_053170	ENSMUSG00000033014	Trim33	8030451N04Rik|AI413936|Ecto|Tif1g	tripartite motif-containing 33	protein-coding	5.71861488410616	6.49913795664318	5.19100469897791	5.43970918306175	6.07711324427309	6.6445370470605	5.74593896197735	6.31198130686548	0.475710072902837	0.111872804047333	0.523751271664787
Merged-chr4-75275942-4	chr4	75275848	75276048	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	2344.0	NM_025849	66928.0	Mm.24332	NM_025849	ENSMUSG00000028398	Dmac1	1700027K24Rik|3110001D03Rik|Tmem261	distal membrane arm assembly complex 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-5605987-1	chr2	5605887	5606087	+	696.0	f0_balb.idr	intron (NM_001290374, intron 1 of 9)	intron (NM_001290374, intron 1 of 9)	70059.0	NM_001290376	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	2.36473074975441	2.84838632538964	2.45609565285591	2.97062701321245	1.75254031992084	2.43537632895587	1.88757430480745	2.0038476965081	-1.47949629263326	0.0732988649228823	0.409295585484677
Merged-chr2-117303581-4	chr2	117303445	117303645	+	841.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011246, intron 3 of 16)	intron (NM_011246, intron 3 of 16)	39332.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-34437238-2	chr1	34437138	34437338	+	827.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_027159, exon 5 of 5)	3' UTR (NM_027159, exon 5 of 5)	2434.0	NM_027159	69668.0	Mm.379170	NM_027159	ENSMUSG00000042111	Ccdc115	2310061I09Rik|Ccp1	coiled-coil domain containing 115	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-120141315-4	chr10	120141214	120141414	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_028679)	TTS (NM_028679)	-28349.0	NM_080446	117599.0	Mm.214703	NM_080446	ENSMUSG00000020228	Helb	AI447783|D10Ertd664e	helicase (DNA) B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-145361301-4	chr4	145361205	145361405	+	823.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVB4_1B-LTR_MM|LTR|ERVK	-46158.0	NM_009401	21941.0	Mm.12810	NM_009401	ENSMUSG00000028602	Tnfrsf8	Cd30|D1S166E|Ki|Ki-1	tumor necrosis factor receptor superfamily, member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-109931658-4	chr9	109931559	109931759	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008633)	promoter-TSS (NM_008633)	-115.0	NM_001205331	17758.0	Mm.217318	NM_008633	ENSMUSG00000032479	Map4	AA407148|MAP-4|Mtap-4|Mtap4	microtubule-associated protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-76483875-2	chr11	76483775	76483975	+	705.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346670, intron 2 of 21)	intron (NM_001346670, intron 2 of 21)	10620.0	NM_001346670	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-147894100-4	chr5	147893940	147894140	+	903.2708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_027872, exon 2 of 6)	5' UTR (NM_027872, exon 2 of 6)	775.0	NM_001357002	71706.0	Mm.153218	NM_027872	ENSMUSG00000029650	Slc46a3	1200006F02Rik	solute carrier family 46, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10199002-4	chr19	10198899	10199099	+	755.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001271615)	TTS (NM_001271615)	4944.0	NM_001271615	14156.0	Mm.2952	NM_007999	ENSMUSG00000024742	Fen1	AW538437|FEN-1	flap structure specific endonuclease 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-136693501-1	chr6	136693401	136693601	+	847.0	f0_balb.idr	Intergenic	Intergenic	-31608.0	NM_025806	66857.0	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	2.63981092943831	3.24883818085801	4.23258828413305	3.696744938027	3.86581279038348	1.76438448386173	3.04343160829091	4.27121599648541	-0.0603647457576209	0.931891543468327	0.998431161219273
Merged-chr10-78090924-2	chr10	78090824	78091024	+	548.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21556.0	NM_015790	50723.0	Mm.17819	NM_015790	ENSMUSG00000000732	Icosl	AU044799|B7-H2|B7RP-1|B7h|BG071784|GI50|GL50|GL50-B|ICOS-L|Icoslg|LICOS|Ly115l|mKIAA0653	icos ligand	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135315442-4	chr4	135315351	135315551	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	37763.0	NM_016799	51796.0	Mm.1963	NM_016799	ENSMUSG00000028809	Srrm1	AA407769|POP101|Srm160	serine/arginine repetitive matrix 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-5807102-3	chr10	5807017	5807217	+	835.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1652.0	NM_025995	67141.0	Mm.197520	NM_025995	ENSMUSG00000019773	Fbxo5	2510044I10Rik|C85305|Emi1|Fbxo31	F-box protein 5	protein-coding	-0.887089368538095	-0.874506527268186	-0.705147508777669	-0.88341610874111	-0.886543788306144	-0.379186181594846	-0.70084601322295	-0.883028794063228	1.96889884440024	0.489344267088282	1
Merged-chr1-171917678-4	chr1	171917595	171917795	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_030710, exon 1 of 8)	5' UTR (NM_030710, exon 1 of 8)	233.0	NM_001347186	30925.0	Mm.486404	NM_030710	ENSMUSG00000015314	Slamf6	KAL1|KAL1b|Ly108|NTB-A|NTBA|SF2000	SLAM family member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59202517-4	chr15	59202411	59202611	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-104437.0	NR_045613	100416830.0	Mm.490788	NR_045613	ENSMUSG00000098528	Zfp572	4930472F24Rik	zinc finger protein 572	pseudo	3.99898908230829	3.75926821233787	3.46138210897538	3.16468466458233	3.59277873764051	4.56146727558417	3.66273636320464	3.55091074913997	0.390823860908881	0.453306757601719	0.919022385553468
Merged-chr5-122395287-1	chr5	122395187	122395387	+	553.0	f1_c57bl6.idr	intron (NM_019824, intron 1 of 6)	B4A|SINE|B4	3409.0	NM_019824	56378.0	Mm.275942	NM_019824	ENSMUSG00000029465	Arpc3	1110006A04Rik|p21-ARC|p21-Ar|p21Arc	actin related protein 2/3 complex, subunit 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-3972417-3	chr10	3972305	3972505	+	651.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172308)	promoter-TSS (NM_172308)	-670.0	NM_001170786	270685.0	Mm.184752	NM_172308	ENSMUSG00000040675	Mthfd1l	2410004L15Rik|AI647056|Fthfsdc1	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-53826128-4	chr5	53826035	53826235	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144517, intron 1 of 20)	intron (NM_144517, intron 1 of 20)	16508.0	NM_144517	67249.0	Mm.28823	NM_144517	ENSMUSG00000039178	Tbc1d19	2810453K03Rik	TBC1 domain family, member 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-71963825-4	chr6	71963725	71963925	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009088, exon 22 of 34)	exon (NM_009088, exon 22 of 34)	54772.0	NM_009088	20019.0	Mm.135581	NM_009088	ENSMUSG00000049553	Polr1a	194kDa|2900087K15Rik|3010014K16Rik|RPA194|Rpo1-4|mRPA1	polymerase (RNA) I polypeptide A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117300570-3	chr10	117300464	117300664	+	816.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-7696.0	NM_013590	17110.0	Mm.177539	NM_013590	ENSMUSG00000069515	Lyz1	Lyz|Lyzf3|Lzp-s	lysozyme 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116666787-4	chr11	116666706	116666906	+	917.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163318, intron 4 of 4)	intron (NM_001163318, intron 4 of 4)	-4854.0	NR_027821	66293.0	Mm.432051	NM_025472	ENSMUSG00000020812	1810032O08Rik	-	RIKEN cDNA 1810032O08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-90241192-4	chr11	90241078	90241278	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER67B|LTR|ERV1	-8298.0	NM_026178	67468.0	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-128506100-4	chr8	128506000	128506200	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008737)	TTS (NM_008737)	146859.0	NR_035436	100316680.0		NR_035436	ENSMUSG00000084523	Mir1903	Mirn1903|mmu-mir-1903	microRNA 1903	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124003382-2	chr5	124003282	124003482	+	768.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_145070)	TTS (NM_145070)	6530.0	NR_105999	102465625.0		NR_105999	ENSMUSG00000098454	Mir7032	Gm27309|mmu-mir-7032	microRNA 7032	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-195018358-3	chr1	195018247	195018447	+	964.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015566, intron 1 of 7)	intron (NR_015566, intron 1 of 7)	948.0	NR_015566	320977.0	Mm.99905	NR_015566	ENSMUSG00000096929	A330023F24Rik	C030002C11Rik	RIKEN cDNA A330023F24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-90785981-4	chr5	90785865	90786065	+	920.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_203320)	promoter-TSS (NM_203320)	-136.0	NM_203320	330122.0	Mm.244289	NM_203320	ENSMUSG00000029379	Cxcl3	Dcip1|Gm1960	chemokine (C-X-C motif) ligand 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-8470256-2	chr16	8470156	8470356	+	711.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146247)	promoter-TSS (NM_146247)	-557.0	NM_146247	239706.0	Mm.214953	NM_146247	ENSMUSG00000039345	Mettl22	-	methyltransferase like 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-34782636-4	chr2	34782561	34782761	+	723.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145522, intron 6 of 7)	intron (NM_145522, intron 6 of 7)	10571.0	NM_022310	14828.0	Mm.330160	NM_022310	ENSMUSG00000026864	Hspa5	AL022860|AU019543|Bip|D2Wsu141e|D2Wsu17e|Grp78|Hsce70|SEZ-7|Sez7|baffled|mBiP	heat shock protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-125514207-1	chr8	125514107	125514307	+	554.0	f0_c57.idr	intron (NM_001357372, intron 2 of 21)	intron (NM_001357372, intron 2 of 21)	-21374.0	NM_001081337	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	3.16218932561448	2.41410433215885	3.26851068179218	3.57854898711526	2.16020428987988	3.4034593312891	3.01963375192272	2.82171888270919	-0.446554759860091	0.512069160564109	0.945270217532891
Merged-chr1-92640644-4	chr1	92640555	92640755	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163425, intron 1 of 2)	intron (NM_001163425, intron 1 of 2)	1293.0	NR_028108	66915.0	Mm.30179	NM_001163425	ENSMUSG00000073616	Cops9	1110002M09Rik|Myeov2	COP9 signalosome subunit 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46762318-2	chr19	46762218	46762418	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_033569, exon 1 of 8)	exon (NM_033569, exon 1 of 8)	709.0	NM_001102471	94219.0	Mm.306903	NM_033569	ENSMUSG00000064105	Cnnm2	AU015877|AW048635|Acdp2|Clp2	cyclin M2	protein-coding	-2.18308165884198	-2.15547475440471	-2.16382331017202	-2.1706810624505	-2.18114370519566	-2.15366558754311	-2.03057248461154	-2.16945352807143	0.759018020146679	0.829933115115583	1
Merged-chr13-109446315-4	chr13	109446211	109446411	+	888.9249880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011056, intron 3 of 16)	intron (NM_011056, intron 3 of 16)	121567.0	NR_030644	100124489.0		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33685457-3	chr16	33685372	33685572	+	847.3999630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175256, intron 1 of 14)	intron (NM_175256, intron 1 of 14)	1006.0	NM_175256	77446.0	Mm.245741	NM_172934	ENSMUSG00000075254	Heg1	4632417D23Rik|5530401I02Rik|9530025L16Rik|BC038614|Gm629	heart development protein with EGF-like domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-47621806-3	chr9	47621658	47621858	+	892.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	91406.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-20345895-2	chr19	20345795	20345995	+	717.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44776.0	NM_010730	16952.0	Mm.248360	NM_010730	ENSMUSG00000024659	Anxa1	Anx-1|Anx-A1|C430014K04Rik|Lpc-1|Lpc1	annexin A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-143464079-4	chr7	143463963	143464163	+	914.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3013.0	NM_001161624	12577.0	Mm.168789	NM_009876	ENSMUSG00000037664	Cdkn1c	AL024410|CDKI|Kip2|p57(kip2)|p57Kip2	cyclin-dependent kinase inhibitor 1C (P57)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117862090-2	chr10	117861977	117862177	+	870.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-16103.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-129741886-1	chr6	129741786	129741986	+	584.0	f1_c57bl6.idr	Intergenic	MTC-int|LTR|ERVL-MaLR	-1402.0	NM_177155	320407.0	Mm.123265	NM_177155	ENSMUSG00000043932	Klri2	A530090P03Rik	killer cell lectin-like receptor family I member 2	protein-coding	-1.50417404399698	-1.47248724057959	-1.48206959147369	-1.33916669433727	-1.50194968898599	-1.47041070516711	-1.47990035727042	-1.18698362276213	0.779787177890154	0.824141860144995	1
Merged-chr17-7276690-2	chr17	7276590	7276790	+	589.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011299, intron 11 of 20)	intron (NM_011299, intron 11 of 20)	-47970.0	NM_011553	21461.0	Mm.264651	NM_011553	ENSMUSG00000071322	Tcp10a	D17Leh66A|D17Leh66aa|Gm10326|T66A-a|Tcp-10a	t-complex protein 10a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70546619-4	chr8	70546592	70546792	+	995.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007924, intron 1 of 11)	intron (NM_007924, intron 1 of 11)	7017.0	NM_007924	13716.0	Mm.271973	NM_007924	ENSMUSG00000070002	Ell	Ell1|Men	elongation factor RNA polymerase II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127059966-8	chr10	127059825	127060025	+	837.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001033262, exon 1 of 4)	5' UTR (NM_001033262, exon 1 of 4)	259.0	NM_001033262	216438.0	Mm.37892	NM_001033262	ENSMUSG00000040502	March9	AI608492|BC019560	membrane-associated ring finger (C3HC4) 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100357381-2	chr11	100357281	100357481	+	710.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-1240.0	NM_010404	15114.0	Mm.281700	NM_010404	ENSMUSG00000006930	Hap1	HAP-1	huntingtin-associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-137481341-3	chr5	137481240	137481440	+	558.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4276.0	NM_011741	22635.0	Mm.7984	NM_011741	ENSMUSG00000079173	Zan	Zan-test	zonadhesin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-102243986-4	chr15	102243873	102244073	+	882.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011244, intron 3 of 9)	intron (NM_011244, intron 3 of 9)	2527.0	NM_001042727	19411.0	Mm.1273	NM_011244	ENSMUSG00000001288	Rarg	Nr1b3|RAR-gamma|RARD|RARgamma2	retinoic acid receptor, gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-100125597-3	chr15	100125493	100125693	+	940.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159361, intron 2 of 37)	intron (NM_001159361, intron 2 of 37)	-28803.0	NM_172819	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-93199713-4	chr2	93199604	93199804	+	759.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025246, intron 7 of 7)	intron (NM_001025246, intron 7 of 7)	12156.0	NM_001025246	277414.0	Mm.41033	NM_001025246	ENSMUSG00000068735	Trp53i11	Tp53i11	transformation related protein 53 inducible protein 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-66932772-4	chr10	66932675	66932875	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12391.0	NR_138561	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-74839819-2	chr11	74839719	74839919	+	978.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010813, intron 4 of 5)	intron (NM_010813, intron 4 of 5)	8895.0	NM_010813	17428.0	Mm.3759	NM_010813	ENSMUSG00000000282	Mnt	Rox|bHLHd3	max binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-24468601-4	chr1	24468490	24468690	+	741.924988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007733, intron 11 of 50)	intron (NM_007733, intron 11 of 50)	118847.0	NM_007733	12823.0	Mm.329196	NM_007733	ENSMUSG00000026141	Col19a1	-	collagen, type XIX, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91068932-2	chr2	91068832	91069032	+	579.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290765, intron 1 of 9)	intron (NM_001290765, intron 1 of 9)	1383.0	NM_026721	68427.0	Mm.192375	NM_026721	ENSMUSG00000002105	Slc39a13	1100001L14Rik|AA387663|ZIP-13|ZIP13	solute carrier family 39 (metal ion transporter), member 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-85586646-2	chr9	85586546	85586746	+	606.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	162688.0	NM_001081282	108837.0	Mm.22315	NM_175371	ENSMUSG00000035941	Ibtk	5430411K16Rik|AA409502|BTKI|mKIAA1417	inhibitor of Bruton agammaglobulinemia tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-121803422-2	chr11	121803322	121803522	+	627.799988	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26796.0	NM_029049	74675.0	Mm.61213	NM_029049	ENSMUSG00000039198	Ptchd3	4930451E13Rik|4933440L20Rik|RNDEu-3	patched domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-130671482-3	chr7	130671387	130671587	+	862.9722289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_206856, intron 3 of 20)	intron (NM_206856, intron 3 of 20)	-21069.0	NM_001347637	57752.0	Mm.86322	NM_021314	ENSMUSG00000030852	Tacc2	mKIAA4180	transforming, acidic coiled-coil containing protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129377802-3	chr4	129377729	129377929	+	901.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_028603, exon 1 of 5)	5' UTR (NM_028603, exon 1 of 5)	199.0	NM_028603	73680.0	Mm.32997	NM_028603	ENSMUSG00000028807	Zbtb8a	2410081M15Rik|AI480941	zinc finger and BTB domain containing 8a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-3020781-2	chr9	3020683	3020883	+	745.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	GSAT_MM|Satellite|Satellite	17960.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-83984196-4	chr18	83984088	83984288	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	102374.0	NM_001081300	110796.0	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-108670098-2	chr5	108669998	108670198	+	830.666626	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_174870, exon 3 of 3)	3' UTR (NM_174870, exon 3 of 3)	4698.0	NM_001310692	231583.0	Mm.440571	NM_174870	ENSMUSG00000046959	Slc26a1	Sat1	solute carrier family 26 (sulfate transporter), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-147521087-2	chr4	147520987	147521187	+	985.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32190.0	NM_001014397	433804.0	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154	zinc finger protein 985	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-6444215-2	chr11	6444109	6444309	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_029938, intron 1 of 4)	CpG	234.0	NM_029938	77605.0	Mm.27624	NM_029938	ENSMUSG00000041126	H2afv	C530002L11Rik|H2a.z-2|H2av|Tg(Wnt1-cre)11Rth|Wnt1-Cre|Wnt1::Cre|Wnt1cre	H2A histone family, member V	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-66192568-3	chr2	66192430	66192630	+	836.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001047604, intron 25 of 28)	intron (NM_001047604, intron 25 of 28)	64087.0	NM_001047604	73668.0	Mm.250868	NM_001047604	ENSMUSG00000034848	Ttc21b	2410066K11Rik|Thm1|aln|mKIAA1992	tetratricopeptide repeat domain 21B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-12978189-4	chr7	12978090	12978290	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001168561, exon 1 of 5)	5' UTR (NM_001168561, exon 1 of 5)	342.0	NM_001168561	269870.0	Mm.62083	NM_175558	ENSMUSG00000033961	Zfp446	A630035I11Rik|A930031C22|AA120513|AV306632	zinc finger protein 446	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-27726518-1	chr15	27726418	27726618	+	587.5	f0_balb.idr	Intergenic	Intergenic	-44976.0	NM_001242423	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-90305178-4	chr15	90305072	90305272	+	954.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48538.0	NR_155426	102640415.0	Mm.394352	NR_155426	ENSMUSG00000116204	Gm36480	-	predicted gene, 36480	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-100028318-3	chr15	100028221	100028421	+	888.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-10343.0	NM_001159361	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-32656267-4	chr12	32656165	32656365	+	905.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-164070.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-27613007-4	chr15	27612913	27613113	+	856.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013792, intron 4 of 6)	intron (NM_001013792, intron 4 of 6)	17680.0	NM_001013792	432940.0	Mm.309164	NM_001013792	ENSMUSG00000046034	Otulin	C79097|Fam105b|m3Sapc|m7-1Sapc	OTU deubiquitinase with linear linkage specificity	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131136166-4	chr1	131136074	131136274	+	859.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145508, intron 2 of 2)	intron (NM_145508, intron 2 of 2)	2060.0	NM_145508	226419.0	Mm.39299	NM_145508	ENSMUSG00000016526	Dyrk3	BC006704	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3	protein-coding	1.72788895738341	0.733713779279033	0.942059046497264	0.706328730018834	1.29671045824695	1.926746200765	0.721810695719736	1.24636705381607	0.906360306085507	0.536278479689961	0.953323426463389
Merged-chr16-91582697-2	chr16	91582598	91582798	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030018, intron 3 of 6)	intron (NM_030018, intron 3 of 6)	14982.0	NM_030018	77975.0	Mm.290341	NM_030018	ENSMUSG00000022964	Tmem50b	AU015466|AU019872|B230114J08Rik	transmembrane protein 50B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133582083-1	chr4	133581983	133582183	+	1000.0	f1_c57bl6.idr	intron (NM_172876, intron 4 of 6)	B3|SINE|B2	-2290.0	NM_001290742	100210.0	Mm.274001	NM_133884	ENSMUSG00000028848	Gpn2	AI838661|Atpbd1b|R74630	GPN-loop GTPase 2	protein-coding	0.715313529144635	1.89224548250666	0.75277882813381	1.75112586770761	0.718897464546556	0.77406499342399	1.61912932656353	1.66519968195174	-0.404929015059946	0.790603505427534	0.998431161219273
Merged-chr10-86296269-4	chr10	86296018	86296218	+	941.28125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164495, intron 6 of 6)	intron (NM_001164495, intron 6 of 6)	-4294.0	NM_011595	21859.0	Mm.4871	NM_011595	ENSMUSG00000020044	Timp3	Timp-3	tissue inhibitor of metalloproteinase 3	protein-coding	-0.662826441749988	-1.00555184936033	-1.01675512286785	-1.01992432642343	-0.654846858003193	-1.00312405325568	-1.01421894731451	-1.01959449741028	0.0418081237259606	0.989738874530268	1
Merged-chr8-70806716-4	chr8	70806621	70806821	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1728.0	NM_008353	16161.0	Mm.731	NM_008353	ENSMUSG00000000791	Il12rb1	CD212|IL-12R[b]	interleukin 12 receptor, beta 1	protein-coding	0.823282622118488	0.485479926780928	1.49240282227412	0.455266961902428	0.833292656100734	0.489195188169716	2.1538170919542	0.457632846585156	1.08610704646803	0.502431760219797	0.939260869292166
Merged-chr12-32135212-4	chr12	32135106	32135306	+	846.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	73132.0	NM_001146201	30955.0	Mm.101369	NM_020272	ENSMUSG00000020573	Pik3cg	5830428L06Rik|PI3Kgamma|p110gamma	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding	3.7890598097473	3.1363207957303	3.60259716209395	3.50492437301836	2.90429506318628	2.62693622903138	1.64412356763047	3.23230202845765	-1.33899752789755	0.0458367113123925	0.308778557618375
Merged-chr11-75044170-2	chr11	75044070	75044270	+	550.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001002764, intron 12 of 18)	intron (NM_001002764, intron 12 of 18)	21821.0	NR_030454	735274.0		NR_030454	ENSMUSG00000106252	Mir684-1	Mirn684-1	microRNA 684-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-37787611-4	chr15	37787481	37787681	+	835.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359844, intron 1 of 7)	ORR1E|LTR|ERVL-MaLR	4419.0	NM_001170866	52589.0	Mm.283370	NM_134094	ENSMUSG00000051359	Ncald	AI848120|D030020D09Rik|D15Ertd412e	neurocalcin delta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75453780-2	chr11	75453680	75453880	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_138950, exon 1 of 10)	exon (NM_138950, exon 1 of 10)	937.0	NM_138950	192652.0	Mm.340378	NM_138950	ENSMUSG00000045374	Wdr81	BC054822|Gm883|mFLJ00182|nur5	WD repeat domain 81	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-91141740-4	chr10	91141653	91141853	+	976.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17790.0	NM_133668	18674.0	Mm.298	NM_133668	ENSMUSG00000061904	Slc25a3	5730556H19Rik|PTP|Phc	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-117479185-4	chr12	117479080	117479280	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37299.0	NM_175930	217944.0	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding	4.07462043376428	4.31225478939882	3.91009385668234	4.46589061705756	4.37230738590689	4.70931731512099	3.78363089984925	3.66564468975091	-0.0100947244187579	0.98184254457369	0.998431161219273
Merged-chr19-5493338-2	chr19	5493238	5493438	+	889.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_007687, intron 3 of 3)	intron (NM_007687, intron 3 of 3)	2883.0	NM_007687	12631.0	Mm.329655	NM_007687	ENSMUSG00000056201	Cfl1	AA959946|Cof	cofilin 1, non-muscle	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140697467-2	chr5	140697367	140697567	+	904.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347517, intron 2 of 22)	intron (NM_001347517, intron 2 of 22)	4911.0	NM_028833	74239.0	Mm.179704	NM_028833	ENSMUSG00000036555	Iqce	1700028P05Rik|mKIAA1023	IQ motif containing E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-109418325-4	chr4	109418227	109418427	+	940.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145948, intron 2 of 17)	intron (NM_001145948, intron 2 of 17)	2680.0	NM_001145948	230603.0	Mm.33091	NM_153392	ENSMUSG00000028555	Ttc39a	4922503N01Rik	tetratricopeptide repeat domain 39A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-51250367-2	chr3	51250267	51250467	+	676.833313	f1_balb.idr|f1_c57bl6.idr	exon (NM_009834, exon 3 of 3)	exon (NM_009834, exon 3 of 3)	25920.0	NM_009834	12457.0	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-98992781-2	chr6	98992681	98992881	+	797.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001197321, intron 8 of 17)	intron (NM_001197321, intron 8 of 17)	35517.0	NM_001197322	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-125406657-4	chr5	125406557	125406757	+	977.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16640.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-152738005-7	chr2	152737968	152738168	+	972.357117	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010495)	TTS (NM_010495)	1817.0	NM_001355113	15901.0	Mm.444	NM_010495	ENSMUSG00000042745	Id1	AI323524|D2Wsu140e|Idb1|bHLHb24	inhibitor of DNA binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116672836-2	chr11	116672736	116672936	+	822.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_028569)	TTS (NR_028569)	331.0	NR_028569	100216536.0		NR_028569	ENSMUSG00000065640	Snord1c	-	small nucleolar RNA, C/D box 1C	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-13580256-2	chr2	13580156	13580356	+	624.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011701, intron 6 of 8)	MIRb|SINE|MIR	5945.0	NM_011701	22352.0	Mm.268000	NM_011701	ENSMUSG00000026728	Vim	-	vimentin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-97523288-4	chr16	97523203	97523403	+	872.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR9E|LTR|ERVK	-12778.0	NR_003508	17858.0	Mm.14157	NM_013606	ENSMUSG00000023341	Mx2	AI528743|Mx-2	MX dynamin-like GTPase 2	protein-coding	3.04342407063939	1.73696719037339	1.40389713875562	1.84878233032772	3.28407892325442	2.76131096265234	2.86837979593116	2.77801212751102	1.44669064130712	0.0958231653653621	0.480370336234101
Merged-chr11-97041071-1	chr11	97040971	97041171	+	1000.0	f1_c57bl6.idr	promoter-TSS (NM_001357808)	promoter-TSS (NM_001357808)	298.0	NM_027026	69297.0	Mm.250465	NM_027026	ENSMUSG00000020878	Lrrc46	1700006D24Rik	leucine rich repeat containing 46	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-83514457-7	chr17	83514344	83514544	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159529)	promoter-TSS (NM_001159529)	-111.0	NM_001159529	20463.0	Mm.30072	NM_009187	ENSMUSG00000024248	Cox7a2l	COX7AR|COX7RP|EB1|SIG-81|SIG81|Silg81	cytochrome c oxidase subunit VIIa polypeptide 2-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-84922226-2	chr18	84922126	84922326	+	577.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12779.0	NM_015798	50764.0	Mm.28369	NM_015798	ENSMUSG00000034391	Fbxo15	AU019763|Fbx15|ecat3	F-box protein 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-19954157-4	chr3	19954070	19954270	+	975.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2884.0	NM_001276250	12870.0	Mm.13787	NM_007752	ENSMUSG00000003617	Cp	D3Ertd555e	ceruloplasmin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167423143-2	chr2	167423043	167423243	+	734.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001304542, intron 1 of 15)	ID_B1|SINE|B4	1433.0	NM_001304542	77031.0	Mm.278924	NM_148929	ENSMUSG00000039463	Slc9a8	1200006P13Rik|6430709P13Rik|AI182282|NHE-8|NHE8	solute carrier family 9 (sodium/hydrogen exchanger), member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-24281486-3	chr19	24281344	24281544	+	995.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008044)	promoter-TSS (NM_008044)	-858.0	NM_008044	14297.0	Mm.7319	NM_008044	ENSMUSG00000059363	Fxn	FA|FARR|Frda|X25	frataxin	protein-coding	-1.15494470793829	-1.27058668761078	-1.28071119605555	-0.867933662602369	-1.29849590170856	-1.2683926643954	-1.27841922926656	-1.2875391062064	-2.30070480102198	0.49414047531975	1
Merged-chr10-70195937-4	chr10	70195843	70196043	+	713.020813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	-8721.0	NM_001304739	69563.0	Mm.64672	NM_001304739	ENSMUSG00000019933	Mrln	2310015B20Rik|Linc-RAM|Mln	myoregulin	protein-coding	2.00178849875538	0.984499215394233	1.19548367419951	1.16670747244842	2.02031410943124	0.988886618763253	1.6991252494372	2.1345969282388	1.11928180528679	0.370696892461747	0.863727598865104
Merged-chr4-135179172-6	chr4	135179009	135179209	+	723.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58464.0	NM_019732	12399.0	Mm.378894	NM_019732	ENSMUSG00000070691	Runx3	AML2|Cbfa3|Pebp2a3	runt related transcription factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-118480486-3	chr7	118480430	118480630	+	858.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11445.0	NM_001033380	319622.0	Mm.323386	NM_001033380	ENSMUSG00000095115	Itpripl2	C130081G24|E030018N11Rik	inositol 1,4,5-triphosphate receptor interacting protein-like 2	protein-coding	2.28076967018234	2.56078602413979	1.4176899654129	2.15554654292029	2.98684409998752	2.89146794137287	2.37165519703204	2.2986088595074	1.10185096105663	0.194372171398232	0.674631641388253
Merged-chr11-5065285-4	chr11	5065183	5065383	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001190406)	promoter-TSS (NM_001190406)	44.0	NM_144560	78926.0	Mm.44591	NM_030228	ENSMUSG00000034201	Gas2l1	4930500E24Rik|D0Jmb1|Gar22|TU-71.1	growth arrest-specific 2 like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-101957629-1	chr12	101957529	101957729	+	667.0	f0_c57.idr	intron (NM_029705, intron 1 of 10)	intron (NM_029705, intron 1 of 10)	614.0	NM_029705	110616.0	Mm.271914	NM_029705	ENSMUSG00000021189	Atxn3	2210008M02Rik|AI463012|AI647473|ATX3|MJD1|Mjd|Sca3|ataxin-3	ataxin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115709389-4	chr11	115709240	115709440	+	822.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008163)	promoter-TSS (NM_008163)	-743.0	NM_008163	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-90035950-2	chr9	90035850	90036050	+	705.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18317.0	NM_007801	13036.0	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-97667668-3	chr15	97667599	97667799	+	766.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38123.0	NM_028003	71919.0	Mm.12255	NM_028003	ENSMUSG00000022466	Rpap3	2310042P20Rik|D15Ertd682e	RNA polymerase II associated protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55867225-2	chr14	55867125	55867325	+	634.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001040072, intron 5 of 7)	intron (NM_001040072, intron 5 of 7)	13110.0	NM_001040072	277154.0	Mm.319347	NM_001040072	ENSMUSG00000075592	Nynrin	AA409373|C80530|mKIAA1305	NYN domain and retroviral integrase containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-93191483-2	chr13	93191383	93191583	+	781.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_154997, intron 1 of 15)	intron (NR_154997, intron 1 of 15)	934.0	NM_001361536	100715.0	Mm.242865	NM_133905	ENSMUSG00000042167	Papd4	8030446C20Rik|AI649009|GLD-2|Gld2	PAP associated domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-16465685-2	chr5	16465585	16465785	+	690.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-87810.0	NM_001289460	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-121701563-2	chr11	121701463	121701663	+	973.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144797)	promoter-TSS (NM_144797)	-864.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-139158498-1	chr4	139158398	139158598	+	553.0	f0_balb.idr	Intergenic	Intergenic	22157.0	NR_033543	100038595.0	Mm.385206	NR_033543	ENSMUSG00000073739	Gm16287	-	predicted gene 16287	ncRNA	0.129565066386243	0.151214163859014	0.748634453147	0.138701631617662	0.130929253675069	0.813025689954726	0.145725890701832	0.816607499535271	1.21802180054684	0.565701027269316	1
Merged-chr7-64334428-2	chr7	64334328	64334528	+	891.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172742, intron 14 of 15)	intron (NM_172742, intron 14 of 15)	39667.0	NM_177893	330554.0	Mm.236510	NM_177893	ENSMUSG00000033458	Fan1	6030441H18Rik|Mtmr15|mFAN1	FANCD2/FANCI-associated nuclease 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-50255055-2	chr16	50254955	50255155	+	628.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027444, intron 7 of 16)	intron (NM_027444, intron 7 of 16)	177334.0	NM_027444	70508.0	Mm.28940	NM_027444	ENSMUSG00000022641	Bbx	5530401J07Rik|5730403O13Rik	bobby sox HMG box containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106673661-4	chr11	106673572	106673772	+	888.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305158, intron 12 of 14)	intron (NM_001305158, intron 12 of 14)	41609.0	NM_001305158	18613.0	Mm.343951	NM_008816	ENSMUSG00000020717	Pecam1	C85791|Cd31|PECAM-1|Pecam	platelet/endothelial cell adhesion molecule 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-11772461-2	chr19	11772361	11772561	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025606, intron 2 of 3)	Lx5c|LINE|L1	2046.0	NM_025606	94063.0	Mm.203928	NM_025606	ENSMUSG00000024683	Mrpl16	2310039D06Rik	mitochondrial ribosomal protein L16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-127519064-2	chr2	127518957	127519157	+	900.25	f0_c57.idr|f1_c57bl6.idr	intron (NR_110989, intron 1 of 8)	intron (NR_110989, intron 1 of 8)	2335.0	NM_001291005	56461.0	Mm.315292	NM_019789	ENSMUSG00000079056	Kcnip3	4933407H12Rik|AI413860|Csen|DREAM|KChIP3|R74849	Kv channel interacting protein 3, calsenilin	protein-coding	3.16494489026606	3.23063164504461	2.17467459878904	3.38916099555231	1.17585058258114	1.32745895944156	1.57715722046593	2.51364896768976	-2.70736224402195	0.00383233214978576	0.0543502613866779
Merged-chr11-103365614-2	chr11	103365514	103365714	+	775.333374	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_183034, exon 12 of 12)	3' UTR (NM_183034, exon 12 of 12)	-1922.0	NM_001205236	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126976302-2	chr8	126976202	126976402	+	646.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	3136.0	NR_151744	629746.0	Mm.264954	NR_151744		Gm29688	-	predicted gene, 29688	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81514385-4	chr15	81514289	81514489	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48073.0	NM_019712	56438.0	Mm.29405	NM_019712	ENSMUSG00000022400	Rbx1	1500002P15Rik|AA517855|ROC1	ring-box 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-114673123-2	chr5	114673023	114673223	+	705.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019821, intron 4 of 4)	intron (NM_019821, intron 4 of 4)	-14702.0	NM_022017	63873.0	Mm.266450	NM_022017	ENSMUSG00000014158	Trpv4	0610033B08Rik|OTRPC4|Trp12|VR-OAC|VRL-2|VROAC	transient receptor potential cation channel, subfamily V, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-29887501-2	chr17	29887401	29887601	+	763.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081160, exon 1 of 16)	exon (NM_001081160, exon 1 of 16)	381.0	NM_001081160	74762.0	Mm.40901	NM_001081160	ENSMUSG00000043557	Mdga1	1200011I03Rik|GPIM|Mamdc3	MAM domain containing glycosylphosphatidylinositol anchor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-114698065-2	chr6	114697965	114698165	+	866.4166869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253718, intron 10 of 19)	intron (NM_001253718, intron 10 of 19)	54968.0	NM_001253718	74244.0	Mm.275332	NM_028835	ENSMUSG00000030314	Atg7	1810013K23Rik|Agp7|Apg7l|Atg7l|Gm21553	autophagy related 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3946887-2	chr19	3946787	3946987	+	745.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019449, intron 9 of 10)	intron (NM_019449, intron 9 of 10)	11701.0	NM_001161428	54445.0	Mm.262094	NM_019449	ENSMUSG00000036908	Unc93b1	Unc-93B1|Unc93b	unc-93 homolog B1 (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-15946016-4	chr7	15945922	15946122	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133831)	promoter-TSS (NM_133831)	86.0	NM_133831	68077.0	Mm.277634	NM_133831	ENSMUSG00000041560	Nop53	5330430H08Rik|9430097C02Rik|AU041936|AW536441|Gltscr2|PICT-1|R74911	NOP53 ribosome biogenesis factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-45807648-4	chr17	45807535	45807735	+	911.412476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	73129.0	NR_152153	433111.0	Mm.213441	NR_152153	ENSMUSG00000097727	F630040K05Rik	-	RIKEN cDNA F630040K05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-55763314-4	chr4	55763216	55763416	+	925.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-230841.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117599767-2	chr11	117599667	117599867	+	589.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11480.0	NR_015489	78403.0	Mm.212543	NR_015489		2900041M22Rik	-	RIKEN cDNA 2900041M22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-51277448-4	chr3	51277377	51277577	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291063)	promoter-TSS (NM_001291063)	37.0	NM_001291063	69257.0	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-142391085-2	chr5	142390985	142391185	+	789.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER4B|LTR|ERVK	-10412.0	NM_199068	17425.0	Mm.24214	NM_010812	ENSMUSG00000056493	Foxk1	A630048H08Rik|AI463295|Gm10868|Mnf	forkhead box K1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-95166087-4	chr8	95165989	95166189	+	801.80835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23549.0	NM_001145831	16582.0	Mm.378951	NM_010631	ENSMUSG00000031788	Kifc3	AI325457|BB123200	kinesin family member C3	protein-coding	1.60531837317127	1.28121019485255	0.998747251371495	1.3997177170325	2.10118790624453	2.08991789328653	1.00389084252226	2.43842397605915	2.03176700064136	0.0867142272919851	0.452666622563467
Merged-chr1-10826624-2	chr1	10826524	10826724	+	590.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_030645, intron 2 of 3)	Lx2|LINE|L1	39250.0	NR_030645	100124448.0		NR_030645	ENSMUSG00000076948	Mir467e	Mirn467e	microRNA 467e	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-151485577-2	chr5	151485477	151485677	+	644.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	79073.0	NR_131166	100042166.0	Mm.443286	NR_131166	ENSMUSG00000097321	Gm3704	-	predicted gene 3704	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-13109770-4	chr16	13109670	13109870	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015769)	promoter-TSS (NM_015769)	34.0	NM_015769	50505.0	Mm.287837	NM_015769	ENSMUSG00000022545	Ercc4	AI606920|Xpf	excision repair cross-complementing rodent repair deficiency, complementation group 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-48855628-4	chr11	48855516	48855716	+	866.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	15804.0	NM_001355757	15944.0	Mm.29938	NM_008326	ENSMUSG00000046879	Irgm1	Ifggd3|Ifi1|Iigp3|Iipg3|Irgm	immunity-related GTPase family M member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-181234896-2	chr2	181234796	181234996	+	777.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_183162, exon 9 of 19)	exon (NM_183162, exon 9 of 19)	7131.0	NM_183162	229003.0	Mm.315872	NM_183162	ENSMUSG00000027580	Helz2	PDIP1|Pric285|mKIAA1769|mPDIP1	helicase with zinc finger 2, transcriptional coactivator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-53838419-6	chr1	53838373	53838573	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001883, intron 23 of 28)	intron (NM_001001883, intron 23 of 28)	-10951.0	NR_106149	102465783.0		NR_106149	ENSMUSG00000098443	Mir7681	Gm27806|mmu-mir-7681	microRNA 7681	ncRNA	3.12278622229019	2.70595468988378	2.74179602923083	2.24855004720815	3.07927680218688	3.43547991199671	3.07880410425625	2.79058940590468	0.667372629037613	0.316697523595296	0.819851169756118
Merged-chr9-65536876-2	chr9	65536776	65536976	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	43211.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-121547108-2	chr11	121547008	121547208	+	651.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029878, intron 14 of 38)	intron (NM_029878, intron 14 of 38)	-27766.0	NM_178763	319530.0	Mm.11395	NM_178763	ENSMUSG00000039238	Zfp750	A030007D23Rik|Znf750	zinc finger protein 750	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75645446-2	chr11	75645346	75645546	+	754.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008916, exon 8 of 12)	exon (NM_008916, exon 8 of 12)	-6063.0	NM_008659	17913.0	Mm.234502	NM_008659	ENSMUSG00000017774	Myo1c	C80397|MMIb|MYO1E|NMI|mm1beta|myr2	myosin IC	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-37880734-1	chr13	37880634	37880834	+	681.0	f0_balb.idr	intron (NM_001039188, intron 1 of 9)	intron (NM_001039188, intron 1 of 9)	-7700.0	NR_033218	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78573220-4	chr15	78573143	78573343	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009008)	promoter-TSS (NM_009008)	-460.0	NM_009008	19354.0	Mm.1972	NM_009008	ENSMUSG00000033220	Rac2	AI323801|AI452260	Rac family small GTPase 2	protein-coding	1.89634424784435	2.24165362939571	2.29717644802675	2.44455998712209	1.90910890876927	2.25725387329963	2.77748655961977	2.35697495153204	0.329770489328464	0.696196401191073	0.997923870727665
Merged-chr4-126210131-4	chr4	126210043	126210243	+	907.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-7433.0	NM_146153	230753.0	Mm.29813	NM_146153	ENSMUSG00000043962	Thrap3	9330151F09Rik|B230333E16Rik|Trap150	thyroid hormone receptor associated protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-85272383-1	chr1	85272283	85272483	+	630.0	f1_balb.idr	Intergenic	Intergenic	-1817.0	NM_001037909	620078.0	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik	RIKEN cDNA C130026I21 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-149194287-2	chr6	149194187	149194387	+	649.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5575.0	NM_001113424	232566.0	Mm.209147	NM_001113424	ENSMUSG00000068250	Amn1	5830467E07Rik|A230083D09|C730024G19Rik	antagonist of mitotic exit network 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-103025500-2	chr3	103025400	103025600	+	912.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310693, intron 1 of 17)	intron (NM_001310693, intron 1 of 17)	4954.0	NM_144901	229663.0	Mm.277713	NM_144901	ENSMUSG00000068823	Csde1	AA960392|BC016898|D3Jfr1|mKIAA0885|unr	cold shock domain containing E1, RNA binding	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-33652481-5	chr5	33652309	33652509	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001356983)	TTS (NM_001356983)	165.0	NM_001289725	20492.0	Mm.4172	NM_009193	ENSMUSG00000004642	Slbp	-	stem-loop binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133086323-1	chr4	133086223	133086423	+	735.0	f1_balb.idr	Intergenic	Intergenic	-44310.0	NM_153423	242687.0	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	1.10511019245529	1.14986986927254	0.961814871895128	0.594021609521008	0.582345747038482	1.16055537039038	1.44612307611729	0.595454290161513	0.182574403040597	0.908090516647601	0.998431161219273
Merged-chr8-36265419-4	chr8	36265320	36265520	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15904.0	NM_001081150	244421.0	Mm.324032	NM_001081150	ENSMUSG00000039633	Lonrf1	-	LON peptidase N-terminal domain and ring finger 1	protein-coding	0.616357548360853	0.165838522256258	0.15986870559247	0.155261314977434	0.418801391135501	0.167183993102056	0.490539848510559	0.875531856943197	1.53288297460095	0.444892394980934	1
Merged-chr12-85436118-2	chr12	85436018	85436218	+	586.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-37772.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-66844795-4	chr14	66844687	66844887	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009955, intron 3 of 13)	intron (NM_009955, intron 3 of 13)	23813.0	NM_009955	12934.0	Mm.352648	NM_009955	ENSMUSG00000022048	Dpysl2	AI851130|Crmp2|DRP2|Musunc33|TOAD-64|Ulip2	dihydropyrimidinase-like 2	protein-coding	5.3235519998144	5.59375653054079	5.59323589331918	4.49720328538267	4.99639641062251	4.45687757141557	5.19534996789963	4.75143485711263	-0.509835212872796	0.141652940991003	0.587538137592782
Merged-chr14-73122698-4	chr14	73122616	73122816	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19794.0	NM_001170694	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-98821560-2	chr7	98821460	98821660	+	639.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13552.0	NM_001285794	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-103484321-3	chr15	103484222	103484422	+	881.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153505, intron 22 of 30)	intron (NM_153505, intron 22 of 30)	-18712.0	NM_008800	18574.0	Mm.390792	NM_008800	ENSMUSG00000022489	Pde1b	Pde1b1	phosphodiesterase 1B, Ca2+-calmodulin dependent	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-92434188-4	chr2	92434083	92434283	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009963)	promoter-TSS (NM_009963)	-114.0	NM_009963	12953.0	Mm.254181	NM_009963	ENSMUSG00000068742	Cry2	AV006279|D130054K12Rik	cryptochrome 2 (photolyase-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-91591513-2	chr12	91591413	91591613	+	867.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1026.0	NM_175335	83602.0	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-68807924-2	chr11	68807824	68808024	+	720.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175260, intron 34 of 40)	intron (NM_175260, intron 34 of 40)	45207.0	NM_023668	83431.0	Mm.31979	NM_023668	ENSMUSG00000018736	Ndel1	2600006O07Rik|MITAP1|NUDEL|mNudel	nudE neurodevelopment protein 1 like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-88336578-4	chr10	88336474	88336674	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027878, intron 4 of 6)	MER31A|LTR|ERV1	20501.0	NM_027878	71712.0	Mm.35450	NM_027878	ENSMUSG00000020057	Dram1	1200002N14Rik|Dram	DNA-damage regulated autophagy modulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81400099-4	chr15	81399980	81400180	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347075)	promoter-TSS (NM_001347075)	-58.0	NM_177310	321003.0	Mm.390833	NM_177310	ENSMUSG00000022401	Xpnpep3	APP3|E430012M05Rik	X-prolyl aminopeptidase 3, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-113012189-1	chr5	113012089	113012289	+	603.0	f0_balb.idr	intron (NM_001285806, intron 1 of 20)	intron (NM_001285806, intron 1 of 20)	3349.0	NM_001285806	320129.0	Mm.285619	NM_177078	ENSMUSG00000042249	Grk3	4833444A01Rik|AI851927|AW551196|Adrbk-2|Adrbk2|Bark-2	G protein-coupled receptor kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-174048430-4	chr1	174048336	174048536	+	828.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1939.0	NM_146716	258711.0	Mm.377648	NM_146716	ENSMUSG00000047048	Olfr432	MOR123-2	olfactory receptor 432	protein-coding	3.26579758284418	3.93057258256749	4.2081476744257	2.32270529718706	3.05639726891664	3.23093580320029	2.59333994535193	3.21549664901301	-0.889050535771589	0.168319652063739	0.634264819554251
Merged-chr19-6939343-2	chr19	6939243	6939443	+	588.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001177360, exon 2 of 5)	exon (NM_001177360, exon 2 of 5)	1850.0	NM_207220	107173.0	Mm.276555	NM_207220	ENSMUSG00000024958	Gpr137	AI428855	G protein-coupled receptor 137	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-100831308-2	chr13	100831208	100831408	+	702.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_022885, intron 1 of 15)	intron (NM_022885, intron 1 of 15)	2119.0	NM_022885	69048.0	Mm.402215	NM_022885	ENSMUSG00000021629	Slc30a5	1810010K08Rik|AF233321|ZNT5|ZTL1|ZnT-5|Zntl1	solute carrier family 30 (zinc transporter), member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81465261-2	chr15	81465161	81465361	+	565.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-1055.0	NM_019712	56438.0	Mm.29405	NM_019712	ENSMUSG00000022400	Rbx1	1500002P15Rik|AA517855|ROC1	ring-box 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-92752019-4	chr1	92751938	92752138	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-79607.0	NM_016696	14733.0	Mm.297976	NM_016696	ENSMUSG00000034220	Gpc1	AI462976	glypican 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-118374025-4	chr2	118373890	118374090	+	890.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_201367)	promoter-TSS (NM_201367)	-571.0	NM_201367	381413.0	Mm.70979	NM_201367	ENSMUSG00000040133	Gpr176	Gm1012	G protein-coupled receptor 176	protein-coding	2.35672721597824	3.96735293639089	3.70884293983217	0.979171489306585	1.46322161845971	1.08501569084471	1.63851648686732	1.30814572904806	-3.69347157510992	0.000554891869468101	0.0121636893724938
Merged-chr16-17939020-4	chr16	17938932	17939132	+	953.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10813.0	NM_153150	13358.0	Mm.229291	NM_153150	ENSMUSG00000003528	Slc25a1	1300019P08Rik|2610100G11Rik|AI194714|Ctp|Dgsj|Slc20a3	solute carrier family 25 (mitochondrial carrier, citrate transporter), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95494525-3	chr3	95494410	95494610	+	862.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009709, exon 20 of 21)	exon (NM_009709, exon 20 of 21)	-4700.0	NM_007802	13038.0	Mm.272085	NM_007802	ENSMUSG00000028111	Ctsk	AI323530|MMS10-Q|Ms10q|catK	cathepsin K	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97826878-4	chr6	97826779	97826979	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113198, intron 1 of 9)	intron (NM_001113198, intron 1 of 9)	19821.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-84717145-2	chr2	84717045	84717245	+	544.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1981.0	NM_144887	228136.0	Mm.288508	NM_144887	ENSMUSG00000034075	Zdhhc5	1110032A17Rik|AI451382|Zisp	zinc finger, DHHC domain containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-84037918-2	chr3	84037818	84038018	+	728.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172681, intron 2 of 34)	MER20|DNA|hAT-Charlie	2243.0	NM_172681	229473.0	Mm.28838	NM_172681	ENSMUSG00000033767	Tmem131l	D930015E06Rik|Kiaa0922|mKIAA0922	transmembrane 131 like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-53392615-2	chr19	53392515	53392715	+	955.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1981.0	NM_172429	76479.0	Mm.313687	NM_172429	ENSMUSG00000025024	Smndc1	-	survival motor neuron domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-23920936-4	chr1	23920852	23921052	+	710.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357395, intron 1 of 10)	intron (NM_001357395, intron 1 of 10)	1429.0	NM_001357395	98366.0	Mm.329963	NM_028534	ENSMUSG00000026155	Smap1	1700056O10Rik|4921514B13Rik|4921525H11Rik|AI462175	small ArfGAP 1	protein-coding	1.1153822946946	1.28256787413144	0.674132743959619	1.85977459004312	0.834036573447071	0.691659541001254	0.677322462025817	1.63415056758437	-1.00674139530618	0.501381660855999	0.938443375140454
Merged-chr12-3496292-2	chr12	3496192	3496392	+	842.666626	f1_balb.idr|f1_c57bl6.idr	exon (NM_172421, exon 10 of 11)	exon (NM_172421, exon 10 of 11)	69435.0	NM_172421	75302.0	Mm.120475	NM_172421	ENSMUSG00000037486	Asxl2	4930556B16Rik|mKIAA1685	additional sex combs like 2, transcriptional regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-26780776-4	chr10	26780657	26780857	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176837, intron 1 of 14)	intron (NM_176837, intron 1 of 14)	8245.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-3706895-4	chr16	3706809	3707009	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001161790)	TTS (NM_001161790)	11215.0	NM_001161790	54483.0	Mm.143718	NM_019453	ENSMUSG00000022534	Mefv	FMF|TRIM20|pyrin	Mediterranean fever	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153214868-4	chr2	153214755	153214955	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10586.0	NM_198617	241732.0	Mm.277243	NM_198617	ENSMUSG00000074671	Tspyl3	AW212607|Gm36	TSPY-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-103325689-4	chr12	103325566	103325766	+	935.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023049, intron 7 of 9)	CpG	10707.0	NM_001195726	100504156.0	Mm.425749	NM_001195726	ENSMUSG00000096753	Fam181a	EG544888	family with sequence similarity 181, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-118759768-3	chr12	118759659	118759859	+	776.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Plat_L3|LINE|CR1	-86570.0	NM_177082	320145.0	Mm.51682	NM_177082	ENSMUSG00000048562	Sp8	D930049B17Rik|mBtd	trans-acting transcription factor 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-155096881-4	chr1	155096794	155096994	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010500, exon 1 of 1)	3' UTR (NM_010500, exon 1 of 1)	2742.0	NM_010500	15939.0	Mm.12246	NM_010500	ENSMUSG00000056708	Ier5	-	immediate early response 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-3290988-3	chr11	3290919	3291119	+	927.194458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001253691, exon 1 of 5)	exon (NM_001253691, exon 1 of 5)	562.0	NM_019574	56218.0	Mm.275563	NM_019574	ENSMUSG00000020453	Patz1	8430401L15Rik|AI447519|Mazr|Patz|Zfp278	POZ (BTB) and AT hook containing zinc finger 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-115269818-3	chr8	115269720	115269920	+	628.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019573, intron 8 of 8)	intron (NM_019573, intron 8 of 8)	437074.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-119502126-3	chr6	119501991	119502191	+	806.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009525, intron 1 of 4)	intron (NM_009525, intron 1 of 4)	22423.0	NM_133940	101358.0	Mm.125477	NM_133940	ENSMUSG00000030019	Fbxl14	AW322056|Fbx14l	F-box and leucine-rich repeat protein 14	protein-coding	1.55504559015906	1.43684099931597	1.18025802952696	0.910301696204119	1.6884227211577	0.957790914354741	2.67983725711347	1.90030850697449	1.97497861560117	0.102944835220152	0.499648921104929
Merged-chr10-57728515-4	chr10	57728416	57728616	+	938.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039050, intron 4 of 4)	intron (NM_001039050, intron 4 of 4)	-56407.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3855869-2	chr12	3855769	3855969	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007872, intron 3 of 22)	intron (NM_007872, intron 3 of 22)	6375.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-81303932-3	chr7	81303829	81304029	+	895.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008803, intron 8 of 21)	intron (NM_008803, intron 8 of 21)	41305.0	NM_009092	20068.0	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-35039207-2	chr12	35039107	35039307	+	829.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7982.0	NM_001014973	217463.0	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	0.993749938528891	1.38724430011423	0.382154919436369	0.374833558452698	0.675168934068318	0.393647128238864	0.902212191137943	0.376117561905091	-1.31557186307109	0.463834829802434	1
Merged-chr18-46621682-3	chr18	46621573	46621773	+	962.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23969.0	NM_010120	13664.0	Mm.262037	NM_010120	ENSMUSG00000057561	Eif1a	C76390|Ef1a|Eftu|Eif4c|eIF-1A|eIF-4C	eukaryotic translation initiation factor 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-94896552-1	chr8	94896452	94896652	+	540.0	f1_c57bl6.idr	Intergenic	Intergenic	-20240.0	NM_053246	114255.0	Mm.203949	NM_053246	ENSMUSG00000040631	Dok4	-	docking protein 4	protein-coding	1.42622022777446	2.67423609072301	1.87448267491652	1.81736588437352	1.0301931290345	2.10097895596479	2.34979547115278	1.06669548846569	-0.633145718785309	0.580502946231923	0.966599221005409
Merged-chr8-128699794-2	chr8	128699694	128699894	+	579.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010578, intron 1 of 15)	MTD|LTR|ERVL-MaLR	14140.0	NM_010578	16412.0	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-66094079-4	chr5	66093972	66094172	+	900.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139065, intron 2 of 6)	ORR1B1|LTR|ERVL-MaLR	4107.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-41348952-3	chr3	41348875	41349075	+	856.194458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	144224.0	NR_040385	78706.0	Mm.366094	NR_040385	ENSMUSG00000097639	Platr4	C430002E04Rik	pluripotency associated transcript 4	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30801703-3	chr2	30801586	30801786	+	898.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198000)	promoter-TSS (NM_198000)	51.0	NM_198000	73598.0	Mm.34166	NM_198000	ENSMUSG00000044320	1700001O22Rik	1700113K14Rik|4930549G18Rik	RIKEN cDNA 1700001O22 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69655502-4	chr11	69655358	69655558	+	870.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009235, exon 1 of 2)	exon (NM_009235, exon 1 of 2)	421.0	NM_009235	20670.0	Mm.347499	NM_009235	ENSMUSG00000041287	Sox15	-	SRY (sex determining region Y)-box 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96489673-3	chr3	96489574	96489774	+	710.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPEz-int|LTR|ERVK	-35511.0	NM_027126	69585.0	Mm.171314	NM_027126	ENSMUSG00000038403	Hfe2	2310035L15Rik|5230400G09Rik|AI414844|AI789733|DL-M|HJV|Rgmc|hemojuvelin	hemochromatosis type 2 (juvenile)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-21330422-2	chr5	21330322	21330522	+	733.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029195, intron 4 of 18)	intron (NM_029195, intron 4 of 18)	-42251.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-39308771-1	chr8	39308671	39308871	+	1000.0	f0_balb.idr	intron (NR_044988, intron 2 of 3)	intron (NR_044988, intron 2 of 3)	10791.0	NR_044988	621335.0	Mm.208080	NR_044988	ENSMUSG00000109827	Gm6213	EG621335	predicted gene 6213	ncRNA	0.726172057304942	1.2931559650873	1.1058753640159	1.32231793132638	0.72840803223422	1.43440378956328	1.11462447998646	1.33009247183934	0.204963463276192	0.884671733859937	0.998431161219273
Merged-chr8-105303579-4	chr8	105303484	105303684	+	792.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_148952, intron 7 of 9)	intron (NM_148952, intron 7 of 9)	-2017.0	NM_172760	234683.0	Mm.237966	NM_172760	ENSMUSG00000014791	Elmo3	9930107J06|BC058752|CED-12|Ced12	engulfment and cell motility 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-161406622-2	chr1	161406531	161406731	+	605.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009452, intron 1 of 2)	intron (NM_009452, intron 1 of 2)	11193.0	NM_009452	22164.0	Mm.4994	NM_009452	ENSMUSG00000026700	Tnfsf4	Ath-1|Ath1|CD134L|OX-40L|Ox40l|TXGP1|Tnlg2b|Txgp1l|gp34	tumor necrosis factor (ligand) superfamily, member 4	protein-coding	1.61216692835702	1.64054300354666	2.52370775300107	1.03641602999457	2.03098466281596	1.8571576056683	3.31839478540213	1.0415222712829	1.14399358644553	0.304063391813595	0.805768573577736
Merged-chr3-36000682-4	chr3	36000585	36000785	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023644)	promoter-TSS (NM_023644)	-7.0	NM_023644	72039.0	Mm.249016	NM_023644	ENSMUSG00000027709	Mccc1	1810045E08Rik|2310058B18Rik|MCCalpha|Mcca|R75106	methylcrotonoyl-Coenzyme A carboxylase 1 (alpha)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-145628040-4	chr3	145627961	145628161	+	612.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21924.0	NM_010516	16007.0	Mm.1231	NM_010516	ENSMUSG00000028195	Cyr61	AI325051|CCN1|Igfbp10	cysteine rich protein 61	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-100469025-4	chr15	100468929	100469129	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357982)	promoter-TSS (NM_001357982)	18.0	NM_134093	68614.0	Mm.275272	NM_134093	ENSMUSG00000037353	Letmd1	1110019O13Rik|AI593524|BB130465|BB235638|HCCR-2|HCCR1|MCC-32|Mccr	LETM1 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-65991385-4	chr5	65991274	65991474	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027961, intron 4 of 6)	ORR1B1|LTR|ERVL-MaLR	12911.0	NR_027961	231253.0	Mm.436542	NM_177679	ENSMUSG00000054598	9130230L23Rik	-	RIKEN cDNA 9130230L23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-104280596-2	chr9	104280496	104280696	+	938.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17666.0	NM_001163026	235567.0	Mm.217256	NM_001163026	ENSMUSG00000032560	Dnajc13	D030002L11Rik|Gm1124|RME-8|Rme8|mKIAA0678	DnaJ heat shock protein family (Hsp40) member C13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-98034464-4	chr5	98034318	98034518	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3456.0	NM_133738	71914.0	Mm.24842	NM_133738	ENSMUSG00000029338	Antxr2	2310046B19Rik|AW561899|CMG-2|CMG2|cI-35	anthrax toxin receptor 2	protein-coding	3.04751743234817	3.42739522421045	4.03414154962238	3.39639825692297	3.32766414288571	3.80212458217544	3.23470451624841	4.05144233068007	0.186516536948371	0.732659384043519	0.998431161219273
Merged-chr5-66246118-4	chr5	66246017	66246217	+	775.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13781.0	NM_001302833	70918.0	Mm.23166	NM_027602	ENSMUSG00000029206	Nsun7	4921525L17Rik	NOL1/NOP2/Sun domain family, member 7	protein-coding	1.13455054793565	0.782676997404544	1.68038882732179	0.766827247494355	1.14407624870416	0.784702355322721	1.46498590426962	1.20407498472878	0.00293564554997393	0.998428365438504	0.999479715059607
Merged-chr6-115897586-3	chr6	115897487	115897687	+	689.111145	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167763, intron 14 of 28)	intron (NM_001167763, intron 14 of 28)	-34340.0	NM_145383	212541.0	Mm.2965	NM_145383	ENSMUSG00000030324	Rho	Noerg1|Opn2|Ops|RP4	rhodopsin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56242184-4	chr17	56242067	56242267	+	865.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029827)	promoter-TSS (NR_029827)	451.0	NR_155493	320593.0	Mm.125338	NR_155493		A230051N06Rik	-	RIKEN cDNA A230051N06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-148214950-4	chr6	148214860	148215060	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015615, intron 1 of 1)	intron (NR_015615, intron 1 of 1)	-2586.0	NM_001286560	67456.0	Mm.59812	NM_026168	ENSMUSG00000030304	Ergic2	1200009B18Rik|4930572C01Rik|AA408438|Ptx1	ERGIC and golgi 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-66343392-4	chr7	66343310	66343510	+	891.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146191, intron 2 of 33)	intron (NM_146191, intron 2 of 33)	38314.0	NR_106024	102465640.0		NR_106024	ENSMUSG00000098353	Mir7057	Gm27550|mmu-mir-7057	microRNA 7057	ncRNA	2.83942526705877	3.34838441759834	2.90979902062992	1.39201182883099	3.07452727170736	3.2167556116486	1.44279804423423	2.3944333201194	-0.170320284803363	0.851363030652709	0.998431161219273
Merged-chr16-24766582-3	chr16	24766468	24766668	+	934.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 8 of 12)	intron (NM_178665, intron 8 of 12)	44713.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-84468921-2	chr17	84468821	84469021	+	729.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR6-int|LTR|ERV1	-2713.0	NM_183021	240174.0	Mm.246767	NM_177826	ENSMUSG00000024251	Thada	6530405K19|A930021O22|AU019899|BC052885|GITA	thyroid adenoma associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-41278452-2	chr7	41278352	41278552	+	660.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus1|LINE|L1	-5875.0	NM_001033782	434172.0	Mm.247214	NM_001033782	ENSMUSG00000072259	Gm5592	EG434172	predicted gene 5592	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-69201552-4	chr17	69201434	69201634	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355736, intron 1 of 21)	B4A|SINE|B4	42178.0	NM_001355735	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-138191073-2	chr5	138190977	138191177	+	705.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178612, intron 3 of 5)	RSINE1|SINE|B4	-3237.0	NM_177878	330216.0	Mm.19719	NM_177878	ENSMUSG00000049285	Mblac1	-	metallo-beta-lactamase domain containing 1	protein-coding	-0.120903143144671	-0.241322317411046	-0.24523424864329	0.250018569889401	0.196294067960236	-0.240437711319275	-0.0761720120311336	-0.24771458970397	-0.0656275220629831	0.97729905335335	1
Merged-chr4-126228241-4	chr4	126228141	126228341	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25531.0	NM_146153	230753.0	Mm.29813	NM_146153	ENSMUSG00000043962	Thrap3	9330151F09Rik|B230333E16Rik|Trap150	thyroid hormone receptor associated protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-99337699-4	chr13	99337617	99337817	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026873, intron 3 of 9)	MIRb|SINE|MIR	6961.0	NM_026873	68927.0	Mm.276502	NM_026873	ENSMUSG00000021650	Ptcd2	1190005P08Rik	pentatricopeptide repeat domain 2	protein-coding	3.98933757142288	4.48942821704338	3.87456039640624	3.90337389505713	3.96905855299593	4.29959473449537	3.90412532664551	3.71272863365931	-0.137022132836204	0.757983511199688	0.998431161219273
Merged-chr7-141194071-4	chr7	141193980	141194180	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001130443)	promoter-TSS (NM_001130443)	-50.0	NM_001172065	70552.0	Mm.45104	NM_153777	ENSMUSG00000038637	Lrrc56	5730427C23Rik|BB110509|mFLJ00101	leucine rich repeat containing 56	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-70288510-2	chr10	70288410	70288610	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C|LTR|ERVK	43234.0	NM_025807	66859.0	Mm.19325	NM_025807	ENSMUSG00000037762	Slc16a9	1200003C15Rik|4930425B13Rik|AI552636	solute carrier family 16 (monocarboxylic acid transporters), member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-7472781-2	chr10	7472681	7472881	+	942.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029975, intron 1 of 5)	B1_Mus2|SINE|Alu	696.0	NM_029975	77777.0	Mm.442442	NM_029975	ENSMUSG00000079685	Ulbp1	A430108B07Rik|MULT1	UL16 binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-36822663-4	chr19	36822566	36822766	+	849.029175	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A1|LTR|ERVL-MaLR	-11566.0	NM_001163635	74493.0	Mm.249310	NM_001163635	ENSMUSG00000024811	Tnks2	5430432P15Rik|AA517131|AI662480|ARTD6|TNKS-2|Tank2	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-96856123-3	chr7	96856008	96856208	+	978.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011858, intron 24 of 32)	intron (NM_011858, intron 24 of 32)	-54559.0	NR_045874	791381.0	Mm.402112	NR_045874	ENSMUSG00000053049	Gm15413	-	predicted gene 15413	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-80063780-2	chr2	80063687	80063887	+	955.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355141, intron 2 of 15)	MIR|SINE|MIR	-24885.0	NM_001355142	18573.0	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding	1.1561997997139	0.766013364051077	0.953934174505761	1.2234398954819	1.46427837744318	1.16974092845142	0.756489721538982	1.72091269464417	1.24127652335664	0.37266474198094	0.865109408625856
Merged-chr2-59387362-4	chr2	59387260	59387460	+	882.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040510)	promoter-TSS (NR_040510)	-678.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-119978386-4	chr9	119978364	119978564	+	846.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153287, intron 1 of 4)	intron (NM_153287, intron 1 of 4)	4559.0	NM_001357560	215418.0	Mm.491094	NM_153287	ENSMUSG00000032515	Csrnp1	4931429D10Rik|Axud1|CSRNP-1|URAX1|taip-3	cysteine-serine-rich nuclear protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-140566975-4	chr4	140566872	140567072	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001112723, intron 16 of 26)	intron (NM_001112723, intron 16 of 26)	81784.0	NM_001112723	72754.0	Mm.29329	NM_172415	ENSMUSG00000040964	Arhgef10l	2810441C07Rik	Rho guanine nucleotide exchange factor (GEF) 10-like	protein-coding	4.52424220733051	5.14961206766305	4.89823552416873	4.70428164052706	3.85214956076267	3.93844484600579	3.16378029827586	4.04720116717716	-1.34905264733386	0.00107086783355122	0.0205025621281077
Merged-chr2-44990972-2	chr2	44990872	44991072	+	721.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355291, intron 9 of 9)	intron (NM_001355291, intron 9 of 9)	32205.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-58290298-1	chr1	58290198	58290398	+	540.0	f1_balb.idr	intron (NM_001008419, intron 7 of 35)	intron (NM_001008419, intron 7 of 35)	11972.0	NM_001008419	213043.0	Mm.414292	NM_001008419	ENSMUSG00000079554	Aox2	Aoh3|Aox3l1	aldehyde oxidase 2	protein-coding	-0.0977016715383615	-0.00399608531927825	-0.330966865275282	-0.333626488413278	-0.0917596259492191	0.00282314113223398	-0.330203791666453	-0.333162944106642	0.040353244391314	0.986363013599206	1
Merged-chr13-119461999-3	chr13	119461888	119462088	+	871.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113550)	promoter-TSS (NM_001113550)	-771.0	NR_153825	67392.0	Mm.390641	NM_026127	ENSMUSG00000062822	4833420G17Rik	2210017J06Rik|5730533D17Rik|AW107518|C85193	RIKEN cDNA 4833420G17 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-96936964-4	chr15	96936879	96937079	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	83380.0	NM_001358060	69354.0	Mm.250980	NM_027052	ENSMUSG00000022464	Slc38a4	1110012E16Rik|1700012A18Rik|Ata3|mATA3|mNAT3	solute carrier family 38, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-9152478-4	chr13	9152386	9152586	+	833.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172585, intron 11 of 17)	intron (NM_172585, intron 11 of 17)	58605.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-10309765-1	chr3	10309665	10309865	+	548.0	f1_c57bl6.idr	Intergenic	ORR1A2|LTR|ERVL-MaLR	-8582.0	NM_029310	75497.0	Mm.47052	NM_029310	ENSMUSG00000027530	Fabp12	1700008G05Rik	fatty acid binding protein 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95986067-4	chr3	95985992	95986192	+	899.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045872, intron 2 of 2)	intron (NR_045872, intron 2 of 2)	582.0	NR_045872	668224.0	Mm.357766	NR_045872		Gm9054	EG668224	predicted gene 9054	ncRNA	2.49446795605316	2.68459069717853	2.59378929477119	2.3991204483293	2.41030495117581	1.83887380102337	3.48625925734039	2.83581159737632	0.491797595470423	0.528457083954973	0.949209944897898
Merged-chr1-40115478-2	chr1	40115378	40115578	+	770.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010555, intron 5 of 8)	intron (NM_010555, intron 5 of 8)	29385.0	NM_001360800	16178.0	Mm.1349	NM_010555	ENSMUSG00000026073	Il1r2	CD121b|Il1r-2	interleukin 1 receptor, type II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-102685882-2	chr2	102685755	102685955	+	608.666626	f0_balb.idr|f1_balb.idr	intron (NM_001077514, intron 1 of 10)	intron (NM_001077514, intron 1 of 10)	-20583.0	NM_011393	20511.0	Mm.267547	NM_011393	ENSMUSG00000005089	Slc1a2	1700091C19Rik|2900019G14Rik|AI159670|Eaat2|GLT-1|GLT1|MGLT1	solute carrier family 1 (glial high affinity glutamate transporter), member 2	protein-coding	1.29347555476081	1.63324365716695	1.74759088470387	1.35034003991051	2.07081368955012	2.33710570908092	1.59238297611683	2.57573708568731	1.98637177100952	0.0527718305295446	0.336308298172881
Merged-chr15-62047182-2	chr15	62047082	62047282	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_132746, intron 1 of 6)	ID4_|SINE|ID	7925.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-17638773-2	chr18	17638673	17638873	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57783.0	NR_045374	75162.0	Mm.60874	NR_045374		4930545E07Rik	-	RIKEN cDNA 4930545E07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-120858858-2	chr4	120858756	120858956	+	591.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_182929, intron 1 of 7)	intron (NM_182929, intron 1 of 7)	4057.0	NM_182929	242662.0	Mm.192502	NM_182929	ENSMUSG00000032890	Rims3	A730060M23Rik|Nim3|Rim3|mKIAA0237	regulating synaptic membrane exocytosis 3	protein-coding	1.95899871523915	2.02628561987299	1.9519744223736	1.21525121757727	1.89430065048028	1.0422412283567	1.02277870360373	1.54921867522144	-1.20430259269186	0.317943036654957	0.8209499039712
Merged-chr6-87916147-4	chr6	87916053	87916253	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173737, intron 2 of 6)	intron (NM_173737, intron 2 of 6)	2177.0	NM_173737	232210.0	Mm.246241	NM_173737	ENSMUSG00000030060	Hmces	8430410A17Rik|C85376	5-hydroxymethylcytosine (hmC) binding, ES cell specific	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-59395526-8	chr2	59395420	59395620	+	997.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13C1|LTR|ERVK	-8838.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126616030-4	chr8	126615917	126616117	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22581.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-3165576-3	chr11	3165511	3165711	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_030207, exon 8 of 33)	exon (NM_030207, exon 8 of 33)	27852.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-86906547-4	chr12	86906367	86906567	+	990.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21653.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76518366-2	chr15	76518266	76518466	+	810.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_130893, exon 2 of 2)	3' UTR (NM_130893, exon 2 of 2)	3763.0	NM_130893	170729.0	Mm.218747	NM_130893	ENSMUSG00000048385	Scrt1	-	scratch family zinc finger 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-122571482-4	chr6	122571374	122571574	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17665.0	NM_009645	11628.0	Mm.391503	NM_009645	ENSMUSG00000040627	Aicda	Aid|Arp2	activation-induced cytidine deaminase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19229414-2	chr7	19229314	19229514	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_207525, intron 1 of 1)	intron (NM_207525, intron 1 of 1)	1025.0	NM_207525	403187.0	Mm.239583	NM_207525	ENSMUSG00000052214	Opa3	D630048P19Rik|Gm1425|Gm472	optic atrophy 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-8355785-3	chr5	8355686	8355886	+	827.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001007220, intron 2 of 28)	RSINE1|SINE|B4	12374.0	NM_001007221	11496.0	Mm.275895	NM_001007220	ENSMUSG00000040537	Adam22	2900022I03Rik|AI854032|MDC2	a disintegrin and metallopeptidase domain 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-45628281-2	chr17	45628181	45628381	+	545.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26179.0	NM_001177469	653016.0	Mm.45676	NM_001177468	ENSMUSG00000079471	Mymx	EG653016|Esgp|Gm7325|minion|myomerger	myomixer, myoblast fusion factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30587859-2	chr7	30587759	30587959	+	836.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_029274, intron 1 of 36)	intron (NM_029274, intron 1 of 36)	867.0	NM_001290573	75410.0	Mm.168688	NM_029274	ENSMUSG00000006307	Kmt2b	2610014H22Rik|Mll2|Wbp7|mKIAA0304	lysine (K)-specific methyltransferase 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-8020112-4	chr19	8020054	8020254	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54127.0	NM_001361980	171405.0	Mm.326517	NM_134256	ENSMUSG00000067656	Slc22a27	OAT6-L|OAT6-S|Oat9	solute carrier family 22, member 27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166697484-4	chr2	166697388	166697588	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	16344.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-93248868-3	chr13	93248765	93248965	+	954.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54892.0	NM_147176	26556.0	Mm.37533	NM_011982	ENSMUSG00000007617	Homer1	PSD-Zip45|SYN47|Ves-1|homer-1|vesl-1	homer scaffolding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91885683-2	chr16	91885583	91885783	+	804.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010587, intron 28 of 38)	intron (NM_010587, intron 28 of 38)	45947.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45744575-4	chr7	45744471	45744671	+	902.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017465, intron 1 of 6)	intron (NM_017465, intron 1 of 6)	-2093.0	NM_001360784	54200.0	Mm.271634	NM_017465	ENSMUSG00000003271	Sult2b1	AI326997|BB173635|ST2B1|SULT2B	sulfotransferase family, cytosolic, 2B, member 1	protein-coding	0.747069357853223	0.199805504447765	0.193414573873436	0.912705460440206	0.329922345648768	0.20124452133653	0.194825170315438	0.624534463039869	-1.36255405360996	0.492297799288662	1
Merged-chr15-80250900-1	chr15	80250800	80251000	+	619.0	f1_c57bl6.idr	3' UTR (NM_178719, exon 6 of 6)	3' UTR (NM_178719, exon 6 of 6)	-4284.0	NM_001287180	11911.0	Mm.641	NM_009716	ENSMUSG00000042406	Atf4	Atf-4|C/ATF|CREB2|TAXREB67	activating transcription factor 4	protein-coding	1.84350725887932	1.1066461560394	1.21550221564633	0.861337889856616	1.59581042286908	0.685671510574795	0.671945777338006	0.660008114769526	-1.23856389343377	0.412931564624748	0.894933061362207
Merged-chr13-63573576-1	chr13	63573476	63573676	+	556.0	f0_balb.idr	promoter-TSS (NM_001328514)	promoter-TSS (NM_001328514)	-116.0	NM_001328514	19206.0	Mm.228798	NM_008957	ENSMUSG00000021466	Ptch1	A230106A15Rik|Ptc|Ptc1|Ptch|mes|wig	patched 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-99511923-4	chr12	99511822	99512022	+	964.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51919.0	NR_136760	102639404.0	Mm.396324	NR_136760	ENSMUSG00000097917	Gm26839	-	predicted gene, 26839	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-94189065-2	chr8	94188965	94189165	+	570.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9976.0	NM_013602	17748.0	Mm.192991	NM_013602	ENSMUSG00000031765	Mt1	MT-I|Mt-1	metallothionein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-73193306-4	chr11	73193216	73193416	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357891, intron 3 of 11)	intron (NM_001357891, intron 3 of 11)	5703.0	NM_031251	83429.0	Mm.259852	NM_031251	ENSMUSG00000005949	Ctns	AI195360|AW049661	cystinosis, nephropathic	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-4497464-2	chr7	4497364	4497564	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_029834, exon 2 of 22)	exon (NM_029834, exon 2 of 22)	4216.0	NM_029834	232807.0	Mm.360391	NM_029834	ENSMUSG00000019254	Ppp1r12c	2410197A17Rik|AI839747|B430101M08|Mbs85	protein phosphatase 1, regulatory (inhibitor) subunit 12C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-104240981-1	chr7	104240881	104241081	+	624.0	f1_c57bl6.idr	Intergenic	Intergenic	-3476.0	NM_001357679	94094.0	Mm.326945	NM_030684	ENSMUSG00000056144	Trim34a	Trim34|Trim34-1	tripartite motif-containing 34A	protein-coding	-0.645416232211692	-0.884889443121497	-0.891701928695103	-0.893692749145351	-0.758591294065144	-0.88234348775387	-0.891131237213429	-0.484024785826157	1.04596758978027	0.720676297703784	1
Merged-chr15-66810248-4	chr15	66810142	66810342	+	846.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029841, intron 1 of 7)	intron (NM_001029841, intron 1 of 7)	21587.0	NM_001029841	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-34229570-4	chr7	34229504	34229704	+	878.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008155, intron 1 of 17)	intron (NM_008155, intron 1 of 17)	732.0	NM_008155	14751.0	Mm.589	NM_008155	ENSMUSG00000036427	Gpi1	Amf|Gpi|Gpi-1|Gpi-1r|Gpi-1s|Gpi-1t|Gpi1-r|Gpi1-s|Gpi1-t|Gpi1s|MF|NK|NK/GPI|Nlk|Org|Pgi|Phi	glucose phosphate isomerase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-113222934-2	chr12	113222834	113223034	+	885.916626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37031.0	NM_153776	69195.0	Mm.313244	NM_153776	ENSMUSG00000049036	Tmem121	2410008J05Rik|Hole	transmembrane protein 121	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-50378101-4	chr6	50377861	50378061	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163645, intron 2 of 21)	L1MB1|LINE|L1	4876.0	NM_027881	71720.0	Mm.44153	NM_027881	ENSMUSG00000029822	Osbpl3	1200014M06Rik|6720421I08Rik|A530055M08|ORP-3|ORP3|OSBP3	oxysterol binding protein-like 3	protein-coding	4.57492254797615	4.12274198647329	4.76584369435655	4.68424472715012	3.47211130394276	2.55380361808388	5.11060066234732	4.25903715921516	-0.502882737717403	0.342000935659985	0.843149430009966
Merged-chr10-4394115-3	chr10	4393942	4394142	+	966.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur3|SINE|Alu	-5934.0	NM_001033466	381990.0	Mm.262466	NM_001033466	ENSMUSG00000075327	Zbtb2	Gm1103	zinc finger and BTB domain containing 2	protein-coding	-1.5065962494259	-1.47470757627001	-1.48435097423925	-1.49227234845524	-1.3534877722809	-1.47261781170168	-1.17869857100642	-1.49085442625788	2.04136603658932	0.554349398807351	1
Merged-chr9-14058456-2	chr9	14058356	14058556	+	900.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-217845.0	NM_030261	75747.0	Mm.325126	NM_030261	ENSMUSG00000032009	Sesn3	5630400E15Rik|BC003348|SEST3	sestrin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-38189675-4	chr7	38189553	38189753	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085385, intron 2 of 3)	intron (NM_001085385, intron 2 of 3)	5866.0	NM_028166	72244.0	Mm.187554	NM_028166		1600014C10Rik	AI428873	RIKEN cDNA 1600014C10 gene	protein-coding	4.23194050586124	4.26965484445233	4.64620810900567	3.38657070539786	4.2646737279896	4.77704860733968	4.34047920032459	3.97496014612943	0.21053679007737	0.633040129124267	0.982309295037889
Merged-chr2-153878106-2	chr2	153878006	153878206	+	618.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025631, intron 2 of 15)	intron (NM_025631, intron 2 of 15)	3061.0	NM_025631	66557.0	Mm.46448	NM_025631	ENSMUSG00000027481	Bpifb2	2310034L21Rik|2310069A01Rik|AV089125|Bpil1|LPLUNC2|RYSR	BPI fold containing family B, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-149426622-4	chr4	149426414	149426614	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_022022, exon 1 of 27)	5' UTR (NM_022022, exon 1 of 27)	117.0	NM_022022	63958.0	Mm.415260	NM_022022	ENSMUSG00000028960	Ube4b	4930551I19Rik|4933406G05Rik|AU014668|D4Bwg0973e|UFD2|UFD2a|Ufd2p|mKIAA0684	ubiquitination factor E4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-35498968-4	chr18	35498845	35499045	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030749)	promoter-TSS (NM_030749)	-20.0	NM_030749	81500.0	Mm.291482	NM_030749	ENSMUSG00000024357	Sil1	1810057E01Rik|AI042831|wz	endoplasmic reticulum chaperone SIL1 homolog (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-14132041-4	chr16	14131934	14132134	+	973.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081154, intron 15 of 26)	intron (NM_001081154, intron 15 of 26)	27240.0	NM_001081154	223989.0	Mm.85442	NM_001081154	ENSMUSG00000060657	Marf1	4921513D23Rik|BC031575|C87306|E030019O05|Lkap|mKIAA0430	meiosis regulator and mRNA stability 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72139717-4	chr6	72139623	72139823	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001035228, intron 3 of 6)	intron (NM_001035228, intron 3 of 6)	-16526.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-26325960-3	chr2	26325872	26326072	+	682.861084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355575, intron 7 of 13)	intron (NM_001355575, intron 7 of 13)	6202.0	NM_001199147	67839.0	Mm.266611	NM_153410	ENSMUSG00000026930	Gpsm1	1810037C22Rik|AW107933|Ags3	G-protein signalling modulator 1 (AGS3-like, C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-21127580-4	chr19	21127485	21127685	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22875.0	NR_126458	75354.0	Mm.243873	NR_126458		4930554I06Rik	-	RIKEN cDNA 4930554I06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-35109897-2	chr2	35109797	35109997	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_012018, intron 1 of 43)	intron (NM_012018, intron 1 of 43)	405.0	NM_012018	26920.0	Mm.231332	NM_012018	ENSMUSG00000057110	Cntrl	6720467O09Rik|AA968343|Cep1|Cep110|IB3/5|Ma2a8|b2b1468.1Clo|b2b1468Clo	centriolin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-75473168-2	chr10	75473068	75473268	+	752.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	23658.0	NR_045841	71125.0	Mm.399516	NR_045841		4933407G14Rik	-	RIKEN cDNA 4933407G14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-35728120-4	chr5	35728033	35728233	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359895, intron 1 of 17)	intron (NM_001359895, intron 1 of 17)	1143.0	NM_194344	231147.0	Mm.290429	NM_194344	ENSMUSG00000036553	Sh3tc1	4631428G15|BC024909	SH3 domain and tetratricopeptide repeats 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-61764959-3	chr11	61764853	61765053	+	890.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-2865.0	NM_001164243	212627.0	Mm.27703	NM_144806	ENSMUSG00000020528	Prpsap2	A230054F23Rik	phosphoribosyl pyrophosphate synthetase-associated protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-96818516-2	chr15	96818416	96818616	+	679.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-118788.0	NM_175121	67760.0	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-26476122-3	chr14	26476016	26476216	+	692.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310445, intron 2 of 22)	intron (NM_001310445, intron 2 of 22)	58508.0	NM_032008	83997.0	Mm.36769	NM_032008	ENSMUSG00000021870	Slmap	D330001L02Rik|Miranda|Slap|mKIAA1601	sarcolemma associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-121009979-4	chr4	121009892	121010092	+	915.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133716, intron 1 of 9)	L2a|LINE|L2	7255.0	NM_133716	69780.0	Mm.271819	NM_133716	ENSMUSG00000032870	Smap2	1810031K02Rik|AA408614|Smap1l	small ArfGAP 2	protein-coding	-0.101450510605478	0.487129907185062	-0.234592997147018	0.064570102742781	-0.243100350701113	-0.032520309005209	-0.233584508548519	-0.23750365892534	-2.80353385376741	0.213763566883734	1
Merged-chr11-120624485-3	chr11	120624376	120624576	+	905.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_105901)	TTS (NR_105901)	400.0	NR_105901	102465565.0		NR_105901	ENSMUSG00000098282	Mir6936	Gm27574|mmu-mir-6936	microRNA 6936	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111386714-4	chr12	111386598	111386798	+	929.758301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8980.0	NM_183016	217866.0	Mm.27397	NM_183016	ENSMUSG00000021279	Cdc42bpb	MRCKb	CDC42 binding protein kinase beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25436872-4	chr7	25436784	25436984	+	855.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015569, intron 4 of 6)	intron (NR_015569, intron 4 of 6)	-23998.0	NM_153576	232983.0	Mm.10545	NM_153576	ENSMUSG00000060188	Cxcl17	VCC-1|Vcc1	chemokine (C-X-C motif) ligand 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-29007949-3	chr7	29007836	29008036	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009109, intron 101 of 105)	PB1D9|SINE|Alu	25082.0	NM_008279	26411.0	Mm.148278	NM_008279	ENSMUSG00000037337	Map4k1	Hpk1|mHPK1	mitogen-activated protein kinase kinase kinase kinase 1	protein-coding	2.87404546616284	3.35501804453413	1.54842223156441	1.78198535497461	3.67101974915082	4.24893170513469	2.94122848739832	4.13264827731184	1.96549884690543	0.00630418390845986	0.0792846944797709
Merged-chr7-100234337-2	chr7	100234237	100234437	+	835.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027629, intron 1 of 13)	RMER15|LTR|ERVL	6730.0	NM_027629	70974.0	Mm.440524	NM_027629	ENSMUSG00000030729	Pgm2l1	4931406N15Rik|AI553438|BM32A	phosphoglucomutase 2-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-139233902-4	chr7	139233790	139233990	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027164, intron 8 of 10)	intron (NM_027164, intron 8 of 10)	-14592.0	NM_001033206	101631.0	Mm.334300	NM_001033206	ENSMUSG00000060260	Pwwp2b	AI594893|D7Ertd517e|D930023J19Rik|Pwwp2	PWWP domain containing 2B	protein-coding	1.4671731502793	2.13243665094348	2.05158394594634	3.44956158913384	3.01396023040318	1.93861754757037	1.62380526476141	3.70259113945557	0.589302391154856	0.526463404839674	0.94877971795044
Merged-chr2-26935170-2	chr2	26935070	26935270	+	544.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198628, intron 1 of 18)	intron (NM_198628, intron 1 of 18)	1101.0	NM_198628	279029.0	Mm.330079	NM_198628	ENSMUSG00000049897	Stkld1	Gm711|Sgk071	serine/threonine kinase-like domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-61497806-4	chr11	61497704	61497904	+	692.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER4B|LTR|ERVK	-3538.0	NM_001291034	23939.0	Mm.38172	NM_011841	ENSMUSG00000001034	Mapk7	BMK-1|BMK1|ERK-5|ERK5|Erk5-T|PRKM7|b2b2346Clo	mitogen-activated protein kinase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-148550105-2	chr5	148550005	148550205	+	549.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359199, intron 3 of 6)	intron (NM_001359199, intron 3 of 6)	1568.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	0.957742493981429	0.62091601098803	0.613761094777489	1.35913997208585	0.857911321695128	0.622535578403679	1.17019554725851	1.02210001266686	-0.0393831499722136	0.980365821556799	1
Merged-chr4-132777021-3	chr4	132776959	132777159	+	791.133362	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011284, intron 8 of 8)	(TG)n|Simple_repeat|Simple_repeat	8699.0	NM_011284	19891.0	Mm.2870	NM_011284	ENSMUSG00000028884	Rpa2	AA409079|AI325195|AU020965|RPA34|Rf-A2	replication protein A2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-134770037-2	chr4	134769937	134770137	+	945.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2033.0	NM_145554	100017.0	Mm.27486	NM_145554	ENSMUSG00000037295	Ldlrap1	AA691260|ARH2|Arh|Arh1|FHCB1|FHCB2	low density lipoprotein receptor adaptor protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-17810577-2	chr6	17810477	17810677	+	591.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_022332, intron 1 of 15)	intron (NM_022332, intron 1 of 15)	61407.0	NM_001083315	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-71166960-4	chr6	71166854	71167054	+	808.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22574.0	NM_178413	232078.0	Mm.37547	NM_178413	ENSMUSG00000054474	Thnsl2	BC051244|TSH2	threonine synthase-like 2 (bacterial)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-64121079-2	chr9	64120979	64121179	+	824.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145835, intron 5 of 13)	intron (NM_145835, intron 5 of 13)	3932.0	NM_145835	235435.0	Mm.436581	NM_145835	ENSMUSG00000032401	Lctl	E130104I05Rik|KLPH	lactase-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28437897-2	chr7	28437797	28437997	+	927.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290550, intron 1 of 5)	B1_Mus2|SINE|Alu	450.0	NM_001290550	63986.0	Mm.194536	NM_022024	ENSMUSG00000060791	Gmfg	0610039G16Rik|2310057N07Rik|AI324845	glia maturation factor, gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-57297114-1	chr12	57297014	57297214	+	622.0	f0_balb.idr	intron (NM_001164370, intron 1 of 9)	intron (NM_001164370, intron 1 of 9)	66689.0	NM_001164370	73490.0	Mm.268180	NM_001164370	ENSMUSG00000047022	Mipol1	1700081O04Rik|6030439O22Rik|AU021838|AW536152|D12Ertd19e	mirror-image polydactyly 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-62821994-4	chr11	62821915	62822115	+	748.979187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053169, intron 1 of 5)	intron (NM_053169, intron 1 of 5)	1762.0	NM_053169	94092.0	Mm.117087	NM_053169	ENSMUSG00000047821	Trim16	9130006M08Rik|AI482483|EBBP	tripartite motif-containing 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-11588344-4	chr19	11588239	11588439	+	800.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026835, intron 5 of 6)	intron (NM_026835, intron 5 of 6)	16465.0	NM_026835	68774.0	Mm.290390	NM_026835	ENSMUSG00000024679	Ms4a6d	1110058E16Rik|AI447446|Ms4a11	membrane-spanning 4-domains, subfamily A, member 6D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-74702481-3	chr1	74702359	74702559	+	905.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB5|LINE|L1	-11076.0	NM_024264	104086.0	Mm.85083	NM_024264	ENSMUSG00000026170	Cyp27a1	1300013A03Rik|Cyp27	cytochrome P450, family 27, subfamily a, polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-97994228-4	chr3	97994135	97994335	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19303.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3647223-4	chr4	3647133	3647333	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9273.0	NR_040643	70143.0	Mm.417835	NR_040643	ENSMUSG00000085394	2210414B05Rik	-	RIKEN cDNA 2210414B05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-67372858-4	chr7	67372768	67372968	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291191)	promoter-TSS (NM_001291191)	-10.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-31215724-3	chr6	31215646	31215846	+	884.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110469, intron 1 of 3)	intron (NR_110469, intron 1 of 3)	2728.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107555282-4	chr9	107555188	107555388	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019713, intron 1 of 4)	intron (NM_019713, intron 1 of 4)	705.0	NM_019713	56289.0	Mm.12091	NM_019713	ENSMUSG00000010067	Rassf1	123F2|AA536941|AU044980|NORE2A|RDA32|REH3P21|Rassf1A|Rassf1B|Rassf1C	Ras association (RalGDS/AF-6) domain family member 1	protein-coding	4.69042539999485	4.28356764012733	4.47853374448406	3.67255954514804	4.87211442446456	3.944580886082	3.97018810856326	4.43066178762297	0.0484490403830871	0.911833117802207	0.998431161219273
Merged-chr8-123208209-1	chr8	123208109	123208309	+	564.0	f1_c57bl6.idr	intron (NM_145606, intron 3 of 6)	intron (NM_145606, intron 3 of 6)	4579.0	NM_145606	234852.0	Mm.41596	NM_145606	ENSMUSG00000000743	Chmp1a	2900018H07Rik|Pcoln3	charged multivesicular body protein 1A	protein-coding	-0.461448394414601	-0.45181524673517	-0.294696171259481	-0.0709633368635786	-0.114686566798981	-0.451095001829176	-0.45429638927835	-0.306596349355696	-0.157365946867688	0.948907388411901	1
Merged-chr8-105288676-2	chr8	105288576	105288776	+	786.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166394, intron 1 of 6)	intron (NM_001166394, intron 1 of 6)	852.0	NM_001166394	74356.0	Mm.204876	NM_028888	ENSMUSG00000014837	4931428F04Rik	AI426165|Kiaa0895l	RIKEN cDNA 4931428F04 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70290087-2	chr14	70289987	70290187	+	615.700012	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008915)	promoter-TSS (NM_008915)	-590.0	NM_001304992	19057.0	Mm.439683	NM_008915	ENSMUSG00000022092	Ppp3cc	Calnc|PP2BA gamma	protein phosphatase 3, catalytic subunit, gamma isoform	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81484189-4	chr10	81484114	81484314	+	934.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1505.0	NM_001311124	319586.0	Mm.152689	NM_176954	ENSMUSG00000034818	Celf5	4930565A21Rik|Brunol5	CUGBP, Elav-like family member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-73160499-2	chr13	73160399	73160599	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	68601.0	NR_126459	75361.0	Mm.385732	NR_126459		4930555K05Rik	-	RIKEN cDNA 4930555K05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-110107408-1	chr11	110107308	110107508	+	557.0	f1_balb.idr	intron (NM_147220, intron 35 of 38)	intron (NM_147220, intron 35 of 38)	-11471.0	NM_153145	217258.0	Mm.344148	NM_153145	ENSMUSG00000041828	Abca8a	-	ATP-binding cassette, sub-family A (ABC1), member 8a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-151572048-4	chr1	151571952	151572152	+	967.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022018, intron 1 of 13)	intron (NM_022018, intron 1 of 13)	679.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-66685317-1	chr15	66685217	66685417	+	582.0	f0_c57.idr	exon (NM_009375, exon 11 of 48)	exon (NM_009375, exon 11 of 48)	14547.0	NM_009375	21819.0	Mm.441333	NM_009375	ENSMUSG00000053469	Tg	Tgn|cog	thyroglobulin	protein-coding	0.32496294987648	0.000593120914919729	-0.179983216663296	-0.0336915651690654	-0.0548898783210036	-0.175187259420225	0.124992359237327	-0.182460649468619	-1.04817580128916	0.626383991259515	1
Merged-chr2-101982214-4	chr2	101982090	101982290	+	819.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178886, intron 4 of 5)	intron (NM_178886, intron 4 of 5)	95928.0	NM_029635	76501.0	Mm.330424	NM_029635	ENSMUSG00000027163	Commd9	1810029F08Rik|AA409293	COMM domain containing 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-120116472-4	chr5	120116366	120116566	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028762)	promoter-TSS (NM_028762)	-47.0	NM_028762	74111.0	Mm.41022	NM_028762	ENSMUSG00000029594	Rbm19	1200009A02Rik|AV302714|NPO	RNA binding motif protein 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-76777807-3	chr11	76777703	76777903	+	766.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007754, exon 21 of 21)	3' UTR (NM_007754, exon 21 of 21)	-14225.0	NM_001356321	53334.0	Mm.20931	NM_016810	ENSMUSG00000010392	Gosr1	AI414660|AI426320|BB145494|GOS-28|GOSRI|GS28	golgi SNAP receptor complex member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27825707-3	chr17	27825611	27825811	+	916.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER4B|LTR|ERVK	-5169.0	NM_001271511	224647.0	Mm.196577	NM_001033279	ENSMUSG00000056692	D17Wsu92e	AU020189|C030010A15|C80239	DNA segment, Chr 17, Wayne State University 92, expressed	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-19626265-2	chr2	19626137	19626337	+	552.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	31660.0	NR_033642	100041244.0	Mm.407223	NR_033642		Gm3230	-	predicted gene 3230	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-90211918-2	chr3	90211807	90212007	+	712.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_027015)	TTS (NM_027015)	1740.0	NM_001190258	100043813.0	Mm.270283	NM_001190258	ENSMUSG00000050621	Rps27rt	Gm9846|Rps27l2	ribosomal protein S27, retrogene	protein-coding	-0.0920502743130561	-0.0771282610458183	0.363450943377577	-0.085796469031536	0.379991388966886	-0.0760236870426883	0.485584420120118	-0.0851377258227576	1.29023020318346	0.579422010011014	1
Merged-chr14-18240510-2	chr14	18240462	18240662	+	814.650024	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1456.0	NM_011584	353187.0	Mm.26587	NM_011584	ENSMUSG00000021775	Nr1d2	RVR|Rev-erb	nuclear receptor subfamily 1, group D, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-95881065-4	chr5	95880929	95881129	+	881.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-75910.0	NM_018866	55985.0	Mm.10116	NM_018866	ENSMUSG00000023078	Cxcl13	4631412M08Rik|ANGIE2|Angie|BCA-1|BLC|BLR1L|Scyb13	chemokine (C-X-C motif) ligand 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-13206995-3	chr1	13206865	13207065	+	940.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008678, intron 4 of 22)	intron (NM_008678, intron 4 of 22)	-79802.0	NM_001081209	383491.0	Mm.309380	NM_001081209	ENSMUSG00000042414	Prdm14	-	PR domain containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-100022724-4	chr12	100022614	100022814	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164426, intron 2 of 2)	intron (NM_001164426, intron 2 of 2)	58215.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150025795-2	chr4	150025677	150025877	+	565.5	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-16754.0	NM_173371	100198.0	Mm.22183	NM_173371	ENSMUSG00000028980	H6pd	AI785303|G6pd1|Gpd-1|Gpd1	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	protein-coding	2.13988933049836	1.38165651755572	1.53084728669516	1.31495101203515	2.0818302609241	2.25314572467957	1.84189262881526	1.32015688096553	0.796336941112509	0.458252893100305	0.919570891419578
Merged-chr5-124354800-4	chr5	124354718	124354918	+	846.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013812)	promoter-TSS (NM_013812)	-190.0	NM_013812	13445.0	Mm.391838	NM_013812	ENSMUSG00000029394	Cdk2ap1	Apc10|Cdkap1|DORC1|Doc1|ST19|doc-1|p12	CDK2 (cyclin-dependent kinase 2)-associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-48264856-4	chr17	48264739	48264939	+	834.633301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172623, exon 2 of 6)	exon (NM_172623, exon 2 of 6)	544.0	NM_001163796	224840.0	Mm.131234	NM_172623	ENSMUSG00000051682	Treml4	5031403H21Rik|BB137214|IDCP1|TLT-4|TLT4|Treml3	triggering receptor expressed on myeloid cells-like 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-73255988-5	chr5	73255840	73256040	+	864.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028194, intron 1 of 62)	CpG	678.0	NM_028194	72313.0	Mm.260594	NM_028194	ENSMUSG00000070733	Fryl	2010313D22Rik|2310004H21Rik|2510002A14Rik|9030227G01Rik|mKIAA0826	FRY like transcription coactivator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-148492443-2	chr5	148492343	148492543	+	751.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR31C_MM|LTR|ERVK	59230.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-57216612-3	chr16	57216518	57216718	+	675.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026254, intron 2 of 17)	intron (NM_026254, intron 2 of 17)	14848.0	NM_026254	67581.0	Mm.257819	NM_026254	ENSMUSG00000022749	Tbc1d23	4930451A13Rik|AU015720|AU043671|AU043778|D030022P07Rik|W51689	TBC1 domain family, member 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-121398883-2	chr10	121398737	121398937	+	801.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33747.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-111271736-4	chr9	111271641	111271841	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026810)	promoter-TSS (NM_026810)	-104.0	NM_175266	77781.0	Mm.209005	NM_175266	ENSMUSG00000046785	Epm2aip1	A930003G21Rik|mKIAA0766	EPM2A (laforin) interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-108562455-4	chr3	108562359	108562559	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026198)	promoter-TSS (NM_026198)	7.0	NM_026198	67495.0	Mm.32615	NM_026198	ENSMUSG00000068732	Tmem167b	2010200O16Rik	transmembrane protein 167B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75268054-4	chr11	75267934	75268134	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_177708)	TTS (NM_177708)	74041.0	NM_177708	237847.0	Mm.82661	NM_177708	ENSMUSG00000045287	Rtn4rl1	Ngr3|Ngrh2|Ngrl2	reticulon 4 receptor-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-94713637-1	chr13	94713537	94713737	+	603.0	f0_balb.idr	Intergenic	Intergenic	-75306.0	NM_009321	21371.0	Mm.379025	NM_009321	ENSMUSG00000042043	Tbca	Tbca13	tubulin cofactor A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99596374-5	chr15	99596275	99596475	+	804.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4825.0	NM_175087	11831.0	Mm.202309	NM_175087	ENSMUSG00000043144	Aqp6	AI790337	aquaporin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-127572735-4	chr3	127572631	127572831	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197997, intron 7 of 25)	intron (NM_197997, intron 7 of 25)	19242.0	NM_197997	71643.0	Mm.274884	NM_197997	ENSMUSG00000051278	Zgrf1	4930422G04Rik|AI448607	zinc finger, GRF-type containing 1	protein-coding	4.00403951705253	2.18465417216018	4.31564838174079	4.15596350913296	4.12515905399531	3.00573658164079	3.95579589689626	4.01829477783195	-0.0516497894898091	0.929411322470946	0.998431161219273
Merged-chr10-67290785-4	chr10	67290679	67290879	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5498.0	NM_001036293	641340.0	Mm.136223	NM_001036293	ENSMUSG00000075000	Nrbf2	NRBF-2	nuclear receptor binding factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141635011-2	chr7	141634911	141635111	+	649.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001330001, intron 32 of 33)	PB1D10|SINE|Alu	14310.0	NR_106030	102466798.0		NR_106030	ENSMUSG00000098759	Mir7063	Gm27654|mmu-mir-7063	microRNA 7063	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-139944111-4	chr7	139943968	139944168	+	754.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009482, exon 1 of 2)	exon (NM_009482, exon 1 of 2)	212.0	NM_009482	22286.0	Mm.10205	NM_009482	ENSMUSG00000047751	Utf1	AI505934	undifferentiated embryonic cell transcription factor 1	protein-coding	1.35485705883878	1.73075646119429	0.814193160166008	2.88358553225198	2.04005219344823	1.14308312975652	0.820221209587503	0.796412020969339	-1.61622918988374	0.220991159884841	0.712117798468663
Merged-chr17-34893249-2	chr17	34893149	34893349	+	666.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1310.0	NM_198886	193736.0	Mm.161119	NM_198886	ENSMUSG00000049823	Zbtb12	BC020447|Bat-9|Bat9|G10|NG35	zinc finger and BTB domain containing 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-62919814-2	chr13	62919714	62919914	+	617.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31532.0	NM_019395	14121.0	Mm.423078	NM_019395	ENSMUSG00000069805	Fbp1	Fbp-2|Fbp2|Fbp3	fructose bisphosphatase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-110563512-2	chr11	110563410	110563610	+	764.5	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	84170.0	NM_001356346	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	2.47681551564911	2.07606964994033	1.49360260400177	1.22940944104836	2.08855689618698	2.5539573654199	2.15122845697979	1.95970387051379	0.692350001109759	0.488845336919611	0.933746049075178
Merged-chr5-137672113-4	chr5	137672022	137672222	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303271, intron 1 of 12)	intron (NM_001303271, intron 1 of 12)	12631.0	NM_001303271	231801.0	Mm.260869	NM_145566	ENSMUSG00000029722	Agfg2	A630095P14Rik|Hrbl|RAB-R|RABR	ArfGAP with FG repeats 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-92656389-4	chr5	92656312	92656512	+	937.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360020, intron 9 of 9)	intron (NM_001360020, intron 9 of 9)	18715.0	NM_001360018	320696.0	Mm.209991	NM_177230	ENSMUSG00000050050	Ccdc158	4932413O14Rik	coiled-coil domain containing 158	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95634910-2	chr3	95634810	95635010	+	841.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9930.0	NM_001026212	56205.0	Mm.241365	NM_019561	ENSMUSG00000038619	Ensa	1700020C18Rik|2610007F17Rik|AI451924	endosulfine alpha	protein-coding	1.51758908089447	0.760837631763198	1.11075924673751	1.33063657204762	0.726919228861978	0.980510561520542	1.59773614194093	1.08478150176008	-0.284346804152898	0.840843981753369	0.998431161219273
Merged-chr11-102310207-2	chr11	102310107	102310307	+	886.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_001302954, exon 9 of 20)	exon (NM_001302954, exon 9 of 20)	7080.0	NM_001044383	21429.0	Mm.2845	NM_011551	ENSMUSG00000020923	Ubtf	A930005G04Rik|NOR-90|Tcfubf|UBF|UBF-1|UBF1	upstream binding transcription factor, RNA polymerase I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-8839355-4	chr13	8839222	8839422	+	964.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039388, intron 9 of 13)	intron (NM_001039388, intron 9 of 13)	31722.0	NM_001039389	207615.0	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-6906186-4	chr13	6906108	6906308	+	986.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-257437.0	NM_001291071	56421.0	Mm.273874	NM_019703	ENSMUSG00000021196	Pfkp	1200015H23Rik|9330125N24Rik|ATP-PFK|PFK-C|PFK-P	phosphofructokinase, platelet	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-75832909-2	chr13	75832809	75833009	+	667.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6976.0	NM_001360151	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	1.15695763027304	0.672422296037637	0.300889614883007	0.465535856718561	0.784781501545672	0.309747038920082	0.302487022904834	0.46874166397019	-1.2603863250111	0.484163949248575	1
Merged-chr2-27327991-2	chr2	27327891	27328091	+	642.166626	f1_balb.idr|f1_c57bl6.idr	intron (NR_133905, intron 2 of 29)	intron (NR_133905, intron 2 of 29)	-80688.0	NM_138665	192166.0	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100950024-1	chr7	100949924	100950124	+	543.0	f1_c57bl6.idr	intron (NM_183168, intron 1 of 2)	intron (NM_183168, intron 1 of 2)	14342.0	NM_183168	233571.0	Mm.235193	NM_183168	ENSMUSG00000048779	P2ry6	2010204J23Rik|P2Y6	pyrimidinergic receptor P2Y, G-protein coupled, 6	protein-coding	-0.928940593673113	0.15260240890053	-0.919403370180166	-0.922956985378252	-0.928043701396376	-0.905131160573435	-0.918394354967459	-0.922333464130162	-3.4757377177308	0.248847205590595	1
Merged-chr19-34789204-4	chr19	34789114	34789314	+	881.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVB7_4-LTR_MM|LTR|ERVK	31559.0	NR_029783	723826.0		NR_029783	ENSMUSG00000065594	Mir107	Mirn107|mir-107|mmu-mir-107	microRNA 107	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-24073366-2	chr11	24073266	24073466	+	578.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4690.0	NM_016707	14025.0	Mm.53687	NM_016707	ENSMUSG00000000861	Bcl11a	2810047E18Rik|BCL-11A|Ctip1|D930021L15Rik|Evi9|Evi9a|Evi9b|Evi9c|mKIAA1809	B cell CLL/lymphoma 11A (zinc finger protein)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-186117960-2	chr1	186117860	186118060	+	912.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146106)	promoter-TSS (NM_146106)	-650.0	NM_146106	226791.0	Mm.257116	NM_146106	ENSMUSG00000039246	Lyplal1	BC027340|Q96AVO	lysophospholipase-like 1	protein-coding	-0.898443344149008	-0.883064818360745	-0.891077179145227	-0.893838745863429	-0.736208673427474	-0.0972352593783111	-0.890289402794229	-0.893355649448197	3.24588741766978	0.264981069630163	1
Merged-chr18-5123917-4	chr18	5123819	5124019	+	782.174988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41812.0	NR_153824	102637682.0	Mm.451914	NR_153824		Gm26682	Gm38715	predicted gene, 26682	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-93883842-4	chr16	93883751	93883951	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028083)	promoter-TSS (NM_028083)	-50.0	NM_028083	110749.0	Mm.274222	NM_028083	ENSMUSG00000022945	Chaf1b	2600017H24Rik|C76145|CAF-I p60|CAF-Ip60|CAF1|CAF1A|CAF1P60|MPHOSPH7	chromatin assembly factor 1, subunit B (p60)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-62679670-1	chr1	62679570	62679770	+	617.0	f0_balb.idr	Intergenic	RMER10A|LTR|ERVL	-23647.0	NM_001077406	18187.0	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-31099529-2	chr3	31099429	31099629	+	630.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039090, intron 2 of 6)	intron (NM_001039090, intron 2 of 6)	4471.0	NM_001271772	20482.0	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-3481093-2	chr8	3480993	3481193	+	574.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029598, intron 4 of 8)	B1_Mur4|SINE|Alu	10231.0	NM_029598	76406.0	Mm.74996	NM_029598	ENSMUSG00000040340	Tex45	1700019B03Rik	testis expressed 45	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19331511-2	chr7	19331418	19331618	+	756.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-13553.0	NM_001127324	13870.0	Mm.280913	NM_007948	ENSMUSG00000003549	Ercc1	Ercc-1	excision repair cross-complementing rodent repair deficiency, complementation group 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-87023625-4	chr17	87023502	87023702	+	967.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008838, intron 2 of 5)	intron (NM_008838, intron 2 of 5)	1799.0	NM_008838	18701.0	Mm.219685	NM_008838	ENSMUSG00000024145	Pigf	-	phosphatidylinositol glycan anchor biosynthesis, class F	protein-coding	5.7616178897787	6.19239447980061	4.62105861890364	6.01882731090682	4.19615304355468	5.21211876533639	4.23631332000163	4.46482875813087	-1.37651571814406	0.000290488080444142	0.00719107838205395
Merged-chr11-11679780-1	chr11	11679680	11679880	+	547.0	f1_c57bl6.idr	Intergenic	L2|LINE|L2	-6145.0	NM_009578	22778.0	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-100272195-4	chr6	100272119	100272319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019743, intron 2 of 4)	intron (NM_019743, intron 2 of 4)	15139.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-37051920-3	chr17	37051820	37052020	+	832.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019439, intron 6 of 22)	intron (NM_019439, intron 6 of 22)	5954.0	NM_019439	54393.0	Mm.32191	NM_019439	ENSMUSG00000024462	Gabbr1	GABAB1|GABAbR1|bM573K1.1	gamma-aminobutyric acid (GABA) B receptor, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-120975215-3	chr4	120975087	120975287	+	657.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133716, intron 6 of 9)	intron (NM_133716, intron 6 of 9)	-1865.0	NR_105982	102465614.0		NR_105982	ENSMUSG00000106436	Mir7015	mmu-mir-7015	microRNA 7015	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-102909553-2	chr14	102909453	102909653	+	732.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	73079.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-103272738-4	chr15	103272621	103272821	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357748)	promoter-TSS (NM_001357748)	-167.0	NM_019817	56447.0	Mm.29473	NM_019817	ENSMUSG00000060992	Copz1	5930435A22Rik|AA407760|D4Ertd360e	coatomer protein complex, subunit zeta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101455193-1	chr7	101455093	101455293	+	689.0	f0_balb.idr	promoter-TSS (NR_152194)	promoter-TSS (NR_152194)	-869.0	NR_152194	207728.0	Mm.247564	NM_001008548	ENSMUSG00000030653	Pde2a	CGS-PDE|cGSPDE	phosphodiesterase 2A, cGMP-stimulated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-83137708-2	chr15	83137608	83137808	+	562.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178627, intron 2 of 8)	intron (NM_178627, intron 2 of 8)	11670.0	NM_178627	73826.0	Mm.23758	NM_178627	ENSMUSG00000041815	Poldip3	1110008P04Rik|AA408269|AL022852|C77954|PDIP46|SKAR|mKIAA1649	polymerase (DNA-directed), delta interacting protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-46754563-2	chr7	46754463	46754663	+	725.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_011314)	TTS (NM_011314)	2730.0	NM_001357491	20209.0	Mm.200941	NM_011314	ENSMUSG00000057465	Saa2	AW111173|Saa-2|Saa1	serum amyloid A 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-24224744-2	chr15	24224644	24224844	+	802.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	1188281.0	NM_001081299	320865.0	Mm.241965	NM_001081299	ENSMUSG00000040420	Cdh18	B230220E17Rik|Cdh14l|Tg(GFAP-APOE_i4)1Hol	cadherin 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-102683954-4	chr13	102683850	102684050	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9597.0	NM_001360519	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-112712411-2	chr12	112712311	112712511	+	606.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9763.0	NM_001024602	217882.0	Mm.23689	NM_001024602	ENSMUSG00000072825	Cep170b	AI466840|AW555464|Kiaa0284|mKIAA0284	centrosomal protein 170B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-34956286-2	chr18	34956186	34956386	+	594.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1935.0	NM_010481	15526.0	Mm.209419	NM_010481	ENSMUSG00000024359	Hspa9	74kDa|Csa|Grp75|Hsc74|Hsp74|Hsp74a|Hspa9a|Mortalin|Mot-2|Mot2|Mthsp70|Pbp74	heat shock protein 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117476807-2	chr8	117476703	117476903	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17538.0	NR_106046	102465653.0		NR_106046	ENSMUSG00000098483	Mir7078	Gm27386|mmu-mir-7078	microRNA 7078	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-72601254-4	chr5	72601163	72601363	+	935.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR31_Mur|LTR|ERVK	-13713.0	NM_001024147	545758.0	Mm.332426	NM_001024147	ENSMUSG00000060204	Gm5868	EG545758	predicted gene 5868	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19846086-2	chr7	19845986	19846186	+	646.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5917.0	NM_001270489	100502736.0	Mm.445354	NM_001270489	ENSMUSG00000092216	Gm19345	-	predicted gene, 19345	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120675830-2	chr8	120675730	120675930	+	732.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F2|SINE|Alu	7510.0	NM_001293559	12857.0	Mm.386758	NM_009941	ENSMUSG00000031818	Cox4i1	AL024441|COX|COX IV-1|COXIV|Cox4|Cox4a|IV-1	cytochrome c oxidase subunit 4I1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-32666425-4	chr16	32666329	32666529	+	858.216675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033493, exon 2 of 3)	non-coding (NR_033493, exon 2 of 3)	1768.0	NR_033493	675921.0	Mm.404316	NR_033493	ENSMUSG00000075265	Tnk2os	Gm10818	tyrosine kinase, non-receptor 2, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-87059429-2	chr5	87059329	87059529	+	554.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C2|LTR|ERVK	33126.0	NM_001029867	231396.0	Mm.439851	NM_001029867	ENSMUSG00000070704	Ugt2b36	-	UDP glucuronosyltransferase 2 family, polypeptide B36	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-63982763-2	chr15	63982663	63982863	+	803.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144846, intron 1 of 11)	intron (NM_144846, intron 1 of 11)	15303.0	NM_001360035	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-75589281-4	chr10	75589156	75589356	+	889.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011820)	promoter-TSS (NM_011820)	-125.0	NM_011820	23887.0	Mm.257927	NM_011820	ENSMUSG00000006344	Ggt5	AI551243|GGL|GGT-REL|Ggtla1	gamma-glutamyltransferase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-55328619-1	chr13	55328519	55328719	+	552.0	f1_balb.idr	exon (NM_016662, exon 3 of 6)	exon (NM_016662, exon 3 of 6)	1111.0	NM_016662	17121.0	Mm.20350	NM_016662	ENSMUSG00000021485	Mxd3	4631412E13Rik|Mad3|bHLHc13	Max dimerization protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-17942556-2	chr13	17942456	17942656	+	649.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019491, intron 1 of 4)	intron (NM_019491, intron 1 of 4)	1661.0	NM_019491	56044.0	Mm.27348	NM_019491	ENSMUSG00000008859	Rala	3010001O15Rik|AW322615|Ral|Rasl1	v-ral simian leukemia viral oncogene A (ras related)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-72927188-4	chr17	72927091	72927291	+	821.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029999, intron 2 of 2)	intron (NM_029999, intron 2 of 2)	8886.0	NM_029999	77889.0	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	1.45387788775705	1.41222313024054	2.38951959412111	2.0488359344672	1.61109306339005	1.1674466207214	1.88821891857086	2.40807108128698	-0.109409756897575	0.919655264212847	0.998431161219273
Merged-chr8-40862456-5	chr8	40862412	40862612	+	975.900024	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001044740, exon 1 of 12)	5' UTR (NM_001044740, exon 1 of 12)	145.0	NM_001044740	11988.0	Mm.4676	NM_007514	ENSMUSG00000031596	Slc7a2	20.5|AI158848|Atrc2|CAT-2|Cat2|Tea	solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70531365-1	chr11	70531265	70531465	+	689.0	f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	6008.0	NM_008946	19175.0	Mm.98	NM_008946	ENSMUSG00000018286	Psmb6	Lmp19|Mpnd	proteasome (prosome, macropain) subunit, beta type 6	protein-coding	0.049362427621318	0.626746569806444	-0.215298777347562	-0.0493679764333663	-0.0733696689517385	-0.209178474434457	-0.214196271267901	-0.218484085791798	-2.96715611756934	0.181021327110176	1
Merged-chr5-5373174-2	chr5	5373074	5373274	+	746.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011074, intron 2 of 14)	intron (NM_011074, intron 2 of 14)	7077.0	NM_011074	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-18946050-4	chr8	18945970	18946170	+	818.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176951, intron 2 of 6)	intron (NM_176951, intron 2 of 6)	4801.0	NM_001286469	319581.0	Mm.111354	NM_176951	ENSMUSG00000039814	Xkr5	5430438H03Rik|XRG5	X-linked Kx blood group related 5	protein-coding	1.7515118914742	2.47810687678704	1.03653769282924	1.0180577883766	1.52222203348276	1.53715712907443	1.80038842814931	2.16528997340151	0.122338705040367	0.917526067095196	0.998431161219273
Merged-chr7-99073424-1	chr7	99073324	99073524	+	571.5	f1_balb.idr	intron (NM_178635, intron 5 of 14)	intron (NM_178635, intron 5 of 14)	67720.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	1.64098661110063	2.15503893079316	1.93582313233624	2.54329881313556	2.57971873649221	1.35634297188514	2.45316458934208	2.37713154028739	0.396104666533558	0.676272359786912	0.99440487726309
Merged-chr11-110420717-4	chr11	110420612	110420812	+	956.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356352, intron 1 of 11)	intron (NM_001356352, intron 1 of 11)	21610.0	NM_001356353	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-46449144-1	chr4	46449044	46449244	+	546.0	f1_c57bl6.idr	Intergenic	Intergenic	-1782.0	NM_130889	67628.0	Mm.263913	NM_130889	ENSMUSG00000028333	Anp32b	2410015B15Rik|PAL31|PHAPI2a|Ssp29	acidic (leucine-rich) nuclear phosphoprotein 32 family, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64900432-4	chr5	64900333	64900533	+	958.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32266.0	NM_030682	21897.0	Mm.273024	NM_030682	ENSMUSG00000044827	Tlr1	-	toll-like receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-34028602-2	chr11	34028502	34028702	+	674.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_155520, intron 4 of 4)	intron (NR_155520, intron 4 of 4)	-18326.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98862944-2	chr11	98862844	98863044	+	693.833313	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_197940)	promoter-TSS (NM_197940)	-654.0	NM_197940	68524.0	Mm.28661	NM_197940	ENSMUSG00000038013	Wipf2	1110014J05Rik|5730509C05Rik|AA407487|Gm1176|Wich|Wire	WAS/WASL interacting protein family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-102467240-4	chr11	102467136	102467336	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010575, intron 4 of 29)	CpG	2647.0	NM_010575	16399.0	Mm.26646	NM_010575	ENSMUSG00000034664	Itga2b	AI172977|CD41|CD41B|GpIIb|alphaIIb	integrin alpha 2b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-181693811-6	chr2	181693687	181693887	+	918.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291208)	promoter-TSS (NM_001291208)	23.0	NM_001291206	56470.0	Mm.274366	NM_026446	ENSMUSG00000002458	Rgs19	2610042F04Rik|AI324841|AW547781|GAIP	regulator of G-protein signaling 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-78202030-2	chr16	78201930	78202130	+	597.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53424.0	NR_045698	100503619.0	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71275437-2	chr8	71275337	71275537	+	924.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001142322, intron 1 of 39)	intron (NM_001142322, intron 1 of 39)	2723.0	NM_001142323	17925.0	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	1.10819824849951	0.714610719739314	1.5506711170367	0.693298462048888	1.11839007649107	1.40910687419018	0.705300107536318	1.40967888453258	0.480877168524907	0.747992479070468	0.998431161219273
Merged-chr9-120043328-4	chr9	120043223	120043423	+	986.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19725.0	NM_011724	22437.0	Mm.10117	NM_011724	ENSMUSG00000079243	Xirp1	AI415219|Cmya1	xin actin-binding repeat containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-78244156-4	chr10	78244075	78244275	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081055, intron 1 of 22)	CpG	467.0	NM_001081055	216131.0	Mm.27539	NM_001081055	ENSMUSG00000000374	Trappc10	B230307C21Rik|Gm870|Tmem1|b2b2416Clo|b2b2613Clo	trafficking protein particle complex 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-62792370-4	chr10	62792259	62792459	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026201)	promoter-TSS (NM_026201)	9.0	NM_026201	67500.0	Mm.196371	NM_026201	ENSMUSG00000020074	Ccar1	2610511G16Rik|9430036H15Rik|Carp1	cell division cycle and apoptosis regulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139256379-2	chr5	139256279	139256479	+	543.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163316, intron 1 of 8)	intron (NM_001163316, intron 1 of 8)	2882.0	NM_001163316	67604.0	Mm.270137	NM_026269	ENSMUSG00000025858	Get4	1110007L15Rik|AW412535|Cee	golgi to ER traffic protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-25570522-4	chr9	25570423	25570623	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 3 of 7)	intron (NM_026189, intron 3 of 7)	88926.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-29665141-2	chr4	29665041	29665241	+	577.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17A2|LTR|ERVK	597062.0	NR_151693	102634169.0		NR_151693		Gm11917	-	predicted gene 11917	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-78402068-4	chr17	78401967	78402167	+	878.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360407, intron 4 of 9)	intron (NM_001360407, intron 4 of 9)	16085.0	NM_001285949	225020.0	Mm.236835	NM_199448	ENSMUSG00000056121	Fez2	9030616F16|D17Ertd315e	fasciculation and elongation protein zeta 2 (zygin II)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-20392912-2	chr14	20392812	20393012	+	662.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025440, intron 1 of 2)	intron (NM_025440, intron 1 of 2)	578.0	NR_155747	66242.0	Mm.23747	NM_025440	ENSMUSG00000049960	Mrps16	1500011E11Rik|Mprs16|S16mt	mitochondrial ribosomal protein S16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-36186278-2	chr17	36186178	36186378	+	699.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008208, exon 6 of 6)	3' UTR (NM_008208, exon 6 of 6)	3873.0	NM_008208	15043.0	Mm.426002	NM_008208	ENSMUSG00000054128	H2-T3	H-2T3|H2-Tw3|MumuTL|TL	histocompatibility 2, T region locus 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-29190579-1	chr11	29190479	29190679	+	572.0	f0_balb.idr	intron (NM_134034, intron 4 of 15)	URR1A|DNA|hAT-Charlie	17672.0	NM_134034	104570.0	Mm.276386	NM_134034	ENSMUSG00000020463	Ppp4r3b	AW011752|AW557776|Smek2|mKIAA1387	protein phosphatase 4 regulatory subunit 3B	protein-coding	-0.90856715107536	-0.125828373998887	-0.901397477057805	-0.904086526466182	-0.747864373710333	-0.890012471362281	-0.900630138308409	-0.903616214400303	-2.26152155324398	0.447902055616201	1
Merged-chr18-23911668-2	chr18	23911568	23911768	+	544.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43020.0	NM_027007	69256.0	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-91178833-4	chr15	91178737	91178937	+	990.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011994, intron 4 of 9)	intron (NM_011994, intron 4 of 9)	13170.0	NM_011994	26874.0	Mm.295456	NM_011994	ENSMUSG00000055782	Abcd2	ABC39|ALDL1|ALDR|ALDRP	ATP-binding cassette, sub-family D (ALD), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95661017-3	chr3	95660906	95661106	+	928.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008562, exon 3 of 3)	3' UTR (NM_008562, exon 3 of 3)	2285.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-65358943-2	chr14	65358843	65359043	+	935.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_199029, intron 1 of 9)	CpG	267.0	NM_199029	380912.0	Mm.270087	NM_199029	ENSMUSG00000034522	Zfp395	BC053701|Gm910	zinc finger protein 395	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-76088700-3	chr2	76088596	76088796	+	840.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081033, intron 10 of 19)	intron (NM_001081033, intron 10 of 19)	-106729.0	NM_030188	78802.0	Mm.282339	NM_030188	ENSMUSG00000075271	Ttc30a1	4930506L13Rik	tetratricopeptide repeat domain 30A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-50112114-2	chr11	50112014	50112214	+	570.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290750, intron 7 of 7)	intron (NM_001290750, intron 7 of 7)	-19246.0	NM_001290759	76795.0	Mm.290975	NM_029745	ENSMUSG00000036644	Tbc1d9b	-	TBC1 domain family, member 9B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-80184687-2	chr12	80184587	80184787	+	808.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134156, intron 9 of 20)	intron (NM_134156, intron 9 of 20)	-51843.0	NR_033514	69548.0	Mm.269712	NR_033514		2310015A10Rik	5330419I17Rik	RIKEN cDNA 2310015A10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-13648069-4	chr1	13648014	13648214	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145381, intron 2 of 6)	intron (NM_145381, intron 2 of 6)	12395.0	NM_145381	212442.0	Mm.89572	NM_145381	ENSMUSG00000025937	Lactb2	Cgi-83|E430032H21Rik	lactamase, beta 2	protein-coding	-1.32440223303897	-1.29339468673833	-0.717877708899544	-1.31276353204239	-1.32392690786997	-1.29109028300231	-1.30162128075409	-1.31119997543009	-2.49510383040271	0.470258445164311	1
Merged-chr1-131252763-4	chr1	131252736	131252936	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7658.0	NM_018750	54354.0	Mm.248291	NM_018750	ENSMUSG00000026430	Rassf5	1300019G20Rik|Maxp1|Nore1|Nore1A|Nore1B|Rapl	Ras association (RalGDS/AF-6) domain family member 5	protein-coding	-0.459169537158215	-0.445531432185466	0.344153163585249	-0.453433158292052	-0.458314932114159	-0.444528622766728	-0.449003505411347	-0.000667380686336094	-1.10183730184683	0.684100399718754	1
Merged-chr7-130519611-4	chr7	130519489	130519689	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001136054)	promoter-TSS (NM_001136054)	-9.0	NM_013799	11907.0	Mm.216321	NM_013799	ENSMUSG00000030850	Ate1	AI225793|AW547406	arginyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-44718442-4	chr13	44718348	44718548	+	923.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12326.0	NM_021878	16468.0	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3667026-4	chr12	3666904	3667104	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162465, intron 8 of 17)	L1M4|LINE|L1	94020.0	NM_007886	13528.0	Mm.286202	NM_007886	ENSMUSG00000071454	Dtnb	-	dystrobrevin, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-54544984-4	chr18	54544875	54545075	+	816.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66769.0	NR_045400	328957.0	Mm.402781	NR_045400		9330117O12Rik	9330117O12	RIKEN cDNA 9330117O12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-58214995-4	chr15	58214882	58215082	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026346)	promoter-TSS (NM_026346)	-90.0	NM_026346	67731.0	Mm.25683	NM_026346	ENSMUSG00000022358	Fbxo32	4833442G10Rik|AI430017|ATROGIN1|Gm20361|MAFbx	F-box protein 32	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43546219-2	chr4	43546081	43546281	+	594.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_011602, intron 20 of 56)	intron (NM_011602, intron 20 of 56)	16402.0	NM_011602	21894.0	Mm.208601	NM_011602	ENSMUSG00000028465	Tln1	Tln	talin 1	protein-coding	0.0851406948128619	0.542248366768108	0.0939134331323675	0.0905939162916978	0.085947334850226	0.744632471255053	0.0948671395045556	0.478275973423691	1.38271003664582	0.532788576412883	1
Merged-chr3-69264373-2	chr3	69264278	69264478	+	946.8333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	41959.0	NM_027843	71619.0	Mm.98122	NM_027843	ENSMUSG00000098207	Arl14	9130014L17Rik|Arf7	ADP-ribosylation factor-like 14	protein-coding	-1.8441302108003	-1.81350723920635	-1.82276787857624	-1.83037484348242	-1.84198053481629	-1.6657882855277	-1.67495933831482	-1.8290132004012	1.61115487639342	0.646990671328599	1
Merged-chr3-145988511-2	chr3	145988411	145988611	+	541.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001166064, exon 1 of 7)	exon (NM_001166064, exon 1 of 7)	641.0	NM_001166064	214804.0	Mm.268854	NM_001166064	ENSMUSG00000036863	Syde2	C430017H16Rik	synapse defective 1, Rho GTPase, homolog 2 (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-100392389-1	chr8	100392289	100392489	+	610.0	f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	975715.0	NR_132435	234624.0	Mm.124595	NM_175479	ENSMUSG00000052479	A330008L17Rik	-	RIKEN cDNA A330008L17 gene	ncRNA	-0.0892696157424303	1.35792462270318	-0.0672170911537909	-0.0753624387066984	-0.0871689729834655	0.753400202665188	-0.0649189267910688	-0.0739273181320993	-1.31112997537206	0.551717027969831	1
Merged-chr6-134205329-4	chr6	134205229	134205429	+	829.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 3 of 8)	intron (NM_001303102, intron 3 of 8)	169629.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-144904170-4	chr4	144904050	144904250	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357274, intron 2 of 6)	intron (NM_001357274, intron 2 of 6)	11013.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101952931-4	chr11	101952819	101953019	+	992.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045806, intron 1 of 3)	intron (NR_045806, intron 1 of 3)	498.0	NR_045806	73887.0	Mm.159084	NR_045806	ENSMUSG00000071818	4930417O22Rik	-	RIKEN cDNA 4930417O22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4927471-2	chr19	4927371	4927571	+	758.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_133803, intron 1 of 17)	intron (NM_133803, intron 1 of 17)	499.0	NM_001360711	75221.0	Mm.234769	NM_133803	ENSMUSG00000063904	Dpp3	4930533O14Rik|C86324|DPP III	dipeptidylpeptidase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-11684853-3	chr11	11684717	11684917	+	854.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1108.0	NM_009578	22778.0	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52726301-3	chr13	52726191	52726391	+	888.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4c|LINE|L1	30914.0	NR_027893	105404.0	Mm.184173	NR_027893		BB123696	-	expressed sequence BB123696	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-123077366-2	chr10	123077266	123077466	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153395)	promoter-TSS (NM_153395)	-861.0	NM_001163025	67074.0	Mm.169924	NM_153395	ENSMUSG00000034602	Mon2	2610528O22Rik|AW495628|Sf21|mKIAA1040	MON2 homolog, regulator of endosome to Golgi trafficking	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-70714398-7	chr12	70714276	70714476	+	893.7261960000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-111138.0	NM_028127	319710.0	Mm.2962	NM_028127	ENSMUSG00000048285	Frmd6	2610019M19Rik|4930488L10Rik|AW212977|Willin	FERM domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-8245922-4	chr3	8245807	8246007	+	938.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	217191.0	NR_033512	620966.0	Mm.301719	NR_033512		Gm6194	1700003N22Rik|EG620966	transmembrane protein 189 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-83279869-2	chr17	83279769	83279969	+	910.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	64586.0	NM_134117	106522.0	Mm.311974	NM_134117	ENSMUSG00000024247	Pkdcc	AI115348|AW548124|Adtk1|ESTM17|MAd1|Sgk493|Vlk|X83346	protein kinase domain containing, cytoplasmic	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-103623767-2	chr5	103623667	103623867	+	776.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029415, intron 1 of 5)	intron (NM_029415, intron 1 of 5)	5636.0	NM_029415	75750.0	Mm.7446	NM_029415	ENSMUSG00000029321	Slc10a6	8430417G17Rik|C78479|Soat	solute carrier family 10 (sodium/bile acid cotransporter family), member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80059341-4	chr7	80059174	80059374	+	908.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175433, intron 1 of 4)	intron (NM_175433, intron 1 of 4)	15983.0	NR_045695	100859962.0	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-35902544-4	chr16	35902454	35902654	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31172.0	NM_001039530	547253.0	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-13754157-2	chr15	13754057	13754257	+	671.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-580482.0	NM_007666	12563.0	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-51554012-1	chr5	51553912	51554112	+	662.0	f1_balb.idr	promoter-TSS (NM_008904)	promoter-TSS (NM_008904)	-91.0	NM_008904	19017.0	Mm.259072	NM_008904	ENSMUSG00000029167	Ppargc1a	A830037N07Rik|Gm11133|PGC-1|PPARGC-1-alpha|Pgc-1alpha|Pgc1|Pgco1|Ppargc1	peroxisome proliferative activated receptor, gamma, coactivator 1 alpha	protein-coding	1.31816231317596	2.74201437863789	1.64373769168687	0.911521949461621	0.872791742276515	2.76456903396685	2.21478168199473	0.916132842917657	0.228350001763947	0.857280364987156	0.998431161219273
Merged-chr11-116332319-2	chr11	116332219	116332419	+	821.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008240, exon 3 of 3)	exon (NM_008240, exon 3 of 3)	3035.0	NM_008240	15223.0	Mm.378938	NM_008240	ENSMUSG00000034227	Foxj1	FKHL-13|HFH-4|Hfh4	forkhead box J1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-52087716-2	chr3	52087616	52087816	+	854.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	17290.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-53343348-4	chr15	53343257	53343457	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	2826.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-114763544-2	chr9	114763444	114763644	+	588.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252479, intron 1 of 3)	intron (NM_001252479, intron 1 of 3)	18449.0	NM_133978	102545.0	Mm.35600	NM_133978	ENSMUSG00000032436	Cmtm7	AI481279|Cklfsf7|LNV	CKLF-like MARVEL transmembrane domain containing 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-45737367-3	chr17	45737278	45737478	+	849.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152153, intron 1 of 4)	intron (NR_152153, intron 1 of 4)	2872.0	NR_152153	433111.0	Mm.213441	NR_152153	ENSMUSG00000097727	F630040K05Rik	-	RIKEN cDNA F630040K05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35240632-4	chr17	35240545	35240745	+	852.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1101.0	NM_019693	53817.0	Mm.439827	NM_019693	ENSMUSG00000019432	Ddx39b	0610030D10Rik|AI428441|Bat-1|Bat1|Bat1a|D17H6S81E|D17H6S81E-1|D6S81Eh	DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B	protein-coding	1.13779643740466	1.28600452865787	0.758985043309168	1.31435050978556	1.14742713122332	1.29652208090437	0.761334208647014	1.321945988888	0.0359222814348933	0.979415922918659	0.998431161219273
Merged-chr8-26743949-1	chr8	26743849	26744049	+	541.0	f1_balb.idr	Intergenic	Lx2|LINE|L1	80474.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	-0.760332142286065	-0.749716895725185	-0.753192380707678	-0.755875364885696	-0.759668954402841	-0.105840258431533	-0.407906358364414	-0.755406559939467	3.27164358764104	0.254770898599832	1
Merged-chr1-36563140-2	chr1	36563040	36563240	+	607.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001126046, intron 14 of 14)	intron (NM_001126046, intron 14 of 14)	-4759.0	NM_001126047	20353.0	Mm.29558	NM_001126047	ENSMUSG00000026121	Sema4c	AI426163|M-Sema F|Semacl1|Semaf|Semai|sema I	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-13295324-2	chr8	13295224	13295424	+	672.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172282, intron 4 of 12)	intron (NM_172282, intron 4 of 12)	-7198.0	NM_001042650	102323.0	Mm.368890	NM_001024504	ENSMUSG00000038506	Dcun1d2	AW495713|mFLJ10704	DCN1, defective in cullin neddylation 1, domain containing 2 (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-116170662-2	chr4	116170562	116170762	+	847.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F1|SINE|Alu	-2710.0	NM_001099295	67323.0	Mm.45442	NM_001099295	ENSMUSG00000078593	1700042G07Rik	-	RIKEN cDNA 1700042G07 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118623606-3	chr9	118623483	118623683	+	868.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 1 of 27)	Lx8|LINE|L1	16874.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-29843008-3	chr5	29842904	29843104	+	952.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-107068.0	NR_028426	332993.0	Mm.473746	NR_028426		Gm5129	EG332993	predicted gene 5129	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-35109524-4	chr2	35109423	35109623	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_012018)	promoter-TSS (NM_012018)	31.0	NM_012018	26920.0	Mm.231332	NM_012018	ENSMUSG00000057110	Cntrl	6720467O09Rik|AA968343|Cep1|Cep110|IB3/5|Ma2a8|b2b1468.1Clo|b2b1468Clo	centriolin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-74433938-2	chr5	74433838	74434038	+	655.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114660, intron 4 of 8)	intron (NM_001114660, intron 4 of 8)	97804.0	NM_178672	212986.0	Mm.134147	NM_178672	ENSMUSG00000062110	Scfd2	E430013M20Rik|STXBP1L1	Sec1 family domain containing 2	protein-coding	-0.441489197468555	-0.429285826933353	-0.433288478085536	-0.436373573755758	-0.440728680308242	-0.231128122988261	0.247761518430273	-0.128326293530537	3.55933187286216	0.152333829506015	1
Merged-chr12-35553390-4	chr12	35553358	35553558	+	939.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18469.0	NM_001314027	11622.0	Mm.341377	NM_013464	ENSMUSG00000019256	Ahr	Ah|Ahh|Ahre|In|bHLHe76	aryl-hydrocarbon receptor	protein-coding	2.23375055403827	3.09524895164734	2.79710541310907	2.81956857529088	2.38147405861666	3.20714378179765	2.57963184759862	3.09111308894131	0.172126881878205	0.807889329554635	0.998431161219273
Merged-chr5-148634155-3	chr5	148634061	148634261	+	916.400024	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-81373.0	NM_001359199	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-67549332-3	chr7	67549214	67549414	+	849.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028144, intron 5 of 8)	intron (NR_028144, intron 5 of 8)	95922.0	NM_175124	67867.0	Mm.31247	NM_027413	ENSMUSG00000030556	Lrrc28	1300004K21Rik|2210012C09Rik|2310058O11Rik	leucine rich repeat containing 28	protein-coding	1.02747969600489	0.851776122598848	1.555686364775	1.31721057719251	1.2451056898673	0.638000842257525	0.626895925496262	0.617307643775622	-1.84872384034807	0.236003058935765	0.732629278941764
Merged-chr8-70507938-2	chr8	70507769	70507969	+	861.416626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001348229)	TTS (NM_001348229)	-1117.0	NM_025577	66462.0	Mm.28242	NM_025577	ENSMUSG00000058833	Rex1bd	2810428I15Rik	required for excision 1-B domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-63681348-2	chr18	63681248	63681448	+	816.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016792, intron 2 of 7)	intron (NM_016792, intron 2 of 7)	11011.0	NM_016792	53382.0	Mm.19169	NM_016792	ENSMUSG00000024583	Txnl1	32kDa|TRP32|Txnl	thioredoxin-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-15959995-2	chr4	15959895	15960095	+	744.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013752, intron 1 of 15)	RMER1B|Other|Other	2028.0	NM_013752	27354.0	Mm.20866	NM_013752	ENSMUSG00000028224	Nbn	Nbs1	nibrin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-86599401-4	chr6	86599322	86599522	+	941.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28752.0	NM_026414	67855.0	Mm.183043	NM_026414	ENSMUSG00000033508	Asprv1	2300003P22Rik|AA986851|SASP|SASPase|Taps	aspartic peptidase, retroviral-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-64979482-2	chr11	64979382	64979582	+	777.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023479, intron 1 of 24)	intron (NM_023479, intron 1 of 24)	447.0	NM_023479	68626.0	Mm.157711	NM_023479	ENSMUSG00000020549	Elac2	1110017O07Rik|D11Wsu80e|Hpc2	elaC ribonuclease Z 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-145175750-1	chr5	145175650	145175850	+	618.0	f1_c57bl6.idr	intron (NM_001291249, intron 4 of 7)	intron (NM_001291249, intron 4 of 7)	8537.0	NM_001291248	54188.0	Mm.196884	NM_178576	ENSMUSG00000029625	Cpsf4	30kDa|C79664	cleavage and polyadenylation specific factor 4	protein-coding	0.226547539837261	0.257475934944901	1.14051237698379	0.239728938054977	0.693734820697496	1.32341881276827	0.249733427409333	0.241098343512988	0.801826419648362	0.683287635170577	1
Merged-chr13-115152465-2	chr13	115152365	115152565	+	681.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA5A|LINE|L1	-50501.0	NM_001033228	109700.0	Mm.317280	NM_001033228	ENSMUSG00000042284	Itga1	CD49A|E130012M19Rik|Vla1	integrin alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-63207023-2	chr4	63206911	63207111	+	998.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8401.0	NM_025685	373864.0	Mm.194116	NM_025685	ENSMUSG00000045672	Col27a1	5730512J02Rik|AI449266	collagen, type XXVII, alpha 1	protein-coding	1.15676969361533	1.98588764750267	1.91982594039856	2.18646368165966	1.66484798962943	2.24502352444275	1.93461185543137	1.87638128274493	0.20577955234059	0.841605433774944	0.998431161219273
Merged-chr17-5260021-4	chr17	5259937	5260137	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 5 of 19)	L1MD3|LINE|L1	158730.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111695045-2	chr12	111694945	111695145	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16940.0	NM_177374	328162.0	Mm.425747	NM_177374	ENSMUSG00000060950	Trmt61a	6720458F09Rik|AI606093|Gcd14|Trm61	tRNA methyltransferase 61A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-51590897-2	chr10	51590797	51590997	+	696.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029894)	promoter-TSS (NM_029894)	-437.0	NM_029894	77296.0	Mm.30588	NM_029894	ENSMUSG00000019909	Fam162b	9430073N08Rik	family with sequence similarity 162, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-193198550-2	chr1	193198450	193198650	+	765.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153137, intron 2 of 15)	intron (NM_153137, intron 2 of 15)	2996.0	NM_153137	215243.0	Mm.261259	NM_153137	ENSMUSG00000037318	Traf3ip3	6030423D04Rik|AI115021|T3jam	TRAF3 interacting protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-143789098-2	chr1	143788998	143789198	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019562, intron 3 of 10)	B3|SINE|B2	11820.0	NM_019562	56207.0	Mm.261004	NM_019562	ENSMUSG00000018189	Uchl5	5830413B11Rik|Uch37	ubiquitin carboxyl-terminal esterase L5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-45745050-1	chr17	45744950	45745150	+	545.0	f1_c57bl6.idr	intron (NR_152153, intron 1 of 4)	intron (NR_152153, intron 1 of 4)	10544.0	NR_152153	433111.0	Mm.213441	NR_152153	ENSMUSG00000097727	F630040K05Rik	-	RIKEN cDNA F630040K05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-148681055-4	chr2	148680947	148681147	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028986)	promoter-TSS (NM_028986)	-73.0	NM_001355689	74533.0	Mm.136913	NM_028986	ENSMUSG00000027439	Gzf1	8430437G08Rik|Zfp336|mGZF1	GDNF-inducible zinc finger protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-32965818-4	chr17	32965711	32965911	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033585)	promoter-TSS (NR_033585)	-20.0	NM_153063	224691.0	Mm.328953	NM_153063	ENSMUSG00000053600	Zfp472	KRIM-1|Krim-1A|Krim-1B|Krim1	zinc finger protein 472	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-25505433-4	chr14	25505352	25505552	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 2 of 23)	intron (NM_183208, intron 2 of 23)	-28987.0	NR_037236	100526533.0		NR_037236	ENSMUSG00000093081	Mir3075	mir-3075|mmu-mir-3075	microRNA 3075	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-82918149-3	chr8	82918049	82918249	+	957.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177378, intron 1 of 6)	intron (NM_177378, intron 1 of 6)	54793.0	NM_177378	330812.0	Mm.491438	NM_177378	ENSMUSG00000047747	Rnf150	A630007N06Rik|C030044C12Rik|Greul5|mKIAA1214	ring finger protein 150	protein-coding	3.90245943490522	3.74856000880491	3.28097033324893	4.23292874124369	4.43507292195361	5.41539075049919	5.17420964088784	5.23862646036593	1.5965926972475	9.14702802574048e-05	0.002906565418142
Merged-chr8-71534484-2	chr8	71534384	71534584	+	720.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_198095, intron 4 of 4)	intron (NM_198095, intron 4 of 4)	2953.0	NM_198095	69550.0	Mm.260325	NM_198095	ENSMUSG00000046718	Bst2	2310015I10Rik|Bst-2|C87040|CD317|DAMP-1|GREG	bone marrow stromal cell antigen 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-26941697-4	chr2	26941593	26941793	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198628, intron 5 of 18)	intron (NM_198628, intron 5 of 18)	7624.0	NM_198628	279029.0	Mm.330079	NM_198628	ENSMUSG00000049897	Stkld1	Gm711|Sgk071	serine/threonine kinase-like domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75279162-2	chr11	75279062	75279262	+	564.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	69221.0	NM_001164223	68275.0	Mm.102574	NM_026653	ENSMUSG00000000751	Rpa1	5031405K23Rik|70kDa|AA589576|AW557552|RF-A|RP-A|Rpa	replication protein A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-31064296-2	chr17	31064196	31064396	+	950.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009593, intron 1 of 14)	intron (NM_009593, intron 1 of 14)	6602.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-23843113-2	chr5	23843013	23843213	+	628.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025394, intron 1 of 2)	intron (NM_025394, intron 1 of 2)	1032.0	NM_025394	66169.0	Mm.291868	NM_025394	ENSMUSG00000028998	Tomm7	1110020J08Rik|AW047273|Tom7	translocase of outer mitochondrial membrane 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-140965348-2	chr4	140965248	140965448	+	871.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355515, intron 1 of 7)	B1_Mur3|SINE|Alu	4077.0	NM_023374	67680.0	Mm.246965	NM_023374	ENSMUSG00000009863	Sdhb	0710008N11Rik	succinate dehydrogenase complex, subunit B, iron sulfur (Ip)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80652467-4	chr7	80652343	80652543	+	984.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173863, intron 2 of 14)	intron (NM_173863, intron 2 of 14)	16426.0	NR_040343	100504375.0	Mm.322881	NR_040343	ENSMUSG00000084821	Gm15880	-	predicted gene 15880	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69632786-4	chr11	69632695	69632895	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011814)	promoter-TSS (NM_011814)	-176.0	NM_011814	23879.0	Mm.41930	NM_011814	ENSMUSG00000018765	Fxr2	Fxr2h	fragile X mental retardation, autosomal homolog 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46781290-3	chr8	46781194	46781394	+	855.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152560, intron 1 of 7)	intron (NR_152560, intron 1 of 7)	41549.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-99142401-4	chr14	99142314	99142514	+	956.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029320, intron 9 of 17)	intron (NM_029320, intron 9 of 17)	-42644.0	NR_153390	72662.0	Mm.163339	NM_028315	ENSMUSG00000033166	Dis3	2810028N01Rik	DIS3 homolog, exosome endoribonuclease and 3'-5' exoribonuclease	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-35041596-2	chr7	35041496	35041696	+	565.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008820, intron 13 of 14)	intron (NM_008820, intron 13 of 14)	14970.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-36470198-2	chr16	36470098	36470298	+	585.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-14806.0	NM_025288	20863.0	Mm.136573	NM_025288	ENSMUSG00000054905	Stfa3	Stf3	stefin A3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-15925820-3	chr19	15925712	15925912	+	683.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177420)	promoter-TSS (NM_177420)	-753.0	NM_177420	107272.0	Mm.289936	NM_177420	ENSMUSG00000024640	Psat1	D8Ertd814e|EPIP|PSA|Psat	phosphoserine aminotransferase 1	protein-coding	0.211213602241843	0.237210793361751	0.228791634027233	0.409637958214975	0.21286340387277	1.24760504144885	0.748651827776958	0.707437420781604	3.60891909846145	0.0588158984999652	1
Merged-chr2-180582681-4	chr2	180582557	180582757	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_151482, exon 2 of 5)	non-coding (NR_151482, exon 2 of 5)	1435.0	NR_151482	73247.0	Mm.426558	NM_028479	ENSMUSG00000027569	Mrgbp	1600027N09Rik|AW060503|C80444	MRG/MORF4L binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-137853463-4	chr3	137853374	137853574	+	976.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-11013.0	NM_001316995	51788.0	Mm.117541	NM_016750	ENSMUSG00000037894	H2afz	H2A.Z|H2a.z-1	H2A histone family, member Z	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-139603516-1	chr4	139603416	139603616	+	588.0	f1_c57bl6.idr	intron (NM_001205173, intron 2 of 8)	intron (NM_001205173, intron 2 of 8)	-19378.0	NM_175438	212647.0	Mm.273571	NM_175438	ENSMUSG00000028737	Aldh4a1	A930035F14Rik|Ahd-1|Ahd1|Aldh4|Aldh5a1|E330022C09|P5cd|P5cdh|P5cdhl|P5cdhs|Ssdh1	aldehyde dehydrogenase 4 family, member A1	protein-coding	1.00563123735918	0.741624279618017	1.09031992477686	1.50795492086053	0.708500156521112	1.53834130650603	1.24179245591297	1.06452779511837	0.225906993474821	0.873212170309046	0.998431161219273
Merged-chr2-157944069-2	chr2	157943969	157944169	+	924.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_198627, exon 4 of 4)	exon (NM_198627, exon 4 of 4)	29416.0	NM_198627	277432.0	Mm.441156	NM_198627	ENSMUSG00000037843	Vstm2l	Gm691	V-set and transmembrane domain containing 2-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-37639320-4	chr1	37639209	37639409	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028096, intron 2 of 9)	intron (NM_028096, intron 2 of 9)	80502.0	NM_028096	72097.0	Mm.142607	NM_028096	ENSMUSG00000026090	2010300C02Rik	-	RIKEN cDNA 2010300C02 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59654657-4	chr15	59654555	59654755	+	965.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_144549, exon 3 of 3)	exon (NM_144549, exon 3 of 3)	6001.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-81400907-4	chr13	81400807	81401007	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 77 of 89)	intron (NM_054053, intron 77 of 89)	232237.0	NM_054053	110789.0	Mm.288694	NM_054053	ENSMUSG00000069170	Adgrv1	Frings|Gpr98|Mass1|Mgr1|VLGR1	adhesion G protein-coupled receptor V1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-18991904-2	chr7	18991804	18992004	+	764.5	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_145579, exon 2 of 3)	5' UTR (NM_145579, exon 2 of 3)	659.0	NM_145579	232934.0	Mm.440069	NM_145579	ENSMUSG00000048481	Mypop	Myodysa|P42pop	Myb-related transcription factor, partner of profilin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-123067088-2	chr8	123066988	123067188	+	704.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153176, intron 2 of 16)	PB1D11|SINE|Alu	1580.0	NM_153176	234847.0	Mm.292075	NM_153176	ENSMUSG00000000738	Spg7	AI452278|AU015315|Cmar|PGN	SPG7, paraplegin matrix AAA peptidase subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-24902091-4	chr7	24901984	24902184	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008488)	promoter-TSS (NM_008488)	-902.0	NM_001130150	16801.0	Mm.3181	NM_008488	ENSMUSG00000040940	Arhgef1	Lbcl2|Lsc	Rho guanine nucleotide exchange factor (GEF) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83714178-4	chr11	83714088	83714288	+	988.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	BGLII_B2|LTR|ERVK	5184.0	NM_007969	14038.0	Mm.1650	NM_007969	ENSMUSG00000000983	Wfdc18	Expi|Kal1|WDNM1	WAP four-disulfide core domain 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-26322865-4	chr10	26322767	26322967	+	855.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359255, intron 12 of 21)	intron (NM_001359255, intron 12 of 21)	51205.0	NM_001359255	237339.0	Mm.338439	NM_172787	ENSMUSG00000039089	L3mbtl3	AI481284|MBT-1	L3MBTL3 histone methyl-lysine binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-74784564-4	chr1	74784468	74784668	+	827.658325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009526, exon 4 of 4)	exon (NM_009526, exon 4 of 4)	-7451.0	NM_009518	22409.0	Mm.5130	NM_009518	ENSMUSG00000026167	Wnt10a	-	wingless-type MMTV integration site family, member 10A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-134513016-3	chr4	134512914	134513114	+	897.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081099, intron 1 of 2)	MURVY-LTR|LTR|ERV1	2015.0	NM_001081099	69885.0	Mm.141592	NM_001081099	ENSMUSG00000078521	Aunip	2610002D18Rik|Clhc1	aurora kinase A and ninein interacting protein	protein-coding	3.98775186215127	3.97553598768448	4.917335581934	3.17270144885334	1.05125736098089	1.28526785700954	1.21597907996243	1.15206716401768	-7.2254508509033	4.07538931537203e-10	7.26185955532182e-08
Merged-chr10-101762514-2	chr10	101762414	101762614	+	681.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205098, intron 1 of 7)	RMER17B2|LTR|ERVK	-10178.0	NR_037211	100526516.0		NR_037211	ENSMUSG00000092952	Mir3059	mir-3059|mmu-mir-3059	microRNA 3059	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83637458-2	chr11	83637358	83637558	+	589.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11920.0	NM_011337	20302.0	Mm.1282	NM_011337	ENSMUSG00000000982	Ccl3	AI323804|G0S19-1|LD78alpha|MIP-1alpha|MIP1-(a)|MIP1-alpha|Mip1a|Scya3	chemokine (C-C motif) ligand 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-104002934-1	chr2	104002834	104003034	+	540.0	f0_balb.idr	intron (NM_175161, intron 3 of 4)	intron (NM_175161, intron 3 of 4)	-24865.0	NM_020593	57443.0	Mm.143768	NM_020593	ENSMUSG00000027180	Fbxo3	1200002G09Rik|1700026K02Rik|AI046358|Fba	F-box protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-152746950-2	chr2	152746850	152747050	+	785.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	T-rich|Low_complexity|Low_complexity	-7223.0	NM_053091	84682.0	Mm.196668	NM_053091	ENSMUSG00000009876	Cox4i2	Cox4b|CoxIV-2	cytochrome c oxidase subunit 4I2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-12008218-4	chr4	12008109	12008309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41635.0	NR_040577	100503636.0	Mm.209078	NR_040577		1700123M08Rik	1600025K15Rik	RIKEN cDNA 1700123M08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-95002497-2	chr8	95002397	95002597	+	557.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001198894, exon 2 of 14)	exon (NM_001198894, exon 2 of 14)	-15195.0	NM_173036	54672.0	Mm.27995	NM_173036	ENSMUSG00000060470	Adgrg3	A030001G24Rik|AW214383|Gpr97|Pb1|Pb99	adhesion G protein-coupled receptor G3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-154791874-4	chr2	154791796	154791996	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001139513, intron 1 of 8)	CpG	786.0	NM_001139511	19383.0	Mm.221440	NM_023130	ENSMUSG00000027593	Raly	AI663842|Merc	hnRNP-associated with lethal yellow	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-100490632-4	chr13	100490519	100490719	+	814.229187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360706, intron 1 of 16)	intron (NM_001360706, intron 1 of 16)	1775.0	NR_153794	23894.0	Mm.272533	NM_022011	ENSMUSG00000021639	Gtf2h2	44kDa|BTF2 p44|BTF2-p44|Btf2p44|p44	general transcription factor II H, polypeptide 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-63985910-4	chr15	63985861	63986061	+	840.9249880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144846, intron 1 of 11)	intron (NM_144846, intron 1 of 11)	12105.0	NM_001360035	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101772889-3	chr15	101772790	101772990	+	781.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9386.0	NR_033444	406222.0	Mm.359153	NM_001003669	ENSMUSG00000067596	Krt74	K74|Kb37	keratin 74	pseudo	-2.18138529563533	-2.15523716995652	-2.1631445789866	-2.16963996020037	-2.05513010215571	-2.15352360143315	-2.16135451490766	-2.16847729006863	0.759018020146679	0.829933115115583	1
Merged-chr11-58902728-1	chr11	58902628	58902828	+	555.0	f1_balb.idr	intron (NM_011758, intron 2 of 4)	L1M4b|LINE|L1	1497.0	NM_011758	22698.0	Mm.127646	NM_011758	ENSMUSG00000037001	Zfp39	CTfin33|Zfp-39	zinc finger protein 39	protein-coding	0.390745708795837	0.135307601677935	0.128969136583207	0.293487325832502	0.861812031316781	0.773438373958412	0.130368703839263	0.124923397581116	2.00231395049509	0.324333234478225	1
Merged-chr8-117452218-2	chr8	117452118	117452318	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_106045)	promoter-TSS (NR_106045)	-805.0	NR_106045	102466801.0		NR_106045	ENSMUSG00000099062	Mir7077	Gm27774|mmu-mir-7077	microRNA 7077	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-87541142-4	chr6	87541045	87541245	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7886.0	NM_001286610	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123727948-1	chr5	123727848	123728048	+	650.0	f1_balb.idr	TTS (NM_025438)	TTS (NM_025438)	-6904.0	NM_027494	70650.0	Mm.279427	NM_027494	ENSMUSG00000029427	Zcchc8	5730565F05Rik	zinc finger, CCHC domain containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-6382924-2	chr1	6382824	6383024	+	890.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001195732, intron 1 of 4)	CpG	23593.0	NM_001195732	620393.0	Mm.388992	NM_001195732	ENSMUSG00000087247	Alkal1	EG620393|Fam150a	ALK and LTK ligand 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-136552525-2	chr1	136552425	136552625	+	733.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72376.0	NM_177643	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191741237-4	chr1	191741133	191741333	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001134829, intron 2 of 7)	intron (NM_001134829, intron 2 of 7)	22838.0	NM_001134829	226856.0	Mm.277958	NM_172266	ENSMUSG00000026623	Lpgat1	AI649174|AW112037|BC013667	lysophosphatidylglycerol acyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-75415440-2	chr18	75415340	75415540	+	939.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48075.0	NM_001042660	17131.0	Mm.34407	NM_008543	ENSMUSG00000025880	Smad7	Madh7	SMAD family member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-143414412-2	chr4	143414312	143414512	+	799.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355724, intron 1 of 3)	intron (NM_001355724, intron 1 of 3)	1986.0	NM_001355724	242736.0	Mm.275953	NM_172877	ENSMUSG00000046862	Pramef8	4732496O08Rik|AU023234	PRAME family member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-131354611-3	chr6	131354503	131354703	+	806.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33847.0	NM_139117	56449.0	Mm.458000	NM_011733	ENSMUSG00000030189	Ybx3	Csda|Dpba|MSY3|MSY4|Yb2|dbpA|oxyR	Y box protein 3	protein-coding	2.50243621819078	1.92600449388918	2.92519589023339	2.19826089115219	1.86546101220311	1.25537124001516	1.22446036142734	2.21018919011183	-1.79937376507695	0.0755371166207197	0.416495553867369
Merged-chr1-190979340-4	chr1	190979231	190979431	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144879)	promoter-TSS (NM_144879)	-35.0	NR_027352	226841.0	Mm.22856	NM_144879	ENSMUSG00000037568	Vash2	B130052G07Rik	vasohibin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-43642458-4	chr6	43642289	43642489	+	828.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013861, intron 2 of 8)	L2|LINE|L2	23889.0	NM_013861	29807.0	Mm.320979	NM_013861	ENSMUSG00000029735	Tpk1	-	thiamine pyrophosphokinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80209945-4	chr7	80209849	80210049	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360135, intron 1 of 13)	L4_B_Mam|LINE|RTE-X	11508.0	NM_001360135	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	1.69380163827709	1.75745250663823	1.53701627590326	1.49709289856727	1.81981076731099	2.04968052578322	1.11968149337875	2.50533517694225	1.02734976075654	0.338435856942683	0.838823800351667
Merged-chr8-122870518-4	chr8	122870421	122870621	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	22147.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	4.01755444599939	3.45807546650286	3.68656952675112	3.58436885354585	2.76854229029584	3.91399878481915	3.26146471051927	4.40158314742636	0.0353741373756085	0.949381302074685	0.998431161219273
Merged-chr4-102621284-2	chr4	102621184	102621384	+	600.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	31441.0	NM_001177981	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91484261-3	chr16	91484119	91484319	+	921.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010508)	promoter-TSS (NM_010508)	-996.0	NM_010508	15975.0	Mm.502	NM_010508	ENSMUSG00000022967	Ifnar1	Ifar|Ifnar|Ifrc|Infar	interferon (alpha and beta) receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-93233226-1	chr13	93233126	93233326	+	540.0	f1_balb.idr	Intergenic	Intergenic	-40809.0	NM_001361537	100715.0	Mm.242865	NM_133905	ENSMUSG00000042167	Papd4	8030446C20Rik|AI649009|GLD-2|Gld2	PAP associated domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-29143802-2	chr15	29143702	29143902	+	773.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	569602.0	NR_039542	100628607.0		NR_039542	ENSMUSG00000092639	Mir3964	mmu-mir-3964|mu-mir-3964	microRNA 3964	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-62857700-4	chr16	62857611	62857811	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011173, intron 1 of 14)	intron (NM_011173, intron 1 of 14)	3404.0	NM_011173	19128.0	Mm.127156	NM_011173	ENSMUSG00000022912	Pros1	AW214361	protein S (alpha)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52912104-1	chr13	52912004	52912204	+	541.0	f1_balb.idr	intron (NM_016709, intron 3 of 9)	intron (NM_016709, intron 3 of 9)	17573.0	NM_016709	11992.0	Mm.252034	NM_016709	ENSMUSG00000021460	Auh	C77140|W91705	AU RNA binding protein/enoyl-coenzyme A hydratase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114568078-2	chr11	114567978	114568178	+	638.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-100465.0	NM_023372	67671.0	Mm.238817	NM_023372	ENSMUSG00000057322	Rpl38	0610025G13Rik|Rbt|Ts|Tss	ribosomal protein L38	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-9009912-4	chr4	9009815	9010015	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	258591.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-73454874-4	chr2	73454750	73454950	+	857.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289722)	promoter-TSS (NM_001289722)	-961.0	NM_001289722	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-131596055-2	chr5	131595955	131596155	+	915.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177047, intron 5 of 19)	intron (NM_177047, intron 5 of 19)	-181337.0	NR_152164	545809.0	Mm.357553	NR_152164	ENSMUSG00000105387	Gm29681	Gm42590	predicted gene, 29681	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-25896964-4	chr15	25896870	25897070	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034851, intron 3 of 8)	intron (NM_001034851, intron 3 of 8)	-36582.0	NM_001277318	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-79816638-3	chr9	79816554	79816754	+	866.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357352, intron 5 of 5)	intron (NM_001357352, intron 5 of 5)	14328.0	NM_001357354	70598.0	Mm.23049	NM_001081243	ENSMUSG00000034898	Filip1	5730485H21Rik|AI843021	filamin A interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-100887374-2	chr4	100887274	100887474	+	743.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198037, intron 2 of 26)	MTD|LTR|ERVL-MaLR	110695.0	NM_198037	320508.0	Mm.151962	NM_198037	ENSMUSG00000028532	Cachd1	1190007F10Rik|AI852726|B430218L07Rik|Vwcd1|mKIAA1573	cache domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127643892-4	chr10	127643800	127644000	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009284, intron 1 of 21)	intron (NM_009284, intron 1 of 21)	914.0	NM_009284	20852.0	Mm.121721	NM_009284	ENSMUSG00000002147	Stat6	-	signal transducer and activator of transcription 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141454710-3	chr4	141454611	141454811	+	860.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009541, intron 2 of 15)	intron (NM_009541, intron 2 of 15)	10038.0	NM_009541	22642.0	Mm.389590	NM_009541	ENSMUSG00000006215	Zbtb17	AA589413|Lp-1|Miz1|Zfp100|mZ13	zinc finger and BTB domain containing 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-47216485-4	chr13	47216392	47216592	+	892.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146042, intron 2 of 7)	intron (NM_146042, intron 2 of 7)	22489.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	1.8372998052367	1.53036342319157	1.84549507056212	1.45649891661009	2.40025926182372	2.20334807664828	2.0029575237706	2.5223728225369	1.72624001422617	0.0690735135643708	0.394890731771913
Merged-chr10-82763595-4	chr10	82763454	82763654	+	913.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010914, intron 1 of 7)	CpG	587.0	NM_010914	18045.0	Mm.245998	NM_010914	ENSMUSG00000020248	Nfyb	AA985999|Cbf-A	nuclear transcription factor-Y beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100178576-3	chr7	100178501	100178701	+	780.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001190950)	promoter-TSS (NM_001190950)	-82.0	NM_001360467	57442.0	Mm.282386	NM_020574	ENSMUSG00000035165	Kcne3	2210017H05Rik|MiRP2	potassium voltage-gated channel, Isk-related subfamily, gene 3	protein-coding	1.14175425209231	1.47713315814391	0.526778582651362	0.513929687658661	0.878264948465945	2.06539381228909	0.530393518908261	0.516197807693427	0.718893752095387	0.655622100432535	0.988480468412152
Merged-chr9-66082175-4	chr9	66082059	66082259	+	999.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12428.0	NM_001025612	382083.0	Mm.477103	NM_001025612	ENSMUSG00000039452	Snx22	Gm1120	sorting nexin 22	protein-coding	2.82879428806509	2.56120948678067	3.58721278173534	2.54253707048588	3.09158136691659	2.5804629577894	3.61363214389369	2.55598345049818	0.142696755310384	0.837691555601295	0.998431161219273
Merged-chr14-120476299-1	chr14	120476199	120476399	+	695.0	f0_balb.idr	Intergenic	Intergenic	-2162.0	NM_029519	76108.0	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-83839249-2	chr3	83839149	83839349	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011905, intron 2 of 2)	intron (NM_011905, intron 2 of 2)	2359.0	NM_011905	24088.0	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-84221642-2	chr15	84221542	84221742	+	727.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10401.0	NM_133167	170736.0	Mm.323892	NM_133167	ENSMUSG00000022438	Parvb	AI595373|AW742462|D15Gsk1|affixin	parvin, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-18278912-2	chr9	18278812	18279012	+	857.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	-13355.0	NM_025844	66917.0	Mm.103534	NM_025844	ENSMUSG00000001774	Chordc1	1110001O09Rik|AA409036|Chp-1|morgana	cysteine and histidine-rich domain (CHORD)-containing, zinc-binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-42054371-2	chr13	42054271	42054471	+	564.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007772, intron 1 of 8)	intron (NM_007772, intron 1 of 8)	2350.0	NM_007772	110521.0	Mm.4808	NM_007772	ENSMUSG00000021366	Hivep1	Cryabp1	human immunodeficiency virus type I enhancer binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-60748697-4	chr18	60748587	60748787	+	917.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008306)	promoter-TSS (NM_008306)	-22.0	NM_008306	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-35842147-4	chr11	35841979	35842179	+	908.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_170779, intron 20 of 22)	intron (NM_170779, intron 20 of 22)	-7551.0	NM_025936	104458.0	Mm.284906	NM_025936	ENSMUSG00000018848	Rars	2610011N19Rik|2610037E21Rik|AL033339|AW985894	arginyl-tRNA synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-149543350-4	chr4	149543247	149543447	+	811.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023465, intron 2 of 4)	intron (NM_023465, intron 2 of 4)	-1770.0	NM_001141930	67087.0	Mm.299735	NM_023465	ENSMUSG00000028988	Ctnnbip1	1110008O09Rik|2310001I19Rik|AW457332|Catnbip1|Icat	catenin beta interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-91186487-4	chr15	91186463	91186663	+	941.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358967, intron 2 of 9)	intron (NM_001358967, intron 2 of 9)	5444.0	NM_011994	26874.0	Mm.295456	NM_011994	ENSMUSG00000055782	Abcd2	ABC39|ALDL1|ALDR|ALDRP	ATP-binding cassette, sub-family D (ALD), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-178869429-2	chr2	178869329	178869529	+	608.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	438914.0	NM_198656	381409.0	Mm.330860	NM_198656	ENSMUSG00000039155	Cdh26	Gm1010	cadherin-like 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-152283366-4	chr4	152283263	152283463	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_178406, exon 6 of 6)	exon (NM_178406, exon 6 of 6)	8299.0	NM_008237	15207.0	Mm.3516	NM_008237	ENSMUSG00000028946	Hes3	Hes-3|bHLHb43	hes family bHLH transcription factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-116075863-4	chr4	116075765	116075965	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025641)	promoter-TSS (NM_025641)	596.0	NM_153521	230654.0	Mm.3655	NM_153521	ENSMUSG00000028703	Lrrc41	AA409966|AW555107|D630045E04Rik|D730026A16Rik|MUF1	leucine rich repeat containing 41	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-37871404-4	chr16	37871282	37871482	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177093, intron 1 of 3)	intron (NM_177093, intron 1 of 3)	2982.0	NM_177093	320184.0	Mm.390882	NM_177093	ENSMUSG00000034158	Lrrc58	1810012N18Rik|C330018J07Rik	leucine rich repeat containing 58	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-121632091-4	chr9	121631906	121632106	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026915, intron 1 of 5)	intron (NM_026915, intron 1 of 5)	9587.0	NM_026915	69032.0	Mm.33351	NM_026915	ENSMUSG00000032530	Lyzl4	1810009N24Rik|AI504271|Lyc4|Lyza	lysozyme-like 4	protein-coding	1.17417496729665	1.27050933116073	2.64327560278833	2.30590545631983	1.99613304462193	2.36948015177876	2.03587136569371	2.41278282178048	0.453327595930444	0.665046514951155	0.992297564393899
Merged-chr17-51408551-4	chr17	51408445	51408645	+	975.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_037268, intron 3 of 4)	intron (NR_037268, intron 3 of 4)	39724.0	NR_046166	328837.0	Mm.236143	NR_046166		C330011F03Rik	C330011F03	RIKEN cDNA C330011F03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69977742-2	chr11	69977642	69977842	+	552.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_018740, intron 4 of 8)	intron (NM_018740, intron 4 of 8)	2588.0	NM_001253700	54351.0	Mm.13430	NM_018740	ENSMUSG00000018565	Elp5	Derp6|Rai12	elongator acetyltransferase complex subunit 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-98674869-7	chr12	98674772	98674972	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46730.0	NM_001289574	104871.0	Mm.210053	NM_178914	ENSMUSG00000021007	Spata7	AI661438|B230306G18Rik|HSD3	spermatogenesis associated 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-60946806-4	chr19	60946704	60946904	+	998.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018869, intron 1 of 15)	intron (NM_018869, intron 1 of 15)	57055.0	NM_018869	14773.0	Mm.279400	NM_018869	ENSMUSG00000003228	Grk5	Gprk5	G protein-coupled receptor kinase 5	protein-coding	4.01863994457213	4.1102764566229	3.9035667834981	4.50368294262651	4.88504410390475	4.27426641238248	4.13881987435478	3.27854313857469	0.153869694587882	0.743777516667896	0.998431161219273
Merged-chr11-10203388-2	chr11	10203288	10203488	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17B|LTR|ERVK	-910628.0	NM_177033	319922.0	Mm.337851	NM_177033	ENSMUSG00000050830	Vwc2	A930041G11Rik|G11|PSST739|UNQ739|cradin	von Willebrand factor C domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-11278988-4	chr2	11278928	11279128	+	858.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008859, intron 13 of 17)	intron (NM_008859, intron 13 of 17)	-60461.0	NR_040369	100503147.0	Mm.91961	NR_040369	ENSMUSG00000086006	Gm13293	-	predicted gene 13293	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-103346880-4	chr14	103346779	103346979	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207215)	promoter-TSS (NM_207215)	-79.0	NM_207215	105689.0	Mm.6478	NM_207215	ENSMUSG00000033004	Mycbp2	AU023734|AW107953|AW546647|C130061D10Rik|Pam|Phr1|R75243	MYC binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-37509545-1	chr13	37509445	37509645	+	665.666687	f0_balb.idr	Intergenic	Intergenic	164200.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-103580384-3	chr8	103580294	103580494	+	906.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-23405.0	NR_045730	71058.0	Mm.67707	NR_045730	ENSMUSG00000110336	4933400L20Rik	-	RIKEN cDNA 4933400L20 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-38027040-4	chr19	38026948	38027148	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302140, intron 1 of 53)	intron (NM_001302140, intron 1 of 53)	16529.0	NM_001099634	226101.0	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-35743444-3	chr5	35743347	35743547	+	945.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3460.0	NM_001359895	231147.0	Mm.290429	NM_194344	ENSMUSG00000036553	Sh3tc1	4631428G15|BC024909	SH3 domain and tetratricopeptide repeats 1	protein-coding	0.702891959019253	0.77378999296603	2.45700121241805	1.73945511381381	0.707606575793577	1.6344017794722	1.70099734570509	0.736940950173332	-1.01391059760297	0.489726604677749	0.934238891709291
Merged-chr10-60711614-2	chr10	60711514	60711714	+	553.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_023596)	TTS (NM_023596)	-15124.0	NM_023370	22295.0	Mm.440327	NM_023370	ENSMUSG00000012819	Cdh23	4930542A03Rik|USH1D|ahl|ahl1|bob|bus|mdfw|nmf112|nmf181|nmf252|sals|v	cadherin 23 (otocadherin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-72201679-4	chr2	72201559	72201759	+	746.875	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355478, intron 11 of 26)	intron (NM_001355478, intron 11 of 26)	-83978.0	NM_023057	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	3.245368603615	4.18331350929903	4.05152769273724	3.89618595104698	1.35313547069556	1.88964115838003	2.27916274701414	2.80027059329234	-2.89780026575159	4.67055779670119e-05	0.00165139545515189
Merged-chr17-73933845-1	chr17	73933745	73933945	+	752.0	f0_balb.idr	intron (NM_011723, intron 6 of 35)	intron (NM_011723, intron 6 of 35)	16351.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153562441-3	chr2	153562352	153562552	+	756.733337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-32481.0	NM_001134300	329540.0	Mm.50600	NM_001001986	ENSMUSG00000061411	Nol4l	4931410H15|8430427H17Rik|AI429157|Gm1636	nucleolar protein 4-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-10583548-3	chr15	10583433	10583633	+	907.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356534, intron 12 of 16)	intron (NM_001356534, intron 12 of 16)	-16760.0	NR_033541	100038608.0	Mm.450744	NR_033541	ENSMUSG00000115667	Gm10389	-	predicted gene 10389	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-20899129-4	chr11	20899029	20899229	+	995.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68021.0	NM_173752	216551.0	Mm.76694	NM_173752	ENSMUSG00000042363	Lgalsl	1110067D22Rik|A530071M23|Grpa|Hspc159|Lgalsla	lectin, galactoside binding-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-67272326-2	chr7	67272226	67272426	+	666.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357325, intron 4 of 11)	RSINE1|SINE|B4	49710.0	NM_001191051	75099.0	Mm.121691	NM_175215	ENSMUSG00000043831	Lysmd4	4930506D23Rik	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-24479054-3	chr13	24478971	24479171	+	729.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	63949.0	NM_001284520	12763.0	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-14750982-2	chr9	14750882	14751082	+	713.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_010242, exon 1 of 1)	exon (NM_010242, exon 1 of 1)	1140.0	NM_010242	14345.0	Mm.63450	NM_010242	ENSMUSG00000049307	Fut4	AI451562|CD15|FAL|FucT-IV|LeX|SSEA-1|Ssea1	fucosyltransferase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-87751200-4	chr11	87751100	87751300	+	991.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5664.0	NR_029555	387160.0		NR_029555	ENSMUSG00000105196	Mir142	Mirn142|miR-142|mir-142a|mmu-mir-142|mmu-mir-142a	microRNA 142	ncRNA	2.97534945925291	2.23649888677816	2.4207990501515	2.88233634460649	1.85723378942857	1.3813382579998	2.83472782789006	1.56593765740818	-1.3172410706686	0.151423983674479	0.604520282650752
Merged-chr2-118597774-4	chr2	118597669	118597869	+	994.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009773)	promoter-TSS (NM_009773)	-442.0	NM_009773	12236.0	Mm.29133	NM_009773	ENSMUSG00000040084	Bub1b	AU045529|BUBR1	BUB1B, mitotic checkpoint serine/threonine kinase	protein-coding	5.21618516704127	5.32107117651764	5.1282069669753	5.77063528992688	5.22734665929539	5.08153600963807	5.56707485349561	5.19107558144195	-0.120720930112411	0.682591396357118	0.995882295196263
Merged-chr11-111067031-4	chr11	111066930	111067130	+	953.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008425, intron 1 of 1)	intron (NM_008425, intron 1 of 1)	866.0	NM_008425	16518.0	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81846432-1	chr15	81846332	81846532	+	653.0	f1_c57bl6.idr	Intergenic	Intergenic	11894.0	NM_020507	57259.0	Mm.323595	NM_020507	ENSMUSG00000048546	Tob2	2900090N22Rik|4930545K18Rik|AV071822|mKIAA1663	transducer of ERBB2, 2	protein-coding	-1.25021552794693	-1.22372444510912	-1.23398552386891	-1.08341697395875	-0.979406777908347	-1.06004721317433	-1.23166264055413	-1.2409055362532	1.26162710809088	0.684510733032232	1
Merged-chr17-34199090-2	chr17	34198990	34199190	+	993.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010724, intron 1 of 5)	intron (NM_010724, intron 1 of 5)	895.0	NM_010724	16913.0	Mm.180191	NM_010724	ENSMUSG00000024338	Psmb8	Lmp-7|Lmp7	proteasome (prosome, macropain) subunit, beta type 8 (large multifunctional peptidase 7)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-52011779-2	chr11	52011679	52011879	+	729.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166657, intron 3 of 7)	intron (NM_001166657, intron 3 of 7)	7558.0	NM_001166653	213084.0	Mm.280557	NM_153785	ENSMUSG00000020389	Cdkl3	AI852479|B230379H01Rik	cyclin-dependent kinase-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-90881885-4	chr5	90881790	90881990	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9355.0	NM_008176	14825.0	Mm.21013	NM_008176	ENSMUSG00000029380	Cxcl1	Fsp|Gro1|KC|Mgsa|N51|Scyb1|gro	chemokine (C-X-C motif) ligand 1	protein-coding	2.2714405694959	3.49890391580995	3.72389459147133	2.41033763808392	2.29300743438984	3.52449533475582	4.01883239084998	2.42419683846654	0.224056207333224	0.761687723479113	0.998431161219273
Merged-chr3-123053336-3	chr3	123053208	123053408	+	573.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18321.0	NM_001355462	59006.0	Mm.141157	NM_021503	ENSMUSG00000028116	Myoz2	1110012I24Rik|Fatz-2|Myozl2	myozenin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118680882-1	chr9	118680782	118680982	+	596.0	f1_balb.idr	intron (NM_133721, intron 11 of 27)	intron (NM_133721, intron 11 of 27)	-30810.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	-1.18378942727406	-1.15669478905697	-0.457913181653105	-1.17806440097404	-1.18323730008524	-1.15415234459186	-1.16577117532349	-1.17633933179771	-2.81844548480871	0.412768592413622	1
Merged-chr7-127206834-4	chr7	127206740	127206940	+	999.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144522, intron 1 of 8)	intron (NM_144522, intron 1 of 8)	1628.0	NM_144522	68449.0	Mm.41420	NM_144522	ENSMUSG00000042492	Tbc1d10b	1110003P22Rik|C87963	TBC1 domain family, member 10b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115195141-2	chr11	115195041	115195241	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033393, intron 2 of 9)	intron (NM_001033393, intron 2 of 9)	7654.0	NM_001033393	320534.0	Mm.260587	NM_001033393	ENSMUSG00000045980	Tmem104	C630005D06Rik|mFLJ00021	transmembrane protein 104	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-38072248-1	chr2	38072148	38072348	+	620.0	f0_balb.idr	intron (NM_146122, intron 5 of 21)	intron (NM_146122, intron 5 of 21)	215136.0	NM_146122	227801.0	Mm.314245	NM_146122	ENSMUSG00000035392	Dennd1a	6030446I19Rik|connecdenn	DENN/MADD domain containing 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-31834373-2	chr16	31834273	31834473	+	882.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357281, intron 11 of 22)	intron (NM_001357281, intron 11 of 22)	-44437.0	NM_013900	30060.0	Mm.30988	NM_013900	ENSMUSG00000022780	Meltf	CD228|MTf|Mfi2	melanotransferrin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36369194-4	chr1	36369089	36369289	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310513)	promoter-TSS (NM_001310513)	-8.0	NM_001310513	226976.0	Mm.24734	NM_172652	ENSMUSG00000010453	Kansl3	4632411B12Rik|4932435K23|AI431067|AI647574|C85723|Kiaa1310|mKIAA1310	KAT8 regulatory NSL complex subunit 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-33669788-4	chr1	33669691	33669891	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033199)	promoter-TSS (NR_033199)	3.0	NM_008922	19076.0	Mm.27705	NM_008922	ENSMUSG00000026134	Prim2	AI323589	DNA primase, p58 subunit	protein-coding	5.59271428825735	4.6864654458078	4.53429588223401	5.27152891405907	5.33423510663719	5.06274804956432	5.31526691291225	5.69253021965569	0.314845517435644	0.34320241629299	0.843915000140038
Merged-chr7-105750824-4	chr7	105750706	105750906	+	874.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009906, intron 3 of 12)	intron (NM_009906, intron 3 of 12)	1429.0	NM_009906	12751.0	Mm.20837	NM_009906	ENSMUSG00000030894	Tpp1	Cln2|LPIC|TPP-1|TPP-I	tripeptidyl peptidase I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-24039640-4	chr5	24039540	24039740	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8950.0	NM_053090	84652.0	Mm.304976	NM_053090	ENSMUSG00000028995	Fam126a	AB030242|Drctnnb1a	family with sequence similarity 126, member A	protein-coding	5.72992714991129	5.91807583919956	5.9538778737722	5.35952973161805	5.57221043342828	6.09014456002982	5.47035667456264	5.29419402298896	-0.138194512132949	0.615673864753027	0.977352076822579
Merged-chr7-110221715-4	chr7	110221585	110221785	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009302)	promoter-TSS (NM_009302)	-18.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-113665533-2	chr6	113665433	113665633	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 2 of 11)	intron (NM_001113553, intron 2 of 11)	27066.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-87236488-2	chr12	87236388	87236588	+	603.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027744, intron 2 of 7)	intron (NM_027744, intron 2 of 7)	2113.0	NM_027744	71275.0	Mm.79198	NM_027744	ENSMUSG00000072919	Noxred1	4933437F05Rik	NADP+ dependent oxidoreductase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-90894417-4	chr5	90894328	90894528	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3183.0	NM_008176	14825.0	Mm.21013	NM_008176	ENSMUSG00000029380	Cxcl1	Fsp|Gro1|KC|Mgsa|N51|Scyb1|gro	chemokine (C-X-C motif) ligand 1	protein-coding	0.76819642243937	0.813071957947921	1.7779764296978	1.62810100372646	1.23358630340198	0.816279677852517	1.34692726485681	1.53783049862124	-0.295709576358308	0.836226618395261	0.998431161219273
Merged-chr15-95825346-2	chr15	95825246	95825446	+	860.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_155276, intron 1 of 1)	intron (NR_155276, intron 1 of 1)	4726.0	NR_155277	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5024519-3	chr19	5024364	5024564	+	938.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007854, intron 1 of 11)	CpG	458.0	NM_007854	13340.0	Mm.4930	NM_007854	ENSMUSG00000024891	Slc29a2	Der12|Ent2|Hnp36	solute carrier family 29 (nucleoside transporters), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-140784816-4	chr2	140784728	140784928	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013802, intron 3 of 18)	Lx5|LINE|L1	-113352.0	NM_178382	71436.0	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-75770883-4	chr2	75770780	75770980	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61297.0	NM_172666	228061.0	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-34728493-1	chr2	34728393	34728593	+	541.0	f1_balb.idr	exon (NM_001356441, exon 4 of 27)	exon (NM_001356441, exon 4 of 27)	26739.0	NM_001356441	66691.0	Mm.156452	NM_025709	ENSMUSG00000026867	Gapvd1	2010005B09Rik|4432404J10Rik|AW108497|Gapex-5|RAP6|RME-6|mKIAA1521	GTPase activating protein and VPS9 domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30242756-4	chr2	30242634	30242834	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177725, intron 2 of 3)	intron (NM_177725, intron 2 of 3)	4965.0	NM_177725	241296.0	Mm.389232	NM_177725	ENSMUSG00000007476	Lrrc8a	Lrrc8|mKIAA1437	leucine rich repeat containing 8A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-115815212-2	chr3	115815112	115815312	+	819.916687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	72847.0	NR_027894	68161.0	Mm.392043	NR_015487	ENSMUSG00000054426	A930005H10Rik	-	RIKEN cDNA A930005H10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21729424-2	chr9	21729324	21729524	+	903.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252659, intron 1 of 17)	intron (NM_001252659, intron 1 of 17)	5848.0	NM_010700	16835.0	Mm.3213	NM_010700	ENSMUSG00000032193	Ldlr	Hlb301	low density lipoprotein receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-129535748-2	chr6	129535648	129535848	+	885.599976	f1_balb.idr|f1_c57bl6.idr	intron (NM_020590, intron 1 of 3)	intron (NM_020590, intron 1 of 3)	-2464.0	NR_045270	100504641.0	Mm.398286	NR_045270	ENSMUSG00000097675	1700101I11Rik	-	RIKEN cDNA 1700101I11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-42396254-4	chr6	42396184	42396384	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-3954.0	NM_001001452	387514.0	Mm.377921	NM_001001452	ENSMUSG00000046652	Tas2r143	Gm1404|Tas2r43|mt2r36	taste receptor, type 2, member 143	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-22283001-3	chr10	22282902	22283102	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177775, intron 1 of 5)	intron (NM_001177775, intron 1 of 5)	9528.0	NM_001177775	667281.0	Mm.484254	NM_001177775	ENSMUSG00000075297	H60b	EG667281	histocompatibility 60b	protein-coding	0.954753343369324	1.06971803799958	1.03436082876159	1.68925415367725	2.2161718629197	1.83351054217548	2.84836080756972	3.10327892291035	3.87569037268391	0.00120819289289315	0.0225792808861869
Merged-chr16-3920996-4	chr16	3920905	3921105	+	887.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029738, intron 6 of 11)	intron (NM_029738, intron 6 of 11)	11996.0	NM_029738	76779.0	Mm.458921	NM_029738	ENSMUSG00000014232	Cluap1	2310030D15Rik|2610111M03Rik	clusterin associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-114925730-3	chr9	114925636	114925836	+	621.916687	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	intron (NM_175380, intron 1 of 7)	intron (NM_175380, intron 1 of 7)	8251.0	NM_175380	333433.0	Mm.38198	NM_175380	ENSMUSG00000050627	Gpd1l	2210409H23Rik|D9Ertd660e	glycerol-3-phosphate dehydrogenase 1-like	protein-coding	2.54520059716762	3.11238526904478	2.77434789251752	2.98350984179735	1.61015620305536	1.58011618002499	1.24319425597522	1.4777816372947	-3.57733396243558	0.000349591348875534	0.00831122259671465
Merged-chr15-59651982-7	chr15	59651897	59652097	+	787.571411	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144549, intron 2 of 2)	intron (NM_144549, intron 2 of 2)	3343.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-102011064-6	chr5	102010956	102011156	+	921.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 2 of 66)	intron (NM_172882, intron 2 of 66)	58865.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27555738-4	chr17	27555618	27555818	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166536)	promoter-TSS (NM_001166536)	-856.0	NM_001166536	15361.0	Mm.4438	NM_016660	ENSMUSG00000046711	Hmga1	AL023995|Hmga1a|Hmga1b|Hmgi|Hmgiy|Hmgy	high mobility group AT-hook 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140768532-4	chr5	140768440	140768640	+	894.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010302, intron 2 of 3)	intron (NM_010302, intron 2 of 3)	44413.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-36947202-4	chr17	36947040	36947240	+	873.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001099632, exon 4 of 4)	exon (NM_001099632, exon 4 of 4)	4089.0	NM_001099632	386454.0	Mm.105324	NM_001099632	ENSMUSG00000036492	Rnf39	BC038661|Gm1786|Gm1787|Gm320|LIRF	ring finger protein 39	protein-coding	1.49393091394888	1.20193930336486	1.60760706812437	2.27822063008414	2.32880793683041	2.12969049246199	2.27258789008584	1.57342853225279	1.05700811323857	0.3091724667689	0.80968813801512
Merged-chr6-145340842-4	chr6	145340748	145340948	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-46777.0	NR_003625	381827.0	Mm.179075	NM_001001987		1700073E17Rik	-	ribosomal protein L7 pseudogene	pseudo	7.44519913286032	6.65494739683394	7.49347418327443	7.04167267154555	7.12928389713631	7.66810705728358	7.6510797299798	7.40545001149516	0.285022369963713	0.145687821489768	0.596091332081597
Merged-chr16-91477819-4	chr16	91477722	91477922	+	984.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	-7393.0	NM_010508	15975.0	Mm.502	NM_010508	ENSMUSG00000022967	Ifnar1	Ifar|Ifnar|Ifrc|Infar	interferon (alpha and beta) receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127164783-4	chr10	127164689	127164889	+	971.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008080)	promoter-TSS (NM_008080)	-367.0	NR_045166	14421.0	Mm.386762	NM_008080	ENSMUSG00000006731	B4galnt1	4933429D13Rik|Gal-NAc-T|GalNAc-T|GalNAcT|Galgt1|Ggm-2|Ggm2	beta-1,4-N-acetyl-galactosaminyl transferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-31040707-4	chr17	31040622	31040822	+	940.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16972.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-100779584-4	chr12	100779458	100779658	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145448, intron 1 of 12)	intron (NM_145448, intron 1 of 12)	501.0	NM_145448	217830.0	Mm.218590	NM_145448	ENSMUSG00000021185	Dglucy	9030617O03Rik	D-glutamate cyclase	protein-coding	3.27491780362771	3.07693775588801	2.67145743990335	2.59789084757819	2.59161754680142	2.34636525401162	2.80383977937437	2.6109814341133	-0.668326934926877	0.338215585428393	0.838472973941867
Merged-chr14-31583279-4	chr14	31583168	31583368	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5885.0	NM_009937	382864.0	Mm.239821	NM_009937	ENSMUSG00000057606	Colq	A130034K24Rik	collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150488304-4	chr4	150488195	150488395	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 7 of 22)	intron (NM_001085492, intron 7 of 22)	163879.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	5.57772241866976	6.14106084334524	5.24184634876697	5.445243625063	5.7332345309543	5.83051804740729	5.61570252776869	5.963532380983	0.173326896581832	0.522086208229246	0.947836760490745
Merged-chr4-6030329-2	chr4	6030229	6030429	+	644.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-160776.0	NM_026534	68053.0	Mm.404043	NM_026534	ENSMUSG00000028243	Ubxn2b	3110003A22Rik|6430407D20Rik|AI451665|p37	UBX domain protein 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-124803654-2	chr4	124803554	124803754	+	608.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008636, intron 1 of 10)	intron (NM_008636, intron 1 of 10)	1105.0	NM_008636	17764.0	Mm.272397	NM_008636	ENSMUSG00000028890	Mtf1	MTF-1|Thyls	metal response element binding transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-84834933-4	chr16	84834835	84835035	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302216)	promoter-TSS (NM_001302216)	41.0	NM_001358500	11957.0	Mm.353	NM_016755	ENSMUSG00000022890	Atp5j	CF6	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52586726-2	chr13	52586626	52586826	+	853.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001198977, intron 1 of 13)	intron (NM_001198977, intron 1 of 13)	3289.0	NM_001198977	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-110972798-1	chr11	110972698	110972898	+	555.0	f1_c57bl6.idr	intron (NM_010604, intron 1 of 1)	MTA_Mm|LTR|ERVL-MaLR	4765.0	NM_001252207	16517.0	Mm.30176	NM_010604	ENSMUSG00000051497	Kcnj16	6430410F18Rik|AI132396|Kir5.1	potassium inwardly-rectifying channel, subfamily J, member 16	protein-coding	1.42713409107185	1.78038210516091	2.66686684119419	1.15118847893735	1.44029983962962	0.959893591760834	0.936074985601455	2.01021870266504	-1.33048893260812	0.276325180112855	0.780449508237767
Merged-chr2-132262432-2	chr2	132262332	132262532	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138651)	promoter-TSS (NM_138651)	-716.0	NM_001291040	110911.0	Mm.284503	NM_138651	ENSMUSG00000058793	Cds2	5730450N06Rik|5730460C18Rik|AI854580|D2Wsu127e	CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-55327422-4	chr9	55327311	55327511	+	894.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172923, intron 1 of 10)	intron (NM_172923, intron 1 of 10)	498.0	NM_001357568	244886.0	Mm.24361	NM_172923	ENSMUSG00000032313	Tmem266	9630029F15|AI118078|HVRP1	transmembrane protein 266	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97508713-3	chr6	97508625	97508825	+	825.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	-20905.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118656294-1	chr9	118656194	118656394	+	543.0	f1_balb.idr	intron (NM_133721, intron 5 of 27)	B4|SINE|B4	49585.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6860982-2	chr19	6860882	6861082	+	553.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2771.0	NM_001081291	78317.0	Mm.329596	NM_198008	ENSMUSG00000047810	Ccdc88b	2610041P08Rik|Ccdc88	coiled-coil domain containing 88B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-101331347-4	chr4	101331250	101331450	+	914.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15677.0	NR_029537	387143.0		NR_029537	ENSMUSG00000065451	Mir101a	Mirn101|Mirn101a|miR-101|mir-101a	microRNA 101a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-146781819-4	chr5	146781658	146781858	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011669, intron 1 of 8)	L1M4|LINE|L1	13198.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-31353641-4	chr6	31353546	31353746	+	949.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45127.0	NR_040300	100503869.0	Mm.370532	NR_040300	ENSMUSG00000086212	Mkln1os	Gm13845	muskelin 1, intracellular mediator containing kelch motifs, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-25544299-2	chr8	25544199	25544399	+	670.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001079909, intron 2 of 16)	intron (NM_001079909, intron 2 of 16)	11784.0	NR_110510	102633315.0	Mm.437828	NR_110510	ENSMUSG00000086134	Gm16159	-	predicted gene 16159	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-5793045-3	chr2	5792963	5793163	+	718.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51971.0	NM_016918	53893.0	Mm.251904	NM_016918	ENSMUSG00000025817	Nudt5	-	nudix (nucleoside diphosphate linked moiety X)-type motif 5	protein-coding	-0.973244663428994	-0.952315594721777	-0.00450891433157474	-0.968117103546747	-0.972477992091202	-0.949249181104308	-0.963262521912125	-0.967581074445158	-3.30458610020401	0.291235735201707	1
Merged-chr16-32247113-4	chr16	32246968	32247168	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173439)	promoter-TSS (NM_173439)	-43.0	NM_173439	268882.0	Mm.256137	NM_173439	ENSMUSG00000035764	Fbxo45	2610017J04Rik|AI463119|BC026799	F-box protein 45	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-102252332-2	chr7	102252211	102252411	+	696.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-2193.0	NM_019566	56212.0	Mm.259795	NM_019566	ENSMUSG00000073982	Rhog	2810426G09Rik|Arhg|Sid10750	ras homolog family member G	protein-coding	-0.227443221718538	-0.213107376501652	-0.0400331293265715	-0.221428486920456	0.255761806023019	-0.212048345683625	-0.216768882262724	0.505378986706765	2.93480125166098	0.218515322903789	1
Merged-chr18-6480021-2	chr18	6479942	6480142	+	734.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_007935, intron 1 of 13)	intron (NM_007935, intron 1 of 13)	10604.0	NR_035446	100316773.0		NR_035446	ENSMUSG00000084514	Mir1893	Mirn1893|mmu-mir-1893	microRNA 1893	ncRNA	0.263225291643579	0.676092512184986	0.280427275076735	0.741432581044108	0.42842702588348	0.290541038155953	1.29283151101015	0.459994417304735	1.01298217583135	0.569711555511778	1
Merged-chr5-64934854-2	chr5	64934754	64934954	+	696.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-1296.0	NM_001276445	21897.0	Mm.273024	NM_030682	ENSMUSG00000044827	Tlr1	-	toll-like receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-75691508-2	chr7	75691408	75691608	+	847.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 14 of 36)	intron (NM_029332, intron 14 of 36)	-156830.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-34538105-4	chr5	34538006	34538206	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011893, intron 1 of 12)	intron (NM_011893, intron 1 of 12)	-5259.0	NM_001145858	24055.0	Mm.5012	NM_011893	ENSMUSG00000054520	Sh3bp2	3BP2	SH3-domain binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-41083208-4	chr3	41083125	41083325	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027558)	promoter-TSS (NM_027558)	-179.0	NM_027558	70804.0	Mm.40321	NM_027558	ENSMUSG00000049940	Pgrmc2	4631434O19Rik|5730409G06Rik|DG6|PMBP	progesterone receptor membrane component 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-51331710-2	chr3	51331610	51331810	+	594.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023502, intron 1 of 9)	intron (NM_023502, intron 1 of 9)	8934.0	NM_001356358	69257.0	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-32445929-4	chr9	32445832	32446032	+	754.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008026, intron 5 of 8)	intron (NM_008026, intron 5 of 8)	51947.0	NM_001168354	56379.0	Mm.390168	NM_019659	ENSMUSG00000041248	Kcnj1	Kir1.1|ROMK|Romk2	potassium inwardly-rectifying channel, subfamily J, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-96620076-5	chr10	96619967	96620167	+	947.405701	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007569, exon 2 of 2)	3' UTR (NM_007569, exon 2 of 2)	3066.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-58131704-2	chr13	58131604	58131804	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3148.0	NM_029872	77134.0	Mm.490274	NM_029872	ENSMUSG00000007836	Hnrnpa0	1110055B05Rik|3010025E17Rik|Hnrpa0|hnRNP A0	heterogeneous nuclear ribonucleoprotein A0	protein-coding	-0.971312285390935	-1.32150654078059	-1.33147993744313	-1.33967238241123	-1.35121754901196	-1.3193452641188	-1.17229511841967	-1.33820593867886	-0.987986103315274	0.773449200295012	1
Merged-chr4-7392675-3	chr4	7392575	7392775	+	898.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-168013.0	NR_040645	71510.0	Mm.410775	NR_040645	ENSMUSG00000086070	8430436N08Rik	-	RIKEN cDNA 8430436N08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-40869334-3	chr13	40869226	40869426	+	588.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023887, intron 1 of 2)	intron (NM_023887, intron 1 of 2)	9558.0	NM_023887	14538.0	Mm.314757	NM_008105	ENSMUSG00000021360	Gcnt2	5330430K10Rik|IGnT|IGnTA|IGnTB|IGnTC	glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	protein-coding	-0.11200074503187	0.357791042116968	-0.240852827474663	0.166584979981556	-0.24871017050529	-0.235657745458467	-0.239919167684623	-0.0830220282977491	-2.76675639487563	0.224750322804226	1
Merged-chr3-16183126-4	chr3	16183012	16183212	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145919)	promoter-TSS (NM_001145919)	-53.0	NM_001358043	229096.0	Mm.23834	NM_172677	ENSMUSG00000047213	Ythdf3	9130022A11Rik	YTH domain family 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-13651831-2	chr9	13651717	13651917	+	571.5	f0_balb.idr|f1_balb.idr	intron (NM_001013813, intron 1 of 3)	intron (NM_001013813, intron 1 of 3)	-10643.0	NM_173776	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-140684693-4	chr4	140684535	140684735	+	859.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16838.0	NM_173867	108911.0	Mm.253	NM_173867	ENSMUSG00000040945	Rcc2	2610510H01Rik|2610529N02Rik|AA536646|AA675016|Td60|mKIAA1470	regulator of chromosome condensation 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-129330671-2	chr7	129330571	129330771	+	700.299988	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080963, intron 5 of 6)	intron (NM_001080963, intron 5 of 6)	73577.0	NM_001080963	381925.0	Mm.39184	NM_001080963	ENSMUSG00000070366	Plpp4	C030048B12Rik|Gm1090|Ppapdc1a	phospholipid phosphatase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-132317592-4	chr1	132317497	132317697	+	964.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195025, intron 1 of 7)	intron (NM_001195025, intron 1 of 7)	1472.0	NM_028778	74137.0	Mm.100666	NM_028778	ENSMUSG00000009772	Nuak2	1200013B22Rik|Omphk2|Snark|mKIAA0537	NUAK family, SNF1-like kinase, 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67059120-2	chr10	67059020	67059220	+	785.299988	f1_balb.idr|f1_c57bl6.idr	intron (NM_178606, intron 2 of 7)	intron (NM_178606, intron 2 of 7)	37868.0	NM_001204915	28193.0	Mm.41272	NM_178606	ENSMUSG00000019873	Reep3	D10Ucla1	receptor accessory protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-44607948-2	chr10	44607848	44608048	+	999.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT2C1|LTR|ERVL	-149200.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-3776520-4	chr16	3776391	3776591	+	819.604126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32392.0	NM_148924	74120.0	Mm.29081	NM_148924	ENSMUSG00000022529	Zfp263	1200014J04Rik|AI326880|AU020888|NT2|mFPM315	zinc finger protein 263	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-75369869-6	chr18	75369720	75369920	+	921.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042660, intron 1 of 3)	intron (NM_001042660, intron 1 of 3)	2455.0	NM_001042660	17131.0	Mm.34407	NM_008543	ENSMUSG00000025880	Smad7	Madh7	SMAD family member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-121108958-2	chr8	121108858	121109058	+	652.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166482)	promoter-TSS (NM_001166482)	-579.0	NM_001166482	234814.0	Mm.31690	NM_172761	ENSMUSG00000031816	Mthfsd	AW049977|BC052066|C920004D05	methenyltetrahydrofolate synthetase domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-44005884-4	chr10	44005785	44005985	+	781.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1039.0	NM_172393	11630.0	Mm.292082	NM_172393	ENSMUSG00000019866	Crybg1	AI462491|AI463325|Aim1	crystallin beta-gamma domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-113589735-4	chr13	113589641	113589841	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28823.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-104403051-2	chr7	104402951	104403151	+	572.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43074.0	NM_001357467	20128.0	Mm.295578	NM_009099	ENSMUSG00000030921	Trim30a	Rpt-1|Rpt1|Trim30	tripartite motif-containing 30A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-75188119-4	chr1	75188018	75188218	+	970.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003917, intron 5 of 15)	intron (NM_001003917, intron 5 of 15)	3892.0	NM_001003917	245860.0	Mm.238266	NM_001003917	ENSMUSG00000033124	Atg9a	AU019532|Apg9l1|Atg9|Atg9l1	autophagy related 9A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-38485654-4	chr15	38485559	38485759	+	924.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4888.0	NR_105916	102465574.0		NR_105916	ENSMUSG00000099110	Mir6951	Gm27765|mmu-mir-6951	microRNA 6951	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-156522314-2	chr1	156522218	156522418	+	786.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVB7_1-LTR_MM|LTR|ERVK	-36469.0	NM_009595	11352.0	Mm.329515	NM_009595	ENSMUSG00000026596	Abl2	AA536808|Abll|Arg	v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)	protein-coding	1.30496715828274	3.22671570255666	2.54854549469569	3.40267967453871	2.56821654930397	2.20285233369251	2.89099448800502	1.86922078422843	-0.772751621217367	0.381220368411757	0.872878240496996
Merged-chr8-72220878-2	chr8	72220732	72220932	+	919.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_026455, intron 2 of 3)	intron (NM_026455, intron 2 of 3)	1102.0	NM_026455	67922.0	Mm.28327	NM_026455	ENSMUSG00000003039	Fam32a	2510049I19Rik|AW822030|OTAG-12|Otag12	family with sequence similarity 32, member A	protein-coding	2.51248703062582	2.16201521733164	2.24796107622765	2.31929955011577	2.33206775618831	3.62949283360712	2.26609333106542	2.03840288213102	0.869123609509803	0.29100090875141	0.795742750399449
Merged-chr2-31087203-3	chr2	31087095	31087295	+	666.955566	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355105, intron 4 of 15)	intron (NM_001355105, intron 4 of 15)	9305.0	NM_001177650	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-113398183-3	chr5	113398069	113398269	+	902.1889039999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40875.0	NM_001012726	503692.0	Mm.348794	NM_001012726	ENSMUSG00000053873	Aym1	-	activator of yeast meiotic promoters 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-127203420-2	chr1	127203320	127203520	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1566.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-22002277-3	chr10	22002150	22002350	+	891.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7584.0	NM_011361	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-94011447-4	chr16	94011330	94011530	+	836.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2593.0	NM_019500	56173.0	Mm.328716	NM_019500	ENSMUSG00000047109	Cldn14	AI851731	claudin 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-77284615-4	chr2	77284517	77284717	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CAAA)n|Simple_repeat|Simple_repeat	-4025.0	NM_175465	228071.0	Mm.27120	NM_175465	ENSMUSG00000042272	Sestd1	1500031J16Rik|A930010O20|Solo/Trio8	SEC14 and spectrin domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3890950-2	chr12	3890850	3891050	+	899.900024	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153743)	promoter-TSS (NM_153743)	-794.0	NM_153743	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35238706-2	chr17	35238606	35238806	+	569.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001347351)	TTS (NM_001347351)	2110.0	NM_023179	66237.0	Mm.396107	NM_023179	ENSMUSG00000024403	Atp6v1g2	1500002D01Rik|Atp6g2|NG38|VAG2	ATPase, H+ transporting, lysosomal V1 subunit G2	protein-coding	-1.2053708581427	-1.18100821459937	-0.881515362540839	-1.04187498090199	-1.06251160509491	-1.17877197108391	-1.18899148039371	-1.19828685408236	-1.31174638222162	0.672144866806029	1
Merged-chr1-171044729-5	chr1	171044640	171044840	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14654.0	NM_001356511	14131.0	Mm.22119	NM_010188	ENSMUSG00000059498	Fcgr3	CD16	Fc receptor, IgG, low affinity III	protein-coding	5.05006134488076	4.11948426724738	4.36861750928292	4.92908957584064	4.92516665711092	3.70106177401133	4.15458344485644	4.77424397742855	-0.241046765415607	0.569032112085991	0.962718661854691
Merged-chr9-108848947-2	chr9	108848847	108849047	+	588.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001359573, exon 35 of 36)	exon (NM_001359573, exon 35 of 36)	-5096.0	NM_134420	171429.0	Mm.45201	NM_134420	ENSMUSG00000023259	Slc26a6	B930010B04Rik|CFEX|Pat-1|Pat1	solute carrier family 26, member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-85596822-1	chr13	85596722	85596922	+	953.0	f0_balb.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-307336.0	NM_145452	218397.0	Mm.259653	NM_145452	ENSMUSG00000021549	Rasa1	Gap|RasGAP|Rasa	RAS p21 protein activator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-117916635-3	chr4	117916573	117916773	+	677.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1674.0	NM_146152	230673.0	Mm.287810	NM_146152	ENSMUSG00000033365	Ipo13	Imp13|Kap13|Ranbp13	importin 13	protein-coding	1.55816527343528	1.61445967759062	2.00921900823176	1.85628437766582	1.31987348170952	1.76722339943586	1.23795360576284	1.00369464234718	-1.42441208534308	0.218218822809993	0.709152068275812
Merged-chr2-84476783-3	chr2	84476701	84476901	+	899.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177320)	promoter-TSS (NM_001177320)	-26.0	NM_001177320	21788.0	Mm.124316	NM_011576	ENSMUSG00000027082	Tfpi	A630013F22Rik|AW552122|EPI|LACI	tissue factor pathway inhibitor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-73646926-2	chr15	73646826	73647026	+	585.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME3A|LINE|L1	-22182.0	NM_001033219	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122445442-2	chr8	122445342	122445542	+	879.1666869999999	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045696, exon 1 of 1)	non-coding (NR_045696, exon 1 of 1)	1786.0	NR_045696	100689703.0	Mm.271989	NR_045696		9330133O14Rik	-	RIKEN cDNA 9330133O14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-44599687-6	chr10	44599551	44599751	+	972.4722289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-140903.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-59732240-2	chr9	59732140	59732340	+	941.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F2|SINE|Alu	18409.0	NM_001172069	71599.0	Mm.279070	NM_027838	ENSMUSG00000051705	Senp8	9130010J17Rik|AU020827|Den1|Nedp1|Prsc2	SUMO/sentrin specific peptidase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-108636203-3	chr12	108636114	108636314	+	901.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163396, intron 1 of 14)	intron (NM_001163396, intron 1 of 14)	461.0	NM_001163396	14026.0	Mm.238841	NM_007965	ENSMUSG00000021262	Evl	AI528774|b2b2600Clo	Ena-vasodilator stimulated phosphoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-97736444-2	chr3	97736344	97736544	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039376, intron 24 of 46)	intron (NM_001039376, intron 24 of 46)	31570.0	NM_178080	83679.0	Mm.129840	NM_031401	ENSMUSG00000038170	Pde4dip	4732458A06Rik|9430063L05Rik|C87016|D130016K21Rik|D3Bwg1078e|Usmg4|mKIAA0454	phosphodiesterase 4D interacting protein (myomegalin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-130546946-4	chr7	130546857	130547057	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162855, intron 1 of 10)	CpG	424.0	NM_001162855	67872.0	Mm.21714	NM_001162855	ENSMUSG00000040331	Nsmce4a	2410003A14Rik	NSE4 homolog A, SMC5-SMC6 complex component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-118011914-4	chr2	118011826	118012026	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_126479, intron 8 of 9)	intron (NR_126479, intron 8 of 9)	99276.0	NR_126479	329496.0	Mm.235844	NR_126479	ENSMUSG00000087203	Gm13986	C230060E24	predicted gene 13986	ncRNA	2.15114708747755	1.32292159465971	1.54576746183168	2.02491385078706	1.93590784143062	2.55430370673821	2.81897758805785	2.73099227280343	1.77064371320217	0.0571657032007341	0.353543354124953
Merged-chr11-70672075-2	chr11	70671975	70672175	+	828.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_178116, exon 17 of 23)	exon (NM_178116, exon 17 of 23)	-2659.0	NM_001167669	216873.0	Mm.432524	NM_172561	ENSMUSG00000018287	Spag7	5730443G10|ACRP|FSA-1|Fsa1l	sperm associated antigen 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-84626547-4	chr2	84626449	84626649	+	884.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007615, intron 1 of 19)	intron (NM_007615, intron 1 of 19)	22931.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-9758489-1	chr18	9758389	9758589	+	708.0	f0_balb.idr	intron (NM_130449, intron 2 of 9)	intron (NM_130449, intron 2 of 9)	50841.0	NM_130449	140792.0	Mm.218571	NM_130449	ENSMUSG00000036103	Colec12	CL-P1|SRCL|Scara4	collectin sub-family member 12	protein-coding	0.719398817904597	0.99381370966931	0.749313766588633	0.738220924094748	1.58736256460139	1.6161595006437	1.43378351978064	1.59414400872602	4.19995909578206	0.00545164071002791	0.0713031815831194
Merged-chr2-4389506-4	chr2	4389416	4389616	+	868.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172475, intron 1 of 22)	intron (NM_172475, intron 1 of 22)	-11460.0	NM_001177843	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-9629365-3	chr4	9629250	9629450	+	649.450012	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001177856, exon 5 of 5)	3' UTR (NM_001177856, exon 5 of 5)	14367.0	NM_001177853	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105344287-2	chr8	105344187	105344387	+	646.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177699, intron 1 of 21)	intron (NM_177699, intron 1 of 21)	3683.0	NM_177699	234686.0	Mm.87724	NM_177699	ENSMUSG00000014778	Fhod1	BC017144|FHOS|FHOS1	formin homology 2 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-62724676-4	chr1	62724574	62724774	+	966.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077404, intron 2 of 16)	intron (NM_001077404, intron 2 of 16)	21357.0	NM_001077407	18187.0	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-94210291-4	chr11	94210190	94210390	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1164.0	NM_009427	22057.0	Mm.259673	NM_009427	ENSMUSG00000037573	Tob1	Tob|Trob	transducer of ErbB-2.1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-57699115-2	chr15	57699015	57699215	+	596.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_199449, intron 1 of 3)	intron (NM_199449, intron 1 of 3)	4448.0	NM_199449	387609.0	Mm.36557	NM_199449	ENSMUSG00000071757	Zhx2	Afr-1|Afr1|Raf|mKIAA0854	zinc fingers and homeoboxes 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-85182925-2	chr10	85182825	85183025	+	911.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_007771, intron 1 of 12)	L1MB7|LINE|L1	2129.0	NM_007771	12952.0	Mm.26237	NM_007771	ENSMUSG00000020038	Cry1	AU020726|AU021000|Phll1	cryptochrome 1 (photolyase-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-95890337-4	chr13	95890243	95890443	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027711, intron 1 of 35)	intron (NM_027711, intron 1 of 35)	1579.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	4.66301291771304	4.76622439647601	4.86304953223589	4.8138226868328	3.91858512226699	3.4275049525671	3.72299655474563	4.22932196907151	-1.18387648078434	0.00296571973830481	0.045041721057759
Merged-chr6-34876816-3	chr6	34876758	34876958	+	944.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001135611, intron 1 of 3)	intron (NM_001135611, intron 1 of 3)	1207.0	NM_199145	78412.0	Mm.248440	NM_199145	ENSMUSG00000046806	3110062M04Rik	AL023049|Cyren|Mri	RIKEN cDNA 3110062M04 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150089358-2	chr4	150089258	150089458	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177366, intron 1 of 3)	intron (NM_177366, intron 1 of 3)	1855.0	NM_177366	269604.0	Mm.219307	NM_177366	ENSMUSG00000047875	Gpr157	F730108M23Rik	G protein-coupled receptor 157	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24470274-4	chr17	24470181	24470381	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025954)	promoter-TSS (NM_025954)	-192.0	NM_025954	67078.0	Mm.28541	NM_025954	ENSMUSG00000043445	Pgp	1700012G19Rik|AI481330|AUM|G3PP	phosphoglycolate phosphatase	protein-coding	5.6514469784586	5.26873008824577	5.75390118833191	5.01627281170768	6.22680883944554	5.47980432354947	5.14580747443591	5.24152520429982	0.168443208453392	0.599735011648211	0.972644048358371
Merged-chr5-3772114-3	chr5	3772019	3772219	+	851.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003909, intron 2 of 19)	intron (NM_001003909, intron 2 of 19)	668.0	NM_001289529	70797.0	Mm.130148	NM_001003909	ENSMUSG00000040351	Ankib1	2310061P20Rik|4631416I11Rik|AW494740|C80642|mKIAA1386	ankyrin repeat and IBR domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-83981369-4	chr18	83981273	83981473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	105189.0	NM_001081300	110796.0	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-35040780-2	chr9	35040680	35040880	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-75948.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-90308141-2	chr16	90308041	90308241	+	579.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23638.0	NM_178923	224432.0	Mm.439811	NM_178923	ENSMUSG00000022983	Scaf4	AA517739|Sfrs15|Sra4|Srsf15	SR-related CTD-associated factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-45265002-4	chr13	45264901	45265101	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-124741.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-59344314-4	chr3	59344221	59344421	+	804.857178	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162884)	promoter-TSS (NM_001162884)	-65.0	NM_001162884	242050.0	Mm.228086	NM_001162884	ENSMUSG00000036334	Igsf10	6530405F15Rik|9030224D03|AA409708|AA536958|AI414626|Adlican2|CMF608	immunoglobulin superfamily, member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-52328220-4	chr12	52328139	52328339	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	152370.0	NR_136881	102638611.0	Mm.363799	NR_136881	ENSMUSG00000111982	Gm35135	-	predicted gene, 35135	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191125981-4	chr1	191125881	191126081	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	27567.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	6.00836078592602	5.84338916282056	6.12722921249077	5.61922383881206	6.17434826318829	5.361948365341	4.7257297334396	5.43805057928104	-0.424130407355935	0.167807637405336	0.633938930825383
Merged-chr15-100679242-3	chr15	100679159	100679359	+	895.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033612, intron 6 of 7)	intron (NM_033612, intron 6 of 7)	8661.0	NM_033612	109901.0	Mm.2131	NM_033612	ENSMUSG00000023031	Cela1	1810009A17Rik|1810062B19Rik|Ela-1|Ela1|PC-TsF	chymotrypsin-like elastase family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115427995-3	chr11	115427873	115428073	+	845.0277710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183285, intron 4 of 5)	intron (NM_183285, intron 4 of 5)	7847.0	NM_183285	70382.0	Mm.276299	NM_183285	ENSMUSG00000016940	Kctd2	2310012I15Rik	potassium channel tetramerisation domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-139193765-5	chr4	139193555	139193755	+	994.56665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271405)	promoter-TSS (NM_001271405)	-456.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-32478919-4	chr9	32478861	32479061	+	999.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008026, intron 1 of 8)	intron (NM_008026, intron 1 of 8)	62491.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-112197060-4	chr2	112196964	112197164	+	964.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER20|DNA|hAT-Charlie	41166.0	NM_001011802	258022.0	Mm.377330	NM_001011802	ENSMUSG00000049758	Olfr1318	MOR245-16	olfactory receptor 1318	protein-coding	1.9811210153077	1.23371037494493	2.16187180680802	1.81084913268539	1.99887878489247	1.24112626697754	2.77588420389205	3.06432017624598	1.41173381339837	0.168173192540879	0.634244121156369
Merged-chr4-3779534-2	chr4	3779434	3779634	+	846.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 10 of 12)	intron (NM_001111096, intron 10 of 12)	56121.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-119833156-2	chr8	119833056	119833256	+	731.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028071, intron 2 of 3)	intron (NM_028071, intron 2 of 3)	7423.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-53775263-3	chr1	53775139	53775339	+	888.033325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133810, intron 2 of 7)	intron (NM_133810, intron 2 of 7)	9976.0	NM_133810	98267.0	Mm.25559	NM_133810	ENSMUSG00000026094	Stk17b	3110009A03Rik|AI120141|Drak2	serine/threonine kinase 17b (apoptosis-inducing)	protein-coding	1.93816252563208	3.10219336148075	1.43665975228901	2.56134800627267	2.34411863678116	2.50430555263605	2.94128254208127	2.85102589307789	0.534411754187489	0.531622594897368	0.951191400754218
Merged-chr3-30512108-2	chr3	30512008	30512208	+	643.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2433.0	NM_021442	14013.0	Mm.56965	NM_007963	ENSMUSG00000027684	Mecom	D630039M04Rik|Evi-1|Evi1|Jbo|Mds|Mds1|Mds1-Evi1|Prdm3|Znfpr1b1	MDS1 and EVI1 complex locus	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98948102-4	chr11	98947980	98948180	+	958.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177302, intron 2 of 9)	L1MB8|LINE|L1	8369.0	NM_001177303	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-81454563-4	chr7	81454486	81454686	+	827.645813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252526, intron 1 of 11)	CpG	172.0	NM_001252525	12877.0	Mm.273122	NM_007755	ENSMUSG00000025586	Cpeb1	AU024112|Cpe-bp1|Cpeb|mCPEB|mCpeb-1	cytoplasmic polyadenylation element binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-76901143-2	chr8	76901043	76901243	+	552.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028579)	promoter-TSS (NR_028579)	-522.0	NR_028579	102640923.0	Mm.367571	NR_028579	ENSMUSG00000074235	Gm10649	-	predicted gene 10649	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-15826640-4	chr17	15826552	15826752	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178615)	promoter-TSS (NM_178615)	-66.0	NM_178615	68799.0	Mm.293466	NM_178615	ENSMUSG00000048027	Rgmb	1110059F19Rik|DRAGON	repulsive guidance molecule family member B	protein-coding	4.25017259371778	4.41103628025623	4.0186686179191	4.54720502773033	4.28293829560438	4.44130227889588	4.04945008216971	4.52545366953797	0.0205145050750742	0.958719810326157	0.998431161219273
Merged-chr3-40524814-2	chr3	40524714	40524914	+	709.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1902.0	NR_040445	100040882.0	Mm.272869	NR_040445	ENSMUSG00000037884	1700017G19Rik	-	RIKEN cDNA 1700017G19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-55960952-2	chr17	55960852	55961052	+	893.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028381, intron 2 of 7)	intron (NM_028381, intron 2 of 7)	-1551.0	NR_108021	100504333.0	Mm.391908	NR_108021	ENSMUSG00000097077	Gm16712	-	predicted gene, 16712	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-3234512-2	chr16	3234402	3234602	+	617.875	f0_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-357896.0	NM_146860	258859.0	Mm.377723	NM_146860	ENSMUSG00000051003	Olfr161	MOR131-1|OR912-47M6	olfactory receptor 161	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-84989168-2	chr15	84989055	84989255	+	547.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1184.0	NM_001033273	223739.0	Mm.323925	NM_001033273	ENSMUSG00000036046	5031439G07Rik	AW554572|mKIAA0930	RIKEN cDNA 5031439G07 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-22436306-4	chr16	22436196	22436396	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358428, intron 2 of 12)	intron (NM_001358428, intron 2 of 12)	2072.0	NM_001358428	104156.0	Mm.155708	NM_023794	ENSMUSG00000013089	Etv5	1110005E01Rik|8430401F14Rik|ERM	ets variant 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-24944513-1	chr2	24944413	24944613	+	586.0	f1_balb.idr	Intergenic	B3|SINE|B2	-5264.0	NM_026021	67187.0	Mm.296106	NM_026021	ENSMUSG00000026974	Zmynd19	2700064H14Rik|AA536891|AU014915|mizip	zinc finger, MYND domain containing 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125254296-4	chr6	125254207	125254407	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	-11218.0	NR_015527	73870.0	Mm.440681	NR_015527	ENSMUSG00000108129	4930417O13Rik	-	RIKEN cDNA 4930417O13 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-67015463-2	chr13	67015371	67015571	+	825.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045851, intron 1 of 8)	L1Md_T|LINE|L1	16934.0	NR_045851	71226.0	Mm.399574	NR_045851	ENSMUSG00000114362	4933433G19Rik	-	RIKEN cDNA 4933433G19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-98977503-4	chr15	98977416	98977616	+	931.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8449.0	NR_045991	75951.0	Mm.441657	NR_045991	ENSMUSG00000097587	4930578M01Rik	3010001K12Rik	RIKEN cDNA 4930578M01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-86678660-2	chr12	86678560	86678760	+	964.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177354)	promoter-TSS (NM_177354)	-40.0	NM_177354	238328.0	Mm.216101	NM_177354	ENSMUSG00000021256	Vash1	AI834978|D930046M13Rik|G630009D10Rik	vasohibin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-99179675-2	chr14	99179575	99179775	+	714.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_029320, intron 11 of 17)	PB1D10|SINE|Alu	-79905.0	NR_153390	72662.0	Mm.163339	NM_028315	ENSMUSG00000033166	Dis3	2810028N01Rik	DIS3 homolog, exosome endoribonuclease and 3'-5' exoribonuclease	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-138537551-2	chr3	138537451	138537651	+	741.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001313980, intron 2 of 7)	intron (NM_001313980, intron 2 of 7)	10283.0	NM_001313980	13684.0	Mm.3941	NM_007917	ENSMUSG00000028156	Eif4e	EG668879|Eif4e-ps|If4e|eIF-4E	eukaryotic translation initiation factor 4E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-116196597-2	chr6	116196497	116196697	+	604.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR21|LTR|ERVK	-3223.0	NM_177412	330401.0	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-104794132-4	chr3	104794041	104794241	+	999.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008619)	TTS (NM_008619)	5107.0	NM_001291859	11853.0	Mm.262	NM_007484	ENSMUSG00000002233	Rhoc	AI324259|Arh9|Arhc	ras homolog family member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-111488845-4	chr13	111488695	111488895	+	998.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028487, intron 1 of 12)	CpG	1332.0	NM_028487	73274.0	Mm.57286	NM_028487	ENSMUSG00000032745	Gpbp1	1700034P14Rik|AU019836|D230035M11Rik|Gpbp|mGPBP	GC-rich promoter binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-127617462-4	chr5	127617359	127617559	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133895)	promoter-TSS (NM_133895)	-67.0	NM_133895	100561.0	Mm.28506	NM_133895	ENSMUSG00000029416	Slc15a4	AA987064|AW742963|C130069N12Rik|PHT1|PTR4	solute carrier family 15, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-102013048-2	chr7	102012948	102013148	+	886.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_133947, intron 21 of 24)	intron (NM_133947, intron 21 of 24)	5107.0	NM_010531	16068.0	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-102286785-2	chr11	102286685	102286885	+	628.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028076, intron 2 of 3)	intron (NM_028076, intron 2 of 3)	1846.0	NM_001302505	72053.0	Mm.101274	NM_028076	ENSMUSG00000034757	Tmub2	2010008E23Rik	transmembrane and ubiquitin-like domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-63081179-2	chr14	63081079	63081279	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26106.0	NR_046019	72609.0	Mm.387101	NR_046019		2700070H01Rik	-	RIKEN cDNA 2700070H01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-69655569-1	chr13	69655469	69655669	+	552.0	f0_balb.idr	Intergenic	Lx6|LINE|L1	43553.0	NM_145354	28114.0	Mm.260009	NM_145354	ENSMUSG00000021595	Nsun2	D13Wsu123e|Misu	NOL1/NOP2/Sun domain family member 2	protein-coding	3.27641503519688	1.70453698854698	1.65052096810545	2.86588169057029	2.66508874741574	2.45392176961684	2.49519404336437	1.82568412696798	-0.393893072604998	0.659104460720591	0.989316345253417
Merged-chr4-128664170-4	chr4	128664042	128664242	+	870.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195130, intron 1 of 14)	intron (NM_001195130, intron 1 of 14)	9440.0	NM_001195130	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127109333-2	chr7	127109233	127109433	+	919.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133686, intron 1 of 3)	intron (NM_133686, intron 1 of 3)	12696.0	NM_133686	67375.0	Mm.26928	NM_133686	ENSMUSG00000030674	Qprt	2410027J01Rik|AI647766|QPRTase	quinolinate phosphoribosyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-55488196-3	chr13	55488065	55488265	+	718.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019813)	promoter-TSS (NM_019813)	-89.0	NM_001177372	56320.0	Mm.19016	NM_019813	ENSMUSG00000034675	Dbn1	-	drebrin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-21096756-2	chr3	21096656	21096856	+	659.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3A|LINE|L1	-729579.0	NM_175086	11608.0	Mm.134863	NM_175086	ENSMUSG00000054988	Agtr1b	AT1B|AT2R1B|Agtr-1b|Angtr-1b	angiotensin II receptor, type 1b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118082941-4	chr9	118082863	118083063	+	762.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026442, intron 2 of 3)	intron (NM_026442, intron 2 of 3)	42441.0	NM_013727	27215.0	Mm.92705	NM_013727	ENSMUSG00000039285	Azi2	AA410145|AZ2	5-azacytidine induced gene 2	protein-coding	0.8092932696947	2.32261074754759	0.628648288468837	0.611671018594083	0.586649254758851	0.65451005375258	1.71480183006444	1.84578773491699	-0.0769767223110559	0.975531324841755	0.998431161219273
Merged-chr4-6445283-4	chr4	6445188	6445388	+	899.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010945, intron 1 of 30)	intron (NM_010945, intron 1 of 30)	8983.0	NM_010945	18201.0	Mm.3059	NM_010945	ENSMUSG00000028245	Nsmaf	AA959567|C630007J05|Fan	neutral sphingomyelinase (N-SMase) activation associated factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-121594097-4	chr5	121593999	121594199	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001308450)	promoter-TSS (NM_001308450)	-275.0	NM_001308450	11669.0	Mm.284446	NM_009656	ENSMUSG00000029455	Aldh2	AHD-M1|ALDH-E2|ALDHI|Ahd-5|Ahd5	aldehyde dehydrogenase 2, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24015818-5	chr17	24015613	24015813	+	789.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17613.0	NM_133731	70835.0	Mm.157351	NM_133731	ENSMUSG00000045027	Prss22	4733401N09Rik|BSSP-4|SP001LA	protease, serine 22	protein-coding	2.8590321981151	2.18182210488011	2.10562206168113	2.8893466321347	2.62771364240551	1.33468025226667	2.12273805705743	1.26835704584891	-1.28364981465597	0.192337589675266	0.670655636962211
Merged-chr9-66593147-4	chr9	66593068	66593268	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302116)	promoter-TSS (NM_001302116)	-53.0	NM_001302116	235441.0	Mm.32465	NM_144937	ENSMUSG00000032376	Usp3	AA409661|BC017156	ubiquitin specific peptidase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-11995300-7	chr15	11995208	11995408	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011294, intron 1 of 4)	CpG	699.0	NM_011294	20024.0	Mm.41746	NM_011294	ENSMUSG00000022205	Sub1	AI842364|P15|P9|Pc4|Rpo2tc1	SUB1 homolog (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26529375-3	chr17	26529299	26529499	+	694.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-20927.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	1.70718642276819	1.69798147910518	2.65931576690288	1.29942554705975	3.60150977231075	3.34350376891806	3.3015640422778	2.19179495890873	2.47162893975082	0.00388992074127411	0.0549504737682183
Merged-chr5-36575470-3	chr5	36575390	36575590	+	996.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113362, intron 2 of 14)	intron (NM_001113362, intron 2 of 14)	6907.0	NM_133910	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	1.56409379198911	0.706243630722262	2.12140936617011	1.07186223872079	1.0193289151939	0.709771632891997	0.693885983228319	1.23107004677792	-2.09663913059537	0.14764352833679	0.597789138528913
Merged-chr9-100454372-4	chr9	100454268	100454468	+	998.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32105.0	NM_001033543	213208.0	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	5.13812753609112	5.14293100253896	4.72988537753044	5.10878175342292	5.59993243753839	4.46724883739816	5.66475003468279	5.09899000463215	0.296263483614724	0.37928065746482	0.871744368943447
Merged-chr15-76453462-1	chr15	76453362	76453562	+	543.0	f1_c57bl6.idr	TTS (NM_175457)	TTS (NM_175457)	-3976.0	NM_198885	20289.0	Mm.322821	NM_198885	ENSMUSG00000034161	Scx	BB114693|Bhlha41|Scl	scleraxis	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30172979-2	chr2	30172879	30173079	+	585.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_172660)	TTS (NM_172660)	1455.0	NM_007931	13804.0	Mm.474473	NM_007931	ENSMUSG00000015337	Endog	-	endonuclease G	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-42387882-3	chr17	42387773	42387973	+	807.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355270, intron 2 of 2)	URR1A|DNA|hAT-Charlie	71273.0	NM_001355270	627626.0	Mm.390999	NM_028474	ENSMUSG00000042256	Ptchd4	3110082D06Rik|Gm321	patched domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-26476575-2	chr6	26476475	26476675	+	665.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3A|LINE|L1	545149.0	NR_040771	626904.0	Mm.126787	NR_040771	ENSMUSG00000106799	Gm20756	-	predicted gene, 20756	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-111808936-2	chr13	111808836	111809036	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011945)	promoter-TSS (NM_011945)	57.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81564051-2	chr10	81563951	81564151	+	586.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001276288, intron 2 of 6)	intron (NM_001276288, intron 2 of 6)	4607.0	NM_001276288	14797.0	Mm.180013	NM_010347	ENSMUSG00000054452	Aes	AL024115|Esp1|Grg|Grg-5|Grg5|Tle5	amino-terminal enhancer of split	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70773576-2	chr8	70773476	70773676	+	715.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008841, intron 2 of 15)	intron (NM_008841, intron 2 of 15)	3136.0	NM_008841	18709.0	Mm.12945	NM_008841	ENSMUSG00000031834	Pik3r2	p85beta	phosphoinositide-3-kinase regulatory subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70711923-2	chr8	70711810	70712010	+	837.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6633.0	NM_001195253	100502950.0	Mm.52981	NM_001195253	ENSMUSG00000095026	Gm3336	100041434|2410018E23Rik	predicted gene 3336	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-40949495-2	chr4	40949395	40949595	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_029814, exon 2 of 8)	exon (NM_029814, exon 2 of 8)	942.0	NM_029814	76959.0	Mm.212763	NM_029814	ENSMUSG00000028419	Chmp5	2210412K09Rik|AW545668	charged multivesicular body protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-110417415-4	chr12	110417268	110417468	+	952.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-29811.0	NM_001135001	26931.0	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-101782934-1	chr2	101782834	101783034	+	583.0	f1_balb.idr	intron (NM_001355625, intron 1 of 8)	intron (NM_001355625, intron 1 of 8)	14773.0	NM_175181	72446.0	Mm.24138	NM_175181	ENSMUSG00000032841	Prr5l	2600010E01Rik|4833411O04Rik|Protor-2|Protor2	proline rich 5 like	protein-coding	0.898611467882568	1.16401335332259	0.526576601013006	0.519986409513438	1.00952247460066	0.907334681872269	0.528455514965992	1.07716543926199	0.450102875376655	0.783466250736354	1
Merged-chr5-135465358-2	chr5	135465258	135465458	+	741.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146001, intron 1 of 30)	intron (NM_146001, intron 1 of 30)	-70812.0	NM_148932	107939.0	Mm.28399	NM_148932	ENSMUSG00000053293	Pom121	2610027A18Rik|C80273|mKIAA0618	nuclear pore membrane protein 121	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41274665-3	chr19	41274486	41274686	+	870.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 16 of 16)	ORR1A4|LTR|ERVL-MaLR	-10582.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	2.81543754484219	2.2301793155947	3.3200743662037	2.8862111153494	2.6815361262146	1.82842563386066	2.59609309410234	2.10695122749991	-1.04226083173732	0.181548383058564	0.655037339596025
Merged-chr13-60710154-3	chr13	60710053	60710253	+	995.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 3 of 26)	RSINE1|SINE|B4	76211.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-102242476-2	chr7	102242336	102242536	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019566, intron 1 of 1)	MIRb|SINE|MIR	7682.0	NM_019566	56212.0	Mm.259795	NM_019566	ENSMUSG00000073982	Rhog	2810426G09Rik|Arhg|Sid10750	ras homolog family member G	protein-coding	1.81628928793216	1.07034026529689	2.49363204510126	1.47355873693151	1.21546877744997	2.83731552487249	1.86995425810125	1.2752186738749	0.394929230915835	0.726491656960303	0.998431161219273
Merged-chr2-162932814-2	chr2	162932714	162932914	+	978.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026499, intron 2 of 5)	intron (NM_026499, intron 2 of 5)	1306.0	NM_026499	67996.0	Mm.24042	NM_026499	ENSMUSG00000016921	Srsf6	1210001E11Rik|AI314910|AW146126|Sfrs6	serine/arginine-rich splicing factor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166757396-2	chr2	166757296	166757496	+	589.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36371.0	NM_023815	76367.0	Mm.330796	NM_023815	ENSMUSG00000042854	Trp53rkb	2810408M09Rik|4933401B08Rik|5630401H01Rik|Nori-2|PRPK|Tp53rk|Trp53rk|Trp53tk|mNori-2p	transformation related protein 53 regulating kinase B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-87676425-3	chr16	87676350	87676550	+	818.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-22504.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98400351-4	chr11	98400275	98400475	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001033537, exon 1 of 8)	exon (NM_001033537, exon 1 of 8)	115.0	NM_001033537	320655.0	Mm.86519	NM_001033537	ENSMUSG00000038208	Pgap3	CAB2|D430035D22Rik|Perld1	post-GPI attachment to proteins 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-135793112-4	chr7	135793056	135793256	+	818.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-76777.0	NM_001081117	17345.0	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-24481942-4	chr7	24481846	24482046	+	984.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153112)	promoter-TSS (NM_153112)	-77.0	NM_153112	260299.0	Mm.178322	NM_153112	ENSMUSG00000054793	Cadm4	Igdf4c|Igsf4c|Tsll2	cell adhesion molecule 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101210291-2	chr15	101210191	101210391	+	991.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_007395, intron 8 of 8)	intron (NM_007395, intron 8 of 8)	-10956.0	NR_045996	105968.0	Mm.120798	NR_045996	ENSMUSG00000115944	AU021063	-	expressed sequence AU021063	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-69280565-3	chr18	69280465	69280665	+	837.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63927.0	NM_013685	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27037828-2	chr17	27037746	27037946	+	855.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8587.0	NM_027544	70772.0	Mm.440437	NM_027544	ENSMUSG00000048731	Ggnbp1	0610031G08Rik|mdf	gametogenetin binding protein 1	protein-coding	1.57688487698903	1.52353436707515	1.8420501311342	2.26155193463937	0.839104357819906	0.900298561499793	1.47912489525378	0.864124982943614	-3.01478483239252	0.026713079723439	0.219177817505844
Merged-chr9-58537978-4	chr9	58537870	58538070	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133983, intron 1 of 6)	(A)n|Simple_repeat|Simple_repeat	2970.0	NM_133983	102657.0	Mm.5356	NM_133983	ENSMUSG00000035914	Cd276	6030411F23Rik|AU016588|B7RP-2|B7h3	CD276 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-3956240-2	chr8	3956140	3956340	+	547.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9377.0	NM_130903	170776.0	Mm.215729	NM_130903	ENSMUSG00000040165	Cd209c	SIGNR2|mSIGNR2	CD209c antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-60895530-4	chr13	60895413	60895613	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001145801, exon 4 of 4)	3' UTR (NM_001145801, exon 4 of 4)	1934.0	NM_007797	13025.0	Mm.30144	NM_007797	ENSMUSG00000074874	Ctla2b	AW545568|Ctla-2b	cytotoxic T lymphocyte-associated protein 2 beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165947774-4	chr2	165947694	165947894	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44843.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	4.68381047768915	4.58178800631108	3.74710906771217	3.86538945657971	3.76348746427646	4.50965471635578	3.39072292779994	4.60786909079177	-0.168871761741079	0.722939194990918	0.998431161219273
Merged-chr2-90439843-2	chr2	90439743	90439943	+	765.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 23 of 23)	intron (NM_008982, intron 23 of 23)	39203.0	NM_146263	258330.0	Mm.330392	NM_146263	ENSMUSG00000082980	Olfr1274-ps	GA_x5J8B7W2BV0-3116-4045|MOR228-4|MOR228-5|Olfr1274	olfactory receptor 1274, pseudogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135005677-2	chr5	135005577	135005777	+	718.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-3475.0	NM_001190437	68758.0	Mm.389700	NM_145215	ENSMUSG00000040532	Abhd11	1110054D16Rik|A630008N09Rik|Wbscr21	abhydrolase domain containing 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-10030034-4	chr18	10029943	10030143	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360884)	promoter-TSS (NM_001360884)	106.0	NM_001038589	59025.0	Mm.329277	NM_021522	ENSMUSG00000047879	Usp14	2610005K12Rik|2610037B11Rik|AW107924|C78769|ax|nmf375	ubiquitin specific peptidase 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-105553735-2	chr9	105553635	105553835	+	633.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32478.0	NM_001253831	235574.0	Mm.326247	NM_175025	ENSMUSG00000032570	Atp2c1	1700121J11Rik|ATP2C1A|AW061228|BCPM|D930003G21Rik|HHD|SPCA|pmr1	ATPase, Ca++-sequestering	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-67456874-2	chr18	67456774	67456974	+	665.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-7738.0	NM_027130	69597.0	Mm.426052	NM_027130	ENSMUSG00000024527	Afg3l2	2310036I02Rik|AW260507|Emv66|par	AFG3-like AAA ATPase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-106561275-4	chr8	106561171	106561371	+	837.233337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25872.0	NR_045470	68692.0	Mm.416843	NR_045470	ENSMUSG00000099139	1110028F18Rik	-	RIKEN cDNA 1110028F18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-56105368-3	chr9	56105298	56105498	+	794.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011193, intron 1 of 14)	intron (NM_011193, intron 1 of 14)	15422.0	NM_011193	19200.0	Mm.2534	NM_011193	ENSMUSG00000032322	Pstpip1	CD2BP1|def-2	proline-serine-threonine phosphatase-interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-165763030-4	chr1	165762932	165763132	+	891.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011804)	promoter-TSS (NM_011804)	-726.0	NR_149310	433375.0	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56360763-2	chr17	56360663	56360863	+	703.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172132, intron 5 of 22)	intron (NM_172132, intron 5 of 22)	34713.0	NM_001357909	193796.0	Mm.45047	NM_172132	ENSMUSG00000024201	Kdm4b	4732474L06Rik|Jmjd2b	lysine (K)-specific demethylase 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-17407779-2	chr16	17407679	17407879	+	738.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023348, intron 1 of 4)	ID_B1|SINE|B4	-1465.0	NM_001001983	224020.0	Mm.5718	NM_001001983	ENSMUSG00000041720	Pi4ka	Pik4ca	phosphatidylinositol 4-kinase alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-6722112-4	chr2	6722011	6722211	+	876.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310447)	promoter-TSS (NM_001310447)	-449.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123906655-4	chr5	123906573	123906773	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026603)	promoter-TSS (NM_026603)	-602.0	NM_026603	68184.0	Mm.28549	NM_026603	ENSMUSG00000023106	Denr	1500003K04Rik	density-regulated protein	protein-coding	4.07110426686814	4.86948793425453	4.63893299202664	3.98590438130754	4.38328463499667	4.76936986729136	4.13087030312751	4.19131369454838	-0.0582780935753752	0.887359030405334	0.998431161219273
Merged-chr7-110840533-4	chr7	110840417	110840617	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025999, intron 1 of 5)	L3|LINE|CR1	3864.0	NM_025999	67150.0	Mm.96867	NM_025999	ENSMUSG00000030788	Rnf141	2610110L04Rik|AA792898|AU022812|ZFP36|ZNF230	ring finger protein 141	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-3102079-2	chr11	3101997	3102197	+	894.5	f0_balb.idr|f1_balb.idr	Intergenic	GSAT_MM|Satellite|Satellite	-21924.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-33655467-4	chr8	33655390	33655590	+	939.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010344, intron 1 of 12)	intron (NM_010344, intron 1 of 12)	2252.0	NM_010344	14782.0	Mm.283573	NM_010344	ENSMUSG00000031584	Gsr	AI325518|D8Ertd238e|Gr-1|Gr1	glutathione reductase	protein-coding	3.29161569663259	2.62330618435942	2.88354425169967	3.4610085395655	1.42984059443483	2.49232742426786	2.68280611270256	2.99920332364273	-1.08823598963371	0.159400791225516	0.618662074549408
Merged-chr8-70002725-2	chr8	70002625	70002825	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-6341.0	NM_145596	234366.0	Mm.270044	NM_145596	ENSMUSG00000036180	Gatad2a	1110066C11Rik|BC031407|C80248	GATA zinc finger domain containing 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-160062684-4	chr2	160062599	160062799	+	854.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46046.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	-1.05250607526984	-0.402739045299741	-1.04366794023272	-1.04875758567453	-0.897607459308638	-1.02893395323655	-1.040926557591	-1.04836336437307	-1.93683734114878	0.536907385174869	1
Merged-chr3-31390153-4	chr3	31390065	31390265	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-79846.0	NM_172861	241919.0	Mm.285366	NM_172861	ENSMUSG00000069072	Slc7a14	A930013N06|BC061928	solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-125962898-4	chr4	125962789	125962989	+	763.741699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40579.0	NR_015560	72395.0	Mm.112888	NR_015560	ENSMUSG00000085562	2610028E06Rik	BB043107	RIKEN cDNA 2610028E06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-100590704-4	chr5	100590629	100590829	+	778.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18524.0	NM_139198	231507.0	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-134397397-1	chr4	134397297	134397497	+	632.666687	f1_balb.idr	promoter-TSS (NM_001285872)	promoter-TSS (NM_001285872)	-74.0	NM_001285872	100163.0	Mm.22116	NM_133880	ENSMUSG00000037366	Pafah2	2310074E22Rik|AI507170	platelet-activating factor acetylhydrolase 2	protein-coding	1.15384204252071	0.863803974384534	1.40623126312599	1.04270863666149	1.5267217732445	1.8546854056911	1.96903074068267	0.836580906845052	1.79403879943983	0.170592824368058	0.637908273569781
Merged-chr2-4889705-3	chr2	4889611	4889811	+	886.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175400, intron 3 of 8)	intron (NM_175400, intron 3 of 8)	8147.0	NM_175400	109079.0	Mm.34329	NM_175400	ENSMUSG00000026662	Sephs1	1110046B24Rik|AA589574|AI505014|AW111620|SELD|SPS|SPS1	selenophosphate synthetase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-6636699-3	chr13	6636583	6636783	+	878.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019703, intron 1 of 21)	intron (NM_019703, intron 1 of 21)	12088.0	NM_019703	56421.0	Mm.273874	NM_019703	ENSMUSG00000021196	Pfkp	1200015H23Rik|9330125N24Rik|ATP-PFK|PFK-C|PFK-P	phosphofructokinase, platelet	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-118142546-2	chr10	118142446	118142646	+	585.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162904, intron 1 of 14)	intron (NM_001162904, intron 1 of 14)	759.0	NM_010785	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-99270144-3	chr4	99270044	99270244	+	863.111145	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	75997.0	NM_001145967	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	3.75303723891149	5.19298501544047	5.6961122146749	5.24269758280993	2.54762173193343	3.27305451656063	5.17323421309758	4.05544573738691	-1.24851756427932	0.133174410870357	0.570764692507331
Merged-chr6-140767489-4	chr6	140767387	140767587	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	140602.0	NM_001309436	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-180041127-2	chr2	180041027	180041227	+	739.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_011969, intron 1 of 6)	B4A|SINE|B4	1337.0	NM_001289476	26444.0	Mm.21728	NM_011969	ENSMUSG00000027566	Psma7	C6-I	proteasome (prosome, macropain) subunit, alpha type 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6235185-2	chr19	6235085	6235285	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198168, intron 1 of 13)	intron (NM_198168, intron 1 of 13)	655.0	NM_198168	225849.0	Mm.118076	NM_198168	ENSMUSG00000024777	Ppp2r5b	B'beta|BC026670	protein phosphatase 2, regulatory subunit B', beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-18936850-2	chr2	18936750	18936950	+	668.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008845, intron 1 of 9)	intron (NM_008845, intron 1 of 9)	61271.0	NM_008845	18718.0	Mm.313977	NM_008845	ENSMUSG00000026737	Pip4k2a	AW742916|Pip5k2a	phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-54898837-4	chr1	54898730	54898930	+	893.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081433, intron 1 of 27)	intron (NM_001081433, intron 1 of 27)	27557.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-14862571-2	chr4	14862471	14862671	+	827.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1648.0	NM_028264	72519.0	Mm.279158	NM_028264	ENSMUSG00000028221	Tmem55a	2610319K07Rik|AI315591|AV001360|Pip4p2	transmembrane protein 55A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53083613-2	chr4	53083513	53083713	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 15 of 49)	MIR3|SINE|MIR	71733.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-53346769-3	chr10	53346687	53346887	+	607.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001141927)	TTS (NM_001141927)	9101.0	NM_001141927	18821.0	Mm.34145	NM_023129	ENSMUSG00000038583	Pln	Plb	phospholamban	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-36642855-4	chr16	36642740	36642940	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019388, intron 1 of 7)	intron (NM_019388, intron 1 of 7)	23237.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-24620196-4	chr16	24620070	24620270	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 5 of 12)	intron (NM_178665, intron 5 of 12)	90856.0	NR_038091	624582.0	Mm.439775	NR_038091		Morf4l1-ps1	A730098P11Rik	mortality factor 4 like 1, pseudogene 1	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-49371653-4	chr13	49371532	49371732	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039179, intron 2 of 6)	intron (NM_001039179, intron 2 of 6)	30083.0	NM_001039180	76895.0	Mm.197387	NM_029791	ENSMUSG00000037933	Bicd2	-	BICD cargo adaptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-26641445-3	chr14	26641377	26641577	+	905.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007479, intron 1 of 5)	intron (NM_007479, intron 1 of 5)	3343.0	NM_007479	11843.0	Mm.297768	NM_007479	ENSMUSG00000021877	Arf4	AA407803	ADP-ribosylation factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26502483-2	chr17	26502383	26502583	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5989.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-111039168-4	chr9	111039084	111039284	+	902.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008522, intron 15 of 16)	intron (NM_008522, intron 15 of 16)	18060.0	NM_001302377	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-26723220-2	chr2	26723120	26723320	+	581.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8500.0	NM_001359164	105244099.0		NM_001359164		Gm39773	LCN16	predicted gene, 39773	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44737410-2	chr9	44737310	44737510	+	715.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2212.0	NM_153537	102693.0	Mm.28639	NM_153537	ENSMUSG00000048537	Phldb1	AU041016|D330037A14Rik|Ll5a	pleckstrin homology like domain, family B, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102354140-2	chr12	102354040	102354240	+	968.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_177620, intron 4 of 9)	intron (NM_177620, intron 4 of 9)	70499.0	NM_001161365	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	1.13581347457291	0.480625596221913	0.819010184371648	0.465115246191167	1.14915911435633	0.482587455354883	1.19255033304992	0.466301273522912	0.570120728208689	0.747722680243236	1
Merged-chr16-56716235-2	chr16	56716135	56716335	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357126, intron 1 of 8)	B1_Mus2|SINE|Alu	1215.0	NM_001357124	21787.0	Mm.425970	NM_019678	ENSMUSG00000022757	Tfg	AI173908	Trk-fused gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-90670278-2	chr15	90670170	90670370	+	694.5	f0_balb.idr|f1_c57bl6.idr	intron (NM_001033851, intron 1 of 3)	B4A|SINE|B4	9118.0	NM_025815	66871.0	Mm.290991	NM_025815	ENSMUSG00000052560	Cpne8	1200003E11Rik|1500031E20Rik	copine VIII	protein-coding	3.7038478792048	3.55542156048939	2.96785420196934	1.90426664188981	3.12286490319299	3.31400779000113	3.74343835216096	3.10423117785082	0.222613715105577	0.736668727225798	0.998431161219273
Merged-chr18-68184203-2	chr18	68184103	68184303	+	691.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_172631, intron 3 of 5)	intron (NM_172631, intron 3 of 5)	-43743.0	NM_001357444	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83356768-4	chr6	83356650	83356850	+	867.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175277, intron 3 of 3)	intron (NM_175277, intron 3 of 3)	7266.0	NM_175277	78653.0	Mm.391470	NM_175277	ENSMUSG00000045160	Bola3	1810056O20Rik	bolA-like 3 (E. coli)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124377376-4	chr5	124377290	124377490	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081203, intron 30 of 31)	intron (NM_001081203, intron 30 of 31)	-22762.0	NM_013812	13445.0	Mm.391838	NM_013812	ENSMUSG00000029394	Cdk2ap1	Apc10|Cdkap1|DORC1|Doc1|ST19|doc-1|p12	CDK2 (cyclin-dependent kinase 2)-associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-103307358-4	chr15	103307255	103307455	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_030720)	TTS (NM_030720)	3083.0	NM_030720	80910.0	Mm.160369	NM_030720	ENSMUSG00000063234	Gpr84	EX33	G protein-coupled receptor 84	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-48549221-2	chr13	48549121	48549321	+	636.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10949.0	NR_029725	387244.0		NR_029725	ENSMUSG00000065421	Mirlet7a-1	Let-7a|Mirnlet7a|Mirnlet7a-1|let-7a-1	microRNA let7a-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116170539-2	chr11	116170398	116170598	+	847.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	-2320.0	NM_172571	217335.0	Mm.35241	NM_172571	ENSMUSG00000020776	Fbf1	1110033G01Rik|5930413D20|mKIAA1863	Fas (TNFRSF6) binding factor 1	protein-coding	2.42783893982951	1.87739751333776	2.56404270625329	1.90427217975794	2.13731659240646	1.89110137859021	1.21685260494594	1.42350192169059	-1.34361646577038	0.18534692096896	0.661055992207366
Merged-chr16-87439033-2	chr16	87438933	87439133	+	872.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_016924, intron 1 of 4)	B1F2|SINE|Alu	1559.0	NM_016924	53858.0	Mm.162406	NM_016924	ENSMUSG00000041079	Rwdd2b	ORF5	RWD domain containing 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-5365944-4	chr6	5365858	5366058	+	752.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17428.0	NM_023048	65255.0	Mm.51340	NM_023048	ENSMUSG00000042607	Asb4	8430401O13Rik|AV117194|AW060255	ankyrin repeat and SOCS box-containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-108381504-2	chr3	108381404	108381604	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_040560, intron 2 of 2)	intron (NR_040560, intron 2 of 2)	2237.0	NR_040560	100038453.0	Mm.214328	NR_040560	ENSMUSG00000074281	Gm12522	-	predicted gene 12522	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-92822542-4	chr8	92822460	92822660	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4737.0	NM_008610	17390.0	Mm.29564	NM_008610	ENSMUSG00000031740	Mmp2	Clg4a|GelA|MMP-2	matrix metallopeptidase 2	protein-coding	-1.1306715186527	-1.10797379294626	-1.11906441266486	-1.12746538082009	-0.983028288140964	-1.10557040938762	-1.11655373946004	-0.585566221273974	2.70127814494298	0.400998399340136	1
Merged-chr2-166035820-4	chr2	166035669	166035869	+	774.708313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008679, intron 2 of 22)	intron (NM_008679, intron 2 of 22)	43132.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	1.07330742148102	0.286045912887124	0.278850364800124	0.588870721380092	0.265367517274875	0.659959764707114	0.280440027318937	0.831808122143782	-0.417993791547151	0.827053949517317	1
Merged-chr10-78156901-4	chr10	78156792	78156992	+	925.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC|LINE|L1	12876.0	NM_138601	28295.0	Mm.268691	NM_138601	ENSMUSG00000053329	D10Jhu81e	C21orf33|ES1	DNA segment, Chr 10, Johns Hopkins University 81 expressed	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-46612360-4	chr18	46612258	46612458	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14654.0	NM_010120	13664.0	Mm.262037	NM_010120	ENSMUSG00000057561	Eif1a	C76390|Ef1a|Eftu|Eif4c|eIF-1A|eIF-4C	eukaryotic translation initiation factor 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-15195176-1	chr3	15195076	15195276	+	546.0	f1_balb.idr	Intergenic	Intergenic	137126.0	NM_001076679	751864.0	Mm.431296	NM_001076679	ENSMUSG00000078783	Gm9733	-	predicted gene 9733	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-33673375-4	chr8	33673244	33673444	+	943.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010344, intron 4 of 12)	intron (NM_010344, intron 4 of 12)	20106.0	NM_010344	14782.0	Mm.283573	NM_010344	ENSMUSG00000031584	Gsr	AI325518|D8Ertd238e|Gr-1|Gr1	glutathione reductase	protein-coding	6.06902023510936	5.14995127776556	5.13643844263193	5.88310289820771	4.29267997446919	3.01357059399398	3.19525082939199	4.64628302575139	-1.9838980011413	3.61750704513362e-06	0.000193762721104969
Merged-chr7-30332104-4	chr7	30331969	30332169	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9694.0	NM_001033140	68332.0	Mm.6844	NM_001033140	ENSMUSG00000074211	Sdhaf1	0610010E21Rik|AI430885|AW490662|Lyrm8	succinate dehydrogenase complex assembly factor 1	protein-coding	-0.46940064029184	-0.455955402424306	-0.460349390564079	-0.463746670527688	-0.468558434167481	0.0684194636190325	0.250089184293825	-0.46315271595132	3.63951279130103	0.169023049387002	1
Merged-chr11-119445670-2	chr11	119445550	119445750	+	694.916626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45585.0	NR_153849	78439.0	Mm.440446	NR_153849	ENSMUSG00000109408	A930037H05Rik	Gm44935	RIKEN cDNA A930037H05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-124626626-4	chr2	124626515	124626715	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291000, intron 1 of 18)	intron (NM_001291000, intron 1 of 18)	16319.0	NM_172537	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-103348722-4	chr12	103348624	103348824	+	862.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023049, intron 1 of 9)	intron (NM_023049, intron 1 of 9)	7277.0	NM_023049	65256.0	Mm.27159	NM_023049	ENSMUSG00000021200	Asb2	1110008E15Rik	ankyrin repeat and SOCS box-containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-41460086-4	chr13	41459976	41460176	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111324, intron 1 of 7)	intron (NM_001111324, intron 1 of 7)	27284.0	NM_001111324	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-155492472-4	chr4	155492387	155492587	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160017, intron 1 of 10)	CpG	1126.0	NM_001160016	14688.0	Mm.2344	NM_008142	ENSMUSG00000029064	Gnb1	AA409223|C77571|Gnb-1	guanine nucleotide binding protein (G protein), beta 1	protein-coding	1.79650998657828	0.923973426845699	0.904236606996736	1.99694558872689	2.11603353122013	1.84645979108014	0.90864138436923	1.11551431933364	0.27246872412177	0.840536926802791	0.998431161219273
Merged-chr3-110250181-4	chr3	110250112	110250312	+	980.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_024139, exon 1 of 2)	non-coding (NR_024139, exon 1 of 2)	787.0	NM_178891	99890.0	Mm.36115	NM_178891	ENSMUSG00000049300	Prmt6	AW124876|BB233495|Hrmt1l6	protein arginine N-methyltransferase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-79181364-4	chr3	79181244	79181444	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31575.0	NR_045502	70924.0	Mm.444622	NR_045502	ENSMUSG00000104585	4921511C10Rik	-	RIKEN cDNA 4921511C10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-81925136-4	chr3	81925050	81925250	+	914.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7451.0	NM_177662	229445.0	Mm.254642	NM_177662	ENSMUSG00000028015	Ctso	A330105D01Rik|AI118514	cathepsin O	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-103102631-4	chr3	103102538	103102738	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-24918.0	NM_177857	329727.0	Mm.293641	NM_177857	ENSMUSG00000007379	Dennd2c	A930010I20Rik	DENN/MADD domain containing 2C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-98697716-2	chr7	98697616	98697816	+	1000.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_144495, exon 1 of 1)	non-coding (NR_144495, exon 1 of 1)	5212.0	NR_144495	100040769.0	Mm.126401	NR_144495		Gm15506	-	predicted gene 15506	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-20916369-2	chr9	20916269	20916469	+	693.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199432, intron 27 of 38)	intron (NM_001199432, intron 27 of 38)	-2205.0	NR_106049	102466802.0		NR_106049	ENSMUSG00000099147	Mir7081	Gm27904|mmu-mir-7081	microRNA 7081	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28950961-4	chr17	28950866	28951066	+	861.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1470.0	NM_001356300	66989.0	Mm.435	NM_025888	ENSMUSG00000005936	Kctd20	2410004N11Rik|AI451943|AW541186|D17Ertd562e	potassium channel tetramerisation domain containing 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-99641534-4	chr12	99641427	99641627	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13553.0	NR_045288	73457.0	Mm.383439	NR_045288	ENSMUSG00000100211	1700064M15Rik	-	RIKEN cDNA 1700064M15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84966752-2	chr8	84966646	84966846	+	796.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027187)	promoter-TSS (NM_027187)	-735.0	NM_027187	69724.0	Mm.182470	NM_027187	ENSMUSG00000052926	Rnaseh2a	2400006P09Rik|RNASEHI|RNHIA|RNHL	ribonuclease H2, large subunit	protein-coding	1.05327018474948	0.771285114725234	0.251134368247731	0.802569875957422	0.392302801559479	0.259997423748106	0.252733569902062	0.246507273734365	-3.48796740649776	0.0714054466688233	1
Merged-chr8-116478107-2	chr8	116478007	116478207	+	869.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26908.0	NM_029297	75465.0	Mm.23114	NM_029297	ENSMUSG00000034467	Dynlrb2	1700009A04Rik|DNLC2B|Dncl2b	dynein light chain roadblock-type 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59265787-4	chr15	59265699	59265899	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41149.0	NR_045613	100416830.0	Mm.490788	NR_045613	ENSMUSG00000098528	Zfp572	4930472F24Rik	zinc finger protein 572	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-62494315-2	chr10	62494215	62494415	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011157, exon 3 of 3)	3' UTR (NM_011157, exon 3 of 3)	-7510.0	NM_001358543	30930.0	Mm.260703	NM_133672	ENSMUSG00000020078	Vps26a	AA407240|HB58|Vps26	VPS26 retromer complex component A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-137735080-4	chr6	137734973	137735173	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011499)	promoter-TSS (NM_011499)	-9.0	NM_011499	20901.0	Mm.22584	NM_011499	ENSMUSG00000030224	Strap	AW557906|C78091|C79202|Unrip	serine/threonine kinase receptor associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-35539864-4	chr6	35539773	35539973	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008098)	promoter-TSS (NM_008098)	15.0	NM_008098	14489.0	Mm.182746	NM_008098	ENSMUSG00000029840	Mtpn	5033418D15Rik|Gcdp|V1	myotrophin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-51470959-4	chr6	51470782	51470982	+	999.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_182650)	promoter-TSS (NM_182650)	266.0	NM_007624	12417.0	Mm.280968	NM_007624	ENSMUSG00000029836	Cbx3	HP1g|M32	chromobox 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-7836411-1	chr9	7836311	7836511	+	621.0	f0_balb.idr	intron (NM_007465, intron 1 of 7)	intron (NM_007465, intron 1 of 7)	395.0	NM_001291503	11797.0	Mm.335659	NM_007465	ENSMUSG00000057367	Birc2	AW146227|Api1|Api2|Birc3|C-IAP1|C330006D17Rik|HIAP1|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF48|cIAP1|cIAP2|mcIAP1	baculoviral IAP repeat-containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27552799-2	chr2	27552699	27552899	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37652.0	NM_080848	140858.0	Mm.28265	NM_080848	ENSMUSG00000026917	Wdr5	2410008O07Rik|AA408785|AA960360|Big|Big-3	WD repeat domain 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-23771200-5	chr11	23771051	23771251	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009044)	promoter-TSS (NM_009044)	-181.0	NM_009044	19696.0	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-76857681-2	chr5	76857581	76857781	+	779.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001163793, exon 6 of 9)	exon (NM_001163793, exon 6 of 9)	17082.0	NM_001163793	320827.0	Mm.101504	NM_001163793	ENSMUSG00000036377	C530008M17Rik	2810489J07Rik|4930529A19Rik|4931405B09Rik|Kiaa1211|mKIAA1211	RIKEN cDNA C530008M17 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-68317617-2	chr8	68317517	68317717	+	583.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_028182, intron 4 of 8)	intron (NM_028182, intron 4 of 8)	41089.0	NM_028182	72281.0	Mm.40974	NM_028182	ENSMUSG00000053886	Sh2d4a	2210402M20Rik|SH2A	SH2 domain containing 4A	protein-coding	0.48278376245769	0.561027810731403	1.33370126858075	0.799851237545447	0.325001784790595	0.351552085445629	0.34299368385411	0.80633226957487	-2.1604815494653	0.222734847542976	1
Merged-chr11-96066335-2	chr11	96066235	96066435	+	795.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172300)	promoter-TSS (NM_172300)	-971.0	NM_172300	268470.0	Mm.38802	NM_172300	ENSMUSG00000014349	Ube2z	AW049199|C030047H17Rik|D11Moh35	ubiquitin-conjugating enzyme E2Z	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-100680228-2	chr5	100680123	100680323	+	774.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_152803, exon 12 of 12)	3' UTR (NM_152803, exon 12 of 12)	-5967.0	NM_027978	71883.0	Mm.260661	NM_027978	ENSMUSG00000029319	Coq2	2310002F18Rik|PHB:PPT	coenzyme Q2 4-hydroxybenzoate polyprenyltransferase	protein-coding	1.56934348811849	2.11714062924522	1.48734930647197	1.829488852712	2.70098230175718	1.26432081645044	2.99933778373001	2.54088547305944	1.78550092219699	0.0678388017009375	0.390561392902039
Merged-chr2-129798053-2	chr2	129797955	129798155	+	616.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_029452)	TTS (NR_029452)	-2462.0	NM_183262	67333.0	Mm.389329	NM_183262	ENSMUSG00000037885	Stk35	1700054C12Rik|CLIK1|Stk35l1	serine/threonine kinase 35	protein-coding	1.68210967800819	0.818135185697157	1.33020913765568	1.52037827168888	0.778107460791715	1.52965294900659	0.807437922980032	1.41988615088454	-0.74192407531895	0.604447205089415	0.973889860145757
Merged-chr9-47742118-2	chr9	47742020	47742220	+	639.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	76088.0	NR_046048	100038460.0	Mm.447649	NR_046048		Gm10677	-	predicted gene 10677	ncRNA	1.70849370267631	1.58309132887367	1.72079491501084	0.678966270893952	0.661480340645197	1.32520909564587	0.694452757839314	0.681093176826873	-2.59146384729015	0.0992220713047799	0.490045060259026
Merged-chr17-17884991-4	chr17	17884904	17885104	+	997.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1065.0	NM_013521	14293.0	Mm.56951	NM_013521	ENSMUSG00000045551	Fpr1	FPR|LXA4R|fMLF-R	formyl peptide receptor 1	protein-coding	-0.158544990987299	-0.616225309767111	-0.0545772010454144	-0.622378546260677	-0.626154884647336	-0.615440859682918	-0.618935220173852	-0.621911130231402	-3.31291289056247	0.239472246602227	1
Merged-chr5-5359467-3	chr5	5359371	5359571	+	984.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011074, intron 2 of 14)	B3A|SINE|B2	20780.0	NM_011074	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	2.52319867176391	2.95364113017911	3.22794680948646	2.53653800469882	3.21451054448473	2.7227668391874	3.59666239946744	2.40968707333726	0.414063070201998	0.547648913880321	0.957826773868235
Merged-chr11-106159461-4	chr11	106159321	106159521	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001356459, exon 2 of 5)	5' UTR (NM_001356459, exon 2 of 5)	506.0	NM_001356459	67803.0	Mm.21687	NM_172397	ENSMUSG00000040699	Limd2	0610025L06Rik|AI413966	LIM domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-186584051-4	chr1	186583941	186584141	+	935.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25360.0	NR_131158	320449.0	Mm.404477	NR_131124	ENSMUSG00000103690	A730004F24Rik	-	RIKEN cDNA A730004F24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-117931624-2	chr5	117931524	117931724	+	601.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008712, intron 19 of 27)	intron (NM_008712, intron 19 of 27)	-45146.0	NM_145564	231670.0	Mm.21912	NM_145564	ENSMUSG00000032898	Fbxo21	2810425J22Rik|AU016673	F-box protein 21	protein-coding	-0.961808289013217	-0.941143281918953	-0.953353259954851	-0.9565109400711	-0.961015840561242	-0.938024035002784	0.030272756003758	-0.955957512668286	3.38343409954699	0.275427317743097	1
Merged-chr7-45680047-2	chr7	45679947	45680147	+	998.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271578, intron 3 of 3)	Tigger7|DNA|TcMar-Tigger	-3975.0	NM_001358870	243967.0	Mm.291240	NM_001033356	ENSMUSG00000070564	Ntn5	Gm484	netrin 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-75802108-4	chr2	75802010	75802210	+	966.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30067.0	NM_172666	228061.0	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-98575461-4	chr6	98575371	98575571	+	940.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-232717.0	NM_001128092	330390.0	Mm.484161	NM_001128092	ENSMUSG00000090667	Gm765	-	predicted gene 765	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-64108712-2	chr15	64108612	64108812	+	629.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 24 of 28)	intron (NM_001276461, intron 24 of 28)	-48264.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-99655799-6	chr6	99655720	99655920	+	979.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025829, intron 1 of 6)	ORR1E|LTR|ERVL-MaLR	10951.0	NM_025829	66892.0	Mm.32889	NM_025829	ENSMUSG00000093661	Eif4e3	1300018P11Rik|AI451927|eIF4E-3	eukaryotic translation initiation factor 4E member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126786201-2	chr7	126786101	126786301	+	859.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_011538)	TTS (NM_011538)	4718.0	NM_011538	21389.0	Mm.727	NM_011538	ENSMUSG00000030699	Tbx6	rv	T-box 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76477357-4	chr15	76477262	76477462	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001331154)	promoter-TSS (NM_001331154)	0.0	NM_001331153	15499.0	Mm.347444	NM_008296	ENSMUSG00000022556	Hsf1	AA960185|HSTF|HSTF 1|Hsf1alpha|Hsf1beta	heat shock factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-144570820-2	chr3	144570720	144570920	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011828)	promoter-TSS (NM_011828)	393.0	NM_053102	93684.0	Mm.29812	NM_053102	ENSMUSG00000037072	Selenof	9430015P09Rik|Sep15	selenoprotein F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-151862594-4	chr4	151862495	151862695	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001195565)	promoter-TSS (NM_001195565)	-827.0	NM_001195565	100072.0	Mm.318846	NM_001081557	ENSMUSG00000014592	Camta1	1810059M14Rik|2310058O09Rik|AI316882|AW987475|mKIAA0833	calmodulin binding transcription activator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126474572-2	chr7	126474472	126474672	+	908.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289540, intron 1 of 10)	intron (NM_001289540, intron 1 of 10)	558.0	NM_001289538	20399.0	Mm.8538	NM_011363	ENSMUSG00000030733	Sh2b1	AI425885|C530001K22Rik|Irip|Psm|SH2-B|SH2-Bb|Sh2bpsm1|mKIAA1299	SH2B adaptor protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-77096469-3	chr15	77096365	77096565	+	957.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_108037)	TTS (NR_108037)	12067.0	NR_108037	74303.0	Mm.444304	NR_108037	ENSMUSG00000097267	1700109K24Rik	4933425G21Rik	RIKEN cDNA 1700109K24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166553130-2	chr2	166553030	166553230	+	585.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11392.0	NR_152154	433503.0	Mm.491336	NR_152154		Gm29679	-	predicted gene, 29679	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-146150028-8	chr3	146149925	146150125	+	995.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001005846)	promoter-TSS (NM_001005846)	-149.0	NM_001005846	68279.0	Mm.116862	NM_026656	ENSMUSG00000011008	Mcoln2	3300002C04Rik|AI549968|C86638|TRPML2	mucolipin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-65959163-2	chr5	65959063	65959263	+	848.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7961.0	NM_001081104	231252.0	Mm.140015	NM_001081104	ENSMUSG00000029205	Chrna9	2410015I05Rik|Acra9|EG666827|Gm8311	cholinergic receptor, nicotinic, alpha polypeptide 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-116017730-2	chr4	116017630	116017830	+	1000.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_151700, exon 1 of 15)	non-coding (NR_151700, exon 1 of 15)	194.0	NM_010173	14073.0	Mm.256025	NM_010173	ENSMUSG00000034171	Faah	AW412498	fatty acid amide hydrolase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-37777585-4	chr13	37777487	37777687	+	816.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48451.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28734622-2	chr17	28734522	28734722	+	563.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001168508, intron 8 of 11)	intron (NM_001168508, intron 8 of 11)	-34695.0	NM_011950	26415.0	Mm.27970	NM_011950	ENSMUSG00000004864	Mapk13	SAPK4|Serk4	mitogen-activated protein kinase 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41311166-2	chr19	41311126	41311326	+	679.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 8 of 16)	LTR87|LTR|ERVL?	-47222.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	0.370488432838088	0.597084545777926	0.242221524928424	0.536834840866229	0.608008139834346	0.249865385808116	0.243597451590108	0.95268888304828	0.734002226639331	0.68962430120239	1
Merged-chr5-147435537-1	chr5	147435437	147435637	+	639.5	f0_balb.idr	intron (NM_028291, intron 1 of 18)	intron (NM_028291, intron 1 of 18)	5381.0	NM_028291	72587.0	Mm.320469	NM_028291	ENSMUSG00000029647	Pan3	2700050F09Rik|A430027N15Rik|AU014670	PAN3 poly(A) specific ribonuclease subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-37305550-4	chr15	37305450	37305650	+	986.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026496, intron 7 of 15)	intron (NM_026496, intron 7 of 15)	-72391.0	NR_155442	105245924.0	Mm.391911	NR_155441	ENSMUSG00000089804	Gm16136	-	predicted gene 16136	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-68362418-1	chr8	68362318	68362518	+	545.0	f0_balb.idr	intron (NM_172753, intron 8 of 9)	intron (NM_172753, intron 8 of 9)	-6041.0	NR_038189	73609.0	Mm.443247	NR_038181	ENSMUSG00000085197	1700125H03Rik	4930510D22Rik	RIKEN cDNA 1700125H03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-31412698-4	chr6	31412590	31412790	+	988.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013791, intron 1 of 17)	B3|SINE|B2	13862.0	NM_013791	27418.0	Mm.238038	NM_013791	ENSMUSG00000025609	Mkln1	A130067F06Rik|AU015903|BB154892	muskelin 1, intracellular mediator containing kelch motifs	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-114294726-2	chr7	114294623	114294823	+	565.0	f0_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-18607.0	NM_011965	26440.0	Mm.121265	NM_011965	ENSMUSG00000030751	Psma1	C2|HC2|Pros-30|alpha-type	proteasome (prosome, macropain) subunit, alpha type 1	protein-coding	0.347303913656447	0.562340112859586	0.651297116614788	0.504870749648475	0.351332153887769	0.232574840222479	0.660430828655394	0.222468434839225	-1.01155890629885	0.56961346629369	1
Merged-chr18-63702563-2	chr18	63702463	63702663	+	613.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-6132.0	NM_001360837	104082.0	Mm.30850	NM_001014981	ENSMUSG00000040560	Wdr7	AI462727|TRAG|mKIAA0541	WD repeat domain 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-55957377-4	chr7	55957294	55957494	+	998.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023647, intron 1 of 6)	intron (NM_023647, intron 1 of 6)	5099.0	NM_001256133	93790.0	Mm.37249	NM_023647	ENSMUSG00000030452	Nipa2	2600017P10Rik|3830408P04Rik|AB041581	non imprinted in Prader-Willi/Angelman syndrome 2 homolog (human)	protein-coding	3.18356031040574	3.57876026910831	3.78109131532011	3.44741652318061	3.45132045310746	4.00513962931408	4.06639825854717	4.11052396711436	0.615495906924623	0.214267508375843	0.704581097796464
Merged-chr15-64301491-1	chr15	64301391	64301591	+	610.0	f0_balb.idr	intron (NM_001276461, intron 3 of 28)	intron (NM_001276461, intron 3 of 28)	11182.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-173352963-2	chr2	173352863	173353063	+	715.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-76430.0	NM_022995	65112.0	Mm.73682	NM_022995	ENSMUSG00000038400	Pmepa1	2210418I02Rik|AW455466|Erg1.2|N4wbp4|Stag1|Tmepai	prostate transmembrane protein, androgen induced 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3906634-3	chr12	3906552	3906752	+	916.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153743, intron 16 of 17)	intron (NM_153743, intron 16 of 17)	14908.0	NM_153743	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-143822958-4	chr7	143822842	143823042	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007856)	promoter-TSS (NM_007856)	-90.0	NM_030221	78914.0	Mm.35104	NM_030221	ENSMUSG00000031090	Nadsyn1	9130012B15Rik	NAD synthetase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-143019089-2	chr7	143018989	143019189	+	820.333374	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001128080, exon 9 of 9)	3' UTR (NM_001128080, exon 9 of 9)	13430.0	NM_001128081	27027.0	Mm.28172	NM_020286	ENSMUSG00000000244	Tspan32	AW208513|Art-1|BB235973|D7Wsu37e|Phemx|Tssc6	tetraspanin 32	protein-coding	-1.84371485578039	-1.81332821174849	-1.82251738371298	-1.83006564316449	-1.84158176955426	-1.81133687985023	-1.5312619047181	-1.82871450833159	1.60090129203521	0.64914985597185	1
Merged-chr4-132798122-4	chr4	132798036	132798236	+	979.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1772.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-53594835-4	chr17	53594764	53594964	+	893.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001190846, intron 1 of 17)	C-rich|Low_complexity|Low_complexity	10738.0	NM_001190846	18519.0	Mm.255025	NM_020005	ENSMUSG00000000708	Kat2b	A930006P13Rik|AI461839|AW536563|Pcaf|p/CAF	K(lysine) acetyltransferase 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-81304301-4	chr7	81304200	81304400	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008803, intron 8 of 21)	intron (NM_008803, intron 8 of 21)	40934.0	NM_009092	20068.0	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-127338589-4	chr6	127338491	127338691	+	842.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30624.0	NR_073373	232386.0	Mm.257367	NR_073373	ENSMUSG00000107153	Gm38404	D130058E03	predicted gene, 38404	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6415598-2	chr19	6415498	6415698	+	577.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_011242)	TTS (NM_011242)	-3140.0	NM_001205235	18190.0	Mm.329616	NM_020253	ENSMUSG00000033768	Nrxn2	6430591O13Rik|mKIAA0921	neurexin II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-20980002-4	chr9	20979899	20980099	+	943.783325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3206.0	NM_010333	14739.0	Mm.46493	NM_010333	ENSMUSG00000043895	S1pr2	1100001A16Rik|Edg5|Gpcr13|H218|LPb2|S1P2	sphingosine-1-phosphate receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153267500-2	chr2	153267400	153267600	+	734.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_080463, exon 7 of 7)	3' UTR (NM_080463, exon 7 of 7)	-23916.0	NM_008444	16569.0	Mm.315560	NM_008444	ENSMUSG00000027475	Kif3b	AI854312|AW549267|mKIAA0359	kinesin family member 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-156014113-4	chr1	156014038	156014238	+	793.087524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160018, intron 8 of 9)	intron (NM_001160018, intron 8 of 9)	20679.0	NM_001160019	208263.0	Mm.211654	NM_144791	ENSMUSG00000026466	Tor1aip1	LAP1|Lap1B	torsin A interacting protein 1	protein-coding	-1.50695881233615	-1.47408814243565	-1.48402850432579	-1.49219381354826	-1.50465135208702	-1.31552675169925	-1.16896367858519	-1.49073222710138	2.21131002536405	0.516250060543101	1
Merged-chr13-101917437-2	chr13	101917337	101917537	+	713.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-149220.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-55665323-4	chr1	55665204	55665404	+	690.025024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114663, intron 1 of 5)	intron (NM_001114663, intron 1 of 5)	259358.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	1.88769845179752	1.33380318645876	2.16418394707928	1.98388516514004	2.29787500226229	1.97275233740339	2.39630722454517	2.41330988825183	1.04805515649291	0.262001256036518	0.763414692619887
Merged-chr10-81268198-4	chr10	81268076	81268276	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018758)	promoter-TSS (NM_018758)	4.0	NM_018758	57267.0	Mm.293931	NM_018758	ENSMUSG00000004931	Apba3	AW208791|Mint-3|X11gamma|lin-10|mint3	amyloid beta (A4) precursor protein-binding, family A, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-117887367-4	chr4	117887243	117887443	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033617)	promoter-TSS (NM_033617)	-14.0	NM_033617	114143.0	Mm.207052	NM_033617	ENSMUSG00000033379	Atp6v0b	2310024H13Rik|Atp6f|VMA16	ATPase, H+ transporting, lysosomal V0 subunit B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30753309-1	chr2	30753209	30753409	+	555.0	f0_balb.idr	Intergenic	Intergenic	32099.0	NR_037272	100526499.0		NR_037272	ENSMUSG00000093091	Mir3089	mir-3089|mmu-mir-3089	microRNA 3089	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35252067-1	chr17	35251967	35252167	+	570.0	f1_c57bl6.idr	TTS (NR_106169)	TTS (NR_106169)	778.0	NR_106169	102465886.0		NR_106169	ENSMUSG00000098269	Mir8094	Gm27513|mmu-mir-8094	microRNA 8094	ncRNA	0.0522620796294322	0.707475022831876	0.0652466653740569	0.0603783866506502	0.0534722728626235	0.0729489184514004	0.548664270775104	0.722606604088998	0.810590446202733	0.711062968241643	1
Merged-chr12-76491078-3	chr12	76490993	76491193	+	786.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42119.0	NR_039597	100628604.0		NR_039597	ENSMUSG00000092738	Mir5135	mir-5135|mmu-mir-5135|mu-mir-5135	microRNA 5135	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-15887255-4	chr16	15887168	15887368	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007679)	promoter-TSS (NM_007679)	-18.0	NM_007679	12609.0	Mm.347407	NM_007679	ENSMUSG00000071637	Cebpd	c/EBPdelta	CCAAT/enhancer binding protein (C/EBP), delta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-98986340-4	chr9	98986258	98986458	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001122851)	promoter-TSS (NM_001122851)	-15.0	NM_011810	23873.0	Mm.74605	NM_011810	ENSMUSG00000032463	Faim	-	Fas apoptotic inhibitory molecule	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-39244181-3	chr6	39244060	39244260	+	678.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37387.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-104395693-5	chr8	104395513	104395713	+	931.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_153582, exon 1 of 4)	exon (NM_153582, exon 1 of 4)	194.0	NM_153582	97487.0	Mm.29658	NM_153582	ENSMUSG00000096188	Cmtm4	Cklfsf4|D19397|Gm9853	CKLF-like MARVEL transmembrane domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-84755026-2	chr12	84754926	84755126	+	554.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_023409, exon 4 of 4)	3' UTR (NM_023409, exon 4 of 4)	18086.0	NM_023409	67963.0	Mm.282556	NM_023409	ENSMUSG00000021242	Npc2	2700012J19Rik|AA408070|AU045843|HE1	NPC intracellular cholesterol transporter 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117084574-2	chr11	117084474	117084674	+	587.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7226.0	NR_105853	102465258.0		NR_105853	ENSMUSG00000104740	Mir6516	mmu-mir-6516	microRNA 6516	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-22806637-4	chr8	22806539	22806739	+	951.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001122820)	promoter-TSS (NM_001122820)	-985.0	NM_001122820	64933.0	Mm.390023	NM_029505	ENSMUSG00000031539	Ap3m2	5830445E16Rik|AP-3B	adaptor-related protein complex 3, mu 2 subunit	protein-coding	-1.05877568042897	-1.03501312238488	-1.04817210678232	-1.05426068996071	-1.05810152525527	-1.03216151557194	-0.188696606725984	-1.05378786495764	3.16074139804981	0.330468818528456	1
Merged-chr3-88651267-2	chr3	88651167	88651367	+	631.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_181817)	TTS (NM_181817)	1875.0	NM_181817	242093.0	Mm.269130	NM_181817	ENSMUSG00000049741	Rxfp4	GPCR142|Gpr100|Rln3r2|SALPR	relaxin family peptide receptor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-17276302-4	chr16	17276208	17276408	+	973.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177473)	promoter-TSS (NM_177473)	8.0	NM_177473	224019.0	Mm.246388	NM_177473	ENSMUSG00000055692	Tmem191c	4933405M22Rik|D16Bwg1494e|MNCb-4137	transmembrane protein 191C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-17234149-4	chr16	17234050	17234250	+	925.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178922, intron 1 of 2)	intron (NM_178922, intron 1 of 2)	563.0	NM_178922	58180.0	Mm.261602	NM_178922	ENSMUSG00000050240	Hic2	AA409108|HRG22|mKIAA1020	hypermethylated in cancer 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171646623-4	chr1	171646515	171646715	+	900.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347184, intron 1 of 5)	intron (NM_001347184, intron 1 of 5)	2384.0	NM_001347184	75345.0	Mm.164642	NM_144539	ENSMUSG00000038179	Slamf7	19A|19A24|4930560D03Rik|CRACC|CS1	SLAM family member 7	protein-coding	4.25888494532093	4.13029625094828	4.50447021628799	3.94391192551892	2.65091618925825	3.15441637590657	2.6019888011098	1.58986845347011	-2.50716562983935	2.32255421133404e-05	0.000914639127820102
Merged-chr8-46818332-4	chr8	46818221	46818421	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152560, intron 5 of 7)	intron (NR_152560, intron 5 of 7)	78576.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-114360774-2	chr7	114360655	114360855	+	734.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_029438, intron 2 of 4)	ORR1D2|LTR|ERVL-MaLR	54406.0	NR_029437	71045.0	Mm.235682	NR_029437	ENSMUSG00000087475	4933406I18Rik	4933403D24Rik	RIKEN cDNA 4933406I18 gene	ncRNA	-0.0833327144559265	0.417183710630775	-0.0731264452131314	0.447793808335511	-0.0823865576046631	0.426544532495835	-0.0720277080897574	-0.0762963974767346	-1.0514053409077	0.650089231695317	1
Merged-chr7-19786007-2	chr7	19785907	19786107	+	623.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161844, intron 6 of 10)	intron (NM_001161844, intron 6 of 10)	10802.0	NM_001161844	80794.0	Mm.81698	NM_023224	ENSMUSG00000040525	Cblc	2310076I21Rik|2310079L19Rik|Cbl3	Casitas B-lineage lymphoma c	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-9841278-3	chr18	9841168	9841368	+	876.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130449, intron 3 of 9)	intron (NM_130449, intron 3 of 9)	-116912.0	NM_153552	225160.0	Mm.219648	NM_153552	ENSMUSG00000024287	Thoc1	3110002N20Rik|AW107452|NMP-84	THO complex 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-95824335-4	chr11	95824236	95824436	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153104)	promoter-TSS (NM_153104)	-164.0	NM_153104	237928.0	Mm.133075	NM_153104	ENSMUSG00000050860	Phospho1	D11Moh36|Phospo1	phosphatase, orphan 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-76207776-2	chr9	76207676	76207876	+	619.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153419, intron 2 of 7)	intron (NR_153419, intron 2 of 7)	5881.0	NM_205844	404194.0	Mm.213862	NM_205844	ENSMUSG00000059383	Gfral	AY457637|Gral	GDNF family receptor alpha like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36345211-4	chr1	36345123	36345323	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172652, intron 16 of 20)	intron (NM_172652, intron 16 of 20)	3535.0	NR_105863	102465541.0		NR_105863	ENSMUSG00000098680	Mir6898	Gm27816|mmu-mir-6898	microRNA 6898	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-96372917-2	chr10	96372817	96373017	+	819.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	146710.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-124602208-2	chr2	124602108	124602308	+	675.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290997, intron 5 of 20)	intron (NM_001290997, intron 5 of 20)	-8088.0	NM_199238	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-119207435-6	chr12	119207313	119207513	+	921.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177290, intron 2 of 13)	intron (NM_177290, intron 2 of 13)	30863.0	NM_177290	320910.0	Mm.217000	NM_177290	ENSMUSG00000025321	Itgb8	4832412O06Rik	integrin beta 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-98014069-2	chr3	98013969	98014169	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010928, intron 1 of 33)	intron (NM_010928, intron 1 of 33)	531.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-13687338-2	chr9	13687238	13687438	+	679.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_173776, intron 1 of 3)	intron (NM_173776, intron 1 of 3)	24878.0	NM_173776	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-56391894-2	chr19	56391794	56391994	+	987.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1856.0	NM_001286552	18175.0	Mm.386769	NM_008733	ENSMUSG00000049134	Nrap	-	nebulin-related anchoring protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80338573-2	chr10	80338473	80338673	+	558.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 1 of 4)	intron (NR_038088, intron 1 of 4)	8428.0	NM_139292	70335.0	Mm.28147	NM_139292	ENSMUSG00000035504	Reep6	0610011M24Rik|Dp1l1	receptor accessory protein 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-30592528-4	chr3	30592465	30592665	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7305.0	NM_029690	76652.0	Mm.116928	NM_029690	ENSMUSG00000037737	Actrt3	1700119I24Rik|ARP-T3|Arpm1	actin related protein T3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10023385-4	chr19	10023251	10023451	+	925.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153790, intron 1 of 10)	intron (NR_153790, intron 1 of 10)	5157.0	NM_001347430	74760.0	Mm.281969	NM_144538	ENSMUSG00000024663	Rab3il1	1200014K04Rik|AI115013|C76746|Rab3ail1	RAB3A interacting protein (rabin3)-like 1	protein-coding	1.32465840552956	1.03880560243981	0.806170979978861	1.40388422815808	1.09815644774694	1.63946386325996	0.809071535955424	1.7056563730574	0.801109817965108	0.556506325963451	0.960321604678676
Merged-chr3-109051922-4	chr3	109051832	109052032	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24325.0	NM_001163567	329739.0	Mm.69013	NM_001163567	ENSMUSG00000040339	Fam102b	1600010D10Rik|B430201A12Rik	family with sequence similarity 102, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-122898521-4	chr4	122898412	122898612	+	947.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12436.0	NM_001358036	12331.0	Mm.8687	NM_007598	ENSMUSG00000028656	Cap1	-	CAP, adenylate cyclase-associated protein 1 (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-97849173-2	chr16	97849073	97849273	+	800.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359077, intron 1 of 23)	intron (NM_001359077, intron 1 of 23)	2054.0	NM_144789	114604.0	Mm.328741	NM_144789	ENSMUSG00000014039	Prdm15	C21orf83|E130018M06Rik|ORF62|Zfp298	PR domain containing 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-86666004-4	chr6	86665889	86666089	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010751, intron 2 of 5)	intron (NM_010751, intron 2 of 5)	3170.0	NM_010751	17119.0	Mm.279580	NM_010751	ENSMUSG00000001156	Mxd1	AW122478|Mad|Mad1	MAX dimerization protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-50206460-4	chr11	50206409	50206609	+	675.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290769, intron 4 of 7)	intron (NM_001290769, intron 4 of 7)	4311.0	NM_001290769	18412.0	Mm.40828	NM_011018	ENSMUSG00000015837	Sqstm1	A170|OSF-6|Osi|STAP|STONE14|p62	sequestosome 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-108655984-2	chr3	108655884	108656084	+	647.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177771, intron 2 of 12)	B2_Mm2|SINE|B2	2044.0	NM_001177770	229725.0	Mm.214545	NM_145543	ENSMUSG00000027884	Clcc1	Mclc	chloride channel CLIC-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-106289060-3	chr9	106288957	106289157	+	812.722229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027354, intron 6 of 10)	intron (NM_027354, intron 6 of 10)	7996.0	NM_027354	70235.0	Mm.23054	NM_027354	ENSMUSG00000023345	Poc1a	2510040D07Rik|Wdr51a|cha	POC1 centriolar protein A	protein-coding	1.92103969644494	1.98828683986465	1.67988217155058	0.942315912865726	0.919371852295798	1.75859773921014	0.962495712515567	1.96051102570459	-0.609431462441575	0.642668195183832	0.982823301118608
Merged-chr17-86504566-1	chr17	86504466	86504666	+	556.0	f1_c57bl6.idr	intron (NM_011104, intron 10 of 14)	ORR1F|LTR|ERVL-MaLR	-217388.0	NR_045435	72104.0	Mm.443401	NR_045435	ENSMUSG00000100738	2010106C02Rik	-	RIKEN cDNA 2010106C02 gene	ncRNA	-0.734697168562934	-1.28094420828655	-1.29131886204401	-1.29984091153697	-1.31008363841169	-1.2786959775384	-1.28897026783925	-1.29831546875223	-2.42902550944018	0.482518537989684	1
Merged-chr2-168010102-4	chr2	168009998	168010198	+	907.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080708, intron 1 of 21)	intron (NM_001080708, intron 1 of 21)	495.0	NM_001080708	69553.0	Mm.68454	NM_001080708	ENSMUSG00000074577	Ripor3	2310033K02Rik|Fam65c|Gm124	RIPOR family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-39264865-3	chr6	39264771	39264971	+	681.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58098.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117320143-4	chr11	117320050	117320250	+	951.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113486, intron 3 of 11)	intron (NM_001113486, intron 3 of 11)	-11565.0	NM_017380	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21469272-4	chr9	21469226	21469426	+	819.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357721, intron 4 of 19)	intron (NM_001357721, intron 4 of 19)	27238.0	NR_029585	387194.0		NR_029585	ENSMUSG00000065547	Mir199a-1	Mirn199|Mirn199a-1|mir-199a-1	microRNA 199a-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21464009-4	chr9	21463922	21464122	+	940.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357721, intron 2 of 19)	ID_B1|SINE|B4	32542.0	NR_029585	387194.0		NR_029585	ENSMUSG00000065547	Mir199a-1	Mirn199|Mirn199a-1|mir-199a-1	microRNA 199a-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-22962856-2	chr8	22962756	22962956	+	791.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC5|LINE|L1	-11980.0	NM_001110783	11733.0	Mm.334444	NM_031158	ENSMUSG00000031543	Ank1	Ank-1|nb|pale	ankyrin 1, erythroid	protein-coding	1.3810836561656	1.55656308311049	1.16204162899831	0.925177055847039	1.96405331864734	1.95282490276367	0.943292379054267	1.81528542615816	1.56929040419958	0.210323146981139	0.69949048545273
Merged-chr11-119047110-2	chr11	119047010	119047210	+	722.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6197.0	NM_013926	30951.0	Mm.99953	NM_013926	ENSMUSG00000025578	Cbx8	Pc3	chromobox 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-31410739-2	chr15	31410639	31410839	+	597.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	42950.0	NM_145852	252967.0	Mm.436668	NM_145852	ENSMUSG00000022236	Ropn1l	ASP|AV047578|Akapasp	ropporin 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6387216-1	chr19	6387116	6387316	+	541.0	f1_balb.idr	intron (NM_011224, intron 5 of 19)	intron (NM_011224, intron 5 of 19)	2808.0	NM_011224	19309.0	Mm.27806	NM_011224	ENSMUSG00000032648	Pygm	AI115133|PG	muscle glycogen phosphorylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-45095719-3	chr9	45095620	45095820	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005421, intron 6 of 10)	intron (NM_001005421, intron 6 of 10)	16537.0	NM_001005421	270152.0	Mm.190461	NM_001005421	ENSMUSG00000048534	Jaml	AMICA|Amica1|Crea7|Gm638	junction adhesion molecule like	protein-coding	2.28362891735167	2.99767047785033	2.4917817165966	2.56251635068083	3.55534703832906	3.84265790240426	2.66281342221109	3.55538250760525	1.50946678043121	0.0210966543064392	0.186024736674663
Merged-chr5-30871955-4	chr5	30871834	30872034	+	972.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144525, intron 4 of 16)	intron (NM_144525, intron 4 of 16)	2355.0	NM_144525	68796.0	Mm.205169	NM_144525	ENSMUSG00000038828	Tmem214	1110039B18Rik|4921530J21Rik|AI841294|AU018742|C76280	transmembrane protein 214	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91376325-1	chr16	91376225	91376425	+	628.0	f0_balb.idr	intron (NM_001347258, intron 1 of 7)	intron (NM_001347258, intron 1 of 7)	3542.0	NM_001110498	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-132157487-4	chr1	132157345	132157545	+	793.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17760.0	NM_008795	18557.0	Mm.28130	NM_008795	ENSMUSG00000026437	Cdk18	AA682070|Ctk18|Pctk3	cyclin-dependent kinase 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-181519871-2	chr2	181519750	181519950	+	691.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016775)	promoter-TSS (NM_016775)	-635.0	NM_016775	13002.0	Mm.140761	NM_016775	ENSMUSG00000000826	Dnajc5	2610314I24Rik|AU018536|Csp	DnaJ heat shock protein family (Hsp40) member C5	protein-coding	2.77236264167588	1.51442296588919	2.64564522973904	2.214749587039	2.86467033520025	2.86109313809805	2.76694383072382	2.2259913092621	0.66068008215399	0.421178559831887	0.900322118218157
Merged-chr9-55296511-4	chr9	55296404	55296604	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F2|LTR|ERVL-MaLR	-12879.0	NM_032002	83961.0	Mm.443874	NM_032002	ENSMUSG00000032311	Nrg4	AI552600	neuregulin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-17264890-4	chr19	17264677	17264877	+	998.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	74728.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	3.15468613622522	3.60274697910788	3.48718402899473	2.75355866144294	2.63126017551223	2.82122902798469	2.97602904629358	3.60491139147832	-0.367159541288718	0.559306526387307	0.960321604678676
Merged-chr8-111551971-1	chr8	111551871	111552071	+	666.0	f0_balb.idr	intron (NM_001168623, intron 1 of 4)	intron (NM_001168623, intron 1 of 4)	13628.0	NM_001168623	170737.0	Mm.271578	NM_133206	ENSMUSG00000033545	Znrf1	B830022L21Rik|Rnf42|Zrfp1|nin283	zinc and ring finger 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-69395568-4	chr8	69395486	69395686	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_038043)	promoter-TSS (NR_038043)	-42.0	NR_038043	378466.0	Mm.37846	NM_194351	ENSMUSG00000110444	Gm10033	9330175B10Rik|Gm10311	predicted gene 10033	ncRNA	4.23920070439191	4.02526174837704	4.09550505706966	4.4025930270131	3.61940718132625	3.97730036880225	4.7171125810756	3.64954755481962	-0.18164452934501	0.690079780808609	0.996533206832645
Merged-chr16-44350185-2	chr16	44350085	44350285	+	593.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144550, intron 1 of 17)	MIR|SINE|MIR	2784.0	NM_144550	212514.0	Mm.24035	NM_144550	ENSMUSG00000043065	Spice1	Ccdc52|D16Ertd480e	spindle and centriole associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-98711717-4	chr7	98711631	98711831	+	982.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355114, intron 4 of 5)	intron (NM_001355114, intron 4 of 5)	8484.0	NM_028410	72981.0	Mm.4428	NM_028410	ENSMUSG00000030753	Thap12	2900052B10Rik|Dap4|Prkrir|Rpkrir	THAP domain containing 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-88719631-4	chr10	88719532	88719732	+	917.525024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11469.0	NM_001037166	237433.0	Mm.478763	NM_001037166		Gm4925	EG237433	predicted gene 4925	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-27259612-2	chr8	27259512	27259712	+	664.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007918)	promoter-TSS (NM_007918)	-715.0	NM_007918	13685.0	Mm.6700	NM_007918	ENSMUSG00000031490	Eif4ebp1	4e-bp1|AA959816|PHAS-I	eukaryotic translation initiation factor 4E binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-115994515-3	chr6	115994456	115994656	+	903.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026376, exon 1 of 36)	exon (NM_026376, exon 1 of 36)	449.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-144660277-2	chr4	144660178	144660378	+	591.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPEY2_LTR|LTR|ERVK	26090.0	NM_001085504	230890.0	Mm.457843	NM_001085504	ENSMUSG00000078505	Gm436	-	predicted gene 436	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28736116-5	chr17	28736004	28736204	+	708.900024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168508, intron 8 of 11)	PB1D10|SINE|Alu	-33213.0	NM_011950	26415.0	Mm.27970	NM_011950	ENSMUSG00000004864	Mapk13	SAPK4|Serk4	mitogen-activated protein kinase 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-106447636-4	chr9	106447543	106447743	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001110272)	promoter-TSS (NM_001110272)	35.0	NM_001359225	68644.0	Mm.268925	NM_145919	ENSMUSG00000042210	Abhd14a	1110013B16Rik|AW558221|Dorz1	abhydrolase domain containing 14A	protein-coding	6.60342466312494	5.8922652249402	6.76095915381792	6.81610679474114	6.51250638483037	6.2750298825363	6.69681994465832	6.60779237985838	-0.037188606232724	0.867809838691251	0.998431161219273
Merged-chr17-35161654-2	chr17	35161554	35161754	+	861.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_020027, exon 5 of 31)	exon (NM_020027, exon 5 of 31)	3223.0	NM_001199044	53761.0	Mm.272462	NM_020027	ENSMUSG00000024393	Prrc2a	3110039B05Rik|Bat-2|Bat2|D17H6S51E|G2|Wbp12|mKIAA4178	proline-rich coiled-coil 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-37422035-1	chr9	37421935	37422135	+	547.0	f1_c57bl6.idr	intron (NM_001164767, intron 14 of 27)	intron (NM_001164767, intron 14 of 27)	11140.0	NM_001164767	19649.0	Mm.212826	NM_011248	ENSMUSG00000032128	Robo3	Rbig1|Rig-1|Rig1|Robo3a|Robo3b	roundabout guidance receptor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-97564960-3	chr4	97564869	97565069	+	747.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16974.0	NM_001122952	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-187215918-2	chr1	187215818	187216018	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028848)	promoter-TSS (NM_028848)	175.0	NM_001357645	67769.0	Mm.138321	NM_026367	ENSMUSG00000039210	Gpatch2	5830433G22Rik|5830436K05Rik|AI427714|AI447508|AW107440|AW491060|Gpatc2	G patch domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-8891325-2	chr10	8891225	8891425	+	600.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5255.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-7897739-4	chr9	7897628	7897828	+	832.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24558.0	NM_007464	11796.0	Mm.2026	NM_007464	ENSMUSG00000032000	Birc3	AW107670|Api1|Api2|Birc2|C-IAP2|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF49|cIAP-1|cIAP-2|cIAP1|cIAP2	baculoviral IAP repeat-containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-26001728-2	chr9	26001628	26001828	+	657.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	520131.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-99438008-3	chr13	99437919	99438119	+	787.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008634, intron 4 of 6)	L3|LINE|CR1	-25193.0	NR_015515	320893.0	Mm.470842	NR_015515		6430562O15Rik	-	RIKEN cDNA 6430562O15 gene	ncRNA	1.11072192164532	1.76687993574471	1.35049451118224	0.807476916948756	1.11949334592487	1.67351359043348	0.821865959781295	1.4409665740942	-0.020286187478662	0.987943092561691	0.998431161219273
Merged-chr8-119436250-4	chr8	119436160	119436360	+	949.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027950)	promoter-TSS (NM_027950)	-902.0	NM_027950	71839.0	Mm.272357	NM_027950	ENSMUSG00000074063	Osgin1	1700012B18Rik|Okl38	oxidative stress induced growth inhibitor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-38644090-2	chr6	38643990	38644190	+	670.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-6851.0	NM_001033171	74253.0	Mm.121859	NM_001033171	ENSMUSG00000071537	Klrg2	2310020F24Rik	killer cell lectin-like receptor subfamily G, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101830720-2	chr7	101830620	101830820	+	831.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001122739, exon 13 of 29)	exon (NM_001122739, exon 13 of 29)	7104.0	NM_001122739	16332.0	Mm.476000	NM_010567	ENSMUSG00000032737	Inppl1	51C|SHIP2	inositol polyphosphate phosphatase-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-55373315-2	chr13	55373215	55373415	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360714, intron 1 of 14)	intron (NM_001360714, intron 1 of 14)	3583.0	NM_016758	51791.0	Mm.1426	NM_016758	ENSMUSG00000052087	Rgs14	RPIP1	regulator of G-protein signaling 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-136989985-2	chr6	136989882	136990082	+	644.375	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	35459.0	NM_023898	78600.0	Mm.290622	NM_023898	ENSMUSG00000064330	Pde6h	A930033D18Rik|PDEgamma	phosphodiesterase 6H, cGMP-specific, cone, gamma	protein-coding	1.34850874365461	1.30545911056316	1.27447075490745	1.97489923392321	1.35736118003112	2.32628376791897	1.08906593693805	1.98520895471298	0.952005470546204	0.423081457186428	0.900322118218157
Merged-chr3-96527447-2	chr3	96527347	96527547	+	708.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_027126, exon 3 of 4)	exon (NM_027126, exon 3 of 4)	2262.0	NM_027126	69585.0	Mm.171314	NM_027126	ENSMUSG00000038403	Hfe2	2310035L15Rik|5230400G09Rik|AI414844|AI789733|DL-M|HJV|Rgmc|hemojuvelin	hemochromatosis type 2 (juvenile)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80434986-2	chr10	80434886	80435086	+	733.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1333.0	NM_001164148	21423.0	Mm.3406	NM_011548	ENSMUSG00000020167	Tcf3	A1|AA408400|ALF2|AW209082|E12|E12/E47|E2A|E47|KA1|ME2|Pan1|Pan2|TCF-3|Tcfe2a|VDIR|bHLHb21	transcription factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-109288360-4	chr13	109288251	109288451	+	990.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011056, intron 3 of 16)	intron (NM_011056, intron 3 of 16)	-36393.0	NR_030644	100124489.0		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-94608815-2	chr16	94608715	94608915	+	691.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113389, intron 1 of 11)	intron (NM_001113389, intron 1 of 11)	-2604.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-33371418-3	chr14	33371301	33371501	+	819.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CCTG)n|Simple_repeat|Simple_repeat	39623.0	NM_001310452	26419.0	Mm.21495	NM_016700	ENSMUSG00000021936	Mapk8	AI849689|JNK|JNK1|Prkm8|SAPK1	mitogen-activated protein kinase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-40629122-4	chr19	40629016	40629216	+	974.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304721, intron 1 of 9)	intron (NM_001304721, intron 1 of 9)	16750.0	NM_001304721	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	2.64252581737694	2.6369048408959	1.33030277759563	2.27950322265887	2.07350280911139	2.44638584537664	1.79206124751857	2.0508033339821	-0.516695349104371	0.580921402780706	0.966599221005409
Merged-chr15-85090945-4	chr15	85090852	85091052	+	798.866638	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_080470, exon 17 of 25)	exon (NM_080470, exon 17 of 25)	41005.0	NM_080470	140557.0	Mm.182737	NM_080470	ENSMUSG00000022432	Smc1b	SMC-1B|SMC1beta|Smc1l2	structural maintenance of chromosomes 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-120978852-2	chr4	120978752	120978952	+	644.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133716, intron 4 of 9)	B1F2|SINE|Alu	-5530.0	NR_105982	102465614.0		NR_105982	ENSMUSG00000106436	Mir7015	mmu-mir-7015	microRNA 7015	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-81358965-2	chr13	81358865	81359065	+	777.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 83 of 89)	intron (NM_054053, intron 83 of 89)	274179.0	NM_054053	110789.0	Mm.288694	NM_054053	ENSMUSG00000069170	Adgrv1	Frings|Gpr98|Mass1|Mgr1|VLGR1	adhesion G protein-coupled receptor V1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31428366-4	chr14	31428277	31428477	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011894, intron 2 of 8)	intron (NM_011894, intron 2 of 8)	7723.0	NM_011894	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-33672710-2	chr1	33672610	33672810	+	813.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	2886.0	NR_033199	67503.0	Mm.87069	NM_026204	ENSMUSG00000103746	1700001G17Rik	-	RIKEN cDNA 1700001G17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5403421-2	chr17	5403321	5403521	+	652.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15346.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-51934993-4	chr2	51934930	51935130	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001141982)	promoter-TSS (NM_001141982)	133.0	NM_030243	71684.0	Mm.28309	NM_030243	ENSMUSG00000036249	Rbm43	0610033I05Rik	RNA binding motif protein 43	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-99949454-2	chr10	99949354	99949554	+	688.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-66367.0	NM_001347156	17311.0	Mm.45124	NM_013598	ENSMUSG00000019966	Kitl	Clo|Con|Gb|Kitlg|Mgf|SCF|SF|SLF|Sl|blz|contrasted	kit ligand	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31494627-4	chr14	31494544	31494744	+	989.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028932)	promoter-TSS (NM_028932)	114.0	NM_001359850	67011.0	Mm.291731	NM_025907	ENSMUSG00000021891	Mettl6	1600013P15Rik|AI467521|AU020711	methyltransferase like 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-119784449-4	chr8	119784350	119784550	+	997.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6034.0	NM_028883	74347.0	Mm.358759	NM_028883	ENSMUSG00000034105	Tldc1	4632415K11Rik|Kiaa1609	TBC/LysM associated domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-116146643-3	chr9	116146591	116146791	+	703.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029575, intron 1 of 6)	intron (NM_029575, intron 1 of 6)	28672.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	0.632173355641945	1.34740726157495	0.474933189609379	0.465178621140232	1.15387792276926	0.490105997689875	0.477692354479874	1.67188344135188	1.08008246777777	0.526712216067019	0.948839578239191
Merged-chr4-95416862-4	chr4	95416760	95416960	+	974.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-140647.0	NM_001113412	75578.0	Mm.276098	NM_029347	ENSMUSG00000028573	Fggy	2310009E04Rik	FGGY carbohydrate kinase domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-34122215-2	chr11	34122115	34122315	+	645.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23661.0	NR_155520	76874.0	Mm.437529	NR_155520		4930469K13Rik	-	RIKEN cDNA 4930469K13 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-7897319-4	chr17	7897131	7897331	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28769.0	NM_145968	72536.0	Mm.119680	NM_145968	ENSMUSG00000033450	Tagap	2610315E15Rik|TRD|Tcd-1|Tcd1|Tcd1a|tcs-1|tcs1	T cell activation Rho GTPase activating protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-100743475-4	chr15	100743381	100743581	+	983.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-10744.0	NR_045782	619313.0	Mm.123436	NR_045781	ENSMUSG00000116504	I730030J21Rik	-	RIKEN cDNA I730030J21 gene	ncRNA	3.20953356553093	2.17649221322737	3.16449325040208	3.56452572533629	3.09728287456045	1.6561861320235	2.887545557046	3.6379541086922	-0.198754372435575	0.79285237305459	0.998431161219273
Merged-chr6-85915034-2	chr6	85914934	85915134	+	547.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001170488)	promoter-TSS (NM_001170488)	643.0	NM_023160	66116.0	Mm.13036	NM_023160	ENSMUSG00000057103	Nat8f1	1110002I11Rik|AI266962|Cml1	N-acetyltransferase 8 (GCN5-related) family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-75037195-3	chr10	75037091	75037291	+	887.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359272)	promoter-TSS (NM_001359272)	-35.0	NM_001359272	76877.0	Mm.133593	NM_029781	ENSMUSG00000020175	Rab36	6330593L16Rik|AW047545	RAB36, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-49372184-3	chr2	49372084	49372284	+	856.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-79302.0	NM_172663	227867.0	Mm.29167	NM_172663	ENSMUSG00000069495	Epc2	5830499L14|D2Ertd694e	enhancer of polycomb homolog 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27475700-4	chr2	27475616	27475816	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113574)	promoter-TSS (NM_001113574)	-43.0	NM_001113574	67382.0	Mm.28721	NM_023336	ENSMUSG00000026918	Brd3	2410084F24Rik|AW060456|Fsrg2|ORFX|RINGL3	bromodomain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-30673876-1	chr10	30673776	30673976	+	554.0	f0_balb.idr	intron (NM_001358842, intron 9 of 14)	MER90|LTR|ERV1	-18009.0	NM_001111267	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-87908982-1	chr3	87908882	87909082	+	555.0	f1_balb.idr	intron (NM_001331051, intron 1 of 6)	intron (NM_001331051, intron 1 of 6)	2132.0	NM_001331052	15191.0	Mm.292208	NM_008231	ENSMUSG00000004897	Hdgf	AI118077|D3Ertd299e	hepatoma-derived growth factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100242556-4	chr7	100242452	100242652	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027629, intron 1 of 13)	intron (NM_027629, intron 1 of 13)	14945.0	NM_027629	70974.0	Mm.440524	NM_027629	ENSMUSG00000030729	Pgm2l1	4931406N15Rik|AI553438|BM32A	phosphoglucomutase 2-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-85957798-4	chr10	85957678	85957878	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145422)	promoter-TSS (NM_145422)	15.0	NM_145422	28088.0	Mm.9257	NM_145422	ENSMUSG00000001783	Rtcb	AI255213|AI463255|D10Wsu52e|FAAP|HSPC117	RNA 2',3'-cyclic phosphate and 5'-OH ligase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-87596697-1	chr17	87596597	87596797	+	614.0	f0_balb.idr	Intergenic	RLTR45|LTR|ERVK	-39282.0	NM_008532	17075.0	Mm.4259	NM_008532	ENSMUSG00000045394	Epcam	CD326|EGP|EGP-2|Egp314|Ep-CAM|EpCAM1|GA733-2|Ly74|TROP1|Tacsd1|Tacstd1|gp40	epithelial cell adhesion molecule	protein-coding	0.345836276715088	0.0754234723881985	0.0685411014924359	0.0631982264451344	0.472138815763073	1.05579694273715	0.0700631263520708	0.246223784447335	2.69102530866126	0.189163313831449	1
Merged-chr11-49702235-2	chr11	49702135	49702335	+	971.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_212484, intron 2 of 11)	intron (NM_212484, intron 2 of 11)	419.0	NM_001290741	104625.0	Mm.247113	NM_212484	ENSMUSG00000020362	Cnot6	CCR4	CCR4-NOT transcription complex, subunit 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69092933-4	chr11	69092819	69093019	+	830.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009497)	TTS (NM_009497)	4391.0	NM_009497	22318.0	Mm.28643	NM_009497	ENSMUSG00000020894	Vamp2	Syb-2|Syb2|Vamp-2|sybII	vesicle-associated membrane protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-109118271-4	chr9	109118186	109118386	+	986.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172775, exon 38 of 38)	3' UTR (NM_172775, exon 38 of 38)	22850.0	NM_172775	235611.0	Mm.53862	NM_172775	ENSMUSG00000053646	Plxnb1	2900002G15Rik|AU042020|mKIAA0407	plexin B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95663648-2	chr3	95663548	95663748	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_008562)	TTS (NM_008562)	4927.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-59396859-3	chr2	59396759	59396959	+	859.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10177.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-24386483-4	chr2	24386351	24386551	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355232)	promoter-TSS (NM_001355232)	-165.0	NM_001355232	215632.0	Mm.490434	NM_177611	ENSMUSG00000026979	Psd4	BC046518|EFA6B	pleckstrin and Sec7 domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-23712188-4	chr13	23712077	23712277	+	959.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1323.0	NM_010424	15216.0	Mm.2681	NM_010424	ENSMUSG00000006611	Hfe	MR2	hemochromatosis	protein-coding	3.67647578126342	2.73369493634812	3.25155762968386	3.56043077388277	3.85160329405685	2.7547590435843	3.4575355050655	3.64447797298619	0.209799302019143	0.718904438851764	0.998431161219273
Merged-chr13-38634530-3	chr13	38634432	38634632	+	637.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139063, intron 1 of 4)	intron (NM_139063, intron 1 of 4)	577.0	NM_139063	17828.0	Mm.261554	NM_139063	ENSMUSG00000038982	Bloc1s5	1810074A19Rik|Muted|mu	biogenesis of lysosomal organelles complex-1, subunit 5, muted	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119440465-4	chr11	119440366	119440566	+	939.0166630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49994.0	NR_035453	100316690.0		NR_035453	ENSMUSG00000088015	Mir1932	mir-1932|mmu-mir-1932	microRNA 1932	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-144406781-4	chr1	144406695	144406895	+	662.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-157691.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36136236-2	chr1	36136136	36136336	+	898.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	8077.0	NR_105862	102465540.0		NR_105862	ENSMUSG00000098752	Mir6897	Gm27652|mmu-mir-6897	microRNA 6897	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-21786832-3	chr13	21786734	21786934	+	753.722229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178202)	promoter-TSS (NM_178202)	384.0	NM_178184	319170.0		NM_178184	ENSMUSG00000069309	Hist1h2an	-	histone cluster 1, H2an	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-83273914-4	chr4	83273797	83273997	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027238, intron 2 of 19)	intron (NM_027238, intron 2 of 19)	50292.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	5.79384218328279	5.61820861471653	5.54213543311958	6.27582574593887	5.58631781035852	5.46278391960547	5.57882676197428	5.01688829527571	-0.465050155464013	0.0964174350559469	0.48212679174263
Merged-chr10-14207863-4	chr10	14207762	14207962	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	241483.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-193002501-2	chr1	193002395	193002595	+	788.5	f0_c57.idr|f1_c57bl6.idr	intron (NM_001301370, intron 2 of 8)	intron (NM_001301370, intron 2 of 8)	33280.0	NM_001301370	329324.0	Mm.76710	NM_181546	ENSMUSG00000016200	Syt14	B230320I09Rik|sytXIV	synaptotagmin XIV	protein-coding	3.19290479053554	1.9931091940515	3.74290544394934	4.06672517709179	1.26579840719836	1.14520758788001	1.09040297012984	1.04014339981187	-5.92510700853922	1.29531903410811e-06	8.03857126098057e-05
Merged-chr10-19015411-4	chr10	19015309	19015509	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009397)	promoter-TSS (NM_009397)	1.0	NM_009397	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-59354615-3	chr4	59354509	59354709	+	837.633362	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163288, intron 10 of 16)	MLT1D|LTR|ERVL-MaLR	84024.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21287905-6	chr9	21287782	21287982	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145416)	promoter-TSS (NM_145416)	87.0	NM_145416	215194.0	Mm.290690	NM_145416	ENSMUSG00000035047	Kri1	-	KRI1 homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167064220-2	chr2	167064130	167064330	+	814.875	f1_balb.idr|f1_c57bl6.idr	intron (NR_138563, intron 2 of 4)	intron (NR_138563, intron 2 of 4)	-1063.0	NR_028540	100217443.0		NR_028540		Snord12	MBII-99	small nucleolar RNA, C/D box 12	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55920275-2	chr19	55920175	55920375	+	824.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001142920, intron 11 of 11)	intron (NM_001142920, intron 11 of 11)	24954.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-78826565-4	chr11	78826456	78826656	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001076681)	promoter-TSS (NM_001076681)	-39.0	NM_001076681	66274.0	Mm.258932	NM_001076681	ENSMUSG00000072640	Lyrm9	1810012P15Rik	LYR motif containing 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80745478-1	chr7	80745378	80745578	+	678.0	f1_c57bl6.idr	intron (NM_016721, intron 15 of 37)	intron (NM_016721, intron 15 of 37)	-56601.0	NM_173863	70461.0	Mm.392175	NM_173863	ENSMUSG00000030527	Crtc3	2610312F20Rik|6332415K15Rik|AI429792|BC011210|TORC3	CREB regulated transcription coactivator 3	protein-coding	0.565641761266229	1.95334891646578	0.395722137389019	0.792555875819547	0.368785631763168	0.882197403821966	0.837805465106224	0.386674753343435	-1.92082928549298	0.235387761082682	0.731653460484462
Merged-chr5-130164618-2	chr5	130164556	130164756	+	583.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7163.0	NM_001199059	56715.0	Mm.288639	NM_019983	ENSMUSG00000025340	Rabgef1	Rab5ef|Rabex5|Rin2	RAB guanine nucleotide exchange factor (GEF) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91314335-3	chr16	91314242	91314442	+	740.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44573.0	NM_016968	50914.0	Mm.39300	NM_016968	ENSMUSG00000046160	Olig1	AI836478|AW494459|Bhlhb6|Olg-1|Oligo1|bHLHe21	oligodendrocyte transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-25242382-3	chr18	25242288	25242488	+	896.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033532, intron 5 of 10)	intron (NM_001033532, intron 5 of 10)	73368.0	NM_001033532	225289.0	Mm.391081	NM_001033532	ENSMUSG00000033632	AW554918	4921538P22|AI461742|Kiaa1328|mKIAA1328	expressed sequence AW554918	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-55964192-4	chr4	55964095	55964295	+	981.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-431720.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-58599276-1	chr18	58599176	58599376	+	566.5	f0_balb.idr	intron (NM_001081072, intron 5 of 9)	intron (NM_001081072, intron 5 of 9)	43036.0	NM_001081072	225579.0	Mm.258517	NM_001081072	ENSMUSG00000024600	Slc27a6	4732438L20Rik|FACVL2|FATP6|VLCS-H1	solute carrier family 27 (fatty acid transporter), member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118672918-2	chr9	118672790	118672990	+	831.833313	f1_balb.idr|f1_c57bl6.idr	exon (NM_133721, exon 11 of 28)	exon (NM_133721, exon 11 of 28)	-38802.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	1.84454588016207	1.65172103093166	2.84799934744807	2.76503611047184	1.68771400097177	1.66387058405944	2.58117033847727	3.40411361200131	0.341163817006586	0.713540259854451	0.998431161219273
Merged-chr1-191067868-2	chr1	191067768	191067968	+	713.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198654, intron 2 of 5)	intron (NM_198654, intron 2 of 5)	4847.0	NM_198654	381318.0	Mm.32504	NM_198654	ENSMUSG00000062510	Nsl1	4833432M17Rik|AI451597|Gm105|Gm984	NSL1, MIS12 kinetochore complex component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-67243149-4	chr18	67243065	67243265	+	838.224976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172630, intron 2 of 10)	PB1D11|SINE|Alu	2665.0	NM_172630	225651.0	Mm.235792	NM_172630	ENSMUSG00000062526	Mppe1	Pgap5	metallophosphoesterase 1	protein-coding	-0.226554529455951	-0.212168694908356	0.352723633486956	-0.220518136655728	-0.22565655471667	-0.211106190394072	-0.0342643444111315	0.417739754843164	0.510545083969853	0.832049977747571	1
Merged-chr5-135393404-2	chr5	135393304	135393504	+	621.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_148932, intron 1 of 12)	ID_B1|SINE|B4	1142.0	NM_148932	107939.0	Mm.28399	NM_148932	ENSMUSG00000053293	Pom121	2610027A18Rik|C80273|mKIAA0618	nuclear pore membrane protein 121	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-50024196-4	chr18	50024115	50024315	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177759, intron 1 of 1)	intron (NM_001177759, intron 1 of 1)	-6769.0	NM_001360935	106869.0	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	6.64736268312128	6.29174961264768	7.06615604765877	6.59597610928413	6.72770373627469	6.84054216134666	7.10527752267724	6.59552626588244	0.157380095785994	0.446172336830945	0.913719110826868
Merged-chr15-73632447-4	chr15	73632361	73632561	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7717.0	NM_001033219	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-34771766-2	chr14	34771666	34771866	+	873.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14|LTR|ERV1	-48370.0	NM_008166	14803.0	Mm.121569	NM_008166	ENSMUSG00000041078	Grid1	GluD1|GluRdelta1	glutamate receptor, ionotropic, delta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-37431525-4	chr6	37431396	37431596	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178661, intron 1 of 11)	(CAGAGA)n|Simple_repeat|Simple_repeat	10652.0	NM_178661	208647.0	Mm.169929	NM_178661	ENSMUSG00000038648	Creb3l2	BBF2H7|C530025K05Rik|SCIRR69	cAMP responsive element binding protein 3-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-78847278-4	chr7	78847163	78847363	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029585)	promoter-TSS (NM_029585)	-52.0	NM_029585	76375.0	Mm.250541	NM_029585	ENSMUSG00000030610	Det1	2610034H20Rik	de-etiolated homolog 1 (Arabidopsis)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-158466401-2	chr3	158466301	158466501	+	562.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081358, intron 1 of 27)	intron (NM_001081358, intron 1 of 27)	95820.0	NM_001291452	242274.0	Mm.132162	NM_001081358	ENSMUSG00000028176	Lrrc7	AK122498|densin|mKIAA1365	leucine rich repeat containing 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127391625-2	chr7	127391525	127391725	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_198011, exon 3 of 3)	exon (NM_198011, exon 3 of 3)	1996.0	NM_198011	101604.0	Mm.334241	NM_198011	ENSMUSG00000078580	E430018J23Rik	AI480612	RIKEN cDNA E430018J23 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-160591685-2	chr2	160591585	160591785	+	592.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54212.0	NM_009408	21969.0	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-49205635-4	chr13	49205543	49205743	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026738, intron 2 of 5)	MIRb|SINE|MIR	10383.0	NM_026738	68480.0	Mm.3336	NM_026738	ENSMUSG00000037960	Card19	1110007C09Rik|AI851695|Bincard	caspase recruitment domain family, member 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35135859-1	chr17	35135759	35135959	+	1000.0	f0_c57.idr	intron (NM_001252469, intron 1 of 23)	intron (NM_001252469, intron 1 of 23)	145.0	NM_001252469	224727.0	Mm.203962	NM_057171	ENSMUSG00000024392	Bag6	2410045D21Rik|AA408914|BAG-6|Bat3|D17H6S52E|G3|Scythe	BCL2-associated athanogene 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-103844519-3	chr14	103844435	103844635	+	684.377747	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007904)	promoter-TSS (NM_007904)	-59.0	NM_001136061	13618.0	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-72172837-4	chr5	72172728	72172928	+	978.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4639.0	NM_001356614	27784.0	Mm.44223	NM_178599	ENSMUSG00000029213	Commd8	C77770|D5Buc26e	COMM domain containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-17880230-2	chr18	17880130	17880330	+	931.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3A|LINE|L1	-299240.0	NR_045374	75162.0	Mm.60874	NR_045374		4930545E07Rik	-	RIKEN cDNA 4930545E07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-135283079-2	chr1	135282972	135283172	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_001159624, intron 1 of 9)	intron (NM_001159624, intron 1 of 9)	1012.0	NM_145417	215615.0	Mm.291048	NM_145417	ENSMUSG00000041926	Rnpep	-	arginyl aminopeptidase (aminopeptidase B)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-123965606-2	chr4	123965506	123965706	+	542.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48173.0	NM_017475	54170.0	Mm.220922	NM_017475	ENSMUSG00000028646	Rragc	AU041672|Gtr2|RAGC|TIB929|YGR163W	Ras-related GTP binding C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-40914936-1	chr14	40914836	40915036	+	661.0	f0_balb.idr	intron (NM_145928, intron 5 of 8)	intron (NM_145928, intron 5 of 8)	-21971.0	NM_177816	328381.0	Mm.235694	NM_177816	ENSMUSG00000037833	Sh2d4b	A430109M18Rik|D030001E08	SH2 domain containing 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-138973555-4	chr4	138973473	138973673	+	993.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029857, intron 1 of 16)	intron (NM_029857, intron 1 of 16)	668.0	NM_029857	77056.0	Mm.122336	NM_029857	ENSMUSG00000041143	Tmco4	4632413C14Rik|AI430825	transmembrane and coiled-coil domains 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152556204-3	chr1	152556096	152556296	+	872.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 5 of 17)	intron (NM_016846, intron 5 of 17)	69021.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-24514453-2	chr9	24514353	24514553	+	796.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11313.0	NM_172920	244745.0	Mm.38526	NM_172920	ENSMUSG00000043067	Dpy19l1	1100001I19Rik|6030402K12|AI225861|AW558481	dpy-19-like 1 (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-82746315-2	chr11	82746215	82746415	+	856.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009839, intron 5 of 13)	B3|SINE|B2	18006.0	NM_009839	12467.0	Mm.4126	NM_009839	ENSMUSG00000020698	Cct6b	CCT-zeta-2|CCTzeta-2|Cctz-2|TCP-1-zeta-2	chaperonin containing Tcp1, subunit 6b (zeta)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94116470-4	chr10	94116362	94116562	+	983.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053072, intron 8 of 20)	intron (NM_053072, intron 8 of 20)	-31469.0	NM_011629	22025.0	Mm.107483	NM_011629	ENSMUSG00000005897	Nr2c1	4831444H07Rik|80.3|Eenr|TR2|Tr2-11	nuclear receptor subfamily 2, group C, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-48895643-2	chr7	48895543	48895743	+	833.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14047.0	NM_001360812	108961.0	Mm.240566	NM_001013368	ENSMUSG00000046179	E2f8	4432406C08Rik|AA410048	E2F transcription factor 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-137665903-2	chr6	137665803	137666003	+	662.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16618.0	NM_007945	13860.0	Mm.235346	NM_007945	ENSMUSG00000015766	Eps8	AW261790	epidermal growth factor receptor pathway substrate 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-27449440-4	chr7	27449343	27449543	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144923, intron 1 of 4)	intron (NM_144923, intron 1 of 4)	1465.0	NM_144923	233016.0	Mm.24021	NM_144923	ENSMUSG00000040466	Blvrb	-	biliverdin reductase B (flavin reductase (NADPH))	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-95324798-2	chr13	95324698	95324898	+	575.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028106)	promoter-TSS (NM_028106)	-27.0	NM_028106	72114.0	Mm.3774	NM_028106	ENSMUSG00000041995	Zbed3	0610037K01Rik|2610005H11Rik|AU018975|AU024588	zinc finger, BED type containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-108578413-2	chr4	108578313	108578513	+	713.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172697, intron 1 of 9)	B1_Mm|SINE|Alu	923.0	NM_172697	230596.0	Mm.157534	NM_172697	ENSMUSG00000063800	Prpf38a	2410002M20Rik	PRP38 pre-mRNA processing factor 38 (yeast) domain containing A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-99884474-4	chr12	99884343	99884543	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028354)	promoter-TSS (NM_028354)	-72.0	NM_028354	104884.0	Mm.312323	NM_028354	ENSMUSG00000021177	Tdp1	2810481F14Rik|4921509N21Rik|AI838772|AW493413|E430034L06Rik|MLZ-501|SCAN1	tyrosyl-DNA phosphodiesterase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-129876758-4	chr6	129876644	129876844	+	826.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133203)	promoter-TSS (NM_133203)	-72.0	NM_133203	170733.0	Mm.155514	NM_133203	ENSMUSG00000014543	Klra17	Ly49q|Ly49q1	killer cell lectin-like receptor, subfamily A, member 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-118275403-4	chr7	118275308	118275508	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	31501.0	NR_027879	67745.0	Mm.483404	NM_183267	ENSMUSG00000055159	4930583K01Rik	-	RIKEN cDNA 4930583K01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-63586321-4	chr4	63586198	63586398	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001356354)	TTS (NM_001356354)	14466.0	NM_001354647	670833.0	Mm.32213	NM_001354647	ENSMUSG00000084782	Gm11213	-	predicted gene 11213	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-57705878-4	chr15	57705765	57705965	+	952.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199449, intron 1 of 3)	intron (NM_199449, intron 1 of 3)	11198.0	NM_199449	387609.0	Mm.36557	NM_199449	ENSMUSG00000071757	Zhx2	Afr-1|Afr1|Raf|mKIAA0854	zinc fingers and homeoboxes 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-44140645-4	chr16	44140528	44140728	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028108, intron 1 of 4)	intron (NM_028108, intron 1 of 4)	819.0	NM_028108	72117.0	Mm.278726	NM_028108	ENSMUSG00000022698	Naa50	2600005K24Rik|2810441M03Rik|AW112078|Mak3|Mak3p|Nat13|Nat5|San	N(alpha)-acetyltransferase 50, NatE catalytic subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-20890691-2	chr9	20890591	20890791	+	588.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_145610, exon 6 of 11)	exon (NM_145610, exon 6 of 11)	2516.0	NM_145610	235036.0	Mm.2930	NM_145610	ENSMUSG00000004100	Ppan	A230087P06Rik|SSF1	peter pan homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-12117779-4	chr15	12117688	12117888	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011767)	promoter-TSS (NM_011767)	-63.0	NM_011767	22763.0	Mm.273496	NM_011767	ENSMUSG00000022201	Zfr	C920030H05Rik	zinc finger RNA binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-6487800-2	chr3	6487702	6487902	+	795.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus4|LINE|L1	132641.0	NM_027048	69347.0	Mm.45822	NM_027048	ENSMUSG00000069118	1700008P02Rik	-	RIKEN cDNA 1700008P02 gene	protein-coding	-0.298374134588653	-0.284948102479794	0.276348827513729	-0.292744479040632	-0.29753704572092	-0.283955217960739	0.287329730138552	-0.1260710101199	0.337868207562274	0.890749910580453	1
Merged-chr5-9015557-3	chr5	9015447	9015647	+	666.266663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-18401.0	NM_023733	74114.0	Mm.28197	NM_023733	ENSMUSG00000003623	Crot	1200003H03Rik	carnitine O-octanoyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-44100843-2	chr5	44100743	44100943	+	800.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163577, intron 1 of 27)	CpG	893.0	NM_008935	19126.0	Mm.6250	NM_008935	ENSMUSG00000029086	Prom1	4932416E19Rik|AC133|CD133|Prom|Prom-1|Proml1	prominin 1	protein-coding	1.56757753610455	1.74965594268561	1.42928769465023	1.64674557635718	1.34972998672678	1.7622421940268	1.43853858697882	1.53632027943331	-0.270790384034161	0.802444446817859	0.998431161219273
Merged-chr11-118227151-2	chr11	118227082	118227282	+	885.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	-14440.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-62215715-2	chr10	62215615	62215815	+	955.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_197996, intron 1 of 7)	intron (NM_197996, intron 1 of 7)	15503.0	NM_197996	70423.0	Mm.416781	NM_197996	ENSMUSG00000037031	Tspan15	1110036D12Rik|2700063A19Rik|AW048364|Tm4sf15	tetraspanin 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-120055242-2	chr4	120055142	120055342	+	613.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010657, intron 2 of 8)	intron (NM_010657, intron 2 of 8)	-105964.0	NM_007902	13615.0	Mm.284855	NM_007902	ENSMUSG00000028635	Edn2	ET-2|PPET2|VIC	endothelin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-90283027-4	chr16	90282876	90283076	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346799, intron 1 of 19)	intron (NM_001346799, intron 1 of 19)	1510.0	NM_001346799	224432.0	Mm.439811	NM_178923	ENSMUSG00000022983	Scaf4	AA517739|Sfrs15|Sra4|Srsf15	SR-related CTD-associated factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-75596358-4	chr12	75596276	75596476	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_012024)	promoter-TSS (NM_012024)	-176.0	NM_012024	26932.0	Mm.259626	NM_012024	ENSMUSG00000021051	Ppp2r5e	4633401M22Rik|AI449017|B56beta	protein phosphatase 2, regulatory subunit B', epsilon	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-67491025-4	chr18	67490946	67491146	+	951.94165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_176832, exon 14 of 14)	3' UTR (NM_176832, exon 14 of 14)	26197.0	NM_144867	225655.0	Mm.221420	NM_144867	ENSMUSG00000024530	Prelid3a	A230074A19Rik|BC019561|Slmo1	PRELI domain containing 3A	protein-coding	-1.56355737717652	-1.81244775989375	-1.82128546162293	-1.82854501295842	-1.83962066705452	-1.81053259306168	-1.81928479966835	-1.82724555674025	-1.28500227969968	0.715751224811686	1
Merged-chr7-39517901-4	chr7	39517756	39517956	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001004139)	promoter-TSS (NM_001004139)	90.0	NM_001004139	70227.0	Mm.333800	NM_001004139	ENSMUSG00000068959	Zfp619	3000002G13Rik	zinc finger protein 619	protein-coding	6.65151425940432	6.78035032029314	7.28756428392574	6.13348689438432	7.24324601763151	6.9397072699415	7.59481653971546	5.90506110217145	0.289803314630228	0.502576754771892	0.939434343127309
Merged-chr18-4361315-2	chr18	4361215	4361415	+	925.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_040328, intron 2 of 3)	RMER6B|LTR|ERVK	7768.0	NR_040328	73915.0	Mm.482777	NR_040328		4833419F23Rik	-	RIKEN cDNA 4833419F23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-29474052-4	chr6	29473950	29474150	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001145360)	TTS (NM_001145360)	2613.0	NM_001145360	668210.0	Mm.420607	NM_001145360	ENSMUSG00000090685	Gm9047	EG668210	predicted gene 9047	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-146079432-4	chr6	146079359	146079559	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	145337.0	NM_010656	16651.0	Mm.49689	NM_010656	ENSMUSG00000030255	Sspn	Krag	sarcospan	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76550454-2	chr15	76550354	76550554	+	965.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	11511.0	NM_029643	52710.0	Mm.28597	NM_029643	ENSMUSG00000022560	Slc52a2	2010003P03Rik|D15Ertd747e|GPCR42|Gpr172b|PAR2|mRFT1	solute carrier protein 52, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-54622655-3	chr13	54622516	54622716	+	646.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178397, intron 1 of 10)	intron (NM_178397, intron 1 of 10)	832.0	NM_178397	76577.0	Mm.194459	NM_178397	ENSMUSG00000025873	Faf2	2210404D11Rik|AI462440|Ubxd8|mKIAA0887	Fas associated factor family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-33155865-2	chr12	33155765	33155965	+	699.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_028139, intron 2 of 3)	intron (NM_028139, intron 2 of 3)	8179.0	NM_028139	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-146674514-2	chr5	146674414	146674614	+	656.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-89275.0	NM_001359057	14738.0	Mm.153539	NM_008151	ENSMUSG00000041468	Gpr12	Gpcr01|Gpcr12|Gpcr20|Gpcr21	G-protein coupled receptor 12	protein-coding	-0.899922854013325	-0.887109844254568	-0.894192548302204	-0.896351257249948	-0.524096507499593	-0.884464025606667	-0.437305640795677	-0.895974523573804	2.97790224550765	0.327267979253912	1
Merged-chr12-25141879-2	chr12	25141779	25141979	+	642.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12705.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-31738191-2	chr11	31738091	31738291	+	978.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66329.0	NM_001024919	69556.0	Mm.34183	NM_001024919	ENSMUSG00000044502	Bod1	2310022M17Rik|BOD2.1|Fam44b	biorientation of chromosomes in cell division 1	protein-coding	-1.50874880059862	-1.47511716453926	-1.4852876488768	-1.49364198752927	-1.50638792193216	-0.992828729615453	-1.48298527415345	-1.4921465649048	2.3185461113984	0.50391666537493	1
Merged-chr8-70503196-3	chr8	70503109	70503309	+	788.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018827, intron 6 of 8)	intron (NM_018827, intron 6 of 8)	3217.0	NR_151646	66462.0	Mm.28242	NM_025577	ENSMUSG00000058833	Rex1bd	2810428I15Rik	required for excision 1-B domain containing	protein-coding	0.749386871650879	0.293691774956837	1.12323753067361	0.272131626344497	0.258377177723153	0.296370457899754	1.67119259338817	0.273805224788385	0.630909115381048	0.738640557755196	0.998431161219273
Merged-chr8-13678473-3	chr8	13678390	13678590	+	868.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009025)	promoter-TSS (NM_009025)	-903.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123897499-4	chr5	123897403	123897603	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9772.0	NM_026603	68184.0	Mm.28549	NM_026603	ENSMUSG00000023106	Denr	1500003K04Rik	density-regulated protein	protein-coding	4.1278164791722	3.90727776125424	6.0716997361024	5.29267481080771	4.57824659901815	4.27050613277123	5.34300819346647	4.70936031306418	-0.418899744501902	0.372354948146523	0.865109408625856
Merged-chr17-34837683-4	chr17	34837562	34837762	+	974.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019442)	promoter-TSS (NM_019442)	643.0	NM_001163770	112403.0	Mm.275309	NM_033613	ENSMUSG00000040482	Dxo	Dom3z|NG6	decapping exoribonuclease	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-14273108-3	chr9	14273004	14273204	+	755.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-3197.0	NM_030261	75747.0	Mm.325126	NM_030261	ENSMUSG00000032009	Sesn3	5630400E15Rik|BC003348|SEST3	sestrin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-89261953-4	chr9	89261848	89262048	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	50564.0	NM_001359993	107885.0	Mm.486274	NM_026829	ENSMUSG00000066442	Mthfs	1110034I12Rik|2310020H23Rik|AI119695	5, 10-methenyltetrahydrofolate synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-47261321-4	chr4	47261205	47261405	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009928, intron 9 of 39)	intron (NM_009928, intron 9 of 39)	53293.0	NM_009928	12819.0	Mm.233547	NM_009928	ENSMUSG00000028339	Col15a1	-	collagen, type XV, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106414360-3	chr11	106414270	106414470	+	918.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_023913, exon 11 of 22)	exon (NM_023913, exon 11 of 22)	-31589.0	NM_010494	15896.0	Mm.394	NM_010494	ENSMUSG00000001029	Icam2	CD102|Icam-2|Ly-60	intercellular adhesion molecule 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-39838067-4	chr5	39837972	39838172	+	978.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-193441.0	NM_010474	15476.0	Mm.12559	NM_010474	ENSMUSG00000051022	Hs3st1	3-Ost|D5Wsu110e|Hsg3ost	heparan sulfate (glucosamine) 3-O-sulfotransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-43475972-2	chr15	43475872	43476072	+	575.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_046064, intron 1 of 2)	intron (NR_046064, intron 1 of 2)	1064.0	NR_046064	100038728.0	Mm.244168	NR_046064	ENSMUSG00000072592	Gm10373	-	predicted gene 10373	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-82862470-2	chr10	82862370	82862570	+	756.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001042513, intron 2 of 14)	intron (NM_001042513, intron 2 of 14)	2129.0	NM_001042514	50493.0	Mm.210155	NM_015762	ENSMUSG00000020250	Txnrd1	TR|TR1|TrxR1	thioredoxin reductase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-136908612-4	chr5	136908510	136908710	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026073, intron 1 of 4)	intron (NM_026073, intron 1 of 4)	460.0	NM_026073	67286.0	Mm.41779	NM_026073	ENSMUSG00000007987	Ift22	3110017O03Rik|AI835745|AI847427|Rabl5	intraflagellar transport 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-40706775-2	chr19	40706675	40706875	+	627.708374	f1_balb.idr|f1_c57bl6.idr	intron (NM_009848, intron 1 of 9)	intron (NM_009848, intron 1 of 9)	47005.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-50027643-2	chr11	50027543	50027743	+	767.200012	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290750, intron 1 of 7)	intron (NM_001290750, intron 1 of 7)	2312.0	NM_001290750	59044.0	Mm.359004	NM_021540	ENSMUSG00000020376	Rnf130	2510042A13Rik|G1RZFP|G1rp|GOLIATH|GP	ring finger protein 130	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-173398780-3	chr1	173398684	173398884	+	707.333313	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21820.0	NM_001013779	383619.0	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	3.58785293254603	2.98167912308274	4.08026879478448	2.7913986163614	3.81716749904363	3.34907986264916	3.13473916890221	2.35701061957374	-0.303674306600123	0.635937676549774	0.982417279970648
Merged-chr15-95804391-4	chr15	95804280	95804480	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 1 of 19)	intron (NM_175344, intron 1 of 19)	13537.0	NM_001253813	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-76760120-1	chr13	76760020	76760220	+	652.0	f1_balb.idr	intron (NM_030174, intron 8 of 20)	intron (NM_030174, intron 8 of 20)	375159.0	NM_030174	78771.0	Mm.316249	NM_030174	ENSMUSG00000021596	Mctp1	2810465F10Rik	multiple C2 domains, transmembrane 1	protein-coding	-0.283015241440405	-0.270754347129046	-0.274786941294021	-0.277887743275903	0.0820870088528058	0.209828411088693	-0.273898839116271	0.1336165662498	3.63664353953009	0.129561124686124	1
Merged-chr17-35470272-2	chr17	35470172	35470372	+	826.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_010391, intron 1 of 6)	CpG	183.0	NM_010391	15007.0	Mm.88795	NM_010391	ENSMUSG00000067235	H2-Q10	H-2Q10|Q10|Qa10	histocompatibility 2, Q region locus 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80180656-4	chr7	80180549	80180749	+	934.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6192.0	NM_013659	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	2.9545893341103	2.48634634520827	1.47014544595115	2.65689979055879	2.54314614607613	2.20095558841704	2.54394938646278	2.8427389412052	0.0879931371210734	0.916556476914392	0.998431161219273
Merged-chr8-8499532-3	chr8	8499436	8499636	+	680.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	161237.0	NM_010111	13642.0	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75511799-1	chr11	75511699	75511899	+	544.0	f1_c57bl6.idr	exon (NM_001029938, exon 6 of 8)	exon (NM_001029938, exon 6 of 8)	1705.0	NM_001029938	280408.0	Mm.41416	NM_001029938	ENSMUSG00000038195	Rilp	AI835553|Gm857	Rab interacting lysosomal protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166155611-4	chr2	166155498	166155698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028072)	promoter-TSS (NM_028072)	85.0	NM_001252579	72043.0	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-104440692-4	chr11	104440586	104440786	+	809.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359634, intron 2 of 14)	intron (NM_001359634, intron 2 of 14)	1605.0	NM_001081045	76719.0	Mm.136418	NM_001081045	ENSMUSG00000018412	Kansl1	1700081L11Rik|9430041J06Rik|mKIAA1267	KAT8 regulatory NSL complex subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-16457308-3	chr14	16457198	16457398	+	952.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289760, intron 5 of 9)	intron (NM_001289760, intron 5 of 9)	92092.0	NM_009409	21974.0	Mm.130362	NM_009409	ENSMUSG00000017485	Top2b	D230016L12Rik|Top-2	topoisomerase (DNA) II beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-149182914-2	chr5	149182814	149183014	+	912.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015478)	promoter-TSS (NR_015478)	-878.0	NR_015478	433966.0	Mm.207047	NR_015478	ENSMUSG00000097191	5730422E09Rik	-	RIKEN cDNA 5730422E09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-108799953-2	chr3	108799853	108800053	+	577.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011504, intron 15 of 18)	intron (NM_011504, intron 15 of 18)	40549.0	NM_011504	20912.0	Mm.316894	NM_011504	ENSMUSG00000027882	Stxbp3	Munc-18c|Stxbp3a|Sxtbp3|Unc18-3	syntaxin binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-26201758-1	chr1	26201658	26201858	+	607.0	f1_balb.idr	Intergenic	RMER1A|Other|Other	-372051.0	NM_175642	210933.0	Mm.336569	NM_175642	ENSMUSG00000033569	Adgrb3	A830096D10Rik|Bai3	adhesion G protein-coupled receptor B3	protein-coding	-1.56355737717652	-1.81244775989375	-1.82128546162293	-1.82854501295842	-1.83962066705452	-1.81053259306168	-1.81928479966835	-1.82724555674025	-1.28500227969968	0.715751224811686	1
Merged-chr5-125352048-4	chr5	125351966	125352166	+	991.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10972.0	NM_001205083	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90488429-3	chr2	90488332	90488532	+	924.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	B3|SINE|B2	-9258.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-105483145-4	chr14	105483044	105483244	+	858.4458619999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15644.0	NR_045921	74864.0	Mm.159344	NR_045921	ENSMUSG00000022116	4930449E01Rik	-	RIKEN cDNA 4930449E01 gene	ncRNA	3.07678663447216	2.90274225378838	2.68725034134326	1.51702553380146	3.39731471467027	3.39210713404443	2.70878980942817	2.62347919952243	0.738303622728803	0.331148781757249	0.83197671091297
Merged-chr16-4268106-4	chr16	4267992	4268192	+	849.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	38863.0	NR_003628	436332.0	Mm.478141	NM_001013830	ENSMUSG00000089645	Gm5766	EG436332	ribosomal protein L7a pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135981115-3	chr4	135980986	135981186	+	863.4722289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025411, intron 3 of 5)	L1MA5|LINE|L1	6158.0	NM_025411	66193.0	Mm.29131	NM_025411	ENSMUSG00000028669	Pithd1	1110049F12Rik|AA408179|Trp26	PITH (C-terminal proteasome-interacting domain of thioredoxin-like) domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-126022644-2	chr4	126022544	126022744	+	791.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-2015.0	NR_045561	12986.0	Mm.271701	NM_007782	ENSMUSG00000028859	Csf3r	Cd114|Csfgr|G-CSF-R|G-CSFR	colony stimulating factor 3 receptor (granulocyte)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-110535415-3	chr9	110535372	110535572	+	763.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081340, intron 1 of 20)	intron (NM_001081340, intron 1 of 20)	2875.0	NM_001081340	235626.0	Mm.288949	NM_001081340	ENSMUSG00000044791	Setd2	4921524K10Rik|BC031601|KMT3A	SET domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81027806-4	chr15	81027673	81027873	+	882.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001082536, intron 3 of 13)	intron (NM_001082536, intron 3 of 13)	50008.0	NM_134091	105835.0	Mm.274943	NM_134091	ENSMUSG00000042303	Sgsm3	1810012I01Rik|AI428557|BB175482|Cip85|R75178|RUSC3|Rutbc3	small G protein signaling modulator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152768257-4	chr1	152768147	152768347	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026369, intron 1 of 3)	intron (NM_026369, intron 1 of 3)	1705.0	NM_026369	67771.0	Mm.288974	NM_026369	ENSMUSG00000008475	Arpc5	5830443F10Rik|p16-Arc	actin related protein 2/3 complex, subunit 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-74820556-1	chr5	74820456	74820656	+	779.0	f0_balb.idr	Intergenic	Intergenic	-117653.0	NM_001159577	16924.0	Mm.440403	NM_010727	ENSMUSG00000029228	Lnx1	Lnx	ligand of numb-protein X 1	protein-coding	0.471104785436755	0.51271988947334	0.499420811659591	0.488945151631956	1.604322379428	1.13123724229413	1.63405396322917	0.705260096977732	4.88965981003822	0.00316948076615576	0.0471414424367812
Merged-chr13-5920573-3	chr13	5920464	5920664	+	863.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	59075.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106999059-2	chr11	106998959	106999159	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010655, intron 1 of 10)	intron (NM_010655, intron 1 of 10)	466.0	NM_010655	16647.0	Mm.12508	NM_010655	ENSMUSG00000018362	Kpna2	2410044B12Rik|IPOA1|PTAC58|Rch1	karyopherin (importin) alpha 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-4337260-3	chr18	4337157	4337357	+	736.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007746, intron 5 of 7)	intron (NM_007746, intron 5 of 7)	15696.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-9826445-3	chr13	9826323	9826523	+	809.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-61102.0	NM_144516	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-153876588-2	chr4	153876488	153876688	+	823.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	73888.0	NR_040670	407793.0	Mm.260950	NR_040670		BC039966	-	cDNA sequence BC039966	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44230277-1	chr9	44230177	44230377	+	1000.0	f1_c57bl6.idr	intron (NM_007619, intron 1 of 15)	intron (NM_007619, intron 1 of 15)	3769.0	NM_007619	12402.0	Mm.266871	NM_007619	ENSMUSG00000034342	Cbl	4732447J05Rik|Cbl-2|c-Cbl|cbl	Casitas B-lineage lymphoma	protein-coding	1.39798642687413	1.34942179730502	1.63252164530981	0.785927401798816	1.31310130022656	1.0286462807221	1.31097977374668	0.787618713448212	-0.82570060877506	0.548825146725021	0.958300782537131
Merged-chr19-56703241-4	chr19	56703136	56703336	+	977.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19136.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-94431001-2	chr2	94430901	94431101	+	824.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007466, intron 1 of 13)	intron (NM_007466, intron 1 of 13)	7185.0	NM_007466	11800.0	Mm.181824	NM_007466	ENSMUSG00000027193	Api5	AAC-11|AI196452|API-5	apoptosis inhibitor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-73067640-4	chr17	73067543	73067743	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40342.0	NM_001177968	225010.0	Mm.329194	NM_001081071	ENSMUSG00000054469	Lclat1	AI181996|Agpat8|Alcat1|Gm91|Lycat	lysocardiolipin acyltransferase 1	protein-coding	3.27774463940818	3.10757043508489	3.92337331581507	3.52133466567895	3.66655876773405	3.00612917256794	3.41769158080351	2.17234924772157	-0.489586122750492	0.432335065811635	0.904679012727573
Merged-chr15-76542899-2	chr15	76542799	76542999	+	555.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_029643)	TTS (NM_029643)	3956.0	NM_029643	52710.0	Mm.28597	NM_029643	ENSMUSG00000022560	Slc52a2	2010003P03Rik|D15Ertd747e|GPCR42|Gpr172b|PAR2|mRFT1	solute carrier protein 52, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-88993277-1	chr11	88993177	88993377	+	600.0	f1_c57bl6.idr	Intergenic	B3|SINE|B2	-6126.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	2.09970452060173	2.76260025244554	1.25237748906377	3.40973958945178	1.4229879965242	2.88701239045015	1.26253909593128	3.08466179169671	-0.364594180758414	0.725386008787473	0.998431161219273
Merged-chr15-100616578-2	chr15	100616463	100616663	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011873, intron 1 of 3)	intron (NM_011873, intron 1 of 3)	901.0	NM_011873	23994.0	Mm.486175	NM_011873	ENSMUSG00000000346	Dazap2	AI314727|Brbp|Gcap28|Prtb|gt6-12|mKIAA0058	DAZ associated protein 2	protein-coding	-0.66395613586854	-0.650132319796144	-0.654627851381934	-0.658118311139364	-0.663084242743729	-0.426405497967606	0.292494002979729	-0.657507135854676	3.59702950230202	0.184711078562206	1
Merged-chr3-65930807-2	chr3	65930731	65930931	+	891.0	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	27418.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	0.741327293944111	0.485172912434169	1.27006550297547	0.470017480846397	0.864671224131871	0.487089445408761	1.08233685748467	0.795106954360252	0.151902773798571	0.927089526864622	1
Merged-chr11-44380853-4	chr11	44380644	44380844	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-19319.0	NM_001303244	16160.0	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	3.57570640502886	3.2480917839087	2.60099116111424	1.77434886025302	1.21255085473375	2.45904474807443	2.50309321704987	1.55572905726091	-1.81984795180107	0.0471876234743425	0.314881594240913
Merged-chr5-43876436-3	chr5	43876335	43876535	+	889.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007646, intron 1 of 7)	MTE2b|LTR|ERVL-MaLR	7626.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-29305816-2	chr7	29305716	29305916	+	611.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013874, intron 1 of 11)	intron (NM_013874, intron 1 of 11)	1811.0	NM_013874	29861.0	Mm.101885	NM_013874	ENSMUSG00000030584	Dpf1	Neud4	D4, zinc and double PHD fingers family 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-64926414-2	chr1	64926314	64926514	+	713.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039493, intron 2 of 7)	B4A|SINE|B4	30410.0	NM_001039493	241075.0	Mm.239534	NM_175509	ENSMUSG00000051344	Plekhm3	9430067K14Rik|A230102O09Rik|AI449570|DAPR|Plekhm1l	pleckstrin homology domain containing, family M, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-90916278-4	chr16	90916149	90916349	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18600.0	NM_026502	68001.0	Mm.45374	NM_026502	ENSMUSG00000022972	1110004E09Rik	-	RIKEN cDNA 1110004E09 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-151988931-4	chr4	151988801	151989001	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145929)	promoter-TSS (NM_001145929)	85.0	NM_175152	69876.0	Mm.226820	NM_175152	ENSMUSG00000039759	Thap3	2010013E08Rik|2210418H06Rik	THAP domain containing, apoptosis associated protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-26607377-2	chr11	26607277	26607477	+	753.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13457.0	NM_001252447	69922.0	Mm.285351	NM_027260	ENSMUSG00000064090	Vrk2	2810003O05Rik|AI447698	vaccinia related kinase 2	protein-coding	1.91100720348083	1.67839565583209	2.08329559849547	1.57684096666191	1.01985564375901	1.08217160344857	2.00229829836742	1.71598929958902	-0.907649330292112	0.43986317985311	0.909249686890578
Merged-chr10-70214503-4	chr10	70214334	70214534	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304739, intron 1 of 2)	intron (NM_001304739, intron 1 of 2)	9770.0	NM_001304739	69563.0	Mm.64672	NM_001304739	ENSMUSG00000019933	Mrln	2310015B20Rik|Linc-RAM|Mln	myoregulin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-50130601-4	chr18	50130515	50130715	+	826.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008292, intron 2 of 23)	intron (NM_008292, intron 2 of 23)	2414.0	NM_008292	15488.0	Mm.277857	NM_008292	ENSMUSG00000024507	Hsd17b4	17-beta-HSD|17[b]-HSD|DBP|MFE-2|MFP2|MPF-2|Mfp-2|perMFE-2	hydroxysteroid (17-beta) dehydrogenase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3808440-4	chr12	3808413	3808613	+	858.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271753, intron 1 of 22)	intron (NM_001271753, intron 1 of 22)	1353.0	NM_001271753	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-35183409-3	chr2	35183303	35183503	+	943.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026697, exon 7 of 8)	exon (NM_026697, exon 7 of 8)	17717.0	NM_026697	68365.0	Mm.198264	NM_026697	ENSMUSG00000026878	Rab14	0610030G24Rik|2810475J17Rik|A830021G03Rik|AI314285|AI649155|D030017L14Rik	RAB14, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-148899562-1	chr3	148899462	148899662	+	888.0	f0_balb.idr	intron (NM_001081298, intron 1 of 23)	intron (NM_001081298, intron 1 of 23)	55073.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-36276858-6	chr2	36276792	36276992	+	757.972229	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46466.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-22811013-4	chr2	22810912	22811112	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019456, intron 1 of 13)	intron (NM_019456, intron 1 of 13)	36685.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-121599502-2	chr14	121599405	121599605	+	751.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347596, intron 34 of 52)	intron (NM_001347596, intron 34 of 52)	-94251.0	NM_053079	56643.0	Mm.155618	NM_053079	ENSMUSG00000025557	Slc15a1	D630032F02|PECT1|PEPT1	solute carrier family 15 (oligopeptide transporter), member 1	protein-coding	-0.682131627535451	-0.671319860668475	-0.674863146230903	-0.677596166135016	-0.291804845436015	-0.0356213560756732	-0.674081735836913	-0.677118762961166	3.33454605312832	0.238118206216222	1
Merged-chr16-95702488-4	chr16	95702388	95702588	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011809)	promoter-TSS (NM_011809)	81.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100826790-4	chr11	100826685	100826885	+	671.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113563, intron 1 of 18)	intron (NM_001113563, intron 1 of 18)	-4215.0	NM_011489	20851.0	Mm.34064	NM_011489	ENSMUSG00000020919	Stat5b	-	signal transducer and activator of transcription 5B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-75157132-6	chr5	75156994	75157194	+	907.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083316, intron 1 of 22)	intron (NM_001083316, intron 1 of 22)	928.0	NM_001083316	18595.0	Mm.221403	NM_011058	ENSMUSG00000029231	Pdgfra	AI115593|CD140a|Pdgfr-2	platelet derived growth factor receptor, alpha polypeptide	protein-coding	-0.275637590810032	-0.260315195993813	-0.265320411202973	0.385663988764387	0.480740218805693	-0.2591888348953	-0.264215284074135	-0.268514758087626	0.280841261683545	0.913283311096362	1
Merged-chr11-7344774-1	chr11	7344674	7344874	+	651.0	f1_balb.idr	Intergenic	L1_Mus1|LINE|L1	-130851.0	NM_008343	16009.0	Mm.29254	NM_008343	ENSMUSG00000020427	Igfbp3	AI649005|IGFBP-3|IGgfbp3	insulin-like growth factor binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126847997-2	chr7	126847897	126848097	+	762.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010069, exon 1 of 11)	5' UTR (NM_010069, exon 1 of 11)	444.0	NM_010069	13446.0	Mm.266301	NM_010069	ENSMUSG00000052301	Doc2a	-	double C2, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-50361959-4	chr15	50361849	50362049	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	527100.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80347011-2	chr7	80346911	80347111	+	576.25	f1_balb.idr|f1_c57bl6.idr	TTS (NM_026812)	TTS (NM_026812)	3874.0	NM_026812	68695.0	Mm.21171	NM_026812	ENSMUSG00000030532	Hddc3	1110033O09Rik|C86475|MESH1	HD domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167958992-4	chr2	167958896	167959096	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011201, intron 1 of 8)	intron (NM_011201, intron 1 of 8)	26669.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44480316-4	chr9	44480191	44480391	+	993.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2534.0	NM_001357490	80288.0	Mm.370270	NM_030256	ENSMUSG00000063382	Bcl9l	B9L|BC003321|BCL9-2|DLNB11	B cell CLL/lymphoma 9-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28705959-2	chr17	28705859	28706059	+	926.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001168514, intron 2 of 12)	B3|SINE|B2	13391.0	NM_001357724	26416.0	Mm.311337	NM_011951	ENSMUSG00000053436	Mapk14	CSBP2|Crk1|Csbp1|Mxi2|PRKM14|PRKM15|p38|p38-alpha|p38MAPK|p38a|p38alpha	mitogen-activated protein kinase 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-76486318-1	chr5	76486218	76486418	+	689.0	f0_balb.idr	intron (NR_033501, intron 1 of 2)	intron (NR_033501, intron 1 of 2)	2241.0	NR_033501	639545.0	Mm.478255	NR_033501	ENSMUSG00000091204	Gm7271	EG639545	predicted gene 7271	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-155566791-2	chr4	155566691	155566891	+	561.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355599, intron 1 of 10)	intron (NM_001355599, intron 1 of 10)	2976.0	NM_001355599	192185.0	Mm.28347	NM_138671	ENSMUSG00000029063	Nadk	4432404C02Rik|BC004012	NAD kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-43091881-4	chr1	43091774	43091974	+	805.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013025, intron 2 of 12)	intron (NM_001013025, intron 2 of 12)	612.0	NM_001357299	73122.0	Mm.246069	NM_001013025	ENSMUSG00000070939	Tgfbrap1	3110018K12Rik|AU024090|AU042859|AW742551|Trap1	transforming growth factor, beta receptor associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-38367425-4	chr18	38367316	38367516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28423.0	NM_011937	26384.0	Mm.22374	NM_011937	ENSMUSG00000052102	Gnpda1	GNPDA|Gnp1|Gnpi|oscillin	glucosamine-6-phosphate deaminase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120098818-4	chr11	120098718	120098918	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001110242)	promoter-TSS (NM_001110242)	-87.0	NM_183137	78777.0	Mm.23672	NM_183137	ENSMUSG00000025377	Tepsin	2410002I01Rik|Enthd2	TEPSIN, adaptor related protein complex 4 accessory protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-157007055-4	chr2	157006964	157007164	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025853)	promoter-TSS (NM_025853)	11.0	NM_025853	66934.0	Mm.25410	NM_025853	ENSMUSG00000027635	Dsn1	1700022L09Rik|AW552447	DSN1 homolog, MIS12 kinetochore complex component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-57462209-3	chr17	57462003	57462203	+	649.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355722, intron 18 of 22)	MTC|LTR|ERVL-MaLR	83211.0	NM_001104591	224916.0	Mm.469889	NM_001104591	ENSMUSG00000090655	Vmn2r120	EG224916	vomeronasal 2, receptor 120	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-102812975-4	chr2	102812884	102813084	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001177785, exon 16 of 16)	3' UTR (NM_001177785, exon 16 of 16)	-66224.0	NR_153853	102637542.0	Mm.371582	NR_153852		Gm13872	-	predicted gene 13872	ncRNA	1.52716495859665	1.04732889822461	1.33523297926756	1.29463863338611	1.2354229995722	0.826847063310828	1.87246972093583	0.801095489877886	-0.119624431384618	0.929686360226309	0.998431161219273
Merged-chr2-91650617-2	chr2	91650517	91650717	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033451)	promoter-TSS (NM_001033451)	499.0	NR_027371	228359.0	Mm.22413	NM_146124	ENSMUSG00000027247	Arhgap1	B230365D05Rik|C76222|Cdc42GAP|p50rhoGAP	Rho GTPase activating protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-63113089-4	chr1	63112988	63113188	+	828.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114609, intron 1 of 11)	intron (NM_001114609, intron 1 of 11)	1179.0	NM_001081436	227195.0	Mm.74718	NM_001081436	ENSMUSG00000040865	Ino80d	7330405I11|A430093A21Rik|BC010584	INO80 complex subunit D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-4493040-4	chr7	4492964	4493164	+	964.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029834, intron 3 of 21)	intron (NM_029834, intron 3 of 21)	8616.0	NM_029834	232807.0	Mm.360391	NM_029834	ENSMUSG00000019254	Ppp1r12c	2410197A17Rik|AI839747|B430101M08|Mbs85	protein phosphatase 1, regulatory (inhibitor) subunit 12C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-130254458-4	chr5	130254363	130254563	+	929.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023248, intron 1 of 4)	intron (NM_023248, intron 1 of 4)	1067.0	NM_023248	66711.0	Mm.280484	NM_023248	ENSMUSG00000025337	Sbds	4733401P19Rik|AI836084|CGI-97|SDS	SBDS ribosome maturation factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-132355944-4	chr1	132355824	132356024	+	966.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001311108)	TTS (NM_001311108)	12024.0	NM_001311108	68875.0	Mm.273785	NM_178874	ENSMUSG00000042066	Tmcc2	1110063G11Rik	transmembrane and coiled-coil domains 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98754890-4	chr11	98754801	98755001	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178060, intron 2 of 8)	intron (NM_178060, intron 2 of 8)	13116.0	NM_001313983	21833.0	Mm.265917	NM_178060	ENSMUSG00000058756	Thra	6430529J03Rik|AW259572|Erba|Nr1a1|Rvr|T3R[a]|T3Ralpha|Thra1|Thra2|c-erbA-1|c-erbA-alpha|c-erbAalpha	thyroid hormone receptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-63568124-4	chr4	63568037	63568237	+	953.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144905, intron 4 of 9)	MIRb|SINE|MIR	7910.0	NM_144905	230279.0	Mm.41523	NM_144905	ENSMUSG00000045917	Tmem268	6330416G13Rik|AW492431|bM230C2.2	transmembrane protein 268	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-22808622-4	chr8	22808518	22808718	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2964.0	NM_001122820	64933.0	Mm.390023	NM_029505	ENSMUSG00000031539	Ap3m2	5830445E16Rik|AP-3B	adaptor-related protein complex 3, mu 2 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21366508-5	chr9	21366305	21366505	+	723.200012	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1466.0	NM_001042708	16201.0	Mm.440026	NM_010561	ENSMUSG00000032178	Ilf3	MBII-26|MPHOSPH4|NF90|NFAR	interleukin enhancer binding factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122906613-4	chr8	122906545	122906745	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_037865, intron 4 of 13)	intron (NR_037865, intron 4 of 13)	58271.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-84576503-4	chr10	84576285	84576485	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146008)	promoter-TSS (NM_146008)	-562.0	NM_146008	216198.0	Mm.296142	NM_146008	ENSMUSG00000020034	Tcp11l2	E430026E19Rik	t-complex 11 (mouse) like 2	protein-coding	4.20297177284828	3.44364877896731	4.47806450845515	3.81954164321266	4.27633074969785	3.22266659733876	3.73084869787277	4.47032260512907	-0.0345014977674471	0.944384642818122	0.998431161219273
Merged-chr17-64719670-2	chr17	64719570	64719770	+	897.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008549, intron 16 of 21)	intron (NM_008549, intron 16 of 21)	-47441.0	NR_105051	101202683.0	Mm.393309	NR_105051		Dreh	-	down-regulated in hepatocellular carcinoma	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101971005-2	chr11	101970905	101971105	+	614.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_028207)	TTS (NM_028207)	-3990.0	NM_024449	74499.0	Mm.265602	NM_024449	ENSMUSG00000001494	Sost	5430411E23Rik	sclerostin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-66480289-1	chr18	66480189	66480389	+	557.0	f1_c57bl6.idr	Intergenic	B3|SINE|B2	21685.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-103363322-4	chr14	103363232	103363432	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16532.0	NM_207215	105689.0	Mm.6478	NM_207215	ENSMUSG00000033004	Mycbp2	AU023734|AW107953|AW546647|C130061D10Rik|Pam|Phr1|R75243	MYC binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-44219266-4	chr10	44219161	44219361	+	825.145813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_001582, exon 7 of 7)	non-coding (NR_001582, exon 7 of 7)	3836.0	NR_027506	70365.0	Mm.87073	NR_001582	ENSMUSG00000091358	Speer5-ps1	1700007C10Rik|SPEER-5|Speer5-ps	spermatogenesis associated glutamate (E)-rich protein 5, pseudogene 1	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-143518355-4	chr5	143518258	143518458	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347530, intron 1 of 6)	intron (NM_001347530, intron 1 of 6)	9635.0	NM_009007	19353.0	Mm.292510	NM_009007	ENSMUSG00000001847	Rac1	AL023026|D5Ertd559e	Rac family small GTPase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-72225094-3	chr11	72224992	72225192	+	742.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9500.0	NM_026068	67279.0	Mm.159496	NM_026068	ENSMUSG00000020801	Med31	3110004H13Rik|CGI-125|l11Jus15	mediator complex subunit 31	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-41905824-4	chr3	41905736	41905936	+	946.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	163218.0	NM_027271	73852.0	Mm.29006	NM_027271	ENSMUSG00000025766	D3Ertd751e	2810009O15Rik|4930415G15Rik	DNA segment, Chr 3, ERATO Doi 751, expressed	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-146592828-4	chr3	146592703	146592903	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019957, intron 3 of 6)	intron (NM_019957, intron 3 of 6)	-4346.0	NM_009474	22262.0	Mm.10865	NM_009474	ENSMUSG00000028186	Uox	AI663847	urate oxidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-94243358-2	chr11	94243258	94243458	+	732.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181819)	promoter-TSS (NM_181819)	-779.0	NM_181819	278507.0	Mm.342216	NM_181819	ENSMUSG00000044177	Wfikkn2	2610304F08Rik|AY100450|Gasp1|WFIKKNRP	WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-39377613-4	chr6	39377483	39377683	+	952.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_155076)	promoter-TSS (NR_155076)	124.0	NM_001361619	72144.0	Mm.482167	NM_028123	ENSMUSG00000029924	Slc37a3	2610507O21Rik|AU044904	solute carrier family 37 (glycerol-3-phosphate transporter), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-55342846-3	chr4	55342786	55342986	+	605.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr	Intergenic	Intergenic	-7156.0	NM_009011	19359.0	Mm.196846	NM_009011	ENSMUSG00000028426	Rad23b	0610007D13Rik|AV001138|HR23B|mHR23B|p58	RAD23 homolog B, nucleotide excision repair protein	protein-coding	1.82955746321107	1.72455502236018	2.22471319408716	2.51415640606683	2.59968873216318	1.91438646247935	1.48235055275842	1.44479003367938	-0.362769483138599	0.715164579252502	0.998431161219273
Merged-chr7-92676229-1	chr7	92676129	92676329	+	628.0	f1_balb.idr	Intergenic	Intergenic	-6317.0	NM_029078	74737.0	Mm.288645	NM_029078	ENSMUSG00000041328	Pcf11	2500001H09Rik|5730417B17Rik|C77803	PCF11 cleavage and polyadenylation factor subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-10827654-2	chr8	10827554	10827754	+	702.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54800.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120553719-2	chr8	120553619	120553819	+	825.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_198671, exon 2 of 16)	exon (NM_198671, exon 2 of 16)	15023.0	NR_106159	102466849.0		NR_106159	ENSMUSG00000098280	Mir7687	Gm27573|mmu-mir-7687	microRNA 7687	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-58290306-2	chr4	58290206	58290406	+	657.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037128, intron 1 of 14)	intron (NM_001037128, intron 1 of 14)	4344.0	NM_010944	18198.0	Mm.16148	NM_010944	ENSMUSG00000057280	Musk	Mdk4|Mlk|Nsk1|Nsk2|Nsk3	muscle, skeletal, receptor tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-138280194-4	chr5	138280106	138280306	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172412)	promoter-TSS (NM_172412)	-269.0	NM_172412	71951.0	Mm.77066	NM_172412	ENSMUSG00000029510	Gpc2	2410016G05Rik	glypican 2 (cerebroglycan)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-12412933-3	chr12	12412852	12413052	+	785.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20477.0	NR_045829	70858.0	Mm.410838	NR_045829	ENSMUSG00000114136	4921511I17Rik	-	RIKEN cDNA 4921511I17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-90235516-4	chr9	90235424	90235624	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 3 of 12)	intron (NM_194334, intron 3 of 12)	35245.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99974777-3	chr7	99974674	99974874	+	745.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175388, intron 1 of 5)	intron (NM_175388, intron 1 of 5)	5684.0	NM_175388	108937.0	Mm.323087	NM_175388	ENSMUSG00000058761	Rnf169	2900057K09Rik	ring finger protein 169	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-33402268-2	chr2	33402168	33402368	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29056.0	NM_001085507	241311.0	Mm.296512	NM_001085507	ENSMUSG00000068966	Zbtb34	Gm349|mKIAA1993	zinc finger and BTB domain containing 34	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-116684391-2	chr4	116684291	116684491	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_040442)	TTS (NR_040442)	-1208.0	NM_011034	18477.0	Mm.30929	NM_011034	ENSMUSG00000028691	Prdx1	MSP23|NkefA|OSF-3|OSF3|PAG|Paga|PrdxI|PrxI|TDX2|TPxA|Tdpx2|prx1	peroxiredoxin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-145618403-1	chr3	145618303	145618503	+	557.0	f1_c57bl6.idr	Intergenic	Intergenic	31582.0	NM_010516	16007.0	Mm.1231	NM_010516	ENSMUSG00000028195	Cyr61	AI325051|CCN1|Igfbp10	cysteine rich protein 61	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180429993-4	chr1	180429903	180430103	+	883.113098	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR40|LTR|ERVK	53501.0	NM_001081227	381310.0	Mm.44791	NM_001081227	ENSMUSG00000053963	Stum	6330403A02Rik|Gm10001|R75555	mechanosensory transduction mediator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-17631852-2	chr6	17631752	17631952	+	764.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5158.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-126104913-4	chr4	126104777	126104977	+	931.6416630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028800, intron 1 of 10)	intron (NM_028800, intron 1 of 10)	920.0	NM_001145827	74178.0	Mm.440269	NM_028800	ENSMUSG00000042608	Stk40	2310004N11Rik|AI428792	serine/threonine kinase 40	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-66901896-2	chr10	66901796	66901996	+	903.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	18488.0	NR_138560	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-113681531-4	chr6	113681425	113681625	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 8 of 11)	intron (NM_001113553, intron 8 of 11)	-15525.0	NM_001347356	381801.0	Mm.333322	NM_001033463	ENSMUSG00000056952	Tatdn2	AI646012|mKIAA0218	TatD DNase domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-18953743-2	chr10	18953643	18953843	+	941.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58220.0	NM_001166402	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-61528661-2	chr8	61528561	61528761	+	649.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001293772, intron 16 of 21)	intron (NM_001293772, intron 16 of 21)	40927.0	NM_145595	234309.0	Mm.29059	NM_145595	ENSMUSG00000031641	Cbr4	A730083J17Rik|BC009118	carbonyl reductase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-127149753-6	chr6	127149699	127149899	+	818.716675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040273, exon 1 of 3)	non-coding (NR_040273, exon 1 of 3)	173.0	NR_040273	77558.0	Mm.358918	NR_040273	ENSMUSG00000097166	9330179D12Rik	-	RIKEN cDNA 9330179D12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-73128648-4	chr11	73128546	73128746	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361245, intron 20 of 30)	B1F|SINE|Alu	9648.0	NM_010353	14841.0	Mm.42045	NM_010353	ENSMUSG00000050107	Haspin	Gsg2	histone H3 associated protein kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-75839850-4	chr13	75839754	75839954	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360151)	promoter-TSS (NM_001360151)	-31.0	NM_001360151	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	5.23621391689324	4.36285020277809	5.55063450421112	4.81760608303589	5.68905934518391	4.64929033357011	5.39340890616955	5.06185855836704	0.225699724988903	0.526911118610296	0.948839578239191
Merged-chr2-163703148-4	chr2	163703058	163703258	+	945.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011106, intron 1 of 3)	intron (NM_011106, intron 1 of 3)	9121.0	NM_011106	18769.0	Mm.10091	NM_011106	ENSMUSG00000035268	Pkig	PKIgamma	protein kinase inhibitor, gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97402806-2	chr11	97402706	97402906	+	731.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40255.0	NM_138657	192157.0	Mm.34339	NM_138657	ENSMUSG00000038485	Socs7	2310063P06Rik|C85125|Nap4	suppressor of cytokine signaling 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-17595860-3	chr6	17595753	17595953	+	841.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41157.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124012126-3	chr5	124012000	124012200	+	847.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177876, intron 1 of 3)	intron (NM_177876, intron 1 of 3)	15248.0	NR_105999	102465625.0		NR_105999	ENSMUSG00000098454	Mir7032	Gm27309|mmu-mir-7032	microRNA 7032	ncRNA	0.81317354292964	0.00895073745836729	-0.207860340523497	-0.212291718867063	0.0797313643269429	-0.200864532881271	-0.206597393593722	-0.211516038240647	-2.40855943776845	0.3067562679268	1
Merged-chr17-78740515-1	chr17	78740415	78740615	+	629.5	f0_balb.idr	Intergenic	Intergenic	-3955.0	NM_011500	268980.0	Mm.311915	NM_011500	ENSMUSG00000024077	Strn	AU022939|D130055P19	striatin, calmodulin binding protein	protein-coding	1.85006147555858	2.51759975749617	3.40571841724631	1.97061708653948	2.62419576855796	3.8247846424695	4.19044121777702	2.64841483302798	1.50306725838317	0.0477807989677624	0.317310346502886
Merged-chr1-24613074-3	chr1	24612973	24613173	+	976.2000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25636.0	NM_007733	12823.0	Mm.329196	NM_007733	ENSMUSG00000026141	Col19a1	-	collagen, type XIX, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-120516659-4	chr5	120516566	120516766	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177595, intron 2 of 13)	intron (NM_001177595, intron 2 of 13)	5474.0	NM_001177594	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-88875291-2	chr6	88875191	88875391	+	592.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347327)	promoter-TSS (NM_001347327)	-247.0	NM_001347327	319655.0	Mm.302613	NM_176973	ENSMUSG00000033152	Podxl2	D130074J02Rik|PODLX2	podocalyxin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-118621269-1	chr14	118621169	118621369	+	600.0	f0_balb.idr	intron (NM_001163676, intron 7 of 29)	RLTR22_Mur|LTR|ERVK	-28797.0	NR_105815	102465208.0		NR_105815	ENSMUSG00000098433	Mir6391	Gm27914|mmu-mir-6391	microRNA 6391	ncRNA	0.939972927202563	1.65696629778157	0.965080929978808	1.66000688458227	1.09680241131276	1.67016401696425	0.967780513757315	2.28080721410441	1.1099137820468	0.425181012788146	0.901293602726532
Merged-chr7-16842311-2	chr7	16842211	16842411	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252458)	promoter-TSS (NM_001252458)	-591.0	NM_001252458	101540.0	Mm.1881	NM_178900	ENSMUSG00000041187	Prkd2	AI325941|PKD2	protein kinase D2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-77270898-4	chr12	77270789	77270989	+	993.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045554, intron 1 of 11)	MTD|LTR|ERVL-MaLR	32150.0	NR_045554	53618.0	Mm.35628	NM_016893	ENSMUSG00000021065	Fut8	-	fucosyltransferase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-72169425-3	chr4	72169375	72169575	+	895.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285530, intron 5 of 17)	intron (NM_001285530, intron 5 of 17)	31418.0	NM_011599	21885.0	Mm.278444	NM_011599	ENSMUSG00000008305	Tle1	C230057C06Rik|Estm14|Grg-1|Grg1|Tle4l	transducin-like enhancer of split 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-108190198-2	chr9	108190098	108190298	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_007567, exon 1 of 12)	exon (NM_007567, exon 1 of 12)	185.0	NM_007567	12217.0	Mm.20425	NM_007567	ENSMUSG00000032589	Bsn	-	bassoon	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127739560-5	chr10	127739489	127739689	+	980.18573	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198035)	promoter-TSS (NM_198035)	51.0	NM_198035	320080.0	Mm.27258	NM_198035	ENSMUSG00000044617	Zbtb39	7030401O21Rik|mKIAA0352	zinc finger and BTB domain containing 39	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-58160466-2	chr13	58160366	58160566	+	787.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001048060, intron 3 of 3)	intron (NM_001048060, intron 3 of 3)	2817.0	NM_198004	75731.0	Mm.293919	NM_198004	ENSMUSG00000050002	Idnk	5133401N09Rik	idnK gluconokinase homolog (E. coli)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34928795-2	chr17	34928695	34928895	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023557, intron 18 of 20)	intron (NM_023557, intron 18 of 20)	-2458.0	NM_010893	18010.0	Mm.8856	NM_010893	ENSMUSG00000007038	Neu1	AA407268|AA407316|Aglp|Apl|Bat-7|Bat7|G9|Map-2|Neu|Neu-1	neuraminidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-95695583-4	chr12	95695490	95695690	+	930.633301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201518, intron 1 of 1)	CpG	3364.0	NM_201518	399558.0	Mm.341948	NM_201518	ENSMUSG00000047414	Flrt2	-	fibronectin leucine rich transmembrane protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118766218-1	chr9	118766118	118766318	+	805.5	f1_balb.idr	intron (NM_001113514, intron 1 of 13)	intron (NM_001113514, intron 1 of 13)	54526.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-89171870-4	chr15	89171774	89171974	+	874.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138749, intron 1 of 37)	intron (NM_138749, intron 1 of 37)	2077.0	NM_001159521	140570.0	Mm.267514	NM_138749	ENSMUSG00000036606	Plxnb2	Debt|plexin-B2	plexin B2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-70251479-2	chr12	70251379	70251579	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110202, intron 9 of 11)	intron (NM_001110202, intron 9 of 11)	23638.0	NR_045174	414124.0	Mm.416164	NR_045174	ENSMUSG00000085298	F730035M05Rik	-	RIKEN cDNA F730035M05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-24865373-2	chr7	24865273	24865473	+	588.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_182785, exon 4 of 5)	exon (NM_182785, exon 4 of 5)	4318.0	NM_182785	232973.0	Mm.189648	NM_182785	ENSMUSG00000062732	Lypd4	4933400F01Rik	Ly6/Plaur domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3833928-3	chr12	3833796	3833996	+	854.633301	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271753, intron 1 of 22)	intron (NM_001271753, intron 1 of 22)	26736.0	NM_001271753	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-75516602-4	chr10	75516469	75516669	+	807.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347201, intron 1 of 5)	intron (NM_001347201, intron 1 of 5)	812.0	NM_175133	68778.0	Mm.29382	NM_175133	ENSMUSG00000033416	Gucd1	1110038D17Rik	guanylyl cyclase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-124234622-4	chr4	124234526	124234726	+	809.229187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	251333.0	NR_040774	78460.0	Mm.452060	NR_040774		1700057H15Rik	-	RIKEN cDNA 1700057H15 gene	ncRNA	2.47082636380652	3.0302683251422	2.35165061912823	2.2860054164886	2.49123095914126	2.57607393342558	1.43530027528946	2.29767023443668	-0.638959813613728	0.454502860586104	0.919120493489568
Merged-chr14-33185541-4	chr14	33185426	33185626	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146022)	promoter-TSS (NM_001146022)	-460.0	NM_001146022	545030.0	Mm.318345	NM_001146022	ENSMUSG00000051506	Wdfy4	Gm18810	WD repeat and FYVE domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-33930387-2	chr17	33930287	33930487	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_009059, exon 2 of 18)	exon (NM_009059, exon 2 of 18)	493.0	NM_009059	19732.0	Mm.43777	NM_009059	ENSMUSG00000041354	Rgl2	KE1.5|Rab2l|Rgt2|Rlf	ral guanine nucleotide dissociation stimulator-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-3697701-3	chr10	3697597	3697797	+	950.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42680.0	NM_001159942	213783.0	Mm.150831	NM_001033253	ENSMUSG00000040624	Plekhg1	D10Ertd733e|Gm521|mKIAA1209	pleckstrin homology domain containing, family G (with RhoGef domain) member 1	protein-coding	4.04340335560066	3.51378265725626	1.50552524525706	3.41293451181472	1.80558077749517	1.2546068427771	1.20083599625059	1.92471248927177	-3.57856676693452	0.000207386940497101	0.00555408150018798
Merged-chr3-95637931-1	chr3	95637831	95638031	+	545.0	f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	12951.0	NM_001026212	56205.0	Mm.241365	NM_019561	ENSMUSG00000038619	Ensa	1700020C18Rik|2610007F17Rik|AI451924	endosulfine alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118150277-2	chr11	118150177	118150377	+	789.900024	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21058.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-22798721-1	chr16	22798621	22798821	+	631.0	f0_balb.idr	Intergenic	Intergenic	12689.0	NM_009967	12970.0	Mm.6253	NM_009967	ENSMUSG00000033501	Crygs	AI327013|Opj|rncat	crystallin, gamma S	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-131910770-4	chr4	131910677	131910877	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_102393, intron 3 of 4)	RMER15-int|LTR|ERVL	9252.0	NR_102394	545681.0	Mm.2478	NR_102393	ENSMUSG00000085667	Gm12992	-	predicted gene 12992	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-23237791-4	chr8	23237695	23237895	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024240)	promoter-TSS (NM_024240)	-127.0	NM_024240	109145.0	Mm.27945	NM_024240	ENSMUSG00000031546	Gins4	2810037C03Rik|4933405K01Rik|Sld5	GINS complex subunit 4 (Sld5 homolog)	protein-coding	6.25783944674085	6.40453673445986	6.61071741556984	6.32648347804897	6.49483257999791	6.40474441102815	6.92245225873207	6.00849905020674	0.0969350458635249	0.666953620757134	0.992549218580075
Merged-chr11-121781955-3	chr11	121781839	121782039	+	767.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48279.0	NM_029049	74675.0	Mm.61213	NM_029049	ENSMUSG00000039198	Ptchd3	4930451E13Rik|4933440L20Rik|RNDEu-3	patched domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180422274-4	chr1	180422157	180422357	+	999.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001081175, exon 8 of 8)	3' UTR (NM_001081175, exon 8 of 8)	61247.0	NM_001081227	381310.0	Mm.44791	NM_001081227	ENSMUSG00000053963	Stum	6330403A02Rik|Gm10001|R75555	mechanosensory transduction mediator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-34257128-4	chr13	34257029	34257229	+	868.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033167, intron 3 of 10)	intron (NM_001033167, intron 3 of 10)	88053.0	NM_001033167	73102.0	Mm.23932	NM_001033167	ENSMUSG00000038267	Slc22a23	3110004L20Rik	solute carrier family 22, member 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-56264463-4	chr9	56264382	56264582	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172924, intron 3 of 6)	intron (NM_172924, intron 3 of 6)	-103412.0	NM_019793	56434.0	Mm.28484	NM_019793	ENSMUSG00000032324	Tspan3	1700055K04Rik|TM4-A|Tm4sf8	tetraspanin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-4407941-2	chr6	4407841	4408041	+	579.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-97677.0	NM_007743	12843.0	Mm.277792	NM_007743	ENSMUSG00000029661	Col1a2	AA960264|AI325291|Col1a-2|Cola-2|Cola2|oim	collagen, type I, alpha 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-108420118-2	chr11	108420018	108420218	+	678.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5148.0	NM_029606	76380.0	Mm.344071	NM_029586	ENSMUSG00000020728	Cep112	1700001M19Rik|1700029K01Rik|8430407H02Rik|AV043680|AV207351|Ccdc46|Macoco	centrosomal protein 112	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-3330641-2	chr18	3330541	3330741	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110851, intron 1 of 4)	intron (NM_001110851, intron 1 of 4)	-3050.0	NM_001110850	12916.0	Mm.5244	NM_013498	ENSMUSG00000063889	Crem	ICER|ICERI	cAMP responsive element modulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98701924-2	chr11	98701824	98702024	+	946.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009971, intron 2 of 4)	intron (NM_009971, intron 2 of 4)	611.0	NM_009971	12985.0	Mm.1238	NM_009971	ENSMUSG00000038067	Csf3	Csfg|G-CSF|MGI-IG	colony stimulating factor 3 (granulocyte)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-86187987-4	chr17	86187881	86188081	+	928.525024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011104, intron 1 of 14)	ORR1C2|LTR|ERVL-MaLR	20196.0	NM_011104	18754.0	Mm.24614	NM_011104	ENSMUSG00000045038	Prkce	5830406C15Rik|PKC[e]|PKCepsilon|Pkce|R75156	protein kinase C, epsilon	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-48016671-4	chr8	48016529	48016729	+	942.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26078.0	NM_133791	52357.0	Mm.235074	NM_133791	ENSMUSG00000031563	Wwc2	5330431C14Rik|AU022508|C85457|D8Ertd594e	WW, C2 and coiled-coil domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-130811127-2	chr4	130811027	130811227	+	896.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011520, intron 1 of 4)	intron (NM_011520, intron 1 of 4)	18590.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-62458064-1	chr11	62457964	62458164	+	688.0	f0_c57.idr	promoter-TSS (NM_177229)	promoter-TSS (NM_177229)	-396.0	NM_001039536	327942.0	Mm.390358	NM_199026	ENSMUSG00000014245	Pigl	Gm737	phosphatidylinositol glycan anchor biosynthesis, class L	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-138253643-4	chr1	138253536	138253736	+	934.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-20102.0	NM_177397	338375.0	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-98785626-2	chr1	98785526	98785726	+	641.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C|LTR|ERVK	364502.0	NM_027584	70866.0	Mm.389164	NM_027584	ENSMUSG00000026336	Slco6d1	4921511I05Rik	solute carrier organic anion transporter family, member 6d1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-16428540-2	chr8	16428440	16428640	+	589.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_053171, intron 7 of 69)	intron (NM_053171, intron 7 of 69)	-259702.0	NR_037214	100526464.0		NR_037214	ENSMUSG00000093142	Mir3106	mir-3106|mmu-mir-3106	microRNA 3106	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-23068134-4	chr2	23068041	23068241	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028793)	promoter-TSS (NM_028793)	-60.0	NR_149742	74159.0	Mm.181973	NM_028793	ENSMUSG00000026781	Acbd5	1300014E15Rik	acyl-Coenzyme A binding domain containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115550783-3	chr5	115550712	115550912	+	798.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_011223, intron 6 of 10)	intron (NM_011223, intron 6 of 10)	-8655.0	NM_007475	11837.0	Mm.5286	NM_007475	ENSMUSG00000067274	Rplp0	36B4|Arbp|L10E	ribosomal protein, large, P0	protein-coding	0.904157142708798	0.631519500350221	1.25742656596724	0.611423222839285	0.598799895141205	1.44468178852466	0.99817988347838	1.42415251865467	1.26677044986401	0.415189469929888	0.896676881011847
Merged-chr11-117772588-2	chr11	117772488	117772688	+	586.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145439, intron 13 of 19)	intron (NM_145439, intron 13 of 19)	7060.0	NR_154387	217353.0	Mm.286963	NM_145439	ENSMUSG00000025572	Tmc6	D11Ertd204e|EVER1	transmembrane channel-like gene family 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-182707686-4	chr1	182707586	182707786	+	968.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	41494.0	NM_001033547	433386.0	Mm.338103	NM_001033547	ENSMUSG00000043429	Ccdc185	4922505E12Rik	coiled-coil domain containing 185	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-73445672-4	chr13	73445549	73445749	+	801.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13A2|LTR|ERVK	-21734.0	NM_145376	210992.0	Mm.284649	NM_145376	ENSMUSG00000021608	Lpcat1	2900035H07Rik|Aytl2|BB137372|BC005662|C87117|LPCAT|rd11	lysophosphatidylcholine acyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141865164-1	chr4	141865064	141865264	+	1000.0	f1_balb.idr	intron (NM_025994, intron 1 of 3)	MTE2a|LTR|ERVL-MaLR	9756.0	NM_025994	27984.0	Mm.395598	NM_025994	ENSMUSG00000040659	Efhd2	2600015J22Rik|AA408606|D4Wsu27e	EF hand domain containing 2	protein-coding	1.42784054497247	1.14371172568779	2.05814113454247	1.89328804359482	1.70076226135511	1.39328582111016	2.07498099480711	2.19181168704273	0.567967686098515	0.601836830547984	0.973429960802861
Merged-chr7-3646829-2	chr7	3646729	3646929	+	554.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146176, intron 1 of 17)	intron (NM_146176, intron 1 of 17)	1560.0	NM_146176	232791.0	Mm.358731	NM_146176	ENSMUSG00000035632	Cnot3	A930039N10Rik	CCR4-NOT transcription complex, subunit 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-99166588-3	chr10	99166487	99166687	+	880.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153333, intron 11 of 12)	intron (NR_153333, intron 11 of 12)	58452.0	NM_015737	14426.0	Mm.314	NM_015737	ENSMUSG00000090035	Galnt4	AV011803	polypeptide N-acetylgalactosaminyltransferase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106035788-2	chr11	106035688	106035888	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1084.0	NM_027946	71833.0	Mm.307455	NM_027946	ENSMUSG00000049354	Dcaf7	1700012F10Rik|2610037L01Rik|C86529|HAN11|Wdr68	DDB1 and CUL4 associated factor 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-31181392-4	chr7	31181299	31181499	+	976.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16|LTR|ERVK	19041.0	NR_046062	100038516.0	Mm.387223	NR_046062	ENSMUSG00000100985	Gm10640	EG668322	predicted gene 10640	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-88057039-3	chr6	88056944	88057144	+	943.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11774.0	NM_009005	19349.0	Mm.333233	NM_009005	ENSMUSG00000079477	Rab7	Rab7a	RAB7, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118400747-4	chr11	118400640	118400840	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011150, intron 1 of 5)	MLTR14|LTR|ERV1	1219.0	NM_011150	19039.0	Mm.3152	NM_011150	ENSMUSG00000033880	Lgals3bp	90K|CyCAP|MAC-2BP|Ppicap|Tango10b	lectin, galactoside-binding, soluble, 3 binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69792117-2	chr11	69792017	69792217	+	576.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009601, intron 7 of 10)	MTD|LTR|ERVL-MaLR	3820.0	NM_009601	11443.0	Mm.86425	NM_009601	ENSMUSG00000041189	Chrnb1	Achr-2|Acrb	cholinergic receptor, nicotinic, beta polypeptide 1 (muscle)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-32486746-2	chr9	32486646	32486846	+	588.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008026, intron 1 of 8)	MIRb|SINE|MIR	54706.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84230150-2	chr8	84230050	84230250	+	708.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172503, intron 3 of 13)	intron (NM_172503, intron 3 of 13)	6892.0	NM_172503	212168.0	Mm.117094	NM_172503	ENSMUSG00000035671	Zswim4	D330002I24|E130119J17Rik	zinc finger SWIM-type containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-98978025-3	chr15	98977936	98978136	+	789.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7929.0	NR_045991	75951.0	Mm.441657	NR_045991	ENSMUSG00000097587	4930578M01Rik	3010001K12Rik	RIKEN cDNA 4930578M01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-57619660-4	chr14	57619562	57619762	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020506, intron 6 of 22)	intron (NM_020506, intron 6 of 22)	45294.0	NM_020506	57258.0	Mm.202747	NM_020506	ENSMUSG00000021952	Xpo4	B430309A01Rik|mKIAA1721	exportin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-38298370-2	chr15	38298270	38298470	+	790.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013692, intron 1 of 3)	intron (NM_013692, intron 1 of 3)	1530.0	NM_001357677	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-62641979-3	chr2	62641874	62642074	+	654.516663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164477, intron 1 of 14)	intron (NM_001164477, intron 1 of 14)	4281.0	NM_027835	71586.0	Mm.136224	NM_027835	ENSMUSG00000026896	Ifih1	9130009C22Rik|Helicard|Hlcd|MDA5|RLR-2	interferon induced with helicase C domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-65630759-4	chr17	65630643	65630843	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	9013.0	NM_153519	213272.0	Mm.255732	NM_153519	ENSMUSG00000050612	Txndc2	AU021712|Sptrx-1|Sptrx1|Trx4	thioredoxin domain containing 2 (spermatozoa)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-9765026-4	chr13	9764910	9765110	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347472)	promoter-TSS (NM_001347472)	-54.0	NM_001347473	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-75981829-4	chr2	75981659	75981859	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_030188, exon 1 of 1)	5' UTR (NM_030188, exon 1 of 1)	208.0	NM_030188	78802.0	Mm.282339	NM_030188	ENSMUSG00000075271	Ttc30a1	4930506L13Rik	tetratricopeptide repeat domain 30A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-116890527-4	chr2	116890417	116890617	+	934.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355572, intron 10 of 10)	intron (NM_001355572, intron 10 of 10)	-9635.0	NR_040336	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6668748-4	chr19	6668625	6668825	+	956.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-125655.0	NM_009203	20521.0	Mm.391146	NM_009203	ENSMUSG00000061742	Slc22a12	AI987855|OAT4L|Rst|Slc22al2|URAT1	solute carrier family 22 (organic anion/cation transporter), member 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19176619-2	chr7	19176519	19176719	+	849.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001347582, exon 1 of 22)	exon (NM_001347582, exon 1 of 22)	198.0	NM_001347582	72205.0	Mm.154121	NM_028153	ENSMUSG00000040811	Eml2	1600029N02Rik|EMAP-2	echinoderm microtubule associated protein like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-79664951-3	chr3	79664849	79665049	+	641.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_212452, intron 9 of 17)	intron (NM_212452, intron 9 of 17)	35870.0	NM_029482	75939.0	Mm.221520	NM_029482	ENSMUSG00000027811	4930579G24Rik	-	RIKEN cDNA 4930579G24 gene	protein-coding	1.40443125594536	1.13281496440529	1.2283562454293	0.748983647597473	1.02304651292571	1.14121069994633	0.946426028255219	1.31040536652997	-0.197237453743404	0.883727743520778	0.998431161219273
Merged-chr19-46136207-5	chr19	46136117	46136317	+	661.650024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_007703)	TTS (NM_007703)	4318.0	NM_007703	12686.0	Mm.21806	NM_007703	ENSMUSG00000038754	Elovl3	CIN-2|Cig30	elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-159305213-3	chr1	159305111	159305311	+	576.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011931, intron 11 of 19)	MTD|LTR|ERVL-MaLR	11438.0	NR_144489	100846986.0		NR_144489		Pou5f1-rs1	Gm21053|Oct4P2|Otf-3rs|Otf3-rs1|Otf3a	POU domain, class 5, transcription factor 1, related sequence 1	pseudo	-0.211710110093408	-0.664089044134948	-0.66736210898813	-0.146974361460899	-0.673431173837638	-0.663349994660731	-0.666640996874487	-0.669441417669647	-3.23597711383365	0.258329570839564	1
Merged-chr9-65556605-2	chr9	65556505	65556705	+	850.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_153119, exon 6 of 6)	exon (NM_153119, exon 6 of 6)	23482.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-121545444-4	chr5	121545332	121545532	+	903.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010765, exon 1 of 14)	5' UTR (NM_010765, exon 1 of 14)	460.0	NM_010765	17165.0	Mm.272206	NM_010765	ENSMUSG00000029454	Mapkapk5	MK5|PRAK	MAP kinase-activated protein kinase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-11697956-2	chr16	11697856	11698056	+	785.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028964, intron 18 of 20)	intron (NM_028964, intron 18 of 20)	-81746.0	NR_126430	73761.0	Mm.39183	NR_126430		4833415N18Rik	-	RIKEN cDNA 4833415N18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-115088695-2	chr13	115088595	115088795	+	569.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_134058, exon 2 of 2)	exon (NM_134058, exon 2 of 2)	1463.0	NM_134058	105083.0	Mm.486295	NM_134058	ENSMUSG00000042275	Pelo	AA409897|AI852218	pelota mRNA surveillance and ribosome rescue factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-77191850-4	chr5	77191756	77191956	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19349.0	NM_001289767	69982.0	Mm.46106	NM_183284	ENSMUSG00000053030	Spink2	1700007F22Rik|AV038945|HUSI-II	serine peptidase inhibitor, Kazal type 2	protein-coding	4.69819205989411	5.35558746521851	5.31730791377118	4.17697228237989	2.59360379985304	4.20658358224574	4.59691798156765	4.55749545048777	-0.979266795227748	0.0420393254036666	0.29359012001932
Merged-chr5-32852190-3	chr5	32852076	32852276	+	795.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194340, intron 1 of 10)	B1F1|SINE|Alu	2054.0	NM_194340	215476.0	Mm.248721	NM_194340	ENSMUSG00000054280	Prr14l	6030436E02Rik|C330019G07Rik|Prl14l	proline rich 14-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-61119410-2	chr18	61119326	61119526	+	822.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037859, intron 11 of 21)	intron (NM_001037859, intron 11 of 21)	1958.0	NR_105949	102466212.0		NR_105949	ENSMUSG00000098389	Mir6983	Gm27496|mmu-mir-6983	microRNA 6983	ncRNA	2.04265776214013	1.95545487591017	1.18731724043708	1.5573431468765	2.28988572478415	1.96980453394749	1.90496364166687	1.71565223972299	0.730067330509383	0.481144530834734	0.929210758613564
Merged-chr9-63006255-4	chr9	63006137	63006337	+	880.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25358.0	NM_019663	56469.0	Mm.431253	NM_019663	ENSMUSG00000032405	Pias1	2900068C24Rik|Ddxbp1|GBP	protein inhibitor of activated STAT 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-90019747-4	chr7	90019648	90019848	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9411.0	NR_110365	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-44621095-2	chr15	44620995	44621195	+	599.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019480, intron 1 of 6)	intron (NM_019480, intron 1 of 6)	1454.0	NM_019480	55960.0	Mm.287896	NM_019480	ENSMUSG00000022339	Ebag9	AI835379|Rcas1	estrogen receptor-binding fragment-associated gene 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-76382475-2	chr14	76382375	76382575	+	831.416626	f1_balb.idr|f1_c57bl6.idr	Intergenic	(A)n|Simple_repeat|Simple_repeat	-32486.0	NM_001310646	21807.0	Mm.153272	NM_009366	ENSMUSG00000022010	Tsc22d1	AA589566|AW105905|Egr5|TSC-22|Tgfb1i4|Tsc|Tsc22	TSC22 domain family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-97954448-4	chr16	97954368	97954568	+	935.2708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001320385, intron 1 of 2)	intron (NM_001320385, intron 1 of 2)	8154.0	NM_001081685	114565.0	Mm.474489	NM_175428	ENSMUSG00000046962	Zbtb21	5430437K12Rik|B430213I24Rik|Zfp295|Znf295|mKIAA1227	zinc finger and BTB domain containing 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-29195840-3	chr5	29195743	29195943	+	923.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289757)	promoter-TSS (NM_001289757)	-150.0	NM_001289757	56874.0	Mm.87352	NM_021470	ENSMUSG00000029130	Rnf32	1700009J01Rik|2700025B22Rik|4930542N22Rik|Lmbr2	ring finger protein 32	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-108225440-4	chr11	108225347	108225547	+	976.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011101, intron 2 of 16)	B4|SINE|B4	118441.0	NM_011101	18750.0	Mm.222178	NM_011101	ENSMUSG00000050965	Prkca	AI875142|Pkca	protein kinase C, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-43785881-1	chr5	43785781	43785981	+	592.0	f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-3732.0	NM_178729	242960.0	Mm.25794	NM_178729	ENSMUSG00000039753	Fbxl5	Fbl4|Fir4	F-box and leucine-rich repeat protein 5	protein-coding	0.142688700302869	1.3115013682353	-0.0217037666389479	0.178505537522544	0.303971437452149	-0.0110669179586876	-0.0197724283757289	-0.0273225375525525	-2.83520492915851	0.162202949093951	1
Merged-chr10-51493767-2	chr10	51493667	51493867	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291894, intron 5 of 8)	intron (NM_001291894, intron 5 of 8)	2869.0	NM_013532	14728.0	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3226863-2	chr4	3226763	3226963	+	548.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-41558.0	NM_001167535	100312471.0	Mm.377218	NM_001167535	ENSMUSG00000115466	Vmn1r3	Gm11778	vomeronasal 1 receptor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-113606305-4	chr13	113606209	113606409	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130796, intron 1 of 1)	intron (NM_130796, intron 1 of 1)	12255.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98005231-2	chr11	98005131	98005331	+	550.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001159320, exon 12 of 12)	exon (NM_001159320, exon 12 of 12)	-9058.0	NR_152188	217151.0	Mm.277896	NM_207231	ENSMUSG00000038352	Arl5c	Arl12|BC065791	ADP-ribosylation factor-like 5C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-65800418-5	chr18	65800279	65800479	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025468)	promoter-TSS (NM_025468)	-199.0	NM_025468	66286.0	Mm.27800	NM_025468	ENSMUSG00000024516	Sec11c	1810029G24Rik|Sec11l3	SEC11 homolog C, signal peptidase complex subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-35841745-4	chr2	35841640	35841840	+	953.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029774, intron 6 of 9)	intron (NM_029774, intron 6 of 9)	22550.0	NR_040618	77665.0	Mm.400558	NR_040618	ENSMUSG00000086449	9030204H09Rik	-	RIKEN cDNA 9030204H09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-120469957-4	chr2	120469863	120470063	+	846.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040608)	promoter-TSS (NR_040608)	-596.0	NR_040608	70933.0	Mm.444742	NR_040608		4931402G19Rik	-	RIKEN cDNA 4931402G19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-40495825-3	chr8	40495729	40495929	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011135, exon 6 of 7)	exon (NM_011135, exon 6 of 7)	14650.0	NM_001361938	18983.0	Mm.272551	NM_011135	ENSMUSG00000031601	Cnot7	AU022737|CAF-1|Caf1|Pop2	CCR4-NOT transcription complex, subunit 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111672342-4	chr12	111672243	111672443	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021273)	promoter-TSS (NM_021273)	-5.0	NM_021273	12709.0	Mm.16831	NM_021273	ENSMUSG00000001270	Ckb	B-CK|Bck|CPK-B|Ck-3|Ck3|Ckbb	creatine kinase, brain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55142112-4	chr14	55142026	55142226	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-25191.0	NM_177049	319984.0	Mm.19047	NM_177049	ENSMUSG00000022208	Jph4	9330157P13Rik|JP-4|JPHL1	junctophilin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69089927-2	chr11	69089827	69090027	+	828.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009497, intron 3 of 4)	intron (NM_009497, intron 3 of 4)	1399.0	NM_009497	22318.0	Mm.28643	NM_009497	ENSMUSG00000020894	Vamp2	Syb-2|Syb2|Vamp-2|sybII	vesicle-associated membrane protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-12735899-4	chr10	12735815	12736015	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011682, intron 11 of 73)	intron (NM_011682, intron 11 of 73)	125820.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-9388942-2	chr14	9388842	9389042	+	806.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-495153.0	NR_030680	100042415.0	Mm.235938	NR_030680	ENSMUSG00000089686	Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-74841903-4	chr14	74841802	74842002	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033439, intron 2 of 19)	RLTR11A2|LTR|ERVK	105975.0	NM_001252132	380916.0	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-125554609-4	chr7	125554515	125554715	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001008700, intron 1 of 10)	intron (NM_001008700, intron 1 of 10)	2333.0	NM_001008700	16190.0	Mm.233802	NM_010557	ENSMUSG00000030748	Il4ra	CD124|Il4r	interleukin 4 receptor, alpha	protein-coding	0.29263199824682	-0.0266807525693854	0.125484606945355	0.23507784952296	0.300387364714377	-0.025762399515758	-0.0298435367418654	0.23921536891309	-0.265572318874012	0.896264497066862	1
Merged-chr5-135404439-2	chr5	135404339	135404539	+	563.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9893.0	NM_148932	107939.0	Mm.28399	NM_148932	ENSMUSG00000053293	Pom121	2610027A18Rik|C80273|mKIAA0618	nuclear pore membrane protein 121	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-23387103-4	chr5	23387001	23387201	+	991.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47252.0	NR_040469	269630.0	Mm.425231	NR_040469	ENSMUSG00000073147	5031425E22Rik	-	RIKEN cDNA 5031425E22 gene	ncRNA	4.14631984521349	3.29049611154903	3.94622657598472	2.72375696052898	3.79121415389286	3.20033961058216	3.40101982626895	3.10193786863487	-0.369082032131453	0.526526785617839	0.94877971795044
Merged-chr3-87859980-4	chr3	87859894	87860094	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033573, intron 6 of 6)	intron (NM_033573, intron 6 of 6)	13239.0	NM_021309	27371.0	Mm.86361	NM_021309	ENSMUSG00000028071	Sh2d2a	Lad|Ribp|Tsad	SH2 domain containing 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24852904-1	chr17	24852804	24853004	+	883.0	f1_c57bl6.idr	exon (NM_024284, exon 2 of 9)	exon (NM_024284, exon 2 of 9)	2237.0	NM_001159626	14651.0	Mm.43784	NM_024284	ENSMUSG00000024158	Hagh	BC019817|Glo-2|Glo2|Rsp29	hydroxyacyl glutathione hydrolase	protein-coding	0.922997103942597	0.668951849932902	1.36122550349469	1.10091450213758	0.930574703134959	0.67114644575003	1.37450130218809	0.978458519648814	-0.111125986280706	0.9392028533156	0.998431161219273
Merged-chr15-8341137-2	chr15	8341037	8341237	+	591.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_201232, intron 11 of 45)	intron (NM_201232, intron 11 of 45)	103326.0	NM_027707	71175.0	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	NIPBL cohesin loading factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-60508464-3	chr13	60508399	60508599	+	775.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-93448.0	NM_001285917	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	-2.18292257394068	-2.15545247547656	-2.03304972317742	-2.17058342868585	-2.18099422382073	-2.1536522739386	-2.16187909550322	-2.16936197735154	-0.683654500252594	0.846597994014493	1
Merged-chr4-141143865-2	chr4	141143765	141143965	+	883.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4057.0	NM_172518	213499.0	Mm.28865	NM_172518	ENSMUSG00000028920	Fbxo42	6720460I06Rik|mKIAA1332	F-box protein 42	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-27043465-4	chr8	27043389	27043589	+	954.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039077, intron 1 of 4)	intron (NM_001039077, intron 1 of 4)	934.0	NM_054057	114863.0	Mm.277501	NM_054057	ENSMUSG00000031485	Plpbp	1700024N20Rik|2200002F22Rik|Prosc	pyridoxal phosphate binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-96396312-2	chr9	96396212	96396412	+	747.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31881.0	NM_001357212	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	-1.18832717429738	-1.16380929885254	-0.856565824811958	-1.18328408639367	-1.18787580914644	-1.16149229066421	-0.849604865165746	-1.18171197755832	0.0406512889656815	0.990321405100139	1
Merged-chr1-57429128-3	chr1	57429048	57429248	+	752.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22474.0	NM_001302963	68736.0	Mm.288490	NM_001037742	ENSMUSG00000048495	Tyw5	1110034B05Rik	tRNA-yW synthesizing protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-105169136-3	chr4	105169044	105169244	+	902.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080555, intron 1 of 5)	intron (NM_080555, intron 1 of 5)	11797.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-60491828-1	chr13	60491728	60491928	+	562.0	f0_c57.idr	Intergenic	Intergenic	-110119.0	NM_001285917	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	3.18156274664475	4.03876443983993	2.69452048782104	2.72076586227738	2.09358048079433	2.93552101194182	1.36351951202981	1.3153063671507	-2.17789344696028	0.0122469498105706	0.125681529155102
Merged-chr7-99134968-1	chr7	99134868	99135068	+	557.0	f1_c57bl6.idr	intron (NM_178635, intron 1 of 14)	B1_Mus1|SINE|Alu	6176.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	-0.275007496010347	-0.807016901667923	-0.80989293593523	-0.653151005090781	-0.815206336807129	-0.804420663637705	-0.634082061033852	-0.811714757980534	-2.02174344280115	0.472637912358214	1
Merged-chr12-25310811-1	chr12	25310711	25310911	+	584.0	f1_c57bl6.idr	Intergenic	Intergenic	181637.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	3.07715361561536	1.08522255076314	3.34625763160432	1.73576748562352	2.83186881542128	1.09421107600731	1.3597614699406	1.01597783040956	-1.56399718161678	0.422264189279287	0.900322118218157
Merged-chr6-46143342-3	chr6	46143247	46143447	+	712.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004357, intron 8 of 23)	intron (NM_001004357, intron 8 of 23)	1083286.0	NM_001004357	66797.0	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31189542-4	chr14	31189417	31189617	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347583, intron 7 of 13)	intron (NM_001347583, intron 7 of 13)	17309.0	NM_022656	64652.0	Mm.298728	NM_022656	ENSMUSG00000021910	Nisch	1200007D05Rik|3202002H23Rik|AW494485|I-1|edsn	nischarin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-100632947-4	chr5	100632845	100633045	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41311.0	NM_027978	71883.0	Mm.260661	NM_027978	ENSMUSG00000029319	Coq2	2310002F18Rik|PHB:PPT	coenzyme Q2 4-hydroxybenzoate polyprenyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-136551117-3	chr6	136551017	136551217	+	905.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019426, intron 1 of 14)	intron (NM_019426, intron 1 of 14)	32266.0	NM_019426	54343.0	Mm.173271	NM_019426	ENSMUSG00000030213	Atf7ip	2610204M12Rik|AM|Mcaf1	activating transcription factor 7 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-22476602-2	chr9	22476502	22476702	+	659.25	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_178415, exon 2 of 23)	5' UTR (NM_178415, exon 2 of 23)	887.0	NM_181316	319845.0	Mm.176725	NM_178415	ENSMUSG00000035919	Bbs9	E130103I17Rik	Bardet-Biedl syndrome 9 (human)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-49250647-2	chr13	49250547	49250747	+	651.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1941.0	NM_028340	66329.0	Mm.34308	NM_025491	ENSMUSG00000021384	Susd3	1700017I11Rik|2810440J20Rik	sushi domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-76780327-4	chr11	76780239	76780439	+	905.491699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007754, exon 21 of 21)	3' UTR (NM_007754, exon 21 of 21)	-16761.0	NM_001356321	53334.0	Mm.20931	NM_016810	ENSMUSG00000010392	Gosr1	AI414660|AI426320|BB145494|GOS-28|GOSRI|GS28	golgi SNAP receptor complex member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-73361305-1	chr8	73361205	73361405	+	549.0	f1_balb.idr	Intergenic	Intergenic	-7765.0	NM_010687	16795.0	Mm.324371	NM_010687	ENSMUSG00000004383	Large1	BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd	LARGE xylosyl- and glucuronyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-43346361-7	chr7	43346252	43346452	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR35B_MM|LTR|ERVL	-4989.0	NM_001271019	233186.0	Mm.290569	NM_145581	ENSMUSG00000039013	Siglecf	Siglec5|mSiglec-F	sialic acid binding Ig-like lectin F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-33110023-4	chr19	33109925	33110125	+	913.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47087.0	NR_039552	100628575.0		NR_039552	ENSMUSG00000106278	Mir3970	mmu-mir-3970|mu-mir-3970	microRNA 3970	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102442822-4	chr12	102442705	102442905	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-2992.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	1.96089426452567	1.15662210405074	2.50407616034355	1.96176372022182	1.62240812152581	1.16235883302388	2.52484762476178	1.70512516885383	-0.313960924394263	0.777659592314104	0.998431161219273
Merged-chr17-34143662-4	chr17	34143542	34143742	+	987.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1774.0	NM_010388	15000.0	Mm.195060	NM_010388	ENSMUSG00000037548	H2-DMb2	H-2Mb2|H2-Mb2	histocompatibility 2, class II, locus Mb2	protein-coding	0.380313416736891	0.148341563811407	0.307774435372965	0.730348028884732	0.133715735218374	0.332990790173155	0.312321783432247	0.426755820417246	-0.832789360052109	0.650110542526596	1
Merged-chr16-92826898-3	chr16	92826807	92827007	+	921.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001111021)	promoter-TSS (NM_001111021)	-833.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-139208439-4	chr4	139208350	139208550	+	984.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	14339.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	4.97272625276032	4.34497183458757	4.37565973489722	4.70233001855288	4.32017722631776	3.75730191985149	3.17091035547987	4.6464376460003	-0.687227001318345	0.12333267373054	0.55050052805767
Merged-chr2-32922109-2	chr2	32922009	32922209	+	587.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_146119, exon 10 of 14)	exon (NM_146119, exon 10 of 14)	39146.0	NM_199302	227738.0	Mm.248037	NM_199302	ENSMUSG00000026792	Lrsam1	-	leucine rich repeat and sterile alpha motif containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27301490-2	chr2	27301390	27301590	+	734.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_133905, intron 4 of 29)	intron (NR_133905, intron 4 of 29)	-54187.0	NM_138665	192166.0	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-40965423-3	chr19	40965322	40965522	+	812.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008528, intron 3 of 16)	intron (NM_008528, intron 3 of 16)	29113.0	NM_008528	17060.0	Mm.9749	NM_008528	ENSMUSG00000061132	Blnk	BASH|Bca|Ly-57|Ly57|Lyw-57|SLP-65	B cell linker	protein-coding	1.3648195058093	0.843211382323272	1.49373959760851	1.82935269462809	1.48033079793964	1.5663722942302	0.83183549180272	0.819120529650894	-0.752549883699233	0.591638719707667	0.969914559899697
Merged-chr11-77785882-4	chr11	77785767	77785967	+	986.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011586, intron 1 of 39)	intron (NM_011586, intron 1 of 39)	8632.0	NM_001291212	360013.0	Mm.341248	NM_011586	ENSMUSG00000000631	Myo18a	MAJN|MyoPDZ|MysPDZ|SP-R210	myosin XVIIIA	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-70849747-1	chr6	70849647	70849847	+	742.0	f0_balb.idr	intron (NM_001313918, intron 1 of 2)	intron (NM_001313918, intron 1 of 2)	5232.0	NM_001313918	13666.0	Mm.247167	NM_010121	ENSMUSG00000031668	Eif2ak3	Pek|Perk	eukaryotic translation initiation factor 2 alpha kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166782640-2	chr2	166782540	166782740	+	545.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11127.0	NM_023815	76367.0	Mm.330796	NM_023815	ENSMUSG00000042854	Trp53rkb	2810408M09Rik|4933401B08Rik|5630401H01Rik|Nori-2|PRPK|Tp53rk|Trp53rk|Trp53tk|mNori-2p	transformation related protein 53 regulating kinase B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-85590278-2	chr6	85590178	85590378	+	745.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145223, intron 1 of 22)	intron (NM_145223, intron 1 of 22)	2747.0	NM_145223	236266.0	Mm.246967	NM_145223	ENSMUSG00000063810	Alms1	bbb	ALMS1, centrosome and basal body associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-80041826-4	chr18	80041717	80041917	+	939.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5078.0	NM_053117	93737.0	Mm.24678	NM_053117	ENSMUSG00000056214	Pard6g	2410049N21Rik|Par6a	par-6 family cell polarity regulator gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-118086087-4	chr10	118086045	118086245	+	916.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1G1|LTR|ERVL-MaLR	-55642.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	1.36729458187268	2.03977250527601	1.74687418397559	1.90983726422184	1.62596957669	1.09820244025311	1.62794994985397	1.58017230576369	-0.94200338224057	0.394422122199293	0.882816975759419
Merged-chr15-73162140-4	chr15	73162042	73162242	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153178, intron 1 of 18)	intron (NM_153178, intron 1 of 18)	22805.0	NM_153178	239528.0	Mm.23095	NM_153178	ENSMUSG00000036698	Ago2	1110029L17Rik|2310051F07Rik|AI225898|AL022874|AW546247|Eif2c2|Gerp95|Gm10365|mKIAA4215	argonaute RISC catalytic subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67743083-3	chr10	67742985	67743185	+	839.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	169577.0	NM_178679	216049.0	Mm.268346	NM_178679	ENSMUSG00000037855	Zfp365	AI839779|AV340892|DBZ|Su48|Znf365|talanin	zinc finger protein 365	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-3301314-4	chr5	3301211	3301411	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42582.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-127978237-4	chr1	127978136	127978336	+	993.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285945, intron 12 of 20)	intron (NM_001285945, intron 12 of 20)	109463.0	NM_178690	226407.0	Mm.489713	NM_178690	ENSMUSG00000036104	Rab3gap1	1700003B17Rik|4732493F09Rik|AL117896|Rab3gap|p130	RAB3 GTPase activating protein subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-32949517-4	chr19	32949449	32949649	+	714.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	191972.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-127335418-4	chr2	127335282	127335482	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010090)	promoter-TSS (NM_010090)	-777.0	NM_010090	13537.0	Mm.4729	NM_010090	ENSMUSG00000027368	Dusp2	PAC1	dual specificity phosphatase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-132311671-4	chr1	132311563	132311763	+	893.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4462.0	NM_001195025	74137.0	Mm.100666	NM_028778	ENSMUSG00000009772	Nuak2	1200013B22Rik|Omphk2|Snark|mKIAA0537	NUAK family, SNF1-like kinase, 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-128658260-2	chr8	128658160	128658360	+	738.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-27394.0	NM_010578	16412.0	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118099646-2	chr9	118099546	118099746	+	557.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026442, intron 2 of 3)	intron (NM_026442, intron 2 of 3)	50550.0	NM_026442	67899.0	Mm.9953	NM_026442	ENSMUSG00000039163	Cmc1	2010110K16Rik|2010312P05Rik|AI596001	COX assembly mitochondrial protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-154942223-2	chr2	154942123	154942323	+	580.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49317.0	NM_026030	67204.0	Mm.377134	NM_026030	ENSMUSG00000074656	Eif2s2	2810026E11Rik|38kDa|AA408636|AA571381|AA986487|AW822225|D2Ertd303e|EIF2|EIF2B	eukaryotic translation initiation factor 2, subunit 2 (beta)	protein-coding	-0.728332140443048	-0.967974407511711	-0.978754504312907	-0.980695997869197	-0.98342737970483	-0.626243422320278	-0.976817978130297	-0.819928975623552	0.886315247734633	0.765895667589267	1
Merged-chr14-79519188-3	chr14	79519135	79519335	+	852.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286411, intron 1 of 8)	intron (NM_001286411, intron 1 of 8)	3561.0	NM_001286411	13709.0	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-125183763-3	chr5	125183652	125183852	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4538.0	NM_001253904	20602.0	Mm.278646	NM_011424	ENSMUSG00000029478	Ncor2	N-CoR|SMRT|SMRTe	nuclear receptor co-repressor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127104726-4	chr7	127104619	127104819	+	856.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13283.0	NM_178901	101602.0	Mm.490357	NM_178901	ENSMUSG00000045165	AI467606	-	expressed sequence AI467606	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94919521-5	chr10	94919479	94919679	+	907.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018797, intron 2 of 30)	intron (NM_018797, intron 2 of 30)	24999.0	NM_018797	54712.0	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-99027055-6	chr6	99027058	99027258	+	723.138916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001197321, intron 4 of 17)	intron (NM_001197321, intron 4 of 17)	1140.0	NM_001197322	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139372285-4	chr5	139372174	139372374	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028469, intron 2 of 4)	CpG	-2529.0	NR_029768	723898.0		NR_029768	ENSMUSG00000065593	Mir339	Mirn339|mir-339|mmu-mir-339	microRNA 339	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-4724537-4	chr7	4724438	4724638	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142792, intron 1 of 5)	intron (NM_001142792, intron 1 of 5)	544.0	NM_001142792	330460.0	Mm.361851	NM_177887	ENSMUSG00000046456	Tmem150b	A630041N19|Tmem224	transmembrane protein 150B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-25519401-4	chr9	25519298	25519498	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 2 of 7)	intron (NM_026189, intron 2 of 7)	37801.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-76943748-4	chr12	76943693	76943893	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361663, intron 3 of 4)	intron (NM_001361663, intron 3 of 4)	18455.0	NM_008558	17187.0	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-67589716-2	chr17	67589616	67589816	+	659.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_155516, intron 2 of 2)	intron (NR_155516, intron 2 of 2)	39616.0	NR_155516	102640031.0	Mm.421441	NR_155516		Gm36201	-	predicted gene, 36201	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-58273911-7	chr13	58273789	58273989	+	874.738098	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019832, intron 1 of 11)	CpG	299.0	NM_019832	56278.0	Mm.296625	NM_019832	ENSMUSG00000021552	Gkap1	42kDa|4933400B15Rik|D13Ertd340e|Gkap42	G kinase anchoring protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-90975692-2	chr1	90975592	90975792	+	588.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6072.0	NM_008998	19329.0	Mm.279780	NM_008998	ENSMUSG00000026304	Rab17	AW413472	RAB17, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-35164478-4	chr4	35164392	35164592	+	791.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7008.0	NM_178061	214944.0	Mm.32968	NM_178061	ENSMUSG00000073910	Mob3b	8430436F23Rik|A430018A01Rik|Mobkl2b	MOB kinase activator 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-174433755-2	chr2	174433655	174433855	+	785.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_022325, intron 2 of 5)	intron (NM_022325, intron 2 of 5)	5284.0	NM_022325	64138.0	Mm.156919	NM_022325	ENSMUSG00000016256	Ctsz	AI787083|AU019819|CTSX|D2Wsu143e	cathepsin Z	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101501368-1	chr7	101501268	101501468	+	790.0	f1_c57bl6.idr	intron (NM_001008548, intron 8 of 30)	intron (NM_001008548, intron 8 of 30)	25992.0	NR_029791	387157.0		NR_029791	ENSMUSG00000065446	Mir139	Mirn139|mir-139|mmu-mir-139	microRNA 139	ncRNA	2.10468380522828	2.72395139936719	1.94258413192027	1.58318339724998	1.8035782404349	2.28467285771275	1.1873285177579	1.59086708860211	-0.988047662567382	0.334861272443109	0.835388696663455
Merged-chr11-8497288-4	chr11	8497194	8497394	+	865.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 16 of 30)	intron (NM_001083587, intron 16 of 30)	167241.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65551199-4	chr9	65551106	65551306	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28881.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34135493-4	chr17	34135391	34135591	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010386, exon 2 of 6)	5' UTR (NM_010386, exon 2 of 6)	-9925.0	NM_010388	15000.0	Mm.195060	NM_010388	ENSMUSG00000037548	H2-DMb2	H-2Mb2|H2-Mb2	histocompatibility 2, class II, locus Mb2	protein-coding	5.44529899316885	5.46662987931791	5.95188570451537	5.93506937497582	5.65202033329175	5.24651484668609	6.25065317218347	5.2920601303888	-0.0534041876257861	0.856305939942143	0.998431161219273
Merged-chr9-52048097-4	chr9	52047959	52048159	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001104617, exon 1 of 11)	5' UTR (NM_001104617, exon 1 of 11)	118.0	NM_001104617	19684.0	Mm.245746	NM_009041	ENSMUSG00000032050	Rdx	AA516625	radixin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107553352-2	chr9	107553252	107553452	+	947.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001243748, intron 1 of 5)	ID_B1|SINE|B4	-1231.0	NM_019713	56289.0	Mm.12091	NM_019713	ENSMUSG00000010067	Rassf1	123F2|AA536941|AU044980|NORE2A|RDA32|REH3P21|Rassf1A|Rassf1B|Rassf1C	Ras association (RalGDS/AF-6) domain family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-27480880-2	chr7	27480780	27480980	+	735.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-6073.0	NM_018820	55942.0	Mm.153684	NM_018820	ENSMUSG00000008384	Sertad1	1110032C13Rik|AV000455|AW456625|Sei-1|Sei1|TRIP-Br1	SERTA domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-118581537-4	chr10	118581437	118581637	+	955.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25012.0	NR_104123	103214.0	Mm.30529	NR_104123	ENSMUSG00000112230	Ifngas1	AI447422|Tmevpg1	Ifng antisense RNA 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-31689789-2	chr2	31689689	31689889	+	753.5	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001283047, exon 1 of 12)	5' UTR (NM_001283047, exon 1 of 12)	1252.0	NM_001283046	11350.0	Mm.1318	NM_009594	ENSMUSG00000026842	Abl1	AI325092|Abl|E430008G22Rik|c-Abl	c-abl oncogene 1, non-receptor tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-108751033-2	chr12	108750933	108751133	+	651.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42278.0	NM_009537	22632.0	Mm.3868	NM_009537	ENSMUSG00000021264	Yy1	AW488674|NF-E1	YY1 transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-82169315-4	chr12	82169223	82169423	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001167983)	promoter-TSS (NM_001167983)	-693.0	NM_001167983	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-142859728-4	chr2	142859615	142859815	+	801.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355123, intron 3 of 26)	intron (NM_001355123, intron 3 of 26)	41749.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-45138715-3	chr9	45138659	45138859	+	864.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001013390)	promoter-TSS (NM_001013390)	-283.0	NM_001013390	399548.0	Mm.335112	NM_001013390	ENSMUSG00000046480	Scn4b	Gm1471	sodium channel, type IV, beta	protein-coding	-1.84362945061595	-1.81329140012928	-1.67810947190254	-1.83000206547234	-1.84149977556685	-1.81130325271815	-1.67603257143677	-1.82865309133977	0.037684011990387	0.991491645451152	1
Merged-chr4-150036089-2	chr4	150035989	150036189	+	710.541626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27066.0	NM_173371	100198.0	Mm.22183	NM_173371	ENSMUSG00000028980	H6pd	AI785303|G6pd1|Gpd-1|Gpd1	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	protein-coding	0.160958118193366	-0.337562587300645	-0.342789167592528	-0.346842470801215	-0.352602332305877	0.554727453434647	-0.341633814052967	-0.346133034878692	1.14901980301973	0.656922431014415	1
Merged-chr17-86445114-4	chr17	86445022	86445222	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011104, intron 2 of 14)	intron (NM_011104, intron 2 of 14)	-157944.0	NR_045435	72104.0	Mm.443401	NR_045435	ENSMUSG00000100738	2010106C02Rik	-	RIKEN cDNA 2010106C02 gene	ncRNA	6.27680589658674	6.4624200343874	6.30850901405369	6.99556951687833	6.88030701619709	6.97498598218775	7.19611957768305	7.0775300804676	0.524129792433264	0.009609404937394	0.105975470349
Merged-chr6-113324076-2	chr6	113323976	113324176	+	541.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001282126, exon 13 of 13)	exon (NM_001282126, exon 13 of 13)	-2900.0	NR_149720	18294.0	Mm.43612	NM_010957	ENSMUSG00000030271	Ogg1	Mmh	8-oxoguanine DNA-glycosylase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-26243288-4	chr7	26243198	26243398	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	-23533.0	NM_001167540	100312477.0	Mm.480246	NM_001167540	ENSMUSG00000046130	Vmn1r184	-	vomeronasal 1 receptor, 184	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-60797165-3	chr18	60797068	60797268	+	934.400024	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6681.0	NM_001042605	16149.0	Mm.439737	NM_010545	ENSMUSG00000024610	Cd74	CLIP|DHLAG|HLADG|Ia-GAMMA|Ii	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	protein-coding	3.07953531321672	3.27886614473184	3.47404735179751	3.31317865807764	1.97868366444837	2.99989545871133	2.78278129148433	2.696068046657	-1.13941636476692	0.0832319299570718	0.44173548907031
Merged-chr18-32694861-4	chr18	32694766	32694966	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045381, intron 4 of 4)	intron (NR_045381, intron 4 of 4)	-120517.0	NM_021367	53603.0	Mm.143716	NM_021367	ENSMUSG00000024379	Tslp	-	thymic stromal lymphopoietin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80180165-4	chr10	80180014	80180214	+	998.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007909, intron 1 of 3)	intron (NM_007909, intron 1 of 3)	632.0	NM_007909	13637.0	Mm.1478	NM_007909	ENSMUSG00000003070	Efna2	CEK7L|Elf1|Epl6|Eplg6|Lerk6	ephrin A2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71485953-4	chr8	71485854	71486054	+	873.395874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001164679, exon 1 of 17)	5' UTR (NM_001164679, exon 1 of 17)	113.0	NM_001164679	382014.0	Mm.260360	NM_001164679	ENSMUSG00000034863	Ano8	BC053460|Tmem16h	anoctamin 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-72304255-2	chr4	72304155	72304355	+	643.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	103011.0	NR_027923	68285.0	Mm.37541	NR_027923		C630043F03Rik	AI851307	RIKEN cDNA C630043F03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32575032-4	chr2	32574960	32575160	+	829.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198191)	promoter-TSS (NM_198191)	-658.0	NM_198191	227733.0	Mm.78923	NM_198191	ENSMUSG00000046854	Pip5kl1	BC028795	phosphatidylinositol-4-phosphate 5-kinase-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-48902200-4	chr11	48902105	48902305	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024230)	promoter-TSS (NM_001024230)	-53.0	NM_001024230	432555.0	Mm.338931	NM_001024230	ENSMUSG00000058163	Gm5431	EG432555|Irgb9b8	predicted gene 5431	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81858764-4	chr15	81858640	81858840	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020507)	promoter-TSS (NM_020507)	-414.0	NM_020507	57259.0	Mm.323595	NM_020507	ENSMUSG00000048546	Tob2	2900090N22Rik|4930545K18Rik|AV071822|mKIAA1663	transducer of ERBB2, 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-118470634-4	chr7	118470524	118470724	+	698.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21351.0	NM_001033380	319622.0	Mm.323386	NM_001033380	ENSMUSG00000095115	Itpripl2	C130081G24|E030018N11Rik	inositol 1,4,5-triphosphate receptor interacting protein-like 2	protein-coding	3.82200890658148	3.80591570022598	3.9519663998069	4.06603871590349	3.74438549789343	3.97874034932899	2.54927764013656	3.04056153288158	-0.687848348612019	0.201266360669253	0.686020964576619
Merged-chr9-107739049-2	chr9	107738949	107739149	+	924.3333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28574.0	NM_011349	20350.0	Mm.12903	NM_011349	ENSMUSG00000034684	Sema3f	Sema4|Semak	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-18558963-4	chr17	18558854	18559054	+	836.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPLTR3-int|LTR|ERVK	-22773.0	NM_001104547	433070.0	Mm.215962	NM_001104547	ENSMUSG00000091679	Vmn2r96	EG433070	vomeronasal 2, receptor 96	protein-coding	3.34716977466829	4.23683292517477	3.89111396330418	3.00706422773	2.35133590980193	3.62781573371379	3.97746834261412	1.59092801034286	-0.743701782841558	0.30298754030009	0.805445607500844
Merged-chr7-30322404-4	chr7	30322319	30322519	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033140)	promoter-TSS (NM_001033140)	-44.0	NM_001033140	68332.0	Mm.6844	NM_001033140	ENSMUSG00000074211	Sdhaf1	0610010E21Rik|AI430885|AW490662|Lyrm8	succinate dehydrogenase complex assembly factor 1	protein-coding	7.43476587179518	7.69287195077202	7.26767391738497	7.42442125963691	7.37572413339288	7.7980151870814	7.45402579335527	7.5425080635666	0.0900387382478249	0.564537045818196	0.960753698599198
Merged-chr18-79288961-1	chr18	79288861	79289061	+	583.0	f0_balb.idr	Intergenic	Intergenic	-179570.0	NM_053099	240427.0	Mm.312871	NM_053099	ENSMUSG00000024548	Setbp1	C130092E12|Seb|mKIAA0437	SET binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-70021834-3	chr10	70021756	70021956	+	725.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_170729, intron 40 of 40)	intron (NM_170729, intron 40 of 40)	-75265.0	NM_001111121	76551.0	Mm.281741	NM_001111121	ENSMUSG00000048701	Ccdc6	2810012H18Rik|AA536681|AA960498|AW061011	coiled-coil domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59799438-3	chr15	59799339	59799539	+	967.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4480.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101361275-4	chr7	101361191	101361391	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040111, intron 1 of 33)	intron (NM_001040111, intron 1 of 33)	13222.0	NM_001040111	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	4.64010311062463	3.64584946331822	3.95229776836713	4.22056766938991	4.53409838777937	4.80752827944822	4.47471331498453	4.53509403867277	0.529875116043764	0.190749385367452	0.669546561020494
Merged-chr7-130847399-4	chr7	130847323	130847523	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18301.0	NM_133942	101476.0	Mm.323554	NM_133942	ENSMUSG00000040268	Plekha1	AA960558|C920009D07Rik|TAPP1	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-49982533-2	chr11	49982433	49982633	+	948.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-42798.0	NM_021540	59044.0	Mm.359004	NM_021540	ENSMUSG00000020376	Rnf130	2510042A13Rik|G1RZFP|G1rp|GOLIATH|GP	ring finger protein 130	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-86142082-2	chr15	86141978	86142178	+	694.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_145475, intron 12 of 12)	intron (NM_145475, intron 12 of 12)	-43650.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	-0.282468732086131	-0.627176777422274	-0.818234190330666	-0.820436758129433	-0.682297351220442	-0.812322953782224	-0.817603294626407	-0.820052466664598	-2.08194727620993	0.460655161495088	1
Merged-chr8-67950438-4	chr8	67950334	67950534	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177698, intron 3 of 14)	intron (NM_177698, intron 3 of 14)	24140.0	NM_177698	234353.0	Mm.32525	NM_027626	ENSMUSG00000030465	Psd3	4931420C21Rik|AI661273|BC003498|D430018P08|EFA6D	pleckstrin and Sec7 domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-136668945-3	chr3	136668870	136669070	+	743.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1096.0	NM_008913	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-43702605-4	chr10	43702469	43702669	+	840.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43589.0	NR_040581	69443.0	Mm.484042	NR_040581	ENSMUSG00000111422	1700027J07Rik	-	RIKEN cDNA 1700027J07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91098824-4	chr2	91098749	91098949	+	886.241699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011355, intron 1 of 4)	intron (NM_011355, intron 1 of 4)	2171.0	NM_011355	20375.0	Mm.1302	NM_011355	ENSMUSG00000002111	Spi1	Dis-1|Dis1|PU.1|Sfpi-1|Sfpi1|Spi-1|Tcfpu1|Tfpu.1	spleen focus forming virus (SFFV) proviral integration oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69690997-2	chr11	69690897	69691097	+	589.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011614, intron 5 of 6)	intron (NM_011614, intron 5 of 6)	5101.0	NM_011614	21944.0	Mm.8983	NM_011614	ENSMUSG00000097328	Tnfsf12	Apo3l|Dr3l|Dr3lg|Tweak	tumor necrosis factor (ligand) superfamily, member 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-149099769-4	chr4	149099637	149099837	+	992.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019781)	promoter-TSS (NM_019781)	75.0	NM_019781	56273.0	Mm.184172	NM_019781	ENSMUSG00000028975	Pex14	Pex14p|R75137	peroxisomal biogenesis factor 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126487276-4	chr7	126487162	126487362	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163713)	promoter-TSS (NM_001163713)	-93.0	NM_172745	233870.0	Mm.197829	NM_172745	ENSMUSG00000073838	Tufm	2300002G02Rik|C76308|C76389|EF-TuMT|EFTU	Tu translation elongation factor, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-69332299-4	chr12	69332153	69332353	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025441, intron 16 of 32)	PB1D9|SINE|Alu	24923.0	NM_025441	66244.0	Mm.46705	NM_025441	ENSMUSG00000020982	Nemf	1500011I12Rik|4933405E14Rik|Sdccag1	nuclear export mediator factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-18954728-2	chr8	18954628	18954828	+	928.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-3753.0	NM_001113350	319581.0	Mm.111354	NM_176951	ENSMUSG00000039814	Xkr5	5430438H03Rik|XRG5	X-linked Kx blood group related 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-89093314-3	chr11	89093227	89093427	+	858.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001033266)	TTS (NM_001033266)	19486.0	NM_001033266	217071.0	Mm.342127	NM_001033266	ENSMUSG00000072553	Gm525	-	predicted gene 525	protein-coding	1.95394570825855	2.39921837514403	1.6953442363636	1.80575506613947	1.7361484753611	2.07106875803981	2.00509418345208	2.17002217198656	0.0273096962163704	0.976620375123052	0.998431161219273
Merged-chr6-129236018-4	chr6	129235892	129236092	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040268, intron 2 of 3)	MLTR14|LTR|ERV1	2053.0	NR_040265	76432.0	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-86887770-4	chr12	86887665	86887865	+	960.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2951.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-106946340-2	chr13	106946240	106946440	+	883.099976	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025447)	promoter-TSS (NM_025447)	-789.0	NM_025447	66254.0	Mm.9563	NM_025447	ENSMUSG00000021692	Dimt1	1500031M22Rik|AV111347|Dimt1l	DIM1 dimethyladenosine transferase 1-like (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-66951537-2	chr10	66951437	66951637	+	731.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31153.0	NR_138561	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-66339155-2	chr6	66339055	66339255	+	793.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	66650.0	NR_136927	102633773.0	Mm.272086	NR_136927	ENSMUSG00000107653	Gm31520	-	sterol-C5-desaturase pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-155309421-8	chr2	155309329	155309529	+	987.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004721, intron 7 of 11)	intron (NM_001004721, intron 7 of 11)	33065.0	NR_046364	66734.0	Mm.196239	NM_025735	ENSMUSG00000027602	Map1lc3a	1010001H21Rik|4922501H04Rik|LC3|LC3a	microtubule-associated protein 1 light chain 3 alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-110385529-2	chr9	110385429	110385629	+	674.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001103162)	TTS (NM_001103162)	22681.0	NM_001081043	104831.0	Mm.335477	NM_001081043	ENSMUSG00000036057	Ptpn23	AI462446|PTP-TD14	protein tyrosine phosphatase, non-receptor type 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-40580491-1	chr6	40580391	40580591	+	615.333313	f0_balb.idr	intron (NM_001038604, intron 5 of 6)	B4A|SINE|B4	5314.0	NM_021364	23845.0	Mm.103765	NM_021364	ENSMUSG00000029915	Clec5a	Clecsf5|Ly100|MDL-1|Mdl1	C-type lectin domain family 5, member a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123820710-3	chr5	123820596	123820796	+	932.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042421, intron 63 of 63)	intron (NM_001042421, intron 63 of 63)	44820.0	NM_030701	80885.0	Mm.440567	NM_030701	ENSMUSG00000045502	Hcar2	Gpr109a|Gpr109b|HM74|Niacr1|PUMA-G|Pumag|mHM74b	hydroxycarboxylic acid receptor 2	protein-coding	0.711529973589791	0.868820435727895	0.255293727406089	0.41337879027584	0.243426631583521	0.759167773122332	0.435697554669482	0.251235539858429	-0.952752121341072	0.606126914836599	1
Merged-chr2-32752293-2	chr2	32752193	32752393	+	638.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013781, intron 9 of 11)	intron (NM_013781, intron 9 of 11)	-4941.0	NR_045485	30933.0	Mm.200695	NM_152800	ENSMUSG00000009563	Tor2a	Prosalusin	torsin family 2, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-94322690-2	chr11	94322590	94322790	+	574.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_155068)	promoter-TSS (NR_155068)	-727.0	NM_001361573	67684.0	Mm.30927	NM_026313	ENSMUSG00000020863	Luc7l3	3300001P08Rik|Luc7a	LUC7-like 3 (S. cerevisiae)	protein-coding	-0.499940950918087	-0.487518524828365	0.0891561271406926	-0.494726023626598	-0.499164980458282	-0.486601867615524	0.100277611126392	-0.494177430718284	0.0410194320726077	0.98816738256539	1
Merged-chr6-142785516-4	chr6	142785420	142785620	+	861.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001145390)	TTS (NM_001145390)	18946.0	NM_001145390	330440.0	Mm.484618	NM_001033417	ENSMUSG00000048473	Sult6b2	Gm766	sulfotransferase family 6B, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-93167478-1	chr10	93167378	93167578	+	548.0	f0_balb.idr	intron (NM_146239, intron 1 of 16)	B4A|SINE|B4	4693.0	NR_035452	100316689.0		NR_035452	ENSMUSG00000089214	Mir1931	mir-1931|mmu-mir-1931	microRNA 1931	ncRNA	1.75831699759627	2.58524052055011	2.40053066869013	1.25866045954865	1.77226589151699	2.39515274077972	2.41974639663172	2.00177928530193	0.15312471178638	0.87479056097843	0.998431161219273
Merged-chr11-80177737-2	chr11	80177637	80177837	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172133, intron 10 of 10)	intron (NM_172133, intron 10 of 10)	-6135.0	NM_028019	71956.0	Mm.22985	NM_028019	ENSMUSG00000020707	Rnf135	0610037N03Rik|2410006N06Rik	ring finger protein 135	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-78069271-4	chr10	78069190	78069390	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015790)	promoter-TSS (NM_015790)	-78.0	NM_015790	50723.0	Mm.17819	NM_015790	ENSMUSG00000000732	Icosl	AU044799|B7-H2|B7RP-1|B7h|BG071784|GI50|GL50|GL50-B|ICOS-L|Icoslg|LICOS|Ly115l|mKIAA0653	icos ligand	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-94851903-3	chr3	94851803	94852003	+	803.483337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001165948, intron 1 of 18)	intron (NM_001165948, intron 1 of 18)	14336.0	NM_172683	229584.0	Mm.274787	NM_172683	ENSMUSG00000038902	Pogz	9530006B08Rik	pogo transposable element with ZNF domain	protein-coding	0.251776627567568	0.10967350853757	0.0913074858479861	-0.0605019305793944	0.259124681227597	0.113817301199701	0.0953561179880903	-0.0600308504906412	0.0407872045483039	0.983499453477805	1
Merged-chr16-31935425-4	chr16	31935330	31935530	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172822, intron 1 of 2)	intron (NM_172822, intron 1 of 2)	1579.0	NM_172822	239827.0	Mm.440388	NM_172822	ENSMUSG00000045625	Pigz	F630022B06Rik	phosphatidylinositol glycan anchor biosynthesis, class Z	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-47395633-4	chr19	47395515	47395715	+	958.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008018, intron 3 of 14)	intron (NM_008018, intron 3 of 14)	68796.0	NM_001164717	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-41615614-3	chr13	41615507	41615707	+	721.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163572, intron 1 of 2)	intron (NM_001163572, intron 1 of 2)	9391.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-44456210-4	chr17	44456106	44456306	+	849.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	267634.0	NM_172621	224796.0	Mm.37666	NM_172621	ENSMUSG00000023959	Clic5	5730531E12Rik|B330005L24|Gm322|jbg|nmf318	chloride intracellular channel 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-26687407-3	chr1	26687259	26687459	+	792.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001033764, exon 1 of 2)	exon (NM_001033764, exon 1 of 2)	101.0	NM_001033764	210940.0	Mm.297614	NM_001033764	ENSMUSG00000073722	4931408C20Rik	-	RIKEN cDNA 4931408C20 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140612307-2	chr5	140612207	140612407	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008494, exon 3 of 8)	exon (NM_008494, exon 3 of 8)	4966.0	NM_008494	16848.0	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131446739-4	chr1	131446637	131446837	+	956.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081011, intron 2 of 22)	intron (NM_001081011, intron 2 of 22)	80624.0	NM_001081011	14270.0	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	3.60592906234152	3.80528085636139	3.7578783447534	4.28723975006575	3.63547542175272	3.83264498444858	3.78659728662969	4.21332928005965	-0.00836590716164268	0.985814524513951	0.998431161219273
Merged-chr11-68032612-2	chr11	68032512	68032712	+	560.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_018768, intron 6 of 7)	intron (NM_018768, intron 6 of 7)	66154.0	NM_018768	55943.0	Mm.3973	NM_018768	ENSMUSG00000020903	Stx8	0610007H08Rik|1110002H11Rik|4930571E13Rik|CARB	syntaxin 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-96087042-2	chr16	96086925	96087125	+	577.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-4597.0	NM_145125	93871.0	Mm.240871	NM_145125	ENSMUSG00000022914	Brwd1	5330419I02Rik|D530019K20Rik|G1-403-16|Wdr9|repro5	bromodomain and WD repeat domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-106644609-4	chr7	106644463	106644663	+	896.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001277179)	promoter-TSS (NM_001277179)	82.0	NM_001277179	434223.0	Mm.276443	NM_001277179		Gm1966	-	predicted gene 1966	protein-coding	1.00022329644272	1.52903893118931	0.784323798629574	1.65487429630514	0.879664332004104	0.585999607678249	0.573633696383478	0.562900558317441	-3.31636196797106	0.0432014118829489	0.298119558917727
Merged-chr9-22050764-2	chr9	22050664	22050864	+	989.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_010487, intron 1 of 6)	CpG	1259.0	NM_010487	15571.0	Mm.390167	NM_010487	ENSMUSG00000003410	Elavl3	2600009P04Rik|Huc|PLE21|mHuC	ELAV like RNA binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101223194-4	chr15	101223059	101223259	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045328, intron 2 of 2)	MIR|SINE|MIR	962.0	NR_045326	380977.0	Mm.399924	NR_045326	ENSMUSG00000097915	A330009N23Rik	-	RIKEN cDNA A330009N23 gene	ncRNA	1.15191805944694	1.4962072919624	1.76277334184318	2.73561099591202	1.62650733965564	1.02104684718404	1.24969430201013	1.95644772992253	-1.18199652615094	0.306418793921445	0.806865344318695
Merged-chr4-32361613-2	chr4	32361513	32361713	+	965.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR16|LTR|ERVK	-55822.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-24640476-4	chr16	24640371	24640571	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 5 of 12)	intron (NM_178665, intron 5 of 12)	-81384.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122268729-3	chr5	122268626	122268826	+	853.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4266.0	NM_001039153	654470.0	Mm.28804	NM_001039153	ENSMUSG00000038593	Tctn1	G730031O11Rik|Tect1	tectonic family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-71048348-4	chr12	71048256	71048456	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081195, intron 11 of 23)	intron (NM_001081195, intron 11 of 23)	32389.0	NM_001081195	238247.0	Mm.241601	NM_001081195	ENSMUSG00000048118	Arid4a	A630009N03|A630067N03Rik|Rbbp1	AT rich interactive domain 4A (RBP1-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-121286573-2	chr9	121286473	121286673	+	895.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-9401.0	NM_177589	209012.0	Mm.371804	NM_177589	ENSMUSG00000040936	Ulk4	4932415A06Rik|A730098P15	unc-51-like kinase 4	protein-coding	-1.03787445423696	-0.828439209269094	-1.02990738401325	-1.03419657188337	-1.0373273429507	-1.01525942842684	-0.433779522879223	-1.033809545283	1.85081744078225	0.55532032367009	1
Merged-chr18-15140464-4	chr18	15140357	15140557	+	944.1083369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134112, intron 1 of 4)	intron (NM_134112, intron 1 of 4)	10989.0	NM_134112	106931.0	Mm.329299	NM_134112	ENSMUSG00000036225	Kctd1	4933402K10Rik|AI661543|AW553000	potassium channel tetramerisation domain containing 1	protein-coding	3.83132751576074	4.08605121175924	4.13567782623397	3.91084790696733	3.86176638130745	2.7079120928983	3.84793816937157	4.2024672494449	-0.313635265050486	0.529644919005732	0.949754172978189
Merged-chr13-34700192-2	chr13	34700092	34700292	+	551.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39450.0	NM_138746	108161.0	Mm.41991	NM_138746	ENSMUSG00000038246	Fam50b	D0H6S2654E|X5L|XAP-5-like	family with sequence similarity 50, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-9369560-2	chr13	9369460	9369660	+	852.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081426, intron 1 of 36)	intron (NM_001081426, intron 1 of 36)	93035.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-157532750-2	chr3	157532650	157532850	+	666.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_152231, intron 1 of 1)	L1MEf|LINE|L1	1340.0	NR_152231	381498.0	Mm.402095	NR_152231	ENSMUSG00000105834	4930592C13Rik	Gm1657|Gm43159	RIKEN cDNA 4930592C13 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132264278-2	chr4	132264178	132264378	+	619.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2729.0	NM_001122992	56809.0	Mm.103489	NM_020273	ENSMUSG00000028901	Gmeb1	1110050A04Rik|AI256615|AI481278	glucocorticoid modulatory element binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55761288-2	chr14	55761188	55761388	+	626.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020490)	promoter-TSS (NM_020490)	-140.0	NM_020490	57260.0	Mm.159670	NM_020490	ENSMUSG00000040432	Ltb4r2	5830462O07Rik|BLT2|LTB4-R 2|LTB4-R-2|LTB4-R2	leukotriene B4 receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-33452354-3	chr2	33452246	33452446	+	735.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_027947, exon 4 of 4)	3' UTR (NM_027947, exon 4 of 4)	16186.0	NM_027947	71834.0	Mm.44186	NM_027947	ENSMUSG00000026788	Zbtb43	1700010E06Rik|Zfp297b|mKIAA0414	zinc finger and BTB domain containing 43	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-8626350-2	chr11	8626250	8626450	+	863.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 1 of 30)	intron (NM_001083587, intron 1 of 30)	38185.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-87663062-2	chr17	87662962	87663162	+	680.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MuRRS4-int|LTR|ERV1	-9495.0	NM_008628	17685.0	Mm.4619	NM_008628	ENSMUSG00000024151	Msh2	AI788990	mutS homolog 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-87885823-2	chr14	87885723	87885923	+	748.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	469240.0	NM_001253755	219249.0	Mm.35168	NM_172605	ENSMUSG00000022019	Tdrd3	4732418C03Rik|6720468N18	tudor domain containing 3	protein-coding	-2.18138529563533	-2.15523716995652	-2.1631445789866	-2.16963996020037	-2.05513010215571	-2.15352360143315	-2.16135451490766	-2.16847729006863	0.759018020146679	0.829933115115583	1
Merged-chr2-75762042-2	chr2	75761942	75762142	+	580.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger7|DNA|TcMar-Tigger	-57379.0	NM_010902	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3662514-2	chr12	3662414	3662614	+	611.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162465, intron 8 of 17)	B3|SINE|B2	89530.0	NM_007886	13528.0	Mm.286202	NM_007886	ENSMUSG00000071454	Dtnb	-	dystrobrevin, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-66114801-4	chr5	66114708	66114908	+	933.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127382, intron 2 of 7)	intron (NM_001127382, intron 2 of 7)	-16629.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	1.67820456406976	1.77340932251465	0.999756490994331	1.52677081374612	1.58340869334322	1.64132021174412	2.30693574709367	0.98698295503265	0.608806043930555	0.613818837903308	0.977250439470701
Merged-chr15-78754057-5	chr15	78753936	78754136	+	771.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19409.0	NM_008595	17305.0	Mm.149235	NM_008595	ENSMUSG00000018169	Mfng	AW546563	MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-148746944-4	chr5	148746859	148747059	+	893.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR44D|LTR|ERVK	5119.0	NR_028285	70138.0	Mm.417834	NR_028285	ENSMUSG00000086494	2210417A02Rik	AV081004	RIKEN cDNA 2210417A02 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-27176732-2	chr7	27176632	27176832	+	568.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_037283)	promoter-TSS (NR_037283)	-639.0	NR_037283	100526505.0		NR_037283	ENSMUSG00000093348	Mir3101	mir-3101|mmu-mir-3101	microRNA 3101	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34309952-3	chr17	34309895	34310095	+	842.25	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010382, intron 2 of 5)	B3A|SINE|B2	4128.0	NM_010382	14969.0	Mm.22564	NM_010382	ENSMUSG00000060586	H2-Eb1	Eb|H-2Eb|H2Eb|Ia-4|Ia4	histocompatibility 2, class II antigen E beta	protein-coding	4.09058648074561	4.85243634304361	2.25662661044633	3.09714969107672	3.66841070108728	3.08821644809762	4.34787768999248	2.99880728809052	-0.382327029296446	0.563033003272642	0.960362415684079
Merged-chr7-24448950-1	chr7	24448850	24449050	+	665.0	f0_balb.idr	Intergenic	Intergenic	-3268.0	NM_199013	210145.0	Mm.33811	NM_199013	ENSMUSG00000062028	Irgc1	F630044M05Rik|Gm1102|Gm474|Ifgge|Iigp5|Irgc	immunity-related GTPase family, cinema 1	protein-coding	0.388759504303802	0.0571566708559307	0.0524503227316651	0.442327917720172	0.396819355616986	0.0582210142503887	0.482939850912263	0.0494666099620434	0.108951453644419	0.958574719763439	1
Merged-chr5-140641012-4	chr5	140640856	140641056	+	884.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001308040, intron 1 of 12)	intron (NM_001308040, intron 1 of 12)	8075.0	NM_001308040	78339.0	Mm.28947	NM_175274	ENSMUSG00000036565	Ttyh3	2900029G13Rik|AI414930|TTY3|mTTY3	tweety family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-31767003-4	chr5	31766899	31767099	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144541, intron 3 of 11)	intron (NM_144541, intron 3 of 11)	68949.0	NM_144541	107976.0	Mm.482126	NM_144541	ENSMUSG00000052139	Babam2	6030405P19Rik|AI429776|B830038C02Rik|Bre	BRISC and BRCA1 A complex member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-55448329-2	chr11	55448224	55448424	+	845.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_009720, intron 3 of 3)	L1Md_F2|LINE|L1	12884.0	NM_009720	11927.0	Mm.217759	NM_009720	ENSMUSG00000018585	Atox1	AI256639|Atx1	antioxidant 1 copper chaperone	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-149088717-4	chr3	149088616	149088816	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-134081.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-55957999-4	chr7	55957883	55958083	+	988.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023647, intron 1 of 6)	intron (NM_023647, intron 1 of 6)	4510.0	NM_001256133	93790.0	Mm.37249	NM_023647	ENSMUSG00000030452	Nipa2	2600017P10Rik|3830408P04Rik|AB041581	non imprinted in Prader-Willi/Angelman syndrome 2 homolog (human)	protein-coding	2.61300572984249	2.98250118737157	1.62602344031878	3.48109448670721	3.07453890491531	4.25422466086144	4.76003674252459	3.71213520932779	1.87192590092283	0.00463673673035784	0.063238617895581
Merged-chr10-94576096-4	chr10	94576005	94576205	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177026)	promoter-TSS (NM_177026)	-158.0	NM_177026	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-3667869-2	chr8	3667769	3667969	+	630.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026985, intron 5 of 6)	B4A|SINE|B4	2107.0	NM_026985	69189.0	Mm.175176	NM_026985	ENSMUSG00000013974	Mcemp1	1810033B17Rik	mast cell expressed membrane protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-41109067-1	chr9	41108967	41109167	+	642.0	f1_balb.idr	intron (NM_176860, intron 1 of 13)	MIRc|SINE|MIR	-29561.0	NM_001357412	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	0.566331486458662	1.26117741656824	0.60221242482289	1.62436222302877	1.09475675723896	2.05116970956831	0.605927861667086	0.591340030284989	0.511498155455255	0.747033879319827	0.998431161219273
Merged-chr6-146616794-3	chr6	146616699	146616899	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026281, intron 6 of 11)	MTE2b|LTR|ERVL-MaLR	17793.0	NM_026281	67623.0	Mm.278037	NM_026281	ENSMUSG00000040234	Tm7sf3	2010003B14Rik|NARP1	transmembrane 7 superfamily member 3	protein-coding	2.38915108910255	1.55489229485099	2.66262142540901	1.40060172113302	3.60488852890586	3.91911759749843	5.67221865980321	4.92670359269774	4.02692014021205	0.000161022390142735	0.00454932489073596
Merged-chr4-154910192-1	chr4	154910092	154910292	+	557.0	f1_balb.idr	Intergenic	Intergenic	-11149.0	NM_025582	66469.0	Mm.41868	NM_025582	ENSMUSG00000029059	Fam213b	2810405K02Rik|AI836168|PM/PGFS	family with sequence similarity 213, member B	protein-coding	1.0231420421025	0.557510453054743	1.4126096145617	0.52899820684571	0.510638051190888	2.06509677288558	0.545154011364153	1.10777670529166	1.07587113234349	0.502754194152504	0.939633458693796
Merged-chr2-165062675-3	chr2	165062573	165062773	+	846.9166869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_170704, exon 3 of 9)	exon (NM_170704, exon 3 of 9)	7037.0	NM_011611	21939.0	Mm.271833	NM_011611	ENSMUSG00000017652	Cd40	AI326936|Bp50|GP39|HIGM1|IGM|IMD3|T-BAM|TRAP|Tnfrsf5|p50	CD40 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46765137-10	chr8	46765042	46765242	+	893.1749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152560, intron 1 of 7)	intron (NR_152560, intron 1 of 7)	25397.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69785017-4	chr11	69784913	69785113	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_029348)	TTS (NM_029348)	10924.0	NM_009601	11443.0	Mm.86425	NM_009601	ENSMUSG00000041189	Chrnb1	Achr-2|Acrb	cholinergic receptor, nicotinic, beta polypeptide 1 (muscle)	protein-coding	4.01990346134369	4.11056920313076	3.75119631128766	4.22305627902738	4.28324968699286	4.39372648350296	4.31384048669102	4.01735451156163	0.295726431247971	0.477670545375377	0.927980290875356
Merged-chr3-16087160-2	chr3	16087060	16087260	+	735.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1VL2|LINE|L1	-80828.0	NM_001081687	381484.0	Mm.217376	NM_001081687	ENSMUSG00000078780	Gm5150	-	predicted gene 5150	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-51083451-4	chr14	51083365	51083565	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7612.0	NM_001161731	11727.0	Mm.202665	NM_007447	ENSMUSG00000072115	Ang	AI385586|Ang1|Rnase5|Rnase5a	angiogenin, ribonuclease, RNase A family, 5	protein-coding	5.37745632934123	4.02751011624485	5.6050285867392	5.65555911651017	5.17781260429587	3.76774567545515	5.18172348722064	4.89788200765808	-0.513000593723324	0.21144749021044	0.700512509175108
Merged-chr18-68494840-2	chr18	68494740	68494940	+	593.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65520.0	NM_001301372	17200.0	Mm.426053	NM_008560	ENSMUSG00000045569	Mc2r	ACTH-R|ACTHR|MC2-R	melanocortin 2 receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-55464439-6	chr13	55464411	55464611	+	815.444458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001030296, intron 1 of 2)	CpG	244.0	NM_001030296	432763.0	Mm.315457	NM_001030296	ENSMUSG00000034686	Prr7	XM_484263	proline rich 7 (synaptic)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-31477130-2	chr15	31477030	31477230	+	568.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172606, intron 19 of 25)	intron (NM_172606, intron 19 of 25)	-23441.0	NM_145852	252967.0	Mm.436668	NM_145852	ENSMUSG00000022236	Ropn1l	ASP|AV047578|Akapasp	ropporin 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64243129-2	chr5	64243029	64243229	+	617.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 1 of 18)	intron (NM_001289514, intron 1 of 18)	12772.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-61384243-2	chr9	61384143	61384343	+	570.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083928, intron 4 of 19)	intron (NM_001083928, intron 4 of 19)	11877.0	NM_001083927	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-70618953-1	chr13	70618853	70619053	+	546.0	f0_balb.idr	intron (NM_144837, intron 6 of 18)	intron (NM_144837, intron 6 of 18)	18681.0	NM_144837	218333.0	Mm.139738	NM_144837	ENSMUSG00000034525	Ice1	C77245|mKIAA0947	interactor of little elongation complex ELL subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-94012184-4	chr8	94012103	94012303	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011787, intron 1 of 13)	CpG	437.0	NM_011787	23802.0	Mm.34641	NM_011787	ENSMUSG00000031751	Amfr	gp78	autocrine motility factor receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-106441031-2	chr6	106440926	106441126	+	572.5	f0_balb.idr|f1_c57bl6.idr	intron (NM_001109749, intron 8 of 25)	intron (NM_001109749, intron 8 of 25)	308011.0	NM_008370	16192.0	Mm.3448	NM_008370	ENSMUSG00000005364	Il5ra	CD125|CDw125|Il5r	interleukin 5 receptor, alpha	protein-coding	0.936290767100604	0.447223409512613	1.34621609051074	0.43112423628091	0.947454491498178	0.449253281402517	0.942086829408691	0.432358652552154	-0.679751888886878	0.702125105572544	1
Merged-chr18-36493706-3	chr18	36493614	36493814	+	899.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22091.0	NM_010415	15200.0	Mm.289681	NM_010415	ENSMUSG00000024486	Hbegf	AW047313|Dtr|Dts|Hegfl	heparin-binding EGF-like growth factor	protein-coding	1.28845455590747	0.47078506620008	2.08019868501679	1.02286335845117	0.425049295997238	0.474216082295361	0.70796002254864	0.445150133276637	-4.18733854822598	0.0125654695536967	0.128007268028811
Merged-chr7-25006814-3	chr7	25006718	25006918	+	771.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290469)	promoter-TSS (NM_001290469)	-881.0	NM_001290469	232975.0	Mm.44101	NM_144921	ENSMUSG00000040907	Atp1a3	Atpa-2	ATPase, Na+/K+ transporting, alpha 3 polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-31187376-5	chr8	31187331	31187531	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286424)	promoter-TSS (NM_001286424)	100.0	NM_001286425	171167.0	Mm.334477	NM_134161	ENSMUSG00000046152	Fut10	fuc-TX|fut10A	fucosyltransferase 10	protein-coding	5.5272927072408	4.80476085515613	4.88532574140436	5.63856346559289	5.83701680557032	4.9377666531391	5.04424971510486	5.49621372397376	0.13228967968477	0.690113868332542	0.996533206832645
Merged-chr8-106413109-2	chr8	106413009	106413209	+	751.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2230.0	NM_011764	22751.0	Mm.295582	NM_011764	ENSMUSG00000031907	Zfp90	6430515L01Rik|KRAB17|NK10|Zfp64|Zfp83|mKIAA1954	zinc finger protein 90	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135884447-2	chr4	135884347	135884547	+	633.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10601.0	NM_026383	52830.0	Mm.29159	NM_026383	ENSMUSG00000028675	Pnrc2	0610011E17Rik|D4Bwg0593e	proline-rich nuclear receptor coactivator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-101153113-2	chr4	101153013	101153213	+	637.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_183024)	TTS (NM_183024)	84075.0	NM_183024	242570.0	Mm.185636	NM_183024	ENSMUSG00000035275	Raver2	A430091O22Rik	ribonucleoprotein, PTB-binding 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-66002155-3	chr18	66002076	66002276	+	765.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027400, intron 1 of 13)	intron (NM_027400, intron 1 of 13)	459.0	NM_027400	70361.0	Mm.290857	NM_027400	ENSMUSG00000041891	Lman1	2610020P13Rik|AI326273|AU043785|C730041J05|ERGIC53|F5F8D|MCFD1|MR60|P58|gp58	lectin, mannose-binding, 1	protein-coding	2.44975401103891	2.95822721104774	3.03929835219408	2.9571084943504	2.22997928294952	2.63336720483268	2.67120585500204	2.69909552479014	-0.600357784700984	0.395312345390777	0.882909751294042
Merged-chr6-83376844-2	chr6	83376744	83376944	+	689.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_183138, exon 6 of 11)	exon (NM_183138, exon 6 of 11)	24258.0	NR_105793	102465194.0		NR_105793	ENSMUSG00000099045	Mir6374	Gm27292|mmu-mir-6374	microRNA 6374	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120619308-2	chr11	120619208	120619408	+	646.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_153056, intron 9 of 9)	intron (NM_153056, intron 9 of 9)	-1363.0	NM_001347615	68671.0	Mm.21439	NM_024229	ENSMUSG00000025137	Pcyt2	1110033E03Rik|ET	phosphate cytidylyltransferase 2, ethanolamine	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-30123462-4	chr16	30123364	30123564	+	902.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME2|LINE|L1	58107.0	NM_008235	15205.0	Mm.390859	NM_008235	ENSMUSG00000022528	Hes1	Hry|bHLHb39	hes family bHLH transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-39621767-2	chr8	39621667	39621867	+	707.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113326, intron 4 of 9)	intron (NM_001113326, intron 4 of 9)	20911.0	NM_031195	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	-0.782390101874155	-0.14214928202986	-0.439164649644749	-0.778056364136865	-0.781745375115801	-0.771124917157624	-0.774700250864294	-0.777600363199559	-3.19422132273467	0.270259555383638	1
Merged-chr12-32692033-2	chr12	32691933	32692133	+	591.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-128302.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-87107367-4	chr17	87107268	87107468	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019654)	promoter-TSS (NM_019654)	-311.0	NM_019654	56468.0	Mm.126885	NM_019654	ENSMUSG00000037104	Socs5	1810018L08Rik|Cish5|mKIAA0671	suppressor of cytokine signaling 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3628208-2	chr4	3628107	3628307	+	720.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-28299.0	NR_040643	70143.0	Mm.417835	NR_040643	ENSMUSG00000085394	2210414B05Rik	-	RIKEN cDNA 2210414B05 gene	ncRNA	1.05323861671414	0.6666935292993	1.38928553164236	1.34030816082665	0.634874714337644	0.669153583913938	1.40305790124247	0.991146077057247	-0.768692663563216	0.616876333693289	0.977454074438997
Merged-chr13-41607813-4	chr13	41607706	41607906	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163572, intron 1 of 2)	intron (NM_001163572, intron 1 of 2)	1590.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-94536509-4	chr6	94536414	94536614	+	934.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026255, intron 5 of 9)	intron (NM_026255, intron 5 of 9)	36200.0	NM_026255	67582.0	Mm.280725	NM_026255	ENSMUSG00000045100	Slc25a26	4930433D19Rik|4933433F13Rik|AW557176|D6Bwg0781e|Slc25a6	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 26	protein-coding	1.80249806309322	1.87525291275107	2.73025199395233	1.15789943986795	1.68215779183082	1.48611146677572	2.10938647155652	2.59508786283734	0.0436019990774227	0.966830164170818	0.998431161219273
Merged-chr2-154373382-2	chr2	154373282	154373482	+	565.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025876)	promoter-TSS (NM_025876)	-663.0	NM_025876	66971.0	Mm.289427	NM_025876	ENSMUSG00000027487	Cdk5rap1	2310066P17Rik	CDK5 regulatory subunit associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-163675902-2	chr2	163675802	163676002	+	754.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039390, intron 2 of 4)	intron (NM_001039390, intron 2 of 4)	17444.0	NM_001164053	18769.0	Mm.10091	NM_011106	ENSMUSG00000035268	Pkig	PKIgamma	protein kinase inhibitor, gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-42851214-4	chr1	42851131	42851331	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023514)	promoter-TSS (NM_023514)	-2.0	NM_023514	69527.0	Mm.252982	NM_023514	ENSMUSG00000060679	Mrps9	2310002A08Rik|AW322516|Mrp-S9|S9mt|mg637	mitochondrial ribosomal protein S9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91052939-2	chr2	91052889	91053089	+	724.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	-1027.0	NM_008948	19182.0	Mm.289832	NM_008948	ENSMUSG00000002102	Psmc3	TBP-1	proteasome (prosome, macropain) 26S subunit, ATPase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122702392-4	chr5	122702300	122702500	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5144.0	NM_001310720	18438.0	Mm.290884	NM_011026	ENSMUSG00000029470	P2rx4	AI504491|AW555605|D5Ertd444e|P2X4	purinergic receptor P2X, ligand-gated ion channel 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-60584744-2	chr18	60584687	60584887	+	835.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_133363, intron 2 of 6)	intron (NM_133363, intron 2 of 6)	6929.0	NM_133363	170947.0	Mm.159257	NM_133363	ENSMUSG00000049173	Myoz3	4833419K08Rik|Fatz-3	myozenin 3	protein-coding	0.114437841651294	-0.444428982514677	-0.44862491687732	-0.451864139184519	-0.456444587246901	0.192965779285713	-0.447699231784176	-0.451298130494381	0.247538021746556	0.927755560690447	1
Merged-chr8-78509796-4	chr8	78509693	78509893	+	911.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009033)	promoter-TSS (NM_009033)	465.0	NM_001282108	76775.0	Mm.334631	NM_029736	ENSMUSG00000031684	Slc10a7	2410193C02Rik|P7	solute carrier family 10 (sodium/bile acid cotransporter family), member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-118643731-2	chr10	118643631	118643831	+	795.916687	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-87206.0	NR_104123	103214.0	Mm.30529	NR_104123	ENSMUSG00000112230	Ifngas1	AI447422|Tmevpg1	Ifng antisense RNA 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-109434475-3	chr11	109434405	109434605	+	874.361145	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252193, intron 6 of 7)	intron (NM_001252193, intron 6 of 7)	-5573.0	NR_040680	100503496.0	Mm.265874	NR_040680		Gm45916	-	predicted gene, 45916	ncRNA	0.592169530697765	0.839707060533284	0.455564593101427	1.20781264490501	1.21134712034042	0.466210521275433	0.810936841059059	0.449994731218664	-0.142678738329102	0.932752475894557	1
Merged-chr8-120176473-2	chr8	120176373	120176573	+	726.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033980, intron 1 of 7)	intron (NM_001033980, intron 1 of 7)	996.0	NM_001033980	436062.0	Mm.334852	NM_001033980	ENSMUSG00000042269	Fam92b	1700120B06Rik	family with sequence similarity 92, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-56995640-4	chr9	56995510	56995710	+	829.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_019651, exon 1 of 13)	exon (NM_019651, exon 1 of 13)	642.0	NM_019651	56294.0	Mm.325643	NM_019651	ENSMUSG00000032290	Ptpn9	MEG2	protein tyrosine phosphatase, non-receptor type 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-148558584-5	chr4	148558498	148558698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355489)	promoter-TSS (NM_001355489)	-115.0	NM_001355489	50912.0	Mm.266635	NM_016699	ENSMUSG00000017264	Exosc10	PM-Scl|PM/Scl-100|Pmscl2|RRP6|p2|p3|p4	exosome component 10	protein-coding	3.6069070657619	3.40737995525752	3.74112532143901	2.84611974593005	1.8840408599226	2.94804504057954	2.43592363267709	1.76183355010614	-2.00062776136325	0.00536690301735449	0.0705538010250758
Merged-chr1-91251585-4	chr1	91251496	91251696	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355764, intron 1 of 10)	intron (NM_001355764, intron 1 of 10)	1030.0	NM_001355764	67921.0	Mm.337238	NM_026454	ENSMUSG00000034343	Ube2f	2510010F15Rik|AI851109	ubiquitin-conjugating enzyme E2F (putative)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-120602307-2	chr5	120602207	120602407	+	548.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029408, intron 2 of 4)	intron (NM_029408, intron 2 of 4)	10282.0	NM_029096	100764.0	Mm.9654	NM_029096	ENSMUSG00000029600	Rita1	1110008J03Rik|AI853657|C86297|Rita	RBPJ interacting and tubulin associated 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-168128673-2	chr2	168128573	168128773	+	778.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25840.0	NR_040327	77017.0	Mm.407822	NR_040327	ENSMUSG00000087648	E130018N17Rik	-	RIKEN cDNA E130018N17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-139281604-2	chr3	139281504	139281704	+	915.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198659, intron 6 of 13)	intron (NM_198659, intron 6 of 13)	75711.0	NM_198659	381476.0	Mm.188334	NM_198659	ENSMUSG00000047940	Stpg2	B930007M17Rik|Gm1017	sperm tail PG rich repeat containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-40811565-2	chr9	40811501	40811701	+	754.75	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	10328.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	1.34501495195728	2.27824614460041	2.51791358916981	3.36039584415031	2.18312541951245	3.0116583144311	3.82036453997957	3.24191713772397	1.06617839729821	0.196461017112378	0.677858306167843
Merged-chr7-107620295-4	chr7	107620160	107620360	+	912.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163557, intron 1 of 25)	MLT1-int|LTR|ERVL-MaLR	13416.0	NM_001163557	19024.0	Mm.2817	NM_008905	ENSMUSG00000036528	Ppfibp2	Cclp1	PTPRF interacting protein, binding protein 2 (liprin beta 2)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28691267-4	chr17	28691170	28691370	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011951)	promoter-TSS (NM_011951)	-72.0	NM_001168508	26416.0	Mm.311337	NM_011951	ENSMUSG00000053436	Mapk14	CSBP2|Crk1|Csbp1|Mxi2|PRKM14|PRKM15|p38|p38-alpha|p38MAPK|p38a|p38alpha	mitogen-activated protein kinase 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-168589946-1	chr2	168589846	168590046	+	1000.0	f1_balb.idr	intron (NM_001291169, intron 1 of 10)	intron (NM_001291169, intron 1 of 10)	419.0	NM_001291178	18019.0	Mm.116802	NM_010899	ENSMUSG00000027544	Nfatc2	AI607462|NF-ATc2|NF-ATp|NFAT1|NFAT1-D|Nfatp	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2	protein-coding	-0.0504279042459373	-0.445277559886291	-0.450109742446862	-0.453855543453905	-0.459175775702334	0.446980314406428	-0.449041771376511	-0.453200036677711	1.55333327635875	0.560635577948653	1
Merged-chr11-118141345-2	chr11	118141245	118141445	+	789.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-12126.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-165604383-4	chr1	165604295	165604495	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083897, intron 4 of 5)	intron (NM_001083897, intron 4 of 5)	30146.0	NM_001001880	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-36854226-4	chr3	36854115	36854315	+	903.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8891.0	NM_172679	229227.0	Mm.207907	NM_172679	ENSMUSG00000037270	4932438A13Rik	4732443H21|B830039D19Rik|D630029K19Rik|FSA|Kiaa1109|Tweek	RIKEN cDNA 4932438A13 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-66279547-7	chr14	66279465	66279665	+	683.171448	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	1487.0	NM_001162366	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-101697019-4	chr13	101696914	101697114	+	986.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077495, intron 7 of 15)	intron (NM_001077495, intron 7 of 15)	-4384.0	NM_001024955	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-47772015-3	chr9	47771920	47772120	+	826.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	46188.0	NR_046048	100038460.0	Mm.447649	NR_046048		Gm10677	-	predicted gene 10677	ncRNA	1.51827091322477	0.755030279113108	1.37457520559988	1.53056330325044	1.15450674762481	0.757725120923135	1.2614000163413	0.735216367308837	-1.4309437946312	0.329633348977999	0.831942889324137
Merged-chr2-130730943-4	chr2	130730872	130731072	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029432, intron 27 of 36)	intron (NM_029432, intron 27 of 36)	-33453.0	NM_001081162	269356.0	Mm.441391	NM_001081162	ENSMUSG00000074796	Slc4a11	AI503023|BTR1|NaBC1	solute carrier family 4, sodium bicarbonate transporter-like, member 11	protein-coding	0.943013003927028	2.34973754617693	3.6879010536935	2.04964554347939	2.06871098693007	1.08777412993367	2.27783749031047	1.00962534297631	-1.85445858585721	0.306425964769874	0.806865344318695
Merged-chr7-99004509-1	chr7	99004409	99004609	+	542.0	f1_balb.idr	intron (NM_178635, intron 8 of 14)	intron (NM_178635, intron 8 of 14)	136635.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	1.17226200101275	0.354953691547546	0.887181649770386	0.335913005466561	1.53006930740102	0.357334699675917	0.346649546736223	0.337383062006105	0.179670512569788	0.92503968038471	0.998431161219273
Merged-chr3-20255309-3	chr3	20255219	20255419	+	961.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029706, intron 9 of 10)	MER20|DNA|hAT-Charlie	-13138.0	NM_007753	12873.0	Mm.1135	NM_007753	ENSMUSG00000001865	Cpa3	MC-CPA	carboxypeptidase A3, mast cell	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-25602815-6	chr8	25602733	25602933	+	872.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001735, intron 1 of 9)	intron (NM_001001735, intron 1 of 9)	549.0	NM_001308482	234135.0	Mm.217337	NM_001001735	ENSMUSG00000054823	Nsd3	6720429E03|A530023P05|AI528490|WHISTLE|Whsc1l1	nuclear receptor binding SET domain protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-48446302-4	chr14	48446157	48446357	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172600)	promoter-TSS (NM_172600)	-95.0	NM_172600	218989.0	Mm.85211	NM_172600	ENSMUSG00000036339	Tmem260	5930435P15|6720456H20Rik	transmembrane protein 260	protein-coding	5.84135744290848	5.40555087472198	6.56841483100953	5.78362491466831	5.10087451389735	5.12692754203378	5.89071674881573	6.11178868592994	-0.375222511496287	0.240340153633553	0.736569477638593
Merged-chr11-30291281-1	chr11	30291181	30291381	+	713.5	f0_balb.idr	Intergenic	Intergenic	-71509.0	NM_175836	20742.0	Mm.123110	NM_009260	ENSMUSG00000020315	Sptbn1	9930031C03Rik|AL033301|SPTB2|Spnb-2|Spnb2|elf1|elf3|mKIAA4049	spectrin beta, non-erythrocytic 1	protein-coding	0.269070516454222	0.627479697900928	0.141285639367888	0.433315044108381	0.130722072130367	0.340196173660057	0.142538059766375	0.759400618489084	-0.0294040593560515	0.987785063597825	1
Merged-chr8-70426721-4	chr8	70426633	70426833	+	982.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004062, intron 1 of 13)	intron (NM_001004062, intron 1 of 13)	12840.0	NM_001004062	382056.0	Mm.227767	NM_001004062	ENSMUSG00000003575	Crtc1	AI413414|Mect1|R74955|TORC1|mKIAA0616	CREB regulated transcription coactivator 1	protein-coding	3.25667365869143	3.56388162887965	3.44441642754762	4.02331259923705	3.28423472735151	3.91797238585247	3.72069964745454	4.04236626918654	0.241780196753934	0.637214339888782	0.982417279970648
Merged-chr1-80728390-2	chr1	80728290	80728490	+	643.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175291, intron 1 of 55)	intron (NM_175291, intron 1 of 55)	30163.0	NM_175291	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105636822-4	chr8	105636695	105636895	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358924, intron 1 of 11)	CpG	257.0	NM_001358924	13018.0	Mm.269474	NM_181322	ENSMUSG00000005698	Ctcf	AW108038	CCCTC-binding factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132345134-2	chr4	132345034	132345234	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133878, intron 1 of 9)	CpG	616.0	NM_001197082	100088.0	Mm.255045	NM_133878	ENSMUSG00000028896	Rcc1	4931417M11Rik|AI326872|Chc1	regulator of chromosome condensation 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-21282857-3	chr19	21282912	21283112	+	754.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009551, exon 6 of 6)	3' UTR (NM_009551, exon 6 of 6)	10734.0	NM_009551	22682.0	Mm.292405	NM_009551	ENSMUSG00000024750	Zfand5	2310057A04Rik|5830475F03Rik|AA415485|Za20d2|Zfp216	zinc finger, AN1-type domain 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-87425898-2	chr11	87425798	87425998	+	855.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_031386, intron 1 of 30)	B1_Mus1|SINE|Alu	-1693.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-174031870-4	chr1	174031768	174031968	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172648)	promoter-TSS (NM_172648)	-113.0	NM_172648	226695.0	Mm.425061	NM_172648	ENSMUSG00000054203	Ifi205	D3|D3cDNA|Ifi205a	interferon activated gene 205	protein-coding	3.88320526536524	4.21200546429859	4.8134582472732	4.0266042288391	4.17989955844214	4.02170737749128	4.846223782376	4.16655759955993	0.0848408261102599	0.844795106470842	0.998431161219273
Merged-chr17-56584853-4	chr17	56584749	56584949	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355463)	promoter-TSS (NM_001355463)	-133.0	NM_001163300	224903.0	Mm.255066	NM_001163300	ENSMUSG00000071054	Safb	3110021E02Rik|5330423C17Rik|AU018122|D18386|E130307D12|HAP|HET|SAF-B1|SAFB1	scaffold attachment factor B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-155107461-4	chr2	155107348	155107548	+	976.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	-7369.0	NR_040634	100504268.0	Mm.410858	NR_040634	ENSMUSG00000087254	2310005A03Rik	-	RIKEN cDNA 2310005A03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-125054068-4	chr8	125053958	125054158	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_174853)	promoter-TSS (NM_174853)	-137.0	NM_174853	244667.0	Mm.233504	NM_170596	ENSMUSG00000043051	Disc1	-	disrupted in schizophrenia 1	protein-coding	4.63386209981184	4.19097669866955	3.91294130734461	5.08599531481696	3.63382727861639	4.57457244002893	3.6981601854487	3.74610834453825	-0.755425010292025	0.101378936587035	0.495198369601582
Merged-chr10-39464019-2	chr10	39463919	39464119	+	724.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001122893, intron 3 of 13)	B4A|SINE|B4	94220.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98773923-4	chr11	98773826	98774026	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145434, intron 1 of 7)	CpG	1451.0	NM_145434	217166.0	Mm.390397	NM_145434	ENSMUSG00000020889	Nr1d1	A530070C09Rik|R75201	nuclear receptor subfamily 1, group D, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-99899718-2	chr14	99899618	99899818	+	947.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_010636, intron 6 of 6)	intron (NM_010636, intron 6 of 6)	250078.0	NM_010636	16597.0	Mm.396499	NM_010636	ENSMUSG00000072294	Klf12	2700063E05Rik|AI225908|AI315654|AP-2rep|B130052C06Rik|D530033K05Rik	Kruppel-like factor 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-84440098-3	chr3	84440005	84440205	+	718.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A0|LTR|ERVL-MaLR	39386.0	NM_001205355	229474.0	Mm.331107	NM_001033301	ENSMUSG00000041842	Fhdc1	6330505N24Rik|Gm126	FH2 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-80132185-1	chr12	80132085	80132285	+	1000.0	f0_balb.idr	intron (NR_033514, intron 1 of 2)	intron (NR_033514, intron 1 of 2)	659.0	NR_033514	69548.0	Mm.269712	NR_033514		2310015A10Rik	5330419I17Rik	RIKEN cDNA 2310015A10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95684764-2	chr3	95684664	95684864	+	736.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301705, intron 3 of 17)	intron (NM_001301705, intron 3 of 17)	3153.0	NM_144899	229595.0	Mm.490574	NM_144899	ENSMUSG00000015850	Adamtsl4	ADAMTSL-4|Tsrc1	ADAMTS-like 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-16242763-1	chr14	16242663	16242863	+	670.0	f1_c57bl6.idr	exon (NM_001359883, exon 2 of 3)	exon (NM_001359883, exon 2 of 3)	568.0	NM_001359883	71147.0	Mm.197960	NM_027695	ENSMUSG00000021786	Oxsm	4933425A18Rik|C80494	3-oxoacyl-ACP synthase, mitochondrial	protein-coding	2.55915251418788	2.11302934465921	1.16914826810914	2.44792443572392	2.42156229421403	1.21508923759938	1.1776495364366	3.31350880406808	0.395915275207273	0.72559846829774	0.998431161219273
Merged-chr5-140337374-2	chr5	140337274	140337474	+	687.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356584, intron 4 of 4)	B3|SINE|B2	5418.0	NM_001356584	17766.0	Mm.118846	NM_008637	ENSMUSG00000036639	Nudt1	Mth1	nudix (nucleoside diphosphate linked moiety X)-type motif 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126833669-4	chr8	126833539	126833739	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15381.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55257595-5	chr19	55257370	55257570	+	781.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027976, intron 1 of 21)	B4A|SINE|B4	4101.0	NM_027976	433256.0	Mm.292056	NM_027976	ENSMUSG00000024981	Acsl5	1700030F05Rik|ACS2|ACS5|Facl5	acyl-CoA synthetase long-chain family member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-148857153-4	chr2	148857056	148857256	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6222.0	NM_029960	77705.0	Mm.159975	NM_029960	ENSMUSG00000027446	9230104L09Rik	mCST E2	RIKEN cDNA 9230104L09 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124260757-4	chr6	124260659	124260859	+	639.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28975.0	NM_001104642	232367.0	Mm.469872	NM_001104642	ENSMUSG00000072778	Vmn2r27	EG232367	vomeronasal 2, receptor27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81022219-1	chr15	81022119	81022319	+	732.333313	f0_c57.idr	intron (NM_001082536, intron 6 of 13)	intron (NM_001082536, intron 6 of 13)	44454.0	NM_134091	105835.0	Mm.274943	NM_134091	ENSMUSG00000042303	Sgsm3	1810012I01Rik|AI428557|BB175482|Cip85|R75178|RUSC3|Rutbc3	small G protein signaling modulator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-32721825-2	chr3	32721725	32721925	+	849.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019673, intron 11 of 13)	intron (NM_019673, intron 11 of 13)	13279.0	NM_019673	56456.0	Mm.41077	NM_019673	ENSMUSG00000027671	Actl6a	2810432C06Rik|AI851094|ARP4|Actl6|Baf53a|C79802	actin-like 6A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-56062232-4	chr16	56062109	56062309	+	876.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360073, intron 1 of 24)	intron (NM_001360073, intron 1 of 24)	4679.0	NM_001360073	66315.0	Mm.255784	NM_025483	ENSMUSG00000052917	Senp7	2410152H17Rik|2810413I22Rik|2900036C23Rik|6030449K19Rik|AI790676	SUMO1/sentrin specific peptidase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70765988-3	chr8	70765870	70766070	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023065, intron 1 of 7)	intron (NM_023065, intron 1 of 7)	693.0	NM_023065	65972.0	Mm.30241	NM_023065		Ifi30	GILT|IP30	interferon gamma inducible protein 30	protein-coding	3.88525467213248	3.8499088014268	3.54555096977274	4.02726014030782	4.20940968032811	4.52160627614235	3.8300268990134	4.31057449828985	0.546962121539312	0.213774648272955	0.7035593879412
Merged-chr19-33158417-3	chr19	33158322	33158522	+	938.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146342, intron 4 of 4)	MIRb|SINE|MIR	1310.0	NR_039552	100628575.0		NR_039552	ENSMUSG00000106278	Mir3970	mmu-mir-3970|mu-mir-3970	microRNA 3970	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-58421583-2	chr1	58421483	58421683	+	771.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001042634, intron 2 of 12)	intron (NM_001042634, intron 2 of 12)	2505.0	NR_027854	12747.0	Mm.1761	NM_009905	ENSMUSG00000026034	Clk1	STY	CDC-like kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-4848828-7	chr11	4848758	4848958	+	970.785706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010898, intron 1 of 15)	CpG	686.0	NM_001252250	18016.0	Mm.297109	NM_010898	ENSMUSG00000009073	Nf2	merlin	neurofibromin 2	protein-coding	1.10532150184564	1.75656502802561	1.02379269664755	1.63165401548545	1.63435796845286	0.832877552357747	1.03054875813566	1.00409061478741	-0.929478280923563	0.478464663306948	0.928092227925527
Merged-chr3-96597895-6	chr3	96597865	96598065	+	792.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001024851, exon 2 of 2)	exon (NM_001024851, exon 2 of 2)	1329.0	NM_001024851	545554.0	Mm.267664	NM_001024851	ENSMUSG00000049097	Ankrd34a	AW060394|Ankrd34	ankyrin repeat domain 34A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-46936973-3	chr18	46936872	46937072	+	640.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15157.0	NM_001033446	381142.0	Mm.329423	NM_001033446	ENSMUSG00000073568	Arl14epl	Gm949	ADP-ribosylation factor-like 14 effector protein-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-61349934-4	chr9	61349826	61350026	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J2|LTR|ERVL-MaLR	-22440.0	NM_001083928	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-37016313-1	chr15	37016213	37016413	+	1000.0	f1_balb.idr	Intergenic	B1_Mm|SINE|Alu	-8911.0	NM_026521	68036.0	Mm.371631	NM_026521	ENSMUSG00000062397	Zfp706	3110006P09Rik|AA793007|AW536850|C77232|Znf706	zinc finger protein 706	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96562614-4	chr3	96562523	96562723	+	821.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_023719)	TTS (NM_023719)	4178.0	NR_040409	100038464.0	Mm.475126	NR_040409	ENSMUSG00000074398	Gm15441	-	predicted gene 15441	ncRNA	0.870353154176206	1.36151278935246	0.970547567075895	1.04845379564292	0.623124153493215	0.490560906033631	0.48131804849479	0.473365939983192	-3.73885751541795	0.0267144089253404	1
Merged-chr10-91209286-3	chr10	91209225	91209425	+	662.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151510, intron 3 of 3)	intron (NR_151510, intron 3 of 3)	11294.0	NR_151510	102633753.0	Mm.416936	NR_151510		4930534H03Rik	-	RIKEN cDNA 4930534H03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85644661-2	chr12	85644561	85644761	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	-42059.0	NM_016767	53314.0	Mm.6672	NM_016767	ENSMUSG00000034266	Batf	B-ATF|SFA-2	basic leucine zipper transcription factor, ATF-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-123929082-5	chr9	123929000	123929200	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39592.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-11559450-1	chr4	11559350	11559550	+	540.0	f0_balb.idr	intron (NM_001039556, intron 1 of 14)	intron (NM_001039556, intron 1 of 14)	530.0	NM_001256145	623474.0	Mm.491200	NM_177285	ENSMUSG00000078773	Rad54b	E130016E03Rik	RAD54 homolog B (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-5890145-2	chr13	5890045	5890245	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28656.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-50415843-4	chr17	50415744	50415944	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-93703.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90442317-2	chr2	90442217	90442417	+	674.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 21 of 23)	intron (NM_008982, intron 21 of 23)	36857.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5572485-4	chr19	5572376	5572576	+	959.3583369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4452.0	NM_001033448	381201.0	Mm.441906	NM_001033448	ENSMUSG00000049562	Ap5b1	Gm962|beta-5	adaptor-related protein complex 5, beta 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55728470-4	chr14	55728381	55728581	+	982.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6218.0	NM_001360387	56187.0	Mm.87216	NM_019519	ENSMUSG00000040472	Rabggta	gm	Rab geranylgeranyl transferase, a subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-120837291-2	chr7	120837191	120837391	+	618.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5540.0	NM_007908	13631.0	Mm.25997	NM_007908	ENSMUSG00000035064	Eef2k	C86191|eEF-2K	eukaryotic elongation factor-2 kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-3847194-4	chr16	3847104	3847304	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081217)	promoter-TSS (NM_001081217)	-19.0	NM_001081217	385674.0	Mm.244261	NM_001081217	ENSMUSG00000054939	Zfp174	Gm1754	zinc finger protein 174	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-55612382-4	chr3	55612305	55612505	+	902.5166630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	150677.0	NM_001357476	13175.0	Mm.393242	NM_019978	ENSMUSG00000027797	Dclk1	1700113D08Rik|2810480F11Rik|AI836758|Click-I|Cpg16|Dcamkl1|Dcl|Dclk|mKIAA0369	doublecortin-like kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-63389915-4	chr4	63389827	63390027	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045514, intron 4 of 21)	intron (NM_001045514, intron 4 of 21)	8313.0	NM_001305432	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-105018997-4	chr3	105018900	105019100	+	971.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030249, intron 3 of 5)	intron (NM_030249, intron 3 of 5)	33953.0	NM_001163332	80281.0	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83162830-6	chr6	83162742	83162942	+	828.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027948, exon 4 of 4)	exon (NM_027948, exon 4 of 4)	-3082.0	NM_001198866	13191.0	Mm.6919	NM_007835	ENSMUSG00000031865	Dctn1	AL022633|DAP-150|DP-150|Glued|p150|p150-glued|p150<glued>	dynactin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-72102632-2	chr1	72102532	72102732	+	595.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-97437.0	NR_040454	71134.0	Mm.370574	NR_040454	ENSMUSG00000101848	4933417E11Rik	-	RIKEN cDNA 4933417E11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-14317381-4	chr16	14317281	14317481	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025345)	promoter-TSS (NM_025345)	-49.0	NM_025345	66086.0	Mm.42072	NM_025345	ENSMUSG00000022677	Fopnl	0610037P05Rik	Fgfr1op N-terminal like	protein-coding	3.75117496400048	4.53003940846844	3.58113561670687	4.19506284771717	3.54124462508266	3.22728038701816	3.60934141166947	1.98463303189808	-1.2202568273849	0.0348069579711253	0.263867237829125
Merged-chr2-126553013-2	chr2	126552913	126553113	+	890.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011978)	promoter-TSS (NM_011978)	-11.0	NM_011978	26458.0	Mm.290044	NM_011978	ENSMUSG00000027359	Slc27a2	ACSVL1|FATP2|VLCS|Vlac|Vlacs	solute carrier family 27 (fatty acid transporter), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-19956145-3	chr10	19956039	19956239	+	680.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008580, intron 1 of 29)	URR1B|DNA|hAT-Charlie	21613.0	NM_008580	26408.0	Mm.6595	NM_008580	ENSMUSG00000071369	Map3k5	7420452D20Rik|ASK|ASK1|MAPKKK5|Mekk5	mitogen-activated protein kinase kinase kinase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-18011344-4	chr11	18011266	18011466	+	980.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57396.0	NR_131915	102633673.0	Mm.396603	NR_131915	ENSMUSG00000086468	Etaa1os	2900053O20Rik|4930542E09Rik	Ewing tumor-associated antigen 1, opposite strand	ncRNA	1.41696795535303	1.58520379047767	1.08811814805084	1.91637504163388	2.27165328340815	1.11856694652893	2.10855658426149	2.53660306922577	1.60036737961865	0.154514566356236	0.610069793551649
Merged-chr2-52606202-4	chr2	52606079	52606279	+	789.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037099, intron 2 of 13)	L2a|LINE|L2	-47568.0	NM_001285427	12298.0	Mm.330223	NM_146123	ENSMUSG00000017412	Cacnb4	3110038O15Rik|Cchb4|lh	calcium channel, voltage-dependent, beta 4 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-45325663-3	chr14	45325533	45325733	+	914.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F1|LTR|ERVL-MaLR	-4191.0	NM_025959	67089.0	Mm.18472	NM_025959	ENSMUSG00000021832	Psmc6	2300001E01Rik|AI451058	proteasome (prosome, macropain) 26S subunit, ATPase, 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-70140742-4	chr12	70140645	70140845	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-13426.0	NM_001195033	100504285.0	Mm.291105	NM_001195033	ENSMUSG00000090121	Abhd12b	Gm804	abhydrolase domain containing 12B	protein-coding	1.47661071397635	2.51650153383688	2.14443926445911	1.13407225760806	2.24863465735459	1.83404506290789	1.40400903106827	1.9817242882258	-0.0918183080542393	0.931920010954504	0.998431161219273
Merged-chr13-67451611-4	chr13	67451518	67451718	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177712)	promoter-TSS (NM_177712)	6.0	NM_177712	238692.0	Mm.486478	NM_177712	ENSMUSG00000069206	Zfp874a	C330011K17Rik|Rslcan15|Zfp874	zinc finger protein 874a	protein-coding	4.83004367149651	3.98850982442262	4.00261179271325	3.74350103850511	4.74716722717995	4.69165821962435	3.6229350252942	4.42219783674454	0.285070490191228	0.530308082087278	0.950119915711771
Merged-chr3-88640598-3	chr3	88640444	88640644	+	783.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001198913, intron 14 of 21)	B3|SINE|B2	12598.0	NM_181817	242093.0	Mm.269130	NM_181817	ENSMUSG00000049741	Rxfp4	GPCR142|Gpr100|Rln3r2|SALPR	relaxin family peptide receptor 4	protein-coding	0.303672536720862	0.32856020674186	0.320472043794392	0.49251562867871	0.719295391119366	0.864310454856415	1.23382784082864	0.495896132316868	3.61075649522172	0.0437085953923264	1
Merged-chr9-48576950-1	chr9	48576850	48577050	+	810.0	f1_c57bl6.idr	Intergenic	B4|SINE|B4	28173.0	NM_010924	18113.0	Mm.8362	NM_010924	ENSMUSG00000032271	Nnmt	-	nicotinamide N-methyltransferase	protein-coding	3.66315156800033	4.52256011255028	2.55962795450069	1.56984531603206	2.86770937541616	4.06318483367813	3.13274704126475	3.81730647532861	0.059492178433766	0.936701804972465	0.998431161219273
Merged-chr10-99166086-5	chr10	99165859	99166059	+	794.119995	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153333, intron 11 of 12)	intron (NR_153333, intron 11 of 12)	57824.0	NM_015737	14426.0	Mm.314	NM_015737	ENSMUSG00000090035	Galnt4	AV011803	polypeptide N-acetylgalactosaminyltransferase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-117865172-1	chr5	117865072	117865272	+	542.0	f1_balb.idr	Intergenic	Intergenic	-1667.0	NM_008712	18125.0	Mm.44249	NM_008712	ENSMUSG00000029361	Nos1	2310005C01Rik|N-NOS|NC-NOS|NO|NOS|NOS-I|Nos-1|bNOS|nNOS	nitric oxide synthase 1, neuronal	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-48083982-3	chr6	48083880	48084080	+	934.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362062, intron 1 of 5)	intron (NM_001362062, intron 1 of 5)	2613.0	NM_001347142	69228.0	Mm.207555	NM_001163475	ENSMUSG00000057691	Zfp746	2810407L07Rik|AI317225|Znf746	zinc finger protein 746	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70635672-4	chr8	70635564	70635764	+	948.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3208.0	NM_001330687	23886.0	Mm.31325	NM_011819	ENSMUSG00000038508	Gdf15	MIC-1|NAG-1|SBF	growth differentiation factor 15	protein-coding	3.55607128572157	3.37735387407227	2.89158376653332	2.91347763325241	2.17061995510532	3.12325003092876	2.79726348647704	3.02382928280757	-0.705140517549461	0.284083296768139	0.787545589926135
Merged-chr8-71729386-2	chr8	71729286	71729486	+	583.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3705.0	NM_028715	74015.0	Mm.22025	NM_028715	ENSMUSG00000070000	Fcho1	3322402E17Rik|N28152	FCH domain only 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-28251876-2	chr19	28251776	28251976	+	740.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-240710.0	NM_001166414	19726.0	Mm.313321	NM_011265	ENSMUSG00000040929	Rfx3	C230093O12Rik|MRFX3	regulatory factor X, 3 (influences HLA class II expression)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-31168902-3	chr9	31168803	31169003	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001102456, exon 6 of 17)	exon (NM_001102456, exon 6 of 17)	-37104.0	NM_011176	19143.0	Mm.243926	NM_011176	ENSMUSG00000031995	St14	Epithin|MT-SP1|Prss14|Tmprss14|mCAP3|matriptase	suppression of tumorigenicity 14 (colon carcinoma)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95652463-10	chr3	95652486	95652686	+	961.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-6135.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	2.46295267382257	3.22374247899607	2.96024019019651	1.89441866198892	2.82885888891002	2.79057646703675	1.47056215911163	2.61232643151271	-0.385129541120146	0.648146411079363	0.984971605872381
Merged-chr17-56478612-2	chr17	56478512	56478712	+	757.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2132.0	NM_011218	19280.0	Mm.258771	NM_011218	ENSMUSG00000013236	Ptprs	AL022616|PTP|PTP-NU3|PTPNU-3|PTPsigma|Ptpt9|R-PTP-S|RPTPsigma	protein tyrosine phosphatase, receptor type, S	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-108442519-3	chr3	108442428	108442628	+	807.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011319, intron 1 of 11)	PB1D11|SINE|Alu	2731.0	NM_011319	20226.0	Mm.28688	NM_011319	ENSMUSG00000068739	Sars	Sars1|Strs|serRS	seryl-aminoacyl-tRNA synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-67174163-4	chr15	67174070	67174270	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009177, intron 1 of 8)	intron (NM_009177, intron 1 of 8)	2712.0	NM_009177	20442.0	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	3.88528471674904	3.33660995328929	3.08536237901872	4.84141760114296	3.91699083162105	4.89093308565867	4.04680711346647	4.26982513392559	0.464169166537039	0.372683960942172	0.865109408625856
Merged-chr14-62865647-4	chr14	62865558	62865758	+	936.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_105860)	TTS (NR_105860)	116.0	NR_105860	102465311.0		NR_105860	ENSMUSG00000098858	Mir6541	Gm27311|mmu-mir-6541	microRNA 6541	ncRNA	4.7579069830286	4.41170859508803	3.5542771708285	4.94798523494193	4.46650721116833	4.86595372581984	4.67407772799825	5.03477404954085	0.314171200178209	0.432127747263049	0.904679012727573
Merged-chr6-128065568-3	chr6	128065438	128065638	+	894.9833369999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356301, intron 1 of 7)	intron (NM_001356301, intron 1 of 7)	78040.0	NM_175414	109246.0	Mm.21814	NM_175414	ENSMUSG00000030352	Tspan9	6720474K14Rik|9430079M16Rik|AU018597|Tspan-9	tetraspanin 9	protein-coding	1.53491894394714	1.87382859647746	2.27026660895542	2.04010177918243	1.27657731905389	0.968562976924546	1.18788765859972	0.929979230517886	-3.23458029281755	0.0120826340509654	0.124756835923824
Merged-chr11-107676814-4	chr11	107676707	107676907	+	832.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198298, intron 30 of 31)	intron (NM_198298, intron 30 of 31)	39085.0	NR_105897	102465562.0		NR_105897	ENSMUSG00000098497	Mir6932	Gm27691|mmu-mir-6932	microRNA 6932	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-90216329-3	chr15	90216225	90216425	+	764.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	-7986.0	NM_001033441	380959.0	Mm.17853	NM_001033441	ENSMUSG00000075470	Alg10b	AA469671|AU045404|AW123895|C85569|Deaf1|Gm917|nse5	asparagine-linked glycosylation 10B (alpha-1,2-glucosyltransferase)	protein-coding	1.76073049469281	1.58356672585388	2.46761801667015	2.10295785826869	2.11724018759972	1.79802683086642	2.48687347167148	2.11349997025486	0.321231131623197	0.728946036107352	0.998431161219273
Merged-chr16-11054603-3	chr16	11054496	11054696	+	747.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11702.0	NM_009223	20621.0	Mm.325800	NM_009223	ENSMUSG00000037972	Snn	2810407J07Rik|AI848521|AW547286	stannin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-37955638-4	chr19	37955517	37955717	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302140, intron 22 of 53)	intron (NM_001302140, intron 22 of 53)	87960.0	NM_001099634	226101.0	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding	5.27161721306569	4.97939439113334	3.48407530974002	4.89912990749888	5.05560859167733	5.17410599268845	5.05965551607361	5.09284209109243	0.338991756729905	0.37389186536699	0.867018670404551
Merged-chr9-121313773-4	chr9	121313671	121313871	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152160, intron 1 of 17)	RMER17C|LTR|ERVK	16269.0	NR_152160	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-19972616-4	chr14	19972533	19972733	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285908, intron 1 of 3)	GA-rich|Low_complexity|Low_complexity	4060.0	NM_001285911	14702.0	Mm.41737	NM_010315	ENSMUSG00000043004	Gng2	-	guanine nucleotide binding protein (G protein), gamma 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-32195564-3	chr5	32195405	32195605	+	903.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-37203.0	NM_030072	665270.0	Mm.160067	NM_030072	ENSMUSG00000029134	Plb1	4632413E21Rik|4930433E17Rik|4930539A06Rik|BC033606	phospholipase B1	protein-coding	1.40343458635371	2.39740444627454	1.0595447988482	2.23709564016915	1.22968246183875	2.41688076414638	1.06569227633139	2.2498040345114	-0.030576188234484	0.979298561270997	0.998431161219273
Merged-chr9-40501658-4	chr9	40501565	40501765	+	964.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357617, intron 1 of 20)	intron (NM_001357617, intron 1 of 20)	29718.0	NM_001357617	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	4.47950542043052	5.65136344368006	5.68105670319758	5.08804166959054	6.66934805273915	6.53843751108426	6.93682786764001	6.56251833476345	1.53447252881546	1.12761598562273e-08	1.32638594073544e-06
Merged-chr17-7466797-1	chr17	7466697	7466897	+	596.0	f1_c57bl6.idr	Intergenic	Intergenic	-81492.0	NM_001142539	667055.0	Mm.327371	NM_001142539	ENSMUSG00000056133	Gm9992	-	predicted gene 9992	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-112609704-2	chr12	112609604	112609804	+	798.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_198411, exon 17 of 23)	exon (NM_198411, exon 17 of 23)	-10343.0	NM_007421	11565.0	Mm.3440	NM_007421	ENSMUSG00000011148	Adssl1	AI528595|Adss|Adss1	adenylosuccinate synthetase like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-46890756-2	chr1	46890656	46890856	+	870.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356417, intron 2 of 10)	intron (NM_001356417, intron 2 of 10)	35020.0	NM_001356417	227059.0	Mm.233889	NM_172653	ENSMUSG00000025986	Slc39a10	2900042E17Rik|5430433I10|Zip10|mKIAA1265	solute carrier family 39 (zinc transporter), member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-15201716-4	chr18	15201630	15201830	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50284.0	NM_134112	106931.0	Mm.329299	NM_134112	ENSMUSG00000036225	Kctd1	4933402K10Rik|AI661543|AW553000	potassium channel tetramerisation domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-5692448-4	chr4	5692362	5692562	+	900.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173426, intron 1 of 2)	MMERVK9C_I-int|LTR|ERVK	-31850.0	NM_001355716	242297.0	Mm.331470	NM_173426	ENSMUSG00000049119	Fam110b	1700012H17Rik|5031405P22|AW049855	family with sequence similarity 110, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-29504529-2	chr19	29504429	29504629	+	972.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_015567, exon 4 of 4)	non-coding (NR_015567, exon 4 of 4)	17458.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-51332309-2	chr3	51332209	51332409	+	653.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023502, intron 1 of 9)	B1_Mur4|SINE|Alu	8335.0	NM_001356358	69257.0	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-50927345-2	chr1	50927245	50927445	+	827.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019790)	promoter-TSS (NM_019790)	-178.0	NM_019790	56363.0	Mm.245154	NM_019790	ENSMUSG00000026109	Tmeff2	4832418D20Rik|7630402F16Rik|TR-2	transmembrane protein with EGF-like and two follistatin-like domains 2	protein-coding	0.445402066579203	0.193327748852302	0.186885432685594	0.820250294328057	0.174849823842613	0.825368098853632	0.525798700014151	0.18277556285343	0.109174456784992	0.955981171997321	1
Merged-chr16-49504005-4	chr16	49503904	49504104	+	845.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-195290.0	NM_028680	73916.0	Mm.241276	NM_028680	ENSMUSG00000032965	Ift57	4833420A15Rik|Esrrbl1|Hippi|MHS4R2	intraflagellar transport 57	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167380809-3	chr2	167380719	167380919	+	712.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31641.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-50432397-4	chr16	50432295	50432495	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347240)	promoter-TSS (NM_001347240)	-6.0	NM_027444	70508.0	Mm.28940	NM_027444	ENSMUSG00000022641	Bbx	5530401J07Rik|5730403O13Rik	bobby sox HMG box containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-25372977-2	chr2	25372877	25373077	+	812.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_001290407, exon 1 of 6)	exon (NM_001290407, exon 1 of 6)	942.0	NM_001081085	72080.0	Mm.250293	NM_001081085	ENSMUSG00000026955	Sapcd2	2010317E24Rik|6030458L21Rik|AL033337|ang	suppressor APC domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-116328815-2	chr7	116328715	116328915	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5375.0	NM_026533	68052.0	Mm.14798	NM_026533	ENSMUSG00000090862	Rps13	2700063M04Rik	ribosomal protein S13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-121289556-4	chr2	121289424	121289624	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_032393)	promoter-TSS (NM_032393)	-78.0	NM_032393	17754.0	Mm.36501	NM_032393	ENSMUSG00000027254	Map1a	6330416M19Rik|AI853608|Mtap-1|Mtap1|Mtap1a|moth1	microtubule-associated protein 1 A	protein-coding	3.4173982056396	5.00229740238398	2.703625859047	3.44319869355017	4.03754278010422	4.08858111743731	3.15847521122584	3.90219047571889	-0.125164125298768	0.834744528168626	0.998431161219273
Merged-chr12-108180348-4	chr12	108180265	108180465	+	928.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009832, intron 1 of 11)	intron (NM_009832, intron 1 of 11)	627.0	NM_009832	12454.0	Mm.474441	NM_009832	ENSMUSG00000021258	Ccnk	AW123198|AW413594|CPR4|CycK	cyclin K	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-146653792-4	chr3	146653698	146653898	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2481.0	NM_029144	75015.0	Mm.250432	NM_029144	ENSMUSG00000048652	4930503B20Rik	1700013A07Rik|1700095G21Rik|4930483N21Rik|Gm1652|Samd13	RIKEN cDNA 4930503B20 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-180273604-4	chr2	180273504	180273704	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145851)	promoter-TSS (NM_145851)	-139.0	NM_145851	252966.0	Mm.386884	NM_145851	ENSMUSG00000038990	Cables2	ik3-2	CDK5 and Abl enzyme substrate 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-123116485-2	chr6	123116385	123116585	+	774.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4A|LINE|L1	-6205.0	NM_001170332	26888.0	Mm.47384	NM_011999	ENSMUSG00000030148	Clec4a2	Clec4a|Clecsf6|DCIR|Dcir1	C-type lectin domain family 4, member a2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-97195896-4	chr15	97195805	97196005	+	999.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28661.0	NR_155279	102635594.0	Mm.392594	NR_155278	ENSMUSG00000116295	Gm32885	-	predicted gene, 32885	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-88764062-2	chr5	88763962	88764162	+	730.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007832)	promoter-TSS (NM_007832)	-951.0	NM_007832	13178.0	Mm.298892	NM_007832	ENSMUSG00000029366	Dck	-	deoxycytidine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-36049351-4	chr2	36049242	36049442	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029309)	promoter-TSS (NM_029309)	-50.0	NM_026703	68375.0	Mm.19834	NM_026703	ENSMUSG00000026895	Ndufa8	0610033L03Rik|AW261656	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-76931226-2	chr18	76931126	76931326	+	956.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025409, intron 1 of 2)	intron (NM_025409, intron 1 of 2)	1199.0	NM_025409	66191.0	Mm.28593	NM_025409	ENSMUSG00000090000	Ier3ip1	1110057H19Rik|AI644142|AL022842|AL022863|AV026606	immediate early response 3 interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88402632-2	chr3	88402532	88402732	+	718.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025928, intron 1 of 4)	intron (NM_025928, intron 1 of 4)	7765.0	NM_001310605	67037.0	Mm.36715	NM_025928	ENSMUSG00000028066	Pmf1	2600009M07Rik|AL033286|AW060657	polyamine-modulated factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-108597510-2	chr9	108597410	108597610	+	923.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_028944, exon 1 of 9)	exon (NM_028944, exon 1 of 9)	102.0	NM_028944	74443.0	Mm.226534	NM_028944	ENSMUSG00000006675	P4htm	4933406E20Rik|AI853847|BB128974|HIF-PH4|HPH-4|P4H-TM|Ph-4	prolyl 4-hydroxylase, transmembrane (endoplasmic reticulum)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-11037012-2	chr16	11036912	11037112	+	557.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28114.0	NR_040518	100043147.0	Mm.489001	NR_040518	ENSMUSG00000097056	Gm4262	-	predicted gene 4262	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-60848683-4	chr2	60848575	60848775	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	32763.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-95700500-2	chr16	95700400	95700600	+	804.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1907.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-98507929-2	chr15	98507829	98508029	+	595.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	10455.0	NM_001001807	258502.0	Mm.377539	NM_001001807	ENSMUSG00000054036	Olfr279	MOR122-1|Olfr234|Olfr234-ps1|Olfr279-ps1	olfactory receptor 279	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-79018128-4	chr12	79018033	79018233	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10856.0	NM_178745	268567.0	Mm.341747	NM_178745	ENSMUSG00000046157	Tmem229b	6330442E10Rik|9830138K24|AU019070	transmembrane protein 229B	protein-coding	1.41935898898705	2.46203256665568	1.51559089583922	1.97303191227106	1.88910374762164	2.57954272456384	2.1754567518575	2.32136772702032	0.881163958502525	0.35373146636839	0.853132398390271
Merged-chr3-28027104-4	chr3	28026980	28027180	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008875, intron 3 of 25)	intron (NM_008875, intron 3 of 25)	42909.0	NM_008875	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69761416-2	chr11	69761316	69761516	+	837.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_019871, intron 1 of 1)	intron (NM_019871, intron 1 of 1)	428.0	NM_019871	56293.0	Mm.6211	NM_019871	ENSMUSG00000018776	Slc35g3	Amac1	solute carrier family 35, member G3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-109344159-4	chr11	109344070	109344270	+	915.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2697.0	NR_027883	67927.0	Mm.394490	NR_027883	ENSMUSG00000099630	1700096J18Rik	-	RIKEN cDNA 1700096J18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-21187503-3	chr2	21187408	21187608	+	998.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027728, intron 4 of 4)	intron (NM_027728, intron 4 of 4)	17857.0	NM_027728	71233.0	Mm.27658	NM_027728	ENSMUSG00000026679	Enkur	4933434I06Rik|AU016229	enkurin, TRPC channel interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-35109911-2	chr8	35109868	35110068	+	768.791626	f0_balb.idr|f1_balb.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-144278.0	NM_175091	21951.0	Mm.88364	NM_175091	ENSMUSG00000031529	Tnks	4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	protein-coding	2.21208950541369	2.7926172447102	1.81780560834201	2.73129827921158	3.61444276634399	2.34628577676726	3.37710242560657	3.58476950870237	1.58704453356719	0.028045127262292	0.226234045423339
Merged-chr5-139732999-4	chr5	139732917	139733117	+	882.1083369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_174850, intron 1 of 16)	intron (NM_174850, intron 1 of 16)	3316.0	NM_174850	231830.0	Mm.240510	NM_174850	ENSMUSG00000036718	Micall2	A930021H16Rik|JRAB|MICAL-L2|mFLJ00139	MICAL-like 2	protein-coding	0.72674632771332	0.249536587485782	0.244875068915308	0.791694340538533	0.659605158102387	0.250594245276493	0.402727498906836	0.241932914477246	-0.980923909634157	0.622248934417289	1
Merged-chr9-21924208-4	chr9	21924115	21924315	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045606, intron 3 of 4)	intron (NR_045606, intron 3 of 4)	3073.0	NM_001253869	235043.0	Mm.253329	NM_178577	ENSMUSG00000040883	Tmem205	-	transmembrane protein 205	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-21279022-2	chr16	21278922	21279122	+	697.333374	f1_balb.idr|f1_c57bl6.idr	intron (NR_046162, intron 3 of 4)	intron (NR_046162, intron 3 of 4)	17850.0	NR_046162	328646.0	Mm.404748	NR_046162	ENSMUSG00000096918	Gm16863	A830060N17	predicted gene, 16863	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-113000920-6	chr6	113000804	113001004	+	873.2222289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45398.0	NM_001355266	14911.0	Mm.781	NM_008188	ENSMUSG00000030264	Thumpd3	AW556087|Gt(ROSA)26asSor|Gtrosa26as	THUMP domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-21845452-3	chr10	21845368	21845568	+	947.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Arthur1B|DNA|hAT-Tip100	-36716.0	NM_001161845	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-115136968-4	chr13	115136879	115137079	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35015.0	NM_001033228	109700.0	Mm.317280	NM_001033228	ENSMUSG00000042284	Itga1	CD49A|E130012M19Rik|Vla1	integrin alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36087886-3	chr1	36087788	36087988	+	617.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015818, intron 1 of 1)	intron (NM_015818, intron 1 of 1)	19488.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117716508-2	chr10	117716408	117716608	+	608.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5750.0	NM_001288586	17246.0	Mm.22670	NM_010786	ENSMUSG00000020184	Mdm2	1700007J15Rik|AA415488|Mdm-2	transformed mouse 3T3 cell double minute 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-63665718-4	chr15	63665609	63665809	+	904.4249880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	143030.0	NM_031378	83492.0	Mm.335619	NM_031378	ENSMUSG00000079025	Gsdmc	Gsdmc1|Mlze	gasdermin C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-67440854-4	chr7	67440772	67440972	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68014.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	-2.18292257394068	-2.15545247547656	-2.03304972317742	-2.17058342868585	-2.18099422382073	-2.1536522739386	-2.16187909550322	-2.16936197735154	-0.683654500252594	0.846597994014493	1
Merged-chr13-54580982-2	chr13	54580882	54581082	+	607.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_019968, exon 4 of 4)	3' UTR (NM_019968, exon 4 of 4)	5969.0	NM_019968	56795.0	Mm.89484	NM_019968	ENSMUSG00000025870	Arl10	Arl10a|Arm1	ADP-ribosylation factor-like 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98021801-2	chr11	98021701	98021901	+	946.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145121, intron 1 of 13)	intron (NM_145121, intron 1 of 13)	826.0	NM_001282977	12295.0	Mm.41252	NM_031173	ENSMUSG00000020882	Cacnb1	CAB1|Cchb1|Cchlb1	calcium channel, voltage-dependent, beta 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-16307552-3	chr9	16307438	16307638	+	908.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080814, intron 1 of 24)	intron (NM_001080814, intron 1 of 24)	70693.0	NM_001080814	270120.0	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT atypical cadherin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-43530554-4	chr7	43530451	43530651	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111058, intron 3 of 6)	intron (NM_001111058, intron 3 of 6)	2620.0	NM_001111058	12489.0	Mm.140157	NM_021293	ENSMUSG00000004609	Cd33	Siglec-3|gp67	CD33 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128080743-2	chr10	128080643	128080843	+	759.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-2564.0	NM_016774	11947.0	Mm.238973	NM_016774	ENSMUSG00000025393	Atp5b	Atp5f1b	ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-45975338-4	chr8	45975237	45975437	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138668)	promoter-TSS (NM_138668)	-85.0	NM_001033148	69479.0	Mm.158282	NM_001033148	ENSMUSG00000071103	1700029J07Rik	-	RIKEN cDNA 1700029J07 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-60900667-3	chr11	60900600	60900800	+	752.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13092.0	NM_025294	24083.0	Mm.22780	NM_025294	ENSMUSG00000018931	Natd1	AI256713|F3-2|Gm16515|Gtlf3b	N-acetyltransferase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-67355373-2	chr17	67355273	67355473	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008984)	promoter-TSS (NM_008984)	-882.0	NM_001357625	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-110704235-2	chr12	110704135	110704335	+	584.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7840.0	NM_010480	15519.0	Mm.1843	NM_010480	ENSMUSG00000021270	Hsp90aa1	86kDa|89kDa|AL024080|AL024147|Hsp86-1|Hsp89|Hsp90|Hspca|hsp4	heat shock protein 90, alpha (cytosolic), class A member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-20205253-2	chr11	20205153	20205353	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008996, intron 1 of 5)	RSINE1|SINE|B4	3841.0	NM_008996	19324.0	Mm.271944	NM_008996	ENSMUSG00000020149	Rab1a	Gtbp|Rab-1|Rab1|Ypt1|mKIAA3012	RAB1A, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-9470578-4	chr14	9470473	9470673	+	931.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-413522.0	NR_030680	100042415.0	Mm.235938	NR_030680	ENSMUSG00000089686	Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-23445861-4	chr13	23445772	23445972	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-14855.0	NR_015492	320842.0	Mm.487476	NR_015492	ENSMUSG00000085024	C230035I16Rik	-	RIKEN cDNA C230035I16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-13417251-2	chr15	13417151	13417351	+	642.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-243576.0	NM_007666	12563.0	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-70436413-4	chr18	70436298	70436498	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36056.0	NM_029019	170461.0	Mm.83623	NM_029019	ENSMUSG00000079608	Stard6	1700011K09Rik|4833424I06Rik|4933429L05Rik|AI644424	StAR-related lipid transfer (START) domain containing 6	protein-coding	6.52609823041721	6.40353168027227	6.30397314263815	5.90779402181268	6.31942502541321	5.44624375472371	6.73510060125778	5.91209610001918	-0.126876137405116	0.637487181598779	0.982417279970648
Merged-chr13-59853787-2	chr13	59853674	59853874	+	819.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30627.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	0.00741801281685736	0.669061824017262	0.364453184931239	0.015489863263637	0.008622000956994	0.0279784184840242	0.0217082816932485	0.776262988902094	-0.208642611345263	0.924795895566715	1
Merged-chr12-25205364-1	chr12	25205264	25205464	+	544.0	f1_c57bl6.idr	Intergenic	Lx|LINE|L1	76190.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-124948568-2	chr8	124948467	124948667	+	716.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_053207, exon 1 of 5)	exon (NM_053207, exon 1 of 5)	687.0	NM_053207	112405.0	Mm.140619	NM_053207	ENSMUSG00000031987	Egln1	AI503754|C1orf12|HIF-PH2|HPH-2|Hif-p4h-2|ORF13|Phd2|SM-20	egl-9 family hypoxia-inducible factor 1	protein-coding	0.352476634797072	0.212818088213301	0.204461921243797	0.197950471576564	0.92127742472293	0.437273162437091	0.206312880094441	1.24963485313321	3.64217901707782	0.0589208297725565	1
Merged-chr4-58511803-4	chr4	58511670	58511870	+	642.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010336, intron 1 of 3)	L1MB2|LINE|L1	-12367.0	NM_001290486	14745.0	Mm.4772	NM_010336	ENSMUSG00000038668	Lpar1	AI326300|Edg2|Gpcr26|Kdt2|lpA1|vzg-1	lysophosphatidic acid receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-101833779-2	chr5	101833679	101833879	+	889.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172882, exon 67 of 67)	3' UTR (NM_172882, exon 67 of 67)	68649.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-52450830-3	chr16	52450782	52450982	+	844.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009655, intron 1 of 15)	intron (NM_009655, intron 1 of 15)	2199.0	NM_009655	11658.0	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-65101179-2	chr14	65101079	65101279	+	767.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3073.0	NM_001360385	54616.0	Mm.103748	NM_018788	ENSMUSG00000021978	Extl3	2900009G18Rik|AU040105|Ext1l|mKIAA0519	exostoses (multiple)-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-50129497-2	chr11	50129397	50129597	+	568.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1863.0	NM_001290759	76795.0	Mm.290975	NM_029745	ENSMUSG00000036644	Tbc1d9b	-	TBC1 domain family, member 9B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117033954-3	chr10	117033854	117034054	+	750.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11387.0	NM_146242	237560.0	Mm.37320	NM_146242	ENSMUSG00000060187	Lrrc10	D330003I11Rik|Hrlrrp|Serdin1	leucine rich repeat containing 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-102811254-4	chr14	102811149	102811349	+	994.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	171383.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-13434258-2	chr16	13434158	13434358	+	564.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15265.0	NR_030549	100124432.0		NR_030549	ENSMUSG00000076972	Mir193b	Mir193|Mirn193b|mir-193b	microRNA 193b	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120115350-2	chr8	120115250	120115450	+	917.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172286, intron 1 of 12)	intron (NM_172286, intron 1 of 12)	1198.0	NM_001163761	234797.0	Mm.101958	NM_172286	ENSMUSG00000031824	6430548M08Rik	AW049007|Kiaa0513|mKIAA0513	RIKEN cDNA 6430548M08 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-126627631-2	chr3	126627531	126627731	+	648.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025438, intron 2 of 18)	intron (NM_001025438, intron 2 of 18)	30680.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-128283025-1	chr8	128282925	128283125	+	759.0	f0_balb.idr	Intergenic	Intergenic	-4800.0	NR_105822	102465212.0		NR_105822	ENSMUSG00000099326	Mir21c	Gm28013|mmu-mir-21c	microRNA 21c	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89223385-1	chr3	89223285	89223485	+	548.0	f1_balb.idr	intron (NR_149740, intron 12 of 20)	intron (NR_149740, intron 12 of 20)	3813.0	NR_030579	100124470.0		NR_030579	ENSMUSG00000076255	Mir92b	Mirn92b|mir-92b|mmu-mir-92b	microRNA 92b	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-68498807-2	chr11	68498707	68498907	+	556.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_177320)	TTS (NM_177320)	-4212.0	NM_001004435	104709.0	Mm.234573	NM_001004435	ENSMUSG00000046207	Pik3r6	BB220380|p84|p84 PIKAP|p87(PIKAP)|p87PIKAP	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-73946067-2	chr17	73945967	73946167	+	765.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011723, intron 1 of 35)	intron (NM_011723, intron 1 of 35)	4129.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-21168087-4	chr13	21167962	21168162	+	868.366699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11869.0	NM_009054	19720.0	Mm.314056	NM_009054	ENSMUSG00000021326	Trim27	AW538890|Gm19403|Rfp	tripartite motif-containing 27	protein-coding	-0.0727409244974852	-0.422434518301136	-0.426158758078724	0.179143220964325	-0.433058805296815	-0.42159328212632	-0.250935410411249	-0.428523559418687	-2.5489280141202	0.317471584697505	1
Merged-chr5-3421060-4	chr5	3420938	3421138	+	953.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 3 of 7)	intron (NM_009873, intron 3 of 7)	77145.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-117904164-4	chr5	117904051	117904251	+	942.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008712, intron 8 of 27)	intron (NM_008712, intron 8 of 27)	37312.0	NM_008712	18125.0	Mm.44249	NM_008712	ENSMUSG00000029361	Nos1	2310005C01Rik|N-NOS|NC-NOS|NO|NOS|NOS-I|Nos-1|bNOS|nNOS	nitric oxide synthase 1, neuronal	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-62486064-4	chr10	62485984	62486184	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358543, intron 1 of 7)	intron (NM_001358543, intron 1 of 7)	514.0	NM_001113355	30930.0	Mm.260703	NM_133672	ENSMUSG00000020078	Vps26a	AA407240|HB58|Vps26	VPS26 retromer complex component A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-36661785-5	chr16	36661647	36661847	+	850.7333369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019388, intron 1 of 7)	MLT1C|LTR|ERVL-MaLR	4330.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-71352306-3	chr10	71352274	71352474	+	780.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027184, intron 1 of 5)	intron (NM_027184, intron 1 of 5)	4611.0	NM_027184	69718.0	Mm.245867	NM_027184	ENSMUSG00000060733	Ipmk	2410017C19Rik|AA408208|Impk	inositol polyphosphate multikinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132568711-2	chr4	132568611	132568811	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081211, intron 1 of 1)	B4|SINE|B4	4644.0	NM_001081211	19204.0	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-135604809-2	chr3	135604709	135604909	+	725.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008689, intron 15 of 24)	intron (NM_008689, intron 15 of 24)	86738.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	-1.31349849087795	-1.28274354783242	-1.29349452597086	-1.3023256995151	-1.3130151546297	-1.28041376602105	-0.694015972326031	-1.30074492367298	2.57396649482007	0.456321314346772	1
Merged-chr4-148628001-2	chr4	148627903	148628103	+	720.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1007.0	NM_001003899	230908.0	Mm.22453	NM_145556	ENSMUSG00000041459	Tardbp	1190002A23Rik|C85084|TDP-43|Tdp43	TAR DNA binding protein	protein-coding	1.46093765218069	1.88837450714306	0.791201531490327	0.778531300614579	1.11005586512014	1.80337723352224	0.794778977030933	1.4483860775287	0.0631013981414007	0.964518312316727	0.998431161219273
Merged-chr6-120472741-3	chr6	120472732	120472932	+	792.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008359, intron 2 of 12)	intron (NM_008359, intron 2 of 12)	9635.0	NM_008359	16172.0	Mm.4481	NM_008359	ENSMUSG00000002897	Il17ra	AW538159|Cdw217|Il17r|VDw217	interleukin 17 receptor A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-60868608-2	chr2	60868508	60868708	+	591.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	12830.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21136590-4	chr9	21136520	21136720	+	963.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5345.0	NM_001205312	54721.0	Mm.20249	NM_018793	ENSMUSG00000032175	Tyk2	JTK1	tyrosine kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-57711966-2	chr6	57711866	57712066	+	552.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133737, intron 1 of 8)	intron (NM_133737, intron 1 of 8)	9511.0	NM_133737	71835.0	Mm.274904	NM_133737	ENSMUSG00000062190	Lancl2	1700003F10Rik	LanC (bacterial lantibiotic synthetase component C)-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-105898079-1	chr14	105897979	105898179	+	608.0	f0_balb.idr	Intergenic	Intergenic	-1260.0	NM_011897	24064.0	Mm.89982	NM_011897	ENSMUSG00000022114	Spry2	sprouty2	sprouty RTK signaling antagonist 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-132114697-4	chr2	132114606	132114806	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355430, intron 1 of 15)	intron (NM_001355430, intron 1 of 15)	30402.0	NM_001355431	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-61638907-4	chr1	61638827	61639027	+	887.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001081050, exon 1 of 23)	5' UTR (NM_001081050, exon 1 of 23)	103.0	NM_001081050	72823.0	Mm.35153	NM_001081050	ENSMUSG00000052062	Pard3b	1810008K04Rik|2010002N16Rik|2810455B10Rik|Als2cr19|PAR3B|PAR3L|PAR3beta	par-3 family cell polarity regulator beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85468042-2	chr12	85467942	85468142	+	990.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5848.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-24495664-2	chr18	24495564	24495764	+	885.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360807, intron 6 of 7)	intron (NM_001360807, intron 6 of 7)	24793.0	NM_026529	68046.0	Mm.276574	NM_026529	ENSMUSG00000024273	2700062C07Rik	AI195775|C87515	RIKEN cDNA 2700062C07 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-38562311-3	chr16	38562208	38562408	+	708.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001205287)	promoter-TSS (NM_001205287)	-506.0	NM_001205287	67846.0	Mm.310476	NM_026407	ENSMUSG00000002845	Tmem39a	2610033C09Rik	transmembrane protein 39a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-72019068-1	chr1	72018968	72019168	+	768.5	f0_balb.idr	Intergenic	Intergenic	-13873.0	NR_040454	71134.0	Mm.370574	NR_040454	ENSMUSG00000101848	4933417E11Rik	-	RIKEN cDNA 4933417E11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-105902898-2	chr5	105902815	105903015	+	695.299988	f1_balb.idr|f1_c57bl6.idr	intron (NR_030777, intron 5 of 9)	L1_Rod|LINE|L1	26347.0	NM_018759	54367.0	Mm.248876	NM_018759	ENSMUSG00000029290	Zfp326	5730470H14Rik|ZAN75|Znf326	zinc finger protein 326	protein-coding	2.09323803104873	2.67129515624696	2.13597556673728	2.315256837002	2.63118397141996	1.41294825071135	2.39999094681875	2.08815099600049	-0.233299321488183	0.795643302812208	0.998431161219273
Merged-chr3-38519602-3	chr3	38519499	38519699	+	671.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MERVL_2A-int|LTR|ERVL	-34783.0	NM_001167883	99696.0	Mm.290937	NM_001033198	ENSMUSG00000044864	Ankrd50	AI662170|E430012K20Rik|mKIAA1223|mKIAA3019	ankyrin repeat domain 50	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-32202826-4	chr16	32202717	32202917	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23017.0	NM_001033539	328660.0	Mm.441006	NM_001033539	ENSMUSG00000075269	Bex6	B020003O03Rik	brain expressed family member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-72939678-4	chr17	72939581	72939781	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_029999, exon 3 of 3)	3' UTR (NM_029999, exon 3 of 3)	21376.0	NM_029999	77889.0	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-7839128-4	chr9	7838973	7839173	+	778.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2016.0	NM_007465	11797.0	Mm.335659	NM_007465	ENSMUSG00000057367	Birc2	AW146227|Api1|Api2|Birc3|C-IAP1|C330006D17Rik|HIAP1|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF48|cIAP1|cIAP2|mcIAP1	baculoviral IAP repeat-containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-75553323-4	chr3	75553226	75553426	+	678.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019745, intron 1 of 7)	intron (NM_019745, intron 1 of 7)	3526.0	NM_019745	56426.0	Mm.316473	NM_019745	ENSMUSG00000027835	Pdcd10	2410003B13Rik|Ccm3|Tfa15|Tfar15	programmed cell death 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-120578902-3	chr5	120578787	120578987	+	902.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145853, intron 2 of 27)	intron (NM_145853, intron 2 of 27)	9726.0	NM_145853	252972.0	Mm.114054	NM_145853	ENSMUSG00000032741	Tpcn1	5730403B01Rik|Tpc1|mKIAA1169	two pore channel 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-30471802-2	chr15	30471702	30471902	+	559.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355502, intron 2 of 21)	intron (NM_001355502, intron 2 of 21)	299209.0	NM_008729	18163.0	Mm.321648	NM_008729	ENSMUSG00000022240	Ctnnd2	Catnd2|Nprap|neurojugin	catenin (cadherin associated protein), delta 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-47448684-2	chr19	47448557	47448757	+	588.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008018, intron 1 of 14)	intron (NM_008018, intron 1 of 14)	15754.0	NM_001164717	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-32384931-4	chr19	32384830	32385030	+	889.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 1 of 9)	intron (NM_144792, intron 1 of 9)	3119.0	NM_001362423	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	3.21376901478045	3.04808637722854	3.14861469011433	3.44510764021161	3.09642592529326	2.95100615530269	2.97022302779368	2.98341531161918	-0.3879710933213	0.515454765775376	0.947402641287243
Merged-chr3-100488471-4	chr3	100488371	100488571	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142952, intron 1 of 1)	CpG	721.0	NM_001142952	74645.0	Mm.226900	NM_001142952	ENSMUSG00000044468	Fam46c	4930431B09Rik|AI449797	family with sequence similarity 46, member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-20798946-4	chr14	20798852	20799052	+	902.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4713.0	NR_153779	102631887.0	Mm.122292	NR_153779	ENSMUSG00000114241	Gm30108	-	predicted gene, 30108	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59612809-1	chr15	59612709	59612909	+	542.0	f1_balb.idr	Intergenic	Intergenic	-35845.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	-1.8429182434137	-1.8129848525291	-1.82203695700074	-1.54461076807193	-1.84081697472045	-1.81102322372834	-1.81998775896484	-1.82814164409203	-1.43114970378833	0.684630132144154	1
Merged-chr17-63863861-4	chr17	63863728	63863928	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001037997)	promoter-TSS (NM_001037997)	-153.0	NM_001037997	14158.0	Mm.23039	NM_008000	ENSMUSG00000000127	Fer	AV082135|C330004K01Rik|Fert|Fert2	fer (fms/fps related) protein kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135134706-4	chr5	135134617	135134817	+	870.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152882, intron 15 of 16)	intron (NR_152882, intron 15 of 16)	-14994.0	NM_013763	27368.0	Mm.36746	NM_013763	ENSMUSG00000005374	Tbl2	C76179|WS-bTRP	transducin (beta)-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-17871855-4	chr17	17871765	17871965	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12074.0	NM_013521	14293.0	Mm.56951	NM_013521	ENSMUSG00000045551	Fpr1	FPR|LXA4R|fMLF-R	formyl peptide receptor 1	protein-coding	5.85913038094137	5.96896951355687	6.50935492767107	5.32011218786484	5.79148957205951	6.07446952145644	6.76917869163457	5.04037157124444	0.0814181224787805	0.808283182092019	0.998431161219273
Merged-chr9-90195785-1	chr9	90195685	90195885	+	650.0	f1_c57bl6.idr	exon (NM_001326294, exon 20 of 23)	exon (NM_001326294, exon 20 of 23)	32807.0	NM_001311115	108153.0	Mm.102141	NM_001003911	ENSMUSG00000032363	Adamts7	ADAM-TS7|ADAMTS7B	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-73508900-3	chr13	73508792	73508992	+	753.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145376, intron 9 of 13)	intron (NM_145376, intron 9 of 13)	-27855.0	NM_010020	13162.0	Mm.41993	NM_010020	ENSMUSG00000021609	Slc6a3	DAT|Dat1	solute carrier family 6 (neurotransmitter transporter, dopamine), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-31268090-1	chr9	31267990	31268190	+	544.0	f1_c57bl6.idr	Intergenic	Intergenic	-3311.0	NM_001101597	638580.0	Mm.373655	NM_001101597		Gm7244	EG638580	predicted gene 7244	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-36563970-4	chr5	36563871	36564071	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133910, intron 2 of 13)	intron (NM_133910, intron 2 of 13)	18426.0	NM_133910	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-68282632-4	chr10	68282533	68282733	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3907.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	2.19993756683421	1.37872581831231	2.55950051198597	2.32889933246281	1.4334762405032	1.1174936692555	2.12990114509593	1.06761197788742	-1.81746908950816	0.107956885238959	0.513994725832153
Merged-chr7-35063412-2	chr7	35063312	35063512	+	826.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	-6846.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-21536268-4	chr17	21536160	21536360	+	999.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_131123)	promoter-TSS (NR_131123)	-382.0	NR_131123	319870.0	Mm.488274	NR_131123	ENSMUSG00000097781	9330136K24Rik	-	RIKEN cDNA 9330136K24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-186675532-2	chr1	186675432	186675632	+	753.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009367, intron 1 of 6)	intron (NM_009367, intron 1 of 6)	30457.0	NM_009367	21808.0	Mm.18213	NM_009367	ENSMUSG00000039239	Tgfb2	BB105277|Tgf-beta2|Tgfb-2	transforming growth factor, beta 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-154656923-4	chr2	154656836	154657036	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029362)	promoter-TSS (NM_029362)	-90.0	NM_029362	75608.0	Mm.262480	NM_029362	ENSMUSG00000038467	Chmp4b	2010012F05Rik|C76846|Snf7-2	charged multivesicular body protein 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167885246-2	chr2	167885146	167885346	+	569.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47081.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165339035-2	chr2	165338935	165339135	+	640.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D11|SINE|Alu	-12556.0	NM_207706	140579.0	Mm.35064	NM_080287	ENSMUSG00000017670	Elmo2	1190002F24Rik|CED-12	engulfment and cell motility 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-122996336-3	chr4	122996175	122996375	+	741.1190190000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_008506, exon 1 of 2)	5' UTR (NM_008506, exon 1 of 2)	344.0	NM_008506	16918.0	Mm.1055	NM_008506	ENSMUSG00000028654	Mycl	AW536278|L-myc|Lmyc-1|Lmyc1|Mycl1|bHLHe38	v-myc avian myelocytomatosis viral oncogene lung carcinoma derived	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-82828940-2	chr18	82828840	82829040	+	761.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26957.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-116126632-1	chr6	116126532	116126732	+	553.0	f1_balb.idr	intron (NM_177412, intron 3 of 5)	intron (NM_177412, intron 3 of 5)	66742.0	NM_177412	330401.0	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101641474-4	chr11	101641380	101641580	+	844.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	13531.0	NM_025654	66599.0	Mm.41449	NM_025654	ENSMUSG00000010362	Rdm1	2410008M22Rik|AW212028|Rad52b	RAD52 motif 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-39374610-1	chr18	39374510	39374710	+	579.0	f0_balb.idr	3' UTR (NM_175164, exon 23 of 23)	3' UTR (NM_175164, exon 23 of 23)	112635.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55680224-2	chr14	55680124	55680324	+	644.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_145705, exon 6 of 9)	exon (NM_145705, exon 6 of 9)	1593.0	NM_145705	28113.0	Mm.29346	NM_145705	ENSMUSG00000007589	Tinf2	AW552114|D14Wsu146e|Tin2	Terf1 (TRF1)-interacting nuclear factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-39562383-4	chr6	39562288	39562488	+	857.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4554.0	NM_172477	209773.0	Mm.440021	NM_172477	ENSMUSG00000038456	Dennd2a	B930096L08Rik|C130031G22|mKIAA1277	DENN/MADD domain containing 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-53424338-2	chr19	53424238	53424438	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33704.0	NM_172429	76479.0	Mm.313687	NM_172429	ENSMUSG00000025024	Smndc1	-	survival motor neuron domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-139065425-4	chr1	139065323	139065523	+	957.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166501, intron 9 of 21)	intron (NM_001166501, intron 9 of 21)	87766.0	NR_108103	78229.0	Mm.437838	NR_108103	ENSMUSG00000104900	4930596I21Rik	-	RIKEN cDNA 4930596I21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-77923086-2	chr10	77922986	77923186	+	703.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_138301, intron 24 of 33)	intron (NM_138301, intron 24 of 33)	-20550.0	NM_145152	237387.0	Mm.133301	NM_145152	ENSMUSG00000051652	Lrrc3	1300011L04Rik|C21orf102	leucine rich repeat containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128792193-1	chr10	128792093	128792293	+	565.0	f0_c57.idr	intron (NM_021412, intron 2 of 8)	B2_Mm2|SINE|B2	1238.0	NM_021412	58223.0	Mm.131266	NM_021412	ENSMUSG00000025355	Mmp19	-	matrix metallopeptidase 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-48882130-2	chr13	48882030	48882230	+	701.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033268, intron 17 of 17)	intron (NM_001033268, intron 17 of 17)	-11245.0	NM_011078	18676.0	Mm.486213	NM_011078	ENSMUSG00000038025	Phf2	GRC5	PHD finger protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-76611059-3	chr11	76610957	76611157	+	860.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33318.0	NM_198894	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-31594787-4	chr17	31594686	31594886	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027493, intron 6 of 11)	L1MD|LINE|L1	30013.0	NM_016670	18771.0	Mm.259295	NM_016670	ENSMUSG00000006705	Pknox1	D17Wsu76e|PREP1	Pbx/knotted 1 homeobox	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-53755467-2	chr11	53755367	53755567	+	574.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	8187.0	NR_106131	102465772.0		NR_106131	ENSMUSG00000099153	Mir7671	Gm27802|mmu-mir-7671	microRNA 7671	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83815771-2	chr11	83815671	83815871	+	677.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35098.0	NM_001291268	21410.0	Mm.7226	NM_009330	ENSMUSG00000020679	Hnf1b	HNF-1-beta|HNF-1B|HNF-1Beta|Hnf1beta|LFB3|Tcf-2|Tcf2|vHNF1	HNF1 homeobox B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-33962225-3	chr2	33962119	33962319	+	854.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	-74273.0	NM_175184	72543.0	Mm.254914	NM_175184	ENSMUSG00000038740	Mvb12b	2610200O14Rik|2610528K11Rik|AI414895|Fam125b	multivesicular body subunit 12B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-11137054-2	chr16	11136954	11137154	+	664.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_027502, exon 23 of 23)	non-coding (NR_027502, exon 23 of 23)	-2522.0	NM_029582	106200.0	Mm.291015	NM_029582	ENSMUSG00000022498	Txndc11	2810408E11Rik|AI427833|EFP1|Txdc11	thioredoxin domain containing 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-87354339-4	chr16	87354227	87354427	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001159331, exon 1 of 5)	exon (NM_001159331, exon 1 of 5)	142.0	NM_026366	67768.0	Mm.296532	NM_026366	ENSMUSG00000044442	N6amt1	5830445C04Rik|Hemk2|Pred28	N-6 adenine-specific DNA methyltransferase 1 (putative)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-41045297-3	chr8	41045204	41045404	+	862.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005863, intron 5 of 13)	intron (NM_001005863, intron 5 of 13)	-3373.0	NM_001005865	102103.0	Mm.149438	NM_001005863	ENSMUSG00000045636	Mtus1	AI481402|ATBP135|Atip1|B430010I23Rik|B430305I03Rik|C85752|Cctsg1-440|MD44|MTSG1|mKIAA1288	mitochondrial tumor suppressor 1	protein-coding	1.53052266207582	0.9321156815717	1.55786702937625	1.61867510592565	1.20692215904677	0.935263628810143	1.68399211701156	1.51982045190058	-0.252485604780525	0.84348727483814	0.998431161219273
Merged-chr9-99143109-4	chr9	99142986	99143186	+	907.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	-2875.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-74925102-5	chr15	74925092	74925292	+	820.3905030000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29859.0	NM_001164039	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	0.472227070227976	1.17381301803152	0.48537485854914	0.887275327002381	0.730197959638753	0.49331603317587	0.486799216642167	1.23585631989018	-0.029809648513613	0.986769558601105	1
Merged-chr5-135715787-3	chr5	135715683	135715883	+	951.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008898, intron 1 of 15)	intron (NM_008898, intron 1 of 15)	20106.0	NR_106001	102466791.0		NR_106001	ENSMUSG00000099197	Mir7034	Gm27372|mmu-mir-7034	microRNA 7034	ncRNA	0.710085932588911	1.04206328047956	0.754385297982042	0.738154192176947	2.09262282953393	1.8660475171626	2.07794959488726	0.980060315114823	4.54157644685391	0.0021094122543793	0.0347966015967591
Merged-chr7-127470396-2	chr7	127470296	127470496	+	735.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1218.0	NM_145589	233895.0	Mm.44183	NM_145589	ENSMUSG00000030822	Prr14	BC006909	proline rich 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-34060193-4	chr11	34060082	34060282	+	679.974976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010696, intron 3 of 20)	intron (NM_010696, intron 3 of 20)	13254.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-47027774-2	chr7	47027674	47027874	+	813.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19360.0	NM_175318	101685.0	Mm.155687	NM_175318	ENSMUSG00000049516	Spty2d1	5830435K17Rik|AI852426|P16H6	SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-102430381-4	chr11	102430285	102430485	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008175)	promoter-TSS (NM_008175)	63.0	NM_008175	14824.0	Mm.1568	NM_008175	ENSMUSG00000034708	Grn	Pgrn|epithelin	granulin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4741795-3	chr19	4741663	4741863	+	815.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021287, intron 19 of 36)	LTR16C|LTR|ERVL	-14762.0	NM_025717	66704.0	Mm.396734	NM_025717	ENSMUSG00000033760	Rbm4b	4921506I22Rik|AI504630|AI506404|Lark2|Neosin	RNA binding motif protein 4B	protein-coding	0.629776747516285	0.983065848126849	1.13871599148067	0.658329287813921	0.634031397906357	0.99237632027204	0.51371848299223	0.661327606022599	-0.97604356829077	0.527224227730034	1
Merged-chr3-87401454-4	chr3	87401396	87401596	+	933.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310545, intron 10 of 10)	intron (NM_001310545, intron 10 of 10)	25109.0	NM_178165	229499.0	Mm.255203	NM_153090	ENSMUSG00000059994	Fcrl1	A230020G22Rik|Bxmas1|Bxmh1|Bxmh1b|Fcrh1|Fcrh1l|Fcrh1s|Ifgp1	Fc receptor-like 1	protein-coding	4.1973576398778	3.17314597824831	4.40399092740948	4.50481180357367	1.37150066988627	1.93378319331717	2.3256182933621	3.18393435806956	-2.80613112158991	5.41799022385104e-05	0.00186438948486897
Merged-chr7-127289516-3	chr7	127289415	127289615	+	891.0833130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6745.0	NM_001253873	16408.0	Mm.1618	NM_008400	ENSMUSG00000030830	Itgal	(p180)|Cd11a|LFA-1|LFA-1A|Ly-15|Ly-21	integrin alpha L	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-25422754-4	chr2	25422584	25422784	+	906.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289453)	promoter-TSS (NM_001289453)	-558.0	NM_001289453	14347.0	Mm.1203	NM_013524	ENSMUSG00000036587	Fut7	AI853193|FTVII|Fuc-TVII|FucT-VII	fucosyltransferase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-109552740-1	chr5	109552640	109552840	+	550.0	f1_balb.idr	Intergenic	Intergenic	6253.0	NM_016715	57914.0	Mm.35771	NM_016715	ENSMUSG00000033467	Crlf2	CRLM2|Ly114|Tpte2|Tslpr	cytokine receptor-like factor 2	protein-coding	-1.56355737717652	-1.81244775989375	-1.82128546162293	-1.82854501295842	-1.83962066705452	-1.81053259306168	-1.81928479966835	-1.82724555674025	-1.28500227969968	0.715751224811686	1
Merged-chr10-118051677-1	chr10	118051577	118051777	+	894.0	f1_c57bl6.idr	Intergenic	L1ME4b|LINE|L1	-90110.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	-1.22315906685268	-1.19557143632602	-1.20673282037136	-0.55836125556573	-1.22265483704505	-1.19315271784257	-1.20420612767407	-1.21425999345206	-2.67891099987134	0.437057736398543	1
Merged-chr7-62420150-1	chr7	62420050	62420250	+	782.0	f0_balb.idr	promoter-TSS (NM_011746)	promoter-TSS (NM_011746)	-11.0	NM_011746	22652.0	Mm.146	NM_011746	ENSMUSG00000070527	Mkrn3	D7H15S9-1|Zfp127	makorin, ring finger protein, 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-157443896-3	chr1	157443759	157443959	+	820.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14709.0	NM_001356418	226527.0	Mm.215960	NM_001033284	ENSMUSG00000033488	Cryzl2	-	crystallin zeta like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91834245-4	chr16	91834170	91834370	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110275, intron 16 of 28)	URR1B|DNA|hAT-Charlie	97360.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-69655651-3	chr18	69655539	69655739	+	927.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 14 of 19)	intron (NM_001361128, intron 14 of 19)	-269920.0	NM_201362	381175.0	Mm.266831	NM_201362	ENSMUSG00000038903	Ccdc68	BC046343	coiled-coil domain containing 68	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-38773040-3	chr16	38772949	38773149	+	621.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_178924)	TTS (NM_178924)	27154.0	NM_178924	22268.0	Mm.130793	NM_178924	ENSMUSG00000049436	Upk1b	AI413235|Tspan20|UPIb|Upk1	uroplakin 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-95250303-4	chr4	95250220	95250420	+	891.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-198098.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-121009339-4	chr4	121009234	121009434	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133716, intron 1 of 9)	intron (NM_133716, intron 1 of 9)	7913.0	NM_133716	69780.0	Mm.271819	NM_133716	ENSMUSG00000032870	Smap2	1810031K02Rik|AA408614|Smap1l	small ArfGAP 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-38120728-4	chr16	38120605	38120805	+	669.93335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347232, intron 1 of 11)	intron (NM_001347232, intron 1 of 11)	-31445.0	NR_033221	414072.0	Mm.483602	NR_033221		BC031361	-	cDNA sequence BC031361	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-23307048-2	chr16	23306948	23307148	+	877.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252506, intron 1 of 6)	intron (NM_001252506, intron 1 of 6)	16578.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44130907-1	chr9	44130807	44131007	+	649.0	f1_balb.idr	intron (NR_152189, intron 1 of 1)	intron (NR_152189, intron 1 of 1)	3578.0	NR_152189	100038560.0	Mm.429758	NR_152189		Gm10687	-	predicted gene 10687	ncRNA	-1.84371485578039	-1.81332821174849	-1.82251738371298	-1.83006564316449	-1.84158176955426	-1.81133687985023	-1.5312619047181	-1.82871450833159	1.60090129203521	0.64914985597185	1
Merged-chr11-21220920-4	chr11	21220821	21221021	+	976.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18111.0	NM_139061	245944.0	Mm.170103	NM_139061	ENSMUSG00000020128	Vps54	Hcc8|Vps54l|mSLP8|wr	VPS54 GARP complex subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-59775145-2	chr12	59775045	59775245	+	598.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR10D2|LTR|ERVK	-555662.0	NM_001033156	70611.0	Mm.311026	NM_001033156	ENSMUSG00000035329	Fbxo33	5730501N20Rik|AI642135	F-box protein 33	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115562676-1	chr5	115562576	115562776	+	919.0	f1_c57bl6.idr	intron (NM_007475, intron 6 of 6)	intron (NM_007475, intron 6 of 6)	-2587.0	NM_172719	231659.0	Mm.153014	NM_172719	ENSMUSG00000041638	Gcn1l1	4932409G22|AL022764|G431004K08Rik|GCN1L|Gcn1|mKIAA0219	GCN1 general control of amino-acid synthesis 1-like 1 (yeast)	protein-coding	0.780365155580754	1.06062309763653	0.694903723793732	1.61308334307295	0.467858238993881	0.501650067016342	1.02230664375533	0.481461780100424	-2.31218361322665	0.161578451483913	0.622415965615578
Merged-chr9-21852660-4	chr9	21852543	21852743	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177030)	promoter-TSS (NM_177030)	-8.0	NM_177030	319899.0	Mm.128153	NM_177030	ENSMUSG00000032198	Dock6	2410095B20Rik|4931431C02Rik|C330023D02Rik|mKIAA1395	dedicator of cytokinesis 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-19656992-2	chr2	19656892	19657092	+	676.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033642, exon 1 of 1)	non-coding (NR_033642, exon 1 of 1)	905.0	NR_033642	100041244.0	Mm.407223	NR_033642		Gm3230	-	predicted gene 3230	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-59684962-4	chr1	59684875	59685075	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018868)	promoter-TSS (NM_018868)	-31.0	NM_018868	55989.0	Mm.220367	NM_018868	ENSMUSG00000026020	Nop58	MSSP|Nol5|SIK|nop5	NOP58 ribonucleoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116949961-2	chr11	116949861	116950061	+	678.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172948, intron 8 of 16)	intron (NM_172948, intron 8 of 16)	31098.0	NM_172948	268510.0	Mm.35141	NM_172948	ENSMUSG00000043857	Mgat5b	C330018B01|GnT-IX|mGnTVB	mannoside acetylglucosaminyltransferase 5, isoenzyme B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-84684155-2	chr17	84684055	84684255	+	680.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347418, intron 1 of 12)	intron (NM_001347418, intron 1 of 12)	1034.0	NM_026180	67470.0	Mm.26581	NM_026180	ENSMUSG00000024254	Abcg8	1300003C16Rik|AI114946|sterolin-2	ATP binding cassette subfamily G member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-25059798-2	chr16	25059698	25059898	+	1000.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040374, exon 1 of 3)	non-coding (NR_040374, exon 1 of 3)	159.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-86046315-4	chr12	86046204	86046404	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081423, intron 33 of 33)	L1MB3|LINE|L1	32737.0	NM_009368	21809.0	Mm.3992	NM_009368	ENSMUSG00000021253	Tgfb3	TGF-beta-3|Tgfb-3	transforming growth factor, beta 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-149207279-4	chr6	149207181	149207381	+	621.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18569.0	NM_001113424	232566.0	Mm.209147	NM_001113424	ENSMUSG00000068250	Amn1	5830467E07Rik|A230083D09|C730024G19Rik	antagonist of mitotic exit network 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-68520086-6	chr11	68520061	68520261	+	884.888916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004435, intron 1 of 19)	intron (NM_001004435, intron 1 of 19)	17142.0	NR_126154	104709.0	Mm.234573	NM_001004435	ENSMUSG00000046207	Pik3r6	BB220380|p84|p84 PIKAP|p87(PIKAP)|p87PIKAP	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-35754021-4	chr3	35753930	35754130	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029570)	promoter-TSS (NM_029570)	-33.0	NR_151626	76295.0	Mm.239416	NM_029570	ENSMUSG00000037400	Atp11b	1110019I14Rik|ATPIF|ATPIR|mKIAA0956	ATPase, class VI, type 11B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-11783540-2	chr2	11783440	11783640	+	694.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177268, intron 3 of 6)	intron (NM_177268, intron 3 of 6)	5787.0	NM_177268	320816.0	Mm.260201	NM_177268	ENSMUSG00000047909	Ankrd16	2810455F06Rik|AI646698|D430029B21Rik	ankyrin repeat domain 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-68583828-1	chr13	68583728	68583928	+	548.0	f0_balb.idr	non-coding (NR_138477, exon 2 of 7)	non-coding (NR_138477, exon 2 of 7)	1618.0	NR_138478	69577.0	Mm.23670	NM_027123	ENSMUSG00000021532	Fastkd3	2310010B21Rik|AW048587	FAST kinase domains 3	protein-coding	-1.17814285744693	-0.989180714831771	-1.16946398530324	-1.17540151735932	-1.17773653914503	-0.986846137495659	-1.16702518990527	-0.881038771312099	1.39502764631109	0.646097979507373	1
Merged-chr8-13106434-2	chr8	13106334	13106534	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146207, intron 2 of 19)	intron (NM_146207, intron 2 of 19)	713.0	NM_146207	99375.0	Mm.212861	NM_146207	ENSMUSG00000031446	Cul4a	2810470J21Rik|AW495282	cullin 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-17589835-4	chr6	17589714	17589914	+	853.2708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47196.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	1.38458167438795	2.0994780762104	0.817362318540692	1.34013891364505	1.39764662326588	0.837770558250248	0.821082592333614	1.69946374312324	-0.839436851631058	0.544266037003686	0.955718203527695
Merged-chr5-30664139-2	chr5	30664039	30664239	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2747.0	NM_007681	12615.0	Mm.290563	NM_007681	ENSMUSG00000029177	Cenpa	Cenp-A	centromere protein A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-135631969-4	chr7	135631881	135632081	+	841.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316679, intron 1 of 19)	intron (NM_001316679, intron 1 of 19)	-19918.0	NM_001316681	19267.0	Mm.945	NM_011212	ENSMUSG00000041836	Ptpre	PTPe|PTPepsilon|RPTPepsilon	protein tyrosine phosphatase, receptor type, E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-41017656-3	chr14	41017553	41017753	+	692.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Kanga1|DNA|TcMar-Tc2	-3820.0	NM_001316737	70564.0	Mm.27227	NM_027464	ENSMUSG00000021792	Fam213a	5730469M10Rik|AU040822|Adrx|Pamm	family with sequence similarity 213, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-56977295-4	chr1	56977208	56977408	+	849.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358580, intron 1 of 11)	CpG	1342.0	NM_001358581	212712.0	Mm.145599	NM_139146	ENSMUSG00000038331	Satb2	mKIAA1034	special AT-rich sequence binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-36168251-2	chr17	36168151	36168351	+	867.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081032, intron 1 of 7)	CpG-6350	286.0	NM_001081032	667977.0	Mm.441651	NM_001081032	ENSMUSG00000073402	Gm8909	EG667977|H2-Tw5l|H2-gs17	predicted gene 8909	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167864444-4	chr2	167864346	167864546	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-67881.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-97776432-2	chr3	97776332	97776532	+	554.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039376, intron 8 of 46)	intron (NM_001039376, intron 8 of 46)	-8418.0	NR_110360	83679.0	Mm.129840	NM_031401	ENSMUSG00000038170	Pde4dip	4732458A06Rik|9430063L05Rik|C87016|D130016K21Rik|D3Bwg1078e|Usmg4|mKIAA0454	phosphodiesterase 4D interacting protein (myomegalin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-85517273-5	chr8	85517212	85517412	+	698.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173866, intron 7 of 11)	intron (NM_173866, intron 7 of 11)	24695.0	NM_173866	108682.0	Mm.200423	NM_173866	ENSMUSG00000031700	Gpt2	4631422C05Rik|ALT2|AU014768|AU041193|C87201	glutamic pyruvate transaminase (alanine aminotransferase) 2	protein-coding	0.989990713821926	1.62027330807677	1.45196159584036	1.18510287814001	0.532756068160462	0.571960866579751	0.5594610419023	0.548604067908928	-4.79805394772398	0.00317562618641766	0.0471556848633929
Merged-chr2-125782112-2	chr2	125782013	125782213	+	789.233337	f1_balb.idr|f1_c57bl6.idr	intron (NM_177608, intron 1 of 17)	intron (NM_177608, intron 1 of 17)	757.0	NM_177608	70354.0	Mm.138091	NM_133725	ENSMUSG00000035093	Secisbp2l	3110001I20Rik|AI504340|C630011I23	SECIS binding protein 2-like	protein-coding	0.880938404637892	0.999977077265053	1.32583040107784	1.1761639576912	1.37304477585713	0.62347249017923	0.613568836799535	0.605059878153261	-1.11718927202947	0.478219762055632	0.928092227925527
Merged-chr17-65113507-2	chr17	65113407	65113607	+	718.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-277436.0	NM_030031	78057.0	Mm.109380	NM_030031	ENSMUSG00000024088	4930583I09Rik	-	RIKEN cDNA 4930583I09 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-60927445-4	chr11	60927331	60927531	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027800, intron 1 of 1)	intron (NR_027800, intron 1 of 1)	4436.0	NR_027800	24082.0	Mm.46270	NM_025293	ENSMUSG00000042549	Map2k3os	F3-1|Gm16516|Gtlf3a	mitogen-activated protein kinase kinase 3, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-124625963-2	chr2	124625863	124626063	+	701.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291000, intron 1 of 18)	intron (NM_001291000, intron 1 of 18)	15667.0	NM_172537	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-61130457-3	chr18	61130317	61130517	+	886.611084	f1_balb.idr|f1_c57bl6.idr	TTS (NM_178277)	TTS (NM_178277)	12949.0	NR_105949	102466212.0		NR_105949	ENSMUSG00000098389	Mir6983	Gm27496|mmu-mir-6983	microRNA 6983	ncRNA	0.103012269880757	-0.223951984319616	-0.227645611183017	0.0439484809353616	-0.234450493901487	0.104970403656988	-0.226833274299094	0.0481021587961026	-0.0138420687043397	0.995191962950069	1
Merged-chr9-45938356-1	chr9	45938256	45938456	+	542.0	f1_c57bl6.idr	3' UTR (NM_172257, exon 26 of 26)	3' UTR (NM_172257, exon 26 of 26)	1234.0	NR_106055	102465659.0		NR_106055	ENSMUSG00000098327	Mir7087	Gm27273|mmu-mir-7087	microRNA 7087	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-33908392-2	chr17	33908292	33908492	+	559.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045146, exon 2 of 2)	non-coding (NR_045146, exon 2 of 2)	786.0	NR_045146	407803.0	Mm.250393	NR_045146	ENSMUSG00000092564	BC051226	-	cDNA sequence BC051226	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-90214215-4	chr7	90214105	90214305	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51227.0	NM_029256	75338.0	Mm.487222	NM_029256	ENSMUSG00000030617	Ccdc83	4930549K11Rik|4930554C01Rik|4932423M01Rik	coiled-coil domain containing 83	protein-coding	4.18403854970467	4.3957311528009	4.71263307363491	4.55759888039573	3.67462927283998	3.8814054685086	3.66598979997846	3.25610058772245	-1.14617227867796	0.00870798932938529	0.0985645811075139
Merged-chr11-69981262-4	chr11	69981164	69981364	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026017)	promoter-TSS (NM_026017)	-29.0	NM_018740	54351.0	Mm.13430	NM_018740	ENSMUSG00000018565	Elp5	Derp6|Rai12	elongator acetyltransferase complex subunit 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-9647172-3	chr4	9647074	9647274	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290367, intron 1 of 22)	intron (NM_001290367, intron 1 of 22)	-3457.0	NM_001177852	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-102032690-3	chr7	102032594	102032794	+	927.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029211, intron 4 of 8)	MTC|LTR|ERVL-MaLR	-14539.0	NM_010531	16068.0	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10297185-4	chr19	10297086	10297286	+	891.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198114, intron 1 of 19)	intron (NM_198114, intron 1 of 19)	7691.0	NM_198114	269060.0	Mm.329718	NM_198114	ENSMUSG00000035735	Dagla	Nsddr	diacylglycerol lipase, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34314285-1	chr17	34314185	34314385	+	759.0	f1_c57bl6.idr	exon (NM_010382, exon 3 of 6)	exon (NM_010382, exon 3 of 6)	8418.0	NM_010382	14969.0	Mm.22564	NM_010382	ENSMUSG00000060586	H2-Eb1	Eb|H-2Eb|H2Eb|Ia-4|Ia4	histocompatibility 2, class II antigen E beta	protein-coding	2.08996692198235	1.39625413343082	1.16467554740238	2.07310688235538	1.7253065257427	1.20708895921955	1.17241982537887	0.927886745179394	-1.4932682296838	0.222936201605652	0.714791840691861
Merged-chr4-150013770-8	chr4	150013592	150013792	+	985.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-4669.0	NM_173371	100198.0	Mm.22183	NM_173371	ENSMUSG00000028980	H6pd	AI785303|G6pd1|Gpd-1|Gpd1	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	protein-coding	1.37768378683726	1.67915832206411	1.40306399781413	0.951340984034225	1.06081864467554	1.00827948403175	1.14734038058991	0.767723197873861	-1.68942233208373	0.206205569470894	0.69404930498741
Merged-chr2-181376059-2	chr2	181375959	181376159	+	733.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001048148, intron 1 of 5)	B3|SINE|B2	-5176.0	NM_023684	72699.0	Mm.440138	NM_023684	ENSMUSG00000090077	Lime1	2810038K19Rik|LIME	Lck interacting transmembrane adaptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30431964-4	chr7	30431856	30432056	+	807.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER91B|DNA|hAT-Tip100	8681.0	NM_172142	243910.0	Mm.386878	NM_172142	ENSMUSG00000036931	Nfkbid	I-kappa-B-delta|IkappaBNS|ikB-delta	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	protein-coding	2.99077882527543	2.56537976513131	1.98332599145379	1.92741335181702	3.49225134499407	3.21973171134035	2.18829749217885	2.54218735370422	0.985690086391897	0.212520769944856	0.702047781144169
Merged-chr10-98948229-4	chr10	98948117	98948317	+	892.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359507, intron 1 of 21)	intron (NM_001359507, intron 1 of 21)	33065.0	NM_026482	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-60826893-2	chr11	60826793	60826993	+	738.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR31D_MM|LTR|ERVK	-3738.0	NM_001172112	216820.0	Mm.21475	NM_145428	ENSMUSG00000042569	Dhrs7b	BC003479|C79874|C80074|PexRAP	dehydrogenase/reductase (SDR family) member 7B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-64945937-3	chr8	64945860	64946060	+	739.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-1225.0	NM_001163747	73067.0	Mm.294445	NM_028427	ENSMUSG00000025521	Tmem192	3110005G23Rik	transmembrane protein 192	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80967587-3	chr10	80967481	80967681	+	678.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038655, intron 2 of 3)	intron (NM_001038655, intron 2 of 3)	33784.0	NM_001038655	14708.0	Mm.222496	NM_010319	ENSMUSG00000048240	Gng7	AI840417	guanine nucleotide binding protein (G protein), gamma 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-31454179-2	chr15	31454079	31454279	+	856.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145852)	promoter-TSS (NM_145852)	-490.0	NM_145852	252967.0	Mm.436668	NM_145852	ENSMUSG00000022236	Ropn1l	ASP|AV047578|Akapasp	ropporin 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-66341731-2	chr9	66341631	66341831	+	975.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus4|LINE|L1	-8719.0	NM_145617	235439.0	Mm.244179	NM_145617	ENSMUSG00000038664	Herc1	2810449H11Rik|B230218H07|D130015N03Rik|tbl	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115359046-4	chr5	115358972	115359172	+	889.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10117.0	NM_007748	12861.0	Mm.43415	NM_007748	ENSMUSG00000041697	Cox6a1	VIaL	cytochrome c oxidase subunit VIa polypeptide 1	protein-coding	-1.50561175621786	-1.47331375025452	-1.02203377115094	-1.49110398925286	-1.50334449591826	-1.47119716082604	-1.48086985756939	-1.48966786617048	-2.07776723614574	0.550394407909386	1
Merged-chr11-118401232-3	chr11	118401135	118401335	+	757.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011150, intron 1 of 5)	intron (NM_011150, intron 1 of 5)	724.0	NM_011150	19039.0	Mm.3152	NM_011150	ENSMUSG00000033880	Lgals3bp	90K|CyCAP|MAC-2BP|Ppicap|Tango10b	lectin, galactoside-binding, soluble, 3 binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-52318657-3	chr12	52318540	52318740	+	939.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	161969.0	NR_136881	102638611.0	Mm.363799	NR_136881	ENSMUSG00000111982	Gm35135	-	predicted gene, 35135	ncRNA	0.98669834310388	1.3044285512411	1.03307597214427	2.20363849981228	1.63170494139258	1.84171882284781	2.11528519811359	1.94656077802423	1.13614845210738	0.342337092993766	0.843489544525844
Merged-chr8-22861682-4	chr8	22861588	22861788	+	999.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081149, intron 2 of 17)	intron (NM_001081149, intron 2 of 17)	2149.0	NM_001081149	244349.0	Mm.182776	NM_001081149	ENSMUSG00000031540	Kat6a	1500036M03|9930021N24Rik|MOZ|Myst3|Zfp220	K(lysine) acetyltransferase 6A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-20398407-4	chr10	20398294	20398494	+	943.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_013875, exon 13 of 13)	3' UTR (NM_013875, exon 13 of 13)	50575.0	NM_027930	71804.0	Mm.262151	NM_027930	ENSMUSG00000019992	Mtfr2	2610016C23Rik|4933412C16Rik|Dufd1|Fam54a	mitochondrial fission regulator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-10595346-2	chr5	10595246	10595446	+	606.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	-269683.0	NR_003596	623849.0	Mm.335888	NR_003596	ENSMUSG00000091422	Gm6455	EG623849	predicted gene 6455	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-86021113-2	chr6	86021013	86021213	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_012013)	TTS (NM_012013)	3922.0	NM_012013	26910.0	Mm.8024	NM_012013	ENSMUSG00000030001	Figla	FIGalpha|bHLHc8	folliculogenesis specific basic helix-loop-helix	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-33443742-4	chr8	33443644	33443844	+	917.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40567.0	NR_033589	628431.0	Mm.376526	NR_033589		Hmgb1-rs17	Hmg1-rs17	high mobility group box 1, related sequence 17	pseudo	5.82355683706974	5.77165077735548	5.72914527431042	5.18450191164644	4.29349201706167	4.89545699295615	4.29488521722492	3.94766859738739	-1.49049268461103	8.21202936205135e-06	0.000389952222767383
Merged-chr4-147402434-4	chr4	147402330	147402530	+	874.5833130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039209, intron 1 of 2)	B2_Mm2|SINE|B2	-150847.0	NM_001014397	433804.0	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154	zinc finger protein 985	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-143530886-2	chr5	143530786	143530986	+	774.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2855.0	NM_001347530	19353.0	Mm.292510	NM_009007	ENSMUSG00000001847	Rac1	AL023026|D5Ertd559e	Rac family small GTPase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-36942947-1	chr11	36942847	36943047	+	545.0	f1_c57bl6.idr	intron (NM_011856, intron 1 of 28)	intron (NM_011856, intron 1 of 28)	1294.0	NM_001290702	23964.0	Mm.439889	NM_011856	ENSMUSG00000049336	Tenm2	Odz2|Odz3|Ten-2|Ten-m2	teneurin transmembrane protein 2	protein-coding	0.409799202766002	-0.0908650625218349	0.065947810092431	0.0508594898210289	0.24595992756467	0.0898554880430564	-0.0940874779627089	-0.0976134779865968	-0.703325154349215	0.737076204086759	1
Merged-chr9-61858056-2	chr9	61857956	61858156	+	667.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56454.0	NM_018853	56040.0	Mm.3158	NM_018853	ENSMUSG00000007892	Rplp1	2410042H16Rik|Arpp1|C430017H15Rik	ribosomal protein, large, P1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-68691795-4	chr11	68691697	68691897	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175260)	promoter-TSS (NM_175260)	-118.0	NM_175260	77579.0	Mm.218233	NM_175260	ENSMUSG00000020900	Myh10	5730504C04Rik|9330167F11Rik|Fltn|Myhn-2|Myhn2|NMHC II-B|NMHC-B|NMHCII-B|NMMHC II-b|NMMHC-B|NMMHC-IIB|SMemb|mKIAA3005	myosin, heavy polypeptide 10, non-muscle	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-53707338-2	chr8	53707238	53707438	+	691.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68273.0	NM_146208	234258.0	Mm.281749	NM_146208	ENSMUSG00000039396	Neil3	AI449477|BC034753|C85903	nei like 3 (E. coli)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-103382081-4	chr11	103382002	103382202	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183034, intron 5 of 11)	intron (NM_183034, intron 5 of 11)	-18410.0	NM_001205236	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125192153-4	chr6	125192062	125192262	+	998.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025595)	promoter-TSS (NM_025595)	-38.0	NM_025595	66493.0	Mm.138749	NM_025595	ENSMUSG00000030335	Mrpl51	2610511M02Rik|CDA09|HSPC241|Mrp64	mitochondrial ribosomal protein L51	protein-coding	3.67467831477565	3.97045901361951	4.16018220923264	3.49638647267318	3.49841852695122	3.75435152506374	3.71404613280779	4.89917900331839	0.352752030900976	0.4909222804164	0.934345795476137
Merged-chr11-100555286-2	chr11	100555186	100555386	+	622.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_028918, intron 7 of 11)	intron (NM_028918, intron 7 of 11)	9654.0	NM_028918	74407.0	Mm.31590	NM_028918	ENSMUSG00000006784	Ttc25	4933404O19Rik	tetratricopeptide repeat domain 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-85048441-2	chr2	85048341	85048541	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2019.0	NM_001081260	228140.0	Mm.23606	NM_001081260	ENSMUSG00000033955	Tnks1bp1	Tab182|mKIAA1741	tankyrase 1 binding protein 1	protein-coding	2.98429331454489	3.25015160370026	3.71679818390808	3.5507129274754	3.18224695530214	2.56496549386313	4.03549607049119	3.42281174334743	0.0135998278878363	0.981871575991519	0.998431161219273
Merged-chr5-64040888-2	chr5	64040788	64040988	+	956.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-4085.0	NR_045384	74757.0	Mm.159329	NR_045384	ENSMUSG00000106219	5830416I19Rik	-	RIKEN cDNA 5830416I19 gene	ncRNA	0.564757597630939	-0.14335087553425	-0.148437607068518	-0.152365861637977	-0.157923045311317	-0.142204951731827	0.438950398916901	0.018018070918232	-0.102025329213124	0.965370566063746	1
Merged-chr4-150486333-4	chr4	150486272	150486472	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 7 of 22)	intron (NM_001085492, intron 7 of 22)	165802.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-12591704-1	chr19	12591604	12591804	+	543.0	f1_c57bl6.idr	intron (NR_015503, intron 1 of 1)	intron (NR_015503, intron 1 of 1)	4862.0	NR_015503	74333.0	Mm.329744	NR_015503	ENSMUSG00000086213	A330040F15Rik	-	RIKEN cDNA A330040F15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-170055689-3	chr2	170055587	170055787	+	933.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15091.0	NR_033634	100043910.0	Mm.468546	NR_033632	ENSMUSG00000097065	A630075F10Rik	4831414D02|Gm4722	RIKEN cDNA A630075F10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-66937324-2	chr16	66937224	66937424	+	568.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347247, intron 1 of 9)	intron (NM_001347247, intron 1 of 9)	280206.0	NR_040512	75501.0	Mm.394300	NR_040512	ENSMUSG00000092599	1700010K23Rik	-	RIKEN cDNA 1700010K23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-54522825-4	chr11	54522730	54522930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175258)	promoter-TSS (NM_175258)	-15.0	NM_001252494	192786.0	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21619394-1	chr9	21619294	21619494	+	908.0	f1_balb.idr	intron (NM_001357764, intron 1 of 34)	RSINE1|SINE|B4	3225.0	NM_001174078	20586.0	Mm.286593	NM_011417	ENSMUSG00000032187	Smarca4	BAF190A|Brg1|HP1-BP72|SNF2beta|SW1/SNF|b2b508.1Clo|b2b692Clo	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122988556-2	chr5	122988465	122988665	+	603.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045820)	promoter-TSS (NR_045820)	534.0	NM_001003953	30841.0	Mm.86406	NM_013910	ENSMUSG00000029475	Kdm2b	Cxxc2|Fbl10|Fbxl10|Jhdm1b|PCCX2	lysine (K)-specific demethylase 2B	protein-coding	0.793845356438172	1.04826735747102	0.438236429847892	0.594360277310787	0.802591868124591	0.640151931277846	0.895611701723782	0.433698669759879	-0.210556212525685	0.897156091498058	1
Merged-chr10-62230704-2	chr10	62230604	62230804	+	857.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_197996, intron 1 of 7)	CpG	514.0	NM_197996	70423.0	Mm.416781	NM_197996	ENSMUSG00000037031	Tspan15	1110036D12Rik|2700063A19Rik|AW048364|Tm4sf15	tetraspanin 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-87447030-7	chr17	87446939	87447139	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007589)	promoter-TSS (NM_007589)	-104.0	NM_007589	12314.0	Mm.329243	NM_007589	ENSMUSG00000036438	Calm2	1500001E21Rik|AL024017|Cam2|CamC	calmodulin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-52991618-2	chr2	52991518	52991718	+	781.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	133750.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-46830148-4	chr17	46830033	46830233	+	905.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001100452, intron 1 of 10)	intron (NM_001100452, intron 1 of 10)	1280.0	NM_001100452	210982.0	Mm.37642	NM_001100452	ENSMUSG00000036568	Bicral	Gltscr1l|mKIAA0240	BRD4 interacting chromatin remodeling complex associated protein like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-5105596-2	chr11	5105528	5105728	+	606.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_152138)	TTS (NR_152138)	5463.0	NM_001290493	279766.0	Mm.260866	NM_177370	ENSMUSG00000034175	Rhbdd3	Ptag	rhomboid domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-57746112-4	chr14	57745979	57746179	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015771)	promoter-TSS (NM_015771)	44.0	NM_015771	50523.0	Mm.347899	NM_015771	ENSMUSG00000021959	Lats2	4932411G09Rik|AV277261|AW228608	large tumor suppressor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-39732846-5	chr10	39732750	39732950	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_038037)	promoter-TSS (NR_038037)	690.0	NM_011264	19714.0	Mm.439723	NM_011264	ENSMUSG00000019841	Rev3l	Rev|Rev3|Sez4	REV3 like, DNA directed polymerase zeta catalytic subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-33303223-1	chr4	33303123	33303323	+	663.5	f0_balb.idr	Intergenic	RMER1B|Other|Other	-7088.0	NM_011884	24018.0	Mm.240024	NM_011884	ENSMUSG00000028274	Rngtt	AU020997|HCE|MCE1	RNA guanylyltransferase and 5'-phosphatase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-26835845-4	chr8	26835749	26835949	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11426.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75459769-2	chr11	75459669	75459869	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1770.0	NR_030711	100042498.0	Mm.482242	NR_030711	ENSMUSG00000085148	Mir22hg	2210403K04Rik|mir-22	Mir22 host gene (non-protein coding)	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-22119003-2	chr9	22118903	22119103	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-1808.0	NM_001357312	66126.0	Mm.29801	NM_170777	ENSMUSG00000013822	Elof1	1110011K10Rik	ELF1 homolog, elongation factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-164683586-2	chr2	164683486	164683686	+	634.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR33|LTR|ERVK	-1521.0	NM_001012704	408190.0	Mm.376205	NM_001012704	ENSMUSG00000067704	Wfdc13	Wfdc13l1	WAP four-disulfide core domain 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-80363739-2	chr18	80363639	80363839	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001190373, intron 1 of 3)	CpG	515.0	NM_001190373	240444.0	Mm.279568	NM_001190373	ENSMUSG00000059852	Kcng2	AA591524	potassium voltage-gated channel, subfamily G, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-105426098-2	chr4	105425996	105426196	+	568.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	268749.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-22348729-4	chr16	22348622	22348822	+	969.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53734.0	NR_153764	100043507.0		NR_153764		Gng5-ps	Gm15776	G protein subunit gamma 5, pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-133541505-2	chr3	133541405	133541605	+	730.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001040400, intron 1 of 10)	B1_Mm|SINE|Alu	2885.0	NM_001040400	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-9666087-4	chr3	9665977	9666177	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55992.0	NM_133218	170753.0	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-106955867-2	chr2	106955767	106955967	+	730.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14524.0	NM_173750	212772.0	Mm.381231	NM_173750	ENSMUSG00000027122	Arl14ep	2700007P21Rik|4930448O08Rik|ARF7EP	ADP-ribosylation factor-like 14 effector protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-37693645-3	chr3	37693519	37693719	+	766.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30741.0	NM_198657	381438.0	Mm.490549	NM_198657	ENSMUSG00000058174	Gm5148	EG381438	predicted gene 5148	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-103117310-7	chr11	103117185	103117385	+	977.710876	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_138753, exon 1 of 1)	exon (NM_138753, exon 1 of 1)	960.0	NM_138753	192231.0	Mm.8763	NM_138753	ENSMUSG00000048878	Hexim1	7330426E13Rik|CLP-1|Clp1|HIS1	hexamethylene bis-acetamide inducible 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126832111-1	chr7	126832011	126832211	+	612.0	f0_balb.idr	promoter-TSS (NM_183131)	promoter-TSS (NM_183131)	-615.0	NM_183131	78118.0	Mm.107753	NM_183131	ENSMUSG00000045989	4930451I11Rik	-	RIKEN cDNA 4930451I11 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152586754-2	chr1	152586654	152586854	+	660.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346119, intron 2 of 17)	intron (NM_001346119, intron 2 of 17)	38463.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21035678-2	chr9	21035578	21035778	+	753.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008319, intron 6 of 10)	intron (NM_008319, intron 6 of 10)	-3350.0	NR_035438	100316681.0		NR_035438	ENSMUSG00000084663	Mir1900	Mirn1900|mmu-mir-1900	microRNA 1900	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-42574354-4	chr13	42574257	42574457	+	972.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-106442.0	NM_001302635	218194.0	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-37729342-4	chr3	37729263	37729463	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5003.0	NM_198657	381438.0	Mm.490549	NM_198657	ENSMUSG00000058174	Gm5148	EG381438	predicted gene 5148	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167744129-4	chr2	167744023	167744223	+	990.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52946.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-61225167-2	chr19	61225078	61225278	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_009970, exon 11 of 12)	exon (NM_009970, exon 11 of 12)	3240.0	NM_009970	12982.0	Mm.287228	NM_009970	ENSMUSG00000059326	Csf2ra	CD116|Csfgmra|GM-CSF-Ra|GM-CSFR	colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)	protein-coding	1.15902366607006	0.37701725681372	0.36736914420844	0.35983783353445	1.25018007920318	0.379175153269153	1.1362736535939	0.361159232521301	1.0686549750671	0.579271720451802	1
Merged-chr1-37505391-1	chr1	37505291	37505491	+	580.0	f0_balb.idr	intron (NM_173870, intron 2 of 15)	intron (NM_173870, intron 2 of 15)	-16786.0	NR_024017	77633.0	Mm.483177	NR_024017	ENSMUSG00000103948	4930594C11Rik	-	G1 to S phase transition pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-63914518-4	chr11	63914418	63914618	+	938.008301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018805, intron 1 of 1)	intron (NM_018805, intron 1 of 1)	7766.0	NM_018805	54710.0	Mm.274426	NM_018805	ENSMUSG00000070407	Hs3st3b1	3-OST-3B|3OST3B1|3Ost3b|AU041882|AW536289|Hs3st3b|m3-OST-3B	heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	protein-coding	1.96048242508406	2.11791030037234	1.28486634637149	1.4424957118699	2.22009737135426	2.34149536399473	1.04700436766991	1.02608995415912	0.198477513216471	0.868262944099326	0.998431161219273
Merged-chr17-42832468-2	chr17	42832382	42832582	+	980.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_009847, intron 5 of 17)	intron (NM_009847, intron 5 of 17)	43942.0	NM_009847	12488.0	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding	3.22697443914728	2.29544051236234	1.6213224384226	2.28660932842507	1.50271238654907	3.40260917454369	2.92226953609511	1.80552440002712	0.272865162988638	0.767022558174996	0.998431161219273
Merged-chr2-24973454-2	chr2	24973354	24973554	+	554.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001031808, exon 2 of 2)	3' UTR (NM_001031808, exon 2 of 2)	1644.0	NM_001031808	107733.0	Mm.23010	NM_001031808	ENSMUSG00000036850	Mrpl41	MRP-L27|Rpml27	mitochondrial ribosomal protein L41	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-140957021-2	chr7	140956921	140957121	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4|LINE|L1	-1060.0	NM_030694	80876.0	Mm.379266	NM_030694	ENSMUSG00000060591	Ifitm2	DSPA2c|Ifitm3l|fragilis3|mil-3	interferon induced transmembrane protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-148160617-1	chr4	148160517	148160717	+	1000.0	f0_c57.idr	promoter-TSS (NM_176848)	promoter-TSS (NM_176848)	-51.0	NM_176848	230904.0	Mm.262287	NM_176848	ENSMUSG00000041556	Fbxo2	FBG1|FBX2|Fbs1|Fbs2|NFB42|Prpl4	F-box protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10742762-2	chr19	10742662	10742862	+	633.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_027805, intron 1 of 3)	intron (NR_027805, intron 1 of 3)	1815.0	NR_027805	403202.0	Mm.34482	NM_207529	ENSMUSG00000067577	A430093F15Rik	Gm674	RIKEN cDNA A430093F15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-44311130-2	chr19	44311030	44311230	+	883.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C|LTR|ERVK	7959.0	NR_039574	100628619.0		NR_039574	ENSMUSG00000093315	Mir5114	mmu-mir-5114|mu-mir-5114	microRNA 5114	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16002394-4	chr7	16002315	16002515	+	984.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M3|LINE|L1	-2920.0	NM_001081418	243842.0	Mm.440249	NM_001081418	ENSMUSG00000070808	Bicra	Gltscr1	BRD4 interacting chromatin remodeling complex associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-66515861-2	chr9	66515761	66515961	+	692.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001302116, exon 14 of 14)	3' UTR (NM_001302116, exon 14 of 14)	-1268.0	NM_175206	74165.0	Mm.297998	NM_175206	ENSMUSG00000050503	Fbxl22	1110004B15Rik	F-box and leucine-rich repeat protein 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-121626511-4	chr10	121626395	121626595	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081056)	promoter-TSS (NM_001081056)	-163.0	NM_001359618	73192.0	Mm.25042	NM_001081056	ENSMUSG00000034667	Xpot	1110004L07Rik|3110065H13Rik|AI452076|C79645|EXPORTIN-T	exportin, tRNA (nuclear export receptor for tRNAs)	protein-coding	7.17075660380556	7.11395422681232	6.96219905876826	7.13599909679461	7.28813419415893	7.50970916669679	7.09838407842519	6.93091866159236	0.127205673876574	0.45695598793326	0.919371384099387
Merged-chr2-28538356-2	chr2	28538256	28538456	+	757.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145836, intron 1 of 17)	intron (NM_001145836, intron 1 of 17)	4892.0	NM_001145836	19730.0	Mm.5236	NM_009058	ENSMUSG00000026821	Ralgds	Gnds|Rgds|mKIAA1308	ral guanine nucleotide dissociation stimulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-88523741-2	chr6	88523641	88523841	+	575.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4941.0	NM_016906	53421.0	Mm.28375	NM_016906	ENSMUSG00000030082	Sec61a1	AA408394|AA410007|Sec61a	Sec61 alpha 1 subunit (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-25053002-4	chr8	25052891	25053091	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031257, intron 9 of 11)	L1_Rod|LINE|L1	-14029.0	NM_001081187	330723.0	Mm.334452	NM_001081187	ENSMUSG00000037406	Htra4	B430206E18Rik	HtrA serine peptidase 4	protein-coding	5.517690623453	4.33375493747564	4.86491425478059	5.37029332131166	6.18629922918014	5.55064873081497	6.6582853208307	5.67453282020858	1.1062289292799	0.000849276355040759	0.0169075515062705
Merged-chr18-10885953-4	chr18	10885859	10886059	+	772.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-100407.0	NR_029781	723959.0		NR_029781	ENSMUSG00000106348	Mir1a-2	Mir1-2|Mirn1-2|mir-1a-2|mmu-mir-1-2|mmu-mir-1a-2	microRNA 1a-2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-85137555-5	chr6	85137458	85137658	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011467, exon 1 of 3)	exon (NM_011467, exon 1 of 3)	206.0	NM_011467	20751.0	Mm.28393	NM_011467	ENSMUSG00000033735	Spr	AA409688|Gm10328	sepiapterin reductase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-44050381-4	chr5	44050266	44050466	+	994.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163578, intron 3 of 22)	intron (NM_001163578, intron 3 of 22)	44402.0	NM_001163581	19126.0	Mm.6250	NM_008935	ENSMUSG00000029086	Prom1	4932416E19Rik|AC133|CD133|Prom|Prom-1|Proml1	prominin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81190879-2	chr10	81190779	81190979	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001190473, intron 5 of 8)	intron (NM_001190473, intron 5 of 8)	-3812.0	NR_015477	69678.0	Mm.81562	NR_015477		Atcayos	2310050B05Rik	ataxia, cerebellar, Cayman type, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96001219-4	chr3	96001115	96001315	+	980.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013841, intron 14 of 14)	intron (NM_013841, intron 14 of 14)	-5376.0	NM_023320	67220.0	Mm.458147	NM_023320	ENSMUSG00000015745	Plekho1	2810052M02Rik|CKIP-1|Ckip1|JZA-20|Jza2	pleckstrin homology domain containing, family O member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-143634845-3	chr5	143634745	143634945	+	922.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011182, intron 1 of 12)	intron (NM_011182, intron 1 of 12)	12398.0	NM_011182	19159.0	Mm.281003	NM_011182	ENSMUSG00000018001	Cyth3	AI648983|ARNO3|CLM3|Grp1|Pscd3	cytohesin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27765101-4	chr2	27765019	27765219	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54536.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-108008173-2	chr9	108008073	108008273	+	614.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013785, intron 1 of 5)	intron (NM_013785, intron 1 of 5)	5525.0	NM_013785	27399.0	Mm.276155	NM_013785	ENSMUSG00000032594	Ip6k1	1200016D08Rik|AU022776|Ihpk1|InsP6|InsP6k1|Itpk6	inositol hexaphosphate kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-53761322-2	chr11	53761222	53761422	+	869.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	2332.0	NR_106131	102465772.0		NR_106131	ENSMUSG00000099153	Mir7671	Gm27802|mmu-mir-7671	microRNA 7671	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-76768759-4	chr16	76768655	76768855	+	967.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155453, intron 1 of 3)	intron (NR_155453, intron 1 of 3)	10337.0	NR_155453	102632814.0		NR_155453	ENSMUSG00000109333	Gm30790	Gm45028	predicted gene, 30790	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-38742940-2	chr16	38742840	38743040	+	836.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285793, intron 1 of 6)	intron (NM_001285793, intron 1 of 6)	681.0	NM_001285793	56375.0	Mm.182377	NM_019804	ENSMUSG00000022793	B4galt4	9130402O08Rik|B4galt-IV|b4Gal-T4|beta4Gal-T4|beta4GalT-IV	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26242931-5	chr17	26242851	26243051	+	853.900024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001206335, intron 1 of 12)	intron (NM_001206335, intron 1 of 12)	1291.0	NM_207217	106581.0	Mm.28844	NM_207217	ENSMUSG00000024187	Fam234a	Itfg3	family with sequence similarity 234, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-112990927-4	chr10	112990820	112991020	+	990.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61894.0	NM_001033474	382423.0	Mm.431239	NM_001033474	ENSMUSG00000074748	Atxn7l3b	4921506J03Rik|6230409E21Rik|AI315132	ataxin 7-like 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45591001-2	chr7	45590901	45591101	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15825.0	NR_038165	71661.0	Mm.439894	NR_038165	ENSMUSG00000109644	0610005C13Rik	AI182092	RIKEN cDNA 0610005C13 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-56134972-4	chr13	56134867	56135067	+	906.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159513, intron 1 of 8)	CpG	583.0	NM_012015	26914.0	Mm.283802	NM_012015	ENSMUSG00000015937	H2afy	H2AF12M|mH2a1|macroH2A1	H2A histone family, member Y	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-79981132-3	chr18	79981031	79981231	+	990.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65764.0	NM_053117	93737.0	Mm.24678	NM_053117	ENSMUSG00000056214	Pard6g	2410049N21Rik|Par6a	par-6 family cell polarity regulator gamma	protein-coding	3.52991144341764	3.79553033945615	3.95782778954945	3.64480800862849	3.75137104910155	4.4066070898947	3.92098705321808	3.66331399511763	0.319355504291801	0.50013381699542	0.938059363548374
Merged-chr10-24667795-2	chr10	24667695	24667895	+	809.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001308329, intron 9 of 24)	L1_Mus3|LINE|L1	44364.0	NM_001308327	18605.0	Mm.27254	NM_008813	ENSMUSG00000037370	Enpp1	4833416E15Rik|AI428932|C76301|CD203c|E-NPP 1|E-NPP1|Ly-41|M6S1|NPP1|Npps|PC-1|Pca|Pca-1|Pdnp1|ttw|twy	ectonucleotide pyrophosphatase/phosphodiesterase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46057172-4	chr19	46057049	46057249	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346801, intron 1 of 13)	CpG	610.0	NM_001081214	226169.0	Mm.2415	NM_145504	ENSMUSG00000055491	Pprc1	A930018M19|BC013720|PRC|mKIAA0595	peroxisome proliferative activated receptor, gamma, coactivator-related 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191117382-1	chr1	191117282	191117482	+	652.0	f1_c57bl6.idr	Intergenic	Intergenic	18968.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	-0.948023810556697	-0.931328820230236	-0.941483360464557	-0.943939722492461	-0.792167248103246	-0.928545634159077	-0.227406778159396	-0.943510391816416	3.1012295273374	0.301013727230549	1
Merged-chr8-61921883-2	chr8	61921783	61921983	+	750.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6204.0	NM_001293783	234311.0	Mm.275233	NM_144928	ENSMUSG00000037921	Ddx60	9830118M07	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60	protein-coding	-1.84456824087626	-1.81369603968745	-1.82303204814395	-1.83070092346192	-1.84240106943552	-1.51787681909439	-1.82091858046888	-1.82932819844659	1.64481029852639	0.639921510788462	1
Merged-chr1-180298928-2	chr1	180298828	180299028	+	640.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31548.0	NM_001081175	320404.0	Mm.132535	NM_001081175	ENSMUSG00000038855	Itpkb	1110033J02Rik|E130307H12Rik	inositol 1,4,5-trisphosphate 3-kinase B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-106171649-2	chr9	106171541	106171741	+	823.5	f0_balb.idr|f1_balb.idr	intron (NM_029896, intron 1 of 8)	intron (NM_029896, intron 1 of 8)	712.0	NM_029896	77305.0	Mm.265125	NM_029896	ENSMUSG00000020257	Wdr82	9430077D24Rik|CDW5/WDR82	WD repeat domain containing 82	protein-coding	1.02461425022167	0.626149051429694	1.72158121348732	1.09164244948873	1.03477643407813	0.628709113835146	0.617234062244326	1.09853269035805	-1.41111743340111	0.357312323883468	0.853959579582101
Merged-chr8-95068074-2	chr8	95067974	95068174	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001042715, exon 8 of 18)	exon (NM_001042715, exon 8 of 18)	12971.0	NM_001042715	330830.0	Mm.277112	NM_001042715	ENSMUSG00000031786	Drc7	Ccdc135|Gm770|SRG-L|SRG-S	dynein regulatory complex subunit 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-53184904-3	chr11	53184812	53185012	+	945.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177059, intron 15 of 15)	intron (NM_177059, intron 15 of 15)	-64856.0	NR_046047	790909.0	Mm.404626	NR_046047	ENSMUSG00000087668	Gm11186	-	predicted gene 11186	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-98401540-3	chr14	98401438	98401638	+	735.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-231773.0	NM_007826	13134.0	Mm.320593	NM_007826	ENSMUSG00000055639	Dach1	Dac|Dach	dachshund family transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53037158-2	chr4	53037058	53037258	+	618.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 46 of 49)	B2_Mm2|SINE|B2	25278.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-84240356-4	chr1	84240249	84240449	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003948, intron 1 of 2)	intron (NM_001003948, intron 1 of 2)	-21388.0	NR_105771	102465181.0		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21774930-2	chr9	21774830	21775030	+	552.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145611, intron 7 of 11)	PB1D10|SINE|Alu	-14627.0	NM_001357331	67629.0	Mm.295642	NM_026282	ENSMUSG00000074476	Spc24	2410030K01Rik|AV109292|Spbc24	SPC24, NDC80 kinetochore complex component, homolog (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-100853300-2	chr13	100853200	100853400	+	562.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-19873.0	NM_022885	69048.0	Mm.402215	NM_022885	ENSMUSG00000021629	Slc30a5	1810010K08Rik|AF233321|ZNT5|ZTL1|ZnT-5|Zntl1	solute carrier family 30 (zinc transporter), member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-152743400-1	chr2	152743300	152743500	+	654.0	f1_balb.idr	Intergenic	(CAGAGA)n|Simple_repeat|Simple_repeat	7149.0	NM_001355113	15901.0	Mm.444	NM_010495	ENSMUSG00000042745	Id1	AI323524|D2Wsu140e|Idb1|bHLHb24	inhibitor of DNA binding 1	protein-coding	0.558712567840291	0.209387052889763	0.203402290635502	0.198786328803637	0.664177342086803	0.563594493528839	0.204722063453549	0.82354849628289	2.05900025766166	0.303541867977508	1
Merged-chr9-118877209-1	chr9	118877109	118877309	+	587.0	f1_c57bl6.idr	exon (NM_133721, exon 26 of 28)	exon (NM_133721, exon 26 of 28)	-49327.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	0.419242963293161	0.137207120757855	0.12922830248435	1.16717829682521	0.114132065974739	0.138993862525753	0.130995569620947	0.838503147847931	-1.06100230076219	0.609432336000736	1
Merged-chr6-47889026-4	chr6	47888931	47889131	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146175, intron 2 of 7)	intron (NM_146175, intron 2 of 7)	11476.0	NM_146175	101095.0	Mm.440186	NM_146175	ENSMUSG00000025821	Zfp282	AI449432|C81429|E430019K09Rik|HUB1	zinc finger protein 282	protein-coding	3.20763518923594	3.50711257855726	4.11888799292966	3.6746177492481	2.85784443014423	3.43604543701995	3.66323140182883	3.47873625805787	-0.431556149358606	0.430394133640307	0.904223090525788
Merged-chr12-72762340-2	chr12	72762260	72762460	+	614.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008910, intron 1 of 5)	intron (NM_008910, intron 1 of 5)	1149.0	NM_008910	19042.0	Mm.261045	NM_008910	ENSMUSG00000021096	Ppm1a	2310003C21Rik|2900017D14Rik|AI427932|AU017636|MMPa-2|MPPa-1	protein phosphatase 1A, magnesium dependent, alpha isoform	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-85803800-2	chr16	85803700	85803900	+	772.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009621)	promoter-TSS (NM_009621)	-687.0	NM_009621	11504.0	Mm.1421	NM_009621	ENSMUSG00000022893	Adamts1	ADAM-TS1|ADAMTS|ADAMTS-1|C3-C5|METH-1|METH1	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134245855-4	chr6	134245734	134245934	+	902.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 5 of 8)	L1MEf|LINE|L1	-150495.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	4.29676841528831	4.72080481740972	2.94007673151088	4.50516047231623	3.90696314627336	3.94950780733663	3.35282184808569	4.25669593854195	-0.48424637319539	0.338846946580282	0.83928275496908
Merged-chr7-81324741-2	chr7	81324641	81324841	+	670.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008803, intron 18 of 21)	intron (NM_008803, intron 18 of 21)	20493.0	NM_009092	20068.0	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-173534721-4	chr2	173534573	173534773	+	954.255981	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12081.0	NM_028158	72221.0	Mm.46132	NM_028158	ENSMUSG00000027518	1700021F07Rik	-	RIKEN cDNA 1700021F07 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-95825079-2	chr15	95824979	95825179	+	648.916626	f1_balb.idr|f1_c57bl6.idr	intron (NR_155276, intron 1 of 1)	intron (NR_155276, intron 1 of 1)	4993.0	NR_155277	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-17946295-4	chr2	17946183	17946383	+	978.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50675.0	NM_026627	68231.0	Mm.23887	NM_026627	ENSMUSG00000062651	H2al2a	1700113O17Rik|H2A.Bbd|H2A.L.2|H2afb1|H2al2|TSEG-1|Tseg1	H2A histone family member L2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-143152785-2	chr6	143152685	143152885	+	718.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_153819, exon 2 of 9)	non-coding (NR_153819, exon 2 of 9)	1146.0	NR_153819	102633311.0	Mm.333484	NR_153819		Gm31108	Gm31169	predicted gene, 31108	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-121389122-4	chr5	121389013	121389213	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3498.0	NM_172275	231712.0	Mm.20488	NM_172275	ENSMUSG00000042726	Trafd1	1110008K06Rik|Fln29	TRAF type zinc finger domain containing 1	protein-coding	4.78290782057813	4.27514356231701	4.06414070812588	5.09647030950499	4.72047523020553	4.3058741799546	4.09597448185443	5.11862933034962	0.00189503615608133	0.996315158117608	0.999035207301236
Merged-chr11-118452705-2	chr11	118452605	118452805	+	659.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001204129)	TTS (NM_001204129)	2290.0	NR_045902	100126224.0	Mm.441989	NR_045902	ENSMUSG00000086514	Gm11747	-	predicted gene 11747	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85669277-2	chr12	85669177	85669377	+	858.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17443.0	NM_016767	53314.0	Mm.6672	NM_016767	ENSMUSG00000034266	Batf	B-ATF|SFA-2	basic leucine zipper transcription factor, ATF-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-110022346-1	chr4	110022246	110022446	+	574.333313	f1_c57bl6.idr	Intergenic	Intergenic	44321.0	NM_172296	242620.0	Mm.32825	NM_172296	ENSMUSG00000047143	Dmrta2	Dmrt5	doublesex and mab-3 related transcription factor like family A2	protein-coding	2.11373790908268	1.66363720565345	2.01965166771402	0.873285677557865	1.21198675198915	1.15877483659123	1.12399937788518	1.0934833703348	-2.2026385976309	0.0795027226005513	0.429028635274999
Merged-chr2-132903708-1	chr2	132903608	132903808	+	692.0	f0_balb.idr	TTS (NM_198029)	TTS (NM_198029)	-22846.0	NM_177303	320974.0	Mm.357342	NM_177303	ENSMUSG00000043110	Lrrn4	B430119L13Rik|Nlrr4	leucine rich repeat neuronal 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-31663970-7	chr16	31663886	31664086	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252434)	promoter-TSS (NM_001252434)	51.0	NM_001252434	13383.0	Mm.382	NM_007862	ENSMUSG00000022770	Dlg1	B130052P05Rik|Dlgh1|E-dlg/SAP97|SAP-97|SAP97|mKIAA4187	discs large MAGUK scaffold protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-144932947-3	chr7	144932861	144933061	+	833.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007631, intron 4 of 4)	intron (NM_007631, intron 4 of 4)	6964.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	0.336129527123387	-0.00829022931360821	0.156315587405677	0.673910678915721	0.117424806802861	-0.00718427853371853	-0.0121092095233507	0.14307081033628	-2.22772936934652	0.279206098444028	1
Merged-chr1-87650184-2	chr1	87650084	87650284	+	616.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110192, intron 2 of 26)	RMER15|LTR|ERVL	29872.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-8756619-2	chr3	8756519	8756719	+	956.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-89581.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-113747367-4	chr11	113747277	113747477	+	974.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163346, intron 1 of 1)	intron (NM_001163346, intron 1 of 1)	3783.0	NM_020006	56699.0	Mm.293378	NM_020006	ENSMUSG00000041598	Cdc42ep4	1500041M20Rik|Borg4|CEP4	CDC42 effector protein (Rho GTPase binding) 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-64009528-2	chr10	64009428	64009628	+	584.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178678, intron 2 of 2)	intron (NM_178678, intron 2 of 2)	80727.0	NM_178678	216028.0	Mm.431318	NM_178678	ENSMUSG00000042846	Lrrtm3	9630044H04Rik	leucine rich repeat transmembrane neuronal 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-65418454-2	chr10	65418354	65418554	+	691.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-298087.0	NR_152621	102632700.0		NR_152621	ENSMUSG00000100528	Gm28881	-	predicted gene 28881	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-84956533-4	chr2	84956452	84956652	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021398, intron 12 of 12)	intron (NM_021398, intron 12 of 12)	19906.0	NM_021398	58207.0	Mm.290729	NM_021398	ENSMUSG00000027074	Slc43a3	Eeg1|SEEEG-1	solute carrier family 43, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-112941192-2	chr12	112941092	112941292	+	758.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001316724, intron 1 of 4)	intron (NM_001316724, intron 1 of 4)	950.0	NM_025399	66174.0	Mm.7070	NM_025399	ENSMUSG00000002804	Nudt14	1110030M18Rik|UGPPase	nudix (nucleoside diphosphate linked moiety X)-type motif 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-8678021-4	chr18	8677918	8678118	+	927.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-534838.0	NM_008058	14370.0	Mm.184289	NM_008058	ENSMUSG00000036904	Fzd8	Fz8	frizzled class receptor 8	protein-coding	3.44277229135231	4.40900081743867	4.00245517898403	3.62777116673564	3.95109712335596	3.71941301943485	3.41070500033006	3.64618358466534	-0.308733079630454	0.53257911283764	0.952082138848632
Merged-chr3-96227582-4	chr3	96227481	96227681	+	975.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR18D_MM|LTR|ERVK	6509.0	NM_178214	319190.0	Mm.439791	NM_178214	ENSMUSG00000068854	Hist2h2be	AV127319|H2b-613|T25626	histone cluster 2, H2be	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-100249349-1	chr12	100249249	100249449	+	541.0	f1_balb.idr	Intergenic	Intergenic	-27260.0	NR_045741	100038713.0	Mm.470751	NR_045741	ENSMUSG00000113679	Gm10432	-	predicted gene 10432	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-51923079-2	chr11	51922979	51923179	+	633.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44552.0	NM_029976	52626.0	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-12321438-4	chr15	12321328	12321528	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025673)	promoter-TSS (NM_025673)	-68.0	NM_025673	66629.0	Mm.157655	NM_025673	ENSMUSG00000022200	Golph3	4733401N08Rik|5730410D03Rik|AW413496	golgi phosphoprotein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-100495271-2	chr10	100495171	100495371	+	695.31665	f1_balb.idr|f1_c57bl6.idr	intron (NM_146009, intron 6 of 52)	intron (NM_146009, intron 6 of 52)	6982.0	NM_146009	216274.0	Mm.229114	NM_146009	ENSMUSG00000019971	Cep290	BC004690|Nphp6|b2b1454Clo|b2b1752Clo	centrosomal protein 290	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-155019908-2	chr2	155019808	155020008	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_015770, intron 1 of 3)	ERVB4_1-I_MM-int|LTR|ERVK	6338.0	NM_015770	50518.0	Mm.315593	NM_015770	ENSMUSG00000027596	a	A<y>|ASIP|ASP|As	nonagouti	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3234302-2	chr12	3234202	3234402	+	736.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1489.0	NR_015551	74173.0	Mm.309774	NM_028796	ENSMUSG00000079179	Rab10os	1700012B15Rik|1810036A22Rik	RAB10, member RAS oncogene family, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-75643269-1	chr15	75643169	75643369	+	542.0	f1_c57bl6.idr	Intergenic	Intergenic	26585.0	NM_011759	22701.0	Mm.87210	NM_011759	ENSMUSG00000047003	Zfp41	CTfin92|Zfp-41	zinc finger protein 41	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16207700-4	chr7	16207614	16207814	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027883, intron 7 of 16)	intron (NM_027883, intron 7 of 16)	14279.0	NM_001285931	71723.0	Mm.75259	NM_027883	ENSMUSG00000006019	Dhx34	1200013B07Rik|1810012L18Rik|Ddx34|mKIAA0134	DEAH (Asp-Glu-Ala-His) box polypeptide 34	protein-coding	6.11591514197495	6.04750447362051	5.98508805843531	6.30660379031681	4.26295267278235	4.40330587499465	3.93877191741298	4.97295396992837	-1.92063327472067	1.85109101498699e-10	3.62109619529574e-08
Merged-chr2-102989972-3	chr2	102989842	102990042	+	885.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	83571.0	NM_175094	27402.0	Mm.315011	NM_175094	ENSMUSG00000010914	Pdhx	AI481367|E3bp|Pdx1	pyruvate dehydrogenase complex, component X	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-24699575-2	chr13	24699475	24699675	+	746.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080381, intron 13 of 14)	(CAGA)n|Simple_repeat|Simple_repeat	60927.0	NM_029679	193385.0	Mm.217319	NM_029679	ENSMUSG00000036006	Ripor2	Fam65b	RHO family interacting cell polarization regulator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-54730094-2	chr11	54729993	54730193	+	678.25	f0_balb.idr|f0_c57.idr	intron (NM_178626, intron 3 of 5)	ID|SINE|ID	57610.0	NM_178626	72729.0	Mm.29476	NM_178626	ENSMUSG00000052298	Cdc42se2	2810404F18Rik|AA408783|AA536669|SPEC2	CDC42 small effector 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-77309415-4	chr5	77309144	77309344	+	868.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_019836, exon 1 of 7)	exon (NM_019836, exon 1 of 7)	842.0	NM_019836	56412.0	Mm.129136	NM_019836	ENSMUSG00000036285	Noa1	2610024G14Rik|AU022345|AtNOS1|mAtNOS1	nitric oxide associated 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-64447105-2	chr9	64447005	64447205	+	589.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001134399, intron 1 of 24)	intron (NM_001134399, intron 1 of 24)	61479.0	NM_001134399	214058.0	Mm.127721	NM_172522	ENSMUSG00000036466	Megf11	2410080H04Rik|D130061K05	multiple EGF-like-domains 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-58117841-4	chr13	58117749	58117949	+	903.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4202.0	NM_001362415	100503085.0	Mm.379256	NM_001195075	ENSMUSG00000014164	Klhl3	7530408C15Rik|AI430941|EG627648	kelch-like 3	protein-coding	0.179845666052366	0.837964476577113	0.379858619809778	0.188794990548784	0.938905607581253	0.578445827382812	0.195687971290822	0.189733401493193	0.540006158174113	0.784590981105709	1
Merged-chr16-36639984-4	chr16	36639900	36640100	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019388, intron 1 of 7)	intron (NM_019388, intron 1 of 7)	26077.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-122246206-2	chr3	122246103	122246303	+	980.166626	f0_balb.idr|f0_c57.idr	intron (NM_008129, intron 1 of 6)	CpG	646.0	NM_008129	14630.0	Mm.292676	NM_008129	ENSMUSG00000028124	Gclm	AI649393|Gcmc|Glclr	glutamate-cysteine ligase, modifier subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26252033-2	chr17	26251933	26252133	+	554.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025881)	promoter-TSS (NM_025881)	-877.0	NM_025881	66978.0	Mm.440216	NM_025881	ENSMUSG00000024188	Luc7l	1810045C04Rik|2410018D03Rik	Luc7-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129855318-7	chr4	129855211	129855411	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34603.0	NM_001164745	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	3.62011117009846	3.79074762645051	3.85200399131372	2.12027051479949	2.85898575781324	3.10531676769587	3.76059909419361	2.4975890091805	-0.571798822343871	0.392032103670844	0.881062209518629
Merged-chr10-127742089-3	chr10	127742004	127742204	+	954.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_198035, exon 2 of 2)	exon (NM_198035, exon 2 of 2)	2566.0	NM_198035	320080.0	Mm.27258	NM_198035	ENSMUSG00000044617	Zbtb39	7030401O21Rik|mKIAA0352	zinc finger and BTB domain containing 39	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-3254866-2	chr16	3254766	3254966	+	550.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-337532.0	NM_146860	258859.0	Mm.377723	NM_146860	ENSMUSG00000051003	Olfr161	MOR131-1|OR912-47M6	olfactory receptor 161	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-62395553-2	chr15	62395467	62395667	+	719.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-176116.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	1.05578882244999	1.26190735186397	0.732195708441861	0.369982395882404	0.780436324401327	0.387365083756753	0.378657169442897	0.371165658437336	-2.40190457830652	0.192454392097622	1
Merged-chr10-75883373-4	chr10	75883283	75883483	+	830.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10015.0	NR_152573	70377.0	Mm.275878	NM_024440	ENSMUSG00000009092	Derl3	1810006I20Rik|1810063P04Rik|IZP6|derlin-3	Der1-like domain family, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107724945-4	chr9	107724828	107725028	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14453.0	NM_011349	20350.0	Mm.12903	NM_011349	ENSMUSG00000034684	Sema3f	Sema4|Semak	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-87509327-4	chr3	87509233	87509433	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16245.0	NM_001083318	27049.0	Mm.219460	NM_012051	ENSMUSG00000003382	Etv3	AI414410|METS|Pe1	ets variant 3	protein-coding	2.90795837129542	2.6282157980259	1.56195716117285	3.20681026346526	2.93177067140522	2.64770249615466	2.80133805163657	3.22273502106154	0.375703698635954	0.622826676296986	0.980151424739145
Merged-chr1-36547921-2	chr1	36547821	36548021	+	628.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_132321)	promoter-TSS (NR_132321)	-669.0	NR_132321	109346.0	Mm.247537	NM_026241	ENSMUSG00000079610	Ankrd39	9130416N05Rik|C030004B10Rik	ankyrin repeat domain 39	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-93461009-4	chr2	93460894	93461094	+	994.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040532, intron 2 of 4)	intron (NR_040532, intron 2 of 4)	857.0	NM_001271461	12521.0	Mm.4261	NM_007656	ENSMUSG00000027215	Cd82	AA682076|AL023070|C33|IA4|Kai1|Tspan27	CD82 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-88458269-4	chr17	88458172	88458372	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355742, intron 1 of 5)	intron (NM_001355742, intron 1 of 5)	17568.0	NM_001355742	14236.0	Mm.112824	NM_180974	ENSMUSG00000034998	Foxn2	3230402J05Rik|6030465J18Rik|Fkh19|Foxn1|HTLF	forkhead box N2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-105295557-1	chr14	105295457	105295657	+	812.0	f1_balb.idr	intron (NM_029561, intron 4 of 7)	intron (NM_029561, intron 4 of 7)	36884.0	NM_001190989	76273.0	Mm.290669	NM_029561	ENSMUSG00000053253	Ndfip2	0710001O20Rik|2810436B12Rik|9130207N19Rik|N4wbp5a|mKIAA1165	Nedd4 family interacting protein 2	protein-coding	-0.459677444553275	-0.446895206558723	0.014040815358871	-0.454310707840495	0.281464868703392	-0.445952232332286	-0.450156868247634	-0.453746212004697	0.887766535221161	0.745446812450168	1
Merged-chr6-137824880-2	chr6	137824780	137824980	+	972.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172733, intron 6 of 8)	intron (NM_172733, intron 6 of 8)	70303.0	NM_172733	232449.0	Mm.29181	NM_172733	ENSMUSG00000030225	Dera	2010002D22Rik|2500002K03Rik|DEOC	deoxyribose-phosphate aldolase (putative)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-46153247-4	chr18	46153175	46153375	+	873.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45543.0	NM_001170855	28105.0	Mm.277382	NM_178872	ENSMUSG00000033949	Trim36	D18Wsu100e|haprin	tripartite motif-containing 36	protein-coding	2.70081499407183	2.03206702158067	1.50572364599832	2.20414300459787	1.399677634467	1.08275373959283	1.05719689562858	1.78043344577151	-2.393085084477	0.0350377628078102	0.265170150232195
Merged-chr14-25857239-4	chr14	25857046	25857246	+	770.3184809999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013469, intron 1 of 14)	intron (NM_013469, intron 1 of 14)	14991.0	NM_013469	11744.0	Mm.294083	NM_013469	ENSMUSG00000021866	Anxa11	A830099O17Rik|Anx11	annexin A11	protein-coding	0.204266585807421	0.533809681909405	0.802085890071838	0.210089315750403	0.632059671707958	0.219327566827842	0.214654650877913	0.482841002636248	-0.503973787197994	0.801474520067305	1
Merged-chr8-126947941-2	chr8	126947841	126948041	+	657.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172762, exon 11 of 11)	3' UTR (NM_172762, exon 11 of 11)	-2020.0	NM_024214	67952.0	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-8165300-2	chr17	8165200	8165400	+	556.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001197046)	promoter-TSS (NM_001197046)	-218.0	NM_001197046	75296.0	Mm.227250	NM_201230	ENSMUSG00000069135	Fgfr1op	4930553O10Rik|FOP	Fgfr1 oncogene partner	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30934162-4	chr2	30934055	30934255	+	930.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-18846.0	NM_133673	30934.0	Mm.249164	NM_133673	ENSMUSG00000026848	Tor1b	2610016F05Rik|DQ1|torsinB	torsin family 1, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98655272-2	chr11	98655172	98655372	+	791.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_029727, intron 8 of 10)	intron (NM_029727, intron 8 of 10)	8513.0	NM_029727	76758.0	Mm.159149	NM_029727	ENSMUSG00000017211	Gsdma2	2200001G21Rik|2210006M16Rik|2210009F20Rik|2210411P14Rik|Gsdm2|Gsdml2	gasdermin A2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-58553079-1	chr3	58552979	58553179	+	617.0	f1_c57bl6.idr	intron (NM_001005509, intron 11 of 13)	intron (NM_001005509, intron 11 of 13)	-23557.0	NM_001040396	69227.0	Mm.270950	NM_001040396	ENSMUSG00000075700	Selenot	2810407C02Rik|5730408P04Rik|Selt	selenoprotein T	protein-coding	-0.674173820023556	-0.61502592808553	-0.806989237858888	-0.809230588457245	-0.257330055294583	-0.801426611265557	-0.806347315613889	-0.808839498116355	1.12499697273379	0.692160173395209	1
Merged-chr15-102287692-2	chr15	102287592	102287792	+	735.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	8236.0	NM_134100	106073.0	Mm.287740	NM_134100	ENSMUSG00000045665	Mfsd5	AA409375|AW556797|D15Mgi27	major facilitator superfamily domain containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-33808708-4	chr14	33808613	33808813	+	846.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131113, intron 3 of 3)	MER121|DNA|TcMar?	2570.0	NR_131114	218902.0	Mm.107791	NR_131113	ENSMUSG00000115751	4930503F20Rik	4930453C15	RIKEN cDNA 4930503F20 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-21747583-4	chr19	21747479	21747679	+	910.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30761.0	NM_001033759	83921.0	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-36595266-2	chr5	36595166	36595366	+	702.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9040.0	NM_001113362	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-103744774-4	chr5	103744671	103744871	+	999.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9391.0	NM_133919	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-110783805-4	chr9	110783685	110783885	+	833.483337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14400.0	NM_153099	235628.0	Mm.292285	NM_153099	ENSMUSG00000044664	Prss42	Tessp2	protease, serine 42	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-165697723-4	chr1	165697638	165697838	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038846, intron 1 of 5)	intron (NM_001038846, intron 1 of 5)	10356.0	NM_001038846	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-38072357-1	chr5	38072257	38072457	+	684.0	f1_c57bl6.idr	intron (NM_001359398, intron 1 of 9)	intron (NM_001359398, intron 1 of 9)	33127.0	NM_026959	71116.0	Mm.18959	NM_026959	ENSMUSG00000029125	Stx18	1810035L21Rik|4933425D03Rik|AU041562	syntaxin 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141281549-4	chr4	141281397	141281597	+	917.1770630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3058.0	NR_151527	100503810.0		NR_151527	ENSMUSG00000085395	Gm13056	-	predicted gene 13056	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-136672798-2	chr1	136672698	136672898	+	652.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10598.0	NR_045324	100503460.0	Mm.30630	NR_045324	ENSMUSG00000097113	Gm19705	-	predicted gene, 19705	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-142031975-2	chr4	142031875	142032075	+	859.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_145402, exon 3 of 3)	exon (NM_145402, exon 3 of 3)	14077.0	NR_131014	78917.0	Mm.139995	NR_131014	ENSMUSG00000085761	4930455G09Rik	-	RIKEN cDNA 4930455G09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-21280667-4	chr14	21280569	21280769	+	997.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134079, intron 6 of 10)	intron (NM_134079, intron 6 of 10)	204517.0	NM_001243041	11534.0	Mm.188734	NM_134079	ENSMUSG00000039197	Adk	2310026J05Rik|5033405D03Rik|AI255373|AI987814|Ak	adenosine kinase	protein-coding	2.95004296235763	2.67782866464012	2.73325649226069	2.49861827929518	3.44239731996058	3.70265844952606	3.72421643940344	4.37205192773317	1.8148310265052	0.00195805022507645	0.0327804929308845
Merged-chr6-38943220-3	chr6	38943111	38943311	+	892.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 1 of 12)	ORR1D2|LTR|ERVL-MaLR	24225.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-45955946-4	chr13	45955860	45956060	+	879.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199304, intron 2 of 6)	intron (NM_001199304, intron 2 of 6)	9031.0	NM_001199304	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165055621-4	chr2	165055526	165055726	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_170704)	promoter-TSS (NM_170704)	-10.0	NM_170704	21939.0	Mm.271833	NM_011611	ENSMUSG00000017652	Cd40	AI326936|Bp50|GP39|HIGM1|IGM|IMD3|T-BAM|TRAP|Tnfrsf5|p50	CD40 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115654232-4	chr11	115654143	115654343	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001313936, intron 3 of 5)	RSINE1|SINE|B4	-25948.0	NM_001252395	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-135628192-4	chr3	135628085	135628285	+	992.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008689, intron 6 of 24)	intron (NM_008689, intron 6 of 24)	63362.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21092069-4	chr9	21091965	21092165	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027911)	promoter-TSS (NM_027911)	-57.0	NR_038081	100568458.0	Mm.196137	NR_038081		Gm38431	Raver1-fdx1l	predicted gene, 38431	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-110713152-3	chr9	110713023	110713223	+	805.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR22_Mur|LTR|ERVK	29487.0	NM_001083936	19228.0	Mm.3542	NM_011199	ENSMUSG00000032492	Pth1r	PPR|Pthr|Pthr1	parathyroid hormone 1 receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153351529-3	chr2	153351429	153351629	+	938.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039939, intron 1 of 11)	intron (NM_001039939, intron 1 of 11)	5390.0	NM_001039939	228790.0	Mm.330677	NM_001039939	ENSMUSG00000042548	Asxl1	mKIAA0978	additional sex combs like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-105881483-2	chr1	105881383	105881583	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	100760.0	NM_009399	21934.0	Mm.6251	NM_009399	ENSMUSG00000026321	Tnfrsf11a	Ly109|ODFR|OFE|Rank|TRANCE-R|mRANK	tumor necrosis factor receptor superfamily, member 11a, NFKB activator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-140906285-4	chr4	140906207	140906407	+	914.616699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008812)	promoter-TSS (NM_008812)	-53.0	NM_008812	18600.0	Mm.2296	NM_008812	ENSMUSG00000028927	Padi2	Pdi|Pdi2|mKIAA0994	peptidyl arginine deiminase, type II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-29444322-2	chr6	29444222	29444422	+	747.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001311074, exon 13 of 47)	exon (NM_001311074, exon 13 of 47)	11066.0	NM_001311074	68794.0	Mm.39046	NM_026839	ENSMUSG00000068699	Flnc	1110055E19Rik|ABP-280|ABPL|Fln2	filamin C, gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-44919653-2	chr2	44919553	44919753	+	575.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58031.0	NM_172662	227835.0	Mm.314312	NM_172662	ENSMUSG00000036890	Gtdc1	E330008O22Rik	glycosyltransferase-like domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-62185806-4	chr18	62185724	62185924	+	789.075012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	5724.0	NM_001013754	225609.0	Mm.296917	NM_001013754	ENSMUSG00000054589	Gm9949	EG225609	predicted gene 9949	protein-coding	1.69017284831129	1.08249565682988	2.47847614874518	2.40318729616008	2.65702029601414	1.08834269947591	1.31897060138251	1.28076382725929	-0.582548950001463	0.624437320385406	0.980630817450287
Merged-chr14-122650217-2	chr14	122650117	122650317	+	991.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153443, intron 8 of 24)	intron (NR_153443, intron 8 of 24)	115889.0	NM_144844	110821.0	Mm.23876	NM_144844	ENSMUSG00000041650	Pcca	C79630	propionyl-Coenzyme A carboxylase, alpha polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-15921952-4	chr7	15921814	15922014	+	988.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009156, intron 1 of 5)	intron (NM_009156, intron 1 of 5)	457.0	NM_009156	20364.0	Mm.42829	NM_009156	ENSMUSG00000041571	Selenow	Sepw1|selW	selenoprotein W	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-63020841-4	chr11	63020749	63020949	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16715.0	NR_126547	74884.0	Mm.363520	NR_126547	ENSMUSG00000087604	Cdrt4os1	4930452L02Rik	CMT1A duplicated region transcript 4, opposite strand 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-21285577-1	chr12	21285477	21285677	+	604.0	f1_c57bl6.idr	promoter-TSS (NM_018813)	promoter-TSS (NM_018813)	707.0	NM_008403	16413.0	Mm.273333	NM_008403	ENSMUSG00000062352	Itgb1bp1	AI449260|AU019480|Icap1	integrin beta 1 binding protein 1	protein-coding	1.87038693993631	2.79257483045418	2.04030849179804	1.18360419353655	2.82688608725656	2.72542159506538	1.21949039224476	1.83592140411637	0.466679488676807	0.658202522900504	0.988704682801132
Merged-chr5-74961318-2	chr5	74961215	74961415	+	640.0	f0_balb.idr|f0_c57.idr	intron (NR_045866, intron 2 of 4)	intron (NR_045866, intron 2 of 4)	12121.0	NR_045866	619945.0	Mm.359372	NM_001037908	ENSMUSG00000072874	Gm6116	EG619945	predicted gene 6116	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-34356831-3	chr15	34356728	34356928	+	866.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001256161, intron 1 of 3)	hAT-N1_Mam|DNA|hAT?	1044.0	NM_001256161	77358.0	Mm.402759	NM_001256161	ENSMUSG00000094447	9430069I07Rik	-	RIKEN cDNA 9430069I07 gene	protein-coding	-0.355373600838984	-0.344998258995423	-0.0519552247407708	-0.351048528565421	-0.00826626111580206	-0.165015104342148	-0.0452399995465969	-0.350590976503329	1.4696904688482	0.541231024734889	1
Merged-chr9-21166260-4	chr9	21166161	21166361	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183408, intron 1 of 14)	CpG	547.0	NM_183408	18577.0	Mm.191749	NM_019798	ENSMUSG00000032177	Pde4a	D9Ertd60e|Dpde2	phosphodiesterase 4A, cAMP specific	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-78596976-3	chr9	78596868	78597068	+	686.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8923.0	NM_001276452	235504.0	Mm.46932	NM_172773	ENSMUSG00000049624	Slc17a5	4631416G20Rik|4732491M05|AST|ISSD|NSD|SD|SIALIN|SIASD|SLD	solute carrier family 17 (anion/sugar transporter), member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69760235-2	chr11	69760135	69760335	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_019871, exon 2 of 2)	exon (NM_019871, exon 2 of 2)	-1602.0	NM_001291068	20020.0	Mm.16533	NM_009089	ENSMUSG00000005198	Polr2a	220kDa|Rpb1|Rpo2-1	polymerase (RNA) II (DNA directed) polypeptide A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-50753821-4	chr16	50753698	50753898	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21025.0	NR_028300	68190.0	Mm.139089	NR_028300		Dubr	5330426P16Rik|Dum	Dppa2 upstream binding RNA	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-33965856-1	chr17	33965756	33965956	+	662.0	f1_balb.idr	intron (NM_001357329, intron 19 of 19)	intron (NM_001357329, intron 19 of 19)	9766.0	NM_001357329	224705.0	Mm.448614	NM_172620	ENSMUSG00000024319	Vps52	ARE1|D130068D18|D430041K17Rik|SAC2|Sacm2l|tclw5	VPS52 GARP complex subunit	protein-coding	1.32758228428028	0.771727523618291	0.755490916281429	1.41312033645073	0.917836184079093	0.775331420940908	1.89641814038818	1.90544747603691	1.34585173466324	0.347068408161547	0.847437850938575
Merged-chr1-164054972-2	chr1	164054872	164055072	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011345, intron 11 of 13)	intron (NM_011345, intron 11 of 13)	6738.0	NM_011345	20339.0	Mm.5245	NM_011345	ENSMUSG00000026582	Sele	CD62E|E-selectin|ELAM-1|Elam|LECAM2	selectin, endothelial cell	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-35022391-1	chr7	35022291	35022491	+	566.5	f1_c57bl6.idr	intron (NM_008820, intron 11 of 14)	intron (NM_008820, intron 11 of 14)	34175.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	-0.145847918227882	0.0804312636499027	0.763134331663556	-0.138275534750721	-0.144717917220697	-0.126576183897175	0.363460831011433	-0.137481869001801	-1.40812914240657	0.541653335035705	1
Merged-chr3-9705289-3	chr3	9705166	9705366	+	764.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053182, intron 3 of 7)	intron (NM_053182, intron 3 of 7)	-95181.0	NM_133218	170753.0	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35897406-4	chr17	35897315	35897515	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033630)	promoter-TSS (NM_001033630)	-37.0	NM_001033630	69662.0	Mm.260159	NM_001033630	ENSMUSG00000050705	2310061I04Rik	-	RIKEN cDNA 2310061I04 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-103170805-2	chr3	103170705	103170905	+	591.833374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026602)	promoter-TSS (NM_026602)	-850.0	NM_026602	68183.0	Mm.104919	NM_026602	ENSMUSG00000005687	Bcas2	6430539P16Rik|AI132645|C76366|C80030	breast carcinoma amplified sequence 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55649564-4	chr19	55649459	55649659	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045318, intron 2 of 3)	intron (NR_045318, intron 2 of 3)	52645.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-60895600-4	chr19	60895462	60895662	+	839.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018869, intron 1 of 15)	intron (NM_018869, intron 1 of 15)	5813.0	NM_018869	14773.0	Mm.279400	NM_018869	ENSMUSG00000003228	Grk5	Gprk5	G protein-coupled receptor kinase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-165702792-1	chr1	165702692	165702892	+	547.0	f1_c57bl6.idr	intron (NM_001038846, intron 1 of 5)	intron (NM_001038846, intron 1 of 5)	5302.0	NM_001038846	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106026908-2	chr11	106026808	106027008	+	704.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037712, intron 11 of 12)	intron (NM_001037712, intron 11 of 12)	-9964.0	NM_027946	71833.0	Mm.307455	NM_027946	ENSMUSG00000049354	Dcaf7	1700012F10Rik|2610037L01Rik|C86529|HAN11|Wdr68	DDB1 and CUL4 associated factor 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152774774-4	chr1	152774672	152774872	+	991.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_026369, exon 4 of 4)	3' UTR (NM_026369, exon 4 of 4)	8230.0	NM_026369	67771.0	Mm.288974	NM_026369	ENSMUSG00000008475	Arpc5	5830443F10Rik|p16-Arc	actin related protein 2/3 complex, subunit 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-79685040-2	chr10	79684940	79685140	+	720.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_177613, exon 3 of 5)	exon (NM_177613, exon 3 of 5)	2845.0	NM_001359817	216150.0	Mm.21981	NM_177613	ENSMUSG00000020307	Cdc34	AI327276|E2-CDC34|UBE2R1	cell division cycle 34	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-128709420-4	chr8	128709316	128709516	+	865.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010578, intron 3 of 15)	B3|SINE|B2	23762.0	NM_010578	16412.0	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28350684-4	chr7	28350593	28350793	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013647)	promoter-TSS (NM_013647)	4.0	NM_013647	20055.0	Mm.702	NM_013647	ENSMUSG00000037563	Rps16	AA420385|AI317031	ribosomal protein S16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-36050251-2	chr2	36050151	36050351	+	798.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026703)	promoter-TSS (NM_026703)	778.0	NM_029309	75495.0	Mm.276332	NM_029309	ENSMUSG00000026894	Morn5	1700010A17Rik	MORN repeat containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-129248571-2	chr6	129248471	129248671	+	735.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10089.0	NR_040268	76432.0	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-144720303-4	chr3	144720236	144720436	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001282042)	promoter-TSS (NM_001282042)	-1.0	NM_001282037	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-27175165-2	chr7	27175065	27175265	+	824.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_037283)	TTS (NR_037283)	928.0	NR_037283	100526505.0		NR_037283	ENSMUSG00000093348	Mir3101	mir-3101|mmu-mir-3101	microRNA 3101	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81011369-6	chr15	81011145	81011345	+	835.888916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_134091, exon 20 of 22)	exon (NM_134091, exon 20 of 22)	33480.0	NM_134091	105835.0	Mm.274943	NM_134091	ENSMUSG00000042303	Sgsm3	1810012I01Rik|AI428557|BB175482|Cip85|R75178|RUSC3|Rutbc3	small G protein signaling modulator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-131560173-1	chr3	131560073	131560273	+	790.0	f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	-4595.0	NM_001289479	23971.0	Mm.244912	NM_011863	ENSMUSG00000028032	Papss1	AI325286|Asapk|SK1	3'-phosphoadenosine 5'-phosphosulfate synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-24062876-2	chr16	24062776	24062976	+	644.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19814.0	NR_155457	108168278.0	Mm.417246	NR_155457		Gm46545	-	predicted gene, 46545	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35210809-2	chr17	35210709	35210909	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5458.0	NM_010735	16992.0	Mm.87787	NM_010735	ENSMUSG00000024402	Lta	LT|LT-[a]|LT-alpha|LT[a]|LTalpha|Ltx|TNF-beta|TNFSF1|Tnfb|Tnfsf1b|Tnlg1e|hlb382	lymphotoxin A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-36579179-3	chr5	36579071	36579271	+	831.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113362, intron 2 of 14)	MIR|SINE|MIR	3226.0	NM_133910	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-104219992-4	chr8	104219874	104220074	+	865.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001141922)	TTS (NM_001141922)	28584.0	NR_045642	57813.0	Mm.183110	NM_021028	ENSMUSG00000035824	Tk2	AU024611|mt-TK	thymidine kinase 2, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-54218984-4	chr13	54218898	54219098	+	696.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153432, intron 2 of 3)	intron (NR_153432, intron 2 of 3)	26865.0	NR_153432	15466.0	Mm.57243	NM_008286	ENSMUSG00000034987	Hrh2	H2R|HH2R	histamine receptor H2	protein-coding	1.00802919894454	0.533869119532768	0.524962016942495	0.518054483344974	0.915113243823894	1.18765421704687	0.717785106116518	1.28007282718147	2.05912413684725	0.211781722313891	1
Merged-chr3-137870516-2	chr3	137870450	137870650	+	803.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033155, intron 1 of 7)	intron (NM_001033155, intron 1 of 7)	2875.0	NM_001033155	70604.0	Mm.256488	NM_001033155	ENSMUSG00000074212	Dnajb14	5730496F10Rik	DnaJ heat shock protein family (Hsp40) member B14	protein-coding	0.262191504153766	1.34577308159628	0.283806725652876	1.12364822090224	0.264233242371101	0.888358318615121	0.286082366325028	0.277187181711277	-2.00187753284854	0.306077414038194	1
Merged-chr2-165400417-3	chr2	165400310	165400510	+	735.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029021)	promoter-TSS (NM_029021)	-16.0	NM_029021	74614.0	Mm.72179	NM_029021	ENSMUSG00000027670	Ocstamp	4833422F24Rik|OC-STAMP	osteoclast stimulatory transmembrane protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-69437329-1	chr12	69437229	69437429	+	753.0	f0_balb.idr	Intergenic	Intergenic	38221.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-120613397-4	chr5	120613269	120613469	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029096)	promoter-TSS (NM_029096)	239.0	NM_028041	71990.0	Mm.24495	NM_028041	ENSMUSG00000029599	Ddx54	2410015A15Rik|AI414901|DP97	DEAD (Asp-Glu-Ala-Asp) box polypeptide 54	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32441672-3	chr2	32441572	32441772	+	834.888855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146118, intron 1 of 10)	intron (NM_146118, intron 1 of 10)	-8785.0	NM_194335	71254.0	Mm.102341	NM_194335	ENSMUSG00000039164	Naif1	2310007O20Rik|4933440H19Rik	nuclear apoptosis inducing factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3429929-3	chr12	3429825	3430025	+	843.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001270988, intron 1 of 11)	intron (NM_001270988, intron 1 of 11)	3068.0	NM_172421	75302.0	Mm.120475	NM_172421	ENSMUSG00000037486	Asxl2	4930556B16Rik|mKIAA1685	additional sex combs like 2, transcriptional regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-151842141-5	chr4	151842007	151842207	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081557, intron 1 of 23)	intron (NM_001081557, intron 1 of 23)	19661.0	NM_001081557	100072.0	Mm.318846	NM_001081557	ENSMUSG00000014592	Camta1	1810059M14Rik|2310058O09Rik|AI316882|AW987475|mKIAA0833	calmodulin binding transcription activator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-36217179-4	chr2	36217067	36217267	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13259.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-43540308-4	chr16	43540224	43540424	+	835.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181058, intron 3 of 6)	intron (NM_181058, intron 3 of 6)	-100331.0	NR_030576	100124467.0		NR_030576	ENSMUSG00000076372	Mir568	Mirn568|mmu-mir-568	microRNA 568	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-42866742-4	chr13	42866631	42866831	+	887.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302636, intron 1 of 12)	intron (NM_001302636, intron 1 of 12)	484.0	NM_001302636	218194.0	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-46873935-1	chr14	46873835	46874035	+	567.0	f0_balb.idr	Intergenic	LTR50|LTR|ERVL	-9030.0	NM_028966	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	0.553805814862883	0.581011189843048	1.16075238237008	1.11891370429296	0.9555634263237	1.22544103129223	0.761664328783368	0.740075629266932	0.219749147402547	0.886694695116378	1
Merged-chr19-47436288-1	chr19	47436188	47436388	+	672.5	f1_c57bl6.idr	intron (NM_008018, intron 1 of 14)	intron (NM_008018, intron 1 of 14)	28123.0	NM_001164717	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	1.99188581319709	1.30074061533018	1.41124793085045	1.49737379476609	1.94549498747844	0.868131884622002	0.851259062658921	0.836516806253858	-1.09315839989005	0.429030001143083	0.903416445927044
Merged-chr2-164387520-1	chr2	164387420	164387620	+	588.0	f1_c57bl6.idr	Intergenic	Intergenic	-15674.0	NM_009036	19668.0	Mm.473794	NM_009036	ENSMUSG00000017007	Rbpjl	RBP-L|Rbpsuhl	recombination signal binding protein for immunoglobulin kappa J region-like	protein-coding	1.03906114629703	0.852485498759793	1.06068879537517	1.02003706647798	0.749471223087107	0.49825913484413	0.490438051247545	0.483752343781362	-2.91367276631997	0.0927085148240675	1
Merged-chr3-103207257-2	chr3	103207157	103207357	+	720.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16A|LTR|ERVL	35602.0	NM_001356331	68183.0	Mm.104919	NM_026602	ENSMUSG00000005687	Bcas2	6430539P16Rik|AI132645|C76366|C80030	breast carcinoma amplified sequence 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-163964297-2	chr1	163964197	163964397	+	608.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357049, intron 17 of 24)	intron (NM_001357049, intron 17 of 24)	30499.0	NM_001357049	381306.0	Mm.28152	NM_201364	ENSMUSG00000041406	BC055324	-	cDNA sequence BC055324	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34291187-1	chr17	34291087	34291287	+	798.0	f1_c57bl6.idr	Intergenic	URR1A|DNA|hAT-Charlie	-3416.0	NM_010378	14960.0	Mm.235338	NM_010378	ENSMUSG00000036594	H2-Aa	Aalpha|H-2Aa|H2Aa|I-Aalpha|IAalpha|Ia-1|Ia1	histocompatibility 2, class II antigen A, alpha	protein-coding	1.44779922863194	3.2668274849847	1.29439850831977	3.13147237843594	1.6811797549017	3.55652790728406	2.22297024423091	2.42590001160892	0.133903071904426	0.890256320928748	0.998431161219273
Merged-chr14-50807801-4	chr14	50807727	50807927	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_002142)	promoter-TSS (NR_002142)	-56.0	NR_002142	85029.0		NR_002142	ENSMUSG00000092837	Rpph1	Gm24821|H1RNA|Rmrp5|Rpr	ribonuclease P RNA component H1	ncRNA	8.63191344090181	8.62049735608064	8.78207634955464	8.54827537520498	8.83289799287118	8.59647657564448	8.89194101226549	8.44941365008795	0.0582528546670593	0.627404240006842	0.980912176761026
Merged-chr5-72656674-3	chr5	72656513	72656713	+	907.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081205, intron 1 of 5)	intron (NM_001081205, intron 1 of 5)	8817.0	NM_001081205	70701.0	Mm.38884	NM_001081205	ENSMUSG00000067219	Nipal1	3830408G10Rik|Npal1	NIPA-like domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-79527508-4	chr11	79527398	79527598	+	979.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001033711, exon 2 of 2)	exon (NM_001033711, exon 2 of 2)	3111.0	NM_146023	101488212.0	Mm.439665	NM_146023	ENSMUSG00000070354	Evi2	Evi2a-evi2b|Gm21975	ecotropic viral integration site 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-107637385-2	chr11	107637285	107637485	+	879.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_105897)	promoter-TSS (NR_105897)	-337.0	NR_105897	102465562.0		NR_105897	ENSMUSG00000098497	Mir6932	Gm27691|mmu-mir-6932	microRNA 6932	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-50050533-4	chr11	50050441	50050641	+	977.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290750, intron 1 of 7)	intron (NM_001290750, intron 1 of 7)	-19161.0	NR_029769	723845.0		NR_029769	ENSMUSG00000065417	Mir340	Mirn340|mir-340|mmu-mir-340	microRNA 340	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114925169-1	chr11	114925069	114925269	+	540.0	f1_balb.idr	intron (NM_001347651, intron 3 of 3)	intron (NM_001347651, intron 3 of 3)	9217.0	NM_001347651	217304.0	Mm.185355	NM_199221	ENSMUSG00000063193	Cd300lb	CLM-7|Clm7|Gm253|LMIR5	CD300 molecule like family member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-34073938-4	chr11	34073815	34074015	+	801.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010696, intron 8 of 20)	intron (NM_010696, intron 8 of 20)	24639.0	NR_155520	76874.0	Mm.437529	NR_155520		4930469K13Rik	-	RIKEN cDNA 4930469K13 gene	ncRNA	3.19462335057196	3.49053558216549	3.93980479574191	3.4456068864136	3.56747752884798	2.78545837422417	3.48812532960578	3.67517246914013	-0.175778552010966	0.750146974657109	0.998431161219273
Merged-chr12-31920847-2	chr12	31920747	31920947	+	620.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163126, intron 21 of 22)	intron (NM_001163126, intron 21 of 22)	29398.0	NM_177993	73389.0	Mm.390461	NM_153198	ENSMUSG00000002996	Hbp1	1700058O05Rik|BE629963|C330012F01Rik|C86454	high mobility group box transcription factor 1	protein-coding	-0.371883900460004	-0.611631186801383	-0.614710431056877	-0.331658125395096	-0.62039764731394	-0.610934734972429	-0.176908423494807	-0.616662213637401	-0.137376875486648	0.959642646199886	1
Merged-chr6-116682044-2	chr6	116681944	116682144	+	694.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-8208.0	NM_178045	213391.0	Mm.257931	NM_178045	ENSMUSG00000042129	Rassf4	3830411C14Rik|AD037|AI586137	Ras association (RalGDS/AF-6) domain family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76745275-4	chr15	76745175	76745375	+	995.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198420, intron 3 of 10)	intron (NM_198420, intron 3 of 10)	-21430.0	NM_176828	223665.0	Mm.291713	NM_145472	ENSMUSG00000116138	C030006K11Rik	1110033I13Rik	RIKEN cDNA C030006K11 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-61909492-2	chr8	61909393	61909593	+	788.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6799.0	NM_001293772	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-83068886-3	chr13	83068865	83069065	+	582.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-370632.0	NR_039537	100628621.0		NR_039537	ENSMUSG00000106655	Mir3961	mmu-mir-3961	microRNA 3961	ncRNA	1.20223485611599	0.761462393988318	1.1416644348771	1.09978215832899	1.03891540190955	0.562644686721998	0.553768051063846	0.546151888866234	-1.99815833571846	0.223260546466256	1
Merged-chr10-70527758-2	chr10	70527658	70527858	+	565.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359551, intron 7 of 14)	intron (NM_001359551, intron 7 of 14)	65054.0	NM_001162846	70911.0	Mm.19825	NM_178621	ENSMUSG00000037747	Phyhipl	4921522K17Rik|AI267048	phytanoyl-CoA hydroxylase interacting protein-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-60874541-4	chr19	60874442	60874642	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007452)	promoter-TSS (NM_007452)	-4.0	NM_007452	11757.0	Mm.29821	NM_007452	ENSMUSG00000024997	Prdx3	AW822249|Aop1|D0Tohi1|Ef2l|Mer5|Prx3|SP22|TDXM	peroxiredoxin 3	protein-coding	5.46011959129388	5.37867194028968	4.96366682834931	5.21884053325866	5.86363808781378	5.54139516083258	4.45863333087213	4.97441817483432	0.0555253166686792	0.871193866494473	0.998431161219273
Merged-chr2-84627429-4	chr2	84627338	84627538	+	999.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007615, intron 1 of 19)	intron (NM_007615, intron 1 of 19)	22042.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-57200700-1	chr16	57200600	57200800	+	607.25	f0_balb.idr	intron (NM_026254, intron 5 of 17)	MIRc|SINE|MIR	771.0	NM_001358434	67581.0	Mm.257819	NM_026254	ENSMUSG00000022749	Tbc1d23	4930451A13Rik|AU015720|AU043671|AU043778|D030022P07Rik|W51689	TBC1 domain family, member 23	protein-coding	0.815161456626911	0.763694536319716	1.13837454166442	0.551581642539748	1.21087588858994	0.769172457645727	0.560018312624326	1.10435055671907	0.544796507821776	0.725825749780369	1
Merged-chr7-34302097-4	chr7	34301949	34302149	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16440.0	NM_172741	233103.0	Mm.491097	NM_172741	ENSMUSG00000066571	4931406P16Rik	AA553327|mKIAA0355	RIKEN cDNA 4931406P16 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-138522543-2	chr3	138522443	138522643	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER20C_Mm|LTR|ERVK	-3648.0	NM_007917	13684.0	Mm.3941	NM_007917	ENSMUSG00000028156	Eif4e	EG668879|Eif4e-ps|If4e|eIF-4E	eukaryotic translation initiation factor 4E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165922557-4	chr2	165922420	165922620	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37682.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	3.398169256979	4.58682779575118	4.09274834002583	4.60059148021829	4.7091443026447	4.85452659469009	4.66698306620355	3.93084277609559	0.433867119891169	0.319669106240454	0.821951596143819
Merged-chr4-123748166-2	chr4	123748066	123748266	+	667.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023423, intron 1 of 4)	intron (NM_023423, intron 1 of 4)	2133.0	NM_023423	68050.0	Mm.27903	NM_023423	ENSMUSG00000023075	Akirin1	6330407G11Rik	akirin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-102078590-2	chr5	102078490	102078690	+	790.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8669.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-48642969-3	chr6	48642865	48643065	+	671.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4269.0	NM_001077410	243374.0	Mm.86514	NM_212486	ENSMUSG00000064262	Gimap8	Gm457|IAN9|IMAP8	GTPase, IMAP family member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91949979-1	chr2	91949879	91950079	+	547.0	f1_c57bl6.idr	intron (NM_001166597, intron 1 of 31)	intron (NM_001166597, intron 1 of 31)	369.0	NM_001166597	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-54659134-3	chr6	54659033	54659233	+	854.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	-22491.0	NM_001289741	68235.0	Mm.233860	NM_026629	ENSMUSG00000038065	Mturn	2410066E13Rik|AI448550|B230212L03Rik	maturin, neural progenitor differentiation regulator homolog (Xenopus)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-83922804-4	chr10	83922693	83922893	+	934.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	177904.0	NR_152790	102637349.0	Mm.402869	NR_152790	ENSMUSG00000111049	Gm34184	-	predicted gene, 34184	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19910940-3	chr7	19910829	19911029	+	913.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027514, intron 4 of 7)	intron (NM_027514, intron 4 of 7)	10214.0	NM_027514	52118.0	Mm.227506	NM_027514	ENSMUSG00000040511	Pvr	3830421F03Rik|CD155|D7Ertd458e|HVED|PVS|Taa1|Tage4|mE4|necl-5	poliovirus receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-90219662-2	chr7	90219562	90219762	+	586.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	45770.0	NM_029256	75338.0	Mm.487222	NM_029256	ENSMUSG00000030617	Ccdc83	4930549K11Rik|4930554C01Rik|4932423M01Rik	coiled-coil domain containing 83	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31254480-2	chr14	31254380	31254580	+	637.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027088, intron 7 of 16)	intron (NM_027088, intron 7 of 16)	2991.0	NM_027088	104416.0	Mm.3779	NM_027088	ENSMUSG00000021901	Bap1	2300006C11Rik|AA989761|AW553466|mKIAA0272|uch-x4	Brca1 associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-98666498-7	chr2	98666374	98666574	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	SYNREP_MM|Satellite|Satellite	1198817.0	NM_178725	241568.0	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-34523454-2	chr19	34523354	34523554	+	929.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_021460, exon 3 of 10)	exon (NM_021460, exon 3 of 10)	4020.0	NM_001111100	16889.0	Mm.157545	NM_021460	ENSMUSG00000024781	Lipa	AA960673|Lal|Lip-1|Lip1	lysosomal acid lipase A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-33968703-4	chr17	33968623	33968823	+	898.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10068.0	NR_004446	630499.0	Mm.440940	NM_001081015		H2-K2	EG630499|Gm7035|H-2K1|H-2K1K|H-2K2|H2-K1	histocompatibility 2, K region locus 2	pseudo	4.95801952205665	4.51255536615222	6.00207731045683	4.89317561480382	5.02339713857308	4.87013796941533	2.75448387134871	5.68302876150215	-0.347597062741827	0.650917899779791	0.985970995710291
Merged-chr11-75191367-1	chr11	75191267	75191467	+	558.0	f1_c57bl6.idr	promoter-TSS (NM_144491)	promoter-TSS (NM_144491)	-884.0	NM_144491	116905.0	Mm.41496	NM_144491	ENSMUSG00000078789	Dph1	2310011M22Rik|4930488F09Rik|AW551873|Dph2l1|Ovca1	diphthamide biosynthesis 1	protein-coding	-0.920746059108256	-0.900210136228289	-0.910868657888965	-0.914546390428102	-0.919816208124075	0.187426340199569	-0.909824961773136	-0.913900867410677	3.55267203040657	0.234146038776258	1
Merged-chr4-107686257-3	chr4	107686135	107686335	+	789.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2073.0	NM_019872	56296.0	Mm.141324	NM_019872	ENSMUSG00000028610	Dmrtb1	Dmrt6|Prp13	DMRT-like family B with proline-rich C-terminal, 1	protein-coding	-1.43172712806865	-1.3992492906874	-1.40907085678131	-1.41713858359971	-0.932192548427885	-1.39712091634321	-1.40684746950024	-1.41569446435649	2.19283191591698	0.528233640655333	1
Merged-chr11-85710365-4	chr11	85710265	85710465	+	967.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045875, intron 1 of 5)	intron (NR_045875, intron 1 of 5)	9379.0	NR_045875	71489.0	Mm.442482	NR_045875	ENSMUSG00000086199	Bcas3os1	8430403D17Rik	breast carcinoma amplified sequence 3, opposite strand 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-31274820-1	chr16	31274720	31274920	+	1000.0	f0_balb.idr	intron (NM_025800, intron 1 of 5)	CpG	457.0	NM_025800	66849.0	Mm.291593	NM_025800	ENSMUSG00000047714	Ppp1r2	0610025N14Rik|2310007G06Rik|4930440J04Rik|5430408E15Rik|D16Ertd248e|I-2|IPP-2	protein phosphatase 1, regulatory (inhibitor) subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-142712953-4	chr2	142712868	142713068	+	999.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081133, exon 19 of 26)	exon (NM_001081133, exon 19 of 26)	188496.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55715122-2	chr19	55715022	55715222	+	563.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12918.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-107554008-2	chr4	107553908	107554108	+	585.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_147221, intron 2 of 10)	intron (NM_147221, intron 2 of 10)	119289.0	NM_147221	230587.0	Mm.331757	NM_147221	ENSMUSG00000034762	Glis1	Gli5|Gli6|GliH1	GLIS family zinc finger 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-89422165-4	chr6	89422079	89422279	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167736, intron 4 of 6)	intron (NM_001167736, intron 4 of 6)	-59566.0	NM_008881	18844.0	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-37258755-3	chr6	37258660	37258860	+	973.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347104, intron 1 of 32)	intron (NM_001347104, intron 1 of 32)	41216.0	NM_001081206	320127.0	Mm.119469	NM_001081206	ENSMUSG00000038665	Dgki	6430604M11Rik|C130010K08Rik	diacylglycerol kinase, iota	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94591804-4	chr10	94591729	94591929	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_172051)	TTS (NM_172051)	-5630.0	NR_106070	102466817.0		NR_106070	ENSMUSG00000098544	Mir7211	Gm27536|mmu-mir-7211	microRNA 7211	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-143527668-4	chr5	143527588	143527788	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347530, intron 1 of 6)	CpG	305.0	NM_009007	19353.0	Mm.292510	NM_009007	ENSMUSG00000001847	Rac1	AL023026|D5Ertd559e	Rac family small GTPase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-52238125-2	chr10	52238025	52238225	+	598.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347444, intron 1 of 9)	intron (NM_001347444, intron 1 of 9)	4506.0	NM_025705	66686.0	Mm.62982	NM_025705	ENSMUSG00000019891	Dcbld1	4631413K11Rik	discoidin, CUB and LCCL domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-8593411-2	chr12	8593311	8593511	+	757.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177802, intron 1 of 6)	ERVB4_1-I_MM-int|LTR|ERVK	5655.0	NM_177802	328059.0	Mm.46326	NM_177802	ENSMUSG00000020600	Slc7a15	Arpat	solute carrier family 7 (cationic amino acid transporter, y+ system), member 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-111107593-4	chr10	111107484	111107684	+	978.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-57218.0	NM_001003717	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-153486978-3	chr1	153486889	153487089	+	987.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007842, intron 1 of 27)	CpG	671.0	NM_007842	13211.0	Mm.20000	NM_007842	ENSMUSG00000042699	Dhx9	AI326842|Ddx9|HEL-5|NDHII|RHA|mHEL-5	DEAH (Asp-Glu-Ala-His) box polypeptide 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-158361528-4	chr2	158361414	158361614	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027887)	promoter-TSS (NR_027887)	-5.0	NR_015463	68108.0	Mm.119198	NR_015463		Snhg17	9430008C03Rik	small nucleolar RNA host gene 17	ncRNA	-2.18292257394068	-2.15545247547656	-2.03304972317742	-2.17058342868585	-2.18099422382073	-2.1536522739386	-2.16187909550322	-2.16936197735154	-0.683654500252594	0.846597994014493	1
Merged-chr4-150066956-2	chr4	150066861	150067061	+	873.0	f0_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-1493.0	NR_029751	723848.0		NR_029751	ENSMUSG00000065493	Mir34a	Mirn34a|mir-34a|mmu-mir-34a	microRNA 34a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-4600827-2	chr2	4600727	4600927	+	737.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177844, intron 7 of 11)	intron (NM_001177844, intron 7 of 11)	41073.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-106890641-2	chr9	106890529	106890729	+	773.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029103, intron 2 of 3)	intron (NM_029103, intron 2 of 3)	1309.0	NM_029103	74840.0	Mm.29778	NM_029103	ENSMUSG00000032575	Manf	3230402M22Rik|AA407711|AA408789|AA673178|Armet|D17914|D18Mgi17	mesencephalic astrocyte-derived neurotrophic factor	protein-coding	1.35210166439766	2.73193457968521	1.19677634291544	2.47603561142896	2.36293902465109	1.23506771450934	2.27273887140241	2.30430773335969	-0.011983097146593	0.991220928992311	0.998431161219273
Merged-chr14-8132966-4	chr14	8132842	8133042	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360314, intron 4 of 19)	intron (NM_001360314, intron 4 of 19)	34731.0	NM_001360315	218699.0	Mm.29515	NM_145458	ENSMUSG00000033885	Pxk	C230080L11Rik|D14Ertd813e|Monaka|Slob	PX domain containing serine/threonine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-85285383-3	chr13	85285286	85285486	+	706.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145452, intron 1 of 24)	PB1|SINE|Alu	4100.0	NM_145452	218397.0	Mm.259653	NM_145452	ENSMUSG00000021549	Rasa1	Gap|RasGAP|Rasa	RAS p21 protein activator 1	protein-coding	0.531956448393249	0.271978792856655	0.60770135577992	0.258868906179037	0.935718562028236	1.03637697482108	0.266226396831859	0.259870931631873	1.5550788244098	0.415389439203652	1
Merged-chr9-37232611-3	chr9	37232513	37232713	+	924.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020258, intron 17 of 17)	intron (NM_020258, intron 17 of 17)	23125.0	NM_020258	56857.0	Mm.440037	NM_020258	ENSMUSG00000032122	Slc37a2	G3PP|Slc37a1|cI-2|ci2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-121374713-2	chr14	121374626	121374826	+	595.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145465, intron 1 of 10)	intron (NM_145465, intron 1 of 10)	4504.0	NM_145465	223255.0	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	1.02726440513069	1.02952889607333	1.46589098216552	0.614516495396864	0.602222124028089	1.03838414825782	1.48070433651049	0.616025384914729	-0.325761134381393	0.834796830499786	0.998431161219273
Merged-chr17-70753720-4	chr17	70753629	70753829	+	975.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347411, intron 9 of 14)	intron (NM_001347411, intron 9 of 14)	93048.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-31852101-3	chr11	31852008	31852208	+	932.2666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18832.0	NM_001290676	67579.0	Mm.339792	NM_026252	ENSMUSG00000020300	Cpeb4	Cpe-bp4|Cpeb-4|mCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-184471543-4	chr1	184471440	184471640	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	86151.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150557046-4	chr4	150556940	150557140	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 11 of 22)	intron (NM_001085492, intron 11 of 22)	95134.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-134315987-2	chr5	134315887	134316087	+	656.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger13a|DNA|TcMar-Tigger	-1227.0	NM_010365	14886.0	Mm.261570	NM_010365	ENSMUSG00000060261	Gtf2i	6030441I21Rik|BAP-135|Diws1t|GtfII-I|Spin|TFII-I|WBSCR6	general transcription factor II I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-110944486-2	chr9	110944386	110944586	+	803.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011562, intron 1 of 5)	B2_Mm2|SINE|B2	1672.0	NM_011562	21667.0	Mm.5090	NM_011562	ENSMUSG00000032494	Tdgf1	CR1|cripto	teratocarcinoma-derived growth factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-54962059-2	chr11	54961959	54962159	+	640.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199275, intron 1 of 18)	intron (NM_001199275, intron 1 of 18)	881.0	NM_021327	57783.0	Mm.259671	NM_021327	ENSMUSG00000020400	Tnip1	ABIN|ABIN-1|ABIN1|AU018810|Naf1|Nef|VAN	TNFAIP3 interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-5431015-2	chr11	5430915	5431115	+	866.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080924, intron 1 of 8)	intron (NM_001080924, intron 1 of 8)	13832.0	NM_001080924	407821.0	Mm.216313	NM_001080924	ENSMUSG00000041961	Znrf3	Gm1167	zinc and ring finger 3	protein-coding	0.604843124285222	2.50449853146066	2.6645435310635	0.644691122813835	1.5470749695329	0.70118955223834	0.673528964697146	0.931523533880975	-2.597339329284	0.269385707347246	0.772801970187325
Merged-chr17-71595230-4	chr17	71595131	71595331	+	826.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027953, intron 1 of 2)	intron (NR_027953, intron 1 of 2)	3050.0	NR_027953	68789.0	Mm.75202	NR_015549	ENSMUSG00000085492	Trmt61b	1110039F03Rik|623451|Gm6431	tRNA methyltransferase 61B	ncRNA	2.03240079637882	1.19336091145417	1.42140226346988	1.38447232970572	2.05052837028199	1.89033990964749	2.6189421310364	2.86988381034257	2.24168669016489	0.028143847586534	0.226827060015608
Merged-chr4-145837221-2	chr4	145837121	145837321	+	797.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033612)	promoter-TSS (NR_033612)	2.0	NR_033612	236069.0	Mm.276881	NR_033612	ENSMUSG00000096233	Gm13238	-	carnitine deficiency-associated gene expressed in ventricle 3 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-33515497-4	chr6	33515404	33515604	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009148, intron 9 of 17)	intron (NM_009148, intron 9 of 17)	266376.0	NM_001347089	20336.0	Mm.265512	NM_009148	ENSMUSG00000029763	Exoc4	C78892|Sec8|Sec8l1	exocyst complex component 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-27172299-3	chr14	27172202	27172402	+	925.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289686, intron 2 of 12)	MTC|LTR|ERVL-MaLR	28309.0	NM_001289686	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-81518838-4	chr17	81518762	81518962	+	838.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 2 of 8)	intron (NR_104580, intron 2 of 8)	219525.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-38536542-4	chr2	38536444	38536644	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159631, intron 1 of 9)	intron (NM_001159631, intron 1 of 9)	24668.0	NM_001159631	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-56431424-2	chr18	56431324	56431524	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026240)	promoter-TSS (NM_026240)	-708.0	NM_026240	107022.0	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|Gramd2b|NS3TP2	GRAM domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-69439905-4	chr9	69439802	69440002	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13781.0	NM_007585	12306.0	Mm.238343	NM_007585	ENSMUSG00000032231	Anxa2	AW215814|Cal1h	annexin A2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-151684261-2	chr1	151684161	151684361	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_022018, intron 5 of 13)	intron (NM_022018, intron 5 of 13)	70466.0	NR_151474	102640772.0		NR_151473	ENSMUSG00000100594	2810414N06Rik	-	RIKEN cDNA 2810414N06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99664682-4	chr15	99664584	99664784	+	892.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5693.0	NM_009597	11419.0	Mm.440107	NM_009597	ENSMUSG00000023017	Asic1	AI843610|ASIC|ASIC1a|Accn2|B530003N02Rik|BNaC2	acid-sensing (proton-gated) ion channel 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-97824126-4	chr3	97823996	97824196	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039376, intron 4 of 46)	intron (NM_001039376, intron 4 of 46)	-56082.0	NR_110360	83679.0	Mm.129840	NM_031401	ENSMUSG00000038170	Pde4dip	4732458A06Rik|9430063L05Rik|C87016|D130016K21Rik|D3Bwg1078e|Usmg4|mKIAA0454	phosphodiesterase 4D interacting protein (myomegalin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-40730887-3	chr9	40730759	40730959	+	943.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133733, intron 1 of 6)	intron (NM_133733, intron 1 of 6)	44895.0	NM_133733	71566.0	Mm.280560	NM_133733	ENSMUSG00000032024	Clmp	9030425E11Rik|ACAM|ASP5|AW557819	CXADR-like membrane protein	protein-coding	2.05048715244521	1.28047148259615	1.47347403868332	0.890097219621252	3.24104095352992	0.967265852511085	3.08870631137274	0.895629055009811	2.15233784919116	0.260199232569339	0.761184263418464
Merged-chr9-21265213-4	chr9	21265138	21265338	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153583)	promoter-TSS (NM_153583)	-47.0	NM_153583	235040.0	Mm.440165	NM_153583	ENSMUSG00000002820	Atg4d	9830134P12Rik|APG4-D|Apg4d|Atg4dl|Autl4	autophagy related 4D, cysteine peptidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80144273-2	chr10	80144173	80144373	+	808.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347092, intron 2 of 2)	BC1_Mm|scRNA|scRNA	1958.0	NM_025313	66043.0	Mm.278560	NM_025313	ENSMUSG00000003072	Atp5d	0610008F14Rik|1500000I11Rik|AA960090|AI876556|AU020773|Atp5f1d|C85518	ATP synthase, H+ transporting, mitochondrial F1 complex, delta subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-8341948-2	chr5	8341848	8342048	+	576.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001007220, intron 2 of 28)	B1_Mur2|SINE|Alu	26212.0	NM_001007221	11496.0	Mm.275895	NM_001007220	ENSMUSG00000040537	Adam22	2900022I03Rik|AI854032|MDC2	a disintegrin and metallopeptidase domain 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100353644-2	chr11	100353528	100353728	+	635.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359052, intron 5 of 12)	intron (NM_001359052, intron 5 of 12)	2500.0	NM_001359052	15114.0	Mm.281700	NM_010404	ENSMUSG00000006930	Hap1	HAP-1	huntingtin-associated protein 1	protein-coding	1.71643364484308	0.830235472288948	0.820742813279132	1.24922360033021	1.07771610267077	0.83237993352496	1.68907749201499	1.25584805670222	0.136182858109029	0.926067558460841	0.998431161219273
Merged-chr11-82004326-2	chr11	82004226	82004426	+	651.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31251.0	NM_011333	20296.0	Mm.290320	NM_011333	ENSMUSG00000035385	Ccl2	AI323594|HC11|JE|MCAF|MCP-1|MCP1|SMC-CF|Scya2|Sigje	chemokine (C-C motif) ligand 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-26434538-1	chr8	26434438	26434638	+	558.0	f1_balb.idr	Intergenic	Intergenic	276369.0	NM_199042	73754.0	Mm.383241	NM_199042	ENSMUSG00000037214	Thap1	4833431A01Rik|AW490810	THAP domain containing, apoptosis associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-35294145-1	chr12	35294045	35294245	+	553.0	f1_balb.idr	Intergenic	B4A|SINE|B4	-99248.0	NR_030449	751520.0		NR_030449	ENSMUSG00000076253	Mir680-3	Mirn680-3	microRNA 680-3	ncRNA	1.96139127027102	2.64603213993088	1.20547366530704	2.18892415743605	2.81954572103319	1.74287849556533	1.21242813530648	2.20086072822825	0.0995877759472674	0.92589930093213	0.998431161219273
Merged-chr9-66136152-2	chr9	66136052	66136252	+	888.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026635, intron 3 of 4)	intron (NM_026635, intron 3 of 4)	9541.0	NM_026635	68250.0	Mm.27107	NM_026635	ENSMUSG00000032381	Fam96a	5730536A07Rik	family with sequence similarity 96, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-78445518-2	chr10	78445418	78445618	+	647.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_105873)	promoter-TSS (NR_105873)	-361.0	NR_105873	102466762.0		NR_105873	ENSMUSG00000098279	Mir6908	Gm27827|mmu-mir-6908	microRNA 6908	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55698287-3	chr14	55698159	55698359	+	919.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14829.0	NM_019984	21816.0	Mm.41964	NM_019984	ENSMUSG00000022218	Tgm1	2310004J08Rik|Tgase1	transglutaminase 1, K polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-27629626-4	chr3	27629506	27629706	+	803.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356953, intron 3 of 26)	intron (NM_001356953, intron 3 of 26)	-44611.0	NR_037275	100526525.0		NR_037275	ENSMUSG00000092695	Mir3092	mir-3092|mmu-mir-3092	microRNA 3092	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-43221432-4	chr10	43221328	43221528	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001168289)	promoter-TSS (NM_001168289)	-58.0	NM_027772	71365.0	Mm.490430	NM_027772	ENSMUSG00000038240	Pdss2	5430420P03Rik|Gm60|Plmp|kd|mDLP1	prenyl (solanesyl) diphosphate synthase, subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-63377850-4	chr9	63377744	63377944	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011840)	promoter-TSS (NM_011840)	8.0	NM_011840	23938.0	Mm.325746	NM_011840	ENSMUSG00000058444	Map2k5	AI324775|AI428457|MEK5|Mapkk5|Prkmk5	mitogen-activated protein kinase kinase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-79798430-4	chr10	79798328	79798528	+	932.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023128, intron 1 of 8)	MTE2b|LTR|ERVL-MaLR	4856.0	NM_001161747	18483.0	Mm.34650	NM_023128	ENSMUSG00000035863	Palm	-	paralemmin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-46905210-4	chr13	46905142	46905342	+	954.008301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010617, intron 2 of 37)	intron (NM_010617, intron 2 of 37)	24476.0	NM_010617	16553.0	Mm.342703	NM_010617	ENSMUSG00000021375	Kif13a	4930505I07Rik|mKIAA4109	kinesin family member 13A	protein-coding	4.98610907688531	4.68116328519169	4.6265933789646	3.79365614894387	4.3718460271475	3.39274145050999	3.77632863871374	3.57104027503987	-0.982923109292428	0.033044754782038	0.254365462708442
Merged-chr3-29938886-2	chr3	29938786	29938986	+	634.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47869.0	NR_110437	102636083.0		NR_110437	ENSMUSG00000102590	Mannr	Manr	Mecom adjacent non-protein coding RNA	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116654487-3	chr11	116654387	116654587	+	990.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030206)	promoter-TSS (NM_030206)	-174.0	NM_030206	114886.0	Mm.34598	NM_030206	ENSMUSG00000020810	Cygb	3110001K20Rik|HGb|Staap	cytoglobin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-17835873-2	chr17	17835773	17835973	+	886.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162909, intron 2 of 8)	intron (NM_001162909, intron 2 of 8)	4898.0	NM_001162909	75202.0	Mm.227456	NM_029205	ENSMUSG00000080316	Spaca6	4930546H06Rik|9530079D04Rik|B230206P06Rik|Ncrna00085|SPACA6A|let-7e|mir-125a|mir-99b	sperm acrosome associated 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-38382721-4	chr15	38382567	38382767	+	952.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Charlie15a|DNA|hAT-Charlie	-81956.0	NM_001289471	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-124434561-4	chr8	124434453	124434653	+	988.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_171824)	promoter-TSS (NM_171824)	-617.0	NM_171824	209966.0	Mm.234233	NM_171824	ENSMUSG00000050751	Pgbd5	2900019M05Rik|AI854313	piggyBac transposable element derived 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-3540124-2	chr5	3540024	3540224	+	786.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-3709.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-58982224-3	chr11	58982084	58982284	+	882.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001290988, exon 3 of 7)	exon (NM_001290988, exon 3 of 7)	4091.0	NM_053168	94091.0	Mm.248049	NM_053168	ENSMUSG00000020455	Trim11	-	tripartite motif-containing 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167939707-4	chr2	167939628	167939828	+	996.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011201, intron 1 of 8)	intron (NM_011201, intron 1 of 8)	7401.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-163480462-2	chr2	163480362	163480562	+	593.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7833.0	NM_173397	228859.0	Mm.242917	NM_173397	ENSMUSG00000048486	Fitm2	AI414861|D930001I22Rik|Fit2	fat storage-inducing transmembrane protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-63058272-2	chr9	63058172	63058372	+	662.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-77393.0	NM_019663	56469.0	Mm.431253	NM_019663	ENSMUSG00000032405	Pias1	2900068C24Rik|Ddxbp1|GBP	protein inhibitor of activated STAT 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-138012291-2	chr4	138012169	138012369	+	976.25	f0_balb.idr|f1_balb.idr	intron (NM_001355699, intron 1 of 32)	intron (NM_001355699, intron 1 of 32)	14444.0	NM_001355700	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	1.49951518317976	1.01699566659228	0.989972635540165	1.73728576272176	1.98538571016431	2.45774720961209	0.996035049042815	2.64235613384634	2.23845121614929	0.0633150076043762	0.374952350067772
Merged-chr7-55874937-4	chr7	55874843	55875043	+	880.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001164661, exon 7 of 32)	exon (NM_001164661, exon 7 of 32)	32872.0	NM_001164661	20430.0	Mm.37249	NM_011370	ENSMUSG00000030447	Cyfip1	E030028J09Rik|P140SRA-1|P140sra1|Shyc|Sra-1|Sra1|l(7)1Rl|l71Rl|l7Rl1|mKIAA0068|pl-1	cytoplasmic FMR1 interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99316994-2	chr15	99316894	99317094	+	732.700012	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001348256)	TTS (NM_001348256)	13710.0	NM_001348256	54614.0	Mm.358668	NM_018786	ENSMUSG00000023007	Prpf40b	2610317D23Rik|Hypc	pre-mRNA processing factor 40B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70198526-1	chr11	70198426	70198626	+	815.5	f0_balb.idr	Intergenic	RLTR19B|LTR|ERVK	-15384.0	NM_153081	216867.0	Mm.289238	NM_153081	ENSMUSG00000040938	Slc16a11	AB041591|MCT 11|MNCb-2717	solute carrier family 16 (monocarboxylic acid transporters), member 11	protein-coding	-1.08681686225527	-1.06505171483667	-1.07664717469459	-1.08334602956848	-0.935709748644639	-1.06253893031385	-0.48768075486768	-1.08298057675382	2.82610472687119	0.369930880125731	1
Merged-chr2-119263117-1	chr2	119263017	119263217	+	784.0	f0_balb.idr	Intergenic	Intergenic	8109.0	NM_145530	228543.0	Mm.120274	NM_145530	ENSMUSG00000034226	Rhov	A030005A06Rik|Arhv	ras homolog family member V	protein-coding	0.573669506071707	1.88557219592926	1.96775105904988	0.597302267919564	0.961484754607836	0.632155405558493	0.614898599107446	1.32405107532635	-1.81755880700564	0.245459442475422	0.744695479809537
Merged-chr15-83182153-3	chr15	83182058	83182258	+	895.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9950.0	NM_029787	109754.0	Mm.22560	NM_029787	ENSMUSG00000018042	Cyb5r3	0610016L08Rik|2500002N19Rik|C85115|Dia-1|Dia1|WU:AL591952.1-001|WU:AL591952.1-002|WU:AL591952.1-003|WU:Cyb5r3	cytochrome b5 reductase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-59731781-2	chr9	59731677	59731877	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18872.0	NM_001172069	71599.0	Mm.279070	NM_027838	ENSMUSG00000051705	Senp8	9130010J17Rik|AU020827|Den1|Nedp1|Prsc2	SUMO/sentrin specific peptidase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-103462753-4	chr15	103462633	103462833	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_153505, exon 7 of 31)	exon (NM_153505, exon 7 of 31)	8908.0	NM_153505	105855.0	Mm.30805	NM_153505	ENSMUSG00000022488	Nckap1l	4930568P13Rik|AI463083|Hem1|Hemp1	NCK associated protein 1 like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106702761-4	chr11	106702650	106702850	+	754.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305158, intron 2 of 14)	intron (NM_001305158, intron 2 of 14)	12531.0	NM_001305158	18613.0	Mm.343951	NM_008816	ENSMUSG00000020717	Pecam1	C85791|Cd31|PECAM-1|Pecam	platelet/endothelial cell adhesion molecule 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-22818224-1	chr14	22818124	22818324	+	612.0	f0_balb.idr	intron (NM_028275, intron 5 of 6)	intron (NM_028275, intron 5 of 6)	-275426.0	NR_046307	74896.0	Mm.444661	NR_046307	ENSMUSG00000114412	4930405A10Rik	4930456G20Rik	RIKEN cDNA 4930405A10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-8412433-3	chr16	8412316	8412516	+	760.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029070, intron 2 of 3)	intron (NM_029070, intron 2 of 3)	12720.0	NM_029070	74720.0	Mm.159318	NM_029070	ENSMUSG00000022715	Tmem114	4930511J11Rik|Cldn26	transmembrane protein 114	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-4808304-1	chr6	4808204	4808404	+	556.0	f0_balb.idr	Intergenic	Intergenic	60998.0	NM_130877	170676.0	Mm.320575	NM_130877	ENSMUSG00000092035	Peg10	AA407948|Edr|HB-1|MEF3L|Mar2|Mart2|MyEF-3|Rtl2	paternally expressed 10	protein-coding	0.840089517518121	1.82197988791396	1.62510941349218	1.09289933496753	0.844259399388152	2.06220074167696	2.07572597324648	1.09807731672906	0.725199956373415	0.579164553540857	0.965985075107763
Merged-chr15-68377934-4	chr15	68377833	68378033	+	809.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36644.0	NR_029718	387228.0		NR_029718	ENSMUSG00000065437	Mir30d	Mirn30d|mir-30d|mmu-mir-30d	microRNA 30d	ncRNA	2.75042276912962	2.76097938132509	3.22224493090647	1.79499859973735	3.00383784043032	3.00463925055465	2.80306189869188	2.60726560680689	0.25069177871124	0.732397200856734	0.998431161219273
Merged-chr10-43841242-4	chr10	43841130	43841330	+	979.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13B1|LTR|ERVK	15323.0	NR_131055	71018.0	Mm.410796	NR_131055	ENSMUSG00000111342	4933404K13Rik	-	RIKEN cDNA 4933404K13 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-95306552-3	chr10	95306459	95306659	+	903.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001330138, intron 2 of 2)	intron (NM_001330138, intron 2 of 2)	17150.0	NM_001330138	12905.0	Mm.473739	NM_009950	ENSMUSG00000045867	Cradd	RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-5142686-4	chr18	5142593	5142793	+	984.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23038.0	NR_153824	102637682.0	Mm.451914	NR_153824		Gm26682	Gm38715	predicted gene, 26682	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133422920-1	chr4	133422820	133423020	+	722.0	f1_c57bl6.idr	3' UTR (NM_001358455, exon 12 of 12)	3' UTR (NM_001358455, exon 12 of 12)	53144.0	NR_039582	100628620.0		NR_039582	ENSMUSG00000092745	Mir5122	mmu-mir-5122|mu-mir-5122	microRNA 5122	ncRNA	1.88323904318099	2.65391466911919	0.944211722620711	2.90786670517412	0.881325234590971	1.7252565705687	0.951230979074683	1.4129962118568	-2.70500733760547	0.0264720267948344	0.217897909377403
Merged-chr16-97961542-4	chr16	97961420	97961620	+	988.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175428, intron 1 of 2)	intron (NM_175428, intron 1 of 2)	1102.0	NM_001081685	114565.0	Mm.474489	NM_175428	ENSMUSG00000046962	Zbtb21	5430437K12Rik|B430213I24Rik|Zfp295|Znf295|mKIAA1227	zinc finger and BTB domain containing 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-34865466-3	chr6	34865346	34865546	+	849.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197986, intron 1 of 1)	intron (NM_197986, intron 1 of 1)	2300.0	NM_197986	68487.0	Mm.248440	NM_197986	ENSMUSG00000057137	Tmem140	1110007F12Rik	transmembrane protein 140	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-113667889-2	chr6	113667789	113667989	+	956.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172161, intron 3 of 12)	intron (NM_172161, intron 3 of 12)	-29161.0	NM_001347356	381801.0	Mm.333322	NM_001033463	ENSMUSG00000056952	Tatdn2	AI646012|mKIAA0218	TatD DNase domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-19012838-5	chr10	19012827	19013027	+	879.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166402)	promoter-TSS (NM_001166402)	-964.0	NM_001166402	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	2.54634839334552	2.86593370425462	2.99219809897079	3.32402883713226	2.15534667942208	3.00882153632991	3.75502856497933	3.10803492673706	0.288749139458596	0.674679463999315	0.99440487726309
Merged-chr18-77468282-1	chr18	77468182	77468382	+	620.0	f1_balb.idr	exon (NM_001164504, exon 4 of 8)	exon (NM_001164504, exon 4 of 8)	96854.0	NM_001164504	225743.0	Mm.23293	NM_001164504	ENSMUSG00000025427	Rnf165	2900024M11Rik|AI427432|Akd2|Ark2c|G630064H08Rik|Gm96	ring finger protein 165	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-55030657-2	chr1	55030505	55030705	+	813.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-3127.0	NM_031179	81898.0	Mm.279736	NM_031179	ENSMUSG00000025982	Sf3b1	155kDa|2810001M05Rik|AA409119|Prp10|SAP155|SF3b155|TA-8|Targ4	splicing factor 3b, subunit 1	protein-coding	0.415278162087159	0.94307154019204	0.431421678528047	1.07095753734997	0.697968570412444	0.441007291135281	0.618719611629675	1.07901166293568	-0.111323501508023	0.94827032183162	1
Merged-chr17-47225506-4	chr17	47225401	47225601	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001097623, intron 3 of 19)	AT_rich|Low_complexity|Low_complexity	-4729.0	NM_172622	224829.0	Mm.260989	NM_172622		Trerf1	9430096I18Rik|AI429294|B830015H24|RAPA|Trep-132|Trep132	transcriptional regulating factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-93235779-4	chr1	93235690	93235890	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172463)	promoter-TSS (NM_172463)	-107.0	NM_172463	208777.0	Mm.271897	NM_172463	ENSMUSG00000047793	Sned1	6720455I24Rik|AI197264|AI642697|D430044C15Rik|SST3|Snep	sushi, nidogen and EGF-like domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-36574772-4	chr5	36574671	36574871	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113362, intron 2 of 14)	intron (NM_001113362, intron 2 of 14)	7626.0	NM_133910	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-93820901-4	chr11	93820823	93821023	+	830.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	64843.0	NM_001013375	217109.0	Mm.379350	NM_001013375	ENSMUSG00000054079	Utp18	6230425C22Rik|6430513M13|Wdr50	UTP18 small subunit processome component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-65631659-2	chr17	65631559	65631759	+	716.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8097.0	NM_153519	213272.0	Mm.255732	NM_153519	ENSMUSG00000050612	Txndc2	AU021712|Sptrx-1|Sptrx1|Trx4	thioredoxin domain containing 2 (spermatozoa)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83852988-2	chr11	83852888	83853088	+	566.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291269)	promoter-TSS (NM_001291269)	28.0	NM_001291269	21410.0	Mm.7226	NM_009330	ENSMUSG00000020679	Hnf1b	HNF-1-beta|HNF-1B|HNF-1Beta|Hnf1beta|LFB3|Tcf-2|Tcf2|vHNF1	HNF1 homeobox B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-22293600-2	chr16	22293500	22293700	+	779.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD-int|LTR|ERVL-MaLR	-1388.0	NR_153764	100043507.0		NR_153764		Gng5-ps	Gm15776	G protein subunit gamma 5, pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19297321-2	chr7	19297221	19297421	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6252.0	NM_001025364	20167.0	Mm.24142	NM_013648	ENSMUSG00000030401	Rtn2	MMS10-P|Ms10p|NSPLI|Nspl1	reticulon 2 (Z-band associated protein)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-93144226-4	chr16	93144106	93144306	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	208983.0	NR_040486	69857.0	Mm.81192	NR_040486	ENSMUSG00000100277	1810053B23Rik	1810008L18Rik|1810056K14Rik	RIKEN cDNA 1810053B23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-36981238-2	chr10	36981138	36981338	+	730.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008229, intron 1 of 13)	Lx9|LINE|L1	6694.0	NM_008229	15182.0	Mm.19806	NM_008229	ENSMUSG00000019777	Hdac2	D10Wsu179e|YAF1|Yy1bp|mRPD3	histone deacetylase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-38441809-2	chr16	38441712	38441912	+	917.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER21C|LTR|ERVL	-8667.0	NM_134102	85031.0	Mm.279805	NM_134102	ENSMUSG00000002847	Pla1a	AA986889|Ps-pla1|Pspla1	phospholipase A1 member A	protein-coding	-0.413270832553205	0.248879758316469	-0.403519686790488	-0.4071766335812	-0.41236239857827	0.260274020124072	-0.402476173372258	-0.406537021983025	0.0394809277679939	0.98817139586833	1
Merged-chr6-38948147-2	chr6	38948047	38948247	+	868.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 1 of 12)	ORR1A2|LTR|ERVL-MaLR	29161.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-31158755-4	chr7	31158668	31158868	+	962.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-3590.0	NR_046062	100038516.0	Mm.387223	NR_046062	ENSMUSG00000100985	Gm10640	EG668322	predicted gene 10640	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-19841319-4	chr13	19841275	19841475	+	856.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17118.0	NM_181754	353346.0	Mm.239268	NM_181754	ENSMUSG00000053101	Gpr141	PGR13	G protein-coupled receptor 141	protein-coding	2.37369044165155	2.91889111451264	2.92539975737677	2.50438338497678	2.3939021820047	3.67511818973828	2.94818764911115	2.85793582112969	0.648690707896071	0.355563478917903	0.853664850644233
Merged-chr2-129546972-4	chr2	129546855	129547055	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-10353.0	NM_177653	228592.0	Mm.452175	NM_177653	ENSMUSG00000043727	F830045P16Rik	Sirpb3	RIKEN cDNA F830045P16 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-88440593-4	chr17	88440514	88440714	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355743)	promoter-TSS (NM_001355743)	-90.0	NM_001355743	14236.0	Mm.112824	NM_180974	ENSMUSG00000034998	Foxn2	3230402J05Rik|6030465J18Rik|Fkh19|Foxn1|HTLF	forkhead box N2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-16291817-2	chr9	16291717	16291917	+	586.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080814, intron 1 of 24)	B4|SINE|B4	86414.0	NM_001080814	270120.0	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT atypical cadherin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-45442613-4	chr13	45442513	45442713	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52871.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-54111343-3	chr3	54111252	54111452	+	661.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44705.0	NM_001253683	22066.0	Mm.10100	NM_016984	ENSMUSG00000027748	Trpc4	CCE1|STRPC4|Trp4|Trrp4	transient receptor potential cation channel, subfamily C, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-4545922-2	chr6	4545822	4546022	+	956.3333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40304.0	NM_007743	12843.0	Mm.277792	NM_007743	ENSMUSG00000029661	Col1a2	AA960264|AI325291|Col1a-2|Cola-2|Cola2|oim	collagen, type I, alpha 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-82724945-4	chr1	82724863	82725063	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310699)	promoter-TSS (NM_001310699)	73.0	NM_001310695	75734.0	Mm.396863	NM_029409	ENSMUSG00000026150	Mff	5230400G24Rik|AI314724	mitochondrial fission factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-40600592-3	chr12	40600495	40600695	+	703.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	154542.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-45970130-1	chr4	45970030	45970230	+	579.0	f1_balb.idr	intron (NM_001290475, intron 1 of 16)	intron (NM_001290475, intron 1 of 16)	-2167.0	NM_146142	100121.0	Mm.275413	NM_146142	ENSMUSG00000035517	Tdrd7	5730495N10Rik|AI447470|PCTAIRE2BP	tudor domain containing 7	protein-coding	1.1612437480006	1.23847352608175	0.579103441043531	0.571624546686452	1.17370313931365	0.590880780264226	1.1963670772189	0.752646248803601	0.121704638346063	0.939657112562936	1
Merged-chr6-5496284-6	chr6	5496195	5496395	+	852.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013743)	promoter-TSS (NM_013743)	-17.0	NM_013743	27273.0	Mm.235547	NM_013743	ENSMUSG00000019577	Pdk4	AV005916	pyruvate dehydrogenase kinase, isoenzyme 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71274112-2	chr8	71274012	71274212	+	562.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001142322, intron 1 of 39)	intron (NM_001142322, intron 1 of 39)	1398.0	NM_001142323	17925.0	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-10314492-3	chr17	10314332	10314532	+	803.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021881, intron 1 of 6)	intron (NM_021881, intron 1 of 6)	4929.0	NM_021881	19317.0	Mm.130694	NM_021881	ENSMUSG00000062078	Qk	1110003F05Rik|1500005P18|QkI|l(17)-1Wis|l17Wis1	quaking	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-129372386-2	chr6	129372286	129372486	+	623.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13117.0	NM_027709	71183.0	Mm.79402	NM_027709	ENSMUSG00000030158	Clec12b	4933425B16Rik	C-type lectin domain family 12, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-109780742-4	chr8	109780638	109780838	+	815.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301211, intron 1 of 22)	intron (NM_001301211, intron 1 of 22)	2155.0	NM_001301211	11765.0	Mm.37210	NM_009677	ENSMUSG00000031731	Ap1g1	AA409002|AU041323|AW551707|Adtg|D8Ertd374e	adaptor protein complex AP-1, gamma 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-107881741-2	chr13	107881641	107881841	+	574.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 2 of 14)	intron (NM_145456, intron 2 of 14)	8323.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98438977-4	chr11	98438856	98439056	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025559)	promoter-TSS (NM_025559)	32.0	NM_025559	103742.0	Mm.259614	NM_025559	ENSMUSG00000002580	Mien1	1810046J19Rik|AI463380|Rdx12	migration and invasion enhancer 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-68876188-2	chr8	68876084	68876284	+	889.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4371.0	NM_008509	16956.0	Mm.1514	NM_008509	ENSMUSG00000015568	Lpl	-	lipoprotein lipase	protein-coding	0.513062806574486	0.510621678870702	0.47875757615348	0.174243476233677	0.521173954477116	0.51776482328245	0.179295615325004	0.174928374720299	-0.482942323084248	0.799008541864693	1
Merged-chr5-122372474-4	chr5	122372370	122372570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026883)	promoter-TSS (NM_026883)	-38.0	NM_024216	68080.0	Mm.266328	NM_024216	ENSMUSG00000029464	Gpn3	A930018B01Rik|Atpbd1c|D5Ertd708e	GPN-loop GTPase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-24684033-2	chr1	24683933	24684133	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310483, intron 1 of 15)	intron (NM_001310483, intron 1 of 15)	5115.0	NM_001310483	68421.0	Mm.336563	NM_026719	ENSMUSG00000073725	Lmbrd1	0910001K20Rik|AV347960	LMBR1 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-94284792-3	chr6	94284693	94284893	+	850.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286784)	promoter-TSS (NM_001286784)	-876.0	NM_001286785	14924.0	Mm.217216	NM_010367	ENSMUSG00000045095	Magi1	AIP3|BAP1|Baiap1|Gukmi1|MAGI1c|Magi-1|TNRC19|WWP3|mKIAA4129	membrane associated guanylate kinase, WW and PDZ domain containing 1	protein-coding	2.40929988547567	1.89917339816004	0.980881257546933	0.956288614067814	1.53006229067145	2.9651103438607	0.987730003874945	1.91211216516739	0.816064815632096	0.508644953143377	0.943622639080647
Merged-chr9-103434381-2	chr9	103434281	103434481	+	624.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001002896, intron 4 of 6)	intron (NM_001002896, intron 4 of 6)	10803.0	NR_040466	100529079.0	Mm.437003	NR_040466	ENSMUSG00000086236	5830418P13Rik	-	RIKEN cDNA 5830418P13 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122851067-2	chr5	122850977	122851177	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030564, intron 1 of 5)	intron (NM_030564, intron 1 of 5)	889.0	NM_030564	80751.0	Mm.388529	NM_030564	ENSMUSG00000029474	Rnf34	AW061037|AW536122|BC004042|C88279|RIFF	ring finger protein 34	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-85189797-4	chr17	85189696	85189896	+	964.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028576, intron 3 of 10)	intron (NM_028576, intron 3 of 10)	99096.0	NM_028576	73582.0	Mm.260753	NM_028576	ENSMUSG00000071037	Camkmt	1700106N22Rik|AI480743|AV099781|CLNMT|CaM KMT	calmodulin-lysine N-methyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-21426459-2	chr5	21426359	21426559	+	895.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177869, intron 1 of 7)	intron (NM_177869, intron 1 of 7)	1556.0	NM_177869	330050.0	Mm.40655	NM_177869	ENSMUSG00000047221	Fam185a	4631428I10|AI847670	family with sequence similarity 185, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167016329-2	chr2	167016229	167016429	+	783.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_153065, intron 1 of 20)	intron (NM_153065, intron 1 of 20)	1016.0	NM_153065	228889.0	Mm.295031	NM_153065	ENSMUSG00000017999	Ddx27	C86129	DEAD (Asp-Glu-Ala-Asp) box polypeptide 27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-49109287-3	chr9	49109178	49109378	+	931.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359460, intron 5 of 12)	intron (NM_001359460, intron 5 of 12)	6499.0	NM_030709	80893.0	Mm.72799	NM_030709	ENSMUSG00000032268	Tmprss5	spinesin	transmembrane protease, serine 5 (spinesin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-3133072-4	chr11	3132956	3133156	+	937.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030207, intron 30 of 32)	intron (NM_030207, intron 30 of 32)	9035.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-29676080-1	chr12	29675980	29676180	+	656.0	f1_c57bl6.idr	non-coding (NR_046080, exon 4 of 4)	non-coding (NR_046080, exon 4 of 4)	10365.0	NR_046080	328075.0	Mm.447832	NR_046080	ENSMUSG00000112663	C630031E19Rik	C630031E19	RIKEN cDNA C630031E19 gene	ncRNA	1.38770583102501	1.62155440155125	0.569477944753057	0.924513208849146	1.31832669911332	0.584425568129001	0.57219247721869	0.561578721936874	-1.61335701200836	0.32984468103377	0.831942889324137
Merged-chr13-47245945-2	chr13	47245845	47246045	+	637.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001170643, exon 8 of 8)	3' UTR (NM_001170643, exon 8 of 8)	51942.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-36731770-2	chr13	36731670	36731870	+	668.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153529, intron 1 of 2)	intron (NM_153529, intron 1 of 2)	2707.0	NM_153529	68404.0	Mm.232930	NM_153529	ENSMUSG00000039114	Nrn1	0710008J23Rik|Cpg15|Nrn	neuritin 1	protein-coding	-2.18138529563533	-2.15523716995652	-2.1631445789866	-2.16963996020037	-2.05513010215571	-2.15352360143315	-2.16135451490766	-2.16847729006863	0.759018020146679	0.829933115115583	1
Merged-chr7-31149970-4	chr7	31149871	31150071	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153431, intron 1 of 18)	intron (NR_153431, intron 1 of 18)	1200.0	NM_027898	52857.0	Mm.27366	NM_027898	ENSMUSG00000001248	Gramd1a	1300003M23Rik|AI415002|AW547240|D7Bwg0611e	GRAM domain containing 1A	protein-coding	2.16343130857648	2.68905971063671	2.47791501035412	3.05605590509984	2.18090507916085	3.11058665641792	2.61999228958879	2.54075579234904	0.02716377361186	0.971304728739048	0.998431161219273
Merged-chr9-20952856-5	chr9	20952712	20952912	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199433)	promoter-TSS (NM_001199433)	167.0	NM_010066	13433.0	Mm.128580	NM_010066	ENSMUSG00000004099	Dnmt1	Cxxc9|Dnmt|Dnmt1o|MCMT|MTase|Met-1|Met1|MommeD2|m.MmuI	DNA methyltransferase (cytosine-5) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-65558405-4	chr17	65558309	65558509	+	941.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17627.0	NM_001289486	381107.0	Mm.141275	NM_001008973	ENSMUSG00000045036	Tmem232	E130009J12Rik|Gm940|Tes13-L|Tes13-S	transmembrane protein 232	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-101903066-2	chr5	101902966	101903166	+	712.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 30 of 66)	intron (NM_172882, intron 30 of 66)	137936.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91645123-2	chr16	91645023	91645223	+	941.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_010256, intron 1 of 21)	B1F2|SINE|Alu	1849.0	NM_010256	14450.0	Mm.4505	NM_010256	ENSMUSG00000022962	Gart	Gaps|Prgs	phosphoribosylglycinamide formyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-40859682-2	chr13	40859582	40859782	+	553.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023887)	promoter-TSS (NM_023887)	-86.0	NM_023887	14538.0	Mm.314757	NM_008105	ENSMUSG00000021360	Gcnt2	5330430K10Rik|IGnT|IGnTA|IGnTB|IGnTC	glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107551612-4	chr9	107551527	107551727	+	869.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001243748)	promoter-TSS (NM_001243748)	72.0	NM_001243748	56289.0	Mm.12091	NM_019713	ENSMUSG00000010067	Rassf1	123F2|AA536941|AU044980|NORE2A|RDA32|REH3P21|Rassf1A|Rassf1B|Rassf1C	Ras association (RalGDS/AF-6) domain family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-40503396-1	chr6	40503296	40503496	+	917.0	f0_balb.idr	Intergenic	Intergenic	9804.0	NM_020502	57253.0	Mm.377132	NM_020502	ENSMUSG00000037140	Tas2r108	T2R108|T2r8|Tas2r4|Tas2r8|mGR08|mt2r8	taste receptor, type 2, member 108	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-104331473-3	chr11	104331404	104331604	+	837.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010838, exon 10 of 10)	3' UTR (NM_010838, exon 10 of 10)	100068.0	NM_001285454	17762.0	Mm.1287	NM_010838	ENSMUSG00000018411	Mapt	AI413597|AW045860|Mtapt|Tau	microtubule-associated protein tau	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-17721814-4	chr10	17721778	17721978	+	859.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1350.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-38762896-2	chr16	38762796	38762996	+	866.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_152434, intron 4 of 6)	intron (NR_152434, intron 4 of 6)	20637.0	NM_001285793	56375.0	Mm.182377	NM_019804	ENSMUSG00000022793	B4galt4	9130402O08Rik|B4galt-IV|b4Gal-T4|beta4Gal-T4|beta4GalT-IV	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-76200442-4	chr16	76200346	76200546	+	929.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	77833.0	NR_040575	78215.0	Mm.243885	NR_040575		4930578N18Rik	-	RIKEN cDNA 4930578N18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106193696-4	chr11	106193579	106193779	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028126)	promoter-TSS (NM_028126)	-76.0	NM_001252449	72149.0	Mm.403722	NM_028126	ENSMUSG00000069631	Strada	2610019A05Rik|6030402H20Rik|AI480680|E130112C09Rik	STE20-related kinase adaptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-47007316-4	chr7	47007178	47007378	+	903.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175318, intron 1 of 5)	intron (NM_175318, intron 1 of 5)	1136.0	NM_175318	101685.0	Mm.155687	NM_175318	ENSMUSG00000049516	Spty2d1	5830435K17Rik|AI852426|P16H6	SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69404100-2	chr11	69404000	69404200	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001017426, exon 11 of 23)	exon (NM_001017426, exon 11 of 23)	-5866.0	NM_025915	67020.0	Mm.390406	NM_025915	ENSMUSG00000045377	Tmem88	2600017H02Rik	transmembrane protein 88	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-24910417-2	chr10	24910317	24910517	+	842.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_105870)	promoter-TSS (NR_105870)	-247.0	NR_105870	102465545.0		NR_105870	ENSMUSG00000099181	Mir6905	Gm27879|mmu-mir-6905	microRNA 6905	ncRNA	2.46354038388178	2.62478128474301	3.04295998133184	2.79200665581598	2.48267787661476	2.50324312634075	3.06494607279411	2.80580771999825	-0.0205681348347325	0.976692768308187	0.998431161219273
Merged-chr12-112840863-4	chr12	112840762	112840962	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13A2|LTR|ERVK	-11341.0	NM_001359234	71963.0	Mm.313185	NM_028023	ENSMUSG00000047832	Cdca4	2410018C03Rik|HEPP|SEI-3	cell division cycle associated 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-91161424-1	chr12	91161324	91161524	+	557.0	f0_balb.idr	intron (NM_181815, intron 20 of 25)	intron (NM_181815, intron 20 of 25)	51195.0	NR_030473	735273.0		NR_030473	ENSMUSG00000076118	Mir669c	Mirn669c|Mirn669c-1	microRNA 669c	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70582735-1	chr8	70582635	70582835	+	628.0	f1_balb.idr	intron (NM_007924, intron 5 of 11)	intron (NM_007924, intron 5 of 11)	-11746.0	NM_023627	71780.0	Mm.29357	NM_023627	ENSMUSG00000019139	Isyna1	1300017C10Rik|AU018670	myo-inositol 1-phosphate synthase A1	protein-coding	1.03169166071559	0.597705103860591	0.58388944737175	0.956186398716499	0.747245629853103	0.84509318456904	2.00484103473533	1.11140070011047	1.99593286286173	0.173125695760082	0.640902961210202
Merged-chr10-78591707-2	chr10	78591607	78591807	+	706.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_027875, intron 1 of 7)	intron (NM_027875, intron 1 of 7)	257.0	NM_027875	71709.0	Mm.86439	NM_027875	ENSMUSG00000032714	Syde1	1200008N06Rik|BB043000|mSYD1A	synapse defective 1, Rho GTPase, homolog 1 (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-75092729-4	chr8	75092515	75092715	+	727.212524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-1003.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	-0.323455984133657	-0.261866978439845	-0.455621552534249	-0.458532581355459	-0.319570903117422	-0.450986903791415	0.21346497001621	-0.458024421896498	1.69882897555051	0.484790592860521	1
Merged-chr7-81274493-3	chr7	81274389	81274589	+	739.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008803, intron 1 of 21)	L1M3|LINE|L1	60685.0	NM_008803	18584.0	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52249918-2	chr13	52249818	52250018	+	740.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	153177.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-79751840-3	chr12	79751776	79751976	+	780.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 8 of 10)	intron (NM_009014, intron 8 of 10)	172857.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-45955225-4	chr11	45955132	45955332	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290737)	promoter-TSS (NM_001290737)	-44.0	NM_001290737	66628.0	Mm.269083	NM_001080969	ENSMUSG00000011254	Thg1l	-	tRNA-histidine guanylyltransferase 1-like (S. cerevisiae)	protein-coding	5.95579815200531	5.35758356744137	5.56899228585134	5.0297008896026	5.70473602718057	6.0150440130988	5.23351058889668	5.97179225012486	0.266926191577804	0.36366302151406	0.858903333095609
Merged-chr17-45430605-4	chr17	45430506	45430706	+	824.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152810, intron 1 of 15)	RLTR13B1|LTR|ERVK	3101.0	NM_152810	71702.0	Mm.28270	NM_152810	ENSMUSG00000023932	Cdc5l	1200002I02Rik|AA408004|PCDC5RP	cell division cycle 5-like (S. pombe)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5571350-2	chr19	5571250	5571450	+	580.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001033448)	TTS (NM_001033448)	3326.0	NM_001033448	381201.0	Mm.441906	NM_001033448	ENSMUSG00000049562	Ap5b1	Gm962|beta-5	adaptor-related protein complex 5, beta 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-63971264-3	chr5	63971169	63971369	+	848.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2372.0	NM_145923	100532.0	Mm.243632	NM_145923	ENSMUSG00000047881	Rell1	AA536743	RELT-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-107472222-2	chr3	107472122	107472322	+	553.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172271, intron 10 of 11)	intron (NM_172271, intron 10 of 11)	-13324.0	NM_001356447	99738.0	Mm.101976	NM_145922	ENSMUSG00000027895	Kcnc4	AI850292|KSHIIIC|Kcr2-4|Kv3.4	potassium voltage gated channel, Shaw-related subfamily, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-68161634-2	chr18	68161534	68161734	+	667.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172631, intron 3 of 5)	intron (NM_172631, intron 3 of 5)	-66312.0	NM_001357444	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-73288577-2	chr12	73288477	73288677	+	993.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037717, intron 2 of 15)	intron (NM_001037717, intron 2 of 15)	1729.0	NM_001037717	625098.0	Mm.32075	NM_001037717	ENSMUSG00000044712	Slc38a6	AW322671|EG625098	solute carrier family 38, member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-33189228-6	chr4	33189161	33189361	+	742.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001034867, exon 1 of 7)	exon (NM_001034867, exon 1 of 7)	476.0	NM_001034867	242377.0	Mm.372465	NM_001034867	ENSMUSG00000054659	Pm20d2	Acy1l2|Gm424	peptidase M20 domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-73009044-4	chr17	73008961	73009161	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	90756.0	NM_029999	77889.0	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	3.23456304204513	3.83233550770096	1.52425757621447	3.82317361612174	2.53181287164269	3.50461038441534	1.53854028814181	3.62380739950912	-0.5096923348358	0.713483559961504	0.998431161219273
Merged-chr5-137746540-4	chr5	137746493	137746693	+	921.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023910, intron 1 of 4)	intron (NM_023910, intron 1 of 4)	624.0	NM_029805	78829.0	Mm.286399	NM_023910	ENSMUSG00000029723	Tsc22d4	0610009M14Rik|1700023B23Rik|AI415410|Thg-1pit|Tilz2	TSC22 domain family, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101538722-4	chr7	101538630	101538830	+	979.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17072.0	NM_007490	11871.0	Mm.439746	NM_007490	ENSMUSG00000092517	Art2a-ps	ARTC2|Art2a|Ly92a|Rt-6|Rt6|Rt6-1	ADP-ribosyltransferase 2a, pseudogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-138193925-3	chr5	138193825	138194025	+	846.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177878)	promoter-TSS (NM_177878)	-389.0	NM_177878	330216.0	Mm.19719	NM_177878	ENSMUSG00000049285	Mblac1	-	metallo-beta-lactamase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-137807680-3	chr4	137807529	137807729	+	912.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1O|LTR|ERVL-MaLR	-11245.0	NM_007431	11647.0	Mm.288186	NM_007431	ENSMUSG00000028766	Alpl	ALP|APTNAP|Akp-2|Akp2|TNAP|TNSALP	alkaline phosphatase, liver/bone/kidney	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-104285953-2	chr9	104285853	104286053	+	953.416626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-23023.0	NM_001163026	235567.0	Mm.217256	NM_001163026	ENSMUSG00000032560	Dnajc13	D030002L11Rik|Gm1124|RME-8|Rme8|mKIAA0678	DnaJ heat shock protein family (Hsp40) member C13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-103680090-3	chr14	103679974	103680174	+	738.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198014, intron 2 of 6)	intron (NM_198014, intron 2 of 6)	19358.0	NR_045148	70898.0	Mm.27548	NR_045148	ENSMUSG00000089707	Slain1os	4921525B02Rik	SLAIN motif family, member 1, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-170170434-2	chr1	170170334	170170534	+	771.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133806, intron 1 of 10)	intron (NM_133806, intron 1 of 10)	4530.0	NM_133806	107652.0	Mm.27969	NM_133806	ENSMUSG00000026670	Uap1	AA420407|AA437972|AGX-1|AGX-2|AGX1|AgX|ESTM38|SPAG2	UDP-N-acetylglucosamine pyrophosphorylase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-67256066-1	chr17	67255966	67256166	+	771.0	f1_balb.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	98393.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	0.14347908558363	0.655080243821882	0.156056168470627	0.151332295157997	0.798509656327714	0.360915815112545	0.621465211241648	0.152157886254583	1.46943370463843	0.468311759894957	1
Merged-chr1-153480573-4	chr1	153480478	153480678	+	774.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007842, intron 4 of 27)	B3|SINE|B2	7082.0	NM_007842	13211.0	Mm.20000	NM_007842	ENSMUSG00000042699	Dhx9	AI326842|Ddx9|HEL-5|NDHII|RHA|mHEL-5	DEAH (Asp-Glu-Ala-His) box polypeptide 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-165187498-5	chr1	165187424	165187624	+	819.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151712, intron 3 of 8)	intron (NR_151712, intron 3 of 8)	6909.0	NM_145512	108735.0	Mm.288369	NM_145512	ENSMUSG00000040848	Sft2d2	2010005O13Rik|AI506168|AW561909|cI-45	SFT2 domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-123170547-7	chr7	123170430	123170630	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_144925, exon 6 of 24)	exon (NM_144925, exon 6 of 24)	-44336.0	NM_146198	233836.0	Mm.211838	NM_146198	ENSMUSG00000030769	Slc5a11	2010013B02Rik|Kst1|RKST2|SMIT2|Slc5a10	solute carrier family 5 (sodium/glucose cotransporter), member 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-127780287-2	chr8	127780187	127780387	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	480635.0	NM_001013580	93742.0	Mm.299254	NM_033620	ENSMUSG00000025812	Pard3	AA960621|AI256638|Asip|D8Ertd580e|Par-3|Par3|Pard-3|Pard3a|Phip	par-3 family cell polarity regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-103818539-2	chr5	103818439	103818639	+	609.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133919, intron 6 of 19)	intron (NM_133919, intron 6 of 19)	63966.0	NM_001080798	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-5161645-2	chr10	5161545	5161745	+	569.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001079686, intron 8 of 54)	intron (NM_001079686, intron 8 of 54)	33062.0	NM_001079686	64009.0	Mm.331626	NM_022027	ENSMUSG00000096054	Syne1	8B|A330049M09Rik|BE692247|C130039F11Rik|CPG2|KASH1|Myne1|mKIAA1756|myne-1	spectrin repeat containing, nuclear envelope 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-21748448-2	chr14	21748348	21748548	+	802.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001007268, exon 1 of 8)	exon (NM_001007268, exon 1 of 8)	174.0	NM_001007268	27389.0	Mm.390674	NM_013849	ENSMUSG00000021768	Dusp13	DUSP13A|DUSP13B|Gm1203|LMW-DSP6|MDSP|TMDP|TS-DSP6	dual specificity phosphatase 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-32342928-4	chr11	32342836	32343036	+	856.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4875.0	NM_177364	268396.0	Mm.227616	NM_177364	ENSMUSG00000040711	Sh3pxd2b	G431001E03Rik|TSK4|fad49	SH3 and PX domains 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-72449608-3	chr9	72449502	72449702	+	991.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008613, intron 7 of 9)	intron (NM_008613, intron 7 of 9)	11073.0	NM_008613	17427.0	Mm.387671	NM_008613	ENSMUSG00000032221	Mns1	AW546487	meiosis-specific nuclear structural protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-69906320-2	chr8	69906220	69906420	+	863.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_145596)	TTS (NM_145596)	-3762.0	NM_023312	67184.0	Mm.21162	NM_023312	ENSMUSG00000036199	Ndufa13	2700054G14Rik|AU022060|CDA016|CGI-39|GRIM-19|Grim19	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-11253532-4	chr16	11253443	11253643	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_035466)	TTS (NR_035466)	782.0	NM_001130008	14852.0	Mm.325827	NM_146066	ENSMUSG00000062203	Gspt1	AI314175|AI326449|AV307676|C79774|G1st|Gst-1	G1 to S phase transition 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-52973476-1	chr6	52973376	52973576	+	551.0	f0_balb.idr	intron (NM_173406, intron 1 of 4)	intron (NM_173406, intron 1 of 4)	-63856.0	NM_001168277	231986.0	Mm.386865	NM_173406	ENSMUSG00000063568	Jazf1	AI591476|C820002C15|Jaz1|Tip27	JAZF zinc finger 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-131207683-1	chr2	131207583	131207783	+	732.0	f1_c57bl6.idr	Intergenic	Intergenic	-2677.0	NM_001291032	69596.0	Mm.2937	NM_027129	ENSMUSG00000068264	Ap5s1	0610038L13Rik|2310035K24Rik|AW060727|sigma5	adaptor-related protein 5 complex, sigma 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165874526-2	chr2	165874416	165874616	+	760.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252587, intron 2 of 11)	intron (NM_001252587, intron 2 of 11)	3921.0	NM_001291158	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	3.53689855773239	3.94698841083846	3.99727088388173	3.18202169770859	2.71990426894975	3.68645894288604	3.56717274179237	2.8676500190683	-0.669154352313548	0.239524201887966	0.736245441738298
Merged-chr6-145865539-4	chr6	145865414	145865614	+	981.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024469)	promoter-TSS (NM_024469)	-94.0	NM_001271768	79362.0	Mm.154529	NM_024469	ENSMUSG00000030256	Bhlhe41	6430520M22Rik|Bhlhb2l|Bhlhb3|DEC2|Sharp1	basic helix-loop-helix family, member e41	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-75979326-1	chr5	75979226	75979426	+	746.25	f0_balb.idr	promoter-TSS (NM_010612)	promoter-TSS (NM_010612)	-898.0	NM_010612	16542.0	Mm.285	NM_010612	ENSMUSG00000062960	Kdr	6130401C07|Flk-1|Flk1|Krd-1|Ly73|VEGFR-2|VEGFR2|orv|sVEGFR-2	kinase insert domain protein receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-55021405-2	chr11	55021305	55021505	+	546.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_138556, intron 2 of 24)	intron (NR_138556, intron 2 of 24)	12066.0	NR_138556	11749.0	Mm.265347	NM_013472	ENSMUSG00000018340	Anxa6	AW107198|Anx6|AnxVI|Cabm|Camb	annexin A6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-59237346-2	chr10	59237246	59237446	+	850.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15424.0	NM_172939	268301.0	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-105444528-2	chr13	105444428	105444628	+	771.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_008308, exon 1 of 1)	exon (NM_008308, exon 1 of 1)	835.0	NM_008308	15550.0	Mm.4716	NM_008308	ENSMUSG00000021721	Htr1a	Gpcr18	5-hydroxytryptamine (serotonin) receptor 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-46111031-4	chr17	46110921	46111121	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026768)	promoter-TSS (NM_026768)	17.0	NM_026768	68565.0	Mm.287443	NM_026768	ENSMUSG00000023967	Mrps18a	1110004O20Rik|C79712	mitochondrial ribosomal protein S18A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-73618422-4	chr7	73618309	73618509	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-60014.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-16139269-2	chr1	16139169	16139369	+	831.400024	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33387.0	NM_133832	98711.0	Mm.274376	NM_133832	ENSMUSG00000025921	Rdh10	3110069K09Rik|4921506A21Rik|AI875664|AW549993|D1Ertd762e|m366Asp	retinol dehydrogenase 10 (all-trans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-4572571-2	chr7	4572471	4572671	+	731.299988	f1_balb.idr|f1_c57bl6.idr	intron (NM_207270, intron 7 of 19)	intron (NM_207270, intron 7 of 19)	-25030.0	NM_001360422	53420.0	Mm.358663	NM_016908	ENSMUSG00000004961	Syt5	SytV	synaptotagmin V	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111696522-4	chr12	111696416	111696616	+	983.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16437.0	NM_001324481	70369.0	Mm.44239	NM_027404	ENSMUSG00000049792	Bag5	1600025G07Rik|4930405J06Rik|Bag-5	BCL2-associated athanogene 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-48676130-3	chr6	48676039	48676239	+	747.277771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_174960)	promoter-TSS (NM_174960)	4.0	NM_174960	317758.0	Mm.116971	NM_174960	ENSMUSG00000051124	Gimap9	A630002K24|BB145400	GTPase, IMAP family member 9	protein-coding	-0.60715324086056	0.146905222427449	-0.415344365055738	-0.602200903491284	-0.606416177578915	-0.594491241026573	-0.59836893838129	-0.428651159220911	-2.49510908434688	0.340717190313366	1
Merged-chr10-55840031-2	chr10	55839931	55840131	+	562.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-266886.0	NM_001163833	73390.0	Mm.181475	NM_133751	ENSMUSG00000047669	Msl3l2	1700060H10Rik	MSL3 like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107644788-4	chr9	107644678	107644878	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9436.0	NM_008138	14678.0	Mm.196464	NM_008138	ENSMUSG00000032562	Gnai2	C76432|Galphai2|Gia|Gnai-2	guanine nucleotide binding protein (G protein), alpha inhibiting 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90570476-2	chr2	90570376	90570576	+	675.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	10171.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-32332197-4	chr16	32332075	32332275	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177633)	promoter-TSS (NM_177633)	-77.0	NM_177633	224111.0	Mm.31275	NM_177633	ENSMUSG00000053774	Ubxn7	A630090P18|AI196514|Ubxd7|mKIAA0794	UBX domain protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-169791769-2	chr2	169791666	169791866	+	582.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_080455, intron 1 of 1)	intron (NM_080455, intron 1 of 1)	158120.0	NM_080455	228911.0	Mm.315789	NM_080455	ENSMUSG00000047907	Tshz2	2900073F20Rik|B830045G17|Mtsh2|Sdccag33l|Tsh2|Zfp218|mKIAA4248|teashirt2	teashirt zinc finger family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-25713910-2	chr15	25713810	25714010	+	651.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_019472, intron 3 of 40)	CpG	-39296.0	NM_001353142	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-75794368-4	chr13	75794259	75794459	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45526.0	NM_001360151	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	4.43629426486692	4.979368720477	4.91006204051775	4.93519995581217	5.6481666915362	4.21674901475215	4.77396108364858	5.12427074540612	0.272877559754353	0.466434976405143	0.922971992343415
Merged-chr19-34473224-3	chr19	34473117	34473317	+	828.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009890)	TTS (NM_009890)	1918.0	NM_009890	12642.0	Mm.30824	NM_009890	ENSMUSG00000050370	Ch25h	AI462618|m25OH	cholesterol 25-hydroxylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27780822-1	chr2	27780722	27780922	+	546.0	f1_balb.idr	Intergenic	Intergenic	70239.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-5708236-3	chr2	5708174	5708374	+	741.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290374, intron 1 of 9)	intron (NM_001290374, intron 1 of 9)	6488.0	NM_001290374	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	2.37586761603154	2.2373689031269	0.875922257227006	2.32237315030885	1.54627393254632	0.906764822179961	0.881594673264401	0.859224156333216	-3.11538605392408	0.0226285162347441	0.195234816785476
Merged-chr11-46106050-4	chr11	46105940	46106140	+	920.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291890, intron 5 of 22)	intron (NM_001291890, intron 5 of 22)	3770.0	NR_106177	102465996.0		NR_106177	ENSMUSG00000098942	Mir8100	Gm27638|mmu-mir-8100	microRNA 8100	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28277361-2	chr7	28277261	28277461	+	639.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177427)	promoter-TSS (NM_001177427)	-345.0	NM_001177427	434156.0	Mm.118535	NM_001177427	ENSMUSG00000070705	Eid2b	3010005C08Rik	EP300 interacting inhibitor of differentiation 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-5511968-4	chr13	5511887	5512087	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	346105.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-67819329-2	chr5	67819229	67819429	+	596.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038999, intron 1 of 36)	intron (NM_001038999, intron 1 of 36)	28102.0	NM_009727	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	-1.84446540621454	-1.66703209084435	-1.82297003008319	-1.83062437091832	-1.84230234211872	-1.6650127732569	-1.82086056797065	-1.82925424756847	0.037684011990387	0.991491645451152	1
Merged-chr11-110095825-3	chr11	110095754	110095954	+	872.455566	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153145)	promoter-TSS (NM_153145)	83.0	NM_153145	217258.0	Mm.344148	NM_153145	ENSMUSG00000041828	Abca8a	-	ATP-binding cassette, sub-family A (ABC1), member 8a	protein-coding	1.65234453273405	3.51688879087476	2.90366918608649	1.74770394132851	3.09999967445171	3.22622408977943	3.28318950917687	2.72828473589711	0.706560732391653	0.370621631827201	0.863727598865104
Merged-chr10-41473403-2	chr10	41473303	41473503	+	958.875	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-2911.0	NM_001164433	171580.0	Mm.290431	NM_138315	ENSMUSG00000019823	Mical1	MICAL|MICAL-1|Nical	microtubule associated monooxygenase, calponin and LIM domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95951676-2	chr3	95951576	95951776	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22419.0	NM_023210	66471.0	Mm.218657	NM_023210	ENSMUSG00000015749	Anp32e	2810018A15Rik|AI047746|AI326868|CPD1|LANP-L|LANPL|mLANP-L	acidic (leucine-rich) nuclear phosphoprotein 32 family, member E	protein-coding	2.25443810038972	2.42125060479691	2.18531495750608	1.765687109219	1.47015121322676	3.24531934686194	3.54975304975621	1.77565800213045	1.25160328188659	0.165858441943871	0.631187735036117
Merged-chr16-29452776-1	chr16	29452676	29452876	+	575.0	f1_c57bl6.idr	intron (NM_001164613, intron 13 of 21)	intron (NM_001164613, intron 13 of 21)	-74044.0	NM_175650	268878.0	Mm.9823	NM_175650	ENSMUSG00000048939	Atp13a5	C630015F21Rik	ATPase type 13A5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-68966097-4	chr11	68965978	68966178	+	872.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-2053.0	NM_028048	71998.0	Mm.298622	NM_028048	ENSMUSG00000018740	Slc25a35	1810012H11Rik	solute carrier family 25, member 35	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-64748439-3	chr16	64748329	64748529	+	661.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22510.0	NM_026273	67609.0	Mm.212157	NM_026273	ENSMUSG00000059920	4930453N24Rik	AI649104|din	RIKEN cDNA 4930453N24 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-53547762-3	chr19	53547675	53547875	+	836.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18457.0	NM_001085390	240672.0	Mm.482424	NM_001085390	ENSMUSG00000034765	Dusp5	Gm337	dual specificity phosphatase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-43998448-2	chr10	43998348	43998548	+	678.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_172393, exon 2 of 20)	exon (NM_172393, exon 2 of 20)	6398.0	NM_172393	11630.0	Mm.292082	NM_172393	ENSMUSG00000019866	Crybg1	AI462491|AI463325|Aim1	crystallin beta-gamma domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-84276537-3	chr12	84276450	84276650	+	707.599976	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6B|LTR|ERVK	-8746.0	NM_029880	77219.0	Mm.246127	NM_029880	ENSMUSG00000072946	Ptgr2	1810016I24Rik|9130222H03Rik|9630002F03Rik|AI838763|B830026H24Rik|PGR-2|PRG-2|Zadh1	prostaglandin reductase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-57300210-2	chr17	57300112	57300312	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163816, intron 9 of 25)	B2_Mm1a|SINE|B2	21112.0	NM_001163815	22324.0	Mm.248172	NM_011691	ENSMUSG00000034116	Vav1	Vav|vav-T	vav 1 oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-107464344-2	chr11	107464244	107464444	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 1 of 9)	intron (NR_153311, intron 1 of 9)	6376.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-112268651-2	chr2	112268551	112268751	+	605.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133649, intron 1 of 24)	L1_Mus3|LINE|L1	2337.0	NM_133649	107723.0	Mm.491155	NM_133648	ENSMUSG00000027130	Slc12a6	9530023I19Rik|KCC3|gaxp	solute carrier family 12, member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-83724011-2	chr8	83723911	83724111	+	701.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_106188)	promoter-TSS (NR_106188)	-27.0	NR_106188	102465897.0		NR_106188	ENSMUSG00000098465	Mir1668	Gm27590|mmu-mir-1668	microRNA 1668	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-114925706-1	chr5	114925606	114925806	+	722.0	f1_balb.idr	intron (NM_001359946, intron 1 of 4)	intron (NM_001359946, intron 1 of 4)	2466.0	NM_001359945	231655.0	Mm.95479	NM_145209	ENSMUSG00000041827	Oasl1	7530414C13Rik|oasl9	2'-5' oligoadenylate synthetase-like 1	protein-coding	0.558127141641886	0.622672524367586	1.9541746708947	0.586235390527959	0.562412930891735	1.48976620468555	2.20652947956728	0.840075354545316	0.997230252561234	0.52297710905557	0.947836760490745
Merged-chr4-33247777-4	chr4	33247652	33247852	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033225, intron 1 of 1)	CpG	1035.0	NM_001033225	108767.0	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-132251554-2	chr2	132251454	132251654	+	665.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011045, intron 3 of 5)	intron (NM_011045, intron 3 of 5)	1626.0	NM_011045	18538.0	Mm.7141	NM_011045	ENSMUSG00000027342	Pcna	-	proliferating cell nuclear antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-122208540-4	chr7	122208462	122208662	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10934.0	NM_027363	70261.0	Mm.96997	NM_027363	ENSMUSG00000030865	Chp2	2010110P09Rik|Cbhp2	calcineurin-like EF hand protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-24454113-2	chr5	24454013	24454213	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359881, intron 1 of 15)	intron (NM_001359881, intron 1 of 15)	1936.0	NM_139153	213990.0	Mm.250703	NM_139153	ENSMUSG00000023353	Agap3	AGAP-3|AV028425|Centg3|Crag|Crag.|MRIP-1|cnt-g3	ArfGAP with GTPase domain, ankyrin repeat and PH domain 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-75847097-2	chr13	75846997	75847197	+	953.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_053108, intron 1 of 2)	intron (NM_053108, intron 1 of 2)	7211.0	NM_053108	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	0.678644725060787	1.43412518971501	1.59396248136131	1.62870292606109	0.861492441737616	0.723816945971594	0.710273812727344	1.3365968851098	-1.87608576743619	0.209840948190523	0.69949048545273
Merged-chr12-102376665-2	chr12	102376565	102376765	+	953.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_177620, intron 7 of 9)	intron (NM_177620, intron 7 of 9)	63148.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-132466098-1	chr7	132465998	132466198	+	574.0	f0_balb.idr	Intergenic	Intergenic	110300.0	NM_016978	18242.0	Mm.13694	NM_016978	ENSMUSG00000030934	Oat	AI194874|rhg	ornithine aminotransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-45123200-2	chr2	45123100	45123300	+	706.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-5758.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-106379850-2	chr1	106379750	106379950	+	553.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133821, intron 13 of 16)	B4|SINE|B4	166781.0	NR_106164	102466254.0		NR_106164	ENSMUSG00000098344	Mir3473f	Gm27846|mmu-mir-3473f	microRNA 3473f	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-32395587-4	chr6	32395479	32395679	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175750, intron 3 of 31)	intron (NM_175750, intron 3 of 31)	-115562.0	NR_040277	319849.0	Mm.440860	NR_040277	ENSMUSG00000086763	Plxna4os1	B230378P21Rik	plexin A4, opposite strand 1	ncRNA	3.03350837753974	3.97883531542909	3.71777163642481	3.61601915197399	4.00472621660649	3.09283342583496	4.05852588929	2.60141546907528	-0.0553525663852025	0.924547773584453	0.998431161219273
Merged-chr1-135313793-4	chr1	135313692	135313892	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360858)	promoter-TSS (NM_001360858)	-55.0	NM_001360858	21854.0	Mm.2368	NM_011590	ENSMUSG00000062580	Timm17a	Tim17a|mTim17a	translocase of inner mitochondrial membrane 17a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-80312214-2	chr4	80312114	80312314	+	905.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-521999.0	NM_031202	22178.0	Mm.30438	NM_031202	ENSMUSG00000005994	Tyrp1	Oca3|TRP-1|TRP1|Tyrp|b|brown|isa	tyrosinase-related protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27203607-5	chr17	27203434	27203634	+	897.2666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146075, intron 1 of 8)	intron (NM_146075, intron 1 of 8)	904.0	NM_146075	224640.0	Mm.29689	NM_146075	ENSMUSG00000044857	Lemd2	BC026588|Lem2|NET25	LEM domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85712824-4	chr12	85712683	85712883	+	984.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26063.0	NM_016767	53314.0	Mm.6672	NM_016767	ENSMUSG00000034266	Batf	B-ATF|SFA-2	basic leucine zipper transcription factor, ATF-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-149961656-4	chr1	149961573	149961773	+	986.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008869)	promoter-TSS (NM_008869)	-383.0	NM_008869	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-59575726-4	chr4	59575623	59575823	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-5840.0	NM_001301367	72479.0	Mm.272905	NM_024255	ENSMUSG00000028383	Hsdl2	2610207I16Rik	hydroxysteroid dehydrogenase like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-108627585-4	chr12	108627473	108627673	+	958.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163395, intron 1 of 12)	intron (NM_001163395, intron 1 of 12)	-8180.0	NM_001163396	14026.0	Mm.238841	NM_007965	ENSMUSG00000021262	Evl	AI528774|b2b2600Clo	Ena-vasodilator stimulated phosphoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-57998558-2	chr9	57998458	57998658	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346787, intron 1 of 9)	intron (NM_001346787, intron 1 of 9)	534.0	NM_001346787	13070.0	Mm.302865	NM_019779	ENSMUSG00000032323	Cyp11a1	Cyp11a|Cypxia1|D9Ertd411e|P450scc|Scc|cscc	cytochrome P450, family 11, subfamily a, polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-34373211-4	chr2	34373072	34373272	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1127.0	NM_016768	18516.0	Mm.239941	NM_016768	ENSMUSG00000038718	Pbx3	-	pre B cell leukemia homeobox 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-111997210-4	chr10	111997120	111997320	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028608)	promoter-TSS (NM_028608)	44.0	NM_028608	73690.0	Mm.173790	NM_028608	ENSMUSG00000056888	Glipr1	2410114O14Rik|RTVP-1|RTVP1|mRTVP-1	GLI pathogenesis-related 1 (glioma)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-116461048-3	chr6	116460940	116461140	+	800.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_009662, exon 1 of 14)	5' UTR (NM_009662, exon 1 of 14)	138.0	NM_009662	11689.0	Mm.41072	NM_009662	ENSMUSG00000025701	Alox5	5-LO|5-LOX|5LO|5LX|AI850497|F730011J02	arachidonate 5-lipoxygenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-94500330-4	chr6	94500216	94500416	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026255)	promoter-TSS (NM_026255)	2.0	NM_026255	67582.0	Mm.280725	NM_026255	ENSMUSG00000045100	Slc25a26	4930433D19Rik|4933433F13Rik|AW557176|D6Bwg0781e|Slc25a6	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-81566752-4	chr18	81566663	81566863	+	724.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	425317.0	NR_039589	100628596.0		NR_039589	ENSMUSG00000093036	Mir5127	mmu-mir-5127|mu-mir-5127	microRNA 5127	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125411234-4	chr6	125411125	125411325	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30721.0	NM_198604	213522.0	Mm.333396	NM_198604	ENSMUSG00000038167	Plekhg6	BC026778|Gm155	pleckstrin homology domain containing, family G (with RhoGef domain) member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-69317754-2	chr3	69317654	69317854	+	868.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_178726, exon 1 of 4)	exon (NM_178726, exon 1 of 4)	836.0	NM_178726	242083.0	Mm.40577	NM_178726	ENSMUSG00000027784	Ppm1l	3222401G13|5930404J21Rik|AI481720|AW045850|PP2C|PP2Cepsilon|Pp2ce|Ppp2ce|mKIAA4175	protein phosphatase 1 (formerly 2C)-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-177408898-2	chr1	177408798	177408998	+	710.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33453.0	NM_001355099	30928.0	Mm.330700	NM_013915	ENSMUSG00000063659	Zbtb18	RP58|Zfp238|Znf238.|zfp-238	zinc finger and BTB domain containing 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-43021787-4	chr10	43021708	43021908	+	906.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175407, exon 6 of 7)	exon (NM_175407, exon 6 of 7)	-30646.0	NR_153349	327749.0	Mm.428887	NR_153349		Gm5079	C230040G06	predicted gene 5079	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-119447763-2	chr8	119447663	119447863	+	787.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_054095, intron 1 of 12)	CpG	1044.0	NM_054095	117148.0	Mm.356184	NM_054095	ENSMUSG00000031837	Necab2	Efcbp2	N-terminal EF-hand calcium binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-83715186-4	chr13	83715049	83715249	+	855.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6232.0	NR_152244	320203.0	Mm.245636	NM_177100	ENSMUSG00000050334	C130071C03Rik	2810449C10Rik|ECONEXIN|EyeLinc1|Visc-1	RIKEN cDNA C130071C03 gene	ncRNA	-1.06997269762433	-1.30473905204845	-1.3145270772132	-1.32256725251374	-1.06385251204029	-1.30261794616352	-1.3123112828633	-1.32112806497905	0.0394047164033882	0.991001358494878	1
Merged-chr17-25129209-1	chr17	25129109	25129309	+	907.0	f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-4182.0	NM_011930	26373.0	Mm.270587	NM_011930	ENSMUSG00000036636	Clcn7	ClC-7|D17Wsu51e	chloride channel, voltage-sensitive 7	protein-coding	1.17580436102671	2.83965208123533	1.72104407027114	3.21207403778264	1.57698695187525	1.04370257667327	1.00853048424722	1.83691785183357	-2.56348174460988	0.0224566392267344	0.194117260405158
Merged-chr14-11328336-3	chr14	11328226	11328426	+	828.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	45849.0	NR_105811	102466641.0		NR_105811	ENSMUSG00000099218	Mir5124b	Gm27681|mmu-mir-5124b	microRNA 5124b	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84976584-4	chr8	84976505	84976705	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008416)	TTS (NM_008416)	2143.0	NM_008416	16477.0	Mm.1167	NM_008416	ENSMUSG00000052837	Junb	-	jun B proto-oncogene	protein-coding	5.89109228946833	5.60523174705239	6.45326968801802	6.15710542884057	5.91303744652685	6.1998867820525	6.0550912788907	6.4813920074813	0.124565263946959	0.615221533299311	0.977344463026735
Merged-chr15-101278833-3	chr15	101278715	101278915	+	751.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5486.0	NM_026566	68118.0	Mm.482360	NM_026566	ENSMUSG00000037204	Atg101	9430023L20Rik|AA407441|AU022967	autophagy related 101	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-125859262-2	chr8	125859162	125859362	+	881.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175561, intron 12 of 33)	intron (NM_175561, intron 12 of 33)	-38652.0	NR_155422	102632990.0	Mm.429446	NR_155422		A730098A19Rik	-	RIKEN cDNA A730098A19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-57029821-3	chr18	57029735	57029935	+	983.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54456.0	NM_029909	77422.0	Mm.256874	NM_029909	ENSMUSG00000024592	C330018D20Rik	AU018666	RIKEN cDNA C330018D20 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-115977828-2	chr6	115977728	115977928	+	705.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026376, intron 5 of 35)	intron (NM_026376, intron 5 of 35)	17177.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101095816-2	chr11	101095716	101095916	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008949)	promoter-TSS (NM_008949)	-381.0	NM_008949	19183.0	Mm.18344	NM_008949	ENSMUSG00000019303	Psmc3ip	C79099|GT198|HOP2|Tbpip	proteasome (prosome, macropain) 26S subunit, ATPase 3, interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-50117461-1	chr17	50117361	50117561	+	1000.0	f1_balb.idr	intron (NM_181397, intron 2 of 9)	intron (NM_181397, intron 2 of 9)	73036.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	-1.18378942727406	-1.15669478905697	-0.457913181653105	-1.17806440097404	-1.18323730008524	-1.15415234459186	-1.16577117532349	-1.17633933179771	-2.81844548480871	0.412768592413622	1
Merged-chr6-59022834-4	chr6	59022738	59022938	+	889.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153574, intron 1 of 17)	intron (NM_153574, intron 1 of 17)	1664.0	NM_153574	58909.0	Mm.28813	NM_153574	ENSMUSG00000037709	Fam13a	AI462012|D430015B01Rik|FAM13A1|Precm1	family with sequence similarity 13, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75536144-2	chr11	75536044	75536244	+	885.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199284, intron 2 of 13)	intron (NM_001199284, intron 2 of 13)	4032.0	NM_001199283	215113.0	Mm.11186	NM_173388	ENSMUSG00000038178	Slc43a2	7630402D21Rik|BC042513|Lat4	solute carrier family 43, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-63922417-4	chr11	63922322	63922522	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018805)	promoter-TSS (NM_018805)	-138.0	NM_018805	54710.0	Mm.274426	NM_018805	ENSMUSG00000070407	Hs3st3b1	3-OST-3B|3OST3B1|3Ost3b|AU041882|AW536289|Hs3st3b|m3-OST-3B	heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-178885812-2	chr2	178885712	178885912	+	570.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	455297.0	NM_198656	381409.0	Mm.330860	NM_198656	ENSMUSG00000039155	Cdh26	Gm1010	cadherin-like 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133159316-4	chr4	133159210	133159410	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153423, intron 1 of 8)	intron (NM_153423, intron 1 of 8)	28677.0	NM_153423	242687.0	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	5.87004211281986	5.68487463318059	6.111760363272	6.24219126399104	5.00450945852904	4.88373998398316	6.05373177229363	5.62151543449846	-0.584826002389973	0.0497181918216821	0.325019360048969
Merged-chr7-96549117-1	chr7	96549017	96549217	+	556.0	f1_c57bl6.idr	intron (NM_001310762, intron 4 of 32)	intron (NM_001310762, intron 4 of 32)	-207153.0	NR_046043	670727.0	Mm.421352	NR_046043	ENSMUSG00000085751	Gm15412	-	predicted gene 15412	ncRNA	0.748772097129404	0.90975498920676	0.278776009155923	0.273402593812427	0.545338822153217	0.921124312357958	0.280310331873377	0.274342028197634	-0.296196846685589	0.876751036451223	1
Merged-chr17-45746010-1	chr17	45745910	45746110	+	569.0	f1_c57bl6.idr	intron (NR_152153, intron 1 of 4)	intron (NR_152153, intron 1 of 4)	11504.0	NR_152153	433111.0	Mm.213441	NR_152153	ENSMUSG00000097727	F630040K05Rik	-	RIKEN cDNA F630040K05 gene	ncRNA	2.11356095809572	0.956033702507353	1.51868372296023	0.921081585665299	2.06620573764068	1.58840611534069	1.79680614023846	0.9238072194086	0.512964717875044	0.699068727685481	0.998344698631614
Merged-chr10-85002216-3	chr10	85002109	85002309	+	758.766663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183172, intron 9 of 9)	intron (NM_183172, intron 9 of 9)	84596.0	NM_183172	237422.0	Mm.18936	NM_183172	ENSMUSG00000035620	Ric8b	BC051080|Ric-8|Ric-8b	RIC8 guanine nucleotide exchange factor B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-31256144-2	chr5	31256044	31256244	+	584.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026298, intron 40 of 47)	intron (NM_026298, intron 40 of 47)	4438.0	NM_027221	69815.0	Mm.389609	NM_027221	ENSMUSG00000029149	Krtcap3	2010001C09Rik|AW321088|Kcp3	keratinocyte associated protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131524523-2	chr1	131524423	131524623	+	614.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081011, intron 2 of 22)	intron (NM_001081011, intron 2 of 22)	2838.0	NM_001081011	14270.0	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	1.1159285006234	0.844070039470228	1.69176526769235	0.819686334035405	1.63933255680436	1.07215815930449	1.49082667048331	1.43977683986863	0.952469741314367	0.47924554340857	0.928092227925527
Merged-chr15-33265869-3	chr15	33265762	33265962	+	912.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176073, intron 3 of 7)	L2c|LINE|L2	140077.0	NR_033608	73486.0	Mm.483393	NM_028551	ENSMUSG00000058101	1700084J12Rik	-	ribosomal protein L7-like 1 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-88429009-2	chr12	88428909	88429109	+	684.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361601, intron 3 of 8)	intron (NM_001361601, intron 3 of 8)	-51686.0	NR_045888	71818.0	Mm.490789	NR_045888	ENSMUSG00000113434	3200001D21Rik	-	RIKEN cDNA 3200001D21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-88440732-2	chr4	88440650	88440850	+	643.083374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1824.0	NM_025760	66775.0	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	-2.18138529563533	-2.15523716995652	-2.1631445789866	-2.16963996020037	-2.05513010215571	-2.15352360143315	-2.16135451490766	-2.16847729006863	0.759018020146679	0.829933115115583	1
Merged-chr19-4097646-3	chr19	4097553	4097753	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026373, intron 1 of 3)	intron (NM_026373, intron 1 of 3)	302.0	NM_026373	52004.0	Mm.29609	NM_026373	ENSMUSG00000024856	Cdk2ap2	5830466O21Rik|D19Ertd144e|Doc-1r	CDK2-associated protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-5823348-2	chr10	5823281	5823481	+	851.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175374, intron 1 of 6)	intron (NM_175374, intron 1 of 6)	562.0	NM_175374	108853.0	Mm.55082	NM_175374	ENSMUSG00000019774	Mtrf1l	9130004K12Rik	mitochondrial translational release factor 1-like	protein-coding	1.12617837355993	1.29810067797618	0.635157074133698	1.30257404412907	1.03176090200272	1.18112452062281	0.637402556021746	0.628647646719489	-1.06321945450383	0.493675008061388	0.935679785535167
Merged-chr1-36304461-2	chr1	36304361	36304561	+	593.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3272.0	NM_001172206	214855.0	Mm.34316	NM_145996	ENSMUSG00000037447	Arid5a	D430024K22Rik|Mrf1	AT rich interactive domain 5A (MRF1-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126979216-2	chr8	126979116	126979316	+	902.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_151744, intron 1 of 1)	intron (NR_151744, intron 1 of 1)	222.0	NR_151744	629746.0	Mm.264954	NR_151744		Gm29688	-	predicted gene, 29688	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-24963946-3	chr6	24963857	24964057	+	708.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7832.0	NM_177013	319832.0	Mm.127446	NM_177013	ENSMUSG00000048022	Tmem229a	6332401O19Rik	transmembrane protein 229A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30422251-4	chr7	30422144	30422344	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360907)	promoter-TSS (NM_001360907)	-162.0	NM_001360907	243910.0	Mm.386878	NM_172142	ENSMUSG00000036931	Nfkbid	I-kappa-B-delta|IkappaBNS|ikB-delta	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	protein-coding	5.94018852793332	5.92997942533779	7.21314287271595	6.27264433340812	6.37990161960698	6.17654983141895	6.24748141918009	6.43215595099618	-0.141096169541209	0.607221667496075	0.974576632476413
Merged-chr18-60911960-4	chr18	60911859	60912059	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001038499)	promoter-TSS (NM_001038499)	-281.0	NM_001038499	545260.0	Mm.20147	NM_001038499	ENSMUSG00000036412	Arsi	BC020108	arylsulfatase i	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-99425472-4	chr10	99425374	99425574	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	162243.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133369665-4	chr4	133369547	133369747	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358455)	promoter-TSS (NM_001358455)	-88.0	NM_016981	20544.0	Mm.4312	NM_016981	ENSMUSG00000028854	Slc9a1	AW554487|Apnh|Mir5122|Nhe1|mir-5122|swe	solute carrier family 9 (sodium/hydrogen exchanger), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-117888293-4	chr5	117888198	117888398	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008712, intron 2 of 27)	intron (NM_008712, intron 2 of 27)	21459.0	NM_008712	18125.0	Mm.44249	NM_008712	ENSMUSG00000029361	Nos1	2310005C01Rik|N-NOS|NC-NOS|NO|NOS|NOS-I|Nos-1|bNOS|nNOS	nitric oxide synthase 1, neuronal	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-139443200-2	chr1	139443100	139443300	+	622.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_172643, intron 10 of 10)	B2_Mm1a|SINE|B2	-11573.0	NM_009791	12316.0	Mm.168523	NM_009791	ENSMUSG00000033952	Aspm	Calmbp1|D330028K02Rik|MCPH5|Sha1	abnormal spindle microtubule assembly	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-88791644-5	chr5	88791551	88791751	+	638.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26638.0	NM_007832	13178.0	Mm.298892	NM_007832	ENSMUSG00000029366	Dck	-	deoxycytidine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-87756681-4	chr11	87756577	87756777	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029555)	promoter-TSS (NR_029555)	-187.0	NR_029555	387160.0		NR_029555	ENSMUSG00000105196	Mir142	Mirn142|miR-142|mir-142a|mmu-mir-142|mmu-mir-142a	microRNA 142	ncRNA	5.48926850221447	6.3141596640609	6.04791277648842	6.42703805660808	6.05308291140559	6.60940099970829	6.22120651608503	6.60959126799701	0.307920918953328	0.21928215489755	0.710517864987671
Merged-chr4-136132812-3	chr4	136132749	136132949	+	712.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4|SINE|ID	-10973.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	1.31714022364474	1.74741607015562	1.28134080415699	1.90275693093375	1.81019785321281	0.909306966719807	1.11098913908973	0.880132040055425	-1.17811564873798	0.366078421770898	0.861036332257394
Merged-chr7-97251186-2	chr7	97251086	97251286	+	741.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162477, intron 2 of 9)	B1_Mm|SINE|Alu	74778.0	NM_001177412	244144.0	Mm.297541	NM_001177412	ENSMUSG00000035713	Usp35	Gm1088|Gm493	ubiquitin specific peptidase 35	protein-coding	1.24764267119015	1.14614356841058	1.36757963084423	0.741325590706949	1.15187283780794	1.55130885853723	1.11549980085114	0.742889239200992	0.118276034657575	0.932666415684053	0.998431161219273
Merged-chr9-59544923-4	chr9	59544816	59545016	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010421, intron 1 of 13)	intron (NM_010421, intron 1 of 13)	5376.0	NM_010421	15211.0	Mm.2284	NM_010421	ENSMUSG00000025232	Hexa	Hex-1	hexosaminidase A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-88692090-3	chr8	88691998	88692198	+	646.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4930.0	NM_001128170	74256.0	Mm.490395	NM_173369	ENSMUSG00000036712	Cyld	2010013M14Rik|2900009M21Rik|C130039D01Rik|CDMT|CYLD1|EAC|mKIAA0849	CYLD lysine 63 deubiquitinase	protein-coding	2.11507911022913	3.22835779958843	2.29855041857023	3.2910805673994	2.5842613141576	2.79466686956493	1.74421514956087	2.2440988856999	-0.872207786015583	0.279895342728567	0.783093158405392
Merged-chr11-114674156-2	chr11	114674056	114674256	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1312.0	NM_053273	117160.0	Mm.271934	NM_053273	ENSMUSG00000034714	Ttyh2	1110001A03Rik	tweety family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-22891818-2	chr6	22891718	22891918	+	694.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361349, intron 1 of 28)	B4|SINE|B4	16316.0	NM_001361349	19283.0	Mm.41639	NM_011219	ENSMUSG00000068748	Ptprz1	AI850339|DSD-1-PG|PTPbeta|PTPzeta|Ptprz|Ptpz|R-PTP-zeta|RPTPz|Rptpbeta	protein tyrosine phosphatase, receptor type Z, polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-6322727-4	chr2	6322634	6322834	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080548)	promoter-TSS (NM_001080548)	-23.0	NM_001080548	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-35380084-4	chr6	35379980	35380180	+	988.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49234.0	NR_040526	73409.0	Mm.69443	NR_040526	ENSMUSG00000107341	1700065J11Rik	-	RIKEN cDNA 1700065J11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106762317-3	chr11	106762230	106762430	+	889.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_073165, intron 6 of 9)	L1MB3|LINE|L1	11104.0	NM_001033435	380732.0	Mm.343952	NM_001033435	ENSMUSG00000040528	Milr1	Allergin-1|Gm885|Mca32	mast cell immunoglobulin like receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85848387-3	chr12	85848290	85848490	+	785.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347395, intron 5 of 32)	MLT1F1|LTR|ERVL-MaLR	23440.0	NM_001081423	320244.0	Mm.132172	NM_177114	ENSMUSG00000012609	Ttll5	1700048H13Rik|2310009M18Rik|4930556H18Rik|AI428864|D630041K24Rik|R75373|Stamp|mKIAA0998	tubulin tyrosine ligase-like family, member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122732178-3	chr5	122732102	122732302	+	906.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_145358, exon 16 of 16)	3' UTR (NM_145358, exon 16 of 16)	24658.0	NM_001310718	18438.0	Mm.290884	NM_011026	ENSMUSG00000029470	P2rx4	AI504491|AW555605|D5Ertd444e|P2X4	purinergic receptor P2X, ligand-gated ion channel 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-77301947-2	chr16	77301847	77302047	+	588.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27381.0	NR_015543	77994.0	Mm.394688	NR_015543	ENSMUSG00000090386	Mir99ahg	2810055G20Rik|D730043B02Rik	Mir99a and Mirlet7c-1 host gene (non-protein coding)	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-139979600-4	chr7	139979496	139979696	+	867.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347613)	promoter-TSS (NM_001347613)	-841.0	NM_001347613	381933.0	Mm.440431	NM_001033465	ENSMUSG00000073795	6430531B16Rik	Gm1093	RIKEN cDNA 6430531B16 gene	protein-coding	3.17808835211689	2.92869638900717	1.7668662646509	2.53495569057354	1.84824684231561	3.30383515769826	2.50291380886129	2.9437520206377	0.0882086596024314	0.912923612555151	0.998431161219273
Merged-chr9-106685855-4	chr9	106685731	106685931	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011573)	promoter-TSS (NM_011573)	-15.0	NM_011573	21767.0	Mm.22266	NM_011573	ENSMUSG00000040813	Tex264	TEG-264	testis expressed gene 264	protein-coding	3.80194600849291	3.70524506275986	5.0915547598194	4.00497657999095	4.45666427973008	4.21946526550011	4.57759903556558	3.57949066045517	-0.0277824720782819	0.954010482402443	0.998431161219273
Merged-chr9-45910538-2	chr9	45910438	45910638	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_104055, intron 4 of 17)	intron (NR_104055, intron 4 of 17)	-3627.0	NM_001361112	235315.0	Mm.220945	NM_178709	ENSMUSG00000042790	Rnf214	D130054N24Rik	ring finger protein 214	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-25262520-4	chr2	25262420	25262620	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175286)	promoter-TSS (NM_175286)	-78.0	NM_175286	97031.0	Mm.308539	NM_175286	ENSMUSG00000048707	Tprn	C430004E15Rik|C87750	taperin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47753422-2	chr17	47753322	47753522	+	819.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161723, intron 1 of 8)	intron (NM_001161723, intron 1 of 8)	15491.0	NM_001161723	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	2.0701064406817	1.83521296856274	2.33991440396486	2.27219648266809	1.99588514753405	1.22424792097535	1.43436456033524	1.73656478553066	-1.44066059927288	0.158807225159876	0.617957541881576
Merged-chr1-75315634-2	chr1	75315534	75315734	+	864.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_016878, exon 6 of 15)	exon (NM_016878, exon 6 of 15)	1383.0	NM_016878	13437.0	Mm.24680	NM_016878	ENSMUSG00000026209	Dnpep	AA407814	aspartyl aminopeptidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-38042707-2	chr3	38042607	38042807	+	741.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	143894.0	NR_040559	626410.0	Mm.389417	NR_040559	ENSMUSG00000106461	Gm20755	-	predicted gene, 20755	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-14918570-2	chr17	14918470	14918670	+	615.400024	f1_balb.idr|f1_c57bl6.idr	intron (NM_175173, intron 10 of 24)	intron (NM_175173, intron 10 of 24)	24554.0	NM_175173	71682.0	Mm.122698	NM_175173	ENSMUSG00000046991	Wdr27	0610012K18Rik	WD repeat domain 27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-23880632-2	chr18	23880532	23880732	+	767.400024	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162941, intron 6 of 7)	intron (NM_001162941, intron 6 of 7)	-74056.0	NM_027007	69256.0	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26540546-2	chr17	26540446	26540646	+	549.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB1|LINE|L1	-20966.0	NM_026170	67458.0	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-52943455-2	chr2	52943346	52943546	+	627.5	f0_balb.idr|f0_c57.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	85578.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-5259124-1	chr6	5259024	5259224	+	680.0	f1_balb.idr	Intergenic	IAP-d-int|LTR|ERVK	-2891.0	NM_173006	269823.0	Mm.9122	NM_173006	ENSMUSG00000029759	Pon3	2810004E20|AI786302	paraoxonase 3	protein-coding	-0.214854378381054	-0.550968267479614	-0.554062964449357	-0.556436930561289	-0.309638250921846	-0.550267925734499	-0.553382123456127	-0.157266795264804	0.892855335083442	0.739800110171652	1
Merged-chr3-16043555-3	chr3	16043461	16043661	+	816.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37229.0	NM_001081687	381484.0	Mm.217376	NM_001081687	ENSMUSG00000078780	Gm5150	-	predicted gene 5150	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-92528759-4	chr5	92528658	92528858	+	997.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23101.0	NM_007644	12492.0	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-99041210-5	chr11	99041153	99041353	+	952.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010517)	promoter-TSS (NM_010517)	9.0	NM_010517	16010.0	Mm.233799	NM_010517	ENSMUSG00000017493	Igfbp4	AI875747|Deb2|IBP-4|IGFBP-4	insulin-like growth factor binding protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-79176810-2	chr3	79176710	79176910	+	639.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30935.0	NM_001099624	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-18959250-1	chr2	18959150	18959350	+	873.0	f0_balb.idr	intron (NM_008845, intron 1 of 9)	intron (NM_008845, intron 1 of 9)	38871.0	NM_008845	18718.0	Mm.313977	NM_008845	ENSMUSG00000026737	Pip4k2a	AW742916|Pip5k2a	phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-119239286-8	chr10	119239212	119239412	+	938.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027994, intron 1 of 14)	CpG	743.0	NM_027994	71902.0	Mm.203965	NM_027994	ENSMUSG00000020114	Cand1	2310038O07Rik|6330512O03Rik|AI195005|AI846556|D10Ertd516e|Tp120a|mKIAA0829	cullin associated and neddylation disassociated 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-60733546-4	chr18	60733460	60733660	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001348102)	promoter-TSS (NM_001348102)	-419.0	NM_001348102	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	0.131213550891941	-0.00409923674261814	-0.505873765803644	-0.508894729985215	-0.513162207402232	-0.50107373396051	-0.505009994445561	-0.508367040240373	-3.48483542337736	0.199425668339178	1
Merged-chr10-77983596-2	chr10	77983496	77983696	+	625.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026431, intron 6 of 6)	intron (NM_026431, intron 6 of 6)	4946.0	NM_026431	67884.0	Mm.297512	NM_026431	ENSMUSG00000020284	1810043G02Rik	AV026620|D10Jhu13e	RIKEN cDNA 1810043G02 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-94607583-3	chr16	94607487	94607687	+	846.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113389, intron 1 of 11)	intron (NM_001113389, intron 1 of 11)	-3832.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-94864822-4	chr17	94864713	94864913	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024731)	promoter-TSS (NM_001024731)	-105.0	NM_001024731	100044193.0		NM_001024731	ENSMUSG00000095193	Gm20939	-	predicted gene, 20939	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72096379-4	chr6	72096258	72096458	+	955.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1250.0	NM_001035228	20454.0	Mm.38248	NM_011375	ENSMUSG00000056091	St3gal5	3S-T|Siat9|[a]2	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152571559-4	chr1	152571443	152571643	+	899.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 4 of 17)	intron (NM_016846, intron 4 of 17)	53674.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-96865934-2	chr11	96865882	96866082	+	891.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	15589.0	NR_029562	387170.0		NR_029562	ENSMUSG00000065515	Mir152	Mirn152|mir-152|mmu-mir-152	microRNA 152	ncRNA	0.309719847288927	0.344558056753676	1.58302798562469	0.531335080833011	0.31196050196266	0.347047807637975	1.15378395996513	0.708045663784026	-0.642637314232374	0.720336242787623	0.998431161219273
Merged-chr13-92336561-2	chr13	92336416	92336616	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001311120, intron 8 of 23)	intron (NM_001311120, intron 8 of 23)	-18267.0	NM_010049	13361.0	Mm.23695	NM_010049	ENSMUSG00000021707	Dhfr	8430436I03Rik|AA607882|AI662710|AW555094	dihydrofolate reductase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-74879709-1	chr17	74879609	74879809	+	616.0	f1_balb.idr	Intergenic	Intergenic	-125820.0	NM_019919	268977.0	Mm.269747	NM_019919	ENSMUSG00000001870	Ltbp1	9430031G15Rik|9830146M04|Ltbp-1|Ltbp1L|TGF-beta1-BP-1|Tgfb|b2b1000Clo	latent transforming growth factor beta binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-68897758-1	chr11	68897658	68897858	+	575.0	f1_c57bl6.idr	Intergenic	Intergenic	-3808.0	NM_009080	19941.0	Mm.3229	NM_009080	ENSMUSG00000060938	Rpl26	SIG-20	ribosomal protein L26	protein-coding	0.563877949922289	-0.201038100728599	-0.205722174578642	0.0938576995986025	-0.21443750841222	-0.199981918327376	-0.204689262262327	0.0983753719745698	-2.02396340865864	0.401224504258809	1
Merged-chr11-85667729-4	chr11	85667635	85667835	+	971.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138681, intron 24 of 25)	intron (NM_138681, intron 24 of 25)	52009.0	NR_045875	71489.0	Mm.442482	NR_045875	ENSMUSG00000086199	Bcas3os1	8430403D17Rik	breast carcinoma amplified sequence 3, opposite strand 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-64717644-4	chr1	64717526	64717726	+	913.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001097644, intron 7 of 9)	intron (NM_001097644, intron 7 of 9)	20124.0	NM_001042659	14367.0	Mm.150813	NM_022721	ENSMUSG00000045005	Fzd5	5330434N09Rik|AI427138|Fz-5|Fz5|mFz5	frizzled class receptor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-130811939-4	chr4	130811854	130812054	+	893.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011520, intron 1 of 4)	intron (NM_011520, intron 1 of 4)	19417.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-72866001-2	chr1	72865901	72866101	+	750.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010518, intron 1 of 3)	intron (NM_010518, intron 1 of 3)	8864.0	NM_010518	16011.0	Mm.405761	NM_010518	ENSMUSG00000026185	Igfbp5	AI256729|AW208790|IGFBP-5|IGFBP-5P	insulin-like growth factor binding protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-36475138-4	chr3	36475026	36475226	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028183)	promoter-TSS (NM_028183)	398.0	NR_105976	102466786.0		NR_105976	ENSMUSG00000098808	Mir7009	Gm27472|mmu-mir-7009	microRNA 7009	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6858242-4	chr19	6858153	6858353	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081291)	promoter-TSS (NM_001081291)	-42.0	NM_001081291	78317.0	Mm.329596	NM_198008	ENSMUSG00000047810	Ccdc88b	2610041P08Rik|Ccdc88	coiled-coil domain containing 88B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-119438976-4	chr8	119438885	119439085	+	762.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027950, intron 1 of 5)	intron (NM_027950, intron 1 of 5)	1823.0	NM_027950	71839.0	Mm.272357	NM_027950	ENSMUSG00000074063	Osgin1	1700012B18Rik|Okl38	oxidative stress induced growth inhibitor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-26239832-4	chr8	26239749	26239949	+	871.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	81680.0	NM_199042	73754.0	Mm.383241	NM_199042	ENSMUSG00000037214	Thap1	4833431A01Rik|AW490810	THAP domain containing, apoptosis associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-110446830-1	chr8	110446730	110446930	+	612.5	f0_c57.idr	intron (NM_172916, intron 20 of 86)	MTD|LTR|ERVL-MaLR	55526.0	NR_105058	100861869.0	Mm.84499	NR_105058		Gm21283	-	predicted gene, 21283	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46393049-1	chr19	46392949	46393149	+	654.0	f1_balb.idr	intron (NM_016860, intron 1 of 10)	B1_Mus2|SINE|Alu	2686.0	NM_016860	54130.0	Mm.3118	NM_016860	ENSMUSG00000025228	Actr1a	Arp1|alpha-Arp1	ARP1 actin-related protein 1A, centractin alpha	protein-coding	0.635428426093392	1.06300066115857	1.39879543173105	0.650221518369072	1.17935976633805	1.22462131310522	1.41265797233617	0.651762998307378	0.715667974644123	0.642563749976531	0.982823301118608
Merged-chr14-57887290-4	chr14	57887160	57887360	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029492, intron 1 of 12)	intron (NM_029492, intron 1 of 12)	3076.0	NM_029492	75965.0	Mm.29044	NM_029492	ENSMUSG00000021969	Zdhhc20	4930542A17Rik|5033406L14Rik|AI448102|B230110O18Rik|HK11	zinc finger, DHHC domain containing 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-86132696-2	chr15	86132596	86132796	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172611, intron 15 of 18)	intron (NM_172611, intron 15 of 18)	-53032.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85659981-2	chr12	85659881	85660081	+	918.8333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26739.0	NM_016767	53314.0	Mm.6672	NM_016767	ENSMUSG00000034266	Batf	B-ATF|SFA-2	basic leucine zipper transcription factor, ATF-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-79352340-4	chr12	79352246	79352446	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	54995.0	NM_001252562	19363.0	Mm.341756	NM_009014	ENSMUSG00000059060	Rad51b	AI553500|R51H2|Rad51l1|mREC2	RAD51 paralog B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59511695-3	chr15	59511592	59511792	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026746, intron 4 of 6)	L2a|LINE|L2	-136962.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	3.12046940485066	3.68651515498499	2.77463205974491	3.47140271457255	2.33428471996934	2.30639194059632	1.50844133441313	2.59087445953945	-1.9910122286451	0.00726056036661608	0.0868227939654416
Merged-chr16-30010413-4	chr16	30010319	30010519	+	933.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033631, intron 1 of 2)	intron (NR_033631, intron 1 of 2)	1752.0	NR_033631	100043102.0	Mm.30797	NR_033631	ENSMUSG00000097184	4632428C04Rik	Gm4231	RIKEN cDNA 4632428C04 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-7576025-2	chr3	7575925	7576125	+	821.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_008371, exon 4 of 5)	exon (NM_008371, exon 4 of 5)	36868.0	NM_001313890	16196.0	Mm.3825	NM_008371	ENSMUSG00000040329	Il7	A630026I06Rik|Il-7|hlb368	interleukin 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91286236-2	chr2	91286136	91286336	+	679.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175123, intron 4 of 8)	Lx|LINE|L1	21121.0	NM_023854	77038.0	Mm.43636	NM_023854	ENSMUSG00000027255	Arfgap2	2310032E02Rik|Zfp289	ADP-ribosylation factor GTPase activating protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101053199-2	chr15	101053099	101053299	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001214911, exon 1 of 1)	exon (NM_001214911, exon 1 of 1)	1200.0	NM_001214911	668225.0	Mm.385011	NM_001214911	ENSMUSG00000095440	Fignl2	EG668225	fidgetin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-85012782-3	chr15	85012664	85012864	+	941.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4377.0	NM_023478	22270.0	Mm.46214	NM_023478	ENSMUSG00000022435	Upk3a	1110017C07Rik|UP3a|UPIII|Upk3	uroplakin 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-102852236-1	chr2	102852136	102852336	+	593.0	f0_balb.idr	intron (NM_009851, intron 5 of 18)	intron (NM_009851, intron 5 of 18)	49429.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	1.51119516646471	2.57398210804974	2.05033175043469	1.80737819447212	1.89906189251238	3.01033483030537	3.27038277842518	2.89720374939364	1.72249331754223	0.0436757309047668	0.299897798204154
Merged-chr4-134478204-4	chr4	134478053	134478253	+	918.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER102c|DNA|hAT-Charlie	9833.0	NM_019641	16765.0	Mm.378957	NM_019641	ENSMUSG00000028832	Stmn1	19k|Lag|Lap18|Op18|P18|P19|Pig|Pp17|Pp18|Pp19|Pr22|Smn	stathmin 1	protein-coding	0.889751809557789	1.57791805782877	1.89558336842167	0.916930065683623	0.893872979611005	1.87090181427985	1.91248715389885	1.94337755384141	0.995243083072143	0.453306441297728	0.919022385553468
Merged-chr7-48962109-1	chr7	48962009	48962209	+	677.333313	f0_balb.idr	intron (NM_001111016, intron 1 of 38)	intron (NM_001111016, intron 1 of 38)	3036.0	NM_001111016	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97810292-2	chr6	97810192	97810392	+	566.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113198, intron 1 of 9)	intron (NM_001113198, intron 1 of 9)	3234.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167700954-4	chr2	167700832	167701032	+	973.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9755.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65303797-3	chr9	65303691	65303891	+	610.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001044389, intron 3 of 12)	MTEb|LTR|ERVL-MaLR	9531.0	NM_001044389	270166.0	Mm.30088	NM_011802	ENSMUSG00000015357	Clpx	AU014732|E330029I21	caseinolytic mitochondrial matrix peptidase chaperone subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26510881-2	chr17	26510794	26510994	+	608.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2422.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	1.40256034870753	1.73652048393005	0.935990178011552	1.84687825761685	2.21674094543164	2.00040923893819	0.94055838245834	0.922616765951544	0.423914031147883	0.747496316387086	0.998431161219273
Merged-chr6-85937039-4	chr6	85936920	85937120	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	21049.0	NM_001362065	69786.0	Mm.218434	NM_176842	ENSMUSG00000054226	Tprkb	0610033G21Rik|1810034M08Rik|Cgi-121|DRWMS1|mDRWMS1	Tp53rk binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-155814837-3	chr1	155814738	155814938	+	923.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1939.0	NM_001024945	104009.0	Mm.27035	NM_023268	ENSMUSG00000033684	Qsox1	1300003H02Rik|QSOX|Qscn6|SOx|b2b2673Clo	quiescin Q6 sulfhydryl oxidase 1	protein-coding	2.32784998998014	2.63629375801771	1.50483811368204	3.00802554539507	2.87381540171387	2.65692516184754	3.12178220981122	4.02093575061449	1.4300816382749	0.0624442235652683	0.371261543278538
Merged-chr13-81235546-2	chr13	81235446	81235646	+	731.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 85 of 89)	intron (NM_054053, intron 85 of 89)	271472.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-134076869-6	chr1	134076747	134076947	+	972.111084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007570, exon 2 of 2)	3' UTR (NM_007570, exon 2 of 2)	2308.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-134240628-1	chr3	134240528	134240728	+	555.0	f1_balb.idr	promoter-TSS (NR_035435)	promoter-TSS (NR_035435)	-45.0	NR_035435	100316832.0		NR_035435	ENSMUSG00000084564	Mir1895	Mirn1895|mmu-mir-1895	microRNA 1895	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-89634208-2	chr6	89634108	89634308	+	578.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9780.0	NM_001178060	232223.0	Mm.229332	NM_153162	ENSMUSG00000000811	Txnrd3	AI196535|TGR|TR2	thioredoxin reductase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-122570839-4	chr10	122570728	122570928	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040616)	promoter-TSS (NR_040616)	-937.0	NR_040616	319272.0	Mm.411763	NR_040616	ENSMUSG00000112095	A130077B15Rik	-	RIKEN cDNA A130077B15 gene	ncRNA	-0.294083384950798	-0.277963382818132	0.430175288204581	-0.287290034214969	-0.293070061983337	-0.276782190008417	0.44311158986884	-0.286577643912737	0.0410571026119648	0.987250810110592	1
Merged-chr12-16870393-2	chr12	16870294	16870494	+	912.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24584.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	-0.751044034821655	-0.740930839898789	-0.284362753825833	-0.746804228007503	-0.750413706122334	-0.233388206693112	-0.743516281082833	-0.746357722511573	0.196460799819441	0.947227125273439	1
Merged-chr12-35957388-2	chr12	35957288	35957488	+	629.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	31767.0	NM_207531	403205.0	Mm.190508	NM_207531	ENSMUSG00000036231	Agr3	BCMP11|E030025L21Rik|Gm888	anterior gradient 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-10029133-3	chr18	10029034	10029234	+	701.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038589, intron 1 of 14)	intron (NM_001038589, intron 1 of 14)	679.0	NM_001360884	59025.0	Mm.329277	NM_021522	ENSMUSG00000047879	Usp14	2610005K12Rik|2610037B11Rik|AW107924|C78769|ax|nmf375	ubiquitin specific peptidase 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-117439309-4	chr2	117439203	117439403	+	872.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-96426.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-11771024-2	chr19	11770934	11771134	+	967.4500119999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_025606, intron 2 of 3)	intron (NM_025606, intron 2 of 3)	619.0	NM_025606	94063.0	Mm.203928	NM_025606	ENSMUSG00000024683	Mrpl16	2310039D06Rik	mitochondrial ribosomal protein L16	protein-coding	1.21428176779329	0.850221668999463	0.456981922255481	0.449831003204348	1.22887504851039	1.00838522144822	0.459016533927745	0.451084100612103	0.234492844670099	0.895232992860286	1
Merged-chr11-106791979-2	chr11	106791879	106792079	+	679.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166685, intron 2 of 18)	intron (NM_001166685, intron 2 of 18)	2727.0	NM_001166685	320162.0	Mm.30524	NM_177088	ENSMUSG00000018372	Cep95	4732496G21Rik|AI118346|AI448335|Ccdc45|D330027A14Rik|F630025I20Rik	centrosomal protein 95	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124493871-2	chr6	124493771	124493971	+	678.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_181344, exon 2 of 6)	exon (NM_181344, exon 2 of 6)	758.0	NM_181344	232371.0	Mm.132974	NM_181344	ENSMUSG00000038527	C1rl	C1r-LP|C1rl1|C1rlp	complement component 1, r subcomponent-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91194273-2	chr2	91194173	91194373	+	727.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355279, intron 1 of 9)	MIRb|SINE|MIR	762.0	NM_013839	22259.0	Mm.22690	NM_013839	ENSMUSG00000002108	Nr1h3	AU018371|LXR|RLD1|Unr1	nuclear receptor subfamily 1, group H, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-31938965-4	chr16	31938839	31939039	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172822, intron 1 of 2)	MTE2b|LTR|ERVL-MaLR	5088.0	NM_172822	239827.0	Mm.440388	NM_172822	ENSMUSG00000045625	Pigz	F630022B06Rik	phosphatidylinositol glycan anchor biosynthesis, class Z	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-60688446-2	chr18	60688346	60688546	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001348101, exon 15 of 15)	3' UTR (NM_001348101, exon 15 of 15)	25036.0	NR_045401	328963.0	Mm.417203	NR_045401		G630071F17Rik	G630071F17	RIKEN cDNA G630071F17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-33918847-2	chr17	33918747	33918947	+	565.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009318)	promoter-TSS (NM_009318)	-631.0	NM_001025313	21356.0	Mm.154457	NM_009318	ENSMUSG00000024308	Tapbp	D17Wsu91e|TPN	TAP binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-62342093-2	chr10	62341993	62342193	+	785.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_038038, intron 1 of 1)	intron (NR_038038, intron 1 of 1)	1486.0	NR_038038	70162.0	Mm.441212	NR_038038		Hk1os	2210417K05Rik	hexokinase 1, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-102887256-4	chr2	102887156	102887356	+	957.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039150, intron 1 of 13)	intron (NM_001039150, intron 1 of 13)	14409.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-113012609-2	chr12	113012509	113012709	+	596.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1899.0	NM_001291445	217893.0	Mm.35754	NM_198165	ENSMUSG00000021143	Pacs2	6720425G15Rik|AW208651|AW489976|E230011J22|Pacs1l|mKIAA0602	phosphofurin acidic cluster sorting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-31914644-3	chr18	31914538	31914738	+	820.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-2735.0	NM_026006	67158.0	Mm.31537	NM_026006	ENSMUSG00000044982	Sft2d3	2610206C24Rik|AI847965|AW046173	SFT2 domain containing 3	protein-coding	1.49511086705559	1.04378964712	1.26237202215085	1.23103613680774	1.63787457183414	1.70022005889513	2.31394885301786	2.45388649882984	2.61284028261492	0.0219276019792679	0.190643020686418
Merged-chr1-157372726-2	chr1	157372626	157372826	+	567.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177644, intron 1 of 17)	intron (NM_177644, intron 1 of 17)	-39626.0	NR_027984	69953.0	Mm.286863	NM_027274	ENSMUSG00000049881	2810025M15Rik	AI429618	RIKEN cDNA 2810025M15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-77740659-3	chr1	77740560	77740760	+	697.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TAAA)n|Simple_repeat|Simple_repeat	-225572.0	NM_007936	13838.0	Mm.400747	NM_007936	ENSMUSG00000026235	Epha4	2900005C20Rik|AI385584|Cek8|Hek8|Sek|Sek1|Tyro1|rb	Eph receptor A4	protein-coding	2.28527031545143	1.93579387074606	2.70635204545945	1.60048575889723	1.53246588701359	3.01415901464011	3.2100764019102	2.82106244864577	1.18447127891482	0.176766095854412	0.646570188136342
Merged-chr6-129103337-4	chr6	129103250	129103450	+	951.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2447.0	NM_153506	232409.0	Mm.30870	NM_153506	ENSMUSG00000030155	Clec2e	Clra|clr-a	C-type lectin domain family 2, member e	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102441643-2	chr12	102441543	102441743	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1830.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-52675038-2	chr2	52674938	52675138	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037099, intron 2 of 13)	intron (NM_001037099, intron 2 of 13)	821.0	NM_001285428	12298.0	Mm.330223	NM_146123	ENSMUSG00000017412	Cacnb4	3110038O15Rik|Cchb4|lh	calcium channel, voltage-dependent, beta 4 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-24313378-2	chr9	24313278	24313478	+	645.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_175678, intron 9 of 9)	intron (NM_175678, intron 9 of 9)	189762.0	NM_001359948	244745.0	Mm.38526	NM_172920	ENSMUSG00000043067	Dpy19l1	1100001I19Rik|6030402K12|AI225861|AW558481	dpy-19-like 1 (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-13561535-3	chr15	13561421	13561621	+	638.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-387846.0	NM_007666	12563.0	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70880274-4	chr14	70880130	70880330	+	996.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9877.0	NM_001302095	14586.0	Mm.32619	NM_008115	ENSMUSG00000022103	Gfra2	-	glial cell line derived neurotrophic factor family receptor alpha 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72095370-3	chr6	72095293	72095493	+	874.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2215.0	NM_001035228	20454.0	Mm.38248	NM_011375	ENSMUSG00000056091	St3gal5	3S-T|Siat9|[a]2	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-125559410-2	chr1	125559310	125559510	+	650.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-1185.0	NM_001356294	74150.0	Mm.28654	NM_028787	ENSMUSG00000026342	Slc35f5	1300003P13Rik|AI646727	solute carrier family 35, member F5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-102860195-4	chr9	102860093	102860293	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001284258, intron 1 of 13)	intron (NM_001284258, intron 1 of 13)	25273.0	NM_001284258	20187.0	Mm.335391	NM_013649	ENSMUSG00000032547	Ryk	AW536699|ERK-3|Vik	receptor-like tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-148981981-3	chr3	148981890	148982090	+	778.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27355.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-125067613-9	chr8	125067588	125067788	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_174854, intron 1 of 12)	intron (NM_174854, intron 1 of 12)	13493.0	NM_174854	244667.0	Mm.233504	NM_170596	ENSMUSG00000043051	Disc1	-	disrupted in schizophrenia 1	protein-coding	6.19618559729692	4.89076809230745	6.1212879786482	4.78833752610196	6.28533498178682	5.52824002027429	6.00480910465114	5.01353720360329	0.150639485953009	0.682543773778528	0.995882295196263
Merged-chr11-74670504-2	chr11	74670404	74670604	+	868.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001081158, exon 26 of 26)	3' UTR (NM_001081158, exon 26 of 26)	21009.0	NM_001081158	74148.0	Mm.214574	NM_001081158	ENSMUSG00000020741	Cluh	1300001I01Rik|Kiaa0664|mKIAA0664	clustered mitochondria (cluA/CLU1) homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-12029585-3	chr17	12029524	12029724	+	771.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016694, intron 10 of 11)	intron (NM_016694, intron 10 of 11)	-89660.0	NM_026644	68262.0	Mm.258300	NM_026644	ENSMUSG00000023827	Agpat4	1500003P24Rik	1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)	protein-coding	-0.00481007904042843	-0.160642752113942	-0.343194055404058	0.148409018949673	-0.215768583785778	-0.338798021234727	-0.342405202613079	-0.345465609971379	-2.59363921575395	0.272282350753491	1
Merged-chr11-117781719-4	chr11	117781614	117781814	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001195088)	promoter-TSS (NM_001195088)	-583.0	NM_001195090	217356.0	Mm.116675	NM_181856	ENSMUSG00000050106	Tmc8	EVIN2|Ever2|mFLJ00400	transmembrane channel-like gene family 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-103323577-4	chr15	103323476	103323676	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356627, intron 2 of 7)	CpG	10762.0	NM_001356627	29813.0	Mm.14099	NM_013866	ENSMUSG00000000552	Zfp385a	Hzf|Zfp385|Znf385a	zinc finger protein 385A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-82752766-1	chr6	82752666	82752866	+	608.0	f0_balb.idr	intron (NM_013820, intron 2 of 17)	intron (NM_013820, intron 2 of 17)	21688.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	2.51734755142818	1.91501869622113	1.06211506442202	1.04084460248221	2.27916776168999	1.77202444522697	1.06806641754198	2.32495210577377	0.368101778658175	0.764779867359617	0.998431161219273
Merged-chr18-34935174-2	chr18	34935074	34935274	+	703.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3171.0	NM_144866	225363.0	Mm.329353	NM_144866	ENSMUSG00000024360	Etf1	AI463371|D6Ertd109e|ERF|ERF1|SUP45L1|TB3-1	eukaryotic translation termination factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-95014299-3	chr8	95014193	95014393	+	888.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001198894)	TTS (NM_001198894)	-3399.0	NM_173036	54672.0	Mm.27995	NM_173036	ENSMUSG00000060470	Adgrg3	A030001G24Rik|AW214383|Gpr97|Pb1|Pb99	adhesion G protein-coupled receptor G3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-58517423-3	chr3	58517323	58517523	+	730.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8398.0	NM_001005509	229317.0	Mm.21617	NM_001005509	ENSMUSG00000027810	Eif2a	D030048D22|D3Ertd194e	eukaryotic translation initiation factor 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167671233-2	chr2	167671133	167671333	+	847.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9689.0	NM_145538	407243.0	Mm.4863	NM_145538	ENSMUSG00000090213	Tmem189	AI840826|Kua	transmembrane protein 189	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-58955728-3	chr9	58955621	58955821	+	806.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008684, intron 7 of 28)	B3|SINE|B2	80720.0	NM_001042752	18007.0	Mm.42249	NM_008684	ENSMUSG00000032340	Neo1	2610028H22Rik|AI327052|D930014N22Rik|Igdcc2	neogenin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126437082-2	chr7	126436982	126437182	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030566, intron 3 of 12)	intron (NM_030566, intron 3 of 12)	8315.0	NM_030566	70314.0	Mm.35467	NM_030566	ENSMUSG00000030727	Rabep2	2610011A08Rik|AI462746|Fra	rabaptin, RAB GTPase binding effector protein 2	protein-coding	1.34548689365958	0.83634429700964	1.5844085570912	1.71953757457969	1.4584699526389	0.839395596072162	0.825706250796527	1.43347031728094	-0.889966779889629	0.527603897057119	0.948864528363842
Merged-chr1-7114088-4	chr1	7113983	7114183	+	924.1083369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183028, intron 1 of 5)	MLTR14|LTR|ERV1	25163.0	NM_183028	319263.0	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-44243467-4	chr16	44243363	44243563	+	974.591675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198034, intron 24 of 24)	intron (NM_198034, intron 24 of 24)	70066.0	NM_001029889	207806.0	Mm.310566	NM_001029889	ENSMUSG00000068284	Usf3	5530400K22Rik|Gm1779|Gm608|mKIAA2018	upstream transcription factor family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-44970313-2	chr4	44970213	44970413	+	649.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11081.0	NM_080289	76238.0	Mm.196574	NM_080289	ENSMUSG00000035637	Grhpr	1110059D05Rik|6430629L09Rik|Glxr	glyoxylate reductase/hydroxypyruvate reductase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-33486937-2	chr2	33486837	33487037	+	818.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18405.0	NM_001355612	71834.0	Mm.44186	NM_027947	ENSMUSG00000026788	Zbtb43	1700010E06Rik|Zfp297b|mKIAA0414	zinc finger and BTB domain containing 43	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-7129481-4	chr15	7129398	7129598	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113386)	promoter-TSS (NM_001113386)	-74.0	NM_001113386	16880.0	Mm.149720	NM_013584	ENSMUSG00000054263	Lifr	A230075M04Rik|AW061234|LIF	leukemia inhibitory factor receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-17615975-4	chr6	17615891	17616091	+	827.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21019.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	-1.22315906685268	-1.19557143632602	-1.20673282037136	-0.55836125556573	-1.22265483704505	-1.19315271784257	-1.20420612767407	-1.21425999345206	-2.67891099987134	0.437057736398543	1
Merged-chr1-86260175-2	chr1	86260075	86260275	+	676.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030184, intron 22 of 24)	MTE2a|LTR|ERVL-MaLR	-43046.0	NM_145222	227327.0	Mm.86467	NM_145222	ENSMUSG00000079445	B3gnt7	C330001H22Rik|beta-3GnT7	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-158076829-4	chr3	158076740	158076940	+	971.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40158.0	NM_001289524	67144.0	Mm.358704	NM_024194	ENSMUSG00000063052	Lrrc40	2610040E16Rik|AI837674	leucine rich repeat containing 40	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-98233017-3	chr6	98232914	98233114	+	654.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	109740.0	NM_001128092	330390.0	Mm.484161	NM_001128092	ENSMUSG00000090667	Gm765	-	predicted gene 765	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-69509293-2	chr12	69509193	69509393	+	837.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33743.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-60997653-2	chr9	60997553	60997753	+	845.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-19416.0	NR_040767	330956.0	Mm.207985	NR_040767	ENSMUSG00000111290	Gm5122	A430102L10	predicted gene 5122	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-5375738-3	chr12	5375637	5375837	+	941.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015579)	promoter-TSS (NR_015579)	-55.0	NM_001164493	208439.0	Mm.388281	NM_001164493	ENSMUSG00000020627	Klhl29	A230106N14Rik|Gm68|Kbtbd9|mKIAA1921	kelch-like 29	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-49086982-4	chr11	49086816	49087016	+	826.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271676)	promoter-TSS (NM_001271676)	-101.0	NM_001271676	15953.0	Mm.24769	NM_008330	ENSMUSG00000078920	Ifi47	47kDa|IRG-47|Ifggc1|Igrd|Iigp4|Iipg4|Irgd	interferon gamma inducible protein 47	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-134852610-8	chr4	134852494	134852694	+	937.3229369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355499, intron 1 of 11)	CpG	751.0	NM_001355501	66146.0	Mm.99793	NM_025382	ENSMUSG00000028826	Tmem57	1110007C24Rik|9230118A01Rik|AI317300|AI606104|C61|Maco1	transmembrane protein 57	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100373506-2	chr11	100373406	100373606	+	547.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010593, intron 11 of 13)	intron (NM_010593, intron 11 of 13)	-17365.0	NM_010404	15114.0	Mm.281700	NM_010404	ENSMUSG00000006930	Hap1	HAP-1	huntingtin-associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59280022-2	chr15	59279922	59280122	+	829.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2c|LINE|L2	-26926.0	NR_045613	100416830.0	Mm.490788	NR_045613	ENSMUSG00000098528	Zfp572	4930472F24Rik	zinc finger protein 572	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-40883429-4	chr10	40883341	40883541	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031877)	promoter-TSS (NM_031877)	-93.0	NM_031877	83767.0	Mm.41353	NM_031877	ENSMUSG00000019831	Wasf1	AI195380|AI838537|Scar|WAVE|WAVE-1	WAS protein family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33535143-3	chr16	33535039	33535239	+	698.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083902, intron 2 of 11)	intron (NM_001083902, intron 2 of 11)	16544.0	NM_001083902	171286.0	Mm.35253	NM_134251	ENSMUSG00000035506	Slc12a8	CCC9|E330020C02Rik	solute carrier family 12 (potassium/chloride transporters), member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91362862-3	chr16	91362789	91362989	+	803.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9894.0	NM_010509	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-14383358-2	chr9	14383258	14383458	+	953.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2116.0	NM_028013	71946.0	Mm.41423	NM_028013	ENSMUSG00000037419	Endod1	2210414F18Rik|2310067E08Rik|C85344	endonuclease domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-40267876-4	chr4	40267771	40267971	+	951.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134097, intron 2 of 2)	intron (NM_134097, intron 2 of 2)	-1708.0	NM_001349093	100504309.0	Mm.392019	NM_001349093		Smim27	2010003O02Rik|Toporsos	small integral membrane protein 27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-46857706-4	chr17	46857573	46857773	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20A4|LTR|ERVK	-26260.0	NM_001100452	210982.0	Mm.37642	NM_001100452	ENSMUSG00000036568	Bicral	Gltscr1l|mKIAA0240	BRD4 interacting chromatin remodeling complex associated protein like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102432914-4	chr12	102432815	102433015	+	966.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011175, intron 1 of 13)	intron (NM_011175, intron 1 of 13)	6898.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-91716905-4	chr7	91716813	91717013	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011807, intron 2 of 22)	intron (NM_011807, intron 2 of 22)	-345481.0	NM_001243046	23859.0	Mm.147213	NM_011807	ENSMUSG00000052572	Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|Gm21505|PSD93	discs large MAGUK scaffold protein 2	protein-coding	3.26660885217119	3.24050482504251	1.9323601548762	3.04303235540424	3.63128661101337	2.63609184117609	3.05613226573343	3.69669131093687	0.599421858331781	0.374500486416456	0.86721387654551
Merged-chr1-153802716-5	chr1	153802642	153802842	+	823.133362	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001243223, intron 13 of 20)	intron (NM_001243223, intron 13 of 20)	41399.0	NM_001243223	240816.0	Mm.329340	NM_001243223	ENSMUSG00000042641	Rgsl1	4930415K13Rik|Gm202|Rgsl2	regulator of G-protein signaling like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-99929427-4	chr4	99929319	99929519	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028132)	promoter-TSS (NM_028132)	-32.0	NM_028132	72157.0	Mm.217764	NM_028132	ENSMUSG00000025791	Pgm2	2610020G18Rik|AA407108|AI098105|Pgm-2|Pgm1	phosphoglucomutase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-25485078-2	chr14	25485037	25485237	+	734.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	URR1B|DNA|hAT-Charlie	25952.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46142035-2	chr8	46141935	46142135	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-17889.0	NM_207213	102141.0	Mm.267258	NM_207213	ENSMUSG00000038291	Snx25	AI661919|Gm1699|Gm173|Sbbi31	sorting nexin 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-5797324-2	chr2	5797161	5797361	+	650.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133837, intron 11 of 12)	intron (NM_133837, intron 11 of 12)	-47773.0	NM_016918	53893.0	Mm.251904	NM_016918	ENSMUSG00000025817	Nudt5	-	nudix (nucleoside diphosphate linked moiety X)-type motif 5	protein-coding	-0.017672587407163	0.00281662279736342	0.720697424421786	-0.0090178870569611	-0.016379654187843	0.00431175623435667	0.196104639802911	0.861677180534711	0.596021994626365	0.787116861270131	1
Merged-chr7-43443509-4	chr7	43443403	43443603	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026695)	promoter-TSS (NM_026695)	-569.0	NM_026695	110826.0	Mm.30200	NM_026695	ENSMUSG00000004610	Etfb	0610009I16Rik|2810441H06Rik	electron transferring flavoprotein, beta polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-57906004-4	chr15	57905894	57906094	+	703.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6205.0	NM_001081396	210544.0	Mm.390835	NM_199300	ENSMUSG00000022364	Tbc1d31	4B3|D330013L20Rik|Gm85|Wdr67	TBC1 domain family, member 31	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-58918509-3	chr6	58918406	58918606	+	712.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361966, intron 25 of 25)	intron (NM_001361966, intron 25 of 25)	-11380.0	NM_021432	58243.0	Mm.389747	NM_021432	ENSMUSG00000055430	Nap1l5	1110020M21Rik	nucleosome assembly protein 1-like 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125350208-3	chr6	125350067	125350267	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011609, intron 1 of 9)	intron (NM_011609, intron 1 of 9)	444.0	NM_011609	21937.0	Mm.1258	NM_011609	ENSMUSG00000030341	Tnfrsf1a	CD120a|FPF|TNF-R|TNF-R-I|TNF-R1|TNF-R55|TNF-alphaR1|TNFAR|TNFR60|TNFRI|TNFRp55|TNFalpha-R1|Tnfr-2|Tnfr1|p55|p55-R	tumor necrosis factor receptor superfamily, member 1a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-35175193-2	chr2	35175093	35175293	+	612.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_012018, exon 40 of 44)	exon (NM_012018, exon 40 of 44)	25927.0	NM_026697	68365.0	Mm.198264	NM_026697	ENSMUSG00000026878	Rab14	0610030G24Rik|2810475J17Rik|A830021G03Rik|AI314285|AI649155|D030017L14Rik	RAB14, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127614699-4	chr7	127614571	127614771	+	846.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177226)	promoter-TSS (NM_177226)	196.0	NR_155452	320683.0	Mm.156718	NM_177226	ENSMUSG00000045639	Zfp629	9330199A09Rik|Znf629	zinc finger protein 629	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-106220255-1	chr9	106220155	106220355	+	733.0	f1_balb.idr	Intergenic	MLTR18D_MM|LTR|ERVK	-2343.0	NM_031178	81897.0	Mm.44889	NM_031178	ENSMUSG00000045322	Tlr9	-	toll-like receptor 9	protein-coding	1.89453383436036	2.13223656037826	1.26435743164566	2.24432641148939	2.82052959529369	1.30367269765398	2.43946959332315	2.6275525257729	1.12972826941749	0.260411364655093	0.761433522290449
Merged-chr3-100993865-4	chr3	100993756	100993956	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001167906, exon 9 of 9)	exon (NM_001167906, exon 9 of 9)	-24193.0	NM_001013026	74044.0	Mm.270961	NM_001013026	ENSMUSG00000033222	Ttf2	4632434F22Rik|8030447N19|AV218430	transcription termination factor, RNA polymerase II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-54908468-4	chr18	54908380	54908580	+	864.6124880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360787, intron 2 of 8)	intron (NM_001360787, intron 2 of 8)	81700.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-96477425-4	chr7	96477344	96477544	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011858, intron 3 of 32)	intron (NM_011858, intron 3 of 32)	-135480.0	NR_046043	670727.0	Mm.421352	NR_046043	ENSMUSG00000085751	Gm15412	-	predicted gene 15412	ncRNA	5.74379112239382	5.83421856525329	5.72073221231342	5.42913637851628	5.92130765091508	6.19089581091362	5.54353372738368	6.10280984498019	0.302184218142279	0.229018718712451	0.72208302043938
Merged-chr6-108505504-3	chr6	108505410	108505610	+	728.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 53 of 61)	intron (NM_010585, intron 53 of 61)	15767.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-83053950-4	chr3	83053882	83054082	+	573.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1556.0	NM_016784	53317.0	Mm.286349	NM_016784	ENSMUSG00000027998	Plrg1	AA958940|C80566|Tango4	pleiotropic regulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-5740605-4	chr18	5740462	5740662	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360982, intron 2 of 7)	L1MD2|LINE|L1	147915.0	NM_001360981	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	4.99380450024192	3.97762686445102	5.00546316691161	4.56800186190208	4.88783729733852	4.007622390986	4.92932858386015	4.44881402006264	-0.0988363187609954	0.803810058319609	0.998431161219273
Merged-chr2-141437723-2	chr2	141437623	141437823	+	693.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013802, intron 5 of 18)	L1_Mus3|LINE|L1	-766247.0	NM_178382	71436.0	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26239060-2	chr17	26238960	26239160	+	655.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001206335, intron 1 of 12)	B1_Mus1|SINE|Alu	5182.0	NM_207217	106581.0	Mm.28844	NM_207217	ENSMUSG00000024187	Fam234a	Itfg3	family with sequence similarity 234, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-77335239-3	chr11	77335138	77335338	+	825.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177710, intron 2 of 14)	MTD|LTR|ERVL-MaLR	-13042.0	NM_001291190	237860.0	Mm.440381	NM_177710	ENSMUSG00000037926	Ssh2	SSH-2|SSH-2L|mSSH-2L	slingshot protein phosphatase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-64342243-3	chr7	64342142	64342342	+	712.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	31853.0	NM_177893	330554.0	Mm.236510	NM_177893	ENSMUSG00000033458	Fan1	6030441H18Rik|Mtmr15|mFAN1	FANCD2/FANCI-associated nuclease 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-91711805-2	chr6	91711705	91711905	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009320, intron 2 of 14)	intron (NM_009320, intron 2 of 14)	27738.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-32278266-2	chr4	32278166	32278366	+	563.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-139169.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135781774-2	chr5	135781674	135781874	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008617, intron 1 of 8)	intron (NM_008617, intron 1 of 8)	3125.0	NM_008617	17448.0	Mm.297096	NM_008617	ENSMUSG00000019179	Mdh2	MDH|Mdh-2|Mor-1|Mor1	malate dehydrogenase 2, NAD (mitochondrial)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88483889-3	chr3	88483784	88483984	+	874.388855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_019390, exon 9 of 10)	exon (NM_019390, exon 9 of 10)	9428.0	NM_019390	16905.0	Mm.243014	NM_019390	ENSMUSG00000028063	Lmna	Dhe	lamin A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124935933-2	chr6	124935833	124936033	+	577.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001170341, exon 9 of 9)	3' UTR (NM_001170341, exon 9 of 9)	4545.0	NM_001170341	30853.0	Mm.29737	NM_145385	ENSMUSG00000030120	Mlf2	AI256856|AU018944|C77284	myeloid leukemia factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-83442448-2	chr17	83442348	83442548	+	655.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357886, intron 7 of 21)	intron (NM_001357886, intron 7 of 21)	71885.0	NM_009187	20463.0	Mm.30072	NM_009187	ENSMUSG00000024248	Cox7a2l	COX7AR|COX7RP|EB1|SIG-81|SIG81|Silg81	cytochrome c oxidase subunit VIIa polypeptide 2-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-97383655-4	chr7	97383558	97383758	+	920.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199035, intron 7 of 12)	intron (NM_199035, intron 7 of 12)	12041.0	NM_199035	381903.0	Mm.279683	NM_199035	ENSMUSG00000035704	Alg8	AI447372|Gm1089	asparagine-linked glycosylation 8 (alpha-1,3-glucosyltransferase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-37032940-1	chr8	37032840	37033040	+	559.0	f1_balb.idr	Intergenic	Intergenic	-8702.0	NR_126063	414128.0	Mm.450976	NR_126063	ENSMUSG00000110242	G630064G18Rik	-	RIKEN cDNA G630064G18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-50126994-2	chr18	50126861	50127061	+	703.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1240.0	NM_008292	15488.0	Mm.277857	NM_008292	ENSMUSG00000024507	Hsd17b4	17-beta-HSD|17[b]-HSD|DBP|MFE-2|MFP2|MPF-2|Mfp-2|perMFE-2	hydroxysteroid (17-beta) dehydrogenase 4	protein-coding	1.71291159253202	0.674548782417481	0.658018236051103	1.45885835156261	0.996218407415648	0.678211082980601	0.66170518946325	2.0574347661049	0.146298755217608	0.925468965002525	0.998431161219273
Merged-chr18-50029975-4	chr18	50029892	50030092	+	949.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360935)	promoter-TSS (NM_001360935)	-992.0	NM_001360935	106869.0	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-121707319-2	chr9	121707219	121707419	+	676.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-2290.0	NM_001164562	215474.0	Mm.31421	NM_178677	ENSMUSG00000061536	Sec22c	4932412K21|5930407I15Rik|C530046H07|Sec22l3	SEC22 homolog C, vesicle trafficking protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-70824659-4	chr6	70824561	70824761	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19854.0	NM_010121	13666.0	Mm.247167	NM_010121	ENSMUSG00000031668	Eif2ak3	Pek|Perk	eukaryotic translation initiation factor 2 alpha kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-102283825-3	chr15	102283724	102283924	+	951.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4368.0	NM_134100	106073.0	Mm.287740	NM_134100	ENSMUSG00000045665	Mfsd5	AA409375|AW556797|D15Mgi27	major facilitator superfamily domain containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-131316607-1	chr6	131316507	131316707	+	702.0	f0_balb.idr	Intergenic	Intergenic	-2780.0	NM_172891	243659.0	Mm.20114	NM_172891	ENSMUSG00000032899	Styk1	9130025L13|AI326477|Nok	serine/threonine/tyrosine kinase 1	protein-coding	-0.506519029184394	-0.492444172671984	-0.497033660802826	-0.321386309644389	-0.505634616060369	0.39391447259918	-0.49601963177222	-0.318395585152177	2.7811691750531	0.267504445371855	1
Merged-chr2-155295705-2	chr2	155295608	155295808	+	906.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001004721, intron 10 of 11)	intron (NM_001004721, intron 10 of 11)	19344.0	NR_046364	66734.0	Mm.196239	NM_025735	ENSMUSG00000027602	Map1lc3a	1010001H21Rik|4922501H04Rik|LC3|LC3a	microtubule-associated protein 1 light chain 3 alpha	protein-coding	2.29159114217184	2.08620565976433	3.00544784219026	3.34714607050871	1.02365683252328	1.15375130098241	2.02323533610376	1.07845527581459	-3.49457854288627	0.00149941936574076	0.0270351543770096
Merged-chr1-86300629-2	chr1	86300529	86300729	+	567.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2592.0	NM_145222	227327.0	Mm.86467	NM_145222	ENSMUSG00000079445	B3gnt7	C330001H22Rik|beta-3GnT7	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-48042895-4	chr4	48042816	48043016	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2389.0	NM_015743	18124.0	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65124020-3	chr9	65123920	65124120	+	730.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_020043, exon 7 of 20)	exon (NM_020043, exon 7 of 20)	-17134.0	NM_008988	19289.0	Mm.41529	NM_008988	ENSMUSG00000032394	Igdcc3	2810401C09Rik|AI851425|Punc|WI-14920	immunoglobulin superfamily, DCC subclass, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-116263693-2	chr6	116263593	116263793	+	594.200012	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001309446)	promoter-TSS (NM_001309446)	-526.0	NM_001309446	67492.0	Mm.272772	NM_001081317	ENSMUSG00000042213	Zfand4	Anubl1	zinc finger, AN1-type domain 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-76443916-2	chr10	76443816	76444016	+	767.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1004.0	NM_001282992	18541.0	Mm.251794	NM_008787	ENSMUSG00000001151	Pcnt	AW476095|C86676|KEN|Pcnt2|kendrin|m239Asp|m275Asp	pericentrin (kendrin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-8979203-3	chr4	8979155	8979355	+	685.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4|LINE|L1	227931.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	1.85143471590051	1.05858760933364	2.30428086161884	2.1500896863614	1.64963591412547	1.06366262405958	1.04074285074752	2.16223621996208	-0.963674617974719	0.434722635374443	0.906885738823907
Merged-chr8-13624186-4	chr8	13624073	13624273	+	946.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 2 of 23)	intron (NM_009025, intron 2 of 23)	53414.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-89354044-4	chr4	89353929	89354129	+	992.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132431, intron 2 of 9)	intron (NR_132431, intron 2 of 9)	-42997.0	NM_007670	12579.0	Mm.423094	NM_007670	ENSMUSG00000073802	Cdkn2b	AV083695|INK4b|MTS2|p15|p15(INK4b)|p15INK4b	cyclin dependent kinase inhibitor 2B	protein-coding	1.05644315670024	1.52402328071174	0.906566983310887	1.55463456630017	1.22329134139318	2.02230828827934	1.94550279169236	1.10739429653669	1.19818875730512	0.330539072382231	0.83197671091297
Merged-chr1-191248666-4	chr1	191248548	191248748	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24194.0	NR_151547	100504360.0	Mm.16927	NM_001033188		D730003I15Rik	AU020850	RIKEN cDNA D730003I15 gene	ncRNA	5.26239598847868	5.87221141716917	5.47276998695952	6.15578104888596	5.11000945660903	5.78010075970621	4.76082967133993	5.5762656981222	-0.424260255913124	0.176987862991868	0.646570188136342
Merged-chr13-54796850-2	chr13	54796750	54796950	+	664.125	f1_balb.idr|f1_c57bl6.idr	TTS (NM_028841)	TTS (NM_028841)	7445.0	NM_028841	74257.0	Mm.32883	NM_028841	ENSMUSG00000025875	Tspan17	2210021G21Rik|AI047581|Fbxo23|Tm4sf17	tetraspanin 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-83870965-4	chr18	83870844	83871044	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	215618.0	NM_001081300	110796.0	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-8982547-4	chr3	8982486	8982686	+	973.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	-18440.0	NM_001025261	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-87597334-2	chr6	87597234	87597434	+	734.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB4|LINE|L1	-6591.0	NM_021381	58182.0	Mm.333226	NM_021381	ENSMUSG00000049409	Prokr1	EG-VEGFR1|Gpr73|Pk-r1|Pkr1	prokineticin receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-3733452-3	chr16	3733375	3733575	+	678.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(GA)n|Simple_repeat|Simple_repeat	-10624.0	NM_148924	74120.0	Mm.29081	NM_148924	ENSMUSG00000022529	Zfp263	1200014J04Rik|AI326880|AU020888|NT2|mFPM315	zinc finger protein 263	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-18849501-4	chr8	18849376	18849576	+	839.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026792, intron 1 of 7)	intron (NM_026792, intron 1 of 7)	3197.0	NM_026792	52123.0	Mm.24117	NM_026792	ENSMUSG00000031467	Agpat5	1110013A05Rik|D8Ertd319e	1-acylglycerol-3-phosphate O-acyltransferase 5 (lysophosphatidic acid acyltransferase, epsilon)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-38227365-2	chr3	38227265	38227465	+	784.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19246.0	NR_040541	71342.0	Mm.410782	NR_040541	ENSMUSG00000106002	5430434I15Rik	-	RIKEN cDNA 5430434I15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30869439-2	chr7	30869339	30869539	+	759.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001043317, intron 11 of 15)	intron (NM_001043317, intron 11 of 15)	-7969.0	NM_194057	233081.0	Mm.425422	NM_194057	ENSMUSG00000044453	Ffar1	Gpr40	free fatty acid receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25816114-2	chr7	25816014	25816214	+	601.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_028775, intron 1 of 8)	intron (NM_028775, intron 1 of 8)	416.0	NM_028775	74134.0	Mm.275188	NM_028775	ENSMUSG00000040703	Cyp2s1	1200011C15Rik|AU041727|C79779	cytochrome P450, family 2, subfamily s, polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140607249-4	chr5	140607164	140607364	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008494)	promoter-TSS (NM_008494)	-77.0	NM_008494	16848.0	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-4501188-2	chr2	4501088	4501288	+	988.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 5 of 23)	RSINE1|SINE|B4	-58566.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-16220764-3	chr2	16220658	16220858	+	702.472229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310455, intron 37 of 38)	intron (NM_001310455, intron 37 of 38)	-135546.0	NM_026162	67448.0	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133062226-1	chr4	133062126	133062326	+	727.0	f1_balb.idr	exon (NM_146155, exon 6 of 7)	exon (NM_146155, exon 6 of 7)	50720.0	NM_146155	230793.0	Mm.31816	NM_146155	ENSMUSG00000037692	Ahdc1	D030015G18Rik	AT hook, DNA binding motif, containing 1	protein-coding	0.246970465305293	-0.119513048172305	-0.124718396222832	0.181201634026345	-0.134429250508041	-0.118340611718041	-0.12356972651031	0.689323821928144	0.644490318789739	0.780627641926702	1
Merged-chr4-19879876-3	chr4	19879779	19879979	+	811.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175406, intron 7 of 7)	intron (NM_175406, intron 7 of 7)	42687.0	NM_175406	242341.0	Mm.19298	NM_175406	ENSMUSG00000028238	Atp6v0d2	1620401A02Rik|AI324824|V-ATPase	ATPase, H+ transporting, lysosomal V0 subunit D2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-52424805-4	chr12	52424691	52424891	+	977.616699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55818.0	NR_136881	102638611.0	Mm.363799	NR_136881	ENSMUSG00000111982	Gm35135	-	predicted gene, 35135	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-69092998-5	chr8	69092856	69093056	+	787.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007509, intron 1 of 13)	intron (NM_007509, intron 1 of 13)	-3734.0	NM_153054	110877.0	Mm.19301	NM_153054	ENSMUSG00000036330	Slc18a1	4832416I10Rik|Vat1|Vmat1	solute carrier family 18 (vesicular monoamine), member 1	protein-coding	0.248524237342274	-0.258166347350441	-0.261954473597534	-0.26486208529652	0.083775467881335	-0.075045576295618	-0.0944920789159715	-0.264355076117109	0.224978100701472	0.922948427070617	1
Merged-chr11-118744406-2	chr11	118744306	118744506	+	795.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001024931, intron 2 of 14)	intron (NM_001024931, intron 2 of 14)	16635.0	NM_001285438	52897.0	Mm.341103	NM_001024931	ENSMUSG00000025576	Rbfox3	Fox-3|Hrnbp3|NeuN|Neuna60	RNA binding protein, fox-1 homolog (C. elegans) 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-89144232-2	chr15	89144132	89144332	+	592.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_011161, exon 11 of 12)	exon (NM_011161, exon 11 of 12)	-3529.0	NM_013871	29857.0	Mm.38343	NM_013871	ENSMUSG00000022610	Mapk12	AW123708|Erk6|P38gamma|Prkm12|Sapk3	mitogen-activated protein kinase 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44866483-4	chr7	44866359	44866559	+	938.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133949, intron 5 of 11)	intron (NM_133949, intron 5 of 11)	3329.0	NM_133949	84113.0	Mm.42855	NM_133949	ENSMUSG00000038502	Ptov1	1110030G05Rik|AU041779|Gcap3	prostate tumor over expressed gene 1	protein-coding	2.29138590450402	1.2328163256748	2.09175042546764	1.18393572531244	1.82429559814646	2.30430594157981	2.51255462626184	2.04195543766292	0.981636135155165	0.352992420014434	0.852914941614096
Merged-chr17-10354969-2	chr17	10354869	10355069	+	619.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER44B|DNA|TcMar-Tigger	30367.0	NR_045461	76634.0	Mm.491052	NR_045461	ENSMUSG00000099384	1700110C19Rik	-	RIKEN cDNA 1700110C19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-70035653-2	chr7	70035553	70035753	+	575.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	302169.0	NR_131145	624549.0	Mm.116344	NR_131144	ENSMUSG00000109097	Gm29683	Gm44536	predicted gene, 29683	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-158061131-4	chr3	158061014	158061214	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359763, intron 10 of 13)	intron (NM_001359763, intron 10 of 13)	24432.0	NM_001289524	67144.0	Mm.358704	NM_024194	ENSMUSG00000063052	Lrrc40	2610040E16Rik|AI837674	leucine rich repeat containing 40	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-8712686-3	chr15	8712574	8712774	+	791.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1867.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-19601778-4	chr8	19601657	19601857	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	106660.0	NM_139220	246080.0	Mm.207067	NM_139220	ENSMUSG00000037790	Defb7	BD-7|Defb15	defensin beta 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-56747553-3	chr19	56747461	56747661	+	837.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	25189.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-96487639-2	chr9	96487539	96487739	+	800.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13B1|LTR|ERVK	-8964.0	NM_001311135	19823.0	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-159232979-4	chr1	159232914	159233114	+	985.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011931, intron 1 of 19)	intron (NM_011931, intron 1 of 19)	814.0	NM_011931	26374.0	Mm.328135	NM_011931	ENSMUSG00000040782	Cop1	AI316802|C80879|Rfwd2	COP1, E3 ubiquitin ligase	protein-coding	1.17082389892248	0.794794877658842	0.783376746804128	1.35121035527167	1.06072276966791	1.33323787628677	1.40753997269788	1.46280381836281	1.17828753954836	0.389587552830337	0.87873257153623
Merged-chr8-111660510-2	chr8	111660374	111660574	+	776.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011742, intron 2 of 3)	MERVL_2A-int|LTR|ERVL	17031.0	NM_011742	22640.0	Mm.4184	NM_011742	ENSMUSG00000055835	Zfp1	Fnp-1|Zfp-1|mkr-1	zinc finger protein 1	protein-coding	0.2232785100268	0.24740049377511	0.96090425342285	0.233475994804632	0.844825450869264	0.249158274400374	0.241298514170949	1.01556208736918	0.936990131134114	0.646152341416196	1
Merged-chr7-143483124-2	chr7	143483024	143483224	+	923.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001042760, intron 5 of 10)	intron (NM_001042760, intron 5 of 10)	8008.0	NM_001042760	18400.0	Mm.271740	NM_008767	ENSMUSG00000000154	Slc22a18	AW260131|BWR1A|BWSCR1A|HET|ITM|Impt1|Orctl2|Slc22a1l|TSSC5|p45-BWR1A	solute carrier family 22 (organic cation transporter), member 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-88840223-4	chr4	88840132	88840332	+	897.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1584.0	NM_010504	15967.0	Mm.377088	NM_010504	ENSMUSG00000070904	Ifna4	Ifa4	interferon alpha 4	protein-coding	3.38425025820803	2.81175043241153	3.21380935064632	1.52405423625092	1.18078045370224	1.64964885321914	3.30624099218658	1.76700052652128	-1.15422654201827	0.237853273197984	0.734370450805304
Merged-chr11-100695142-3	chr11	100695054	100695254	+	810.466675	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_030150, exon 13 of 13)	3' UTR (NM_030150, exon 13 of 13)	9117.0	NM_030150	80861.0	Mm.271830	NM_030150	ENSMUSG00000017830	Dhx58	B430001I08Rik|D11Lgp2e|LPG2|Lgp2|RLR-3	DEXH (Asp-Glu-X-His) box polypeptide 58	protein-coding	-0.643426114426009	-0.13603208644087	-0.63614878037246	-0.638886248565743	-0.642751148453361	-0.631796812660116	-0.635365850149794	-0.0959543066532267	0.158923990479681	0.956118735169945	1
Merged-chr17-56819715-2	chr17	56819615	56819815	+	749.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009056, intron 1 of 16)	intron (NM_009056, intron 1 of 16)	11293.0	NM_009056	19725.0	Mm.102	NM_009056	ENSMUSG00000024206	Rfx2	5430432H19Rik	regulatory factor X, 2 (influences HLA class II expression)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81141705-2	chr10	81141605	81141805	+	814.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010731, intron 1 of 2)	intron (NM_010731, intron 1 of 2)	5434.0	NM_010731	16969.0	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-75065312-2	chr8	75065212	75065412	+	750.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001136259, intron 13 of 15)	intron (NM_001136259, intron 13 of 15)	-28306.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132962209-2	chr4	132962109	132962309	+	816.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11886.0	NM_010208	14191.0	Mm.271665	NM_010208	ENSMUSG00000028874	Fgr	-	FGR proto-oncogene, Src family tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-61215979-1	chr18	61215879	61216079	+	583.0	f1_balb.idr	Intergenic	MTD|LTR|ERVL-MaLR	-4383.0	NM_007885	13521.0	Mm.24803	NM_007885	ENSMUSG00000034320	Slc26a2	Dtd|ST-OB	solute carrier family 26 (sulfate transporter), member 2	protein-coding	-1.53645105050735	-1.50512770740433	-1.51460014489938	-1.52238108709168	-1.25060007796668	-1.50307499068393	-1.36341110676307	-1.52098830215942	1.91856433096655	0.581453450570385	1
Merged-chr1-64194915-2	chr1	64194815	64195015	+	601.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-73526.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-14068872-2	chr13	14068772	14068972	+	750.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_194262, intron 2 of 23)	intron (NM_194262, intron 2 of 23)	5088.0	NM_198122	94246.0	Mm.439784	NM_194262	ENSMUSG00000039219	Arid4b	BCAA|BRCAA1|RBBP1L1|Rbp1l1|SAP180	AT rich interactive domain 4B (RBP1-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-154765846-4	chr2	154765721	154765921	+	998.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25289.0	NM_001139512	19383.0	Mm.221440	NM_023130	ENSMUSG00000027593	Raly	AI663842|Merc	hnRNP-associated with lethal yellow	protein-coding	2.34045065344911	3.61943503987535	3.82015273077959	3.40597868348825	2.36166921703363	3.08574037852894	3.37198052034491	3.18468002546186	-0.578313467162765	0.375058642282198	0.86815824889424
Merged-chr15-80705464-2	chr15	80705364	80705564	+	941.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(GAA)n|Simple_repeat|Simple_repeat	-5849.0	NM_144812	213988.0	Mm.131328	NM_144812	ENSMUSG00000047888	Tnrc6b	2700090M07Rik|A730065C02Rik|AI848765|D230019K20Rik	trinucleotide repeat containing 6b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-181493814-2	chr2	181493714	181493914	+	652.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_183181, exon 1 of 1)	exon (NM_183181, exon 1 of 1)	608.0	NM_183181	241850.0	Mm.87455	NM_183181	ENSMUSG00000055882	Abhd16b	1700095H12	abhydrolase domain containing 16B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135391975-2	chr5	135391875	135392075	+	701.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_148932, intron 2 of 12)	B1F|SINE|Alu	2571.0	NM_148932	107939.0	Mm.28399	NM_148932	ENSMUSG00000053293	Pom121	2610027A18Rik|C80273|mKIAA0618	nuclear pore membrane protein 121	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70700073-4	chr8	70699984	70700184	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010592, exon 1 of 1)	3' UTR (NM_010592, exon 1 of 1)	2345.0	NM_001286944	16478.0	Mm.419851	NM_010592	ENSMUSG00000071076	Jund	Jund1	jun D proto-oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128302552-2	chr10	128302452	128302652	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252327)	promoter-TSS (NM_001252327)	-783.0	NM_133992	103135.0	Mm.244183	NM_133992	ENSMUSG00000005682	Pan2	1200014O24Rik|AI047843|AW742773|Usp52|mKIAA0710	PAN2 poly(A) specific ribonuclease subunit	protein-coding	2.06122200855899	2.96764484713095	2.65472992184979	3.18859597537145	2.2240399222674	2.88310884127723	2.67535915754716	3.06066623621998	-0.0747484239251697	0.919091644487026	0.998431161219273
Merged-chr5-99377319-2	chr5	99377219	99377419	+	629.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 2 of 3)	intron (NR_030692, intron 2 of 3)	-124392.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-91298290-4	chr1	91298210	91298410	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016717)	promoter-TSS (NM_016717)	-28.0	NM_016717	50880.0	Mm.25724	NM_016717	ENSMUSG00000026307	Scly	9830169H08|A930015N15Rik|SCL|Scly1|Scly2	selenocysteine lyase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-69825050-2	chr14	69824950	69825150	+	998.099976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15357.0	NM_028560	73523.0	Mm.23509	NM_028526	ENSMUSG00000022085	Pebp4	PEBP-4	phosphatidylethanolamine binding protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-73020026-1	chr2	73019926	73020126	+	548.0	f0_balb.idr	Intergenic	Intergenic	-39580.0	NM_001018042	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-31250391-1	chr10	31250291	31250491	+	543.0	f1_balb.idr	Intergenic	Intergenic	-63014.0	NM_027168	69692.0	Mm.245537	NM_027168	ENSMUSG00000000295	Hddc2	2310057G13Rik	HD domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-32185890-2	chr19	32185790	32185990	+	872.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 5 of 9)	intron (NM_144792, intron 5 of 9)	25123.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-35971671-3	chr8	35971572	35971772	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4_|SINE|ID	-88715.0	NR_046181	330737.0	Mm.381743	NR_046181	ENSMUSG00000109761	5430403N17Rik	5430403N17	RIKEN cDNA 5430403N17 gene	ncRNA	1.08516970199892	1.91609571754494	0.919394898707446	0.89998218578956	2.34694307160716	2.26831655843199	1.97691419332485	0.903419011905041	2.06148394008743	0.110415526809883	0.520793640554224
Merged-chr11-78399902-3	chr11	78399830	78400030	+	681.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022411, intron 9 of 11)	intron (NM_022411, intron 9 of 11)	5445.0	NR_003282	790911.0	Mm.457257	NR_003282	ENSMUSG00000085747	Slc13a2os	Gm11194	solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134262233-4	chr6	134262147	134262347	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 7 of 8)	intron (NM_001303102, intron 7 of 8)	-134082.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-143602262-2	chr7	143602162	143602362	+	720.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-2172.0	NM_013742	27267.0	Mm.125659	NM_013742	ENSMUSG00000010755	Cars	CA3	cysteinyl-tRNA synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-57521139-4	chr9	57521001	57521201	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007747)	promoter-TSS (NM_007747)	-131.0	NM_007747	12858.0	Mm.273403	NM_007747	ENSMUSG00000000088	Cox5a	AA959768|CcOX	cytochrome c oxidase subunit Va	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-116435459-4	chr12	116435380	116435580	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133762, intron 17 of 28)	Lx8|LINE|L1	30078.0	NM_133762	76044.0	Mm.491196	NM_133762	ENSMUSG00000042029	Ncapg2	5830426I05Rik|Luzp5|Mtb|mCAP-G2	non-SMC condensin II complex, subunit G2	protein-coding	3.97233942895846	4.12656281845594	4.67961162122755	4.06554662967105	3.51581313941043	3.77207358398073	3.73148688032437	3.76909151694446	-0.753661642691818	0.0960275058057746	0.48112667649959
Merged-chr13-73831550-2	chr13	73831450	73831650	+	650.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347535, intron 2 of 8)	intron (NM_001347535, intron 2 of 8)	16081.0	NM_028186	72293.0	Mm.45506	NM_028186	ENSMUSG00000021567	Nkd2	2210403L10Rik|AW212591|mNkd2	naked cuticle 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-90272115-2	chr1	90272015	90272215	+	547.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	68135.0	NM_007722	12778.0	Mm.6522	NM_007722	ENSMUSG00000044337	Ackr3	AW541270|CXC-R7|CXCR-7|Cmkor1|Cxcr7|RDC-1|Rdc1	atypical chemokine receptor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-57138204-3	chr19	57138110	57138310	+	664.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001103177, intron 4 of 21)	(TTTTG)n|Simple_repeat|Simple_repeat	-19186.0	NM_001103178	226251.0	Mm.217161	NM_178688	ENSMUSG00000025085	Ablim1	2210411C18Rik|2610209L21Rik|4833406P10Rik|9330196J19Rik|AV079770|AW060987|AW215784|Limab1|mKIAA0059	actin-binding LIM protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-118539886-1	chr2	118539786	118539986	+	552.0	f1_c57bl6.idr	intron (NM_001331221, intron 3 of 3)	intron (NM_001331221, intron 3 of 3)	4701.0	NR_138603	171543.0	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	2.46473853155712	3.56009134593467	2.89741801668948	2.81560258482134	2.69269042071683	2.79240049865815	3.10624093673328	1.79050714148549	-0.582541669056831	0.431549882818822	0.904679012727573
Merged-chr5-137600758-4	chr5	137600651	137600851	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001254762)	promoter-TSS (NM_001254762)	-43.0	NM_001254762	68929.0	Mm.41355	NM_030037	ENSMUSG00000037221	Mospd3	1190005J19Rik|5133401H10Rik|Gtig2|R124	motile sperm domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-103587873-4	chr3	103587770	103587970	+	981.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276676, intron 3 of 6)	intron (NM_001276676, intron 3 of 6)	11744.0	NM_001276681	54524.0	Mm.88818	NM_018800	ENSMUSG00000027849	Syt6	3110037A08Rik|AW048930|sytVI	synaptotagmin VI	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81261851-2	chr10	81261751	81261951	+	599.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001285854, exon 10 of 13)	exon (NM_001285854, exon 10 of 13)	4552.0	NM_001285853	17179.0	Mm.2918	NM_010768	ENSMUSG00000004933	Matk	CHK|HYL|Ntk|p56ntk	megakaryocyte-associated tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-34059965-4	chr6	34059844	34060044	+	921.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028886, intron 6 of 19)	intron (NM_028886, intron 6 of 19)	30496.0	NM_028886	74354.0	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5850369-4	chr19	5850258	5850458	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_026169)	TTS (NM_026169)	-4878.0	NR_003513	66961.0	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-75492108-4	chr10	75492039	75492239	+	944.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6B|LTR|ERVK	25242.0	NM_175133	68778.0	Mm.29382	NM_175133	ENSMUSG00000033416	Gucd1	1110038D17Rik	guanylyl cyclase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-130818119-2	chr4	130818019	130818219	+	603.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011520, intron 2 of 4)	intron (NM_011520, intron 2 of 4)	25582.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-74896508-4	chr15	74896439	74896639	+	757.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14835.0	NM_025929	67038.0	Mm.154566	NM_025929	ENSMUSG00000063522	2010109I03Rik	Ly6m	RIKEN cDNA 2010109I03 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-62932625-2	chr9	62932525	62932725	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019663, intron 2 of 13)	intron (NM_019663, intron 2 of 13)	48254.0	NM_019663	56469.0	Mm.431253	NM_019663	ENSMUSG00000032405	Pias1	2900068C24Rik|Ddxbp1|GBP	protein inhibitor of activated STAT 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115491826-4	chr11	115491685	115491885	+	980.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015807)	promoter-TSS (NM_015807)	29.0	NM_015807	50773.0	Mm.390379	NM_015807	ENSMUSG00000020736	Nt5c	Dnt|Dnt1|Umph-2|Umph2	5',3'-nucleotidase, cytosolic	protein-coding	1.20046412024805	0.721460399696846	1.19823943630436	1.55411289552947	1.1061368343286	0.723854193567236	1.20884351619985	0.884488682951563	-0.954226690845167	0.503575093407318	0.939787919021146
Merged-chr15-96666449-2	chr15	96666349	96666549	+	752.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx10|LINE|L1	-23536.0	NM_001166458	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-75067558-2	chr5	75067458	75067658	+	544.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8043.0	NM_133256	14843.0	Mm.218752	NM_133256	ENSMUSG00000035946	Gsx2	Gsh-2|Gsh2	GS homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-68196091-4	chr18	68196003	68196203	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172631, intron 3 of 5)	intron (NM_172631, intron 3 of 5)	-31843.0	NM_001357444	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-32681081-2	chr16	32680981	32681181	+	836.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347185, intron 5 of 6)	intron (NM_001347185, intron 5 of 6)	7927.0	NM_001289443	51789.0	Mm.251115	NM_016788	ENSMUSG00000022791	Tnk2	Ack|Ack-1|Ack1|Cdgip|Pyk1	tyrosine kinase, non-receptor, 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-112146051-2	chr12	112145951	112146151	+	607.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001097621)	promoter-TSS (NM_001097621)	-157.0	NM_001097621	668303.0	Mm.313104	NM_001097621	ENSMUSG00000021294	Kif26a	mKIAA1236	kinesin family member 26A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-116926818-2	chr14	116926718	116926918	+	563.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011821, intron 1 of 8)	CpG	1521.0	NM_011821	23888.0	Mm.440025	NM_011821	ENSMUSG00000058571	Gpc6	-	glypican 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-113381937-4	chr13	113381824	113382024	+	886.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	120920.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-42548722-2	chr1	42548622	42548822	+	546.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4B|LINE|L1	146103.0	NR_027826	66297.0	Mm.45203	NM_183252	ENSMUSG00000060424	Pantr1	2610017I09Rik|Pou3f3os|linc-Brn1a	POU domain, class 3, transcription factor 3 adjacent noncoding transcript 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-46531038-3	chr4	46530914	46531114	+	839.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029077, intron 2 of 5)	intron (NM_029077, intron 2 of 5)	-4887.0	NR_151695	105247126.0	Mm.477962	NR_151695		Gm16731	-	predicted gene, 16731	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-151572238-2	chr2	151572138	151572338	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145535)	promoter-TSS (NM_145535)	-385.0	NM_145535	228765.0	Mm.32068	NM_145535	ENSMUSG00000027456	Sdcbp2	-	syndecan binding protein (syntenin) 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19406104-2	chr7	19406004	19406204	+	958.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-2000.0	NM_001286039	232943.0	Mm.213403	NM_146182	ENSMUSG00000040714	Klc3	BC017147|Klct	kinesin light chain 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95530011-4	chr3	95529905	95530105	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021281, intron 2 of 7)	intron (NM_021281, intron 2 of 7)	3219.0	NM_001267695	13040.0	Mm.3619	NM_021281	ENSMUSG00000038642	Ctss	Cats	cathepsin S	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-72142104-4	chr1	72141994	72142194	+	754.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	70213.0	NM_001005423	381269.0	Mm.422636	NM_001005423	ENSMUSG00000039395	Mreg	Gm974|Wdt2|dsu	melanoregulin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-100111146-3	chr12	100111038	100111238	+	802.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-1193.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-19659134-3	chr2	19659044	19659244	+	878.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027715, exon 1 of 1)	exon (NM_027715, exon 1 of 1)	1082.0	NM_027715	71198.0	Mm.83981	NM_027715	ENSMUSG00000043415	Otud1	4933428L19Rik	OTU domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-132437114-1	chr5	132437014	132437214	+	607.333313	f0_balb.idr	intron (NM_177047, intron 1 of 19)	intron (NM_177047, intron 1 of 19)	105229.0	NM_177047	319974.0	Mm.409595	NM_177047	ENSMUSG00000029673	Auts2	2700063G02Rik|A730011F23Rik|D830032G16Rik	autism susceptibility candidate 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-5705046-3	chr2	5704945	5705145	+	684.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290374, intron 1 of 9)	intron (NM_001290374, intron 1 of 9)	9717.0	NM_001290374	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-108327822-4	chr6	108327720	108327920	+	998.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 4 of 61)	intron (NM_010585, intron 4 of 61)	114724.0	NM_010585	16438.0	Mm.227912	NM_010585	ENSMUSG00000030102	Itpr1	D6Pas2|Gm10429|IP3R 1|IP3R1|InsP3R|Ip3r|Itpr-1|P400|Pcp-1|Pcp1|insP3R1|opt|wblo	inositol 1,4,5-trisphosphate receptor 1	protein-coding	4.05168124535989	4.1239228383842	3.01506843655737	3.94387778697688	4.39794871012751	4.27261873196194	2.56494298628832	3.46774003921756	0.0163811603034128	0.977068512917941	0.998431161219273
Merged-chr13-44507254-4	chr13	44507146	44507346	+	696.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	67519.0	NR_045489	69491.0	Mm.392410	NR_045489	ENSMUSG00000098144	1700029N11Rik	-	RIKEN cDNA 1700029N11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102390128-4	chr12	102390004	102390204	+	876.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001161365, exon 10 of 10)	exon (NM_001161365, exon 10 of 10)	49709.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-95035593-2	chr9	95035493	95035693	+	569.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177909, intron 11 of 15)	intron (NM_177909, intron 11 of 15)	283764.0	NR_106116	102465763.0		NR_106116	ENSMUSG00000098251	Mir7656	Gm27614|mmu-mir-7656	microRNA 7656	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-75636960-3	chr2	75636825	75637025	+	556.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22334.0	NM_146130	229279.0	Mm.316306	NM_053263	ENSMUSG00000059005	Hnrnpa3	2410013L13Rik|2610209F03Rik|2610510D13Rik|Hnrpa3	heterogeneous nuclear ribonucleoprotein A3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127599619-4	chr10	127599503	127599703	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 6 of 88)	intron (NM_008512, intron 6 of 88)	21545.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-35950017-4	chr13	35949910	35950110	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Charlie1a|DNA|hAT-Charlie	-17896.0	NM_029628	76487.0	Mm.44745	NM_029628	ENSMUSG00000050423	Ppp1r3g	1600032L17Rik	protein phosphatase 1, regulatory (inhibitor) subunit 3G	protein-coding	2.43920647870784	2.73907482056677	2.23813461172571	2.48502252557432	2.08147311036113	1.63940201253552	1.3417321135822	2.40365390254684	-1.30388331091466	0.155841329868899	0.61104061299577
Merged-chr6-73726678-3	chr6	73726596	73726796	+	640.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-255675.0	NR_108032	73408.0	Mm.233629	NR_108032	ENSMUSG00000107408	1700065L07Rik	-	RIKEN cDNA 1700065L07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-91192055-4	chr15	91191949	91192149	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358967)	promoter-TSS (NM_001358967)	-42.0	NM_001358967	26874.0	Mm.295456	NM_011994	ENSMUSG00000055782	Abcd2	ABC39|ALDL1|ALDR|ALDRP	ATP-binding cassette, sub-family D (ALD), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99474672-4	chr15	99474602	99474802	+	940.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029236)	promoter-TSS (NM_029236)	28.0	NM_029236	75284.0	Mm.32826	NM_029236	ENSMUSG00000037525	Bcdin3d	4930556P03Rik|AV138748	BCDIN3 domain containing	protein-coding	3.17038010058804	4.11390069709266	3.15491319493522	4.07993052824794	3.61064658787457	2.74971579026359	2.47531362355399	3.78563492016955	-0.647469794843002	0.289925494667216	0.795360911821054
Merged-chr7-16923408-2	chr7	16923308	16923508	+	933.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_007590, intron 1 of 5)	intron (NM_007590, intron 1 of 5)	624.0	NM_007590	12315.0	Mm.288630	NM_007590	ENSMUSG00000019370	Calm3	CaMA|Cam3|Camc|R75142	calmodulin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-81167293-3	chr7	81167190	81167390	+	584.083313	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	intron (NM_001004184, intron 14 of 17)	B2_Mm2|SINE|B2	-46514.0	NM_008803	18584.0	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	3.05774271165429	3.52683690491217	3.89210297444157	4.21136454729515	3.16812999635092	2.5418039078166	3.34752863736324	2.68559333383631	-1.19699486937229	0.0449319855726977	0.304687620328501
Merged-chr2-142768948-3	chr2	142768844	142769044	+	881.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355123, intron 12 of 26)	MER2B|DNA|TcMar-Tigger	132520.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10949305-4	chr19	10949202	10949402	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023731)	promoter-TSS (NM_023731)	-36.0	NM_023731	108673.0	Mm.294908	NM_023731	ENSMUSG00000024732	Ccdc86	4933411H20Rik|6720480F16Rik|D19Ertd678e	coiled-coil domain containing 86	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-17862736-1	chr17	17862636	17862836	+	631.0	f1_balb.idr	Intergenic	Intergenic	-7548.0	NM_008215	15116.0	Mm.255701	NM_008215	ENSMUSG00000003665	Has1	HAS	hyaluronan synthase 1	protein-coding	2.74784753634831	2.75874740816164	1.50691785033655	2.80431946518621	2.77159344471632	2.31340923623527	3.90208523488394	3.08945674598314	1.08205013438023	0.166976519932788	0.633180874258405
Merged-chr11-117914413-2	chr11	117914313	117914513	+	698.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40887.0	NM_027919	71776.0	Mm.3200	NM_027919	ENSMUSG00000017713	Tha1	1300017K07Rik|GLY1	threonine aldolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-54070051-3	chr11	54069915	54070115	+	750.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019417)	promoter-TSS (NM_019417)	-998.0	NM_019417	30794.0	Mm.21830	NM_019417	ENSMUSG00000020388	Pdlim4	Ril	PDZ and LIM domain 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-75118967-2	chr15	75118867	75119067	+	801.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6996.0	NM_001099217	100041546.0	Mm.482110	NM_001099217	ENSMUSG00000022584	Ly6c2	Ly-6C.2|Ly-6C2	lymphocyte antigen 6 complex, locus C2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-78485474-4	chr1	78485388	78485588	+	885.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001278075, intron 1 of 17)	MLT1F2-int|LTR|ERVL-MaLR	3409.0	NR_102758	23874.0	Mm.17898	NM_011811	ENSMUSG00000026245	Farsb	C76708|Farsa|Farsl|Farslb|Frsb	phenylalanyl-tRNA synthetase, beta subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-26963542-2	chr2	26963442	26963642	+	613.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_207234, intron 1 of 7)	intron (NM_207234, intron 1 of 7)	844.0	NM_207234	227656.0	Mm.291874	NM_207234	ENSMUSG00000052406	Rexo4	Gm111|Rex4|Xpmc2h	REX4, 3'-5' exonuclease	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52041547-4	chr13	52041440	52041640	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55201.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-10402843-2	chr8	10402743	10402943	+	701.416687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001319151, intron 14 of 34)	intron (NM_001319151, intron 14 of 34)	248932.0	NM_001319151	244281.0	Mm.422761	NM_001081397	ENSMUSG00000039057	Myo16	BM140241|C230040D10Rik|Gm1105|NYAP3|mKIAA0865	myosin XVI	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-102615754-4	chr14	102615663	102615863	+	889.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	366869.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-108993997-2	chr13	108993897	108994097	+	871.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011056, intron 2 of 16)	intron (NM_011056, intron 2 of 16)	-330747.0	NR_030644	100124489.0		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-52061334-4	chr16	52061230	52061430	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033238, intron 3 of 17)	intron (NM_001033238, intron 3 of 17)	29781.0	NM_001033238	208650.0	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-62047799-2	chr18	62047699	62047899	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	94724.0	NM_172628	225608.0	Mm.262320	NM_172628	ENSMUSG00000045629	Sh3tc2	D430044G18Rik	SH3 domain and tetratricopeptide repeats 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-45644661-3	chr16	45644567	45644767	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145389, intron 2 of 5)	intron (NM_145389, intron 2 of 5)	9451.0	NM_145389	212998.0	Mm.97511	NM_145389	ENSMUSG00000033187	BC016579	-	cDNA sequence, BC016579	protein-coding	7.15376542822967	7.3701031589527	7.2410728553847	7.24456850696468	3.20427387270137	4.50191262565355	4.53477102241799	4.65916414785128	-3.2609036755431	8.6994100739379e-34	7.82816415503302e-30
Merged-chr15-102136289-4	chr15	102136180	102136380	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033277)	promoter-TSS (NM_001033277)	-65.0	NM_001033277	223918.0	Mm.385009	NM_001033277	ENSMUSG00000036966	Spryd3	BC008150	SPRY domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-134913617-3	chr4	134913520	134913720	+	916.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027935, intron 1 of 6)	B2_Mm2|SINE|B2	1296.0	NM_027935	71817.0	Mm.88349	NM_027935	ENSMUSG00000028822	Tmem50a	3200001F09Rik|CAM|Smp1	transmembrane protein 50A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99121053-4	chr15	99120949	99121149	+	863.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17D2|LTR|ERVK	-5796.0	NM_139140	72572.0	Mm.276650	NM_139140	ENSMUSG00000051934	Spats2	2700012F11Rik|59kDa|Scr59|p59	spermatogenesis associated, serine-rich 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-71016613-4	chr12	71016498	71016698	+	996.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045055)	promoter-TSS (NR_045055)	631.0	NM_001081195	238247.0	Mm.241601	NM_001081195	ENSMUSG00000048118	Arid4a	A630009N03|A630067N03Rik|Rbbp1	AT rich interactive domain 4A (RBP1-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-33628198-2	chr5	33628098	33628298	+	746.833374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359461)	promoter-TSS (NM_001359461)	-687.0	NM_001359461	74504.0	Mm.294695	NM_178390	ENSMUSG00000037339	Fam53a	2410018C17Rik|5430419M09Rik|Dntnp	family with sequence similarity 53, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97456830-1	chr6	97456730	97456930	+	920.5	f0_balb.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	2456.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	3.30751061584691	2.08228909042644	3.19478735370933	2.29431418371142	3.04263467671679	1.86307331917825	3.14217942137613	2.4459671589454	-0.209960667315817	0.790246596310339	0.998431161219273
Merged-chr17-7892914-2	chr17	7892814	7893014	+	720.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33086.0	NM_145968	72536.0	Mm.119680	NM_145968	ENSMUSG00000033450	Tagap	2610315E15Rik|TRD|Tcd-1|Tcd1|Tcd1a|tcs-1|tcs1	T cell activation Rho GTPase activating protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31472614-3	chr14	31472517	31472717	+	881.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001359847)	TTS (NM_001359847)	22141.0	NM_001359850	67011.0	Mm.291731	NM_025907	ENSMUSG00000021891	Mettl6	1600013P15Rik|AI467521|AU020711	methyltransferase like 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32610549-2	chr2	32610449	32610649	+	688.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025310, intron 2 of 5)	Tigger5|DNA|TcMar-Tigger	3564.0	NR_110347	50935.0	Mm.88831	NM_016973	ENSMUSG00000026811	St6galnac6	ST6GalNAcVI|Siat7f	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-126537008-4	chr4	126536895	126537095	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3537.0	NM_153177	76850.0	Mm.86705	NM_153177	ENSMUSG00000042500	Ago4	5730550L01Rik|AI481660|Eif2c4	argonaute RISC catalytic subunit 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-86417142-4	chr1	86417052	86417252	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-9177.0	NM_027966	71863.0	Mm.179627	NM_027966	ENSMUSG00000036574	Tex44	1700019O17Rik	testis expressed 44	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-108501761-2	chr9	108501661	108501861	+	954.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_027804)	TTS (NM_027804)	-6244.0	NM_133794	97541.0	Mm.272427	NM_133794	ENSMUSG00000032604	Qars	1110018N24Rik|1200016L19Rik|C80286|GLNRS	glutaminyl-tRNA synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-97000736-2	chr5	97000636	97000836	+	683.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_080708, intron 1 of 15)	Tigger17a|DNA|TcMar-Tigger	3047.0	NM_080708	140780.0	Mm.281490	NM_080708	ENSMUSG00000034663	Bmp2k	4933417M22Rik|AA673486|AV128808|BIKE	BMP2 inducible kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-50601816-3	chr6	50601701	50601901	+	864.922241	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5211.0	NM_027564	70821.0	Mm.157323	NM_027564	ENSMUSG00000029828	4921507P07Rik	TISP74	RIKEN cDNA 4921507P07 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-8924908-4	chr3	8924809	8925009	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1052.0	NM_025434	66230.0	Mm.38460	NM_025434	ENSMUSG00000040269	Mrps28	1500012D08Rik|AW061224	mitochondrial ribosomal protein S28	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-94295352-1	chr2	94295252	94295452	+	564.0	f1_balb.idr	Intergenic	Intergenic	-33953.0	NR_030431	735259.0		NR_030431	ENSMUSG00000076335	Mir670	Mirn670|mir-670|mmu-mir-670	microRNA 670	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-122856152-4	chr6	122856051	122856251	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009779)	promoter-TSS (NM_009779)	6.0	NM_009779	12267.0	Mm.2408	NM_009779	ENSMUSG00000040552	C3ar1	AZ3B|C3AR|HNFAG09	complement component 3a receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-78868304-4	chr12	78868192	78868392	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026114, intron 2 of 7)	RLTR35B_MM|LTR|ERVL	6220.0	NM_026114	13665.0	Mm.196220	NM_026114	ENSMUSG00000021116	Eif2s1	0910001O23Rik|2410026C18Rik|35kDa|Eif2a|eIF2alpha	eukaryotic translation initiation factor 2, subunit 1 alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-85053639-2	chr16	85053539	85053739	+	543.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001198825, intron 6 of 15)	B4A|SINE|B4	81428.0	NR_045889	100038614.0	Mm.441351	NR_045889	ENSMUSG00000115518	Gm10791	-	predicted gene 10791	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-38026468-1	chr19	38026368	38026568	+	606.0	f1_c57bl6.idr	intron (NM_001302140, intron 1 of 53)	intron (NM_001302140, intron 1 of 53)	17109.0	NM_001099634	226101.0	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding	-0.026631901898763	-0.0110858222472793	0.639573216756018	0.276725244692667	-0.0256632726240176	-0.00993518021618675	0.161341823056868	0.401357352374168	-0.834215217652248	0.696609141460244	1
Merged-chr7-27651158-4	chr7	27651077	27651277	+	904.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2747.0	NM_028417	73032.0	Mm.44095	NM_028417	ENSMUSG00000007944	Ttc9b	2900074C18Rik	tetratricopeptide repeat domain 9B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45595615-2	chr7	45595515	45595715	+	571.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	19875.0	NM_020013	56636.0	Mm.143736	NM_020013	ENSMUSG00000030827	Fgf21	-	fibroblast growth factor 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-83893793-3	chr7	83893689	83893889	+	656.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023403, intron 1 of 2)	intron (NM_023403, intron 1 of 2)	1789.0	NM_023403	67943.0	Mm.117365	NM_023403	ENSMUSG00000038503	Mesd	2210015O11Rik|AW537813|Mesdc2|mKIAA0081|mesd|msd	mesoderm development LRP chaperone	protein-coding	1.55920611015031	1.15320166879099	0.900638617890108	0.887413826525985	1.57345909364417	2.09341184937431	1.60183108947028	1.41892440557529	1.95986676767745	0.123885604807562	0.551658122846446
Merged-chr2-116897017-4	chr2	116896913	116897113	+	929.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3139.0	NR_040336	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-101889378-2	chr5	101889278	101889478	+	673.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 37 of 66)	intron (NM_172882, intron 37 of 66)	124248.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46648123-4	chr19	46648035	46648235	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177813, intron 2 of 3)	intron (NM_001177813, intron 2 of 3)	24734.0	NM_001177813	226178.0	Mm.329895	NM_146099	ENSMUSG00000047731	Wbp1l	D19Wsu162e|Opal1	WW domain binding protein 1 like	protein-coding	3.48413513101532	3.18050314676506	3.26373405428322	2.8830049818873	3.45443552345982	2.31214469981564	3.45281897135094	3.27297412664067	-0.0245499420717683	0.968396919525956	0.998431161219273
Merged-chr17-46246021-2	chr17	46245921	46246121	+	613.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009085, intron 3 of 8)	intron (NM_009085, intron 3 of 8)	2024.0	NM_009085	20016.0	Mm.3458	NM_009085	ENSMUSG00000067148	Polr1c	40kDa|AA409007|AA959927|AL024089|Polr1e|RPA40|Rpo1-1	polymerase (RNA) I polypeptide C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-31092069-2	chr3	31091969	31092169	+	727.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-2989.0	NM_001039090	20482.0	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-31085306-3	chr7	31085205	31085405	+	867.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8608.0	NM_008557	17178.0	Mm.263847	NM_008557	ENSMUSG00000057092	Fxyd3	Mat8	FXYD domain-containing ion transport regulator 3	protein-coding	0.989459058954828	0.538023527712789	0.856903064863145	1.05908281482679	0.999990713604462	0.539816006880471	0.531817587883963	1.06626102588391	-0.330451393920048	0.840228581717912	1
Merged-chr15-79330026-2	chr15	79329926	79330126	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-1655.0	NM_001199023	53357.0	Mm.155620	NM_016915	ENSMUSG00000042632	Pla2g6	BB112799|PNPLA9|iPLA(2)beta|iPLA2|iPLA2beta	phospholipase A2, group VI	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70466405-4	chr11	70466311	70466511	+	985.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001348337)	TTS (NM_001348337)	-6427.0	NM_023158	66102.0	Mm.425692	NM_023158	ENSMUSG00000018920	Cxcl16	0910001K24Rik|AV290116|BB024863|CXCL16v1|CXCL16v2|SR-PSOX|Zmynd15|b2b498Clo	chemokine (C-X-C motif) ligand 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-11004870-2	chr16	11004770	11004970	+	880.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1C|Other|Other	-4028.0	NR_040518	100043147.0	Mm.489001	NR_040518	ENSMUSG00000097056	Gm4262	-	predicted gene 4262	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-105048582-2	chr3	105048482	105048682	+	744.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030249, intron 1 of 5)	intron (NM_030249, intron 1 of 5)	4371.0	NM_001163332	80281.0	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-92370835-2	chr2	92370735	92370935	+	912.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_172670, exon 2 of 15)	exon (NM_172670, exon 2 of 15)	222.0	NM_001290774	228366.0	Mm.31158	NM_172670	ENSMUSG00000040434	Large2	5730485C17Rik|AI891893|Gyltl1b|Largel|mKIAA4105	LARGE xylosyl- and glucuronyltransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-50229375-4	chr11	50229267	50229467	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145926, intron 1 of 14)	intron (NM_145926, intron 1 of 14)	-2878.0	NR_105884	102466765.0		NR_105884	ENSMUSG00000098474	Mir6919	Gm27889|mmu-mir-6919	microRNA 6919	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-128705557-2	chr4	128705457	128705657	+	827.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_018774, intron 2 of 14)	B4A|SINE|B4	16819.0	NM_018774	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6999345-2	chr19	6999245	6999445	+	789.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_027351)	TTS (NR_027351)	3214.0	NR_027351	107328.0	Mm.391161	NM_153597	ENSMUSG00000047656	Trpt1	AU079016|AW045591|Tpt1|Tpt1h	tRNA phosphotransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72148751-2	chr6	72148651	72148851	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001035228, intron 5 of 6)	intron (NM_001035228, intron 5 of 6)	-25554.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120576668-2	chr11	120576568	120576768	+	789.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_133796)	TTS (NM_133796)	-3415.0	NM_011032	18453.0	Mm.16660	NM_011032	ENSMUSG00000025130	P4hb	ERp59|PDI|Pdia1|Thbp	prolyl 4-hydroxylase, beta polypeptide	protein-coding	1.30742685268473	1.61652190229516	0.768296052015224	1.26449567144518	0.741214601329738	1.74046303813077	0.771436552046967	1.39715295165134	-0.112601088480676	0.938012008183944	0.998431161219273
Merged-chr11-29809529-4	chr11	29809440	29809640	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146016, intron 16 of 41)	intron (NM_146016, intron 16 of 41)	16128.0	NM_176829	216622.0	Mm.443260	NM_176829	ENSMUSG00000078157	4931440F15Rik	Fem1ab	RIKEN cDNA 4931440F15 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-72105650-4	chr1	72105530	72105730	+	888.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-100435.0	NR_040454	71134.0	Mm.370574	NR_040454	ENSMUSG00000101848	4933417E11Rik	-	RIKEN cDNA 4933417E11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-108568611-3	chr9	108568511	108568711	+	910.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029947)	promoter-TSS (NR_029947)	-166.0	NR_029947	723864.0		NR_029947	ENSMUSG00000065579	Mir425	Mirn425|mmu-mir-425	microRNA 425	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-103316624-4	chr15	103316518	103316718	+	852.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356627, intron 4 of 7)	intron (NM_001356627, intron 4 of 7)	-6180.0	NM_030720	80910.0	Mm.160369	NM_030720	ENSMUSG00000063234	Gpr84	EX33	G protein-coupled receptor 84	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-26688414-2	chr8	26688314	26688514	+	559.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	136009.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123371779-2	chr5	123371679	123371879	+	795.916687	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_029850, exon 6 of 6)	3' UTR (NM_029850, exon 6 of 6)	-23019.0	NM_133917	208104.0	Mm.83277	NM_133917	ENSMUSG00000038342	Mlxip	AW228700|Mir|bHLHe36	MLX interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-11553939-4	chr2	11553826	11554026	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177758)	promoter-TSS (NM_001177758)	3.0	NM_001177758	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-76479888-4	chr11	76479788	76479988	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346670, intron 2 of 21)	MER117|DNA|hAT-Charlie	-11423.0	NM_001291186	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	4.83417980281156	5.86966892412316	5.4204508372691	5.52900424014789	5.11881952742577	4.843622093861	5.00985309127194	5.91382196566723	-0.183547414248704	0.586781909249736	0.967957151188163
Merged-chr15-66286857-3	chr15	66286679	66286879	+	616.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_152923)	promoter-TSS (NM_152923)	-555.0	NM_152923	110862.0	Mm.255585	NM_152923	ENSMUSG00000056258	Kcnq3	-	potassium voltage-gated channel, subfamily Q, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-120130365-3	chr5	120130272	120130472	+	759.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028762, intron 11 of 23)	ORR1D1|LTR|ERVL-MaLR	8891.0	NR_045793	100503427.0	Mm.446834	NR_045793	ENSMUSG00000097368	Gm10390	-	predicted gene 10390	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83681774-4	chr6	83681683	83681883	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(GAA)n|Simple_repeat|Simple_repeat	-3926.0	NM_144943	246278.0	Mm.136079	NM_144943	ENSMUSG00000034783	Cd207	-	CD207 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-121919150-4	chr9	121919048	121919248	+	979.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-2843.0	NM_010012	13124.0	Mm.20889	NM_010012	ENSMUSG00000050445	Cyp8b1	-	cytochrome P450, family 8, subfamily b, polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-126252738-3	chr4	126252623	126252823	+	774.599976	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145970, intron 1 of 16)	intron (NM_001145970, intron 1 of 16)	3596.0	NM_144941	245877.0	Mm.266716	NM_144941	ENSMUSG00000028849	Map7d1	AV028413|BC019977|Mtap7d1|Parcc1|Rprc1|mKIAA1187	MAP7 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-51520480-4	chr1	51520368	51520568	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151621, intron 3 of 3)	intron (NR_151621, intron 3 of 3)	-42069.0	NM_001310549	109019.0	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70702814-9	chr8	70702833	70703033	+	798.806396	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5194.0	NM_001286944	16478.0	Mm.419851	NM_010592	ENSMUSG00000071076	Jund	Jund1	jun D proto-oncogene	protein-coding	2.30444272720427	1.02592745495577	1.44889088167426	1.40746749903091	0.955596230451564	1.84742398934217	2.46967584981791	1.57815697407208	0.495650621276813	0.681429132088858	0.995882295196263
Merged-chr11-46265578-4	chr11	46265468	46265668	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252459, intron 13 of 30)	Lx8|LINE|L1	30011.0	NM_177075	320116.0	Mm.39600	NM_177075	ENSMUSG00000048721	Fndc9	C030019I05Rik	fibronectin type III domain containing 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106741468-4	chr11	106741358	106741558	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR51B_Mm|LTR|ERVK?	-9768.0	NM_001271375	380732.0	Mm.343952	NM_001033435	ENSMUSG00000040528	Milr1	Allergin-1|Gm885|Mca32	mast cell immunoglobulin like receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80440957-3	chr7	80440821	80441021	+	844.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-35485.0	NM_001081454	18550.0	Mm.5241	NM_011046	ENSMUSG00000030530	Furin	9130404I01Rik|Fur|PACE|Pcsk3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding	-0.28391668471481	0.217137760495202	-0.27493458193958	-0.278313801712964	0.361290786729705	-0.269560761570411	-0.0949719819399642	-0.277723688587594	0.810328756486515	0.74160085659952	1
Merged-chr12-39510163-4	chr12	39510063	39510263	+	851.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	527213.0	NM_007487	11861.0	Mm.12723	NM_007487	ENSMUSG00000047446	Arl4a	AI467555|Arl4	ADP-ribosylation factor-like 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-32485130-3	chr18	32485002	32485202	+	739.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	74932.0	NM_001048207	71683.0	Mm.292145	NM_027863	ENSMUSG00000090523	Gypc	0610037F22Rik|Cd236r	glycophorin C	protein-coding	1.77985543906299	2.44267768564749	1.53560818247796	1.49460217755426	3.26178707765613	1.82848811506241	2.48744626962068	2.40698808622166	1.68371592523704	0.0691474494210991	0.395034808129611
Merged-chr16-45283329-3	chr16	45283216	45283416	+	939.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER67D|LTR|ERV1	58979.0	NM_177584	208154.0	Mm.38199	NM_177584	ENSMUSG00000052013	Btla	A630002H24	B and T lymphocyte associated	protein-coding	2.97511490132115	2.63956108910314	2.55518409339771	2.60323534858094	2.85551006174808	2.89724397971614	2.57407626337584	2.90930522647014	0.212604633389194	0.756656283658469	0.998431161219273
Merged-chr10-21611221-4	chr10	21611125	21611325	+	911.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027968, intron 2 of 2)	intron (NR_027968, intron 2 of 2)	18080.0	NR_027968	67692.0	Mm.54306	NM_183266	ENSMUSG00000050844	1700020N01Rik	-	RIKEN cDNA 1700020N01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31250304-2	chr14	31250204	31250404	+	688.900024	f1_balb.idr|f1_c57bl6.idr	intron (NM_027949, intron 1 of 10)	B1_Mus1|SINE|Alu	1011.0	NM_001360625	71838.0	Mm.5348	NM_027949	ENSMUSG00000021902	Phf7	1700006H01Rik|1700010P14Rik|AI427892|AW555949	PHD finger protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76780976-4	chr15	76780871	76781071	+	891.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198420, intron 1 of 10)	intron (NM_198420, intron 1 of 10)	37199.0	NM_001168288	223666.0	Mm.322931	NM_198420	ENSMUSG00000033697	Arhgap39	9530053N22|AI843066|D15Wsu169e|Kiaa1688|Porf-2	Rho GTPase activating protein 39	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-52308800-4	chr12	52308686	52308886	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029760, intron 10 of 10)	intron (NM_029760, intron 10 of 10)	171823.0	NR_136881	102638611.0	Mm.363799	NR_136881	ENSMUSG00000111982	Gm35135	-	predicted gene, 35135	ncRNA	2.56082842325636	1.25454592611944	1.47682782663999	2.39071640759662	1.72705250053757	2.75074435387828	1.69624020397366	2.20454329651148	0.269249531689617	0.792270716299151	0.998431161219273
Merged-chr18-3009206-1	chr18	3009106	3009306	+	809.799988	f1_balb.idr	Intergenic	RLTR30|LTR|ERV1	114206.0	NM_001167539	100312476.0	Mm.480293	NM_001167539	ENSMUSG00000091539	Vmn1r238	-	vomeronasal 1 receptor, 238	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-31868948-4	chr11	31868874	31869074	+	874.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1966.0	NM_001290676	67579.0	Mm.339792	NM_026252	ENSMUSG00000020300	Cpeb4	Cpe-bp4|Cpeb-4|mCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding	3.59974627170854	3.66461564384108	4.15797154000611	2.20313229019125	3.13090896559702	3.41844031079032	3.64847356806981	3.7428170713313	-0.112052090009395	0.852448047055978	0.998431161219273
Merged-chr9-70252255-2	chr9	70252155	70252355	+	682.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_181072, intron 1 of 27)	intron (NM_181072, intron 1 of 27)	44905.0	NM_181072	71602.0	Mm.249311	NM_181072	ENSMUSG00000032220	Myo1e	2310020N23Rik|9130023P14Rik|AA407778|myosin-1e|myr 3	myosin IE	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-84826665-1	chr3	84826565	84826765	+	603.0	f1_c57bl6.idr	intron (NM_001177773, intron 1 of 13)	intron (NM_001177773, intron 1 of 13)	11088.0	NM_001177773	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	0.229859105232201	0.354880434093877	0.0548633645284033	0.283176590229757	-0.117087305293803	-0.103989598878968	-0.108276693071177	-0.111916006817967	-3.72466920363594	0.0843226003526394	1
Merged-chr15-101113383-4	chr15	101113297	101113497	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2358.0	NM_144790	208258.0	Mm.152952	NM_144790	ENSMUSG00000047034	Ankrd33	A930021G21Rik|Panky|Panky-a	ankyrin repeat domain 33	protein-coding	4.93927552035493	4.91739593729205	5.59230471051241	5.38110867409045	5.23429937344291	5.5919243791217	5.65423662734968	5.65358159058374	0.348331464497994	0.233389426763391	0.728756678286618
Merged-chr18-32377177-4	chr18	32377077	32377277	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001083334)	promoter-TSS (NM_001083334)	-40.0	NM_001083334	30948.0	Mm.4383	NM_009668	ENSMUSG00000024381	Bin1	ALP-1|Amphl|BRAMP-2|SH3P9	bridging integrator 1	protein-coding	4.99052064951014	4.2127931638667	5.32080402703289	4.99881677738482	5.21665427793076	5.20498682104588	5.44390467690829	5.05593213267048	0.346303590040328	0.290301662548215	0.795360911821054
Merged-chr7-83597058-4	chr7	83596953	83597153	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177695, intron 4 of 22)	intron (NM_177695, intron 4 of 22)	12122.0	NM_177695	233424.0	Mm.486619	NM_177695	ENSMUSG00000038540	Tmc3	9030203A06	transmembrane channel-like gene family 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-38836550-4	chr19	38836467	38836667	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001362424)	promoter-TSS (NM_001362424)	-12.0	NM_145952	209478.0	Mm.391153	NM_145952	ENSMUSG00000048720	Tbc1d12	BC033574	TBC1D12: TBC1 domain family, member 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166726269-2	chr2	166726169	166726369	+	732.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-12437.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-94730420-2	chr11	94730320	94730520	+	754.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25921.0	NM_001007584	432589.0	Mm.342314	NM_001007584	ENSMUSG00000056008	Gm11541	-	predicted gene 11541	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-137290833-3	chr5	137290727	137290927	+	839.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001290010, exon 2 of 5)	exon (NM_001290010, exon 2 of 5)	2573.0	NM_001290010	11423.0	Mm.255464	NM_009599	ENSMUSG00000023328	Ache	-	acetylcholinesterase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-64089407-4	chr15	64089277	64089477	+	918.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001276462, exon 28 of 28)	3' UTR (NM_001276462, exon 28 of 28)	-28929.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-14104324-3	chr14	14104242	14104442	+	813.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_139227, exon 12 of 12)	3' UTR (NM_139227, exon 12 of 12)	16562.0	NM_025550	66413.0	Mm.27591	NM_025550	ENSMUSG00000021737	Psmd6	2400006A19Rik	proteasome (prosome, macropain) 26S subunit, non-ATPase, 6	protein-coding	1.56245130793638	1.34297439943609	2.09190475385809	1.76268877964301	0.847801618328378	0.904482510302887	0.88656347044674	1.77313498294126	-1.86641696194593	0.164326629501702	0.627932209944809
Merged-chr9-99560542-2	chr9	99560442	99560642	+	952.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_028768, intron 1 of 21)	B1F2|SINE|Alu	8357.0	NM_001166138	74125.0	Mm.234823	NM_028768	ENSMUSG00000032468	Armc8	1200015K23Rik|Gid5|HSPC056	armadillo repeat containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-46964103-2	chr18	46964003	46964203	+	556.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178377, intron 3 of 6)	intron (NM_178377, intron 3 of 6)	5227.0	NM_178377	69456.0	Mm.210734	NM_178377	ENSMUSG00000042705	Commd10	2310003A05Rik|AU019438|DRWMS2|Tg(Vav1-icre)A2Kio|Vav-cre|Vav-iCre|Vav1-Cre|VavCre	COMM domain containing 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21714523-1	chr9	21714423	21714623	+	561.0	f1_balb.idr	Intergenic	Intergenic	-9053.0	NM_001252658	16835.0	Mm.3213	NM_010700	ENSMUSG00000032193	Ldlr	Hlb301	low density lipoprotein receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28737475-2	chr17	28737375	28737575	+	750.474976	f1_balb.idr|f1_c57bl6.idr	intron (NM_001168513, intron 9 of 11)	intron (NM_001168513, intron 9 of 11)	-31842.0	NM_011950	26415.0	Mm.27970	NM_011950	ENSMUSG00000004864	Mapk13	SAPK4|Serk4	mitogen-activated protein kinase 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-7956302-4	chr10	7956208	7956408	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138667)	promoter-TSS (NM_138667)	-185.0	NM_138667	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-89141016-2	chr15	89140916	89141116	+	556.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013871)	promoter-TSS (NM_013871)	-313.0	NM_013871	29857.0	Mm.38343	NM_013871	ENSMUSG00000022610	Mapk12	AW123708|Erk6|P38gamma|Prkm12|Sapk3	mitogen-activated protein kinase 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-99336606-4	chr5	99336482	99336682	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-83655.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69906152-2	chr11	69906052	69906252	+	937.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013414, intron 8 of 28)	intron (NM_001013414, intron 8 of 28)	4336.0	NM_001013414	216860.0	Mm.268347	NM_001013414	ENSMUSG00000047284	Neurl4	-	neuralized E3 ubiquitin protein ligase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-12521441-2	chr4	12521341	12521541	+	571.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-349426.0	NM_026558	68099.0	Mm.25340	NM_026558	ENSMUSG00000028218	Fam92a	6720467C03Rik|Fam92a1	family with sequence similarity 92, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-31216112-4	chr3	31215970	31216170	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172861, intron 7 of 7)	L1MA4|LINE|L1	66150.0	NM_008770	18417.0	Mm.4425	NM_008770	ENSMUSG00000037625	Cldn11	Claudin-11|Claudin11|Osp|Otm	claudin 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-119444901-4	chr9	119444744	119444944	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172456)	promoter-TSS (NM_172456)	-116.0	NR_153320	208194.0	Mm.101578	NM_172456	ENSMUSG00000042787	Exog	AW557704|ENGL-B|ENGL-a|Endogl1|Endogl2|Engl|Engla|Englb	endo/exonuclease (5'-3'), endonuclease G-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-93354549-2	chr13	93354449	93354649	+	641.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_147176, intron 4 of 9)	B3A|SINE|B2	46515.0	NM_152134	26556.0	Mm.37533	NM_011982	ENSMUSG00000007617	Homer1	PSD-Zip45|SYN47|Ves-1|homer-1|vesl-1	homer scaffolding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-157129987-4	chr2	157129861	157130061	+	882.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001139520, intron 1 of 16)	intron (NM_001139520, intron 1 of 16)	5261.0	NM_001139520	56045.0	Mm.248478	NM_018851	ENSMUSG00000027639	Samhd1	E330031J07Rik|Mg11	SAM domain and HD domain, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-84063571-2	chr3	84063471	84063671	+	670.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23410.0	NM_172681	229473.0	Mm.28838	NM_172681	ENSMUSG00000033767	Tmem131l	D930015E06Rik|Kiaa0922|mKIAA0922	transmembrane 131 like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-13557571-2	chr13	13557471	13557671	+	999.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-32838.0	NM_010748	17101.0	Mm.342337	NM_010748	ENSMUSG00000019726	Lyst	D13Sfk13|beige|bg	lysosomal trafficking regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-86556865-4	chr6	86556749	86556949	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_037961, intron 3 of 4)	B1F1|SINE|Alu	29448.0	NR_037961	72012.0	Mm.349174	NR_037960	ENSMUSG00000097048	1600020E01Rik	-	RIKEN cDNA 1600020E01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-64884670-3	chr16	64884558	64884758	+	846.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28|LTR|ERVL	32657.0	NM_178647	106143.0	Mm.10160	NM_178647	ENSMUSG00000054604	Cggbp1	AA960172|AL023996|AW045841	CGG triplet repeat binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-36475827-4	chr3	36475734	36475934	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_105976)	promoter-TSS (NR_105976)	53.0	NM_009673	11747.0	Mm.1620	NM_009673	ENSMUSG00000027712	Anxa5	Anx5|R74653	annexin A5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-18991138-4	chr7	18991037	18991237	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145579)	promoter-TSS (NM_145579)	-108.0	NM_145579	232934.0	Mm.440069	NM_145579	ENSMUSG00000048481	Mypop	Myodysa|P42pop	Myb-related transcription factor, partner of profilin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-33907614-4	chr1	33907508	33907708	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001276764)	promoter-TSS (NM_001276764)	13.0	NM_177235	320705.0	Mm.336619	NM_177235	ENSMUSG00000042182	Bend6	B230209C24Rik	BEN domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-129584932-3	chr5	129584829	129585029	+	743.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011846, intron 1 of 9)	CpG	760.0	NM_011846	23948.0	Mm.42047	NM_011846	ENSMUSG00000029436	Mmp17	MT4-MMP|MT4MMP|MTMMP4	matrix metallopeptidase 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28809618-4	chr7	28809539	28809739	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4|SINE|ID	-1251.0	NM_177301	15388.0	Mm.9043	NM_177301	ENSMUSG00000015165	Hnrnpl	C79783|D830027H13Rik|Hnrpl	heterogeneous nuclear ribonucleoprotein L	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72355284-6	chr6	72355227	72355427	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144916)	promoter-TSS (NM_144916)	-156.0	NM_144916	232086.0	Mm.491165	NM_144916	ENSMUSG00000055912	Tmem150a	BC014685|Tmem150	transmembrane protein 150A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91726435-4	chr16	91726402	91726602	+	988.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026994, intron 1 of 11)	intron (NM_026994, intron 1 of 11)	2300.0	NM_026994	66609.0	Mm.109823	NM_026994	ENSMUSG00000058240	Cryzl1	2210407J23Rik|2410006O11Rik|QOH-1	crystallin, zeta (quinone reductase)-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-46371245-2	chr4	46371145	46371345	+	862.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18178.0	NM_029086	74753.0	Mm.45973	NM_029086	ENSMUSG00000028331	Trmo	5830415F09Rik|AV014846|Nap1	tRNA methyltransferase O	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70769105-4	chr8	70769007	70769207	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008841, exon 15 of 16)	exon (NM_008841, exon 15 of 16)	-2444.0	NM_023065	65972.0	Mm.30241	NM_023065		Ifi30	GILT|IP30	interferon gamma inducible protein 30	protein-coding	4.99452655732799	5.14331480184354	4.87307437503161	4.97337169935853	5.00168812987057	4.88062780607561	4.29137993353813	5.02986224119895	-0.194587423269417	0.556435099116922	0.960321604678676
Merged-chr13-105055640-4	chr13	105055542	105055742	+	986.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029879)	promoter-TSS (NM_029879)	-712.0	NM_029879	52882.0	Mm.100348	NM_029879	ENSMUSG00000021719	Rgs7bp	A930030I01Rik|AI842293|D13Bwg1146e|R7bp	regulator of G-protein signalling 7 binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-104818438-2	chr13	104818338	104818538	+	854.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026075, intron 1 of 4)	intron (NM_026075, intron 1 of 4)	1268.0	NR_135272	67288.0	Mm.125465	NM_026075	ENSMUSG00000021716	Srek1ip1	3110031B13Rik|AI462702|AV348305|AW121048|Sfrs12ip1|Srsf12ip1	splicing regulatory glutamine/lysine-rich protein 1interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-128713052-4	chr1	128712952	128713152	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-120753.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	2.23390001518234	2.78232084534016	3.44706080970776	2.82520359334163	2.606737351563	2.92043157169848	3.11200469623979	2.36645305555687	-0.217568165190048	0.760674385794324	0.998431161219273
Merged-chr15-82899776-4	chr15	82899680	82899880	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045068, intron 1 of 3)	CpG	700.0	NR_045068	100504637.0	Mm.440928	NR_045068	ENSMUSG00000100199	Gm20324	-	predicted gene, 20324	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3658149-3	chr12	3658087	3658287	+	946.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162465, intron 8 of 17)	L2|LINE|L2	85203.0	NM_007886	13528.0	Mm.286202	NM_007886	ENSMUSG00000071454	Dtnb	-	dystrobrevin, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-137087593-2	chr5	137087493	137087693	+	596.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15321.0	NM_008871	18787.0	Mm.250422	NM_008871	ENSMUSG00000037411	Serpine1	PAI-1|PAI1|Planh1	serine (or cysteine) peptidase inhibitor, clade E, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-66175835-4	chr14	66175630	66175830	+	784.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172498, exon 11 of 30)	exon (NM_172498, exon 11 of 30)	34770.0	NM_144803	110902.0	Mm.57350	NM_144803	ENSMUSG00000022041	Chrna2	Acra-2|Acra2|BC011490	cholinergic receptor, nicotinic, alpha polypeptide 2 (neuronal)	protein-coding	0.26635603724587	0.286987169213733	0.953957276471092	0.275024276376767	0.754579496333002	0.651825258051462	0.748811790467577	0.275935487335177	0.78284002869615	0.683905558261855	1
Merged-chr1-149955676-4	chr1	149955573	149955773	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008869, intron 1 of 17)	intron (NM_008869, intron 1 of 17)	5617.0	NM_008869	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-13242721-3	chr12	13242616	13242816	+	792.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134040, intron 5 of 25)	intron (NM_134040, intron 5 of 25)	6458.0	NM_134040	104721.0	Mm.251255	NM_134040	ENSMUSG00000037149	Ddx1	AA409185|DBP-RB	DEAD (Asp-Glu-Ala-Asp) box polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-84809217-2	chr2	84809117	84809317	+	883.166626	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_019949, exon 4 of 4)	3' UTR (NM_019949, exon 4 of 4)	10389.0	NM_019949	56791.0	Mm.38261	NM_019949	ENSMUSG00000027078	Ube2l6	2810489I21Rik|RIG-B|UBCH8|Ubce8|Ubcm8	ubiquitin-conjugating enzyme E2L 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-103347615-4	chr12	103347519	103347719	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023049, intron 1 of 9)	intron (NM_023049, intron 1 of 9)	8382.0	NM_023049	65256.0	Mm.27159	NM_023049	ENSMUSG00000021200	Asb2	1110008E15Rik	ankyrin repeat and SOCS box-containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-21961134-4	chr10	21961019	21961219	+	941.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161845, intron 2 of 13)	intron (NM_001161845, intron 2 of 13)	-17553.0	NM_001161847	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	4.66803976400426	3.96040416532617	5.02865704065175	5.00998008328174	5.28031510561968	5.21927200970244	6.17562133823052	5.77235641276518	1.08633287876688	0.00172239888049166	0.0299787356404336
Merged-chr5-17820655-1	chr5	17820555	17820755	+	906.0	f0_balb.idr	intron (NM_001159557, intron 4 of 15)	intron (NM_001159557, intron 4 of 15)	15241.0	NM_001159555	12491.0	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 molecule	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123907793-2	chr5	123907658	123907858	+	891.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_026603, intron 1 of 7)	intron (NM_026603, intron 1 of 7)	483.0	NM_026603	68184.0	Mm.28549	NM_026603	ENSMUSG00000023106	Denr	1500003K04Rik	density-regulated protein	protein-coding	-0.879434232553282	-0.863368186228245	-0.870001710421719	0.207470257140781	-0.878548218226478	-0.860017512281834	-0.869002348459762	-0.872902222154427	-3.52577640122347	0.237954581177968	1
Merged-chr1-117597733-1	chr1	117597633	117597833	+	652.0	f1_balb.idr	Intergenic	Intergenic	712995.0	NR_153836	22099.0	Mm.426637	NM_011650	ENSMUSG00000026374	Tsn	2610034C24Rik|AU040286|C3PO|TB-RBP	translin	protein-coding	-1.18818405238703	-1.1621273909064	-1.17340543805306	-1.18266956177369	-0.508992984534732	-1.15968339104222	-1.17085233538681	-1.18101128805699	2.76775479490304	0.421927342186551	1
Merged-chr14-16363947-2	chr14	16363847	16364047	+	623.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1259.0	NM_009409	21974.0	Mm.130362	NM_009409	ENSMUSG00000017485	Top2b	D230016L12Rik|Top-2	topoisomerase (DNA) II beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125042180-4	chr6	125042089	125042289	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133345, intron 1 of 7)	intron (NM_133345, intron 1 of 7)	2341.0	NM_133345	28019.0	Mm.262547	NM_133345	ENSMUSG00000030330	Ing4	D6Wsu147e|D6Xrf92|p29ING4	inhibitor of growth family, member 4	protein-coding	1.94661268146667	1.34968726818228	2.82774924546936	2.88522675005668	2.55373707911575	2.20470165049913	1.79598659075916	1.91473689002738	-0.571981542324823	0.54508550038041	0.956317386463857
Merged-chr18-61383786-2	chr18	61383686	61383886	+	871.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_133249, intron 1 of 11)	intron (NM_133249, intron 1 of 11)	14114.0	NR_029879	723889.0		NR_029879	ENSMUSG00000105200	Mir378a	Mir378|Mirn378|mmu-mir-378|mmu-mir-378a	microRNA 378a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-43737176-3	chr5	43737083	43737283	+	912.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359906, intron 35 of 37)	intron (NM_001359906, intron 35 of 37)	44966.0	NM_001159963	242960.0	Mm.25794	NM_178729	ENSMUSG00000039753	Fbxl5	Fbl4|Fir4	F-box and leucine-rich repeat protein 5	protein-coding	3.12440120049225	2.87082429084138	3.19493138522862	3.42127586770474	5.52922351854925	4.88479137600137	4.77917633077971	4.75955899862691	2.47238953458649	3.23335786903794e-08	3.28761251802689e-06
Merged-chr5-110106974-2	chr5	110106874	110107074	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145147, intron 2 of 9)	intron (NM_145147, intron 2 of 9)	1223.0	NM_145147	107999.0	Mm.86267	NM_145147	ENSMUSG00000033434	Gtpbp6	AV119224|Pgbpll|pgpl	GTP binding protein 6 (putative)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-24913655-2	chr16	24913555	24913755	+	586.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 10 of 12)	intron (NM_178665, intron 10 of 12)	-145984.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4031120-2	chr19	4031020	4031220	+	702.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	A-rich|Low_complexity|Low_complexity	6792.0	NM_013541	14870.0	Mm.299292	NM_013541	ENSMUSG00000060803	Gstp1	GstpiB	glutathione S-transferase, pi 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70775884-5	chr8	70775863	70776063	+	790.93335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029440)	promoter-TSS (NR_029440)	749.0	NM_008841	18709.0	Mm.12945	NM_008841	ENSMUSG00000031834	Pik3r2	p85beta	phosphoinositide-3-kinase regulatory subunit 2	protein-coding	1.95569581475079	1.1893696808265	2.22582168401976	2.33153768651329	1.87106201534111	1.1945472520862	1.76370163980038	2.0746430285749	-0.640492182918594	0.557641420619165	0.960321604678676
Merged-chr6-115970383-2	chr6	115970283	115970483	+	809.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026376, intron 9 of 35)	intron (NM_026376, intron 9 of 35)	24622.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-73467983-3	chr13	73467869	73468069	+	954.7333369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145376, intron 1 of 13)	intron (NM_145376, intron 1 of 13)	586.0	NM_145376	210992.0	Mm.284649	NM_145376	ENSMUSG00000021608	Lpcat1	2900035H07Rik|Aytl2|BB137372|BC005662|C87117|LPCAT|rd11	lysophosphatidylcholine acyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-32138817-4	chr9	32138712	32138912	+	822.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195632, intron 2 of 21)	L2a|LINE|L2	22676.0	NM_001195632	330914.0	Mm.46683	NM_177379	ENSMUSG00000041444	Arhgap32	3426406O18Rik|Gc-gap|Grit|Px-rics|Rics|mKIAA0712|p200Rhogap|p250Gap	Rho GTPase activating protein 32	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-97581899-4	chr15	97581792	97581992	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	123930.0	NM_028003	71919.0	Mm.12255	NM_028003	ENSMUSG00000022466	Rpap3	2310042P20Rik|D15Ertd682e	RNA polymerase II associated protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-120496432-2	chr6	120496332	120496532	+	713.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2625.0	NM_033567	94047.0	Mm.23088	NM_033567	ENSMUSG00000094626	Tmem121b	AW048664|Cecr6	transmembrane protein 121B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-135680907-4	chr1	135680801	135681001	+	896.8250119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39162.0	NM_001360782	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-78190101-2	chr11	78190001	78190201	+	660.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159482, intron 3 of 10)	intron (NM_001159482, intron 3 of 10)	1353.0	NM_033475	19376.0	Mm.275864	NM_033475	ENSMUSG00000002059	Rab34	AI326479|Narr|Rah|Rah1	RAB34, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-75819315-3	chr12	75819206	75819406	+	912.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005510, intron 1 of 115)	intron (NM_001005510, intron 1 of 115)	988.0	NM_001005510	319565.0	Mm.26652	NM_001005510	ENSMUSG00000063450	Syne2	6820443O06Rik|AW546258|Cpfl8|D12Ertd777e|KASH2|NUA|Nesp2g|dice|mKIAA1011	spectrin repeat containing, nuclear envelope 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90437220-2	chr2	90437107	90437307	+	657.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 23 of 23)	MTEa|LTR|ERVL-MaLR	36567.0	NM_146263	258330.0	Mm.330392	NM_146263	ENSMUSG00000082980	Olfr1274-ps	GA_x5J8B7W2BV0-3116-4045|MOR228-4|MOR228-5|Olfr1274	olfactory receptor 1274, pseudogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-83879535-4	chr7	83879428	83879628	+	975.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_030705)	TTS (NM_030705)	4813.0	NM_030705	80889.0	Mm.272998	NM_030705	ENSMUSG00000070462	Tlnrd1	AW061151|Mesdc1	talin rod domain containing 1	protein-coding	2.80783117987187	3.05237630991301	3.05669888336547	2.96742266108633	3.01953866243418	3.85049313340775	4.14760008525531	2.10734490484032	0.849550472977573	0.205986653173679	0.693707835750198
Merged-chr2-166711832-4	chr2	166711741	166711941	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	1991.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-73541700-4	chr7	73541594	73541794	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081345)	promoter-TSS (NM_001081345)	52.0	NM_001081345	244059.0	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-122368124-2	chr9	122368024	122368224	+	602.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_026179, exon 3 of 7)	exon (NM_026179, exon 3 of 7)	16508.0	NM_026179	67469.0	Mm.280254	NM_026179	ENSMUSG00000032540	Abhd5	1300003D03Rik|2010002J10Rik|CDS|CGI-58|IECN5|NCIE2	abhydrolase domain containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99976537-4	chr7	99976444	99976644	+	972.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175388, intron 1 of 5)	intron (NM_175388, intron 1 of 5)	3914.0	NM_175388	108937.0	Mm.323087	NM_175388	ENSMUSG00000058761	Rnf169	2900057K09Rik	ring finger protein 169	protein-coding	0.460166120576309	0.488961815139404	0.479623100844245	1.05179755449565	0.989067877996582	1.38061283325532	0.679236843033205	0.810495644001399	1.81424931126153	0.275609072468896	1
Merged-chr5-140507143-2	chr5	140507043	140507243	+	933.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021528, intron 1 of 1)	intron (NM_021528, intron 1 of 1)	1534.0	NM_021528	59031.0	Mm.28934	NM_021528	ENSMUSG00000036599	Chst12	AI595374|C4S-2|C4ST2	carbohydrate sulfotransferase 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-94311660-2	chr3	94311560	94311760	+	690.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029431, intron 1 of 5)	intron (NM_029431, intron 1 of 5)	1528.0	NM_029431	75778.0	Mm.45092	NM_029431	ENSMUSG00000028145	Them4	2700077M13Rik|4921507I02Rik	thioesterase superfamily member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-65961741-3	chr17	65961636	65961836	+	807.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10549.0	NM_023053	65960.0	Mm.10153	NM_023053	ENSMUSG00000024098	Twsg1	1810013J15Rik|9030422N06Rik|AW552143|D17Ertd403e|Tsg|Twg	twisted gastrulation BMP signaling modulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-76541002-2	chr12	76540902	76541102	+	629.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_153804, intron 1 of 18)	intron (NM_153804, intron 1 of 18)	6923.0	NR_046044	100504549.0	Mm.440349	NR_046044	ENSMUSG00000112388	AI463170	-	expressed sequence AI463170	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-182494692-3	chr1	182494599	182494799	+	682.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009794, intron 2 of 20)	intron (NM_009794, intron 2 of 20)	22911.0	NM_009794	12334.0	Mm.19306	NM_009794	ENSMUSG00000026509	Capn2	AI326419|CALP80|Capa-2|Capa2|m-calpain|m-calpin	calpain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-43921580-3	chr19	43921482	43921682	+	901.922241	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028029, intron 1 of 15)	intron (NM_028029, intron 1 of 15)	18616.0	NM_028029	71972.0	Mm.159024	NM_028029	ENSMUSG00000025195	Dnmbp	2410003L07Rik|2410003M15Rik|TUBA	dynamin binding protein	protein-coding	2.0479995236513	1.27257763044741	1.98366722208582	2.57952395507782	2.24461755323419	2.06728587905429	1.49187007933722	2.06057694347574	-0.169470194570215	0.866309574456091	0.998431161219273
Merged-chr17-8311037-4	chr17	8310916	8311116	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134114)	promoter-TSS (NM_134114)	-72.0	NM_001357890	106489.0	Mm.311080	NM_134114	ENSMUSG00000073468	Sft2d1	5630401J11Rik|AA409698	SFT2 domain containing 1	protein-coding	5.48931201655068	5.53130715826305	5.93047282505136	5.2683696997835	5.78376882109108	5.46774823366046	6.12528613664352	5.61820557261565	0.223932379747756	0.410004168653889	0.89375545339923
Merged-chr2-181629904-1	chr2	181629804	181630004	+	630.0	f1_c57bl6.idr	intron (NM_133701, intron 6 of 20)	B1_Mm|SINE|Alu	28585.0	NM_133701	68879.0	Mm.292001	NM_133701	ENSMUSG00000002455	Prpf6	1190003A07Rik|2610031L17Rik|ANT-1|U5-102K	pre-mRNA splicing factor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85398234-2	chr12	85398134	85398334	+	639.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23517.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-34525891-2	chr19	34525791	34525991	+	560.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021460, intron 1 of 9)	intron (NM_021460, intron 1 of 9)	1583.0	NM_001111100	16889.0	Mm.157545	NM_021460	ENSMUSG00000024781	Lipa	AA960673|Lal|Lip-1|Lip1	lysosomal acid lipase A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-146331120-4	chr3	146331006	146331206	+	931.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47838.0	NR_033542	100038607.0	Mm.365888	NR_033542	ENSMUSG00000105602	Gm10636	-	predicted gene 10636	ncRNA	0.869463701845062	0.578763697776654	0.566155503839183	1.49774707297452	1.69471793409882	0.581572981710479	0.568957270520872	1.2033646816037	0.64579490356979	0.696303978423755	0.997923870727665
Merged-chr1-156474275-4	chr1	156474167	156474367	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009230)	promoter-TSS (NM_009230)	61.0	NM_009230	20652.0	Mm.28099	NM_009230	ENSMUSG00000026600	Soat1	8430426K15Rik|ACAT-1|AW550831|Acact|ald|hid	sterol O-acyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-18063876-4	chr2	18063819	18064019	+	991.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045539)	promoter-TSS (NR_045539)	-666.0	NM_001252560	17354.0	Mm.209175	NM_010804	ENSMUSG00000026743	Mllt10	Af10|B130021D15Rik|D630001B22Rik|mKIAA4140	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-134765681-2	chr4	134765581	134765781	+	926.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145554, intron 1 of 8)	intron (NM_145554, intron 1 of 8)	2323.0	NM_145554	100017.0	Mm.27486	NM_145554	ENSMUSG00000037295	Ldlrap1	AA691260|ARH2|Arh|Arh1|FHCB1|FHCB2	low density lipoprotein receptor adaptor protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-62998806-4	chr9	62998708	62998908	+	857.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	-17929.0	NM_019663	56469.0	Mm.431253	NM_019663	ENSMUSG00000032405	Pias1	2900068C24Rik|Ddxbp1|GBP	protein inhibitor of activated STAT 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-58615376-4	chr18	58615219	58615419	+	796.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44163.0	NM_025478	66307.0	Mm.182574	NM_025478	ENSMUSG00000024601	Isoc1	2610034N03Rik	isochorismatase domain containing 1	protein-coding	-1.56355737717652	-1.81244775989375	-1.82128546162293	-1.82854501295842	-1.83962066705452	-1.81053259306168	-1.81928479966835	-1.82724555674025	-1.28500227969968	0.715751224811686	1
Merged-chr2-116922794-4	chr2	116922688	116922888	+	954.81665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22636.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127968351-4	chr7	127968251	127968451	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139149, intron 1 of 14)	intron (NM_139149, intron 1 of 14)	872.0	NM_139149	233908.0	Mm.277680	NM_139149	ENSMUSG00000030795	Fus	D430004D17Rik|D930039C12Rik|Fus1|Tls	fused in sarcoma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-90906667-4	chr5	90906540	90906740	+	964.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009140)	TTS (NM_009140)	2741.0	NM_009140	20310.0	Mm.4979	NM_009140	ENSMUSG00000058427	Cxcl2	CINC-2a|GROb|Gro2|MIP-2|MIP-2a|Mgsa-b|Mip2|Scyb|Scyb2	chemokine (C-X-C motif) ligand 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119392213-4	chr11	119392127	119392327	+	994.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	1755.0	NR_035453	100316690.0		NR_035453	ENSMUSG00000088015	Mir1932	mir-1932|mmu-mir-1932	microRNA 1932	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-69480597-2	chr9	69480497	69480697	+	846.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007585, intron 5 of 12)	intron (NM_007585, intron 5 of 12)	23653.0	NR_037296	100526560.0		NR_037296	ENSMUSG00000093042	Mir3109	mir-3109|mmu-mir-3109	microRNA 3109	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-123551986-4	chr4	123551897	123552097	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199137, intron 2 of 92)	intron (NM_001199137, intron 2 of 92)	-64423.0	NR_105824	102465214.0		NR_105824	ENSMUSG00000099005	Mir6398	Gm27657|mmu-mir-6398	microRNA 6398	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141579211-3	chr7	141579062	141579262	+	969.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357068, intron 1 of 21)	intron (NM_001357068, intron 1 of 21)	16982.0	NM_007459	11772.0	Mm.253090	NM_007459	ENSMUSG00000002957	Ap2a2	2410074K14Rik|AF006990|AW146353|Adtab|C78001|L25	adaptor-related protein complex 2, alpha 2 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-25856085-2	chr14	25855985	25856185	+	584.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013469, intron 1 of 14)	intron (NM_013469, intron 1 of 14)	13930.0	NM_013469	11744.0	Mm.294083	NM_013469	ENSMUSG00000021866	Anxa11	A830099O17Rik|Anx11	annexin A11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-26909170-2	chr2	26909070	26909270	+	634.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033908, intron 1 of 3)	intron (NM_001033908, intron 1 of 3)	1472.0	NM_011513	20933.0	Mm.397932	NM_011513	ENSMUSG00000015776	Med22	AW212655|AW558812|Surf-5|Surf5	mediator complex subunit 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83046971-1	chr6	83046871	83047071	+	565.0	f1_balb.idr	intron (NM_013586, intron 4 of 13)	intron (NM_013586, intron 4 of 13)	-2740.0	NR_106007	102465630.0		NR_106007	ENSMUSG00000099035	Mir7040	Gm27489|mmu-mir-7040	microRNA 7040	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-90296364-2	chr3	90296264	90296464	+	709.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26215.0	NR_105979	102465612.0		NR_105979	ENSMUSG00000099199	Mir7012	Gm27370|mmu-mir-7012	microRNA 7012	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-75315866-2	chr10	75315766	75315966	+	597.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1011.0	NM_009630	11540.0	Mm.333734	NM_009630	ENSMUSG00000020178	Adora2a	A2AAR|A2aR|AA2AR	adenosine A2a receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-4924311-6	chr7	4924247	4924447	+	841.138916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_201355, exon 3 of 3)	exon (NM_201355, exon 3 of 3)	1467.0	NM_001358883	269854.0	Mm.42652	NM_201355	ENSMUSG00000035285	Nat14	BC047219	N-acetyltransferase 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-136582070-4	chr1	136581958	136582158	+	995.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42843.0	NM_177643	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-67389864-3	chr18	67389824	67390024	+	846.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026473)	promoter-TSS (NM_026473)	-807.0	NM_026473	67951.0	Mm.181860	NM_026473	ENSMUSG00000001473	Tubb6	2310057H16Rik|BB220206	tubulin, beta 6 class V	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-181230934-1	chr1	181230834	181231034	+	637.333313	f0_balb.idr	Intergenic	Intergenic	-18956.0	NM_145514	226757.0	Mm.289082	NM_145514	ENSMUSG00000038733	Wdr26	1600024A01Rik|AA693241|AI447817|AU044014|C77982|Gid7	WD repeat domain 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-36552588-2	chr5	36552488	36552688	+	563.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133910, intron 2 of 13)	intron (NM_133910, intron 2 of 13)	-21965.0	NM_001113364	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-67639905-1	chr18	67639805	67640005	+	581.0	f1_c57bl6.idr	intron (NM_001357523, intron 2 of 11)	intron (NM_001357523, intron 2 of 11)	1450.0	NM_001357523	225659.0	Mm.111928	NM_001081073	ENSMUSG00000073542	Cep76	6230425F05Rik|9630013E05	centrosomal protein 76	protein-coding	0.0158878920718549	1.15939994397025	0.0373328174059592	1.19132621417333	0.0179235376608072	0.0496643495373376	0.039577089256375	0.0307900745873676	-4.50006050713588	0.0335698120014957	1
Merged-chr14-26579031-3	chr14	26578920	26579120	+	698.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001134465)	promoter-TSS (NM_001134465)	-530.0	NM_001134465	211922.0	Mm.260512	NM_145969	ENSMUSG00000040818	Dennd6a	Fam116a	DENN/MADD domain containing 6A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55293326-4	chr19	55293241	55293441	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027976, intron 17 of 21)	intron (NM_027976, intron 17 of 21)	22695.0	NM_001360595	66980.0	Mm.386789	NM_025883	ENSMUSG00000024982	Zdhhc6	2400007G07Rik|5930409M18Rik|AI462345|C77369|DHHC-6	zinc finger, DHHC domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100705190-2	chr11	100705090	100705290	+	933.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030150)	promoter-TSS (NM_030150)	-919.0	NM_030150	80861.0	Mm.271830	NM_030150	ENSMUSG00000017830	Dhx58	B430001I08Rik|D11Lgp2e|LPG2|Lgp2|RLR-3	DEXH (Asp-Glu-X-His) box polypeptide 58	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-143739599-4	chr1	143739493	143739693	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023505)	promoter-TSS (NM_023505)	-22.0	NM_023505	69367.0	Mm.272727	NM_023505	ENSMUSG00000018196	Glrx2	1700010P22Rik|AI645710|Grx2	glutaredoxin 2 (thioltransferase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-78436863-2	chr10	78436763	78436963	+	744.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172134, exon 11 of 11)	3' UTR (NM_172134, exon 11 of 11)	2064.0	NR_105837	102465221.0		NR_105837	ENSMUSG00000098932	Mir6410	Gm27916|mmu-mir-6410	microRNA 6410	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65575525-4	chr9	65575442	65575642	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153119, intron 1 of 5)	MIR|SINE|MIR	4545.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-65260074-2	chr8	65259974	65260174	+	667.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-130511.0	NM_001352886	407795.0	Mm.387876	NM_001352886	ENSMUSG00000074300	BC030870	SMIM31	cDNA sequence BC030870	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-100444883-2	chr12	100444783	100444983	+	770.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033213, intron 5 of 19)	intron (NM_001033213, intron 5 of 19)	75939.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-31070439-2	chr6	31070339	31070539	+	730.849976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7346.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-34238067-3	chr4	34238008	34238208	+	810.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-188041.0	NM_026293	67652.0	Mm.55848	NM_026293	ENSMUSG00000028264	Spaca1	1700124L11Rik|4930540L03Rik	sperm acrosome associated 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-75743826-3	chr3	75743723	75743923	+	973.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-88092.0	NR_040539	69193.0	Mm.374088	NR_040539	ENSMUSG00000099370	Platr10	2410007B07Rik	pluripotency associated transcript 10	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-128127627-2	chr7	128127527	128127727	+	661.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1941.0	NM_021334	16411.0	Mm.22378	NM_021334	ENSMUSG00000030789	Itgax	AI449405|Cd11c|Cr4|N418	integrin alpha X	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5489193-4	chr19	5489092	5489292	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_153768)	promoter-TSS (NR_153768)	-813.0	NR_153769	71711.0	Mm.27697	NM_027877	ENSMUSG00000024906	Mus81	1200008A18Rik|AI182501|AW045863	MUS81 structure-specific endonuclease subunit	protein-coding	5.38820926551123	5.60938198522599	5.50606457544677	5.50717446677781	5.73377325771337	5.38511699117085	5.57036753130344	5.60504836240023	0.0942670428681663	0.715668499841239	0.998431161219273
Merged-chr1-172515573-4	chr1	172515486	172515686	+	998.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5544.0	NM_027972	71870.0	Mm.78373	NM_027972	ENSMUSG00000026546	Cfap45	1700028D05Rik|Ccdc19|Nesg1	cilia and flagella associated protein 45	protein-coding	3.60071488785802	3.34591587657975	3.13729548694448	3.23589973248304	3.45648474258081	3.36989454151488	3.16155544279523	3.25216414232277	-0.0488662586658319	0.929837946245807	0.998431161219273
Merged-chr3-152569367-4	chr3	152569273	152569473	+	896.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355635, intron 6 of 8)	intron (NM_001355635, intron 6 of 8)	-97540.0	NR_040386	99542.0	Mm.394921	NR_040386	ENSMUSG00000097745	AI115009	-	expressed sequence AI115009	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-11602001-2	chr4	11601901	11602101	+	612.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039556, intron 8 of 14)	intron (NM_001039556, intron 8 of 14)	22339.0	NM_001256142	100503583.0	Mm.249437	NM_001256142	ENSMUSG00000094595	Fsbp	-	fibrinogen silencer binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47687572-3	chr17	47687471	47687671	+	875.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045945)	promoter-TSS (NR_045945)	-39.0	NR_045945	100415787.0	Mm.392206	NR_045945	ENSMUSG00000084880	Tomm6os	Gm14872|Prickle4os	translocase of outer mitochondrial membrane 6, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-143180777-4	chr5	143180643	143180843	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001045482)	promoter-TSS (NM_001045482)	32.0	NM_001359235	57782.0	Mm.320419	NM_021326	ENSMUSG00000061898	Rbak	-	RB-associated KRAB zinc finger	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-32600588-1	chr11	32600488	32600688	+	572.0	f1_balb.idr	intron (NM_009288, intron 9 of 18)	intron (NM_009288, intron 9 of 18)	-41967.0	NM_001271348	103583.0	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91476547-3	chr16	91476437	91476637	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2B1|LTR|ERVL	-8678.0	NM_010508	15975.0	Mm.502	NM_010508	ENSMUSG00000022967	Ifnar1	Ifar|Ifnar|Ifrc|Infar	interferon (alpha and beta) receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-96935233-4	chr11	96935150	96935350	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_146026, exon 3 of 3)	3' UTR (NM_146026, exon 3 of 3)	5926.0	NM_146026	217138.0	Mm.342551	NM_146026	ENSMUSG00000047040	Prr15l	Atad4|BC022765|E230006A12Rik	proline rich 15-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3326960-2	chr19	3326860	3327060	+	610.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013495, intron 1 of 18)	intron (NM_013495, intron 1 of 18)	3659.0	NM_013495	12894.0	Mm.18522	NM_013495	ENSMUSG00000024900	Cpt1a	C730027G07|CPTI|Cpt1	carnitine palmitoyltransferase 1a, liver	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-55529488-2	chr4	55529388	55529588	+	856.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_010637, intron 4 of 4)	intron (NM_010637, intron 4 of 4)	2987.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-17695029-4	chr13	17694938	17695138	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138654)	promoter-TSS (NM_138654)	-273.0	NM_138654	192136.0	Mm.364180	NM_138654	ENSMUSG00000055137	Sugct	5033411D12Rik|D17907	succinyl-CoA glutarate-CoA transferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-64873561-2	chr16	64873461	64873661	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21560.0	NM_178647	106143.0	Mm.10160	NM_178647	ENSMUSG00000054604	Cggbp1	AA960172|AL023996|AW045841	CGG triplet repeat binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-30987105-4	chr13	30987008	30987208	+	975.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13061.0	NM_025588	66482.0	Mm.293510	NM_025588	ENSMUSG00000021357	Exoc2	2410030I24Rik|AI648199|Sec5|Sec5l1	exocyst complex component 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-29517336-4	chr6	29517227	29517427	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9298.0	NM_001311083	27056.0	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-75110349-2	chr8	75110249	75110449	+	770.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008566, exon 4 of 17)	exon (NM_008566, exon 4 of 17)	840.0	NM_008566	17218.0	Mm.5048	NM_008566	ENSMUSG00000005410	Mcm5	AA617332|AI324988|AL033333|Cdc46|Mcmd5|P1-CDC46	minichromosome maintenance complex component 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-89505044-4	chr13	89504934	89505134	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35602.0	NM_013500	12950.0	Mm.266790	NM_013500	ENSMUSG00000021613	Hapln1	BB099155|CLP|Crtl1|Crtl1l|LP|LP-1	hyaluronan and proteoglycan link protein 1	protein-coding	-2.18138529563533	-2.15523716995652	-2.1631445789866	-2.16963996020037	-2.05513010215571	-2.15352360143315	-2.16135451490766	-2.16847729006863	0.759018020146679	0.829933115115583	1
Merged-chr6-22343369-4	chr6	22343282	22343482	+	846.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138587, intron 1 of 9)	intron (NM_138587, intron 1 of 9)	12699.0	NM_138587	27999.0	Mm.490307	NM_138587	ENSMUSG00000029672	Fam3c	D6Wsu176e|Ilei	family with sequence similarity 3, member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-14291615-2	chr2	14291515	14291715	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008625, intron 12 of 29)	intron (NM_008625, intron 12 of 29)	30612.0	NR_030609	100124488.0		NR_030609	ENSMUSG00000077897	Mir511	Mirn511|mir-511|mmu-mir-511	microRNA 511	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-11429766-4	chr2	11429641	11429841	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31241.0	NR_040615	77543.0	Mm.490670	NR_040615	ENSMUSG00000102674	8030442B05Rik	-	RIKEN cDNA 8030442B05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-28757948-1	chr13	28757848	28758048	+	591.0	f0_balb.idr	intron (NR_045053, intron 3 of 8)	intron (NR_045053, intron 3 of 8)	-47075.0	NR_105787	102466635.0		NR_105787	ENSMUSG00000099158	Mir6368	Gm27800|mmu-mir-6368	microRNA 6368	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-46525887-4	chr17	46525817	46526017	+	711.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081335, exon 14 of 41)	exon (NM_001081335, exon 14 of 41)	20471.0	NM_001081335	78309.0	Mm.329076	NM_001081335	ENSMUSG00000040327	Cul9	1810035I07Rik|Cul-9|Parc|mKIAA0708	cullin 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-109066440-2	chr14	109066340	109066540	+	747.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	-152201.0	NM_199065	76965.0	Mm.257268	NM_199065	ENSMUSG00000075478	Slitrk1	3200001I04Rik	SLIT and NTRK-like family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-84751595-4	chr6	84751482	84751682	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177077, intron 19 of 21)	Lx5|LINE|L1	-157674.0	NM_001177713	232174.0	Mm.255246	NM_175475	ENSMUSG00000063415	Cyp26b1	CP26|P450RAI-2	cytochrome P450, family 26, subfamily b, polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-146233047-1	chr5	146232947	146233147	+	724.0	f0_balb.idr	intron (NM_153599, intron 1 of 12)	intron (NM_153599, intron 1 of 12)	1797.0	NM_153599	264064.0	Mm.260576	NM_153599	ENSMUSG00000029635	Cdk8	-	cyclin-dependent kinase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-32132602-2	chr5	32132502	32132702	+	608.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3870.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-46650204-4	chr4	46650123	46650323	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198664)	promoter-TSS (NM_198664)	-24.0	NM_198664	381605.0	Mm.331595	NM_198664	ENSMUSG00000039813	Tbc1d2	A630005A06Rik|BC022630|Gm1037|PARIS-1|PARIS1	TBC1 domain family, member 2	protein-coding	-0.944452312839821	-1.06980499840527	-1.08137418347786	-1.08830806243699	-1.09125475322374	-1.06729790773803	-0.492469820684107	-1.08794360978941	1.85122623007205	0.563032835033943	1
Merged-chr16-64935130-3	chr16	64935041	64935241	+	829.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008310, intron 2 of 2)	MLT1A1|LTR|ERVL-MaLR	83140.0	NM_178647	106143.0	Mm.10160	NM_178647	ENSMUSG00000054604	Cggbp1	AA960172|AL023996|AW045841	CGG triplet repeat binding protein 1	protein-coding	2.0798628725127	1.48418310822135	1.98780145197229	1.74053074972404	1.00929732736542	0.869676823419525	0.851915436637669	0.836421116257227	-4.47606060514777	0.00186905031090697	0.0317521361627655
Merged-chr3-79566846-4	chr3	79566754	79566954	+	961.9249880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162999, intron 1 of 16)	intron (NM_001162999, intron 1 of 16)	825.0	NM_001162999	329679.0	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-6467061-2	chr18	6466961	6467161	+	949.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007935, intron 1 of 13)	intron (NM_007935, intron 1 of 13)	23585.0	NR_035446	100316773.0		NR_035446	ENSMUSG00000084514	Mir1893	Mirn1893|mmu-mir-1893	microRNA 1893	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-59809838-4	chr11	59809774	59809974	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045686)	promoter-TSS (NR_045686)	165.0	NM_001271356	216805.0	Mm.339640	NM_146018	ENSMUSG00000032633	Flcn	AU014660|B430214A04Rik|Bhd|FLCL	folliculin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141631214-2	chr7	141631114	141631314	+	693.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357068, intron 21 of 21)	intron (NM_001357068, intron 21 of 21)	10513.0	NR_106030	102466798.0		NR_106030	ENSMUSG00000098759	Mir7063	Gm27654|mmu-mir-7063	microRNA 7063	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-103332199-2	chr15	103332099	103332299	+	807.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356627, intron 2 of 7)	intron (NM_001356627, intron 2 of 7)	2139.0	NM_001356627	29813.0	Mm.14099	NM_013866	ENSMUSG00000000552	Zfp385a	Hzf|Zfp385|Znf385a	zinc finger protein 385A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-80092225-1	chr15	80092125	80092325	+	692.0	f1_balb.idr	intron (NM_207708, intron 1 of 3)	intron (NM_207708, intron 1 of 3)	891.0	NM_207708	20972.0	Mm.230301	NM_009303	ENSMUSG00000022415	Syngr1	R75468|Syngr1b|p29	synaptogyrin 1	protein-coding	1.61938044282891	2.08543920056685	1.01669506143865	0.998417057775952	2.18754748481968	2.10254245460244	1.02182568791548	2.05630822202509	1.13790284171059	0.36119529308788	0.856978223659267
Merged-chr12-55484701-8	chr12	55484590	55484790	+	844.5339359999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7957.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98919716-2	chr11	98919616	98919816	+	643.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025779, intron 10 of 11)	B1_Mur4|SINE|Alu	11565.0	NM_011799	23834.0	Mm.20912	NM_011799	ENSMUSG00000017499	Cdc6	CDC18L	cell division cycle 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-95384348-2	chr1	95384248	95384448	+	627.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	70720.0	NM_026321	67698.0	Mm.272705	NM_026321	ENSMUSG00000051185	Fam174a	2310044D20Rik|Fam174|Naa6|Tmem157	family with sequence similarity 174, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-51943356-2	chr13	51943256	51943456	+	657.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	96681.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-82794709-2	chr1	82794609	82794809	+	633.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26253.0	NM_025453	66261.0	Mm.46325	NM_025453	ENSMUSG00000026149	Tm4sf20	1810018L02Rik	transmembrane 4 L six family member 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-104236097-4	chr12	104235986	104236186	+	992.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001353613)	promoter-TSS (NM_001353613)	-61.0	NM_001353612	20715.0	Mm.312628	NM_009251		Serpina3g	2A2|AI119734|Spi2-1|Spi2/eb.1|Spi2A|spi2	serine (or cysteine) peptidase inhibitor, clade A, member 3G	protein-coding	3.50447824313455	4.74781423108334	4.15287372213348	4.68297472571787	4.22570305913209	4.59488709376091	3.12372462542088	3.55400090191447	-0.478825025147296	0.341183736687878	0.842167861132319
Merged-chr10-11362455-2	chr10	11362355	11362555	+	631.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010146, intron 1 of 3)	intron (NM_010146, intron 1 of 3)	19010.0	NM_010146	13853.0	Mm.89946	NM_010146	ENSMUSG00000055493	Epm2a	TG-B|Tg(TcraK,TcrbK)TG-BFlv	epilepsy, progressive myoclonic epilepsy, type 2 gene alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-98072309-2	chr3	98072209	98072409	+	583.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010928, intron 3 of 33)	intron (NM_010928, intron 3 of 33)	58771.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117868406-2	chr11	117868306	117868506	+	796.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_027919, exon 7 of 7)	3' UTR (NM_027919, exon 7 of 7)	5120.0	NM_027919	71776.0	Mm.3200	NM_027919	ENSMUSG00000017713	Tha1	1300017K07Rik|GLY1	threonine aldolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-84082223-3	chr17	84082125	84082325	+	619.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045458, intron 2 of 5)	intron (NR_045458, intron 2 of 5)	3565.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31399551-4	chr14	31399499	31399699	+	877.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347585, intron 2 of 7)	RSINE1|SINE|B4	18078.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-79571102-2	chr3	79571002	79571202	+	717.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_152118, intron 1 of 1)	Looper|DNA|PiggyBac	2910.0	NR_152118	75879.0	Mm.410800	NR_152118		4930589L23Rik	-	RIKEN cDNA 4930589L23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119022926-4	chr11	119022815	119023015	+	918.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007623)	promoter-TSS (NM_007623)	-106.0	NM_007623	12416.0	Mm.14547	NM_007623	ENSMUSG00000025577	Cbx2	M33|MOD2|pc	chromobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-31143647-2	chr2	31143547	31143747	+	694.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1639.0	NM_001038700	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-66068070-2	chr5	66067970	66068170	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_139065, intron 2 of 6)	intron (NM_139065, intron 2 of 6)	30109.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-8846675-4	chr17	8846569	8846769	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011866, intron 1 of 21)	intron (NM_011866, intron 1 of 21)	-3316.0	NM_001347321	23984.0	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	3.16208858726919	3.23643402164149	3.75604628904236	4.29213547805018	3.80045265185008	3.48217759655742	3.36557936287751	3.92440855131749	-0.0455824193862969	0.932037016038715	0.998431161219273
Merged-chr5-76951255-4	chr5	76951167	76951367	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356973)	promoter-TSS (NM_001356973)	-35.0	NM_001356974	67054.0	Mm.182931	NM_025939	ENSMUSG00000029247	Paics	2610511I09Rik|ADE2H1|AIRC|PAIS	phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165919954-2	chr2	165919854	165920054	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35116.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-71053657-2	chr3	71053572	71053772	+	917.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-246381.0	NR_040556	625901.0	Mm.366028	NR_040556	ENSMUSG00000097252	Gm6634	EG625901	predicted gene 6634	ncRNA	-1.50811478453619	-0.99851579554048	-1.48484165847197	-1.49312904261012	-1.50577282675516	-1.47256636097272	-1.48255773576353	-1.49164560481169	-2.24133836997777	0.518237887813808	1
Merged-chr14-70597277-2	chr14	70597135	70597335	+	956.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_194345, intron 1 of 16)	intron (NM_194345, intron 1 of 16)	2600.0	NM_194345	239170.0	Mm.247582	NM_194345	ENSMUSG00000022095	Fam160b2	G430067P06Rik|Rai16	family with sequence similarity 160, member B2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-22225183-1	chr17	22225083	22225283	+	811.0	f0_c57.idr	intron (NM_001205095, intron 1 of 4)	Lx2|LINE|L1	431.0	NM_001205095	240038.0	Mm.227945	NM_001205095	ENSMUSG00000096433	Zfp994	EG240038|Gm4944	zinc finger protein 994	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-81784843-1	chr7	81784743	81784943	+	721.0	f1_c57bl6.idr	intron (NM_026077, intron 3 of 4)	ERVB7_4-LTR_MM|LTR|ERVK	4610.0	NM_026077	67290.0	Mm.248391	NM_026077	ENSMUSG00000025102	3110040N11Rik	AI851475	RIKEN cDNA 3110040N11 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-13006782-2	chr10	13006682	13006882	+	564.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-1668.0	NM_175102	66125.0	Mm.29743	NM_175102	ENSMUSG00000078348	Sf3b5	10kDa|1110005L13Rik|AU043053|Sf3b10	splicing factor 3b, subunit 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-5188172-4	chr15	5188071	5188271	+	904.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355621, intron 2 of 5)	intron (NM_001355621, intron 2 of 5)	2611.0	NM_001355621	67515.0	Mm.254979	NM_026213	ENSMUSG00000022151	Ttc33	2410099M07Rik|2900001O04Rik|AI507072|AW538342|Osrf	tetratricopeptide repeat domain 33	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-116724670-4	chr6	116724565	116724765	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7907.0	NM_178768	319776.0	Mm.133120	NM_178768	ENSMUSG00000048108	Tmem72	C230095G01Rik	transmembrane protein 72	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-86536194-1	chr6	86536094	86536294	+	545.0	f1_balb.idr	intron (NR_037961, intron 3 of 4)	intron (NR_037961, intron 3 of 4)	8793.0	NR_037961	72012.0	Mm.349174	NR_037960	ENSMUSG00000097048	1600020E01Rik	-	RIKEN cDNA 1600020E01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-45475888-2	chr17	45475788	45475988	+	594.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027649)	promoter-TSS (NM_027649)	-950.0	NM_001357831	71020.0	Mm.44257	NM_027649	ENSMUSG00000023935	Spats1	1700011H05Rik|4933400B06Rik|Ddip|Srsp1	spermatogenesis associated, serine-rich 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-5509980-2	chr11	5509882	5510082	+	975.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10659.0	NM_013842	22433.0	Mm.469937	NM_013842	ENSMUSG00000020484	Xbp1	D11Ertd39e|TREB-5|TREB5|XBP-1	X-box binding protein 1	protein-coding	1.62576770950608	2.65121071480774	1.45455190641398	1.21314394974958	1.86979244390472	1.02280225127939	0.997233386130949	2.34313633841483	-0.448828682983963	0.709305013121239	0.998431161219273
Merged-chr15-93268225-4	chr15	93268119	93268319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346785, intron 1 of 7)	intron (NM_001346785, intron 1 of 7)	6960.0	NM_001357006	223827.0	Mm.22819	NM_001033275	ENSMUSG00000036197	Gxylt1	Glt8d3|Gm1228|Gm87	glucoside xylosyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44971307-2	chr7	44971207	44971407	+	862.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001252470, exon 4 of 19)	exon (NM_001252470, exon 4 of 19)	3544.0	NM_001357670	78070.0	Mm.231465	NM_153679	ENSMUSG00000007783	Cpt1c	6530437J22Rik|9630004I06Rik|CPT I-C|CPT IC|CPT1-B|CPTI-B	carnitine palmitoyltransferase 1c	protein-coding	0.562681938545611	2.17812390212443	0.604207817588999	0.588997748085505	0.969885750577624	1.84307316208558	0.608474295822128	1.34677998121301	0.122153778375575	0.937635576083138	0.998431161219273
Merged-chr1-58022500-2	chr1	58022400	58022600	+	765.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177867, intron 5 of 5)	RMER15|LTR|ERVL	-7469.0	NM_009676	11761.0	Mm.26787	NM_009676	ENSMUSG00000063558	Aox1	AI196512|AI255253|Ao|Aox-1|Aox-2|Aox2|Moro|Ro	aldehyde oxidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128371019-3	chr2	128370928	128371128	+	873.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028590, intron 1 of 2)	intron (NR_028590, intron 1 of 2)	58323.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	-0.71799741296482	-0.70708557642391	-0.710658121670512	-0.39858988842304	-0.717315679162312	-0.706280611168025	-0.0081218306882751	-0.712934152705969	1.42720281504518	0.625386426793862	1
Merged-chr6-83598205-4	chr6	83598095	83598295	+	989.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25691.0	NM_001362080	70527.0	Mm.32801	NM_024239	ENSMUSG00000006906	Stambp	5330424L14Rik|5730422L11Rik|AW107289|Amsh|mKIAA4198	STAM binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-184479900-2	chr1	184479800	184480000	+	703.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	77791.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53228673-4	chr4	53228573	53228773	+	909.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17523.0	NR_040665	78180.0	Mm.243847	NR_040665	ENSMUSG00000086947	4930522O17Rik	-	RIKEN cDNA 4930522O17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26536406-1	chr17	26536306	26536506	+	604.0	f1_c57bl6.idr	Intergenic	Intergenic	-25106.0	NM_026170	67458.0	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	2.5121684426607	2.47672445586762	2.88961518147817	2.64330933705766	1.82031444090335	2.35609660266763	2.41411376209245	2.45744803272752	-0.794530157443127	0.310128923221064	0.811012820576792
Merged-chr12-70247298-2	chr12	70247198	70247398	+	783.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110202, intron 11 of 11)	intron (NM_001110202, intron 11 of 11)	19457.0	NR_045174	414124.0	Mm.416164	NR_045174	ENSMUSG00000085298	F730035M05Rik	-	RIKEN cDNA F730035M05 gene	ncRNA	0.79602192436982	0.740448366438533	1.35064741723956	0.507902029090794	0.926387240601396	0.528043225084983	0.517966528085371	1.39407309781577	0.0475931734847744	0.976760933656489	0.998431161219273
Merged-chr8-123045066-2	chr8	123044990	123045190	+	919.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_045268)	TTS (NR_045268)	2515.0	NR_045268	100503178.0	Mm.294938	NR_045268	ENSMUSG00000099881	2810013P06Rik	-	RIKEN cDNA 2810013P06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-96160683-4	chr5	96160568	96160768	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144910, intron 1 of 11)	intron (NM_144910, intron 1 of 11)	879.0	NM_001285511	231464.0	Mm.28374	NM_144910	ENSMUSG00000034724	Cnot6l	4932442K20Rik	CCR4-NOT transcription complex, subunit 6-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114712347-2	chr11	114712247	114712447	+	601.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_053273, intron 13 of 13)	intron (NM_053273, intron 13 of 13)	-15065.0	NM_001034878	432611.0	Mm.212764	NM_001034878	ENSMUSG00000034706	Dnaic2	C030015H18Rik|Dnai2|Gm728|b2b3405Clo	dynein, axonemal, intermediate chain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-156940886-1	chr1	156940786	156940986	+	562.0	f1_balb.idr	Intergenic	Intergenic	-1260.0	NM_001357391	78255.0	Mm.28376	NM_023884	ENSMUSG00000026594	Ralgps2	1810020P17Rik|2210408F11Rik|4921528G01Rik|9130014M22Rik|AU043409|AW046161	Ral GEF with PH domain and SH3 binding motif 2	protein-coding	-0.130350551365798	-0.417857644973165	-0.423197318161278	-0.427347202734449	0.646691829001007	-0.416659974288565	-0.422015859948035	-0.426620298621078	2.3110597806638	0.377477195361251	1
Merged-chr11-61839524-7	chr11	61839407	61839607	+	973.26532	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013881, intron 5 of 26)	B1_Mur4|SINE|Alu	15585.0	NM_013881	29869.0	Mm.162025	NM_013881	ENSMUSG00000004798	Ulk2	A830085I22Rik|AU015340|Unc51.2|mKIAA0623	unc-51 like kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-142295054-4	chr3	142294951	142295151	+	933.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001190852, intron 7 of 15)	intron (NM_001190852, intron 7 of 15)	96799.0	NM_022554	56376.0	Mm.117709	NM_019808	ENSMUSG00000028273	Pdlim5	1110001A05Rik|AI987914|C87059|Enh|Enh1|Enh2|Enh3|LIM	PDZ and LIM domain 5	protein-coding	2.70394218763072	4.20316236264461	3.96334342845402	3.96722962428229	3.30855556548235	3.43323044830249	3.31768084460503	3.0005218616799	-0.822196934444984	0.147208186226314	0.597466522728415
Merged-chr8-26118769-4	chr8	26118645	26118845	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357292)	promoter-TSS (NM_001357292)	479.0	NM_207659	320191.0	Mm.334464	NM_207659	ENSMUSG00000037234	Hook3	5830454D03Rik|AI317159|E330005F07Rik	hook microtubule tethering protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-105876446-4	chr5	105876361	105876561	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018759)	promoter-TSS (NM_018759)	-107.0	NR_030777	54367.0	Mm.248876	NM_018759	ENSMUSG00000029290	Zfp326	5730470H14Rik|ZAN75|Znf326	zinc finger protein 326	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-64155858-2	chr13	64155741	64155941	+	776.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID2|SINE|ID	-2642.0	NM_175494	238673.0	Mm.300065	NM_175494	ENSMUSG00000044934	Zfp367	8030486J21Rik|ZFF29a|ZFF29b|Znf367	zinc finger protein 367	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16022724-1	chr7	16022624	16022824	+	565.666687	f1_balb.idr	Intergenic	B1F2|SINE|Alu	-23229.0	NM_001081418	243842.0	Mm.440249	NM_001081418	ENSMUSG00000070808	Bicra	Gltscr1	BRD4 interacting chromatin remodeling complex associated protein	protein-coding	-0.0843138070364939	-0.0660443297188809	-0.071999752735227	-0.076614074604606	0.207774750657279	-0.0647057123895053	0.831679014760633	0.381285997223508	4.06331993602577	0.0626628359658404	1
Merged-chr6-71456074-2	chr6	71455974	71456174	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MDa|LINE|L1	-15437.0	NM_024288	68477.0	Mm.28474	NM_024288	ENSMUSG00000002222	Rmnd5a	1110007A06Rik|AJ237586|AW125795|Gid2|MTA.D02.090	required for meiotic nuclear division 5 homolog A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-47676834-2	chr8	47676734	47676934	+	885.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-1675.0	NM_023503	69260.0	Mm.430733	NM_023503	ENSMUSG00000063049	Ing2	2810011M06Rik|Ing1l|Ing2b|P33ING2	inhibitor of growth family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132807946-2	chr4	132807846	132808046	+	747.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11582.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-114138692-2	chr10	114138592	114138792	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4A|LINE|L1	662678.0	NM_146241	237553.0	Mm.445550	NM_146241	ENSMUSG00000050663	Trhde	9330155P21Rik	TRH-degrading enzyme	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-53771566-2	chr9	53771466	53771666	+	784.166687	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028060)	promoter-TSS (NM_028060)	31.0	NM_028060	72022.0	Mm.26159	NM_028060	ENSMUSG00000042195	Slc35f2	1500009K05Rik|AU019213	solute carrier family 35, member F2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-77875014-4	chr15	77874905	77875105	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32830.0	NM_022410	17886.0	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-114296181-2	chr6	114296081	114296281	+	589.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178703, intron 1 of 15)	intron (NM_178703, intron 1 of 15)	13546.0	NM_178703	232333.0	Mm.5260	NM_178703	ENSMUSG00000030310	Slc6a1	A730043E01|GABATHG|GABATR|GAT-1|Gabt|Gabt1|Gat1|XT-1|Xtrp1	solute carrier family 6 (neurotransmitter transporter, GABA), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-55645102-4	chr4	55644992	55645192	+	956.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-112617.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	2.39109384968828	1.84478599145844	1.42325024684755	2.29189576286688	1.51474276286272	1.47325702022493	1.63010170153534	2.46534848280048	-0.515314492207467	0.615043553239359	0.977303445845731
Merged-chr8-116922476-2	chr8	116922376	116922576	+	765.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028131, intron 2 of 11)	intron (NM_028131, intron 2 of 11)	736.0	NM_028131	72155.0	Mm.23185	NM_028131	ENSMUSG00000031756	Cenpn	2610510J17Rik|AI426416|AW545024	centromere protein N	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-56953343-4	chr4	56953235	56953435	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-5906.0	NM_175518	242474.0	Mm.296632	NM_175518	ENSMUSG00000055296	Tmem245	A630051L19Rik|AI957324|D730040F13Rik	transmembrane protein 245	protein-coding	2.79931744963214	4.15304674735206	2.25465578224708	2.8424866355012	4.23841167922454	3.85933241873648	4.10636275869637	3.46916020484933	1.09433629758148	0.0712852423073215	0.402421739587473
Merged-chr2-118536702-2	chr2	118536670	118536870	+	991.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001331221, intron 3 of 3)	intron (NM_001331221, intron 3 of 3)	7817.0	NR_138603	171543.0	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	1.48965119289344	1.57690620230732	1.06186103674638	1.93028354137805	0.820794660607061	0.867897475793068	1.24702955128408	1.47803614286138	-1.60008831607826	0.227673280630561	0.720995250870592
Merged-chr16-8831071-4	chr16	8830978	8831178	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081400, intron 1 of 3)	CpG	978.0	NM_001081400	69053.0	Mm.390868	NM_001081400	ENSMUSG00000022507	1810013L24Rik	1110017P05Rik|3010002C02Rik|AA792997|AW124177|Gm19906|R74903	RIKEN cDNA 1810013L24 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-103021495-4	chr11	103021407	103021607	+	997.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4360.0	NM_026551	68087.0	Mm.277449	NM_026551	ENSMUSG00000020935	Dcakd	3010024O21Rik|6720485C15Rik|AI849483	dephospho-CoA kinase domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-56699880-4	chr19	56699783	56699983	+	981.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22489.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-151177883-2	chr1	151177783	151177983	+	690.900024	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39849.0	NR_038011	402734.0	Mm.337666	NR_038011		C730036E19Rik	lncLSTR	RIKEN cDNA C730036E19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-92551099-3	chr7	92550992	92551192	+	852.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10057.0	NM_025515	66365.0	Mm.21173	NM_025515	ENSMUSG00000030613	Ccdc90b	2310015N07Rik|C86558	coiled-coil domain containing 90B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-103891853-2	chr14	103891753	103891953	+	598.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47377.0	NM_001136061	13618.0	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-103213713-4	chr3	103213614	103213814	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER4B|LTR|ERVK	42059.0	NM_001356331	68183.0	Mm.104919	NM_026602	ENSMUSG00000005687	Bcas2	6430539P16Rik|AI132645|C76366|C80030	breast carcinoma amplified sequence 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-146773235-2	chr5	146773135	146773335	+	921.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011669, intron 1 of 8)	intron (NM_011669, intron 1 of 8)	21721.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-35213933-2	chr2	35213833	35214033	+	562.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-12813.0	NM_026697	68365.0	Mm.198264	NM_026697	ENSMUSG00000026878	Rab14	0610030G24Rik|2810475J17Rik|A830021G03Rik|AI314285|AI649155|D030017L14Rik	RAB14, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-106549793-2	chr3	106549693	106549893	+	709.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286987, intron 1 of 7)	intron (NM_001286987, intron 1 of 7)	-1991.0	NM_133869	99712.0	Mm.429443	NM_133869	ENSMUSG00000040774	Cept1	9930118K05Rik|mCEPT1	choline/ethanolaminephosphotransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70490393-4	chr11	70490276	70490476	+	955.2666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR11A2|LTR|ERVK	-14898.0	NM_029360	75604.0	Mm.24400	NM_029360	ENSMUSG00000018919	Tm4sf5	2010003F10Rik|AI323987	transmembrane 4 superfamily member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-69898303-9	chr2	69898104	69898304	+	999.111084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177783, intron 1 of 38)	intron (NM_177783, intron 1 of 38)	958.0	NM_177783	68795.0	Mm.314576	NM_177783	ENSMUSG00000044308	Ubr3	1110059H15Rik|4833421P10Rik|A130030D10Rik|AA409735|AA414972|AA422631|AI646861|AU016126|Zfp650|Znf650	ubiquitin protein ligase E3 component n-recognin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-64432405-4	chr13	64432298	64432498	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053180)	promoter-TSS (NM_053180)	-155.0	NM_053180	105278.0	Mm.74982	NM_053180	ENSMUSG00000021483	Cdk20	4932702G04Rik|AU019450|AW558027|CDCH|Ccrk|PNQLARE|p42	cyclin-dependent kinase 20	protein-coding	4.9570081015104	5.47813363141956	5.18983247998543	5.25128654793181	5.29484461087653	5.4150579361217	4.87504604476766	5.54194155745285	0.0925666060957856	0.75663191437628	0.998431161219273
Merged-chr10-58495789-2	chr10	58495689	58495889	+	574.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-2148.0	NM_001162956	76138.0	Mm.211744	NM_001162956	ENSMUSG00000038010	Ccdc138	6230424H07Rik|BC042726	coiled-coil domain containing 138	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-16899718-2	chr12	16899605	16899805	+	682.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009072, intron 1 of 32)	B1_Mus2|SINE|Alu	4727.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	0.594225873143662	0.0535108581910153	0.50061470620726	0.0436338191822493	0.686691093412005	0.0547673390883223	0.0491657457368571	0.0443855007597219	-0.511684063244966	0.818049209578684	1
Merged-chr17-17525760-1	chr17	17525660	17525860	+	580.0	f1_c57bl6.idr	Intergenic	Intergenic	98729.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	2.10645848220964	1.75940530252805	2.76326446505497	1.19189637265348	1.57882950378671	3.03256674234722	1.89621598027573	2.12094345784646	0.434238117219073	0.666499985799462	0.992515300319318
Merged-chr1-34441330-2	chr1	34441230	34441430	+	976.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178601, intron 2 of 8)	B3A|SINE|B2	1501.0	NM_178601	27993.0	Mm.289667	NM_178601	ENSMUSG00000026127	Imp4	AA409888|AV031295|D1Wsu40e	IMP4, U3 small nucleolar ribonucleoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-59815611-4	chr4	59815520	59815720	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172468, intron 1 of 8)	intron (NM_172468, intron 1 of 8)	9970.0	NM_172468	209131.0	Mm.259705	NM_172468	ENSMUSG00000028385	Snx30	4732481H14Rik|C030041J06Rik	sorting nexin family member 30	protein-coding	0.664852189402387	0.921724852662468	0.300453081525069	0.927254370388164	0.673667258525503	0.3087715218001	0.3019511362207	0.296125963608441	-2.17603249786915	0.257789329608173	1
Merged-chr13-95778946-4	chr13	95778872	95779072	+	987.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027711, intron 2 of 35)	intron (NM_027711, intron 2 of 35)	82052.0	NM_010170	14064.0	Mm.440952	NM_010170	ENSMUSG00000021675	F2rl2	F730031A08|PAR3	coagulation factor II (thrombin) receptor-like 2	protein-coding	2.19458267436648	2.80719493312456	2.07234726299678	2.01082617449598	1.32780493487085	2.02771472629253	1.17068269045078	1.58294592415824	-2.04865795212564	0.0454332378809048	0.306930173476968
Merged-chr15-8109191-4	chr15	8109073	8109273	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133227)	promoter-TSS (NM_133227)	-140.0	NM_133227	170762.0	Mm.295168	NM_133227	ENSMUSG00000022142	Nup155	D930027M19Rik|mKIAA0791	nucleoporin 155	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-83690055-2	chr12	83689955	83690155	+	616.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008943, intron 1 of 11)	intron (NM_008943, intron 1 of 11)	1492.0	NM_008943	19164.0	Mm.998	NM_008943	ENSMUSG00000019969	Psen1	Ad3h|PS-1|PS1|S182	presenilin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-97376121-4	chr7	97376008	97376208	+	973.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199035, intron 2 of 12)	intron (NM_199035, intron 2 of 12)	4491.0	NM_199035	381903.0	Mm.279683	NM_199035	ENSMUSG00000035704	Alg8	AI447372|Gm1089	asparagine-linked glycosylation 8 (alpha-1,3-glucosyltransferase)	protein-coding	3.2654954590687	3.50467751167409	3.2214971768035	4.01808291195095	2.70225543599454	1.69911685043969	3.05166143424228	2.95508640229028	-1.40842850485343	0.0341564726194009	0.260692976137132
Merged-chr2-83644449-4	chr2	83644351	83644551	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026934)	promoter-TSS (NM_026934)	-127.0	NM_026934	69082.0	Mm.27804	NM_026934	ENSMUSG00000027091	Zc3h15	1700006A17Rik|1810012H02Rik|2610312B22Rik|FM22|Ierepo4	zinc finger CCCH-type containing 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-21183591-2	chr2	21183491	21183691	+	648.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027728, intron 4 of 4)	intron (NM_027728, intron 4 of 4)	21774.0	NM_027728	71233.0	Mm.27658	NM_027728	ENSMUSG00000026679	Enkur	4933434I06Rik|AU016229	enkurin, TRPC channel interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-55837583-2	chr1	55837483	55837683	+	631.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-93658.0	NR_045837	329159.0	Mm.98697	NR_045837	ENSMUSG00000099950	9130227L01Rik	-	RIKEN cDNA 9130227L01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-50228878-4	chr11	50228810	50229010	+	885.56665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145926, intron 1 of 14)	intron (NM_145926, intron 1 of 14)	-3335.0	NR_105884	102466765.0		NR_105884	ENSMUSG00000098474	Mir6919	Gm27889|mmu-mir-6919	microRNA 6919	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-22655791-2	chr16	22655691	22655891	+	766.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346673, intron 1 of 23)	intron (NM_001346673, intron 1 of 23)	1440.0	NM_138650	110197.0	Mm.194986	NM_138650	ENSMUSG00000022861	Dgkg	2900055E17Rik|90kDa|AI854428|Dagk3|E430001K23Rik|mKIAA4131	diacylglycerol kinase, gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-14641638-4	chr3	14641547	14641747	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024495)	promoter-TSS (NM_024495)	-80.0	NM_024495	71934.0	Mm.158776	NM_024495	ENSMUSG00000027555	Car13	2310075C21Rik|Ca13	carbonic anhydrase 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-76373148-4	chr16	76373042	76373242	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173440)	promoter-TSS (NM_173440)	-93.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-120114238-2	chr10	120114138	120114338	+	997.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1273.0	NM_080446	117599.0	Mm.214703	NM_080446	ENSMUSG00000020228	Helb	AI447783|D10Ertd664e	helicase (DNA) B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30769484-3	chr2	30769411	30769611	+	773.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	32226.0	NM_198000	73598.0	Mm.34166	NM_198000	ENSMUSG00000044320	1700001O22Rik	1700113K14Rik|4930549G18Rik	RIKEN cDNA 1700001O22 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119547487-3	chr11	119547434	119547634	+	757.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008730, exon 1 of 5)	exon (NM_008730, exon 1 of 5)	286.0	NM_008730	18164.0	Mm.5142	NM_008730	ENSMUSG00000025582	Nptx1	D11Bwg1004e|Np1	neuronal pentraxin 1	protein-coding	0.559528756364766	0.434852409954891	0.4269638397432	1.0693719797796	0.694882722261373	1.07569048059281	0.428706141870991	0.978132225280459	0.879550262286184	0.606716227733706	1
Merged-chr11-9136658-1	chr11	9136558	9136758	+	546.0	f0_balb.idr	TTS (NM_001159402)	TTS (NM_001159402)	18151.0	NM_001159402	22271.0	Mm.4610	NM_009477	ENSMUSG00000020407	Upp1	AI325217|UPase|UdRPase|Up|Upp	uridine phosphorylase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-101958862-4	chr12	101958770	101958970	+	998.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001167914)	promoter-TSS (NM_001167914)	-627.0	NM_001167914	110616.0	Mm.271914	NM_029705	ENSMUSG00000021189	Atxn3	2210008M02Rik|AI463012|AI647473|ATX3|MJD1|Mjd|Sca3|ataxin-3	ataxin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-77900898-2	chr14	77900798	77900998	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-3341.0	NM_178825	108670.0	Mm.68134	NM_029495	ENSMUSG00000022014	Epsti1	2310046K10Rik|5033415K03Rik|BRESI1	epithelial stromal interaction 1 (breast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21959358-2	chr9	21959258	21959458	+	671.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_010149, exon 8 of 8)	exon (NM_010149, exon 8 of 8)	-3352.0	NR_132099	100049077.0	Mm.46647	NR_132099		Gm45914	-	predicted gene, 45914	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-148918605-4	chr3	148918502	148918702	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081298, intron 1 of 23)	URR1B|DNA|hAT-Charlie	36033.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-6519634-1	chr15	6519534	6519734	+	692.599976	f0_balb.idr	Intergenic	Intergenic	-60213.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191072696-3	chr1	191072613	191072813	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198654, intron 4 of 5)	intron (NM_198654, intron 4 of 5)	9692.0	NM_198654	381318.0	Mm.32504	NM_198654	ENSMUSG00000062510	Nsl1	4833432M17Rik|AI451597|Gm105|Gm984	NSL1, MIS12 kinetochore complex component	protein-coding	4.19829480083166	3.77607474669516	4.21721940161136	5.21531828762137	3.93063763458334	2.93669552416927	3.99299873062027	4.47314997616981	-0.691873392055834	0.170018814139599	0.63750671805688
Merged-chr8-47990553-4	chr8	47990432	47990632	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133791)	promoter-TSS (NM_133791)	19.0	NM_133791	52357.0	Mm.235074	NM_133791	ENSMUSG00000031563	Wwc2	5330431C14Rik|AU022508|C85457|D8Ertd594e	WW, C2 and coiled-coil domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-29307908-4	chr7	29307801	29308001	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013874, intron 1 of 11)	CpG	3896.0	NM_013874	29861.0	Mm.101885	NM_013874	ENSMUSG00000030584	Dpf1	Neud4	D4, zinc and double PHD fingers family 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-71931238-3	chr6	71931131	71931331	+	790.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009088, intron 11 of 33)	intron (NM_009088, intron 11 of 33)	22178.0	NM_009088	20019.0	Mm.135581	NM_009088	ENSMUSG00000049553	Polr1a	194kDa|2900087K15Rik|3010014K16Rik|RPA194|Rpo1-4|mRPA1	polymerase (RNA) I polypeptide A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-73176732-4	chr15	73176638	73176838	+	933.31665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153178, intron 1 of 18)	intron (NM_153178, intron 1 of 18)	8209.0	NM_153178	239528.0	Mm.23095	NM_153178	ENSMUSG00000036698	Ago2	1110029L17Rik|2310051F07Rik|AI225898|AL022874|AW546247|Eif2c2|Gerp95|Gm10365|mKIAA4215	argonaute RISC catalytic subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-47506825-4	chr14	47506730	47506930	+	924.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027414, intron 2 of 5)	intron (NR_027414, intron 2 of 5)	34269.0	NM_001146085	78938.0	Mm.11935	NM_030236	ENSMUSG00000037536	Fbxo34	2900057B08Rik|5830426G16Rik	F-box protein 34	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-32164128-4	chr16	32164023	32164223	+	842.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146069, intron 1 of 3)	intron (NM_146069, intron 1 of 3)	1471.0	NM_146069	224109.0	Mm.33498	NM_146069	ENSMUSG00000052384	Nrros	E430025L02Rik|Lrcc33|Lrrc33	negative regulator of reactive oxygen species	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76306352-2	chr15	76306252	76306452	+	686.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_153122, exon 3 of 27)	exon (NM_153122, exon 3 of 27)	893.0	NM_153122	75475.0	Mm.322738	NM_153122	ENSMUSG00000022562	Oplah	1700010G02Rik	5-oxoprolinase (ATP-hydrolysing)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-40219413-4	chr18	40219326	40219526	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023311)	promoter-TSS (NM_023311)	-27.0	NM_023311	67180.0	Mm.270382	NM_023311	ENSMUSG00000024487	Yipf5	2610311I19Rik|AA408236|Yip1a	Yip1 domain family, member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118208378-3	chr11	118208272	118208472	+	864.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	4370.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-57466311-4	chr9	57466207	57466407	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301635, intron 1 of 5)	intron (NM_001301635, intron 1 of 5)	1753.0	NM_001301634	56807.0	Mm.102278	NM_020270	ENSMUSG00000040722	Scamp5	Sc5	secretory carrier membrane protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44232687-4	chr9	44232520	44232720	+	870.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007619, intron 1 of 15)	MIRb|SINE|MIR	1426.0	NM_007619	12402.0	Mm.266871	NM_007619	ENSMUSG00000034342	Cbl	4732447J05Rik|Cbl-2|c-Cbl|cbl	Casitas B-lineage lymphoma	protein-coding	1.71255318867527	2.07434023736827	2.83395657520614	1.209270593891	2.27348406353457	2.09001461997494	2.15083538266977	1.64640425620668	-0.13206232105977	0.895778765152843	0.998431161219273
Merged-chr2-68962240-2	chr2	68962140	68962340	+	766.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347161, intron 3 of 10)	intron (NM_001347161, intron 3 of 10)	100799.0	NM_001347161	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-20228475-1	chr12	20228375	20228575	+	544.0	f1_balb.idr	Intergenic	MMERGLN-int|LTR|ERV1	587304.0	NR_015521	69513.0	Mm.273972	NR_015521	ENSMUSG00000099759	1700030C10Rik	-	RIKEN cDNA 1700030C10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81311762-2	chr10	81311662	81311862	+	690.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001293647, intron 9 of 17)	intron (NM_001293647, intron 9 of 17)	-9341.0	NM_027381	70312.0	Mm.87628	NM_027381	ENSMUSG00000034889	Cactin	2510012J08Rik	cactin, spliceosome C complex subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150603610-3	chr4	150603535	150603735	+	787.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 12 of 22)	intron (NM_001085492, intron 12 of 22)	48539.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	-0.477188435757359	-0.465501932891511	0.194856595512309	-0.171084165619508	-0.476460806778427	-0.46463640539356	-0.28915975512805	-0.471776383263547	-2.54252139293994	0.321190634401955	1
Merged-chr10-79764311-1	chr10	79764211	79764411	+	543.0	f1_c57bl6.idr	intron (NR_027505, intron 1 of 7)	intron (NR_027505, intron 1 of 7)	2641.0	NM_144528	70294.0	Mm.466670	NM_144528	ENSMUSG00000035890	Rnf126	2610010O19Rik	ring finger protein 126	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-34692734-2	chr8	34692634	34692834	+	686.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52418.0	NR_040706	330734.0	Mm.149998	NR_040706	ENSMUSG00000109819	B930018H19Rik	B930018H19	RIKEN cDNA B930018H19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-22437279-2	chr17	22437179	22437379	+	742.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198003, intron 2 of 6)	L1_Mus2|LINE|L1	13077.0	NM_001331198	74149.0	Mm.30767	NM_198003	ENSMUSG00000071266	Zfp946	1300003B13Rik	zinc finger protein 946	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-77928183-4	chr14	77928074	77928274	+	910.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029495, intron 2 of 11)	intron (NM_029495, intron 2 of 11)	23935.0	NM_029495	108670.0	Mm.68134	NM_029495	ENSMUSG00000022014	Epsti1	2310046K10Rik|5033415K03Rik|BRESI1	epithelial stromal interaction 1 (breast)	protein-coding	3.28919804978365	2.45754901577046	3.05296906999835	3.46217268690483	2.48867700468195	3.95668356437474	3.58575263455161	2.62355659153748	0.30210668321815	0.651965390329328	0.986416236213275
Merged-chr17-66710745-4	chr17	66710655	66710855	+	945.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 23 of 32)	intron (NM_001357625, intron 23 of 32)	-3701.0	NR_151453	102639882.0	Mm.443262	NR_151453		1700016K05Rik	-	RIKEN cDNA 1700016K05 gene	ncRNA	1.53502512714774	0.722882739350377	0.886927072533323	1.13445089844324	1.08189764951803	1.54068389504694	0.716330575061519	0.709151630327296	-0.220014993540212	0.887005651692096	0.998431161219273
Merged-chr6-85391947-1	chr6	85391847	85392047	+	584.0	f0_balb.idr	Intergenic	Intergenic	-17313.0	NM_001003955	52055.0	Mm.220334	NM_177466	ENSMUSG00000051343	Rab11fip5	9130206P09Rik|C75969|D6Ertd32e|GAF1|RIP11	RAB11 family interacting protein 5 (class I)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-12004925-3	chr19	12004853	12005053	+	919.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER34A1|LTR|ERV1	31787.0	NM_146680	258675.0	Mm.271517	NM_146680	ENSMUSG00000067529	Olfr1423	MOR239-3	olfactory receptor 1423	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-8942416-2	chr3	8942316	8942516	+	609.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025263, intron 4 of 6)	RMER1B|Other|Other	-18559.0	NM_025434	66230.0	Mm.38460	NM_025434	ENSMUSG00000040269	Mrps28	1500012D08Rik|AW061224	mitochondrial ribosomal protein S28	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-8899427-2	chr4	8899327	8899527	+	710.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	148103.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-74646330-3	chr14	74646240	74646440	+	943.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172812, intron 2 of 2)	intron (NM_172812, intron 2 of 2)	5466.0	NM_172812	15558.0	Mm.214351	NM_172812	ENSMUSG00000034997	Htr2a	5-HT-2|5-HT-2A|E030013E04|Htr-2|Htr2	5-hydroxytryptamine (serotonin) receptor 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-94364145-3	chr8	94364048	94364248	+	920.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019415, intron 24 of 24)	intron (NM_019415, intron 24 of 24)	-22281.0	NM_001357205	64209.0	Mm.29151	NM_022331	ENSMUSG00000031770	Herpud1	Herp|Mifl|SUP	homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81082522-2	chr15	81082422	81082622	+	576.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001082536, intron 2 of 13)	intron (NM_001082536, intron 2 of 13)	22525.0	NM_153049	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-45609517-1	chr16	45609417	45609617	+	751.0	f1_c57bl6.idr	promoter-TSS (NM_008099)	promoter-TSS (NM_008099)	-923.0	NM_008099	14525.0	Mm.4799	NM_008099	ENSMUSG00000022659	Gcsam	Gcet|Gcet2|M17|M17-L	germinal center associated, signaling and motility	protein-coding	1.96010234467078	2.77092088417666	2.34876841227324	1.06626494123112	1.4469221820528	2.2431222597545	1.35804228591484	1.31861358545104	-1.34323980337963	0.219241454513955	0.710517864987671
Merged-chr3-116211842-1	chr3	116211742	116211942	+	596.0	f0_balb.idr	Intergenic	MLT1J2|LTR|ERVL-MaLR	41642.0	NM_022427	64378.0	Mm.40025	NM_022427	ENSMUSG00000068696	Gpr88	AW061286|Strg	G-protein coupled receptor 88	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-34847941-3	chr12	34847839	34848039	+	709.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271386, intron 2 of 27)	intron (NM_001271386, intron 2 of 27)	69156.0	NM_001271386	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	0.599243567284536	0.597299780429867	0.257139397508485	0.756751672740254	0.701459767137109	0.264116770553665	0.258393122171022	0.409994267193128	-0.962778880971595	0.602141590902985	1
Merged-chr10-119040436-4	chr10	119040322	119040522	+	993.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152787, intron 3 of 3)	intron (NR_152787, intron 3 of 3)	10077.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	0.170268758316982	0.877756035563735	0.18747558205033	0.181055094125474	0.716691603361272	1.11352172798225	0.189300844083058	0.182180793433084	1.1973951916778	0.558746994031349	1
Merged-chr9-7835024-2	chr9	7834924	7835124	+	679.5	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001291503, exon 2 of 8)	5' UTR (NM_001291503, exon 2 of 8)	1782.0	NM_001291503	11797.0	Mm.335659	NM_007465	ENSMUSG00000057367	Birc2	AW146227|Api1|Api2|Birc3|C-IAP1|C330006D17Rik|HIAP1|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF48|cIAP1|cIAP2|mcIAP1	baculoviral IAP repeat-containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-29289034-2	chr12	29288924	29289124	+	732.0	f0_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	147095.0	NR_154987	102633526.0	Mm.134217	NR_154987		Gm31333	-	predicted gene, 31333	ncRNA	1.43098079239421	1.21919882141772	1.17587559023984	1.5217501479225	0.938254820799179	0.801850928831152	1.95776152869575	0.77441373298984	-0.339613605144293	0.804180769264198	0.998431161219273
Merged-chr13-6461586-4	chr13	6461481	6461681	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-86576.0	NM_145131	69617.0	Mm.41933	NM_145131	ENSMUSG00000021193	Pitrm1	2310012C15Rik|AA410010|MP-1|MP1|Ntup1|PreP|mKIAA1104	pitrilysin metallepetidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-40644900-2	chr10	40644800	40645000	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_133568, intron 3 of 4)	intron (NR_133568, intron 3 of 4)	14889.0	NR_133568	70503.0	Mm.252862	NM_027442	ENSMUSG00000063428	Ddo	5330420D20Rik|5730402C02Rik|AI467244	D-aspartate oxidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-44754753-2	chr4	44754653	44754853	+	590.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1806.0	NM_138590	319885.0	Mm.331576	NM_138590	ENSMUSG00000035649	Zcchc7	4930572I07Rik|D4Wsu132e	zinc finger, CCHC domain containing 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10849087-1	chr19	10848987	10849187	+	649.0	f0_balb.idr	intron (NM_023044, intron 2 of 7)	B4|SINE|B4	6543.0	NM_023044	65221.0	Mm.27387	NM_023044	ENSMUSG00000024737	Slc15a3	Ci1|cI-1	solute carrier family 15, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-8536625-2	chr4	8536525	8536725	+	886.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021518, intron 1 of 7)	intron (NM_021518, intron 1 of 7)	981.0	NM_021518	59021.0	Mm.397471	NM_021518	ENSMUSG00000047187	Rab2a	9330148M11Rik|C80220|Rab2	RAB2A, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-92737768-2	chr7	92737668	92737868	+	562.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3691.0	NR_015510	666737.0	Mm.473620	NR_015510	ENSMUSG00000074024	4632427E13Rik	AU015482	RIKEN cDNA 4632427E13 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-163590336-1	chr2	163590236	163590436	+	640.0	f0_balb.idr	Intergenic	Intergenic	-11978.0	NM_181734	76080.0	Mm.89828	NM_029512	ENSMUSG00000017679	Ttpal	3110080A02Rik|5830472M02Rik	tocopherol (alpha) transfer protein-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-72997212-2	chr2	72997112	72997312	+	705.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16766.0	NM_001018042	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-45623631-2	chr11	45623537	45623737	+	852.0	f0_balb.idr|f1_balb.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-184446.0	NR_045876	100009664.0	Mm.415439	NR_045876		F630206G17Rik	-	RIKEN cDNA F630206G17 gene	ncRNA	1.33307917457512	0.825613964874177	0.800088938221659	0.779558200340566	2.52158855733494	2.39473460174782	0.805819670065192	1.8380596735023	3.58630734403637	0.0117526219545768	0.121838673569423
Merged-chr4-87871603-1	chr4	87871503	87871703	+	612.0	f1_c57bl6.idr	intron (NM_027326, intron 4 of 10)	L1_Mus4|LINE|L1	-65280.0	NM_029931	70122.0	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-57274821-2	chr17	57274721	57274921	+	671.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-4279.0	NM_001163816	22324.0	Mm.248172	NM_011691	ENSMUSG00000034116	Vav1	Vav|vav-T	vav 1 oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-178407465-2	chr1	178407365	178407565	+	708.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026626, intron 1 of 6)	B1_Mus2|SINE|Alu	1447.0	NM_026626	68226.0	Mm.252132	NM_026626	ENSMUSG00000026495	Efcab2	1700073K01Rik|D830011E08Rik	EF-hand calcium binding domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-8992362-4	chr15	8992260	8992460	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198024, intron 1 of 13)	MIRb|SINE|MIR	24411.0	NM_198024	223332.0	Mm.321371	NM_198024	ENSMUSG00000048424	Ranbp3l	C130037N17Rik	RAN binding protein 3-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-110601997-4	chr12	110601866	110602066	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030238, intron 1 of 76)	CpG	571.0	NM_030238	13424.0	Mm.181430	NM_030238	ENSMUSG00000018707	Dync1h1	9930018I23Rik|AI894280|DHC1|DHC1a|DNCL|Dnchc1|Dnec1|Dnecl|Loa|MAP1C|P22|Swl|mKIAA0325	dynein cytoplasmic 1 heavy chain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166694741-4	chr2	166694631	166694831	+	947.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	ORR1B1|LTR|ERVL-MaLR	19101.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-96633013-3	chr10	96632950	96633150	+	891.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16049.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-93507170-3	chr1	93507049	93507249	+	883.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159719, intron 12 of 12)	intron (NM_001159719, intron 12 of 12)	-4955.0	NM_145519	227377.0	Mm.243091	NM_145519	ENSMUSG00000034066	Farp2	AI465173|BC009153|D030026M03Rik|Fir|mKIAA0793	FERM, RhoGEF and pleckstrin domain protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-72691536-3	chr14	72691444	72691644	+	776.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207636, intron 1 of 25)	MLT1A|LTR|ERVL-MaLR	18459.0	NM_207636	319448.0	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-69460140-2	chr15	69460040	69460240	+	741.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	189607.0	NR_130983	75076.0		NR_130983	ENSMUSG00000116167	4930504C09Rik	-	RIKEN cDNA 4930504C09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-36119470-4	chr12	36119336	36119536	+	837.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025840, intron 5 of 11)	intron (NM_025840, intron 5 of 11)	29057.0	NR_003649	432649.0	Mm.347860	NM_001014396	ENSMUSG00000059301	Gm5434	EG432649	ubiquitin-conjugating enzyme E2F (putative) pseudogene	pseudo	5.68236360619823	4.91914567388412	5.46924004686859	4.84623104522582	4.49748563659097	4.19743326668734	4.88747370545268	3.76429799295066	-1.06801156695857	0.00469908475922908	0.0638259837070534
Merged-chr17-78201996-2	chr17	78201896	78202096	+	597.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_015800, intron 1 of 16)	intron (NM_015800, intron 1 of 16)	1748.0	NM_015800	50766.0	Mm.311912	NM_015800	ENSMUSG00000024074	Crim1	AU015004	cysteine rich transmembrane BMP regulator 1 (chordin like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-91769621-4	chr12	91769534	91769734	+	901.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 1 of 6)	intron (NM_175367, intron 1 of 6)	16802.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-128725934-2	chr7	128725834	128726034	+	575.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145955, intron 1 of 15)	intron (NM_145955, intron 1 of 15)	14495.0	NM_145955	210711.0	Mm.58882	NM_145955	ENSMUSG00000048170	Mcmbp	1110007A13Rik|AU017382|BC025641|MCM-BP	minichromosome maintenance complex binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-86510505-2	chr1	86510405	86510605	+	570.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16052.0	NR_153834	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-80879881-4	chr8	80879781	80879981	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001301298, exon 1 of 11)	5' UTR (NM_001301298, exon 1 of 11)	598.0	NM_021356	14388.0	Mm.277409	NM_021356	ENSMUSG00000031714	Gab1	AA408973|AW107238	growth factor receptor bound protein 2-associated protein 1	protein-coding	3.99085375213845	3.45818169600468	3.03993356323035	3.41452011959686	3.10907606112391	3.73179063595819	2.80885026045894	3.35206506293994	-0.378771795316364	0.511473566912155	0.94512318675548
Merged-chr7-30698310-3	chr7	30698204	30698404	+	949.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026961)	promoter-TSS (NM_026961)	-622.0	NM_026961	69147.0	Mm.307035	NM_026961	ENSMUSG00000013083	2200002J24Rik	-	RIKEN cDNA 2200002J24 gene	protein-coding	2.29438848621485	1.36675440472998	2.98463971575169	2.76317327254495	1.83878388405852	1.87210116026906	2.14611059131375	2.43360815385986	-0.894709546754769	0.332550006385166	0.833345452772687
Merged-chr1-75209265-7	chr1	75209170	75209370	+	937.392883	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029010, intron 2 of 16)	intron (NM_029010, intron 2 of 16)	1508.0	NM_029010	74577.0	Mm.458319	NM_029010	ENSMUSG00000026200	Glb1l	4833408P15Rik	galactosidase, beta 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27501825-3	chr17	27501724	27501924	+	944.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013385, intron 1 of 8)	intron (NM_001013385, intron 1 of 8)	1709.0	NM_001013385	268934.0	Mm.358940	NM_001013385	ENSMUSG00000063239	Grm4	Gprc1d|mGluR4	glutamate receptor, metabotropic 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-122810336-4	chr6	122810231	122810431	+	912.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-9853.0	NM_021899	60611.0	Mm.87142	NM_021899	ENSMUSG00000003154	Foxj2	Fhx	forkhead box J2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-46789980-1	chr7	46789880	46790080	+	544.0	f1_balb.idr	intron (NM_001005247, intron 2 of 22)	intron (NM_001005247, intron 2 of 22)	5901.0	NM_001005248	246694.0	Mm.379442	NM_178742	ENSMUSG00000014418	Hps5	AI646796|AL022647|C85120|haze|hz|maroon|mr|ru-2|ru2	HPS5, biogenesis of lysosomal organelles complex 2 subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16098506-4	chr7	16098383	16098583	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025898)	promoter-TSS (NM_025898)	-97.0	NM_025898	108124.0	Mm.104540	NM_025898	ENSMUSG00000006024	Napa	1500039N14Rik|AW209189|RA81|SNAP-alpha|SNAPA|SNARE|a-SNAP|hyh	N-ethylmaleimide sensitive fusion protein attachment protein alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122642233-2	chr5	122642133	122642333	+	552.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	-1678.0	NM_001038839	18439.0	Mm.42026	NM_011027	ENSMUSG00000029468	P2rx7	AI467586|P2X(7)|P2X7R	purinergic receptor P2X, ligand-gated ion channel, 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-4361834-2	chr3	4361734	4361934	+	709.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-436874.0	NR_045272	100503859.0	Mm.75172	NR_045272	ENSMUSG00000098659	1110015O18Rik	-	RIKEN cDNA 1110015O18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-39217413-3	chr15	39217338	39217538	+	861.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001256383, intron 1 of 25)	LTR41B|LTR|ERVL	19152.0	NM_053271	116838.0	Mm.309296	NM_053271	ENSMUSG00000037386	Rims2	2810036I15Rik|AW048769|RIM2|Rab3ip2|Rim2(+40A)|Rim2(+44A)|Rim2(+4A)|Serg2|Syt3-rs|mKIAA0751	regulating synaptic membrane exocytosis 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81312578-2	chr10	81312478	81312678	+	845.875	f1_balb.idr|f1_c57bl6.idr	exon (NM_008844, exon 11 of 18)	exon (NM_008844, exon 11 of 18)	-8525.0	NM_027381	70312.0	Mm.87628	NM_027381	ENSMUSG00000034889	Cactin	2510012J08Rik	cactin, spliceosome C complex subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-98856759-2	chr15	98856659	98856859	+	632.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001033276, exon 20 of 55)	exon (NM_001033276, exon 20 of 55)	14446.0	NM_001033276	381022.0	Mm.264889	NM_001033276	ENSMUSG00000048154	Kmt2d	ALR|BC032281|BC058659|C430014K11Rik|KMT2B|Mll2|Mll4	lysine (K)-specific methyltransferase 2D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-151344429-4	chr1	151344310	151344510	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359262)	promoter-TSS (NM_001359262)	-76.0	NM_001359262	117198.0	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31419431-3	chr14	31419319	31419519	+	885.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011894, intron 2 of 8)	intron (NM_011894, intron 2 of 8)	-1742.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-144003472-4	chr1	144003329	144003529	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009061, intron 1 of 4)	intron (NM_009061, intron 1 of 4)	720.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-5333137-1	chr5	5333037	5333237	+	596.0	f0_balb.idr	intron (NM_011074, intron 2 of 14)	intron (NM_011074, intron 2 of 14)	47114.0	NM_011074	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	1.16278535506173	1.57754891778903	0.747057907241393	1.23204869555091	1.47942510547309	1.59172612772152	0.749978656404132	0.738562567679958	-0.015726562221419	0.991437865271641	0.998431161219273
Merged-chr2-128819180-4	chr2	128819055	128819255	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355629, intron 1 of 18)	intron (NM_001355629, intron 1 of 18)	852.0	NM_001355629	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-105517089-1	chr5	105516989	105517189	+	541.0	f1_balb.idr	Intergenic	Intergenic	-2382.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-134693356-4	chr7	134693246	134693446	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033420, intron 1 of 51)	MTD|LTR|ERVL-MaLR	22659.0	NM_001033420	330662.0	Mm.436572	NM_001033420	ENSMUSG00000058325	Dock1	9130006G06Rik|AI854900|D630004B07Rik|b2b3190Clo	dedicator of cytokinesis 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-51856483-9	chr11	51856434	51856634	+	989.858032	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357588, intron 1 of 12)	CpG	947.0	NM_199299	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-88443265-2	chr17	88443165	88443365	+	624.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355742, intron 1 of 5)	B1_Mus1|SINE|Alu	2561.0	NM_001355742	14236.0	Mm.112824	NM_180974	ENSMUSG00000034998	Foxn2	3230402J05Rik|6030465J18Rik|Fkh19|Foxn1|HTLF	forkhead box N2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99139416-3	chr7	99139318	99139518	+	858.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 1 of 14)	intron (NM_178635, intron 1 of 14)	1726.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	0.163371399853445	0.521660965740376	0.174868531559536	0.684118667565388	0.532833767079576	0.181759093190516	0.1761072823269	0.690905066564313	0.0633504869086482	0.974846692021654	1
Merged-chr2-22724330-4	chr2	22724234	22724434	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-49993.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-84579034-2	chr6	84578934	84579134	+	595.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177713, intron 3 of 6)	intron (NM_001177713, intron 3 of 6)	14776.0	NM_175475	232174.0	Mm.255246	NM_175475	ENSMUSG00000063415	Cyp26b1	CP26|P450RAI-2	cytochrome P450, family 26, subfamily b, polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-9486131-4	chr18	9486061	9486261	+	982.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36007.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	1.69374181227441	2.13212768254742	1.01726286562532	1.89546953313047	1.70858013941654	1.04135154895347	1.97183254864955	1.22014926387944	-0.62162488487683	0.607261664643005	0.974576632476413
Merged-chr10-25297879-2	chr10	25297794	25297994	+	973.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_018747, intron 1 of 7)	intron (NM_018747, intron 1 of 7)	1269.0	NM_018747	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-53244021-6	chr18	53244030	53244230	+	884.690735	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1532.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-36529055-3	chr13	36528955	36529155	+	772.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039189, intron 5 of 5)	ORR1F|LTR|ERVL-MaLR	205422.0	NM_153529	68404.0	Mm.232930	NM_153529	ENSMUSG00000039114	Nrn1	0710008J23Rik|Cpg15|Nrn	neuritin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70539468-4	chr8	70539361	70539561	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007924)	promoter-TSS (NM_007924)	-214.0	NM_007924	13716.0	Mm.271973	NM_007924	ENSMUSG00000070002	Ell	Ell1|Men	elongation factor RNA polymerase II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-72182944-4	chr5	72182834	72183034	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14745.0	NM_001356614	27784.0	Mm.44223	NM_178599	ENSMUSG00000029213	Commd8	C77770|D5Buc26e	COMM domain containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-146480753-2	chr4	146480653	146480853	+	880.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21247.0	NM_001243138	100041433.0	Mm.441741	NM_001243138	ENSMUSG00000056300	Zfp981	Gm13247	zinc finger protein 981	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-11843661-4	chr16	11843547	11843747	+	968.80835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146067, intron 2 of 3)	intron (NM_146067, intron 2 of 3)	-57717.0	NR_033509	791359.0	Mm.227592	NR_033509	ENSMUSG00000055015	Gm9961	-	predicted gene 9961	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-80080491-2	chr11	80080391	80080591	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_018776, intron 1 of 7)	intron (NM_018776, intron 1 of 7)	500.0	NM_001277106	54394.0	Mm.272093	NM_018776	ENSMUSG00000017561	Crlf3	BB164954|Creme9|Cytor4	cytokine receptor-like factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-19008027-4	chr10	19007943	19008143	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166402, intron 2 of 7)	intron (NM_001166402, intron 2 of 7)	3920.0	NM_001166402	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-7727293-3	chr10	7727207	7727407	+	870.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011835, intron 1 of 10)	PB1D10|SINE|Alu	1307.0	NM_011835	23924.0	Mm.28127	NM_011835	ENSMUSG00000019794	Katna1	-	katanin p60 (ATPase-containing) subunit A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-67061669-4	chr1	67061560	67061760	+	911.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22788.0	NM_021295	14768.0	Mm.20522	NM_021295	ENSMUSG00000026000	Lancl1	AW124738|Gpr69|Gpr69a|p40	LanC (bacterial lantibiotic synthetase component C)-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-90252909-2	chr11	90252809	90253009	+	913.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026178, intron 1 of 6)	intron (NM_026178, intron 1 of 6)	3433.0	NM_026178	67468.0	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-117466139-4	chr12	117466036	117466236	+	891.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50343.0	NM_175930	217944.0	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-79139291-2	chr12	79139191	79139391	+	566.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009705, intron 2 of 7)	intron (NM_009705, intron 2 of 7)	8503.0	NM_009705	11847.0	Mm.3506	NM_009705	ENSMUSG00000021125	Arg2	AII|AU022422	arginase type II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128376450-2	chr10	128376350	128376550	+	915.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172790)	promoter-TSS (NM_172790)	-674.0	NM_172790	237615.0	Mm.440177	NM_172790	ENSMUSG00000014498	Ankrd52	6430544C07|G431002C21Rik	ankyrin repeat domain 52	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-116184594-4	chr3	116184505	116184705	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54917.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35003445-2	chr17	35003345	35003545	+	598.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011690, intron 2 of 29)	B1_Mur1|SINE|Alu	2538.0	NM_011690	22321.0	Mm.28420	NM_011690	ENSMUSG00000007029	Vars	Bat6|D17H6S56E|G7a|Vars2	valyl-tRNA synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-36864254-4	chr14	36864137	36864337	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55298.0	NM_001347503	72972.0	Mm.27621	NM_027045	ENSMUSG00000058690	Ccser2	1700012P13Rik|2900054P12Rik|AI035535|AW108503|Fam190b|Gcap14	coiled-coil serine rich 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30878153-4	chr7	30878071	30878271	+	987.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001043317, intron 3 of 15)	PB1D7|SINE|Alu	857.0	NM_009845	12483.0	Mm.260994	NM_009845	ENSMUSG00000030577	Cd22	A530093D23|Lyb-8|Lyb8	CD22 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-115089429-1	chr13	115089329	115089529	+	629.0	f0_balb.idr	exon (NM_134058, exon 1 of 2)	exon (NM_134058, exon 1 of 2)	729.0	NM_134058	105083.0	Mm.486295	NM_134058	ENSMUSG00000042275	Pelo	AA409897|AI852218	pelota mRNA surveillance and ribosome rescue factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-73618601-2	chr15	73618501	73618701	+	850.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033219, intron 1 of 7)	intron (NM_001033219, intron 1 of 7)	-1277.0	NM_001357747	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-29364268-4	chr19	29364166	29364366	+	807.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2395.0	NM_026362	67759.0	Mm.275511	NM_026362	ENSMUSG00000016495	Plgrkt	1110007H22Rik|5033414D02Rik|AI852040|Plg-R(KT)|Plg-RKT	plasminogen receptor, C-terminal lysine transmembrane protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76294807-4	chr15	76294687	76294887	+	908.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001195537, exon 1 of 7)	exon (NM_001195537, exon 1 of 7)	353.0	NM_001195537	100503915.0	Mm.393455	NM_001195537	ENSMUSG00000071724	Smpd5	Gm10345|MA-nSMase	sphingomyelin phosphodiesterase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-95633475-4	chr8	95633384	95633584	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030198)	promoter-TSS (NM_030198)	-75.0	NM_030198	78833.0	Mm.35546	NM_030198	ENSMUSG00000031669	Gins3	2700085M18Rik|AI616142	GINS complex subunit 3 (Psf3 homolog)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-57523902-4	chr9	57523762	57523962	+	996.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007747, intron 1 of 4)	intron (NM_007747, intron 1 of 4)	2630.0	NM_007747	12858.0	Mm.273403	NM_007747	ENSMUSG00000000088	Cox5a	AA959768|CcOX	cytochrome c oxidase subunit Va	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44468156-2	chr9	44468056	44468256	+	743.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13389.0	NM_009476	22269.0	Mm.4453	NM_009476	ENSMUSG00000041523	Upk2	AW491716|UPII	uroplakin 2	protein-coding	1.94181785561995	2.18355207642487	1.58329449309652	1.69470431887533	1.9579984360651	2.20019641947874	1.75403897005915	1.15807979876414	-0.128306675880953	0.902741125100453	0.998431161219273
Merged-chr1-85604362-1	chr1	85604262	85604462	+	860.0	f1_balb.idr	promoter-TSS (NM_175397)	promoter-TSS (NM_175397)	-471.0	NM_175397	109032.0	Mm.335802	NM_030194	ENSMUSG00000070034	Sp110	5031415C07Rik|52kDa|5830484A20Rik|Ifi75|Ipr1	Sp110 nuclear body protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-109267164-4	chr3	109267074	109267274	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73509.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	4.73694232684608	4.70300863691067	3.75525619303487	4.57621314923513	4.63248967513987	5.33579567938301	4.18018614376267	5.25363292321232	0.525589686549651	0.192220498049812	0.670655636962211
Merged-chr4-59783068-2	chr4	59782968	59783168	+	942.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013577, intron 1 of 4)	B4A|SINE|B4	787.0	NM_001013577	66209.0	Mm.51988	NM_001013577	ENSMUSG00000038544	Inip	1110054O05Rik|2610312O17Rik|AA399876|Ssbip1	INTS3 and NABP interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153144159-2	chr2	153144059	153144259	+	886.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001172117, intron 10 of 12)	intron (NM_001172117, intron 10 of 12)	-17142.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-8101252-2	chr14	8101152	8101352	+	609.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360314, intron 1 of 19)	MT2C_Mm|LTR|ERVL	3041.0	NM_001360315	218699.0	Mm.29515	NM_145458	ENSMUSG00000033885	Pxk	C230080L11Rik|D14Ertd813e|Monaka|Slob	PX domain containing serine/threonine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4_GL456216_random-16498-1	chr4_GL456216_random	16398	16598	+	1000.0	f0_c57.idr	intron (NM_001033326, intron 1 of 6)	CpG	617.0	NM_001033326	236082.0	Mm.305345	NM_001033326	ENSMUSG00000063897	Dhrsx	C80877|D4Ertd296e|Dhrsxy|Pscad	dehydrogenase/reductase (SDR family) X chromosome	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-25860663-3	chr17	25860557	25860757	+	854.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001163766, exon 3 of 41)	exon (NM_001163766, exon 3 of 41)	858.0	NM_001163766	106618.0	Mm.35470	NM_134124	ENSMUSG00000073434	Wdr90	3230401M21Rik|AI551153|mKIAA1924	WD repeat domain 90	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167799163-2	chr2	167799063	167799263	+	988.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	107986.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-115362203-3	chr6	115362097	115362297	+	866.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001308354)	promoter-TSS (NM_001308354)	-152.0	NM_001308354	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-82890606-4	chr11	82890447	82890647	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_102717)	promoter-TSS (NR_102717)	77.0	NR_102719	19364.0	Mm.9286	NM_011235	ENSMUSG00000018841	Rad51d	R51H3|Rad51l3|TRAD|Trad-d5	RAD51 paralog D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106157269-2	chr11	106157169	106157369	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001356459, exon 5 of 5)	3' UTR (NM_001356459, exon 5 of 5)	2658.0	NM_001356459	67803.0	Mm.21687	NM_172397	ENSMUSG00000040699	Limd2	0610025L06Rik|AI413966	LIM domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-15813910-4	chr17	15813822	15814022	+	796.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178615, intron 2 of 2)	intron (NM_178615, intron 2 of 2)	12664.0	NM_178615	68799.0	Mm.293466	NM_178615	ENSMUSG00000048027	Rgmb	1110059F19Rik|DRAGON	repulsive guidance molecule family member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-31195988-4	chr5	31195877	31196077	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_153680, exon 6 of 15)	exon (NM_153680, exon 6 of 15)	2673.0	NM_153680	266781.0	Mm.6118	NM_153680	ENSMUSG00000029146	Snx17	5830447M19Rik|AI790646|D5Ertd260e|b2b1625.1Clo|mKIAA0064	sorting nexin 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-29378972-2	chr17	29378874	29379074	+	699.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_013710, exon 16 of 16)	exon (NM_013710, exon 16 of 16)	18060.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	0.0518665061384253	0.551136129680383	0.0629570574765248	0.0587839866745256	0.196005268351031	0.560543443682159	0.0641508810579067	0.587966884604371	1.28792912862539	0.537697954817722	1
Merged-chr13-12395844-3	chr13	12395724	12395924	+	936.7333369999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_144835, exon 2 of 45)	exon (NM_144835, exon 2 of 45)	449.0	NM_144835	217995.0	Mm.171186	NM_144835	ENSMUSG00000050244	Heatr1	AA517551|B130016L12Rik|BC019693	HEAT repeat containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-99349860-3	chr12	99349769	99349969	+	886.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183186, intron 2 of 5)	intron (NM_183186, intron 2 of 5)	100205.0	NM_183186	71375.0	Mm.341972	NM_183186	ENSMUSG00000033713	Foxn3	5430426H20Rik|AA589593|AW556347|Ches1|Ches1l|HTLFL1	forkhead box N3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99033320-2	chr15	99033220	99033420	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009448, intron 1 of 3)	intron (NM_009448, intron 1 of 3)	3429.0	NM_009448	22146.0	Mm.88212	NM_009448	ENSMUSG00000043091	Tuba1c	M[a]6|Tuba6	tubulin, alpha 1C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-97174825-3	chr15	97174689	97174889	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7545.0	NR_155279	102635594.0	Mm.392594	NR_155278	ENSMUSG00000116295	Gm32885	-	predicted gene, 32885	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-133545993-1	chr3	133545893	133546093	+	553.0	f0_balb.idr	Intergenic	Intergenic	-1603.0	NM_001346736	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-123812362-2	chr9	123812262	123812462	+	672.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_030712)	TTS (NM_030712)	5885.0	NM_030712	80901.0	Mm.124289	NM_030712	ENSMUSG00000048521	Cxcr6	BB217514|BONZO|STRL33	chemokine (C-X-C motif) receptor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-17902585-4	chr14	17902498	17902698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113417, intron 2 of 9)	MIR3|SINE|MIR	-79046.0	NM_009380	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-27029445-3	chr9	27029355	27029555	+	690.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178113)	promoter-TSS (NM_178113)	639.0	NM_178027	69091.0	Mm.218717	NM_178027	ENSMUSG00000031988	Vps26b	1810012I05Rik|2310075A12Rik|AI848392	VPS26 retromer complex component B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70001350-4	chr8	70001234	70001434	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4950.0	NM_145596	234366.0	Mm.270044	NM_145596	ENSMUSG00000036180	Gatad2a	1110066C11Rik|BC031407|C80248	GATA zinc finger domain containing 2A	protein-coding	5.51482455771049	5.4583675748504	5.50677929484247	4.84710616947467	5.74309259582745	4.55879501096356	5.76997380432521	5.22404304782074	0.0642919199934993	0.844955288096536	0.998431161219273
Merged-chr15-64827979-1	chr15	64827879	64828079	+	590.0	f1_c57bl6.idr	intron (NM_009623, intron 2 of 17)	ORR1A3|LTR|ERVL-MaLR	94317.0	NM_001331075	11514.0	Mm.1425	NM_009623	ENSMUSG00000022376	Adcy8	AC8|AW060868	adenylate cyclase 8	protein-coding	0.573465440853792	0.380782260212019	0.0131501696795998	0.00867865428849041	0.00234610608781427	0.0202370765946851	0.0144270498402519	0.747832266545611	-0.123995374634781	0.955704947365309	1
Merged-chr7-30232854-4	chr7	30232749	30232949	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360649)	promoter-TSS (NM_001360649)	-652.0	NM_025548	66411.0	Mm.27947	NM_025548	ENSMUSG00000006095	Tbcb	2410007D12Rik|AU041393|CG22|CKAPI|Ckap1	tubulin folding cofactor B	protein-coding	2.94366250363019	2.66395734668967	3.3352800339086	2.73614612613903	1.73409308007173	2.93478618871241	3.12811728213215	3.0338494678285	-0.248201518833595	0.733621684818977	0.998431161219273
Merged-chr8-46951934-5	chr8	46951862	46952062	+	784.200012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34925.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-108697219-2	chr4	108697119	108697319	+	707.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_183300, intron 1 of 15)	intron (NM_183300, intron 1 of 15)	26693.0	NM_183300	230597.0	Mm.196776	NM_183300	ENSMUSG00000034557	Zfyve9	Madhip|NSP|SARA|SMADIP	zinc finger, FYVE domain containing 9	protein-coding	1.30736049091224	1.02600584815647	1.43050640070424	0.787011731125835	1.80029800356162	1.03244379841792	1.00353980521222	1.27352291100834	0.660656997729681	0.618827838165564	0.978231579824862
Merged-chr15-80171670-2	chr15	80171570	80171770	+	622.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2051.0	NM_010795	17309.0	Mm.299693	NM_010795	ENSMUSG00000042428	Mgat3	1110038J12Rik|AI848272|GnT-III	mannoside acetylglucosaminyltransferase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81428287-2	chr10	81428187	81428387	+	791.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1114.0	NM_026756	18029.0	Mm.426936	NM_008688	ENSMUSG00000055053	Nfic	1110019L22Rik|1500041O16Rik|AA589446|AI746521|NF1-C	nuclear factor I/C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-8912879-4	chr4	8912778	8912978	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	161554.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-55841496-3	chr13	55841401	55841601	+	854.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-10076.0	NM_011097	18740.0	Mm.135195	NM_011097	ENSMUSG00000021506	Pitx1	Bft|P-OTX|Potx|Ptx1	paired-like homeodomain transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-120577726-4	chr9	120577622	120577822	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_073359, exon 1 of 1)	non-coding (NR_073359, exon 1 of 1)	391.0	NR_073359	76100.0	Mm.48212	NR_073359	ENSMUSG00000052658	5830454E08Rik	-	RIKEN cDNA 5830454E08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-58657553-4	chr3	58657459	58657659	+	971.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	5517.0	NR_004433	666680.0	Mm.422212	NR_004433		Gm8234	AU022133	spermine synthase pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-36839225-4	chr17	36839137	36839337	+	934.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025599, intron 2 of 9)	Lx4A|LINE|L1	2091.0	NM_001286726	22670.0	Mm.34587	NM_030698	ENSMUSG00000024457	Trim26	AI462198|Zfp173|Zfp1736	tripartite motif-containing 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-30229146-4	chr6	30229048	30229248	+	991.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001169576, intron 3 of 4)	intron (NM_001169576, intron 3 of 4)	14655.0	NM_001169577	22214.0	Mm.332967	NM_009459	ENSMUSG00000039159	Ube2h	1500009C23Rik|AI181839|AI326965|AI462483|AW227540|E2-20K|Gid3|N28148|Ubc8	ubiquitin-conjugating enzyme E2H	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-29634420-3	chr13	29634319	29634519	+	773.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131896, intron 8 of 16)	L1MB3|LINE|L1	221254.0	NR_131896	68916.0	Mm.212227	NM_144536	ENSMUSG00000006191	Cdkal1	1190005B03Rik|6620401C13Rik	CDK5 regulatory subunit associated protein 1-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46467251-4	chr19	46467113	46467313	+	837.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025391, intron 8 of 11)	intron (NM_001025391, intron 8 of 11)	-34435.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-24380805-1	chr13	24380705	24380905	+	580.0	f0_c57.idr	intron (NM_001284519, intron 2 of 17)	intron (NM_001284519, intron 2 of 17)	-34317.0	NM_007717	12763.0	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-172356828-1	chr1	172356728	172356928	+	575.0	f1_c57bl6.idr	intron (NM_001039484, intron 1 of 1)	intron (NM_001039484, intron 1 of 1)	15618.0	NM_001039484	16513.0	Mm.254563	NM_020269	ENSMUSG00000044708	Kcnj10	BIR10|BIRK-1|Kir1.2|Kir4.1	potassium inwardly-rectifying channel, subfamily J, member 10	protein-coding	0.916261387494963	1.34328489190679	0.978516358708026	1.66485977593029	0.922169197210047	1.6086496329204	1.30403624626048	0.767040203488716	-0.275869539869026	0.837582189069513	0.998431161219273
Merged-chr18-23816251-2	chr18	23816151	23816351	+	616.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153058, intron 1 of 6)	intron (NM_153058, intron 1 of 6)	12281.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-61226021-6	chr19	61225957	61226157	+	841.2222289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009970, intron 6 of 11)	CpG-7695	2361.0	NM_009970	12982.0	Mm.287228	NM_009970	ENSMUSG00000059326	Csf2ra	CD116|Csfgmra|GM-CSF-Ra|GM-CSFR	colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)	protein-coding	0.659481160135079	-0.0130722447212579	0.151743541973009	0.269773833661032	0.339965719214456	-0.0119666038954313	-0.016890399300967	-0.0210812332210064	-1.72940728504504	0.423253893915949	1
Merged-chr17-81579930-4	chr17	81579842	81580042	+	962.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 2 of 8)	intron (NR_104580, intron 2 of 8)	158445.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-74364736-2	chr1	74364636	74364836	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033345, intron 6 of 9)	intron (NM_001033345, intron 6 of 9)	2628.0	NM_001033345	241112.0	Mm.310460	NM_001033345	ENSMUSG00000073650	Catip	Gm216	ciliogenesis associated TTC17 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34398298-4	chr17	34398158	34398358	+	958.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001001177)	promoter-TSS (NM_001001177)	-562.0	NM_001001177	407788.0	Mm.73205	NM_001001177	ENSMUSG00000057246	BC051142	NG8|TSBP|Tesb|Tesbp	cDNA sequence BC051142	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43741681-3	chr4	43741593	43741793	+	933.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10166.0	NR_040667	319973.0	Mm.233955	NR_040667		A630077J23Rik	-	RIKEN cDNA A630077J23 gene	ncRNA	-0.489915844975785	-0.480296427139537	-0.321764394922755	-0.208008181556128	-0.0481111723289224	-0.479577747877066	-0.482772739193763	-0.333732733544475	0.549910140594666	0.824266477719231	1
Merged-chr2-103058428-3	chr2	103058324	103058524	+	788.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175094, intron 2 of 10)	intron (NM_175094, intron 2 of 10)	15089.0	NM_175094	27402.0	Mm.315011	NM_175094	ENSMUSG00000010914	Pdhx	AI481367|E3bp|Pdx1	pyruvate dehydrogenase complex, component X	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-77753912-2	chr17	77753812	77754012	+	755.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT2B4|LTR|ERVL	-446336.0	NM_015800	50766.0	Mm.311912	NM_015800	ENSMUSG00000024074	Crim1	AU015004	cysteine rich transmembrane BMP regulator 1 (chordin like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-54755600-1	chr14	54755500	54755700	+	583.0	f1_c57bl6.idr	intron (NM_016972, intron 3 of 10)	B1_Mus2|SINE|Alu	26286.0	NM_016972	50934.0	Mm.276831	NM_016972	ENSMUSG00000022180	Slc7a8	AA408822|LAT2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	protein-coding	2.71594897759372	2.87597852260394	1.89038146703936	2.93244483816849	2.6643372536421	1.96651873973472	1.69105760389157	2.30383950910332	-0.959482446075438	0.255589743513543	0.754073543280857
Merged-chr2-79180948-4	chr2	79180826	79181026	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74500.0	NM_010576	16401.0	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-64249962-2	chr7	64249862	64250062	+	971.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_105844)	TTS (NR_105844)	137.0	NR_105844	102465226.0		NR_105844	ENSMUSG00000098910	Mir6416	Gm27746|mmu-mir-6416	microRNA 6416	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-79548461-3	chr14	79548365	79548565	+	950.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007920, intron 2 of 8)	Lx5|LINE|L1	32791.0	NM_001286411	13709.0	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-85349355-2	chr5	85349255	85349455	+	573.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	716228.0	NM_001345902	12617.0	Mm.4649	NM_007683	ENSMUSG00000029253	Cenpc1	CENP-C|Cenpc	centromere protein C1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-60726396-2	chr11	60726296	60726496	+	586.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_022009, intron 1 of 29)	intron (NM_022009, intron 1 of 29)	867.0	NM_022009	14248.0	Mm.339755	NM_022009	ENSMUSG00000002812	Flii	3632430F08Rik|Fliih	flightless I actin binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-112012859-3	chr13	112012764	112012964	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	144928.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	2.55696680152746	2.19929316368067	2.28652424473889	1.39027280689694	3.1018331422585	3.53210645061183	2.90100603160408	2.23070841199697	1.66410127209586	0.0414936075279129	0.291262846135237
Merged-chr13-60747538-2	chr13	60747442	60747642	+	609.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 19 of 26)	intron (NM_134062, intron 19 of 26)	38822.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	-1.05077857807962	-1.0302921931706	-0.45862181763937	-1.04714865345521	-1.05023864578296	-0.839907608352652	-1.03952567070525	-1.04676663266667	-1.77210817969728	0.57390095143856	1
Merged-chr10-128706237-1	chr10	128706137	128706337	+	542.0	f1_c57bl6.idr	promoter-TSS (NM_021882)	promoter-TSS (NM_021882)	-21.0	NM_021882	20431.0	Mm.16756	NM_021882	ENSMUSG00000025359	Pmel	D10H12S53E|D12S53Eh|Pmel17|Si|Silv|gp100|gp87	premelanosome protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24174720-2	chr17	24174620	24174820	+	726.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_173186)	TTS (NM_173186)	-5042.0	NM_001361531	11984.0	Mm.30155	NM_009729	ENSMUSG00000024121	Atp6v0c	Atp6c|Atp6c2|Atp6l|Atpl|Atpl-rs1|PL16|VATL|Vma3	ATPase, H+ transporting, lysosomal V0 subunit C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-10193114-2	chr5	10193014	10193214	+	753.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	-467762.0	NM_181850	108069.0	Mm.318966	NM_181850	ENSMUSG00000003974	Grm3	0710001G23Rik|Gprc1c|mGlu3|mGluR3	glutamate receptor, metabotropic 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-26669021-4	chr14	26668921	26669121	+	971.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_106132)	TTS (NR_106132)	587.0	NR_106132	102465773.0		NR_106132	ENSMUSG00000098751	Mir7672	Gm27314|mmu-mir-7672	microRNA 7672	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75169776-2	chr11	75169676	75169876	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010430, exon 1 of 2)	5' UTR (NM_010430, exon 1 of 2)	479.0	NM_010430	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-122741013-4	chr10	122740915	122741115	+	979.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110218, intron 1 of 9)	MTC|LTR|ERVL-MaLR	61700.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	3.27099582375436	3.68476591318785	4.42015272949514	3.26911302859368	3.84343830131083	3.40941366149874	4.86494849602667	3.28699838291622	0.372684828361291	0.510387576966538	0.94512318675548
Merged-chr11-107468424-4	chr11	107468283	107468483	+	872.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 1 of 9)	intron (NR_153311, intron 1 of 9)	2337.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100703271-2	chr11	100703171	100703371	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030150, intron 3 of 12)	intron (NM_030150, intron 3 of 12)	1000.0	NM_030150	80861.0	Mm.271830	NM_030150	ENSMUSG00000017830	Dhx58	B430001I08Rik|D11Lgp2e|LPG2|Lgp2|RLR-3	DEXH (Asp-Glu-X-His) box polypeptide 58	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123155622-4	chr5	123155533	123155733	+	872.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040398, intron 7 of 16)	B3|SINE|B2	13440.0	NM_001040398	208043.0	Mm.250391	NM_177581	ENSMUSG00000038384	Setd1b	AA516740|BC035291|KMT2G|mKIAA1076	SET domain containing 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16841713-4	chr7	16841627	16841827	+	822.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_133789)	TTS (NM_133789)	-1175.0	NM_001252458	101540.0	Mm.1881	NM_178900	ENSMUSG00000041187	Prkd2	AI325941|PKD2	protein kinase D2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-13239779-3	chr16	13239675	13239875	+	888.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER20|DNA|hAT-Charlie	-16706.0	NM_001122667	239719.0	Mm.270643	NM_153588	ENSMUSG00000009569	Mkl2	Gt4-1|MRTF-B|Mrtfb|mKIAA1243	MKL/myocardin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-120149497-2	chr6	120149397	120149597	+	810.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016718, intron 1 of 3)	URR1A|DNA|hAT-Charlie	-44326.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-150595570-4	chr5	150595459	150595659	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1034.0	NM_133898	100637.0	Mm.279932	NM_133898	ENSMUSG00000041132	N4bp2l1	2410024N18Rik|AI428195|B230342M21Rik	NEDD4 binding protein 2-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-107603144-2	chr8	107603044	107603244	+	828.1999509999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	AT_rich|Low_complexity|Low_complexity	-14662.0	NM_010817	17463.0	Mm.18347	NM_010817	ENSMUSG00000039067	Psmd7	AW107203|Mov-34|Mov34	proteasome (prosome, macropain) 26S subunit, non-ATPase, 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91725261-2	chr16	91725156	91725356	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026994, intron 1 of 11)	intron (NM_026994, intron 1 of 11)	3546.0	NM_026994	66609.0	Mm.109823	NM_026994	ENSMUSG00000058240	Cryzl1	2210407J23Rik|2410006O11Rik|QOH-1	crystallin, zeta (quinone reductase)-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-37489001-7	chr9	37488876	37489076	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146222)	promoter-TSS (NM_146222)	-345.0	NM_146222	235184.0	Mm.127892	NM_146222	ENSMUSG00000042138	Msantd2	2810450G17Rik|9530092B10Rik	Myb/SANT-like DNA-binding domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-97355346-4	chr5	97355251	97355451	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	36979.0	NM_001033191	97243.0	Mm.11746	NM_001033191	ENSMUSG00000046000	Naa11	Ard1b|Ard2|C80008	N(alpha)-acetyltransferase 11, NatA catalytic subunit	protein-coding	4.35718675233801	3.63973867917457	3.91932465276954	2.67096837248552	3.57503626810873	4.00866324987185	4.85914832201053	4.38135900257637	0.681237845802304	0.197442414868921	0.679718702856214
Merged-chr16-97850062-2	chr16	97849962	97850162	+	556.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359077, intron 1 of 23)	intron (NM_001359077, intron 1 of 23)	1165.0	NM_144789	114604.0	Mm.328741	NM_144789	ENSMUSG00000014039	Prdm15	C21orf83|E130018M06Rik|ORF62|Zfp298	PR domain containing 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-34199630-4	chr13	34199557	34199757	+	887.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033167, intron 5 of 10)	intron (NM_001033167, intron 5 of 10)	36693.0	NM_001110515	69666.0	Mm.24788	NM_001101430	ENSMUSG00000071451	Psmg4	PAC-4|mPAC4	proteasome (prosome, macropain) assembly chaperone 4	protein-coding	5.55640293443437	5.50199702471159	5.03799824369269	5.35073132022168	3.51970648367494	3.5767741552423	3.65759979613785	4.15466329670158	-2.01885665021173	5.70236735157144e-08	5.48319523965302e-06
Merged-chr5-21413648-2	chr5	21413548	21413748	+	807.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029195, intron 1 of 18)	MIRb|SINE|MIR	11029.0	NM_029195	75172.0	Mm.426695	NM_029195	ENSMUSG00000064280	Ccdc146	4930528G09Rik|mKIAA1505	coiled-coil domain containing 146	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-130785590-2	chr4	130785490	130785690	+	955.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6947.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-25496632-4	chr2	25496516	25496716	+	864.18335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-2705.0	NM_029958	77701.0	Mm.99123	NM_029958	ENSMUSG00000026943	Lcn12	9230102M18Rik	lipocalin 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-26139221-2	chr2	26139121	26139321	+	872.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001256522, intron 1 of 1)	intron (NM_001256522, intron 1 of 1)	322.0	NM_001256522	109299.0	Mm.389259	NM_001256521		Tmem250-ps	AI551216|C330006A16Rik	transmembrane protein 250, pseudogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-88667976-4	chr8	88667871	88668071	+	739.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145857, intron 4 of 12)	intron (NM_145857, intron 4 of 12)	20624.0	NM_145857	257632.0	Mm.222633	NM_145857	ENSMUSG00000055994	Nod2	ACUG|BLAU|CD|Card15|F830032C23Rik|IBD1|Nlrc2	nucleotide-binding oligomerization domain containing 2	protein-coding	2.26244778308308	4.21284355809331	1.34301084911146	3.77865866428135	3.26557866500166	1.42278176545415	1.35792395382892	4.19221909603551	-0.380259591838744	0.852914034786627	0.998431161219273
Merged-chr2-34775510-2	chr2	34775410	34775610	+	839.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163434, intron 8 of 8)	intron (NM_001163434, intron 8 of 8)	3420.0	NM_022310	14828.0	Mm.330160	NM_022310	ENSMUSG00000026864	Hspa5	AL022860|AU019543|Bip|D2Wsu141e|D2Wsu17e|Grp78|Hsce70|SEZ-7|Sez7|baffled|mBiP	heat shock protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-62224142-4	chr11	62224059	62224259	+	999.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A0|LTR|ERVL-MaLR	-24825.0	NM_007413	11541.0	Mm.40740	NM_007413	ENSMUSG00000018500	Adora2b	A2BAR|A2BR|A2b|AA2BR|AI480866|AI605384	adenosine A2b receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117462471-2	chr8	117462371	117462571	+	568.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001163262)	TTS (NM_001163262)	3206.0	NR_106046	102465653.0		NR_106046	ENSMUSG00000098483	Mir7078	Gm27386|mmu-mir-7078	microRNA 7078	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-81996354-4	chr11	81996244	81996444	+	809.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27948.0	NM_001034013	11418.0	Mm.234998	NM_007384	ENSMUSG00000020704	Asic2	ACIC2|Accn1|BNC1|BNaC1|BNaC1a|Mdeg	acid-sensing (proton-gated) ion channel 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-112877154-2	chr12	112877054	112877254	+	593.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16238.0	NM_019925	56696.0	Mm.20455	NM_019925	ENSMUSG00000021298	Gpr132	G2a	G protein-coupled receptor 132	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89313013-2	chr3	89312913	89313113	+	569.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	9866.0	NM_010108	13638.0	Mm.331159	NM_010108	ENSMUSG00000028039	Efna3	AW494418|EFL-2|Ehk1-L|Epl3|LERK-3	ephrin A3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-37881119-1	chr18	37881019	37881219	+	1000.0	f1_c57bl6.idr	intron (NM_007858, intron 16 of 26)	intron (NM_007858, intron 16 of 26)	-26459.0	NR_105945	102465592.0		NR_105945	ENSMUSG00000098706	Mir6979	Gm27524|mmu-mir-6979	microRNA 6979	ncRNA	-0.944452312839821	-1.06980499840527	-1.08137418347786	-1.08830806243699	-1.09125475322374	-1.06729790773803	-0.492469820684107	-1.08794360978941	1.85122623007205	0.563032835033943	1
Merged-chr19-11766616-4	chr19	11766508	11766708	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3807.0	NM_025606	94063.0	Mm.203928	NM_025606	ENSMUSG00000024683	Mrpl16	2310039D06Rik	mitochondrial ribosomal protein L16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-63176604-4	chr10	63176502	63176702	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_182992, intron 2 of 19)	Charlie1a|DNA|hAT-Charlie	27350.0	NM_182992	68802.0	Mm.259767	NM_182992	ENSMUSG00000020067	Mypn	1110056A04Rik|9830112J03|AI853556|mKIAA4170	myopalladin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128545651-2	chr10	128545551	128545751	+	563.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_134003, intron 2 of 2)	intron (NM_134003, intron 2 of 2)	2093.0	NM_134003	103284.0	Mm.68289	NM_134003	ENSMUSG00000039810	Zc3h10	AI790326	zinc finger CCCH type containing 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-64943940-4	chr14	64943840	64944040	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177338, intron 1 of 9)	ID4_|SINE|ID	5917.0	NM_177338	219150.0	Mm.344074	NM_177338	ENSMUSG00000021972	Hmbox1	AI451877|AI604847|F830020C16Rik	homeobox containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-146761047-1	chr5	146760947	146761147	+	815.333313	f0_c57.idr	intron (NM_011669, intron 3 of 8)	intron (NM_011669, intron 3 of 8)	33909.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	1.98883348013367	1.94783202522211	2.26006406823401	2.09113106268867	2.28144651997598	1.34053451894113	2.277496318697	2.10151274018509	-0.0351168448182837	0.970469237264083	0.998431161219273
Merged-chr6-143100848-2	chr6	143100748	143100948	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029897)	promoter-TSS (NM_029897)	-696.0	NM_001109688	74741.0	Mm.130260	NM_029081	ENSMUSG00000030279	C2cd5	5730419I09Rik|C030008B15Rik|CDP138	C2 calcium-dependent domain containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-55342001-3	chr4	55341899	55342099	+	901.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6B|LTR|ERVK	-8043.0	NM_009011	19359.0	Mm.196846	NM_009011	ENSMUSG00000028426	Rad23b	0610007D13Rik|AV001138|HR23B|mHR23B|p58	RAD23 homolog B, nucleotide excision repair protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5801174-4	chr19	5801088	5801288	+	920.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_002847, exon 1 of 1)	non-coding (NR_002847, exon 1 of 1)	1484.0	NR_002847	72289.0	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-43751796-2	chr2	43751696	43751896	+	771.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301831, intron 1 of 14)	(TG)n|Simple_repeat|Simple_repeat	2972.0	NM_001301831	76117.0	Mm.217350	NM_153820	ENSMUSG00000049744	Arhgap15	5830480G12Rik	Rho GTPase activating protein 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21630235-2	chr9	21630135	21630335	+	662.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357764, intron 1 of 34)	B2_Mm1a|SINE|B2	14066.0	NM_001174078	20586.0	Mm.286593	NM_011417	ENSMUSG00000032187	Smarca4	BAF190A|Brg1|HP1-BP72|SNF2beta|SW1/SNF|b2b508.1Clo|b2b692Clo	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78331710-3	chr15	78331616	78331816	+	905.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358854, intron 2 of 14)	intron (NM_001358854, intron 2 of 14)	5726.0	NM_007780	12983.0	Mm.235324	NM_007780	ENSMUSG00000071713	Csf2rb	AI848964|AIC2B|Bc|CDw131|Csf2rb1|Csfgmrb|Il3r|Il3rb|Il3rb1|Il5rb	colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153171471-1	chr2	153171371	153171571	+	542.0	f1_c57bl6.idr	intron (NM_133847, intron 1 of 17)	ID_B1|SINE|B4	10170.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-109120342-2	chr4	109120241	109120441	+	694.1999509999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355190, intron 2 of 21)	L1MC1|LINE|L1	-2305.0	NM_001134791	100273.0	Mm.366315	NM_133885	ENSMUSG00000028559	Osbpl9	2600011I06Rik|AU015843|Orp-9	oxysterol binding protein-like 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-127225863-3	chr1	127225763	127225963	+	862.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145128, intron 1 of 17)	intron (NM_145128, intron 1 of 17)	20877.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	2.04947478587791	2.56834576617168	2.59094251347897	2.41052718434329	1.92429394749542	1.73870352052808	3.24038003194429	2.53049380133052	0.199478538838181	0.814561477526182	0.998431161219273
Merged-chr10-11343669-4	chr10	11343576	11343776	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010146, exon 1 of 4)	exon (NM_010146, exon 1 of 4)	231.0	NM_010146	13853.0	Mm.89946	NM_010146	ENSMUSG00000055493	Epm2a	TG-B|Tg(TcraK,TcrbK)TG-BFlv	epilepsy, progressive myoclonic epilepsy, type 2 gene alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-100398843-2	chr12	100398743	100398943	+	746.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033213, intron 9 of 19)	intron (NM_001033213, intron 9 of 19)	121979.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-9748883-4	chr15	9748755	9748955	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177123)	promoter-TSS (NM_177123)	13.0	NM_177123	320277.0	Mm.127822	NM_177123	ENSMUSG00000072663	Spef2	C230086A09Rik	sperm flagellar 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96220892-4	chr3	96220789	96220989	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175662)	promoter-TSS (NM_175662)	-9.0	NM_175662	319176.0	Mm.358954	NM_175662	ENSMUSG00000068855	Hist2h2ac	H2a-613b	histone cluster 2, H2ac	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-86440705-4	chr1	86440616	86440816	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14387.0	NM_027966	71863.0	Mm.179627	NM_027966	ENSMUSG00000036574	Tex44	1700019O17Rik	testis expressed 44	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-37054242-2	chr9	37054142	37054342	+	692.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001029838, intron 2 of 12)	intron (NM_001029838, intron 2 of 12)	93080.0	NM_148950	208076.0	Mm.260335	NM_148950	ENSMUSG00000035934	Pknox2	D230005H23Rik|Prep2	Pbx/knotted 1 homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-62042473-2	chr14	62042373	62042573	+	753.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	250506.0	NM_173419	239133.0	Mm.127330	NM_173419	ENSMUSG00000048281	Dleu7	BC038059	deleted in lymphocytic leukemia, 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-184048166-3	chr1	184048056	184048256	+	889.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022019, intron 2 of 3)	intron (NM_022019, intron 2 of 3)	13775.0	NM_022019	63953.0	Mm.404024	NM_022019	ENSMUSG00000039384	Dusp10	2610306G15Rik|AI158871|MKP-5|MKP5	dual specificity phosphatase 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-132703270-2	chr7	132703170	132703370	+	611.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029609, intron 6 of 6)	intron (NM_029609, intron 6 of 6)	73646.0	NM_001347630	77938.0	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-97317574-2	chr7	97317474	97317674	+	583.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177412, intron 5 of 9)	MTC|LTR|ERVL-MaLR	8390.0	NM_001177412	244144.0	Mm.297541	NM_001177412	ENSMUSG00000035713	Usp35	Gm1088|Gm493	ubiquitin specific peptidase 35	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-72414964-2	chr4	72414864	72415064	+	708.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	213720.0	NR_027923	68285.0	Mm.37541	NR_027923		C630043F03Rik	AI851307	RIKEN cDNA C630043F03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-102930857-4	chr4	102930755	102930955	+	931.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144906, intron 17 of 23)	intron (NM_144906, intron 17 of 23)	-55524.0	NM_001163767	67344.0	Mm.111346	NM_026100	ENSMUSG00000028523	Tctex1d1	1700055O19Rik	Tctex1 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-126153993-2	chr4	126153893	126154093	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025856, intron 6 of 11)	B1_Mur4|SINE|Alu	5990.0	NM_172145	230752.0	Mm.41569	NM_172145	ENSMUSG00000050212	Eva1b	2610027C15Rik|Fam176b	eva-1 homolog B (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-16122561-4	chr19	16122464	16122664	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-10267.0	NM_008139	14682.0	Mm.439701	NM_008139	ENSMUSG00000024639	Gnaq	1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI	guanine nucleotide binding protein, alpha q polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-171719393-2	chr2	171719293	171719493	+	972.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	243406.0	NR_040509	75655.0	Mm.396203	NR_040509	ENSMUSG00000086823	1700028P15Rik	-	RIKEN cDNA 1700028P15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-32144776-2	chr12	32144734	32144934	+	657.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	63504.0	NM_001146201	30955.0	Mm.101369	NM_020272	ENSMUSG00000020573	Pik3cg	5830428L06Rik|PI3Kgamma|p110gamma	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-18473650-4	chr9	18473579	18473779	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028935)	promoter-TSS (NM_028935)	-34.0	NM_028160	72230.0	Mm.289689	NM_028160	ENSMUSG00000074500	Zfp558	1700007A21Rik|4932704I17Rik|Zfp558-ps	zinc finger protein 558	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-63151959-1	chr12	63151859	63152059	+	540.0	f1_c57bl6.idr	Intergenic	Lx|LINE|L1	464172.0	NR_131949	73309.0	Mm.276558	NR_131949		Spanxn4	1700047L15Rik	SPANX family, member N4	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-61514543-2	chr2	61514443	61514643	+	701.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64043.0	NM_011529	21353.0	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-142969012-2	chr7	142968912	142969112	+	676.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_008554, exon 1 of 3)	5' UTR (NM_008554, exon 1 of 3)	252.0	NM_008554	17173.0	Mm.196417	NM_008554	ENSMUSG00000009248	Ascl2	2410083I15Rik|Mash2|bHLHa45	achaete-scute family bHLH transcription factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-21411510-4	chr5	21411430	21411630	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029195, intron 1 of 18)	intron (NM_029195, intron 1 of 18)	13147.0	NM_029195	75172.0	Mm.426695	NM_029195	ENSMUSG00000064280	Ccdc146	4930528G09Rik|mKIAA1505	coiled-coil domain containing 146	protein-coding	0.478685762402527	0.608598073930088	0.130167142521462	0.126010510328954	0.487044361557658	0.617908376956725	0.131356999535196	0.126736040600567	0.040408840051822	0.98416007356102	1
Merged-chr17-35921331-2	chr17	35921231	35921431	+	760.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357740, intron 1 of 18)	intron (NM_001357740, intron 1 of 18)	2059.0	NM_001357740	52040.0	Mm.29385	NM_175934	ENSMUSG00000039220	Ppp1r10	2610025H06Rik|Cat53|D17Ertd808e|Fb19|Pnuts	protein phosphatase 1, regulatory subunit 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-105732083-1	chr12	105731983	105732183	+	594.0	f1_c57bl6.idr	intron (NM_030187, intron 5 of 17)	intron (NM_030187, intron 5 of 17)	26101.0	NM_030187	78801.0	Mm.36006	NM_030187	ENSMUSG00000041323	Ak7	4930502N02Rik|AK 7	adenylate kinase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46511007-4	chr19	46510909	46511109	+	989.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053100, intron 1 of 5)	intron (NM_053100, intron 1 of 5)	9361.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	2.96483226717066	1.71358743576234	2.21153165710566	2.69544129394949	2.93027243658367	1.44683619494063	2.22902638661775	2.70941964930993	-0.0737620047852396	0.935020977956927	0.998431161219273
Merged-chr2-101731060-2	chr2	101730960	101731160	+	621.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355625, intron 7 of 8)	intron (NM_001355625, intron 7 of 8)	52640.0	NM_001303273	22034.0	Mm.292729	NM_009424	ENSMUSG00000027164	Traf6	2310003F17Rik|AI851288|C630032O20Rik	TNF receptor-associated factor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-137886157-4	chr5	137886044	137886244	+	933.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14386.0	NM_001024932	545812.0	Mm.332769	NM_001024932	ENSMUSG00000066682	Pilrb2	EG545812	paired immunoglobin-like type 2 receptor beta 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-108829371-2	chr9	108829271	108829471	+	603.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001359573, exon 1 of 36)	exon (NM_001359573, exon 1 of 36)	3326.0	NM_001359572	107934.0	Mm.39945	NM_080437	ENSMUSG00000023473	Celsr3	Adgrc3|Fmi1|flamingo|mKIAA0812	cadherin, EGF LAG seven-pass G-type receptor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-59295441-3	chr4	59295359	59295559	+	671.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	35408.0	NR_105031	101055769.0	Mm.421401	NR_105031		Gm12596	-	predicted gene 12596	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-35196430-4	chr2	35196316	35196516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026697, intron 1 of 7)	intron (NM_026697, intron 1 of 7)	4704.0	NM_026697	68365.0	Mm.198264	NM_026697	ENSMUSG00000026878	Rab14	0610030G24Rik|2810475J17Rik|A830021G03Rik|AI314285|AI649155|D030017L14Rik	RAB14, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-127794429-2	chr3	127794324	127794524	+	783.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356430, intron 2 of 2)	ORR1D1|LTR|ERVL-MaLR	3767.0	NM_001356430	211550.0	Mm.31852	NM_145133	ENSMUSG00000046688	Tifa	T2bp	TRAF-interacting protein with forkhead-associated domain	protein-coding	1.12122101845876	1.627459861402	0.719246730713367	0.710070482581451	1.00716648469766	1.4208026499031	0.924818262338286	1.31475027506203	0.28681067515146	0.840111731321989	0.998431161219273
Merged-chr3-154286581-3	chr3	154286486	154286686	+	995.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43974.0	NM_010713	16875.0	Mm.15530	NM_010713	ENSMUSG00000096225	Lhx8	L3|Lhx7	LIM homeobox protein 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-43784181-2	chr7	43784081	43784281	+	685.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133712, intron 4 of 5)	intron (NM_133712, intron 4 of 5)	3127.0	NM_133712	69540.0	Mm.46421	NM_133712	ENSMUSG00000030693	Klk10	2300002A13Rik|NES1|PRSSL1	kallikrein related-peptidase 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-162612756-1	chr1	162612656	162612856	+	717.0	f0_balb.idr	Intergenic	Intergenic	-26394.0	NM_010865	17926.0	Mm.10694	NM_010865	ENSMUSG00000026697	Myoc	AI957332|GLC1A|TIGR	myocilin	protein-coding	0.894351085898091	0.269722662212153	0.263073335708055	0.25793440776456	0.825464788928639	0.469109174459044	0.264540953321156	0.801075226976383	0.907399248510286	0.640577964369779	1
Merged-chr4-34733660-4	chr4	34733543	34733743	+	834.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3437.0	NM_001347062	69329.0	Mm.389548	NM_027041	ENSMUSG00000028294	Cfap206	1700003M02Rik|AU024269	cilia and flagella associated protein 206	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102748319-4	chr12	102748232	102748432	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142939, intron 1 of 1)	intron (NM_001142939, intron 1 of 1)	4572.0	NM_177140	320351.0	Mm.86546	NM_177140	ENSMUSG00000046675	Tmem251	D230037D09Rik	transmembrane protein 251	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-128524780-2	chr7	128524680	128524880	+	593.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013863, intron 1 of 3)	intron (NM_013863, intron 1 of 3)	1197.0	NM_013863	29810.0	Mm.84073	NM_013863	ENSMUSG00000030847	Bag3	AA407278|Bis|mg638	BCL2-associated athanogene 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5616297-2	chr17	5616197	5616397	+	809.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	123697.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-33212023-4	chr15	33211914	33212114	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018755, intron 2 of 8)	MIR|SINE|MIR	128885.0	NM_176073	54381.0	Mm.158251	NM_018755	ENSMUSG00000039007	Cpq	1190003P12Rik|2610034C17Rik|Hls2|Lal-1|Pgcp	carboxypeptidase Q	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-62963796-2	chr14	62963696	62963896	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20714.0	NM_001037751	432867.0	Mm.99387	NM_001037751	ENSMUSG00000075574	Defb48	Defb42|EG432867	defensin beta 48	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-68383859-2	chr2	68383759	68383959	+	672.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016866, intron 5 of 17)	intron (NM_016866, intron 5 of 17)	88122.0	NM_016866	53416.0	Mm.198414	NM_016866	ENSMUSG00000027030	Stk39	AW227544|AW556857|DCHT|RF005|Rnl5|SPAK	serine/threonine kinase 39	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-93078628-2	chr10	93078480	93078680	+	633.0	f0_balb.idr|f0_c57.idr	intron (NM_001347060, intron 1 of 67)	intron (NM_001347060, intron 1 of 67)	3016.0	NM_001347060	380654.0	Mm.34980	NM_001347060	ENSMUSG00000020014	Cfap54	4930485B16Rik|Gm872	cilia and flagella associated protein 54	protein-coding	1.00468280320415	1.18839943810105	0.910016187191134	0.434441175917873	0.578233324933455	0.45050234015946	0.629369338434293	0.608491956193651	-2.15146630227891	0.19480429308806	1
Merged-chr12-64976130-4	chr12	64976005	64976205	+	822.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177805, intron 1 of 19)	intron (NM_177805, intron 1 of 19)	10363.0	NM_177805	328108.0	Mm.138465	NM_177805	ENSMUSG00000035614	Togaram1	A430041B07Rik|BC062107|C130034K06|Fam179b|mKIAA0423	TOG array regulator of axonemal microtubules 1	protein-coding	2.0195332821931	2.37797856419013	1.35935314471827	2.13451754263957	1.07614140711521	2.07516736179229	1.3682368141758	1.81622360316234	-1.07508621340725	0.325881057664254	0.828009237271235
Merged-chr15-88751498-4	chr15	88751394	88751594	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181412)	promoter-TSS (NM_181412)	-217.0	NM_181412	223773.0	Mm.396622	NM_181412	ENSMUSG00000034333	Zbed4	1700009F06Rik	zinc finger, BED type containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-93268989-4	chr5	93268897	93269097	+	992.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007635, intron 2 of 7)	intron (NM_007635, intron 2 of 7)	1424.0	NM_007635	12452.0	Mm.3527	NM_007635	ENSMUSG00000029385	Ccng2	-	cyclin G2	protein-coding	2.46006439309117	1.80637664326618	1.75151097734321	1.86727564201837	2.23825619315761	1.99546639964851	2.76302462233234	1.87628147308469	0.632666235260248	0.488949423041867	0.933746049075178
Merged-chr8-79491515-4	chr8	79491425	79491625	+	883.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-92057.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-137955690-1	chr4	137955590	137955790	+	661.0	f1_balb.idr	intron (NM_199307, intron 15 of 19)	intron (NM_199307, intron 15 of 19)	-37766.0	NM_001256198	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	1.55346102917038	1.75710018263367	0.981165026408731	2.04686029029791	1.67691165340677	2.1185845342059	0.985508778802176	1.18564570879353	-0.206741095059262	0.86713540656289	0.998431161219273
Merged-chr11-116005112-4	chr11	116005011	116005211	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005608, intron 32 of 39)	CpG	7608.0	NM_016905	14635.0	Mm.2820	NM_016905	ENSMUSG00000020766	Galk1	AA409894|GALK|Gk|Glk|Glk1	galactokinase 1	protein-coding	-0.054934998644239	-0.0156118237329986	1.66135590024973	-0.037924162345065	-0.052353821687102	-0.0128650495519871	0.782140667978037	-0.0361789559497021	-1.7713701616656	0.593944920200614	0.9706660979479
Merged-chr12-59129769-3	chr12	59129676	59129876	+	981.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001165254)	promoter-TSS (NM_001165254)	28.0	NM_001165254	338320.0	Mm.213215	NM_146034	ENSMUSG00000021000	Mia2	Ctage5|D12Bwg0579e|Mea6|Mgea|Mgea6	melanoma inhibitory activity 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-164874645-2	chr2	164874535	164874735	+	970.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4733.0	NM_146129	228866.0	Mm.241134	NM_146129	ENSMUSG00000039849	Pcif1	2310022K11Rik|C20orf67|F730014I05Rik	PDX1 C-terminal inhibiting factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-163647072-2	chr2	163646972	163647172	+	549.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16B2|LTR|ERVK	-1929.0	NM_012032	26943.0	Mm.218473	NM_012032	ENSMUSG00000017707	Serinc3	AA959945|AA960047|AIGP1|DIFF33|TMS-1|Tde1	serine incorporator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97996007-4	chr11	97995891	97996091	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_152188, exon 1 of 6)	non-coding (NR_152188, exon 1 of 6)	182.0	NM_207231	217151.0	Mm.277896	NM_207231	ENSMUSG00000038352	Arl5c	Arl12|BC065791	ADP-ribosylation factor-like 5C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-122884198-4	chr4	122884108	122884308	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007598, intron 1 of 12)	intron (NM_007598, intron 1 of 12)	1868.0	NM_001358035	12331.0	Mm.8687	NM_007598	ENSMUSG00000028656	Cap1	-	CAP, adenylate cyclase-associated protein 1 (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-32650960-3	chr9	32650845	32651045	+	796.355591	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45097.0	NM_011808	23871.0	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4911807-2	chr16	4911707	4911907	+	561.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357062, intron 4 of 17)	intron (NM_001357062, intron 4 of 17)	25707.0	NM_001357061	17237.0	Mm.291326	NM_029657	ENSMUSG00000022517	Mgrn1	2610042J20Rik|mKIAA0544|md|nc	mahogunin, ring finger 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-130382511-2	chr3	130382411	130382611	+	566.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198711, intron 2 of 34)	Lx8|LINE|L1	201666.0	NM_001244952	77018.0	Mm.91728	NM_029838	ENSMUSG00000058897	Col25a1	2700062B08Rik|CLAC-P	collagen, type XXV, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-61372690-2	chr10	61372590	61372790	+	822.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013753, intron 1 of 19)	intron (NM_013753, intron 1 of 19)	10833.0	NM_013753	27355.0	Mm.269699	NM_013753	ENSMUSG00000020092	Pald1	MMPAL|Pald|mKIAA1274	phosphatase domain containing, paladin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171942870-1	chr1	171942770	171942970	+	544.0	f1_balb.idr	3' UTR (NM_030710, exon 8 of 8)	3' UTR (NM_030710, exon 8 of 8)	-23514.0	NR_151536	105244010.0	Mm.417758	NR_151535		Gm37065	-	predicted gene, 37065	ncRNA	-0.423742822472523	-0.411447945361908	-0.23880923906708	0.294605356286141	-0.422976674160504	-0.410538198872519	-0.414591807507968	-0.111321856749094	-1.72482307574768	0.500514361394485	1
Merged-chr8-66357961-2	chr8	66357861	66358061	+	612.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175188, intron 4 of 7)	MTE2b-int|LTR|ERVL-MaLR	-28340.0	NM_001166375	72925.0	Mm.380457	NM_175188	ENSMUSG00000036469	March1	2900024D24Rik|BB085186	membrane-associated ring finger (C3HC4) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-108938433-2	chr12	108938333	108938533	+	878.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_177602, intron 2 of 6)	intron (NM_177602, intron 2 of 6)	44161.0	NM_177602	212198.0	Mm.342082	NM_177602	ENSMUSG00000040877	Wdr25	B930090D16Rik	WD repeat domain 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-23548076-2	chr17	23547976	23548176	+	569.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2723.0	NR_126485	320020.0	Mm.445111	NR_126484		6330415G19Rik	-	RIKEN cDNA 6330415G19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-75933624-4	chr5	75933517	75933717	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010612, exon 30 of 30)	3' UTR (NM_010612, exon 30 of 30)	44811.0	NM_010612	16542.0	Mm.285	NM_010612	ENSMUSG00000062960	Kdr	6130401C07|Flk-1|Flk1|Krd-1|Ly73|VEGFR-2|VEGFR2|orv|sVEGFR-2	kinase insert domain protein receptor	protein-coding	6.77840858424048	6.5551205864422	6.15839093427925	6.07500206197157	6.78139525612847	6.57570097996262	6.01462785382098	6.18791807205022	0.0017482164645226	0.99421324935505	0.998431161219273
Merged-chr2-137608736-3	chr2	137608628	137608828	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-492208.0	NM_013822	16449.0	Mm.22398	NM_013822	ENSMUSG00000027276	Jag1	ABE2|Gsfabe2|Htu|Ozz|Ser-1	jagged 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-30810353-2	chr10	30810253	30810453	+	760.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7027.0	NM_001358842	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-9978584-4	chr19	9978476	9978676	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2024.0	NR_073181	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-59673246-2	chr11	59673146	59673346	+	553.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_201245, intron 1 of 22)	MTC|LTR|ERVL-MaLR	10751.0	NM_012027	26936.0	Mm.2402	NM_012027	ENSMUSG00000005417	Mprip	9530046C02|AA536749|AI647711|C76423|Gm34094|RIP3|Rhoip3|mKIAA0864|p116Rip	myosin phosphatase Rho interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-111312439-2	chr9	111312339	111312539	+	738.214294	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164659, intron 1 of 21)	CpG	700.0	NM_001164659	320429.0	Mm.270754	NM_001164659	ENSMUSG00000062296	Trank1	A230061D21Rik|C030048J01Rik|Gm187|Lba1	tetratricopeptide repeat and ankyrin repeat containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-11696611-2	chr18	11696511	11696711	+	882.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081223, intron 5 of 18)	B1F|SINE|Alu	39262.0	NM_001081223	225182.0	Mm.154275	NM_175458	ENSMUSG00000041238	Rbbp8	9930104E21Rik|CtIP|RBBP-8|RIM|SAE2	retinoblastoma binding protein 8, endonuclease	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-51837522-4	chr13	51837414	51837614	+	961.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9161.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-69373146-3	chr12	69373142	69373342	+	898.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007481, exon 2 of 2)	exon (NM_007481, exon 2 of 2)	1092.0	NM_007481	11845.0	Mm.27308	NM_007481	ENSMUSG00000044147	Arf6	AI788669|AW496366	ADP-ribosylation factor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-130030019-3	chr2	130029927	130030127	+	964.944458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009374, exon 7 of 13)	exon (NM_009374, exon 7 of 13)	-13619.0	NR_105757	102466628.0		NR_105757	ENSMUSG00000098347	Mir6339	Gm27848|mmu-mir-6339	microRNA 6339	ncRNA	4.70693242536808	4.72636450945376	5.01710615582357	5.01251566131317	2.7791075171242	3.3182081626033	2.9140247145058	2.95048978459995	-2.58603695892927	1.69728796611963e-08	1.84012599555753e-06
Merged-chr11-51807188-2	chr11	51807088	51807288	+	568.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43525.0	NM_025535	66397.0	Mm.196592	NM_025535	ENSMUSG00000020386	Sar1b	2310075M17Rik|2900019I22Rik|CMRD|Sara1b|Sara2|Sarb	secretion associated Ras related GTPase 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-67259884-3	chr5	67259841	67260041	+	708.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028975)	promoter-TSS (NM_028975)	-624.0	NM_001285452	67878.0	Mm.23217	NM_028975	ENSMUSG00000037720	Tmem33	1110006G02Rik|1600019D15Rik|2410089A21Rik|2700052H22Rik|5430406L04Rik|AA388285|AI314185|AI426615|db83	transmembrane protein 33	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-38864697-2	chr6	38864597	38864797	+	596.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010433, intron 1 of 14)	intron (NM_010433, intron 1 of 14)	11493.0	NM_010433	15258.0	Mm.23790	NM_010433	ENSMUSG00000061436	Hipk2	1110014O20Rik|B230339E18Rik|Stank	homeodomain interacting protein kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-24708189-4	chr12	24708088	24708288	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009104)	promoter-TSS (NM_009104)	-66.0	NM_009104	20135.0	Mm.99	NM_009104	ENSMUSG00000020649	Rrm2	AA407299|R2	ribonucleotide reductase M2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-93252598-3	chr15	93252480	93252680	+	874.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033275, intron 4 of 7)	intron (NM_001033275, intron 4 of 7)	22599.0	NM_001357006	223827.0	Mm.22819	NM_001033275	ENSMUSG00000036197	Gxylt1	Glt8d3|Gm1228|Gm87	glucoside xylosyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-80079877-2	chr11	80079777	80079977	+	712.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_018776, intron 1 of 7)	intron (NM_018776, intron 1 of 7)	1114.0	NM_001277106	54394.0	Mm.272093	NM_018776	ENSMUSG00000017561	Crlf3	BB164954|Creme9|Cytor4	cytokine receptor-like factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-136251206-3	chr5	136251112	136251312	+	829.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291238, intron 20 of 22)	intron (NM_001291238, intron 20 of 22)	-6272.0	NM_018825	23921.0	Mm.425294	NM_018825	ENSMUSG00000005057	Sh2b2	Aps	SH2B adaptor protein 2	protein-coding	2.39328847507111	1.42877054096756	3.24348950904302	2.62739477375783	2.75743901844742	1.43771595743071	2.82217306008994	2.4300542917921	-0.227099292717438	0.80750964535468	0.998431161219273
Merged-chr11-78277496-3	chr11	78277391	78277591	+	973.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001002004, intron 24 of 38)	intron (NM_001002004, intron 24 of 38)	-13350.0	NM_001287206	216976.0	Mm.477146	NM_001045522		BC030499	BC037104|Sgk494	cDNA sequence BC030499	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105835521-4	chr8	105835421	105835621	+	998.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024445, intron 2 of 15)	intron (NM_024445, intron 2 of 15)	7777.0	NM_024445	72236.0	Mm.386810	NM_024445	ENSMUSG00000031893	Tsnaxip1	1700016K08Rik|TXI1	translin-associated factor X (Tsnax) interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101843857-2	chr7	101843757	101843957	+	738.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001303239, intron 2 of 5)	intron (NM_001303239, intron 2 of 5)	1474.0	NM_001303231	14276.0	Mm.439666	NM_008035	ENSMUSG00000032725	Folr2	FBP2|FR-P3|FR-beta|Folbp-2|Folbp2	folate receptor 2 (fetal)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-132526745-2	chr2	132526645	132526845	+	664.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36017.0	NR_028286	70371.0	Mm.394667	NR_028286	ENSMUSG00000086379	1700026D11Rik	-	RIKEN cDNA 1700026D11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-109551240-4	chr5	109551236	109551436	+	837.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7657.0	NM_016715	57914.0	Mm.35771	NM_016715	ENSMUSG00000033467	Crlf2	CRLM2|Ly114|Tpte2|Tslpr	cytokine receptor-like factor 2	protein-coding	0.112562091975477	0.475812786496883	-0.145925728676984	-0.149783462724819	-0.155237689000535	-0.139801202660881	0.43691798345489	-0.149109418999961	-0.550376288441947	0.814430060802098	1
Merged-chr13-52572666-4	chr13	52572581	52572781	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_046069, intron 1 of 3)	intron (NR_046069, intron 1 of 3)	544.0	NR_046069	100040572.0	Mm.278873	NR_046069		Gm2848	-	predicted gene 2848	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171607353-4	chr1	171607255	171607455	+	955.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_102726)	promoter-TSS (NR_102726)	-21.0	NR_102726	17085.0	Mm.560	NM_008534	ENSMUSG00000004707	Ly9	AI893573|CD229|Lgp100|Ly-9|SLAMF3|T100	lymphocyte antigen 9	protein-coding	1.75522721355778	1.64568467624813	1.14421312735617	2.44708757539561	2.59248690343745	1.17658436032186	2.17202962838895	1.86296514344774	0.541178398590361	0.625897515731952	0.980912176761026
Merged-chr6-32544311-4	chr6	32544203	32544403	+	969.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175750, intron 1 of 31)	intron (NM_175750, intron 1 of 31)	33162.0	NR_040277	319849.0	Mm.440860	NR_040277	ENSMUSG00000086763	Plxna4os1	B230378P21Rik	plexin A4, opposite strand 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-121604052-1	chr8	121603952	121604152	+	553.0	f1_balb.idr	exon (NM_080855, exon 12 of 13)	exon (NM_080855, exon 12 of 13)	13584.0	NM_026160	67443.0	Mm.28357	NM_026160	ENSMUSG00000031812	Map1lc3b	1010001C15Rik|Atg8|LC3b|Map1lc3	microtubule-associated protein 1 light chain 3 beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-48317299-3	chr17	48317186	48317386	+	869.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177083, intron 2 of 5)	URR1A|DNA|hAT-Charlie	1124.0	NM_177083	320148.0	Mm.123455	NM_177083	ENSMUSG00000043740	B430306N03Rik	Treml6	RIKEN cDNA B430306N03 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133847388-3	chr4	133847339	133847539	+	692.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001285506, exon 21 of 21)	3' UTR (NM_001285506, exon 21 of 21)	27292.0	NM_001285506	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	3.11753966310319	2.85835396418647	1.88691602026321	3.54826765737298	2.33964612631134	2.98207406296658	1.37993337950175	1.61329021434895	-1.42173121581436	0.109367539071066	0.518281641040431
Merged-chr7-28547576-7	chr7	28547408	28547608	+	815.128601	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081115)	promoter-TSS (NM_001081115)	-254.0	NM_001081115	233038.0	Mm.224815	NM_001081115	ENSMUSG00000047586	Nccrp1	1190020J12Rik|Gm163|NCCRP-1	non-specific cytotoxic cell receptor protein 1 homolog (zebrafish)	protein-coding	0.763235206023356	1.07666185666757	0.803626036842689	2.20002112377833	1.62801894607156	1.46864009839493	1.79414867659081	0.791394195674165	0.251562656067719	0.858820740586567	0.998431161219273
Merged-chr13-104976018-1	chr13	104975918	104976118	+	841.0	f0_balb.idr	intron (NM_029879, intron 3 of 5)	intron (NM_029879, intron 3 of 5)	78912.0	NM_029879	52882.0	Mm.100348	NM_029879	ENSMUSG00000021719	Rgs7bp	A930030I01Rik|AI842293|D13Bwg1146e|R7bp	regulator of G-protein signalling 7 binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-46702947-2	chr14	46702847	46703047	+	616.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29172.0	NR_131909	328385.0	Mm.271545	NR_131909	ENSMUSG00000115015	D330046F09Rik	Gm808	RIKEN cDNA D330046F09 gene	ncRNA	0.540895292193837	0.297261872603893	0.113658356868717	0.390735065794067	0.633867363932791	0.119710218967017	0.281411150264094	0.110528206924603	-0.257425713352882	0.895016842858841	1
Merged-chr3-95983167-2	chr3	95983067	95983267	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2343.0	NR_045872	668224.0	Mm.357766	NR_045872		Gm9054	EG668224	predicted gene 9054	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-107519563-4	chr7	107519451	107519651	+	747.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021889, intron 6 of 6)	intron (NM_021889, intron 6 of 6)	-47882.0	NM_172907	244198.0	Mm.77425	NM_172907	ENSMUSG00000051041	Olfml1	6720478C22|AV321997|BC047207|MVAL564|ONT2|mONT2	olfactomedin-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-85310793-4	chr11	85310697	85310897	+	979.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016910)	promoter-TSS (NM_016910)	-457.0	NM_016910	53892.0	Mm.45609	NM_016910	ENSMUSG00000020525	Ppm1d	AV338790|Wip1	protein phosphatase 1D magnesium-dependent, delta isoform	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-16278589-2	chr19	16278489	16278689	+	762.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008139, intron 2 of 6)	intron (NM_008139, intron 2 of 6)	36415.0	NR_105832	102465218.0		NR_105832	ENSMUSG00000098718	Mir496b	Gm28028|mmu-mir-496b	microRNA 496b	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-69182295-4	chr17	69182204	69182404	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355736, intron 1 of 21)	intron (NM_001355736, intron 1 of 21)	22948.0	NM_001355735	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99190070-3	chr7	99189981	99190181	+	939.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7368.0	NM_026384	67800.0	Mm.180189	NM_026384	ENSMUSG00000030747	Dgat2	0610010B06Rik|ARAT|DGAT-2	diacylglycerol O-acyltransferase 2	protein-coding	3.40375735143824	1.7471993507845	2.60291509215245	3.1638947579706	4.12529555101607	3.29974266543122	4.70297163578698	4.35720993346349	1.95604002905198	0.00140166307184112	0.0256098784811417
Merged-chr17-46258851-2	chr17	46258751	46258951	+	598.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001252473, exon 10 of 10)	exon (NM_001252473, exon 10 of 10)	4686.0	NM_001111142	224813.0	Mm.70999	NM_001111142	ENSMUSG00000071073	Lrrc73	Gm88	leucine rich repeat containing 73	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-99263929-3	chr10	99263884	99264084	+	995.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026268, exon 1 of 3)	exon (NM_026268, exon 1 of 3)	753.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-49597374-6	chr4	49597224	49597424	+	923.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_149725, exon 1 of 3)	non-coding (NR_149725, exon 1 of 3)	146.0	NR_149725	67063.0	Mm.454013	NM_025944	ENSMUSG00000039611	Tmem246	2810432L12Rik|9330170P15Rik|AI835809	transmembrane protein 246	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-60896570-2	chr13	60896470	60896670	+	663.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_007797, intron 2 of 4)	intron (NM_007797, intron 2 of 4)	877.0	NM_007797	13025.0	Mm.30144	NM_007797	ENSMUSG00000074874	Ctla2b	AW545568|Ctla-2b	cytotoxic T lymphocyte-associated protein 2 beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-5008154-1	chr11	5008054	5008254	+	610.0	f0_balb.idr	intron (NM_001243044, intron 1 of 21)	intron (NM_001243044, intron 1 of 21)	21330.0	NM_001355660	11764.0	Mm.274816	NM_007454	ENSMUSG00000009090	Ap1b1	Adtb1|b2b1660Clo	adaptor protein complex AP-1, beta 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-156761932-1	chr2	156761832	156762032	+	544.0	f1_c57bl6.idr	intron (NM_001042488, intron 6 of 6)	intron (NM_001042488, intron 6 of 6)	-13532.0	NM_172118	98932.0	Mm.271770	NM_172118	ENSMUSG00000067818	Myl9	AI327049|MLC20|Mylc2c|RLC-C	myosin, light polypeptide 9, regulatory	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-8755940-2	chr12	8755840	8756040	+	634.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-15456.0	NM_011519	20969.0	Mm.2580	NM_011519	ENSMUSG00000020592	Sdc1	AA408134|AA409076|CD138|Sstn|Synd|Synd1|syn-1	syndecan 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-92979595-2	chr7	92979495	92979695	+	865.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F1|SINE|Alu	-100284.0	NM_021427	58238.0	Mm.113787	NM_021427	ENSMUSG00000051515	Fam181b	A830059I20Rik|AB041569	family with sequence similarity 181, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-98712242-1	chr7	98712142	98712342	+	636.5	f0_balb.idr	intron (NM_001355114, intron 4 of 5)	intron (NM_001355114, intron 4 of 5)	8995.0	NM_028410	72981.0	Mm.4428	NM_028410	ENSMUSG00000030753	Thap12	2900052B10Rik|Dap4|Prkrir|Rpkrir	THAP domain containing 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70596093-2	chr8	70595982	70596182	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_023627, exon 7 of 11)	exon (NM_023627, exon 7 of 11)	1601.0	NM_023627	71780.0	Mm.29357	NM_023627	ENSMUSG00000019139	Isyna1	1300017C10Rik|AU018670	myo-inositol 1-phosphate synthase A1	protein-coding	0.983597896615681	0.208267067521337	0.201736900501404	0.364382641933013	0.579703601183478	0.209736886992571	0.203178575190023	0.745330623420886	-0.213203943348796	0.913841137871592	1
Merged-chr9-54499522-2	chr9	54499422	54499622	+	752.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172771, intron 1 of 43)	intron (NM_172771, intron 1 of 43)	2104.0	NM_172771	235380.0	Mm.93636	NM_172771	ENSMUSG00000041268	Dmxl2	6330586A12|6430411K14Rik|E130119P06Rik|mKIAA0856	Dmx-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-73028587-2	chr2	73028487	73028687	+	652.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPEY3_LTR|LTR|ERVK	-48141.0	NM_001018042	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-60613791-3	chr13	60613686	60613886	+	866.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	11575.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-40679177-4	chr19	40679081	40679281	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009848, intron 1 of 9)	HAL1|LINE|L1	19411.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-96543061-1	chr9	96542961	96543161	+	542.0	f1_c57bl6.idr	intron (NM_053268, intron 23 of 23)	B2_Mm2|SINE|B2	-64386.0	NM_001311135	19823.0	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44830906-2	chr7	44830806	44831006	+	586.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_053074, exon 2 of 2)	3' UTR (NM_053074, exon 2 of 2)	-5382.0	NM_010215	14204.0	Mm.2565	NM_010215	ENSMUSG00000074141	Il4i1	Fig1|Fig1-ps|LAAO|LAO	interleukin 4 induced 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-43818712-2	chr10	43818612	43818812	+	863.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7195.0	NR_131055	71018.0	Mm.410796	NR_131055	ENSMUSG00000111342	4933404K13Rik	-	RIKEN cDNA 4933404K13 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-97121190-1	chr7	97121090	97121290	+	597.0	f1_balb.idr	intron (NM_001162477, intron 1 of 9)	L1Md_F2|LINE|L1	39439.0	NM_010248	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	-1.26331444426203	-1.36355630584805	-1.52272189923659	-1.53053467210616	-1.54245435775007	-1.51114959732935	-1.52056877479163	-1.52913618949789	-1.90260483685633	0.584008459975193	1
Merged-chr5-129713228-2	chr5	129713128	129713328	+	831.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-2269.0	NM_001356956	66258.0	Mm.249809	NM_025450	ENSMUSG00000034211	Mrps17	1810006P02Rik|Mprs17	mitochondrial ribosomal protein S17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-117487586-3	chr12	117487538	117487738	+	783.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28841.0	NM_175930	217944.0	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-74802922-3	chr17	74802828	74803028	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152817, intron 13 of 19)	L1MB2|LINE|L1	85178.0	NM_152817	74196.0	Mm.209503	NM_152817	ENSMUSG00000024078	Ttc27	2610511O17Rik	tetratricopeptide repeat domain 27	protein-coding	5.54484591240614	5.80786796177866	5.60399447151178	5.5846087834813	3.99025647360678	3.28291844546842	2.44425234693151	3.59906853729316	-2.68939973131848	9.69308201794138e-12	2.52820865328827e-09
Merged-chr17-23741555-2	chr17	23741433	23741633	+	727.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028416, exon 10 of 10)	3' UTR (NM_028416, exon 10 of 10)	-1203.0	NM_023824	76498.0	Mm.491253	NM_023824	ENSMUSG00000023909	Paqr4	1500004C10Rik	progestin and adipoQ receptor family member IV	protein-coding	1.20517940469106	0.654087303550859	0.639689356814276	1.90460495072132	1.5904231483883	0.657287868052872	0.642893692902073	1.16707782239253	-0.51042969262957	0.748549008502967	0.998431161219273
Merged-chr5-7994225-4	chr5	7994117	7994317	+	946.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TTTTTG)n|Simple_repeat|Simple_repeat	33745.0	NM_054098	117167.0	Mm.31403	NM_054098	ENSMUSG00000012428	Steap4	1110021O17Rik|AI481214|Tiarp|Tnfaip9	STEAP family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-161728784-4	chr1	161728681	161728881	+	917.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	59714.0	NM_001205243	14103.0	Mm.3355	NM_010177	ENSMUSG00000000817	Fasl	APT1LG1|CD178|CD95-L|CD95L|Fas-L|Faslg|Tnfsf6|Tnlg1a|gld	Fas ligand (TNF superfamily, member 6)	protein-coding	3.20371719220555	3.88978517364476	4.71335227293819	4.9767832116536	2.50653221650007	3.99638751905138	3.93702707497723	3.81662594653651	-0.93788850093657	0.0943017577804525	0.475550312581511
Merged-chr11-118470432-4	chr11	118470316	118470516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6416.0	NM_172573	217364.0	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-129990978-2	chr7	129990878	129991078	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28813.0	NR_046077	100043150.0	Mm.334264	NR_046077	ENSMUSG00000108504	Gm4265	-	predicted gene 4265	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-109682317-4	chr8	109682223	109682423	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155034, intron 3 of 10)	intron (NR_155034, intron 3 of 10)	10971.0	NR_155034	71955.0	Mm.290036	NM_028018	ENSMUSG00000031729	Ist1	2400003C14Rik|AW536298|mKIAA0174	increased sodium tolerance 1 homolog (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55469361-3	chr19	55469272	55469472	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360431, intron 6 of 8)	intron (NM_001360431, intron 6 of 8)	153315.0	NM_001293686	53611.0	Mm.258637	NM_016862	ENSMUSG00000024983	Vti1a	1110014F16Rik|1110018K19Rik|4921537J05Rik|MVti1|MVti1a|Vti1|Vti1-rp2	vesicle transport through interaction with t-SNAREs 1A	protein-coding	0.989149426313886	1.16096134245562	1.43002797263684	1.06646451129154	2.93862854822255	4.02564719702735	2.96934747729901	2.86781661746223	5.79845270117836	1.70074190510342e-06	0.000102368736007178
Merged-chr7-4473659-1	chr7	4473559	4473759	+	566.0	f1_c57bl6.idr	intron (NM_026146, intron 12 of 19)	B1_Mus1|SINE|Alu	-2775.0	NR_028416	320749.0	Mm.396688	NR_028416		D630041G03Rik	-	RIKEN cDNA D630041G03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-125727458-2	chr10	125727358	125727558	+	657.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-238761.0	NM_177152	320398.0	Mm.275586	NM_177152	ENSMUSG00000020105	Lrig3	9030421L11Rik|9130004I02Rik|9430095K15Rik|mKIAA3016	leucine-rich repeats and immunoglobulin-like domains 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-79137100-3	chr12	79136993	79137193	+	932.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009705, intron 2 of 7)	L2b|LINE|L2	6305.0	NM_009705	11847.0	Mm.3506	NM_009705	ENSMUSG00000021125	Arg2	AII|AU022422	arginase type II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-23592753-4	chr17	23592653	23592853	+	996.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011747, intron 1 of 5)	CpG	-6501.0	NM_001356268	22654.0	Mm.40326	NM_011747	ENSMUSG00000062012	Zfp13	AI835008|Krox-8|Zfp-13	zinc finger protein 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-61933084-2	chr11	61932984	61933184	+	613.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RCHARR1|DNA|hAT-Charlie	-2827.0	NM_019921	56697.0	Mm.274404	NM_019921	ENSMUSG00000047804	Akap10	1500031L16Rik|B130049N18Rik|D-AKAP-2|D-AKAP2|PRKA10	A kinase (PRKA) anchor protein 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-50915832-3	chr11	50915726	50915926	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001294323, intron 1 of 5)	CpG	350.0	NM_178447	22678.0	Mm.259230	NM_009550	ENSMUSG00000049321	Zfp2	9930007F06Rik|Fnp-2|Zfp-2|mKR2|mkr-2|mszf87	zinc finger protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-54360298-4	chr3	54360157	54360357	+	781.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001198766)	promoter-TSS (NM_001198766)	-850.0	NM_001198766	50706.0	Mm.236067	NM_015784	ENSMUSG00000027750	Postn	A630052E07Rik|AI747096|OSF-2|Osf2|PLF|PN	periostin, osteoblast specific factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-4150968-4	chr7	4150882	4151082	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_021454)	TTS (NM_021454)	-1110.0	NM_175529	243813.0	Mm.347643	NM_175529	ENSMUSG00000043432	Leng9	9530024C23Rik|F630035L11Rik	leukocyte receptor cluster (LRC) member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-148533337-1	chr2	148533237	148533437	+	562.0	f1_c57bl6.idr	Intergenic	Intergenic	-89802.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-39945183-4	chr15	39945081	39945281	+	973.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1187.0	NM_172814	239393.0	Mm.39874	NM_172814	ENSMUSG00000022305	Lrp12	AI848829|C820005L12Rik|LRP-12	low density lipoprotein-related protein 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46948629-2	chr8	46948529	46948729	+	602.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38258.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-63906724-4	chr11	63906675	63906875	+	920.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018805, intron 1 of 1)	intron (NM_018805, intron 1 of 1)	15509.0	NM_018805	54710.0	Mm.274426	NM_018805	ENSMUSG00000070407	Hs3st3b1	3-OST-3B|3OST3B1|3Ost3b|AU041882|AW536289|Hs3st3b|m3-OST-3B	heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-95564397-7	chr9	95564283	95564483	+	927.676208	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4566.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-76944897-3	chr12	76944805	76945005	+	582.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361663, intron 3 of 4)	intron (NM_001361663, intron 3 of 4)	17343.0	NM_008558	17187.0	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-144274956-1	chr2	144274856	144275056	+	887.0	f0_balb.idr	intron (NM_001355688, intron 2 of 4)	intron (NM_001355688, intron 2 of 4)	4052.0	NM_001355688	74528.0	Mm.386817	NM_028984	ENSMUSG00000027424	Mgme1	8430406I07Rik|AI426476	mitochondrial genome maintenance exonuclease 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4052182-2	chr19	4052082	4052282	+	901.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7265.0	NM_144869	225884.0	Mm.440201	NM_144869	ENSMUSG00000058216	Gstp3	-	glutathione S-transferase pi 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-79440068-2	chr15	79439968	79440168	+	545.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359863, intron 1 of 10)	intron (NM_001359863, intron 1 of 10)	1750.0	NM_001289899	27373.0	Mm.30199	NM_013767	ENSMUSG00000022433	Csnk1e	AI426939|AI551861|AW457082|CK1epsilon|CKIe|KC1epsilon|tau	casein kinase 1, epsilon	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-158612117-2	chr2	158612017	158612217	+	606.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009508, intron 1 of 1)	intron (NM_009508, intron 1 of 1)	1359.0	NM_009508	22348.0	Mm.143404	NM_009508	ENSMUSG00000037771	Slc32a1	R75019|VGAT|Viaat	solute carrier family 32 (GABA vesicular transporter), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-48410556-2	chr17	48410456	48410656	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010913)	promoter-TSS (NM_010913)	106.0	NM_001357904	106821.0	Mm.203943	NM_207219	ENSMUSG00000040771	Oard1	AI314976|AW558560	O-acyl-ADP-ribose deacylase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-125587229-3	chr8	125587124	125587324	+	939.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015535, intron 2 of 2)	MTE2b|LTR|ERVL-MaLR	2586.0	NR_015535	75930.0	Mm.195663	NR_015535	ENSMUSG00000110629	4930567H12Rik	4930579P07Rik	RIKEN cDNA 4930567H12 gene	ncRNA	0.123808884652098	-0.297193364668393	-0.300803092128729	-0.153965482157882	0.133206119595723	-0.296376438004201	-0.300008958336588	-0.151382239697589	0.0388779243531755	0.986802470965998	1
Merged-chr18-82878061-3	chr18	82877958	82878158	+	776.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22161.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-105399160-4	chr7	105399067	105399267	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001242363, intron 1 of 12)	intron (NM_001242363, intron 1 of 12)	887.0	NM_001242364	74349.0	Mm.30254	NM_199009	ENSMUSG00000044465	Fam160a2	4632419K20Rik|6530415H11Rik|FHIP	family with sequence similarity 160, member A2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-117639554-2	chr12	117639454	117639654	+	570.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175930, intron 9 of 27)	intron (NM_175930, intron 9 of 27)	123075.0	NM_175930	217944.0	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-98849410-2	chr15	98849310	98849510	+	618.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001033276, exon 35 of 55)	exon (NM_001033276, exon 35 of 55)	-17902.0	NM_016781	19082.0	Mm.6670	NM_016781	ENSMUSG00000067713	Prkag1	AA571379|BB036179|Prkaac	protein kinase, AMP-activated, gamma 1 non-catalytic subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-34526383-4	chr19	34526328	34526528	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021460, intron 1 of 9)	intron (NM_021460, intron 1 of 9)	1046.0	NM_001111100	16889.0	Mm.157545	NM_021460	ENSMUSG00000024781	Lipa	AA960673|Lal|Lip-1|Lip1	lysosomal acid lipase A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-113606877-2	chr13	113606777	113606977	+	579.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_130796, intron 1 of 1)	intron (NM_130796, intron 1 of 1)	11687.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-85138741-3	chr16	85138638	85138838	+	913.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198825, intron 1 of 15)	intron (NM_001198825, intron 1 of 15)	34969.0	NM_001198825	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	2.57923128094191	2.44466005022926	3.46667315148682	2.84189475309147	2.99976363837034	3.68010653500768	3.80955036566039	2.7397422120334	0.809894018835567	0.216968197023536	0.707538695710375
Merged-chr8-101087075-2	chr8	101086975	101087175	+	609.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13B|LTR|ERVK	1670401.0	NR_132435	234624.0	Mm.124595	NM_175479	ENSMUSG00000052479	A330008L17Rik	-	RIKEN cDNA A330008L17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-83171893-4	chr15	83171802	83172002	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029787, intron 1 of 8)	CpG	306.0	NM_029787	109754.0	Mm.22560	NM_029787	ENSMUSG00000018042	Cyb5r3	0610016L08Rik|2500002N19Rik|C85115|Dia-1|Dia1|WU:AL591952.1-001|WU:AL591952.1-002|WU:AL591952.1-003|WU:Cyb5r3	cytochrome b5 reductase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-114931556-2	chr5	114931457	114931657	+	547.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359946, intron 2 of 4)	MTC|LTR|ERVL-MaLR	8317.0	NM_001359945	231655.0	Mm.95479	NM_145209	ENSMUSG00000041827	Oasl1	7530414C13Rik|oasl9	2'-5' oligoadenylate synthetase-like 1	protein-coding	-1.50485614052657	-1.4728793633067	-1.48254940467209	-1.49049266456696	-1.5026114298908	-1.47078382500327	-1.32820642235787	-1.18476303102282	2.06059569883262	0.550131326880388	1
Merged-chr16-95743605-2	chr16	95743505	95743705	+	690.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	41198.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-104366516-4	chr7	104366426	104366626	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7880.0	NM_175648	244183.0	Mm.347647	NM_175648	ENSMUSG00000052749	Trim30b	A530023O14Rik|Trim30-1	tripartite motif-containing 30B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-79641020-2	chr11	79640920	79641120	+	682.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175543, intron 3 of 14)	intron (NM_175543, intron 3 of 14)	-17857.0	NR_003283	790912.0	Mm.447313	NR_003283	ENSMUSG00000087434	Rab11fip4os1	Gm11202	RAB11 family interacting protein 4 (class II), opposite strand 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-113329174-2	chr6	113329074	113329274	+	637.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_149720, exon 3 of 7)	non-coding (NR_149720, exon 3 of 7)	2198.0	NM_010957	18294.0	Mm.43612	NM_010957	ENSMUSG00000030271	Ogg1	Mmh	8-oxoguanine DNA-glycosylase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-82402078-2	chr8	82401973	82402173	+	809.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001254747, intron 1 of 7)	intron (NM_001254747, intron 1 of 7)	513.0	NM_001254747	16168.0	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	0.729302150563197	0.791839656700511	0.772102500172969	1.60183805489083	0.733419358971145	1.74649173243048	2.15602659468018	1.82298757828969	2.29461871636667	0.117020413261773	0.536291412648875
Merged-chr8-19161737-4	chr8	19161634	19161834	+	972.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3847.0	NM_153115	78128.0	Mm.229357	NM_153115	ENSMUSG00000079842	Spag11a	9230111C08Rik|Bin1b|EP2Q|EP2e|Spag11	sperm associated antigen 11A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101972292-4	chr11	101972206	101972406	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028207, exon 3 of 3)	3' UTR (NM_028207, exon 3 of 3)	-5291.0	NM_024449	74499.0	Mm.265602	NM_024449	ENSMUSG00000001494	Sost	5430411E23Rik	sclerostin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-12258804-2	chr13	12258704	12258904	+	573.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081128)	promoter-TSS (NM_001081128)	-691.0	NM_001081128	238505.0	Mm.40335	NM_001081128	ENSMUSG00000021311	Mtr	AI894170|D830038K18Rik|MS	5-methyltetrahydrofolate-homocysteine methyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-84356890-2	chr1	84356790	84356990	+	666.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa-int|LTR|ERVL-MaLR	-72245.0	NM_001003948	98496.0	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4|P-CLI1	phosphotyrosine interaction domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166770910-2	chr2	166770810	166771010	+	773.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-22857.0	NM_023815	76367.0	Mm.330796	NM_023815	ENSMUSG00000042854	Trp53rkb	2810408M09Rik|4933401B08Rik|5630401H01Rik|Nori-2|PRPK|Tp53rk|Trp53rk|Trp53tk|mNori-2p	transformation related protein 53 regulating kinase B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-70825376-4	chr12	70825220	70825420	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028127)	promoter-TSS (NM_028127)	-194.0	NM_028127	319710.0	Mm.2962	NM_028127	ENSMUSG00000048285	Frmd6	2610019M19Rik|4930488L10Rik|AW212977|Willin	FERM domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128757652-1	chr2	128757552	128757752	+	543.0	f1_balb.idr	intron (NM_008587, intron 6 of 18)	Lx8|LINE|L1	58737.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-48444034-3	chr9	48443933	48444133	+	985.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10311.0	NR_026561	667933.0	Mm.491076	NR_026561		Gm8884	EG667933	predicted gene 8884	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-80643832-4	chr12	80643739	80643939	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026244)	promoter-TSS (NM_026244)	272.0	NM_007951	13877.0	Mm.246551	NM_007951	ENSMUSG00000021131	Erh	Mer|Prei1	ERH mRNA splicing and mitosis factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-35928984-2	chr3	35928884	35929084	+	663.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205361, intron 1 of 6)	intron (NM_001205361, intron 1 of 6)	1090.0	NM_033623	114893.0	Mm.374810	NM_033623	ENSMUSG00000027708	Dcun1d1	Rp42|SCCRO|Tes3|pTes3	DCN1, defective in cullin neddylation 1, domain containing 1 (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115322544-4	chr11	115322497	115322697	+	828.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001362400)	promoter-TSS (NM_001362400)	67.0	NM_001362400	237987.0	Mm.44542	NM_172801	ENSMUSG00000050201	Otop2	4732464P15	otopetrin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-18890556-1	chr2	18890456	18890656	+	788.5	f0_balb.idr	intron (NM_008845, intron 3 of 9)	intron (NM_008845, intron 3 of 9)	-88738.0	NR_131254	66774.0	Mm.87075	NR_131254	ENSMUSG00000097638	Carlr	4933439G12Rik|Carl	cardiac and apoptosis-related long non-coding RNA	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-94569513-4	chr16	94569405	94569605	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007890)	promoter-TSS (NM_007890)	-701.0	NM_007890	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-65671237-2	chr3	65671176	65671376	+	830.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037923, intron 2 of 2)	intron (NM_001037923, intron 2 of 2)	5048.0	NM_001166659	624866.0	Mm.296317	NM_001037923	ENSMUSG00000074579	Lekr1	EG546798|EG624866|Gm6534	leucine, glutamate and lysine rich 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-6524605-4	chr11	6524502	6524702	+	860.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_045893)	TTS (NR_045893)	-3644.0	NM_178440	246177.0	Mm.239554	NM_178440	ENSMUSG00000020437	Myo1g	E430002D17Rik	myosin IG	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97840688-3	chr11	97840596	97840796	+	786.866699	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080935)	promoter-TSS (NM_001080935)	-84.0	NM_001080935	68127.0	Mm.110270	NM_001080935	ENSMUSG00000050538	B230217C12Rik	AI840637	RIKEN cDNA B230217C12 gene	protein-coding	2.22627812691925	2.04627374370859	2.51038465031119	2.58981108697042	1.36765011695239	2.06183481381096	1.21377793762073	1.62036281484693	-2.08132110548434	0.0378588467393676	0.276672520262425
Merged-chr9-57431502-3	chr9	57431430	57431630	+	929.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152145, intron 3 of 6)	intron (NR_152145, intron 3 of 6)	8206.0	NM_001357913	66812.0	Mm.250508	NM_176831	ENSMUSG00000063849	Ppcdc	1810057I13Rik|8430432M10Rik	phosphopantothenoylcysteine decarboxylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-90107928-1	chr9	90107828	90108028	+	543.0	f1_balb.idr	intron (NM_001039147, intron 2 of 12)	intron (NM_001039147, intron 2 of 12)	6892.0	NM_001039147	21761.0	Mm.426209	NM_024431	ENSMUSG00000062270	Morf4l1	MORFRG15|MRG15|TEG-189|Tex189|mKIAA4002	mortality factor 4 like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5811301-5	chr19	5811295	5811495	+	717.450012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8723.0	NR_002847	72289.0	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0.262741226636786	0.87017065883581	1.2616782727246	0.275907644214796	0.264718748779098	0.295878943987145	1.18346067786085	0.277276291615011	-0.752483082244609	0.701490885268938	1
Merged-chr10-23176325-2	chr10	23176225	23176425	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010167, intron 3 of 18)	MTC|LTR|ERVL-MaLR	173565.0	NM_001347372	14051.0	Mm.332128	NM_010167	ENSMUSG00000010461	Eya4	B130023L16Rik	EYA transcriptional coactivator and phosphatase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-93628153-2	chr15	93628053	93628253	+	960.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32262.0	NM_001033217	106042.0	Mm.150314	NM_001033217	ENSMUSG00000036158	Prickle1	1110058P22Rik|AW215793|Prickle|b2b019Clo|mpk1	prickle planar cell polarity protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-86360387-2	chr1	86360287	86360487	+	748.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010880)	promoter-TSS (NM_010880)	813.0	NR_015507	319336.0	Mm.389155	NR_015507	ENSMUSG00000073627	C130036L24Rik	-	RIKEN cDNA C130036L24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-83699816-3	chr8	83699713	83699913	+	818.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177262)	promoter-TSS (NM_177262)	-634.0	NM_177262	320795.0	Mm.213000	NM_177262	ENSMUSG00000057672	Pkn1	DBK|F730027O18Rik|PAK1|PRK1|Pkn|Prkcl1|Stk3	protein kinase N1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-149862878-2	chr1	149862778	149862978	+	621.325012	f1_balb.idr|f1_c57bl6.idr	intron (NM_008869, intron 12 of 17)	intron (NM_008869, intron 12 of 17)	59561.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-15831989-4	chr17	15831885	15832085	+	892.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5399.0	NM_178615	68799.0	Mm.293466	NM_178615	ENSMUSG00000048027	Rgmb	1110059F19Rik|DRAGON	repulsive guidance molecule family member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-15982472-2	chr7	15982372	15982572	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081418, intron 6 of 13)	B3A|SINE|B2	-14937.0	NM_153068	259300.0	Mm.138215	NM_153068	ENSMUSG00000074364	Ehd2	BC027084|C130052H20Rik	EH-domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91740375-3	chr16	91740277	91740477	+	955.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110276, intron 1 of 15)	intron (NM_001110276, intron 1 of 15)	11006.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-61045904-1	chr14	61045804	61046004	+	541.0	f1_balb.idr	intron (NM_013869, intron 1 of 9)	intron (NM_013869, intron 1 of 9)	951.0	NM_013869	29820.0	Mm.281356	NM_013869	ENSMUSG00000060548	Tnfrsf19	AL023044|AW123854|TAJ|TAJ-ALPHA|TRADE|Troy	tumor necrosis factor receptor superfamily, member 19	protein-coding	-1.50874880059862	-1.47511716453926	-1.4852876488768	-1.49364198752927	-1.50638792193216	-0.992828729615453	-1.48298527415345	-1.4921465649048	2.3185461113984	0.50391666537493	1
Merged-chr3-95142390-4	chr3	95142271	95142471	+	881.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027206)	promoter-TSS (NM_027206)	-11.0	NM_027206	69769.0	Mm.34368	NM_027206	ENSMUSG00000013707	Tnfaip8l2	1810019A08Rik|AW610835|TIPE2	tumor necrosis factor, alpha-induced protein 8-like 2	protein-coding	1.09534885005229	0.226526358026661	0.219276045592855	0.876924215743001	0.495843492126561	0.228155118169108	0.220878694862715	0.392093324605325	-2.13916275848016	0.2749720235489	1
Merged-chr7-3303482-1	chr7	3303382	3303582	+	632.0	f0_c57.idr	promoter-TSS (NM_011102)	promoter-TSS (NM_011102)	-50.0	NM_001291434	18752.0	Mm.7980	NM_011102	ENSMUSG00000078816	Prkcg	PKCgamma|Pkcc|Prkcc	protein kinase C, gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-93272080-3	chr10	93271995	93272195	+	700.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001322265, intron 2 of 4)	intron (NM_001322265, intron 2 of 4)	39064.0	NM_001322268	13713.0	Mm.4454	NM_013508	ENSMUSG00000008398	Elk3	D430049E23Rik|Erp|Etrp|Net|Sap-2	ELK3, member of ETS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-8623086-4	chr5	8622970	8623170	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198620)	promoter-TSS (NM_198620)	-118.0	NM_198620	242819.0	Mm.332192	NM_198620	ENSMUSG00000040570	Rundc3b	Gm440	RUN domain containing 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-73192780-2	chr15	73192680	73192880	+	653.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-7833.0	NM_153178	239528.0	Mm.23095	NM_153178	ENSMUSG00000036698	Ago2	1110029L17Rik|2310051F07Rik|AI225898|AL022874|AW546247|Eif2c2|Gerp95|Gm10365|mKIAA4215	argonaute RISC catalytic subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-53850112-4	chr11	53850013	53850213	+	905.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033332, intron 1 of 3)	intron (NR_033332, intron 1 of 3)	9143.0	NR_033332	622459.0	Mm.479656	NR_033332	ENSMUSG00000081769	Gm12216	602-19-115	predicted gene 12216	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-12356634-2	chr15	12356534	12356734	+	557.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001081064)	TTS (NM_001081064)	35138.0	NM_025673	66629.0	Mm.157655	NM_025673	ENSMUSG00000022200	Golph3	4733401N08Rik|5730410D03Rik|AW413496	golgi phosphoprotein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-80475131-4	chr1	80475036	80475236	+	720.775024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040460, intron 2 of 2)	intron (NR_040460, intron 2 of 2)	29204.0	NR_040460	72208.0	Mm.396181	NR_040460	ENSMUSG00000101483	1700016L21Rik	CD11c-DTR|DCKO|DTR-GFP|DTR-GRP|Jr3|Tg(Itgax-DTR/EGFP)57Lan	RIKEN cDNA 1700016L21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-152265536-2	chr3	152265436	152265636	+	874.9166869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_199465, intron 1 of 12)	CpG	259.0	NM_001357206	68810.0	Mm.200188	NM_199465	ENSMUSG00000039103	Nexn	1110046H09Rik|AA553326|NELIN	nexilin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-88523630-4	chr15	88523530	88523730	+	855.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-76672.0	NM_027306	70073.0	Mm.45306	NM_027306	ENSMUSG00000054117	Zdhhc25	1700030J15Rik	zinc finger, DHHC domain containing 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120111019-2	chr11	120110919	120111119	+	564.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361699, intron 11 of 16)	intron (NM_001361699, intron 11 of 16)	12085.0	NM_001110242	208501.0	Mm.46699	NM_001110242	ENSMUSG00000078572	Ndufaf8	1810043H04Rik	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex assembly factor 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6157381-4	chr19	6157273	6157473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7066.0	NM_001356604	74481.0	Mm.159219	NM_028967	ENSMUSG00000039699	Batf2	B-ATF-2	basic leucine zipper transcription factor, ATF-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-90072486-4	chr3	90072411	90072611	+	974.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001293748)	promoter-TSS (NM_001293748)	-140.0	NM_001293748	59069.0	Mm.240839	NM_022314	ENSMUSG00000027940	Tpm3	TM30nm|TMnm|Tm5NM|Tpm-5|Tpm5|Trop-5|gamma-TM|hTM30nm|hTMnm	tropomyosin 3, gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-78235917-4	chr16	78235814	78236014	+	997.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	19540.0	NR_045698	100503619.0	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16845452-5	chr7	16845293	16845493	+	905.23999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178900, intron 1 of 17)	intron (NM_178900, intron 1 of 17)	2328.0	NM_178900	101540.0	Mm.1881	NM_178900	ENSMUSG00000041187	Prkd2	AI325941|PKD2	protein kinase D2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-75361617-1	chr18	75361517	75361717	+	629.0	f1_balb.idr	intron (NR_155535, intron 6 of 6)	B2_Mm2|SINE|B2	5471.0	NR_155535	102636262.0	Mm.421168	NR_155535		Gm20544	-	predicted gene 20544	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141014013-2	chr4	141013913	141014113	+	687.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161799, intron 3 of 8)	intron (NM_001161799, intron 3 of 8)	3376.0	NM_008546	17150.0	Mm.7386	NM_008546	ENSMUSG00000060572	Mfap2	AI893631|Magp|Magp1	microfibrillar-associated protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-10087292-1	chr11	10087192	10087392	+	666.0	f1_balb.idr	Intergenic	Intergenic	895350.0	NM_178259	268379.0	Mm.39270	NM_178259	ENSMUSG00000004668	Abca13	9830132L24|A930002G16Rik|AI956815	ATP-binding cassette, sub-family A (ABC1), member 13	protein-coding	-0.953721354153451	-1.41025554057125	-1.42001056191158	-1.42802362688808	-1.44024889148474	-1.40814158675276	-1.41780223890411	-1.42658929208844	-2.11310844444413	0.543369238581748	1
Merged-chr3-116146804-2	chr3	116146704	116146904	+	835.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-17116.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-178410485-2	chr1	178410385	178410585	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026626, intron 1 of 6)	B4A|SINE|B4	4467.0	NM_026626	68226.0	Mm.252132	NM_026626	ENSMUSG00000026495	Efcab2	1700073K01Rik|D830011E08Rik	EF-hand calcium binding domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-155322375-4	chr1	155322269	155322469	+	971.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011273, intron 7 of 14)	intron (NM_011273, intron 7 of 14)	95075.0	NM_011273	19775.0	Mm.266215	NM_011273	ENSMUSG00000026469	Xpr1	Rmc-1|Rmc1|Sxv|Syg1|XR	xenotropic and polytropic retrovirus receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-86506910-2	chr1	86506810	86507010	+	709.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19647.0	NR_153834	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-61555185-4	chr18	61555093	61555293	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146087)	promoter-TSS (NM_146087)	-80.0	NM_001357499	93687.0	Mm.26908	NM_146087	ENSMUSG00000024576	Csnk1a1	2610208K14Rik|4632404G05Rik|5430427P18Rik|CK1a|Csnk1a	casein kinase 1, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119254516-2	chr11	119254416	119254616	+	600.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175430, intron 16 of 18)	intron (NM_175430, intron 16 of 18)	-13447.0	NM_001159324	14387.0	Mm.4793	NM_008064	ENSMUSG00000025579	Gaa	E430018M07Rik	glucosidase, alpha, acid	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-120189430-3	chr10	120189313	120189513	+	683.444458	f0_balb.idr|f0_c57.idr|f1_balb.idr	intron (NM_001359184, intron 1 of 11)	intron (NM_001359184, intron 1 of 11)	12184.0	NM_028679	73914.0	Mm.146194	NM_028679	ENSMUSG00000020227	Irak3	4833428C18Rik|AI563835|IRAK-M	interleukin-1 receptor-associated kinase 3	protein-coding	-0.832822572573898	-0.822866066773201	-0.502597977222482	-0.828996779275626	-0.267730259675128	-0.82010209592762	-0.826024884548054	-0.828593448413354	0.960833101895374	0.753318189148752	1
Merged-chr17-34317421-3	chr17	34317307	34317507	+	961.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010382)	TTS (NM_010382)	-8268.0	NM_001033978	381091.0	Mm.139204	NM_001033978	ENSMUSG00000067341	H2-Eb2	A130038H09Rik|H-2Eb2|Ia-5|Ia5|Iebeta2	histocompatibility 2, class II antigen E beta2	protein-coding	3.72646538205712	3.62322907850944	4.03124663432303	3.08126145656311	4.40264704298258	4.61877660924261	4.18030506544398	3.21258733988487	0.751374833468726	0.13896580689395	0.58234864068479
Merged-chr5-65960476-4	chr5	65960366	65960566	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6658.0	NM_001081104	231252.0	Mm.140015	NM_001081104	ENSMUSG00000029205	Chrna9	2410015I05Rik|Acra9|EG666827|Gm8311	cholinergic receptor, nicotinic, alpha polypeptide 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-9027521-4	chr3	9027423	9027623	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22800.0	NM_001357075	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	5.40792912764907	5.54611997908178	4.77634036527354	5.86012637288755	6.11347617120336	5.23051492080151	5.62166853437562	5.55323610738966	0.253067612914301	0.411724103243183	0.894597257730009
Merged-chr19-5663737-4	chr19	5663644	5663844	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164482)	promoter-TSS (NM_001164482)	-37.0	NM_001164480	20469.0	Mm.3072	NM_011379	ENSMUSG00000056917	Sipa1	Spa1	signal-induced proliferation associated gene 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-29237245-3	chr19	29237147	29237347	+	625.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14556.0	NM_001048177	16452.0	Mm.275839	NM_008413	ENSMUSG00000024789	Jak2	Fd17	Janus kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-8842081-3	chr17	8841971	8842171	+	831.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011866, intron 1 of 21)	intron (NM_011866, intron 1 of 21)	-7914.0	NM_001347321	23984.0	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-166342739-3	chr1	166342623	166342823	+	643.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36444.0	NM_030245	27878.0	Mm.100665	NM_030245	ENSMUSG00000026563	Tada1	2900026B15Rik|D1Ertd251e|Staf42|Tada1l	transcriptional adaptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99092230-2	chr7	99092130	99092330	+	810.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 4 of 14)	L1MD|LINE|L1	48914.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	0.785942130927346	0.275092972693987	0.269392632533071	0.665442303814709	0.514017477470189	0.615831152381476	0.270648178614194	0.554905727207824	-0.211955273470066	0.907703992198142	1
Merged-chr12-98820793-4	chr12	98820709	98820909	+	998.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081191, intron 28 of 43)	intron (NM_001081191, intron 28 of 43)	49787.0	NM_001160108	75553.0	Mm.25549	NM_029334	ENSMUSG00000021012	Zc3h14	1010001P15Rik|1700016A15Rik|2700069A02Rik|AU014748	zinc finger CCCH type containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-91710316-2	chr12	91710216	91710416	+	570.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 4 of 6)	intron (NM_175367, intron 4 of 6)	76120.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-40763606-4	chr11	40763504	40763704	+	794.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-8318.0	NM_009831	12450.0	Mm.2103	NM_009831	ENSMUSG00000020326	Ccng1	AI314029	cyclin G1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-74832949-4	chr11	74832869	74833069	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010813, intron 1 of 5)	intron (NM_010813, intron 1 of 5)	2045.0	NM_010813	17428.0	Mm.3759	NM_010813	ENSMUSG00000000282	Mnt	Rox|bHLHd3	max binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123903097-4	chr5	123903004	123903204	+	881.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4171.0	NM_026603	68184.0	Mm.28549	NM_026603	ENSMUSG00000023106	Denr	1500003K04Rik	density-regulated protein	protein-coding	2.04472121033145	2.9695301286695	1.8118180275578	2.788821644092	2.66735555634707	3.26541936600654	2.98830241239211	3.1394655672992	1.02466144163602	0.166624805737025	0.632246811901591
Merged-chr8-104353761-2	chr8	104353661	104353861	+	842.8333130000001	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_153582, exon 4 of 4)	3' UTR (NM_153582, exon 4 of 4)	13167.0	NM_024217	68119.0	Mm.390108	NM_024217	ENSMUSG00000031875	Cmtm3	9430096L06Rik|AI413895|BNAS2|Cklfsf3	CKLF-like MARVEL transmembrane domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-20125461-2	chr10	20125361	20125561	+	835.700012	f1_balb.idr|f1_c57bl6.idr	intron (NM_008580, intron 24 of 29)	intron (NM_008580, intron 24 of 29)	-23459.0	NM_008635	17761.0	Mm.20928	NM_008635	ENSMUSG00000019996	Map7	E-MAP-115|MAP-7|Mtap7|R75000|mshi|mste|ste	microtubule-associated protein 7	protein-coding	1.00521902854101	2.77149110253358	1.92761492602912	2.12464489677775	1.01252339439894	2.79356702759057	1.08712108220358	2.24726998838382	-0.188397484861883	0.875119935887867	0.998431161219273
Merged-chr12-77238038-4	chr12	77237949	77238149	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016893)	promoter-TSS (NM_016893)	-55.0	NM_001252614	53618.0	Mm.35628	NM_016893	ENSMUSG00000021065	Fut8	-	fucosyltransferase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-118106175-2	chr10	118106075	118106275	+	657.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35612.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-133492112-2	chr2	133492012	133492212	+	734.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60047.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-143295657-6	chr7	143295501	143295701	+	775.733337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_001461, exon 1 of 1)	non-coding (NR_001461, exon 1 of 1)	946.0	NR_001461	63830.0	Mm.356096	NR_001461	ENSMUSG00000101609	Kcnq1ot1	Kvlqt1-as|Lit1|Tssc8	KCNQ1 overlapping transcript 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-81202584-4	chr7	81202544	81202744	+	880.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11160.0	NM_008803	18584.0	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-110624503-3	chr9	110624382	110624582	+	730.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026012)	promoter-TSS (NM_026012)	-89.0	NM_026012	67169.0	Mm.46680	NM_026012	ENSMUSG00000032491	Nradd	2610311B09Rik|BB104149|NRDD|NRH2|PLAIDD	neurotrophin receptor associated death domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-82902767-1	chr6	82902667	82902867	+	643.0	f0_balb.idr	Intergenic	L1MC4a|LINE|L1	-20914.0	NR_040520	69652.0	Mm.96357	NR_040520	ENSMUSG00000100291	2310069B03Rik	-	RIKEN cDNA 2310069B03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-148149430-2	chr4	148149330	148149530	+	677.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_015797, exon 2 of 6)	exon (NM_015797, exon 2 of 6)	-2434.0	NR_105989	102465619.0		NR_105989	ENSMUSG00000099043	Mir7022	Gm27291|mmu-mir-7022	microRNA 7022	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-95181776-2	chr10	95181676	95181876	+	769.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001330138, intron 2 of 2)	intron (NM_001330138, intron 2 of 2)	-35951.0	NR_131146	628062.0		NR_131146	ENSMUSG00000112481	Gm29684	-	predicted gene, 29684	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70107599-4	chr14	70107500	70107700	+	804.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021328, intron 1 of 8)	intron (NM_021328, intron 1 of 8)	7507.0	NM_001360404	57784.0	Mm.24186	NM_021328	ENSMUSG00000022089	Bin3	1700015F07Rik	bridging integrator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-25900753-4	chr15	25900644	25900844	+	955.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034851, intron 3 of 8)	intron (NM_001034851, intron 3 of 8)	-32808.0	NM_001277318	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-180702948-4	chr2	180702817	180703017	+	835.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175551)	promoter-TSS (NM_175551)	-815.0	NM_175551	23856.0	Mm.253836	NM_011805	ENSMUSG00000038914	Dido1	6720461J16Rik|D130048F08Rik|DATF-1|DIO-1|Datf1|dido	death inducer-obliterator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-57653840-2	chr9	57653740	57653940	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001304761)	promoter-TSS (NM_001304761)	-209.0	NM_001304761	12988.0	Mm.21974	NM_007783	ENSMUSG00000032312	Csk	AW212630|p50CSK	c-src tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-77329318-4	chr16	77329213	77329413	+	848.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015543)	promoter-TSS (NR_015543)	-15.0	NR_015543	77994.0	Mm.394688	NR_015543	ENSMUSG00000090386	Mir99ahg	2810055G20Rik|D730043B02Rik	Mir99a and Mirlet7c-1 host gene (non-protein coding)	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-54630123-1	chr14	54630023	54630223	+	673.0	f1_balb.idr	TTS (NM_175204)	TTS (NM_175204)	4813.0	NM_175204	73902.0	Mm.32009	NM_175204	ENSMUSG00000072423	Psmb11	5830406J20Rik|beta5t	proteasome (prosome, macropain) subunit, beta type, 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-58324743-2	chr2	58324643	58324843	+	905.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033369)	promoter-TSS (NM_001033369)	64.0	NM_001033369	269275.0	Mm.77751	NM_001033369	ENSMUSG00000026834	Acvr1c	ACTR-IC|ACVRLK7|ALK7|Alk-7|C230097P10	activin A receptor, type IC	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-9701215-2	chr1	9701126	9701326	+	769.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1017.0	NM_008651	17864.0	Mm.479	NM_008651	ENSMUSG00000025912	Mybl1	A-myb|G1-419-6|repro9	myeloblastosis oncogene-like 1	protein-coding	1.41636105833528	1.31045386199654	1.4161201540234	0.868353140221187	1.62557227823246	1.32010715030355	1.96205177242278	0.870457600139224	0.877810120219761	0.499789057875035	0.938059363548374
Merged-chr5-3369529-4	chr5	3369442	3369642	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 2 of 7)	intron (NM_009873, intron 2 of 7)	25649.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-31767909-3	chr2	31767777	31767977	+	842.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001283045, intron 1 of 10)	intron (NM_001283045, intron 1 of 10)	7704.0	NM_001283045	11350.0	Mm.1318	NM_009594	ENSMUSG00000026842	Abl1	AI325092|Abl|E430008G22Rik|c-Abl	c-abl oncogene 1, non-receptor tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-68459127-2	chr11	68459027	68459227	+	958.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177320, intron 1 of 18)	intron (NM_177320, intron 1 of 18)	27002.0	NM_177320	320207.0	Mm.244960	NM_177320	ENSMUSG00000020901	Pik3r5	AV230647|F730038I15Rik|Foap2|p101	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116196704-2	chr11	116196602	116196802	+	620.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271898, intron 2 of 13)	ID|SINE|ID	-2153.0	NM_027107	69535.0	Mm.390347	NM_027107	ENSMUSG00000020778	Ten1	2310004N24Rik	TEN1 telomerase capping complex subunit	protein-coding	0.621507713009969	-0.18497397981436	-0.190404612244911	-0.194609387495799	0.486623827310296	-0.183752760095921	-0.189205001144065	-0.193873865727028	-0.364167561676594	0.884819895342695	1
Merged-chr7-17024008-4	chr7	17023866	17024066	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011155, intron 1 of 12)	intron (NM_011155, intron 1 of 12)	3948.0	NM_011155	19060.0	Mm.3294	NM_011155	ENSMUSG00000003099	Ppp5c	AU020526|PP5	protein phosphatase 5, catalytic subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-88263730-5	chr1	88263692	88263892	+	817.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040291, exon 5 of 5)	non-coding (NR_040291, exon 5 of 5)	5616.0	NR_040291	78605.0	Mm.384762	NR_040291		6430706D22Rik	-	RIKEN cDNA 6430706D22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-109246224-3	chr3	109246133	109246333	+	856.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-94450.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	-1.05877568042897	-1.03501312238488	-1.04817210678232	-1.05426068996071	-1.05810152525527	-1.03216151557194	-0.188696606725984	-1.05378786495764	3.16074139804981	0.330468818528456	1
Merged-chr18-34867872-2	chr18	34867806	34868006	+	740.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6699.0	NM_007913	13653.0	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-67088777-3	chr15	67088669	67088869	+	820.866699	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	88113.0	NM_009177	20442.0	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	1.86467315396336	2.40392072468763	1.89941942440348	1.17009096789589	1.76948112385739	1.97964198430732	1.91412909975307	1.72278089191961	-0.188421594037822	0.855291508452858	0.998431161219273
Merged-chr13-49202456-2	chr13	49202356	49202556	+	878.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_026738)	TTS (NM_026738)	13570.0	NM_026738	68480.0	Mm.3336	NM_026738	ENSMUSG00000037960	Card19	1110007C09Rik|AI851695|Bincard	caspase recruitment domain family, member 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-77276317-4	chr2	77276226	77276426	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175465, intron 1 of 17)	intron (NM_175465, intron 1 of 17)	4266.0	NM_175465	228071.0	Mm.27120	NM_175465	ENSMUSG00000042272	Sestd1	1500031J16Rik|A930010O20|Solo/Trio8	SEC14 and spectrin domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-47188432-4	chr6	47188331	47188531	+	861.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004357, intron 20 of 23)	intron (NM_001004357, intron 20 of 23)	-55965.0	NM_025771	66797.0	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	4.1669062058645	3.09340952649225	4.23166566942644	3.86635014574481	3.76401320123532	4.66431630227844	4.69990713949538	4.72450249829245	0.785345105224978	0.0886551680585352	0.458748435753151
Merged-chr11-119677333-4	chr11	119677228	119677428	+	923.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028898, intron 3 of 33)	intron (NM_028898, intron 3 of 33)	74423.0	NM_028898	74370.0	Mm.209933	NM_028898	ENSMUSG00000025583	Rptor	4932417H02Rik|Rap|Raptor|mKIAA1303	regulatory associated protein of MTOR, complex 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-38393757-1	chr18	38393657	38393857	+	605.0	f0_balb.idr	Intergenic	MER33|DNA|hAT-Charlie	-25150.0	NM_022996	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-55385092-4	chr12	55384983	55385183	+	914.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310583, intron 1 of 6)	intron (NM_001310583, intron 1 of 6)	861.0	NM_001310583	26443.0	Mm.30210	NM_011968	ENSMUSG00000021024	Psma6	IOTA	proteasome (prosome, macropain) subunit, alpha type 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-26316025-2	chr2	26315925	26316125	+	611.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355575, intron 1 of 13)	intron (NM_001355575, intron 1 of 13)	492.0	NM_153410	67839.0	Mm.266611	NM_153410	ENSMUSG00000026930	Gpsm1	1810037C22Rik|AW107933|Ags3	G-protein signalling modulator 1 (AGS3-like, C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3911947-2	chr12	3911847	3912047	+	854.583374	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001271753, exon 23 of 23)	3' UTR (NM_001271753, exon 23 of 23)	20203.0	NM_153743	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-14836942-3	chr3	14836840	14837040	+	746.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	-26598.0	NM_007606	12350.0	Mm.300	NM_007606	ENSMUSG00000027559	Car3	BB219044|Ca3|Car-3	carbonic anhydrase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-112210817-2	chr5	112210717	112210917	+	639.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_045377)	TTS (NR_045377)	4054.0	NR_045378	75569.0	Mm.243721	NR_045377	ENSMUSG00000101683	1700028D13Rik	-	RIKEN cDNA 1700028D13 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-66319496-3	chr5	66319383	66319583	+	805.966675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310626, intron 10 of 15)	intron (NM_001310626, intron 10 of 15)	18182.0	NM_001201416	11787.0	Mm.5159	NM_009686	ENSMUSG00000029207	Apbb2	2310007D03Rik|FE65L1|Rirl1|TR2L|Zfra	amyloid beta (A4) precursor protein-binding, family B, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-49939100-4	chr16	49938990	49939190	+	983.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16740.0	NR_153658	100503490.0	Mm.72499	NR_153658		Gm19723	-	predicted gene, 19723	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78247853-4	chr15	78247743	78247943	+	978.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008677, intron 1 of 9)	intron (NM_008677, intron 1 of 9)	3032.0	NM_008677	17972.0	Mm.2068	NM_008677	ENSMUSG00000071715	Ncf4	AI451400|p40phox	neutrophil cytosolic factor 4	protein-coding	4.20874558226836	4.05787955859548	4.68847179403744	4.52163839421101	4.94669021350289	4.82256441253236	4.02767185203597	5.51088907809222	0.667312740451864	0.0999006660172569	0.491635845313802
Merged-chr7-44896991-2	chr7	44896891	44897091	+	894.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_027376, exon 3 of 11)	exon (NM_027376, exon 3 of 11)	912.0	NM_027376	70300.0	Mm.276298	NM_027376	ENSMUSG00000011658	Fuz	2600013E07Rik|b2b1273Clo	fuzzy planar cell polarity protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-47736249-4	chr9	47736129	47736329	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	81979.0	NR_046048	100038460.0	Mm.447649	NR_046048		Gm10677	-	predicted gene 10677	ncRNA	5.2757436999009	5.45495606780188	5.00676985043122	5.20291400750647	4.36603139265671	4.03486904282706	4.61250814534866	4.26087799853748	-1.10315328147056	0.00111935555690107	0.0212500442590174
Merged-chr13-30659395-2	chr13	30659295	30659495	+	618.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001037955)	promoter-TSS (NM_001037955)	-664.0	NM_001037955	105352.0	Mm.289646	NM_134068	ENSMUSG00000069255	Dusp22	JKAP|JSP1|LMW-DSP2|MKPX	dual specificity phosphatase 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-115710293-3	chr9	115710222	115710422	+	791.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-199133.0	NM_028638	73748.0	Mm.485018	NM_028638	ENSMUSG00000056880	Gadl1	1110027M19Rik|ADC|CSADC	glutamate decarboxylase-like 1	protein-coding	-1.08120490705759	-1.06173973343125	-1.07249735266572	-0.921468072836018	-0.716385898161223	-1.05940851246666	-1.07006206347133	-0.91895648481258	1.54026781326716	0.61075092937384	1
Merged-chr18-63864458-3	chr18	63864354	63864554	+	939.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001014981, intron 20 of 27)	intron (NM_001014981, intron 20 of 27)	155759.0	NM_001014981	104082.0	Mm.30850	NM_001014981	ENSMUSG00000040560	Wdr7	AI462727|TRAG|mKIAA0541	WD repeat domain 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-151653651-4	chr1	151653548	151653748	+	859.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022018, intron 5 of 13)	intron (NM_022018, intron 5 of 13)	82275.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-59723313-4	chr9	59723239	59723439	+	839.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15575.0	NM_001033498	546134.0	Mm.297580	NM_001033498	ENSMUSG00000074259	Gramd2	BC064463|Gramd2a	GRAM domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150490025-1	chr4	150489925	150490125	+	916.0	f1_balb.idr	intron (NM_001085492, intron 7 of 22)	intron (NM_001085492, intron 7 of 22)	162149.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	1.60189579333204	2.49652643472849	0.850136657242944	0.831988285355959	1.2084008229901	1.97820193874376	1.64899222664978	0.835200842095957	-0.461547597786812	0.730613149670434	0.998431161219273
Merged-chr7-28675968-2	chr7	28675901	28676101	+	752.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	MURVY-LTR|LTR|ERV1	-16848.0	NM_207238	233040.0	Mm.116116	NM_207238	ENSMUSG00000037463	Fbxo27	E130008B10Rik|FBG5|Gm161	F-box protein 27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-70282307-4	chr9	70282189	70282389	+	997.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181072, intron 1 of 27)	intron (NM_181072, intron 1 of 27)	74939.0	NM_181072	71602.0	Mm.249311	NM_181072	ENSMUSG00000032220	Myo1e	2310020N23Rik|9130023P14Rik|AA407778|myosin-1e|myr 3	myosin IE	protein-coding	1.85334016382002	1.52749873707503	1.68859549889965	2.3020190266742	2.52132547367261	2.91157741083127	1.87793242596436	1.45139008167817	1.05988297386566	0.275735097641824	0.77982362793126
Merged-chr2-129306200-4	chr2	129306075	129306275	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040371, exon 4 of 5)	non-coding (NR_040371, exon 4 of 5)	3797.0	NM_010554	16175.0	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	-0.494967693971855	-0.480389705679892	0.425107012731745	-0.488820507329037	-0.494050435562953	-0.479322738827784	-0.120484631567534	-0.488176177399668	-1.7498170098003	0.517239202831954	1
Merged-chr17-71184035-3	chr17	71183933	71184133	+	863.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022882)	promoter-TSS (NM_022882)	55.0	NM_022882	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-33619064-3	chr8	33618952	33619152	+	965.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_178648)	TTS (NM_178648)	19431.0	NM_017374	19053.0	Mm.29301	NM_017374	ENSMUSG00000009630	Ppp2cb	AI115466|D8Ertd766e|PP2Ac	protein phosphatase 2 (formerly 2A), catalytic subunit, beta isoform	protein-coding	3.38093930603614	2.17862288251617	2.584366835491	2.17358950606364	1.9411205070828	1.29940013077507	1.26155281502854	2.52084230206862	-1.77441874928565	0.0690416584516263	0.39483404104033
Merged-chr4-16862037-2	chr4	16861937	16862137	+	791.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	697927.0	NR_045765	100415915.0	Mm.387180	NR_045765	ENSMUSG00000085112	A530072M11Rik	-	RIKEN cDNA gene A530072M11	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-137768880-2	chr5	137768780	137768980	+	645.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_029805)	TTS (NM_029805)	-10024.0	NM_001356989	69871.0	Mm.276058	NM_027242	ENSMUSG00000029725	Ppp1r35	2010007H12Rik|2010011D20Rik|AL024004	protein phosphatase 1, regulatory subunit 35	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-143594414-3	chr5	143594312	143594512	+	923.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28035.0	NM_011182	19159.0	Mm.281003	NM_011182	ENSMUSG00000018001	Cyth3	AI648983|ARNO3|CLM3|Grp1|Pscd3	cytohesin 3	protein-coding	1.38544454839487	2.69483349569887	1.22661426537393	2.17594901994771	2.57496401132867	3.2831740962161	1.23577683676776	2.79609057567059	1.32932537168823	0.19459279612949	0.67477582889064
Merged-chr2-158172784-2	chr2	158172670	158172870	+	764.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB-int|LTR|ERVL-MaLR	-19238.0	NR_036606	73399.0	Mm.416861	NR_036606	ENSMUSG00000078957	1700060C20Rik	-	RIKEN cDNA 1700060C20 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-22807522-4	chr2	22807426	22807626	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019456, intron 1 of 13)	intron (NM_019456, intron 1 of 13)	33199.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135187670-3	chr5	135187572	135187772	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011714, exon 1 of 19)	exon (NM_011714, exon 1 of 19)	349.0	NM_011714	22385.0	Mm.40331	NM_011714	ENSMUSG00000002748	Baz1b	C87820|WSTF|Wbscr9	bromodomain adjacent to zinc finger domain, 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-129591980-4	chr7	129591896	129592096	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172255, exon 1 of 29)	exon (NM_172255, exon 1 of 29)	133.0	NM_172255	207425.0	Mm.229323	NM_172255	ENSMUSG00000042055	Wdr11	2900055P10Rik|AW489876|Brwd2|mKIAA1351	WD repeat domain 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81633727-4	chr10	81633609	81633809	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027480, intron 2 of 19)	intron (NM_027480, intron 2 of 19)	5169.0	NM_027480	70615.0	Mm.304382	NM_027480	ENSMUSG00000054708	Ankrd24	4631433D01Rik|5730519E19Rik|D10Bur2e	ankyrin repeat domain 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-90689205-2	chr5	90689105	90689305	+	583.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48678.0	NM_001310656	73246.0	Mm.30172	NM_028478	ENSMUSG00000029370	Rassf6	1600016B17Rik	Ras association (RalGDS/AF-6) domain family member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-142765175-4	chr3	142765064	142765264	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145546)	promoter-TSS (NM_145546)	-83.0	NM_145546	229906.0	Mm.271756	NM_145546	ENSMUSG00000028271	Gtf2b	-	general transcription factor IIB	protein-coding	5.30709412873084	5.47057447385813	6.09261663868784	5.47163614998839	5.90829190440348	5.66256012241378	5.81702482660759	5.78186159881723	0.204263969938654	0.442725552543656	0.911647291190116
Merged-chr7-142982035-4	chr7	142981933	142982133	+	828.979187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-12769.0	NM_008554	17173.0	Mm.196417	NM_008554	ENSMUSG00000009248	Ascl2	2410083I15Rik|Mash2|bHLHa45	achaete-scute family bHLH transcription factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-69452517-1	chr18	69452417	69452617	+	607.0	f1_balb.idr	intron (NM_001361128, intron 3 of 19)	intron (NM_001361128, intron 3 of 19)	106357.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76606208-2	chr15	76606108	76606308	+	888.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361485, intron 1 of 36)	intron (NM_001361485, intron 1 of 36)	1383.0	NM_053193	94230.0	Mm.45141	NM_053193	ENSMUSG00000034022	Cpsf1	CPSF160	cleavage and polyadenylation specific factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-22519726-3	chr9	22519619	22519819	+	729.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360259, intron 5 of 22)	intron (NM_001360259, intron 5 of 22)	44004.0	NM_181316	319845.0	Mm.176725	NM_178415	ENSMUSG00000035919	Bbs9	E130103I17Rik	Bardet-Biedl syndrome 9 (human)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-94491718-2	chr3	94491618	94491818	+	593.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_110353, exon 12 of 12)	non-coding (NR_110353, exon 12 of 12)	7360.0	NR_151857	78784.0	Mm.44292	NM_172434	ENSMUSG00000028137	Celf3	4930415M08Rik|BRUNOL1|CAGH4|ERDA4|ETR-1|Tnrc4	CUGBP, Elav-like family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-43181664-4	chr5	43181569	43181769	+	972.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028417, intron 5 of 7)	intron (NR_028417, intron 5 of 7)	-51794.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-157285565-4	chr1	157285463	157285663	+	893.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177644, intron 3 of 17)	intron (NM_177644, intron 3 of 17)	-126789.0	NR_027984	69953.0	Mm.286863	NM_027274	ENSMUSG00000049881	2810025M15Rik	AI429618	RIKEN cDNA 2810025M15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-119006024-2	chr14	119005951	119006151	+	638.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081252, intron 34 of 38)	RMER12C|LTR|ERVK	68119.0	NM_008929	100037258.0	Mm.12616	NM_008929	ENSMUSG00000022136	Dnajc3	AA408985|AU067833|Dnajc3a|Dnajc3b|Prkri|mp58|p58|p58IPK	DnaJ heat shock protein family (Hsp40) member C3	protein-coding	1.14137584561408	1.91303308654534	1.22212706661611	1.89214187379844	1.14915197453484	1.01340788242425	1.97000942838867	2.24847210414022	0.352321737443799	0.768676050719705	0.998431161219273
Merged-chr12-69951261-3	chr12	69951165	69951365	+	794.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178628, intron 9 of 14)	Lx7|LINE|L1	-12144.0	NR_036607	100040999.0	Mm.394588	NR_036607	ENSMUSG00000079076	Gm3086	-	RuvB-like protein 1 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171057515-4	chr1	171057419	171057619	+	990.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356511, intron 3 of 4)	intron (NM_001356511, intron 3 of 4)	1875.0	NM_001356511	14131.0	Mm.22119	NM_010188	ENSMUSG00000059498	Fcgr3	CD16	Fc receptor, IgG, low affinity III	protein-coding	3.12276812755389	3.41174380858616	3.84356658057227	4.15799278472636	3.38705846904354	2.79366871050304	3.32211230097909	3.93335922031698	-0.401502786638378	0.477306964043054	0.927980290875356
Merged-chr1-156624410-4	chr1	156624308	156624508	+	848.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001136104, intron 3 of 12)	intron (NM_001136104, intron 3 of 12)	49931.0	NM_023141	30935.0	Mm.206737	NM_023141	ENSMUSG00000060519	Tor3a	Adir	torsin family 3, member A	protein-coding	2.04006883336426	2.5561281391929	2.67849068408603	1.37872961077711	2.39635695138334	3.05652325232654	2.48879984346069	2.29324997698848	0.71548272771762	0.40991854371934	0.89375545339923
Merged-chr19-9975105-4	chr19	9975018	9975218	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5482.0	NR_073181	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119942947-4	chr11	119942843	119943043	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_130862)	promoter-TSS (NM_130862)	-149.0	NM_001037754	108100.0	Mm.197534	NM_130862	ENSMUSG00000025372	Baiap2	IRSp53|R75030	brain-specific angiogenesis inhibitor 1-associated protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117078442-4	chr10	117078329	117078529	+	886.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177798, intron 7 of 9)	ORR1C1|LTR|ERVL-MaLR	-14577.0	NM_007636	12461.0	Mm.247788	NM_007636	ENSMUSG00000034024	Cct2	Cctb	chaperonin containing Tcp1, subunit 2 (beta)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-131091066-4	chr2	131090989	131091189	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4324.0	NM_011426	20612.0	Mm.1374	NM_011426	ENSMUSG00000027322	Siglec1	Cd169|Siglec-1|Sn	sialic acid binding Ig-like lectin 1, sialoadhesin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-23256741-4	chr1	23256645	23256845	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-15524.0	NR_029533	387225.0		NR_029533	ENSMUSG00000065405	Mir30a	Mirn30a|mir-30a|mmu-mir-30a	microRNA 30a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-56069100-4	chr19	56069001	56069201	+	851.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	173780.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-3136818-2	chr11	3136683	3136883	+	1000.0	f0_balb.idr|f1_balb.idr	intron (NM_030207, intron 23 of 32)	intron (NM_030207, intron 23 of 32)	12762.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-64374096-4	chr1	64374034	64374234	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-158670.0	NM_009952	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-44225654-2	chr5	44225554	44225754	+	890.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_173764, intron 1 of 13)	intron (NM_173764, intron 1 of 13)	952.0	NM_173764	231225.0	Mm.30688	NM_173764	ENSMUSG00000046985	Tapt1	4932414K18Rik	transmembrane anterior posterior transformation 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-6247683-2	chr13	6247583	6247783	+	778.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	AmnSINE1|SINE|Deu	-300474.0	NM_145131	69617.0	Mm.41933	NM_145131	ENSMUSG00000021193	Pitrm1	2310012C15Rik|AA410010|MP-1|MP1|Ntup1|PreP|mKIAA1104	pitrilysin metallepetidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129619107-4	chr4	129619012	129619212	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198026)	promoter-TSS (NM_198026)	-19.0	NM_198026	230767.0	Mm.441132	NM_198026	ENSMUSG00000040795	Iqcc	BC026978	IQ motif containing C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150824255-1	chr4	150824155	150824355	+	621.0	f0_balb.idr	Intergenic	Intergenic	-29541.0	NM_001356323	74155.0	Mm.318841	NM_133753	ENSMUSG00000028967	Errfi1	1300002F13Rik|AI788755|Mig-6|Mig6|RALT	ERBB receptor feedback inhibitor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-45592961-4	chr17	45592840	45593040	+	802.325012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022880)	promoter-TSS (NM_022880)	-547.0	NM_022880	63959.0	Mm.29744	NM_022880	ENSMUSG00000023942	Slc29a1	1200014D21Rik|AA407560|ENT1	solute carrier family 29 (nucleoside transporters), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135982491-2	chr5	135982390	135982590	+	984.4166869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_011776, intron 1 of 7)	intron (NM_011776, intron 1 of 7)	2385.0	NM_011776	22788.0	Mm.1381	NM_011776	ENSMUSG00000004948	Zp3	Zp-3	zona pellucida glycoprotein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-113917758-4	chr13	113917654	113917854	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172595, intron 1 of 4)	intron (NM_172595, intron 1 of 4)	123246.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-63846051-3	chr14	63845950	63846150	+	634.511108	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14262.0	NM_028228	72400.0	Mm.379214	NM_028228	ENSMUSG00000021958	Pinx1	2210403I16Rik|2610028A01Rik|67-11-3|AU024023|LPTS|LPTS1	PIN2/TERF1 interacting, telomerase inhibitor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-49051625-2	chr11	49051525	49051725	+	774.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173434).2	promoter-TSS (NM_173434).2	-383.0	NM_173434	245240.0	Mm.452996	NM_173434	ENSMUSG00000069892	9930111J21Rik2	9930111J21Rik|Irgb5	RIKEN cDNA 9930111J21 gene 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-117114807-1	chr5	117114707	117114907	+	1000.0	f1_c57bl6.idr	intron (NM_001122666, intron 1 of 12)	intron (NM_001122666, intron 1 of 12)	1186.0	NM_001122666	71954.0	Mm.34456	NM_178622	ENSMUSG00000066900	Suds3	2400003N08Rik|2410008L21Rik|AU067672|mSds3	suppressor of defective silencing 3 homolog (S. cerevisiae)	protein-coding	-0.790086549655557	-0.910746696281261	-0.611398817494093	-0.766231912229368	-0.922996873979645	-0.729257850459217	-0.917846143308693	-0.919974838991928	-1.65268596294065	0.542196645777607	1
Merged-chr17-47594856-2	chr17	47594756	47594956	+	728.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081636, exon 4 of 7)	exon (NM_001081636, exon 4 of 7)	1389.0	NM_007632	12445.0	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-120191104-3	chr6	120191002	120191202	+	833.022217	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016718, intron 1 of 3)	intron (NM_016718, intron 1 of 3)	-2721.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-88847528-3	chr18	88847417	88847617	+	811.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46690.0	NM_018821	54607.0	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-98761948-4	chr13	98761845	98762045	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172591, intron 11 of 25)	intron (NM_172591, intron 11 of 25)	53504.0	NM_172591	218503.0	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-47690059-4	chr8	47689959	47690159	+	963.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14900.0	NM_023503	69260.0	Mm.430733	NM_023503	ENSMUSG00000063049	Ing2	2810011M06Rik|Ing1l|Ing2b|P33ING2	inhibitor of growth family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-43723153-1	chr19	43723053	43723253	+	585.0	f1_c57bl6.idr	intron (NM_053103, intron 9 of 12)	intron (NM_053103, intron 9 of 12)	29847.0	NM_144874	226139.0	Mm.248237	NM_144874	ENSMUSG00000040018	Cox15	2900026G05Rik	cytochrome c oxidase assembly protein 15	protein-coding	1.49780394704421	2.51697703247756	3.89032249808421	3.1391482085844	1.24298954009712	3.21158999002036	2.44400823365404	2.20941844371552	-1.02567834629345	0.263350755539626	0.765056262703252
Merged-chr11-105420897-4	chr11	105420795	105420995	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039242, intron 4 of 5)	L2|LINE|L2	35840.0	NM_172568	632687.0	Mm.121570	NM_172568	ENSMUSG00000078627	March10	4933417C16Rik|AV039223|Rnf190	membrane-associated ring finger (C3HC4) 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-54734416-1	chr14	54734316	54734516	+	561.0	f1_c57bl6.idr	intron (NM_016972, intron 6 of 10)	intron (NM_016972, intron 6 of 10)	-22242.0	NM_207131	110794.0	Mm.236223	NM_207131	ENSMUSG00000052435	Cebpe	C/EBPe|C/EBPepsilon|CRP1|Gm294	CCAAT/enhancer binding protein (C/EBP), epsilon	protein-coding	0.435267963841046	-0.352881904902314	-0.357409263023352	-0.3609063077737	0.129059533787068	-0.351862170694137	-0.356410217932976	-0.360295121256715	-0.934864263136997	0.725073910931951	1
Merged-chr4-43578699-4	chr4	43578584	43578784	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172866)	promoter-TSS (NM_172866)	-51.0	NM_172866	242406.0	Mm.259311	NM_172866	ENSMUSG00000028468	Rgp1	1110029E03Rik|AI527196|F730001J03|mKIAA0258	RAB6A GEF compex partner 1	protein-coding	3.902775175744	3.95043944204485	4.80200848857343	3.98647026925223	3.7550276890443	4.64569390691141	3.68158240634214	4.06707562054348	-0.173016231442316	0.710052481645578	0.998431161219273
Merged-chr9-32926000-3	chr9	32925894	32926094	+	613.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131058, intron 1 of 3)	intron (NR_131058, intron 1 of 3)	2972.0	NR_131058	330917.0	Mm.488283	NR_131058		Gm27162	A430016B06	predicted gene 27162	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-122601824-3	chr14	122601733	122601933	+	749.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153443, intron 6 of 24)	intron (NR_153443, intron 6 of 24)	67505.0	NM_144844	110821.0	Mm.23876	NM_144844	ENSMUSG00000041650	Pcca	C79630	propionyl-Coenzyme A carboxylase, alpha polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46139765-2	chr8	46139665	46139865	+	555.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-15619.0	NM_207213	102141.0	Mm.267258	NM_207213	ENSMUSG00000038291	Snx25	AI661919|Gm1699|Gm173|Sbbi31	sorting nexin 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-92083083-4	chr5	92082993	92083193	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080797)	promoter-TSS (NM_001080797)	-176.0	NM_001080797	23881.0	Mm.290530	NM_011816	ENSMUSG00000029405	G3bp2	AA409541|E430034L04Rik|G3BP|mKIAA0660	GTPase activating protein (SH3 domain) binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-114752378-4	chr9	114752210	114752410	+	818.25	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	21107.0	NM_026036	67213.0	Mm.28858	NM_026036	ENSMUSG00000032434	Cmtm6	2810051A14Rik|AA536733|Cklfsf6	CKLF-like MARVEL transmembrane domain containing 6	protein-coding	-0.201547462035687	-0.186690595273191	-0.19155567709133	0.439387135638646	-0.0525587906037254	-0.185594187502839	-0.190482480568878	0.447207149693107	0.254887778193996	0.914744177822605	1
Merged-chr9-108262759-2	chr9	108262659	108262859	+	788.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001276486, intron 1 of 3)	intron (NM_001276486, intron 1 of 3)	1056.0	NM_001276493	13138.0	Mm.7524	NM_010017	ENSMUSG00000039952	Dag1	D9Wsu13e|DG|Dp427|Dp71	dystroglycan 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111171532-2	chr12	111171432	111171632	+	561.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286122, intron 1 of 9)	B1_Mur4|SINE|Alu	5162.0	NM_011632	22031.0	Mm.27431	NM_011632	ENSMUSG00000021277	Traf3	AI528849|CAP-1|CD40bp|CRAF1|LAP1|T-BAM|amn	TNF receptor-associated factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-151312681-4	chr1	151312594	151312794	+	978.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31792.0	NM_001359262	117198.0	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-25973294-4	chr8	25973192	25973392	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029884, intron 1 of 17)	intron (NM_029884, intron 1 of 17)	3452.0	NM_029884	52120.0	Mm.28326	NM_029884	ENSMUSG00000037260	Hgsnat	9430010M12Rik|AW208455|D8Ertd354e|Tmem76	heparan-alpha-glucosaminide N-acetyltransferase	protein-coding	6.1951351408922	6.76419460824773	6.6091293605315	6.06338104220203	4.87469577236689	5.64465267375172	5.87744682057187	4.48105611365973	-1.23353363455014	5.67713653643903e-05	0.0019461224046913
Merged-chr15-73648070-2	chr15	73647970	73648170	+	652.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-23326.0	NM_001033219	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-59208869-4	chr6	59208784	59208984	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081145)	promoter-TSS (NM_001081145)	14.0	NM_001081145	68140.0	Mm.25843	NM_001081145	ENSMUSG00000049232	Tigd2	3632410O17Rik	tigger transposable element derived 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72165045-4	chr6	72164960	72165160	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41863.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-102023871-2	chr13	102023771	102023971	+	947.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-255654.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-61967435-3	chr9	61967338	61967538	+	947.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028748, intron 5 of 7)	intron (NM_028748, intron 5 of 7)	-20639.0	NM_024245	71819.0	Mm.259374	NM_024245	ENSMUSG00000032254	Kif23	3110001D19Rik|C87313|CHO1|Knsl5|MKLP-1|MKLP1	kinesin family member 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-29171225-4	chr6	29171147	29171347	+	917.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001101443, exon 5 of 5)	exon (NM_001101443, exon 5 of 5)	-6523.0	NM_133925	68272.0	Mm.40802	NM_026650	ENSMUSG00000029701	Rbm28	2810480G15Rik|AI503051	RNA binding motif protein 28	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-116227335-2	chr6	116227235	116227435	+	846.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026585, intron 14 of 30)	intron (NM_026585, intron 14 of 30)	19302.0	NM_026585	28006.0	Mm.28524	NM_026585	ENSMUSG00000024104	Washc2	A130095H06|C530005J20Rik|D6Wsu116e|Fam21	WASH complex subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-72711272-4	chr1	72711164	72711364	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009084)	promoter-TSS (NM_009084)	4.0	NM_009084	19981.0	Mm.21529	NM_009084	ENSMUSG00000046330	Rpl37a	-	ribosomal protein L37a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-146111136-3	chr3	146111038	146111238	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3102.0	NM_172864	242253.0	Mm.235040	NM_172864	ENSMUSG00000043020	Wdr63	4931433A13Rik|IC140|Ida7	WD repeat domain 63	protein-coding	2.58788499164939	1.85421204185583	4.65165397282901	3.373102249541	4.26878546354113	5.24586148878186	4.07150202061732	4.84177575283086	1.52400531689504	0.133033189109237	0.570764692507331
Merged-chr8-95005958-2	chr8	95005858	95006058	+	597.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_018882, intron 5 of 13)	intron (NM_018882, intron 5 of 13)	-11734.0	NM_173036	54672.0	Mm.27995	NM_173036	ENSMUSG00000060470	Adgrg3	A030001G24Rik|AW214383|Gpr97|Pb1|Pb99	adhesion G protein-coupled receptor G3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-149309641-4	chr6	149309487	149309687	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001289662, exon 1 of 5)	5' UTR (NM_001289662, exon 1 of 5)	173.0	NM_001289662	67246.0	Mm.333515	NM_026054	ENSMUSG00000032712	2810474O19Rik	6720435I21Rik|AA536804|AU020969|GET|Kiaa1551	RIKEN cDNA 2810474O19 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-42407439-2	chr6	42407339	42407539	+	595.75	f1_balb.idr|f1_c57bl6.idr	TTS (NM_199159)	TTS (NM_199159)	1910.0	NM_199159	387512.0	Mm.377919	NM_199159	ENSMUSG00000056203	Tas2r135	Tas2r35|mt2r38	taste receptor, type 2, member 135	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167755632-2	chr2	167755532	167755732	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	64455.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-43297429-3	chr6	43297312	43297512	+	739.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12142.0	NM_130869	18291.0	Mm.17715	NM_130869	ENSMUSG00000029736	Nobox	OG2|Og2x	NOBOX oogenesis homeobox	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-35038509-4	chr9	35038415	35038615	+	993.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-78213.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89243793-2	chr3	89243693	89243893	+	601.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_183037, exon 3 of 10)	exon (NM_183037, exon 3 of 10)	1220.0	NR_121683	360213.0	Mm.331156	NM_183037	ENSMUSG00000042766	Trim46	TRIFIC	tripartite motif-containing 46	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-75837688-4	chr14	75837583	75837783	+	953.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	7281.0	NR_045294	100043189.0	Mm.426329	NR_045294		Gm4285	-	predicted gene 4285	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-123423547-3	chr4	123423440	123423640	+	767.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199137, intron 52 of 92)	intron (NM_001199137, intron 52 of 92)	-11629.0	NM_001167918	442834.0	Mm.483803	NM_001167918		D830031N03Rik	Kiaa0754|mKIAA0754	RIKEN cDNA D830031N03 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-74952233-4	chr9	74952118	74952318	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113283)	promoter-TSS (NM_001113283)	-662.0	NM_001359816	235493.0	Mm.208955	NM_153584	ENSMUSG00000034858	Fam214a	6330415I01Rik|AI553555|C130047D21Rik|Kiaa1370|mKIAA1370	family with sequence similarity 214, member A	protein-coding	4.81570154879957	4.4385151973432	5.00484528251484	4.18319726233002	3.10525441060972	4.07881456415721	3.86737713925039	4.02709051540445	-1.10670007810548	0.0119243356884852	0.123405560313782
Merged-chr10-77966217-2	chr10	77966117	77966317	+	897.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_138301, intron 3 of 33)	intron (NM_138301, intron 3 of 33)	3655.0	NM_138301	28240.0	Mm.276762	NM_138301	ENSMUSG00000009292	Trpm2	9830168K16Rik|C79133|LTRPC2|TRPC7|Trp7|Trrp7	transient receptor potential cation channel, subfamily M, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-25055596-2	chr2	25055496	25055696	+	565.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039386, intron 2 of 15)	intron (NM_001039386, intron 2 of 15)	1217.0	NM_001177655	56876.0	Mm.42956	NM_020276	ENSMUSG00000006476	Nsmf	Jacob|Nelf	NMDA receptor synaptonuclear signaling and neuronal migration factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-60875251-2	chr18	60875151	60875351	+	822.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26287.0	NM_001198984	21453.0	Mm.486251	NM_011552	ENSMUSG00000024613	Tcof1	AA408847|AW209012|treacle	treacle ribosome biogenesis factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-54955266-4	chr6	54955224	54955424	+	952.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172729, intron 1 of 11)	intron (NM_172729, intron 1 of 11)	16337.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-101593268-2	chr14	101593168	101593368	+	829.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081278, intron 1 of 18)	intron (NM_001081278, intron 1 of 18)	15923.0	NM_001081278	210789.0	Mm.320639	NM_173380	ENSMUSG00000033083	Tbc1d4	5930406J04Rik|A930035N22|AV295684|As160	TBC1 domain family, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95215758-2	chr3	95215658	95215858	+	611.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029885, intron 2 of 9)	RSINE1|SINE|B4	-1699.0	NR_108026	100504029.0	Mm.478537	NR_108026	ENSMUSG00000097167	Gm16740	-	predicted gene, 16740	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-106558727-3	chr7	106558641	106558841	+	643.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	85904.0	NM_001277179	434223.0	Mm.276443	NM_001277179		Gm1966	-	predicted gene 1966	protein-coding	1.76228638194817	2.3202599867045	1.19073222193979	2.07869284243832	1.88758203916154	1.46726458852297	1.92214178619876	2.1864680492087	-0.0436071360341309	0.96666419660837	0.998431161219273
Merged-chr3-22087940-3	chr3	22087843	22088043	+	721.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030732, intron 1 of 15)	intron (NM_030732, intron 1 of 15)	11291.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127642948-4	chr10	127642862	127643062	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009284)	promoter-TSS (NM_009284)	-24.0	NM_009284	20852.0	Mm.121721	NM_009284	ENSMUSG00000002147	Stat6	-	signal transducer and activator of transcription 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-64756536-4	chr16	64756468	64756668	+	999.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14371.0	NM_026273	67609.0	Mm.212157	NM_026273	ENSMUSG00000059920	4930453N24Rik	AI649104|din	RIKEN cDNA 4930453N24 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-35889715-1	chr16	35889615	35889815	+	876.5	f1_c57bl6.idr	Intergenic	LTRIS_Mus|LTR|ERV1	-18333.0	NM_001039530	547253.0	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-134005131-4	chr4	134005030	134005230	+	862.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_145833, exon 4 of 4)	3' UTR (NM_145833, exon 4 of 4)	-4266.0	NM_026144	67422.0	Mm.100290	NM_026144	ENSMUSG00000012117	Dhdds	3222401G21Rik|CIT|DS|HDS|W91638	dehydrodolichyl diphosphate synthase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-101766217-1	chr13	101766117	101766317	+	806.0	f0_balb.idr	intron (NM_001077495, intron 1 of 15)	intron (NM_001077495, intron 1 of 15)	2000.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-182284054-2	chr1	182283954	182284154	+	806.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-1253.0	NM_007853	13244.0	Mm.29648	NM_007853	ENSMUSG00000038633	Degs1	AA536663|Degs|Des1|Mdes	delta(4)-desaturase, sphingolipid 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-109537919-2	chr3	109537819	109538019	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_020505, intron 15 of 26)	intron (NM_020505, intron 15 of 26)	-36088.0	NM_146139	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-86471567-2	chr1	86471467	86471667	+	995.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	45238.0	NM_027966	71863.0	Mm.179627	NM_027966	ENSMUSG00000036574	Tex44	1700019O17Rik	testis expressed 44	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-48950195-7	chr2	48950073	48950273	+	904.285706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355296)	promoter-TSS (NM_001355296)	61.0	NM_001355296	26428.0	Mm.291059	NM_011958	ENSMUSG00000026761	Orc4	Orc4P|Orc4l|mMmORC4	origin recognition complex, subunit 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-104219869-3	chr3	104219746	104219946	+	852.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001159354, exon 1 of 21)	exon (NM_001159354, exon 1 of 21)	560.0	NM_133853	99470.0	Mm.264849	NM_133853	ENSMUSG00000052539	Magi3	4732496O19Rik|6530407C02Rik|AA407180|AI120132|mKIAA1634	membrane associated guanylate kinase, WW and PDZ domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-57230975-2	chr16	57230870	57231070	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_026254, intron 1 of 17)	intron (NM_026254, intron 1 of 17)	496.0	NM_026254	67581.0	Mm.257819	NM_026254	ENSMUSG00000022749	Tbc1d23	4930451A13Rik|AU015720|AU043671|AU043778|D030022P07Rik|W51689	TBC1 domain family, member 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-29095508-4	chr17	29095406	29095606	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007669, intron 1 of 2)	CpG	1737.0	NM_007669	12575.0	Mm.195663	NM_007669	ENSMUSG00000023067	Cdkn1a	CAP20|CDKI|CIP1|Cdkn1|P21|SDI1|Waf1|mda6|p21Cip1|p21WAF	cyclin-dependent kinase inhibitor 1A (P21)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-36016554-1	chr17	36016454	36016654	+	616.0	f0_balb.idr	intron (NM_008207, intron 2 of 5)	intron (NM_008207, intron 2 of 5)	4006.0	NM_008207	15042.0	Mm.439654	NM_008207	ENSMUSG00000053835	H2-T24	H-2T24	histocompatibility 2, T region locus 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-55910217-1	chr7	55910117	55910317	+	647.0	f0_balb.idr	intron (NM_011370, intron 22 of 30)	L1MC4a|LINE|L1	52276.0	NM_001256133	93790.0	Mm.37249	NM_023647	ENSMUSG00000030452	Nipa2	2600017P10Rik|3830408P04Rik|AB041581	non imprinted in Prader-Willi/Angelman syndrome 2 homolog (human)	protein-coding	2.1187360604514	2.50872788912561	2.72313271789692	1.95388177735009	1.28681623841789	2.52763660499712	2.98284769226726	2.11430088504009	0.036464012399181	0.968427844260471	0.998431161219273
Merged-chr3-149461827-4	chr3	149461711	149461911	+	925.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	187074.0	NR_040591	381482.0	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97850754-3	chr11	97850663	97850863	+	630.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9983.0	NM_001080935	68127.0	Mm.110270	NM_001080935	ENSMUSG00000050538	B230217C12Rik	AI840637	RIKEN cDNA B230217C12 gene	protein-coding	0.8964154470521	0.897069276041924	0.991608661329664	0.833275023508999	0.515694604938025	0.73974564211283	1.22096610781481	0.525724230378903	-0.591810981971281	0.705484223655339	1
Merged-chr2-27311802-4	chr2	27311718	27311918	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_133905, intron 3 of 29)	MIR3|SINE|MIR	-64515.0	NM_138665	192166.0	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-67342273-2	chr15	67342173	67342373	+	622.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045140, intron 7 of 8)	intron (NR_045140, intron 7 of 8)	115504.0	NR_045140	69334.0	Mm.63770	NR_045140	ENSMUSG00000102069	1700012I11Rik	-	RIKEN cDNA 1700012I11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124424882-4	chr5	124424790	124424990	+	941.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081203, intron 1 of 31)	CpG	712.0	NM_001359979	243272.0	Mm.23879	NM_145631	ENSMUSG00000038095	Sbno1	9330180L10Rik|AI849128|AW557836|BC021875|Sbno|mSno1|sno	strawberry notch 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-172215188-2	chr1	172215101	172215301	+	623.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009813, intron 5 of 10)	intron (NM_009813, intron 5 of 10)	4694.0	NM_009813	12372.0	Mm.12829	NM_009813	ENSMUSG00000007122	Casq1	CSQ|CSQ-1|CSQ1|sCSQ	calsequestrin 1	protein-coding	0.395328015155162	0.128762472182524	1.09782073902649	0.116416602142137	0.40252088982914	0.130323847208522	0.479178416742452	0.117360771654544	-1.37779720132472	0.486565249759669	1
Merged-chr7-137436352-1	chr7	137436252	137436452	+	880.0	f1_balb.idr	Intergenic	ORR1A2|LTR|ERVL-MaLR	-1221.0	NM_001348093	30926.0	Mm.267692	NM_023140	ENSMUSG00000031068	Glrx3	PICOT|Txnl2	glutaredoxin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-101958299-4	chr12	101958189	101958389	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001167914)	promoter-TSS (NM_001167914)	-46.0	NM_001167914	110616.0	Mm.271914	NM_029705	ENSMUSG00000021189	Atxn3	2210008M02Rik|AI463012|AI647473|ATX3|MJD1|Mjd|Sca3|ataxin-3	ataxin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-16855007-3	chr16	16854877	16855077	+	716.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9008.0	NM_001190325	16136.0	Mm.184441	NM_001190325	ENSMUSG00000075370	Igll1	BB139905|Igl-5|Igll|Lambda5	immunoglobulin lambda-like polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-43204879-1	chr6	43204779	43204979	+	559.0	f1_balb.idr	Intergenic	L1_Mus2|LINE|L1	3233.0	NM_146653	258647.0	Mm.377612	NM_146653	ENSMUSG00000048693	Olfr435	MOR261-5	olfactory receptor 435	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-73234182-4	chr8	73234085	73234285	+	987.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010687, intron 1 of 14)	intron (NM_010687, intron 1 of 14)	119355.0	NM_001317391	16795.0	Mm.324371	NM_010687	ENSMUSG00000004383	Large1	BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd	LARGE xylosyl- and glucuronyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-29303926-4	chr7	29303821	29304021	+	868.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013874)	promoter-TSS (NM_013874)	-84.0	NM_013874	29861.0	Mm.101885	NM_013874	ENSMUSG00000030584	Dpf1	Neud4	D4, zinc and double PHD fingers family 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35244372-3	chr17	35244334	35244534	+	793.711121	f1_balb.idr|f1_c57bl6.idr	TTS (NR_105941)	TTS (NR_105941)	359.0	NR_105941	102465589.0		NR_105941	ENSMUSG00000098499	Mir6975	Gm27693|mmu-mir-6975	microRNA 6975	ncRNA	-1.06997269762433	-1.30473905204845	-1.3145270772132	-1.32256725251374	-1.06385251204029	-1.30261794616352	-1.3123112828633	-1.32112806497905	0.0394047164033882	0.991001358494878	1
Merged-chr17-34074109-3	chr17	34073990	34074190	+	650.777771	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18289.0	NM_008206	15001.0	Mm.116	NM_008206	ENSMUSG00000024334	H2-Oa	H-2Oa	histocompatibility 2, O region alpha locus	protein-coding	1.04178229760026	1.35445576500915	1.29366660473767	0.576870086033159	1.93608497521005	0.60562712487826	0.591331445073447	0.578856151515557	0.0508042412112878	0.975024706725793	0.998431161219273
Merged-chr6-57749312-3	chr6	57749274	57749474	+	809.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B2-int|LTR|ERVL-MaLR	46919.0	NM_133737	71835.0	Mm.274904	NM_133737	ENSMUSG00000062190	Lancl2	1700003F10Rik	LanC (bacterial lantibiotic synthetase component C)-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36612713-4	chr1	36612598	36612798	+	938.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201365, intron 6 of 9)	intron (NM_201365, intron 6 of 9)	-19366.0	NM_027957	381337.0	Mm.17413	NM_027957	ENSMUSG00000046337	Fam178b	1700024G10Rik|Gm990	family with sequence similarity 178, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-43872457-1	chr5	43872357	43872557	+	741.0	f1_c57bl6.idr	intron (NM_007646, intron 1 of 7)	intron (NM_007646, intron 1 of 7)	3648.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	2.0537203912371	2.00815487145544	1.50937729461261	1.28829460501225	2.40994326379753	1.36509334953188	1.95247843575526	1.07431172419647	0.188596007771563	0.86834426080859	0.998431161219273
Merged-chr2-109890845-4	chr2	109890758	109890958	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011699)	promoter-TSS (NM_011699)	-20.0	NM_011699	22343.0	Mm.235300	NM_011699	ENSMUSG00000027162	Lin7c	9130007B12Rik|AI303698|AU019331|AW125731|D2Ertd520e|LIN-7-C|LIN-7C|MALS-3|Veli3	lin-7 homolog C (C. elegans)	protein-coding	5.03872633392573	5.23146841738993	5.54072051153558	5.48652055750393	5.42706172513531	4.54273722947395	5.57666421408625	4.72793193375943	-0.222697857710527	0.498541450248535	0.937147532914443
Merged-chr14-46976229-1	chr14	46976129	46976329	+	666.0	f0_balb.idr	intron (NM_001037221, intron 2 of 12)	intron (NM_001037221, intron 2 of 12)	-21301.0	NR_105813	102465206.0		NR_105813	ENSMUSG00000099036	Mir378c	Gm27930|mmu-mir-378c	microRNA 378c	ncRNA	1.88705003253835	1.93954859400948	3.48483663501815	3.49180145628797	1.90475470999359	2.75693706880033	1.35709526046943	2.67752723348046	-1.20052144297472	0.183477753397367	0.658172040640305
Merged-chr4-3255258-1	chr4	3255158	3255358	+	541.0	f1_balb.idr	Intergenic	MMERVK10C-int|LTR|ERVK	-69953.0	NM_001167535	100312471.0	Mm.377218	NM_001167535	ENSMUSG00000115466	Vmn1r3	Gm11778	vomeronasal 1 receptor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-34549503-4	chr14	34549392	34549592	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039071, intron 8 of 12)	CpG	-26691.0	NM_030062	78243.0	Mm.117483	NM_030062	ENSMUSG00000021797	9230112D13Rik	-	RIKEN cDNA 9230112D13 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-31114451-3	chr6	31114401	31114601	+	943.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110471, intron 3 of 3)	intron (NR_110471, intron 3 of 3)	-51408.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-79527098-4	chr11	79527002	79527202	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001033711, exon 2 of 2)	3' UTR (NM_001033711, exon 2 of 2)	-3340.0	NM_001077496	216984.0	Mm.439665	NM_001077496	ENSMUSG00000093938	Evi2b	Evi-2|Evi2	ecotropic viral integration site 2b	protein-coding	5.21090508273655	5.90108039337056	4.57395166990911	5.19827661202774	4.8758297350043	5.57861969088811	4.24543902103399	5.12740591622882	-0.309134831423906	0.408090128399044	0.892068266828325
Merged-chr7-128728904-4	chr7	128728802	128729002	+	915.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145955, intron 1 of 15)	L1MD|LINE|L1	11527.0	NM_145955	210711.0	Mm.58882	NM_145955	ENSMUSG00000048170	Mcmbp	1110007A13Rik|AU017382|BC025641|MCM-BP	minichromosome maintenance complex binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-78199646-3	chr16	78199546	78199746	+	732.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	55808.0	NR_045698	100503619.0	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-140991350-2	chr4	140991250	140991450	+	549.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164366, intron 1 of 28)	intron (NM_001164366, intron 1 of 28)	4477.0	NM_001164366	74772.0	Mm.205625	NM_029097	ENSMUSG00000036622	Atp13a2	1110012E06Rik|AA589443	ATPase type 13A2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-6515092-4	chr18	6515000	6515200	+	799.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007935, intron 1 of 13)	intron (NM_007935, intron 1 of 13)	1008.0	NM_007935	13831.0	Mm.312133	NM_007935	ENSMUSG00000024240	Epc1	2400007E14Rik|5730566F07Rik|A930032N02Rik|mir-1893	enhancer of polycomb homolog 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-65491762-1	chr18	65491662	65491862	+	562.0	f1_c57bl6.idr	intron (NR_105742, intron 3 of 6)	B4A|SINE|B4	60765.0	NM_172833	240354.0	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	-0.321003765903533	-0.859787231100318	-0.865505697605698	-0.867720313675353	-0.870840978468054	-0.857095856682429	-0.864871666080143	-0.563772805396373	-0.973016328620917	0.753385479874591	1
Merged-chr9-21167831-4	chr9	21167704	21167904	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183408, intron 1 of 14)	intron (NM_183408, intron 1 of 14)	2090.0	NM_183408	18577.0	Mm.191749	NM_019798	ENSMUSG00000032177	Pde4a	D9Ertd60e|Dpde2	phosphodiesterase 4A, cAMP specific	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-36938301-2	chr11	36938201	36938401	+	925.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_011856, intron 1 of 28)	intron (NM_011856, intron 1 of 28)	5940.0	NM_001290702	23964.0	Mm.439889	NM_011856	ENSMUSG00000049336	Tenm2	Odz2|Odz3|Ten-2|Ten-m2	teneurin transmembrane protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-82750281-1	chr6	82750181	82750381	+	695.0	f1_c57bl6.idr	intron (NM_013820, intron 2 of 17)	B2_Mm2|SINE|B2	24173.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	2.43599598479997	2.50009680964835	0.867635729776011	0.84698566897829	1.77960200169218	0.898982968036169	0.873403841552176	1.77082853172506	-1.3483670772684	0.552955335292388	0.959564390599126
Merged-chr3-79103957-2	chr3	79103857	79104057	+	923.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001099624, intron 3 of 23)	intron (NM_001099624, intron 3 of 23)	40930.0	NM_001310536	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	0.167595787292656	0.184845177006521	0.179181535064362	0.689382926671368	0.537828437363662	0.534063176991656	0.180429628446987	0.696180995931567	1.19519816832547	0.551693085782394	1
Merged-chr11-70716265-2	chr11	70716165	70716365	+	614.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153103, intron 16 of 22)	intron (NM_153103, intron 16 of 22)	10275.0	NR_105890	102465557.0		NR_105890	ENSMUSG00000105932	Mir6925	mmu-mir-6925	microRNA 6925	ncRNA	0.414217526129888	0.167643824588997	0.161647902525527	0.782236916698769	0.420922354671656	0.168995089072347	0.162970564662346	0.790075924285609	0.032087056091868	0.987178062816809	1
Merged-chr5-21412259-4	chr5	21412170	21412370	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029195, intron 1 of 18)	intron (NM_029195, intron 1 of 18)	12407.0	NM_029195	75172.0	Mm.426695	NM_029195	ENSMUSG00000064280	Ccdc146	4930528G09Rik|mKIAA1505	coiled-coil domain containing 146	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72159947-4	chr6	72159852	72160052	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36755.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-160360154-2	chr2	160360054	160360254	+	892.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6911.0	NM_010658	16658.0	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129081809-4	chr4	129081709	129081909	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029219, intron 7 of 8)	intron (NM_029219, intron 7 of 8)	23538.0	NM_029219	75234.0	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-27429919-4	chr19	27429826	27430026	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_131940)	promoter-TSS (NR_131940)	-18.0	NR_131940	52874.0	Mm.261027	NM_177474	ENSMUSG00000041360	Pum3	1110069H02Rik|AA675048|D19Bwg1357e	pumilio RNA-binding family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-66385998-1	chr7	66385898	66386098	+	571.5	f0_c57.idr	intron (NM_146191, intron 1 of 33)	Lx7|LINE|L1	2343.0	NM_146191	233328.0	Mm.33284	NM_146191	ENSMUSG00000015133	Lrrk1	AW319595|C230002E15Rik|D130026O16Rik|mKIAA1790	leucine-rich repeat kinase 1	protein-coding	0.786394634843649	1.84049286314884	1.9552174301021	1.20297552523432	0.789950088716317	0.844899871322669	1.41108130343166	1.71849447172282	-0.928166167246917	0.507160228111613	0.943006780176123
Merged-chr11-74896187-2	chr11	74896087	74896287	+	924.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_197943, intron 1 of 22)	intron (NM_197943, intron 1 of 22)	893.0	NM_197943	97761.0	Mm.245894	NM_197943	ENSMUSG00000038351	Sgsm2	D630003G22Rik|R74628|Rutbc1|mKIAA0397	small G protein signaling modulator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-13755237-2	chr16	13755137	13755337	+	771.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001357954, exon 1 of 1)	exon (NM_001357954, exon 1 of 1)	673.0	NM_001357954	432999.0	Mm.60430	NM_001357954		A930007A09Rik	-	RIKEN cDNA A930007A09 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-99373304-2	chr5	99373204	99373404	+	872.474976	f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-120377.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166656353-4	chr2	166656241	166656441	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	57491.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-42016664-2	chr19	42016532	42016732	+	637.400024	f1_balb.idr|f1_c57bl6.idr	intron (NM_145500, intron 1 of 2)	PB1D10|SINE|Alu	-19406.0	NM_020033	56642.0	Mm.143737	NM_020033	ENSMUSG00000025172	Ankrd2	Arpp|mArpp	ankyrin repeat domain 2 (stretch responsive muscle)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-13671920-4	chr16	13671831	13672031	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025653)	promoter-TSS (NM_025653)	73.0	NM_025653	67118.0	Mm.223689	NM_025653	ENSMUSG00000022684	Bfar	3010001A07Rik|3110001I22Rik|AI666707|AW107665|Bar|Rnf47	bifunctional apoptosis regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-130024412-4	chr5	130024318	130024518	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133768)	promoter-TSS (NM_133768)	-37.0	NM_133768	109900.0	Mm.23869	NM_133768	ENSMUSG00000025533	Asl	2510006M18Rik|ASAL	argininosuccinate lyase	protein-coding	5.69976270139547	5.53411824901428	5.51934142788608	5.11616930772503	5.21434330858514	5.40552848665903	5.3797423264929	5.51661111501143	-0.119524426165012	0.665828751521343	0.992380258859526
Merged-chr15-31350810-2	chr15	31350710	31350910	+	559.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027496, intron 1 of 3)	intron (NM_027496, intron 1 of 3)	16949.0	NM_001357923	67434.0	Mm.102470	NM_026153	ENSMUSG00000022237	Ankrd33b	0610012A05Rik|3021401C12Rik|5730557B15Rik	ankyrin repeat domain 33B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-4237191-4	chr12	4237102	4237302	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001204912, exon 2 of 2)	3' UTR (NM_001204912, exon 2 of 2)	3175.0	NM_001204912	69709.0	Mm.250552	NM_001204912	ENSMUSG00000096199	Ptrhd1	2410017P09Rik	peptidyl-tRNA hydrolase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5689684-4	chr19	5689616	5689816	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144868)	promoter-TSS (NM_144868)	585.0	NM_022012	26403.0	Mm.185026	NM_022012	ENSMUSG00000004054	Map3k11	2610017K16Rik|Mlk3|PTK1|SPRK	mitogen-activated protein kinase kinase kinase 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-59799432-2	chr13	59799332	59799532	+	915.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153538, intron 13 of 27)	RSINE1|SINE|B4	23715.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-18629908-6	chr16	18629756	18629956	+	908.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_213614)	promoter-TSS (NM_213614)	82.0	NM_213614	18951.0	Mm.20365	NM_213614	ENSMUSG00000072214	Sept5	Cdcrel-1|Cdcrel1|Pnutl1	septin 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-4920033-1	chr2	4919933	4920133	+	747.0	f1_balb.idr	intron (NM_010726, intron 1 of 8)	intron (NM_010726, intron 1 of 8)	1037.0	NM_010726	16922.0	Mm.391704	NM_010726	ENSMUSG00000026664	Phyh	AI256161|AI265699|Lnap1|PAHX	phytanoyl-CoA hydroxylase	protein-coding	2.01584791744904	0.942123903093519	1.63224672890308	1.45041934122342	2.03472753525638	1.70944098790842	0.927797721333515	0.91168328240438	-0.205947062674106	0.877672186889285	0.998431161219273
Merged-chr11-50364903-6	chr11	50364947	50365147	+	812.944458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7168.0	NR_030529	100049547.0		NR_030529	ENSMUSG00000076450	Mir804	Mirn804|mmu-mir-804	microRNA 804	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64958591-2	chr5	64958491	64958691	+	569.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359180, intron 1 of 1)	Lx8b|LINE|L1	1505.0	NM_001359180	21899.0	Mm.42146	NM_011604	ENSMUSG00000051498	Tlr6	-	toll-like receptor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-50134877-1	chr18	50134777	50134977	+	662.0	f1_c57bl6.idr	intron (NM_008292, intron 2 of 23)	intron (NM_008292, intron 2 of 23)	6676.0	NM_008292	15488.0	Mm.277857	NM_008292	ENSMUSG00000024507	Hsd17b4	17-beta-HSD|17[b]-HSD|DBP|MFE-2|MFP2|MPF-2|Mfp-2|perMFE-2	hydroxysteroid (17-beta) dehydrogenase 4	protein-coding	2.92707616618201	3.54617861528869	4.00364462902999	3.59247944402945	1.70270305807593	3.0041051061583	2.30967513525004	2.55082364555187	-1.91315133635701	0.00543914489043141	0.0711914840677048
Merged-chr19-46186727-3	chr19	46186629	46186829	+	967.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178930, intron 3 of 39)	intron (NM_178930, intron 3 of 39)	34171.0	NM_178930	107338.0	Mm.271620	NM_178930	ENSMUSG00000025224	Gbf1	1700083E03Rik|AI035702|AW049900|mKIAA0248	golgi-specific brefeldin A-resistance factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-55838632-4	chr4	55838527	55838727	+	753.887512	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-306152.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91623243-4	chr16	91623147	91623347	+	882.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357351, intron 19 of 21)	intron (NM_001357351, intron 19 of 21)	-4248.0	NM_138664	246738.0	Mm.101927	NM_138664	ENSMUSG00000039763	Dnajc28	BC020175|ORF28	DnaJ heat shock protein family (Hsp40) member C28	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-54546159-2	chr12	54546059	54546259	+	675.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	99853.0	NR_035439	100316682.0		NR_035439	ENSMUSG00000106344	Mir1892	Mirn1892|mir-1892|mmu-mir-1892	microRNA 1892	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-21076027-4	chr14	21075926	21076126	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001243041)	promoter-TSS (NM_001243041)	-126.0	NM_001243041	11534.0	Mm.188734	NM_134079	ENSMUSG00000039197	Adk	2310026J05Rik|5033405D03Rik|AI255373|AI987814|Ak	adenosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-12010010-2	chr4	12009910	12010110	+	744.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43436.0	NR_040577	100503636.0	Mm.209078	NR_040577		1700123M08Rik	1600025K15Rik	RIKEN cDNA 1700123M08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-79667036-2	chr10	79666936	79667136	+	887.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013591, intron 4 of 4)	ID_B1|SINE|B4	-2374.0	NM_148934	110012.0	Mm.22623	NM_148934	ENSMUSG00000020308	Tpgs1	AV005629|Gm16517|Gtrgeo22|PGs1	tubulin polyglutamylase complex subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-76152768-3	chr18	76152666	76152866	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17786.0	NR_105776	102465184.0		NR_105776	ENSMUSG00000098276	Mir6358	Gm27830|mmu-mir-6358	microRNA 6358	ncRNA	3.54926404816303	4.08794163207076	4.0096435792484	4.09066875465412	1.68303245507203	3.48986592216655	2.11965104066745	1.79590207809978	-2.35739238395979	0.000640727698192511	0.0137253213616053
Merged-chr2-75832222-4	chr2	75832109	75832309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172666)	promoter-TSS (NM_172666)	32.0	NM_172666	228061.0	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	4.86762454610838	4.63443760108298	4.24791300720555	4.61083420922566	5.13005749205065	5.44038635262011	5.28761779687615	4.53958876115962	0.629772289068699	0.0716608622016396	0.403516467956962
Merged-chr5-137302713-2	chr5	137302577	137302777	+	601.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359602, intron 3 of 19)	intron (NM_001359602, intron 3 of 19)	4997.0	NM_031405	83701.0	Mm.387734	NM_031405	ENSMUSG00000037364	Srrt	2810019G02Rik|ASR2A|ASR2B|ASR2C|ASR2D|Ars2|Asr2	serrate RNA effector molecule homolog (Arabidopsis)	protein-coding	-1.3681463318974	-1.33624156493372	-1.34650167276047	-0.80669348975676	-1.36769697821496	-1.33401815676661	-1.34417900924365	-1.3534210303531	-2.3580830592467	0.49586638340111	1
Merged-chr17-50392867-2	chr17	50392787	50392987	+	670.5	f0_c57.idr|f1_balb.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-99267.0	NM_001277863	13164.0	Mm.280641	NM_010021	ENSMUSG00000010592	Dazl	Daz-like|Dazh|Dazl1|Dazla|Tpx-2|Tpx2	deleted in azoospermia-like	protein-coding	2.02873894499355	2.11239424158579	2.19443978730564	2.48040038783714	1.90812604030208	2.4242843230823	2.34467031794157	3.09038626554458	0.692880479410839	0.407389094084558	0.891845785649541
Merged-chr19-5685533-2	chr19	5685433	5685633	+	810.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_144868, exon 6 of 35)	exon (NM_144868, exon 6 of 35)	3375.0	NM_144868	104401.0	Mm.329650	NM_144868	ENSMUSG00000054874	Pcnx3	Pcnxl3|mKIAA4073	pecanex homolog 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-87020953-4	chr10	87020839	87021039	+	828.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12997.0	NM_138673	192188.0	Mm.279611	NM_138673	ENSMUSG00000035459	Stab2	FEEL-2|FELL|MFEEL-2|STAB-2	stabilin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-65484127-4	chr5	65484010	65484210	+	969.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133697, intron 1 of 4)	MLT-int|LTR|ERVL-MaLR	8725.0	NM_133697	68552.0	Mm.10709	NM_133697	ENSMUSG00000037822	Smim14	1110003E01Rik|1700127H04Rik|5430439C17Rik|MAd4	small integral membrane protein 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-117195672-4	chr2	117195534	117195734	+	735.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10507.0	NR_030440	732489.0		NR_030440	ENSMUSG00000076376	Mir674	Mirn674|mir-674|mmu-mir-674	microRNA 674	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139547184-2	chr5	139547084	139547284	+	590.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_013702, exon 3 of 3)	exon (NM_013702, exon 3 of 3)	3286.0	NM_013702	22255.0	Mm.42190	NM_013702	ENSMUSG00000029546	Uncx	Chx4|Uncx4.1	UNC homeobox	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-103240338-4	chr15	103240249	103240449	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_002885)	promoter-TSS (NR_002885)	-48.0	NR_104427	15382.0	Mm.237064	NM_010447	ENSMUSG00000046434	Hnrnpa1	HDP-1|Hdp|Hnrpa1|hnRNP A1|hnrnp-A1	heterogeneous nuclear ribonucleoprotein A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-128711490-2	chr1	128711390	128711590	+	873.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-119191.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-60264418-1	chr5	60264318	60264518	+	591.0	f1_balb.idr	Intergenic	RLTR13D6|LTR|ERVK	-278416.0	NR_040682	71057.0	Mm.50817	NR_040682	ENSMUSG00000106013	4933402J10Rik	-	RIKEN cDNA 4933402J10 gene	ncRNA	0.156573391658975	-0.184101370113962	-0.188290400240844	-0.191510344691445	0.258430750204968	-0.183154667843862	-0.1873679921311	0.319366639440932	1.5323917432441	0.527581124792015	1
Merged-chr1-193860418-2	chr1	193860318	193860518	+	986.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR85c|LTR|Gypsy?	-352888.0	NR_029592	387201.0		NR_029592	ENSMUSG00000065533	Mir205	Mirn205|mir-205|mmu-mir-205	microRNA 205	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-63468050-2	chr17	63467950	63468150	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_015794, intron 4 of 8)	intron (NM_015794, intron 4 of 8)	32530.0	NM_015794	50758.0	Mm.136366	NM_015794	ENSMUSG00000023965	Fbxl17	6330576B01Rik|AI452053|BB073797|C130023C01Rik|Fbx13|Fbxo13	F-box and leucine-rich repeat protein 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-73422066-2	chr15	73421966	73422166	+	588.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358046, intron 1 of 34)	intron (NM_001358046, intron 1 of 34)	1125.0	NM_007982	14083.0	Mm.254494	NM_007982	ENSMUSG00000022607	Ptk2	FADK 1|FAK|FRNK|Fadk|p125FAK	PTK2 protein tyrosine kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-64057945-1	chr15	64057845	64058045	+	626.0	f1_c57bl6.idr	intron (NM_001360037, intron 1 of 11)	intron (NM_001360037, intron 1 of 11)	1819.0	NM_001360038	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47439620-2	chr17	47439520	47439720	+	681.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_145489, intron 1 of 4)	intron (NM_145489, intron 1 of 4)	-2245.0	NM_029296	75462.0	Mm.46129	NM_029296	ENSMUSG00000047150	1700001C19Rik	-	RIKEN cDNA 1700001C19 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-117040326-2	chr2	117040226	117040426	+	780.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-80745.0	NM_001277256	114715.0	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-131915574-2	chr4	131915474	131915674	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_102394, intron 1 of 2)	intron (NR_102394, intron 1 of 2)	4455.0	NR_102394	545681.0	Mm.2478	NR_102393	ENSMUSG00000085667	Gm12992	-	predicted gene 12992	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-59787666-3	chr11	59787576	59787776	+	900.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_110894)	promoter-TSS (NR_110894)	-19.0	NM_001290283	194908.0	Mm.344651	NM_183139	ENSMUSG00000043648	Pld6	4933433K01Rik|Gm10|Zuc|mZuc|mitoPLD	phospholipase D family, member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-22148304-2	chr8	22148204	22148404	+	550.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011848, intron 9 of 15)	intron (NM_011848, intron 9 of 15)	14190.0	NM_001162947	23954.0	Mm.41413	NM_011848	ENSMUSG00000031478	Nek3	-	NIMA (never in mitosis gene a)-related expressed kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-58509240-4	chr16	58509126	58509326	+	856.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357433, intron 1 of 10)	intron (NM_001357433, intron 1 of 10)	14200.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-84135560-4	chr3	84135477	84135677	+	845.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029797, intron 3 of 7)	intron (NM_029797, intron 3 of 7)	20209.0	NM_029797	76915.0	Mm.274829	NM_029797	ENSMUSG00000033752	Mnd1	2610034E18Rik|AI591601|Gaj	meiotic nuclear divisions 1	protein-coding	0.65274941736959	0.205149401640597	0.520352300848354	0.194421041971289	0.332054178837425	0.206514447513035	0.378324187028087	0.910938498908681	0.531884909587549	0.776703984354974	1
Merged-chr11-3921692-4	chr11	3921566	3921766	+	803.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001130458, intron 8 of 9)	intron (NM_001130458, intron 8 of 9)	-7002.0	NM_153142	103710.0	Mm.171514	NM_153142	ENSMUSG00000048807	Slc35e4	A330108F03Rik|AI414849|AI536442	solute carrier family 35, member E4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-68541860-4	chr10	68541782	68541982	+	884.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028491)	promoter-TSS (NM_028491)	-7.0	NM_028491	73287.0	Mm.141830	NM_028491	ENSMUSG00000019945	Cabcoco1	1700040L02Rik	ciliary associated calcium binding coiled-coil 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-3709996-4	chr7	3709887	3710087	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5946.0	NM_029767	76846.0	Mm.13944	NM_029767	ENSMUSG00000006333	Rps9	3010033P07Rik|AL022771|AL022885	ribosomal protein S9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28447238-2	chr7	28447138	28447338	+	627.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_022024)	TTS (NM_022024)	-4747.0	NM_030562	80749.0	Mm.483073	NM_030562	ENSMUSG00000030600	Lrfn1	BC004018|SALM2|Semo1	leucine rich repeat and fibronectin type III domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-40430073-2	chr12	40429973	40430173	+	740.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172575, intron 1 of 12)	intron (NM_172575, intron 1 of 12)	15717.0	NM_172575	246196.0	Mm.26852	NM_172575	ENSMUSG00000055917	Zfp277	2410017E24Rik|NIRF4	zinc finger protein 277	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70682445-2	chr14	70682345	70682545	+	846.400024	f1_balb.idr|f1_c57bl6.idr	intron (NM_023045, intron 17 of 27)	intron (NM_023045, intron 17 of 27)	25590.0	NM_001359888	65246.0	Mm.152987	NM_023045	ENSMUSG00000022100	Xpo7	4930506C02Rik|BB164534|Ranbp16|exp7	exportin 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106735937-2	chr11	106735837	106736037	+	626.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-15289.0	NM_001271375	380732.0	Mm.343952	NM_001033435	ENSMUSG00000040528	Milr1	Allergin-1|Gm885|Mca32	mast cell immunoglobulin like receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-84906665-2	chr3	84906565	84906765	+	831.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177774, intron 3 of 12)	Lx7|LINE|L1	42520.0	NM_001177774	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-116277213-2	chr3	116277113	116277313	+	812.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001173553, intron 13 of 13)	intron (NM_001173553, intron 13 of 13)	-23729.0	NM_022427	64378.0	Mm.40025	NM_022427	ENSMUSG00000068696	Gpr88	AW061286|Strg	G-protein coupled receptor 88	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30445841-2	chr2	30445741	30445941	+	585.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_138748, intron 9 of 9)	intron (NM_138748, intron 9 of 9)	28358.0	NM_030244	72500.0	Mm.295464	NM_030244	ENSMUSG00000089762	Ier5l	2610524G09Rik	immediate early response 5-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-40975308-4	chr14	40975160	40975360	+	945.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8364.0	NM_145928	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-127085649-2	chr2	127085549	127085749	+	734.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026678, intron 3 of 7)	intron (NM_026678, intron 3 of 7)	14992.0	NM_026678	109778.0	Mm.22028	NM_026678	ENSMUSG00000001999	Blvra	0610006A11Rik|2500001N03Rik|Blvr	biliverdin reductase A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-89383913-4	chr13	89383766	89383966	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR44B|LTR|ERVK	-156770.0	NM_013500	12950.0	Mm.266790	NM_013500	ENSMUSG00000021613	Hapln1	BB099155|CLP|Crtl1|Crtl1l|LP|LP-1	hyaluronan and proteoglycan link protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88502307-2	chr3	88502207	88502407	+	917.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001002011, intron 1 of 11)	intron (NM_001002011, intron 1 of 11)	1045.0	NM_001111102	16905.0	Mm.243014	NM_019390	ENSMUSG00000028063	Lmna	Dhe	lamin A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-186834145-2	chr1	186833992	186834192	+	890.43335	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-84734.0	NM_026041	67223.0	Mm.289841	NM_026041	ENSMUSG00000001305	Rrp15	2810430M08Rik|5430437H21Rik	ribosomal RNA processing 15 homolog (S. cerevisiae)	protein-coding	0.903369632141738	2.03999160436391	0.718119432945881	2.71503650600997	0.666246265355368	1.81060278929564	0.723935338940578	0.970111428864646	-2.00177306902613	0.14739502325222	0.597466522728415
Merged-chr5-129965896-1	chr5	129965796	129965996	+	598.0	f0_balb.idr	intron (NM_001001327, intron 1 of 1)	RSINE1|SINE|B4	23787.0	NM_027121	69568.0	Mm.288718	NM_027121	ENSMUSG00000066735	Vkorc1l1	2310024K08Rik	vitamin K epoxide reductase complex, subunit 1-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-125273265-2	chr5	125273165	125273365	+	767.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	67829.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-77422303-2	chr8	77422203	77422403	+	609.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_030113, intron 5 of 22)	MLT1A1|LTR|ERVL-MaLR	-94753.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153543189-4	chr2	153543085	153543285	+	804.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-13214.0	NM_001134300	329540.0	Mm.50600	NM_001001986	ENSMUSG00000061411	Nol4l	4931410H15|8430427H17Rik|AI429157|Gm1636	nucleolar protein 4-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167540006-2	chr2	167539906	167540106	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011427, intron 2 of 2)	intron (NM_011427, intron 2 of 2)	1811.0	NM_011427	20613.0	Mm.2093	NM_011427	ENSMUSG00000042821	Snai1	Sna|Sna1|Snail|Snail1	snail family zinc finger 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-133511092-2	chr2	133510992	133511192	+	858.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41067.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-84884960-2	chr2	84884860	84885060	+	922.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_199223, intron 1 of 2)	intron (NM_199223, intron 1 of 2)	1732.0	NM_199223	269295.0	Mm.86447	NM_199223	ENSMUSG00000050896	Rtn4rl2	Ngr2|Ngrh1|Ngrl3	reticulon 4 receptor-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-30597336-3	chr14	30597211	30597411	+	826.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011103, intron 17 of 17)	intron (NM_011103, intron 17 of 17)	12999.0	NM_001310682	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	0.53222129468958	0.769384617144765	0.28795828051875	0.283248858328224	0.538825805090748	0.77883276118484	0.289305711465955	0.699673676521382	0.687090696826335	0.704049785462762	1
Merged-chr9-35122025-2	chr9	35121925	35122125	+	721.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_029475, intron 2 of 5)	intron (NR_029475, intron 2 of 5)	-5161.0	NM_009178	20443.0	Mm.275973	NM_009178	ENSMUSG00000032038	St3gal4	SIAT4-C|ST3Gal IV|ST3GalIV|Siat4c	ST3 beta-galactoside alpha-2,3-sialyltransferase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-23894418-4	chr5	23894333	23894533	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42200.0	NR_028536	100217436.0		NR_028536		Snord93	Gm22397|MBII-336	small nucleolar RNA, C/D box 93	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-9186540-2	chr13	9186440	9186640	+	749.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-89985.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-31634045-4	chr12	31633933	31634133	+	984.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007530, intron 1 of 6)	RSINE1|SINE|B4	564.0	NM_007530	12033.0	Mm.242379	NM_007530	ENSMUSG00000020650	Bcap29	AW208404|Bap29	B cell receptor associated protein 29	protein-coding	3.40039797240365	2.89762180238804	2.68908034968566	2.49284179474538	3.09057735978332	2.67196762786625	2.82327835966199	2.21491149288166	-0.343141568059063	0.628572467471498	0.981044028886007
Merged-chr5-21035309-2	chr5	21035209	21035409	+	888.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356590)	promoter-TSS (NM_001356590)	-62.0	NM_001356590	19248.0	Mm.319117	NM_011203	ENSMUSG00000028771	Ptpn12	P19-PTP|PTP-P19|PTP-PEST|PTPG1	protein tyrosine phosphatase, non-receptor type 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-39899180-4	chr10	39899074	39899274	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033628)	promoter-TSS (NR_033628)	64.0	NR_033628	213332.0	Mm.484359	NR_033628		Mfsd4b4	AA474331	major facilitator superfamily domain containing 4B4	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-62600706-3	chr4	62600611	62600811	+	858.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019492, intron 3 of 19)	intron (NM_019492, intron 3 of 19)	-18961.0	NM_001081650	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-110109342-4	chr7	110109231	110109431	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12728.0	NM_001355058	22390.0	Mm.287173	NM_009516	ENSMUSG00000031016	Wee1	Wee1A	WEE 1 homolog 1 (S. pombe)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106827270-2	chr11	106827170	106827370	+	832.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_025481, intron 16 of 18)	intron (NM_025481, intron 16 of 18)	38018.0	NM_001166685	320162.0	Mm.30524	NM_177088	ENSMUSG00000018372	Cep95	4732496G21Rik|AI118346|AI448335|Ccdc45|D330027A14Rik|F630025I20Rik	centrosomal protein 95	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-130170283-2	chr5	130170183	130170383	+	579.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1536.0	NM_001199059	56715.0	Mm.288639	NM_019983	ENSMUSG00000025340	Rabgef1	Rab5ef|Rabex5|Rin2	RAB guanine nucleotide exchange factor (GEF) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41379196-2	chr19	41379096	41379296	+	654.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 1 of 16)	intron (NM_031376, intron 1 of 16)	5874.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	1.26575940066487	1.12459490607871	0.562560315794924	0.554073122009844	1.27987385270684	1.38795711818008	0.56497013984014	0.555562384478547	0.3936695069482	0.816105909961816	0.998431161219273
Merged-chr11-97310144-4	chr11	97310050	97310250	+	989.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-5566.0	NM_025927	67036.0	Mm.5381	NM_025927	ENSMUSG00000018882	Mrpl45	2600005P05Rik|AU043542|R75241	mitochondrial ribosomal protein L45	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-62069849-1	chr18	62069749	62069949	+	541.0	f1_balb.idr	Intergenic	Intergenic	110132.0	NM_007420	11555.0	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-22342936-4	chr9	22342851	22343051	+	997.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028390, intron 20 of 23)	L1M4|LINE|L1	-12261.0	NR_033622	625603.0	Mm.37987	NR_033622		Gm6607	EG625603	40S ribosomal protein S20 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-137074357-4	chr5	137074273	137074473	+	782.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2101.0	NM_008871	18787.0	Mm.250422	NM_008871	ENSMUSG00000037411	Serpine1	PAI-1|PAI1|Planh1	serine (or cysteine) peptidase inhibitor, clade E, member 1	protein-coding	0.707392628665148	0.273449464800628	0.262911507501066	0.254642775286341	0.428482044480209	0.275798138713444	1.59742060636001	0.783193287960564	2.60461819235183	0.15721690003049	1
Merged-chr8-18933413-2	chr8	18933313	18933513	+	652.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001286469, exon 7 of 7)	3' UTR (NM_001286469, exon 7 of 7)	17458.0	NM_001286469	319581.0	Mm.111354	NM_176951	ENSMUSG00000039814	Xkr5	5430438H03Rik|XRG5	X-linked Kx blood group related 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10833828-4	chr19	10833742	10833942	+	857.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-3784.0	NM_009852	12511.0	Mm.290897	NM_009852	ENSMUSG00000024670	Cd6	-	CD6 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-11055840-4	chr19	11055756	11055956	+	935.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	-5290.0	NR_102366	107350.0	Mm.6381	NM_001177351	ENSMUSG00000075010	AW112010	-	expressed sequence AW112010	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19504187-2	chr7	19504087	19504287	+	818.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	4144.0	NM_177692	232946.0	Mm.64557	NM_177692	ENSMUSG00000057667	Bloc1s3	BC043666|Blos3|E230011O18|rp	biogenesis of lysosomal organelles complex-1, subunit 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19368623-2	chr7	19368523	19368723	+	667.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001010836, intron 2 of 12)	intron (NM_001010836, intron 2 of 12)	7407.0	NM_001010836	333654.0	Mm.333640	NM_001010836	ENSMUSG00000040734	Ppp1r13l	AV260376|IASPP|Nkip1|wa3	protein phosphatase 1, regulatory (inhibitor) subunit 13 like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-129430685-3	chr3	129430586	129430786	+	844.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2987.0	NR_033594	435755.0	Mm.430561	NR_033594	ENSMUSG00000105712	Pou5f1-rs4	EG435755|Gm5712|Oct4P1|Otf3-rs4|Otf3d	POU domain, class 5, transcription factor 1, related sequence 4	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-34518726-2	chr19	34518626	34518826	+	823.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111100, intron 3 of 9)	intron (NM_001111100, intron 3 of 9)	8748.0	NM_001111100	16889.0	Mm.157545	NM_021460	ENSMUSG00000024781	Lipa	AA960673|Lal|Lip-1|Lip1	lysosomal acid lipase A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-154188671-2	chr4	154188571	154188771	+	559.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162977, intron 3 of 36)	intron (NM_001162977, intron 3 of 36)	17958.0	NM_001162977	230971.0	Mm.275216	NM_172273	ENSMUSG00000057751	Megf6	2600001P17Rik|Egfl3	multiple EGF-like-domains 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-64287593-4	chr7	64287491	64287691	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172742)	promoter-TSS (NM_172742)	-79.0	NM_172742	233315.0	Mm.214959	NM_172742	ENSMUSG00000030522	Mtmr10	BB128963|C79734	myotubularin related protein 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-103109226-1	chr9	103109126	103109326	+	575.0	f0_c57.idr	Intergenic	Intergenic	-2848.0	NM_173781	270192.0	Mm.490252	NM_173781	ENSMUSG00000032549	Rab6b	9630015C03|AI844641|C330006L04Rik|D9Bwg0185e	RAB6B, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89418444-4	chr3	89418349	89418549	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016904)	promoter-TSS (NM_016904)	-102.0	NM_011368	20416.0	Mm.86595	NM_011368	ENSMUSG00000042626	Shc1	Shc|ShcA|p66|p66shc	src homology 2 domain-containing transforming protein C1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-85505476-2	chr13	85505376	85505576	+	685.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-215990.0	NM_145452	218397.0	Mm.259653	NM_145452	ENSMUSG00000021549	Rasa1	Gap|RasGAP|Rasa	RAS p21 protein activator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-55419138-4	chr1	55419031	55419231	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114663, intron 1 of 5)	intron (NM_001114663, intron 1 of 5)	13185.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	4.96311359364031	3.83323363185633	4.59512337623974	5.52765270610819	4.87727926225591	5.09605826481007	4.57733241716911	5.55071978724337	0.240220783221711	0.547948485742542	0.95796208018571
Merged-chr19-53477463-2	chr19	53477363	53477563	+	647.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12667.0	NR_028427	381232.0	Mm.248624	NR_028427	ENSMUSG00000097636	Mirt1	4833407H14Rik|5430437C04Rik|5830416P10Rik|Gm10758	myocardial infarction associated transcript 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96301810-2	chr3	96301702	96301902	+	652.083374	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-7833.0	NM_010186	14129.0	Mm.150	NM_010186	ENSMUSG00000015947	Fcgr1	AI323638|AV092959|CD64|FcgammaRI|IGGHAFC	Fc receptor, IgG, high affinity I	protein-coding	0.177099577407435	0.418444055497555	1.03211174185102	0.187666638689955	0.178680997339315	0.424049956780383	1.04674725835444	0.188770139880651	0.0407218697064163	0.983346829579543	1
Merged-chr1-86411171-2	chr1	86411071	86411271	+	779.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15158.0	NM_027966	71863.0	Mm.179627	NM_027966	ENSMUSG00000036574	Tex44	1700019O17Rik	testis expressed 44	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-10695173-3	chr16	10695073	10695273	+	809.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177562, intron 21 of 22)	intron (NM_177562, intron 21 of 22)	90363.0	NM_009896	12703.0	Mm.130	NM_009896	ENSMUSG00000038037	Socs1	Cish1|Cish7|JAB|SOCS-1|SSI-1	suppressor of cytokine signaling 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-93567269-4	chr10	93567183	93567383	+	980.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359749, intron 5 of 13)	intron (NM_001359749, intron 5 of 13)	12402.0	NM_001359749	237465.0	Mm.477086	NM_175488	ENSMUSG00000036168	Ccdc38	4933417K05Rik	coiled-coil domain containing 38	protein-coding	2.59887711623931	2.52119324078966	2.91930157294161	2.2147402785247	3.28796739839626	2.68611099151746	3.03696364971223	3.25629744973203	0.958960983266954	0.159488976915941	0.618870874850409
Merged-chr1-74390776-4	chr1	74390676	74390876	+	923.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153088)	promoter-TSS (NM_153088)	-833.0	NM_153088	227292.0	Mm.165042	NM_153088	ENSMUSG00000026176	Ctdsp1	GIP|NLIIF|Nif3|SCP1	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-65549132-4	chr16	65549019	65549219	+	969.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026879, intron 2 of 5)	CYRA11_Mm|Unknown|Y-chromosome	13578.0	NM_026879	68942.0	Mm.432944	NM_026879	ENSMUSG00000004843	Chmp2b	1190006E07Rik	charged multivesicular body protein 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-57059568-3	chr17	57059486	57059686	+	924.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_025877, exon 1 of 10)	exon (NM_025877, exon 1 of 10)	277.0	NM_025877	66972.0	Mm.23720	NM_025877	ENSMUSG00000046329	Slc25a23	2310067G05Rik|SCaMC-3	solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-59175003-1	chr11	59174903	59175103	+	554.0	f1_balb.idr	TTS (NM_080454)	TTS (NM_080454)	7823.0	NM_175452	118454.0	Mm.40016	NM_080454	ENSMUSG00000043448	Gjc2	B230382L12Rik|Cx47|Gja12	gap junction protein, gamma 2	protein-coding	1.88767792384739	0.852743522999639	0.83722954695008	0.825024049185691	1.39750344901359	1.44909003355419	1.39593936299236	1.78364253850257	1.03621316489956	0.457459421610594	0.919462395309797
Merged-chr10-100898697-4	chr10	100898608	100898808	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-157073.0	NR_152765	102639396.0	Mm.404529	NR_152765		Gm35722	-	predicted gene, 35722	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-119149609-1	chr10	119149509	119149709	+	663.0	f1_c57bl6.idr	Intergenic	RMER20C_Mm|LTR|ERVK	56704.0	NR_045348	73400.0	Mm.416864	NR_045348	ENSMUSG00000100681	1700064J06Rik	-	RIKEN cDNA 1700064J06 gene	ncRNA	-0.531086841030567	-0.512105775998845	-0.518224735923343	0.732180326871873	-0.343949522739351	-0.510739275525387	-0.51686707842575	-0.522170498415898	-3.09458776972571	0.226100067268992	1
Merged-chr1-36437423-3	chr1	36437312	36437512	+	886.333374	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310517, intron 4 of 8)	intron (NM_001310517, intron 4 of 8)	7859.0	NM_001013374	214895.0	Mm.287854	NM_001013374	ENSMUSG00000001143	Lman2l	A630028F14Rik|VIP36-like|VIPL	lectin, mannose-binding 2-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-35081182-4	chr7	35081075	35081275	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24609.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129875597-2	chr4	129875497	129875697	+	846.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30629.0	NR_045190	319894.0	Mm.59196	NR_045190	ENSMUSG00000086369	E330017L17Rik	-	RIKEN cDNA E330017L17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133092799-4	chr4	133092637	133092837	+	860.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37896.0	NM_153423	242687.0	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	0.875005873485793	1.28286946632024	0.591698429600368	1.06346279100239	1.59795208743095	0.605124439825491	0.968266820436682	0.584634530255903	0.20689922949118	0.895442508477848	0.998431161219273
Merged-chr7-67460036-4	chr7	67459943	67460143	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-87185.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	3.03402043067036	2.92952994752037	3.39097547170542	4.01623291956404	3.45693220219892	3.33205281114685	3.99076207449935	3.81896536696528	0.387391706554961	0.485884400861303	0.932344766211842
Merged-chr5-103659239-2	chr5	103659139	103659339	+	689.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-3507.0	NM_001163550	74218.0	Mm.159141	NM_028824	ENSMUSG00000029320	1700016H13Rik	-	RIKEN cDNA 1700016H13 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-64240924-3	chr15	64240821	64241021	+	904.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 3 of 28)	intron (NM_001276461, intron 3 of 28)	71752.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-87496362-4	chr6	87496274	87496474	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175476)	promoter-TSS (NM_175476)	-47.0	NM_175476	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120232097-2	chr11	120231997	120232197	+	662.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347621)	promoter-TSS (NM_001347621)	-480.0	NR_151480	102640779.0	Mm.394084	NM_175248		2900052L18Rik	-	RIKEN cDNA 2900052L18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-52858393-3	chr1	52858294	52858494	+	740.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146108, intron 2 of 13)	RLTR13C2|LTR|ERVK	13356.0	NM_146108	227095.0	Mm.222063	NM_146108	ENSMUSG00000041426	Hibch	2610509I15Rik|HIBYL-COA-H	3-hydroxyisobutyryl-Coenzyme A hydrolase	protein-coding	1.29163145527626	0.970514702472448	1.98302533866681	2.61041993956319	1.92131467811963	1.95691180670139	0.951341645315583	0.929527821779172	-0.910510058835729	0.477286358399025	0.927980290875356
Merged-chr1-155425978-4	chr1	155425878	155426078	+	836.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8534.0	NM_011273	19775.0	Mm.266215	NM_011273	ENSMUSG00000026469	Xpr1	Rmc-1|Rmc1|Sxv|Syg1|XR	xenotropic and polytropic retrovirus receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-143975539-4	chr5	143975474	143975674	+	832.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	39279.0	NM_177682	231874.0	Mm.320432	NM_177682	ENSMUSG00000029617	Ccz1	AU022870	CCZ1 vacuolar protein trafficking and biogenesis associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111437716-4	chr12	111437596	111437796	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4965.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-41784327-3	chr15	41784235	41784435	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152565, intron 3 of 17)	intron (NR_152565, intron 3 of 17)	-4660.0	NM_001358976	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-121371630-4	chr3	121371532	121371732	+	990.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54909.0	NM_028044	71994.0	Mm.275555	NM_028044	ENSMUSG00000053931	Cnn3	1600014M03Rik|C85854|Calpo3	calponin 3, acidic	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-80176652-4	chr2	80176610	80176810	+	800.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger5|DNA|TcMar-Tigger	-47052.0	NM_001355140	18573.0	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-83064937-4	chr13	83064834	83065034	+	970.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-366601.0	NR_039537	100628621.0		NR_039537	ENSMUSG00000106655	Mir3961	mmu-mir-3961	microRNA 3961	ncRNA	1.97423373883471	2.36786047449189	2.40818091654941	1.93241478486369	2.51705132089788	1.88351057095883	3.34168521304814	1.55646672861986	0.739603983224046	0.412572745561185	0.894783826796838
Merged-chr13-23564534-2	chr13	23564434	23564634	+	913.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-2169.0	NM_178205	319151.0	Mm.261658	NM_178205	ENSMUSG00000069273	Hist1h3e	H3-f|H3.1	histone cluster 1, H3e	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-100568771-4	chr3	100568712	100568912	+	768.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010763, intron 12 of 12)	intron (NM_010763, intron 12 of 12)	-79620.0	NM_001142952	74645.0	Mm.226900	NM_001142952	ENSMUSG00000044468	Fam46c	4930431B09Rik|AI449797	family with sequence similarity 46, member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-21172811-3	chr13	21172709	21172909	+	962.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7122.0	NM_009054	19720.0	Mm.314056	NM_009054	ENSMUSG00000021326	Trim27	AW538890|Gm19403|Rfp	tripartite motif-containing 27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-4238007-3	chr8	4237871	4238071	+	903.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164172)	promoter-TSS (NM_001164172)	-769.0	NM_011944	26400.0	Mm.3906	NM_011944	ENSMUSG00000002948	Map2k7	5930412N11Rik|JNKK 2|Jnkk2|MAPKK 7|MEK 7|Mapkk7|Mek7|Mkk7|Prkmk7|sek2	mitogen-activated protein kinase kinase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-88888291-2	chr5	88888191	88888391	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359211, intron 1 of 26)	intron (NM_001359211, intron 1 of 26)	1031.0	NM_018760	54403.0	Mm.41044	NM_018760	ENSMUSG00000060961	Slc4a4	AI835705|NBC|NBC1	solute carrier family 4 (anion exchanger), member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-6287890-2	chr7	6287790	6287990	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001024928, intron 1 of 4)	intron (NM_001024928, intron 1 of 4)	1310.0	NM_001024928	384763.0	Mm.276279	NM_001024928	ENSMUSG00000054893	Zfp667	A830025F02Rik|Mip1|ZNF667	zinc finger protein 667	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-80256009-4	chr15	80255899	80256099	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009716, intron 1 of 2)	CpG	815.0	NM_009716	11911.0	Mm.641	NM_009716	ENSMUSG00000042406	Atf4	Atf-4|C/ATF|CREB2|TAXREB67	activating transcription factor 4	protein-coding	4.86397667286178	4.28076035612069	4.5707010495394	3.49145101288428	4.27499110216833	3.65671507293993	4.50833480080985	4.60345866144139	-0.110347384154687	0.806052522585275	0.998431161219273
Merged-chr16-43640783-2	chr16	43640683	43640883	+	547.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_030576)	TTS (NR_030576)	128.0	NR_030576	100124467.0		NR_030576	ENSMUSG00000076372	Mir568	Mirn568|mmu-mir-568	microRNA 568	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-24681291-4	chr1	24681208	24681408	+	891.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310483, intron 1 of 15)	intron (NM_001310483, intron 1 of 15)	2390.0	NM_001310483	68421.0	Mm.336563	NM_026719	ENSMUSG00000073725	Lmbrd1	0910001K20Rik|AV347960	LMBR1 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-114100241-4	chr5	114100138	114100338	+	962.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033202)	promoter-TSS (NM_001033202)	-95.0	NM_001033202	100756.0	Mm.240421	NM_001033202	ENSMUSG00000029592	Usp30	6330590F17Rik|AI851327|D5Ertd483e	ubiquitin specific peptidase 30	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-102701691-4	chr2	102701577	102701777	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077514, intron 1 of 10)	intron (NM_001077514, intron 1 of 10)	-4761.0	NM_011393	20511.0	Mm.267547	NM_011393	ENSMUSG00000005089	Slc1a2	1700091C19Rik|2900019G14Rik|AI159670|Eaat2|GLT-1|GLT1|MGLT1	solute carrier family 1 (glial high affinity glutamate transporter), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-69901690-4	chr8	69901579	69901779	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_032004)	promoter-TSS (NM_032004)	-505.0	NM_032004	83984.0	Mm.432504	NM_032004	ENSMUSG00000047654	Tssk6	Sstk|TSK-6|TSSK-6	testis-specific serine kinase 6	protein-coding	5.63030798430409	4.5374863936377	6.26937000995073	4.93800422422357	5.86432157485366	5.66312951270503	5.1425064379148	5.57071725241128	0.0898264546605419	0.800705237508635	0.998431161219273
Merged-chr11-121795109-4	chr11	121794976	121795176	+	843.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35142.0	NM_029049	74675.0	Mm.61213	NM_029049	ENSMUSG00000039198	Ptchd3	4930451E13Rik|4933440L20Rik|RNDEu-3	patched domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84671737-1	chr8	84671637	84671837	+	675.0	f1_balb.idr	3' UTR (NM_025788, exon 6 of 6)	3' UTR (NM_025788, exon 6 of 6)	-8885.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	0.329226293262085	0.0945983368222092	0.255766680165969	0.588688051585346	0.0801891185216328	0.0957395023159931	0.260321473702608	0.595370418665432	-0.383830749245517	0.844807783057337	1
Merged-chr4-33099331-4	chr4	33099230	33099430	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33226.0	NM_008075	14408.0	Mm.14116	NM_008075	ENSMUSG00000028280	Gabrr1	GABA-C	gamma-aminobutyric acid (GABA) C receptor, subunit rho 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-137865576-2	chr5	137865476	137865676	+	699.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001024932)	TTS (NM_001024932)	6182.0	NM_001024932	545812.0	Mm.332769	NM_001024932	ENSMUSG00000066682	Pilrb2	EG545812	paired immunoglobin-like type 2 receptor beta 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-46908709-3	chr1	46908603	46908803	+	701.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356417, intron 1 of 10)	intron (NM_001356417, intron 1 of 10)	17073.0	NM_001356417	227059.0	Mm.233889	NM_172653	ENSMUSG00000025986	Slc39a10	2900042E17Rik|5430433I10|Zip10|mKIAA1265	solute carrier family 39 (zinc transporter), member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-56775235-2	chr19	56775135	56775335	+	971.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38448.0	NM_170757	213993.0	Mm.469677	NM_170757	ENSMUSG00000035173	Ccdc186	1810028B20Rik|A630007B06Rik|AI159700|Otg1	coiled-coil domain containing 186	protein-coding	1.12024682436721	0.836679628858548	0.312004373359583	0.306022752991636	0.58732571127569	0.846786028880463	0.313709084118758	0.307069831844892	-0.930354144798571	0.620747894948048	1
Merged-chr7-128135326-2	chr7	128135226	128135426	+	672.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_021334, exon 10 of 30)	exon (NM_021334, exon 10 of 30)	5758.0	NM_021334	16411.0	Mm.22378	NM_021334	ENSMUSG00000030789	Itgax	AI449405|Cd11c|Cr4|N418	integrin alpha X	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-93334736-2	chr6	93334636	93334836	+	718.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	394154.0	NR_015530	330385.0	Mm.483472	NR_015530	ENSMUSG00000097462	9530026P05Rik	B430306B02	RIKEN cDNA 9530026P05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-136642401-3	chr5	136642309	136642509	+	859.8666380000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50737.0	NM_001303019	59310.0	Mm.5178	NM_021611	ENSMUSG00000005474	Myl10	1700027I08Rik|Mylc2pl|PLRLC	myosin, light chain 10, regulatory	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-27206530-2	chr8	27206430	27206630	+	886.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3983.0	NM_029674	76615.0	Mm.272794	NM_029674	ENSMUSG00000039720	Got1l1	1700083M11Rik	glutamic-oxaloacetic transaminase 1-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150227407-4	chr4	150227288	150227488	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-9809.0	NM_023119	13806.0	Mm.70666	NM_023119	ENSMUSG00000063524	Eno1	0610008I15|AL022784|Eno-1|MBP-1	enolase 1, alpha non-neuron	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-90167945-2	chr11	90167845	90168045	+	545.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-81531.0	NM_026178	67468.0	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-154264640-4	chr2	154264519	154264719	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175167, intron 6 of 14)	intron (NM_175167, intron 6 of 14)	6740.0	NM_175167	71425.0	Mm.389341	NM_175167	ENSMUSG00000067998	Bpifb9a	4833413D08Rik|AI413838	BPI fold containing family B, member 9A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-7911186-3	chr17	7911090	7911290	+	865.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	-14810.0	NM_145968	72536.0	Mm.119680	NM_145968	ENSMUSG00000033450	Tagap	2610315E15Rik|TRD|Tcd-1|Tcd1|Tcd1a|tcs-1|tcs1	T cell activation Rho GTPase activating protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-37618978-2	chr13	37618860	37619060	+	578.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-207078.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	-0.808736631581807	-0.750635121739295	-0.941021217146143	-0.943028207188267	-0.481089625296579	-0.929200713403627	-0.940446200855768	-0.942678095027204	0.809154882446454	0.783544499184789	1
Merged-chr12-116049832-3	chr12	116049677	116049877	+	866.900024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019565, intron 1 of 2)	intron (NM_019565, intron 1 of 2)	2053.0	NM_019565	56220.0	Mm.254997	NM_019565	ENSMUSG00000042063	Zfp386	Kzf1|mKIAA4205	zinc finger protein 386 (Kruppel-like)	protein-coding	2.53297207055336	2.09006839590466	2.01687256220202	1.95773308098578	1.49910905095271	2.27480614010868	3.49517333827446	2.5966017763273	1.04525267958138	0.239425947094638	0.736069144151382
Merged-chr9-116123755-4	chr9	116123644	116123844	+	888.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029575, intron 3 of 6)	Lx9|LINE|L1	51619.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-35634048-4	chr9	35633960	35634160	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14142.0	NM_001167592	100312956.0	Mm.475850	NM_001167592	ENSMUSG00000094995	Pate3	Gm17365|Pate-dj	prostate and testis expressed 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-78525426-2	chr1	78525326	78525526	+	864.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026713, intron 4 of 6)	intron (NM_026713, intron 4 of 6)	14366.0	NM_026713	68393.0	Mm.41325	NM_026713	ENSMUSG00000012187	Mogat1	0610030A14Rik|1110064N14Rik|Dgat2l|Dgat2l1|MGAT1|WI1-2612I11.1|mDC2	monoacylglycerol O-acyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-76531465-4	chr10	76531344	76531544	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146006)	promoter-TSS (NM_146006)	-161.0	NM_146006	16987.0	Mm.55075	NM_146006	ENSMUSG00000033105	Lss	2810025N20Rik|D10Ertd116e|Osc	lanosterol synthase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-65562635-3	chr4	65562535	65562735	+	903.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207109, intron 17 of 22)	intron (NM_207109, intron 17 of 22)	-42351.0	NM_053084	69807.0	Mm.22786	NM_053084	ENSMUSG00000051675	Trim32	1810045E12Rik|3f3|BBS11|Zfp117	tripartite motif-containing 32	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-18277647-3	chr9	18277554	18277754	+	620.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14613.0	NM_025844	66917.0	Mm.103534	NM_025844	ENSMUSG00000001774	Chordc1	1110001O09Rik|AA409036|Chp-1|morgana	cysteine and histidine-rich domain (CHORD)-containing, zinc-binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-57301766-4	chr16	57301674	57301874	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_025599)	TTS (NM_025599)	-8923.0	NM_027651	71027.0	Mm.158563	NM_027651	ENSMUSG00000022753	Tmem30c	4933401B01Rik|4933409A18Rik|Cdc50c	transmembrane protein 30C	protein-coding	4.06539686824156	4.63042147741044	4.33746171247867	3.63009048664043	3.46421647804885	4.45380202847173	5.1745825205481	3.26476033713144	0.133177427267281	0.798657283929365	0.998431161219273
Merged-chr2-84522552-2	chr2	84522452	84522652	+	850.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15679.0	NR_046046	672763.0	Mm.491046	NR_046046	ENSMUSG00000087362	Gm13710	-	predicted gene 13710	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-74965260-2	chr9	74965160	74965360	+	664.166687	f1_balb.idr|f1_c57bl6.idr	intron (NR_153342, intron 2 of 12)	intron (NR_153342, intron 2 of 12)	-10851.0	NM_153584	235493.0	Mm.208955	NM_153584	ENSMUSG00000034858	Fam214a	6330415I01Rik|AI553555|C130047D21Rik|Kiaa1370|mKIAA1370	family with sequence similarity 214, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-92116081-2	chr1	92115981	92116181	+	708.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_207225, intron 2 of 26)	intron (NM_207225, intron 2 of 26)	64260.0	NM_207225	208727.0	Mm.318567	NM_207225	ENSMUSG00000026313	Hdac4	4932408F19Rik|HD4	histone deacetylase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-57845285-4	chr18	57845167	57845367	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33411.0	NM_009194	20496.0	Mm.399997	NM_009194	ENSMUSG00000024597	Slc12a2	9330166H04Rik|Nkcc1|mBSC2|sy-ns	solute carrier family 12, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166774677-2	chr2	166774579	166774779	+	895.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19088.0	NM_023815	76367.0	Mm.330796	NM_023815	ENSMUSG00000042854	Trp53rkb	2810408M09Rik|4933401B08Rik|5630401H01Rik|Nori-2|PRPK|Tp53rk|Trp53rk|Trp53tk|mNori-2p	transformation related protein 53 regulating kinase B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71636151-3	chr8	71636034	71636234	+	782.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001029873, intron 36 of 41)	intron (NM_001029873, intron 36 of 41)	-5028.0	NR_106035	102466799.0		NR_106035	ENSMUSG00000098976	Mir6769b	Gm27546|mmu-mir-6769b	microRNA 6769b	ncRNA	1.96601926930886	0.951521689884641	1.55952973675918	1.78028978876455	1.28257203876905	0.956777339388685	2.68724626018857	1.15395016991951	0.376840599930696	0.76100471183802	0.998431161219273
Merged-chr10-56547993-4	chr10	56547916	56548116	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	116035.0	NR_152768	102640560.0	Mm.417249	NR_152768		Gm36595	-	predicted gene, 36595	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-91587115-1	chr12	91587015	91587215	+	601.0	f0_balb.idr	intron (NM_175335, intron 1 of 8)	intron (NM_175335, intron 1 of 8)	2534.0	NM_031391	83602.0	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-58536509-2	chr16	58536409	58536609	+	676.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12256.0	NM_001357434	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-4433144-1	chr10	4433044	4433244	+	1000.0	f1_balb.idr	promoter-TSS (NM_025343)	promoter-TSS (NM_025343)	539.0	NM_024261	73419.0	Mm.346733	NM_024261	ENSMUSG00000061759	Armt1	1700052N19Rik|AW320013|AW536799	acidic residue methyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-73918418-2	chr17	73918318	73918518	+	830.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_011723, exon 14 of 36)	exon (NM_011723, exon 14 of 36)	31778.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-44142754-3	chr16	44142624	44142824	+	607.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028108, intron 1 of 4)	B1_Mus1|SINE|Alu	2915.0	NM_028108	72117.0	Mm.278726	NM_028108	ENSMUSG00000022698	Naa50	2600005K24Rik|2810441M03Rik|AW112078|Mak3|Mak3p|Nat13|Nat5|San	N(alpha)-acetyltransferase 50, NatE catalytic subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-12798626-4	chr19	12798524	12798724	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134152)	promoter-TSS (NM_134152)	45.0	NM_134152	107321.0	Mm.313136	NM_134152	ENSMUSG00000024696	Lpxn	4933402K05Rik|A530083L21Rik|AV278559|LDPL	leupaxin	protein-coding	4.1459259269823	2.85376905168712	4.00215988041499	3.46680295338903	3.99946831353373	3.80387936437113	3.83258946307175	4.08402285188149	0.307275888095191	0.541993448185309	0.954866069207078
Merged-chr10-77969424-2	chr10	77969324	77969524	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_138301, intron 1 of 33)	intron (NM_138301, intron 1 of 33)	448.0	NM_138301	28240.0	Mm.276762	NM_138301	ENSMUSG00000009292	Trpm2	9830168K16Rik|C79133|LTRPC2|TRPC7|Trp7|Trrp7	transient receptor potential cation channel, subfamily M, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-33871582-3	chr2	33871506	33871706	+	924.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175184, intron 2 of 9)	intron (NM_175184, intron 2 of 9)	16340.0	NM_175184	72543.0	Mm.254914	NM_175184	ENSMUSG00000038740	Mvb12b	2610200O14Rik|2610528K11Rik|AI414895|Fam125b	multivesicular body subunit 12B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-99182320-4	chr9	99182239	99182439	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42128.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-53149769-4	chr18	53149681	53149881	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26511.0	NM_001357463	67804.0	Mm.252171	NM_026386	ENSMUSG00000034484	Snx2	0610030A03Rik	sorting nexin 2	protein-coding	3.33716522349868	4.21618552619043	3.84091537097838	4.26915682951828	3.28514076514389	3.38940296335964	3.86971979640374	3.16898409182291	-0.74324466962888	0.150070863187849	0.602305959756336
Merged-chr1-139001202-4	chr1	139001072	139001272	+	891.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181347, intron 1 of 20)	intron (NM_181347, intron 1 of 20)	23515.0	NR_108103	78229.0	Mm.437838	NR_108103	ENSMUSG00000104900	4930596I21Rik	-	RIKEN cDNA 4930596I21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-17886538-2	chr5	17886438	17886638	+	781.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159558, intron 1 of 15)	intron (NM_001159558, intron 1 of 15)	2421.0	NM_001159558	12491.0	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 molecule	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-109051260-2	chr9	109051160	109051360	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001357933, exon 1 of 4)	5' UTR (NM_001357933, exon 1 of 4)	103.0	NM_001357940	66940.0	Mm.196533	NM_025858	ENSMUSG00000025647	Shisa5	2310008D10Rik|6430628I05Rik|Scotin|mShisa5	shisa family member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-57571586-4	chr14	57571498	57571698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026526)	promoter-TSS (NM_026526)	-16.0	NR_152103	67518.0	Mm.376343	NR_152103	ENSMUSG00000097933	1700039M10Rik	-	RIKEN cDNA 1700039M10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-93477703-3	chr2	93477597	93477797	+	863.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14747.0	NM_001136055	12521.0	Mm.4261	NM_007656	ENSMUSG00000027215	Cd82	AA682076|AL023070|C33|IA4|Kai1|Tspan27	CD82 antigen	protein-coding	-0.973244663428994	-0.952315594721777	-0.00450891433157474	-0.968117103546747	-0.972477992091202	-0.949249181104308	-0.963262521912125	-0.967581074445158	-3.30458610020401	0.291235735201707	1
Merged-chr10-34172980-5	chr10	34172882	34173082	+	935.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172508, intron 2 of 5)	intron (NM_172508, intron 2 of 5)	34569.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-35909149-3	chr3	35909061	35909261	+	781.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033623, intron 4 of 6)	intron (NM_033623, intron 4 of 6)	20913.0	NM_033623	114893.0	Mm.374810	NM_033623	ENSMUSG00000027708	Dcun1d1	Rp42|SCCRO|Tes3|pTes3	DCN1, defective in cullin neddylation 1, domain containing 1 (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96630518-2	chr3	96630418	96630618	+	566.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_003619)	promoter-TSS (NR_003619)	590.0	NM_001102407	60365.0	Mm.261972	NM_025875	ENSMUSG00000038374	Rbm8a	2310057C03Rik|AA673428|Rbm8	RNA binding motif protein 8a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-49800464-3	chr16	49800356	49800556	+	843.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55198.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72109086-2	chr6	72108986	72109186	+	627.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011375, intron 1 of 6)	intron (NM_011375, intron 1 of 6)	11478.0	NM_011375	20454.0	Mm.38248	NM_011375	ENSMUSG00000056091	St3gal5	3S-T|Siat9|[a]2	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-114630606-2	chr5	114630506	114630706	+	556.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_022017, intron 8 of 15)	intron (NM_022017, intron 8 of 15)	27815.0	NM_022017	63873.0	Mm.266450	NM_022017	ENSMUSG00000014158	Trpv4	0610033B08Rik|OTRPC4|Trp12|VR-OAC|VRL-2|VROAC	transient receptor potential cation channel, subfamily V, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-77982627-1	chr10	77982527	77982727	+	540.0	f1_balb.idr	intron (NM_026431, intron 4 of 6)	intron (NM_026431, intron 4 of 6)	3977.0	NM_026431	67884.0	Mm.297512	NM_026431	ENSMUSG00000020284	1810043G02Rik	AV026620|D10Jhu13e	RIKEN cDNA 1810043G02 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-11026450-4	chr4	11026310	11026510	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR41|LTR|ERVL	-18791.0	NM_175175	71801.0	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98586703-2	chr11	98586603	98586803	+	993.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025661, intron 1 of 3)	intron (NM_025661, intron 1 of 3)	542.0	NM_025661	66612.0	Mm.180546	NM_025661	ENSMUSG00000038150	Ormdl3	2810011N17Rik|AI315223	ORM1-like 3 (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-126860251-2	chr2	126860151	126860351	+	694.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164325, intron 1 of 38)	B3A|SINE|B2	16010.0	NM_001164325	58800.0	Mm.244705	NM_021450	ENSMUSG00000027365	Trpm7	2310022G15Rik|4833414K03Rik|5033407O22Rik|CHAK|CHAK1|LTrpC-7|Ltpr7|Ltrpc7|TRPPLIK	transient receptor potential cation channel, subfamily M, member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118400166-3	chr11	118400076	118400276	+	886.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011150, intron 1 of 5)	intron (NM_011150, intron 1 of 5)	1783.0	NM_011150	19039.0	Mm.3152	NM_011150	ENSMUSG00000033880	Lgals3bp	90K|CyCAP|MAC-2BP|Ppicap|Tango10b	lectin, galactoside-binding, soluble, 3 binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80753187-2	chr10	80753087	80753287	+	827.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2016.0	NM_199322	208266.0	Mm.152371	NM_199322	ENSMUSG00000061589	Dot1l	A630076O07|AW907654|Dot1|KMT4|mDot1	DOT1-like, histone H3 methyltransferase (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-102979330-4	chr2	102979225	102979425	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-77660.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21412431-2	chr9	21412331	21412531	+	880.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045742)	promoter-TSS (NR_045742)	594.0	NM_021888	60507.0	Mm.436579	NM_021888	ENSMUSG00000002825	Qtrt1	2610028E17Rik|Tgt	queuine tRNA-ribosyltransferase catalytic subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-31148911-4	chr7	31148816	31149016	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153431, intron 1 of 18)	(CAGC)n|Simple_repeat|Simple_repeat	2255.0	NM_027898	52857.0	Mm.27366	NM_027898	ENSMUSG00000001248	Gramd1a	1300003M23Rik|AI415002|AW547240|D7Bwg0611e	GRAM domain containing 1A	protein-coding	3.58739553351983	2.79454621215357	3.94138629499359	3.95072980360602	4.34080628588613	3.56644595777978	2.86953119127239	3.65985301752679	0.111054589966108	0.845256940701686	0.998431161219273
Merged-chr12-40550200-2	chr12	40550100	40550300	+	675.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	104147.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-108847709-4	chr9	108847573	108847773	+	806.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001359573, exon 34 of 36)	exon (NM_001359573, exon 34 of 36)	-6370.0	NM_134420	171429.0	Mm.45201	NM_134420	ENSMUSG00000023259	Slc26a6	B930010B04Rik|CFEX|Pat-1|Pat1	solute carrier family 26, member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80381741-2	chr7	80381641	80381841	+	873.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_010194, exon 11 of 19)	exon (NM_010194, exon 11 of 19)	6205.0	NM_010194	14159.0	Mm.48757	NM_010194	ENSMUSG00000053158	Fes	AI586313|BB137047|FPS|c-fes	feline sarcoma oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-136308993-4	chr7	136308885	136309085	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_102277, intron 3 of 3)	intron (NR_102277, intron 3 of 3)	40430.0	NR_040459	330664.0	Mm.127762	NR_040459	ENSMUSG00000109633	C230079O03Rik	C230079O03	RIKEN cDNA C230079O03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28447675-2	chr7	28447575	28447775	+	562.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_022024)	TTS (NM_022024)	-4310.0	NM_030562	80749.0	Mm.483073	NM_030562	ENSMUSG00000030600	Lrfn1	BC004018|SALM2|Semo1	leucine rich repeat and fibronectin type III domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-95044250-3	chr13	95044127	95044327	+	821.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172263, intron 12 of 19)	intron (NM_172263, intron 12 of 19)	67883.0	NM_172590	218460.0	Mm.33856	NM_172590	ENSMUSG00000042015	Wdr41	B830029I03Rik|MSTP048	WD repeat domain 41	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-34715947-2	chr2	34715847	34716047	+	923.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_025709, intron 9 of 26)	intron (NM_025709, intron 9 of 26)	39285.0	NM_001356441	66691.0	Mm.156452	NM_025709	ENSMUSG00000026867	Gapvd1	2010005B09Rik|4432404J10Rik|AW108497|Gapex-5|RAP6|RME-6|mKIAA1521	GTPase activating protein and VPS9 domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46521480-4	chr19	46521366	46521566	+	871.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19818.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-107669022-2	chr11	107668922	107669122	+	720.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198298, intron 27 of 31)	intron (NM_198298, intron 27 of 31)	31300.0	NR_105897	102465562.0		NR_105897	ENSMUSG00000098497	Mir6932	Gm27691|mmu-mir-6932	microRNA 6932	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-43526723-2	chr19	43526670	43526870	+	997.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-2165.0	NM_010324	14718.0	Mm.19039	NM_010324	ENSMUSG00000025190	Got1	AI789014|Got-1|cAspAT|cCAT	glutamic-oxaloacetic transaminase 1, soluble	protein-coding	1.01872335606567	1.5862342192061	0.611208964553821	0.589176946175005	1.72666419979251	2.91807868492648	0.617332416959729	0.593097210056286	2.20211132606267	0.352821803312491	0.852849893203241
Merged-chr1-167247189-4	chr1	167247072	167247272	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030724, intron 1 of 6)	intron (NM_030724, intron 1 of 6)	37955.0	NM_030724	80914.0	Mm.280895	NM_030724	ENSMUSG00000026558	Uck2	AA407809|AI481316|AU018180|AU020720|TSA903|UK|UMK|Umpk	uridine-cytidine kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-84984213-2	chr15	84984071	84984271	+	624.133301	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033273, intron 1 of 9)	intron (NM_001033273, intron 1 of 9)	3800.0	NM_001033273	223739.0	Mm.323925	NM_001033273	ENSMUSG00000036046	5031439G07Rik	AW554572|mKIAA0930	RIKEN cDNA 5031439G07 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-108730108-4	chr8	108729998	108730198	+	886.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007496, intron 1 of 9)	intron (NM_007496, intron 1 of 9)	15454.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-121712973-4	chr5	121712895	121713095	+	896.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009125, intron 1 of 24)	CpG	1386.0	NM_009125	20239.0	Mm.260900	NM_009125	ENSMUSG00000042605	Atxn2	9630045M23Rik|ATX2|AW544490|Sca2	ataxin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-43230068-4	chr17	43229952	43230152	+	957.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40295.0	NM_133776	77596.0	Mm.159950	NM_133776	ENSMUSG00000041293	Adgrf1	5031409J19Rik|Gpr110|KPG_009	adhesion G protein-coupled receptor F1	protein-coding	3.91857692995881	3.4538528170253	3.60305888174061	4.01217769980966	3.4260231795827	3.13112881557294	3.14604109850496	4.26753832209433	-0.26250118599555	0.625451410542589	0.980912176761026
Merged-chr6-47789084-2	chr6	47788984	47789184	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14568.0	NR_030485	735289.0		NR_030485	ENSMUSG00000076060	Mir704	Mirn704|mir-704|mmu-mir-704	microRNA 704	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125570206-2	chr6	125570106	125570306	+	598.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011708, intron 5 of 51)	Lx9|LINE|L1	17258.0	NM_011708	22371.0	Mm.22339	NM_011708	ENSMUSG00000001930	Vwf	6820430P06Rik|AI551257|B130011O06Rik|C630030D09|F8VWF|VWD	Von Willebrand factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-62511402-2	chr4	62511302	62511502	+	608.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001276446, intron 7 of 11)	B4|SINE|B4	8507.0	NM_001276446	17025.0	Mm.6988	NM_008525	ENSMUSG00000028393	Alad	ALADH|Lv	aminolevulinate, delta-, dehydratase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-122406153-2	chr14	122406053	122406253	+	624.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_033326, intron 1 of 3)	intron (NR_033326, intron 1 of 3)	44962.0	NR_033325	328479.0	Mm.86095	NR_033325	ENSMUSG00000064052	Gm5089	6530402A20|C030005G22Rik|EG328479	predicted gene 5089	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-51481984-2	chr14	51481884	51482084	+	742.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVB4_3-I_MM-int|LTR|ERVK	30022.0	NM_009486	22301.0	Mm.482572	NM_009486	ENSMUSG00000070448	Vmn2r89	V2r10|V2r11	vomeronasal 2, receptor 89	protein-coding	0.541475430599967	0.595725337311101	1.02489702231122	1.94263132571422	0.545036273247991	0.599518131680332	1.03546574722143	1.95571658334697	0.0304271761732896	0.984846280601861	0.998431161219273
Merged-chr5-92934424-4	chr5	92934306	92934506	+	886.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077596, intron 3 of 9)	MIR|SINE|MIR	36413.0	NM_001077596	27428.0	Mm.46014	NM_015756	ENSMUSG00000029381	Shroom3	AL022960|D5Ertd287e|Shrm|Shrm3	shroom family member 3	protein-coding	4.8623175628939	5.11758968082399	4.68216719313745	4.60264533330194	3.34260456934382	2.49150811458257	3.73542125476177	3.22422752987934	-2.08628936284421	4.63532340313974e-06	0.00023766927431996
Merged-chr4-34701721-4	chr4	34701607	34701807	+	950.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347062, intron 11 of 12)	ORR1E|LTR|ERVL-MaLR	-14269.0	NM_011895	24060.0	Mm.281885	NM_011895	ENSMUSG00000028293	Slc35a1	AA408150|AI314851	solute carrier family 35 (CMP-sialic acid transporter), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-35221347-2	chr4	35221247	35221447	+	835.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081343, intron 1 of 10)	RLTR11A|LTR|ERVK	4533.0	NM_001081343	73205.0	Mm.331544	NM_001081343	ENSMUSG00000028300	3110043O21Rik	AI840585|C9orf72	RIKEN cDNA 3110043O21 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-55421286-4	chr13	55421181	55421381	+	914.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_021489, exon 8 of 14)	exon (NM_021489, exon 8 of 14)	5523.0	NM_021489	58992.0	Mm.42224	NM_021489	ENSMUSG00000021492	F12	FXII|HAF	coagulation factor XII (Hageman factor)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135941160-2	chr4	135941078	135941278	+	938.2999880000001	f1_balb.idr|f1_c57bl6.idr	TTS (NM_024243)	TTS (NM_024243)	-5270.0	NM_008254	15356.0	Mm.482102	NM_008254	ENSMUSG00000028672	Hmgcl	AW476067|HL	3-hydroxy-3-methylglutaryl-Coenzyme A lyase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-44087819-4	chr16	44087706	44087906	+	906.158325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358203, intron 14 of 14)	intron (NM_001358203, intron 14 of 14)	-45798.0	NM_001359085	207798.0	Mm.19316	NM_153528	ENSMUSG00000036292	Gramd1c	4921521N14Rik	GRAM domain containing 1C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-75521186-2	chr10	75521086	75521286	+	561.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026095, intron 2 of 3)	ORR1D2|LTR|ERVL-MaLR	3144.0	NM_026095	67332.0	Mm.45151	NM_026095	ENSMUSG00000020180	Snrpd3	1700043E15Rik|2310009E13Rik|AW046420|SMD3	small nuclear ribonucleoprotein D3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-41136529-4	chr4	41136427	41136627	+	830.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026275, intron 1 of 4)	intron (NM_026275, intron 1 of 4)	506.0	NM_026275	67615.0	Mm.389540	NM_026275	ENSMUSG00000036241	Ube2r2	1200003M11Rik|Cdc34b|Ubc3b	ubiquitin-conjugating enzyme E2R 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-89697740-3	chr10	89697643	89697843	+	897.1555789999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_130956, intron 2 of 2)	intron (NR_130956, intron 2 of 2)	11380.0	NR_130956	69002.0	Mm.293947	NR_130956	ENSMUSG00000097383	1500026H17Rik	-	RIKEN cDNA 1500026H17 gene	ncRNA	3.29045430874711	2.51536320224067	3.70674136412039	2.34635580852316	3.575483941551	4.15642721956411	3.73462099079455	3.04591123172066	0.92167397008493	0.138401110017591	0.580742545345439
Merged-chr12-14141788-2	chr12	14141688	14141888	+	622.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10250.0	NM_029007	105005.0	Mm.227253	NM_029007	ENSMUSG00000020607	Fam84a	2310003N02Rik|4731402F03Rik|AW125753|Nse1	family with sequence similarity 84, member A	protein-coding	-1.11301502176196	-1.08843027643983	-1.10065540268584	-0.337074946373353	-1.11242900008663	-1.08578104058399	-1.09788790207088	-1.10867028474752	-2.94135471364006	0.382729701075202	1
Merged-chr13-63305817-2	chr13	63305717	63305917	+	577.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001042673, exon 16 of 16)	3' UTR (NM_001042673, exon 16 of 16)	-4534.0	NR_037235	100526474.0		NR_037235	ENSMUSG00000092741	Mir3074-1	mmu-mir-3074-1	microRNA 3074-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-31331152-2	chr15	31331052	31331252	+	583.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027496, intron 1 of 3)	RSINE1|SINE|B4	36607.0	NM_001357923	67434.0	Mm.102470	NM_026153	ENSMUSG00000022237	Ankrd33b	0610012A05Rik|3021401C12Rik|5730557B15Rik	ankyrin repeat domain 33B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88146771-2	chr3	88146671	88146871	+	714.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310593, intron 1 of 10)	intron (NM_001310593, intron 1 of 10)	4399.0	NM_133665	17261.0	Mm.28184	NM_133665	ENSMUSG00000001419	Mef2d	C80750	myocyte enhancer factor 2D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117481539-2	chr8	117481439	117481639	+	588.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16736.0	NM_172285	234779.0	Mm.192699	NM_172285	ENSMUSG00000034330	Plcg2	PLC-gamma-2|PLCgamma2|Plcg-2	phospholipase C, gamma 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-37965476-2	chr18	37965376	37965576	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175684, intron 10 of 19)	intron (NM_175684, intron 10 of 19)	4255.0	NM_175684	319262.0	Mm.285060	NM_175684	ENSMUSG00000038524	Fchsd1	A030002D08Rik	FCH and double SH3 domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-124608846-4	chr2	124608761	124608961	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290997, intron 5 of 20)	intron (NM_001290997, intron 5 of 20)	-1435.0	NM_199238	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-50889321-4	chr15	50889246	50889446	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_035444)	promoter-TSS (NR_035444)	-232.0	NR_035444	100316685.0		NR_035444	ENSMUSG00000084458	Mir1907	Mirn1907|mmu-mir-1907	microRNA 1907	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-9610548-2	chr3	9610448	9610648	+	657.666687	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133218)	promoter-TSS (NM_133218)	-463.0	NM_133218	170753.0	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-101729648-2	chr14	101729548	101729748	+	643.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_201529)	promoter-TSS (NM_201529)	-280.0	NM_201529	380928.0	Mm.218981	NM_201529	ENSMUSG00000033060	Lmo7	C78582|FBXO20|Gm914|mKIAA0858	LIM domain only 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-25987216-4	chr15	25987100	25987300	+	892.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_144523, exon 3 of 6)	exon (NM_144523, exon 3 of 6)	2834.0	NM_144523	52521.0	Mm.29145	NM_144523	ENSMUSG00000052253	Zfp622	1110033B05Rik|D15Ertd806e|ZPR9|Znf622	zinc finger protein 622	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99708881-3	chr7	99708769	99708969	+	690.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175316, intron 1 of 13)	intron (NM_175316, intron 1 of 13)	-2027.0	NM_001252530	101488.0	Mm.11249	NM_175316	ENSMUSG00000030737	Slco2b1	AI060904|AI852653|OATP-B|Slc21a9	solute carrier organic anion transporter family, member 2b1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-17900964-4	chr17	17900873	17901073	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13149.0	NM_008039	14289.0	Mm.378918	NM_008039	ENSMUSG00000052270	Fpr2	E330010I07Rik|Fpr-rs2	formyl peptide receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-133086075-4	chr3	133085982	133086182	+	791.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356309, intron 1 of 11)	intron (NM_001356309, intron 1 of 11)	5743.0	NM_026231	67553.0	Mm.304899	NM_026231	ENSMUSG00000028018	Gstcd	4933434L15Rik	glutathione S-transferase, C-terminal domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3772803-2	chr4	3772703	3772903	+	912.5833130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 10 of 12)	intron (NM_001111096, intron 10 of 12)	57839.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6288173-4	chr19	6288073	6288273	+	899.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010119, intron 2 of 4)	intron (NM_010119, intron 2 of 4)	11277.0	NM_010119	13660.0	Mm.30169	NM_010119	ENSMUSG00000024772	Ehd1	AA409636|Past1|RME-1	EH-domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-17319963-4	chr19	17319896	17320096	+	957.87915	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	19509.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	4.35671231980626	5.59732396434479	4.87036998221159	5.43821739793856	4.14746367499654	4.68574831914705	3.87277317252567	4.29764498588975	-1.0630210757623	0.00752640772185662	0.0891723237460524
Merged-chr8-109775259-2	chr8	109775159	109775359	+	565.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-3324.0	NM_009677	11765.0	Mm.37210	NM_009677	ENSMUSG00000031731	Ap1g1	AA409002|AU041323|AW551707|Adtg|D8Ertd374e	adaptor protein complex AP-1, gamma 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-5015509-5	chr7	5015360	5015560	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025324)	promoter-TSS (NM_025324)	-48.0	NM_025324	66056.0	Mm.19974	NM_025324	ENSMUSG00000051184	Zfp524	0610012F07Rik|2300009P13Rik|Znf524	zinc finger protein 524	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-95669444-2	chr4	95669344	95669544	+	582.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_029347, intron 5 of 10)	intron (NM_029347, intron 5 of 10)	90023.0	NM_029347	75578.0	Mm.276098	NM_029347	ENSMUSG00000028573	Fggy	2310009E04Rik	FGGY carbohydrate kinase domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152152619-4	chr1	152152505	152152705	+	835.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62285.0	NM_197990	69399.0	Mm.278031	NM_197990	ENSMUSG00000032666	1700025G04Rik	2610510E02Rik|2900042O04Rik	RIKEN cDNA 1700025G04 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-67380863-4	chr7	67380762	67380962	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8004.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-190881572-1	chr1	190881472	190881672	+	566.0	f1_balb.idr	intron (NM_178775, intron 5 of 14)	intron (NM_178775, intron 5 of 14)	30198.0	NM_178775	320119.0	Mm.220912	NM_178775	ENSMUSG00000089872	Rps6kc1	AA682037|B130003F20Rik|C80612|Rpk118	ribosomal protein S6 kinase polypeptide 1	protein-coding	0.686658013750605	1.20157225277537	0.263554653300259	0.256217177373062	1.23379386838961	0.275043151901273	0.265637103518314	0.257505056044078	-0.32958662981096	0.867627286080382	1
Merged-chr4-154012565-2	chr4	154012465	154012665	+	754.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_201226, intron 1 of 6)	intron (NM_201226, intron 1 of 6)	762.0	NM_201226	72946.0	Mm.260690	NM_201226	ENSMUSG00000029028	Lrrc47	2900010D03Rik|AA960559|mKIAA1185	leucine rich repeat containing 47	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-23900252-4	chr18	23900145	23900345	+	839.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-54443.0	NM_027007	69256.0	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71662642-2	chr8	71662594	71662794	+	749.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001029873, intron 6 of 41)	intron (NM_001029873, intron 6 of 41)	9063.0	NM_001029873	382018.0	Mm.334606	NM_001029873	ENSMUSG00000034799	Unc13a	2410078G03Rik|Munc13-1	unc-13 homolog A (C. elegans)	protein-coding	-0.359712852843231	0.1510231693397	-0.35075881574455	-0.354124748383448	-0.210721882639318	0.283544652527518	-0.349796612203982	-0.353536719095084	0.702651698133114	0.777640309208108	1
Merged-chr19-4878621-4	chr19	4878535	4878735	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013456)	promoter-TSS (NM_013456)	-33.0	NM_027476	70605.0	Mm.36885	NM_027476	ENSMUSG00000006463	Zdhhc24	5730496N17Rik|Leng4	zinc finger, DHHC domain containing 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-8688215-2	chr16	8688115	8688315	+	886.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001003918)	TTS (NM_001003918)	7445.0	NM_001324517	436336.0	Mm.357666	NM_001324517		Gm5767	EG436336|Gm43786	predicted gene 5767	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-43965061-2	chr13	43964961	43965161	+	640.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-156106.0	NR_045285	328235.0	Mm.188356	NR_045285	ENSMUSG00000089815	Gm5083	A730030A06	predicted gene 5083	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-57593928-3	chr18	57593832	57594032	+	791.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029290, intron 4 of 6)	intron (NM_029290, intron 4 of 6)	-41535.0	NR_015494	75084.0	Mm.243841	NR_015494	ENSMUSG00000086607	4930511M06Rik	-	RIKEN cDNA 4930511M06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-3946322-4	chr7	3946216	3946416	+	896.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30815.0	NR_028115	18726.0	Mm.440989	NM_011090	ENSMUSG00000030427	Lilra6	7M1|Pira3	leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-23446209-4	chr13	23446132	23446332	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15215.0	NR_015492	320842.0	Mm.487476	NR_015492	ENSMUSG00000085024	C230035I16Rik	-	RIKEN cDNA C230035I16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-75231544-2	chr10	75231444	75231644	+	865.5750119999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_153406, intron 2 of 15)	intron (NM_153406, intron 2 of 15)	19154.0	NM_001145826	74392.0	Mm.27716	NM_153406	ENSMUSG00000033444	Specc1l	4930470P14Rik|4932439K10Rik|9530057A13Rik|AI317249|Cytsa|mKIAA0376	sperm antigen with calponin homology and coiled-coil domains 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-129088752-4	chr6	129088647	129088847	+	977.2708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	12156.0	NM_153506	232409.0	Mm.30870	NM_153506	ENSMUSG00000030155	Clec2e	Clra|clr-a	C-type lectin domain family 2, member e	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-53247157-4	chr18	53247052	53247252	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029394, intron 1 of 6)	intron (NM_029394, intron 1 of 6)	1490.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141239524-4	chr4	141239423	141239623	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3361.0	NM_172520	213649.0	Mm.134460	NM_172520	ENSMUSG00000028919	Arhgef19	6030432F23|6430573B13Rik|WGEF	Rho guanine nucleotide exchange factor (GEF) 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-59515065-3	chr11	59514967	59515167	+	727.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8427.0	NM_172941	268417.0	Mm.239793	NM_172941	ENSMUSG00000020472	Zkscan17	Nizp1|Zfp496|Znf496	zinc finger with KRAB and SCAN domains 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-103364389-2	chr9	103364266	103364466	+	953.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_175833, intron 1 of 4)	RSINE1|SINE|B4	613.0	NM_001134427	321022.0	Mm.261025	NM_175565	ENSMUSG00000032803	Cdv3	2510010F10Rik|C230084J24Rik|C79446|TPP36	carnitine deficiency-associated gene expressed in ventricle 3	protein-coding	2.31663602352024	1.56035190334898	1.10020149971604	1.47317793122768	2.13678865637884	1.73980031305009	1.82118372869924	1.48000445056463	0.300448434813729	0.786400978454384	0.998431161219273
Merged-chr8-115638406-3	chr8	115638310	115638510	+	938.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	68484.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80618362-3	chr10	80618245	80618445	+	896.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4435.0	NM_134002	103236.0	Mm.29873	NM_134002	ENSMUSG00000003345	Csnk1g2	2810429I12Rik|AI463719	casein kinase 1, gamma 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-47953366-4	chr6	47953240	47953440	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178898)	promoter-TSS (NM_178898)	-50.0	NM_178898	101197.0	Mm.241063	NM_178898	ENSMUSG00000045466	Zfp956	AI894139	zinc finger protein 956	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122354347-4	chr5	122354302	122354502	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144912)	promoter-TSS (NM_144912)	74.0	NR_152872	56433.0	Mm.216528	NM_019780	ENSMUSG00000029462	Vps29	2010015D08Rik|AW049835|PEP11	VPS29 retromer complex component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-6582939-4	chr2	6582843	6583043	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110232, intron 11 of 15)	ORR1E|LTR|ERVL-MaLR	138719.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105698708-2	chr8	105698608	105698808	+	591.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001357333)	TTS (NM_001357333)	-2440.0	NM_001047436	56513.0	Mm.472753	NM_019695	ENSMUSG00000005699	Pard6a	0710008C04Rik|2610010A15Rik|PAR-6A|PAR6alpha|Par-6|Par6|Par6c|TAX40|Tip-40	par-6 family cell polarity regulator alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-34378373-4	chr7	34378371	34378571	+	807.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025948, intron 1 of 10)	intron (NM_025948, intron 1 of 10)	11234.0	NM_001360654	67070.0	Mm.276503	NM_025948	ENSMUSG00000066568	Lsm14a	2700023B17Rik|AA407828|AU017544|Tral|mRAP55A	LSM14A mRNA processing body assembly factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-14628056-1	chr13	14627956	14628156	+	546.0	f1_balb.idr	Intergenic	Intergenic	-2189.0	NM_001104646	105351.0	Mm.41450	NM_134067	ENSMUSG00000039182	AW209491	-	expressed sequence AW209491	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-59883990-4	chr1	59883895	59884095	+	766.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29011.0	NM_001037725	72750.0	Mm.258250	NM_001037725	ENSMUSG00000041040	Fam117b	2810425F24Rik|6330416D14Rik|Als2cr13	family with sequence similarity 117, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180763372-2	chr1	180763272	180763472	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37329.0	NM_133225	170760.0	Mm.272981	NM_133225	ENSMUSG00000026499	Acbd3	60kDa|8430407O11Rik|D1Ertd10e|GCP60|GOLPH1|Gocap1|Pap7	acyl-Coenzyme A binding domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-79243372-4	chr15	79243262	79243462	+	998.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045558, intron 6 of 12)	intron (NM_001045558, intron 6 of 12)	11386.0	NM_020516	57274.0	Mm.441697	NM_020516	ENSMUSG00000032988	Slc16a8	Mct3	solute carrier family 16 (monocarboxylic acid transporters), member 8	protein-coding	3.64199003544576	3.37925657085435	3.35900722418639	3.70935699222298	3.02867909402571	4.34589796829064	2.81462372510867	2.97606855327107	-0.121432011937629	0.839432292536095	0.998431161219273
Merged-chr19-47858064-1	chr19	47857964	47858164	+	896.0	f1_c57bl6.idr	exon (NM_010362, exon 3 of 6)	exon (NM_010362, exon 3 of 6)	3091.0	NM_010362	14873.0	Mm.378931	NM_010362	ENSMUSG00000025068	Gsto1	AA407097|AI194287|AU018802|Gsto-1|Gstx|Spg-r|p28	glutathione S-transferase omega 1	protein-coding	0.828450371707179	2.00028151936981	2.80842061438796	0.873511204767725	0.835389995012735	2.15186469131918	0.906103650806207	2.53861709269339	-0.196716577386343	0.937336586453822	0.998431161219273
Merged-chr9-106341481-4	chr9	106341383	106341583	+	911.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027354, intron 10 of 10)	intron (NM_027354, intron 10 of 10)	-27149.0	NM_153459	235584.0	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	2.5503554052571	3.03274013251403	1.28607688950121	1.72248159089698	2.20420200004518	2.21173476852303	1.56572322097522	2.99346086694974	0.0356034803760002	0.97103168888129	0.998431161219273
Merged-chr11-115186527-3	chr11	115186388	115186588	+	893.6666869999999	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033393)	promoter-TSS (NM_001033393)	828.0	NM_025400	66176.0	Mm.86823	NM_025400	ENSMUSG00000015542	Nat9	1110028N05Rik	N-acetyltransferase 9 (GCN5-related, putative)	protein-coding	-0.165729011416391	-0.145913879739654	-0.152343953580251	0.544122544678248	-0.164475273317276	-0.144472362038943	-0.150920756841391	0.815281701717164	0.703097813193282	0.772309317191018	1
Merged-chr15-73620875-4	chr15	73620769	73620969	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033219, intron 1 of 7)	intron (NM_001033219, intron 1 of 7)	-3545.0	NM_001357747	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-176853026-1	chr1	176852926	176853126	+	576.0	f0_c57.idr	intron (NM_001357390, intron 8 of 18)	intron (NM_001357390, intron 8 of 18)	-16893.0	NR_037996	15365.0	Mm.441435	NR_037996		Hmga2-ps1	EG666235|Gm7996|Hmgic-ps1|[y]i-c	high mobility group AT-hook 2, pseudogene 1	pseudo	0.763192620731378	1.42049721222501	0.623071186363822	1.20513244255803	1.23819787722291	0.636312746476644	0.625468634429327	1.31847626383308	-0.197804972728216	0.899629617148776	0.998431161219273
Merged-chr6-124732497-2	chr6	124732397	124732597	+	689.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077705, intron 2 of 15)	intron (NM_001077705, intron 2 of 15)	657.0	NM_013545	15170.0	Mm.271799	NM_013545	ENSMUSG00000004266	Ptpn6	70Z-SHP|Hcph|PTPTY-42|Ptp1C|SH-PTP1|SHP-1|hcp|me	protein tyrosine phosphatase, non-receptor type 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-47265345-4	chr13	47265259	47265459	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	71356.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-40531630-4	chr3	40531564	40531764	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-8752.0	NR_040445	100040882.0	Mm.272869	NR_040445	ENSMUSG00000037884	1700017G19Rik	-	RIKEN cDNA 1700017G19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118873464-3	chr9	118873428	118873628	+	649.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 11 of 13)	intron (NM_001113514, intron 11 of 13)	-53008.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	0.613160054859988	1.65440006861079	0.645266432068874	1.17362622357183	0.810077238756393	1.86741170393213	0.648613918863299	1.18119768673913	0.443340217356744	0.769091270030878	0.998431161219273
Merged-chr6-29268661-3	chr6	29268569	29268769	+	946.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3819.0	NM_001190461	69573.0	Mm.45161	NM_023516	ENSMUSG00000043421	Hilpda	2310016C08Rik|AW049004|Hig2	hypoxia inducible lipid droplet associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-57629404-4	chr9	57629275	57629475	+	805.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304761, intron 7 of 14)	intron (NM_001304761, intron 7 of 14)	-8601.0	NM_199222	235416.0	Mm.295630	NM_199222	ENSMUSG00000056271	Lman1l	BC020188|slamp	lectin, mannose-binding 1 like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6243581-2	chr19	6243481	6243681	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_194348, intron 1 of 39)	intron (NM_194348, intron 1 of 39)	1913.0	NM_194348	329015.0	Mm.277384	NM_194348	ENSMUSG00000024773	Atg2a	1810013C15Rik|A830054M12|BC023754|mKIAA0404	autophagy related 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-35718569-3	chr8	35718489	35718689	+	728.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	107970.0	NM_027998	71908.0	Mm.37817	NM_027998	ENSMUSG00000055976	Cldn23	2310014B08Rik	claudin 23	protein-coding	3.30503965518356	3.33231084390143	4.32538189717883	2.59704488699773	1.59142270975958	2.49886040710982	3.32600621510313	1.4002659065027	-1.83366262946742	0.0243592139787981	0.20534646010695
Merged-chr7-64217639-3	chr7	64217540	64217740	+	600.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_018752, exon 11 of 14)	exon (NM_018752, exon 11 of 14)	11834.0	NR_029805	387207.0		NR_029805	ENSMUSG00000065585	Mir211	Mirn211|mir-211|mmu-mir-211	microRNA 211	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-13982416-2	chr10	13982301	13982501	+	785.0	f0_balb.idr|f1_balb.idr	intron (NM_001358782, intron 1 of 9)	intron (NM_001358782, intron 1 of 9)	16022.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-7919199-2	chr14	7919099	7919299	+	826.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_134080, exon 29 of 46)	exon (NM_134080, exon 29 of 46)	74983.0	NM_007870	13421.0	Mm.272258	NM_007870	ENSMUSG00000025279	Dnase1l3	DNasegamma|Dhp2|Lsd	deoxyribonuclease 1-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-21351864-4	chr5	21351760	21351960	+	977.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029195, intron 2 of 18)	MusHAL1|LINE|L1	-20813.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-155486857-2	chr4	155486757	155486957	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4504.0	NM_001160017	14688.0	Mm.2344	NM_008142	ENSMUSG00000029064	Gnb1	AA409223|C77571|Gnb-1	guanine nucleotide binding protein (G protein), beta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85736418-2	chr12	85736318	85736518	+	732.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10121.0	NM_145447	217721.0	Mm.301076	NM_145447	ENSMUSG00000034258	Flvcr2	CCT|Mfsd7c	feline leukemia virus subgroup C cellular receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-98845678-2	chr13	98845578	98845778	+	841.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178716, intron 23 of 23)	intron (NM_178716, intron 23 of 23)	-30229.0	NM_172591	218503.0	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-74650918-2	chr11	74650818	74651018	+	905.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081158, intron 1 of 25)	intron (NM_001081158, intron 1 of 25)	1423.0	NM_001081158	74148.0	Mm.214574	NM_001081158	ENSMUSG00000020741	Cluh	1300001I01Rik|Kiaa0664|mKIAA0664	clustered mitochondria (cluA/CLU1) homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-50613110-3	chr16	50613021	50613221	+	719.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040566, intron 3 of 4)	intron (NR_040566, intron 3 of 4)	-21967.0	NM_027046	69339.0	Mm.422869	NM_027046	ENSMUSG00000050685	Ccdc54	1700007N18Rik|AI644412|BB013989|NYD-SP17	coiled-coil domain containing 54	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-24103063-4	chr16	24102969	24103169	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20379.0	NR_155457	108168278.0	Mm.417246	NR_155457		Gm46545	-	predicted gene, 46545	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101228142-1	chr7	101228042	101228242	+	1000.0	f1_balb.idr	intron (NM_199012, intron 8 of 20)	intron (NM_199012, intron 8 of 20)	73946.0	NM_001111111	73683.0	Mm.275744	NM_001111111	ENSMUSG00000047767	Atg16l2	2410118P20Rik	autophagy related 16-like 2 (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-110258490-3	chr7	110258413	110258613	+	770.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009302, intron 3 of 11)	PB1D10|SINE|Alu	36810.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-17218370-4	chr19	17218266	17218466	+	944.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181348, intron 19 of 19)	intron (NM_181348, intron 19 of 19)	121139.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	5.45135547394726	5.82717038264669	6.56548445330974	5.09037090879678	4.60196069926418	4.21648134586157	4.87740487126611	3.25273774569459	-1.73318498298283	2.04339138981461e-05	0.000828263847803907
Merged-chr15-103182314-4	chr15	103182211	103182411	+	985.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-19027.0	NM_027885	71726.0	Mm.254820	NM_027885	ENSMUSG00000036061	Smug1	1200013B09Rik|A930006H09Rik|C85220	single-strand selective monofunctional uracil DNA glycosylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-4596101-4	chr4	4595991	4596191	+	889.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66633.0	NM_001277919	622019.0	Mm.246123	NM_001277919		Gm11780	-	predicted gene 11780	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70554568-2	chr14	70554468	70554668	+	991.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_021877, exon 2 of 20)	5' UTR (NM_021877, exon 2 of 20)	512.0	NM_021877	15460.0	Mm.7598	NM_021877	ENSMUSG00000022096	Hr	ALUNC|AU|N|ba|bldy|hr|rh|rh-bmh|rhino	hairless	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71465412-2	chr8	71465312	71465512	+	804.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_053162, exon 2 of 2)	exon (NM_053162, exon 2 of 2)	486.0	NM_053162	94065.0	Mm.29489	NM_053162	ENSMUSG00000034880	Mrpl34	0610007O17Rik|D8Bwg1484e	mitochondrial ribosomal protein L34	protein-coding	2.14387630521486	1.19457425471898	2.83211794195296	1.58841401419887	2.16325126081831	1.2012464711296	2.85454569468433	1.59676118711075	0.0400453522170613	0.970939792972926	0.998431161219273
Merged-chr4-154942845-4	chr4	154942755	154942955	+	858.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14778.0	NM_178931	230979.0	Mm.215147	NM_178931	ENSMUSG00000042333	Tnfrsf14	Atar|HveA|Hvem|Tnfrs14	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	protein-coding	3.25334943268134	3.27281700835758	2.62741395822296	3.94257374101722	3.92651817058651	3.40449695447903	2.47369437162568	4.35930622461318	0.538157647815997	0.39123692132065	0.880466534076246
Merged-chr17-64619767-2	chr17	64619667	64619867	+	684.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008549, intron 1 of 21)	intron (NM_008549, intron 1 of 21)	18118.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-38059069-2	chr11	38058969	38059169	+	875.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13B|LTR|ERVK	400080.0	NR_131154	100039148.0	Mm.120467	NR_131154	ENSMUSG00000087388	Gm12128	-	predicted gene 12128	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-46710607-4	chr7	46710487	46710687	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030233)	promoter-TSS (NM_030233)	64.0	NM_030233	78935.0	Mm.289866	NM_030233	ENSMUSG00000006763	Saal1	5031425D22Rik|SPACIA1	serum amyloid A-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-72655366-4	chr10	72655279	72655479	+	889.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293683, intron 1 of 7)	intron (NM_001293683, intron 1 of 7)	533.0	NM_001293683	52696.0	Mm.62876	NM_025635	ENSMUSG00000019923	Zwint	2010007E07Rik|2600001N01Rik|D10Ertd749e|Zwint-1	ZW10 interactor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-115315974-3	chr6	115315885	115316085	+	695.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger7|DNA|TcMar-Tigger	-44966.0	NM_001127330	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-86758776-4	chr11	86758634	86758834	+	902.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1167.0	NM_001356393	67300.0	Mm.254588	NM_001003908	ENSMUSG00000047126	Cltc	3110065L21Rik|CHC|R74732	clathrin, heavy polypeptide (Hc)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-45008300-2	chr13	45008197	45008397	+	648.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-6201.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	0.455234052699569	0.543545118551957	0.296546775444319	1.47147750153513	0.276095605217869	0.30961480147232	0.298920737049118	1.24851123213858	-0.753203924625966	0.680831867230102	0.995813843836398
Merged-chr8-4253136-4	chr8	4253013	4253213	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133968)	promoter-TSS (NM_133968)	11.0	NM_133968	102209.0	Mm.28452	NM_133968	ENSMUSG00000011837	Snapc2	0610007H10Rik|AU015675	small nuclear RNA activating complex, polypeptide 2	protein-coding	4.80633545661614	4.86320812177241	3.98524094366044	4.55227161800965	4.90032344246598	4.89511142042873	3.85698124050193	4.33093650430527	-0.0370414554589315	0.927526411782119	0.998431161219273
Merged-chr5-65198969-3	chr5	65198875	65199075	+	697.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153391)	promoter-TSS (NM_153391)	-721.0	NM_001359880	213081.0	Mm.127550	NM_153391	ENSMUSG00000037890	Wdr19	C330027H04Rik|D330023L08Rik|DYF2|Ift144|PWDMP|mKIAA1638	WD repeat domain 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127342499-4	chr10	127342404	127342604	+	931.525024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010296)	promoter-TSS (NM_010296)	-925.0	NM_010296	14632.0	Mm.391450	NM_010296	ENSMUSG00000025407	Gli1	AV235269|Zfp-5|Zfp5	GLI-Kruppel family member GLI1	protein-coding	2.31335118456578	2.22672581783696	2.50704358077867	2.6168890184396	1.31817000740158	2.61321385273202	2.1698298414475	2.23220956765114	-0.602898629615241	0.50210719418609	0.938849160910864
Merged-chr2-164929242-4	chr2	164929133	164929333	+	997.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17483.0	NM_199027	329559.0	Mm.330776	NM_199027	ENSMUSG00000039834	Zfp335	1810045J01Rik|NIF-1|Nif1|Znf335	zinc finger protein 335	protein-coding	2.30376101954708	1.85698751211211	3.24731659966251	3.22460849505007	2.81164567956508	2.4595614376085	2.7581702256678	2.56335671523363	-0.2776216476367	0.717563716522573	0.998431161219273
Merged-chr10-75222086-4	chr10	75221995	75222195	+	929.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001145826, exon 2 of 19)	5' UTR (NM_001145826, exon 2 of 19)	9705.0	NM_001145826	74392.0	Mm.27716	NM_153406	ENSMUSG00000033444	Specc1l	4930470P14Rik|4932439K10Rik|9530057A13Rik|AI317249|Cytsa|mKIAA0376	sperm antigen with calponin homology and coiled-coil domains 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-40697765-3	chr19	40697665	40697865	+	768.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009848, intron 1 of 9)	intron (NM_009848, intron 1 of 9)	37995.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	1.31927027892095	0.807719517159409	0.794195038247156	1.27746306304519	1.52414252110969	1.03729692230517	1.85500780503267	1.14455776162909	1.4217412871279	0.294802766175198	0.798191705447
Merged-chr1-159198791-4	chr1	159198726	159198926	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-33374.0	NM_001360878	26374.0	Mm.328135	NM_011931	ENSMUSG00000040782	Cop1	AI316802|C80879|Rfwd2	COP1, E3 ubiquitin ligase	protein-coding	2.67847817923382	2.3303509328523	1.18673541182615	2.69797718720216	1.84349751003468	1.50369973580546	1.19379122222842	2.39372531017581	-1.25952412550007	0.239795626177651	0.736450833501568
Merged-chr10-117793961-2	chr10	117793861	117794061	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1256.0	NM_134010	103468.0	Mm.12568	NM_134010	ENSMUSG00000052798	Nup107	AW541137|C76801	nucleoporin 107	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-93793521-3	chr13	93793419	93793619	+	687.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009712, intron 2 of 7)	intron (NM_009712, intron 2 of 7)	2742.0	NR_049198	100885837.0		NR_049198	ENSMUSG00000093480	Mir5624	Gm25075|mir-5624|mmu-mir-5624	microRNA 5624	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-83568313-4	chr9	83568214	83568414	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172507, intron 1 of 3)	intron (NM_172507, intron 1 of 3)	19976.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	5.52445264631491	4.81730211565163	5.58420968621539	5.02540072811779	4.39939111472304	4.94550607315972	4.88299850626249	4.86709703374119	-0.592921472949994	0.0747809168752278	0.414229658665274
Merged-chr16-66135102-2	chr16	66135002	66135202	+	613.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	319469.0	NM_028572	73569.0	Mm.25670	NM_028572	ENSMUSG00000091243	Vgll3	1700110N18Rik|4832416J22|C80713|Vgl-3|Vito-2	vestigial like family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-48409045-4	chr17	48408954	48409154	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357903)	promoter-TSS (NM_001357903)	766.0	NM_001110832	18044.0	Mm.4929	NM_010913	ENSMUSG00000023994	Nfya	AA407810|Cbf-b|SEZ-10|SEZ10	nuclear transcription factor-Y alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-73876546-4	chr12	73876433	73876633	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-24791.0	NM_001313920	15251.0	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-145670942-4	chr3	145670839	145671039	+	869.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	A-rich|Low_complexity|Low_complexity	-20954.0	NM_010516	16007.0	Mm.1231	NM_010516	ENSMUSG00000028195	Cyr61	AI325051|CCN1|Igfbp10	cysteine rich protein 61	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-63392510-2	chr4	63392410	63392610	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001045514, intron 3 of 21)	intron (NM_001045514, intron 3 of 21)	5730.0	NM_001305432	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-11264827-2	chr12	11264727	11264927	+	928.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177331, intron 1 of 13)	intron (NM_177331, intron 1 of 13)	960.0	NM_177331	209334.0	Mm.215295	NM_177331	ENSMUSG00000051235	Gen1	5830483C08Rik	GEN1, Holliday junction 5' flap endonuclease	protein-coding	0.0419245042915435	0.39265728506757	0.483057671170314	0.0482253233818694	0.498412032575285	0.399872678072733	0.0531272701898846	0.0488901963645623	0.0751582094496608	0.971500539355291	1
Merged-chr5-140731246-4	chr5	140731130	140731330	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173405, intron 2 of 7)	intron (NM_173405, intron 2 of 7)	7103.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-64929243-4	chr1	64929142	64929342	+	962.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039493, intron 2 of 7)	RMER1B|Other|Other	27582.0	NM_001039493	241075.0	Mm.239534	NM_175509	ENSMUSG00000051344	Plekhm3	9430067K14Rik|A230102O09Rik|AI449570|DAPR|Plekhm1l	pleckstrin homology domain containing, family M, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-21299947-4	chr14	21299847	21300047	+	892.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134079, intron 6 of 10)	intron (NM_134079, intron 6 of 10)	-199823.0	NM_001205241	54169.0	Mm.248967	NM_017479	ENSMUSG00000021767	Kat6b	AI507552|B130044K16Rik|MYST-4|Morf|Myst4|mKIAA0383|qkf|querkopf	K(lysine) acetyltransferase 6B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-98430888-2	chr7	98430788	98430988	+	547.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9528.0	NM_001130693	14918.0	Mm.389928	NM_001034890	ENSMUSG00000074003	Gucy2d	-	guanylate cyclase 2d	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-47541883-4	chr14	47541783	47541983	+	930.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172599, exon 10 of 10)	3' UTR (NM_172599, exon 10 of 10)	26551.0	NM_172599	100504663.0	Mm.287279	NM_172599	ENSMUSG00000037526	Atg14	4832427M01|Atg14L|D14Ertd114e|D14Ertd436e	autophagy related 14	protein-coding	1.09810847801639	0.635489698849498	0.962815052268304	1.26866667144322	0.761599946469692	0.637532666550632	0.970985717799123	1.2768672712823	-0.364049908319977	0.807709077123382	1
Merged-chr3-96938931-4	chr3	96938824	96939024	+	834.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12873.0	NM_008123	14616.0	Mm.258183	NM_008123	ENSMUSG00000049908	Gja8	Aey5|Cnx50|Cx50|Lop10	gap junction protein, alpha 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-46040999-3	chr4	46040899	46041099	+	685.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021883, intron 1 of 9)	MIR3|SINE|MIR	1777.0	NM_021883	21916.0	Mm.249594	NM_021883	ENSMUSG00000028328	Tmod1	E-Tmod|Tmod	tropomodulin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-26604181-3	chr19	26604077	26604277	+	807.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011416)	promoter-TSS (NM_011416)	-983.0	NM_011416	67155.0	Mm.491146	NM_011416	ENSMUSG00000024921	Smarca2	2610209L14Rik|SNF2alpha|Snf2l2|brahma|brm	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-31408332-4	chr3	31408226	31408426	+	908.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER5|LTR|ERV1	-98007.0	NM_172861	241919.0	Mm.285366	NM_172861	ENSMUSG00000069072	Slc7a14	A930013N06|BC061928	solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-43368663-4	chr11	43368504	43368704	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5857.0	NR_029558	387164.0		NR_029558	ENSMUSG00000065601	Mir146	Mirn146|miR-146a|mmu-mir-146	microRNA 146	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-26639422-4	chr14	26639335	26639535	+	902.3250119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007479, intron 1 of 5)	intron (NM_007479, intron 1 of 5)	1301.0	NM_007479	11843.0	Mm.297768	NM_007479	ENSMUSG00000021877	Arf4	AA407803	ADP-ribosylation factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-140133230-2	chr7	140133130	140133330	+	694.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153783, intron 6 of 6)	intron (NM_153783, intron 6 of 6)	-4334.0	NM_199301	212508.0	Mm.296088	NM_199301	ENSMUSG00000039018	Mtg1	Gm169|Gtpbp7	mitochondrial ribosome-associated GTPase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-92674219-2	chr16	92674119	92674319	+	824.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111022, intron 4 of 6)	intron (NM_001111022, intron 4 of 6)	23110.0	NM_001111023	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-38354341-6	chr18	38354227	38354427	+	940.616699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15334.0	NM_011937	26384.0	Mm.22374	NM_011937	ENSMUSG00000052102	Gnpda1	GNPDA|Gnp1|Gnpi|oscillin	glucosamine-6-phosphate deaminase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-143154422-2	chr4	143154322	143154522	+	641.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001256380, intron 6 of 7)	intron (NM_001256380, intron 6 of 7)	-18260.0	NR_105988	102465618.0		NR_105988	ENSMUSG00000106597	Mir7021	mmu-mir-7021	microRNA 7021	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-90973433-4	chr1	90973341	90973541	+	979.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3821.0	NM_008998	19329.0	Mm.279780	NM_008998	ENSMUSG00000026304	Rab17	AW413472	RAB17, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-99965798-4	chr12	99965724	99965924	+	969.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_146037, exon 2 of 3)	5' UTR (NM_146037, exon 2 of 3)	1325.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-90468975-2	chr6	90468875	90469075	+	575.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355668, intron 2 of 2)	intron (NM_001355668, intron 2 of 2)	6399.0	NM_023184	66277.0	Mm.38343	NM_023184	ENSMUSG00000030087	Klf15	1810013I09Rik|AV048136|AW494632|CKLF|KKLF	Kruppel-like factor 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-132248640-2	chr2	132248540	132248740	+	560.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001141971)	promoter-TSS (NM_001141971)	-852.0	NM_001141971	70612.0	Mm.30116	NM_027478	ENSMUSG00000027341	Tmem230	5730494N06Rik|AA407821	transmembrane protein 230	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-59459493-4	chr4	59459411	59459611	+	937.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Zaphod|DNA|hAT-Tip100	-20878.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	2.64994021628359	2.20771972019692	3.02296513760461	2.93357283054741	1.48758240513685	1.14367972346898	1.1067418096871	1.07349131344554	-4.56567079238391	0.000260140339119595	0.00657548551002155
Merged-chr3-109031661-3	chr3	109031542	109031742	+	979.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-4035.0	NM_001163567	329739.0	Mm.69013	NM_001163567	ENSMUSG00000040339	Fam102b	1600010D10Rik|B430201A12Rik	family with sequence similarity 102, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-76897146-4	chr8	76897045	76897245	+	974.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028579, intron 1 of 1)	intron (NR_028579, intron 1 of 1)	3476.0	NR_028579	102640923.0	Mm.367571	NR_028579	ENSMUSG00000074235	Gm10649	-	predicted gene 10649	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-65090586-4	chr1	65090556	65090756	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER31B|LTR|ERV1	-8366.0	NM_144761	12965.0	Mm.440053	NM_144761	ENSMUSG00000073658	Crygb	Cryg-3|DGcry-3|Nop	crystallin, gamma B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-4910964-2	chr18	4910864	4911064	+	918.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	98478.0	NR_045881	100038439.0	Mm.387569	NR_045881	ENSMUSG00000097043	Gm10556	-	predicted gene 10556	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-87407282-1	chr3	87407182	87407382	+	788.0	f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-28500.0	NM_001113238	329693.0	Mm.331122	NM_183222	ENSMUSG00000048031	Fcrl5	Fcrh3|mBXMH2	Fc receptor-like 5	protein-coding	2.08533362059089	2.24473365837546	1.18213381033274	1.73329709720083	2.00903711770721	2.36928101054566	1.18781195257032	2.21372091700297	0.379724347521124	0.726484337396776	0.998431161219273
Merged-chr13-81783774-4	chr13	81783689	81783889	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007684, intron 1 of 4)	CpG	542.0	NM_007684	12626.0	Mm.12481	NM_007684	ENSMUSG00000021537	Cetn3	MmCEN3	centrin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-118296019-1	chr4	118295919	118296119	+	746.0	f0_balb.idr	Intergenic	Intergenic	-4622.0	NM_011213	19268.0	Mm.29855	NM_011213	ENSMUSG00000033295	Ptprf	AA591035|LAR|LARS|RPTP-LAR	protein tyrosine phosphatase, receptor type, F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-3251157-3	chr15	3251067	3251267	+	761.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19600.0	NM_001042613	20363.0	Mm.392203	NM_009155	ENSMUSG00000064373	Selenop	AU018766|D15Ucla1|Se-P|Sepp1|selp	selenoprotein P	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-38086243-3	chr5	38086140	38086340	+	647.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359398, intron 1 of 9)	intron (NM_001359398, intron 1 of 9)	47010.0	NM_026959	71116.0	Mm.18959	NM_026959	ENSMUSG00000029125	Stx18	1810035L21Rik|4933425D03Rik|AU041562	syntaxin 18	protein-coding	0.0324512839641062	-0.219131403957839	-0.223755420033246	0.566395897581146	-0.0863999709542755	-0.218088724744068	-0.222735776298009	-0.0603872729552932	-2.0800703206301	0.360738181395753	1
Merged-chr13-60627629-1	chr13	60627529	60627729	+	774.0	f0_c57.idr	intron (NM_134062, intron 2 of 26)	B4A|SINE|B4	25418.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-43398034-4	chr16	43397927	43398127	+	994.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181058, intron 2 of 6)	intron (NM_181058, intron 2 of 6)	22169.0	NR_046026	626693.0	Mm.447083	NR_046026	ENSMUSG00000085499	Gm15713	-	predicted gene 15713	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-95310340-4	chr11	95310252	95310452	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001195004)	promoter-TSS (NM_001195004)	-64.0	NR_155298	102640811.0	Mm.440938	NR_155298		Gm11520	-	predicted gene 11520	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-84545571-4	chr9	84545451	84545651	+	966.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-228847.0	NR_040739	75253.0	Mm.401984	NR_040739	ENSMUSG00000099724	4930554C24Rik	-	RIKEN cDNA 4930554C24 gene	ncRNA	4.62279469421112	4.7219567115231	4.26598339846693	4.24967798651689	3.87668955195369	3.25156091778953	1.75539173904171	2.59178177571468	-1.92861304742869	0.00074625124169674	0.015313892356689
Merged-chr19-40637352-2	chr19	40637252	40637452	+	846.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001304721, intron 1 of 9)	intron (NM_001304721, intron 1 of 9)	-22418.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-31463270-2	chr16	31463170	31463370	+	981.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33494.0	NR_152205	100047123.0	Mm.466711	NR_152205		Gm15743	-	predicted gene 15743	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-25215403-4	chr12	25215296	25215496	+	983.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	86222.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-20640962-4	chr14	20640862	20641062	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	15578.0	NM_021508	59011.0	Mm.439911	NM_021508	ENSMUSG00000068697	Myoz1	2310001N11Rik|AV090278|FATZ|Myoz	myozenin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-121106726-2	chr8	121106626	121106826	+	794.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_172761, intron 2 of 7)	intron (NM_172761, intron 2 of 7)	1653.0	NM_172761	234814.0	Mm.31690	NM_172761	ENSMUSG00000031816	Mthfsd	AW049977|BC052066|C920004D05	methenyltetrahydrofolate synthetase domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25284523-2	chr7	25284423	25284623	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027882, intron 1 of 19)	intron (NM_027882, intron 1 of 19)	2344.0	NM_027882	71722.0	Mm.28833	NM_027882	ENSMUSG00000005442	Cic	1200010B10Rik|mKIAA0306	capicua transcriptional repressor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-56699197-4	chr18	56699097	56699297	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8616.0	NM_010721	16906.0	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80881472-3	chr10	80881379	80881579	+	855.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081688, intron 1 of 17)	B3|SINE|B2	1663.0	NM_001081688	432478.0	Mm.235302	NM_001081688	ENSMUSG00000059406	Tmprss9	Serase-1B	transmembrane protease, serine 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5793248-5	chr19	5793173	5793373	+	907.580933	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	2708.0	NR_144621	109146451.0		NR_144621		Mascrna	-	Malat1-associated small cytoplasmic RNA	scRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-38348046-2	chr16	38347946	38348146	+	718.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001017429, intron 1 of 2)	intron (NM_001017429, intron 1 of 2)	1047.0	NM_001017429	12856.0	Mm.27396	NM_001017429	ENSMUSG00000046516	Cox17	AI037035	cytochrome c oxidase assembly protein 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-31024851-4	chr2	31024737	31024937	+	687.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42558.0	NM_028846	74270.0	Mm.346654	NM_028846	ENSMUSG00000026854	Usp20	1700055M05Rik|AI467231|Vdu2	ubiquitin specific peptidase 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114568928-6	chr11	114568809	114569009	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-99634.0	NM_023372	67671.0	Mm.238817	NM_023372	ENSMUSG00000057322	Rpl38	0610025G13Rik|Rbt|Ts|Tss	ribosomal protein L38	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34851414-1	chr17	34851314	34851514	+	732.0	f1_c57bl6.idr	intron (NM_138580, intron 2 of 10)	B1F|SINE|Alu	1023.0	NM_001045864	27632.0	Mm.653	NM_138580	ENSMUSG00000024369	Nelfe	D17H6S45|NELF-E|RD|Rdbp	negative elongation factor complex member E, Rdbp	protein-coding	0.781318940870576	0.718597579578082	0.687819812477046	0.990972826794454	0.433575265526079	1.92322757740694	0.694678070526838	0.45056857960623	1.08533782965226	0.479320178420135	0.928092227925527
Merged-chr17-83269611-2	chr17	83269511	83269711	+	636.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	54328.0	NM_134117	106522.0	Mm.311974	NM_134117	ENSMUSG00000024247	Pkdcc	AI115348|AW548124|Adtk1|ESTM17|MAd1|Sgk493|Vlk|X83346	protein kinase domain containing, cytoplasmic	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34026271-2	chr17	34026173	34026373	+	935.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_013543, intron 8 of 8)	intron (NM_013543, intron 8 of 8)	-1181.0	NR_029800	723823.0		NR_029800	ENSMUSG00000065555	Mir219a-1	Mir219-1|Mirn219-1|mir-219a-1|mmu-mir-219a-1	microRNA 219a-1	ncRNA	1.79013518562434	1.63818313413396	0.985186378272302	0.968268047927363	2.26790689337135	1.93401185240113	0.989943416382681	2.00652004746388	1.44031399683583	0.255705146160268	0.754166751138371
Merged-chr8-111343370-4	chr8	111343263	111343463	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5158.0	NM_029005	74568.0	Mm.207971	NM_029005	ENSMUSG00000012519	Mlkl	9130019I15Rik	mixed lineage kinase domain-like	protein-coding	3.90821347411397	3.16058924033345	5.27053644870347	4.84749833756701	3.88466709747136	3.03871139244161	3.06727668134671	4.07747036140341	-1.23253869931214	0.0274408074792298	0.223058813100135
Merged-chr3-52105041-4	chr3	52104938	52105138	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001004176)	promoter-TSS (NM_001004176)	-32.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-31198653-4	chr5	31198474	31198674	+	888.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_175311)	TTS (NM_175311)	3468.0	NM_001177901	101023.0	Mm.45033	NM_175311	ENSMUSG00000043059	Zfp513	AW990386|D430028M17Rik|Znf513	zinc finger protein 513	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4623256-2	chr16	4623156	4623356	+	649.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025571, intron 1 of 4)	intron (NM_025571, intron 1 of 4)	1690.0	NM_025571	66449.0	Mm.354760	NM_025571	ENSMUSG00000014301	Pam16	2010110I09Rik|AV006767|CGI-136|Magmas|Tim16|Timm16	presequence translocase-asssociated motor 16 homolog (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-39483800-2	chr18	39483700	39483900	+	737.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008173, intron 1 of 7)	intron (NM_008173, intron 1 of 7)	3445.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0.495079008458959	0.25525813139762	0.899778619586022	0.657104185811966	0.609188981548674	0.256620735955498	0.250548827092497	0.406602915684277	-1.44146219043073	0.434422112208746	1
Merged-chr2-167978614-3	chr2	167978612	167978812	+	750.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011201, exon 9 of 9)	3' UTR (NM_011201, exon 9 of 9)	31881.0	NM_001080708	69553.0	Mm.68454	NM_001080708	ENSMUSG00000074577	Ripor3	2310033K02Rik|Fam65c|Gm124	RIPOR family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-23043963-1	chr19	23043863	23044063	+	670.0	f1_c57bl6.idr	Intergenic	Intergenic	-97263.0	NM_010638	16601.0	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|Gm9971	Kruppel-like factor 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-94524795-2	chr16	94524695	94524895	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007834, intron 1 of 7)	intron (NM_007834, intron 1 of 7)	1834.0	NM_007834	13185.0	Mm.7472	NM_007834	ENSMUSG00000022898	Dscr3	AW538125|Dcra	DSCR3 arrestin fold containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-8898483-3	chr10	8898383	8898583	+	925.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12413.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-43496075-4	chr19	43495984	43496184	+	911.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_031396, exon 11 of 11)	3' UTR (NM_031396, exon 11 of 11)	28521.0	NM_010324	14718.0	Mm.19039	NM_010324	ENSMUSG00000025190	Got1	AI789014|Got-1|cAspAT|cCAT	glutamic-oxaloacetic transaminase 1, soluble	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-110945673-2	chr13	110945573	110945773	+	890.1666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41827.0	NR_131194	102636142.0	Mm.417611	NR_131194		4930526H09Rik	-	RIKEN cDNA 4930526H09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-41857739-1	chr5	41857639	41857839	+	544.0	f0_balb.idr	Intergenic	Intergenic	-13424.0	NM_001081422	665775.0	Mm.158726	NM_001081422	ENSMUSG00000061755	Bod1l	A230054D04Rik|AI853319|FAM44A|mKIAA1327	biorientation of chromosomes in cell division 1-like	protein-coding	-0.377928363431773	-0.363861055316338	-0.368460024677783	0.18081660928027	-0.377047628793416	-0.362825643339324	-0.36744489430903	0.378583324410883	0.610364511645013	0.818420221416969	1
Merged-chr3-27234683-4	chr3	27234585	27234785	+	998.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 3 of 4)	intron (NM_178772, intron 3 of 4)	51681.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127229654-2	chr10	127229554	127229754	+	665.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008447, exon 28 of 28)	3' UTR (NM_008447, exon 28 of 28)	-18032.0	NM_001359280	117150.0	Mm.22682	NM_054097	ENSMUSG00000025417	Pip4k2c	Pip5k2c	phosphatidylinositol-5-phosphate 4-kinase, type II, gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80598197-4	chr10	80598112	80598312	+	957.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6B|LTR|ERVK	-4668.0	NM_001100606	100113398.0	Mm.273170	NM_001100606	ENSMUSG00000113640	Adat3	A430024H01Rik	adenosine deaminase, tRNA-specific 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-14869968-4	chr3	14869866	14870066	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007606, intron 5 of 6)	intron (NM_007606, intron 5 of 6)	6428.0	NM_007606	12350.0	Mm.300	NM_007606	ENSMUSG00000027559	Car3	BB219044|Ca3|Car-3	carbonic anhydrase 3	protein-coding	2.6152297286516	2.54185348404418	2.06610075804983	2.67204058053302	2.38903193417383	1.75494820913771	2.47733425091028	2.29063861504401	-0.538308423406098	0.511723604791294	0.94512318675548
Merged-chr10-24152956-2	chr10	24152856	24153056	+	746.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016797, intron 1 of 9)	intron (NM_016797, intron 1 of 9)	3639.0	NM_016797	53331.0	Mm.248042	NM_016797	ENSMUSG00000019998	Stx7	AI315064|AI317144|AW107239|Syn7	syntaxin 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-85592755-3	chr9	85592670	85592870	+	930.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	156564.0	NM_001081282	108837.0	Mm.22315	NM_175371	ENSMUSG00000035941	Ibtk	5430411K16Rik|AA409502|BTKI|mKIAA1417	inhibitor of Bruton agammaglobulinemia tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-28146147-4	chr3	28146083	28146283	+	894.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-117031.0	NM_001163007	665113.0	Mm.126193	NM_026910	ENSMUSG00000027692	Tnik	1500031A17Rik|4831440I19Rik|AI451411|C530008O15Rik|C630040K21Rik	TRAF2 and NCK interacting kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33771766-2	chr16	33771666	33771866	+	571.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TGGA)n|Simple_repeat|Simple_repeat	-22271.0	NM_010739	17063.0	Mm.3177	NM_010739	ENSMUSG00000022824	Muc13	114/A10|14/A10|AI159736|Lrrp|Ly64|NJ-1	mucin 13, epithelial transmembrane	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69794504-1	chr11	69794404	69794604	+	542.0	f1_balb.idr	intron (NM_009601, intron 3 of 10)	B3|SINE|B2	1433.0	NM_009601	11443.0	Mm.86425	NM_009601	ENSMUSG00000041189	Chrnb1	Achr-2|Acrb	cholinergic receptor, nicotinic, beta polypeptide 1 (muscle)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-51939272-1	chr6	51939172	51939372	+	550.5	f0_balb.idr	intron (NM_018773, intron 4 of 12)	intron (NM_018773, intron 4 of 12)	73277.0	NM_018773	54353.0	Mm.221479	NM_018773	ENSMUSG00000059182	Skap2	2610021A10Rik|AA960083|BB137539|RA70|SKAP-HOM|Saps|Scap2|mSKAP55R	src family associated phosphoprotein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-84199397-1	chr18	84199297	84199497	+	685.0	f0_balb.idr	Intergenic	Intergenic	111239.0	NM_146090	225791.0	Mm.147052	NM_146090	ENSMUSG00000049090	Zadh2	C530046K17Rik|PTGR-3|Pthr3	zinc binding alcohol dehydrogenase, domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124000021-2	chr5	123999921	124000121	+	765.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_145070, intron 22 of 31)	intron (NM_145070, intron 22 of 31)	3169.0	NR_105999	102465625.0		NR_105999	ENSMUSG00000098454	Mir7032	Gm27309|mmu-mir-7032	microRNA 7032	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-81571755-4	chr18	81571649	81571849	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	420331.0	NR_039589	100628596.0		NR_039589	ENSMUSG00000093036	Mir5127	mmu-mir-5127|mu-mir-5127	microRNA 5127	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-88205671-2	chr1	88205571	88205771	+	572.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008299)	promoter-TSS (NM_008299)	77.0	NM_008299	15504.0	Mm.439983	NM_008299	ENSMUSG00000081984	Dnajb3	Hsj3|MSJ-1|Msj1	DnaJ heat shock protein family (Hsp40) member B3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133692354-2	chr4	133692267	133692467	+	737.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080819, intron 10 of 19)	intron (NM_001080819, intron 10 of 19)	-19201.0	NM_001356466	230801.0	Mm.217004	NM_178698	ENSMUSG00000043257	Pigv	B330013B03|D430024F16Rik	phosphatidylinositol glycan anchor biosynthesis, class V	protein-coding	0.197420780506904	1.37988932865531	0.218572646268718	0.728098986717595	0.199419772442305	0.969965023367527	0.220798088046329	0.212097569019952	-1.3797421737397	0.48546904074963	1
Merged-chr1-165645885-2	chr1	165645785	165645985	+	954.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11344.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-63024003-4	chr10	63023911	63024111	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001079824)	promoter-TSS (NM_001079824)	-162.0	NM_001079824	432467.0	Mm.274784	NM_001079824	ENSMUSG00000020069	Hnrnph3	AA693301|AI666703|Hnrph3	heterogeneous nuclear ribonucleoprotein H3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-83997932-3	chr17	83997827	83998027	+	847.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_130994)	promoter-TSS (NR_130994)	-625.0	NR_130994	78148.0	Mm.243918	NR_130994		8430430B14Rik	-	RIKEN cDNA 8430430B14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-11005356-2	chr16	11005256	11005456	+	641.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1C|Other|Other	-3542.0	NR_040518	100043147.0	Mm.489001	NR_040518	ENSMUSG00000097056	Gm4262	-	predicted gene 4262	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-150834785-2	chr2	150834685	150834885	+	855.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_151505, intron 11 of 12)	intron (NR_151505, intron 11 of 12)	7785.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-86925268-2	chr4	86925164	86925364	+	592.5	f0_balb.idr|f1_balb.idr	intron (NM_001290543, intron 5 of 5)	intron (NM_001290543, intron 5 of 5)	50850.0	NM_139306	230379.0	Mm.45019	NM_139306	ENSMUSG00000038007	Acer2	2410116I05Rik|Asah3l|CRG-L1|maCER2	alkaline ceramidase 2	protein-coding	2.55170575391647	1.52351719558155	2.76614371673199	2.59041007928853	2.57286387736448	2.22686811658761	2.68607540749513	3.22251466803415	0.582522023543804	0.475594553274456	0.927343103251982
Merged-chr19-17130628-3	chr19	17130548	17130748	+	720.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181348, intron 9 of 19)	intron (NM_181348, intron 9 of 19)	174530.0	NM_181348	353211.0	Mm.257354	NM_181348	ENSMUSG00000039126	Prune2	6330414G02Rik|A230083H22Rik|A330102H22Rik|Bmcc1|mKIAA0367	prune homolog 2	protein-coding	-1.36015291771705	-1.32842431658676	-1.33874579108173	-1.34722415754512	-1.35969949349639	-1.32618761000664	-1.33640923549635	-0.791042329471244	2.42373733289067	0.484013421080845	1
Merged-chr14-27357351-2	chr14	27357251	27357451	+	787.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289687, intron 1 of 9)	intron (NM_001289687, intron 1 of 9)	-4038.0	NM_001289688	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83673635-4	chr6	83673548	83673748	+	932.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144943, intron 4 of 5)	MLT1I|LTR|ERVL-MaLR	4209.0	NM_144943	246278.0	Mm.136079	NM_144943	ENSMUSG00000034783	Cd207	-	CD207 antigen	protein-coding	-1.84371485578039	-1.81332821174849	-1.82251738371298	-1.83006564316449	-1.84158176955426	-1.81133687985023	-1.5312619047181	-1.82871450833159	1.60090129203521	0.64914985597185	1
Merged-chr15-64241747-2	chr15	64241647	64241847	+	872.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 3 of 28)	ORR1F|LTR|ERVL-MaLR	70926.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52989441-1	chr13	52989341	52989541	+	542.0	f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-8402.0	NM_017373	18030.0	Mm.136604	NM_017373	ENSMUSG00000056749	Nfil3	AV225605|E4BP4	nuclear factor, interleukin 3, regulated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-8639819-2	chr11	8639719	8639919	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 1 of 30)	intron (NM_001083587, intron 1 of 30)	24716.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-19171243-4	chr10	19171153	19171353	+	762.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038022, intron 1 of 1)	intron (NR_038022, intron 1 of 1)	4015.0	NR_038022	100504265.0	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-35194225-2	chr2	35194125	35194325	+	582.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026697, intron 1 of 7)	intron (NM_026697, intron 1 of 7)	6895.0	NM_026697	68365.0	Mm.198264	NM_026697	ENSMUSG00000026878	Rab14	0610030G24Rik|2810475J17Rik|A830021G03Rik|AI314285|AI649155|D030017L14Rik	RAB14, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-24025131-2	chr5	24025026	24025226	+	884.1666869999999	f0_balb.idr|f1_balb.idr	intron (NM_053090, intron 1 of 10)	intron (NM_053090, intron 1 of 10)	5186.0	NM_001310471	84652.0	Mm.304976	NM_053090	ENSMUSG00000028995	Fam126a	AB030242|Drctnnb1a	family with sequence similarity 126, member A	protein-coding	2.66312825369371	1.33987682180907	1.28121384271439	1.23278423269405	3.2313633191025	3.97709439215192	3.98831619056477	2.49519894750384	3.29068234801116	0.0227453121338859	0.195859991614136
Merged-chr2-170345685-4	chr2	170345576	170345776	+	991.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10685.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-15715400-4	chr17	15715312	15715512	+	845.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007690, intron 2 of 35)	B3|SINE|B2	10445.0	NM_007690	12648.0	Mm.8137	NM_007690	ENSMUSG00000023852	Chd1	4930525N21Rik|AI851787|AW555109	chromodomain helicase DNA binding protein 1	protein-coding	3.60686048983849	4.32789588095197	2.88917063410983	2.92309372278827	3.24729745522266	3.86095766268492	2.7758125817433	2.8178726901803	-0.505283068038093	0.423869881276895	0.900955031692486
Merged-chr11-100472801-4	chr11	100472697	100472897	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172565)	promoter-TSS (NM_172565)	-15.0	NM_172565	217194.0	Mm.183320	NM_172565	ENSMUSG00000048732	Klhl11	BC011167	kelch-like 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123707430-2	chr5	123707330	123707530	+	555.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027494, intron 9 of 13)	intron (NM_027494, intron 9 of 13)	13614.0	NM_027494	70650.0	Mm.279427	NM_027494	ENSMUSG00000029427	Zcchc8	5730565F05Rik	zinc finger, CCHC domain containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83659518-3	chr6	83659421	83659621	+	977.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3405.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	2.47700435031959	2.12303776275038	1.52078439807083	2.62261431578083	3.68583979980617	3.72138491862053	3.32388306920241	3.22129469495246	2.25108322605912	0.00139748606394235	0.0255595088341164
Merged-chr5-24652235-4	chr5	24652151	24652351	+	719.729187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6798.0	NR_003953	72252.0	Mm.87446	NR_003953	ENSMUSG00000038165	1700022A21Rik	-	glycerol-3-phosphate dehydrogenase 1-like pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-45653173-4	chr2	45653087	45653287	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	-43418.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-151533823-4	chr2	151533718	151533918	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-8665.0	NR_126058	14225.0	Mm.278458	NM_008019	ENSMUSG00000032966	Fkbp1a	FKBP12|Fkbp|Fkbp1	FK506 binding protein 1a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-61717473-2	chr10	61717373	61717573	+	832.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178058, intron 1 of 9)	L1MB8|LINE|L1	2210.0	NM_001284300	71361.0	Mm.286309	NM_153779	ENSMUSG00000020085	Aifm2	5430437E11Rik|Amid|D730001I10Rik|PRG3	apoptosis-inducing factor, mitochondrion-associated 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80606566-2	chr10	80606466	80606666	+	984.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001100606, exon 2 of 2)	exon (NM_001100606, exon 2 of 2)	-2694.0	NR_105877	102465550.0		NR_105877	ENSMUSG00000099283	Mir6912	Gm27990|mmu-mir-6912	microRNA 6912	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89177377-4	chr3	89177241	89177441	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001309909)	promoter-TSS (NM_001309909)	-50.0	NM_001309910	24045.0	Mm.257052	NM_011886	ENSMUSG00000028049	Scamp3	Sc3	secretory carrier membrane protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-112605959-2	chr12	112605859	112606059	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198411, intron 10 of 22)	intron (NM_198411, intron 10 of 22)	-14088.0	NM_007421	11565.0	Mm.3440	NM_007421	ENSMUSG00000011148	Adssl1	AI528595|Adss|Adss1	adenylosuccinate synthetase like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-52396794-2	chr3	52396694	52396894	+	937.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-120170.0	NR_153344	102631981.0	Mm.394225	NR_153344		Gm30173	-	predicted gene, 30173	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-57623872-2	chr19	57623777	57623977	+	936.5	f0_balb.idr|f1_balb.idr	intron (NM_181415, intron 1 of 28)	intron (NM_181415, intron 1 of 28)	12843.0	NM_181415	226255.0	Mm.245340	NM_181415	ENSMUSG00000054843	Atrnl1	AI504415|AW555641|Alp|Atrnl|Atrnlp	attractin like 1	protein-coding	-1.06143507733505	-1.04162019955508	-1.05291486968025	-1.05819092327156	-0.791893878288663	-1.03917259742211	-0.595621597270265	-1.05784875621095	2.7531441000867	0.384928181925071	1
Merged-chr15-55268754-2	chr15	55268654	55268854	+	932.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38996.0	NM_181277	12818.0	Mm.297859	NM_181277	ENSMUSG00000022371	Col14a1	5730412L22Rik|AW108078	collagen, type XIV, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167634598-4	chr2	167634501	167634701	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2596.0	NM_023230	66589.0	Mm.278783	NM_023230	ENSMUSG00000078923	Ube2v1	0610011J09Rik|AI256840|CROC-1|CROC1|D7Bwg1382e|UEV-1	ubiquitin-conjugating enzyme E2 variant 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-58319418-4	chr13	58319311	58319511	+	763.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175214, intron 10 of 16)	intron (NM_175214, intron 10 of 16)	-6262.0	NR_105788	102465191.0		NR_105788	ENSMUSG00000098258	Mir6369	Gm27615|mmu-mir-6369	microRNA 6369	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-34672160-4	chr7	34672061	34672261	+	974.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16652.0	NM_001360818	233107.0	Mm.76761	NM_146188	ENSMUSG00000030499	Kctd15	BC031749	potassium channel tetramerisation domain containing 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21133184-2	chr9	21133084	21133284	+	567.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-1909.0	NM_001205312	54721.0	Mm.20249	NM_018793	ENSMUSG00000032175	Tyk2	JTK1	tyrosine kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-35027870-4	chr9	35027769	35027969	+	876.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001190912, intron 12 of 15)	intron (NM_001190912, intron 12 of 15)	-88859.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-13591083-3	chr17	13590999	13591199	+	795.277771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37005.0	NR_045437	72578.0	Mm.46549	NR_045436	ENSMUSG00000038347	2700054A10Rik	-	RIKEN cDNA 2700054A10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-33855777-1	chr8	33855677	33855877	+	855.0	f0_balb.idr	intron (NM_001042675, intron 4 of 6)	L1MB4|LINE|L1	74086.0	NM_019733	19663.0	Mm.323997	NM_019733	ENSMUSG00000031586	Rbpms	2010300K22Rik|2700019M19Rik|AU017537|RBP-MS|hermes	RNA binding protein gene with multiple splicing	protein-coding	0.838801114505532	0.55378148946934	0.542044169296812	1.26699542538306	1.64931758267064	0.556400455381607	0.544650016682285	1.27595152291153	1.11981268721941	0.503623393011387	0.939787919021146
Merged-chr7-28387225-2	chr7	28387125	28387325	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026042, intron 3 of 3)	B1_Mus1|SINE|Alu	5465.0	NM_026042	67224.0	Mm.41647	NM_026042	ENSMUSG00000003444	Med29	2810405O22Rik|AU020902|Ixl	mediator complex subunit 29	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-76550615-2	chr12	76550515	76550715	+	641.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153804, intron 1 of 18)	intron (NM_153804, intron 1 of 18)	-2690.0	NR_046044	100504549.0	Mm.440349	NR_046044	ENSMUSG00000112388	AI463170	-	expressed sequence AI463170	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-108842571-2	chr14	108842471	108842671	+	750.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus4|LINE|L1	71668.0	NM_199065	76965.0	Mm.257268	NM_199065	ENSMUSG00000075478	Slitrk1	3200001I04Rik	SLIT and NTRK-like family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-79356364-4	chr12	79356295	79356495	+	944.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	59044.0	NM_001252562	19363.0	Mm.341756	NM_009014	ENSMUSG00000059060	Rad51b	AI553500|R51H2|Rad51l1|mREC2	RAD51 paralog B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-87203281-1	chr12	87203181	87203381	+	542.0	f1_balb.idr	intron (NM_001290288, intron 2 of 3)	intron (NM_001290288, intron 2 of 3)	2738.0	NM_001290288	238333.0	Mm.302304	NM_001290288	ENSMUSG00000090812	Samd15	Gm263	sterile alpha motif domain containing 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-24709477-4	chr18	24709396	24709596	+	943.283325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_175276, exon 1 of 27)	5' UTR (NM_175276, exon 1 of 27)	873.0	NM_001289655	225288.0	Mm.329322	NM_175276	ENSMUSG00000034295	Fhod3	A930009H06Rik|FHOS2|mKIAA1695	formin homology 2 domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-32116307-2	chr16	32116207	32116407	+	782.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16505.0	NM_025892	66994.0	Mm.22990	NM_025892	ENSMUSG00000035790	Cep19	1500031L02Rik|AI428934|AL022620	centrosomal protein 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-57378155-1	chr1	57378055	57378255	+	784.0	f0_c57.idr	promoter-TSS (NR_037999)	promoter-TSS (NR_037999)	535.0	NM_028546	73467.0	Mm.263673	NM_028546	ENSMUSG00000038323	1700066M21Rik	AI428479	RIKEN cDNA 1700066M21 gene	protein-coding	3.57943477613722	4.33726060153354	3.80563482904297	4.24806509160532	4.37868472904622	3.60374963287109	3.98159796217536	4.40873805489951	0.16261517573651	0.721262486705078	0.998431161219273
Merged-chr14-40968333-2	chr14	40968233	40968433	+	720.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1437.0	NM_145928	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-18717312-4	chr13	18717213	18717413	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172120)	promoter-TSS (NM_172120)	21.0	NM_172120	218035.0	Mm.27389	NM_172120	ENSMUSG00000041236	Vps41	AI317346|Vam2|mVam2	VPS41 HOPS complex subunit	protein-coding	2.55637182277264	2.88629955965393	1.42380770859332	2.55285463481071	1.68730611890039	1.19704011904452	2.26195567091834	1.13548516969219	-1.93439179729865	0.0685322335501845	0.392669406941315
Merged-chr7-141634659-2	chr7	141634559	141634759	+	593.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001330001, intron 32 of 33)	intron (NM_001330001, intron 32 of 33)	13958.0	NR_106030	102466798.0		NR_106030	ENSMUSG00000098759	Mir7063	Gm27654|mmu-mir-7063	microRNA 7063	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-116124396-1	chr3	116124296	116124496	+	591.0	f0_balb.idr	exon (NM_011693, exon 4 of 9)	exon (NM_011693, exon 4 of 9)	5292.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-13462165-2	chr8	13462065	13462265	+	800.666626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001143671)	TTS (NM_001143671)	26706.0	NM_001143672	272465.0	Mm.250502	NM_001143671	ENSMUSG00000038457	Tmem255b	Fam70b|Gm687	transmembrane protein 255B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-30963544-2	chr5	30963444	30963644	+	793.375	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3217.0	NM_016703	50907.0	Mm.272414	NM_016703	ENSMUSG00000045302	Preb	C85705	prolactin regulatory element binding	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-60913804-4	chr11	60913699	60913899	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025294)	promoter-TSS (NM_025294)	-7.0	NM_025294	24083.0	Mm.22780	NM_025294	ENSMUSG00000018931	Natd1	AI256713|F3-2|Gm16515|Gtlf3b	N-acetyltransferase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-128098323-2	chr7	128098223	128098423	+	786.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008401, intron 12 of 29)	B2_Mm2|SINE|B2	-31245.0	NM_021334	16411.0	Mm.22378	NM_021334	ENSMUSG00000030789	Itgax	AI449405|Cd11c|Cr4|N418	integrin alpha X	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6285241-2	chr19	6285141	6285341	+	903.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010119, intron 2 of 4)	intron (NM_010119, intron 2 of 4)	8345.0	NM_010119	13660.0	Mm.30169	NM_010119	ENSMUSG00000024772	Ehd1	AA409636|Past1|RME-1	EH-domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-38352147-4	chr6	38352025	38352225	+	994.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028864, intron 1 of 8)	intron (NM_028864, intron 1 of 8)	2478.0	NM_001347122	78781.0	Mm.25243	NM_028421	ENSMUSG00000029826	Zc3hav1	1200014N16Rik|2900058M19Rik|9130009D18Rik|9830115L13Rik|ARTD13|D6Bwg1452e|ZAP	zinc finger CCCH type, antiviral 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-37239420-2	chr12	37239320	37239520	+	833.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2219.0	NM_178767	319660.0	Mm.485540	NM_178767	ENSMUSG00000050103	Agmo	A530016O06Rik|AI790538|Tmem195	alkylglycerol monooxygenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-111655778-1	chr8	111655678	111655878	+	653.0	f1_c57bl6.idr	intron (NM_001358993, intron 1 of 3)	intron (NM_001358993, intron 1 of 3)	12335.0	NM_011742	22640.0	Mm.4184	NM_011742	ENSMUSG00000055835	Zfp1	Fnp-1|Zfp-1|mkr-1	zinc finger protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80903957-2	chr10	80903857	80904057	+	594.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_010722, exon 9 of 12)	exon (NM_010722, exon 9 of 12)	2455.0	NM_001347140	16907.0	Mm.7362	NM_010722	ENSMUSG00000062075	Lmnb2	-	lamin B2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-57541137-4	chr8	57541027	57541227	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167981, intron 6 of 11)	intron (NM_001167981, intron 6 of 11)	29284.0	NM_008252	97165.0	Mm.276881	NM_008252	ENSMUSG00000054717	Hmgb2	C80539|HMG-2|Hmg2	high mobility group box 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-47841036-4	chr6	47840929	47841129	+	852.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027477, intron 2 of 5)	intron (NM_027477, intron 2 of 5)	5368.0	NM_173034	272347.0	Mm.169059	NM_027477	ENSMUSG00000062519	Zfp398	5730513I23Rik	zinc finger protein 398	protein-coding	3.17064654987628	2.70299038073057	2.36523519603319	1.33221191324031	3.14414724631887	2.72375869799797	2.38482568889585	1.33843325884059	-0.00143682357864688	0.998808711320311	0.999479715059607
Merged-chr9-110873486-2	chr9	110873342	110873542	+	992.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_146260, intron 3 of 5)	intron (NM_146260, intron 3 of 5)	6641.0	NM_146260	20776.0	Mm.390229	NM_146260	ENSMUSG00000049555	Tmie	5131400L21Rik|Mm.87012|sr	transmembrane inner ear	protein-coding	1.23247468517603	1.41877912655639	2.11386162098882	0.726536215403796	0.703633120238126	0.766166876850299	2.13407826531797	0.96550868759791	-0.485107125375314	0.733934761222841	0.998431161219273
Merged-chr3-89905206-4	chr3	89905122	89905322	+	920.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010559, intron 1 of 9)	intron (NM_010559, intron 1 of 9)	7974.0	NM_001310676	16194.0	Mm.2856	NM_010559	ENSMUSG00000027947	Il6ra	CD126|IL-6R|IL-6R-alpha|IL-6RA|Il6r	interleukin 6 receptor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-158310884-2	chr2	158310798	158310998	+	739.916626	f0_c57.idr|f1_c57bl6.idr	intron (NM_008489, intron 3 of 14)	intron (NM_008489, intron 3 of 14)	4405.0	NM_008489	16803.0	Mm.218846	NM_008489	ENSMUSG00000016024	Lbp	Bpifd2|Ly88	lipopolysaccharide binding protein	protein-coding	3.10094743377883	4.02218322645648	3.51593977134116	3.87095298699534	1.04832408469429	1.24639146750975	1.18736097143764	1.13318760290692	-6.79577831021263	5.48201516765471e-09	7.14926282407839e-07
Merged-chr10-19184993-2	chr10	19184893	19185093	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_038022, intron 1 of 1)	intron (NR_038022, intron 1 of 1)	17755.0	NR_038022	100504265.0	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	1.80945321587278	1.7613889147442	2.65153804181969	1.79026667026677	1.58133769534377	1.12980060889997	1.9870172382413	1.3134123914408	-1.48682295952884	0.166242081288953	0.631812823040522
Merged-chr6-65161956-2	chr6	65161856	65162056	+	705.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17226.0	NM_019455	54486.0	Mm.410688	NM_019455	ENSMUSG00000029919	Hpgds	H-PGDS|Ptgds2	hematopoietic prostaglandin D synthase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-47190227-1	chr14	47190127	47190327	+	602.0	f1_balb.idr	promoter-TSS (NM_008102)	promoter-TSS (NM_008102)	-814.0	NM_008102	14528.0	Mm.10651	NM_008102	ENSMUSG00000037580	Gch1	GTP-CH|GTP-CH-I|GTPCH|Gch	GTP cyclohydrolase 1	protein-coding	-0.178732894770167	-0.165082558307397	0.271554881761667	-0.173019855362327	-0.177884408462849	0.322025286946463	0.280719004563031	-0.172417396733351	1.13189990468618	0.636462842883931	1
Merged-chr3-65551349-4	chr3	65551251	65551451	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178892, intron 4 of 5)	intron (NM_178892, intron 4 of 5)	-21937.0	NR_027955	71004.0	Mm.475465	NM_001033527	ENSMUSG00000074580	4931440P22Rik	-	RIKEN cDNA 4931440P22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-35959190-5	chr18	35959021	35959221	+	736.93335	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5709.0	NM_001289602	74002.0	Mm.196944	NM_028707	ENSMUSG00000024347	Psd2	6330404E20Rik|AW125584|EFA6C	pleckstrin and Sec7 domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97293298-3	chr6	97293134	97293334	+	737.616638	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 22 of 23)	intron (NM_145148, intron 22 of 23)	-40454.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	1.72324312281966	0.861625228669834	1.49992310255738	1.45332585697716	1.57835817553072	0.864773334616034	1.51302312805639	0.83839228038164	-0.630215105005581	0.652594634801392	0.986434615290108
Merged-chr17-35534457-2	chr17	35534357	35534557	+	666.666687	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_020576, exon 2 of 2)	3' UTR (NM_020576, exon 2 of 2)	1256.0	NM_020576	57390.0	Mm.34201	NM_020576	ENSMUSG00000024409	Psors1c2	AI448740|Pcg|SPR1	psoriasis susceptibility 1 candidate 2 (human)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-87441105-2	chr16	87441005	87441205	+	903.375	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016924)	promoter-TSS (NM_016924)	-513.0	NM_016924	53858.0	Mm.162406	NM_016924	ENSMUSG00000041079	Rwdd2b	ORF5	RWD domain containing 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-70648605-2	chr18	70648505	70648705	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	80313.0	NM_010773	17191.0	Mm.322	NM_010773	ENSMUSG00000024513	Mbd2	MBD2a	methyl-CpG binding domain protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-99222161-2	chr5	99222061	99222261	+	751.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_181318, intron 12 of 13)	intron (NM_181318, intron 12 of 13)	30766.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-15889061-3	chr16	15888978	15889178	+	867.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_146068)	TTS (NM_146068)	1792.0	NM_007679	12609.0	Mm.347407	NM_007679	ENSMUSG00000071637	Cebpd	c/EBPdelta	CCAAT/enhancer binding protein (C/EBP), delta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141465842-2	chr7	141465742	141465942	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025103, intron 9 of 9)	intron (NM_001025103, intron 9 of 9)	-1520.0	NM_009842	12476.0	Mm.30246	NM_009842	ENSMUSG00000025510	Cd151	PETA-3|SFA-1|Tspan24	CD151 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-6696708-2	chr17	6696597	6696797	+	592.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_183370, intron 1 of 12)	intron (NM_183370, intron 1 of 12)	7625.0	NM_183370	83672.0	Mm.442201	NM_031395	ENSMUSG00000041831	Sytl3	A430092N21|Slp3|Slp3-a|Slp3-b|mFLJ00307	synaptotagmin-like 3	protein-coding	0.00875282216942058	0.0262883735656474	0.482274441725345	0.0161230049959654	0.746995881238788	0.0275797013838852	0.491889119148817	0.016897538281148	1.53515287173596	0.492488033513985	1
Merged-chr4-46041905-1	chr4	46041805	46042005	+	826.5	f0_balb.idr	intron (NM_021883, intron 1 of 9)	intron (NM_021883, intron 1 of 9)	2683.0	NM_021883	21916.0	Mm.249594	NM_021883	ENSMUSG00000028328	Tmod1	E-Tmod|Tmod	tropomodulin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-23707718-2	chr17	23707618	23707818	+	647.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18618.0	NM_023058	268930.0	Mm.182193	NM_023058	ENSMUSG00000023908	Pkmyt1	6230424P17|AW209059|Myt1	protein kinase, membrane associated tyrosine/threonine 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95651435-4	chr3	95651340	95651540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7281.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-28242189-3	chr5	28242091	28242291	+	757.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310512, intron 1 of 3)	intron (NM_001310512, intron 1 of 3)	3597.0	NM_001310512	269637.0	Mm.68286	NM_175651	ENSMUSG00000044681	Cnpy1	1500012D20Rik|9630008K15Rik|AI853839	canopy FGF signaling regulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-33938637-4	chr5	33938498	33938698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-2340.0	NM_011914	24116.0	Mm.332320	NM_011914	ENSMUSG00000029111	Nelfa	Whsc2|Whsc2h	negative elongation factor complex member A, Whsc2	protein-coding	3.26522189008267	3.28591894275851	3.27516954563722	1.95208584901779	3.50720227291785	4.11226280625978	4.19746060297655	3.97800741172637	1.39452077055299	0.0150555725009697	0.145536924260393
Merged-chr11-100400277-2	chr11	100400177	100400377	+	887.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_132425, intron 1 of 3)	intron (NR_132425, intron 1 of 3)	2161.0	NR_132425	102635937.0	Mm.421398	NR_132425		Gm12348	-	predicted gene 12348	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-22313812-2	chr16	22313712	22313912	+	952.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18824.0	NR_153764	100043507.0		NR_153764		Gng5-ps	Gm15776	G protein subunit gamma 5, pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-136249406-2	chr4	136249270	136249470	+	735.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011542, intron 1 of 10)	intron (NM_011542, intron 1 of 10)	1413.0	NM_011542	21401.0	Mm.112	NM_011542	ENSMUSG00000001604	Tcea3	S-II|SII-K1	transcription elongation factor A (SII), 3	protein-coding	0.90554812355686	2.28478830112709	1.74541304800785	0.940061191428755	0.910815358389604	2.30396357944274	2.11970163641162	1.55426733652993	0.580098074556701	0.653017878496255	0.986583880083516
Merged-chr4-43041016-2	chr4	43040916	43041116	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253353)	promoter-TSS (NM_001253353)	-715.0	NM_001253354	230088.0	Mm.260162	NM_172691	ENSMUSG00000036002	Fam214b	B230312A22Rik	family with sequence similarity 214, member B	protein-coding	-0.214479291901858	-0.337020868111495	-0.174041269737601	-0.343656436027428	-0.347712577392435	0.138642621728961	-0.33994725346607	0.0632430263527143	1.76758596043812	0.458903957383104	1
Merged-chr2-28180242-3	chr2	28180134	28180334	+	676.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR24|LTR|ERV1	-12859.0	NM_001038613	56177.0	Mm.43278	NM_019498	ENSMUSG00000026833	Olfm1	AMY|AW742568|Noe1|OlfA|Pancortin|Pancortin3	olfactomedin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10835111-2	chr19	10835011	10835211	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-5053.0	NM_009852	12511.0	Mm.290897	NM_009852	ENSMUSG00000024670	Cd6	-	CD6 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-83350203-4	chr15	83350104	83350304	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025445)	promoter-TSS (NM_025445)	43.0	NM_001357756	66251.0	Mm.258910	NM_025445	ENSMUSG00000054277	Arfgap3	0610009H19Rik|1810004P07Rik|1810035F16Rik|9130416J18Rik|Arfgap1	ADP-ribosylation factor GTPase activating protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-29816362-4	chr19	29816248	29816448	+	981.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3374.0	NM_177721	240614.0	Mm.125503	NM_177721	ENSMUSG00000074909	Ranbp6	C630001B19	RAN binding protein 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-20108107-4	chr13	20108000	20108200	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	17593.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	1.39436838310482	0.826377181325246	1.41942520084652	1.26187015372174	1.20696474534323	0.828917030771628	1.43171863244172	1.26853532224821	-0.191172320187857	0.887385219426995	0.998431161219273
Merged-chr16-17729717-2	chr16	17729617	17729817	+	939.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-6770.0	NM_001040683	94112.0	Mm.208970	NM_033609	ENSMUSG00000012114	Med15	A230074L19Rik|AW536074|Pcqap|mPcqap	mediator complex subunit 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-120052444-3	chr9	120052350	120052550	+	731.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009987, intron 1 of 1)	intron (NM_009987, intron 1 of 1)	15846.0	NM_009987	13051.0	Mm.44065	NM_009987	ENSMUSG00000052336	Cx3cr1	-	chemokine (C-X3-C motif) receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-36138598-2	chr2	36138498	36138698	+	678.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026422, intron 1 of 6)	intron (NM_026422, intron 1 of 6)	-1894.0	NR_027515	67889.0	Mm.205937	NM_026434	ENSMUSG00000026889	Rbm18	2010004P11Rik|AU015530	RNA binding motif protein 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-74953451-3	chr9	74953358	74953558	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113283, intron 1 of 12)	intron (NM_001113283, intron 1 of 12)	405.0	NM_001113283	235493.0	Mm.208955	NM_153584	ENSMUSG00000034858	Fam214a	6330415I01Rik|AI553555|C130047D21Rik|Kiaa1370|mKIAA1370	family with sequence similarity 214, member A	protein-coding	4.06263210183375	3.53409719586761	3.18232566081585	4.67761014289782	3.1479549260104	3.7581949931144	3.87513188982549	5.11233498283687	0.260122563809322	0.647609582173206	0.984971605872381
Merged-chr15-9714834-4	chr15	9714726	9714926	+	762.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305042, intron 8 of 36)	intron (NM_001305042, intron 8 of 36)	34042.0	NM_177123	320277.0	Mm.127822	NM_177123	ENSMUSG00000072663	Spef2	C230086A09Rik	sperm flagellar 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111806433-2	chr12	111806333	111806533	+	634.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001081959, exon 16 of 16)	3' UTR (NM_001081959, exon 16 of 16)	7446.0	NM_028875	74335.0	Mm.19082	NM_028875	ENSMUSG00000021287	Xrcc3	-	X-ray repair complementing defective repair in Chinese hamster cells 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-59184047-1	chr11	59183947	59184147	+	941.0	f1_c57bl6.idr	promoter-TSS (NM_080454)	promoter-TSS (NM_080454)	-834.0	NM_080454	118454.0	Mm.40016	NM_080454	ENSMUSG00000043448	Gjc2	B230382L12Rik|Cx47|Gja12	gap junction protein, gamma 2	protein-coding	0.0828275315371325	-0.0255675074380134	-0.029234248785501	-0.0320329801860345	0.37467798117851	0.286331361556448	-0.0284293274474498	0.428647898657225	3.00807286455455	0.165997791492857	1
Merged-chr4-123481888-2	chr4	123481788	123481988	+	768.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199137, intron 34 of 92)	intron (NM_001199137, intron 34 of 92)	-69977.0	NM_001167918	442834.0	Mm.483803	NM_001167918		D830031N03Rik	Kiaa0754|mKIAA0754	RIKEN cDNA D830031N03 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117444361-2	chr8	117444261	117444461	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028941, intron 10 of 20)	(TG)n|Simple_repeat|Simple_repeat	-8662.0	NR_106045	102466801.0		NR_106045	ENSMUSG00000099062	Mir7077	Gm27774|mmu-mir-7077	microRNA 7077	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-125390198-4	chr10	125390090	125390290	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61227.0	NM_001358496	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-111050093-2	chr9	111049993	111050193	+	560.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR31_Mur|LTR|ERVK	7151.0	NM_001302377	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-51868978-2	chr12	51868906	51869106	+	670.0	f0_balb.idr|f1_balb.idr	Intergenic	RMER17C2|LTR|ERVK	-39470.0	NM_144788	207304.0	Mm.249391	NM_144788	ENSMUSG00000035247	Hectd1	A630086P08Rik|AI844876|b2b327Clo|opm	HECT domain E3 ubiquitin protein ligase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-155150719-4	chr4	155150628	155150828	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	64124.0	NM_001356327	76866.0	Mm.200590	NM_001081100	ENSMUSG00000029049	Morn1	2900057D20Rik|4930417P05Rik|AU042805	MORN repeat containing 1	protein-coding	3.79132180823047	3.06811975755832	3.07208047486569	2.98330470655539	3.40081533680872	1.75046071562381	3.73942311420649	3.50083568148547	0.0194277532804877	0.977315022301462	0.998431161219273
Merged-chr19-5117604-4	chr19	5117501	5117701	+	947.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045528, intron 1 of 15)	CpG	807.0	NR_045528	16594.0	Mm.271648	NM_008451	ENSMUSG00000024862	Klc2	8030455F02Rik|AW212649|KLC 2|KLC-2	kinesin light chain 2	protein-coding	-0.585750136378803	-0.574740085344961	-0.578352923889335	-0.0496394507928595	-0.585064430927764	-0.573924946871814	-0.577556558535478	-0.0428439794746447	0.0283831331496041	0.992068125565279	1
Merged-chr19-58118999-3	chr19	58118906	58119106	+	855.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181415, intron 28 of 28)	intron (NM_181415, intron 28 of 28)	67839.0	NR_049196	100885835.0		NR_049196	ENSMUSG00000093757	Mir5623	Gm26068|mir-5623|mmu-mir-5623	microRNA 5623	ncRNA	2.1294774461418	3.50259009225737	2.74926169314672	3.2984443746643	2.66259895235576	3.09556261109257	2.77095405325057	3.16684010040423	-0.147609935934867	0.830275281202413	0.998431161219273
Merged-chr10-59225282-4	chr10	59225147	59225347	+	988.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172939, exon 1 of 1)	3' UTR (NM_172939, exon 1 of 1)	3325.0	NM_172939	268301.0	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117802057-4	chr8	117801934	117802134	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026758)	promoter-TSS (NM_026758)	-60.0	NM_001357232	68533.0	Mm.181836	NM_026758	ENSMUSG00000031843	Mphosph6	1110001M01Rik|AA536809|C86426	M phase phosphoprotein 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-37656105-2	chr16	37656005	37656205	+	716.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1737.0	NM_026610	68194.0	Mm.379154	NM_026610	ENSMUSG00000022820	Ndufb4	0610006N12Rik|1300010H20Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-118981281-3	chr10	118981179	118981379	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-54136.0	NR_110482	216377.0	Mm.208936	NR_110482	ENSMUSG00000112854	Gm38403	C230029M16	predicted gene, 38403	ncRNA	0.443652580826105	0.47630177788096	0.0422902647144398	0.581279040593485	0.0350589656905748	0.047134499707485	0.0431572084457433	0.0397996341150924	-3.94999032745696	0.0727122436386165	1
Merged-chr5-147758273-4	chr5	147758162	147758362	+	996.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32274.0	NM_010228	14254.0	Mm.389712	NM_010228	ENSMUSG00000029648	Flt1	AI323757|Flt-1|VEGFR-1|VEGFR1|sFlt1	FMS-like tyrosine kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135370676-2	chr5	135370576	135370776	+	731.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153312, intron 2 of 9)	ID4|SINE|ID	723.0	NM_145414	100609.0	Mm.281189	NM_145414	ENSMUSG00000000916	Nsun5	9830109N13Rik|AI326939|Nol1r|Wbscr20|Wbscr20a	NOL1/NOP2/Sun domain family, member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-84933673-4	chr1	84933580	84933780	+	831.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027921, intron 1 of 4)	intron (NM_027921, intron 1 of 4)	1403.0	NM_027921	71781.0	Mm.158754	NM_027921	ENSMUSG00000026220	Slc16a14	1110004H10Rik	solute carrier family 16 (monocarboxylic acid transporters), member 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-54528714-3	chr14	54528661	54528861	+	761.25	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11291.0	NM_001313907	27374.0	Mm.196585	NM_013768	ENSMUSG00000023110	Prmt5	Jbp1|Skb1	protein arginine N-methyltransferase 5	protein-coding	2.0414102069095	2.08216454062756	2.32269891621799	1.08927848712489	1.4530263450948	1.80618513107081	2.51228603437405	1.09297335078866	-0.31538984778013	0.782050808142573	0.998431161219273
Merged-chr15-98533966-4	chr15	98533863	98534063	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_153345, exon 1 of 11)	non-coding (NR_153345, exon 1 of 11)	306.0	NM_001359827	69612.0	Mm.229107	NM_133714	ENSMUSG00000022992	Kansl2	2310037I24Rik|B930009D17	KAT8 regulatory NSL complex subunit 2	protein-coding	5.01898954970801	4.18883229564126	4.18403346470014	4.82051386543719	4.70413418319719	4.14500429599423	3.75995664990953	5.00958732564526	-0.144610889491649	0.734427994955798	0.998431161219273
Merged-chr17-71552011-4	chr17	71551894	71552094	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001142631)	promoter-TSS (NM_001142631)	-67.0	NM_001142631	70891.0	Mm.477599	NM_029254	ENSMUSG00000052525	Spdya	4921517J08Rik|4930548B21Rik|GS4|MLZ-465|Spdy1	speedy/RINGO cell cycle regulator family, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-23774051-2	chr11	23773951	23774151	+	715.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3081.0	NM_009044	19696.0	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-7762113-2	chr9	7762013	7762213	+	704.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR9F|LTR|ERVK	-1964.0	NM_133739	71929.0	Mm.283293	NM_133739	ENSMUSG00000050912	Tmem123	2310075C12Rik	transmembrane protein 123	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-32729641-1	chr5	32729541	32729741	+	832.0	f1_balb.idr	Intergenic	Intergenic	16701.0	NM_001347332	320951.0	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-170152346-2	chr2	170152246	170152446	+	838.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9671.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-90905834-4	chr5	90905832	90906032	+	886.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009140)	TTS (NM_009140)	2033.0	NM_009140	20310.0	Mm.4979	NM_009140	ENSMUSG00000058427	Cxcl2	CINC-2a|GROb|Gro2|MIP-2|MIP-2a|Mgsa-b|Mip2|Scyb|Scyb2	chemokine (C-X-C motif) ligand 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-144100336-4	chr5	144100249	144100449	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081109)	promoter-TSS (NM_001081109)	-87.0	NM_001081109	231876.0	Mm.288726	NM_001081109	ENSMUSG00000038970	Lmtk2	2900041G10Rik|A330101P12Rik|BREK|KPI-2|KPI2|aatyk2|cprk	lemur tyrosine kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85533810-4	chr12	85533697	85533897	+	969.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2c|LINE|L2	59907.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152613836-4	chr1	152613710	152613910	+	986.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346119, intron 2 of 17)	intron (NM_001346119, intron 2 of 17)	11407.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-84597775-4	chr11	84597671	84597871	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	72111.0	NR_038057	78365.0	Mm.260345	NR_038057	ENSMUSG00000087211	Lhx1os	1500016L03Rik|Lhx1as	LIM homeobox 1, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-90261914-2	chr14	90261814	90262014	+	685.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045712, intron 7 of 8)	intron (NR_045712, intron 7 of 8)	135023.0	NR_045712	74967.0	Mm.390704	NR_045712	ENSMUSG00000115001	4930474H20Rik	-	RIKEN cDNA 4930474H20 gene	ncRNA	1.31365633981645	1.12640702918791	1.68835705544574	1.63403478664263	1.02704098187232	1.13388871897756	2.15910794163593	0.857590326318544	-0.0957101748057906	0.939844789916795	0.998431161219273
Merged-chr17-31294529-2	chr17	31294429	31294629	+	754.833374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153062)	promoter-TSS (NM_153062)	-954.0	NM_153062	224674.0	Mm.311395	NM_153062	ENSMUSG00000024036	Slc37a1	G3PP	solute carrier family 37 (glycerol-3-phosphate transporter), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-32555607-3	chr11	32555511	32555711	+	687.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 2 of 18)	intron (NM_009288, intron 2 of 18)	22345.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	-0.945048397500242	-0.929483123559864	-0.607478390143446	-0.941314892802011	-0.944493398655842	-0.426605083589893	-0.938419026497581	-0.940921657719869	0.755218837965003	0.80884643163874	1
Merged-chr17-57424566-2	chr17	57424466	57424666	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355722, intron 12 of 22)	L1Md_F2|LINE|L1	65880.0	NM_010130	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-101975210-2	chr12	101975110	101975310	+	876.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016856)	promoter-TSS (NM_016856)	-764.0	NM_016856	51786.0	Mm.716	NM_016856	ENSMUSG00000041781	Cpsf2	100kDa|2610024B04Rik|AI662483|Cpsf|MCPSF|mKIAA1367	cleavage and polyadenylation specific factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-32239999-4	chr4	32239912	32240112	+	994.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-177423.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-151587483-3	chr2	151587387	151587587	+	759.866638	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_145535, exon 7 of 9)	exon (NM_145535, exon 7 of 9)	14864.0	NM_145535	228765.0	Mm.32068	NM_145535	ENSMUSG00000027456	Sdcbp2	-	syndecan binding protein (syntenin) 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67625584-3	chr10	67625503	67625703	+	921.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-53644.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30691519-3	chr2	30691400	30691600	+	843.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-13489.0	NR_136917	665635.0	Mm.450149	NR_136917		Gm14486	-	predicted gene 14486	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-63985866-2	chr9	63985766	63985966	+	745.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008542, intron 3 of 3)	B3|SINE|B2	36193.0	NM_008542	17130.0	Mm.325757	NM_008542	ENSMUSG00000036867	Smad6	Madh6|b2b390Clo	SMAD family member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-181497710-4	chr2	181497563	181497763	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_111899, intron 1 of 5)	intron (NR_111899, intron 1 of 5)	521.0	NM_001291204	66314.0	Mm.136648	NM_025482	ENSMUSG00000000827	Tpd52l2	2810411G23Rik|AU016537|C86069|D54	tumor protein D52-like 2	protein-coding	3.0232017429244	1.57653615277614	2.5049288937718	1.4754634639828	3.45282501139026	2.03708137889182	2.27807976435305	1.20945188604326	0.396644915688578	0.696800600825492	0.997929106458421
Merged-chr4-123083026-3	chr4	123082916	123083116	+	790.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22145.0	NM_007559	12164.0	Mm.439764	NM_007559	ENSMUSG00000002384	Bmp8b	Op3	bone morphogenetic protein 8b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-52842763-4	chr6	52842661	52842861	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173406, intron 2 of 4)	MTC|LTR|ERVL-MaLR	66859.0	NM_001168277	231986.0	Mm.386865	NM_173406	ENSMUSG00000063568	Jazf1	AI591476|C820002C15|Jaz1|Tip27	JAZF zinc finger 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36262302-4	chr1	36262213	36262413	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	11112.0	NM_153408	214854.0	Mm.389110	NM_153408	ENSMUSG00000047180	Neurl3	2010300P06Rik|Lincr	neuralized E3 ubiquitin protein ligase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-114934712-1	chr9	114934612	114934812	+	1000.0	f1_balb.idr	promoter-TSS (NM_175380)	promoter-TSS (NM_175380)	-725.0	NM_175380	333433.0	Mm.38198	NM_175380	ENSMUSG00000050627	Gpd1l	2210409H23Rik|D9Ertd660e	glycerol-3-phosphate dehydrogenase 1-like	protein-coding	0.215107684389743	0.438189587733551	0.229679244727077	0.968261107514128	0.895197728841089	0.61292996021706	0.231236643979894	0.225174059374489	0.101701923593286	0.958524388294903	1
Merged-chr1-40266067-1	chr1	40265967	40266167	+	745.0	f0_balb.idr	promoter-TSS (NM_001123382)	promoter-TSS (NM_001123382)	-519.0	NM_001123382	16177.0	Mm.896	NM_008362	ENSMUSG00000026072	Il1r1	CD121a|CD121b|IL-1R1|IL-iR|Il1r-1	interleukin 1 receptor, type I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118761699-2	chr9	118761599	118761799	+	745.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 1 of 13)	MTEa|LTR|ERVL-MaLR	50007.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-107342595-4	chr11	107342516	107342716	+	967.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 1 of 9)	MTC|LTR|ERVL-MaLR	128104.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-25102080-2	chr12	25101976	25102176	+	694.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-5984.0	NM_010496	15902.0	Mm.34871	NM_010496	ENSMUSG00000020644	Id2	AI255428|C78922|Idb2|bHLHb26	inhibitor of DNA binding 2	protein-coding	2.50870829415073	1.19146987186846	1.15720614407176	3.08432392834306	2.19147003120915	2.089341695441	1.16491146101781	2.50494517583482	-0.425651899946474	0.710065046901126	0.998431161219273
Merged-chr1-144249153-4	chr1	144249070	144249270	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015811)	promoter-TSS (NM_015811)	-66.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	6.07338584005694	6.54104973637653	6.40335061447475	6.26377208334234	6.28353037910198	6.6101731938642	6.72849950421111	6.45334230031537	0.215209825385609	0.301013831147337	0.80233203779008
Merged-chr4-40364452-4	chr4	40364363	40364563	+	918.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51231.0	NR_040663	75819.0	Mm.399244	NR_040663	ENSMUSG00000087137	4930509K18Rik	-	RIKEN cDNA 4930509K18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-102621783-2	chr14	102621683	102621883	+	996.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	360849.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28234494-2	chr17	28234394	28234594	+	602.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011145, intron 1 of 7)	intron (NM_011145, intron 1 of 7)	1740.0	NM_011145	19015.0	Mm.328914	NM_011145	ENSMUSG00000002250	Ppard	NUC-1|NUC1|Nr1c2|PPAR-beta|PPAR-delta|PPAR[b]|PPARdelta|Pparb|Pparb/d	peroxisome proliferator activator receptor delta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-97825908-2	chr15	97825808	97826008	+	872.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001204280, intron 1 of 21)	intron (NM_001204280, intron 1 of 21)	5859.0	NM_019572	56233.0	Mm.384027	NM_019572	ENSMUSG00000022475	Hdac7	5830434K02Rik|HD7|HD7a|Hdac7a|mFLJ00062	histone deacetylase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-62040385-3	chr9	62040300	62040500	+	685.416687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13610.0	NM_028748	74090.0	Mm.273267	NM_028748	ENSMUSG00000032278	Paqr5	0610010I15Rik|AV002411|BB115488|mPRg	progestin and adipoQ receptor family member V	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-63115937-2	chr1	63115837	63116037	+	692.599976	f1_balb.idr|f1_c57bl6.idr	intron (NR_045914, intron 1 of 3)	(TTTC)n|Simple_repeat|Simple_repeat	1197.0	NR_045914	100380944.0	Mm.392955	NR_045914	ENSMUSG00000084799	Ino80dos	Gm11602	INO80 complex subunit D, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69680541-2	chr11	69680441	69680641	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001163571, exon 2 of 11)	exon (NM_001163571, exon 2 of 11)	1429.0	NM_030702	80886.0	Mm.284592	NM_030702	ENSMUSG00000005204	Senp3	AA408656|Smt3ip|Smt3ip1	SUMO/sentrin specific peptidase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-33057739-4	chr14	33057654	33057854	+	960.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146022, intron 36 of 58)	intron (NM_001146022, intron 36 of 58)	66372.0	NM_026253	67580.0	Mm.46115	NM_026253	ENSMUSG00000041673	Lrrc18	4930442L21Rik|MTLR1	leucine rich repeat containing 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-55832243-4	chr16	55832151	55832351	+	935.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030612, intron 2 of 13)	intron (NM_030612, intron 2 of 13)	6390.0	NM_030612	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-60974149-4	chr1	60974051	60974251	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3763.0	NM_017480	54167.0	Mm.42044	NM_017480	ENSMUSG00000026009	Icos	AILIM|CCLP|CRP-1|H4|Ly115	inducible T cell co-stimulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69110945-4	chr11	69110929	69111129	+	881.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9424.0	NM_033041	84653.0	Mm.98505	NM_033041	ENSMUSG00000023781	Hes7	bHLHb37	hes family bHLH transcription factor 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-155762056-4	chr2	155761943	155762143	+	959.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10826.0	NM_011171	19124.0	Mm.3243	NM_011171	ENSMUSG00000027611	Procr	AI325044|Ccca|Ccd41|Epcr	protein C receptor, endothelial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-102460243-3	chr15	102460171	102460371	+	732.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025385, intron 3 of 4)	intron (NM_025385, intron 3 of 4)	1101.0	NM_025385	66151.0	Mm.393955	NM_025385	ENSMUSG00000023048	Prr13	1110020C13Rik|2010324E22Rik	proline rich 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80258117-2	chr10	80258017	80258217	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001347119)	TTS (NM_001347119)	2895.0	NM_001347119	14431.0	Mm.7329	NM_010255	ENSMUSG00000020150	Gamt	AA571402|Spintz1	guanidinoacetate methyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-120365094-2	chr6	120365001	120365201	+	664.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045558)	promoter-TSS (NR_045558)	-732.0	NR_045558	67200.0	Mm.45767	NM_026028	ENSMUSG00000030177	Ccdc77	2400002C23Rik|2700091N06Rik|AV168274	coiled-coil domain containing 77	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-48772223-3	chr6	48772133	48772333	+	717.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1382.0	NM_031247	83408.0	Mm.333050	NM_031247	ENSMUSG00000039264	Gimap3	2010110D23Rik|Gimap5|Ian4	GTPase, IMAP family member 3	protein-coding	0.860688919915209	0.48789333093056	0.479198308473139	0.472448345721726	1.06726334011719	1.25505641508027	0.969006014997813	0.650855001278809	2.46768473539996	0.146456536074495	1
Merged-chr7-126693433-4	chr7	126693337	126693537	+	891.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029420, intron 1 of 5)	B3|SINE|B2	2346.0	NM_029420	75764.0	Mm.280573	NM_029420	ENSMUSG00000059772	Slx1b	1110030E23Rik|2410170E21Rik|4833422P03Rik|AI853643|Giyd1|Giyd2	SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-58158311-4	chr13	58158226	58158426	+	898.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198004, intron 1 of 4)	(TG)n|Simple_repeat|Simple_repeat	677.0	NM_198004	75731.0	Mm.293919	NM_198004	ENSMUSG00000050002	Idnk	5133401N09Rik	idnK gluconokinase homolog (E. coli)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-50157179-3	chr15	50157065	50157265	+	995.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	731884.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-60835342-4	chr11	60835234	60835434	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001172112, intron 1 of 6)	ORR1C1|LTR|ERVL-MaLR	4703.0	NM_145428	216820.0	Mm.21475	NM_145428	ENSMUSG00000042569	Dhrs7b	BC003479|C79874|C80074|PexRAP	dehydrogenase/reductase (SDR family) member 7B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-139236241-4	chr4	139236110	139236310	+	969.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	42099.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	5.69584383025367	6.20809336933232	5.28235412349321	4.77036465849531	4.36091532134544	3.35931425387591	4.1936108359654	4.47558368894757	-1.69172154872103	2.11088929824985e-05	0.000850790488835508
Merged-chr3-101604112-4	chr3	101604020	101604220	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144900, intron 1 of 22)	CpG	587.0	NM_144900	11928.0	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-66879035-2	chr9	66878935	66879135	+	662.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	40670.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-154160789-4	chr4	154160695	154160895	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026388)	promoter-TSS (NM_026388)	-111.0	NM_026388	67808.0	Mm.288737	NM_026388	ENSMUSG00000029030	Tprgl	1200015A19Rik|Svap30|Tprg1l|mover	transformation related protein 63 regulated like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-91187544-4	chr1	91187427	91187627	+	974.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168392, intron 1 of 3)	intron (NM_001168392, intron 1 of 3)	7705.0	NM_001168392	51801.0	Mm.3272	NM_016894	ENSMUSG00000034353	Ramp1	9130218E19Rik	receptor (calcitonin) activity modifying protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-41842832-4	chr5	41842673	41842873	+	901.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081422, intron 1 of 26)	intron (NM_001081422, intron 1 of 26)	1542.0	NM_001310601	665775.0	Mm.158726	NM_001081422	ENSMUSG00000061755	Bod1l	A230054D04Rik|AI853319|FAM44A|mKIAA1327	biorientation of chromosomes in cell division 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-145017928-3	chr4	145017819	145018019	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276465, intron 66 of 69)	intron (NM_001276465, intron 66 of 69)	124782.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101658921-2	chr11	101658821	101659021	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6620.0	NM_025404	80981.0	Mm.266840	NM_025404	ENSMUSG00000034936	Arl4d	1110036H21Rik|ARL6|AW456149|Arf4l|Arfl4|Arl5	ADP-ribosylation factor-like 4D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80100259-2	chr10	80100159	80100359	+	995.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359637, intron 1 of 3)	intron (NM_001359637, intron 1 of 3)	928.0	NM_001359635	216161.0	Mm.262102	NM_183426	ENSMUSG00000035673	Sbno2	BC019206|F730040C21|Sno|Stno	strawberry notch 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-146649384-2	chr3	146649284	146649484	+	566.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045949, exon 4 of 4)	non-coding (NR_045949, exon 4 of 4)	1933.0	NM_029144	75015.0	Mm.250432	NM_029144	ENSMUSG00000048652	4930503B20Rik	1700013A07Rik|1700095G21Rik|4930483N21Rik|Gm1652|Samd13	RIKEN cDNA 4930503B20 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-66925787-2	chr10	66925687	66925887	+	575.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5403.0	NR_138561	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-88558571-2	chr5	88558471	88558671	+	856.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4109.0	NM_023054	65961.0	Mm.490364	NM_023054	ENSMUSG00000070697	Utp3	2400011K09Rik|AW557551|C87704|Crl-1|Crl1|Crlz1|Sas10	UTP3 small subunit processome component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-11602115-2	chr2	11602015	11602215	+	907.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_152824, intron 1 of 11)	intron (NM_152824, intron 1 of 11)	1084.0	NM_152824	76938.0	Mm.182769	NM_152824	ENSMUSG00000037197	Rbm17	2700027J02Rik	RNA binding motif protein 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127525905-2	chr10	127525805	127526005	+	818.333374	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_183297, exon 2 of 2)	3' UTR (NM_183297, exon 2 of 2)	-3461.0	NM_028230	108037.0	Mm.29890	NM_028230	ENSMUSG00000025403	Shmt2	2700043D08Rik|AA408223|AA986903|SHMT	serine hydroxymethyltransferase 2 (mitochondrial)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105996500-4	chr8	105996381	105996581	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_176913)	promoter-TSS (NM_176913)	-58.0	NM_176913	319446.0	Mm.248357	NM_176913	ENSMUSG00000053687	Dpep2	F630103D06Rik|MBD-2	dipeptidase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119863071-4	chr11	119862998	119863198	+	908.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028898, intron 20 of 33)	intron (NM_028898, intron 20 of 33)	-19191.0	NR_039557	100628577.0		NR_039557	ENSMUSG00000093061	Mir5098	mmu-mir-5098|mu-mir-5098	microRNA 5098	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-17717383-2	chr12	17717246	17717446	+	638.75	f0_c57.idr|f1_c57bl6.idr	intron (NM_016677, intron 1 of 3)	intron (NM_016677, intron 1 of 3)	26537.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	1.707824562501	0.969533122051833	1.86734666569319	0.938062812780497	1.72332002062797	0.973441280371221	1.88364388146986	1.71626327520197	0.548428920586603	0.677087937053236	0.994620498390277
Merged-chr3-157535108-4	chr3	157534990	157535190	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_152231)	promoter-TSS (NR_152231)	925.0	NM_001355386	53861.0	Mm.259036	NM_017381	ENSMUSG00000028180	Zranb2	AI227013|Zfp265|Zis|Znf265	zinc finger, RAN-binding domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70629208-2	chr8	70629115	70629315	+	646.75	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001330687)	TTS (NM_001330687)	2880.0	NM_011819	23886.0	Mm.31325	NM_011819	ENSMUSG00000038508	Gdf15	MIC-1|NAG-1|SBF	growth differentiation factor 15	protein-coding	2.50887439560355	1.84784804281601	1.79147868698578	2.78398591592695	2.18772910055338	2.32992593686959	1.60307864552879	2.29713611419705	-0.428487270903615	0.636237370329765	0.982417279970648
Merged-chr14-62231233-4	chr14	62231134	62231334	+	911.645874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61745.0	NM_173419	239133.0	Mm.127330	NM_173419	ENSMUSG00000048281	Dleu7	BC038059	deleted in lymphocytic leukemia, 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-48645822-2	chr6	48645734	48645934	+	606.5	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-1400.0	NM_001077410	243374.0	Mm.86514	NM_212486	ENSMUSG00000064262	Gimap8	Gm457|IAN9|IMAP8	GTPase, IMAP family member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-112675459-4	chr12	112675363	112675563	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001331107)	promoter-TSS (NM_001331107)	-579.0	NM_001331107	11651.0	Mm.6645	NM_009652	ENSMUSG00000001729	Akt1	Akt|LTR-akt|PKB|PKB/Akt|PKBalpha|Rac	thymoma viral proto-oncogene 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120662085-2	chr8	120661985	120662185	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010926, intron 1 of 4)	B1_Mm|SINE|Alu	6027.0	NM_010926	18117.0	Mm.2136	NM_010926	ENSMUSG00000031819	Emc8	Cox4nb|Fam158b|Noc4	ER membrane protein complex subunit 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-84398643-3	chr10	84398531	84398731	+	581.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004363, intron 2 of 6)	MTD|LTR|ERVL-MaLR	41840.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-123022896-3	chr8	123022797	123022997	+	633.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 1 of 12)	intron (NM_001081379, intron 1 of 12)	19387.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-57791543-4	chr10	57791426	57791626	+	994.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3018.0	NM_020561	57319.0	Mm.2379	NM_020561	ENSMUSG00000019872	Smpdl3a	0610010C24Rik|AI529588|ASM3A|ASML3|ASML3A	sphingomyelin phosphodiesterase, acid-like 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83705436-4	chr11	83705337	83705537	+	956.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081957, intron 2 of 2)	intron (NM_001081957, intron 2 of 2)	1381.0	NM_001081957	100034251.0	Mm.24097	NM_001081957	ENSMUSG00000069792	Wfdc17	Amwap|Gm11428	WAP four-disulfide core domain 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-146770361-4	chr5	146770272	146770472	+	859.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011669, intron 1 of 8)	intron (NM_011669, intron 1 of 8)	24584.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	2.28779062362558	2.93130360017853	1.61578361257779	3.56885477480798	1.88855919752476	3.29211029877344	1.33900012781323	2.30818580339827	-0.716245754981774	0.443282777751164	0.911848228504708
Merged-chr15-58682213-3	chr15	58682115	58682315	+	796.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	141212.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-96292063-1	chr16	96291963	96292163	+	754.0	f0_balb.idr	intron (NM_033149, intron 1 of 2)	intron (NM_033149, intron 1 of 2)	11031.0	NM_033149	93961.0	Mm.154783	NM_033149	ENSMUSG00000074892	B3galt5	1190002B21Rik|AU045265|b3Galt-V	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-139727368-2	chr2	139727268	139727468	+	867.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001276489, intron 1 of 5)	intron (NM_001276489, intron 1 of 5)	49190.0	NM_001276489	319909.0	Mm.41113	NM_001126490	ENSMUSG00000074766	Ism1	5430433G21Rik|Ism	isthmin 1, angiogenesis inhibitor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19269796-5	chr7	19269584	19269784	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009499, intron 1 of 12)	intron (NM_009499, intron 1 of 12)	2170.0	NM_001282021	22323.0	Mm.9684	NM_009499	ENSMUSG00000030403	Vasp	-	vasodilator-stimulated phosphoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-69143227-4	chr17	69143137	69143337	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355732, intron 1 of 21)	intron (NM_001355732, intron 1 of 21)	-13507.0	NM_013813	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-72235160-1	chr2	72235060	72235260	+	659.0	f1_c57bl6.idr	intron (NM_001355478, intron 21 of 26)	intron (NM_001355478, intron 21 of 26)	-50477.0	NM_023057	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	1.58660398115211	2.43619326226837	0.972124497180548	0.953635728995953	2.08720996318037	1.81847156128568	1.88115403657812	0.956905355541812	0.252414553283652	0.844070546463082	0.998431161219273
Merged-chr14-45034954-2	chr14	45034854	45035054	+	757.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	46843.0	NM_008964	19217.0	Mm.4630	NM_008964	ENSMUSG00000037759	Ptger2	EP2|Ptgerep2	prostaglandin E receptor 2 (subtype EP2)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-157338859-2	chr2	157338759	157338959	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010285, intron 1 of 4)	B3|SINE|B2	-1433.0	NM_001329683	14601.0	Mm.389327	NM_010285	ENSMUSG00000027643	Ghrh	GRF|Ghrf	growth hormone releasing hormone	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-110449060-4	chr9	110448947	110449147	+	946.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360306, intron 3 of 9)	intron (NM_001360306, intron 3 of 9)	27647.0	NM_001360306	270201.0	Mm.41744	NM_177771	ENSMUSG00000054792	Klhl18	A930041K15|AW545966	kelch-like 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-123201563-3	chr7	123201427	123201627	+	837.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-13339.0	NM_146198	233836.0	Mm.211838	NM_146198	ENSMUSG00000030769	Slc5a11	2010013B02Rik|Kst1|RKST2|SMIT2|Slc5a10	solute carrier family 5 (sodium/glucose cotransporter), member 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-34772550-4	chr2	34772429	34772629	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163434, intron 2 of 8)	CpG	439.0	NM_022310	14828.0	Mm.330160	NM_022310	ENSMUSG00000026864	Hspa5	AL022860|AU019543|Bip|D2Wsu141e|D2Wsu17e|Grp78|Hsce70|SEZ-7|Sez7|baffled|mBiP	heat shock protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-6178840-3	chr11	6178750	6178950	+	944.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173748, intron 2 of 5)	intron (NM_173748, intron 2 of 5)	-5519.0	NR_029471	100042173.0	Mm.441799	NR_029471		Rps15a-ps6	Gm11968	ribosomal protein S15A, pseudogene 6	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-35132967-4	chr12	35132884	35133084	+	943.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001014973, intron 21 of 25)	intron (NM_001014973, intron 21 of 25)	61913.0	NR_030449	751520.0		NR_030449	ENSMUSG00000076253	Mir680-3	Mirn680-3	microRNA 680-3	ncRNA	4.49337608134053	4.37020489104353	4.22594734923451	5.03707328203988	5.29503849986276	5.17569611550062	4.44037526358414	4.60914438685049	0.439749522775473	0.245243481459579	0.744321968233217
Merged-chr11-75255533-4	chr11	75255435	75255635	+	963.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177708, intron 1 of 1)	intron (NM_177708, intron 1 of 1)	61542.0	NM_177708	237847.0	Mm.82661	NM_177708	ENSMUSG00000045287	Rtn4rl1	Ngr3|Ngrh2|Ngrl2	reticulon 4 receptor-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-67175800-8	chr15	67175653	67175853	+	897.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009177, intron 1 of 8)	intron (NM_009177, intron 1 of 8)	1129.0	NM_009177	20442.0	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-26342363-1	chr12	26342263	26342463	+	641.75	f0_balb.idr	intron (NM_080563, intron 2 of 8)	intron (NM_080563, intron 2 of 8)	-4347.0	NR_130981	75243.0	Mm.444753	NR_130981	ENSMUSG00000114048	4930549C15Rik	-	RIKEN cDNA 4930549C15 gene	ncRNA	1.8185200637592	3.73329570377341	2.70220976921047	1.70029975750547	1.83767802263164	3.54676829399136	4.19403016291947	3.24183560322011	1.09400406813533	0.183592784271047	0.65845343533799
Merged-chr9-118690600-2	chr9	118690480	118690680	+	927.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 14 of 27)	intron (NM_133721, intron 14 of 27)	-21112.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	2.13096710242032	1.03287743952074	1.01175691184345	2.01060077768456	1.82346678272745	1.67012163195764	1.01647248018496	2.11130604089272	0.143473376461592	0.910367232028203	0.998431161219273
Merged-chr4-40821786-4	chr4	40821670	40821870	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022305, intron 2 of 5)	intron (NM_022305, intron 2 of 5)	28368.0	NR_039584	100628614.0		NR_039584	ENSMUSG00000096377	Mir5123	mmu-mir-5123|mu-mir-5123	microRNA 5123	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-70097657-2	chr10	70097557	70097757	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111121, intron 1 of 8)	CpG	536.0	NM_001111121	76551.0	Mm.281741	NM_001111121	ENSMUSG00000048701	Ccdc6	2810012H18Rik|AA536681|AA960498|AW061011	coiled-coil domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-73956652-1	chr16	73956552	73956752	+	903.0	f0_balb.idr	exon (NM_001358492, exon 17 of 27)	exon (NM_001358492, exon 17 of 27)	385415.0	NR_030464	751561.0		NR_030464	ENSMUSG00000104758	Mir691	Mirn691|mir-691|mmu-mir-691	microRNA 691	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-84097352-2	chr17	84097252	84097452	+	640.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18692.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167347580-2	chr2	167347480	167347680	+	844.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_019835, intron 1 of 8)	intron (NM_019835, intron 1 of 8)	1598.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-90127596-1	chr7	90127496	90127696	+	610.0	f1_c57bl6.idr	intron (NR_046007, intron 1 of 2)	intron (NR_046007, intron 1 of 2)	1878.0	NR_046006	78329.0	Mm.389940	NR_046006	ENSMUSG00000097162	2310010J17Rik	-	RIKEN cDNA 2310010J17 gene	ncRNA	-0.378301428097445	-0.617646774418661	-0.192459316399118	-0.623045245489003	-0.626340459988118	-0.616955968211879	-0.6200287149772	-0.333960733938854	-1.21361688625292	0.656969341595014	1
Merged-chr15-98853000-2	chr15	98852900	98853100	+	842.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001033276, exon 32 of 55)	exon (NM_001033276, exon 32 of 55)	18205.0	NM_001033276	381022.0	Mm.264889	NM_001033276	ENSMUSG00000048154	Kmt2d	ALR|BC032281|BC058659|C430014K11Rik|KMT2B|Mll2|Mll4	lysine (K)-specific methyltransferase 2D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-66894248-3	chr9	66894152	66894352	+	672.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	25453.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-68075522-3	chr10	68075458	68075658	+	884.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB7|LINE|L1	95988.0	NM_001359319	170799.0	Mm.209844	NM_133244	ENSMUSG00000037846	Rtkn2	B130039D23Rik|Mbf|Plekhk1	rhotekin 2	protein-coding	-0.539178321517482	-0.528744702060713	-0.53217687229538	-0.534815659897893	0.0105686711034848	-0.17957458167826	-0.531421038613547	-0.37432988765522	3.37424914024471	0.191145005799188	1
Merged-chr5-110650503-2	chr5	110650403	110650603	+	713.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153570, intron 8 of 14)	intron (NM_153570, intron 8 of 14)	2879.0	NM_153570	100608.0	Mm.29960	NM_153570	ENSMUSG00000033294	Noc4l	AI326906	NOC4 like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-7494906-1	chr19	7494806	7495006	+	1000.0	f0_c57.idr	intron (NM_146091, intron 1 of 12)	CpG	468.0	NM_146091	109168.0	Mm.264016	NM_146091	ENSMUSG00000024759	Atl3	4633402C03Rik|5730596K20Rik|AI465397|AW228836	atlastin GTPase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117049820-2	chr8	117049720	117049920	+	600.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_029686, intron 17 of 42)	intron (NM_029686, intron 17 of 42)	32629.0	NM_029686	76645.0	Mm.159753	NM_029686	ENSMUSG00000034416	Pkd1l2	1700126L06Rik	polycystic kidney disease 1 like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30162097-2	chr2	30161997	30162197	+	966.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9427.0	NM_007931	13804.0	Mm.474473	NM_007931	ENSMUSG00000015337	Endog	-	endonuclease G	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-30175548-2	chr6	30175448	30175648	+	747.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1075.0	NR_038124	100463519.0	Mm.361139	NR_038124		BB283400	BF465573|Rncr4	expressed sequence BB283400	ncRNA	1.18695187172783	0.909551402800451	1.28064631072759	1.5121312449392	1.63904500234445	0.912975217673121	1.97564673619893	1.52054630447309	1.20658436386516	0.345010149051439	0.845797837334461
Merged-chr1-142894335-3	chr1	142894228	142894428	+	670.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-746369.0	NM_020025	26878.0	Mm.285580	NM_020025	ENSMUSG00000033849	B3galt2	-	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-8260468-3	chr12	8260371	8260571	+	975.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172401, intron 4 of 6)	intron (NM_172401, intron 4 of 6)	41483.0	NM_001312876	238057.0	Mm.271308	NM_013527	ENSMUSG00000037660	Gdf7	BMP12	growth differentiation factor 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-72916015-2	chr17	72915918	72916118	+	883.416626	f0_balb.idr|f1_balb.idr	Intergenic	MIRc|SINE|MIR	-2287.0	NM_029999	77889.0	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	2.70363538080918	2.63219662392271	1.89622663736695	2.44836112494224	3.98999140727274	4.42922126080788	4.01035184240171	3.37329747075078	2.48367224670411	5.88442398626687e-05	0.00200952520836518
Merged-chr5-95924714-4	chr5	95924589	95924789	+	977.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32250.0	NM_018866	55985.0	Mm.10116	NM_018866	ENSMUSG00000023078	Cxcl13	4631412M08Rik|ANGIE2|Angie|BCA-1|BLC|BLR1L|Scyb13	chemokine (C-X-C motif) ligand 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-39553243-8	chr18	39553138	39553338	+	953.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65993.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-109692415-2	chr8	109692315	109692515	+	655.333374	f1_balb.idr|f1_c57bl6.idr	intron (NR_155034, intron 1 of 10)	intron (NR_155034, intron 1 of 10)	879.0	NR_155034	71955.0	Mm.290036	NM_028018	ENSMUSG00000031729	Ist1	2400003C14Rik|AW536298|mKIAA0174	increased sodium tolerance 1 homolog (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-73891742-2	chr2	73891642	73891842	+	570.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025093, intron 1 of 14)	intron (NM_001025093, intron 1 of 14)	897.0	NM_001284371	11909.0	Mm.209903	NM_009715	ENSMUSG00000027104	Atf2	Atf-2|CRE-BP|Creb2|D130078H02Rik|D18875|Tg(Gzma-Klra1)7Wum|mXBP	activating transcription factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-113327692-4	chr2	113327615	113327815	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285458)	promoter-TSS (NM_001285458)	-21.0	NM_001285458	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	5.09117792655598	4.49183897976442	4.91460660939284	3.89581736431466	5.3370061063347	4.97598866646771	4.69428174249461	4.12507166942264	0.220236600708589	0.588376478239955	0.968414048967832
Merged-chr15-27628033-4	chr15	27627942	27628142	+	991.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013792, intron 1 of 6)	intron (NM_001013792, intron 1 of 6)	2651.0	NM_001013792	432940.0	Mm.309164	NM_001013792	ENSMUSG00000046034	Otulin	C79097|Fam105b|m3Sapc|m7-1Sapc	OTU deubiquitinase with linear linkage specificity	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-53001409-2	chr19	53001309	53001509	+	571.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133216, intron 14 of 20)	intron (NM_133216, intron 14 of 20)	9347.0	NR_105834	102465220.0		NR_105834	ENSMUSG00000098730	Mir6407	Gm27832|mmu-mir-6407	microRNA 6407	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-77227356-4	chr1	77227274	77227474	+	790.520813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	269394.0	NR_105770	102465180.0		NR_105770	ENSMUSG00000099141	Mir6352	Gm27481|mmu-mir-6352	microRNA 6352	ncRNA	2.22014503253148	1.82924077262133	1.42559378480739	1.39511352487579	1.65488054709031	1.98842198856494	2.04601468870306	2.27332078729153	0.661445411437299	0.512323861454989	0.945451213166439
Merged-chr10-19066209-2	chr10	19066109	19066309	+	607.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-50799.0	NM_009397	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-5100560-1	chr18	5100460	5100660	+	566.0	f1_balb.idr	intron (NM_001347449, intron 22 of 30)	intron (NM_001347449, intron 22 of 30)	53971.0	NM_001347449	225115.0	Mm.136791	NM_153153	ENSMUSG00000024236	Svil	AU024053|B430302E16Rik	supervillin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-142469272-2	chr5	142469172	142469372	+	723.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172725, intron 6 of 16)	intron (NM_172725, intron 6 of 16)	5341.0	NM_172725	231855.0	Mm.78250	NM_172725	ENSMUSG00000039623	Ap5z1	C330006K01Rik	adaptor-related protein complex 5, zeta 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-153293060-1	chr3	153292960	153293160	+	804.200012	f0_balb.idr	intron (NM_011372, intron 3 of 4)	intron (NM_011372, intron 3 of 4)	5589.0	NR_126464	75489.0	Mm.443252	NR_126464	ENSMUSG00000105023	1700012D16Rik	-	RIKEN cDNA 1700012D16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-98030528-4	chr5	98030438	98030638	+	859.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_133738, exon 1 of 17)	exon (NM_133738, exon 1 of 17)	424.0	NM_133738	71914.0	Mm.24842	NM_133738	ENSMUSG00000029338	Antxr2	2310046B19Rik|AW561899|CMG-2|CMG2|cI-35	anthrax toxin receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-51654557-3	chr3	51654485	51654685	+	928.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6594.0	NM_174995	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-49472774-4	chr5	49472672	49472872	+	646.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	-187113.0	NM_001199244	80334.0	Mm.160172	NM_030265	ENSMUSG00000029088	Kcnip4	AV032399|Calp|Calp250|KChIP4|KChIP4a	Kv channel interacting protein 4	protein-coding	2.41751530024901	3.46114806334768	2.6074555904208	3.59799097519904	2.43574430917626	2.71452335256387	3.06621284865149	2.66898290947485	-0.731906060077825	0.297877663256928	0.800257675359925
Merged-chr6-83677854-4	chr6	83677764	83677964	+	881.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144943)	promoter-TSS (NM_144943)	-7.0	NM_144943	246278.0	Mm.136079	NM_144943	ENSMUSG00000034783	Cd207	-	CD207 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126496471-2	chr8	126496371	126496571	+	621.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-21406.0	NM_001159907	212728.0	Mm.482479	NM_001159907	ENSMUSG00000090290	Tarbp1	Gm17296|Gm179	TAR RNA binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127056310-2	chr10	127056210	127056410	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001033262, exon 4 of 4)	3' UTR (NM_001033262, exon 4 of 4)	3874.0	NM_001033262	216438.0	Mm.37892	NM_001033262	ENSMUSG00000040502	March9	AI608492|BC019560	membrane-associated ring finger (C3HC4) 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111271957-2	chr12	111271857	111272057	+	794.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_033603, intron 3 of 11)	CpG-3528	861.0	NM_033603	93835.0	Mm.197639	NM_033603	ENSMUSG00000021278	Amn	-	amnionless	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133874702-4	chr4	133874604	133874804	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285506)	promoter-TSS (NM_001285506)	27.0	NM_001285506	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	3.72040533332133	4.66075556916831	3.80875842241665	5.21184471934381	4.66452601713965	4.28250915710623	4.2091028816606	5.03538677462633	0.125464457908116	0.781112306000152	0.998431161219273
Merged-chr5-31197703-2	chr5	31197603	31197803	+	752.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_153680, exon 11 of 15)	exon (NM_153680, exon 11 of 15)	4339.0	NM_001177901	101023.0	Mm.45033	NM_175311	ENSMUSG00000043059	Zfp513	AW990386|D430028M17Rik|Znf513	zinc finger protein 513	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-85595326-1	chr1	85595226	85595426	+	943.599976	f1_balb.idr	intron (NM_030194, intron 2 of 11)	intron (NM_030194, intron 2 of 11)	3484.0	NM_030194	109032.0	Mm.335802	NM_030194	ENSMUSG00000070034	Sp110	5031415C07Rik|52kDa|5830484A20Rik|Ifi75|Ipr1	Sp110 nuclear body protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-29946571-2	chr16	29946471	29946671	+	789.083374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32553.0	NR_037689	328657.0	Mm.425982	NM_001033403		Gm1968	-	predicted gene 1968	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44268650-4	chr9	44268531	44268731	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163743)	promoter-TSS (NM_001163743)	-32.0	NM_001163742	270151.0	Mm.3957	NM_178420	ENSMUSG00000032109	Nlrx1	BC034204|NOD9	NLR family member X1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45813966-4	chr7	45813865	45814065	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011181, intron 1 of 11)	CpG	351.0	NM_011181	19158.0	Mm.272130	NM_011181	ENSMUSG00000003269	Cyth2	ARNO|CLM2|Pscd2	cytohesin 2	protein-coding	-0.801138741720286	-0.789596697914661	-0.793362408027705	0.0581555703407771	-0.639915474691257	-0.787441361708269	-0.792530545983133	-0.795768139152743	-2.44325284880004	0.398866103975381	1
Merged-chr18-61045235-2	chr18	61045135	61045335	+	858.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146268)	promoter-TSS (NM_001146268)	85.0	NM_008809	18596.0	Mm.4146	NM_008809	ENSMUSG00000024620	Pdgfrb	AI528809|CD140b|PDGFR-1|Pdgfr	platelet derived growth factor receptor, beta polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-63549690-2	chr4	63549590	63549790	+	726.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_024173, intron 2 of 2)	intron (NM_024173, intron 2 of 2)	4925.0	NM_024173	66290.0	Mm.371615	NM_024173	ENSMUSG00000039105	Atp6v1g1	1810024D14Rik|AA960677|ATP6J|Atp6g1|VAG1|Vma10	ATPase, H+ transporting, lysosomal V1 subunit G1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65539619-2	chr9	65539519	65539719	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	40468.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102396527-2	chr12	102396427	102396627	+	787.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011175, intron 11 of 13)	intron (NM_011175, intron 11 of 13)	43286.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99702098-4	chr15	99701995	99702195	+	997.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031842)	promoter-TSS (NM_031842)	-192.0	NM_031842	83797.0	Mm.273756	NM_031842	ENSMUSG00000023018	Smarcd1	AA407987|Baf60a|D15Kz1	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-75706145-2	chr2	75706045	75706245	+	921.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1482.0	NM_010902	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-100728136-2	chr15	100728036	100728236	+	714.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172451, intron 1 of 11)	intron (NM_172451, intron 1 of 11)	1240.0	NM_001161767	207839.0	Mm.22969	NM_172451	ENSMUSG00000037280	Galnt6	4632410F13|AW047994|GalNAc-T6	polypeptide N-acetylgalactosaminyltransferase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-106556054-4	chr3	106555954	106556154	+	772.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025582, intron 3 of 6)	ORR1G|LTR|ERVL-MaLR	-8252.0	NM_133869	99712.0	Mm.429443	NM_133869	ENSMUSG00000040774	Cept1	9930118K05Rik|mCEPT1	choline/ethanolaminephosphotransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-116655777-4	chr4	116655667	116655867	+	920.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-4093.0	NM_021473	58810.0	Mm.30085	NM_021473	ENSMUSG00000028692	Akr1a1	2610201A18Rik|Akr1a4	aldo-keto reductase family 1, member A1 (aldehyde reductase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-151563286-2	chr2	151563186	151563386	+	590.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9337.0	NM_145535	228765.0	Mm.32068	NM_145535	ENSMUSG00000027456	Sdcbp2	-	syndecan binding protein (syntenin) 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-161512372-4	chr1	161512277	161512477	+	886.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	17720.0	NM_183391	240873.0	Mm.276823	NM_183391	ENSMUSG00000066755	Tnfsf18	Gitrl|Tnlg2a	tumor necrosis factor (ligand) superfamily, member 18	protein-coding	2.18892211458291	1.79873495114312	2.20641945914077	1.54330097321454	1.62593101370204	1.19797189544008	1.75355595924908	2.15387960237976	-0.664379203623965	0.525834536523496	0.948526025239387
Merged-chr4-41697692-4	chr4	41697658	41697858	+	781.974976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016673)	promoter-TSS (NM_016673)	-667.0	NM_016673	12804.0	Mm.425178	NM_016673	ENSMUSG00000028444	Cntfr	Cntfralpha	ciliary neurotrophic factor receptor	protein-coding	1.1041110880454	0.578607284349416	2.61375098102949	0.801161654149514	0.512652007120677	0.881509989688954	1.55587289761196	0.541998399792004	-1.84274101286952	0.206835897856966	0.694871318598434
Merged-chr11-86625614-3	chr11	86625517	86625717	+	760.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356531, intron 7 of 11)	intron (NM_001356531, intron 7 of 11)	-41459.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70668905-4	chr11	70668802	70669002	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_178116)	TTS (NM_178116)	514.0	NM_172561	216873.0	Mm.432524	NM_172561	ENSMUSG00000018287	Spag7	5730443G10|ACRP|FSA-1|Fsa1l	sperm associated antigen 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-43578472-2	chr7	43578372	43578572	+	644.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-1114.0	NM_172482	210105.0	Mm.234422	NM_172482	ENSMUSG00000030469	Zfp719	8030458J18|9430094P17Rik|C630016O21Rik|mszf6	zinc finger protein 719	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-16106520-3	chr1	16106408	16106608	+	824.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133832, intron 1 of 5)	intron (NM_133832, intron 1 of 5)	626.0	NM_133832	98711.0	Mm.274376	NM_133832	ENSMUSG00000025921	Rdh10	3110069K09Rik|4921506A21Rik|AI875664|AW549993|D1Ertd762e|m366Asp	retinol dehydrogenase 10 (all-trans)	protein-coding	0.555764125285716	0.305176605568709	0.298212665737725	0.931705446647472	1.02413085325379	0.506444670166947	0.483312050068833	0.293768166068285	0.339077621777028	0.851268546339705	1
Merged-chr11-119190695-2	chr11	119190595	119190795	+	785.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347625, intron 3 of 11)	intron (NM_001347625, intron 3 of 11)	-36558.0	NR_105899	102465563.0		NR_105899	ENSMUSG00000098704	Mir6934	Gm27523|mmu-mir-6934	microRNA 6934	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-75318337-3	chr4	75318244	75318444	+	784.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-40052.0	NM_025849	66928.0	Mm.24332	NM_025849	ENSMUSG00000028398	Dmac1	1700027K24Rik|3110001D03Rik|Tmem261	distal membrane arm assembly complex 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46497101-3	chr8	46497011	46497211	+	884.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302163, intron 2 of 20)	intron (NM_001302163, intron 2 of 20)	6145.0	NM_001302163	14081.0	Mm.210323	NM_007981	ENSMUSG00000018796	Acsl1	Acas|Acas1|Acs|FACS|Facl2|LACS 1|LACS1	acyl-CoA synthetase long-chain family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167691549-4	chr2	167691436	167691636	+	984.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015500, intron 1 of 1)	intron (NR_015500, intron 1 of 1)	359.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-72690362-3	chr11	72690261	72690461	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009671, intron 1 of 24)	intron (NM_009671, intron 1 of 24)	359.0	NM_009671	11736.0	Mm.10313	NM_009671	ENSMUSG00000020790	Ankfy1	Ankhzn|ZFYVE14|mKIAA1255	ankyrin repeat and FYVE domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-79612310-1	chr1	79612210	79612410	+	577.0	f1_balb.idr	intron (NM_183027, intron 4 of 4)	intron (NM_183027, intron 4 of 4)	59662.0	NM_183027	252903.0	Mm.32409	NM_183027	ENSMUSG00000054702	Ap1s3	1190009B22|Jr2|[s]3A	adaptor-related protein complex AP-1, sigma 3	protein-coding	0.436208208898789	0.285962190121328	0.497002491495783	0.26658260739588	1.14057911936644	0.288380166358947	1.54863568973439	0.268081604315881	3.10704406275904	0.0964336566551278	0.48212679174263
Merged-chr3-121291069-1	chr3	121290969	121291169	+	605.0	f1_c57bl6.idr	promoter-TSS (NM_024178)	promoter-TSS (NM_024178)	-671.0	NR_155539	66789.0	Mm.269881	NM_024178	ENSMUSG00000039887	Alg14	5430428G01Rik|AI854024	asparagine-linked glycosylation 14	protein-coding	-0.759774980048027	-0.750081624241843	-0.753264287001813	-0.591792128902176	-0.613602395504119	-0.749363307878275	-0.752562893667864	-0.121391043361871	2.25213741504461	0.412452454751274	1
Merged-chr17-17600176-4	chr17	17600068	17600268	+	994.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172827, intron 1 of 17)	intron (NM_172827, intron 1 of 17)	24321.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-17689184-2	chr12	17689084	17689284	+	787.416626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J1|LTR|ERVL-MaLR	-1625.0	NM_001361645	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-118479395-5	chr6	118479244	118479444	+	796.26001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011763)	promoter-TSS (NM_011763)	-71.0	NM_011763	22750.0	Mm.106970	NM_011763	ENSMUSG00000072623	Zfp9	1810048F22Rik|AU016736|Krox-4|Zfp-9|mszf79-2	zinc finger protein 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-35770852-2	chr11	35770752	35770952	+	741.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_145962, intron 1 of 6)	intron (NM_145962, intron 1 of 6)	1357.0	NM_145962	211347.0	Mm.255044	NM_145962	ENSMUSG00000018846	Pank3	-	pantothenate kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-37666294-1	chr9	37666194	37666394	+	776.0	f1_balb.idr	intron (NM_172454, intron 2 of 3)	intron (NM_172454, intron 2 of 3)	2928.0	NM_172454	208098.0	Mm.217159	NM_172454	ENSMUSG00000011118	Panx3	3230401P04|4833413G11Rik	pannexin 3	protein-coding	-0.460684131208597	-0.446610451891369	-0.451203873149932	-0.454759269715245	-0.459800952140583	0.327975901932621	0.042374628261473	-0.454137421773338	3.68111255207799	0.160206024937432	1
Merged-chr6-43477910-2	chr6	43477810	43478010	+	671.583313	f1_balb.idr|f1_c57bl6.idr	intron (NM_013861, intron 6 of 8)	MLTR25C|LTR|ERVK	35481.0	NR_045988	319812.0	Mm.446393	NR_045988		9430018G01Rik	-	RIKEN cDNA 9430018G01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52581096-5	chr13	52581010	52581210	+	830.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2327.0	NM_001198977	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-27746263-2	chr15	27746163	27746363	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081302, intron 48 of 56)	intron (NM_001081302, intron 48 of 56)	-64721.0	NM_001242423	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75621587-2	chr11	75621487	75621687	+	638.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008850, intron 10 of 11)	intron (NM_008850, intron 10 of 11)	-9433.0	NM_008916	19062.0	Mm.1458	NM_008916	ENSMUSG00000006127	Inpp5k	C62|Pps|SKIP	inositol polyphosphate 5-phosphatase K	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-149072737-3	chr3	149072623	149072823	+	660.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-118088.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-125344922-2	chr5	125344822	125345022	+	931.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-3828.0	NM_001205083	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81474586-2	chr10	81474486	81474686	+	708.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001311126, exon 1 of 12)	5' UTR (NM_001311126, exon 1 of 12)	258.0	NM_001311126	319586.0	Mm.152689	NM_176954	ENSMUSG00000034818	Celf5	4930565A21Rik|Brunol5	CUGBP, Elav-like family member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85486139-4	chr12	85486050	85486250	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	12260.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-61815530-3	chr2	61815493	61815693	+	584.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	11140.0	NM_009322	21375.0	Mm.308525	NM_009322	ENSMUSG00000035033	Tbr1	-	T-box brain gene 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-79521641-2	chr11	79521541	79521741	+	777.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077496, intron 1 of 1)	intron (NM_001077496, intron 1 of 1)	2121.0	NM_001077496	216984.0	Mm.439665	NM_001077496	ENSMUSG00000093938	Evi2b	Evi-2|Evi2	ecotropic viral integration site 2b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-132071073-1	chr3	132070973	132071173	+	609.0	f0_balb.idr	Intergenic	B3|SINE|B2	-14219.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	-1.24679228174956	-1.0580969150156	-1.06841887957207	-1.23930927349003	-0.97586992030182	-1.21827172714058	-1.22849383795098	-1.23779157789024	-0.197989678473806	0.949813136471452	1
Merged-chr13-56758691-4	chr13	56758582	56758782	+	893.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55014.0	NM_001164042	17129.0	Mm.272920	NM_008541	ENSMUSG00000021540	Smad5	1110051M15Rik|AI451355|Dwf-C|Madh5|MusMLP	SMAD family member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-115830727-4	chr4	115830635	115830835	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175308, intron 1 of 3)	intron (NM_175308, intron 1 of 3)	2643.0	NM_175308	100465.0	Mm.35571	NM_175308	ENSMUSG00000028709	Mob3c	AW822253|D130076I06Rik|Mobkl2c	MOB kinase activator 3C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-59877232-1	chr4	59877132	59877332	+	677.0	f1_c57bl6.idr	intron (NM_172468, intron 3 of 8)	RLTR40|LTR|ERVK	37824.0	NM_021053	30936.0	Mm.284433	NM_021053	ENSMUSG00000028386	Slc46a2	5430429N04Rik|Ly110|TSO-1C12|Tscot	solute carrier family 46, member 2	protein-coding	1.54981419420874	1.76898167080377	1.70054890725662	1.64569500698695	1.09446351951335	2.65224941486915	0.926979397498517	0.906188326134877	0.0365395829547715	0.976533012172332	0.998431161219273
Merged-chr5-123934250-2	chr5	123934150	123934350	+	574.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001134767, exon 2 of 13)	exon (NM_001134767, exon 2 of 13)	3561.0	NM_001134767	208908.0	Mm.243679	NM_001134767	ENSMUSG00000061882	Ccdc62	AI661708|G1-485-3|Gm150|repro29	coiled-coil domain containing 62	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-33419649-2	chr4	33419549	33419749	+	878.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001305273, intron 13 of 15)	L1MA6|LINE|L1	-18432.0	NR_106198	102465904.0		NR_106198	ENSMUSG00000098310	Mir8118	Gm27954|mmu-mir-8118	microRNA 8118	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-89427358-4	chr15	89427257	89427457	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_004843, exon 8 of 27)	non-coding (NR_004843, exon 8 of 27)	-1495.0	NM_009948	12895.0	Mm.227738	NM_009948	ENSMUSG00000078937	Cpt1b	Cpt1|Cpt1-m|Cpti|Cpti-m|M-cpti	carnitine palmitoyltransferase 1b, muscle	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-53668457-3	chr7	53668346	53668546	+	950.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	223443.0	NR_105746	102466619.0		NR_105746	ENSMUSG00000099176	Mir6238	Gm27982|mmu-mir-6238	microRNA 6238	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-33959568-2	chr14	33959468	33959668	+	861.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_015745, intron 2 of 3)	intron (NM_015745, intron 2 of 3)	5565.0	NM_015745	19661.0	Mm.436622	NM_015745	ENSMUSG00000041534	Rbp3	Irbp|Rbp-3	retinol binding protein 3, interstitial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-20695766-2	chr18	20695666	20695866	+	748.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019737, intron 5 of 8)	intron (NM_019737, intron 5 of 8)	-30506.0	NR_155534	102633478.0		NR_155534	ENSMUSG00000085595	Gm16090	-	predicted gene 16090	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-12215099-1	chr15	12214999	12215199	+	548.0	f1_c57bl6.idr	intron (NM_001356498, intron 1 of 15)	intron (NM_001356498, intron 1 of 15)	10071.0	NM_172958	268783.0	Mm.54460	NM_172958	ENSMUSG00000039458	Mtmr12	3Pap|4932703C11|C730015A02Rik|Pip3ap|mKIAA1682	myotubularin related protein 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-80139663-2	chr12	80139563	80139763	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6819.0	NR_033514	69548.0	Mm.269712	NR_033514		2310015A10Rik	5330419I17Rik	RIKEN cDNA 2310015A10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-120532825-2	chr5	120532725	120532925	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177594, intron 14 of 14)	intron (NM_001177594, intron 14 of 14)	21633.0	NM_001177594	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102434608-2	chr12	102434508	102434708	+	990.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011175, intron 1 of 13)	ORR1A2|LTR|ERVL-MaLR	5205.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-47944864-3	chr18	47944764	47944964	+	870.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045404, intron 2 of 3)	intron (NR_045404, intron 2 of 3)	22023.0	NR_045404	414127.0	Mm.450768	NR_045404		G630055G22Rik	-	RIKEN cDNA G630055G22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-38467584-4	chr16	38467473	38467673	+	965.2708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359898, intron 1 of 5)	intron (NM_001359898, intron 1 of 5)	8640.0	NM_009855	12519.0	Mm.89474	NM_009855	ENSMUSG00000075122	Cd80	B71|Cd28l|Ly-53|Ly53|MIC17|TSA1	CD80 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-119882020-2	chr7	119881920	119882120	+	653.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163703, intron 1 of 2)	intron (NM_001163703, intron 1 of 2)	13438.0	NM_173408	233805.0	Mm.31539	NM_173408	ENSMUSG00000048787	Dcun1d3	1700020A13Rik|BC030335	DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-83185572-1	chr8	83185472	83185672	+	644.0	f0_balb.idr	intron (NM_001111304, intron 1 of 20)	intron (NM_001111304, intron 1 of 20)	20220.0	NM_027758	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	1.48514978096108	2.35515875908264	1.33779981241696	2.20876827852716	2.50167006344025	2.37293435259212	2.7153125929957	2.861460355872	1.63783466405864	0.0702555707180138	0.398668891361662
Merged-chr1-151039382-4	chr1	151039288	151039488	+	872.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-45953.0	NM_001024720	545370.0	Mm.379425	NM_001024720	ENSMUSG00000066842	Hmcn1	EG545370|FIBL-6|Gm201	hemicentin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25778548-2	chr7	25778448	25778648	+	563.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009465, intron 5 of 19)	intron (NM_009465, intron 5 of 19)	10185.0	NM_001190974	26362.0	Mm.4128	NM_009465	ENSMUSG00000002602	Axl	AI323647|Ark|Tyro7|Ufo	AXL receptor tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139323411-2	chr5	139323311	139323511	+	863.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172723, intron 1 of 10)	intron (NM_172723, intron 1 of 10)	2053.0	NM_172723	231821.0	Mm.297819	NM_172723	ENSMUSG00000056413	Adap1	4930431P11Rik|Centa1|GC1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-21300326-4	chr18	21300200	21300400	+	951.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033445)	promoter-TSS (NM_001033445)	-161.0	NM_001033445	381126.0	Mm.312276	NM_001033445	ENSMUSG00000042680	Garem1	C86169|Fam59a|Garem|Gm944|mKIAA4238	GRB2 associated regulator of MAPK1 subtype 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32632506-2	chr2	32632406	32632606	+	679.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001198791, intron 5 of 6)	intron (NM_001198791, intron 5 of 6)	3006.0	NM_021515	11636.0	Mm.29189	NM_021515	ENSMUSG00000026817	Ak1	Ak-1|B430205N08Rik	adenylate kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43256365-4	chr4	43256276	43256476	+	955.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081413, intron 29 of 39)	intron (NM_001081413, intron 29 of 39)	-10783.0	NM_177195	320571.0	Mm.74465	NM_177195	ENSMUSG00000028457	Atp8b5	4930417M19Rik|Feta	ATPase, class I, type 8B, member 5	protein-coding	3.89314287861685	3.77618570526535	2.81893019571008	2.86719003183481	4.60053386177349	3.44649651498681	2.98284119394891	3.83692870852558	0.632789599960541	0.290506479804348	0.79539026179457
Merged-chr13-42016176-2	chr13	42016076	42016276	+	579.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35845.0	NM_007772	110521.0	Mm.4808	NM_007772	ENSMUSG00000021366	Hivep1	Cryabp1	human immunodeficiency virus type I enhancer binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-65802511-4	chr17	65802343	65802543	+	918.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152099, intron 2 of 20)	intron (NR_152099, intron 2 of 20)	19088.0	NR_104465	70351.0	Mm.48686	NM_146081	ENSMUSG00000061950	Ppp4r1	3110001J10Rik|Pp4r1	protein phosphatase 4, regulatory subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-63536283-2	chr4	63536183	63536383	+	814.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER92B|LTR|ERV1	-8482.0	NM_024173	66290.0	Mm.371615	NM_024173	ENSMUSG00000039105	Atp6v1g1	1810024D14Rik|AA960677|ATP6J|Atp6g1|VAG1|Vma10	ATPase, H+ transporting, lysosomal V1 subunit G1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-3546882-3	chr13	3546796	3546996	+	624.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008112, intron 1 of 10)	RMER6A|LTR|ERVK	8821.0	NM_008112	14569.0	Mm.153226	NM_008112	ENSMUSG00000021218	Gdi2	GDI-B|GDIB|Gdi3	guanosine diphosphate (GDP) dissociation inhibitor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167314179-2	chr2	167314079	167314279	+	855.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_019835, intron 1 of 8)	intron (NM_019835, intron 1 of 8)	34999.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127091771-3	chr7	127091669	127091869	+	966.5277710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178901, intron 1 of 1)	intron (NM_178901, intron 1 of 1)	333.0	NM_178901	101602.0	Mm.490357	NM_178901	ENSMUSG00000045165	AI467606	-	expressed sequence AI467606	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-83585509-4	chr13	83585400	83585600	+	893.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347576, intron 2 of 10)	intron (NM_001347576, intron 2 of 10)	11893.0	NM_001347569	17260.0	Mm.24001	NM_025282	ENSMUSG00000005583	Mef2c	5430401D19Rik|9930028G15Rik|AV011172|Mef2	myocyte enhancer factor 2C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-145232759-4	chr5	145232658	145232858	+	899.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028298, intron 1 of 3)	intron (NM_028298, intron 1 of 3)	999.0	NM_028298	72611.0	Mm.206555	NM_028298	ENSMUSG00000007812	Zfp655	2700038I16Rik|9030409O18Rik|mKIAA4222	zinc finger protein 655	protein-coding	2.3750105642315	1.88025626677228	2.50312931217724	2.42929993211828	1.53339492977161	1.22480148426962	1.19641554588891	2.35597542351027	-1.62283540878816	0.123125489110232	0.550258114605622
Merged-chr5-143669991-2	chr5	143669891	143670091	+	842.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163548, intron 1 of 12)	intron (NM_001163548, intron 1 of 12)	18750.0	NM_001163548	19159.0	Mm.281003	NM_011182	ENSMUSG00000018001	Cyth3	AI648983|ARNO3|CLM3|Grp1|Pscd3	cytohesin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105332770-4	chr8	105332690	105332890	+	990.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177699, intron 13 of 21)	intron (NM_177699, intron 13 of 21)	6426.0	NM_025486	66320.0	Mm.29990	NM_025486	ENSMUSG00000014856	Tmem208	1700006C06Rik|2610030K20Rik|Hspc171	transmembrane protein 208	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-4567807-4	chr2	4567711	4567911	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177844, intron 2 of 11)	intron (NM_001177844, intron 2 of 11)	8057.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-88828500-4	chr13	88828414	88828614	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037987, intron 1 of 10)	intron (NM_001037987, intron 1 of 10)	7042.0	NM_001037987	13612.0	Mm.125580	NM_010103	ENSMUSG00000034488	Edil3	Del-1|Del1|Sox2-cre|Sox2Cre|Tg(Sox2-cre)1Amc	EGF-like repeats and discoidin I-like domains 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-13871152-4	chr6	13871071	13871271	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045995)	promoter-TSS (NR_045995)	347.0	NM_001352887	66520.0	Mm.29615	NM_183258		2610001J05Rik	C79299	RIKEN cDNA 2610001J05 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-45358403-3	chr13	45358298	45358498	+	982.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31344.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	0.461743480153376	0.496215304560684	1.36230783948194	0.672726547198019	0.463940750049737	1.33770402428132	1.3773515769393	0.477919898093473	0.789981373533738	0.648961722439044	0.985309421980721
Merged-chr1-74375553-1	chr1	74375453	74375653	+	1000.0	f0_balb.idr	intron (NM_013612, intron 1 of 14)	intron (NM_013612, intron 1 of 14)	350.0	NM_013612	18173.0	Mm.2913	NM_013612	ENSMUSG00000026177	Slc11a1	Bcg|Ity|Ity1|Lsh|Nramp|Nramp1|ity	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-129230407-4	chr6	129230311	129230511	+	990.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7634.0	NR_040265	76432.0	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-38641855-1	chr6	38641755	38641955	+	544.0	f1_balb.idr	Intergenic	Intergenic	-4616.0	NM_001033171	74253.0	Mm.121859	NM_001033171	ENSMUSG00000071537	Klrg2	2310020F24Rik	killer cell lectin-like receptor subfamily G, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-82967191-2	chr10	82967091	82967291	+	604.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18306.0	NM_021439	58250.0	Mm.360747	NM_021439	ENSMUSG00000034612	Chst11	1110020P09Rik|C4ST|C4ST-1|C4ST1|C4s	carbohydrate sulfotransferase 11	protein-coding	-1.18378942727406	-1.15669478905697	-0.457913181653105	-1.17806440097404	-1.18323730008524	-1.15415234459186	-1.16577117532349	-1.17633933179771	-2.81844548480871	0.412768592413622	1
Merged-chr17-36930458-1	chr17	36930358	36930558	+	873.0	f0_balb.idr	intron (NR_045439, intron 2 of 2)	intron (NR_045439, intron 2 of 2)	6666.0	NR_045439	73286.0	Mm.426884	NR_045439	ENSMUSG00000092239	1700031A10Rik	-	RIKEN cDNA 1700031A10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-110970659-4	chr11	110970552	110970752	+	971.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010604, intron 1 of 1)	MIRb|SINE|MIR	2619.0	NM_001252207	16517.0	Mm.30176	NM_010604	ENSMUSG00000051497	Kcnj16	6430410F18Rik|AI132396|Kir5.1	potassium inwardly-rectifying channel, subfamily J, member 16	protein-coding	1.23351888152995	0.639759473427556	0.622566388583556	2.21893050037083	1.24710637152271	1.4516537102117	0.626404977877286	0.611328738312221	-1.11329741976141	0.473327107100492	0.926125823511231
Merged-chr18-6490817-4	chr18	6490724	6490924	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001276350)	promoter-TSS (NM_001276350)	33.0	NM_027497	13831.0	Mm.312133	NM_007935	ENSMUSG00000024240	Epc1	2400007E14Rik|5730566F07Rik|A930032N02Rik|mir-1893	enhancer of polycomb homolog 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-77980291-2	chr10	77980191	77980391	+	582.516663	f1_balb.idr|f1_c57bl6.idr	intron (NM_026431, intron 2 of 6)	intron (NM_026431, intron 2 of 6)	1641.0	NM_026431	67884.0	Mm.297512	NM_026431	ENSMUSG00000020284	1810043G02Rik	AV026620|D10Jhu13e	RIKEN cDNA 1810043G02 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-80984097-4	chr8	80983985	80984185	+	999.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027554, intron 9 of 9)	intron (NM_027554, intron 9 of 9)	30821.0	NM_027554	74841.0	Mm.246018	NM_027554	ENSMUSG00000038250	Usp38	4631402N15Rik|4833420O05Rik|AA536967|AU044701|AW544820|mKIAA1891	ubiquitin specific peptidase 38	protein-coding	4.13767305703564	2.89547378477242	3.87747189106652	2.55699400898733	3.78080475664649	3.50473845033342	3.71017220675851	2.85576248108573	-0.0443219026944118	0.942397229136629	0.998431161219273
Merged-chr8-111157803-3	chr8	111157716	111157916	+	815.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009149, exon 26 of 26)	3' UTR (NM_009149, exon 26 of 26)	-12318.0	NR_040364	434350.0	Mm.442061	NR_040363		9430091E24Rik	-	RIKEN cDNA 9430091E24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-102658754-4	chr4	102658645	102658845	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	68902.0	NM_001177981	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	3.63512863897353	3.92474778052003	4.6861740636676	3.36816472331707	3.72617142410933	3.51860191187537	3.05216106473065	4.07865213588616	-0.49751167080421	0.349992468721461	0.850386723313101
Merged-chr7-4528154-4	chr7	4528060	4528260	+	842.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033548, intron 4 of 11)	intron (NM_001033548, intron 4 of 11)	4282.0	NM_001033548	436022.0	Mm.425359	NM_001033548	ENSMUSG00000055809	Dnaaf3	6030429G01Rik|b2b1739Clo	dynein, axonemal assembly factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-48949329-4	chr2	48949220	48949420	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177313)	promoter-TSS (NM_001177313)	-53.0	NR_149356	26428.0	Mm.291059	NM_011958	ENSMUSG00000026761	Orc4	Orc4P|Orc4l|mMmORC4	origin recognition complex, subunit 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-127208245-4	chr2	127208117	127208317	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198630)	promoter-TSS (NM_198630)	63.0	NM_198630	329509.0	Mm.120738	NM_198630	ENSMUSG00000044145	1810024B03Rik	-	RIKEN cDNA 1810024B03 gene	protein-coding	4.60296390126762	4.51310643056866	4.42359041234171	3.9838068173458	3.68748299903618	3.71419757031131	4.12522081021935	3.64838880924053	-0.807364192325778	0.0615492983645832	0.368374699922648
Merged-chr11-118249381-2	chr11	118249281	118249481	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001112699)	promoter-TSS (NM_001112699)	-789.0	NM_011180	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-91764495-4	chr12	91764396	91764596	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 1 of 6)	intron (NM_175367, intron 1 of 6)	21940.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-29525320-2	chr6	29525220	29525420	+	975.375	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1305.0	NM_001311083	27056.0	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171397700-3	chr1	171397617	171397817	+	809.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005508, intron 2 of 11)	intron (NM_001005508, intron 2 of 11)	8757.0	NM_001005508	226652.0	Mm.251048	NM_001005508	ENSMUSG00000048865	Arhgap30	6030405P05Rik|Gm102|mFLJ00267	Rho GTPase activating protein 30	protein-coding	-1.84456824087626	-1.81369603968745	-1.82303204814395	-1.83070092346192	-1.84240106943552	-1.51787681909439	-1.82091858046888	-1.82932819844659	1.64481029852639	0.639921510788462	1
Merged-chr6-53287267-4	chr6	53287177	53287377	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001327821)	promoter-TSS (NM_001327821)	-26.0	NM_001327821	231991.0	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122303551-4	chr5	122303430	122303630	+	912.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177242, intron 1 of 5)	intron (NM_177242, intron 1 of 5)	19132.0	NM_177242	320717.0	Mm.489670	NM_177242	ENSMUSG00000038582	Pptc7	9130017A15Rik|AA672638|AI848390|TA-PP2C	PTC7 protein phosphatase homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-59639252-4	chr16	59639164	59639364	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019665)	promoter-TSS (NM_019665)	75.0	NM_019665	56297.0	Mm.392505	NM_019665	ENSMUSG00000022722	Arl6	1110018H24Rik|2210411E14Rik|BBS3	ADP-ribosylation factor-like 6	protein-coding	5.95115535181289	6.09306416755922	6.10990952746422	5.35985188067822	6.47267590687716	5.86462891020319	6.57156290713501	5.77003989913281	0.342274972534741	0.200477361192046	0.684238776668547
Merged-chr9-55541112-4	chr9	55541014	55541214	+	946.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027397)	promoter-TSS (NM_027397)	-35.0	NM_027397	104360.0	Mm.273996	NM_027397	ENSMUSG00000032318	Isl2	3110001N10Rik	insulin related protein 2 (islet 2)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-59575337-3	chr4	59575267	59575467	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER5A|DNA|hAT-Charlie	-6196.0	NM_001301367	72479.0	Mm.272905	NM_024255	ENSMUSG00000028383	Hsdl2	2610207I16Rik	hydroxysteroid dehydrogenase like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-34963359-7	chr2	34963279	34963479	+	868.628601	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1607.0	NM_001326601	22029.0	Mm.239514	NM_009421	ENSMUSG00000026875	Traf1	4732496E14Rik	TNF receptor-associated factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33955741-2	chr16	33955641	33955841	+	702.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009471, exon 6 of 6)	3' UTR (NM_009471, exon 6 of 6)	11297.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-98957958-3	chr13	98957868	98958068	+	949.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26597.0	NM_027064	69382.0	Mm.45466	NM_027064	ENSMUSG00000045022	1700024P04Rik	H2bl1|Subh2bv	RIKEN cDNA 1700024P04 gene	protein-coding	5.42295035597852	4.87070062788459	5.16740632862132	5.87372225737818	3.35410343658121	1.76561733189494	2.45954011137438	1.58424339051557	-3.99462854980667	4.85930165293324e-05	0.00169154452316904
Merged-chr15-80220464-4	chr15	80220360	80220560	+	868.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13620.0	NM_001357659	239555.0	Mm.307163	NM_178719	ENSMUSG00000022412	Mief1	A230016E22|AI452372|Smcr7l	mitochondrial elongation factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-50345669-4	chr11	50345562	50345762	+	927.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12217.0	NR_030529	100049547.0		NR_030529	ENSMUSG00000076450	Mir804	Mirn804|mmu-mir-804	microRNA 804	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-97300858-2	chr7	97300758	97300958	+	839.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162477, intron 5 of 9)	intron (NM_001162477, intron 5 of 9)	25106.0	NM_001177412	244144.0	Mm.297541	NM_001177412	ENSMUSG00000035713	Usp35	Gm1088|Gm493	ubiquitin specific peptidase 35	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-102981055-3	chr9	102981014	102981214	+	690.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27375.0	NM_033314	24059.0	Mm.207106	NM_033314	ENSMUSG00000032548	Slco2a1	2310021C19Rik|Pgt|Slc21a2|mPgt	solute carrier organic anion transporter family, member 2a1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-101836040-2	chr5	101835940	101836140	+	860.833374	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172882, exon 67 of 67)	3' UTR (NM_172882, exon 67 of 67)	70910.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126752924-2	chr7	126752824	126753024	+	587.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-6702.0	NM_011952	26417.0	Mm.8385	NM_011952	ENSMUSG00000063065	Mapk3	Erk-1|Erk1|Ert2|Esrk1|Mnk1|Mtap2k|Prkm3|p44|p44erk1|p44mapk	mitogen-activated protein kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-108185908-3	chr3	108185778	108185978	+	826.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001287093)	promoter-TSS (NM_001287093)	-411.0	NM_001287093	229715.0	Mm.275752	NM_146137	ENSMUSG00000050947	Amigo1	Amigo|ali2	adhesion molecule with Ig like domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97442170-4	chr6	97442076	97442276	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	URR1A|DNA|hAT-Charlie	17110.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-128666589-4	chr4	128666485	128666685	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195130, intron 1 of 14)	intron (NM_001195130, intron 1 of 14)	11883.0	NM_001195130	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-139392275-2	chr7	139392175	139392375	+	581.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_183144, intron 1 of 15)	intron (NM_183144, intron 1 of 15)	3166.0	NM_001127363	212111.0	Mm.28308	NM_183144	ENSMUSG00000025477	Inpp5a	-	inositol polyphosphate-5-phosphatase A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-92826111-4	chr16	92826042	92826242	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001111021)	promoter-TSS (NM_001111021)	-68.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16311018-7	chr7	16310913	16311113	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133234, intron 1 of 3)	intron (NM_133234, intron 1 of 3)	1430.0	NM_133234	170770.0	Mm.7660	NM_133234	ENSMUSG00000002083	Bbc3	PUMA|PUMA/JFY1	BCL2 binding component 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-119836671-4	chr13	119836566	119836766	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6449.0	NM_001001449	380878.0	Mm.327311	NM_001001449	ENSMUSG00000094237	AF067063	-	cDNA sequence AF067063	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80743929-1	chr7	80743829	80744029	+	574.0	f1_balb.idr	exon (NM_016721, exon 17 of 38)	exon (NM_016721, exon 17 of 38)	-55052.0	NM_173863	70461.0	Mm.392175	NM_173863	ENSMUSG00000030527	Crtc3	2610312F20Rik|6332415K15Rik|AI429792|BC011210|TORC3	CREB regulated transcription coactivator 3	protein-coding	1.36937959040153	0.85738431820336	0.830374024968897	1.46120494219677	1.21607534592871	2.52638078680799	0.836442958184841	2.66441143853275	2.48267859763456	0.053486594681721	0.338585383217352
Merged-chr6-21998329-4	chr6	21998201	21998401	+	948.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081351, intron 1 of 21)	intron (NM_001081351, intron 1 of 21)	12391.0	NM_001081351	214642.0	Mm.221404	NM_001081351	ENSMUSG00000062980	Cped1	6720481P07|A430107O13Rik|AI552584	cadherin-like and PC-esterase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5488024-3	chr19	5487929	5488129	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_153768, exon 1 of 16)	non-coding (NR_153768, exon 1 of 16)	350.0	NM_027877	71711.0	Mm.27697	NM_027877	ENSMUSG00000024906	Mus81	1200008A18Rik|AI182501|AW045863	MUS81 structure-specific endonuclease subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-95914835-3	chr5	95914737	95914937	+	731.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42102.0	NM_018866	55985.0	Mm.10116	NM_018866	ENSMUSG00000023078	Cxcl13	4631412M08Rik|ANGIE2|Angie|BCA-1|BLC|BLR1L|Scyb13	chemokine (C-X-C motif) ligand 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-75612188-2	chr7	75612088	75612288	+	851.25	f0_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 7 of 36)	intron (NM_029332, intron 7 of 36)	156654.0	NM_029332	75547.0	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-108185437-4	chr10	108185335	108185535	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027892, intron 1 of 25)	intron (NM_027892, intron 1 of 25)	23035.0	NM_027892	17931.0	Mm.422959	NM_027892	ENSMUSG00000019907	Ppp1r12a	1200015F06Rik|5730577I22Rik|AA792106|AV099298|D10Ertd625e|Mypt1	protein phosphatase 1, regulatory (inhibitor) subunit 12A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-35043136-2	chr5	35043036	35043236	+	694.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019447, intron 4 of 13)	intron (NM_019447, intron 4 of 13)	1627.0	NM_019447	54426.0	Mm.27369	NM_019447	ENSMUSG00000029102	Hgfac	HGFA	hepatocyte growth factor activator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-58697836-2	chr1	58697732	58697932	+	603.833374	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-1843.0	NM_175370	108812.0	Mm.442063	NM_175370	ENSMUSG00000047528	Als2cr12	4933405P16Rik|4933425F06Rik	amyotrophic lateral sclerosis 2 chromosome region 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71183451-4	chr17	71183325	71183525	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022882)	promoter-TSS (NM_022882)	-107.0	NM_001357791	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-68033586-4	chr5	68033460	68033660	+	978.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001018019, intron 1 of 3)	intron (NM_001018019, intron 1 of 3)	1725.0	NM_001018019	433899.0	Mm.332422	NM_001018019	ENSMUSG00000068082	Grxcr1	Tg(Eno2-Gabrb3)0370Brll|pi|tde	glutaredoxin, cysteine rich 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3807615-5	chr12	3807467	3807667	+	907.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271753, intron 1 of 22)	intron (NM_001271753, intron 1 of 22)	407.0	NM_001271753	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-12204369-2	chr15	12204269	12204469	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172958)	promoter-TSS (NM_172958)	-659.0	NM_001356498	268783.0	Mm.54460	NM_172958	ENSMUSG00000039458	Mtmr12	3Pap|4932703C11|C730015A02Rik|Pip3ap|mKIAA1682	myotubularin related protein 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-112928575-2	chr12	112928475	112928675	+	606.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010588, intron 2 of 25)	CpG	920.0	NM_010588	16450.0	Mm.186146	NM_010588	ENSMUSG00000002799	Jag2	D12Ggc2e|Serh|mJagged2-1|sm	jagged 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-62220071-2	chr17	62219971	62220171	+	725.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	661246.0	NM_207654	13640.0	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-56800486-2	chr16	56800386	56800586	+	926.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-4628.0	NM_172825	239853.0	Mm.258979	NM_172825	ENSMUSG00000022755	Adgrg7	9130020O16Rik|Gpr128	adhesion G protein-coupled receptor G7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-40447363-3	chr12	40447279	40447479	+	937.888855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	1326.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-29168449-2	chr7	29168349	29168549	+	662.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_182927, intron 1 of 5)	intron (NM_182927, intron 1 of 5)	198.0	NM_182927	101809.0	Mm.377262	NM_182927	ENSMUSG00000037239	Spred3	AW047143|D130060H24Rik|Spred-3	sprouty-related, EVH1 domain containing 3	protein-coding	0.240265247543441	-0.16852267541762	0.118198297602904	-0.0299598580399458	0.0613045045985651	-0.167684067001417	-0.171410658844852	-0.0274131588294859	-1.21644641334597	0.571355859533094	1
Merged-chr19-45073970-2	chr19	45073870	45074070	+	646.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-1271.0	NM_001362398	107250.0	Mm.24417	NM_178929	ENSMUSG00000025213	Kazald1	AI842353|Bono1|IGFBP-rP10	Kazal-type serine peptidase inhibitor domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5698568-2	chr19	5698468	5698668	+	574.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_022012, intron 10 of 11)	MIR|SINE|MIR	-5903.0	NM_010609	16530.0	Mm.440033	NM_010609	ENSMUSG00000024936	Kcnk7	2310014G03Rik|Kcnk6|Kcnk8|Knot|Mlk3	potassium channel, subfamily K, member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83049027-2	chr6	83048927	83049127	+	658.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_106007)	promoter-TSS (NR_106007)	-684.0	NR_106007	102465630.0		NR_106007	ENSMUSG00000099035	Mir7040	Gm27489|mmu-mir-7040	microRNA 7040	ncRNA	0.546903213951749	0.383438107461483	1.74905038185837	0.355906379732929	0.553876444906409	0.386829515633077	1.76896942406283	0.358059064464706	0.0411086755966022	0.980877923420136	0.998431161219273
Merged-chr1-165648116-2	chr1	165648016	165648216	+	675.875	f1_balb.idr|f1_c57bl6.idr	TTS (NM_178593)	TTS (NM_178593)	-13575.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-79584684-2	chr14	79584584	79584784	+	720.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2976.0	NM_026474	67955.0	Mm.18972	NM_026474	ENSMUSG00000022024	Sugt1	2410174K12Rik|SGT1	SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-24712737-2	chr10	24712637	24712837	+	725.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008813)	promoter-TSS (NM_008813)	-578.0	NM_008813	18605.0	Mm.27254	NM_008813	ENSMUSG00000037370	Enpp1	4833416E15Rik|AI428932|C76301|CD203c|E-NPP 1|E-NPP1|Ly-41|M6S1|NPP1|Npps|PC-1|Pca|Pca-1|Pdnp1|ttw|twy	ectonucleotide pyrophosphatase/phosphodiesterase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-104425254-4	chr11	104425164	104425364	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001081045, exon 2 of 14)	5' UTR (NM_001081045, exon 2 of 14)	17027.0	NM_001081045	76719.0	Mm.136418	NM_001081045	ENSMUSG00000018412	Kansl1	1700081L11Rik|9430041J06Rik|mKIAA1267	KAT8 regulatory NSL complex subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139830856-4	chr5	139830751	139830951	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-3957.0	NM_025604	66506.0	Mm.29070	NM_025604	ENSMUSG00000029551	Psmg3	1810042K04Rik|4930403H09Rik|AI303239	proteasome (prosome, macropain) assembly chaperone 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115548056-1	chr5	115547956	115548156	+	548.0	f1_c57bl6.idr	intron (NM_011223, intron 6 of 10)	intron (NM_011223, intron 6 of 10)	-11411.0	NM_007475	11837.0	Mm.5286	NM_007475	ENSMUSG00000067274	Rplp0	36B4|Arbp|L10E	ribosomal protein, large, P0	protein-coding	1.09953212496162	1.83708248491746	0.491680731301364	0.479550189020406	0.668302005930002	1.67049282167948	0.495096540791459	0.48169028240678	-0.584818686389077	0.724120232035508	0.998431161219273
Merged-chr9-44513280-4	chr9	44513184	44513384	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007551, exon 2 of 2)	exon (NM_007551, exon 2 of 2)	13137.0	NM_007551	12145.0	Mm.6246	NM_007551	ENSMUSG00000047880	Cxcr5	Blr1|CXC-R5|CXCR-5|Gpcr6|MDR15	chemokine (C-X-C motif) receptor 5	protein-coding	3.10666640506905	3.5611136599747	3.8364450802833	3.00042515089689	3.05071078269071	2.51941520993512	3.61730059290314	2.90921969007032	-0.538037661234	0.382368867361091	0.873396688145393
Merged-chr12-3572375-7	chr12	3572262	3572462	+	968.514282	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_149729)	promoter-TSS (NR_149729)	-29.0	NM_001162465	13528.0	Mm.286202	NM_007886	ENSMUSG00000071454	Dtnb	-	dystrobrevin, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-11249229-2	chr8	11249129	11249329	+	649.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009931, intron 2 of 51)	intron (NM_009931, intron 2 of 51)	-63576.0	NM_009932	12827.0	Mm.181021	NM_009932	ENSMUSG00000031503	Col4a2	Col4a-2	collagen, type IV, alpha 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-59960322-4	chr2	59960221	59960421	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001182, intron 9 of 35)	intron (NM_001001182, intron 9 of 35)	-77715.0	NM_028118	72137.0	Mm.288734	NM_028118	ENSMUSG00000026988	Wdsub1	1700048E19Rik|2610014F08Rik	WD repeat, SAM and U-box domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46845154-4	chr8	46845037	46845237	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152560, intron 7 of 7)	intron (NR_152560, intron 7 of 7)	105392.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-79243969-2	chr2	79243869	79244069	+	558.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11457.0	NM_010576	16401.0	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-25475001-4	chr14	25474912	25475112	+	929.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	15827.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-116216900-3	chr9	116216816	116217016	+	958.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	27736.0	NR_152204	100043817.0	Mm.404276	NR_152204		Gm4668	-	predicted gene 4668	ncRNA	1.22520369685038	0.459469278656316	1.72591497447992	0.436319668457191	1.32902548752122	0.462347888828531	0.44940200237153	0.438115465608017	-1.36976526942399	0.448261088873748	0.91497729573107
Merged-chr19-32903918-4	chr19	32903820	32904020	+	973.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	146343.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	4.12645606274209	3.05174753227002	4.4934384390876	4.79394350489054	3.72599960944957	3.0769048453847	4.38169529418955	4.25677443470114	-0.413112235296613	0.428795741854908	0.903416445927044
Merged-chr6-112752729-2	chr6	112752636	112752836	+	670.125	f0_balb.idr|f0_c57.idr	intron (NM_080448, intron 12 of 21)	intron (NM_080448, intron 12 of 21)	-56066.0	NM_001167730	58186.0	Mm.103812	NM_021385	ENSMUSG00000030254	Rad18	2810024C04Rik|Rad18sc	RAD18 E3 ubiquitin protein ligase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-59127146-4	chr3	59127052	59127252	+	738.974976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001287119, intron 1 of 2)	Charlie1|DNA|hAT-Charlie	3610.0	NM_001287124	140795.0	Mm.439021	NM_133200	ENSMUSG00000036381	P2ry14	A330108O13Rik|Gpr105|P2Y14	purinergic receptor P2Y, G-protein coupled, 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-43525254-1	chr19	43525154	43525354	+	811.166687	f0_balb.idr	promoter-TSS (NM_010324)	promoter-TSS (NM_010324)	-649.0	NM_010324	14718.0	Mm.19039	NM_010324	ENSMUSG00000025190	Got1	AI789014|Got-1|cAspAT|cCAT	glutamic-oxaloacetic transaminase 1, soluble	protein-coding	0.227161276193592	0.581152877987772	0.10071838307894	0.704240908003728	0.352514562156251	0.107294335543961	0.275676974345157	0.0973074922097095	-1.69705944829744	0.388153227623985	1
Merged-chr5-105685085-4	chr5	105684990	105685190	+	973.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14879.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-33658554-4	chr5	33658518	33658718	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356983)	promoter-TSS (NM_001356983)	490.0	NM_001040435	21335.0	Mm.379024	NM_011524	ENSMUSG00000037313	Tacc3	Aint|C86661|Eric1	transforming, acidic coiled-coil containing protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-44233185-9	chr4	44233085	44233285	+	929.388916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11918.0	NR_039565	100628618.0		NR_039565	ENSMUSG00000092677	Mir5106	mir-5106|mmu-mir-5106|mu-mir-5106	microRNA 5106	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-21234180-1	chr13	21234080	21234280	+	789.0	f0_balb.idr	Intergenic	Intergenic	54249.0	NM_009054	19720.0	Mm.314056	NM_009054	ENSMUSG00000021326	Trim27	AW538890|Gm19403|Rfp	tripartite motif-containing 27	protein-coding	-0.750328199413963	-0.740646884165465	-0.567661917901906	-0.121578056473414	-0.604707414873799	-0.739929218746028	-0.743125649673515	-0.745846911063892	-2.24565356580446	0.414229600563638	1
Merged-chr3-121549898-2	chr3	121549798	121549998	+	750.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17554.0	NM_145394	213603.0	Mm.33062	NM_145394	ENSMUSG00000039865	Slc44a3	BC010552	solute carrier family 44, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-165648691-2	chr1	165648591	165648791	+	547.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_178593)	TTS (NM_178593)	-14150.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-45086522-3	chr2	45086405	45086605	+	854.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355291, intron 2 of 9)	CT-rich|Low_complexity|Low_complexity	23772.0	NM_001289521	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-115689609-4	chr3	115689509	115689709	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25446.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	5.44300215596013	4.99612906756729	5.57692040933816	5.25310677240712	5.52231972568662	5.15807785471559	5.6130142032134	4.54688422125394	-0.0764432209027186	0.811094595396683	0.998431161219273
Merged-chr15-80011985-3	chr15	80011959	80012159	+	970.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011057, intron 1 of 6)	intron (NM_011057, intron 1 of 6)	2749.0	NM_011057	18591.0	Mm.144089	NM_011057	ENSMUSG00000000489	Pdgfb	PDGF-B|Sis	platelet derived growth factor, B polypeptide	protein-coding	0.573646237887453	0.132498419414085	0.126955318927698	0.122683832522041	0.749818642165937	0.324499115029076	0.128177220358357	0.540938148432366	1.45119239335197	0.479388292950574	1
Merged-chr11-16989355-2	chr11	16989255	16989455	+	904.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019549, intron 5 of 9)	RMER21B|LTR|ERV1	19363.0	NM_019549	56193.0	Mm.98232	NM_019549	ENSMUSG00000020120	Plek	2010300B13Rik	pleckstrin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-95799661-3	chr13	95799597	95799797	+	708.777771	f0_balb.idr|f0_c57.idr|f1_balb.idr	intron (NM_027711, intron 2 of 35)	L2b|LINE|L2	92225.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-25041889-2	chr9	25041789	25041989	+	896.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	67681.0	NR_153861	102631612.0	Mm.410759	NR_153861		E130101E03Rik	-	RIKEN cDNA E130101E03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-20949556-1	chr5	20949456	20949656	+	549.0	f1_c57bl6.idr	intron (NM_001080977, intron 1 of 7)	intron (NM_001080977, intron 1 of 7)	-1433.0	NR_030699	320770.0	Mm.491217	NR_030699	ENSMUSG00000101013	A630072M18Rik	Aptr	RIKEN cDNA A630072M18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126844147-2	chr8	126844047	126844247	+	691.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-4873.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-79482167-3	chr17	79482106	79482306	+	877.888855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4321.0	NR_033463	74622.0	Mm.311921	NR_033463		4930429F11Rik	-	RIKEN cDNA 4930429F11 gene	ncRNA	2.15362088660211	2.76830425658182	2.35079352958376	1.33110866884446	1.75590350399264	1.41935195289511	1.76148315123054	1.09431319515768	-1.92688183705238	0.0709694819525251	0.401142514666958
Merged-chr7-132815012-2	chr7	132814912	132815112	+	864.1666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1816.0	NM_212473	77938.0	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111675899-4	chr12	111675786	111675986	+	958.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2219.0	NM_001099792	328162.0	Mm.425747	NM_177374	ENSMUSG00000060950	Trmt61a	6720458F09Rik|AI606093|Gcd14|Trm61	tRNA methyltransferase 61A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-31471556-3	chr6	31471446	31471646	+	589.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013791, intron 10 of 17)	ORR1F|LTR|ERVL-MaLR	72718.0	NM_013791	27418.0	Mm.238038	NM_013791	ENSMUSG00000025609	Mkln1	A130067F06Rik|AU015903|BB154892	muskelin 1, intracellular mediator containing kelch motifs	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-51762201-4	chr11	51762098	51762298	+	805.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1465.0	NM_025535	66397.0	Mm.196592	NM_025535	ENSMUSG00000020386	Sar1b	2310075M17Rik|2900019I22Rik|CMRD|Sara1b|Sara2|Sarb	secretion associated Ras related GTPase 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-111980442-4	chr13	111980339	111980539	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	112503.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	5.61001375631629	5.30498927768609	5.59163026613764	5.31280734946629	6.75613580018244	6.43907356108273	5.28869482434801	6.34422478249839	0.932685412824629	0.00158054689821968	0.0281913801063029
Merged-chr15-64031516-2	chr15	64031416	64031616	+	623.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360037, intron 1 of 11)	intron (NM_001360037, intron 1 of 11)	28248.0	NM_001360038	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-21934330-2	chr3	21934230	21934430	+	665.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-142322.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-128820664-3	chr4	128820565	128820765	+	741.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Zaphod3|DNA|hAT-Tip100	-14553.0	NM_001081098	230761.0	Mm.22616	NM_001081098	ENSMUSG00000028799	Zfp362	-	zinc finger protein 362	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135118635-4	chr5	135118535	135118735	+	865.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152882, intron 2 of 16)	intron (NR_152882, intron 2 of 16)	11744.0	NR_152882	58805.0	Mm.34213	NM_021455	ENSMUSG00000005373	Mlxipl	ChREBP|Mlx|WS-bHLH|Wbscr14|bHLHd14	MLX interacting protein-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80656593-4	chr10	80656505	80656705	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_145361, exon 1 of 9)	5' UTR (NM_145361, exon 1 of 9)	466.0	NM_145361	208198.0	Mm.60720	NM_145361	ENSMUSG00000003344	Btbd2	2610037C03Rik|4930512K17Rik	BTB (POZ) domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-45534494-2	chr5	45534394	45534594	+	772.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_021416, intron 12 of 15)	intron (NM_021416, intron 12 of 15)	14265.0	NM_025895	66999.0	Mm.283045	NM_025895	ENSMUSG00000015804	Med28	1500003D12Rik|AI451633|AU045690|Eg1|FKSG20|magicin	mediator complex subunit 28	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-34644637-3	chr13	34644491	34644691	+	566.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025831, intron 1 of 4)	intron (NM_025831, intron 1 of 4)	8090.0	NM_025831	66895.0	Mm.28943	NM_025831	ENSMUSG00000021411	Pxdc1	1300014I06Rik	PX domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69880353-2	chr11	69880253	69880453	+	554.5	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_153143, exon 1 of 1)	5' UTR (NM_153143, exon 1 of 1)	632.0	NM_153143	216858.0	Mm.239498	NM_153143	ENSMUSG00000046731	Kctd11	AF465352|Ren	potassium channel tetramerisation domain containing 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-156069654-1	chr2	156069554	156069754	+	684.0	f1_balb.idr	TTS (NM_139151)	TTS (NM_139151)	4441.0	NM_139151	245865.0	Mm.330713	NM_139151	ENSMUSG00000038180	Spag4	1700041K21Rik|MNCb-0953|Sun4|mKIAA4118	sperm associated antigen 4	protein-coding	-1.58994551673671	-1.55912852307891	-1.56844783632235	-1.57610299769523	-1.18549093183599	-1.55710898902261	-1.56633814807757	-1.57473272746952	1.78703309985663	0.610309988231842	1
Merged-chr19-16784181-2	chr19	16784081	16784281	+	750.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MD|LINE|L1	-3248.0	NM_173028	271564.0	Mm.211963	NM_173028	ENSMUSG00000046230	Vps13a	4930425F11|4930516E05Rik|4930543C13Rik|9930023P20|Chac|Chorein|D330038K10Rik|mKIAA0986	vacuolar protein sorting 13A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-5132306-2	chr18	5132206	5132406	+	551.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	33425.0	NR_153824	102637682.0	Mm.451914	NR_153824		Gm26682	Gm38715	predicted gene, 26682	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-30693807-4	chr6	30693719	30693919	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031998)	promoter-TSS (NM_031998)	-70.0	NR_130775	83922.0	Mm.65389	NM_031998	ENSMUSG00000029790	Cep41	1700017E11Rik|2810431D15Rik|Tsga14	centrosomal protein 41	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-20216588-2	chr11	20216488	20216688	+	793.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008996, intron 2 of 5)	B2_Mm2|SINE|B2	15176.0	NM_008996	19324.0	Mm.271944	NM_008996	ENSMUSG00000020149	Rab1a	Gtbp|Rab-1|Rab1|Ypt1|mKIAA3012	RAB1A, member RAS oncogene family	protein-coding	0.811656630246688	0.263060329987755	1.02743921518259	0.25110386176842	0.520833555366815	0.264578004012894	0.441182913641918	0.421434929540948	-1.45256149429685	0.42888457399554	1
Merged-chr17-88115031-2	chr17	88114931	88115131	+	943.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-10481.0	NM_001190356	225058.0	Mm.312053	NM_001190356		Gm4832	EG225058	predicted gene 4832	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135470446-3	chr5	135470268	135470468	+	792.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146001, intron 1 of 30)	intron (NM_146001, intron 1 of 30)	74754.0	NM_146001	215114.0	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97659667-4	chr11	97659575	97659775	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3737.0	NM_139311	246198.0	Mm.23685	NM_139311	ENSMUSG00000038437	Mllt6	AI315037|Af17	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-120116233-4	chr9	120116137	120116337	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144793, intron 1 of 6)	intron (NM_144793, intron 1 of 6)	5838.0	NM_144793	208638.0	Mm.236656	NM_144793	ENSMUSG00000032519	Slc25a38	AV019094|BC010801|appoptosin	solute carrier family 25, member 38	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-12208337-3	chr2	12208238	12208438	+	888.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001309, intron 13 of 29)	intron (NM_001001309, intron 13 of 29)	-92908.0	NR_040353	338535.0	Mm.483275	NR_040353	ENSMUSG00000086843	E030013I19Rik	-	RIKEN cDNA E030013I19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-61207089-2	chr10	61206989	61207189	+	580.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081127, intron 16 of 21)	intron (NM_001081127, intron 16 of 21)	31827.0	NM_023064	65971.0	Mm.30227	NM_023064	ENSMUSG00000020096	Tbata	1700021K02Rik|AI428928|Spatial|Titest	thymus, brain and testes associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-52221780-4	chr6	52221644	52221844	+	971.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-3171.0	NM_010455	15404.0	Mm.294826	NM_010455	ENSMUSG00000038236	Hoxa7	AV118143|Hox-1.1|M6	homeobox A7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83013705-3	chr6	83013618	83013818	+	810.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033079, intron 7 of 9)	intron (NM_033079, intron 7 of 9)	19753.0	NM_010070	13448.0	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	1.28904604566806	1.44741112335817	2.28121963838978	2.97308396186511	3.05181236237642	2.91115899174412	2.70185846304101	3.54897993507228	1.71350397103667	0.0499049577636192	0.325663636018437
Merged-chr17-46383593-4	chr17	46383490	46383690	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207671)	promoter-TSS (NM_207671)	-176.0	NM_207671	57908.0	Mm.439916	NM_021346	ENSMUSG00000015597	Zfp318	2610034E08Rik|D530032D06Rik|TZF|Znf318	zinc finger protein 318	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-4532537-4	chr7	4532436	4532636	+	926.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033548)	promoter-TSS (NM_001033548)	-94.0	NM_001033548	436022.0	Mm.425359	NM_001033548	ENSMUSG00000055809	Dnaaf3	6030429G01Rik|b2b1739Clo	dynein, axonemal assembly factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-142640274-1	chr3	142640174	142640374	+	578.0	f0_balb.idr	Intergenic	MTEa-int|LTR|ERVL-MaLR	-16328.0	NR_105802	102465200.0		NR_105802	ENSMUSG00000098871	Mir6381	Gm27963|mmu-mir-6381	microRNA 6381	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-3030179-4	chr9	3030086	3030286	+	809.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GSAT_MM|Satellite|Satellite	8557.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-9773341-4	chr1	9773287	9773487	+	883.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24743.0	NM_133220	170755.0	Mm.336410	NM_133220	ENSMUSG00000025915	Sgk3	2510015P22Rik|A330005P07Rik|Cisk|fy|fz	serum/glucocorticoid regulated kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-102946232-3	chr2	102946135	102946335	+	738.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44570.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-42505176-2	chr7	42505076	42505276	+	943.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001309388, intron 1 of 6)	intron (NM_001309388, intron 1 of 6)	577.0	NM_001309389	434178.0	Mm.333810	NM_001309388	ENSMUSG00000092416	Zfp141	-	zinc finger protein 141	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-138846666-4	chr7	138846608	138846808	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027115)	promoter-TSS (NM_027115)	322.0	NM_026391	52432.0	Mm.258739	NM_026391	ENSMUSG00000041769	Ppp2r2d	1300017E19Rik|D7Ertd753e|MDS026	protein phosphatase 2, regulatory subunit B, delta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-92465650-4	chr5	92465558	92465758	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007644, intron 2 of 11)	intron (NM_007644, intron 2 of 11)	7101.0	NR_105843	102466159.0		NR_105843	ENSMUSG00000099160	Mir6415	Gm27714|mmu-mir-6415	microRNA 6415	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-80722851-4	chr1	80722759	80722959	+	954.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175291, intron 1 of 55)	intron (NM_175291, intron 1 of 55)	35694.0	NM_175291	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-156850678-4	chr2	156850579	156850779	+	915.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291124, intron 2 of 3)	intron (NM_001291124, intron 2 of 3)	10672.0	NM_173396	228839.0	Mm.315625	NM_173396	ENSMUSG00000062175	Tgif2	4921501K24|5730599O09Rik|C80753|C81206	TGFB-induced factor homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-9161722-4	chr5	9161628	9161828	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011806)	promoter-TSS (NM_011806)	48.0	NR_152860	23857.0	Mm.22480	NM_011806	ENSMUSG00000042508	Dmtf1	Dimp|Dmp1	cyclin D binding myb-like transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-25492976-4	chr12	25492837	25493037	+	712.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	363763.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-113115451-3	chr12	113115317	113115517	+	941.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346696, intron 2 of 19)	MTE2a|LTR|ERVL-MaLR	17139.0	NM_054081	116870.0	Mm.212577	NM_054081	ENSMUSG00000021144	Mta1	-	metastasis associated 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-151581823-4	chr1	151581716	151581916	+	895.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022018, intron 1 of 13)	HAL1M8|LINE|L1	10443.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69062275-2	chr11	69062175	69062375	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_028005)	TTS (NM_028005)	2500.0	NM_028005	71923.0	Mm.340257	NM_028005	ENSMUSG00000045176	Borcs6	2310047M10Rik	BLOC-1 related complex subunit 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-45108712-2	chr4	45108612	45108812	+	646.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001134646)	promoter-TSS (NM_001134646)	-599.0	NM_001099675	68512.0	Mm.282081	NM_001099675	ENSMUSG00000078713	Tomm5	1110019J04Rik|Tom5	translocase of outer mitochondrial membrane 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-13690575-4	chr6	13690477	13690677	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12611.0	NM_175312	101148.0	Mm.354863	NM_175312	ENSMUSG00000042742	Bmt2	AI666701|B630005N14Rik	base methyltransferase of 25S rRNA 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71558430-2	chr8	71558328	71558528	+	986.599976	f1_balb.idr|f1_c57bl6.idr	intron (NM_001100462, intron 1 of 3)	intron (NM_001100462, intron 1 of 3)	443.0	NM_001100462	434325.0	Mm.33613	NM_001100462	ENSMUSG00000043664	Tmem221	-	transmembrane protein 221	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-34656586-2	chr13	34656486	34656686	+	696.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_105041, intron 2 of 3)	intron (NR_105041, intron 2 of 3)	3663.0	NR_105041	101056149.0	Mm.421309	NR_105041	ENSMUSG00000086786	Gm15908	-	predicted gene 15908	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124570281-2	chr6	124570181	124570381	+	711.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113356)	promoter-TSS (NM_001113356)	-149.0	NM_001113356	667277.0	Mm.481484	NM_001113356	ENSMUSG00000098470	C1rb	Gm8551|mC1rB	complement component 1, r subcomponent B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-61579660-4	chr11	61579493	61579693	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010148)	promoter-TSS (NM_010148)	94.0	NM_010148	13855.0	Mm.139695	NM_010148	ENSMUSG00000001036	Epn2	9530051D10Rik|AA536924|Ibp2	epsin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-73890153-2	chr12	73890053	73890253	+	723.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16A|LTR|ERVL	-11171.0	NM_001313920	15251.0	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84220310-4	chr8	84220205	84220405	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172503, intron 10 of 13)	intron (NM_172503, intron 10 of 13)	-11398.0	NR_037294	100526528.0		NR_037294	ENSMUSG00000105458	Mir3074-2	mir-3074-2|mmu-mir-3074-2	microRNA 3074-2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127120648-2	chr10	127120548	127120748	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177614, intron 1 of 13)	intron (NM_177614, intron 1 of 13)	512.0	NM_177614	216440.0	Mm.295246	NM_177614	ENSMUSG00000040462	Os9	4632413K17Rik|AU022351	amplified in osteosarcoma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-103332931-2	chr15	103332831	103333031	+	810.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356627, intron 2 of 7)	intron (NM_001356627, intron 2 of 7)	1407.0	NM_001356627	29813.0	Mm.14099	NM_013866	ENSMUSG00000000552	Zfp385a	Hzf|Zfp385|Znf385a	zinc finger protein 385A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-29210163-4	chr19	29210063	29210263	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41640.0	NM_001048177	16452.0	Mm.275839	NM_008413	ENSMUSG00000024789	Jak2	Fd17	Janus kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-155086452-4	chr4	155086347	155086547	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026395)	promoter-TSS (NM_026395)	-130.0	NM_001081100	76866.0	Mm.200590	NM_001081100	ENSMUSG00000029049	Morn1	2900057D20Rik|4930417P05Rik|AU042805	MORN repeat containing 1	protein-coding	6.76518468322857	6.88163534838903	6.93905838468718	6.92463158244021	6.81486657721276	7.10434413433237	6.98941289882477	6.8982528431288	0.0783015946206048	0.64394294844612	0.983220888090013
Merged-chr17-56164538-2	chr17	56164438	56164638	+	681.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025566, intron 1 of 1)	intron (NM_025566, intron 1 of 1)	2047.0	NM_025566	66443.0	Mm.2312	NM_025566	ENSMUSG00000044469	Tnfaip8l1	2600017J23Rik|TIPE1	tumor necrosis factor, alpha-induced protein 8-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-37137153-4	chr10	37137061	37137261	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008538, intron 1 of 1)	CpG	1765.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-62867789-1	chr14	62867689	62867889	+	626.0	f1_c57bl6.idr	intron (NM_175546, intron 1 of 11)	MLT1B|LTR|ERVL-MaLR	2247.0	NR_105860	102465311.0		NR_105860	ENSMUSG00000098858	Mir6541	Gm27311|mmu-mir-6541	microRNA 6541	ncRNA	0.802483926226682	0.403554400187284	0.682976250320746	2.78283798309839	1.28610795159989	0.408753785114147	0.385096101019768	0.363864899865914	-2.65577436752495	0.0874156545056355	0.454293830244852
Merged-chr11-21540276-4	chr11	21540157	21540357	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-29077.0	NR_028259	237694.0	Mm.72926	NM_172792	ENSMUSG00000078962	4932414J04Rik	-	RIKEN cDNA 4932414J04 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-123572137-4	chr4	123572043	123572243	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199137, intron 1 of 92)	intron (NM_001199137, intron 1 of 92)	-44277.0	NR_105824	102465214.0		NR_105824	ENSMUSG00000099005	Mir6398	Gm27657|mmu-mir-6398	microRNA 6398	ncRNA	4.78169381883449	4.07039496618617	4.66047858334713	4.49861318138877	4.81589276561315	4.02178633446653	2.86590341859638	4.51977329044504	-0.367254362691197	0.437277409448412	0.908551975084304
Merged-chr11-86822996-4	chr11	86822906	86823106	+	911.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-15346.0	NM_026191	67487.0	Mm.260627	NM_026191	ENSMUSG00000018425	Dhx40	2410016C14Rik|ARG147|DDX40|PAD	DEAH (Asp-Glu-Ala-His) box polypeptide 40	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-25074994-4	chr19	25074898	25075098	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028785, intron 4 of 47)	intron (NM_028785, intron 4 of 47)	75469.0	NM_028785	76088.0	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-59893758-2	chr10	59893658	59893858	+	742.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019965, intron 5 of 8)	B1F2|SINE|Alu	14167.0	NM_019965	56709.0	Mm.103610	NM_019965	ENSMUSG00000020109	Dnajb12	Dj10|mDj10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-115458263-4	chr9	115458099	115458299	+	967.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	76380.0	NR_130329	100316675.0		NR_130329	ENSMUSG00000080409	Mir467h	Mirn467h|mmu-mir-467h	microRNA 467h	ncRNA	-2.18243820993087	-2.15538464093652	-2.16356586349869	-2.17028616330028	-2.18053909940952	-2.15361173587851	-2.16171381403791	-2.0403552525549	0.759018020146679	0.829933115115583	1
Merged-chr10-111925664-4	chr10	111925555	111925755	+	779.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47040.0	NM_178610	52705.0	Mm.34606	NM_178610	ENSMUSG00000063334	Krr1	2610511F02Rik|AI255219|AI428520|D10Ertd773e|Hrb2	KRR1, small subunit (SSU) processome component, homolog (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-148940773-4	chr4	148940660	148940860	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027195, intron 11 of 15)	intron (NM_027195, intron 11 of 15)	11562.0	NR_154553	108168987.0	Mm.393596	NR_154553		Gm13205	AA408865	predicted gene 13205	ncRNA	4.93835513954569	5.16559816583834	2.99387096384645	4.71687814969741	4.49429218453567	4.71594781941581	4.30571461168165	3.29832504352279	-0.467608812996923	0.353724170904972	0.853132398390271
Merged-chr2-48028068-2	chr2	48027968	48028168	+	582.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-786041.0	NM_007396	11480.0	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-137530355-2	chr5	137530255	137530455	+	598.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_105846)	promoter-TSS (NR_105846)	-761.0	NR_105846	102465227.0		NR_105846	ENSMUSG00000098597	Mir6418	Gm27629|mir-6418|mmu-mir-6418	microRNA 6418	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-6162894-3	chr2	6162761	6162961	+	633.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29978.0	NR_033471	100038358.0	Mm.353975	NR_033470	ENSMUSG00000102887	Gm10857	AU015850	predicted gene 10857	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-62252487-4	chr18	62252389	62252589	+	876.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Rod|LINE|L1	-71715.0	NM_008313	15562.0	Mm.20440	NM_008313	ENSMUSG00000026322	Htr4	5-HT-4|5-HT4|5-HT<4L>|5HTR4	5 hydroxytryptamine (serotonin) receptor 4	protein-coding	1.03511353511617	1.12624761378032	2.14533723726512	1.96412738174902	1.87173594151727	1.40887757681693	2.16373774033823	2.84975282913091	1.31450092666845	0.242160038590931	0.739349184581178
Merged-chr13-5778391-4	chr13	5778337	5778537	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	79655.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-89200495-4	chr9	89200406	89200606	+	926.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007534, intron 1 of 1)	intron (NM_007534, intron 1 of 1)	1233.0	NM_007534	12045.0	Mm.479217	NM_007534	ENSMUSG00000089929	Bcl2a1b	A1-b	B cell leukemia/lymphoma 2 related protein A1b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-52513480-2	chr12	52513380	52513580	+	672.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD-int|LTR|ERVL-MaLR	-2597.0	NM_009706	11855.0	Mm.35059	NM_009706	ENSMUSG00000035133	Arhgap5	p190-B|p190B	Rho GTPase activating protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-4703082-2	chr13	4702982	4703182	+	716.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-93918.0	NM_018859	56043.0	Mm.251908	NM_018859	ENSMUSG00000045410	Akr1e1	1810061I10Rik|Akr1e2	aldo-keto reductase family 1, member E1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-127264113-3	chr6	127264131	127264331	+	756.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43736.0	NR_073373	232386.0	Mm.257367	NR_073373	ENSMUSG00000107153	Gm38404	D130058E03	predicted gene, 38404	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-80083451-4	chr15	80083357	80083557	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013762)	promoter-TSS (NM_013762)	-51.0	NM_013762	27367.0	Mm.290771	NM_013762	ENSMUSG00000060036	Rpl3	F2|J1	ribosomal protein L3	protein-coding	3.55627069149762	3.30443676250594	2.95382611960622	3.29217098367966	3.52202965564073	4.51871058065836	3.10270685046756	3.69536322864754	0.775333148070173	0.168955445811037	0.635463146972045
Merged-chr7-89335452-4	chr7	89335450	89335650	+	801.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360746, intron 2 of 14)	intron (NM_001360746, intron 2 of 14)	3237.0	NM_028343	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53183928-2	chr4	53183828	53184028	+	633.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24033.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-37778303-4	chr13	37778186	37778386	+	955.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-47752.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	1.50787651406428	2.26481098222	2.66257863187793	2.48658644657268	2.78523781234466	2.42755383778015	3.09059240977488	1.33489828091567	0.552858169757276	0.551738609467433	0.959312344950351
Merged-chr11-117824732-4	chr11	117824641	117824841	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009387, exon 3 of 7)	exon (NM_009387, exon 3 of 7)	-1178.0	NM_027827	71562.0	Mm.273958	NM_027827	ENSMUSG00000017718	Afmid	9030621K19Rik|Ammd|FKF|KFA|Kf|formylase	arylformamidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-9745786-2	chr1	9745686	9745886	+	668.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_173443, exon 1 of 3)	exon (NM_173443, exon 1 of 3)	-1862.0	NR_040462	73331.0	Mm.460470	NR_040462		1700034P13Rik	-	RIKEN cDNA 1700034P13 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-117550282-4	chr4	117550183	117550383	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080469)	promoter-TSS (NM_080469)	-41.0	NM_001356404	140546.0	Mm.235891	NM_080469	ENSMUSG00000033423	Eri3	PINT1|Prnpip1	exoribonuclease 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129618992-1	chr2	129618892	129619092	+	637.0	f1_c57bl6.idr	intron (NM_001355158, intron 6 of 8)	intron (NM_001355158, intron 6 of 8)	23530.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	2.37105404187208	2.32594406138561	2.51087236318707	1.67474742956554	1.02531241722309	1.11623420539081	1.08804555098375	2.27869923702472	-1.94934394116603	0.0955897961633735	0.479601215933157
Merged-chr4-135942896-2	chr4	135942796	135942996	+	823.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	T-rich|Low_complexity|Low_complexity	-3552.0	NM_008254	15356.0	Mm.482102	NM_008254	ENSMUSG00000028672	Hmgcl	AW476067|HL	3-hydroxy-3-methylglutaryl-Coenzyme A lyase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171159798-2	chr1	171159698	171159898	+	818.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_008623, exon 7 of 8)	exon (NM_008623, exon 7 of 8)	4280.0	NM_001315500	17528.0	Mm.9986	NM_008623	ENSMUSG00000056569	Mpz	Mpp|P-zero|P0	myelin protein zero	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-56924762-4	chr9	56924672	56924872	+	942.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175483, intron 1 of 1)	intron (NM_175483, intron 1 of 1)	3599.0	NM_175483	235406.0	Mm.191459	NM_175483	ENSMUSG00000032733	Snx33	E130307J07Rik|Sh3px3	sorting nexin 33	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-170934148-2	chr1	170934048	170934248	+	569.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6565.0	NM_001160215	98752.0	Mm.1850	NM_145141	ENSMUSG00000038421	Fcrla	BB219290|FCRL|FCRL1|FREB|Fcrlm1|Fcrx|Freb1|mFREB|mFcrX	Fc receptor-like A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-24831099-2	chr12	24830907	24831107	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001083341)	promoter-TSS (NM_001083341)	-592.0	NM_026037	67216.0	Mm.167671	NM_026037	ENSMUSG00000020646	Mboat2	2810049G06Rik|AU022889|AW547221|LPCAT4|Moact2|Oact2	membrane bound O-acyltransferase domain containing 2	protein-coding	-0.691004228274267	-0.677459441291142	-0.481014626565841	-0.685284772283162	-0.690150066990583	-0.676470674941957	0.263994404455853	-0.68468594228947	2.66047897631863	0.337444858956106	1
Merged-chr11-70585369-2	chr11	70585269	70585469	+	915.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016713, intron 1 of 30)	intron (NM_016713, intron 1 of 30)	22488.0	NM_016713	50932.0	Mm.42967	NM_016713	ENSMUSG00000020827	Mink1	B55|MINK|Map4k6|Ysk2	misshapen-like kinase 1 (zebrafish)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-86836878-4	chr12	86836770	86836970	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47944.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-59666604-3	chr13	59666511	59666711	+	711.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001035122, intron 1 of 9)	intron (NM_001035122, intron 1 of 9)	9173.0	NM_001035122	105348.0	Mm.171335	NM_027307	ENSMUSG00000021556	Golm1	2310001L02Rik|AW125446|D030064E01Rik|GP73|Golph2|PSEC0257	golgi membrane protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-87986384-2	chr17	87986284	87986484	+	603.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_010830, exon 4 of 10)	exon (NM_010830, exon 4 of 10)	11334.0	NM_010830	17688.0	Mm.18210	NM_010830	ENSMUSG00000005370	Msh6	AU044881|AW550279|GTBP|Gtmbp	mutS homolog 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-141768578-1	chr2	141768478	141768678	+	582.0	f1_c57bl6.idr	intron (NM_001013802, intron 7 of 18)	Lx3_Mus|LINE|L1	-1097102.0	NM_178382	71436.0	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-106060022-2	chr8	106059929	106060129	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_010901, intron 1 of 9)	CpG	426.0	NM_010901	18021.0	Mm.383185	NM_010901	ENSMUSG00000031902	Nfatc3	C80703|D8Ertd281e|NFAT4|NFATx	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-71624009-1	chr4	71623909	71624109	+	577.0	f1_c57bl6.idr	Intergenic	L1Md_T|LINE|L1	576884.0	NM_011599	21885.0	Mm.278444	NM_011599	ENSMUSG00000008305	Tle1	C230057C06Rik|Estm14|Grg-1|Grg1|Tle4l	transducin-like enhancer of split 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76206438-2	chr15	76206338	76206538	+	791.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163540)	promoter-TSS (NM_001163540)	-117.0	NM_001163540	18810.0	Mm.234912	NM_011117	ENSMUSG00000022565	Plec	AA591047|AU042537|EBS1|PCN|PLTN|Plec1	plectin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-100057974-2	chr15	100057874	100058074	+	790.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159361, intron 1 of 37)	intron (NM_001159361, intron 1 of 37)	19310.0	NM_001159361	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-45627008-4	chr17	45626914	45627114	+	961.775024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24912.0	NM_001177469	653016.0	Mm.45676	NM_001177468	ENSMUSG00000079471	Mymx	EG653016|Esgp|Gm7325|minion|myomerger	myomixer, myoblast fusion factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152528943-4	chr1	152528856	152529056	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 14 of 17)	L1MEd|LINE|L1	96261.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-90257556-4	chr9	90257439	90257639	+	947.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 1 of 12)	intron (NM_194334, intron 1 of 12)	13230.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-48689283-4	chr2	48689183	48689383	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-124826.0	NM_007396	11480.0	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-78428369-4	chr9	78428265	78428465	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14872.0	NR_125721	214763.0	Mm.101559	NM_173386	ENSMUSG00000032344	Mb21d1	E330016A19Rik|cGAS	Mab-21 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-73529397-4	chr2	73529309	73529509	+	987.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153138)	promoter-TSS (NM_153138)	78.0	NM_153138	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-54991289-4	chr18	54991172	54991372	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360787, intron 1 of 8)	intron (NM_001360787, intron 1 of 8)	-1092.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91076475-3	chr16	91076390	91076590	+	715.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7345.0	NM_028905	74387.0	Mm.236220	NM_028905	ENSMUSG00000039851	4932438H23Rik	4931406G06Rik|AI550392	RIKEN cDNA 4932438H23 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-149290361-4	chr3	149290260	149290460	+	925.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15623.0	NR_040591	381482.0	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA	1.75701858724505	2.30308291354147	2.22418475140424	1.71664494528674	1.77075190354952	1.66631372701585	1.43148435729097	1.85608020088953	-0.994360895326653	0.315045234137045	0.817573046685567
Merged-chr9-118706351-4	chr9	118706245	118706445	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 15 of 27)	intron (NM_133721, intron 15 of 27)	-5347.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	2.5579869042905	3.09403525600188	3.40738150687085	2.90948321261778	3.03784227181718	2.75801444514538	2.66701017970468	3.33271232958728	-0.0782157681367814	0.904491729046245	0.998431161219273
Merged-chr2-177759255-3	chr2	177759151	177759351	+	645.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001243903)	promoter-TSS (NM_001243903)	-37.0	NM_001243903	626802.0	Mm.386029	NM_001243903	ENSMUSG00000078864	Gm14322	-	predicted gene 14322	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-49997430-3	chr11	49997330	49997530	+	960.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-27901.0	NM_021540	59044.0	Mm.359004	NM_021540	ENSMUSG00000020376	Rnf130	2510042A13Rik|G1RZFP|G1rp|GOLIATH|GP	ring finger protein 130	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-67788950-2	chr7	67788850	67789050	+	729.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045954, intron 1 of 2)	intron (NR_045954, intron 1 of 2)	14546.0	NR_045954	73904.0	Mm.70992	NR_045954	ENSMUSG00000097697	4833412C05Rik	Bigheart	RIKEN cDNA 4833412C05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-23431541-4	chr13	23431461	23431661	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015492)	promoter-TSS (NR_015492)	-544.0	NR_015492	320842.0	Mm.487476	NR_015492	ENSMUSG00000085024	C230035I16Rik	-	RIKEN cDNA C230035I16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-140856383-4	chr7	140856302	140856502	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018742)	promoter-TSS (NM_018742)	-19.0	NM_018742	54399.0	Mm.155696	NM_018742	ENSMUSG00000025484	Bet1l	2610021K23Rik|Gs15	Bet1 golgi vesicular membrane trafficking protein like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-106577379-4	chr8	106577283	106577483	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9760.0	NR_045470	68692.0	Mm.416843	NR_045470	ENSMUSG00000099139	1110028F18Rik	-	RIKEN cDNA 1110028F18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-4486306-2	chr5	4486206	4486406	+	617.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	271910.0	NM_021457	14362.0	Mm.246003	NM_021457	ENSMUSG00000044674	Fzd1	AW227548|FZ-1|Fz1	frizzled class receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-23555609-2	chr13	23555509	23555709	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_145713, exon 1 of 1)	exon (NM_145713, exon 1 of 1)	577.0	NM_145713	14957.0	Mm.247046	NM_145713	ENSMUSG00000052565	Hist1h1d	H1.3|H1D|H1f3|H1s-4	histone cluster 1, H1d	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44418091-4	chr9	44418003	44418203	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_201372)	promoter-TSS (NM_201372)	-34.0	NM_201372	382073.0	Mm.259573	NM_201372	ENSMUSG00000043923	Ccdc84	D630044F24Rik|Gm1114	coiled-coil domain containing 84	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129742417-4	chr4	129742332	129742532	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045036)	promoter-TSS (NR_045036)	-129.0	NR_045036	20218.0	Mm.8256	NM_011317	ENSMUSG00000028790	Khdrbs1	Sam68|p62|p68	KH domain containing, RNA binding, signal transduction associated 1	protein-coding	4.48454873814872	5.15014090291629	5.35869725596534	4.47943471472738	5.11870752998968	4.3695508664766	5.7685768043539	4.68966910739304	0.209212620397959	0.591466467469393	0.969914559899697
Merged-chr6-116128945-2	chr6	116128845	116129045	+	678.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177412, intron 3 of 5)	intron (NM_177412, intron 3 of 5)	64429.0	NM_177412	330401.0	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-98271225-5	chr12	98271127	98271327	+	978.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008152, intron 1 of 1)	Lx2B2|LINE|L1	2592.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165926518-3	chr2	165926382	165926582	+	816.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-41644.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	0.345525410719228	0.0647116453649733	0.0572716604537655	0.0514804716461068	1.1238596546864	0.623473309297509	0.0589189096379946	0.0524954766803573	2.78977310979937	0.196370809989015	1
Merged-chr11-117939889-4	chr11	117939779	117939979	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29487.0	NM_007707	12702.0	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-75795110-4	chr10	75795014	75795214	+	590.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008185, intron 2 of 4)	RLTR28|LTR|ERVL	2617.0	NM_001358778	14871.0	Mm.2746	NM_008185	ENSMUSG00000001663	Gstt1	AI255817|Gstt1-1	glutathione S-transferase, theta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120335625-3	chr8	120335516	120335716	+	563.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-107386.0	NR_110496	434353.0	Mm.411793	NR_110496	ENSMUSG00000097960	A330074K22Rik	-	RIKEN cDNA A330074K22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-90235417-4	chr11	90235319	90235519	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14057.0	NM_026178	67468.0	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-58323399-4	chr10	58323300	58323500	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359115)	promoter-TSS (NM_001359115)	-147.0	NM_001359115	110829.0	Mm.57734	NM_026148	ENSMUSG00000019920	Lims1	2310016J22Rik|4921524A02Rik|AI507642|AU021743|AW551584|C430041B13Rik|Lims1l|PINCH|PINCH1	LIM and senescent cell antigen-like domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-108783045-4	chr6	108782930	108783130	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026011)	promoter-TSS (NM_026011)	-29.0	NM_026011	67166.0	Mm.271178	NM_026011	ENSMUSG00000030105	Arl8b	2610313E07Rik|3100002J04Rik|Arl10c|gie1	ADP-ribosylation factor-like 8B	protein-coding	6.21523128855117	6.13084260798417	6.40209348969497	5.86796871839003	6.33291069418303	6.05471063858965	6.64392742954921	5.99297892895025	0.125054318049832	0.590362732318813	0.969416194987468
Merged-chr7-19873333-2	chr7	19873233	19873433	+	867.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1I|LTR|ERVL-MaLR	-12034.0	NM_001033419	330483.0	Mm.260192	NM_001033419	ENSMUSG00000014686	Ceacam16	Gm769	carcinoembryonic antigen-related cell adhesion molecule 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-5014356-4	chr7	5014289	5014489	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011813)	promoter-TSS (NM_011813)	-136.0	NM_001360242	23877.0	Mm.38911	NM_011813	ENSMUSG00000061374	Fiz1	AI790204|mFLJ00416	Flt3 interacting zinc finger protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-20183293-2	chr13	20183193	20183393	+	874.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 1 of 21)	L2a|LINE|L2	92786.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-105965399-4	chr1	105965304	105965504	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24878.0	NR_151625	635504.0	Mm.359717	NR_151625		Gm7160	EG635504	predicted gene 7160	ncRNA	7.61180210990992	7.93876275706929	7.48514710934549	7.57744606053642	7.43307282311951	8.12400963806281	7.59397920072905	7.73605852434587	0.0816557324213883	0.626194423076904	0.980912176761026
Merged-chr10-128259108-4	chr10	128259013	128259213	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	4982.0	NM_133996	28194.0	Mm.439846	NM_133996	ENSMUSG00000051716	Apon	AI195275|D10Ucla2	apolipoprotein N	protein-coding	3.14906735910365	2.90757482219125	3.33910930421414	3.24717008218497	2.07919927130248	2.14343578332644	3.49961865863152	2.00302888315992	-0.996785598339559	0.180454695404713	0.652661405385576
Merged-chr6-30468794-4	chr6	30468710	30468910	+	660.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7825.0	NR_131049	69337.0	Mm.396168	NR_131049	ENSMUSG00000085470	1700012C14Rik	-	RIKEN cDNA 1700012C14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-63625879-1	chr15	63625779	63625979	+	561.0	f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	-146271.0	NR_045279	432958.0	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4003415-2	chr19	4003315	4003515	+	679.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021791)	promoter-TSS (NM_021791)	30.0	NM_021791	60425.0	Mm.266972	NM_021791	ENSMUSG00000024871	Doc2g	D830013O18Rik	double C2, gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-143225093-4	chr6	143224994	143225194	+	984.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20794.0	NR_027803	52285.0	Mm.354898	NM_001033129		D6Ertd474e	1700001I24Rik|AU023129	DNA segment, Chr 6, ERATO Doi 474, expressed	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-110483384-3	chr11	110483298	110483498	+	840.0833130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356352, intron 2 of 11)	intron (NM_001356352, intron 2 of 11)	4058.0	NM_001356346	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	0.278958757264987	0.660817544255553	0.29331159926359	0.721931863478435	0.280294102801566	0.301850919355282	0.985786551729041	0.838071608137742	0.843519846802964	0.658850431153952	1
Merged-chr2-49417187-4	chr2	49417098	49417298	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34288.0	NM_172663	227867.0	Mm.29167	NM_172663	ENSMUSG00000069495	Epc2	5830499L14|D2Ertd694e	enhancer of polycomb homolog 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-121599484-3	chr10	121599350	121599550	+	767.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359618, intron 22 of 24)	intron (NM_001359618, intron 22 of 24)	-12656.0	NM_019786	56480.0	Mm.34580	NM_019786	ENSMUSG00000020115	Tbk1	1200008B05Rik|AI462036|AW048562	TANK-binding kinase 1	protein-coding	0.988601423337177	2.67216269025954	2.00861449684195	0.791643657067276	2.0147708295376	0.843041253719882	0.81776776598495	1.26400248212638	-1.35505441648147	0.313206162823348	0.815012282416452
Merged-chr5-114709772-2	chr5	114709672	114709872	+	914.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029992, intron 3 of 12)	MTEa|LTR|ERVL-MaLR	1993.0	NM_029992	77832.0	Mm.239698	NM_029992	ENSMUSG00000002486	Tchp	A930031F18Rik|AV279199	trichoplein, keratin filament binding	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-122860210-4	chr4	122860121	122860321	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007598, intron 12 of 12)	intron (NM_007598, intron 12 of 12)	23994.0	NM_008917	19063.0	Mm.277719	NM_008917	ENSMUSG00000028657	Ppt1	9530043G02Rik|AA960502|C77813|CLN1|D4Ertd184e|INCL|PPT	palmitoyl-protein thioesterase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84642754-1	chr8	84642654	84642854	+	704.0	f1_balb.idr	Intergenic	Intergenic	20098.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	-0.0679748899170017	-0.190407479326495	-0.194644553026033	-0.041995974062144	0.419817506518723	-0.189450164122173	-0.193711413329668	0.212742412757077	2.04753498098581	0.371379875088269	1
Merged-chr11-100861679-2	chr11	100861579	100861779	+	697.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011488, intron 3 of 19)	intron (NM_011488, intron 3 of 19)	1195.0	NM_001164062	20850.0	Mm.277403	NM_011488	ENSMUSG00000004043	Stat5a	AA959963|STAT5	signal transducer and activator of transcription 5A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71297004-4	chr8	71296910	71297110	+	961.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142322, intron 2 of 39)	intron (NM_001142322, intron 2 of 39)	24296.0	NM_001142323	17925.0	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-128032859-2	chr7	128032759	128032959	+	731.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR49|LTR|ERVK	28481.0	NM_001079932	434246.0	Mm.389924	NM_001079932	ENSMUSG00000042828	Trim72	BC067209|MG53	tripartite motif-containing 72	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-54821038-4	chr11	54820967	54821167	+	916.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040284, intron 1 of 2)	intron (NR_040284, intron 1 of 2)	1148.0	NR_040284	432562.0	Mm.406948	NR_040284	ENSMUSG00000086789	Lyrm7os	Gm12228	LYR motif containing 7, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70610865-4	chr8	70610777	70610977	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2563.0	NM_133772	76900.0	Mm.6667	NM_133772	ENSMUSG00000070003	Ssbp4	1210002E11Rik|AW743380|Sspb4	single stranded DNA binding protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-117128133-3	chr4	117128007	117128207	+	715.555542	f1_balb.idr|f1_c57bl6.idr	TTS (NM_013807)	TTS (NM_013807)	1294.0	NM_175030	242646.0	Mm.358914	NM_175030	ENSMUSG00000047671	Tctex1d4	4833401D15Rik	Tctex1 domain containing 4	protein-coding	1.33488005704259	0.757991270178934	0.740330640208427	0.726332056215902	1.73767781566371	1.68323666600748	0.744271216943831	2.07662071304256	2.75906947428717	0.0656114123698267	0.383379411824601
Merged-chr15-5953414-2	chr15	5953314	5953514	+	577.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER20B|LTR|ERVK	91290.0	NR_155428	105245876.0	Mm.128197	NR_155428		Gm41259	-	predicted gene, 41259	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-17743857-4	chr14	17743746	17743946	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113417, intron 1 of 9)	intron (NM_001113417, intron 1 of 9)	82886.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-103426160-2	chr3	103426060	103426260	+	687.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	146867.0	NM_053170	94093.0	Mm.195036	NM_053170	ENSMUSG00000033014	Trim33	8030451N04Rik|AI413936|Ecto|Tif1g	tripartite motif-containing 33	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-55570523-2	chr13	55570422	55570622	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_145382, exon 1 of 11)	5' UTR (NM_145382, exon 1 of 11)	598.0	NM_145382	212483.0	Mm.35661	NM_145382	ENSMUSG00000021495	Fam193b	IRIZIO|Kiaa1931	family with sequence similarity 193, member B	protein-coding	-2.18308165884198	-2.15547475440471	-2.16382331017202	-2.1706810624505	-2.18114370519566	-2.15366558754311	-2.03057248461154	-2.16945352807143	0.759018020146679	0.829933115115583	1
Merged-chr4-33240577-2	chr4	33240477	33240677	+	794.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	8210.0	NM_001033225	108767.0	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-76110134-2	chr14	76110034	76110234	+	733.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013745)	promoter-TSS (NM_013745)	681.0	NM_026177	67467.0	Mm.260767	NM_026177	ENSMUSG00000022008	Gpalpp1	1200011I18Rik|Kiaa1704	GPALPP motifs containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-103923297-1	chr8	103923197	103923397	+	571.0	f0_balb.idr	Intergenic	Intergenic	-178328.0	NM_009868	12562.0	Mm.21767	NM_009868	ENSMUSG00000031871	Cdh5	7B4|AA408225|Cd144|VE-Cad|VECD|VEcad|Vec	cadherin 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-85924608-3	chr5	85924537	85924737	+	829.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	140946.0	NM_001345902	12617.0	Mm.4649	NM_007683	ENSMUSG00000029253	Cenpc1	CENP-C|Cenpc	centromere protein C1	protein-coding	-1.17367364971587	-1.14665061133654	-1.15856004380685	-1.16834280623128	-1.17310571790619	-1.14406978763884	-0.42938571406771	-1.16659169643457	2.89727187181404	0.396361616615464	1
Merged-chr4-46390327-2	chr4	46390227	46390427	+	667.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029086)	promoter-TSS (NM_029086)	-890.0	NM_001347095	74753.0	Mm.45973	NM_029086	ENSMUSG00000028331	Trmo	5830415F09Rik|AV014846|Nap1	tRNA methyltransferase O	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-9429658-2	chr13	9429558	9429758	+	664.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081426, intron 1 of 36)	intron (NM_001081426, intron 1 of 36)	153133.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-162665705-4	chr1	162665597	162665797	+	952.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7478.0	NM_001177581	100038657.0	Mm.416999	NM_001177581	ENSMUSG00000091060	Myocos	7420461P10Rik	myocilin opposite strand	protein-coding	3.25427932657357	3.08522045476183	3.44511002336995	3.35106322913112	2.52964323597856	3.66228863528143	3.61671240262346	2.66392308103219	-0.123086673136141	0.842357689004744	0.998431161219273
Merged-chr12-113026846-3	chr12	113026749	113026949	+	833.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081170, intron 1 of 23)	intron (NM_001081170, intron 1 of 23)	12341.0	NM_001291444	217893.0	Mm.35754	NM_198165	ENSMUSG00000021143	Pacs2	6720425G15Rik|AW208651|AW489976|E230011J22|Pacs1l|mKIAA0602	phosphofurin acidic cluster sorting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118293720-2	chr11	118293620	118293820	+	658.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3476.0	NM_001033528	72344.0	Mm.232293	NM_001033528	ENSMUSG00000033909	Usp36	2700002L06Rik|mKIAA1453	ubiquitin specific peptidase 36	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-83751494-1	chr8	83751394	83751594	+	603.5	f1_c57bl6.idr	Intergenic	Intergenic	-10183.0	NM_001163031	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	1.18829606300806	2.34942124636421	1.10007341211914	1.4096555465722	1.6820795983912	0.888300743135812	0.86914371114024	1.67399798562077	-0.872607132436803	0.497690560281208	0.936897994490085
Merged-chr7-4381842-2	chr7	4381742	4381942	+	797.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163014, intron 4 of 7)	intron (NM_001163014, intron 4 of 7)	15902.0	NM_001163014	243816.0	Mm.248662	NM_001163014	ENSMUSG00000078810	Gp6	9830166G18Rik|Gm469|Gpvi	glycoprotein 6 (platelet)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-68879811-4	chr2	68879702	68879902	+	932.537476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347161, intron 1 of 10)	(TG)n|Simple_repeat|Simple_repeat	18361.0	NM_001347161	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-35562635-4	chr18	35562521	35562721	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010771, intron 1 of 14)	CpG	463.0	NM_010771	17184.0	Mm.215034	NM_010771	ENSMUSG00000037236	Matr3	1110061A14Rik|2810017I02Rik|AI841759|AW555618|D030046F20Rik|mKIAA0723	matrin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-114525820-2	chr7	114525720	114525920	+	654.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011055, intron 11 of 15)	intron (NM_011055, intron 11 of 15)	37152.0	NR_110407	244209.0	Mm.108037	NM_177382	ENSMUSG00000030670	Cyp2r1	-	cytochrome P450, family 2, subfamily r, polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-103797428-7	chr2	103797345	103797545	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001111290)	promoter-TSS (NM_001111290)	195.0	NM_001111291	53872.0	Mm.427589	NM_016739	ENSMUSG00000027184	Caprin1	AL022980|Caprin-1|Gpiap|Gpiap1|Mmgpip137|P137|rng105	cell cycle associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-77908277-2	chr14	77908177	77908377	+	626.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029495, intron 1 of 11)	MTD-int|LTR|ERVL-MaLR	4038.0	NM_029495	108670.0	Mm.68134	NM_029495	ENSMUSG00000022014	Epsti1	2310046K10Rik|5033415K03Rik|BRESI1	epithelial stromal interaction 1 (breast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-40866594-3	chr13	40866496	40866696	+	895.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023887, intron 1 of 2)	RMER16_Mm|LTR|ERVK	6828.0	NM_023887	14538.0	Mm.314757	NM_008105	ENSMUSG00000021360	Gcnt2	5330430K10Rik|IGnT|IGnTA|IGnTB|IGnTC	glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-25362846-3	chr8	25362772	25362972	+	890.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56602.0	NR_040352	74489.0	Mm.256468	NR_040352	ENSMUSG00000110140	5430421F17Rik	-	RIKEN cDNA 5430421F17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-111491479-2	chr13	111491379	111491579	+	753.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1352.0	NM_001361924	73274.0	Mm.57286	NM_028487	ENSMUSG00000032745	Gpbp1	1700034P14Rik|AU019836|D230035M11Rik|Gpbp|mGPBP	GC-rich promoter binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-52244571-4	chr14	52244461	52244661	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6989.0	NM_201637	67772.0	Mm.289934	NM_201637	ENSMUSG00000053754	Chd8	5830451P18Rik|AU015341|Duplin|HELSNF1|mKIAA1564	chromodomain helicase DNA binding protein 8	protein-coding	2.23935318276987	2.87956416344661	1.27460397214141	3.14683967626683	1.44327930228615	3.08311186038264	3.12965512644815	1.24432988071165	-0.0856278082790805	0.933736867111288	0.998431161219273
Merged-chr8-116267260-2	chr8	116267160	116267360	+	667.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1H1|LTR|ERVL-MaLR	-237755.0	NM_029297	75465.0	Mm.23114	NM_029297	ENSMUSG00000034467	Dynlrb2	1700009A04Rik|DNLC2B|Dncl2b	dynein light chain roadblock-type 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101373662-1	chr15	101373562	101373762	+	875.0	f0_balb.idr	Intergenic	Intergenic	-3537.0	NM_028770	74127.0	Mm.440055	NM_028770	ENSMUSG00000037185	Krt80	1200016G03Rik|2310041I20Rik|Kb20	keratin 80	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-52006025-3	chr7	52005878	52006078	+	869.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001160345)	promoter-TSS (NM_001160345)	40.0	NM_001160345	75744.0	Mm.386823	NM_001160345	ENSMUSG00000074093	Svip	1700006C13Rik|6620401M08Rik	small VCP/p97-interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-85151556-3	chr15	85151457	85151657	+	575.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040360, intron 2 of 2)	intron (NR_040360, intron 2 of 2)	4575.0	NR_040360	100502602.0	Mm.390830	NR_040360	ENSMUSG00000115924	Gm19277	-	predicted gene, 19277	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-101898259-2	chr5	101898159	101898359	+	799.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 34 of 66)	intron (NM_172882, intron 34 of 66)	133129.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-8869093-4	chr10	8869021	8869221	+	831.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 1 of 19)	intron (NM_175155, intron 1 of 19)	16949.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	2.20512911864041	3.17220265947669	2.73257295607182	1.86188954372268	2.62627169916938	1.48313780682224	2.75417309810447	2.76023901002694	-0.170981548859115	0.843069360453093	0.998431161219273
Merged-chr18-14682289-4	chr18	14682232	14682432	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009280, intron 1 of 10)	CpG	582.0	NM_001161369	268996.0	Mm.31761	NM_009280	ENSMUSG00000037013	Ss18	D130059H17|Ssxt|Syt	SS18, nBAF chromatin remodeling complex subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-106140419-1	chr8	106140319	106140519	+	548.0	f1_c57bl6.idr	Intergenic	Intergenic	-3445.0	NM_176838	77411.0	Mm.183003	NM_176838	ENSMUSG00000084128	Esrp2	9530027K23Rik|Rbm35b	epithelial splicing regulatory protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-137810344-4	chr3	137810230	137810430	+	993.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-26715.0	NR_105801	102466638.0		NR_105801	ENSMUSG00000099011	Mir6380	Gm27356|mmu-mir-6380	microRNA 6380	ncRNA	1.56599180887142	2.66598632702523	2.4242846696724	0.705051479919152	0.672212960767877	1.31204229448596	0.733228001678721	0.708969452562361	-3.98851217547995	0.00761560136328728	0.089815188555099
Merged-chr7-5064305-4	chr7	5064242	5064442	+	838.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205231, intron 1 of 11)	intron (NM_001205231, intron 1 of 11)	2199.0	NM_001205231	22185.0	Mm.360389	NM_133671	ENSMUSG00000030435	U2af2	65kDa	U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-121836433-4	chr5	121836338	121836538	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001306126)	promoter-TSS (NM_001306126)	-334.0	NM_001306126	16923.0	Mm.65493	NM_008507	ENSMUSG00000042594	Sh2b3	AI429800|Lnk	SH2B adaptor protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-79988653-2	chr10	79988553	79988753	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007725)	promoter-TSS (NM_007725)	53.0	NM_007725	12798.0	Mm.157770	NM_007725	ENSMUSG00000004665	Cnn2	AA408047|AI324678|Calpo2	calponin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-195040632-4	chr1	195040538	195040738	+	921.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_132621)	TTS (NR_132621)	3091.0	NR_029745	387224.0		NR_029745	ENSMUSG00000065548	Mir29c	Mirn29c|mir-29c|mmu-mir-29c	microRNA 29c	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107637236-1	chr9	107637136	107637336	+	717.0	f1_balb.idr	Intergenic	Intergenic	-1894.0	NM_008138	14678.0	Mm.196464	NM_008138	ENSMUSG00000032562	Gnai2	C76432|Galphai2|Gia|Gnai-2	guanine nucleotide binding protein (G protein), alpha inhibiting 2	protein-coding	1.56576633613385	1.36233925143286	0.94042152227562	1.42455241005548	1.75580966001984	0.958970001330052	1.47750660531137	1.8536129838783	0.775683686220229	0.538371746881125	0.95416690220209
Merged-chr2-131264172-2	chr2	131264072	131264272	+	929.8000490000001	f1_balb.idr|f1_c57bl6.idr	intron (NR_149748, intron 1 of 8)	intron (NR_149748, intron 1 of 8)	1333.0	NR_149748	74450.0	Mm.101264	NM_153501	ENSMUSG00000037514	Pank2	4933409I19Rik|AI642621	pantothenate kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-37677463-2	chr13	37677363	37677563	+	824.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-148575.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-87987065-4	chr3	87986968	87987168	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_007529)	TTS (NM_007529)	13288.0	NM_007529	12032.0	Mm.4598	NM_007529	ENSMUSG00000004892	Bcan	Cspg7	brevican	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-104354749-2	chr8	104354649	104354849	+	835.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_153582, exon 4 of 4)	3' UTR (NM_153582, exon 4 of 4)	14155.0	NM_024217	68119.0	Mm.390108	NM_024217	ENSMUSG00000031875	Cmtm3	9430096L06Rik|AI413895|BNAS2|Cklfsf3	CKLF-like MARVEL transmembrane domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166995449-4	chr2	166995359	166995559	+	820.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109905, intron 1 of 11)	intron (NM_001109905, intron 1 of 11)	840.0	NM_011490	20853.0	Mm.73276	NM_011490	ENSMUSG00000039536	Stau1	5830401L18Rik|AW549911|C85792|Stau	staufen double-stranded RNA binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-143817716-4	chr5	143817618	143817818	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-54144.0	NM_013557	15467.0	Mm.389709	NM_013557	ENSMUSG00000029613	Eif2ak1	HCR|Hri	eukaryotic translation initiation factor 2 alpha kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-87808774-2	chr6	87808674	87808874	+	588.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_104478, intron 1 of 2)	MIRc|SINE|MIR	983.0	NM_133717	69834.0	Mm.37380	NM_133717	ENSMUSG00000030055	Rab43	1810048P08Rik|2500004H21Rik|AW490415	RAB43, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-110679995-4	chr7	110679905	110680105	+	832.270813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	52348.0	NM_009627	11535.0	Mm.1408	NM_009627	ENSMUSG00000030790	Adm	AM	adrenomedullin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46469729-2	chr8	46469629	46469829	+	598.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1308.0	NM_007981	14081.0	Mm.210323	NM_007981	ENSMUSG00000018796	Acsl1	Acas|Acas1|Acs|FACS|Facl2|LACS 1|LACS1	acyl-CoA synthetase long-chain family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-12881752-3	chr7	12881587	12881787	+	935.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153802, intron 1 of 3)	intron (NM_153802, intron 1 of 3)	509.0	NM_153802	243833.0	Mm.293823	NM_153802	ENSMUSG00000060397	Zfp128	9630016P15Rik|Znf8|mZnf8	zinc finger protein 128	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141953046-4	chr4	141952946	141953146	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177868, intron 12 of 31)	MER2|DNA|TcMar-Tigger	-29946.0	NR_040672	545691.0	Mm.332015	NR_040672	ENSMUSG00000085424	Fhad1os1	Gm13037	forkhead-associated (FHA) phosphopeptide binding domain 1, opposite strand 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-69538701-4	chr12	69538604	69538804	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44324.0	NM_001033236	207965.0	Mm.102487	NM_001033236	ENSMUSG00000049882	Vcpkmt	Gm71|Mettl21d|Mettl221d|VCP-KMT	valosin containing protein lysine (K) methyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-101330709-1	chr14	101330609	101330809	+	561.0	f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-130640.0	NM_029680	76627.0	Mm.31415	NM_029680	ENSMUSG00000042888	Prr30	1700110M21Rik	proline rich 30	protein-coding	-0.971312285390935	-1.32150654078059	-1.33147993744313	-1.33967238241123	-1.35121754901196	-1.3193452641188	-1.17229511841967	-1.33820593867886	-0.987986103315274	0.773449200295012	1
Merged-chr17-35025176-4	chr17	35024989	35025189	+	862.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_023893)	TTS (NM_023893)	2927.0	NR_028258	78376.0	Mm.390966	NM_023893	ENSMUSG00000036185	Sapcd1	2810436B06Rik|G7d|Ng23	suppressor APC domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-50154398-4	chr11	50154287	50154487	+	890.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029745, intron 10 of 20)	L1MB3|LINE|L1	-20464.0	NM_026543	68067.0	Mm.40828	NM_026543	ENSMUSG00000020381	Mrnip	2900016G09Rik|3010026O09Rik|AI851514|AW475975	MRN complex interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-73464482-2	chr2	73464382	73464582	+	709.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153138, intron 1 of 7)	B4|SINE|B4	-10593.0	NM_001289722	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-50834182-4	chr14	50834094	50834294	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009351, intron 41 of 54)	intron (NM_009351, intron 41 of 54)	26278.0	NM_009632	11546.0	Mm.281482	NM_009632	ENSMUSG00000036023	Parp2	ADPRT-2|ARTD2|Adprt2|Adprtl2|Aspartl2|C78626|PARP-2|mPARP-2|pADPRT-2	poly (ADP-ribose) polymerase family, member 2	protein-coding	7.22384498062226	7.70300305171163	7.54988824466463	7.29905454003604	6.80027454901819	7.10960223982734	7.27799545147331	6.91332669654201	-0.439755581691188	0.0116517393582859	0.121211764873452
Merged-chr2-109287038-2	chr2	109286938	109287138	+	975.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_139303, intron 1 of 16)	Lx9|LINE|L1	6300.0	NM_139303	228421.0	Mm.274086	NM_139303	ENSMUSG00000027115	Kif18a	AU024633|B130001M12Rik|gcd2	kinesin family member 18A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-130829451-3	chr4	130829375	130829575	+	935.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36938.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-13075024-2	chr8	13074924	13075124	+	617.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001357220, exon 8 of 8)	3' UTR (NM_001357220, exon 8 of 8)	14116.0	NM_001357220	66901.0	Mm.441140	NM_025834	ENSMUSG00000031445	Proz	1300015B06Rik	protein Z, vitamin K-dependent plasma glycoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-43270310-2	chr17	43270210	43270410	+	637.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133776)	promoter-TSS (NM_133776)	-37.0	NM_133776	77596.0	Mm.159950	NM_133776	ENSMUSG00000041293	Adgrf1	5031409J19Rik|Gpr110|KPG_009	adhesion G protein-coupled receptor F1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-156660463-1	chr1	156660363	156660563	+	618.0	f1_c57bl6.idr	intron (NM_023141, intron 4 of 5)	intron (NM_023141, intron 4 of 5)	13876.0	NM_023141	30935.0	Mm.206737	NM_023141	ENSMUSG00000060519	Tor3a	Adir	torsin family 3, member A	protein-coding	2.80025679846974	2.25008764410898	2.4301024510588	3.01292538868245	1.71860161066898	1.41707698124321	2.44943338349672	2.25517424521705	-1.42208773867969	0.105160700865061	0.505892575341078
Merged-chr5-108030367-1	chr5	108030267	108030467	+	689.0	f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-35307.0	NM_001359088	17765.0	Mm.257149	NM_013827	ENSMUSG00000029267	Mtf2	9230112N11Rik|AA537621|C76717|M96|Pcl2	metal response element binding transcription factor 2	protein-coding	0.406453747637187	1.16077938804572	1.41638016057757	0.421457329432621	0.408709815564604	1.29665248317049	0.432829399071559	0.626573913836804	-0.799840482763233	0.650086316825826	0.985422869512088
Merged-chr16-33912960-2	chr16	33912860	33913060	+	953.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 9 of 14)	intron (NM_001145884, intron 9 of 14)	54078.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-52799614-4	chr1	52799595	52799795	+	996.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008384, intron 1 of 5)	intron (NM_008384, intron 1 of 5)	17993.0	NM_008384	16329.0	Mm.917	NM_008384	ENSMUSG00000026102	Inpp1	2300002C06Rik|AV137389	inositol polyphosphate-1-phosphatase	protein-coding	3.27693436451156	3.15191557002617	3.53956292063312	2.85767479237985	2.62278016042547	3.53480454790069	2.71555458548893	3.07311382559484	-0.338132372047424	0.589222136089356	0.968865306825047
Merged-chr7-80457465-4	chr7	80457351	80457551	+	972.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042527, intron 21 of 21)	MIR3|SINE|MIR	-52015.0	NM_001081454	18550.0	Mm.5241	NM_011046	ENSMUSG00000030530	Furin	9130404I01Rik|Fur|PACE|Pcsk3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding	2.23833456962087	1.97646090909015	1.14088015091295	2.51895294311227	2.25806934320092	2.12828512877662	1.14683867814878	1.35953254850265	-0.632496610325338	0.574803012715051	0.965173523029741
Merged-chr18-61481866-4	chr18	61481773	61481973	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045419, intron 1 of 3)	MLT1K|LTR|ERVL-MaLR	2734.0	NR_045419	442846.0	Mm.417648	NR_045419		A530050N04Rik	-	RIKEN cDNA A530050N04 gene	ncRNA	5.4656160828588	4.92475866388705	4.94750840900228	5.63925971030899	5.56642105319227	5.29880892565291	6.11476987314501	5.54384479697876	0.429490767721757	0.155778858319283	0.610928767307068
Merged-chr2-153112221-2	chr2	153112121	153112321	+	590.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001172117, intron 1 of 12)	L1M5|LINE|L1	3753.0	NM_010407	15162.0	Mm.715	NM_010407	ENSMUSG00000003283	Hck	AI849071|Bmk	hemopoietic cell kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5687872-2	chr19	5687772	5687972	+	718.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_144868, intron 1 of 34)	intron (NM_144868, intron 1 of 34)	1036.0	NM_144868	104401.0	Mm.329650	NM_144868	ENSMUSG00000054874	Pcnx3	Pcnxl3|mKIAA4073	pecanex homolog 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-57336903-4	chr16	57336810	57337010	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025599, intron 1 of 9)	intron (NM_025599, intron 1 of 9)	-16367.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166522734-4	chr2	166522637	166522837	+	923.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41785.0	NR_152154	433503.0	Mm.491336	NR_152154		Gm29679	-	predicted gene, 29679	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171123109-4	chr1	171123021	171123221	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001081275, exon 2 of 6)	5' UTR (NM_001081275, exon 2 of 6)	1460.0	NM_001081275	75472.0	Mm.32760	NM_029301	ENSMUSG00000026649	Cfap126	1700009P17Rik|AV282292|Flattop|Fltp	cilia and flagella associated protein 126	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-79015050-3	chr12	79014992	79015192	+	817.733337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7815.0	NM_178745	268567.0	Mm.341747	NM_178745	ENSMUSG00000046157	Tmem229b	6330442E10Rik|9830138K24|AU019070	transmembrane protein 229B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-148963263-1	chr3	148963163	148963363	+	818.0	f0_balb.idr	Intergenic	Intergenic	-8628.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	-0.359417325864164	-0.346476391724307	-0.35071980681534	-0.353991215085248	-0.212460084804172	-0.345519351385743	0.330471710359554	0.0765445813154021	3.65568261354995	0.131709981062199	1
Merged-chr18-39145375-4	chr18	39145266	39145466	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361073, intron 10 of 21)	intron (NM_001361073, intron 10 of 21)	152221.0	NM_175164	71302.0	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding	2.55155521067812	2.42992363705859	2.06282387440784	2.15371056159088	3.17913544331593	1.74083149369453	2.36694853450553	2.41141667288235	0.502688814258322	0.551317519707912	0.959195395405638
Merged-chr6-5637487-1	chr6	5637387	5637587	+	726.0	f0_balb.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-88152.0	NM_001191023	13426.0	Mm.20893	NM_010063	ENSMUSG00000029757	Dync1i1	DH IC-1|DHIC-1|DIC|Dncic1|IC74	dynein cytoplasmic 1 intermediate chain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4230613-4	chr19	4230517	4230717	+	935.6124880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132308, intron 2 of 3)	intron (NR_132308, intron 2 of 3)	-1276.0	NM_027196	69745.0	Mm.32518	NM_027196	ENSMUSG00000024854	Pold4	2410012M21Rik|AI463381|AW060307|Polds|p12	polymerase (DNA-directed), delta 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-10355758-3	chr10	10355658	10355858	+	764.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127353, intron 30 of 36)	intron (NM_001127353, intron 30 of 36)	116556.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-84087747-4	chr10	84087629	84087829	+	926.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152790, intron 1 of 4)	intron (NR_152790, intron 1 of 4)	12968.0	NR_152790	102637349.0	Mm.402869	NR_152790	ENSMUSG00000111049	Gm34184	-	predicted gene, 34184	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-128063673-2	chr6	128063573	128063773	+	838.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356301, intron 1 of 7)	intron (NM_001356301, intron 1 of 7)	79905.0	NM_175414	109246.0	Mm.21814	NM_175414	ENSMUSG00000030352	Tspan9	6720474K14Rik|9430079M16Rik|AU018597|Tspan-9	tetraspanin 9	protein-coding	-2.05752322593321	-2.15521190974092	-2.16307242109104	-2.16952927915413	-2.17938029103484	-2.15350850414045	-2.16129297361887	-2.16837350464794	-0.683654500252594	0.846597994014493	1
Merged-chr10-19183229-1	chr10	19183129	19183329	+	717.0	f1_balb.idr	intron (NR_038022, intron 1 of 1)	RLTR1B|LTR|ERV1	15991.0	NR_038022	100504265.0	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-114917912-2	chr5	114917812	114918012	+	690.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	-5328.0	NM_001359946	231655.0	Mm.95479	NM_145209	ENSMUSG00000041827	Oasl1	7530414C13Rik|oasl9	2'-5' oligoadenylate synthetase-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-28699962-3	chr12	28699860	28700060	+	760.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161410, intron 8 of 11)	intron (NM_001161410, intron 8 of 11)	20635.0	NR_105902	102465980.0		NR_105902	ENSMUSG00000098579	Mir6937	Gm27448|mmu-mir-6937	microRNA 6937	ncRNA	0.115090482260978	1.32161937690832	1.05930379939832	0.128458363567021	0.117102476494609	0.394683126279086	0.138570271168524	0.129844196551458	-3.67881917402985	0.0685740646016509	1
Merged-chr7-84604742-1	chr7	84604642	84604842	+	639.0	f0_balb.idr	intron (NM_010176, intron 1 of 13)	intron (NM_010176, intron 1 of 13)	1200.0	NM_010176	14085.0	Mm.3798	NM_010176	ENSMUSG00000030630	Fah	swst	fumarylacetoacetate hydrolase	protein-coding	0.330810644508422	0.357554298013779	1.07707091547518	0.342131768502423	0.49617224759168	0.359498405757753	1.09052343380342	1.03770549351267	1.09189299797646	0.554730983218723	1
Merged-chr3-79419114-2	chr3	79419014	79419214	+	813.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001142953, intron 2 of 4)	intron (NM_001142953, intron 2 of 4)	73738.0	NM_001142953	100233207.0	Mm.373801	NM_001142953	ENSMUSG00000091685	Gm17359	-	predicted gene, 17359	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-83738907-2	chr8	83738780	83738980	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011925, intron 1 of 19)	B1_Mur2|SINE|Alu	2431.0	NM_001163029	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	1.45990849556448	1.16869621113252	1.87476886361401	2.59500173302488	1.95703425921826	1.63321919571862	1.8897237819683	1.83080923992129	-0.22358194258636	0.833731719879987	0.998431161219273
Merged-chr2-148401065-3	chr2	148400983	148401183	+	778.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5706.0	NM_009219	20608.0	Mm.35324	NM_009219	ENSMUSG00000037014	Sstr4	Smstr4|sst4	somatostatin receptor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-64154129-4	chr13	64154014	64154214	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175494)	promoter-TSS (NM_175494)	-915.0	NM_175494	238673.0	Mm.300065	NM_175494	ENSMUSG00000044934	Zfp367	8030486J21Rik|ZFF29a|ZFF29b|Znf367	zinc finger protein 367	protein-coding	5.45493740558189	5.33090048863103	4.44651596264984	5.01619960076606	4.64452491377667	4.98114326843597	5.21127414596365	4.50631074151236	-0.310519051660797	0.376374647832276	0.869600522734195
Merged-chr9-123842897-2	chr9	123842797	123842997	+	602.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110253, intron 2 of 17)	B2_Mm1t|SINE|B2	8764.0	NM_148925	17281.0	Mm.252941	NM_148925	ENSMUSG00000025241	Fyco1	2810409M01Rik|Mem2|RUFY3|ZFYVE7	FYVE and coiled-coil domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-51526294-2	chr6	51526194	51526394	+	639.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361581, intron 1 of 6)	ID_B1|SINE|B4	2034.0	NM_001361580	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-6476139-4	chr11	6476045	6476245	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011221)	promoter-TSS (NM_011221)	-69.0	NM_011221	19291.0	Mm.296150	NM_011221	ENSMUSG00000094483	Purb	2310015K15Rik|AA114818|Cager-2|D11Bwg0414e	purine rich element binding protein B	protein-coding	4.27167729048297	4.32767646848344	3.7687815340038	4.64288776870586	4.26087602726683	4.16098490752433	3.87928544860713	4.45763686349656	-0.108144300271051	0.797111857285052	0.998431161219273
Merged-chr18-38962518-1	chr18	38962418	38962618	+	877.5	f0_balb.idr	intron (NM_001033789, intron 4 of 4)	intron (NM_001033789, intron 4 of 4)	-30627.0	NM_001361073	71302.0	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding	0.616653899504829	0.975597620933696	0.580612995652384	0.416567715614032	0.247738707364069	0.26725048075321	0.438711631637728	0.419587700953284	-2.4479214114518	0.174931888698399	1
Merged-chr8-94227486-4	chr8	94227392	94227592	+	882.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172410, intron 2 of 22)	intron (NM_172410, intron 2 of 22)	12928.0	NM_172410	71805.0	Mm.458170	NM_172410	ENSMUSG00000032939	Nup93	2410008G02Rik	nucleoporin 93	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-84934489-1	chr1	84934389	84934589	+	601.0	f0_balb.idr	intron (NM_027921, intron 1 of 4)	intron (NM_027921, intron 1 of 4)	594.0	NM_027921	71781.0	Mm.158754	NM_027921	ENSMUSG00000026220	Slc16a14	1110004H10Rik	solute carrier family 16 (monocarboxylic acid transporters), member 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-35741174-2	chr16	35741087	35741287	+	642.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_153550, intron 2 of 8)	RMER19B|LTR|ERVK	28169.0	NM_153550	224132.0	Mm.24094	NM_153550	ENSMUSG00000022848	Dirc2	RCC4	disrupted in renal carcinoma 2 (human)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-103474446-4	chr5	103474349	103474549	+	925.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011204, intron 2 of 47)	intron (NM_011204, intron 2 of 47)	49257.0	NM_011204	19249.0	Mm.3414	NM_011204	ENSMUSG00000034573	Ptpn13	AI324989|PTP-BL|PTPL1|Ptpri|RIP	protein tyrosine phosphatase, non-receptor type 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90592158-2	chr2	90592058	90592258	+	742.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	-11511.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-101600426-4	chr3	101600321	101600521	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144900, intron 1 of 22)	intron (NM_144900, intron 1 of 22)	4286.0	NM_144900	11928.0	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99724576-4	chr15	99724473	99724673	+	996.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_155353)	promoter-TSS (NR_155353)	-99.0	NR_155353	102638434.0	Mm.364438	NR_155353		Gm16537	-	predicted gene 16537	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167718960-2	chr2	167718860	167719060	+	593.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27783.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-139490918-4	chr4	139490827	139491027	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39621.0	NM_183148	212632.0	Mm.30464	NM_183148	ENSMUSG00000041025	Iffo2	C79267	intermediate filament family orphan 2	protein-coding	3.16178311839633	3.35794337986096	3.3386082748625	3.68138258579416	3.10568719771506	3.47736407741104	2.80683816022286	3.86929075217344	-0.0296844126680987	0.958765497904403	0.998431161219273
Merged-chr13-21011333-3	chr13	21011231	21011431	+	847.2000119999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012054, intron 19 of 20)	intron (NM_012054, intron 19 of 20)	61968.0	NM_146535	258528.0	Mm.377554	NM_146535	ENSMUSG00000042869	Olfr1370	MOR256-14	olfactory receptor 1370	protein-coding	-0.694690417096781	-0.838125743314561	-0.0291756281465206	-0.846453022015779	-0.850412697290564	-0.835125259068644	-0.842863632543728	-0.84596460495052	-3.25332463139836	0.260507232687063	1
Merged-chr10-60835070-4	chr10	60834931	60835131	+	970.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3450.0	NM_001359273	107449.0	Mm.290433	NM_029770	ENSMUSG00000020099	Unc5b	6330415E02Rik|A630020F16|D10Bwg0792e|Unc5h2	unc-5 netrin receptor B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3792468-2	chr12	3792368	3792568	+	742.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14512.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-23124583-4	chr11	23124484	23124684	+	913.8250119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CCCCG)n|Simple_repeat|Simple_repeat	-27556.0	NR_131065	76993.0	Mm.59224	NR_131065	ENSMUSG00000086366	1700061J23Rik	-	RIKEN cDNA 1700061J23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-62096829-4	chr15	62096732	62096932	+	852.633301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132746, intron 1 of 6)	intron (NR_132746, intron 1 of 6)	57575.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-17868576-2	chr17	17868483	17868683	+	549.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-13395.0	NM_008215	15116.0	Mm.255701	NM_008215	ENSMUSG00000003665	Has1	HAS	hyaluronan synthase 1	protein-coding	1.02092528328142	0.830198168465818	1.13341089216086	0.570017682792544	0.55498667900287	1.85251931456853	0.583376964401214	1.227526637213	1.12390003206525	0.46798611708633	0.924409990887115
Merged-chr3-27690289-4	chr3	27690198	27690398	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356953, intron 1 of 26)	intron (NM_001356953, intron 1 of 26)	20154.0	NM_001356953	72007.0	Mm.38832	NM_173182	ENSMUSG00000039286	Fndc3b	1600019O04Rik|AW550168|Fad104|mKIAA4164	fibronectin type III domain containing 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-123101855-2	chr8	123101709	123101909	+	615.400024	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016738)	promoter-TSS (NM_016738)	-541.0	NM_016738	270106.0	Mm.319719	NM_016738	ENSMUSG00000000740	Rpl13	A52|L13	ribosomal protein L13	protein-coding	0.523997271431158	0.0557782539479656	0.0497420205919768	0.0450731036097713	0.534421406361836	0.806419792176257	0.0510748029792139	0.0458895227598668	1.49650190361573	0.496005353561507	1
Merged-chr11-107638281-4	chr11	107638188	107638388	+	922.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_105897)	TTS (NR_105897)	566.0	NR_105897	102465562.0		NR_105897	ENSMUSG00000098497	Mir6932	Gm27691|mmu-mir-6932	microRNA 6932	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-76548394-3	chr12	76548329	76548529	+	878.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_046044)	promoter-TSS (NR_046044)	-504.0	NR_046044	100504549.0	Mm.440349	NR_046044	ENSMUSG00000112388	AI463170	-	expressed sequence AI463170	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-113443521-2	chr13	113443421	113443621	+	568.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F2|LTR|ERVL-MaLR	59323.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-65423010-1	chr16	65422910	65423110	+	713.0	f0_balb.idr	Intergenic	Intergenic	-97619.0	NM_008849	18736.0	Mm.355440	NM_008849	ENSMUSG00000004842	Pou1f1	GHF-1|Hmp1|Pit-1|Pit1|Pit1-rs1|dw|dwarf	POU domain, class 1, transcription factor 1	protein-coding	2.42792236899517	2.28030337020415	3.22089315568554	3.33497967794548	2.44938460639466	3.5693758432645	1.50789587803362	2.8012005107893	-0.203522907635953	0.803332600492813	0.998431161219273
Merged-chr17-57325559-2	chr17	57325459	57325659	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163816, intron 25 of 25)	MTC|LTR|ERVL-MaLR	-33127.0	NM_001355723	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-106759034-3	chr1	106758928	106759128	+	993.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027534, intron 1 of 9)	intron (NM_027534, intron 1 of 9)	714.0	NM_027534	70750.0	Mm.458911	NM_027534	ENSMUSG00000009905	Kdsr	6330410P18Rik|9430079B08Rik|Fvt1	3-ketodihydrosphingosine reductase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-71981582-4	chr6	71981460	71981660	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60968.0	NR_046180	330350.0	Mm.246787	NR_046180	ENSMUSG00000108356	9130221F21Rik	9130221F21	RIKEN cDNA 9130221F21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120443577-2	chr11	120443477	120443677	+	939.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145363, intron 1 of 2)	intron (NM_145363, intron 1 of 2)	946.0	NM_145363	208634.0	Mm.209875	NM_145363	ENSMUSG00000039691	Tspan10	Ocsp	tetraspanin 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44522132-4	chr9	44522050	44522250	+	976.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007551, intron 1 of 1)	intron (NM_007551, intron 1 of 1)	4271.0	NM_007551	12145.0	Mm.6246	NM_007551	ENSMUSG00000047880	Cxcr5	Blr1|CXC-R5|CXCR-5|Gpcr6|MDR15	chemokine (C-X-C motif) receptor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-149816796-2	chr4	149816696	149816896	+	626.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42529.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-122935047-4	chr6	122934956	122935156	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_199311)	TTS (NM_199311)	13208.0	NM_199311	269799.0	Mm.297275	NM_199311	ENSMUSG00000049037	Clec4a1	BC049354|Dcir4	C-type lectin domain family 4, member a1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105715748-2	chr8	105715648	105715848	+	982.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_027469)	TTS (NM_027469)	7459.0	NM_027655	71046.0	Mm.280888	NM_027655	ENSMUSG00000013158	4933405L10Rik	-	RIKEN cDNA 4933405L10 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-8974012-4	chr3	8973923	8974123	+	960.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	-9877.0	NM_001025261	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	4.77970664336482	4.62886606566208	5.18847321948706	5.0644066797704	4.07586290039562	4.90002211883874	3.76725445364724	3.89010417756254	-0.885932442993801	0.0256792520230028	0.213266958310098
Merged-chr6-49822502-2	chr6	49822402	49822602	+	692.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023456)	promoter-TSS (NM_023456)	-208.0	NM_023456	109648.0	Mm.154796	NM_023456	ENSMUSG00000029819	Npy	0710005A05Rik	neuropeptide Y	protein-coding	0.667248873930038	0.419644369991082	0.231626410521603	0.732383647913124	0.677089497137219	0.424401626583898	0.232864823408241	0.228056080581824	-0.845561119088615	0.652040367155322	1
Merged-chr2-89135595-2	chr2	89135496	89135696	+	564.0	f0_balb.idr|f1_balb.idr	Intergenic	Lx3C|LINE|L1	-9867.0	NM_001011860	258177.0	Mm.377369	NM_001011860	ENSMUSG00000075101	Olfr1222	MOR233-14	olfactory receptor 1222	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-50564842-2	chr9	50564742	50564942	+	597.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008360, intron 2 of 7)	intron (NM_008360, intron 2 of 7)	-3574.0	NM_025687	66654.0	Mm.442255	NM_025687	ENSMUSG00000032065	Tex12	5730518K06Rik	testis expressed gene 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-94603284-2	chr16	94603184	94603384	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113389, intron 1 of 11)	intron (NM_001113389, intron 1 of 11)	-8135.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-52998110-4	chr2	52998021	52998221	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	140253.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-11835148-4	chr18	11835040	11835240	+	873.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045421, intron 1 of 3)	intron (NR_045421, intron 1 of 3)	-4134.0	NM_001146287	63955.0	Mm.40717	NM_022021	ENSMUSG00000040957	Cables1	Cables|ik3-1	CDK5 and Abl enzyme substrate 1	protein-coding	2.0801070827007	2.70059535313193	2.24987642072445	2.43363216514267	2.952141131229	2.60787777162683	1.72727628982631	2.64749137378607	0.396246350961731	0.627822842135301	0.980912176761026
Merged-chr18-34262983-4	chr18	34262871	34263071	+	929.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360980, intron 2 of 16)	intron (NM_001360980, intron 2 of 16)	15277.0	NM_001360979	11789.0	Mm.384171	NM_007462	ENSMUSG00000005871	Apc	AI047805|AU020952|AW124434|CC1|Min|mAPC	adenomatosis polyposis coli	protein-coding	1.99116098248294	1.56224262364286	1.88513866492147	1.67312202261598	2.00755431737076	2.75275514298318	2.49147822111241	1.98422380897198	1.4551452123834	0.114469664323077	0.530577477447165
Merged-chr11-40694951-4	chr11	40694798	40694998	+	951.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001199274, exon 1 of 7)	5' UTR (NM_001199274, exon 1 of 7)	305.0	NM_001199274	108645.0	Mm.293771	NM_134017	ENSMUSG00000042032	Mat2b	1110064C04Rik|2410018D16Rik|AI182287|AU022853|MAT-II|MATIIbeta|TGR	methionine adenosyltransferase II, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-52200160-2	chr3	52200060	52200260	+	615.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68177.0	NM_019739	56458.0	Mm.29891	NM_019739	ENSMUSG00000044167	Foxo1	AI876417|Afxh|FKHR|Fkhr1|Foxo1a	forkhead box O1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98027045-4	chr11	98026965	98027165	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009078, intron 1 of 5)	CpG	141.0	NM_009078	19921.0	Mm.10247	NM_009078	ENSMUSG00000017404	Rpl19	-	ribosomal protein L19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-105665211-4	chr1	105665093	105665293	+	911.6749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173187, intron 1 of 28)	intron (NM_173187, intron 1 of 28)	1332.0	NM_029349	227446.0	Mm.337339	NM_029349	ENSMUSG00000026319	2310035C23Rik	6430401N10|Kiaa1468|Relch|mKIAA1468	RIKEN cDNA 2310035C23 gene	protein-coding	3.18003036640101	2.67598877689362	1.83371577679667	2.95457837774034	2.3876765633934	3.99392690331095	3.15875535616081	2.64784841281568	0.760392838164751	0.308465171662989	0.809295017856989
Merged-chr11-44478645-4	chr11	44478570	44478770	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER68|LTR|ERVL	-8122.0	NM_024475	79560.0	Mm.338784	NM_024475	ENSMUSG00000041231	Ublcp1	4930527B16Rik|8430435I17Rik|BC002236	ubiquitin-like domain containing CTD phosphatase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-131502719-4	chr2	131502629	131502829	+	882.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177840, intron 1 of 3)	intron (NM_001177840, intron 1 of 3)	10867.0	NM_001177838	228608.0	Mm.136586	NM_145533	ENSMUSG00000027333	Smox	B130066H01Rik|PAO|PAOh1|SMO	spermine oxidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-39406895-2	chr18	39406755	39406955	+	695.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB7|LINE|L1	80390.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0.0448119166901896	1.32991933391322	0.0647807751490795	0.82725288634342	0.235169130572518	0.0763297988012069	0.0668790965840524	0.0586726340559429	-3.646605758669	0.075904775443921	1
Merged-chr14-122814341-4	chr14	122814244	122814444	+	843.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153443, intron 22 of 24)	intron (NR_153443, intron 22 of 24)	-98686.0	NR_155287	105245866.0	Mm.390754	NM_001039531	ENSMUSG00000075463	Gm15735	4930594M22Rik|F930011C10Rik	predicted gene 15735	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-117342279-4	chr2	117342156	117342356	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011246, intron 1 of 16)	intron (NM_011246, intron 1 of 16)	621.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-96457651-2	chr10	96457551	96457751	+	801.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC3|LINE|L1	-159350.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80613356-1	chr7	80613256	80613456	+	655.0	f1_balb.idr	intron (NM_173863, intron 6 of 14)	intron (NM_173863, intron 6 of 14)	-22661.0	NR_040343	100504375.0	Mm.322881	NR_040343	ENSMUSG00000084821	Gm15880	-	predicted gene 15880	ncRNA	-1.26712529267432	-1.23964170725001	-1.0864442713244	-1.25857937973885	-1.2666847622568	-1.23738860219653	-1.24768516780346	-0.827969198863219	1.29001860635181	0.701525239753992	1
Merged-chr6-108442538-4	chr6	108442447	108442647	+	991.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 44 of 61)	intron (NM_010585, intron 44 of 61)	-47196.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	1.98437832561558	3.09632028040144	2.16375412284014	1.2824276433779	1.4786116467259	2.41019635286649	2.93794612102851	2.92002006357247	0.514254027036487	0.590409798543008	0.969416194987468
Merged-chr1-156557099-2	chr1	156556999	156557199	+	581.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1688.0	NM_009595	11352.0	Mm.329515	NM_009595	ENSMUSG00000026596	Abl2	AA536808|Abll|Arg	v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)	protein-coding	-1.58994551673671	-1.55912852307891	-1.56844783632235	-1.57610299769523	-1.18549093183599	-1.55710898902261	-1.56633814807757	-1.57473272746952	1.78703309985663	0.610309988231842	1
Merged-chr18-54668728-3	chr18	54668636	54668836	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56992.0	NR_045400	328957.0	Mm.402781	NR_045400		9330117O12Rik	9330117O12	RIKEN cDNA 9330117O12 gene	ncRNA	3.22695318946799	1.92556414872073	2.91813090709933	2.9576331498633	6.00536115757892	6.42972899896043	5.86288497276706	6.14927523944289	4.07934886516692	3.13931072853251e-22	5.64981751813995e-19
Merged-chr12-70479394-2	chr12	70479294	70479494	+	561.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_037248, intron 2 of 4)	intron (NR_037248, intron 2 of 4)	26240.0	NM_028339	72736.0	Mm.204670	NM_028339	ENSMUSG00000021072	Tmx1	2810425A04Rik|AI465319|Txndc1	thioredoxin-related transmembrane protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-95658992-4	chr16	95658894	95659094	+	752.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43413.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-43606919-4	chr17	43606792	43606992	+	829.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013737, intron 9 of 11)	B3A|SINE|B2	-15383.0	NR_045444	73504.0	Mm.9277	NR_045444	ENSMUSG00000090307	1700071M16Rik	-	RIKEN cDNA 1700071M16 gene	ncRNA	1.91829972011257	1.99406454966228	2.2052319492065	1.87756261621393	2.34249215381111	2.88140252864508	1.57009711598643	2.15440899058274	0.797465465628146	0.379259932176962	0.871744368943447
Merged-chr3-142683471-2	chr3	142683371	142683571	+	759.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2A|LINE|L1	-17577.0	NM_173763	229905.0	Mm.289643	NM_173763	ENSMUSG00000040213	Kyat3	Ccbl2|KATIII|Kat3	kynurenine aminotransferase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-123211086-3	chr7	123210987	123211187	+	872.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3779.0	NM_146198	233836.0	Mm.211838	NM_146198	ENSMUSG00000030769	Slc5a11	2010013B02Rik|Kst1|RKST2|SMIT2|Slc5a10	solute carrier family 5 (sodium/glucose cotransporter), member 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-25184518-4	chr17	25184425	25184625	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183150)	promoter-TSS (NM_183150)	-36.0	NM_183150	214489.0	Mm.274433	NM_183150	ENSMUSG00000067722	BC003965	Ccsmst1	cDNA sequence BC003965	protein-coding	4.45736788795758	4.18196001223851	3.98422819797365	4.16377020887988	4.04383520381558	3.84734711571604	4.13935559798189	2.52422365603961	-0.602102787067274	0.228050784659216	0.72106957756012
Merged-chr4-126286790-2	chr4	126286690	126286890	+	553.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199473)	promoter-TSS (NM_199473)	-4.0	NM_199473	329941.0	Mm.296327	NM_199473	ENSMUSG00000056174	Col8a2	AI429819	collagen, type VIII, alpha 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-92371443-2	chr2	92371343	92371543	+	574.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290775)	promoter-TSS (NM_001290775)	-386.0	NM_001290775	228366.0	Mm.31158	NM_172670	ENSMUSG00000040434	Large2	5730485C17Rik|AI891893|Gyltl1b|Largel|mKIAA4105	LARGE xylosyl- and glucuronyltransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96572127-4	chr3	96572026	96572226	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5325.0	NR_040409	100038464.0	Mm.475126	NR_040409	ENSMUSG00000074398	Gm15441	-	predicted gene 15441	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-136408059-1	chr6	136407959	136408159	+	646.0	f1_c57bl6.idr	intron (NM_001201390, intron 1 of 1)	intron (NM_001201390, intron 1 of 1)	7510.0	NM_001201390	100502936.0	Mm.21182	NM_001201390	ENSMUSG00000045291	E330021D16Rik	C85549	RIKEN cDNA E330021D16 gene	protein-coding	-0.902479848333508	-1.02144765844943	-0.863736076367498	-0.62649151721534	-1.03913155476818	-1.01904219257639	-1.03003503871055	-1.03617825052874	-2.66366102193303	0.36528983588203	1
Merged-chr19-24279842-1	chr19	24279742	24279942	+	703.0	f1_c57bl6.idr	intron (NM_008044, intron 1 of 4)	MIRb|SINE|MIR	744.0	NM_008044	14297.0	Mm.7319	NM_008044	ENSMUSG00000059363	Fxn	FA|FARR|Frda|X25	frataxin	protein-coding	1.13483926516936	1.72754571251059	0.470317570807667	0.460618584699584	0.4466278014966	0.923293460279581	1.03690747776671	0.46232462837611	-1.39335535813015	0.412610518343229	0.894783826796838
Merged-chr8-120742721-4	chr8	120742610	120742810	+	978.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301811, intron 2 of 8)	intron (NM_001301811, intron 2 of 8)	4071.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-35151039-4	chr7	35150962	35151162	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31769.0	NM_007678	12606.0	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	2.47831776499645	1.46056831605199	3.24296347461231	2.37611019152399	1.56729143361754	2.70172782262155	3.73880373336552	3.01594998364179	0.77923059646076	0.375865993394969	0.869176081465326
Merged-chr10-7955908-3	chr10	7955799	7955999	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_138667, exon 1 of 7)	5' UTR (NM_138667, exon 1 of 7)	224.0	NM_138667	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-30800942-2	chr10	30800842	30801042	+	560.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358842, intron 1 of 14)	B2_Mm2|SINE|B2	2384.0	NM_001358841	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30556039-2	chr7	30555939	30556139	+	725.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001012401)	TTS (NM_001012401)	2737.0	NM_001012401	243912.0	Mm.34885	NM_001012401	ENSMUSG00000036854	Hspb6	AA387366|Gm479|Hsp20	heat shock protein, alpha-crystallin-related, B6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-114233298-4	chr2	114233197	114233397	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31865.0	NM_175466	228491.0	Mm.132523	NM_175466	ENSMUSG00000040321	Zfp770	6430601A21Rik|Znf770	zinc finger protein 770	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-81785828-3	chr13	81785779	81785979	+	945.638916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007684, intron 2 of 4)	intron (NM_007684, intron 2 of 4)	2632.0	NM_007684	12626.0	Mm.12481	NM_007684	ENSMUSG00000021537	Cetn3	MmCEN3	centrin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-148052054-2	chr3	148051954	148052154	+	778.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	902581.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-10556780-2	chr10	10556680	10556880	+	952.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_026405, intron 1 of 2)	intron (NM_026405, intron 1 of 2)	1427.0	NM_026405	67844.0	Mm.31486	NM_026405	ENSMUSG00000019832	Rab32	2810011A17Rik|AU022057	RAB32, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-38662530-3	chr15	38662375	38662575	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025494, intron 1 of 12)	intron (NM_025494, intron 1 of 12)	571.0	NM_025494	66335.0	Mm.276618	NM_025494	ENSMUSG00000022295	Atp6v1c1	1700025B18Rik|U13839	ATPase, H+ transporting, lysosomal V1 subunit C1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-83994399-3	chr8	83994282	83994482	+	850.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008854, intron 8 of 9)	B1_Mur4|SINE|Alu	-3290.0	NM_001081415	666704.0	Mm.298091	NM_001081415	ENSMUSG00000079003	Samd1	AA589507	sterile alpha motif domain containing 1	protein-coding	-2.18233058068552	-2.15536956715525	-2.16352280018114	-2.04193253143548	-2.18043796738662	-2.15360272754651	-2.16167708693786	-2.16902129354933	-0.683654500252594	0.846597994014493	1
Merged-chr2-125626643-2	chr2	125626543	125626743	+	630.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_199022)	TTS (NM_199022)	-1530.0	NM_001081091	99100.0	Mm.330545	NM_001081091	ENSMUSG00000068394	Cep152	AI851464|mKIAA0912	centrosomal protein 152	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-26637271-2	chr14	26637171	26637371	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007479)	promoter-TSS (NM_007479)	-863.0	NM_007479	11843.0	Mm.297768	NM_007479	ENSMUSG00000021877	Arf4	AA407803	ADP-ribosylation factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-147519127-2	chr4	147519027	147519227	+	781.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR51B_Mm|LTR|ERVK?	-34150.0	NM_001014397	433804.0	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154	zinc finger protein 985	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88605523-2	chr3	88605423	88605623	+	700.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-10684.0	NM_001198911	16800.0	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16376656-2	chr7	16376556	16376756	+	676.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019748, intron 2 of 8)	intron (NM_019748, intron 2 of 8)	11240.0	NM_001285892	56459.0	Mm.258530	NM_019748	ENSMUSG00000052833	Sae1	2400010M20Rik|2610044L12Rik|AL033372|AOS1|AW743391|D7Ertd177e|HSPC140|Sua1|Uble1a	SUMO1 activating enzyme subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-12461380-1	chr4	12461280	12461480	+	1000.0	f0_balb.idr	Intergenic	Intergenic	-289365.0	NM_026558	68099.0	Mm.25340	NM_026558	ENSMUSG00000028218	Fam92a	6720467C03Rik|Fam92a1	family with sequence similarity 92, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-105052302-4	chr5	105052204	105052404	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029509, intron 1 of 9)	intron (NM_029509, intron 1 of 9)	1257.0	NM_029509	76074.0	Mm.458519	NM_029509	ENSMUSG00000034438	Gbp8	5830443L24Rik|mGBP8	guanylate-binding protein 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-39801315-4	chr18	39801207	39801407	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27810.0	NM_011033	18459.0	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153694639-1	chr2	153694539	153694739	+	673.0	f1_balb.idr	Intergenic	Intergenic	45190.0	NM_001271747	13436.0	Mm.89772	NM_010068	ENSMUSG00000027478	Dnmt3b	MmuIIIB	DNA methyltransferase 3B	protein-coding	0.402772735879659	0.269702604045282	0.261849091908724	0.715831573924138	0.544247229141276	0.484288051491361	0.263586375704975	1.27079249189712	1.64267313308182	0.361230417400944	1
Merged-chr1-34013551-4	chr1	34013454	34013654	+	961.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134448, intron 1 of 97)	intron (NM_134448, intron 1 of 97)	1729.0	NM_134448	13518.0	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-30710380-4	chr10	30710283	30710483	+	660.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358842, intron 3 of 14)	intron (NM_001358842, intron 3 of 14)	-54516.0	NM_001111267	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-43532227-1	chr13	43532127	43532327	+	554.0	f1_c57bl6.idr	Intergenic	Intergenic	27964.0	NM_001081059	76137.0	Mm.426290	NM_001081059	ENSMUSG00000021371	Mcur1	6230416A05Rik|AU015498|AV136929|AW554392|C88263|Ccdc90a	mitochondrial calcium uniporter regulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80932869-4	chr10	80932792	80932992	+	993.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008655)	TTS (NM_008655)	2801.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-54764660-1	chr3	54764560	54764760	+	659.0	f0_balb.idr	intron (NM_019483, intron 1 of 5)	intron (NM_019483, intron 1 of 5)	9078.0	NM_019483	55994.0	Mm.244353	NM_019483	ENSMUSG00000027796	Smad9	MADH6|Madh8|Madh9|Smad8	SMAD family member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-80878746-2	chr12	80878646	80878846	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_178682, exon 6 of 6)	3' UTR (NM_178682, exon 6 of 6)	45701.0	NR_033786	67340.0	Mm.386790	NR_033786	ENSMUSG00000101912	1700052I22Rik	-	RIKEN cDNA 1700052I22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97929520-3	chr6	97929413	97929613	+	883.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001178049)	promoter-TSS (NM_001178049)	-304.0	NM_001178049	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-70222426-2	chr10	70222326	70222526	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	17762.0	NM_001304739	69563.0	Mm.64672	NM_001304739	ENSMUSG00000019933	Mrln	2310015B20Rik|Linc-RAM|Mln	myoregulin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-45269071-3	chr13	45268957	45269157	+	924.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-120685.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-143777181-4	chr1	143777078	143777278	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013835)	promoter-TSS (NM_013835)	-100.0	NM_001159866	56207.0	Mm.261004	NM_019562	ENSMUSG00000018189	Uchl5	5830413B11Rik|Uch37	ubiquitin carboxyl-terminal esterase L5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-63831240-4	chr5	63831136	63831336	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029554, intron 1 of 3)	intron (NM_029554, intron 1 of 3)	18741.0	NM_029554	76261.0	Mm.38143	NM_029554	ENSMUSG00000060512	0610040J01Rik	AI662686	RIKEN cDNA 0610040J01 gene	protein-coding	0.731946737209706	1.09530997671242	0.483415534139528	0.898071285382075	0.738852785945908	0.847583133112682	0.812765038576128	0.478696716553017	-0.561881698518259	0.722993355377586	1
Merged-chr11-75655089-5	chr11	75655057	75655257	+	994.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080775)	promoter-TSS (NM_001080775)	-858.0	NM_001080775	17913.0	Mm.234502	NM_008659	ENSMUSG00000017774	Myo1c	C80397|MMIb|MYO1E|NMI|mm1beta|myr2	myosin IC	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167377911-4	chr2	167377798	167377998	+	964.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28720.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-116477706-3	chr7	116477626	116477826	+	749.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26643.0	NM_001130479	53322.0	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-13903685-1	chr16	13903585	13903785	+	1000.0	f0_c57.idr	promoter-TSS (NM_053181)	promoter-TSS (NM_053181)	524.0	NM_001289562	93734.0	Mm.76554	NM_033564	ENSMUSG00000022679	Mpv17l	M-LP	Mpv17 transgene, kidney disease mutant-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-4088539-1	chr6	4088439	4088639	+	688.0	f1_c57bl6.idr	Intergenic	Intergenic	-1609.0	NM_009748	12068.0	Mm.286457	NM_009748	ENSMUSG00000032757	Bet1	AW555236|Bet-1	Bet1 golgi vesicular membrane trafficking protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80170695-2	chr10	80170595	80170795	+	855.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_007705, exon 6 of 7)	exon (NM_007705, exon 6 of 7)	-2249.0	NM_027207	69770.0	Mm.302754	NM_027207	ENSMUSG00000035595	1600002K03Rik	-	RIKEN cDNA 1600002K03 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-35520121-3	chr8	35520027	35520227	+	981.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24594.0	NM_026067	67276.0	Mm.207534	NM_026067	ENSMUSG00000031527	Eri1	3'hexo|3110010F15Rik|Thex1|eri-1	exoribonuclease 1	protein-coding	1.10154679492258	0.865912494867606	0.563418376330271	0.979813509356042	0.392100900140077	0.409704435821505	0.403924476082713	0.399031359911173	-4.40536073798489	0.0160505357549659	1
Merged-chr4-119126905-2	chr4	119126763	119126963	+	993.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011400, intron 2 of 9)	intron (NM_011400, intron 2 of 9)	18118.0	NM_011400	20525.0	Mm.21002	NM_011400	ENSMUSG00000028645	Slc2a1	Glut-1|Glut1	solute carrier family 2 (facilitated glucose transporter), member 1	protein-coding	1.35862223719485	1.9702635539212	1.02948817515865	1.31568712586849	0.785964683969588	1.42197357872021	0.818107484888246	1.44958046732208	-1.15152951969947	0.391094432042268	0.880464427322676
Merged-chr1-194978219-3	chr1	194978130	194978330	+	878.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1271.0	NR_033564	320400.0	Mm.417608	NR_033564	ENSMUSG00000097325	Gm16897	C030002c11rik	predicted gene, 16897	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-33995431-4	chr13	33995329	33995529	+	734.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001243192, intron 2 of 7)	intron (NM_001243192, intron 2 of 7)	-6934.0	NM_001359997	19766.0	Mm.374799	NM_009068	ENSMUSG00000021408	Ripk1	D330015H01Rik|RIP|RIP-1|Rinp|Rip1	receptor (TNFRSF)-interacting serine-threonine kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-149775888-2	chr4	149775788	149775988	+	822.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1621.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-33755281-2	chr2	33755181	33755381	+	842.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175184, intron 7 of 9)	intron (NM_175184, intron 7 of 9)	-50535.0	NR_045729	320482.0	Mm.442057	NR_045729	ENSMUSG00000086484	Nron	A630071L07Rik|Gm24353	non-protein coding RNA, repressor of NFAT	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-54239243-2	chr14	54239139	54239339	+	822.5	f0_balb.idr|f1_balb.idr	TTS (NM_010015)	TTS (NM_010015)	14690.0	NM_001113358	13135.0	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	1.5838948840771	1.23961267804669	0.936980433818449	1.5357811468904	1.93063723647326	1.66373079601773	2.84804658733896	0.919957756943049	1.90771807318911	0.110569660977	0.520793640554224
Merged-chr8-72151890-3	chr8	72151787	72151987	+	645.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001001491, exon 8 of 8)	3' UTR (NM_001001491, exon 8 of 8)	-9313.0	NM_023126	17274.0	Mm.162811	NM_023126	ENSMUSG00000003037	Rab8a	AA409338|Mel	RAB8A, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-121985681-4	chr14	121985533	121985733	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026861, intron 6 of 8)	intron (NM_026861, intron 6 of 8)	-20440.0	NM_183031	321019.0	Mm.265618	NM_183031	ENSMUSG00000051212	Gpr183	Ebi2	G protein-coupled receptor 183	protein-coding	2.70331109369687	1.6549949337025	1.60561181058181	2.91552393956324	1.8545267318136	2.23662956114475	2.71809689844934	2.22586089260201	-0.171244001632721	0.851216898036822	0.998431161219273
Merged-chr9-101034007-2	chr9	101033881	101034081	+	914.033325	f1_balb.idr|f1_c57bl6.idr	intron (NM_001311149, intron 1 of 13)	intron (NM_001311149, intron 1 of 13)	903.0	NM_001311149	66904.0	Mm.335385	NM_025835	ENSMUSG00000032527	Pccb	1300012P06Rik|AI314687|R74805	propionyl Coenzyme A carboxylase, beta polypeptide	protein-coding	-1.31349849087795	-1.28274354783242	-1.29349452597086	-1.3023256995151	-1.3130151546297	-1.28041376602105	-0.694015972326031	-1.30074492367298	2.57396649482007	0.456321314346772	1
Merged-chr11-34056681-4	chr11	34056563	34056763	+	984.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010696, intron 3 of 20)	intron (NM_010696, intron 3 of 20)	9735.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-4776401-2	chr7	4776301	4776501	+	756.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008350, exon 2 of 5)	exon (NM_008350, exon 2 of 5)	1740.0	NM_008350	16156.0	Mm.35814	NM_008350	ENSMUSG00000004371	Il11	IL-11	interleukin 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30448890-2	chr2	30448790	30448990	+	732.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TTTG)n|Simple_repeat|Simple_repeat	25309.0	NM_030244	72500.0	Mm.295464	NM_030244	ENSMUSG00000089762	Ier5l	2610524G09Rik	immediate early response 5-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-17408302-4	chr6	17408189	17408389	+	981.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55668.0	NM_008591	17295.0	Mm.86844	NM_008591	ENSMUSG00000009376	Met	AI838057|HGF|HGFR|Par4|c-Met	met proto-oncogene	protein-coding	2.18858643311367	2.14702648599657	1.81492825484516	2.21903546550074	1.69791043491201	2.03388887183031	1.24725697713625	2.02779873005555	-0.869531356439158	0.379960139968805	0.871963632021681
Merged-chr4-117133525-1	chr4	117133425	117133625	+	1000.0	f0_c57.idr	intron (NM_001313916, intron 1 of 14)	CpG	438.0	NM_013807	12795.0	Mm.259022	NM_013807	ENSMUSG00000028680	Plk3	Cnk|Fnk|PLK-3|PRK	polo like kinase 3	protein-coding	1.08285332831032	1.62524748126267	1.0012356204872	1.40133284725054	1.33337385552572	1.74633096975973	0.797933579213316	0.786289676059902	-0.231210340565794	0.865944843140776	0.998431161219273
Merged-chr15-96569326-4	chr15	96569188	96569388	+	820.729187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	72674.0	NM_134086	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-121476281-2	chr9	121476181	121476381	+	877.6666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19413.0	NM_001284508	12424.0	Mm.2619	NM_031161	ENSMUSG00000032532	Cck	-	cholecystokinin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-32591192-2	chr6	32591092	32591292	+	988.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3000.0	NM_175750	243743.0	Mm.444029	NM_175750	ENSMUSG00000029765	Plxna4	9330117B14|Plxa4|mKIAA1550	plexin A4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-86852366-3	chr8	86852292	86852492	+	921.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030563, intron 3 of 6)	intron (NM_030563, intron 3 of 6)	32866.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-12833966-2	chr7	12833887	12834087	+	655.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360576)	promoter-TSS (NM_001360576)	-774.0	NM_022981	65020.0	Mm.292297	NM_022981	ENSMUSG00000058638	Zfp110	2900024E01Rik|N28112|NRIF|Nrif1	zinc finger protein 110	protein-coding	0.319742913973454	1.54052583021154	0.571393707107637	0.335715639507181	0.674351401692717	1.36237635627982	0.347760981151966	0.337368251080682	-0.232813795507731	0.895759273151999	0.998431161219273
Merged-chr18-57844699-3	chr18	57844577	57844777	+	964.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34001.0	NM_009194	20496.0	Mm.399997	NM_009194	ENSMUSG00000024597	Slc12a2	9330166H04Rik|Nkcc1|mBSC2|sy-ns	solute carrier family 12, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-92933713-4	chr1	92933600	92933800	+	809.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011796)	promoter-TSS (NM_011796)	-708.0	NM_011796	23830.0	Mm.294315	NM_011796	ENSMUSG00000026270	Capn10	AW049679|Capn8|mKIAA1845	calpain 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-15264625-3	chr3	15264512	15264712	+	930.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	67690.0	NM_001076679	751864.0	Mm.431296	NM_001076679	ENSMUSG00000078783	Gm9733	-	predicted gene 9733	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-106171545-4	chr1	106171435	106171635	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040630)	promoter-TSS (NR_040630)	-11.0	NR_040630	626049.0	Mm.247410	NR_040630	ENSMUSG00000101583	Gm20753	-	predicted gene, 20753	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-62845262-4	chr14	62845173	62845373	+	949.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175546, intron 1 of 11)	intron (NM_175546, intron 1 of 11)	7552.0	NR_106174	102465889.0		NR_106174	ENSMUSG00000099245	Mir8098	Gm27462|mmu-mir-8098	microRNA 8098	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19666975-2	chr7	19666875	19667075	+	607.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1945.0	NM_019649	56457.0	Mm.290960	NM_019649	ENSMUSG00000002981	Clptm1	HS9|N14	cleft lip and palate associated transmembrane protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120065491-2	chr11	120065391	120065591	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_009734, exon 24 of 26)	exon (NM_009734, exon 24 of 26)	-18346.0	NM_007377	11302.0	Mm.6826	NM_007377	ENSMUSG00000025375	Aatk	AATYK|aatyk1|mKIAA0641	apoptosis-associated tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5794536-2	chr17	5794436	5794636	+	597.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4121.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91097845-4	chr2	91097713	91097913	+	799.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011355, intron 1 of 4)	intron (NM_011355, intron 1 of 4)	1135.0	NM_011355	20375.0	Mm.1302	NM_011355	ENSMUSG00000002111	Spi1	Dis-1|Dis1|PU.1|Sfpi-1|Sfpi1|Spi-1|Tcfpu1|Tfpu.1	spleen focus forming virus (SFFV) proviral integration oncogene	protein-coding	0.410742504072371	0.232347686308396	-0.102740589370062	-0.106046855538535	0.244861407872478	-0.0974634576561927	0.0660164658254382	-0.105470159747053	-0.818308318410927	0.712038999094013	1
Merged-chr7-99450919-4	chr7	99450813	99451013	+	862.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201352, intron 10 of 17)	intron (NM_201352, intron 10 of 17)	-15091.0	NM_028145	72184.0	Mm.153585	NM_028145	ENSMUSG00000035298	Klhl35	2810406K13Rik	kelch-like 35	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-94601985-6	chr11	94601879	94602079	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153807)	promoter-TSS (NM_153807)	-193.0	NM_153807	264895.0	Mm.386885	NM_153807	ENSMUSG00000076435	Acsf2	-	acyl-CoA synthetase family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70730281-4	chr8	70730176	70730376	+	985.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201607, intron 3 of 16)	CpG	6212.0	NM_201607	110385.0	Mm.255180	NM_201607	ENSMUSG00000031842	Pde4c	Dpde1|E130301F19Rik|dunce	phosphodiesterase 4C, cAMP specific	protein-coding	4.20875001999615	3.2584294993127	3.5483417130826	3.99295794894639	3.71557751959045	4.51715039113856	3.28353662919004	3.17769239787185	-0.0435477534124936	0.93602271945655	0.998431161219273
Merged-chr10-85003364-2	chr10	85003264	85003464	+	731.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_183172, intron 9 of 9)	intron (NM_183172, intron 9 of 9)	85751.0	NM_183172	237422.0	Mm.18936	NM_183172	ENSMUSG00000035620	Ric8b	BC051080|Ric-8|Ric-8b	RIC8 guanine nucleotide exchange factor B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-111028562-3	chr5	111028452	111028652	+	782.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001267622, intron 2 of 22)	intron (NM_001267622, intron 2 of 22)	24408.0	NR_030482	735278.0		NR_030482	ENSMUSG00000076163	Mir701	Mirn701|mir-701|mmu-mir-701	microRNA 701	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-36815029-4	chr8	36814935	36815135	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001194940, intron 4 of 17)	intron (NM_001194940, intron 4 of 17)	-81981.0	NM_001194941	50768.0	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	2.5302873594587	2.17636829265356	3.41171998975725	1.38197751803461	1.94775364909002	2.87020628221587	2.77275664577558	2.6853765946619	0.0342826254391733	0.968884332149002	0.998431161219273
Merged-chr6-122297537-2	chr6	122297437	122297637	+	862.6666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11183.0	NM_010749	17113.0	Mm.249225	NM_010749	ENSMUSG00000007458	M6pr	CD-MPR|Mpr46	mannose-6-phosphate receptor, cation dependent	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-97125520-4	chr7	97125406	97125606	+	843.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162477, intron 1 of 9)	intron (NM_001162477, intron 1 of 9)	43755.0	NM_010248	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	2.22021369081311	1.33074381053776	1.91394453133054	2.59691880494511	2.74167617870932	1.99249521399753	1.92837609294329	2.01345143917837	0.282820668884948	0.768297959933856	0.998431161219273
Merged-chr16-62785804-3	chr16	62785713	62785913	+	878.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_178925, exon 2 of 6)	exon (NM_178925, exon 2 of 6)	903.0	NM_178925	106338.0	Mm.26321	NM_178925	ENSMUSG00000050312	Nsun3	6720484A09Rik|AU022521	NOL1/NOP2/Sun domain family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-137371913-1	chr4	137371813	137372013	+	767.0	f1_c57bl6.idr	Intergenic	MER20|DNA|hAT-Charlie	-14154.0	NM_001243769	12540.0	Mm.1022	NM_009861	ENSMUSG00000006699	Cdc42	AI747189|AU018915	cell division cycle 42	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-80289396-2	chr17	80289296	80289496	+	582.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_194269)	promoter-TSS (NM_194269)	-816.0	NM_194269	378462.0	Mm.45208	NM_194269	ENSMUSG00000045257	Morn2	Mopt	MORN repeat containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80057792-4	chr10	80057691	80057891	+	759.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_183426, exon 32 of 32)	exon (NM_183426, exon 32 of 32)	3772.0	NM_001037741	625249.0	Mm.332810	NM_008162	ENSMUSG00000075706	Gpx4	GPx-4|GSHPx-4|PHGPx|mtPHGPx|snGPx	glutathione peroxidase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-27603309-1	chr7	27603209	27603409	+	719.0	f1_c57bl6.idr	intron (NM_001331108, intron 1 of 13)	intron (NM_001331108, intron 1 of 13)	-2488.0	NM_007434	11652.0	Mm.177194	NM_007434	ENSMUSG00000004056	Akt2	2410016A19Rik|AW554154|PKB|PKBbeta	thymoma viral proto-oncogene 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-156442054-2	chr2	156441902	156442102	+	789.5	f0_c57.idr|f1_c57bl6.idr	intron (NM_001291120, intron 2 of 22)	MIR|SINE|MIR	21093.0	NM_001291123	13821.0	Mm.20852	NM_013510	ENSMUSG00000027624	Epb41l1	4.1N|Epb4.1l1|NBL1|mKIAA0338	erythrocyte membrane protein band 4.1 like 1	protein-coding	1.03919369563896	0.397468649789702	1.37698838808214	1.40186651655555	0.365210368681874	0.399938595230935	0.388852123771618	0.379232815823594	-4.67255299108539	0.0102923469595958	0.111049980954344
Merged-chr4-40183081-3	chr4	40182976	40183176	+	884.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007386, intron 12 of 20)	intron (NM_007386, intron 12 of 20)	39811.0	NM_007386	11428.0	Mm.331547	NM_007386	ENSMUSG00000028405	Aco1	Aco-1|Irebp|Irp1	aconitase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31460290-2	chr14	31460190	31460390	+	591.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24190.0	NM_011894	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-48163228-3	chr9	48163132	48163332	+	652.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	177666.0	NM_030069	78252.0	Mm.31626	NM_030069	ENSMUSG00000032028	Nxpe2	4432416J03Rik|AI323362|Fam55b	neurexophilin and PC-esterase domain family, member 2	protein-coding	0.200187409054448	-0.188663638598767	-0.19189312650471	-0.194357447761323	0.125791957480138	0.238970639419952	-0.191184274950638	-0.193928652749155	0.892418447530776	0.714793487157982	1
Merged-chr12-24652831-2	chr12	24652740	24652940	+	808.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_178357, intron 1 of 3)	intron (NM_178357, intron 1 of 3)	1469.0	NM_178357	194655.0	Mm.9616	NM_178357	ENSMUSG00000020653	Klf11	9830142A17|D12Ertd427e|Tieg2|Tieg2b|Tieg3	Kruppel-like factor 11	protein-coding	1.5408853301054	1.59602058123277	1.78811174134078	1.83485151204233	1.83660663580085	1.0269513915127	1.55441707886451	0.995668689254914	-0.940434813461628	0.438042459762522	0.908612234382228
Merged-chr17-88545465-4	chr17	88545394	88545594	+	923.7160640000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028658, intron 3 of 21)	intron (NM_028658, intron 3 of 21)	15370.0	NM_028658	73825.0	Mm.271817	NM_028658	ENSMUSG00000034709	Ppp1r21	1110018J12Rik|AI426045|AW550781|Ccdc128|Klraq1	protein phosphatase 1, regulatory subunit 21	protein-coding	3.45233984099817	3.92511993543604	3.6766959115293	3.90421960016819	2.78437336381351	3.35778250270594	1.56148422029278	1.50276817479064	-1.97723912799029	0.00692465177924463	0.0845474613779278
Merged-chr3-105800219-2	chr3	105800119	105800319	+	772.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_145541, intron 1 of 7)	intron (NM_145541, intron 1 of 7)	1162.0	NM_145541	109905.0	Mm.101922	NM_145541	ENSMUSG00000068798	Rap1a	AI848598|G-22K|Krev-1|Rap1	RAS-related protein 1a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-66716044-2	chr13	66715944	66716144	+	583.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	189306.0	NM_026219	67530.0	Mm.379136	NM_026219	ENSMUSG00000021520	Uqcrb	2210415M14Rik|QP-C|QPC|UQBC|UQBP|UQPC	ubiquinol-cytochrome c reductase binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-143009499-2	chr7	143009399	143009599	+	609.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_020286, intron 2 of 7)	intron (NM_020286, intron 2 of 7)	3840.0	NM_001128081	27027.0	Mm.28172	NM_020286	ENSMUSG00000000244	Tspan32	AW208513|Art-1|BB235973|D7Wsu37e|Phemx|Tssc6	tetraspanin 32	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-134627144-2	chr4	134627044	134627244	+	635.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_207237, intron 2 of 11)	intron (NM_207237, intron 2 of 11)	-59293.0	NR_105829	102465216.0		NR_105829	ENSMUSG00000099289	Mir6403	Gm27992|mmu-mir-6403	microRNA 6403	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-38917783-2	chr6	38917683	38917883	+	651.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1203.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-12756082-4	chr17	12756008	12756208	+	704.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010515, intron 1 of 47)	intron (NM_010515, intron 1 of 47)	13598.0	NM_010515	16004.0	Mm.26553	NM_010515	ENSMUSG00000023830	Igf2r	AI661837|CD222|CI-MPR|M6P/IGF2R|Mpr300	insulin-like growth factor 2 receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-100824624-3	chr13	100824523	100824723	+	871.7666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022885, intron 4 of 15)	intron (NM_022885, intron 4 of 15)	8804.0	NM_022885	69048.0	Mm.402215	NM_022885	ENSMUSG00000021629	Slc30a5	1810010K08Rik|AF233321|ZNT5|ZTL1|ZnT-5|Zntl1	solute carrier family 30 (zinc transporter), member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101454775-3	chr7	101454675	101454875	+	652.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001008548, intron 2 of 30)	intron (NM_001008548, intron 2 of 30)	-1287.0	NR_152194	207728.0	Mm.247564	NM_001008548	ENSMUSG00000030653	Pde2a	CGS-PDE|cGSPDE	phosphodiesterase 2A, cGMP-stimulated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-9449217-4	chr13	9449121	9449321	+	891.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081426, intron 1 of 36)	intron (NM_001081426, intron 1 of 36)	172696.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-115698918-2	chr6	115698818	115699018	+	781.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR33|LTR|ERVK	-22283.0	NM_029780	110157.0	Mm.184163	NM_029780	ENSMUSG00000000441	Raf1	6430402F14Rik|AA990557|BB129353|Craf1|D830050J10Rik|Raf-1|c-Raf|cRaf|v-Raf	v-raf-leukemia viral oncogene 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-37494376-2	chr19	37494276	37494476	+	626.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29122.0	NR_131009	78640.0	Mm.234265	NR_131008		1700122C19Rik	-	RIKEN cDNA 1700122C19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32900126-1	chr2	32900026	32900226	+	548.0	f1_c57bl6.idr	intron (NM_146119, intron 1 of 13)	intron (NM_146119, intron 1 of 13)	23992.0	NM_146119	227737.0	Mm.301646	NM_146119	ENSMUSG00000026796	Fam129b	9130404D14Rik	family with sequence similarity 129, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31373407-2	chr14	31373307	31373507	+	583.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011894, exon 9 of 9)	3' UTR (NM_011894, exon 9 of 9)	36769.0	NM_009796	12339.0	Mm.201535	NM_009796	ENSMUSG00000021893	Capn7	AU022319|PalBH	calpain 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32129900-2	chr2	32129800	32130000	+	695.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21248.0	NM_172661	227723.0	Mm.25504	NM_172661	ENSMUSG00000039262	Prrc2b	5830434P21Rik|AI173903|Bat2l|Bat2l1|D430039P21|mKIAA0515	proline-rich coiled-coil 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81221582-4	chr10	81221480	81221680	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178662, intron 2 of 12)	intron (NM_178662, intron 2 of 12)	9199.0	NM_178662	16467.0	Mm.127681	NM_178662	ENSMUSG00000034958	Atcay	3322401A10Rik|BB077577|BNIP-H|CLAC|hes|ji	ataxia, cerebellar, Cayman type	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25683716-4	chr7	25683638	25683838	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172148, intron 2 of 2)	intron (NM_172148, intron 2 of 2)	2580.0	NM_172148	232987.0	Mm.22849	NM_172148	ENSMUSG00000063439	B9d2	stumpy	B9 protein domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-150393208-4	chr1	150393120	150393320	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145511)	promoter-TSS (NM_145511)	-140.0	NM_001357579	226499.0	Mm.222093	NM_145511	ENSMUSG00000006010	BC003331	1810053E15Rik|Odr4|odr-4	cDNA sequence BC003331	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-167337929-4	chr1	167337858	167338058	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12033.0	NM_019993	56752.0	Mm.292539	NM_019993	ENSMUSG00000026687	Aldh9a1	AA139417|Abaldh|ESTM40|TMABA-DH|Tmabadh	aldehyde dehydrogenase 9, subfamily A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-52743472-4	chr5	52743375	52743575	+	883.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025951, intron 1 of 9)	intron (NM_025951, intron 1 of 9)	1901.0	NM_025951	67073.0	Mm.248647	NM_025951	ENSMUSG00000029186	Pi4k2b	2610042N09Rik|4933409G22Rik	phosphatidylinositol 4-kinase type 2 beta	protein-coding	3.3160929052309	2.50736732257485	3.18457733106826	3.48613162503409	3.34247640101642	2.98397110309327	3.20903179113531	3.50311705458138	0.159816951805144	0.790045442257317	0.998431161219273
Merged-chr14-118157351-2	chr14	118157251	118157451	+	668.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_021434, intron 5 of 8)	intron (NM_021434, intron 5 of 8)	20224.0	NM_021434	58245.0	Mm.275411	NM_021434	ENSMUSG00000022131	Gpr180	AB041545|E130016I23Rik|Itr	G protein-coupled receptor 180	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-127003458-2	chr2	127003360	127003560	+	874.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-5251.0	NM_175550	108011.0	Mm.134045	NM_175550	ENSMUSG00000001998	Ap4e1	2310033A20Rik|9930028M04Rik|AV087807	adaptor-related protein complex AP-4, epsilon 1	protein-coding	-0.269039256634959	-0.256963792530787	-0.26093808084474	-0.263992268880206	0.0920475100037453	-0.0699208493024601	0.287954661561067	-0.106746358355882	3.62959974732085	0.107346264743154	1
Merged-chr10-94199006-4	chr10	94198923	94199123	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025551)	promoter-TSS (NM_025551)	14.0	NM_025551	66414.0	Mm.27886	NM_025551	ENSMUSG00000020022	Ndufa12	2410011G03Rik|AW112974	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12	protein-coding	4.4346269374865	4.39013078669954	3.3856139249428	4.60819407999208	4.38993164599767	4.42028368420717	3.95685396886036	4.26716566533731	-0.0179445719263365	0.966968961053878	0.998431161219273
Merged-chr6-29275642-2	chr6	29275542	29275742	+	899.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_023516)	TTS (NM_023516)	3016.0	NM_023516	69573.0	Mm.45161	NM_023516	ENSMUSG00000043421	Hilpda	2310016C08Rik|AW049004|Hig2	hypoxia inducible lipid droplet associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-99283756-3	chr5	99283617	99283817	+	614.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30790.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	-1.36015291771705	-1.32842431658676	-1.33874579108173	-1.34722415754512	-1.35969949349639	-1.32618761000664	-1.33640923549635	-0.791042329471244	2.42373733289067	0.484013421080845	1
Merged-chr17-80706616-4	chr17	80706522	80706722	+	973.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360278, intron 1 of 33)	intron (NM_001360278, intron 1 of 33)	21403.0	NM_001360278	225028.0	Mm.311948	NM_001081357	ENSMUSG00000024242	Map4k3	4833416M01Rik|4833416M07Rik|9530052P13Rik|Glk|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1	mitogen-activated protein kinase kinase kinase kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-12635196-4	chr13	12635110	12635310	+	888.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_003568, intron 1 of 6)	L1MB8|LINE|L1	15185.0	NR_003568	664862.0	Mm.415635	NR_003568		Gpr137b-ps	2310041G17Rik	G protein-coupled receptor 137B, pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123288283-2	chr5	123288183	123288383	+	774.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56165.0	NM_029850	77045.0	Mm.151960	NM_029850	ENSMUSG00000029438	Bcl7a	4432415N06Rik|AI448316	B cell CLL/lymphoma 7A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-146769890-1	chr6	146769790	146769990	+	581.0	f1_c57bl6.idr	intron (NM_172734, intron 9 of 13)	intron (NM_172734, intron 9 of 13)	-35640.0	NM_001289680	272322.0	Mm.333500	NM_172309	ENSMUSG00000040187	Arntl2	4632430A05Rik|BMAL2|CLIF|MOP9|bHLHe6	aryl hydrocarbon receptor nuclear translocator-like 2	protein-coding	-0.613421176041373	-0.745631749134361	-0.572554947901035	-0.126292032502181	-0.754688463420837	-0.7449158705579	-0.748104366553951	-0.750818919548329	-3.15308426868254	0.243746103782931	1
Merged-chr4-148498842-4	chr4	148498725	148498925	+	965.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039554, intron 1 of 4)	B2_Mm1t|SINE|B2	1637.0	NM_001039554	654812.0	Mm.388929	NM_001039554	ENSMUSG00000028989	Angptl7	-	angiopoietin-like 7	protein-coding	0.550586673520433	0.420049211738954	0.763954076302625	0.979310621058114	0.394832705975015	0.422009181886983	0.772240191007162	1.34672630408202	0.563023259995891	0.741426056112888	1
Merged-chr16-10488586-1	chr16	10488486	10488686	+	694.0	f0_balb.idr	intron (NM_007575, intron 1 of 18)	intron (NM_007575, intron 1 of 18)	408.0	NM_007575	12265.0	Mm.249560	NM_007575	ENSMUSG00000022504	Ciita	C2ta|EG669998|Gm9475|Mhc2ta	class II transactivator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-22155774-4	chr9	22155693	22155893	+	984.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1053.0	NM_001082532	66268.0	Mm.28924	NM_025457	ENSMUSG00000010607	Pigyl	1810008A14Rik|PIG-Y|Pigy	phosphatidylinositol glycan anchor biosynthesis, class Y-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-25122241-2	chr18	25122141	25122341	+	708.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289654, intron 22 of 24)	intron (NM_001289654, intron 22 of 24)	43724.0	NM_001142697	66648.0	Mm.263189	NM_001004361	ENSMUSG00000024269	Tpgs2	5730437P09Rik|5730494M16Rik|AI666318|Pgs2	tubulin polyglutamylase complex subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-59834908-3	chr13	59834788	59834988	+	925.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11741.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	1.09287341420281	1.61671556290349	0.881741758390509	0.662494168585692	1.10337377055285	1.63201224020455	0.888285327409289	0.664248005907278	0.0400667805131406	0.977930026961013	0.998431161219273
Merged-chr9-65346669-4	chr9	65346563	65346763	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_016688, exon 1 of 5)	exon (NM_016688, exon 1 of 5)	595.0	NM_016688	50996.0	Mm.29193	NM_016688	ENSMUSG00000041837	Pdcd7	C80112|ES18	programmed cell death 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-132102876-4	chr2	132102790	132102990	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355430, intron 1 of 15)	intron (NM_001355430, intron 1 of 15)	42218.0	NM_001355431	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4192902-2	chr19	4192802	4193002	+	999.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_031868, intron 2 of 6)	intron (NM_031868, intron 2 of 6)	728.0	NM_031868	19045.0	Mm.1970	NM_031868	ENSMUSG00000040385	Ppp1ca	Ppp1c|dism2	protein phosphatase 1, catalytic subunit, alpha isoform	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-87170564-4	chr17	87170461	87170661	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24381.0	NR_046016	399626.0	Mm.396062	NR_046016		C330024C12Rik	-	RIKEN cDNA C330024C12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-65612660-4	chr17	65612553	65612753	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355402, intron 1 of 6)	CpG	902.0	NM_001355402	30960.0	Mm.266767	NM_013933	ENSMUSG00000024091	Vapa	33kDa|VAP33	vesicle-associated membrane protein, associated protein A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-102942578-4	chr14	102942438	102942638	+	927.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40094.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-45495844-2	chr5	45495744	45495944	+	564.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_024434, intron 2 of 12)	intron (NM_024434, intron 2 of 12)	2470.0	NM_024434	66988.0	Mm.286830	NM_024434	ENSMUSG00000039682	Lap3	2410015L10Rik|AA410100|LAP-3|Lap|Lapep|Pep-7|Pep-S|Pep7|Peps	leucine aminopeptidase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-144560967-2	chr2	144560874	144561074	+	978.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355379, intron 2 of 19)	B2_Mm1a|SINE|B2	-3925.0	NM_001281816	27054.0	Mm.248492	NM_019787	ENSMUSG00000027429	Sec23b	-	SEC23 homolog B, COPII coat complex component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-73311939-2	chr2	73311839	73312039	+	567.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029022)	promoter-TSS (NM_029022)	653.0	NM_025854	66935.0	Mm.292140	NM_025854	ENSMUSG00000041777	Cir1	1700023B02Rik|2810021A19Rik|Cicr|Cir	corepressor interacting with RBPJ, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-13732400-2	chr16	13732300	13732500	+	886.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_040574, intron 1 of 2)	intron (NR_040574, intron 1 of 2)	-1916.0	NM_011987	26565.0	Mm.4214	NM_011987	ENSMUSG00000022683	Pla2g10	GX sPLA2|PLA2GX|sPLA2-X	phospholipase A2, group X	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-33300726-2	chr12	33300626	33300826	+	589.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1789.0	NM_001033436	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65573615-2	chr9	65573515	65573715	+	738.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_153119, intron 1 of 5)	intron (NM_153119, intron 1 of 5)	6472.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-120293234-3	chr14	120293087	120293287	+	834.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360380, intron 1 of 7)	intron (NM_001360380, intron 1 of 7)	-13265.0	NM_001360376	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	1.32796093954679	0.598541026321296	0.585823118076642	0.945001092085874	1.77198311269485	0.601374887403944	0.588649185508081	1.33357488787362	1.11286725664243	0.497033333637278	0.936897994490085
Merged-chr15-6547648-2	chr15	6547548	6547748	+	734.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32199.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-76057386-3	chr13	76057188	76057388	+	733.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175495)	promoter-TSS (NM_175495)	-292.0	NM_175495	238725.0	Mm.167172	NM_175495	ENSMUSG00000045509	Gpr150	C030001A19Rik|PGR11	G protein-coupled receptor 150	protein-coding	0.613349212613987	0.0252542449372412	0.0185381864162362	0.0133237060390426	0.996381213600366	0.241487834436172	0.0200235236626315	0.0142367849259068	1.208145158502	0.580845089341648	1
Merged-chr18-24223733-4	chr18	24223664	24223864	+	931.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361200, intron 1 of 12)	intron (NM_001361200, intron 1 of 12)	17770.0	NM_001160404	14423.0	Mm.30249	NM_013814	ENSMUSG00000000420	Galnt1	-	polypeptide N-acetylgalactosaminyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-89413720-4	chr6	89413612	89413812	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167736, intron 5 of 6)	intron (NM_001167736, intron 5 of 6)	-51099.0	NM_008881	18844.0	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-156559372-2	chr3	156559272	156559472	+	581.166687	f1_balb.idr|f1_c57bl6.idr	TTS (NR_040400)	TTS (NR_040400)	2315.0	NR_040398	329782.0	Mm.183459	NR_040398	ENSMUSG00000085084	4930570G19Rik	C630015G22	RIKEN cDNA 4930570G19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167588030-1	chr2	167587930	167588130	+	549.0	f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	43975.0	NM_001311146	66589.0	Mm.278783	NM_023230	ENSMUSG00000078923	Ube2v1	0610011J09Rik|AI256840|CROC-1|CROC1|D7Bwg1382e|UEV-1	ubiquitin-conjugating enzyme E2 variant 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33690884-2	chr16	33690784	33690984	+	691.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175256, intron 1 of 14)	intron (NM_175256, intron 1 of 14)	6418.0	NM_175256	77446.0	Mm.245741	NM_172934	ENSMUSG00000075254	Heg1	4632417D23Rik|5530401I02Rik|9530025L16Rik|BC038614|Gm629	heart development protein with EGF-like domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-26469513-1	chr2	26469413	26469613	+	545.0	f1_balb.idr	TTS (NR_105962)	TTS (NR_105962)	606.0	NR_105962	102465602.0		NR_105962	ENSMUSG00000098548	Mir6996	Gm27531|mmu-mir-6996	microRNA 6996	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-88175097-2	chr18	88174997	88175197	+	620.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	719110.0	NM_018821	54607.0	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-66459781-3	chr18	66459683	66459883	+	709.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021451, intron 1 of 2)	PB1D10|SINE|Alu	1179.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-143441936-3	chr5	143441852	143442052	+	637.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22541.0	NM_144915	231871.0	Mm.469963	NM_144915	ENSMUSG00000039206	Daglb	E330036I19Rik	diacylglycerol lipase, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-105675466-4	chr2	105675368	105675568	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013627)	promoter-TSS (NM_013627)	-276.0	NM_001244200	18508.0	Mm.3608	NM_013627	ENSMUSG00000027168	Pax6	1500038E17Rik|AEY11|Dey|Gsfaey11|Pax-6|Sey	paired box 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-59341408-4	chr14	59341306	59341506	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164327)	promoter-TSS (NM_001164327)	-76.0	NM_001164327	236451.0	Mm.247736	NM_001164327	ENSMUSG00000091649	Phf11b	EG236451|Gm4902	PHD finger protein 11B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-52008365-2	chr14	52008265	52008465	+	685.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001253695, exon 3 of 5)	exon (NM_001253695, exon 3 of 5)	6193.0	NM_001253695	69890.0	Mm.475652	NM_027248	ENSMUSG00000049295	Zfp219	2010302A17Rik|Znf219	zinc finger protein 219	protein-coding	-0.145678090308381	-0.131319510001952	-0.136031430295341	-0.139661549233874	0.414193717422296	-0.130256288644155	0.432214747554402	0.162333055142199	3.84091740330969	0.0935413030783291	1
Merged-chr1-172527786-1	chr1	172527686	172527886	+	738.0	f1_c57bl6.idr	intron (NM_027972, intron 1 of 11)	intron (NM_027972, intron 1 of 11)	6656.0	NM_027972	71870.0	Mm.78373	NM_027972	ENSMUSG00000026546	Cfap45	1700028D05Rik|Ccdc19|Nesg1	cilia and flagella associated protein 45	protein-coding	-0.192420506061422	-0.170289092742394	1.03645064353736	0.180629365115107	-0.0125580034289352	-0.168690905962585	-0.175852331000468	-0.182039548327699	-3.33699451869147	0.13339190152431	1
Merged-chr15-79362611-2	chr15	79362511	79362711	+	573.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001253817, exon 9 of 9)	3' UTR (NM_001253817, exon 9 of 9)	12689.0	NR_035464	100316695.0		NR_035464	ENSMUSG00000088901	Mir1943	mir-1943|mmu-mir-1943	microRNA 1943	ncRNA	0.485814564391938	0.517027040815387	1.34515099862782	1.09265095149863	0.919690525675906	0.51928756398961	0.509165801182725	1.30171230663898	-0.270092551131484	0.875915401038525	0.998431161219273
Merged-chr15-8340791-4	chr15	8340716	8340916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201232, intron 11 of 45)	intron (NM_201232, intron 11 of 45)	103647.0	NM_027707	71175.0	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	NIPBL cohesin loading factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10861640-2	chr19	10861540	10861740	+	742.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_133804, exon 8 of 11)	exon (NM_133804, exon 8 of 11)	8139.0	NM_133804	98170.0	Mm.490254	NM_133804	ENSMUSG00000024736	Tmem132a	6720481D13Rik|Hspa5bp1|Orai1|R74613	transmembrane protein 132A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-91573091-2	chr15	91572991	91573191	+	610.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001033633, exon 1 of 10)	exon (NM_001033633, exon 1 of 10)	170.0	NM_001033633	239606.0	Mm.360596	NM_001033633	ENSMUSG00000036298	Slc2a13	6530403A04|A630029G22Rik|AI505012|Gm308	solute carrier family 2 (facilitated glucose transporter), member 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-121271273-3	chr7	121271163	121271363	+	876.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F1|LTR|ERVL-MaLR	-121033.0	NM_001081327	195646.0	Mm.247449	NM_177575	ENSMUSG00000046321	Hs3st2	6430516N12Rik|A830061E14Rik|AW491345	heparan sulfate (glucosamine) 3-O-sulfotransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59743796-2	chr15	59743696	59743896	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51163.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-57761911-2	chr9	57761811	57762011	+	647.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007713, intron 1 of 12)	intron (NM_007713, intron 1 of 12)	3949.0	NM_007713	102414.0	Mm.25720	NM_007713	ENSMUSG00000032316	Clk3	AI256811	CDC-like kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28440912-4	chr7	28440785	28440985	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039192)	promoter-TSS (NM_001039192)	-52.0	NM_001039192	63986.0	Mm.194536	NM_022024	ENSMUSG00000060791	Gmfg	0610039G16Rik|2310057N07Rik|AI324845	glia maturation factor, gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43384257-3	chr4	43384157	43384357	+	956.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037709, intron 1 of 11)	intron (NM_001037709, intron 1 of 11)	2275.0	NM_001037709	100213.0	Mm.235730	NM_199057	ENSMUSG00000035969	Rusc2	AI840675|mKIAA0375	RUN and SH3 domain containing 2	protein-coding	4.69954621486634	4.18829539216964	4.38917978983703	5.36574713547069	3.31570915372581	3.43577177986156	1.81358180737259	4.01885667273823	-1.85211558511613	0.000721279723948858	0.0149450108059085
Merged-chr2-75684337-2	chr2	75684237	75684437	+	727.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_010902, intron 1 of 4)	intron (NM_010902, intron 1 of 4)	20326.0	NR_132727	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-117024557-4	chr13	117024507	117024707	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081009, intron 2 of 26)	CpG	909.0	NM_001081009	52552.0	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43535486-1	chr4	43535386	43535586	+	549.0	f1_balb.idr	intron (NM_011602, intron 48 of 56)	intron (NM_011602, intron 48 of 56)	-11932.0	NM_001277875	22004.0	Mm.646	NM_009416	ENSMUSG00000028464	Tpm2	Tpm-2|Trop-2	tropomyosin 2, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-125382819-2	chr1	125382719	125382919	+	685.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	52908.0	NM_001205386	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-35817489-4	chr16	35817399	35817599	+	866.337524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152314, intron 6 of 8)	intron (NR_152314, intron 6 of 8)	47113.0	NM_175111	66667.0	Mm.45272	NM_175111	ENSMUSG00000022849	Hspbap1	3830421G21Rik	Hspb associated protein 1	protein-coding	2.21874446553908	4.29763178297745	2.05110997034499	3.41455835782109	2.85598023146396	3.5883305155113	3.67839109975803	1.46075945457151	-0.285879050946894	0.731048801752581	0.998431161219273
Merged-chr12-112688551-4	chr12	112688494	112688694	+	970.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9754.0	NM_001100460	382639.0	Mm.11350	NM_001100460	ENSMUSG00000037638	Zbtb42	EG382639|Gm5188|simiRP58	zinc finger and BTB domain containing 42	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44305242-2	chr9	44305142	44305342	+	558.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172162, intron 1 of 9)	intron (NM_172162, intron 1 of 9)	429.0	NM_172162	102423.0	Mm.24570	NM_172162	ENSMUSG00000032119	Hinfp	AA589481|HiNF-P|Mizf	histone H4 transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-81204759-4	chr7	81204738	81204938	+	686.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8966.0	NM_008803	18584.0	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111071257-4	chr12	111071162	111071362	+	963.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198023, intron 2 of 11)	intron (NM_198023, intron 2 of 11)	31464.0	NM_198023	217864.0	Mm.23808	NM_198023	ENSMUSG00000037896	Rcor1	5730409O11|6720480E22Rik|AU042633|D12Wsu95e|Rocr1|mKIAA0071	REST corepressor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-128006420-3	chr1	128006351	128006551	+	857.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285945, intron 8 of 20)	intron (NM_001285945, intron 8 of 20)	96020.0	NM_027678	226409.0	Mm.425048	NM_027678	ENSMUSG00000036086	Zranb3	4933425L19Rik|AH2|AI316834|C730006D09	zinc finger, RAN-binding domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-37172925-4	chr19	37172823	37173023	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045329)	promoter-TSS (NR_045329)	-920.0	NR_045329	319931.0	Mm.446730	NR_045329	ENSMUSG00000097591	A330032B11Rik	-	RIKEN cDNA A330032B11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128176658-4	chr10	128176560	128176760	+	980.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019711)	promoter-TSS (NM_019711)	-92.0	NM_019711	56516.0	Mm.42247	NM_019711	ENSMUSG00000040043	Rbms2	2610315E04Rik|Scr3	RNA binding motif, single stranded interacting protein 2	protein-coding	1.12717234380822	0.740011877914204	0.728271291391899	0.90441036539528	1.24614876303843	1.29233485946515	1.67023480164218	1.20044985102693	2.28225686606003	0.108346936784839	0.515306506690471
Merged-chr6-32487566-4	chr6	32487471	32487671	+	948.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175750, intron 3 of 31)	intron (NM_175750, intron 3 of 31)	-23570.0	NR_040277	319849.0	Mm.440860	NR_040277	ENSMUSG00000086763	Plxna4os1	B230378P21Rik	plexin A4, opposite strand 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-40691546-2	chr11	40691452	40691652	+	573.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199274, intron 1 of 6)	MTC|LTR|ERVL-MaLR	1130.0	NM_134017	108645.0	Mm.293771	NM_134017	ENSMUSG00000042032	Mat2b	1110064C04Rik|2410018D16Rik|AI182287|AU022853|MAT-II|MATIIbeta|TGR	methionine adenosyltransferase II, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-117261426-1	chr9	117261326	117261526	+	793.0	f1_c57bl6.idr	intron (NM_001172121, intron 2 of 14)	intron (NM_001172121, intron 2 of 14)	-8943.0	NM_001172124	207181.0	Mm.326411	NM_178660	ENSMUSG00000039607	Rbms3	6720477E09Rik|8430436O14Rik	RNA binding motif, single stranded interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-130172470-4	chr5	130172365	130172565	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359233, intron 1 of 7)	intron (NM_001359233, intron 1 of 7)	646.0	NM_001359233	56715.0	Mm.288639	NM_019983	ENSMUSG00000025340	Rabgef1	Rab5ef|Rabex5|Rin2	RAB guanine nucleotide exchange factor (GEF) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-100538637-4	chr12	100538531	100538731	+	819.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17809.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-84325296-4	chr15	84325156	84325356	+	866.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162500)	promoter-TSS (NM_001162500)	536.0	NM_022321	64099.0	Mm.251356	NM_022321	ENSMUSG00000022439	Parvg	AI413459	parvin, gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70674885-2	chr8	70674785	70674985	+	702.099976	f1_balb.idr|f1_c57bl6.idr	intron (NM_015816, intron 1 of 4)	intron (NM_015816, intron 1 of 4)	1654.0	NM_015816	50783.0	Mm.248188	NM_015816	ENSMUSG00000031848	Lsm4	-	LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-108832577-4	chr9	108832457	108832657	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359572, intron 2 of 35)	CpG	6512.0	NM_001359572	107934.0	Mm.39945	NM_080437	ENSMUSG00000023473	Celsr3	Adgrc3|Fmi1|flamingo|mKIAA0812	cadherin, EGF LAG seven-pass G-type receptor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97395574-2	chr6	97395474	97395674	+	590.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 6 of 23)	intron (NM_145148, intron 6 of 23)	63712.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-41168344-2	chr9	41168244	41168444	+	674.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10282.0	NM_176860	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	1.0789992647164	0.51679727229553	0.849741571695123	0.820955653457171	0.895349631323492	0.518750986462551	1.31492463853117	0.50252861800553	0.146858385344099	0.928724167480046	1
Merged-chr5-100429653-4	chr5	100429562	100429762	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_034038)	promoter-TSS (NR_034038)	-127.0	NR_034038	100503199.0	Mm.392282	NR_034038	ENSMUSG00000097772	5430416N02Rik	100041797|Adapt33|Gm3514	RIKEN cDNA 5430416N02 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19291435-2	chr7	19291335	19291535	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025364, intron 1 of 6)	intron (NM_001025364, intron 1 of 6)	366.0	NM_001025364	20167.0	Mm.24142	NM_013648	ENSMUSG00000030401	Rtn2	MMS10-P|Ms10p|NSPLI|Nspl1	reticulon 2 (Z-band associated protein)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-97651464-1	chr15	97651364	97651564	+	753.0	f0_balb.idr	Intergenic	L1M2|LINE|L1	54358.0	NM_028003	71919.0	Mm.12255	NM_028003	ENSMUSG00000022466	Rpap3	2310042P20Rik|D15Ertd682e	RNA polymerase II associated protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35870409-4	chr17	35870321	35870521	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146710, intron 2 of 3)	intron (NM_001146710, intron 2 of 3)	3806.0	NM_175242	76448.0	Mm.359982	NM_175242	ENSMUSG00000034595	Ppp1r18	2310014H01Rik|AA407849|AI450394	protein phosphatase 1, regulatory subunit 18	protein-coding	4.68840316515911	5.14900216406814	4.85018596224347	4.26291422915847	4.72304909461083	4.61348161351292	4.80244622567516	3.45907724730757	-0.343539179594892	0.403286156839493	0.888785587454204
Merged-chr4-43442256-4	chr4	43442173	43442373	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011571)	promoter-TSS (NM_011571)	-4.0	NM_011571	21754.0	Mm.485441	NM_011571	ENSMUSG00000028458	Tesk1	AI326901	testis specific protein kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-63428826-3	chr10	63428752	63428952	+	844.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1246.0	NM_177612	216033.0	Mm.444692	NM_177612	ENSMUSG00000060843	Ctnna3	4930429L08Rik|4933408A16|Catna3|Vr22	catenin (cadherin associated protein), alpha 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75649426-6	chr11	75649326	75649526	+	857.694458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008916)	TTS (NM_008916)	-2083.0	NM_008659	17913.0	Mm.234502	NM_008659	ENSMUSG00000017774	Myo1c	C80397|MMIb|MYO1E|NMI|mm1beta|myr2	myosin IC	protein-coding	1.79822650985028	1.14630349141362	0.934737322456304	1.33156693245204	1.45630739777121	0.744772847669781	0.731992883600852	0.915785016498858	-1.38577873054991	0.329172964607029	0.831806493124502
Merged-chr3-95668175-4	chr3	95668083	95668283	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9462.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88331486-3	chr3	88331382	88331582	+	812.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024246, intron 3 of 3)	intron (NM_024246, intron 3 of 3)	2951.0	NM_024246	71913.0	Mm.34256	NM_024246	ENSMUSG00000001420	Tmem79	2310042N02Rik|2310074C17Rik|Matt|ma	transmembrane protein 79	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83775856-4	chr6	83775769	83775969	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009357)	promoter-TSS (NM_009357)	-57.0	NM_009357	21766.0	Mm.28371	NM_009357	ENSMUSG00000014748	Tex261	3110001O07Rik|AA409339|AI480706|AL033351|TEG-261	testis expressed gene 261	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-58933550-3	chr2	58933458	58933658	+	911.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362394, intron 10 of 13)	intron (NM_001362394, intron 10 of 13)	178374.0	NM_029692	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-102234160-3	chr7	102234054	102234254	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_111937, intron 2 of 5)	intron (NR_111937, intron 2 of 5)	11126.0	NR_111937	233575.0	Mm.302013	NM_145583	ENSMUSG00000030990	Pgap2	1810006G21Rik|C76649|Frag1	post-GPI attachment to proteins 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-140785754-2	chr6	140785654	140785854	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	158869.0	NM_001309436	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-35757809-4	chr5	35757700	35757900	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177696)	promoter-TSS (NM_001177696)	-80.0	NM_001177697	231148.0	Mm.254446	NM_177678	ENSMUSG00000029095	Ablim2	AI606905|C230091L11	actin-binding LIM protein 2	protein-coding	5.25373235464439	4.06644680397598	5.76279955047492	5.58589814323903	5.57738867546322	5.19161178018999	5.03674387335835	5.2701426892974	-0.0236370841976802	0.946759668614273	0.998431161219273
Merged-chr2-180894793-2	chr2	180894649	180894849	+	665.75	f1_balb.idr|f1_c57bl6.idr	TTS (NR_029538)	TTS (NR_029538)	709.0	NR_029538	723951.0		NR_029538	ENSMUSG00000065454	Mir124a-3	Mirn124a-3|mir-124-3|mir-124a-3	microRNA 124a-3	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-4433615-3	chr10	4433582	4433782	+	846.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024261, intron 1 of 4)	intron (NM_024261, intron 1 of 4)	1077.0	NM_024261	73419.0	Mm.346733	NM_024261	ENSMUSG00000061759	Armt1	1700052N19Rik|AW320013|AW536799	acidic residue methyltransferase 1	protein-coding	0.698784730199054	0.748973836259817	2.01573024890537	1.11013083721725	1.42739253911952	1.64386785641728	1.15603459981099	0.722581102881887	-0.00751628929342549	0.995877629064051	0.99870777277754
Merged-chr3-90246970-2	chr3	90246870	90247070	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-1222.0	NM_013901	30791.0	Mm.294709	NM_013901	ENSMUSG00000052310	Slc39a1	Zip1|Zirtl	solute carrier family 39 (zinc transporter), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-178420273-2	chr2	178420173	178420373	+	726.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081289, exon 4 of 4)	exon (NM_001081289, exon 4 of 4)	5739.0	NM_001081289	71532.0	Mm.40216	NM_001081289	ENSMUSG00000070476	Fam217b	9030418K01Rik|AI851938	family with sequence similarity 217, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-54106512-1	chr11	54106412	54106612	+	541.0	f0_balb.idr	intron (NM_001136076, intron 2 of 15)	intron (NM_001136076, intron 2 of 15)	5588.0	NM_011031	18452.0	Mm.3705	NM_011031	ENSMUSG00000018906	P4ha2	AA407196|C76437|P4hl	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-120582372-3	chr9	120582262	120582462	+	856.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5031.0	NR_073359	76100.0	Mm.48212	NR_073359	ENSMUSG00000052658	5830454E08Rik	-	RIKEN cDNA 5830454E08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-19310868-2	chr3	19310768	19310968	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001122759, exon 1 of 13)	exon (NM_001122759, exon 1 of 13)	454.0	NM_001122759	18583.0	Mm.355614	NM_008802	ENSMUSG00000069094	Pde7a	AU015378|AW047537	phosphodiesterase 7A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-20951892-4	chr5	20951784	20951984	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080977)	promoter-TSS (NM_001080977)	-62.0	NM_001080977	242860.0	Mm.254286	NM_001080977	ENSMUSG00000039968	Rsbn1l	8430412F05Rik|AI447441|C330002G24Rik	round spermatid basic protein 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128490302-2	chr10	128490202	128490402	+	953.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_010860)	TTS (NM_010860)	2707.0	NM_001317220	17904.0	Mm.337074	NM_010860	ENSMUSG00000090841	Myl6	ESMLC|LC17|LC17-GI|MLC-3|MLC1SM|Myln	myosin, light polypeptide 6, alkali, smooth muscle and non-muscle	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25178390-3	chr7	25178296	25178496	+	754.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23327.0	NR_045848	434147.0	Mm.59171	NM_001033781	ENSMUSG00000074274	D930028M14Rik	EG434147	RIKEN cDNA D930028M14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35061887-2	chr17	35061787	35061987	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001191012)	TTS (NM_001191012)	-2550.0	NR_001462	114763.0	Mm.491064	NR_001462		G6bos	G6b|NG31	G6b opposite strand	ncRNA	0.633211821262031	0.304592357368304	1.70240161894168	0.280842335062539	0.265600479481967	0.307531616365291	1.39197223166405	0.282691987698827	-0.797549276230788	0.806269049822473	0.998431161219273
Merged-chr4-5644562-1	chr4	5644462	5644662	+	871.0	f0_balb.idr	intron (NM_173426, intron 1 of 2)	CpG	472.0	NM_173426	242297.0	Mm.331470	NM_173426	ENSMUSG00000049119	Fam110b	1700012H17Rik|5031405P22|AW049855	family with sequence similarity 110, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-59847332-2	chr11	59847232	59847432	+	711.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134029)	promoter-TSS (NM_134029)	-741.0	NM_134029	103850.0	Mm.41761	NM_134029	ENSMUSG00000032615	Nt5m	2010013E09Rik|AI846937|dNT-2	5',3'-nucleotidase, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-13596172-5	chr8	13595970	13596170	+	909.9428710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 5 of 23)	intron (NM_009025, intron 5 of 23)	-33609.0	NM_001080781	66501.0	Mm.46136	NM_025601	ENSMUSG00000031452	1700029H14Rik	-	RIKEN cDNA 1700029H14 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-123117474-2	chr8	123117362	123117562	+	593.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_170684)	promoter-TSS (NM_170684)	88.0	NM_170684	102278.0	Mm.36434	NM_170684	ENSMUSG00000034796	Cpne7	AW047065	copine VII	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-128760178-4	chr6	128760052	128760252	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	28489.0	NM_001159904	17059.0	Mm.480764	NM_008527	ENSMUSG00000030325	Klrb1c	AI462337|CD161|Klrb1b|Ly-59|Ly55c|Ly59|NK-RP1|NK1.1|NKR-P1.9|NKRP1|NKRP140|Nk-1|Nk-1.2|Nk1|Nk1.2|Nkrp1b|Nkrp1c|ly-55c	killer cell lectin-like receptor subfamily B member 1C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-58732464-3	chr2	58732333	58732533	+	625.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289660, intron 1 of 7)	intron (NM_001289660, intron 1 of 7)	-22751.0	NM_001289659	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-125265217-3	chr10	125265133	125265333	+	830.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358496, intron 3 of 5)	B3|SINE|B2	43583.0	NM_001358915	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-75929168-2	chr5	75929010	75929210	+	621.166626	f0_balb.idr|f1_balb.idr	Intergenic	L1_Mus3|LINE|L1	49318.0	NM_010612	16542.0	Mm.285	NM_010612	ENSMUSG00000062960	Kdr	6130401C07|Flk-1|Flk1|Krd-1|Ly73|VEGFR-2|VEGFR2|orv|sVEGFR-2	kinase insert domain protein receptor	protein-coding	1.16214571394335	2.38218538528819	2.29394896649647	1.22525216159809	1.82240762897119	3.27827828759692	3.23274050743845	2.68022978562734	2.04523212216864	0.0331080832052237	0.254743981806076
Merged-chr1-74396672-4	chr1	74396582	74396782	+	909.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_153088, exon 7 of 7)	3' UTR (NM_153088, exon 7 of 7)	2372.0	NR_029743	387219.0		NR_029743	ENSMUSG00000065468	Mir26b	Mirn26b|mir-26b|mmu-mir-26b	microRNA 26b	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-121713720-2	chr5	121713620	121713820	+	694.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009125, intron 1 of 24)	intron (NM_009125, intron 1 of 24)	2111.0	NM_009125	20239.0	Mm.260900	NM_009125	ENSMUSG00000042605	Atxn2	9630045M23Rik|ATX2|AW544490|Sca2	ataxin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-34433049-2	chr1	34432949	34433149	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_039562)	TTS (NR_039562)	150.0	NR_039562	100628580.0		NR_039562	ENSMUSG00000092852	Mir5103	mir-5103|mmu-mir-5103|mu-mir-5103	microRNA 5103	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-35747080-4	chr18	35746956	35747156	+	844.6124880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6502.0	NM_001289592	72512.0	Mm.45995	NM_028261	ENSMUSG00000024349	Tmem173	2610307O08Rik|ERIS|MPYS|Mita|STING	transmembrane protein 173	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-43554671-3	chr17	43554600	43554800	+	934.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11061.0	NM_001254953	100043332.0	Mm.17626	NM_001254953	ENSMUSG00000096140	Ankrd66	AU041848|D730048J04Rik|Gm4368	ankyrin repeat domain 66	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47842929-3	chr17	47842826	47843026	+	763.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER20|DNA|hAT-Charlie	-8235.0	NM_001109973	17240.0	Mm.329100	NM_010783	ENSMUSG00000032717	Mdfi	I-mf|I-mfa	MyoD family inhibitor	protein-coding	1.72123833988781	1.91013462956201	1.69289814850537	2.15720050101607	1.73378492324393	2.19729969602981	2.33513180687592	2.06231144378114	0.597944646786001	0.521265285764194	0.947836760490745
Merged-chr11-107327517-4	chr11	107327388	107327588	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359616, intron 2 of 8)	intron (NM_001359616, intron 2 of 8)	-138107.0	NM_001161329	68979.0	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-50193890-2	chr17	50193790	50193990	+	590.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3393.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-131271402-4	chr3	131271296	131271496	+	926.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008212, intron 1 of 7)	intron (NM_008212, intron 1 of 7)	705.0	NM_008212	15107.0	Mm.260164	NM_008212	ENSMUSG00000027984	Hadh	AA409008|AU019341|AW742602|HCDH|Hadhsc|Schad	hydroxyacyl-Coenzyme A dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-12319745-2	chr17	12319645	12319845	+	712.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357722)	promoter-TSS (NM_001357722)	892.0	NR_045290	224523.0	Mm.188855	NR_045290	ENSMUSG00000097350	4732491K20Rik	-	RIKEN cDNA 4732491K20 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-26355507-2	chr2	26355407	26355607	+	611.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001037747, exon 7 of 12)	exon (NM_001037747, exon 7 of 12)	-3397.0	NM_001139504	52838.0	Mm.31239	NM_026828	ENSMUSG00000075467	Dnlz	1110034G11Rik|D2Bwg1335e|HEP1	DNL-type zinc finger	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78244806-4	chr15	78244716	78244916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008677)	promoter-TSS (NM_008677)	5.0	NM_008677	17972.0	Mm.2068	NM_008677	ENSMUSG00000071715	Ncf4	AI451400|p40phox	neutrophil cytosolic factor 4	protein-coding	4.25965512827635	4.16691970339118	3.67886389068786	4.1994640085507	3.41642512269227	3.83410804525284	4.43756228051747	2.98142138629213	-0.450911267514678	0.370278675393948	0.863727598865104
Merged-chr5-123996293-2	chr5	123996193	123996393	+	911.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_105999)	promoter-TSS (NR_105999)	-559.0	NR_105999	102465625.0		NR_105999	ENSMUSG00000098454	Mir7032	Gm27309|mmu-mir-7032	microRNA 7032	ncRNA	1.40593644930902	0.856788883620038	1.76877533710335	1.96971514823423	1.15964588732249	0.860538417270269	1.78508309955978	0.828923168856308	-1.15876092327124	0.399779414872714	0.885176145862419
Merged-chr10-83636290-2	chr10	83636190	83636390	+	822.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145220, intron 2 of 20)	intron (NM_145220, intron 2 of 20)	12374.0	NM_145220	216190.0	Mm.282985	NM_145220	ENSMUSG00000020263	Appl2	Dip3b	adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-39230956-3	chr12	39230855	39231055	+	969.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	447244.0	NM_001163154	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	0.256265705515323	0.0206645584378787	0.0158546568001441	0.515658866072085	0.262563058503613	0.0217512664554173	0.0169139769870017	0.522323475353815	0.0327304273181811	0.987640786525468	1
Merged-chr2-129299328-1	chr2	129299228	129299428	+	666.0	f0_c57.idr	TTS (NM_010554)	TTS (NM_010554)	1958.0	NR_040371	100503468.0	Mm.446943	NR_040371	ENSMUSG00000085498	Gm14023	-	predicted gene 14023	ncRNA	-0.325523219287089	-0.0729870329188683	-0.698346409607964	-0.701003629601155	-0.704756005197865	-0.694122997021887	-0.69758651694788	-0.700539528171548	-3.25652399919928	0.253452741391918	1
Merged-chr5-101765714-4	chr5	101765559	101765759	+	997.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173370, intron 1 of 12)	CpG	529.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-123722909-4	chr9	123722808	123723008	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-5283.0	NR_151689	93730.0	Mm.378263	NM_033322	ENSMUSG00000025245	Lztfl1	5530402H04Rik|6130400H19Rik|AI414725|AW048545	leucine zipper transcription factor-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-51099435-3	chr2	51099331	51099531	+	915.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49680.0	NM_028810	74194.0	Mm.46497	NM_028810	ENSMUSG00000017144	Rnd3	2610017M01Rik|AI661404|Arhe|Rhoe	Rho family GTPase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-19010276-2	chr10	19010176	19010376	+	873.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166402, intron 1 of 7)	intron (NM_001166402, intron 1 of 7)	1687.0	NM_001166402	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-58960194-4	chr11	58960100	58960300	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1511.0	NM_001318003	382523.0		NM_001318003		Gm12260	H3t	predicted gene 12260	protein-coding	5.92519861118391	6.06805231962964	5.94608120240196	4.91549402543467	5.12050497224184	5.94548917922979	5.46266852130914	5.45960412809754	-0.29133277204511	0.342722633920575	0.843585797799349
Merged-chr1-89455647-4	chr1	89455554	89455754	+	860.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037136, intron 1 of 16)	CpG	843.0	NM_001037136	347722.0	Mm.291135	NM_178119	ENSMUSG00000055013	Agap1	Centg2|Ggap1|R75364|mKIAA1099	ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-85254445-1	chr1	85254345	85254545	+	666.0	f1_balb.idr	intron (NM_175219, intron 5 of 7)	intron (NM_175219, intron 5 of 7)	16121.0	NM_175219	620078.0	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik	RIKEN cDNA C130026I21 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-25041341-3	chr16	25041196	25041396	+	849.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18343.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-116524712-4	chr7	116524625	116524825	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360375, intron 5 of 14)	intron (NM_001360375, intron 5 of 14)	20356.0	NM_001360375	53322.0	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-97665687-2	chr15	97665587	97665787	+	583.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40135.0	NM_028003	71919.0	Mm.12255	NM_028003	ENSMUSG00000022466	Rpap3	2310042P20Rik|D15Ertd682e	RNA polymerase II associated protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-128908763-2	chr4	128908663	128908863	+	569.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178110, intron 4 of 4)	intron (NM_178110, intron 4 of 4)	24623.0	NM_178110	67525.0	Mm.30653	NM_178110	ENSMUSG00000041000	Trim62	6330414G21Rik|AI450348|Dear1	tripartite motif-containing 62	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-68104207-1	chr10	68104107	68104307	+	618.0	f1_balb.idr	intron (NM_023598, intron 8 of 9)	intron (NM_023598, intron 8 of 9)	124637.0	NM_001359319	170799.0	Mm.209844	NM_133244	ENSMUSG00000037846	Rtkn2	B130039D23Rik|Mbf|Plekhk1	rhotekin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-103629174-2	chr5	103629074	103629274	+	822.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_029415, exon 1 of 6)	exon (NM_029415, exon 1 of 6)	229.0	NM_029415	75750.0	Mm.7446	NM_029415	ENSMUSG00000029321	Slc10a6	8430417G17Rik|C78479|Soat	solute carrier family 10 (sodium/bile acid cotransporter family), member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-58202823-4	chr19	58202730	58202930	+	962.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-93374.0	NR_040449	791347.0	Mm.452208	NR_040449		Gm10007	-	predicted gene 10007	ncRNA	2.05986750741602	2.15862851471914	3.41308506074647	2.17953675006911	2.21305171025056	1.73326430455998	3.49446536181082	2.33323572180634	0.0650239042880507	0.940444074395892	0.998431161219273
Merged-chr8-72483312-2	chr8	72483212	72483412	+	690.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177766, exon 6 of 6)	3' UTR (NM_177766, exon 6 of 6)	-8079.0	NM_138585	27967.0	Mm.30136	NM_138585	ENSMUSG00000052488	Cherp	5730408I11Rik|D8Wsu96e|DAN16|Scaf6	calcium homeostasis endoplasmic reticulum protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-17992104-3	chr13	17991986	17992186	+	649.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025904, intron 1 of 2)	intron (NM_025904, intron 1 of 2)	1265.0	NM_025904	67008.0	Mm.252918	NM_025904	ENSMUSG00000075054	Yae1d1	1600012F09Rik	Yae1 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-91270574-4	chr10	91270490	91270690	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49971.0	NR_151510	102633753.0	Mm.416936	NR_151510		4930534H03Rik	-	RIKEN cDNA 4930534H03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-53502156-2	chr11	53502056	53502256	+	548.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-17580.0	NM_033144	20362.0	Mm.274399	NM_033144	ENSMUSG00000018398	Sept8	AW046166|Sepl	septin 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167254397-4	chr2	167254300	167254500	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13863.0	NM_008968	19223.0	Mm.2339	NM_008968	ENSMUSG00000017969	Ptgis	Cyp8|Cyp8a1|Pgis	prostaglandin I2 (prostacyclin) synthase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-20033094-4	chr4	20032991	20033191	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	-8961.0	NM_010281	14590.0	Mm.20461	NM_010281	ENSMUSG00000073987	Ggh	gamma-GH	gamma-glutamyl hydrolase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76448061-2	chr15	76447961	76448161	+	891.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175457, intron 35 of 43)	intron (NM_175457, intron 35 of 43)	-9377.0	NM_198885	20289.0	Mm.322821	NM_198885	ENSMUSG00000034161	Scx	BB114693|Bhlha41|Scl	scleraxis	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-145244948-2	chr4	145244848	145245048	+	662.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011610, intron 1 of 9)	MIRb|SINE|MIR	1922.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115691253-3	chr11	115691152	115691352	+	820.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001313936, intron 2 of 5)	intron (NM_001313936, intron 2 of 5)	8282.0	NM_001313937	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-48447080-3	chr14	48446993	48447193	+	651.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132324, intron 1 of 13)	intron (NR_132324, intron 1 of 13)	741.0	NR_132324	218989.0	Mm.85211	NM_172600	ENSMUSG00000036339	Tmem260	5930435P15|6720456H20Rik	transmembrane protein 260	protein-coding	1.19308845632608	0.977468374697327	0.793234004013176	0.433781629849781	1.20765739676989	0.451618840510817	0.442681361834448	0.434995360371444	-0.924239542919432	0.605853389117516	1
Merged-chr17-35799168-2	chr17	35799068	35799268	+	771.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER44D|DNA|TcMar-Tigger	-22545.0	NM_133662	15937.0	Mm.25613	NM_133662	ENSMUSG00000003541	Ier3	AI663993|IEX-1|cI-3|gly96	immediate early response 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117344010-3	chr11	117343913	117344113	+	869.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113488, intron 1 of 9)	intron (NM_001113488, intron 1 of 9)	11700.0	NM_001113488	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-61442364-6	chr3	61442250	61442450	+	967.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	77843.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-142758394-2	chr6	142758294	142758494	+	603.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009908, intron 1 of 7)	B4|SINE|B4	1708.0	NM_009908	12764.0	Mm.3820	NM_009908	ENSMUSG00000030282	Cmas	AW208911|CMPNeu5Ac|D6Bwg0250e	cytidine monophospho-N-acetylneuraminic acid synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-40037484-4	chr12	40037399	40037599	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007487)	promoter-TSS (NM_007487)	-123.0	NM_007487	11861.0	Mm.12723	NM_007487	ENSMUSG00000047446	Arl4a	AI467555|Arl4	ADP-ribosylation factor-like 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-73374497-4	chr14	73374397	73374597	+	873.008301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008410, intron 1 of 5)	intron (NM_008410, intron 1 of 5)	10792.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-74523333-2	chr11	74523233	74523433	+	620.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001015046, intron 2 of 24)	CpG	66825.0	NM_001015046	380711.0	Mm.425690	NM_001015046	ENSMUSG00000038807	Rap1gap2	AU067654|Garnl4|Gm1561|mKIAA1039	RAP1 GTPase activating protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-112762267-4	chr12	112762184	112762384	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178911, intron 1 of 10)	intron (NM_178911, intron 1 of 10)	1629.0	NM_178911	104759.0	Mm.203915	NM_178911	ENSMUSG00000052160	Pld4	AI132321|thss	phospholipase D family, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5799058-7	chr19	5798932	5799132	+	891.0714109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_002847, exon 1 of 1)	non-coding (NR_002847, exon 1 of 1)	-3051.0	NR_144621	109146451.0		NR_144621		Mascrna	-	Malat1-associated small cytoplasmic RNA	scRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-54888238-1	chr11	54888138	54888338	+	673.333313	f0_balb.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-14616.0	NM_001329860	14778.0	Mm.200916	NM_008161	ENSMUSG00000018339	Gpx3	AA960521|EGPx|GPx|GSHPx-3|GSHPx-P	glutathione peroxidase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-20211957-4	chr13	20211842	20212042	+	984.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 4 of 21)	intron (NM_080288, intron 4 of 21)	121435.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	4.64391129555664	4.12482825246075	3.36532125299855	4.15859974787647	3.99081271815367	3.51319812531786	2.90368429470186	3.17946100072889	-0.972570724645566	0.0663614325058839	0.386381980203298
Merged-chr12-26315085-1	chr12	26314985	26315185	+	670.0	f0_balb.idr	intron (NM_080563, intron 7 of 8)	intron (NM_080563, intron 7 of 8)	-31625.0	NR_130981	75243.0	Mm.444753	NR_130981	ENSMUSG00000114048	4930549C15Rik	-	RIKEN cDNA 4930549C15 gene	ncRNA	-1.84362945061595	-1.81329140012928	-1.67810947190254	-1.83000206547234	-1.84149977556685	-1.81130325271815	-1.67603257143677	-1.82865309133977	0.037684011990387	0.991491645451152	1
Merged-chr1-55026097-4	chr1	55025961	55026161	+	991.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031179, intron 1 of 24)	intron (NM_031179, intron 1 of 24)	1417.0	NM_031179	81898.0	Mm.279736	NM_031179	ENSMUSG00000025982	Sf3b1	155kDa|2810001M05Rik|AA409119|Prp10|SAP155|SF3b155|TA-8|Targ4	splicing factor 3b, subunit 1	protein-coding	4.26562103299313	4.98958920512845	5.37577513242263	2.93786599427017	5.05357594746762	5.59284070391165	5.32522501539667	3.97828202718031	0.539385016704265	0.27128788516389	0.774856065591894
Merged-chr14-55147709-2	chr14	55147609	55147809	+	931.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30774.0	NM_177049	319984.0	Mm.19047	NM_177049	ENSMUSG00000022208	Jph4	9330157P13Rik|JP-4|JPHL1	junctophilin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53271229-2	chr4	53271129	53271329	+	654.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033139)	promoter-TSS (NR_033139)	-997.0	NR_033139	381524.0	Mm.23351	NM_001033454	ENSMUSG00000086712	AI427809	Gm1659	expressed sequence AI427809	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-53428015-3	chr19	53427895	53428095	+	769.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36801.0	NR_028427	381232.0	Mm.248624	NR_028427	ENSMUSG00000097636	Mirt1	4833407H14Rik|5430437C04Rik|5830416P10Rik|Gm10758	myocardial infarction associated transcript 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-139571742-1	chr4	139571642	139571842	+	914.0	f1_c57bl6.idr	intron (NM_183148, intron 4 of 11)	intron (NM_183148, intron 4 of 11)	-2978.0	NM_001205173	212632.0	Mm.30464	NM_183148	ENSMUSG00000041025	Iffo2	C79267	intermediate filament family orphan 2	protein-coding	2.21704028459938	2.34091097951365	1.93884757557344	1.021533169467	2.30757516988364	1.0717316409536	1.04696206075404	1.62124393047624	-0.885864286303227	0.472985502089971	0.926125823511231
Merged-chr1-80757589-4	chr1	80757492	80757692	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175291, intron 1 of 55)	intron (NM_175291, intron 1 of 55)	961.0	NM_175291	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-21186230-4	chr5	21186126	21186326	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175437)	promoter-TSS (NM_175437)	-41.0	NR_153365	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-40423728-4	chr8	40423628	40423828	+	933.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357249)	promoter-TSS (NM_001357249)	-87.0	NM_178395	70546.0	Mm.34326	NM_178395	ENSMUSG00000039470	Zdhhc2	5730415P04Rik|6430583A19Rik|DHHC-2	zinc finger, DHHC domain containing 2	protein-coding	1.86477909885767	1.9688753960385	1.15748057473506	1.13767487276795	2.24398101681123	2.44068139627878	2.04382111128794	1.8559417033238	1.59885737999468	0.136648459491761	0.577012459125694
Merged-chr4-134922434-4	chr4	134922371	134922571	+	922.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1154.0	NM_023665	27981.0	Mm.331964	NM_023665	ENSMUSG00000037266	Rsrp1	2700043I21Rik|D4Ucla2|D4Wsu53e	arginine/serine rich protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-94379689-2	chr11	94379589	94379789	+	703.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_029600, intron 1 of 30)	intron (NM_029600, intron 1 of 30)	13287.0	NM_029600	76408.0	Mm.23942	NM_029600	ENSMUSG00000020865	Abcc3	1700019L09Rik|ABC31|MLP2|MOAT-D|MRP3	ATP-binding cassette, sub-family C (CFTR/MRP), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-114449816-2	chr6	114449716	114449916	+	650.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008285, intron 2 of 2)	L2a|LINE|L2	-8706.0	NM_001317124	15465.0	Mm.333327	NM_008285	ENSMUSG00000053004	Hrh1	Bphs|H1R|HH1R|Hir	histamine receptor H1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36875075-4	chr1	36874997	36875197	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018872, intron 3 of 40)	ORR1E|LTR|ERVL-MaLR	64430.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-46970633-3	chr1	46970535	46970735	+	756.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44859.0	NM_001356417	227059.0	Mm.233889	NM_172653	ENSMUSG00000025986	Slc39a10	2900042E17Rik|5430433I10|Zip10|mKIAA1265	solute carrier family 39 (zinc transporter), member 10	protein-coding	0.721433162143212	0.302294948999653	0.459150878876179	0.685126053473555	0.536281013084273	0.303550900809924	0.463747243327481	0.690760192736781	-0.333653804567381	0.846617227207702	1
Merged-chr14-31413397-4	chr14	31413291	31413491	+	886.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011894, intron 2 of 8)	intron (NM_011894, intron 2 of 8)	4286.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67287995-3	chr10	67287907	67288107	+	800.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2726.0	NM_001036293	641340.0	Mm.136223	NM_001036293	ENSMUSG00000075000	Nrbf2	NRBF-2	nuclear receptor binding factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128722433-4	chr2	128722316	128722516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 1 of 18)	intron (NM_008587, intron 1 of 18)	23501.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122331351-2	chr8	122331251	122331451	+	558.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009569, intron 4 of 9)	intron (NM_009569, intron 4 of 9)	31477.0	NM_133202	170732.0	Mm.154808	NM_133202	ENSMUSG00000039079	Trhr2	TRH-R2	thyrotropin releasing hormone receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-62994140-2	chr2	62994040	62994240	+	791.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133207, intron 2 of 15)	Lx3A|LINE|L1	190147.0	NM_133207	170738.0	Mm.242532	NM_133207	ENSMUSG00000059742	Kcnh7	9330137I11Rik|Kv11.3|erg3	potassium voltage-gated channel, subfamily H (eag-related), member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-124424666-4	chr9	124424558	124424758	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_027950, exon 2 of 2)	non-coding (NR_027950, exon 2 of 2)	871.0	NR_015516	75135.0	Mm.476814	NR_015516		4930526I15Rik	1600027J15Rik	RIKEN cDNA 4930526I15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-105281229-1	chr10	105281129	105281329	+	602.0	f0_c57.idr	intron (NM_177368, intron 8 of 11)	RMER15|LTR|ERVL	293250.0	NM_177368	278279.0	Mm.25225	NM_177368	ENSMUSG00000036019	Tmtc2	8430438D04Rik|D330034A10Rik	transmembrane and tetratricopeptide repeat containing 2	protein-coding	1.45298549862936	1.17589815242582	0.7899740438581	1.34945298246318	0.927302498424655	1.33176819906356	0.984779904796608	1.35711758892545	-0.243224088946133	0.855306651474839	0.998431161219273
Merged-chr14-106027094-2	chr14	106026994	106027194	+	689.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-79104.0	NM_198601	212085.0	Mm.78128	NM_198601	ENSMUSG00000022113	Trim52	4921513B05Rik	tripartite motif-containing 52	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166700984-2	chr2	166700884	166701084	+	772.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	L2a|LINE|L2	12848.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-138118570-4	chr3	138118481	138118681	+	987.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355052, intron 7 of 21)	intron (NM_001355052, intron 7 of 21)	13072.0	NM_008642	17777.0	Mm.2941	NM_008642	ENSMUSG00000028158	Mttp	1810043K16Rik|MTP	microsomal triglyceride transfer protein	protein-coding	3.11933249335073	2.97656202640767	2.59749614466286	3.28442243974785	3.29206778552306	3.3340523254042	3.48216746595978	3.76315019777518	0.760305660996732	0.190949212428299	0.669546561020494
Merged-chr9-41174207-1	chr9	41174107	41174307	+	761.0	f1_balb.idr	Intergenic	Intergenic	-16145.0	NM_176860	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	0.208775463682567	0.0494728874076032	0.039679510262071	0.0319803302635032	1.44677560260196	0.675212312587227	0.0418571507239219	0.0333346824688965	3.74154291899097	0.0671849263744321	1
Merged-chr9-37101843-3	chr9	37101734	37101934	+	832.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029838, intron 1 of 12)	intron (NM_001029838, intron 1 of 12)	45488.0	NM_148950	208076.0	Mm.260335	NM_148950	ENSMUSG00000035934	Pknox2	D230005H23Rik|Prep2	Pbx/knotted 1 homeobox 2	protein-coding	-1.58994551673671	-1.55912852307891	-1.56844783632235	-1.57610299769523	-1.18549093183599	-1.55710898902261	-1.56633814807757	-1.57473272746952	1.78703309985663	0.610309988231842	1
Merged-chr3-95296274-4	chr3	95296158	95296358	+	885.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_199475)	TTS (NM_199475)	10546.0	NM_001085383	71790.0	Mm.218844	NM_023628	ENSMUSG00000015702	Anxa9	1110003P15Rik|2310069F17Rik	annexin A9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-100600568-4	chr13	100600449	100600649	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_178410, exon 4 of 6)	exon (NM_178410, exon 4 of 6)	16395.0	NM_178410	218518.0	Mm.25300	NM_178410	ENSMUSG00000021636	Marveld2	BC003296|MARVD2|Mrvldc2|Tric|Trica|Tricb|Tricc	MARVEL (membrane-associating) domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-34343483-2	chr13	34343383	34343583	+	564.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033167, intron 1 of 10)	intron (NM_001033167, intron 1 of 10)	1699.0	NM_001033167	73102.0	Mm.23932	NM_001033167	ENSMUSG00000038267	Slc22a23	3110004L20Rik	solute carrier family 22, member 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-59212504-4	chr11	59212413	59212613	+	854.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001130408, exon 5 of 5)	3' UTR (NM_001130408, exon 5 of 5)	4152.0	NM_024210	67862.0	Mm.358708	NM_024210	ENSMUSG00000020441	2310033P09Rik	Mmtag2	RIKEN cDNA 2310033P09 gene	protein-coding	1.01610566564325	0.810356653729604	0.304837504650549	0.299422248031453	0.441179412637889	0.513141452019908	0.776088910445374	0.30036918820371	-0.809444949580382	0.654654798299369	1
Merged-chr14-63111829-4	chr14	63111732	63111932	+	986.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER2|DNA|TcMar-Tigger	-10630.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10709564-4	chr19	10709480	10709680	+	965.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361959, intron 2 of 3)	intron (NM_001361959, intron 2 of 3)	8812.0	NM_001361964	107305.0	Mm.19091	NM_181403	ENSMUSG00000048832	Vps37c	5730409F24Rik|AU042646	vacuolar protein sorting 37C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-7204957-3	chr1	7204874	7205074	+	848.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	116054.0	NM_183028	319263.0	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-17885474-4	chr5	17885390	17885590	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159558, intron 1 of 15)	intron (NM_001159558, intron 1 of 15)	3469.0	NM_001159558	12491.0	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 molecule	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101982038-4	chr11	101981941	101982141	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028207, intron 1 of 2)	intron (NM_028207, intron 1 of 2)	2750.0	NM_028207	72349.0	Mm.196295	NM_028207	ENSMUSG00000003518	Dusp3	2210015O03Rik|5031436O03Rik|T-DSP11|VHR	dual specificity phosphatase 3 (vaccinia virus phosphatase VH1-related)	protein-coding	5.51565838043318	4.58613487647071	6.00767924476559	5.77624052190715	5.06187334576416	4.55695274943393	5.79459503416557	5.34356173277253	-0.351035266036393	0.321985095259073	0.823903365381149
Merged-chr4-126136359-2	chr4	126136259	126136459	+	708.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028800, intron 7 of 10)	(CA)n|Simple_repeat|Simple_repeat	-11644.0	NM_172145	230752.0	Mm.41569	NM_172145	ENSMUSG00000050212	Eva1b	2610027C15Rik|Fam176b	eva-1 homolog B (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-137117530-4	chr2	137117430	137117630	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG-8595	-1010.0	NM_013822	16449.0	Mm.22398	NM_013822	ENSMUSG00000027276	Jag1	ABE2|Gsfabe2|Htu|Ozz|Ser-1	jagged 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-97436040-3	chr13	97435963	97436163	+	725.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110432, intron 1 of 1)	intron (NR_110432, intron 1 of 1)	1093.0	NR_110432	100039691.0	Mm.219358	NR_110430	ENSMUSG00000078952	Lncenc1	Gm11019|Gm2373|Lincenc1|Platr18|linc-Enc1	long non-coding RNA, embryonic stem cells expressed 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-135211065-4	chr3	135210973	135211173	+	877.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6B|LTR|ERVK	-1490.0	NM_173762	229841.0	Mm.161470	NM_173762	ENSMUSG00000045328	Cenpe	312kDa|AU019344|BC049989|C530022J18|CENP-E|Kif10	centromere protein E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-98775810-2	chr10	98775710	98775910	+	947.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-138832.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106824684-2	chr11	106824584	106824784	+	834.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_025481, exon 17 of 19)	exon (NM_025481, exon 17 of 19)	35432.0	NM_001166685	320162.0	Mm.30524	NM_177088	ENSMUSG00000018372	Cep95	4732496G21Rik|AI118346|AI448335|Ccdc45|D330027A14Rik|F630025I20Rik	centrosomal protein 95	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-113993281-4	chr5	113993178	113993378	+	920.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198109, intron 1 of 14)	CpG	479.0	NM_198109	231637.0	Mm.389682	NM_198109	ENSMUSG00000042121	Ssh1	AW551225|Gm1394|Gm1395|SSH-1|SSH-1L	slingshot protein phosphatase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-45392227-4	chr13	45392131	45392331	+	984.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153789, intron 2 of 6)	intron (NM_153789, intron 2 of 6)	2489.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-9066087-1	chr11	9065987	9066187	+	754.0	f1_c57bl6.idr	intron (NM_001037928, intron 6 of 6)	L1M2|LINE|L1	-17096.0	NM_177576	194974.0	Mm.79210	NM_177576	ENSMUSG00000040985	Sun3	Sunc1	Sad1 and UNC84 domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-60749638-2	chr10	60749538	60749738	+	907.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023596, intron 2 of 5)	intron (NM_023596, intron 2 of 5)	3144.0	NM_023596	71279.0	Mm.284462	NM_023596	ENSMUSG00000020100	Slc29a3	4933435C21Rik|AW987637|Ent3	solute carrier family 29 (nucleoside transporters), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80806695-2	chr10	80806541	80806741	+	746.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_007445, exon 4 of 5)	exon (NM_007445, exon 4 of 5)	1393.0	NM_007445	11705.0	Mm.376094	NM_007445	ENSMUSG00000035262	Amh	MIS	anti-Mullerian hormone	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141273484-2	chr7	141273384	141273584	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114322, intron 7 of 14)	intron (NM_001114322, intron 7 of 14)	3302.0	NM_028069	72040.0	Mm.29080	NM_028069	ENSMUSG00000025497	Cdhr5	1810074H01Rik|AI481143|Mucdhl|Mupcdh	cadherin-related family member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-110605274-2	chr13	110605175	110605375	+	722.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	210231.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	1.23214537236332	0.738421547156038	1.47582759228913	0.488019917763237	0.474934782089935	0.511319429290322	1.39763871848589	0.489618853068332	-1.05380096828776	0.54055494258285	0.954866069207078
Merged-chr9-90231573-2	chr9	90231473	90231673	+	857.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 3 of 12)	B1F2|SINE|Alu	39196.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-44016320-4	chr4	44016221	44016421	+	932.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080384, intron 2 of 5)	intron (NM_001080384, intron 2 of 5)	3671.0	NM_001290470	12757.0	Mm.298875	NM_016760	ENSMUSG00000028478	Clta	AV026556|Lca	clathrin, light polypeptide (Lca)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-6140292-1	chr8	6140192	6140392	+	585.0	f0_c57.idr	Intergenic	Lx6|LINE|L1	-1035005.0	NM_011388	20494.0	Mm.3500	NM_011388	ENSMUSG00000023073	Slc10a2	9130221J18Rik|AI605518|ASBT|IBAT|ISBT	solute carrier family 10, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-102828664-2	chr2	102828501	102828701	+	696.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001177785, exon 13 of 16)	exon (NM_001177785, exon 13 of 16)	73064.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80024392-2	chr10	80024292	80024492	+	831.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347074, intron 10 of 22)	intron (NM_001347074, intron 10 of 22)	4717.0	NM_027521	70719.0	Mm.243954	NM_027521	ENSMUSG00000035697	Arhgap45	6330406L22Rik|AW539505|Ha-1|Hmha1	Rho GTPase activating protein 45	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-9052252-4	chr12	9052152	9052352	+	920.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22255.0	NM_029321	75516.0	Mm.37581	NM_029321	ENSMUSG00000066637	Ttc32	1700013G20Rik	tetratricopeptide repeat domain 32	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-120588781-4	chr5	120588696	120588896	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145853)	promoter-TSS (NM_145853)	-183.0	NM_145853	252972.0	Mm.114054	NM_145853	ENSMUSG00000032741	Tpcn1	5730403B01Rik|Tpc1|mKIAA1169	two pore channel 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-4601980-2	chr2	4601880	4602080	+	707.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177844, intron 8 of 11)	intron (NM_001177844, intron 8 of 11)	42226.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141823148-4	chr4	141823030	141823230	+	814.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007919, intron 2 of 7)	MTD|LTR|ERVL-MaLR	2875.0	NM_007919	13706.0	Mm.45316	NM_007919	ENSMUSG00000058579	Cela2a	Ela-2|Ela2|Ela2a	chymotrypsin-like elastase family, member 2A	protein-coding	5.53631138916689	4.90095026329264	5.04745100330377	5.64199268044412	3.16489733754501	3.61251108571467	4.08726569319147	1.77105875892965	-2.47557578969715	2.88477090818298e-07	2.25175693752333e-05
Merged-chr7-12818804-4	chr7	12818686	12818886	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026046)	promoter-TSS (NM_026046)	74.0	NM_026046	67230.0	Mm.333574	NM_026046	ENSMUSG00000057894	Zfp329	2810439M05Rik|4632409L22Rik|ZNF329	zinc finger protein 329	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80105655-4	chr10	80105547	80105747	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 1 of 4)	intron (NR_038088, intron 1 of 4)	-2945.0	NM_001359637	216161.0	Mm.262102	NM_183426	ENSMUSG00000035673	Sbno2	BC019206|F730040C21|Sno|Stno	strawberry notch 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-125561497-4	chr7	125561388	125561588	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001008700, intron 1 of 10)	intron (NM_001008700, intron 1 of 10)	9206.0	NM_001008700	16190.0	Mm.233802	NM_010557	ENSMUSG00000030748	Il4ra	CD124|Il4r	interleukin 4 receptor, alpha	protein-coding	5.148594183456	4.37583153745663	5.34328100091575	5.461762109429	5.21160760052254	4.66302697556109	5.79480592376372	5.55864926766098	0.261768585432593	0.447459493095328	0.914498173479176
Merged-chr5-93150769-2	chr5	93150671	93150871	+	786.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001009818, intron 3 of 9)	intron (NM_001009818, intron 3 of 9)	55724.0	NM_017367	12453.0	Mm.250419	NM_017367	ENSMUSG00000063015	Ccni	-	cyclin I	protein-coding	0.991363971618735	0.69266538255672	0.0114008566206914	0.00592157812559324	-0.00188920128081502	0.0200260170183354	0.0129601694086499	0.194539828256385	-3.37323978910379	0.120081690792647	1
Merged-chr13-42984846-1	chr13	42984746	42984946	+	819.0	f1_balb.idr	intron (NM_001005740, intron 2 of 12)	MTC|LTR|ERVL-MaLR	118599.0	NM_001302636	218194.0	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	2.48002096043244	2.64807055808976	2.83747585324505	3.33404087324874	3.33146275709911	2.82404575502774	3.73334786617207	4.03289336420809	1.14188837397606	0.0692692482228957	0.395265704300689
Merged-chr17-28468081-2	chr17	28467981	28468181	+	652.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_010220, intron 1 of 10)	intron (NM_010220, intron 1 of 10)	18068.0	NM_010220	14229.0	Mm.276405	NM_010220	ENSMUSG00000024222	Fkbp5	D17Ertd592e|Dit1|FKBP-5|FKBP51	FK506 binding protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-149788451-2	chr4	149788351	149788551	+	555.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14184.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	0.547486499196	1.16034253482074	0.573241778283815	1.49222124409681	0.549920509469276	1.17159648897678	0.575951880164956	1.50256333631394	0.0321878158936658	0.984678411838768	0.998431161219273
Merged-chr12-102366251-4	chr12	102366130	102366330	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177620, intron 5 of 9)	intron (NM_177620, intron 5 of 9)	73583.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-64181436-4	chr15	64181332	64181532	+	907.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 5 of 28)	intron (NM_001276461, intron 5 of 28)	-120984.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-51701573-4	chr3	51701464	51701664	+	844.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 2 of 4)	intron (NM_001004176, intron 2 of 4)	40385.0	NM_001310482	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-121453205-2	chr5	121453106	121453306	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026129)	promoter-TSS (NM_026129)	497.0	NM_029912	77462.0	Mm.358781	NM_029912	ENSMUSG00000029452	Tmem116	4930406A18Rik|4930513P12Rik|C030022K24Rik	transmembrane protein 116	protein-coding	-1.19470384696939	-0.680995530274879	-1.18000752418307	-1.02205573797408	-1.19422589551209	-1.16668601215437	-1.17752894443093	-1.18739136583846	-2.58939083648206	0.425227369375087	1
Merged-chr6-4902950-4	chr6	4902874	4903074	+	984.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181595)	promoter-TSS (NM_181595)	-346.0	NM_181595	243725.0	Mm.332901	NM_181595	ENSMUSG00000032827	Ppp1r9a	2810430P21Rik|4930518N04Rik|5330407E15|A230094E16Rik|BB181831|NRB|mKIAA1222|neurabin-I	protein phosphatase 1, regulatory (inhibitor) subunit 9A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-138096269-1	chr3	138096169	138096369	+	663.0	f1_c57bl6.idr	intron (NM_001355052, intron 19 of 21)	B1_Mus2|SINE|Alu	-28881.0	NR_037975	329763.0	Mm.169710	NM_177860	ENSMUSG00000049349	Gm5105	D830013H12|EG329763	predicted gene 5105	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-76150537-2	chr14	76150437	76150637	+	784.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39646.0	NM_013745	27275.0	Mm.21138	NM_013745	ENSMUSG00000022009	Nufip1	Nufip	nuclear fragile X mental retardation protein interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-91681788-2	chr6	91681688	91681888	+	678.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D11|SINE|Alu	-2279.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-118959880-4	chr2	118959780	118959980	+	906.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33383.0	NM_028117	72136.0	Mm.486238	NM_028117	ENSMUSG00000074916	Chst14	2600016L03Rik|D4ST-1|D4st1	carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 14	protein-coding	4.46785777167349	5.00669331588057	3.6968248086738	4.5017352181338	2.85464383240052	3.48475554477986	2.04770801928469	3.24836803934278	-2.11297542493013	0.000115030223736691	0.00342748168309476
Merged-chr15-74959391-2	chr15	74959291	74959491	+	874.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001164036, exon 4 of 4)	3' UTR (NM_001164036, exon 4 of 4)	4285.0	NM_001164040	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-116535604-1	chr14	116535504	116535704	+	598.0	f1_c57bl6.idr	Intergenic	Lx3_Mus|LINE|L1	-389693.0	NM_001079844	23888.0	Mm.440025	NM_011821	ENSMUSG00000058571	Gpc6	-	glypican 6	protein-coding	1.0109505714324	0.677621125191677	2.27328274540262	1.72986749861244	0.619064281674239	1.66176621546039	0.662307919586239	0.64494046620567	-1.91620243352404	0.205333972331393	0.692768056351573
Merged-chr8-3392997-4	chr8	3392916	3393116	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133962)	promoter-TSS (NM_133962)	8.0	NM_133962	102098.0	Mm.170461	NM_133962	ENSMUSG00000004568	Arhgef18	AI467246|D030053O22Rik	rho/rac guanine nucleotide exchange factor (GEF) 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115478781-2	chr11	115478681	115478881	+	834.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177778, intron 2 of 2)	intron (NM_177778, intron 2 of 2)	3114.0	NM_001361594	276905.0	Mm.38019	NM_177778	ENSMUSG00000057219	Armc7	A630084C13|BC023126	armadillo repeat containing 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-66820439-4	chr15	66820339	66820539	+	999.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009192, intron 1 of 8)	intron (NM_009192, intron 1 of 8)	11390.0	NM_001029841	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-136513791-1	chr6	136513691	136513891	+	652.0	f0_c57.idr	Intergenic	(CAAAA)n|Simple_repeat|Simple_repeat	-5060.0	NM_019426	54343.0	Mm.173271	NM_019426	ENSMUSG00000030213	Atf7ip	2610204M12Rik|AM|Mcaf1	activating transcription factor 7 interacting protein	protein-coding	2.43746777489821	0.833060443187606	1.2927886485381	2.47256997931906	1.82664888163131	0.838529175462799	0.813735817695525	0.791679780239417	-2.22253349292129	0.110583020210483	0.520793640554224
Merged-chr10-53881419-4	chr10	53881347	53881547	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-130538.0	NM_001081428	75906.0	Mm.436785	NM_001081428	ENSMUSG00000019856	Fam184a	3110012E06Rik|4930438C08Rik|4930589M24Rik	family with sequence similarity 184, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-69205808-4	chr3	69205718	69205918	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16601.0	NM_027843	71619.0	Mm.98122	NM_027843	ENSMUSG00000098207	Arl14	9130014L17Rik|Arf7	ADP-ribosylation factor-like 14	protein-coding	5.14040779542491	4.64829861327304	5.2693684545798	4.9269516055874	5.51318273223098	5.73197900050784	6.19007384340883	5.34553590324449	0.813492596732438	0.00740753459354844	0.0882285903905303
Merged-chr9-45281073-4	chr9	45280962	45281162	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11913.0	NM_001324486	16154.0	Mm.379327	NM_008348	ENSMUSG00000032089	Il10ra	AW553859|CDw210|CDw210a|IL-10R1|IL-10RA|Il10r|mIL-10R	interleukin 10 receptor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-123531079-2	chr9	123530979	123531179	+	791.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357485, intron 1 of 19)	intron (NM_001357485, intron 1 of 19)	1326.0	NM_030692	83493.0	Mm.273671	NM_030692	ENSMUSG00000025240	Sacm1l	SAC1|Sac1p|mKIAA0851	SAC1 suppressor of actin mutations 1-like (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-99263161-4	chr10	99263057	99263257	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026268)	promoter-TSS (NM_026268)	-74.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135780342-1	chr5	135780242	135780442	+	546.0	f1_balb.idr	intron (NM_008617, intron 1 of 8)	PB1|SINE|Alu	1693.0	NM_008617	17448.0	Mm.297096	NM_008617	ENSMUSG00000019179	Mdh2	MDH|Mdh-2|Mor-1|Mor1	malate dehydrogenase 2, NAD (mitochondrial)	protein-coding	1.32629188056194	1.63724422032928	0.784560773335563	1.40843048078466	1.22227589356205	1.8582164013412	0.787735412967869	0.775326510030682	-0.251275109097684	0.860545015601513	0.998431161219273
Merged-chr17-50666573-3	chr17	50666412	50666612	+	805.644409	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013880, intron 4 of 5)	MTC|LTR|ERVL-MaLR	-32169.0	NM_001297747	12228.0	Mm.392910	NM_009770	ENSMUSG00000022863	Btg3	ANA|tob5	B cell translocation gene 3	protein-coding	2.07907848924167	1.6057411555023	3.11371640429992	2.91734280885812	2.77930738019383	4.21097986207598	4.12759387831134	3.22126083530761	1.85736309744147	0.00967052757053507	0.106381714356308
Merged-chr3-127527772-4	chr3	127527694	127527894	+	946.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17295.0	NR_146435	110008574.0		NR_146435		LOC110008574	-	miR-302 host gene	ncRNA	4.61874881280165	4.39753265416359	4.56504607452545	4.86794770054244	3.7868153484792	3.54047456688559	4.59742551001426	3.68228511858711	-0.855654779551377	0.0442331203199804	0.301995749135141
Merged-chr1-184558365-4	chr1	184558283	184558483	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040472)	promoter-TSS (NR_040472)	-692.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	4.53705433533216	3.56511728617827	5.08892683713476	4.01035908396632	4.74638771362496	4.6566713320708	4.74935812946605	4.81565207352438	0.396353897562811	0.334015554471611	0.834204542579181
Merged-chr14-109289048-4	chr14	109288946	109289146	+	977.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16_Mm|LTR|ERVK	-374807.0	NM_199065	76965.0	Mm.257268	NM_199065	ENSMUSG00000075478	Slitrk1	3200001I04Rik	SLIT and NTRK-like family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-26578647-2	chr2	26578555	26578755	+	546.0	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-2401.0	NM_178444	353156.0	Mm.268933	NM_178444	ENSMUSG00000026921	Egfl7	VE-statin|Zneu1	EGF-like domain 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-16357787-2	chr2	16357670	16357870	+	552.5	f0_balb.idr|f1_c57bl6.idr	intron (NM_026162, intron 1 of 13)	intron (NM_026162, intron 1 of 13)	1466.0	NM_026162	67448.0	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5614697-2	chr17	5614597	5614797	+	734.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	122097.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-143017996-2	chr7	143017896	143018096	+	972.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_020286, intron 7 of 7)	intron (NM_020286, intron 7 of 7)	12337.0	NM_001128081	27027.0	Mm.28172	NM_020286	ENSMUSG00000000244	Tspan32	AW208513|Art-1|BB235973|D7Wsu37e|Phemx|Tssc6	tetraspanin 32	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-46348957-2	chr4	46348791	46348991	+	792.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4697.0	NM_183298	110805.0	Mm.354634	NM_183298	ENSMUSG00000070990	Foxe1	Titf2	forkhead box E1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-53700638-4	chr9	53700534	53700734	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175562, intron 1 of 1)	intron (NM_175562, intron 1 of 1)	5598.0	NM_175562	270160.0	Mm.290285	NM_175562	ENSMUSG00000055069	Rab39	C230094F14Rik|Rab39a	RAB39, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-123606270-3	chr1	123606172	123606372	+	885.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199021, intron 5 of 25)	intron (NM_199021, intron 5 of 25)	439287.0	NM_199021	269109.0	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	1.65753860946474	1.32878361291061	1.26419990351703	1.21067235203626	4.16680073217915	4.15445043875659	3.18735044068119	3.8061866314015	5.57695716605315	7.23896349031502e-07	4.972504806687e-05
Merged-chr8-82914677-3	chr8	82914579	82914779	+	718.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177378, intron 1 of 6)	ORR1E|LTR|ERVL-MaLR	51323.0	NM_177378	330812.0	Mm.491438	NM_177378	ENSMUSG00000047747	Rnf150	A630007N06Rik|C030044C12Rik|Greul5|mKIAA1214	ring finger protein 150	protein-coding	0.628780082199002	0.490601082414333	0.47964387099793	1.29613171586279	1.21644975241468	0.493048053108797	0.482075185327139	1.47793167531091	0.958932353011404	0.580066367996777	0.966168850054419
Merged-chr2-117092063-4	chr2	117091959	117092159	+	942.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29012.0	NM_001277256	114715.0	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80201223-3	chr7	80201125	80201325	+	865.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360135, intron 1 of 13)	intron (NM_001360135, intron 1 of 13)	2784.0	NM_001360135	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	1.23591303886711	1.78077595657155	1.15713686598566	1.76183668143133	1.09699173519066	1.67481469373651	1.16408548249457	1.56368202529542	-0.43244098596181	0.714356143204926	0.998431161219273
Merged-chr15-62055326-5	chr15	62055291	62055491	+	990.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132746, intron 1 of 6)	intron (NR_132746, intron 1 of 6)	16134.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-84148267-3	chr12	84148102	84148302	+	799.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001163502)	TTS (NM_001163502)	287.0	NM_027438	70481.0	Mm.444348	NM_027438	ENSMUSG00000054383	Pnma1	5730402C15Rik	paraneoplastic antigen MA1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-58801363-4	chr2	58801253	58801453	+	922.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46169.0	NM_029692	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-75706594-4	chr2	75706497	75706697	+	936.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1934.0	NM_010902	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	-1.26472950133113	-1.51255384623736	-1.37364594462016	-1.52972510195091	-1.54153971950802	-1.5105109001971	-1.51984705072522	-1.52833894650432	-1.8392127899658	0.598030108707587	1
Merged-chr6-38944127-2	chr6	38944027	38944227	+	815.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 1 of 12)	ID_B1|SINE|B4	25141.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-84645120-2	chr2	84645020	84645220	+	587.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007615, intron 1 of 19)	intron (NM_007615, intron 1 of 19)	4360.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-152100306-2	chr3	152100206	152100406	+	816.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016867, intron 5 of 5)	intron (NM_016867, intron 5 of 5)	65594.0	NM_016867	54120.0	Mm.97	NM_016867	ENSMUSG00000039131	Gipc2	2200002N01Rik|AU021850|Semcap2	GIPC PDZ domain containing family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-169774621-3	chr2	169774505	169774705	+	984.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080455, intron 1 of 1)	intron (NM_080455, intron 1 of 1)	140959.0	NM_080455	228911.0	Mm.315789	NM_080455	ENSMUSG00000047907	Tshz2	2900073F20Rik|B830045G17|Mtsh2|Sdccag33l|Tsh2|Zfp218|mKIAA4248|teashirt2	teashirt zinc finger family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-119404214-2	chr9	119404114	119404314	+	782.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007397, intron 1 of 9)	intron (NM_007397, intron 1 of 9)	2036.0	NM_001313757	11481.0	Mm.8940	NM_007397	ENSMUSG00000061393	Acvr2b	4930516B21Rik|ActRIIB	activin receptor IIB	protein-coding	-0.101664235149689	-0.0845625932128371	0.0945082944169726	0.557070749984948	-0.100591892006022	-0.0833058322003365	-0.0889145270601134	0.655531857031892	0.00600128184625209	0.997915829025459	1
Merged-chr9-35177970-3	chr9	35177866	35178066	+	840.694458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1979.0	NM_027030	69305.0	Mm.229110	NM_027030	ENSMUSG00000032040	Dcps	1700001E16Rik|AA408441	decapping enzyme, scavenger	protein-coding	3.93770718714599	3.45924319838901	4.13779426331023	4.38417342337778	3.60127991887443	3.48600036676063	4.43700384925538	4.71822518752277	0.193488849570039	0.691922395010472	0.997344206959699
Merged-chr18-66475900-4	chr18	66475816	66476016	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17312.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-69041380-2	chr16	69041280	69041480	+	730.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	759001.0	NR_130991	78110.0	Mm.211406	NR_130991	ENSMUSG00000107073	4930428D20Rik	Gm43265	RIKEN cDNA 4930428D20 gene	ncRNA	0.554528308706984	0.242475626052661	1.43305893326666	0.222690157441817	0.210114552200075	1.25091172117144	0.233864294102706	0.224222861732892	-0.624908368102506	0.747640079935121	0.998431161219273
Merged-chr2-117838604-4	chr2	117838509	117838709	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040631, intron 2 of 5)	intron (NR_040631, intron 2 of 5)	16681.0	NR_040631	73938.0	Mm.399107	NR_040631	ENSMUSG00000086221	4930412B13Rik	-	RIKEN cDNA 4930412B13 gene	ncRNA	3.28424295705506	3.30493737288292	3.29431411630848	3.79257892703589	3.3842244850084	3.77799454322868	3.21850640817753	3.81078421487698	0.202362991113195	0.704929212217834	0.998431161219273
Merged-chr2-25423749-2	chr2	25423649	25423849	+	633.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013524)	promoter-TSS (NM_013524)	55.0	NM_001177367	14347.0	Mm.1203	NM_013524	ENSMUSG00000036587	Fut7	AI853193|FTVII|Fuc-TVII|FucT-VII	fucosyltransferase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-120280265-2	chr2	120280253	120280453	+	895.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001024137, intron 6 of 19)	intron (NM_001024137, intron 6 of 19)	8716.0	NM_001024137	78390.0	Mm.330507	NM_001024137	ENSMUSG00000070719	Pla2g4d	2610311B01Rik|Pla2delta|cPLA2delta	phospholipase A2, group IVD	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153128907-2	chr2	153128807	153129007	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001172117, intron 3 of 12)	intron (NM_001172117, intron 3 of 12)	20439.0	NM_010407	15162.0	Mm.715	NM_010407	ENSMUSG00000003283	Hck	AI849071|Bmk	hemopoietic cell kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-5820440-3	chr18	5820339	5820539	+	976.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	227792.0	NM_001360981	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46793589-1	chr8	46793489	46793689	+	544.0	f1_c57bl6.idr	intron (NR_152560, intron 2 of 7)	intron (NR_152560, intron 2 of 7)	53844.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-94702987-4	chr8	94702881	94703081	+	792.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6739.0	NM_026385	67801.0	Mm.279977	NM_026385	ENSMUSG00000031775	Pllp	0610010I06Rik|AV001002|Plapi|Tm4sf11	plasma membrane proteolipid	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-95682815-4	chr9	95682725	95682925	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029620, intron 5 of 8)	intron (NM_029620, intron 5 of 8)	45197.0	NM_029620	76477.0	Mm.46016	NM_029620	ENSMUSG00000015354	Pcolce2	2400001O18Rik|Pcpe2	procollagen C-endopeptidase enhancer 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-6215960-4	chr17	6215886	6216086	+	885.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001103181, intron 8 of 13)	intron (NM_001103181, intron 8 of 13)	-40874.0	NM_001357884	77106.0	Mm.381893	NM_001033178	ENSMUSG00000038141	Tmem181a	5930418K15Rik|C76977|Gpr178|Tmem181|mKIAA1423	transmembrane protein 181A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-34178365-2	chr13	34178298	34178498	+	711.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001101430)	TTS (NM_001101430)	15434.0	NM_001110515	69666.0	Mm.24788	NM_001101430	ENSMUSG00000071451	Psmg4	PAC-4|mPAC4	proteasome (prosome, macropain) assembly chaperone 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101559638-3	chr7	101559468	101559668	+	797.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033804, intron 1 of 3)	B3A|SINE|B2	1297.0	NR_033804	11871.0	Mm.439746	NM_007490	ENSMUSG00000092517	Art2a-ps	ARTC2|Art2a|Ly92a|Rt-6|Rt6|Rt6-1	ADP-ribosyltransferase 2a, pseudogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45127641-2	chr7	45127583	45127783	+	905.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_001277)	promoter-TSS (NR_001277)	-220.0	NR_000002	27209.0		NR_000002	ENSMUSG00000065219	Snord32a	Rnu32|Rnu32a|U32|U32A	small nucleolar RNA, C/D box 32A	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-136791338-2	chr2	136791238	136791438	+	590.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME3A|LINE|L1	77652.0	NM_001355254	20614.0	Mm.45953	NM_011428	ENSMUSG00000027273	Snap25	Bdr|GENA70|SNAP-25|SUP|sp	synaptosomal-associated protein 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-121658438-1	chr5	121658338	121658538	+	626.0	f1_c57bl6.idr	intron (NM_028037, intron 1 of 20)	intron (NM_028037, intron 1 of 20)	2072.0	NM_028037	71985.0	Mm.45423	NM_028037	ENSMUSG00000029456	Acad10	2410021P16Rik	acyl-Coenzyme A dehydrogenase family, member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-184614925-4	chr1	184614808	184615008	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57217.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-89000129-1	chr11	89000029	89000229	+	1000.0	f0_balb.idr	intron (NM_009546, intron 1 of 8)	intron (NM_009546, intron 1 of 8)	726.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	3.97383216545131	3.80069090510333	4.05067736645859	4.54888088038781	4.33189156379969	4.45794107438666	4.01348817602547	4.1418673735482	0.158058680305644	0.709221346784519	0.998431161219273
Merged-chr6-37446198-2	chr6	37446098	37446298	+	668.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4050.0	NM_178661	208647.0	Mm.169929	NM_178661	ENSMUSG00000038648	Creb3l2	BBF2H7|C530025K05Rik|SCIRR69	cAMP responsive element binding protein 3-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-18583084-3	chr19	18582978	18583178	+	934.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017375, intron 9 of 9)	intron (NM_017375, intron 9 of 9)	48735.0	NM_017375	20409.0	Mm.172222	NM_017375	ENSMUSG00000024725	Ostf1	C78236|SH3P2|Sh3d3	osteoclast stimulating factor 1	protein-coding	-0.0974417888462968	-0.0721676544693418	-0.0803058555858213	-0.0866770474409656	0.374957975198684	1.18125006433649	0.144298062068604	-0.0855580403886907	4.31589022612251	0.0390224015985568	1
Merged-chr16-33151700-2	chr16	33151600	33151800	+	675.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33371.0	NM_176840	106326.0	Mm.486405	NM_176840	ENSMUSG00000022807	Osbpl11	9430097N02Rik|AI132306|AU019795|ORP-11	oxysterol binding protein-like 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24173069-2	chr17	24172963	24173163	+	883.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-3385.0	NM_001361531	11984.0	Mm.30155	NM_009729	ENSMUSG00000024121	Atp6v0c	Atp6c|Atp6c2|Atp6l|Atpl|Atpl-rs1|PL16|VATL|Vma3	ATPase, H+ transporting, lysosomal V0 subunit C	protein-coding	-0.589924257393835	0.0512528130196985	-0.581997798841292	-0.584976486421387	-0.589188015780982	-0.577269498907691	-0.105075952863887	-0.584456021748552	-0.538641386984227	0.849011586521361	1
Merged-chr3-61294988-4	chr3	61294869	61295069	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69538.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-25879419-2	chr18	25879319	25879519	+	567.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-125262.0	NM_001362334	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-78063341-4	chr10	78063233	78063433	+	984.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001284199, exon 6 of 6)	exon (NM_001284199, exon 6 of 6)	-6035.0	NM_015790	50723.0	Mm.17819	NM_015790	ENSMUSG00000000732	Icosl	AU044799|B7-H2|B7RP-1|B7h|BG071784|GI50|GL50|GL50-B|ICOS-L|Icoslg|LICOS|Ly115l|mKIAA0653	icos ligand	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-87405175-3	chr16	87405067	87405267	+	817.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081068, intron 17 of 29)	ORR1B1|LTR|ERVL-MaLR	27439.0	NM_001081068	78913.0	Mm.249005	NM_001081068	ENSMUSG00000052299	Ltn1	4930528H02Rik|AV266914|C87237|Listerin|Rnf160|Zfp294	listerin E3 ubiquitin protein ligase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52626043-2	chr13	52625943	52626143	+	920.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011518, intron 7 of 13)	intron (NM_011518, intron 7 of 13)	29161.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-122792598-3	chr10	122792506	122792706	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110218, intron 2 of 9)	B2_Mm2|SINE|B2	113291.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	3.89525028888392	2.83343910680213	2.96133296687856	3.42877342054849	2.64682662731334	2.39116760849326	2.98487623655602	2.04729268734179	-1.41687002384582	0.0400798927380899	0.285444333046064
Merged-chr1-84426809-4	chr1	84426698	84426898	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152915, intron 8 of 12)	intron (NM_152915, intron 8 of 12)	-142153.0	NM_001003948	98496.0	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4|P-CLI1	phosphotyrosine interaction domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88143258-4	chr3	88143167	88143367	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310593, intron 1 of 10)	intron (NM_001310593, intron 1 of 10)	895.0	NM_133665	17261.0	Mm.28184	NM_133665	ENSMUSG00000001419	Mef2d	C80750	myocyte enhancer factor 2D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59064124-4	chr15	59064030	59064230	+	854.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144800, intron 1 of 14)	intron (NM_144800, intron 1 of 14)	17896.0	NM_001146180	211401.0	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-8232260-3	chr17	8232168	8232368	+	830.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3775.0	NM_001190333	12458.0	Mm.8007	NM_009835	ENSMUSG00000040899	Ccr6	CC-CKR-6|CCR-6|Cmkbr6|KY411	chemokine (C-C motif) receptor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-112217951-2	chr12	112217851	112218051	+	615.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	71743.0	NM_001097621	668303.0	Mm.313104	NM_001097621	ENSMUSG00000021294	Kif26a	mKIAA1236	kinesin family member 26A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-5009034-2	chr6	5008931	5009131	+	774.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_181595, intron 2 of 15)	intron (NM_181595, intron 2 of 15)	105711.0	NM_181595	243725.0	Mm.332901	NM_181595	ENSMUSG00000032827	Ppp1r9a	2810430P21Rik|4930518N04Rik|5330407E15|A230094E16Rik|BB181831|NRB|mKIAA1222|neurabin-I	protein phosphatase 1, regulatory (inhibitor) subunit 9A	protein-coding	-0.281348875236172	-0.524363576036797	-0.527751379359668	-0.530355060354678	-0.534019264011448	-0.0430635032052865	-0.209132642191998	-0.529900841499244	1.65939740064673	0.533299791922848	1
Merged-chr8-123234895-1	chr8	123234795	123234995	+	784.0	f1_balb.idr	promoter-TSS (NR_045849)	promoter-TSS (NR_045849)	-196.0	NR_045849	71186.0	Mm.449984	NR_045849	ENSMUSG00000097637	4933417D19Rik	-	RIKEN cDNA 4933417D19 gene	ncRNA	0.330692669261831	0.402707763730444	0.7843599742203	0.361254749567839	0.181408864570306	0.202719525726968	0.195815772299129	1.02453425972791	-0.0555047254629455	0.976301318165729	1
Merged-chr3-121693213-3	chr3	121693108	121693308	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22445.0	NM_001033814	619318.0	Mm.371258	NM_001033814	ENSMUSG00000074248	4930432M17Rik	-	RIKEN cDNA 4930432M17 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-4452531-2	chr2	4452431	4452631	+	781.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 2 of 23)	intron (NM_001177843, intron 2 of 23)	51555.0	NM_001177843	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-11048160-4	chr19	11048001	11048201	+	934.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_102366, intron 2 of 2)	intron (NR_102366, intron 2 of 2)	2465.0	NR_102366	107350.0	Mm.6381	NM_001177351	ENSMUSG00000075010	AW112010	-	expressed sequence AW112010	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-63931780-4	chr17	63931673	63931873	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037997, intron 7 of 18)	Lx10|LINE|L1	-6199.0	NM_008000	14158.0	Mm.23039	NM_008000	ENSMUSG00000000127	Fer	AV082135|C330004K01Rik|Fert|Fert2	fer (fms/fps related) protein kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-146502244-4	chr6	146502149	146502349	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010586)	promoter-TSS (NM_010586)	-26.0	NM_019923	16439.0	Mm.7800	NM_010586	ENSMUSG00000030287	Itpr2	AI649341|InsP3R-2|InsP3R-5|Ip3r2|Itpr5|insP3R2	inositol 1,4,5-triphosphate receptor 2	protein-coding	2.81398913184201	2.79353882217287	2.38286761294259	3.06523833075503	3.65065317893744	3.18425827550939	3.70877337402603	3.33265340924743	1.19489446373294	0.0490243775364774	0.322423355127976
Merged-chr15-84631770-3	chr15	84631669	84631869	+	662.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31437.0	NM_001346662	109270.0	Mm.291372	NM_146061	ENSMUSG00000036106	Prr5	AU043908|Arhgap8|C030017C09Rik|C78947|Protor-1|Protor1	proline rich 5 (renal)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-63151933-5	chr11	63151840	63152040	+	992.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302255, intron 4 of 4)	intron (NM_001302255, intron 4 of 4)	19137.0	NM_001302260	18858.0	Mm.1237	NM_008885	ENSMUSG00000018217	Pmp22	22kDa|Gas-3|HNPP|TRE002|Tr|trembler	peripheral myelin protein 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-72235401-2	chr2	72235301	72235501	+	638.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355478, intron 21 of 26)	intron (NM_001355478, intron 21 of 26)	-50236.0	NM_023057	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-34339195-2	chr7	34339095	34339295	+	725.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER68|LTR|ERVL	50510.0	NM_001360654	67070.0	Mm.276503	NM_025948	ENSMUSG00000066568	Lsm14a	2700023B17Rik|AA407828|AU017544|Tral|mRAP55A	LSM14A mRNA processing body assembly factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-108371636-4	chr6	108371477	108371677	+	981.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 13 of 61)	intron (NM_010585, intron 13 of 61)	-118166.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-21441363-2	chr5	21441263	21441463	+	638.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177869, intron 4 of 7)	intron (NM_177869, intron 4 of 7)	16460.0	NM_177869	330050.0	Mm.40655	NM_177869	ENSMUSG00000047221	Fam185a	4631428I10|AI847670	family with sequence similarity 185, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-76150855-2	chr14	76150755	76150955	+	792.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39964.0	NM_013745	27275.0	Mm.21138	NM_013745	ENSMUSG00000022009	Nufip1	Nufip	nuclear fragile X mental retardation protein interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-34519101-2	chr5	34519001	34519201	+	604.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-5122.0	NM_139064	231130.0	Mm.28615	NM_139064	ENSMUSG00000059866	Tnip2	1810020H16Rik|ABIN-2|AI428870	TNFAIP3 interacting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89868595-2	chr3	89868495	89868695	+	823.25	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001310676)	TTS (NM_001310676)	37225.0	NM_172530	214547.0	Mm.225	NM_172530	ENSMUSG00000046280	She	9430022A14	src homology 2 domain-containing transforming protein E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-148806171-2	chr4	148806071	148806271	+	675.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027195, intron 1 of 15)	CpG	1779.0	NM_027195	69743.0	Mm.233879	NM_027195	ENSMUSG00000028977	Casz1	2410019P08Rik|AV096627|BC040081|Cst|D4Ertd432e	castor zinc finger 1	protein-coding	-0.539072095141396	-1.17607782048307	-1.18720726126045	-1.19634931528472	-1.20196491063698	-1.17366602423904	-1.18468779981884	-1.19471289198531	-2.68787187143179	0.435473844436726	1
Merged-chr1-185282579-1	chr1	185282479	185282679	+	562.0	f1_balb.idr	intron (NM_001163754, intron 33 of 34)	intron (NM_001163754, intron 33 of 34)	-30740.0	NR_029580	387189.0		NR_029580	ENSMUSG00000065581	Mir194-1	Mirn194|Mirn194-1|miR-194|mir-194-1	microRNA 194-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-121379284-7	chr14	121379153	121379353	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145465)	promoter-TSS (NM_145465)	-23.0	NM_145465	223255.0	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-140159507-2	chr2	140159407	140159607	+	855.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081090, intron 5 of 13)	intron (NM_001081090, intron 5 of 13)	11051.0	NM_001081090	66580.0	Mm.21228	NM_001081090	ENSMUSG00000045624	Esf1	2610101J03Rik|ABTAP|AW545818|C79684	ESF1 nucleolar pre-rRNA processing protein homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-4917914-2	chr2	4917814	4918014	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1082.0	NM_010726	16922.0	Mm.391704	NM_010726	ENSMUSG00000026664	Phyh	AI256161|AI265699|Lnap1|PAHX	phytanoyl-CoA hydroxylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81000976-2	chr15	81000876	81001076	+	815.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357669, intron 1 of 20)	PB1D9|SINE|Alu	23211.0	NM_134091	105835.0	Mm.274943	NM_134091	ENSMUSG00000042303	Sgsm3	1810012I01Rik|AI428557|BB175482|Cip85|R75178|RUSC3|Rutbc3	small G protein signaling modulator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-24425245-4	chr5	24425143	24425343	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009207)	promoter-TSS (NM_009207)	11.0	NM_009207	20535.0	Mm.4580	NM_009207	ENSMUSG00000028962	Slc4a2	Ae2|B3RP	solute carrier family 4 (anion exchanger), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-62937787-2	chr14	62937687	62937887	+	557.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175546, intron 6 of 11)	intron (NM_175546, intron 6 of 11)	46723.0	NM_001037751	432867.0	Mm.99387	NM_001037751	ENSMUSG00000075574	Defb48	Defb42|EG432867	defensin beta 48	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-24378695-1	chr1	24378595	24378795	+	794.0	f0_balb.idr	intron (NM_007733, intron 15 of 50)	intron (NM_007733, intron 15 of 50)	183492.0	NM_001290691	12839.0	Mm.154662	NM_007740	ENSMUSG00000026147	Col9a1	Col9a-1	collagen, type IX, alpha 1	protein-coding	1.2328809630624	0.901274205645159	1.93760534564869	0.856242371175469	1.05580235084562	2.51141824043685	1.14781143594207	2.33042127874199	1.71278803368919	0.173488265616542	0.640902961210202
Merged-chr5-112991405-4	chr5	112991299	112991499	+	994.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285806, intron 1 of 20)	intron (NM_001285806, intron 1 of 20)	24139.0	NM_001285806	320129.0	Mm.285619	NM_177078	ENSMUSG00000042249	Grk3	4833444A01Rik|AI851927|AW551196|Adrbk-2|Adrbk2|Bark-2	G protein-coupled receptor kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-24193508-4	chr16	24193407	24193607	+	959.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-110817.0	NR_155457	108168278.0	Mm.417246	NR_155457		Gm46545	-	predicted gene, 46545	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91545167-4	chr16	91545047	91545247	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Arthur1|DNA|hAT-Tip100	-1947.0	NM_008338	15980.0	Mm.249364	NM_008338	ENSMUSG00000022965	Ifngr2	Ifgr2|Ifgt	interferon gamma receptor 2	protein-coding	1.07611042546712	1.3951689547368	0.920753569977543	2.00977311799651	2.12851627286829	1.97661178649221	1.35759279761128	0.907825789000279	0.778907297567393	0.541966992878233	0.954866069207078
Merged-chr2-128703701-3	chr2	128703590	128703790	+	793.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 1 of 18)	Lx8|LINE|L1	4775.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35171707-2	chr17	35171607	35171807	+	755.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_019467, intron 6 of 7)	intron (NM_019467, intron 6 of 7)	4345.0	NM_019467	11629.0	Mm.10747	NM_019467	ENSMUSG00000024397	Aif1	AI607846|AIF-1|D17H6S50E|G1|Iba1	allograft inflammatory factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-120600493-3	chr5	120600391	120600591	+	802.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029408, exon 2 of 5)	exon (NM_029408, exon 2 of 5)	11468.0	NM_029408	75732.0	Mm.425285	NM_029408	ENSMUSG00000029601	Iqcd	4933433C09Rik|AI662646	IQ motif containing D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-76468847-4	chr10	76468730	76468930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019434)	promoter-TSS (NM_019434)	-141.0	NM_019434	54387.0	Mm.30098	NM_019434	ENSMUSG00000001150	Mcm3ap	GANP|mKIAA0572	minichromosome maintenance complex component 3 associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-87739291-2	chr6	87739216	87739416	+	683.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159697, intron 2 of 7)	intron (NM_001159697, intron 2 of 7)	8447.0	NM_001159697	58229.0	Mm.333229	NM_021418	ENSMUSG00000068263	Efcc1	Ccdc48	EF hand and coiled-coil domain containing 1	protein-coding	-1.84371485578039	-1.81332821174849	-1.82251738371298	-1.83006564316449	-1.84158176955426	-1.81133687985023	-1.5312619047181	-1.82871450833159	1.60090129203521	0.64914985597185	1
Merged-chr5-99570598-2	chr5	99570498	99570698	+	638.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 1 of 3)	intron (NR_030692, intron 1 of 3)	158462.0	NR_030692	319818.0	Mm.295233	NR_030692	ENSMUSG00000089809	A930011G23Rik	-	RIKEN cDNA A930011G23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-32236209-2	chr18	32236109	32236309	+	600.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011946, exon 17 of 17)	3' UTR (NM_011946, exon 17 of 17)	-4122.0	NM_133658	13872.0	Mm.282335	NM_133658	ENSMUSG00000024382	Ercc3	BTF2 p89|Ercc-3|XPB	excision repair cross-complementing rodent repair deficiency, complementation group 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-90356809-2	chr17	90356709	90356909	+	568.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346961, intron 2 of 5)	IMPB_01|Satellite|Satellite	99071.0	NM_001346958	18189.0	Mm.478418	NM_020252	ENSMUSG00000024109	Nrxn1	1700062G21Rik|9330127H16Rik|A230068P09Rik|mKIAA0578	neurexin I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-15729421-1	chr6	15729321	15729521	+	955.6666869999999	f0_balb.idr	intron (NM_175088, intron 2 of 4)	intron (NM_175088, intron 2 of 4)	8760.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-21735494-4	chr13	21735402	21735602	+	969.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_178210)	TTS (NM_178210)	468.0	NM_178210	319159.0		NM_178210	ENSMUSG00000067455	Hist1h4j	-	histone cluster 1, H4j	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-57717289-3	chr18	57717196	57717396	+	734.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029290, intron 6 of 6)	MLTR14|LTR|ERV1	62699.0	NR_152224	100503033.0	Mm.381112	NR_152224		Gm19519	-	predicted gene, 19519	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-15592327-3	chr16	15592229	15592429	+	846.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159351, intron 1 of 2)	B1F|SINE|Alu	2189.0	NM_001159351	70620.0	Mm.235407	NM_023585	ENSMUSG00000022674	Ube2v2	1110021H13Rik|4632410D19Rik|5730524P06Rik|6820402M05|AI848315|C81524|MMS2	ubiquitin-conjugating enzyme E2 variant 2	protein-coding	-0.479419157931528	-0.53289705489417	-0.550537797581377	-0.706810642305751	-0.583431895853309	-0.701946545897469	-0.546646015490536	-0.706485745499773	-0.961138080993705	0.698301842269684	1
Merged-chr4-9739078-1	chr4	9738978	9739178	+	901.0	f1_balb.idr	Intergenic	RLTR20B5_MM|LTR|ERVK	-31507.0	NR_030693	320152.0	Mm.159946	NR_030693		4930412C18Rik	5730591J02Rik	RIKEN cDNA 4930412C18 gene	ncRNA	-1.53362919331644	-1.50201671710775	-1.51157659084044	-1.08120497225282	-1.53141005593807	-1.49994505258991	-1.50941244497383	-1.51802371459528	-1.94474658522739	0.577200604274218	1
Merged-chr9-104710504-1	chr9	104710404	104710604	+	839.5	f0_balb.idr	intron (NM_028719, intron 2 of 15)	intron (NM_028719, intron 2 of 15)	141021.0	NM_028719	74020.0	Mm.326240	NM_028719	ENSMUSG00000032564	Cpne4	3632411M23Rik|4933406O10Rik	copine IV	protein-coding	1.66822803969843	1.00116159395455	0.981179118720818	1.51507760439844	1.57243374410624	2.39063172839573	1.71400564996231	1.52315090655446	1.65691947515934	0.163596871163262	0.626436785175582
Merged-chr13-35074264-2	chr13	35074164	35074364	+	633.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	-80120.0	NM_001110331	23986.0	Mm.491141	NM_011868	ENSMUSG00000021417	Eci2	Acbd2|Drs1|Hca88|Peci	enoyl-Coenzyme A delta isomerase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-126073465-3	chr2	126073368	126073568	+	751.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008008, intron 2 of 3)	intron (NM_008008, intron 2 of 3)	38810.0	NM_008008	14178.0	Mm.330557	NM_008008	ENSMUSG00000027208	Fgf7	Kgf	fibroblast growth factor 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3890404-2	chr19	3890320	3890520	+	862.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271496, intron 9 of 11)	intron (NM_001271496, intron 9 of 11)	14810.0	NM_016921	27060.0	Mm.271689	NM_016921	ENSMUSG00000001750	Tcirg1	ATP6N1C|ATP6a3|Atp6i|OC-116|OPTB1|Stv1|TIRC7|Vph1|oc	T cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 protein A3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-60819330-3	chr19	60819225	60819425	+	948.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026437, intron 3 of 8)	intron (NM_026437, intron 3 of 8)	7770.0	NM_001347464	67894.0	Mm.26148	NM_026437	ENSMUSG00000024993	Fam45a	1810055E12Rik	family with sequence similarity 45, member A	protein-coding	2.58534216892404	2.91658813899108	3.66767064334212	3.39410981694426	2.07481822517983	2.34684911908726	3.51580204768817	1.99809877530979	-0.968387089772224	0.198204681680685	0.681132262021631
Merged-chr4-136070159-4	chr4	136070062	136070262	+	948.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16791.0	NM_025919	67025.0	Mm.276856	NM_025919	ENSMUSG00000059291	Rpl11	2010203J19Rik	ribosomal protein L11	protein-coding	2.18643711110414	3.82963485416806	2.26406046231039	2.73440580258105	2.20741697929784	1.2557346829844	1.95714917819539	1.17116012758591	-2.52504200993159	0.00857258161113607	0.0975842828941277
Merged-chr3-60469490-4	chr3	60469400	60469600	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-3330.0	NM_001253713	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-95818873-2	chr10	95818773	95818973	+	630.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-121790.0	NM_001001932	216238.0	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-84923117-2	chr18	84923017	84923217	+	913.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11888.0	NM_015798	50764.0	Mm.28369	NM_015798	ENSMUSG00000034391	Fbxo15	AU019763|Fbx15|ecat3	F-box protein 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-106669513-4	chr14	106669413	106669613	+	964.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-182993.0	NR_045938	73631.0	Mm.48862	NR_045938	ENSMUSG00000099794	1700128A07Rik	-	RIKEN cDNA 1700128A07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-62195651-2	chr15	62195551	62195751	+	629.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_132746, intron 3 of 6)	intron (NR_132746, intron 3 of 6)	23800.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101903310-2	chr7	101903210	101903410	+	668.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081679, intron 1 of 3)	intron (NM_001081679, intron 1 of 3)	475.0	NM_001282088	791260.0	Mm.475469	NM_001081679	ENSMUSG00000078630	Tomt	Comt2|F930017I19Rik	transmembrane O-methyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95017127-2	chr3	95017027	95017227	+	803.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1670.0	NM_001357863	78266.0	Mm.389478	NM_030074	ENSMUSG00000019338	Zfp687	4931408L03Rik|Znf687|mKIAA1441	zinc finger protein 687	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-117033409-2	chr13	117033309	117033509	+	584.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	-7893.0	NM_001081009	52552.0	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-62847895-3	chr9	62847802	62848002	+	988.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033175, intron 5 of 6)	intron (NM_001033175, intron 5 of 6)	9115.0	NM_001033175	76524.0	Mm.283636	NM_001033175	ENSMUSG00000032245	Cln6	1810065L06Rik|AW743417|D9Bwg1455e|nclf	ceroid-lipofuscinosis, neuronal 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55564340-2	chr14	55564240	55564440	+	663.983337	f1_balb.idr|f1_c57bl6.idr	intron (NR_037572, intron 6 of 14)	intron (NR_037572, intron 6 of 14)	3417.0	NM_001199009	28199.0	Mm.11535	NM_133734	ENSMUSG00000022214	Dcaf11	0710008A13Rik|C76035|D14Ucla1|Dacf11|GLO14|Wdr23	DDB1 and CUL4 associated factor 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-117495012-4	chr5	117494898	117495098	+	856.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001312914, intron 1 of 19)	intron (NM_001312914, intron 1 of 19)	80996.0	NM_001312914	333050.0	Mm.437947	NM_001034873	ENSMUSG00000061578	Ksr2	-	kinase suppressor of ras 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-15912342-4	chr7	15912252	15912452	+	862.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10019.0	NM_009156	20364.0	Mm.42829	NM_009156	ENSMUSG00000041571	Selenow	Sepw1|selW	selenoprotein W	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-119300781-1	chr2	119300681	119300881	+	649.0	f1_c57bl6.idr	Intergenic	Intergenic	12039.0	NM_172269	228545.0	Mm.294761	NM_172269	ENSMUSG00000034216	Vps18	9930024E13Rik	VPS18 CORVET/HOPS core subunit	protein-coding	0.0434167756309831	-0.496267531085851	-0.499971334865586	-0.502823233414139	0.0546277025787766	-0.495431500287674	-0.499155146778299	-0.502325373264262	0.0419527451125213	0.988073760716967	1
Merged-chr3-126630266-4	chr3	126630188	126630388	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025438, intron 2 of 18)	L1ME2|LINE|L1	33337.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	4.9864020720409	5.51853104317827	4.67868597180449	5.45567329088588	5.75376701506979	6.15822091560014	5.89075451769378	5.90802689981509	0.831404173647906	0.00292912376950297	0.0447499494734676
Merged-chr4-62469587-2	chr4	62469487	62469687	+	592.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023597, intron 1 of 10)	intron (NM_023597, intron 1 of 10)	1312.0	NM_001355523	71354.0	Mm.155573	NM_023597	ENSMUSG00000028391	Wdr31	5430402I10Rik|spWD	WD repeat domain 31	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-25398923-4	chr12	25398835	25399035	+	930.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	269761.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	1.76075718576141	0.697596604947023	0.682714093574262	1.33199721745325	1.26091689829055	0.700904094718599	1.81026682454613	0.673049662011667	0.00194666373254948	0.999012320784103	0.999567728756964
Merged-chr7-80382590-1	chr7	80382490	80382690	+	627.0	f1_balb.idr	exon (NM_010194, exon 9 of 19)	exon (NM_010194, exon 9 of 19)	5356.0	NM_010194	14159.0	Mm.48757	NM_010194	ENSMUSG00000053158	Fes	AI586313|BB137047|FPS|c-fes	feline sarcoma oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167063145-4	chr2	167063033	167063233	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033196)	promoter-TSS (NM_001033196)	-118.0	NM_001033196	98999.0	Mm.297074	NM_001033196	ENSMUSG00000039501	Znfx1	AI481105|Astx3	zinc finger, NFX1-type containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-121394934-1	chr10	121394834	121395034	+	593.0	f1_balb.idr	intron (NM_029364, intron 13 of 13)	intron (NM_029364, intron 13 of 13)	29844.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85457270-2	chr12	85457170	85457370	+	749.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16620.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-113824100-4	chr2	113824009	113824209	+	758.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009162, intron 2 of 5)	intron (NM_009162, intron 2 of 5)	4982.0	NM_009162	20394.0	Mm.4836	NM_009162	ENSMUSG00000023236	Scg5	7B2|AI325031|Sgne-1|Sgne1	secretogranin V	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-57891129-2	chr15	57891029	57891229	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_024207, intron 1 of 7)	intron (NM_024207, intron 1 of 7)	1289.0	NM_024207	67819.0	Mm.289387	NM_024207	ENSMUSG00000022365	Derl1	1110021N07Rik|AI195141|AW551338|Derlin-1	Der1-like domain family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-17601122-4	chr17	17601009	17601209	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172827, intron 1 of 17)	B1F|SINE|Alu	23380.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	3.28386717948385	2.07189594133603	3.21761682212454	3.93284743087832	3.77535273074182	3.35510254528083	3.65514719886787	2.93284358011115	0.278669650183573	0.661460753824937	0.99099887335198
Merged-chr11-94073908-2	chr11	94073808	94074008	+	583.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025430, intron 5 of 25)	RSINE1|SINE|B4	29703.0	NM_001025429	70834.0	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-4355422-3	chr18	4355306	4355506	+	849.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040328, intron 2 of 3)	B1F2|SINE|Alu	1859.0	NR_040328	73915.0	Mm.482777	NR_040328		4833419F23Rik	-	RIKEN cDNA 4833419F23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-56709012-4	chr18	56708913	56709113	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010721, intron 1 of 10)	CpG	1200.0	NM_010721	16906.0	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-152262897-4	chr3	152262789	152262989	+	942.283325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199465, intron 1 of 12)	intron (NM_199465, intron 1 of 12)	2906.0	NM_001357206	68810.0	Mm.200188	NM_199465	ENSMUSG00000039103	Nexn	1110046H09Rik|AA553326|NELIN	nexilin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-9082690-4	chr19	9082581	9082781	+	994.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011681)	TTS (NM_011681)	5275.0	NM_011681	22287.0	Mm.2258	NM_011681	ENSMUSG00000024653	Scgb1a1	CC10|CC16|CCSP|PCB-BP|UG|UGB|Utg	secretoglobin, family 1A, member 1 (uteroglobin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-56181703-4	chr13	56181600	56181800	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2815.0	NM_001168615	212937.0	Mm.116697	NM_145976	ENSMUSG00000049625	Tifab	-	TRAF-interacting protein with forkhead-associated domain, family member B	protein-coding	3.09395558686024	3.49324067409525	3.72398147128371	3.54122140023633	4.36917188845602	3.7121938035389	4.72374262087078	3.38638974393298	0.965205390664888	0.0628500740749244	0.37268954962979
Merged-chr19-21377066-4	chr19	21376960	21377160	+	970.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	95601.0	NM_010266	14544.0	Mm.45054	NM_010266	ENSMUSG00000058624	Gda	AU015411|AW047581|GAH	guanine deaminase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-64668291-1	chr12	64668191	64668391	+	562.0	f1_c57bl6.idr	Intergenic	Lx|LINE|L1	-193393.0	NM_001163271	623046.0	Mm.189552	NM_001163271	ENSMUSG00000043060	Fscb	EG623046	fibrous sheath CABYR binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-38455783-1	chr18	38455683	38455883	+	608.0	f0_balb.idr	intron (NM_001355749, intron 5 of 7)	intron (NM_001355749, intron 5 of 7)	36876.0	NM_001355749	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65557185-4	chr9	65557082	65557282	+	768.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153119, intron 5 of 5)	intron (NM_153119, intron 5 of 5)	22905.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167537631-3	chr2	167537526	167537726	+	895.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011427)	promoter-TSS (NM_011427)	-569.0	NM_011427	20613.0	Mm.2093	NM_011427	ENSMUSG00000042821	Snai1	Sna|Sna1|Snail|Snail1	snail family zinc finger 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-142746948-4	chr6	142746858	142747058	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9728.0	NM_009908	12764.0	Mm.3820	NM_009908	ENSMUSG00000030282	Cmas	AW208911|CMPNeu5Ac|D6Bwg0250e	cytidine monophospho-N-acetylneuraminic acid synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-47734234-4	chr9	47734134	47734334	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	83974.0	NR_046048	100038460.0	Mm.447649	NR_046048		Gm10677	-	predicted gene 10677	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16728779-2	chr7	16728679	16728879	+	709.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR30|LTR|ERV1	6850.0	NM_011927	26368.0	Mm.27096	NM_011927	ENSMUSG00000007209	Ceacam9	AA410097|AW545709|Cea-5|Cea5|mmCGM8	carcinoembryonic antigen-related cell adhesion molecule 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-105301767-2	chr13	105301667	105301867	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	-7282.0	NM_001360891	71816.0	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-48045949-4	chr4	48045852	48046052	+	841.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015743, intron 1 of 7)	intron (NM_015743, intron 1 of 7)	647.0	NM_015743	18124.0	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-15754016-4	chr6	15753911	15754111	+	936.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175088, intron 3 of 4)	intron (NM_175088, intron 3 of 4)	33350.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71702211-10	chr8	71702064	71702264	+	864.156677	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028189)	promoter-TSS (NM_028189)	-364.0	NM_028189	72297.0	Mm.290837	NM_028189	ENSMUSG00000031803	B3gnt3	2210008L19Rik	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-83060045-2	chr18	83059945	83060145	+	715.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-139485.0	NR_033307	75853.0	Mm.420737	NR_033307		4930592I03Rik	-	RIKEN cDNA 4930592I03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-5774045-4	chr13	5773963	5774163	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	84029.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44849831-4	chr7	44849674	44849874	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253920)	promoter-TSS (NM_001253920)	75.0	NR_030488	735269.0		NR_030488	ENSMUSG00000076051	Mir707	Mirn707|mmu-mir-707	microRNA 707	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-84285203-3	chr17	84285104	84285304	+	672.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183021, intron 29 of 37)	intron (NM_183021, intron 29 of 37)	-97257.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-87655205-4	chr16	87655097	87655297	+	990.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43757.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	2.62847863585814	4.01129024784556	3.30808550346843	3.83607048576351	3.96080097433272	3.62584509291423	2.42571909289496	2.34179123619644	-0.389467717093	0.562139910645334	0.960362415684079
Merged-chr1-131464258-2	chr1	131464158	131464358	+	784.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081011, intron 2 of 22)	intron (NM_001081011, intron 2 of 22)	63103.0	NM_001081011	14270.0	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46518731-3	chr19	46518642	46518842	+	789.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17094.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101277399-3	chr15	101277246	101277446	+	877.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6955.0	NM_026566	68118.0	Mm.482360	NM_026566	ENSMUSG00000037204	Atg101	9430023L20Rik|AA407441|AU022967	autophagy related 101	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-145905767-3	chr3	145905663	145905863	+	733.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18499.0	NM_009740	12042.0	Mm.239141	NM_009740	ENSMUSG00000028191	Bcl10	AI132454|BCL-10|C81403|CARMEN|CIPER|CLAP|ME10|cE10	B cell leukemia/lymphoma 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-138341904-4	chr5	138341804	138342004	+	956.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61395.0	NM_016964	50878.0	Mm.285609	NM_016964	ENSMUSG00000036928	Stag3	SA-2	stromal antigen 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-27650637-2	chr7	27650537	27650737	+	560.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3287.0	NM_028417	73032.0	Mm.44095	NM_028417	ENSMUSG00000007944	Ttc9b	2900074C18Rik	tetratricopeptide repeat domain 9B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132941087-2	chr4	132941003	132941203	+	556.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18552.0	NM_001163792	230789.0	Mm.11473	NM_145553	ENSMUSG00000028878	Fam76a	-	family with sequence similarity 76, member A	protein-coding	0.557459919709812	0.386638634997713	0.177453041859483	0.345132550346445	1.12387017515636	0.391862213338135	0.178967068171213	0.173073264318196	1.05624131925601	0.572694136242204	1
Merged-chr1-62727270-2	chr1	62727170	62727370	+	635.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077404, intron 2 of 16)	intron (NM_001077404, intron 2 of 16)	23953.0	NM_001077407	18187.0	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-53206080-3	chr15	53205991	53206191	+	958.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	140092.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-17180908-4	chr11	17180805	17181005	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024459, intron 1 of 5)	intron (NM_024459, intron 1 of 5)	21607.0	NM_024459	19058.0	Mm.41840	NM_024459	ENSMUSG00000033953	Ppp3r1	CaNB1|Cnb1|MCIP1	protein phosphatase 3, regulatory subunit B, alpha isoform (calcineurin B, type I)	protein-coding	0.626266852602838	0.501396521574678	0.492892627352317	1.04161131004256	0.980951374842359	1.14799491938794	0.494772443200153	1.04896939753864	1.36035481164554	0.413629033557159	1
Merged-chr5-67304005-4	chr5	67303904	67304104	+	903.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2951.0	NM_178651	109108.0	Mm.234455	NM_178651	ENSMUSG00000029221	Slc30a9	2310024J23Rik|AL024256|GAC63|HUEL|znT-9	solute carrier family 30 (zinc transporter), member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-86593627-4	chr6	86593523	86593723	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	-34551.0	NM_026414	67855.0	Mm.183043	NM_026414	ENSMUSG00000033508	Asprv1	2300003P22Rik|AA986851|SASP|SASPase|Taps	aspartic peptidase, retroviral-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153296499-2	chr2	153296399	153296599	+	790.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008444, intron 1 of 8)	intron (NM_008444, intron 1 of 8)	5083.0	NM_008444	16569.0	Mm.315560	NM_008444	ENSMUSG00000027475	Kif3b	AI854312|AW549267|mKIAA0359	kinesin family member 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-12027810-2	chr13	12027710	12027910	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023868, intron 1 of 104)	intron (NM_023868, intron 1 of 104)	79135.0	NM_023868	20191.0	Mm.239871	NM_023868	ENSMUSG00000021313	Ryr2	9330127I20Rik|RYR-2	ryanodine receptor 2, cardiac	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-127379015-1	chr2	127378915	127379115	+	643.0	f1_balb.idr	Intergenic	MIRc|SINE|MIR	15729.0	NM_009633	11552.0	Mm.347390	NM_009633	ENSMUSG00000058620	Adra2b	Adra-2b|[a]2B|a2b-AR|alpha2-C2|alpha2B	adrenergic receptor, alpha 2b	protein-coding	1.121062627169	1.65407473880836	0.957178713628873	1.68640813066822	1.46856571608367	2.30018435152384	0.96271213289358	2.57441199120778	1.67466847006048	0.164077541382685	0.627609673169858
Merged-chr5-110343000-2	chr5	110342900	110343100	+	845.8333130000001	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153400)	promoter-TSS (NM_153400)	35.0	NM_153400	231602.0	Mm.55948	NM_153400	ENSMUSG00000029503	P2rx2	P2X2a|P2x2	purinergic receptor P2X, ligand-gated ion channel, 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-96977332-3	chr11	96977271	96977471	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030220, intron 1 of 6)	CpG	317.0	NM_030220	78912.0	Mm.491183	NM_030220	ENSMUSG00000018678	Sp2	4930480I16Rik|mKIAA0048	Sp2 transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128123307-6	chr2	128123134	128123334	+	737.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028765, exon 18 of 18)	3' UTR (NM_028765, exon 18 of 18)	-2804.0	NM_207681	12125.0	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	1.40420833803087	0.625508652998608	0.817967687318407	1.50394420856232	1.41943225648651	0.852399958429147	0.61653814887717	0.606550907014703	-0.911778504847196	0.563717550651728	0.960367595640396
Merged-chr7-116382975-2	chr7	116382875	116383075	+	649.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011083, intron 8 of 32)	B1F|SINE|Alu	-48785.0	NM_026533	68052.0	Mm.14798	NM_026533	ENSMUSG00000090862	Rps13	2700063M04Rik	ribosomal protein S13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-70971222-4	chr2	70971120	70971320	+	870.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145524, intron 7 of 9)	intron (NM_145524, intron 7 of 9)	47154.0	NM_001110512	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-125555668-4	chr7	125555568	125555768	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001008700, intron 1 of 10)	intron (NM_001008700, intron 1 of 10)	3386.0	NM_001008700	16190.0	Mm.233802	NM_010557	ENSMUSG00000030748	Il4ra	CD124|Il4r	interleukin 4 receptor, alpha	protein-coding	5.29955786801915	5.24377739910974	6.03257340251359	5.12843795533984	5.26474608661781	3.66615351275575	5.12304452120307	4.51396345067211	-0.810169904634075	0.0337591461600579	0.258647660043662
Merged-chr10-128525287-4	chr10	128525219	128525419	+	939.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011843, intron 1 of 30)	CpG	540.0	NM_011843	23943.0	Mm.66056	NM_011843	ENSMUSG00000025366	Esyt1	Fam62a|Mbc2|vp115	extended synaptotagmin-like protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-114083918-3	chr7	114083830	114084030	+	921.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025846, intron 1 of 5)	intron (NM_025846, intron 1 of 5)	33851.0	NM_025846	66922.0	Mm.276572	NM_025846	ENSMUSG00000055723	Rras2	2610016H24Rik|C86394|TC21	related RAS viral (r-ras) oncogene 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-33925478-2	chr2	33925378	33925578	+	789.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37532.0	NM_175184	72543.0	Mm.254914	NM_175184	ENSMUSG00000038740	Mvb12b	2610200O14Rik|2610528K11Rik|AI414895|Fam125b	multivesicular body subunit 12B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-84675178-4	chr12	84675132	84675332	+	910.31665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23575.0	NM_001033334	627191.0	Mm.152484	NM_001033334	ENSMUSG00000071234	Syndig1l	DSPC1|Gm261|SynDIG2|Tmem90a	synapse differentiation inducing 1 like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-46733987-2	chr13	46733887	46734087	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	tRNA-Ala-GCG|tRNA|tRNA	-6138.0	NM_175749	218210.0	Mm.255398	NM_175749	ENSMUSG00000021374	Nup153	B130015D15Rik|C88147	nucleoporin 153	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-84803234-3	chr12	84803136	84803336	+	871.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013589, intron 16 of 34)	MTC|LTR|ERVL-MaLR	29966.0	NM_028863	74316.0	Mm.25719	NM_028863	ENSMUSG00000021241	Isca2	0710001C05Rik|5730594E03Rik|Hbld1	iron-sulfur cluster assembly 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99155530-3	chr7	99155421	99155621	+	956.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026384, intron 7 of 7)	intron (NM_026384, intron 7 of 7)	-14377.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-3800127-3	chr7	3800018	3800218	+	644.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289428, intron 12 of 12)	intron (NM_001289428, intron 12 of 12)	44933.0	NM_011089	18725.0	Mm.482470	NM_011089	ENSMUSG00000089942	Pira2	6M23	paired-Ig-like receptor A2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-143039011-4	chr5	143038903	143039103	+	847.525024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359851, intron 12 of 15)	intron (NM_001359851, intron 12 of 15)	74017.0	NM_207110	108086.0	Mm.381440	NM_080561	ENSMUSG00000045078	Rnf216	2810055G22Rik|AI647468|AU019462|C86502|F830018F18Rik|TRIAD3|UIP83|Ubce7ip1	ring finger protein 216	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-132269415-4	chr2	132269327	132269527	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291040, intron 1 of 3)	intron (NM_001291040, intron 1 of 3)	6279.0	NM_138651	110911.0	Mm.284503	NM_138651	ENSMUSG00000058793	Cds2	5730450N06Rik|5730460C18Rik|AI854580|D2Wsu127e	CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-158340300-3	chr2	158340161	158340361	+	653.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21248.0	NR_015463	68108.0	Mm.119198	NR_015463		Snhg17	9430008C03Rik	small nucleolar RNA host gene 17	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-84617464-4	chr12	84617375	84617575	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008992)	promoter-TSS (NM_008992)	-9.0	NM_008992	19300.0	Mm.229109	NM_008992	ENSMUSG00000021240	Abcd4	P69r|P70R|Pxmp1l	ATP-binding cassette, sub-family D (ALD), member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-121370972-3	chr10	121370868	121371068	+	872.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029364, intron 1 of 13)	B3|SINE|B2	5878.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6983524-2	chr19	6983424	6983624	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011697, intron 6 of 6)	B1_Mur2|SINE|Alu	-3060.0	NM_001166368	14227.0	Mm.4234	NM_008020	ENSMUSG00000056629	Fkbp2	mFKBP13|mFKBP2	FK506 binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-62322863-4	chr4	62322759	62322959	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355385, intron 17 of 27)	ORR1E|LTR|ERVL-MaLR	31312.0	NM_001290518	20530.0	Mm.292539	NM_025286	ENSMUSG00000066152	Slc31a2	AI604396|CTR2	solute carrier family 31, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-22881212-1	chr8	22881112	22881312	+	695.0	f0_balb.idr	intron (NM_001081149, intron 3 of 17)	intron (NM_001081149, intron 3 of 17)	21673.0	NM_001081149	244349.0	Mm.182776	NM_001081149	ENSMUSG00000031540	Kat6a	1500036M03|9930021N24Rik|MOZ|Myst3|Zfp220	K(lysine) acetyltransferase 6A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-48608807-1	chr3	48608707	48608907	+	718.0	f1_c57bl6.idr	non-coding (NR_003617, exon 1 of 1)	non-coding (NR_003617, exon 1 of 1)	293.0	NR_003617	66332.0	Mm.46124	NM_025493		1700018B24Rik	-	enhancer of rudimentary homolog pseudogene	pseudo	-1.05427326193291	-1.03570194074565	-0.879154215749717	-1.05124488368308	-0.687671082709643	-1.03332322628081	-0.875031633807149	-1.05092502691648	1.58131202794897	0.597958077664382	1
Merged-chr2-130629360-3	chr2	130629244	130629444	+	769.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080562, intron 1 of 5)	intron (NM_080562, intron 1 of 5)	683.0	NM_198176	380601.0	Mm.27090	NM_198176	ENSMUSG00000079043	Fastkd5	C78212|mKIAA1792	FAST kinase domains 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-93887215-4	chr11	93887115	93887315	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346525, intron 2 of 17)	intron (NM_001346525, intron 2 of 17)	996.0	NM_134012	103537.0	Mm.210334	NM_134012	ENSMUSG00000059474	Mbtd1	AA408199|AI194990|hemp	mbt domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-4816785-2	chr7	4816713	4816913	+	588.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4473.0	NM_133777	77891.0	Mm.389787	NM_133777	ENSMUSG00000060860	Ube2s	0910001J09Rik|6720465F12Rik|AA409170|E2-EPF	ubiquitin-conjugating enzyme E2S	protein-coding	-0.605159523701947	-0.594116237171468	-0.597738223658067	0.0306133245632224	-0.604471279605959	-0.593299269534912	-0.596939695456833	-0.167618268272535	-0.704591710035489	0.805658358061801	1
Merged-chr6-146410398-4	chr6	146410282	146410482	+	948.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019923, intron 9 of 56)	intron (NM_019923, intron 9 of 56)	91841.0	NM_010586	16439.0	Mm.7800	NM_010586	ENSMUSG00000030287	Itpr2	AI649341|InsP3R-2|InsP3R-5|Ip3r2|Itpr5|insP3R2	inositol 1,4,5-triphosphate receptor 2	protein-coding	1.04141340097681	1.94493509117297	1.67414742883395	1.08372870369381	1.19813308930243	1.49439055617598	1.11551019189432	1.39619136588011	-0.707122869447613	0.55808108554904	0.960321604678676
Merged-chr12-54166495-1	chr12	54166395	54166595	+	604.0	f1_c57bl6.idr	Intergenic	Intergenic	37379.0	NM_028133	112407.0	Mm.133037	NM_028133	ENSMUSG00000035105	Egln3	2610021G09Rik|AI505553|AI648162|Hif-p4h-3|Phd3|SM-20	egl-9 family hypoxia-inducible factor 3	protein-coding	1.21769554926382	0.637743590671768	1.2413521495732	1.30090935712903	0.607907127366392	0.853270733301642	0.629705596050345	1.30943694190192	-1.10039127018314	0.484412304649394	0.931207887927275
Merged-chr9-70841567-1	chr9	70841467	70841667	+	566.0	f0_balb.idr	intron (NM_001324473, intron 1 of 8)	L1ME3|LINE|L1	93241.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	-1.70003445307235	-1.66995014428655	-1.82219692308314	-1.8296700802997	-1.84107162572744	-1.81112766086929	-1.82013739341899	-1.82833238873095	-1.35620376503822	0.700603325690936	1
Merged-chr12-80198802-3	chr12	80198775	80198975	+	697.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134156, intron 4 of 20)	intron (NM_134156, intron 4 of 20)	61496.0	NM_134156	109711.0	Mm.253564	NM_134156	ENSMUSG00000015143	Actn1	3110023F10Rik|Actn1a	actinin, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-134680519-2	chr1	134680419	134680619	+	792.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009307, intron 2 of 9)	intron (NM_009307, intron 2 of 9)	-28781.0	NM_001355726	20980.0	Mm.5102	NM_009307	ENSMUSG00000026452	Syt2	IP4BP|R74640|mKIAA4194|sytII	synaptotagmin II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-69421536-3	chr18	69421466	69421666	+	758.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 3 of 19)	intron (NM_001361128, intron 3 of 19)	75406.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-80793042-4	chr12	80792938	80793138	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001242419, intron 1 of 6)	intron (NM_001242419, intron 1 of 6)	2506.0	NM_001242419	217684.0	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-122196868-3	chr7	122196746	122196946	+	760.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-10615.0	NM_001316689	26918.0	Mm.20452	NM_012016	ENSMUSG00000030866	Ern2	Ern1|Ire1|Ire1b|ire1-beta|mIre1	endoplasmic reticulum (ER) to nucleus signalling 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-50955740-3	chr14	50955616	50955816	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001123371)	promoter-TSS (NM_001123371)	-425.0	NM_001123371	667034.0	Mm.482171	NM_001123371	ENSMUSG00000068417	Pnp2	-	purine-nucleoside phosphorylase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25751059-2	chr7	25750959	25751159	+	866.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360789, intron 1 of 14)	intron (NM_001360789, intron 1 of 14)	3700.0	NM_144922	232989.0	Mm.254223	NM_144922	ENSMUSG00000040725	Hnrnpul1	E130317O14Rik|E1B-AP5|E1BAP5|Hnrnpul|Hnrpul1	heterogeneous nuclear ribonucleoprotein U-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-89500126-3	chr7	89499986	89500186	+	722.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17500.0	NM_029614	76453.0	Mm.250438	NM_029614	ENSMUSG00000039405	Prss23	2310046G15Rik|4930479H08Rik|AI790574|Spuve	protease, serine 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-47073300-2	chr7	47073200	47073400	+	890.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9924.0	NR_106023	102465639.0		NR_106023	ENSMUSG00000098960	Mir7056	Gm27696|mmu-mir-7056	microRNA 7056	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-40527775-2	chr10	40527675	40527875	+	852.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42587.0	NM_027572	70840.0	Mm.332570	NM_027572	ENSMUSG00000019834	Slc22a16	4921504E14Rik|CT2|FLIPT2|OCT6|OKB1	solute carrier family 22 (organic cation transporter), member 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88149613-1	chr3	88149513	88149713	+	597.0	f0_balb.idr	intron (NM_001310593, intron 1 of 10)	intron (NM_001310593, intron 1 of 10)	7241.0	NM_133665	17261.0	Mm.28184	NM_133665	ENSMUSG00000001419	Mef2d	C80750	myocyte enhancer factor 2D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30722137-2	chr2	30722037	30722237	+	770.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_037272)	TTS (NR_037272)	927.0	NR_037272	100526499.0		NR_037272	ENSMUSG00000093091	Mir3089	mir-3089|mmu-mir-3089	microRNA 3089	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-69778866-3	chr2	69778769	69778969	+	663.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077684, intron 4 of 8)	intron (NM_001077684, intron 4 of 8)	10617.0	NM_001077684	75051.0	Mm.195726	NM_001077684	ENSMUSG00000070883	Ccdc173	4930525K21Rik|4930578N16Rik	coiled-coil domain containing 173	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-103368342-4	chr12	103368211	103368411	+	711.041687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8583.0	NR_033587	68149.0	Mm.127378	NM_026580	ENSMUSG00000021203	Otub2	2010015L18Rik|4930586I02Rik|AI413508|AW557219|OTB2|OTU2	OTU domain, ubiquitin aldehyde binding 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-5296193-3	chr18	5296088	5296288	+	828.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360447, intron 1 of 4)	intron (NM_001360447, intron 1 of 4)	38251.0	NM_178722	240186.0	Mm.118257	NM_178722	ENSMUSG00000050945	Zfp438	9430031G09|9430091M14Rik|B830013J05Rik	zinc finger protein 438	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-118095681-4	chr5	118095617	118095817	+	998.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172721, exon 6 of 11)	exon (NM_172721, exon 6 of 11)	59741.0	NM_172721	231672.0	Mm.221769	NM_172721	ENSMUSG00000032867	Fbxw8	4930438M06Rik|FBW6|FBW8|FBXO29|Fbx29	F-box and WD-40 domain protein 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-8738968-4	chr16	8738880	8739080	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001003918)	promoter-TSS (NM_001003918)	-638.0	NM_001003918	252870.0	Mm.295330	NM_001003918	ENSMUSG00000022710	Usp7	2210010O09Rik|AA409944|AA617399|AU019296|AW548146|C80752|Hausp	ubiquitin specific peptidase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171389016-4	chr1	171388979	171389179	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_027893)	TTS (NM_027893)	119.0	NM_001005508	226652.0	Mm.251048	NM_001005508	ENSMUSG00000048865	Arhgap30	6030405P05Rik|Gm102|mFLJ00267	Rho GTPase activating protein 30	protein-coding	1.94749579489321	1.64257565490066	2.29761049957494	1.70372902832166	1.3397719076776	1.65332245444911	2.0201854985059	1.9584026080817	-0.459235216888112	0.649744459094247	0.985422869512088
Merged-chr14-122058140-3	chr14	122058134	122058334	+	892.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23560.0	NM_001037744	223262.0	Mm.297637	NM_001037744	ENSMUSG00000071229	Timm8a2	-	translocase of inner mitochondrial membrane 8A2	protein-coding	0.655293647927234	0.162472701050689	0.648649404496308	0.149316709956503	1.13294686696791	0.164133937051135	0.156706647933186	0.1503241508603	0.380293208827672	0.855486199315506	1
Merged-chr8-104243746-2	chr8	104243646	104243846	+	662.666626	f1_balb.idr|f1_c57bl6.idr	intron (NR_045642, intron 2 of 8)	ID4|SINE|ID	4812.0	NR_045642	57813.0	Mm.183110	NM_021028	ENSMUSG00000035824	Tk2	AU024611|mt-TK	thymidine kinase 2, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-79219727-2	chr3	79219627	79219827	+	634.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045502, intron 1 of 2)	MTA_Mm|LTR|ERVL-MaLR	6808.0	NR_045502	70924.0	Mm.444622	NR_045502	ENSMUSG00000104585	4921511C10Rik	-	RIKEN cDNA 4921511C10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-52235802-2	chr1	52235702	52235902	+	632.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-2570.0	NM_001113383	14660.0	Mm.398608	NM_001081081	ENSMUSG00000026103	Gls	6330442B14|AI314027|B230365M23Rik	glutaminase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-80171233-2	chr17	80171133	80171333	+	653.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_176963, intron 4 of 6)	intron (NM_176963, intron 4 of 6)	36072.0	NM_001195486	225027.0	Mm.292016	NM_146083	ENSMUSG00000024097	Srsf7	35kDa|9430065L19Rik|9G8|NX-96|Sfrs7	serine/arginine-rich splicing factor 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56472992-4	chr17	56472895	56473095	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252455, intron 1 of 27)	intron (NM_001252455, intron 1 of 27)	3485.0	NM_001252455	19280.0	Mm.258771	NM_011218	ENSMUSG00000013236	Ptprs	AL022616|PTP|PTP-NU3|PTPNU-3|PTPsigma|Ptpt9|R-PTP-S|RPTPsigma	protein tyrosine phosphatase, receptor type, S	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-126429605-4	chr4	126429525	126429725	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153402)	promoter-TSS (NM_153402)	-83.0	NM_153402	214150.0	Mm.440915	NM_153402	ENSMUSG00000028842	Ago3	AW048688|C130014L07Rik|Eif2c3	argonaute RISC catalytic subunit 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-45439394-4	chr8	45439311	45439511	+	935.366699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28792.0	NM_126166	142980.0	Mm.33874	NM_126166	ENSMUSG00000031639	Tlr3	AI957183	toll-like receptor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-107674283-2	chr4	107674183	107674383	+	591.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9306.0	NR_151717	56296.0	Mm.141324	NM_019872	ENSMUSG00000028610	Dmrtb1	Dmrt6|Prp13	DMRT-like family B with proline-rich C-terminal, 1	protein-coding	0.564953142085331	0.438949208946615	0.430801210026868	1.25314447159072	0.816979374804688	0.440779811417889	0.914513600107282	0.874976425340024	0.204473314320177	0.904294952776301	1
Merged-chr1-39482397-4	chr1	39482338	39482538	+	918.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3683.0	NM_001357521	54610.0	Mm.387293	NM_018775	ENSMUSG00000003134	Tbc1d8	AD3|HBLP1|VRP	TBC1 domain family, member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27837321-2	chr17	27837221	27837421	+	680.1999509999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2766.0	NM_011432	20630.0	Mm.103949	NM_011432	ENSMUSG00000024217	Snrpc	Snrp1c|U1-C|U1C	U1 small nuclear ribonucleoprotein C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165075107-3	chr2	165075011	165075211	+	704.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15639.0	NR_033448	72211.0	Mm.482899	NR_033448	ENSMUSG00000078935	1700025C18Rik	-	RIKEN cDNA 1700025C18 gene	ncRNA	3.86875681686129	3.87691511999602	2.52743269330303	3.9573517417532	3.84852189863158	3.36961369833003	3.3588994228185	4.08113350975674	0.049271249142645	0.929087079119046	0.998431161219273
Merged-chr4-101654778-4	chr4	101654618	101654818	+	862.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175036, intron 2 of 3)	intron (NM_175036, intron 2 of 3)	6935.0	NM_175036	230514.0	Mm.4756	NM_175036	ENSMUSG00000035212	Leprot	LEPR|OB-RGRP|Obrgrp|VPS55	leptin receptor overlapping transcript	protein-coding	2.6716823310964	2.51934481151603	3.10652760585112	2.24418635354877	1.2898054927735	2.41103581834252	1.85207405245447	2.25599653954587	-1.4701225662164	0.0972988171325835	0.48466283197761
Merged-chr2-14232769-2	chr2	14232669	14232869	+	652.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008625, intron 1 of 29)	intron (NM_008625, intron 1 of 29)	3355.0	NM_008625	17533.0	Mm.2019	NM_008625	ENSMUSG00000026712	Mrc1	AW259686|CD206|MR	mannose receptor, C type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-58712686-4	chr1	58712613	58712813	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009805)	promoter-TSS (NM_009805)	-573.0	NM_207653	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139399142-2	chr5	139399042	139399242	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028469, intron 2 of 4)	intron (NM_028469, intron 2 of 4)	-7245.0	NM_177000	319772.0	Mm.440271	NM_177000	ENSMUSG00000044092	C130050O18Rik	-	RIKEN cDNA C130050O18 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-98357852-2	chr7	98357741	98357941	+	985.5	f0_balb.idr|f1_c57bl6.idr	intron (NM_001168541, intron 2 of 3)	intron (NM_001168541, intron 2 of 3)	3447.0	NM_001168540	244152.0	Mm.25317	NM_001024619	ENSMUSG00000049580	Tsku	9530051K01Rik|E2ig4|Lrrc54|Tsk	tsukushi, small leucine rich proteoglycan	protein-coding	-0.0980155869687769	-0.220151832815803	-0.224262647514466	0.27806958698958	-0.094170766823903	-0.219222860961358	-0.223357429235034	0.284686267235527	0.0311183153145615	0.989119696665418	1
Merged-chr11-115822745-2	chr11	115822645	115822845	+	560.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_029557, exon 11 of 11)	3' UTR (NM_029557, exon 11 of 11)	-1313.0	NM_145438	217325.0	Mm.290450	NM_145438	ENSMUSG00000020782	Llgl2	9130006H11Rik|Llglh2	LLGL2 scribble cell polarity complex component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-84896400-3	chr15	84896308	84896508	+	879.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR44C|LTR|ERVK	-27020.0	NM_016714	18141.0	Mm.28379	NM_016714	ENSMUSG00000016619	Nup50	1700030K07Rik|AI413123|Npap60	nucleoporin 50	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-73534253-1	chr7	73534153	73534353	+	542.0	f1_balb.idr	intron (NM_001081345, intron 2 of 38)	B3|SINE|B2	7493.0	NM_001081345	244059.0	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-56731700-4	chr19	56731617	56731817	+	790.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9345.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76658883-2	chr15	76658783	76658983	+	618.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358909)	promoter-TSS (NM_001358909)	853.0	NM_001276333	54151.0	Mm.247752	NM_019396	ENSMUSG00000053929	Cyhr1	1110031M01Rik|AU042374|Chrp	cysteine and histidine rich 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-57586828-2	chr8	57586728	57586928	+	721.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001167981, intron 1 of 11)	intron (NM_001167981, intron 1 of 11)	-64925.0	NR_040698	100502619.0	Mm.393851	NR_040698		AW046200	-	expressed sequence AW046200	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-17640952-4	chr6	17640861	17641061	+	860.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007604, intron 1 of 9)	intron (NM_007604, intron 1 of 9)	3951.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	1.06514530337758	0.885551773053418	0.583355811394564	0.418399053327782	1.07673292678738	0.429975306758935	0.424126018615363	0.419174296122088	-0.787526251914671	0.672564947680404	1
Merged-chr10-81404924-4	chr10	81404729	81404929	+	979.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008688, exon 8 of 10)	exon (NM_008688, exon 8 of 10)	-4746.0	NR_152732	102634174.0	Mm.392213	NR_152732	ENSMUSG00000085327	Gm16104	-	predicted gene 16104	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27910896-4	chr17	27910839	27911039	+	941.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181413, intron 1 of 24)	B4A|SINE|B4	1633.0	NM_181413	224650.0	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	0.47481437138252	0.792500338420258	0.146004839112015	0.14251429580315	0.137626512180953	0.713584765934402	0.147007484412476	0.143122197175528	-0.801887510608157	0.71160447175239	1
Merged-chr17-71301019-4	chr17	71300910	71301110	+	981.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357337, intron 2 of 7)	intron (NM_001357337, intron 2 of 7)	10001.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80595746-2	chr10	80595646	80595846	+	619.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TCTG)n|Simple_repeat|Simple_repeat	-5405.0	NM_145421	216169.0	Mm.29802	NM_145421	ENSMUSG00000003346	Abhd17a	1700013O15Rik|BC005632|D10Bwg1364e|Fam108a	abhydrolase domain containing 17A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-21288020-2	chr12	21287906	21288106	+	614.400024	f0_balb.idr|f1_balb.idr	intron (NM_018813, intron 1 of 17)	intron (NM_018813, intron 1 of 17)	1709.0	NM_018813	54451.0	Mm.356778	NM_018813	ENSMUSG00000054309	Cpsf3	-	cleavage and polyadenylation specificity factor 3	protein-coding	1.13449489839659	0.639798476288413	0.628957705642772	0.620503751988746	1.03759060140252	1.0387011347006	1.56752887719704	1.21812903204964	2.24824995807921	0.148062952301857	0.598403537954644
Merged-chr15-8512045-4	chr15	8511944	8512144	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-67581.0	NM_201232	71175.0	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	NIPBL cohesin loading factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-85164223-2	chr11	85164123	85164323	+	707.1999509999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MD3|LINE|L1	-6873.0	NM_028589	73634.0	Mm.48850	NM_028589	ENSMUSG00000018479	1700125H20Rik	-	RIKEN cDNA 1700125H20 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-105927210-3	chr11	105927120	105927320	+	784.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_181071, exon 26 of 26)	3' UTR (NM_181071, exon 26 of 26)	17267.0	NM_007805	13056.0	Mm.149403	NM_007805	ENSMUSG00000019590	Cyb561	-	cytochrome b-561	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-57606813-4	chr16	57606714	57606914	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025599)	promoter-TSS (NM_025599)	53.0	NM_025599	66497.0	Mm.425976	NM_025599	ENSMUSG00000022748	Cmss1	1110001A06Rik|2610528E23Rik|4930572F24Rik|AV099812|AV122629	cms small ribosomal subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-64330645-2	chr17	64330545	64330745	+	944.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025309, intron 1 of 9)	intron (NM_001025309, intron 1 of 9)	1238.0	NM_144859	224938.0	Mm.489681	NM_144859	ENSMUSG00000024083	Pja2	AI447901|AL022700|Neurodap1|mKIAA0438	praja ring finger ubiquitin ligase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-99205809-2	chr6	99205709	99205909	+	867.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001197321, intron 2 of 17)	intron (NM_001197321, intron 2 of 17)	60706.0	NM_001197321	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123059945-2	chr5	123059845	123060045	+	827.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-12929.0	NM_001347456	74890.0	Mm.141383	NM_029112	ENSMUSG00000029477	Morn3	4930438O03Rik	MORN repeat containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-95822661-2	chr11	95822561	95822761	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1839.0	NM_153104	237928.0	Mm.133075	NM_153104	ENSMUSG00000050860	Phospho1	D11Moh36|Phospo1	phosphatase, orphan 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-37257065-1	chr9	37256965	37257165	+	558.0	f1_c57bl6.idr	Intergenic	Intergenic	-1327.0	NM_001145960	56857.0	Mm.440037	NM_020258	ENSMUSG00000032122	Slc37a2	G3PP|Slc37a1|cI-2|ci2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	protein-coding	0.22379540868054	0.249613097322424	0.241247430808883	1.26749296299814	0.392306617025564	0.652124838017068	0.243099948500496	0.835636099300162	-0.271930626429959	0.886373039184011	1
Merged-chr16-32914217-4	chr16	32914082	32914282	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310674)	promoter-TSS (NM_001310674)	82.0	NM_001310672	70144.0	Mm.491178	NM_001081255	ENSMUSG00000022801	Lrch3	2210409B11Rik|AW215594|Gm1742	leucine-rich repeats and calponin homology (CH) domain containing 3	protein-coding	4.19919210620519	3.25977811373904	3.25845998066865	3.60504122211722	4.10931329218337	3.60410611127927	3.94372434942335	3.62325541651814	0.270638546943719	0.597284876729898	0.971902489067841
Merged-chr11-103098714-2	chr11	103098614	103098814	+	742.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_152813, intron 1 of 14)	MIR|SINE|MIR	2944.0	NM_152813	72469.0	Mm.264743	NM_152813	ENSMUSG00000020937	Plcd3	2610205J15Rik|mKIAA1964	phospholipase C, delta 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-10087676-3	chr3	10087607	10087807	+	795.955566	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045710)	promoter-TSS (NR_045710)	-570.0	NR_045710	100041480.0	Mm.455632	NR_045710	ENSMUSG00000049230	Gm9833	-	myelin basic protein expression factor 2, repressor pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-58978062-5	chr11	58977910	58978110	+	904.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290988)	promoter-TSS (NM_001290988)	-83.0	NM_001290988	94091.0	Mm.248049	NM_053168	ENSMUSG00000020455	Trim11	-	tripartite motif-containing 11	protein-coding	3.00153131277697	2.51615304710395	2.8063841500005	3.08207301364206	2.79725953824233	2.53417307336632	2.45233911213073	3.17073611866042	-0.186309515229062	0.786920383376423	0.998431161219273
Merged-chr11-119477794-1	chr11	119477694	119477894	+	625.0	f1_c57bl6.idr	intron (NR_153849, intron 2 of 3)	intron (NR_153849, intron 2 of 3)	13441.0	NR_153849	78439.0	Mm.440446	NR_153849	ENSMUSG00000109408	A930037H05Rik	Gm44935	RIKEN cDNA A930037H05 gene	ncRNA	-0.0457321803390925	-0.0129654589512066	-0.48958738299465	-0.492276416815346	-0.496061677923914	-0.485298835090262	-0.488817091350734	-0.332650757133579	-2.45607764732729	0.345189410840428	1
Merged-chr11-118293184-2	chr11	118293084	118293284	+	593.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2940.0	NM_001033528	72344.0	Mm.232293	NM_001033528	ENSMUSG00000033909	Usp36	2700002L06Rik|mKIAA1453	ubiquitin specific peptidase 36	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-15846160-4	chr6	15846070	15846270	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR33A_|LTR|ERVL	125509.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91525411-2	chr16	91525311	91525511	+	583.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	2133.0	NR_105786	102465190.0		NR_105786	ENSMUSG00000099308	Mir6367	Gm27467|mmu-mir-6367	microRNA 6367	ncRNA	-0.22543677670567	-0.354807040803377	-0.358976870842086	-0.362190545889847	0.0129909977941479	-0.353866395642538	-0.358057622140531	0.357760439611894	2.79813758014921	0.258851976501432	1
Merged-chr2-59182160-3	chr2	59182096	59182296	+	634.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 1 of 20)	intron (NM_175464, intron 1 of 20)	21346.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-46444104-4	chr2	46443997	46444197	+	710.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	747492.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-101075188-5	chr12	101075064	101075264	+	879.76001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160214, intron 1 of 14)	intron (NM_001160214, intron 1 of 14)	-7287.0	NR_038048	319760.0	Mm.440198	NM_176997	ENSMUSG00000097121	D130020L05Rik	9430007L23Rik	RIKEN cDNA D130020L05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-96407926-3	chr11	96407816	96408016	+	865.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42158.0	NM_008266	15407.0	Mm.890	NM_008266	ENSMUSG00000018973	Hoxb1	Hox-2.9	homeobox B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100571257-4	chr11	100571156	100571356	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028918, intron 11 of 11)	intron (NM_028918, intron 11 of 11)	-3683.0	NM_009923	12799.0	Mm.15711	NM_009923	ENSMUSG00000006782	Cnp	CNPase|Cnp-1|Cnp1	2',3'-cyclic nucleotide 3' phosphodiesterase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-46848395-2	chr14	46848289	46848489	+	848.5	f0_balb.idr|f1_balb.idr	intron (NM_026832, intron 4 of 5)	intron (NM_026832, intron 4 of 5)	16255.0	NM_001360455	68755.0	Mm.343809	NM_026832	ENSMUSG00000055128	Cgrrf1	1110038G02Rik|1810009H17Rik|CGR19	cell growth regulator with ring finger domain 1	protein-coding	0.919544701160878	1.95047297197388	0.996252559656309	1.65050825307936	2.07805274246236	3.16561364803203	2.48509801358944	0.973496420962397	2.2918872059776	0.0505761071348257	0.327805059560914
Merged-chr5-64864223-2	chr5	64864123	64864323	+	589.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60700.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5810481-4	chr19	5810383	5810583	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CTTG)n|Simple_repeat|Simple_repeat	-7811.0	NR_002847	72289.0	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24686710-2	chr17	24686610	24686810	+	887.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011522, intron 2 of 3)	intron (NM_011522, intron 2 of 3)	3239.0	NM_011522	20974.0	Mm.26032	NM_011522	ENSMUSG00000007021	Syngr3	-	synaptogyrin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-11785742-4	chr11	11785638	11785838	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23224.0	NM_021891	60530.0	Mm.236114	NM_021891	ENSMUSG00000035455	Fignl1	-	fidgetin-like 1	protein-coding	3.67598004610564	4.4785234485212	3.7749468853521	3.03696116651515	3.97250348331626	4.19409869862269	3.37789645288285	2.93028264455352	-0.182456995651307	0.743157507575436	0.998431161219273
Merged-chr13-99288092-4	chr13	99287976	99288176	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56602.0	NM_026873	68927.0	Mm.276502	NM_026873	ENSMUSG00000021650	Ptcd2	1190005P08Rik	pentatricopeptide repeat domain 2	protein-coding	4.76902054205101	5.01887287341436	4.47443715632939	4.24973663813093	4.73988608733651	4.6501502782065	3.67094818005898	4.37730213271718	-0.29465913892615	0.464182190685467	0.92226616093689
Merged-chr3-89449687-4	chr3	89449595	89449795	+	859.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_146131, exon 11 of 11)	3' UTR (NM_146131, exon 11 of 11)	-4846.0	NM_001310640	68603.0	Mm.34242	NM_026784	ENSMUSG00000027952	Pmvk	1110011E12Rik|2900002L22Rik|AV001327|PMK|PMKA|PMKASE	phosphomevalonate kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-105528232-3	chr5	105528168	105528368	+	965.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133897, intron 1 of 3)	intron (NM_133897, intron 1 of 3)	8797.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	0.260166647569116	0.255333751511633	-0.0927548608313434	-0.0964002481629113	0.039618815543596	0.517788924865017	-0.0917115939174654	-0.0957638585084494	0.234934991290471	0.914275451298951	1
Merged-chr9-70848186-2	chr9	70848086	70848286	+	841.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001324473, intron 1 of 8)	intron (NM_001324473, intron 1 of 8)	86622.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-6406586-4	chr1	6406478	6406678	+	996.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47247.0	NM_001195732	620393.0	Mm.388992	NM_001195732	ENSMUSG00000087247	Alkal1	EG620393|Fam150a	ALK and LTK ligand 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-80760667-4	chr12	80760558	80760758	+	789.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001008423)	promoter-TSS (NM_001008423)	57.0	NM_001008423	380768.0	Mm.29367	NM_001008423	ENSMUSG00000062961	Ccdc177	Gm1568	coiled-coil domain containing 177	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-32461248-1	chr5	32461148	32461348	+	543.0	f1_c57bl6.idr	intron (NM_172707, intron 1 of 7)	intron (NM_172707, intron 1 of 7)	2278.0	NM_172707	19046.0	Mm.241931	NM_172707	ENSMUSG00000014956	Ppp1cb	1200010B19	protein phosphatase 1, catalytic subunit, beta isoform	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-20436160-2	chr6	20436060	20436260	+	651.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3B|LINE|L1	-779949.0	NM_019697	16508.0	Mm.425316	NM_019697	ENSMUSG00000060882	Kcnd2	AI839615|AW555701|Kv4.2|R75121|mKIAA1044	potassium voltage-gated channel, Shal-related family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-123205528-3	chr7	123205428	123205628	+	853.388855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9338.0	NM_146198	233836.0	Mm.211838	NM_146198	ENSMUSG00000030769	Slc5a11	2010013B02Rik|Kst1|RKST2|SMIT2|Slc5a10	solute carrier family 5 (sodium/glucose cotransporter), member 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-117052570-2	chr2	117052470	117052670	+	688.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER3D-int|LTR|ERVK	-68501.0	NM_001277256	114715.0	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-83335360-4	chr17	83335259	83335459	+	931.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15572.0	NM_001114361	78798.0	Mm.295565	NM_199466	ENSMUSG00000032624	Eml4	4930443C24Rik|AI644019	echinoderm microtubule associated protein like 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-33698316-2	chr8	33698227	33698427	+	679.25	f0_c57.idr|f1_c57bl6.idr	TTS (NM_010344)	TTS (NM_010344)	-33587.0	NM_001167921	68153.0	Mm.286104	NM_026584	ENSMUSG00000031585	Gtf2e2	34kDa|AI462509|C330006J08Rik	general transcription factor II E, polypeptide 2 (beta subunit)	protein-coding	2.17222368040717	2.27054020977143	1.12345034331162	1.91944723449087	1.83384622502273	1.61102122751944	2.10597904434396	1.10835972358072	-0.63600882257892	0.573952392059665	0.964527909969019
Merged-chr1-59613984-4	chr1	59613890	59614090	+	991.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013771, intron 13 of 19)	intron (NM_001013771, intron 13 of 19)	56844.0	NM_009460	22218.0	Mm.362118	NM_009460	ENSMUSG00000026021	Sumo1	GMP1|PIC1|SENTRIN|SMT3|SMT3H3|SMTP3|SUMO-1|Smt3C|Ubl1	small ubiquitin-like modifier 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-145271335-2	chr4	145271235	145271435	+	659.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009401, intron 12 of 12)	B4A|SINE|B4	-24465.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126976944-2	chr7	126976844	126977044	+	848.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_026638, exon 2 of 6)	exon (NM_026638, exon 2 of 6)	1030.0	NM_001347656	52858.0	Mm.28219	NM_026638	ENSMUSG00000030682	Cdipt	9530042F15Rik|D7Bwg0575e|Pis|Pis1	CDP-diacylglycerol--inositol 3-phosphatidyltransferase (phosphatidylinositol synthase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44993810-2	chr7	44993710	44993910	+	726.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029410, intron 5 of 6)	intron (NM_029410, intron 5 of 6)	3769.0	NM_029410	75736.0	Mm.261006	NM_029410	ENSMUSG00000003190	Bcl2l12	2810475P17Rik|5430429M05Rik|Bcl-L12|Bcl2-L12	BCL2-like 12 (proline rich)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-113075249-4	chr12	113075142	113075342	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001291444)	TTS (NM_001291444)	740.0	NM_001361920	75671.0	Mm.23377	NM_029381	ENSMUSG00000012211	Tex22	1700028O09Rik|AV210422|Tep22	testis expressed gene 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5108213-2	chr19	5108113	5108313	+	877.333374	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045528, exon 16 of 16)	non-coding (NR_045528, exon 16 of 16)	-1217.0	NM_029576	76308.0	Mm.182563	NM_029576	ENSMUSG00000024870	Rab1b	1110011F09Rik	RAB1B, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-95038445-4	chr13	95038356	95038556	+	988.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172263, intron 15 of 19)	L1MA4|LINE|L1	62112.0	NM_172590	218460.0	Mm.33856	NM_172590	ENSMUSG00000042015	Wdr41	B830029I03Rik|MSTP048	WD repeat domain 41	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-104338102-2	chr8	104338002	104338202	+	870.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-2492.0	NM_024217	68119.0	Mm.390108	NM_024217	ENSMUSG00000031875	Cmtm3	9430096L06Rik|AI413895|BNAS2|Cklfsf3	CKLF-like MARVEL transmembrane domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-44272012-1	chr13	44271912	44272112	+	631.0	f0_balb.idr	Intergenic	RMER5|LTR|ERV1	-55525.0	NR_045088	100503592.0	Mm.184925	NR_045088	ENSMUSG00000113186	A330076C08Rik	-	RIKEN cDNA A330076C08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-29369691-2	chr19	29369591	29369791	+	676.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021893, intron 1 of 6)	intron (NM_021893, intron 1 of 6)	2253.0	NM_021893	60533.0	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-181127296-3	chr1	181127195	181127395	+	583.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026171, intron 9 of 22)	RSINE1|SINE|B4	16909.0	NM_026171	67459.0	Mm.263464	NM_026171	ENSMUSG00000026516	Nvl	1200009I24Rik	nuclear VCP-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101268078-2	chr15	101267978	101268178	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010444, intron 1 of 6)	intron (NM_010444, intron 1 of 6)	1232.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-57449783-3	chr17	57449711	57449911	+	885.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355722, intron 16 of 22)	intron (NM_001355722, intron 16 of 22)	91125.0	NM_010130	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-36237864-2	chr2	36237764	36237964	+	862.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008969, intron 4 of 10)	intron (NM_008969, intron 4 of 10)	7438.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-43833065-4	chr10	43832987	43833187	+	897.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_131055, exon 3 of 3)	non-coding (NR_131055, exon 3 of 3)	7180.0	NR_131055	71018.0	Mm.410796	NR_131055	ENSMUSG00000111342	4933404K13Rik	-	RIKEN cDNA 4933404K13 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-76876251-2	chr14	76876151	76876351	+	737.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	116120.0	NR_153763	73883.0	Mm.489041	NR_153763		4930431P22Rik	-	RIKEN cDNA 4930431P22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-70546371-4	chr4	70546279	70546479	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15-int|LTR|ERVL	-11451.0	NM_172694	230316.0	Mm.251188	NM_172694	ENSMUSG00000039270	Megf9	4933405H16Rik|9630025C07|Egfl5|mKIAA0818	multiple EGF-like-domains 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-61948209-4	chr9	61948124	61948324	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1425.0	NM_024245	71819.0	Mm.259374	NM_024245	ENSMUSG00000032254	Kif23	3110001D19Rik|C87313|CHO1|Knsl5|MKLP-1|MKLP1	kinesin family member 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-65884982-1	chr14	65884882	65885082	+	763.666687	f0_c57.idr	Intergenic	Intergenic	47680.0	NM_145944	67179.0	Mm.214576	NM_145944	ENSMUSG00000022035	Ccdc25	2610528H13Rik|NSrp70	coiled-coil domain containing 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-99354093-4	chr10	99353976	99354176	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	90845.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-44361051-1	chr3	44360951	44361151	+	597.0	f1_c57bl6.idr	Intergenic	L1Md_F|LINE|L1	1017209.0	NR_045172	72511.0	Mm.140700	NR_045172	ENSMUSG00000097040	2610316D01Rik	-	RIKEN cDNA 2610316D01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-62822454-2	chr16	62822354	62822554	+	677.833313	f1_balb.idr|f1_c57bl6.idr	exon (NM_026588, exon 2 of 2)	exon (NM_026588, exon 2 of 2)	7778.0	NM_026588	68159.0	Mm.386793	NM_026588	ENSMUSG00000047854	Stx19	A030009B12Rik	syntaxin 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-99364679-3	chr5	99364567	99364767	+	960.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-111740.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	1.7547285688393	2.77311123422069	2.55701780953523	2.59536978065298	3.16686469511743	3.65935535539897	1.41306685271179	2.22163240337343	0.777947903659698	0.374187987293904	0.867141279322472
Merged-chr3-127299595-4	chr3	127299494	127299694	+	978.508301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001327938, intron 1 of 47)	intron (NM_001327938, intron 1 of 47)	109464.0	NM_001327939	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	3.98705344178884	3.56555711321038	4.84509557394351	4.97191097233805	4.28078348699778	5.14068866408769	4.51706591095062	5.02600914286673	0.390932084611811	0.362597592130197	0.858187939866503
Merged-chr15-25227747-3	chr15	25227645	25227845	+	900.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	186019.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-66393084-4	chr8	66392958	66393158	+	943.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175188, intron 5 of 7)	intron (NM_175188, intron 5 of 7)	6757.0	NM_001166375	72925.0	Mm.380457	NM_175188	ENSMUSG00000036469	March1	2900024D24Rik|BB085186	membrane-associated ring finger (C3HC4) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-129786129-3	chr5	129786058	129786258	+	777.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133900, intron 1 of 7)	B1_Mur1|SINE|Alu	1095.0	NM_133900	100678.0	Mm.271784	NM_133900	ENSMUSG00000029446	Psph	AI480570|PSP|PSPase	phosphoserine phosphatase	protein-coding	2.15548936549813	1.22236868781167	1.61626893092905	1.86364023831295	1.99774444884241	1.67831237343057	2.5215875044561	1.87307680319859	0.806552554626496	0.431888455954514	0.904679012727573
Merged-chr6-145121770-4	chr6	145121661	145121861	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008511)	promoter-TSS (NM_008511)	22.0	NM_008511	16970.0	Mm.843	NM_008511	ENSMUSG00000030263	Lrmp	D6Int3|D6Int4|D6Int5|D6Int7|D6Int8|Jaw1	lymphoid-restricted membrane protein	protein-coding	6.06119853084667	5.56995066675668	5.86175847505876	6.20212612321295	6.05488003818453	6.2566596430425	6.39391744217412	5.98016876001263	0.248629090864006	0.290584750109833	0.79539026179457
Merged-chr3-95281832-4	chr3	95281727	95281927	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_173347, exon 1 of 8)	5' UTR (NM_173347, exon 1 of 8)	249.0	NM_173347	229589.0	Mm.14155	NM_173347	ENSMUSG00000015711	Prune1	9230112O05Rik|C130058A12|DRES-17|HTCD37|PRUNEM1|Prune|Prune-M1	prune exopolyphosphatase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-34796208-2	chr2	34796108	34796308	+	650.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145522, intron 2 of 7)	intron (NM_145522, intron 2 of 7)	3704.0	NM_145522	227746.0	Mm.158705	NM_145522	ENSMUSG00000070953	Rabepk	8430412M01Rik|9530020D24Rik|AV073337|C87311|Rab9p40	Rab9 effector protein with kelch motifs	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-82339757-2	chr15	82339657	82339857	+	571.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008669)	promoter-TSS (NM_008669)	-931.0	NM_008669	17939.0	Mm.20325	NM_008669	ENSMUSG00000022453	Naga	-	N-acetyl galactosaminidase, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-123019148-3	chr4	123019041	123019241	+	759.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151450, intron 1 of 9)	Lx8|LINE|L1	2548.0	NR_151450	66966.0	Mm.235030	NM_025873	ENSMUSG00000028653	Trit1	2310075G14Rik|AI314189|AI314635|AV099619|IPPT|IPT|MOD5	tRNA isopentenyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-38635811-2	chr6	38635711	38635911	+	710.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033171, intron 1 of 4)	MTD|LTR|ERVL-MaLR	1428.0	NM_001033171	74253.0	Mm.121859	NM_001033171	ENSMUSG00000071537	Klrg2	2310020F24Rik	killer cell lectin-like receptor subfamily G, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-31950699-2	chr16	31950599	31950799	+	684.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026554, intron 1 of 3)	intron (NM_026554, intron 1 of 3)	2153.0	NM_026554	68092.0	Mm.290027	NM_026554	ENSMUSG00000022774	Ncbp2	20kDa|5930413E18Rik|AA536802|AI843301|C79367	nuclear cap binding protein subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-58659442-4	chr18	58659370	58659570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025478)	promoter-TSS (NM_025478)	-12.0	NM_025478	66307.0	Mm.182574	NM_025478	ENSMUSG00000024601	Isoc1	2610034N03Rik	isochorismatase domain containing 1	protein-coding	4.41228433239139	4.29123846964199	4.41175426848661	3.4009108686076	4.37263307694218	3.8362475700184	3.21016592708754	3.10311788765559	-0.613603922114714	0.234915567772825	0.731086761108682
Merged-chr17-35136405-2	chr17	35136305	35136505	+	985.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252469, intron 2 of 23)	intron (NM_001252469, intron 2 of 23)	691.0	NM_001252469	224727.0	Mm.203962	NM_057171	ENSMUSG00000024392	Bag6	2410045D21Rik|AA408914|BAG-6|Bat3|D17H6S52E|G3|Scythe	BCL2-associated athanogene 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95523955-4	chr3	95523863	95524063	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2823.0	NM_021281	13040.0	Mm.3619	NM_021281	ENSMUSG00000038642	Ctss	Cats	cathepsin S	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-90240052-2	chr9	90239952	90240152	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 3 of 12)	MTE2a|LTR|ERVL-MaLR	30717.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95954435-4	chr3	95954441	95954641	+	856.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	YREP_Mm|Unknown|Unknown	25284.0	NM_023210	66471.0	Mm.218657	NM_023210	ENSMUSG00000015749	Anp32e	2810018A15Rik|AI047746|AI326868|CPD1|LANP-L|LANPL|mLANP-L	acidic (leucine-rich) nuclear phosphoprotein 32 family, member E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34036395-2	chr17	34036295	34036495	+	838.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001205216, exon 6 of 10)	exon (NM_001205216, exon 6 of 10)	-2743.0	NM_009926	12815.0	Mm.20230	NM_009926	ENSMUSG00000024330	Col11a2	-	collagen, type XI, alpha 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-112626240-2	chr12	112626140	112626340	+	789.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007421, intron 1 of 12)	intron (NM_007421, intron 1 of 12)	6193.0	NM_007421	11565.0	Mm.3440	NM_007421	ENSMUSG00000011148	Adssl1	AI528595|Adss|Adss1	adenylosuccinate synthetase like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-80772641-4	chr17	80772524	80772724	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44599.0	NM_001290345	225028.0	Mm.311948	NM_001081357	ENSMUSG00000024242	Map4k3	4833416M01Rik|4833416M07Rik|9530052P13Rik|Glk|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1	mitogen-activated protein kinase kinase kinase kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-58953988-3	chr11	58953848	58954048	+	825.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178218)	promoter-TSS (NM_178218)	564.0	NR_134309	382522.0	Mm.377898	NR_134309	ENSMUSG00000080712	Hist3h2bb-ps	4930534G10Rik|4933432H21|B2Hist3h2bb|Hist3h2bb|R75370	histone cluster 3, H2bb, pseudogene	pseudo	3.89510270950721	3.45861467686386	2.9090020978158	2.46703945417224	3.35803830680857	2.11676984651904	2.04038331812516	1.97150041627628	-1.31876097066588	0.0877720384950892	0.455488286273391
Merged-chr9-25540374-2	chr9	25540274	25540474	+	929.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 2 of 7)	intron (NM_026189, intron 2 of 7)	58777.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-21373517-4	chr19	21373394	21373594	+	837.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	99167.0	NM_010266	14544.0	Mm.45054	NM_010266	ENSMUSG00000058624	Gda	AU015411|AW047581|GAH	guanine deaminase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-113483359-4	chr6	113483244	113483444	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133930)	promoter-TSS (NM_133930)	-12.0	NM_133930	171508.0	Mm.41593	NM_133930	ENSMUSG00000030284	Creld1	AI843811|i11E7	cysteine-rich with EGF-like domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36132636-2	chr1	36132536	36132736	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TCTG)n|Simple_repeat|Simple_repeat	11677.0	NR_105862	102465540.0		NR_105862	ENSMUSG00000098752	Mir6897	Gm27652|mmu-mir-6897	microRNA 6897	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-134053384-4	chr1	134053292	134053492	+	845.283325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16138.0	NM_021355	14264.0	Mm.287146	NM_021355	ENSMUSG00000041559	Fmod	AI131919|AU041740|FM|SLRR2E	fibromodulin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-141000294-2	chr5	141000213	141000413	+	591.900024	f1_balb.idr|f1_c57bl6.idr	intron (NM_175362, intron 1 of 24)	intron (NM_175362, intron 1 of 24)	283.0	NM_175362	108723.0	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	-2.18375600819439	-2.15556918946382	-2.16409311609999	-2.17109492323169	-2.18177734563694	-2.01960173909294	-2.16216348594872	-2.16984160310277	0.759018020146679	0.829933115115583	1
Merged-chr5-77464989-3	chr5	77464888	77465088	+	819.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_131050)	promoter-TSS (NR_131050)	-500.0	NR_131050	69370.0	Mm.426881	NR_131050	ENSMUSG00000107232	1700017L05Rik	-	RIKEN cDNA 1700017L05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-50642409-4	chr2	50642310	50642510	+	989.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-267274.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-88287689-4	chr1	88287547	88287747	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10068.0	NM_198652	381280.0	Mm.384762	NM_198652	ENSMUSG00000044783	Hjurp	6430706D22Rik|A730008H23Rik|C330011F01Rik|Gm975|Mfleg1	Holliday junction recognition protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-173739331-4	chr2	173739231	173739431	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019806, intron 1 of 5)	B1F|SINE|Alu	1760.0	NM_019806	56491.0	Mm.260456	NM_019806	ENSMUSG00000054455	Vapb	AI225786|AI840687|AI848259|D2Abb2e|R75548|VAP33b|Vamp33b	vesicle-associated membrane protein, associated protein B and C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-155511127-2	chr4	155511027	155511227	+	694.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001160017, intron 1 of 10)	intron (NM_001160017, intron 1 of 10)	19766.0	NM_001160016	14688.0	Mm.2344	NM_008142	ENSMUSG00000029064	Gnb1	AA409223|C77571|Gnb-1	guanine nucleotide binding protein (G protein), beta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-23142091-4	chr19	23142003	23142203	+	994.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010638, exon 1 of 2)	exon (NM_010638, exon 1 of 2)	877.0	NM_010638	16601.0	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|Gm9971	Kruppel-like factor 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165858954-4	chr2	165858828	165859028	+	993.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252585)	promoter-TSS (NM_001252585)	-755.0	NM_001252585	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-62221257-4	chr11	62221168	62221368	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001281818, exon 15 of 15)	3' UTR (NM_001281818, exon 15 of 15)	-27716.0	NM_007413	11541.0	Mm.40740	NM_007413	ENSMUSG00000018500	Adora2b	A2BAR|A2BR|A2b|AA2BR|AI480866|AI605384	adenosine A2b receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118925444-4	chr9	118925328	118925528	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1108.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-96287615-4	chr15	96287660	96287860	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175251, exon 1 of 21)	exon (NM_175251, exon 1 of 21)	238.0	NM_175251	77044.0	Mm.17166	NM_175251	ENSMUSG00000033237	Arid2	1700124K17Rik|4432409D24Rik|BAF200|zipzap/p200	AT rich interactive domain 2 (ARID, RFX-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-46980927-1	chr13	46980827	46981027	+	577.0	f1_c57bl6.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	33923.0	NM_175340	105193.0	Mm.25593	NM_175340	ENSMUSG00000044231	Nhlrc1	AI505271|B230309E09Rik|EPM2B	NHL repeat containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-114818823-4	chr13	114818727	114818927	+	966.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113375, intron 1 of 5)	intron (NM_001113375, intron 1 of 5)	590.0	NM_001113374	17434.0	Mm.19027	NM_013826	ENSMUSG00000015536	Mocs2	AI415403	molybdenum cofactor synthesis 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96440824-2	chr3	96440724	96440924	+	555.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001256180, exon 3 of 5)	exon (NM_001256180, exon 3 of 5)	11482.0	NM_001256180	329716.0	Mm.275223	NM_183223	ENSMUSG00000046317	BC107364	D730018G16	cDNA sequence BC107364	protein-coding	-0.098551452118718	-0.330601638576784	-0.172164498828225	-0.336863159644278	-0.0925598295431003	-0.329799758796058	-0.333365445338649	0.160274783562205	1.04593680192342	0.658933971967012	1
Merged-chr11-87759720-4	chr11	87759613	87759813	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172449)	promoter-TSS (NM_172449)	-828.0	NM_172449	207777.0	Mm.342019	NM_172449	ENSMUSG00000034156	Tspoap1	Bzrap1|D230016K05|PRAX-1|mKIAA0612	TSPO associated protein 1	protein-coding	4.60347673575709	4.29281129692456	4.01887039502973	3.40056214625911	5.09171504742087	4.71215771997464	4.24720179219053	4.29059413380137	0.621060643381602	0.153298482535622	0.607957864740763
Merged-chr14-70994539-4	chr14	70994425	70994625	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	104418.0	NM_001302094	14586.0	Mm.32619	NM_008115	ENSMUSG00000022103	Gfra2	-	glial cell line derived neurotrophic factor family receptor alpha 2	protein-coding	-1.39239040096365	-1.50706362993767	-1.51637061241093	-1.52401564492204	-1.25712099376264	-1.5050467680107	-1.51426371558223	-1.52264718775774	0.640753741356348	0.855918148133186	1
Merged-chr7-128225361-3	chr7	128225248	128225448	+	922.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-12009.0	NM_146205	233912.0	Mm.475117	NM_146205	ENSMUSG00000042178	Armc5	AW049683|BC032200	armadillo repeat containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-39490434-1	chr10	39490334	39490534	+	855.0	f0_balb.idr	intron (NM_001122893, intron 3 of 13)	intron (NM_001122893, intron 3 of 13)	120635.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-170613424-4	chr1	170613325	170613525	+	835.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23576.0	NM_001109985	70729.0	Mm.409310	NM_027528	ENSMUSG00000038473	Nos1ap	6330408P19Rik|Capon	nitric oxide synthase 1 (neuronal) adaptor protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-34675095-4	chr6	34674996	34675196	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347100, intron 2 of 13)	ORR1E|LTR|ERVL-MaLR	-34348.0	NM_145575	109624.0	Mm.308134	NM_145575	ENSMUSG00000029761	Cald1	4833423D12Rik|AI195384|AV071549|AW536160|C920027I18Rik	caldesmon 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-109646691-4	chr7	109646589	109646789	+	876.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Charlie2a|DNA|hAT-Charlie	-29542.0	NM_029811	76954.0	Mm.252009	NM_029811	ENSMUSG00000031024	St5	2010004M01Rik|2610305K15Rik	suppression of tumorigenicity 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-89361871-4	chr6	89361845	89362045	+	947.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008881, intron 1 of 31)	CpG	668.0	NM_008881	18844.0	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-12413362-2	chr6	12413262	12413462	+	629.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164805, intron 7 of 26)	intron (NM_001164805, intron 7 of 26)	-303782.0	NR_003631	625347.0	Mm.389084	NM_001039041	ENSMUSG00000057223	Gm6578	EG625347	mitochondrial ribosomal protein L32 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-67831096-4	chr13	67831006	67831206	+	881.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045194)	promoter-TSS (NR_045194)	0.0	NM_001309374	102637366.0	Mm.121460	NM_001015506	ENSMUSG00000058246	Gm10037	EG328280|Rslcan24	predicted gene 10037	protein-coding	4.27560707757296	4.16257266462563	4.90188670830532	3.72570484023063	3.69110217838465	3.10931628735372	3.45268192659299	1.68478731323551	-1.63695632230826	0.00560305647668083	0.072704703654081
Merged-chr6-134110012-1	chr6	134109912	134110112	+	559.0	f1_c57bl6.idr	intron (NM_001303102, intron 2 of 8)	intron (NM_001303102, intron 2 of 8)	74312.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	-0.990219700220919	-1.06815903705124	-1.24279257567618	-1.25136460524387	-1.2591314987605	-1.06589762089026	-1.24043020744747	-1.24983021604965	-1.18324435021495	0.700911767692951	1
Merged-chr8-35159454-2	chr8	35159373	35159573	+	852.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-193783.0	NM_175091	21951.0	Mm.88364	NM_175091	ENSMUSG00000031529	Tnks	4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	protein-coding	3.485793506661	3.6722780045448	3.7692009014739	4.0081855782692	2.8462426828076	3.42756408789939	2.6853290410286	3.86842094546389	-0.688405452286058	0.219346366486366	0.710517864987671
Merged-chr12-85745935-4	chr12	85745834	85746034	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145447)	promoter-TSS (NM_145447)	-605.0	NM_145447	217721.0	Mm.301076	NM_145447	ENSMUSG00000034258	Flvcr2	CCT|Mfsd7c	feline leukemia virus subgroup C cellular receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-41845303-4	chr5	41845170	41845370	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310601)	promoter-TSS (NM_001310601)	-955.0	NM_001081422	665775.0	Mm.158726	NM_001081422	ENSMUSG00000061755	Bod1l	A230054D04Rik|AI853319|FAM44A|mKIAA1327	biorientation of chromosomes in cell division 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129742917-4	chr4	129742813	129743013	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045036)	promoter-TSS (NR_045036)	-610.0	NR_045036	20218.0	Mm.8256	NM_011317	ENSMUSG00000028790	Khdrbs1	Sam68|p62|p68	KH domain containing, RNA binding, signal transduction associated 1	protein-coding	5.19889357834557	4.501912561819	4.35574709920614	5.16635365604607	4.68617281019405	4.03174751979993	5.2672707330436	4.74405035571769	-0.137674679741182	0.723222958883013	0.998431161219273
Merged-chr17-21648938-2	chr17	21648838	21649038	+	650.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1673.0	NM_001166497	73229.0	Mm.296733	NM_001166497	ENSMUSG00000035868	Zfp983	3110052M02Rik|mszf57|mszf71	zinc finger protein 983	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-6412882-2	chr4	6412782	6412982	+	688.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010945, intron 23 of 30)	intron (NM_010945, intron 23 of 30)	41389.0	NM_010945	18201.0	Mm.3059	NM_010945	ENSMUSG00000028245	Nsmaf	AA959567|C630007J05|Fan	neutral sphingomyelinase (N-SMase) activation associated factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-67431016-4	chr17	67430928	67431128	+	979.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-76537.0	NM_001357625	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-91816229-3	chr12	91816115	91816315	+	908.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039089, intron 15 of 20)	intron (NM_001039089, intron 15 of 20)	-29779.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-136891022-7	chr4	136890843	136891043	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007574, intron 2 of 2)	intron (NM_007574, intron 2 of 2)	1971.0	NM_007574	12262.0	Mm.439732	NM_007574	ENSMUSG00000036896	C1qc	AI385742|C1qg|Ciqc	complement component 1, q subcomponent, C chain	protein-coding	4.2703571698482	3.57195648879121	3.25121327718333	3.25799795971845	3.70665482089816	4.24834195426571	3.27758469832311	3.88581668420643	0.217627289902225	0.681806756892994	0.995882295196263
Merged-chr15-102248849-2	chr15	102248749	102248949	+	708.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011244, intron 3 of 9)	intron (NM_011244, intron 3 of 9)	-2349.0	NM_001042727	19411.0	Mm.1273	NM_011244	ENSMUSG00000001288	Rarg	Nr1b3|RAR-gamma|RARD|RARgamma2	retinoic acid receptor, gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-32251793-1	chr4	32251693	32251893	+	641.0	f1_c57bl6.idr	Intergenic	Intergenic	-165642.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	1.22238218349552	1.41675609189445	0.623466074253769	1.08552889074544	0.908309546398922	1.31406658561156	0.625830638246644	0.616605165091358	-0.997138277354292	0.52121675859857	0.947836760490745
Merged-chr2-10034017-2	chr2	10033917	10034117	+	759.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_027748, intron 2 of 6)	intron (NM_027748, intron 2 of 6)	14592.0	NM_027748	209361.0	Mm.86343	NM_027748	ENSMUSG00000025782	Taf3	140kDa|4933439M23Rik|AW539625|TAF140|TAFII-140|TAFII140|mTAFII140	TATA-box binding protein associated factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-12116610-2	chr15	12116510	12116710	+	772.875	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1241.0	NM_011767	22763.0	Mm.273496	NM_011767	ENSMUSG00000022201	Zfr	C920030H05Rik	zinc finger RNA binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46488740-3	chr19	46488623	46488823	+	811.972229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_015752)	TTS (NM_015752)	-12925.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-50340827-3	chr6	50340720	50340920	+	985.944458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027881, intron 9 of 21)	MTC|LTR|ERVL-MaLR	42017.0	NM_027881	71720.0	Mm.44153	NM_027881	ENSMUSG00000029822	Osbpl3	1200014M06Rik|6720421I08Rik|A530055M08|ORP-3|ORP3|OSBP3	oxysterol binding protein-like 3	protein-coding	4.43383008794696	4.24061812822566	4.49575808795161	4.53765420633076	2.75069494919276	3.49592562590338	3.14681286663437	2.43747279876152	-2.06764211146466	3.84087307713115e-05	0.00140782469998227
Merged-chr7-25632859-4	chr7	25632736	25632936	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007533, intron 5 of 8)	MIRc|SINE|MIR	5212.0	NM_146184	232984.0	Mm.192369	NM_146184	ENSMUSG00000059479	B3gnt8	B3galt7|B7galt7|BC025206	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-121597420-4	chr3	121597320	121597520	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46065.0	NR_036456	100503044.0	Mm.65320	NM_176992	ENSMUSG00000044522	A730020M07Rik	-	RIKEN cDNA A730020M07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55918920-2	chr19	55918820	55919020	+	671.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001331147, exon 10 of 14)	exon (NM_001331147, exon 10 of 14)	23599.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-118158289-4	chr2	118158190	118158390	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46414.0	NM_001313914	21825.0	Mm.4159	NM_011580	ENSMUSG00000040152	Thbs1	TSP-1|TSP1|Thbs-1|tbsp1	thrombospondin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-104937475-6	chr14	104937339	104937539	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015593, intron 4 of 5)	intron (NR_015593, intron 4 of 5)	177237.0	NR_040628	100502987.0	Mm.124957	NR_040628		Gm17066	-	predicted gene 17066	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-78418142-4	chr17	78418046	78418246	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285946)	promoter-TSS (NM_001285946)	6.0	NM_001285949	225020.0	Mm.236835	NM_199448	ENSMUSG00000056121	Fez2	9030616F16|D17Ertd315e	fasciculation and elongation protein zeta 2 (zygin II)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-74208654-4	chr13	74208561	74208761	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177333)	promoter-TSS (NM_177333)	39.0	NM_177333	211446.0	Mm.261859	NM_177333	ENSMUSG00000034152	Exoc3	2810050O03Rik|E430013E20Rik|Sec6|Sec6l1	exocyst complex component 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91936660-2	chr2	91936560	91936760	+	791.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166597, intron 24 of 31)	intron (NM_001166597, intron 24 of 31)	-4363.0	NM_010784	17242.0	Mm.906	NM_010784	ENSMUSG00000027239	Mdk	MK|Mek	midkine	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27557050-14	chr17	27557085	27557285	+	931.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039356, intron 2 of 5)	CpG-6152	532.0	NM_001166477	111241.0	Mm.426212	NM_001166476	ENSMUSG00000078249	Hmga1b	Hmga1-rs1|Hmgi-rs1	high mobility group AT-hook 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-100485026-2	chr10	100484926	100485126	+	594.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033332, intron 1 of 12)	intron (NM_001033332, intron 1 of 12)	2321.0	NM_001033332	237500.0	Mm.296805	NM_001033332	ENSMUSG00000036676	Tmtc3	9130014E20Rik|B130008E12Rik|mSmile	transmembrane and tetratricopeptide repeat containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-65728211-1	chr17	65728111	65728311	+	545.0	f0_c57.idr	intron (NM_133685, intron 1 of 6)	intron (NM_133685, intron 1 of 6)	44541.0	NM_133685	106572.0	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-165618525-4	chr1	165618433	165618633	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083897, intron 1 of 5)	intron (NM_001083897, intron 1 of 5)	16008.0	NM_001001880	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-61577804-4	chr2	61577726	61577926	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011529)	promoter-TSS (NM_011529)	-760.0	NM_011529	21353.0	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-77449499-2	chr11	77449399	77449599	+	909.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001291190, exon 13 of 14)	exon (NM_001291190, exon 13 of 14)	-14414.0	NM_139129	216961.0	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-150596856-2	chr5	150596756	150596956	+	879.181824	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2331.0	NM_133898	100637.0	Mm.279932	NM_133898	ENSMUSG00000041132	N4bp2l1	2410024N18Rik|AI428195|B230342M21Rik	NEDD4 binding protein 2-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-99381062-4	chr12	99380963	99381163	+	843.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183186, intron 2 of 5)	Lx4A|LINE|L1	69011.0	NM_183186	71375.0	Mm.341972	NM_183186	ENSMUSG00000033713	Foxn3	5430426H20Rik|AA589593|AW556347|Ches1|Ches1l|HTLFL1	forkhead box N3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-128843238-4	chr6	128843149	128843349	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-16934.0	NM_030599	80782.0	Mm.6180	NM_030599	ENSMUSG00000079298	Klrb1b	Klrb1d|Ly55b|Ly55d|NKR-P1B|NKR-P1D|Nkrp1-b|Nkrp1b|Nkrp1d|ly-55b|ly-55d	killer cell lectin-like receptor subfamily B member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-8022195-3	chr10	8022070	8022270	+	730.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15-int|LTR|ERVL	-66047.0	NM_138667	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-77393692-3	chr16	77393591	77393791	+	830.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015543, intron 2 of 4)	intron (NR_015543, intron 2 of 4)	64363.0	NR_015543	77994.0	Mm.394688	NR_015543	ENSMUSG00000090386	Mir99ahg	2810055G20Rik|D730043B02Rik	Mir99a and Mirlet7c-1 host gene (non-protein coding)	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-138488765-2	chr3	138488675	138488875	+	814.0	f0_balb.idr|f1_balb.idr	intron (NM_175224, intron 1 of 10)	intron (NM_175224, intron 1 of 10)	607.0	NM_175224	75624.0	Mm.26833	NM_175224	ENSMUSG00000005813	Metap1	1700029C17Rik|AW047992|mKIAA0094	methionyl aminopeptidase 1	protein-coding	1.47803352977859	1.93780117162789	1.02244192752865	1.00596800644501	1.91844341306475	1.2988233631665	2.09480493351443	2.1131226271805	1.45944110049854	0.220691642344921	0.711835678575402
Merged-chr12-99622315-2	chr12	99622215	99622415	+	628.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1A|DNA|hAT-Charlie	5659.0	NR_045288	73457.0	Mm.383439	NR_045288	ENSMUSG00000100211	1700064M15Rik	-	RIKEN cDNA 1700064M15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99470905-3	chr15	99470655	99470855	+	800.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029236, exon 2 of 2)	exon (NM_029236, exon 2 of 2)	3975.0	NM_029236	75284.0	Mm.32826	NM_029236	ENSMUSG00000037525	Bcdin3d	4930556P03Rik|AV138748	BCDIN3 domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-99523472-4	chr6	99523355	99523555	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2462.0	NM_001347345	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129330758-4	chr2	129330670	129330870	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20798.0	NM_010554	16175.0	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	-0.226235296896101	0.595109062818019	-0.213198233288771	-0.218068504042706	-0.225013795898844	0.608384863201147	-0.211812549537951	-0.217215065379025	0.0395006580732415	0.987233647591244	1
Merged-chr2-164804998-4	chr2	164804879	164805079	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178375)	promoter-TSS (NM_178375)	-98.0	NM_133240	170789.0	Mm.277878	NM_133240	ENSMUSG00000017307	Acot8	PTE-2|Pte1	acyl-CoA thioesterase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-39308336-3	chr8	39308246	39308446	+	908.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_044988, intron 2 of 3)	intron (NR_044988, intron 2 of 3)	10366.0	NR_044988	621335.0	Mm.208080	NR_044988	ENSMUSG00000109827	Gm6213	EG621335	predicted gene 6213	ncRNA	0.906699418481786	1.0108792900813	0.978701454504412	0.952656505195462	2.45861642736431	2.71430146547583	2.53252593138885	2.26628964784815	5.84633599143352	6.84224965188024e-06	0.000336447997226472
Merged-chr6-42352591-2	chr6	42352491	42352691	+	797.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289618, intron 4 of 9)	intron (NM_001289618, intron 4 of 9)	2763.0	NM_001289618	22793.0	Mm.282303	NM_011777	ENSMUSG00000029860	Zyx	9530098H06Rik|R75157	zyxin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-33653871-2	chr5	33653771	33653971	+	838.75	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001356983, exon 4 of 4)	3' UTR (NM_001356983, exon 4 of 4)	-1297.0	NM_009193	20492.0	Mm.4172	NM_009193	ENSMUSG00000004642	Slbp	-	stem-loop binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-110996394-1	chr11	110996294	110996494	+	575.0	f1_c57bl6.idr	intron (NM_001252207, intron 2 of 2)	L2|LINE|L2	-1093.0	NM_001252209	16517.0	Mm.30176	NM_010604	ENSMUSG00000051497	Kcnj16	6430410F18Rik|AI132396|Kir5.1	potassium inwardly-rectifying channel, subfamily J, member 16	protein-coding	0.28185900127152	-0.106103898192059	-0.109504004104209	0.337776356127306	-0.115722018613214	-0.105331644532607	-0.108757709141364	0.253584323593112	-1.26088527824278	0.598227684581888	1
Merged-chr15-73734244-2	chr15	73734144	73734344	+	558.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166388, intron 1 of 5)	intron (NM_001166388, intron 1 of 5)	9314.0	NM_001166388	19245.0	Mm.390807	NM_008975	ENSMUSG00000059895	Ptp4a3	AV088979|Prl-3|pPtp4a3	protein tyrosine phosphatase 4a3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-103719353-4	chr5	103719248	103719448	+	846.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34814.0	NM_133919	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-52038034-4	chr2	52037952	52038152	+	977.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009398)	promoter-TSS (NM_009398)	-61.0	NM_009398	21930.0	Mm.3509	NM_009398	ENSMUSG00000053475	Tnfaip6	TSG-6|Tnfip6|Tsg6	tumor necrosis factor alpha induced protein 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36676220-2	chr18	36676120	36676320	+	621.166687	f1_balb.idr|f1_c57bl6.idr	exon (NM_001357512, exon 8 of 12)	exon (NM_001357512, exon 8 of 12)	-2995.0	NM_001360989	67843.0	Mm.273350	NM_026404	ENSMUSG00000033272	Slc35a4	2610030J16Rik	solute carrier family 35, member A4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-106071470-3	chr1	106071386	106071586	+	837.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	81080.0	NM_001122675	227449.0	Mm.210188	NM_001122675	ENSMUSG00000038866	Zcchc2	9930114B20Rik|AW212015	zinc finger, CCHC domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-34958316-3	chr2	34958251	34958451	+	653.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009421, intron 4 of 10)	intron (NM_009421, intron 4 of 10)	3421.0	NM_009421	22029.0	Mm.239514	NM_009421	ENSMUSG00000026875	Traf1	4732496E14Rik	TNF receptor-associated factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-111935311-2	chr13	111935211	111935411	+	734.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	67375.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-99229610-4	chr9	99229486	99229686	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001244762, exon 5 of 5)	exon (NM_001244762, exon 5 of 5)	7653.0	NM_001244762	623459.0	Mm.260891	NM_001244762	ENSMUSG00000096316	Faiml	EG623459|Gm6432	Fas apoptotic inhibitory molecule like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107582839-2	chr9	107582739	107582939	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_019750, exon 2 of 2)	5' UTR (NM_019750, exon 2 of 2)	1543.0	NM_178020	109685.0	Mm.447916	NM_178020	ENSMUSG00000036091	Hyal3	Hyl3	hyaluronoglucosaminidase 3	protein-coding	0.362662716824662	0.110005508226052	0.103951955607011	0.906548200347688	0.581401888965623	0.311114827077901	0.105288062722914	0.100091441803934	-0.86257942705801	0.671630657797571	1
Merged-chr7-17066575-4	chr7	17066446	17066646	+	846.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4119.0	NM_001162950	53417.0	Mm.135110	NM_016868	ENSMUSG00000004328	Hif3a	Ipas|MOP7|NEPAS|bHLHe17	hypoxia inducible factor 3, alpha subunit	protein-coding	0.165101205070312	-0.445298906925069	-0.449025620377738	-0.451893354420462	-0.455934591462918	-0.092868586079814	-0.448204611462919	-0.289574071164995	-0.535283726287055	0.836076214833661	1
Merged-chr10-34199280-2	chr10	34199180	34199380	+	880.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172508, intron 1 of 5)	intron (NM_172508, intron 1 of 5)	8271.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-60298444-4	chr2	60298343	60298543	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013825, intron 34 of 34)	ORR1D2|LTR|ERVL-MaLR	-13959.0	NM_001290660	66205.0	Mm.227281	NM_025422	ENSMUSG00000060703	Cd302	1110055L24Rik|AI159627	CD302 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19517859-3	chr7	19517802	19518002	+	838.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027116)	promoter-TSS (NM_027116)	-829.0	NM_027116	69547.0	Mm.77325	NM_027116	ENSMUSG00000060621	Nkpd1	2310015G09Rik	NTPase, KAP family P-loop domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-57878152-4	chr18	57878033	57878233	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009194)	promoter-TSS (NM_009194)	-545.0	NM_009194	20496.0	Mm.399997	NM_009194	ENSMUSG00000024597	Slc12a2	9330166H04Rik|Nkcc1|mBSC2|sy-ns	solute carrier family 12, member 2	protein-coding	1.30493752588368	0.249356714262496	0.238899644503108	0.230692674475987	1.38708692659495	0.251687022629548	0.465951465757231	0.232135473205694	0.334286715229915	0.865256750288494	1
Merged-chr19-41760780-4	chr19	41760578	41760778	+	843.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13717.0	NR_040320	100502871.0	Mm.394485	NR_040320		Gm19424	-	predicted gene, 19424	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3433408-2	chr12	3433311	3433511	+	683.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001270988, intron 1 of 11)	B1_Mm|SINE|Alu	6554.0	NM_172421	75302.0	Mm.120475	NM_172421	ENSMUSG00000037486	Asxl2	4930556B16Rik|mKIAA1685	additional sex combs like 2, transcriptional regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-6358956-2	chr4	6358856	6359056	+	809.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6724.0	NM_016807	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91413300-4	chr16	91413223	91413423	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008349, intron 3 of 6)	intron (NM_008349, intron 3 of 6)	7088.0	NM_008349	16155.0	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-11385983-4	chr16	11385901	11386101	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028964, intron 4 of 20)	intron (NM_028964, intron 4 of 20)	-19647.0	NM_001290148	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-118092346-3	chr10	118092298	118092498	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49389.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-32073550-2	chr5	32073437	32073637	+	620.5	f0_balb.idr|f1_c57bl6.idr	intron (NM_144541, intron 11 of 11)	intron (NM_144541, intron 11 of 11)	-62935.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	2.79784382458206	2.25364130492209	3.38968652763204	3.50299261522127	3.00170531175277	2.79693245270368	3.68808343155546	3.15266716222567	0.205932156481732	0.753622103192846	0.998431161219273
Merged-chr2-4551490-6	chr2	4551328	4551528	+	877.81665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 11 of 23)	MTEa|LTR|ERVL-MaLR	-8326.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-86781788-1	chr14	86781688	86781888	+	601.0	f0_balb.idr	intron (NM_019670, intron 25 of 27)	intron (NM_019670, intron 25 of 27)	359436.0	NM_019670	56419.0	Mm.440585	NM_019670	ENSMUSG00000022021	Diaph3	4930417P13Rik|Dia2|Diap3|Drf3|p134MDia2	diaphanous related formin 3	protein-coding	0.618639164942575	0.487235150899247	0.97640671876051	0.470235992944444	0.884625184973961	1.03440820208294	1.41003674523742	0.471540709933646	1.79031511505084	0.280498879568286	1
Merged-chr17-36837085-4	chr17	36836973	36837173	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286727)	promoter-TSS (NM_001286727)	-73.0	NM_001025599	22670.0	Mm.34587	NM_030698	ENSMUSG00000024457	Trim26	AI462198|Zfp173|Zfp1736	tripartite motif-containing 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-47274932-2	chr10	47274832	47275032	+	837.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4A|LINE|L1	1030183.0	NR_028276	108637.0		NR_028276	ENSMUSG00000096263	Snord14c	Gm23107|Rnu14|U14	small nucleolar RNA, C/D box 14C	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-164151882-2	chr1	164151782	164151982	+	723.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007976)	promoter-TSS (NM_007976)	47.0	NM_007976	14067.0	Mm.12900	NM_007976	ENSMUSG00000026579	F5	AI173222|Cf-5|Cf5	coagulation factor V	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-70328476-4	chr9	70328396	70328596	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181072, intron 9 of 27)	intron (NM_181072, intron 9 of 27)	77257.0	NR_049200	100885839.0		NR_049200	ENSMUSG00000093763	Mir5626	Gm25590|mir-5626|mmu-mir-5626	microRNA 5626	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-66334458-4	chr8	66334344	66334544	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175188, intron 4 of 7)	intron (NM_175188, intron 4 of 7)	-51857.0	NM_001166375	72925.0	Mm.380457	NM_175188	ENSMUSG00000036469	March1	2900024D24Rik|BB085186	membrane-associated ring finger (C3HC4) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-22306655-4	chr10	22306565	22306765	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015465)	promoter-TSS (NR_015465)	-55.0	NR_015465	606736.0	Mm.387042	NR_015465	ENSMUSG00000097352	C920009B18Rik	-	RIKEN cDNA C920009B18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-86877953-2	chr10	86877853	86878053	+	645.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_138673, intron 45 of 68)	(CA)n|Simple_repeat|Simple_repeat	98948.0	NM_175331	103466.0	Mm.200446	NM_175331	ENSMUSG00000054027	Nt5dc3	AU040402|AW540062|C630002B14Rik|TU12B1-TY	5'-nucleotidase domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-20964460-2	chr18	20964360	20964560	+	809.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026301, intron 1 of 5)	ID_B1|SINE|B4	19835.0	NM_026301	67664.0	Mm.45980	NM_026301	ENSMUSG00000033107	Rnf125	4930553F04Rik	ring finger protein 125	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-106054271-2	chr8	106054171	106054371	+	546.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_025518)	TTS (NM_025518)	-5332.0	NM_010901	18021.0	Mm.383185	NM_010901	ENSMUSG00000031902	Nfatc3	C80703|D8Ertd281e|NFAT4|NFATx	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64794535-2	chr5	64794435	64794635	+	707.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3C|LINE|L1	-8988.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-23963433-1	chr17	23963333	23963533	+	715.0	f1_c57bl6.idr	Intergenic	Intergenic	-8160.0	NM_001077421	638345.0	Mm.46428	NM_001077421	ENSMUSG00000024125	Sbpl	2310068J22Rik	spermine binding protein-like	protein-coding	-0.953721354153451	-1.41025554057125	-1.42001056191158	-1.42802362688808	-1.44024889148474	-1.40814158675276	-1.41780223890411	-1.42658929208844	-2.11310844444413	0.543369238581748	1
Merged-chr8-46109363-2	chr8	46109263	46109463	+	593.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_207213, intron 2 of 17)	intron (NM_207213, intron 2 of 17)	14783.0	NM_207213	102141.0	Mm.267258	NM_207213	ENSMUSG00000038291	Snx25	AI661919|Gm1699|Gm173|Sbbi31	sorting nexin 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-77596565-4	chr9	77596464	77596664	+	767.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40168.0	NM_172925	244923.0	Mm.138238	NM_172925	ENSMUSG00000044938	Klhl31	9830147P19Rik|D930047P17Rik|Kbtbd1	kelch-like 31	protein-coding	2.51209539098299	1.9630984758914	1.29625664755039	1.84909506861205	2.4631699261072	1.79968912691672	2.40795666372049	2.23291001003885	0.645849427182381	0.503176592677174	0.939787919021146
Merged-chr16-34300076-2	chr16	34299976	34300176	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177357, intron 9 of 59)	intron (NM_177357, intron 9 of 59)	213951.0	NM_001164268	545156.0	Mm.82274	NM_177357	ENSMUSG00000061751	Kalrn	2210407G14Rik|AV235988|DUET|E530005C20Rik|Gm539|Hapip|TRAD	kalirin, RhoGEF kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-113042836-3	chr12	113042725	113042925	+	621.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081170, intron 1 of 23)	L1MC|LINE|L1	28317.0	NM_001291444	217893.0	Mm.35754	NM_198165	ENSMUSG00000021143	Pacs2	6720425G15Rik|AW208651|AW489976|E230011J22|Pacs1l|mKIAA0602	phosphofurin acidic cluster sorting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-39737437-4	chr18	39737335	39737535	+	985.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36062.0	NM_011033	18459.0	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-56168140-3	chr9	56168041	56168241	+	755.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-7071.0	NM_019793	56434.0	Mm.28484	NM_019793	ENSMUSG00000032324	Tspan3	1700055K04Rik|TM4-A|Tm4sf8	tetraspanin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-25831517-4	chr15	25831408	25831608	+	894.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-11790.0	NM_001034851	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-136695093-4	chr1	136695052	136695252	+	868.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1059.0	NR_037986	100503474.0	Mm.428276	NR_037986		Platr22	Gm16880	pluripotency associated transcript 22	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-64531672-4	chr1	64531540	64531740	+	829.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1164.0	NM_009952	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-122559580-3	chr10	122559510	122559710	+	780.966675	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10281.0	NR_040616	319272.0	Mm.411763	NR_040616	ENSMUSG00000112095	A130077B15Rik	-	RIKEN cDNA A130077B15 gene	ncRNA	0.40335269271967	0.16076511489873	0.155018513399024	0.150587783353189	0.781838965957287	0.162061148436265	0.480636717119899	0.678085192820867	2.58215190835428	0.208302918099488	1
Merged-chr2-59231800-4	chr2	59231705	59231905	+	963.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 2 of 20)	intron (NM_175464, intron 2 of 20)	70955.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-106711631-4	chr7	106711524	106711724	+	921.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVB7_1-LTR_MM|LTR|ERVK	4721.0	NM_146598	258591.0	Mm.223117	NM_146598	ENSMUSG00000108948	Olfr695	MOR283-6	olfactory receptor 695	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-8228332-2	chr8	8228232	8228432	+	898.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	432441.0	NM_010111	13642.0	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-73393603-4	chr17	73393523	73393723	+	725.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033444, intron 1 of 22)	intron (NM_001033444, intron 1 of 22)	5673.0	NM_001033444	381122.0	Mm.81496	NM_001033444	ENSMUSG00000043705	Capn13	CANP 13|Gm943	calpain 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-134188133-2	chr4	134188086	134188286	+	670.5	f0_balb.idr|f1_balb.idr	Intergenic	ID_B1|SINE|B4	-1101.0	NM_144527	70012.0	Mm.26542	NM_144527	ENSMUSG00000037443	Cep85	2410030J07Rik|AI173272|AI173504|Ccdc21	centrosomal protein 85	protein-coding	1.81575380402588	1.44915290220203	1.54927993801146	1.62766026696429	1.55980133550243	1.05968454785497	1.56073555118872	1.63585679471156	-0.507188642963522	0.655790843392865	0.988505467120973
Merged-chr6-125128703-2	chr6	125128554	125128754	+	673.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346610, intron 37 of 38)	intron (NM_001346610, intron 37 of 38)	-3229.0	NM_138747	110109.0	Mm.29203	NM_138747	ENSMUSG00000038279	Nop2	120kDa|A530002O17|Nol1	NOP2 nucleolar protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-79633920-2	chr2	79633820	79634020	+	726.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1505.0	NM_080558	70599.0	Mm.272881	NM_080558	ENSMUSG00000027007	Ssfa2	5730488C15Rik|CS-1|CS1|KRAP|SPAG13|mKIAA1927	sperm specific antigen 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-59150885-2	chr4	59150785	59150985	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38665.0	NM_011673	22234.0	Mm.198803	NM_011673	ENSMUSG00000028381	Ugcg	AU043821|C80537|Epcs21|GlcT-1|Ugcgl	UDP-glucose ceramide glucosyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-29985237-4	chr6	29985138	29985338	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040263)	promoter-TSS (NR_040263)	-91.0	NR_040264	76419.0	Mm.84522	NR_040263	ENSMUSG00000045709	Smkr-ps	1700023L04Rik	smal lysine rich protein 1, pseudogene	ncRNA	5.7388820564777	4.9738513318693	5.466336166538	5.3629597778436	5.64730019419865	5.92312320654134	5.31839646228341	5.141765852171	0.132780049892498	0.654404101610969	0.987615146053888
Merged-chr9-62877590-2	chr9	62877490	62877690	+	841.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-15566.0	NR_003965	677044.0	Mm.422004	NR_003965	ENSMUSG00000074250	Gm10653	-	ribsomal protein S2 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70669353-4	chr11	70669258	70669458	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172561)	promoter-TSS (NM_172561)	58.0	NM_172561	216873.0	Mm.432524	NM_172561	ENSMUSG00000018287	Spag7	5730443G10|ACRP|FSA-1|Fsa1l	sperm associated antigen 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-57653525-5	chr8	57653381	57653581	+	890.8033449999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144731)	promoter-TSS (NM_144731)	-426.0	NM_144731	108150.0	Mm.62886	NM_144731	ENSMUSG00000031608	Galnt7	AI225872	polypeptide N-acetylgalactosaminyltransferase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28692656-2	chr17	28692556	28692756	+	724.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357724)	promoter-TSS (NM_001357724)	88.0	NM_001357724	26416.0	Mm.311337	NM_011951	ENSMUSG00000053436	Mapk14	CSBP2|Crk1|Csbp1|Mxi2|PRKM14|PRKM15|p38|p38-alpha|p38MAPK|p38a|p38alpha	mitogen-activated protein kinase 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-23812714-5	chr18	23812595	23812795	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153058, intron 1 of 6)	intron (NM_153058, intron 1 of 6)	8725.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-98788568-2	chr7	98788468	98788668	+	770.125	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46544.0	NM_001285794	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-71389643-4	chr2	71389534	71389734	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026115, intron 1 of 10)	intron (NM_026115, intron 1 of 10)	374.0	NM_026115	107435.0	Mm.272472	NM_026115	ENSMUSG00000027018	Hat1	2410071B14Rik|AA536933|Hat-1|KAT1	histone aminotransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-35587832-4	chr8	35587743	35587943	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081279)	promoter-TSS (NM_001081279)	45.0	NM_001081279	52065.0	Mm.103246	NM_001081279	ENSMUSG00000070056	Mfhas1	2310066G09Rik|D8Ertd91e	malignant fibrous histiocytoma amplified sequence 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71486766-3	chr17	71486662	71486862	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11419.0	NM_028887	74355.0	Mm.194450	NM_028887	ENSMUSG00000024054	Smchd1	4931400A14Rik|AW554188|MommeD1|mKIAA0650	SMC hinge domain containing 1	protein-coding	3.82211345821722	3.75349614168612	3.95856189316507	3.28432595864084	3.44815972637965	3.78029658325144	3.731464718956	1.99040710940478	-0.490963860481646	0.410638506009148	0.894256659801134
Merged-chr12-76521436-2	chr12	76521336	76521536	+	970.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	11776.0	NR_039597	100628604.0		NR_039597	ENSMUSG00000092738	Mir5135	mir-5135|mmu-mir-5135|mu-mir-5135	microRNA 5135	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-160060273-4	chr2	160060183	160060383	+	956.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43630.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-44551180-2	chr5	44551080	44551280	+	693.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359071, intron 2 of 7)	intron (NM_001359071, intron 2 of 7)	248566.0	NM_001347349	16826.0	Mm.25785	NM_010698	ENSMUSG00000039706	Ldb2	AI035351|AW146358|CLIM1|CLP-36|Ldb3	LIM domain binding 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-75502776-4	chr18	75502686	75502886	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201354, intron 9 of 11)	intron (NM_201354, intron 9 of 11)	-11859.0	NR_045879	100038353.0	Mm.440724	NR_045879	ENSMUSG00000097712	Gm10532	-	predicted gene 10532	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-98316075-4	chr12	98315988	98316188	+	686.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47453.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115073878-2	chr11	115073778	115073978	+	935.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11839.0	NM_172050	217306.0	Mm.222667	NM_172050	ENSMUSG00000048498	Cd300e	BC034097|CLM2|Cd300le|TREM5	CD300E molecule	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71490035-1	chr8	71489935	71490135	+	552.0	f1_balb.idr	intron (NM_032544, intron 3 of 8)	intron (NM_032544, intron 3 of 8)	1932.0	NM_032544	70359.0	Mm.142112	NM_032544	ENSMUSG00000007610	Gtpbp3	2410009F13Rik|AI607903	GTP binding protein 3	protein-coding	-1.84362945061595	-1.81329140012928	-1.67810947190254	-1.83000206547234	-1.84149977556685	-1.81130325271815	-1.67603257143677	-1.82865309133977	0.037684011990387	0.991491645451152	1
Merged-chr15-39907267-1	chr15	39907167	39907367	+	868.0	f0_balb.idr	intron (NM_172814, intron 1 of 6)	intron (NM_172814, intron 1 of 6)	36727.0	NM_001347036	239393.0	Mm.39874	NM_172814	ENSMUSG00000022305	Lrp12	AI848829|C820005L12Rik|LRP-12	low density lipoprotein-related protein 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-51313420-2	chr13	51313320	51313520	+	597.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-95198.0	NM_010101	13610.0	Mm.136736	NM_010101	ENSMUSG00000067586	S1pr3	AI132464|Edg3|Lpb3|S1p3	sphingosine-1-phosphate receptor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-43579940-2	chr13	43579840	43580040	+	858.625	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19749.0	NM_001081059	76137.0	Mm.426290	NM_001081059	ENSMUSG00000021371	Mcur1	6230416A05Rik|AU015498|AV136929|AW554392|C88263|Ccdc90a	mitochondrial calcium uniporter regulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31641108-4	chr14	31641023	31641223	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025295)	promoter-TSS (NM_025295)	66.0	NM_025295	26363.0	Mm.282679	NM_025295	ENSMUSG00000021900	Btd	-	biotinidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-58266639-4	chr9	58266543	58266743	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13479.0	NM_026942	69106.0	Mm.216502	NM_026942	ENSMUSG00000032333	Stoml1	1810015E19Rik|AI847431|SLP1|STORP|UNC24|WPB72	stomatin-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-28583047-6	chr2	28582935	28583135	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001290484, exon 1 of 12)	5' UTR (NM_001290484, exon 1 of 12)	244.0	NM_148928	70239.0	Mm.274120	NM_148928	ENSMUSG00000026816	Gtf3c5	2700084A09Rik|TFIIIC63|TFiiiC2-63	general transcription factor IIIC, polypeptide 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-33168871-2	chr14	33168771	33168971	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001146022, intron 1 of 58)	intron (NM_001146022, intron 1 of 58)	16195.0	NM_001146022	545030.0	Mm.318345	NM_001146022	ENSMUSG00000051506	Wdfy4	Gm18810	WD repeat and FYVE domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134922132-1	chr6	134922032	134922232	+	637.0	f1_c57bl6.idr	intron (NM_009875, intron 2 of 2)	intron (NM_009875, intron 2 of 2)	1731.0	NM_009875	12576.0	Mm.2958	NM_009875	ENSMUSG00000003031	Cdkn1b	AA408329|AI843786|Kip1|p27|p27Kip1	cyclin-dependent kinase inhibitor 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-84443917-1	chr1	84443817	84444017	+	835.0	f0_balb.idr	intron (NM_152915, intron 8 of 12)	intron (NM_152915, intron 8 of 12)	-159272.0	NM_001003948	98496.0	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4|P-CLI1	phosphotyrosine interaction domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-105815442-1	chr14	105815342	105815542	+	680.5	f0_balb.idr	Intergenic	Intergenic	81377.0	NM_011897	24064.0	Mm.89982	NM_011897	ENSMUSG00000022114	Spry2	sprouty2	sprouty RTK signaling antagonist 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55217785-4	chr19	55217675	55217875	+	958.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081076, intron 12 of 20)	intron (NM_001081076, intron 12 of 20)	23461.0	NM_001081076	73707.0	Mm.489987	NM_001081076	ENSMUSG00000055523	Gucy2g	2410077I05Rik|GC-G	guanylate cyclase 2g	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-152109352-2	chr2	152109252	152109452	+	560.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_029688, exon 2 of 2)	3' UTR (NM_029688, exon 2 of 2)	3828.0	NM_029688	76650.0	Mm.218639	NM_029688	ENSMUSG00000032802	Srxn1	1700127B04Rik|AI854065|AW488194|Npn3|Srx|Srx1|TX01	sulfiredoxin 1 homolog (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-50567057-2	chr9	50566957	50567157	+	633.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008360, intron 3 of 7)	B1_Mur2|SINE|Alu	-5789.0	NM_025687	66654.0	Mm.442255	NM_025687	ENSMUSG00000032065	Tex12	5730518K06Rik	testis expressed gene 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-34443479-2	chr1	34443379	34443579	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_178601, exon 4 of 9)	exon (NM_178601, exon 4 of 9)	3650.0	NM_178601	27993.0	Mm.289667	NM_178601	ENSMUSG00000026127	Imp4	AA409888|AV031295|D1Wsu40e	IMP4, U3 small nucleolar ribonucleoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-44923062-3	chr13	44922957	44923157	+	769.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025772, intron 9 of 9)	intron (NM_025772, intron 9 of 9)	79039.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-4258333-4	chr18	4258189	4258389	+	970.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC5|LINE|L1	92457.0	NM_026092	67328.0	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-78232427-4	chr16	78232325	78232525	+	934.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23029.0	NR_045698	100503619.0	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-4581674-2	chr7	4581574	4581774	+	572.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_207270, intron 5 of 19)	intron (NM_207270, intron 5 of 19)	22367.0	NM_207270	545902.0	Mm.188925	NM_207270	ENSMUSG00000035429	Ptprh	R-PTP-H|sap-1	protein tyrosine phosphatase, receptor type, H	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-51161343-2	chr6	51161243	51161443	+	806.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	108567.0	NR_029719	387166.0		NR_029719	ENSMUSG00000065505	Mir148a	Mirn148|Mirn148a|mir-148a	microRNA 148a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-69223320-4	chr17	69223228	69223428	+	867.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355736, intron 3 of 21)	intron (NM_001355736, intron 3 of 21)	53878.0	NR_045428	69750.0	Mm.439063	NR_045428	ENSMUSG00000100572	2410021H03Rik	-	RIKEN cDNA 2410021H03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-13154835-2	chr8	13154735	13154935	+	900.8333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4326.0	NM_001317353	16783.0	Mm.16716	NM_010684	ENSMUSG00000031447	Lamp1	CD107a|LGP-120|LGP-A|Lamp-1|P2B|Perk	lysosomal-associated membrane protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-43584969-1	chr19	43584869	43585069	+	542.0	f0_balb.idr	Intergenic	Intergenic	-27356.0	NM_008699	18089.0	Mm.56994	NM_008699	ENSMUSG00000044220	Nkx2-3	Nkx-2.3|Nkx2.3|tinman	NK2 homeobox 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-6792294-2	chr4	6792194	6792394	+	882.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_145711, intron 3 of 8)	intron (NM_145711, intron 3 of 8)	198429.0	NM_145711	252838.0	Mm.435828	NM_145711	ENSMUSG00000041272	Tox	1700007F02Rik	thymocyte selection-associated high mobility group box	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-154837405-2	chr4	154837310	154837510	+	739.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18790.0	NM_172878	242800.0	Mm.72944	NM_172878	ENSMUSG00000046637	Ttc34	4932418L02|B230396O12Rik	tetratricopeptide repeat domain 34	protein-coding	0.476435506651442	0.326683491903036	0.306681779449057	0.143325979297817	0.575109249957356	0.331186716815236	0.449488778666215	0.143970353915126	0.522582842687394	0.775974293357193	1
Merged-chr18-5141230-2	chr18	5141130	5141330	+	710.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24501.0	NR_153824	102637682.0	Mm.451914	NR_153824		Gm26682	Gm38715	predicted gene, 26682	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-14602102-4	chr14	14602003	14602203	+	820.049988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-100922.0	NM_001360505	218756.0	Mm.258893	NM_001033270	ENSMUSG00000021733	Slc4a7	E430014N10Rik|NBC3|NBCn1|NBCn1-G|Tg(Thy1-SNCA)12Mjff	solute carrier family 4, sodium bicarbonate cotransporter, member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24676269-5	chr17	24675980	24676180	+	758.866638	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001348231, intron 1 of 11)	intron (NM_001348231, intron 1 of 11)	6393.0	NM_183149	213753.0	Mm.219581	NM_183149	ENSMUSG00000041130	Zfp598	BC023040|Ntrap|Znf598	zinc finger protein 598	protein-coding	0.0287326179918687	0.689981245034269	0.520123998806927	0.0369180834207311	0.0299536014080451	0.701523945598155	0.0432235436984955	0.0377764767022905	-0.720406595897976	0.743201757748762	1
Merged-chr19-36409626-4	chr19	36409483	36409683	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029508, intron 1 of 8)	CpG	30516.0	NM_029508	76073.0	Mm.259180	NM_029508	ENSMUSG00000024805	Pcgf5	0610009F02Rik|1110054A01Rik|5830406C17Rik|5830443C21Rik|9530023M17Rik|AI324127	polycomb group ring finger 5	protein-coding	1.98844851663404	1.81446774236081	1.26394982913917	1.01907024430754	2.0062909651599	2.07329714279666	1.76431902824162	1.02193051703978	0.570797849543252	0.636326517113701	0.982417279970648
Merged-chr1-54923501-4	chr1	54923356	54923556	+	942.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081433, intron 1 of 27)	MER81|DNA|hAT-Blackjack	2931.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-31034747-2	chr17	31034682	31034882	+	602.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22912.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191292577-2	chr1	191292477	191292677	+	954.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25541.0	NM_025424	66208.0	Mm.46444	NM_025424	ENSMUSG00000037499	Nenf	1110060M21Rik|SCIRP10|Spuf	neuron derived neurotrophic factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-43554826-4	chr13	43554723	43554923	+	955.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081059, intron 2 of 8)	intron (NM_001081059, intron 2 of 8)	5368.0	NM_001081059	76137.0	Mm.426290	NM_001081059	ENSMUSG00000021371	Mcur1	6230416A05Rik|AU015498|AV136929|AW554392|C88263|Ccdc90a	mitochondrial calcium uniporter regulator 1	protein-coding	3.20543087129195	3.0735837392185	1.57526030137443	3.37547365158883	3.23181654889888	2.98410523975697	2.10668917157119	3.74012779794309	0.29198199520484	0.704691740968588	0.998431161219273
Merged-chr5-118560203-4	chr5	118560106	118560306	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172424)	promoter-TSS (NM_172424)	-513.0	NM_001347445	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-127768208-3	chr3	127768113	127768313	+	917.7333369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027808, intron 1 of 13)	intron (NM_027808, intron 1 of 13)	12314.0	NM_027808	71481.0	Mm.158704	NM_027808	ENSMUSG00000028028	Alpk1	8430410J10Rik|LAK	alpha-kinase 1	protein-coding	2.4118728836783	3.4055239198856	3.28727951627118	2.71555030062115	3.64412042705379	4.34375121388986	3.87530065073887	4.18653663603703	1.56409791823959	0.00448230801187592	0.0615004884634157
Merged-chr3-133314712-4	chr3	133314598	133314798	+	929.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293641, intron 1 of 11)	intron (NM_001293641, intron 1 of 11)	4588.0	NM_001293641	74776.0	Mm.210305	NM_146141	ENSMUSG00000028013	Ppa2	1110013G13Rik|Sid6306	pyrophosphatase (inorganic) 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-43464224-2	chr7	43464124	43464324	+	673.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290316, intron 2 of 9)	intron (NM_001290316, intron 2 of 9)	991.0	NM_001290316	75690.0	Mm.30200	NM_001290316	ENSMUSG00000070604	Vsig10l	-	V-set and immunoglobulin domain containing 10 like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-75929201-2	chr15	75929101	75929301	+	704.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357005, intron 1 of 10)	intron (NM_001357005, intron 1 of 10)	529.0	NM_031201	22122.0	Mm.22596	NM_031201	ENSMUSG00000022570	Tsta3	AI256181|FX|Tstap35b	tissue specific transplantation antigen P35B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133180405-2	chr4	133180301	133180501	+	625.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153423, intron 2 of 8)	intron (NM_153423, intron 2 of 8)	-15254.0	NR_105984	102466215.0		NR_105984	ENSMUSG00000099202	Mir7017	Gm27945|mmu-mir-7017	microRNA 7017	ncRNA	2.4707025478592	3.04416967300064	2.20942833361587	1.610618074304	2.17903656634311	2.69427016824761	1.66554999442131	3.01548060996865	0.111815683259154	0.899111450198992	0.998431161219273
Merged-chr7-142444329-4	chr7	142444225	142444425	+	943.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009405)	TTS (NM_009405)	1857.0	NM_009405	21953.0	Mm.39469	NM_009405	ENSMUSG00000031097	Tnni2	-	troponin I, skeletal, fast 2	protein-coding	3.33937295044883	2.41140417852685	3.86251506325997	3.14791002037429	4.68969192364089	4.83497839996328	3.74401952791304	3.77377563241681	1.48977607896323	0.00610367762056128	0.0774121819148988
Merged-chr8-88662522-4	chr8	88662431	88662631	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145857, intron 3 of 12)	intron (NM_145857, intron 3 of 12)	15184.0	NM_145857	257632.0	Mm.222633	NM_145857	ENSMUSG00000055994	Nod2	ACUG|BLAU|CD|Card15|F830032C23Rik|IBD1|Nlrc2	nucleotide-binding oligomerization domain containing 2	protein-coding	7.57191096790643	6.90245567032246	7.63413644109442	7.34329704538527	7.45160342282943	7.41955063653298	7.33731262873709	7.15258404521657	-0.052800681887742	0.763044651572473	0.998431161219273
Merged-chr17-48818054-3	chr17	48817929	48818129	+	685.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16B2|LTR|ERVL	-114553.0	NM_027452	70530.0	Mm.133607	NM_027452	ENSMUSG00000040490	Lrfn2	5730420O05Rik|SALM1|mKIAA1246	leucine rich repeat and fibronectin type III domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166516439-4	chr2	166516367	166516567	+	855.5166630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-48055.0	NR_152154	433503.0	Mm.491336	NR_152154		Gm29679	-	predicted gene, 29679	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-108798516-2	chr3	108798416	108798616	+	900.7000119999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_011504, intron 16 of 18)	B2_Mm2|SINE|B2	41986.0	NM_011504	20912.0	Mm.316894	NM_011504	ENSMUSG00000027882	Stxbp3	Munc-18c|Stxbp3a|Sxtbp3|Unc18-3	syntaxin binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-120539307-2	chr2	120539207	120539407	+	620.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_011743, exon 4 of 22)	exon (NM_011743, exon 4 of 22)	24552.0	NM_011743	20402.0	Mm.485295	NM_011743	ENSMUSG00000027288	Zfp106	Cd-1|D2Dcr28|EyeLinc12|H3a|Sh3bp3|Znf106|sirm|zfp-106	zinc finger protein 106	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-55208453-4	chr11	55208380	55208580	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153139, intron 1 of 10)	intron (NM_153139, intron 1 of 10)	4140.0	NM_153139	215335.0	Mm.35732	NM_153139	ENSMUSG00000020261	Slc36a1	5830411H19Rik|AI839897|Pat1	solute carrier family 36 (proton/amino acid symporter), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-50060725-3	chr14	50060616	50060816	+	744.75	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MERVL_2A-int|LTR|ERVL	23963.0	NM_146316	258313.0	Mm.463727	NM_146316	ENSMUSG00000060523	Olfr726	MOR246-4	olfactory receptor 726	protein-coding	0.776359301073274	1.03772578125044	1.31242365165316	0.826081620199014	0.490578441295316	0.51872689174705	0.509640886097742	1.07553376777732	-1.75714142066056	0.286421692540763	1
Merged-chr9-44399961-2	chr9	44399861	44400061	+	636.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_106053)	promoter-TSS (NR_106053)	-462.0	NR_106053	102465658.0		NR_106053	ENSMUSG00000099309	Mir7085	Gm27423|mmu-mir-7085	microRNA 7085	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-130819090-2	chr4	130818990	130819190	+	621.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_011520, exon 3 of 5)	exon (NM_011520, exon 3 of 5)	26553.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80935979-2	chr10	80935879	80936079	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5888.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-84959123-2	chr12	84959023	84959223	+	867.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_178065, intron 1 of 19)	intron (NM_178065, intron 1 of 19)	11763.0	NM_178065	68497.0	Mm.24446	NM_178065	ENSMUSG00000042350	Arel1	1110018G07Rik|AI649076|AW610792|Kiaa0317|mKIAA0317	apoptosis resistant E3 ubiquitin protein ligase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-8788817-3	chr4	8788721	8788921	+	833.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355382, intron 2 of 36)	intron (NM_001355382, intron 2 of 36)	37497.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-28975467-3	chr19	28975365	28975565	+	858.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11311.0	NM_198651	381218.0	Mm.280653	NM_198651	ENSMUSG00000064202	4430402I18Rik	AW122618|Spata6l	RIKEN cDNA 4430402I18 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123580296-2	chr5	123580196	123580396	+	897.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019765, intron 22 of 23)	intron (NM_019765, intron 22 of 23)	-7281.0	NM_029929	77573.0	Mm.41372	NM_029929	ENSMUSG00000029434	Vps33a	3830421M04Rik|AI503300|AW048546|AW554476|bf	VPS33A CORVET/HOPS core subunit	protein-coding	1.17035416003999	1.75717660417232	1.24120360410192	2.10973182924091	1.57679094359982	1.47122559887842	1.57796462470464	1.53081420426671	-0.341127601870931	0.761107250029143	0.998431161219273
Merged-chr12-52604523-4	chr12	52604428	52604628	+	919.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	U6|snRNA|snRNA	-2206.0	NR_045910	73278.0	Mm.396209	NR_045910	ENSMUSG00000100315	1700031P21Rik	-	RIKEN cDNA 1700031P21 gene	ncRNA	-1.20406370813143	-1.56956373024278	-1.57884638916872	-1.58647144159385	-1.598104728449	-1.56755213932999	-1.57674499865798	-1.58510656085539	-1.70745470802464	0.626337835847419	1
Merged-chr18-3005651-7	chr18	3005515	3005715	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	117797.0	NM_001167539	100312476.0	Mm.480293	NM_001167539	ENSMUSG00000091539	Vmn1r238	-	vomeronasal 1 receptor, 238	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-132574912-2	chr7	132574812	132575012	+	709.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016978, intron 1 of 9)	intron (NM_016978, intron 1 of 9)	1486.0	NM_016978	18242.0	Mm.13694	NM_016978	ENSMUSG00000030934	Oat	AI194874|rhg	ornithine aminotransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-147116768-3	chr6	147116657	147116857	+	679.25	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25682.0	NM_001081237	232539.0	Mm.491206	NM_001081237	ENSMUSG00000040102	Klhl42	A330079N23Rik|AI450355|C230080I20Rik|Ctb9|Klhdc5|mKIAA1340	kelch-like 42	protein-coding	2.7655781414368	3.25847352313356	2.81543925039288	2.52714323711513	2.41700383447843	1.56562659267189	2.49556902978964	3.0070349051806	-0.760828814153615	0.332724997843605	0.833345452772687
Merged-chr17-87294150-2	chr17	87294050	87294250	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028639, intron 3 of 19)	intron (NM_028639, intron 3 of 19)	11264.0	NM_028639	225049.0	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-86016666-1	chr9	86016566	86016766	+	716.666687	f0_balb.idr	Intergenic	Intergenic	173814.0	NM_001164792	21983.0	Mm.20864	NM_011627	ENSMUSG00000035274	Tpbg	5T4|AW495680|WAIF1	trophoblast glycoprotein	protein-coding	-0.92093142172544	-0.7119420839788	-0.914675128543814	-0.917027610972179	-0.254065671713894	-0.903274750459549	-0.914002518252816	-0.91661668206149	2.05299597750706	0.501694870387987	1
Merged-chr10-128060953-2	chr10	128060853	128061053	+	767.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_019766, intron 1 of 7)	intron (NM_019766, intron 1 of 7)	1971.0	NM_019766	56351.0	Mm.305816	NM_019766	ENSMUSG00000071072	Ptges3	5730442A20Rik|Ptges|Tebp|cPGES|p23|sid3177	prostaglandin E synthase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27352718-2	chr2	27352618	27352818	+	642.666626	f1_balb.idr|f1_c57bl6.idr	intron (NR_133905, intron 1 of 29)	intron (NR_133905, intron 1 of 29)	74890.0	NR_133905	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-49196623-3	chr13	49196517	49196717	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_013610)	TTS (NM_013610)	9070.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-31910710-4	chr18	31910636	31910836	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026006, exon 1 of 1)	exon (NM_026006, exon 1 of 1)	1167.0	NM_026006	67158.0	Mm.31537	NM_026006	ENSMUSG00000044982	Sft2d3	2610206C24Rik|AI847965|AW046173	SFT2 domain containing 3	protein-coding	5.72087618796709	6.38192670269441	5.46518948926404	5.30418227620806	5.41373798124624	4.69183640304288	5.02348207217187	5.49308606399232	-0.656395143828423	0.0402036191533449	0.286009520500555
Merged-chr17-29497223-4	chr17	29497092	29497292	+	973.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6147.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-18439682-2	chr16	18439582	18439782	+	586.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001353143, intron 5 of 16)	intron (NM_001353143, intron 5 of 16)	-12966.0	NM_001111062	12846.0	Mm.100940	NM_007744	ENSMUSG00000000326	Comt	Comt1|D16Wsu103e|D330014B15Rik	catechol-O-methyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34201782-2	chr17	34201682	34201882	+	788.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_010724)	TTS (NM_010724)	-2697.0	NM_011530	21355.0	Mm.14814	NM_011530	ENSMUSG00000024339	Tap2	ABC18|AI462429|APT2|Abcb3|Ham-2|Ham2|MTP2|PSF2|RING11|Tap-2|Y1|jas	transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-119442304-1	chr13	119442204	119442404	+	565.0	f0_balb.idr	intron (NM_145457, intron 4 of 10)	MTC|LTR|ERVL-MaLR	13402.0	NM_145457	218693.0	Mm.490243	NM_145457	ENSMUSG00000025451	Paip1	PAIP-1	polyadenylate binding protein-interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-15930124-4	chr7	15930029	15930229	+	776.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7758.0	NM_009156	20364.0	Mm.42829	NM_009156	ENSMUSG00000041571	Selenow	Sepw1|selW	selenoprotein W	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-123139953-4	chr4	123139854	123140054	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019489)	promoter-TSS (NM_019489)	-13.0	NM_019489	56031.0	Mm.126873	NM_019489	ENSMUSG00000028651	Ppie	2010010D16Rik|Cyp33	peptidylprolyl isomerase E (cyclophilin E)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-45367307-4	chr8	45367196	45367396	+	989.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153535, intron 1 of 13)	intron (NM_153535, intron 1 of 13)	14995.0	NM_153535	212326.0	Mm.51259	NM_153535	ENSMUSG00000070044	Fam149a	AW213256|mKIAA4166	family with sequence similarity 149, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-24621649-4	chr15	24621553	24621753	+	820.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	792111.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-111741918-2	chr8	111741818	111742018	+	629.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009954, intron 1 of 6)	intron (NM_009954, intron 1 of 6)	1931.0	NM_009954	12927.0	Mm.3758	NM_009954	ENSMUSG00000031955	Bcar1	AI385681|Cas|Crkas	breast cancer anti-estrogen resistance 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27474908-2	chr2	27474808	27475008	+	727.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113573, intron 1 of 11)	intron (NM_001113573, intron 1 of 11)	490.0	NM_023336	67382.0	Mm.28721	NM_023336	ENSMUSG00000026918	Brd3	2410084F24Rik|AW060456|Fsrg2|ORFX|RINGL3	bromodomain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-135281555-2	chr1	135281455	135281655	+	912.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159624, intron 1 of 9)	intron (NM_001159624, intron 1 of 9)	2529.0	NM_145417	215615.0	Mm.291048	NM_145417	ENSMUSG00000041926	Rnpep	-	arginyl aminopeptidase (aminopeptidase B)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-55560262-4	chr12	55560250	55560450	+	937.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4855.0	NM_001277340	79459.0	Mm.392781	NM_001277340	ENSMUSG00000063129	Aldoart2	4933425L11Rik|Aldo1-ps1|Aldoa-ps1	aldolase 1 A, retrogene 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-99375891-4	chr5	99375791	99375991	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-122964.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30717450-4	chr7	30717325	30717525	+	895.008301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018731, intron 10 of 21)	intron (NM_018731, intron 10 of 21)	5216.0	NM_001290627	11944.0	Mm.12821	NM_018731	ENSMUSG00000005553	Atp4a	-	ATPase, H+/K+ exchanging, gastric, alpha polypeptide	protein-coding	0.266339985643931	1.11229877326153	0.120230450267971	0.114370193944215	0.737679391227558	0.348076456070144	0.121898058506969	0.115397022198825	-0.734658694564007	0.711150593533929	1
Merged-chr15-74722315-2	chr15	74722215	74722415	+	762.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198607, intron 1 of 1)	intron (NM_198607, intron 1 of 1)	1081.0	NM_198607	223626.0	Mm.268603	NM_198607	ENSMUSG00000056665	Them6	4930572J05Rik	thioesterase superfamily member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-24932872-2	chr16	24932772	24932972	+	885.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 10 of 12)	intron (NM_178665, intron 10 of 12)	-126767.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-3779965-4	chr13	3779860	3780060	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CAAAA)n|Simple_repeat|Simple_repeat	24358.0	NM_027416	70405.0	Mm.20079	NM_027416	ENSMUSG00000063130	Calml3	2310068O22Rik|AI326174	calmodulin-like 3	protein-coding	4.14029440949362	3.95064257996963	3.32147229279616	2.58679950236545	4.1306470765195	4.622074934168	2.69758836203346	3.33726336296903	0.369817327428401	0.54806809671441	0.95796208018571
Merged-chr17-74709573-2	chr17	74709473	74709673	+	639.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8177.0	NM_152817	74196.0	Mm.209503	NM_152817	ENSMUSG00000024078	Ttc27	2610511O17Rik	tetratricopeptide repeat domain 27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-67219854-2	chr18	67219754	67219954	+	726.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177137, intron 11 of 11)	intron (NM_177137, intron 11 of 11)	14495.0	NM_024190	67064.0	Mm.73777	NM_024190	ENSMUSG00000109901	Chmp1b	2810405I11Rik|Chmp1b1	charged multivesicular body protein 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-107741348-2	chr13	107741248	107741448	+	880.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 8 of 14)	intron (NM_145456, intron 8 of 14)	53951.0	NR_045900	72257.0	Mm.234155	NR_045900	ENSMUSG00000102000	1700006H21Rik	-	RIKEN cDNA 1700006H21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-85700743-4	chr8	85700552	85700752	+	932.474976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_106189)	promoter-TSS (NR_106189)	-253.0	NR_106189	102465898.0		NR_106189	ENSMUSG00000098388	Mir8109	Gm27495|mmu-mir-8109	microRNA 8109	ncRNA	1.32226012692872	0.754299022902125	1.69180268705352	0.724012263696975	1.71966342051389	0.758047086005371	1.9839419487547	0.726371490857587	0.778190722461984	0.608583280294649	0.974576632476413
Merged-chr13-78320885-1	chr13	78320785	78320985	+	547.0	f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-122012.0	NM_010151	13865.0	Mm.439653	NM_010151	ENSMUSG00000069171	Nr2f1	COUP-TF1|COUP-TFI|COUPTFA|EAR-3|EAR3|Erbal3|SVP44|Tcfcoup1	nuclear receptor subfamily 2, group F, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116102744-3	chr11	116102610	116102810	+	649.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	7525.0	NM_001205081	217333.0	Mm.347770	NM_172570	ENSMUSG00000020773	Trim47	2210023F24Rik	tripartite motif-containing 47	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116110789-4	chr11	116110707	116110907	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172570)	promoter-TSS (NM_172570)	-572.0	NM_172570	217333.0	Mm.347770	NM_172570	ENSMUSG00000020773	Trim47	2210023F24Rik	tripartite motif-containing 47	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-51991167-2	chr15	51991067	51991267	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009009, intron 1 of 13)	CpG	593.0	NM_009009	19357.0	Mm.182628	NM_009009	ENSMUSG00000022314	Rad21	SCC1|mKIAA0078	RAD21 cohesin complex component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-65099542-2	chr14	65099442	65099642	+	998.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1436.0	NM_001360385	54616.0	Mm.103748	NM_018788	ENSMUSG00000021978	Extl3	2900009G18Rik|AU040105|Ext1l|mKIAA0519	exostoses (multiple)-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-5222923-1	chr12	5222823	5223023	+	547.0	f1_c57bl6.idr	intron (NM_001164493, intron 2 of 13)	intron (NM_001164493, intron 2 of 13)	152759.0	NM_001164493	208439.0	Mm.388281	NM_001164493	ENSMUSG00000020627	Klhl29	A230106N14Rik|Gm68|Kbtbd9|mKIAA1921	kelch-like 29	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53385873-2	chr4	53385773	53385973	+	556.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54540.0	NM_001159633	100434.0	Mm.482207	NM_133891	ENSMUSG00000028412	Slc44a1	2210409B22Rik|4833416H08Rik|AW547365|CHTL1|CTL1|Cdw92	solute carrier family 44, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-11548040-3	chr11	11547931	11548131	+	866.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	UCON26|Unknown|Unknown	58765.0	NM_028669	73862.0	Mm.159077	NM_028669	ENSMUSG00000020191	Spata48	4930415F15Rik	spermatogenesis associated 48	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43560504-4	chr4	43560406	43560606	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011602, intron 1 of 56)	intron (NM_011602, intron 1 of 56)	2077.0	NM_011602	21894.0	Mm.208601	NM_011602	ENSMUSG00000028465	Tln1	Tln	talin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-145860763-4	chr2	145860635	145860835	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_028724, exon 9 of 13)	exon (NM_028724, exon 9 of 13)	-42506.0	NM_026425	67877.0	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	5.46594735740261	5.02626713729332	5.10063500531267	4.57562001236697	4.71307832114508	4.73186171307603	4.86695647786392	4.77219995817565	-0.376345394707918	0.261876408882901	0.76323720334665
Merged-chr14-74989510-4	chr14	74989402	74989602	+	750.116699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14416.0	NR_046078	100043169.0	Mm.145900	NR_046078	ENSMUSG00000115019	Gm4278	-	predicted gene 4278	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31394149-4	chr14	31394042	31394242	+	918.775024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347585, intron 2 of 7)	intron (NM_001347585, intron 2 of 7)	23535.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-133549599-1	chr3	133549499	133549699	+	662.0	f0_balb.idr	Intergenic	Intergenic	-5209.0	NM_001346736	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125043742-1	chr6	125043642	125043842	+	756.0	f1_c57bl6.idr	intron (NM_133345, intron 1 of 7)	intron (NM_133345, intron 1 of 7)	3894.0	NM_133345	28019.0	Mm.262547	NM_133345	ENSMUSG00000030330	Ing4	D6Wsu147e|D6Xrf92|p29ING4	inhibitor of growth family, member 4	protein-coding	0.102724788231849	0.599935205211198	0.55768472015926	0.109833150765384	0.103781711601371	0.472456986097389	0.11534505068191	0.530389562554296	-0.320209768489527	0.876108290475492	1
Merged-chr4-45850400-2	chr4	45850300	45850500	+	764.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001305421, intron 1 of 18)	intron (NM_001305421, intron 1 of 18)	1453.0	NM_028788	74152.0	Mm.63645	NM_028788	ENSMUSG00000028327	Stra6l	1300002K09Rik|Rbpr2	STRA6-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-144965989-5	chr5	144965933	144966133	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029438)	promoter-TSS (NM_029438)	-203.0	NM_029438	75788.0	Mm.27735	NM_029438	ENSMUSG00000038780	Smurf1	4930431E10Rik|mKIAA1625	SMAD specific E3 ubiquitin protein ligase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-95686247-2	chr11	95686147	95686347	+	726.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19290.0	NM_008831	18673.0	Mm.263862	NM_008831	ENSMUSG00000038845	Phb	Bap32	prohibitin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-112252666-3	chr5	112252626	112252826	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001312884)	promoter-TSS (NM_001312884)	-208.0	NM_021351	12959.0	Mm.40324	NM_021351	ENSMUSG00000066975	Cryba4	-	crystallin, beta A4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-3230320-2	chr17	3230208	3230408	+	939.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-96265.0	NM_001122998	24001.0	Mm.137134	NM_011878	ENSMUSG00000023800	Tiam2	3000002F19Rik|STEF|mKIAA2016	T cell lymphoma invasion and metastasis 2	protein-coding	1.50582415535077	0.778655586753535	1.88718432438433	0.741252624961868	1.52146087486473	0.783242285482111	2.38484959184482	0.744188832097219	0.674038772259575	0.646157776470958	0.984116759910594
Merged-chr1-132135801-3	chr1	132135708	132135908	+	899.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008795, intron 1 of 15)	intron (NM_008795, intron 1 of 15)	3877.0	NM_008795	18557.0	Mm.28130	NM_008795	ENSMUSG00000026437	Cdk18	AA682070|Ctk18|Pctk3	cyclin-dependent kinase 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-41160993-4	chr9	41160887	41161087	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2925.0	NM_176860	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118134589-2	chr11	118134489	118134689	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5370.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132171174-2	chr4	132171074	132171274	+	834.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26688.0	NM_013622	18386.0	Mm.5243	NM_013622	ENSMUSG00000050511	Oprd1	DOR|DOR-1|Nbor|mDOR	opioid receptor, delta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-10418012-4	chr16	10417897	10418097	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011955, intron 4 of 10)	intron (NM_011955, intron 4 of 10)	6059.0	NM_011955	26425.0	Mm.29037	NM_011955	ENSMUSG00000022503	Nubp1	-	nucleotide binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-54807914-4	chr11	54807803	54808003	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12016.0	NR_040284	432562.0	Mm.406948	NR_040284	ENSMUSG00000086789	Lyrm7os	Gm12228	LYR motif containing 7, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165968390-3	chr2	165968245	165968445	+	775.527771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24292.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	1.55457021992033	1.56972219484308	1.34428440289696	1.8712097246668	1.88649595682066	2.12053956068063	1.35209979945245	1.98321870145713	0.846805067388475	0.420482096550531	0.900239863385666
Merged-chr6-124489941-2	chr6	124489841	124490041	+	670.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3172.0	NM_181344	232371.0	Mm.132974	NM_181344	ENSMUSG00000038527	C1rl	C1r-LP|C1rl1|C1rlp	complement component 1, r subcomponent-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-87715434-2	chr16	87715334	87715534	+	773.333374	f1_balb.idr|f1_c57bl6.idr	exon (NM_007520, exon 2 of 5)	exon (NM_007520, exon 2 of 5)	16480.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-38469389-5	chr15	38469392	38469592	+	782.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21055.0	NR_105916	102465574.0		NR_105916	ENSMUSG00000099110	Mir6951	Gm27765|mmu-mir-6951	microRNA 6951	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-35337076-4	chr2	35336978	35337178	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013515)	promoter-TSS (NM_013515)	-69.0	NM_013515	13830.0	Mm.295284	NM_013515	ENSMUSG00000026880	Stom	Epb7.2	stomatin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-75856154-2	chr16	75856054	75856254	+	960.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	IMPB_01|Satellite|Satellite	53112.0	NM_023380	67742.0	Mm.131406	NM_023380	ENSMUSG00000022876	Samsn1	4930571B16Rik|930571B16Rik|Hacs1|SLy2	SAM domain, SH3 domain and nuclear localization signals, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115347244-1	chr5	115347144	115347344	+	547.0	f1_balb.idr	intron (NM_007748, intron 2 of 2)	B1F2|SINE|Alu	1711.0	NM_007748	12861.0	Mm.43415	NM_007748	ENSMUSG00000041697	Cox6a1	VIaL	cytochrome c oxidase subunit VIa polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-173511814-4	chr1	173511714	173511914	+	747.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	24143.0	NM_001024721	545384.0	Mm.371698	NM_001024721	ENSMUSG00000070501	Ifi214	Pyhin-B|p214	interferon activated gene 214	protein-coding	1.82896148129136	1.17781183176751	2.19139964759379	2.29526589813156	1.94302010418484	1.42764165057736	1.73857452528881	1.68750905755273	-0.683799237604281	0.519937451621776	0.947641799425091
Merged-chr1-176801097-4	chr1	176800984	176801184	+	979.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001099637, intron 1 of 19)	intron (NM_001099637, intron 1 of 19)	6040.0	NM_001099637	545389.0	Mm.269991	NM_001024722	ENSMUSG00000057335	Cep170	4933426L22Rik|A330004A13Rik|AI195353	centrosomal protein 170	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118685664-2	chr9	118685564	118685764	+	727.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 13 of 27)	intron (NM_133721, intron 13 of 27)	-26028.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107545239-2	chr9	107545120	107545320	+	742.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_018879, intron 9 of 10)	intron (NM_018879, intron 9 of 10)	-2090.0	NM_053253	114602.0	Mm.28331	NM_053253	ENSMUSG00000010044	Zmynd10	Blu	zinc finger, MYND domain containing 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-24971512-4	chr19	24971403	24971603	+	984.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9887.0	NM_146097	226043.0	Mm.272127	NM_146097	ENSMUSG00000024878	Cbwd1	AV349248|BC018472	COBW domain containing 1	protein-coding	3.72936499835524	3.35692739893534	2.08566006227042	3.97966516517778	4.22842955502349	4.13001164303945	3.64493964831815	4.15552331204995	0.848016775676009	0.128306389344215	0.560332465185109
Merged-chr8-10896222-2	chr8	10896122	10896322	+	933.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3700.0	NR_102285	71624.0	Mm.139075	NR_102285	ENSMUSG00000109089	4833411C07Rik	-	RIKEN cDNA 4833411C07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-33761775-2	chr17	33761675	33761875	+	659.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-1289.0	NM_008997	19326.0	Mm.387587	NM_008997	ENSMUSG00000077450	Rab11b	A730055L17Rik	RAB11B, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-17619240-4	chr17	17619151	17619351	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172827, intron 1 of 17)	intron (NM_172827, intron 1 of 17)	5238.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	4.4599175579297	3.97083979464685	4.79056411937629	4.67249383148259	4.06039037596042	3.82968976603502	4.27015136228979	3.39330123735428	-0.773923538328692	0.0743088018864728	0.411994919146904
Merged-chr8-57645037-1	chr8	57644937	57645137	+	569.0	f1_c57bl6.idr	intron (NM_001167981, intron 1 of 11)	intron (NM_001167981, intron 1 of 11)	-6716.0	NR_040698	100502619.0	Mm.393851	NR_040698		AW046200	-	expressed sequence AW046200	ncRNA	-1.12007123334057	-1.23751541721827	-0.799610455274731	-1.25644006657821	-1.26447365240828	-1.23526386158843	-1.24555334641492	-1.25491236783429	-2.40709883940037	0.4691507995815	1
Merged-chr5-64386046-2	chr5	64385946	64386146	+	798.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	81896.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	0.510377972377001	0.547542681800312	1.51476026635752	1.26687541579586	0.843730062567845	0.55020671016675	1.43653119276726	0.527878679118404	-0.575912482958775	0.732803348376198	0.998431161219273
Merged-chr11-116413806-4	chr11	116413726	116413926	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027258)	promoter-TSS (NM_027258)	-794.0	NM_027258	217340.0	Mm.426344	NM_027258	ENSMUSG00000052949	Rnf157	2610036E23Rik|A130073L17Rik|mKIAA1917	ring finger protein 157	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-61971287-3	chr9	61971195	61971395	+	956.333374	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028748, intron 4 of 7)	intron (NM_028748, intron 4 of 7)	-24496.0	NM_024245	71819.0	Mm.259374	NM_024245	ENSMUSG00000032254	Kif23	3110001D19Rik|C87313|CHO1|Knsl5|MKLP-1|MKLP1	kinesin family member 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-24792531-4	chr13	24792406	24792606	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9151.0	NM_024473	79555.0	Mm.266668	NM_024473	ENSMUSG00000019132	BC005537	8030460C05Rik|C78201	cDNA sequence BC005537	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-113620228-2	chr13	113620128	113620328	+	568.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1664.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-99204390-2	chr2	99204277	99204477	+	603.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus1|LINE|L1	1736720.0	NM_178725	241568.0	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-53452762-3	chr19	53452660	53452860	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028427, intron 2 of 9)	intron (NR_028427, intron 2 of 9)	12036.0	NR_028427	381232.0	Mm.248624	NR_028427	ENSMUSG00000097636	Mirt1	4833407H14Rik|5430437C04Rik|5830416P10Rik|Gm10758	myocardial infarction associated transcript 1	ncRNA	2.37735561165145	2.85229008223413	2.75058792240284	3.22164566562758	3.68046008067724	3.78101695100816	3.79314798499674	3.8549659956428	1.52708540724524	0.00731071996252513	0.0871908728731377
Merged-chr17-35518157-1	chr17	35518057	35518257	+	630.0	f1_c57bl6.idr	intron (NM_146248, intron 1 of 17)	intron (NM_146248, intron 1 of 17)	1041.0	NM_146248	240084.0	Mm.49544	NM_146248	ENSMUSG00000040312	Cchcr1	Hcr	coiled-coil alpha-helical rod protein 1	protein-coding	0.408559593148186	0.974623803042491	0.624235878860915	1.36854480992656	0.410370830201007	0.439196138571855	0.629980836575025	1.01404055462491	-1.28902806521546	0.450380456504491	1
Merged-chr17-56291297-4	chr17	56291187	56291387	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025836)	promoter-TSS (NM_025836)	-776.0	NM_025836	66905.0	Mm.311696	NM_025836	ENSMUSG00000024197	Plin3	1300012C15Rik|M6prbp1|Tip47	perilipin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-96409553-2	chr9	96409455	96409655	+	809.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR30D2_MM|LTR|ERV1	-45124.0	NM_001357212	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	-0.369732346369014	-0.164295212532655	-0.361181509854849	-0.364398358913455	-0.368939370252814	0.264067293798116	-0.36026138134178	0.0642276163185646	2.69510116785412	0.278910273254605	1
Merged-chr13-24416550-4	chr13	24416448	24416648	+	867.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007717, intron 1 of 15)	intron (NM_007717, intron 1 of 15)	1426.0	NM_001284520	12763.0	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-103969298-8	chr2	103969169	103969369	+	934.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001142336)	promoter-TSS (NM_001142336)	-288.0	NM_001142336	16909.0	Mm.29266	NM_008505	ENSMUSG00000032698	Lmo2	Rbtn-2|Rbtn2|Rhom-2|Ttg2	LIM domain only 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-111654243-2	chr8	111654131	111654331	+	696.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358993, intron 1 of 3)	intron (NM_001358993, intron 1 of 3)	10788.0	NM_011742	22640.0	Mm.4184	NM_011742	ENSMUSG00000055835	Zfp1	Fnp-1|Zfp-1|mkr-1	zinc finger protein 1	protein-coding	0.832445608452652	2.56850983615697	1.16933019495149	1.81227867721654	0.838579131431204	2.59010254141409	0.901536885326366	1.82353293091579	-0.048176922651718	0.970781255681839	0.998431161219273
Merged-chr14-14640373-4	chr14	14640273	14640473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62652.0	NM_001360505	218756.0	Mm.258893	NM_001033270	ENSMUSG00000021733	Slc4a7	E430014N10Rik|NBC3|NBCn1|NBCn1-G|Tg(Thy1-SNCA)12Mjff	solute carrier family 4, sodium bicarbonate cotransporter, member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46935624-2	chr8	46935524	46935724	+	983.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51263.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-156862243-4	chr2	156862166	156862366	+	924.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026124)	promoter-TSS (NM_026124)	679.0	NR_015591	74487.0	Mm.490465	NR_015591	ENSMUSG00000085741	5430405H02Rik	2610307N17Rik	RIKEN cDNA 5430405H02 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-107900608-4	chr5	107900549	107900749	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016980, intron 1 of 7)	CpG	121.0	NM_016980	100503670.0	Mm.277897	NM_016980	ENSMUSG00000058558	Rpl5	U21RNA	ribosomal protein L5	protein-coding	5.94450190034516	5.11102778879441	6.39928032600583	5.34026056104175	5.83725048960359	4.63778310102434	5.77167476541969	4.96591095989194	-0.442590074298921	0.211095565761706	0.700323931057359
Merged-chr18-27220499-2	chr18	27220399	27220599	+	581.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1339665.0	NR_045398	320624.0	Mm.50107	NR_045398		4930474G06Rik	-	RIKEN cDNA 4930474G06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89795751-3	chr3	89795656	89795856	+	606.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22147.0	NM_027315	70093.0	Mm.41438	NM_027315	ENSMUSG00000042572	Ube2q1	1110002C01Rik|2310012M18Rik|AI854014|Gtap|NICE-5|PRO3094|Ube2q	ubiquitin-conjugating enzyme E2Q family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125548642-4	chr6	125548542	125548742	+	910.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4306.0	NM_011708	22371.0	Mm.22339	NM_011708	ENSMUSG00000001930	Vwf	6820430P06Rik|AI551257|B130011O06Rik|C630030D09|F8VWF|VWD	Von Willebrand factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-84243626-1	chr12	84243526	84243726	+	1000.0	f0_c57.idr	Intergenic	Intergenic	-24745.0	NM_001163501	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141902508-4	chr7	141902409	141902609	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347562)	promoter-TSS (NM_001347562)	-48.0	NM_001347562	54473.0	Mm.103551	NM_023764	ENSMUSG00000025139	Tollip	4930403G24Rik|4931428G15Rik	toll interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-121885051-4	chr3	121884940	121885140	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68189.0	NM_172525	214137.0	Mm.229287	NM_172525	ENSMUSG00000039831	Arhgap29	6720461J18Rik|A830014I19|AU040217|B130017I01Rik|C76601|Parg1	Rho GTPase activating protein 29	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-125393254-4	chr5	125393149	125393349	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3232.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106650555-2	chr11	106650455	106650655	+	743.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-37625.0	NM_198292	21763.0	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127549106-2	chr10	127549008	127549208	+	795.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 68 of 88)	intron (NM_008512, intron 68 of 88)	-14549.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	-0.37790657608628	-0.7425209476875	-0.745752534966227	-0.748241895791257	-0.75175369388296	-0.741791734322997	-0.166202711934189	-0.747807260520129	0.813296986456869	0.785019466223198	1
Merged-chr7-88252236-3	chr7	88252141	88252341	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-25844.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180938935-2	chr1	180938835	180939035	+	597.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_010094)	TTS (NM_010094)	-3583.0	NM_144794	208795.0	Mm.185518	NM_144794	ENSMUSG00000026519	Tmem63a	BC014795|Tmem64a	transmembrane protein 63a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-37190240-4	chr10	37190111	37190311	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51285.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31175164-2	chr14	31175064	31175264	+	815.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_022656, intron 16 of 20)	intron (NM_022656, intron 16 of 20)	-6523.0	NM_138672	192187.0	Mm.220821	NM_138672	ENSMUSG00000042286	Stab1	FEEL-1|FELE-1|MFEEL-1|MS-1|STAB-1|mKIAA0246	stabilin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76232578-4	chr15	76232455	76232655	+	914.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001163575)	TTS (NM_001163575)	-1177.0	NM_011117	18810.0	Mm.234912	NM_011117	ENSMUSG00000022565	Plec	AA591047|AU042537|EBS1|PCN|PLTN|Plec1	plectin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45163927-3	chr7	45163822	45164022	+	946.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_182993)	promoter-TSS (NM_182993)	1.0	NM_182993	72961.0	Mm.255631	NM_182993	ENSMUSG00000070570	Slc17a7	2900052E22Rik|AI851913|Vglut1	solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-57528008-2	chr9	57527908	57528108	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007747, intron 1 of 4)	B3A|SINE|B2	6776.0	NM_007747	12858.0	Mm.273403	NM_007747	ENSMUSG00000000088	Cox5a	AA959768|CcOX	cytochrome c oxidase subunit Va	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-57228843-4	chr16	57228736	57228936	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026254, intron 1 of 17)	MTC|LTR|ERVL-MaLR	2630.0	NM_026254	67581.0	Mm.257819	NM_026254	ENSMUSG00000022749	Tbc1d23	4930451A13Rik|AU015720|AU043671|AU043778|D030022P07Rik|W51689	TBC1 domain family, member 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-98834328-2	chr15	98834228	98834428	+	866.916626	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001033276, exon 55 of 55)	3' UTR (NM_001033276, exon 55 of 55)	-2820.0	NM_016781	19082.0	Mm.6670	NM_016781	ENSMUSG00000067713	Prkag1	AA571379|BB036179|Prkaac	protein kinase, AMP-activated, gamma 1 non-catalytic subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-130888066-3	chr3	130887964	130888164	+	792.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-157666.0	NM_001005859	68436.0	Mm.140568	NM_026724	ENSMUSG00000062006	Rpl34	1100001I22Rik	ribosomal protein L34	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30719839-2	chr2	30719739	30719939	+	635.400024	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1371.0	NR_037272	100526499.0		NR_037272	ENSMUSG00000093091	Mir3089	mir-3089|mmu-mir-3089	microRNA 3089	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-66815465-2	chr1	66815365	66815565	+	839.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357156, intron 1 of 14)	intron (NM_001357156, intron 1 of 14)	2130.0	NM_177645	68691.0	Mm.240912	NM_177645	ENSMUSG00000026004	Kansl1l	1110028C15Rik|1190030G24|AI427598|C430010P07Rik|mKIAA4189	KAT8 regulatory NSL complex subunit 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-169927104-2	chr2	169927004	169927204	+	577.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36083.0	NR_131974	446211.0	Mm.266854	NR_131974	ENSMUSG00000103935	AY702102	STDP1	cDNA sequence AY702102	ncRNA	-0.30228880646733	-0.10585604582538	0.016598345209923	-0.297247413714289	-0.301540484622272	-0.10138933293916	0.259424416157969	-0.296715400127473	0.76909185812769	0.742726318716758	1
Merged-chr11-119477262-2	chr11	119477162	119477362	+	665.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153849, intron 2 of 3)	intron (NR_153849, intron 2 of 3)	13973.0	NR_153849	78439.0	Mm.440446	NR_153849	ENSMUSG00000109408	A930037H05Rik	Gm44935	RIKEN cDNA A930037H05 gene	ncRNA	-1.18302134691506	-1.15893813914636	-1.16954601498264	-1.01688116837571	-0.706931804553649	-1.15663936820083	-1.16714462441132	-1.17669990531683	1.47460249523148	0.657520571745587	1
Merged-chr7-120689006-2	chr7	120688906	120689106	+	682.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164580, intron 1 of 2)	B3A|SINE|B2	11386.0	NM_001164580	233812.0	Mm.276479	NM_001164580	ENSMUSG00000046096	Mosmo	Atthog	modulator of smoothened	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-76871455-2	chr12	76871355	76871555	+	747.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145927, intron 2 of 11)	intron (NM_145927, intron 2 of 11)	33988.0	NM_145927	110606.0	Mm.151174	NM_145927	ENSMUSG00000033373	Fntb	2010013E13Rik|AA409500	farnesyltransferase, CAAX box, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-79863596-3	chr11	79863492	79863692	+	920.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	98795.0	NM_144826	216987.0	Mm.274961	NM_144826	ENSMUSG00000035575	Utp6	4732497O03Rik|HCA66	UTP6 small subunit processome component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-58514549-2	chr16	58514449	58514649	+	977.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357433, intron 1 of 10)	intron (NM_001357433, intron 1 of 10)	8877.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-30218261-1	chr14	30218161	30218361	+	601.0	f0_balb.idr	intron (NM_001083616, intron 3 of 46)	intron (NM_001083616, intron 3 of 46)	135225.0	NM_001302637	12289.0	Mm.9772	NM_028981	ENSMUSG00000015968	Cacna1d	8430418G19Rik|C79217|Cach3|Cacn4|Cacnl1a2|Cav1.3|Cchl1a|Cchl1a2|D-LTCC	calcium channel, voltage-dependent, L type, alpha 1D subunit	protein-coding	-1.2087802031865	-1.18255559123277	-1.1934648774972	-1.20242609004962	-1.0572203610596	-0.684244446803552	-1.19099525421168	-1.20082203728721	2.61682731156801	0.42085555974408	1
Merged-chr10-13966946-4	chr10	13966839	13967039	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358782, intron 1 of 9)	CpG-904	560.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-120517730-4	chr5	120517637	120517837	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177595, intron 2 of 13)	intron (NM_001177595, intron 2 of 13)	6545.0	NM_001177594	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71672170-2	chr17	71672070	71672270	+	866.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-1091.0	NM_177087	320159.0	Mm.187372	NM_177087	ENSMUSG00000045761	Togaram2	4632412N22Rik|Fam179a	TOG array regulator of axonemal microtubules 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55789332-4	chr19	55789227	55789427	+	820.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001331146, intron 4 of 14)	intron (NM_001331146, intron 4 of 14)	47517.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-27579450-4	chr3	27579342	27579542	+	990.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356953, intron 4 of 26)	intron (NM_001356953, intron 4 of 26)	5553.0	NR_037275	100526525.0		NR_037275	ENSMUSG00000092695	Mir3092	mir-3092|mmu-mir-3092	microRNA 3092	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100390143-2	chr11	100390043	100390243	+	603.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010593, intron 1 of 13)	intron (NM_010593, intron 1 of 13)	7647.0	NM_010593	16480.0	Mm.299774	NM_010593	ENSMUSG00000001552	Jup	Ctnng|D930025P04Rik|PG	junction plakoglobin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-47281070-4	chr19	47280986	47281186	+	987.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164717, intron 9 of 13)	intron (NM_001164717, intron 9 of 13)	-7497.0	NR_105961	102466782.0		NR_105961	ENSMUSG00000098786	Mir6995	Gm27576|mmu-mir-6995	microRNA 6995	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-118938873-4	chr14	118938729	118938929	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008929, intron 1 of 11)	intron (NM_008929, intron 1 of 11)	897.0	NM_008929	100037258.0	Mm.12616	NM_008929	ENSMUSG00000022136	Dnajc3	AA408985|AU067833|Dnajc3a|Dnajc3b|Prkri|mp58|p58|p58IPK	DnaJ heat shock protein family (Hsp40) member C3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-30574382-4	chr14	30574267	30574467	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009388, exon 14 of 14)	3' UTR (NM_009388, exon 14 of 14)	2218.0	NR_037237	100526475.0		NR_037237	ENSMUSG00000093156	Mir3076	mir-3076|mmu-mir-3076	microRNA 3076	ncRNA	3.25689342324482	3.17267401951746	2.30949909524703	2.24198211657759	2.14079594538153	3.0198674015956	1.47102036435426	2.91481730080658	-0.576330411832638	0.491984196873212	0.934850158278556
Merged-chr13-113544825-3	chr13	113544728	113544928	+	738.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR52|LTR|ERVL	-41984.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-41179251-4	chr9	41179138	41179338	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21176.0	NM_176860	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	4.13525716628155	4.76813709905997	4.94586446000436	4.89654310336459	6.1331438777098	6.62447254396107	5.67370360921012	6.77275471535832	1.86116619237556	2.55068047908813e-09	3.73208102293895e-07
Merged-chr3-89196703-4	chr3	89196604	89196804	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6221.0	NM_001077411	14466.0	Mm.5031	NM_008094	ENSMUSG00000028048	Gba	GBA1|GC|GCase|GLUC|betaGC	glucosidase, beta, acid	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-47148582-4	chr19	47148466	47148666	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4392.0	NM_001081271	546729.0	Mm.439624	NM_001081271	ENSMUSG00000079258	Calhm1	EG546729	calcium homeostasis modulator 1	protein-coding	4.19283711781095	3.56189516461866	4.62201039800363	4.9924060488736	5.05865736344597	4.48492299517092	4.60796230528383	4.47700318186051	0.297818836628483	0.473046931772669	0.926125823511231
Merged-chr15-100604723-4	chr15	100604570	100604770	+	946.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4686.0	NM_001304965	19009.0	Mm.28825	NM_010127	ENSMUSG00000009739	Pou6f1	2310038G18Rik|C79593|Emb|cns-1	POU domain, class 6, transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-152170236-2	chr4	152170136	152170336	+	552.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7864.0	NM_133348	70025.0	Mm.296191	NM_133348	ENSMUSG00000028937	Acot7	2410041A17Rik|Ach1|Act|Bach|CTE-IIa|Cte-II|Lach1	acyl-CoA thioesterase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-44694770-2	chr10	44694670	44694870	+	697.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-236022.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-9907692-3	chr10	9907575	9907775	+	952.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6635.0	NM_001081344	78808.0	Mm.331751	NM_030191	ENSMUSG00000019790	Stxbp5	0710001E20Rik|4930565N16Rik|AW742610|LGL3|mKIAA1006	syntaxin binding protein 5 (tomosyn)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141425877-3	chr4	141425790	141425990	+	729.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_013868)	TTS (NM_013868)	5111.0	NM_013868	29818.0	Mm.46181	NM_013868	ENSMUSG00000006221	Hspb7	27kDa|Hsp25-2|cvHsp	heat shock protein family, member 7 (cardiovascular)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99054016-2	chr7	99053916	99054116	+	554.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 6 of 14)	RMER2|LTR|ERV1	87128.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100121052-4	chr7	100120995	100121195	+	970.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133692, intron 1 of 11)	intron (NM_133692, intron 1 of 11)	405.0	NM_133692	67967.0	Mm.37562	NM_133692	ENSMUSG00000030726	Pold3	2410142G14Rik|C85233|P66|P68	polymerase (DNA-directed), delta 3, accessory subunit	protein-coding	2.57123783071405	2.79323282251967	2.69799005664505	3.19794126676915	2.06495081968393	2.15430035055974	2.24129937742679	1.37829838608165	-1.85428544405122	0.0261999625725022	0.216591973549528
Merged-chr12-55361145-4	chr12	55361033	55361233	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025373, intron 4 of 6)	intron (NM_025373, intron 4 of 6)	-23089.0	NM_001310583	26443.0	Mm.30210	NM_011968	ENSMUSG00000021024	Psma6	IOTA	proteasome (prosome, macropain) subunit, alpha type 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-80437140-2	chr18	80437064	80437264	+	651.06665	f1_balb.idr|f1_c57bl6.idr	intron (NM_026295, intron 10 of 12)	intron (NM_026295, intron 10 of 12)	32503.0	NM_026295	67655.0	Mm.312893	NM_026295	ENSMUSG00000033323	Ctdp1	4930563P03Rik|AW553592	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1	protein-coding	-0.58175222507513	-0.230880968316075	-0.713786975051059	-0.71616431813154	-0.719512114637947	-0.709997220768064	-0.389780833140016	-0.715749493197587	-0.978883310676663	0.724362937213345	1
Merged-chr17-47331927-3	chr17	47331815	47332015	+	669.799988	f1_balb.idr|f1_c57bl6.idr	intron (NM_001097623, intron 14 of 19)	MTD|LTR|ERVL-MaLR	-36972.0	NM_001146212	64657.0	Mm.216250	NM_183086	ENSMUSG00000034729	Mrps10	1110038B19Rik|AW743084|Rpms10	mitochondrial ribosomal protein S10	protein-coding	2.17285245129958	3.31120114055105	1.78618560655607	3.25108074186383	2.74388773526855	2.29614529317223	3.2992512681138	2.5734143394989	-0.0265792696508079	0.97313008300204	0.998431161219273
Merged-chr15-62153504-7	chr15	62153424	62153624	+	853.142883	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_003368, intron 3 of 8)	intron (NR_003368, intron 3 of 8)	65927.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-111093163-4	chr11	111093073	111093273	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27009.0	NM_008425	16518.0	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding	1.3331093341278	1.03555108250062	1.44084494419067	2.01640196377494	2.0837542227639	1.67500850261833	2.27639160986031	1.0002841522975	0.99053450075813	0.408350885741166	0.892181486875301
Merged-chr16-22009780-2	chr16	22009682	22009882	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_001357424, intron 1 of 15)	CpG	298.0	NM_001357424	75826.0	Mm.297431	NM_029457	ENSMUSG00000022855	Senp2	2310007L05Rik|4930538C18Rik|AI646780|AW554757|Smt3ip2|SuPr-1|mKIAA1331	SUMO/sentrin specific peptidase 2	protein-coding	3.38813877771005	3.74099449864209	2.94476407516148	3.09643046610132	1.68166158152215	1.35052180736124	1.60372569224034	1.54558756958911	-4.00898058594586	2.25503897374218e-05	0.000893919304194669
Merged-chr12-111433186-4	chr12	111433111	111433311	+	910.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9450.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-11510178-2	chr10	11510078	11510278	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	-99046.0	NM_013898	30058.0	Mm.214504	NM_013898	ENSMUSG00000048007	Timm8a1	DXHXS1274E|Ddp1|Fci-12|Tim8a|Timm8a	translocase of inner mitochondrial membrane 8A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-35500172-2	chr6	35500072	35500272	+	564.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB4|LINE|L1	39716.0	NM_008098	14489.0	Mm.182746	NM_008098	ENSMUSG00000029840	Mtpn	5033418D15Rik|Gcdp|V1	myotrophin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88719171-4	chr3	88719058	88719258	+	957.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028056, intron 3 of 5)	intron (NR_028056, intron 3 of 5)	2304.0	NR_028056	19769.0	Mm.4009	NM_009069	ENSMUSG00000028057	Rit1	RIBB|ROC1|Rit	Ras-like without CAAX 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-148614801-2	chr6	148614701	148614901	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045867)	promoter-TSS (NR_045867)	-492.0	NR_045867	622319.0	Mm.491049	NM_001037912	ENSMUSG00000070995	Gm6313	EG622319	predicted gene 6313	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-142076046-4	chr4	142075876	142076076	+	947.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145402, intron 1 of 2)	intron (NM_145402, intron 1 of 2)	-8322.0	NR_027137	100038693.0	Mm.402714	NR_027137	ENSMUSG00000073728	Tmem51os1	Gm10565|Tmem51as1	Tmem51 opposite strand 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-158861622-2	chr2	158861522	158861722	+	553.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	66815.0	NM_001291144	71715.0	Mm.315652	NM_145742	ENSMUSG00000027655	Dhx35	1200009D07Rik|Ddx35	DEAH (Asp-Glu-Ala-His) box polypeptide 35	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-56064273-4	chr8	56064140	56064340	+	755.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080438, intron 5 of 9)	B4A|SINE|B4	123415.0	NM_080438	110304.0	Mm.307061	NM_080438	ENSMUSG00000038257	Glra3	-	glycine receptor, alpha 3 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53116501-1	chr4	53116401	53116601	+	548.0	f0_balb.idr	intron (NM_013454, intron 5 of 49)	intron (NM_013454, intron 5 of 49)	43394.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-65769610-4	chr17	65769503	65769703	+	781.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133685, intron 1 of 6)	intron (NM_133685, intron 1 of 6)	3149.0	NM_133685	106572.0	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	0.873112440949706	0.815005299857171	0.963529257322456	1.7364275728233	0.544146307806707	0.584193764866266	0.5714341212683	1.51398930470648	-1.07382656236668	0.494225654910994	0.935679785535167
Merged-chr10-69212216-2	chr10	69212116	69212316	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081347)	promoter-TSS (NM_001081347)	-441.0	NM_001081347	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-79537708-2	chr14	79537608	79537808	+	627.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_007920, intron 2 of 8)	intron (NM_007920, intron 2 of 8)	22034.0	NM_001286411	13709.0	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115533188-2	chr5	115533088	115533288	+	576.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011223, intron 1 of 10)	B3|SINE|B2	-26279.0	NM_007475	11837.0	Mm.5286	NM_007475	ENSMUSG00000067274	Rplp0	36B4|Arbp|L10E	ribosomal protein, large, P0	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-79964375-2	chr10	79964275	79964475	+	890.333374	f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 1 of 4)	intron (NR_038088, intron 1 of 4)	4223.0	NM_175450	216156.0	Mm.35828	NM_175450	ENSMUSG00000035754	Wdr18	2310012I10Rik|AU044733|AW122032	WD repeat domain 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-5420003-3	chr13	5419909	5420109	+	991.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	438083.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-152397156-4	chr3	152397119	152397319	+	976.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001287139, intron 1 of 13)	intron (NM_001287139, intron 1 of 13)	535.0	NM_001287139	108946.0	Mm.379292	NM_198416	ENSMUSG00000039068	Zzz3	3110065C23Rik|6430567E01Rik|AA408566|AI481057|AW556059|R75514	zinc finger, ZZ domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152682738-4	chr1	152682733	152682933	+	995.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346117, intron 1 of 18)	intron (NM_001346117, intron 1 of 18)	-57616.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-135584017-2	chr7	135583917	135584117	+	647.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001316678, intron 1 of 19)	intron (NM_001316678, intron 1 of 19)	-9464.0	NM_001316680	19267.0	Mm.945	NM_011212	ENSMUSG00000041836	Ptpre	PTPe|PTPepsilon|RPTPepsilon	protein tyrosine phosphatase, receptor type, E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-38484987-4	chr3	38484902	38485102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001167883)	promoter-TSS (NM_001167883)	-186.0	NM_001167883	99696.0	Mm.290937	NM_001033198	ENSMUSG00000044864	Ankrd50	AI662170|E430012K20Rik|mKIAA1223|mKIAA3019	ankyrin repeat domain 50	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72107976-4	chr6	72107889	72108089	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011375, intron 1 of 6)	intron (NM_011375, intron 1 of 6)	10381.0	NM_011375	20454.0	Mm.38248	NM_011375	ENSMUSG00000056091	St3gal5	3S-T|Siat9|[a]2	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70511354-2	chr11	70511254	70511454	+	583.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_029360)	TTS (NM_029360)	3262.0	NM_001013607	327956.0	Mm.244514	NM_001013607	ENSMUSG00000020830	Vmo1	Gm741	vitelline membrane outer layer 1 homolog (chicken)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-56774560-4	chr19	56774470	56774670	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39113.0	NM_170757	213993.0	Mm.469677	NM_170757	ENSMUSG00000035173	Ccdc186	1810028B20Rik|A630007B06Rik|AI159700|Otg1	coiled-coil domain containing 186	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-62170542-2	chr18	62170442	62170642	+	944.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9439.0	NM_007420	11555.0	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-23893149-2	chr18	23893049	23893249	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001162942, exon 8 of 8)	3' UTR (NM_001162942, exon 8 of 8)	-61539.0	NM_027007	69256.0	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-34210424-4	chr5	34210327	34210527	+	868.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001015039, intron 8 of 12)	intron (NM_001015039, intron 8 of 12)	-22717.0	NM_010753	17122.0	Mm.259260	NM_010753	ENSMUSG00000037235	Mxd4	2810410A03Rik|Mad4|bHLHc12	Max dimerization protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-122014534-2	chr14	122014434	122014634	+	650.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026861, intron 8 of 8)	intron (NM_026861, intron 8 of 8)	-20140.0	NM_001037744	223262.0	Mm.297637	NM_001037744	ENSMUSG00000071229	Timm8a2	-	translocase of inner mitochondrial membrane 8A2	protein-coding	-1.23826193677681	-1.21241040182355	-1.22270105026776	-0.934241458926562	-1.23783648736863	-1.21018037537722	-1.22037147302458	-0.929982742503718	0.0323590357436516	0.9924297640193	1
Merged-chr16-38106699-4	chr16	38106601	38106801	+	697.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347232, intron 1 of 11)	intron (NM_001347232, intron 1 of 11)	-17441.0	NR_033221	414072.0	Mm.483602	NR_033221		BC031361	-	cDNA sequence BC031361	ncRNA	2.89780184556122	3.08150924083634	2.80214076150959	2.51828102154294	2.69497820022346	1.57215518739582	2.48701416788887	2.6394426254916	-0.825035388159557	0.287799867002405	0.793449317735943
Merged-chr3-87929575-2	chr3	87929475	87929675	+	813.083374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177663)	promoter-TSS (NM_177663)	620.0	NM_153562	229503.0	Mm.296008	NM_153562	ENSMUSG00000004896	Rrnad1	-	ribosomal RNA adenine dimethylase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-53859426-2	chr1	53859326	53859526	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001883, intron 19 of 28)	intron (NM_001001883, intron 19 of 28)	10002.0	NR_106149	102465783.0		NR_106149	ENSMUSG00000098443	Mir7681	Gm27806|mmu-mir-7681	microRNA 7681	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-151269930-4	chr1	151269827	151270027	+	923.0750119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74559.0	NM_001359262	117198.0	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-105680761-2	chr1	105680661	105680861	+	654.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029349, intron 2 of 27)	B3|SINE|B2	16900.0	NM_029349	227446.0	Mm.337339	NM_029349	ENSMUSG00000026319	2310035C23Rik	6430401N10|Kiaa1468|Relch|mKIAA1468	RIKEN cDNA 2310035C23 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-86226800-1	chr11	86226700	86226900	+	545.0	f1_balb.idr	exon (NM_027421, exon 17 of 25)	exon (NM_027421, exon 17 of 25)	25440.0	NR_130958	74038.0	Mm.171304	NR_130958	ENSMUSG00000085208	Brip1os	4632419I22Rik	BRCA1 interacting protein C-terminal helicase 1, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-5712028-2	chr13	5711928	5712128	+	568.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	146064.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70757767-2	chr8	70757667	70757867	+	803.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_183170)	TTS (NM_183170)	3088.0	NM_001166399	19339.0	Mm.5083	NM_009001	ENSMUSG00000031840	Rab3a	-	RAB3A, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45716250-4	chr7	45716146	45716346	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001172561, intron 1 of 5)	intron (NM_001172561, intron 1 of 5)	-1039.0	NM_020011	56632.0	Mm.24222	NM_020011	ENSMUSG00000057342	Sphk2	C76851	sphingosine kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-55019546-2	chr13	55019436	55019636	+	847.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033245, intron 1 of 18)	intron (NM_001033245, intron 1 of 18)	1283.0	NM_001206390	212032.0	Mm.267479	NM_001033245	ENSMUSG00000025877	Hk3	HK III|HK-III	hexokinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-96588814-4	chr15	96588733	96588933	+	944.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166456, intron 8 of 15)	intron (NM_001166456, intron 8 of 15)	53129.0	NM_134086	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134791893-4	chr6	134791807	134792007	+	962.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_151454)	promoter-TSS (NR_151454)	-453.0	NR_151454	105242798.0	Mm.398227	NR_151454		1700055D16Rik	-	RIKEN cDNA 1700055D16 gene	ncRNA	0.891014622464045	1.18573258476001	0.738265332011067	0.934303208323668	0.897568796375174	1.19552365825345	2.01606960320393	1.60817265794648	2.30384006100392	0.0890609724638035	0.460054627276427
Merged-chr2-52073366-2	chr2	52073266	52073466	+	927.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355414, intron 2 of 35)	CpG-8094	529.0	NM_175238	51869.0	Mm.254530	NM_175238	ENSMUSG00000036202	Rif1	5730435J01Rik|6530403D07Rik|AU016181|AW549474|D2Ertd145e	replication timing regulatory factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-90242029-4	chr11	90241959	90242159	+	801.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-7417.0	NM_026178	67468.0	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-108005312-2	chr5	108005212	108005412	+	962.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18235.0	NM_026062	67266.0	Mm.277897	NM_026062	ENSMUSG00000029270	Fam69a	2900024C23Rik|AI315274	family with sequence similarity 69, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-94615403-4	chr9	94615222	94615422	+	733.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA4|LINE|L1	-54570.0	NM_177909	331004.0	Mm.326125	NM_177909	ENSMUSG00000031129	Slc9a9	5730527A11Rik|9930105B05|AI854429|Nhe9	solute carrier family 9 (sodium/hydrogen exchanger), member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-133635746-4	chr7	133635648	133635848	+	927.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1927.0	NM_178115	214764.0	Mm.174044	NM_145995	ENSMUSG00000039990	Edrf1	2700050L05Rik|AU022667|AW558805	erythroid differentiation regulatory factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153234944-3	chr2	153234840	153235040	+	925.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018807, intron 2 of 2)	Charlie15a|DNA|hAT-Charlie	6418.0	NM_018807	54711.0	Mm.103199	NM_018807	ENSMUSG00000051413	Plagl2	AU018672|AW552839|mKIAA0198	pleiomorphic adenoma gene-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-36692647-4	chr16	36692527	36692727	+	886.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1351.0	NM_001285788	106347.0	Mm.17807	NM_134109	ENSMUSG00000022900	Ildr1	AU041483|AU044638	immunoglobulin-like domain containing receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-10396727-2	chr17	10396627	10396827	+	633.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59489.0	NR_077239	319750.0	Mm.383485	NR_077237	ENSMUSG00000089633	A230009B12Rik	-	RIKEN cDNA A230009B12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99031512-4	chr15	99031382	99031582	+	857.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009448, intron 1 of 3)	PB1D9|SINE|Alu	1591.0	NM_009448	22146.0	Mm.88212	NM_009448	ENSMUSG00000043091	Tuba1c	M[a]6|Tuba6	tubulin, alpha 1C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129627071-1	chr2	129626971	129627171	+	1000.0	f1_c57bl6.idr	intron (NM_001355158, intron 7 of 8)	intron (NM_001355158, intron 7 of 8)	31609.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	1.92743066547253	1.22983627615926	0.617176135368973	0.606140579665024	1.29988961476063	0.634308091431627	0.620294498007362	1.27203427435887	-0.863958831671422	0.591364135395056	0.969914559899697
Merged-chr5-18036431-4	chr5	18036331	18036531	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	73861.0	NM_001081143	242851.0	Mm.332230	NM_001081143	ENSMUSG00000028777	Gnat3	Ggust|Gtn	guanine nucleotide binding protein, alpha transducing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133166450-1	chr4	133166350	133166550	+	1000.0	f0_balb.idr	intron (NM_153423, intron 1 of 8)	intron (NM_153423, intron 1 of 8)	-29205.0	NR_105984	102466215.0		NR_105984	ENSMUSG00000099202	Mir7017	Gm27945|mmu-mir-7017	microRNA 7017	ncRNA	0.0492594818339181	0.0731403257823554	0.0654083708046104	0.249557488293454	0.789188992841305	0.0748715710591599	0.06712108948177	1.11929667343346	3.5184501066209	0.0956876020382319	1
Merged-chr14-75722240-4	chr14	75722133	75722333	+	901.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177381, intron 15 of 22)	intron (NM_177381, intron 15 of 22)	32260.0	NM_177381	338337.0	Mm.86507	NM_177381	ENSMUSG00000034893	Cog3	E430004N23	component of oligomeric golgi complex 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-50630640-4	chr16	50630558	50630758	+	863.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040566, intron 3 of 4)	intron (NR_040566, intron 3 of 4)	-39504.0	NM_027046	69339.0	Mm.422869	NM_027046	ENSMUSG00000050685	Ccdc54	1700007N18Rik|AI644412|BB013989|NYD-SP17	coiled-coil domain containing 54	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99424842-2	chr15	99424746	99424946	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001884, intron 8 of 12)	intron (NM_001001884, intron 8 of 12)	31627.0	NM_001171035	110213.0	Mm.16769	NM_026669	ENSMUSG00000023010	Tmbim6	5031406P05Rik|Bi1|Tegt	transmembrane BAX inhibitor motif containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-91099072-4	chr1	91098975	91099175	+	947.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008515, intron 10 of 22)	intron (NM_008515, intron 10 of 22)	45631.0	NM_001310732	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	-0.251232761459771	-0.233222475719527	-0.239076278126872	-0.243623216496818	-0.250095826835245	0.567595788064635	0.508534836666534	-0.242826915968187	3.98290212197426	0.101885115045999	1
Merged-chr4-9644319-2	chr4	9644219	9644419	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177852)	promoter-TSS (NM_001177852)	-602.0	NM_001177852	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-59339845-4	chr2	59339628	59339828	+	929.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 15 of 20)	intron (NM_175464, intron 15 of 20)	46954.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-84354222-4	chr17	84354114	84354314	+	871.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183021, intron 26 of 37)	L1M4c|LINE|L1	111994.0	NM_183021	240174.0	Mm.246767	NM_177826	ENSMUSG00000024251	Thada	6530405K19|A930021O22|AU019899|BC052885|GITA	thyroid adenoma associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-41868159-4	chr10	41868038	41868238	+	878.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162908, intron 1 of 9)	Lx9|LINE|L1	-19301.0	NM_001013370	140742.0	Mm.139418	NM_001013370	ENSMUSG00000038332	Sesn1	1110002G11Rik|AU044290|Pa26|Sest1	sestrin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84236191-4	chr8	84236100	84236300	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172503, intron 1 of 13)	intron (NM_172503, intron 1 of 13)	842.0	NM_172503	212168.0	Mm.117094	NM_172503	ENSMUSG00000035671	Zswim4	D330002I24|E130119J17Rik	zinc finger SWIM-type containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-41487254-6	chr13	41487125	41487325	+	917.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001111324, exon 1 of 8)	5' UTR (NM_001111324, exon 1 of 8)	135.0	NM_001111324	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-57293009-2	chr17	57292909	57293109	+	755.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163816, intron 1 of 25)	MLT1F1|LTR|ERVL-MaLR	13909.0	NM_001163815	22324.0	Mm.248172	NM_011691	ENSMUSG00000034116	Vav1	Vav|vav-T	vav 1 oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-79696733-4	chr7	79696650	79696850	+	993.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029835, exon 22 of 22)	exon (NM_029835, exon 22 of 22)	17436.0	NM_010626	16576.0	Mm.101633	NM_010626	ENSMUSG00000050382	Kif7	-	kinesin family member 7	protein-coding	-0.270044353026949	0.223825352901939	0.293171214863405	-0.264590269997416	-0.00446670542064719	-0.256054915370117	-0.260354743743889	-0.264015394272694	-2.03774940818866	0.410091113239826	1
Merged-chr6-120837329-2	chr6	120837229	120837429	+	683.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153516, intron 1 of 6)	intron (NM_153516, intron 1 of 6)	1099.0	NM_153516	94044.0	Mm.27990	NM_153516	ENSMUSG00000009112	Bcl2l13	BCL-RAMBO|E430016C20Rik|Mil-1|Mil1	BCL2-like 13 (apoptosis facilitator)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-28188346-4	chr11	28188238	28188438	+	951.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	395986.0	NM_001166661	216613.0	Mm.93759	NM_181577	ENSMUSG00000032878	Ccdc85a	-	coiled-coil domain containing 85A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-78983877-2	chr11	78983777	78983977	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010708, intron 1 of 10)	intron (NM_010708, intron 1 of 10)	1047.0	NM_001159301	16859.0	Mm.341434	NM_010708	ENSMUSG00000001123	Lgals9	AA407335|AI194909|AI265545|LGALS35|Lgals5|gal-9|galectin-9	lectin, galactose binding, soluble 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-117962882-5	chr2	117962745	117962945	+	893.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_126479, intron 8 of 9)	MTD|LTR|ERVL-MaLR	140917.0	NR_040631	73938.0	Mm.399107	NR_040631	ENSMUSG00000086221	4930412B13Rik	-	RIKEN cDNA 4930412B13 gene	ncRNA	0.501783045892819	0.531131036864207	0.714516424836397	0.694235473449247	1.02839928759971	1.31533864120064	1.25506666341426	0.697797561770282	2.96180411973278	0.0709585764006624	1
Merged-chr2-26446780-2	chr2	26446680	26446880	+	942.125	f1_balb.idr|f1_c57bl6.idr	intron (NR_152209, intron 1 of 2)	intron (NR_152209, intron 1 of 2)	856.0	NR_152207	100125929.0	Mm.392411	NR_152207		0610009E02Rik	-	RIKEN cDNA 0610009E02 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69395442-2	chr11	69395344	69395544	+	825.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_030083)	promoter-TSS (NM_030083)	-98.0	NM_001045525	327951.0	Mm.415669	NM_001045525	ENSMUSG00000044795	Cyb5d1	Gm740	cytochrome b5 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-13551985-2	chr9	13551885	13552085	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TAG)n|Simple_repeat|Simple_repeat	-68004.0	NM_001013813	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-61112503-2	chr14	61112403	61112603	+	940.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25954.0	NM_172809	50720.0	Mm.440703	NM_015788	ENSMUSG00000048279	Sacs	A230052M14|DNAJC29|E130115J16Rik	sacsin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-47515240-4	chr14	47515154	47515354	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027414, intron 4 of 5)	intron (NR_027414, intron 4 of 5)	42693.0	NM_001146085	78938.0	Mm.11935	NM_030236	ENSMUSG00000037536	Fbxo34	2900057B08Rik|5830426G16Rik	F-box protein 34	protein-coding	4.58782883789353	4.60150097816739	4.3497569325903	3.60355650817424	4.39033735813267	5.3998041586531	4.43711724291981	3.94078220324393	0.388414528115739	0.38449266833335	0.875517558686467
Merged-chr16-38763701-4	chr16	38763621	38763821	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019804, intron 5 of 6)	intron (NM_019804, intron 5 of 6)	21462.0	NM_001285793	56375.0	Mm.182377	NM_019804	ENSMUSG00000022793	B4galt4	9130402O08Rik|B4galt-IV|b4Gal-T4|beta4Gal-T4|beta4GalT-IV	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-112270227-2	chr2	112270127	112270327	+	638.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133649, intron 1 of 24)	B4A|SINE|B4	3913.0	NM_133649	107723.0	Mm.491155	NM_133648	ENSMUSG00000027130	Slc12a6	9530023I19Rik|KCC3|gaxp	solute carrier family 12, member 6	protein-coding	-0.769938826265701	-0.761071690399788	-0.325789184709368	-0.76623287824053	-0.629473380952307	-0.760412082634388	-0.443161213381374	-0.765841626414752	-0.068127887123853	0.980676001781787	1
Merged-chr1-177443236-5	chr1	177443162	177443362	+	913.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001355101, exon 2 of 4)	5' UTR (NM_001355101, exon 2 of 4)	911.0	NM_001355100	30928.0	Mm.330700	NM_013915	ENSMUSG00000063659	Zbtb18	RP58|Zfp238|Znf238.|zfp-238	zinc finger and BTB domain containing 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-68610937-2	chr14	68610837	68611037	+	826.833374	f1_balb.idr|f1_c57bl6.idr	exon (NM_183366, exon 19 of 22)	exon (NM_183366, exon 19 of 22)	-28865.0	NM_021475	58860.0	Mm.36742	NM_021475	ENSMUSG00000022057	Adamdec1	2210414L24Rik|AI574231|Dcsn	ADAM-like, decysin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-66896105-2	chr1	66896005	66896205	+	913.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1|SINE|Alu	-32796.0	NM_007381	11363.0	Mm.2445	NM_007381	ENSMUSG00000026003	Acadl	AA960361|AU018452|C79855|LCAD	acyl-Coenzyme A dehydrogenase, long-chain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-71924244-3	chr2	71924134	71924334	+	896.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER5A|DNA|hAT-Charlie	49330.0	NM_001360002	228026.0	Mm.34411	NM_172665	ENSMUSG00000006494	Pdk1	B830012B01|D530020C15Rik	pyruvate dehydrogenase kinase, isoenzyme 1	protein-coding	3.89162757979729	3.64116295607665	2.88028555571881	4.76054475814695	1.90651415812171	1.36403514210395	1.29793001172101	1.55519357257517	-4.64177715770016	7.85786086243684e-07	5.33652535627456e-05
Merged-chr19-57198130-1	chr19	57198030	57198230	+	582.0	f0_balb.idr	promoter-TSS (NM_001290816)	promoter-TSS (NM_001290816)	-499.0	NM_001290816	226251.0	Mm.217161	NM_178688	ENSMUSG00000025085	Ablim1	2210411C18Rik|2610209L21Rik|4833406P10Rik|9330196J19Rik|AV079770|AW060987|AW215784|Limab1|mKIAA0059	actin-binding LIM protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-44829481-2	chr18	44829381	44829581	+	755.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163013, intron 1 of 29)	intron (NM_001163013, intron 1 of 29)	816.0	NM_001163013	240255.0	Mm.244482	NM_001163013	ENSMUSG00000034653	Ythdc2	3010002F02Rik|BC037178	YTH domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-163930575-3	chr1	163930473	163930673	+	959.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286003, intron 1 of 13)	intron (NM_001286003, intron 1 of 13)	808.0	NM_028776	240880.0	Mm.389213	NM_028776	ENSMUSG00000026584	Scyl3	1200016D23Rik|6030457O16|AW214499|Pace1	SCY1-like 3 (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120571923-2	chr11	120571823	120572023	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011032, intron 1 of 10)	intron (NM_011032, intron 1 of 10)	1330.0	NM_011032	18453.0	Mm.16660	NM_011032	ENSMUSG00000025130	P4hb	ERp59|PDI|Pdia1|Thbp	prolyl 4-hydroxylase, beta polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167495425-2	chr2	167495325	167495525	+	727.727295	f1_balb.idr|f1_c57bl6.idr	intron (NM_030743, intron 1 of 7)	intron (NM_030743, intron 1 of 7)	-2551.0	NM_001356523	263876.0	Mm.34342	NM_170756	ENSMUSG00000047030	Spata2	AI504642|mKIAA0757	spermatogenesis associated 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-88296282-2	chr7	88296182	88296382	+	748.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009982, intron 2 of 6)	intron (NM_009982, intron 2 of 6)	18197.0	NM_001311790	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0.312202795142452	-0.207532264916793	-0.211714396907448	-0.214930096268231	-0.0811736026383873	0.271362470872142	-0.210793374455945	-0.056428957006612	0.396512311715036	0.861737392233783	1
Merged-chr1-89646809-3	chr1	89646704	89646904	+	744.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037136, intron 6 of 16)	intron (NM_001037136, intron 6 of 16)	37088.0	NR_015540	74403.0	Mm.444291	NR_015540		4933400F21Rik	1700091C04Rik|4930565K10Rik	RIKEN cDNA 4933400F21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-89643189-2	chr6	89643089	89643289	+	964.125	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001178058)	promoter-TSS (NM_001178058)	-799.0	NM_001178060	232223.0	Mm.229332	NM_153162	ENSMUSG00000000811	Txnrd3	AI196535|TGR|TR2	thioredoxin reductase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16619049-3	chr7	16618904	16619104	+	890.861084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_136929, intron 1 of 2)	CpG	-4011.0	NM_172739	232906.0	Mm.28646	NM_172739	ENSMUSG00000058230	Arhgap35	6430596G11Rik|AI841135|Grlf1|mKIAA1722|p190A|p190RhoGAP	Rho GTPase activating protein 35	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-48962772-4	chr13	48962680	48962880	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033268, intron 1 of 17)	intron (NM_001033268, intron 1 of 17)	5048.0	NM_001033268	218236.0	Mm.426571	NM_001033268	ENSMUSG00000038014	Fam120a	C9orf10|Ossa	family with sequence similarity 120, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-6270483-3	chr17	6270385	6270585	+	854.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033178)	promoter-TSS (NM_001033178)	15.0	NM_001033178	77106.0	Mm.381893	NM_001033178	ENSMUSG00000038141	Tmem181a	5930418K15Rik|C76977|Gpr178|Tmem181|mKIAA1423	transmembrane protein 181A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-34700392-4	chr16	34700298	34700498	+	949.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172824, intron 5 of 12)	intron (NM_172824, intron 5 of 12)	9782.0	NM_172824	239839.0	Mm.272045	NM_172824	ENSMUSG00000022833	Ccdc14	G630039H03Rik	coiled-coil domain containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81000823-2	chr10	81000723	81000923	+	914.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010319, intron 1 of 3)	MTEb|LTR|ERVL-MaLR	542.0	NM_001038655	14708.0	Mm.222496	NM_010319	ENSMUSG00000048240	Gng7	AI840417	guanine nucleotide binding protein (G protein), gamma 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141480025-2	chr7	141479925	141480125	+	601.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252588, intron 1 of 7)	B1_Mm|SINE|Alu	3645.0	NM_001252588	64540.0	Mm.489619	NM_053082	ENSMUSG00000025511	Tspan4	AI325509|AI746565|D130042I01Rik|NAG-2|Tm4sf7|Tspan-4	tetraspanin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-156421687-4	chr2	156421591	156421791	+	841.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013510, intron 1 of 21)	intron (NM_013510, intron 1 of 21)	782.0	NM_001291123	13821.0	Mm.20852	NM_013510	ENSMUSG00000027624	Epb41l1	4.1N|Epb4.1l1|NBL1|mKIAA0338	erythrocyte membrane protein band 4.1 like 1	protein-coding	1.77336604504626	1.14700016391456	3.10056960360247	1.08983639952829	2.13132133951338	1.670816464901	2.32890986237202	1.88928945438403	-0.164721457383292	0.882176335565699	0.998431161219273
Merged-chr18-46378765-4	chr18	46378666	46378866	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66838.0	NM_001160399	240261.0	Mm.329416	NM_001160399	ENSMUSG00000071855	Ccdc112	8430438M01Rik|AW108467	coiled-coil domain containing 112	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-80413418-4	chr18	80413320	80413520	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026295, intron 12 of 12)	intron (NM_026295, intron 12 of 12)	-49166.0	NM_001190373	240444.0	Mm.279568	NM_001190373	ENSMUSG00000059852	Kcng2	AA591524	potassium voltage-gated channel, subfamily G, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-103347193-4	chr9	103347049	103347249	+	952.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176979, intron 27 of 27)	RSINE1|SINE|B4	17830.0	NM_001134427	321022.0	Mm.261025	NM_175565	ENSMUSG00000032803	Cdv3	2510010F10Rik|C230084J24Rik|C79446|TPP36	carnitine deficiency-associated gene expressed in ventricle 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-103869091-3	chr13	103868981	103869181	+	716.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005868, intron 4 of 26)	intron (NM_001005868, intron 4 of 26)	51505.0	NM_001289473	59079.0	Mm.277354	NM_021563	ENSMUSG00000021709	Erbin	1700028E05Rik|Erbb2ip|mKIAA1225	Erbb2 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-75558756-2	chr17	75558656	75558856	+	594.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	-6810.0	NM_001357860	72722.0	Mm.24641	NM_133747	ENSMUSG00000002017	Fam98a	2810405J04Rik|AL024114	family with sequence similarity 98, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-48443941-1	chr14	48443841	48444041	+	580.0	f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-2182.0	NM_001310584	218989.0	Mm.85211	NM_172600	ENSMUSG00000036339	Tmem260	5930435P15|6720456H20Rik	transmembrane protein 260	protein-coding	1.67197264107377	2.73493061542323	3.46299871066737	2.87230164441713	2.45430038798546	2.75521433209769	2.7777567574125	2.79363908070013	-0.264606646788047	0.730947107843291	0.998431161219273
Merged-chr4-48593047-4	chr4	48592957	48593157	+	944.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021436, intron 1 of 9)	intron (NM_021436, intron 1 of 9)	7883.0	NM_021436	230157.0	Mm.422686	NM_021436	ENSMUSG00000028347	Tmeff1	A830033E11|M7365|TR-1|Tr1	transmembrane protein with EGF-like and two follistatin-like domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-42837724-4	chr9	42837632	42837832	+	984.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175481, intron 1 of 20)	intron (NM_175481, intron 1 of 20)	106639.0	NM_175481	110637.0	Mm.370291	NM_175481	ENSMUSG00000032017	Grik4	6330551K01Rik|GluK4|GluRgamma1|KA-1|KA1	glutamate receptor, ionotropic, kainate 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-38494883-4	chr18	38494781	38494981	+	854.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	75974.0	NM_001355749	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-34468419-7	chr1	34468284	34468484	+	959.7777710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011206, intron 6 of 14)	intron (NM_011206, intron 6 of 14)	8638.0	NM_011206	19253.0	Mm.361	NM_011206	ENSMUSG00000026126	Ptpn18	FLP1|HSCF|PTP-HSCF|PTP-K1|Ptpk1	protein tyrosine phosphatase, non-receptor type 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-24486253-4	chr5	24486145	24486345	+	801.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359881, intron 9 of 15)	intron (NM_001359881, intron 9 of 15)	34068.0	NM_139153	213990.0	Mm.250703	NM_139153	ENSMUSG00000023353	Agap3	AGAP-3|AV028425|Centg3|Crag|Crag.|MRIP-1|cnt-g3	ArfGAP with GTPase domain, ankyrin repeat and PH domain 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-115789295-4	chr3	115789202	115789402	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74247.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-76049831-3	chr2	76049749	76049949	+	817.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081033, intron 14 of 19)	intron (NM_001081033, intron 14 of 19)	-67882.0	NM_030188	78802.0	Mm.282339	NM_030188	ENSMUSG00000075271	Ttc30a1	4930506L13Rik	tetratricopeptide repeat domain 30A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-98811765-2	chr12	98811665	98811865	+	682.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081191, intron 31 of 43)	intron (NM_001081191, intron 31 of 43)	40743.0	NM_001160108	75553.0	Mm.25549	NM_029334	ENSMUSG00000021012	Zc3h14	1010001P15Rik|1700016A15Rik|2700069A02Rik|AU014748	zinc finger CCCH type containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-16042267-4	chr16	16042147	16042347	+	944.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355731, intron 6 of 18)	Lx2|LINE|L1	104604.0	NM_001355731	224008.0	Mm.244703	NM_146068	ENSMUSG00000041974	Spidr	2310008H04Rik|Kiaa0146	scaffolding protein involved in DNA repair	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-127340551-2	chr2	127340451	127340651	+	785.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172539, intron 1 of 8)	intron (NM_172539, intron 1 of 8)	-1085.0	NM_001291003	215095.0	Mm.31313	NM_172539	ENSMUSG00000050468	Astl	7420700F21|C87576|Sas1b	astacin-like metalloendopeptidase (M12 family)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-31118660-2	chr6	31118560	31118760	+	795.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_110471, intron 3 of 3)	intron (NR_110471, intron 3 of 3)	-55567.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-24120709-2	chr18	24120609	24120809	+	731.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172625, intron 1 of 4)	MTE-int|LTR|ERVL-MaLR	1110.0	NM_172625	225280.0	Mm.258973	NM_172625	ENSMUSG00000047989	Ino80c	D030070L09Rik	INO80 complex subunit C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-61449430-1	chr18	61449330	61449530	+	550.0	f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	35177.0	NR_045419	442846.0	Mm.417648	NR_045419		A530050N04Rik	-	RIKEN cDNA A530050N04 gene	ncRNA	-0.472499084996647	-0.577769841501818	-0.932280005509563	-0.934409331640792	-0.937410007762487	-0.920698152219871	-0.93167041520348	-0.934037691524213	-2.90038409914852	0.344376840976206	1
Merged-chr11-99165108-4	chr11	99164993	99165193	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10016.0	NM_007719	12775.0	Mm.2932	NM_007719	ENSMUSG00000037944	Ccr7	CC-CKR-7|CCR-7|CD197|Cdw197|Cmkbr7|EBI1|Ebi1h	chemokine (C-C motif) receptor 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-56822290-4	chr19	56822160	56822360	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-3949.0	NM_001002238	83561.0	Mm.247541	NM_031387	ENSMUSG00000025081	Tdrd1	MTR-1	tudor domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-89267968-6	chr9	89268001	89268201	+	991.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56717.0	NM_001359993	107885.0	Mm.486274	NM_026829	ENSMUSG00000066442	Mthfs	1110034I12Rik|2310020H23Rik|AI119695	5, 10-methenyltetrahydrofolate synthetase	protein-coding	-1.31349849087795	-1.28274354783242	-1.29349452597086	-1.3023256995151	-1.3130151546297	-1.28041376602105	-0.694015972326031	-1.30074492367298	2.57396649482007	0.456321314346772	1
Merged-chr5-96206902-4	chr5	96206805	96207005	+	819.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3210.0	NM_001039084	94061.0	Mm.295499	NM_053158	ENSMUSG00000029486	Mrpl1	2410002L03Rik|5830418D04Rik|AI462572|L1mt	mitochondrial ribosomal protein L1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46432470-3	chr8	46432374	46432574	+	882.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38563.0	NM_007981	14081.0	Mm.210323	NM_007981	ENSMUSG00000018796	Acsl1	Acas|Acas1|Acs|FACS|Facl2|LACS 1|LACS1	acyl-CoA synthetase long-chain family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-94359461-2	chr11	94359361	94359561	+	788.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029600, intron 21 of 30)	intron (NM_029600, intron 21 of 30)	31460.0	NM_146024	71452.0	Mm.141054	NM_027799	ENSMUSG00000020864	Ankrd40	1110011C06Rik|5530600A18Rik|Gcap15	ankyrin repeat domain 40	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-51552684-2	chr5	51552584	51552784	+	975.916626	f1_balb.idr|f1_c57bl6.idr	intron (NR_132764, intron 1 of 12)	intron (NR_132764, intron 1 of 12)	1237.0	NR_027710	19017.0	Mm.259072	NM_008904	ENSMUSG00000029167	Ppargc1a	A830037N07Rik|Gm11133|PGC-1|PPARGC-1-alpha|Pgc-1alpha|Pgc1|Pgco1|Ppargc1	peroxisome proliferative activated receptor, gamma, coactivator 1 alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4332901-4	chr19	4332798	4332998	+	988.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001984, intron 12 of 20)	intron (NM_001001984, intron 12 of 20)	-26676.0	NM_001290818	110355.0	Mm.254144	NM_130863	ENSMUSG00000024858	Grk2	Adrbk-1|Adrbk1|Bark-1|beta ARK|betaARK1	G protein-coupled receptor kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141437653-4	chr7	141437552	141437752	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001360523)	TTS (NM_001360523)	222.0	NM_026646	68267.0	Mm.33729	NM_026646	ENSMUSG00000019082	Slc25a22	1300006L01Rik|AI060884|Gc1	solute carrier family 25 (mitochondrial carrier, glutamate), member 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-124007713-4	chr8	124007626	124007826	+	863.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357315, intron 3 of 4)	RMER16|LTR|ERVK	13330.0	NM_001357315	102162.0	Mm.291777	NM_133966	ENSMUSG00000038697	Taf5l	1110005N04Rik|AI849020	TATA-box binding protein associated factor 5 like	protein-coding	2.60041119633485	2.01361979915361	1.28563666805257	2.88431641638046	2.81946281862688	2.19308310598337	2.25565552999376	1.26231737333369	-0.183975775795631	0.856948027565004	0.998431161219273
Merged-chr6-8343459-2	chr6	8343359	8343559	+	747.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001302354, intron 2 of 3)	MER91B|DNA|hAT-Tip100	84171.0	NM_001302353	100036521.0	Mm.446106	NM_001302353	ENSMUSG00000089862	Umad1	Gm16039	UMAP1-MVP12 associated (UMA) domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-43914730-4	chr1	43914623	43914823	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19271.0	NM_001310540	22019.0	Mm.401675	NM_009418	ENSMUSG00000041763	Tpp2	TPP-2|TppII	tripeptidyl peptidase II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-66210091-4	chr2	66209996	66210196	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001290669, exon 20 of 28)	exon (NM_001290669, exon 20 of 28)	46521.0	NM_001047604	73668.0	Mm.250868	NM_001047604	ENSMUSG00000034848	Ttc21b	2410066K11Rik|Thm1|aln|mKIAA1992	tetratricopeptide repeat domain 21B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-21186790-7	chr2	21186682	21186882	+	935.714294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027728, intron 4 of 4)	intron (NM_027728, intron 4 of 4)	18583.0	NM_027728	71233.0	Mm.27658	NM_027728	ENSMUSG00000026679	Enkur	4933434I06Rik|AU016229	enkurin, TRPC channel interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-119031038-2	chr10	119030938	119031138	+	576.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_152787, intron 3 of 3)	intron (NR_152787, intron 3 of 3)	19461.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19491943-2	chr7	19491843	19492043	+	773.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	16388.0	NM_177692	232946.0	Mm.64557	NM_177692	ENSMUSG00000057667	Bloc1s3	BC043666|Blos3|E230011O18|rp	biogenesis of lysosomal organelles complex-1, subunit 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-12422510-4	chr7	12422418	12422618	+	838.830383	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033820)	promoter-TSS (NM_001033820)	-27.0	NM_001033820	619331.0	Mm.361832	NM_001033820	ENSMUSG00000034071	Zfp551	9630004E07Rik|Znf551	zinc fingr protein 551	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118162499-2	chr11	118162399	118162599	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33280.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-84562058-4	chr1	84561961	84562161	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152915, intron 4 of 12)	intron (NM_152915, intron 4 of 12)	-133778.0	NR_039588	100628595.0		NR_039588	ENSMUSG00000093254	Mir5126	mir-5126|mmu-mir-5126|mu-mir-5126	microRNA 5126	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34887720-4	chr17	34887626	34887826	+	805.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTRIS4|LTR|ERV1	-5626.0	NM_013484	12263.0	Mm.283217	NM_013484	ENSMUSG00000024371	C2	-	complement component 2 (within H-2S)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-6777476-2	chr17	6777376	6777576	+	860.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009510, intron 1 of 12)	intron (NM_009510, intron 1 of 12)	5304.0	NM_009510	22350.0	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56023437-5	chr17	56023295	56023495	+	912.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013664, intron 1 of 9)	intron (NM_013664, intron 1 of 9)	13242.0	NM_013664	20405.0	Mm.1773	NM_013664	ENSMUSG00000003200	Sh3gl1	C77078|EEN|SH3P8|Sh3d2b	SH3-domain GRB2-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-105180840-1	chr11	105180740	105180940	+	575.0	f0_balb.idr	promoter-TSS (NM_001294334)	promoter-TSS (NM_001294334)	593.0	NR_027956	73431.0	Mm.351426	NM_028539		1700052K11Rik	AI840954	RIKEN cDNA 1700052K11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124111216-3	chr5	124111123	124111323	+	866.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1098.0	NM_001361482	66627.0	Mm.7050	NM_025671	ENSMUSG00000023707	Ogfod2	1300006G11Rik|5730405M13Rik|AU041636|AW552395	2-oxoglutarate and iron-dependent oxygenase domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-98180367-2	chr5	98180267	98180467	+	671.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029947)	promoter-TSS (NM_029947)	-502.0	NM_029947	77630.0	Mm.332511	NM_029947	ENSMUSG00000035456	Prdm8	4930565F05Rik|PFM5	PR domain containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-24602482-2	chr18	24602382	24602582	+	848.0714109999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_139143, intron 1 of 9)	intron (NM_139143, intron 1 of 9)	1335.0	NM_139143	106957.0	Mm.21688	NM_139143	ENSMUSG00000024270	Slc39a6	Ermelin|Zip6	solute carrier family 39 (metal ion transporter), member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-3002472-2	chr18	3002372	3002572	+	584.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	120940.0	NM_001167539	100312476.0	Mm.480293	NM_001167539	ENSMUSG00000091539	Vmn1r238	-	vomeronasal 1 receptor, 238	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30412396-2	chr2	30412296	30412496	+	785.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007760, intron 2 of 13)	intron (NM_007760, intron 2 of 13)	3352.0	NM_007760	12908.0	Mm.20396	NM_007760	ENSMUSG00000026853	Crat	AW107812|CARAT	carnitine acetyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-59728751-2	chr9	59728651	59728851	+	958.7000119999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	20987.0	NM_001033498	546134.0	Mm.297580	NM_001033498	ENSMUSG00000074259	Gramd2	BC064463|Gramd2a	GRAM domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128035497-4	chr10	128035384	128035584	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001113199, exon 1 of 9)	5' UTR (NM_001113199, exon 1 of 9)	138.0	NM_001113199	17938.0	Mm.3746	NM_013608	ENSMUSG00000061315	Naca	AL022831|AL024382|Gm1878|mKIAA0363|skNAC	nascent polypeptide-associated complex alpha polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-72232384-1	chr4	72232284	72232484	+	632.0	f0_balb.idr	Intergenic	Intergenic	31140.0	NR_027923	68285.0	Mm.37541	NR_027923		C630043F03Rik	AI851307	RIKEN cDNA C630043F03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80335256-2	chr7	80335156	80335356	+	777.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133952, intron 6 of 19)	intron (NM_133952, intron 6 of 19)	4963.0	NM_133952	101869.0	Mm.243024	NM_133952	ENSMUSG00000030533	Unc45a	AW538196	unc-45 myosin chaperone A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-162740121-4	chr1	162740039	162740239	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081290, intron 1 of 34)	CpG	417.0	NM_001081290	226562.0	Mm.245446	NM_001081290	ENSMUSG00000040225	Prrc2c	1810043M20Rik|9630039I18Rik|A630006J20|Bat2d|Bat2d1|Bat2l2|E130112L15Rik|Prrc3|mKIAA1096	proline-rich coiled-coil 2C	protein-coding	5.30591706693565	5.44121493558634	5.52209805097154	4.48983966025165	5.66637196653578	5.71789733003475	5.98148021276287	5.41367335222141	0.532468074199373	0.0756855593160614	0.416803246943438
Merged-chr3-90249432-2	chr3	90249332	90249532	+	963.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_013901, exon 3 of 4)	exon (NM_013901, exon 3 of 4)	1240.0	NM_013901	30791.0	Mm.294709	NM_013901	ENSMUSG00000052310	Slc39a1	Zip1|Zirtl	solute carrier family 39 (zinc transporter), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122938733-3	chr8	122938636	122938836	+	905.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 2 of 12)	intron (NM_001081379, intron 2 of 12)	90362.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-30023573-4	chr16	30023478	30023678	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045878, intron 3 of 3)	intron (NR_045878, intron 3 of 3)	14911.0	NR_033631	100043102.0	Mm.30797	NR_033631	ENSMUSG00000097184	4632428C04Rik	Gm4231	RIKEN cDNA 4632428C04 gene	ncRNA	3.37196419932726	3.40302937134781	4.07252178352696	4.43965600293206	3.61663684915067	3.96950083525785	3.31086443025613	4.24455148890962	-0.101029368286665	0.844292404210165	0.998431161219273
Merged-chr4-150239050-4	chr4	150238944	150239144	+	833.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023119, intron 1 of 11)	intron (NM_023119, intron 1 of 11)	1720.0	NM_001025388	433182.0	Mm.70666	NM_001025388	ENSMUSG00000059040	Eno1b	EG433182|Eno1|Gm5506	enolase 1B, retrotransposed	protein-coding	2.09276927449485	1.63376453483867	1.42144493485578	1.97602513691572	1.16880456944487	1.03754097183408	1.24539753059258	1.98708958870034	-1.21216812366641	0.300417013252339	0.801963340127147
Merged-chr9-90380259-3	chr9	90380151	90380351	+	845.694458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	-109482.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-78203273-2	chr10	78203173	78203373	+	956.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081055, intron 14 of 22)	intron (NM_001081055, intron 14 of 22)	-18124.0	NM_029546	110816.0	Mm.103522	NM_029546	ENSMUSG00000032834	Pwp2	6530411D08Rik|Pwp2h|wdp103	PWP2 periodic tryptophan protein homolog (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-96872052-1	chr1	96871952	96872152	+	559.0	f0_balb.idr	exon (NM_172658, exon 1 of 13)	exon (NM_172658, exon 1 of 13)	119.0	NM_172658	227394.0	Mm.11662	NM_172658	ENSMUSG00000040693	Slco4c1	9530051F04|C330017E21Rik|OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20|oatp-R	solute carrier organic anion transporter family, member 4C1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-101172880-4	chr4	101172761	101172961	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146145, intron 10 of 24)	intron (NM_146145, intron 10 of 24)	92421.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90549583-3	chr2	90549474	90549674	+	762.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	RSINE1|SINE|B4	31073.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	-0.654203750232095	-0.906716396103307	-0.345559305711495	-0.917224069321165	-0.920361906015164	-0.904044330727832	-0.914362853589523	-0.916835673576791	-2.96158595613085	0.328953899946767	1
Merged-chr14-30550526-2	chr14	30550388	30550588	+	619.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009388, intron 1 of 13)	intron (NM_009388, intron 1 of 13)	1357.0	NM_009388	21881.0	Mm.290692	NM_009388	ENSMUSG00000021957	Tkt	p68	transketolase	protein-coding	1.60625633785934	2.62690387285158	1.1069491396158	1.97310470636611	1.6202508242454	2.6476356716823	1.11334896652828	1.98416214923229	0.0369677214258987	0.973710763749579	0.998431161219273
Merged-chr11-86624488-4	chr11	86624400	86624600	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356531, intron 7 of 11)	intron (NM_001356531, intron 7 of 11)	-40342.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-158177184-4	chr2	158177083	158177283	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-14825.0	NR_036606	73399.0	Mm.416861	NR_036606	ENSMUSG00000078957	1700060C20Rik	-	RIKEN cDNA 1700060C20 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-39387221-3	chr10	39387120	39387320	+	942.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122893, intron 1 of 13)	intron (NM_001122893, intron 1 of 13)	17421.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-83534511-2	chr9	83534411	83534611	+	743.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13827.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-44415443-1	chr11	44415343	44415543	+	1000.0	f0_c57.idr	TTS (NM_001303244)	TTS (NM_001303244)	15380.0	NM_001303244	16160.0	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	5.29591682947603	3.63830797126444	5.3456363003267	5.06071440533603	4.83248556414805	5.23709810357195	5.67288634671425	5.050014631648	0.282281380010916	0.461232984258071	0.920953234475195
Merged-chr1-80823352-3	chr1	80823233	80823433	+	685.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64780.0	NM_175291	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140140357-2	chr5	140140257	140140457	+	711.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359027, intron 1 of 6)	intron (NM_001359027, intron 1 of 6)	34561.0	NM_001359027	17120.0	Mm.27250	NM_010752	ENSMUSG00000029554	Mad1l1	AI173502|AW550425|Mad1	MAD1 mitotic arrest deficient 1-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-114494229-3	chr7	114494133	114494333	+	654.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011055, intron 2 of 15)	intron (NM_011055, intron 2 of 15)	68739.0	NR_110407	244209.0	Mm.108037	NM_177382	ENSMUSG00000030670	Cyp2r1	-	cytochrome P450, family 2, subfamily r, polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-66601200-4	chr9	66601097	66601297	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8082.0	NM_001302116	235441.0	Mm.32465	NM_144937	ENSMUSG00000032376	Usp3	AA409661|BC017156	ubiquitin specific peptidase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52573219-4	chr13	52573120	52573320	+	988.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_046069)	promoter-TSS (NR_046069)	5.0	NR_046069	100040572.0	Mm.278873	NR_046069		Gm2848	-	predicted gene 2848	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-107727098-2	chr5	107726998	107727198	+	614.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1293.0	NM_001267621	14581.0	Mm.2078	NM_010278	ENSMUSG00000029275	Gfi1	AW495828|Gfi-1|Pal-1|Pal1	growth factor independent 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-90077612-4	chr3	90077505	90077705	+	998.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022314, intron 2 of 8)	intron (NM_022314, intron 2 of 8)	-1916.0	NM_001253738	59069.0	Mm.240839	NM_022314	ENSMUSG00000027940	Tpm3	TM30nm|TMnm|Tm5NM|Tpm-5|Tpm5|Trop-5|gamma-TM|hTM30nm|hTMnm	tropomyosin 3, gamma	protein-coding	0.960276441936216	0.80703379893334	0.784270653317395	1.28814266894102	1.14905191080081	0.629112607205078	0.622051302174262	1.02381004163563	-0.529635177809257	0.729236229742412	1
Merged-chr5-136253388-2	chr5	136253288	136253488	+	554.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291238, intron 18 of 22)	B4A|SINE|B4	-8448.0	NM_018825	23921.0	Mm.425294	NM_018825	ENSMUSG00000005057	Sh2b2	Aps	SH2B adaptor protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-75062003-2	chr10	75061903	75062103	+	771.714233	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081412, exon 1 of 23)	exon (NM_001081412, exon 1 of 23)	1107.0	NM_001081412	110279.0	Mm.333722	NM_001081412	ENSMUSG00000009681	Bcr	5133400C09Rik|AI561783|AI853148|mKIAA3017	breakpoint cluster region	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135008995-4	chr5	135008902	135009102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001190437)	promoter-TSS (NM_001190437)	-150.0	NM_001190437	68758.0	Mm.389700	NM_145215	ENSMUSG00000040532	Abhd11	1110054D16Rik|A630008N09Rik|Wbscr21	abhydrolase domain containing 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-55838310-4	chr1	55838194	55838394	+	958.31665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-92947.0	NR_045837	329159.0	Mm.98697	NR_045837	ENSMUSG00000099950	9130227L01Rik	-	RIKEN cDNA 9130227L01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115207976-1	chr11	115207876	115208076	+	671.0	f1_c57bl6.idr	intron (NM_001033393, intron 8 of 9)	intron (NM_001033393, intron 8 of 9)	20489.0	NM_001033393	320534.0	Mm.260587	NM_001033393	ENSMUSG00000045980	Tmem104	C630005D06Rik|mFLJ00021	transmembrane protein 104	protein-coding	1.5186449231044	1.95310712082104	1.31877395125965	1.29420072522063	1.40109261956598	2.31628029408653	2.09660695659928	1.29850602933158	1.03966866551896	0.350812390705225	0.851344470809322
Merged-chr7-19692104-4	chr7	19691995	19692195	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110009, intron 2 of 3)	intron (NM_001110009, intron 2 of 3)	564.0	NM_001110009	11812.0	Mm.182440	NM_007469	ENSMUSG00000040564	Apoc1	Apo-CIB|ApoC-IB|apo-CI|apoC-I	apolipoprotein C-I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-21888224-2	chr10	21888124	21888324	+	624.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161845, intron 1 of 13)	intron (NM_001161845, intron 1 of 13)	6040.0	NM_001161845	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-23770320-4	chr11	23770235	23770435	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009044, intron 1 of 9)	intron (NM_009044, intron 1 of 9)	635.0	NM_009044	19696.0	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-89268996-4	chr9	89268893	89269093	+	956.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57609.0	NM_001359993	107885.0	Mm.486274	NM_026829	ENSMUSG00000066442	Mthfs	1110034I12Rik|2310020H23Rik|AI119695	5, 10-methenyltetrahydrofolate synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81168997-4	chr10	81168885	81169085	+	912.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1265.0	NM_021501	59004.0	Mm.34428	NM_021501	ENSMUSG00000004934	Pias4	PIASY|Pias-gamma|Piasg	protein inhibitor of activated STAT 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-74196185-2	chr1	74196085	74196285	+	832.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1554.0	NM_178241	227288.0	Mm.337035	NM_178241	ENSMUSG00000048480	Cxcr1	Il8ra	chemokine (C-X-C motif) receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-92846771-4	chr8	92846677	92846877	+	954.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008610, intron 11 of 12)	intron (NM_008610, intron 11 of 12)	-8556.0	NM_173014	270084.0	Mm.21463	NM_173014	ENSMUSG00000033192	Lpcat2	1-AGPAT 11|A330042H22|Aytl1|Aytl1a|lpafat1|lysoPAFAT|lysoPAFAT/LPCAT2	lysophosphatidylcholine acyltransferase 2	protein-coding	0.846294339966624	0.901901690923987	1.81837708896032	2.02025589424819	1.84435312893905	1.52073325359472	1.11760658297269	1.08758399557093	-0.268758583338945	0.838853448702324	0.998431161219273
Merged-chr13-78201715-3	chr13	78201604	78201804	+	778.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045195, intron 1 of 2)	intron (NR_045195, intron 1 of 2)	-2831.0	NM_010151	13865.0	Mm.439653	NM_010151	ENSMUSG00000069171	Nr2f1	COUP-TF1|COUP-TFI|COUPTFA|EAR-3|EAR3|Erbal3|SVP44|Tcfcoup1	nuclear receptor subfamily 2, group F, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-86890259-2	chr5	86890174	86890374	+	627.75	f0_balb.idr|f1_balb.idr	3' UTR (NM_153598, exon 6 of 6)	3' UTR (NM_153598, exon 6 of 6)	16663.0	NM_153598	100727.0	Mm.281844	NM_153598	ENSMUSG00000029260	Ugt2b34	AI788959	UDP glucuronosyltransferase 2 family, polypeptide B34	protein-coding	0.143376790253433	0.166529779765849	0.159010300365964	0.153166033664483	0.768632662707612	0.168216458317962	1.08613443845504	0.62527365507058	4.33157453731907	0.0317369906299418	1
Merged-chr12-111429197-3	chr12	111429114	111429314	+	898.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289487, intron 12 of 13)	intron (NM_001289487, intron 12 of 13)	11769.0	NM_001289488	74190.0	Mm.248640	NM_028807	ENSMUSG00000021280	Exoc3l4	1200009I06Rik|1600013K19Rik	exocyst complex component 3-like 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-88656182-4	chr8	88656102	88656302	+	970.591675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145857, intron 2 of 12)	intron (NM_145857, intron 2 of 12)	8855.0	NM_145857	257632.0	Mm.222633	NM_145857	ENSMUSG00000055994	Nod2	ACUG|BLAU|CD|Card15|F830032C23Rik|IBD1|Nlrc2	nucleotide-binding oligomerization domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-108153149-3	chr13	108153052	108153252	+	779.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360140, intron 1 of 4)	intron (NM_001360140, intron 1 of 4)	5473.0	NM_001360140	75597.0	Mm.276040	NM_001127346	ENSMUSG00000068184	Ndufaf2	1810058I14Rik|C86051|Ndufa12l|mimitin	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 2	protein-coding	-0.466455822281774	-0.453320393851574	0.0137912788950162	-0.460936171729361	-0.465634001803078	-0.452352852319912	-0.456668590440323	0.287962933469477	0.899130555444809	0.741657924414128	1
Merged-chr15-93398384-4	chr15	93398253	93398453	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175363)	promoter-TSS (NM_175363)	3.0	NM_175363	223828.0	Mm.74208	NM_146062	ENSMUSG00000036167	Pphln1	CR|HSPC206|HSPC232	periphilin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-33337338-3	chr14	33337237	33337437	+	963.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153800, intron 4 of 10)	intron (NM_153800, intron 4 of 10)	73687.0	NM_001310452	26419.0	Mm.21495	NM_016700	ENSMUSG00000021936	Mapk8	AI849689|JNK|JNK1|Prkm8|SAPK1	mitogen-activated protein kinase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55316505-4	chr19	55316403	55316603	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033573)	promoter-TSS (NM_001033573)	446.0	NM_001293686	53611.0	Mm.258637	NM_016862	ENSMUSG00000024983	Vti1a	1110014F16Rik|1110018K19Rik|4921537J05Rik|MVti1|MVti1a|Vti1|Vti1-rp2	vesicle transport through interaction with t-SNAREs 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-25099568-4	chr12	25099464	25099664	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3472.0	NM_010496	15902.0	Mm.34871	NM_010496	ENSMUSG00000020644	Id2	AI255428|C78922|Idb2|bHLHb26	inhibitor of DNA binding 2	protein-coding	5.32517483656094	5.53447440674137	5.59517103249389	5.24683151801288	4.89379869732786	4.66778983620592	5.18607902209604	5.29929288651778	-0.457575070126946	0.124434325192152	0.552368396864051
Merged-chr6-87499080-2	chr6	87498980	87499180	+	937.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037727, intron 1 of 10)	intron (NM_001037727, intron 1 of 10)	-2753.0	NM_175476	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	0.834381223047419	2.05466610192004	1.75804461889806	2.15980574607539	0.838701523618305	0.904690291136385	1.12995584682093	1.82087364116074	-1.72407855408522	0.200616463325732	0.684324202136694
Merged-chr10-99585023-3	chr10	99584896	99585096	+	684.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24175.0	NR_038019	100504202.0	Mm.403801	NR_038019	ENSMUSG00000111962	Gm20110	-	predicted gene, 20110	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101659320-2	chr11	101659220	101659420	+	634.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-6221.0	NM_025404	80981.0	Mm.266840	NM_025404	ENSMUSG00000034936	Arl4d	1110036H21Rik|ARL6|AW456149|Arf4l|Arfl4|Arl5	ADP-ribosylation factor-like 4D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-34593672-2	chr19	34593572	34593772	+	786.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001110517, exon 2 of 2)	exon (NM_001110517, exon 2 of 2)	5755.0	NM_001110517	667373.0	Mm.371956	NM_001101605	ENSMUSG00000079339	Ifit1bl1	Gm14446|Ifit1c	interferon induced protein with tetratricpeptide repeats 1B like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-29208821-2	chr10	29208721	29208921	+	892.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-2822.0	NM_001162537	212448.0	Mm.132789	NM_001162537	ENSMUSG00000004360	9330159F19Rik	-	RIKEN cDNA 9330159F19 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-31290232-7	chr5	31290233	31290433	+	769.257141	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026298, intron 1 of 47)	intron (NM_026298, intron 1 of 47)	781.0	NM_026298	67661.0	Mm.293023	NM_026298	ENSMUSG00000038564	Ift172	4930553F24Rik|Slb|avc1|wim	intraflagellar transport 172	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-155601605-7	chr4	155601509	155601709	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_177186, exon 1 of 9)	5' UTR (NM_177186, exon 1 of 9)	193.0	NM_177186	320541.0	Mm.306018	NM_177186	ENSMUSG00000042202	Slc35e2	A530082C11Rik|AI957035	solute carrier family 35, member E2	protein-coding	5.66296815080487	5.28174440389279	5.64252078690842	4.49736691149975	4.90393470190688	4.90613219670002	5.12579235668393	4.41442021296003	-0.575033669768835	0.100478697610084	0.493266535976181
Merged-chr5-99541763-4	chr5	99541665	99541865	+	936.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 2 of 3)	intron (NR_030692, intron 2 of 3)	187295.0	NR_030692	319818.0	Mm.295233	NR_030692	ENSMUSG00000089809	A930011G23Rik	-	RIKEN cDNA A930011G23 gene	ncRNA	1.48824165840771	1.70779107992636	0.771954928214941	1.37760141638405	1.1970545213099	0.788264620587463	1.43680584237006	0.76334440829645	-1.19652936901623	0.406016843853579	0.89095290927429
Merged-chr1-152577085-2	chr1	152576985	152577185	+	617.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 3 of 17)	intron (NM_016846, intron 3 of 17)	48132.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-60976475-2	chr18	60976375	60976575	+	694.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177407, intron 14 of 17)	intron (NM_177407, intron 14 of 17)	12921.0	NM_001286809	12322.0	Mm.131530	NM_009792	ENSMUSG00000024617	Camk2a	CaMKII|R74975|mKIAA0968	calcium/calmodulin-dependent protein kinase II alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-97347610-2	chr15	97347510	97347710	+	756.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172293, intron 3 of 5)	intron (NM_172293, intron 3 of 5)	-100323.0	NM_001164602	105827.0	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70627205-2	chr8	70627072	70627272	+	796.666626	f0_balb.idr|f1_balb.idr	Intergenic	MERVK26-int|LTR|ERVK	4923.0	NM_011819	23886.0	Mm.31325	NM_011819	ENSMUSG00000038508	Gdf15	MIC-1|NAG-1|SBF	growth differentiation factor 15	protein-coding	1.12183386233115	0.379529927689675	0.562946770706756	0.93786062577917	0.355184922931869	0.381423526434735	0.372956486695535	1.14148501100502	-0.842048771635052	0.647887874462455	1
Merged-chr7-101410772-2	chr7	101410672	101410872	+	803.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001040111, intron 32 of 33)	intron (NM_001040111, intron 32 of 33)	-10919.0	NM_001008548	207728.0	Mm.247564	NM_001008548	ENSMUSG00000030653	Pde2a	CGS-PDE|cGSPDE	phosphodiesterase 2A, cGMP-stimulated	protein-coding	0.324121201364939	0.0569073623157522	-0.144827148188466	-0.148760965348574	0.652396733701371	-0.138585371679123	-0.143703166841961	-0.148073502083646	0.589228911055589	0.801583093946646	1
Merged-chr2-4548595-3	chr2	4548501	4548701	+	933.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 11 of 23)	intron (NM_001177843, intron 11 of 23)	-11153.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-16083314-3	chr4	16083220	16083420	+	969.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69432.0	NM_145950	209212.0	Mm.46455	NM_145950	ENSMUSG00000041153	Osgin2	BC010311|C230027H09Rik	oxidative stress induced growth inhibitor family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-114687996-2	chr5	114687896	114688096	+	838.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019821, intron 1 of 4)	ORR1A2|LTR|ERVL-MaLR	2939.0	NM_019821	56356.0	Mm.275766	NM_019821	ENSMUSG00000011884	Gltp	1110001F24Rik|C76925|C77564	glycolipid transfer protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-89019007-2	chr11	89018883	89019083	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009546, exon 9 of 9)	3' UTR (NM_009546, exon 9 of 9)	19580.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	-0.646672543513326	-0.634465653333345	-0.638453378507185	-0.6415376310363	-0.356083063934501	-0.633568291737654	0.175861122185212	-0.640998339051439	3.48639604418021	0.204692294668442	1
Merged-chr10-98815037-4	chr10	98814912	98815112	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-99630.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-136083883-4	chr5	136083760	136083960	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133914)	promoter-TSS (NM_133914)	-56.0	NM_133914	54153.0	Mm.290655	NM_133914	ENSMUSG00000004952	Rasa4	AA793972|AW112107|BB079060|CAPRI|GAPL	RAS p21 protein activator 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-105456691-2	chr11	105456591	105456791	+	589.333313	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172568)	promoter-TSS (NM_172568)	44.0	NM_172568	632687.0	Mm.121570	NM_172568	ENSMUSG00000078627	March10	4933417C16Rik|AV039223|Rnf190	membrane-associated ring finger (C3HC4) 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-80640113-2	chr2	80640013	80640213	+	688.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001190179, intron 1 of 8)	intron (NM_001190179, intron 1 of 8)	849.0	NM_001190179	69482.0	Mm.29200	NM_027091	ENSMUSG00000026999	Nup35	2310006I24Rik|35kDa|5330402E05Rik|MP44|NO44	nucleoporin 35	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-11009554-4	chr8	11009472	11009672	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_046017, intron 1 of 4)	CpG-13826	-1142.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141638324-3	chr4	141638208	141638408	+	834.477783	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033150, intron 6 of 19)	intron (NM_001033150, intron 6 of 19)	-14474.0	NM_001013780	384071.0	Mm.295682	NM_001013780	ENSMUSG00000040740	Slc25a34	Gm1369	solute carrier family 25, member 34	protein-coding	2.66235129097136	2.23299450512188	2.96691108044742	3.01581253840056	1.68359703808529	1.37184857235526	1.60452408146589	2.56917550746464	-1.88329005086992	0.0376052732718122	0.275787328065527
Merged-chr2-173352390-4	chr2	173352237	173352437	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-75804.0	NM_022995	65112.0	Mm.73682	NM_022995	ENSMUSG00000038400	Pmepa1	2210418I02Rik|AW455466|Erg1.2|N4wbp4|Stag1|Tmepai	prostate transmembrane protein, androgen induced 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-51497563-2	chr3	51497463	51497663	+	711.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR40|LTR|ERVK	13597.0	NM_016858	19338.0	Mm.1664	NM_016858	ENSMUSG00000027739	Rab33b	-	RAB33B, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116853229-4	chr11	116853150	116853350	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011358)	promoter-TSS (NM_011358)	-156.0	NM_011358	20382.0	Mm.21841	NM_011358	ENSMUSG00000034120	Srsf2	D11Wsu175e|MRF-1|Pr264|SC35|Sfrs10|Sfrs2	serine/arginine-rich splicing factor 2	protein-coding	5.78044161597411	5.68022897454045	5.86574040026198	5.73118891104747	5.41265225818528	5.28425923586892	6.41000686099476	4.98135527392027	-0.148547086221922	0.635111330287989	0.982417279970648
Merged-chr16-44109305-4	chr16	44109204	44109404	+	971.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358203, intron 6 of 14)	intron (NM_001358203, intron 6 of 14)	29955.0	NM_001358203	11964.0	Mm.217787	NM_007508	ENSMUSG00000052459	Atp6v1a	AI647066|Atp6a1|Atp6a2|Atp6v1a1|VA68|VPP2	ATPase, H+ transporting, lysosomal V1 subunit A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80655144-2	chr10	80655044	80655244	+	699.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145361, intron 1 of 8)	intron (NM_145361, intron 1 of 8)	1927.0	NM_145361	208198.0	Mm.60720	NM_145361	ENSMUSG00000003344	Btbd2	2610037C03Rik|4930512K17Rik	BTB (POZ) domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-102896608-1	chr2	102896508	102896708	+	562.0	f0_c57.idr	intron (NM_001039150, intron 1 of 13)	intron (NM_001039150, intron 1 of 13)	5057.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	0.659666562762098	0.29425253293791	1.06706878688082	0.719116478616124	0.273846863012766	0.29585065512752	0.288716803277928	0.725261446699316	-1.97066315103718	0.303523688291726	1
Merged-chr18-53915194-3	chr18	53915115	53915315	+	774.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152809, intron 4 of 12)	intron (NM_152809, intron 4 of 12)	53102.0	NM_152809	70425.0	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	-0.840608814302856	-0.831231520098205	-0.835117228809884	-0.837188942248382	-0.58314044791691	-0.828604969265564	-0.662912947924468	-0.428010821464927	2.96290682992561	0.289264133855943	1
Merged-chr15-36708094-2	chr15	36707994	36708194	+	629.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER34|LTR|ERV1	82838.0	NM_001253807	22631.0	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27827796-2	chr17	27827696	27827896	+	641.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-7254.0	NM_001271511	224647.0	Mm.196577	NM_001033279	ENSMUSG00000056692	D17Wsu92e	AU020189|C030010A15|C80239	DNA segment, Chr 17, Wayne State University 92, expressed	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19219164-2	chr7	19219064	19219264	+	558.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175668, intron 1 of 1)	intron (NM_175668, intron 1 of 1)	6626.0	NM_175668	319197.0	Mm.135984	NM_175668	ENSMUSG00000044317	Gpr4	-	G protein-coupled receptor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-102881079-4	chr11	102880979	102881179	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011431)	promoter-TSS (NM_011431)	-104.0	NM_001109995	20624.0	Mm.873	NM_011431	ENSMUSG00000020929	Eftud2	116kDa|Snrp116|U5-116kD	elongation factor Tu GTP binding domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-135206034-2	chr3	135205934	135206134	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	-6529.0	NM_173762	229841.0	Mm.161470	NM_173762	ENSMUSG00000045328	Cenpe	312kDa|AU019344|BC049989|C530022J18|CENP-E|Kif10	centromere protein E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33945983-2	chr16	33945883	33946083	+	636.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 12 of 14)	intron (NM_001145884, intron 12 of 14)	21055.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-51846607-4	chr13	51846506	51846706	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011817)	promoter-TSS (NM_011817)	-69.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-73434205-4	chr13	73434126	73434326	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33157.0	NM_145376	210992.0	Mm.284649	NM_145376	ENSMUSG00000021608	Lpcat1	2900035H07Rik|Aytl2|BB137372|BC005662|C87117|LPCAT|rd11	lysophosphatidylcholine acyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-31254774-2	chr17	31254690	31254890	+	727.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_025290)	TTS (NM_025290)	22566.0	NM_025290	22092.0	Mm.12743	NM_025290	ENSMUSG00000024033	Rsph1	MCA|Tsga2	radial spoke head 1 homolog (Chlamydomonas)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-8311869-4	chr17	8311781	8311981	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_073374)	promoter-TSS (NR_073374)	-763.0	NR_073374	75060.0	Mm.426530	NR_073374	ENSMUSG00000087478	4930506C21Rik	-	RIKEN cDNA 4930506C21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-25522985-1	chr8	25522885	25523085	+	577.0	f0_balb.idr	intron (NM_001079908, intron 1 of 17)	intron (NM_001079908, intron 1 of 17)	4226.0	NM_001079908	14182.0	Mm.265716	NM_010206	ENSMUSG00000031565	Fgfr1	AW208770|Eask|FGFR-I|FLG|Fgfr-1|Flt-2|Hspy|MFR|bFGF-R-1|c-fgr	fibroblast growth factor receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-116083433-4	chr6	116083356	116083556	+	987.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177412, intron 3 of 5)	intron (NM_177412, intron 3 of 5)	-88451.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-132236101-2	chr2	132236001	132236201	+	625.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11687.0	NM_027478	70612.0	Mm.30116	NM_027478	ENSMUSG00000027341	Tmem230	5730494N06Rik|AA407821	transmembrane protein 230	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-116106993-3	chr3	116106903	116107103	+	607.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22685.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	1.17287882475782	1.47427610934053	0.959687702309471	1.24371171374008	0.720186564754183	1.9091606340806	0.966495563802528	0.93982425770561	0.0666410819440781	0.960469605096667	0.998431161219273
Merged-chr19-47465126-2	chr19	47465026	47465226	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164717)	promoter-TSS (NM_001164717)	-715.0	NM_008018	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105935407-1	chr8	105935307	105935507	+	546.0	f1_c57bl6.idr	TTS (NM_013640)	TTS (NM_013640)	-1545.0	NM_023182	109660.0	Mm.2745	NM_023182	ENSMUSG00000031896	Ctrl	0910001G08Rik|1810004D15Rik|AV005227|Ctra-1|Ctra1|chymopasin|mFLJ00366	chymotrypsin-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-25464753-3	chr14	25464648	25464848	+	728.577759	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	5563.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-54154153-2	chr10	54154053	54154253	+	818.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	78231.0	NR_038016	100502920.0	Mm.403982	NR_038016	ENSMUSG00000097069	Gm16998	-	predicted gene, 16998	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-113999169-2	chr5	113999050	113999250	+	956.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4585.0	NM_010018	13142.0	Mm.20115	NM_010018	ENSMUSG00000042096	Dao	AI987963|DAAO|DAMOX|Dao-1|Dao1	D-amino acid oxidase	protein-coding	1.27030926834601	0.688083453743488	0.671044074939772	0.657537821005957	0.842217298265395	2.18377172342173	1.27981451929947	1.48808526742981	2.67864170398846	0.0680563261171934	0.391438063640502
Merged-chr1-191816310-2	chr1	191816210	191816410	+	583.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5163.0	NM_010892	18005.0	Mm.33773	NM_010892	ENSMUSG00000026622	Nek2	AA617254|C77054	NIMA (never in mitosis gene a)-related expressed kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-20370646-2	chr16	20370546	20370746	+	982.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013790, intron 17 of 29)	B2_Mm2|SINE|B2	-45242.0	NM_183158	224044.0	Mm.276400	NM_183158	ENSMUSG00000022818	Cyp2ab1	EG224044|F730023N20	cytochrome P450, family 2, subfamily ab, polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-170329360-3	chr2	170329286	170329486	+	720.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-26975.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-12139329-2	chr15	12139229	12139429	+	693.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358823, intron 4 of 18)	intron (NM_001358823, intron 4 of 18)	21478.0	NM_001358823	22763.0	Mm.273496	NM_011767	ENSMUSG00000022201	Zfr	C920030H05Rik	zinc finger RNA binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-122640000-1	chr6	122639900	122640100	+	802.0	f1_balb.idr	Intergenic	(GA)n|Simple_repeat|Simple_repeat	13576.0	NM_139218	73708.0	Mm.27982	NM_139218	ENSMUSG00000046323	Dppa3	2410075G02Rik|PCG7|PGC7|Stella	developmental pluripotency-associated 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-127613001-2	chr5	127612945	127613145	+	678.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_133895, intron 1 of 7)	B1_Mus2|SINE|Alu	4347.0	NM_133895	100561.0	Mm.28506	NM_133895	ENSMUSG00000029416	Slc15a4	AA987064|AW742963|C130069N12Rik|PHT1|PTR4	solute carrier family 15, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-92091431-4	chr6	92091334	92091534	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011630)	promoter-TSS (NM_011630)	16.0	NM_011630	22026.0	Mm.87062	NM_011630	ENSMUSG00000005893	Nr2c2	TAK1|Tr4|mKIAA4145	nuclear receptor subfamily 2, group C, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-178360910-1	chr1	178360810	178361010	+	621.0	f0_balb.idr	Intergenic	RLTR13D3|LTR|ERVK	-23095.0	NR_149827	51810.0	Mm.86589	NM_016805	ENSMUSG00000039630	Hnrnpu	AA408410|AI256620|AL024194|AL024437|AW557595|C86794|Hnrpu|SAFA|Sp120|hnRNP U	heterogeneous nuclear ribonucleoprotein U	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-135781433-2	chr1	135781333	135781533	+	868.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15348.0	NM_013750	27280.0	Mm.34346	NM_013750	ENSMUSG00000041801	Phlda3	Tih1	pleckstrin homology like domain, family A, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-62339526-4	chr10	62339411	62339611	+	969.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010438, intron 4 of 21)	intron (NM_010438, intron 4 of 21)	910.0	NM_001146100	15275.0	Mm.196605	NM_010438	ENSMUSG00000037012	Hk1	BB404130|Hk-1|Hk1-s|dea|mHk1-s	hexokinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-50023020-2	chr18	50022937	50023137	+	736.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177759, intron 1 of 1)	intron (NM_001177759, intron 1 of 1)	-7947.0	NM_001360935	106869.0	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	1.99811900652452	2.74295997450615	1.27977667368577	2.10562233095278	1.89699022943524	1.79034302855339	2.30031371908454	2.33014097563505	-0.0992478012231285	0.918541671759206	0.998431161219273
Merged-chr11-97409746-2	chr11	97409646	97409846	+	606.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-40414.0	NM_021493	58996.0	Mm.394118	NM_021493	ENSMUSG00000049807	Arhgap23	A330041B18Rik	Rho GTPase activating protein 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28435381-2	chr7	28435281	28435481	+	617.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175021, intron 1 of 12)	intron (NM_175021, intron 1 of 12)	810.0	NM_175021	233033.0	Mm.54120	NM_175021	ENSMUSG00000109336	Samd4b	BC042901	sterile alpha motif domain containing 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-95956991-2	chr5	95956891	95957091	+	936.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018866)	promoter-TSS (NM_018866)	52.0	NM_018866	55985.0	Mm.10116	NM_018866	ENSMUSG00000023078	Cxcl13	4631412M08Rik|ANGIE2|Angie|BCA-1|BLC|BLR1L|Scyb13	chemokine (C-X-C motif) ligand 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-44638435-2	chr13	44638243	44638443	+	684.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-92431.0	NM_021878	16468.0	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-135154114-2	chr1	135154014	135154214	+	609.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026823, intron 3 of 6)	intron (NM_026823, intron 3 of 6)	7280.0	NM_026823	68724.0	Mm.174998	NM_026823	ENSMUSG00000026426	Arl8a	1110033P22Rik|Arl10b|gie2	ADP-ribosylation factor-like 8A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-35984912-2	chr16	35984812	35985012	+	843.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008465, intron 1 of 13)	intron (NM_008465, intron 1 of 13)	1549.0	NM_008465	16646.0	Mm.3991	NM_008465	ENSMUSG00000022905	Kpna1	AW494490|IPOA5|NPI1|Rch2|mSRP1	karyopherin (importin) alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-76282132-2	chr16	76282032	76282232	+	892.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	90917.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-59660663-2	chr9	59660563	59660763	+	801.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253883, intron 1 of 10)	intron (NM_001253883, intron 1 of 10)	4295.0	NM_011099	18746.0	Mm.326167	NM_011099	ENSMUSG00000032294	Pkm	AA414905|AL024370|AL024424|Pk-2|Pk-3|Pk3|Pkm2	pyruvate kinase, muscle	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-152165770-2	chr3	152165670	152165870	+	744.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_016867, exon 1 of 6)	exon (NM_016867, exon 1 of 6)	130.0	NM_016867	54120.0	Mm.97	NM_016867	ENSMUSG00000039131	Gipc2	2200002N01Rik|AU021850|Semcap2	GIPC PDZ domain containing family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-61883473-2	chr8	61883373	61883573	+	593.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001293772, intron 1 of 21)	intron (NM_001293772, intron 1 of 21)	19217.0	NM_001081390	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-31583540-2	chr17	31583440	31583640	+	637.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_027493, intron 2 of 11)	intron (NR_027493, intron 2 of 11)	18767.0	NM_016670	18771.0	Mm.259295	NM_016670	ENSMUSG00000006705	Pknox1	D17Wsu76e|PREP1	Pbx/knotted 1 homeobox	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-39651913-4	chr8	39651810	39652010	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR33|LTR|ERVL	-9232.0	NM_001113326	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	5.06799773749414	5.61285015574887	5.04679365356451	4.33151459319346	4.8974384902481	4.80004032832469	5.51830670402909	4.78734053146971	-0.0544171839897343	0.879505192443313	0.998431161219273
Merged-chr2-92296618-4	chr2	92296517	92296717	+	933.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109690, intron 3 of 15)	intron (NM_001109690, intron 3 of 15)	74440.0	NM_001290774	228366.0	Mm.31158	NM_172670	ENSMUSG00000040434	Large2	5730485C17Rik|AI891893|Gyltl1b|Largel|mKIAA4105	LARGE xylosyl- and glucuronyltransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-146170829-5	chr6	146170698	146170898	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019923, intron 51 of 56)	ORR1E|LTR|ERVL-MaLR	236676.0	NM_010656	16651.0	Mm.49689	NM_010656	ENSMUSG00000030255	Sspn	Krag	sarcospan	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-123686977-1	chr4	123686877	123687077	+	669.0	f0_balb.idr	Intergenic	CpG	-2617.0	NM_001199136	11426.0	Mm.402299	NM_009600	ENSMUSG00000028649	Macf1	ABP620|Acf7|Aclp7|MACF|R74989|mKIAA0465	microtubule-actin crosslinking factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-71225591-2	chr6	71225491	71225691	+	577.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009762, intron 4 of 8)	intron (NM_009762, intron 4 of 8)	25712.0	NM_017399	14080.0	Mm.22126	NM_017399	ENSMUSG00000054422	Fabp1	Fabpl|L-FABP	fatty acid binding protein 1, liver	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-13048839-3	chr10	13048750	13048950	+	670.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	40400.0	NM_175102	66125.0	Mm.29743	NM_175102	ENSMUSG00000078348	Sf3b5	10kDa|1110005L13Rik|AU043053|Sf3b10	splicing factor 3b, subunit 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27790817-2	chr17	27790717	27790917	+	770.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033279, intron 2 of 4)	intron (NM_001033279, intron 2 of 4)	29725.0	NM_001033279	224647.0	Mm.196577	NM_001033279	ENSMUSG00000056692	D17Wsu92e	AU020189|C030010A15|C80239	DNA segment, Chr 17, Wayne State University 92, expressed	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-68914753-4	chr8	68914801	68915001	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	34346.0	NM_008509	16956.0	Mm.1514	NM_008509	ENSMUSG00000015568	Lpl	-	lipoprotein lipase	protein-coding	1.79223004367894	2.02070496529336	2.05958588759643	1.08708160508682	1.57052526641141	1.13158815382186	2.26949941108818	1.90215354212631	-0.00991857318680332	0.993070655376337	0.998431161219273
Merged-chr12-30282709-2	chr12	30282565	30282765	+	940.375	f0_balb.idr|f1_balb.idr	intron (NM_001324521, intron 6 of 15)	intron (NM_001324521, intron 6 of 15)	90710.0	NM_172951	268534.0	Mm.279765	NM_172951	ENSMUSG00000020672	Sntg2	2210008K22Rik|9530013L23|BB121248|G2syn|Syn5	syntrophin, gamma 2	protein-coding	2.32449182290816	1.52405239491712	1.76176298346233	2.84014081371514	3.6994755304139	3.16957048482848	2.95391389859282	4.23065554242735	2.41409180301639	0.00126231605304666	0.0235174969013257
Merged-chr3-20348390-4	chr3	20348286	20348486	+	962.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175086, intron 1 of 1)	MusHAL1|LINE|L1	18791.0	NM_175086	11608.0	Mm.134863	NM_175086	ENSMUSG00000054988	Agtr1b	AT1B|AT2R1B|Agtr-1b|Angtr-1b	angiotensin II receptor, type 1b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-119341591-1	chr6	119341491	119341691	+	862.0	f0_balb.idr	intron (NM_001362214, intron 4 of 11)	MLT1J|LTR|ERVL-MaLR	-10825.0	NM_172492	211187.0	Mm.121498	NM_172492	ENSMUSG00000055003	Lrtm2	A230084J22|AI841794	leucine-rich repeats and transmembrane domains 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-59441530-3	chr14	59441407	59441607	+	917.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001320725)	promoter-TSS (NM_001320725)	544.0	NM_001360592	69008.0	Mm.179091	NM_026908	ENSMUSG00000021981	Cab39l	1500031K13Rik|2810425O13Rik|4930520C08Rik|AA589432|MO2L	calcium binding protein 39-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-72008537-4	chr8	72008445	72008645	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024444, intron 2 of 12)	intron (NM_024444, intron 2 of 12)	1081.0	NM_024444	72054.0	Mm.160020	NM_024444	ENSMUSG00000003484	Cyp4f18	1810054N16Rik|Cyp4f3|Cypf18	cytochrome P450, family 4, subfamily f, polypeptide 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-8660076-4	chr11	8659992	8660192	+	927.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 1 of 30)	intron (NM_001083587, intron 1 of 30)	4443.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44177268-2	chr9	44177168	44177368	+	573.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007619, intron 2 of 15)	B1_Mus1|SINE|Alu	42610.0	NM_001359530	84004.0	Mm.275003	NM_023061	ENSMUSG00000032135	Mcam	1-gicerin|AV025631|CD146|CD149|Muc18|s-endo|s-gicerin	melanoma cell adhesion molecule	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167801113-2	chr2	167801013	167801213	+	625.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	109936.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44126263-4	chr9	44126165	44126365	+	841.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152189, intron 1 of 1)	intron (NR_152189, intron 1 of 1)	8220.0	NR_152189	100038560.0	Mm.429758	NR_152189		Gm10687	-	predicted gene 10687	ncRNA	2.9289235928415	2.93070817622024	2.73546399603988	2.43662813024726	2.72833115119208	2.30485068409452	2.2320866767309	2.94457020652485	-0.359110782809626	0.621458301848955	0.979537295922371
Merged-chr1-54562909-2	chr1	54562809	54563009	+	555.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5225.0	NM_001163314	241062.0	Mm.103539	NM_175508	ENSMUSG00000073678	Pgap1	5033403E17Rik|9030223K07Rik|A530084K22|D230012E17Rik|oto	post-GPI attachment to proteins 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-50157023-2	chr11	50156923	50157123	+	854.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001290759, exon 12 of 22)	exon (NM_001290759, exon 12 of 22)	-17828.0	NM_026543	68067.0	Mm.40828	NM_026543	ENSMUSG00000020381	Mrnip	2900016G09Rik|3010026O09Rik|AI851514|AW475975	MRN complex interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-153557044-2	chr1	153556944	153557144	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7330.0	NM_028749	74091.0	Mm.24887	NM_028749	ENSMUSG00000042684	Npl	0610033B02Rik	N-acetylneuraminate pyruvate lyase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-86548473-3	chr4	86548382	86548582	+	680.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081096, intron 1 of 3)	intron (NM_001081096, intron 1 of 3)	9821.0	NM_001081096	75811.0	Mm.56451	NM_001081096	ENSMUSG00000028492	Saxo1	4930500O09Rik|Fam154a	stabilizer of axonemal microtubules 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-88299821-2	chr1	88299721	88299921	+	704.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6891.0	NM_134252	171382.0	Mm.218753	NM_134252	ENSMUSG00000036251	Trpm8	CMR1|LTRPC6|LTrpC-6|TRPP8|Trp-p8	transient receptor potential cation channel, subfamily M, member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-95009697-3	chr11	95009613	95009813	+	869.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146025)	promoter-TSS (NM_146025)	-166.0	NM_146025	217125.0	Mm.297199	NM_146025	ENSMUSG00000047181	Samd14	AI839049|AI854782|BC034054	sterile alpha motif domain containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-99191434-1	chr4	99191334	99191534	+	750.0	f1_balb.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-2500.0	NM_175029	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	1.4201366551154	2.5646781002745	2.23585825941782	1.70051442212065	1.79297727310823	3.17026789244424	1.54406902610149	2.84077572137926	1.01024919291841	0.290563434976821	0.79539026179457
Merged-chr7-143605534-4	chr7	143605435	143605635	+	825.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5445.0	NM_013742	27267.0	Mm.125659	NM_013742	ENSMUSG00000010755	Cars	CA3	cysteinyl-tRNA synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-40035833-2	chr12	40035733	40035933	+	578.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007487, exon 2 of 2)	3' UTR (NM_007487, exon 2 of 2)	1543.0	NM_007487	11861.0	Mm.12723	NM_007487	ENSMUSG00000047446	Arl4a	AI467555|Arl4	ADP-ribosylation factor-like 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-134535324-4	chr4	134535221	134535421	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029759)	promoter-TSS (NM_029759)	-53.0	NM_001355187	76824.0	Mm.30153	NM_029759	ENSMUSG00000046671	Mtfr1l	2410166I05Rik|AI480750|Fam54b	mitochondrial fission regulator 1-like	protein-coding	4.05897511730954	3.38960115694891	3.1744972092892	3.51526074130656	3.21566371363241	3.76030807545896	3.48284528638846	2.87223134075846	-0.343291431138576	0.540960095568244	0.954866069207078
Merged-chr13-41502553-3	chr13	41502476	41502676	+	971.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-15216.0	NM_001111324	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-30920034-2	chr5	30919934	30920134	+	856.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133918, intron 6 of 7)	intron (NM_133918, intron 6 of 7)	-1525.0	NM_001310525	16548.0	Mm.22451	NM_008439	ENSMUSG00000029162	Khk	-	ketohexokinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-77335742-3	chr6	77335641	77335841	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145732, intron 8 of 18)	ORR1E|LTR|ERVL-MaLR	46734.0	NR_045141	70753.0	Mm.490700	NR_045141	ENSMUSG00000108077	6330415B21Rik	-	RIKEN cDNA 6330415B21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-83786205-2	chr17	83786105	83786305	+	713.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_054082, intron 11 of 16)	intron (NM_054082, intron 11 of 16)	60585.0	NM_025325	107766.0	Mm.30100	NM_025325	ENSMUSG00000000673	Haao	0610007K21Rik|0610012J07Rik|3-HAO|3-HAOxase|3HAO	3-hydroxyanthranilate 3,4-dioxygenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-82863203-4	chr18	82863126	82863326	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB8|LINE|L1	7329.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-88676388-4	chr10	88676298	88676498	+	874.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011461, intron 5 of 5)	intron (NM_011461, intron 5 of 5)	6625.0	NM_011461	20728.0	Mm.21642	NM_011461	ENSMUSG00000004359	Spic	AU019198|C76795|Prf|Spi-C	Spi-C transcription factor (Spi-1/PU.1 related)	protein-coding	4.05038577942679	3.91980330664321	3.14786253780508	3.68707988112413	4.46136424313295	3.94765152443847	2.75284947023513	3.90326221290359	0.228244437523661	0.674084267112337	0.99440487726309
Merged-chr2-129384108-4	chr2	129383932	129384132	+	857.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR10_RN|LTR|ERVK	-12893.0	NM_008361	16176.0	Mm.222830	NM_008361	ENSMUSG00000027398	Il1b	IL-1beta|Il-1b	interleukin 1 beta	protein-coding	2.44680429475878	3.53122619446055	3.24368708572146	3.23671855024215	3.09356894427745	4.22524715081412	3.17444052350788	1.85983975028979	0.280340657082734	0.694159235912299	0.997569417625163
Merged-chr10-75151536-4	chr10	75151432	75151632	+	936.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081412, intron 8 of 22)	intron (NM_001081412, intron 8 of 22)	-60541.0	NM_153406	74392.0	Mm.27716	NM_153406	ENSMUSG00000033444	Specc1l	4930470P14Rik|4932439K10Rik|9530057A13Rik|AI317249|Cytsa|mKIAA0376	sperm antigen with calponin homology and coiled-coil domains 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-100676338-6	chr13	100676251	100676451	+	823.235718	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168386, intron 1 of 9)	intron (NM_001168386, intron 1 of 9)	6870.0	NM_001168386	76041.0	Mm.23977	NM_183115	ENSMUSG00000048924	Ccdc125	5830436D01Rik|AL023012	coiled-coil domain containing 125	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-32168664-4	chr5	32168576	32168776	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32204.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124439790-4	chr5	124439681	124439881	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030241)	promoter-TSS (NM_030241)	-149.0	NM_030241	67956.0	Mm.137966	NM_030241	ENSMUSG00000049327	Kmt5a	2410195B05Rik|AA617402|AW536475|PR-SET7|PR/SET07|Setd8	lysine methyltransferase 5A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-88175437-1	chr8	88175337	88175537	+	566.0	f0_balb.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-23776.0	NM_001164499	214627.0	Mm.491211	NM_001164497	ENSMUSG00000036779	Papd5	5730445M16Rik|5830428A09	PAP associated domain containing 5	protein-coding	0.128567902222155	-0.297975286530951	-0.301695485776607	-0.304551370029395	0.0456875655245255	-0.297133800464381	-0.300876773858781	0.0960738423881637	0.725600577421013	0.772046031014034	1
Merged-chr19-10041008-2	chr19	10040908	10041108	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021890)	promoter-TSS (NM_021890)	-540.0	NM_021890	60527.0	Mm.253875	NM_021890	ENSMUSG00000024664	Fads3	AI464531	fatty acid desaturase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-103330699-2	chr11	103330599	103330799	+	953.25	f1_balb.idr|f1_c57bl6.idr	TTS (NM_133715)	TTS (NM_133715)	14003.0	NM_133715	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-29746554-2	chr2	29746494	29746694	+	665.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14934.0	NM_001177392	433416.0	Mm.330112	NM_001034887	ENSMUSG00000075425	Gm13547	-	predicted gene 13547	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106821201-4	chr11	106821094	106821294	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_025481, exon 19 of 19)	3' UTR (NM_025481, exon 19 of 19)	31942.0	NM_001166685	320162.0	Mm.30524	NM_177088	ENSMUSG00000018372	Cep95	4732496G21Rik|AI118346|AI448335|Ccdc45|D330027A14Rik|F630025I20Rik	centrosomal protein 95	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-119492301-2	chr13	119492201	119492401	+	987.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177666, intron 1 of 3)	intron (NM_001177666, intron 1 of 3)	3441.0	NM_001177666	633640.0	Mm.46679	NM_001039244	ENSMUSG00000074634	Tmem267	EG633640|Gm7120	transmembrane protein 267	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-120580137-2	chr6	120580037	120580237	+	633.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25341.0	NR_045733	73505.0	Mm.416867	NR_045733		1700072O05Rik	-	RIKEN cDNA 1700072O05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-53430958-5	chr11	53430901	53431101	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001326614)	promoter-TSS (NM_001326614)	-170.0	NM_001326614	22272.0	Mm.251621	NM_025352	ENSMUSG00000044894	Uqcrq	1100001F06Rik|1500040F11Rik|5830407L17Rik|9.5kDa|AA959903|QP-C|Qpc|Uqcrb|c1502	ubiquinol-cytochrome c reductase, complex III subunit VII	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-33316008-4	chr12	33315914	33316114	+	891.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033436, intron 1 of 7)	intron (NM_001033436, intron 1 of 7)	13499.0	NM_001033436	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	-0.499940950918087	-0.487518524828365	0.0891561271406926	-0.494726023626598	-0.499164980458282	-0.486601867615524	0.100277611126392	-0.494177430718284	0.0410194320726077	0.98816738256539	1
Merged-chr6-17652327-4	chr6	17652199	17652399	+	973.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007604, intron 3 of 9)	ORR1E|LTR|ERVL-MaLR	15289.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-135184003-4	chr6	135183899	135184099	+	951.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC5|LINE|L1	-4481.0	NR_040296	100502888.0	Mm.437844	NR_040296	ENSMUSG00000108239	Gm19434	-	predicted gene, 19434	ncRNA	6.58731403642265	6.90107191395941	6.00291013225968	6.54833575487555	4.67143729471573	4.39904642686842	3.83615669829262	3.6038127640777	-2.66324254848248	5.89405843362924e-17	5.30376848150127e-14
Merged-chr11-68555505-3	chr11	68555401	68555601	+	947.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146004)	promoter-TSS (NM_146004)	-685.0	NM_146004	215723.0	Mm.131205	NM_146004	ENSMUSG00000048329	Mfsd6l	-	major facilitator superfamily domain containing 6-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-114783856-4	chr5	114783748	114783948	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026718, intron 1 of 14)	Tigger7|DNA|TcMar-Tigger	8708.0	NM_026718	68420.0	Mm.275554	NM_026718	ENSMUSG00000041870	Ankrd13a	1100001D10Rik|ANKRD13|AU046136	ankyrin repeat domain 13a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-40563578-9	chr9	40563427	40563627	+	950.9111330000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-32144.0	NM_001357617	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	1.63426416785469	1.96706764829335	1.90654135420804	2.1092461443334	2.12316002541112	2.37208307190159	2.18399550999358	2.22631040108356	0.851798685681603	0.340422104222163	0.840985121439433
Merged-chr10-95262612-3	chr10	95262506	95262706	+	671.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001330138, intron 2 of 2)	intron (NM_001330138, intron 2 of 2)	61103.0	NM_001330138	12905.0	Mm.473739	NM_009950	ENSMUSG00000045867	Cradd	RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-49415683-2	chr8	49415583	49415783	+	669.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-740993.0	NM_011857	23965.0	Mm.42191	NM_011857	ENSMUSG00000031561	Tenm3	2610100B16Rik|Odz1|Odz3|Ten-m3|mKIAA1455	teneurin transmembrane protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-83205307-3	chr15	83205220	83205420	+	861.111145	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33112.0	NM_029787	109754.0	Mm.22560	NM_029787	ENSMUSG00000018042	Cyb5r3	0610016L08Rik|2500002N19Rik|C85115|Dia-1|Dia1|WU:AL591952.1-001|WU:AL591952.1-002|WU:AL591952.1-003|WU:Cyb5r3	cytochrome b5 reductase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-8736177-4	chr3	8736093	8736293	+	975.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69155.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	-0.944014261241714	-0.43664531059229	-0.938078458010373	-0.940312000773382	-0.94346398652606	-0.925918997699352	-0.600657589095425	-0.939921983679466	-0.675209766516356	0.829065892576575	1
Merged-chr1-74384705-2	chr1	74384605	74384805	+	756.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_013612, exon 13 of 15)	exon (NM_013612, exon 13 of 15)	-6904.0	NM_153088	227292.0	Mm.165042	NM_153088	ENSMUSG00000026176	Ctdsp1	GIP|NLIIF|Nif3|SCP1	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-57030690-2	chr16	57030590	57030790	+	865.6666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	MERV1_I-int|LTR|ERV1	40656.0	NM_001358101	69457.0	Mm.58105	NM_183281	ENSMUSG00000046748	Tmem45a2	2310005G13Rik	transmembrane protein 45A2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-33956443-4	chr3	33956307	33956507	+	814.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63672.0	NM_008053	14359.0	Mm.259021	NM_008053	ENSMUSG00000027680	Fxr1	1110050J02Rik|9530073J07Rik|AI851072|Fxr1h|Fxr1p	fragile X mental retardation gene 1, autosomal homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76350174-3	chr15	76350063	76350263	+	907.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_025340, exon 2 of 9)	exon (NM_025340, exon 2 of 9)	947.0	NM_025340	106025.0	Mm.41463	NM_025340	ENSMUSG00000022552	Sharpin	0610041B22Rik|AW121341|RBCKL1|SIPL1|cpdm	SHANK-associated RH domain interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-68993409-4	chr8	68993346	68993546	+	918.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-95290.0	NM_007509	11966.0	Mm.249096	NM_007509	ENSMUSG00000006273	Atp6v1b2	AI194269|AI790362|Atp6b2|HO57|R74844	ATPase, H+ transporting, lysosomal V1 subunit B2	protein-coding	2.61446907711208	3.57840222649712	1.30017614420554	1.25815014669398	2.88881483272199	3.4085939127823	1.31176946952684	3.1189542900868	0.532072243799264	0.776845768202897	0.998431161219273
Merged-chr5-140349248-3	chr5	140349193	140349393	+	753.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172277, intron 7 of 10)	B1_Mm|SINE|Alu	17337.0	NM_001356584	17766.0	Mm.118846	NM_008637	ENSMUSG00000036639	Nudt1	Mth1	nudix (nucleoside diphosphate linked moiety X)-type motif 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-121585752-2	chr5	121585652	121585852	+	768.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009656, intron 1 of 12)	intron (NM_009656, intron 1 of 12)	8072.0	NM_009656	11669.0	Mm.284446	NM_009656	ENSMUSG00000029455	Aldh2	AHD-M1|ALDH-E2|ALDHI|Ahd-5|Ahd5	aldehyde dehydrogenase 2, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-9035561-2	chr3	9035461	9035661	+	886.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26403.0	NR_040597	75149.0	Mm.399324	NR_040597	ENSMUSG00000103116	4930539M17Rik	-	RIKEN cDNA 4930539M17 gene	ncRNA	0.00679076442831891	0.0244460751065059	0.018673997917104	0.556885577844378	0.00789621584740599	0.0257457037846579	0.712132153588289	0.453880492689271	1.11614026792507	0.616912670247706	1
Merged-chr13-101768284-4	chr13	101768177	101768377	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001077495)	promoter-TSS (NM_001077495)	-60.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-107081473-4	chr3	107081380	107081580	+	989.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20087.0	NM_008417	16490.0	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-92725618-3	chr7	92725520	92725720	+	774.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15839.0	NR_015510	666737.0	Mm.473620	NR_015510	ENSMUSG00000074024	4632427E13Rik	AU015482	RIKEN cDNA 4632427E13 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-127532618-1	chr3	127532518	127532718	+	581.0	f1_balb.idr	Intergenic	Intergenic	-12471.0	NR_146435	110008574.0		NR_146435		LOC110008574	-	miR-302 host gene	ncRNA	1.20407223108931	0.721382428031872	2.2459430820509	2.10025760245851	1.35080517840744	0.725837758628452	0.705695138358717	0.687901972546429	-2.84329029308435	0.0556939714767022	0.347426136799379
Merged-chr13-23730639-3	chr13	23730529	23730729	+	843.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8178.0	NM_015786	50708.0	Mm.193539	NM_015786	ENSMUSG00000036181	Hist1h1c	0610008C09Rik|H1.2|H1c|H1f2|H1var1|His1a	histone cluster 1, H1c	protein-coding	3.35558175175285	3.66420745494481	2.51339021459903	2.43246443180314	1.92071284793168	1.21470112243642	1.16823581740178	1.12600839084163	-3.93204761118476	0.000194502982799127	0.00527179244192152
Merged-chr2-79132388-4	chr2	79132271	79132471	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-123055.0	NM_010576	16401.0	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-122637830-4	chr2	122637732	122637932	+	992.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001004174)	promoter-TSS (NM_001004174)	-55.0	NM_001004174	433470.0	Mm.36783	NM_001004174	ENSMUSG00000033213	AA467197	Nmes1|mir-147	expressed sequence AA467197	protein-coding	3.50878351407279	3.00263406639021	4.27920648615633	4.21664048615191	3.60640794742443	3.2992323860978	4.53598577203701	3.71670490453298	0.0306752446211301	0.954679311892602	0.998431161219273
Merged-chr12-83972335-4	chr12	83972231	83972431	+	976.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15530.0	NM_134188	171210.0	Mm.371675	NM_134188	ENSMUSG00000021226	Acot2	AA571646|MTE-I|Mte1	acyl-CoA thioesterase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-68247383-3	chr10	68247289	68247489	+	718.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023598, intron 2 of 9)	intron (NM_023598, intron 2 of 9)	31337.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	1.41093415664232	1.9867124514862	0.949975225178373	0.934007309917279	1.27943636495142	1.60691896235114	2.28472675365866	1.6342749270521	1.09779650340151	0.372517005251021	0.865109408625856
Merged-chr10-71327102-3	chr10	71327034	71327234	+	829.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16389.0	NR_152791	102637684.0	Mm.338906	NR_152791	ENSMUSG00000093732	Gm20609	-	predicted gene 20609	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-136151838-2	chr4	136151738	136151938	+	788.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8016.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-86994423-2	chr11	86994323	86994523	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001005341)	promoter-TSS (NM_001005341)	-661.0	NM_001005341	77864.0	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-102035179-2	chr7	102035079	102035279	+	906.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029211, intron 4 of 8)	B3|SINE|B2	-17024.0	NM_010531	16068.0	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-76189978-1	chr5	76189878	76190078	+	575.0	f0_balb.idr	intron (NM_011626, intron 1 of 5)	intron (NM_011626, intron 1 of 5)	6098.0	NM_011626	21982.0	Mm.790	NM_011626	ENSMUSG00000029234	Tmem165	AV026557|Tpardl|Tparl|pFT27	transmembrane protein 165	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-143652035-4	chr5	143651966	143652166	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163548, intron 1 of 12)	MLT1N2|LTR|ERVL-MaLR	825.0	NM_001163548	19159.0	Mm.281003	NM_011182	ENSMUSG00000018001	Cyth3	AI648983|ARNO3|CLM3|Grp1|Pscd3	cytohesin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-56481134-2	chr6	56481034	56481234	+	810.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-111500.0	NM_001159955	18575.0	Mm.5145	NM_011054	ENSMUSG00000004347	Pde1c	-	phosphodiesterase 1C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71908703-4	chr8	71908629	71908829	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001166645, exon 1 of 3)	5' UTR (NM_001166645, exon 1 of 3)	123.0	NM_001166645	382019.0	Mm.251482	NM_001166645	ENSMUSG00000089857	Zfp882	Gm15468	zinc finger protein 882	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-26509515-2	chr2	26509415	26509615	+	569.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5588.0	NR_132655	102639736.0		NR_132655		Gm35978	-	predicted gene, 35978	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-45613565-2	chr13	45613465	45613665	+	636.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199304, intron 5 of 6)	intron (NM_001199304, intron 5 of 6)	106121.0	NM_025508	66355.0	Mm.290802	NM_025508	ENSMUSG00000000253	Gmpr	2310004P21Rik|AV028449|GMPR 1	guanosine monophosphate reductase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127546514-3	chr10	127546470	127546670	+	808.231506	f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 71 of 88)	intron (NM_008512, intron 71 of 88)	-12011.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	0.851298509025662	0.950079516819222	0.698373074738699	1.55436284413462	0.857730414175936	1.5862669042182	0.701615197574077	1.82162998434523	1.01255766891194	0.479969059724219	0.928518022987937
Merged-chr2-84662896-2	chr2	84662769	84662969	+	839.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145100, intron 4 of 4)	RSINE1|SINE|B4	3790.0	NM_001145100	100270744.0	Mm.393636	NM_001145100	ENSMUSG00000086598	Btbd18	Btbd18-ps|Gm13718	BTB (POZ) domain containing 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165883140-4	chr2	165883038	165883238	+	978.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001281926)	promoter-TSS (NM_001281926)	-860.0	NM_001281926	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-118141745-4	chr10	118141638	118141838	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010785)	promoter-TSS (NM_010785)	-49.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	3.37452870968328	3.78349186687352	4.46884585610891	3.33821867159678	3.26456565406997	1.98858731641158	3.08639958967334	1.84003948653359	-1.76304673751497	0.00938942526014882	0.10424521061499
Merged-chr9-61396822-2	chr9	61396722	61396922	+	741.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083927, intron 6 of 19)	intron (NM_001083927, intron 6 of 19)	24456.0	NM_001083927	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-67550006-4	chr11	67549917	67550117	+	888.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008088, intron 1 of 13)	MIRb|SINE|MIR	17019.0	NM_008088	14457.0	Mm.40338	NM_008088	ENSMUSG00000033066	Gas7	AW124766|B230343A10Rik|Gas7-cb	growth arrest specific 7	protein-coding	-0.304724194562098	-0.28471629253061	-0.291187009635654	-0.296234396407293	0.150038864360586	-0.283268512836655	0.859171457178808	-0.295349091101693	4.0714301118221	0.0889048616661289	1
Merged-chr7-120873136-3	chr7	120873040	120873240	+	977.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001267710, intron 2 of 17)	intron (NM_001267710, intron 2 of 17)	21951.0	NM_001267711	13631.0	Mm.25997	NM_007908	ENSMUSG00000035064	Eef2k	C86191|eEF-2K	eukaryotic elongation factor-2 kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-87298652-2	chr17	87298552	87298752	+	663.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028639, intron 3 of 19)	intron (NM_028639, intron 3 of 19)	15766.0	NM_028639	225049.0	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-148652271-1	chr5	148652171	148652371	+	546.0	f1_c57bl6.idr	Intergenic	Intergenic	-89569.0	NR_028285	70138.0	Mm.417834	NR_028285	ENSMUSG00000086494	2210417A02Rik	AV081004	RIKEN cDNA 2210417A02 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-127155753-2	chr6	127155653	127155853	+	660.400024	f1_balb.idr|f1_c57bl6.idr	intron (NR_040275, intron 1 of 1)	intron (NR_040275, intron 1 of 1)	-4705.0	NM_009829	12444.0	Mm.333406	NM_009829	ENSMUSG00000000184	Ccnd2	2600016F06Rik|AI256817|BF642806|C86853|Vin-1|Vin1|cD2	cyclin D2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127972570-2	chr7	127972470	127972670	+	549.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001347649, exon 6 of 15)	exon (NM_001347649, exon 6 of 15)	5091.0	NM_139149	233908.0	Mm.277680	NM_139149	ENSMUSG00000030795	Fus	D430004D17Rik|D930039C12Rik|Fus1|Tls	fused in sarcoma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-29090860-2	chr17	29090715	29090915	+	750.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001111099)	promoter-TSS (NM_001111099)	-164.0	NM_001111099	12575.0	Mm.195663	NM_007669	ENSMUSG00000023067	Cdkn1a	CAP20|CDKI|CIP1|Cdkn1|P21|SDI1|Waf1|mda6|p21Cip1|p21WAF	cyclin-dependent kinase inhibitor 1A (P21)	protein-coding	0.65538934754923	0.709065202359425	0.69203386820251	1.49428451172576	1.17448948512673	0.712837275642145	1.95585958949928	1.88056266685905	2.12180900341795	0.163362730420043	0.62621469877915
Merged-chr2-31785258-4	chr2	31785150	31785350	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001283046, intron 5 of 11)	intron (NM_001283046, intron 5 of 11)	25077.0	NM_001283045	11350.0	Mm.1318	NM_009594	ENSMUSG00000026842	Abl1	AI325092|Abl|E430008G22Rik|c-Abl	c-abl oncogene 1, non-receptor tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-47743378-1	chr9	47743278	47743478	+	687.0	f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	74830.0	NR_046048	100038460.0	Mm.447649	NR_046048		Gm10677	-	predicted gene 10677	ncRNA	1.67533075350306	1.00611534776963	0.516632467836518	0.734197782377738	2.05096144931248	0.536295849421467	0.520226652856066	0.506112525277337	0.223976709185	0.89161382686945	0.998431161219273
Merged-chr10-128034949-2	chr10	128034849	128035049	+	805.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113199)	promoter-TSS (NM_001113199)	-397.0	NM_013608	17938.0	Mm.3746	NM_013608	ENSMUSG00000061315	Naca	AL022831|AL024382|Gm1878|mKIAA0363|skNAC	nascent polypeptide-associated complex alpha polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-20423086-4	chr3	20422973	20423173	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55896.0	NM_175086	11608.0	Mm.134863	NM_175086	ENSMUSG00000054988	Agtr1b	AT1B|AT2R1B|Agtr-1b|Angtr-1b	angiotensin II receptor, type 1b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102628433-1	chr12	102628333	102628533	+	557.0	f0_c57.idr	intron (NM_172584, intron 2 of 9)	intron (NM_172584, intron 2 of 9)	56587.0	NR_035457	100316812.0		NR_035457	ENSMUSG00000089324	Mir1936	mir-1936|mmu-mir-1936	microRNA 1936	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-94658848-4	chr3	94658745	94658945	+	931.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011656)	promoter-TSS (NM_011656)	27.0	NM_001293728	22156.0	Mm.10214	NM_011656	ENSMUSG00000005968	Tuft1	-	tuftelin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-72820802-4	chr5	72820698	72820898	+	958.633301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013689, intron 3 of 17)	intron (NM_013689, intron 3 of 17)	47650.0	NM_001113461	21682.0	Mm.319581	NM_013689	ENSMUSG00000029217	Tec	-	tec protein tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-138372640-2	chr1	138372540	138372740	+	586.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	98902.0	NM_177397	338375.0	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-44782605-2	chr18	44782505	44782705	+	772.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085373, intron 1 of 18)	MTD|LTR|ERVL-MaLR	29577.0	NM_001085373	328949.0	Mm.312511	NM_001033406	ENSMUSG00000071856	Mcc	D18Ertd451e|E330037C19	mutated in colorectal cancers	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-119060741-2	chr10	119060641	119060841	+	682.8000490000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10242.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-21158986-4	chr13	21158886	21159086	+	878.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15931.0	NM_146534	258527.0	Mm.271440	NM_146534	ENSMUSG00000045474	Olfr1368	MOR256-15	olfactory receptor 1368	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-13090847-6	chr10	13090643	13090843	+	761.555542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_131912)	promoter-TSS (NR_131912)	-45.0	NM_009538	22634.0	Mm.287857	NM_009538	ENSMUSG00000019817	Plagl1	Lot1|Zac1	pleiomorphic adenoma gene-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89213974-4	chr3	89213873	89214073	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013604, exon 1 of 8)	exon (NM_013604, exon 1 of 8)	362.0	NM_013604	17827.0	Mm.280943	NM_013604	ENSMUSG00000064068	Mtx1	Gcap6|Mtx	metaxin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-67229319-2	chr16	67229219	67229419	+	558.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178721, intron 1 of 9)	intron (NM_178721, intron 1 of 9)	391589.0	NM_001347247	239857.0	Mm.394300	NM_178721	ENSMUSG00000064115	Cadm2	2900078E11Rik|9330131D06|A830029E02Rik|Igdf4d|Igsf4d|NECL3|SynCAM 2|SynCAM2	cell adhesion molecule 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-40732543-3	chr9	40732432	40732632	+	873.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133733, intron 1 of 6)	intron (NM_133733, intron 1 of 6)	46568.0	NM_133733	71566.0	Mm.280560	NM_133733	ENSMUSG00000032024	Clmp	9030425E11Rik|ACAM|ASP5|AW557819	CXADR-like membrane protein	protein-coding	2.93423021743473	3.41824466130889	1.92202535604535	2.29461285315474	4.23274040230742	4.04430495671147	2.87728879929935	4.1933108396007	1.81939716237193	0.00481432898075677	0.0649988587146884
Merged-chr1-152796981-4	chr1	152796861	152797061	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10B|LTR|ERVL	-3192.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-150834092-3	chr2	150834005	150834205	+	571.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151505, intron 12 of 12)	intron (NR_151505, intron 12 of 12)	8465.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-100166404-4	chr12	100166310	100166510	+	774.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER77B|LTR|ERVL	-6757.0	NM_183155	217827.0	Mm.224076	NM_183155	ENSMUSG00000021179	Nrde2	6720454P05Rik	nrde-2 necessary for RNA interference, domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-39487040-3	chr18	39486904	39487104	+	707.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008173, exon 1 of 8)	exon (NM_008173, exon 1 of 8)	241.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	1.56669860670184	0.85657110863529	1.50223568220664	1.45520203848487	0.814346016756273	0.859800168852986	1.51545406549921	1.76402555225998	-0.211947657622221	0.880202154191886	0.998431161219273
Merged-chr2-164921759-2	chr2	164921659	164921859	+	548.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10009.0	NM_199027	329559.0	Mm.330776	NM_199027	ENSMUSG00000039834	Zfp335	1810045J01Rik|NIF-1|Nif1|Znf335	zinc finger protein 335	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-59567323-4	chr9	59567211	59567411	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11026.0	NM_175235	76183.0	Mm.265415	NM_175235	ENSMUSG00000032297	Celf6	6330569O16Rik|Brunol6	CUGBP, Elav-like family member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26973119-4	chr17	26973026	26973226	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001005916)	promoter-TSS (NM_001005916)	-53.0	NM_001005916	474156.0	Mm.328890	NM_001005916	ENSMUSG00000079605	Zbtb9	3930402F13Rik	zinc finger and BTB domain containing 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-112273146-2	chr5	112273046	112273246	+	757.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3545.0	NM_001326590	22022.0	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-52507107-2	chr15	52507007	52507207	+	796.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-205338.0	NM_027212	69790.0	Mm.195562	NM_027212	ENSMUSG00000038622	Med30	1810038N03Rik|2510044J04Rik|TRAP25|Thrap6	mediator complex subunit 30	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-8351477-4	chr5	8351374	8351574	+	953.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001007220, intron 2 of 28)	intron (NM_001007220, intron 2 of 28)	16686.0	NM_001007221	11496.0	Mm.275895	NM_001007220	ENSMUSG00000040537	Adam22	2900022I03Rik|AI854032|MDC2	a disintegrin and metallopeptidase domain 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-105561117-2	chr5	105561017	105561217	+	828.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133897, intron 2 of 3)	intron (NM_133897, intron 2 of 3)	41646.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166420485-4	chr2	166420386	166420586	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26965.0	NR_015558	319684.0	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-154156859-2	chr3	154156759	154156959	+	560.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081263, intron 1 of 21)	RSINE1|SINE|B4	173701.0	NM_010713	16875.0	Mm.15530	NM_010713	ENSMUSG00000096225	Lhx8	L3|Lhx7	LIM homeobox protein 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-133045497-2	chr7	133045397	133045597	+	816.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009980, intron 2 of 10)	intron (NM_009980, intron 2 of 10)	-30250.0	NM_001170744	13017.0	Mm.246240	NM_009980	ENSMUSG00000030970	Ctbp2	AA407280|D7Ertd45e|Gtrgeo6|Ribeye	C-terminal binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80040509-2	chr10	80040409	80040609	+	824.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025554)	promoter-TSS (NM_025554)	-850.0	NM_025554	66420.0	Mm.18579	NM_025554	ENSMUSG00000004667	Polr2e	2410021N14Rik|25kDa|AW208866|RPB5|XAP4	polymerase (RNA) II (DNA directed) polypeptide E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35256624-2	chr17	35256524	35256724	+	969.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5335.0	NR_106169	102465886.0		NR_106169	ENSMUSG00000098269	Mir8094	Gm27513|mmu-mir-8094	microRNA 8094	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-62856408-4	chr13	62856302	62856502	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007994, intron 1 of 6)	intron (NM_007994, intron 1 of 6)	1968.0	NM_007994	14120.0	Mm.391871	NM_007994	ENSMUSG00000021456	Fbp2	Fbp-1|Fbp1|Rae-30	fructose bisphosphatase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-147231983-1	chr4	147231883	147232083	+	540.0	f1_balb.idr	intron (NM_001039209, intron 1 of 2)	B1_Mus1|SINE|Alu	56117.0	NM_001039209	195531.0	Mm.270762	NM_001039209	ENSMUSG00000078496	Zfp982	Gm13152	zinc finger protein 982	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-93081755-4	chr16	93081646	93081846	+	635.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-255672.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-37704144-2	chr19	37704044	37704244	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6336.0	NM_007811	13082.0	Mm.42230	NM_007811	ENSMUSG00000024987	Cyp26a1	Cyp26|P450RA|P450RAI|RAH	cytochrome P450, family 26, subfamily a, polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-57838908-2	chr15	57838808	57839008	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_199449, exon 4 of 4)	3' UTR (NM_199449, exon 4 of 4)	53510.0	NM_024207	67819.0	Mm.289387	NM_024207	ENSMUSG00000022365	Derl1	1110021N07Rik|AI195141|AW551338|Derlin-1	Der1-like domain family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43520132-4	chr4	43520035	43520235	+	930.025024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001277875, intron 2 of 8)	intron (NM_001277875, intron 2 of 8)	3419.0	NM_009416	22004.0	Mm.646	NM_009416	ENSMUSG00000028464	Tpm2	Tpm-2|Trop-2	tropomyosin 2, beta	protein-coding	2.37488724899193	2.22936703657456	1.48734022178409	2.80574590319604	2.68437923755469	3.00848134781801	2.71158558446353	3.19340549942774	1.20541577037103	0.127547146028942	0.55901813510261
Merged-chr11-58914880-2	chr11	58914787	58914987	+	751.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3170.0	NM_138678	192194.0	Mm.22540	NM_138678	ENSMUSG00000020490	Btnl10	BUTR-1|Butr1	butyrophilin-like 10	protein-coding	-1.56355737717652	-1.81244775989375	-1.82128546162293	-1.82854501295842	-1.83962066705452	-1.81053259306168	-1.81928479966835	-1.82724555674025	-1.28500227969968	0.715751224811686	1
Merged-chr18-9507902-3	chr18	9507785	9507985	+	780.244446	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57731.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	0.818760934483891	0.687178178091793	0.675045094706503	1.64814535398284	0.824543738379856	1.09907854553559	1.44679193449551	1.28311758695073	0.556199201942056	0.70284691009239	0.998431161219273
Merged-chr13-112801516-3	chr13	112801420	112801620	+	868.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008903, intron 1 of 5)	intron (NM_008903, intron 1 of 5)	743.0	NM_008247	19012.0	Mm.291029	NM_008247	ENSMUSG00000021759	Plpp1	Hic53|Hpic53|LPP-1|LPP1|PAP-2a|PAP2-alpha|PAP2a|Ppap2a|mPAP	phospholipid phosphatase 1	protein-coding	1.22108603762554	1.66176055261412	1.85039842832016	1.56642766247462	1.72059054690697	1.33035713405603	1.86514877017771	1.6972690753998	0.25758069841101	0.812519953512452	0.998431161219273
Merged-chr8-66495886-4	chr8	66495782	66495982	+	943.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9352.0	NM_001357208	66282.0	Mm.294985	NM_025465	ENSMUSG00000025591	Tma16	1810029B16Rik	translation machinery associated 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-88710972-2	chr4	88710872	88711072	+	699.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11536.0	NM_172871	242521.0	Mm.260601	NM_172871	ENSMUSG00000070923	Klhl9	8030469P05|C530050O22Rik|mKIAA1354	kelch-like 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106098470-3	chr11	106098339	106098539	+	769.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011947, intron 2 of 15)	intron (NM_011947, intron 2 of 15)	13537.0	NM_011947	26406.0	Mm.27041	NM_011947	ENSMUSG00000020700	Map3k3	AW548911|MAPKKK3|Mekk3|mKIAA4031	mitogen-activated protein kinase kinase kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-109471496-3	chr11	109471420	109471620	+	880.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029842, intron 1 of 5)	intron (NM_001029842, intron 1 of 5)	1709.0	NM_134038	104681.0	Mm.265874	NM_134038	ENSMUSG00000041920	Slc16a6	AW743111|ESTM12|MCT 6|MCT 7|MCT6	solute carrier family 16 (monocarboxylic acid transporters), member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-84714295-3	chr2	84714202	84714402	+	847.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144887, intron 1 of 11)	intron (NM_144887, intron 1 of 11)	862.0	NM_144887	228136.0	Mm.288508	NM_144887	ENSMUSG00000034075	Zdhhc5	1110032A17Rik|AI451382|Zisp	zinc finger, DHHC domain containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-154654432-2	chr2	154654332	154654532	+	573.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2594.0	NM_029362	75608.0	Mm.262480	NM_029362	ENSMUSG00000038467	Chmp4b	2010012F05Rik|C76846|Snf7-2	charged multivesicular body protein 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-96941480-2	chr5	96941454	96941654	+	624.0	f0_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20282.0	NR_131152	666266.0	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	0.26930798551688	1.34105368251226	0.290387061774414	0.282550119545364	0.27129697715306	0.302633580540022	0.970028570182833	1.03086790109512	0.169220228854067	0.931077268444658	1
Merged-chr4-132063225-3	chr4	132063126	132063326	+	885.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183428, intron 1 of 20)	L2a|LINE|L2	8871.0	NM_183428	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114912584-2	chr11	114912484	114912684	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21802.0	NM_001347651	217304.0	Mm.185355	NM_199221	ENSMUSG00000063193	Cd300lb	CLM-7|Clm7|Gm253|LMIR5	CD300 molecule like family member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107597689-4	chr9	107597593	107597793	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_111986)	TTS (NR_111986)	7709.0	NM_009153	20347.0	Mm.4083	NM_009153	ENSMUSG00000057969	Sema3b	SemA|Semaa|sema5|semaV	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-12206492-4	chr2	12206298	12206498	+	826.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001309, intron 13 of 29)	RLTR9C|LTR|ERVK	-94848.0	NR_040353	338535.0	Mm.483275	NR_040353	ENSMUSG00000086843	E030013I19Rik	-	RIKEN cDNA E030013I19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-87461168-2	chr6	87461068	87461268	+	801.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037727, intron 10 of 10)	intron (NM_001037727, intron 10 of 10)	32174.0	NM_009756	12154.0	Mm.483321	NM_009756	ENSMUSG00000030046	Bmp10	b2b2711Clo	bone morphogenetic protein 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-45984827-4	chr9	45984748	45984948	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357246)	promoter-TSS (NM_001357246)	23.0	NM_001357246	18475.0	Mm.200859	NM_008775	ENSMUSG00000003131	Pafah1b2	2610005M20Rik|AI747451|AU021353|Pafahb|mus[b]	platelet-activating factor acetylhydrolase, isoform 1b, subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31323953-4	chr14	31323841	31324041	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033668)	promoter-TSS (NM_001033668)	-45.0	NM_001033668	110084.0	Mm.101811	NM_001033668	ENSMUSG00000019027	Dnah1	B230373P09Rik|Dnahc1|E030034C22Rik|MDHC7	dynein, axonemal, heavy chain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-31814241-4	chr5	31814157	31814357	+	889.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144541, intron 4 of 11)	intron (NM_144541, intron 4 of 11)	116207.0	NM_144541	107976.0	Mm.482126	NM_144541	ENSMUSG00000052139	Babam2	6030405P19Rik|AI429776|B830038C02Rik|Bre	BRISC and BRCA1 A complex member 2	protein-coding	4.54067750401927	3.95963532350384	2.74820106035023	4.03990802900618	3.87177061869989	4.62184137622184	3.07273342320823	4.00199417219617	0.0336224009689817	0.95135350913481	0.998431161219273
Merged-chr9-36770350-1	chr9	36770250	36770450	+	603.0	f1_balb.idr	Intergenic	B1_Mm|SINE|Alu	-2772.0	NM_008408	16430.0	Mm.2863	NM_008408	ENSMUSG00000032116	Stt3a	AA408947|BB081708|Itm1	STT3, subunit of the oligosaccharyltransferase complex, homolog A (S. cerevisiae)	protein-coding	0.598265190801898	0.641400397080138	0.627596008439341	1.57519486521821	1.1982446887146	1.72678063470493	0.630666388061723	1.27646939611027	1.21941398235981	0.447329864495737	0.914498173479176
Merged-chr2-131210421-4	chr2	131210279	131210479	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291032)	promoter-TSS (NM_001291032)	19.0	NR_110992	69596.0	Mm.2937	NM_027129	ENSMUSG00000068264	Ap5s1	0610038L13Rik|2310035K24Rik|AW060727|sigma5	adaptor-related protein 5 complex, sigma 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-80066991-2	chr12	80066891	80067091	+	556.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	46022.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119047652-2	chr11	119047545	119047745	+	989.916626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6732.0	NM_013926	30951.0	Mm.99953	NM_013926	ENSMUSG00000025578	Cbx8	Pc3	chromobox 8	protein-coding	1.79263695158897	1.93851235130668	1.16560832190833	0.929511755465221	0.909117501257534	1.40487181349839	1.77361787583895	1.81727637273529	-0.0103055291182093	0.993575819553201	0.998431161219273
Merged-chr1-171248879-6	chr1	171248772	171248972	+	903.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1257.0	NM_172845	240913.0	Mm.491147	NM_172845	ENSMUSG00000006403	Adamts4	ADAM-TS4|ADAMTS-2|ADMP-1	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-40652403-2	chr9	40652303	40652503	+	655.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-33561.0	NM_133733	71566.0	Mm.280560	NM_133733	ENSMUSG00000032024	Clmp	9030425E11Rik|ACAM|ASP5|AW557819	CXADR-like membrane protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115665805-1	chr11	115665705	115665905	+	545.0	f1_balb.idr	intron (NM_001313936, intron 2 of 5)	PB1D9|SINE|Alu	33729.0	NM_001313937	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46394959-2	chr8	46394859	46395059	+	635.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J1|LTR|ERVL-MaLR	-76078.0	NM_007981	14081.0	Mm.210323	NM_007981	ENSMUSG00000018796	Acsl1	Acas|Acas1|Acs|FACS|Facl2|LACS 1|LACS1	acyl-CoA synthetase long-chain family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-88554296-4	chr5	88554204	88554404	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023054)	promoter-TSS (NM_023054)	-158.0	NM_023054	65961.0	Mm.490364	NM_023054	ENSMUSG00000070697	Utp3	2400011K09Rik|AW557551|C87704|Crl-1|Crl1|Crlz1|Sas10	UTP3 small subunit processome component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-160318452-4	chr2	160318353	160318553	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033411, intron 1 of 2)	intron (NM_001033411, intron 1 of 2)	9041.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117072531-4	chr10	117072412	117072612	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177798, exon 10 of 10)	3' UTR (NM_177798, exon 10 of 10)	-8660.0	NM_007636	12461.0	Mm.247788	NM_007636	ENSMUSG00000034024	Cct2	Cctb	chaperonin containing Tcp1, subunit 2 (beta)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-40956677-4	chr14	40956585	40956785	+	988.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145928, intron 1 of 8)	intron (NM_145928, intron 1 of 8)	-8476.0	NM_001316748	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70597798-2	chr8	70597698	70597898	+	839.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_023627)	TTS (NM_023627)	3317.0	NM_023627	71780.0	Mm.29357	NM_023627	ENSMUSG00000019139	Isyna1	1300017C10Rik|AU018670	myo-inositol 1-phosphate synthase A1	protein-coding	1.32636666967419	0.815397528175308	1.66694704125076	1.51470731882172	0.949882613857168	1.04415078582313	0.804973746819659	1.71069725140299	-0.687772305147218	0.61744264598798	0.977517868708383
Merged-chr1-192981955-2	chr1	192981828	192982028	+	962.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301370, intron 3 of 8)	intron (NM_001301370, intron 3 of 8)	53847.0	NM_001301370	329324.0	Mm.76710	NM_181546	ENSMUSG00000016200	Syt14	B230320I09Rik|sytXIV	synaptotagmin XIV	protein-coding	2.06971379169256	2.14336844281633	1.23957929931086	1.01807121331691	1.41738430169678	0.832526594549253	1.05417397099632	0.797600178198014	-2.3381601869557	0.079497167889148	0.429028635274999
Merged-chr14-70055322-4	chr14	70055236	70055436	+	847.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028560, intron 6 of 6)	intron (NM_028560, intron 6 of 6)	-22109.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153275803-2	chr2	153275703	153275903	+	919.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur3|SINE|Alu	-15613.0	NM_008444	16569.0	Mm.315560	NM_008444	ENSMUSG00000027475	Kif3b	AI854312|AW549267|mKIAA0359	kinesin family member 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-32508327-1	chr9	32508227	32508427	+	834.0	f0_balb.idr	intron (NM_008026, intron 1 of 8)	intron (NM_008026, intron 1 of 8)	33125.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-68994604-2	chr8	68994495	68994695	+	728.375	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4A|LINE|L1	-94141.0	NM_007509	11966.0	Mm.249096	NM_007509	ENSMUSG00000006273	Atp6v1b2	AI194269|AI790362|Atp6b2|HO57|R74844	ATPase, H+ transporting, lysosomal V1 subunit B2	protein-coding	2.23604934861196	1.29426112517784	2.20359666342268	0.994181052129833	2.2564238278073	1.3029544509392	1.78060626169407	0.997425583477582	-0.324268116407387	0.79239838882233	0.998431161219273
Merged-chr12-69573848-2	chr12	69573748	69573948	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9180.0	NM_001033236	207965.0	Mm.102487	NM_001033236	ENSMUSG00000049882	Vcpkmt	Gm71|Mettl21d|Mettl221d|VCP-KMT	valosin containing protein lysine (K) methyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-64278970-4	chr15	64278873	64279073	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 3 of 28)	intron (NM_001276461, intron 3 of 28)	33700.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166827692-2	chr2	166827592	166827792	+	696.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085495, intron 3 of 38)	intron (NM_001085495, intron 3 of 38)	22111.0	NM_001085495	99371.0	Mm.297192	NM_001085495	ENSMUSG00000074582	Arfgef2	AI463430|AW493672|BIG2|E230011G24Rik	ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-119027292-2	chr10	119027192	119027392	+	604.166626	f1_balb.idr|f1_c57bl6.idr	TTS (NR_152787)	TTS (NR_152787)	23207.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115234635-2	chr11	115234521	115234721	+	808.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033393, intron 9 of 9)	intron (NM_001033393, intron 9 of 9)	32622.0	NM_010350	14813.0	Mm.39090	NM_010350	ENSMUSG00000020734	Grin2c	GluN2C|NMDAR2C|NR2C	glutamate receptor, ionotropic, NMDA2C (epsilon 3)	protein-coding	-2.18243820993087	-2.15538464093652	-2.16356586349869	-2.17028616330028	-2.18053909940952	-2.15361173587851	-2.16171381403791	-2.0403552525549	0.759018020146679	0.829933115115583	1
Merged-chr4-122902348-4	chr4	122902232	122902432	+	826.18335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER12B|LTR|ERVK	-16256.0	NM_001358036	12331.0	Mm.8687	NM_007598	ENSMUSG00000028656	Cap1	-	CAP, adenylate cyclase-associated protein 1 (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-53130615-3	chr9	53130514	53130714	+	670.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029936, intron 16 of 17)	intron (NM_029936, intron 16 of 17)	117498.0	NM_029936	77591.0	Mm.133560	NM_029936	ENSMUSG00000053289	Ddx10	4632415A01Rik|AI646054	DEAD (Asp-Glu-Ala-Asp) box polypeptide 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-96554752-4	chr9	96554658	96554858	+	917.033325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053268, intron 17 of 23)	intron (NM_053268, intron 17 of 23)	-76083.0	NM_001311135	19823.0	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132009962-4	chr4	132009862	132010062	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183428, intron 1 of 20)	intron (NM_183428, intron 1 of 20)	39116.0	NM_001128606	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-118431730-3	chr14	118431590	118431790	+	946.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	65812.0	NR_045624	73306.0	Mm.362328	NR_045624	ENSMUSG00000099911	1700044C05Rik	-	RIKEN cDNA 1700044C05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-61817888-1	chr14	61817788	61817988	+	622.0	f0_balb.idr	Intergenic	Intergenic	-135515.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-9953116-4	chr1	9953013	9953213	+	982.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8995.0	NR_024067	73824.0	Mm.28311	NR_024067	ENSMUSG00000098234	Snhg6	1110008H02Rik	small nucleolar RNA host gene 6	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-88565821-4	chr5	88565708	88565908	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289774, intron 1 of 17)	CpG	768.0	NM_001289775	52822.0	Mm.270469	NM_027530	ENSMUSG00000029291	Rufy3	2810428M05Rik|6330416M07Rik|AW455998|AW538594|D5Bwg0860e|Ripx|Rpipx	RUN and FYVE domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-49627188-4	chr4	49627088	49627288	+	902.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4872.0	NM_001163263	109331.0	Mm.24765	NM_182999	ENSMUSG00000028309	Rnf20	4833430L21Rik|AW540162|C79397|mKIAA4116	ring finger protein 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-25203794-4	chr12	25203692	25203892	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	74618.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	4.11488406010611	4.1910440950244	3.70244547483034	3.88584169439478	4.59463468201453	3.93937365318304	3.23640983807866	3.96814778272511	0.0639008502289358	0.894152650883868	0.998431161219273
Merged-chr13-60628523-2	chr13	60628423	60628623	+	714.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	26312.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-45513564-3	chr4	45513468	45513668	+	908.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033306, intron 1 of 5)	intron (NM_001033306, intron 1 of 5)	17260.0	NM_001033306	230126.0	Mm.251716	NM_001033306	ENSMUSG00000044813	Shb	BC028832	src homology 2 domain-containing transforming protein B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-117886283-3	chr4	117886200	117886400	+	638.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_033617, exon 3 of 8)	exon (NM_033617, exon 3 of 8)	1029.0	NM_033617	114143.0	Mm.207052	NM_033617	ENSMUSG00000033379	Atp6v0b	2310024H13Rik|Atp6f|VMA16	ATPase, H+ transporting, lysosomal V0 subunit B	protein-coding	-0.0127271679509914	0.00372998562529991	-0.00166090333871829	-0.00582046528276561	0.55651456724286	0.50339882548566	-0.000471878245787177	0.531674993485935	4.00514114961175	0.0674500840625141	1
Merged-chr4-3709663-2	chr4	3709563	3709763	+	831.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 1 of 12)	intron (NM_001111096, intron 1 of 12)	-5301.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89877455-2	chr3	89877355	89877555	+	594.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010559, intron 8 of 9)	intron (NM_010559, intron 8 of 9)	35741.0	NM_001310676	16194.0	Mm.2856	NM_010559	ENSMUSG00000027947	Il6ra	CD126|IL-6R|IL-6R-alpha|IL-6RA|Il6r	interleukin 6 receptor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-94557244-1	chr4	94557144	94557344	+	641.0	f1_c57bl6.idr	promoter-TSS (NM_026368)	promoter-TSS (NM_026368)	-448.0	NM_026368	67770.0	Mm.35170	NM_026368	ENSMUSG00000028578	Caap1	5830433M19Rik|AI536248|CAAP	caspase activity and apoptosis inhibitor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-76399873-4	chr16	76399752	76399952	+	963.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26025.0	NM_001358238	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69168954-2	chr11	69168854	69169054	+	709.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009659, intron 13 of 14)	intron (NM_009659, intron 13 of 14)	11882.0	NM_009659	11686.0	Mm.340329	NM_009659	ENSMUSG00000032807	Alox12b	12R-LOX|Aloxe2|e-LOX2	arachidonate 12-lipoxygenase, 12R type	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-170154374-4	chr2	170154246	170154446	+	728.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11671.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-119220405-3	chr9	119220318	119220518	+	729.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_033303)	TTS (NR_033303)	11274.0	NR_033303	109280.0	Mm.261557	NM_175420	ENSMUSG00000092212	Slc22a13b-ps	9330176C04Rik|Slc22a13b	solute carrier family 22 (organic cation transporter), member 13b, pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-53797099-1	chr19	53796999	53797199	+	543.0	f1_c57bl6.idr	intron (NM_001170847, intron 1 of 13)	intron (NM_001170847, intron 1 of 13)	-95132.0	NM_011050	18569.0	Mm.1605	NM_011050	ENSMUSG00000024975	Pdcd4	D19Ucla1|Ma3|Tis	programmed cell death 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-29246763-4	chr6	29246651	29246851	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25737.0	NM_001190461	69573.0	Mm.45161	NM_023516	ENSMUSG00000043421	Hilpda	2310016C08Rik|AW049004|Hig2	hypoxia inducible lipid droplet associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-32956478-3	chr19	32956357	32956557	+	738.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	198880.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-5874932-4	chr13	5874844	5875044	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13455.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102436109-4	chr12	102435925	102436125	+	872.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011175, intron 1 of 13)	B1_Mur4|SINE|Alu	3788.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-65697324-3	chr5	65697233	65697433	+	910.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081321, intron 1 of 31)	CpG-11111	523.0	NM_001081321	71521.0	Mm.278974	NM_027818	ENSMUSG00000029202	Pds5a	9030416H16Rik|E230024D05Rik|mKIAA0648	PDS5 cohesin associated factor A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95685762-2	chr3	95685662	95685862	+	656.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301705, intron 1 of 17)	intron (NM_001301705, intron 1 of 17)	2155.0	NM_144899	229595.0	Mm.490574	NM_144899	ENSMUSG00000015850	Adamtsl4	ADAMTSL-4|Tsrc1	ADAMTS-like 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-88278016-4	chr7	88277897	88278097	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311790)	promoter-TSS (NM_001311790)	-88.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5634881-2	chr17	5634781	5634981	+	590.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	142281.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-84311949-4	chr18	84311873	84312073	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033341, intron 8 of 8)	intron (NM_001033341, intron 8 of 8)	223815.0	NM_146090	225791.0	Mm.147052	NM_146090	ENSMUSG00000049090	Zadh2	C530046K17Rik|PTGR-3|Pthr3	zinc binding alcohol dehydrogenase, domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-75408016-4	chr9	75407899	75408099	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015806, intron 1 of 5)	intron (NM_015806, intron 1 of 5)	1360.0	NM_027418	50772.0	Mm.480076	NM_015806	ENSMUSG00000042688	Mapk6	2610021I23Rik|D130053K17Rik|Erk3|Mapk4|Mapk63|Prkm4|Prkm6	mitogen-activated protein kinase 6	protein-coding	4.40750889221486	3.59518855625868	4.04003329302461	4.69154918466665	4.54799640997341	4.20462434504172	3.85499890216317	3.65668289205514	-0.184122979136912	0.687810946698725	0.996533206832645
Merged-chr10-94122751-4	chr10	94122651	94122851	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053072, intron 9 of 20)	intron (NM_053072, intron 9 of 20)	-25180.0	NM_011629	22025.0	Mm.107483	NM_011629	ENSMUSG00000005897	Nr2c1	4831444H07Rik|80.3|Eenr|TR2|Tr2-11	nuclear receptor subfamily 2, group C, member 1	protein-coding	5.87949365770009	5.24899515671129	5.51648384592898	5.93153889336466	5.52487231110353	5.84859406961784	5.37212161449379	5.70898122281698	-0.0651776557111795	0.809520416654164	0.998431161219273
Merged-chr10-40024872-1	chr10	40024772	40024972	+	577.0	f0_balb.idr	intron (NM_144821, intron 1 of 3)	CpG	396.0	NM_144821	215929.0	Mm.55513	NM_144821	ENSMUSG00000038522	Mfsd4b1	AI317395|AI482555|Naglt1a	major facilitator superfamily domain containing 4B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30416128-4	chr2	30416035	30416235	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007760)	promoter-TSS (NM_007760)	85.0	NM_138748	110854.0	Mm.275393	NM_138748	ENSMUSG00000039515	Ptpa	2610042B21Rik|C77440|N28142|PR53|Ppp2r4	protein phosphatase 2 protein activator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-185355262-1	chr1	185355162	185355362	+	618.0	f1_c57bl6.idr	intron (NM_001347210, intron 9 of 9)	MTC|LTR|ERVL-MaLR	-7782.0	NM_029735	107508.0	Mm.154511	NM_029735	ENSMUSG00000026615	Eprs	2410081F06Rik|3010002K18Rik|C79379|Qprs	glutamyl-prolyl-tRNA synthetase	protein-coding	0.178439965729182	-0.315439305508447	0.58096397571733	-0.324654758908259	-0.33036876253916	-0.314272610055453	-0.319483690467466	-0.323950658406304	-3.82439514196963	0.127397180350474	1
Merged-chr7-143465117-4	chr7	143465018	143465218	+	960.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4068.0	NM_001161624	12577.0	Mm.168789	NM_009876	ENSMUSG00000037664	Cdkn1c	AL024410|CDKI|Kip2|p57(kip2)|p57Kip2	cyclin-dependent kinase inhibitor 1C (P57)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32700277-2	chr2	32700177	32700377	+	720.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17B|LTR|ERVK	-6102.0	NM_010236	14287.0	Mm.3830	NM_010236	ENSMUSG00000009566	Fpgs	AA408187	folylpolyglutamyl synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-73478649-2	chr6	73478549	73478749	+	797.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7628.0	NR_108032	73408.0	Mm.233629	NR_108032	ENSMUSG00000107408	1700065L07Rik	-	RIKEN cDNA 1700065L07 gene	ncRNA	0.876542283324776	0.552553195342966	0.5364036943717	1.88581985058851	0.886259015751321	0.556127019921277	0.54000825181967	1.89876971120364	0.0302086991104833	0.985100870480306	0.998431161219273
Merged-chr17-73941387-2	chr17	73941287	73941487	+	693.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011723, intron 2 of 35)	intron (NM_011723, intron 2 of 35)	8809.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-99803695-2	chr14	99803595	99803795	+	784.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CAAAA)n|Simple_repeat|Simple_repeat	346101.0	NM_010636	16597.0	Mm.396499	NM_010636	ENSMUSG00000072294	Klf12	2700063E05Rik|AI225908|AI315654|AP-2rep|B130052C06Rik|D530033K05Rik	Kruppel-like factor 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106674820-4	chr11	106674713	106674913	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305158, intron 12 of 14)	intron (NM_001305158, intron 12 of 14)	40468.0	NM_001305158	18613.0	Mm.343951	NM_008816	ENSMUSG00000020717	Pecam1	C85791|Cd31|PECAM-1|Pecam	platelet/endothelial cell adhesion molecule 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-46674317-4	chr17	46674214	46674414	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144857)	promoter-TSS (NM_144857)	-59.0	NM_144857	224823.0	Mm.45101	NM_144857	ENSMUSG00000023971	Rrp36	-	ribosomal RNA processing 36 homolog (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-34667116-3	chr16	34667062	34667262	+	797.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030744, intron 2 of 5)	intron (NM_030744, intron 2 of 5)	15951.0	NM_030744	76378.0	Mm.23515	NM_030744	ENSMUSG00000022832	Ropn1	1700008N21Rik|ODF6|RHPNAP1|Rppn|ropporin	ropporin, rhophilin associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-55449505-2	chr12	55449405	55449605	+	667.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43142.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-195023630-2	chr1	195023530	195023730	+	553.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_015566, exon 5 of 8)	non-coding (NR_015566, exon 5 of 8)	6231.0	NR_015566	320977.0	Mm.99905	NR_015566	ENSMUSG00000096929	A330023F24Rik	C030002C11Rik	RIKEN cDNA A330023F24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-135686708-4	chr3	135686607	135686807	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008689, intron 1 of 24)	intron (NM_008689, intron 1 of 24)	4840.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-21198774-3	chr16	21198668	21198868	+	793.583313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6027.0	NM_010143	13845.0	Mm.6972	NM_010143	ENSMUSG00000005958	Ephb3	AW456895|Cek10|Etk2|HEK2|MDK5|Sek4|Tyro6	Eph receptor B3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-3355780-2	chr8	3355680	3355880	+	599.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033378, intron 1 of 10)	intron (NM_001033378, intron 1 of 10)	2365.0	NM_001033378	319493.0	Mm.234565	NM_001033378	ENSMUSG00000074497	A430078G23Rik	-	RIKEN cDNA A430078G23 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-25895645-2	chr17	25895545	25895745	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_139154, intron 2 of 6)	intron (NM_139154, intron 2 of 6)	6582.0	NR_028042	100043160.0	Mm.482893	NR_028042		Gm10012	-	cytochrome c oxidase, subunit VIIc pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-73808397-3	chr6	73808287	73808487	+	823.483337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-337366.0	NR_108032	73408.0	Mm.233629	NR_108032	ENSMUSG00000107408	1700065L07Rik	-	RIKEN cDNA 1700065L07 gene	ncRNA	1.94641411452837	2.47206569480838	2.61845580000594	2.64182144986534	2.22473925090072	3.09175553346317	1.94049398862372	2.55853828435259	0.177107903096417	0.827194264553767	0.998431161219273
Merged-chr2-120158314-4	chr2	120158202	120158402	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB2|LINE|L1	-3727.0	NM_133838	98878.0	Mm.132226	NM_133838	ENSMUSG00000027293	Ehd4	2210022F10Rik|AI197390|AI846352|AV006278|Past2	EH-domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-12473056-2	chr13	12472956	12473156	+	582.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_133643, exon 6 of 6)	3' UTR (NM_133643, exon 6 of 6)	-11318.0	NM_001291057	56048.0	Mm.474138	NM_018886	ENSMUSG00000057554	Lgals8	1200015E08Rik|AI326142|D13Ertd524e|Lgals-8	lectin, galactose binding, soluble 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-126475946-4	chr2	126475858	126476058	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359975, intron 3 of 27)	intron (NM_001359975, intron 3 of 27)	15595.0	NM_001080944	241633.0	Mm.222235	NM_001080944	ENSMUSG00000060131	Atp8b4	Im	ATPase, class I, type 8B, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-4218564-2	chr11	4218464	4218664	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028022, intron 1 of 8)	CpG	313.0	NM_028022	71962.0	Mm.7852	NM_028022	ENSMUSG00000020424	Gatsl3	2410008K03Rik|Castor1	GATS protein-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-115753564-2	chr14	115753464	115753664	+	585.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175500, intron 6 of 7)	L1_Mur3|LINE|L1	-344012.0	NR_045761	75088.0	Mm.444706	NR_045761	ENSMUSG00000093551	4930505G20Rik	-	RIKEN cDNA 4930505G20 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-43806585-3	chr2	43806475	43806675	+	875.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301831, intron 2 of 14)	intron (NM_001301831, intron 2 of 14)	57751.0	NM_001301831	76117.0	Mm.217350	NM_153820	ENSMUSG00000049744	Arhgap15	5830480G12Rik	Rho GTPase activating protein 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-77303412-2	chr12	77303312	77303512	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252614, intron 3 of 12)	RLTR28|LTR|ERVL	64673.0	NR_045554	53618.0	Mm.35628	NM_016893	ENSMUSG00000021065	Fut8	-	fucosyltransferase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3301595-4	chr12	3301491	3301691	+	818.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016676, intron 1 of 5)	intron (NM_016676, intron 1 of 5)	8378.0	NM_016676	19325.0	Mm.378993	NM_016676	ENSMUSG00000020671	Rab10	AW107754	RAB10, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-63120765-2	chr14	63120665	63120865	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-1697.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-128973948-4	chr4	128973896	128974096	+	721.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-11541.0	NM_001301841	242669.0	Mm.215814	NM_172875	ENSMUSG00000028789	Azin2	4933429I20Rik|Adc|Azi2|B930082O19|ODC-p|Odcp	antizyme inhibitor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-15395527-4	chr9	15395416	15395616	+	926.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	G-rich|Low_complexity|Low_complexity	-37728.0	NM_176976	319675.0	Mm.218317	NM_176976	ENSMUSG00000046111	Cep295	5830418K08Rik|5832426L23Rik|Gm1131|Kiaa1731	centrosomal protein 295	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5711415-2	chr19	5711310	5711510	+	719.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114595, intron 11 of 17)	intron (NM_001114595, intron 11 of 17)	6939.0	NM_010609	16530.0	Mm.440033	NM_010609	ENSMUSG00000024936	Kcnk7	2310014G03Rik|Kcnk6|Kcnk8|Knot|Mlk3	potassium channel, subfamily K, member 7	protein-coding	2.21405885678006	2.29045173868845	1.64178213975332	1.59747392706497	2.14433153042808	2.7729243546901	1.1961696961679	1.60532775149077	0.257603662578505	0.803391187602547	0.998431161219273
Merged-chr11-9531052-4	chr11	9530955	9531155	+	886.866699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178259, intron 45 of 61)	intron (NM_178259, intron 45 of 61)	339113.0	NM_178259	268379.0	Mm.39270	NM_178259	ENSMUSG00000004668	Abca13	9830132L24|A930002G16Rik|AI956815	ATP-binding cassette, sub-family A (ABC1), member 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-121116106-4	chr8	121116025	121116225	+	937.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013519)	promoter-TSS (NM_013519)	-46.0	NM_013519	14234.0	Mm.14092	NM_013519	ENSMUSG00000046714	Foxc2	Fkh14|Hfhbf3|MFH-1|Mfh1	forkhead box C2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107612866-4	chr9	107612755	107612955	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-3614.0	NM_001291539	20347.0	Mm.4083	NM_009153	ENSMUSG00000057969	Sema3b	SemA|Semaa|sema5|semaV	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B	protein-coding	4.68345119154357	4.53630065003648	5.17783885791409	4.07482655689734	4.88928591418386	5.39954570355806	5.42712895261914	5.44529478803106	0.751686896262877	0.029570267414053	0.234852649007375
Merged-chr10-57721795-2	chr10	57721695	57721895	+	953.7000119999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_008863, intron 4 of 5)	B1_Mm|SINE|Alu	-63128.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-133128160-2	chr1	133128060	133128260	+	789.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3006.0	NM_133819	108954.0	Mm.293628	NM_133819	ENSMUSG00000046062	Ppp1r15b	1810033K10Rik|AI606441|C530022L24Rik|CReP	protein phosphatase 1, regulatory (inhibitor) subunit 15b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5221871-2	chr17	5221771	5221971	+	602.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 4 of 19)	intron (NM_001085355, intron 4 of 19)	196896.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-160225643-4	chr2	160225544	160225744	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	101850.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-14100693-2	chr14	14100578	14100778	+	701.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_139227, exon 11 of 12)	exon (NM_139227, exon 11 of 12)	20226.0	NM_025550	66413.0	Mm.27591	NM_025550	ENSMUSG00000021737	Psmd6	2400006A19Rik	proteasome (prosome, macropain) 26S subunit, non-ATPase, 6	protein-coding	0.793489057358665	0.835904339901043	0.245108089934319	0.237383985849648	1.48474105311763	0.257173547792318	0.24729766612803	0.238740769423789	0.677119797376549	0.730320158513882	1
Merged-chr2-6726320-4	chr2	6726216	6726416	+	738.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110232, intron 3 of 15)	intron (NM_001110232, intron 3 of 15)	-4654.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-83896376-2	chr3	83896276	83896476	+	582.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54768.0	NM_011905	24088.0	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-95299837-2	chr10	95299737	95299937	+	719.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001330138, intron 2 of 2)	intron (NM_001330138, intron 2 of 2)	23872.0	NM_001330138	12905.0	Mm.473739	NM_009950	ENSMUSG00000045867	Cradd	RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-88384838-3	chr6	88384743	88384943	+	667.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023060, intron 1 of 6)	intron (NM_023060, intron 1 of 6)	61696.0	NM_023060	65967.0	Mm.333237	NM_023060	ENSMUSG00000033216	Eefsec	Selb|mSelB|sec	eukaryotic elongation factor, selenocysteine-tRNA-specific	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-81839956-1	chr7	81839856	81840056	+	591.0	f0_balb.idr	Intergenic	MTD|LTR|ERVL-MaLR	-10525.0	NM_146193	83962.0	Mm.439893	NM_146193	ENSMUSG00000025103	Btbd1	1190005H08Rik	BTB (POZ) domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19803128-3	chr7	19803041	19803241	+	946.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6332.0	NM_023224	80794.0	Mm.81698	NM_023224	ENSMUSG00000040525	Cblc	2310076I21Rik|2310079L19Rik|Cbl3	Casitas B-lineage lymphoma c	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-32421264-3	chr3	32421158	32421358	+	841.2666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14893.0	NM_008839	18706.0	Mm.260521	NM_008839	ENSMUSG00000027665	Pik3ca	6330412C24Rik|caPI3K|p110|p110alpha	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-88064714-4	chr17	88064623	88064823	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001348248, exon 1 of 23)	5' UTR (NM_001348248, exon 1 of 23)	209.0	NM_001348248	225055.0	Mm.386857	NM_001081034	ENSMUSG00000005371	Fbxo11	C80048|Jf	F-box protein 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28342056-2	chr7	28341956	28342156	+	631.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	(GGA)n|Simple_repeat|Simple_repeat	-3337.0	NM_013676	20924.0	Mm.285906	NM_013676	ENSMUSG00000003435	Supt5	AL033283|AL033321|AU019549|Spt5|Supt5h	suppressor of Ty 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107998051-4	chr9	107997955	107998155	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4593.0	NM_013785	27399.0	Mm.276155	NM_013785	ENSMUSG00000032594	Ip6k1	1200016D08Rik|AU022776|Ihpk1|InsP6|InsP6k1|Itpk6	inositol hexaphosphate kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-62252171-4	chr14	62252071	62252271	+	899.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40808.0	NM_173419	239133.0	Mm.127330	NM_173419	ENSMUSG00000048281	Dleu7	BC038059	deleted in lymphocytic leukemia, 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105553048-4	chr8	105552952	105553152	+	885.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013477, intron 1 of 7)	intron (NM_013477, intron 1 of 7)	13012.0	NM_013477	11972.0	Mm.17708	NM_013477	ENSMUSG00000013160	Atp6v0d1	AI267038|Ac39|Atp6d|P39|VATX|Vma6	ATPase, H+ transporting, lysosomal V0 subunit D1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-79172163-4	chr12	79172087	79172287	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016800, intron 1 of 5)	CpG	271.0	NM_016800	53612.0	Mm.265929	NM_016800	ENSMUSG00000021124	Vti1b	AU015348|GES30|MVti1b|SNARE|Vti1-rp1	vesicle transport through interaction with t-SNAREs 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-62505750-2	chr4	62505650	62505850	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_008525)	TTS (NM_008525)	-3550.0	NM_024257	72748.0	Mm.41506	NM_024257	ENSMUSG00000038422	Hdhd3	2810435D12Rik	haloacid dehalogenase-like hydrolase domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-170343884-7	chr2	170343815	170344015	+	961.5476070000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12446.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-11496393-2	chr16	11496293	11496493	+	636.3000490000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_028964, intron 13 of 20)	intron (NM_028964, intron 13 of 20)	90745.0	NM_001290148	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-109982163-2	chr4	109982063	109982263	+	651.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_172296, exon 3 of 3)	exon (NM_172296, exon 3 of 3)	4138.0	NM_172296	242620.0	Mm.32825	NM_172296	ENSMUSG00000047143	Dmrta2	Dmrt5	doublesex and mab-3 related transcription factor like family A2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-12810641-4	chr17	12810511	12810711	+	834.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027784, intron 2 of 2)	intron (NR_027784, intron 2 of 2)	-40905.0	NM_010515	16004.0	Mm.26553	NM_010515	ENSMUSG00000023830	Igf2r	AI661837|CD222|CI-MPR|M6P/IGF2R|Mpr300	insulin-like growth factor 2 receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-115840662-1	chr4	115840562	115840762	+	550.0	f1_balb.idr	intron (NM_001355174, intron 1 of 11)	intron (NM_001355174, intron 1 of 11)	1464.0	NM_001355174	17346.0	Mm.209327	NM_021461	ENSMUSG00000028708	Mknk1	2410048M24Rik|Mnk1	MAP kinase-interacting serine/threonine kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-26587285-2	chr11	26587185	26587385	+	860.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027260, intron 2 of 12)	intron (NM_027260, intron 2 of 12)	6635.0	NM_027260	69922.0	Mm.285351	NM_027260	ENSMUSG00000064090	Vrk2	2810003O05Rik|AI447698	vaccinia related kinase 2	protein-coding	0.87375118090959	0.253854363614586	0.247408957656726	0.242430806792185	0.507434414459044	0.255306296411362	0.825129754807378	0.672875070621146	0.849581422506697	0.661854435107981	1
Merged-chr3-52088579-4	chr3	52088474	52088674	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	16432.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-56502746-2	chr18	56502646	56502846	+	958.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_026240, exon 14 of 14)	3' UTR (NM_026240, exon 14 of 14)	-35393.0	NR_106160	102465790.0		NR_106160	ENSMUSG00000099196	Mir1258	Gm27371|mmu-mir-1258	microRNA 1258	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-8636208-4	chr15	8636132	8636332	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_148938, exon 10 of 10)	exon (NM_148938, exon 10 of 10)	74575.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-144522847-2	chr3	144522747	144522947	+	562.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355234, intron 1 of 6)	intron (NM_001355234, intron 1 of 6)	47369.0	NM_011828	23908.0	Mm.12863	NM_011828	ENSMUSG00000040151	Hs2st1	2OST|AW214369|Hs2st|mKIAA0448	heparan sulfate 2-O-sulfotransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-97995394-2	chr3	97995294	97995494	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	-18144.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-97901180-4	chr3	97901092	97901292	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011342)	promoter-TSS (NM_011342)	-35.0	NM_011342	20333.0	Mm.2551	NM_011342	ENSMUSG00000027879	Sec22b	4930564D15Rik|AA517334|AI480645|C81333|ERS-24|Sec22l1	SEC22 homolog B, vesicle trafficking protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-84589018-2	chr6	84588918	84589118	+	589.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175475, intron 1 of 6)	CpG	4792.0	NM_175475	232174.0	Mm.255246	NM_175475	ENSMUSG00000063415	Cyp26b1	CP26|P450RAI-2	cytochrome P450, family 26, subfamily b, polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-31192021-4	chr16	31191915	31192115	+	974.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030138, intron 1 of 22)	intron (NM_030138, intron 1 of 22)	9223.0	NM_030138	78618.0	Mm.274646	NM_030138	ENSMUSG00000049076	Acap2	4832442G16|9530039J15Rik|CNT-B2|Centb2|mKIAA0041	ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-35264926-2	chr7	35264826	35265026	+	757.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49581.0	NM_001024707	435965.0	Mm.333783	NM_001024707	ENSMUSG00000001802	Lrp3	-	low density lipoprotein receptor-related protein 3	protein-coding	-0.564566011581523	-0.690183329700339	-0.26085771118631	-0.695434647399731	-0.337030026344615	-0.689511690749636	-0.692499768548121	-0.695036811690115	-0.636655203551073	0.818482501787321	1
Merged-chr10-11282483-2	chr10	11282383	11282583	+	715.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001168297, intron 1 of 2)	intron (NM_001168297, intron 1 of 2)	896.0	NM_001168297	71865.0	Mm.276229	NM_027968	ENSMUSG00000047648	Fbxo30	1700026A16Rik|MUSA1	F-box protein 30	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95357221-4	chr3	95357094	95357294	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018877)	promoter-TSS (NM_018877)	8.0	NM_001163641	84505.0	Mm.490259	NM_018877	ENSMUSG00000015697	Setdb1	AU022152|ESET|KMT1E|mKIAA0067	SET domain, bifurcated 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-121124460-4	chr5	121124376	121124576	+	890.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR30D2_MM|LTR|ERV1	66921.0	NM_001109992	19247.0	Mm.8681	NM_011202	ENSMUSG00000043733	Ptpn11	2700084A17Rik|AW536184|PTP1D|PTP2C|SAP-2|SH-PTP2|SH-PTP3|SHP-2|Shp2|Syp	protein tyrosine phosphatase, non-receptor type 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167491760-2	chr2	167491660	167491860	+	738.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030743)	promoter-TSS (NM_030743)	-885.0	NM_030743	81018.0	Mm.22225	NM_030743	ENSMUSG00000006418	Rnf114	1110008J21Rik|AI225886|AW549494|Zfp228|Zfp313|Znf228	ring finger protein 114	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-132032091-1	chr3	132031991	132032191	+	724.0	f1_balb.idr	Intergenic	Intergenic	-53201.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	1.68583346770926	2.121225708933	3.46516634126782	1.07176456731509	1.29090165219293	1.16069093115496	2.34757569486967	3.33574541201336	-0.128045087820178	0.93914597465685	0.998431161219273
Merged-chr9-32509907-3	chr9	32509791	32509991	+	992.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008026, intron 1 of 8)	intron (NM_008026, intron 1 of 8)	31561.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98784826-2	chr11	98784726	98784926	+	988.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-9449.0	NM_145434	217166.0	Mm.390397	NM_145434	ENSMUSG00000020889	Nr1d1	A530070C09Rik|R75201	nuclear receptor subfamily 1, group D, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-134104738-2	chr1	134104638	134104838	+	609.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6504.0	NM_001284525	71884.0	Mm.328268	NM_027979	ENSMUSG00000026450	Chit1	2300002L19Rik	chitinase 1 (chitotriosidase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-84839692-6	chr1	84839638	84839838	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025386)	promoter-TSS (NM_025386)	-103.0	NM_025386	66153.0	Mm.381192	NM_025386	ENSMUSG00000073633	Fbxo36	0610008D19Rik|1110020F21Rik|2410002G19Rik|D1Ertd757e	F-box protein 36	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-107511408-2	chr11	107511308	107511508	+	837.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31880.0	NM_025894	66997.0	Mm.491171	NM_025894	ENSMUSG00000020720	Psmd12	1500002F15Rik|AI480719|P55	proteasome (prosome, macropain) 26S subunit, non-ATPase, 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-88184521-2	chr6	88184421	88184621	+	552.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9370.0	NM_001355253	14461.0	Mm.491156	NM_008090	ENSMUSG00000015053	Gata2	Gata-2	GATA binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-127889619-4	chr2	127889496	127889696	+	841.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028765, intron 8 of 17)	intron (NM_028765, intron 8 of 17)	34968.0	NM_028765	74121.0	Mm.244835	NM_028765	ENSMUSG00000027380	Acoxl	1200014P05Rik|AV025673	acyl-Coenzyme A oxidase-like	protein-coding	-1.17367364971587	-1.14665061133654	-1.15856004380685	-1.16834280623128	-1.17310571790619	-1.14406978763884	-0.42938571406771	-1.16659169643457	2.89727187181404	0.396361616615464	1
Merged-chr17-73095256-4	chr17	73095157	73095357	+	984.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12728.0	NM_001177968	225010.0	Mm.329194	NM_001081071	ENSMUSG00000054469	Lclat1	AI181996|Agpat8|Alcat1|Gm91|Lycat	lysocardiolipin acyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94093599-3	chr10	94093497	94093697	+	958.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053072, intron 5 of 20)	intron (NM_053072, intron 5 of 20)	-54334.0	NM_011629	22025.0	Mm.107483	NM_011629	ENSMUSG00000005897	Nr2c1	4831444H07Rik|80.3|Eenr|TR2|Tr2-11	nuclear receptor subfamily 2, group C, member 1	protein-coding	4.82136064102605	4.49581127404303	3.27955764343611	3.91644122931415	4.16288557901335	2.6828316854611	3.06040830194866	4.26402494735796	-0.723248235638378	0.201543760101638	0.686836404194126
Merged-chr7-81828578-2	chr7	81828478	81828678	+	863.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_146193, intron 1 of 7)	intron (NM_146193, intron 1 of 7)	853.0	NM_146193	83962.0	Mm.439893	NM_146193	ENSMUSG00000025103	Btbd1	1190005H08Rik	BTB (POZ) domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-55487498-10	chr12	55487432	55487632	+	995.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5115.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-7871285-4	chr9	7871167	7871367	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007464, intron 1 of 8)	intron (NM_007464, intron 1 of 8)	1903.0	NM_007464	11796.0	Mm.2026	NM_007464	ENSMUSG00000032000	Birc3	AW107670|Api1|Api2|Birc2|C-IAP2|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF49|cIAP-1|cIAP-2|cIAP1|cIAP2	baculoviral IAP repeat-containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-37426029-4	chr6	37425942	37426142	+	987.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178661, intron 1 of 11)	MT2B2|LTR|ERVL	16106.0	NM_178661	208647.0	Mm.169929	NM_178661	ENSMUSG00000038648	Creb3l2	BBF2H7|C530025K05Rik|SCIRR69	cAMP responsive element binding protein 3-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-57354812-4	chr18	57354760	57354960	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_028447, exon 1 of 9)	5' UTR (NM_028447, exon 1 of 9)	127.0	NM_028447	73137.0	Mm.29889	NM_028447	ENSMUSG00000024594	Prrc1	1190002C06Rik|2310058D16Rik|3110038B19Rik|9430085A19Rik	proline-rich coiled-coil 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-38038313-3	chr5	38038140	38038340	+	932.244446	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289535)	promoter-TSS (NM_001289535)	-990.0	NM_001289536	71116.0	Mm.18959	NM_026959	ENSMUSG00000029125	Stx18	1810035L21Rik|4933425D03Rik|AU041562	syntaxin 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-46231320-1	chr6	46231220	46231420	+	651.0	f0_balb.idr	intron (NM_001004357, intron 9 of 23)	MLT1F-int|LTR|ERVL-MaLR	-1013076.0	NM_025771	66797.0	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	-1.2087802031865	-1.18255559123277	-1.1934648774972	-1.20242609004962	-1.0572203610596	-0.684244446803552	-1.19099525421168	-1.20082203728721	2.61682731156801	0.42085555974408	1
Merged-chr2-124931555-2	chr2	124931455	124931655	+	575.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-136572.0	NM_175034	317750.0	Mm.330538	NM_175034	ENSMUSG00000035183	Slc24a5	F630045L20Rik|JSX|NCKX5|NCX5|Oca6	solute carrier family 24, member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-132317396-4	chr7	132317292	132317492	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360768)	promoter-TSS (NM_001360768)	-164.0	NM_029935	77590.0	Mm.213582	NM_029935	ENSMUSG00000030930	Chst15	4631426J05Rik|BRAG|GalNAc4S-6ST|GalNAcS-6ST|MAd5|mKIAA0598	carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167654668-2	chr2	167654568	167654768	+	732.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_145538, exon 2 of 6)	exon (NM_145538, exon 2 of 6)	6876.0	NM_145538	407243.0	Mm.4863	NM_145538	ENSMUSG00000090213	Tmem189	AI840826|Kua	transmembrane protein 189	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-102141622-2	chr15	102141522	102141722	+	683.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2564.0	NM_008344	16012.0	Mm.358609	NM_008344	ENSMUSG00000023046	Igfbp6	IGFBP-6	insulin-like growth factor binding protein 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180429088-3	chr1	180428996	180429196	+	931.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54408.0	NM_001081227	381310.0	Mm.44791	NM_001081227	ENSMUSG00000053963	Stum	6330403A02Rik|Gm10001|R75555	mechanosensory transduction mediator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-16182376-2	chr2	16182276	16182476	+	735.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310455, intron 35 of 38)	intron (NM_001310455, intron 35 of 38)	-173928.0	NM_026162	67448.0	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166112510-2	chr2	166112410	166112610	+	610.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252579, intron 3 of 20)	L2a|LINE|L2	42775.0	NM_001355619	72043.0	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-132364338-2	chr1	132364238	132364438	+	621.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178874, intron 2 of 4)	L1MB3|LINE|L1	3610.0	NM_001311108	68875.0	Mm.273785	NM_178874	ENSMUSG00000042066	Tmcc2	1110063G11Rik	transmembrane and coiled-coil domains 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-3664623-4	chr8	3664523	3664723	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1139.0	NM_026985	69189.0	Mm.175176	NM_026985	ENSMUSG00000013974	Mcemp1	1810033B17Rik	mast cell expressed membrane protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-140065909-2	chr2	140065809	140066009	+	881.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289611, intron 1 of 6)	B3|SINE|B2	896.0	NM_001159640	75812.0	Mm.293449	NM_175225	ENSMUSG00000039033	Tasp1	4930485D02Rik|AW986064	taspase, threonine aspartase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-123998951-2	chr10	123998851	123999051	+	617.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-470123.0	NR_028310	75030.0	Mm.159403	NR_028310	ENSMUSG00000112364	4930503E24Rik	-	eukaryotic translation initiation factor 3, subunit I pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191283747-1	chr1	191283647	191283847	+	540.0	f1_c57bl6.idr	Intergenic	Intergenic	34371.0	NM_025424	66208.0	Mm.46444	NM_025424	ENSMUSG00000037499	Nenf	1110060M21Rik|SCIRP10|Spuf	neuron derived neurotrophic factor	protein-coding	-1.50811478453619	-0.99851579554048	-1.48484165847197	-1.49312904261012	-1.50577282675516	-1.47256636097272	-1.48255773576353	-1.49164560481169	-2.24133836997777	0.518237887813808	1
Merged-chr13-45009578-1	chr13	45009478	45009678	+	617.0	f1_balb.idr	Intergenic	Intergenic	-7482.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	2.28119565468037	2.29779297148063	1.31345043688329	3.73807194541814	3.11625205976181	2.13716622041587	1.32409245883094	2.92885383709999	-0.310716651887656	0.752475104976334	0.998431161219273
Merged-chr18-35467851-4	chr18	35467813	35468013	+	862.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001360814, exon 1 of 10)	5' UTR (NM_001360814, exon 1 of 10)	2039.0	NM_001360814	81500.0	Mm.291482	NM_030749	ENSMUSG00000024357	Sil1	1810057E01Rik|AI042831|wz	endoplasmic reticulum chaperone SIL1 homolog (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134538940-3	chr6	134538836	134539036	+	870.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008514, intron 2 of 22)	intron (NM_008514, intron 2 of 22)	27977.0	NM_008514	16974.0	Mm.321990	NM_008514	ENSMUSG00000030201	Lrp6	C030016K15Rik|Cd|Gw|ska26|ska<m26Jus>|skax26	low density lipoprotein receptor-related protein 6	protein-coding	1.75616330538897	1.96156777528621	1.89706465587968	1.84559305405471	1.76982085231574	2.10248063617972	1.20768333361209	2.16954186902213	0.023306303750288	0.981824883625227	0.998431161219273
Merged-chr11-69935667-6	chr11	69935627	69935827	+	944.922241	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347634)	promoter-TSS (NM_001347634)	-172.0	NM_016875	53422.0	Mm.29286	NM_016875	ENSMUSG00000018554	Ybx2	Msy2	Y box protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107872843-4	chr9	107872750	107872950	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011251)	promoter-TSS (NM_011251)	-31.0	NM_029169	19654.0	Mm.139926	NM_011251	ENSMUSG00000032582	Rbm6	4930506F14Rik|Def-3|NY-LU-12|g16|mKIAA4015	RNA binding motif protein 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32602897-4	chr2	32602800	32603000	+	996.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025311, intron 1 of 4)	intron (NM_001025311, intron 1 of 4)	3191.0	NM_001025311	50935.0	Mm.88831	NM_016973	ENSMUSG00000026811	St6galnac6	ST6GalNAcVI|Siat7f	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-55303315-4	chr12	55303203	55303403	+	980.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021529)	promoter-TSS (NM_021529)	-303.0	NM_021529	59032.0	Mm.427307	NM_021529	ENSMUSG00000021022	Ppp2r3c	4930511A21Rik|5730412A08Rik|G4-1|G5pr	protein phosphatase 2, regulatory subunit B'', gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135129028-4	chr4	135128941	135129141	+	909.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019732, intron 1 of 5)	intron (NM_019732, intron 1 of 5)	8396.0	NM_019732	12399.0	Mm.378894	NM_019732	ENSMUSG00000070691	Runx3	AML2|Cbfa3|Pebp2a3	runt related transcription factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3377389-2	chr12	3377289	3377489	+	598.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008445, intron 1 of 7)	B3|SINE|B2	12257.0	NM_008445	16570.0	Mm.7688	NM_008445	ENSMUSG00000020668	Kif3c	mKIAA4058	kinesin family member 3C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-91523967-3	chr1	91523870	91524070	+	827.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028718, intron 13 of 14)	intron (NM_028718, intron 13 of 14)	-16595.0	NM_001039126	65247.0	Mm.234152	NM_023046	ENSMUSG00000026311	Asb1	1700029O08Rik|1700054C17Rik|AI426616|AI851378|mKIAA1146	ankyrin repeat and SOCS box-containing 1	protein-coding	2.89791195082278	1.54319406999091	1.8735654365939	2.09095015595902	1.7444122987699	2.47987285756261	1.50829397028218	2.1019663615938	-0.51124280860698	0.598815519565926	0.972303230574462
Merged-chr17-21534115-2	chr17	21534015	21534215	+	858.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_131123, intron 2 of 2)	intron (NR_131123, intron 2 of 2)	-1424.0	NM_144515	22710.0	Mm.296100	NM_144515	ENSMUSG00000051341	Zfp52	KRAB11|Zfp-52|Zfp76|mszf23-2|mszf24|mszf34|mszf75|zfec29	zinc finger protein 52	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-113670565-2	chr6	113670465	113670665	+	564.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 3 of 11)	intron (NM_001113553, intron 3 of 11)	-26485.0	NM_001347356	381801.0	Mm.333322	NM_001033463	ENSMUSG00000056952	Tatdn2	AI646012|mKIAA0218	TatD DNase domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-71188795-3	chr9	71188688	71188888	+	923.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110517, intron 5 of 5)	MLT1D|LTR|ERVL-MaLR	20012.0	NR_110517	102635087.0	Mm.444536	NR_110517	ENSMUSG00000111429	Gm32511	-	predicted gene, 32511	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-32166498-2	chr14	32166398	32166598	+	857.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019744, intron 1 of 9)	intron (NM_019744, intron 1 of 9)	709.0	NM_019744	27057.0	Mm.371598	NM_019744	ENSMUSG00000056234	Ncoa4	ARA70|Rfg	nuclear receptor coactivator 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97298259-1	chr6	97298159	97298359	+	564.0	f1_c57bl6.idr	intron (NM_145148, intron 20 of 23)	intron (NM_145148, intron 20 of 23)	-45479.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	2.09406092416797	2.47218859280645	0.821751488965028	1.55299772278005	0.777554507870894	1.34644801488754	0.826762988989657	1.24976827776106	-2.6628190670765	0.0476188618235452	0.316372639286098
Merged-chr8-104340714-4	chr8	104340614	104340814	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_024217, exon 1 of 5)	5' UTR (NM_024217, exon 1 of 5)	120.0	NM_024217	68119.0	Mm.390108	NM_024217	ENSMUSG00000031875	Cmtm3	9430096L06Rik|AI413895|BNAS2|Cklfsf3	CKLF-like MARVEL transmembrane domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-143139666-4	chr6	143139546	143139746	+	930.93335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153819, intron 5 of 8)	intron (NR_153819, intron 5 of 8)	14285.0	NR_153819	102633311.0	Mm.333484	NR_153819		Gm31108	Gm31169	predicted gene, 31108	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-30617347-2	chr6	30617247	30617447	+	688.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_144537, intron 4 of 11)	intron (NM_144537, intron 4 of 11)	6337.0	NM_144537	74649.0	Mm.159276	NM_144537	ENSMUSG00000029788	Cpa5	4930430M09Rik	carboxypeptidase A5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25713690-2	chr7	25713590	25713790	+	769.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028771, intron 4 of 4)	intron (NM_028771, intron 4 of 4)	5363.0	NM_028771	52132.0	Mm.278798	NM_028771	ENSMUSG00000002608	Ccdc97	1200014H14Rik|2810446P04Rik|AA545218|D7Ertd462e	coiled-coil domain containing 97	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-63942299-3	chr5	63942197	63942397	+	802.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145923, intron 1 of 6)	intron (NM_145923, intron 1 of 6)	26600.0	NM_145923	100532.0	Mm.243632	NM_145923	ENSMUSG00000047881	Rell1	AA536743	RELT-like 1	protein-coding	0.383931198183491	0.0417865075945902	0.0367695291050697	0.0329083800427143	0.650870789944089	0.0429193817883233	0.209925919516177	0.444554633417649	1.83063488156458	0.389415620390154	1
Merged-chr17-29432120-4	chr17	29432034	29432234	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-58911.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	5.79270801313235	6.2464434821811	6.08206618179224	5.02835573884592	5.70403444846828	5.39129493615273	5.15907368213365	5.37499070707847	-0.481426444789119	0.109836801052095	0.519238250059898
Merged-chr2-77289388-2	chr2	77289288	77289488	+	660.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8796.0	NM_175465	228071.0	Mm.27120	NM_175465	ENSMUSG00000042272	Sestd1	1500031J16Rik|A930010O20|Solo/Trio8	SEC14 and spectrin domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28741058-2	chr7	28740958	28741158	+	625.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023637)	promoter-TSS (NM_023637)	-237.0	NM_001360254	24030.0	Mm.358650	NM_011885	ENSMUSG00000045948	Mrps12	AI327385|Rpms12|rps12	mitochondrial ribosomal protein S12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-153746937-2	chr1	153746837	153747037	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2489.0	NM_011882	24014.0	Mm.259254	NM_011882	ENSMUSG00000066800	Rnasel	E230029I04Rik	ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-68095170-2	chr4	68095070	68095270	+	711.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3C|LINE|L1	226791.0	NR_151548	102633975.0		NR_151548		Gm12911	-	predicted gene 12911	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-85272146-1	chr9	85272046	85272246	+	797.0	f0_balb.idr	Intergenic	ORR1A2-int|LTR|ERVL-MaLR	54978.0	NM_001160378	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	-0.411525459633637	-0.399763329147179	-0.403627563384813	0.206753586487125	-0.268738846529344	-0.398890836114437	-0.402776175457142	0.0132941777730022	-0.342683922446234	0.893009680520655	1
Merged-chr11-117483122-4	chr11	117483030	117483230	+	986.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1238.0	NR_130966	432615.0	Mm.126359	NR_130966	ENSMUSG00000069588	Gm11733	-	predicted gene 11733	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-91021492-2	chr1	91021392	91021592	+	698.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111312, intron 1 of 12)	B3|SINE|B2	22765.0	NM_001111312	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3607415-4	chr4	3607309	3607509	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054089, intron 12 of 12)	intron (NM_054089, intron 12 of 12)	32530.0	NM_054089	116940.0	Mm.171323	NM_054089	ENSMUSG00000028233	Tgs1	D4Ertd800e|Ncoa6ip|Pimt	trimethylguanosine synthase 1	protein-coding	2.09835977034237	2.10421665445394	2.6614710209851	1.21562557396008	2.11651470988208	2.26039400299617	2.68302532262283	1.22008038045809	0.122183966855178	0.90707266654938	0.998431161219273
Merged-chr9-22484959-6	chr9	22484838	22485038	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178415, intron 2 of 22)	PB1D10|SINE|Alu	9223.0	NM_181316	319845.0	Mm.176725	NM_178415	ENSMUSG00000035919	Bbs9	E130103I17Rik	Bardet-Biedl syndrome 9 (human)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102720191-2	chr12	102720091	102720291	+	754.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15322.0	NM_172584	217837.0	Mm.482192	NM_172584	ENSMUSG00000057963	Itpk1	BC031182	inositol 1,3,4-triphosphate 5/6 kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19306830-10	chr7	19306703	19306903	+	921.383301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347586, intron 2 of 4)	intron (NM_001347586, intron 2 of 4)	3242.0	NM_008036	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-139223623-2	chr4	139223523	139223723	+	778.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	29512.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	0.360017711568644	1.1529939567106	0.377612682868182	0.944115125298295	0.658140085559531	0.387978799222976	0.379485759653046	1.05450216000651	-0.554790694016687	0.761501480268488	1
Merged-chr11-68976694-2	chr11	68976594	68976794	+	581.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Charlie4a|DNA|hAT-Charlie	-1509.0	NM_001285441	57785.0	Mm.143774	NM_021329	ENSMUSG00000032892	Rangrf	2400006H24Rik|Mog1|Rangnrf	RAN guanine nucleotide release factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-21325687-1	chr12	21325587	21325787	+	618.0	f1_balb.idr	intron (NM_001291871, intron 18 of 18)	intron (NM_001291871, intron 18 of 18)	9295.0	NM_026347	67732.0	Mm.335830	NM_026347	ENSMUSG00000062054	Iah1	1500019E20Rik|4833421E05Rik	isoamyl acetate-hydrolyzing esterase 1 homolog	protein-coding	0.828171320918659	0.714058590153538	1.54860672773817	0.698929480322525	0.833011662568717	1.22406567580897	1.56161315683878	0.86400000769397	0.672044863193083	0.652904932955547	0.986583880083516
Merged-chr2-27657034-3	chr2	27656933	27657133	+	623.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20168.0	NM_011305	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-25334066-2	chr17	25333962	25334162	+	851.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11500.0	NM_031187	100503895.0	Mm.3301	NM_031187	ENSMUSG00000024173	Tpsab1	MMCP-7|Mcp-7|Mcp7|Mcpt7	tryptase alpha/beta 1	protein-coding	0.0187019684537861	-0.103332901975345	-0.107869199822872	0.575443230235982	0.142618049345732	-0.10230831151329	0.0653220317351233	0.0478167746261261	-0.80353099216561	0.698873539488139	1
Merged-chr3-94954020-4	chr3	94953925	94954125	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017395)	promoter-TSS (NM_017395)	-83.0	NM_017395	53970.0	Mm.24308	NM_017395	ENSMUSG00000005774	Rfx5	-	regulatory factor X, 5 (influences HLA class II expression)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-9832924-3	chr3	9832814	9833014	+	930.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195031, intron 1 of 8)	intron (NM_001195031, intron 1 of 8)	765.0	NM_053182	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-179648693-1	chr2	179648593	179648793	+	549.0	f0_balb.idr	intron (NM_001316723, intron 2 of 5)	intron (NM_001316723, intron 2 of 5)	206262.0	NM_009867	12561.0	Mm.184711	NM_009867	ENSMUSG00000000305	Cdh4	AW120700|R-CAD|R-Cadh|Rcad	cadherin 4	protein-coding	1.39690732486442	2.25865475792878	1.06619293900523	2.10882030909823	1.40809548523417	2.2769079177405	1.07173839588718	2.21309687570069	0.117388869045587	0.91996143904344	0.998431161219273
Merged-chr9-21714210-2	chr9	21714110	21714310	+	669.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-9366.0	NM_001252658	16835.0	Mm.3213	NM_010700	ENSMUSG00000032193	Ldlr	Hlb301	low density lipoprotein receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97128196-2	chr11	97128096	97128296	+	715.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12865.0	NM_019507	57765.0	Mm.94519	NM_019507	ENSMUSG00000001444	Tbx21	TBT1|Tbet|Tblym	T-box 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-26104884-3	chr6	26104780	26104980	+	660.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	173454.0	NR_040771	626904.0	Mm.126787	NR_040771	ENSMUSG00000106799	Gm20756	-	predicted gene, 20756	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-144768649-4	chr5	144768496	144768696	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081362)	promoter-TSS (NM_001081362)	-196.0	NM_001081362	100683.0	Mm.273570	NM_001081362	ENSMUSG00000045482	Trrap	AI481500	transformation/transcription domain-associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-120655391-1	chr2	120655291	120655491	+	541.0	f1_c57bl6.idr	Intergenic	Intergenic	45796.0	NM_001290807	66296.0	Mm.221900	NM_025475	ENSMUSG00000027285	Haus2	1700101G24Rik|2410007P03Rik|AU020217|Cep27	HAUS augmin-like complex, subunit 2	protein-coding	-1.14149542847138	-0.33100028091332	-1.12720875772362	-1.13728867753953	-1.14086750656251	-1.11193125150289	-1.12436624874263	-1.1356767669541	-2.98824766641611	0.369648585513947	1
Merged-chr16-22517771-4	chr16	22517646	22517846	+	953.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_130988)	TTS (NR_130988)	6266.0	NR_130988	78082.0	Mm.243927	NR_130988	ENSMUSG00000089874	9230117E06Rik	-	RIKEN cDNA 9230117E06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122408445-2	chr8	122408345	122408545	+	597.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001029993, intron 11 of 18)	intron (NM_001029993, intron 11 of 18)	-13575.0	NM_145834	234836.0	Mm.222808	NM_145834	ENSMUSG00000046108	Il17c	IL-17C	interleukin 17C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-76786607-4	chr16	76786518	76786718	+	964.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7526.0	NR_155453	102632814.0		NR_155453	ENSMUSG00000109333	Gm30790	Gm45028	predicted gene, 30790	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84990533-4	chr8	84990453	84990653	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001167991)	promoter-TSS (NM_001167991)	-42.0	NM_133255	170833.0	Mm.247775	NM_133255	ENSMUSG00000052566	Hook2	A630054I03Rik	hook microtubule tethering protein 2	protein-coding	6.3850672361941	6.11425774213416	5.85576831780323	6.61347434768769	6.56106042718433	6.25649296770035	5.69280548357274	6.68646521436839	0.0852135543968826	0.738062140018572	0.998431161219273
Merged-chr4-149303073-2	chr4	149302973	149303173	+	718.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008441, intron 1 of 20)	intron (NM_008441, intron 1 of 20)	4625.0	NM_207682	16561.0	Mm.402393	NM_008441	ENSMUSG00000063077	Kif1b	A530096N05Rik|AI448212|AI506502|D4Mil1e|KIF1Bp130|KIF1Bp204	kinesin family member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-19632073-2	chr2	19631973	19632173	+	804.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	25824.0	NR_033642	100041244.0	Mm.407223	NR_033642		Gm3230	-	predicted gene 3230	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-43990521-1	chr5	43990421	43990621	+	581.666687	f1_c57bl6.idr	Intergenic	Intergenic	-8722.0	NM_001271616	14181.0	Mm.46053	NM_008009	ENSMUSG00000048373	Fgfbp1	FGF-BP|FGF-BP1|FGFBP-1	fibroblast growth factor binding protein 1	protein-coding	2.59083827832814	2.37234604900116	3.46181179820048	1.72608415098655	2.52948496645439	2.75650808018624	1.27847489711498	1.24138390855516	-1.10879086642855	0.26631486850008	0.769151254995423
Merged-chr2-167680891-4	chr2	167680822	167681022	+	795.200012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-7993.0	NM_009883	12608.0	Mm.439656	NM_009883	ENSMUSG00000056501	Cebpb	C/EBPbeta|CRP2|IL-6DBP|LAP|LIP|NF-IL6|NF-M|Nfil6	CCAAT/enhancer binding protein (C/EBP), beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-86047799-7	chr12	86047707	86047907	+	942.4285890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081423, intron 33 of 33)	intron (NM_001081423, intron 33 of 33)	31234.0	NM_009368	21809.0	Mm.3992	NM_009368	ENSMUSG00000021253	Tgfb3	TGF-beta-3|Tgfb-3	transforming growth factor, beta 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-28422769-2	chr6	28422669	28422869	+	808.166687	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007480)	promoter-TSS (NM_007480)	-835.0	NM_007480	11844.0	Mm.389075	NM_007480	ENSMUSG00000020440	Arf5	-	ADP-ribosylation factor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-111105396-2	chr10	111105296	111105496	+	700.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59406.0	NM_001003717	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-27616612-3	chr3	27616485	27616685	+	935.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356953, intron 4 of 26)	intron (NM_001356953, intron 4 of 26)	-31590.0	NR_037275	100526525.0		NR_037275	ENSMUSG00000092695	Mir3092	mir-3092|mmu-mir-3092	microRNA 3092	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-36968402-2	chr9	36968302	36968502	+	851.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_148950, exon 3 of 12)	exon (NM_148950, exon 3 of 12)	134828.0	NM_001357611	235180.0	Mm.5264	NM_183171	ENSMUSG00000032118	Fez1	UNC-76|UNC76	fasciculation and elongation protein zeta 1 (zygin I)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-115481839-2	chr6	115481739	115481939	+	609.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001308354, intron 7 of 7)	intron (NM_001308354, intron 7 of 7)	59773.0	NM_011146	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-94295751-1	chr6	94295651	94295851	+	826.0	f1_c57bl6.idr	Intergenic	Intergenic	-11834.0	NM_001286785	14924.0	Mm.217216	NM_010367	ENSMUSG00000045095	Magi1	AIP3|BAP1|Baiap1|Gukmi1|MAGI1c|Magi-1|TNRC19|WWP3|mKIAA4129	membrane associated guanylate kinase, WW and PDZ domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-35893333-3	chr5	35893239	35893439	+	931.855591	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027373)	promoter-TSS (NM_027373)	20.0	NM_027373	70292.0	Mm.125167	NM_027373	ENSMUSG00000029094	Afap1	2600003E23Rik|9630044L16Rik|AI848729|Afap|mKIAA3018	actin filament associated protein 1	protein-coding	3.12418091693718	2.25902679017227	1.99330965814886	3.45682104594345	3.08848743492288	1.84358984620004	2.75034390732916	2.55205382874289	-0.406461715394978	0.612482921557535	0.976337921990342
Merged-chr19-5824699-2	chr19	5824599	5824799	+	589.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_131212)	TTS (NR_131212)	20779.0	NR_131212	66961.0	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-81378599-2	chr17	81378499	81378699	+	697.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_104580, exon 9 of 9)	non-coding (NR_104580, exon 9 of 9)	-313514.0	NM_028138	72167.0	Mm.273257	NM_028138	ENSMUSG00000024246	Thumpd2	2810025A12Rik	THUMP domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-50593719-3	chr9	50593604	50593804	+	816.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	10145.0	NM_025848	66925.0	Mm.10406	NM_025848	ENSMUSG00000000171	Sdhd	3110001M13Rik|AVLL5809|C78570|PRO19626	succinate dehydrogenase complex, subunit D, integral membrane protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-59201613-2	chr2	59201513	59201713	+	712.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 1 of 20)	intron (NM_175464, intron 1 of 20)	40763.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-144240562-2	chr2	144240462	144240662	+	611.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25640.0	NR_030762	100313519.0	Mm.453538	NR_030762	ENSMUSG00000077714	Snord17	MBI-43	small nucleolar RNA, C/D box 17	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83583102-4	chr6	83582995	83583195	+	847.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_078345, intron 6 of 7)	Lx8|LINE|L1	-10591.0	NM_001362080	70527.0	Mm.32801	NM_024239	ENSMUSG00000006906	Stambp	5330424L14Rik|5730422L11Rik|AW107289|Amsh|mKIAA4198	STAM binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-123024455-3	chr8	123024340	123024540	+	938.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 1 of 12)	intron (NM_001081379, intron 1 of 12)	17844.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-45659083-4	chr14	45658973	45659173	+	871.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039106)	promoter-TSS (NM_001039106)	-930.0	NM_001042719	114874.0	Mm.121918	NM_176845	ENSMUSG00000037697	Ddhd1	Mir5131|PA-PLA1	DDHD domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-129501244-4	chr5	129501059	129501259	+	860.78125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172276)	promoter-TSS (NM_172276)	-72.0	NM_001359952	231769.0	Mm.288714	NM_172276	ENSMUSG00000029439	Sfswap	1190005N23Rik|6330437E22Rik|AI197402|AW212079|SWAP|Sfrs8|Srsf8	splicing factor SWAP	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55590194-4	chr14	55590099	55590299	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029855, intron 2 of 10)	MIR3|SINE|MIR	822.0	NM_011190	19188.0	Mm.371573	NM_011190	ENSMUSG00000079197	Psme2	AA589371|AI788882|PA28b	proteasome (prosome, macropain) activator subunit 2 (PA28 beta)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-97770065-4	chr1	97769970	97770170	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173760)	promoter-TSS (NM_173760)	22.0	NM_173760	227399.0	Mm.220817	NM_173760	ENSMUSG00000040648	Ppip5k2	AW555814|Cfap160|D330021B20|Hisppd1|Vip2|mKIAA0433	diphosphoinositol pentakisphosphate kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-64655362-4	chr11	64655274	64655474	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-218700.0	NR_028445	654805.0	Mm.436132	NR_028445		F930015N05Rik	-	RIKEN cDNA F930015N05 gene	ncRNA	7.07663637579127	6.43633754506211	7.54226416103154	6.64031956610237	6.7612574129112	5.9603641956578	6.83309820784961	5.85331822585624	-0.601925099935662	0.0261279772280878	0.21609614254315
Merged-chr5-43102792-4	chr5	43102694	43102894	+	970.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-130669.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	4.36901911008566	4.34369233802218	4.14454934890458	4.40672191342155	4.18428050270793	4.37363674849185	4.17548413262945	4.27990161634777	-0.0893727765190682	0.819267884780768	0.998431161219273
Merged-chr6-24712655-1	chr6	24712555	24712755	+	665.0	f0_balb.idr	Intergenic	Intergenic	-20590.0	NM_028920	74409.0	Mm.87331	NM_028920	ENSMUSG00000029679	Hyal6	4932701A20Rik|Hyal-ps1|Hyalp1	hyaluronoglucosaminidase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-84211647-3	chr7	84211575	84211775	+	958.7222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59782.0	NM_133722	70178.0	Mm.23914	NM_133722	ENSMUSG00000038459	Abhd17c	2210412D01Rik|AL023007|Fam108c|Fam108c1	abhydrolase domain containing 17C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-121637008-3	chr3	121636918	121637118	+	582.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_036457)	TTS (NR_036457)	6467.0	NR_036456	100503044.0	Mm.65320	NM_176992	ENSMUSG00000044522	A730020M07Rik	-	RIKEN cDNA A730020M07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-69371409-4	chr12	69371268	69371468	+	988.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007481)	promoter-TSS (NM_007481)	-782.0	NM_007481	11845.0	Mm.27308	NM_007481	ENSMUSG00000044147	Arf6	AI788669|AW496366	ADP-ribosylation factor 6	protein-coding	3.2870558543015	3.52486222922688	1.95166312450839	3.31598839202062	3.31370057601746	3.46817002420326	2.56459472271815	3.47585773660022	0.178160048643769	0.789187382032891	0.998431161219273
Merged-chr1-135510449-3	chr1	135510344	135510544	+	856.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173437, intron 3 of 28)	intron (NM_173437, intron 3 of 28)	-55761.0	NR_049188	100885827.0		NR_049188	ENSMUSG00000093515	Mir1231	Gm23720|mir-1231|mmu-mir-1231	microRNA 1231	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-106974479-4	chr2	106974370	106974570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001025102)	promoter-TSS (NM_001025102)	-73.0	NM_001025102	212772.0	Mm.381231	NM_173750	ENSMUSG00000027122	Arl14ep	2700007P21Rik|4930448O08Rik|ARF7EP	ADP-ribosylation factor-like 14 effector protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-37173513-2	chr19	37173413	37173613	+	894.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045329)	promoter-TSS (NR_045329)	-330.0	NR_045329	319931.0	Mm.446730	NR_045329	ENSMUSG00000097591	A330032B11Rik	-	RIKEN cDNA A330032B11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-83808234-4	chr17	83808140	83808340	+	850.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054082, intron 16 of 16)	intron (NM_054082, intron 16 of 16)	38550.0	NM_025325	107766.0	Mm.30100	NM_025325	ENSMUSG00000000673	Haao	0610007K21Rik|0610012J07Rik|3-HAO|3-HAOxase|3HAO	3-hydroxyanthranilate 3,4-dioxygenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-47400072-2	chr4	47399972	47400172	+	779.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001312869, intron 3 of 7)	intron (NM_001312869, intron 3 of 7)	13856.0	NM_001312869	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-13889730-3	chr8	13889674	13889874	+	979.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359059, intron 1 of 2)	intron (NM_001359059, intron 1 of 2)	497.0	NM_001359059	66423.0	Mm.29063	NM_025556	ENSMUSG00000031458	Coprs	1700029I03Rik|2410022L05Rik|AA409325|AI256813|C85432|Copr5	coordinator of PRMT5, differentiation stimulator	protein-coding	1.83513588121009	2.43186515024624	2.24007042847579	2.17982436549875	1.84854335349451	2.44937419088679	2.25690540779684	2.1905099457021	0.0374462035632521	0.965376920189767	0.998431161219273
Merged-chr3-138958748-4	chr3	138958659	138958859	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356388, intron 7 of 13)	intron (NM_001356388, intron 7 of 13)	116442.0	NM_145544	229877.0	Mm.28893	NM_145544	ENSMUSG00000028149	Rap1gds1	BC011279|GDS1	RAP1, GTP-GDP dissociation stimulator 1	protein-coding	3.75404550656414	3.38413158866085	4.24240279535482	2.70700193854628	3.83332584585012	3.68206890860358	3.19076760942371	2.5719161050196	-0.348251016333547	0.56756270292467	0.962562732139494
Merged-chr7-44869288-4	chr7	44869150	44869350	+	998.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133949, intron 1 of 11)	CpG	538.0	NM_133949	84113.0	Mm.42855	NM_133949	ENSMUSG00000038502	Ptov1	1110030G05Rik|AU041779|Gcap3	prostate tumor over expressed gene 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-95849798-4	chr4	95849711	95849911	+	957.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113412, intron 14 of 15)	intron (NM_001113412, intron 14 of 15)	117224.0	NR_045777	319247.0	Mm.473527	NM_175680	ENSMUSG00000044125	9530080O11Rik	-	RIKEN cDNA 9530080O11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-53730231-3	chr15	53730130	53730330	+	659.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177225, intron 2 of 4)	intron (NM_177225, intron 2 of 4)	-115951.0	NR_039538	100628567.0		NR_039538	ENSMUSG00000104794	Mir28c	mmu-mir-28c	microRNA 28c	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140721878-2	chr5	140721778	140721978	+	569.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2249.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-27319999-2	chr3	27319899	27320099	+	619.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009425, intron 1 of 4)	intron (NM_009425, intron 1 of 4)	2922.0	NM_009425	22035.0	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-128461355-3	chr7	128461261	128461461	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_009383, exon 1 of 12)	5' UTR (NM_009383, exon 1 of 12)	152.0	NM_009383	21843.0	Mm.242072	NM_009383	ENSMUSG00000030846	Tial1	5330433G13Rik|AL033329|TIAR|mTIAR	Tia1 cytotoxic granule-associated RNA binding protein-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-57686336-4	chr11	57686225	57686425	+	924.783325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134189, intron 1 of 11)	intron (NM_134189, intron 1 of 11)	-36831.0	NR_153850	78762.0	Mm.362149	NR_153850		4933424L21Rik	-	RIKEN cDNA 4933424L21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-40479638-1	chr1	40479538	40479738	+	558.0	f0_balb.idr	intron (NM_001161842, intron 5 of 9)	intron (NM_001161842, intron 5 of 9)	13632.0	NM_008365	16182.0	Mm.253664	NM_008365	ENSMUSG00000026070	Il18r1	Il18ralpha|Il1rrp	interleukin 18 receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127574227-2	chr10	127574127	127574327	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 27 of 88)	intron (NM_008512, intron 27 of 88)	-39668.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-108404593-3	chr9	108404487	108404687	+	752.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001135198, exon 7 of 7)	3' UTR (NM_001135198, exon 7 of 7)	11753.0	NM_053216	112418.0	Mm.78287	NM_053216	ENSMUSG00000032611	1700102P08Rik	AI593206	RIKEN cDNA 1700102P08 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124835386-1	chr6	124835286	124835486	+	554.0	f0_balb.idr	intron (NM_013530, intron 9 of 9)	intron (NM_013530, intron 9 of 9)	4889.0	NM_013530	14695.0	Mm.68889	NM_013530	ENSMUSG00000023439	Gnb3	Gnb-3	guanine nucleotide binding protein (G protein), beta 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-4580710-3	chr15	4580603	4580803	+	769.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-146507.0	NM_016704	12274.0	Mm.20247	NM_016704	ENSMUSG00000022181	C6	AW111623	complement component 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-82321298-3	chr4	82321204	82321404	+	595.822266	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286127, intron 9 of 10)	intron (NM_001286127, intron 9 of 10)	184475.0	NM_001286127	18028.0	Mm.317947	NM_008687	ENSMUSG00000008575	Nfib	6720429L07Rik|CTF|E030026I10Rik|NF-I/B|NF1-B|NFI-B	nuclear factor I/B	protein-coding	1.01183864834085	1.8574645912228	0.546264890233986	0.534639794911236	1.02318543440299	1.58929847584451	0.549543575635984	0.536688604898968	-0.421133762641296	0.796013512456101	0.998431161219273
Merged-chr17-5625672-7	chr17	5625494	5625694	+	828.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	RMER15|LTR|ERVL	132994.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16628291-4	chr7	16628204	16628404	+	925.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_136929, intron 2 of 2)	intron (NR_136929, intron 2 of 2)	-13311.0	NM_172739	232906.0	Mm.28646	NM_172739	ENSMUSG00000058230	Arhgap35	6430596G11Rik|AI841135|Grlf1|mKIAA1722|p190A|p190RhoGAP	Rho GTPase activating protein 35	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-104751642-4	chr12	104751518	104751718	+	985.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_148948, intron 1 of 26)	CpG	334.0	NM_148948	192119.0	Mm.21135	NM_148948	ENSMUSG00000041415	Dicer1	1110006F08Rik|D12Ertd7e|mKIAA0928	dicer 1, ribonuclease type III	protein-coding	2.17282862815314	2.45715047455119	2.2727780541187	1.35967492980676	2.00563098268074	2.37624029217126	1.15075507157206	1.12644328421163	-0.853844272668425	0.443933587496002	0.912265842646861
Merged-chr14-75147341-2	chr14	75147241	75147441	+	683.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008879, intron 1 of 16)	L1_Mus3|LINE|L1	10916.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-95232635-1	chr4	95232535	95232735	+	844.0	f0_balb.idr	Intergenic	Intergenic	-180413.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	3.24778433351647	1.83920411118867	1.48942688716415	2.44789714324686	3.48767110422549	3.59515096173858	3.00937225569333	2.70926657732268	1.40120702344339	0.0788275084123446	0.427435573635723
Merged-chr13-98715937-1	chr13	98715837	98716037	+	708.0	f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-21106.0	NM_001025606	380863.0	Mm.28264	NM_001025606	ENSMUSG00000052485	Tmem171	Gm905	transmembrane protein 171	protein-coding	-0.811931713220967	0.262276239159172	-0.800897706757556	-0.804963365764255	-0.810877032287494	-0.794484724015066	-0.799752729236842	-0.804246193065187	-4.12943839737107	0.110396251188104	1
Merged-chr11-17212272-1	chr11	17212172	17212372	+	958.0	f0_c57.idr	promoter-TSS (NM_025443)	promoter-TSS (NM_025443)	379.0	NM_178909	103784.0	Mm.298132	NM_178909	ENSMUSG00000078970	Wdr92	AI553587|HZGJ	WD repeat domain 92	protein-coding	4.22367091405777	3.15379608743948	4.38335169172331	3.71795908491155	3.93351395423182	2.09489989649625	2.7978462070224	2.96415900940882	-1.21132979096944	0.0536853096782599	0.339246670744257
Merged-chr7-3665557-4	chr7	3665439	3665639	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_181820)	TTS (NM_181820)	301.0	NM_027203	69757.0	Mm.389782	NM_027203	ENSMUSG00000078813	Leng1	1500001K17Rik	leukocyte receptor cluster (LRC) member 1	protein-coding	5.71368427800854	5.74171915123898	6.30184626640016	4.79804672894213	5.73328287572019	5.07884415204955	6.03494535113591	6.14116895193299	0.0820799376458603	0.801639664984642	0.998431161219273
Merged-chr15-76243465-4	chr15	76243357	76243557	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163575)	promoter-TSS (NM_001163575)	-17.0	NM_001163575	671535.0	Mm.373750	NM_001163575	ENSMUSG00000063268	Parp10	-	poly (ADP-ribose) polymerase family, member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-44332063-4	chr19	44331974	44332174	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-1252.0	NM_183216	329065.0	Mm.313583	NM_183216	ENSMUSG00000050195	Scd4	ACOD4	stearoyl-coenzyme A desaturase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-21878073-2	chr3	21877973	21878173	+	542.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-198579.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126537034-2	chr8	126536934	126537134	+	772.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56402.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-75884267-4	chr15	75884172	75884372	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001282443, exon 14 of 14)	exon (NM_001282443, exon 14 of 14)	4451.0	NM_001282443	223645.0		NM_001282443	ENSMUSG00000098678	Mroh6	Gm19570	maestro heat-like repeat family member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64319667-1	chr5	64319567	64319767	+	915.0	f1_balb.idr	intron (NM_001289514, intron 13 of 18)	intron (NM_001289514, intron 13 of 18)	89310.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-69780509-2	chr14	69780409	69780609	+	915.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_020275, exon 7 of 8)	exon (NM_020275, exon 7 of 8)	13037.0	NM_020275	21933.0	Mm.193430	NM_020275	ENSMUSG00000022074	Tnfrsf10b	DR5|KILLER|Ly98|MK|TRAILR2|TRICK2A|TRICK2B|TRICKB	tumor necrosis factor receptor superfamily, member 10b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-111687185-4	chr4	111687081	111687281	+	810.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32829.0	NM_026470	67946.0	Mm.275526	NM_026470	ENSMUSG00000034401	Spata6	1700062C23Rik|AI790763|Hash|KRP|Mash	spermatogenesis associated 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-25858728-4	chr15	25858625	25858825	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034851, intron 1 of 8)	intron (NM_001034851, intron 1 of 8)	15427.0	NM_001034851	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-134764018-4	chr4	134763932	134764132	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145554, intron 1 of 8)	intron (NM_145554, intron 1 of 8)	3972.0	NM_145554	100017.0	Mm.27486	NM_145554	ENSMUSG00000037295	Ldlrap1	AA691260|ARH2|Arh|Arh1|FHCB1|FHCB2	low density lipoprotein receptor adaptor protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-86941934-2	chr5	86941834	86942034	+	619.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-15431.0	NM_152811	71773.0	Mm.26741	NM_152811	ENSMUSG00000035836	Ugt2b1	1300012D20Rik	UDP glucuronosyltransferase 2 family, polypeptide B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-45253295-3	chr9	45253140	45253340	+	926.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008348)	TTS (NM_008348)	13467.0	NR_106054	102466803.0		NR_106054	ENSMUSG00000098361	Mir7086	Gm27643|mmu-mir-7086	microRNA 7086	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91257434-2	chr2	91257334	91257534	+	908.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_028733, exon 1 of 11)	5' UTR (NM_028733, exon 1 of 11)	105.0	NM_028733	80708.0	Mm.236650	NM_028733	ENSMUSG00000027257	Pacsin3	4921507A02Rik|6330413E15Rik|AW413130	protein kinase C and casein kinase substrate in neurons 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-110858010-2	chr9	110857910	110858110	+	812.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146227)	promoter-TSS (NM_146227)	43.0	NM_146227	235631.0	Mm.102265	NM_146227	ENSMUSG00000048752	Prss50	79H19C|Tsp50	protease, serine 50	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-9150143-4	chr13	9150063	9150263	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172585, intron 9 of 17)	intron (NM_172585, intron 9 of 17)	56282.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-26902227-2	chr2	26902127	26902327	+	600.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009298, intron 1 of 4)	intron (NM_009298, intron 1 of 4)	660.0	NM_009298	20935.0	Mm.245577	NM_009298	ENSMUSG00000036160	Surf6	D2Wsu129e|Surf-6	surfeit gene 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80683455-2	chr10	80683355	80683555	+	694.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7162.0	NM_021462	17347.0	Mm.42126	NM_021462	ENSMUSG00000020190	Mknk2	2010016G11Rik|Gprk7|Mnk2	MAP kinase-interacting serine/threonine kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-61122766-3	chr18	61122649	61122849	+	804.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037859, intron 11 of 21)	Lx8|LINE|L1	5281.0	NR_105949	102466212.0		NR_105949	ENSMUSG00000098389	Mir6983	Gm27496|mmu-mir-6983	microRNA 6983	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-73201813-4	chr12	73201721	73201921	+	970.30835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008612, intron 6 of 7)	intron (NM_008612, intron 6 of 7)	78104.0	NM_008612	17420.0	Mm.246750	NM_008612	ENSMUSG00000021103	Mnat1	E130115E11Rik|MAT1|P36	menage a trois 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-101767305-4	chr13	101767206	101767406	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077495, intron 1 of 15)	CpG	911.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122700735-2	chr8	122700591	122700791	+	649.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1582.0	NM_009824	12398.0	Mm.194339	NM_009824	ENSMUSG00000006362	Cbfa2t3	A630044F12Rik|AI465270|AW229127|Cbfa2t3h|ETO-2|Eto2|MTGR2	core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human)	protein-coding	1.43438752303046	0.842129086357023	1.46043301830899	0.819320661760798	1.53686580206307	1.53017297220234	1.34737411982135	1.00982628560608	0.752445801958662	0.577978764345312	0.96590991010517
Merged-chr18-11860578-4	chr18	11860498	11860698	+	922.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022021, intron 1 of 8)	intron (NM_022021, intron 1 of 8)	-20160.0	NR_035447	100316686.0		NR_035447	ENSMUSG00000084565	Mir1901	Mirn1901|mmu-mir-1901	microRNA 1901	ncRNA	-0.0839796396414987	-0.068534967765138	-0.0735972802327326	0.343863118624358	-0.0830161198902927	0.127885535986429	0.106598235243034	0.641086884822574	1.49452592560874	0.494278773722846	1
Merged-chr11-50133111-2	chr11	50133011	50133211	+	577.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_029745, intron 1 of 20)	B1_Mus1|SINE|Alu	1751.0	NM_029745	76795.0	Mm.290975	NM_029745	ENSMUSG00000036644	Tbc1d9b	-	TBC1 domain family, member 9B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-83795783-2	chr5	83795683	83795883	+	617.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_T|LINE|L1	-440588.0	NM_153801	243078.0	Mm.126783	NM_153801	ENSMUSG00000049537	Tecrl	D330017N19Rik|Srd5a2l2	trans-2,3-enoyl-CoA reductase-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-74854533-4	chr13	74854443	74854643	+	923.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45783.0	NM_001301153	12380.0	Mm.29163	NM_009817	ENSMUSG00000021585	Cast	-	calpastatin	protein-coding	3.68111470911895	3.26954217590649	3.7525837942022	2.47314823902126	3.32113277290744	3.07823376345829	2.20315483190985	3.2614645686718	-0.570013008768587	0.383921194125238	0.875009253291411
Merged-chr2-70092885-1	chr2	70092785	70092985	+	605.0	f0_balb.idr	intron (NM_177376, intron 2 of 34)	MLT2B1|LTR|ERVL	53759.0	NM_177376	329421.0	Mm.99648	NM_177376	ENSMUSG00000042064	Myo3b	A430065P19Rik	myosin IIIB	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-86078243-2	chr5	86078143	86078343	+	851.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310639, intron 2 of 7)	intron (NM_001310639, intron 2 of 7)	6497.0	NM_001310639	56792.0	Mm.131237	NM_019992	ENSMUSG00000029254	Stap1	AI586015|Brdg1|STAP-1	signal transducing adaptor family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-42126882-4	chr9	42126779	42126979	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2582.0	NM_011436	20660.0	Mm.121920	NM_011436	ENSMUSG00000049313	Sorl1	2900010L19Rik|AI596264|AW261561|LR11|SorLA|gp250|mSorLA	sortilin-related receptor, LDLR class A repeats-containing	protein-coding	0.648470985962369	0.522060761446835	1.2197134428538	0.830363638088703	1.10415377793582	0.524073629697506	1.23289589624473	0.507362395327555	0.267203657974921	0.871269188365104	1
Merged-chr17-70854788-2	chr17	70854688	70854888	+	930.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1256.0	NM_001164074	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-100270784-2	chr6	100270684	100270884	+	552.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019743, intron 2 of 4)	MIRc|SINE|MIR	16574.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-108338778-3	chr12	108338663	108338863	+	782.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010010, intron 1 of 14)	intron (NM_010010, intron 1 of 14)	4447.0	NM_010010	13116.0	Mm.41911	NM_010010	ENSMUSG00000021259	Cyp46a1	CH24H|Cyp46	cytochrome P450, family 46, subfamily a, polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-112594042-2	chr12	112593942	112594142	+	800.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_198411, intron 1 of 22)	intron (NM_198411, intron 1 of 22)	5258.0	NM_198411	70435.0	Mm.250193	NM_198411	ENSMUSG00000037679	Inf2	2610204M08Rik|AA589465|AW125550|EG629699	inverted formin, FH2 and WH2 domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67115227-4	chr10	67115121	67115321	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12037.0	NM_207221	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-90740095-2	chr10	90739995	90740195	+	606.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_181398, intron 3 of 9)	RLTR30D_MM|LTR|ERV1	-89559.0	NM_001347054	77531.0	Mm.440605	NM_181398	ENSMUSG00000058589	Anks1b	AIDA-1|AIDA-1b|C030032C09Rik|E530015N03Rik|EB-1|Gm10937|Gm1555	ankyrin repeat and sterile alpha motif domain containing 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-92844036-2	chr8	92843936	92844136	+	671.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008610, intron 10 of 12)	intron (NM_008610, intron 10 of 12)	-11297.0	NM_173014	270084.0	Mm.21463	NM_173014	ENSMUSG00000033192	Lpcat2	1-AGPAT 11|A330042H22|Aytl1|Aytl1a|lpafat1|lysoPAFAT|lysoPAFAT/LPCAT2	lysophosphatidylcholine acyltransferase 2	protein-coding	0.483226119925324	0.516350570606596	0.659224887385575	0.0742197603283992	0.0698074279881415	0.0824398556728839	0.0782812025444143	0.0747689507189251	-4.00837565548187	0.0649306729821574	1
Merged-chr6-33962746-3	chr6	33962620	33962820	+	870.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009148, intron 17 of 17)	intron (NM_009148, intron 17 of 17)	-66728.0	NM_028886	74354.0	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-47537114-4	chr19	47537036	47537236	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175360)	promoter-TSS (NM_175360)	-17.0	NM_175360	108689.0	Mm.218048	NM_175360	ENSMUSG00000042694	Stn1	0610009H20Rik|2310057J23Rik|AAF-44|AAF44|AI413458|Obfc1|RPA-32	STN1, CST complex subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-107253703-4	chr4	107253618	107253818	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355459)	promoter-TSS (NM_001355459)	26.0	NM_001355460	72938.0	Mm.21787	NM_028394	ENSMUSG00000063172	Hspb11	2900042B11Rik|IFT25|PP25	heat shock protein family B (small), member 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-105678379-2	chr5	105678279	105678479	+	836.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-21590.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-26371883-3	chr16	26371759	26371959	+	768.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016674)	promoter-TSS (NM_016674)	-20.0	NM_016674	12737.0	Mm.289441	NM_016674	ENSMUSG00000022512	Cldn1	AI596271	claudin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-4967195-1	chr1	4967095	4967295	+	704.0	f0_balb.idr	intron (NM_001177795, intron 2 of 5)	intron (NM_001177795, intron 2 of 5)	51539.0	NM_001290372	58175.0	Mm.103771	NM_021374	ENSMUSG00000002459	Rgs20	2900073E09Rik|Rgsz1	regulator of G-protein signaling 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124671119-4	chr6	124671020	124671220	+	983.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149320, intron 1 of 11)	intron (NR_149320, intron 1 of 11)	8016.0	NM_145130	14792.0	Mm.273915	NM_145130	ENSMUSG00000004270	Lpcat3	C3f|Grcc3f|Lpcat|Lpeat|Lplat5|Lpsat|Mboat5|Moact5|Oact5|PTG	lysophosphatidylcholine acyltransferase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-136605511-3	chr1	136605409	136605609	+	660.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19392.0	NM_177643	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-29318888-4	chr11	29318786	29318986	+	969.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A3|LTR|ERVL-MaLR	-55286.0	NM_176841	108686.0	Mm.338284	NM_176841	ENSMUSG00000032740	Ccdc88a	A430106J12Rik|AI848406|Ape|C130096N06Rik|C330012F17Rik|D130005J21Rik|Girdin|Giv|Grdn|Hkrp1	coiled coil domain containing 88A	protein-coding	2.83770778420959	3.49593283904563	3.2898383596733	2.4860253581847	2.75607576877707	4.36672867633543	2.74159833503835	3.77891165759657	0.811225191606208	0.216952791577473	0.707538695710375
Merged-chr6-125152574-2	chr6	125152474	125152674	+	605.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_126495, exon 5 of 9)	non-coding (NR_126495, exon 5 of 9)	7350.0	NM_001302779	320678.0	Mm.129415	NM_178787	ENSMUSG00000038271	Iffo1	4733401N06Rik|A930037G23Rik|HOM-TES-103|Iffo	intermediate filament family orphan 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-98693620-4	chr13	98693517	98693717	+	969.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025606, intron 1 of 3)	intron (NM_001025606, intron 1 of 3)	1214.0	NM_001025606	380863.0	Mm.28264	NM_001025606	ENSMUSG00000052485	Tmem171	Gm905	transmembrane protein 171	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-94629721-4	chr11	94629634	94629834	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133807)	promoter-TSS (NM_133807)	-90.0	NM_133807	98238.0	Mm.172720	NM_133807	ENSMUSG00000020869	Lrrc59	AA959742|C78668	leucine rich repeat containing 59	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-125622744-1	chr7	125622644	125622844	+	932.0	f1_c57bl6.idr	intron (NM_021887, intron 1 of 8)	intron (NM_021887, intron 1 of 8)	19315.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	-1.39239040096365	-1.50706362993767	-1.51637061241093	-1.52401564492204	-1.25712099376264	-1.5050467680107	-1.51426371558223	-1.52264718775774	0.640753741356348	0.855918148133186	1
Merged-chr8-117358551-2	chr8	117358451	117358651	+	760.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028941, intron 1 of 20)	intron (NM_028941, intron 1 of 20)	9381.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-137834963-2	chr5	137834863	137835063	+	627.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_153510, intron 2 of 6)	intron (NM_153510, intron 2 of 6)	1315.0	NM_153510	231805.0	Mm.379385	NM_153510	ENSMUSG00000046245	Pilra	AV021745|FDF03	paired immunoglobin-like type 2 receptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-111144593-2	chr8	111144493	111144693	+	569.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_040363, intron 1 of 3)	B1_Mm|SINE|Alu	905.0	NR_040363	434350.0	Mm.442061	NR_040363		9430091E24Rik	-	RIKEN cDNA 9430091E24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-75814816-2	chr3	75814716	75814916	+	616.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MMVL30-int|LTR|ERV1	142133.0	NM_175193	73124.0	Mm.249232	NM_175193	ENSMUSG00000034109	Golim4	3110027H23Rik|GIMPC|GPP130|Golph4|P138	golgi integral membrane protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116446156-4	chr11	116446074	116446274	+	909.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033267, intron 7 of 13)	intron (NM_001033267, intron 7 of 13)	8173.0	NM_001033267	217341.0	Mm.387352	NM_001033267	ENSMUSG00000070331	Qrich2	Gm66	glutamine rich 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75445691-2	chr11	75445591	75445791	+	697.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_138950, exon 7 of 10)	exon (NM_138950, exon 7 of 10)	-6190.0	NM_008878	18816.0	Mm.279733	NM_008878	ENSMUSG00000038224	Serpinf2	AI747498|Pli|Serpimf2	serine (or cysteine) peptidase inhibitor, clade F, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118732628-2	chr9	118732528	118732728	+	580.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 1 of 13)	intron (NM_001113514, intron 1 of 13)	20936.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-62392031-1	chr15	62391931	62392131	+	576.0	f0_balb.idr	Intergenic	Intergenic	-172580.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91538687-4	chr16	91538586	91538786	+	945.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8408.0	NM_008338	15980.0	Mm.249364	NM_008338	ENSMUSG00000022965	Ifngr2	Ifgr2|Ifgt	interferon gamma receptor 2	protein-coding	-1.84303373260285	-1.81303463126392	-1.82210660711932	-1.82955859819738	-1.84092785115721	-1.81106869625141	-1.8200529106377	-1.54273750312762	1.50114612804783	0.670102668014672	1
Merged-chr4-19919046-2	chr4	19918944	19919144	+	776.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_175406, intron 1 of 7)	intron (NM_175406, intron 1 of 7)	3522.0	NM_175406	242341.0	Mm.19298	NM_175406	ENSMUSG00000028238	Atp6v0d2	1620401A02Rik|AI324824|V-ATPase	ATPase, H+ transporting, lysosomal V0 subunit D2	protein-coding	0.952850618959659	1.58443351585422	1.41849276494064	1.14319469169114	0.648151818094929	0.684262347548034	0.672656632568897	1.27054575884424	-2.08396098670789	0.171471610991909	0.638977466813629
Merged-chr10-79858629-2	chr10	79858529	79858729	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077363, intron 2 of 13)	intron (NM_001077363, intron 2 of 13)	-3658.0	NR_029447	414101.0	Mm.401339	NR_029447	ENSMUSG00000091994	E130317F20Rik	-	RIKEN cDNA E130317F20 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67200984-2	chr10	67200884	67201084	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_207221, intron 3 of 25)	intron (NM_207221, intron 3 of 25)	15234.0	NM_001242396	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-45853112-4	chr11	45853019	45853219	+	974.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045520, intron 1 of 11)	intron (NM_001045520, intron 1 of 11)	1155.0	NM_001045520	216705.0	Mm.169673	NM_001045520	ENSMUSG00000006169	Clint1	AI642036|AW537616|C530049I24Rik|Enth|Epn4|F630206G17Rik|mKIAA0171	clathrin interactor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128933821-3	chr10	128933751	128933951	+	880.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001330160)	promoter-TSS (NM_001330160)	38.0	NM_001330160	16404.0	Mm.179747	NM_008398	ENSMUSG00000025348	Itga7	[a]7|alpha7	integrin alpha 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-40236805-4	chr4	40236716	40236916	+	842.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172689, intron 1 of 17)	intron (NM_172689, intron 1 of 17)	3009.0	NM_172689	230073.0	Mm.86382	NM_172689	ENSMUSG00000040296	Ddx58	6430573D20Rik|C330021E21|RIG-I|RLR-1	DEAD (Asp-Glu-Ala-Asp) box polypeptide 58	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-53863907-5	chr3	53863802	53864002	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026435)	promoter-TSS (NM_026435)	-95.0	NM_026435	67890.0	Mm.23067	NM_026435	ENSMUSG00000027746	Ufm1	1810045K17Rik|AI132708|AI463323|Gm10726	ubiquitin-fold modifier 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134115155-4	chr6	134115059	134115259	+	979.5166630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 2 of 8)	intron (NM_001303102, intron 2 of 8)	79459.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	2.05685426404568	3.08088367775426	2.75334964844861	1.88793347951127	1.4433391592301	1.32374263097253	2.4946331447747	2.30580361009295	-1.19316810697662	0.212262829747032	0.70170722758217
Merged-chr19-14677182-4	chr19	14677073	14677273	+	987.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR11B|LTR|ERVK	-78990.0	NM_001302947	21888.0	Mm.103638	NM_011600	ENSMUSG00000024642	Tle4	5730411M05Rik|AA792082|Bce-1|Bce1|ESTM13|ESTM14|Grg4|X83332|X83333|grg-4	transducin-like enhancer of split 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-182895933-2	chr1	182895833	182896033	+	828.666687	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001356463, exon 8 of 8)	3' UTR (NM_001356463, exon 8 of 8)	-58855.0	NM_016928	53791.0	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-38078941-4	chr15	38078853	38079053	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081359)	promoter-TSS (NM_001081359)	-99.0	NM_001081359	70790.0	Mm.476840	NM_027553	ENSMUSG00000037487	Ubr5	Edd|Edd1	ubiquitin protein ligase E3 component n-recognin 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-103271465-2	chr15	103271365	103271565	+	562.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-1423.0	NM_019817	56447.0	Mm.29473	NM_019817	ENSMUSG00000060992	Copz1	5930435A22Rik|AA407760|D4Ertd360e	coatomer protein complex, subunit zeta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-3891136-2	chr11	3891036	3891236	+	579.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026150, intron 1 of 2)	RLTR28|LTR|ERVL	3990.0	NM_026150	67430.0	Mm.347950	NM_026150	ENSMUSG00000020434	4921536K21Rik	AV043724	RIKEN cDNA 4921536K21 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-11687674-2	chr2	11687574	11687774	+	648.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008367, intron 7 of 7)	intron (NM_008367, intron 7 of 7)	-17619.0	NM_001271498	16169.0	Mm.200196	NM_008358	ENSMUSG00000023206	Il15ra	AA690181|IL-15RA	interleukin 15 receptor, alpha chain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-90021247-4	chr7	90021152	90021352	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7907.0	NR_110365	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	2.74153610905624	3.09391891955725	3.29313322961856	2.89846612393923	3.14196541189827	3.52230810166974	4.35361480019164	2.79416127540021	0.916056122145436	0.143046997600002	0.5904731564462
Merged-chr11-97804047-2	chr11	97803947	97804147	+	623.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010688, intron 1 of 6)	intron (NM_010688, intron 1 of 6)	4482.0	NM_010688	16796.0	Mm.271967	NM_010688	ENSMUSG00000038366	Lasp1	AA408629|Def-4|LASP-1|MLN 50|SH3P6|Tg(Col1a1-lacZ)1Ngma	LIM and SH3 protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-43909575-1	chr5	43909475	43909675	+	730.0	f1_balb.idr	intron (NM_007646, intron 7 of 7)	intron (NM_007646, intron 7 of 7)	40766.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-31211191-3	chr9	31211091	31211291	+	977.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357698, intron 1 of 17)	CpG	657.0	NM_001357698	11804.0	Mm.19133	NM_009691	ENSMUSG00000031996	Aplp2	AI790698|APLP-2|CDEBP	amyloid beta (A4) precursor-like protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-35890687-4	chr1	35890586	35890786	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-177714.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-120478648-4	chr6	120478429	120478629	+	901.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008359, intron 11 of 12)	MIR|SINE|MIR	15278.0	NM_033567	94047.0	Mm.23088	NM_033567	ENSMUSG00000094626	Tmem121b	AW048664|Cecr6	transmembrane protein 121B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-20521450-4	chr9	20521354	20521554	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001082485)	promoter-TSS (NM_001082485)	-35.0	NM_001082485	77519.0	Mm.431849	NM_001082485	ENSMUSG00000060510	Zfp266	5330440G10Rik|5730601F06Rik|AW552317	zinc finger protein 266	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-11602663-4	chr4	11602557	11602757	+	831.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039556, intron 8 of 14)	intron (NM_001039556, intron 8 of 14)	22995.0	NM_001256142	100503583.0	Mm.249437	NM_001256142	ENSMUSG00000094595	Fsbp	-	fibrinogen silencer binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-57769257-4	chr6	57769147	57769347	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146168, intron 3 of 4)	intron (NM_146168, intron 3 of 4)	55878.0	NM_146168	232023.0	Mm.24642	NM_146168	ENSMUSG00000037788	Vopp1	AW146242|Ecop	vesicular, overexpressed in cancer, prosurvival protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75466983-2	chr11	75466883	75467083	+	569.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_030711)	TTS (NR_030711)	-1067.0	NM_001291156	380712.0	Mm.41393	NM_027249	ENSMUSG00000038217	Tlcd2	-	TLC domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129794127-3	chr4	129793969	129794169	+	980.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26410.0	NM_008974	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	-0.10020418252154	-0.208727928701546	-0.0634688165541347	-0.0772857622899083	0.103134339181361	-0.208010023464426	-0.0595167270775692	0.0453232120523581	0.970423634964247	0.638519103486051	1
Merged-chr15-97784302-4	chr15	97784195	97784395	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026353)	promoter-TSS (NM_026353)	-70.0	NM_026353	67739.0	Mm.28955	NM_026353	ENSMUSG00000081534	Slc48a1	4930570C03Rik	solute carrier family 48 (heme transporter), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-45031038-4	chr13	45030957	45031157	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28961.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	4.32094217186919	3.73622617962259	3.60781310048367	4.27012161880143	4.97741825014334	4.01097873670707	2.95041769564476	3.60652555164381	0.116454276645291	0.829438732736892	0.998431161219273
Merged-chr12-85459117-2	chr12	85459017	85459217	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-14773.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-105155778-3	chr5	105155673	105155873	+	903.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-16187.0	NM_001359080	17472.0	Mm.440525	NM_008620	ENSMUSG00000079363	Gbp4	AW228052|Mag-2|Mpa-2|Mpa2	guanylate binding protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-58022977-2	chr15	58022877	58023077	+	988.4166869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_029418, intron 5 of 5)	intron (NM_029418, intron 5 of 5)	11317.0	NM_029418	75758.0	Mm.455792	NM_029418	ENSMUSG00000101892	9130401M01Rik	AI849328	RIKEN cDNA 9130401M01 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-43711287-4	chr19	43711219	43711419	+	958.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053103, intron 5 of 12)	intron (NM_053103, intron 5 of 12)	21630.0	NM_053103	93685.0	Mm.248237	NM_053103	ENSMUSG00000025192	Entpd7	1810012B13Rik|1810020C02Rik|2810003F23Rik|LALP1|Lysal2	ectonucleoside triphosphate diphosphohydrolase 7	protein-coding	2.43121850813708	2.54184104503472	2.3443239714464	2.38154706396902	1.44735371806468	1.82918631717401	2.90116262475219	1.26400556734381	-0.828781654504294	0.395670076436126	0.883263999704907
Merged-chr5-136953889-4	chr5	136953794	136953994	+	995.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347504, intron 1 of 3)	intron (NM_001347504, intron 1 of 3)	619.0	NM_001347504	66437.0	Mm.25849	NM_025562	ENSMUSG00000019054	Fis1	2010003O14Rik|Ttc11	fission, mitochondrial 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-19998189-4	chr11	19998080	19998280	+	998.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_033523, exon 2 of 6)	exon (NM_033523, exon 2 of 6)	73738.0	NM_033523	114716.0	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding	2.01702686614333	1.91394464090825	3.44041127031027	2.5011403505922	2.48464247530745	1.69365537590741	2.88434955294065	1.8049111463792	-0.637737969366942	0.473426111884462	0.926125823511231
Merged-chr16-92676689-4	chr16	92676619	92676819	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111022, intron 4 of 6)	intron (NM_001111022, intron 4 of 6)	20610.0	NM_001111023	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-13566566-2	chr8	13566466	13566666	+	547.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_009025)	TTS (NM_009025)	-4105.0	NM_001080781	66501.0	Mm.46136	NM_025601	ENSMUSG00000031452	1700029H14Rik	-	RIKEN cDNA 1700029H14 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-103982438-4	chr11	103982315	103982515	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007477, intron 4 of 4)	intron (NM_007477, intron 4 of 4)	15544.0	NM_007477	11841.0	Mm.5061	NM_007477	ENSMUSG00000062421	Arf2	-	ADP-ribosylation factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-21792186-4	chr13	21792089	21792289	+	914.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	4701.0	NM_001290466	319188.0	Mm.264645	NM_178202	ENSMUSG00000069308	Hist1h2bp	-	histone cluster 1, H2bp	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-138162106-2	chr5	138162006	138162206	+	818.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_012002, intron 3 of 9)	intron (NM_012002, intron 3 of 9)	1004.0	NM_012002	26893.0	Mm.3981	NM_012002	ENSMUSG00000019494	Cops6	Sgn3|VIP/MOV34	COP9 signalosome subunit 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-93833049-4	chr16	93832942	93833142	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045529, intron 1 of 16)	PB1D11|SINE|Alu	921.0	NM_001045529	338467.0	Mm.287329	NM_001045529	ENSMUSG00000039456	Morc3	1110051N18Rik|AI452146|BF318192|D16Jhu32e|NXP2|Zcwcc3	microrchidia 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-60837489-2	chr11	60837389	60837589	+	575.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001172112, intron 1 of 6)	intron (NM_001172112, intron 1 of 6)	6858.0	NM_145428	216820.0	Mm.21475	NM_145428	ENSMUSG00000042569	Dhrs7b	BC003479|C79874|C80074|PexRAP	dehydrogenase/reductase (SDR family) member 7B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-98481652-4	chr15	98481546	98481746	+	864.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010679, intron 2 of 3)	intron (NM_010679, intron 2 of 3)	1037.0	NM_010679	16770.0	Mm.5074	NM_010679	ENSMUSG00000022991	Lalba	AW208827|Lyzg	lactalbumin, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-32696938-3	chr9	32696836	32697036	+	917.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038642, intron 1 of 6)	intron (NM_001038642, intron 1 of 6)	894.0	NM_001038642	23871.0	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	-0.606822787670297	-0.0938688232365644	-0.0211465303196382	-0.602047620713827	-0.606112524057947	-0.59460042307239	-0.598348119947124	-0.601545044767888	-3.37754250450525	0.224652465372608	1
Merged-chr2-6643459-2	chr2	6643359	6643559	+	581.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110232, intron 5 of 15)	intron (NM_001110232, intron 5 of 15)	78203.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133201276-6	chr4	133201142	133201342	+	934.9722289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5587.0	NR_105984	102466215.0		NR_105984	ENSMUSG00000099202	Mir7017	Gm27945|mmu-mir-7017	microRNA 7017	ncRNA	1.9757017181046	2.78080089494805	3.44567429172469	2.60921030927104	2.68008845920537	2.40558898632053	2.81117917326322	1.70100238290166	-0.675120111184314	0.404607995021557	0.889684743035763
Merged-chr6-88084723-7	chr6	88084616	88084816	+	941.460327	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_133933, exon 1 of 10)	exon (NM_133933, exon 1 of 10)	243.0	NM_133933	103963.0	Mm.188544	NM_133933	ENSMUSG00000030062	Rpn1	AU018702|D6Wsu137e|Rpn-1	ribophorin I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-85766233-3	chr1	85766134	85766334	+	714.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9037.0	NR_108086	77762.0	Mm.434298	NR_108086	ENSMUSG00000100217	9930111H07Rik	-	RIKEN cDNA 9930111H07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-49016844-1	chr16	49016744	49016944	+	717.0	f0_balb.idr	intron (NM_172616, intron 19 of 20)	intron (NM_172616, intron 19 of 20)	22656.0	NM_172616	224171.0	Mm.24491	NM_172616	ENSMUSG00000033031	C330027C09Rik	AA408511|AU018569|Cip2a|Kiaa1524	RIKEN cDNA C330027C09 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-105574961-1	chr10	105574861	105575061	+	546.0	f1_c57bl6.idr	promoter-TSS (NM_177368)	promoter-TSS (NM_177368)	410.0	NR_038032	327812.0	Mm.191660	NR_038032	ENSMUSG00000085282	Gm15663	9330159K06	predicted gene 15663	ncRNA	1.36050376245913	1.76882447804174	3.31261711179632	1.1699111016401	1.74941270081388	2.66388125076776	2.46400544348879	2.26973177265361	0.146991025902529	0.886384050679829	0.998431161219273
Merged-chr11-46431385-4	chr11	46431281	46431481	+	857.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5566.0	NM_001104557	66213.0	Mm.24159	NM_025426	ENSMUSG00000020397	Med7	1110063B05Rik|Crsp33|Crsp9	mediator complex subunit 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120822675-2	chr11	120822575	120822775	+	586.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_007988, intron 2 of 42)	intron (NM_007988, intron 2 of 42)	1872.0	NM_007988	14104.0	Mm.236443	NM_007988	ENSMUSG00000025153	Fasn	A630082H08Rik|FAS	fatty acid synthase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28359975-2	chr7	28359875	28360075	+	796.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001083912, exon 19 of 19)	exon (NM_001083912, exon 19 of 19)	8435.0	NR_028129	100302567.0		NR_028129		AF357399	MBI-142	snoRNA AF357399	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-95827196-4	chr11	95827106	95827306	+	811.762512	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153104, intron 1 of 2)	intron (NM_153104, intron 1 of 2)	2706.0	NM_153104	237928.0	Mm.133075	NM_153104	ENSMUSG00000050860	Phospho1	D11Moh36|Phospo1	phosphatase, orphan 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-110960438-4	chr13	110960340	110960540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56594.0	NR_131194	102636142.0	Mm.417611	NR_131194		4930526H09Rik	-	RIKEN cDNA 4930526H09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-59821090-4	chr13	59821009	59821209	+	892.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153538, intron 2 of 27)	C-rich|Low_complexity|Low_complexity	2038.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-22889621-4	chr8	22889526	22889726	+	932.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081149, intron 3 of 17)	intron (NM_001081149, intron 3 of 17)	30087.0	NM_001081149	244349.0	Mm.182776	NM_001081149	ENSMUSG00000031540	Kat6a	1500036M03|9930021N24Rik|MOZ|Myst3|Zfp220	K(lysine) acetyltransferase 6A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-29438583-2	chr19	29438483	29438683	+	670.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021396, intron 3 of 5)	B4A|SINE|B4	27664.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-13866861-4	chr16	13866760	13866960	+	949.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039533, intron 8 of 22)	intron (NM_001039533, intron 8 of 22)	36285.0	NM_001039533	94184.0	Mm.171484	NM_053181	ENSMUSG00000022680	Pdxdc1	2210010A19Rik|AA415817|Kiaa0251-hp	pyridoxal-dependent decarboxylase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-101367452-4	chr4	101367373	101367573	+	812.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040640, intron 2 of 3)	intron (NR_040640, intron 2 of 3)	-11225.0	NR_040708	77866.0	Mm.137053	NR_040708	ENSMUSG00000086782	E130102H24Rik	-	RIKEN cDNA E130102H24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-131022417-1	chr6	131022317	131022517	+	556.0	f0_balb.idr	Intergenic	Intergenic	224945.0	NM_001170851	16633.0	Mm.4783	NM_008462	ENSMUSG00000030187	Klra2	Klra30|Ly49b	killer cell lectin-like receptor, subfamily A, member 2	protein-coding	-0.899922854013325	-0.887109844254568	-0.894192548302204	-0.896351257249948	-0.524096507499593	-0.884464025606667	-0.437305640795677	-0.895974523573804	2.97790224550765	0.327267979253912	1
Merged-chr8-111659854-2	chr8	111659754	111659954	+	625.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011742, intron 2 of 3)	MERVL_2A-int|LTR|ERVL	16411.0	NM_011742	22640.0	Mm.4184	NM_011742	ENSMUSG00000055835	Zfp1	Fnp-1|Zfp-1|mkr-1	zinc finger protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180794356-4	chr1	180794294	180794494	+	815.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	19211.0	NM_008210	15078.0	Mm.138832	NM_008210	ENSMUSG00000060743	H3f3a	EyeLinc14|H3.3A	H3 histone, family 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-3150169-2	chr5	3150069	3150269	+	587.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-193724.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-92332624-4	chr5	92332550	92332750	+	994.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310664, intron 1 of 10)	intron (NM_001310664, intron 1 of 10)	823.0	NM_001310664	109979.0	Mm.263514	NM_181728	ENSMUSG00000034842	Art3	4930569O04Rik|ARTC3	ADP-ribosyltransferase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36939823-4	chr1	36939706	36939906	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018872)	promoter-TSS (NM_018872)	-279.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139781629-3	chr5	139781496	139781696	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5918.0	NM_026748	68510.0	Mm.292942	NM_026748	ENSMUSG00000029547	Ints1	1110015K06Rik	integrator complex subunit 1	protein-coding	1.33615762287781	1.59644673346962	2.67025752552564	2.72529697656766	3.90544552712982	4.1409355481399	4.98142155475873	4.36252323709067	3.43489488948469	3.10706855834672e-07	2.38965439506692e-05
Merged-chr2-24962414-4	chr2	24962325	24962525	+	997.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355558)	promoter-TSS (NM_001355558)	3.0	NM_026044	67228.0	Mm.389248	NM_026044	ENSMUSG00000026975	Dph7	2810443J12Rik|AW060693|Wdr85	diphthamine biosynethesis 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-65815366-2	chr16	65815255	65815455	+	677.458374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028572)	promoter-TSS (NM_028572)	-278.0	NM_028572	73569.0	Mm.25670	NM_028572	ENSMUSG00000091243	Vgll3	1700110N18Rik|4832416J22|C80713|Vgl-3|Vito-2	vestigial like family member 3	protein-coding	2.30157825708329	2.70389580134933	2.50006174533136	2.81051805019499	2.42503705738398	1.97626124019315	3.20673509178495	1.39053182215299	-0.308342227233422	0.725087218309655	0.998431161219273
Merged-chr8-57479861-1	chr8	57479761	57479961	+	742.0	f0_balb.idr	Intergenic	Intergenic	7999.0	NM_021788	60406.0	Mm.118	NM_021788	ENSMUSG00000031609	Sap30	30kDa	sin3 associated polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-121795907-2	chr14	121795807	121796007	+	837.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134074, intron 1 of 52)	intron (NM_134074, intron 1 of 52)	1827.0	NM_134074	105445.0	Mm.378591	NM_134074	ENSMUSG00000025558	Dock9	AA959601|AW538057|B230309H04Rik|D14Wsu89e|Zizimin1|mKIAA1058	dedicator of cytokinesis 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-98994099-4	chr15	98994006	98994206	+	946.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8141.0	NR_045991	75951.0	Mm.441657	NR_045991	ENSMUSG00000097587	4930578M01Rik	3010001K12Rik	RIKEN cDNA 4930578M01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90582486-1	chr2	90582386	90582586	+	595.0	f0_c57.idr	Intergenic	Intergenic	-1839.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-98030728-2	chr3	98030628	98030828	+	564.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010928, intron 1 of 33)	intron (NM_010928, intron 1 of 33)	17190.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21515526-4	chr9	21515417	21515617	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5283.0	NR_136911	17083.0	Mm.196618	NM_010744	ENSMUSG00000032180	Tmed1	Il1rl1l|Ly84l|St2l	transmembrane p24 trafficking protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-161500527-4	chr1	161500421	161500621	+	989.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183391, intron 2 of 2)	intron (NM_183391, intron 2 of 2)	5864.0	NM_183391	240873.0	Mm.276823	NM_183391	ENSMUSG00000066755	Tnfsf18	Gitrl|Tnlg2a	tumor necrosis factor (ligand) superfamily, member 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-111429701-2	chr7	111429601	111429801	+	778.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-307026.0	NR_015573	75479.0	Mm.381620	NR_015573	ENSMUSG00000110424	1700012D14Rik	-	RIKEN cDNA 1700012D14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-4126572-4	chr10	4126457	4126657	+	966.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170785, intron 26 of 27)	intron (NM_001170785, intron 26 of 27)	86563.0	NR_152620	102632515.0	Mm.416995	NR_152620	ENSMUSG00000111266	Gm30570	-	predicted gene, 30570	ncRNA	-1.17496621253595	-1.15081052752249	-1.16154650704664	-1.17036536028253	-0.694716923764521	-1.1484839959734	-0.990190146178075	-1.16878678976971	2.59613346485179	0.426474599917637	1
Merged-chr12-67059417-2	chr12	67059292	67059492	+	813.333313	f0_balb.idr|f1_balb.idr	intron (NM_001193266, intron 1 of 16)	GSAT_MM|Satellite|Satellite	163157.0	NM_001193266	320772.0	Mm.227680	NM_207010	ENSMUSG00000034912	Mdga2	6720489L24Rik|9330209L04Rik|Adp|Mamdc1	MAM domain containing glycosylphosphatidylinositol anchor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-135608353-4	chr3	135608254	135608454	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008689, intron 12 of 24)	intron (NM_008689, intron 12 of 24)	83193.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	3.83663931070667	4.22048006398029	3.76833393789786	4.65006549533941	3.91860327658315	3.26039783858018	3.14479177799963	2.44848184956795	-1.2354859169696	0.0238576917557136	0.202210626487026
Merged-chr19-12574319-4	chr19	12574191	12574391	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026640, intron 1 of 3)	intron (NM_026640, intron 1 of 3)	766.0	NM_026640	107373.0	Mm.1643	NM_026640	ENSMUSG00000024691	Fam111a	4632417K18Rik|AW413625	family with sequence similarity 111, member A	protein-coding	3.82156874270227	3.18103372731813	2.84816726454539	3.47711695060895	3.19454218873713	3.09313031332494	2.42287793769569	3.27392352321225	-0.583467850585165	0.345953499147965	0.846788703217298
Merged-chr2-118895223-1	chr2	118895123	118895323	+	548.0	f1_c57bl6.idr	Intergenic	Intergenic	-6392.0	NM_001045523	228536.0	Mm.330487	NM_001045523	ENSMUSG00000040007	Bahd1	AL022997|AW541238|Gm117|mKIAA0945	bromo adjacent homology domain containing 1	protein-coding	0.0865812269911791	0.117013096136088	1.43740922246336	0.0995792151492113	0.0885370282016237	0.119189257501791	0.679864026513443	0.487359301718092	-1.15765032617442	0.566454325084169	1
Merged-chr17-34557143-4	chr17	34557016	34557216	+	994.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-7179.0	NM_010929	18132.0	Mm.173813	NM_010929	ENSMUSG00000015468	Notch4	Int-3|Int3|N4	notch 4	protein-coding	1.74853348745833	0.895489296095134	2.03394342237378	0.851315086154295	2.03911873955247	0.900878808541425	2.54285833300536	0.854798127632878	0.81986315459372	0.721195427926091	0.998431161219273
Merged-chr9-87171254-4	chr9	87171156	87171356	+	887.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001101482, intron 2 of 3)	intron (NM_001101482, intron 2 of 3)	22028.0	NM_001359955	244958.0	Mm.335337	NM_001101482	ENSMUSG00000042761	Mrap2	BB633055	melanocortin 2 receptor accessory protein 2	protein-coding	0.149810753025326	0.174232574700392	0.53084667056123	1.25918989697768	0.581716587058796	0.176006632350788	0.168068294340922	0.349481913945941	-1.70917680164317	0.379288507763422	1
Merged-chr16-48675793-2	chr16	48675693	48675893	+	993.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	96163.0	NM_198297	77647.0	Mm.167298	NM_198297	ENSMUSG00000030775	Trat1	C030046M14Rik|Tcrim|Trim	T cell receptor associated transmembrane adaptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-76377954-4	chr12	76377856	76378056	+	965.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178744, intron 1 of 1)	intron (NM_178744, intron 1 of 1)	7690.0	NM_178744	268564.0	Mm.77065	NM_178744	ENSMUSG00000033454	Zbtb1	9430077A12|AI256369|Bsg2|C430003J21Rik	zinc finger and BTB domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-25331451-1	chr8	25331351	25331551	+	572.0	f0_balb.idr	Intergenic	Intergenic	-25181.0	NR_040352	74489.0	Mm.256468	NR_040352	ENSMUSG00000110140	5430421F17Rik	-	RIKEN cDNA 5430421F17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105326350-4	chr8	105326261	105326461	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177449)	promoter-TSS (NM_177449)	-3.0	NM_025486	66320.0	Mm.29990	NM_025486	ENSMUSG00000014856	Tmem208	1700006C06Rik|2610030K20Rik|Hspc171	transmembrane protein 208	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-9390340-4	chr14	9390246	9390446	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-493749.0	NR_030680	100042415.0	Mm.235938	NR_030680	ENSMUSG00000089686	Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-83733046-2	chr8	83732946	83733146	+	557.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011925, intron 4 of 19)	RLTR40|LTR|ERVK	8265.0	NM_001163029	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-172563211-4	chr1	172563171	172563371	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_027644, exon 6 of 6)	non-coding (NR_027644, exon 6 of 6)	3365.0	NR_027644	240916.0	Mm.71940	NM_177723	ENSMUSG00000049598	Vsig8	A030011M19|EG240916	V-set and immunoglobulin domain containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-160645843-4	chr2	160645736	160645936	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009408)	promoter-TSS (NM_009408)	-61.0	NM_009408	21969.0	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89920939-2	chr3	89920839	89921039	+	562.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4|LINE|L1	-7743.0	NM_010559	16194.0	Mm.2856	NM_010559	ENSMUSG00000027947	Il6ra	CD126|IL-6R|IL-6R-alpha|IL-6RA|Il6r	interleukin 6 receptor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-26689353-4	chr8	26689253	26689453	+	859.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	135070.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	1.462911054275	2.03164175966518	1.01239903460939	1.79148156857674	1.33389269757306	1.93305580963048	1.01686391951885	2.0915080304506	0.124067179987692	0.918262839731798	0.998431161219273
Merged-chr9-45608269-3	chr9	45608168	45608368	+	779.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081270, intron 3 of 32)	intron (NM_001081270, intron 3 of 32)	-177036.0	NR_040732	74602.0	Mm.394117	NR_040732	ENSMUSG00000097074	4833428L15Rik	-	RIKEN cDNA 4833428L15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-102913026-2	chr9	102912974	102913174	+	619.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	78154.0	NM_001284258	20187.0	Mm.335391	NM_013649	ENSMUSG00000032547	Ryk	AW536699|ERK-3|Vik	receptor-like tyrosine kinase	protein-coding	-1.01372586573209	-0.994162335729209	-1.00660846485972	-1.00980964752674	-1.01314284338918	-0.348553270733828	-1.00379093403596	-0.832227498114102	3.00260083539824	0.32495838854254	1
Merged-chr4-133174528-4	chr4	133174412	133174612	+	966.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153423, intron 1 of 8)	intron (NM_153423, intron 1 of 8)	-21143.0	NR_105984	102466215.0		NR_105984	ENSMUSG00000099202	Mir7017	Gm27945|mmu-mir-7017	microRNA 7017	ncRNA	3.03030966508035	3.39190676727673	3.09215983268899	3.55666973450765	2.77425279529479	3.11121365157983	3.11611412253552	3.57385760554514	-0.180668381452334	0.760878862767985	0.998431161219273
Merged-chr4-40240400-2	chr4	40240300	40240500	+	557.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172689)	promoter-TSS (NM_172689)	-575.0	NM_172689	230073.0	Mm.86382	NM_172689	ENSMUSG00000040296	Ddx58	6430573D20Rik|C330021E21|RIG-I|RLR-1	DEAD (Asp-Glu-Ala-Asp) box polypeptide 58	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-76350032-3	chr10	76349927	76350127	+	656.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15-int|LTR|ERVL	-4736.0	NM_001081419	64451.0	Mm.33183	NM_001081419	ENSMUSG00000020231	Dip2a	4931420H10Rik|AI426328|Dip2|Kiaa0184-hp|mKIAA0184	disco interacting protein 2 homolog A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-134930807-4	chr4	134930693	134930893	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026780)	promoter-TSS (NM_026780)	-187.0	NM_026780	68592.0	Mm.29989	NM_026780	ENSMUSG00000028821	Syf2	1110018L13Rik|Cbpin|D4Bwg1551e|Gcipip|Ntc31|mp29|p29	SYF2 homolog, RNA splicing factor (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-49225802-4	chr13	49225687	49225887	+	945.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9761.0	NM_026738	68480.0	Mm.3336	NM_026738	ENSMUSG00000037960	Card19	1110007C09Rik|AI851695|Bincard	caspase recruitment domain family, member 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-3505730-4	chr5	3505619	3505819	+	986.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 5 of 7)	intron (NM_009873, intron 5 of 7)	-38114.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-32198879-2	chr19	32198779	32198979	+	615.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 5 of 9)	B2_Mm1a|SINE|B2	12134.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-75028414-1	chr5	75028314	75028514	+	625.0	f0_balb.idr	intron (NM_028850, intron 1 of 5)	intron (NM_028850, intron 1 of 5)	16227.0	NM_028850	74277.0	Mm.239814	NM_028850	ENSMUSG00000029229	Chic2	1700081B18Rik|4930502K01Rik|BTL	cysteine-rich hydrophobic domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-6455310-4	chr2	6455188	6455388	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	102552.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-109242666-2	chr13	109242566	109242766	+	571.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011056, intron 3 of 16)	intron (NM_011056, intron 3 of 16)	-82078.0	NR_030644	100124489.0		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191327666-4	chr1	191327579	191327779	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025864, intron 1 of 7)	intron (NM_025864, intron 1 of 7)	1714.0	NM_025864	66950.0	Mm.236300	NM_025864	ENSMUSG00000026627	Tmem206	2310028N02Rik|AI118576	transmembrane protein 206	protein-coding	3.49720589428002	4.08740833397463	3.32740677943815	3.74142469196987	2.04423122481237	3.72449153763204	3.60361364864619	2.53379023795872	-0.835581628080556	0.18751706878115	0.664995221281668
Merged-chr11-69404680-2	chr11	69404580	69404780	+	848.666626	f1_balb.idr|f1_c57bl6.idr	exon (NM_001017426, exon 11 of 23)	exon (NM_001017426, exon 11 of 23)	-6446.0	NM_025915	67020.0	Mm.390406	NM_025915	ENSMUSG00000045377	Tmem88	2600017H02Rik	transmembrane protein 88	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-193897022-4	chr1	193896901	193897101	+	911.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	325758.0	NR_040477	74942.0	Mm.60689	NR_040477	ENSMUSG00000103692	4930503O07Rik	-	RIKEN cDNA 4930503O07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-134697685-4	chr7	134697573	134697773	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033420, intron 1 of 51)	intron (NM_001033420, intron 1 of 51)	26986.0	NM_001033420	330662.0	Mm.436572	NM_001033420	ENSMUSG00000058325	Dock1	9130006G06Rik|AI854900|D630004B07Rik|b2b3190Clo	dedicator of cytokinesis 1	protein-coding	5.5849525810338	4.7480855914251	5.0200417438593	6.38410125322217	5.99898637464589	5.91738979432752	6.284528147316	6.27852322965597	0.596648257172478	0.0627306634023943	0.372329502694922
Merged-chr1-89235558-1	chr1	89235458	89235658	+	836.5	f0_balb.idr	Intergenic	Intergenic	165143.0	NM_133816	98402.0	Mm.170983	NM_133816	ENSMUSG00000036206	Sh3bp4	AI594717|AW227605|BOG25	SH3-domain binding protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-54999584-1	chr13	54999484	54999684	+	905.0	f1_balb.idr	intron (NM_153131, intron 8 of 15)	intron (NM_153131, intron 8 of 15)	21235.0	NM_001206390	212032.0	Mm.267479	NM_001033245	ENSMUSG00000025877	Hk3	HK III|HK-III	hexokinase 3	protein-coding	1.01311908896331	0.487790606486345	0.481186994925245	0.47611945965611	1.169909046877	1.34427359859323	0.48264005963949	0.477003005810884	1.77944878031785	0.34992959161034	0.850386723313101
Merged-chr6-134775011-1	chr6	134774911	134775111	+	622.0	f0_balb.idr	intron (NM_130447, intron 1 of 6)	intron (NM_130447, intron 1 of 6)	-17349.0	NR_151454	105242798.0	Mm.398227	NR_151454		1700055D16Rik	-	RIKEN cDNA 1700055D16 gene	ncRNA	1.18289075506325	1.67329928703743	1.45397434107604	1.01529431476448	2.23089753318333	1.30922698623999	2.00572285336529	2.12482462712847	1.9906036604097	0.0823419669936035	0.439214101951358
Merged-chr5-139717733-2	chr5	139717589	139717789	+	998.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_174850, intron 4 of 16)	intron (NM_174850, intron 4 of 16)	18644.0	NM_174850	231830.0	Mm.240510	NM_174850	ENSMUSG00000036718	Micall2	A930021H16Rik|JRAB|MICAL-L2|mFLJ00139	MICAL-like 2	protein-coding	1.32990999786741	0.779751583791338	2.03503141013023	1.72681702776509	1.08444990257101	0.783286827191036	0.767378699637399	1.29275168751277	-2.1131365833138	0.134495809131102	0.572362515235858
Merged-chr7-106571075-1	chr7	106570975	106571175	+	788.0	f0_balb.idr	Intergenic	Lx7|LINE|L1	73570.0	NM_001277179	434223.0	Mm.276443	NM_001277179		Gm1966	-	predicted gene 1966	protein-coding	1.1518996624659	0.789345971143023	0.760946309480722	0.737970145127332	2.87981653397282	0.79555070378605	1.79964142213501	2.32551691909179	4.25786063039027	0.00367372144028592	0.0526400993318676
Merged-chr14-64185585-3	chr14	64185488	64185688	+	815.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253715, intron 4 of 4)	intron (NM_001253715, intron 4 of 4)	81265.0	NM_028525	73382.0	Mm.481055	NM_028525	ENSMUSG00000021966	Prss52	1700049K14Rik|Tesp3	protease, serine 52	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-112281302-2	chr5	112281177	112281377	+	776.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001326590, intron 1 of 5)	intron (NM_001326590, intron 1 of 5)	4586.0	NM_009419	22022.0	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	-1.07142959718456	-1.18850429617302	-1.1989910054659	-1.20760510071201	-1.06773399208602	-0.856224159103991	-1.19661704434411	-1.20606318178146	1.43171530115239	0.641787244669509	1
Merged-chr6-108564225-3	chr6	108564127	108564327	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58940.0	NR_040757	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-155774595-4	chr4	155774512	155774712	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_147776)	promoter-TSS (NM_147776)	-51.0	NM_147776	246228.0	Mm.26515	NM_147776	ENSMUSG00000042116	Vwa1	4932416A11Rik|WARP	von Willebrand factor A domain containing 1	protein-coding	3.67478521519364	4.17722033180452	4.87848266376323	4.05150278729244	3.24970141258319	3.20336421499541	4.07354489951213	3.88989829285894	-0.84021835223721	0.0932602497798522	0.473260126816789
Merged-chr8-105544035-4	chr8	105543984	105544184	+	782.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013477, intron 1 of 7)	intron (NM_013477, intron 1 of 7)	21980.0	NM_013477	11972.0	Mm.17708	NM_013477	ENSMUSG00000013160	Atp6v0d1	AI267038|Ac39|Atp6d|P39|VATX|Vma6	ATPase, H+ transporting, lysosomal V0 subunit D1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-57696440-4	chr3	57696335	57696535	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3898.0	NM_001033349	242037.0	Mm.291091	NM_001033349	ENSMUSG00000074591	Ankub1	Gm410	ankrin repeat and ubiquitin domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-137957702-2	chr3	137957600	137957800	+	769.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011932, intron 3 of 8)	intron (NM_011932, intron 3 of 8)	23849.0	NM_001310753	26377.0	Mm.254835	NM_011932	ENSMUSG00000028159	Dapp1	Bam32	dual adaptor for phosphotyrosine and 3-phosphoinositides 1	protein-coding	-0.586435236052347	-0.721795182399913	-0.725197166501652	-0.727820537331119	-0.58250836073999	-0.721028069494423	-0.0331653387057211	-0.727362330099035	2.37906117220435	0.379674854874512	1
Merged-chr13-111467486-4	chr13	111467380	111467580	+	827.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028487, intron 2 of 12)	intron (NM_028487, intron 2 of 12)	22647.0	NM_028487	73274.0	Mm.57286	NM_028487	ENSMUSG00000032745	Gpbp1	1700034P14Rik|AU019836|D230035M11Rik|Gpbp|mGPBP	GC-rich promoter binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-24670100-7	chr16	24669999	24670199	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 6 of 12)	intron (NM_178665, intron 6 of 12)	-51756.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70863325-4	chr8	70863170	70863370	+	817.354187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6262.0	NM_032397	84036.0	Mm.32074	NM_032397	ENSMUSG00000002908	Kcnn1	AI854248|KCa2.1|SK1	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-69886404-2	chr8	69886315	69886515	+	930.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026818, intron 2 of 7)	intron (NM_026818, intron 2 of 7)	977.0	NM_026818	68709.0	Mm.334584	NM_026818	ENSMUSG00000044006	Cilp2	1110031K21Rik|AA407300|CLIP-2	cartilage intermediate layer protein 2	protein-coding	1.74476538999913	2.4136530771038	1.89387875383965	2.0701007681201	2.23628829580996	1.97666560109926	1.15826067689029	1.13665060531937	-0.859332094108039	0.435058660614226	0.907227265855066
Merged-chr3-15231788-3	chr3	15231688	15231888	+	889.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	100514.0	NM_001076679	751864.0	Mm.431296	NM_001076679	ENSMUSG00000078783	Gm9733	-	predicted gene 9733	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-65089818-4	chr5	65089739	65089939	+	639.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17729.0	NM_001347355	71778.0	Mm.10281	NM_175174	ENSMUSG00000054920	Klhl5	1300013C10Rik	kelch-like 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115549327-1	chr5	115549227	115549427	+	1000.0	f1_balb.idr	intron (NM_011223, intron 6 of 10)	intron (NM_011223, intron 6 of 10)	-10140.0	NM_007475	11837.0	Mm.5286	NM_007475	ENSMUSG00000067274	Rplp0	36B4|Arbp|L10E	ribosomal protein, large, P0	protein-coding	-0.505226017023241	-0.485538130172879	-0.49187959613821	-0.288127521061853	-0.503967399079507	-0.484122606762686	-0.490472142497435	0.777118724220976	3.16012074507231	0.211492648365072	1
Merged-chr11-98789029-4	chr11	98788916	98789116	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6500.0	NM_001361931	74026.0	Mm.258352	NM_028722	ENSMUSG00000052915	Msl1	2810017F12Rik|4121402D02Rik|4930463F05Rik|AA682082|Msl-1	male specific lethal 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64769473-4	chr5	64769372	64769572	+	909.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34051.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31458703-4	chr14	31458588	31458788	+	935.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22588.0	NM_011894	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84190479-2	chr8	84190356	84190556	+	848.7000119999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-11495.0	NR_029821	723819.0		NR_029821	ENSMUSG00000065483	Mir181c	Mirn181c|mir-181c	microRNA 181c	ncRNA	3.44740911919228	2.85983713476124	1.9068536919927	2.68322618883174	3.10697022022287	3.00206035019956	3.10716798772047	3.52553904428134	0.609924558786115	0.375377760647627	0.868350035427406
Merged-chr8-71707955-3	chr8	71707863	71708063	+	879.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_028715)	TTS (NM_028715)	-6163.0	NM_028189	72297.0	Mm.290837	NM_028189	ENSMUSG00000031803	B3gnt3	2210008L19Rik	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3	protein-coding	-0.609230134300407	-0.851968052161437	-0.420955775545194	-0.85926892493688	-0.723198266996692	-0.849357130719639	-0.856602635106975	-0.858907473630628	-1.95365333811989	0.493605159285368	1
Merged-chr19-10820314-4	chr19	10820193	10820393	+	947.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009852, intron 1 of 12)	L1MC4|LINE|L1	9765.0	NM_001037801	12511.0	Mm.290897	NM_009852	ENSMUSG00000024670	Cd6	-	CD6 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59393984-4	chr15	59393878	59394078	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164604, intron 2 of 4)	intron (NM_001164604, intron 2 of 4)	19780.0	NM_001164604	68501.0	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134087842-3	chr6	134087751	134087951	+	833.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 2 of 8)	intron (NM_001303102, intron 2 of 8)	52151.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-43675517-2	chr7	43675417	43675617	+	631.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_145582, exon 2 of 3)	exon (NM_145582, exon 2 of 3)	3486.0	NM_145582	233189.0	Mm.26514	NM_145582	ENSMUSG00000038888	Ctu1	Atpbd3|BC005752	cytosolic thiouridylase subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122217168-2	chr5	122217068	122217268	+	777.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359454, intron 3 of 7)	intron (NM_001359454, intron 3 of 7)	6881.0	NM_028752	74096.0	Mm.28804	NM_028752	ENSMUSG00000064267	Hvcn1	0610039P13Rik|AI450555|BTS|HV1|Vsop.|mVSOP	hydrogen voltage-gated channel 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-79063035-4	chr15	79062948	79063148	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144849)	promoter-TSS (NM_144849)	-189.0	NM_144849	223690.0	Mm.24262	NM_144849	ENSMUSG00000033055	Ankrd54	C730048E16Rik|EST1068184|EST475269|Liar	ankyrin repeat domain 54	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-5163123-4	chr18	5163045	5163245	+	739.81665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_153824, exon 3 of 3)	non-coding (NR_153824, exon 3 of 3)	2586.0	NR_153824	102637682.0	Mm.451914	NR_153824		Gm26682	Gm38715	predicted gene, 26682	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-40782195-4	chr9	40782076	40782276	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133733, intron 6 of 6)	intron (NM_133733, intron 6 of 6)	-19097.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	4.44072180096621	4.02532990067062	5.42855886098468	4.05757595623382	4.55146806553897	4.27771815671164	4.54291826657161	4.07818662769943	-0.310177396746198	0.479472643695535	0.928135972721369
Merged-chr7-24905136-4	chr7	24905057	24905257	+	856.854126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001130152, intron 1 of 28)	intron (NM_001130152, intron 1 of 28)	811.0	NM_001130152	16801.0	Mm.3181	NM_008488	ENSMUSG00000040940	Arhgef1	Lbcl2|Lsc	Rho guanine nucleotide exchange factor (GEF) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-9895251-4	chr13	9895137	9895337	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033269, intron 4 of 4)	intron (NM_033269, intron 4 of 4)	-129916.0	NM_144516	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-59581587-4	chr4	59581476	59581676	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024255)	promoter-TSS (NM_024255)	13.0	NM_024255	72479.0	Mm.272905	NM_024255	ENSMUSG00000028383	Hsdl2	2610207I16Rik	hydroxysteroid dehydrogenase like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-99914121-2	chr4	99914021	99914221	+	931.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15330.0	NM_028132	72157.0	Mm.217764	NM_028132	ENSMUSG00000025791	Pgm2	2610020G18Rik|AA407108|AI098105|Pgm-2|Pgm1	phosphoglucomutase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10882556-2	chr19	10882456	10882656	+	754.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134142)	promoter-TSS (NM_134142)	-813.0	NM_134142	68539.0	Mm.251890	NM_134142	ENSMUSG00000034659	Tmem109	1110006I15Rik|AA958958|C77652	transmembrane protein 109	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-53017128-4	chr3	53017036	53017236	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026225)	promoter-TSS (NM_026225)	87.0	NM_026225	67542.0	Mm.249548	NM_026225	ENSMUSG00000027742	Cog6	4933405E16Rik|AU018618|mKIAA1134	component of oligomeric golgi complex 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-28069837-2	chr5	28069737	28069937	+	572.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1575.0	NM_153526	231070.0	Mm.30221	NM_153526	ENSMUSG00000045294	Insig1	1810013C12Rik|Insig-1	insulin induced gene 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21357535-3	chr9	21357442	21357642	+	857.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10329.0	NM_001042708	16201.0	Mm.440026	NM_010561	ENSMUSG00000032178	Ilf3	MBII-26|MPHOSPH4|NF90|NFAR	interleukin enhancer binding factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41802059-4	chr19	41801922	41802122	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163495)	promoter-TSS (NM_001163495)	62.0	NM_001163495	71085.0	Mm.21646	NM_027667	ENSMUSG00000025154	Arhgap19	4933411B03Rik|AI120128|AW546831|mFLJ00368	Rho GTPase activating protein 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-81413093-2	chr17	81412993	81413193	+	562.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 7 of 8)	intron (NR_104580, intron 7 of 8)	325294.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-86677551-4	chr17	86677431	86677631	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-76333.0	NM_010137	13819.0	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-140217382-2	chr1	140217282	140217482	+	571.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2B|LINE|L1	-28875.0	NM_001081027	240776.0	Mm.483845	NM_001081027	ENSMUSG00000052726	Kcnt2	E330038N15Rik|Slick	potassium channel, subfamily T, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-80176914-3	chr11	80176816	80177016	+	946.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172133, intron 9 of 10)	intron (NM_172133, intron 9 of 10)	-6956.0	NM_028019	71956.0	Mm.22985	NM_028019	ENSMUSG00000020707	Rnf135	0610037N03Rik|2410006N06Rik	ring finger protein 135	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-119978051-4	chr4	119977967	119978167	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010657, intron 1 of 8)	intron (NM_010657, intron 1 of 8)	163389.0	NM_010657	16656.0	Mm.302758	NM_010657	ENSMUSG00000028634	Hivep3	2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3	human immunodeficiency virus type I enhancer binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-62120976-3	chr15	62120869	62121069	+	850.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132746, intron 2 of 6)	intron (NR_132746, intron 2 of 6)	81712.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-106684963-4	chr3	106684874	106685074	+	984.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039478)	promoter-TSS (NM_001039478)	-13.0	NM_001039478	321000.0	Mm.259638	NM_028081	ENSMUSG00000056260	Lrif1	2010012G17Rik|4933421E11Rik|AI450568	ligand dependent nuclear receptor interacting factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-11601476-2	chr16	11601376	11601576	+	701.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028964, intron 15 of 20)	RSINE1|SINE|B4	-178226.0	NR_126430	73761.0	Mm.39183	NR_126430		4833415N18Rik	-	RIKEN cDNA 4833415N18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-73142445-4	chr14	73142342	73142542	+	803.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001170694)	promoter-TSS (NM_001170694)	-68.0	NM_001170694	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-51584154-2	chr11	51584054	51584254	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028398)	promoter-TSS (NM_028398)	-603.0	NM_028398	72947.0	Mm.256875	NM_028398	ENSMUSG00000020359	Phykpl	2900006B13Rik|Agxt2l2	5-phosphohydroxy-L-lysine phospholyase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-79694655-4	chr15	79694568	79694768	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013818, intron 2 of 11)	intron (NM_013818, intron 2 of 11)	3772.0	NM_013818	14904.0	Mm.19080	NM_013818	ENSMUSG00000042535	Gtpbp1	AL022987|AW045683|C85212|GP-1|Gtpbp	GTP binding protein 1	protein-coding	3.76642144729219	2.93396978370703	3.41510744484735	3.52882541519549	2.366352386339	2.66673398077094	3.18379558292814	3.1764593059114	-0.941567029539622	0.130021864564608	0.564945315444048
Merged-chr5-139401960-2	chr5	139401860	139402060	+	562.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028469, intron 2 of 4)	intron (NM_028469, intron 2 of 4)	-4427.0	NM_177000	319772.0	Mm.440271	NM_177000	ENSMUSG00000044092	C130050O18Rik	-	RIKEN cDNA C130050O18 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-61387823-3	chr8	61387717	61387917	+	832.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021506, intron 11 of 11)	intron (NM_021506, intron 11 of 11)	-98945.0	NR_045475	69279.0	Mm.417857	NR_045475	ENSMUSG00000099419	1700001D01Rik	-	RIKEN cDNA 1700001D01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95230831-4	chr3	95230732	95230932	+	994.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038708, intron 1 of 4)	intron (NM_001038708, intron 1 of 4)	1889.0	NM_001038708	57912.0	Mm.28189	NM_172395	ENSMUSG00000046722	Cdc42se1	1300002M12Rik|AW558204|Cdcse1|SCIP1|Spec1	CDC42 small effector 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-15285107-4	chr3	15285060	15285260	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47142.0	NM_001076679	751864.0	Mm.431296	NM_001076679	ENSMUSG00000078783	Gm9733	-	predicted gene 9733	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-35060091-4	chr9	35060019	35060219	+	914.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009178, intron 1 of 10)	MTEa|LTR|ERVL-MaLR	-56609.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-135722294-4	chr1	135722181	135722381	+	922.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360782, intron 1 of 5)	B4A|SINE|B4	2218.0	NM_001360782	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118201624-3	chr11	118201501	118201701	+	874.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	11141.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-50110134-4	chr6	50110025	50110225	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164734)	promoter-TSS (NM_001164734)	-116.0	NM_019939	56524.0	Mm.41288	NM_008016	ENSMUSG00000038388	Mpp6	P55t|Pals2	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-32587655-2	chr6	32587555	32587755	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_175750, exon 1 of 32)	5' UTR (NM_175750, exon 1 of 32)	537.0	NM_175750	243743.0	Mm.444029	NM_175750	ENSMUSG00000029765	Plxna4	9330117B14|Plxa4|mKIAA1550	plexin A4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-43590044-3	chr17	43589968	43590168	+	733.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045444, exon 1 of 3)	non-coding (NR_045444, exon 1 of 3)	1441.0	NR_045445	73504.0	Mm.9277	NR_045444	ENSMUSG00000090307	1700071M16Rik	-	RIKEN cDNA 1700071M16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-110041629-3	chr6	110041537	110041737	+	947.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-603875.0	NM_001346640	108073.0	Mm.240881	NM_177328	ENSMUSG00000056755	Grm7	6330570A01Rik|BB176677|C030018L03|E130018M02Rik|Gpr1g|Gprc1g|SMN2|Tg(SMN2)89Ahmb|mGluR7	glutamate receptor, metabotropic 7	protein-coding	-0.048511301932533	-0.180892422331842	0.678363175243921	-0.0201766712238869	0.0851448500150368	-0.179744398157338	-0.184865637254219	-0.189242350873314	-2.27015560875394	0.311002030132651	1
Merged-chr7-45525482-4	chr7	45525434	45525634	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_148927)	promoter-TSS (NM_148927)	734.0	NM_008654	17872.0	Mm.4048	NM_008654	ENSMUSG00000040435	Ppp1r15a	9630030H21|Gadd34|Myd116	protein phosphatase 1, regulatory (inhibitor) subunit 15A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126696628-1	chr7	126696528	126696728	+	544.0	f1_c57bl6.idr	promoter-TSS (NM_029420)	promoter-TSS (NM_029420)	628.0	NM_175103	66162.0	Mm.358692	NM_175103	ENSMUSG00000047721	Bola2	1110025L05Rik|BolA-2	bolA-like 2 (E. coli)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-42490584-2	chr7	42490484	42490684	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001309388, intron 2 of 6)	intron (NM_001309388, intron 2 of 6)	15169.0	NM_001309389	434178.0	Mm.333810	NM_001309388	ENSMUSG00000092416	Zfp141	-	zinc finger protein 141	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101383932-4	chr7	101383827	101384027	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040112, intron 1 of 30)	intron (NM_001040112, intron 1 of 30)	-1599.0	NM_027180	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	4.11644741507211	3.22357965048648	3.22263924264862	4.13575038218689	4.1051738046913	2.9705959958273	4.89930178545568	2.4252613486387	0.266967510162105	0.674828403611527	0.99440487726309
Merged-chr14-103343415-4	chr14	103343262	103343462	+	711.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207215, intron 1 of 84)	intron (NM_207215, intron 1 of 84)	3438.0	NM_207215	105689.0	Mm.6478	NM_207215	ENSMUSG00000033004	Mycbp2	AU023734|AW107953|AW546647|C130061D10Rik|Pam|Phr1|R75243	MYC binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53064800-2	chr4	53064700	53064900	+	894.4285890000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 30 of 49)	ORR1D1|LTR|ERVL-MaLR	52920.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-98942207-2	chr13	98942107	98942307	+	890.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15823.0	NM_178716	238799.0	Mm.173286	NM_178716	ENSMUSG00000009470	Tnpo1	AU021749|D13Ertd688e|IPO2|Kpnb2|MIP|MIP1|TRN	transportin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-66434470-2	chr13	66434370	66434570	+	642.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290196, intron 1 of 3)	B3|SINE|B2	6648.0	NM_183119	76803.0	Mm.183391	NM_183119	ENSMUSG00000074832	2410141K09Rik	4930482J15Rik|Ayu21-35|Gt(pU21)35Imeg	RIKEN cDNA 2410141K09 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-173630790-4	chr1	173630690	173630890	+	913.3583369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175026)	promoter-TSS (NM_175026)	-69.0	NM_175026	236312.0	Mm.447	NM_175026	ENSMUSG00000043263	Ifi209	4930422C14|AI447904|Ifix|Pyhin-1|Pyhin1	interferon activated gene 209	protein-coding	3.76145483025378	3.0254044635727	3.74108774069955	3.7523242742455	3.23063098041724	1.67703148801882	1.90521493604601	3.39500685741211	-1.32477650951328	0.0645548673498191	0.379795340861293
Merged-chr2-168590461-3	chr2	168590419	168590619	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001136073)	promoter-TSS (NM_001136073)	-154.0	NM_001136073	18019.0	Mm.116802	NM_010899	ENSMUSG00000027544	Nfatc2	AI607462|NF-ATc2|NF-ATp|NFAT1|NFAT1-D|Nfatp	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-35397836-2	chr7	35397736	35397936	+	652.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_153799, intron 1 of 19)	intron (NR_153799, intron 1 of 19)	773.0	NM_028120	72140.0	Mm.133263	NM_028120	ENSMUSG00000023072	Cep89	2610507L03Rik|Ccdc123	centrosomal protein 89	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-156469445-3	chr1	156469343	156469543	+	828.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009230, intron 1 of 15)	intron (NM_009230, intron 1 of 15)	4885.0	NM_009230	20652.0	Mm.28099	NM_009230	ENSMUSG00000026600	Soat1	8430426K15Rik|ACAT-1|AW550831|Acact|ald|hid	sterol O-acyltransferase 1	protein-coding	3.17758825276213	2.57416763597998	2.61247560933659	3.45161019596294	1.65430169167247	2.44533120902035	2.36260795710237	2.76448254148878	-1.27072877046895	0.0976223020315009	0.485602147501637
Merged-chr10-36978647-3	chr10	36978586	36978786	+	729.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008229, intron 1 of 13)	RLTR31B2|LTR|ERVK	4142.0	NM_008229	15182.0	Mm.19806	NM_008229	ENSMUSG00000019777	Hdac2	D10Wsu179e|YAF1|Yy1bp|mRPD3	histone deacetylase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32450504-4	chr2	32450397	32450597	+	905.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_194335)	promoter-TSS (NM_194335)	40.0	NM_194335	71254.0	Mm.102341	NM_194335	ENSMUSG00000039164	Naif1	2310007O20Rik|4933440H19Rik	nuclear apoptosis inducing factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-85068577-3	chr6	85068495	85068695	+	874.8666380000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177077, intron 1 of 21)	ID4|SINE|ID	918.0	NM_177077	75914.0	Mm.159621	NM_177077	ENSMUSG00000033769	Exoc6b	4930569O18Rik|G430127E12Rik|Sec15b|Sec15l2|mKIAA0919	exocyst complex component 6B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-46423064-1	chr18	46422964	46423164	+	678.0	f0_c57.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	42752.0	NR_045438	72076.0	Mm.82766	NM_028086		Mospd4	2010013H21Rik	motile sperm domain containing 4	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-99062203-4	chr4	99062098	99062298	+	717.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026082, intron 11 of 47)	L1MB8|LINE|L1	31244.0	NM_013913	30924.0	Mm.28341	NM_013913	ENSMUSG00000028553	Angptl3	hypl	angiopoietin-like 3	protein-coding	1.50262752506021	1.04388004951358	1.31867127023141	1.27985441522225	1.10146092190127	1.05019634302629	0.822436004414998	1.69108335949621	-0.310975461291673	0.812004107361685	0.998431161219273
Merged-chr11-44390191-4	chr11	44390101	44390301	+	991.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9862.0	NM_001303244	16160.0	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	2.33604922845893	2.41752486441458	1.28648979597711	2.78161326339957	2.65962009716765	1.60033908979597	1.55272873273476	2.38295822992491	-0.372859712140218	0.707715382691249	0.998431161219273
Merged-chr1-184616964-2	chr1	184616864	184617064	+	608.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59273.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-152333671-2	chr2	152333571	152333771	+	733.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1032.0	NM_019705	24105.0	Mm.182145	NM_019705	ENSMUSG00000027466	Rbck1	AL033326|HOIL-1|HOIL-1L|UIP28|Ubce7ip3	RanBP-type and C3HC4-type zinc finger containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-12133361-2	chr18	12133261	12133461	+	674.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_024182, intron 1 of 12)	intron (NM_024182, intron 1 of 12)	4511.0	NM_024182	66878.0	Mm.28551	NM_024182	ENSMUSG00000024404	Riok3	1200013N13Rik|D18Ertd331e|E130306C24Rik|Sudd	RIO kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-65958256-4	chr3	65958149	65958349	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355432)	promoter-TSS (NM_001355432)	0.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180246382-4	chr1	180246277	180246477	+	990.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011183)	promoter-TSS (NM_011183)	-427.0	NM_011183	19165.0	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128297177-1	chr10	128297077	128297277	+	684.0	f1_balb.idr	exon (NM_031252, exon 3 of 4)	exon (NM_031252, exon 3 of 4)	907.0	NM_031252	83430.0	Mm.125482	NM_031252	ENSMUSG00000025383	Il23a	IL-23|p19	interleukin 23, alpha subunit p19	protein-coding	0.121674729392766	-0.307950594186583	-0.314467827832284	-0.319555170913275	-0.326835872357764	0.83959114269929	-0.313023076331614	-0.318662622695643	1.9628722728145	0.428911052755427	1
Merged-chr2-91933302-2	chr2	91933202	91933402	+	580.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_138306, exon 31 of 31)	3' UTR (NM_138306, exon 31 of 31)	-1005.0	NM_010784	17242.0	Mm.906	NM_010784	ENSMUSG00000027239	Mdk	MK|Mek	midkine	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85482060-2	chr12	85481960	85482160	+	587.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8170.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171058563-3	chr1	171058439	171058639	+	775.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010188, intron 2 of 4)	intron (NM_010188, intron 2 of 4)	855.0	NM_001356511	14131.0	Mm.22119	NM_010188	ENSMUSG00000059498	Fcgr3	CD16	Fc receptor, IgG, low affinity III	protein-coding	1.93320268516043	2.01342238424159	1.30687097197669	2.16758404623615	2.80126223244894	1.84189222742474	2.90270754091917	2.29532390598974	1.50854863899961	0.10175376261964	0.495873941474591
Merged-chr10-20839104-4	chr10	20839004	20839204	+	928.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-113443.0	NM_026203	52906.0	Mm.253280	NM_026203	ENSMUSG00000019986	Ahi1	1700015F03Rik|Ahi-1|D10Bwg0629e	Abelson helper integration site 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-155249742-2	chr2	155249641	155249841	+	660.5	f0_balb.idr|f1_balb.idr	intron (NR_111890, intron 3 of 3)	intron (NR_111890, intron 3 of 3)	13133.0	NM_001291108	67068.0	Mm.23693	NM_025947	ENSMUSG00000047459	Dynlrb1	2010012N15Rik|2010320M17Rik|9430076K19Rik|AV124457|DNLC2A|Dncl2a|km23-1	dynein light chain roadblock-type 1	protein-coding	1.29428137677482	0.683903653082979	0.664733157921717	0.649460475303244	2.28280227155825	1.88700411760004	0.924037164727759	0.891931433614971	2.82765133302383	0.0538134713733069	0.339817910282598
Merged-chr5-24828656-2	chr5	24828556	24828756	+	546.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_053075, intron 1 of 7)	Lx9|LINE|L1	13705.0	NM_053075	19744.0	Mm.319175	NM_053075	ENSMUSG00000028945	Rheb	Rheb1	Ras homolog enriched in brain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28987886-2	chr17	28987780	28987980	+	867.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357173, intron 5 of 13)	B2_Mm2|SINE|B2	20115.0	NM_134115	106504.0	Mm.439986	NM_134115	ENSMUSG00000024006	Stk38	5830476G13Rik|9530097A09Rik|AA617404|Ndr1	serine/threonine kinase 38	protein-coding	1.78663447776124	1.69088857022021	1.92288103137848	1.74845855087201	1.99810031197976	1.8603398565521	1.93687544770063	2.09313184039343	0.572487689822536	0.547021179383659	0.957629043069512
Merged-chr1-37430102-4	chr1	37429970	37430170	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356528)	promoter-TSS (NM_001356528)	33.0	NM_198006	76178.0	Mm.28085	NM_198006	ENSMUSG00000026112	Coa5	1700001A24Rik|6330578E17Rik|Pet191	cytochrome C oxidase assembly factor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141957931-4	chr4	141957815	141958015	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177868, intron 9 of 31)	intron (NM_177868, intron 9 of 31)	-25077.0	NR_040672	545691.0	Mm.332015	NR_040672	ENSMUSG00000085424	Fhad1os1	Gm13037	forkhead-associated (FHA) phosphopeptide binding domain 1, opposite strand 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-13669997-2	chr9	13669897	13670097	+	695.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173776, intron 1 of 3)	intron (NM_173776, intron 1 of 3)	7537.0	NM_173776	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-31072156-2	chr17	31072046	31072246	+	779.0	f0_balb.idr|f1_balb.idr	intron (NM_009593, intron 2 of 14)	intron (NM_009593, intron 2 of 14)	14452.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	1.76255146653725	0.65607560620779	1.19211545361644	0.631699610441154	0.956433628727338	0.897730107696491	1.65920423133994	0.633587113370909	-0.216523313983576	0.887572449540218	0.998431161219273
Merged-chr3-146135102-4	chr3	146135012	146135212	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134160, intron 8 of 11)	intron (NM_134160, intron 8 of 11)	13321.0	NM_134160	171166.0	Mm.114683	NM_134160	ENSMUSG00000036853	Mcoln3	6720490O21Rik|TRPML3|Va	mucolipin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117941051-5	chr10	117940894	117941094	+	983.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045342, intron 3 of 3)	intron (NR_045342, intron 3 of 3)	15535.0	NR_045342	71067.0	Mm.410793	NR_045342	ENSMUSG00000112500	4933411E08Rik	-	RIKEN cDNA 4933411E08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125147634-2	chr6	125147534	125147734	+	947.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039669, intron 1 of 9)	intron (NM_001039669, intron 1 of 9)	2410.0	NM_001302779	320678.0	Mm.129415	NM_178787	ENSMUSG00000038271	Iffo1	4733401N06Rik|A930037G23Rik|HOM-TES-103|Iffo	intermediate filament family orphan 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128573362-3	chr2	128573266	128573466	+	749.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18975.0	NM_001310641	241634.0	Mm.297682	NM_001310641	ENSMUSG00000074812	Spdye4c	Gm355|SpeedyB3|SpyB3	speedy/RINGO cell cycle regulator family, member E4C	protein-coding	-0.662826441749988	-1.00555184936033	-1.01675512286785	-1.01992432642343	-0.654846858003193	-1.00312405325568	-1.01421894731451	-1.01959449741028	0.0418081237259606	0.989738874530268	1
Merged-chr17-48300997-4	chr17	48300920	48301120	+	749.55835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360121, intron 1 of 4)	intron (NM_001360121, intron 1 of 4)	982.0	NM_001360121	328833.0	Mm.329104	NM_001033405	ENSMUSG00000071068	Treml2	AW049306|Gm750|Tlt2	triggering receptor expressed on myeloid cells-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-102784611-3	chr9	102784499	102784699	+	800.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44951.0	NR_033301	434510.0	Mm.387937	NM_001034892	ENSMUSG00000093812	Gm5627	EG434510	predicted gene 5627	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-80524454-4	chr2	80524339	80524539	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355411, intron 19 of 30)	intron (NM_001355411, intron 19 of 30)	56743.0	NM_001290745	50884.0	Mm.25203	NM_016965	ENSMUSG00000027002	Nckap1	C79304|H19|Hem-2|Hem2|Nap1|mKIAA0587|mh19|p125Nap1	NCK-associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-35749363-4	chr13	35749246	35749446	+	962.520874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001123386, intron 1 of 6)	Lx9|LINE|L1	7944.0	NM_001123386	12593.0	Mm.29002	NM_009881	ENSMUSG00000059288	Cdyl	AI325931	chromodomain protein, Y chromosome-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-147758868-4	chr5	147758802	147759002	+	989.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32914.0	NM_010228	14254.0	Mm.389712	NM_010228	ENSMUSG00000029648	Flt1	AI323757|Flt-1|VEGFR-1|VEGFR1|sFlt1	FMS-like tyrosine kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-142382336-1	chr7	142382236	142382436	+	554.0	f1_balb.idr	intron (NM_009983, intron 4 of 8)	intron (NM_009983, intron 4 of 8)	5534.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-111719942-4	chr4	111719835	111720035	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026470)	promoter-TSS (NM_026470)	-75.0	NM_026470	67946.0	Mm.275526	NM_026470	ENSMUSG00000034401	Spata6	1700062C23Rik|AI790763|Hash|KRP|Mash	spermatogenesis associated 6	protein-coding	5.63812741032636	5.50011942314725	5.11705610047683	5.59661417543115	3.8887310372608	4.30452058570355	4.42344007848493	5.47972694869937	-0.96124647166703	0.0107004361642616	0.114288278722976
Merged-chr6-124730021-4	chr6	124729917	124730117	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077705, intron 3 of 15)	intron (NM_001077705, intron 3 of 15)	3137.0	NM_013545	15170.0	Mm.271799	NM_013545	ENSMUSG00000004266	Ptpn6	70Z-SHP|Hcph|PTPTY-42|Ptp1C|SH-PTP1|SHP-1|hcp|me	protein tyrosine phosphatase, non-receptor type 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-117125664-2	chr4	117125553	117125753	+	613.75	f0_balb.idr|f1_balb.idr	promoter-TSS (NR_024078)	promoter-TSS (NR_024078)	72.0	NR_024078	78611.0	Mm.446227	NM_001033187		Btbd19	9530048O09Rik|BB115071	BTB (POZ) domain containing 19	ncRNA	1.99506070763961	1.59848246954644	1.70656428751576	2.27212991352098	2.01200503915472	1.41082131658527	1.14698291811757	1.91698382637455	-0.711109062838748	0.51019732773697	0.945041303754863
Merged-chr1-180403892-4	chr1	180403780	180403980	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081175, intron 2 of 7)	intron (NM_001081175, intron 2 of 7)	-73331.0	NR_003623	277333.0	Mm.389223	NM_199472		Gm5069	EG277333	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-149084347-1	chr3	149084247	149084447	+	653.0	f0_balb.idr	Intergenic	Intergenic	-129712.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-130079944-4	chr3	130079851	130080051	+	987.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19044.0	NM_207209	99683.0	Mm.192303	NM_207209	ENSMUSG00000001052	Sec24b	AI605202|SEC24	Sec24 related gene family, member B (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-32993140-4	chr17	32993077	32993277	+	977.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001045559)	promoter-TSS (NM_001045559)	38.0	NM_001045559	240067.0	Mm.246667	NM_199020	ENSMUSG00000053390	Zfp952	BC057593|C920016K16Rik	zinc finger protein 952	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-100754264-3	chr15	100754172	100754372	+	891.5888669999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-7475.0	NM_021530	59033.0	Mm.209856	NM_021530	ENSMUSG00000023032	Slc4a8	AW493845|C230026C11|NDCBE|kNBC-3	solute carrier family 4 (anion exchanger), member 8	protein-coding	-0.0642711944076485	0.416080929943634	-0.460540878077829	-0.464184467036152	-0.469356058611786	-0.454780414925886	-0.459501684851981	-0.463546991445757	-3.6702102906161	0.158940483388236	1
Merged-chr10-121374817-4	chr10	121374711	121374911	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029364, intron 3 of 13)	intron (NM_029364, intron 3 of 13)	9721.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-37720501-3	chr18	37720389	37720589	+	615.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033576)	promoter-TSS (NM_033576)	-65.0	NM_033576	93701.0	Mm.247203	NM_033576	ENSMUSG00000103585	Pcdhgb4	-	protocadherin gamma subfamily B, 4	protein-coding	-1.43172712806865	-1.3992492906874	-1.40907085678131	-1.41713858359971	-0.932192548427885	-1.39712091634321	-1.40684746950024	-1.41569446435649	2.19283191591698	0.528233640655333	1
Merged-chr10-83533744-7	chr10	83533701	83533901	+	809.287048	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153543, intron 1 of 22)	intron (NM_153543, intron 1 of 22)	339.0	NM_153543	216188.0	Mm.263138	NM_153543	ENSMUSG00000020256	Aldh1l2	D330038I09Rik|mtFDH	aldehyde dehydrogenase 1 family, member L2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81746054-2	chr15	81745954	81746154	+	995.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081016, intron 1 of 22)	intron (NM_001081016, intron 1 of 22)	1206.0	NM_001081016	20286.0	Mm.432075	NM_001081016	ENSMUSG00000022390	Zc3h7b	Gm627|Scrg3|Zc2h7b|mKIAA1031	zinc finger CCCH type containing 7B	protein-coding	-0.586435236052347	-0.721795182399913	-0.725197166501652	-0.727820537331119	-0.58250836073999	-0.721028069494423	-0.0331653387057211	-0.727362330099035	2.37906117220435	0.379674854874512	1
Merged-chr2-33154937-2	chr2	33154837	33155037	+	801.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290572, intron 12 of 17)	intron (NM_001290572, intron 12 of 17)	-23501.0	NM_001355201	99326.0	Mm.41290	NM_178888	ENSMUSG00000038860	Garnl3	AW120551	GTPase activating RANGAP domain-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-47312911-3	chr4	47312814	47313014	+	907.138855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009928, exon 40 of 40)	3' UTR (NM_009928, exon 40 of 40)	-40308.0	NM_001312868	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-64306326-4	chr15	64306233	64306433	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 3 of 28)	intron (NM_001276461, intron 3 of 28)	6340.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-15862273-3	chr16	15862109	15862309	+	936.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359003, intron 3 of 3)	intron (NM_001359003, intron 3 of 3)	1160.0	NM_029354	72083.0	Mm.22351	NM_029354	ENSMUSG00000022671	Mzt2	2410018G20Rik|2610001E06Rik|Fam128|Fam128b	mitotic spindle organizing protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-39412271-4	chr10	39412160	39412360	+	981.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122892, intron 2 of 12)	intron (NM_001122892, intron 2 of 12)	42461.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97489025-4	chr6	97488927	97489127	+	958.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	-1207.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	1.32264310495474	1.33046476061263	1.12300737704544	1.7114803902148	1.78940810615298	1.1593956806778	1.44241999962673	1.10374111801596	0.0743086260828524	0.950638992863987	0.998431161219273
Merged-chr16-34920331-2	chr16	34920231	34920431	+	581.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_139300, intron 14 of 31)	intron (NM_139300, intron 14 of 31)	18998.0	NR_040536	76649.0	Mm.420532	NR_040536	ENSMUSG00000100593	1700119H24Rik	-	RIKEN cDNA 1700119H24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-55282485-3	chr18	55282370	55282570	+	921.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-289879.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	3.33026148686323	3.29465717555657	3.04099973409466	2.61835487748757	1.31747812118336	1.19179023365143	1.14632556625773	1.1050370562562	-5.56981198670728	4.42235401733576e-06	0.00022870432543101
Merged-chr10-80388314-2	chr10	80388214	80388414	+	569.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198615)	promoter-TSS (NM_198615)	-663.0	NM_198615	237400.0	Mm.268389	NM_198615	ENSMUSG00000048696	Mex3d	BC059858|Rkhd1	mex3 RNA binding family member D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167920572-2	chr2	167920472	167920672	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11755.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-128223299-2	chr8	128223199	128223399	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA4|LINE|L1	54926.0	NR_105822	102465212.0		NR_105822	ENSMUSG00000099326	Mir21c	Gm28013|mmu-mir-21c	microRNA 21c	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-88230816-2	chr1	88230716	88230916	+	966.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001281466, intron 5 of 41)	intron (NM_001281466, intron 5 of 41)	3796.0	NM_001281466	100040766.0	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	Heatr7b1	maestro heat-like repeat family member 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-62880438-3	chr13	62880363	62880563	+	657.727783	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019395, intron 1 of 6)	intron (NM_019395, intron 1 of 6)	7819.0	NM_019395	14121.0	Mm.423078	NM_019395	ENSMUSG00000069805	Fbp1	Fbp-2|Fbp2|Fbp3	fructose bisphosphatase 1	protein-coding	2.57843512109015	2.44525326965764	2.44559953579243	1.52762784181234	1.05141504438576	1.64040451472647	1.11418160473717	1.85235823790628	-2.36848614423428	0.0313466310061527	0.243970543828462
Merged-chr10-79774734-2	chr10	79774634	79774834	+	685.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 3 of 4)	intron (NR_038088, intron 3 of 4)	-2540.0	NM_031380	83554.0	Mm.251710	NM_031380	ENSMUSG00000020325	Fstl3	E030038F23Rik|Flrg	follistatin-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-102267476-8	chr7	102267352	102267552	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009287)	promoter-TSS (NM_009287)	-372.0	NM_009287	20866.0	Mm.645	NM_009287	ENSMUSG00000030987	Stim1	SIM	stromal interaction molecule 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65524153-4	chr9	65524036	65524236	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55951.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-122598009-6	chr6	122597803	122598003	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001134391, intron 2 of 7)	ID_B1|SINE|B4	4541.0	NM_031159	11810.0	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116593416-2	chr11	116593333	116593533	+	542.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009591)	promoter-TSS (NM_009591)	-254.0	NR_033223	11298.0	Mm.42233	NM_009591	ENSMUSG00000020804	Aanat	AA-NAT|Nat-2|Nat4|Snat	arylalkylamine N-acetyltransferase	protein-coding	-0.982069446400524	-0.964505746809917	-0.976079197034032	-0.334273321189768	-0.981513632833359	-0.961852029344417	-0.973979371539827	-0.806130501807937	-1.95874923424748	0.528966339532119	1
Merged-chr9-47703862-4	chr9	47703753	47703953	+	928.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	114355.0	NR_046048	100038460.0	Mm.447649	NR_046048		Gm10677	-	predicted gene 10677	ncRNA	4.38526598307761	4.68551007604813	4.32260971525761	5.38781024625274	4.46127245999545	4.61220265830589	3.67889222850806	4.96505636608941	-0.324448634330503	0.441378476282089	0.910532833293071
Merged-chr11-97989397-2	chr11	97989297	97989497	+	954.166626	f1_balb.idr|f1_c57bl6.idr	TTS (NR_152188)	TTS (NR_152188)	-2951.0	NM_001163608	72324.0	Mm.39617	NM_028199	ENSMUSG00000017417	Plxdc1	2410003I07Rik|AI848450|Tem7	plexin domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84661708-4	chr8	84661616	84661816	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010499, exon 1 of 1)	3' UTR (NM_010499, exon 1 of 1)	1136.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-77904029-2	chr10	77903929	77904129	+	578.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1493.0	NM_145152	237387.0	Mm.133301	NM_145152	ENSMUSG00000051652	Lrrc3	1300011L04Rik|C21orf102	leucine rich repeat containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-12938424-2	chr13	12938324	12938524	+	686.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A1-int|LTR|ERVL-MaLR	66906.0	NM_031191	18811.0	Mm.88796	NM_031191	ENSMUSG00000079092	Prl2c2	Ghd2|MRP-1|PLF-1|Plf|Plf1	prolactin family 2, subfamily c, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165112306-4	chr2	165112143	165112343	+	993.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_174988, exon 12 of 12)	exon (NM_174988, exon 12 of 12)	-21493.0	NR_033448	72211.0	Mm.482899	NR_033448	ENSMUSG00000078935	1700025C18Rik	-	RIKEN cDNA 1700025C18 gene	ncRNA	1.31917545029732	0.787618686853727	0.98852901238652	1.61385505416382	2.02020131277501	1.02679229795356	0.995499500857818	0.968180466314812	0.488313775962733	0.715068071708129	0.998431161219273
Merged-chr1-88698493-4	chr1	88698372	88698572	+	955.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177305, exon 1 of 1)	3' UTR (NM_177305, exon 1 of 1)	3719.0	NM_177305	320982.0	Mm.27968	NM_177305	ENSMUSG00000049866	Arl4c	A630084M22Rik|Arl7|LAK	ADP-ribosylation factor-like 4C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44895948-7	chr7	44895845	44896045	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027376)	promoter-TSS (NM_027376)	-134.0	NM_027376	70300.0	Mm.276298	NM_027376	ENSMUSG00000011658	Fuz	2600013E07Rik|b2b1273Clo	fuzzy planar cell polarity protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118171410-2	chr11	118171310	118171510	+	830.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001112700, intron 10 of 12)	intron (NM_001112700, intron 10 of 12)	41332.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-19895344-4	chr4	19895238	19895438	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175406, intron 2 of 7)	intron (NM_175406, intron 2 of 7)	27228.0	NM_175406	242341.0	Mm.19298	NM_175406	ENSMUSG00000028238	Atp6v0d2	1620401A02Rik|AI324824|V-ATPase	ATPase, H+ transporting, lysosomal V0 subunit D2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-29715796-1	chr11	29715696	29715896	+	560.0	f0_balb.idr	intron (NM_194054, intron 3 of 8)	intron (NM_194054, intron 3 of 8)	-2767.0	NM_024226	68585.0	Mm.192580	NM_024226	ENSMUSG00000020458	Rtn4	1110020G17Rik|AA407876|AA409940|AA960376|ASY|C130026I10Rik|NOGO|NSP-CL|NgA|Nogo-A|Nogo-B|Nogo-C|mKIAA0886|mKIAA4153	reticulon 4	protein-coding	-0.369421755444154	-0.641374009290437	-0.645347539005701	-0.648420801864181	-0.652775087352273	-0.640479841063662	0.170198846463605	-0.6478834323802	1.83037016334557	0.51990333278248	1
Merged-chr11-117121333-4	chr11	117121128	117121328	+	932.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166507, intron 2 of 16)	intron (NM_001166507, intron 2 of 16)	6056.0	NM_001166506	74136.0	Mm.272312	NM_028777	ENSMUSG00000020823	Sec14l1	1200017E04Rik|2810012L19Rik|Naa-35	SEC14-like lipid binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-148585305-4	chr2	148585208	148585408	+	848.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	-87307.0	NM_019761	56488.0	Mm.34663	NM_019761	ENSMUSG00000036992	Nxt1	1110001N02Rik	NTF2-related export protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-113770830-2	chr9	113770730	113770930	+	718.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114347, intron 4 of 39)	intron (NM_001114347, intron 4 of 39)	-22500.0	NM_001286603	76499.0	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-102001930-2	chr5	102001830	102002030	+	557.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 3 of 66)	B3A|SINE|B2	67991.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-49055868-3	chr13	49055792	49055992	+	777.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290313, intron 23 of 29)	intron (NM_001290313, intron 23 of 29)	87780.0	NR_015601	68128.0	Mm.426304	NR_015601		Fam120aos	C030044B11Rik	family with sequence similarity 120A, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-57528674-4	chr16	57528624	57528824	+	913.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 4 of 4)	intron (NM_001040397, intron 4 of 4)	-20518.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-121282000-1	chr14	121281900	121282100	+	950.0	f1_c57bl6.idr	intron (NM_134082, intron 26 of 26)	intron (NM_134082, intron 26 of 26)	33294.0	NR_155502	320268.0	Mm.435974	NR_155502		B930095G15Rik	-	RIKEN cDNA B930095G15 gene	ncRNA	0.426671016288043	0.893010498688038	1.54165314858942	0.442677160376327	0.770103575975625	0.466793606159028	1.47108669077497	0.444335918177092	-0.218713668764204	0.899180978606309	0.998431161219273
Merged-chr2-15486899-2	chr2	15486799	15486999	+	622.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17B|LTR|ERVK	-39580.0	NM_001310455	102635496.0		NM_001310455	ENSMUSG00000075520	Malrd1	Diet1|Gm13318|Gm13364	MAM and LDL receptor class A domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-75951827-4	chr10	75951741	75951941	+	893.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2673.0	NM_198635	333669.0	Mm.31077	NM_198635	ENSMUSG00000033255	Gm5134	EG333669	predicted gene 5134	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-58075480-4	chr15	58075392	58075592	+	822.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009572, intron 1 of 3)	intron (NM_009572, intron 1 of 3)	1016.0	NM_001042438	22770.0	Mm.244931	NM_009572	ENSMUSG00000022361	Zhx1	-	zinc fingers and homeoboxes 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-99168198-4	chr11	99168100	99168300	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13123.0	NM_007719	12775.0	Mm.2932	NM_007719	ENSMUSG00000037944	Ccr7	CC-CKR-7|CCR-7|CD197|Cdw197|Cmkbr7|EBI1|Ebi1h	chemokine (C-C motif) receptor 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-77918416-2	chr2	77918316	77918516	+	594.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030560, intron 12 of 20)	intron (NM_030560, intron 12 of 20)	27940.0	NM_001290740	80744.0	Mm.288151	NM_030560	ENSMUSG00000027014	Cwc22	AA684037|AI173004|AL022752|B230213M24|mKIAA1604	CWC22 spliceosome-associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-86527177-3	chr6	86527066	86527266	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011865)	promoter-TSS (NM_011865)	-164.0	NR_037960	72012.0	Mm.349174	NR_037960	ENSMUSG00000097048	1600020E01Rik	-	RIKEN cDNA 1600020E01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-26790282-2	chr10	26790182	26790382	+	676.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_176837, intron 1 of 14)	intron (NM_176837, intron 1 of 14)	17770.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-55465444-2	chr11	55465344	55465544	+	917.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4236.0	NM_009720	11927.0	Mm.217759	NM_009720	ENSMUSG00000018585	Atox1	AI256639|Atx1	antioxidant 1 copper chaperone	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-25821050-2	chr15	25820950	25821150	+	567.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6C|LTR|ERVK	-22248.0	NM_001034851	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-105716011-1	chr4	105715911	105716111	+	770.0	f0_balb.idr	Intergenic	L2a|LINE|L2	-525202.0	NR_151521	105244641.0	Mm.404914	NR_151521		Gm12724	-	predicted gene 12724	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-117167445-4	chr4	117167343	117167543	+	968.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290662, intron 10 of 19)	intron (NM_001290662, intron 10 of 19)	-11311.0	NM_009098	20116.0	Mm.260904	NM_009098	ENSMUSG00000047675	Rps8	-	ribosomal protein S8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-51876008-2	chr6	51875908	51876108	+	565.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_018773, intron 10 of 12)	intron (NM_018773, intron 10 of 12)	136541.0	NM_018773	54353.0	Mm.221479	NM_018773	ENSMUSG00000059182	Skap2	2610021A10Rik|AA960083|BB137539|RA70|SKAP-HOM|Saps|Scap2|mSKAP55R	src family associated phosphoprotein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-85080668-2	chr8	85080568	85080768	+	985.1666869999999	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026399)	promoter-TSS (NM_026399)	78.0	NM_026399	67836.0	Mm.334680	NM_026399	ENSMUSG00000005150	Wdr83	1500041N16Rik|Morg1	WD repeat domain containing 83	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56469017-4	chr17	56468929	56469129	+	899.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252455, intron 1 of 27)	intron (NM_001252455, intron 1 of 27)	-6808.0	NM_001252456	19280.0	Mm.258771	NM_011218	ENSMUSG00000013236	Ptprs	AL022616|PTP|PTP-NU3|PTPNU-3|PTPsigma|Ptpt9|R-PTP-S|RPTPsigma	protein tyrosine phosphatase, receptor type, S	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-98839792-2	chr15	98839692	98839892	+	572.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001033276, exon 49 of 55)	exon (NM_001033276, exon 49 of 55)	-8284.0	NM_016781	19082.0	Mm.6670	NM_016781	ENSMUSG00000067713	Prkag1	AA571379|BB036179|Prkaac	protein kinase, AMP-activated, gamma 1 non-catalytic subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-59440924-4	chr14	59440817	59441017	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001320725)	promoter-TSS (NM_001320725)	-37.0	NM_001320721	239122.0	Mm.205022	NM_001081024	ENSMUSG00000071350	Setdb2	Clld8|Gm293|KMT1F	SET domain, bifurcated 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-99460007-4	chr10	99459928	99460128	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-149143.0	NR_038019	100504202.0	Mm.403801	NR_038019	ENSMUSG00000111962	Gm20110	-	predicted gene, 20110	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-58066974-3	chr13	58066867	58067067	+	978.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195075, intron 6 of 16)	intron (NM_001195075, intron 6 of 16)	35461.0	NM_001195075	100503085.0	Mm.379256	NM_001195075	ENSMUSG00000014164	Klhl3	7530408C15Rik|AI430941|EG627648	kelch-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-107027422-3	chr13	107027312	107027512	+	775.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015471, intron 2 of 3)	ORR1E|LTR|ERVL-MaLR	4842.0	NR_015471	100040322.0	Mm.133867	NR_015471	ENSMUSG00000071181	3830408C21Rik	-	RIKEN cDNA 3830408C21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-77949734-4	chr18	77949633	77949833	+	725.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195633, intron 2 of 43)	intron (NM_001195633, intron 2 of 43)	11266.0	NM_001195633	100502841.0	Mm.297782	NM_001195633	ENSMUSG00000039840	Epg5	4732475F16|5430411K18Rik|AI661957|AW456499|mKIAA1632	ectopic P-granules autophagy protein 5 homolog (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-20916260-2	chr11	20916160	20916360	+	803.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-85152.0	NM_173752	216551.0	Mm.76694	NM_173752	ENSMUSG00000042363	Lgalsl	1110067D22Rik|A530071M23|Grpa|Hspc159|Lgalsla	lectin, galactoside binding-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-63935746-2	chr7	63935598	63935798	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021366, intron 1 of 1)	intron (NM_021366, intron 1 of 1)	3217.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	1.51460765090417	0.591612971416117	1.47278043213039	0.559870915299301	0.539302762118158	0.595517647639411	2.18483895091115	0.800675386175957	0.4582988680699	0.773997108567014	0.998431161219273
Merged-chr8-105827341-4	chr8	105827273	105827473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024445)	promoter-TSS (NM_024445)	-23.0	NM_145824	74334.0	Mm.4206	NM_145824	ENSMUSG00000037415	Ranbp10	4432417N03Rik	RAN binding protein 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120555062-4	chr11	120554957	120555157	+	903.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3925.0	NM_026814	68701.0	Mm.46477	NM_026814	ENSMUSG00000025129	Ppp1r27	1110033I14Rik|Dysfip1|toonin	protein phosphatase 1, regulatory subunit 27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-54524740-2	chr11	54524640	54524840	+	890.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252494, intron 1 of 28)	L2a|LINE|L2	1895.0	NM_001252496	192786.0	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-43432232-3	chr16	43432124	43432324	+	782.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181058, intron 2 of 6)	intron (NM_181058, intron 2 of 6)	-12028.0	NR_046026	626693.0	Mm.447083	NR_046026	ENSMUSG00000085499	Gm15713	-	predicted gene 15713	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27689125-3	chr2	27689130	27689330	+	796.133362	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011305, intron 1 of 9)	intron (NM_011305, intron 1 of 9)	12029.0	NM_011305	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70792826-3	chr14	70792726	70792926	+	803.283325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18445.0	NM_010071	13449.0	Mm.243323	NM_010071	ENSMUSG00000022102	Dok2	DokR|Frip|dok-R	docking protein 2	protein-coding	2.61477269490514	1.99672691178974	2.92052624034192	2.05445407073071	3.21022823497217	1.78371380039322	2.42658727772643	2.76962096889249	0.410063709979542	0.621174955161368	0.9795220948076
Merged-chr19-8821154-2	chr19	8821054	8821254	+	658.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081196, intron 1 of 13)	intron (NM_001081196, intron 1 of 13)	1753.0	NM_001081196	68693.0	Mm.476519	NM_001081196	ENSMUSG00000071659	Hnrnpul2	1110031M08Rik|AI465155|Hnrpul2	heterogeneous nuclear ribonucleoprotein U-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-192136713-4	chr1	192136621	192136821	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033536)	promoter-TSS (NR_033536)	-177.0	NR_033536	100038712.0	Mm.474908	NR_033536	ENSMUSG00000097316	Gm10516	-	predicted gene 10516	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-92183259-6	chr2	92183157	92183357	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346704)	promoter-TSS (NM_001346704)	-925.0	NM_138755	192285.0	Mm.330408	NM_138755	ENSMUSG00000058318	Phf21a	80kDa|Bhc|Bhc80|D030065N23Rik|PFTF1	PHD finger protein 21A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-122132268-4	chr2	122132096	122132296	+	908.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026251, intron 2 of 17)	RLTR20C1_MM|LTR|ERVK	-13810.0	NM_145531	214585.0	Mm.222303	NM_145531	ENSMUSG00000033396	Spg11	6030465E24Rik|A330015I11|C530005A01Rik	SPG11, spatacsin vesicle trafficking associated	protein-coding	1.78106937410445	1.48898696561759	1.43817239547521	1.104578118732	1.3393654272306	0.945152071707069	1.68855069819061	1.26795206099009	-0.515413224318295	0.674361281946874	0.99440487726309
Merged-chr14-76331403-2	chr14	76331303	76331503	+	969.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	79941.0	NR_152108	72893.0	Mm.233565	NR_152108		2900040C04Rik	-	RIKEN cDNA 2900040C04 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-11610131-2	chr17	11610031	11610231	+	556.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016694, intron 6 of 11)	intron (NM_016694, intron 6 of 11)	273058.0	NR_045808	52027.0	Mm.442257	NR_045808		D17Ertd648e	-	DNA segment, Chr 17, ERATO Doi 648, expressed	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-89077943-2	chr1	89077843	89078043	+	549.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133816, intron 1 of 5)	intron (NM_133816, intron 1 of 5)	7528.0	NM_133816	98402.0	Mm.170983	NM_133816	ENSMUSG00000036206	Sh3bp4	AI594717|AW227605|BOG25	SH3-domain binding protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-83078673-4	chr17	83078525	83078725	+	742.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045094)	promoter-TSS (NR_045094)	-400.0	NR_045094	100503434.0	Mm.187281	NR_045094		Gm19689	-	predicted gene, 19689	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100714736-3	chr11	100714646	100714846	+	884.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_029307)	TTS (NM_029307)	896.0	NM_029307	75482.0	Mm.46175	NM_029307	ENSMUSG00000017832	Hspb9	1700007H20Rik	heat shock protein, alpha-crystallin-related, B9	protein-coding	2.13602641083088	2.89526697147698	2.31826701222707	2.09837843914877	2.15398960996614	3.33683246627452	3.00173060674839	2.63272710543455	0.906082847573163	0.240999559680657	0.737630795165438
Merged-chr13-89389542-2	chr13	89389442	89389642	+	709.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-151094.0	NM_013500	12950.0	Mm.266790	NM_013500	ENSMUSG00000021613	Hapln1	BB099155|CLP|Crtl1|Crtl1l|LP|LP-1	hyaluronan and proteoglycan link protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-150496834-3	chr1	150496739	150496939	+	731.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-30674.0	NM_021400	96875.0	Mm.174256	NM_021400	ENSMUSG00000006014	Prg4	CACP|DOL54|JCAP|MSF|SZP|lubricin	proteoglycan 4 (megakaryocyte stimulating factor, articular superficial zone protein)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-69913646-2	chr8	69913665	69913865	+	683.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286450, intron 9 of 12)	intron (NM_001286450, intron 9 of 12)	-11207.0	NM_023312	67184.0	Mm.21162	NM_023312	ENSMUSG00000036199	Ndufa13	2700054G14Rik|AU022060|CDA016|CGI-39|GRIM-19|Grim19	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-120567175-2	chr9	120567075	120567275	+	576.333374	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_178676, exon 11 of 11)	3' UTR (NM_178676, exon 11 of 11)	-4342.0	NM_025974	67115.0	Mm.289810	NM_025974	ENSMUSG00000025794	Rpl14	3100001N19Rik|AA407502|AL022816|CAG-ISL-7|CTG-B33|L14	ribosomal protein L14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-106433140-3	chr8	106433037	106433237	+	748.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17798.0	NM_011764	22751.0	Mm.295582	NM_011764	ENSMUSG00000031907	Zfp90	6430515L01Rik|KRAB17|NK10|Zfp64|Zfp83|mKIAA1954	zinc finger protein 90	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-45151089-2	chr19	45150963	45151163	+	802.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_021901, exon 1 of 3)	exon (NM_021901, exon 1 of 3)	348.0	NM_021901	21908.0	Mm.391203	NM_021901	ENSMUSG00000025215	Tlx1	Hox-11|Hox11|Tlx-1	T cell leukemia, homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31440906-4	chr14	31440784	31440984	+	922.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-4784.0	NM_011894	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-60947730-3	chr19	60947631	60947831	+	796.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018869, intron 1 of 15)	ORR1B2|LTR|ERVL-MaLR	57982.0	NM_018869	14773.0	Mm.279400	NM_018869	ENSMUSG00000003228	Grk5	Gprk5	G protein-coupled receptor kinase 5	protein-coding	-0.734697168562934	-1.28094420828655	-1.29131886204401	-1.29984091153697	-1.31008363841169	-1.2786959775384	-1.28897026783925	-1.29831546875223	-2.42902550944018	0.482518537989684	1
Merged-chr1-180976363-2	chr1	180976263	180976463	+	938.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33845.0	NM_144794	208795.0	Mm.185518	NM_144794	ENSMUSG00000026519	Tmem63a	BC014795|Tmem64a	transmembrane protein 63a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-109095588-3	chr9	109095509	109095709	+	909.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_172775, exon 1 of 38)	5' UTR (NM_172775, exon 1 of 38)	173.0	NM_172775	235611.0	Mm.53862	NM_172775	ENSMUSG00000053646	Plxnb1	2900002G15Rik|AU042020|mKIAA0407	plexin B1	protein-coding	-0.893986561169655	-0.875744574464236	0.191235023404903	-0.88803707909448	-0.893095256885496	-0.872421296127899	-0.88349549973802	-0.887416687878218	-3.49744126941707	0.244297073838425	1
Merged-chr13-67729134-4	chr13	67729043	67729243	+	993.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145622)	promoter-TSS (NM_145622)	30.0	NM_145622	235907.0	Mm.440123	NM_145622	ENSMUSG00000071281	Zfp65	KRAB5|Zfp71-rs1|pz114	zinc finger protein 65	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-59241592-2	chr2	59241492	59241692	+	614.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 2 of 20)	intron (NM_175464, intron 2 of 20)	80742.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-71002670-4	chr2	71002591	71002791	+	976.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145524, intron 2 of 9)	intron (NM_145524, intron 2 of 9)	15683.0	NM_001110512	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-12152604-2	chr6	12152504	12152704	+	674.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	-43024.0	NR_003631	625347.0	Mm.389084	NM_001039041	ENSMUSG00000057223	Gm6578	EG625347	mitochondrial ribosomal protein L32 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-99656985-2	chr4	99656885	99657085	+	804.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_010425, exon 1 of 1)	exon (NM_010425, exon 1 of 1)	686.0	NM_010425	15221.0	Mm.4758	NM_010425	ENSMUSG00000067261	Foxd3	CWH3|Genesis|Hfh2	forkhead box D3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-124056558-4	chr9	124056404	124056604	+	944.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34533.0	NM_009914	12771.0	Mm.57050	NM_009914	ENSMUSG00000035448	Ccr3	CC-CKR3|CKR3|Cmkbr1l2|Cmkbr3	chemokine (C-C motif) receptor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-138995427-2	chr1	138995327	138995527	+	718.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_181347, intron 1 of 20)	intron (NM_181347, intron 1 of 20)	17770.0	NR_108103	78229.0	Mm.437838	NR_108103	ENSMUSG00000104900	4930596I21Rik	-	RIKEN cDNA 4930596I21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115648043-2	chr11	115647943	115648143	+	629.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001313936, intron 4 of 5)	intron (NM_001313936, intron 4 of 5)	-19748.0	NM_001252395	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-9087444-3	chr5	9087354	9087554	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-13283.0	NM_001081029	652925.0	Mm.439954	NM_001081029	ENSMUSG00000079659	Tmem243	4930420K17Rik|E030031F02Rik	transmembrane protein 243, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-70536059-4	chr4	70535940	70536140	+	933.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1112.0	NM_172694	230316.0	Mm.251188	NM_172694	ENSMUSG00000039270	Megf9	4933405H16Rik|9630025C07|Egfl5|mKIAA0818	multiple EGF-like-domains 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21436315-6	chr9	21436252	21436452	+	923.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357721, intron 1 of 19)	intron (NM_001357721, intron 1 of 19)	11444.0	NM_001357719	13430.0	Mm.433257	NM_007871	ENSMUSG00000033335	Dnm2	Dyn2|Udnm|b2b2159Clo	dynamin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-84993362-1	chr1	84993262	84993462	+	540.0	f1_balb.idr	Intergenic	Intergenic	-58279.0	NM_027921	71781.0	Mm.158754	NM_027921	ENSMUSG00000026220	Slc16a14	1110004H10Rik	solute carrier family 16 (monocarboxylic acid transporters), member 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-139609178-3	chr4	139609071	139609271	+	705.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205173, intron 5 of 8)	intron (NM_001205173, intron 5 of 8)	-13723.0	NM_175438	212647.0	Mm.273571	NM_175438	ENSMUSG00000028737	Aldh4a1	A930035F14Rik|Ahd-1|Ahd1|Aldh4|Aldh5a1|E330022C09|P5cd|P5cdh|P5cdhl|P5cdhs|Ssdh1	aldehyde dehydrogenase 4 family, member A1	protein-coding	1.48239032477791	1.91613659324122	0.918542707986673	1.85041043167198	0.65278608896653	0.9596107281387	0.688516086149107	0.674078861526753	-4.27941699245846	0.00527529190667881	0.0695526948311345
Merged-chr13-5443748-1	chr13	5443648	5443848	+	704.0	f0_balb.idr	Intergenic	Intergenic	414344.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-70215018-4	chr10	70214902	70215102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304739, intron 1 of 2)	intron (NM_001304739, intron 1 of 2)	10338.0	NM_001304739	69563.0	Mm.64672	NM_001304739	ENSMUSG00000019933	Mrln	2310015B20Rik|Linc-RAM|Mln	myoregulin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-98959732-2	chr13	98959625	98959825	+	565.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	24840.0	NM_027064	69382.0	Mm.45466	NM_027064	ENSMUSG00000045022	1700024P04Rik	H2bl1|Subh2bv	RIKEN cDNA 1700024P04 gene	protein-coding	0.264110399122854	0.0183764072228536	0.0130973393437879	0.628464903838929	0.146956430697794	0.0195670397153882	0.583284220841686	0.00973821551913806	-0.319521052442353	0.879470474599167	1
Merged-chr2-140794251-8	chr2	140794157	140794357	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013802, intron 3 of 18)	RMER17C2|LTR|ERVK	-122781.0	NM_178382	71436.0	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3919722-2	chr12	3919622	3919822	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27978.0	NM_153743	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-65778063-1	chr11	65777963	65778163	+	630.0	f1_c57bl6.idr	intron (NM_001316368, intron 1 of 10)	intron (NM_001316368, intron 1 of 10)	10296.0	NM_009157	26398.0	Mm.412922	NM_009157	ENSMUSG00000033352	Map2k4	JNKK1|MEK4|MKK4|PRKMK4|Sek1|Serk1	mitogen-activated protein kinase kinase 4	protein-coding	-0.200076261875046	-0.18667636258906	0.124081242584966	0.320725988602425	-0.199243014368223	-0.185682424604648	-0.190108568523253	0.327442799079133	-0.598062547428855	0.803949923098631	1
Merged-chr3-100685685-8	chr3	100685560	100685760	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010763)	promoter-TSS (NM_010763)	-187.0	NM_010763	17156.0	Mm.271617	NM_010763	ENSMUSG00000008763	Man1a2	AI428775|AI528764|AI854422|Man1b|PCR2	mannosidase, alpha, class 1A, member 2	protein-coding	4.00164425350099	3.79566064551273	4.00095746907648	3.77503349833851	3.67727944548808	2.18710379437152	3.77293691863305	3.51062809549903	-0.692607888567194	0.205047087396745	0.692299163936211
Merged-chr2-161108580-4	chr2	161108500	161108700	+	961.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_126509, intron 1 of 35)	CpG	486.0	NM_173368	71389.0	Mm.122738	NM_173368	ENSMUSG00000057133	Chd6	5430439G14Rik|6330406J24Rik|CHD-6	chromodomain helicase DNA binding protein 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-122185371-2	chr9	122185271	122185471	+	556.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271873, intron 12 of 12)	MLT1L|LTR|ERVL-MaLR	67912.0	NM_001357776	20623.0	Mm.257989	NM_133741	ENSMUSG00000038145	Snrk	2010012F07Rik|AI448042|AW547029|E030034B15|R74830|mKIAA0096	SNF related kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-142910354-4	chr5	142910225	142910425	+	898.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3571.0	NM_007393	11461.0	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-110672286-1	chr8	110672186	110672386	+	553.0	f0_balb.idr	intron (NR_151674, intron 13 of 18)	intron (NR_151674, intron 13 of 18)	-49190.0	NM_198625	244654.0	Mm.490385	NM_198625	ENSMUSG00000033763	Mtss1l	ABBA	metastasis suppressor 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-10987582-3	chr16	10987493	10987693	+	722.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019980, intron 1 of 3)	intron (NM_019980, intron 1 of 3)	5528.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-21037688-3	chr19	21037597	21037797	+	918.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-67013.0	NR_126458	75354.0	Mm.243873	NR_126458		4930554I06Rik	-	RIKEN cDNA 4930554I06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-116682447-4	chr6	116682343	116682543	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8607.0	NM_178045	213391.0	Mm.257931	NM_178045	ENSMUSG00000042129	Rassf4	3830411C14Rik|AD037|AI586137	Ras association (RalGDS/AF-6) domain family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-76533653-5	chr12	76533629	76533829	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_039597)	promoter-TSS (NR_039597)	169.0	NM_153804	263406.0	Mm.291854	NM_153804	ENSMUSG00000052609	Plekhg3	BC030417	pleckstrin homology domain containing, family G (with RhoGef domain) member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-78536968-4	chr14	78536881	78537081	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164503)	promoter-TSS (NM_001164503)	-121.0	NM_001164503	219181.0	Mm.89413	NM_001164503	ENSMUSG00000022016	Akap11	6330501D17Rik|AKAP220|Gm80|PRKA11|mKIAA0629	A kinase (PRKA) anchor protein 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95665147-13	chr3	95665115	95665315	+	908.487183	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6494.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-136029572-3	chr4	136029464	136029664	+	996.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-7915.0	NM_013736	27224.0	Mm.27663	NM_013736	ENSMUSG00000028668	Eloa	110kDa|AA408125|Tceb3|Tceb3a	elongin A	protein-coding	3.29545732852136	3.41116524835781	2.90554138920548	3.79064044643885	4.47305306320591	4.57354624723541	3.92833374956885	4.44328413834518	1.38238218355732	0.00356032041153753	0.0512190938820472
Merged-chr11-80475163-2	chr11	80475063	80475263	+	778.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1860.0	NM_009871	12569.0	Mm.142275	NM_009871	ENSMUSG00000048895	Cdk5r1	Cdk5r|D11Bwg0379e|p25|p35	cyclin-dependent kinase 5, regulatory subunit 1 (p35)	protein-coding	-0.271964087151066	-0.511419870411797	-0.514732441415278	-0.231483213073516	-0.520853546561946	-0.510670791079771	-0.514003313899331	-0.00816159251618986	0.139376811502451	0.957902574303007	1
Merged-chr5-76853754-4	chr5	76853720	76853920	+	895.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163793, intron 4 of 8)	intron (NM_001163793, intron 4 of 8)	13221.0	NM_001163793	320827.0	Mm.101504	NM_001163793	ENSMUSG00000036377	C530008M17Rik	2810489J07Rik|4930529A19Rik|4931405B09Rik|Kiaa1211|mKIAA1211	RIKEN cDNA C530008M17 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-35724720-4	chr15	35724632	35724832	+	975.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177151, intron 34 of 61)	intron (NM_177151, intron 34 of 61)	-63685.0	NR_030606	100124469.0		NR_030606	ENSMUSG00000077890	Mir875	Mirn875|mir-875|mmu-mir-875	microRNA 875	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-118766228-4	chr7	118766112	118766312	+	922.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027815, intron 8 of 30)	intron (NM_027815, intron 8 of 30)	25941.0	NM_027815	71517.0	Mm.213298	NM_027815	ENSMUSG00000030982	9030624J02Rik	2610029J22Rik	RIKEN cDNA 9030624J02 gene	protein-coding	4.24387342264755	3.32165770429304	4.56489344286874	3.67244538353282	4.68970601382677	3.67575693368103	4.08766030332372	3.34010708594949	0.0209256855153124	0.967605947874838	0.998431161219273
Merged-chr6-97442813-4	chr6	97442719	97442919	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	B1_Mur1|SINE|Alu	16467.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-50836132-3	chr6	50836041	50836241	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60026.0	NR_045984	319981.0	Mm.131454	NR_045984	ENSMUSG00000107667	C530044C16Rik	-	RIKEN cDNA C530044C16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-24802543-4	chr13	24802472	24802672	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_024473, exon 1 of 5)	5' UTR (NM_024473, exon 1 of 5)	915.0	NM_024473	79555.0	Mm.266668	NM_024473	ENSMUSG00000019132	BC005537	8030460C05Rik|C78201	cDNA sequence BC005537	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-40799400-2	chr9	40799322	40799522	+	749.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1851.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	0.761933670573368	0.636027659160232	1.43892446681586	1.2952465877123	1.02383616075067	1.17359302741859	0.62817965426941	0.800495202063833	-0.750893935373866	0.615766229508037	0.977352076822579
Merged-chr13-28860408-1	chr13	28860308	28860508	+	549.0	f0_balb.idr	intron (NR_045054, intron 2 of 7)	intron (NR_045054, intron 2 of 7)	25014.0	NR_045054	72518.0	Mm.37454	NR_045053		2610307P16Rik	AI666457	RIKEN cDNA 2610307P16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126810617-2	chr7	126810517	126810717	+	654.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-6268.0	NM_026884	68952.0	Mm.440393	NM_026884	ENSMUSG00000058966	Fam57b	1500016O10Rik|A330104J06Rik|AI413816|AW060769	family with sequence similarity 57, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-7232254-2	chr10	7232154	7232354	+	672.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-20017.0	NM_172546	215748.0	Mm.37984	NM_172546	ENSMUSG00000015202	Cnksr3	6820402C05|BC024086|Magi1	Cnksr family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134790215-3	chr6	134790097	134790297	+	729.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130447, intron 1 of 6)	intron (NM_130447, intron 1 of 6)	-2163.0	NR_151454	105242798.0	Mm.398227	NR_151454		1700055D16Rik	-	RIKEN cDNA 1700055D16 gene	ncRNA	3.72213103598138	4.21089011169879	2.44758624177159	3.44838297275408	3.85693756530283	4.48670790601691	2.01923221001254	3.46657145293399	0.176219899273226	0.792692337618004	0.998431161219273
Merged-chr11-3163141-3	chr11	3163068	3163268	+	862.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030207, intron 9 of 32)	intron (NM_030207, intron 9 of 32)	30295.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-136680013-1	chr2	136679913	136680113	+	875.25	f0_balb.idr	Intergenic	Intergenic	-33437.0	NM_011428	20614.0	Mm.45953	NM_011428	ENSMUSG00000027273	Snap25	Bdr|GENA70|SNAP-25|SUP|sp	synaptosomal-associated protein 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-152029392-4	chr2	152029281	152029481	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29515.0	NM_001164820	69698.0	Mm.258262	NM_027172	ENSMUSG00000027463	Slc52a3	2310046K01Rik|RFT2	solute carrier protein family 52, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-105506630-3	chr5	105506535	105506735	+	866.1333619999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC-int|LTR|ERVL-MaLR	-12836.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	0.504089856134412	0.625611716252449	0.588840232950803	1.14362636232712	1.26747149420229	0.633559341341682	2.06846338433899	3.58907694146888	4.48927265352239	0.0354108973086994	0.266425551364825
Merged-chr1-34484634-4	chr1	34484533	34484733	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13779.0	NM_009355	21755.0	Mm.10725	NM_009355	ENSMUSG00000026125	Prss39	Tesp1	protease, serine 39	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-49076509-4	chr11	49076411	49076611	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271677)	promoter-TSS (NM_001271677)	-76.0	NM_001271677	15953.0	Mm.24769	NM_008330	ENSMUSG00000078920	Ifi47	47kDa|IRG-47|Ifggc1|Igrd|Iigp4|Iipg4|Irgd	interferon gamma inducible protein 47	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-182959922-2	chr1	182959822	182960022	+	891.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016928, intron 1 of 3)	intron (NM_016928, intron 1 of 3)	5134.0	NM_016928	53791.0	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-4400711-2	chr11	4400611	4400811	+	864.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029458, intron 10 of 10)	ORR1G|LTR|ERVL-MaLR	40371.0	NM_029458	75828.0	Mm.159592	NM_029458	ENSMUSG00000020419	Hormad2	4930529M09Rik	HORMA domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-22780873-2	chr8	22780773	22780973	+	707.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008872, intron 13 of 13)	intron (NM_008872, intron 13 of 13)	23151.0	NM_008872	18791.0	Mm.154660	NM_008872	ENSMUSG00000031538	Plat	AU020998|AW212668|D8Ertd2e|tPA	plasminogen activator, tissue	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80172793-3	chr7	80172690	80172890	+	851.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	-14051.0	NM_013659	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-142938557-3	chr5	142938464	142938664	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21791.0	NM_007984	14086.0	Mm.289707	NM_007984	ENSMUSG00000029581	Fscn1	AI663989|Fan1|fascin-1	fascin actin-bundling protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-34514896-2	chr19	34514796	34514996	+	567.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111100, intron 3 of 9)	Lx8|LINE|L1	12578.0	NM_001111100	16889.0	Mm.157545	NM_021460	ENSMUSG00000024781	Lipa	AA960673|Lal|Lip-1|Lip1	lysosomal acid lipase A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30965785-4	chr2	30965681	30965881	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144884, intron 2 of 4)	URR1A|DNA|hAT-Charlie	2137.0	NM_144884	30931.0	Mm.154994	NM_144884	ENSMUSG00000026849	Tor1a	DQ2|Dyt1|torsinA	torsin family 1, member A (torsin A)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-118871683-2	chr10	118871583	118871783	+	620.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR31D_MM|LTR|ERVK	-2780.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-61590116-1	chr9	61590016	61590216	+	542.0	f0_balb.idr	Intergenic	Intergenic	217750.0	NM_001083927	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-14769227-6	chr9	14769110	14769310	+	896.14447	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029306, intron 1 of 3)	intron (NM_029306, intron 1 of 3)	1820.0	NM_029306	69325.0	Mm.440453	NM_029306	ENSMUSG00000031927	1700012B09Rik	1700007P19Rik	RIKEN cDNA 1700012B09 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-37262280-2	chr10	37262180	37262380	+	596.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28B|LTR|ERVL	-123354.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78273885-1	chr15	78273785	78273985	+	720.0	f1_c57bl6.idr	Intergenic	Intergenic	10964.0	NR_106137	102465776.0		NR_106137	ENSMUSG00000098996	Mir7676-1	Gm27600|mmu-mir-7676-1	microRNA 7676-1	ncRNA	-1.84436392554074	-1.52091821270385	-1.82290882857571	-1.83054882630441	-1.84220491470818	-1.81159244170985	-1.82080331928423	-1.82918127036376	-1.56828060379516	0.655578384384393	1
Merged-chr16-32324029-9	chr16	32323982	32324182	+	862.5277710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8170.0	NM_177633	224111.0	Mm.31275	NM_177633	ENSMUSG00000053774	Ubxn7	A630090P18|AI196514|Ubxd7|mKIAA0794	UBX domain protein 7	protein-coding	1.82157039702306	1.51447854175275	1.98337771423294	1.04877529057361	1.51226864838284	1.83428482838685	2.097770083415	1.26195674485332	0.222626825257956	0.844691882150731	0.998431161219273
Merged-chr11-86473855-2	chr11	86473755	86473955	+	920.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10802.0	NM_029788	76892.0	Mm.262707	NM_029788	ENSMUSG00000020521	Rnft1	0610013E23Rik|AV007605	ring finger protein, transmembrane 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19508563-6	chr7	19508449	19508649	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177692)	promoter-TSS (NM_177692)	-121.0	NR_138583	67091.0	Mm.44213	NM_025960	ENSMUSG00000002043	Trappc6a	1810073E21Rik|4930519D19Rik|AI480686|TRS33|mhyp	trafficking protein particle complex 6A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-109759929-4	chr13	109759840	109760040	+	887.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011056, intron 5 of 16)	intron (NM_011056, intron 5 of 16)	-143869.0	NR_035442	100316683.0		NR_035442	ENSMUSG00000084651	Mir1904	Mirn1904|mmu-mir-1904	microRNA 1904	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-20128947-2	chr13	20128847	20129047	+	575.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	38440.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-87074576-8	chr15	87074496	87074696	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-469703.0	NM_001252310	106014.0	Mm.244319	NM_134096	ENSMUSG00000054863	Fam19a5	TAFA5|Tafa-5|Tara-5	family with sequence similarity 19, member A5	protein-coding	-2.18292257394068	-2.15545247547656	-2.03304972317742	-2.17058342868585	-2.18099422382073	-2.1536522739386	-2.16187909550322	-2.16936197735154	-0.683654500252594	0.846597994014493	1
Merged-chr9-121697567-2	chr9	121697467	121697667	+	781.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164562, intron 1 of 6)	intron (NM_001164562, intron 1 of 6)	7462.0	NM_178677	215474.0	Mm.31421	NM_178677	ENSMUSG00000061536	Sec22c	4932412K21|5930407I15Rik|C530046H07|Sec22l3	SEC22 homolog C, vesicle trafficking protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-38250378-4	chr18	38250370	38250570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015475)	promoter-TSS (NR_015475)	95.0	NR_027904	73516.0	Mm.48776	NR_015475	ENSMUSG00000097080	1700086O06Rik	-	RIKEN cDNA 1700086O06 gene	ncRNA	4.39733544357911	4.47984181157103	4.93761572527338	5.11070933009028	4.19936670171366	4.62505455614022	5.00812349479848	4.23846087805847	-0.264317019876336	0.490232974062726	0.934345795476137
Merged-chr2-91727853-2	chr2	91727753	91727953	+	598.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2285.0	NM_172669	228361.0	Mm.436667	NM_172669	ENSMUSG00000040506	Ambra1	2310079H06Rik|A130023A14|AA474864|AV021921|D030051N19Rik|mKIAA1736	autophagy/beclin 1 regulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-46327495-2	chr17	46327395	46327595	+	607.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347396, intron 1 of 19)	intron (NM_001347396, intron 1 of 19)	528.0	NM_001347396	224814.0	Mm.76543	NM_145140	ENSMUSG00000032842	Abcc10	Mrp7|mFLJ00002	ATP-binding cassette, sub-family C (CFTR/MRP), member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-8598596-2	chr4	8598507	8598707	+	561.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021518, intron 6 of 7)	intron (NM_021518, intron 6 of 7)	62963.0	NM_021518	59021.0	Mm.397471	NM_021518	ENSMUSG00000047187	Rab2a	9330148M11Rik|C80220|Rab2	RAB2A, member RAS oncogene family	protein-coding	-1.58994551673671	-1.55912852307891	-1.56844783632235	-1.57610299769523	-1.18549093183599	-1.55710898902261	-1.56633814807757	-1.57473272746952	1.78703309985663	0.610309988231842	1
Merged-chr10-127535576-2	chr10	127535479	127535679	+	957.5	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-1020.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	-0.395413422427837	-0.385251048117703	-0.388605278126776	-0.114880745537588	-0.148557775679561	-0.384491626853422	0.0358497920369517	-0.239821403077278	1.55168038966328	0.521859453640647	1
Merged-chr1-24550705-3	chr1	24550605	24550805	+	906.4722289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007733, intron 4 of 50)	intron (NM_007733, intron 4 of 50)	36732.0	NM_007733	12823.0	Mm.329196	NM_007733	ENSMUSG00000026141	Col19a1	-	collagen, type XIX, alpha 1	protein-coding	2.65474668262112	3.11088881789423	3.11391210750806	3.3761042910366	3.0754739072809	3.34809713225317	3.77231551116062	3.6639175287871	0.664231134884179	0.253836355519337	0.751694505775946
Merged-chr10-43758385-4	chr10	43758282	43758482	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040581, intron 1 of 3)	intron (NR_040581, intron 1 of 3)	12224.0	NR_040581	69443.0	Mm.484042	NR_040581	ENSMUSG00000111422	1700027J07Rik	-	RIKEN cDNA 1700027J07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-84678222-2	chr7	84678122	84678322	+	636.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360577, intron 1 of 7)	intron (NM_001360577, intron 1 of 7)	1174.0	NM_022985	65098.0	Mm.209349	NM_022985	ENSMUSG00000030629	Zfand6	3110005P07Rik|Awp1|Za20d3	zinc finger, AN1-type domain 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-18050073-2	chr3	18049973	18050173	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4252.0	NM_021560	59058.0	Mm.149938	NM_021560	ENSMUSG00000025128	Bhlhe22	Beta3|Beta3a|Bhlhb5	basic helix-loop-helix family, member e22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150035504-4	chr4	150035399	150035599	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26476.0	NM_173371	100198.0	Mm.22183	NM_173371	ENSMUSG00000028980	H6pd	AI785303|G6pd1|Gpd-1|Gpd1	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119676945-2	chr11	119676845	119677045	+	910.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028898, intron 3 of 33)	intron (NM_028898, intron 3 of 33)	74040.0	NM_028898	74370.0	Mm.209933	NM_028898	ENSMUSG00000025583	Rptor	4932417H02Rik|Rap|Raptor|mKIAA1303	regulatory associated protein of MTOR, complex 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-102241844-4	chr7	102241750	102241950	+	802.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019566, intron 1 of 1)	intron (NM_019566, intron 1 of 1)	8268.0	NM_019566	56212.0	Mm.259795	NM_019566	ENSMUSG00000073982	Rhog	2810426G09Rik|Arhg|Sid10750	ras homolog family member G	protein-coding	-0.986120736994583	-0.969371152505656	-0.528398005185418	-0.982677690072504	-0.985609359348878	-0.966813441431418	-0.649143994241476	-0.982314641938362	-0.515951406040895	0.871389805080857	1
Merged-chr13-24793078-2	chr13	24792978	24793178	+	662.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-8579.0	NM_024473	79555.0	Mm.266668	NM_024473	ENSMUSG00000019132	BC005537	8030460C05Rik|C78201	cDNA sequence BC005537	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-109776337-2	chr8	109776237	109776437	+	821.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-2246.0	NM_009677	11765.0	Mm.37210	NM_009677	ENSMUSG00000031731	Ap1g1	AA409002|AU041323|AW551707|Adtg|D8Ertd374e	adaptor protein complex AP-1, gamma 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45722268-2	chr7	45722168	45722368	+	600.099976	f1_balb.idr|f1_c57bl6.idr	exon (NM_001033170, exon 1 of 5)	exon (NM_001033170, exon 1 of 5)	1048.0	NM_001033170	73813.0	Mm.322591	NM_001033170	ENSMUSG00000054161	Fam83e	4930403C10Rik	family with sequence similarity 83, member E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-140195593-2	chr2	140195493	140195693	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027093, intron 8 of 10)	intron (NM_027093, intron 8 of 10)	24947.0	NM_027093	69487.0	Mm.287921	NM_027093	ENSMUSG00000027384	Ndufaf5	2310003L22Rik	NADH dehydrogenase (ubiquinone) complex I, assembly factor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126908265-2	chr8	126908199	126908399	+	686.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37622.0	NM_024214	67952.0	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-3160864-4	chr17	3160760	3160960	+	977.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134123, intron 4 of 19)	CT-rich|Low_complexity|Low_complexity	45888.0	NM_134123	106583.0	Mm.124373	NM_134123	ENSMUSG00000046201	Scaf8	A630086M08Rik|A930036P18Rik|AA408306|AI447644|AI448652|AU015035|Rbm16|mKIAA1116	SR-related CTD-associated factor 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-79532151-1	chr11	79532051	79532251	+	543.0	f1_c57bl6.idr	intron (NM_010897, intron 36 of 57)	intron (NM_010897, intron 36 of 57)	-1542.0	NM_010161	14017.0	Mm.439665	NM_010161	ENSMUSG00000078771	Evi2a	AW491894|Evi-2|Evi2	ecotropic viral integration site 2a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-115774738-2	chr6	115774638	115774838	+	567.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_106120)	promoter-TSS (NR_106120)	181.0	NM_025958	67088.0	Mm.277683	NM_025958	ENSMUSG00000030319	Cand2	2210404G23Rik|Tp120b|mKIAA0667	cullin-associated and neddylation-dissociated 2 (putative)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4855173-4	chr19	4855091	4855291	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019861)	promoter-TSS (NM_019861)	62.0	NM_019861	56464.0	Mm.29561	NM_019861	ENSMUSG00000083282	Ctsf	AI481912	cathepsin F	protein-coding	1.38307326189671	1.9304360353081	1.62227481996231	1.57978891474076	1.51809263618757	1.68788312537736	2.2132270583831	1.11548725954401	0.234159074663677	0.835955307522654	0.998431161219273
Merged-chr7-128320059-2	chr7	128319959	128320159	+	606.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21928.0	NM_145590	233913.0	Mm.220880	NM_145590	ENSMUSG00000030780	BC017158	-	cDNA sequence BC017158	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-113688871-2	chr7	113688771	113688971	+	814.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-77127.0	NM_145584	233744.0	Mm.334160	NM_145584	ENSMUSG00000038156	Spon1	AI666765|AW455831|BC020531|D330035F22Rik|FSP	spondin 1, (f-spondin) extracellular matrix protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-31088483-7	chr6	31088441	31088641	+	830.9404910000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25448.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-119488009-4	chr13	119487931	119488131	+	936.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039244)	promoter-TSS (NM_001039244)	-8.0	NM_001039244	633640.0	Mm.46679	NM_001039244	ENSMUSG00000074634	Tmem267	EG633640|Gm7120	transmembrane protein 267	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-55369176-2	chr13	55369076	55369276	+	877.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016758)	promoter-TSS (NM_016758)	-556.0	NM_001360714	51791.0	Mm.1426	NM_016758	ENSMUSG00000052087	Rgs14	RPIP1	regulator of G-protein signaling 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-88517939-2	chr15	88517839	88518039	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-82363.0	NM_027306	70073.0	Mm.45306	NM_027306	ENSMUSG00000054117	Zdhhc25	1700030J15Rik	zinc finger, DHHC domain containing 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35263713-4	chr17	35263628	35263828	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001267808, intron 6 of 11)	CpG-6316	605.0	NM_001267808	14980.0	Mm.439675	NM_001267808		H2-L	H-2L	histocompatibility 2, D region locus L	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124917316-4	chr6	124917215	124917415	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152158, intron 1 of 1)	(CGGGG)n|Simple_repeat|Simple_repeat	452.0	NR_152158	442825.0	Mm.446713	NR_152158	ENSMUSG00000055818	A230083G16Rik	-	RIKEN cDNA A230083G16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-83749500-1	chr8	83749400	83749600	+	1000.0	f1_c57bl6.idr	Intergenic	Intergenic	-8189.0	NM_001163031	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	4.90544353390704	4.5282371826062	4.20390863317943	4.91108817603836	4.19133143412246	4.31032272285815	4.41658756384864	5.15124595589734	-0.122082236433133	0.757245964516692	0.998431161219273
Merged-chr16-10452711-4	chr16	10452606	10452806	+	998.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5344.0	NM_001013778	383103.0	Mm.325732	NM_001013778	ENSMUSG00000050908	Tvp23a	Fam18a	trans-golgi network vesicle protein 23A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-60474375-3	chr3	60474303	60474503	+	797.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253713, intron 2 of 9)	intron (NM_001253713, intron 2 of 9)	1573.0	NM_001253713	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-79059500-4	chr8	79059392	79059592	+	974.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001294279, intron 1 of 14)	intron (NM_001294279, intron 1 of 14)	31055.0	NM_178267	622675.0	Mm.48724	NM_178267	ENSMUSG00000071064	Zfp827	2810449M09Rik|D630040G17Rik|Znf827	zinc finger protein 827	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45801575-4	chr7	45801483	45801683	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005511, intron 15 of 15)	intron (NM_001005511, intron 15 of 15)	12733.0	NM_011181	19158.0	Mm.272130	NM_011181	ENSMUSG00000003269	Cyth2	ARNO|CLM2|Pscd2	cytohesin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-80158954-2	chr12	80158854	80159054	+	825.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26110.0	NR_033514	69548.0	Mm.269712	NR_033514		2310015A10Rik	5330419I17Rik	RIKEN cDNA 2310015A10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-3007544-2	chr9	3007443	3007643	+	868.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	GSAT_MM|Satellite|Satellite	31200.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-23167293-2	chr16	23167193	23167393	+	863.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7987.0	NR_155420	105246089.0	Mm.390905	NR_155420		C730014E05Rik	-	RIKEN cDNA C730014E05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106420497-2	chr11	106420397	106420597	+	590.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023913, intron 8 of 21)	intron (NM_023913, intron 8 of 21)	-37716.0	NM_010494	15896.0	Mm.394	NM_010494	ENSMUSG00000001029	Icam2	CD102|Icam-2|Ly-60	intercellular adhesion molecule 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-11765499-3	chr11	11765308	11765508	+	663.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025597, intron 7 of 7)	intron (NM_001025597, intron 7 of 7)	43554.0	NM_021891	60530.0	Mm.236114	NM_021891	ENSMUSG00000035455	Fignl1	-	fidgetin-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-55377970-3	chr9	55377925	55378125	+	881.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172923, intron 2 of 10)	intron (NM_172923, intron 2 of 10)	51112.0	NM_001357568	244886.0	Mm.24361	NM_172923	ENSMUSG00000032313	Tmem266	9630029F15|AI118078|HVRP1	transmembrane protein 266	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-55528597-4	chr13	55528509	55528709	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013739)	promoter-TSS (NM_013739)	-71.0	NM_013739	27261.0	Mm.33910	NM_013739	ENSMUSG00000035711	Dok3	AI450713|Dokl	docking protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-111459757-2	chr9	111459657	111459857	+	640.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172928, intron 1 of 4)	MTEa|LTR|ERVL-MaLR	20676.0	NM_172928	245038.0	Mm.26361	NM_172928	ENSMUSG00000032500	Dclk3	BC056929|C730036H08|Dcamkl3	doublecortin-like kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125427563-2	chr6	125427463	125427663	+	786.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-47059.0	NM_198604	213522.0	Mm.333396	NM_198604	ENSMUSG00000038167	Plekhg6	BC026778|Gm155	pleckstrin homology domain containing, family G (with RhoGef domain) member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-29198749-4	chr6	29198666	29198866	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13531.0	NM_011829	23917.0	Mm.260707	NM_011829	ENSMUSG00000003500	Impdh1	B930086D20Rik|IMPDH-I	inosine monophosphate dehydrogenase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-123933886-3	chr9	123933776	123933976	+	581.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34816.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-24137460-2	chr1	24137438	24137638	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37197.0	NM_026604	68187.0	Mm.87130	NM_026604	ENSMUSG00000026153	Fam135a	4921533L14Rik|AI256732|AI835491	family with sequence similarity 135, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-30740927-2	chr13	30740827	30741027	+	621.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8306.0	NM_001347508	16364.0	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-34855446-4	chr18	34855346	34855546	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5761.0	NM_007913	13653.0	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-65113691-4	chr1	65113587	65113787	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175293, intron 5 of 7)	intron (NM_175293, intron 5 of 7)	9527.0	NM_175293	98303.0	Mm.348057	NM_175293	ENSMUSG00000044816	D630023F18Rik	AI314969	RIKEN cDNA D630023F18 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-8959115-3	chr3	8959025	8959225	+	691.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	5021.0	NM_001025262	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-32966241-3	chr17	32966145	32966345	+	984.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033585)	promoter-TSS (NR_033585)	414.0	NM_153063	224691.0	Mm.328953	NM_153063	ENSMUSG00000053600	Zfp472	KRIM-1|Krim-1A|Krim-1B|Krim1	zinc finger protein 472	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-32040155-1	chr4	32040055	32040255	+	916.0	f1_balb.idr	Intergenic	Intergenic	76048.0	NM_172688	26409.0	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding	0.869430632462896	1.16783994533916	1.13334440039514	1.87685387167692	1.59750283476497	0.92985649458755	2.04651837818789	1.79282235613589	1.06639921906443	0.409475272613811	0.893461151064622
Merged-chr10-81286470-2	chr10	81286370	81286570	+	656.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001282096)	promoter-TSS (NM_001282096)	-689.0	NM_001282096	27375.0	Mm.27984	NM_013769	ENSMUSG00000034917	Tjp3	-	tight junction protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81573874-2	chr10	81573774	81573974	+	578.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur3|SINE|Alu	-1413.0	NM_019725	21886.0	Mm.38608	NM_019725	ENSMUSG00000034771	Tle2	Grg2|mKIAA4188	transducin-like enhancer of split 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-44687041-2	chr18	44686941	44687141	+	831.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085373, intron 3 of 18)	intron (NM_001085373, intron 3 of 18)	-24775.0	NM_001085374	328949.0	Mm.312511	NM_001033406	ENSMUSG00000071856	Mcc	D18Ertd451e|E330037C19	mutated in colorectal cancers	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-6728376-4	chr2	6728279	6728479	+	998.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110232, intron 3 of 15)	L1_Mus2|LINE|L1	-6717.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-60898889-1	chr1	60898789	60898989	+	637.0	f0_c57.idr	Intergenic	Intergenic	-10136.0	NM_009843	12477.0	Mm.390	NM_009843	ENSMUSG00000026011	Ctla4	Cd152|Ctla-4|Ly-56	cytotoxic T-lymphocyte-associated protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-108894377-4	chr8	108894220	108894420	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007496, intron 4 of 9)	intron (NM_007496, intron 4 of 9)	-42540.0	NR_037295	100526511.0		NR_037295	ENSMUSG00000093241	Mir3108	mir-3108|mmu-mir-3108	microRNA 3108	ncRNA	-1.7024385483431	-1.81249224917775	-1.82134771053534	-1.82862185015837	-1.70038292649591	-1.81057323376012	-1.81934302819017	-1.82731978264371	0.0376840119903864	0.991491645451152	1
Merged-chr4-131917747-2	chr4	131917647	131917847	+	751.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_102394, intron 1 of 2)	intron (NR_102394, intron 1 of 2)	2282.0	NR_102394	545681.0	Mm.2478	NR_102393	ENSMUSG00000085667	Gm12992	-	predicted gene 12992	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125071284-4	chr6	125071248	125071448	+	979.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163268)	promoter-TSS (NM_001163268)	71.0	NM_001163268	381810.0	Mm.333386	NM_001163268	ENSMUSG00000067714	Lpar5	GPR93|Gm1072|Gpr92|LPA5	lysophosphatidic acid receptor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134642041-4	chr6	134641916	134642116	+	908.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026371, intron 1 of 3)	intron (NM_026371, intron 1 of 3)	1076.0	NM_026371	67774.0	Mm.41892	NM_026371	ENSMUSG00000042992	Borcs5	5830457J20Rik|AW124643|Loh12cr1	BLOC-1 related complex subunit 5	protein-coding	3.37528038840363	2.76453725884139	2.65789821910208	2.86543452614939	4.35466240255896	4.70021838934177	3.61559346658827	4.2276330485965	1.93495669550821	0.000299381627654741	0.00733057299714608
Merged-chr6-72361490-2	chr6	72361390	72361590	+	714.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_001331167, exon 3 of 6)	exon (NM_001331167, exon 3 of 6)	942.0	NM_001331171	66510.0	Mm.170023	NM_025607	ENSMUSG00000055850	Rnf181	1700047F16Rik|2500002L14Rik|6230415N01Rik|C77350	ring finger protein 181	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-35062325-4	chr9	35062288	35062488	+	996.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009178, intron 1 of 10)	RMER6B|LTR|ERVK	-54340.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	3.74358530420747	4.74059596754516	5.06991929935823	4.18681368423176	3.89914498296737	3.63721159295578	4.538304485024	3.82655408540654	-0.656556546749487	0.155711730655791	0.610928767307068
Merged-chr1-132328593-3	chr1	132328489	132328689	+	867.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195025, intron 5 of 7)	intron (NM_001195025, intron 5 of 7)	12464.0	NM_028778	74137.0	Mm.100666	NM_028778	ENSMUSG00000009772	Nuak2	1200013B22Rik|Omphk2|Snark|mKIAA0537	NUAK family, SNF1-like kinase, 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-73534766-3	chr12	73534661	73534861	+	661.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11634.0	NM_178715	238257.0	Mm.251196	NM_178715	ENSMUSG00000034435	Tmem30b	9130011B11Rik	transmembrane protein 30B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-51964580-2	chr15	51964480	51964680	+	866.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_009009, intron 13 of 13)	intron (NM_009009, intron 13 of 13)	27180.0	NM_009009	19357.0	Mm.182628	NM_009009	ENSMUSG00000022314	Rad21	SCC1|mKIAA0078	RAD21 cohesin complex component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81362830-2	chr10	81362730	81362930	+	592.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_028657, exon 7 of 10)	exon (NM_028657, exon 7 of 10)	2990.0	NM_001014836	432479.0	Mm.440450	NM_001014836	ENSMUSG00000020234	4930404N11Rik	2210409H10Rik|5730551K18Rik|AI854616	RIKEN cDNA 4930404N11 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-114922389-3	chr7	114922307	114922507	+	789.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26243.0	NR_040317	101786.0	Mm.395157	NR_040317	ENSMUSG00000108379	A730082K24Rik	AU044236	RIKEN cDNA A730082K24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28330218-2	chr17	28330118	28330318	+	671.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357628, intron 4 of 5)	intron (NM_001357628, intron 4 of 5)	1653.0	NM_001357628	19896.0	Mm.336955	NM_011287	ENSMUSG00000037805	Rpl10a	CsA-19|Nedd6	ribosomal protein L10A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-34483743-3	chr19	34483624	34483824	+	681.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-8589.0	NM_009890	12642.0	Mm.30824	NM_009890	ENSMUSG00000050370	Ch25h	AI462618|m25OH	cholesterol 25-hydroxylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-52279106-1	chr14	52279006	52279206	+	1000.0	f0_c57.idr	promoter-TSS (NM_023434)	promoter-TSS (NM_023434)	-40.0	NM_023434	268741.0	Mm.246237	NM_023434	ENSMUSG00000016831	Tox4	5730589K01Rik|A630040M18|AA410149|LCP1	TOX high mobility group box family member 4	protein-coding	4.49107874837256	3.92173983952387	4.54761818379038	4.66948516768041	3.65757340144292	3.46853464204647	4.92630962250043	2.30634278279674	-0.694741479802903	0.215799149205924	0.706180188649098
Merged-chr1-92179843-4	chr1	92179753	92179953	+	931.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207225, intron 1 of 26)	CpG	488.0	NM_207225	208727.0	Mm.318567	NM_207225	ENSMUSG00000026313	Hdac4	4932408F19Rik|HD4	histone deacetylase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-80895351-4	chr12	80895206	80895406	+	891.724976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29141.0	NR_033786	67340.0	Mm.386790	NR_033786	ENSMUSG00000101912	1700052I22Rik	-	RIKEN cDNA 1700052I22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-31057475-4	chr3	31057382	31057582	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18516.0	NR_105975	102465610.0		NR_105975	ENSMUSG00000098890	Mir7008	Gm27752|mmu-mir-7008	microRNA 7008	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-117996894-4	chr2	117996779	117996979	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_126479, intron 8 of 9)	intron (NR_126479, intron 8 of 9)	114323.0	NR_126479	329496.0	Mm.235844	NR_126479	ENSMUSG00000087203	Gm13986	C230060E24	predicted gene 13986	ncRNA	6.81770510800261	6.82822554897838	6.46859388605475	6.56815257055505	6.63337603845598	6.59745790776808	7.07205203833575	6.59343120402895	0.0618158357928312	0.752411842691594	0.998431161219273
Merged-chr10-20948446-2	chr10	20948346	20948546	+	972.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-4101.0	NM_026203	52906.0	Mm.253280	NM_026203	ENSMUSG00000019986	Ahi1	1700015F03Rik|Ahi-1|D10Bwg0629e	Abelson helper integration site 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-60978476-4	chr18	60978369	60978569	+	968.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177407, intron 15 of 17)	intron (NM_177407, intron 15 of 17)	14915.0	NM_001286809	12322.0	Mm.131530	NM_009792	ENSMUSG00000024617	Camk2a	CaMKII|R74975|mKIAA0968	calcium/calmodulin-dependent protein kinase II alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-45960446-4	chr10	45960353	45960553	+	818.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	152749.0	NR_040624	320363.0	Mm.123343	NR_040624	ENSMUSG00000110874	D030045P18Rik	-	RIKEN cDNA D030045P18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-40082585-3	chr12	40082477	40082677	+	903.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009132, intron 5 of 13)	intron (NM_009132, intron 5 of 13)	-44590.0	NM_001039515	11861.0	Mm.12723	NM_007487	ENSMUSG00000047446	Arl4a	AI467555|Arl4	ADP-ribosylation factor-like 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-54669641-1	chr3	54669541	54669741	+	544.0	f1_c57bl6.idr	Intergenic	Intergenic	-23174.0	NR_152185	56790.0	Mm.486375	NM_019995	ENSMUSG00000027751	Supt20	AA667204|AI450544|D3Ertd300e|Fam48a|Supt20h|p38IP	suppressor of Ty 20	protein-coding	-0.20687796195017	-0.193130659510853	0.247818692144471	0.0962556344773106	-0.206021988460448	-0.192112450336736	-0.196648239200069	0.422889758153487	-0.0498155767223043	0.983452545729816	1
Merged-chr13-55469954-2	chr13	55469854	55470054	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001030296, intron 1 of 2)	(TGG)n|Simple_repeat|Simple_repeat	5687.0	NM_001030296	432763.0	Mm.315457	NM_001030296	ENSMUSG00000034686	Prr7	XM_484263	proline rich 7 (synaptic)	protein-coding	0.832930624615839	1.08455430860471	1.03948916749201	0.571239862082859	0.840126126793252	1.09459591871602	1.04950609598526	0.572390762483349	0.0402919950699327	0.978878015109924	1
Merged-chr10-127507217-2	chr10	127507117	127507317	+	733.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359751, intron 6 of 11)	intron (NM_001359751, intron 6 of 11)	5500.0	NM_177707	237611.0	Mm.32087	NM_177707	ENSMUSG00000040287	Stac3	9830125E18	SH3 and cysteine rich domain 3	protein-coding	0.241618560885783	0.334987381977741	2.55631345268973	0.283275846272839	0.248078232152197	0.341150306440801	2.58191854337305	0.287433681853301	0.0414414004966969	0.989862446328306	0.998431161219273
Merged-chr6-86497450-4	chr6	86497355	86497555	+	947.326416	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-9228.0	NR_040292	381792.0	Mm.333223	NR_040292	ENSMUSG00000101655	2310040G24Rik	-	RIKEN cDNA 2310040G24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-30480666-4	chr9	30480543	30480743	+	974.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53314.0	NM_028874	102607.0	Mm.35084	NM_028874	ENSMUSG00000031993	Snx19	3526401K03Rik|AI195321|AI848208|mKIAA0254	sorting nexin 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-14152128-4	chr12	14152020	14152220	+	873.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029007)	promoter-TSS (NM_029007)	-82.0	NM_029007	105005.0	Mm.227253	NM_029007	ENSMUSG00000020607	Fam84a	2310003N02Rik|4731402F03Rik|AW125753|Nse1	family with sequence similarity 84, member A	protein-coding	2.25681236465867	1.99985426464935	2.17233986967091	2.10874476351278	1.1299307383173	1.86196392101562	2.38872553992049	1.16401933777741	-0.996369146326668	0.359063208003944	0.856306289008338
Merged-chr8-94777905-2	chr8	94777805	94778005	+	810.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009142, intron 1 of 2)	intron (NM_009142, intron 1 of 2)	5725.0	NM_009142	20312.0	Mm.103711	NM_009142	ENSMUSG00000031778	Cx3cl1	AB030188|ABCD-3|AI848747|CX3C|Cxc3|D8Bwg0439e|Scyd1	chemokine (C-X3-C motif) ligand 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-108416036-4	chr3	108415937	108416137	+	854.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017392)	promoter-TSS (NM_017392)	-543.0	NM_001004177	53883.0	Mm.39728	NM_017392	ENSMUSG00000068740	Celsr2	Adgrc2|EGFL2|Flamingo1|flamingo|mKIAA0279|mfmi1	cadherin, EGF LAG seven-pass G-type receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5785211-8	chr17	5785100	5785300	+	956.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13457.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-145786460-3	chr2	145786352	145786552	+	734.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028724, intron 2 of 12)	intron (NM_028724, intron 2 of 12)	336.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70565616-1	chr8	70565516	70565716	+	776.0	f0_balb.idr	intron (NM_007924, intron 1 of 11)	intron (NM_007924, intron 1 of 11)	25941.0	NM_007924	13716.0	Mm.271973	NM_007924	ENSMUSG00000070002	Ell	Ell1|Men	elongation factor RNA polymerase II	protein-coding	-0.83925942976422	-0.0556048430886985	-0.831717513378665	-0.834545744892566	-0.838556765398674	-0.61244825490253	-0.830910547400834	-0.834051054059713	-2.26051867687006	0.43998636293679	1
Merged-chr6-120085235-4	chr6	120085141	120085341	+	934.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-8139.0	NM_016718	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-7613052-5	chr3	7612922	7613122	+	947.2800289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001313890)	promoter-TSS (NM_001313890)	-129.0	NM_001313890	16196.0	Mm.3825	NM_008371	ENSMUSG00000040329	Il7	A630026I06Rik|Il-7|hlb368	interleukin 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-135558057-2	chr7	135557962	135558162	+	783.541626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001316678, intron 1 of 19)	intron (NM_001316678, intron 1 of 19)	-8100.0	NR_035488	100316818.0		NR_035488	ENSMUSG00000088141	Mir1962	mir-1962|mmu-mir-1962	microRNA 1962	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-66004098-2	chr5	66003998	66004198	+	736.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_027961, intron 1 of 6)	(TG)n|Simple_repeat|Simple_repeat	187.0	NR_027961	231253.0	Mm.436542	NM_177679	ENSMUSG00000054598	9130230L23Rik	-	RIKEN cDNA 9130230L23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-29983788-4	chr7	29983703	29983903	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001167873)	promoter-TSS (NM_001167873)	-152.0	NM_001167873	243905.0	Mm.322432	NM_001033355	ENSMUSG00000074221	Zfp568	C80731|Gm1691|Znf568|chato	zinc finger protein 568	protein-coding	7.33634320166434	7.83967155885719	7.99820274352897	7.11564775588351	7.72070542157325	7.52815082859645	7.55847328386971	7.25558159755424	-0.0896494824985259	0.637414856702136	0.982417279970648
Merged-chr12-76496436-3	chr12	76496321	76496521	+	772.361084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36791.0	NR_039597	100628604.0		NR_039597	ENSMUSG00000092738	Mir5135	mir-5135|mmu-mir-5135|mu-mir-5135	microRNA 5135	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55787840-2	chr19	55787740	55787940	+	726.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001331146, intron 4 of 14)	B4A|SINE|B4	46030.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-61265084-1	chr19	61264984	61265184	+	850.0	f1_balb.idr	Intergenic	B1_Mur3|SINE|Alu	-36666.0	NM_009970	12982.0	Mm.287228	NM_009970	ENSMUSG00000059326	Csf2ra	CD116|Csfgmra|GM-CSF-Ra|GM-CSFR	colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)	protein-coding	0.545152859812047	0.811890797853568	0.396628016858863	0.388791655529413	0.377563333432184	1.11293074281285	0.60837865601825	1.45912897402899	2.25520405807221	0.190116278665139	1
Merged-chr11-86999702-3	chr11	86999594	86999794	+	602.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5932.0	NM_001005341	77864.0	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-55112124-4	chr3	55112070	55112270	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144895)	promoter-TSS (NM_144895)	4.0	NM_001144987	229285.0	Mm.235523	NM_144895	ENSMUSG00000036580	Spg20	AI840044|C79168|SPARTIN|Spart|TAHCCP1|mKIAA0610	spastic paraplegia 20, spartin (Troyer syndrome) homolog (human)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-6247985-4	chr4	6247989	6248189	+	731.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27542.0	NM_007824	13122.0	Mm.57029	NM_007824	ENSMUSG00000028240	Cyp7a1	-	cytochrome P450, family 7, subfamily a, polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80160994-4	chr10	80160893	80161093	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 1 of 4)	intron (NR_038088, intron 1 of 4)	-6846.0	NM_007705	12696.0	Mm.17898	NM_007705	ENSMUSG00000045193	Cirbp	Cirp|R74941	cold inducible RNA binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-26997252-4	chr9	26997168	26997368	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025862, intron 1 of 10)	ORR1A4|LTR|ERVL-MaLR	2281.0	NM_025862	66948.0	Mm.289244	NM_025862	ENSMUSG00000031969	Acad8	2310016C19Rik|AI786953	acyl-Coenzyme A dehydrogenase family, member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24890523-2	chr17	24890423	24890623	+	765.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_152137, intron 3 of 5)	intron (NR_152137, intron 3 of 5)	3042.0	NM_027141	79043.0	Mm.274794	NM_027141	ENSMUSG00000024160	Spsb3	2310012N15Rik|3300001M01Rik|SSB3|Tce1|mKIAA4204	splA/ryanodine receptor domain and SOCS box containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-73313288-4	chr2	73313190	73313390	+	842.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025854)	promoter-TSS (NM_025854)	638.0	NM_001355711	74616.0	Mm.247457	NM_029022	ENSMUSG00000008226	Scrn3	4833415E20Rik|AI427019|AV002033|Ses3	secernin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120717196-2	chr8	120717096	120717296	+	851.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19162.0	NM_008320	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-115705837-6	chr8	115705680	115705880	+	800.722229	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001025577, exon 1 of 1)	exon (NM_001025577, exon 1 of 1)	1114.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-86545398-2	chr6	86545298	86545498	+	872.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NR_037961, intron 3 of 4)	intron (NR_037961, intron 3 of 4)	17997.0	NR_037961	72012.0	Mm.349174	NR_037960	ENSMUSG00000097048	1600020E01Rik	-	RIKEN cDNA 1600020E01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-10411231-4	chr10	10411105	10411305	+	896.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127353, intron 12 of 36)	intron (NM_001127353, intron 12 of 36)	61109.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	1.8919684487876	1.50297119383686	1.45679790853643	2.23473664475991	1.6197053646678	1.6766064045064	1.28537218582461	1.25522180149519	-1.13575151218619	0.299744773356251	0.801244565215384
Merged-chr11-104001705-4	chr11	104001606	104001806	+	920.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34835.0	NM_007477	11841.0	Mm.5061	NM_007477	ENSMUSG00000062421	Arf2	-	ADP-ribosylation factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-27660574-2	chr15	27660474	27660674	+	742.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198301, intron 4 of 6)	intron (NM_198301, intron 4 of 6)	20968.0	NM_001242424	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-84771307-2	chr12	84771207	84771407	+	779.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023409, intron 1 of 3)	B4|SINE|B4	1805.0	NM_023409	67963.0	Mm.282556	NM_023409	ENSMUSG00000021242	Npc2	2700012J19Rik|AA408070|AU045843|HE1	NPC intracellular cholesterol transporter 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-97661418-4	chr3	97661329	97661529	+	912.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_182997, intron 2 of 7)	MER58A|DNA|hAT-Charlie	3217.0	NM_182997	108097.0	Mm.31175	NM_182997	ENSMUSG00000038205	Prkab2	5730553K21Rik|AW049591|BB124140	protein kinase, AMP-activated, beta 2 non-catalytic subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-20927968-2	chr11	20927868	20928068	+	670.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-96860.0	NM_173752	216551.0	Mm.76694	NM_173752	ENSMUSG00000042363	Lgalsl	1110067D22Rik|A530071M23|Grpa|Hspc159|Lgalsla	lectin, galactoside binding-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-62489454-2	chr10	62489354	62489554	+	838.875	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2649.0	NM_001358543	30930.0	Mm.260703	NM_133672	ENSMUSG00000020078	Vps26a	AA407240|HB58|Vps26	VPS26 retromer complex component A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-40544779-4	chr12	40544682	40544882	+	821.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	98729.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-51052857-2	chr14	51052757	51052957	+	795.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2694.0	NM_001011877	497113.0	Mm.379741	NM_001011877	ENSMUSG00000059648	Rnase11	Raj1	ribonuclease, RNase A family, 11 (non-active)	protein-coding	-0.338029216648953	-0.325684364525828	-0.329739614121904	-0.332861123900765	-0.0732101010857526	0.0268314310173859	-0.328846109161176	0.287409804844335	3.62244458374649	0.135127374454346	1
Merged-chr5-110176875-4	chr5	110176793	110176993	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008146)	promoter-TSS (NM_008146)	36.0	NM_008146	269682.0	Mm.9392	NM_008146	ENSMUSG00000029502	Golga3	5330413L04|5430416E01Rik|AI449376|AW490576|G1-499-14|Mea-2|Mea2|Mea2/Golga3|repro27	golgi autoantigen, golgin subfamily a, 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-71291985-4	chr4	71291890	71292090	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPLTR3-int|LTR|ERVK	-757062.0	NM_172694	230316.0	Mm.251188	NM_172694	ENSMUSG00000039270	Megf9	4933405H16Rik|9630025C07|Egfl5|mKIAA0818	multiple EGF-like-domains 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-27198591-4	chr7	27198471	27198671	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290513, intron 2 of 7)	PB1D7|SINE|Alu	-2300.0	NM_001285825	53607.0	Mm.386890	NM_015782	ENSMUSG00000061479	Snrpa	C430021M15Rik|Rnu1a-1|Rnu1a1|U1-A|U1A	small nuclear ribonucleoprotein polypeptide A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-61726331-4	chr18	61726217	61726417	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021296)	promoter-TSS (NM_021296)	14.0	NM_021296	17714.0	Mm.269657	NM_021296	ENSMUSG00000024580	Grpel2	mt-GrpE#2|mt-Grpel2	GrpE-like 2, mitochondrial	protein-coding	3.23581120559462	2.61346829238474	1.5013550654183	2.30264702253638	2.19584176366501	3.19832263850822	3.09148215902283	3.58854620701033	0.964526388940348	0.227660656538251	0.720995250870592
Merged-chr17-35220765-4	chr17	35220649	35220849	+	967.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010909, exon 4 of 4)	exon (NM_010909, exon 4 of 4)	-14261.0	NM_001347351	66237.0	Mm.396107	NM_023179	ENSMUSG00000024403	Atp6v1g2	1500002D01Rik|Atp6g2|NG38|VAG2	ATPase, H+ transporting, lysosomal V1 subunit G2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-43523495-4	chr18	43523392	43523592	+	814.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-85206.0	NM_001291455	22240.0	Mm.8180	NM_009468	ENSMUSG00000024501	Dpysl3	CRMP-4|DRP-3|TUC4|ULIP-1|Ulip|Ulip1	dihydropyrimidinase-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-35157475-4	chr4	35157368	35157568	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178061)	promoter-TSS (NM_178061)	16.0	NM_178061	214944.0	Mm.32968	NM_178061	ENSMUSG00000073910	Mob3b	8430436F23Rik|A430018A01Rik|Mobkl2b	MOB kinase activator 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-24103503-4	chr10	24103392	24103592	+	689.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1541.0	NM_001010840	494546.0	Mm.379739	NM_001010840	ENSMUSG00000100004	Taar8c	taR-8c	trace amine-associated receptor 8C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-102722196-4	chr15	102722074	102722274	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026192)	promoter-TSS (NM_026192)	4.0	NM_026192	67488.0	Mm.71682	NM_026192	ENSMUSG00000023055	Calcoco1	1810009B06Rik|Cocoa|Gcap11|mKIAA1536	calcium binding and coiled coil domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-76962360-4	chr12	76962246	76962446	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146176)	promoter-TSS (NM_001146176)	-98.0	NM_001146176	17187.0	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-112492596-2	chr2	112492497	112492697	+	800.5	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_028844)	promoter-TSS (NM_028844)	-367.0	NM_028844	74268.0	Mm.315125	NM_028844	ENSMUSG00000003604	Aven	1700013A01Rik|1700056A21Rik|mAven-L|mAven-S	apoptosis, caspase activation inhibitor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-73655562-1	chr15	73655462	73655662	+	541.0	f1_balb.idr	Intergenic	PB1D10|SINE|Alu	-30818.0	NM_001033219	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-91633530-1	chr12	91633430	91633630	+	554.0	f1_c57bl6.idr	3' UTR (NM_175367, exon 7 of 7)	3' UTR (NM_175367, exon 7 of 7)	-43043.0	NM_175335	83602.0	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115277128-4	chr11	115277054	115277254	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007997)	promoter-TSS (NM_007997)	-185.0	NM_007997	14149.0	Mm.4719	NM_007997	ENSMUSG00000018861	Fdxr	AR	ferredoxin reductase	protein-coding	6.52320222270691	6.50948090926781	7.42912310402848	6.49847585364597	6.34981458799643	5.89583426902334	6.53574270271806	5.75197724759095	-0.675468098289126	0.00963899457255638	0.106164617700304
Merged-chr10-81136987-4	chr10	81136916	81137116	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010731, intron 1 of 2)	CpG	745.0	NM_010731	16969.0	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-50212126-4	chr11	50212028	50212228	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-1308.0	NM_011018	18412.0	Mm.40828	NM_011018	ENSMUSG00000015837	Sqstm1	A170|OSF-6|Osi|STAP|STONE14|p62	sequestosome 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-46088055-3	chr4	46087967	46088167	+	985.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021883, intron 4 of 9)	intron (NM_021883, intron 4 of 9)	48845.0	NM_021883	21916.0	Mm.249594	NM_021883	ENSMUSG00000028328	Tmod1	E-Tmod|Tmod	tropomodulin 1	protein-coding	1.72871380147406	2.52864575477262	1.55829178387286	2.07469649085278	2.80481683638971	1.12501581087243	1.35811360061663	1.3188687200248	-0.319977412383714	0.773357986764836	0.998431161219273
Merged-chr7-135520433-3	chr7	135520314	135520514	+	738.188904	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178669, intron 1 of 2)	intron (NM_178669, intron 1 of 2)	8240.0	NM_178669	212070.0	Mm.39721	NM_178669	ENSMUSG00000050866	Clrn3	AI649392|Tmem12	clarin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-9748497-4	chr1	9748394	9748594	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173443)	promoter-TSS (NM_173443)	-112.0	NM_173443	70675.0	Mm.274493	NM_173443	ENSMUSG00000045210	Vcpip1	4932442A08|5730421J18Rik|5730538E15Rik|VCIP135|mKIAA1850	valosin containing protein (p97)/p47 complex interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-80686276-2	chr17	80686176	80686376	+	651.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360278, intron 1 of 33)	L1M4|LINE|L1	41749.0	NM_001360278	225028.0	Mm.311948	NM_001081357	ENSMUSG00000024242	Map4k3	4833416M01Rik|4833416M07Rik|9530052P13Rik|Glk|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1	mitogen-activated protein kinase kinase kinase kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19462798-2	chr7	19462698	19462898	+	543.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-4304.0	NM_172279	232944.0	Mm.260504	NM_172279	ENSMUSG00000030397	Mark4	2410090P21Rik|C79806|Markl1	MAP/microtubule affinity regulating kinase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-38761594-4	chr16	38761513	38761713	+	999.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152434, intron 4 of 6)	ORR1F|LTR|ERVL-MaLR	19354.0	NM_001285793	56375.0	Mm.182377	NM_019804	ENSMUSG00000022793	B4galt4	9130402O08Rik|B4galt-IV|b4Gal-T4|beta4Gal-T4|beta4GalT-IV	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-46857286-4	chr17	46857193	46857393	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-25880.0	NM_001100452	210982.0	Mm.37642	NM_001100452	ENSMUSG00000036568	Bicral	Gltscr1l|mKIAA0240	BRD4 interacting chromatin remodeling complex associated protein like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-62408730-4	chr4	62408620	62408820	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027297)	promoter-TSS (NM_027297)	-63.0	NM_027297	70052.0	Mm.30660	NM_027297	ENSMUSG00000066148	Prpf4	1600015H11Rik|AI874830|AW047464|bN189G18.1	pre-mRNA processing factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-39076727-4	chr6	39076628	39076828	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 10 of 12)	intron (NM_011539, intron 10 of 12)	-9142.0	NR_040523	69986.0	Mm.490941	NR_040523	ENSMUSG00000100121	1700025N23Rik	-	RIKEN cDNA 1700025N23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-105971935-4	chr1	105971820	105972020	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18362.0	NR_151625	635504.0	Mm.359717	NR_151625		Gm7160	EG635504	predicted gene 7160	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-25656575-2	chr14	25656475	25656675	+	554.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 20 of 23)	intron (NM_183208, intron 20 of 23)	-37595.0	NM_134084	105675.0	Mm.41656	NM_134084	ENSMUSG00000021868	Ppif	AW457192|CyP-D|CyP-F|CypD|PPIase	peptidylprolyl isomerase F (cyclophilin F)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-108446344-4	chr6	108446235	108446435	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 44 of 61)	intron (NM_010585, intron 44 of 61)	-43408.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-38967407-4	chr6	38967322	38967522	+	937.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 3 of 12)	ORR1D2|LTR|ERVL-MaLR	48436.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128790937-4	chr10	128790849	128791049	+	910.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164197)	promoter-TSS (NM_001164197)	-6.0	NM_021412	58223.0	Mm.131266	NM_021412	ENSMUSG00000025355	Mmp19	-	matrix metallopeptidase 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-123505461-1	chr3	123505361	123505561	+	547.0	f1_c57bl6.idr	exon (NM_008939, exon 10 of 11)	exon (NM_008939, exon 10 of 11)	2605.0	NR_028573	100306957.0	Mm.260791	NR_028573	ENSMUSG00000092730	Snora24	ACA24	small nucleolar RNA, H/ACA box 24	snoRNA	-0.294083384950798	-0.277963382818132	0.430175288204581	-0.287290034214969	-0.293070061983337	-0.276782190008417	0.44311158986884	-0.286577643912737	0.0410571026119648	0.987250810110592	1
Merged-chr1-195003105-4	chr1	195003132	195003332	+	776.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14167.0	NR_015566	320977.0	Mm.99905	NR_015566	ENSMUSG00000096929	A330023F24Rik	C030002C11Rik	RIKEN cDNA A330023F24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-73937835-4	chr13	73937741	73937941	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027182)	promoter-TSS (NM_027182)	30.0	NM_001308041	105246.0	Mm.278509	NM_001024508	ENSMUSG00000057649	Brd9	AL022779	bromodomain containing 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-183804018-4	chr1	183803900	183804100	+	995.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151520, intron 2 of 2)	intron (NR_151520, intron 2 of 2)	55023.0	NR_151520	102637191.0	Mm.417076	NR_151520	ENSMUSG00000103305	Gm34068	-	predicted gene, 34068	ncRNA	3.01467327050227	3.17134560241509	3.93679894006513	3.77640288185109	3.04056654963711	3.68299473808569	3.84581980052227	2.98866567516198	-0.145463337835468	0.799735015350582	0.998431161219273
Merged-chr14-55605017-4	chr14	55604907	55605107	+	927.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159418, intron 1 of 8)	B1_Mur1|SINE|Alu	428.0	NM_001159418	16391.0	Mm.2032	NM_008394	ENSMUSG00000002325	Irf9	Irf-9|Isgf3g|p48	interferon regulatory factor 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-104259927-2	chr9	104259827	104260027	+	595.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359740, intron 1 of 56)	L1MCc|LINE|L1	3003.0	NM_001359740	235567.0	Mm.217256	NM_001163026	ENSMUSG00000032560	Dnajc13	D030002L11Rik|Gm1124|RME-8|Rme8|mKIAA0678	DnaJ heat shock protein family (Hsp40) member C13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-170321640-4	chr2	170321538	170321738	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34723.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-8994915-1	chr3	8994815	8995015	+	549.0	f1_balb.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	9289.0	NM_001357073	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	-0.291192577323461	0.1909683018958	-0.283075421426616	-0.286134820076054	0.0726681836730584	-0.278196544348352	-0.282199072224812	0.124047850601751	0.648690498868902	0.793590428953631	1
Merged-chr6-4601615-3	chr6	4601514	4601714	+	694.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145398, intron 1 of 17)	intron (NM_145398, intron 1 of 17)	548.0	NM_145398	213819.0	Mm.270703	NM_145398	ENSMUSG00000015189	Casd1	Cas1|Cast1|SOAT	CAS1 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43546892-1	chr4	43546792	43546992	+	621.0	f1_c57bl6.idr	exon (NM_011602, exon 20 of 57)	exon (NM_011602, exon 20 of 57)	15691.0	NM_011602	21894.0	Mm.208601	NM_011602	ENSMUSG00000028465	Tln1	Tln	talin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83505926-2	chr6	83505798	83505998	+	661.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_149734, intron 1 of 6)	intron (NR_149734, intron 1 of 6)	1071.0	NM_013764	27369.0	Mm.42234	NM_013764	ENSMUSG00000014554	Dguok	dGK|dGK1|dGK2|dGK3	deoxyguanosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-116140662-4	chr9	116140678	116140878	+	737.408325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029575, intron 1 of 6)	intron (NM_029575, intron 1 of 6)	34585.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	-0.476169177188348	-0.280058553699151	-0.299623122292098	-0.47166471960743	-0.475500633579301	-0.275658248018508	0.0866801063205221	-0.471189301097406	1.37716002131286	0.577329727035167	1
Merged-chr3-157933704-1	chr3	157933604	157933804	+	1000.0	f1_c57bl6.idr	Intergenic	RLTR11A2|LTR|ERVK	-8641.0	NM_145953	107869.0	Mm.28301	NM_145953	ENSMUSG00000028179	Cth	0610010I13Rik|AI314617|BC019483|CSE|Cys3	cystathionase (cystathionine gamma-lyase)	protein-coding	-0.822462705120757	-0.812556056629881	-0.815976647844307	-0.818416662570211	-0.546430838844095	-0.809717413752937	-0.815278756332027	-0.175246647052055	3.16603683725386	0.281247844440664	1
Merged-chr5-150178382-4	chr5	150178294	150178494	+	724.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-81536.0	NM_172887	320365.0	Mm.216590	NM_172887	ENSMUSG00000056602	Fry	13CDNA73|9330186A19Rik|AF346502|AI462658|C87180|D930046M03|cg003|mKIAA4143	FRY microtubule binding protein	protein-coding	-0.631420400380777	-0.448232280169671	-0.466498896226889	-0.627912629701004	-0.387258406092155	-0.444115273596622	-0.462469152746902	-0.627541291502769	0.899357931903401	0.712546956393079	1
Merged-chr5-20943743-6	chr5	20943622	20943822	+	941.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080977, intron 1 of 7)	intron (NM_001080977, intron 1 of 7)	-7267.0	NR_030699	320770.0	Mm.491217	NR_030699	ENSMUSG00000101013	A630072M18Rik	Aptr	RIKEN cDNA A630072M18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-23304376-2	chr11	23304276	23304476	+	720.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2519.0	NM_001190401	17847.0	Mm.119155	NM_001190401	ENSMUSG00000056342	Usp34	A530081C03Rik|Murr2	ubiquitin specific peptidase 34	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-73059936-4	chr6	73059819	73060019	+	954.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164669, intron 61 of 76)	MTEa|LTR|ERVL-MaLR	-101171.0	NM_001190327	19240.0	Mm.3532	NM_025284	ENSMUSG00000079523	Tmsb10	Ptmb10|Tb10	thymosin, beta 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-61533852-4	chr11	61533763	61533963	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252188, intron 5 of 10)	intron (NM_001252188, intron 5 of 10)	28719.0	NM_001330781	27078.0	Mm.261226	NM_013717	ENSMUSG00000001039	B9d1	AW045994|B9|Eppb9	B9 protein domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-88493437-2	chr10	88493337	88493537	+	792.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144807, intron 1 of 7)	intron (NM_144807, intron 1 of 7)	10533.0	NR_027477	212862.0	Mm.288897	NM_144807	ENSMUSG00000060002	Chpt1	-	choline phosphotransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-44117047-2	chr4	44116947	44117147	+	564.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-4846.0	NR_040414	623796.0	Mm.490409	NR_040414	ENSMUSG00000084274	Gm12504	-	prothymosin alpha pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124839848-2	chr6	124839748	124839948	+	961.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_013530, intron 1 of 9)	intron (NM_013530, intron 1 of 9)	427.0	NM_013530	14695.0	Mm.68889	NM_013530	ENSMUSG00000023439	Gnb3	Gnb-3	guanine nucleotide binding protein (G protein), beta 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191196339-2	chr1	191196239	191196439	+	621.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13006.0	NM_007498	11910.0	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141134342-3	chr7	141134242	141134442	+	738.266663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013782, intron 1 of 11)	intron (NM_013782, intron 1 of 11)	3056.0	NM_013782	27388.0	Mm.293591	NM_013782	ENSMUSG00000025495	Ptdss2	AI481134|AI988017|PSS2	phosphatidylserine synthase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-43849395-4	chr6	43849293	43849493	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-183115.0	NM_001311111	29807.0	Mm.320979	NM_013861	ENSMUSG00000029735	Tpk1	-	thiamine pyrophosphokinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-21962841-2	chr19	21962747	21962947	+	686.875	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-176270.0	NM_001035239	226025.0	Mm.131943	NM_177341	ENSMUSG00000052387	Trpm3	6330504P12Rik|9330180E14|AU018608|B930001P07Rik|LTRPC3|MLSN2	transient receptor potential cation channel, subfamily M, member 3	protein-coding	1.30673178700397	2.25062857758836	1.15318795602315	1.56035054905854	2.55192387029765	2.47795044394359	1.93919752503489	1.73358956977424	1.5467345477619	0.139169827231088	0.582880935694182
Merged-chr4-141540211-1	chr4	141540111	141540311	+	545.0	f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-1614.0	NM_019763	56381.0	Mm.299906	NM_019763	ENSMUSG00000040761	Spen	Mint|mKIAA0929	spen family transcription repressor	protein-coding	1.90891789257247	1.17299179363922	2.80512542528947	2.13740430190607	1.31086868698017	1.17967312977506	2.60840505789437	2.14934847340573	-0.424036421335597	0.703005407604782	0.998431161219273
Merged-chr2-128769203-3	chr2	128769105	128769305	+	863.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 8 of 18)	RLTR11B|LTR|ERVK	-49098.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	1.32504969644746	0.869924802990397	0.85000934520314	1.40550413107842	1.018256945104	2.37774010607469	1.85054826003351	1.41370076548703	2.09869808449372	0.0998643755128049	0.491591675630183
Merged-chr6-146080267-2	chr6	146080167	146080367	+	882.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	146145.0	NM_010656	16651.0	Mm.49689	NM_010656	ENSMUSG00000030255	Sspn	Krag	sarcospan	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-25914106-4	chr17	25914017	25914217	+	899.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139154, intron 2 of 6)	intron (NM_139154, intron 2 of 6)	5597.0	NM_139154	224624.0	Mm.328872	NM_139154	ENSMUSG00000025730	Rab40c	RAR3	Rab40C, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-84606608-1	chr7	84606508	84606708	+	610.0	f0_balb.idr	promoter-TSS (NM_010176)	promoter-TSS (NM_010176)	-666.0	NM_010176	14085.0	Mm.3798	NM_010176	ENSMUSG00000030630	Fah	swst	fumarylacetoacetate hydrolase	protein-coding	-0.953721354153451	-1.41025554057125	-1.42001056191158	-1.42802362688808	-1.44024889148474	-1.40814158675276	-1.41780223890411	-1.42658929208844	-2.11310844444413	0.543369238581748	1
Merged-chr2-131263483-2	chr2	131263383	131263583	+	859.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_149748, intron 1 of 8)	intron (NR_149748, intron 1 of 8)	644.0	NR_149748	74450.0	Mm.101264	NM_153501	ENSMUSG00000037514	Pank2	4933409I19Rik|AI642621	pantothenate kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-25579520-2	chr2	25579420	25579620	+	849.642822	f1_balb.idr|f1_c57bl6.idr	exon (NM_001005424, exon 1 of 1)	exon (NM_001005424, exon 1 of 1)	579.0	NM_001005424	381353.0	Mm.379511	NM_001005424	ENSMUSG00000029419	Gm996	Ajm1	predicted gene 996	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-42170574-4	chr19	42170503	42170703	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177319)	promoter-TSS (NM_177319)	36.0	NM_001164531	319740.0	Mm.287359	NM_177319	ENSMUSG00000018820	Zfyve27	2210011N02Rik|9530077C24Rik|AI426636|AI593546|AI835681	zinc finger, FYVE domain containing 27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-144277447-3	chr5	144277338	144277538	+	739.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040432, intron 1 of 2)	intron (NR_040432, intron 1 of 2)	377.0	NR_040432	100504231.0	Mm.441035	NR_040432	ENSMUSG00000086894	Gm15708	-	predicted gene 15708	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-57061327-2	chr17	57061227	57061427	+	683.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347408)	promoter-TSS (NM_001347408)	-874.0	NM_001359814	224912.0	Mm.284447	NM_177638	ENSMUSG00000044279	Crb3	5730439B18|AU015179|AU041752	crumbs family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-74206039-2	chr1	74205939	74206139	+	861.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_035449)	TTS (NR_035449)	581.0	NR_035449	100316687.0		NR_035449	ENSMUSG00000087820	Mir1928	mmu-mir-1928	microRNA 1928	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-53072894-2	chr2	53072794	53072994	+	547.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 8 of 26)	intron (NM_172409, intron 8 of 26)	118293.0	NM_018785	56194.0	Mm.257474	NM_018785	ENSMUSG00000061136	Prpf40a	2810012K09Rik|FBP-11|FBP11|Fnbp11|Fnbp3	pre-mRNA processing factor 40A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-30930375-3	chr1	30930282	30930482	+	730.138916	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	19328.0	NR_002688	433406.0	Mm.389003	NR_002688		Gm13363	-	predicted gene 13363	pseudo	0.60331632290873	1.30924089671164	0.173199843440237	0.166080431194155	0.155870078009573	0.184338270656837	0.849942585221219	0.167330341824402	-1.46480112988367	0.467882359228875	1
Merged-chr5-135145775-4	chr5	135145701	135145901	+	762.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3910.0	NM_013763	27368.0	Mm.36746	NM_013763	ENSMUSG00000005374	Tbl2	C76179|WS-bTRP	transducin (beta)-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-94434311-4	chr8	94434199	94434399	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_015514, exon 2 of 3)	non-coding (NR_015514, exon 2 of 3)	804.0	NR_015514	320377.0	Mm.486022	NR_015514		9330175E14Rik	A630085K21	RIKEN cDNA 9330175E14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116146265-4	chr11	116146160	116146360	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172571, intron 26 of 30)	intron (NM_172571, intron 26 of 30)	-7392.0	NM_024177	60441.0	Mm.29974	NM_024177	ENSMUSG00000020775	Mrpl38	1110036N21Rik|4733401F03Rik|MRP-L3|R75240|Rpml3	mitochondrial ribosomal protein L38	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-173933609-1	chr1	173933509	173933709	+	689.0	f1_balb.idr	intron (NM_001302649, intron 6 of 9)	MMERVK10C-int|LTR|ERVK	8883.0	NM_001302649	15950.0	Mm.463437	NM_008328	ENSMUSG00000039997	Ifi203	Ifi203a|Ifi203b|Mndal	interferon activated gene 203	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-145167428-2	chr2	145167328	145167528	+	777.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356497)	promoter-TSS (NM_001356497)	-347.0	NM_001356497	94249.0	Mm.217171	NM_053195	ENSMUSG00000063873	Slc24a3	NCKX3	solute carrier family 24 (sodium/potassium/calcium exchanger), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123039199-4	chr5	123039070	123039270	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029112, intron 3 of 4)	intron (NM_029112, intron 3 of 4)	7846.0	NM_029112	74890.0	Mm.141383	NM_029112	ENSMUSG00000029477	Morn3	4930438O03Rik	MORN repeat containing 3	protein-coding	-1.5061220274826	-1.47360709383584	-1.48343987814663	-1.49151681994238	-1.50383953926072	-1.47147628845725	-1.0170701920923	-1.49007105122263	2.15652851593596	0.535359572134045	1
Merged-chr11-48901543-2	chr11	48901443	48901643	+	741.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001024230, intron 2 of 4)	intron (NM_001024230, intron 2 of 4)	609.0	NM_001024230	432555.0	Mm.338931	NM_001024230	ENSMUSG00000058163	Gm5431	EG432555|Irgb9b8	predicted gene 5431	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117870691-2	chr10	117870591	117870791	+	670.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24717.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-58136241-5	chr18	58136145	58136345	+	890.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010181, intron 7 of 64)	intron (NM_010181, intron 7 of 64)	73681.0	NM_010181	14119.0	Mm.20271	NM_010181	ENSMUSG00000024598	Fbn2	BC063774|Fib-2|mKIAA4226|sne|sy	fibrillin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-79774530-4	chr15	79774450	79774650	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017470)	promoter-TSS (NM_017470)	-83.0	NM_017470	54152.0	Mm.288159	NM_017470	ENSMUSG00000022420	Dnal4	D15Ertd424e|Dnalc4	dynein, axonemal, light chain 4	protein-coding	1.25295341733133	0.692111359619354	1.88754943750495	1.33814277045247	0.64653672668007	0.69555869703894	0.680040711549534	1.75176800709034	-1.07342659304414	0.491399407116678	0.934557236592926
Merged-chr8-126597771-4	chr8	126597683	126597883	+	774.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4347.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	-0.255750218767642	-0.486681832242957	-0.192986695884637	-0.492176356430938	-0.495521118682008	-0.306472366799844	-0.18631871091235	-0.491760910344181	-0.163402802666317	0.947406800363896	1
Merged-chr7-88327687-3	chr7	88327567	88327767	+	872.305542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49582.0	NM_001311790	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	4.1701469774447	4.1168708094934	4.23496109696909	4.37875784037014	4.24786905476404	4.92472207135484	4.20727084558764	3.04067608057337	0.0331070365590116	0.944044078983648	0.998431161219273
Merged-chr18-7610379-3	chr18	7610265	7610465	+	879.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081287, intron 1 of 16)	intron (NM_001081287, intron 1 of 16)	-2211.0	NM_001360860	75739.0	Mm.133293	NM_001081287	ENSMUSG00000057440	Mpp7	1110068J02Rik|2810038M04Rik|5430426E14Rik|AI415104|Gm955	membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)	protein-coding	-0.187098311090191	-0.15831356047382	1.29079020501456	0.3858465723877	-0.185237328304308	-0.1562692282237	-0.165464668001481	-0.173483156394542	-4.37666107687756	0.0473093911262885	1
Merged-chr11-109417672-4	chr11	109417543	109417743	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8303.0	NM_025275	13929.0	Mm.211850	NM_025275	ENSMUSG00000020610	Amz2	AA408420|ESTM12|X83328	archaelysin family metallopeptidase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-32172255-3	chr18	32172156	32172356	+	667.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011946, intron 1 of 16)	intron (NM_011946, intron 1 of 16)	9167.0	NM_011946	26405.0	Mm.211762	NM_011946	ENSMUSG00000024383	Map3k2	9630061B06Rik|AI585793|Mekk2|Mekk2b	mitogen-activated protein kinase kinase kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72162374-4	chr6	72162287	72162487	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39190.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-50252878-4	chr6	50252765	50252965	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018769, intron 1 of 9)	MLTR11B|LTR|ERVK	8904.0	NM_018769	54722.0	Mm.248361	NM_018769	ENSMUSG00000029821	Gsdme	2310037D07Rik|4932441K13Rik|Dfna5|Dfna5h|EG14210|Fin15	gasdermin E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70856984-4	chr8	70856841	70857041	+	941.2291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_032397)	promoter-TSS (NM_032397)	67.0	NM_032397	84036.0	Mm.32074	NM_032397	ENSMUSG00000002908	Kcnn1	AI854248|KCa2.1|SK1	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1	protein-coding	2.31185684614505	2.30778730675679	1.23106606724046	2.43986044444526	2.16338072837743	1.26445610774592	2.24570118739184	1.79819532047139	-0.580398917682848	0.580514519113156	0.966599221005409
Merged-chr4-135947133-4	chr4	135947058	135947258	+	989.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357529)	promoter-TSS (NM_001357529)	-248.0	NM_001357529	15356.0	Mm.482102	NM_008254	ENSMUSG00000028672	Hmgcl	AW476067|HL	3-hydroxy-3-methylglutaryl-Coenzyme A lyase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-192092588-4	chr1	192092489	192092689	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011633)	promoter-TSS (NM_011633)	10.0	NM_011633	22033.0	Mm.380491	NM_011633		Traf5	-	TNF receptor-associated factor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-31083368-2	chr3	31083268	31083468	+	617.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-11690.0	NM_001039090	20482.0	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-58035654-3	chr13	58035556	58035756	+	601.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195075, intron 8 of 16)	intron (NM_001195075, intron 8 of 16)	-12456.0	NR_030544	100124491.0		NR_030544	ENSMUSG00000077962	Mir874	Mirn874|mir-874|mmu-mir-874	microRNA 874	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-11340496-4	chr8	11340399	11340599	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009932, intron 3 of 47)	intron (NM_009932, intron 3 of 47)	-27673.0	NM_009931	12826.0	Mm.738	NM_009931	ENSMUSG00000031502	Col4a1	Bru|Col4a-1|Raw|Svc	collagen, type IV, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-106204685-4	chr9	106204596	106204796	+	933.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011876, intron 1 of 8)	intron (NM_011876, intron 1 of 8)	1588.0	NM_011876	23999.0	Mm.274346	NM_011876	ENSMUSG00000023277	Twf2	A6-related|AU014993|Ptk9l|Ptk9r	twinfilin actin binding protein 2	protein-coding	1.97464098759325	1.66743395960209	2.14087649580865	2.17518465158683	1.66040088520174	2.23302438406695	1.44209843146411	1.58563800175329	-0.686740084664538	0.48884706586502	0.933746049075178
Merged-chr5-76244575-3	chr5	76244481	76244681	+	731.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007715, intron 11 of 22)	intron (NM_007715, intron 11 of 22)	58921.0	NM_001305222	12753.0	Mm.3552	NM_007715	ENSMUSG00000029238	Clock	5330400M04Rik|KAT13D	circadian locomotor output cycles kaput	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-94857460-4	chr8	94857366	94857566	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009090)	promoter-TSS (NM_009090)	16.0	NM_009090	20021.0	Mm.292492	NM_009090	ENSMUSG00000031783	Polr2c	33kDa|RPB3|Rpo2-3|mRBP31	polymerase (RNA) II (DNA directed) polypeptide C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-94187514-4	chr8	94187412	94187612	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8423.0	NM_013602	17748.0	Mm.192991	NM_013602	ENSMUSG00000031765	Mt1	MT-I|Mt-1	metallothionein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-99177146-4	chr4	99177037	99177237	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16797.0	NM_175029	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	5.94246835974534	5.55922180174018	5.804314210646	5.94448318877096	5.77421358796136	5.95716094800279	6.26472446503389	6.14881489822693	0.2421746991895	0.310094616931375	0.811012820576792
Merged-chr4-144902363-2	chr4	144902263	144902463	+	920.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357274, intron 2 of 6)	MLT1D|LTR|ERVL-MaLR	9226.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-30959404-3	chr5	30959303	30959503	+	884.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_016703, exon 2 of 9)	exon (NM_016703, exon 2 of 9)	924.0	NM_001294302	50907.0	Mm.272414	NM_016703	ENSMUSG00000045302	Preb	C85705	prolactin regulatory element binding	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-31284628-4	chr6	31284543	31284743	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040262, intron 2 of 5)	intron (NR_040262, intron 2 of 5)	64292.0	NR_040259	73652.0	Mm.441297	NR_040257	ENSMUSG00000087380	2210408F21Rik	-	RIKEN cDNA 2210408F21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30278142-1	chr7	30278042	30278242	+	658.0	f1_balb.idr	intron (NR_152437, intron 1 of 32)	B1_Mur1|SINE|Alu	-1952.0	NR_144498	108167416.0	Mm.471845	NR_144498		LOC108167416	-	uncharacterized LOC108167416	ncRNA	2.02942101337464	1.34902216979674	3.2830105922254	1.54510326282116	2.97474115146416	1.9394247883993	2.4112985905486	4.08608196159707	1.42987830397275	0.122050872174881	0.547358471600131
Merged-chr6-77013147-1	chr6	77013047	77013247	+	847.0	f1_balb.idr	intron (NM_145732, intron 10 of 18)	intron (NM_145732, intron 10 of 18)	-229330.0	NR_155299	74342.0	Mm.292568	NM_028880	ENSMUSG00000060780	Lrrtm1	4632401D06Rik|AW125451	leucine rich repeat transmembrane neuronal 1	protein-coding	-0.462568745007129	0.423388656171049	-0.452781542840528	-0.456449457143365	-0.0475509661640267	-0.44698313076835	-0.451735458312232	-0.455807707016715	-1.47303757300298	0.582784000060011	1
Merged-chr12-4548822-4	chr12	4548725	4548925	+	911.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24712.0	NR_136891	102634330.0	Mm.402324	NR_136891	ENSMUSG00000112422	Gm31938	-	predicted gene, 31938	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-50906165-2	chr9	50906065	50906265	+	576.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178710, intron 9 of 15)	intron (NM_178710, intron 9 of 15)	49241.0	NM_001286553	73699.0	Mm.7726	NM_028614	ENSMUSG00000032058	Ppp2r1b	2410091N08Rik|AI790395	protein phosphatase 2, regulatory subunit A, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6944245-2	chr19	6944145	6944345	+	851.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285453, intron 2 of 3)	B3A|SINE|B2	1683.0	NM_001285453	12015.0	Mm.4387	NM_007522	ENSMUSG00000024959	Bad	AI325008|Bbc2	BCL2-associated agonist of cell death	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-59185485-4	chr6	59185386	59185586	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23384.0	NM_001081145	68140.0	Mm.25843	NM_001081145	ENSMUSG00000049232	Tigd2	3632410O17Rik	tigger transposable element derived 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-183321937-2	chr1	183321837	183322037	+	642.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_181732, intron 8 of 9)	B4A|SINE|B4	-24644.0	NR_151660	71678.0	Mm.392270	NM_027861	ENSMUSG00000046836	Brox	0610010K06Rik	BRO1 domain and CAAX motif containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31130109-2	chr14	31130009	31130209	+	622.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1179.0	NM_001308464	66487.0	Mm.379116	NM_001308091	ENSMUSG00000058351	Smim4	2010107H07Rik|Gm41122	small integral membrane protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-134202229-4	chr1	134202176	134202376	+	844.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001291930, exon 2 of 2)	3' UTR (NM_001291930, exon 2 of 2)	8828.0	NM_016749	53311.0	Mm.379067	NM_016749	ENSMUSG00000042451	Mybph	AI385643|MyBP-H	myosin binding protein H	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-78226443-4	chr12	78226333	78226533	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145965)	promoter-TSS (NM_145965)	-222.0	NM_172952	268566.0	Mm.341742	NM_145965	ENSMUSG00000047454	Gphn	5730552E08Rik|AI662856|BC027112|C230040D23|GPH|GPHRYN|geph	gephyrin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-128268118-4	chr8	128268026	128268226	+	989.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10099.0	NR_105822	102465212.0		NR_105822	ENSMUSG00000099326	Mir21c	Gm28013|mmu-mir-21c	microRNA 21c	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-68392746-4	chr8	68392630	68392830	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172753, intron 5 of 9)	intron (NM_172753, intron 5 of 9)	24271.0	NR_038181	73609.0	Mm.443247	NR_038181	ENSMUSG00000085197	1700125H03Rik	4930510D22Rik	RIKEN cDNA 1700125H03 gene	ncRNA	3.57319032801806	3.21343615883894	3.40921167179116	3.12179803287149	3.82202912551281	3.64099912332346	3.75376168653805	3.83464477453531	0.643971725049301	0.206432018988205	0.694292103481728
Merged-chr4-40279442-4	chr4	40279334	40279534	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033305)	promoter-TSS (NM_001033305)	-13.0	NM_001033305	230075.0	Mm.1103	NM_001033305	ENSMUSG00000071014	Ndufb6	CI-B17|Gm137	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-114292130-4	chr7	114292027	114292227	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16011.0	NM_011965	26440.0	Mm.121265	NM_011965	ENSMUSG00000030751	Psma1	C2|HC2|Pros-30|alpha-type	proteasome (prosome, macropain) subunit, alpha type 1	protein-coding	2.17621387335898	2.66018339742052	2.5653907917876	2.78733781083105	1.981321842706	1.23029018061422	1.19781178451878	1.4222044402456	-2.7779813487548	0.00689912286745471	0.0844649756772669
Merged-chr5-30775232-4	chr5	30775135	30775335	+	910.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023047, intron 2 of 12)	(CCCCAG)n|Simple_repeat|Simple_repeat	-39406.0	NM_133350	100732.0	Mm.332295	NM_133350	ENSMUSG00000029166	Mapre3	AI790651|EB2|EB3|EBF3|RP3	microtubule-associated protein, RP/EB family, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191122034-3	chr1	191121885	191122085	+	835.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	23571.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46045912-4	chr19	46045832	46046032	+	946.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113408)	promoter-TSS (NM_001113408)	-621.0	NM_001113408	16825.0	Mm.327442	NM_010697	ENSMUSG00000025223	Ldb1	CLIM2|NLI	LIM domain binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-77019709-1	chr16	77019609	77019809	+	622.5	f0_balb.idr	intron (NM_013918, intron 1 of 23)	intron (NM_013918, intron 1 of 23)	5640.0	NM_013918	30940.0	Mm.40986	NM_013918	ENSMUSG00000022867	Usp25	-	ubiquitin specific peptidase 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-54970144-3	chr18	54970019	54970219	+	629.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175751, intron 2 of 9)	intron (NM_175751, intron 2 of 9)	20061.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-9094345-4	chr13	9094255	9094455	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172585, intron 1 of 17)	(CGGGG)n|Simple_repeat|Simple_repeat	474.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-137876220-2	chr5	137876120	137876320	+	545.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4462.0	NM_001024932	545812.0	Mm.332769	NM_001024932	ENSMUSG00000066682	Pilrb2	EG545812	paired immunoglobin-like type 2 receptor beta 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-96181550-4	chr10	96181435	96181635	+	902.133301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2c|LINE|L2	-44672.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133188242-3	chr4	133188187	133188387	+	583.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153423, intron 4 of 8)	intron (NM_153423, intron 4 of 8)	-7368.0	NR_105984	102466215.0		NR_105984	ENSMUSG00000099202	Mir7017	Gm27945|mmu-mir-7017	microRNA 7017	ncRNA	-0.204894211893265	-0.189071528166457	0.590833131628911	-0.198239698879843	-0.203902857595951	0.0168775141847448	0.286513124232227	-0.197540721532053	-0.509951910704782	0.829507675932134	1
Merged-chr4-82859658-4	chr4	82859541	82859741	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026647)	promoter-TSS (NM_026647)	32.0	NR_149737	68268.0	Mm.32047	NM_026647	ENSMUSG00000028403	Zdhhc21	9130404H11Rik|AL024349|D130004H04Rik|dep	zinc finger, DHHC domain containing 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-62810790-3	chr9	62810691	62810891	+	689.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010193, intron 1 of 1)	intron (NM_010193, intron 1 of 1)	857.0	NM_010193	14155.0	Mm.24069	NM_010193	ENSMUSG00000032244	Fem1b	mKIAA0396	feminization 1 homolog b (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43251489-1	chr4	43251389	43251589	+	600.0	f1_c57bl6.idr	intron (NM_001081413, intron 26 of 39)	intron (NM_001081413, intron 26 of 39)	-15670.0	NM_177195	320571.0	Mm.74465	NM_177195	ENSMUSG00000028457	Atp8b5	4930417M19Rik|Feta	ATPase, class I, type 8B, member 5	protein-coding	0.968553383863959	1.93381718860052	2.24893762538588	2.00947662281532	1.17337517252292	1.49718486653187	1.75371816011833	1.22192986886306	-1.38275547695326	0.237115190232505	0.733808141787246
Merged-chr16-45742912-4	chr16	45742812	45743012	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001272070)	promoter-TSS (NM_001272070)	43.0	NM_001272070	213012.0	Mm.247453	NM_172511	ENSMUSG00000033157	Abhd10	-	abhydrolase domain containing 10	protein-coding	6.07445477314191	6.11526612083115	6.61531984070713	5.60468392077863	6.1134171085503	5.57143059299221	6.1095102749501	6.03530023221626	-0.182462139307193	0.481711462839297	0.92959052077191
Merged-chr16-38321583-4	chr16	38321490	38321690	+	796.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081025, intron 8 of 16)	intron (NM_001081025, intron 8 of 16)	20270.0	NM_001081025	320214.0	Mm.294342	NM_177104	ENSMUSG00000022805	Maats1	4932425I24Rik|Aat1|CFAP91|Spata26	MYCBP-associated, testis expressed 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-61613121-1	chr5	61613021	61613221	+	879.0	f1_balb.idr	Intergenic	RMER13B|LTR|ERVK	-195722.0	NM_019468	14380.0	Mm.347430	NM_019468	ENSMUSG00000089992	G6pd2	G6pdx-ps1|Gpd-2|Gpd2	glucose-6-phosphate dehydrogenase 2	protein-coding	0.499566064540455	0.703070722538743	-0.192626684009914	-0.197306317989605	-0.203968175501102	-0.185250492702842	-0.191294031579503	-0.196486765584286	-3.99558501372725	0.0960389951741383	1
Merged-chr3-88638701-1	chr3	88638601	88638801	+	630.0	f1_c57bl6.idr	intron (NM_001198913, intron 12 of 21)	B1_Mm|SINE|Alu	14441.0	NM_181817	242093.0	Mm.269130	NM_181817	ENSMUSG00000049741	Rxfp4	GPCR142|Gpr100|Rln3r2|SALPR	relaxin family peptide receptor 4	protein-coding	0.747653683527526	0.51131575430983	0.819577236429724	1.01577268654119	0.754440342506863	0.512937201888822	0.954423624717406	0.916937822167059	0.0518690887455388	0.973611362416461	1
Merged-chr11-94521467-4	chr11	94521365	94521565	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_170671)	promoter-TSS (NM_170671)	37.0	NM_170671	104601.0	Mm.84725	NM_170671	ENSMUSG00000039110	Mycbpap	4932408B01Rik|AMAP-1|AW125474	MYCBP associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-51701592-2	chr15	51701492	51701692	+	708.458374	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur2|LINE|L1	163869.0	NM_080635	68135.0	Mm.289800	NM_080635	ENSMUSG00000022312	Eif3h	1110008A16Rik|40kD|9430017H16Rik|EIF3-P40|EIF3-gamma|Eif3s3	eukaryotic translation initiation factor 3, subunit H	protein-coding	1.45275090727044	2.01147430616305	3.06648733391281	2.66925655747854	1.02159850221757	2.02813716429706	1.09645810652468	1.72867538103537	-2.24622077241532	0.0386406796096506	0.280238830500214
Merged-chr4-138454065-2	chr4	138454018	138454218	+	814.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1030.0	NM_025451	66259.0	Mm.41603	NM_025451	ENSMUSG00000046447	Camk2n1	1810006K23Rik|AI848599|AI891706	calcium/calmodulin-dependent protein kinase II inhibitor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-97297291-4	chr3	97297157	97297357	+	826.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69893.0	NM_029933	77578.0	Mm.226175	NM_029933	ENSMUSG00000038256	Bcl9	2610202E01Rik|8030475K17Rik|A330041G23Rik|Gm130	B cell CLL/lymphoma 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6870968-4	chr19	6870870	6871070	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER4A|LTR|ERVK	-12759.0	NM_001081291	78317.0	Mm.329596	NM_198008	ENSMUSG00000047810	Ccdc88b	2610041P08Rik|Ccdc88	coiled-coil domain containing 88B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-94385130-2	chr8	94385030	94385230	+	882.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	-1299.0	NM_001357205	64209.0	Mm.29151	NM_022331	ENSMUSG00000031770	Herpud1	Herp|Mifl|SUP	homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-24965695-3	chr13	24965584	24965784	+	597.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008156, intron 11 of 25)	ERVB7_2-LTR_MM|LTR|ERVK	22532.0	NM_008156	14756.0	Mm.291831	NM_008156	ENSMUSG00000021340	Gpld1	6330541J12Rik|AW546131	glycosylphosphatidylinositol specific phospholipase D1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-35272509-2	chr9	35272403	35272603	+	841.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028040, intron 3 of 6)	intron (NM_028040, intron 3 of 6)	4622.0	NM_028040	71989.0	Mm.273515	NM_028040	ENSMUSG00000032044	Rpusd4	2410001E19Rik	RNA pseudouridylate synthase domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-10495442-4	chr7	10495324	10495524	+	963.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009577)	promoter-TSS (NM_009577)	-43.0	NM_009577	22775.0	Mm.49441	NM_009577	ENSMUSG00000030393	Zik1	-	zinc finger protein interacting with K protein 1	protein-coding	3.71244335620715	3.0089083231761	3.71102148249123	2.54232438151269	3.83679473469137	3.37318079008156	2.92802961720637	3.4925809151282	0.177124473208958	0.768568462085178	0.998431161219273
Merged-chr16-70932993-1	chr16	70932893	70933093	+	587.0	f0_balb.idr	Intergenic	Intergenic	-198083.0	NR_040561	70972.0	Mm.399391	NR_040561		4931420L22Rik	-	RIKEN cDNA 4931420L22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-57799684-2	chr14	57799584	57799784	+	842.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009119, intron 2 of 3)	intron (NM_009119, intron 2 of 3)	1260.0	NR_037238	100526476.0		NR_037238	ENSMUSG00000092784	Mir3077	mir-3077|mmu-mir-3077	microRNA 3077	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191458471-4	chr1	191458365	191458565	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151615, intron 2 of 5)	B3|SINE|B2	6583.0	NR_151615	102634668.0		NR_151615		Gm32200	-	predicted gene, 32200	ncRNA	3.12706385250645	2.762741324323	2.65557229847411	4.75864000361798	3.40491375997103	3.22920101804791	4.56690930897307	4.08477657590785	0.384566289927834	0.552886380865418	0.959564390599126
Merged-chr17-45571506-2	chr17	45571308	45571508	+	745.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008302, intron 3 of 10)	intron (NM_008302, intron 3 of 10)	1853.0	NM_008302	15516.0	Mm.2180	NM_008302	ENSMUSG00000023944	Hsp90ab1	90kDa|AL022974|C81438|Hsp84|Hsp84-1|Hsp90|Hspcb	heat shock protein 90 alpha (cytosolic), class B member 1	protein-coding	-2.18375600819439	-2.15556918946382	-2.16409311609999	-2.17109492323169	-2.18177734563694	-2.01960173909294	-2.16216348594872	-2.16984160310277	0.759018020146679	0.829933115115583	1
Merged-chr10-60934511-4	chr10	60934419	60934619	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033616, intron 1 of 2)	intron (NR_033616, intron 1 of 2)	3613.0	NR_033616	73616.0	Mm.159038	NR_033616	ENSMUSG00000037247	Pldi	1700125F08Rik|Poldi	polymorphic derived intron containing	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-3978421-2	chr15	3978321	3978521	+	714.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_134099, intron 1 of 6)	B2_Mm2|SINE|B2	1152.0	NM_134099	106052.0	Mm.234191	NM_134099	ENSMUSG00000022184	Fbxo4	1700096C12Rik|AI851261|AW494535|Fbx4	F-box protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165982703-4	chr2	165982602	165982802	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9935.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-54038818-2	chr5	54038704	54038904	+	655.0	f0_balb.idr|f0_c57.idr	intron (NM_001081103, intron 1 of 11)	intron (NM_001081103, intron 1 of 11)	40281.0	NM_001081103	116873.0	Mm.265985	NM_054083	ENSMUSG00000039156	Stim2	-	stromal interaction molecule 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55896036-2	chr19	55895936	55896136	+	638.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001142924, intron 1 of 11)	intron (NM_001142924, intron 1 of 11)	715.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-75668598-2	chr7	75668498	75668698	+	825.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 10 of 36)	intron (NM_029332, intron 10 of 36)	-179740.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-4239549-1	chr8	4239449	4239649	+	745.0	f1_c57bl6.idr	promoter-TSS (NM_001291778)	promoter-TSS (NM_001291778)	-556.0	NM_001291783	26400.0	Mm.3906	NM_011944	ENSMUSG00000002948	Map2k7	5930412N11Rik|JNKK 2|Jnkk2|MAPKK 7|MEK 7|Mapkk7|Mek7|Mkk7|Prkmk7|sek2	mitogen-activated protein kinase kinase 7	protein-coding	0.30150273675735	0.991067982614143	1.14269275970817	0.894283956100696	0.303147336055683	0.329377788553931	0.519691375551557	0.313647350996462	-3.59151314624971	0.0562436855602376	1
Merged-chr8-126777599-1	chr8	126777499	126777699	+	563.0	f1_c57bl6.idr	Intergenic	Intergenic	-71421.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	-0.882737915087978	-0.870228400904546	-0.55126555509038	-0.348284664960173	-0.882184352590133	-0.867526913455748	-0.876117308256711	-0.878618780156801	-2.9898294800592	0.321895641750235	1
Merged-chr19-7340740-4	chr19	7340664	7340864	+	716.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080388, intron 1 of 16)	intron (NM_001080388, intron 1 of 16)	1096.0	NM_001080389	13728.0	Mm.258986	NM_007928	ENSMUSG00000024969	Mark2	EMK-1|Emk|Par-1|Par-1b	MAP/microtubule affinity regulating kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116101773-2	chr11	116101673	116101873	+	917.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8462.0	NM_001205081	217333.0	Mm.347770	NM_172570	ENSMUSG00000020773	Trim47	2210023F24Rik	tripartite motif-containing 47	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98002893-3	chr11	98002823	98003023	+	863.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001282977, exon 14 of 14)	exon (NM_001282977, exon 14 of 14)	-6750.0	NR_152188	217151.0	Mm.277896	NM_207231	ENSMUSG00000038352	Arl5c	Arl12|BC065791	ADP-ribosylation factor-like 5C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-16466570-2	chr3	16466470	16466670	+	625.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	283405.0	NM_172677	229096.0	Mm.23834	NM_172677	ENSMUSG00000047213	Ythdf3	9130022A11Rik	YTH domain family 3	protein-coding	0.934932786870068	1.46882583767778	0.351386241378502	0.341589353498204	0.3274152707246	1.48548540672123	0.354153257834179	0.343314334206079	-0.429691339213248	0.893193934307281	0.998431161219273
Merged-chr6-134873279-2	chr6	134873177	134873377	+	989.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001167694, intron 3 of 3)	B2_Mm2|SINE|B2	14508.0	NR_074084	14760.0	Mm.4787	NM_008157	ENSMUSG00000032641	Gpr19	-	G protein-coupled receptor 19	protein-coding	1.05793530797092	0.873323743341834	1.60998144285469	1.12758287538441	0.607015822507241	0.647054700592601	1.62645975896163	0.62319007929755	-0.880580286849077	0.567367114337206	0.962562732139494
Merged-chr16-31186694-2	chr16	31186594	31186794	+	768.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030138, intron 1 of 22)	intron (NM_030138, intron 1 of 22)	14544.0	NM_030138	78618.0	Mm.274646	NM_030138	ENSMUSG00000049076	Acap2	4832442G16|9530039J15Rik|CNT-B2|Centb2|mKIAA0041	ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-45563388-3	chr17	45563277	45563477	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357105)	promoter-TSS (NM_001357105)	-559.0	NM_001357105	73836.0	Mm.289716	NM_028662	ENSMUSG00000037089	Slc35b2	1110003M08Rik|AA407792|AI842275|PAPST1|Slc35b1	solute carrier family 35, member B2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-3559280-1	chr8	3559180	3559380	+	540.0	f1_balb.idr	Intergenic	Intergenic	-8718.0	NM_001024728	546049.0	Mm.358733	NM_001024728	ENSMUSG00000065952	C330021F23Rik	2610027C06Rik|Rps23r1|Rps23rg1	RIKEN cDNA C330021F23 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-61705810-4	chr9	61705718	61705918	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	208692.0	NM_018853	56040.0	Mm.3158	NM_018853	ENSMUSG00000007892	Rplp1	2410042H16Rik|Arpp1|C430017H15Rik	ribosomal protein, large, P1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10297499-2	chr19	10297399	10297599	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198114, intron 1 of 19)	intron (NM_198114, intron 1 of 19)	7378.0	NM_198114	269060.0	Mm.329718	NM_198114	ENSMUSG00000035735	Dagla	Nsddr	diacylglycerol lipase, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-8081019-4	chr14	8080901	8081101	+	997.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025938, intron 1 of 5)	intron (NM_025938, intron 1 of 5)	688.0	NM_025938	67053.0	Mm.210048	NM_025938	ENSMUSG00000023156	Rpp14	2610511E03Rik|AA682089	ribonuclease P 14 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-79846758-4	chr7	79846664	79846864	+	927.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008486, intron 1 of 20)	intron (NM_008486, intron 1 of 20)	1446.0	NM_008486	16790.0	Mm.4487	NM_008486	ENSMUSG00000039062	Anpep	AP-M|AP-N|Apn|Cd13|P150	alanyl (membrane) aminopeptidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-105131807-4	chr9	105131717	105131917	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029385)	promoter-TSS (NM_029385)	-12.0	NM_029385	75686.0	Mm.305810	NM_029385	ENSMUSG00000032565	Nudt16	2310041H06Rik|2810047L04Rik|2900006H04Rik|AI851783	nudix (nucleoside diphosphate linked moiety X)-type motif 16	protein-coding	4.22870537767356	3.85146209489971	4.59685224350883	4.87396544477564	3.86122930453518	3.08841432851835	3.24378093473461	4.582597534583	-0.801218710932334	0.109058084406286	0.517458039825974
Merged-chr16-57914788-1	chr16	57914688	57914888	+	656.0	f0_balb.idr	Intergenic	Lx8b|LINE|L1	-160051.0	NM_007739	12837.0	Mm.130388	NM_007739	ENSMUSG00000068196	Col8a1	Col8a-1	collagen, type VIII, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-62685492-2	chr17	62685392	62685592	+	644.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010109, intron 1 of 3)	intron (NM_010109, intron 1 of 3)	195825.0	NM_207654	13640.0	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-97836466-2	chr15	97836366	97836566	+	695.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001204280, intron 1 of 21)	intron (NM_001204280, intron 1 of 21)	-4699.0	NM_001204276	56233.0	Mm.384027	NM_019572	ENSMUSG00000022475	Hdac7	5830434K02Rik|HD7|HD7a|Hdac7a|mFLJ00062	histone deacetylase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-60624498-3	chr18	60624407	60624607	+	885.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177340)	promoter-TSS (NM_177340)	-202.0	NM_177340	104027.0	Mm.252321	NM_177340	ENSMUSG00000043079	Synpo	9030217H17Rik|9130229N11|9330140I15Rik|AW046661	synaptopodin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-43524644-4	chr19	43524527	43524727	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010324)	promoter-TSS (NM_010324)	-22.0	NM_010324	14718.0	Mm.19039	NM_010324	ENSMUSG00000025190	Got1	AI789014|Got-1|cAspAT|cCAT	glutamic-oxaloacetic transaminase 1, soluble	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-18473109-2	chr9	18473009	18473209	+	773.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028160, intron 1 of 7)	intron (NM_028160, intron 1 of 7)	450.0	NM_028935	72230.0	Mm.289689	NM_028160	ENSMUSG00000074500	Zfp558	1700007A21Rik|4932704I17Rik|Zfp558-ps	zinc finger protein 558	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-62962654-2	chr9	62962554	62962754	+	565.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019663, intron 1 of 13)	intron (NM_019663, intron 1 of 13)	18225.0	NM_019663	56469.0	Mm.431253	NM_019663	ENSMUSG00000032405	Pias1	2900068C24Rik|Ddxbp1|GBP	protein inhibitor of activated STAT 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-153975134-4	chr4	153975065	153975265	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007859)	promoter-TSS (NM_007859)	-84.0	NM_007859	13368.0	Mm.388918	NM_007859	ENSMUSG00000029027	Dffb	40kDa|5730477D02Rik|CAD|CPAN|DFF40|Didff	DNA fragmentation factor, beta subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167641215-2	chr2	167641115	167641315	+	576.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9210.0	NM_023230	66589.0	Mm.278783	NM_023230	ENSMUSG00000078923	Ube2v1	0610011J09Rik|AI256840|CROC-1|CROC1|D7Bwg1382e|UEV-1	ubiquitin-conjugating enzyme E2 variant 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-152138697-4	chr4	152138590	152138790	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207687, intron 4 of 15)	CpG	-2365.0	NM_207690	56226.0	Mm.264215	NM_019585	ENSMUSG00000028943	Espn	je	espin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-3744472-1	chr16	3744372	3744572	+	1000.0	f0_balb.idr	exon (NM_148924, exon 1 of 6)	exon (NM_148924, exon 1 of 6)	373.0	NM_148924	74120.0	Mm.29081	NM_148924	ENSMUSG00000022529	Zfp263	1200014J04Rik|AI326880|AU020888|NT2|mFPM315	zinc finger protein 263	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-63788222-4	chr11	63788087	63788287	+	959.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	134097.0	NM_018805	54710.0	Mm.274426	NM_018805	ENSMUSG00000070407	Hs3st3b1	3-OST-3B|3OST3B1|3Ost3b|AU041882|AW536289|Hs3st3b|m3-OST-3B	heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	protein-coding	-2.18308165884198	-2.15547475440471	-2.16382331017202	-2.1706810624505	-2.18114370519566	-2.15366558754311	-2.03057248461154	-2.16945352807143	0.759018020146679	0.829933115115583	1
Merged-chr10-83353980-4	chr10	83353835	83354035	+	863.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6286.0	NM_026579	28109.0	Mm.196210	NM_026579	ENSMUSG00000020255	D10Wsu102e	AI747614|C430041I18Rik	DNA segment, Chr 10, Wayne State University 102, expressed	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-96730568-4	chr7	96730466	96730666	+	911.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011858, intron 9 of 32)	intron (NM_011858, intron 9 of 32)	70983.0	NR_045874	791381.0	Mm.402112	NR_045874	ENSMUSG00000053049	Gm15413	-	predicted gene 15413	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-157373897-4	chr2	157373796	157373996	+	856.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026968, intron 1 of 2)	MARNA|DNA|TcMar-Mariner	6302.0	NM_026968	69161.0	Mm.228619	NM_026968	ENSMUSG00000063019	Manbal	1810024K12Rik|AI836500	mannosidase, beta A, lysosomal-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-92825398-4	chr16	92825312	92825512	+	988.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111022, intron 2 of 6)	intron (NM_001111022, intron 2 of 6)	662.0	NM_001111021	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19818559-4	chr7	19818437	19818637	+	918.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033601, intron 2 of 8)	intron (NM_033601, intron 2 of 8)	4218.0	NM_033601	12051.0	Mm.439658	NM_033601	ENSMUSG00000053175	Bcl3	AI528691|Bcl-3	B cell leukemia/lymphoma 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-92274657-4	chr13	92274542	92274742	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311120, intron 14 of 23)	intron (NM_001311120, intron 14 of 23)	-80141.0	NM_010049	13361.0	Mm.23695	NM_010049	ENSMUSG00000021707	Dhfr	8430436I03Rik|AA607882|AI662710|AW555094	dihydrofolate reductase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-83656352-1	chr8	83656252	83656452	+	631.0	f1_balb.idr	intron (NM_018771, intron 1 of 6)	RSINE1|SINE|B4	3674.0	NM_018771	67903.0	Mm.20945	NM_018771	ENSMUSG00000019433	Gipc1	GIPC|Glut1CIP|Rgs19ip1|Semcap1|TIP-2|TaxIP2	GIPC PDZ domain containing family, member 1	protein-coding	-0.50625982962456	-0.490026732499517	-0.495293622397497	-0.499390908534704	-0.189807857889937	0.536514787615615	-0.494127773663334	-0.498672966722469	3.80477985777108	0.137164104326813	1
Merged-chr10-120587431-3	chr10	120587349	120587549	+	779.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-110980.0	NM_010441	15364.0	Mm.157190	NM_010441	ENSMUSG00000056758	Hmga2	9430083A20Rik|HMGI-C|Hmgic|pg|pygmy	high mobility group AT-hook 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-121548268-4	chr3	121548153	121548353	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15909.0	NM_145394	213603.0	Mm.33062	NM_145394	ENSMUSG00000039865	Slc44a3	BC010552	solute carrier family 44, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-40723863-2	chr4	40723763	40723963	+	602.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_029594)	TTS (NR_029594)	933.0	NM_001164672	15502.0	Mm.27897	NM_008298	ENSMUSG00000028410	Dnaja1	HSJ-2|Hsj2|Nedd7	DnaJ heat shock protein family (Hsp40) member A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105614097-4	chr8	105613978	105614178	+	874.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081241, intron 1 of 21)	CpG	-1388.0	NR_035492	100316712.0		NR_035492	ENSMUSG00000089432	Mir1966	mir-1966|mmu-mir-1966	microRNA 1966	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-21548365-2	chr15	21548265	21548465	+	594.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001008420, intron 7 of 11)	Lx3C|LINE|L1	436913.0	NM_001008420	215654.0	Mm.300909	NM_001008420	ENSMUSG00000040452	Cdh12	Cdhb	cadherin 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-50696124-4	chr15	50695988	50696188	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310481, intron 4 of 5)	intron (NM_001310481, intron 4 of 5)	192961.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	3.61028028198276	3.63429445674828	4.09915195815043	3.20951104758763	3.98567154570291	3.83975700130785	4.29485211490154	4.44760701586436	0.689600600127793	0.143027579734514	0.5904731564462
Merged-chr6-72901095-2	chr6	72900995	72901195	+	549.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-1116.0	NM_019715	74287.0	Mm.29194	NM_019715	ENSMUSG00000055239	Kcmf1	1700094M07Rik|Debt91|Pmcf	potassium channel modulatory factor 1	protein-coding	1.2983419142015	1.12036680812004	1.85158361011923	0.867255868751846	1.42393530159516	0.897301993390276	1.66974561186003	1.61226864082593	0.320991488163581	0.806636809662096	0.998431161219273
Merged-chr3-88608977-2	chr3	88608861	88609061	+	676.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7246.0	NM_001198911	16800.0	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28442962-4	chr7	28442862	28443062	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039192, intron 3 of 6)	intron (NM_001039192, intron 3 of 6)	2025.0	NM_001039192	63986.0	Mm.194536	NM_022024	ENSMUSG00000060791	Gmfg	0610039G16Rik|2310057N07Rik|AI324845	glia maturation factor, gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-182368956-3	chr1	182368860	182369060	+	973.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27354.0	NM_175127	67948.0	Mm.30737	NM_175127	ENSMUSG00000047539	Fbxo28	4833428J17Rik|5730505P19Rik|D1Ertd578e|Fbx28|mKIAA0483	F-box protein 28	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-77300687-4	chr16	77300591	77300791	+	902.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28637.0	NR_015543	77994.0	Mm.394688	NR_015543	ENSMUSG00000090386	Mir99ahg	2810055G20Rik|D730043B02Rik	Mir99a and Mirlet7c-1 host gene (non-protein coding)	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-10724172-2	chr18	10724072	10724272	+	561.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	-1453.0	NM_144860	225164.0	Mm.21500	NM_144860	ENSMUSG00000024294	Mib1	DIP-1|E430019M12Rik|Mib|mKIAA1323	mindbomb E3 ubiquitin protein ligase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-31857449-2	chr17	31857331	31857531	+	687.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1627.0	NM_010831	17691.0	Mm.290941	NM_010831	ENSMUSG00000024042	Sik1	Hrt-20|Msk|Sik|Sik-1|Snf1lk	salt inducible kinase 1	protein-coding	0.409461214664531	-0.109634660836318	-0.114112358260806	-0.117556195115575	0.335113965278834	-0.108623118506257	-0.113126136938602	0.292593326976558	0.614199218036873	0.794637697492568	1
Merged-chr6-92092809-1	chr6	92092709	92092909	+	982.0	f0_balb.idr	5' UTR (NM_001347342, exon 1 of 15)	5' UTR (NM_001347342, exon 1 of 15)	376.0	NM_001347342	22026.0	Mm.87062	NM_011630	ENSMUSG00000005893	Nr2c2	TAK1|Tr4|mKIAA4145	nuclear receptor subfamily 2, group C, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-67382531-4	chr1	67382425	67382625	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3b|LINE|CR1	259498.0	NM_001080809	227231.0	Mm.343942	NM_001080809	ENSMUSG00000025991	Cps1	4732433M03Rik|CPS|D1Ucla3	carbamoyl-phosphate synthetase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34238914-3	chr17	34238835	34239035	+	969.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010389)	promoter-TSS (NM_010389)	30.0	NM_010389	15002.0	Mm.327358	NM_010389	ENSMUSG00000041538	H2-Ob	A-beta-2|A-beta2|H-2Ab|H-2I|H-2Ob|H2-Ab|H2-Ab2|H2-IAb2|Ob	histocompatibility 2, O region beta locus	protein-coding	4.16425690609683	4.05374549044184	3.25666505437098	3.76451110283842	2.56809413489537	2.90761360105715	2.94208934919786	3.44179420214822	-1.33000670139146	0.0194098213436405	0.175997555130228
Merged-chr14-104467370-2	chr14	104467270	104467470	+	646.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_011143, intron 1 of 2)	intron (NM_011143, intron 1 of 2)	629.0	NM_011143	18996.0	Mm.246550	NM_011143	ENSMUSG00000048349	Pou4f1	Brn-3|Brn-3.0|Brn3|Brn3.0|Brn3a|E130119J07Rik	POU domain, class 4, transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134172540-4	chr6	134172441	134172641	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 3 of 8)	MTD|LTR|ERVL-MaLR	136841.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	-0.29851967533512	-0.280228046987191	-0.286164170825214	0.190593488140071	-0.297362499772128	-0.27889725123131	-0.284850318977276	0.761685912774083	1.60516177728649	0.523060498349438	1
Merged-chr17-5975843-3	chr17	5975732	5975932	+	984.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001113353, exon 2 of 27)	exon (NM_001113353, exon 2 of 27)	246.0	NM_011523	20975.0	Mm.236068	NM_011523	ENSMUSG00000023805	Synj2	AI481647|SJ2|mKIAA0348	synaptojanin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122477064-2	chr8	122476964	122477164	+	836.416626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033142)	promoter-TSS (NM_001033142)	921.0	NR_152823	66965.0	Mm.482288	NM_153775	ENSMUSG00000049482	Ctu2	2310061F22Rik|C16orf84|Ncs2	cytosolic thiouridylase subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-44416198-3	chr13	44416089	44416289	+	975.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23538.0	NR_045489	69491.0	Mm.392410	NR_045489	ENSMUSG00000098144	1700029N11Rik	-	RIKEN cDNA 1700029N11 gene	ncRNA	0.959966336319901	1.10450449153829	0.582438607370136	1.23410595512052	1.07255658529657	1.11478048356205	0.584470156406192	0.576555854239058	-0.628362152231995	0.694014386444159	1
Merged-chr12-75853713-4	chr12	75853616	75853816	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005510, intron 1 of 115)	intron (NM_001005510, intron 1 of 115)	35398.0	NM_001005510	319565.0	Mm.26652	NM_001005510	ENSMUSG00000063450	Syne2	6820443O06Rik|AW546258|Cpfl8|D12Ertd777e|KASH2|NUA|Nesp2g|dice|mKIAA1011	spectrin repeat containing, nuclear envelope 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-165583735-4	chr1	165583638	165583838	+	987.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50803.0	NM_001001880	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5492120-2	chr19	5492020	5492220	+	665.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007687, intron 1 of 3)	B1_Mur4|SINE|Alu	1665.0	NM_007687	12631.0	Mm.329655	NM_007687	ENSMUSG00000056201	Cfl1	AA959946|Cof	cofilin 1, non-muscle	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-4725419-4	chr7	4725317	4725517	+	746.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177887)	promoter-TSS (NM_177887)	-166.0	NM_177887	330460.0	Mm.361851	NM_177887	ENSMUSG00000046456	Tmem150b	A630041N19|Tmem224	transmembrane protein 150B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-27661833-2	chr15	27661733	27661933	+	955.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198301, intron 4 of 6)	L1ME1|LINE|L1	19709.0	NM_001242424	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-132265395-4	chr2	132265302	132265502	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291040, intron 1 of 3)	intron (NM_001291040, intron 1 of 3)	2254.0	NM_138651	110911.0	Mm.284503	NM_138651	ENSMUSG00000058793	Cds2	5730450N06Rik|5730460C18Rik|AI854580|D2Wsu127e	CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-112616781-1	chr12	112616681	112616881	+	555.0	f1_c57bl6.idr	Intergenic	Intergenic	-3266.0	NM_007421	11565.0	Mm.3440	NM_007421	ENSMUSG00000011148	Adssl1	AI528595|Adss|Adss1	adenylosuccinate synthetase like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-23548841-4	chr17	23548727	23548927	+	985.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	tRNA-Arg-AGG|tRNA|tRNA	-1972.0	NR_126485	320020.0	Mm.445111	NR_126484		6330415G19Rik	-	RIKEN cDNA 6330415G19 gene	ncRNA	0.369273200082284	0.766011018883844	1.08735685602738	0.379747040121843	0.526821001187045	0.395905977058236	1.10047093948389	0.706136382115833	0.117163079352305	0.946247272298373	1
Merged-chr19-10275543-2	chr19	10275443	10275643	+	846.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198114, intron 1 of 19)	ID_B1|SINE|B4	29334.0	NM_198114	269060.0	Mm.329718	NM_198114	ENSMUSG00000035735	Dagla	Nsddr	diacylglycerol lipase, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-112801210-2	chr12	112801110	112801310	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7765.0	NM_145450	217887.0	Mm.186678	NM_145450	ENSMUSG00000037594	BC022687	AW050009|C130001I08Rik|Clba1|Flj20080	cDNA sequence BC022687	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-12922227-4	chr7	12922136	12922336	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009095)	promoter-TSS (NM_009095)	-75.0	NM_009095	20103.0	Mm.5291	NM_009095	ENSMUSG00000012848	Rps5	AA617411	ribosomal protein S5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-17176878-4	chr19	17176796	17176996	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181348, intron 10 of 19)	A-rich|Low_complexity|Low_complexity	162609.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-12106899-3	chr13	12106729	12106929	+	843.694458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_023868, exon 1 of 105)	5' UTR (NM_023868, exon 1 of 105)	116.0	NM_023868	20191.0	Mm.239871	NM_023868	ENSMUSG00000021313	Ryr2	9330127I20Rik|RYR-2	ryanodine receptor 2, cardiac	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-88284649-4	chr17	88284537	88284737	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-156067.0	NM_001355743	14236.0	Mm.112824	NM_180974	ENSMUSG00000034998	Foxn2	3230402J05Rik|6030465J18Rik|Fkh19|Foxn1|HTLF	forkhead box N2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-114078189-4	chr13	114078092	114078292	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172595, intron 4 of 4)	intron (NM_172595, intron 4 of 4)	73400.0	NR_045836	319803.0	Mm.386896	NM_177004	ENSMUSG00000114213	A430090L17Rik	-	RIKEN cDNA A430090L17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-31113007-4	chr6	31112903	31113103	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110471, intron 3 of 3)	(CA)n|Simple_repeat|Simple_repeat	-49910.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-35361195-2	chr3	35361095	35361295	+	634.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	304968.0	NR_040748	625963.0	Mm.251506	NR_040748	ENSMUSG00000105662	Gm6639	-	predicted gene 6639	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-35187682-4	chr9	35187568	35187768	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001177847, exon 7 of 7)	3' UTR (NM_001177847, exon 7 of 7)	-11681.0	NM_027030	69305.0	Mm.229110	NM_027030	ENSMUSG00000032040	Dcps	1700001E16Rik|AA408441	decapping enzyme, scavenger	protein-coding	3.89334359345986	3.88163851086342	4.08810510651038	3.97952095245136	4.5930765051	3.44382655214666	3.21036642015594	3.74135698456464	-0.114701256236594	0.819833988055254	0.998431161219273
Merged-chr9-120602942-4	chr9	120602862	120603062	+	942.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25631.0	NR_073359	76100.0	Mm.48212	NR_073359	ENSMUSG00000052658	5830454E08Rik	-	RIKEN cDNA 5830454E08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-27388566-4	chr14	27388462	27388662	+	951.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027871, intron 7 of 10)	intron (NM_027871, intron 7 of 10)	27173.0	NM_001289688	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-66405956-4	chr8	66405875	66406075	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175188, intron 5 of 7)	intron (NM_175188, intron 5 of 7)	19674.0	NM_001166375	72925.0	Mm.380457	NM_175188	ENSMUSG00000036469	March1	2900024D24Rik|BB085186	membrane-associated ring finger (C3HC4) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-41417114-4	chr8	41417000	41417200	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013522)	promoter-TSS (NM_013522)	18.0	NM_013522	14300.0	Mm.217312	NM_013522	ENSMUSG00000031590	Frg1	-	FSHD region gene 1	protein-coding	5.94214856184481	6.33924421552373	5.64947931705028	5.51582908093314	5.78013023481871	5.07181501689172	5.12305505485267	5.5139498357345	-0.540952843184531	0.0615894092727012	0.368492220306118
Merged-chr7-144908032-2	chr7	144907944	144908144	+	747.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7056.0	NM_001357868	72284.0	Mm.273049	NM_028184	ENSMUSG00000031072	Oraov1	2210010N10Rik|TAOS1	oral cancer overexpressed 1	protein-coding	2.02353453616678	1.9343046634823	1.99121679509849	1.1338406121741	2.04082511379152	2.07852159794576	2.0072377671753	1.13699305172364	0.143591189214129	0.89786526189703	0.998431161219273
Merged-chr17-29438932-2	chr17	29438858	29439058	+	621.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-52087.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	0.635279537316416	1.17666928018361	0.49271137059788	1.27698137887545	0.473856800704175	0.504896972735694	0.697358977000614	1.2862938059499	-0.690824867659815	0.677807935644736	0.994818437932722
Merged-chr10-60396997-2	chr10	60396897	60397097	+	572.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252635, intron 28 of 68)	RMER15-int|LTR|ERVL	-2729.0	NM_001164374	100302688.0	Mm.444135	NM_001164374	ENSMUSG00000090439	Gm17455	-	predicted gene, 17455	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-172342014-2	chr1	172341942	172342142	+	554.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039484, intron 1 of 1)	intron (NM_001039484, intron 1 of 1)	832.0	NM_001039484	16513.0	Mm.254563	NM_020269	ENSMUSG00000044708	Kcnj10	BIR10|BIRK-1|Kir1.2|Kir4.1	potassium inwardly-rectifying channel, subfamily J, member 10	protein-coding	1.88528177703766	1.68531895110425	1.91864190535458	1.98005500517548	1.89975230856851	1.69570470468567	1.93265217740042	1.98971443708864	0.0372115922883385	0.968921641997722	0.998431161219273
Merged-chr10-52382540-4	chr10	52382424	52382624	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199272)	promoter-TSS (NM_001199272)	-400.0	NM_001199272	94221.0	Mm.390258	NM_053187	ENSMUSG00000019861	Gopc	2210402P09Rik|AI844555|CAL|FIG|GOPC1|PIST	golgi associated PDZ and coiled-coil motif containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-81168202-1	chr7	81168102	81168302	+	720.0	f1_c57bl6.idr	intron (NM_001004184, intron 15 of 17)	intron (NM_001004184, intron 15 of 17)	-45602.0	NM_008803	18584.0	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	-0.363655162690713	-0.79913538308806	-0.80185454298967	-0.64949506854278	-0.551772361179867	-0.797053905429858	-0.801256146428104	-0.803577831919718	-1.16218136807813	0.684857038392925	1
Merged-chr12-117507911-2	chr12	117507811	117508011	+	771.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-8568.0	NM_175930	217944.0	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-77983709-4	chr11	77983616	77983816	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_174852, intron 1 of 14)	intron (NM_174852, intron 1 of 14)	900.0	NM_174852	268448.0	Mm.274329	NM_174852	ENSMUSG00000037791	Phf12	2410142K10Rik|F630045O13|PF1|mKIAA1523	PHD finger protein 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-20878937-2	chr9	20878837	20879037	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145154, intron 1 of 5)	intron (NM_145154, intron 1 of 5)	773.0	NM_145154	70726.0	Mm.34019	NM_145154	ENSMUSG00000038742	Angptl6	6330404E11Rik|AGF|ARP3|Arp5	angiopoietin-like 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-113740075-1	chr6	113739975	113740175	+	541.0	f1_c57bl6.idr	intron (NM_024206, intron 1 of 8)	intron (NM_024206, intron 1 of 8)	606.0	NM_024206	110379.0	Mm.29296	NM_024206	ENSMUSG00000030298	Sec13	1110003H02Rik|Sec13l1|Sec13r	SEC13 homolog, nuclear pore and COPII coat complex component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-149665567-3	chr4	149665462	149665662	+	967.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029837, intron 2 of 23)	intron (NM_001029837, intron 2 of 23)	-2246.0	NM_001164052	18707.0	Mm.229108	NM_008840	ENSMUSG00000039936	Pik3cd	2410099E07Rik|2610208K16Rik|AW545373|p110delta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-99336948-1	chr13	99336848	99337048	+	617.0	f1_balb.idr	intron (NM_026873, intron 3 of 9)	B4A|SINE|B4	7730.0	NM_026873	68927.0	Mm.276502	NM_026873	ENSMUSG00000021650	Ptcd2	1190005P08Rik	pentatricopeptide repeat domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-34272676-3	chr7	34272570	34272770	+	976.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172741, intron 1 of 12)	intron (NM_172741, intron 1 of 12)	12939.0	NM_172741	233103.0	Mm.491097	NM_172741	ENSMUSG00000066571	4931406P16Rik	AA553327|mKIAA0355	RIKEN cDNA 4931406P16 gene	protein-coding	1.85533734773333	1.27641596655574	2.45772322307968	2.08024523283133	2.19204828300061	1.28272666052107	2.47756562403558	2.48495912912982	0.502740440856976	0.626206162248962	0.980912176761026
Merged-chr11-5273037-4	chr11	5272951	5273151	+	897.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER21B|LTR|ERV1	-11441.0	NM_032396	84035.0	Mm.209989	NM_032396	ENSMUSG00000020393	Kremen1	AV002070|Kremen|Krm1	kringle containing transmembrane protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-72330574-2	chr8	72330455	72330655	+	847.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11493.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	3.02198179372821	2.96225625924001	1.20153582320667	2.11601094525006	2.13218100938479	1.24503426697	1.48483105654789	2.36017846804317	-1.384138262746	0.185230529029162	0.660896474398802
Merged-chr10-59221856-4	chr10	59221656	59221856	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172939)	promoter-TSS (NM_172939)	91.0	NM_001024911	103080.0	Mm.346842	NM_001024910	ENSMUSG00000019917	Sept10	4921515A04Rik|9430099J10Rik|AA408298|AI874685	septin 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-61115445-1	chr18	61115345	61115545	+	720.0	f1_c57bl6.idr	intron (NM_001037859, intron 7 of 21)	intron (NM_001037859, intron 7 of 21)	-2023.0	NR_105949	102466212.0		NR_105949	ENSMUSG00000098389	Mir6983	Gm27496|mmu-mir-6983	microRNA 6983	ncRNA	0.0688554700041064	-0.163939870293408	0.360672404888768	0.109589669166696	0.0749594458044071	-0.163022744407889	-0.167102392570724	-0.170565208102991	-2.03298160813712	0.37156191742728	1
Merged-chr4-7457642-4	chr4	7457561	7457761	+	967.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-103027.0	NR_040645	71510.0	Mm.410775	NR_040645	ENSMUSG00000086070	8430436N08Rik	-	RIKEN cDNA 8430436N08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25815460-2	chr7	25815360	25815560	+	734.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_028775, intron 1 of 8)	intron (NM_028775, intron 1 of 8)	1070.0	NM_028775	74134.0	Mm.275188	NM_028775	ENSMUSG00000040703	Cyp2s1	1200011C15Rik|AU041727|C79779	cytochrome P450, family 2, subfamily s, polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-56875424-3	chr18	56875331	56875531	+	956.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177115, intron 1 of 4)	MTD|LTR|ERVL-MaLR	50117.0	NM_177115	320253.0	Mm.312623	NM_177115	ENSMUSG00000032656	March3	6330411I15Rik|A530081L18Rik|AI843639|MARCH-III	membrane-associated ring finger (C3HC4) 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-74641761-3	chr15	74641665	74641865	+	800.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5447.0	NM_001177437	69439.0	Mm.263708	NM_001177437	ENSMUSG00000022603	Mroh4	1700016M24Rik	maestro heat-like repeat family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-28619089-3	chr2	28618986	28619186	+	954.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160406, intron 1 of 6)	intron (NM_001160406, intron 1 of 6)	2896.0	NM_008114	14582.0	Mm.373385	NM_008114	ENSMUSG00000026815	Gfi1b	Gfi-1B	growth factor independent 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43419230-6	chr4	43419131	43419331	+	804.486084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037709, intron 2 of 11)	intron (NM_001037709, intron 2 of 11)	9903.0	NM_177377	329831.0	Mm.454466	NM_177377	ENSMUSG00000042788	Fam166b	4833436C18Rik	family with sequence similarity 166, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-114912674-2	chr6	114912574	114912774	+	784.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356371, intron 2 of 5)	intron (NM_001356371, intron 2 of 5)	9147.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-34840479-3	chr1	34840390	34840590	+	796.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160236, intron 1 of 6)	intron (NM_001160236, intron 1 of 6)	2560.0	NM_174997	214469.0	Mm.120151	NM_174997	ENSMUSG00000037503	Fam168b	Mani|mKIAA4042	family with sequence similarity 168, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-40550947-2	chr12	40550847	40551047	+	618.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	104894.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100362723-4	chr11	100362662	100362862	+	818.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6621.0	NM_010404	15114.0	Mm.281700	NM_010404	ENSMUSG00000006930	Hap1	HAP-1	huntingtin-associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165328921-3	chr2	165328811	165329011	+	721.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2432.0	NM_207706	140579.0	Mm.35064	NM_080287	ENSMUSG00000017670	Elmo2	1190002F24Rik|CED-12	engulfment and cell motility 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-118312074-2	chr1	118311974	118312174	+	555.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011650)	promoter-TSS (NM_011650)	-728.0	NM_011650	22099.0	Mm.426637	NM_011650	ENSMUSG00000026374	Tsn	2610034C24Rik|AU040286|C3PO|TB-RBP	translin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150593994-4	chr4	150593917	150594117	+	987.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 12 of 22)	intron (NM_001085492, intron 12 of 22)	58157.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-25100864-1	chr12	25100764	25100964	+	1000.0	f0_c57.idr	Intergenic	CpG	-4772.0	NM_010496	15902.0	Mm.34871	NM_010496	ENSMUSG00000020644	Id2	AI255428|C78922|Idb2|bHLHb26	inhibitor of DNA binding 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-66813085-4	chr15	66812971	66813171	+	959.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009192, intron 1 of 8)	intron (NM_009192, intron 1 of 8)	18758.0	NM_001029841	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-87403390-2	chr12	87403290	87403490	+	662.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-15035.0	NM_011479	20773.0	Mm.565	NM_011479	ENSMUSG00000021036	Sptlc2	LCB2|LCB2a|Spt2	serine palmitoyltransferase, long chain base subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-35947544-4	chr13	35947523	35947723	+	751.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20283.0	NM_029628	76487.0	Mm.44745	NM_029628	ENSMUSG00000050423	Ppp1r3g	1600032L17Rik	protein phosphatase 1, regulatory (inhibitor) subunit 3G	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-35582940-4	chr5	35582855	35583055	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357020)	promoter-TSS (NM_001357020)	-79.0	NM_001357020	80911.0	Mm.291503	NM_030721	ENSMUSG00000029098	Acox3	BI685180|EST-s59|PCOX	acyl-Coenzyme A oxidase 3, pristanoyl	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-142764749-4	chr2	142764620	142764820	+	901.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355123, intron 12 of 26)	intron (NM_001355123, intron 12 of 26)	136744.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-145345704-2	chr1	145345604	145345804	+	549.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13B|LTR|ERVK	-570277.0	NM_022881	64214.0	Mm.253927	NM_022881	ENSMUSG00000026357	Rgs18	-	regulator of G-protein signaling 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-106151917-4	chr8	106151718	106151918	+	978.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357319, intron 1 of 5)	intron (NM_001357319, intron 1 of 5)	1464.0	NM_001357319	192654.0	Mm.284770	NM_133792	ENSMUSG00000031903	Pla2g15	ACS|C87498|LLPL|Lpla2|Lypla3	phospholipase A2, group XV	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-106099349-4	chr1	106099252	106099452	+	983.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	72172.0	NR_040630	626049.0	Mm.247410	NR_040630	ENSMUSG00000101583	Gm20753	-	predicted gene, 20753	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122285209-1	chr5	122285109	122285309	+	593.0	f0_c57.idr	intron (NM_177242, intron 1 of 5)	CpG	811.0	NM_177242	320717.0	Mm.489670	NM_177242	ENSMUSG00000038582	Pptc7	9130017A15Rik|AA672638|AI848390|TA-PP2C	PTC7 protein phosphatase homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-78576111-4	chr16	78575999	78576199	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252440, intron 1 of 4)	intron (NM_001252440, intron 1 of 4)	589.0	NM_001252438	67102.0	Mm.37332	NM_025967	ENSMUSG00000022864	D16Ertd472e	1700010I10Rik|2310009O17Rik|E330003K22Rik|Eurl	DNA segment, Chr 16, ERATO Doi 472, expressed	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-15576651-4	chr3	15576540	15576740	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1575.0	NM_001173460	668101.0	Mm.423523	NM_001173460	ENSMUSG00000095028	Sirpb1b	-	signal-regulatory protein beta 1B	protein-coding	5.19114882025544	4.8083012482555	5.30635869314271	5.52144075173055	4.71824667316488	5.84399726571513	4.47761674368488	3.78609966797284	-0.383838730399442	0.353023470583064	0.852914941614096
Merged-chr8-23256016-5	chr8	23255916	23256116	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020585, intron 1 of 4)	intron (NM_020585, intron 1 of 4)	1064.0	NM_020585	57437.0	Mm.196269	NM_020585	ENSMUSG00000015341	Golga7	AB041568|C130038N16Rik|GCP16|GOLGA3AP1|HSPC041|R75586	golgi autoantigen, golgin subfamily a, 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-68465061-4	chr10	68464950	68465150	+	951.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028491, intron 5 of 7)	intron (NM_028491, intron 5 of 7)	76825.0	NM_028491	73287.0	Mm.141830	NM_028491	ENSMUSG00000019945	Cabcoco1	1700040L02Rik	ciliary associated calcium binding coiled-coil 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-82376362-3	chr8	82376274	82376474	+	906.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008357, intron 2 of 7)	MLT2B3|LTR|ERVL	26212.0	NM_001254747	16168.0	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	-1.52696403314699	-1.49523967873556	-1.5048333853602	-1.51271394162622	-1.52473704212565	-1.49316068248889	-1.50266158046844	-1.06847079017215	2.01069003169785	0.564432837776867	1
Merged-chr12-84021840-2	chr12	84021740	84021940	+	957.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPLTR2a|LTR|ERVK	12338.0	NM_012006	26897.0	Mm.1978	NM_012006	ENSMUSG00000072949	Acot1	ACH2|CTE-1|CTE-I|Cte1|D12Ucla1	acyl-CoA thioesterase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-142361003-1	chr7	142360903	142361103	+	551.0	f1_c57bl6.idr	intron (NM_001347541, intron 2 of 2)	MLT1A|LTR|ERVL-MaLR	11256.0	NM_177265	320802.0	Mm.154486	NM_177265	ENSMUSG00000045777	Ifitm10	6330512M04Rik|AI848576|DSPA3	interferon induced transmembrane protein 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-34207290-4	chr10	34207143	34207343	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_172508, exon 1 of 6)	5' UTR (NM_172508, exon 1 of 6)	308.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123661767-4	chr5	123661671	123661871	+	906.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359224, intron 1 of 18)	PB1D7|SINE|Alu	22590.0	NM_019765	56430.0	Mm.241109	NM_019765	ENSMUSG00000049550	Clip1	1110007I12Rik|4631429H07Rik|AV017631|C81039|CLIP-170|CLIP170|CYLN1|Clip50|Rsn|mKIAA4046|restin	CAP-GLY domain containing linker protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-84167758-4	chr15	84167659	84167859	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_105816)	promoter-TSS (NR_105816)	-57.0	NM_054088	116939.0	Mm.390817	NM_054088	ENSMUSG00000041653	Pnpla3	Adpn	patatin-like phospholipase domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-21729257-3	chr11	21729156	21729356	+	976.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145425, intron 12 of 17)	intron (NM_145425, intron 12 of 17)	156975.0	NM_145425	216560.0	Mm.138090	NM_145425	ENSMUSG00000020319	Wdpcp	AV249152	WD repeat containing planar cell polarity effector	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-157445062-3	chr1	157444973	157445173	+	985.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13495.0	NM_001356418	226527.0	Mm.215960	NM_001033284	ENSMUSG00000033488	Cryzl2	-	crystallin zeta like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52536838-2	chr13	52536738	52536938	+	640.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6002.0	NM_001024474	68203.0	Mm.29362	NM_001024474	ENSMUSG00000047842	Diras2	2900052J15Rik|AI414999	DIRAS family, GTP-binding RAS-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-144401413-3	chr3	144401294	144401494	+	815.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	168822.0	NM_011828	23908.0	Mm.12863	NM_011828	ENSMUSG00000040151	Hs2st1	2OST|AW214369|Hs2st|mKIAA0448	heparan sulfate 2-O-sulfotransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97657480-3	chr11	97657429	97657629	+	728.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5883.0	NM_139311	246198.0	Mm.23685	NM_139311	ENSMUSG00000038437	Mllt6	AI315037|Af17	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 6	protein-coding	0.860686772823402	1.11649039648176	0.601653763505379	0.594726710255177	0.868038723335502	0.98316026029124	1.30373912726066	1.04110558657229	1.29119487149503	0.390282539789985	1
Merged-chr7-99990606-2	chr7	99990519	99990719	+	661.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10161.0	NM_175388	108937.0	Mm.323087	NM_175388	ENSMUSG00000058761	Rnf169	2900057K09Rik	ring finger protein 169	protein-coding	0.692873616790242	2.1731569551532	0.740922967040738	1.33858525121547	0.697525221444576	2.19281765946248	0.745838350245771	1.73845488359217	0.319921084073007	0.829366229254379	0.998431161219273
Merged-chr15-79834339-4	chr15	79834204	79834404	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028763)	promoter-TSS (NM_028763)	29.0	NM_001013360	504193.0	Mm.38438	NM_029079	ENSMUSG00000089837	Npcd	Cbx6-Nptxr	neuronal pentraxin chromo domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24344858-3	chr17	24344708	24344908	+	910.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001031621, intron 2 of 29)	intron (NM_001031621, intron 2 of 29)	2444.0	NM_001031621	381072.0	Mm.328842	NM_001031621	ENSMUSG00000035435	Abca17	-	ATP-binding cassette, sub-family A (ABC1), member 17	protein-coding	3.64925289786647	3.19545731853288	2.48603618618338	3.51745192087248	2.95633151687526	1.98082239984992	2.6543334342389	3.26705093762457	-0.832302497205157	0.228902520025765	0.72208302043938
Merged-chr11-78042072-2	chr11	78041972	78042172	+	586.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001284228, intron 1 of 11)	Charlie4a|DNA|hAT-Charlie	1765.0	NM_001284228	14252.0	Mm.130227	NM_008028	ENSMUSG00000061981	Flot2	AI573412|Esa|reggie-2	flotillin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-76949027-4	chr18	76948919	76949119	+	896.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361227, intron 1 of 6)	intron (NM_001361227, intron 1 of 6)	4635.0	NM_001361227	76987.0	Mm.236127	NM_029826	ENSMUSG00000025421	Hdhd2	0610039H12Rik|3110052N05Rik	haloacid dehalogenase-like hydrolase domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-84117579-4	chr11	84117486	84117686	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172562, intron 4 of 15)	ORR1D1|LTR|ERVL-MaLR	11982.0	NM_172562	217031.0	Mm.45159	NM_172562	ENSMUSG00000018651	Tada2a	AV319371|D030022J10Rik|Tada2l	transcriptional adaptor 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-39175996-2	chr3	39175896	39176096	+	555.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MMERVK10D3_I-int|LTR|ERVK	289056.0	NM_183221	329628.0	Mm.316210	NM_183221	ENSMUSG00000046743	Fat4	6030410K14Rik|9430004M15	FAT atypical cadherin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-173411195-2	chr1	173411073	173411273	+	611.25	f0_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9431.0	NM_001013779	383619.0	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	1.18167668816756	1.34336158471474	0.763474590292503	1.58144316388593	1.73387733578689	1.35472559282362	0.766478121388089	0.75473553394662	-0.0672467208987047	0.963239334113291	0.998431161219273
Merged-chr3-108573729-2	chr3	108573629	108573829	+	817.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025444, intron 2 of 3)	intron (NM_025444, intron 2 of 3)	2030.0	NM_025444	99730.0	Mm.24431	NM_025444	ENSMUSG00000048100	Taf13	1810004N01Rik|2010309N11Rik|AI847295|TAFII18	TATA-box binding protein associated factor 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119917249-3	chr11	119917173	119917373	+	956.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085498, intron 6 of 7)	intron (NM_001085498, intron 6 of 7)	3463.0	NM_001085498	208092.0	Mm.306673	NM_001085498	ENSMUSG00000025371	Chmp6	2400004G01Rik	charged multivesicular body protein 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-17544001-1	chr12	17543901	17544101	+	586.0	f1_c57bl6.idr	promoter-TSS (NM_013614)	promoter-TSS (NM_013614)	-872.0	NM_013614	18263.0	Mm.34102	NM_013614	ENSMUSG00000011179	Odc1	ODC	ornithine decarboxylase, structural 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-79618736-3	chr2	79618643	79618843	+	734.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16682.0	NM_080558	70599.0	Mm.272881	NM_080558	ENSMUSG00000027007	Ssfa2	5730488C15Rik|CS-1|CS1|KRAP|SPAG13|mKIAA1927	sperm specific antigen 2	protein-coding	-1.53362919331644	-1.50201671710775	-1.51157659084044	-1.08120497225282	-1.53141005593807	-1.49994505258991	-1.50941244497383	-1.51802371459528	-1.94474658522739	0.577200604274218	1
Merged-chr3-38460150-2	chr3	38460050	38460250	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001167883, intron 3 of 3)	intron (NM_001167883, intron 3 of 3)	24666.0	NM_001167883	99696.0	Mm.290937	NM_001033198	ENSMUSG00000044864	Ankrd50	AI662170|E430012K20Rik|mKIAA1223|mKIAA3019	ankyrin repeat domain 50	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97446770-2	chr6	97446670	97446870	+	991.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	12516.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141874963-4	chr4	141874864	141875064	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025994)	promoter-TSS (NM_025994)	-44.0	NM_025994	27984.0	Mm.395598	NM_025994	ENSMUSG00000040659	Efhd2	2600015J22Rik|AA408606|D4Wsu27e	EF hand domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-99028067-3	chr6	99027959	99028159	+	879.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001197321, intron 4 of 17)	intron (NM_001197321, intron 4 of 17)	239.0	NM_001197322	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-113918215-4	chr13	113918114	113918314	+	941.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172595, intron 1 of 4)	intron (NM_172595, intron 1 of 4)	123706.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-100948718-4	chr10	100948614	100948814	+	921.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-207079.0	NR_152765	102639396.0	Mm.404529	NR_152765		Gm35722	-	predicted gene, 35722	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-5508064-4	chr6	5507930	5508130	+	890.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11752.0	NM_013743	27273.0	Mm.235547	NM_013743	ENSMUSG00000019577	Pdk4	AV005916	pyruvate dehydrogenase kinase, isoenzyme 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-114618114-2	chr5	114618014	114618214	+	809.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40307.0	NM_022017	63873.0	Mm.266450	NM_022017	ENSMUSG00000014158	Trpv4	0610033B08Rik|OTRPC4|Trp12|VR-OAC|VRL-2|VROAC	transient receptor potential cation channel, subfamily V, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88401829-2	chr3	88401729	88401929	+	596.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025928, intron 1 of 4)	ORR1D1|LTR|ERVL-MaLR	8568.0	NM_001310605	67037.0	Mm.36715	NM_025928	ENSMUSG00000028066	Pmf1	2600009M07Rik|AL033286|AW060657	polyamine-modulated factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-103857144-3	chr14	103857070	103857270	+	725.344421	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12694.0	NM_001136061	13618.0	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-8494645-6	chr12	8494510	8494710	+	817.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5399.0	NM_007483	11852.0	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-108847720-3	chr8	108847609	108847809	+	993.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007496, intron 3 of 9)	intron (NM_007496, intron 3 of 9)	-89151.0	NR_037295	100526511.0		NR_037295	ENSMUSG00000093241	Mir3108	mir-3108|mmu-mir-3108	microRNA 3108	ncRNA	2.15934107189682	2.16736200551273	2.54012695434748	2.27475430433521	1.27685247784858	2.02829645412018	2.11178020202134	2.64620335540789	-0.425910565867656	0.64994684472459	0.985422869512088
Merged-chr17-35253367-2	chr17	35253314	35253514	+	924.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_019693, intron 10 of 10)	(TG)n|Simple_repeat|Simple_repeat	2125.0	NR_106169	102465886.0		NR_106169	ENSMUSG00000098269	Mir8094	Gm27513|mmu-mir-8094	microRNA 8094	ncRNA	1.00483681045383	1.0893532785556	1.84423668933365	1.6439866176323	1.70454388848605	1.58730247670118	2.48680532691907	2.61350883526011	2.05798165682991	0.0670961453430306	0.388773125479241
Merged-chr17-48192590-3	chr17	48192480	48192680	+	815.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25323.0	NM_178796	328830.0	Mm.470939	NM_178796	ENSMUSG00000043939	A530064D06Rik	Trem4|pdctrem	RIKEN cDNA A530064D06 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-102073640-2	chr5	102073540	102073740	+	710.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3719.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-75514455-4	chr10	75514355	75514555	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347201, intron 1 of 5)	MTE2a|LTR|ERVL-MaLR	2926.0	NM_175133	68778.0	Mm.29382	NM_175133	ENSMUSG00000033416	Gucd1	1110038D17Rik	guanylyl cyclase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-29670931-3	chr2	29670796	29670996	+	751.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054050, intron 1 of 23)	intron (NM_054050, intron 1 of 23)	51176.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-89146742-2	chr15	89146642	89146842	+	865.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_011161, exon 2 of 12)	exon (NM_011161, exon 2 of 12)	2864.0	NM_011161	19094.0	Mm.91969	NM_011161	ENSMUSG00000053137	Mapk11	P38b|Prkm11|Sapk2|Sapk2b|p38-2|p38beta|p38beta2	mitogen-activated protein kinase 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59719120-2	chr15	59719020	59719220	+	796.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	70466.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126483170-3	chr8	126483092	126483292	+	915.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8127.0	NM_001159907	212728.0	Mm.482479	NM_001159907	ENSMUSG00000090290	Tarbp1	Gm17296|Gm179	TAR RNA binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119489986-2	chr11	119489886	119490086	+	689.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153849, intron 1 of 3)	intron (NR_153849, intron 1 of 3)	1249.0	NR_153849	78439.0	Mm.440446	NR_153849	ENSMUSG00000109408	A930037H05Rik	Gm44935	RIKEN cDNA A930037H05 gene	ncRNA	-0.501796035533201	0.139110117102942	-0.493390582842328	0.0495687538010091	-0.501015189212223	-0.488377657939509	-0.492488009595812	-0.495997082908245	-3.51862483220824	0.19146640807655	1
Merged-chr3-149988037-2	chr3	149987937	149988137	+	554.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	713300.0	NR_040591	381482.0	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA	-1.07637186174354	-0.710584347346669	-1.20769886504504	-1.21655996976359	-1.22292325303089	-1.19457377095274	-1.20525683050782	-1.21497383625558	-2.53931642760192	0.437326703338958	1
Merged-chr1-82787575-4	chr1	82787493	82787693	+	896.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19137.0	NM_025453	66261.0	Mm.46325	NM_025453	ENSMUSG00000026149	Tm4sf20	1810018L02Rik	transmembrane 4 L six family member 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-13469534-3	chr9	13469462	13469662	+	722.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38201.0	NR_028271	18689.0	Mm.41972	NM_008835	ENSMUSG00000031802	Phxr4	Sp5	per-hexamer repeat gene 4	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-55367166-2	chr2	55367066	55367266	+	556.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR25B|LTR|ERVK	-68804.0	NM_001304810	16519.0	Mm.5127	NM_008426	ENSMUSG00000026824	Kcnj3	GIRK-1|GIRK1|Kcnf3|Kir3.1	potassium inwardly-rectifying channel, subfamily J, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-10327250-2	chr10	10327150	10327350	+	710.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	145064.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-46852428-3	chr1	46852336	46852536	+	834.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356416, intron 1 of 10)	intron (NM_001356416, intron 1 of 10)	1182.0	NM_001356416	227059.0	Mm.233889	NM_172653	ENSMUSG00000025986	Slc39a10	2900042E17Rik|5430433I10|Zip10|mKIAA1265	solute carrier family 39 (zinc transporter), member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107744317-4	chr9	107744225	107744425	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_148930, exon 21 of 25)	exon (NM_148930, exon 21 of 25)	26677.0	NM_148930	83486.0	Mm.259197	NM_148930	ENSMUSG00000032580	Rbm5	D030069N10Rik	RNA binding motif protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-156676373-4	chr1	156676272	156676472	+	940.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2033.0	NM_023141	30935.0	Mm.206737	NM_023141	ENSMUSG00000060519	Tor3a	Adir	torsin family 3, member A	protein-coding	3.07621432675684	1.53664348960922	3.39524767660014	2.65759606596081	2.30860383281046	3.24347827564255	2.00646310474779	2.95863636531891	-0.214162357008343	0.795537900966658	0.998431161219273
Merged-chr16-13409776-2	chr16	13409676	13409876	+	678.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153588, intron 14 of 14)	intron (NM_153588, intron 14 of 14)	-39747.0	NR_030549	100124432.0		NR_030549	ENSMUSG00000076972	Mir193b	Mir193|Mirn193b|mir-193b	microRNA 193b	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-97993707-2	chr16	97993607	97993807	+	777.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3608.0	NM_001362093	245305.0	Mm.148033	NM_001362093		B230307C23Rik	8030444G23Rik|EG245305	RIKEN cDNA B230307C23 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-126669011-1	chr3	126668911	126669111	+	735.0	f0_c57.idr	intron (NM_001025438, intron 2 of 18)	intron (NM_001025438, intron 2 of 18)	72060.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	1.12681406385094	0.991162553282353	0.459588883907185	0.452739474590092	1.14028864681887	1.00148020895775	0.4615392365432	0.453939127986423	0.0408616426312795	0.98173510665009	1
Merged-chr18-32354036-2	chr18	32353936	32354136	+	649.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23181.0	NM_001083334	30948.0	Mm.4383	NM_009668	ENSMUSG00000024381	Bin1	ALP-1|Amphl|BRAMP-2|SH3P9	bridging integrator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-35329925-4	chr12	35329843	35330043	+	840.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-135046.0	NR_030449	751520.0		NR_030449	ENSMUSG00000076253	Mir680-3	Mirn680-3	microRNA 680-3	ncRNA	3.56824151265061	3.08622742587647	3.66963593434392	3.2779195207034	2.86452942039234	1.76246216205812	3.62919760042155	3.82341069936231	-0.278969250065125	0.678580852275681	0.995044270582299
Merged-chr10-88715901-4	chr10	88715807	88716007	+	884.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15194.0	NM_001037166	237433.0	Mm.478763	NM_001037166		Gm4925	EG237433	predicted gene 4925	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-82942043-2	chr18	82941943	82942143	+	779.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177464, intron 1 of 5)	intron (NM_001177464, intron 1 of 5)	-21483.0	NR_033307	75853.0	Mm.420737	NR_033307		4930592I03Rik	-	RIKEN cDNA 4930592I03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-23081404-3	chr10	23081320	23081520	+	854.7333369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-261292.0	NM_011545	21412.0	Mm.16497	NM_011545	ENSMUSG00000045680	Tcf21	Pod-1|Pod1|bHLHa23|capsulin|epc|epicardin	transcription factor 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65359286-3	chr9	65359163	65359363	+	874.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_016688, exon 5 of 5)	3' UTR (NM_016688, exon 5 of 5)	-1797.0	NM_001111145	208080.0	Mm.291862	NM_001111145	ENSMUSG00000086228	Ubap1l	Gm514	ubiquitin-associated protein 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-84804603-1	chr18	84804503	84804703	+	1000.0	f0_balb.idr	Intergenic	Intergenic	-46735.0	NM_025797	109672.0	Mm.31018	NM_025797	ENSMUSG00000024646	Cyb5a	0610009N12Rik|Cyb5	cytochrome b5 type A (microsomal)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-33887692-4	chr2	33887584	33887784	+	825.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_175184, exon 1 of 10)	5' UTR (NM_175184, exon 1 of 10)	262.0	NM_175184	72543.0	Mm.254914	NM_175184	ENSMUSG00000038740	Mvb12b	2610200O14Rik|2610528K11Rik|AI414895|Fam125b	multivesicular body subunit 12B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-25614907-4	chr14	25614809	25615009	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 6 of 23)	intron (NM_183208, intron 6 of 23)	11396.0	NM_001309430	100188919.0	Mm.473810	NM_001309430		Gm45915	Israa	predicted gene, 45915	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-54521501-2	chr11	54521401	54521601	+	638.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-1344.0	NM_001252494	192786.0	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-7295459-3	chr19	7295403	7295603	+	784.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080390)	promoter-TSS (NM_001080390)	-56.0	NM_001080390	13728.0	Mm.258986	NM_007928	ENSMUSG00000024969	Mark2	EMK-1|Emk|Par-1|Par-1b	MAP/microtubule affinity regulating kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-57344170-4	chr17	57344065	57344265	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14521.0	NM_001355723	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27938542-4	chr17	27938454	27938654	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181413, intron 1 of 24)	intron (NM_181413, intron 1 of 24)	29248.0	NM_181413	224650.0	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-106498352-1	chr3	106498252	106498452	+	583.0	f0_c57.idr	intron (NM_001093754, intron 8 of 11)	intron (NM_001093754, intron 8 of 11)	12312.0	NM_028110	72121.0	Mm.14816	NM_028110	ENSMUSG00000027901	Dennd2d	2010308M01Rik|AI451421	DENN/MADD domain containing 2D	protein-coding	0.0672611940055652	-0.454963898662265	-0.458484834729273	-0.305308615741581	-0.464997722965991	-0.454168047046442	-0.457709628015402	-0.0507499922327094	-0.768031424253715	0.768690751184955	1
Merged-chr8-126869582-4	chr8	126869514	126869714	+	898.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20594.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-86163007-4	chr12	86162824	86163024	+	850.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001199843)	TTS (NM_001199843)	-6417.0	NR_046081	328136.0	Mm.312050	NR_046081	ENSMUSG00000097543	Gm805	-	predicted gene 805	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-13967475-4	chr10	13967390	13967590	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358782, intron 1 of 9)	CpG-904	1111.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-108444174-4	chr3	108444069	108444269	+	971.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011319, intron 1 of 11)	intron (NM_011319, intron 1 of 11)	1090.0	NM_011319	20226.0	Mm.28688	NM_011319	ENSMUSG00000068739	Sars	Sars1|Strs|serRS	seryl-aminoacyl-tRNA synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124093118-2	chr5	124093018	124093218	+	586.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019875, intron 1 of 11)	intron (NM_019875, intron 1 of 11)	2680.0	NM_019875	56325.0	Mm.254839	NM_019875	ENSMUSG00000029408	Abcb9	TAPL|mKIAA1520	ATP-binding cassette, sub-family B (MDR/TAP), member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-43868879-4	chr5	43868755	43868955	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007646)	promoter-TSS (NM_007646)	46.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	5.49575229837128	5.21298678078421	6.29786633854782	4.92553989462439	5.0626486351804	5.78420037459888	5.12878918111613	4.78634264731623	-0.401373321327867	0.256289132789433	0.755146614736646
Merged-chr12-35554434-3	chr12	35554352	35554552	+	989.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19463.0	NM_001314027	11622.0	Mm.341377	NM_013464	ENSMUSG00000019256	Ahr	Ah|Ahh|Ahre|In|bHLHe76	aryl-hydrocarbon receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-31168341-1	chr8	31168241	31168441	+	1000.0	f1_balb.idr	intron (NM_026453, intron 1 of 9)	intron (NM_026453, intron 1 of 9)	383.0	NM_026453	67920.0	Mm.289818	NM_026453	ENSMUSG00000031578	Mak16	2600016B03Rik|AI314911|Rbm13	MAK16 homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-71974925-4	chr1	71974825	71975025	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040454, intron 1 of 2)	intron (NR_040454, intron 1 of 2)	30270.0	NR_040454	71134.0	Mm.370574	NR_040454	ENSMUSG00000101848	4933417E11Rik	-	RIKEN cDNA 4933417E11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-19177611-2	chr10	19177511	19177711	+	885.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_038022, intron 1 of 1)	LTR101_Mam|LTR|ERVL	10373.0	NR_038022	100504265.0	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-39843716-2	chr17	39843617	39843817	+	1000.0	f0_balb.idr|f0_c57.idr	non-coding (NR_046233, exon 1 of 1)	non-coding (NR_046233, exon 1 of 1)	720.0	NR_046233	100861531.0		NR_046233		Rn45s	-	45S pre-ribosomal RNA	rRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-96363794-4	chr9	96363677	96363877	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357213)	promoter-TSS (NM_001357213)	-62.0	NM_001357213	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	0.0215730545271152	0.053650237712254	1.18533066526149	0.0353180272733715	0.023645593480073	0.0559304583826174	1.20295982217995	0.036739596264249	0.041119013485609	0.984943294117709	1
Merged-chr14-61682366-4	chr14	61682299	61682499	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028264)	promoter-TSS (NR_028264)	-26.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-46508389-3	chr4	46508294	46508494	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029077, intron 5 of 5)	intron (NM_029077, intron 5 of 5)	19065.0	NM_053179	94181.0	Mm.249349	NM_053179	ENSMUSG00000028334	Nans	4632418E04Rik|BB056474|Sas	N-acetylneuraminic acid synthase (sialic acid synthase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-27665277-2	chr15	27665177	27665377	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198301, intron 1 of 6)	intron (NM_198301, intron 1 of 6)	16265.0	NM_001242424	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-32246455-2	chr16	32246355	32246555	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001185162)	promoter-TSS (NM_001185162)	570.0	NM_173439	268882.0	Mm.256137	NM_173439	ENSMUSG00000035764	Fbxo45	2610017J04Rik|AI463119|BC026799	F-box protein 45	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-118465516-2	chr5	118465416	118465616	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-95203.0	NM_001347445	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-33892868-1	chr17	33892768	33892968	+	701.0	f1_c57bl6.idr	Intergenic	RLTR42-int|LTR|ERVK	-2235.0	NM_001195298	100502766.0	Mm.335713	NM_001195298	ENSMUSG00000079553	Kifc1	100042970|Gm4137|HSET|KNSL2|Kifc5a|Knsl2a|Tctex-7|Tctex-7A|Tctex7|Tctex7a	kinesin family member C1	protein-coding	0.99646324776571	1.09492934799337	2.53741589953581	2.53625298829319	1.59846016910186	2.1239436038013	2.55917331784474	1.0440874347035	-0.125132261294671	0.918077740262972	0.998431161219273
Merged-chr5-34238682-3	chr5	34238587	34238787	+	883.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001015039, intron 2 of 12)	L1M4|LINE|L1	49637.0	NM_001015039	231125.0	Mm.113388	NM_001015039	ENSMUSG00000037224	Zfyve28	9630058O20Rik|Gm146|mKIAA1643	zinc finger, FYVE domain containing 28	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19498498-3	chr7	19498407	19498607	+	802.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9824.0	NM_177692	232946.0	Mm.64557	NM_177692	ENSMUSG00000057667	Bloc1s3	BC043666|Blos3|E230011O18|rp	biogenesis of lysosomal organelles complex-1, subunit 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-51881952-3	chr13	51881855	51882055	+	910.3777470000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35280.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-40349836-4	chr10	40349736	40349936	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291816, intron 1 of 11)	CpG	528.0	NM_001291816	78334.0	Mm.200924	NM_198164	ENSMUSG00000038481	Cdk19	2700084L06Rik|AI845279|AW228747|CDK11|Cdc2l6|mKIAA1028	cyclin-dependent kinase 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-121388431-2	chr11	121388331	121388531	+	991.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_139147)	promoter-TSS (NM_139147)	-180.0	NM_139147	217371.0	Mm.281639	NM_139147	ENSMUSG00000025170	Rab40b	SEC4L|rar	Rab40B, member RAS oncogene family	protein-coding	1.48943186696091	1.19102513961025	2.18648798322975	0.926436662201413	1.5023595026771	1.19842423575164	1.6369444220833	1.45467748040236	-0.332809043497439	0.784287120268951	0.998431161219273
Merged-chr7-118119268-2	chr7	118119168	118119368	+	756.25	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_019419, exon 6 of 6)	3' UTR (NM_019419, exon 6 of 6)	-3121.0	NM_170669	267019.0	Mm.288212	NM_170669	ENSMUSG00000008683	Rps15a	A630031B11Rik	ribosomal protein S15A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-38484338-4	chr18	38484248	38484448	+	804.513916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	65441.0	NM_001355749	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-56717372-2	chr6	56717272	56717472	+	768.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030235, intron 1 of 15)	intron (NM_030235, intron 1 of 15)	2467.0	NM_030235	78937.0	Mm.105343	NM_030235	ENSMUSG00000029787	Avl9	5830411G16Rik|D730049P16Rik|mKIAA0241	AVL9 cell migration associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-50065167-3	chr18	50065113	50065313	+	838.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134131, intron 1 of 1)	intron (NM_134131, intron 1 of 1)	-11551.0	NR_155293	102635912.0	Mm.440627	NR_155293		C030005K06Rik	-	RIKEN cDNA C030005K06 gene	ncRNA	1.02365336625428	1.29659998179557	0.642325294661645	1.19989629328389	1.3947954739513	0.654314154084046	0.836154535955009	0.813661441473458	-0.446550164581907	0.764604941838372	0.998431161219273
Merged-chr10-57746460-4	chr10	57746363	57746563	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38460.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-129649132-3	chr7	129649032	129649232	+	909.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57269.0	NM_172255	207425.0	Mm.229323	NM_172255	ENSMUSG00000042055	Wdr11	2900055P10Rik|AW489876|Brwd2|mKIAA1351	WD repeat domain 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-103283232-2	chr4	103283132	103283332	+	669.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163494, intron 1 of 7)	intron (NM_001163494, intron 1 of 7)	7631.0	NM_027612	70941.0	Mm.158501	NM_027612	ENSMUSG00000028520	4921539E11Rik	-	RIKEN cDNA 4921539E11 gene	protein-coding	0.075958689572835	0.434509558030199	-0.178597177301115	-0.182232101940492	-0.187365295351169	-0.172819318288032	-0.17755766475155	0.352965467446881	-0.686209522871093	0.772855873729607	1
Merged-chr11-86570442-4	chr11	86570337	86570537	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13721.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-149891270-4	chr1	149891168	149891368	+	987.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008869, intron 5 of 17)	intron (NM_008869, intron 5 of 17)	31171.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36742906-2	chr18	36742806	36743006	+	766.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_028036)	TTS (NM_028036)	1681.0	NM_010885	17991.0	Mm.29867	NM_010885	ENSMUSG00000014294	Ndufa2	AV000592|B8|C1-B8|CI-B8	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-89744271-4	chr10	89744161	89744361	+	676.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029166)	promoter-TSS (NM_029166)	-730.0	NM_029166	75089.0	Mm.268922	NM_029166	ENSMUSG00000019951	Uhrf1bp1l	2010319N22Rik|4930506D01Rik|AA589495|C80672|E030041M21Rik|mKIAA0701	UHRF1 (ICBP90) binding protein 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-119358515-2	chr9	119358415	119358615	+	631.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359699, intron 1 of 17)	intron (NM_001359699, intron 1 of 17)	1134.0	NM_001359699	102448.0	Mm.219497	NM_001033209	ENSMUSG00000035769	Xylb	AI132223|AI327421	xylulokinase homolog (H. influenzae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-60158598-4	chr1	60158486	60158686	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	-22013.0	NM_173444	269198.0	Mm.205224	NM_173444	ENSMUSG00000073664	Nbeal1	2310076G13Rik|A530050O19Rik|A530083I02Rik|AI662228|ALS2CR17	neurobeachin like 1	protein-coding	2.69287010588036	2.07888107182833	2.61067620763908	2.41839215939987	2.42914668650266	2.44810595424216	3.31637020298518	3.01223922541174	0.769735458379102	0.30144276259071	0.802880775247153
Merged-chr11-49829606-3	chr11	49829498	49829698	+	864.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013529, intron 15 of 18)	intron (NM_013529, intron 15 of 18)	-17153.0	NM_001163671	26420.0	Mm.68933	NM_016961	ENSMUSG00000020366	Mapk9	AI851083|JNK2|Prkm9|p54aSAPK	mitogen-activated protein kinase 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-56334998-4	chr13	56334887	56335087	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27913.0	NR_046061	100038494.0	Mm.370447	NR_046061	ENSMUSG00000074885	Gm10782	-	predicted gene 10782	ncRNA	3.3744874392822	3.7031005894071	3.66253697246972	3.18940831845965	4.14827038533132	4.40301105424317	4.21721213220882	3.79865755613453	0.948311047177604	0.0445158217128087	0.303466380062658
Merged-chr17-50581390-3	chr17	50581327	50581527	+	790.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013880, intron 1 of 5)	URR1A|DNA|hAT-Charlie	71880.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	1.74459422562834	2.24755456692309	2.37272166562531	1.06975447527694	1.03383596078245	1.41321753092538	2.85532240124206	1.9908085617885	0.186560077054276	0.870928452610046	0.998431161219273
Merged-chr18-80651539-2	chr18	80651461	80651661	+	627.5	f0_balb.idr|f1_c57bl6.idr	intron (NM_198429, intron 7 of 9)	intron (NM_198429, intron 7 of 9)	56612.0	NM_001164111	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-65188026-4	chr3	65187916	65188116	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289450)	promoter-TSS (NM_001289450)	-87.0	NM_001289450	16497.0	Mm.316402	NM_010597	ENSMUSG00000027827	Kcnab1	Akr8a8|Kvbeta1.1|mKv(beta)1	potassium voltage-gated channel, shaker-related subfamily, beta member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-63178047-4	chr14	63177958	63178158	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360211)	promoter-TSS (NM_001360211)	-171.0	NM_001360211	14137.0	Mm.474432	NM_010191	ENSMUSG00000021273	Fdft1	SQS|SS	farnesyl diphosphate farnesyl transferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-156200208-3	chr4	156200080	156200280	+	857.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015783, intron 1 of 1)	URR1A|DNA|hAT-Charlie	638.0	NM_015783	100038882.0	Mm.4950	NM_015783	ENSMUSG00000035692	Isg15	G1p2|IGI15|IP17|Irfp|UCRP	ISG15 ubiquitin-like modifier	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-31356675-4	chr6	31356550	31356750	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42123.0	NR_040300	100503869.0	Mm.370532	NR_040300	ENSMUSG00000086212	Mkln1os	Gm13845	muskelin 1, intracellular mediator containing kelch motifs, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-43788564-4	chr5	43788479	43788679	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6430.0	NM_178729	242960.0	Mm.25794	NM_178729	ENSMUSG00000039753	Fbxl5	Fbl4|Fir4	F-box and leucine-rich repeat protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-53582024-3	chr17	53581925	53582125	+	921.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151733, intron 1 of 16)	intron (NR_151733, intron 1 of 16)	-2101.0	NM_001190846	18519.0	Mm.255025	NM_020005	ENSMUSG00000000708	Kat2b	A930006P13Rik|AI461839|AW536563|Pcaf|p/CAF	K(lysine) acetyltransferase 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-53571110-2	chr19	53571010	53571210	+	651.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER20C_Mm|LTR|ERVK	-29286.0	NM_007790	13006.0	Mm.14910	NM_007790	ENSMUSG00000024974	Smc3	Bamacan|Cspg6|HCAP|Mmip1|SMC-3|SmcD	structural maintenance of chromosomes 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-135651432-2	chr7	135651332	135651532	+	641.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001316681)	promoter-TSS (NM_001316681)	-467.0	NM_001316681	19267.0	Mm.945	NM_011212	ENSMUSG00000041836	Ptpre	PTPe|PTPepsilon|RPTPepsilon	protein tyrosine phosphatase, receptor type, E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-75781275-4	chr2	75781138	75781338	+	860.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50939.0	NM_172666	228061.0	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	4.04233622566932	4.39288702753334	3.68533826916019	4.72415119675168	3.90950801132179	4.09275274520298	4.34166315651989	4.74536196813981	0.0569013172014912	0.896625723044504	0.998431161219273
Merged-chr18-7868061-2	chr18	7867961	7868161	+	877.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001282093)	promoter-TSS (NM_001282093)	-771.0	NM_001282093	225131.0	Mm.204524	NM_153085	ENSMUSG00000024283	Wac	1110067P07Rik|A230035H12Rik|AI256735|AI256776|Wwp4	WW domain containing adaptor with coiled-coil	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34003714-2	chr17	34003614	34003814	+	787.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3367.0	NM_001347346	14972.0	Mm.422886	NM_001001892	ENSMUSG00000061232	H2-K1	H-2K|H-2K(d)|H2-K|K-f	histocompatibility 2, K1, K region	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-128357590-2	chr1	128357488	128357688	+	604.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008567, intron 1 of 16)	ID4_|SINE|ID	2117.0	NM_001313695	17219.0	Mm.4933	NM_008567	ENSMUSG00000026355	Mcm6	ASP-l1|D1Wsu22e|Mcmd6	minichromosome maintenance complex component 6	protein-coding	1.52166811679397	2.04879597793699	2.60720844481147	1.40203768705617	1.69271184537627	1.2196886784304	2.45458939093498	2.69012669314017	0.374735856562314	0.720425353319229	0.998431161219273
Merged-chr5-144789106-2	chr5	144789006	144789206	+	549.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081362, intron 13 of 70)	MTD|LTR|ERVL-MaLR	20314.0	NM_001081362	100683.0	Mm.273570	NM_001081362	ENSMUSG00000045482	Trrap	AI481500	transformation/transcription domain-associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115506624-4	chr5	115506538	115506738	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133915)	promoter-TSS (NM_133915)	-38.0	NM_011223	19303.0	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-50522803-4	chr9	50522721	50522921	+	934.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011220, intron 4 of 5)	intron (NM_011220, intron 4 of 5)	5820.0	NM_011220	19286.0	Mm.35856	NM_011220	ENSMUSG00000032067	Pts	PTPS	6-pyruvoyl-tetrahydropterin synthase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31593222-4	chr14	31593104	31593304	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15821.0	NM_009937	382864.0	Mm.239821	NM_009937	ENSMUSG00000057606	Colq	A130034K24Rik	collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16018513-6	chr7	16018351	16018551	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB8|LINE|L1	-18956.0	NM_001081418	243842.0	Mm.440249	NM_001081418	ENSMUSG00000070808	Bicra	Gltscr1	BRD4 interacting chromatin remodeling complex associated protein	protein-coding	2.87062056963852	2.07524943114426	2.53927980846109	2.35555028831823	1.25200583557841	1.37729362033335	3.00041152629957	2.75470253839146	-0.302195711450943	0.759225680778388	0.998431161219273
Merged-chr17-67223942-1	chr17	67223842	67224042	+	641.0	f0_c57.idr	intron (NM_001357625, intron 1 of 32)	L1MB5|LINE|L1	130517.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	2.22247782857385	2.77552281248095	2.59946628356251	2.25544765956442	1.81440679900218	1.47248557301506	1.16270844746684	1.13552376588999	-2.93753906978239	0.00582971077925768	0.075317519665686
Merged-chr10-30621273-2	chr10	30621173	30621373	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2907.0	NM_025798	66847.0	Mm.46218	NM_025798	ENSMUSG00000019791	Hint3	0610010I17Rik|AV009015|HINT-3|HINT-4|HINT4	histidine triad nucleotide binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-129970110-4	chr3	129969951	129970151	+	974.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001293644, exon 1 of 7)	exon (NM_001293644, exon 1 of 7)	155.0	NM_025779	66815.0	Mm.31056	NM_025779	ENSMUSG00000027994	Mcub	9030408N13Rik|Ccdc109b	mitochondrial calcium uniporter dominant negative beta subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-43354714-3	chr16	43354605	43354805	+	632.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181058, intron 2 of 6)	MTD|LTR|ERVL-MaLR	65491.0	NR_046026	626693.0	Mm.447083	NR_046026	ENSMUSG00000085499	Gm15713	-	predicted gene 15713	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180215245-4	chr1	180215154	180215354	+	944.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19234.0	NM_001359268	67426.0	Mm.38330	NM_023341	ENSMUSG00000026489	Coq8a	4632432J16Rik|AI462003|Adck3|Cabc1|mKIAA0451	coenzyme Q8A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-7827691-1	chr10	7827591	7827791	+	565.0	f1_c57bl6.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-4779.0	NM_172785	237256.0	Mm.140055	NM_172785	ENSMUSG00000039981	Zc3h12d	D730019B10Rik|TFL	zinc finger CCCH type containing 12D	protein-coding	-0.892251419657023	-1.01191804162483	-1.0231062749645	-1.02661578645729	-1.0292768998096	-1.00949350478729	-0.84923468722631	-0.610110057387673	1.7421143064587	0.558515091875706	1
Merged-chr18-61099958-4	chr18	61099871	61100071	+	791.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB5|LINE|L1	-5601.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-59522258-4	chr2	59522161	59522361	+	875.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37608.0	NM_029723	76747.0	Mm.275769	NM_029723	ENSMUSG00000026989	Dapl1	2310032F03Rik|EEDA	death associated protein-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-96430374-4	chr10	96430271	96430471	+	998.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-186630.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-96867422-2	chr11	96867322	96867522	+	893.375	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17029.0	NR_029562	387170.0		NR_029562	ENSMUSG00000065515	Mir152	Mirn152|mir-152|mmu-mir-152	microRNA 152	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-108984573-3	chr8	108984477	108984677	+	614.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	47717.0	NR_037295	100526511.0		NR_037295	ENSMUSG00000093241	Mir3108	mir-3108|mmu-mir-3108	microRNA 3108	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-83394341-2	chr7	83394241	83394441	+	703.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-190590.0	NM_177695	233424.0	Mm.486619	NM_177695	ENSMUSG00000038540	Tmc3	9030203A06	transmembrane channel-like gene family 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36668921-2	chr18	36668821	36669021	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025291, intron 2 of 4)	intron (NM_025291, intron 2 of 4)	1390.0	NM_001164406	24068.0	Mm.29058	NM_025291	ENSMUSG00000006050	Sra1	AA959952|Sra|Srap|Straa1|Strra1	steroid receptor RNA activator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-53944398-4	chr18	53944293	53944493	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152809, intron 10 of 12)	intron (NM_152809, intron 10 of 12)	82280.0	NM_152809	70425.0	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-34588369-4	chr19	34588299	34588499	+	923.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010501, exon 2 of 2)	3' UTR (NM_010501, exon 2 of 2)	4870.0	NM_010501	15959.0	Mm.426079	NM_010501	ENSMUSG00000074896	Ifit3	Ifi49|P49	interferon-induced protein with tetratricopeptide repeats 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-140140037-1	chr7	140139937	140140137	+	541.0	f1_c57bl6.idr	intron (NM_199301, intron 2 of 10)	intron (NM_199301, intron 2 of 10)	2473.0	NM_199301	212508.0	Mm.296088	NM_199301	ENSMUSG00000039018	Mtg1	Gm169|Gtpbp7	mitochondrial ribosome-associated GTPase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-74195196-4	chr5	74195103	74195303	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026878)	promoter-TSS (NM_026878)	-123.0	NM_026878	68939.0	Mm.293316	NM_026878	ENSMUSG00000049907	Rasl11b	1190017B18Rik	RAS-like, family 11, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-14534342-4	chr3	14534243	14534443	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163580, intron 1 of 18)	intron (NM_001163580, intron 1 of 18)	555.0	NM_001163580	71710.0	Mm.257449	NM_028915	ENSMUSG00000027550	Lrrcc1	1200008A14Rik|4932441F23Rik|AI195358|AI447421	leucine rich repeat and coiled-coil domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-117821060-1	chr12	117820960	117821160	+	577.0	f1_c57bl6.idr	Intergenic	Intergenic	-22801.0	NM_146040	217946.0	Mm.281149	NM_146040	ENSMUSG00000021175	Cdca7l	BC006933|JPO2	cell division cycle associated 7 like	protein-coding	2.28350159083631	1.15979033280533	1.11886579457793	2.54671143979029	0.810714722313759	0.888206490404647	1.81039215008026	1.09190475557671	-2.10418155803738	0.100674051457913	0.493995797759782
Merged-chr11-120142769-4	chr11	120142689	120142889	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361697, intron 1 of 15)	intron (NM_001361697, intron 1 of 15)	8562.0	NM_001361698	72055.0	Mm.253403	NM_024249	ENSMUSG00000061306	Slc38a10	1810073N04Rik	solute carrier family 38, member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-88142036-4	chr8	88141935	88142135	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172757, intron 4 of 14)	intron (NM_172757, intron 4 of 14)	3829.0	NR_106039	102465649.0		NR_106039	ENSMUSG00000099080	Mir7071	Gm27623|mmu-mir-7071	microRNA 7071	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-142879523-4	chr5	142879411	142879611	+	818.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033312, intron 3 of 4)	intron (NM_001033312, intron 3 of 4)	15727.0	NM_001033312	231863.0	Mm.89753	NM_001033312	ENSMUSG00000066640	Fbxl18	AI427077|B130019G13Rik|C330021B20Rik	F-box and leucine-rich repeat protein 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-7954205-4	chr8	7954109	7954309	+	923.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	706564.0	NM_010111	13642.0	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	-0.045040273324761	-0.0247242969195283	0.164340551972779	0.906298112112767	-0.0437577970035777	-0.0232424405291179	0.599655632695654	-0.0355585661489465	-1.01785980384821	0.646635169201135	1
Merged-chr10-57796290-4	chr10	57796150	57796350	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020561, intron 1 of 7)	intron (NM_020561, intron 1 of 7)	1706.0	NM_020561	57319.0	Mm.2379	NM_020561	ENSMUSG00000019872	Smpdl3a	0610010C24Rik|AI529588|ASM3A|ASML3|ASML3A	sphingomyelin phosphodiesterase, acid-like 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3688683-4	chr19	3688585	3688785	+	709.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2121.0	NM_008513	16973.0	Mm.274581	NM_008513	ENSMUSG00000024913	Lrp5	BMND1|HBM|LR3|LRP7|OPPG|mKIAA4142	low density lipoprotein receptor-related protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-86399524-4	chr1	86399411	86399611	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10150.0	NM_001319227	14767.0	Mm.389159	NM_010341	ENSMUSG00000026237	Nmur1	FM-3|Gpr66|NMU-R1|NMU1R|NmU-R	neuromedin U receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-61697136-5	chr14	61697019	61697219	+	957.849976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-14746.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	1.66680368247591	2.53622054559059	1.59178613038282	2.04654443792858	2.36827551030482	2.55493628782809	2.2494666456814	2.29330929323733	0.865631950934739	0.330424925208037	0.83197671091297
Merged-chr15-66577519-4	chr15	66577434	66577634	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081409)	promoter-TSS (NM_001081409)	-38.0	NM_001081409	239510.0	Mm.267473	NM_178718	ENSMUSG00000072501	Phf20l1	CGI-72|E130113K22Rik	PHD finger protein 20-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124097063-2	chr5	124096963	124097163	+	747.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-1265.0	NM_019875	56325.0	Mm.254839	NM_019875	ENSMUSG00000029408	Abcb9	TAPL|mKIAA1520	ATP-binding cassette, sub-family B (MDR/TAP), member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-52833281-2	chr5	52833181	52833381	+	984.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024213)	promoter-TSS (NM_024213)	-854.0	NM_024213	52206.0	Mm.272568	NM_024213	ENSMUSG00000029176	Anapc4	2610306D21Rik|APC4|D5Ertd249e	anaphase promoting complex subunit 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97316596-2	chr6	97316417	97316617	+	914.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 12 of 23)	intron (NM_145148, intron 12 of 23)	-63737.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	2.21482750479644	2.59336862160913	2.39228539006012	2.87771557829451	2.11249722079459	2.352701073705	2.41022591024912	2.55624189766951	-0.398975368358414	0.609194526027029	0.974982115154152
Merged-chr7-118175712-3	chr7	118175624	118175824	+	941.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001031814, intron 29 of 62)	L1ME1|LINE|L1	-46099.0	NM_019419	54208.0	Mm.29924	NM_019419	ENSMUSG00000030654	Arl6ip1	AIP-6|AL022945|ARMER|AU042858|Aip-1|Arl6ip|C85138|mKIAA0069	ADP-ribosylation factor-like 6 interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-79505677-2	chr15	79505577	79505777	+	981.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008427)	promoter-TSS (NM_008427)	-436.0	NM_008427	16520.0	Mm.39759	NM_008427	ENSMUSG00000044216	Kcnj4	IRK3|Kcnf2|MB-IRK3	potassium inwardly-rectifying channel, subfamily J, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-60374329-5	chr10	60374243	60374443	+	778.664978	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252635, intron 37 of 68)	intron (NM_001252635, intron 37 of 68)	-25383.0	NM_001164374	100302688.0	Mm.444135	NM_001164374	ENSMUSG00000090439	Gm17455	-	predicted gene, 17455	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-42394739-1	chr13	42394639	42394839	+	544.0	f0_balb.idr	Intergenic	Intergenic	93263.0	NM_010104	13614.0	Mm.14543	NM_010104	ENSMUSG00000021367	Edn1	ET-1|PPET1|preproET	endothelin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-69232143-2	chr17	69232043	69232243	+	615.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355736, intron 3 of 21)	intron (NM_001355736, intron 3 of 21)	45063.0	NR_045428	69750.0	Mm.439063	NR_045428	ENSMUSG00000100572	2410021H03Rik	-	RIKEN cDNA 2410021H03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19826009-2	chr7	19825913	19826113	+	734.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3258.0	NM_033601	12051.0	Mm.439658	NM_033601	ENSMUSG00000053175	Bcl3	AI528691|Bcl-3	B cell leukemia/lymphoma 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-52233337-4	chr1	52233253	52233453	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113383)	promoter-TSS (NM_001113383)	-121.0	NM_001113383	14660.0	Mm.398608	NM_001081081	ENSMUSG00000026103	Gls	6330442B14|AI314027|B230365M23Rik	glutaminase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-25805465-2	chr15	25805365	25805565	+	767.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001353142, intron 15 of 20)	intron (NM_001353142, intron 15 of 20)	31452.0	NM_001353141	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-74687422-4	chr15	74687323	74687523	+	876.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14853.0	NM_018790	11838.0	Mm.491310	NM_018790	ENSMUSG00000022602	Arc	Arc3.1|C86064|arg3.1|mArc	activity regulated cytoskeletal-associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-75005059-2	chr17	75004959	75005159	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019919)	promoter-TSS (NM_019919)	-470.0	NM_019919	268977.0	Mm.269747	NM_019919	ENSMUSG00000001870	Ltbp1	9430031G15Rik|9830146M04|Ltbp-1|Ltbp1L|TGF-beta1-BP-1|Tgfb|b2b1000Clo	latent transforming growth factor beta binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-145248053-2	chr6	145247989	145248189	+	757.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021284, intron 1 of 4)	intron (NM_021284, intron 1 of 4)	2142.0	NM_021284	16653.0	Mm.383182	NM_021284	ENSMUSG00000030265	Kras	AI929937|K-Ras|K-Ras 2|K-ras|Ki-ras|Kras-2|Kras2|c-K-ras|c-Ki-ras|p21B|ras	Kirsten rat sarcoma viral oncogene homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70433791-4	chr11	70433694	70433894	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145429, intron 1 of 14)	intron (NM_145429, intron 1 of 14)	1214.0	NM_001271358	216869.0	Mm.203747	NM_145429	ENSMUSG00000060216	Arrb2	AI326910|AW122872|Arr3	arrestin, beta 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-67729652-1	chr13	67729552	67729752	+	549.0	f1_c57bl6.idr	promoter-TSS (NM_145622)	promoter-TSS (NM_145622)	390.0	NR_027969	68271.0	Mm.145530	NM_026649		Zfp85os	4930441O14Rik	zinc finger protein 85, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53239072-4	chr4	53238973	53239173	+	972.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	-7123.0	NR_040665	78180.0	Mm.243847	NR_040665	ENSMUSG00000086947	4930522O17Rik	-	RIKEN cDNA 4930522O17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-7974224-2	chr14	7974124	7974324	+	713.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007870, intron 5 of 7)	intron (NM_007870, intron 5 of 7)	19958.0	NM_007870	13421.0	Mm.272258	NM_007870	ENSMUSG00000025279	Dnase1l3	DNasegamma|Dhp2|Lsd	deoxyribonuclease 1-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-82542341-2	chr11	82542241	82542441	+	615.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-91012.0	NR_033582	791422.0	Mm.341562	NR_033582	ENSMUSG00000069796	Gm11426	-	predicted gene 11426	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-120819487-2	chr4	120819387	120819587	+	889.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001048168, intron 1 of 9)	L3|LINE|CR1	-3774.0	NM_001357192	18046.0	Mm.318389	NM_008692	ENSMUSG00000032897	Nfyc	-	nuclear transcription factor-Y gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-107947832-4	chr13	107947712	107947912	+	880.775024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR83|LTR|ERVL	-57748.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	2.75121335282323	3.57370429927203	2.99051463358169	2.65821773058549	3.48459060379479	2.99563806749162	3.55903697300062	3.82090614794633	0.761253101124951	0.204232124901353	0.69167790036705
Merged-chr17-56935584-4	chr17	56935492	56935692	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022328)	promoter-TSS (NM_022328)	-204.0	NM_022328	64144.0	Mm.148748	NM_022328	ENSMUSG00000024212	Mllt1	AA407901|BAM11|ENL|LTG19	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-73474956-4	chr14	73474859	73475059	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35090.0	NM_026119	67381.0	Mm.282888	NM_026119	ENSMUSG00000022109	Med4	2410046H15Rik|DRIP36|HSPC126|TRAP36|Vdirp|Vdrip	mediator complex subunit 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-17556884-2	chr14	17556784	17556984	+	542.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-104076.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-98833199-4	chr12	98833128	98833328	+	983.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081191, intron 21 of 43)	intron (NM_001081191, intron 21 of 43)	62206.0	NM_001160108	75553.0	Mm.25549	NM_029334	ENSMUSG00000021012	Zc3h14	1010001P15Rik|1700016A15Rik|2700069A02Rik|AU014748	zinc finger CCCH type containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-19219618-4	chr3	19219570	19219770	+	700.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045575, exon 9 of 9)	non-coding (NR_045575, exon 9 of 9)	31375.0	NM_001356295	67472.0	Mm.45125	NM_026182	ENSMUSG00000027601	Mtfr1	1300002C08Rik|1700080D04Rik|2810026O10Rik|4930579E05Rik|Chppr|Fam54a2	mitochondrial fission regulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-113166972-2	chr6	113166872	113167072	+	784.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28412.0	NM_177763	269788.0	Mm.37943	NM_177763	ENSMUSG00000042873	Lhfpl4	1190004M23Rik|AI604880|B230384L07|mKIAA4027	lipoma HMGIC fusion partner-like protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80860419-4	chr7	80860348	80860548	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1660.0	NM_009553	22691.0	Mm.358645	NM_009553	ENSMUSG00000038797	Zscan2	Zfp-29|Zfp29	zinc finger and SCAN domain containing 2	protein-coding	-0.0695781641093283	-0.529060387720535	-0.532804047409069	-0.535689127023687	-0.539761214675813	-0.528215862699504	-0.531978763493427	0.100033006233288	0.581932091788181	0.836272156700989	1
Merged-chr4-75063502-2	chr4	75063402	75063602	+	734.599976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	214790.0	NM_025849	66928.0	Mm.24332	NM_025849	ENSMUSG00000028398	Dmac1	1700027K24Rik|3110001D03Rik|Tmem261	distal membrane arm assembly complex 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-87307062-2	chr17	87306962	87307162	+	807.857178	f1_balb.idr|f1_c57bl6.idr	intron (NM_028639, intron 4 of 19)	intron (NM_028639, intron 4 of 19)	24176.0	NM_028639	225049.0	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-136254902-2	chr3	136254812	136255012	+	686.333374	f1_balb.idr|f1_c57bl6.idr	exon (NM_001310749, exon 2 of 16)	exon (NM_001310749, exon 2 of 16)	71154.0	NM_001310749	242248.0	Mm.30832	NM_001033350	ENSMUSG00000037922	Bank1	A530094C12Rik|AI451642|AVIEF|BANK	B cell scaffold protein with ankyrin repeats 1	protein-coding	1.18711771675758	1.49928580629641	0.542356240061313	0.732758344409125	0.519243462307163	1.51457248286869	0.545040289998702	0.736789337187554	-0.571090829264804	0.721873669244788	0.998431161219273
Merged-chr11-102468789-2	chr11	102468689	102468889	+	705.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010575, intron 1 of 29)	PB1D10|SINE|Alu	1094.0	NM_010575	16399.0	Mm.26646	NM_010575	ENSMUSG00000034664	Itga2b	AI172977|CD41|CD41B|GpIIb|alphaIIb	integrin alpha 2b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-47834038-1	chr12	47833938	47834138	+	541.0	f1_balb.idr	Intergenic	GSAT_MM|Satellite|Satellite	-1015263.0	NM_021361	664883.0	Mm.247195	NM_021361	ENSMUSG00000021047	Nova1	9430099M15Rik|G630039L02|Nova-1	neuro-oncological ventral antigen 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-17760146-4	chr16	17760065	17760265	+	907.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145479, intron 1 of 6)	CpG	544.0	NM_001359068	224023.0	Mm.282807	NM_145479	ENSMUSG00000022750	Klhl22	2610318I18Rik|Kelchl	kelch-like 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44987519-2	chr7	44987419	44987619	+	964.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045266, intron 1 of 1)	RSINE1|SINE|B4	619.0	NR_045266	100502630.0	Mm.490013	NR_045266	ENSMUSG00000087138	Gm15545	-	predicted gene 15545	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44655843-3	chr9	44655722	44655922	+	723.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MYSERV6-int|LTR|ERVK	-17411.0	NM_001277851	58866.0	Mm.45380	NM_021481	ENSMUSG00000032098	Treh	2210412M19Rik	trehalase (brush-border membrane glycoprotein)	protein-coding	1.8183654561371	3.0198687115355	2.59109861043668	1.29485398203961	1.97424985320579	2.4869446801106	2.4018609587429	2.07589091437249	-0.243998348364754	0.79508650276533	0.998431161219273
Merged-chr18-84847310-2	chr18	84847210	84847410	+	860.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-4028.0	NM_025797	109672.0	Mm.31018	NM_025797	ENSMUSG00000024646	Cyb5a	0610009N12Rik|Cyb5	cytochrome b5 type A (microsomal)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-10882668-2	chr16	10882568	10882768	+	630.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	32129.0	NR_131135	545180.0	Mm.373756	NR_131135	ENSMUSG00000095369	Gm21859	-	predicted gene, 21859	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-27183093-2	chr14	27182993	27183193	+	790.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289686, intron 2 of 12)	MLT1A0|LTR|ERVL-MaLR	39100.0	NM_001289686	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-64753885-4	chr1	64753774	64753974	+	864.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16124.0	NM_022721	14367.0	Mm.150813	NM_022721	ENSMUSG00000045005	Fzd5	5330434N09Rik|AI427138|Fz-5|Fz5|mFz5	frizzled class receptor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-137290138-2	chr5	137290038	137290238	+	946.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001290010, exon 2 of 5)	exon (NM_001290010, exon 2 of 5)	1884.0	NM_001290010	11423.0	Mm.255464	NM_009599	ENSMUSG00000023328	Ache	-	acetylcholinesterase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-17402917-2	chr16	17402817	17403017	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001983, intron 1 of 54)	intron (NM_001001983, intron 1 of 54)	-3083.0	NM_023348	67474.0	Mm.271992	NM_023348	ENSMUSG00000022765	Snap29	1300018G05Rik|AI891940|AU020222|BB131856|Gs32	synaptosomal-associated protein 29	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99009011-3	chr15	99008914	99009114	+	942.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20877.0	NM_009448	22146.0	Mm.88212	NM_009448	ENSMUSG00000043091	Tuba1c	M[a]6|Tuba6	tubulin, alpha 1C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-54820200-2	chr12	54820100	54820300	+	606.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-24538.0	NM_026998	72183.0	Mm.28240	NM_026998	ENSMUSG00000005656	Snx6	2010006G21Rik|2610032J07Rik|2810425K19Rik|AU018928|C85963	sorting nexin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70129278-2	chr11	70129178	70129378	+	565.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1079.0	NM_145137	216864.0	Mm.222465	NM_145137	ENSMUSG00000040950	Mgl2	CD301b	macrophage galactose N-acetyl-galactosamine specific lectin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-75910474-3	chr3	75910381	75910581	+	845.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291069, intron 2 of 15)	intron (NM_001291069, intron 2 of 15)	46468.0	NM_175193	73124.0	Mm.249232	NM_175193	ENSMUSG00000034109	Golim4	3110027H23Rik|GIMPC|GPP130|Golph4|P138	golgi integral membrane protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-134214593-4	chr5	134214494	134214694	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359852, intron 13 of 14)	intron (NM_001359852, intron 13 of 14)	15031.0	NM_001286037	17969.0	Mm.425296	NM_010876	ENSMUSG00000015950	Ncf1	NCF-47K|NOXO2|Ncf-1|p47-phox|p47<phox>|p47phox	neutrophil cytosolic factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83079095-2	chr6	83078995	83079195	+	558.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_197992, intron 2 of 8)	intron (NM_197992, intron 2 of 8)	705.0	NM_197992	69837.0	Mm.12261	NM_197992	ENSMUSG00000069678	Pcgf1	2010002K04Rik|AU024121|Nspc1	polycomb group ring finger 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-32511634-2	chr6	32511534	32511734	+	939.666626	f1_balb.idr|f1_c57bl6.idr	intron (NR_040277, intron 1 of 1)	intron (NR_040277, intron 1 of 1)	493.0	NR_040277	319849.0	Mm.440860	NR_040277	ENSMUSG00000086763	Plxna4os1	B230378P21Rik	plexin A4, opposite strand 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-17026483-2	chr7	17026383	17026583	+	924.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011155, intron 1 of 12)	L2b|LINE|L2	1431.0	NM_011155	19060.0	Mm.3294	NM_011155	ENSMUSG00000003099	Ppp5c	AU020526|PP5	protein phosphatase 5, catalytic subunit	protein-coding	-1.53645105050735	-1.50512770740433	-1.51460014489938	-1.52238108709168	-1.25060007796668	-1.50307499068393	-1.36341110676307	-1.52098830215942	1.91856433096655	0.581453450570385	1
Merged-chr5-85992864-2	chr5	85992764	85992964	+	573.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	72719.0	NM_001345902	12617.0	Mm.4649	NM_007683	ENSMUSG00000029253	Cenpc1	CENP-C|Cenpc	centromere protein C1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-45118303-3	chr2	45118195	45118395	+	890.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355288)	promoter-TSS (NM_001355288)	-853.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-94647327-4	chr16	94647197	94647397	+	891.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113389, intron 2 of 11)	ORR1G|LTR|ERVL-MaLR	35878.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-35047703-2	chr9	35047621	35047821	+	861.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009178, intron 10 of 10)	intron (NM_009178, intron 10 of 10)	-69007.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	0.574372805410277	0.800833741580815	0.406424273995538	0.390938995607632	0.242198566057994	0.256902687804343	0.252064441715209	0.728439628470849	-1.21126013811037	0.518594854917231	1
Merged-chr14-21071877-2	chr14	21071777	21071977	+	838.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_134079, intron 1 of 10)	MIR3|SINE|MIR	-4275.0	NM_001243041	11534.0	Mm.188734	NM_134079	ENSMUSG00000039197	Adk	2310026J05Rik|5033405D03Rik|AI255373|AI987814|Ak	adenosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-31997057-4	chr12	31996973	31997173	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011158, intron 2 of 10)	MamRep605|LTR?|LTR?	-46828.0	NM_001361928	73389.0	Mm.390461	NM_153198	ENSMUSG00000002996	Hbp1	1700058O05Rik|BE629963|C330012F01Rik|C86454	high mobility group box transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-77444287-2	chr8	77444187	77444387	+	945.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_030113, intron 3 of 22)	intron (NM_030113, intron 3 of 22)	-72769.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-90197021-4	chr16	90196929	90197129	+	807.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23713.0	NM_011434	20655.0	Mm.276325	NM_011434	ENSMUSG00000022982	Sod1	B430204E11Rik|Cu/Zn-SOD|CuZnSOD|Ipo-1|Ipo1|SODC|Sod-1	superoxide dismutase 1, soluble	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-95533521-4	chr10	95533431	95533631	+	990.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080560, intron 1 of 3)	RLTR17|LTR|ERVK	18369.0	NM_080560	93765.0	Mm.371667	NM_080560	ENSMUSG00000074781	Ube2n	1500026J17Rik|AL022654|BB101821|UBC13	ubiquitin-conjugating enzyme E2N	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117254036-2	chr8	117253936	117254136	+	845.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2983.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-57904477-3	chr4	57904377	57904577	+	689.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11787.0	NM_178727	242484.0	Mm.23214	NM_178727	ENSMUSG00000052117	D630039A03Rik	-	RIKEN cDNA D630039A03 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24413829-4	chr17	24413744	24413944	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009070)	promoter-TSS (NM_009070)	669.0	NR_033554	654822.0	Mm.489806	NM_001039561	ENSMUSG00000073437	D330041H03Rik	-	RIKEN cDNA D330041H03 gene	ncRNA	1.39282829740502	1.50681280010841	1.44159625865034	0.637717308233957	0.622542053447761	1.5212233517202	0.651226687503978	0.6395688807886	-1.44728064356895	0.368189514835635	0.862916999449085
Merged-chr14-63117668-4	chr14	63117579	63117779	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-4783.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19086194-4	chr7	19086086	19086286	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_037282)	promoter-TSS (NR_037282)	-642.0	NR_037282	100526504.0		NR_037282	ENSMUSG00000092659	Mir3100	mir-3100|mmu-mir-3100	microRNA 3100	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-99005993-1	chr13	99005893	99006093	+	557.0	f0_balb.idr	Intergenic	L1ME3Cz|LINE|L1	-21428.0	NM_027064	69382.0	Mm.45466	NM_027064	ENSMUSG00000045022	1700024P04Rik	H2bl1|Subh2bv	RIKEN cDNA 1700024P04 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-50174786-4	chr11	50174706	50174906	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026543)	promoter-TSS (NM_026543)	-45.0	NM_026543	68067.0	Mm.40828	NM_026543	ENSMUSG00000020381	Mrnip	2900016G09Rik|3010026O09Rik|AI851514|AW475975	MRN complex interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122394092-4	chr5	122393988	122394188	+	892.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019824, intron 1 of 6)	B3A|SINE|B2	2210.0	NM_019824	56378.0	Mm.275942	NM_019824	ENSMUSG00000029465	Arpc3	1110006A04Rik|p21-ARC|p21-Ar|p21Arc	actin related protein 2/3 complex, subunit 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-165634593-4	chr1	165634491	165634691	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347128)	promoter-TSS (NM_001347128)	-50.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81628831-2	chr10	81628731	81628931	+	685.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027480, intron 1 of 19)	intron (NM_027480, intron 1 of 19)	291.0	NM_027480	70615.0	Mm.304382	NM_027480	ENSMUSG00000054708	Ankrd24	4631433D01Rik|5730519E19Rik|D10Bur2e	ankyrin repeat domain 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-115585818-4	chr8	115585714	115585914	+	892.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	121080.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45175046-2	chr7	45174946	45175146	+	973.833374	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_182993, exon 12 of 12)	3' UTR (NM_182993, exon 12 of 12)	1743.0	NR_106022	102465638.0		NR_106022	ENSMUSG00000106470	Mir7055	mmu-mir-7055	microRNA 7055	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-88706777-2	chr9	88706677	88706877	+	661.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359992, intron 2 of 2)	intron (NM_001359992, intron 2 of 2)	12810.0	NM_001359992	100039707.0	Mm.347377	NM_001128601	ENSMUSG00000079427	Mthfsl	Gm2382	5, 10-methenyltetrahydrofolate synthetase-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26229993-4	chr17	26229881	26230081	+	963.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001206335, intron 1 of 12)	intron (NM_001206335, intron 1 of 12)	14261.0	NM_207217	106581.0	Mm.28844	NM_207217	ENSMUSG00000024187	Fam234a	Itfg3	family with sequence similarity 234, member A	protein-coding	4.55505163902814	3.15700051757438	3.16735762830543	3.98862725638327	4.38008805929607	2.47226657859905	4.85242932583161	4.41554395559422	0.552155847139505	0.347386613372895	0.847509430458407
Merged-chr7-64038106-3	chr7	64037995	64038195	+	942.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-99180.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127165801-4	chr7	127165709	127165909	+	904.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27986.0	NM_001037810	20737.0	Mm.283714	NM_009259	ENSMUSG00000051457	Spn	A630014B01Rik|Cd43|Galgp|Ly-48|Ly48	sialophorin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71259921-2	chr17	71259820	71260020	+	1000.0	f0_balb.idr|f1_balb.idr	intron (NM_001357338, intron 4 of 7)	intron (NM_001357338, intron 4 of 7)	51091.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	4.20537304008568	4.11552836908355	4.67380247521453	2.96008364580454	6.08657436244725	6.22355029854098	6.36631875748224	6.7705778095559	2.61358390223193	9.34202759343331e-15	4.94495501761821e-12
Merged-chr13-21160873-4	chr13	21160763	21160963	+	947.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17808.0	NM_146534	258527.0	Mm.271440	NM_146534	ENSMUSG00000045474	Olfr1368	MOR256-15	olfactory receptor 1368	protein-coding	2.76246433123754	3.18624298108261	2.8981298115988	3.28770858868342	3.15118024562434	2.51500100597461	1.85850518175266	2.49425836366372	-0.837635323025106	0.246811188654327	0.746081649489815
Merged-chr14-70209531-2	chr14	70209431	70209631	+	590.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1860.0	NM_011366	20410.0	Mm.5068	NM_011366	ENSMUSG00000022091	Sorbs3	SCAM-1|SH3P3|Sh3d4|vinexin-g	sorbin and SH3 domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-120789342-1	chr5	120789242	120789442	+	543.0	f1_c57bl6.idr	intron (NM_001347450, intron 3 of 5)	B4A|SINE|B4	6188.0	NM_001347450	231699.0	Mm.379383	NM_145210	ENSMUSG00000066867	Oas1e	C87484|oasl7	2'-5' oligoadenylate synthetase 1E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-88820717-2	chr15	88820617	88820817	+	610.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029720, intron 3 of 9)	intron (NM_029720, intron 3 of 9)	1071.0	NM_029720	76737.0	Mm.292567	NM_029720	ENSMUSG00000023272	Creld2	5730592L21Rik|C85758	cysteine-rich with EGF-like domains 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45078673-3	chr7	45078531	45078731	+	764.43335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_025533)	TTS (NM_025533)	13582.0	NM_026555	52377.0	Mm.29997	NM_026555	ENSMUSG00000019539	Rcn3	6030455P07Rik|D530026G20Rik|D7Ertd671e|RLP49	reticulocalbin 3, EF-hand calcium binding domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166357964-2	chr2	166357864	166358064	+	567.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	84056.0	NR_033467	670775.0	Mm.384326	NR_033467	ENSMUSG00000084840	Gm11468	-	predicted gene 11468	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134144908-3	chr6	134144815	134145015	+	803.722229	f0_balb.idr|f0_c57.idr|f1_balb.idr	intron (NM_001303102, intron 3 of 8)	ORR1F|LTR|ERVL-MaLR	109215.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	2.37158831028422	2.35265789955036	3.64581127276082	2.96422376190752	3.34186729462652	1.62090028481344	2.97590192593716	3.72650434806342	0.294086550636419	0.706348004432765	0.998431161219273
Merged-chr18-34963641-4	chr18	34963537	34963737	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9286.0	NM_010481	15526.0	Mm.209419	NM_010481	ENSMUSG00000024359	Hspa9	74kDa|Csa|Grp75|Hsc74|Hsp74|Hsp74a|Hspa9a|Mortalin|Mot-2|Mot2|Mthsp70|Pbp74	heat shock protein 9	protein-coding	2.15747714308733	2.33360046278938	2.64264187938433	3.12577380443838	1.51032612888829	1.17833763455251	1.14411376445791	1.59257356061392	-3.42306993811103	0.00151278882855991	0.0271984620855072
Merged-chr11-96985975-2	chr11	96985875	96986075	+	751.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8287.0	NM_001080964	78912.0	Mm.491183	NM_030220	ENSMUSG00000018678	Sp2	4930480I16Rik|mKIAA0048	Sp2 transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-94687380-4	chr11	94687276	94687476	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9883.0	NM_145828	217119.0	Mm.100638	NM_145828	ENSMUSG00000020868	Xylt2	E030002B02Rik|XT-II|XT2|xylT-II	xylosyltransferase II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-37504453-4	chr19	37504357	37504557	+	952.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	39203.0	NR_131009	78640.0	Mm.234265	NR_131008		1700122C19Rik	-	RIKEN cDNA 1700122C19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72143542-2	chr6	72143442	72143642	+	900.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_001035228, intron 4 of 6)	intron (NM_001035228, intron 4 of 6)	-20345.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-33816903-3	chr17	33816843	33817043	+	927.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357162, intron 2 of 5)	intron (NM_001357162, intron 2 of 5)	6420.0	NM_030697	80880.0	Mm.196330	NM_030697	ENSMUSG00000042099	Kank3	0610013D04Rik|Ankrd47|D17Ertd288e|NG28	KN motif and ankyrin repeat domains 3	protein-coding	3.25107017165486	3.27167192698422	1.96787605087329	2.51734436253059	3.79661911266946	3.40761843849622	4.69548709877346	4.42824754852715	1.95875253278042	0.00112270597137737	0.0212911900599353
Merged-chr3-127323068-3	chr3	127322974	127323174	+	776.194458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001327938, intron 1 of 47)	intron (NM_001327938, intron 1 of 47)	85984.0	NM_001327939	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	3.29951734666254	3.53725600742639	3.25755793550284	2.32135921029107	3.11139009434092	2.67258299282064	3.7827767416233	3.18303313012212	0.125212925801704	0.844930539628946	0.998431161219273
Merged-chr2-167752191-2	chr2	167752091	167752291	+	863.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	61014.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-131166026-4	chr2	131165916	131166116	+	825.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT2B4|LTR|ERVL	-5935.0	NM_026091	67326.0	Mm.27711	NM_026091	ENSMUSG00000027327	1700037H04Rik	-	RIKEN cDNA 1700037H04 gene	protein-coding	1.95439520255792	1.11464480630822	2.12853729057289	2.15221632493883	1.78260702283569	1.56464626668481	1.09851290180674	1.75803593180532	-0.970286872395398	0.39636292000473	0.883276804275027
Merged-chr18-74964770-2	chr18	74964670	74964870	+	756.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3507.0	NM_010720	16891.0	Mm.299647	NM_010720	ENSMUSG00000053846	Lipg	3110013K01Rik|EL|lipase|mEDL	lipase, endothelial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-74476124-4	chr11	74476014	74476214	+	898.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001015046, intron 3 of 24)	intron (NM_001015046, intron 3 of 24)	111443.0	NM_001011851	258153.0	Mm.376124	NM_001011851	ENSMUSG00000058275	Olfr412	MOR127-5P	olfactory receptor 412	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-55567417-4	chr4	55567286	55567486	+	804.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34911.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	3.02243931536889	3.18983684699679	2.85959151843769	3.1827619943143	2.76669010891522	3.49372559113541	3.53524556174325	3.43194093461527	0.451199778720544	0.447246827875754	0.914498173479176
Merged-chr18-38994061-2	chr18	38993961	38994161	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361073, intron 1 of 21)	intron (NM_001361073, intron 1 of 21)	916.0	NM_175164	71302.0	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-60658435-3	chr10	60658367	60658567	+	691.200012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252635, intron 2 of 68)	intron (NM_001252635, intron 2 of 68)	38023.0	NM_001252635	22295.0	Mm.440327	NM_023370	ENSMUSG00000012819	Cdh23	4930542A03Rik|USH1D|ahl|ahl1|bob|bus|mdfw|nmf112|nmf181|nmf252|sals|v	cadherin 23 (otocadherin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134433464-4	chr6	134433380	134433580	+	868.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355686, intron 5 of 5)	intron (NM_001355686, intron 5 of 5)	19052.0	NM_001355686	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	0.315571108550154	0.215258560999823	-0.13592973241206	0.476246153236955	-0.144630942625817	-0.130186831760469	-0.134897040739323	-0.138908794678897	-3.79443962877072	0.0984349987232139	1
Merged-chr11-8566219-2	chr11	8566119	8566319	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 4 of 30)	L1MC5|LINE|L1	98316.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	1.98624035864678	0.976253634589104	2.24666837204956	1.48690298393165	1.65499582970895	0.98045008586665	0.961571112568429	1.74734377268367	-1.16740680466948	0.366879334557914	0.861862339647405
Merged-chr18-46406078-4	chr18	46405969	46406169	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	59747.0	NR_045438	72076.0	Mm.82766	NM_028086		Mospd4	2010013H21Rik	motile sperm domain containing 4	pseudo	4.9986870752872	4.97460181340339	4.82093925378653	5.26047196750672	5.53994450202025	4.65286593353677	5.66332440667271	4.99485289333105	0.299059274510607	0.363306449452982	0.858855050154424
Merged-chr11-69107493-2	chr11	69107393	69107593	+	562.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159367, intron 19 of 22)	intron (NM_001159367, intron 19 of 22)	7341.0	NM_001159367	18626.0	Mm.7373	NM_011065	ENSMUSG00000020893	Per1	Hftm|Per|m-rigui|mPer1	period circadian clock 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-100052375-2	chr15	100052275	100052475	+	628.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159361, intron 1 of 37)	B1_Mur1|SINE|Alu	13711.0	NM_001159361	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127477092-2	chr7	127476992	127477192	+	818.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_145589)	TTS (NM_145589)	5478.0	NM_145589	233895.0	Mm.44183	NM_145589	ENSMUSG00000030822	Prr14	BC006909	proline rich 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-102057226-3	chr5	102057129	102057329	+	895.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 1 of 66)	intron (NM_172882, intron 1 of 66)	12692.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128818443-1	chr2	128818343	128818543	+	1000.0	f0_balb.idr	exon (NM_028248, exon 1 of 19)	exon (NM_028248, exon 1 of 19)	140.0	NM_001355629	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	2.60390204638276	2.63894252639106	2.5512398837373	1.99360817926705	2.16889390172354	2.658178640008	2.3458326720532	1.64131949460831	-0.497203594559029	0.554940765895678	0.959914380895535
Merged-chr15-86201207-4	chr15	86201095	86201295	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13264.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-17363054-2	chr6	17362954	17363154	+	666.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55414.0	NM_001243064	12389.0	Mm.28278	NM_007616	ENSMUSG00000007655	Cav1	Cav|Cav-1	caveolin 1, caveolae protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-60982077-4	chr19	60981946	60982146	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018869, intron 1 of 15)	intron (NM_018869, intron 1 of 15)	92297.0	NM_018869	14773.0	Mm.279400	NM_018869	ENSMUSG00000003228	Grk5	Gprk5	G protein-coupled receptor kinase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-128456604-3	chr8	128456443	128456643	+	940.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358959, intron 6 of 16)	intron (NM_001358959, intron 6 of 16)	97302.0	NR_035436	100316680.0		NR_035436	ENSMUSG00000084523	Mir1903	Mirn1903|mmu-mir-1903	microRNA 1903	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-56031519-2	chr16	56031419	56031619	+	703.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-1802.0	NM_001356450	76302.0	Mm.310642	NM_001024622	ENSMUSG00000071533	Pcnp	1110018D06Rik|AI647035	PEST proteolytic signal containing nuclear protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-89746874-3	chr14	89746765	89746965	+	994.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-149359.0	NR_002862	328451.0	Mm.320571	NR_002862		Gm5088	EG328451|Pabpc4l	poly(A)-binding protein, cytoplasmic pseudogene	pseudo	4.24460602201808	5.0385073132431	4.41540840577821	3.73899218171402	2.5721985342098	1.59900001757335	2.51707882297481	1.45100549881967	-3.63278287840302	1.04922802102986e-07	9.21756731789455e-06
Merged-chr12-116425601-1	chr12	116425501	116425701	+	668.0	f0_balb.idr	intron (NM_133762, intron 11 of 28)	RSINE1|SINE|B4	20199.0	NM_133762	76044.0	Mm.491196	NM_133762	ENSMUSG00000042029	Ncapg2	5830426I05Rik|Luzp5|Mtb|mCAP-G2	non-SMC condensin II complex, subunit G2	protein-coding	1.04970380687207	1.78979005309699	0.898767008890947	1.27144037326741	1.68391063746822	1.67746488190843	2.03387523907794	0.887255829888803	1.12728188228849	0.380884457955465	0.872649550356036
Merged-chr14-9393587-4	chr14	9393500	9393700	+	996.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-490495.0	NR_030680	100042415.0	Mm.235938	NR_030680	ENSMUSG00000089686	Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-35126510-2	chr7	35126410	35126610	+	735.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7217.0	NM_007678	12606.0	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	-1.26331444426203	-1.36355630584805	-1.52272189923659	-1.53053467210616	-1.54245435775007	-1.51114959732935	-1.52056877479163	-1.52913618949789	-1.90260483685633	0.584008459975193	1
Merged-chr10-59879573-4	chr10	59879492	59879692	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019965)	promoter-TSS (NM_019965)	1.0	NM_019965	56709.0	Mm.103610	NM_019965	ENSMUSG00000020109	Dnajb12	Dj10|mDj10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-57537862-3	chr14	57537778	57537978	+	786.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145837, intron 2 of 2)	intron (NM_145837, intron 2 of 2)	13049.0	NM_145837	239114.0	Mm.390726	NM_145837	ENSMUSG00000050222	Il17d	AI462269|IL-17D	interleukin 17D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-128690312-4	chr7	128690196	128690396	+	805.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346517, intron 1 of 5)	intron (NM_001346517, intron 1 of 5)	1426.0	NM_001346517	101490.0	Mm.490344	NM_178641	ENSMUSG00000042105	Inpp5f	5830435P03Rik|AI115354|AW561896|SAC2|cI-27|hSAC2|mKIAA0966	inositol polyphosphate-5-phosphatase F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-6153425-2	chr7	6153325	6153525	+	817.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013012, intron 1 of 2)	intron (NM_001013012, intron 1 of 2)	2546.0	NM_001013012	67109.0	Mm.3254	NM_001013012	ENSMUSG00000046792	Zfp787	2210018M03Rik|Znf787	zinc finger protein 787	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-116484658-2	chr7	116484558	116484758	+	545.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19711.0	NM_001130479	53322.0	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101144480-2	chr7	101144380	101144580	+	701.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_199012, intron 3 of 20)	(T)n|Simple_repeat|Simple_repeat	35705.0	NM_199012	207278.0	Mm.263041	NM_199012	ENSMUSG00000030691	Fchsd2	BC034086|R74866|Sh3md3|mKIAA0769	FCH and double SH3 domains 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-4981501-2	chr12	4981401	4981601	+	766.900024	f1_balb.idr|f1_c57bl6.idr	intron (NM_001362349, intron 17 of 27)	intron (NM_001362349, intron 17 of 27)	64148.0	NM_001362349	320817.0	Mm.210966	NM_001099628	ENSMUSG00000052812	Atad2b	1110014E10Rik|BC032887|C79189|D530031C13Rik	ATPase family, AAA domain containing 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-25481080-4	chr14	25480982	25481182	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	21897.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-116993894-2	chr4	116993742	116993942	+	755.708374	f1_balb.idr|f1_c57bl6.idr	intron (NM_009478, intron 1 of 9)	intron (NM_009478, intron 1 of 9)	571.0	NM_009478	22275.0	Mm.46484	NM_009478	ENSMUSG00000028684	Urod	AI323803|UPD|Uro-d	uroporphyrinogen decarboxylase	protein-coding	1.67693315224795	0.900028627890681	1.11444311654815	2.2606730939796	1.21189376651408	0.904258308282347	1.95951145525945	1.27437615093429	-0.642283822101537	0.618280064238602	0.977784386300714
Merged-chr10-99441210-4	chr10	99441106	99441306	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-167965.0	NR_038019	100504202.0	Mm.403801	NR_038019	ENSMUSG00000111962	Gm20110	-	predicted gene, 20110	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-123545813-1	chr4	123545713	123545913	+	633.5	f0_balb.idr	intron (NM_001199137, intron 2 of 92)	intron (NM_001199137, intron 2 of 92)	-70607.0	NR_105824	102465214.0		NR_105824	ENSMUSG00000099005	Mir6398	Gm27657|mmu-mir-6398	microRNA 6398	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97771611-4	chr11	97771516	97771716	+	853.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_028156, exon 3 of 3)	exon (NM_028156, exon 3 of 3)	4302.0	NM_028156	72215.0	Mm.269049	NM_028156	ENSMUSG00000018543	1700001P01Rik	-	RIKEN cDNA 1700001P01 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-120531919-1	chr6	120531819	120532019	+	573.0	f0_balb.idr	promoter-TSS (NM_144815)	promoter-TSS (NM_144815)	-620.0	NM_144815	214932.0	Mm.255322	NM_144815	ENSMUSG00000058979	Hdhd5	A930002G03Rik|Cecr5	haloacid dehalogenase like hydrolase domain containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-95840800-2	chr11	95840700	95840900	+	583.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163464, intron 1 of 7)	intron (NM_001163464, intron 1 of 7)	-1495.0	NM_023121	14710.0	Mm.46299	NM_023121	ENSMUSG00000038811	Gngt2	AV096488	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-85367104-3	chr10	85367006	85367206	+	737.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1H|LTR|ERVL-MaLR	-19708.0	NM_028709	74007.0	Mm.36544	NM_028709	ENSMUSG00000020042	Btbd11	6330404E16Rik	BTB (POZ) domain containing 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-142508868-4	chr6	142508762	142508962	+	984.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302765)	promoter-TSS (NM_001302765)	-905.0	NM_001316322	16832.0	Mm.9745	NM_008492	ENSMUSG00000030246	Ldhb	AI790582|H-Ldh|LDH-B|LDH-H|Ldh-2|Ldh2	lactate dehydrogenase B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-46955225-4	chr14	46955132	46955332	+	895.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_105813)	promoter-TSS (NR_105813)	-304.0	NR_105813	102465206.0		NR_105813	ENSMUSG00000099036	Mir378c	Gm27930|mmu-mir-378c	microRNA 378c	ncRNA	2.39887230088061	2.45326869267902	2.95145048523939	2.52720537049563	2.7482259228941	2.47123420481686	2.253991330958	1.41985792828038	-0.603063094560169	0.478151586254976	0.928092227925527
Merged-chr17-15825571-1	chr17	15825471	15825671	+	624.0	f0_c57.idr	intron (NM_178615, intron 1 of 2)	CpG	1015.0	NM_178615	68799.0	Mm.293466	NM_178615	ENSMUSG00000048027	Rgmb	1110059F19Rik|DRAGON	repulsive guidance molecule family member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-96982138-2	chr5	96982038	96982238	+	750.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-15551.0	NM_080708	140780.0	Mm.281490	NM_080708	ENSMUSG00000034663	Bmp2k	4933417M22Rik|AA673486|AV128808|BIKE	BMP2 inducible kinase	protein-coding	0.255295001385735	0.350001009743106	0.185017114586466	0.0241535236821394	0.261297818002274	0.356897032736028	0.189303974117823	0.0247283590335579	0.0403157359360957	0.983060913564854	1
Merged-chr10-86883474-4	chr10	86883354	86883554	+	970.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138673, intron 44 of 68)	intron (NM_138673, intron 44 of 68)	104449.0	NM_175331	103466.0	Mm.200446	NM_175331	ENSMUSG00000054027	Nt5dc3	AU040402|AW540062|C630002B14Rik|TU12B1-TY	5'-nucleotidase domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-80042359-4	chr15	80042250	80042450	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27542.0	NM_011057	18591.0	Mm.144089	NM_011057	ENSMUSG00000000489	Pdgfb	PDGF-B|Sis	platelet derived growth factor, B polypeptide	protein-coding	4.75709168633776	4.46750024530201	4.01391972317733	3.75361239304187	4.76078872139603	4.84211104659658	3.53310989135871	4.33703274973038	0.194764876506445	0.665294762008882	0.992380258859526
Merged-chr3-105959308-4	chr3	105959214	105959414	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027432)	promoter-TSS (NM_027432)	-184.0	NM_027432	70465.0	Mm.5110	NM_027432	ENSMUSG00000000561	Wdr77	2610003I18Rik|2610312E17Rik|C79984|p44/MEP50	WD repeat domain 77	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-58762189-2	chr7	58762089	58762289	+	815.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009728, intron 2 of 20)	intron (NM_009728, intron 2 of 20)	103987.0	NM_009728	11982.0	Mm.135129	NM_009728	ENSMUSG00000025324	Atp10a	Atp10c|pfatp	ATPase, class V, type 10A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-87276249-1	chr17	87276149	87276349	+	541.0	f1_balb.idr	intron (NR_015506, intron 4 of 4)	intron (NR_015506, intron 4 of 4)	6565.0	NR_015506	74597.0	Mm.63783	NR_015506	ENSMUSG00000085287	4833418N02Rik	-	RIKEN cDNA 4833418N02 gene	ncRNA	0.0120816621030362	-0.121398743569792	-0.126875068877136	-0.131111673588638	0.616580585008993	0.525541561371313	-0.125665809120451	-0.130370807486766	3.1499991154712	0.171097478844253	1
Merged-chr2-67886728-2	chr2	67886628	67886828	+	684.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	105685.0	NR_105752	102466627.0		NR_105752	ENSMUSG00000098734	Mir6335	Gm27836|mmu-mir-6335	microRNA 6335	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-11746319-3	chr11	11746185	11746385	+	864.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301865, intron 3 of 6)	intron (NM_001301865, intron 3 of 6)	56108.0	NM_001301863	22778.0	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-174327628-7	chr2	174327534	174327734	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310083)	promoter-TSS (NM_001310083)	-134.0	NM_001310083	14683.0	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-121354941-3	chr9	121354847	121355047	+	795.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152160, intron 1 of 17)	intron (NR_152160, intron 1 of 17)	-12011.0	NM_001357973	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-91787078-2	chr9	91786978	91787178	+	654.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3A|LINE|L1	-405858.0	NM_001195693	100504689.0	Mm.464262	NM_001195693	ENSMUSG00000095654	Plscr5	331000	phospholipid scramblase family, member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-23763456-2	chr1	23763356	23763556	+	565.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172124, intron 1 of 3)	intron (NM_172124, intron 1 of 3)	1530.0	NM_172124	280645.0	Mm.471661	NM_172124	ENSMUSG00000026156	B3gat2	GlcAT-S|Glcats	beta-1,3-glucuronyltransferase 2 (glucuronosyltransferase S)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-64702436-2	chr9	64702336	64702536	+	963.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001134399, intron 23 of 24)	intron (NM_001134399, intron 23 of 24)	35320.0	NM_017382	53869.0	Mm.1387	NM_017382	ENSMUSG00000004771	Rab11a	-	RAB11A, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-86739133-4	chr11	86739034	86739234	+	871.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003908, intron 1 of 31)	intron (NM_001003908, intron 1 of 31)	18433.0	NM_001003908	67300.0	Mm.254588	NM_001003908	ENSMUSG00000047126	Cltc	3110065L21Rik|CHC|R74732	clathrin, heavy polypeptide (Hc)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135918988-7	chr4	135918886	135919086	+	999.4127199999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009924, exon 2 of 2)	3' UTR (NM_009924, exon 2 of 2)	-1740.0	NM_024243	71665.0	Mm.439940	NM_024243	ENSMUSG00000028673	Fuca1	0610006A03Rik|9530055J05Rik|Afuc|Fuca	fucosidase, alpha-L- 1, tissue	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-11027678-2	chr18	11027578	11027778	+	952.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-24832.0	NM_010258	14465.0	Mm.329287	NM_010258	ENSMUSG00000005836	Gata6	AA410133|GATA-6	GATA binding protein 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-93305740-1	chr13	93305640	93305840	+	606.0	f1_balb.idr	intron (NM_147176, intron 1 of 9)	intron (NM_147176, intron 1 of 9)	1983.0	NM_011982	26556.0	Mm.37533	NM_011982	ENSMUSG00000007617	Homer1	PSD-Zip45|SYN47|Ves-1|homer-1|vesl-1	homer scaffolding protein 1	protein-coding	-0.000521468705982825	0.213943022850649	0.0112545878393735	0.734634232343061	0.150175719938535	0.0182641303952405	0.599822041228749	0.00760617492025287	-0.426903230495354	0.839344508746856	1
Merged-chr12-70975715-2	chr12	70975615	70975815	+	619.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_011184, intron 1 of 10)	(CA)n|Simple_repeat|Simple_repeat	1092.0	NM_011184	19167.0	Mm.296338	NM_011184	ENSMUSG00000060073	Psma3	Lmpc8	proteasome (prosome, macropain) subunit, alpha type 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-73133654-2	chr11	73133542	73133742	+	633.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361245, intron 24 of 30)	intron (NM_001361245, intron 24 of 30)	4652.0	NM_010353	14841.0	Mm.42045	NM_010353	ENSMUSG00000050107	Haspin	Gsg2	histone H3 associated protein kinase	protein-coding	-0.605159523701947	-0.594116237171468	-0.597738223658067	0.0306133245632224	-0.604471279605959	-0.593299269534912	-0.596939695456833	-0.167618268272535	-0.704591710035489	0.805658358061801	1
Merged-chr1-172316071-2	chr1	172316036	172316236	+	836.799988	f1_balb.idr|f1_c57bl6.idr	intron (NM_080419, intron 1 of 6)	intron (NM_080419, intron 1 of 6)	3769.0	NM_080419	140559.0	Mm.271717	NM_080419	ENSMUSG00000038034	Igsf8	ESTM34|EWI-2|KCT-4|PGRL	immunoglobulin superfamily, member 8	protein-coding	0.330228428075383	-0.00199717889795406	0.522302639431243	-0.00999177189691131	0.235392981668035	0.180990164686493	-0.00552382808922147	0.143758659704035	-0.778908275998195	0.700590475892008	1
Merged-chr10-81192349-2	chr10	81192249	81192449	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001190473, intron 8 of 8)	intron (NM_001190473, intron 8 of 8)	-2342.0	NR_015477	69678.0	Mm.81562	NR_015477		Atcayos	2310050B05Rik	ataxia, cerebellar, Cayman type, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-15990321-4	chr19	15990230	15990430	+	773.158325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045355, intron 2 of 2)	L1M4b|LINE|L1	5255.0	NR_045355	100502653.0	Mm.149980	NR_045355	ENSMUSG00000097557	C130060C02Rik	-	RIKEN cDNA C130060C02 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-126862829-2	chr2	126862729	126862929	+	558.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164325, intron 1 of 38)	intron (NM_001164325, intron 1 of 38)	13432.0	NM_001164325	58800.0	Mm.244705	NM_021450	ENSMUSG00000027365	Trpm7	2310022G15Rik|4833414K03Rik|5033407O22Rik|CHAK|CHAK1|LTrpC-7|Ltpr7|Ltrpc7|TRPPLIK	transient receptor potential cation channel, subfamily M, member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-94286563-2	chr2	94286463	94286663	+	876.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25164.0	NR_030431	735259.0		NR_030431	ENSMUSG00000076335	Mir670	Mirn670|mir-670|mmu-mir-670	microRNA 670	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-135689911-2	chr3	135689811	135690011	+	880.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008689, intron 1 of 24)	intron (NM_008689, intron 1 of 24)	1636.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-101699072-2	chr4	101698972	101699172	+	644.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-18335.0	NM_001122899	16847.0	Mm.259282	NM_010704	ENSMUSG00000057722	Lepr	LEPROT|Leprb|Modb1|OB-RGRP|Obr|db|diabetes|obese-like|obl	leptin receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-102065278-4	chr7	102065204	102065404	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286689)	promoter-TSS (NM_001286689)	-139.0	NM_001360748	75212.0	Mm.101141	NM_029211	ENSMUSG00000070426	Rnf121	4930544L10Rik	ring finger protein 121	protein-coding	1.92753725890597	1.05521718353394	2.00469294197351	1.23864653058264	2.10855682691468	1.0600726396805	2.30230275792198	1.42965106650785	0.563500823813066	0.638382351698075	0.982599433509505
Merged-chr9-55259979-4	chr9	55259877	55260077	+	962.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_032002, intron 3 of 7)	intron (NM_032002, intron 3 of 7)	23648.0	NM_032002	83961.0	Mm.443874	NM_032002	ENSMUSG00000032311	Nrg4	AI552600	neuregulin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-73240315-3	chr6	73240212	73240412	+	914.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	-8193.0	NM_019879	56451.0	Mm.29845	NM_019879	ENSMUSG00000052738	Suclg1	1500000I01Rik|Sucla1	succinate-CoA ligase, GDP-forming, alpha subunit	protein-coding	3.80222236479582	3.57875082411476	4.42994391009776	3.90353317830772	3.12152913066512	1.54249626567095	1.47515028180425	1.7140250327678	-2.92014397945404	0.000112700336473959	0.00336921587295987
Merged-chr6-34227404-2	chr6	34227304	34227504	+	704.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-50350.0	NM_021435	58246.0	Mm.245527	NM_021435	ENSMUSG00000018999	Slc35b4	4930474D06Rik|AB041549|AW494345	solute carrier family 35, member B4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-5038019-2	chr2	5037919	5038119	+	637.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356487, intron 6 of 13)	intron (NM_001356487, intron 6 of 13)	-25228.0	NM_027290	70024.0	Mm.23828	NM_027290	ENSMUSG00000026669	Mcm10	2410041F14Rik|AU018508|C330019M07Rik|C79164	minichromosome maintenance 10 replication initiation factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129624262-1	chr2	129624162	129624362	+	1000.0	f1_c57bl6.idr	intron (NM_001355158, intron 7 of 8)	intron (NM_001355158, intron 7 of 8)	28800.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	-0.590535183227988	-0.927506822323212	-0.936065523452905	-0.937949444978677	-0.686580999095573	-0.925042559271787	-0.935525276798409	-0.781629005664263	0.114635924104852	0.969143117123263	1
Merged-chr15-78332917-2	chr15	78332817	78333017	+	829.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358854, intron 2 of 14)	(TTTTTG)n|Simple_repeat|Simple_repeat	6927.0	NM_007780	12983.0	Mm.235324	NM_007780	ENSMUSG00000071713	Csf2rb	AI848964|AIC2B|Bc|CDw131|Csf2rb1|Csfgmrb|Il3r|Il3rb|Il3rb1|Il5rb	colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-39416918-4	chr18	39416817	39417017	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008173, intron 6 of 7)	intron (NM_008173, intron 6 of 7)	70328.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115282648-4	chr5	115282548	115282748	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026504, intron 1 of 6)	intron (NM_026504, intron 1 of 6)	2946.0	NM_026504	52064.0	Mm.290142	NM_026504	ENSMUSG00000041733	Coq5	1810014G04Rik|D5Ertd33e	coenzyme Q5 methyltransferase	protein-coding	4.47944208882878	5.06533786777718	4.1855805245604	4.66175031587521	5.35603654912342	5.73048951835019	4.52577915392891	5.12733495133593	0.742715028310406	0.0422196458690249	0.29426282771152
Merged-chr10-82900954-1	chr10	82900854	82901054	+	910.0	f1_c57bl6.idr	Intergenic	Intergenic	34328.0	NM_025499	66341.0	Mm.443284	NM_025499	ENSMUSG00000109864	Eid3	1700027M21Rik|NS4EB	EP300 interacting inhibitor of differentiation 3	protein-coding	3.05877959440134	1.48131446626332	1.14919347939716	2.83044283454744	2.10583518989873	1.49272116319424	1.15748634068071	2.84581814219974	-0.650553163065537	0.559520563263263	0.960321604678676
Merged-chr7-117470648-4	chr7	117470553	117470753	+	987.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175645, intron 1 of 11)	intron (NM_175645, intron 1 of 11)	89674.0	NM_175645	233781.0	Mm.461427	NM_175645	ENSMUSG00000030657	Xylt1	8030490L12	xylosyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-54528578-2	chr8	54528478	54528678	+	574.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029701, intron 1 of 4)	intron (NM_029701, intron 1 of 4)	1420.0	NM_029701	76687.0	Mm.86437	NM_029701	ENSMUSG00000054408	Spcs3	1810011E08Rik|SPC22/23	signal peptidase complex subunit 3 homolog (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-118290735-1	chr4	118290635	118290835	+	683.0	f1_balb.idr	intron (NM_011213, intron 1 of 32)	CpG	662.0	NM_011213	19268.0	Mm.29855	NM_011213	ENSMUSG00000033295	Ptprf	AA591035|LAR|LARS|RPTP-LAR	protein tyrosine phosphatase, receptor type, F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28215683-2	chr7	28215582	28215782	+	724.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13B1|LTR|ERVK	35366.0	NM_001271370	13549.0	Mm.57249	NM_010092	ENSMUSG00000002409	Dyrk1b	Mirk	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35867710-4	chr17	35867618	35867818	+	809.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175242, exon 1 of 3)	exon (NM_175242, exon 1 of 3)	1103.0	NM_175242	76448.0	Mm.359982	NM_175242	ENSMUSG00000034595	Ppp1r18	2310014H01Rik|AA407849|AI450394	protein phosphatase 1, regulatory subunit 18	protein-coding	0.700172776932474	1.72751687713682	2.21551604348851	0.728739263183629	0.704521847655912	1.86579627827172	1.53924218899805	0.731658205791423	-0.602790981218464	0.687332342493612	0.996533206832645
Merged-chr5-136169639-2	chr5	136169539	136169739	+	648.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178751, intron 1 of 2)	PB1D10|SINE|Alu	1017.0	NM_178751	269717.0	Mm.308396	NM_178751	ENSMUSG00000039747	Orai2	A730041O15Rik|Tmem142b	ORAI calcium release-activated calcium modulator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171815958-4	chr1	171815851	171816051	+	919.383301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER20|DNA|hAT-Charlie	-23746.0	NM_001252472	12523.0	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	4.07170427366347	5.24618229454502	3.66659022847297	3.44798211933791	5.208709787548	5.65024100271514	5.94449256007811	5.32490805415251	1.51420113063145	0.000237097418071146	0.00616624600148326
Merged-chr11-51604803-2	chr11	51604703	51604903	+	729.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_010448, exon 4 of 7)	exon (NM_010448, exon 4 of 7)	2078.0	NM_001048061	15384.0	Mm.256875	NM_010448	ENSMUSG00000020358	Hnrnpab	3010025C11Rik|CBF-A|Cgbfa|Hnrpab	heterogeneous nuclear ribonucleoprotein A/B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-123027909-4	chr8	123027805	123028005	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 1 of 12)	intron (NM_001081379, intron 1 of 12)	14379.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	4.17369092511956	3.38006404799396	4.67256668830033	3.80369703072959	4.29477845679745	4.40709978686179	4.0160972341601	4.69276313993647	0.366881894049615	0.41298100097867	0.894933061362207
Merged-chr8-35683721-3	chr8	35683626	35683826	+	979.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-94706.0	NR_040376	100504714.0	Mm.381744	NR_040376	ENSMUSG00000097357	Gm16793	-	predicted gene, 16793	ncRNA	1.05601162755743	1.13465325609882	2.2070633550886	1.66831975552931	2.5372430119219	2.08023380897249	1.731102400258	1.81726653746906	1.29195334366766	0.249423509560434	0.747698903845194
Merged-chr11-50232883-1	chr11	50232783	50232983	+	551.0	f1_c57bl6.idr	TTS (NR_105884)	TTS (NR_105884)	638.0	NR_105884	102466765.0		NR_105884	ENSMUSG00000098474	Mir6919	Gm27889|mmu-mir-6919	microRNA 6919	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-33918533-2	chr2	33918433	33918633	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-30587.0	NM_175184	72543.0	Mm.254914	NM_175184	ENSMUSG00000038740	Mvb12b	2610200O14Rik|2610528K11Rik|AI414895|Fam125b	multivesicular body subunit 12B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-114512208-2	chr10	114512108	114512308	+	653.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146241, intron 7 of 18)	intron (NM_146241, intron 7 of 18)	289162.0	NM_146241	237553.0	Mm.445550	NM_146241	ENSMUSG00000050663	Trhde	9330155P21Rik	TRH-degrading enzyme	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-88475258-1	chr4	88475158	88475358	+	545.0	f0_balb.idr	Intergenic	L1MA4|LINE|L1	-36332.0	NM_025760	66775.0	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-92934538-5	chr1	92934486	92934686	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_015525, exon 2 of 2)	non-coding (NR_015525, exon 2 of 2)	178.0	NM_011796	23830.0	Mm.294315	NM_011796	ENSMUSG00000026270	Capn10	AW049679|Capn8|mKIAA1845	calpain 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-70657262-4	chr9	70657191	70657391	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172772)	promoter-TSS (NM_172772)	-117.0	NM_172772	235461.0	Mm.170855	NM_172772	ENSMUSG00000042444	Mindy2	AI465301|B230380D07Rik|Fam63b|mKIAA1164	MINDY lysine 48 deubiquitinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-9074584-4	chr4	9074471	9074671	+	980.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-194722.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-88691597-3	chr8	88691497	88691697	+	606.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5431.0	NM_001128170	74256.0	Mm.490395	NM_173369	ENSMUSG00000036712	Cyld	2010013M14Rik|2900009M21Rik|C130039D01Rik|CDMT|CYLD1|EAC|mKIAA0849	CYLD lysine 63 deubiquitinase	protein-coding	0.366527840463181	0.0384229972454707	0.19499437058718	0.30756477941859	0.548033961082866	0.219324667834187	0.0348862962297971	0.0310153484093537	-0.00337754951153025	0.998653477421754	1
Merged-chr6-17667864-2	chr6	17667764	17667964	+	625.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_007604)	TTS (NM_007604)	-26130.0	NM_001289626	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-102878635-2	chr2	102878535	102878735	+	797.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039150, intron 1 of 13)	intron (NM_001039150, intron 1 of 13)	23030.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-114128267-4	chr5	114128154	114128354	+	983.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359940)	promoter-TSS (NM_001359940)	-36.0	NM_001359941	231642.0	Mm.332593	NM_175016	ENSMUSG00000044339	Alkbh2	9530023G02|AU016977|Abh2|mABH2	alkB homolog 2, alpha-ketoglutarate-dependent dioxygenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-18595037-4	chr8	18594938	18595138	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173189)	promoter-TSS (NM_173189)	-93.0	NM_173189	244329.0	Mm.235296	NM_173189	ENSMUSG00000039842	Mcph1	5430437K10Rik|BRIT1|D030046N04Rik|MCT|Tg(HLA-A2.1)1Enge	microcephaly, primary autosomal recessive 1	protein-coding	2.24259321451002	1.28475322858635	1.73182975023214	2.55937282147494	2.04554445460682	1.29239506979237	3.0339966361969	2.734730485216	0.861078967823677	0.398315152316525	0.884476083278755
Merged-chr8-79150073-2	chr8	79149973	79150173	+	800.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001294279, intron 8 of 14)	intron (NM_001294279, intron 8 of 14)	98510.0	NM_026315	67687.0	Mm.178707	NM_026315	ENSMUSG00000031682	1700011L22Rik	-	RIKEN cDNA 1700011L22 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-74588214-4	chr1	74588103	74588303	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310668)	promoter-TSS (NM_001310668)	-86.0	NM_001305652	66821.0	Mm.358700	NM_025784	ENSMUSG00000026172	Bcs1l	9130022O19Rik	BCS1-like (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-121451887-4	chr5	121451804	121452004	+	850.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029912)	promoter-TSS (NM_029912)	570.0	NM_026129	67397.0	Mm.154570	NM_026129	ENSMUSG00000029616	Erp29	1200015M03Rik|2810446M09Rik|AW209030|Erp28|Erp31|PDI-Db	endoplasmic reticulum protein 29	protein-coding	1.542771093552	2.19543703018711	3.22195913840849	3.0578909781664	2.92225960489621	1.75997127870905	1.93423238485341	3.65317236493346	0.248716806881303	0.779438021671001	0.998431161219273
Merged-chr5-135794724-3	chr5	135794673	135794873	+	815.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16124.0	NM_008617	17448.0	Mm.297096	NM_008617	ENSMUSG00000019179	Mdh2	MDH|Mdh-2|Mor-1|Mor1	malate dehydrogenase 2, NAD (mitochondrial)	protein-coding	0.146052208013578	0.254722988881755	-0.127572329820398	-0.132024118474509	-0.138343585290525	-0.120534298705277	-0.126302665597136	0.796247393305439	0.98215417701132	0.667605019066599	1
Merged-chr2-173217709-2	chr2	173217609	173217809	+	772.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001139519, intron 1 of 3)	PB1D7|SINE|Alu	1213.0	NM_021394	58203.0	Mm.116687	NM_021394	ENSMUSG00000027514	Zbp1	2010010H03Rik|Dai|Dlm1|mZaDLM	Z-DNA binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-58393042-4	chr1	58392951	58393151	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025824)	promoter-TSS (NM_025824)	-85.0	NM_025824	66882.0	Mm.21848	NM_025824	ENSMUSG00000051223	Bzw1	1200015E15Rik|mKIAA0005	basic leucine zipper and W2 domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-88278990-4	chr7	88278880	88279080	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009982, intron 1 of 6)	intron (NM_009982, intron 1 of 6)	895.0	NM_001311790	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-75981095-2	chr2	75980991	75981191	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_030188, exon 1 of 1)	exon (NM_030188, exon 1 of 1)	876.0	NM_030188	78802.0	Mm.282339	NM_030188	ENSMUSG00000075271	Ttc30a1	4930506L13Rik	tetratricopeptide repeat domain 30A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-51736561-4	chr13	51736504	51736704	+	916.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001281880, intron 2 of 16)	intron (NM_001281880, intron 2 of 16)	57143.0	NM_001281880	20354.0	Mm.33903	NM_013660	ENSMUSG00000021451	Sema4d	CD100|Semacl2|Semaj|Semcl2|coll-4	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-90930351-3	chr8	90930251	90930451	+	636.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177224, intron 2 of 39)	intron (NM_177224, intron 2 of 39)	-1898.0	NM_001310530	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	-1.84456824087626	-1.81369603968745	-1.82303204814395	-1.83070092346192	-1.84240106943552	-1.51787681909439	-1.82091858046888	-1.82932819844659	1.64481029852639	0.639921510788462	1
Merged-chr8-126812855-2	chr8	126812755	126812955	+	649.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19A|LTR|ERVK	-36165.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-65643501-2	chr17	65643401	65643601	+	689.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1297.0	NM_001146002	213272.0	Mm.255732	NM_153519	ENSMUSG00000050612	Txndc2	AU021712|Sptrx-1|Sptrx1|Trx4	thioredoxin domain containing 2 (spermatozoa)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64317424-4	chr5	64317342	64317542	+	925.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 13 of 18)	intron (NM_001289514, intron 13 of 18)	87085.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	1.99131833757818	2.2213622911817	1.73433967790183	2.29170199615026	2.00669859229836	1.79645129526919	2.16550911553285	2.1019996678304	-0.144308083807528	0.873474273093337	0.998431161219273
Merged-chr12-31954425-4	chr12	31954333	31954533	+	951.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4188.0	NM_001361928	73389.0	Mm.390461	NM_153198	ENSMUSG00000002996	Hbp1	1700058O05Rik|BE629963|C330012F01Rik|C86454	high mobility group box transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-45620028-4	chr17	45619928	45620128	+	820.18335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17926.0	NM_001177469	653016.0	Mm.45676	NM_001177468	ENSMUSG00000079471	Mymx	EG653016|Esgp|Gm7325|minion|myomerger	myomixer, myoblast fusion factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105855485-2	chr8	105855385	105855585	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_021513, exon 1 of 1)	exon (NM_021513, exon 1 of 1)	382.0	NM_021513	59016.0	Mm.286598	NM_021513	ENSMUSG00000036442	Thap11	2810036E22Rik|AB041579|CTG-B43a|CTG-B45d|Ronin	THAP domain containing 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-34145971-4	chr8	34145966	34146166	+	636.375	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026609, intron 1 of 3)	intron (NM_026609, intron 1 of 3)	673.0	NM_026609	68192.0	Mm.34212	NM_026609	ENSMUSG00000031513	Leprotl1	1110067H13Rik|1520402O14Rik|AI854296	leptin receptor overlapping transcript-like 1	protein-coding	-0.177733621508433	-0.805752184127899	-0.808838537208662	-0.811215655782965	-0.543043920694761	-0.803068160812789	-0.808158328395888	-0.810800640862464	-1.36685470224649	0.652602213394196	1
Merged-chr1-134244381-3	chr1	134244297	134244497	+	702.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8940.0	NM_001008533	11539.0	Mm.298908	NM_009629	ENSMUSG00000042429	Adora1	A1-AR|A1AR|A1R|AA1R|AI848715|BB176431|Ri	adenosine A1 receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97397922-3	chr6	97397795	97397995	+	625.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 5 of 23)	URR1A|DNA|hAT-Charlie	61391.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-73718909-1	chr12	73718809	73719009	+	545.0	f1_c57bl6.idr	intron (NM_008856, intron 9 of 13)	ORR1B1|LTR|ERVL-MaLR	134113.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-3715455-4	chr7	3715361	3715561	+	878.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357394, intron 9 of 14)	intron (NM_001357394, intron 9 of 14)	4921.0	NM_001357394	18733.0	Mm.326531	NM_011095	ENSMUSG00000058818	Pirb	Gp91|LIR-3|Lilrb3|PIR-B	paired Ig-like receptor B	protein-coding	3.37066873530953	3.38950590522705	1.44389734063343	3.31725631985671	2.53138932855244	2.0552117307255	1.7443301206207	3.26895360871537	-0.95885978754476	0.265607786926341	0.768264760738244
Merged-chr2-84523284-1	chr2	84523184	84523384	+	857.0	f0_balb.idr	Intergenic	Intergenic	-16411.0	NR_046046	672763.0	Mm.491046	NR_046046	ENSMUSG00000087362	Gm13710	-	predicted gene 13710	ncRNA	0.45523809295445	1.28859033029158	0.990319133088182	0.468697028745191	0.457255702769167	1.18387940323504	1.12800295528508	0.47009951828968	0.0208491808229343	0.990522146820848	0.998431161219273
Merged-chr15-86215631-3	chr15	86215510	86215710	+	976.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145476, intron 1 of 12)	intron (NM_145476, intron 1 of 12)	1151.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-23156489-4	chr2	23156368	23156568	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025979)	promoter-TSS (NM_025979)	-37.0	NM_013771	27377.0	Mm.23335	NM_013771	ENSMUSG00000026775	Yme1l1	FtsH1|Ftsh	YME1-like 1 (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-83823962-4	chr3	83823862	83824062	+	884.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1VL4|LINE|L1	17646.0	NM_011905	24088.0	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81432361-3	chr10	81432267	81432467	+	863.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5194.0	NM_026756	18029.0	Mm.426936	NM_008688	ENSMUSG00000055053	Nfic	1110019L22Rik|1500041O16Rik|AA589446|AI746521|NF1-C	nuclear factor I/C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85727120-2	chr12	85727020	85727220	+	548.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19419.0	NM_145447	217721.0	Mm.301076	NM_145447	ENSMUSG00000034258	Flvcr2	CCT|Mfsd7c	feline leukemia virus subgroup C cellular receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-90016850-3	chr3	90016743	90016943	+	791.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001165987, intron 17 of 24)	intron (NM_001165987, intron 17 of 24)	-5633.0	NR_106129	102465771.0		NR_106129	ENSMUSG00000098397	Mir7669	Gm27996|mmu-mir-7669	microRNA 7669	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141950167-2	chr7	141950067	141950267	+	803.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001276763, exon 1 of 20)	exon (NM_001276763, exon 1 of 20)	416.0	NM_001009929	75770.0	Mm.274868	NM_029426	ENSMUSG00000053046	Brsk2	4833424K13Rik|SAD-A|SADA	BR serine/threonine kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-51985765-3	chr14	51985652	51985852	+	734.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_045728)	TTS (NR_045728)	919.0	NM_198249	268739.0	Mm.9239	NM_198249	ENSMUSG00000004562	Arhgef40	E130112L23Rik|Gm669|Solo	Rho guanine nucleotide exchange factor (GEF) 40	protein-coding	-0.752703249331578	-1.19327662759868	-1.20367200772054	-1.21221108246634	-1.07350664517746	-1.1910239053609	-1.2013187215212	-1.21068259216948	-1.39419391438984	0.678133685438574	1
Merged-chr18-61466180-3	chr18	61466077	61466277	+	765.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18430.0	NR_045419	442846.0	Mm.417648	NR_045419		A530050N04Rik	-	RIKEN cDNA A530050N04 gene	ncRNA	-1.50561175621786	-1.47331375025452	-1.02203377115094	-1.49110398925286	-1.50334449591826	-1.47119716082604	-1.48086985756939	-1.48966786617048	-2.07776723614574	0.550394407909386	1
Merged-chr13-41263798-4	chr13	41263710	41263910	+	975.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001135577, intron 1 of 1)	intron (NM_001135577, intron 1 of 1)	13966.0	NM_001135577	108934.0	Mm.38578	NM_001135577	ENSMUSG00000091264	Smim13	2900036K02Rik	small integral membrane protein 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-10712030-1	chr18	10711930	10712130	+	576.0	f1_c57bl6.idr	TTS (NR_045379)	TTS (NR_045379)	5170.0	NR_045379	75370.0	Mm.159511	NR_045379	ENSMUSG00000097387	4930563E18Rik	-	RIKEN cDNA 4930563E18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-54991257-2	chr11	54991157	54991357	+	834.333313	f1_balb.idr|f1_c57bl6.idr	intron (NR_138556, intron 19 of 24)	intron (NR_138556, intron 19 of 24)	-28317.0	NM_001271455	57783.0	Mm.259671	NM_021327	ENSMUSG00000020400	Tnip1	ABIN|ABIN-1|ABIN1|AU018810|Naf1|Nef|VAN	TNFAIP3 interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117675809-3	chr10	117675708	117675908	+	856.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027468, intron 6 of 8)	intron (NM_027468, intron 6 of 8)	34950.0	NM_010786	17246.0	Mm.22670	NM_010786	ENSMUSG00000020184	Mdm2	1700007J15Rik|AA415488|Mdm-2	transformed mouse 3T3 cell double minute 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-127163017-4	chr6	127162910	127163110	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040275, intron 1 of 1)	intron (NR_040275, intron 1 of 1)	-11962.0	NM_009829	12444.0	Mm.333406	NM_009829	ENSMUSG00000000184	Ccnd2	2600016F06Rik|AI256817|BF642806|C86853|Vin-1|Vin1|cD2	cyclin D2	protein-coding	4.77510576815194	4.67658090893276	4.13018148223262	4.2008240399093	4.77819372465721	4.70798993489221	4.46157505295704	4.48276514659518	0.173595839195131	0.643772575875476	0.983220888090013
Merged-chr4-138178110-1	chr4	138178010	138178210	+	681.0	f0_balb.idr	intron (NM_001355699, intron 22 of 32)	intron (NM_001355699, intron 22 of 32)	14901.0	NR_105825	102466907.0		NR_105825	ENSMUSG00000098513	Mir6399	Gm27667|mir-6399|mmu-mir-6399	microRNA 6399	ncRNA	-1.84371485578039	-1.81332821174849	-1.82251738371298	-1.83006564316449	-1.84158176955426	-1.81133687985023	-1.5312619047181	-1.82871450833159	1.60090129203521	0.64914985597185	1
Merged-chr7-98155746-2	chr7	98155646	98155846	+	670.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_007602, intron 2 of 12)	intron (NM_007602, intron 2 of 12)	6596.0	NM_001301250	12337.0	Mm.326847	NM_007602	ENSMUSG00000035547	Capn5	nCL-3	calpain 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-9710254-2	chr3	9710154	9710354	+	868.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_053182, intron 2 of 7)	Lx5c|LINE|L1	-100169.0	NM_133218	170753.0	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-83622005-4	chr2	83621868	83622068	+	738.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	T-rich|Low_complexity|Low_complexity	-22610.0	NM_026934	69082.0	Mm.27804	NM_026934	ENSMUSG00000027091	Zc3h15	1700006A17Rik|1810012H02Rik|2610312B22Rik|FM22|Ierepo4	zinc finger CCCH-type containing 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-89454079-1	chr1	89453979	89454179	+	630.0	f0_balb.idr	promoter-TSS (NM_178119)	promoter-TSS (NM_178119)	-732.0	NM_178119	347722.0	Mm.291135	NM_178119	ENSMUSG00000055013	Agap1	Centg2|Ggap1|R75364|mKIAA1099	ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-76196504-8	chr12	76196352	76196552	+	923.775024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19193.0	NR_104386	13983.0	Mm.2561	NM_010157	ENSMUSG00000021055	Esr2	ER[b]|ERbeta|Estrb	estrogen receptor 2 (beta)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85510680-3	chr12	85510577	85510777	+	849.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16A2|LTR|ERVL	36787.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126497176-2	chr8	126497076	126497276	+	863.1666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22111.0	NM_001159907	212728.0	Mm.482479	NM_001159907	ENSMUSG00000090290	Tarbp1	Gm17296|Gm179	TAR RNA binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-97858087-4	chr13	97857989	97858189	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	106977.0	NR_152263	111365222.0	Mm.440079	NR_152263		Eyelinc18	-	uncharacterized EyeLinc18	ncRNA	4.38618805238842	4.63464085832516	4.26361457337086	4.64666798805629	4.02629459709696	4.37422542582369	4.75885684698028	5.43277662107004	0.329704474894077	0.421213822633354	0.900322118218157
Merged-chr7-110005567-2	chr7	110005467	110005667	+	988.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_037959, intron 1 of 2)	intron (NR_037959, intron 1 of 2)	1079.0	NR_037959	69781.0	Mm.440728	NR_037959	ENSMUSG00000101585	1600010M07Rik	-	RIKEN cDNA 1600010M07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-72261246-4	chr8	72261141	72261341	+	859.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21223.0	NM_007456	11767.0	Mm.290086	NM_007456	ENSMUSG00000003033	Ap1m1	AA408894|AP47|Adtm1A|Cltnm|mu1A	adaptor-related protein complex AP-1, mu subunit 1	protein-coding	3.93871169870917	3.7107787669811	4.29561170163503	4.13574879824947	3.48730112253717	3.19582684705537	4.05129394726643	3.87128312360799	-0.489182069677681	0.306658120928886	0.807214597390253
Merged-chr8-25534473-1	chr8	25534373	25534573	+	542.0	f1_c57bl6.idr	intron (NM_001079909, intron 2 of 16)	intron (NM_001079909, intron 2 of 16)	15714.0	NM_001079908	14182.0	Mm.265716	NM_010206	ENSMUSG00000031565	Fgfr1	AW208770|Eask|FGFR-I|FLG|Fgfr-1|Flt-2|Hspy|MFR|bFGF-R-1|c-fgr	fibroblast growth factor receptor 1	protein-coding	0.556183852976783	0.66985273729513	0.284007487213012	1.27343674196936	0.563506431828357	0.293568467075644	0.479922711520722	0.279006636852948	-2.15624685566333	0.231933544412571	1
Merged-chr4-59200978-1	chr4	59200878	59201078	+	541.0	f1_c57bl6.idr	intron (NM_011673, intron 1 of 8)	intron (NM_011673, intron 1 of 8)	11428.0	NM_011673	22234.0	Mm.198803	NM_011673	ENSMUSG00000028381	Ugcg	AU043821|C80537|Epcs21|GlcT-1|Ugcgl	UDP-glucose ceramide glucosyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126928866-4	chr7	126928754	126928954	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172747)	promoter-TSS (NM_172747)	-25.0	NM_172747	233877.0	Mm.245897	NM_172747	ENSMUSG00000030685	Kctd13	1500003N18Rik|AV259508|PDIP1alpha|Pdip1|Poldip1	potassium channel tetramerisation domain containing 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-42146828-2	chr19	42146728	42146928	+	689.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183195)	promoter-TSS (NM_183195)	-561.0	NM_183195	277010.0	Mm.206250	NM_183195	ENSMUSG00000044345	Marveld1	AI504298|Mrvldc1	MARVEL (membrane-associating) domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-75833928-3	chr10	75833772	75833972	+	855.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010361, intron 1 of 4)	intron (NM_010361, intron 1 of 4)	1009.0	NM_010361	14872.0	Mm.24118	NM_010361	ENSMUSG00000033318	Gstt2	AI266894|Yrs|mGSTT2	glutathione S-transferase, theta 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-80884786-4	chr13	80884707	80884907	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042591, intron 1 of 7)	intron (NM_001042591, intron 1 of 7)	-1288.0	NR_153411	105171.0	Mm.423137	NM_001042591	ENSMUSG00000074794	Arrdc3	AI450344|mKIAA1376	arrestin domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115511699-1	chr5	115511599	115511799	+	624.0	f1_balb.idr	intron (NM_011223, intron 1 of 10)	B1F|SINE|Alu	5023.0	NM_133915	19303.0	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	0.51293411253216	0.543342303890736	1.03275042446367	0.525798739748338	1.1448144837497	0.545554964279158	1.37493011311969	1.22391558318038	2.32714650642984	0.176914285118529	0.646570188136342
Merged-chr18-61944792-2	chr18	61944666	61944866	+	818.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8309.0	NM_172628	225608.0	Mm.262320	NM_172628	ENSMUSG00000045629	Sh3tc2	D430044G18Rik	SH3 domain and tetratricopeptide repeats 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-113619197-2	chr13	113619097	113619297	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_130796)	promoter-TSS (NM_130796)	-633.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-81213226-4	chr7	81213112	81213312	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008803)	promoter-TSS (NM_008803)	-592.0	NM_008803	18584.0	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-35256344-4	chr2	35256257	35256457	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001206367)	promoter-TSS (NM_001206367)	-2.0	NM_001206367	227753.0	Mm.443	NM_146120	ENSMUSG00000026879	Gsn	ADF	gelsolin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-130750704-4	chr2	130750604	130750804	+	952.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029432, intron 20 of 36)	RMER10A|LTR|ERVL	-53185.0	NM_001081162	269356.0	Mm.441391	NM_001081162	ENSMUSG00000074796	Slc4a11	AI503023|BTR1|NaBC1	solute carrier family 4, sodium bicarbonate transporter-like, member 11	protein-coding	0.854863632213154	0.0996359686323159	0.0940064469355172	0.508986849725526	0.22775274845638	0.294953620970052	0.0952479461590627	0.254628863724186	-1.63698146787304	0.40468135894879	1
Merged-chr12-102707652-2	chr12	102707552	102707752	+	742.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-2783.0	NM_172584	217837.0	Mm.482192	NM_172584	ENSMUSG00000057963	Itpk1	BC031182	inositol 1,3,4-triphosphate 5/6 kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180922535-4	chr1	180922428	180922628	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12494.0	NM_010094	13590.0	Mm.378911	NM_010094	ENSMUSG00000038793	Lefty1	AI450052|Ebaf|Leftb|Stra3|Tgfb4|lefty|lefty-1	left right determination factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-104522268-3	chr14	104522164	104522364	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026047, intron 1 of 5)	CpG	402.0	NM_026047	72486.0	Mm.291811	NM_026047	ENSMUSG00000022120	Rnf219	2610206B13Rik|2810449K13Rik|AI451544	ring finger protein 219	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-45099234-4	chr2	45099163	45099363	+	834.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149354, intron 2 of 2)	intron (NR_149354, intron 2 of 2)	11014.0	NM_001289521	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-18625690-3	chr3	18625585	18625785	+	952.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-145208.0	NR_040544	73959.0	Mm.60616	NR_040544	ENSMUSG00000102699	4930433B08Rik	-	RIKEN cDNA 4930433B08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-61072910-2	chr18	61072810	61073010	+	710.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008809, intron 12 of 22)	intron (NM_008809, intron 12 of 22)	27760.0	NM_008809	18596.0	Mm.4146	NM_008809	ENSMUSG00000024620	Pdgfrb	AI528809|CD140b|PDGFR-1|Pdgfr	platelet derived growth factor receptor, beta polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-110705969-4	chr12	110705868	110706068	+	968.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14|LTR|ERV1	-9573.0	NM_010480	15519.0	Mm.1843	NM_010480	ENSMUSG00000021270	Hsp90aa1	86kDa|89kDa|AL024080|AL024147|Hsp86-1|Hsp89|Hsp90|Hspca|hsp4	heat shock protein 90, alpha (cytosolic), class A member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5085611-1	chr19	5085511	5085711	+	599.0	f0_balb.idr	promoter-TSS (NM_001001885)	promoter-TSS (NM_001001885)	-134.0	NM_001001885	381199.0	Mm.329663	NM_001001885	ENSMUSG00000061451	Tmem151a	AW125688|Gm961|Tmem151	transmembrane protein 151A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166786053-2	chr2	166785953	166786153	+	797.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7714.0	NM_023815	76367.0	Mm.330796	NM_023815	ENSMUSG00000042854	Trp53rkb	2810408M09Rik|4933401B08Rik|5630401H01Rik|Nori-2|PRPK|Tp53rk|Trp53rk|Trp53tk|mNori-2p	transformation related protein 53 regulating kinase B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-14103316-4	chr10	14103192	14103392	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010437, intron 2 of 8)	intron (NM_010437, intron 2 of 8)	136913.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91132267-4	chr2	91132164	91132364	+	977.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008653, intron 22 of 31)	intron (NM_008653, intron 22 of 31)	14120.0	NM_008653	17868.0	Mm.10728	NM_008653	ENSMUSG00000002100	Mybpc3	-	myosin binding protein C, cardiac	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-154594084-4	chr2	154593989	154594189	+	844.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021534, intron 2 of 3)	intron (NM_021534, intron 2 of 3)	9584.0	NM_021534	59038.0	Mm.24673	NM_021534	ENSMUSG00000000876	Pxmp4	3010018P03Rik|Pmp24	peroxisomal membrane protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4294579-4	chr19	4294485	4294685	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290818, intron 2 of 20)	intron (NM_001290818, intron 2 of 20)	-11448.0	NM_026720	68423.0	Mm.23642	NM_026720	ENSMUSG00000005986	Ankrd13d	0710001P18Rik|AI430801	ankyrin repeat domain 13 family, member D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55147018-4	chr14	55146899	55147099	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30064.0	NM_177049	319984.0	Mm.19047	NM_177049	ENSMUSG00000022208	Jph4	9330157P13Rik|JP-4|JPHL1	junctophilin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-41896588-4	chr10	41896487	41896687	+	895.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013370, intron 4 of 9)	L1MC2|LINE|L1	9148.0	NM_001013370	140742.0	Mm.139418	NM_001013370	ENSMUSG00000038332	Sesn1	1110002G11Rik|AU044290|Pa26|Sest1	sestrin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-130726893-2	chr7	130726793	130726993	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021314, intron 2 of 17)	intron (NM_021314, intron 2 of 17)	34337.0	NM_021314	57752.0	Mm.86322	NM_021314	ENSMUSG00000030852	Tacc2	mKIAA4180	transforming, acidic coiled-coil containing protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-105260464-3	chr4	105260361	105260561	+	642.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	103114.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	0.914644612432572	1.21885350283371	0.758488788159579	1.73497985804277	0.921522026798311	0.778612410565113	2.0656258323885	1.42806861980498	0.656186735885648	0.634120263952668	0.982417279970648
Merged-chr11-49237808-4	chr11	49237710	49237910	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-6381.0	NM_010794	17308.0	Mm.196933	NM_010794	ENSMUSG00000020346	Mgat1	Mgat-1	mannoside acetylglucosaminyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-11028001-2	chr16	11027901	11028101	+	622.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19103.0	NR_040518	100043147.0	Mm.489001	NR_040518	ENSMUSG00000097056	Gm4262	-	predicted gene 4262	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-98832834-2	chr15	98832734	98832934	+	991.375	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001033276, exon 55 of 55)	3' UTR (NM_001033276, exon 55 of 55)	-1326.0	NM_016781	19082.0	Mm.6670	NM_016781	ENSMUSG00000067713	Prkag1	AA571379|BB036179|Prkaac	protein kinase, AMP-activated, gamma 1 non-catalytic subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-97502828-2	chr14	97502728	97502928	+	546.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR73|LTR|ERV1	666937.0	NM_001038610	13134.0	Mm.320593	NM_007826	ENSMUSG00000055639	Dach1	Dac|Dach	dachshund family transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-34662428-4	chr14	34662342	34662542	+	872.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8868.0	NR_029647	723831.0		NR_029647	ENSMUSG00000094316	Mir297-1	Mir297a-1|Mirn297-1	microRNA 297-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-88106887-2	chr6	88106787	88106987	+	567.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2629.0	NR_105795	102465196.0		NR_105795	ENSMUSG00000099095	Mir6376	Gm27778|mmu-mir-6376	microRNA 6376	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-17749590-3	chr17	17749494	17749694	+	651.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45653.0	NM_001104539	626942.0	Mm.404019	NM_001104539	ENSMUSG00000092120	Vmn2r90	EG626942	vomeronasal 2, receptor 90	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-77795413-2	chr17	77795313	77795513	+	963.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20B4_MM|LTR|ERVK	-404835.0	NM_015800	50766.0	Mm.311912	NM_015800	ENSMUSG00000024074	Crim1	AU015004	cysteine rich transmembrane BMP regulator 1 (chordin like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-17645876-4	chr17	17645774	17645974	+	866.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21385.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	-1.69986312423686	-1.81314243252593	-1.82225744210362	-1.82974478236248	-1.84116796638235	-1.66774645889968	-1.82019400373055	-1.82840455203593	0.0376840119903864	0.991491645451152	1
Merged-chr5-74974343-2	chr5	74974243	74974443	+	639.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25149.0	NR_045866	619945.0	Mm.359372	NM_001037908	ENSMUSG00000072874	Gm6116	EG619945	predicted gene 6116	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-31002180-2	chr17	31002080	31002280	+	628.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177465, intron 19 of 21)	intron (NM_177465, intron 19 of 21)	47497.0	NM_177465	52020.0	Mm.25923	NM_177465	ENSMUSG00000054134	Umodl1	D17Ertd488e	uromodulin-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-4857698-4	chr1	4857602	4857802	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011541)	promoter-TSS (NM_011541)	8.0	NM_011541	21399.0	Mm.207263	NM_011541	ENSMUSG00000033813	Tcea1	S-II	transcription elongation factor A (SII) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-121059757-3	chr7	121059680	121059880	+	930.1333619999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021554, intron 4 of 4)	intron (NM_021554, intron 4 of 4)	14750.0	NM_030691	80719.0	Mm.160384	NM_030691	ENSMUSG00000035004	Igsf6	-	immunoglobulin superfamily, member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-13605818-2	chr6	13605718	13605918	+	575.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028990, intron 1 of 4)	L2|LINE|L2	2280.0	NR_155435	101118.0	Mm.254845	NM_028990	ENSMUSG00000029569	Tmem168	5730526F17Rik|8430437G11Rik|AI462344|AI504145	transmembrane protein 168	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78933800-1	chr15	78933700	78933900	+	736.0	f1_c57bl6.idr	Intergenic	MER5A|DNA|hAT-Charlie	-1133.0	NM_133800	97961.0	Mm.157216	NM_133800	ENSMUSG00000033099	Nol12	C78541|Nop25	nucleolar protein 12	protein-coding	1.04305829859714	0.164010690183054	0.156857891998031	0.721032402998758	0.143412652618672	0.165616789272891	0.653244583110849	0.15227893999	-1.78701942868751	0.396964641101639	1
Merged-chr13-37600979-1	chr13	37600879	37601079	+	565.5	f0_balb.idr	Intergenic	Intergenic	-225059.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-73340994-3	chr12	73340871	73341071	+	646.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037717, intron 8 of 15)	intron (NM_001037717, intron 8 of 15)	54123.0	NM_001037717	625098.0	Mm.32075	NM_001037717	ENSMUSG00000044712	Slc38a6	AW322671|EG625098	solute carrier family 38, member 6	protein-coding	-1.33529739681439	-1.30591854857254	-1.3158428643115	-1.1678401991129	-0.950618823128122	-1.30376790795164	-1.31359621676301	-1.3225357656552	1.06732360251078	0.756380064897408	1
Merged-chr10-12015458-1	chr10	12015358	12015558	+	717.0	f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	406234.0	NM_013898	30058.0	Mm.214504	NM_013898	ENSMUSG00000048007	Timm8a1	DXHXS1274E|Ddp1|Fci-12|Tim8a|Timm8a	translocase of inner mitochondrial membrane 8A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-102469950-2	chr11	102469842	102470042	+	904.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010575)	promoter-TSS (NM_010575)	-59.0	NM_010575	16399.0	Mm.26646	NM_010575	ENSMUSG00000034664	Itga2b	AI172977|CD41|CD41B|GpIIb|alphaIIb	integrin alpha 2b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-21635796-2	chr16	21635696	21635896	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081366, intron 45 of 46)	Lx2|LINE|L1	58869.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-108690890-2	chr9	108690790	108690990	+	739.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1253.0	NM_008924	19087.0	Mm.253102	NM_008924	ENSMUSG00000032601	Prkar2a	1110061A24Rik|AI317181|AI836829|RII(alpha)	protein kinase, cAMP dependent regulatory, type II alpha	protein-coding	0.561571668429657	1.20459753043608	1.6084863533403	0.580087086893972	0.564364113650923	1.21627328905129	1.6253598255642	0.582001708222329	0.040488581107574	0.98038007611541	0.998431161219273
Merged-chr12-40220507-4	chr12	40220448	40220648	+	856.966675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013562, intron 1 of 11)	intron (NM_013562, intron 1 of 11)	2263.0	NR_035459	100316693.0		NR_035459	ENSMUSG00000089371	Mir1938	mir-1938|mmu-mir-1938	microRNA 1938	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111677556-2	chr12	111677456	111677656	+	917.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001099792)	promoter-TSS (NM_001099792)	-549.0	NM_001099792	328162.0	Mm.425747	NM_177374	ENSMUSG00000060950	Trmt61a	6720458F09Rik|AI606093|Gcd14|Trm61	tRNA methyltransferase 61A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-58761552-4	chr1	58761446	58761646	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30994.0	NM_001293805	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-25486374-2	chr14	25486274	25486474	+	729.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	27189.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-115334681-3	chr6	115334580	115334780	+	965.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA7|LINE|L1	-26271.0	NM_001127330	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-77582636-2	chr10	77582536	77582736	+	612.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145925, intron 1 of 5)	intron (NM_145925, intron 1 of 5)	981.0	NM_145925	108705.0	Mm.28853	NM_145925	ENSMUSG00000009291	Pttg1ip	1810010L20Rik|AI314311|AU018448|C79540|PBF	pituitary tumor-transforming 1 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-48342121-2	chr17	48342021	48342221	+	580.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC5|LINE|L1	-4280.0	NM_031254	83433.0	Mm.261623	NM_031254	ENSMUSG00000023992	Trem2	TREM-2|Trem2a|Trem2b|Trem2c	triggering receptor expressed on myeloid cells 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-29273790-2	chr6	29273690	29273890	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023516, intron 1 of 1)	B1_Mus1|SINE|Alu	1164.0	NM_023516	69573.0	Mm.45161	NM_023516	ENSMUSG00000043421	Hilpda	2310016C08Rik|AW049004|Hig2	hypoxia inducible lipid droplet associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111712180-2	chr12	111712080	111712280	+	631.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_027404, intron 1 of 1)	PB1D10|SINE|Alu	773.0	NM_001324481	70369.0	Mm.44239	NM_027404	ENSMUSG00000049792	Bag5	1600025G07Rik|4930405J06Rik|Bag-5	BCL2-associated athanogene 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-104069796-3	chr12	104069702	104069902	+	613.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8157.0	NR_002861	321018.0	Mm.297023	NR_002861		Serpina4-ps1	KALps|Klst	serine (or cysteine) peptidase inhibitor, clade A, member 4, pseudogene 1	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-71441820-2	chr6	71441720	71441920	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1183.0	NM_024288	68477.0	Mm.28474	NM_024288	ENSMUSG00000002222	Rmnd5a	1110007A06Rik|AJ237586|AW125795|Gid2|MTA.D02.090	required for meiotic nuclear division 5 homolog A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126594014-4	chr8	126593903	126594103	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164598)	promoter-TSS (NM_001164598)	-567.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-5255229-3	chr16	5255139	5255339	+	703.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027446, intron 1 of 7)	intron (NM_027446, intron 1 of 7)	717.0	NM_027446	70511.0	Mm.45780	NM_027446	ENSMUSG00000022544	Eef2kmt	5730409G15Rik|Fam86|Fam86a|eEF2-KMT	eukaryotic elongation factor 2 lysine methyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27005838-4	chr17	27005738	27005938	+	974.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12197.0	NM_001251881	70772.0	Mm.440437	NM_027544	ENSMUSG00000048731	Ggnbp1	0610031G08Rik|mdf	gametogenetin binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-50381768-3	chr3	50381656	50381856	+	768.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011990, intron 8 of 11)	intron (NM_011990, intron 8 of 11)	61857.0	NM_011990	26570.0	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	0.766426761659914	0.874414927966344	0.519012866613596	1.03850067303803	0.77333984934307	0.882195371237398	0.520676252599195	1.04555738646014	0.0348221386679208	0.982228586595845	1
Merged-chr15-43382618-4	chr15	43382518	43382718	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	94418.0	NR_046064	100038728.0	Mm.244168	NR_046064	ENSMUSG00000072592	Gm10373	-	predicted gene 10373	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-75036040-2	chr8	75035940	75036140	+	891.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001136259, intron 1 of 15)	RMER5|LTR|ERV1	2354.0	NM_011622	21968.0	Mm.1967	NM_011622	ENSMUSG00000042870	Tom1	-	target of myb1 trafficking protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-138909604-4	chr7	138909498	138909698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009760)	promoter-TSS (NM_009760)	-92.0	NM_009760	12176.0	Mm.378890	NM_009760	ENSMUSG00000078566	Bnip3	Nip3	BCL2/adenovirus E1B interacting protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21132200-2	chr9	21132100	21132300	+	753.299988	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018793)	promoter-TSS (NM_018793)	-925.0	NM_001205312	54721.0	Mm.20249	NM_018793	ENSMUSG00000032175	Tyk2	JTK1	tyrosine kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-94600047-2	chr16	94599947	94600147	+	858.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113389, intron 1 of 11)	intron (NM_001113389, intron 1 of 11)	-11372.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-13270034-2	chr12	13269933	13270133	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027706, intron 1 of 51)	intron (NM_027706, intron 1 of 51)	906.0	NM_027706	71169.0	Mm.177520	NM_027706	ENSMUSG00000020576	Nbas	4933425L03Rik|Nag	neuroblastoma amplified sequence	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-54919366-4	chr15	54919267	54919467	+	995.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285994, intron 2 of 25)	intron (NM_001285994, intron 2 of 25)	779.0	NM_015744	18606.0	Mm.250256	NM_015744	ENSMUSG00000022425	Enpp2	ATX|E-NPP 2|Npps2|PD-Ialpha|Pdnp2|lysoPLD	ectonucleotide pyrophosphatase/phosphodiesterase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-4792742-3	chr4	4792649	4792849	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177730, exon 1 of 5)	exon (NM_177730, exon 1 of 5)	557.0	NM_177730	242291.0	Mm.218889	NM_177730	ENSMUSG00000066324	Impad1	1110001C20Rik|AA408880|AI451589|AL022796|B230207P20|Jaws|gPAPP	inositol monophosphatase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26517062-2	chr17	26516962	26517162	+	701.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8590.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	0.189513146755039	0.222164902843711	0.211690939286099	0.731742310721872	0.191613271283341	1.4939750800758	0.214018792652375	0.867920520623324	2.35519712861493	0.231380435291643	1
Merged-chr11-101978796-2	chr11	101978696	101978896	+	553.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028207, intron 2 of 2)	intron (NM_028207, intron 2 of 2)	5995.0	NM_028207	72349.0	Mm.196295	NM_028207	ENSMUSG00000003518	Dusp3	2210015O03Rik|5031436O03Rik|T-DSP11|VHR	dual specificity phosphatase 3 (vaccinia virus phosphatase VH1-related)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-60263449-2	chr10	60263349	60263549	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14179.0	NM_001146123	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-84426640-4	chr2	84426452	84426652	+	957.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1286.0	NM_018782	54598.0	Mm.75467	NM_018782	ENSMUSG00000059588	Calcrl	AV071593|CRLR	calcitonin receptor-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5769843-2	chr19	5769743	5769943	+	694.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_155264, intron 3 of 15)	intron (NR_155264, intron 3 of 15)	1576.0	NM_023912	78891.0	Mm.276063	NM_023912	ENSMUSG00000024941	Scyl1	2810011O19Rik|C85140|Ntkl|mdf|mfd|p105	SCY1-like 1 (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-47184874-2	chr19	47184774	47184974	+	929.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021360, intron 1 of 5)	L1MB5|LINE|L1	6054.0	NM_021360	18011.0	Mm.313651	NM_021360	ENSMUSG00000006435	Neurl1a	2410129E16Rik|AI450910|AI481072|Neu1|Neur1|Neurl|Neurl1|Nlz|Rnf67	neuralized E3 ubiquitin protein ligase 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-78162867-2	chr11	78162767	78162967	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009423, intron 1 of 6)	intron (NM_009423, intron 1 of 6)	2683.0	NM_009423	22032.0	Mm.390418	NM_009423	ENSMUSG00000017386	Traf4	A530032M13Rik|CART1|msp2	TNF receptor associated factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-8711020-2	chr19	8710920	8711120	+	714.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161413, intron 4 of 9)	intron (NM_001161413, intron 4 of 9)	2877.0	NM_008577	17254.0	Mm.4114	NM_008577	ENSMUSG00000010095	Slc3a2	4F2|4F2HC|AI314110|Cd98|Ly-10|Ly-m10|Ly10|Mdu1|Mgp-2hc|NACAE	solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16615339-4	chr7	16615228	16615428	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172739)	promoter-TSS (NM_172739)	-335.0	NM_172739	232906.0	Mm.28646	NM_172739	ENSMUSG00000058230	Arhgap35	6430596G11Rik|AI841135|Grlf1|mKIAA1722|p190A|p190RhoGAP	Rho GTPase activating protein 35	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-110330615-3	chr5	110330455	110330655	+	798.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011132, intron 41 of 48)	intron (NM_011132, intron 41 of 48)	12480.0	NM_153400	231602.0	Mm.55948	NM_153400	ENSMUSG00000029503	P2rx2	P2X2a|P2x2	purinergic receptor P2X, ligand-gated ion channel, 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-117845161-3	chr12	117845082	117845282	+	745.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146040, intron 1 of 9)	ID_B1|SINE|B4	1321.0	NM_146040	217946.0	Mm.281149	NM_146040	ENSMUSG00000021175	Cdca7l	BC006933|JPO2	cell division cycle associated 7 like	protein-coding	-0.178228728984106	-0.183481298391244	-0.49221027765316	-0.494279378202688	-0.497170227165522	-0.319007704877372	-0.336824660449241	-0.493919308218167	-1.12764427789345	0.653200903270005	1
Merged-chr8-104345213-2	chr8	104345113	104345313	+	770.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_024217, intron 3 of 4)	intron (NM_024217, intron 3 of 4)	4619.0	NM_024217	68119.0	Mm.390108	NM_024217	ENSMUSG00000031875	Cmtm3	9430096L06Rik|AI413895|BNAS2|Cklfsf3	CKLF-like MARVEL transmembrane domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-47077449-1	chr14	47077349	47077549	+	723.0	f1_c57bl6.idr	intron (NM_001037221, intron 7 of 12)	intron (NM_001037221, intron 7 of 12)	8472.0	NM_001310544	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	0.279907903376448	0.304735267065533	1.19927532640477	0.750782498177952	0.578961419270448	0.843527022381982	0.298454165188129	0.29150048408352	-0.963294572821458	0.607264506980447	1
Merged-chr10-77926310-2	chr10	77926210	77926410	+	886.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_138301, intron 21 of 33)	B3A|SINE|B2	-23774.0	NM_145152	237387.0	Mm.133301	NM_145152	ENSMUSG00000051652	Lrrc3	1300011L04Rik|C21orf102	leucine rich repeat containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-118933983-1	chr2	118933883	118934083	+	676.0	f1_balb.idr	Intergenic	Intergenic	7486.0	NM_028117	72136.0	Mm.486238	NM_028117	ENSMUSG00000074916	Chst14	2600016L03Rik|D4ST-1|D4st1	carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 14	protein-coding	0.672665943129493	-0.206133852176114	-0.211585788964535	-0.215809149841912	0.385335079247801	-0.204908257831483	-0.210381210849647	-0.215070244540909	-0.787392709509075	0.754602388917587	1
Merged-chr16-17650208-2	chr16	17650108	17650308	+	895.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_033609)	TTS (NM_033609)	3738.0	NM_001166164	72315.0	Mm.297777	NM_001166164	ENSMUSG00000041617	Ccdc74a	2310015A05Rik	coiled-coil domain containing 74A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-31066590-2	chr6	31066490	31066690	+	960.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger1|DNA|TcMar-Tigger	-3497.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-128461819-4	chr7	128461716	128461916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009383)	promoter-TSS (NM_009383)	-143.0	NM_001347640	21843.0	Mm.242072	NM_009383	ENSMUSG00000030846	Tial1	5330433G13Rik|AL033329|TIAR|mTIAR	Tia1 cytotoxic granule-associated RNA binding protein-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-44119273-2	chr16	44119173	44119373	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007508, intron 1 of 14)	intron (NM_007508, intron 1 of 14)	19986.0	NM_001358203	11964.0	Mm.217787	NM_007508	ENSMUSG00000052459	Atp6v1a	AI647066|Atp6a1|Atp6a2|Atp6v1a1|VA68|VPP2	ATPase, H+ transporting, lysosomal V1 subunit A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-9023366-4	chr19	9023260	9023460	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039959, intron 4 of 5)	intron (NM_001039959, intron 4 of 5)	34076.0	NM_001286518	66395.0	Mm.203866	NM_009643	ENSMUSG00000069833	Ahnak	DY6	AHNAK nucleoprotein (desmoyokin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-85339926-1	chr1	85339826	85340026	+	981.0	f1_balb.idr	Intergenic	L1Md_A|LINE|L1	-69360.0	NM_001037909	620078.0	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik	RIKEN cDNA C130026I21 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-57543558-3	chr16	57543416	57543616	+	676.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 4 of 4)	intron (NM_001040397, intron 4 of 4)	-5726.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-144294463-3	chr2	144294351	144294551	+	922.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	23547.0	NM_001355688	74528.0	Mm.386817	NM_028984	ENSMUSG00000027424	Mgme1	8430406I07Rik|AI426476	mitochondrial genome maintenance exonuclease 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-73512209-4	chr2	73512086	73512286	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	17301.0	NM_153138	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-118485089-4	chr7	118484939	118485139	+	935.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001033380)	TTS (NM_001033380)	6936.0	NM_001033380	319622.0	Mm.323386	NM_001033380	ENSMUSG00000095115	Itpripl2	C130081G24|E030018N11Rik	inositol 1,4,5-triphosphate receptor interacting protein-like 2	protein-coding	-0.529347688190991	-0.517797244226478	-0.521585767557906	-0.524505820932158	-0.0476293948531882	-0.516942677780784	-0.520750543743181	0.112264129568491	3.49098637851608	0.201083668611258	1
Merged-chr13-54621748-4	chr13	54621668	54621868	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178397)	promoter-TSS (NM_178397)	-16.0	NM_178397	76577.0	Mm.194459	NM_178397	ENSMUSG00000025873	Faf2	2210404D11Rik|AI462440|Ubxd8|mKIAA0887	Fas associated factor family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-66838509-3	chr1	66838360	66838560	+	702.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007381, intron 8 of 10)	intron (NM_007381, intron 8 of 10)	-20865.0	NM_001122738	68691.0	Mm.240912	NM_177645	ENSMUSG00000026004	Kansl1l	1110028C15Rik|1190030G24|AI427598|C430010P07Rik|mKIAA4189	KAT8 regulatory NSL complex subunit 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45103168-3	chr7	45102905	45103105	+	817.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010189, exon 2 of 7)	exon (NM_010189, exon 2 of 7)	817.0	NM_001357117	14132.0	Mm.3303	NM_010189	ENSMUSG00000003420	Fcgrt	FcRn	Fc receptor, IgG, alpha chain transporter	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-17550867-4	chr10	17550768	17550968	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-172360.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71628443-4	chr8	71628343	71628543	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001029873, exon 42 of 42)	3' UTR (NM_001029873, exon 42 of 42)	2663.0	NR_106035	102466799.0		NR_106035	ENSMUSG00000098976	Mir6769b	Gm27546|mmu-mir-6769b	microRNA 6769b	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21027905-2	chr9	21027805	21028005	+	817.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_010493, exon 7 of 7)	exon (NM_010493, exon 7 of 7)	-1468.0	NM_023892	78369.0	Mm.30220	NM_023892	ENSMUSG00000001014	Icam4	1810015M19Rik|Cd242|ICAM-4	intercellular adhesion molecule 4, Landsteiner-Wiener blood group	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-7170800-2	chr17	7170700	7170900	+	677.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_011299, intron 1 of 20)	intron (NM_011299, intron 1 of 20)	685.0	NM_011299	20112.0	Mm.268383	NM_011299	ENSMUSG00000023809	Rps6ka2	90kDa|D17Wsu134e|Rps6ka-rs1|Rsk3|p90rsk|pp90rsk	ribosomal protein S6 kinase, polypeptide 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46791350-3	chr8	46791239	46791439	+	650.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152560, intron 1 of 7)	intron (NR_152560, intron 1 of 7)	51594.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-52302793-2	chr1	52302693	52302893	+	760.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	-69561.0	NM_001113383	14660.0	Mm.398608	NM_001081081	ENSMUSG00000026103	Gls	6330442B14|AI314027|B230365M23Rik	glutaminase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-40018372-1	chr4	40018272	40018472	+	797.0	f0_balb.idr	Intergenic	Intergenic	-124893.0	NM_007386	11428.0	Mm.331547	NM_007386	ENSMUSG00000028405	Aco1	Aco-1|Irebp|Irp1	aconitase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70199288-2	chr14	70199188	70199388	+	606.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001271408, exon 5 of 21)	exon (NM_001271408, exon 5 of 21)	5335.0	NM_001271408	20410.0	Mm.5068	NM_011366	ENSMUSG00000022091	Sorbs3	SCAM-1|SH3P3|Sh3d4|vinexin-g	sorbin and SH3 domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-154551025-2	chr2	154550925	154551125	+	638.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001171640)	promoter-TSS (NM_001171640)	-751.0	NM_001171640	70362.0	Mm.479620	NM_001171640	ENSMUSG00000078129	Actl10	1700007I08Rik	actin-like 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-81595106-4	chr12	81595008	81595208	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347386)	promoter-TSS (NM_001347386)	-100.0	NM_001347384	69792.0	Mm.279993	NM_027213	ENSMUSG00000002679	Med6	1500012F11Rik|AU019660|AV213303	mediator complex subunit 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27693309-3	chr2	27693201	27693401	+	900.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011305, intron 1 of 9)	intron (NM_011305, intron 1 of 9)	-15991.0	NM_001290481	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167388584-4	chr2	167388497	167388697	+	911.0166630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33113.0	NM_148929	77031.0	Mm.278924	NM_148929	ENSMUSG00000039463	Slc9a8	1200006P13Rik|6430709P13Rik|AI182282|NHE-8|NHE8	solute carrier family 9 (sodium/hydrogen exchanger), member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-145835572-3	chr6	145835460	145835660	+	931.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27177.0	NM_027760	71323.0	Mm.158669	NM_027760	ENSMUSG00000030259	Rassf8	5133400D11Rik|AA815821|AW123240|Hoj1|mHoj-1	Ras association (RalGDS/AF-6) domain family (N-terminal) member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-114400596-4	chr6	114400485	114400685	+	844.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001317126, intron 1 of 1)	intron (NM_001317126, intron 1 of 1)	2499.0	NM_001317126	15465.0	Mm.333327	NM_008285	ENSMUSG00000053004	Hrh1	Bphs|H1R|HH1R|Hir	histamine receptor H1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-121597530-4	chr5	121597435	121597635	+	933.7958369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_178799)	TTS (NM_178799)	-3711.0	NM_001308450	11669.0	Mm.284446	NM_009656	ENSMUSG00000029455	Aldh2	AHD-M1|ALDH-E2|ALDHI|Ahd-5|Ahd5	aldehyde dehydrogenase 2, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-170853775-4	chr1	170853678	170853878	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081304, intron 2 of 15)	intron (NM_001081304, intron 2 of 15)	13993.0	NM_001081304	226641.0	Mm.377046	NM_001081304	ENSMUSG00000026663	Atf6	9130025P16Rik|9630036G24|AA789574|Atf6alpha|ESTM49	activating transcription factor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-133020624-4	chr2	133020517	133020717	+	936.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74581.0	NM_198029	241639.0	Mm.209784	NM_198029	ENSMUSG00000027356	Fermt1	5830467P10Rik|Kindlin-1	fermitin family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-16589787-4	chr12	16589695	16589895	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172950)	promoter-TSS (NM_172950)	-25.0	NM_172950	14245.0	Mm.153625	NM_015763	ENSMUSG00000020593	Lpin1	Lipin1|fld	lipin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107692309-2	chr9	107692209	107692409	+	832.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011349, intron 4 of 17)	intron (NM_011349, intron 4 of 17)	-12717.0	NM_008140	14685.0	Mm.284853	NM_008140	ENSMUSG00000034837	Gnat1	Gnat-1|Ird1|Ird2|Tralpha|irdc|irdr|transducin	guanine nucleotide binding protein, alpha transducing 1	protein-coding	0.767502982404318	0.354134922052058	0.163701232165149	0.159438989076244	0.153426808960401	0.358901181569097	0.483189571122581	0.572859948171074	0.0468068210285846	0.980535431644554	1
Merged-chr4-102760228-4	chr4	102760133	102760333	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285852)	promoter-TSS (NM_001285852)	98.0	NM_001285859	73094.0	Mm.54201	NM_144906	ENSMUSG00000028524	Sgip1	3110007P09Rik|SGIP1alpha|gag	SH3-domain GRB2-like (endophilin) interacting protein 1	protein-coding	1.55011713666731	0.832406017064102	1.48484894051263	1.82115730003937	1.25266618082343	1.55756404736903	0.821036565893003	0.80832670137167	-1.20684960079548	0.390165884507249	0.879265642809537
Merged-chr8-104631419-4	chr8	104631269	104631469	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019662)	promoter-TSS (NM_019662)	-48.0	NM_019662	56437.0	Mm.29467	NM_019662	ENSMUSG00000031880	Rrad	REM3|Rad	Ras-related associated with diabetes	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-136726876-4	chr1	136726776	136726976	+	936.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30665.0	NR_037986	100503474.0	Mm.428276	NR_037986		Platr22	Gm16880	pluripotency associated transcript 22	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55491010-3	chr14	55490910	55491110	+	809.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024645)	promoter-TSS (NM_001024645)	-60.0	NM_001024645	268747.0	Mm.151577	NM_001024645	ENSMUSG00000022211	Carmil3	Lrrc16b|mFLJ00240	capping protein regulator and myosin 1 linker 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-45155865-4	chr14	45155765	45155965	+	842.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310534, intron 14 of 20)	MT2A|LTR|ERVL	63560.0	NM_172597	70561.0	Mm.28129	NM_172597	ENSMUSG00000021830	Txndc16	5730420B22Rik|C77647	thioredoxin domain containing 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91279005-3	chr2	91278866	91279066	+	847.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175123, intron 8 of 8)	intron (NM_175123, intron 8 of 8)	13851.0	NM_023854	77038.0	Mm.43636	NM_023854	ENSMUSG00000027255	Arfgap2	2310032E02Rik|Zfp289	ADP-ribosylation factor GTPase activating protein 2	protein-coding	-0.599121846505938	-0.537294091961326	-0.73741937078926	-0.739999259971133	-0.743641887685694	-0.101682152731206	-0.736681536072552	-0.739548687440444	1.32880271144425	0.629958487042345	1
Merged-chr5-5551279-2	chr5	5551179	5551379	+	750.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153116, intron 4 of 9)	L1_Rod|LINE|L1	8262.0	NM_153116	207704.0	Mm.323984	NM_153116	ENSMUSG00000040464	Gtpbp10	4930545J22Rik|BC034507	GTP-binding protein 10 (putative)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-20656083-4	chr11	20655982	20656182	+	949.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24105.0	NM_001038625	58172.0	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118457752-3	chr11	118457705	118457905	+	852.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-2810.0	NR_045902	100126224.0	Mm.441989	NR_045902	ENSMUSG00000086514	Gm11747	-	predicted gene 11747	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96559605-4	chr3	96559487	96559687	+	996.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001009935, intron 4 of 7)	intron (NM_001009935, intron 4 of 7)	1630.0	NM_001009935	56338.0	Mm.410189	NM_023719	ENSMUSG00000038393	Txnip	1200008J08Rik|AA682105|Hyplip1|THIF|Tbp-2|VDUP1	thioredoxin interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-35126571-2	chr9	35126471	35126671	+	705.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027030, intron 4 of 5)	intron (NM_027030, intron 4 of 5)	-9707.0	NM_009178	20443.0	Mm.275973	NM_009178	ENSMUSG00000032038	St3gal4	SIAT4-C|ST3Gal IV|ST3GalIV|Siat4c	ST3 beta-galactoside alpha-2,3-sialyltransferase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69048338-2	chr11	69048238	69048438	+	855.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_011496, exon 4 of 8)	exon (NM_011496, exon 4 of 8)	2701.0	NM_011496	20877.0	Mm.3488	NM_011496	ENSMUSG00000020897	Aurkb	AIM-1|AIRK2|AL022959|Aik2|Aim1|Ark2|AurB|IPL1|STK-1|Stk12|Stk5	aurora kinase B	protein-coding	-1.50682290038489	-1.31787766594575	-1.48393289872978	-1.33595151133619	-1.50451949613502	-1.31572733451463	-1.48168657417364	-1.49062483785939	-0.740464490307937	0.815857097700362	1
Merged-chr6-13672899-4	chr6	13672817	13673017	+	879.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175312, intron 1 of 4)	B2_Mm2|SINE|B2	5049.0	NM_175312	101148.0	Mm.354863	NM_175312	ENSMUSG00000042742	Bmt2	AI666701|B630005N14Rik	base methyltransferase of 25S rRNA 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81177180-4	chr10	81177086	81177286	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007907, intron 1 of 13)	intron (NM_007907, intron 1 of 13)	555.0	NM_007907	13629.0	Mm.2903	NM_007907	ENSMUSG00000034994	Eef2	Ef-2	eukaryotic translation elongation factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99701183-2	chr15	99701083	99701283	+	626.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001289791)	TTS (NM_001289791)	-1104.0	NM_031842	83797.0	Mm.273756	NM_031842	ENSMUSG00000023018	Smarcd1	AA407987|Baf60a|D15Kz1	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-115909256-3	chr6	115909160	115909360	+	754.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167763, intron 17 of 28)	intron (NM_001167763, intron 17 of 28)	-22667.0	NM_145383	212541.0	Mm.2965	NM_145383	ENSMUSG00000030324	Rho	Noerg1|Opn2|Ops|RP4	rhodopsin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30195103-4	chr7	30194968	30195168	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009795)	promoter-TSS (NM_009795)	85.0	NM_009795	12336.0	Mm.439782	NM_009795	ENSMUSG00000001794	Capns1	Capa-4|Capa4|Capn4|Cdps|Css1|D7Ertd146e	calpain, small subunit 1	protein-coding	6.66532434325651	6.79827483062616	7.27353527570261	6.70271936704683	7.02254241617607	7.12559249993995	6.24430932553875	7.23319738544655	0.0808274815157761	0.716437269736822	0.998431161219273
Merged-chr2-128445608-4	chr2	128445530	128445730	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16279.0	NR_028590	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	2.55401046938379	2.51957593521128	2.66533256137423	2.36987666010118	1.84663889682447	2.39691251228913	2.96143621607736	2.87318900121124	0.13850563199626	0.858891736126555	0.998431161219273
Merged-chr10-13104005-4	chr10	13103906	13104106	+	931.025024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009538, intron 1 of 5)	intron (NM_009538, intron 1 of 5)	13161.0	NR_131912	338438.0		NR_131912		Hymai	-	hydatidiform mole associated and imprinted transcript	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-77823034-3	chr14	77822936	77823136	+	954.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24068.0	NM_001033440	380920.0	Mm.297771	NM_001033440	ENSMUSG00000075512	Gm1587	-	predicted gene 1587	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43536696-2	chr4	43536596	43536796	+	906.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_011602, intron 43 of 56)	intron (NM_011602, intron 43 of 56)	-13142.0	NM_001277875	22004.0	Mm.646	NM_009416	ENSMUSG00000028464	Tpm2	Tpm-2|Trop-2	tropomyosin 2, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-84524897-2	chr2	84524797	84524997	+	581.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1H2|LTR|ERVL-MaLR	-18024.0	NR_046046	672763.0	Mm.491046	NR_046046	ENSMUSG00000087362	Gm13710	-	predicted gene 13710	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-95256344-4	chr10	95256262	95256462	+	713.049988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001330138, intron 2 of 2)	intron (NM_001330138, intron 2 of 2)	67347.0	NM_001330138	12905.0	Mm.473739	NM_009950	ENSMUSG00000045867	Cradd	RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117526343-4	chr8	117526250	117526450	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172285, intron 2 of 32)	intron (NM_172285, intron 2 of 32)	28075.0	NM_172285	234779.0	Mm.192699	NM_172285	ENSMUSG00000034330	Plcg2	PLC-gamma-2|PLCgamma2|Plcg-2	phospholipase C, gamma 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-25397149-3	chr14	25397056	25397256	+	765.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62029.0	NM_001310666	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-148536360-3	chr5	148536256	148536456	+	767.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359199, intron 3 of 6)	intron (NM_001359199, intron 3 of 6)	15317.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-114661222-4	chr5	114661108	114661308	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB7|LINE|L1	-2787.0	NM_022017	63873.0	Mm.266450	NM_022017	ENSMUSG00000014158	Trpv4	0610033B08Rik|OTRPC4|Trp12|VR-OAC|VRL-2|VROAC	transient receptor potential cation channel, subfamily V, member 4	protein-coding	6.1608191412766	5.63102481897481	6.1113964887706	6.16901924936428	5.4928187139217	5.6667612428293	6.68130610540912	6.40760331708904	0.119242272833293	0.67393809615504	0.99440487726309
Merged-chr11-95426685-3	chr11	95426585	95426785	+	710.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359107, intron 1 of 9)	B4A|SINE|B4	12602.0	NM_001359107	20747.0	Mm.285454	NM_025287	ENSMUSG00000057522	Spop	AI315626|Pcif1|TEF2	speckle-type POZ protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-146584221-4	chr3	146584183	146584383	+	939.238098	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019957, intron 6 of 6)	intron (NM_019957, intron 6 of 6)	-12866.0	NM_009474	22262.0	Mm.10865	NM_009474	ENSMUSG00000028186	Uox	AI663847	urate oxidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84203631-4	chr8	84203549	84203749	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4869.0	NR_029740	387216.0		NR_029740	ENSMUSG00000065611	Mir23a	Mirn23a|mir-23a|mmu-mir-23a	microRNA 23a	ncRNA	0.18939299175999	0.256012129223401	2.04607397723087	0.218697560140821	0.1938914456728	0.260525715855228	2.06898515487868	0.221660155951083	0.0414146789845748	0.989902750848204	0.998431161219273
Merged-chr13-49682082-4	chr13	49681961	49682161	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172015)	promoter-TSS (NM_172015)	-69.0	NM_172015	105148.0	Mm.21118	NM_172015	ENSMUSG00000037851	Iars	2510016L12Rik|AI327140|AU044614|E430001P04Rik|ILRS	isoleucine-tRNA synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100169265-1	chr11	100169165	100169365	+	635.0	f0_balb.idr	Intergenic	Intergenic	-23339.0	NM_008471	16669.0	Mm.439699	NM_008471	ENSMUSG00000020911	Krt19	AI663979|CK-19|EndoC|K19|Krt-1.19|Krt1-19	keratin 19	protein-coding	1.00512043086239	0.618521643850327	0.804519951953915	1.55106057804983	0.752951887369274	1.01573959139679	0.61029626112759	1.29993361601655	-0.461539125048238	0.758795651103726	0.998431161219273
Merged-chr10-94966927-4	chr10	94966822	94967022	+	881.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22344.0	NM_018797	54712.0	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-30982796-2	chr6	30982696	30982896	+	908.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23806.0	NM_001135093	619665.0	Mm.204671	NM_001135093	ENSMUSG00000073209	Klf14	5330411L03Rik|AL022736|BTEB5	Kruppel-like factor 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-88697515-1	chr1	88697415	88697615	+	565.0	f0_balb.idr	TTS (NM_177305)	TTS (NM_177305)	4676.0	NM_177305	320982.0	Mm.27968	NM_177305	ENSMUSG00000049866	Arl4c	A630084M22Rik|Arl7|LAK	ADP-ribosylation factor-like 4C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-121813724-2	chr5	121813624	121813824	+	914.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359153, intron 23 of 23)	intron (NM_001359153, intron 23 of 23)	5549.0	NR_105998	102465624.0		NR_105998	ENSMUSG00000099063	Mir7031	Gm27859|mmu-mir-7031	microRNA 7031	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-152126933-2	chr4	152126833	152127033	+	620.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_207689, intron 7 of 9)	intron (NM_207689, intron 7 of 9)	1992.0	NM_019585	56226.0	Mm.264215	NM_019585	ENSMUSG00000028943	Espn	je	espin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31019112-4	chr14	31019014	31019214	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153547)	promoter-TSS (NM_153547)	17.0	NM_153547	30877.0	Mm.88512	NM_153547	ENSMUSG00000042354	Gnl3	Ns	guanine nucleotide binding protein-like 3 (nucleolar)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-157211664-2	chr3	157211564	157211764	+	802.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039094, intron 6 of 6)	RMER1A|Other|Other	322426.0	NR_152231	381498.0	Mm.402095	NR_152231	ENSMUSG00000105834	4930592C13Rik	Gm1657|Gm43159	RIKEN cDNA 4930592C13 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-35747030-4	chr5	35746935	35747135	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7048.0	NM_001359895	231147.0	Mm.290429	NM_194344	ENSMUSG00000036553	Sh3tc1	4631428G15|BC024909	SH3 domain and tetratricopeptide repeats 1	protein-coding	3.00561261138932	2.15727867141776	2.57004269409981	3.16132577125616	2.95783944249966	3.12908897318293	3.02794866946283	2.37426672416348	0.205841960807713	0.770725589646215	0.998431161219273
Merged-chr8-85505831-2	chr8	85505731	85505931	+	787.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_173866, intron 4 of 11)	intron (NM_173866, intron 4 of 11)	13214.0	NM_173866	108682.0	Mm.200423	NM_173866	ENSMUSG00000031700	Gpt2	4631422C05Rik|ALT2|AU014768|AU041193|C87201	glutamic pyruvate transaminase (alanine aminotransferase) 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-116136368-4	chr6	116136258	116136458	+	934.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177412, intron 2 of 5)	intron (NM_177412, intron 2 of 5)	57016.0	NM_177412	330401.0	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-31718308-3	chr11	31718220	31718420	+	998.8666380000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46458.0	NM_001024919	69556.0	Mm.34183	NM_001024919	ENSMUSG00000044502	Bod1	2310022M17Rik|BOD2.1|Fam44b	biorientation of chromosomes in cell division 1	protein-coding	3.36040465021045	3.10408267604187	1.84345976137793	2.1886193260449	2.87502165455655	3.12664000468054	2.82235329751275	2.93195483057101	0.281779469354416	0.704431445610601	0.998431161219273
Merged-chr17-50331607-1	chr17	50331507	50331707	+	665.0	f1_c57bl6.idr	Intergenic	Intergenic	-37987.0	NM_001277863	13164.0	Mm.280641	NM_010021	ENSMUSG00000010592	Dazl	Daz-like|Dazh|Dazl1|Dazla|Tpx-2|Tpx2	deleted in azoospermia-like	protein-coding	0.81172214064773	1.29919489685065	0.179719603106816	0.172875658313042	0.611857145008926	0.190444368462924	0.181662821846357	0.17407657201494	-2.36318157357238	0.246644012713571	1
Merged-chr2-130631310-4	chr2	130631043	130631243	+	819.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1105.0	NM_001255994	140629.0	Mm.486003	NM_080562	ENSMUSG00000027300	Ubox5	1500010O06Rik|C330018L13Rik|Rnf37|UIP5|Ubce7ip5|Ube7ip5	U box domain containing 5	protein-coding	2.05593161595437	1.92614268406139	0.960669513238512	1.66969572547385	0.915540347443388	1.65126815605068	2.42805312918844	0.945605027039336	-0.138563993849712	0.914988959182288	0.998431161219273
Merged-chr11-4123395-4	chr11	4123304	4123504	+	959.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-4675.0	NM_144520	67815.0	Mm.253922	NM_144520	ENSMUSG00000003585	Sec14l2	1300013M05Rik|Spf|TAP	SEC14-like lipid binding 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-89060102-1	chr11	89060002	89060202	+	797.0	f1_c57bl6.idr	promoter-TSS (NR_110336)	promoter-TSS (NR_110336)	646.0	NM_019505	56077.0	Mm.153695	NM_019505	ENSMUSG00000000276	Dgke	C87606|DAGK6|DGK	diacylglycerol kinase, epsilon	protein-coding	0.63839370794449	0.915763079867771	0.147912638462755	0.142461033273755	0.134710941738391	0.156518985168545	0.149466312204853	0.81886955332162	-0.893879725634436	0.672172259878885	1
Merged-chr11-8706110-4	chr11	8706012	8706212	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	AT_rich|Low_complexity|Low_complexity	-41577.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72395082-4	chr6	72394985	72395185	+	964.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4418.0	NM_016794	22320.0	Mm.1838	NM_016794	ENSMUSG00000050732	Vamp8	AU041171|Edb|endobrevin	vesicle-associated membrane protein 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-16079412-1	chr3	16079312	16079512	+	555.0	f1_balb.idr	Intergenic	Intergenic	-73080.0	NM_001081687	381484.0	Mm.217376	NM_001081687	ENSMUSG00000078780	Gm5150	-	predicted gene 5150	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-108790688-4	chr4	108790587	108790787	+	956.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9599.0	NM_001347163	230597.0	Mm.196776	NM_183300	ENSMUSG00000034557	Zfyve9	Madhip|NSP|SARA|SMADIP	zinc finger, FYVE domain containing 9	protein-coding	1.23210068607232	1.85854964423954	1.58810417278338	1.3029387891731	0.962183253865104	0.82852425622239	0.814219048518968	1.43474658052948	-1.95078127194323	0.147144033026512	0.597372245066125
Merged-chr6-115344258-2	chr6	115344158	115344358	+	720.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16693.0	NM_001127330	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-113342654-1	chr6	113342554	113342754	+	552.0	f0_balb.idr	intron (NM_133926, intron 1 of 11)	intron (NM_133926, intron 1 of 11)	1268.0	NM_133926	52163.0	Mm.277373	NM_133926	ENSMUSG00000030272	Camk1	AI505105|CaMKIalpha|D6Ertd263e	calcium/calmodulin-dependent protein kinase I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-139170462-2	chr4	139170354	139170554	+	596.333374	f0_balb.idr|f1_balb.idr	Intergenic	LTR79|LTR|ERVL	10201.0	NR_033543	100038595.0	Mm.385206	NR_033543	ENSMUSG00000073739	Gm16287	-	predicted gene 16287	ncRNA	2.18109213830621	2.69697502572585	3.24927982604699	4.10132170831944	4.73019686363543	3.83773098371302	3.91425388859459	2.34302445977504	1.00303319107743	0.144314541324767	0.593767767787634
Merged-chr3-95315228-4	chr3	95315092	95315292	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029789)	promoter-TSS (NM_029789)	2.0	NM_029789	76893.0	Mm.181009	NM_029789	ENSMUSG00000015714	Cers2	0610013I17Rik|AI225939|Lass2|TRH3	ceramide synthase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-4477217-7	chr12	4477104	4477304	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010881)	promoter-TSS (NM_010881)	-22.0	NM_010881	17977.0	Mm.301039	NM_010881	ENSMUSG00000020647	Ncoa1	KAT13A|NCoA-1|NRC-1|SRC-1|SRC-a|SRC1|bHLHe74|mNRC-1	nuclear receptor coactivator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-40469721-2	chr12	40469621	40469821	+	717.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	23668.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-29496390-4	chr19	29496277	29496477	+	844.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25610.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118701433-2	chr9	118701333	118701533	+	945.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 15 of 27)	intron (NM_133721, intron 15 of 27)	-10259.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-98542771-3	chr10	98542664	98542864	+	791.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-190897.0	NR_045179	667438.0	Mm.414522	NR_045179	ENSMUSG00000112896	Gm8633	EG667438	predicted gene 8633	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-39560924-4	chr18	39560818	39561018	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73673.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-13008408-2	chr18	13008308	13008508	+	757.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153087, intron 1 of 2)	intron (NM_153087, intron 1 of 2)	1418.0	NM_153087	225192.0	Mm.207073	NM_153087	ENSMUSG00000037346	Hrh4	AXOR35|BG26|GPCR105|GPRv53|H4|H4R|HH4R	histamine receptor H4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25703969-4	chr7	25703866	25704066	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011577, intron 5 of 6)	intron (NM_011577, intron 5 of 6)	15087.0	NM_028771	52132.0	Mm.278798	NM_028771	ENSMUSG00000002608	Ccdc97	1200014H14Rik|2810446P04Rik|AA545218|D7Ertd462e	coiled-coil domain containing 97	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24886543-4	chr17	24886419	24886619	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355396)	promoter-TSS (NM_001355396)	-124.0	NR_152137	79043.0	Mm.274794	NM_027141	ENSMUSG00000024160	Spsb3	2310012N15Rik|3300001M01Rik|SSB3|Tce1|mKIAA4204	splA/ryanodine receptor domain and SOCS box containing 3	protein-coding	7.43104967314918	6.25468139165897	7.53646019409242	7.42896870418205	7.27949193394789	7.33767162031196	7.28834162769629	7.52534605787859	0.113900777854921	0.5986148419842	0.972303230574462
Merged-chr11-102432239-4	chr11	102432159	102432359	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008175, intron 1 of 12)	intron (NM_008175, intron 1 of 12)	1937.0	NM_008175	14824.0	Mm.1568	NM_008175	ENSMUSG00000034708	Grn	Pgrn|epithelin	granulin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-58923787-2	chr2	58923687	58923887	+	753.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001362394, intron 10 of 13)	intron (NM_001362394, intron 10 of 13)	168603.0	NM_029692	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-8003233-2	chr10	8003133	8003333	+	563.583374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47110.0	NM_138667	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-56933013-4	chr18	56932934	56933134	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3226.0	NR_033455	100038410.0	Mm.353669	NR_033455		Gm10536	-	predicted gene 10536	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28766632-4	chr7	28766523	28766723	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001122765)	promoter-TSS (NM_001122765)	21.0	NM_001306222	18036.0	Mm.220333	NM_010908	ENSMUSG00000030595	Nfkbib	I(Kappa)B(beta)|I-kappa-B-beta|IKB-beta|IKappaBbeta|IkB|IkBb|NF-kappa-BIB|ikB-B	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-86947957-3	chr12	86947847	86948047	+	874.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173735, intron 1 of 3)	CpG	604.0	NM_001289432	217732.0	Mm.22337	NM_173735	ENSMUSG00000034157	Cipc	2310044G17Rik|AI842544|AI853744|Kiaa1737|mKIAA1737	CLOCK interacting protein, circadian	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-54485182-1	chr11	54485082	54485282	+	659.0	f0_balb.idr	intron (NM_173753, intron 6 of 17)	intron (NM_173753, intron 6 of 17)	-37663.0	NM_001252494	192786.0	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-47529356-2	chr9	47529256	47529456	+	689.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310841)	promoter-TSS (NM_001310841)	-814.0	NM_001310841	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41105149-2	chr19	41105072	41105272	+	722.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011904, intron 11 of 20)	intron (NM_011904, intron 11 of 20)	-28059.0	NM_153520	226115.0	Mm.54119	NM_153520	ENSMUSG00000050121	Opalin	Tmem10|Tmp10	oligodendrocytic myelin paranodal and inner loop protein	protein-coding	2.1830887619892	2.1915699538817	2.35695046716805	1.93423246484206	2.20005908564423	2.20668697467064	2.37462681584659	2.07774460029937	0.111048891520651	0.895552138228342	0.998431161219273
Merged-chr6-124756820-4	chr6	124756742	124756942	+	857.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007881)	promoter-TSS (NM_007881)	-355.0	NM_007881	13498.0	Mm.333380	NM_007881	ENSMUSG00000004263	Atn1	Atr1|Drpla|atrophin-1	atrophin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-47569247-2	chr14	47569122	47569322	+	781.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172599)	promoter-TSS (NM_172599)	-788.0	NM_172599	100504663.0	Mm.287279	NM_172599	ENSMUSG00000037526	Atg14	4832427M01|Atg14L|D14Ertd114e|D14Ertd436e	autophagy related 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-39005274-2	chr6	39005174	39005374	+	795.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 5 of 12)	ORR1F|LTR|ERVL-MaLR	62312.0	NR_040523	69986.0	Mm.490941	NR_040523	ENSMUSG00000100121	1700025N23Rik	-	RIKEN cDNA 1700025N23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-60792143-4	chr18	60792035	60792235	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-11714.0	NM_001042605	16149.0	Mm.439737	NM_010545	ENSMUSG00000024610	Cd74	CLIP|DHLAG|HLADG|Ia-GAMMA|Ii	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	protein-coding	4.27969456793338	3.86570342162255	4.01385230951346	4.56018091240622	3.3942705813924	4.04248341934255	2.37856700446885	3.86139583742791	-0.91947275877139	0.0785041866033844	0.426787534215317
Merged-chr3-101713187-2	chr3	101713087	101713287	+	675.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-108480.0	NM_144900	11928.0	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-11007270-4	chr8	11007176	11007376	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_046017)	promoter-TSS (NR_046017)	-574.0	NR_046017	619321.0	Mm.403007	NR_046017	ENSMUSG00000096938	9530052E02Rik	-	RIKEN cDNA 9530052E02 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-61245456-2	chr18	61245356	61245556	+	585.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146086, intron 5 of 21)	(A)n|Simple_repeat|Simple_repeat	24957.0	NM_146086	225600.0	Mm.391106	NM_146086	ENSMUSG00000024575	Pde6a	Pdea|nmf282	phosphodiesterase 6A, cGMP-specific, rod, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-55750201-4	chr16	55750129	55750329	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	71909.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70488604-3	chr8	70488479	70488679	+	714.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1221.0	NM_182991	67937.0	Mm.23002	NM_182991	ENSMUSG00000035964	Tmem59l	5330410G16Rik	transmembrane protein 59-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-45146517-2	chr9	45146458	45146658	+	864.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013390, intron 1 of 4)	intron (NM_001013390, intron 1 of 4)	7516.0	NM_001013390	399548.0	Mm.335112	NM_001013390	ENSMUSG00000046480	Scn4b	Gm1471	sodium channel, type IV, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33024002-4	chr16	33023889	33024089	+	894.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178378, intron 8 of 10)	LTR41B|LTR|ERVL	32197.0	NM_178378	69707.0	Mm.227918	NM_178378	ENSMUSG00000035578	Iqcg	2400003L07Rik|G1-374-12|esgd12d|repro1|stubby12d	IQ motif containing G	protein-coding	3.45480668997	3.61065757799281	3.39820228780621	3.84189419534041	4.22243874722774	4.38863583553034	3.76731198417419	3.72693122303226	0.682496411767608	0.154120274939426	0.609540819282158
Merged-chr16-62045766-2	chr16	62045652	62045852	+	572.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	740964.0	NM_178925	106338.0	Mm.26321	NM_178925	ENSMUSG00000050312	Nsun3	6720484A09Rik|AU022521	NOL1/NOP2/Sun domain family member 3	protein-coding	-0.498981902373153	-0.744388551262053	-0.747320326093482	-0.237620288339165	-0.613281599263441	-0.743725836975061	-0.746674860146477	-0.749180059260959	-2.14508674055068	0.4388104754781	1
Merged-chr2-29935437-4	chr2	29935350	29935550	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028923)	promoter-TSS (NM_028923)	41.0	NM_028923	74412.0	Mm.275121	NM_028923	ENSMUSG00000019715	Gle1	4933405K21Rik|AA553313|Gle1l	GLE1 RNA export mediator (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-72262166-4	chr5	72262065	72262265	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_003966, intron 11 of 22)	intron (NR_003966, intron 11 of 22)	58822.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-127444595-4	chr2	127444539	127444739	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029629)	promoter-TSS (NM_029629)	-74.0	NM_029629	68126.0	Mm.288676	NM_029629	ENSMUSG00000027371	Fahd2a	1500003K14Rik|B430104H02Rik|Cgi-105|Fahd2	fumarylacetoacetate hydrolase domain containing 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-56171531-2	chr13	56171431	56171631	+	541.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7354.0	NM_145976	212937.0	Mm.116697	NM_145976	ENSMUSG00000049625	Tifab	-	TRAF-interacting protein with forkhead-associated domain, family member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16147804-2	chr7	16147707	16147907	+	889.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347561, intron 4 of 8)	intron (NM_001347561, intron 4 of 8)	17981.0	NM_148946	110891.0	Mm.241147	NM_148946	ENSMUSG00000030376	Slc8a2	Ncx2	solute carrier family 8 (sodium/calcium exchanger), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-60606632-2	chr13	60606532	60606732	+	693.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	4421.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-127774644-1	chr1	127774544	127774744	+	1000.0	f0_c57.idr	promoter-TSS (NR_045298)	promoter-TSS (NR_045298)	480.0	NM_028399	72949.0	Mm.268672	NM_028399	ENSMUSG00000026349	Ccnt2	2900041I18Rik|C81304|CycT2|CycT2a|CycT2b	cyclin T2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-26805442-2	chr11	26805342	26805542	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20334.0	NR_002890	654472.0	Mm.347777	NR_002890		Gm12070	-	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-64151743-4	chr13	64151640	64151840	+	902.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361047, intron 1 of 5)	intron (NM_001361047, intron 1 of 5)	633.0	NM_001361047	238673.0	Mm.300065	NM_175494	ENSMUSG00000044934	Zfp367	8030486J21Rik|ZFF29a|ZFF29b|Znf367	zinc finger protein 367	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-99543719-2	chr5	99543619	99543819	+	612.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 2 of 3)	MLT1K|LTR|ERVL-MaLR	185341.0	NR_030692	319818.0	Mm.295233	NR_030692	ENSMUSG00000089809	A930011G23Rik	-	RIKEN cDNA A930011G23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-78353286-4	chr11	78353182	78353382	+	832.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6572.0	NM_001313987	22248.0	Mm.284811	NM_011676	ENSMUSG00000002058	Unc119	D11Bhm52|HRG4|MRG4|Rg4|Rtg4|Unc119h	unc-119 lipid binding chaperone	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-79618308-3	chr2	79618195	79618395	+	941.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17130.0	NM_080558	70599.0	Mm.272881	NM_080558	ENSMUSG00000027007	Ssfa2	5730488C15Rik|CS-1|CS1|KRAP|SPAG13|mKIAA1927	sperm specific antigen 2	protein-coding	0.823158717186299	0.90955344230178	0.882669217257989	0.861035666401263	1.80596689082044	2.07137531040758	2.53190003103031	2.37128965547993	5.62630329960421	3.67881622513773e-05	0.00136351293648396
Merged-chr9-122865938-4	chr9	122865831	122866031	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173364)	promoter-TSS (NM_173364)	75.0	NM_001359935	235682.0	Mm.326477	NM_173364	ENSMUSG00000047036	Zfp445	AW610627|ZNF168|Znf445|mszf29|mszf50	zinc finger protein 445	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19524339-2	chr7	19524239	19524439	+	818.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_027116, exon 4 of 4)	exon (NM_027116, exon 4 of 4)	5608.0	NM_027116	69547.0	Mm.77325	NM_027116	ENSMUSG00000060621	Nkpd1	2310015G09Rik	NTPase, KAP family P-loop domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-145257257-2	chr7	145257110	145257310	+	986.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_132642, exon 19 of 24)	non-coding (NR_132642, exon 19 of 24)	26801.0	NR_132644	233979.0	Mm.102235	NM_146206	ENSMUSG00000048677	Tpcn2	D830047E22Rik|Gm35086	two pore segment channel 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-91144985-1	chr1	91144885	91145085	+	586.0	f1_c57bl6.idr	promoter-TSS (NM_001033408)	promoter-TSS (NM_001033408)	-118.0	NM_001033408	329207.0	Mm.295940	NM_001033408	ENSMUSG00000070732	Rbm44	Gm817	RNA binding motif protein 44	protein-coding	1.93519487319869	2.35309553099174	3.03969644441355	3.51698552882472	1.79962594924635	1.30066557710797	1.26177368550889	2.45014018335073	-2.25654610161642	0.0194080026284902	0.175997555130228
Merged-chr17-34964937-2	chr17	34964837	34965037	+	664.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5699.0	NM_010478	15511.0	Mm.372314	NM_010478	ENSMUSG00000090877	Hspa1b	Hsp70|Hsp70-1|Hsp70.1|hsp68	heat shock protein 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-44455696-2	chr17	44455596	44455796	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	267124.0	NM_172621	224796.0	Mm.37666	NM_172621	ENSMUSG00000023959	Clic5	5730531E12Rik|B330005L24|Gm322|jbg|nmf318	chloride intracellular channel 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-152106616-2	chr3	152106516	152106716	+	879.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016867, intron 4 of 5)	MTE2a|LTR|ERVL-MaLR	59284.0	NM_016867	54120.0	Mm.97	NM_016867	ENSMUSG00000039131	Gipc2	2200002N01Rik|AU021850|Semcap2	GIPC PDZ domain containing family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-100525398-4	chr9	100525293	100525493	+	849.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010878, intron 1 of 3)	L1M4c|LINE|L1	-18537.0	NM_001324530	17973.0	Mm.181485	NM_010878	ENSMUSG00000032475	Nck1	6330586M15Rik|D230010O13Rik|Nck|Nck-1	non-catalytic region of tyrosine kinase adaptor protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-6516137-4	chr18	6515997	6516197	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007935)	promoter-TSS (NM_007935)	11.0	NM_007935	13831.0	Mm.312133	NM_007935	ENSMUSG00000024240	Epc1	2400007E14Rik|5730566F07Rik|A930032N02Rik|mir-1893	enhancer of polycomb homolog 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-42937673-4	chr17	42937571	42937771	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61247.0	NM_009847	12488.0	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-76589320-4	chr11	76589181	76589381	+	990.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11542.0	NM_198894	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-32801522-3	chr14	32801405	32801605	+	724.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163616, intron 1 of 4)	intron (NM_001163616, intron 1 of 4)	15542.0	NM_001163616	69069.0	Mm.261609	NM_001163616	ENSMUSG00000041707	1810011H11Rik	4733401I05Rik	RIKEN cDNA 1810011H11 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-31367431-11	chr15	31367334	31367534	+	877.4560550000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_026153, exon 1 of 2)	5' UTR (NM_026153, exon 1 of 2)	325.0	NM_001357923	67434.0	Mm.102470	NM_026153	ENSMUSG00000022237	Ankrd33b	0610012A05Rik|3021401C12Rik|5730557B15Rik	ankyrin repeat domain 33B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-70912059-4	chr12	70911954	70912154	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25803.0	NM_019785	56444.0	Mm.29317	NM_019785	ENSMUSG00000021076	Actr10	Actr11|Arp11	ARP10 actin-related protein 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3938244-2	chr4	3938144	3938344	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001190322)	promoter-TSS (NM_001190322)	161.0	NM_019969	56711.0	Mm.331467	NM_019969	ENSMUSG00000003282	Plag1	-	pleiomorphic adenoma gene 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-23868527-4	chr18	23868393	23868593	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162941, intron 5 of 7)	intron (NM_001162941, intron 5 of 7)	64523.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-75075428-4	chr14	75075323	75075523	+	967.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030568, intron 2 of 3)	intron (NR_030568, intron 2 of 3)	55460.0	NM_027581	70859.0	Mm.320289	NM_027581	ENSMUSG00000021997	Lrrc63	4921509B22Rik	leucine rich repeat containing 63	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-74618690-4	chr5	74618585	74618785	+	962.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359074, intron 5 of 10)	intron (NM_001359074, intron 5 of 10)	59187.0	NM_001159580	16924.0	Mm.440403	NM_010727	ENSMUSG00000029228	Lnx1	Lnx	ligand of numb-protein X 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-77293021-4	chr5	77292923	77293123	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17063.0	NM_019836	56412.0	Mm.129136	NM_019836	ENSMUSG00000036285	Noa1	2610024G14Rik|AU022345|AtNOS1|mAtNOS1	nitric oxide associated 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-130189124-2	chr4	130189024	130189224	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14002.0	NM_023476	94242.0	Mm.15801	NM_023476	ENSMUSG00000028776	Tinagl1	1110021J17Rik|AZ-1|AZ1|Arg1|Lcn7|TARP|Tinagl	tubulointerstitial nephritis antigen-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-4405102-4	chr10	4404997	4405197	+	732.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358796, intron 12 of 13)	intron (NM_001358796, intron 12 of 13)	-16989.0	NM_001033466	381990.0	Mm.262466	NM_001033466	ENSMUSG00000075327	Zbtb2	Gm1103	zinc finger and BTB domain containing 2	protein-coding	3.74982707124728	4.27593583427977	3.53023819309381	3.77254918820468	2.70294880215934	2.75577098596875	2.81081138164236	3.66553898118111	-1.23797681492924	0.0297101281814324	0.235340306725897
Merged-chr15-25896420-2	chr15	25896320	25896520	+	659.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001034851, intron 3 of 8)	intron (NM_001034851, intron 3 of 8)	-37132.0	NM_001277318	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78174297-4	chr15	78174194	78174394	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025931)	promoter-TSS (NM_025931)	-186.0	NM_025931	67042.0	Mm.30191	NM_025931	ENSMUSG00000016637	Ift27	2600013G09Rik|Rabl4	intraflagellar transport 27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-130278335-4	chr5	130278236	130278436	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153350, intron 8 of 15)	intron (NR_153350, intron 8 of 15)	21299.0	NM_001015876	100929.0	Mm.271296	NM_178897	ENSMUSG00000056310	Tyw1	AW125391|Rsafd1	tRNA-yW synthesizing protein 1 homolog (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132817028-2	chr4	132816928	132817128	+	887.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20664.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-50842697-4	chr14	50842601	50842801	+	944.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009351, intron 28 of 54)	MTE2b|LTR|ERVL-MaLR	27853.0	NM_009351	21745.0	Mm.318736	NM_009351	ENSMUSG00000006281	Tep1	Tp1	telomerase associated protein 1	protein-coding	3.8060400050696	4.05322901733331	5.16065770379134	4.95150997858371	3.83790429624315	4.22637460382218	3.94799048807464	3.66886453575973	-0.89345825738045	0.0525509880507038	0.33513824661535
Merged-chr7-27244228-2	chr7	27244128	27244328	+	759.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_133770, intron 10 of 14)	intron (NM_133770, intron 10 of 14)	11215.0	NM_133770	76889.0	Mm.124728	NM_133770	ENSMUSG00000003762	Coq8b	0610012P18Rik|Adck4	coenzyme Q8B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-132104693-2	chr2	132104593	132104793	+	593.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355430, intron 1 of 15)	intron (NM_001355430, intron 1 of 15)	40415.0	NM_001355431	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-84866329-2	chr2	84866229	84866429	+	590.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	20363.0	NM_199223	269295.0	Mm.86447	NM_199223	ENSMUSG00000050896	Rtn4rl2	Ngr2|Ngrh1|Ngrl3	reticulon 4 receptor-like 2	protein-coding	-0.426465941929648	-0.413012283059192	-0.417412634504304	0.129349663866619	-0.425624174334604	-0.412021331983819	0.285186956140566	-0.42021819057434	0.494743600977765	0.854478008995306	1
Merged-chr2-112231391-2	chr2	112231291	112231491	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8450.0	NM_207206	99010.0	Mm.33438	NM_207206	ENSMUSG00000027134	Lpcat4	AI505034|Agpat7|Aytl3|LPEAT2	lysophosphatidylcholine acyltransferase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131526077-2	chr1	131525977	131526177	+	851.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081011, intron 1 of 22)	CpG	1284.0	NM_001081011	14270.0	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-10909958-3	chr8	10909865	10910065	+	659.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	10043.0	NR_102285	71624.0	Mm.139075	NR_102285	ENSMUSG00000109089	4833411C07Rik	-	RIKEN cDNA 4833411C07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-29788312-2	chr11	29788212	29788412	+	760.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146016, intron 24 of 41)	(CA)n|Simple_repeat|Simple_repeat	37356.0	NM_176829	216622.0	Mm.443260	NM_176829	ENSMUSG00000078157	4931440F15Rik	Fem1ab	RIKEN cDNA 4931440F15 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-59180849-4	chr11	59180739	59180939	+	836.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080454, intron 1 of 1)	L1MD3|LINE|L1	1987.0	NM_175452	118454.0	Mm.40016	NM_080454	ENSMUSG00000043448	Gjc2	B230382L12Rik|Cx47|Gja12	gap junction protein, gamma 2	protein-coding	1.25982495176876	2.59077527677531	3.33166985348866	2.97856255506837	2.42034422564333	1.41337551517818	2.24299250648036	2.99416830456654	-0.682048346512591	0.474486989583186	0.926577946129404
Merged-chr16-48994107-4	chr16	48993998	48994198	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356425)	promoter-TSS (NM_001356425)	14.0	NM_027341	224170.0	Mm.275138	NM_027341	ENSMUSG00000064061	Dzip3	2310047C04Rik|2A-HUB|6430549P11Rik|A230104G20	DAZ interacting protein 3, zinc finger	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-108327184-4	chr4	108327149	108327349	+	986.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027250)	promoter-TSS (NM_027250)	-903.0	NM_027250	69893.0	Mm.28354	NM_027250	ENSMUSG00000048351	Coa7	2010305A19Rik|AI451324|D4Ertd796e|Selrc1	cytochrome c oxidase assembly factor 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-108529569-4	chr6	108529492	108529692	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 60 of 61)	intron (NM_010585, intron 60 of 61)	39849.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	6.06024130528264	6.01323559978487	6.2187216418539	6.43102051395143	6.63899262667186	6.83451114083575	6.86750592020057	6.60342720452296	0.587296673710241	0.00333283780489911	0.0489328733126236
Merged-chr17-47772113-2	chr17	47772013	47772213	+	618.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161723, intron 1 of 8)	intron (NM_001161723, intron 1 of 8)	-13631.0	NM_011549	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	0.039524422910781	-0.584015058130253	-0.587569345382929	-0.167939531041162	-0.594169294080427	-0.583212987198297	-0.586785975577609	-0.589829136416591	-3.36268266924163	0.228208989188394	1
Merged-chr7-80802014-2	chr7	80801810	80802010	+	635.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_016721, intron 1 of 37)	intron (NM_016721, intron 1 of 37)	1421.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	-1.18551167796162	-1.16005248636864	-1.17110304385026	-1.01209399470354	-1.18502602943809	-0.660555406792769	-1.16860143985775	-1.17855547613505	1.59335090849861	0.626683724182891	1
Merged-chr11-35308668-4	chr11	35308575	35308775	+	944.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011412, intron 4 of 35)	intron (NM_011412, intron 4 of 35)	187219.0	NM_011412	20564.0	Mm.478604	NM_011412	ENSMUSG00000056427	Slit3	Slil2|Slit1|b2b2362.1Clo	slit guidance ligand 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-154333804-2	chr3	154333716	154333916	+	580.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040387, exon 3 of 3)	non-coding (NR_040387, exon 3 of 3)	2995.0	NR_040387	99686.0	Mm.38082	NR_040387	ENSMUSG00000093738	AI606473	-	expressed sequence AI606473	ncRNA	-1.7024385483431	-1.81249224917775	-1.82134771053534	-1.82862185015837	-1.70038292649591	-1.81057323376012	-1.81934302819017	-1.82731978264371	0.0376840119903864	0.991491645451152	1
Merged-chr13-69537533-2	chr13	69537433	69537633	+	597.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3669.0	NM_001169131	210106.0	Mm.315959	NM_198600	ENSMUSG00000034575	Papd7	LAK-1|POLK|Pols|TRF4|TRF4-1	PAP associated domain containing 7	protein-coding	-0.645243038227189	-0.880537549420292	-0.886827930830886	-0.888744806905892	-0.63933907627877	-0.878030155933023	-0.886278140745924	-0.601712192729879	0.991667440912732	0.734943437307452	1
Merged-chr16-85173228-2	chr16	85173145	85173345	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_001198825, intron 1 of 15)	CpG	462.0	NM_001198825	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	2.66190414407722	3.34634792899472	1.39040698904478	2.36210242848149	3.84423623277667	2.68902403088469	1.69309161646317	2.37550727051487	0.521827204270479	0.562223468976286	0.960362415684079
Merged-chr2-6562611-1	chr2	6562511	6562711	+	543.0	f1_c57bl6.idr	intron (NM_001110232, intron 11 of 15)	L1M4b|LINE|L1	159051.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-19098963-5	chr10	19098937	19099137	+	952.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42712.0	NR_038021	100504265.0	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-33251914-3	chr4	33251814	33252014	+	937.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3127.0	NM_001033225	108767.0	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46620142-2	chr19	46620042	46620242	+	557.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177812, intron 2 of 4)	intron (NM_001177812, intron 2 of 4)	-3259.0	NM_001177813	226178.0	Mm.329895	NM_146099	ENSMUSG00000047731	Wbp1l	D19Wsu162e|Opal1	WW domain binding protein 1 like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-50459701-4	chr9	50459598	50459798	+	995.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34827.0	NM_029639	76509.0	Mm.29959	NM_029639	ENSMUSG00000032068	Plet1	0610037B23Rik|1600029D21Rik|AA407923|AU043048	placenta expressed transcript 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-33807044-3	chr18	33806944	33807144	+	837.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013512, intron 19 of 23)	intron (NM_013512, intron 19 of 23)	12152.0	NR_038151	69749.0	Mm.248787	NR_038151	ENSMUSG00000087590	Epb41l4aos	2410004N09Rik|Epb4.1l4aos	erythrocyte membrane protein band 4.1 like 4a, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-86142495-3	chr17	86142383	86142583	+	816.472229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030133, intron 1 of 20)	intron (NM_030133, intron 1 of 20)	2692.0	NM_030133	78586.0	Mm.146236	NM_030133	ENSMUSG00000024135	Srbd1	AI461933|C85414|D530025C17Rik	S1 RNA binding domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-105271403-4	chr4	105271304	105271504	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	114057.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	4.07107489738596	3.79409961782424	4.57849501670076	4.6244969802412	3.94579101856026	3.40022459415617	4.37114013769435	4.39368664327484	-0.298305997829105	0.507722821421306	0.943374049681311
Merged-chr10-80578583-4	chr10	80578515	80578715	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1319.0	NM_078477	118445.0	Mm.41513	NM_078477	ENSMUSG00000035397	Klf16	AI843742|BTEB4|DRRF	Kruppel-like factor 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-136986801-2	chr2	136986701	136986901	+	625.666626	f1_balb.idr|f1_c57bl6.idr	intron (NR_149746, intron 4 of 8)	intron (NR_149746, intron 4 of 8)	87450.0	NM_001038641	74243.0	Mm.330612	NM_028201	ENSMUSG00000027281	Slx4ip	2210009G21Rik|2410004I22Rik|C85661|Slxip	SLX4 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128033520-2	chr10	128033420	128033620	+	701.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1826.0	NM_013608	17938.0	Mm.3746	NM_013608	ENSMUSG00000061315	Naca	AL022831|AL024382|Gm1878|mKIAA0363|skNAC	nascent polypeptide-associated complex alpha polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-172437778-4	chr2	172437672	172437872	+	974.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2806.0	NM_025542	66404.0	Mm.25157	NM_025542	ENSMUSG00000027502	Rtf2	1700067C04Rik|2410001C21Rik|5730427M17Rik|AA589417|Rtfdc1	replication termination factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70708358-2	chr8	70708258	70708458	+	722.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10185.0	NM_001195253	100502950.0	Mm.52981	NM_001195253	ENSMUSG00000095026	Gm3336	100041434|2410018E23Rik	predicted gene 3336	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-145942163-4	chr3	145942067	145942267	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151445, intron 3 of 3)	intron (NR_151445, intron 3 of 3)	4153.0	NR_151446	66421.0	Mm.25137	NM_025555	ENSMUSG00000036873	2410004B18Rik	4930572C24Rik	RIKEN cDNA 2410004B18 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-57423504-2	chr14	57423404	57423604	+	665.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009376)	promoter-TSS (NM_009376)	-567.0	NM_009376	21821.0	Mm.4653	NM_009376	ENSMUSG00000040040	Ift88	AW552028|Tg737|Tg737Rpw|TgN737Rpw|Ttc10|flexo|fxo|orpk|polaris	intraflagellar transport 88	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-51066593-2	chr13	51066493	51066693	+	711.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	34134.0	NR_029463	77428.0	Mm.405630	NR_029463		9430083A17Rik	-	RIKEN cDNA 9430083A17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-24101277-2	chr1	24101223	24101423	+	882.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026604)	promoter-TSS (NM_026604)	-982.0	NM_026604	68187.0	Mm.87130	NM_026604	ENSMUSG00000026153	Fam135a	4921533L14Rik|AI256732|AI835491	family with sequence similarity 135, member A	protein-coding	-0.845703690426083	-0.836104280848431	-0.672235966086977	-0.84229868760407	-0.588332984141911	-0.833485434488285	-0.839644639857939	-0.433264046503255	1.93915050739643	0.495461497602355	1
Merged-chr11-116087583-4	chr11	116087472	116087672	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347642)	promoter-TSS (NM_001347642)	-577.0	NM_001347642	22378.0	Mm.284792	NM_016852	ENSMUSG00000034341	Wbp2	-	WW domain binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-17656605-2	chr16	17656505	17656705	+	962.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285886, intron 8 of 16)	intron (NM_001285886, intron 8 of 16)	10135.0	NM_001166164	72315.0	Mm.297777	NM_001166164	ENSMUSG00000041617	Ccdc74a	2310015A05Rik	coiled-coil domain containing 74A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-49462686-4	chr7	49462585	49462785	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175272, intron 9 of 37)	intron (NM_175272, intron 9 of 37)	174150.0	NM_001005232	13172.0	Mm.307176	NM_001005232	ENSMUSG00000030507	Dbx1	AI426026|Dbx	developing brain homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98018947-4	chr11	98018838	98019038	+	872.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159320)	promoter-TSS (NM_001159320)	-566.0	NM_001159320	12295.0	Mm.41252	NM_031173	ENSMUSG00000020882	Cacnb1	CAB1|Cchb1|Cchlb1	calcium channel, voltage-dependent, beta 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-100675120-4	chr6	100674901	100675101	+	928.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	-3844.0	NM_181590	72171.0	Mm.256022	NM_181590	ENSMUSG00000035378	Shq1	2810403P18Rik|Grim-1	SHQ1 homolog (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127566107-2	chr10	127565995	127566195	+	908.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 41 of 88)	intron (NM_008512, intron 41 of 88)	-31536.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	-0.960992954429467	-0.767344367703387	-0.9558446391757	-0.666733215436962	-0.960517378878054	-0.943486776974363	-0.954840548947145	-0.66253290932263	-0.583213273770169	0.84429509431705	1
Merged-chr11-86579061-4	chr11	86578987	86579187	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5071.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27536948-1	chr17	27536848	27537048	+	558.0	f1_balb.idr	Intergenic	Intergenic	-19626.0	NM_001166536	15361.0	Mm.4438	NM_016660	ENSMUSG00000046711	Hmga1	AL023995|Hmga1a|Hmga1b|Hmgi|Hmgiy|Hmgy	high mobility group AT-hook 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6966631-2	chr19	6966531	6966731	+	669.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290349, intron 2 of 30)	intron (NM_001290349, intron 2 of 30)	3183.0	NM_008874	18797.0	Mm.273204	NM_008874	ENSMUSG00000024960	Plcb3	mKIAA4098	phospholipase C, beta 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-66811173-4	chr14	66811080	66811280	+	883.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009955, intron 11 of 13)	intron (NM_009955, intron 11 of 13)	57420.0	NM_009955	12934.0	Mm.352648	NM_009955	ENSMUSG00000022048	Dpysl2	AI851130|Crmp2|DRP2|Musunc33|TOAD-64|Ulip2	dihydropyrimidinase-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-65703434-3	chr5	65703353	65703553	+	897.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5597.0	NM_001081321	71521.0	Mm.278974	NM_027818	ENSMUSG00000029202	Pds5a	9030416H16Rik|E230024D05Rik|mKIAA0648	PDS5 cohesin associated factor A	protein-coding	2.94328391980808	2.08187880912579	3.02872203819629	2.76546117612796	2.3229577846138	2.09707096818021	2.521693350631	3.53415598788808	0.0135049408988531	0.986127794697757	0.998431161219273
Merged-chr15-25553690-2	chr15	25553590	25553790	+	603.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68860.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-68011382-4	chr15	68011297	68011497	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	247459.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	4.52814145441552	4.44943507183716	4.61660123356527	4.58571454621451	4.5986854588114	4.88275010561681	4.27993426613674	3.88597213653078	-0.112874559228965	0.770499106697122	0.998431161219273
Merged-chr4-148045002-4	chr4	148044880	148045080	+	953.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027809, intron 4 of 12)	intron (NR_027809, intron 4 of 12)	3791.0	NM_001161798	17769.0	Mm.89959	NM_010840	ENSMUSG00000029009	Mthfr	AI323986	methylenetetrahydrofolate reductase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-136893016-4	chr4	136892918	136893118	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007574)	promoter-TSS (NM_007574)	-104.0	NM_007574	12262.0	Mm.439732	NM_007574	ENSMUSG00000036896	C1qc	AI385742|C1qg|Ciqc	complement component 1, q subcomponent, C chain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-172312353-4	chr1	172312256	172312456	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080419)	promoter-TSS (NM_080419)	-11.0	NM_080419	140559.0	Mm.271717	NM_080419	ENSMUSG00000038034	Igsf8	ESTM34|EWI-2|KCT-4|PGRL	immunoglobulin superfamily, member 8	protein-coding	4.16316822660049	3.79288229945201	3.74894400824004	4.69326878735888	4.05069413091665	4.45059743139707	4.00616083619121	4.19007608067262	0.0230674923369342	0.958196266669368	0.998431161219273
Merged-chr15-53724341-4	chr15	53724250	53724450	+	792.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177225, intron 2 of 4)	intron (NM_177225, intron 2 of 4)	-110071.0	NR_039538	100628567.0		NR_039538	ENSMUSG00000104794	Mir28c	mmu-mir-28c	microRNA 28c	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-14641871-4	chr9	14641748	14641948	+	960.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21174.0	NR_152172	665374.0	Mm.387249	NR_152172	ENSMUSG00000111085	Gm7607	EG665374	predicted gene 7607	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-8305454-2	chr17	8305354	8305554	+	605.333313	f1_balb.idr|f1_c57bl6.idr	intron (NR_073374, intron 1 of 4)	intron (NR_073374, intron 1 of 4)	-5634.0	NM_001357890	106489.0	Mm.311080	NM_134114	ENSMUSG00000073468	Sft2d1	5630401J11Rik|AA409698	SFT2 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-41138692-3	chr8	41138601	41138801	+	702.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4975.0	NM_001005863	102103.0	Mm.149438	NM_001005863	ENSMUSG00000045636	Mtus1	AI481402|ATBP135|Atip1|B430010I23Rik|B430305I03Rik|C85752|Cctsg1-440|MD44|MTSG1|mKIAA1288	mitochondrial tumor suppressor 1	protein-coding	0.630924106404585	1.25978082268977	0.495597689581534	1.15410513917514	0.887717105102867	0.506388164912929	0.987230760744028	0.489959667885008	-0.985092793105211	0.552432637355961	1
Merged-chr11-51922548-3	chr11	51922477	51922677	+	786.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45054.0	NM_029976	52626.0	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-55471780-2	chr11	55471680	55471880	+	832.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_013716, intron 1 of 11)	intron (NM_013716, intron 1 of 11)	2028.0	NM_013716	27041.0	Mm.39631	NM_013716	ENSMUSG00000018583	G3bp1	AI849976|B430204O07|C87777|G3bp|mKIAA4115	GTPase activating protein (SH3 domain) binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-83645645-4	chr7	83645543	83645743	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360088, intron 18 of 18)	intron (NM_001360088, intron 18 of 18)	9852.0	NM_001360089	16170.0	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41969594-2	chr19	41969516	41969716	+	647.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028152, intron 2 of 30)	intron (NM_028152, intron 2 of 30)	11520.0	NM_028152	72199.0	Mm.218940	NM_028152	ENSMUSG00000025159	Mms19	2410001K24Rik|2610042O15Rik|AI316855|C79368|C86341|Mms19l	MMS19 (MET18 S. cerevisiae)	protein-coding	-0.433419496605968	0.346328138972417	-0.423626616881733	-0.42729803101504	-0.43250674661367	0.116408396509669	-0.422579234343479	-0.426655786864084	-0.714747771474442	0.789037825580491	1
Merged-chr6-71444349-4	chr6	71444253	71444453	+	893.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-3716.0	NM_024288	68477.0	Mm.28474	NM_024288	ENSMUSG00000002222	Rmnd5a	1110007A06Rik|AJ237586|AW125795|Gid2|MTA.D02.090	required for meiotic nuclear division 5 homolog A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-21662597-3	chr14	21662491	21662691	+	764.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017479, intron 15 of 16)	intron (NM_017479, intron 15 of 16)	51985.0	NM_001013826	435391.0	Mm.295860	NM_001013826	ENSMUSG00000063821	Dupd1	EG435391	dual specificity phosphatase and pro isomerase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-79848210-4	chr7	79848111	79848311	+	881.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008486)	promoter-TSS (NM_008486)	-1.0	NM_008486	16790.0	Mm.4487	NM_008486	ENSMUSG00000039062	Anpep	AP-M|AP-N|Apn|Cd13|P150	alanyl (membrane) aminopeptidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-21636346-4	chr16	21636254	21636454	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081366, intron 45 of 46)	intron (NM_001081366, intron 45 of 46)	58311.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-47168368-4	chr19	47168254	47168454	+	841.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10466.0	NM_021360	18011.0	Mm.313651	NM_021360	ENSMUSG00000006435	Neurl1a	2410129E16Rik|AI450910|AI481072|Neu1|Neur1|Neurl|Neurl1|Nlz|Rnf67	neuralized E3 ubiquitin protein ligase 1A	protein-coding	-0.0564836956671591	0.45049539345755	0.520396049948868	-0.0497951107528365	-0.0554890304647066	0.459953150715453	-0.0446108386657021	-0.0490909572619663	-1.12426150417277	0.623830518825198	1
Merged-chr11-11686211-4	chr11	11686107	11686307	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001301868, exon 1 of 8)	5' UTR (NM_001301868, exon 1 of 8)	282.0	NM_001025597	22778.0	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-113931668-4	chr9	113931581	113931781	+	992.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001083319, exon 2 of 17)	exon (NM_001083319, exon 2 of 17)	747.0	NM_013699	22221.0	Mm.28052	NM_013699	ENSMUSG00000009741	Ubp1	Cp2b|LBP-1a|LBP-1b|NF2d9	upstream binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-151058094-4	chr4	151058007	151058207	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009498)	promoter-TSS (NM_009498)	-154.0	NM_009498	22319.0	Mm.273930	NM_009498	ENSMUSG00000028955	Vamp3	D130027G05Rik|VAMP-3|ceb	vesicle-associated membrane protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-9764086-4	chr13	9763971	9764171	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347476)	promoter-TSS (NM_001347476)	-261.0	NM_001347476	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69685404-4	chr11	69685288	69685488	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011614)	TTS (NM_011614)	166.0	NM_001159505	69583.0	Mm.8983	NM_023517	ENSMUSG00000089669	Tnfsf13	2310026N09Rik|April|Tall2|Tnlg7b|Trdl1	tumor necrosis factor (ligand) superfamily, member 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-34512065-3	chr18	34511978	34512178	+	853.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5255.0	NM_146084	225358.0	Mm.226899	NM_146084	ENSMUSG00000036501	Fam13b	2610024E20Rik|AW060714|AW546153	family with sequence similarity 13, member B	protein-coding	-0.998561219697876	-0.979509657844583	-0.803689334548908	-0.994593044209597	-0.997970433286981	-0.33218188208555	-0.989215455483101	-0.994175918223684	2.0129735063392	0.513610944272072	1
Merged-chr14-56884069-2	chr14	56883969	56884169	+	835.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-2534.0	NM_177627	76007.0	Mm.31417	NM_029498	ENSMUSG00000021945	Zmym2	5830413P05Rik|FIM|MYM|RAMP|SCLL|Zfp198|Znf198	zinc finger, MYM-type 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-23422620-2	chr13	23422520	23422720	+	737.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_013924, exon 2 of 3)	exon (NM_013924, exon 2 of 3)	1246.0	NM_013924	30946.0	Mm.292094	NM_013924	ENSMUSG00000036376	Abt1	-	activator of basal transcription 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-18503724-2	chr5	18503624	18503824	+	641.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-143311.0	NM_010305	14677.0	Mm.254629	NM_010305	ENSMUSG00000057614	Gnai1	AU046200|Gialpha1|Gnai-1	guanine nucleotide binding protein (G protein), alpha inhibiting 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141929098-2	chr4	141929092	141929292	+	699.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_177868, intron 17 of 31)	intron (NM_177868, intron 17 of 31)	-53800.0	NR_040672	545691.0	Mm.332015	NR_040672	ENSMUSG00000085424	Fhad1os1	Gm13037	forkhead-associated (FHA) phosphopeptide binding domain 1, opposite strand 1	ncRNA	-1.23826193677681	-1.21241040182355	-1.22270105026776	-0.934241458926562	-1.23783648736863	-1.21018037537722	-1.22037147302458	-0.929982742503718	0.0323590357436516	0.9924297640193	1
Merged-chr17-10372434-6	chr17	10372324	10372524	+	982.388916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F1|SINE|Alu	47822.0	NR_045461	76634.0	Mm.491052	NR_045461	ENSMUSG00000099384	1700110C19Rik	-	RIKEN cDNA 1700110C19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-40637583-2	chr12	40637483	40637683	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 6 of 52)	intron (NM_172803, intron 6 of 52)	191530.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107630790-1	chr9	107630690	107630890	+	722.0	f1_c57bl6.idr	intron (NM_008138, intron 1 of 8)	intron (NM_008138, intron 1 of 8)	4552.0	NM_008138	14678.0	Mm.196464	NM_008138	ENSMUSG00000032562	Gnai2	C76432|Galphai2|Gia|Gnai-2	guanine nucleotide binding protein (G protein), alpha inhibiting 2	protein-coding	0.632412000603216	0.254005390932512	1.13719631004547	0.41690934720436	0.839547226654497	0.255685109974985	0.248179572580459	0.241738877098817	-1.32666082126239	0.489389249890554	1
Merged-chr3-69195948-2	chr3	69195852	69196052	+	814.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1E1|LTR|ERVL-MaLR	-26467.0	NM_027843	71619.0	Mm.98122	NM_027843	ENSMUSG00000098207	Arl14	9130014L17Rik|Arf7	ADP-ribosylation factor-like 14	protein-coding	-0.355082176020242	-0.0234780131550015	-0.348235712067191	-0.0771531129479376	-0.110651319008942	-0.344095374004179	-0.34749339729764	-0.0730394134872019	-0.212985640016048	0.928623894705838	1
Merged-chr7-143502668-2	chr7	143502568	143502768	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009434)	promoter-TSS (NM_009434)	-144.0	NM_009434	22113.0	Mm.334344	NM_009434	ENSMUSG00000010760	Phlda2	Ipl|Tssc3	pleckstrin homology like domain, family A, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-40298346-2	chr10	40298246	40298446	+	796.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009665, intron 1 of 7)	B1F2|SINE|Alu	3840.0	NM_007444	100041585.0	Mm.476925	NM_007444	ENSMUSG00000063953	Amd2	AdoMetDC|Amd1|Amd3	S-adenosylmethionine decarboxylase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80032019-2	chr10	80031919	80032119	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001142701)	TTS (NM_001142701)	7640.0	NM_025554	66420.0	Mm.18579	NM_025554	ENSMUSG00000004667	Polr2e	2410021N14Rik|25kDa|AW208866|RPB5|XAP4	polymerase (RNA) II (DNA directed) polypeptide E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-27379089-2	chr14	27378989	27379189	+	765.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027871, intron 3 of 10)	intron (NM_027871, intron 3 of 10)	17700.0	NM_001289688	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	1.24783557240089	0.218063775632739	0.206622104634858	0.197606221664783	0.381919403902897	0.220606632793397	1.52532731951371	0.199193581527757	0.669731513620874	0.731044032026729	0.998431161219273
Merged-chr14-120763724-2	chr14	120763624	120763824	+	616.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-147470.0	NM_023579	70572.0	Mm.221452	NM_023579	ENSMUSG00000030662	Ipo5	1110011C18Rik|5730478E03Rik|AA409333|C76941|IMB3|Kpnb3|Ranbp5|imp5	importin 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67137489-2	chr10	67137389	67137589	+	729.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_207221, intron 1 of 25)	intron (NM_207221, intron 1 of 25)	10231.0	NM_207221	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-31446589-4	chr3	31446479	31446679	+	895.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-136260.0	NM_172861	241919.0	Mm.285366	NM_172861	ENSMUSG00000069072	Slc7a14	A930013N06|BC061928	solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-58460636-2	chr16	58460536	58460736	+	546.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356484, intron 12 of 15)	RMER17A2|LTR|ERVK	52101.0	NM_028523	73379.0	Mm.373589	NM_028523	ENSMUSG00000035107	Dcbld2	1700055P21Rik|AW146002|CLCP1|Esdn	discoidin, CUB and LCCL domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-110159467-2	chr8	110159367	110159567	+	651.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007586, intron 1 of 10)	intron (NM_007586, intron 1 of 10)	8739.0	NM_007586	12308.0	Mm.2755	NM_007586	ENSMUSG00000003657	Calb2	CR	calbindin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-139429598-2	chr4	139429498	139429698	+	609.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001160319, exon 47 of 106)	exon (NM_001160319, exon 47 of 106)	48939.0	NM_001160319	69116.0	Mm.271956	NM_001160319	ENSMUSG00000066036	Ubr4	1810009A16Rik|A930005E13Rik|D930005K06Rik|Gm1032|Gm1666|N28143|RBAF600|Zubr1|mKIAA0462|p600	ubiquitin protein ligase E3 component n-recognin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-89707073-2	chr9	89706973	89707173	+	735.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2030.0	NM_025360	66111.0	Mm.27606	NM_025360	ENSMUSG00000032353	Tmed3	1200002G13Rik|AW546672|P24b	transmembrane p24 trafficking protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-75018202-2	chr14	75018102	75018302	+	677.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198642, intron 1 of 13)	intron (NM_198642, intron 1 of 13)	2175.0	NM_198642	271221.0	Mm.320280	NM_198642	ENSMUSG00000034959	Rubcnl	5031414D18Rik|Gm744|Gm911|Kiaa0226l	RUN and cysteine rich domain containing beclin 1 interacting protein like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-120133630-4	chr9	120133502	120133702	+	825.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3168.0	NR_002902	104433.0	Mm.453530	NR_002902	ENSMUSG00000064925	Snora62	E2|MBI-13|MBI-136|Rnu108	small nucleolar RNA, H/ACA box 62	snoRNA	0.198959692616481	-0.128846348386107	0.28224213188472	0.139849394038625	-0.14018842951597	-0.127943550500037	-0.131957453905818	0.144045273332788	-1.8679876078199	0.408211244898545	1
Merged-chr16-76766738-2	chr16	76766638	76766838	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_155453, intron 1 of 3)	intron (NR_155453, intron 1 of 3)	12354.0	NR_155453	102632814.0		NR_155453	ENSMUSG00000109333	Gm30790	Gm45028	predicted gene, 30790	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-117182709-4	chr4	117182623	117182823	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134471)	promoter-TSS (NM_134471)	-99.0	NM_134471	73804.0	Mm.247651	NM_134471	ENSMUSG00000028678	Kif2c	4930402F02Rik|ESTM5|Knsl6|MCAK|X83316	kinesin family member 2C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-4723800-2	chr9	4723700	4723900	+	616.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113181, intron 3 of 10)	L1_Mus2|LINE|L1	72434.0	NM_001113180	14802.0	Mm.209263	NM_019691	ENSMUSG00000025892	Gria4	GluA4|GluR-D|Glur-4|Glur4|Gluralpha4|spkw1	glutamate receptor, ionotropic, AMPA4 (alpha 4)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-33929341-4	chr8	33929243	33929443	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042675, intron 1 of 6)	intron (NM_001042675, intron 1 of 6)	520.0	NM_019733	19663.0	Mm.323997	NM_019733	ENSMUSG00000031586	Rbpms	2010300K22Rik|2700019M19Rik|AU017537|RBP-MS|hermes	RNA binding protein gene with multiple splicing	protein-coding	6.27557500898474	5.92858518530577	5.66545532425901	5.58138169037963	5.99658898814249	5.513500775813	5.56750634505739	5.58053755537319	-0.233836131398775	0.37822855256903	0.871397690824179
Merged-chr17-83680433-4	chr17	83680341	83680541	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	-25722.0	NM_001171054	116871.0	Mm.277668	NM_054082	ENSMUSG00000055817	Mta3	1110002J22Rik|mKIAA1266	metastasis associated 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-4259740-2	chr11	4259640	4259840	+	595.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008501, intron 1 of 3)	intron (NM_008501, intron 1 of 3)	2172.0	NM_008501	16878.0	Mm.4964	NM_008501	ENSMUSG00000034394	Lif	-	leukemia inhibitory factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96503263-3	chr3	96503169	96503369	+	907.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21916.0	NM_027126	69585.0	Mm.171314	NM_027126	ENSMUSG00000038403	Hfe2	2310035L15Rik|5230400G09Rik|AI414844|AI789733|DL-M|HJV|Rgmc|hemojuvelin	hemochromatosis type 2 (juvenile)	protein-coding	1.26837205518312	1.39978088314165	0.483538811767565	0.4755099229277	0.464015340614761	1.05603154431583	0.691796280889265	0.668300984300295	-1.18905196893258	0.474377508922088	0.926577946129404
Merged-chr3-27208200-2	chr3	27208100	27208300	+	618.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 1 of 4)	intron (NM_178772, intron 1 of 4)	25196.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-6560144-1	chr11	6560044	6560244	+	573.0	f0_balb.idr	promoter-TSS (NM_001190344)	promoter-TSS (NM_001190344)	-39.0	NM_001190344	216527.0	Mm.221271	NM_146014	ENSMUSG00000000378	Ccm2	BC029157	cerebral cavernous malformation 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-34259315-4	chr18	34259230	34259430	+	939.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360979, intron 1 of 15)	B3A|SINE|B2	11636.0	NM_001360979	11789.0	Mm.384171	NM_007462	ENSMUSG00000005871	Apc	AI047805|AU020952|AW124434|CC1|Min|mAPC	adenomatosis polyposis coli	protein-coding	0.517355410089494	0.11234345180217	0.104485705460481	1.21234916874991	0.0896195903901814	0.114103120727944	0.106226128332082	0.587509869824362	-2.01998297221665	0.334939164354193	1
Merged-chr11-75538119-3	chr11	75538060	75538260	+	787.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199284, intron 2 of 13)	intron (NM_001199284, intron 2 of 13)	6048.0	NM_001199283	215113.0	Mm.11186	NM_173388	ENSMUSG00000038178	Slc43a2	7630402D21Rik|BC042513|Lat4	solute carrier family 43, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81218244-4	chr10	81218161	81218361	+	796.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178662, intron 3 of 12)	ORR1B1|LTR|ERVL-MaLR	12518.0	NM_178662	16467.0	Mm.127681	NM_178662	ENSMUSG00000034958	Atcay	3322401A10Rik|BB077577|BNIP-H|CLAC|hes|ji	ataxia, cerebellar, Cayman type	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-66114320-4	chr5	66114200	66114400	+	941.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127382, intron 2 of 7)	intron (NM_001127382, intron 2 of 7)	-16121.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56670016-2	chr17	56669916	56670116	+	789.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3209.0	NM_001252466	71810.0	Mm.29608	NM_027933	ENSMUSG00000002372	Ranbp3	2610024N24Rik|AA408221	RAN binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28251773-3	chr17	28251686	28251886	+	970.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011145, intron 2 of 7)	intron (NM_011145, intron 2 of 7)	19032.0	NM_011145	19015.0	Mm.328914	NM_011145	ENSMUSG00000002250	Ppard	NUC-1|NUC1|Nr1c2|PPAR-beta|PPAR-delta|PPAR[b]|PPARdelta|Pparb|Pparb/d	peroxisome proliferator activator receptor delta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167709191-2	chr2	167709091	167709291	+	839.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18014.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69133387-2	chr11	69133287	69133487	+	891.400024	f1_balb.idr|f1_c57bl6.idr	intron (NM_011786, intron 7 of 14)	intron (NM_011786, intron 7 of 14)	7010.0	NM_011786	23801.0	Mm.41989	NM_011786	ENSMUSG00000020892	Aloxe3	e-LOX-3|eLOX-3	arachidonate lipoxygenase 3	protein-coding	2.1380355437526	0.930207888237697	0.908599795489642	1.94521814285702	2.15828222070623	0.934979471137813	0.913429488737359	1.95681548758083	0.0362027446668324	0.979511591233789	0.998431161219273
Merged-chr11-116010804-2	chr11	116010704	116010904	+	583.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016905, intron 2 of 7)	intron (NM_016905, intron 2 of 7)	1915.0	NM_016905	14635.0	Mm.2820	NM_016905	ENSMUSG00000020766	Galk1	AA409894|GALK|Gk|Glk|Glk1	galactokinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45724518-2	chr7	45724418	45724618	+	693.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_027055)	TTS (NM_027055)	1298.0	NM_027055	69363.0	Mm.45607	NM_027055	ENSMUSG00000070563	Spaca4	1700008E09Rik|AV043694|Samp14	sperm acrosome associated 4	protein-coding	0.368516996253953	-0.0219313921797731	0.45797689816366	-0.0283576287774315	0.377155064883604	-0.021103795034578	-0.0247758483900799	-0.0278735548395548	-1.12784246430798	0.627617092616298	1
Merged-chr8-39655648-2	chr8	39655552	39655752	+	671.625	f0_balb.idr|f0_c57.idr	Intergenic	Lx7|LINE|L1	-12974.0	NM_001113326	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-83167747-2	chr10	83167647	83167847	+	704.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021439, intron 2 of 2)	intron (NM_021439, intron 2 of 2)	170070.0	NM_177388	338365.0	Mm.67073	NM_177388	ENSMUSG00000034591	Slc41a2	A230035L05Rik|SLC41A1-L1	solute carrier family 41, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99032282-7	chr15	99032197	99032397	+	916.857117	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009448, intron 1 of 3)	intron (NM_009448, intron 1 of 3)	2406.0	NM_009448	22146.0	Mm.88212	NM_009448	ENSMUSG00000043091	Tuba1c	M[a]6|Tuba6	tubulin, alpha 1C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36814741-2	chr1	36814641	36814841	+	804.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_018872, intron 25 of 40)	intron (NM_018872, intron 25 of 40)	35757.0	NM_001289612	22637.0	Mm.8038	NM_009539	ENSMUSG00000026117	Zap70	Srk|ZAP-70|mrtle|mur	zeta-chain (TCR) associated protein kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-58622199-2	chr15	58622099	58622299	+	879.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	201228.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-118137037-4	chr14	118136937	118137137	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021434)	promoter-TSS (NM_021434)	-90.0	NM_021434	58245.0	Mm.275411	NM_021434	ENSMUSG00000022131	Gpr180	AB041545|E130016I23Rik|Itr	G protein-coupled receptor 180	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-78542679-2	chr16	78542579	78542779	+	784.333374	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001252440, exon 5 of 5)	3' UTR (NM_001252440, exon 5 of 5)	-17637.0	NR_040569	75818.0	Mm.410817	NR_040569		4930478L05Rik	-	RIKEN cDNA 4930478L05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-84737143-4	chr6	84737037	84737237	+	905.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177077, intron 20 of 21)	intron (NM_177077, intron 20 of 21)	-143229.0	NM_001177713	232174.0	Mm.255246	NM_175475	ENSMUSG00000063415	Cyp26b1	CP26|P450RAI-2	cytochrome P450, family 26, subfamily b, polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-7420361-3	chr17	7420263	7420463	+	942.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35058.0	NM_001142539	667055.0	Mm.327371	NM_001142539	ENSMUSG00000056133	Gm9992	-	predicted gene 9992	protein-coding	-1.50811478453619	-0.99851579554048	-1.48484165847197	-1.49312904261012	-1.50577282675516	-1.47256636097272	-1.48255773576353	-1.49164560481169	-2.24133836997777	0.518237887813808	1
Merged-chr11-76506984-3	chr11	76506882	76507082	+	855.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198018, intron 1 of 21)	intron (NM_198018, intron 1 of 21)	2437.0	NM_198018	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-45598031-4	chr17	45597948	45598148	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199115, intron 1 of 12)	intron (NM_001199115, intron 1 of 12)	1555.0	NM_001199115	63959.0	Mm.29744	NM_022880	ENSMUSG00000023942	Slc29a1	1200014D21Rik|AA407560|ENT1	solute carrier family 29 (nucleoside transporters), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106612181-2	chr11	106612081	106612281	+	783.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_198292, intron 1 of 11)	intron (NM_198292, intron 1 of 11)	749.0	NM_198292	21763.0	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-57246959-2	chr17	57246859	57247059	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030084, intron 1 of 16)	intron (NM_030084, intron 1 of 16)	511.0	NM_001308074	78308.0	Mm.28468	NM_030084	ENSMUSG00000005823	Gpr108	1810015L19Rik|AA589464|C79132|Lustr2	G protein-coupled receptor 108	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-3490565-4	chr5	3490463	3490663	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 5 of 7)	intron (NM_009873, intron 5 of 7)	-53270.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-31215236-3	chr6	31215143	31215343	+	804.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110469, intron 1 of 3)	intron (NR_110469, intron 1 of 3)	3231.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-63970588-7	chr5	63970514	63970714	+	998.880981	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-1717.0	NM_145923	100532.0	Mm.243632	NM_145923	ENSMUSG00000047881	Rell1	AA536743	RELT-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-53594540-1	chr5	53594440	53594640	+	913.1666869999999	f0_c57.idr	intron (NM_001359152, intron 1 of 9)	intron (NM_001359152, intron 1 of 9)	4054.0	NM_001080927	19664.0	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-99874837-3	chr12	99874740	99874940	+	893.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030172, intron 3 of 5)	intron (NM_030172, intron 3 of 5)	8602.0	NM_030172	78767.0	Mm.235920	NM_030172	ENSMUSG00000021176	Efcab11	2610021K21Rik|2610110A13Rik	EF-hand calcium binding domain 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167621484-2	chr2	167621384	167621584	+	818.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_023230, intron 1 of 3)	RSINE1|SINE|B4	10521.0	NM_001311146	66589.0	Mm.278783	NM_023230	ENSMUSG00000078923	Ube2v1	0610011J09Rik|AI256840|CROC-1|CROC1|D7Bwg1382e|UEV-1	ubiquitin-conjugating enzyme E2 variant 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-94936765-2	chr9	94936620	94936820	+	714.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177909, intron 7 of 15)	intron (NM_177909, intron 7 of 15)	184891.0	NR_106116	102465763.0		NR_106116	ENSMUSG00000098251	Mir7656	Gm27614|mmu-mir-7656	microRNA 7656	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-125802128-2	chr2	125802067	125802267	+	654.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19297.0	NM_177608	70354.0	Mm.138091	NM_133725	ENSMUSG00000035093	Secisbp2l	3110001I20Rik|AI504340|C630011I23	SECIS binding protein 2-like	protein-coding	0.135104521463838	0.381585513215451	-0.218347811041748	-0.221678782036214	0.143363777771941	-0.2130428526775	-0.217394301025634	-0.22109737129042	-1.46941207245474	0.545609073728683	1
Merged-chr13-95867544-2	chr13	95867491	95867691	+	644.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027711, intron 1 of 35)	intron (NM_027711, intron 1 of 35)	24331.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	-0.158512953448925	0.047595792677406	0.0266174046775632	0.556820130058809	-0.157602268727849	0.214312484578537	-0.14764054287294	-0.151743717725654	-1.87752104568923	0.406425996605802	1
Merged-chr10-125084698-2	chr10	125084598	125084798	+	554.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	224118.0	NM_001358915	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69060452-6	chr11	69060352	69060552	+	919.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_028005, exon 1 of 1)	exon (NM_028005, exon 1 of 1)	677.0	NM_028005	71923.0	Mm.340257	NM_028005	ENSMUSG00000045176	Borcs6	2310047M10Rik	BLOC-1 related complex subunit 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-75653875-3	chr7	75653790	75653990	+	637.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 8 of 36)	intron (NM_029332, intron 8 of 36)	-194448.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-99044956-4	chr14	99044870	99045070	+	807.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175245, intron 1 of 2)	PB1D10|SINE|Alu	1166.0	NM_175245	76789.0	Mm.38912	NM_175245	ENSMUSG00000033186	Mzt1	2410129H14Rik|AI120158|Mozart1	mitotic spindle organizing protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28904891-3	chr17	28904774	28904974	+	662.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045457)	promoter-TSS (NR_045457)	-391.0	NR_045457	74179.0	Mm.248931	NR_045457	ENSMUSG00000085333	1700030A11Rik	-	RIKEN cDNA 1700030A11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-120494839-4	chr2	120494739	120494939	+	883.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001177799, exon 10 of 21)	exon (NM_001177799, exon 10 of 21)	17930.0	NM_001109761	12335.0	Mm.458021	NM_007601	ENSMUSG00000079110	Capn3	AI323605|Capa-3|Capa3|Lp82|p94	calpain 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171638189-2	chr1	171638089	171638289	+	626.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144539, intron 5 of 7)	(TG)n|Simple_repeat|Simple_repeat	3711.0	NR_106151	102465784.0		NR_106151	ENSMUSG00000098316	Mir7683	Gm27950|mmu-mir-7683	microRNA 7683	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44997293-4	chr7	44997208	44997408	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016849)	promoter-TSS (NM_016849)	271.0	NM_029410	75736.0	Mm.261006	NM_029410	ENSMUSG00000003190	Bcl2l12	2810475P17Rik|5430429M05Rik|Bcl-L12|Bcl2-L12	BCL2-like 12 (proline rich)	protein-coding	5.89158251527744	5.57034440050362	4.95031282167229	5.77320472033352	4.8517651818641	5.18408077752157	5.61542150420355	5.8775911935036	-0.181776385977924	0.567490138672706	0.962562732139494
Merged-chr8-94181982-3	chr8	94181976	94182176	+	927.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	2987.0	NM_013602	17748.0	Mm.192991	NM_013602	ENSMUSG00000031765	Mt1	MT-I|Mt-1	metallothionein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-4230832-2	chr12	4230732	4230932	+	970.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361641, intron 2 of 5)	intron (NM_001361641, intron 2 of 5)	3133.0	NM_134046	52504.0	Mm.70546	NM_134046	ENSMUSG00000020652	Cenpo	2810429O05Rik|8430427C03Rik|D12Ertd482e	centromere protein O	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-28013541-3	chr3	28013403	28013603	+	920.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008875, intron 1 of 25)	intron (NM_008875, intron 1 of 25)	29332.0	NM_008875	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-32001853-1	chr12	32001753	32001953	+	554.0	f0_balb.idr	intron (NM_011158, intron 2 of 10)	intron (NM_011158, intron 2 of 10)	-51608.0	NM_001361928	73389.0	Mm.390461	NM_153198	ENSMUSG00000002996	Hbp1	1700058O05Rik|BE629963|C330012F01Rik|C86454	high mobility group box transcription factor 1	protein-coding	0.214223216254938	0.240298157639302	0.865568283185113	0.822263667446201	0.215878062207862	0.242189117147729	0.233724475341788	1.19946675683658	-0.0385647320678808	0.984819053855322	1
Merged-chr15-101983264-2	chr15	101983164	101983364	+	791.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21078.0	NM_031170	16691.0	Mm.358618	NM_031170	ENSMUSG00000049382	Krt8	AA960620|AL022697|AU019895|Card2|EndoA|K8|Krt-2.8|Krt2-8	keratin 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69662755-4	chr11	69662664	69662864	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001301710)	promoter-TSS (NM_001301710)	-115.0	NM_011900	24070.0	Mm.89579	NM_011900	ENSMUSG00000018761	Mpdu1	LEC35|SL15|Supl15h	mannose-P-dolichol utilization defect 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-130448717-2	chr5	130448617	130448817	+	880.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021371)	promoter-TSS (NM_021371)	-75.0	NM_021371	140904.0	Mm.40875	NM_021371	ENSMUSG00000060371	Caln1	9630012C17Rik|Cabp8|MNCb-0849	calneuron 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-66114498-4	chr9	66114400	66114600	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019727, intron 1 of 14)	intron (NM_019727, intron 1 of 14)	10386.0	NM_019727	56440.0	Mm.271891	NM_019727	ENSMUSG00000032382	Snx1	-	sorting nexin 1	protein-coding	3.74730285274499	4.28548287567171	4.49839950705754	5.01846768054652	4.73193107762601	4.383590402723	5.11157892290516	5.13230258611777	0.512858933925604	0.198859261669659	0.682339396047446
Merged-chr2-148687031-2	chr2	148686931	148687131	+	660.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355689, intron 3 of 5)	intron (NM_001355689, intron 3 of 5)	5911.0	NM_028986	74533.0	Mm.136913	NM_028986	ENSMUSG00000027439	Gzf1	8430437G08Rik|Zfp336|mGZF1	GDNF-inducible zinc finger protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-12869414-4	chr10	12869300	12869500	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-7665.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-41599241-4	chr7	41599155	41599355	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-34276.0	NM_001360675	67607.0	Mm.384626	NM_023363	ENSMUSG00000074165	Zfp788	2810426N06Rik|AI256342|AI605193	zinc finger protein 788	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-157094086-3	chr2	157093963	157094163	+	990.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177439, intron 4 of 5)	intron (NM_001177439, intron 4 of 5)	7008.0	NM_001177439	383766.0	Mm.480305	NM_001177439	ENSMUSG00000074628	Tldc2	Gm1332	TBC/LysM associated domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25617951-2	chr7	25617851	25618051	+	655.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1463.0	NM_001290487	66349.0	Mm.159956	NM_025504	ENSMUSG00000057229	Dmac2	2310004L02Rik|Atp5sl|C030044E10Rik	distal membrane arm assembly complex 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167976224-2	chr2	167976124	167976324	+	975.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011201, intron 8 of 8)	intron (NM_011201, intron 8 of 8)	34369.0	NM_001080708	69553.0	Mm.68454	NM_001080708	ENSMUSG00000074577	Ripor3	2310033K02Rik|Fam65c|Gm124	RIPOR family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-6241034-3	chr7	6240940	6241140	+	862.6166380000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11670.0	NM_001177416	627821.0	Mm.99441	NM_001177416	ENSMUSG00000053367	Epp13	EG627821|Eddm13|Gm6792	epididymal protein 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-89037213-1	chr11	89037113	89037313	+	588.0	f1_c57bl6.idr	TTS (NM_019505)	TTS (NM_019505)	23535.0	NM_019505	56077.0	Mm.153695	NM_019505	ENSMUSG00000000276	Dgke	C87606|DAGK6|DGK	diacylglycerol kinase, epsilon	protein-coding	-0.244908255306616	-0.585136939461972	-0.58824070182127	-0.590623067776751	-0.144132122832921	-0.399530314459808	-0.587557683782756	-0.590207648539009	0.874907676361999	0.747312808781772	1
Merged-chr10-71306376-3	chr10	71306278	71306478	+	858.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-4367.0	NR_152791	102637684.0	Mm.338906	NR_152791	ENSMUSG00000093732	Gm20609	-	predicted gene 20609	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-44756646-4	chr4	44756530	44756730	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138590)	promoter-TSS (NM_138590)	71.0	NM_138590	319885.0	Mm.331576	NM_138590	ENSMUSG00000035649	Zcchc7	4930572I07Rik|D4Wsu132e	zinc finger, CCHC domain containing 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-122821406-1	chr6	122821306	122821506	+	549.0	f1_balb.idr	intron (NM_021899, intron 1 of 10)	intron (NM_021899, intron 1 of 10)	1222.0	NM_021899	60611.0	Mm.87142	NM_021899	ENSMUSG00000003154	Foxj2	Fhx	forkhead box J2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-121109535-2	chr7	121109435	121109635	+	957.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_139310, intron 9 of 28)	(CAAAA)n|Simple_repeat|Simple_repeat	26097.0	NM_139310	246190.0	Mm.221073	NM_139310	ENSMUSG00000034990	Otoa	-	otoancorin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31129716-2	chr14	31129616	31129816	+	731.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001308464)	promoter-TSS (NM_001308464)	-786.0	NM_001308464	66487.0	Mm.379116	NM_001308091	ENSMUSG00000058351	Smim4	2010107H07Rik|Gm41122	small integral membrane protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-88696629-4	chr4	88696526	88696726	+	979.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5358.0	NM_008336	15974.0	Mm.377093	NM_008336	ENSMUSG00000100079	Ifnab	-	interferon alpha B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-114703493-1	chr5	114703393	114703593	+	621.0	f1_balb.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	-4286.0	NM_029992	77832.0	Mm.239698	NM_029992	ENSMUSG00000002486	Tchp	A930031F18Rik|AV279199	trichoplein, keratin filament binding	protein-coding	0.746186063378767	1.99734515956911	1.49687309471279	1.44696201175417	1.83114507374013	0.803407339114137	1.01945445811099	0.771562979449168	-0.993977469313369	0.486760964200079	0.932610354988537
Merged-chr9-107711212-2	chr9	107711112	107711312	+	796.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011349)	promoter-TSS (NM_011349)	-737.0	NM_011349	20350.0	Mm.12903	NM_011349	ENSMUSG00000034684	Sema3f	Sema4|Semak	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-67557926-2	chr3	67557824	67558024	+	788.083374	f0_balb.idr|f0_c57.idr	Intergenic	Lx8|LINE|L1	-24844.0	NM_025813	66868.0	Mm.491153	NM_025813	ENSMUSG00000027775	Mfsd1	1200003O06Rik	major facilitator superfamily domain containing 1	protein-coding	1.78253694578205	1.19127386640928	1.63696591179536	0.955726877634005	0.922009513169042	0.789342554471855	0.985642131951571	1.26222837067085	-1.85209646932512	0.168014375709781	0.634043765915062
Merged-chr16-64939644-2	chr16	64939544	64939744	+	577.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008310, intron 2 of 2)	intron (NM_008310, intron 2 of 2)	87643.0	NM_178647	106143.0	Mm.10160	NM_178647	ENSMUSG00000054604	Cggbp1	AA960172|AL023996|AW045841	CGG triplet repeat binding protein 1	protein-coding	-1.23826193677681	-1.21241040182355	-1.22270105026776	-0.934241458926562	-1.23783648736863	-1.21018037537722	-1.22037147302458	-0.929982742503718	0.0323590357436516	0.9924297640193	1
Merged-chr16-94724421-4	chr16	94724236	94724436	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	112917.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84988604-3	chr8	84988466	84988666	+	747.777771	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2029.0	NM_133255	170833.0	Mm.247775	NM_133255	ENSMUSG00000052566	Hook2	A630054I03Rik	hook microtubule tethering protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-57671811-2	chr17	57671711	57671911	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-97759.0	NM_001081653	620292.0	Mm.391030	NM_001081653	ENSMUSG00000038048	Cntnap5c	Caspr5-3|EG620292|Gm325	contactin associated protein-like 5C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-21239145-6	chr11	21239053	21239253	+	974.4722289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_139061, exon 1 of 23)	5' UTR (NM_139061, exon 1 of 23)	121.0	NM_001290628	245944.0	Mm.170103	NM_139061	ENSMUSG00000020128	Vps54	Hcc8|Vps54l|mSLP8|wr	VPS54 GARP complex subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-15799902-3	chr1	15799990	15800190	+	867.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5556.0	NM_009352	21749.0	Mm.4306	NM_009352	ENSMUSG00000025925	Terf1	Pin2|Trbf1|Trf1	telomeric repeat binding factor 1	protein-coding	-0.898443344149008	-0.883064818360745	-0.891077179145227	-0.893838745863429	-0.736208673427474	-0.0972352593783111	-0.890289402794229	-0.893355649448197	3.24588741766978	0.264981069630163	1
Merged-chr13-50417887-4	chr13	50417790	50417990	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175401)	promoter-TSS (NM_175401)	26.0	NR_154273	109082.0	Mm.18638	NM_175401	ENSMUSG00000037816	Fbxw17	1110064L07Rik|C85886	F-box and WD-40 domain protein 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-110682050-3	chr12	110681944	110682144	+	909.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025488, intron 1 of 5)	intron (NM_025488, intron 1 of 5)	575.0	NM_025488	66323.0	Mm.273316	NM_025488	ENSMUSG00000056508	1700001K19Rik	-	RIKEN cDNA 1700001K19 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46478390-3	chr19	46478275	46478475	+	766.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025391, intron 10 of 11)	intron (NM_001025391, intron 10 of 11)	-23273.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-173661789-2	chr2	173661689	173661889	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_024436, intron 2 of 6)	intron (NM_024436, intron 2 of 6)	1944.0	NM_024436	19334.0	Mm.275304	NM_024436	ENSMUSG00000027519	Rab22a	3732413A17Rik|AI662177|AW319644|AW550514|E130120E14Rik|Rab22	RAB22A, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-61116446-2	chr11	61116346	61116546	+	677.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24389.0	NM_021349	57916.0	Mm.265915	NM_021349	ENSMUSG00000010142	Tnfrsf13b	1200009E08Rik|Taci	tumor necrosis factor receptor superfamily, member 13b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-86500048-4	chr1	86499931	86500131	+	843.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26526.0	NR_153834	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-32555759-4	chr4	32555662	32555862	+	991.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109661, intron 2 of 4)	L1MA9|LINE|L1	15900.0	NR_026843	414068.0	Mm.389550	NR_026843	ENSMUSG00000086150	Bach2os	-	BTB and CNC homology 2, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5931075-2	chr19	5930975	5931175	+	899.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-6259.0	NM_026772	104252.0	Mm.491103	NM_026772	ENSMUSG00000045664	Cdc42ep2	1110008C05Rik|Borg1|Cep2|D19Bwg1013e	CDC42 effector protein (Rho GTPase binding) 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-125639782-1	chr7	125639682	125639882	+	636.0	f1_balb.idr	Intergenic	Intergenic	36353.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	1.67148295747123	0.422468653831872	0.399865868485872	0.381610373414745	0.35444359972498	0.995499108830012	2.56981150864433	0.384854403880431	1.6872332057497	0.607474424471356	0.974576632476413
Merged-chr7-27590219-2	chr7	27590119	27590319	+	952.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1333.0	NM_001110208	11652.0	Mm.177194	NM_007434	ENSMUSG00000004056	Akt2	2410016A19Rik|AW554154|PKB|PKBbeta	thymoma viral proto-oncogene 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27128000-1	chr17	27127900	27128100	+	656.0	f1_c57bl6.idr	intron (NM_026063, intron 1 of 3)	intron (NM_026063, intron 1 of 3)	5891.0	NM_026063	67267.0	Mm.272389	NM_026063	ENSMUSG00000024208	Uqcc2	2900010M23Rik|Cbp6|M19|Mnf1	ubiquinol-cytochrome c reductase complex assembly factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-91046412-4	chr1	91046277	91046477	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111312, intron 1 of 12)	intron (NM_001111312, intron 1 of 12)	-7067.0	NM_001111311	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-87230659-4	chr1	87230554	87230754	+	768.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023314, intron 6 of 6)	intron (NM_023314, intron 6 of 6)	16715.0	NM_001039169	26987.0	Mm.227183	NM_023314	ENSMUSG00000026254	Eif4e2	2700069E09Rik|AI036339|AV129531|D0H0S6743E|Eif4el3	eukaryotic translation initiation factor 4E member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135382534-3	chr4	135382436	135382636	+	910.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145555, intron 1 of 4)	intron (NM_145555, intron 1 of 4)	3136.0	NM_001168498	230822.0	Mm.35548	NM_145555	ENSMUSG00000043924	Ncmap	A330049M08Rik|AA545175|Mp11	noncompact myelin associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-55785432-2	chr12	55785332	55785532	+	564.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001003719, intron 6 of 39)	MER74A|LTR|ERVL	36084.0	NM_019994	56784.0	Mm.292180	NM_019994	ENSMUSG00000021027	Ralgapa1	2310003F20Rik|4930400K19Rik|AI563624|GRIPE|Garnl1|Tulip1|mKIAA0884	Ral GTPase activating protein, alpha subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-100225781-2	chr12	100225681	100225881	+	729.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25637.0	NM_001313934	12313.0	Mm.285993	NM_009790	ENSMUSG00000001175	Calm1	AI256814|AI327027|AI461935|AL024000|CaM|Calm|Cam1	calmodulin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-36962608-4	chr14	36962496	36962696	+	936.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027045, intron 1 of 10)	intron (NM_027045, intron 1 of 10)	6168.0	NM_027045	72972.0	Mm.27621	NM_027045	ENSMUSG00000058690	Ccser2	1700012P13Rik|2900054P12Rik|AI035535|AW108503|Fam190b|Gcap14	coiled-coil serine rich 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116095760-4	chr11	116095641	116095841	+	849.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8746.0	NM_001347642	22378.0	Mm.284792	NM_016852	ENSMUSG00000034341	Wbp2	-	WW domain binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-88630242-3	chr5	88630154	88630354	+	866.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359208, intron 8 of 13)	intron (NM_001359208, intron 8 of 13)	45326.0	NM_001098476	231413.0	Mm.332474	NM_178700	ENSMUSG00000044221	Grsf1	BB232551|C80280|D5Wsu31e	G-rich RNA sequence binding factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-122961099-2	chr4	122960999	122961199	+	810.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029662)	promoter-TSS (NM_029662)	89.0	NM_029662	76574.0	Mm.331842	NM_029662	ENSMUSG00000028655	Mfsd2a	1700018O18Rik|Mfsd2|NLS1	major facilitator superfamily domain containing 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-74696534-1	chr7	74696434	74696634	+	610.0	f1_c57bl6.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-141754.0	NM_001038643	108116.0	Mm.425467	NM_023908	ENSMUSG00000025790	Slco3a1	5830414C08Rik|Anr1|MJAM|OATP-D|R75096|Slc21a11	solute carrier organic anion transporter family, member 3a1	protein-coding	0.177871021645613	0.689280719256006	0.86056610437952	0.490570235290764	0.563013413254624	0.19838545985505	0.192105799935408	0.18674212689289	-2.02719522259102	0.312170521153916	1
Merged-chr8-70673255-4	chr8	70673166	70673366	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015816)	promoter-TSS (NM_015816)	35.0	NM_015816	50783.0	Mm.248188	NM_015816	ENSMUSG00000031848	Lsm4	-	LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	7.72472086659856	7.78716058107126	7.72764870151741	7.91692900401582	7.73578788653404	7.97599523630547	7.87009129633164	7.91128147310888	0.0848565020468988	0.516745264961756	0.947641799425091
Merged-chr11-116168255-4	chr11	116168154	116168354	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172571)	promoter-TSS (NM_172571)	-76.0	NM_172571	217335.0	Mm.35241	NM_172571	ENSMUSG00000020776	Fbf1	1110033G01Rik|5930413D20|mKIAA1863	Fas (TNFRSF6) binding factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-30963279-2	chr17	30963179	30963379	+	966.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_177465, intron 2 of 21)	intron (NM_177465, intron 2 of 21)	8596.0	NM_177465	52020.0	Mm.25923	NM_177465	ENSMUSG00000054134	Umodl1	D17Ertd488e	uromodulin-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-114596419-1	chr5	114596319	114596519	+	558.0	f0_balb.idr	intron (NM_001004180, intron 2 of 2)	intron (NM_001004180, intron 2 of 2)	28168.0	NM_001004180	433940.0	Mm.194212	NM_001004180	ENSMUSG00000041930	Fam222a	-	family with sequence similarity 222, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-85330566-2	chr9	85330466	85330666	+	697.1999509999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-3416.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-155694774-4	chr4	155694690	155694890	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_178699, exon 1 of 1)	exon (NM_178699, exon 1 of 1)	448.0	NM_178699	230991.0	Mm.29083	NM_178699	ENSMUSG00000074738	Fndc10	B930041F14Rik|MNCb-3966	fibronectin type III domain containing 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-122022527-2	chr3	122022427	122022627	+	633.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M5|LINE|L1	-21933.0	NM_007378	11304.0	Mm.3918	NM_007378	ENSMUSG00000028125	Abca4	AW050280|Abc10|Abcr|D430003I15Rik|RmP	ATP-binding cassette, sub-family A (ABC1), member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-160665239-2	chr2	160665139	160665339	+	629.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009408, intron 2 of 20)	(T)n|Simple_repeat|Simple_repeat	19342.0	NM_009408	21969.0	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-78541095-4	chr16	78540998	78541198	+	908.2708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001252440, exon 5 of 5)	3' UTR (NM_001252440, exon 5 of 5)	-19218.0	NR_040569	75818.0	Mm.410817	NR_040569		4930478L05Rik	-	RIKEN cDNA 4930478L05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-77288703-4	chr12	77288621	77288821	+	978.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252614, intron 3 of 12)	intron (NM_001252614, intron 3 of 12)	49982.0	NR_045554	53618.0	Mm.35628	NM_016893	ENSMUSG00000021065	Fut8	-	fucosyltransferase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35830257-2	chr17	35830157	35830357	+	808.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008027, intron 10 of 12)	B1_Mur1|SINE|Alu	6900.0	NM_008027	14251.0	Mm.2931	NM_008027	ENSMUSG00000059714	Flot1	reggie-2	flotillin 1	protein-coding	-0.289851946104314	-0.737899168765768	-0.740932179010924	-0.743264539078787	-0.280173431323445	-0.737213951634147	-0.740264187498491	-0.742857569821679	0.0418983010157508	0.98887086484455	1
Merged-chr11-120512809-2	chr11	120512709	120512909	+	568.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17918.0	NM_008101	14527.0	Mm.22329	NM_008101	ENSMUSG00000025127	Gcgr	GR	glucagon receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180835840-4	chr1	180835713	180835913	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20A3_MM|LTR|ERVK	-15338.0	NM_145943	208768.0	Mm.272625	NM_145943	ENSMUSG00000038806	Sde2	-	SDE2 telomere maintenance homolog (S. pombe)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-27142910-4	chr14	27142780	27142980	+	813.354126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1113.0	NM_001289686	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-29432836-3	chr17	29432748	29432948	+	827.4111330000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-58197.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	0.491082583093067	0.563505444094425	1.04712151826147	2.62367432887331	0.941415991216184	0.568446658399829	0.546026761215502	1.71597495444435	-1.38555795277569	0.571683263064649	0.963440742145752
Merged-chr11-120008192-2	chr11	120008092	120008292	+	730.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001198785, exon 14 of 14)	3' UTR (NM_001198785, exon 14 of 14)	-6575.0	NR_037225	100526518.0		NR_037225	ENSMUSG00000105524	Mir3065	mir-3065|mmu-mir-3065	microRNA 3065	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80141439-4	chr10	80141331	80141531	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025313)	promoter-TSS (NM_025313)	-844.0	NM_001347092	66043.0	Mm.278560	NM_025313	ENSMUSG00000003072	Atp5d	0610008F14Rik|1500000I11Rik|AA960090|AI876556|AU020773|Atp5f1d|C85518	ATP synthase, H+ transporting, mitochondrial F1 complex, delta subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89270537-4	chr3	89270437	89270637	+	983.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009057)	promoter-TSS (NM_009057)	33.0	NM_009057	19729.0	Mm.17958	NM_009057	ENSMUSG00000027953	Slc50a1	MmSWEET1|Rag1ap1|Rga	solute carrier family 50 (sugar transporter), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123066248-2	chr5	123066148	123066348	+	757.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10027.0	NM_001039723	330189.0	Mm.391872	NM_001039723	ENSMUSG00000054434	Tmem120b	-	transmembrane protein 120B	protein-coding	0.774623775986253	0.826238783538625	1.50952760965115	1.67859702438749	1.12947442216617	0.829892363067066	1.52333448867081	2.02342084101742	0.664997928651282	0.636392332700276	0.982417279970648
Merged-chr6-142751604-2	chr6	142751504	142751704	+	897.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR41A2|LTR|ERV1	-5082.0	NM_009908	12764.0	Mm.3820	NM_009908	ENSMUSG00000030282	Cmas	AW208911|CMPNeu5Ac|D6Bwg0250e	cytidine monophospho-N-acetylneuraminic acid synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-45235978-4	chr9	45235871	45236071	+	851.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198971, intron 1 of 4)	intron (NM_001198971, intron 1 of 4)	30736.0	NR_106054	102466803.0		NR_106054	ENSMUSG00000098361	Mir7086	Gm27643|mmu-mir-7086	microRNA 7086	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-87853240-4	chr1	87853211	87853411	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177646)	promoter-TSS (NM_177646)	24.0	NM_177646	227333.0	Mm.277217	NM_177646	ENSMUSG00000070738	Dgkd	AI841987|D330025K09|DGKdelta|dgkd-2	diacylglycerol kinase, delta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152888008-4	chr1	152887912	152888112	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160257, intron 1 of 23)	intron (NM_001160257, intron 1 of 23)	14633.0	NM_001359257	226517.0	Mm.270775	NM_001005507	ENSMUSG00000042772	Smg7	9430023P16Rik|mKIAA0250	Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-25064436-2	chr17	25064332	25064532	+	914.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001183, intron 2 of 2)	intron (NM_001001183, intron 2 of 2)	16682.0	NM_001001183	407831.0	Mm.34379	NM_001001183	ENSMUSG00000024168	Tmem204	-	transmembrane protein 204	protein-coding	-0.653122373755394	-0.642934863307054	-0.646281295438407	-0.648857345933536	-0.179443366957188	-0.642179371511268	-0.645543941694064	-0.117617978577273	3.30832811362023	0.244306257817071	1
Merged-chr2-155775783-4	chr2	155775677	155775877	+	898.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010808, intron 1 of 8)	CpG	435.0	NM_010808	17391.0	Mm.389325	NM_010808	ENSMUSG00000027612	Mmp24	AU040325|MMP-21|MT5-MMP|MT5MMP|MTMMP5	matrix metallopeptidase 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-102028959-1	chr5	102028859	102029059	+	1000.0	f1_c57bl6.idr	intron (NM_172882, intron 2 of 66)	ORR1E|LTR|ERVL-MaLR	40962.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	1.05459495484908	1.00624504853636	0.498207993635119	0.926118951986641	1.14894189644335	0.508073646143744	0.683937161433244	0.493067301539766	-0.754525451082789	0.651995636012731	1
Merged-chr7-67308296-4	chr7	67308190	67308390	+	933.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357324, intron 3 of 11)	intron (NM_001357324, intron 3 of 11)	64568.0	NM_001291192	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-42233834-2	chr19	42233734	42233934	+	828.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13744.0	NM_001141983	71146.0	Mm.329851	NM_027694	ENSMUSG00000042532	Golga7b	4933417O08Rik|AI839934	golgi autoantigen, golgin subfamily a, 7B	protein-coding	-0.0388841571249211	0.1764127538183	0.437749748434471	0.781854557740564	0.112650599116707	-0.0203867410769469	-0.026044189470901	-0.0308798279557486	-3.16375769325887	0.136724182130608	1
Merged-chr11-100356252-4	chr11	100356164	100356364	+	999.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177981)	promoter-TSS (NM_177981)	-123.0	NM_010404	15114.0	Mm.281700	NM_010404	ENSMUSG00000006930	Hap1	HAP-1	huntingtin-associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-6107971-4	chr18	6107859	6108059	+	960.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039692, intron 3 of 18)	intron (NM_001039692, intron 3 of 18)	28139.0	NM_029277	75415.0	Mm.239675	NM_029277	ENSMUSG00000041225	Arhgap12	2810011M08Rik	Rho GTPase activating protein 12	protein-coding	1.58926063012054	1.20577666917459	1.17457227465293	0.957869197525509	1.69448725403539	1.5538559337282	1.74500073550935	1.68790553611176	1.55750777848967	0.194827435759303	0.675199183778198
Merged-chr8-70782038-2	chr8	70781943	70782143	+	780.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_199308, exon 20 of 26)	exon (NM_199308, exon 20 of 26)	5181.0	NR_029440	72093.0	Mm.271208	NR_029440		2010320M18Rik	-	RIKEN cDNA 2010320M18 gene	ncRNA	-0.566314515355553	0.0500115604575598	-0.559033280803129	-0.56177462908584	-0.297974357109468	-0.359872046594875	-0.558248706559988	-0.561296077995668	-0.699873957806468	0.791719538709443	1
Merged-chr17-35117708-1	chr17	35117608	35117808	+	992.0	f1_c57bl6.idr	exon (NM_001303476, exon 6 of 7)	exon (NM_001303476, exon 6 of 7)	-2308.0	NM_148939	266614.0	Mm.104680	NM_148939	ENSMUSG00000043807	Ly6g5b	-	lymphocyte antigen 6 complex, locus G5B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-5437764-2	chr2	5437664	5437864	+	610.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_030601, intron 1 of 1)	intron (NR_030601, intron 1 of 1)	58374.0	NR_030601	100124465.0		NR_030601	ENSMUSG00000078031	Mir466d	Mirn466d	microRNA 466d	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-122468195-2	chr3	122468095	122468295	+	719.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_013867, intron 3 of 11)	B3A|SINE|B2	-15374.0	NM_001355264	29815.0	Mm.45815	NM_013867	ENSMUSG00000028121	Bcar3	AI131758|AND-34	breast cancer anti-estrogen resistance 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-73548733-4	chr2	73548580	73548780	+	994.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19193.0	NM_153138	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-50045012-3	chr18	50044931	50045131	+	775.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155293, intron 2 of 3)	MER119|DNA|hAT-Charlie	-8251.0	NM_134131	106869.0	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	2.35898313928966	2.52665482953872	2.78492390203162	2.70487829267626	2.75833543268877	1.50400505295636	3.58020207762383	2.08217070209377	0.250841772007827	0.766845805197229	0.998431161219273
Merged-chr9-108055253-3	chr9	108055135	108055335	+	679.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177275, exon 1 of 1)	3' UTR (NM_177275, exon 1 of 1)	2076.0	NM_177275	320844.0	Mm.449806	NM_177275	ENSMUSG00000032593	Amigo3	E430002N15Rik|ali3|mKIAA1851	adhesion molecule with Ig like domain 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-96732202-4	chr10	96732086	96732286	+	946.3916630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	115185.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-75196300-3	chr8	75196190	75196390	+	791.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17654.0	NM_029182	75141.0	Mm.179267	NM_029182	ENSMUSG00000034472	Rasd2	4930526B11Rik|AU045414|Rhes|TEM-2|TEM2	RASD family, member 2	protein-coding	0.00330008354778022	1.75093643913018	0.675105622953712	0.0209391983697214	0.00597688178170575	0.0469179854997939	0.0340625830762556	0.270178241915559	-3.91225768010045	0.0460370716948919	0.309730534315129
Merged-chr10-81070664-2	chr10	81070564	81070764	+	795.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_022653, intron 1 of 12)	B3A|SINE|B2	581.0	NM_022653	50492.0	Mm.26995	NM_022653	ENSMUSG00000004929	Thop1	AI131655|AI327041|EP24.15	thimet oligopeptidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80264846-4	chr10	80264750	80264950	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001122605)	promoter-TSS (NM_001122605)	-141.0	NM_001122604	70248.0	Mm.148693	NM_133188	ENSMUSG00000069565	Dazap1	2410042M16Rik|mPrrp	DAZ associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-103336696-4	chr9	103336578	103336778	+	928.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176979, intron 19 of 27)	Tigger1|DNA|TcMar-Tigger	28301.0	NM_001134427	321022.0	Mm.261025	NM_175565	ENSMUSG00000032803	Cdv3	2510010F10Rik|C230084J24Rik|C79446|TPP36	carnitine deficiency-associated gene expressed in ventricle 3	protein-coding	2.88802771272016	3.68897723186814	2.90716749092087	3.47376017985628	3.4602158308975	3.85543288759384	3.16084191582365	3.16164089304379	0.251302305308355	0.6644882809222	0.992184152638915
Merged-chr10-43034955-4	chr10	43034848	43035048	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175407, intron 5 of 6)	intron (NM_175407, intron 5 of 6)	-43786.0	NR_153349	327749.0	Mm.428887	NR_153349		Gm5079	C230040G06	predicted gene 5079	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-98959982-1	chr13	98959882	98960082	+	573.0	f0_c57.idr	Intergenic	Lx|LINE|L1	24583.0	NM_027064	69382.0	Mm.45466	NM_027064	ENSMUSG00000045022	1700024P04Rik	H2bl1|Subh2bv	RIKEN cDNA 1700024P04 gene	protein-coding	1.73253635341617	1.88487038118354	2.31511977447497	1.37351664130027	0.766303820331951	0.830875302857703	0.810642144838727	1.02734158588143	-4.51593354765058	0.00171547029868784	0.0299450232448934
Merged-chr7-128053305-2	chr7	128053205	128053405	+	859.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4c|LINE|L1	-9335.0	NM_001082960	16409.0	Mm.262106	NM_008401	ENSMUSG00000030786	Itgam	CD11b/CD18|CR3|CR3A|Cd11b|F730045J24Rik|Ly-40|MAC1|Mac-1|Mac-1a	integrin alpha M	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117785462-2	chr11	117785362	117785562	+	552.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001195090, intron 7 of 15)	PB1D9|SINE|Alu	2804.0	NM_001195088	217356.0	Mm.116675	NM_181856	ENSMUSG00000050106	Tmc8	EVIN2|Ever2|mFLJ00400	transmembrane channel-like gene family 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-30676329-3	chr11	30676243	30676443	+	784.0	f0_balb.idr|f0_c57.idr|f1_balb.idr	Intergenic	MamRep1527|LTR|LTR	-26947.0	NM_029344	75572.0	Mm.390319	NM_029344	ENSMUSG00000060923	Acyp2	2310004B09Rik	acylphosphatase 2, muscle type	protein-coding	2.96973442063004	2.0612431301746	3.55546539651073	1.22142897066154	1.98342525036826	2.07824410197801	1.26790044441889	3.08652449563925	-0.867231930587976	0.390740664941441	0.880033749858914
Merged-chr13-97559091-4	chr13	97558976	97559176	+	946.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_046157)	promoter-TSS (NR_046157)	-924.0	NR_046157	328314.0	Mm.138047	NR_046157	ENSMUSG00000110235	Gm5086	B230311A21|EG328314	predicted gene 5086	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-126932648-2	chr2	126932556	126932756	+	811.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_023220, intron 1 of 14)	intron (NM_023220, intron 1 of 14)	579.0	NM_023220	66552.0	Mm.269928	NM_023220	ENSMUSG00000027366	Sppl2a	2010106G01Rik|C130089K23Rik	signal peptide peptidase like 2A	protein-coding	2.29977639366818	2.31407272178078	1.9129392700428	2.30600780234053	2.41824325990551	2.98712386047754	2.10270106667765	2.87952221569425	0.947406528839021	0.23713713098664	0.733808141787246
Merged-chr16-18251185-2	chr16	18251085	18251285	+	872.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001080999, exon 5 of 12)	exon (NM_001080999, exon 5 of 12)	2302.0	NM_001081000	15547.0	Mm.271798	NM_008307	ENSMUSG00000022721	Trmt2a	Htf9c	TRM2 tRNA methyltransferase 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-29516439-2	chr6	29516339	29516539	+	638.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8487.0	NM_001029985	333088.0	Mm.332961	NM_001029985	ENSMUSG00000059022	Kcp	AW060220|CRIM-2|Crim2|Gm793|KCP-1	kielin/chordin-like protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105770774-2	chr8	105770674	105770874	+	689.25	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_145824, exon 14 of 14)	3' UTR (NM_145824, exon 14 of 14)	-12167.0	NM_027469	70575.0	Mm.40954	NM_027469	ENSMUSG00000013150	Gfod2	5730466C23Rik	glucose-fructose oxidoreductase domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53265540-3	chr4	53265439	53265639	+	845.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033140)	promoter-TSS (NR_033140)	-47.0	NR_033140	381524.0	Mm.23351	NM_001033454	ENSMUSG00000086712	AI427809	Gm1659	expressed sequence AI427809	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-26668470-1	chr14	26668370	26668570	+	847.6666869999999	f0_balb.idr	exon (NM_178668, exon 1 of 3)	exon (NM_178668, exon 1 of 3)	1138.0	NR_106132	102465773.0		NR_106132	ENSMUSG00000098751	Mir7672	Gm27314|mmu-mir-7672	microRNA 7672	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-37705033-4	chr3	37704914	37705114	+	910.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	19346.0	NM_198657	381438.0	Mm.490549	NM_198657	ENSMUSG00000058174	Gm5148	EG381438	predicted gene 5148	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-48051927-5	chr4	48051929	48052129	+	716.299988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001307989, exon 1 of 3)	exon (NM_001307989, exon 1 of 3)	783.0	NM_001307989	18124.0	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-39545021-4	chr7	39544955	39545155	+	932.508301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27289.0	NM_001004139	70227.0	Mm.333800	NM_001004139	ENSMUSG00000068959	Zfp619	3000002G13Rik	zinc finger protein 619	protein-coding	4.05927770416359	3.91286408401437	3.08238160198954	4.16979188377275	3.15060876848047	3.79515301181647	3.32554683264965	2.59906681571398	-0.892030113990909	0.112545159369337	0.525379553325447
Merged-chr4-128728610-4	chr4	128728500	128728700	+	954.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195083, intron 1 of 6)	intron (NM_001195083, intron 1 of 6)	1029.0	NM_001195083	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-139393804-1	chr7	139393704	139393904	+	548.0	f1_c57bl6.idr	intron (NM_183144, intron 1 of 15)	B3|SINE|B2	4695.0	NM_001127363	212111.0	Mm.28308	NM_183144	ENSMUSG00000025477	Inpp5a	-	inositol polyphosphate-5-phosphatase A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-59656411-4	chr9	59656298	59656498	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011099)	promoter-TSS (NM_011099)	30.0	NM_011099	18746.0	Mm.326167	NM_011099	ENSMUSG00000032294	Pkm	AA414905|AL024370|AL024424|Pk-2|Pk-3|Pk3|Pkm2	pyruvate kinase, muscle	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-7057860-4	chr19	7057746	7057946	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134147, intron 1 of 10)	intron (NM_134147, intron 1 of 10)	1078.0	NM_134147	107227.0	Mm.439977	NM_134147	ENSMUSG00000036278	Macrod1	AI604841|AW743046|D930010J01Rik|Lrp16	MACRO domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-129531820-3	chr7	129531712	129531912	+	702.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-60051.0	NM_172255	207425.0	Mm.229323	NM_172255	ENSMUSG00000042055	Wdr11	2900055P10Rik|AW489876|Brwd2|mKIAA1351	WD repeat domain 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-37013181-4	chr1	37013056	37013256	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73629.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-5474433-2	chr11	5474333	5474533	+	795.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29586.0	NM_001080924	407821.0	Mm.216313	NM_001080924	ENSMUSG00000041961	Znrf3	Gm1167	zinc and ring finger 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-4137499-2	chr11	4137399	4137599	+	770.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027859, intron 5 of 8)	intron (NM_027859, intron 5 of 8)	-1865.0	NR_037220	100526466.0		NR_037220	ENSMUSG00000093080	Mir3060	mir-3060|mmu-mir-3060	microRNA 3060	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-16196839-4	chr4	16196739	16196939	+	920.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045765, intron 2 of 6)	intron (NR_045765, intron 2 of 6)	32729.0	NR_045765	100415915.0	Mm.387180	NR_045765	ENSMUSG00000085112	A530072M11Rik	-	RIKEN cDNA gene A530072M11	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-43614661-2	chr19	43614561	43614761	+	743.333374	f1_balb.idr|f1_c57bl6.idr	exon (NM_008699, exon 2 of 2)	exon (NM_008699, exon 2 of 2)	2336.0	NM_008699	18089.0	Mm.56994	NM_008699	ENSMUSG00000044220	Nkx2-3	Nkx-2.3|Nkx2.3|tinman	NK2 homeobox 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-142406785-2	chr7	142406685	142406885	+	634.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-18915.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-145185371-4	chr5	145185337	145185537	+	693.020813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020582, intron 2 of 3)	RLTR11B|LTR|ERVK	6155.0	NM_020582	57423.0	Mm.133551	NM_020582	ENSMUSG00000038690	Atp5j2	1110019H14Rik	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-62911074-2	chr14	62910974	62911174	+	760.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175546, intron 3 of 11)	intron (NM_175546, intron 3 of 11)	45532.0	NR_105860	102465311.0		NR_105860	ENSMUSG00000098858	Mir6541	Gm27311|mmu-mir-6541	microRNA 6541	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-35027196-4	chr7	35027109	35027309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008820, intron 11 of 14)	intron (NM_008820, intron 11 of 14)	29357.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-109413288-4	chr11	109413175	109413375	+	790.866699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE-int|LTR|ERVL-MaLR	-12671.0	NM_025275	13929.0	Mm.211850	NM_025275	ENSMUSG00000020610	Amz2	AA408420|ESTM12|X83328	archaelysin family metallopeptidase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-121374606-4	chr9	121374505	121374705	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357973, intron 1 of 5)	intron (NM_001357973, intron 1 of 5)	7647.0	NM_175114	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-136124748-4	chr4	136124669	136124869	+	907.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20A4|LTR|ERVK	-19053.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	1.81207938925317	0.68547626023989	0.67075268632443	1.53664170576154	0.642362614726992	1.56847498515943	0.674029743454731	1.19798443264459	-0.720731712605037	0.649067529060758	0.985345282202147
Merged-chr6-91686725-2	chr6	91686625	91686825	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009320, intron 1 of 14)	intron (NM_009320, intron 1 of 14)	2658.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-108995130-4	chr8	108995035	108995235	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58275.0	NR_037295	100526511.0		NR_037295	ENSMUSG00000093241	Mir3108	mir-3108|mmu-mir-3108	microRNA 3108	ncRNA	1.49486786150693	1.08199034464357	1.97317244688968	1.8125129819964	1.73214402118635	1.08616114742259	1.9895584779443	1.82217391163943	0.202274759228422	0.862757185255271	0.998431161219273
Merged-chr15-62127992-4	chr15	62127901	62128101	+	868.520874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132746, intron 2 of 6)	intron (NR_132746, intron 2 of 6)	88744.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19764134-4	chr7	19764076	19764276	+	906.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_020486, exon 8 of 15)	exon (NM_020486, exon 8 of 15)	6356.0	NM_020486	57278.0	Mm.29236	NM_020486	ENSMUSG00000002980	Bcam	1200005K12Rik|B-CAM|Gplu|Lu	basal cell adhesion molecule	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-125099755-3	chr4	125099629	125099829	+	868.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151472, intron 4 of 7)	intron (NR_151472, intron 4 of 7)	14595.0	NR_151472	70088.0	Mm.291214	NM_027310	ENSMUSG00000028863	Meaf6	2310005N01Rik|2810036M01Rik	MYST/Esa1-associated factor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88244305-3	chr3	88244206	88244406	+	882.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021375, intron 8 of 9)	intron (NM_021375, intron 8 of 9)	10378.0	NM_021375	58176.0	Mm.103777	NM_021375	ENSMUSG00000104445	Rhbg	-	Rhesus blood group-associated B glycoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-107788827-3	chr13	107788739	107788939	+	892.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 2 of 14)	intron (NM_145456, intron 2 of 14)	101225.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	1.32850199329412	0.714625936950494	1.08011398849212	0.885811200455044	1.43345323027987	1.75083517456927	0.915329646299152	0.693751225109094	1.00599106977135	0.482158177691833	0.930046188356806
Merged-chr16-87455122-5	chr16	87455064	87455264	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024258, intron 1 of 17)	CpG	179.0	NM_024258	74112.0	Mm.152941	NM_024258	ENSMUSG00000025616	Usp16	1200004E02Rik|2810483I07Rik|6330514E22Rik|UBPM	ubiquitin specific peptidase 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85475137-4	chr12	85475050	85475250	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010234, exon 2 of 4)	exon (NM_010234, exon 2 of 4)	1260.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-27165113-2	chr7	27165013	27165213	+	852.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_053208, exon 2 of 6)	exon (NM_053208, exon 2 of 6)	615.0	NM_001357767	112406.0	Mm.29978	NM_053208	ENSMUSG00000058709	Egln2	0610011A13Rik|C85656|Hif-p4h-1|Ier4|Phd1|SM-20	egl-9 family hypoxia-inducible factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80107270-3	chr10	80107185	80107385	+	912.492065	f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 1 of 4)	B1_Mm|SINE|Alu	-4583.0	NM_001359637	216161.0	Mm.262102	NM_183426	ENSMUSG00000035673	Sbno2	BC019206|F730040C21|Sno|Stno	strawberry notch 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-92037140-3	chr2	92037033	92037233	+	858.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12963.0	NM_011957	26427.0	Mm.10353	NM_011957	ENSMUSG00000027230	Creb3l1	Oasis	cAMP responsive element binding protein 3-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-6649090-2	chr15	6648990	6649190	+	736.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011815, intron 13 of 17)	intron (NM_011815, intron 13 of 17)	5213.0	NR_155272	102632231.0	Mm.444780	NR_155272		LOC102632231	-	uncharacterized LOC102632231	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55545740-4	chr19	55545642	55545842	+	875.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360431, intron 8 of 8)	intron (NM_001360431, intron 8 of 8)	156462.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-25010421-2	chr8	25010321	25010521	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001270996, intron 1 of 21)	intron (NM_001270996, intron 1 of 21)	6501.0	NM_001270996	11502.0	Mm.28908	NM_007404	ENSMUSG00000031555	Adam9	AU020942|MDC9|Mltng|mKIAA0021	a disintegrin and metallopeptidase domain 9 (meltrin gamma)	protein-coding	-0.893986561169655	-0.875744574464236	0.191235023404903	-0.88803707909448	-0.893095256885496	-0.872421296127899	-0.88349549973802	-0.887416687878218	-3.49744126941707	0.244297073838425	1
Merged-chr4-28949299-3	chr4	28949199	28949399	+	675.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010141, intron 11 of 16)	intron (NM_010141, intron 11 of 16)	-118780.0	NR_151693	102634169.0		NR_151693		Gm11917	-	predicted gene 11917	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30729538-4	chr7	30729453	30729653	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027215)	promoter-TSS (NM_027215)	-19.0	NM_027215	69804.0	Mm.27499	NM_027215	ENSMUSG00000006315	Tmem147	2010004E11Rik|5033425B17Rik|Nifie14	transmembrane protein 147	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-41525680-4	chr5	41525585	41525785	+	959.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	182006.0	NM_001310592	100972.0	Mm.41555	NM_027295	ENSMUSG00000029128	Rab28	2700023P08Rik|AW496496	RAB28, member RAS oncogene family	protein-coding	4.05948675587368	4.02201968920272	3.82641710193455	4.42119917298599	3.26602213553412	2.63759453636971	2.87218938437216	3.86825986105889	-1.22995923728284	0.0205887893909964	0.182661422105075
Merged-chr3-94838261-4	chr3	94838163	94838363	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001165948, intron 1 of 18)	CpG	696.0	NM_172683	229584.0	Mm.274787	NM_172683	ENSMUSG00000038902	Pogz	9530006B08Rik	pogo transposable element with ZNF domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-33782011-5	chr17	33781870	33782070	+	889.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020581)	promoter-TSS (NM_020581)	-395.0	NM_020581	57875.0	Mm.196189	NM_020581	ENSMUSG00000002289	Angptl4	Arp4|Bk89|Fiaf|Hfarp|Ng27|Pgar|Pgarg|Pp1158	angiopoietin-like 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117819891-2	chr10	117819791	117819991	+	897.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_024457, intron 5 of 7)	intron (NM_024457, intron 5 of 7)	26083.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-43743791-3	chr9	43743711	43743911	+	897.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021424)	promoter-TSS (NM_021424)	-765.0	NM_021424	58235.0	Mm.335096	NM_021424	ENSMUSG00000032012	Nectin1	AI835281|AW549174|Cd111|HIgR|HveC|PRR|PRR1|Pvrl1|nectin-1	nectin cell adhesion molecule 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-32378348-4	chr18	32378257	32378457	+	863.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045403)	promoter-TSS (NR_045403)	-73.0	NR_045403	402767.0	Mm.385109	NR_045403	ENSMUSG00000097413	A830052D11Rik	-	RIKEN cDNA A830052D11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4081736-2	chr19	4081636	4081836	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001160253)	promoter-TSS (NM_001160253)	-752.0	NM_001160253	29866.0	Mm.46268	NM_013878	ENSMUSG00000024857	Cabp2	-	calcium binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-102163228-2	chr2	102163099	102163299	+	842.75	f0_balb.idr|f1_c57bl6.idr	intron (NM_178886, intron 1 of 5)	(CA)n|Simple_repeat|Simple_repeat	23261.0	NM_178886	241576.0	Mm.489740	NM_178886	ENSMUSG00000048058	Ldlrad3	6430500P08|AI194318|Lrad3	low density lipoprotein receptor class A domain containing 3	protein-coding	2.35199369751933	2.91818598775864	2.57026244568002	2.72996550687756	1.06387807919617	1.91345245321334	1.14360398023037	1.11197819736714	-3.7171625869472	0.00111659853374256	0.0212318238530754
Merged-chr1-178318667-5	chr1	178318557	178318757	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025511)	promoter-TSS (NM_025511)	-496.0	NM_025511	66359.0	Mm.489720	NM_025511	ENSMUSG00000026500	Cox20	2310005N03Rik|Fam36a	COX20 Cox2 chaperone	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-164860984-4	chr2	164860871	164861071	+	975.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3263.0	NM_011125	18830.0	Mm.6105	NM_011125	ENSMUSG00000017754	Pltp	Bpife|OD107	phospholipid transfer protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-143053551-4	chr7	143053484	143053684	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_110354, exon 1 of 5)	non-coding (NR_110354, exon 1 of 5)	102.0	NR_110355	97423.0	Mm.5250	NM_133790	ENSMUSG00000059277	R74862	-	expressed sequence R74862	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-125116715-4	chr4	125116601	125116801	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11180.0	NM_153159	230738.0	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126861883-4	chr7	126861792	126861992	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172746)	promoter-TSS (NM_172746)	-80.0	NM_172746	233876.0	Mm.363427	NM_172746	ENSMUSG00000042606	Hirip3	B130036O03|C86302	HIRA interacting protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-155108026-3	chr1	155107943	155108143	+	607.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8407.0	NM_010500	15939.0	Mm.12246	NM_010500	ENSMUSG00000056708	Ier5	-	immediate early response 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-135716588-4	chr7	135716488	135716688	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081117)	promoter-TSS (NM_001081117)	-209.0	NM_001081117	17345.0	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71658593-2	chr8	71658493	71658693	+	985.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001029873, exon 10 of 42)	exon (NM_001029873, exon 10 of 42)	13164.0	NM_001029873	382018.0	Mm.334606	NM_001029873	ENSMUSG00000034799	Unc13a	2410078G03Rik|Munc13-1	unc-13 homolog A (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55414251-2	chr19	55414151	55414351	+	785.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360431, intron 6 of 8)	intron (NM_001360431, intron 6 of 8)	98194.0	NM_001293686	53611.0	Mm.258637	NM_016862	ENSMUSG00000024983	Vti1a	1110014F16Rik|1110018K19Rik|4921537J05Rik|MVti1|MVti1a|Vti1|Vti1-rp2	vesicle transport through interaction with t-SNAREs 1A	protein-coding	0.618416582651405	1.42649668846549	0.46483520924575	1.55291917570284	0.442644917985681	0.714819195555535	0.467412003723358	0.829763810205381	-2.40319193417511	0.149444831429622	0.601018688545005
Merged-chr15-6626937-2	chr15	6626837	6627037	+	629.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_155272, intron 2 of 6)	intron (NR_155272, intron 2 of 6)	27366.0	NR_155272	102632231.0	Mm.444780	NR_155272		LOC102632231	-	uncharacterized LOC102632231	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-185200052-1	chr1	185199952	185200152	+	703.0	f1_c57bl6.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	-4116.0	NM_001163754	98732.0	Mm.275841	NM_172649	ENSMUSG00000039318	Rab3gap2	1110059F07Rik|2010002H18Rik|5830469C09|AI851069|AW743433|RAB3-GAP150|mKIAA0839	RAB3 GTPase activating protein subunit 2	protein-coding	1.61027961985808	1.84338746741151	2.17054357391211	2.25031146577369	0.834584633037318	0.903833107446991	0.882169633721954	1.09915973592726	-4.60170803854769	0.00103230014458377	0.0199852164641729
Merged-chr8-95888469-4	chr8	95888365	95888565	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010325)	promoter-TSS (NM_010325)	-100.0	NM_010325	14719.0	Mm.230169	NM_010325	ENSMUSG00000031672	Got2	AL022787|FABP-pm|Got-2|Kyat4|mAspAT	glutamatic-oxaloacetic transaminase 2, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-89581753-2	chr1	89581653	89581853	+	652.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037136, intron 1 of 16)	CpG	102139.0	NR_015540	74403.0	Mm.444291	NR_015540		4933400F21Rik	1700091C04Rik|4930565K10Rik	RIKEN cDNA 4933400F21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-108094568-4	chr9	108094475	108094675	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146226)	promoter-TSS (NM_146226)	-95.0	NM_146226	235606.0	Mm.219639	NM_146226	ENSMUSG00000032590	Apeh	-	acylpeptide hydrolase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-35022355-4	chr16	35022270	35022470	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023587)	promoter-TSS (NM_023587)	-51.0	NM_023587	70757.0	Mm.27286	NM_023587	ENSMUSG00000035376	Hacd2	6330408J20Rik|AI255777|AI481689|Hcad2|Ptplb	3-hydroxyacyl-CoA dehydratase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-126023756-4	chr4	126023747	126023947	+	980.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045561)	promoter-TSS (NR_045561)	-812.0	NR_045561	12986.0	Mm.271701	NM_007782	ENSMUSG00000028859	Csf3r	Cd114|Csfgr|G-CSF-R|G-CSFR	colony stimulating factor 3 receptor (granulocyte)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-7220145-2	chr9	7220045	7220245	+	673.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35640.0	NM_029775	76863.0	Mm.27293	NM_029775	ENSMUSG00000032002	Dcun1d5	3110001A18Rik|4833420K19Rik|AW060460|D430047L21Rik	DCN1, defective in cullin neddylation 1, domain containing 5 (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-7398061-4	chr1	7397957	7398157	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	309137.0	NM_183028	319263.0	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-21366745-2	chr5	21366645	21366845	+	695.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_029195, intron 2 of 18)	intron (NM_029195, intron 2 of 18)	-5928.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-48407733-3	chr9	48407653	48407853	+	802.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	45712.0	NM_172921	244853.0	Mm.325522	NM_172921	ENSMUSG00000044229	Nxpe4	C130036J11|D930028F11Rik|Fam55d	neurexophilin and PC-esterase domain family, member 4	protein-coding	1.32308479186101	2.43269270241106	2.57433869561096	1.85682767362348	0.911136861595823	2.14106112467418	0.972099844962385	0.947742714617306	-2.10053503348194	0.0897075670847169	0.462598018574112
Merged-chr2-43556064-2	chr2	43555964	43556164	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289593, intron 1 of 12)	intron (NM_001289593, intron 1 of 12)	739.0	NM_027552	70789.0	Mm.105278	NM_027552	ENSMUSG00000026866	Kynu	4432411A05Rik	kynureninase (L-kynurenine hydrolase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-57880188-2	chr18	57880091	57880291	+	731.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_009194, intron 1 of 26)	B1_Mur2|SINE|Alu	1513.0	NM_009194	20496.0	Mm.399997	NM_009194	ENSMUSG00000024597	Slc12a2	9330166H04Rik|Nkcc1|mBSC2|sy-ns	solute carrier family 12, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-65834046-4	chr14	65833941	65834141	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028039)	promoter-TSS (NM_028039)	-72.0	NM_028039	71988.0	Mm.249280	NM_028039	ENSMUSG00000022034	Esco2	2410004I17Rik|D030072L07Rik	establishment of sister chromatid cohesion N-acetyltransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-75019567-4	chr18	75019462	75019662	+	899.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027727, intron 1 of 16)	intron (NM_027727, intron 1 of 16)	790.0	NM_027727	69190.0	Mm.173826	NM_027727	ENSMUSG00000035765	Dym	1810041M12Rik|4933427L07Rik|C030019K18Rik	dymeclin	protein-coding	2.01570847738086	1.63081739668024	1.02024199963544	1.65968348764162	1.46675083362745	1.78587009630171	1.95101103019959	1.00825196376754	-0.100037373755309	0.934087395951556	0.998431161219273
Merged-chr12-35533305-4	chr12	35533045	35533245	+	777.4375	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001314027, intron 1 of 9)	intron (NM_001314027, intron 1 of 9)	1844.0	NM_013464	11622.0	Mm.341377	NM_013464	ENSMUSG00000019256	Ahr	Ah|Ahh|Ahre|In|bHLHe76	aryl-hydrocarbon receptor	protein-coding	2.09744913034048	3.26652758248854	1.58045565794891	2.72285184353673	2.33621487782939	2.5169630480014	2.16236234660639	1.28671609791691	-0.894373069084547	0.342543418394278	0.843489544525844
Merged-chr6-3388929-2	chr6	3388829	3389029	+	663.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010156, intron 1 of 1)	MTD|LTR|ERVL-MaLR	10642.0	NM_010156	209086.0	Mm.196013	NM_010156	ENSMUSG00000047735	Samd9l	AA175286|ESTM25|mKIAA2005	sterile alpha motif domain containing 9-like	protein-coding	1.02379663779973	0.571940027982399	1.06664966233117	0.351497819814978	0.342566154194053	1.02597073543803	0.359574790229337	0.35259791167947	-1.26258377057047	0.497177543753447	1
Merged-chr17-48262016-4	chr17	48261888	48262088	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2307.0	NM_172623	224840.0	Mm.131234	NM_172623	ENSMUSG00000051682	Treml4	5031403H21Rik|BB137214|IDCP1|TLT-4|TLT4|Treml3	triggering receptor expressed on myeloid cells-like 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127089701-2	chr10	127089601	127089801	+	683.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301014, intron 13 of 17)	intron (NM_001301014, intron 13 of 17)	10794.0	NM_001033263	216439.0	Mm.336761	NM_001033263	ENSMUSG00000025422	Agap2	AGAP-2|Centg1|PIKE|cnt-g1|mKIAA0167	ArfGAP with GTPase domain, ankyrin repeat and PH domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-11758351-4	chr8	11758233	11758433	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113518)	promoter-TSS (NM_001113518)	3.0	NM_001113518	54126.0	Mm.244068	NM_017402	ENSMUSG00000031511	Arhgef7	Cool|PIX|Pak3bp|betaPix|betaPix-b|betaPix-c|cool-1|mKIAA0142|p85Cool1|p85SPR	Rho guanine nucleotide exchange factor (GEF7)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-108702018-3	chr6	108701914	108702114	+	760.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-41080.0	NR_104577	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	1.53542767085809	0.844049704909668	2.30119637240039	0.809532100481	1.16352473079253	0.84830488598266	1.43570296202346	1.8511911899355	-0.499454425970463	0.71588352758709	0.998431161219273
Merged-chr18-60381917-4	chr18	60381817	60382017	+	847.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021792, intron 2 of 2)	intron (NM_021792, intron 2 of 2)	5888.0	NM_001146275	60440.0	Mm.261140	NM_021792	ENSMUSG00000054072	Iigp1	2900074L10Rik|AI046432|AW111922|Ifgga1|Iigp|Irga6	interferon inducible GTPase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-29245886-4	chr17	29245766	29245966	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8076.0	NM_001360239	240058.0	Mm.39905	NM_153166	ENSMUSG00000024008	Cpne5	A830083G22Rik	copine V	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-96145328-4	chr16	96145215	96145415	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207301)	promoter-TSS (NM_207301)	-104.0	NM_207301	71446.0	Mm.255063	NM_207301	ENSMUSG00000023147	Wrb	5530402J05Rik|C030018G21Rik|Chd5	tryptophan rich basic protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80706597-2	chr10	80706497	80706697	+	719.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_007460)	TTS (NM_007460)	3904.0	NM_027829	71564.0	Mm.35802	NM_027829	ENSMUSG00000055862	Izumo4	9030607L17Rik|AI550407	IZUMO family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-122418522-4	chr2	122418423	122418623	+	998.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22297.0	NM_172980	269346.0	Mm.29510	NM_172980	ENSMUSG00000027219	Slc28a2	2010208B10Rik|B430217P18|BB152493|Cnt2|SPNT	solute carrier family 28 (sodium-coupled nucleoside transporter), member 2	protein-coding	3.71976506024498	4.26245599967487	3.62704218625965	4.00098228735129	5.21859182640294	5.55068427869803	5.42480292838938	4.32598259957788	1.5971545788191	7.26507502915127e-05	0.00239907440916762
Merged-chr4-41499706-2	chr4	41499606	41499806	+	696.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085515, intron 1 of 1)	intron (NM_001085515, intron 1 of 1)	3369.0	NM_001085515	329828.0	Mm.27054	NM_001085515	ENSMUSG00000046312	AI464131	AA408153|AI604836|Gm762|Kiaa1161|Myorg|NET37	expressed sequence AI464131	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-77515942-1	chr1	77515842	77516042	+	689.0	f0_balb.idr	promoter-TSS (NM_007936)	promoter-TSS (NM_007936)	-854.0	NM_007936	13838.0	Mm.400747	NM_007936	ENSMUSG00000026235	Epha4	2900005C20Rik|AI385584|Cek8|Hek8|Sek|Sek1|Tyro1|rb	Eph receptor A4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-76174519-4	chr14	76174396	76174596	+	987.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	63605.0	NM_013745	27275.0	Mm.21138	NM_013745	ENSMUSG00000022009	Nufip1	Nufip	nuclear fragile X mental retardation protein interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114916405-2	chr11	114916305	114916505	+	707.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17981.0	NM_001347651	217304.0	Mm.185355	NM_199221	ENSMUSG00000063193	Cd300lb	CLM-7|Clm7|Gm253|LMIR5	CD300 molecule like family member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-40251909-2	chr9	40251809	40252009	+	788.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17307.0	NM_001083917	235281.0	Mm.290083	NM_153522	ENSMUSG00000049281	Scn3b	1110001K16Rik|4833414B02Rik|Scnb3	sodium channel, voltage-gated, type III, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-42510169-3	chr18	42510071	42510271	+	978.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB7|LINE|L1	-1316.0	NM_001039474	56070.0	Mm.270511	NM_001039474	ENSMUSG00000024498	Tcerg1	2410022J09Rik|2900090C16Rik|AI428505|CA150b|FBP23|FBP28|Taf2s|ca150|p144	transcription elongation regulator 1 (CA150)	protein-coding	2.90214980034969	3.65502324048863	3.04699408542031	2.61732323051542	3.3653986014033	2.94397634538274	2.84597166983324	3.39371985376494	0.0982021488085131	0.875942949141502	0.998431161219273
Merged-chr19-5446545-2	chr19	5446445	5446645	+	815.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-1153.0	NM_010235	14283.0	Mm.6215	NM_010235	ENSMUSG00000024912	Fosl1	AW538199|Fra1|fra-1	fos-like antigen 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-80390870-4	chr18	80390780	80390980	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26626.0	NM_001190373	240444.0	Mm.279568	NM_001190373	ENSMUSG00000059852	Kcng2	AA591524	potassium voltage-gated channel, subfamily G, member 2	protein-coding	2.64658355744981	2.38807860779015	2.86345432130405	2.6001057722986	3.12847459045218	2.24464614800229	2.32772002278496	2.11026094804372	-0.200231267834516	0.795997511561368	0.998431161219273
Merged-chr9-95546975-4	chr9	95546953	95547153	+	999.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12764.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-124672391-2	chr2	124672291	124672491	+	577.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	18810.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-156615763-4	chr1	156615657	156615857	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001136104, intron 1 of 12)	intron (NM_001136104, intron 1 of 12)	56970.0	NM_001136104	11352.0	Mm.329515	NM_009595	ENSMUSG00000026596	Abl2	AA536808|Abll|Arg	v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)	protein-coding	5.72278514094454	5.12434546702732	4.87842154015559	5.85204544465169	6.0396370745805	5.6230931189713	5.78401293249702	5.83570487698178	0.41654353725373	0.146189991198412	0.596296396331935
Merged-chr17-24008481-1	chr17	24008381	24008581	+	589.0	f1_balb.idr	Intergenic	Intergenic	-10381.0	NM_133731	70835.0	Mm.157351	NM_133731	ENSMUSG00000045027	Prss22	4733401N09Rik|BSSP-4|SP001LA	protease, serine 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-43445888-8	chr1	43445801	43446001	+	968.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010879, exon 1 of 5)	5' UTR (NM_010879, exon 1 of 5)	150.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118671096-2	chr9	118670996	118671196	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 9 of 27)	intron (NM_133721, intron 9 of 27)	-40596.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-88544057-4	chr4	88543961	88544161	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14184.0	NM_206870	242517.0	Mm.377261	NM_206870	ENSMUSG00000096011	Ifna15	Gm12597|Ifnaa|MuIFN-alpha-A	interferon alpha 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-61332409-3	chr9	61332296	61332496	+	893.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38587.0	NR_045334	622037.0	Mm.126243	NR_045334	ENSMUSG00000111658	B930092H01Rik	-	RIKEN cDNA B930092H01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-44062489-2	chr16	44062389	44062589	+	753.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR52|LTR|ERVL	-20481.0	NM_001359085	207798.0	Mm.19316	NM_153528	ENSMUSG00000036292	Gramd1c	4921521N14Rik	GRAM domain containing 1C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122376516-4	chr8	122376407	122376607	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310650)	promoter-TSS (NM_001310650)	-102.0	NM_001310650	76014.0	Mm.241489	NM_001029993	ENSMUSG00000017478	Zc3h18	1190001B23Rik|5830416A07Rik|Nhn1	zinc finger CCCH-type containing 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-41767667-4	chr5	41767623	41767823	+	831.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3503.0	NM_007524	12020.0	Mm.2530	NM_007524	ENSMUSG00000049691	Nkx3-2	Bapx1|NKX3.2|Nkx-3.2	NK3 homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-37291519-4	chr13	37291412	37291612	+	857.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53833.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	-0.208283783115327	-0.190719793063729	-0.196438776803222	0.56960718211407	-0.207177803637276	-0.189435193761239	-0.195174548196752	0.578527616610749	0.0282038014051437	0.990994131209618	1
Merged-chr2-142905397-2	chr2	142905297	142905497	+	676.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	2432.0	NR_131921	75053.0	Mm.72638	NR_131921	ENSMUSG00000086504	Kif16bos	4930511F01Rik	kinesin family member 16B, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105289207-4	chr8	105289120	105289320	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_177788)	TTS (NM_177788)	308.0	NM_001166394	74356.0	Mm.204876	NM_028888	ENSMUSG00000014837	4931428F04Rik	AI426165|Kiaa0895l	RIKEN cDNA 4931428F04 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-20201852-4	chr11	20201762	20201962	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008996, intron 1 of 5)	CpG	450.0	NM_008996	19324.0	Mm.271944	NM_008996	ENSMUSG00000020149	Rab1a	Gtbp|Rab-1|Rab1|Ypt1|mKIAA3012	RAB1A, member RAS oncogene family	protein-coding	4.91555915530092	4.91638848912848	4.36269633294079	5.11211185174527	4.65567663675188	4.90414575494187	4.33522009787366	5.00735446790565	-0.131226881304947	0.710193728946121	0.998431161219273
Merged-chr11-75510805-4	chr11	75510725	75510925	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001029938, exon 4 of 8)	exon (NM_001029938, exon 4 of 8)	731.0	NM_001029938	280408.0	Mm.41416	NM_001029938	ENSMUSG00000038195	Rilp	AI835553|Gm857	Rab interacting lysosomal protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-38575124-1	chr18	38575024	38575224	+	568.0	f1_c57bl6.idr	Intergenic	Intergenic	26144.0	NM_011898	24066.0	Mm.42038	NM_011898	ENSMUSG00000024427	Spry4	A030006O18Rik|sprouty4	sprouty RTK signaling antagonist 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-17838364-4	chr17	17838304	17838504	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001162909, exon 8 of 9)	exon (NM_001162909, exon 8 of 9)	7429.0	NM_001162909	75202.0	Mm.227456	NM_029205	ENSMUSG00000080316	Spaca6	4930546H06Rik|9530079D04Rik|B230206P06Rik|Ncrna00085|SPACA6A|let-7e|mir-125a|mir-99b	sperm acrosome associated 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-83936788-2	chr18	83936688	83936888	+	992.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	149774.0	NM_001081300	110796.0	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-86804178-4	chr5	86804100	86804300	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347375)	promoter-TSS (NM_001347375)	-66.0	NM_001347375	231386.0	Mm.196325	NM_177680	ENSMUSG00000035851	Ythdc1	A730098D12Rik|C80342|mKIAA1966	YTH domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-100641307-4	chr3	100641199	100641399	+	983.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010763, intron 5 of 12)	intron (NM_010763, intron 5 of 12)	44174.0	NM_010763	17156.0	Mm.271617	NM_010763	ENSMUSG00000008763	Man1a2	AI428775|AI528764|AI854422|Man1b|PCR2	mannosidase, alpha, class 1A, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-62090392-3	chr18	62090289	62090489	+	787.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	89592.0	NM_007420	11555.0	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-24205477-3	chr18	24205376	24205576	+	939.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001160404)	promoter-TSS (NM_001160404)	132.0	NM_013814	14423.0	Mm.30249	NM_013814	ENSMUSG00000000420	Galnt1	-	polypeptide N-acetylgalactosaminyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-93481697-2	chr10	93481597	93481797	+	576.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001313897, intron 16 of 17)	Charlie4z|DNA|hAT-Charlie	-7071.0	NM_010401	15109.0	Mm.13000	NM_010401	ENSMUSG00000020017	Hal	Hsd|his|histidase	histidine ammonia lyase	protein-coding	-0.366626417179347	-0.352692175281507	-0.357249875608969	0.28625245588711	-0.365754612910758	-0.35166575818681	-0.356244039914784	0.294119739107777	0.0282770312316891	0.991511101680898	1
Merged-chr4-133339430-4	chr4	133339325	133339525	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199306)	promoter-TSS (NM_199306)	-110.0	NM_199306	230796.0	Mm.226576	NM_199306	ENSMUSG00000037622	Wdtc1	Gm695|adipose|adp	WD and tetratricopeptide repeats 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-148451173-2	chr5	148451073	148451273	+	859.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51269.0	NM_007513	11987.0	Mm.275489	NM_007513	ENSMUSG00000041313	Slc7a1	4831426K01Rik|AI447493|Atrc-1|Atrc1|Cat1|Rec-1|Rev-1|mCAT-1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-21068574-4	chr19	21068498	21068698	+	995.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36112.0	NR_126458	75354.0	Mm.243873	NR_126458		4930554I06Rik	-	RIKEN cDNA 4930554I06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47629014-3	chr17	47628890	47629090	+	854.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1700.0	NM_198421	224836.0	Mm.59393	NM_198421	ENSMUSG00000090115	Usp49	C330046L10Rik|Gm545	ubiquitin specific peptidase 49	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-78185164-4	chr10	78185054	78185254	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029546)	promoter-TSS (NM_029546)	-5.0	NM_029546	110816.0	Mm.103522	NM_029546	ENSMUSG00000032834	Pwp2	6530411D08Rik|Pwp2h|wdp103	PWP2 periodic tryptophan protein homolog (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-25628042-4	chr2	25627938	25628138	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007995)	promoter-TSS (NM_007995)	-64.0	NM_007995	14133.0	Mm.10510	NM_007995	ENSMUSG00000026938	Fcna	Fcn1	ficolin A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129374262-2	chr2	129374160	129374360	+	863.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_015474, intron 2 of 2)	MTC|LTR|ERVL-MaLR	-3121.0	NM_008361	16176.0	Mm.222830	NM_008361	ENSMUSG00000027398	Il1b	IL-1beta|Il-1b	interleukin 1 beta	protein-coding	0.365710194380467	0.597740485501031	0.291953404830284	0.408309846000926	0.115008795335501	0.606971137469712	0.12586493044238	0.121386046532749	-1.21447820879	0.531415445100128	1
Merged-chr12-99479602-2	chr12	99479502	99479702	+	926.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA4|LINE|L1	-29528.0	NM_183186	71375.0	Mm.341972	NM_183186	ENSMUSG00000033713	Foxn3	5430426H20Rik|AA589593|AW556347|Ches1|Ches1l|HTLFL1	forkhead box N3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-39586075-2	chr1	39585975	39586175	+	998.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-8728.0	NM_001033135	67702.0	Mm.28614	NM_001033135	ENSMUSG00000048234	Rnf149	1600023E10Rik|AV037261|C76763|Gm15832|Greul4	ring finger protein 149	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153704446-3	chr2	153704336	153704536	+	787.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-36851.0	NM_007896	13589.0	Mm.143877	NM_007896	ENSMUSG00000027479	Mapre1	5530600P05Rik|AI462499|AI504412|AW260097|BIM1p|D2Ertd459e|Eb1	microtubule-associated protein, RP/EB family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-19739935-2	chr14	19739835	19740035	+	699.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME1|LINE|L1	-11322.0	NM_008695	18074.0	Mm.20348	NM_008695	ENSMUSG00000021806	Nid2	AW547149|Ly111|NID-2|entactin-2|nidogen-2	nidogen 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-104293517-1	chr8	104293417	104293617	+	814.333313	f0_balb.idr	promoter-TSS (NM_027022)	promoter-TSS (NM_027022)	-336.0	NM_027022	73381.0	Mm.272746	NM_027022	ENSMUSG00000074127	Cmtm2a	1700001K04Rik|1700041N15Rik|1700063K20Rik|AI449770|ARR19|C32|CKLF3|CKLF4|CKLF5|Cklf|Cklf1|Cklfsf2-1b|Cklfsf2a|UCK-1	CKLF-like MARVEL transmembrane domain containing 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-94370831-4	chr16	94370660	94370860	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159620)	promoter-TSS (NM_001159620)	21.0	NM_009441	22129.0	Mm.213408	NM_009441	ENSMUSG00000040785	Ttc3	2610202A04Rik|AA409221|D16Ium21|D16Ium21e|TPRD|mKIAA4119	tetratricopeptide repeat domain 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-20784476-4	chr13	20784376	20784576	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9637.0	NM_001281854	27052.0	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-80497918-4	chr15	80497819	80498019	+	937.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163189, intron 4 of 5)	ORR1A2|LTR|ERVL-MaLR	-59316.0	NR_155274	102633578.0	Mm.397484	NR_155274	ENSMUSG00000115888	Gm31369	-	predicted gene, 31369	ncRNA	2.99071293040392	3.14792822081062	3.03757298534273	2.69340247001446	4.22548060820469	3.04490038837928	3.83048121753093	4.04481284855456	1.39110514879198	0.0141191432539441	0.138996296095815
Merged-chr6-15842058-4	chr6	15841950	15842150	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	121389.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-80154869-5	chr11	80154742	80154942	+	849.81665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172133, intron 1 of 10)	intron (NM_172133, intron 1 of 10)	680.0	NM_172133	216991.0	Mm.341520	NM_172133	ENSMUSG00000020709	Adap2	Centa2	ArfGAP with dual PH domains 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-40949428-4	chr15	40949292	40949492	+	792.025024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356998, intron 3 of 6)	(TTC)n|Simple_repeat|Simple_repeat	-224309.0	NR_151516	100418302.0		NR_151516		4930555K19Rik	-	leucine rich repeat and sterile alpha motif containing 1 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-85106218-1	chr1	85106118	85106318	+	806.0	f1_balb.idr	intron (NM_213615, intron 1 of 6)	intron (NM_213615, intron 1 of 6)	3635.0	NM_213615	381287.0	Mm.487565	NM_213615	ENSMUSG00000089844	A530032D15Rik	Gm1888	RIKEN cDNA A530032D15Rik gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128702805-4	chr10	128702710	128702910	+	797.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183417, intron 3 of 7)	RSINE1|SINE|B4	2241.0	NM_183417	12566.0	Mm.111326	NM_016756	ENSMUSG00000025358	Cdk2	A630093N05Rik	cyclin-dependent kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27030367-2	chr17	27030295	27030495	+	607.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027544, intron 1 of 5)	intron (NM_027544, intron 1 of 5)	1136.0	NM_027544	70772.0	Mm.440437	NM_027544	ENSMUSG00000048731	Ggnbp1	0610031G08Rik|mdf	gametogenetin binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-79307207-4	chr11	79307101	79307301	+	941.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32691.0	NM_010897	18015.0	Mm.255596	NM_010897	ENSMUSG00000020716	Nf1	AW494271|Dsk9|E030030H24Rik|Mhdadsk9|Nf-1	neurofibromin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-3712545-4	chr7	3712468	3712668	+	922.783325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011095)	TTS (NM_011095)	7814.0	NM_001357394	18733.0	Mm.326531	NM_011095	ENSMUSG00000058818	Pirb	Gp91|LIR-3|Lilrb3|PIR-B	paired Ig-like receptor B	protein-coding	2.73083197100831	2.63235458888556	1.42495101488555	1.91748453388716	1.09636312013836	2.33932685848176	2.36597460786823	1.13939795190985	-0.919419467976557	0.404316577285038	0.889437164331846
Merged-chr5-64212366-4	chr5	64212306	64212506	+	980.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019636, intron 2 of 19)	intron (NM_019636, intron 2 of 19)	-17951.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-43356403-2	chr5	43356303	43356503	+	585.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-121049.0	NR_028417	665934.0	Mm.381491	NR_028417	ENSMUSG00000085720	Gm7854	EG665934	predicted gene 7854	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-14505094-3	chr1	14504966	14505166	+	669.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-194867.0	NM_010164	14048.0	Mm.250185	NM_010164	ENSMUSG00000025932	Eya1	bor	EYA transcriptional coactivator and phosphatase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-98997906-4	chr6	98997812	98998012	+	845.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001197321, intron 8 of 17)	intron (NM_001197321, intron 8 of 17)	30386.0	NM_001197322	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-87619450-2	chr1	87619350	87619550	+	883.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010566)	promoter-TSS (NM_010566)	-862.0	NM_001110193	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-81849858-2	chr7	81849739	81849939	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-9162.0	NR_111910	107769.0	Mm.221412	NM_145375	ENSMUSG00000038623	Tm6sf1	AI428514|BC023123|C630016D09Rik	transmembrane 6 superfamily member 1	protein-coding	1.15931192938864	0.968648758321568	0.592411251908467	1.23976798281662	1.07905853206281	0.603552800546942	1.07523091688886	0.586587690104879	-0.756054792974442	0.635319642351521	1
Merged-chr3-79674319-2	chr3	79674219	79674419	+	573.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_212452, intron 5 of 17)	intron (NM_212452, intron 5 of 17)	45240.0	NM_029482	75939.0	Mm.221520	NM_029482	ENSMUSG00000027811	4930579G24Rik	-	RIKEN cDNA 4930579G24 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-51387358-4	chr2	51387262	51387462	+	871.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50538.0	NR_130155	73375.0	Mm.396227	NR_130155	ENSMUSG00000086007	1700057H21Rik	-	RIKEN cDNA 1700057H21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-61576097-2	chr2	61575997	61576197	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2489.0	NM_011529	21353.0	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-155777342-1	chr2	155777242	155777442	+	673.0	f1_balb.idr	intron (NM_010808, intron 1 of 8)	CR1_Mam|LINE|CR1	2000.0	NM_010808	17391.0	Mm.389325	NM_010808	ENSMUSG00000027612	Mmp24	AU040325|MMP-21|MT5-MMP|MT5MMP|MTMMP5	matrix metallopeptidase 24	protein-coding	0.391008122234193	0.799646879180864	0.0948751465547838	0.0885234457480681	0.0794374780734361	0.104838240803821	1.15068816728744	0.0896376214215436	0.458806323900049	0.8259547009579	1
Merged-chr16-91455651-2	chr16	91455551	91455751	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	C-rich|Low_complexity|Low_complexity	-9453.0	NR_077219	100503120.0	Mm.387130	NR_077219	ENSMUSG00000084866	A930006K02Rik	-	RIKEN cDNA A930006K02 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-39446818-4	chr18	39446722	39446922	+	947.724976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008173, intron 1 of 7)	intron (NM_008173, intron 1 of 7)	40423.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-86992615-2	chr10	86992515	86992715	+	860.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_138673, intron 3 of 68)	intron (NM_138673, intron 3 of 68)	15327.0	NM_138673	192188.0	Mm.279611	NM_138673	ENSMUSG00000035459	Stab2	FEEL-2|FELL|MFEEL-2|STAB-2	stabilin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-43509148-4	chr18	43509034	43509234	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70848.0	NM_001291455	22240.0	Mm.8180	NM_009468	ENSMUSG00000024501	Dpysl3	CRMP-4|DRP-3|TUC4|ULIP-1|Ulip|Ulip1	dihydropyrimidinase-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-17410454-6	chr6	17410412	17410612	+	904.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR81|LTR|Gypsy	-53445.0	NM_008591	17295.0	Mm.86844	NM_008591	ENSMUSG00000009376	Met	AI838057|HGF|HGFR|Par4|c-Met	met proto-oncogene	protein-coding	2.66870599330697	2.89245521436472	4.17821822908452	3.63343416230422	1.72956986427372	3.5350156772319	2.67414869615714	3.05182321646289	-0.950828309895796	0.186458212206794	0.663572957303869
Merged-chr18-6240848-3	chr18	6240760	6240960	+	988.388855	f0_balb.idr|f0_c57.idr|f1_balb.idr	intron (NM_008448, intron 1 of 25)	CpG	664.0	NM_008448	16573.0	Mm.223744	NM_008448	ENSMUSG00000006740	Kif5b	AL022807|Khc|Khcs|Kns1|Ukhc	kinesin family member 5B	protein-coding	2.79918012903987	3.02837885960724	2.68376792011567	3.28884916830006	3.07794863988111	3.05036824513976	3.61156512582232	2.96392185767788	0.403994973424039	0.516426622191618	0.947641799425091
Merged-chr9-37248572-3	chr9	37248463	37248663	+	881.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145960, intron 1 of 18)	intron (NM_001145960, intron 1 of 18)	7175.0	NM_020258	56857.0	Mm.440037	NM_020258	ENSMUSG00000032122	Slc37a2	G3PP|Slc37a1|cI-2|ci2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-82283286-4	chr1	82283209	82283409	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010570, intron 1 of 1)	CpG	8130.0	NM_010570	16367.0	Mm.4952	NM_010570	ENSMUSG00000055980	Irs1	G972R|IRS-1	insulin receptor substrate 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-150952900-2	chr5	150952800	150953000	+	706.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_013823, exon 1 of 5)	exon (NM_013823, exon 1 of 5)	293.0	NM_013823	16591.0	Mm.6500	NM_013823	ENSMUSG00000058488	Kl	alpha-kl	klotho	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-53009124-2	chr10	53009024	53009224	+	875.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178675, intron 2 of 7)	intron (NM_178675, intron 2 of 7)	-226063.0	NR_152766	102639992.0	Mm.375738	NR_152766	ENSMUSG00000112835	Gm36173	-	predicted gene, 36173	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-15758475-2	chr13	15758375	15758575	+	593.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44155.0	NR_045507	71071.0	Mm.380845	NR_045507	ENSMUSG00000113960	4933412O06Rik	-	RIKEN cDNA 4933412O06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27688166-4	chr2	27688068	27688268	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011305, intron 1 of 9)	intron (NM_011305, intron 1 of 9)	10967.0	NM_011305	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-66988009-3	chr1	66987888	66988088	+	857.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42932.0	NM_021285	17901.0	Mm.1000	NM_021285	ENSMUSG00000061816	Myl1	AI325107|MLC1f|MLC3f|Mylf	myosin, light polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-47530194-4	chr9	47530090	47530290	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310841)	promoter-TSS (NM_001310841)	20.0	NM_001310841	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	5.58129876075645	5.72780900767283	5.36826565634918	5.17488055335037	6.09385227094232	5.29060425350218	4.69718596703925	5.06407795741645	-0.0888015472139966	0.790868237272272	0.998431161219273
Merged-chr2-24910988-1	chr2	24910888	24911088	+	544.0	f1_c57bl6.idr	intron (NM_001012518, intron 1 of 26)	B1_Mus1|SINE|Alu	8621.0	NM_172545	77683.0	Mm.24176	NM_172545	ENSMUSG00000036893	Ehmt1	9230102N17Rik|D330003E03|Eu-HMTase1|GLP|GLP1|KMT1D|mKIAA1876	euchromatic histone methyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-60747158-5	chr18	60747091	60747291	+	819.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001348101)	promoter-TSS (NM_001348101)	-445.0	NM_001348101	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-79757284-4	chr15	79757192	79757392	+	952.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045069, exon 4 of 4)	non-coding (NR_045069, exon 4 of 4)	14594.0	NR_045069	100504191.0	Mm.421420	NR_045069	ENSMUSG00000087543	Gm16576	-	predicted gene 16576	ncRNA	3.48044087519999	4.10465416854314	3.05641591740858	3.24521764432426	3.5084378196816	1.72135568404795	2.71010002204923	3.17603501312705	-0.938939599615836	0.169232339116864	0.636165929777423
Merged-chr3-10300137-2	chr3	10300037	10300237	+	776.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029310, intron 1 of 5)	(CA)n|Simple_repeat|Simple_repeat	1046.0	NM_001357159	75497.0	Mm.47052	NM_029310	ENSMUSG00000027530	Fabp12	1700008G05Rik	fatty acid binding protein 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-57977022-2	chr1	57976922	57977122	+	634.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6938.0	NM_001159865	51960.0	Mm.339711	NM_030211	ENSMUSG00000054770	Kctd18	4932411A20Rik|6530404F10Rik	potassium channel tetramerisation domain containing 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-136129434-3	chr1	136129332	136129532	+	851.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_046167, exon 3 of 4)	non-coding (NR_046167, exon 3 of 4)	1751.0	NR_046170	329253.0	Mm.487858	NR_046167	ENSMUSG00000086264	Gm15850	6530439I21	predicted gene 15850	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-51677769-3	chr10	51677681	51677881	+	684.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159389)	promoter-TSS (NM_001159389)	21.0	NM_001159389	320995.0	Mm.109190	NM_177306	ENSMUSG00000019900	Rfx6	4930572O07Rik|Rfxdc1	regulatory factor X, 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-94947495-1	chr9	94947395	94947595	+	682.0	f1_balb.idr	intron (NM_177909, intron 8 of 15)	intron (NM_177909, intron 8 of 15)	195666.0	NR_106116	102465763.0		NR_106116	ENSMUSG00000098251	Mir7656	Gm27614|mmu-mir-7656	microRNA 7656	ncRNA	0.814355100979168	0.864831271678871	0.84870186956968	1.79517044560218	1.41576716054352	1.73595039608591	1.77612316517568	1.36709643848775	1.47443926294705	0.284088790898509	0.787545589926135
Merged-chr6-127237385-2	chr6	127237285	127237485	+	698.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	70582.0	NR_073373	232386.0	Mm.257367	NR_073373	ENSMUSG00000107153	Gm38404	D130058E03	predicted gene, 38404	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-80091278-4	chr15	80091209	80091409	+	881.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009303)	promoter-TSS (NM_009303)	-25.0	NM_009303	20972.0	Mm.230301	NM_009303	ENSMUSG00000022415	Syngr1	R75468|Syngr1b|p29	synaptogyrin 1	protein-coding	0.528859851009093	1.43025651571454	1.16075527245227	0.87240445676254	0.948882753490296	0.773510248063904	0.747430501243746	0.542813632616651	-1.43985933568141	0.353064423345905	1
Merged-chr12-111435351-2	chr12	111435251	111435451	+	724.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7310.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-17282405-1	chr6	17282305	17282505	+	544.0	f0_balb.idr	3' UTR (NM_001277756, exon 2 of 2)	3' UTR (NM_001277756, exon 2 of 2)	1220.0	NM_016900	12390.0	Mm.396075	NM_016900	ENSMUSG00000000058	Cav2	AI447843	caveolin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-95711487-4	chr4	95711382	95711582	+	795.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029347, intron 6 of 10)	intron (NM_029347, intron 6 of 10)	132061.0	NM_029347	75578.0	Mm.276098	NM_029347	ENSMUSG00000028573	Fggy	2310009E04Rik	FGGY carbohydrate kinase domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-51228218-4	chr3	51228138	51228338	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009834, intron 1 of 2)	B3|SINE|B2	3791.0	NM_009834	12457.0	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-123016057-3	chr9	123015983	123016183	+	655.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010620, intron 32 of 34)	ORR1E|LTR|ERVL-MaLR	-5243.0	NM_025339	66079.0	Mm.482265	NM_025339	ENSMUSG00000066233	Tmem42	0610027O18Rik|4933429E06Rik|AV003444|D9Ertd662e	transmembrane protein 42	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-135647699-1	chr7	135647599	135647799	+	541.0	f1_c57bl6.idr	TTS (NR_015548)	TTS (NR_015548)	-4200.0	NM_001316681	19267.0	Mm.945	NM_011212	ENSMUSG00000041836	Ptpre	PTPe|PTPepsilon|RPTPepsilon	protein tyrosine phosphatase, receptor type, E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69584680-2	chr11	69584580	69584780	+	947.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001127233, intron 1 of 10)	intron (NM_001127233, intron 1 of 10)	4321.0	NM_001127233	22059.0	Mm.222	NM_011640	ENSMUSG00000059552	Trp53	Tp53|bbl|bfy|bhy|p44|p53	transformation related protein 53	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-79120838-2	chr12	79120738	79120938	+	824.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-9950.0	NM_009705	11847.0	Mm.3506	NM_009705	ENSMUSG00000021125	Arg2	AII|AU022422	arginase type II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81408296-2	chr10	81408196	81408396	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026756, intron 4 of 8)	intron (NM_026756, intron 4 of 8)	-1279.0	NR_152732	102634174.0	Mm.392213	NR_152732	ENSMUSG00000085327	Gm16104	-	predicted gene 16104	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-10429251-4	chr10	10429146	10429346	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127353, intron 9 of 36)	intron (NM_001127353, intron 9 of 36)	43068.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-57116106-4	chr2	57116007	57116207	+	976.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001139509, intron 1 of 7)	intron (NM_001139509, intron 1 of 7)	-1069.0	NM_013613	18227.0	Mm.3507	NM_013613	ENSMUSG00000026826	Nr4a2	HZF-3|NOT|Nurr1|RNR-1|TINOR|TINUR	nuclear receptor subfamily 4, group A, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119436600-3	chr11	119436474	119436674	+	872.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46102.0	NR_035453	100316690.0		NR_035453	ENSMUSG00000088015	Mir1932	mir-1932|mmu-mir-1932	microRNA 1932	ncRNA	0.0867209949995429	0.111238926420071	0.306953212433587	0.903327550252337	1.11957629023469	0.113015794484872	0.105060527773477	0.0982013646064779	0.291925878305998	0.889733141770944	1
Merged-chr8-115701948-3	chr8	115701850	115702050	+	889.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4944.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-67312824-1	chr15	67312724	67312924	+	637.0	f0_balb.idr	intron (NR_045140, intron 5 of 8)	intron (NR_045140, intron 5 of 8)	86055.0	NR_045140	69334.0	Mm.63770	NR_045140	ENSMUSG00000102069	1700012I11Rik	-	RIKEN cDNA 1700012I11 gene	ncRNA	0.60612489106564	0.335658192659763	0.327113854122846	0.320466134506799	0.474676301625887	1.01342635140338	0.528463209222041	1.27643085942498	2.96883674600779	0.102126186289415	1
Merged-chr17-25761496-2	chr17	25761395	25761595	+	688.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Cheshire|DNA|hAT-Charlie	-7117.0	NM_001356286	56047.0	Mm.17510	NM_018857	ENSMUSG00000063011	Msln	MPF	mesothelin	protein-coding	0.873605407569323	1.4356937033654	1.59174379724014	0.720441172037487	0.706138540848992	1.15622919872411	1.50476679731165	1.07902973681452	-0.274913133262576	0.846992231008277	0.998431161219273
Merged-chr2-73553064-4	chr2	73552970	73553170	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23583.0	NM_153138	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-77713490-3	chr18	77713309	77713509	+	928.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027978)	promoter-TSS (NR_027978)	601.0	NM_178670	212163.0	Mm.23293	NM_178670	ENSMUSG00000047466	8030462N17Rik	Akd2|Ark2N	RIKEN cDNA 8030462N17 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-121704249-5	chr11	121704207	121704407	+	816.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144797, intron 1 of 3)	intron (NM_144797, intron 1 of 3)	1880.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-41243288-1	chr8	41243188	41243388	+	615.0	f0_c57.idr	intron (NM_023662, intron 1 of 37)	intron (NM_023662, intron 1 of 37)	3529.0	NM_023662	18536.0	Mm.117896	NM_023662	ENSMUSG00000031592	Pcm1	2600002H09Rik|9430077F19Rik|C030044G17Rik	pericentriolar material 1	protein-coding	2.4795160247418	1.0920271297355	2.70761722731097	1.29377137185686	2.7440216269314	1.09894921113641	1.06751890129164	2.10546373321928	-0.272111291654286	0.824084955595348	0.998431161219273
Merged-chr17-46829728-2	chr17	46829628	46829828	+	564.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001100452, intron 3 of 10)	intron (NM_001100452, intron 3 of 10)	1685.0	NM_001100452	210982.0	Mm.37642	NM_001100452	ENSMUSG00000036568	Bicral	Gltscr1l|mKIAA0240	BRD4 interacting chromatin remodeling complex associated protein like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-22165816-4	chr10	22165702	22165902	+	983.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359809, intron 1 of 7)	intron (NM_001359809, intron 1 of 7)	7193.0	NM_009016	19368.0	Mm.458004	NM_009016		Raet1a	RAE-1alpha|Rae1alpha|Raet1	retinoic acid early transcript 1, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-121437232-4	chr14	121437117	121437317	+	789.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57987.0	NM_145465	223255.0	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-67330429-2	chr17	67330329	67330529	+	637.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	24030.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	-0.219711355542923	-0.756277302245537	-0.75931612068893	-0.761653780761687	-0.391964611888452	-0.755590941894944	-0.758646744977994	-0.761245834329488	-0.676295854267163	0.822509139760631	1
Merged-chr15-7137105-4	chr15	7137030	7137230	+	905.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113386, intron 2 of 16)	intron (NM_001113386, intron 2 of 16)	-3412.0	NM_013584	16880.0	Mm.149720	NM_013584	ENSMUSG00000054263	Lifr	A230075M04Rik|AW061234|LIF	leukemia inhibitory factor receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-115818905-4	chr3	115818821	115819021	+	968.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	69138.0	NR_027894	68161.0	Mm.392043	NR_015487	ENSMUSG00000054426	A930005H10Rik	-	RIKEN cDNA A930005H10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-104471984-2	chr14	104471884	104472084	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3985.0	NM_011143	18996.0	Mm.246550	NM_011143	ENSMUSG00000048349	Pou4f1	Brn-3|Brn-3.0|Brn3|Brn3.0|Brn3a|E130119J07Rik	POU domain, class 4, transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-59941632-4	chr11	59941529	59941729	+	733.858337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6518.0	NR_045273	100504121.0	Mm.383770	NR_045273	ENSMUSG00000085260	Med9os	1700013G23Rik	mediator complex subunit 9, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-58129287-1	chr13	58129187	58129387	+	1000.0	f1_c57bl6.idr	promoter-TSS (NM_029872)	promoter-TSS (NM_029872)	-731.0	NM_029872	77134.0	Mm.490274	NM_029872	ENSMUSG00000007836	Hnrnpa0	1110055B05Rik|3010025E17Rik|Hnrpa0|hnRNP A0	heterogeneous nuclear ribonucleoprotein A0	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-8757593-2	chr18	8757493	8757693	+	978.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-455263.0	NM_008058	14370.0	Mm.184289	NM_008058	ENSMUSG00000036904	Fzd8	Fz8	frizzled class receptor 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-73023957-2	chr11	73023857	73024057	+	747.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_018883, intron 1 of 15)	L2a|LINE|L2	4949.0	NM_018883	55984.0	Mm.9998	NM_018883	ENSMUSG00000020785	Camkk1	AI846603|CaMKKalpha|Camkk	calcium/calmodulin-dependent protein kinase kinase 1, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-10453122-4	chr14	10453019	10453219	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360141, intron 4 of 9)	intron (NM_001360141, intron 4 of 9)	339.0	NM_001308286	14198.0	Mm.397619	NM_010210	ENSMUSG00000060579	Fhit	AW045638|Fra14A2	fragile histidine triad gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-32398813-2	chr18	32398713	32398913	+	645.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360876, intron 1 of 17)	intron (NM_001360876, intron 1 of 17)	-20529.0	NR_045403	402767.0	Mm.385109	NR_045403	ENSMUSG00000097413	A830052D11Rik	-	RIKEN cDNA A830052D11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-20891176-4	chr1	20891071	20891271	+	942.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040492)	promoter-TSS (NR_040492)	623.0	NM_028829	74229.0	Mm.40780	NM_028829	ENSMUSG00000025931	Paqr8	1700019B16Rik|3110001D06Rik	progestin and adipoQ receptor family member VIII	protein-coding	2.73571010830021	2.95352026325032	2.74490382895558	2.9704787750661	3.26735390122379	2.97460604271674	2.87877645052545	2.68298379803714	0.223389468730514	0.731118051733294	0.998431161219273
Merged-chr7-16243619-3	chr7	16243430	16243630	+	883.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176912, intron 1 of 1)	intron (NM_176912, intron 1 of 1)	624.0	NM_176912	319430.0	Mm.239570	NM_176912	ENSMUSG00000074361	C5ar2	C5L2|E030029A11Rik|Gpr77	complement component 5a receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44839479-2	chr7	44839379	44839579	+	860.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001171024, intron 8 of 8)	intron (NM_001171024, intron 8 of 8)	3191.0	NM_010215	14204.0	Mm.2565	NM_010215	ENSMUSG00000074141	Il4i1	Fig1|Fig1-ps|LAAO|LAO	interleukin 4 induced 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-41589944-3	chr4	41589846	41590046	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175138, intron 1 of 19)	intron (NM_175138, intron 1 of 19)	20152.0	NM_175138	68922.0	Mm.79127	NM_175138	ENSMUSG00000061322	Dnaic1	1110066F04Rik|BB124644|Dnai1|b2b1526Clo	dynein, axonemal, intermediate chain 1	protein-coding	5.11443126956866	4.81469847123159	3.91817083024836	5.40239167413901	2.89769184943307	3.02515954430777	2.9057336724225	3.3045017546691	-2.54099041393714	2.81750701359688e-07	2.21426522810931e-05
Merged-chr17-71616131-4	chr17	71616008	71616208	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175639)	promoter-TSS (NM_175639)	-107.0	NM_175639	72515.0	Mm.257762	NM_175639	ENSMUSG00000041057	Wdr43	2610318G08Rik|AU020887|AV024208|Wrd43|mKIAA0007	WD repeat domain 43	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-80671945-4	chr1	80671838	80672038	+	743.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175291, intron 1 of 55)	intron (NM_175291, intron 1 of 55)	-6586.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-116594910-4	chr3	116594799	116594999	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289571)	promoter-TSS (NM_001289571)	-12.0	NR_152258	229780.0	Mm.259648	NM_030016	ENSMUSG00000033439	Trmt13	4631408H19Rik|A330067P21|A930028L21Rik|Ccdc76	tRNA methyltransferase 13	protein-coding	5.33846457781374	5.31136264648406	5.44567340388206	5.71520904057188	5.51213097176091	5.61125355835418	5.62135074836296	5.55311086178705	0.125205450981309	0.633357838692345	0.982417279970648
Merged-chr6-7738071-4	chr6	7737964	7738164	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13D5|LTR|ERVK	-44882.0	NM_012055	27053.0	Mm.2942	NM_012055	ENSMUSG00000029752	Asns	-	asparagine synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-8746844-4	chr3	8746757	8746957	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-79819.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-70851864-4	chr17	70851769	70851969	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009372)	promoter-TSS (NM_009372)	-135.0	NM_001164075	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44089053-4	chr9	44088977	44089177	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198091, intron 1 of 11)	intron (NM_198091, intron 1 of 11)	4157.0	NM_198091	53376.0	Mm.272770	NM_016808	ENSMUSG00000032010	Usp2	B930035K21Rik|Ubp41	ubiquitin specific peptidase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-7915083-4	chr17	7914964	7915164	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10936.0	NM_145968	72536.0	Mm.119680	NM_145968	ENSMUSG00000033450	Tagap	2610315E15Rik|TRD|Tcd-1|Tcd1|Tcd1a|tcs-1|tcs1	T cell activation Rho GTPase activating protein	protein-coding	3.91016383738084	3.62778224436596	3.24677065715875	2.82718518314567	3.9817512142125	3.48115573256075	3.05899998631064	2.7105419737573	-0.0993920992488506	0.869505351423426	0.998431161219273
Merged-chr5-123088434-2	chr5	123088334	123088534	+	576.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039723, intron 1 of 11)	intron (NM_001039723, intron 1 of 11)	12159.0	NM_001039723	330189.0	Mm.391872	NM_001039723	ENSMUSG00000054434	Tmem120b	-	transmembrane protein 120B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-102333861-1	chr7	102333761	102333961	+	560.0	f0_balb.idr	intron (NM_009287, intron 1 of 11)	RMER6A|LTR|ERVK	66037.0	NM_009287	20866.0	Mm.645	NM_009287	ENSMUSG00000030987	Stim1	SIM	stromal interaction molecule 1	protein-coding	-0.833459818380371	-0.821132012327172	-0.825778240616309	-0.82865801136478	-0.671453285421032	-0.818080273044482	0.00822697114283577	-0.828154234050659	3.33227495478691	0.24496204007974	1
Merged-chr6-134927284-5	chr6	134927226	134927426	+	945.841675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1766.0	NR_037956	381822.0	Mm.5935	NR_037955	ENSMUSG00000098318	Lockd	1190002F15Rik|AI120476|Droc	lncRNA downstream of Cdkn1b	ncRNA	1.12830419870389	0.773612625432292	0.566333737522309	1.10917258595181	0.832577721202885	0.779146621056593	1.26700116099341	0.560785748081208	-0.142770883243595	0.926456179551659	1
Merged-chr2-90453606-2	chr2	90453506	90453706	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 11 of 23)	intron (NM_008982, intron 11 of 23)	25568.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-79690609-4	chr15	79690516	79690716	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013818)	promoter-TSS (NM_013818)	-280.0	NM_013818	14904.0	Mm.19080	NM_013818	ENSMUSG00000042535	Gtpbp1	AL022987|AW045683|C85212|GP-1|Gtpbp	GTP binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-58271358-4	chr9	58271253	58271453	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18189.0	NM_026942	69106.0	Mm.216502	NM_026942	ENSMUSG00000032333	Stoml1	1810015E19Rik|AI847431|SLP1|STORP|UNC24|WPB72	stomatin-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-75733424-4	chr2	75733345	75733545	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28782.0	NM_010902	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	3.3813125240506	2.94731583021463	3.59109372470098	2.11285356278017	3.12253348245766	2.97007913678363	4.29712677452752	3.00300044792177	0.573182525865699	0.39296469991113	0.881708727627554
Merged-chr11-4866039-2	chr11	4865938	4866138	+	740.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7913.0	NM_008698	18082.0	Mm.293716	NM_008698	ENSMUSG00000034285	Nipsnap1	-	nipsnap homolog 1	protein-coding	0.972576268244192	1.30425653500828	0.807462664333924	1.02413971997645	2.4060174121644	1.49555169788984	0.812039567668854	1.95403832254298	2.66958170039891	0.0441121546172527	0.301856182294133
Merged-chr10-85917076-4	chr10	85916945	85917145	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302886)	promoter-TSS (NM_001302886)	-59.0	NM_001302886	72843.0	Mm.25307	NM_181650	ENSMUSG00000035529	Prdm4	1700031E19Rik|2810470D21Rik|AW552272|SC-1|SC1	PR domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-172632627-3	chr1	172632519	172632719	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026725, exon 1 of 2)	exon (NM_026725, exon 1 of 2)	355.0	NM_026725	68440.0	Mm.33024	NM_026725	ENSMUSG00000026544	Dusp23	1300005N15Rik|LDP-3	dual specificity phosphatase 23	protein-coding	2.96328433172574	3.23781837588448	3.64963097722153	1.62473401232928	3.64311935010304	4.37338483352912	3.4414498645484	3.56634613768633	1.15510834304	0.0753411839468251	0.416052558297334
Merged-chr3-79287311-4	chr3	79287201	79287401	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-58075.0	NM_001142953	100233207.0	Mm.373801	NM_001142953	ENSMUSG00000091685	Gm17359	-	predicted gene, 17359	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-95935227-4	chr5	95935122	95935322	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21717.0	NM_018866	55985.0	Mm.10116	NM_018866	ENSMUSG00000023078	Cxcl13	4631412M08Rik|ANGIE2|Angie|BCA-1|BLC|BLR1L|Scyb13	chemokine (C-X-C motif) ligand 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-144005964-2	chr2	144005864	144006064	+	856.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133626, intron 1 of 2)	intron (NM_133626, intron 1 of 2)	5299.0	NM_133626	81910.0	Mm.13705	NM_024281	ENSMUSG00000027422	Rrbp1	1700087N07Rik|5730465C04Rik|ES/130|mKIAA1398|mRRp0|mRRp1.8|mRRp10|mRRp15a|mRRp15b|mRRp16.8|mRRp2|mRRp41|mRRp47|mRRp5.4|p180	ribosome binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-65614362-1	chr3	65614262	65614462	+	699.0	f1_c57bl6.idr	Intergenic	Intergenic	-44926.0	NR_106200	102465905.0		NR_106200	ENSMUSG00000098944	Mir8120	Gm27637|mmu-mir-8120	microRNA 8120	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-7012640-2	chr19	7012540	7012740	+	756.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001362399, intron 6 of 14)	B4A|SINE|B4	6829.0	NM_153795	108101.0	Mm.157591	NM_153795	ENSMUSG00000024965	Fermt3	C79673|Kindlin3	fermitin family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-9131180-4	chr15	9131061	9131261	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013787, intron 2 of 9)	intron (NM_013787, intron 2 of 9)	9293.0	NM_013787	27401.0	Mm.35584	NM_013787	ENSMUSG00000054115	Skp2	4930500A04Rik|FBXL1|FWD1|p45	S-phase kinase-associated protein 2 (p45)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85813877-2	chr12	85813777	85813977	+	582.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_145447)	TTS (NM_145447)	11016.0	NM_001360451	58520.0	Mm.143795	NM_021446	ENSMUSG00000021252	Erg28	0610007P14Rik|1190004E09Rik|AU019315|C77855|ORF11	ergosterol biosynthesis 28	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-60144548-4	chr19	60144503	60144703	+	843.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_026942)	promoter-TSS (NR_026942)	-72.0	NR_026942	107376.0	Mm.245813	NR_026942	ENSMUSG00000053117	E330013P04Rik	9930018I18Rik|AW492152	RIKEN cDNA E330013P04 gene	ncRNA	2.81397741055791	2.63983933494452	3.86576819073749	2.74597549512111	2.83831228123936	3.19010570945067	3.94615680864531	2.98648931674279	0.309015572379276	0.639253135690516	0.982599433509505
Merged-chr12-17881767-4	chr12	17881627	17881827	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	190918.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	4.81433677458619	5.21726912848709	4.75596505507471	4.63334889731097	4.60789072643744	5.35054612216328	4.44218769398175	3.9216430636973	-0.242897773666286	0.532971188742286	0.952082138848632
Merged-chr2-158160099-4	chr2	158159972	158160172	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13680.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-80814042-4	chr12	80813948	80814148	+	992.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001242419, intron 1 of 6)	intron (NM_001242419, intron 1 of 6)	23516.0	NM_001242419	217684.0	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-144703637-2	chr2	144703537	144703737	+	593.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025314, intron 4 of 5)	intron (NM_025314, intron 4 of 5)	103684.0	NM_025314	66044.0	Mm.28109	NM_025314	ENSMUSG00000027430	Dtd1	0610006H08Rik|DTD|DUE-B|Hars2	D-tyrosyl-tRNA deacylase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-123106023-2	chr8	123105923	123106123	+	815.166687	f1_balb.idr|f1_c57bl6.idr	TTS (NM_016738)	TTS (NM_016738)	1048.0	NR_106047	102465654.0		NR_106047	ENSMUSG00000098550	Mir7079	Gm27278|mmu-mir-7079	microRNA 7079	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-78467620-2	chr10	78467520	78467720	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2672.0	NM_172134	216134.0	Mm.206159	NM_172134	ENSMUSG00000032788	Pdxk	2310036D04Rik|AA119688|C77999	pyridoxal (pyridoxine, vitamin B6) kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-56402581-1	chr14	56402481	56402681	+	543.0	f0_c57.idr	promoter-TSS (NM_001033043)	promoter-TSS (NM_001033043)	-116.0	NM_001033043	30054.0	Mm.287783	NM_001033043	ENSMUSG00000000365	Rnf17	MMIP-2|Mmip2|TDRD4	ring finger protein 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-122381748-2	chr2	122381648	122381848	+	586.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-12830.0	NM_001013829	435684.0	Mm.458215	NM_001013829	ENSMUSG00000033256	Shf	-	Src homology 2 domain containing F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-79246465-2	chr7	79246365	79246565	+	655.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26801.0	NM_018811	54608.0	Mm.365490	NM_018811	ENSMUSG00000039202	Abhd2	2210009N18Rik|LABH2|Labh-2	abhydrolase domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-44938161-3	chr8	44938086	44938286	+	927.1333619999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-12022.0	NM_001081286	14107.0	Mm.27365	NM_001081286	ENSMUSG00000070047	Fat1	2310038E12Rik|AU023433|Fath|mFat1	FAT atypical cadherin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-74946530-2	chr11	74946430	74946630	+	627.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001002764, intron 8 of 18)	intron (NM_001002764, intron 8 of 18)	20658.0	NM_001002764	103677.0	Mm.288460	NM_001002764	ENSMUSG00000038290	Smg6	AI317223|AU041178	Smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-104247953-4	chr8	104247885	104248085	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045642, intron 1 of 8)	intron (NR_045642, intron 1 of 8)	573.0	NR_045642	57813.0	Mm.183110	NM_021028	ENSMUSG00000035824	Tk2	AU024611|mt-TK	thymidine kinase 2, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-111818450-1	chr13	111818350	111818550	+	674.666687	f0_balb.idr	Intergenic	Intergenic	-9457.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	0.1004702134204	-0.027989984730788	0.296260918505132	0.26986806179725	-0.0436020284103606	-0.0267622867766213	-0.0322372062722303	0.776339107231437	0.502251612362003	0.812791116710128	1
Merged-chr9-114688698-4	chr9	114688597	114688797	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146229)	promoter-TSS (NM_146229)	-134.0	NM_146229	235661.0	Mm.128627	NM_146229	ENSMUSG00000032435	Dync1li1	1110053F02Rik|Dnclic1|LIC-1	dynein cytoplasmic 1 light intermediate chain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-65880740-3	chr5	65880647	65880847	+	582.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081105, intron 1 of 2)	intron (NM_001081105, intron 1 of 2)	17178.0	NM_001081105	74734.0	Mm.20323	NM_001081105	ENSMUSG00000029204	Rhoh	5830400A04Rik|AU019774|Arhh	ras homolog family member H	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120041054-2	chr11	120040986	120041186	+	1000.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_001198785, intron 1 of 13)	intron (NM_001198785, intron 1 of 13)	695.0	NM_001198787	11302.0	Mm.6826	NM_007377	ENSMUSG00000025375	Aatk	AATYK|aatyk1|mKIAA0641	apoptosis-associated tyrosine kinase	protein-coding	3.53497341902888	3.23336963110643	3.22463893625425	3.38549440355661	3.31501372457865	3.53863295872933	3.04246016364693	3.05450137949682	-0.169201560515954	0.763685980655256	0.998431161219273
Merged-chr2-22777620-1	chr2	22777520	22777720	+	664.5	f0_balb.idr	intron (NM_019456, intron 1 of 13)	intron (NM_019456, intron 1 of 13)	3293.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-145019447-3	chr4	145019310	145019510	+	980.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276465, intron 66 of 69)	intron (NM_001276465, intron 66 of 69)	126273.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-82039390-1	chr6	82039290	82039490	+	553.0	f0_balb.idr	Intergenic	Intergenic	-2238.0	NM_145570	232146.0	Mm.489683	NM_145570	ENSMUSG00000035104	Eva1a	BC014699|Fam176a|Tmem166	eva-1 homolog A (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124488332-2	chr5	124488232	124488432	+	601.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029532, intron 1 of 1)	B2_Mm1t|SINE|B2	5177.0	NM_029532	76167.0	Mm.156035	NM_029532	ENSMUSG00000029402	Snrnp35	6330548G22Rik	small nuclear ribonucleoprotein 35 (U11/U12)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-173702923-3	chr2	173702856	173703056	+	880.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_024436)	TTS (NM_024436)	-1808.0	NR_105758	102465173.0		NR_105758	ENSMUSG00000098588	Mir6340	Gm27909|mmu-mir-6340	microRNA 6340	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-113713703-2	chr6	113713603	113713803	+	622.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3989.0	NR_138135	58991.0	Mm.379095	NM_021488	ENSMUSG00000064177	Ghrl	2210006E23Rik|Ghr|MTLRP|MTLRPAP|m46	ghrelin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-88981816-4	chr5	88981718	88981918	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359211, intron 3 of 26)	intron (NM_001359211, intron 3 of 26)	-46148.0	NM_001359212	54403.0	Mm.41044	NM_018760	ENSMUSG00000060961	Slc4a4	AI835705|NBC|NBC1	solute carrier family 4 (anion exchanger), member 4	protein-coding	3.01296622028132	3.39263745834444	4.1081348885652	2.87637706146439	3.039255362318	3.7462912314855	3.69403340389313	1.60263825635945	-0.296558940888538	0.677857909844595	0.994818437932722
Merged-chr11-44544241-4	chr11	44544165	44544365	+	838.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166553, intron 4 of 5)	RSINE1|SINE|B4	24888.0	NM_001166553	74315.0	Mm.156771	NM_028862	ENSMUSG00000019189	Rnf145	3732413I11Rik|TMRF1	ring finger protein 145	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-40723021-1	chr9	40722921	40723121	+	732.0	f0_balb.idr	intron (NM_133733, intron 1 of 6)	MLT1B|LTR|ERVL-MaLR	37057.0	NM_133733	71566.0	Mm.280560	NM_133733	ENSMUSG00000032024	Clmp	9030425E11Rik|ACAM|ASP5|AW557819	CXADR-like membrane protein	protein-coding	-0.546276050928769	-0.795186648876241	-0.798102479415424	-0.800344513763548	-0.661999284297756	-0.306266070709413	-0.797460321840726	-0.799953319573483	1.28203217374888	0.65085305520108	1
Merged-chr5-31037592-1	chr5	31037492	31037692	+	794.0	f1_c57bl6.idr	intron (NM_001360022, intron 15 of 17)	intron (NM_001360022, intron 15 of 17)	10487.0	NM_177870	330064.0	Mm.205463	NM_177870	ENSMUSG00000006641	Slc5a6	E430023I20	solute carrier family 5 (sodium-dependent vitamin transporter), member 6	protein-coding	-0.879434232553282	-0.863368186228245	-0.870001710421719	0.207470257140781	-0.878548218226478	-0.860017512281834	-0.869002348459762	-0.872902222154427	-3.52577640122347	0.237954581177968	1
Merged-chr12-17259585-1	chr12	17259485	17259685	+	684.0	f0_balb.idr	Intergenic	B4A|SINE|B4	-7010.0	NM_027959	71853.0	Mm.222825	NM_027959	ENSMUSG00000020571	Pdia6	1700015E05Rik|AL023058|C77895|CaBP5|P5|Txndc7	protein disulfide isomerase associated 6	protein-coding	2.22930333832307	3.15795821422357	3.58334298240568	2.75605145638181	3.81688085338249	2.96528021806681	1.561932637077	2.87858010611411	0.0362183259062807	0.963310190097132	0.998431161219273
Merged-chr7-30244672-3	chr7	30244577	30244777	+	741.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152437, intron 22 of 32)	intron (NR_152437, intron 22 of 32)	-7912.0	NM_001289817	381867.0	Mm.483986	NM_001289817	ENSMUSG00000100512	Ovol3	Gm1903|movo3	ovo like zinc finger 3	protein-coding	2.31419181926612	1.98190979556074	1.74580134619666	2.52644034093324	2.75174244161005	1.81482854133324	1.30401971228433	2.35979133573843	0.0227945309280981	0.981324927135042	0.998431161219273
Merged-chr11-69669953-2	chr11	69669853	69670053	+	847.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159375, intron 4 of 10)	intron (NM_001159375, intron 4 of 10)	2470.0	NM_144958	13681.0	Mm.26680	NM_144958	ENSMUSG00000059796	Eif4a1	BM-010|Ddx2a|Eif4	eukaryotic translation initiation factor 4A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-23742461-2	chr13	23742361	23742561	+	957.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	A-rich|Low_complexity|Low_complexity	3060.0	NM_175653	319148.0	Mm.262517	NM_175653	ENSMUSG00000069310	Hist1h3c	H3-143	histone cluster 1, H3c	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-40598550-4	chr8	40598472	40598672	+	871.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040699, intron 3 of 13)	intron (NM_001040699, intron 3 of 13)	36220.0	NM_001040699	54384.0	Mm.294871	NM_019433	ENSMUSG00000039431	Mtmr7	-	myotubularin related protein 7	protein-coding	3.94203649799243	4.10746929913979	2.0601267525966	4.14236666668108	3.76074255243634	4.65096714636867	3.87261691977188	2.76929397469751	0.192685224348336	0.758631057092053	0.998431161219273
Merged-chr1-81555189-2	chr1	81555089	81555289	+	855.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	477782.0	NM_001356397	241134.0	Mm.313904	NM_172849	ENSMUSG00000054976	Nyap2	9430031J16Rik|Jr6|Kiaa1486	neuronal tyrosine-phophorylated phosphoinositide 3-kinase adaptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-92855853-4	chr8	92855745	92855945	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357375, intron 1 of 12)	intron (NM_001357375, intron 1 of 12)	512.0	NM_001357374	270084.0	Mm.21463	NM_173014	ENSMUSG00000033192	Lpcat2	1-AGPAT 11|A330042H22|Aytl1|Aytl1a|lpafat1|lysoPAFAT|lysoPAFAT/LPCAT2	lysophosphatidylcholine acyltransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-95156956-3	chr4	95156855	95157055	+	890.305542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-104733.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-75188673-2	chr14	75188573	75188773	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008879, intron 2 of 16)	intron (NM_008879, intron 2 of 16)	52248.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19005943-2	chr7	19005843	19006043	+	550.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_178757, exon 1 of 1)	exon (NM_178757, exon 1 of 1)	1878.0	NM_178757	272359.0	Mm.274237	NM_178757	ENSMUSG00000044030	Irf2bp1	6330414O09Rik|C530033F24	interferon regulatory factor 2 binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-22555254-2	chr16	22555154	22555354	+	637.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346673, intron 18 of 23)	B3|SINE|B2	-23070.0	NR_106170	102465887.0		NR_106170	ENSMUSG00000099071	Mir8095	Gm27566|mmu-mir-8095	microRNA 8095	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-102224672-2	chr7	102224572	102224772	+	645.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_111938, intron 2 of 4)	intron (NR_111938, intron 2 of 4)	1644.0	NR_111937	233575.0	Mm.302013	NM_145583	ENSMUSG00000030990	Pgap2	1810006G21Rik|C76649|Frag1	post-GPI attachment to proteins 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-73724700-4	chr15	73724602	73724802	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166388)	promoter-TSS (NM_001166388)	-95.0	NM_001357591	19245.0	Mm.390807	NM_008975	ENSMUSG00000059895	Ptp4a3	AV088979|Prl-3|pPtp4a3	protein tyrosine phosphatase 4a3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-84130155-4	chr12	84130057	84130257	+	978.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028821, intron 4 of 7)	ORR1G|LTR|ERVL-MaLR	15829.0	NM_001346528	105000.0	Mm.101525	NM_028821	ENSMUSG00000042523	Dnal1	1700010H15Rik|AW121714|Dnalc1|E330027P08Rik	dynein, axonemal, light chain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-32266372-2	chr19	32266272	32266472	+	639.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001168525, intron 2 of 9)	B4|SINE|B4	-55359.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-86658039-3	chr17	86657942	86658142	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011104)	TTS (NM_011104)	-95822.0	NM_010137	13819.0	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	3.11239442584055	3.64231154151782	2.93485422536881	1.43585922641193	2.71292870595183	3.79710842462498	3.54876120142606	1.44458429257629	0.252367586251013	0.857095972560382	0.998431161219273
Merged-chr17-14921800-3	chr17	14921702	14921902	+	766.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175173, intron 8 of 24)	intron (NM_175173, intron 8 of 24)	21322.0	NM_175173	71682.0	Mm.122698	NM_175173	ENSMUSG00000046991	Wdr27	0610012K18Rik	WD repeat domain 27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-61687896-4	chr14	61687795	61687995	+	942.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5522.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-14293045-1	chr16	14292945	14293145	+	621.0	f0_balb.idr	Intergenic	Intergenic	-1637.0	NM_013607	17880.0	Mm.250705	NM_013607	ENSMUSG00000018830	Myh11	AV071570|SM1|SM2|smMHC	myosin, heavy polypeptide 11, smooth muscle	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-140122947-2	chr7	140122847	140123047	+	630.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-2710.0	NM_001346725	212503.0	Mm.486735	NM_153783	ENSMUSG00000025464	Paox	2410012F02Rik|AI118225|Pao	polyamine oxidase (exo-N4-amino)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-117915144-4	chr4	117915043	117915243	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146152)	promoter-TSS (NM_146152)	-144.0	NM_146152	230673.0	Mm.287810	NM_146152	ENSMUSG00000033365	Ipo13	Imp13|Kap13|Ranbp13	importin 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34648889-2	chr17	34648804	34649004	+	867.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_017406, intron 4 of 17)	intron (NM_017406, intron 4 of 17)	1758.0	NM_017406	12915.0	Mm.4068	NM_017406	ENSMUSG00000015461	Atf6b	AA617266|ATF6beta|Creb-rp|Crebl1	activating transcription factor 6 beta	protein-coding	0.661681602840068	1.049044962319	0.390703543175722	0.38417440321421	0.986237977136659	0.400996928930066	0.392563009444821	1.155691955144	0.680961171507391	0.707988071547003	1
Merged-chr2-152686982-4	chr2	152686889	152687089	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025543)	promoter-TSS (NM_025543)	-159.0	NM_025543	66405.0	Mm.440291	NM_025543	ENSMUSG00000042814	Mcts2	2400002F11Rik|MCT-2	malignant T cell amplified sequence 2	protein-coding	7.09821117592217	6.72246391689051	6.90027847748606	7.05433680653393	4.20750323538615	4.48367829386125	4.25686699293466	3.39810959954431	-3.17203830028151	3.41152078704977e-30	1.53492849011337e-26
Merged-chr5-102010539-4	chr5	102010437	102010637	+	988.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 2 of 66)	MER3|DNA|hAT-Charlie	59384.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-83075862-4	chr13	83075705	83075905	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-377472.0	NR_039537	100628621.0		NR_039537	ENSMUSG00000106655	Mir3961	mmu-mir-3961	microRNA 3961	ncRNA	1.91122432710962	2.18766553268081	2.62176923303527	1.14631016482598	2.0720476220853	1.55439246735402	3.92374884960151	2.04605828334065	1.36146733255721	0.165518715726909	0.630842932430577
Merged-chr4-93520945-4	chr4	93520833	93521033	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-185422.0	NM_026954	69136.0	Mm.171558	NM_026954	ENSMUSG00000054000	Tusc1	2200001D17Rik|TSG-9	tumor suppressor candidate 1	protein-coding	0.0352868221370452	0.527517490730202	0.360922578176011	0.0418858334500288	0.0362671483103149	0.536830665060267	0.368182164786212	0.0425814935333221	0.039951192415677	0.984826267813131	1
Merged-chr2-158121876-6	chr2	158121831	158122031	+	930.611084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009373, intron 10 of 12)	(GA)n|Simple_repeat|Simple_repeat	24461.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-90247831-3	chr5	90247739	90247939	+	788.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198010, intron 27 of 32)	ORR1A2-int|LTR|ERVL-MaLR	-23843.0	NM_001163456	231430.0	Mm.319697	NM_001033310	ENSMUSG00000035505	Cox18	BC038311	cytochrome c oxidase assembly protein 18	protein-coding	1.3893809556854	1.95794556485215	1.64072372698184	2.02906048657014	1.85119158397066	1.70802412750813	1.10042548120459	1.60466430784147	-0.571188985760306	0.6041594085259	0.973799253481432
Merged-chr15-38553637-4	chr15	38553550	38553750	+	982.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045757, intron 2 of 2)	ORR1A4|LTR|ERVL-MaLR	-34384.0	NM_018745	54375.0	Mm.250214	NM_018745	ENSMUSG00000037458	Azin1	1700085L02Rik|AZI|Oazi|Oazin	antizyme inhibitor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-172344850-2	chr2	172344750	172344950	+	681.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025912)	promoter-TSS (NM_025912)	-727.0	NM_025912	67017.0	Mm.30013	NM_025912	ENSMUSG00000027495	Fam210b	2010011I20Rik|AI430961|AV108736	family with sequence similarity 210, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-128785133-4	chr4	128785022	128785222	+	981.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081098, intron 6 of 8)	intron (NM_001081098, intron 6 of 8)	20990.0	NM_001081098	230761.0	Mm.22616	NM_001081098	ENSMUSG00000028799	Zfp362	-	zinc finger protein 362	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-103346284-3	chr4	103346186	103346386	+	787.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025909, intron 7 of 8)	intron (NM_025909, intron 7 of 8)	32440.0	NM_025909	67013.0	Mm.30021	NM_025909	ENSMUSG00000035069	Oma1	2010001O09Rik|MPRP-1|ZMPOMA1	OMA1 zinc metallopeptidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-34652645-4	chr13	34652543	34652743	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_105041)	promoter-TSS (NR_105041)	38.0	NM_025831	66895.0	Mm.28943	NM_025831	ENSMUSG00000021411	Pxdc1	1300014I06Rik	PX domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-120956975-4	chr6	120956856	120957056	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001270475, intron 27 of 31)	intron (NM_001270475, intron 27 of 31)	-1888.0	NR_138099	215458.0	Mm.122399	NR_138099		LOC215458	-	uncharacterized LOC215458	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-84325959-4	chr15	84325796	84325996	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162500)	promoter-TSS (NM_001162500)	-223.0	NM_001162500	64099.0	Mm.251356	NM_022321	ENSMUSG00000022439	Parvg	AI413459	parvin, gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-54657371-2	chr12	54657271	54657471	+	631.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134054)	promoter-TSS (NM_134054)	-799.0	NM_134054	104725.0	Mm.485026	NM_134054	ENSMUSG00000044408	Sptssa	1110002B05Rik|AA407909|AA409588|AU041967|Ssspta	serine palmitoyltransferase, small subunit A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81307054-2	chr10	81306954	81307154	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001293647, intron 5 of 17)	intron (NM_001293647, intron 5 of 17)	-14049.0	NM_027381	70312.0	Mm.87628	NM_027381	ENSMUSG00000034889	Cactin	2510012J08Rik	cactin, spliceosome C complex subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-28623188-4	chr6	28623103	28623303	+	816.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019776, intron 10 of 23)	intron (NM_019776, intron 10 of 23)	142855.0	NM_019776	56463.0	Mm.439987	NM_019776	ENSMUSG00000001424	Snd1	AL033314|Tudor-SN	staphylococcal nuclease and tudor domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132538382-2	chr4	132538282	132538482	+	842.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172400, intron 2 of 8)	intron (NM_172400, intron 2 of 8)	2823.0	NM_172400	68598.0	Mm.29685	NM_172400	ENSMUSG00000054405	Dnajc8	1110021D09Rik|2010009J04Rik|AL024084|AU019262|AU044514	DnaJ heat shock protein family (Hsp40) member C8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-65068725-2	chr1	65068625	65068825	+	779.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4807.0	NM_007775	12966.0	Mm.491115	NM_007775	ENSMUSG00000025952	Crygc	Cryg-5	crystallin, gamma C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-54116447-4	chr6	54116340	54116540	+	941.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163640, intron 1 of 12)	L3|LINE|CR1	76508.0	NM_001163640	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	-0.527048654681829	-0.512911894843416	0.390258066995751	-0.188838956166852	-0.526159644493552	-0.511876601385522	-0.516500818210642	-0.520464711020452	-3.63637364124215	0.168486482224734	1
Merged-chr19-53554621-3	chr19	53554503	53554703	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25285.0	NM_001085390	240672.0	Mm.482424	NM_001085390	ENSMUSG00000034765	Dusp5	Gm337	dual specificity phosphatase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99154860-2	chr7	99154761	99154961	+	996.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026384, intron 7 of 7)	intron (NM_026384, intron 7 of 7)	-13717.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	1.68367417508081	1.9031062237688	2.2762571267886	1.9036153080041	1.41544852883655	1.10493817417341	2.53897132174743	1.05849495826488	-0.643800784511381	0.575685615459008	0.965286201225318
Merged-chr16-55802677-3	chr16	55802566	55802766	+	613.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19472.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-32458575-2	chr12	32458475	32458675	+	622.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	79786.0	NM_001162903	72123.0	Mm.341352	NM_028111	ENSMUSG00000090946	Ccdc71l	2010109K11Rik|AV375874	coiled-coil domain containing 71 like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-83452119-1	chr15	83452019	83452219	+	723.333313	f0_balb.idr	intron (NM_001358643, intron 1 of 9)	intron (NM_001358643, intron 1 of 9)	-4239.0	NM_001358644	23970.0	Mm.23978	NM_011862	ENSMUSG00000016664	Pacsin2	AI197433	protein kinase C and casein kinase substrate in neurons 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-34068086-1	chr15	34067986	34068186	+	920.0	f1_balb.idr	Intergenic	B1_Mur4|SINE|Alu	-14633.0	NM_001357926	67154.0	Mm.130883	NM_026002	ENSMUSG00000022255	Mtdh	2610103J23Rik|3D3|3D3/Lyric|AEG-1|AV353288|D8Bwg1112e|Lyric	metadherin	protein-coding	0.598575150531109	1.42223759999642	0.632782112523941	1.42833242395896	0.601843156966142	0.652256165165867	1.23219139979995	2.02458358380337	0.664140634010004	0.675514961592225	0.99440487726309
Merged-chr4-35170243-2	chr4	35170143	35170343	+	682.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12759.0	NM_178061	214944.0	Mm.32968	NM_178061	ENSMUSG00000073910	Mob3b	8430436F23Rik|A430018A01Rik|Mobkl2b	MOB kinase activator 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-67201993-1	chr18	67201893	67202093	+	775.0	f0_balb.idr	intron (NM_177137, intron 5 of 11)	intron (NM_177137, intron 5 of 11)	-3366.0	NM_024190	67064.0	Mm.73777	NM_024190	ENSMUSG00000109901	Chmp1b	2810405I11Rik|Chmp1b1	charged multivesicular body protein 1B	protein-coding	3.44248766775016	1.89393680839338	1.82827423611894	3.39061907177198	2.61127186684862	2.93895792963124	2.94711708271183	3.4687572085333	0.254613395344835	0.743128709590188	0.998431161219273
Merged-chr17-84072760-2	chr17	84072660	84072860	+	752.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5900.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-31183285-2	chr6	31183185	31183385	+	841.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_110470, intron 1 of 2)	intron (NR_110470, intron 1 of 2)	35189.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-109536945-2	chr8	109536845	109537045	+	730.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019938, intron 16 of 20)	intron (NM_019938, intron 16 of 20)	28916.0	NR_151644	64340.0	Mm.23705	NM_178380	ENSMUSG00000037993	Dhx38	5730550P09Rik|AI325984|AW540902|Ddx38|KIAA0224|Prp16	DEAH (Asp-Glu-Ala-His) box polypeptide 38	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-61707905-3	chr9	61707808	61708008	+	915.0476070000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	206602.0	NM_018853	56040.0	Mm.3158	NM_018853	ENSMUSG00000007892	Rplp1	2410042H16Rik|Arpp1|C430017H15Rik	ribosomal protein, large, P1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-33263906-3	chr15	33263805	33264005	+	933.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176073, intron 3 of 7)	intron (NM_176073, intron 3 of 7)	142034.0	NR_033608	73486.0	Mm.483393	NM_028551	ENSMUSG00000058101	1700084J12Rik	-	ribosomal protein L7-like 1 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119388097-2	chr11	119387997	119388197	+	797.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2375.0	NR_035453	100316690.0		NR_035453	ENSMUSG00000088015	Mir1932	mir-1932|mmu-mir-1932	microRNA 1932	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-97663857-4	chr15	97663750	97663950	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A0|LTR|ERVL-MaLR	41972.0	NM_028003	71919.0	Mm.12255	NM_028003	ENSMUSG00000022466	Rpap3	2310042P20Rik|D15Ertd682e	RNA polymerase II associated protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101902476-2	chr7	101902376	101902576	+	570.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081679, intron 1 of 3)	intron (NM_001081679, intron 1 of 3)	1309.0	NM_001282088	791260.0	Mm.475469	NM_001081679	ENSMUSG00000078630	Tomt	Comt2|F930017I19Rik	transmembrane O-methyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-89882485-2	chr5	89882296	89882496	+	740.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081401, intron 1 of 21)	intron (NM_001081401, intron 1 of 21)	938.0	NM_177872	330119.0	Mm.133062	NM_177872	ENSMUSG00000043635	Adamts3	1100001H14Rik|6330442E02Rik	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 3	protein-coding	1.26763891441686	1.27375816440414	1.08302758678964	1.44237603069627	1.16224121627558	1.54927989044302	1.37914704235217	1.21062872738859	0.258449455998344	0.829713919545053	0.998431161219273
Merged-chr9-120881318-3	chr9	120881200	120881400	+	979.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	33950.0	NR_040742	76402.0	Mm.436588	NR_040742	ENSMUSG00000100146	1700020M21Rik	-	RIKEN cDNA 1700020M21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-74009375-4	chr13	74009278	74009478	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_182839)	promoter-TSS (NM_182839)	-41.0	NM_182839	72948.0	Mm.39752	NM_182839	ENSMUSG00000021573	Tppp	2900041A09Rik|AI849835	tubulin polymerization promoting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-29522586-2	chr6	29522486	29522686	+	944.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4039.0	NM_001311083	27056.0	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-53586096-2	chr17	53585996	53586196	+	663.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001190846, intron 1 of 17)	intron (NM_001190846, intron 1 of 17)	1970.0	NM_001190846	18519.0	Mm.255025	NM_020005	ENSMUSG00000000708	Kat2b	A930006P13Rik|AI461839|AW536563|Pcaf|p/CAF	K(lysine) acetyltransferase 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46811493-4	chr8	46811384	46811584	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152560, intron 5 of 7)	intron (NR_152560, intron 5 of 7)	71739.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-38536908-4	chr16	38536792	38536992	+	885.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153380, intron 6 of 10)	intron (NR_153380, intron 6 of 10)	13364.0	NR_153380	224143.0	Mm.284366	NM_172380	ENSMUSG00000034064	Poglut1	9630046K23Rik|Clp46|Ktelc1|Rumi|wsnp	protein O-glucosyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-43987637-4	chr14	43987528	43987728	+	731.200012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	18790.0	NM_001011876	630952.0		NM_001011876	ENSMUSG00000072598	Ang6	EG630952	angiogenin, ribonuclease A family, member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-65686331-2	chr18	65686231	65686431	+	979.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361052, intron 8 of 8)	intron (NM_001361052, intron 8 of 8)	-11937.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-25715437-3	chr8	25715331	25715531	+	815.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001081269, exon 23 of 23)	3' UTR (NM_001081269, exon 23 of 23)	-4617.0	NR_121642	71910.0	Mm.385055	NM_028000	ENSMUSG00000031570	Plpp5	1810019D05Rik|2310022A04Rik|AW045471|Ppapdc1|Ppapdc1b	phospholipid phosphatase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89393040-4	chr3	89392922	89393122	+	856.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355211)	promoter-TSS (NM_001355211)	356.0	NM_009565	22724.0	Mm.262184	NM_009565	ENSMUSG00000028042	Zbtb7b	Thpok|Zfp67|c-Krox	zinc finger and BTB domain containing 7B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3387054-2	chr19	3386910	3387110	+	897.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1847.0	NM_001039658	17771.0	Mm.209941	NM_010841	ENSMUSG00000024905	Tesmin	Mtl5	testis expressed metallothionein like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-79761481-2	chr10	79761381	79761581	+	584.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_144528, exon 6 of 9)	exon (NM_144528, exon 6 of 9)	5471.0	NM_144528	70294.0	Mm.466670	NM_144528	ENSMUSG00000035890	Rnf126	2610010O19Rik	ring finger protein 126	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94960951-3	chr10	94960851	94961051	+	766.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16373.0	NM_018797	54712.0	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95497843-3	chr3	95497738	95497938	+	692.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009709)	TTS (NM_009709)	-1372.0	NM_007802	13038.0	Mm.272085	NM_007802	ENSMUSG00000028111	Ctsk	AI323530|MMS10-Q|Ms10q|catK	cathepsin K	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171130733-2	chr1	171130633	171130833	+	767.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_025321, intron 5 of 5)	ID_B1|SINE|B4	9072.0	NM_001081275	75472.0	Mm.32760	NM_029301	ENSMUSG00000026649	Cfap126	1700009P17Rik|AV282292|Flattop|Fltp	cilia and flagella associated protein 126	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-53421956-2	chr11	53421856	53422056	+	581.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_153069)	TTS (NM_153069)	1180.0	NM_153069	259301.0	Mm.24283	NM_153069	ENSMUSG00000036216	Leap2	leap-2	liver-expressed antimicrobial peptide 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-89904293-2	chr16	89904193	89904393	+	580.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_009384, intron 3 of 27)	L1MEf|LINE|L1	56534.0	NM_009384	21844.0	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28726786-4	chr7	28726683	28726883	+	936.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310687, intron 2 of 6)	LTR41|LTR|ERVL	9993.0	NM_015796	50760.0	Mm.358659	NM_015796	ENSMUSG00000030598	Fbxo17	Fbg4|Fbx17|Fbxo26	F-box protein 17	protein-coding	3.34007081152249	4.53616497453927	2.04840258237907	4.27961511232911	3.19374213400808	4.65953531504967	3.02282286446369	5.00534085533971	0.526232869960563	0.587021726355097	0.967957151188163
Merged-chr7-100497551-3	chr7	100497449	100497649	+	686.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011671, intron 4 of 7)	intron (NM_011671, intron 4 of 7)	4191.0	NM_011671	22228.0	Mm.171378	NM_011671	ENSMUSG00000033685	Ucp2	Slc25a8|UCP 2|UCPH	uncoupling protein 2 (mitochondrial, proton carrier)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5806974-2	chr17	5806874	5807074	+	731.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7484.0	NR_045080	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-50819617-2	chr15	50819517	50819717	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310485, intron 5 of 7)	intron (NM_001310485, intron 5 of 7)	69432.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-181596163-2	chr2	181596063	181596263	+	699.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172676, exon 5 of 5)	3' UTR (NM_172676, exon 5 of 5)	2984.0	NM_172676	229011.0	Mm.205422	NM_172676	ENSMUSG00000038605	Samd10	D930033N23Rik|E130318E08	sterile alpha motif domain containing 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-61690342-3	chr14	61690244	61690444	+	797.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7971.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-96875903-4	chr10	96875804	96876004	+	943.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-159864.0	NR_045358	75301.0	Mm.108650	NR_045358	ENSMUSG00000111924	4930556N09Rik	-	RIKEN cDNA 4930556N09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-75213271-2	chr10	75213171	75213371	+	728.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145826, intron 1 of 18)	intron (NM_001145826, intron 1 of 18)	881.0	NM_001145826	74392.0	Mm.27716	NM_153406	ENSMUSG00000033444	Specc1l	4930470P14Rik|4932439K10Rik|9530057A13Rik|AI317249|Cytsa|mKIAA0376	sperm antigen with calponin homology and coiled-coil domains 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-88350036-4	chr10	88349945	88350145	+	946.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027878, intron 1 of 6)	intron (NM_027878, intron 1 of 6)	7030.0	NM_027878	71712.0	Mm.35450	NM_027878	ENSMUSG00000020057	Dram1	1200002N14Rik|Dram	DNA-damage regulated autophagy modulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-111670938-2	chr10	111670838	111671038	+	627.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-76665.0	NR_045344	71321.0	Mm.410785	NR_045344	ENSMUSG00000097082	4933440J02Rik	-	RIKEN cDNA 4933440J02 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-45411627-2	chr4	45411527	45411727	+	569.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2861.0	NM_001009949	230125.0	Mm.260210	NM_001009949	ENSMUSG00000045973	Slc25a51	9130208E07Rik|D130005A03Rik|Gm138|Mcart1	solute carrier family 25, member 51	protein-coding	-1.20406370813143	-1.56956373024278	-1.57884638916872	-1.58647144159385	-1.598104728449	-1.56755213932999	-1.57674499865798	-1.58510656085539	-1.70745470802464	0.626337835847419	1
Merged-chr10-123061016-4	chr10	123060913	123061113	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163024, intron 1 of 34)	RMER19B|LTR|ERVK	15492.0	NM_001163024	67074.0	Mm.169924	NM_153395	ENSMUSG00000034602	Mon2	2610528O22Rik|AW495628|Sf21|mKIAA1040	MON2 homolog, regulator of endosome to Golgi trafficking	protein-coding	2.43769781948358	3.15435484088176	2.37810919348412	2.68337503161876	1.88636184021938	3.41401595048896	3.07326087849385	2.58525550710729	0.301584848393868	0.690701513871494	0.996768576110068
Merged-chr19-5496979-2	chr19	5496879	5497079	+	969.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001362042, intron 9 of 11)	intron (NM_001362042, intron 9 of 11)	6524.0	NM_007687	12631.0	Mm.329655	NM_007687	ENSMUSG00000056201	Cfl1	AA959946|Cof	cofilin 1, non-muscle	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-14579796-1	chr8	14579696	14579896	+	564.0	f1_c57bl6.idr	intron (NM_172910, intron 4 of 15)	intron (NM_172910, intron 4 of 15)	-308740.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	0.549446882886617	0.158891566090087	1.06331954943534	0.830147178504293	0.137304455109063	0.1605703089478	0.153063425237621	0.146609772981818	-4.28555416648707	0.0342021673979458	1
Merged-chr2-118562591-4	chr2	118562483	118562683	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12897.0	NM_138313	171543.0	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	4.3073852482023	4.15196561000652	4.08209357820538	3.24445355602294	4.12432936248889	4.57836476301538	3.90970285569081	3.92833037191067	0.208118582986537	0.651361628131893	0.986248966977088
Merged-chr10-75645027-2	chr10	75644927	75645127	+	590.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1019.0	NM_027890	71733.0	Mm.247956	NM_027890	ENSMUSG00000006342	Susd2	1200011D11Rik	sushi domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24740741-2	chr17	24740641	24740841	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013759, intron 3 of 4)	B2_Mm1a|SINE|B2	4148.0	NM_001346668	27361.0	Mm.28212	NM_013759	ENSMUSG00000075705	Msrb1	D17Wsu82e|SELX|SelR|Sepr|Sepx1	methionine sulfoxide reductase B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-75401656-2	chr4	75401556	75401756	+	820.299988	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-123364.0	NM_025849	66928.0	Mm.24332	NM_025849	ENSMUSG00000028398	Dmac1	1700027K24Rik|3110001D03Rik|Tmem261	distal membrane arm assembly complex 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-31241401-4	chr5	31241285	31241485	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_147201, intron 1 of 17)	GC_rich|Low_complexity|Low_complexity	467.0	NM_147201	192292.0	Mm.292040	NM_147201	ENSMUSG00000029148	Nrbp1	B230344L17Rik|Nrbp	nuclear receptor binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-82806852-2	chr15	82806752	82806952	+	985.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC1|LINE|L1	-12607.0	NM_029562	76279.0	Mm.439931	NM_029562	ENSMUSG00000022445	Cyp2d26	1300006E06Rik	cytochrome P450, family 2, subfamily d, polypeptide 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-104602209-2	chr8	104602109	104602309	+	938.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001252628, exon 18 of 18)	exon (NM_001252628, exon 18 of 18)	10741.0	NM_001024606	382051.0	Mm.290750	NM_001024606	ENSMUSG00000048371	Pdp2	4833426J09Rik|Gm1705|mKIAA1348	pyruvate dehyrogenase phosphatase catalytic subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-41595773-4	chr10	41595645	41595845	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358562, intron 30 of 47)	intron (NM_001358562, intron 30 of 47)	27729.0	NR_045341	70538.0	Mm.399807	NR_045341	ENSMUSG00000091370	5730435O14Rik	-	RIKEN cDNA 5730435O14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-104384188-4	chr8	104384091	104384291	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153582, intron 1 of 3)	intron (NM_153582, intron 1 of 3)	11616.0	NM_153582	97487.0	Mm.29658	NM_153582	ENSMUSG00000096188	Cmtm4	Cklfsf4|D19397|Gm9853	CKLF-like MARVEL transmembrane domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95154094-3	chr3	95154032	95154232	+	774.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-6288.0	NR_073550	20360.0	Mm.23662	NM_011351	ENSMUSG00000038777	Sema6c	Semay|mKIAA1869	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-4660090-2	chr7	4659990	4660190	+	562.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001360629)	TTS (NM_001360629)	-1140.0	NM_172894	243819.0	Mm.258670	NM_172894	ENSMUSG00000052296	Ppp6r1	2010309P17Rik|AI836219|B430201G11Rik|D030074N20Rik|Pp6r1|Saps1|mKIAA1115	protein phosphatase 6, regulatory subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-58584352-2	chr7	58584250	58584450	+	651.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	-73852.0	NM_009728	11982.0	Mm.135129	NM_009728	ENSMUSG00000025324	Atp10a	Atp10c|pfatp	ATPase, class V, type 10A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-32556621-4	chr11	32556593	32556793	+	974.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 2 of 18)	intron (NM_009288, intron 2 of 18)	23427.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	2.18507336864632	2.8895638231881	1.50306346434131	2.3140548455214	3.54611752377108	2.65017106702042	3.49013174727765	3.44733372221973	1.88268256188812	0.0111711179169252	0.117670654828338
Merged-chr5-43672331-3	chr5	43672240	43672440	+	992.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359906, intron 4 of 37)	intron (NM_001359906, intron 4 of 37)	9961.0	NM_001359903	231214.0	Mm.44434	NM_172274	ENSMUSG00000039765	Cc2d2a	5730509K17Rik|b2b1035Clo	coiled-coil and C2 domain containing 2A	protein-coding	0.637354960026438	0.690025376077823	1.52947033396576	0.660063568954661	1.28101458809378	0.693729347000963	2.08724986022577	1.48404310723719	1.9541204670639	0.202398898383388	0.688690643947148
Merged-chr2-68864536-2	chr2	68864436	68864636	+	614.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347161, intron 1 of 10)	intron (NM_001347161, intron 1 of 10)	3095.0	NM_001347161	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-57610068-4	chr19	57609997	57610197	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181415)	promoter-TSS (NM_181415)	-937.0	NM_181415	226255.0	Mm.245340	NM_181415	ENSMUSG00000054843	Atrnl1	AI504415|AW555641|Alp|Atrnl|Atrnlp	attractin like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-8716682-6	chr15	8716558	8716758	+	856.511108	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5851.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-18413202-4	chr16	18413113	18413313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007744, intron 1 of 4)	intron (NM_007744, intron 1 of 4)	281.0	NM_001111063	12846.0	Mm.100940	NM_007744	ENSMUSG00000000326	Comt	Comt1|D16Wsu103e|D330014B15Rik	catechol-O-methyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34304450-4	chr17	34304352	34304552	+	978.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1415.0	NM_010382	14969.0	Mm.22564	NM_010382	ENSMUSG00000060586	H2-Eb1	Eb|H-2Eb|H2Eb|Ia-4|Ia4	histocompatibility 2, class II antigen E beta	protein-coding	1.10212359587642	1.7514265067155	1.82872130629223	1.65069226510048	1.70442125656401	2.0309382007965	1.84283669610683	2.00443129100588	0.904635135173987	0.395364209906022	0.882909751294042
Merged-chr10-80087664-4	chr10	80087551	80087751	+	905.8250119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359637, intron 1 of 3)	ID_B1|SINE|B4	-12212.0	NM_001359636	216161.0	Mm.262102	NM_183426	ENSMUSG00000035673	Sbno2	BC019206|F730040C21|Sno|Stno	strawberry notch 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-68787184-2	chr2	68787084	68787284	+	584.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74257.0	NM_172856	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-85152646-4	chr16	85152545	85152745	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198825, intron 1 of 15)	URR1B|DNA|hAT-Charlie	21062.0	NM_001198825	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	4.15272724799696	4.09884880535606	3.5628636706616	4.10410027514568	4.27234626081375	4.38213080559702	3.68310533779635	4.50958850821064	0.331856977180876	0.449342265298459	0.91562644345294
Merged-chr11-120636200-2	chr11	120636100	120636300	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_144795, exon 8 of 8)	3' UTR (NM_144795, exon 8 of 8)	-2653.0	NM_010756	17134.0	Mm.268010	NM_010756	ENSMUSG00000051510	Mafg	AA545192|C630022N07Rik	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein G (avian)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-145338370-1	chr6	145338270	145338470	+	577.0	f1_balb.idr	Intergenic	Intergenic	-49255.0	NR_003625	381827.0	Mm.179075	NM_001001987		1700073E17Rik	-	ribosomal protein L7 pseudogene	pseudo	2.81407808105664	4.04417007733852	1.48821109040213	3.07555685384024	3.49420836038622	1.56514293245315	4.08805775832224	2.65466973947962	0.161822917423057	0.911072581241025	0.998431161219273
Merged-chr13-31506593-2	chr13	31506493	31506693	+	604.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51577.0	NM_008239	15220.0	Mm.44235	NM_008239	ENSMUSG00000038415	Foxq1	HFH-1|Hfh1|Hfh1l|sa	forkhead box Q1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-134416395-3	chr1	134416316	134416516	+	853.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001306069, intron 1 of 7)	intron (NM_001306069, intron 1 of 7)	752.0	NM_001306069	72674.0	Mm.259976	NM_028320	ENSMUSG00000026457	Adipor1	2810031L11Rik|ACDCR1|CGI-45|Paqr1	adiponectin receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-82764067-4	chr10	82763928	82764128	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010914, exon 1 of 8)	5' UTR (NM_010914, exon 1 of 8)	113.0	NM_010914	18045.0	Mm.245998	NM_010914	ENSMUSG00000020248	Nfyb	AA985999|Cbf-A	nuclear transcription factor-Y beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-33158475-4	chr14	33158401	33158601	+	860.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146022, intron 2 of 58)	intron (NM_001146022, intron 2 of 58)	26565.0	NM_001146022	545030.0	Mm.318345	NM_001146022	ENSMUSG00000051506	Wdfy4	Gm18810	WD repeat and FYVE domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10948399-4	chr19	10948325	10948525	+	999.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_023731, exon 1 of 4)	exon (NM_023731, exon 1 of 4)	841.0	NM_023731	108673.0	Mm.294908	NM_023731	ENSMUSG00000024732	Ccdc86	4933411H20Rik|6720480F16Rik|D19Ertd678e	coiled-coil domain containing 86	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-46735805-2	chr9	46735703	46735903	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-177800.0	NR_015605	73040.0	Mm.265384	NR_015605	ENSMUSG00000099696	2900052N01Rik	AU067665	RIKEN cDNA 2900052N01 gene	ncRNA	-0.930827705715312	-0.911723555512999	-0.922254349429052	-0.92545661009902	-0.930024306940492	-0.908568608235052	-0.921343426646148	0.0793975079163189	3.42135586619611	0.266698239593473	1
Merged-chr3-27452542-2	chr3	27452442	27452642	+	608.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356953, intron 22 of 26)	L2|LINE|L2	81191.0	NM_177330	208188.0	Mm.194721	NM_177330	ENSMUSG00000051136	Ghsr	C530020I22Rik|GHRP|GHS-R|Ghsr1a	growth hormone secretagogue receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55862016-2	chr19	55861916	55862116	+	857.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_138565, intron 4 of 15)	intron (NR_138565, intron 4 of 15)	-33305.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-130783929-1	chr2	130783829	130784029	+	859.0	f0_balb.idr	intron (NM_029432, intron 12 of 36)	intron (NM_029432, intron 12 of 36)	20172.0	NR_024097	100043766.0	Mm.447040	NR_024097		Gm14057	-	Ppp1r14c pseudogene	pseudo	1.38348724480899	0.826496047703632	0.809391681027479	1.69092941768072	1.39668356478264	1.28032538892313	0.813203701261815	2.17451349402285	0.94439365203582	0.496384082082304	0.936810436790607
Merged-chr17-6001570-4	chr17	6001470	6001670	+	984.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357667, intron 4 of 24)	intron (NM_001357667, intron 4 of 24)	-6010.0	NM_001290698	20975.0	Mm.236068	NM_011523	ENSMUSG00000023805	Synj2	AI481647|SJ2|mKIAA0348	synaptojanin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35725698-4	chr17	35725577	35725777	+	912.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21078.0	NM_007584	12305.0	Mm.5021	NM_007584	ENSMUSG00000003534	Ddr1	6030432F18|AI323681|CD167a|Cak|Nep|PTK3A	discoidin domain receptor family, member 1	protein-coding	3.58036679638585	4.09465618716596	4.1544169482122	3.91661289769209	4.79012897733672	4.05072199888246	4.90534185117384	3.14446874437768	0.590441834099671	0.232359552366672	0.727518243553062
Merged-chr2-169087442-3	chr2	169087329	169087529	+	871.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	109160.0	NR_040326	75508.0	Mm.271256	NR_040326	ENSMUSG00000086348	1700017J07Rik	-	RIKEN cDNA 1700017J07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-92544025-2	chr6	92543925	92544125	+	664.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081146, intron 2 of 8)	intron (NM_001081146, intron 2 of 8)	-9164.0	NM_001134459	243548.0	Mm.248820	NM_001081146	ENSMUSG00000030020	Prickle2	6230400G14Rik|6720451F06Rik|mpk2	prickle planar cell polarity protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-144214698-4	chr2	144214612	144214812	+	823.520813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25422.0	NR_136884	433481.0	Mm.330630	NR_136884	ENSMUSG00000074758	Gm5535	EG433481	predicted gene 5535	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-125059621-3	chr5	125059535	125059735	+	831.144409	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011424, intron 17 of 46)	intron (NM_011424, intron 17 of 46)	56160.0	NM_028443	73121.0	Mm.296138	NM_028443	ENSMUSG00000037962	Rflna	3110032G18Rik|Fam101a|cfm|cfm2	refilin A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-35050201-4	chr9	35050112	35050312	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009178, intron 9 of 10)	intron (NM_009178, intron 9 of 10)	-66516.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	5.94648357517941	6.47563802745333	7.25926302676343	6.3864908961179	6.09784298846762	6.54651409756122	7.06390403760373	5.72833478123826	-0.164057856598828	0.58441933457154	0.967268722441911
Merged-chr18-35918419-4	chr18	35918317	35918517	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46413.0	NM_001289602	74002.0	Mm.196944	NM_028707	ENSMUSG00000024347	Psd2	6330404E20Rik|AW125584|EFA6C	pleckstrin and Sec7 domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33915233-4	chr16	33915150	33915350	+	985.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 9 of 14)	intron (NM_001145884, intron 9 of 14)	51788.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-24571085-4	chr2	24570972	24571172	+	815.608337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-95473.0	NM_011040	18510.0	Mm.2533	NM_011040	ENSMUSG00000026976	Pax8	Pax-8	paired box 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-16536637-1	chr16	16536537	16536737	+	760.0	f0_balb.idr	intron (NM_001301817, intron 1 of 16)	Lx7|LINE|L1	-9226.0	NM_001301818	224014.0	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-89258337-4	chr6	89258233	89258433	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27392.0	NR_131021	75131.0	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	Gm44205	RIKEN cDNA 4930512J16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-156470511-3	chr1	156470455	156470655	+	854.194458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009230, intron 1 of 15)	intron (NM_009230, intron 1 of 15)	3773.0	NM_009230	20652.0	Mm.28099	NM_009230	ENSMUSG00000026600	Soat1	8430426K15Rik|ACAT-1|AW550831|Acact|ald|hid	sterol O-acyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-36865147-2	chr14	36865047	36865247	+	558.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54388.0	NM_001347503	72972.0	Mm.27621	NM_027045	ENSMUSG00000058690	Ccser2	1700012P13Rik|2900054P12Rik|AI035535|AW108503|Fam190b|Gcap14	coiled-coil serine rich 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46600063-1	chr19	46599963	46600163	+	658.0	f1_balb.idr	intron (NM_146099, intron 1 of 3)	intron (NM_146099, intron 1 of 3)	957.0	NM_146099	226178.0	Mm.329895	NM_146099	ENSMUSG00000047731	Wbp1l	D19Wsu162e|Opal1	WW domain binding protein 1 like	protein-coding	1.08458476585753	0.484505554665368	0.674842947036008	0.466692689888165	1.53923847128535	0.486744831648739	0.993945849752231	0.657579148440204	1.36132679204205	0.411624865504028	1
Merged-chr11-101010226-2	chr11	101010126	101010326	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001243049, intron 1 of 20)	intron (NM_001243049, intron 1 of 20)	774.0	NM_001243051	11975.0	Mm.340818	NM_016920	ENSMUSG00000019302	Atp6v0a1	AA959968|ATP6a1|Atp6n1|Atp6n1a|Atpv0a1|Vpp-1|Vpp1	ATPase, H+ transporting, lysosomal V0 subunit A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-108031468-4	chr5	108031366	108031566	+	976.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-34208.0	NM_001359088	17765.0	Mm.257149	NM_013827	ENSMUSG00000029267	Mtf2	9230112N11Rik|AA537621|C76717|M96|Pcl2	metal response element binding transcription factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71489892-4	chr17	71489815	71490015	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-14572.0	NM_028887	74355.0	Mm.194450	NM_028887	ENSMUSG00000024054	Smchd1	4931400A14Rik|AW554188|MommeD1|mKIAA0650	SMC hinge domain containing 1	protein-coding	3.44801630998227	3.20868856332986	4.51065472417883	2.59025849734887	3.24883335192738	3.64910022131437	4.18805920173676	3.65167211541283	0.126492682008578	0.831609453932531	0.998431161219273
Merged-chr2-128755678-2	chr2	128755578	128755778	+	573.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 6 of 18)	intron (NM_008587, intron 6 of 18)	56763.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	1.22965776655374	0.423311886178214	0.412465175046009	0.403970591874249	1.24505699727623	0.425732584062792	1.40480009273918	0.405462799880979	1.21707520965283	0.515865635613112	0.947402641287243
Merged-chr10-9675490-6	chr10	9675498	9675698	+	862.216675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177271)	promoter-TSS (NM_177271)	-390.0	NM_177271	320825.0	Mm.101115	NM_177271	ENSMUSG00000060487	Samd5	E130306M17Rik	sterile alpha motif domain containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81106187-8	chr10	81106127	81106327	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001347144, exon 1 of 11)	exon (NM_001347144, exon 1 of 11)	312.0	NM_001358539	26396.0	Mm.275436	NM_023138	ENSMUSG00000035027	Map2k2	AA589381|MEK2|MK2|Prkmk2	mitogen-activated protein kinase kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-52925288-4	chr2	52925189	52925389	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	67421.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99249059-1	chr7	99248959	99249159	+	557.0	f1_balb.idr	Intergenic	CpG	-10448.0	NM_177448	233549.0	Mm.208030	NM_177448	ENSMUSG00000052396	Mogat2	DGAT2L5|MGAT2|Mgat1l	monoacylglycerol O-acyltransferase 2	protein-coding	1.68781877697065	0.858704747074651	0.84238878196499	0.829529229829399	1.29354973912317	1.948442649788	1.41172545314184	1.71152937226878	1.7576497607254	0.199887668677008	0.683580694433892
Merged-chr10-122988009-4	chr10	122987940	122988140	+	814.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2316.0	NR_029527	387251.0		NR_029527	ENSMUSG00000065406	Mirlet7i	Mirnlet7i|let-7i|mmu-let-7i	microRNA let7i	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-21333101-4	chr11	21333004	21333204	+	978.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290634, intron 4 of 9)	MIRb|SINE|MIR	11571.0	NR_035454	100316753.0		NR_035454	ENSMUSG00000089555	Mir1933	mir-1933|mmu-mir-1933	microRNA 1933	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-44661718-2	chr18	44661618	44661818	+	572.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_026853)	promoter-TSS (NR_026853)	53.0	NR_026853	626275.0	Mm.427116	NR_026853	ENSMUSG00000097610	A930012L18Rik	-	RIKEN cDNA A930012L18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-26903552-1	chr2	26903452	26903652	+	585.0	f0_balb.idr	promoter-TSS (NM_009298)	promoter-TSS (NM_009298)	-665.0	NM_009298	20935.0	Mm.245577	NM_009298	ENSMUSG00000036160	Surf6	D2Wsu129e|Surf-6	surfeit gene 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-44495607-3	chr10	44495511	44495711	+	920.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36863.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-53220757-2	chr17	53220657	53220857	+	630.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4B|LINE|L1	242564.0	NM_172497	211482.0	Mm.60887	NM_172497	ENSMUSG00000023931	Efhb	4921525D22Rik	EF hand domain family, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-118740163-4	chr7	118740054	118740254	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027815)	promoter-TSS (NM_027815)	-117.0	NM_027815	71517.0	Mm.213298	NM_027815	ENSMUSG00000030982	9030624J02Rik	2610029J22Rik	RIKEN cDNA 9030624J02 gene	protein-coding	0.316511417118417	0.350800367683031	0.737980432069606	0.535984159678882	0.5035237154902	0.353253995915416	1.669703337092	0.857327049813059	2.36941002535907	0.167329216990942	0.633485087165721
Merged-chr14-25832473-4	chr14	25832381	25832581	+	939.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9674.0	NM_013469	11744.0	Mm.294083	NM_013469	ENSMUSG00000021866	Anxa11	A830099O17Rik|Anx11	annexin A11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-27178564-2	chr7	27178464	27178664	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_029391, intron 1 of 7)	intron (NM_029391, intron 1 of 7)	319.0	NM_029391	19342.0	Mm.482114	NM_029391	ENSMUSG00000053291	Rab4b	1500031G17Rik	RAB4B, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-128355910-4	chr6	128355806	128356006	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011657)	promoter-TSS (NM_011657)	-55.0	NM_011657	22158.0	Mm.291783	NM_011657	ENSMUSG00000001521	Tulp3	2310022L06Rik|AI316887	tubby-like protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-103915838-2	chr3	103915738	103915938	+	646.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356557, intron 1 of 6)	intron (NM_001356557, intron 1 of 6)	1718.0	NM_172684	229675.0	Mm.29366	NM_172684	ENSMUSG00000044098	Rsbn1	C230004D03Rik|E330004N01|KDM9|Rosbin|Rsbn|Rsbp|mKIAA3002	rosbin, round spermatid basic protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-100639962-1	chr12	100639862	100640062	+	672.0	f0_balb.idr	intron (NM_153587, intron 3 of 17)	intron (NM_153587, intron 3 of 17)	85158.0	NM_001330702	73086.0	Mm.220417	NM_153587	ENSMUSG00000021180	Rps6ka5	3110005L17Rik|6330404E13Rik|AI854034|MSK1|MSPK1|RLPK|RLSK|S6K-alpha-5	ribosomal protein S6 kinase, polypeptide 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34203589-2	chr17	34203489	34203689	+	630.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011530)	promoter-TSS (NM_011530)	-890.0	NM_011530	21355.0	Mm.14814	NM_011530	ENSMUSG00000024339	Tap2	ABC18|AI462429|APT2|Abcb3|Ham-2|Ham2|MTP2|PSF2|RING11|Tap-2|Y1|jas	transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-73604782-4	chr13	73604674	73604874	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146047, intron 1 of 16)	intron (NM_146047, intron 1 of 16)	772.0	NM_146047	218335.0	Mm.30099	NM_146047	ENSMUSG00000021610	Clptm1l	C130052I12Rik|Crr9	CLPTM1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-192742097-1	chr1	192741997	192742197	+	544.0	f0_c57.idr	intron (NM_144881, intron 3 of 11)	intron (NM_144881, intron 3 of 11)	29122.0	NM_144881	226861.0	Mm.145857	NM_144881	ENSMUSG00000037375	Hhat	2810432O22Rik|AI462858|AP-2CRE|Skn|Tg(TFAP2A-cre)1Will	hedgehog acyltransferase	protein-coding	1.43849253819462	0.691090493673654	0.87423850413304	1.25372593592712	1.45321224711628	0.693504182878651	0.682706946118068	1.26146311897095	-0.110244276002937	0.942873657430478	0.998431161219273
Merged-chr4-137743788-2	chr4	137743688	137743888	+	562.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_007431, exon 10 of 12)	exon (NM_007431, exon 10 of 12)	19327.0	NR_138592	110351.0	Mm.180763	NM_029563	ENSMUSG00000041351	Rap1gap	1300019I11Rik|2310004O14Rik|AI427470|ARPP-90|Gap|Rap1GAP1|Rap1ga1	Rap1 GTPase-activating protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-92430912-4	chr16	92430807	92431007	+	984.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081549, intron 1 of 3)	intron (NM_001081549, intron 1 of 3)	-30829.0	NM_019466	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-76194831-2	chr14	76194731	76194931	+	697.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-56631.0	NR_152108	72893.0	Mm.233565	NR_152108		2900040C04Rik	-	RIKEN cDNA 2900040C04 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122685895-1	chr5	122685795	122685995	+	780.0	f1_balb.idr	intron (NM_001038845, intron 12 of 12)	MTD|LTR|ERVL-MaLR	3298.0	NR_106195	102465902.0		NR_106195	ENSMUSG00000099324	Mir8115	Gm28012|mmu-mir-8115	microRNA 8115	ncRNA	-0.853406117981676	-0.837434974408066	-0.842629652775051	-0.846609343739982	-0.852379387836921	0.235393803476531	-0.841507026044057	-0.845908087167085	4.06860236728252	0.124327625185662	1
Merged-chr3-55627302-4	chr3	55627190	55627390	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030595, intron 57 of 57)	intron (NM_030595, intron 57 of 57)	-155220.0	NM_010750	17116.0	Mm.440209	NM_010750	ENSMUSG00000056947	Mab21l1	AW047968	mab-21-like 1 (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-51900001-4	chr11	51899890	51900090	+	891.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-42360.0	NM_001357588	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19049580-2	chr7	19049480	19049680	+	790.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360713, intron 21 of 22)	intron (NM_001360713, intron 21 of 22)	-5107.0	NM_031255	83434.0	Mm.84435	NM_031255	ENSMUSG00000040866	Rsph6a	RSP4|Rshl1	radial spoke head 6 homolog A (Chlamydomonas)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-58898507-2	chr4	58898407	58898607	+	770.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172381, intron 1 of 48)	intron (NM_172381, intron 1 of 48)	13423.0	NM_001355697	230249.0	Mm.234801	NM_172381	ENSMUSG00000050812	AI314180	AW558785|BB181316|Ecpas|mKIAA0368	expressed sequence AI314180	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-30778940-4	chr10	30778843	30779043	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358842, intron 1 of 14)	Lx7|LINE|L1	24383.0	NM_001358841	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-134120411-4	chr4	134120381	134120581	+	756.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026257, intron 8 of 14)	ID_B1|SINE|B4	8272.0	NM_080559	73723.0	Mm.22240	NM_080559	ENSMUSG00000028843	Sh3bgrl3	1110004L05Rik|AU022188	SH3 domain binding glutamic acid-rich protein-like 3	protein-coding	1.54640064377497	2.29766660840242	2.21799102339421	1.43301099429158	2.39615718450324	1.25908209273546	2.23586123337176	2.2658286119852	0.468701838436725	0.646826067789086	0.984490176318369
Merged-chr10-56107348-4	chr10	56107250	56107450	+	768.825012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163833, intron 1 of 1)	intron (NM_001163833, intron 1 of 1)	433.0	NM_001163833	73390.0	Mm.181475	NM_133751	ENSMUSG00000047669	Msl3l2	1700060H10Rik	MSL3 like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-11907035-1	chr13	11906935	11907135	+	552.0	f0_balb.idr	intron (NM_023868, intron 3 of 104)	intron (NM_023868, intron 3 of 104)	199910.0	NM_023868	20191.0	Mm.239871	NM_023868	ENSMUSG00000021313	Ryr2	9330127I20Rik|RYR-2	ryanodine receptor 2, cardiac	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76766879-3	chr15	76766760	76766960	+	893.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198420, intron 1 of 10)	intron (NM_198420, intron 1 of 10)	-43015.0	NM_176828	223665.0	Mm.291713	NM_145472	ENSMUSG00000116138	C030006K11Rik	1110033I13Rik	RIKEN cDNA C030006K11 gene	protein-coding	0.618764676584223	0.00233861910677446	-0.00294074592357327	0.413037114669802	-0.0127636032054062	0.00352907206992228	-0.00177658115526008	0.526130072865492	-0.976494184899584	0.66643420303789	1
Merged-chr18-75018725-4	chr18	75018623	75018823	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027727)	promoter-TSS (NM_027727)	-49.0	NM_027727	69190.0	Mm.173826	NM_027727	ENSMUSG00000035765	Dym	1810041M12Rik|4933427L07Rik|C030019K18Rik	dymeclin	protein-coding	2.90370742518117	2.89153000720765	3.65854112329146	3.25292583351993	3.75497774891244	3.38986684972076	3.45815859203408	3.64412104417261	0.569898708459894	0.30647586346181	0.806865344318695
Merged-chr15-46243650-2	chr15	46243550	46243750	+	686.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-80935.0	NR_045509	71120.0	Mm.158571	NR_045509	ENSMUSG00000099751	1700022A22Rik	4933413D07Rik	RIKEN cDNA 1700022A22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-74235333-2	chr1	74235233	74235433	+	758.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-1184.0	NM_001357387	76709.0	Mm.337038	NM_029711	ENSMUSG00000006304	Arpc2	2210023N03Rik|34kDa|p34-Arc	actin related protein 2/3 complex, subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-77489002-2	chr11	77488902	77489102	+	922.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172945, intron 1 of 15)	intron (NM_172945, intron 1 of 15)	676.0	NM_172945	268445.0	Mm.39296	NM_172945	ENSMUSG00000037907	Ankrd13b	AW124583|B930093C12Rik	ankyrin repeat domain 13b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128337656-4	chr10	128337547	128337747	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026444)	promoter-TSS (NM_026444)	-80.0	NM_026444	12974.0	Mm.58836	NM_026444	ENSMUSG00000005683	Cs	2610511A05Rik|9030605P22Rik|Ahl4|BB234005|Cis	citrate synthase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-69184984-2	chr10	69184884	69185084	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-23568.0	NM_001252636	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-24298751-2	chr10	24298651	24298851	+	541.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021509, intron 10 of 11)	intron (NM_021509, intron 10 of 11)	75234.0	NM_021509	59012.0	Mm.285934	NM_021509	ENSMUSG00000020000	Moxd1	3230402N08Rik|MNCb-5203	monooxygenase, DBH-like 1	protein-coding	-0.599331871059574	-0.947800116451024	-0.95790711855856	-0.545752331378273	-0.96275671057501	-0.945273172251724	-0.956821167625019	-0.959569917902332	-2.82233379114307	0.363876369831273	1
Merged-chr16-19733122-3	chr16	19733021	19733221	+	771.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26756.0	NM_177356	239739.0	Mm.258059	NM_177356	ENSMUSG00000041247	Lamp3	1200002D17Rik|Cd208|DC-LAMP|DCLAMP|LAMP|TSC403	lysosomal-associated membrane protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-135350365-3	chr6	135350255	135350455	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12576.0	NM_010128	13730.0	Mm.182785	NM_010128	ENSMUSG00000030208	Emp1	I-8-09|TMP	epithelial membrane protein 1	protein-coding	0.89889474751752	1.04397430186414	0.999975621537976	2.30520469837816	2.29116289307449	1.05349920271508	3.49761915593051	3.29090502883321	2.89513736394787	0.19372541955233	0.673301976936277
Merged-chr11-116333492-1	chr11	116333392	116333592	+	759.0	f1_balb.idr	intron (NM_008240, intron 2 of 2)	intron (NM_008240, intron 2 of 2)	1862.0	NM_008240	15223.0	Mm.378938	NM_008240	ENSMUSG00000034227	Foxj1	FKHL-13|HFH-4|Hfh4	forkhead box J1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-80874359-4	chr8	80874259	80874459	+	999.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021356, intron 1 of 9)	intron (NM_021356, intron 1 of 9)	6120.0	NM_021356	14388.0	Mm.277409	NM_021356	ENSMUSG00000031714	Gab1	AA408973|AW107238	growth factor receptor bound protein 2-associated protein 1	protein-coding	3.5558077343582	4.37569365495298	2.66265462594526	4.43976477273216	5.05136569607572	5.12075899521852	4.93474160379929	5.23862328973556	1.46272919244044	0.000680756338143194	0.0142958831010071
Merged-chr11-101912417-2	chr11	101912317	101912517	+	657.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18063.0	NM_010791	17285.0	Mm.3404	NM_010791	ENSMUSG00000001493	Meox1	AI385561|D330041M02Rik|Mox-1|Mox1	mesenchyme homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-9634976-3	chr13	9634880	9635080	+	697.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081426, intron 30 of 36)	intron (NM_001081426, intron 30 of 36)	128830.0	NM_001347471	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16405241-2	chr7	16405141	16405341	+	704.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198631, intron 1 of 13)	intron (NM_198631, intron 1 of 13)	4045.0	NM_198631	330474.0	Mm.333594	NM_198631	ENSMUSG00000059273	Zc3h4	Bwq1|Gm768|Kiaa1064-hp|mKIAA1064	zinc finger CCCH-type containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-88868287-6	chr4	88868115	88868315	+	958.555542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	11986.0	NM_177348	230405.0	Mm.246593	NM_177348	ENSMUSG00000045364	Ifne	Ifn-tau-1|Ifne1|Ifnt1|Infe1	interferon epsilon	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-113549972-2	chr13	113549872	113550072	+	903.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47128.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-60294466-2	chr10	60294366	60294566	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011179, intron 4 of 14)	intron (NM_011179, intron 4 of 14)	10005.0	NM_001146124	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-70451924-2	chr4	70451824	70452024	+	628.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172694, intron 3 of 5)	intron (NM_172694, intron 3 of 5)	-41489.0	NM_145990	214444.0	Mm.370777	NM_145990	ENSMUSG00000039298	Cdk5rap2	2900018K03Rik|an|mKIAA1633	CDK5 regulatory subunit associated protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-61576061-1	chr8	61575961	61576161	+	595.0	f1_balb.idr	intron (NM_001293772, intron 10 of 21)	intron (NM_001293772, intron 10 of 21)	15108.0	NM_001293774	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	1.47090092896704	1.96606422741403	2.42158566221243	1.84273459162292	1.48208786431777	2.44048760073317	1.91293137209835	1.13166500955385	-0.341047461082081	0.748675838738592	0.998431161219273
Merged-chr13-37601502-1	chr13	37601402	37601602	+	569.0	f1_c57bl6.idr	Intergenic	Intergenic	-224536.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0.887443074628737	0.946440560156385	1.76188586790978	2.14869006740262	1.51481799086752	0.950598316350087	1.77741721483436	1.71625247556868	-0.11983639648213	0.928284529578996	0.998431161219273
Merged-chr15-75019686-3	chr15	75019582	75019782	+	648.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-21651.0	NM_010738	110454.0	Mm.425949	NM_010738	ENSMUSG00000075602	Ly6a	Ly-6A.2|Ly-6A/E|Ly-6E.1|Sca-1|Sca1|TAP	lymphocyte antigen 6 complex, locus A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-86990766-4	chr10	86990664	86990864	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138673, intron 3 of 68)	intron (NM_138673, intron 3 of 68)	17178.0	NM_138673	192188.0	Mm.279611	NM_138673	ENSMUSG00000035459	Stab2	FEEL-2|FELL|MFEEL-2|STAB-2	stabilin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-59191907-4	chr11	59191830	59192030	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008193)	promoter-TSS (NM_008193)	22.0	NM_008193	14923.0	Mm.3624	NM_008193	ENSMUSG00000020444	Guk1	AA409738|AL033299|AL033300|AV026611|Gmk|Guk-1	guanylate kinase 1	protein-coding	7.07322417803908	7.16498298481459	7.42773754722604	7.28513808942569	6.06432467750268	6.24346838655035	6.42712127855254	5.89932468174669	-1.14480636769171	1.92153658301566e-09	3.03349946355551e-07
Merged-chr18-73755558-2	chr18	73755458	73755658	+	558.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1079.0	NM_053255	114615.0	Mm.50642	NM_053255	ENSMUSG00000036941	Elac1	2610018O07Rik|8430417G19Rik	elaC ribonuclease Z 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-8092717-4	chr14	8092601	8092801	+	731.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001348727)	TTS (NM_001348727)	-5510.0	NM_145458	218699.0	Mm.29515	NM_145458	ENSMUSG00000033885	Pxk	C230080L11Rik|D14Ertd813e|Monaka|Slob	PX domain containing serine/threonine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-97247964-4	chr15	97247853	97248053	+	831.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164563)	promoter-TSS (NM_001164563)	-666.0	NM_001164602	105827.0	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97510395-2	chr6	97510295	97510495	+	917.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	-22575.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-144933266-4	chr3	144933138	144933338	+	985.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033199)	promoter-TSS (NM_001033199)	-709.0	NM_001033199	99709.0	Mm.440040	NM_001033199	ENSMUSG00000074195	Clca4b	AI747448|Clca7	chloride channel accessory 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-30416060-4	chr16	30415961	30416161	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27531.0	NM_001128096	224088.0	Mm.8924	NM_001128094	ENSMUSG00000022533	Atp13a3	AU022875|Gm1745|Gm541|Gm542	ATPase type 13A3	protein-coding	1.92658570604098	2.41713282805372	2.08690737327228	1.72065878490571	2.06195657990653	1.83639777848812	3.00748578210247	2.03901913989335	0.655827298986949	0.46824100466593	0.924409990887115
Merged-chr7-45013988-2	chr7	45013888	45014088	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001008422, intron 1 of 10)	intron (NM_001008422, intron 1 of 10)	-1501.0	NR_106021	102466218.0		NR_106021	ENSMUSG00000098839	Mir7054	Gm27557|mmu-mir-7054	microRNA 7054	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5690585-2	chr19	5690485	5690685	+	863.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_022012, exon 3 of 12)	exon (NM_022012, exon 3 of 12)	1454.0	NM_022012	26403.0	Mm.185026	NM_022012	ENSMUSG00000004054	Map3k11	2610017K16Rik|Mlk3|PTK1|SPRK	mitogen-activated protein kinase kinase kinase 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-74908504-4	chr7	74908405	74908605	+	993.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-121706.0	NR_131122	75205.0	Mm.399304	NR_131122	ENSMUSG00000108803	4930533N22Rik	Gm44904	RIKEN cDNA 4930533N22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-140912430-4	chr7	140912347	140912547	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6383.0	NR_015583	212965.0	Mm.387212	NR_015583	ENSMUSG00000109628	BC024386	BC039766	cDNA sequence BC023486	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-27378250-3	chr10	27378158	27378358	+	965.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008481, intron 4 of 63)	intron (NM_008481, intron 4 of 63)	-11608.0	NR_131034	75855.0	Mm.402080	NR_131034	ENSMUSG00000101636	4930579H20Rik	-	RIKEN cDNA 4930579H20 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-97914097-4	chr5	97914000	97914200	+	846.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133738, intron 16 of 16)	intron (NM_133738, intron 16 of 16)	116862.0	NM_133738	71914.0	Mm.24842	NM_133738	ENSMUSG00000029338	Antxr2	2310046B19Rik|AW561899|CMG-2|CMG2|cI-35	anthrax toxin receptor 2	protein-coding	3.66230730135809	2.42132798865516	3.51895099055938	2.94097274056172	2.29611679240455	1.81795344457255	1.98843158347614	2.42103498182071	-2.07308159654511	0.00650739076874705	0.0809353916137806
Merged-chr7-35044964-2	chr7	35044864	35045064	+	672.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_008820)	TTS (NM_008820)	11602.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81399961-2	chr10	81399861	81400061	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008688, exon 10 of 10)	3' UTR (NM_008688, exon 10 of 10)	6897.0	NM_001099917	72273.0	Mm.253147	NM_001099917	ENSMUSG00000078439	Smim24	2210404O07Rik	small integral membrane protein 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45468782-2	chr7	45468682	45468882	+	566.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-1884.0	NM_007527	12028.0	Mm.19904	NM_007527	ENSMUSG00000003873	Bax	-	BCL2-associated X protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-32650548-4	chr11	32650448	32650648	+	975.6083369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271349, intron 1 of 11)	intron (NM_001271349, intron 1 of 11)	7993.0	NM_001271347	103583.0	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	3.66681823156359	2.73032283921252	2.62573806728131	4.67985272856035	2.41024807583567	3.70241270286191	3.65863479242246	4.18707221164376	-0.12040588716727	0.85723135566912	0.998431161219273
Merged-chr10-120231889-4	chr10	120231781	120231981	+	946.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_025431, exon 3 of 3)	3' UTR (NM_025431, exon 3 of 3)	4821.0	NM_025431	66225.0	Mm.291755	NM_025431	ENSMUSG00000020224	Llph	1190005P17Rik	LLP homolog, long-term synaptic facilitation (Aplysia)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35359564-2	chr17	35359415	35359615	+	874.2333369999999	f0_balb.idr|f1_balb.idr	Intergenic	CpG	17182.0	NM_010392	15013.0	Mm.427969	NM_010392	ENSMUSG00000091705	H2-Q2	BE136769|Gm11132|H-2Q2|gs14-2	histocompatibility 2, Q region locus 2	protein-coding	2.33395098148069	2.79744170304512	2.69853105086747	4.01115291052248	3.32709844011809	3.08237663835206	3.08795171751695	3.7908149389468	0.343505598779302	0.607286455637664	0.974576632476413
Merged-chr4-75264439-1	chr4	75264339	75264539	+	896.0	f0_balb.idr	Intergenic	Lx8|LINE|L1	13853.0	NM_025849	66928.0	Mm.24332	NM_025849	ENSMUSG00000028398	Dmac1	1700027K24Rik|3110001D03Rik|Tmem261	distal membrane arm assembly complex 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-45060587-4	chr2	45060467	45060667	+	866.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355291, intron 2 of 9)	intron (NM_001355291, intron 2 of 9)	-37390.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-23592685-3	chr16	23592603	23592803	+	833.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17216.0	NM_023386	67775.0	Mm.475107	NM_023386	ENSMUSG00000033355	Rtp4	5830458K16Rik|Ifrg28	receptor transporter protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80090456-2	chr7	80090412	80090612	+	910.5499880000001	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001146000, exon 6 of 6)	3' UTR (NM_001146000, exon 6 of 6)	-15255.0	NR_045695	100859962.0	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-56620346-1	chr18	56620246	56620446	+	662.0	f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	31998.0	NM_026099	67343.0	Mm.87057	NM_026099	ENSMUSG00000032900	Tex43	1700065I17Rik|Tseg7	testis expressed 43	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-11839441-4	chr18	11839315	11839515	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045421)	promoter-TSS (NR_045421)	-38.0	NR_045421	621998.0	Mm.353277	NR_045421		Gm6277	-	predicted gene 6277	ncRNA	3.69138173639323	2.98965733890593	3.71711731580548	2.92525783881174	4.36178609075299	3.51276856771925	4.43912905380379	4.22535049656361	1.1364128187925	0.0257324142910967	0.21360989852254
Merged-chr11-100849257-2	chr11	100849157	100849357	+	583.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113563, intron 1 of 18)	MIR3|SINE|MIR	1328.0	NM_001113563	20851.0	Mm.34064	NM_011489	ENSMUSG00000020919	Stat5b	-	signal transducer and activator of transcription 5B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85608935-2	chr12	85608835	85609035	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205053, intron 2 of 3)	intron (NM_001205053, intron 2 of 3)	8917.0	NM_001205053	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-38350486-2	chr2	38350386	38350586	+	618.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010710)	promoter-TSS (NM_010710)	-822.0	NM_010710	16870.0	Mm.142856	NM_010710	ENSMUSG00000000247	Lhx2	LH2A|Lh-2|Lim2|ap|apterous	LIM homeobox protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-25157389-4	chr12	25157288	25157488	+	976.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28214.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	4.15921778863001	3.61699964606818	3.58431910219771	3.78341959898153	3.74861806614626	4.111691210251	3.84773985852377	3.73351491201345	0.0697056687962853	0.882159135052373	0.998431161219273
Merged-chr12-54655628-4	chr12	54655522	54655722	+	945.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134054, intron 1 of 1)	intron (NM_134054, intron 1 of 1)	950.0	NM_134054	104725.0	Mm.485026	NM_134054	ENSMUSG00000044408	Sptssa	1110002B05Rik|AA407909|AA409588|AU041967|Ssspta	serine palmitoyltransferase, small subunit A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55781884-2	chr14	55781784	55781984	+	735.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_001361604, exon 3 of 26)	exon (NM_001361604, exon 3 of 26)	2188.0	NM_080435	104110.0	Mm.287010	NM_080435	ENSMUSG00000022220	Adcy4	mKIAA4004	adenylate cyclase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-32592706-2	chr11	32592606	32592806	+	624.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 7 of 18)	intron (NM_009288, intron 7 of 18)	-49849.0	NM_001271348	103583.0	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-120691757-3	chr9	120691654	120691854	+	716.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	114423.0	NR_073359	76100.0	Mm.48212	NR_073359	ENSMUSG00000052658	5830454E08Rik	-	RIKEN cDNA 5830454E08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-19004016-1	chr10	19003916	19004116	+	726.0	f1_c57bl6.idr	intron (NM_001166402, intron 6 of 7)	intron (NM_001166402, intron 6 of 7)	7947.0	NM_001166402	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-121564595-4	chr5	121564500	121564700	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18708.0	NM_010765	17165.0	Mm.272206	NM_010765	ENSMUSG00000029454	Mapkapk5	MK5|PRAK	MAP kinase-activated protein kinase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125330760-2	chr6	125330660	125330860	+	556.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011324, intron 1 of 11)	intron (NM_011324, intron 1 of 11)	9420.0	NM_011324	20276.0	Mm.144114	NM_011324	ENSMUSG00000030340	Scnn1a	ENaC|SCNEA|Scnn1|mENaC	sodium channel, nonvoltage-gated 1 alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-72918280-4	chr17	72918193	72918393	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029999)	promoter-TSS (NM_029999)	-12.0	NM_029999	77889.0	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-108640012-4	chr9	108639911	108640111	+	859.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357286, intron 3 of 16)	intron (NM_001357286, intron 3 of 16)	9397.0	NM_011790	23807.0	Mm.290447	NM_011790	ENSMUSG00000064145	Arih2	AI843547|ARI2|TRIAD1|UIP48	ariadne RBR E3 ubiquitin protein ligase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78587475-4	chr15	78587369	78587569	+	997.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5880.0	NR_155437	102640742.0	Mm.253544	NR_155437	ENSMUSG00000116097	Gm36738	-	predicted gene, 36738	ncRNA	-1.13799161856527	-1.11509962161431	-1.12611682695956	-0.600839935108385	-0.990754861597232	-1.11271214725662	-1.12362277315966	-1.13354676675577	-1.63747442377455	0.616904426498488	1
Merged-chr4-8535628-4	chr4	8535529	8535729	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021518)	promoter-TSS (NM_021518)	-15.0	NM_021518	59021.0	Mm.397471	NM_021518	ENSMUSG00000047187	Rab2a	9330148M11Rik|C80220|Rab2	RAB2A, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-71831734-5	chr12	71831637	71831837	+	907.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026102, intron 1 of 25)	CpG	669.0	NM_172464	208846.0	Mm.87417	NM_026102	ENSMUSG00000034574	Daam1	-	dishevelled associated activator of morphogenesis 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-17881491-4	chr17	17881418	17881618	+	730.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013521, intron 1 of 1)	intron (NM_013521, intron 1 of 1)	2421.0	NM_013521	14293.0	Mm.56951	NM_013521	ENSMUSG00000045551	Fpr1	FPR|LXA4R|fMLF-R	formyl peptide receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-59676962-4	chr13	59676798	59676998	+	880.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-1114.0	NM_027307	105348.0	Mm.171335	NM_027307	ENSMUSG00000021556	Golm1	2310001L02Rik|AW125446|D030064E01Rik|GP73|Golph2|PSEC0257	golgi membrane protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-85328547-4	chr9	85328455	85328655	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1405.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-58888999-4	chr15	58888885	58889085	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175226)	promoter-TSS (NM_175226)	-244.0	NM_175226	75841.0	Mm.4537	NM_175226	ENSMUSG00000037075	Rnf139	4930555P18Rik	ring finger protein 139	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120634948-2	chr11	120634848	120635048	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_144795)	TTS (NM_144795)	-1401.0	NM_010756	17134.0	Mm.268010	NM_010756	ENSMUSG00000051510	Mafg	AA545192|C630022N07Rik	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein G (avian)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-178463845-4	chr1	178463709	178463909	+	886.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026626, intron 3 of 6)	ERV3-16A3_I-int|LTR|ERVL	57791.0	NM_026626	68226.0	Mm.252132	NM_026626	ENSMUSG00000026495	Efcab2	1700073K01Rik|D830011E08Rik	EF-hand calcium binding domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-109017332-4	chr9	109017230	109017430	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153430, intron 9 of 13)	intron (NR_153430, intron 9 of 13)	-21237.0	NM_001284332	66940.0	Mm.196533	NM_025858	ENSMUSG00000025647	Shisa5	2310008D10Rik|6430628I05Rik|Scotin|mShisa5	shisa family member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-40267194-2	chr18	40267094	40267294	+	564.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026135, intron 1 of 1)	intron (NM_026135, intron 1 of 1)	8833.0	NM_026135	383348.0	Mm.76366	NM_026135	ENSMUSG00000051401	Kctd16	4930434H12Rik|Gm1267	potassium channel tetramerisation domain containing 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-6778446-4	chr17	6778339	6778539	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009510, intron 1 of 12)	intron (NM_009510, intron 1 of 12)	4341.0	NM_009510	22350.0	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33746318-2	chr16	33746218	33746418	+	829.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_175256, intron 10 of 14)	intron (NM_175256, intron 10 of 14)	-47719.0	NM_010739	17063.0	Mm.3177	NM_010739	ENSMUSG00000022824	Muc13	114/A10|14/A10|AI159736|Lrrp|Ly64|NJ-1	mucin 13, epithelial transmembrane	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26113320-4	chr17	26113215	26113415	+	995.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021793)	promoter-TSS (NM_021793)	-1.0	NM_021793	60455.0	Mm.304656	NM_021793	ENSMUSG00000024180	Tmem8	AW490096|GPI-PLA2|M83|Pgap6|Tmem8a	transmembrane protein 8 (five membrane-spanning domains)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-136249944-2	chr4	136249844	136250044	+	854.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011542, intron 1 of 10)	intron (NM_011542, intron 1 of 10)	1987.0	NM_011542	21401.0	Mm.112	NM_011542	ENSMUSG00000001604	Tcea3	S-II|SII-K1	transcription elongation factor A (SII), 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-64092750-4	chr15	64092644	64092844	+	921.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 27 of 28)	intron (NM_001276461, intron 27 of 28)	-32296.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0.385802106936757	1.19726130412394	0.404864161190528	1.18244721611791	0.387589911989836	0.811707305466806	0.406888129137668	0.874619198931444	-1.13101773915825	0.531395019980337	1
Merged-chr2-165319702-4	chr2	165319574	165319774	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080287, intron 1 of 20)	intron (NM_080287, intron 1 of 20)	1152.0	NM_001302752	140579.0	Mm.35064	NM_080287	ENSMUSG00000017670	Elmo2	1190002F24Rik|CED-12	engulfment and cell motility 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-4705313-3	chr7	4705204	4705404	+	816.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001168572, exon 10 of 10)	3' UTR (NM_001168572, exon 10 of 10)	14376.0	NM_001168572	381979.0	Mm.297064	NM_001003920	ENSMUSG00000035390	Brsk1	Gm1100|SAD-B|SADB	BR serine/threonine kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-9910746-2	chr19	9910646	9910846	+	750.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTRIS_Mus|LTR|ERV1	-11213.0	NM_016692	16319.0	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-121835544-4	chr5	121835405	121835605	+	979.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001306127, intron 1 of 8)	intron (NM_001306127, intron 1 of 8)	599.0	NM_001306126	16923.0	Mm.65493	NM_008507	ENSMUSG00000042594	Sh2b3	AI429800|Lnk	SH2B adaptor protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-165682161-4	chr1	165682039	165682239	+	935.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038846, intron 1 of 5)	intron (NM_001038846, intron 1 of 5)	25955.0	NM_001038846	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-27339136-2	chr14	27339036	27339236	+	719.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289687, intron 1 of 9)	intron (NM_001289687, intron 1 of 9)	3099.0	NM_001289687	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-101818731-2	chr12	101818633	101818833	+	803.541626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361987)	promoter-TSS (NM_001361987)	-249.0	NM_001361987	23876.0	Mm.288381	NM_011812	ENSMUSG00000021186	Fbln5	A55|DANCE|EVEC	fibulin 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115658863-4	chr11	115658874	115659074	+	820.363647	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001313936, intron 2 of 5)	intron (NM_001313936, intron 2 of 5)	-30679.0	NM_001252395	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-144716060-4	chr3	144715944	144716144	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001282037, intron 1 of 10)	intron (NM_001282037, intron 1 of 10)	4291.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-56446849-2	chr18	56446749	56446949	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026240, intron 1 of 13)	B2_Mm2|SINE|B2	14717.0	NM_026240	107022.0	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|Gramd2b|NS3TP2	GRAM domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-34490404-2	chr19	34490304	34490504	+	572.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-15269.0	NM_009890	12642.0	Mm.30824	NM_009890	ENSMUSG00000050370	Ch25h	AI462618|m25OH	cholesterol 25-hydroxylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-12171882-2	chr18	12171782	12171982	+	928.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029623, intron 3 of 19)	B1_Mus1|SINE|Alu	3152.0	NM_029623	76482.0	Mm.196596	NM_029623	ENSMUSG00000024410	3110002H16Rik	2400010D15Rik|Mic-1|Mic1|Rmc1|Wdr98	RIKEN cDNA 3110002H16 gene	protein-coding	-1.5061220274826	-1.47360709383584	-1.48343987814663	-1.49151681994238	-1.50383953926072	-1.47147628845725	-1.0170701920923	-1.49007105122263	2.15652851593596	0.535359572134045	1
Merged-chr2-155821808-2	chr2	155821708	155821908	+	546.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010579, intron 5 of 5)	intron (NM_010579, intron 5 of 5)	-2605.0	NR_015528	613262.0	Mm.330707	NR_015528	ENSMUSG00000074649	BC029722	-	cDNA sequence BC029722	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-21935665-4	chr3	21935548	21935748	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-141004.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-20000525-2	chr10	20000425	20000625	+	615.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008580, intron 1 of 29)	intron (NM_008580, intron 1 of 29)	65999.0	NM_008580	26408.0	Mm.6595	NM_008580	ENSMUSG00000071369	Map3k5	7420452D20Rik|ASK|ASK1|MAPKKK5|Mekk5	mitogen-activated protein kinase kinase kinase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-44989267-4	chr16	44989159	44989359	+	751.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45581.0	NM_001128132	74603.0	Mm.297337	NM_027578	ENSMUSG00000036172	Cd200r3	4733401I18Rik|4833409J19Rik|AI505817|BB106877|mCD200RLb	CD200 receptor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-57859782-4	chr6	57859648	57859848	+	888.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15291.0	NM_134183	171201.0	Mm.377179	NM_134183	ENSMUSG00000115343	Vmn1r21	V1rc28	vomeronasal 1 receptor 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-59475789-4	chr1	59475679	59475879	+	915.7333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6368.0	NM_008057	14369.0	Mm.297906	NM_008057	ENSMUSG00000041075	Fzd7	Fz7	frizzled class receptor 7	protein-coding	2.20425889913963	1.14696105997653	1.40214620844781	3.41476063581654	2.22559011295985	1.47052308487657	1.11505907442452	3.19052837493004	-0.221473790081818	0.843767655370685	0.998431161219273
Merged-chr15-101237032-3	chr15	101236929	101237129	+	884.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11843.0	NR_045328	380977.0	Mm.399924	NR_045326	ENSMUSG00000097915	A330009N23Rik	-	RIKEN cDNA A330009N23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-143146971-4	chr6	143146865	143147065	+	990.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153819, intron 5 of 8)	intron (NR_153819, intron 5 of 8)	6966.0	NR_153819	102633311.0	Mm.333484	NR_153819		Gm31108	Gm31169	predicted gene, 31108	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5940334-2	chr17	5940234	5940434	+	974.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113353)	promoter-TSS (NM_001113353)	-946.0	NM_001113353	20975.0	Mm.236068	NM_011523	ENSMUSG00000023805	Synj2	AI481647|SJ2|mKIAA0348	synaptojanin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3996542-2	chr19	3996442	3996642	+	890.7999880000001	f1_balb.idr|f1_c57bl6.idr	exon (NM_001001320, exon 2 of 8)	exon (NM_001001320, exon 2 of 8)	3790.0	NM_011533	109575.0	Mm.246555	NM_011533	ENSMUSG00000037477	Tbx10	Dc|Tbx13|Tbx7	T-box 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76870913-2	chr15	76870813	76871013	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001007568, exon 1 of 4)	5' UTR (NM_001007568, exon 1 of 4)	522.0	NM_001007568	71591.0	Mm.38195	NM_001007568	ENSMUSG00000022526	Zfp251	9130001M19Rik|AV339307	zinc finger protein 251	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-100231706-2	chr15	100231606	100231806	+	756.099976	f1_balb.idr|f1_c57bl6.idr	intron (NM_007497, intron 1 of 6)	intron (NM_007497, intron 1 of 6)	3847.0	NM_007497	11908.0	Mm.676	NM_007497	ENSMUSG00000023027	Atf1	-	activating transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-40310091-3	chr12	40309987	40310187	+	973.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16_Mm|LTR|ERVK	86723.0	NR_045157	629820.0	Mm.435540	NR_045157	ENSMUSG00000035983	Gm7008	EG629820	predicted gene 7008	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10306370-2	chr19	10306270	10306470	+	867.375	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1493.0	NM_198114	269060.0	Mm.329718	NM_198114	ENSMUSG00000035735	Dagla	Nsddr	diacylglycerol lipase, alpha	protein-coding	-0.0960636230207794	0.25123902515276	-0.172940680526671	-0.345461923716099	-0.349670173286567	-0.148614237334281	-0.341617961068129	-0.344940506909184	-2.57964419228241	0.270763517102253	1
Merged-chr3-52262659-4	chr3	52262534	52262734	+	824.325012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5703.0	NM_019739	56458.0	Mm.29891	NM_019739	ENSMUSG00000044167	Foxo1	AI876417|Afxh|FKHR|Fkhr1|Foxo1a	forkhead box O1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-16128928-4	chr19	16128822	16129022	+	979.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3909.0	NM_008139	14682.0	Mm.439701	NM_008139	ENSMUSG00000024639	Gnaq	1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI	guanine nucleotide binding protein, alpha q polypeptide	protein-coding	3.91284940809025	3.94432700877383	4.4075572341922	4.44035858573627	4.51353507596835	4.68541659437302	5.09737195414299	4.41338579480183	0.641961259187284	0.10253737841464	0.498460377995516
Merged-chr13-93898734-3	chr13	93898633	93898833	+	909.2666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009712, intron 6 of 7)	intron (NM_009712, intron 6 of 7)	107956.0	NR_049198	100885837.0		NR_049198	ENSMUSG00000093480	Mir5624	Gm25075|mir-5624|mmu-mir-5624	microRNA 5624	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117395268-2	chr8	117395168	117395368	+	597.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028941, intron 3 of 20)	intron (NM_028941, intron 3 of 20)	46098.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-29172245-2	chr11	29172181	29172381	+	942.5	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_134034)	promoter-TSS (NM_134034)	-626.0	NM_134034	104570.0	Mm.276386	NM_134034	ENSMUSG00000020463	Ppp4r3b	AW011752|AW557776|Smek2|mKIAA1387	protein phosphatase 4 regulatory subunit 3B	protein-coding	1.52595776581245	2.3912814308284	1.20181450177226	2.02785442826421	2.13922644237568	2.40973524858576	2.32611175461101	1.41712586575975	0.653101274714469	0.527715230403987	0.948961270024856
Merged-chr15-25531114-4	chr15	25531008	25531208	+	994.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-91442.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-91269170-3	chr1	91269067	91269267	+	596.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355764, intron 5 of 10)	intron (NM_001355764, intron 5 of 10)	18601.0	NM_001355764	67921.0	Mm.337238	NM_026454	ENSMUSG00000034343	Ube2f	2510010F15Rik|AI851109	ubiquitin-conjugating enzyme E2F (putative)	protein-coding	2.09931165914059	1.36483078284546	1.07861715916355	2.64626291219738	2.11831840670004	1.37399455792402	1.08415643645638	2.23517430257626	-0.418258620717462	0.724350148399528	0.998431161219273
Merged-chr11-63134772-2	chr11	63134672	63134872	+	727.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001302255, intron 3 of 4)	intron (NM_001302255, intron 3 of 4)	1969.0	NM_001302260	18858.0	Mm.1237	NM_008885	ENSMUSG00000018217	Pmp22	22kDa|Gas-3|HNPP|TRE002|Tr|trembler	peripheral myelin protein 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53010721-2	chr4	53010616	53010816	+	754.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-1164.0	NM_001347099	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	1.13062002082616	2.08983753947658	0.824349849160802	1.33887451197587	1.50223795588983	1.08547138303495	0.827944083157302	1.59059733121671	-0.533394058100309	0.688697892330841	0.996533206832645
Merged-chr5-45450388-4	chr5	45450305	45450505	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024236)	promoter-TSS (NM_024236)	-176.0	NM_024236	110391.0	Mm.30204	NM_024236	ENSMUSG00000015806	Qdpr	2610008L04Rik|D5Ertd371e|Dhpr|PKU2	quinoid dihydropteridine reductase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-87885747-4	chr3	87885643	87885843	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033573)	promoter-TSS (NM_033573)	-181.0	NM_033573	94315.0	Mm.35089	NM_033573	ENSMUSG00000004895	Prcc	-	papillary renal cell carcinoma (translocation-associated)	protein-coding	5.02514049640916	4.91221523672581	5.84110445436213	4.54712922055424	3.92595818295048	4.02647504815357	5.07267577016508	4.615171580254	-0.822510979936643	0.0450507907554362	0.305263208292765
Merged-chr17-84408892-4	chr17	84408773	84408973	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183021, intron 22 of 37)	intron (NM_183021, intron 22 of 37)	57335.0	NM_183021	240174.0	Mm.246767	NM_177826	ENSMUSG00000024251	Thada	6530405K19|A930021O22|AU019899|BC052885|GITA	thyroid adenoma associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-118130194-2	chr10	118130094	118130294	+	622.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT2E|LTR|ERVL	-11593.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-142456916-2	chr5	142456816	142457016	+	617.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_199068, exon 9 of 9)	3' UTR (NM_199068, exon 9 of 9)	-7015.0	NM_172725	231855.0	Mm.78250	NM_172725	ENSMUSG00000039623	Ap5z1	C330006K01Rik	adaptor-related protein complex 5, zeta 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-36634745-2	chr16	36634645	36634845	+	765.799988	f1_balb.idr|f1_c57bl6.idr	intron (NM_019388, intron 1 of 7)	intron (NM_019388, intron 1 of 7)	31332.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-60327095-2	chr2	60326995	60327195	+	851.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_013825, intron 23 of 34)	MER57C2|LTR|ERV1	-42611.0	NM_001290660	66205.0	Mm.227281	NM_025422	ENSMUSG00000060703	Cd302	1110055L24Rik|AI159627	CD302 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-89025247-2	chr11	89025147	89025347	+	940.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	25844.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	2.57720616819422	2.91079708750956	2.70014076646121	1.37287435313489	3.1367421789752	2.82128140111556	3.6300934019805	1.38011547559871	0.842566859378042	0.352351068502833	0.852434760027623
Merged-chr15-79391722-1	chr15	79391622	79391822	+	554.0	f1_c57bl6.idr	intron (NM_172608, intron 1 of 8)	intron (NM_172608, intron 1 of 8)	11197.0	NM_001253817	223693.0	Mm.323358	NM_172608	ENSMUSG00000009035	Tmem184b	2610507A11|4732495E13Rik	transmembrane protein 184b	protein-coding	0.469661981958587	0.956311293113858	0.793915679418939	0.199828237629889	0.19227117631023	0.213577473213122	0.55193722189807	0.200759891706158	-2.44635443956318	0.219583988906819	1
Merged-chr5-139334362-2	chr5	139334262	139334462	+	596.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-8898.0	NM_172723	231821.0	Mm.297819	NM_172723	ENSMUSG00000056413	Adap1	4930431P11Rik|Centa1|GC1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52223892-2	chr13	52223792	52223992	+	557.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	127151.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-80885635-4	chr13	80885542	80885742	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_153411)	promoter-TSS (NR_153411)	-453.0	NR_153411	105171.0	Mm.423137	NM_001042591	ENSMUSG00000074794	Arrdc3	AI450344|mKIAA1376	arrestin domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-59557382-4	chr13	59557287	59557487	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001284218)	promoter-TSS (NM_001284218)	-40.0	NM_023328	67269.0	Mm.153008	NM_023328	ENSMUSG00000021557	Agtpbp1	1700020N17Rik|2310001G17Rik|2900054O13Rik|4930445M19Rik|5730402G09Rik|CCP1|Nna1|nmf243|pcd	ATP/GTP binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-66899890-4	chr15	66899807	66900007	+	731.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018865, intron 1 of 4)	intron (NM_018865, intron 1 of 4)	8514.0	NM_018865	22402.0	Mm.10222	NM_018865	ENSMUSG00000005124	Wisp1	AW146261|CCN4|Elm1	WNT1 inducible signaling pathway protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-13948383-1	chr10	13948283	13948483	+	588.5	f0_balb.idr	Intergenic	Intergenic	-17692.0	NM_001358783	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47694925-4	chr17	47694847	47695047	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290337)	promoter-TSS (NM_001290337)	-211.0	NM_001290337	381104.0	Mm.392206	NM_001290337	ENSMUSG00000096549	Prickle4	Gm939	prickle planar cell polarity protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-24105925-2	chr7	24105825	24106025	+	547.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001045486, exon 5 of 5)	exon (NM_001045486, exon 5 of 5)	-6395.0	NM_021307	57745.0	Mm.82678	NM_021307	ENSMUSG00000052675	Zfp112	Znf112|Znf228	zinc finger protein 112	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-122310388-4	chr7	122310293	122310493	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316672, intron 2 of 16)	intron (NM_001316672, intron 2 of 16)	21268.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4865335-3	chr19	4865221	4865421	+	799.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013456, exon 12 of 21)	exon (NM_013456, exon 12 of 21)	10192.0	NM_019861	56464.0	Mm.29561	NM_019861	ENSMUSG00000083282	Ctsf	AI481912	cathepsin F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-98953830-4	chr7	98953720	98953920	+	910.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 12 of 14)	intron (NM_178635, intron 12 of 14)	114975.0	NM_001285795	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-147449272-2	chr4	147449172	147449372	+	546.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039209, intron 1 of 2)	intron (NM_001039209, intron 1 of 2)	-104005.0	NM_001014397	433804.0	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154	zinc finger protein 985	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-49859419-2	chr11	49859319	49859519	+	805.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016961, intron 2 of 11)	L1MEg|LINE|L1	12668.0	NM_016961	26420.0	Mm.68933	NM_016961	ENSMUSG00000020366	Mapk9	AI851083|JNK2|Prkm9|p54aSAPK	mitogen-activated protein kinase 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-101628441-2	chr2	101628339	101628539	+	840.5	f0_c57.idr|f1_c57bl6.idr	intron (NM_009020, intron 2 of 2)	intron (NM_009020, intron 2 of 2)	547.0	NM_026592	68170.0	Mm.31263	NM_026592	ENSMUSG00000027165	B230118H07Rik	NWC	RIKEN cDNA B230118H07 gene	protein-coding	0.708017671773084	0.980075796826085	1.32633966079646	1.61918102668347	0.538843095448525	0.574826271748809	0.56331125584398	1.05332353197002	-2.51857476062253	0.11938880341855	0.541765076934855
Merged-chr12-59133209-2	chr12	59133109	59133309	+	948.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001165253, intron 1 of 22)	B3A|SINE|B2	1756.0	NM_001165253	338320.0	Mm.213215	NM_146034	ENSMUSG00000021000	Mia2	Ctage5|D12Bwg0579e|Mea6|Mgea|Mgea6	melanoma inhibitory activity 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-111892491-2	chr8	111892391	111892591	+	982.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019950, intron 1 of 1)	intron (NM_019950, intron 1 of 1)	-15816.0	NM_025781	66817.0	Mm.345350	NM_025781	ENSMUSG00000031953	Tmem170	9030409E16Rik|AA403674|D8Bwg1414e|Tmem170a	transmembrane protein 170	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28694889-4	chr17	28694782	28694982	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168514, intron 2 of 12)	intron (NM_001168514, intron 2 of 12)	2314.0	NM_001357724	26416.0	Mm.311337	NM_011951	ENSMUSG00000053436	Mapk14	CSBP2|Crk1|Csbp1|Mxi2|PRKM14|PRKM15|p38|p38-alpha|p38MAPK|p38a|p38alpha	mitogen-activated protein kinase 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-4218163-4	chr11	4218063	4218263	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028022)	promoter-TSS (NM_028022)	-88.0	NM_028022	71962.0	Mm.7852	NM_028022	ENSMUSG00000020424	Gatsl3	2410008K03Rik|Castor1	GATS protein-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-93882678-2	chr16	93882578	93882778	+	716.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1223.0	NM_028083	110749.0	Mm.274222	NM_028083	ENSMUSG00000022945	Chaf1b	2600017H24Rik|C76145|CAF-I p60|CAF-Ip60|CAF1|CAF1A|CAF1P60|MPHOSPH7	chromatin assembly factor 1, subunit B (p60)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81553469-2	chr10	81553363	81553563	+	634.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-5981.0	NR_074087	14797.0	Mm.180013	NM_010347	ENSMUSG00000054452	Aes	AL024115|Esp1|Grg|Grg-5|Grg5|Tle5	amino-terminal enhancer of split	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-96614319-2	chr10	96614219	96614419	+	596.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28|LTR|ERVL	-2682.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126758089-4	chr8	126758015	126758215	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-90905.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-58214872-4	chr13	58214786	58214986	+	912.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026842, intron 1 of 10)	intron (NM_026842, intron 1 of 10)	767.0	NM_152234	56085.0	Mm.182053	NM_026842	ENSMUSG00000005312	Ubqln1	1110046H03Rik|1810030E05Rik|AU019746|C77538|D13Ertd372e|Da41|Dsk2|Plic-1|Plic1|Xdrp1	ubiquilin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-118868613-2	chr10	118868500	118868700	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_001014390, intron 1 of 2)	CpG-1533	303.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-49393566-2	chr2	49393463	49393663	+	564.166626	f0_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	-57923.0	NM_172663	227867.0	Mm.29167	NM_172663	ENSMUSG00000069495	Epc2	5830499L14|D2Ertd694e	enhancer of polycomb homolog 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-49424997-4	chr2	49424905	49425105	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26481.0	NM_172663	227867.0	Mm.29167	NM_172663	ENSMUSG00000069495	Epc2	5830499L14|D2Ertd694e	enhancer of polycomb homolog 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127822849-2	chr7	127822749	127822949	+	640.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_024414, intron 1 of 9)	MIRb|SINE|MIR	1682.0	NM_024414	56216.0	Mm.439759	NM_024414	ENSMUSG00000030806	Stx1b	Stx1b2|Stx1bl|Syn1b	syntaxin 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55834980-3	chr19	55834866	55835066	+	814.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_138565, intron 4 of 15)	intron (NR_138565, intron 4 of 15)	-60355.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-40666025-4	chr19	40665933	40666133	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009848, intron 1 of 9)	intron (NM_009848, intron 1 of 9)	6263.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-190927945-4	chr1	190927845	190928045	+	972.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357131)	promoter-TSS (NM_001357131)	-545.0	NM_001357132	52477.0	Mm.289914	NM_021421	ENSMUSG00000026634	Angel2	2610307I21Rik|5730410O10Rik|AI845692|D1Ertd396e|D1Ertd654e	angel homolog 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-64061340-4	chr7	64061260	64061460	+	948.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-92475.0	NM_001039104	17364.0	Mm.38875	NM_018752	ENSMUSG00000030523	Trpm1	4732499L03Rik|AI606771|Ltrpc1|Mlsn1	transient receptor potential cation channel, subfamily M, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-101600051-1	chr3	101599951	101600151	+	860.0	f0_c57.idr	intron (NM_144900, intron 1 of 22)	intron (NM_144900, intron 1 of 22)	4656.0	NM_144900	11928.0	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-11137645-2	chr16	11137545	11137745	+	659.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_027502, intron 22 of 22)	ID4|SINE|ID	-3113.0	NM_029582	106200.0	Mm.291015	NM_029582	ENSMUSG00000022498	Txndc11	2810408E11Rik|AI427833|EFP1|Txdc11	thioredoxin domain containing 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-104227690-3	chr3	104227579	104227779	+	649.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER21B|LTR|ERVL	-7273.0	NM_001159354	99470.0	Mm.264849	NM_133853	ENSMUSG00000052539	Magi3	4732496O19Rik|6530407C02Rik|AA407180|AI120132|mKIAA1634	membrane associated guanylate kinase, WW and PDZ domain containing 3	protein-coding	0.07669826793057	-0.448606549081051	-0.0157125183272182	-0.454951805685537	-0.319581166684286	-0.447795876093512	-0.451404011782398	-0.454470653129283	-2.5446140795988	0.323598907692036	1
Merged-chr5-78781001-2	chr5	78780901	78781101	+	627.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	1315513.0	NR_131050	69370.0	Mm.426881	NR_131050	ENSMUSG00000107232	1700017L05Rik	-	RIKEN cDNA 1700017L05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-74497401-4	chr7	74497284	74497484	+	979.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038643, intron 2 of 10)	ORR1E|LTR|ERVL-MaLR	57396.0	NM_023908	108116.0	Mm.425467	NM_023908	ENSMUSG00000025790	Slco3a1	5830414C08Rik|Anr1|MJAM|OATP-D|R75096|Slc21a11	solute carrier organic anion transporter family, member 3a1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24720491-1	chr17	24720391	24720591	+	1000.0	f1_balb.idr	promoter-TSS (NR_027900)	promoter-TSS (NR_027900)	-298.0	NR_002897	104366.0	Mm.157452	NR_002897	ENSMUSG00000077709	Snora64	MBI-29|Rnu64	small nucleolar RNA, H/ACA box 64	snoRNA	3.6393347553622	3.53028145139806	3.73659096841912	2.87485512650464	4.07119241998205	4.46852195394662	2.31252877130501	3.84869883191775	0.576373137204183	0.3335690592431	0.833601405219443
Merged-chr10-53597391-2	chr10	53597291	53597491	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025541, intron 1 of 3)	CpG	430.0	NM_025541	66403.0	Mm.272989	NM_025541	ENSMUSG00000019857	Asf1a	2310079C17Rik|C79052	anti-silencing function 1A histone chaperone	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-122217719-1	chr7	122217619	122217819	+	678.5	f0_balb.idr	Intergenic	Intergenic	-1777.0	NM_027363	70261.0	Mm.96997	NM_027363	ENSMUSG00000030865	Chp2	2010110P09Rik|Cbhp2	calcineurin-like EF hand protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-160452166-4	chr2	160452081	160452281	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-85116.0	NM_010658	16658.0	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-27211859-2	chr3	27211759	27211959	+	671.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 1 of 4)	MLTR14|LTR|ERV1	28855.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-178342249-4	chr1	178342156	178342356	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4441.0	NR_149827	51810.0	Mm.86589	NM_016805	ENSMUSG00000039630	Hnrnpu	AA408410|AI256620|AL024194|AL024437|AW557595|C86794|Hnrpu|SAFA|Sp120|hnRNP U	heterogeneous nuclear ribonucleoprotein U	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-151264978-3	chr1	151264881	151265081	+	969.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-79505.0	NM_001359262	117198.0	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-67260678-4	chr5	67260574	67260774	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_028975, exon 1 of 8)	5' UTR (NM_028975, exon 1 of 8)	109.0	NM_030108	67878.0	Mm.23217	NM_028975	ENSMUSG00000037720	Tmem33	1110006G02Rik|1600019D15Rik|2410089A21Rik|2700052H22Rik|5430406L04Rik|AA388285|AI314185|AI426615|db83	transmembrane protein 33	protein-coding	4.79408403733358	5.16261741109353	5.46735639058772	5.44381128475656	5.34300637467951	5.31016552056312	5.50325390705866	4.9775281542157	0.0659137609743004	0.827434795243023	0.998431161219273
Merged-chr12-83921336-1	chr12	83921236	83921436	+	666.0	f0_balb.idr	intron (NR_073564, intron 1 of 12)	CpG	598.0	NR_073563	18222.0	Mm.4390	NM_010949	ENSMUSG00000021224	Numb	Nb	NUMB endocytic adaptor protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-100471477-3	chr12	100471327	100471527	+	852.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033213, intron 3 of 19)	L1MEc|LINE|L1	49395.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-75259273-4	chr18	75259178	75259378	+	943.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027727, intron 16 of 16)	intron (NM_027727, intron 16 of 16)	38039.0	NR_045394	100503117.0	Mm.250517	NR_045393	ENSMUSG00000102047	2010010A06Rik	5033420E22Rik	RIKEN cDNA 2010010A06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-90771545-4	chr5	90771452	90771652	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019932)	promoter-TSS (NM_019932)	-883.0	NM_019932	56744.0	Mm.332490	NM_019932	ENSMUSG00000029373	Pf4	Cxcl4|Scyb4	platelet factor 4	protein-coding	2.60019106874199	3.53993509583599	3.49055631185683	2.94498392382209	3.05602168508808	2.94820425833512	2.09144775404263	2.02481280417494	-1.03142326222654	0.151378941445904	0.604520282650752
Merged-chr18-60864509-2	chr18	60864410	60864610	+	714.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	-15546.0	NM_001198984	21453.0	Mm.486251	NM_011552	ENSMUSG00000024613	Tcof1	AA408847|AW209012|treacle	treacle ribosome biogenesis factor 1	protein-coding	-0.439612022912903	0.547970073194403	-0.606895394395411	-0.611232439744079	-0.617442481154772	-0.600101083441922	-0.605664086466944	-0.610471388270089	-3.78277912354977	0.142995213046639	1
Merged-chr5-76183363-2	chr5	76183263	76183463	+	925.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011626)	promoter-TSS (NM_011626)	-517.0	NM_011626	21982.0	Mm.790	NM_011626	ENSMUSG00000029234	Tmem165	AV026557|Tpardl|Tparl|pFT27	transmembrane protein 165	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-102795195-2	chr14	102795095	102795295	+	878.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	187437.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-12269330-4	chr12	12269227	12269427	+	880.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146119, intron 1 of 11)	intron (NM_001146119, intron 1 of 11)	7188.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-126440422-2	chr4	126440322	126440522	+	549.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001317173, exon 17 of 19)	exon (NM_001317173, exon 17 of 19)	-10880.0	NM_153402	214150.0	Mm.440915	NM_153402	ENSMUSG00000028842	Ago3	AW048688|C130014L07Rik|Eif2c3	argonaute RISC catalytic subunit 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-58158745-4	chr13	58158653	58158853	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198004, intron 1 of 4)	B3|SINE|B2	1104.0	NM_198004	75731.0	Mm.293919	NM_198004	ENSMUSG00000050002	Idnk	5133401N09Rik	idnK gluconokinase homolog (E. coli)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152292521-3	chr1	152292408	152292608	+	596.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	94174.0	NM_025677	66637.0	Mm.379120	NM_025677	ENSMUSG00000014980	Tsen15	5730449L18Rik|AL023077|Sen15	tRNA splicing endonuclease subunit 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-145822143-4	chr2	145822048	145822248	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028724, intron 2 of 12)	intron (NM_028724, intron 2 of 12)	36032.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127620357-6	chr10	127620296	127620496	+	998.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 1 of 88)	intron (NM_008512, intron 1 of 88)	752.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-3198578-4	chr5	3198469	3198669	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-145324.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166450051-2	chr2	166449951	166450151	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_015558, intron 1 of 2)	intron (NR_015558, intron 1 of 2)	2600.0	NR_015558	319684.0	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-8672885-2	chr16	8672785	8672985	+	640.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025821)	promoter-TSS (NM_025821)	-732.0	NM_025821	52502.0	Mm.142095	NM_025821	ENSMUSG00000008393	Carhsp1	1200011K09Rik|Crhsp-24|D16Ertd465e	calcium regulated heat stable protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132617427-2	chr4	132617341	132617541	+	599.5	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-21605.0	NM_210071	14050.0	Mm.227733	NM_010166	ENSMUSG00000028886	Eya3	AI844637	EYA transcriptional coactivator and phosphatase 3	protein-coding	1.40613080386456	0.81303965735719	0.793135776261362	1.73037502874382	2.2817391252793	0.817435576633726	0.797584147488863	1.9327269931141	1.16127184061338	0.424748923016722	0.901293602726532
Merged-chr10-117216264-4	chr10	117216180	117216380	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026570, intron 6 of 6)	intron (NM_026570, intron 6 of 6)	8227.0	NM_026570	64050.0	Mm.233529	NM_026570	ENSMUSG00000020171	Yeats4	4930573H17Rik|B230215M10Rik|GAS41|NuBI-1	YEATS domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-53504889-2	chr10	53504789	53504989	+	788.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_037973, intron 3 of 3)	intron (NR_037973, intron 3 of 3)	14100.0	NR_037973	100502868.0	Mm.297722	NR_037973	ENSMUSG00000112739	Gm20597	B230314j19	predicted gene, 20597	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-99942707-4	chr12	99942608	99942808	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028354, intron 14 of 15)	intron (NM_028354, intron 14 of 15)	-21791.0	NM_001164426	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-33242691-4	chr4	33242603	33242803	+	823.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	6084.0	NM_001033225	108767.0	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-114640265-2	chr5	114640165	114640365	+	552.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_022017, exon 3 of 16)	exon (NM_022017, exon 3 of 16)	18156.0	NM_022017	63873.0	Mm.266450	NM_022017	ENSMUSG00000014158	Trpv4	0610033B08Rik|OTRPC4|Trp12|VR-OAC|VRL-2|VROAC	transient receptor potential cation channel, subfamily V, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-81099443-3	chr3	81099343	81099543	+	676.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019971, intron 1 of 5)	RSINE1|SINE|B4	63027.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-13361838-4	chr14	13361755	13361955	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028052, intron 2 of 5)	intron (NM_028052, intron 2 of 5)	77075.0	NM_028052	72003.0	Mm.317515	NM_028052	ENSMUSG00000056296	Synpr	1500003F20Rik|SPO	synaptoporin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71605457-2	chr8	71605357	71605557	+	717.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166213, intron 12 of 14)	intron (NM_001166213, intron 12 of 14)	-5567.0	NM_146211	234407.0	Mm.240885	NM_146211	ENSMUSG00000034807	Colgalt1	2810024B22Rik|Glt25d1	collagen beta(1-O)galactosyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-99200889-2	chr4	99200783	99200983	+	920.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_175029, intron 1 of 10)	MTD|LTR|ERVL-MaLR	6736.0	NM_001145967	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	1.02004382526532	0.645447168338001	1.24031664113306	0.627668061490455	1.22932518524311	1.17826069352404	1.25243370400253	0.629030835814695	0.861360593069936	0.580006704611528	0.966158891419258
Merged-chr15-72929334-1	chr15	72929234	72929434	+	840.0	f0_balb.idr	intron (NM_029640, intron 14 of 21)	intron (NM_029640, intron 14 of 21)	-119010.0	NR_002864	353342.0	Mm.440245	NR_002864	ENSMUSG00000106847	Peg13	-	paternally expressed 13	ncRNA	1.09138860360341	0.965019336835268	1.83176012027434	1.29983820175299	1.49536565476983	1.68674949842398	1.84761524181288	1.30597119175053	0.879026178675672	0.465801392742995	0.922736970596151
Merged-chr16-33890809-2	chr16	33890709	33890909	+	815.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 5 of 14)	ID_B1|SINE|B4	61144.0	NM_001145884	16419.0	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-21643352-2	chr16	21643252	21643452	+	983.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081366, intron 46 of 46)	intron (NM_001081366, intron 46 of 46)	51313.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80097078-2	chr7	80096978	80097178	+	687.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_173011, intron 7 of 10)	RSINE1|SINE|B4	18272.0	NM_173011	269951.0	Mm.246432	NM_173011	ENSMUSG00000030541	Idh2	E430004F23|IDPm|Idh-2	isocitrate dehydrogenase 2 (NADP+), mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-39138019-4	chr18	39137923	39138123	+	912.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361073, intron 10 of 21)	intron (NM_001361073, intron 10 of 21)	144878.0	NM_175164	71302.0	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-49058699-4	chr13	49058599	49058799	+	684.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290313, intron 21 of 29)	intron (NM_001290313, intron 21 of 29)	89629.0	NM_029361	75607.0	Mm.342723	NM_029361	ENSMUSG00000037989	Wnk2	1810073P09Rik|AW122246|ESTM15|X83337|mKIAA1760	WNK lysine deficient protein kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-122312276-3	chr3	122312155	122312355	+	792.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18552.0	NR_030439	791077.0		NR_030439	ENSMUSG00000076456	Mir760	Mirn760|mir-760|mmu-mir-760	microRNA 760	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94690558-3	chr10	94690458	94690658	+	636.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029852, intron 1 of 15)	RMER10A|LTR|ERVL	1768.0	NM_029852	77048.0	Mm.296971	NM_029852	ENSMUSG00000020024	Cep83	2600001G24Rik|4921537D05Rik|5730513H21Rik|Ccdc41	centrosomal protein 83	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-45790774-4	chr19	45790678	45790878	+	971.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7225.0	NM_023799	76055.0	Mm.122725	NM_023799	ENSMUSG00000025220	Mgea5	Hy5|Ncoat|OGA	meningioma expressed antigen 5 (hyaluronidase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-35278786-2	chr9	35278686	35278886	+	733.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR73|LTR|ERV1	-2319.0	NR_040715	71133.0	Mm.158577	NR_040715	ENSMUSG00000111746	4933422A05Rik	-	RIKEN cDNA 4933422A05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-125372195-2	chr10	125372095	125372295	+	549.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43232.0	NM_001358496	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-43555763-4	chr2	43555649	43555849	+	890.275024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289593, intron 1 of 12)	intron (NM_001289593, intron 1 of 12)	424.0	NM_027552	70789.0	Mm.105278	NM_027552	ENSMUSG00000026866	Kynu	4432411A05Rik	kynureninase (L-kynurenine hydrolase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-34607875-4	chr19	34607795	34607995	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001005858)	promoter-TSS (NM_001005858)	-62.0	NM_001005858	667370.0	Mm.271850	NM_001005858	ENSMUSG00000062488	Ifit3b	I830012O16Rik	interferon-induced protein with tetratricopeptide repeats 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-17933762-1	chr14	17933662	17933862	+	734.0	f0_balb.idr	intron (NM_001113417, intron 3 of 9)	intron (NM_001113417, intron 3 of 9)	-47882.0	NM_009380	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	-2.18375600819439	-2.15556918946382	-2.16409311609999	-2.17109492323169	-2.18177734563694	-2.01960173909294	-2.16216348594872	-2.16984160310277	0.759018020146679	0.829933115115583	1
Merged-chr7-142372159-4	chr7	142372008	142372208	+	915.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347541, intron 1 of 2)	CpG	151.0	NM_177265	320802.0	Mm.154486	NM_177265	ENSMUSG00000045777	Ifitm10	6330512M04Rik|AI848576|DSPA3	interferon induced transmembrane protein 10	protein-coding	-0.258114899952938	0.458582033829485	-0.400654685181825	-0.404244101071953	-0.121269571299927	-0.394970441898952	-0.399630094108539	-0.403616438325458	-2.06345515265467	0.408958481013055	1
Merged-chr15-62382432-4	chr15	62382333	62382533	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-162982.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-100570833-3	chr5	100570755	100570955	+	648.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139198, intron 1 of 4)	intron (NM_139198, intron 1 of 4)	1350.0	NM_139198	231507.0	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-24934380-2	chr16	24934280	24934480	+	589.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 10 of 12)	intron (NM_178665, intron 10 of 12)	-125259.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-48993734-2	chr16	48993634	48993834	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172616)	promoter-TSS (NM_172616)	378.0	NM_027341	224170.0	Mm.275138	NM_027341	ENSMUSG00000064061	Dzip3	2310047C04Rik|2A-HUB|6430549P11Rik|A230104G20	DAZ interacting protein 3, zinc finger	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-120527698-4	chr5	120527598	120527798	+	975.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177595, intron 11 of 13)	intron (NM_001177595, intron 11 of 13)	16506.0	NM_001177594	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	0.719160945102166	0.587961961064914	0.776677283205289	1.04570348081189	0.99000052541198	0.809958934426544	0.782719760237395	1.68530798096139	1.60774114494859	0.27016998070617	0.773381444690463
Merged-chr9-20872949-2	chr9	20872849	20873049	+	706.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_145154)	TTS (NM_145154)	4307.0	NM_175687	319278.0	Mm.249932	NM_175687	ENSMUSG00000038884	A230050P20Rik	RyDEN	RIKEN cDNA A230050P20 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-16864664-4	chr12	16864555	16864755	+	827.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30323.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-45608673-2	chr16	45608573	45608773	+	838.299988	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1767.0	NM_008099	14525.0	Mm.4799	NM_008099	ENSMUSG00000022659	Gcsam	Gcet|Gcet2|M17|M17-L	germinal center associated, signaling and motility	protein-coding	-1.7024385483431	-1.81249224917775	-1.82134771053534	-1.82862185015837	-1.70038292649591	-1.81057323376012	-1.81934302819017	-1.82731978264371	0.0376840119903864	0.991491645451152	1
Merged-chr2-128375082-1	chr2	128374982	128375182	+	709.333313	f1_balb.idr	intron (NR_028591, intron 1 of 1)	intron (NR_028591, intron 1 of 1)	54269.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	1.86392410836314	0.900826869392524	0.866468529658535	0.838494221239591	1.6221902207296	0.908303212225182	3.04726716472756	2.89100821016325	3.0027449128857	0.157273162370851	0.613979415008289
Merged-chr7-145190717-2	chr7	145190621	145190821	+	804.166626	f1_balb.idr|f1_c57bl6.idr	intron (NR_132643, intron 20 of 22)	B4A|SINE|B4	17398.0	NR_033626	100040049.0	Mm.102235	NR_033626	ENSMUSG00000109305	1810010D01Rik	Gm2572	RIKEN cDNA 1810010D01 gene	ncRNA	-1.10384998116487	-1.07946603826229	-1.09181520747217	-1.09984628216847	-1.10325314425446	-1.07678992177872	-1.08901962624914	-0.315793331868817	3.00679100283758	0.36959816332642	1
Merged-chr4-62507053-2	chr4	62506953	62507153	+	973.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008525, exon 12 of 12)	3' UTR (NM_008525, exon 12 of 12)	-4853.0	NM_024257	72748.0	Mm.41506	NM_024257	ENSMUSG00000038422	Hdhd3	2810435D12Rik	haloacid dehalogenase-like hydrolase domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-53122073-2	chr2	53121973	53122173	+	594.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 21 of 26)	intron (NM_172409, intron 21 of 26)	69114.0	NM_018785	56194.0	Mm.257474	NM_018785	ENSMUSG00000061136	Prpf40a	2810012K09Rik|FBP-11|FBP11|Fnbp11|Fnbp3	pre-mRNA processing factor 40A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-91709956-2	chr12	91709856	91710056	+	640.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 4 of 6)	intron (NM_175367, intron 4 of 6)	76480.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-6130142-3	chr2	6130019	6130219	+	758.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159657)	promoter-TSS (NM_001159657)	66.0	NM_144883	227545.0	Mm.133542	NM_144883	ENSMUSG00000045319	Proser2	5430407P10Rik|AU067770	proline and serine rich 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-30024886-4	chr16	30024804	30025004	+	979.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045878, intron 3 of 3)	intron (NR_045878, intron 3 of 3)	14575.0	NR_045878	71528.0	Mm.297640	NR_045878		9030404E10Rik	-	RIKEN cDNA 9030404E10 gene	ncRNA	3.52142717281565	3.2156065762516	3.6764037833264	2.35914623338184	3.2273458695725	3.12722151742213	3.63671891042692	3.22387472393294	0.0514753789641016	0.932458235382052	0.998431161219273
Merged-chr11-96873286-3	chr11	96873192	96873392	+	986.2777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22899.0	NR_029562	387170.0		NR_029562	ENSMUSG00000065515	Mir152	Mirn152|mir-152|mmu-mir-152	microRNA 152	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-35049208-1	chr9	35049108	35049308	+	651.0	f1_c57bl6.idr	intron (NM_009178, intron 9 of 10)	intron (NM_009178, intron 9 of 10)	-67520.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	1.3158879604561	3.28632252060037	2.60687817768324	2.3315315789603	1.85978848246143	1.1977586586532	1.16060468059725	2.44731095900525	-1.70290808168281	0.107013011968854	0.511259138944374
Merged-chr7-12981327-1	chr7	12981227	12981427	+	551.0	f1_c57bl6.idr	intron (NM_175558, intron 4 of 5)	ID_B1|SINE|B4	3479.0	NM_001168561	269870.0	Mm.62083	NM_175558	ENSMUSG00000033961	Zfp446	A630035I11Rik|A930031C22|AA120513|AV306632	zinc finger protein 446	protein-coding	-0.815957785555273	-0.760190495783052	-0.941963729296466	-0.792510399180303	-0.812463538115243	-0.930751067031716	-0.941446469876543	-0.790047871569793	-0.580225176376768	0.824091155047702	1
Merged-chr6-13069799-4	chr6	13069719	13069919	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027992)	promoter-TSS (NM_027992)	60.0	NM_027992	71900.0	Mm.27742	NM_027992	ENSMUSG00000029571	Tmem106b	2310036D22Rik|5830455K21Rik|6430519M21Rik|AI428776|AI661344	transmembrane protein 106B	protein-coding	4.8135270578472	5.71825971019532	5.85782951666084	4.82379426366943	4.78031185042723	4.87057434513002	5.56929554833102	4.7200606971621	-0.411636091316787	0.252667518322739	0.750119406264342
Merged-chr10-88731812-2	chr10	88731712	88731912	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001037166)	promoter-TSS (NM_001037166)	398.0	NM_025859	104303.0	Mm.291247	NM_025859	ENSMUSG00000060904	Arl1	2310008D22Rik|AU019749	ADP-ribosylation factor-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105510274-2	chr8	105510174	105510374	+	913.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8472.0	NM_008289	15484.0	Mm.5079	NM_008289	ENSMUSG00000031891	Hsd11b2	11HSD2	hydroxysteroid 11-beta dehydrogenase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-38346018-4	chr6	38345892	38346092	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028864, intron 1 of 8)	intron (NM_028864, intron 1 of 8)	8611.0	NM_001347122	78781.0	Mm.25243	NM_028421	ENSMUSG00000029826	Zc3hav1	1200014N16Rik|2900058M19Rik|9130009D18Rik|9830115L13Rik|ARTD13|D6Bwg1452e|ZAP	zinc finger CCCH type, antiviral 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-95551933-2	chr10	95551833	95552033	+	920.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358996, intron 2 of 4)	B2_Mm2|SINE|B2	7388.0	NR_037212	100526463.0		NR_037212	ENSMUSG00000092867	Mir3058	mir-3058|mmu-mir-3058	microRNA 3058	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99378500-2	chr7	99378400	99378600	+	671.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3018.0	NM_001362168	233552.0	Mm.286317	NM_201352	ENSMUSG00000035314	Gdpd5	BC024955|Gde2	glycerophosphodiester phosphodiesterase domain containing 5	protein-coding	0.722913223401028	0.285114478251014	0.59346431562206	0.274304336395927	0.898871119117161	0.286491564032668	0.600857722111398	0.435553774669618	0.600184145204721	0.742438368622713	1
Merged-chr10-18545943-1	chr10	18545843	18546043	+	724.5	f0_balb.idr	5' UTR (NM_019487, exon 1 of 4)	5' UTR (NM_019487, exon 1 of 4)	133.0	NM_019487	56016.0	Mm.35551	NM_019487	ENSMUSG00000019853	Hebp2	SOUL	heme binding protein 2	protein-coding	1.98575744145299	1.42301384893434	1.9156654968746	1.98682557734724	2.10286510955977	2.95200408994573	1.38838522337245	1.10275600033398	0.649914853666297	0.546450632887737	0.957405767141804
Merged-chr11-58334078-1	chr11	58333978	58334178	+	572.0	f1_balb.idr	intron (NM_001308167, intron 2 of 6)	intron (NM_001308167, intron 2 of 6)	3288.0	NM_001308168	79566.0	Mm.290534	NM_024480	ENSMUSG00000013646	Sh3bp5l	2310074E09Rik|BC003251|mKIAA1720	SH3 binding domain protein 5 like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-62338989-1	chr3	62338889	62339089	+	793.0	f0_balb.idr	5' UTR (NM_001081295, exon 1 of 14)	5' UTR (NM_001081295, exon 1 of 14)	212.0	NM_001081295	622434.0	Mm.153974	NM_001081295	ENSMUSG00000036885	Arhgef26	4631416L12Rik|8430436L14Rik|AI303572|AW491953|SGEF	Rho guanine nucleotide exchange factor (GEF) 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-127441329-4	chr8	127441244	127441444	+	998.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033620, intron 20 of 24)	intron (NM_033620, intron 20 of 24)	141692.0	NM_001013580	93742.0	Mm.299254	NM_033620	ENSMUSG00000025812	Pard3	AA960621|AI256638|Asip|D8Ertd580e|Par-3|Par3|Pard-3|Pard3a|Phip	par-3 family cell polarity regulator	protein-coding	6.90679628829064	7.12815834432659	7.52754316610726	7.0772046875755	5.4567672329051	5.91178357909657	5.60695311894573	4.93987263457118	-1.79481013972536	1.76845022914106e-14	8.60183750644641e-12
Merged-chr14-56817397-2	chr14	56817297	56817497	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5408.0	NR_152252	100503842.0	Mm.297636	NR_152252	ENSMUSG00000100017	2410022M11Rik	-	RIKEN cDNA 2410022M11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-94700044-2	chr16	94699944	94700144	+	569.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	88625.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-79980427-2	chr10	79980327	79980527	+	661.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359632, intron 1 of 9)	RSINE1|SINE|B4	3833.0	NM_001359632	216157.0	Mm.29442	NM_001003949	ENSMUSG00000013858	Tmem259	AC087114.7gm2|ORF61|R32184_3|mFLJ00277	transmembrane protein 259	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-58224497-4	chr11	58224380	58224580	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17D2|LTR|ERVK	9503.0	NM_019440	54396.0	Mm.458517	NM_019440	ENSMUSG00000069874	Irgm2	AI481100|GTPI|Ifggd2|Iigp2	immunity-related GTPase family M member 2	protein-coding	3.96531952653421	3.72059485995615	2.9742529673583	4.69141712229511	2.97319114603073	3.66136688869061	2.70105194770771	4.0851174908321	-0.738408161355319	0.213053286555632	0.702771260656472
Merged-chr6-97509611-4	chr6	97509516	97509716	+	943.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	-21796.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-26974212-2	chr8	26974112	26974312	+	577.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3124.0	NM_001101502	353310.0	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-35595905-3	chr5	35595806	35596006	+	859.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030721, intron 8 of 18)	intron (NM_030721, intron 8 of 18)	-7143.0	NR_045807	74364.0	Mm.473123	NM_175208	ENSMUSG00000055061	4931431C16Rik	-	RIKEN cDNA 4931431C16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99820108-4	chr15	99820017	99820217	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023063)	promoter-TSS (NM_023063)	32.0	NM_023063	65970.0	Mm.33207	NM_023063	ENSMUSG00000023022	Lima1	Eplin	LIM domain and actin binding 1	protein-coding	1.87051308354978	1.63169390875178	2.2192848691881	1.66172680394976	0.955571781286551	1.01937789405562	1.96259485278598	1.2010861091208	-1.60862267740677	0.184847489178163	0.660415655093519
Merged-chr10-84917262-4	chr10	84917257	84917457	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183172)	promoter-TSS (NM_183172)	-256.0	NM_001013441	237422.0	Mm.18936	NM_183172	ENSMUSG00000035620	Ric8b	BC051080|Ric-8|Ric-8b	RIC8 guanine nucleotide exchange factor B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-34416110-4	chr10	34416008	34416208	+	887.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176968, intron 1 of 11)	RMER6A|LTR|ERVK	2443.0	NM_176968	319638.0	Mm.73467	NM_176968	ENSMUSG00000039480	Nt5dc1	6030401B09Rik|AW987726|Nt5c2l1	5'-nucleotidase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120334365-2	chr8	120334265	120334465	+	760.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-106135.0	NR_110496	434353.0	Mm.411793	NR_110496	ENSMUSG00000097960	A330074K22Rik	-	RIKEN cDNA A330074K22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97801180-4	chr11	97801095	97801295	+	947.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010688, intron 1 of 6)	intron (NM_010688, intron 1 of 6)	1630.0	NM_010688	16796.0	Mm.271967	NM_010688	ENSMUSG00000038366	Lasp1	AA408629|Def-4|LASP-1|MLN 50|SH3P6|Tg(Col1a1-lacZ)1Ngma	LIM and SH3 protein 1	protein-coding	-0.69026880524928	0.348396731656884	-0.680290723892913	-0.684017379141994	-0.515360378335351	-0.674430249069068	-0.679230666156356	-0.683364252330158	-2.75006166424716	0.31396396345644	1
Merged-chr14-20892088-3	chr14	20891967	20892167	+	822.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37331.0	NM_009502	22330.0	Mm.279361	NM_009502	ENSMUSG00000021823	Vcl	9430097D22|AA571387|AI462105|AW545629	vinculin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-52039049-2	chr16	52038949	52039149	+	924.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033238, intron 2 of 17)	intron (NM_001033238, intron 2 of 17)	7500.0	NM_001033238	208650.0	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-121708980-3	chr9	121708910	121709110	+	836.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1379.0	NM_026794	26901.0	Mm.24848	NM_026794	ENSMUSG00000032526	Ss18l2	1110020I04Rik|AI463209|Deb1	SS18, nBAF chromatin remodeling complex subunit like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-103965714-4	chr2	103965617	103965817	+	961.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142337, intron 1 of 3)	intron (NM_001142337, intron 1 of 3)	-3840.0	NM_001142336	16909.0	Mm.29266	NM_008505	ENSMUSG00000032698	Lmo2	Rbtn-2|Rbtn2|Rhom-2|Ttg2	LIM domain only 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180366561-3	chr1	180366455	180366655	+	756.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081175, intron 2 of 7)	intron (NM_001081175, intron 2 of 7)	-36006.0	NR_003623	277333.0	Mm.389223	NM_199472		Gm5069	EG277333	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-142041782-2	chr4	142041682	142041882	+	860.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_145402, intron 1 of 2)	intron (NM_145402, intron 1 of 2)	23884.0	NR_131014	78917.0	Mm.139995	NR_131014	ENSMUSG00000085761	4930455G09Rik	-	RIKEN cDNA 4930455G09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-20961486-4	chr2	20961385	20961585	+	834.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001128084, intron 1 of 24)	intron (NM_001128084, intron 1 of 24)	6236.0	NM_001081364	71435.0	Mm.28507	NM_001081364	ENSMUSG00000036591	Arhgap21	5530401C11Rik|AA416458|ARHGAP10	Rho GTPase activating protein 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-17360382-4	chr18	17360295	17360495	+	938.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-124913.0	NR_033607	664619.0	Mm.250005	NR_033607		4921533I20Rik	-	PRP18 pre-mRNA processing factor 18 homolog pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-87277625-2	chr17	87277525	87277725	+	642.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_015506, intron 2 of 4)	ORR1E|LTR|ERVL-MaLR	5189.0	NR_015506	74597.0	Mm.63783	NR_015506	ENSMUSG00000085287	4833418N02Rik	-	RIKEN cDNA 4833418N02 gene	ncRNA	-2.18308165884198	-2.15547475440471	-2.16382331017202	-2.1706810624505	-2.18114370519566	-2.15366558754311	-2.03057248461154	-2.16945352807143	0.759018020146679	0.829933115115583	1
Merged-chr1-127859290-4	chr1	127859168	127859368	+	946.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9505.0	NM_178690	226407.0	Mm.489713	NM_178690	ENSMUSG00000036104	Rab3gap1	1700003B17Rik|4732493F09Rik|AL117896|Rab3gap|p130	RAB3 GTPase activating protein subunit 1	protein-coding	0.660463590561011	1.07785403363601	0.745458738915767	1.50014226725743	0.343350081427413	0.375264311615325	0.365046028523063	0.356202569879048	-4.59088844753557	0.00884900178532499	1
Merged-chr11-118200532-4	chr11	118200430	118200630	+	660.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	L1MB3|LINE|L1	12212.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70616860-4	chr8	70616769	70616969	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153074)	promoter-TSS (NM_153074)	25.0	NM_153074	211228.0	Mm.132939	NM_153074	ENSMUSG00000049988	Lrrc25	Mapa	leucine rich repeat containing 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-134689633-4	chr7	134689565	134689765	+	884.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033420, intron 1 of 51)	intron (NM_001033420, intron 1 of 51)	18978.0	NM_001033420	330662.0	Mm.436572	NM_001033420	ENSMUSG00000058325	Dock1	9130006G06Rik|AI854900|D630004B07Rik|b2b3190Clo	dedicator of cytokinesis 1	protein-coding	1.21737867708144	1.11727999025497	0.730203703176402	1.5686784097681	1.22866416603741	1.12586984451067	0.732554994134505	1.05376734322105	-0.670083442343955	0.63587491746564	0.982417279970648
Merged-chr19-17314710-4	chr19	17314568	17314768	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	24837.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	5.37337756021915	4.92372622477375	4.4627004870762	5.54102603674973	5.47470592803451	5.74159598072926	4.70975728682581	4.41694159983527	0.0534205967629733	0.887665758643265	0.998431161219273
Merged-chr2-30124551-4	chr2	30124427	30124627	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290503)	promoter-TSS (NM_001290503)	84.0	NM_178694	227693.0	Mm.44526	NM_178694	ENSMUSG00000039686	Zer1	C230075L19Rik|Zyg11bl	zyg-11 related, cell cycle regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-95853101-4	chr9	95853002	95853202	+	882.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4415.0	NR_073361	73410.0	Mm.443314	NM_028533	ENSMUSG00000096655	1700065D16Rik	-	RIKEN cDNA 1700065D16 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-154891805-2	chr2	154891705	154891905	+	609.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_026030, intron 1 of 8)	intron (NM_026030, intron 1 of 8)	1101.0	NM_026030	67204.0	Mm.377134	NM_026030	ENSMUSG00000074656	Eif2s2	2810026E11Rik|38kDa|AA408636|AA571381|AA986487|AW822225|D2Ertd303e|EIF2|EIF2B	eukaryotic translation initiation factor 2, subunit 2 (beta)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-3424014-4	chr2	3423915	3424115	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146114)	promoter-TSS (NM_146114)	-116.0	NM_146114	227525.0	Mm.23483	NM_146114	ENSMUSG00000026648	Dclre1c	9930121L06Rik|AI661365|Art|Snm1l	DNA cross-link repair 1C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-120857809-4	chr10	120857712	120857912	+	870.133301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038023, intron 1 of 2)	intron (NR_038023, intron 1 of 2)	183.0	NR_038023	100504616.0	Mm.451174	NR_038023	ENSMUSG00000087480	Gm15910	-	predicted gene 15910	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-36916963-4	chr10	36916862	36917062	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57582.0	NM_008229	15182.0	Mm.19806	NM_008229	ENSMUSG00000019777	Hdac2	D10Wsu179e|YAF1|Yy1bp|mRPD3	histone deacetylase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-118537445-4	chr2	118537342	118537542	+	875.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001331221, intron 3 of 3)	intron (NM_001331221, intron 3 of 3)	7145.0	NR_138603	171543.0	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	1.96334330066844	1.84187204744285	0.953746477126542	2.00215009402404	1.40835567750625	1.58542831614449	1.18497203862291	0.941880393510428	-1.54516780969679	0.215326729155997	0.705944860566832
Merged-chr1-53825109-4	chr1	53824989	53825189	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001883, intron 28 of 28)	intron (NM_001001883, intron 28 of 28)	-24335.0	NR_106149	102465783.0		NR_106149	ENSMUSG00000098443	Mir7681	Gm27806|mmu-mir-7681	microRNA 7681	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-128345118-4	chr7	128345005	128345205	+	825.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46974.0	NM_145590	233913.0	Mm.220880	NM_145590	ENSMUSG00000030780	BC017158	-	cDNA sequence BC017158	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-83740299-4	chr8	83740198	83740398	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011925, intron 1 of 19)	intron (NM_011925, intron 1 of 19)	1013.0	NM_001163029	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-39782959-2	chr6	39782859	39783059	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27977.0	NM_010270	14548.0	Mm.377071	NM_010270	ENSMUSG00000029918	Mrps33	AI841153|CGI-139|Gdap3|MRP-S33|PTD003	mitochondrial ribosomal protein S33	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126844731-4	chr8	126844621	126844821	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4299.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76948461-4	chr15	76948436	76948636	+	987.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_054099, exon 1 of 4)	5' UTR (NM_054099, exon 1 of 4)	275.0	NM_001347540	117171.0	Mm.322968	NM_054099	ENSMUSG00000063236	1110038F14Rik	-	RIKEN cDNA 1110038F14 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-59480198-1	chr1	59480098	59480298	+	607.0	f1_c57bl6.idr	Intergenic	Intergenic	-1949.0	NM_008057	14369.0	Mm.297906	NM_008057	ENSMUSG00000041075	Fzd7	Fz7	frizzled class receptor 7	protein-coding	-1.13146769101922	-1.10460487238646	-1.11735372523027	-1.12713099301154	-1.13082009585647	-0.300663969208598	-1.11446766439333	-1.12595147812057	3.06518455575839	0.353555291099784	1
Merged-chr17-47802619-1	chr17	47802519	47802719	+	589.333313	f1_balb.idr	Intergenic	ID_B1|SINE|B4	16875.0	NM_011549	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	2.19986031070855	1.30999638528936	2.27412717688699	3.19294828145093	1.64240194201517	1.31879587575655	2.82910149439629	3.03080103727922	-0.0152246459909786	0.988074112396364	0.998431161219273
Merged-chr15-6591623-1	chr15	6591523	6591723	+	693.0	f0_balb.idr	intron (NM_011815, intron 1 of 17)	intron (NM_011815, intron 1 of 17)	11776.0	NM_011815	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-53668789-4	chr2	53668684	53668884	+	891.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx10|LINE|L1	416768.0	NM_023396	67874.0	Mm.27086	NM_023396	ENSMUSG00000075334	Rprm	2410012A13Rik|Reprimo	reprimo, TP53 dependent G2 arrest mediator candidate	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-5795235-1	chr2	5795135	5795335	+	548.0	f1_balb.idr	intron (NM_133837, intron 12 of 12)	intron (NM_133837, intron 12 of 12)	-49799.0	NM_016918	53893.0	Mm.251904	NM_016918	ENSMUSG00000025817	Nudt5	-	nudix (nucleoside diphosphate linked moiety X)-type motif 5	protein-coding	0.614931502804197	0.65582606330323	1.62824311095621	0.632402890985744	0.799005088053568	1.08494365542632	1.32747554069884	1.57957106058527	0.980110422798885	0.524001382559588	0.948197779519432
Merged-chr13-95834740-3	chr13	95834636	95834836	+	760.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027711, intron 2 of 35)	L1M4|LINE|L1	57186.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	0.451554074251227	0.397031901076635	0.198919853475532	0.194153164169956	0.911284826458572	0.703630788067466	0.200281976803731	0.360650510594588	1.88757793086707	0.319571732687898	1
Merged-chr4-28813816-3	chr4	28813743	28813943	+	898.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010141, intron 1 of 16)	CpG	698.0	NM_001122889	13841.0	Mm.257266	NM_010141	ENSMUSG00000028289	Epha7	Cek11|Ebk|Ehk3|Hek11|Mdk1	Eph receptor A7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-26711635-4	chr18	26711526	26711726	+	996.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-957469.0	NM_001362334	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-92968630-3	chr13	92968526	92968726	+	873.355591	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-104678.0	NR_036451	100502942.0	Mm.441946	NM_177623	ENSMUSG00000114382	Gm4814	C920025J10|EG218444	predicted gene 4814	ncRNA	3.63179832974336	4.00126276192642	2.39961824397702	3.71961363766131	2.48438341177632	3.1764527539402	1.78400361797385	1.4288541277327	-1.9830689527073	0.0109919648593943	0.116260095687144
Merged-chr19-52976114-2	chr19	52976014	52976214	+	679.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34642.0	NR_105834	102465220.0		NR_105834	ENSMUSG00000098730	Mir6407	Gm27832|mmu-mir-6407	microRNA 6407	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-90736361-2	chr6	90736261	90736461	+	724.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356440, intron 1 of 13)	CpG	-19832.0	NM_001134383	232227.0	Mm.196943	NM_182784	ENSMUSG00000034312	Iqsec1	AW561907|BC026481|BRAG2|D6Ertd349e|cI-43	IQ motif and Sec7 domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167906058-2	chr2	167905958	167906158	+	601.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-26269.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-70150907-4	chr10	70150792	70150992	+	941.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111121, intron 2 of 8)	intron (NM_001111121, intron 2 of 8)	53771.0	NM_001111121	76551.0	Mm.281741	NM_001111121	ENSMUSG00000048701	Ccdc6	2810012H18Rik|AA536681|AA960498|AW061011	coiled-coil domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126696907-2	chr7	126696807	126697007	+	708.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_175103)	TTS (NM_175103)	907.0	NM_175103	66162.0	Mm.358692	NM_175103	ENSMUSG00000047721	Bola2	1110025L05Rik|BolA-2	bolA-like 2 (E. coli)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107610221-1	chr9	107610121	107610321	+	562.0	f1_c57bl6.idr	promoter-TSS (NM_001291539)	promoter-TSS (NM_001291539)	-980.0	NM_001291539	20347.0	Mm.4083	NM_009153	ENSMUSG00000057969	Sema3b	SemA|Semaa|sema5|semaV	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127506447-2	chr10	127506347	127506547	+	572.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359751, intron 6 of 11)	ID_B1|SINE|B4	4730.0	NM_177707	237611.0	Mm.32087	NM_177707	ENSMUSG00000040287	Stac3	9830125E18	SH3 and cysteine rich domain 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-99379723-4	chr9	99379627	99379827	+	821.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21197.0	NM_177775	272636.0	Mm.490440	NM_177775	ENSMUSG00000037681	Esyt3	D930024E11|D9Ertd280e|Fam62c|mKIAA4186	extended synaptotagmin-like protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-140983535-4	chr4	140983419	140983619	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3354.0	NM_029097	74772.0	Mm.205625	NM_029097	ENSMUSG00000036622	Atp13a2	1110012E06Rik|AA589443	ATPase type 13A2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-26200314-2	chr11	26200214	26200414	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_027973, intron 1 of 5)	intron (NR_027973, intron 1 of 5)	-1926.0	NR_105791	102466154.0		NR_105791	ENSMUSG00000099015	Mir6372	Gm27358|mmu-mir-6372	microRNA 6372	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-110810755-2	chr5	110810655	110810855	+	942.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009469)	promoter-TSS (NM_009469)	-674.0	NM_001347394	22241.0	Mm.271898	NM_009469	ENSMUSG00000029512	Ulk1	AU041434|Unc51.1|mKIAA0722	unc-51 like kinase 1	protein-coding	0.256753025079815	-0.0745331980184538	-0.0787856834203917	-0.0820493173708339	-0.0866356421958882	0.259548575960665	0.228265211584673	0.315262312608893	1.57095631741818	0.478094399308184	1
Merged-chr1-43465180-4	chr1	43465096	43465296	+	792.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010879, intron 1 of 4)	intron (NM_010879, intron 1 of 4)	19445.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-28991081-2	chr19	28990981	28991181	+	988.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001302380, intron 1 of 6)	intron (NM_001302380, intron 1 of 6)	729.0	NM_025950	67072.0	Mm.78875	NM_025950	ENSMUSG00000024780	Cdc37l1	2700033A15Rik|BB159850|Cdc37l|Harc	cell division cycle 37-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-102236307-2	chr15	102236207	102236407	+	547.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001042727, intron 7 of 7)	intron (NM_001042727, intron 7 of 7)	-4372.0	NM_013566	16421.0	Mm.58	NM_013566	ENSMUSG00000001281	Itgb7	Ly69	integrin beta 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122268981-2	chr8	122268881	122269081	+	554.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13160.0	NM_009569	22761.0	Mm.3105	NM_009569	ENSMUSG00000049577	Zfpm1	FOG|Fog1	zinc finger protein, multitype 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126787787-1	chr7	126787687	126787887	+	913.0	f1_balb.idr	intron (NM_019674, intron 5 of 8)	intron (NM_019674, intron 5 of 8)	4577.0	NM_001360464	56420.0	Mm.41998	NM_019674	ENSMUSG00000030697	Ppp4c	1110002D08Rik|AU016079|PP-X|PP4C|Ppx|pp4	protein phosphatase 4, catalytic subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-88206941-2	chr7	88206841	88207041	+	913.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-71144.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-157039268-4	chr1	157039191	157039391	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	69359.0	NM_001305059	73435.0	Mm.116705	NM_028540	ENSMUSG00000026592	Tex35	1700057K13Rik	testis expressed 35	protein-coding	5.64213178823749	5.99634229776959	6.23044109026307	5.947631789569	5.831919413614	5.77704278279208	6.10247080066817	6.13516158587829	0.00766940406135934	0.974431782375909	0.998431161219273
Merged-chr2-154892850-4	chr2	154892665	154892865	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_026030, exon 1 of 9)	5' UTR (NM_026030, exon 1 of 9)	141.0	NM_026030	67204.0	Mm.377134	NM_026030	ENSMUSG00000074656	Eif2s2	2810026E11Rik|38kDa|AA408636|AA571381|AA986487|AW822225|D2Ertd303e|EIF2|EIF2B	eukaryotic translation initiation factor 2, subunit 2 (beta)	protein-coding	3.67442859774664	3.82428661152468	4.08629753071911	3.15243950785125	3.91996489579487	3.77176960747533	4.17031529689393	2.80020644025211	0.0482773362051247	0.928350189232839	0.998431161219273
Merged-chr12-4232953-4	chr12	4232854	4233054	+	904.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134046, intron 2 of 6)	intron (NM_134046, intron 2 of 6)	1011.0	NM_134046	52504.0	Mm.70546	NM_134046	ENSMUSG00000020652	Cenpo	2810429O05Rik|8430427C03Rik|D12Ertd482e	centromere protein O	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-88632898-2	chr5	88632798	88632998	+	833.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359208, intron 10 of 13)	B3|SINE|B2	42682.0	NM_001098476	231413.0	Mm.332474	NM_178700	ENSMUSG00000044221	Grsf1	BB232551|C80280|D5Wsu31e	G-rich RNA sequence binding factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-55652941-3	chr12	55652840	55653040	+	863.8444210000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003719, intron 36 of 39)	intron (NM_001003719, intron 36 of 39)	54023.0	NM_020287	56856.0	Mm.114886	NM_020287	ENSMUSG00000045440	Insm2	Mlt1	insulinoma-associated 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115274570-2	chr11	115274388	115274588	+	773.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007997, intron 2 of 11)	intron (NM_007997, intron 2 of 11)	2481.0	NM_007997	14149.0	Mm.4719	NM_007997	ENSMUSG00000018861	Fdxr	AR	ferredoxin reductase	protein-coding	0.493725242413109	0.52755246696062	1.16379416456138	1.63719183744986	0.941552557055154	0.529990129811016	0.728247240024251	0.866182090930792	-1.29559923046448	0.423058373859959	0.900322118218157
Merged-chr16-85281906-2	chr16	85281812	85282012	+	608.25	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	-108205.0	NM_001198826	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	1.46487091475383	1.52394640911518	0.765644572265113	1.48959388780253	0.522102858722637	0.562464392302447	0.549614771414248	0.538439758268497	-4.8318233129938	0.00330707501270306	0.0487448230987854
Merged-chr5-64267487-1	chr5	64267387	64267587	+	885.0	f0_balb.idr	intron (NM_001289514, intron 5 of 18)	intron (NM_001289514, intron 5 of 18)	37130.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	-1.20406370813143	-1.56956373024278	-1.57884638916872	-1.58647144159385	-1.598104728449	-1.56755213932999	-1.57674499865798	-1.58510656085539	-1.70745470802464	0.626337835847419	1
Merged-chr3-54361115-4	chr3	54361021	54361221	+	839.3583369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001198766)	promoter-TSS (NM_001198766)	14.0	NM_015784	50706.0	Mm.236067	NM_015784	ENSMUSG00000027750	Postn	A630052E07Rik|AI747096|OSF-2|Osf2|PLF|PN	periostin, osteoblast specific factor	protein-coding	1.23386240021331	1.51924963020169	0.839663865528842	1.52238784369707	1.24399693708447	1.4001077448337	0.842422833763766	1.42571904591595	-0.246737443259755	0.853306471790675	0.998431161219273
Merged-chr11-11711318-2	chr11	11711218	11711418	+	969.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301865, intron 3 of 6)	CT-rich|Low_complexity|Low_complexity	21141.0	NM_001301863	22778.0	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-111792629-3	chr13	111792532	111792732	+	708.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011945, intron 1 of 19)	intron (NM_011945, intron 1 of 19)	16361.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-123887807-3	chr2	123887658	123887858	+	922.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-202211.0	NM_001290997	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-53249115-2	chr15	53249030	53249230	+	602.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010162, intron 1 of 10)	MTEa|LTR|ERVL-MaLR	97053.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-6478053-2	chr2	6477953	6478153	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	125317.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-14954432-2	chr17	14954332	14954532	+	602.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_024250, intron 6 of 11)	intron (NM_024250, intron 6 of 11)	6828.0	NM_001360983	72057.0	Mm.440085	NM_024250	ENSMUSG00000023883	Phf10	1810055P05Rik|AV024533	PHD finger protein 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-51742986-4	chr13	51742887	51743087	+	856.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001281880, intron 2 of 16)	intron (NM_001281880, intron 2 of 16)	50760.0	NM_001281880	20354.0	Mm.33903	NM_013660	ENSMUSG00000021451	Sema4d	CD100|Semacl2|Semaj|Semcl2|coll-4	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-76416599-4	chr16	76416498	76416698	+	610.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TTTTG)n|Simple_repeat|Simple_repeat	-42771.0	NM_001358238	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-61363369-2	chr9	61363269	61363469	+	848.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB2|LINE|L1	-8997.0	NM_001083928	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-62837398-4	chr14	62837318	62837518	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175546)	promoter-TSS (NM_175546)	-272.0	NM_175546	268752.0	Mm.1960	NM_175546	ENSMUSG00000014547	Wdfy2	5830485M08|B130024L21Rik|ProF|ZFYVE22	WD repeat and FYVE domain containing 2	protein-coding	6.54530843449277	6.24417363740981	6.81606789406595	6.77868236281516	6.52958902711498	6.34111830511	6.81851948966901	6.81502909493353	0.0272432442693553	0.89450274719046	0.998431161219273
Merged-chr2-73559856-2	chr2	73559756	73559956	+	627.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	20482.0	NM_007389	11435.0	Mm.4583	NM_007389	ENSMUSG00000027107	Chrna1	AI385656|AI608266|Achr-1|Acra	cholinergic receptor, nicotinic, alpha polypeptide 1 (muscle)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-84955188-2	chr18	84955088	84955288	+	772.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_015798, intron 1 of 9)	intron (NM_015798, intron 1 of 9)	-3664.0	NM_025969	67105.0	Mm.250617	NM_025969	ENSMUSG00000024645	Timm21	1700034H14Rik|2700002I20Rik	translocase of inner mitochondrial membrane 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-78158070-2	chr11	78157970	78158170	+	886.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001346762)	TTS (NM_001346762)	7480.0	NM_009423	22032.0	Mm.390418	NM_009423	ENSMUSG00000017386	Traf4	A530032M13Rik|CART1|msp2	TNF receptor associated factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-60746356-1	chr1	60746256	60746456	+	564.0	f0_balb.idr	promoter-TSS (NM_007642)	promoter-TSS (NM_007642)	-32.0	NM_007642	12487.0	Mm.255003	NM_007642	ENSMUSG00000026012	Cd28	-	CD28 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-140465783-3	chr1	140465694	140465894	+	720.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081027, intron 13 of 27)	MLT1F|LTR|ERVL-MaLR	190608.0	NR_040604	75910.0	Mm.483845	NR_040604	ENSMUSG00000102368	4930590L20Rik	-	RIKEN cDNA 4930590L20 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-37491827-4	chr1	37491675	37491875	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173870, intron 4 of 15)	intron (NM_173870, intron 4 of 15)	-3170.0	NR_024017	77633.0	Mm.483177	NR_024017	ENSMUSG00000103948	4930594C11Rik	-	G1 to S phase transition pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-51057617-3	chr14	51057517	51057717	+	738.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001011875)	promoter-TSS (NM_001011875)	-375.0	NM_001011875	497106.0	Mm.379740	NM_001011875	ENSMUSG00000068407	Rnase12	Rai1	ribonuclease, RNase A family, 12 (non-active)	protein-coding	0.0242264664639843	-0.4188191567086	0.126733091547749	-0.425391210760627	-0.289165758095658	-0.417979915784049	-0.421715904688254	-0.424892658785167	-2.59314664130525	0.309564393708191	1
Merged-chr6-126853236-4	chr6	126853128	126853328	+	988.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_009650, exon 1 of 6)	5' UTR (NM_009650, exon 1 of 6)	130.0	NM_009650	11642.0	Mm.87748	NM_009650	ENSMUSG00000030344	Akap3	Prka3	A kinase (PRKA) anchor protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-11550306-4	chr4	11550214	11550414	+	895.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001347055, exon 24 of 24)	3' UTR (NM_001347055, exon 24 of 24)	-8606.0	NM_001039556	623474.0	Mm.491200	NM_177285	ENSMUSG00000078773	Rad54b	E130016E03Rik	RAD54 homolog B (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31397854-3	chr14	31397791	31397991	+	949.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347585, intron 2 of 7)	intron (NM_001347585, intron 2 of 7)	19786.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-116683240-4	chr4	116683142	116683342	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2357.0	NM_011034	18477.0	Mm.30929	NM_011034	ENSMUSG00000028691	Prdx1	MSP23|NkefA|OSF-3|OSF3|PAG|Paga|PrdxI|PrxI|TDX2|TPxA|Tdpx2|prx1	peroxiredoxin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-14611346-4	chr3	14611247	14611447	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347206)	promoter-TSS (NM_001347206)	-91.0	NM_001099674	69126.0	Mm.389020	NM_001099674	ENSMUSG00000078784	1810022K09Rik	AI746582|AL023036	RIKEN cDNA 1810022K09 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80787530-3	chr7	80787414	80787614	+	859.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016721, intron 2 of 37)	LTRIS_Mus|LTR|ERV1	15817.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-113703892-2	chr11	113703792	113703992	+	934.2999880000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_029794, intron 3 of 6)	intron (NM_029794, intron 3 of 6)	5634.0	NM_026682	52670.0	Mm.229207	NM_026682	ENSMUSG00000018727	Cpsf4l	0610010C04Rik|1500000C01Rik|D11Ertd636e	cleavage and polyadenylation specific factor 4-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-67427141-2	chr5	67427041	67427241	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001164806, exon 1 of 5)	exon (NM_001164806, exon 1 of 5)	658.0	NM_001164806	666938.0	Mm.101339	NM_001164806	ENSMUSG00000092060	Bend4	D330027G24Rik|EG666938	BEN domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-88500229-4	chr6	88500068	88500268	+	805.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	18632.0	NM_016906	53421.0	Mm.28375	NM_016906	ENSMUSG00000030082	Sec61a1	AA408394|AA410007|Sec61a	Sec61 alpha 1 subunit (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-97659577-4	chr1	97659477	97659677	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133825, intron 1 of 2)	intron (NM_133825, intron 1 of 2)	2099.0	NM_001355074	52392.0	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-128305093-4	chr7	128304980	128305180	+	786.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6949.0	NM_145590	233913.0	Mm.220880	NM_145590	ENSMUSG00000030780	BC017158	-	cDNA sequence BC017158	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-51639026-4	chr13	51638897	51639097	+	993.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR6_Mm|LTR|ERV1	-6235.0	NM_025415	66197.0	Mm.222228	NM_025415	ENSMUSG00000062248	Cks2	1110038L14Rik|CKSHS2	CDC28 protein kinase regulatory subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-84103938-2	chr7	84103838	84104038	+	975.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-17433.0	NM_030728	80982.0	Mm.160389	NM_030728	ENSMUSG00000052353	Cemip	12H19.01.T7|6330404C01Rik|9930013L23Rik|AY007814|Kiaa1199	cell migration inducing protein, hyaluronan binding	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-107399533-4	chr1	107399420	107399620	+	996.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23169.0	NM_027548	116872.0	Mm.66015	NM_027548	ENSMUSG00000067001	Serpinb7	4631416M05Rik|megsin|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-9735017-4	chr18	9734900	9735100	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130449, intron 2 of 9)	intron (NM_130449, intron 2 of 9)	27352.0	NM_130449	140792.0	Mm.218571	NM_130449	ENSMUSG00000036103	Colec12	CL-P1|SRCL|Scara4	collectin sub-family member 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-66859673-4	chr1	66859569	66859769	+	760.104187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007381, intron 1 of 10)	RMER16|LTR|ERVK	3640.0	NM_007381	11363.0	Mm.2445	NM_007381	ENSMUSG00000026003	Acadl	AA960361|AU018452|C79855|LCAD	acyl-Coenzyme A dehydrogenase, long-chain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-152810366-4	chr2	152810288	152810488	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009743, intron 2 of 2)	intron (NM_009743, intron 2 of 2)	18101.0	NR_149254	12048.0	Mm.238213	NM_009743	ENSMUSG00000007659	Bcl2l1	Bcl(X)L|Bcl-XL|Bcl2l|BclX|bcl-x|bcl2-L-1	BCL2-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-39781130-4	chr6	39781017	39781217	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29819.0	NM_010270	14548.0	Mm.377071	NM_010270	ENSMUSG00000029918	Mrps33	AI841153|CGI-139|Gdap3|MRP-S33|PTD003	mitochondrial ribosomal protein S33	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-152602963-2	chr3	152602863	152603063	+	723.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355635, intron 6 of 8)	intron (NM_001355635, intron 6 of 8)	-63950.0	NR_040386	99542.0	Mm.394921	NR_040386	ENSMUSG00000097745	AI115009	-	expressed sequence AI115009	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-96482214-2	chr9	96482114	96482314	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB3|LINE|L1	-3539.0	NM_001311135	19823.0	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80994801-2	chr7	80994701	80994901	+	675.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_178707, intron 1 of 9)	intron (NM_178707, intron 1 of 9)	1117.0	NM_178707	233410.0	Mm.29525	NM_178707	ENSMUSG00000005621	Zfp592	A730014M16Rik|Znf592	zinc finger protein 592	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-36990762-1	chr17	36990662	36990862	+	803.0	f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1258.0	NM_001115075	240095.0	Mm.246609	NM_001115075	ENSMUSG00000024459	H2-M5	CRW2|D130003B22Rik|H-2M5	histocompatibility 2, M region locus 5	protein-coding	-0.318363864794719	-0.478558166959295	-0.664053220472716	-0.666343871648933	-0.669563804330513	-0.660394651569181	-0.663396564836251	-0.260228101948032	-0.295947758584291	0.914626163017194	1
Merged-chr6-108426811-5	chr6	108426562	108426762	+	931.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 40 of 61)	intron (NM_010585, intron 40 of 61)	-63081.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-145730688-4	chr2	145730536	145730736	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033220, intron 2 of 3)	intron (NR_033220, intron 2 of 3)	29441.0	NR_033220	408057.0	Mm.486711	NR_033220	ENSMUSG00000087594	BC039771	-	cDNA sequence BC039771	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-53769043-4	chr11	53769008	53769208	+	921.68335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008390)	promoter-TSS (NM_008390)	-906.0	NM_001159393	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72550024-4	chr6	72549913	72550113	+	800.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271395, intron 1 of 9)	intron (NM_001271395, intron 1 of 9)	366.0	NM_001271395	12332.0	Mm.18626	NM_007599	ENSMUSG00000056737	Capg	gCap39|mbh1	capping protein (actin filament), gelsolin-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-27470798-1	chr7	27470698	27470898	+	581.0	f1_balb.idr	Intergenic	Intergenic	-3042.0	NM_133210	170742.0	Mm.200120	NM_133210	ENSMUSG00000055200	Sertad3	AW124805|D1Mgi51|Rbt1|Sei3	SERTA domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-63108902-2	chr1	63108802	63109002	+	643.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114609, intron 1 of 11)	B1F|SINE|Alu	5365.0	NM_001081436	227195.0	Mm.74718	NM_001081436	ENSMUSG00000040865	Ino80d	7330405I11|A430093A21Rik|BC010584	INO80 complex subunit D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70618519-1	chr8	70618419	70618619	+	1000.0	f1_balb.idr	intron (NM_153074, intron 2 of 2)	intron (NM_153074, intron 2 of 2)	1675.0	NM_153074	211228.0	Mm.132939	NM_153074	ENSMUSG00000049988	Lrrc25	Mapa	leucine rich repeat containing 25	protein-coding	6.27335085679493	5.78257005254426	6.17404223738605	6.3167788648063	6.10574169663026	5.70360435315051	5.88177297642831	6.67172801360798	-0.0105031156019725	0.967223925297122	0.998431161219273
Merged-chr12-69363316-1	chr12	69363216	69363416	+	577.0	f1_balb.idr	Intergenic	Intergenic	-6140.0	NM_025441	66244.0	Mm.46705	NM_025441	ENSMUSG00000020982	Nemf	1500011I12Rik|4933405E14Rik|Sdccag1	nuclear export mediator factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-46215530-4	chr11	46215448	46215648	+	779.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252459, intron 26 of 30)	MER20|DNA|hAT-Charlie	-20009.0	NM_177075	320116.0	Mm.39600	NM_177075	ENSMUSG00000048721	Fndc9	C030019I05Rik	fibronectin type III domain containing 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-121923659-3	chr5	121923559	121923759	+	797.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007804, intron 3 of 22)	PB1D10|SINE|Alu	74662.0	NM_001359949	231717.0	Mm.12654	NM_175474	ENSMUSG00000044134	Fam109a	A230106M15Rik|AU017694|IPIP27A|Ses1	family with sequence similarity 109, member A	protein-coding	3.07445552176356	2.57587313579691	2.87456501395955	2.79399613142035	2.31255277514256	3.10397251968531	3.34931020967784	3.45220648379393	0.496837859950004	0.456817841066535	0.919264728457769
Merged-chr14-46713474-1	chr14	46713374	46713574	+	550.0	f1_balb.idr	Intergenic	Intergenic	-39699.0	NR_131909	328385.0	Mm.271545	NR_131909	ENSMUSG00000115015	D330046F09Rik	Gm808	RIKEN cDNA D330046F09 gene	ncRNA	0.168348676103399	0.193302214955026	0.185215749359089	0.773519308493834	0.169930756577161	0.750155156544172	0.187006387388317	1.15011971810088	1.57112825455654	0.445413372367145	1
Merged-chr3-103393063-2	chr3	103392963	103393163	+	939.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	113770.0	NM_053170	94093.0	Mm.195036	NM_053170	ENSMUSG00000033014	Trim33	8030451N04Rik|AI413936|Ecto|Tif1g	tripartite motif-containing 33	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71625287-4	chr8	71625204	71625404	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_146211)	TTS (NM_146211)	5802.0	NR_106035	102466799.0		NR_106035	ENSMUSG00000098976	Mir6769b	Gm27546|mmu-mir-6769b	microRNA 6769b	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-124605054-2	chr2	124604954	124605154	+	753.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290997, intron 5 of 20)	intron (NM_001290997, intron 5 of 20)	-5242.0	NM_199238	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-52175490-3	chr9	52175339	52175539	+	851.7000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	polypurine|Low_complexity|Low_complexity	-7328.0	NM_001162921	244871.0	Mm.295686	NM_001162921	ENSMUSG00000035164	Zc3h12c	A230108E06|C230027N18Rik|mKIAA1726	zinc finger CCCH type containing 12C	protein-coding	0.921091124834455	0.680968996675412	0.500307192286327	0.642855570984283	0.930747016402872	0.685811878410949	1.03142407234691	0.645759295873945	0.85245964859629	0.581354820853463	1
Merged-chr2-122366350-2	chr2	122366256	122366456	+	732.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013829, intron 1 of 5)	intron (NM_001013829, intron 1 of 5)	2562.0	NM_001013829	435684.0	Mm.458215	NM_001013829	ENSMUSG00000033256	Shf	-	Src homology 2 domain containing F	protein-coding	0.0819702776421754	0.728746470714994	-0.0660848830803838	-0.0712318797633751	-0.0785642819379653	0.741968931351632	-0.0646196581297205	-0.0703302663335991	-0.152069918342072	0.945629911893445	1
Merged-chr8-106576010-3	chr8	106575917	106576117	+	783.111145	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11126.0	NR_045470	68692.0	Mm.416843	NR_045470	ENSMUSG00000099139	1110028F18Rik	-	RIKEN cDNA 1110028F18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-35251088-2	chr18	35250988	35251188	+	884.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009818, intron 15 of 17)	intron (NM_009818, intron 15 of 17)	-36064.0	NM_178005	107065.0	Mm.39900	NM_178005	ENSMUSG00000071862	Lrrtm2	AI851755|BB129880|C630011A14Rik|mKIAA0416	leucine rich repeat transmembrane neuronal 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-92911694-2	chr8	92911594	92911794	+	592.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357375, intron 11 of 12)	intron (NM_001357375, intron 11 of 12)	10299.0	NM_027112	69543.0	Mm.440514	NM_027112	ENSMUSG00000078144	Capns2	2310005G05Rik|30K-2	calpain, small subunit 2	protein-coding	0.485814564391938	0.517027040815387	1.34515099862782	1.09265095149863	0.919690525675906	0.51928756398961	0.509165801182725	1.30171230663898	-0.270092551131484	0.875915401038525	0.998431161219273
Merged-chr13-23517224-4	chr13	23517123	23517323	+	943.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	tRNA-Gly-GGY|tRNA|tRNA	-13821.0	NM_153173	69386.0	Mm.158272	NM_153173	ENSMUSG00000060981	Hist1h4h	1700024H08Rik	histone cluster 1, H4h	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-40944114-3	chr15	40944013	40944213	+	809.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356998, intron 3 of 6)	intron (NM_001356998, intron 3 of 6)	-229588.0	NR_151516	100418302.0		NR_151516		4930555K19Rik	-	leucine rich repeat and sterile alpha motif containing 1 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-12834986-10	chr7	12834910	12835110	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001360576, exon 1 of 8)	5' UTR (NM_001360576, exon 1 of 8)	249.0	NM_001360576	65020.0	Mm.292297	NM_022981	ENSMUSG00000058638	Zfp110	2900024E01Rik|N28112|NRIF|Nrif1	zinc finger protein 110	protein-coding	3.38305728658872	3.02721126515951	3.75408054585604	4.24372912809248	4.28764310911712	3.98704258158449	3.61826156466019	4.55799200344787	0.666286573681423	0.184311570599672	0.659825155101641
Merged-chr2-129572299-2	chr2	129572196	129572396	+	679.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20543.0	NM_001291020	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	0.278494872667736	0.0508506242486578	0.462486632754716	0.319342247234836	0.0379084138862076	0.0518797319137112	0.211389441717474	0.436667610434452	-0.736039533364301	0.711504201581956	1
Merged-chr17-24960362-1	chr17	24960262	24960462	+	1000.0	f1_c57bl6.idr	TTS (NM_020608)	TTS (NM_020608)	261.0	NM_198937	52009.0	Mm.371601	NM_198937	ENSMUSG00000024165	Jpt2	2810430B18Rik|AL022629|C16orf34|D17Ertd441e|Hn1l	Jupiter microtubule associated homolog 2	protein-coding	0.728954040193024	0.590682537694701	0.578303544426284	0.768300667996103	1.63251995108268	1.44053370950902	0.581053269982038	1.31985619037376	3.31740630977622	0.043408701820961	0.299041640675149
Merged-chr7-107665319-3	chr7	107665165	107665365	+	838.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357436)	promoter-TSS (NM_001357436)	-213.0	NM_001357437	19024.0	Mm.2817	NM_008905	ENSMUSG00000036528	Ppfibp2	Cclp1	PTPRF interacting protein, binding protein 2 (liprin beta 2)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134425665-4	chr6	134425551	134425751	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355686, intron 2 of 5)	intron (NM_001355686, intron 2 of 5)	11223.0	NM_001355686	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	5.41818661040662	5.01510992509235	5.17555966983355	5.78534600480545	5.18550096811367	5.65598819180277	5.43895393124529	5.58857932897252	0.0997528351775703	0.731413726692126	0.998431161219273
Merged-chr2-144004943-4	chr2	144004845	144005045	+	981.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133626, intron 1 of 2)	intron (NM_133626, intron 1 of 2)	6318.0	NM_133626	81910.0	Mm.13705	NM_024281	ENSMUSG00000027422	Rrbp1	1700087N07Rik|5730465C04Rik|ES/130|mKIAA1398|mRRp0|mRRp1.8|mRRp10|mRRp15a|mRRp15b|mRRp16.8|mRRp2|mRRp41|mRRp47|mRRp5.4|p180	ribosome binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-31294846-1	chr5	31294746	31294946	+	551.0	f1_balb.idr	intron (NM_001356946, intron 3 of 7)	intron (NM_001356946, intron 3 of 7)	1086.0	NM_001356945	64339.0	Mm.292544	NM_022424	ENSMUSG00000038552	Fndc4	2810430J06Rik|6330410H20Rik|AB030187|AI838506|AW487863|FRCP1|Fnmp1	fibronectin type III domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-122945369-4	chr7	122945267	122945467	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25092.0	NR_045614	73951.0	Mm.389936	NR_045614		4930413G21Rik	-	RIKEN cDNA 4930413G21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-115617321-3	chr12	115617405	115617605	+	924.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	78289.0	NR_105810	102465205.0		NR_105810	ENSMUSG00000098336	Mir6388	Gm27925|mmu-mir-6388	microRNA 6388	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44498098-2	chr7	44497998	44498198	+	692.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357651, intron 2 of 3)	intron (NM_001357651, intron 2 of 3)	1510.0	NM_028169	75538.0	Mm.258841	NM_028169	ENSMUSG00000051113	Fam71e1	0610007G24Rik|1700021N13Rik|1700021P22Rik|GARI-L5	family with sequence similarity 71, member E1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91847069-2	chr16	91846969	91847169	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110275, intron 19 of 28)	intron (NM_001110275, intron 19 of 28)	84561.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-195037203-2	chr1	195037103	195037303	+	591.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029745)	promoter-TSS (NR_029745)	163.0	NR_029809	723963.0		NR_029809	ENSMUSG00000065412	Mir29b-2	Mirn29b-2|mir-29b-2	microRNA 29b-2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-17694446-8	chr6	17694241	17694441	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001289626, exon 1 of 15)	exon (NM_001289626, exon 1 of 15)	347.0	NM_001289625	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	6.01665388211605	5.85688168189144	5.27438277142833	5.78390614013852	5.43056696223626	5.21435500807822	4.2796125045475	5.23093569754697	-0.745849580572882	0.0173799493386183	0.161754337618325
Merged-chr15-51083314-1	chr15	51083214	51083414	+	638.0	f1_c57bl6.idr	Intergenic	Intergenic	-193273.0	NM_032000	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	-1.20406370813143	-1.56956373024278	-1.57884638916872	-1.58647144159385	-1.598104728449	-1.56755213932999	-1.57674499865798	-1.58510656085539	-1.70745470802464	0.626337835847419	1
Merged-chr11-53754740-2	chr11	53754640	53754840	+	566.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	8914.0	NR_106131	102465772.0		NR_106131	ENSMUSG00000099153	Mir7671	Gm27802|mmu-mir-7671	microRNA 7671	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115051021-2	chr5	115050932	115051132	+	737.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029012, intron 1 of 10)	intron (NM_029012, intron 1 of 10)	39508.0	NM_029012	74585.0	Mm.355894	NM_029012	ENSMUSG00000029550	Sppl3	4833416I09Rik|Psl4|Usmg3	signal peptide peptidase 3	protein-coding	1.70244480551783	2.98069529715753	2.87724496652082	1.94963084860833	1.5532727633111	1.51589887172765	1.86908555759256	1.63305372402794	-2.1195601293542	0.0278621487023604	0.225262843753989
Merged-chr14-19950952-4	chr14	19950836	19951036	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285909, intron 3 of 5)	ORR1C1|LTR|ERVL-MaLR	25757.0	NM_001285911	14702.0	Mm.41737	NM_010315	ENSMUSG00000043004	Gng2	-	guanine nucleotide binding protein (G protein), gamma 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100232878-2	chr7	100232778	100232978	+	935.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027629, intron 1 of 13)	intron (NM_027629, intron 1 of 13)	5271.0	NM_027629	70974.0	Mm.440524	NM_027629	ENSMUSG00000030729	Pgm2l1	4931406N15Rik|AI553438|BM32A	phosphoglucomutase 2-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-22759899-4	chr11	22759793	22759993	+	902.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	99842.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-84271754-2	chr17	84271654	84271854	+	642.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_183021, intron 30 of 37)	intron (NM_183021, intron 30 of 37)	-83807.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94505536-4	chr10	94505468	94505668	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 2 of 4)	intron (NM_001359762, intron 2 of 4)	-9289.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-84143202-2	chr17	84143102	84143302	+	663.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44745.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-44053111-2	chr17	44053011	44053211	+	844.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25691.0	NM_001168620	83965.0	Mm.30145	NM_032003	ENSMUSG00000023960	Enpp5	AW061004|D17Abb1e|E-NPP 5	ectonucleotide pyrophosphatase/phosphodiesterase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-52988063-4	chr2	52987948	52988148	+	937.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	130180.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-92331354-1	chr5	92331254	92331454	+	543.0	f1_balb.idr	promoter-TSS (NM_001310664)	promoter-TSS (NM_001310664)	-473.0	NM_001310664	109979.0	Mm.263514	NM_181728	ENSMUSG00000034842	Art3	4930569O04Rik|ARTC3	ADP-ribosyltransferase 3	protein-coding	0.708091856247469	1.40861267502854	0.284565191991449	0.277085426524496	0.442086736100903	0.296272847273041	0.953311915152001	0.278398416388297	-1.20056343833702	0.514335301031885	1
Merged-chr7-45898343-3	chr7	45898249	45898449	+	863.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144801, intron 2 of 7)	intron (NM_144801, intron 2 of 7)	1280.0	NM_144801	70209.0	Mm.163766	NM_144801	ENSMUSG00000002781	Tmem143	2310076O21Rik|AI481604	transmembrane protein 143	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117967435-2	chr11	117967335	117967535	+	895.75	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007707, exon 2 of 2)	3' UTR (NM_007707, exon 2 of 2)	1931.0	NM_007707	12702.0	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4969627-4	chr16	4969526	4969726	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_073370, intron 4 of 8)	intron (NR_073370, intron 4 of 8)	5338.0	NM_001271586	74684.0	Mm.374835	NM_001271586	ENSMUSG00000022543	4930451G09Rik	-	RIKEN cDNA 4930451G09 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-137558994-4	chr6	137558891	137559091	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271588, intron 1 of 20)	intron (NM_001271588, intron 1 of 20)	12018.0	NM_001271595	13860.0	Mm.235346	NM_007945	ENSMUSG00000015766	Eps8	AW261790	epidermal growth factor receptor pathway substrate 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-53850018-1	chr18	53849918	53850118	+	893.0	f0_balb.idr	Intergenic	L1MB4|LINE|L1	-12095.0	NM_152809	70425.0	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-31716818-2	chr2	31716718	31716918	+	738.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001283047, intron 2 of 11)	intron (NM_001283047, intron 2 of 11)	28281.0	NM_001283046	11350.0	Mm.1318	NM_009594	ENSMUSG00000026842	Abl1	AI325092|Abl|E430008G22Rik|c-Abl	c-abl oncogene 1, non-receptor tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-98835198-2	chr7	98835098	98835298	+	805.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285792)	promoter-TSS (NM_001285792)	86.0	NM_001285792	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-40047612-2	chr12	40047512	40047712	+	690.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9625.0	NM_001039515	11861.0	Mm.12723	NM_007487	ENSMUSG00000047446	Arl4a	AI467555|Arl4	ADP-ribosylation factor-like 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-70386369-4	chr16	70386296	70386496	+	984.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028803, intron 2 of 15)	MLTR14|LTR|ERV1	72447.0	NM_028803	74185.0	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	3.03394933364541	3.49432248570406	4.31341996853634	2.24166170774681	2.56688445975866	3.24965116784634	2.50961429221507	2.70853741223021	-1.148590041947	0.101209396423546	0.494828988708111
Merged-chr10-98878964-3	chr10	98878804	98879004	+	896.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35738.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-39771844-3	chr10	39771750	39771950	+	900.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011264, intron 1 of 31)	intron (NM_011264, intron 1 of 31)	39690.0	NM_011264	19714.0	Mm.439723	NM_011264	ENSMUSG00000019841	Rev3l	Rev|Rev3|Sez4	REV3 like, DNA directed polymerase zeta catalytic subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-170907932-4	chr1	170907800	170908000	+	802.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001029984, exon 5 of 6)	exon (NM_001029984, exon 5 of 6)	5041.0	NM_001029984	435653.0	Mm.337931	NM_001029984	ENSMUSG00000070524	Fcrlb	FREB-2|FREB2|FcRL2|Fcrlm2|Fcry|mFCRL2	Fc receptor-like B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115545059-1	chr5	115544959	115545159	+	1000.0	f1_balb.idr	intron (NM_011223, intron 3 of 10)	intron (NM_011223, intron 3 of 10)	-14408.0	NM_007475	11837.0	Mm.5286	NM_007475	ENSMUSG00000067274	Rplp0	36B4|Arbp|L10E	ribosomal protein, large, P0	protein-coding	-1.52696403314699	-1.49523967873556	-1.5048333853602	-1.51271394162622	-1.52473704212565	-1.49316068248889	-1.50266158046844	-1.06847079017215	2.01069003169785	0.564432837776867	1
Merged-chr7-144979982-2	chr7	144979863	144980063	+	621.0	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-40038.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	1.24815803522956	1.20110031713033	1.48555721607821	0.95345101279511	1.59806619751015	1.54896520444238	1.74003134452025	1.78128435455977	1.68763212266014	0.157703671298592	0.614726656348444
Merged-chr14-103481764-4	chr14	103481659	103481859	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31582.0	NM_022886	64929.0	Mm.244003	NM_022886	ENSMUSG00000022123	Scel	9230114I02Rik	sciellin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-63423590-2	chr4	63423490	63423690	+	589.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001008792, intron 7 of 11)	(TG)n|Simple_repeat|Simple_repeat	-20145.0	NM_001045514	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-73441353-4	chr14	73441258	73441458	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56069.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127558971-5	chr10	127558734	127558934	+	873.2666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008512, exon 46 of 89)	exon (NM_008512, exon 46 of 89)	-24275.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	-0.560679656686537	-0.695500244109305	-0.698946746723096	-0.534426931608464	-0.70535730126698	-0.694723057751723	-0.00927327144638201	-0.701140118059293	1.49764766585375	0.583199414979341	1
Merged-chr5-145119666-4	chr5	145119571	145119771	+	922.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023142, intron 1 of 9)	intron (NM_023142, intron 1 of 9)	5415.0	NM_023142	11867.0	Mm.30010	NM_023142	ENSMUSG00000029622	Arpc1b	41kDa|AA408064|AA408534|AA571392|AF007010|AW208418|L72|SOP2Hs|p41-ARC	actin related protein 2/3 complex, subunit 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-90020698-2	chr7	90020598	90020798	+	626.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8461.0	NR_110365	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166729210-2	chr2	166729110	166729310	+	785.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER58A|DNA|hAT-Charlie	-15378.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-62974452-1	chr8	62974352	62974552	+	712.0	f1_balb.idr	intron (NM_023689, intron 3 of 11)	Lx|LINE|L1	23107.0	NM_001361918	72902.0	Mm.334552	NM_023689	ENSMUSG00000054162	Spock3	2900045C01Rik|AI428471|mKIAA4039	sparc/osteonectin, cwcv and kazal-like domains proteoglycan 3	protein-coding	-0.595776955477212	-0.204396068989882	-0.587120719044514	-0.590367622110127	-0.594970747066901	0.192417417376283	-0.586194102415081	-0.589799774158049	1.48401937123868	0.596759986826361	1
Merged-chr2-132602816-4	chr2	132602705	132602905	+	841.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033469, intron 1 of 3)	MTD|LTR|ERVL-MaLR	4609.0	NR_033469	767814.0	Mm.371752	NR_033468	ENSMUSG00000074783	AU019990	-	expressed sequence AU019990	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-174487927-1	chr1	174487827	174488027	+	655.0	f0_balb.idr	Intergenic	RSINE1|SINE|B4	-13898.0	NM_019445	54418.0	Mm.330620	NM_019445	ENSMUSG00000028354	Fmn2	AU024104	formin 2	protein-coding	-1.10196567847608	-1.08028584652754	-0.917702588917093	-0.563040453510935	-1.10147851642621	-1.07784325022935	-1.08900578035492	-1.09834132469131	-2.70815443805545	0.396673806156447	1
Merged-chr5-32077355-4	chr5	32077275	32077475	+	752.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144541, intron 11 of 11)	intron (NM_144541, intron 11 of 11)	-59097.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-61679632-2	chr10	61679532	61679732	+	841.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358488)	promoter-TSS (NM_001358488)	-653.0	NM_001358488	20224.0	Mm.391794	NM_009120	ENSMUSG00000020088	Sar1a	1600019H17Rik|Sara|Sara1	secretion associated Ras related GTPase 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-8945643-1	chr11	8945543	8945743	+	670.0	f1_balb.idr	Intergenic	Intergenic	65548.0	NM_001303610	15574.0	Mm.42201	NM_008316	ENSMUSG00000020413	Hus1	-	HUS1 checkpoint clamp component	protein-coding	1.26322123582953	2.22898106204141	1.8224575542851	1.48968091353946	1.27089042724903	1.90119979071998	1.83688819197466	2.00231628278739	0.0764585595966596	0.94289289787546	0.998431161219273
Merged-chr2-34776065-4	chr2	34775977	34776177	+	846.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_022310, exon 8 of 8)	exon (NM_022310, exon 8 of 8)	3987.0	NM_022310	14828.0	Mm.330160	NM_022310	ENSMUSG00000026864	Hspa5	AL022860|AU019543|Bip|D2Wsu141e|D2Wsu17e|Grp78|Hsce70|SEZ-7|Sez7|baffled|mBiP	heat shock protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-110108265-4	chr5	110108171	110108371	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145147)	promoter-TSS (NM_145147)	-74.0	NM_145147	107999.0	Mm.86267	NM_145147	ENSMUSG00000033434	Gtpbp6	AV119224|Pgbpll|pgpl	GTP binding protein 6 (putative)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72345874-4	chr6	72345777	72345977	+	788.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138592)	promoter-TSS (NM_138592)	-702.0	NM_138592	28035.0	Mm.281900	NM_138592	ENSMUSG00000056305	Usp39	AA408960|AI894154|CGI-21|D6Wsu157e|SAD1	ubiquitin specific peptidase 39	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127738323-2	chr10	127738223	127738423	+	898.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-1215.0	NM_198035	320080.0	Mm.27258	NM_198035	ENSMUSG00000044617	Zbtb39	7030401O21Rik|mKIAA0352	zinc finger and BTB domain containing 39	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118252818-2	chr11	118252718	118252918	+	749.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-4226.0	NM_011180	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-107332597-2	chr3	107332497	107332697	+	677.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001045807, exon 1 of 2)	exon (NM_001045807, exon 1 of 2)	692.0	NM_001045807	229700.0	Mm.27966	NM_001045807	ENSMUSG00000048109	Rbm15	C230088J01Rik|mKIAA1438	RNA binding motif protein 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141292049-2	chr7	141291912	141292112	+	545.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007878)	promoter-TSS (NM_007878)	6.0	NM_007878	13491.0	Mm.41075	NM_007878	ENSMUSG00000025496	Drd4	AW125663|D4R|Drd-4	dopamine receptor D4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-106301410-4	chr4	106301316	106301516	+	795.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14797.0	NM_183225	329908.0	Mm.234544	NM_183225	ENSMUSG00000028514	Usp24	2700066K03Rik|2810030C21Rik|AI414051|B130021E18|C79851	ubiquitin specific peptidase 24	protein-coding	1.04420782266345	1.76473941315005	1.98416498585392	1.2584704476903	1.05091098782414	1.34891009131482	0.901758046341544	1.75594130485249	-0.8948245814467	0.475219939791381	0.927029054433838
Merged-chr10-60389705-4	chr10	60389575	60389775	+	893.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252635, intron 30 of 68)	intron (NM_001252635, intron 30 of 68)	-10051.0	NM_001164374	100302688.0	Mm.444135	NM_001164374	ENSMUSG00000090439	Gm17455	-	predicted gene, 17455	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128752256-2	chr2	128752156	128752356	+	836.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 6 of 18)	intron (NM_008587, intron 6 of 18)	53341.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-170589822-4	chr1	170589734	170589934	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001109985)	promoter-TSS (NM_001109985)	15.0	NM_001109985	70729.0	Mm.409310	NM_027528	ENSMUSG00000038473	Nos1ap	6330408P19Rik|Capon	nitric oxide synthase 1 (neuronal) adaptor protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-30698096-4	chr13	30698002	30698202	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134068, intron 4 of 7)	intron (NM_134068, intron 4 of 7)	38043.0	NM_134068	105352.0	Mm.289646	NM_134068	ENSMUSG00000069255	Dusp22	JKAP|JSP1|LMW-DSP2|MKPX	dual specificity phosphatase 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6518782-4	chr19	6518677	6518877	+	961.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205234, intron 21 of 22)	intron (NM_001205234, intron 21 of 22)	24293.0	NM_009203	20521.0	Mm.391146	NM_009203	ENSMUSG00000061742	Slc22a12	AI987855|OAT4L|Rst|Slc22al2|URAT1	solute carrier family 22 (organic anion/cation transporter), member 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-60709008-2	chr13	60708908	60709108	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 3 of 26)	intron (NM_134062, intron 3 of 26)	77356.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	0.704246393628143	1.50362684114988	0.738126035706972	1.94541490985322	1.19954391222592	1.00377054452543	0.741657314417716	1.7170036718912	-0.430377561805869	0.768961120962059	0.998431161219273
Merged-chr8-27030540-4	chr8	27030431	27030631	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153592, intron 6 of 11)	MTD|LTR|ERVL-MaLR	6732.0	NM_153592	244373.0	Mm.277699	NM_153592	ENSMUSG00000031483	Erlin2	BC036333|C87251|Spfh2	ER lipid raft associated 2	protein-coding	3.24086157282063	4.63155655913496	2.14858308074459	4.54702254995245	4.28070258690188	5.00253846289841	3.99405963777959	4.98956429774839	0.854328843627835	0.1301769019031	0.56520957866106
Merged-chr10-75052737-2	chr10	75052637	75052837	+	689.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001359271, exon 11 of 11)	3' UTR (NM_001359271, exon 11 of 11)	-8159.0	NM_001081412	110279.0	Mm.333722	NM_001081412	ENSMUSG00000009681	Bcr	5133400C09Rik|AI561783|AI853148|mKIAA3017	breakpoint cluster region	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135958471-2	chr5	135958379	135958579	+	748.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	15997.0	NM_001160366	109267.0	Mm.332750	NM_001160366	ENSMUSG00000029699	Ssc4d	C330016E03Rik|S4D-SRCRB|SRCRB-S4D|Srcrb4d	scavenger receptor cysteine rich family, 4 domains	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-97656948-2	chr3	97656848	97657048	+	823.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	-1264.0	NM_182997	108097.0	Mm.31175	NM_182997	ENSMUSG00000038205	Prkab2	5730553K21Rik|AW049591|BB124140	protein kinase, AMP-activated, beta 2 non-catalytic subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34377749-5	chr17	34377715	34377915	+	778.606689	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111094, intron 1 of 9)	intron (NM_001111094, intron 1 of 9)	683.0	NM_001111094	100038862.0	Mm.440426	NM_201405	ENSMUSG00000062638	Btnl1	Btnl3|Gm316|Gm33	butyrophilin-like 1	protein-coding	-1.17367364971587	-1.14665061133654	-1.15856004380685	-1.16834280623128	-1.17310571790619	-1.14406978763884	-0.42938571406771	-1.16659169643457	2.89727187181404	0.396361616615464	1
Merged-chr8-94913391-2	chr8	94913291	94913491	+	605.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001033533, exon 2 of 9)	exon (NM_001033533, exon 2 of 9)	4707.0	NM_001033533	234582.0	Mm.277871	NM_001033533	ENSMUSG00000063605	Ccdc102a	BC027663|Gm586	coiled-coil domain containing 102A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-76033595-3	chr11	76033486	76033686	+	724.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5804.0	NM_029658	76566.0	Mm.34131	NM_029658	ENSMUSG00000020846	Rflnb	1500005K14Rik|Fam101b|RefilinB|cfm	refilin B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100627722-2	chr11	100627622	100627822	+	605.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_028024)	TTS (NM_028024)	4767.0	NM_028024	71966.0	Mm.274734	NM_028024	ENSMUSG00000017837	Nkiras2	2410003M04Rik|4930527H08Rik|D630018G21Rik|KBRAS2	NFKB inhibitor interacting Ras-like protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-55458818-3	chr11	55458739	55458939	+	868.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009720, intron 1 of 3)	intron (NM_009720, intron 1 of 3)	2369.0	NM_009720	11927.0	Mm.217759	NM_009720	ENSMUSG00000018585	Atox1	AI256639|Atx1	antioxidant 1 copper chaperone	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-35067406-2	chr7	35067306	35067506	+	663.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10840.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-107104768-2	chr8	107104668	107104868	+	748.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-8223.0	NR_104410	21750.0	Mm.6402	NM_009353	ENSMUSG00000031921	Terf2	TRF2	telomeric repeat binding factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-84764042-3	chr12	84763833	84764033	+	709.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023409, intron 2 of 3)	URR1A|DNA|hAT-Charlie	9179.0	NM_023409	67963.0	Mm.282556	NM_023409	ENSMUSG00000021242	Npc2	2700012J19Rik|AA408070|AU045843|HE1	NPC intracellular cholesterol transporter 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-134557081-4	chr1	134556972	134557172	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-3106.0	NM_152895	75605.0	Mm.28995	NM_152895	ENSMUSG00000042207	Kdm5b	2010009J12Rik|2210016I17Rik|AW556288|D1Ertd202e|Jarid1b|PLU-1|PUT1|Plu1|RBBP2H1A|Rb-Bp2|mKIAA4034	lysine (K)-specific demethylase 5B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-26210224-4	chr11	26210141	26210341	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027973, intron 1 of 5)	CpG	335.0	NR_027973	70626.0	Mm.379180	NM_027486		5730522E02Rik	-	RIKEN cDNA 5730522E02 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117424131-2	chr8	117424031	117424231	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028941, intron 6 of 20)	RSINE1|SINE|B4	-28892.0	NR_106045	102466801.0		NR_106045	ENSMUSG00000099062	Mir7077	Gm27774|mmu-mir-7077	microRNA 7077	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-58524618-4	chr16	58524519	58524719	+	873.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357435)	promoter-TSS (NM_001357435)	-366.0	NM_001357434	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	1.13505519923995	1.13901006944032	1.2349047265004	0.925563545701926	1.14457672301808	1.4182990093349	1.24531972994478	0.754690545345064	0.242355056044799	0.856176543288546	0.998431161219273
Merged-chr6-145275547-1	chr6	145275447	145275647	+	557.0	f1_balb.idr	Intergenic	Intergenic	24995.0	NR_045598	100039495.0	Mm.121014	NR_045598	ENSMUSG00000086013	Gm15706	-	predicted gene 15706	ncRNA	1.52541923893119	3.28683981433106	2.25259625052183	2.3266962204653	1.53880640601664	3.23598334051266	3.20098161665834	2.33961362496054	0.459232374134173	0.60555188969804	0.974576632476413
Merged-chr18-64958314-4	chr18	64958237	64958437	+	976.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114386, intron 1 of 30)	intron (NM_001114386, intron 1 of 30)	-65190.0	NM_031881	83814.0	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	4.7906794926171	4.638347802373	5.84659492977962	4.77150872891982	3.44471958436179	4.50040078601533	3.56642262571476	5.07106168314082	-0.974154608505577	0.0352434756559563	0.265623778409378
Merged-chr18-46335147-4	chr18	46335052	46335252	+	813.520813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23224.0	NM_001160399	240261.0	Mm.329416	NM_001160399	ENSMUSG00000071855	Ccdc112	8430438M01Rik|AW108467	coiled-coil domain containing 112	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96770166-4	chr3	96770053	96770253	+	928.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026406, intron 3 of 8)	CT-rich|Low_complexity|Low_complexity	42542.0	NM_026406	67845.0	Mm.386792	NM_026406	ENSMUSG00000028098	Rnf115	2610028E05Rik|AU042696|Zfp364	ring finger protein 115	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-122725743-2	chr2	122725643	122725843	+	633.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1E1A|LTR|ERVL-MaLR	-12762.0	NM_019788	18457.0	Mm.268921	NM_019788	ENSMUSG00000005804	Bloc1s6	BLOC-1|Pldn|Stx13bp1|pa	biogenesis of lysosomal organelles complex-1, subunit 6, pallidin	protein-coding	-0.437007347665466	-0.797191490264241	-0.800211333297501	-0.802535497382973	-0.80581110115169	-0.794868846802553	-0.799545998340427	-0.269727996356238	0.669386369290816	0.825650091045202	1
Merged-chr18-4746289-2	chr18	4746189	4746389	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66197.0	NR_045881	100038439.0	Mm.387569	NR_045881	ENSMUSG00000097043	Gm10556	-	predicted gene 10556	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-24526995-3	chr5	24526847	24527047	+	829.972229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015739)	promoter-TSS (NM_015739)	-99.0	NM_015739	231044.0	Mm.246596	NM_015739	ENSMUSG00000067724	Gbx1	Gbx-1	gastrulation brain homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-38789174-4	chr16	38789068	38789268	+	852.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178924, intron 1 of 7)	intron (NM_178924, intron 1 of 7)	11035.0	NM_178924	22268.0	Mm.130793	NM_178924	ENSMUSG00000049436	Upk1b	AI413235|Tspan20|UPIb|Upk1	uroplakin 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-113733753-4	chr11	113733658	113733858	+	815.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163346, intron 1 of 1)	intron (NM_001163346, intron 1 of 1)	17402.0	NM_020006	56699.0	Mm.293378	NM_020006	ENSMUSG00000041598	Cdc42ep4	1500041M20Rik|Borg4|CEP4	CDC42 effector protein (Rho GTPase binding) 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-32239473-4	chr4	32239349	32239549	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-177986.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-99491248-3	chr9	99491158	99491358	+	908.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028768, intron 18 of 21)	intron (NM_028768, intron 18 of 21)	20837.0	NR_028123	69797.0	Mm.307159	NR_028123	ENSMUSG00000046242	1600029I14Rik	-	RIKEN cDNA 1600029I14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-57826206-4	chr14	57826073	57826273	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198605)	promoter-TSS (NM_198605)	-10.0	NM_198605	219114.0	Mm.30173	NM_198605	ENSMUSG00000021965	Ska3	F630043A04Rik	spindle and kinetochore associated complex subunit 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-28010884-6	chr19	28010765	28010965	+	930.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166414, intron 1 of 18)	L1M4b|LINE|L1	301.0	NM_011265	19726.0	Mm.313321	NM_011265	ENSMUSG00000040929	Rfx3	C230093O12Rik|MRFX3	regulatory factor X, 3 (influences HLA class II expression)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-110845301-4	chr12	110845204	110845404	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4275.0	NR_152102	66709.0	Mm.390504	NR_152102		4921507G05Rik	-	RIKEN cDNA 4921507G05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116202025-2	chr11	116201925	116202125	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027107, intron 1 of 3)	RSINE1|SINE|B4	-2980.0	NM_015729	11430.0	Mm.356689	NM_015729	ENSMUSG00000020777	Acox1	AOX|Acox|D130055E20Rik|Paox	acyl-Coenzyme A oxidase 1, palmitoyl	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-9006318-4	chr12	9006210	9006410	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172470, intron 14 of 27)	intron (NM_172470, intron 14 of 27)	-23687.0	NM_029321	75516.0	Mm.37581	NM_029321	ENSMUSG00000066637	Ttc32	1700013G20Rik	tetratricopeptide repeat domain 32	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47707059-2	chr17	47706959	47707159	+	663.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5063.0	NR_045913	100126242.0	Mm.392746	NR_045912	ENSMUSG00000086930	Frs3os	4930417B13Rik|Gm14873	fibroblast growth factor receptor substrate 3, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-49794530-3	chr7	49794454	49794654	+	732.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133740, intron 8 of 15)	intron (NM_133740, intron 8 of 15)	16196.0	NM_133740	71974.0	Mm.33202	NM_133740	ENSMUSG00000030505	Prmt3	2010005E20Rik|2410018A17Rik|AL033309|Hrmt1l3	protein arginine N-methyltransferase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-89644551-4	chr6	89644450	89644650	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153162, intron 1 of 15)	CpG	562.0	NM_001178059	232223.0	Mm.229332	NM_153162	ENSMUSG00000000811	Txnrd3	AI196535|TGR|TR2	thioredoxin reductase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140595538-2	chr5	140595438	140595638	+	675.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11803.0	NM_008494	16848.0	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-61285555-2	chr10	61285455	61285655	+	785.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12117.0	NM_001081127	237360.0	Mm.333252	NM_001081127	ENSMUSG00000059901	Adamts14	Adamts-14|TS14	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-52036147-2	chr11	52036047	52036247	+	575.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166653, intron 13 of 13)	intron (NM_001166653, intron 13 of 13)	31926.0	NM_001166653	213084.0	Mm.280557	NM_153785	ENSMUSG00000020389	Cdkl3	AI852479|B230379H01Rik	cyclin-dependent kinase-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-28261484-2	chr6	28261384	28261584	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001081678, exon 1 of 6)	5' UTR (NM_001081678, exon 1 of 6)	117.0	NM_001081678	627049.0	Mm.84441	NM_001081678	ENSMUSG00000039841	Zfp800	AA407452|Znf800	zinc finger protein 800	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4126733-2	chr19	4126633	4126833	+	688.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016666)	promoter-TSS (NM_016666)	773.0	NM_025889	66990.0	Mm.276255	NM_025889		Tmem134	2410001H17Rik|AI463452	transmembrane protein 134	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-59879392-4	chr13	59879305	59879505	+	938.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56258.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	4.07584272747061	4.530784931087	4.48522756604724	2.98729006237549	4.00976735202549	3.94560799722502	4.15599427038996	3.62001921387665	-0.265061246787142	0.589664509440113	0.968907675192219
Merged-chr19-5661169-4	chr19	5661067	5661267	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164568, intron 1 of 15)	intron (NM_001164568, intron 1 of 15)	2540.0	NM_001164482	20469.0	Mm.3072	NM_011379	ENSMUSG00000056917	Sipa1	Spa1	signal-induced proliferation associated gene 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-20879670-2	chr9	20879570	20879770	+	969.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145154)	promoter-TSS (NM_145154)	40.0	NM_145154	70726.0	Mm.34019	NM_145154	ENSMUSG00000038742	Angptl6	6330404E11Rik|AGF|ARP3|Arp5	angiopoietin-like 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-45754832-2	chr9	45754732	45754932	+	719.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	73806.0	NM_001081373	214552.0	Mm.260103	NM_172531	ENSMUSG00000043987	Cep164	AI450905|BC027092|D030051D21|mKIAA1052	centrosomal protein 164	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-120618662-2	chr5	120618562	120618762	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_028041, exon 4 of 20)	exon (NM_028041, exon 4 of 20)	5532.0	NM_028041	71990.0	Mm.24495	NM_028041	ENSMUSG00000029599	Ddx54	2410015A15Rik|AI414901|DP97	DEAD (Asp-Glu-Ala-Asp) box polypeptide 54	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129911603-3	chr2	129911469	129911669	+	922.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-100771.0	NM_009374	21818.0	Mm.2961	NM_009374	ENSMUSG00000027401	Tgm3	AI893889|TG E|TG(E)|TGE|TGase E|TGase-3|we	transglutaminase 3, E polypeptide	protein-coding	-1.23460850737911	-1.20778397121128	-0.764630119593346	-1.22720560894177	-1.23414887269344	-1.20547328650897	-1.04825763330377	-1.22563779064292	-1.35544360464281	0.683796689557226	1
Merged-chr4-129740607-1	chr4	129740507	129740707	+	552.0	f1_balb.idr	intron (NM_011317, intron 1 of 8)	RLTR26B_MM|LTR|ERVK	1696.0	NM_011317	20218.0	Mm.8256	NM_011317	ENSMUSG00000028790	Khdrbs1	Sam68|p62|p68	KH domain containing, RNA binding, signal transduction associated 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-105117746-1	chr13	105117646	105117846	+	1000.0	f0_balb.idr	intron (NM_025751, intron 5 of 7)	L1_Mur2|LINE|L1	35624.0	NM_025751	66763.0	Mm.109093	NM_025751	ENSMUSG00000021718	4933425L06Rik	-	RIKEN cDNA 4933425L06 gene	protein-coding	0.325112121647657	-0.00655211044696066	0.409930871729432	-0.01448398913916	0.333133485895904	0.328365039906296	-0.0100516963491658	-0.0138832662363217	-0.187063380085136	0.930494846620528	1
Merged-chr9-85749407-4	chr9	85749283	85749483	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081282)	promoter-TSS (NM_001081282)	-49.0	NM_175371	108837.0	Mm.22315	NM_175371	ENSMUSG00000035941	Ibtk	5430411K16Rik|AA409502|BTKI|mKIAA1417	inhibitor of Bruton agammaglobulinemia tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-46520789-4	chr17	46520740	46520940	+	910.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081335, exon 23 of 41)	exon (NM_001081335, exon 23 of 41)	24051.0	NM_207161	381101.0	Mm.35801	NM_207161	ENSMUSG00000040658	Dnph1	C76683|Rcl	2'-deoxynucleoside 5'-phosphate N-hydrolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-69189105-4	chr8	69189002	69189202	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-19944.0	NM_001013379	234358.0	Mm.334577	NM_001013379	ENSMUSG00000059897	Zfp930	-	zinc finger protein 930	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27687355-2	chr2	27687255	27687455	+	926.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011305, intron 1 of 9)	intron (NM_011305, intron 1 of 9)	10154.0	NM_011305	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-78558547-2	chr11	78558447	78558647	+	584.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-7812.0	NM_133706	69071.0	Mm.29431	NM_133706	ENSMUSG00000037278	Tmem97	1810014L12Rik|AI115531|AL022956|D11Bhm182e	transmembrane protein 97	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-33997071-1	chr17	33996971	33997171	+	736.0	f1_c57bl6.idr	exon (NM_001347346, exon 5 of 8)	exon (NM_001347346, exon 5 of 8)	3262.0	NM_001001892	14972.0	Mm.422886	NM_001001892	ENSMUSG00000061232	H2-K1	H-2K|H-2K(d)|H2-K|K-f	histocompatibility 2, K1, K region	protein-coding	3.563814242833	2.95952804311016	1.26951555084928	1.73630474930389	2.55567728154352	1.32344528147297	2.00703727489726	2.8673939468954	-0.74790555020087	0.458524317725741	0.919607527898796
Merged-chr14-30573624-2	chr14	30573524	30573724	+	659.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009388, exon 14 of 14)	3' UTR (NM_009388, exon 14 of 14)	1475.0	NR_037237	100526475.0		NR_037237	ENSMUSG00000093156	Mir3076	mir-3076|mmu-mir-3076	microRNA 3076	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-34189202-2	chr5	34189102	34189302	+	746.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1492.0	NM_010753	17122.0	Mm.259260	NM_010753	ENSMUSG00000037235	Mxd4	2810410A03Rik|Mad4|bHLHc12	Max dimerization protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-143107249-10	chr7	143107182	143107382	+	898.6749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008434)	promoter-TSS (NM_008434)	28.0	NM_008434	16535.0	Mm.439769	NM_008434	ENSMUSG00000009545	Kcnq1	AW559127|KVLQT1|Kcna9	potassium voltage-gated channel, subfamily Q, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-83277603-7	chr17	83277445	83277645	+	972.4285890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	62262.0	NM_134117	106522.0	Mm.311974	NM_134117	ENSMUSG00000024247	Pkdcc	AI115348|AW548124|Adtk1|ESTM17|MAd1|Sgk493|Vlk|X83346	protein kinase domain containing, cytoplasmic	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69035993-4	chr11	69035898	69036098	+	990.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001281465, intron 22 of 22)	intron (NM_001281465, intron 22 of 22)	-9639.0	NM_011496	20877.0	Mm.3488	NM_011496	ENSMUSG00000020897	Aurkb	AIM-1|AIRK2|AL022959|Aik2|Aim1|Ark2|AurB|IPL1|STK-1|Stk12|Stk5	aurora kinase B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-99619637-4	chr10	99619540	99619740	+	999.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038019, intron 1 of 2)	intron (NR_038019, intron 1 of 2)	10469.0	NR_038019	100504202.0	Mm.403801	NR_038019	ENSMUSG00000111962	Gm20110	-	predicted gene, 20110	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-105881975-3	chr4	105881897	105882097	+	780.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16C|LTR|ERVL	-359216.0	NR_151521	105244641.0	Mm.404914	NR_151521		Gm12724	-	predicted gene 12724	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-39735381-4	chr15	39735280	39735480	+	928.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10550.0	NM_001289506	75766.0	Mm.159563	NM_029422	ENSMUSG00000022303	Dcstamp	4833414I07Rik|DC-STAMP|FIND|Tm7sf4|mDC-STAMP	dendrocyte expressed seven transmembrane protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-82398721-4	chr8	82398629	82398829	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001254747, intron 1 of 7)	intron (NM_001254747, intron 1 of 7)	3857.0	NM_001254747	16168.0	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	3.85313942043689	4.66435691397309	4.9410393814323	4.58374717978297	3.94742244182951	3.5782525263102	5.01039238979958	5.12896236951581	0.0211898798514312	0.963072812027449	0.998431161219273
Merged-chr15-81355585-3	chr15	81355466	81355666	+	731.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011399, intron 1 of 8)	B3|SINE|B2	5199.0	NM_011399	20524.0	Mm.222536	NM_011399	ENSMUSG00000022404	Slc25a17	34kDa|47kDa|PMP34|Pmp47	solute carrier family 25 (mitochondrial carrier, peroxisomal membrane protein), member 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-116434928-3	chr12	116434827	116435027	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133762, intron 17 of 28)	intron (NM_133762, intron 17 of 28)	29525.0	NM_133762	76044.0	Mm.491196	NM_133762	ENSMUSG00000042029	Ncapg2	5830426I05Rik|Luzp5|Mtb|mCAP-G2	non-SMC condensin II complex, subunit G2	protein-coding	5.3860006044929	5.54989219910538	5.47300615284516	5.41902410326286	4.19125718262051	3.81180976614921	3.45899804783134	3.81538940126371	-1.9657493368804	2.60381570804885e-08	2.7087208842633e-06
Merged-chr2-140718442-3	chr2	140718344	140718544	+	786.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013802, intron 3 of 18)	intron (NM_001013802, intron 3 of 18)	-46968.0	NM_178382	71436.0	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-62017813-2	chr15	62017713	62017913	+	599.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20173.0	NR_132747	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21859750-3	chr9	21859645	21859845	+	887.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-7110.0	NM_177030	319899.0	Mm.128153	NM_177030	ENSMUSG00000032198	Dock6	2410095B20Rik|4931431C02Rik|C330023D02Rik|mKIAA1395	dedicator of cytokinesis 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19573345-4	chr7	19573219	19573419	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027189)	promoter-TSS (NM_027189)	24.0	NM_027189	69731.0	Mm.24540	NM_027189	ENSMUSG00000044709	Gemin7	2400008I04Rik|AI120175|AI461688	gem nuclear organelle associated protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3760604-4	chr4	3760506	3760706	+	848.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 10 of 12)	intron (NM_001111096, intron 10 of 12)	45642.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89321903-3	chr3	89321819	89322019	+	762.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010108, intron 1 of 4)	CpG	960.0	NM_010108	13638.0	Mm.331159	NM_010108	ENSMUSG00000028039	Efna3	AW494418|EFL-2|Ehk1-L|Epl3|LERK-3	ephrin A3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5717245-2	chr17	5717145	5717345	+	591.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 5 of 8)	intron (NM_146073, intron 5 of 8)	-81412.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56326943-2	chr17	56326843	56327043	+	783.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172132, intron 1 of 22)	intron (NM_172132, intron 1 of 22)	893.0	NM_001357909	193796.0	Mm.45047	NM_172132	ENSMUSG00000024201	Kdm4b	4732474L06Rik|Jmjd2b	lysine (K)-specific demethylase 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24205127-2	chr17	24204984	24205184	+	861.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010947, exon 6 of 6)	3' UTR (NM_010947, exon 6 of 6)	478.0	NM_001163851	224617.0	Mm.301585	NM_173186	ENSMUSG00000036473	Tbc1d24	9630033P11|C530046L02Rik|mKIAA1171	TBC1 domain family, member 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-83562466-4	chr9	83562379	83562579	+	959.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172507, intron 1 of 3)	intron (NM_172507, intron 1 of 3)	14141.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	0.763911030791224	2.03837764077888	0.810835880447361	0.793583958781335	2.17245560861067	2.32541141030852	1.072539686968	1.03796269749882	1.59275462825091	0.248812449026649	0.74758343357745
Merged-chr4-133197440-2	chr4	133197340	133197540	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_153423, exon 9 of 9)	3' UTR (NM_153423, exon 9 of 9)	1785.0	NR_105984	102466215.0		NR_105984	ENSMUSG00000099202	Mir7017	Gm27945|mmu-mir-7017	microRNA 7017	ncRNA	-0.49070136371853	-0.475789188982791	-0.120739749258443	-0.484409543081141	-0.489762172458475	-0.474698942937303	0.451213700970803	-0.483750370469864	1.83164287646796	0.495566819384549	1
Merged-chr2-180276081-4	chr2	180275974	180276174	+	998.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2609.0	NM_145851	252966.0	Mm.386884	NM_145851	ENSMUSG00000038990	Cables2	ik3-2	CDK5 and Abl enzyme substrate 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-105900475-3	chr3	105900363	105900563	+	904.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027025, intron 1 of 6)	intron (NM_027025, intron 1 of 6)	-3958.0	NM_009631	11542.0	Mm.235024	NM_009631	ENSMUSG00000000562	Adora3	A3AR|A3R|AA3R|ARA3|Gpcr2	adenosine A3 receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-137115519-3	chr2	137115438	137115638	+	970.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013822, exon 2 of 26)	exon (NM_013822, exon 2 of 26)	982.0	NM_013822	16449.0	Mm.22398	NM_013822	ENSMUSG00000027276	Jag1	ABE2|Gsfabe2|Htu|Ozz|Ser-1	jagged 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-31855617-3	chr17	31855516	31855716	+	978.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010831, intron 1 of 13)	CpG-6228	188.0	NM_010831	17691.0	Mm.290941	NM_010831	ENSMUSG00000024042	Sik1	Hrt-20|Msk|Sik|Sik-1|Snf1lk	salt inducible kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-76525128-3	chr11	76525029	76525229	+	892.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198894, intron 1 of 22)	intron (NM_198894, intron 1 of 22)	-15710.0	NM_198018	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191638931-4	chr1	191638837	191639037	+	800.520813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	63301.0	NM_001306204	77065.0	Mm.338175	NM_178632	ENSMUSG00000037461	Ints7	5930412E23Rik|int7	integrator complex subunit 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69044809-2	chr11	69044709	69044909	+	682.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011496)	promoter-TSS (NM_011496)	-828.0	NM_011496	20877.0	Mm.3488	NM_011496	ENSMUSG00000020897	Aurkb	AIM-1|AIRK2|AL022959|Aik2|Aim1|Ark2|AurB|IPL1|STK-1|Stk12|Stk5	aurora kinase B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84656109-2	chr8	84656009	84656209	+	686.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6743.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105564939-4	chr8	105564790	105564990	+	979.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013477, intron 1 of 7)	B2_Mm1t|SINE|B2	1174.0	NM_013477	11972.0	Mm.17708	NM_013477	ENSMUSG00000013160	Atp6v0d1	AI267038|Ac39|Atp6d|P39|VATX|Vma6	ATPase, H+ transporting, lysosomal V0 subunit D1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-80221160-2	chr15	80221060	80221260	+	601.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12920.0	NM_001357659	239555.0	Mm.307163	NM_178719	ENSMUSG00000022412	Mief1	A230016E22|AI452372|Smcr7l	mitochondrial elongation factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-25632366-4	chr15	25632292	25632492	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019472, intron 1 of 40)	intron (NM_019472, intron 1 of 40)	9842.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-64063012-1	chr11	64062912	64063112	+	559.0	f0_c57.idr	intron (NM_178379, intron 3 of 6)	intron (NM_178379, intron 3 of 6)	16460.0	NM_178379	70383.0	Mm.340211	NM_178379	ENSMUSG00000042148	Cox10	2410004F01Rik|AU042636	cytochrome c oxidase assembly protein 10	protein-coding	1.36614470112978	1.86053345346812	1.1181979287277	1.08538806082647	1.03772994669689	0.7560143449379	0.742950830833637	1.23127536505983	-1.87881055166328	0.174440881498348	0.642663775706403
Merged-chr7-141266108-1	chr7	141266008	141266208	+	1000.0	f0_balb.idr	intron (NM_001252601, intron 1 of 9)	intron (NM_001252601, intron 1 of 9)	316.0	NM_001252601	54123.0	Mm.3233	NM_016850	ENSMUSG00000025498	Irf7	-	interferon regulatory factor 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-73593736-2	chr15	73593636	73593836	+	681.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357747, intron 2 of 7)	intron (NM_001357747, intron 2 of 7)	2790.0	NM_001168255	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-68127400-3	chr7	68127308	68127508	+	703.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010513, intron 2 of 20)	intron (NM_010513, intron 2 of 20)	136825.0	NM_030101	78444.0	Mm.425468	NM_030101	ENSMUSG00000030553	Pgpep1l	C330024D12Rik	pyroglutamyl-peptidase I-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-52383899-4	chr5	52383791	52383991	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001256059, intron 11 of 11)	intron (NM_001256059, intron 11 of 11)	20087.0	NM_011435	20657.0	Mm.2407	NM_011435	ENSMUSG00000072941	Sod3	AI314465|EC-SOD	superoxide dismutase 3, extracellular	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-128552286-3	chr8	128552171	128552371	+	766.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-133383.0	NM_010578	16412.0	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	1.13997821948989	1.77196872050216	0.795444519392013	0.778610715130366	2.25641695182016	1.09258835723998	2.12184867409646	0.781588312553784	1.6177113721992	0.2406303148142	0.736808128664172
Merged-chr12-100728805-3	chr12	100728705	100728905	+	920.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-3685.0	NM_153587	73086.0	Mm.220417	NM_153587	ENSMUSG00000021180	Rps6ka5	3110005L17Rik|6330404E13Rik|AI854034|MSK1|MSPK1|RLPK|RLSK|S6K-alpha-5	ribosomal protein S6 kinase, polypeptide 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-73388717-4	chr14	73388589	73388789	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3400.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-37996858-2	chr12	37996747	37996947	+	871.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178681, intron 2 of 24)	intron (NM_178681, intron 2 of 24)	116330.0	NM_178681	217480.0	Mm.126525	NM_178681	ENSMUSG00000036095	Dgkb	6430574F24|90kda|C630029D13Rik|DAGK2|DGK|DGK-beta|mKIAA0718	diacylglycerol kinase, beta	protein-coding	-1.20406370813143	-1.56956373024278	-1.57884638916872	-1.58647144159385	-1.598104728449	-1.56755213932999	-1.57674499865798	-1.58510656085539	-1.70745470802464	0.626337835847419	1
Merged-chr8-74999671-1	chr8	74999571	74999771	+	674.0	f0_balb.idr	exon (NM_178017, exon 3 of 11)	exon (NM_178017, exon 3 of 11)	6021.0	NM_178017	70823.0	Mm.261739	NM_178017	ENSMUSG00000034518	Hmgxb4	4733401K04Rik|AI316803|Hmgb2l1	HMG box domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76818196-4	chr15	76818107	76818307	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001168288)	promoter-TSS (NM_001168288)	-37.0	NM_198420	223666.0	Mm.322931	NM_198420	ENSMUSG00000033697	Arhgap39	9530053N22|AI843066|D15Wsu169e|Kiaa1688|Porf-2	Rho GTPase activating protein 39	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-51028856-4	chr9	51028751	51028951	+	875.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19778.0	NM_178710	235344.0	Mm.104932	NM_178710	ENSMUSG00000037112	Sik2	G630080D20Rik|Snf1lk2	salt inducible kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-76017560-1	chr13	76017460	76017660	+	798.0	f1_c57bl6.idr	5' UTR (NM_178916, exon 1 of 4)	5' UTR (NM_178916, exon 1 of 4)	1002.0	NM_178916	218341.0	Mm.266515	NM_178916	ENSMUSG00000043190	Rfesd	AI256775|D030068K09	Rieske (Fe-S) domain containing	protein-coding	2.62504925146246	2.47107336275569	1.00735336828443	0.984718807019376	1.80199732501461	2.29371537863117	1.01367638401399	1.44890969931263	-0.695743090196985	0.576091973506874	0.965286201225318
Merged-chr2-152750664-2	chr2	152750564	152750764	+	696.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3509.0	NM_053091	84682.0	Mm.196668	NM_053091	ENSMUSG00000009876	Cox4i2	Cox4b|CoxIV-2	cytochrome c oxidase subunit 4I2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-17610262-2	chr6	17610162	17610362	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-26748.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-85068373-2	chr16	85068239	85068439	+	796.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001198825, intron 5 of 15)	Lx5|LINE|L1	96128.0	NR_045889	100038614.0	Mm.441351	NR_045889	ENSMUSG00000115518	Gm10791	-	predicted gene 10791	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-79530531-4	chr11	79530437	79530637	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033711)	promoter-TSS (NM_001033711)	72.0	NM_146023	101488212.0	Mm.439665	NM_146023	ENSMUSG00000070354	Evi2	Evi2a-evi2b|Gm21975	ecotropic viral integration site 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-149800400-1	chr4	149800300	149800500	+	540.0	f1_c57bl6.idr	Intergenic	Intergenic	-26133.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	1.73671347936766	1.01915514015852	1.54172603390649	2.08690998444589	1.4361160625769	1.02288120340125	1.68666971435327	1.63297142607969	-0.630431088175184	0.603389244659328	0.973569682278458
Merged-chr6-31525739-2	chr6	31525639	31525839	+	993.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_013723, intron 4 of 7)	intron (NM_013723, intron 4 of 7)	38198.0	NM_013723	27205.0	Mm.89918	NM_013723	ENSMUSG00000025608	Podxl	AW121214|Ly102|PC|PCLP-1|Pclp1|Podxl1	podocalyxin-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-55829240-2	chr16	55829140	55829340	+	777.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030612, intron 2 of 13)	intron (NM_030612, intron 2 of 13)	-7102.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41339393-4	chr19	41339310	41339510	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 2 of 16)	intron (NM_031376, intron 2 of 16)	45660.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-116371752-1	chr14	116371652	116371852	+	833.0	f1_c57bl6.idr	intron (NM_175500, intron 7 of 7)	Lx|LINE|L1	-553545.0	NM_001079844	23888.0	Mm.440025	NM_011821	ENSMUSG00000058571	Gpc6	-	glypican 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-113328496-2	chr6	113328396	113328596	+	618.75	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_149720, exon 2 of 7)	non-coding (NR_149720, exon 2 of 7)	1520.0	NM_010957	18294.0	Mm.43612	NM_010957	ENSMUSG00000030271	Ogg1	Mmh	8-oxoguanine DNA-glycosylase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-45260812-5	chr9	45260723	45260923	+	749.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_136903, intron 4 of 5)	MIR|SINE|MIR	5884.0	NR_106054	102466803.0		NR_106054	ENSMUSG00000098361	Mir7086	Gm27643|mmu-mir-7086	microRNA 7086	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-126663589-4	chr3	126663461	126663661	+	979.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025438, intron 2 of 18)	intron (NM_001025438, intron 2 of 18)	66610.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	3.53183468307196	3.7287239321454	3.53480759683999	3.18518024168815	3.29335769610101	3.95449180115134	3.09400709349384	3.10479691525314	-0.154127810241661	0.780822622786095	0.998431161219273
Merged-chr15-80564366-4	chr15	80564261	80564461	+	918.69165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3891.0	NM_001163189	383075.0	Mm.297626	NM_001163189	ENSMUSG00000050439	Enthd1	Gm1242|Gm86	ENTH domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-6405423-4	chr2	6405324	6405524	+	761.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181399, intron 4 of 13)	intron (NM_181399, intron 4 of 13)	52688.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-90050017-4	chr13	90049920	90050120	+	962.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028012, intron 3 of 7)	RLTR18-int|LTR|ERVK	39588.0	NM_028012	108138.0	Mm.37531	NM_028012	ENSMUSG00000021615	Xrcc4	2310057B22Rik|AW413319|AW545101	X-ray repair complementing defective repair in Chinese hamster cells 4	protein-coding	0.540320782814406	1.33348677590245	0.570107464619502	0.559091732410656	0.543153426492883	1.68979669594145	0.990299883014525	1.54754059374121	1.95014317188056	0.233970529470838	0.729642630200429
Merged-chr3-144606657-2	chr3	144606557	144606757	+	795.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	36230.0	NM_053102	93684.0	Mm.29812	NM_053102	ENSMUSG00000037072	Selenof	9430015P09Rik|Sep15	selenoprotein F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-73780091-4	chr12	73779908	73780108	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-121316.0	NM_001313920	15251.0	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-63652566-2	chr18	63652466	63652666	+	577.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39793.0	NM_016792	53382.0	Mm.19169	NM_016792	ENSMUSG00000024583	Txnl1	32kDa|TRP32|Txnl	thioredoxin-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-38375285-2	chr2	38375185	38375385	+	610.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23977.0	NM_010710	16870.0	Mm.142856	NM_010710	ENSMUSG00000000247	Lhx2	LH2A|Lh-2|Lim2|ap|apterous	LIM homeobox protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71165181-4	chr17	71165073	71165273	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18359.0	NM_001357791	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	4.97766927068073	5.5049243595626	5.88118711662224	5.638838693246	5.13306105982246	5.33595654568121	5.66340450802895	5.35704129187377	-0.172251739976161	0.558955464741536	0.960321604678676
Merged-chr15-78176441-2	chr15	78176341	78176541	+	700.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2333.0	NM_025931	67042.0	Mm.30191	NM_025931	ENSMUSG00000016637	Ift27	2600013G09Rik|Rabl4	intraflagellar transport 27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-23740411-4	chr17	23740295	23740495	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023824)	promoter-TSS (NM_023824)	-65.0	NM_023824	76498.0	Mm.491253	NM_023824	ENSMUSG00000023909	Paqr4	1500004C10Rik	progestin and adipoQ receptor family member IV	protein-coding	4.7604384772124	4.77815639278471	4.62936241737689	4.40758657851291	4.98075752174595	4.20189721161756	5.30372598625447	5.16570102068974	0.399933982909138	0.265676118440572	0.768338920709461
Merged-chr4-148153018-2	chr4	148152918	148153118	+	777.400024	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163707)	promoter-TSS (NM_001163707)	-883.0	NM_001163707	50762.0	Mm.27445	NM_015797	ENSMUSG00000055401	Fbxo6	AA408845|FBG2|Fbs2|Fbx6b|Fbxo6b	F-box protein 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135709227-4	chr4	135709069	135709269	+	833.895874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_174851)	TTS (NM_174851)	-18990.0	NM_178257	230828.0	Mm.261647	NM_178257	ENSMUSG00000037157	Il22ra1	9130219A07Rik|IL-22R|Il22r	interleukin 22 receptor, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-130917805-4	chr4	130917716	130917916	+	975.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010686, intron 1 of 7)	intron (NM_010686, intron 1 of 7)	4482.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-137311021-2	chr7	137310921	137311121	+	672.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113415, intron 4 of 15)	intron (NM_001113415, intron 4 of 15)	3424.0	NM_001113415	13593.0	Mm.258708	NM_010096	ENSMUSG00000010476	Ebf3	3110018A08Rik|O/E-2|mKIAA4201	early B cell factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-45313550-1	chr19	45313450	45313650	+	978.0	f1_c57bl6.idr	Intergenic	Intergenic	-50184.0	NM_001360122	12234.0	Mm.119717	NM_009771	ENSMUSG00000025217	Btrc	Beta-Trcp1|E3RS-IkappaB|E3RSIkappaB|FWD1|Fbw1a|HOS|SCF b-TRCP|Slimb|b-TrCP|beta-TrCP	beta-transducin repeat containing protein	protein-coding	-0.0958208090739194	0.059181076444332	-0.565072664192988	-0.567975540756126	-0.572075612438898	-0.560459623560526	-0.564242597792743	-0.567468502081214	-3.41034332710449	0.216038135656497	1
Merged-chr7-127961783-2	chr7	127961683	127961883	+	546.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5696.0	NM_001347649	233908.0	Mm.277680	NM_139149	ENSMUSG00000030795	Fus	D430004D17Rik|D930039C12Rik|Fus1|Tls	fused in sarcoma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5963494-2	chr19	5963394	5963594	+	808.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164057, intron 1 of 17)	intron (NM_001164057, intron 1 of 17)	712.0	NM_001164057	18969.0	Mm.209931	NM_008893	ENSMUSG00000024833	Pola2	AI573378	polymerase (DNA directed), alpha 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167067749-4	chr2	167067646	167067846	+	854.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	2453.0	NR_028540	100217443.0		NR_028540		Snord12	MBII-99	small nucleolar RNA, C/D box 12	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-75838701-2	chr10	75838601	75838801	+	894.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-3820.0	NM_010361	14872.0	Mm.24118	NM_010361	ENSMUSG00000033318	Gstt2	AI266894|Yrs|mGSTT2	glutathione S-transferase, theta 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-78265520-2	chr11	78265420	78265620	+	659.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001002004, intron 6 of 38)	B1F1|SINE|Alu	3766.0	NM_001002004	72503.0	Mm.237103	NM_001002004	ENSMUSG00000010277	2610507B11Rik	AU022687|D11Bhm178e|D11Bhm179e|E1|Kiaa0100|mKIAA0100	RIKEN cDNA 2610507B11 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-60280052-4	chr10	60279968	60280168	+	952.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011179, intron 1 of 14)	B4A|SINE|B4	2440.0	NM_001146121	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-77975646-2	chr10	77975546	77975746	+	571.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3004.0	NM_026431	67884.0	Mm.297512	NM_026431	ENSMUSG00000020284	1810043G02Rik	AV026620|D10Jhu13e	RIKEN cDNA 1810043G02 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-29101022-3	chr2	29100933	29101133	+	806.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR25A|LTR|ERVK	-23959.0	NM_198033	269254.0	Mm.41867	NM_198033	ENSMUSG00000043535	Setx	A130090N03|A930037J23Rik|AOA2|AW060766|Als4|SCAR1|Sen1|mKIAA0625	senataxin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-79842319-4	chr3	79842235	79842435	+	993.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027495, intron 1 of 11)	intron (NM_027495, intron 1 of 11)	327.0	NM_027495	70652.0	Mm.46635	NM_027495	ENSMUSG00000027956	Tmem144	1110057I03Rik|5730537D05Rik	transmembrane protein 144	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-8608095-2	chr11	8607995	8608195	+	803.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 2 of 30)	B1F1|SINE|Alu	56440.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-25052471-4	chr19	25052355	25052555	+	965.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028785, intron 2 of 47)	intron (NM_028785, intron 2 of 47)	52926.0	NM_028785	76088.0	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71681976-2	chr17	71681876	71682076	+	554.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177087, intron 1 of 19)	intron (NM_177087, intron 1 of 19)	8715.0	NM_177087	320159.0	Mm.187372	NM_177087	ENSMUSG00000045761	Togaram2	4632412N22Rik|Fam179a	TOG array regulator of axonemal microtubules 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-53082088-1	chr14	53081988	53082188	+	887.0	f0_c57.idr	Intergenic	Intergenic	-42622.0	NR_155501	102632039.0	Mm.410779	NR_155501		Gm30214	-	predicted gene, 30214	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69671391-4	chr11	69671283	69671483	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159375, intron 1 of 10)	CpG	1040.0	NM_144958	13681.0	Mm.26680	NM_144958	ENSMUSG00000059796	Eif4a1	BM-010|Ddx2a|Eif4	eukaryotic translation initiation factor 4A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153784199-4	chr2	153784102	153784302	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_036629, intron 3 of 7)	MLT1E1A|LTR|ERVL-MaLR	3323.0	NR_036629	100504221.0	Mm.246778	NM_177849	ENSMUSG00000044083	Efcab8	A630008I04|EG329541	EF-hand calcium binding domain 8	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-35326691-4	chr15	35326544	35326744	+	829.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045280, intron 1 of 2)	CpG	1891.0	NR_045280	100126269.0	Mm.247402	NR_045280	ENSMUSG00000115453	BC048602	-	cDNA sequence BC048602	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-29356449-2	chr19	29356349	29356549	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026362, intron 3 of 5)	intron (NM_026362, intron 3 of 5)	5422.0	NM_026362	67759.0	Mm.275511	NM_026362	ENSMUSG00000016495	Plgrkt	1110007H22Rik|5033414D02Rik|AI852040|Plg-R(KT)|Plg-RKT	plasminogen receptor, C-terminal lysine transmembrane protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-119417368-1	chr9	119417268	119417468	+	580.0	f1_balb.idr	intron (NM_007397, intron 1 of 9)	intron (NM_007397, intron 1 of 9)	15190.0	NM_001313757	11481.0	Mm.8940	NM_007397	ENSMUSG00000061393	Acvr2b	4930516B21Rik|ActRIIB	activin receptor IIB	protein-coding	1.67492241233288	2.07456492245117	1.99671948778569	1.37596917999905	1.83997961011192	3.48425214286075	1.84958275852871	1.60225416915837	1.47237759237724	0.133161325193298	0.570764692507331
Merged-chr11-39149861-2	chr11	39149705	39149905	+	625.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1VL4|LINE|L1	240420.0	NR_126439	75315.0	Mm.461295	NR_126439		4930553C11Rik	-	RIKEN cDNA 4930553C11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-130372293-3	chr1	130372175	130372375	+	799.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50549.0	NR_151525	102640368.0		NR_151525	ENSMUSG00000087691	Gm15674	-	predicted gene 15674	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-4336041-1	chr11	4335941	4336141	+	647.0	f0_balb.idr	Intergenic	Intergenic	69245.0	NM_001039537	16878.0	Mm.4964	NM_008501	ENSMUSG00000034394	Lif	-	leukemia inhibitory factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-31092516-2	chr5	31092416	31092616	+	734.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347323, intron 2 of 8)	intron (NM_001347323, intron 2 of 8)	1011.0	NM_011773	22784.0	Mm.1396	NM_011773	ENSMUSG00000029151	Slc30a3	Znt3	solute carrier family 30 (zinc transporter), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-131430259-3	chr2	131430161	131430361	+	581.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61601.0	NM_001177834	228608.0	Mm.136586	NM_145533	ENSMUSG00000027333	Smox	B130066H01Rik|PAO|PAOh1|SMO	spermine oxidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-88197412-3	chr11	88197313	88197513	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291270, intron 1 of 4)	intron (NM_001291270, intron 1 of 4)	3307.0	NM_001291270	64656.0	Mm.168680	NM_024174	ENSMUSG00000023723	Mrps23	D11Bwg1153e|MRP-S23|Rpms23|S23mt	mitochondrial ribosomal protein S23	protein-coding	3.84710028460616	4.69769928158319	4.10343402512456	4.6518327776827	4.54621120339159	5.10255879302054	4.20062241253627	4.07457179736367	0.218929998681671	0.605319249833321	0.974576632476413
Merged-chr10-95502440-2	chr10	95502340	95502540	+	541.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359477)	promoter-TSS (NM_001359477)	-491.0	NM_001359477	67270.0	Mm.30008	NM_026065	ENSMUSG00000062981	Mrpl42	2700009F22Rik|2900055D03Rik|D10Ertd322e|HSPC204|L31mt|L42mt|MRP-L31|MRP-L42|MRP-S32|PTD007|Rpml31|S32mt	mitochondrial ribosomal protein L42	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95457907-4	chr3	95457734	95457934	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037737, intron 3 of 21)	intron (NM_001037737, intron 3 of 21)	23444.0	NM_001037737	11863.0	Mm.250265	NM_009709	ENSMUSG00000015522	Arnt	D3Ertd557e|Drnt|ESTM42|Hif1b|W08714|bHLHe2|mKIAA4051	aryl hydrocarbon receptor nuclear translocator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-126630799-1	chr3	126630699	126630899	+	767.0	f1_balb.idr	intron (NM_001025438, intron 2 of 18)	L1ME2|LINE|L1	33848.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	2.23490603582959	1.01104383768176	1.71520976298359	1.78212560655418	1.89074956171029	1.92514209617389	0.995097627580908	0.977112590589859	-0.660436665353872	0.606735718209703	0.974576632476413
Merged-chr10-62483686-2	chr10	62483586	62483786	+	622.900024	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358543, intron 1 of 7)	intron (NM_001358543, intron 1 of 7)	2912.0	NM_001113355	30930.0	Mm.260703	NM_133672	ENSMUSG00000020078	Vps26a	AA407240|HB58|Vps26	VPS26 retromer complex component A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-32833406-2	chr19	32833306	32833506	+	551.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	75829.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-100180244-2	chr1	100180147	100180347	+	956.833374	f0_balb.idr|f0_c57.idr	intron (NM_172851, intron 10 of 23)	L1Md_F2|LINE|L1	407482.0	NM_172851	241175.0	Mm.251301	NM_172851	ENSMUSG00000067028	Cntnap5b	C230078M14Rik|Caspr5-2	contactin associated protein-like 5B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-31856027-4	chr17	31855972	31856172	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010831)	promoter-TSS (NM_010831)	-268.0	NM_010831	17691.0	Mm.290941	NM_010831	ENSMUSG00000024042	Sik1	Hrt-20|Msk|Sik|Sik-1|Snf1lk	salt inducible kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-3176659-2	chr11	3176517	3176717	+	1000.0	f0_balb.idr|f1_balb.idr	intron (NM_030207, intron 6 of 32)	B3|SINE|B2	16846.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-66843468-4	chr4	66843382	66843582	+	964.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_021297, exon 3 of 3)	3' UTR (NM_021297, exon 3 of 3)	15931.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	2.41427821732141	3.5617084980887	1.87786123607712	2.55718986151629	3.13079093652773	3.97083692897086	3.54228453996927	2.93277792751708	1.17045785470255	0.0940230710981661	0.475184838683992
Merged-chr18-80714998-4	chr18	80714915	80715115	+	896.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1944.0	NM_001164110	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-36967021-4	chr17	36966900	36967100	+	921.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8408.0	NM_029602	76416.0	Mm.26684	NM_029602	ENSMUSG00000036214	Znrd1as	1700022C21Rik|AI746295|Znrd1-as	zinc ribbon domain containing 1, antisense	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131026863-2	chr1	131026763	131026963	+	743.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7018.0	NM_010548	16153.0	Mm.874	NM_010548	ENSMUSG00000016529	Il10	CSIF|Il-10	interleukin 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-48580988-3	chr9	48580846	48581046	+	646.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	24177.0	NM_010924	18113.0	Mm.8362	NM_010924	ENSMUSG00000032271	Nnmt	-	nicotinamide N-methyltransferase	protein-coding	0.711543867140251	0.850405575451231	1.02341105643007	0.880514493652159	0.327288296829702	0.349792552634352	0.342487716322108	0.336240673924605	-4.33130144934189	0.0175224461276281	1
Merged-chr10-80267983-2	chr10	80267883	80268083	+	781.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133188, intron 1 of 11)	intron (NM_133188, intron 1 of 11)	2992.0	NM_133188	70248.0	Mm.148693	NM_133188	ENSMUSG00000069565	Dazap1	2410042M16Rik|mPrrp	DAZ associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-27291155-4	chr3	27291058	27291258	+	973.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-25919.0	NM_009425	22035.0	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5765949-4	chr17	5765857	5766057	+	933.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32700.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-58676248-2	chr16	58676148	58676348	+	577.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007757, intron 5 of 6)	intron (NM_007757, intron 5 of 6)	6040.0	NM_007757	12892.0	Mm.291519	NM_007757	ENSMUSG00000022742	Cpox	CPX|Cpo|HCP|cac|nct	coproporphyrinogen oxidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-7142472-4	chr10	7142371	7142571	+	982.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172546, intron 5 of 12)	intron (NM_172546, intron 5 of 12)	69766.0	NM_172546	215748.0	Mm.37984	NM_172546	ENSMUSG00000015202	Cnksr3	6820402C05|BC024086|Magi1	Cnksr family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-72316497-3	chr8	72316427	72316627	+	612.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-2535.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	1.7855131141876	2.71775375731127	1.10902652391196	1.0817015407202	2.96313278819049	2.19705616278298	1.11663423920609	2.37603283091919	0.999452014834672	0.389148969296868	0.878578793881975
Merged-chr13-95893490-2	chr13	95893401	95893601	+	699.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1579.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	0.3970244774098	0.430031984731214	1.38735596116533	0.411077748262082	0.575842436575501	0.432406527053811	1.3096283106445	1.04092569694447	0.615558705310163	0.728512935196167	0.998431161219273
Merged-chr14-103011946-4	chr14	103011727	103011927	+	906.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045657, intron 2 of 2)	L1MA6|LINE|L1	21976.0	NR_045657	71264.0	Mm.399572	NR_045657	ENSMUSG00000114980	4933432I03Rik	-	RIKEN cDNA 4933432I03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-165705598-2	chr1	165705498	165705698	+	616.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038846, intron 1 of 5)	intron (NM_001038846, intron 1 of 5)	2496.0	NM_001038846	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-35199953-4	chr9	35199860	35200060	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177847)	promoter-TSS (NM_001177847)	5.0	NM_001177846	117149.0	Mm.23987	NM_054096	ENSMUSG00000032041	Tirap	AA407980|C130027E04Rik|Mal|Tlr4ap|Wyatt	toll-interleukin 1 receptor (TIR) domain-containing adaptor protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-21733954-2	chr19	21733854	21734054	+	654.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44386.0	NM_001033759	83921.0	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118703420-3	chr9	118703316	118703516	+	797.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 15 of 27)	intron (NM_133721, intron 15 of 27)	-8276.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	3.63038263607844	2.45755432691651	3.96477908536501	2.11630270278529	2.67529630163446	2.07846143299817	3.57321046918673	1.40239804392582	-0.963824049359885	0.258383133403629	0.758460487989743
Merged-chr5-145114300-4	chr5	145114196	145114396	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023142)	promoter-TSS (NM_023142)	40.0	NM_023142	11867.0	Mm.30010	NM_023142	ENSMUSG00000029622	Arpc1b	41kDa|AA408064|AA408534|AA571392|AF007010|AW208418|L72|SOP2Hs|p41-ARC	actin related protein 2/3 complex, subunit 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-71272505-2	chr6	71272380	71272580	+	644.0	f0_balb.idr|f0_c57.idr	TTS (NR_106192)	TTS (NR_106192)	461.0	NM_145568	57896.0	Mm.250569	NM_145568	ENSMUSG00000053012	Krcc1	AA792894	lysine-rich coiled-coil 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-29513351-4	chr17	29513257	29513457	+	917.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22312.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	3.96324017129453	4.72449898750574	3.46080918469273	4.30450079766109	2.89433977013097	4.09370828495315	2.5562452494802	3.90740534816278	-0.948853268365216	0.0899129177581743	0.46325874059372
Merged-chr10-78351890-4	chr10	78351733	78351933	+	738.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053014)	promoter-TSS (NM_053014)	-133.0	NM_053014	28169.0	Mm.141230	NM_053014	ENSMUSG00000001211	Agpat3	AW061257|AW493985|D10Jhu12e|lpaat3	1-acylglycerol-3-phosphate O-acyltransferase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-77867946-2	chr14	77867850	77868050	+	657.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_025384, intron 1 of 5)	intron (NM_025384, intron 1 of 5)	6967.0	NM_025384	66148.0	Mm.248046	NM_025384	ENSMUSG00000022013	Dnajc15	1110003P16Rik|Dnajd1	DnaJ heat shock protein family (Hsp40) member C15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-88270124-2	chr7	88270024	88270224	+	747.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-7961.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-27692402-4	chr3	27692284	27692484	+	934.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356953, intron 1 of 26)	intron (NM_001356953, intron 1 of 26)	18068.0	NM_001356953	72007.0	Mm.38832	NM_173182	ENSMUSG00000039286	Fndc3b	1600019O04Rik|AW550168|Fad104|mKIAA4164	fibronectin type III domain containing 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117451897-2	chr8	117451797	117451997	+	600.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028941, intron 14 of 20)	intron (NM_028941, intron 14 of 20)	-1126.0	NR_106045	102466801.0		NR_106045	ENSMUSG00000099062	Mir7077	Gm27774|mmu-mir-7077	microRNA 7077	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-122762923-2	chr10	122762823	122763023	+	563.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110218, intron 1 of 9)	intron (NM_001110218, intron 1 of 9)	83608.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-102278167-2	chr15	102278067	102278267	+	696.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	AT_rich|Low_complexity|Low_complexity	-1289.0	NM_134100	106073.0	Mm.287740	NM_134100	ENSMUSG00000045665	Mfsd5	AA409375|AW556797|D15Mgi27	major facilitator superfamily domain containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47754005-1	chr17	47753905	47754105	+	662.0	f1_c57bl6.idr	intron (NM_001161723, intron 1 of 8)	B1_Mur3|SINE|Alu	16074.0	NM_001161723	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167570074-4	chr2	167569978	167570178	+	815.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31883.0	NM_011427	20613.0	Mm.2093	NM_011427	ENSMUSG00000042821	Snai1	Sna|Sna1|Snail|Snail1	snail family zinc finger 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27411868-4	chr2	27411786	27411986	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009500, intron 1 of 27)	intron (NM_009500, intron 1 of 27)	15722.0	NR_133905	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-24393869-4	chr16	24393781	24393981	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_037954)	promoter-TSS (NR_037954)	-226.0	NR_037954	68841.0	Mm.361995	NR_037954		Lppos	1110054M08Rik|AI481106	LIM domain containing preferred translocation partner in lipoma, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-26693951-4	chr8	26693851	26694051	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	130472.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-13553148-4	chr10	13553051	13553251	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347361)	promoter-TSS (NM_001347361)	-9.0	NM_001347361	56535.0	Mm.282711	NM_019961	ENSMUSG00000019809	Pex3	1700014F15Rik|2810027F19Rik|2900010N04Rik	peroxisomal biogenesis factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-83775169-2	chr17	83775069	83775269	+	739.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_054082, intron 8 of 16)	RSINE1|SINE|B4	69006.0	NM_001171052	116871.0	Mm.277668	NM_054082	ENSMUSG00000055817	Mta3	1110002J22Rik|mKIAA1266	metastasis associated 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-44229542-4	chr13	44229417	44229617	+	973.1875	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13030.0	NR_045088	100503592.0	Mm.184925	NR_045088	ENSMUSG00000113186	A330076C08Rik	-	RIKEN cDNA A330076C08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-60175939-2	chr11	60175839	60176039	+	970.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037764, intron 1 of 4)	CpG	24678.0	NR_105886	102465555.0		NR_105886	ENSMUSG00000098547	Mir6921	Gm27352|mmu-mir-6921	microRNA 6921	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-82570214-4	chr11	82570106	82570306	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-63147.0	NR_033582	791422.0	Mm.341562	NR_033582	ENSMUSG00000069796	Gm11426	-	predicted gene 11426	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-103569955-4	chr2	103569876	103570076	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178890, intron 1 of 16)	intron (NM_178890, intron 1 of 16)	3666.0	NM_178890	99382.0	Mm.35850	NM_178890	ENSMUSG00000032724	Abtb2	AW539457|BPOZ-2	ankyrin repeat and BTB (POZ) domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-75609689-4	chr2	75609609	75609809	+	911.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49550.0	NM_146130	229279.0	Mm.316306	NM_053263	ENSMUSG00000059005	Hnrnpa3	2410013L13Rik|2610209F03Rik|2610510D13Rik|Hnrpa3	heterogeneous nuclear ribonucleoprotein A3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-8985612-4	chr14	8985499	8985699	+	896.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	319209.0	NR_045968	74859.0	Mm.84041	NR_045968	ENSMUSG00000097898	4930455B14Rik	1700027C12Rik	RIKEN cDNA 4930455B14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-39615597-1	chr1	39615497	39615697	+	667.0	f0_balb.idr	Intergenic	(GGA)n|Simple_repeat|Simple_repeat	35585.0	NM_170597	263764.0	Mm.122091	NM_170597	ENSMUSG00000050967	Creg2	A830098L22Rik	cellular repressor of E1A-stimulated genes 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-60790103-3	chr19	60790010	60790210	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010123, intron 1 of 21)	CpG	583.0	NM_010123	13669.0	Mm.2238	NM_010123	ENSMUSG00000024991	Eif3a	A830012B05Rik|Csma|Eif3|Eif3s10|mKIAA0139	eukaryotic translation initiation factor 3, subunit A	protein-coding	0.412474484016654	0.61910018615801	0.596758475073048	0.714429229889488	0.783795499259169	1.03667130636697	0.601699439883145	0.719071518529349	1.33863195838081	0.397066136404274	1
Merged-chr8-119557310-2	chr8	119557210	119557410	+	872.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_019709, intron 1 of 23)	(CA)n|Simple_repeat|Simple_repeat	1451.0	NM_001167910	56453.0	Mm.206934	NM_019709	ENSMUSG00000031835	Mbtps1	0610038M03Rik|AV003995|S1P|SKI-1|Ski1|mKIAA0091	membrane-bound transcription factor peptidase, site 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140616368-4	chr5	140616247	140616447	+	948.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008494)	TTS (NM_008494)	9006.0	NM_008494	16848.0	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-10761380-2	chr15	10761280	10761480	+	601.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045063, intron 2 of 6)	(CA)n|Simple_repeat|Simple_repeat	46480.0	NR_045065	75259.0	Mm.33928	NR_045063	ENSMUSG00000096971	4930556M19Rik	1700009D01Rik|C130022M03Rik	RIKEN cDNA 4930556M19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180426858-2	chr1	180426758	180426958	+	972.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56646.0	NM_001081227	381310.0	Mm.44791	NM_001081227	ENSMUSG00000053963	Stum	6330403A02Rik|Gm10001|R75555	mechanosensory transduction mediator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111933491-4	chr12	111933384	111933584	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10998.0	NR_029464	77675.0	Mm.98331	NR_029464	ENSMUSG00000113769	5033406O09Rik	9130204G15Rik	RIKEN cDNA 5033406O09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-37389781-1	chr2	37389681	37389881	+	695.0	f0_balb.idr	exon (NM_001290642, exon 11 of 22)	exon (NM_001290642, exon 11 of 22)	10347.0	NR_028535	100217435.0		NR_028535		Snord90	MBII-295	small nucleolar RNA, C/D box 90	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-31117156-2	chr7	31117058	31117258	+	998.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_011322, intron 5 of 5)	intron (NM_011322, intron 5 of 5)	-1832.0	NM_001110252	15451.0	Mm.19182	NM_008281	ENSMUSG00000001249	Hpn	Hlb320	hepsin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-158132640-2	chr2	158132540	158132740	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009373, intron 4 of 12)	intron (NM_009373, intron 4 of 12)	13752.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-17529644-2	chr16	17529544	17529744	+	734.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026909, intron 3 of 4)	B3|SINE|B2	1408.0	NM_026909	69009.0	Mm.10174	NM_026909	ENSMUSG00000022760	Thap7	1810004B07Rik	THAP domain containing 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-43753241-1	chr13	43753141	43753341	+	920.0	f1_balb.idr	Intergenic	Intergenic	-31871.0	NM_009856	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	1.32525392593974	1.37392044066706	1.6582162919239	1.50877145754042	1.33708345119348	0.832281182765324	0.819545052150184	0.997468752070151	-1.97302660241285	0.145901112286461	0.596091332081597
Merged-chr2-180170786-2	chr2	180170686	180170886	+	820.575012	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019822)	promoter-TSS (NM_019822)	-802.0	NM_019822	56436.0	Mm.316654	NM_019822	ENSMUSG00000039041	Adrm1	1110063P18Rik|2510006J17Rik|AA408205|ARM-1|AU043535|Arm1|Gp110|Rpn13	adhesion regulating molecule 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-120579312-2	chr9	120579212	120579412	+	639.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	1981.0	NR_073359	76100.0	Mm.48212	NR_073359	ENSMUSG00000052658	5830454E08Rik	-	RIKEN cDNA 5830454E08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-73644146-4	chr15	73644052	73644252	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19408.0	NM_001033219	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65390913-2	chr9	65390813	65391013	+	659.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_028974, exon 1 of 1)	exon (NM_028974, exon 1 of 1)	739.0	NM_028974	74492.0	Mm.159223	NM_028974	ENSMUSG00000054978	Kbtbd13	5430433E21Rik	kelch repeat and BTB (POZ) domain containing 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70684350-2	chr11	70684250	70684450	+	654.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001190379, intron 3 of 20)	ID4_|SINE|ID	3755.0	NM_001190376	216874.0	Mm.473726	NM_178116	ENSMUSG00000040712	Camta2	Kiaa0909-hp|mKIAA0909	calmodulin binding transcription activator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-108478307-3	chr6	108478208	108478408	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 46 of 61)	intron (NM_010585, intron 46 of 61)	-11435.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-51866492-4	chr12	51866394	51866594	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36958.0	NM_144788	207304.0	Mm.249391	NM_144788	ENSMUSG00000035247	Hectd1	A630086P08Rik|AI844876|b2b327Clo|opm	HECT domain E3 ubiquitin protein ligase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-96177197-4	chr5	96177095	96177295	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-15205.0	NM_144910	231464.0	Mm.28374	NM_144910	ENSMUSG00000034724	Cnot6l	4932442K20Rik	CCR4-NOT transcription complex, subunit 6-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76284890-2	chr15	76284790	76284990	+	649.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_028852, intron 3 of 4)	intron (NM_028852, intron 3 of 4)	6078.0	NR_037240	100526548.0		NR_037240	ENSMUSG00000093169	Mir3079	mmu-mir-3079	microRNA 3079	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-69058302-2	chr3	69058272	69058472	+	716.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13630.0	NM_025863	66949.0	Mm.176695	NM_025863	ENSMUSG00000034317	Trim59	2310035M22Rik|2700022F13Rik|Mrf1|TSBF1	tripartite motif-containing 59	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-152951633-3	chr2	152951509	152951709	+	829.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145744)	promoter-TSS (NM_145744)	-27.0	NM_001159376	252864.0	Mm.330671	NM_145744	ENSMUSG00000042662	Dusp15	AI851682|LMW-DSP10|T-DSP10	dual specificity phosphatase-like 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-128808717-2	chr6	128808617	128808817	+	891.083374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17598.0	NM_030599	80782.0	Mm.6180	NM_030599	ENSMUSG00000079298	Klrb1b	Klrb1d|Ly55b|Ly55d|NKR-P1B|NKR-P1D|Nkrp1-b|Nkrp1b|Nkrp1d|ly-55b|ly-55d	killer cell lectin-like receptor subfamily B member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-85509928-2	chr13	85509823	85510023	+	858.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-220437.0	NM_145452	218397.0	Mm.259653	NM_145452	ENSMUSG00000021549	Rasa1	Gap|RasGAP|Rasa	RAS p21 protein activator 1	protein-coding	0.853932221705126	1.24592232228724	0.583688018299698	0.576097953174719	1.18090463235082	1.25799390215274	0.585847891795677	1.04084974958828	0.935308913527108	0.555781893841811	0.960200320962952
Merged-chr6-146686974-4	chr6	146686876	146687076	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29758.0	NR_046277	74925.0	Mm.386304	NR_046277	ENSMUSG00000085238	4930479D17Rik	-	RIKEN cDNA 4930479D17 gene	ncRNA	3.48120120510407	4.11819581225787	2.42229850230467	3.46064432004724	2.98631644898809	3.2517848228674	3.85231755293065	2.67866836202082	-0.36728018353002	0.563091731175262	0.960362415684079
Merged-chr13-119840221-2	chr13	119840121	119840321	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-10004.0	NM_001001449	380878.0	Mm.327311	NM_001001449	ENSMUSG00000094237	AF067063	-	cDNA sequence AF067063	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-38668739-2	chr13	38668639	38668839	+	915.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	-9711.0	NM_025380	66143.0	Mm.490319	NM_025380	ENSMUSG00000001707	Eef1e1	1110003A02Rik	eukaryotic translation elongation factor 1 epsilon 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-110653457-2	chr9	110653357	110653557	+	905.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_183276, intron 1 of 53)	intron (NM_183276, intron 1 of 53)	704.0	NM_183276	235627.0	Mm.335481	NM_183276	ENSMUSG00000056724	Nbeal2	1110014F23Rik|BC042396|mKIAA0540	neurobeachin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-83075740-2	chr15	83075640	83075840	+	644.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24465.0	NM_023475	68607.0	Mm.30056	NM_023475	ENSMUSG00000058586	Serhl	0610008B10Rik|1110019M09Rik|AU019786	serine hydrolase-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-68692761-2	chr11	68692661	68692861	+	837.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175260, intron 1 of 40)	intron (NM_175260, intron 1 of 40)	846.0	NM_175260	77579.0	Mm.218233	NM_175260	ENSMUSG00000020900	Myh10	5730504C04Rik|9330167F11Rik|Fltn|Myhn-2|Myhn2|NMHC II-B|NMHC-B|NMHCII-B|NMMHC II-b|NMMHC-B|NMMHC-IIB|SMemb|mKIAA3005	myosin, heavy polypeptide 10, non-muscle	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-28958009-4	chr13	28957911	28958111	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4312.0	NM_009238	20677.0	Mm.240627	NM_009238	ENSMUSG00000076431	Sox4	AA682046|Sox-4	SRY (sex determining region Y)-box 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-36745205-3	chr16	36745102	36745302	+	806.144409	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR40|LTR|ERVK	39760.0	NM_001145899	57738.0	Mm.281804	NM_021301	ENSMUSG00000022899	Slc15a2	8430408C16Rik|C78862|Pept2	solute carrier family 15 (H+/peptide transporter), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-23235536-4	chr16	23235420	23235620	+	847.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252505, intron 1 of 7)	intron (NM_001252505, intron 1 of 7)	9499.0	NM_001252505	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-128797045-4	chr4	128796949	128797149	+	927.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081098, intron 1 of 8)	L1M5|LINE|L1	9063.0	NM_001081098	230761.0	Mm.22616	NM_001081098	ENSMUSG00000028799	Zfp362	-	zinc finger protein 362	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-92865075-3	chr16	92864994	92865194	+	853.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39020.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-95010154-2	chr8	95010054	95010254	+	618.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_018882, intron 11 of 13)	intron (NM_018882, intron 11 of 13)	-7538.0	NM_173036	54672.0	Mm.27995	NM_173036	ENSMUSG00000060470	Adgrg3	A030001G24Rik|AW214383|Gpr97|Pb1|Pb99	adhesion G protein-coupled receptor G3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-15068344-3	chr17	15068255	15068455	+	612.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15296.0	NM_001034891	381062.0	Mm.393767	NM_183133	ENSMUSG00000036552	Ermard	2210404J11Rik|2410011O22Rik|AI448938	ER membrane associated RNA degradation	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-8850702-2	chr4	8850602	8850802	+	638.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355382, intron 22 of 36)	intron (NM_001355382, intron 22 of 36)	99378.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-23513663-2	chr17	23513563	23513763	+	570.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	-34066.0	NM_001104581	619788.0	Mm.469847	NM_001104581	ENSMUSG00000091407	Vmn2r117	EG619788|V2Rp6	vomeronasal 2, receptor 117	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-52844910-4	chr1	52844795	52844995	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146108)	promoter-TSS (NM_146108)	-143.0	NM_146108	227095.0	Mm.222063	NM_146108	ENSMUSG00000041426	Hibch	2610509I15Rik|HIBYL-COA-H	3-hydroxyisobutyryl-Coenzyme A hydrolase	protein-coding	6.60456283008013	7.25459315261803	6.59086366948564	6.70557916667518	6.33030276417947	6.33596749628496	6.73769265620816	5.73459405397801	-0.520681876234056	0.0284505409918667	0.228624985145348
Merged-chr10-59224118-4	chr10	59223994	59224194	+	998.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172939, exon 1 of 1)	3' UTR (NM_172939, exon 1 of 1)	2172.0	NM_172939	268301.0	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-88235241-3	chr1	88235141	88235341	+	846.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001281466, exon 10 of 42)	exon (NM_001281466, exon 10 of 42)	8221.0	NM_001281466	100040766.0	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	Heatr7b1	maestro heat-like repeat family member 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-54382819-4	chr14	54382704	54382904	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011405, intron 4 of 11)	intron (NM_011405, intron 4 of 11)	21963.0	NM_026936	69089.0	Mm.182340	NM_026936	ENSMUSG00000000959	Oxa1l	1810020M02Rik|AI894287	oxidase assembly 1-like	protein-coding	5.60486791222731	5.82830628094732	4.71574194709319	6.32451891639802	6.31835277434981	6.08502749770715	6.64193537849125	6.68833288538133	0.790940269479478	0.00683810581749432	0.0838891550084835
Merged-chr4-149323761-2	chr4	149323661	149323861	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10878.0	NR_131918	74310.0	Mm.440455	NR_131918	ENSMUSG00000085286	Ube4bos3	1700121F15Rik	ubiquitination factor E4B, opposite strand 3	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123455060-2	chr5	123454960	123455160	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_133917, exon 17 of 17)	3' UTR (NM_133917, exon 17 of 17)	27041.0	NM_029594	76399.0	Mm.75049	NM_029594	ENSMUSG00000029437	Il31	1700013B14Rik	interleukin 31	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-74167079-3	chr13	74167040	74167240	+	840.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41560.0	NM_177333	211446.0	Mm.261859	NM_177333	ENSMUSG00000034152	Exoc3	2810050O03Rik|E430013E20Rik|Sec6|Sec6l1	exocyst complex component 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-76614176-2	chr12	76614076	76614276	+	688.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013675, intron 15 of 35)	B4A|SINE|B4	-66251.0	NR_046044	100504549.0	Mm.440349	NR_046044	ENSMUSG00000112388	AI463170	-	expressed sequence AI463170	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31414314-2	chr14	31414214	31414414	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011894, intron 2 of 8)	intron (NM_011894, intron 2 of 8)	3363.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-120179874-4	chr6	120179776	120179976	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016718, intron 1 of 3)	intron (NM_016718, intron 1 of 3)	-13947.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	3.96442958433925	3.645645317954	4.2212135645796	3.59194710635074	3.51071571814995	4.2100429818468	4.07879282396974	4.18292386908976	0.188443852781495	0.684908972853808	0.996533206832645
Merged-chr3-107334020-4	chr3	107333917	107334117	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001045807)	promoter-TSS (NM_001045807)	-728.0	NM_001045807	229700.0	Mm.27966	NM_001045807	ENSMUSG00000048109	Rbm15	C230088J01Rik|mKIAA1438	RNA binding motif protein 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-86203552-5	chr15	86203449	86203649	+	983.2666630000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10910.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-53785598-3	chr15	53785496	53785696	+	877.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177225, intron 2 of 4)	intron (NM_177225, intron 2 of 4)	116840.0	NM_177225	320679.0	Mm.442455	NM_177225	ENSMUSG00000058656	Samd12	A830094I09Rik	sterile alpha motif domain containing 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45570378-4	chr7	45570285	45570485	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001243052)	promoter-TSS (NM_001243052)	232.0	NM_009737	12036.0	Mm.24210	NM_009737	ENSMUSG00000030826	Bcat2	Bcat(m)|Bcat-2|Eca40	branched chain aminotransferase 2, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-79145527-2	chr11	79145427	79145627	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013571, intron 1 of 17)	intron (NM_013571, intron 1 of 17)	946.0	NM_013571	16706.0	Mm.4745	NM_013571	ENSMUSG00000018334	Ksr1	AW492498|B-KSR1|D11Bhm183e|D11Bhm184e|Ksr|RSU2|hb|mKSR1	kinase suppressor of ras 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-51349829-4	chr11	51349735	51349935	+	912.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153393, intron 2 of 28)	intron (NM_153393, intron 2 of 28)	59915.0	NM_153393	237759.0	Mm.154093	NM_153393	ENSMUSG00000063564	Col23a1	2810458L13Rik|AI429655	collagen, type XXIII, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-93091062-4	chr16	93090965	93091165	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	262124.0	NR_040486	69857.0	Mm.81192	NR_040486	ENSMUSG00000100277	1810053B23Rik	1810008L18Rik|1810056K14Rik	RIKEN cDNA 1810053B23 gene	ncRNA	3.65067945936055	4.1446228649187	4.07302553080685	4.31633468088503	2.67485843673809	3.89394265631277	3.68801782672579	3.98403706484931	-0.598023305954815	0.239203072535996	0.735635286471347
Merged-chr4-53062848-2	chr4	53062748	53062948	+	608.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 30 of 49)	intron (NM_013454, intron 30 of 49)	50968.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-95768942-4	chr15	95768844	95769044	+	880.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17353.0	NR_131148	629300.0	Mm.247258	NR_131148	ENSMUSG00000115699	Gm6961	EG629300	predicted gene 6961	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-137313566-2	chr7	137313466	137313666	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_010096, exon 2 of 16)	exon (NM_010096, exon 2 of 16)	879.0	NM_001113415	13593.0	Mm.258708	NM_010096	ENSMUSG00000010476	Ebf3	3110018A08Rik|O/E-2|mKIAA4201	early B cell factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115641361-4	chr11	115641243	115641443	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13048.0	NM_001252395	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-3429213-2	chr2	3429113	3429313	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001302674, intron 2 of 13)	intron (NM_001302674, intron 2 of 13)	5082.0	NM_001302684	227525.0	Mm.23483	NM_146114	ENSMUSG00000026648	Dclre1c	9930121L06Rik|AI661365|Art|Snm1l	DNA cross-link repair 1C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-106714394-4	chr1	106714291	106714491	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177410)	promoter-TSS (NM_177410)	-101.0	NM_177410	12043.0	Mm.257460	NM_009741	ENSMUSG00000057329	Bcl2	AW986256|Bcl-2|C430015F12Rik|D630044D05Rik|D830018M01Rik	B cell leukemia/lymphoma 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-99031878-2	chr10	99031778	99031978	+	697.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-75204.0	NM_027740	382406.0	Mm.440656	NM_027740	ENSMUSG00000019952	Poc1b	4933430F16Rik|Wdr51b	POC1 centriolar protein B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-67514248-4	chr15	67514147	67514347	+	978.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	287478.0	NR_045140	69334.0	Mm.63770	NR_045140	ENSMUSG00000102069	1700012I11Rik	-	RIKEN cDNA 1700012I11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166180360-2	chr2	166180260	166180460	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24677.0	NM_028072	72043.0	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-103337157-4	chr9	103337057	103337257	+	966.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176979, intron 19 of 27)	intron (NM_176979, intron 19 of 27)	27822.0	NM_001134427	321022.0	Mm.261025	NM_175565	ENSMUSG00000032803	Cdv3	2510010F10Rik|C230084J24Rik|C79446|TPP36	carnitine deficiency-associated gene expressed in ventricle 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-90370402-2	chr6	90370302	90370502	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_030260, exon 1 of 6)	exon (NM_030260, exon 1 of 6)	908.0	NM_030260	80292.0	Mm.100116	NM_030260	ENSMUSG00000034430	Zxdc	A930012H20|B930086F11Rik|BC003332	ZXD family zinc finger C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-91711073-2	chr12	91710973	91711173	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 4 of 6)	intron (NM_175367, intron 4 of 6)	75363.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25317468-2	chr7	25317368	25317568	+	959.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001160400, exon 1 of 41)	5' UTR (NM_001160400, exon 1 of 41)	304.0	NM_001160400	269878.0	Mm.38527	NM_001160400	ENSMUSG00000045039	Megf8	AW049492|Egfl4|b2b1702.2Clo|b2b1702Clo|b2b288Clo|m687Ddg|mKIAA0817	multiple EGF-like-domains 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102439829-4	chr12	102439717	102439917	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011175)	promoter-TSS (NM_011175)	-4.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	5.54806755205837	5.47216474480823	5.28035303595531	5.4683430312814	5.58560116226857	5.37121615284122	5.82967316878674	4.882654268489	0.0141786273093424	0.96102655378162	0.998431161219273
Merged-chr8-23157415-2	chr8	23157315	23157515	+	974.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029002, intron 2 of 2)	intron (NM_029002, intron 2 of 2)	4144.0	NM_029002	74561.0	Mm.290028	NM_029002	ENSMUSG00000063672	Nkx6-3	9130417I07Rik|Nkx6.3	NK6 homeobox 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-86758795-3	chr3	86758692	86758892	+	804.333374	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077688, intron 53 of 54)	intron (NM_001077688, intron 53 of 54)	162092.0	NM_001195499	70762.0	Mm.44490	NM_027539	ENSMUSG00000028078	Dclk2	6330415M09Rik|AU044875|CL2|CLICK2|Click-II|Dcamkl2	doublecortin-like kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4338395-4	chr19	4338289	4338489	+	843.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001984, intron 12 of 20)	B3A|SINE|B2	-32167.0	NM_001290818	110355.0	Mm.254144	NM_130863	ENSMUSG00000024858	Grk2	Adrbk-1|Adrbk1|Bark-1|beta ARK|betaARK1	G protein-coupled receptor kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-34195061-4	chr10	34194955	34195155	+	985.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172508, intron 1 of 5)	intron (NM_172508, intron 1 of 5)	12496.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83058096-3	chr11	83057995	83058195	+	861.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7017.0	NM_011408	20556.0	Mm.278689	NM_011408	ENSMUSG00000072620	Slfn2	Shlf2	schlafen 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-120191373-1	chr10	120191273	120191473	+	731.25	f0_c57.idr	intron (NM_001359184, intron 1 of 11)	intron (NM_001359184, intron 1 of 11)	10224.0	NM_028679	73914.0	Mm.146194	NM_028679	ENSMUSG00000020227	Irak3	4833428C18Rik|AI563835|IRAK-M	interleukin-1 receptor-associated kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-110419019-4	chr12	110418972	110419172	+	831.766663	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-28107.0	NM_001135001	26931.0	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84687021-6	chr8	84686910	84687110	+	876.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025788, intron 1 of 5)	intron (NM_025788, intron 1 of 5)	852.0	NM_025788	66830.0	Mm.289698	NM_025788	ENSMUSG00000001910	Nacc1	2010001H03Rik|4930511N13Rik|Btbd14b|Nac1	nucleus accumbens associated 1, BEN and BTB (POZ) domain containing	protein-coding	-0.315513310665388	0.0384031707610311	-0.446804918566707	0.0701613262806461	-0.45376057246459	-0.442206479398252	-0.445978447964315	-0.449187991103219	-3.45172199199449	0.169683649544382	1
Merged-chr8-47951660-2	chr8	47951560	47951760	+	565.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133791, intron 1 of 22)	intron (NM_133791, intron 1 of 22)	38891.0	NM_133791	52357.0	Mm.235074	NM_133791	ENSMUSG00000031563	Wwc2	5330431C14Rik|AU022508|C85457|D8Ertd594e	WW, C2 and coiled-coil domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134673892-4	chr6	134673783	134673983	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170479, intron 2 of 3)	MTEa|LTR|ERVL-MaLR	32943.0	NM_026371	67774.0	Mm.41892	NM_026371	ENSMUSG00000042992	Borcs5	5830457J20Rik|AW124643|Loh12cr1	BLOC-1 related complex subunit 5	protein-coding	4.55035323420416	4.52560799089224	3.35740636035319	4.21986984339373	3.47052290418842	4.6062864563826	3.77191884486883	4.47809090887945	-0.114214938432431	0.811758945514119	0.998431161219273
Merged-chr11-19955874-4	chr11	19955767	19955967	+	963.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033523, intron 1 of 5)	B4|SINE|B4	31425.0	NM_033523	114716.0	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-83519621-2	chr12	83519521	83519721	+	594.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030246)	promoter-TSS (NM_030246)	-845.0	NM_030246	73828.0	Mm.38238	NM_030246	ENSMUSG00000021222	Dcaf4	1110018E21Rik|Wdr21	DDB1 and CUL4 associated factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-69808855-8	chr8	69808767	69808967	+	993.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198101, intron 1 of 20)	intron (NM_198101, intron 1 of 20)	180.0	NM_198101	78816.0	Mm.324305	NM_198101	ENSMUSG00000036246	Gmip	5031419I10Rik	Gem-interacting protein	protein-coding	0.457893553675113	1.37040816859797	0.299949202286032	0.291636566629013	0.617752884547826	1.28635925899205	0.302303613222139	0.293097536941377	-0.0191261920945191	0.991609349712364	0.998431161219273
Merged-chr16-87784672-2	chr16	87784572	87784772	+	597.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	85718.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-126673561-4	chr2	126673450	126673650	+	865.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271470, intron 1 of 8)	intron (NM_001271470, intron 1 of 8)	1802.0	NM_001355109	14391.0	Mm.293266	NM_010249	ENSMUSG00000027361	Gabpb1	BABPB2|E4TF1|E4TF1-47|E4TF1-53|E4Tf1B|GABPB|GABPB-1|GABPB-2|GABPB1-1|GABPB1-2|NRF2B1|NRF2B2	GA repeat binding protein, beta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-99342662-4	chr5	99342564	99342764	+	946.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 3 of 3)	ORR1B1|LTR|ERVL-MaLR	-89737.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	4.23187996792342	4.18381631580348	4.78046932327659	4.34687219772192	4.21770605855879	4.41283895902563	4.49654884424659	4.90150680286899	0.159125592513898	0.683295303516431	0.995882295196263
Merged-chr7-16816277-4	chr7	16816167	16816367	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_133789, exon 1 of 18)	5' UTR (NM_133789, exon 1 of 18)	378.0	NM_001039878	97387.0	Mm.21612	NM_133789	ENSMUSG00000030374	Strn4	C80611|ZIN|zinedin	striatin, calmodulin binding protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-172977858-2	chr2	172977765	172977965	+	584.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1977.0	NM_012046	26972.0	Mm.23495	NM_012046	ENSMUSG00000005883	Spo11	AI449549|Spo11a|Spo11b	SPO11 meiotic protein covalently bound to DSB	protein-coding	1.18867246928255	0.877615210682266	2.27938409488683	0.841253959753866	1.69343379637686	1.53318515093894	1.96540462721918	0.844099586201267	0.298355347646338	0.826225144401604	0.998431161219273
Merged-chr15-80035054-4	chr15	80034962	80035162	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20254.0	NM_011057	18591.0	Mm.144089	NM_011057	ENSMUSG00000000489	Pdgfb	PDGF-B|Sis	platelet derived growth factor, B polypeptide	protein-coding	3.38309710015763	2.329069549756	3.8038338559909	2.61278941226334	2.49440252351527	1.90768508458201	3.1302856696524	2.74250740031301	-0.942190181456256	0.207019294536411	0.695098179808171
Merged-chr5-139380956-1	chr5	139380856	139381056	+	1000.0	f0_c57.idr	TTS (NR_033147)	TTS (NR_033147)	317.0	NM_030258	80290.0	Mm.270003	NM_030258	ENSMUSG00000044197	Gpr146	BC003323|D830046C22Rik|PGR8	G protein-coupled receptor 146	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-92250575-4	chr9	92250428	92250628	+	993.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011636, intron 1 of 8)	CpG	334.0	NM_011636	22038.0	Mm.421956	NM_011636	ENSMUSG00000032369	Plscr1	MmTRA1a|MmTRA1b|Nor1|Tra1|Tra1a|Tra1b|Tras1|Tras2	phospholipid scramblase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-108911915-6	chr8	108912031	108912231	+	888.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007496, intron 4 of 9)	intron (NM_007496, intron 4 of 9)	-24729.0	NR_037295	100526511.0		NR_037295	ENSMUSG00000093241	Mir3108	mir-3108|mmu-mir-3108	microRNA 3108	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-51176423-2	chr14	51176323	51176523	+	680.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14163.0	NM_019398	54159.0	Mm.377125	NM_019398	ENSMUSG00000059606	Rnase2b	Ear5|Raf4|mR5	ribonuclease, RNase A family, 2B (liver, eosinophil-derived neurotoxin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-154658068-4	chr2	154657956	154658156	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029362, intron 1 of 4)	intron (NM_029362, intron 1 of 4)	1030.0	NM_029362	75608.0	Mm.262480	NM_029362	ENSMUSG00000038467	Chmp4b	2010012F05Rik|C76846|Snf7-2	charged multivesicular body protein 4B	protein-coding	5.77679369320565	6.09189231047684	5.42319722660271	4.76391544680905	5.00237967340874	5.55739935511311	5.33669702571101	4.74316630001142	-0.466907548086503	0.164406600468545	0.627932209944809
Merged-chr14-79481142-5	chr14	79481059	79481259	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007920)	promoter-TSS (NM_007920)	-35.0	NM_007920	13709.0	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-82923705-4	chr10	82923608	82923808	+	998.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	57082.0	NM_025499	66341.0	Mm.443284	NM_025499	ENSMUSG00000109864	Eid3	1700027M21Rik|NS4EB	EP300 interacting inhibitor of differentiation 3	protein-coding	0.218099313614163	0.23799981056124	0.231492794649586	0.762639091503629	0.875834736294477	0.239465087881559	0.414808577794811	0.769690633576795	1.37430580763008	0.484535254531424	1
Merged-chr2-29788252-4	chr2	29788145	29788345	+	923.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290496)	promoter-TSS (NM_001290496)	-574.0	NM_001290495	227682.0	Mm.245739	NM_145520	ENSMUSG00000039826	Trub2	G430055L02Rik	TruB pseudouridine (psi) synthase family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-70868456-1	chr16	70868356	70868556	+	559.0	f0_balb.idr	Intergenic	Intergenic	252031.0	NR_040474	52645.0	Mm.188475	NR_040474		D16Ertd519e	-	DNA segment, Chr 16, ERATO Doi 519, expressed	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71598773-4	chr17	71598701	71598901	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015549)	promoter-TSS (NR_015549)	-40.0	NR_027952	68789.0	Mm.75202	NR_015549	ENSMUSG00000085492	Trmt61b	1110039F03Rik|623451|Gm6431	tRNA methyltransferase 61B	ncRNA	6.44449270557814	6.44608424209329	5.88042951573683	6.28532392746967	6.43736437180937	6.23714259586983	6.33256392280639	6.21402717651325	0.0287756448581161	0.893609686684809	0.998431161219273
Merged-chr15-76758583-3	chr15	76758485	76758685	+	910.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198420, intron 2 of 10)	intron (NM_198420, intron 2 of 10)	-34740.0	NM_176828	223665.0	Mm.291713	NM_145472	ENSMUSG00000116138	C030006K11Rik	1110033I13Rik	RIKEN cDNA C030006K11 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-86438644-2	chr1	86438544	86438744	+	691.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	12315.0	NM_027966	71863.0	Mm.179627	NM_027966	ENSMUSG00000036574	Tex44	1700019O17Rik	testis expressed 44	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-79354755-2	chr8	79354655	79354855	+	800.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008539, intron 3 of 6)	intron (NM_008539, intron 3 of 6)	44713.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-39005110-4	chr2	39004989	39005189	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025592)	promoter-TSS (NM_025592)	42.0	NM_025592	66489.0	Mm.345333	NM_025592	ENSMUSG00000062997	Rpl35	2410039E09Rik	ribosomal protein L35	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-68916156-2	chr11	68916056	68916256	+	608.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	10925.0	NM_145746	252868.0	Mm.76826	NM_145746	ENSMUSG00000032921	Odf4	Oppo1	outer dense fiber of sperm tails 4	protein-coding	-0.961808289013217	-0.941143281918953	-0.953353259954851	-0.9565109400711	-0.961015840561242	-0.938024035002784	0.030272756003758	-0.955957512668286	3.38343409954699	0.275427317743097	1
Merged-chr16-55754594-4	chr16	55754491	55754691	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	67547.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-11596834-4	chr2	11596711	11596911	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152824, intron 3 of 11)	intron (NM_152824, intron 3 of 11)	6388.0	NM_152824	76938.0	Mm.182769	NM_152824	ENSMUSG00000037197	Rbm17	2700027J02Rik	RNA binding motif protein 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127744742-3	chr10	127744665	127744865	+	907.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_198035, exon 2 of 2)	3' UTR (NM_198035, exon 2 of 2)	5227.0	NM_198035	320080.0	Mm.27258	NM_198035	ENSMUSG00000044617	Zbtb39	7030401O21Rik|mKIAA0352	zinc finger and BTB domain containing 39	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-74433454-2	chr17	74433354	74433554	+	705.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033367, intron 8 of 8)	intron (NM_001033367, intron 8 of 8)	25654.0	NM_001033367	268973.0	Mm.311884	NM_001033367	ENSMUSG00000039193	Nlrc4	9530011P19Rik|CLAN|CLAN1|CLANA|CLANB|CLANC|CLAND|Card12|IPAF	NLR family, CARD domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-44632313-3	chr10	44632171	44632371	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-173523.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-133494717-2	chr2	133494617	133494817	+	552.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57442.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84845925-5	chr8	84845722	84845922	+	880.453369	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007591, intron 3 of 8)	intron (NM_007591, intron 3 of 8)	1109.0	NM_007591	12317.0	Mm.1971	NM_007591	ENSMUSG00000003814	Calr	CRT|Calregulin	calreticulin	protein-coding	0.799243547339627	0.533637217064134	0.32813266867353	0.322484393725801	0.708782942198392	0.538893135031305	0.329744163463153	1.14768954879662	1.2367648096483	0.48796997346738	1
Merged-chr17-12318807-4	chr17	12318711	12318911	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045290)	promoter-TSS (NR_045290)	-15.0	NM_001357722	26407.0	Mm.28587	NM_011948	ENSMUSG00000014426	Map3k4	D17Rp17|D17Rp17e|MAPKKK4|MEKK 4|MTK1|Mek4b|Mekk4|RP17|Rp17a|Tas|mKIAA0213	mitogen-activated protein kinase kinase kinase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-55310366-4	chr9	55310250	55310450	+	975.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16563.0	NM_172923	244886.0	Mm.24361	NM_172923	ENSMUSG00000032313	Tmem266	9630029F15|AI118078|HVRP1	transmembrane protein 266	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-91740535-2	chr6	91740435	91740635	+	614.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009320, intron 7 of 14)	intron (NM_009320, intron 7 of 14)	56468.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90467164-2	chr2	90467064	90467264	+	661.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 5 of 23)	MTB_Mm|LTR|ERVL-MaLR	12010.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-15759881-2	chr13	15759781	15759981	+	812.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42749.0	NR_045507	71071.0	Mm.380845	NR_045507	ENSMUSG00000113960	4933412O06Rik	-	RIKEN cDNA 4933412O06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-54173781-2	chr10	54173681	54173881	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	97859.0	NR_038016	100502920.0	Mm.403982	NR_038016	ENSMUSG00000097069	Gm16998	-	predicted gene, 16998	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-32163230-2	chr16	32163130	32163330	+	948.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_146069, exon 2 of 4)	5' UTR (NM_146069, exon 2 of 4)	2364.0	NM_146069	224109.0	Mm.33498	NM_146069	ENSMUSG00000052384	Nrros	E430025L02Rik|Lrcc33|Lrrc33	negative regulator of reactive oxygen species	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-121596752-4	chr10	121596580	121596780	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359618, intron 22 of 24)	intron (NM_001359618, intron 22 of 24)	-9886.0	NM_019786	56480.0	Mm.34580	NM_019786	ENSMUSG00000020115	Tbk1	1200008B05Rik|AI462036|AW048562	TANK-binding kinase 1	protein-coding	4.61081282926632	4.99300583080926	4.65896871543941	5.14566895559632	4.79087548452328	5.39814111521483	4.74097614052355	5.31321075535626	0.263662810670309	0.432279921847118	0.904679012727573
Merged-chr1-80181212-2	chr1	80181112	80181312	+	870.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32732.0	NM_173425	241128.0	Mm.145511	NM_173425	ENSMUSG00000043230	Fam124b	A830043J08Rik	family with sequence similarity 124, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-29491211-3	chr7	29491110	29491310	+	955.361084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081028, intron 2 of 22)	intron (NM_001081028, intron 2 of 22)	14250.0	NM_001081028	74206.0	Mm.447042	NM_001081028	ENSMUSG00000030583	Sipa1l3	2610511M17Rik	signal-induced proliferation-associated 1 like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-79955882-2	chr10	79955782	79955982	+	655.75	f1_balb.idr|f1_c57bl6.idr	TTS (NM_007880)	TTS (NM_007880)	-4270.0	NM_175450	216156.0	Mm.35828	NM_175450	ENSMUSG00000035754	Wdr18	2310012I10Rik|AU044733|AW122032	WD repeat domain 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47612259-2	chr17	47612159	47612359	+	731.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016859)	promoter-TSS (NM_016859)	663.0	NM_020048	56771.0	Mm.59393	NM_020048	ENSMUSG00000092558	Med20	1110011O05Rik|2410115I17Rik|AU018348|Trfp	mediator complex subunit 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75051987-4	chr11	75051901	75052101	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001002764, intron 12 of 18)	intron (NM_001002764, intron 12 of 18)	13990.0	NR_030454	735274.0		NR_030454	ENSMUSG00000106252	Mir684-1	Mirn684-1	microRNA 684-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70674715-4	chr11	70674612	70674812	+	918.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_178116, exon 15 of 23)	exon (NM_178116, exon 15 of 23)	-5296.0	NM_001167669	216873.0	Mm.432524	NM_172561	ENSMUSG00000018287	Spag7	5730443G10|ACRP|FSA-1|Fsa1l	sperm associated antigen 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-90204755-2	chr9	90204655	90204855	+	569.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_194334, exon 13 of 13)	3' UTR (NM_194334, exon 13 of 13)	41777.0	NM_001311115	108153.0	Mm.102141	NM_001003911	ENSMUSG00000032363	Adamts7	ADAM-TS7|ADAMTS7B	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-35741305-4	chr13	35741210	35741410	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001123386)	promoter-TSS (NM_001123386)	-92.0	NM_001123386	12593.0	Mm.29002	NM_009881	ENSMUSG00000059288	Cdyl	AI325931	chromodomain protein, Y chromosome-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-30071282-2	chr16	30071182	30071382	+	629.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	5925.0	NM_008235	15205.0	Mm.390859	NM_008235	ENSMUSG00000022528	Hes1	Hry|bHLHb39	hes family bHLH transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-105976399-4	chr1	105976292	105976492	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13890.0	NR_151625	635504.0	Mm.359717	NR_151625		Gm7160	EG635504	predicted gene 7160	ncRNA	3.39756525513333	3.47284866619919	3.52451131459653	3.26657223288887	3.42468491574661	3.49762336240516	3.55093199860071	3.09454589145313	-0.024752694239617	0.963239552757268	0.998431161219273
Merged-chr13-105294298-4	chr13	105294113	105294313	+	978.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360891, intron 1 of 7)	CpG	272.0	NM_001360890	71816.0	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-18892407-4	chr7	18892322	18892522	+	821.18335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033314, intron 10 of 13)	CpG	7732.0	NM_009402	21946.0	Mm.21855	NM_009402	ENSMUSG00000030413	Pglyrp1	PGRP|PGRP-S|Pglyrp|Tag7|Tasg7|Tnfsf3l	peptidoglycan recognition protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-69060852-2	chr3	69060752	69060952	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-16110.0	NM_025863	66949.0	Mm.176695	NM_025863	ENSMUSG00000034317	Trim59	2310035M22Rik|2700022F13Rik|Mrf1|TSBF1	tripartite motif-containing 59	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-114893993-4	chr6	114893907	114894107	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356371, intron 2 of 5)	intron (NM_001356371, intron 2 of 5)	27814.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81520227-4	chr10	81520136	81520336	+	948.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010304, intron 1 of 6)	intron (NM_010304, intron 1 of 6)	3989.0	NM_010304	14676.0	Mm.1546	NM_010304	ENSMUSG00000034792	Gna15	G[a]15|Galpha15	guanine nucleotide binding protein, alpha 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28692092-4	chr17	28692014	28692214	+	925.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357724)	promoter-TSS (NM_001357724)	-454.0	NM_001168513	26416.0	Mm.311337	NM_011951	ENSMUSG00000053436	Mapk14	CSBP2|Crk1|Csbp1|Mxi2|PRKM14|PRKM15|p38|p38-alpha|p38MAPK|p38a|p38alpha	mitogen-activated protein kinase 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-134455629-4	chr5	134455535	134455735	+	949.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081462, intron 1 of 29)	intron (NM_001081462, intron 1 of 29)	627.0	NM_001081465	57080.0	Mm.332735	NM_020331	ENSMUSG00000023079	Gtf2ird1	1700012P16Rik|BEN|Cream1|ESTM9|GTF3|Gtf2il|MusTRD1|Tg(Alb1-Myc)166.8Sst|WBSCR11|X83320	general transcription factor II I repeat domain-containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-107402295-4	chr1	107402190	107402390	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20399.0	NM_027548	116872.0	Mm.66015	NM_027548	ENSMUSG00000067001	Serpinb7	4631416M05Rik|megsin|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-45774533-2	chr6	45774433	45774633	+	558.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001004357, intron 3 of 23)	Lx2|LINE|L1	714472.0	NM_001004357	66797.0	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-71213868-4	chr9	71213757	71213957	+	932.81665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110518, intron 2 of 3)	intron (NR_110518, intron 2 of 3)	1384.0	NR_110519	100041660.0	Mm.487231	NR_110518		Gm3458	-	predicted gene 3458	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-45856171-4	chr5	45856064	45856264	+	993.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359873, intron 1 of 4)	intron (NM_001359873, intron 1 of 4)	388.0	NM_001359872	209707.0	Mm.71498	NM_172153	ENSMUSG00000015882	Lcorl	Mlr1	ligand dependent nuclear receptor corepressor-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-130037767-2	chr7	130037667	130037867	+	728.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	75602.0	NR_046077	100043150.0	Mm.334264	NR_046077	ENSMUSG00000108504	Gm4265	-	predicted gene 4265	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118222552-4	chr11	118222451	118222651	+	953.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	-9809.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-57915424-2	chr4	57915324	57915524	+	654.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178727, intron 1 of 1)	intron (NM_178727, intron 1 of 1)	840.0	NM_178727	242484.0	Mm.23214	NM_178727	ENSMUSG00000052117	D630039A03Rik	-	RIKEN cDNA D630039A03 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-98089553-4	chr15	98089457	98089657	+	959.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144851, intron 1 of 17)	intron (NM_144851, intron 1 of 17)	-3032.0	NM_001163488	18642.0	Mm.272582	NM_021514	ENSMUSG00000033065	Pfkm	AI131669|ATP-PFK|PFK-A|PFK-M|Pfk-4|Pfk4|Pfka|Pfkx	phosphofructokinase, muscle	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-43259540-2	chr15	43259440	43259640	+	893.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008388, intron 10 of 12)	intron (NM_008388, intron 10 of 12)	23196.0	NM_008388	16341.0	Mm.289992	NM_008388	ENSMUSG00000022336	Eif3e	48kDa|Eif3s6|Int6|eIF3-p46|eIF3-p48	eukaryotic translation initiation factor 3, subunit E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-85250511-4	chr11	85250391	85250591	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	15325.0	NR_028329	654810.0	Mm.209580	NR_028329	ENSMUSG00000085628	Appbp2os	D630032N06Rik	amyloid beta precursor protein (cytoplasmic tail) binding protein 2, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-65883749-2	chr17	65883667	65883867	+	991.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009067, intron 1 of 9)	intron (NM_009067, intron 1 of 9)	1156.0	NM_001198949	19765.0	Mm.17009	NM_009067	ENSMUSG00000024096	Ralbp1	RLIP76|Rip1	ralA binding protein 1	protein-coding	1.5537705842614	0.68770176630916	1.544320816019	1.16128737584797	0.651243650630084	1.3997953553191	0.677947561130439	0.863885303872434	-1.4744757645029	0.332211379828203	0.833345452772687
Merged-chr11-84522803-3	chr11	84522702	84522902	+	884.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008498, intron 1 of 4)	CpG	2732.0	NM_008498	16869.0	Mm.4965	NM_008498	ENSMUSG00000018698	Lhx1	Lim1	LIM homeobox protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-77531912-4	chr10	77531806	77532006	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008404, intron 1 of 15)	intron (NM_008404, intron 1 of 15)	1558.0	NM_008404	16414.0	Mm.1137	NM_008404	ENSMUSG00000000290	Itgb2	2E6|AI528527|Cd18|LAD|LCAMB|Lfa1|MF17	integrin beta 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-41377800-4	chr4	41377698	41377898	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355509, intron 3 of 5)	intron (NM_001355509, intron 3 of 5)	25835.0	NM_001355508	67123.0	Mm.289795	NM_023305	ENSMUSG00000028437	Ubap1	2700092A01Rik|NAG20|UBAP-1|Ubap	ubiquitin-associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-9495166-4	chr18	9495078	9495278	+	999.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-45024.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107976210-2	chr9	107976110	107976310	+	673.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_023738, intron 3 of 23)	intron (NM_023738, intron 3 of 23)	643.0	NM_023738	74153.0	Mm.277125	NM_023738	ENSMUSG00000032596	Uba7	1300004C08Rik|Ube1l	ubiquitin-like modifier activating enzyme 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-136180161-4	chr4	136180051	136180251	+	973.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001305399)	promoter-TSS (NM_001305399)	-631.0	NM_001305399	242705.0	Mm.307932	NM_177733	ENSMUSG00000018983	E2f2	E2F-2	E2F transcription factor 2	protein-coding	4.29234293453957	4.28779221952222	3.701921396598	4.45917888220079	4.55979422237263	4.44003864665897	4.56203783955224	4.17642206321396	0.29595744173526	0.461191534476844	0.920953234475195
Merged-chr8-79492047-1	chr8	79491947	79492147	+	898.0	f0_balb.idr	Intergenic	Intergenic	-92579.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-25148671-2	chr12	25148571	25148771	+	783.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19497.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-88720843-4	chr5	88720727	88720927	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026735)	promoter-TSS (NM_026735)	-44.0	NM_026735	68473.0	Mm.35764	NM_026735	ENSMUSG00000006262	Mob1b	1110003E08Rik|AU015450|B230364F10|Mobkl1a	MOB kinase activator 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126696599-4	chr8	126696496	126696696	+	988.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-103160.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	1.15150008543936	0.58866468212574	0.391510924523987	0.548287464047628	0.523087002471679	0.593760895705149	0.720517185236992	0.690762889533874	-0.502774798673442	0.752933189730632	1
Merged-chr10-75318427-3	chr10	75318329	75318529	+	964.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001331095, intron 1 of 2)	intron (NM_001331095, intron 1 of 2)	829.0	NM_001331095	11540.0	Mm.333734	NM_009630	ENSMUSG00000020178	Adora2a	A2AAR|A2aR|AA2AR	adenosine A2a receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97998114-2	chr11	97998014	97998214	+	816.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1941.0	NR_152188	217151.0	Mm.277896	NM_207231	ENSMUSG00000038352	Arl5c	Arl12|BC065791	ADP-ribosylation factor-like 5C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-72216044-4	chr8	72215906	72216106	+	968.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3169.0	NM_001080812	234421.0	Mm.211247	NM_001080812	ENSMUSG00000074240	Cib3	C730014M21Rik|Gm1107|KIP3	calcium and integrin binding family member 3	protein-coding	2.85986454696832	2.98107201142957	3.20849605562669	2.51691025145348	3.43411424926841	3.76079704309853	3.32707250700708	3.93565825358217	1.18562316435731	0.0409510672404087	0.288791675989669
Merged-chr16-33944920-2	chr16	33944820	33945020	+	938.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 12 of 14)	intron (NM_001145884, intron 12 of 14)	22118.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-45922522-3	chr1	45922415	45922615	+	907.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016917, intron 2 of 7)	URR1B|DNA|hAT-Charlie	3079.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-87832274-4	chr10	87832171	87832371	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25994.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-151283305-2	chr4	151283191	151283391	+	577.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081557, intron 6 of 23)	intron (NM_001081557, intron 6 of 23)	193721.0	NM_001308446	105704528.0	Mm.415128	NM_001308446	ENSMUSG00000078491	Gm13090	-	predicted gene 13090	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167807072-2	chr2	167806972	167807172	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	115895.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-113647929-3	chr5	113647868	113648068	+	943.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008153, intron 1 of 2)	B4|SINE|B4	2422.0	NM_008153	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-34567631-2	chr19	34567531	34567731	+	728.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355262, intron 1 of 2)	ORR1F|LTR|ERVL-MaLR	-15898.0	NM_010501	15959.0	Mm.426079	NM_010501	ENSMUSG00000074896	Ifit3	Ifi49|P49	interferon-induced protein with tetratricopeptide repeats 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-32112116-4	chr19	32112071	32112271	+	906.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9031.0	NM_018830	54447.0	Mm.491229	NM_018830	ENSMUSG00000024887	Asah2	AI585898	N-acylsphingosine amidohydrolase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117964293-2	chr11	117964193	117964393	+	912.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5073.0	NM_007707	12702.0	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-65690823-7	chr18	65690730	65690930	+	994.4285890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7438.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	3.14487712053974	3.52820712787416	1.91901760089846	2.84889686194228	2.71789217528274	3.83940487141912	3.94533689278019	2.86437807294559	0.761557891792991	0.267749332650726	0.770373259746622
Merged-chr7-142610811-2	chr7	142610711	142610911	+	566.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32665.0	NR_130973	14955.0	Mm.14802	NR_001592	ENSMUSG00000000031	H19	AI747191|EyeLinc6	H19, imprinted maternally expressed transcript	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-53746408-2	chr18	53746262	53746462	+	850.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1815.0	NM_178686	225523.0	Mm.193678	NM_178686	ENSMUSG00000048799	Cep120	A230075C01|AU016693|Ccdc100	centrosomal protein 120	protein-coding	0.4411026474455	0.923632582485084	0.313527197093165	0.308481948642535	0.776703445834973	0.321541915097973	0.77136666080003	0.612759936839619	0.659018838202251	0.71356336828593	1
Merged-chr18-58583279-2	chr18	58583176	58583376	+	567.5	f0_balb.idr|f1_balb.idr	intron (NM_001081072, intron 4 of 9)	intron (NM_001081072, intron 4 of 9)	27036.0	NM_001081072	225579.0	Mm.258517	NM_001081072	ENSMUSG00000024600	Slc27a6	4732438L20Rik|FACVL2|FATP6|VLCS-H1	solute carrier family 27 (fatty acid transporter), member 6	protein-coding	1.93019807371802	3.40849367639815	2.53337931292118	1.6414631248505	2.22944453712073	3.06188145171013	2.11756791125455	2.86713442800004	0.11061757661191	0.896963677432463	0.998431161219273
Merged-chr17-35423661-3	chr17	35423560	35423760	+	879.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER44A|DNA|TcMar-Tigger	-1187.0	NM_023124	15019.0	Mm.486287	NM_023124		H2-Q8	H-2Q8|MMS10-T|Ms10t|Qa-2|Qa-8|Qa8	histocompatibility 2, Q region locus 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-14784690-2	chr18	14784583	14784783	+	983.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001100449, intron 1 of 14)	intron (NM_001100449, intron 1 of 14)	1438.0	NM_001100449	72504.0	Mm.312233	NM_001100449	ENSMUSG00000054321	Taf4b	105kDa|2610524B04Rik|4932409F03Rik|AW987595|TAFII-105|TAFII105|Taf2c2	TATA-box binding protein associated factor 4b	protein-coding	0.0848055625196713	-0.358944571982527	0.18766882937551	-0.365839868895906	-0.370063766928488	-0.167420160962051	-0.361983275290763	-0.365316646001903	-2.59343622824957	0.301872904345688	1
Merged-chr8-68205588-3	chr8	68205486	68205686	+	577.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70942.0	NM_028182	72281.0	Mm.40974	NM_028182	ENSMUSG00000053886	Sh2d4a	2210402M20Rik|SH2A	SH2 domain containing 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-119403135-3	chr9	119403024	119403224	+	818.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007397, intron 1 of 9)	CpG	946.0	NM_001313757	11481.0	Mm.8940	NM_007397	ENSMUSG00000061393	Acvr2b	4930516B21Rik|ActRIIB	activin receptor IIB	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-11038525-4	chr8	11038420	11038620	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_046017, intron 1 of 4)	intron (NR_046017, intron 1 of 4)	-30090.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4935455-2	chr16	4935355	4935555	+	585.666626	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_037666, exon 3 of 3)	non-coding (NR_037666, exon 3 of 3)	-3656.0	NM_001316715	66911.0	Mm.428698	NM_025839	ENSMUSG00000022516	Nudt16l1	1110001K21Rik|5330437I08Rik|Sdos	nudix (nucleoside diphosphate linked moiety X)-type motif 16-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-88584801-2	chr1	88584701	88584901	+	598.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33284.0	NR_037971	100503197.0	Mm.99352	NR_037971	ENSMUSG00000100798	Gm19589	-	predicted gene, 19589	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-3212952-3	chr5	3212859	3213059	+	641.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-130934.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-55593021-2	chr3	55592921	55593121	+	620.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	131293.0	NM_001357476	13175.0	Mm.393242	NM_019978	ENSMUSG00000027797	Dclk1	1700113D08Rik|2810480F11Rik|AI836758|Click-I|Cpg16|Dcamkl1|Dcl|Dclk|mKIAA0369	doublecortin-like kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-70824059-2	chr12	70823959	70824159	+	638.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1455.0	NM_028127	319710.0	Mm.2962	NM_028127	ENSMUSG00000048285	Frmd6	2610019M19Rik|4930488L10Rik|AW212977|Willin	FERM domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-77960545-2	chr10	77960445	77960645	+	711.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_138301, intron 4 of 33)	L1MDa|LINE|L1	9327.0	NM_138301	28240.0	Mm.276762	NM_138301	ENSMUSG00000009292	Trpm2	9830168K16Rik|C79133|LTRPC2|TRPC7|Trp7|Trrp7	transient receptor potential cation channel, subfamily M, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-112451758-3	chr1	112451657	112451857	+	770.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-586839.0	NM_001081316	319901.0	Mm.103468	NM_001081316	ENSMUSG00000038702	Dsel	9330132E09Rik|DS-epi2	dermatan sulfate epimerase-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-78734450-2	chr14	78734350	78734550	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1721.0	NM_001081336	380921.0	Mm.89591	NM_001081336	ENSMUSG00000034731	Dgkh	5930402B05Rik|D130015C16|DGK	diacylglycerol kinase, eta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-124229429-2	chr8	124229333	124229533	+	714.916626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-1961.0	NM_139272	108148.0	Mm.33808	NM_139272	ENSMUSG00000089704	Galnt2	AI480629	polypeptide N-acetylgalactosaminyltransferase 2	protein-coding	1.73971223856057	2.39857818655677	1.10923947284923	0.821685588856435	1.38021003772968	0.873118185494307	2.54608859272848	0.825308602047448	-0.0910229338606495	0.945940891724475	0.998431161219273
Merged-chr1-184589507-1	chr1	184589407	184589607	+	647.0	f0_balb.idr	Intergenic	Intergenic	-31816.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-13681778-3	chr9	13681684	13681884	+	816.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173776, intron 1 of 3)	intron (NM_173776, intron 1 of 3)	19324.0	NM_173776	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-88771208-3	chr18	88771161	88771361	+	934.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	122946.0	NM_018821	54607.0	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-116290318-4	chr3	116290209	116290409	+	985.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001173553, intron 13 of 13)	intron (NM_001173553, intron 13 of 13)	-36825.0	NM_022427	64378.0	Mm.40025	NM_022427	ENSMUSG00000068696	Gpr88	AW061286|Strg	G-protein coupled receptor 88	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-13301236-4	chr10	13301143	13301343	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195065, intron 1 of 12)	intron (NM_001195065, intron 1 of 12)	23046.0	NM_001195096	215789.0	Mm.283359	NM_001033257	ENSMUSG00000062866	Phactr2	AV158170|BC012871	phosphatase and actin regulator 2	protein-coding	6.24819353681205	6.22147561072013	6.15109376390957	6.03141454424953	6.24734742952971	6.41197197043957	6.62393170276171	6.3710806766118	0.272476847360816	0.187514876846611	0.664995221281668
Merged-chr5-36462975-4	chr5	36462846	36463046	+	920.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_126490, intron 1 of 1)	intron (NR_126490, intron 1 of 1)	1908.0	NR_126490	76710.0	Mm.165495	NR_126488	ENSMUSG00000039563	2210406O10Rik	-	RIKEN cDNA 2210406O10 gene	ncRNA	-0.630467091185053	0.00620375848711519	-0.622898624218533	-0.625743962992022	-0.62976452979443	-0.618379165981765	-0.622085201872254	-0.185896262206505	-0.677181471411444	0.813299707352998	1
Merged-chr2-120027502-4	chr2	120027377	120027577	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001114637)	promoter-TSS (NM_001114637)	-6.0	NR_104353	102238433.0	Mm.41467	NR_104353	ENSMUSG00000033852	Gm28042	Jmjd7-pla2g4b	predicted gene, 28042	ncRNA	1.5004911131791	2.26564178204061	1.17130029260641	2.31466398046872	2.12074578558691	1.20467817674408	2.57534097876103	2.01884234233549	0.407814680364235	0.708971724394289	0.998431161219273
Merged-chr19-58910941-2	chr19	58910841	58911041	+	624.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_037247)	TTS (NR_037247)	818.0	NR_037247	100526480.0		NR_037247	ENSMUSG00000092813	Mir3086	mir-3086|mmu-mir-3086	microRNA 3086	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118927161-2	chr9	118927079	118927279	+	993.2999880000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_133710, intron 1 of 7)	intron (NM_133710, intron 1 of 7)	643.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-51585792-2	chr11	51585692	51585892	+	848.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_028398, intron 2 of 12)	intron (NM_028398, intron 2 of 12)	1035.0	NM_028398	72947.0	Mm.256875	NM_028398	ENSMUSG00000020359	Phykpl	2900006B13Rik|Agxt2l2	5-phosphohydroxy-L-lysine phospholyase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-84680983-3	chr15	84680904	84681104	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146061)	promoter-TSS (NM_146061)	6.0	NM_146061	109270.0	Mm.291372	NM_146061	ENSMUSG00000036106	Prr5	AU043908|Arhgap8|C030017C09Rik|C78947|Protor-1|Protor1	proline rich 5 (renal)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-118448407-3	chr1	118448304	118448504	+	745.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359330, intron 2 of 39)	intron (NM_001359330, intron 2 of 39)	10861.0	NR_027901	68204.0	Mm.443536	NR_027901	ENSMUSG00000107722	2900060B14Rik	-	RIKEN cDNA 2900060B14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-99334208-4	chr5	99334095	99334295	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-81268.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122444600-4	chr8	122444481	122444681	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_015497)	TTS (NR_015497)	925.0	NR_045696	100689703.0	Mm.271989	NR_045696		9330133O14Rik	-	RIKEN cDNA 9330133O14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-47255103-2	chr19	47255003	47255203	+	938.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163480, intron 4 of 5)	intron (NM_001163480, intron 4 of 5)	18486.0	NR_105961	102466782.0		NR_105961	ENSMUSG00000098786	Mir6995	Gm27576|mmu-mir-6995	microRNA 6995	ncRNA	-0.986117776978398	-1.33156256825259	-1.34133402424827	-1.34936058913999	-1.21427833167172	-1.32944505297573	-1.33912198079506	-1.34792383786197	-0.98711403806483	0.775821656509867	1
Merged-chr5-88769863-2	chr5	88769763	88769963	+	564.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007832, intron 2 of 6)	B3|SINE|B2	4850.0	NM_007832	13178.0	Mm.298892	NM_007832	ENSMUSG00000029366	Dck	-	deoxycytidine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-40703850-1	chr19	40703750	40703950	+	548.0	f1_balb.idr	intron (NM_009848, intron 1 of 9)	B4A|SINE|B4	44080.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	-0.83996846249558	-0.828547193138794	-0.647379056143034	-0.835674786138241	-0.0871840890788399	-0.825642708600392	-0.832352708005691	-0.835223255453849	2.27297349449074	0.444358631196769	1
Merged-chr8-117199835-2	chr8	117199735	117199935	+	723.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081151, intron 9 of 10)	intron (NM_001081151, intron 9 of 10)	41700.0	NM_001081151	209239.0	Mm.132992	NM_001081151	ENSMUSG00000052557	Gan	A330045G18|gigaxonin	giant axonal neuropathy	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45119702-2	chr7	45119602	45119802	+	567.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-2055.0	NR_029560	387168.0		NR_029560	ENSMUSG00000065495	Mir150	Mirn150|mir-150|mmu-mir-150	microRNA 150	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-174196621-2	chr2	174196521	174196721	+	698.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12703.0	NR_040530	100038374.0	Mm.127249	NR_040530	ENSMUSG00000074555	Gm10714	-	predicted gene 10714	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-112722639-2	chr12	112722539	112722739	+	929.400024	f1_balb.idr|f1_c57bl6.idr	intron (NM_001024602, intron 1 of 18)	CpG	465.0	NM_001024602	217882.0	Mm.23689	NM_001024602	ENSMUSG00000072825	Cep170b	AI466840|AW555464|Kiaa0284|mKIAA0284	centrosomal protein 170B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-44265523-2	chr19	44265388	44265588	+	767.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28188.0	NM_009128	20250.0	Mm.487021	NM_009128	ENSMUSG00000025203	Scd2	Mir5114|Scd-2|mir-5114|swty	stearoyl-Coenzyme A desaturase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-66142429-4	chr2	66142269	66142469	+	955.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17576.0	NM_015736	14425.0	Mm.439760	NM_015736	ENSMUSG00000026994	Galnt3	-	polypeptide N-acetylgalactosaminyltransferase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-9547991-4	chr1	9547880	9548080	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175236)	promoter-TSS (NM_175236)	32.0	NM_001357376	76187.0	Mm.28514	NM_175236	ENSMUSG00000025911	Adhfe1	6330565B14Rik|AI043035|Adh8|HOT	alcohol dehydrogenase, iron containing, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-87439862-2	chr16	87439762	87439962	+	688.700012	f1_balb.idr|f1_c57bl6.idr	intron (NM_016924, intron 1 of 4)	B1_Mus1|SINE|Alu	730.0	NM_016924	53858.0	Mm.162406	NM_016924	ENSMUSG00000041079	Rwdd2b	ORF5	RWD domain containing 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-37244617-2	chr9	37244517	37244717	+	719.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145960, intron 1 of 18)	L2|LINE|L2	11121.0	NM_020258	56857.0	Mm.440037	NM_020258	ENSMUSG00000032122	Slc37a2	G3PP|Slc37a1|cI-2|ci2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55561998-3	chr19	55561902	55562102	+	704.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360431, intron 8 of 8)	intron (NM_001360431, intron 8 of 8)	140202.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-88417851-4	chr10	88417747	88417947	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004164, intron 5 of 20)	intron (NM_001004164, intron 5 of 20)	38435.0	NM_001004164	432486.0	Mm.335190	NM_001004164	ENSMUSG00000035311	Gnptab	EG432486|mKIAA1208	N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-148572935-4	chr2	148572842	148573042	+	947.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-99673.0	NM_019761	56488.0	Mm.34663	NM_019761	ENSMUSG00000036992	Nxt1	1110001N02Rik	NTF2-related export protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124474417-2	chr5	124474317	124474517	+	659.599976	f1_balb.idr|f1_c57bl6.idr	intron (NM_030259, intron 1 of 3)	B3|SINE|B2	3818.0	NM_030259	80291.0	Mm.425280	NM_030259	ENSMUSG00000029401	Rilpl2	-	Rab interacting lysosomal protein-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30090498-4	chr7	30090391	30090591	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_152814)	promoter-TSS (NM_152814)	19.0	NM_152814	72556.0	Mm.441512	NM_152814	ENSMUSG00000078768	Zfp566	2700043M03Rik|mszf4	zinc finger protein 566	protein-coding	7.89347036362542	7.62213015301543	7.82917968061667	7.94493683353653	7.20313262923159	7.32733426668583	7.03732781268685	7.03515170924052	-0.703972706427118	2.24172461898764e-06	0.000128485089069811
Merged-chr19-32906249-4	chr19	32906140	32906340	+	998.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	148663.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-109260575-5	chr13	109260534	109260734	+	863.67334	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011056, intron 3 of 16)	intron (NM_011056, intron 3 of 16)	-64110.0	NR_030644	100124489.0		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA	1.2589989149836	2.71310807589509	2.96982357789389	1.88502391600179	1.64405316650889	1.13442068022125	2.54840171173937	1.06974898933726	-1.39661437914169	0.209271831353034	0.698750491439807
Merged-chr12-69485823-4	chr12	69485730	69485930	+	933.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10280.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	-0.971312285390935	-1.32150654078059	-1.33147993744313	-1.33967238241123	-1.35121754901196	-1.3193452641188	-1.17229511841967	-1.33820593867886	-0.987986103315274	0.773449200295012	1
Merged-chr13-81703301-3	chr13	81703189	81703389	+	738.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081176, intron 1 of 7)	intron (NM_001081176, intron 1 of 7)	7724.0	NM_001081176	67486.0	Mm.279781	NM_001081176	ENSMUSG00000035834	Polr3g	2310047G20Rik|AV275904|RPC32|RPC7	polymerase (RNA) III (DNA directed) polypeptide G	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-47247020-3	chr4	47246936	47247136	+	847.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009928, intron 3 of 39)	intron (NM_009928, intron 3 of 39)	39024.0	NM_009928	12819.0	Mm.233547	NM_009928	ENSMUSG00000028339	Col15a1	-	collagen, type XV, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-56761940-2	chr19	56761840	56762040	+	736.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1H2|LTR|ERVL-MaLR	39568.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-185362925-4	chr1	185362776	185362976	+	987.6785890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029735)	promoter-TSS (NM_029735)	-168.0	NM_029735	107508.0	Mm.154511	NM_029735	ENSMUSG00000026615	Eprs	2410081F06Rik|3010002K18Rik|C79379|Qprs	glutamyl-prolyl-tRNA synthetase	protein-coding	5.81150027109345	6.47301004978712	6.67130275955846	6.1318781416354	6.21311340471191	6.42252278593029	6.18211377168755	5.69068612779595	-0.16808733990828	0.501667034328795	0.938443375140454
Merged-chr19-40345844-2	chr19	40345755	40345955	+	766.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001034963, intron 11 of 22)	intron (NM_001034963, intron 11 of 22)	56455.0	NM_001034964	20411.0	Mm.210815	NM_009166	ENSMUSG00000025006	Sorbs1	2310065E01Rik|9530001P15Rik|CAP|SH3P12|Sh3d5|mKIAA1296	sorbin and SH3 domain containing 1	protein-coding	-0.953721354153451	-1.41025554057125	-1.42001056191158	-1.42802362688808	-1.44024889148474	-1.40814158675276	-1.41780223890411	-1.42658929208844	-2.11310844444413	0.543369238581748	1
Merged-chr15-78327411-2	chr15	78327311	78327511	+	573.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358854, intron 2 of 14)	B2_Mm1a|SINE|B2	1421.0	NM_007780	12983.0	Mm.235324	NM_007780	ENSMUSG00000071713	Csf2rb	AI848964|AIC2B|Bc|CDw131|Csf2rb1|Csfgmrb|Il3r|Il3rb|Il3rb1|Il5rb	colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115708661-4	chr11	115708555	115708755	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008163)	promoter-TSS (NM_008163)	-58.0	NM_008163	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89101020-2	chr3	89100920	89101120	+	566.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001253751, exon 2 of 11)	exon (NM_001253751, exon 2 of 11)	947.0	NM_134469	110196.0	Mm.39472	NM_134469	ENSMUSG00000059743	Fdps	6030492I17Rik|AI256750|Fdpsl1|mKIAA1293	farnesyl diphosphate synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-34022027-2	chr10	34021927	34022127	+	625.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17D2|LTR|ERVK	-2411.0	NM_025614	66521.0	Mm.28528	NM_025614	ENSMUSG00000019782	Rwdd1	0710001K08Rik|2610002D06Rik|2700069A07Rik|IH1	RWD domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-23224819-4	chr16	23224718	23224918	+	923.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145933)	promoter-TSS (NM_145933)	78.0	NM_145933	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-13600954-4	chr8	13600831	13601031	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 4 of 23)	intron (NM_009025, intron 4 of 23)	-38470.0	NM_001080781	66501.0	Mm.46136	NM_025601	ENSMUSG00000031452	1700029H14Rik	-	RIKEN cDNA 1700029H14 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-55976122-2	chr16	55976022	55976222	+	786.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173026, intron 1 of 10)	intron (NM_173026, intron 1 of 10)	-1505.0	NR_027965	66391.0	Mm.472722	NM_133677	ENSMUSG00000102101	Zbtb11os1	2310061J03Rik	zinc finger and BTB domain containing 11, opposite strand 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-85353067-3	chr10	85352952	85353152	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Zaphod|DNA|hAT-Tip100	-33762.0	NM_028709	74007.0	Mm.36544	NM_028709	ENSMUSG00000020042	Btbd11	6330404E16Rik	BTB (POZ) domain containing 11	protein-coding	3.30362195857563	2.89872012428503	3.11711710573742	2.40812736453588	2.40506226697344	1.40624771252314	1.64300825091865	1.81123567750075	-2.33078845041905	0.00687624103898839	0.0842421443013438
Merged-chr13-52283630-4	chr13	52283494	52283694	+	822.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	186853.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-36028428-1	chr12	36028328	36028528	+	789.0	f1_balb.idr	intron (NM_025359, intron 1 of 5)	MLT1D|LTR|ERVL-MaLR	14050.0	NM_025359	66109.0	Mm.254663	NM_025359	ENSMUSG00000020577	Tspan13	1100001I23Rik|NET-6|Tm4sf13	tetraspanin 13	protein-coding	2.03679058829086	3.09268293766175	1.52014876397105	2.90208856085341	3.2127343730604	2.49376361826876	3.18669831593056	3.48987215046814	1.10182167523658	0.156002355914123	0.611405574779286
Merged-chr19-40612351-4	chr19	40612250	40612450	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026260)	promoter-TSS (NM_026260)	-16.0	NM_001304721	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70798653-2	chr8	70798553	70798753	+	600.25	f1_balb.idr|f1_c57bl6.idr	TTS (NR_106099)	TTS (NR_106099)	518.0	NR_106099	102466823.0		NR_106099	ENSMUSG00000099031	Mir7240	Gm27487|mmu-mir-7240	microRNA 7240	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-103697889-6	chr11	103697723	103697923	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019650)	promoter-TSS (NM_019650)	99.0	NR_102396	399609.0	Mm.351922	NR_102388		C130046K22Rik	-	RIKEN cDNA C130046K22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-62210813-4	chr15	62210705	62210905	+	846.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132746, intron 3 of 6)	intron (NR_132746, intron 3 of 6)	8646.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-4151806-2	chr7	4151706	4151906	+	852.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021454, intron 2 of 2)	intron (NM_021454, intron 2 of 2)	-1934.0	NM_175529	243813.0	Mm.347643	NM_175529	ENSMUSG00000043432	Leng9	9530024C23Rik|F630035L11Rik	leukocyte receptor cluster (LRC) member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-11254232-4	chr4	11254137	11254337	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178112)	promoter-TSS (NM_178112)	22.0	NM_178112	72656.0	Mm.246713	NM_178112	ENSMUSG00000040738	Ints8	2810013E07Rik|AV063769|D130008D20Rik	integrator complex subunit 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-112274829-2	chr5	112274729	112274929	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1862.0	NM_001326590	22022.0	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-37257753-4	chr9	37257652	37257852	+	939.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2014.0	NM_001145960	56857.0	Mm.440037	NM_020258	ENSMUSG00000032122	Slc37a2	G3PP|Slc37a1|cI-2|ci2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-114442443-3	chr8	114442318	114442518	+	813.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019573, intron 1 of 8)	intron (NM_019573, intron 1 of 8)	2766.0	NM_019573	80707.0	Mm.440420	NM_019573	ENSMUSG00000004637	Wwox	5330426P09Rik|9030416C10Rik|WOX1	WW domain-containing oxidoreductase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-110842451-2	chr12	110842351	110842551	+	1000.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_152102, exon 2 of 2)	non-coding (NR_152102, exon 2 of 2)	1422.0	NR_152102	66709.0	Mm.390504	NR_152102		4921507G05Rik	-	RIKEN cDNA 4921507G05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-4159210-2	chr11	4159110	4159310	+	933.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177616, intron 1 of 12)	ORR1A3-int|LTR|ERVL-MaLR	1083.0	NM_177616	216516.0	Mm.386854	NM_177616	ENSMUSG00000051427	Ccdc157	4930562D19Rik|mKIAA1656	coiled-coil domain containing 157	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44529360-2	chr7	44529260	44529460	+	562.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_019866, intron 4 of 5)	intron (NM_019866, intron 4 of 5)	2711.0	NM_019866	272382.0	Mm.8012	NM_019866	ENSMUSG00000008193	Spib	Spi-B	Spi-B transcription factor (Spi-1/PU.1 related)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-61070699-2	chr18	61070599	61070799	+	562.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008809, intron 10 of 22)	intron (NM_008809, intron 10 of 22)	25549.0	NM_008809	18596.0	Mm.4146	NM_008809	ENSMUSG00000024620	Pdgfrb	AI528809|CD140b|PDGFR-1|Pdgfr	platelet derived growth factor receptor, beta polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-114770203-1	chr5	114770103	114770303	+	1000.0	f1_balb.idr	intron (NM_001077359, intron 1 of 18)	intron (NM_001077359, intron 1 of 18)	3288.0	NM_019834	26431.0	Mm.195632	NM_019834	ENSMUSG00000041890	Git2	1500036H07Rik|5830420E16Rik|6430510B20Rik|9630056M03Rik|B230104M05Rik|CAT2|mKIAA0148	G protein-coupled receptor kinase-interactor 2	protein-coding	-1.01707008444741	-0.993492043802862	-1.00764648088546	-1.01185324898415	-1.01628940292637	-0.0453400029982381	-1.00444222658639	-1.01130848519189	3.32945445846488	0.287936268400993	1
Merged-chr1-156450720-4	chr1	156450582	156450782	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009230, intron 3 of 15)	intron (NM_009230, intron 3 of 15)	23646.0	NM_009230	20652.0	Mm.28099	NM_009230	ENSMUSG00000026600	Soat1	8430426K15Rik|ACAT-1|AW550831|Acact|ald|hid	sterol O-acyltransferase 1	protein-coding	3.28976877584727	2.85232344279593	3.48780660404611	3.55979549576827	4.39366428469088	4.11884914336018	4.42691694081663	4.47444970134355	1.45940599923551	0.00177910467886579	0.0306397578043517
Merged-chr18-38845754-2	chr18	38845654	38845854	+	974.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_010197, intron 3 of 3)	intron (NM_010197, intron 3 of 3)	-46702.0	NM_001033789	545253.0	Mm.244585	NM_001033789	ENSMUSG00000036452	Gm5820	EG545253	predicted gene 5820	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-22165021-4	chr9	22164902	22165102	+	941.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	8156.0	NM_001082532	66268.0	Mm.28924	NM_025457	ENSMUSG00000010607	Pigyl	1810008A14Rik|PIG-Y|Pigy	phosphatidylinositol glycan anchor biosynthesis, class Y-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-142387131-4	chr6	142387028	142387228	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001204907)	promoter-TSS (NM_001204907)	-41.0	NM_023042	19691.0	Mm.27407	NM_023042	ENSMUSG00000030243	Recql	RecQ1	RecQ protein-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-4493422-4	chr8	4493318	4493518	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026058)	promoter-TSS (NM_026058)	13.0	NM_026058	67260.0	Mm.35511	NM_026058	ENSMUSG00000008206	Cers4	2900019C14Rik|Lass4|Trh1	ceramide synthase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-38628952-2	chr18	38628852	38629052	+	707.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27684.0	NM_011898	24066.0	Mm.42038	NM_011898	ENSMUSG00000024427	Spry4	A030006O18Rik|sprouty4	sprouty RTK signaling antagonist 4	protein-coding	-0.547557879628668	-0.539721786515821	-0.54232115221098	-0.28474319259367	-0.547077291652625	-0.539131541230991	-0.256567844190045	-0.177188578182756	1.34067940643264	0.619739003717391	1
Merged-chr4-89458786-4	chr4	89458667	89458867	+	958.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132431, intron 7 of 9)	intron (NR_132431, intron 7 of 9)	-147735.0	NM_007670	12579.0	Mm.423094	NM_007670	ENSMUSG00000073802	Cdkn2b	AV083695|INK4b|MTS2|p15|p15(INK4b)|p15INK4b	cyclin dependent kinase inhibitor 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-31942461-1	chr11	31942361	31942561	+	637.0	f0_balb.idr	Intergenic	Intergenic	-23172.0	NM_026262	67592.0	Mm.78654	NM_026262	ENSMUSG00000020299	4930524B15Rik	-	RIKEN cDNA 4930524B15 gene	protein-coding	1.42992276237859	0.883714489232895	0.329458516186368	0.508862921718177	0.621450862525379	0.340398338937224	0.331438324401411	0.512414251937403	-2.36145608564727	0.182647666659185	1
Merged-chr7-46712342-2	chr7	46712179	46712379	+	578.5	f0_balb.idr|f1_c57bl6.idr	intron (NM_011315, intron 3 of 3)	intron (NM_011315, intron 3 of 3)	-1628.0	NM_030233	78935.0	Mm.289866	NM_030233	ENSMUSG00000006763	Saal1	5031425D22Rik|SPACIA1	serum amyloid A-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-98970866-2	chr7	98970766	98970966	+	707.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 12 of 14)	intron (NM_178635, intron 12 of 14)	132021.0	NM_001285795	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-5511551-4	chr11	5511452	5511652	+	997.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9089.0	NM_013842	22433.0	Mm.469937	NM_013842	ENSMUSG00000020484	Xbp1	D11Ertd39e|TREB-5|TREB5|XBP-1	X-box binding protein 1	protein-coding	4.75852392910911	5.62701968826767	4.88345582381969	5.28103219686881	5.08278763291333	5.19685563032373	5.58537493751401	5.61376189187113	0.251106748193431	0.424899532544677	0.901293602726532
Merged-chr11-101301557-2	chr11	101301457	101301657	+	898.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359821, intron 2 of 3)	intron (NM_001359821, intron 2 of 3)	729.0	NM_019584	56208.0	Mm.178947	NM_019584	ENSMUSG00000035086	Becn1	Atg6	beclin 1, autophagy related	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-119378570-2	chr13	119378470	119378670	+	721.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008710, intron 7 of 16)	intron (NM_008710, intron 7 of 16)	30441.0	NM_008710	18115.0	Mm.132584	NM_008710	ENSMUSG00000116207	Nnt	4930423F13Rik|AI323702|BB168308	nicotinamide nucleotide transhydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-79864380-4	chr12	79864283	79864483	+	991.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60350.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-115900416-4	chr13	115900243	115900443	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	409345.0	NM_021459	16392.0	Mm.42242	NM_021459	ENSMUSG00000042258	Isl1	-	ISL1 transcription factor, LIM/homeodomain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-91693664-4	chr6	91693566	91693766	+	942.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009320, intron 1 of 14)	intron (NM_009320, intron 1 of 14)	9599.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-56432045-4	chr18	56431966	56432166	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026240)	promoter-TSS (NM_026240)	-66.0	NM_026240	107022.0	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|Gramd2b|NS3TP2	GRAM domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-85249191-1	chr1	85249091	85249291	+	738.5	f1_balb.idr	intron (NM_175219, intron 6 of 7)	intron (NM_175219, intron 6 of 7)	21375.0	NM_175219	620078.0	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik	RIKEN cDNA C130026I21 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-9907256-4	chr1	9907162	9907362	+	965.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1376.0	NM_177722	240697.0	Mm.259800	NM_177722	ENSMUSG00000046101	Mcmdc2	6030422M02Rik	minichromosome maintenance domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-101908605-2	chr13	101908505	101908705	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-140388.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-38285059-2	chr15	38284959	38285159	+	943.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14841.0	NM_001357677	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-29853261-4	chr5	29853158	29853358	+	987.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-117322.0	NR_028426	332993.0	Mm.473746	NR_028426		Gm5129	EG332993	predicted gene 5129	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19619418-7	chr7	19619338	19619538	+	855.5714109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290457, intron 3 of 10)	intron (NM_001290457, intron 3 of 10)	10000.0	NM_001290457	19698.0	Mm.1741	NM_009046	ENSMUSG00000002983	Relb	shep	avian reticuloendotheliosis viral (v-rel) oncogene related B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-38603621-3	chr16	38603499	38603699	+	789.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_020260, exon 12 of 12)	exon (NM_020260, exon 12 of 12)	40785.0	NM_026407	67846.0	Mm.310476	NM_026407	ENSMUSG00000002845	Tmem39a	2610033C09Rik	transmembrane protein 39a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-9955224-3	chr15	9955152	9955352	+	710.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-206384.0	NM_001305044	320277.0	Mm.127822	NM_177123	ENSMUSG00000072663	Spef2	C230086A09Rik	sperm flagellar 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44248342-2	chr7	44248242	44248442	+	720.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025880, intron 2 of 5)	intron (NM_025880, intron 2 of 5)	-1513.0	NR_028534	100217434.0		NR_028534	ENSMUSG00000096296	Snord88c	MBII-180	small nucleolar RNA, C/D box 88C	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-119898489-4	chr2	119898390	119898590	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013720, intron 1 of 23)	intron (NM_013720, intron 1 of 23)	1262.0	NM_013720	29808.0	Mm.87532	NM_013720	ENSMUSG00000033943	Mga	AV312082|C130042M01Rik|C80739|D030062C11Rik|Mad5	MAX gene associated	protein-coding	2.30931472841168	2.46638557291413	3.81847003702914	2.70291200086659	2.45951854779536	1.533464688998	3.98607536032161	2.71798193397677	0.011705200910994	0.98887568128119	0.998431161219273
Merged-chr11-20732496-3	chr11	20732396	20732596	+	975.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181411, intron 1 of 8)	L1MD2|LINE|L1	9060.0	NM_001290545	216549.0	Mm.356580	NM_181411	ENSMUSG00000049659	Aftph	-	aftiphilin	protein-coding	2.8057672708982	3.47201073837867	3.16209941915506	2.96358371145199	3.71775468057273	3.497129905601	3.62750488450737	3.94416822580784	0.93959032975799	0.08488062065482	0.44758175503217
Merged-chr9-85389190-4	chr9	85389099	85389299	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62049.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-123369563-2	chr7	123369463	123369663	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001316713, intron 1 of 19)	CpG	352.0	NM_001122643	70497.0	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-78037705-3	chr2	78037596	78037796	+	807.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13481.0	NR_108098	78158.0	Mm.78473	NR_108098	ENSMUSG00000085431	4930440I19Rik	-	RIKEN cDNA 4930440I19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-57798679-3	chr14	57798578	57798778	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_037238)	TTS (NR_037238)	254.0	NR_037238	100526476.0		NR_037238	ENSMUSG00000092784	Mir3077	mir-3077|mmu-mir-3077	microRNA 3077	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-111086335-3	chr9	111086238	111086438	+	784.472229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28820.0	NM_001302376	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-99197128-2	chr13	99197028	99197228	+	979.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001004149, intron 1 of 4)	intron (NM_001004149, intron 1 of 4)	12305.0	NM_001004149	238803.0	Mm.343207	NM_001004149	ENSMUSG00000050919	Zfp366	DC-SCRIPT|Znf366	zinc finger protein 366	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-37419198-2	chr2	37419098	37419298	+	715.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001100591, intron 2 of 21)	intron (NM_001100591, intron 2 of 21)	3705.0	NM_001100591	319817.0	Mm.288785	NM_001100591	ENSMUSG00000075376	Rc3h2	2900024N03Rik|9430019J22Rik|D930043C02Rik|Mnab|Rnf164	ring finger and CCCH-type zinc finger domains 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-143975005-1	chr2	143974905	143975105	+	603.0	f1_c57bl6.idr	intron (NM_024281, intron 2 of 23)	B2_Mm2|SINE|B2	36258.0	NM_133626	81910.0	Mm.13705	NM_024281	ENSMUSG00000027422	Rrbp1	1700087N07Rik|5730465C04Rik|ES/130|mKIAA1398|mRRp0|mRRp1.8|mRRp10|mRRp15a|mRRp15b|mRRp16.8|mRRp2|mRRp41|mRRp47|mRRp5.4|p180	ribosome binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-75153931-4	chr8	75153694	75153894	+	751.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44285.0	NM_008566	17218.0	Mm.5048	NM_008566	ENSMUSG00000005410	Mcm5	AA617332|AI324988|AL033333|Cdc46|Mcmd5|P1-CDC46	minichromosome maintenance complex component 5	protein-coding	0.020682922580369	1.52787147803051	0.0476514572197979	0.0377304409674494	0.0232670226013771	1.16383793371567	0.0504424955576576	0.0394817277762053	-0.70332352522232	0.831090057201841	0.998431161219273
Merged-chr7-80391640-1	chr7	80391540	80391740	+	846.0	f1_balb.idr	intron (NM_011046, intron 14 of 15)	intron (NM_011046, intron 14 of 15)	-3694.0	NM_010194	14159.0	Mm.48757	NM_010194	ENSMUSG00000053158	Fes	AI586313|BB137047|FPS|c-fes	feline sarcoma oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-21515090-4	chr5	21514983	21515183	+	802.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199632, intron 17 of 20)	B1F|SINE|Alu	-28444.0	NM_028977	74511.0	Mm.439963	NM_028977	ENSMUSG00000039883	Lrrc17	37kDa|4833425M04Rik|6130400C22Rik|P37nb	leucine rich repeat containing 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-52080174-4	chr11	52080064	52080264	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166654, intron 13 of 13)	intron (NM_001166654, intron 13 of 13)	-18660.0	NM_019411	19052.0	Mm.260288	NM_019411	ENSMUSG00000020349	Ppp2ca	PP2A|R75353	protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97404768-2	chr11	97404668	97404868	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42217.0	NM_138657	192157.0	Mm.34339	NM_138657	ENSMUSG00000038485	Socs7	2310063P06Rik|C85125|Nap4	suppressor of cytokine signaling 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-78537019-2	chr11	78536919	78537119	+	666.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159392)	promoter-TSS (NM_001159392)	658.0	NM_018854	55978.0	Mm.358671	NM_018854	ENSMUSG00000001105	Ift20	0610009H04Rik|AU015496|mIFT20	intraflagellar transport 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25107268-4	chr7	25107164	25107364	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163556, intron 5 of 13)	L1MA6|LINE|L1	-10089.0	NR_105855	102465968.0		NR_105855	ENSMUSG00000098441	Mir6537	Gm27808|mmu-mir-6537	microRNA 6537	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-120891265-4	chr5	120891164	120891364	+	845.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3651.0	NR_126529	23960.0	Mm.389688	NM_011852	ENSMUSG00000066861	Oas1g	AI449562|L2|Mmu-L|Mmu-L2|Oas1b|Oias-1|Oias1	2'-5' oligoadenylate synthetase 1G	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-9566395-1	chr11	9566295	9566495	+	542.0	f1_balb.idr	intron (NM_178259, intron 49 of 61)	intron (NM_178259, intron 49 of 61)	374453.0	NM_178259	268379.0	Mm.39270	NM_178259	ENSMUSG00000004668	Abca13	9830132L24|A930002G16Rik|AI956815	ATP-binding cassette, sub-family A (ABC1), member 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-90513250-2	chr3	90513150	90513350	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011309, intron 1 of 2)	intron (NM_011309, intron 1 of 2)	1080.0	NM_011309	20193.0	Mm.24662	NM_011309	ENSMUSG00000044080	S100a1	AI266795|S100|S100a	S100 calcium binding protein A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-97681987-4	chr3	97681890	97682090	+	936.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8572.0	NR_106084	102466229.0		NR_106084	ENSMUSG00000098381	Mir7225	Gm27499|mmu-mir-7225	microRNA 7225	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-97571207-3	chr1	97571102	97571302	+	663.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	90474.0	NM_001355074	52392.0	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-84109888-4	chr10	84109775	84109975	+	949.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-9178.0	NR_152790	102637349.0	Mm.402869	NR_152790	ENSMUSG00000111049	Gm34184	-	predicted gene, 34184	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120495092-3	chr8	120495031	120495231	+	934.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198671, intron 1 of 15)	intron (NM_198671, intron 1 of 15)	6265.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70744442-4	chr8	70744353	70744553	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201607, intron 3 of 16)	CpG	-10226.0	NM_001328047	19339.0	Mm.5083	NM_009001	ENSMUSG00000031840	Rab3a	-	RAB3A, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-31104473-4	chr3	31104552	31104752	+	807.19165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039090, intron 2 of 6)	B1_Mus1|SINE|Alu	9594.0	NM_001271772	20482.0	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-119261951-4	chr9	119261845	119262045	+	906.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359582, intron 9 of 18)	intron (NM_001359582, intron 9 of 18)	-30253.0	NR_033303	109280.0	Mm.261557	NM_175420	ENSMUSG00000092212	Slc22a13b-ps	9330176C04Rik|Slc22a13b	solute carrier family 22 (organic cation transporter), member 13b, pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120669053-4	chr8	120668939	120669139	+	971.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010926)	promoter-TSS (NM_010926)	719.0	NM_001293559	12857.0	Mm.386758	NM_009941	ENSMUSG00000031818	Cox4i1	AL024441|COX|COX IV-1|COXIV|Cox4|Cox4a|IV-1	cytochrome c oxidase subunit 4I1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-25750878-2	chr15	25750778	25750978	+	669.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019472, intron 19 of 40)	intron (NM_019472, intron 19 of 40)	-2328.0	NM_001353142	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-57104576-3	chr17	57104474	57104674	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009404)	promoter-TSS (NM_009404)	-811.0	NM_009404	21950.0	Mm.41171	NM_009404	ENSMUSG00000035678	Tnfsf9	4-1BB-L|4-1BBL|AI848817|Cd137l|Ly63l	tumor necrosis factor (ligand) superfamily, member 9	protein-coding	-1.18843546917626	-0.672880934833519	-1.0000600259471	-1.18308460022907	-1.18795000374374	-1.1605532696126	-1.17150120785794	-1.18145913969456	-2.61982285023827	0.417764462822768	1
Merged-chr5-29378446-4	chr5	29378326	29378526	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020295)	promoter-TSS (NM_020295)	-36.0	NM_020295	56873.0	Mm.41572	NM_020295	ENSMUSG00000010721	Lmbr1	1110048D14Rik|AU017641	limb region 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-76605838-4	chr11	76605754	76605954	+	938.462524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-28115.0	NM_198894	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	3.94333649507209	3.61742744654599	2.50402223778284	3.47910120445267	4.22007608376092	2.96196511361869	4.01599714962244	3.64652559962215	0.455159794234012	0.429141374674816	0.903416445927044
Merged-chr9-102615309-3	chr9	102615213	102615413	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001301689, exon 6 of 15)	exon (NM_001301689, exon 6 of 15)	10811.0	NM_001301689	28135.0	Mm.38910	NM_001081122	ENSMUSG00000032534	Cep63	4921501M07|AL450317.13gm1|AW107703|CD20R|D9Mgc41|D9Mgc48e|ET2	centrosomal protein 63	protein-coding	3.74516805274264	3.5299387793579	3.69445912404477	3.09685280102143	1.05029036886783	1.23712572755895	1.18129292446817	1.13016204298329	-6.68353626054027	1.08962660219799e-08	1.30294646833585e-06
Merged-chr8-15076866-2	chr8	15076766	15076966	+	789.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008664, intron 6 of 36)	intron (NM_008664, intron 6 of 36)	19213.0	NM_008664	17930.0	Mm.272115	NM_008664	ENSMUSG00000031461	Myom2	AW146149	myomesin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-88528733-1	chr11	88528633	88528833	+	682.0	f1_balb.idr	intron (NM_054043, intron 6 of 13)	intron (NM_054043, intron 6 of 13)	-90518.0	NR_131025	68397.0	Mm.426889	NR_131025		0610039H22Rik	-	RIKEN cDNA 0610039H22 gene	ncRNA	-0.282105737176041	-0.0571232952347546	-0.357657261677475	-0.372360551843977	-0.52849090730009	-0.518585529568208	-0.521829447881366	-0.524581941127896	-3.25873226741957	0.178134998600892	1
Merged-chr4-89363503-1	chr4	89363403	89363603	+	718.0	f0_balb.idr	intron (NR_132431, intron 2 of 9)	intron (NR_132431, intron 2 of 9)	-52471.0	NM_007670	12579.0	Mm.423094	NM_007670	ENSMUSG00000073802	Cdkn2b	AV083695|INK4b|MTS2|p15|p15(INK4b)|p15INK4b	cyclin dependent kinase inhibitor 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-78588055-5	chr9	78587899	78588099	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001276452)	promoter-TSS (NM_001276452)	46.0	NM_172773	235504.0	Mm.46932	NM_172773	ENSMUSG00000049624	Slc17a5	4631416G20Rik|4732491M05|AST|ISSD|NSD|SD|SIALIN|SIASD|SLD	solute carrier family 17 (anion/sugar transporter), member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-172378428-5	chr2	172378292	172378492	+	737.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024199, intron 5 of 5)	intron (NM_024199, intron 5 of 5)	7389.0	NM_024199	67337.0	Mm.26944	NM_024199	ENSMUSG00000027498	Cstf1	1700057K18Rik|AI788832	cleavage stimulation factor, 3' pre-RNA, subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83613451-4	chr6	83613362	83613562	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40958.0	NM_001362080	70527.0	Mm.32801	NM_024239	ENSMUSG00000006906	Stambp	5330424L14Rik|5730422L11Rik|AW107289|Amsh|mKIAA4198	STAM binding protein	protein-coding	3.93070789159287	3.99807152887068	3.21588772702048	3.75899025980716	4.24505667161958	4.40928417582377	3.74064373178998	4.63669704836912	0.737119955205375	0.109028475502927	0.517453975112387
Merged-chr17-12256755-2	chr17	12256655	12256855	+	638.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357722, intron 8 of 25)	intron (NM_001357722, intron 8 of 25)	61905.0	NM_011948	26407.0	Mm.28587	NM_011948	ENSMUSG00000014426	Map3k4	D17Rp17|D17Rp17e|MAPKKK4|MEKK 4|MTK1|Mek4b|Mekk4|RP17|Rp17a|Tas|mKIAA0213	mitogen-activated protein kinase kinase kinase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-18211023-2	chr14	18210923	18211123	+	761.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011584, intron 6 of 7)	intron (NM_011584, intron 6 of 7)	28083.0	NM_011584	353187.0	Mm.26587	NM_011584	ENSMUSG00000021775	Nr1d2	RVR|Rev-erb	nuclear receptor subfamily 1, group D, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-9237770-4	chr9	9237668	9237868	+	869.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045754, intron 2 of 3)	intron (NR_045754, intron 2 of 3)	1245.0	NM_027823	71544.0	Mm.334955	NM_027823	ENSMUSG00000050730	Arhgap42	9030420J04Rik|BE136619	Rho GTPase activating protein 42	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-20257327-1	chr5	20257227	20257427	+	595.0	f0_balb.idr	intron (NM_001170746, intron 6 of 22)	intron (NM_001170746, intron 6 of 22)	349809.0	NM_015823	50791.0	Mm.332231	NM_015823	ENSMUSG00000040003	Magi2	AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705	membrane associated guanylate kinase, WW and PDZ domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44384268-2	chr9	44384137	44384337	+	949.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_021395, exon 9 of 26)	exon (NM_021395, exon 9 of 26)	4747.0	NM_021395	12282.0	Mm.116721	NM_021395	ENSMUSG00000032115	Hyou1	AI415631|CBP-140|Cab140|Grp170|Orp150	hypoxia up-regulated 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-74639108-4	chr13	74639017	74639217	+	995.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030711)	promoter-TSS (NM_030711)	-736.0	NM_030711	80898.0	Mm.83526	NM_030711	ENSMUSG00000021583	Erap1	A-LAP|ARTS-1|Arts1|ERAAP|PILSA|PILSAP	endoplasmic reticulum aminopeptidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-38253124-4	chr18	38253035	38253235	+	836.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024179, intron 4 of 12)	intron (NM_024179, intron 4 of 12)	-2570.0	NR_027904	73516.0	Mm.48776	NR_015475	ENSMUSG00000097080	1700086O06Rik	-	RIKEN cDNA 1700086O06 gene	ncRNA	2.11965341836808	1.66806663016967	2.16628465038588	2.64920676688355	2.44643372627285	2.93261794940122	1.36447406315768	2.89616943224009	0.745630591197469	0.416899693520895	0.897222495742637
Merged-chr1-45906816-4	chr1	45906701	45906901	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18793.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-127977202-2	chr1	127977102	127977302	+	717.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285945, intron 12 of 20)	intron (NM_001285945, intron 12 of 20)	108429.0	NM_178690	226407.0	Mm.489713	NM_178690	ENSMUSG00000036104	Rab3gap1	1700003B17Rik|4732493F09Rik|AL117896|Rab3gap|p130	RAB3 GTPase activating protein subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-88730444-2	chr13	88730344	88730544	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus4|LINE|L1	-91028.0	NM_010103	13612.0	Mm.125580	NM_010103	ENSMUSG00000034488	Edil3	Del-1|Del1|Sox2-cre|Sox2Cre|Tg(Sox2-cre)1Amc	EGF-like repeats and discoidin I-like domains 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-120787340-2	chr5	120787240	120787440	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145210, intron 5 of 5)	intron (NM_145210, intron 5 of 5)	8190.0	NM_001347450	231699.0	Mm.379383	NM_145210	ENSMUSG00000066867	Oas1e	C87484|oasl7	2'-5' oligoadenylate synthetase 1E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-69790483-4	chr2	69790397	69790597	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028521, intron 2 of 3)	intron (NM_028521, intron 2 of 3)	760.0	NM_028521	73373.0	Mm.9621	NM_028521	ENSMUSG00000027088	Phospho2	1700048E23Rik|AI661517|AU021728|AV006103|Phos2	phosphatase, orphan 2	protein-coding	4.51074872892552	5.30710011957192	4.17596716657061	4.60630276231848	4.73423518207448	5.66300019145677	4.76388443433152	4.79762652394548	0.404356315657257	0.292946752649353	0.797483392441446
Merged-chr3-88627733-4	chr3	88627637	88627837	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198913, intron 1 of 21)	intron (NM_001198913, intron 1 of 21)	6343.0	NM_001198912	16800.0	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-82908404-4	chr11	82908315	82908515	+	988.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145431)	promoter-TSS (NM_145431)	-20.0	NM_145431	217011.0	Mm.29176	NM_145431	ENSMUSG00000020692	Nle1	AL022765|BC018399|Nle|l11Jus1|l11Jus4	notchless homolog 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-73049482-2	chr11	73049382	73049582	+	726.799988	f1_balb.idr|f1_c57bl6.idr	intron (NM_025818, intron 1 of 12)	intron (NM_025818, intron 1 of 12)	1615.0	NM_025818	66874.0	Mm.41903	NM_025818	ENSMUSG00000020783	Ncbp3	1200014J11Rik|C130061O14Rik|C78393	nuclear cap binding subunit 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-7816684-3	chr10	7816598	7816798	+	640.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026141, intron 12 of 12)	intron (NM_026141, intron 12 of 12)	-15772.0	NM_172785	237256.0	Mm.140055	NM_172785	ENSMUSG00000039981	Zc3h12d	D730019B10Rik|TFL	zinc finger CCCH type containing 12D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-128615109-4	chr1	128615002	128615202	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22803.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	2.45700297515872	2.20964371459246	3.09750517597455	2.68788421656498	2.2600268026127	2.661996792107	3.04634961748009	1.70489943738441	-0.291262131987185	0.71822245517551	0.998431161219273
Merged-chr15-12205605-2	chr15	12205505	12205705	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356498, intron 1 of 15)	CpG	577.0	NM_172958	268783.0	Mm.54460	NM_172958	ENSMUSG00000039458	Mtmr12	3Pap|4932703C11|C730015A02Rik|Pip3ap|mKIAA1682	myotubularin related protein 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-12478312-4	chr7	12478232	12478432	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039951)	promoter-TSS (NM_001039951)	27.0	NM_026112	67370.0	Mm.98929	NM_026112	ENSMUSG00000030386	Zfp606	2410022M24Rik|AW494727	zinc finger protein 606	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-25869872-2	chr17	25869772	25869972	+	556.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1134.0	NM_026633	68241.0	Mm.328870	NM_026633	ENSMUSG00000025732	Mcrip2	9530058B02Rik|Fam195a	MAPK regulated corepressor interacting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97700335-4	chr11	97700093	97700293	+	850.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163307)	promoter-TSS (NM_001163307)	304.0	NM_009545	22658.0	Mm.2418	NM_009545	ENSMUSG00000018537	Pcgf2	Mel18|Rnf110|Zfp144|mel-18	polycomb group ring finger 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-34188794-2	chr7	34188694	34188894	+	588.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026549, intron 5 of 6)	B3A|SINE|B2	7876.0	NM_026549	68079.0	Mm.38173	NM_026549	ENSMUSG00000002635	Pdcd2l	6030457N17Rik	programmed cell death 2-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-45676685-2	chr16	45676585	45676785	+	633.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172455, intron 9 of 17)	L2a|LINE|L2	16973.0	NM_172455	208171.0	Mm.186306	NM_172455	ENSMUSG00000033177	Tmprss7	B230219I23Rik|Gm1748	transmembrane serine protease 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-51093642-4	chr14	51093542	51093742	+	999.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021472, intron 1 of 1)	intron (NM_021472, intron 1 of 1)	-2358.0	NM_007447	11727.0	Mm.202665	NM_007447	ENSMUSG00000072115	Ang	AI385586|Ang1|Rnase5|Rnase5a	angiogenin, ribonuclease, RNase A family, 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-84192541-2	chr17	84192441	84192641	+	680.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_183021, intron 37 of 37)	intron (NM_183021, intron 37 of 37)	-4594.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-96404781-2	chr9	96404681	96404881	+	725.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40350.0	NM_001357212	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-92034462-3	chr1	92034378	92034578	+	914.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207225, intron 3 of 26)	intron (NM_207225, intron 3 of 26)	145863.0	NM_207225	208727.0	Mm.318567	NM_207225	ENSMUSG00000026313	Hdac4	4932408F19Rik|HD4	histone deacetylase 4	protein-coding	5.74451299865819	6.13277571989769	5.22011641645524	5.58045134491969	2.1986867130881	1.79556122944844	1.69663121788478	3.38265162965082	-4.41258070136536	1.78567317171499e-06	0.000106061914426913
Merged-chr8-83720607-2	chr8	83720507	83720707	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_197982, exon 4 of 11)	exon (NM_197982, exon 4 of 11)	3377.0	NR_106188	102465897.0		NR_106188	ENSMUSG00000098465	Mir1668	Gm27590|mmu-mir-1668	microRNA 1668	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71242929-2	chr17	71242829	71243029	+	571.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357791, intron 14 of 19)	MER5A|DNA|hAT-Charlie	38275.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-67360057-3	chr7	67359974	67360174	+	771.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357324, intron 1 of 11)	L1MC4|LINE|L1	12784.0	NM_001291192	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-62328966-1	chr1	62328866	62329066	+	662.333313	f0_balb.idr	intron (NM_001081050, intron 16 of 22)	intron (NM_001081050, intron 16 of 22)	-192857.0	NR_151537	105243940.0		NR_151537		Pard3bos2	Gm12747	par-3 family cell polarity regulator beta, opposite strand 2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-13754564-4	chr16	13754442	13754642	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357954)	promoter-TSS (NM_001357954)	-22.0	NM_001357954	432999.0	Mm.60430	NM_001357954		A930007A09Rik	-	RIKEN cDNA A930007A09 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-58942994-4	chr19	58942891	58943091	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178689)	promoter-TSS (NM_178689)	-434.0	NM_178689	226265.0	Mm.103154	NM_178689	ENSMUSG00000048029	Eno4	6430537H07Rik	enolase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-78465063-4	chr10	78464988	78465188	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172134)	promoter-TSS (NM_172134)	-140.0	NM_172134	216134.0	Mm.206159	NM_172134	ENSMUSG00000032788	Pdxk	2310036D04Rik|AA119688|C77999	pyridoxal (pyridoxine, vitamin B6) kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-125065658-4	chr4	125065554	125065754	+	934.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175223)	promoter-TSS (NM_175223)	3.0	NM_175223	75563.0	Mm.50304	NM_175223	ENSMUSG00000042707	Dnali1	1700023A09Rik|AW049135	dynein, axonemal, light intermediate polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-8736168-4	chr16	8736056	8736256	+	966.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003918, intron 1 of 30)	intron (NM_001003918, intron 1 of 30)	2186.0	NM_001003918	252870.0	Mm.295330	NM_001003918	ENSMUSG00000022710	Usp7	2210010O09Rik|AA409944|AA617399|AU019296|AW548146|C80752|Hausp	ubiquitin specific peptidase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-92038131-4	chr16	92038022	92038222	+	958.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20200.0	NM_017391	53881.0	Mm.217354	NM_017391	ENSMUSG00000089774	Slc5a3	AA623876|BF642829|Smit1	solute carrier family 5 (inositol transporters), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-45520720-2	chr9	45520620	45520820	+	950.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081270, intron 3 of 32)	intron (NM_001081270, intron 3 of 32)	-89488.0	NR_040732	74602.0	Mm.394117	NR_040732	ENSMUSG00000097074	4833428L15Rik	-	RIKEN cDNA 4833428L15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-12772690-3	chr16	12772602	12772802	+	652.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38688.0	NR_040507	75493.0	Mm.396146	NR_040507	ENSMUSG00000101565	1700003L19Rik	-	RIKEN cDNA 1700003L19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-84727666-1	chr2	84727566	84727766	+	1000.0	f1_balb.idr	promoter-TSS (NM_133840)	promoter-TSS (NM_133840)	-398.0	NM_133840	98985.0	Mm.21583	NM_133840	ENSMUSG00000027079	Clp1	AI462438|Heab	CLP1, cleavage and polyadenylation factor I subunit	protein-coding	4.17797513490585	3.13033880363285	4.79120242908748	3.23917752817027	2.78017182634155	2.05380735452819	2.91262563629751	3.72149019488978	-1.49856617323887	0.0215409700044261	0.188042229480149
Merged-chr8-41015469-4	chr8	41015398	41015598	+	756.69165	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005863, intron 6 of 13)	intron (NM_001005863, intron 6 of 13)	-1970.0	NR_015457	78849.0	Mm.440930	NR_015457	ENSMUSG00000084960	B430010I23Rik	-	RIKEN cDNA B430010I23 gene	ncRNA	0.823883334575713	0.936211535700604	1.03105935901026	0.561454676843292	0.831098855794802	1.21002273050581	1.04109233153291	0.562600007513313	0.450284265948963	0.768209637970618	1
Merged-chr2-30594971-4	chr2	30594864	30595064	+	974.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030137)	promoter-TSS (NM_030137)	-80.0	NM_030137	78617.0	Mm.40413	NM_030137	ENSMUSG00000047363	Cstad	9530039B02Rik	CSA-conditional, T cell activation-dependent protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-29392577-1	chr17	29392477	29392677	+	589.0	f1_c57bl6.idr	Intergenic	ORR1A1|LTR|ERVL-MaLR	31663.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-83563566-4	chr15	83563472	83563672	+	889.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009775)	promoter-TSS (NM_009775)	-1.0	NM_009775	12257.0	Mm.1508	NM_009775	ENSMUSG00000041736	Tspo	Bzrp|IBP|PBR|Tspo1	translocator protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-149208529-1	chr4	149208429	149208629	+	550.0	f1_balb.idr	intron (NM_207682, intron 30 of 46)	intron (NM_207682, intron 30 of 46)	-41824.0	NM_001081274	110208.0	Mm.252080	NM_025801	ENSMUSG00000028961	Pgd	0610042A05Rik|AU019875|C78335	phosphogluconate dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-165461099-4	chr1	165461021	165461221	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027430)	promoter-TSS (NM_027430)	-87.0	NM_027430	70456.0	Mm.195625	NM_027430	ENSMUSG00000026568	Mpc2	0610006C01Rik|2010002I07Rik|2610205H19Rik|AA108335|Brp44|ESTM43	mitochondrial pyruvate carrier 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-24447785-4	chr5	24447677	24447877	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022418)	promoter-TSS (NM_022418)	69.0	NM_022418	64295.0	Mm.150098	NM_022418	ENSMUSG00000028958	Tmub1	2010004O20Rik|AB030183|Hops	transmembrane and ubiquitin-like domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135878007-2	chr4	135877907	135878107	+	868.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-4161.0	NM_026383	52830.0	Mm.29159	NM_026383	ENSMUSG00000028675	Pnrc2	0610011E17Rik|D4Bwg0593e	proline-rich nuclear receptor coactivator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120783860-3	chr8	120783763	120783963	+	912.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45224.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-16212479-2	chr9	16212379	16212579	+	693.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080814, intron 2 of 24)	(CATG)n|Simple_repeat|Simple_repeat	165752.0	NM_001080814	270120.0	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT atypical cadherin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-121992773-3	chr14	121992585	121992785	+	998.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026861, intron 6 of 8)	intron (NM_026861, intron 6 of 8)	-27492.0	NM_183031	321019.0	Mm.265618	NM_183031	ENSMUSG00000051212	Gpr183	Ebi2	G protein-coupled receptor 183	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-10432324-3	chr14	10432230	10432430	+	851.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360141, intron 4 of 9)	intron (NM_001360141, intron 4 of 9)	21128.0	NM_001308286	14198.0	Mm.397619	NM_010210	ENSMUSG00000060579	Fhit	AW045638|Fra14A2	fragile histidine triad gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96244167-2	chr3	96244067	96244267	+	595.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1290.0	NM_178212	319192.0	Mm.5220	NM_178212	ENSMUSG00000063954	Hist2h2aa2	H2a-614|H2a-615	histone cluster 2, H2aa2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-17253283-4	chr12	17253235	17253435	+	880.9541630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13260.0	NM_027959	71853.0	Mm.222825	NM_027959	ENSMUSG00000020571	Pdia6	1700015E05Rik|AL023058|C77895|CaBP5|P5|Txndc7	protein disulfide isomerase associated 6	protein-coding	2.79650736708231	3.5862477793236	2.8102792209682	3.13947516677046	2.1835911413145	3.75141353163964	3.49611881301882	2.86018314892601	0.134386105801772	0.841112881981176	0.998431161219273
Merged-chr1-55239409-3	chr1	55239324	55239524	+	909.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_175439, exon 1 of 1)	3' UTR (NM_175439, exon 1 of 1)	2247.0	NM_175439	212679.0	Mm.19223	NM_175439	ENSMUSG00000046994	Mars2	C730026E21Rik|MetRS	methionine-tRNA synthetase 2 (mitochondrial)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-110427361-4	chr11	110427264	110427464	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356352, intron 1 of 11)	intron (NM_001356352, intron 1 of 11)	28262.0	NM_001356353	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-109665281-4	chr4	109665149	109665349	+	923.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_007671, exon 1 of 2)	5' UTR (NM_007671, exon 1 of 2)	123.0	NM_007671	12580.0	Mm.1912	NM_007671	ENSMUSG00000028551	Cdkn2c	C77269|INK4c|p18|p18-INK4c|p18-INK6|p18INK4c	cyclin dependent kinase inhibitor 2C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-108065786-2	chr6	108065686	108065886	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178391, intron 1 of 1)	intron (NM_178391, intron 1 of 1)	741.0	NM_178391	74729.0	Mm.56539	NM_178391	ENSMUSG00000034639	Setmar	5830404F24Rik|Etet2	SET domain without mariner transposase fusion	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-95802953-4	chr15	95802840	95803040	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 1 of 19)	intron (NM_175344, intron 1 of 19)	12097.0	NM_001253813	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-155549011-3	chr4	155548906	155549106	+	893.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160016, intron 7 of 11)	intron (NM_001160016, intron 7 of 11)	-13375.0	NM_138671	192185.0	Mm.28347	NM_138671	ENSMUSG00000029063	Nadk	4432404C02Rik|BC004012	NAD kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167351097-4	chr2	167350996	167351196	+	975.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1918.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-122852926-3	chr14	122852814	122853014	+	860.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153443, intron 22 of 24)	intron (NR_153443, intron 22 of 24)	-60116.0	NR_155287	105245866.0	Mm.390754	NM_001039531	ENSMUSG00000075463	Gm15735	4930594M22Rik|F930011C10Rik	predicted gene 15735	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-14681909-1	chr18	14681809	14682009	+	1000.0	f1_c57bl6.idr	intron (NM_009280, intron 1 of 10)	intron (NM_009280, intron 1 of 10)	1005.0	NM_001161369	268996.0	Mm.31761	NM_009280	ENSMUSG00000037013	Ss18	D130059H17|Ssxt|Syt	SS18, nBAF chromatin remodeling complex subunit	protein-coding	0.212575058231807	-0.176691003067547	-0.17995099777655	0.268311978076747	-0.185913381478875	0.133138043046427	-0.179235435442129	-0.182005840773768	-1.68963987443355	0.492483360791438	1
Merged-chr9-63556530-4	chr9	63556429	63556629	+	830.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030068, intron 5 of 21)	intron (NM_030068, intron 5 of 21)	45964.0	NM_030068	78250.0	Mm.444612	NM_030068	ENSMUSG00000037801	Iqch	4921504K03Rik	IQ motif containing H	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-76380373-4	chr16	76380267	76380467	+	896.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F1|LTR|ERVL-MaLR	-6540.0	NM_001358238	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-20792224-3	chr5	20792067	20792267	+	662.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172992, intron 8 of 17)	RLTR17|LTR|ERVK	89957.0	NM_172992	68770.0	Mm.86410	NM_172992	ENSMUSG00000039987	Phtf2	1110054G21Rik|9530062N20Rik|AI447096|C77923	putative homeodomain transcription factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27652385-2	chr17	27652285	27652485	+	946.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-3206.0	NM_011861	23969.0	Mm.4926	NM_011861	ENSMUSG00000040276	Pacsin1	A830061D09Rik|H74|mKIAA1379|syndapin	protein kinase C and casein kinase substrate in neurons 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-8601773-2	chr11	8601673	8601873	+	876.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 2 of 30)	intron (NM_001083587, intron 2 of 30)	62762.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4879317-4	chr16	4879210	4879410	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145359, intron 1 of 2)	CpG	541.0	NM_145359	207740.0	Mm.268895	NM_145359	ENSMUSG00000039568	Ubald1	1500031H01Rik|BC013706|Fam100a	UBA-like domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-44086775-3	chr14	44086676	44086876	+	891.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15878.0	NM_007895	13587.0	Mm.327386	NM_007895	ENSMUSG00000072596	Ear2	EAR-13|EAR-2|ECP|ECP 2|Raf3|Rnase2	eosinophil-associated, ribonuclease A family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70844228-2	chr11	70844128	70844328	+	877.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291143)	promoter-TSS (NM_001291143)	-533.0	NM_001291143	54189.0	Mm.7087	NM_019400	ENSMUSG00000020817	Rabep1	Rab5ep|rabaptin-5|rabaptin-5alpha	rabaptin, RAB GTPase binding effector protein 1	protein-coding	0.113605883176475	0.0637848362610477	0.284497354869881	0.0312222810593327	-0.111107491057439	0.0679329825575773	0.0494507493836239	-0.106934039098091	-1.6836885525318	0.409308468653172	1
Merged-chr2-26475208-4	chr2	26475119	26475319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008714, intron 15 of 33)	intron (NM_008714, intron 15 of 33)	-5100.0	NR_105962	102465602.0		NR_105962	ENSMUSG00000098548	Mir6996	Gm27531|mmu-mir-6996	microRNA 6996	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-182420896-1	chr1	182420796	182420996	+	546.0	f1_balb.idr	intron (NM_173378, intron 1 of 17)	intron (NM_173378, intron 1 of 17)	11729.0	NM_173378	209456.0	Mm.287450	NM_173378	ENSMUSG00000026510	Trp53bp2	53BP2|AI746547|ASPP2|PPP1R13A|Tp53bp2|X98550	transformation related protein 53 binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-32311230-4	chr19	32311119	32311319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 2 of 9)	intron (NM_144792, intron 2 of 9)	38097.0	NM_001168525	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-71328962-4	chr2	71328887	71329087	+	897.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172436, intron 4 of 17)	intron (NM_172436, intron 4 of 17)	38567.0	NM_172436	78830.0	Mm.30928	NM_172436	ENSMUSG00000027010	Slc25a12	2610002D09Rik|AI839531|B230107K20Rik|BB129864	solute carrier family 25 (mitochondrial carrier, Aralar), member 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-88281556-2	chr1	88281456	88281656	+	656.416626	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-3977.0	NM_198652	381280.0	Mm.384762	NM_198652	ENSMUSG00000044783	Hjurp	6430706D22Rik|A730008H23Rik|C330011F01Rik|Gm975|Mfleg1	Holliday junction recognition protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-65891805-4	chr3	65891692	65891892	+	896.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	66457.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	5.43006426034026	5.5343444785355	4.45626103155795	5.1894861170624	5.08051873865312	5.31211712461686	3.93000518091345	5.32798434173706	-0.230087296639196	0.540774529510018	0.954866069207078
Merged-chr1-120154411-2	chr1	120154311	120154511	+	787.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028439, intron 2 of 5)	B3|SINE|B2	33224.0	NM_001172074	73103.0	Mm.271602	NM_028439	ENSMUSG00000026388	3110009E18Rik	-	RIKEN cDNA 3110009E18 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128416419-4	chr2	128416329	128416529	+	844.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028591, intron 1 of 1)	intron (NR_028591, intron 1 of 1)	12922.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	2.28302613236085	1.2841737856802	2.03071035278958	2.720538146462	2.00697008444656	2.256869431826	1.26079069402443	2.50961001022915	-0.229350980603973	0.824479522090465	0.998431161219273
Merged-chr4-33239935-3	chr4	33239814	33240014	+	842.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8873.0	NM_001033225	108767.0	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70655955-6	chr11	70655857	70656057	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG-2177	-1219.0	NM_001136062	13808.0	Mm.251322	NM_007933	ENSMUSG00000060600	Eno3	Eno-3|MSE	enolase 3, beta muscle	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-100160799-4	chr3	100160666	100160866	+	988.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175552, intron 2 of 26)	intron (NM_175552, intron 2 of 26)	1641.0	NM_175552	269470.0	Mm.24591	NM_175552	ENSMUSG00000033285	Wdr3	AW546279|D030020G18Rik	WD repeat domain 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-12140288-4	chr4	12140186	12140386	+	941.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_028226, exon 1 of 3)	5' UTR (NM_028226, exon 1 of 3)	169.0	NM_028226	72397.0	Mm.430709	NM_028226	ENSMUSG00000046667	Rbm12b1	3000004N20Rik|Rbm12b|Rbm12ba	RNA binding motif protein 12 B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167218313-2	chr2	167218213	167218413	+	912.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008968, intron 5 of 9)	intron (NM_008968, intron 5 of 9)	22224.0	NM_008968	19223.0	Mm.2339	NM_008968	ENSMUSG00000017969	Ptgis	Cyp8|Cyp8a1|Pgis	prostaglandin I2 (prostacyclin) synthase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-53248200-4	chr9	53248109	53248309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029936)	promoter-TSS (NM_029936)	-97.0	NM_029936	77591.0	Mm.133560	NM_029936	ENSMUSG00000053289	Ddx10	4632415A01Rik|AI646054	DEAD (Asp-Glu-Ala-Asp) box polypeptide 10	protein-coding	5.61179582881015	5.37642136162832	5.7048329971439	5.57226618261566	5.79627285017232	5.14314756053706	5.06867673394812	5.44363389408429	-0.192026919148186	0.496030761799144	0.936688453792126
Merged-chr2-90544003-2	chr2	90543903	90544103	+	644.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	36644.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-84068664-2	chr6	84068564	84068764	+	562.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077694, intron 10 of 54)	MER67C|LTR|ERV1	49278.0	NM_021469	26903.0	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-12796142-4	chr18	12796038	12796238	+	662.724976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252490, intron 3 of 13)	Lx7|LINE|L1	23769.0	NR_045524	64291.0	Mm.259470	NM_020573	ENSMUSG00000044252	Osbpl1a	G430090F17Rik|Gm753|ORP-1|Osbpl1b	oxysterol binding protein-like 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-107528488-4	chr1	107528382	107528582	+	881.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198028)	promoter-TSS (NM_198028)	-521.0	NM_001160307	241197.0	Mm.123919	NM_198028	ENSMUSG00000092572	Serpinb10	9830131G07|BB233602|Serpinb10-ps	serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-20312423-4	chr10	20312334	20312534	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153787)	promoter-TSS (NM_153787)	-35.0	NM_001025392	72567.0	Mm.294783	NM_153787	ENSMUSG00000037608	Bclaf1	2610102K23Rik|2700025J07Rik|2810454G14Rik|5730534O06Rik|AI450190|AW556225|Btf|mKIAA0164	BCL2-associated transcription factor 1	protein-coding	2.95398523960392	3.32713739947322	3.88010294474414	3.30001777900142	2.38490819942952	2.86331950809525	4.29670188532221	3.13684879381784	-0.0342336049250288	0.958304281553179	0.998431161219273
Merged-chr18-83982077-2	chr18	83981977	83982177	+	890.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	104485.0	NM_001081300	110796.0	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-49064919-1	chr7	49064819	49065019	+	575.0	f0_balb.idr	intron (NM_001111016, intron 2 of 38)	intron (NM_001111016, intron 2 of 38)	97239.0	NR_154465	108167511.0	Mm.400599	NR_154465		9130015G15Rik	-	RIKEN cDNA 9130015G15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-110609576-2	chr9	110609476	110609676	+	969.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081340, intron 18 of 20)	RLTR49|LTR|ERVK	14817.0	NM_026012	67169.0	Mm.46680	NM_026012	ENSMUSG00000032491	Nradd	2610311B09Rik|BB104149|NRDD|NRH2|PLAIDD	neurotrophin receptor associated death domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-146903839-2	chr5	146903739	146903939	+	595.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RodERV21-int|LTR|ERV1	-44818.0	NM_025652	66596.0	Mm.196528	NM_025652	ENSMUSG00000016503	Gtf3a	2010015D03Rik|2610111I01Rik|5330403M05Rik	general transcription factor III A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-136720418-1	chr6	136720318	136720518	+	603.0	f1_balb.idr	intron (NM_145067, intron 17 of 25)	ID_B1|SINE|B4	-58525.0	NM_025806	66857.0	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	1.76805045269852	0.914438576655542	1.18301079423321	0.848557513060298	2.30779478230816	3.4561162653104	0.886355096466388	1.90306731609136	2.93923180955285	0.0150574958589127	0.145536924260393
Merged-chr10-60094517-2	chr10	60094417	60094617	+	557.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026937, intron 9 of 10)	intron (NM_026937, intron 9 of 10)	-11740.0	NM_052994	94214.0	Mm.153429	NM_052994	ENSMUSG00000058297	Spock2	AA407235|Gcap26|mKIAA0275	sparc/osteonectin, cwcv and kazal-like domains proteoglycan 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-46185414-3	chr2	46185312	46185512	+	746.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	488807.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97435271-4	chr11	97435152	97435352	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14908.0	NM_021493	58996.0	Mm.394118	NM_021493	ENSMUSG00000049807	Arhgap23	A330041B18Rik	Rho GTPase activating protein 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126516829-2	chr8	126516729	126516929	+	995.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41764.0	NM_001159907	212728.0	Mm.482479	NM_001159907	ENSMUSG00000090290	Tarbp1	Gm17296|Gm179	TAR RNA binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-117577167-1	chr5	117577067	117577267	+	628.0	f0_c57.idr	intron (NM_001312914, intron 4 of 19)	intron (NM_001312914, intron 4 of 19)	163165.0	NM_001312914	333050.0	Mm.437947	NM_001034873	ENSMUSG00000061578	Ksr2	-	kinase suppressor of ras 2	protein-coding	0.0155195028464022	0.0358151820603572	0.0292100027348497	0.596152623652644	0.31234173196876	0.0372984906084513	0.0306703663046006	0.961765525869085	1.29956735242612	0.550351340862933	1
Merged-chr3-14592313-3	chr3	14592209	14592409	+	704.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007892, intron 3 of 7)	Lx3A|LINE|L1	13638.0	NM_007892	13559.0	Mm.153415	NM_007892	ENSMUSG00000027552	E2f5	AU024671|E2F-5	E2F transcription factor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-103255381-4	chr15	103255257	103255457	+	957.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008685)	promoter-TSS (NM_008685)	82.0	NM_008685	18022.0	Mm.457989	NM_008685	ENSMUSG00000058794	Nfe2	NF-E2|NF-E2/P45|p45|p45NFE2|p45nf-e2	nuclear factor, erythroid derived 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-49109494-2	chr13	49109394	49109594	+	643.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290313, intron 2 of 29)	intron (NM_001290313, intron 2 of 29)	38834.0	NM_029361	75607.0	Mm.342723	NM_029361	ENSMUSG00000037989	Wnk2	1810073P09Rik|AW122246|ESTM15|X83337|mKIAA1760	WNK lysine deficient protein kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-95147460-2	chr10	95147360	95147560	+	563.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	-1635.0	NR_131146	628062.0		NR_131146	ENSMUSG00000112481	Gm29684	-	predicted gene, 29684	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-10772417-1	chr18	10772317	10772517	+	816.0	f0_balb.idr	intron (NM_144860, intron 10 of 20)	intron (NM_144860, intron 10 of 20)	10559.0	NR_029547	387151.0		NR_029547	ENSMUSG00000065399	Mir133a-1	Mirn133|Mirn133a-1|mir-133a-1	microRNA 133a-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-17720868-2	chr16	17720768	17720968	+	721.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285886, intron 1 of 16)	intron (NM_001285886, intron 1 of 16)	2032.0	NM_001285886	94112.0	Mm.208970	NM_033609	ENSMUSG00000012114	Med15	A230074L19Rik|AW536074|Pcqap|mPcqap	mediator complex subunit 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-40854820-2	chr4	40854720	40854920	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022305)	promoter-TSS (NM_022305)	-283.0	NM_022305	14595.0	Mm.15622	NM_022305	ENSMUSG00000028413	B4galt1	B-1,4-GalT|B-1,4-GalT1|GalT|Ggtb|Ggtb2|b4Gal-T1|beta-1,4-GalT|beta-1,4-GalT1|beta4Gal-T1	UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127596901-4	chr10	127596799	127596999	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 6 of 88)	intron (NM_008512, intron 6 of 88)	24249.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-38200377-4	chr7	38200339	38200539	+	992.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16652.0	NM_028166	72244.0	Mm.187554	NM_028166		1600014C10Rik	AI428873	RIKEN cDNA 1600014C10 gene	protein-coding	0.679718257555999	0.826604125759513	3.47825597157195	1.55642328290173	0.690048365554946	0.836144629518054	3.50668237275388	1.568087354347	0.0400081508841412	0.988521692453625	0.998431161219273
Merged-chr6-89632494-4	chr6	89632388	89632588	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11500.0	NM_001178060	232223.0	Mm.229332	NM_153162	ENSMUSG00000000811	Txnrd3	AI196535|TGR|TR2	thioredoxin reductase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-51896023-3	chr14	51895927	51896127	+	983.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001039676, exon 4 of 4)	3' UTR (NM_001039676, exon 4 of 4)	2417.0	NM_001039676	214922.0	Mm.281343	NM_001039676	ENSMUSG00000072572	Slc39a2	F730005G13Rik|Gm1789|Gm289|Zip2	solute carrier family 39 (zinc transporter), member 2	protein-coding	-1.05482819034286	-1.00603124584385	-1.18299445782518	-1.19168084130822	-1.1968582763796	-1.1701281613353	-0.859385380719434	-1.19012598281783	0.199641860030482	0.948734330176728	1
Merged-chr18-62172902-4	chr18	62172802	62173002	+	996.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7079.0	NM_007420	11555.0	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-121562773-2	chr11	121562690	121562890	+	826.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_029878, intron 17 of 38)	intron (NM_029878, intron 17 of 38)	-43448.0	NM_178763	319530.0	Mm.11395	NM_178763	ENSMUSG00000039238	Zfp750	A030007D23Rik|Znf750	zinc finger protein 750	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-24445415-3	chr13	24445309	24445509	+	815.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111110, intron 11 of 16)	L1MEf|LINE|L1	30287.0	NM_001284520	12763.0	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-47915506-2	chr19	47915411	47915611	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001738, intron 1 of 1)	intron (NM_001001738, intron 1 of 1)	3788.0	NM_001001738	414801.0	Mm.29457	NM_001001738	ENSMUSG00000044948	Itprip	4833424O12Rik|DANGER	inositol 1,4,5-triphosphate receptor interacting protein	protein-coding	1.61578415845514	1.84282816676155	1.66697528247088	1.61408338418069	1.43177342426569	0.894418668386873	0.878694310753276	0.865007359425014	-2.60367411541274	0.0571363932674942	0.353483557798245
Merged-chr4-149655261-2	chr4	149655161	149655361	+	697.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_105990)	TTS (NR_105990)	306.0	NR_105990	102465983.0		NR_105990	ENSMUSG00000098580	Mir7023	Gm27912|mmu-mir-7023	microRNA 7023	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36332250-2	chr1	36332150	36332350	+	628.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MDa|LINE|L1	16508.0	NR_105863	102465541.0		NR_105863	ENSMUSG00000098680	Mir6898	Gm27816|mmu-mir-6898	microRNA 6898	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-39317651-1	chr18	39317551	39317751	+	710.0	f1_c57bl6.idr	intron (NM_001361073, intron 20 of 21)	MTE2b|LTR|ERVL-MaLR	169594.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	-1.8418762459921	-1.8125357239735	-1.82140854000656	-1.82869693527674	-1.56059678980999	-1.8106129477253	-1.81939992894326	-1.82739231600805	1.3620893379502	0.699511506488145	1
Merged-chr3-90271537-3	chr3	90271370	90271570	+	841.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356483, intron 11 of 27)	intron (NM_001356483, intron 11 of 27)	1321.0	NR_105979	102465612.0		NR_105979	ENSMUSG00000099199	Mir7012	Gm27370|mmu-mir-7012	microRNA 7012	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-63409493-4	chr4	63409390	63409590	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6045.0	NM_001045514	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115492909-2	chr11	115492813	115493013	+	669.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_136931, exon 1 of 1)	non-coding (NR_136931, exon 1 of 1)	-1099.0	NM_015807	50773.0	Mm.390379	NM_015807	ENSMUSG00000020736	Nt5c	Dnt|Dnt1|Umph-2|Umph2	5',3'-nucleotidase, cytosolic	protein-coding	-0.65997951801969	-0.649451021433323	-0.652905614690246	-0.655567474255561	-0.276951696790635	-0.648671623697759	-0.652144108979573	-0.0190684905545814	3.33768461380915	0.237774870593183	1
Merged-chr2-61579581-4	chr2	61579480	61579680	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011529, intron 1 of 7)	intron (NM_011529, intron 1 of 7)	994.0	NM_011529	21353.0	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-30987899-4	chr13	30987783	30987983	+	971.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13836.0	NM_025588	66482.0	Mm.293510	NM_025588	ENSMUSG00000021357	Exoc2	2410030I24Rik|AI648199|Sec5|Sec5l1	exocyst complex component 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-43299718-3	chr1	43299641	43299841	+	735.366638	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-102980.0	NM_001289533	14200.0	Mm.6799	NM_010212	ENSMUSG00000008136	Fhl2	FHL-2|SLIM-3|SLIM3	four and a half LIM domains 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-54640600-1	chr12	54640500	54640700	+	644.0	f0_c57.idr	Intergenic	Intergenic	5412.0	NR_035439	100316682.0		NR_035439	ENSMUSG00000106344	Mir1892	Mirn1892|mir-1892|mmu-mir-1892	microRNA 1892	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-8353715-4	chr10	8353621	8353821	+	842.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177387, intron 2 of 7)	intron (NM_177387, intron 2 of 7)	165104.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-30947956-1	chr16	30947856	30948056	+	552.0	f1_c57bl6.idr	Intergenic	Intergenic	133476.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	-0.715192145726504	-0.707861810441916	-0.556058074745342	-0.569655487083535	-0.479479851850956	-0.707310473677954	-0.552172909220016	-0.56727916140399	0.873835392792398	0.724965810845859	1
Merged-chr17-34030766-2	chr17	34030672	34030872	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077709, intron 2 of 7)	intron (NM_001077709, intron 2 of 7)	918.0	NM_001077709	14977.0	Mm.18556	NM_008202	ENSMUSG00000024327	Slc39a7	AA408174|AI117660|AL024048|H-2Ke4|H2-Ke4|Ke-4|Ke4|Ring5|Zip7	solute carrier family 39 (zinc transporter), member 7	protein-coding	1.48225232002666	0.720163761792737	1.41240010850339	0.692074520565937	1.58692105631601	1.92644792909286	0.707963018735815	0.694257922565044	0.765052686183794	0.621444282863078	0.979537295922371
Merged-chr3-87527307-3	chr3	87527216	87527416	+	873.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_012051, exon 2 of 5)	exon (NM_012051, exon 2 of 5)	1738.0	NM_001359750	27049.0	Mm.219460	NM_012051	ENSMUSG00000003382	Etv3	AI414410|METS|Pe1	ets variant 3	protein-coding	2.22035706541577	1.41714682490438	2.00808537199533	2.33877057335241	2.65852072288214	2.08985915098266	2.53174030422747	2.79117950248633	1.15567230795956	0.186693413026716	0.663884875368863
Merged-chr2-172345457-4	chr2	172345355	172345555	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025912)	promoter-TSS (NM_025912)	-122.0	NM_025912	67017.0	Mm.30013	NM_025912	ENSMUSG00000027495	Fam210b	2010011I20Rik|AI430961|AV108736	family with sequence similarity 210, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-118360572-3	chr4	118360497	118360697	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026601, intron 3 of 8)	intron (NM_026601, intron 3 of 8)	598.0	NR_003946	68180.0	Mm.193212	NM_026601	ENSMUSG00000006395	Hyi	2700033B16Rik|6430559E15Rik|HT036	hydroxypyruvate isomerase (putative)	protein-coding	1.60695190949267	2.2240985817903	3.2767797770643	2.50403026844844	3.11252918134565	2.80925644012429	1.97550680027342	2.99129839947418	0.462323554578141	0.575943654484384	0.965286201225318
Merged-chr9-42995471-2	chr9	42995371	42995571	+	590.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359232, intron 22 of 40)	HAL1|LINE|L1	-51100.0	NM_175481	110637.0	Mm.370291	NM_175481	ENSMUSG00000032017	Grik4	6330551K01Rik|GluK4|GluRgamma1|KA-1|KA1	glutamate receptor, ionotropic, kainate 4	protein-coding	-0.482865479248953	-0.472114967132356	-0.306088521799205	-0.0706294018110179	-0.482198381590578	-0.471315729949621	-0.474872991213691	0.0397450499106222	-0.00403605990587462	0.998768928038576	1
Merged-chr5-92442528-3	chr5	92442337	92442537	+	623.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007644, exon 12 of 12)	3' UTR (NM_007644, exon 12 of 12)	-7238.0	NM_183392	269113.0	Mm.275289	NM_183392	ENSMUSG00000034826	Nup54	3110079L04Rik|54kDa	nucleoporin 54	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-18884520-4	chr2	18884423	18884623	+	875.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355147, intron 3 of 8)	intron (NM_001355147, intron 3 of 8)	-82705.0	NR_131254	66774.0	Mm.87075	NR_131254	ENSMUSG00000097638	Carlr	4933439G12Rik|Carl	cardiac and apoptosis-related long non-coding RNA	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-78427546-4	chr9	78427466	78427666	+	985.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	15671.0	NR_125721	214763.0	Mm.101559	NM_173386	ENSMUSG00000032344	Mb21d1	E330016A19Rik|cGAS	Mab-21 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-76673126-4	chr2	76673035	76673235	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010222)	promoter-TSS (NM_010222)	-37.0	NM_001355080	14231.0	Mm.24720	NM_010222	ENSMUSG00000002732	Fkbp7	23kDa|FKBP-7|FKBP23	FK506 binding protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-68880552-4	chr8	68880435	68880635	+	949.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008509)	promoter-TSS (NM_008509)	-20.0	NM_008509	16956.0	Mm.1514	NM_008509	ENSMUSG00000015568	Lpl	-	lipoprotein lipase	protein-coding	1.34678181640279	2.1980896022854	2.61773886468014	1.17151662804103	1.96184903402565	1.72549763084267	1.84708506614364	2.88318177999678	0.526716435737743	0.615328900220892	0.977344463026735
Merged-chr9-66514344-2	chr9	66514244	66514444	+	943.25	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001302116)	TTS (NM_001302116)	249.0	NM_175206	74165.0	Mm.297998	NM_175206	ENSMUSG00000050503	Fbxl22	1110004B15Rik	F-box and leucine-rich repeat protein 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-50745538-4	chr15	50745435	50745635	+	828.520813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310481, intron 4 of 5)	intron (NM_001310481, intron 4 of 5)	143514.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-5014792-4	chr7	5014698	5014898	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025324)	promoter-TSS (NM_025324)	-70.0	NM_001110328	23877.0	Mm.38911	NM_011813	ENSMUSG00000061374	Fiz1	AI790204|mFLJ00416	Flt3 interacting zinc finger protein 1	protein-coding	3.68970614146739	3.90994024148524	4.42953941139904	4.40487465572409	3.95080992991157	3.93807815854788	4.14742587229522	3.12711382357679	-0.418530430929368	0.37919213463927	0.871744368943447
Merged-chr5-30873938-2	chr5	30873838	30874038	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144525, intron 9 of 16)	intron (NM_144525, intron 9 of 16)	4359.0	NM_144525	68796.0	Mm.205169	NM_144525	ENSMUSG00000038828	Tmem214	1110039B18Rik|4921530J21Rik|AI841294|AU018742|C76280	transmembrane protein 214	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97664251-2	chr11	97664151	97664351	+	975.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_139311, intron 1 of 19)	intron (NM_139311, intron 1 of 19)	839.0	NM_139311	246198.0	Mm.23685	NM_139311	ENSMUSG00000038437	Mllt6	AI315037|Af17	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-8671702-4	chr16	8671598	8671798	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025821, intron 1 of 3)	CpG	455.0	NM_025821	52502.0	Mm.142095	NM_025821	ENSMUSG00000008393	Carhsp1	1200011K09Rik|Crhsp-24|D16Ertd465e	calcium regulated heat stable protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-78246194-4	chr11	78246081	78246281	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009297)	promoter-TSS (NM_009297)	430.0	NM_001359106	20316.0	Mm.20755	NM_009143	ENSMUSG00000002064	Sdf2	AI853825	stromal cell derived factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-83513846-1	chr17	83513746	83513946	+	923.0	f0_balb.idr	intron (NM_009187, intron 1 of 2)	intron (NM_009187, intron 1 of 2)	487.0	NM_009187	20463.0	Mm.30072	NM_009187	ENSMUSG00000024248	Cox7a2l	COX7AR|COX7RP|EB1|SIG-81|SIG81|Silg81	cytochrome c oxidase subunit VIIa polypeptide 2-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-32397007-4	chr3	32396929	32397129	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-31364.0	NM_009517	22401.0	Mm.35705	NM_009517	ENSMUSG00000027663	Zmat3	Wig1	zinc finger matrin type 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-36044471-1	chr9	36044371	36044571	+	554.0	f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	84308.0	NM_001167587	546123.0	Mm.445255	NM_001167587	ENSMUSG00000091411	Gm5916	EG546123	predicted gene 5916	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115276262-1	chr5	115276162	115276362	+	580.666687	f1_balb.idr	Intergenic	B3|SINE|B2	-3367.0	NM_001302449	50849.0	Mm.30051	NM_016698	ENSMUSG00000041740	Rnf10	AA675014|RIE2|mKIAA0262	ring finger protein 10	protein-coding	1.20759441069025	0.925881900414448	1.80916742959808	0.896790592147869	1.21680815388102	1.78574661778882	1.60092728305653	1.76209375541515	1.17367886672594	0.356680190004209	0.85378439273359
Merged-chr4-59468796-2	chr4	59468696	59468896	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30163.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-118297826-1	chr7	118297726	118297926	+	541.0	f0_c57.idr	Intergenic	Intergenic	53919.0	NR_027879	67745.0	Mm.483404	NM_183267	ENSMUSG00000055159	4930583K01Rik	-	RIKEN cDNA 4930583K01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-184700911-3	chr1	184700812	184701012	+	627.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11585.0	NR_040627	74971.0	Mm.410816	NR_040627	ENSMUSG00000092578	4930488B22Rik	-	RIKEN cDNA 4930488B22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-11393736-1	chr8	11393636	11393836	+	715.333313	f0_balb.idr	intron (NM_009932, intron 4 of 47)	ID2|SINE|ID	-80910.0	NM_009931	12826.0	Mm.738	NM_009931	ENSMUSG00000031502	Col4a1	Bru|Col4a-1|Raw|Svc	collagen, type IV, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-109083267-2	chr9	109083167	109083367	+	587.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183250)	promoter-TSS (NM_183250)	771.0	NM_025689	66658.0	Mm.128227	NM_025689	ENSMUSG00000025645	Ccdc51	5730568A12Rik|AI551049	coiled-coil domain containing 51	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-75840974-1	chr13	75840874	75841074	+	752.0	f1_balb.idr	intron (NM_053108, intron 1 of 2)	intron (NM_053108, intron 1 of 2)	1088.0	NM_053108	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	0.963681314048735	1.03905782309033	2.39876318370571	1.85561183405159	2.52183370278933	1.31086536809719	1.93246645043891	1.23432548444919	0.399223075366116	0.744849287333222	0.998431161219273
Merged-chr1-88282348-6	chr1	88282191	88282391	+	829.438904	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Arthur1|DNA|hAT-Tip100	-4712.0	NM_198652	381280.0	Mm.384762	NM_198652	ENSMUSG00000044783	Hjurp	6430706D22Rik|A730008H23Rik|C330011F01Rik|Gm975|Mfleg1	Holliday junction recognition protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97434075-2	chr11	97433975	97434175	+	832.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2A1|LINE|L1	-16085.0	NM_021493	58996.0	Mm.394118	NM_021493	ENSMUSG00000049807	Arhgap23	A330041B18Rik	Rho GTPase activating protein 23	protein-coding	2.06033203445953	1.92395529375358	1.86596424024816	2.25932979557155	2.07642069756192	1.9367701522381	1.87892372444846	1.95743038030273	-0.209472790873059	0.818323929384255	0.998431161219273
Merged-chr19-44069778-4	chr19	44069660	44069860	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164359)	promoter-TSS (NM_001164359)	15.0	NM_001164359	226144.0	Mm.279865	NM_145502	ENSMUSG00000025198	Erlin1	2810439N09Rik|C80197|Keo4|Spfh1	ER lipid raft associated 1	protein-coding	0.77038381453635	0.817743548508138	1.59927440878243	1.54648126677194	1.73004664114713	0.82111738899128	1.02632276824107	1.7498845183274	0.544223363115403	0.705064487761238	0.998431161219273
Merged-chr7-110122982-4	chr7	110122872	110123072	+	939.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009516, intron 1 of 10)	CpG	913.0	NM_009516	22390.0	Mm.287173	NM_009516	ENSMUSG00000031016	Wee1	Wee1A	WEE 1 homolog 1 (S. pombe)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71230245-2	chr17	71230145	71230345	+	674.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357791, intron 5 of 19)	intron (NM_001357791, intron 5 of 19)	25591.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-38712898-4	chr16	38712780	38712980	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_020260, exon 1 of 12)	5' UTR (NM_020260, exon 1 of 12)	155.0	NM_020260	12549.0	Mm.370848	NM_020260	ENSMUSG00000022799	Arhgap31	5830477L08Rik|AU041750|Cdgap|D330026I07Rik	Rho GTPase activating protein 31	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-101696063-4	chr13	101695972	101696172	+	885.6749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077495, intron 7 of 15)	intron (NM_001077495, intron 7 of 15)	-3442.0	NM_001024955	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-53939551-4	chr19	53939446	53939646	+	846.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195348, intron 2 of 3)	intron (NM_001195348, intron 2 of 3)	-4760.0	NM_001168505	56392.0	Mm.228669	NM_019658	ENSMUSG00000024976	Shoc2	AU017287|Sur8|mKIAA0862	soc-2 (suppressor of clear) homolog (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-31630080-2	chr18	31629980	31630180	+	600.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	-4288.0	NM_001357554	269003.0	Mm.194538	NM_172965	ENSMUSG00000024260	Sap130	2610304F09Rik|6720406D06	Sin3A associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-25334112-2	chr2	25334012	25334212	+	652.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001029983, intron 2 of 12)	B1_Mus1|SINE|Alu	1369.0	NM_001029983	227619.0	Mm.270798	NM_001029983	ENSMUSG00000036646	Man1b1	E430019H13Rik|ERMan1|Gm108|MANA-ER	mannosidase, alpha, class 1B, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34653673-2	chr17	34653571	34653771	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_017406, intron 15 of 17)	intron (NM_017406, intron 15 of 17)	6525.0	NM_017406	12915.0	Mm.4068	NM_017406	ENSMUSG00000015461	Atf6b	AA617266|ATF6beta|Creb-rp|Crebl1	activating transcription factor 6 beta	protein-coding	0.55894497868224	1.37425626854601	1.73369323960859	0.579419409135548	0.925444220386634	0.609906645985555	1.75177350367188	0.581529823004887	-0.345075929159717	0.831277141818592	0.998431161219273
Merged-chr18-36025696-3	chr18	36025601	36025801	+	967.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167891, intron 5 of 9)	L2|LINE|L2	60871.0	NR_110349	74002.0	Mm.196944	NM_028707	ENSMUSG00000024347	Psd2	6330404E20Rik|AW125584|EFA6C	pleckstrin and Sec7 domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19590071-4	chr7	19589980	19590180	+	800.104187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_125836, intron 6 of 17)	intron (NR_125836, intron 6 of 17)	12793.0	NM_022409	63872.0	Mm.23310	NM_022409	ENSMUSG00000011267	Zfp296	2210018A16Rik|Znf296	zinc finger protein 296	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-51270165-4	chr3	51270069	51270269	+	903.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023502, intron 4 of 9)	intron (NM_023502, intron 4 of 9)	-6592.0	NR_073429	67746.0	Mm.441177	NR_073429	ENSMUSG00000087440	4930577N17Rik	-	RIKEN cDNA 4930577N17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-108630907-2	chr6	108630807	108631007	+	767.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_104577, intron 1 of 6)	ORR1D2|LTR|ERVL-MaLR	-7740.0	NR_040757	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-75229227-4	chr10	75229135	75229335	+	899.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145826, intron 3 of 18)	URR1A|DNA|hAT-Charlie	16845.0	NM_001145826	74392.0	Mm.27716	NM_153406	ENSMUSG00000033444	Specc1l	4930470P14Rik|4932439K10Rik|9530057A13Rik|AI317249|Cytsa|mKIAA0376	sperm antigen with calponin homology and coiled-coil domains 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-65352225-1	chr3	65352125	65352325	+	990.0	f1_c57bl6.idr	intron (NM_001357358, intron 8 of 13)	MER5B|DNA|hAT-Charlie	-2796.0	NR_040390	319798.0	Mm.445698	NR_040390		A730090N16Rik	-	RIKEN cDNA A730090N16 gene	ncRNA	0.41146072449365	0.960804085092373	0.429206847524667	0.991725775937493	0.930159217835443	1.21179087514885	0.431100093974741	0.423726347874275	0.352244441196133	0.844808539800378	1
Merged-chr3-146652902-2	chr3	146652802	146653002	+	852.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1585.0	NM_029144	75015.0	Mm.250432	NM_029144	ENSMUSG00000048652	4930503B20Rik	1700013A07Rik|1700095G21Rik|4930483N21Rik|Gm1652|Samd13	RIKEN cDNA 4930503B20 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-16797974-4	chr1	16797827	16798027	+	901.1749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	109471.0	NM_001159711	17087.0	Mm.116844	NM_016923	ENSMUSG00000025779	Ly96	ESOP-1|MD-2|MD2	lymphocyte antigen 96	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-103527152-2	chr6	103527052	103527252	+	588.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007697, intron 1 of 26)	intron (NM_007697, intron 1 of 26)	16276.0	NM_007697	12661.0	Mm.251288	NM_007697	ENSMUSG00000030077	Chl1	A530023M13Rik|AI465420|CALL|LICAM2	cell adhesion molecule L1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-36020158-2	chr17	36020058	36020258	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008207, intron 1 of 5)	B3|SINE|B2	402.0	NM_008207	15042.0	Mm.439654	NM_008207	ENSMUSG00000053835	H2-T24	H-2T24	histocompatibility 2, T region locus 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-174674180-4	chr2	174674081	174674281	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001099328, intron 3 of 4)	intron (NM_001099328, intron 3 of 4)	30647.0	NM_001099328	100043757.0	Mm.48711	NM_001099328	ENSMUSG00000050600	Zfp831	-	zinc finger protein 831	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-55451451-2	chr11	55451351	55451551	+	711.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_009720, intron 2 of 3)	intron (NM_009720, intron 2 of 3)	9757.0	NM_009720	11927.0	Mm.217759	NM_009720	ENSMUSG00000018585	Atox1	AI256639|Atx1	antioxidant 1 copper chaperone	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76287862-4	chr15	76287743	76287943	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028852, intron 4 of 4)	intron (NM_028852, intron 4 of 4)	3125.0	NR_037240	100526548.0		NR_037240	ENSMUSG00000093169	Mir3079	mmu-mir-3079	microRNA 3079	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-10321341-4	chr10	10321231	10321431	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	150983.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126665932-4	chr8	126665797	126665997	+	960.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72461.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115479782-2	chr5	115479682	115479882	+	858.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001167691, exon 4 of 5)	exon (NM_001167691, exon 4 of 5)	4515.0	NM_001167691	75387.0	Mm.332616	NM_133760	ENSMUSG00000029524	Sirt4	4930596O17Rik	sirtuin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-35133456-2	chr4	35133356	35133556	+	564.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178061, intron 1 of 3)	RMER1B|Other|Other	-18599.0	NM_199157	387510.0	Mm.386929	NM_199157	ENSMUSG00000042993	Ifnk	-	interferon kappa	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-118595615-3	chr14	118595513	118595713	+	812.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163676, intron 17 of 29)	intron (NM_001163676, intron 17 of 29)	-3141.0	NR_105815	102465208.0		NR_105815	ENSMUSG00000098433	Mir6391	Gm27914|mmu-mir-6391	microRNA 6391	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-12373811-1	chr12	12373711	12373911	+	582.0	f1_balb.idr	3' UTR (NM_029758, exon 13 of 13)	3' UTR (NM_029758, exon 13 of 13)	18664.0	NR_045829	70858.0	Mm.410838	NR_045829	ENSMUSG00000114136	4921511I17Rik	-	RIKEN cDNA 4921511I17 gene	ncRNA	-0.778082596538266	-1.01822870734921	-1.02945680142399	-1.03348344941628	-0.568232152040811	-1.01579553252409	-1.02691500703827	-1.0331489920742	0.87297571659195	0.788523652777195	1
Merged-chr17-10940366-2	chr17	10940266	10940466	+	755.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001317726, intron 1 of 6)	intron (NM_001317726, intron 1 of 6)	100007.0	NM_016694	50873.0	Mm.311110	NM_016694	ENSMUSG00000023826	Park2	PRKN	Parkinson disease (autosomal recessive, juvenile) 2, parkin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100532756-2	chr7	100532656	100532856	+	623.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-4344.0	NM_183270	68185.0	Mm.228995	NM_183270	ENSMUSG00000044881	Coa4	5330414O08Rik|AI115477|AW047259|Chchd8|E2ig2	cytochrome c oxidase assembly factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-31080817-2	chr2	31080717	31080917	+	662.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355105, intron 6 of 15)	intron (NM_001355105, intron 6 of 15)	15683.0	NM_001177650	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-47943183-4	chr6	47943084	47943284	+	980.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027963)	promoter-TSS (NR_027963)	9.0	NR_027963	232785.0	Mm.482185	NR_027963	ENSMUSG00000072653	Zfp783	A230106D06Rik|Gm20494	zinc finger protein 783	ncRNA	2.59676033710798	1.45991113818125	1.41279123180222	2.97780851216739	2.05278715526554	2.19727326682622	1.6406503084867	1.12829677899293	-1.1457553551721	0.280289231513906	0.783412873231201
Merged-chr18-9450175-4	chr18	9450083	9450283	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026484)	promoter-TSS (NM_026484)	-29.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	5.13172414538572	5.20421848036775	5.08525004648162	4.95655082635133	5.29750237740241	5.77204699627107	4.92067227553418	5.78897067687411	0.454273625241297	0.136821771846702	0.577075563141574
Merged-chr1-188263341-1	chr1	188263241	188263441	+	545.0	f1_balb.idr	exon (NM_021408, exon 1 of 71)	exon (NM_021408, exon 1 of 71)	503.0	NM_021408	22283.0	Mm.331238	NM_021408	ENSMUSG00000026609	Ush2a	A930011D15Rik|A930037M10Rik|Gm676|Gm983|Mush2a|Ushrn	usherin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-66084637-1	chr17	66084537	66084737	+	575.0	f1_c57bl6.idr	intron (NM_028388, intron 5 of 7)	B3|SINE|B2	-7591.0	NM_001025572	106585.0	Mm.34706	NM_001025572	ENSMUSG00000034647	Ankrd12	2900001A12Rik|AI447928|ANCO-2|AV347965|GAC-1|mKIAA0874	ankyrin repeat domain 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-123860084-3	chr8	123860024	123860224	+	971.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028536)	promoter-TSS (NM_028536)	85.0	NM_028536	73420.0	Mm.157746	NM_028536	ENSMUSG00000031971	Ccsap	1700054N08Rik|AI853424	centriole, cilia and spindle associated protein	protein-coding	2.48962132674333	1.2386635127478	2.19874981011016	2.02545569581399	2.13533904291068	1.24443167366091	2.32005269008723	1.77343658216513	-0.349430269429908	0.742908256680485	0.998431161219273
Merged-chr10-75317251-6	chr10	75317344	75317544	+	930.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001331095)	promoter-TSS (NM_001331095)	-156.0	NM_001331095	11540.0	Mm.333734	NM_009630	ENSMUSG00000020178	Adora2a	A2AAR|A2aR|AA2AR	adenosine A2a receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-25749384-3	chr14	25749287	25749487	+	923.2666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001101433, intron 2 of 3)	intron (NM_001101433, intron 2 of 3)	19469.0	NM_001101433	71918.0	Mm.41904	NM_001101433	ENSMUSG00000055538	Zcchc24	2310047A01Rik	zinc finger, CCHC domain containing 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101148789-1	chr15	101148689	101148889	+	578.0	f1_balb.idr	Intergenic	Intergenic	20267.0	NM_001277257	11482.0	Mm.279542	NM_009612	ENSMUSG00000000530	Acvrl1	AI115505|AI427544|Acvrlk1|Alk1	activin A receptor, type II-like 1	protein-coding	1.63637472638385	1.60716946042472	1.55820215435265	1.89248642082861	2.5436007893928	2.57434705894972	2.91382343484747	2.59298840989372	2.50451686810119	0.00539497525512028	0.0708193797712616
Merged-chr17-27853921-2	chr17	27853821	27854021	+	605.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-2586.0	NM_001080769	224648.0	Mm.291291	NM_001080769	ENSMUSG00000039512	Uhrf1bp1	1110020K19Rik|AA408674|F830021D11Rik|mKIAA4127	UHRF1 (ICBP90) binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-121587609-4	chr10	121587504	121587704	+	970.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019786)	promoter-TSS (NM_019786)	-810.0	NM_019786	56480.0	Mm.34580	NM_019786	ENSMUSG00000020115	Tbk1	1200008B05Rik|AI462036|AW048562	TANK-binding kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-44539420-3	chr11	44539323	44539523	+	708.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166553, intron 3 of 5)	intron (NM_001166553, intron 3 of 5)	20046.0	NM_001166553	74315.0	Mm.156771	NM_028862	ENSMUSG00000019189	Rnf145	3732413I11Rik|TMRF1	ring finger protein 145	protein-coding	2.82584465457898	3.17042097296466	3.624853666502	2.8742627319452	2.84956937327	3.2945406346283	3.58568283967537	2.88916488450013	0.0420000411086966	0.945868665858169	0.998431161219273
Merged-chr2-68349751-4	chr2	68349659	68349859	+	772.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016866, intron 10 of 17)	intron (NM_016866, intron 10 of 17)	122222.0	NM_016866	53416.0	Mm.198414	NM_016866	ENSMUSG00000027030	Stk39	AW227544|AW556857|DCHT|RF005|Rnl5|SPAK	serine/threonine kinase 39	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97083897-2	chr11	97083797	97083997	+	836.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20129.0	NR_106181	102465893.0		NR_106181	ENSMUSG00000098769	Mir8103	Gm27841|mmu-mir-8103	microRNA 8103	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116222794-2	chr11	116222694	116222894	+	635.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_025276, exon 22 of 22)	exon (NM_025276, exon 22 of 22)	6792.0	NR_004853	69681.0	Mm.33677	NR_004853	ENSMUSG00000092300	Cdk3-ps	2310050O10Rik|Cdk3	cyclin-dependent kinase 3, pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128705078-4	chr10	128704971	128705171	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016756)	promoter-TSS (NM_016756)	-20.0	NM_016756	12566.0	Mm.111326	NM_016756	ENSMUSG00000025358	Cdk2	A630093N05Rik	cyclin-dependent kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84709305-4	chr8	84709172	84709372	+	969.81665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081982, intron 9 of 9)	intron (NM_001081982, intron 9 of 9)	7815.0	NM_008535	17095.0	Mm.4925	NM_008535	ENSMUSG00000034041	Lyl1	Lyl-1|bHLHa18	lymphoblastomic leukemia 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-57073601-4	chr9	57073503	57073703	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110351, intron 1 of 21)	intron (NM_001110351, intron 1 of 21)	1563.0	NM_001110351	20466.0	Mm.15755	NM_011378	ENSMUSG00000042557	Sin3a	AW553200|Sin3|mKIAA4126|mSin3A	transcriptional regulator, SIN3A (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-18235185-4	chr10	18235066	18235266	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144820)	promoter-TSS (NM_144820)	-185.0	NM_144820	215814.0	Mm.296565	NM_144820	ENSMUSG00000059554	Ccdc28a	1700009P13Rik|AI480677	coiled-coil domain containing 28A	protein-coding	3.53535337827671	4.51903888848868	3.94992630725917	3.15276688342844	3.35523814305089	3.83239752716394	3.2662495058746	3.35550233754329	-0.626395128855436	0.248885840584137	0.747654560673127
Merged-chr10-81599048-2	chr10	81598948	81599148	+	831.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_053254, intron 3 of 13)	intron (NM_053254, intron 3 of 13)	-1458.0	NM_001359134	114606.0	Mm.206764	NM_053254	ENSMUSG00000034758	Tle6	1810057E06Rik|Grg6	transducin-like enhancer of split 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-67958645-1	chr5	67958545	67958745	+	707.0	f0_balb.idr	intron (NM_001256184, intron 2 of 3)	(CAAAA)n|Simple_repeat|Simple_repeat	-15564.0	NR_038182	73865.0	Mm.66946	NR_038182	ENSMUSG00000106880	4930425K10Rik	-	RIKEN cDNA 4930425K10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-42607298-2	chr19	42607202	42607402	+	707.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164311, intron 3 of 14)	intron (NM_001164311, intron 3 of 14)	5504.0	NM_001164311	67573.0	Mm.178767	NM_053083	ENSMUSG00000025185	Loxl4	4833426I20Rik|Loxc	lysyl oxidase-like 4	protein-coding	-0.0492961015174031	0.459695967668437	-0.0384200544697542	-0.0425094111116619	-0.0482866837361843	0.469183425142785	0.540845284456123	-0.0417950782495684	1.20423383556915	0.597974574735988	1
Merged-chr10-122544408-4	chr10	122544212	122544412	+	861.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25579.0	NR_040616	319272.0	Mm.411763	NR_040616	ENSMUSG00000112095	A130077B15Rik	-	RIKEN cDNA A130077B15 gene	ncRNA	2.75372816038743	3.36530377016905	3.39719537655846	2.14621717162472	3.34180257911595	2.10893822980886	3.42330417881437	1.46318774176193	-0.288574714652989	0.728094293902287	0.998431161219273
Merged-chr15-64003333-4	chr15	64003223	64003423	+	955.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144846, intron 1 of 11)	GA-rich|Low_complexity|Low_complexity	-5257.0	NM_001360035	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-34518451-4	chr14	34518351	34518551	+	659.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030062, intron 1 of 2)	intron (NM_030062, intron 1 of 2)	4350.0	NM_030062	78243.0	Mm.117483	NM_030062	ENSMUSG00000021797	9230112D13Rik	-	RIKEN cDNA 9230112D13 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-62889519-1	chr5	62889419	62889619	+	774.666687	f0_balb.idr	Intergenic	Intergenic	75696.0	NM_001170705	100322896.0	Mm.479821	NM_001170705	ENSMUSG00000090326	Dthd1	Gm17384	death domain containing 1	protein-coding	1.05032352787006	0.231229746694899	0.416445347812968	0.217577605787367	1.06558963765329	0.232953753673044	0.421857041427535	0.218622993101067	0.0417586813006194	0.982846276651225	1
Merged-chr17-45600341-2	chr17	45600241	45600441	+	866.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199115)	promoter-TSS (NM_001199115)	-738.0	NM_001199115	63959.0	Mm.29744	NM_022880	ENSMUSG00000023942	Slc29a1	1200014D21Rik|AA407560|ENT1	solute carrier family 29 (nucleoside transporters), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-155071778-2	chr1	155071678	155071878	+	848.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_151545, intron 3 of 6)	intron (NR_151545, intron 3 of 6)	11486.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-35808363-4	chr8	35808281	35808481	+	796.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	18178.0	NM_027998	71908.0	Mm.37817	NM_027998	ENSMUSG00000055976	Cldn23	2310014B08Rik	claudin 23	protein-coding	2.04243067815612	1.2829924238078	1.74022787133332	2.82346782786267	2.88630954611908	1.29112294496895	3.0689052519593	2.03624818808953	0.829936187152838	0.417128444845177	0.897222495742637
Merged-chr9-32672563-4	chr9	32672466	32672666	+	972.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23476.0	NM_011808	23871.0	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-73678243-3	chr12	73678181	73678381	+	670.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008856, intron 2 of 13)	intron (NM_008856, intron 2 of 13)	93485.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-117787172-3	chr4	117787096	117787296	+	893.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21530.0	NM_029416	75753.0	Mm.3848	NM_029416	ENSMUSG00000048626	Klf17	7420700M05Rik|AA420409|AU043468|C85123|D4Ertd561e|Gzf|Zfp393	Kruppel-like factor 17	protein-coding	0.996950941456121	0.823816199878614	0.60116769713672	0.775982589729839	0.88531718152264	1.60390361466235	1.11031972742512	0.779674807992829	1.61737776660423	0.261841690401292	0.76323720334665
Merged-chr4-72380322-3	chr4	72380210	72380410	+	893.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	179066.0	NR_027923	68285.0	Mm.37541	NR_027923		C630043F03Rik	AI851307	RIKEN cDNA C630043F03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-121423876-1	chr9	121423776	121423976	+	761.0	f1_c57bl6.idr	intron (NM_001357968, intron 1 of 14)	intron (NM_001357968, intron 1 of 14)	20430.0	NM_001357968	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	2.48990050094023	2.18701120066873	3.27811448847284	1.54327653421581	2.58586626291981	1.11974434183183	1.08318338573058	1.05026353364101	-1.86549507058952	0.102381299811039	0.497853621372405
Merged-chr4-88552821-2	chr4	88552721	88552921	+	666.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4A|LINE|L1	5424.0	NM_206870	242517.0	Mm.377261	NM_206870	ENSMUSG00000096011	Ifna15	Gm12597|Ifnaa|MuIFN-alpha-A	interferon alpha 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-52072801-4	chr2	52072711	52072911	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175238)	promoter-TSS (NM_175238)	-26.0	NM_001355415	51869.0	Mm.254530	NM_175238	ENSMUSG00000036202	Rif1	5730435J01Rik|6530403D07Rik|AU016181|AW549474|D2Ertd145e	replication timing regulatory factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-24470863-4	chr18	24470787	24470987	+	933.591675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026529)	promoter-TSS (NM_026529)	16.0	NM_026529	68046.0	Mm.276574	NM_026529	ENSMUSG00000024273	2700062C07Rik	AI195775|C87515	RIKEN cDNA 2700062C07 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-9378290-2	chr18	9378207	9378407	+	609.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_026484, intron 2 of 9)	intron (NM_026484, intron 2 of 9)	71847.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-9783906-4	chr13	9783806	9784006	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18585.0	NM_144516	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-96163495-4	chr10	96163390	96163590	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62717.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-162207413-4	chr1	162207339	162207539	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038619, intron 14 of 20)	intron (NM_001038619, intron 14 of 20)	-10184.0	NR_002870	474332.0	Mm.479755	NR_002870	ENSMUSG00000078190	Dnm3os	6030416H16Rik|Hag2|Npn1|P/L01	dynamin 3, opposite strand	ncRNA	3.30538071808214	3.20141475910485	2.84789402024239	2.3358897337824	2.09767625850732	1.99542109727655	1.42681446158791	2.58488574739913	-1.80456844212667	0.0285816197181346	0.229328314787012
Merged-chr4-141723467-4	chr4	141723379	141723579	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001017966)	promoter-TSS (NM_001017966)	-60.0	NM_001017966	68817.0	Mm.393721	NM_001017966	ENSMUSG00000078515	Ddi2	1110056G13Rik|1700027M01Rik|9130022E05Rik|AI604911|AU040698	DNA-damage inducible protein 2	protein-coding	5.36451948779135	4.52306750846729	4.18086522701756	4.90055007407541	4.94103168659605	5.62818783604678	3.81554409559197	5.7263754643627	0.458221648122914	0.285309641189004	0.789956555765925
Merged-chr10-39261339-4	chr10	39261246	39261446	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-97552.0	NM_001127376	327743.0	Mm.208111	NM_001127376	ENSMUSG00000062074	Wisp3	CCN6|Gm735|WISP-3	WNT1 inducible signaling pathway protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27679486-2	chr2	27679386	27679586	+	747.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011305, intron 1 of 9)	intron (NM_011305, intron 1 of 9)	2285.0	NM_011305	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-45478963-3	chr4	45478812	45479012	+	799.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033306, intron 2 of 5)	intron (NM_001033306, intron 2 of 5)	51916.0	NM_001033306	230126.0	Mm.251716	NM_001033306	ENSMUSG00000044813	Shb	BC028832	src homology 2 domain-containing transforming protein B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-97320302-4	chr5	97320202	97320402	+	870.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	72028.0	NM_001033191	97243.0	Mm.11746	NM_001033191	ENSMUSG00000046000	Naa11	Ard1b|Ard2|C80008	N(alpha)-acetyltransferase 11, NatA catalytic subunit	protein-coding	3.03129934074024	3.52716305821359	1.52436395542606	2.87722346632105	2.75162130942337	2.75877409518567	2.78155803606881	2.3160873409501	-0.486274804644253	0.537707125547858	0.953963493057627
Merged-chr18-36471125-4	chr18	36471059	36471259	+	977.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	-16664.0	NM_026027	67199.0	Mm.30184	NM_026027	ENSMUSG00000024346	Pfdn1	2700086I23Rik|AA408327|AU044714	prefoldin 1	protein-coding	0.193405199397949	0.214135992657079	0.54356033834718	1.020517579477	0.194706534574304	0.215657814662088	0.551335220303207	0.646863059900821	-0.790779192379319	0.686573194850166	1
Merged-chr8-83611372-2	chr8	83611272	83611472	+	741.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_018808, exon 3 of 3)	3' UTR (NM_018808, exon 3 of 3)	2824.0	NM_001308227	81489.0	Mm.282092	NM_018808	ENSMUSG00000005483	Dnajb1	0610007I11Rik|DjB1|HSPF1|Hdj1|Hsp40	DnaJ heat shock protein family (Hsp40) member B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-96080715-3	chr10	96080633	96080833	+	800.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	140070.0	NM_001001932	216238.0	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-38737145-1	chr6	38737045	38737245	+	550.0	f1_balb.idr	intron (NM_010433, intron 7 of 14)	intron (NM_010433, intron 7 of 14)	74076.0	NM_001101507	665180.0	Mm.349066	NM_001101507	ENSMUSG00000079598	Clec2l	AI414054|AW122724|Gm1064	C-type lectin domain family 2, member L	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21264639-1	chr9	21264539	21264739	+	545.0	f1_c57bl6.idr	promoter-TSS (NM_153583)	promoter-TSS (NM_153583)	-646.0	NM_153583	235040.0	Mm.440165	NM_153583	ENSMUSG00000002820	Atg4d	9830134P12Rik|APG4-D|Apg4d|Atg4dl|Autl4	autophagy related 4D, cysteine peptidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-13674475-4	chr8	13674377	13674577	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 1 of 23)	intron (NM_009025, intron 1 of 23)	3110.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-4607491-2	chr2	4607391	4607591	+	606.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177844, intron 11 of 11)	intron (NM_001177844, intron 11 of 11)	44644.0	NM_026045	67229.0	Mm.38529	NM_026045	ENSMUSG00000039449	Prpf18	2810441A10Rik	pre-mRNA processing factor 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96558835-2	chr3	96558735	96558935	+	995.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023719, intron 1 of 7)	intron (NM_023719, intron 1 of 7)	878.0	NM_001009935	56338.0	Mm.410189	NM_023719	ENSMUSG00000038393	Txnip	1200008J08Rik|AA682105|Hyplip1|THIF|Tbp-2|VDUP1	thioredoxin interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140503186-3	chr5	140503084	140503284	+	744.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVB7_1-LTR_MM|LTR|ERVK	-2425.0	NM_021528	59031.0	Mm.28934	NM_021528	ENSMUSG00000036599	Chst12	AI595374|C4S-2|C4ST2	carbohydrate sulfotransferase 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-62488476-4	chr10	62488372	62488572	+	818.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1667.0	NM_001358543	30930.0	Mm.260703	NM_133672	ENSMUSG00000020078	Vps26a	AA407240|HB58|Vps26	VPS26 retromer complex component A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-87364815-4	chr3	87364710	87364910	+	856.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009690, intron 2 of 5)	intron (NM_009690, intron 2 of 5)	6929.0	NM_009690	11801.0	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-111876787-4	chr8	111876646	111876846	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025781)	promoter-TSS (NM_025781)	-71.0	NM_025781	66817.0	Mm.345350	NM_025781	ENSMUSG00000031953	Tmem170	9030409E16Rik|AA403674|D8Bwg1414e|Tmem170a	transmembrane protein 170	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-146655648-2	chr5	146655548	146655748	+	818.583313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70409.0	NM_001359057	14738.0	Mm.153539	NM_008151	ENSMUSG00000041468	Gpr12	Gpcr01|Gpcr12|Gpcr20|Gpcr21	G-protein coupled receptor 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-93901070-3	chr13	93900942	93901142	+	879.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009712, intron 6 of 7)	intron (NM_009712, intron 6 of 7)	110265.0	NR_049198	100885837.0		NR_049198	ENSMUSG00000093480	Mir5624	Gm25075|mir-5624|mmu-mir-5624	microRNA 5624	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36366712-2	chr18	36366612	36366812	+	743.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081365, exon 2 of 3)	exon (NM_001081365, exon 2 of 3)	18088.0	NM_001081365	66060.0	Mm.272527	NM_001081365	ENSMUSG00000046727	Cystm1	0610010O12Rik	cysteine-rich transmembrane module containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-33909309-2	chr1	33909209	33909409	+	772.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001276764, intron 2 of 102)	intron (NM_001276764, intron 2 of 102)	1084.0	NM_001276764	13518.0	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97807472-2	chr6	97807372	97807572	+	934.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113198, intron 1 of 9)	intron (NM_001113198, intron 1 of 9)	414.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-65956759-2	chr5	65956659	65956859	+	634.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10365.0	NM_001081104	231252.0	Mm.140015	NM_001081104	ENSMUSG00000029205	Chrna9	2410015I05Rik|Acra9|EG666827|Gm8311	cholinergic receptor, nicotinic, alpha polypeptide 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27684189-3	chr2	27684090	27684290	+	674.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011305, intron 1 of 9)	intron (NM_011305, intron 1 of 9)	6989.0	NM_011305	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-56818071-5	chr19	56817978	56818178	+	785.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4395.0	NM_170757	213993.0	Mm.469677	NM_170757	ENSMUSG00000035173	Ccdc186	1810028B20Rik|A630007B06Rik|AI159700|Otg1	coiled-coil domain containing 186	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-63052996-4	chr11	63052884	63053084	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8675.0	NM_027660	71062.0	Mm.23534	NM_027660	ENSMUSG00000042189	Tekt3	4933407G07Rik	tektin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-64590080-1	chr18	64589980	64590180	+	825.0	f1_c57bl6.idr	intron (NM_001001488, intron 2 of 27)	intron (NM_001001488, intron 2 of 27)	70920.0	NM_001001488	54670.0	Mm.270043	NM_001001488	ENSMUSG00000039529	Atp8b1	AI451886|FIC1|Ic	ATPase, class I, type 8B, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3903643-3	chr12	3903543	3903743	+	843.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153743, intron 14 of 17)	intron (NM_153743, intron 14 of 17)	11899.0	NM_153743	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-108567683-2	chr5	108567557	108567757	+	586.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17630.0	NM_007756	12889.0	Mm.5195	NM_007756	ENSMUSG00000033615	Cplx1	921-S	complexin 1	protein-coding	1.35095446280945	1.52903375737164	0.901854280802334	0.88781125216292	2.13755345102337	0.923649663038296	1.9558966228298	1.68685927967772	1.92712324876647	0.144894360030139	0.594678175019936
Merged-chr17-45581549-5	chr17	45581505	45581705	+	834.676208	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8344.0	NM_008302	15516.0	Mm.2180	NM_008302	ENSMUSG00000023944	Hsp90ab1	90kDa|AL022974|C81438|Hsp84|Hsp84-1|Hsp90|Hspcb	heat shock protein 90 alpha (cytosolic), class B member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-67823207-2	chr5	67823107	67823307	+	622.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038999, intron 1 of 36)	intron (NM_001038999, intron 1 of 36)	24224.0	NM_009727	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133139173-3	chr4	133139081	133139281	+	734.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153423, intron 1 of 8)	intron (NM_153423, intron 1 of 8)	8548.0	NM_153423	242687.0	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	0.388217291822832	0.446157618637326	2.26711821091817	0.413429478028707	0.621911114547231	1.4629116776986	0.701576143819377	0.669635738815219	-0.927231545019766	0.554893511626467	0.959914380895535
Merged-chr12-73304873-4	chr12	73304784	73304984	+	990.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037717, intron 3 of 15)	intron (NM_001037717, intron 3 of 15)	18036.0	NM_001037717	625098.0	Mm.32075	NM_001037717	ENSMUSG00000044712	Slc38a6	AW322671|EG625098	solute carrier family 38, member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-17634256-4	chr17	17634149	17634349	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9760.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	5.07716778177345	5.48381646193714	6.09108082110061	5.47463133733691	4.47388313300512	4.73042223954147	5.66766009261713	5.24860305725799	-0.54403098569443	0.115273189025988	0.531964895394323
Merged-chr12-59052632-3	chr12	59052534	59052734	+	815.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001306217, intron 1 of 4)	Lx9|LINE|L1	8838.0	NM_001306218	78232.0	Mm.290070	NM_030057	ENSMUSG00000020993	Trappc6b	5830498C14Rik|C79212	trafficking protein particle complex 6B	protein-coding	1.22319991680479	0.254606454285725	0.246363829263501	0.711877988631005	0.951163468025256	0.256453688472278	0.248188640989557	0.241073182990414	-1.10563966852591	0.58399204645153	1
Merged-chr10-68094266-2	chr10	68094181	68094381	+	588.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	114711.0	NM_001359319	170799.0	Mm.209844	NM_133244	ENSMUSG00000037846	Rtkn2	B130039D23Rik|Mbf|Plekhk1	rhotekin 2	protein-coding	0.841225524093531	0.114611368484105	0.108044676914741	0.102957809084598	0.095737076197112	0.765126124646446	0.109495530731147	0.55531949811132	0.441701832985983	0.837425217603239	1
Merged-chr1-52655369-4	chr1	52655275	52655475	+	950.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_133829)	TTS (NM_133829)	24670.0	NM_001142647	227094.0	Mm.83541	NM_172654	ENSMUSG00000043015	Nemp2	5330401P04Rik|9830163O08|Tmem194b	nuclear envelope integral membrane protein 2	protein-coding	3.65486692456401	4.02936519762663	4.16273112766825	3.12842689565581	4.14296978931384	5.28533447198368	4.19404153490385	4.29008203808067	1.01853692988603	0.0320587074139197	0.248368728940298
Merged-chr14-57827527-3	chr14	57827387	57827587	+	638.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_026401, exon 2 of 2)	3' UTR (NM_026401, exon 2 of 2)	1248.0	NM_026401	67840.0	Mm.319530	NM_026401	ENSMUSG00000021967	Mrpl57	2610025P17Rik|AV005697|Mrp63	mitochondrial ribosomal protein L57	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-64615353-3	chr11	64615262	64615462	+	755.611084	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	-178688.0	NR_028445	654805.0	Mm.436132	NR_028445		F930015N05Rik	-	RIKEN cDNA F930015N05 gene	ncRNA	3.54405219500762	2.55829481961801	3.53870672627895	2.88913793275982	2.12814486501018	2.19964005937667	3.565191736916	3.00171290449056	-0.575144566119429	0.423299336807252	0.900460846988572
Merged-chr2-44275475-3	chr2	44275400	44275600	+	739.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301831, intron 12 of 14)	intron (NM_001301831, intron 12 of 14)	-210176.0	NR_040622	320872.0	Mm.445023	NR_040622	ENSMUSG00000085089	Arhgap15os	A430092G05Rik	Rho GTPase activating protein 15, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-98992701-4	chr15	98992606	98992806	+	987.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6741.0	NR_045991	75951.0	Mm.441657	NR_045991	ENSMUSG00000097587	4930578M01Rik	3010001K12Rik	RIKEN cDNA 4930578M01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-56279618-2	chr13	56279518	56279718	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16933.0	NM_019568	57266.0	Mm.30211	NM_019568	ENSMUSG00000021508	Cxcl14	1110031L23Rik|1200006I23Rik|AI414372|BMAC|BRAK|KS1|Kec|MIP-2g|MIP2gamma|NJAC|Scyb14|bolekine	chemokine (C-X-C motif) ligand 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-175695420-2	chr1	175695320	175695520	+	561.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	T-rich|Low_complexity|Low_complexity	-2788.0	NM_010098	13603.0	Mm.32744	NM_010098	ENSMUSG00000026525	Opn3	ERO|Ecpn	opsin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-87535814-4	chr6	87535729	87535929	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2570.0	NM_001286610	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-135871172-4	chr7	135871051	135871251	+	918.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-154772.0	NM_001081117	17345.0	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133468252-4	chr4	133468153	133468353	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-11880.0	NM_175307	100342.0	Mm.204656	NM_175307	ENSMUSG00000046694	Fam46b	4732473B16Rik|AU045678|AU046069	family with sequence similarity 46, member B	protein-coding	7.0589731329146	6.51902267678065	7.29741008594223	7.02876378353955	6.80201873457224	6.74726160980118	6.5766142444529	6.77335392011001	-0.294742219229926	0.126558870122045	0.55689342891744
Merged-chr13-38528408-4	chr13	38528325	38528525	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145367)	promoter-TSS (NM_145367)	59.0	NM_145367	105245.0	Mm.28622	NM_145367	ENSMUSG00000038991	Txndc5	AL022641|ERp46|PC-TRP	thioredoxin domain containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119372754-2	chr11	119372604	119372804	+	808.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_178743, intron 9 of 16)	B1_Mus2|SINE|Alu	17147.0	NM_178743	268512.0	Mm.31869	NM_178743	ENSMUSG00000039908	Slc26a11	F630021I08Rik	solute carrier family 26, member 11	protein-coding	0.341090838904036	0.102908112120904	0.0976460770802553	0.500486944681698	0.453567721914986	0.104096069297418	0.0988055401308316	0.704639318925924	0.70712504461997	0.730479309032182	1
Merged-chr4-6381092-2	chr4	6380992	6381192	+	666.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_016807, exon 4 of 9)	exon (NM_016807, exon 4 of 9)	15412.0	NM_001098227	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-4573874-3	chr2	4573787	4573987	+	954.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177844, intron 3 of 11)	intron (NM_001177844, intron 3 of 11)	14133.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-54795741-4	chr12	54795656	54795856	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026998)	promoter-TSS (NM_026998)	-94.0	NM_026998	72183.0	Mm.28240	NM_026998	ENSMUSG00000005656	Snx6	2010006G21Rik|2610032J07Rik|2810425K19Rik|AU018928|C85963	sorting nexin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-163747161-2	chr2	163747061	163747261	+	573.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001272052, intron 1 of 11)	intron (NM_001272052, intron 1 of 11)	3078.0	NM_007398	11486.0	Mm.388	NM_007398	ENSMUSG00000017697	Ada	-	adenosine deaminase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-110979555-7	chr5	110979387	110979587	+	810.904785	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001267622, intron 2 of 22)	CpG	-24657.0	NR_030482	735278.0		NR_030482	ENSMUSG00000076163	Mir701	Mirn701|mir-701|mmu-mir-701	microRNA 701	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-54705457-4	chr6	54705376	54705576	+	909.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23852.0	NM_001289740	68235.0	Mm.233860	NM_026629	ENSMUSG00000038065	Mturn	2410066E13Rik|AI448550|B230212L03Rik	maturin, neural progenitor differentiation regulator homolog (Xenopus)	protein-coding	2.33723414244427	2.8111955990576	1.65354213987997	1.97447810754829	2.74535538844156	2.11052631044641	2.44480790254446	2.25628579333186	0.327811028401023	0.702951200433937	0.998431161219273
Merged-chr18-12735150-2	chr18	12735050	12735250	+	735.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028341, intron 12 of 13)	intron (NM_028341, intron 12 of 13)	-6205.0	NM_181731	71132.0	Mm.179740	NM_027687	ENSMUSG00000024430	Cabyr	1700016C01Rik|4933421A18Rik|CBP86|FSP-2	calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-79050997-3	chr12	79050907	79051107	+	954.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181073, intron 4 of 28)	intron (NM_181073, intron 4 of 28)	21844.0	NM_181073	211945.0	Mm.478321	NM_181073	ENSMUSG00000060716	Plekhh1	AV308913|C77772|D630024D12Rik|mKIAA1200	pleckstrin homology domain containing, family H (with MyTH4 domain) member 1	protein-coding	1.14914653591338	0.119011504123872	0.111488985122282	0.445103981334451	0.0972927590707265	0.120697847067027	0.113154052018537	0.702584565182517	-1.45503359075661	0.489256697779593	1
Merged-chr16-10784206-2	chr16	10784106	10784306	+	696.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001271603, exon 2 of 2)	3' UTR (NM_001271603, exon 2 of 2)	1330.0	NM_009896	12703.0	Mm.130	NM_009896	ENSMUSG00000038037	Socs1	Cish1|Cish7|JAB|SOCS-1|SSI-1	suppressor of cytokine signaling 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-53852098-3	chr1	53852006	53852206	+	946.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001883, intron 20 of 28)	IMPB_01|Satellite|Satellite	2682.0	NR_106149	102465783.0		NR_106149	ENSMUSG00000098443	Mir7681	Gm27806|mmu-mir-7681	microRNA 7681	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-31918263-2	chr12	31918163	31918363	+	607.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163126, intron 19 of 22)	MTE2a|LTR|ERVL-MaLR	31982.0	NM_177993	73389.0	Mm.390461	NM_153198	ENSMUSG00000002996	Hbp1	1700058O05Rik|BE629963|C330012F01Rik|C86454	high mobility group box transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-98052211-2	chr7	98052160	98052360	+	685.666626	f0_c57.idr|f1_c57bl6.idr	exon (NM_001256082, exon 48 of 49)	exon (NM_001256082, exon 48 of 49)	56988.0	NM_001256082	17921.0	Mm.1403	NM_008663	ENSMUSG00000030761	Myo7a	Hdb|Myo7|USH1B|nmf371|polka|sh-1|sh1	myosin VIIA	protein-coding	1.11342934412982	2.27421103045205	2.27553408196668	2.28251366675418	0.900873261644878	1.66059807726814	0.954855644634291	1.17640297351059	-2.75188794735941	0.0267197939438696	0.219177817505844
Merged-chr11-80184854-1	chr11	80184754	80184954	+	862.0	f1_c57bl6.idr	intron (NM_028019, intron 1 of 4)	L1MB4|LINE|L1	982.0	NM_028019	71956.0	Mm.22985	NM_028019	ENSMUSG00000020707	Rnf135	0610037N03Rik|2410006N06Rik	ring finger protein 135	protein-coding	1.05174857589109	0.354862253630461	0.129785645022483	0.12372263830253	0.998480457551362	0.139318707615287	0.131510065065537	0.124785344868448	-0.335096508940836	0.873400172973122	1
Merged-chr5-142368633-2	chr5	142368533	142368733	+	923.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32864.0	NM_199068	17425.0	Mm.24214	NM_010812	ENSMUSG00000056493	Foxk1	A630048H08Rik|AI463295|Gm10868|Mnf	forkhead box K1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-103349565-4	chr14	103349460	103349660	+	999.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2760.0	NM_207215	105689.0	Mm.6478	NM_207215	ENSMUSG00000033004	Mycbp2	AU023734|AW107953|AW546647|C130061D10Rik|Pam|Phr1|R75243	MYC binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-122396126-3	chr7	122396014	122396214	+	811.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316672, intron 2 of 16)	intron (NM_001316672, intron 2 of 16)	106989.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-100155713-2	chr6	100155613	100155813	+	978.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	131645.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36070599-3	chr1	36070509	36070709	+	855.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015818, intron 1 of 1)	intron (NM_015818, intron 1 of 1)	2209.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127593668-3	chr10	127593555	127593755	+	886.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 9 of 88)	intron (NM_008512, intron 9 of 88)	27493.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	1.82728230306056	3.06820955743554	3.03935946815185	1.51964384047445	2.00282001761031	2.27786744842067	3.55547416227115	1.24825589183387	0.0450595423880117	0.963212807727695	0.998431161219273
Merged-chr11-46128737-3	chr11	46128650	46128850	+	861.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311209, intron 1 of 11)	intron (NM_001311209, intron 1 of 11)	846.0	NM_001311209	11492.0	Mm.89940	NM_009616	ENSMUSG00000011256	Adam19	AL024287|MADDAM|MTLNB|Mltnb	a disintegrin and metallopeptidase domain 19 (meltrin beta)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171827867-4	chr1	171827762	171827962	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A0|LTR|ERVL-MaLR	-11835.0	NM_001252472	12523.0	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-64949017-3	chr14	64948762	64948962	+	799.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177338, intron 1 of 9)	intron (NM_177338, intron 1 of 9)	995.0	NM_177338	219150.0	Mm.344074	NM_177338	ENSMUSG00000021972	Hmbox1	AI451877|AI604847|F830020C16Rik	homeobox containing 1	protein-coding	1.0856836796477	1.67551201411585	1.08173881978644	0.904420665755314	0.537965300687167	0.573411099470965	0.56206125152249	0.910018786734398	-3.11123681619044	0.0576672665795658	0.355313252702313
Merged-chr16-91613920-2	chr16	91613820	91614020	+	611.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_138664)	TTS (NM_138664)	5079.0	NM_001099738	246738.0	Mm.101927	NM_138664	ENSMUSG00000039763	Dnajc28	BC020175|ORF28	DnaJ heat shock protein family (Hsp40) member C28	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-125613853-4	chr7	125613765	125613965	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021887, intron 1 of 8)	L1MA9|LINE|L1	10436.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-130960291-2	chr4	130960191	130960391	+	985.916626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15906.0	NM_010769	17180.0	Mm.271796	NM_010769	ENSMUSG00000040533	Matn1	CMP|Crtm|Mat1|matrilin-1	matrilin 1, cartilage matrix protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180822480-4	chr1	180822360	180822560	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8855.0	NM_008210	15078.0	Mm.138832	NM_008210	ENSMUSG00000060743	H3f3a	EyeLinc14|H3.3A	H3 histone, family 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-7874373-1	chr17	7874273	7874473	+	585.0	f0_balb.idr	Intergenic	RLTR20A4|LTR|ERVK	-51627.0	NM_145968	72536.0	Mm.119680	NM_145968	ENSMUSG00000033450	Tagap	2610315E15Rik|TRD|Tcd-1|Tcd1|Tcd1a|tcs-1|tcs1	T cell activation Rho GTPase activating protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6401607-4	chr19	6401520	6401720	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011242, intron 1 of 16)	CpG	1037.0	NM_011242	19395.0	Mm.77017	NM_011242	ENSMUSG00000032946	Rasgrp2	CDC25L|Caldaggef1	RAS, guanyl releasing protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-4598112-2	chr2	4598012	4598212	+	953.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177844, intron 7 of 11)	(TC)n|Simple_repeat|Simple_repeat	38358.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-65729053-2	chr11	65728953	65729153	+	616.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001316368, intron 3 of 10)	intron (NM_001316368, intron 3 of 10)	5779.0	NR_030417	791070.0		NR_030417	ENSMUSG00000076460	Mir744	Mirn744|mir-744|mmu-mir-744	microRNA 744	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107738638-2	chr9	107738538	107738738	+	892.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28163.0	NM_011349	20350.0	Mm.12903	NM_011349	ENSMUSG00000034684	Sema3f	Sema4|Semak	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-67359269-4	chr14	67359167	67359367	+	955.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045961, intron 3 of 5)	intron (NR_045961, intron 3 of 5)	38475.0	NR_045961	73977.0	Mm.414915	NR_045961	ENSMUSG00000093472	4930438E09Rik	-	RIKEN cDNA 4930438E09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10022033-2	chr19	10021896	10022096	+	815.5	f0_balb.idr|f1_c57bl6.idr	intron (NR_153790, intron 1 of 10)	intron (NR_153790, intron 1 of 10)	3802.0	NM_001347430	74760.0	Mm.281969	NM_144538	ENSMUSG00000024663	Rab3il1	1200014K04Rik|AI115013|C76746|Rab3ail1	RAB3A interacting protein (rabin3)-like 1	protein-coding	1.30644865037036	0.559766858932718	0.33887270208423	1.01895947761161	0.745957304945976	0.349405222558306	0.340777282402024	0.333351459611158	-2.40814640969692	0.19857712404875	1
Merged-chr13-49364883-1	chr13	49364783	49364983	+	636.0	f0_balb.idr	intron (NM_001039179, intron 1 of 6)	intron (NM_001039179, intron 1 of 6)	23334.0	NM_001039180	76895.0	Mm.197387	NM_029791	ENSMUSG00000037933	Bicd2	-	BICD cargo adaptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-52386162-3	chr5	52386039	52386239	+	721.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001256059, intron 10 of 11)	intron (NM_001256059, intron 10 of 11)	22335.0	NM_011435	20657.0	Mm.2407	NM_011435	ENSMUSG00000072941	Sod3	AI314465|EC-SOD	superoxide dismutase 3, extracellular	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-149892487-3	chr1	149892395	149892595	+	776.266663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008869, intron 5 of 17)	intron (NM_008869, intron 5 of 17)	29944.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129455529-4	chr4	129455432	129455632	+	764.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6147.0	NM_133889	100383.0	Mm.17918	NM_133889	ENSMUSG00000040859	Bsdc1	1110063F24Rik|AW011758	BSD domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-170131220-4	chr2	170131162	170131362	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033299)	promoter-TSS (NM_001033299)	-42.0	NM_001033299	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-102040309-4	chr11	102040207	102040407	+	960.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1204.0	NM_001160711	52685.0	Mm.266885	NM_027987	ENSMUSG00000017309	Cd300lg	2310016B05Rik|Clm9|D11Ertd736e	CD300 molecule like family member G	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-45244078-5	chr9	45243992	45244192	+	970.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198971, intron 3 of 4)	intron (NM_001198971, intron 3 of 4)	22615.0	NR_106054	102466803.0		NR_106054	ENSMUSG00000098361	Mir7086	Gm27643|mmu-mir-7086	microRNA 7086	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-77983325-2	chr11	77983225	77983425	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_174852, exon 1 of 15)	exon (NM_174852, exon 1 of 15)	509.0	NM_174852	268448.0	Mm.274329	NM_174852	ENSMUSG00000037791	Phf12	2410142K10Rik|F630045O13|PF1|mKIAA1523	PHD finger protein 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-59154257-2	chr2	59154157	59154357	+	590.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001362394, intron 1 of 13)	intron (NM_001362394, intron 1 of 13)	6426.0	NM_001362393	227933.0	Mm.330234	NM_177650	ENSMUSG00000036641	Ccdc148	5830402J09|Gm38473	coiled-coil domain containing 148	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116616974-4	chr11	116616876	116617076	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172572, intron 1 of 18)	intron (NM_172572, intron 1 of 18)	7276.0	NM_001167680	217344.0	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-38404387-3	chr16	38404278	38404478	+	807.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134102, intron 8 of 10)	intron (NM_134102, intron 8 of 10)	28767.0	NM_134102	85031.0	Mm.279805	NM_134102	ENSMUSG00000002847	Pla1a	AA986889|Ps-pla1|Pspla1	phospholipase A1 member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36074528-2	chr1	36074428	36074628	+	740.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_015818, intron 1 of 1)	intron (NM_015818, intron 1 of 1)	6128.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-172473210-2	chr2	172473110	172473310	+	663.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029608, intron 1 of 1)	intron (NM_029608, intron 1 of 1)	656.0	NM_029608	76426.0	Mm.46148	NM_029608	ENSMUSG00000027505	Fam209	1700029J11Rik	family with sequence similarity 209	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10202922-2	chr19	10202822	10203022	+	776.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271615, intron 1 of 1)	ID4_|SINE|ID	1021.0	NM_001271615	14156.0	Mm.2952	NM_007999	ENSMUSG00000024742	Fen1	AW538437|FEN-1	flap structure specific endonuclease 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-79135168-3	chr12	79135078	79135278	+	756.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009705, intron 2 of 7)	intron (NM_009705, intron 2 of 7)	4390.0	NM_009705	11847.0	Mm.3506	NM_009705	ENSMUSG00000021125	Arg2	AII|AU022422	arginase type II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123447630-2	chr5	123447530	123447730	+	591.25	f1_balb.idr|f1_c57bl6.idr	TTS (NM_177582)	TTS (NM_177582)	34471.0	NM_029594	76399.0	Mm.75049	NM_029594	ENSMUSG00000029437	Il31	1700013B14Rik	interleukin 31	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90504206-4	chr2	90504095	90504295	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	-25021.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-72764150-3	chr5	72764079	72764279	+	954.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001113460, exon 14 of 19)	exon (NM_001113460, exon 14 of 19)	-11402.0	NM_001122754	22165.0	Mm.3264	NM_013698	ENSMUSG00000054892	Txk	A130089B16Rik|Btkl|PTK-RL-18|PTK4|Rlk	TXK tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139387993-4	chr5	139387877	139388077	+	935.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030258, intron 1 of 1)	intron (NM_030258, intron 1 of 1)	-1927.0	NM_001038703	80290.0	Mm.270003	NM_030258	ENSMUSG00000044197	Gpr146	BC003323|D830046C22Rik|PGR8	G protein-coupled receptor 146	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-11547812-3	chr2	11547727	11547927	+	744.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177758, intron 1 of 14)	intron (NM_001177758, intron 1 of 14)	6102.0	NM_001177758	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-148691080-1	chr4	148690980	148691180	+	568.0	f1_balb.idr	Intergenic	B4A|SINE|B4	47763.0	NM_001085505	230909.0	Mm.332067	NM_001085505	ENSMUSG00000070577	Gm572	b2b1167Clo	predicted gene 572	protein-coding	0.832232851364183	0.898656236401721	2.0688562971327	1.81089180757797	0.836608784546909	1.96633926318454	1.99338425071139	1.09626172763979	0.153001886159748	0.911044404131429	0.998431161219273
Merged-chr7-90370448-4	chr7	90370376	90370576	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040085, intron 4 of 18)	intron (NM_001040085, intron 4 of 18)	-16505.0	NM_001040087	83671.0	Mm.26751	NM_031394	ENSMUSG00000030616	Sytl2	AI266830|Slp2|mKIAA1597	synaptotagmin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-134747717-4	chr1	134747614	134747814	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009307, exon 10 of 10)	3' UTR (NM_009307, exon 10 of 10)	38414.0	NM_001355726	20980.0	Mm.5102	NM_009307	ENSMUSG00000026452	Syt2	IP4BP|R74640|mKIAA4194|sytII	synaptotagmin II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-20040350-4	chr10	20040258	20040458	+	871.724976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008580, intron 7 of 29)	intron (NM_008580, intron 7 of 29)	105832.0	NM_008580	26408.0	Mm.6595	NM_008580	ENSMUSG00000071369	Map3k5	7420452D20Rik|ASK|ASK1|MAPKKK5|Mekk5	mitogen-activated protein kinase kinase kinase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-92672214-2	chr16	92672114	92672314	+	840.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111022, intron 4 of 6)	MLT1C|LTR|ERVL-MaLR	25115.0	NM_001111023	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-135773952-4	chr7	135773849	135774049	+	948.0166630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57570.0	NM_001081117	17345.0	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-44069391-4	chr19	44069286	44069486	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001164359, exon 2 of 12)	5' UTR (NM_001164359, exon 2 of 12)	300.0	NM_145502	226144.0	Mm.279865	NM_145502	ENSMUSG00000025198	Erlin1	2810439N09Rik|C80197|Keo4|Spfh1	ER lipid raft associated 1	protein-coding	3.75776529817304	4.84342869280914	3.27076812995867	4.69762199525872	4.31669817521369	4.43156436142899	4.29259651812419	4.55987933744608	0.149227414460847	0.743799417857064	0.998431161219273
Merged-chr6-48473774-2	chr6	48473674	48473874	+	577.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_173428, exon 51 of 103)	exon (NM_173428, exon 51 of 103)	25545.0	NM_173428	243369.0	Mm.25039	NM_173428	ENSMUSG00000029797	Sspo	C79529|Scospondin	SCO-spondin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-47349923-4	chr4	47349811	47350011	+	956.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3311.0	NM_001312868	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-145691657-3	chr3	145691552	145691752	+	952.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3b|LINE|CR1	-41667.0	NM_010516	16007.0	Mm.1231	NM_010516	ENSMUSG00000028195	Cyr61	AI325051|CCN1|Igfbp10	cysteine rich protein 61	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-98094957-3	chr1	98094845	98095045	+	669.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357127, intron 1 of 25)	intron (NM_001357127, intron 1 of 25)	687.0	NM_013626	18484.0	Mm.5121	NM_013626	ENSMUSG00000026335	Pam	PHM	peptidylglycine alpha-amidating monooxygenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19698241-4	chr7	19698127	19698327	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009696, exon 2 of 4)	exon (NM_009696, exon 2 of 4)	171.0	NM_001305819	11816.0	Mm.305152	NM_009696	ENSMUSG00000002985	Apoe	AI255918|Apo-E	apolipoprotein E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-98284682-2	chr12	98284582	98284782	+	585.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16047.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-63999844-4	chr7	63999730	63999930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60915.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-30284200-3	chr16	30284118	30284318	+	693.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028973)	promoter-TSS (NM_028973)	-964.0	NM_028973	74488.0	Mm.290677	NM_028973	ENSMUSG00000052316	Lrrc15	5430427N11Rik|LIB	leucine rich repeat containing 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-132747223-2	chr3	132747123	132747323	+	899.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163455, intron 20 of 25)	intron (NM_001163455, intron 20 of 25)	63079.0	NM_001163455	271981.0	Mm.257864	NM_173032	ENSMUSG00000028030	Tbck	1700120J03Rik|9430001M19|A630047E20Rik|C030007I09Rik|Tbckl	TBC1 domain containing kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-13358801-2	chr14	13358701	13358901	+	823.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028052, intron 2 of 5)	intron (NM_028052, intron 2 of 5)	74021.0	NM_028052	72003.0	Mm.317515	NM_028052	ENSMUSG00000056296	Synpr	1500003F20Rik|SPO	synaptoporin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-28479370-3	chr2	28479276	28479476	+	572.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17B|LTR|ERVK	11310.0	NM_001166031	118451.0	Mm.294951	NM_080452	ENSMUSG00000035772	Mrps2	1500019M10Rik	mitochondrial ribosomal protein S2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-78864602-4	chr7	78864511	78864711	+	893.68335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17400.0	NM_029585	76375.0	Mm.250541	NM_029585	ENSMUSG00000030610	Det1	2610034H20Rik	de-etiolated homolog 1 (Arabidopsis)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46520258-2	chr19	46520158	46520358	+	814.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18610.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-85652281-3	chr11	85652183	85652383	+	585.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138681, intron 24 of 25)	intron (NM_138681, intron 24 of 25)	67461.0	NR_045875	71489.0	Mm.442482	NR_045875	ENSMUSG00000086199	Bcas3os1	8430403D17Rik	breast carcinoma amplified sequence 3, opposite strand 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-140811203-4	chr6	140811116	140811316	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	184331.0	NM_001309436	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53060202-2	chr4	53060102	53060302	+	774.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 33 of 49)	intron (NM_013454, intron 33 of 49)	48322.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-60763091-4	chr18	60763012	60763212	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-11484.0	NM_020600	20044.0	Mm.43778	NM_020600	ENSMUSG00000024608	Rps14	2600014J02Rik|AL023078	ribosomal protein S14	protein-coding	3.92061529191629	3.31560711574622	3.4847354854276	3.38869202691854	3.46300067296668	3.22685247409833	3.66883230236965	3.6312514260576	-0.0732937594605423	0.889062792967533	0.998431161219273
Merged-chr10-62502302-3	chr10	62502271	62502471	+	911.351868	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358965, intron 2 of 3)	intron (NM_001358965, intron 2 of 3)	5386.0	NM_011157	19073.0	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-58126770-4	chr11	58126616	58126816	+	919.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166669, intron 24 of 27)	intron (NM_001166669, intron 24 of 27)	22487.0	NM_001356477	69125.0	Mm.28910	NM_026949	ENSMUSG00000020515	Cnot8	1500015I04Rik|1810022F04Rik|AA536816|AU015770|AU043059	CCR4-NOT transcription complex, subunit 8	protein-coding	4.18659460541331	4.86131985997747	3.97042267997595	2.75908189162452	5.27894513179957	4.80224636793821	5.21895193547831	4.85011811689739	1.15775568176209	0.0085389301242738	0.0972627376244022
Merged-chr9-44420324-4	chr9	44420222	44420422	+	741.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger5|DNA|TcMar-Tigger	-2253.0	NM_201372	382073.0	Mm.259573	NM_201372	ENSMUSG00000043923	Ccdc84	D630044F24Rik|Gm1114	coiled-coil domain containing 84	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-9718734-2	chr3	9718634	9718834	+	565.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_053182, intron 2 of 7)	B3A|SINE|B2	-108649.0	NM_133218	170753.0	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-52859238-4	chr2	52859137	52859337	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	1369.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-109518179-2	chr7	109518079	109518279	+	870.8333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-1016.0	NM_011975	26451.0	Mm.305750	NM_011975	ENSMUSG00000046364	Rpl27a	L27'|L27A|L29	ribosomal protein L27A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-12326351-1	chr15	12326251	12326451	+	540.0	f1_balb.idr	intron (NM_025673, intron 1 of 3)	intron (NM_025673, intron 1 of 3)	4855.0	NM_025673	66629.0	Mm.157655	NM_025673	ENSMUSG00000022200	Golph3	4733401N08Rik|5730410D03Rik|AW413496	golgi phosphoprotein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-127008702-4	chr2	127008589	127008789	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175550)	promoter-TSS (NM_175550)	-22.0	NM_175550	108011.0	Mm.134045	NM_175550	ENSMUSG00000001998	Ap4e1	2310033A20Rik|9930028M04Rik|AV087807	adaptor-related protein complex AP-4, epsilon 1	protein-coding	4.26253647921849	4.73933867381573	3.79709505398404	4.47608929209403	4.25002450249542	4.45744802968405	3.82771110147746	5.21308290857902	0.231592300474882	0.598960810899342	0.972303230574462
Merged-chr15-88860974-2	chr15	88860874	88861074	+	846.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1220.0	NM_145478	223775.0	Mm.400129	NM_145478	ENSMUSG00000035828	Pim3	BC026639|Kid1	proviral integration site 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-81641947-2	chr13	81641847	81642047	+	651.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8803.0	NM_054053	110789.0	Mm.288694	NM_054053	ENSMUSG00000069170	Adgrv1	Frings|Gpr98|Mass1|Mgr1|VLGR1	adhesion G protein-coupled receptor V1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-51553225-4	chr3	51553067	51553267	+	979.7666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080793, intron 1 of 7)	intron (NM_080793, intron 1 of 7)	-6590.0	NR_033624	100039684.0	Mm.387178	NR_033624		5031434O11Rik	AI481280|Gm2370	RIKEN cDNA 5031434O11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-99212669-2	chr10	99212569	99212769	+	657.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50562.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-99900329-2	chr12	99900229	99900429	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028354, intron 5 of 15)	URR1B|DNA|hAT-Charlie	15814.0	NM_028354	104884.0	Mm.312323	NM_028354	ENSMUSG00000021177	Tdp1	2810481F14Rik|4921509N21Rik|AI838772|AW493413|E430034L06Rik|MLZ-501|SCAN1	tyrosyl-DNA phosphodiesterase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80034984-2	chr10	80034884	80035084	+	990.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_025554)	TTS (NM_025554)	4675.0	NM_025554	66420.0	Mm.18579	NM_025554	ENSMUSG00000004667	Polr2e	2410021N14Rik|25kDa|AW208866|RPB5|XAP4	polymerase (RNA) II (DNA directed) polypeptide E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-43615885-2	chr13	43615785	43615985	+	758.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183204)	promoter-TSS (NM_183204)	88.0	NM_183204	328234.0	Mm.40588	NM_183204	ENSMUSG00000044164	Rnf182	C630023L15Rik	ring finger protein 182	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118768783-1	chr9	118768683	118768883	+	1000.0	f1_c57bl6.idr	intron (NM_001113514, intron 1 of 13)	intron (NM_001113514, intron 1 of 13)	57091.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-37472481-4	chr1	37472373	37472573	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173870, intron 5 of 15)	L1M3b|LINE|L1	16132.0	NR_024017	77633.0	Mm.483177	NR_024017	ENSMUSG00000103948	4930594C11Rik	-	G1 to S phase transition pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-82864054-2	chr10	82863954	82864154	+	644.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001042513, intron 2 of 14)	intron (NM_001042513, intron 2 of 14)	-2572.0	NM_025499	66341.0	Mm.443284	NM_025499	ENSMUSG00000109864	Eid3	1700027M21Rik|NS4EB	EP300 interacting inhibitor of differentiation 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-30364820-3	chr16	30364732	30364932	+	783.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001128096, intron 3 of 33)	intron (NM_001128096, intron 3 of 33)	23698.0	NM_001128094	224088.0	Mm.8924	NM_001128094	ENSMUSG00000022533	Atp13a3	AU022875|Gm1745|Gm541|Gm542	ATPase type 13A3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111426234-4	chr12	111426106	111426306	+	968.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_028807, exon 8 of 13)	exon (NM_028807, exon 8 of 13)	8761.0	NM_001289488	74190.0	Mm.248640	NM_028807	ENSMUSG00000021280	Exoc3l4	1200009I06Rik|1600013K19Rik	exocyst complex component 3-like 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-57285170-4	chr17	57285061	57285261	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163816, intron 1 of 25)	intron (NM_001163816, intron 1 of 25)	6061.0	NM_001163815	22324.0	Mm.248172	NM_011691	ENSMUSG00000034116	Vav1	Vav|vav-T	vav 1 oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-151353125-3	chr1	151353032	151353232	+	782.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039511, intron 5 of 7)	B2_Mm2|SINE|B2	8634.0	NM_001039511	117198.0	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-76522176-4	chr5	76522057	76522257	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7150.0	NM_001359372	69940.0	Mm.403233	NM_027270	ENSMUSG00000036435	Exoc1	2810407P21Rik|A730011E05Rik|SEC3|Sec3l1|Sec3p	exocyst complex component 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-49933857-1	chr17	49933757	49933957	+	798.0	f1_balb.idr	Intergenic	Intergenic	256640.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	0.415912945139103	0.548484466702815	0.016680314100606	0.0137469381926089	0.424697199105958	0.021393715997138	0.0175237429378065	0.0142574833158478	-1.21941487624627	0.594158280372554	1
Merged-chr5-64351811-2	chr5	64351711	64351911	+	732.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001310611)	TTS (NM_001310611)	116131.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-60881796-2	chr2	60881696	60881896	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001141931)	promoter-TSS (NM_001141931)	-358.0	NM_001141931	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4370751-2	chr16	4370651	4370851	+	934.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009624, intron 2 of 10)	intron (NM_009624, intron 2 of 10)	49747.0	NM_001291910	11515.0	Mm.439750	NM_009624	ENSMUSG00000005580	Adcy9	AC9|ACtp10|AW125421|D16Wsu65e|mKIAA0520	adenylate cyclase 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-72330530-4	chr5	72330452	72330652	+	888.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122756, intron 15 of 21)	intron (NM_001122756, intron 15 of 21)	127209.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72835336-1	chr6	72835236	72835436	+	1000.0	f0_balb.idr	Intergenic	Intergenic	-46291.0	NM_009332	21415.0	Mm.440067	NM_009332	ENSMUSG00000055799	Tcf7l1	Tcf-3|Tcf3|bHLHb21	transcription factor 7 like 1 (T cell specific, HMG box)	protein-coding	1.07053573722724	0.920749725761715	0.887074947157133	1.72575403617036	1.89011893271904	1.24295004158128	1.9553020812125	3.37721338189944	3.03352583822201	0.0104940932665807	0.112686274772465
Merged-chr3-95493927-3	chr3	95493782	95493982	+	622.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037737, intron 20 of 21)	intron (NM_001037737, intron 20 of 21)	-5328.0	NM_007802	13038.0	Mm.272085	NM_007802	ENSMUSG00000028111	Ctsk	AI323530|MMS10-Q|Ms10q|catK	cathepsin K	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-59225592-3	chr3	59225484	59225684	+	770.694458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357010, intron 1 of 3)	intron (NM_001357010, intron 1 of 3)	-14702.0	NM_028808	74191.0	Mm.90067	NM_028808	ENSMUSG00000036362	P2ry13	2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174	purinergic receptor P2Y, G-protein coupled 13	protein-coding	-2.18138529563533	-2.15523716995652	-2.1631445789866	-2.16963996020037	-2.05513010215571	-2.15352360143315	-2.16135451490766	-2.16847729006863	0.759018020146679	0.829933115115583	1
Merged-chr7-44374468-4	chr7	44374357	44374557	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_027049, exon 2 of 6)	5' UTR (NM_027049, exon 2 of 6)	573.0	NM_027049	69349.0	Mm.358922	NM_027049	ENSMUSG00000008028	1700008O03Rik	-	RIKEN cDNA 1700008O03 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80827862-1	chr7	80827762	80827962	+	657.0	f0_balb.idr	Intergenic	Intergenic	-24531.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-61613806-2	chr11	61613706	61613906	+	847.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-34119.0	NM_001252189	13855.0	Mm.139695	NM_010148	ENSMUSG00000001036	Epn2	9530051D10Rik|AA536924|Ibp2	epsin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90783241-2	chr2	90783141	90783341	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356533)	promoter-TSS (NM_001356533)	3.0	NM_001356533	271813.0	Mm.61146	NM_178755	ENSMUSG00000040812	Agbl2	4930524K04|A430081C19Rik|CCP2	ATP/GTP binding protein-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-21974324-4	chr13	21974227	21974427	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6854.0	NM_001162928	195236.0	Mm.204664	NM_001162928	ENSMUSG00000016982	Pom121l2	Gm24	POM121 membrane glycoprotein-like 2 (rat)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5837696-4	chr19	5837594	5837794	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_131212, exon 1 of 1)	non-coding (NR_131212, exon 1 of 1)	7784.0	NR_131212	66961.0	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-46541878-2	chr4	46541778	46541978	+	578.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164804, intron 10 of 11)	intron (NM_001164804, intron 10 of 11)	-5737.0	NM_029077	74735.0	Mm.240252	NM_029077	ENSMUSG00000039853	Trim14	5830400N10Rik|pub	tripartite motif-containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-100416300-4	chr5	100416184	100416384	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026969)	promoter-TSS (NM_026969)	-50.0	NM_001359332	69162.0	Mm.18634	NM_026969	ENSMUSG00000035325	Sec31a	1810024J13Rik|ABP125|ABP130|AU042160|HSPC275|Sec31l1	Sec31 homolog A (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-75191518-2	chr8	75191418	75191618	+	562.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22426.0	NM_029182	75141.0	Mm.179267	NM_029182	ENSMUSG00000034472	Rasd2	4930526B11Rik|AU045414|Rhes|TEM-2|TEM2	RASD family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80317866-2	chr10	80317766	80317966	+	636.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_025521)	TTS (NM_025521)	2682.0	NM_025521	66374.0	Mm.383824	NM_025521	ENSMUSG00000020133	2310011J03Rik	AI452186|AW545358	RIKEN cDNA 2310011J03 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-88513835-2	chr15	88513735	88513935	+	689.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-86467.0	NM_027306	70073.0	Mm.45306	NM_027306	ENSMUSG00000054117	Zdhhc25	1700030J15Rik	zinc finger, DHHC domain containing 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-46251755-4	chr2	46251652	46251852	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur1|LINE|L1	555147.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-107566627-1	chr1	107566527	107566727	+	596.0	f0_balb.idr	Intergenic	Intergenic	-23379.0	NM_011459	20725.0	Mm.83909	NM_011459	ENSMUSG00000026315	Serpinb8	CAP-2|CAP2|NK10|Spi8|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-37043361-4	chr11	37043273	37043473	+	988.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-99132.0	NM_011856	23964.0	Mm.439889	NM_011856	ENSMUSG00000049336	Tenm2	Odz2|Odz3|Ten-2|Ten-m2	teneurin transmembrane protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-78160155-4	chr10	78160055	78160255	+	974.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9613.0	NM_138601	28295.0	Mm.268691	NM_138601	ENSMUSG00000053329	D10Jhu81e	C21orf33|ES1	DNA segment, Chr 10, Johns Hopkins University 81 expressed	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-137430549-1	chr7	137430449	137430649	+	541.0	f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-7024.0	NM_001348093	30926.0	Mm.267692	NM_023140	ENSMUSG00000031068	Glrx3	PICOT|Txnl2	glutaredoxin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-72528230-1	chr9	72528130	72528330	+	792.666687	f0_balb.idr	intron (NR_045735, intron 1 of 2)	MTC|LTR|ERVL-MaLR	3628.0	NR_045735	75115.0	Mm.280755	NR_045735	ENSMUSG00000096986	4930509E16Rik	-	RIKEN cDNA 4930509E16 gene	ncRNA	2.26942497332101	2.24385561946862	1.382022398456	2.55533914078801	2.29219722539858	4.55876922515283	3.28975793146347	3.01130953448408	2.36341470882252	0.00315532808820766	0.0470086420558554
Merged-chr4-120107600-1	chr4	120107500	120107700	+	561.0	f1_balb.idr	intron (NM_010657, intron 5 of 8)	intron (NM_010657, intron 5 of 8)	-53606.0	NM_007902	13615.0	Mm.284855	NM_007902	ENSMUSG00000028635	Edn2	ET-2|PPET2|VIC	endothelin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-9506734-2	chr18	9506635	9506835	+	654.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56581.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	-0.170060193016043	0.315335269908967	-0.161104957855382	-0.0077896362141921	0.376375164703175	0.0326931215110913	-0.160138936738764	-0.163889868984735	0.283209887294287	0.899784537090288	1
Merged-chr15-89429955-4	chr15	89429854	89430054	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_004843)	promoter-TSS (NR_004843)	-27.0	NR_037153	12651.0	Mm.485045	NM_007692	ENSMUSG00000022617	Chkb	Chetk|Chkl|Ck|Ck/Ek|Ck/Ek-beta|Ckb|Ckekb|Ek	choline kinase beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105859605-2	chr8	105859505	105859705	+	835.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357229)	promoter-TSS (NM_001357229)	-928.0	NM_026532	68051.0	Mm.455474	NM_026532	ENSMUSG00000008450	Nutf2	2700067I02Rik|AI115459|AI413596|AW546000|Ntf2|Ntf3|PP15	nuclear transport factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-79441824-11	chr15	79441675	79441875	+	901.0985109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289899)	promoter-TSS (NM_001289899)	43.0	NM_001289899	27373.0	Mm.30199	NM_013767	ENSMUSG00000022433	Csnk1e	AI426939|AI551861|AW457082|CK1epsilon|CKIe|KC1epsilon|tau	casein kinase 1, epsilon	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-66311461-3	chr7	66311358	66311558	+	750.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146191, intron 6 of 33)	intron (NM_146191, intron 6 of 33)	70266.0	NR_106024	102465640.0		NR_106024	ENSMUSG00000098353	Mir7057	Gm27550|mmu-mir-7057	microRNA 7057	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-107594576-4	chr7	107594466	107594666	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008905)	promoter-TSS (NM_008905)	-485.0	NM_008905	19024.0	Mm.2817	NM_008905	ENSMUSG00000036528	Ppfibp2	Cclp1	PTPRF interacting protein, binding protein 2 (liprin beta 2)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-97373973-4	chr15	97373868	97374068	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_172293, exon 5 of 6)	5' UTR (NM_172293, exon 5 of 6)	-126681.0	NM_001164602	105827.0	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-91788694-2	chr12	91788594	91788794	+	954.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-2258.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-127790529-4	chr3	127790442	127790642	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356430)	promoter-TSS (NM_001356430)	-115.0	NM_001356430	211550.0	Mm.31852	NM_145133	ENSMUSG00000046688	Tifa	T2bp	TRAF-interacting protein with forkhead-associated domain	protein-coding	4.88835434663317	5.41753515032199	6.05312123761137	5.09178752469359	5.75085178894902	5.86081398660655	5.22419079972095	5.88531463492192	0.311534796957666	0.319258517909451	0.821951596143819
Merged-chr10-127525003-2	chr10	127524903	127525103	+	774.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_183297)	TTS (NM_183297)	-2559.0	NM_028230	108037.0	Mm.29890	NM_028230	ENSMUSG00000025403	Shmt2	2700043D08Rik|AA408223|AA986903|SHMT	serine hydroxymethyltransferase 2 (mitochondrial)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-88275654-4	chr4	88275567	88275767	+	842.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081184, intron 16 of 43)	intron (NM_001081184, intron 16 of 43)	153627.0	NR_030478	735282.0		NR_030478	ENSMUSG00000070077	Mir491	Mirn491|mir-491|mmu-mir-491	microRNA 491	ncRNA	2.37054734005472	2.53250456260673	3.25060020010172	2.09347098153129	2.14861673211905	2.40701736333694	2.4665800349265	3.11374224011564	-0.102226027595971	0.89673709468509	0.998431161219273
Merged-chr10-77268658-2	chr10	77268558	77268758	+	930.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_030262, exon 9 of 9)	exon (NM_030262, exon 9 of 9)	9358.0	NM_030262	80294.0	Mm.203556	NM_030262	ENSMUSG00000020260	Pofut2	2310011G23Rik|AI256847|BC003494|C21orf80|FUT13	protein O-fucosyltransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-113488437-2	chr13	113488337	113488537	+	587.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045501, intron 1 of 6)	RMER19C|LTR|ERVK	14407.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-39940628-2	chr16	39940528	39940728	+	591.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus4|LINE|L1	-43736.0	NM_001361282	268890.0	Mm.310524	NM_175548	ENSMUSG00000061080	Lsamp	5430428I19|AW046674|B130007O04Rik|D930023J12Rik|Gm29907|Lam|Lamp	limbic system-associated membrane protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-117946671-1	chr5	117946571	117946771	+	727.0	f1_balb.idr	intron (NM_008712, intron 24 of 27)	(TAGA)n|Simple_repeat|Simple_repeat	-30099.0	NM_145564	231670.0	Mm.21912	NM_145564	ENSMUSG00000032898	Fbxo21	2810425J22Rik|AU016673	F-box protein 21	protein-coding	1.2191987929711	1.98986874613925	1.31538349394873	1.66284575431999	1.84522199061028	0.943006310680272	0.926906821008789	1.43195041844682	-0.765049762640752	0.547377667075226	0.957826773868235
Merged-chr5-86071769-4	chr5	86071665	86071865	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019992)	promoter-TSS (NM_019992)	19.0	NM_001310639	56792.0	Mm.131237	NM_019992	ENSMUSG00000029254	Stap1	AI586015|Brdg1|STAP-1	signal transducing adaptor family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-77839061-4	chr15	77838956	77839156	+	978.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022410, intron 1 of 40)	intron (NM_022410, intron 1 of 40)	3119.0	NM_022410	17886.0	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-103967350-2	chr11	103967247	103967447	+	986.0	f0_balb.idr|f0_c57.idr	5' UTR (NM_007477, exon 1 of 5)	5' UTR (NM_007477, exon 1 of 5)	476.0	NM_007477	11841.0	Mm.5061	NM_007477	ENSMUSG00000062421	Arf2	-	ADP-ribosylation factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-99381161-4	chr5	99381057	99381257	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 2 of 3)	RMER1B|Other|Other	-128230.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-116644481-3	chr4	116644355	116644555	+	835.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021473, intron 2 of 8)	B3A|SINE|B2	7219.0	NM_021473	58810.0	Mm.30085	NM_021473	ENSMUSG00000028692	Akr1a1	2610201A18Rik|Akr1a4	aldo-keto reductase family 1, member A1 (aldehyde reductase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101385501-4	chr7	101385403	101385603	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027180)	promoter-TSS (NM_027180)	-23.0	NM_027180	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-85871852-4	chr10	85871749	85871949	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133993)	promoter-TSS (NM_133993)	18.0	NM_133993	103136.0	Mm.18834	NM_133993	ENSMUSG00000001785	Pwp1	2310058A11Rik|2610205J09Rik|AI098170|AL022879|AV083409|AW550690	PWP1 homolog, endonuclein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64208147-2	chr5	64208047	64208247	+	681.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019636, intron 2 of 19)	intron (NM_019636, intron 2 of 19)	-22210.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139388726-2	chr5	139388626	139388826	+	918.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030258, intron 1 of 1)	intron (NM_030258, intron 1 of 1)	-1178.0	NM_001038703	80290.0	Mm.270003	NM_030258	ENSMUSG00000044197	Gpr146	BC003323|D830046C22Rik|PGR8	G protein-coupled receptor 146	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43671015-1	chr4	43670915	43671115	+	652.0	f1_c57bl6.idr	intron (NM_001355718, intron 1 of 11)	intron (NM_001355718, intron 1 of 11)	2044.0	NM_001355718	242409.0	Mm.171489	NM_001085508	ENSMUSG00000078716	Tmem8b	4930500O05Rik	transmembrane protein 8B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-91206749-2	chr10	91206649	91206849	+	835.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	13870.0	NR_151510	102633753.0	Mm.416936	NR_151510		4930534H03Rik	-	RIKEN cDNA 4930534H03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-17364963-2	chr19	17364859	17365059	+	629.333374	f0_balb.idr|f1_balb.idr	intron (NM_010265, intron 1 of 2)	intron (NM_010265, intron 1 of 2)	7885.0	NM_010265	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	1.89265468544188	2.13066142995999	1.65160372345426	2.71230854520106	3.01179575825683	3.08634357616272	1.66394105633766	2.89115954793464	1.26593386428685	0.143021559517631	0.5904731564462
Merged-chr16-14361576-4	chr16	14361455	14361655	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008576)	promoter-TSS (NM_008576)	-3.0	NM_008576	17250.0	Mm.196634	NM_008576	ENSMUSG00000023088	Abcc1	Abcc1a|Abcc1b|MRP|Mdrap|Mrp1	ATP-binding cassette, sub-family C (CFTR/MRP), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-167349322-4	chr1	167349245	167349445	+	986.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019993)	promoter-TSS (NM_019993)	-646.0	NM_019993	56752.0	Mm.292539	NM_019993	ENSMUSG00000026687	Aldh9a1	AA139417|Abaldh|ESTM40|TMABA-DH|Tmabadh	aldehyde dehydrogenase 9, subfamily A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-144982855-4	chr3	144982745	144982945	+	911.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-7800.0	NM_207208	99663.0	Mm.442050	NM_207208	ENSMUSG00000068547	Clca4a	9130020L07Rik|AI504701|Clca4|Clca6	chloride channel accessory 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-129002791-4	chr5	129002698	129002898	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152615, intron 1 of 11)	intron (NR_152615, intron 1 of 11)	5774.0	NR_152615	13852.0	Mm.260716	NM_007941	ENSMUSG00000029428	Stx2	AW538950|Epim|G1-536-1|Syn-2|repro34	syntaxin 2	protein-coding	4.90052457250864	4.31126677183541	5.24675417688073	3.41057504294915	4.05391762558308	4.20457744611945	4.88896980623247	4.30815640373719	-0.293131382948012	0.52395552030867	0.948197779519432
Merged-chr11-70808145-2	chr11	70808045	70808245	+	839.6749880000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001045526, intron 1 of 4)	LTR85a|LTR|Gypsy?	4416.0	NM_001045526	327957.0	Mm.164325	NM_001045526	ENSMUSG00000057135	Scimp	A430084P05Rik	SLP adaptor and CSK interacting membrane protein	protein-coding	0.581539661586002	0.851262629045031	1.27772081460084	0.598408827318019	1.04766408740868	1.20986655627018	0.611180432024788	1.77558258065376	1.58817934933262	0.305093807426465	0.806636293852519
Merged-chr1-107481618-4	chr1	107481521	107481721	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29802.0	NM_001174170	18788.0	Mm.271870	NM_011111	ENSMUSG00000062345	Serpinb2	PAI-2|Planh2|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-134184511-4	chr5	134184405	134184605	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359852, intron 1 of 14)	CpG	467.0	NM_053266	114674.0	Mm.218744	NM_053266	ENSMUSG00000015942	Gtf2ird2	1700012P16Rik	GTF2I repeat domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150586423-3	chr4	150586314	150586514	+	915.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 12 of 22)	intron (NM_001085492, intron 12 of 22)	65760.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-51263537-3	chr11	51263468	51263668	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358279)	promoter-TSS (NM_001358279)	94.0	NM_001358281	193286.0	Mm.80975	NM_177567	ENSMUSG00000045942	BC049762	4930503F14	cDNA sequence BC049762	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-155417474-4	chr1	155417357	155417557	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011273)	promoter-TSS (NM_011273)	-13.0	NM_011273	19775.0	Mm.266215	NM_011273	ENSMUSG00000026469	Xpr1	Rmc-1|Rmc1|Sxv|Syg1|XR	xenotropic and polytropic retrovirus receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-123942224-4	chr9	123942153	123942353	+	957.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26439.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-159495391-4	chr3	159495298	159495498	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029523)	promoter-TSS (NM_029523)	-35.0	NM_029523	76131.0	Mm.371655	NM_029523	ENSMUSG00000028175	Depdc1a	5830484J08Rik|Depdc1	DEP domain containing 1a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-26373116-4	chr10	26372996	26373196	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172787, intron 1 of 21)	intron (NM_172787, intron 1 of 21)	976.0	NM_001359255	237339.0	Mm.338439	NM_172787	ENSMUSG00000039089	L3mbtl3	AI481284|MBT-1	L3MBTL3 histone methyl-lysine binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-27186122-2	chr8	27186022	27186222	+	633.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-11476.0	NM_001080813	75767.0	Mm.205335	NM_029423	ENSMUSG00000031488	Rab11fip1	2010200K21Rik|4833414G05Rik|Rcp	RAB11 family interacting protein 1 (class I)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-121307324-3	chr1	121307232	121307432	+	687.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271532, intron 2 of 4)	intron (NM_001271532, intron 2 of 4)	20346.0	NM_001271531	72999.0	Mm.27136	NM_133748	ENSMUSG00000003721	Insig2	2900053I11Rik|C730043J18Rik|Insig-2	insulin induced gene 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-122322622-2	chr7	122322522	122322722	+	723.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001316672, intron 2 of 16)	intron (NM_001316672, intron 2 of 16)	33497.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-34769232-2	chr10	34769132	34769332	+	735.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	285832.0	NM_010237	14302.0	Mm.332432	NM_010237	ENSMUSG00000019779	Frk	BSK|BSK/IYK|C85044|GTK|RAK	fyn-related kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-88256481-3	chr1	88256415	88256615	+	856.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001281466, exon 36 of 42)	exon (NM_001281466, exon 36 of 42)	12893.0	NR_040291	78605.0	Mm.384762	NR_040291		6430706D22Rik	-	RIKEN cDNA 6430706D22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-100876150-4	chr9	100876061	100876261	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009282, intron 14 of 33)	intron (NM_009282, intron 14 of 33)	158723.0	NM_001311149	66904.0	Mm.335385	NM_025835	ENSMUSG00000032527	Pccb	1300012P06Rik|AI314687|R74805	propionyl Coenzyme A carboxylase, beta polypeptide	protein-coding	0.999289245229166	1.53115890449611	0.566119752787238	0.556248158163242	1.23015061690274	1.54655253236252	0.568914132808619	0.557983780735653	0.272145146573764	0.869571691520629	0.998431161219273
Merged-chr15-79883471-4	chr15	79883356	79883556	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-8952.0	NM_001160415	80287.0	Mm.284059	NM_030255	ENSMUSG00000009585	Apobec3	Apobec|Arp3|BC003314|Cem15|Gm20117|Rfv3	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 3	protein-coding	6.36136452785637	5.87012968062748	5.40289876039443	5.5219905362003	6.03344893873616	5.60029333840465	4.77783102217514	5.84394367497856	-0.225191392790086	0.476926291189494	0.927980290875356
Merged-chr17-44710069-4	chr17	44709974	44710174	+	969.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271627, intron 4 of 7)	intron (NM_001271627, intron 4 of 7)	26102.0	NR_073425	12393.0	Mm.391013	NM_009820	ENSMUSG00000039153	Runx2	AML3|Cbf|Cbfa-1|Cbfa1|LS3|Osf2|PEBP2aA|Pebp2a1|Pebpa2a	runt related transcription factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55110652-2	chr14	55110552	55110752	+	549.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177049, intron 3 of 5)	intron (NM_177049, intron 3 of 5)	-4059.0	NM_007455	11766.0	Mm.238879	NM_007455	ENSMUSG00000040701	Ap1g2	Adtg2|G2ad	adaptor protein complex AP-1, gamma 2 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-5460135-2	chr15	5460035	5460235	+	694.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36183.0	NR_045274	71432.0	Mm.291087	NR_045274	ENSMUSG00000110018	5430437J10Rik	-	RIKEN cDNA 5430437J10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-4200209-2	chr11	4200109	4200309	+	553.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134023, intron 1 of 8)	intron (NM_134023, intron 1 of 8)	13376.0	NM_134023	103724.0	Mm.28140	NM_134023	ENSMUSG00000034412	Tbc1d10a	AI447804|EPI64|Tbc1d10|mFLJ00288	TBC1 domain family, member 10a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-11471524-4	chr8	11471436	11471636	+	886.479126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011227, intron 1 of 1)	L1M2|LINE|L1	-6393.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-67042422-2	chr15	67042305	67042505	+	762.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72764.0	NM_008681	17988.0	Mm.30837	NM_008681	ENSMUSG00000005125	Ndrg1	CAP43|CMT4D|DRG1|HMSNL|NMSL|Ndr1|Ndrl|PROXY1|RTP|TDD5	N-myc downstream regulated gene 1	protein-coding	-2.18138529563533	-2.15523716995652	-2.1631445789866	-2.16963996020037	-2.05513010215571	-2.15352360143315	-2.16135451490766	-2.16847729006863	0.759018020146679	0.829933115115583	1
Merged-chr2-166292014-1	chr2	166291914	166292114	+	541.0	f1_balb.idr	intron (NR_033467, intron 2 of 2)	(TG)n|Simple_repeat|Simple_repeat	18106.0	NR_033467	670775.0	Mm.384326	NR_033467	ENSMUSG00000084840	Gm11468	-	predicted gene 11468	ncRNA	0.0793215493535312	0.0938241775402722	0.388868850198497	0.364308364938363	0.606151713937914	0.0949048092460846	0.255612691894587	0.368614619829662	0.852683993832069	0.664127553589392	1
Merged-chr3-88745159-4	chr3	88745073	88745273	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_018804, exon 4 of 4)	3' UTR (NM_018804, exon 4 of 4)	27426.0	NM_018804	229521.0	Mm.379376	NM_018804	ENSMUSG00000068923	Syt11	1500004A13Rik|3632445O20Rik|5430404N14Rik|6530420C11Rik|AI851970	synaptotagmin XI	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-91701773-2	chr13	91701673	91701873	+	639.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001360775)	TTS (NM_001360775)	-39748.0	NM_028790	74156.0	Mm.275963	NM_028790	ENSMUSG00000021620	Acot12	1300004O04Rik|4930449F15Rik|AV027244|Cach|mCACH-1	acyl-CoA thioesterase 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-17023092-2	chr7	17022992	17023192	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011155, intron 1 of 12)	intron (NM_011155, intron 1 of 12)	4822.0	NM_011155	19060.0	Mm.3294	NM_011155	ENSMUSG00000003099	Ppp5c	AU020526|PP5	protein phosphatase 5, catalytic subunit	protein-coding	0.452334598305246	1.09993597192209	0.14803662569756	0.140972450524465	0.130838779024246	1.11489907624142	0.150040472017185	0.142212769236408	-0.26590937714867	0.896143992831864	1
Merged-chr8-128491886-4	chr8	128491794	128491994	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358959, intron 12 of 16)	intron (NM_001358959, intron 12 of 16)	132653.0	NR_035436	100316680.0		NR_035436	ENSMUSG00000084523	Mir1903	Mirn1903|mmu-mir-1903	microRNA 1903	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180390993-4	chr1	180390885	180391085	+	955.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081175, intron 2 of 7)	intron (NM_001081175, intron 2 of 7)	-60436.0	NR_003623	277333.0	Mm.389223	NM_199472		Gm5069	EG277333	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-26375969-4	chr10	26375862	26376062	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172787)	promoter-TSS (NM_172787)	-743.0	NM_172787	237339.0	Mm.338439	NM_172787	ENSMUSG00000039089	L3mbtl3	AI481284|MBT-1	L3MBTL3 histone methyl-lysine binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-139225471-2	chr7	139225370	139225570	+	650.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001143755, intron 6 of 8)	intron (NM_001143755, intron 6 of 8)	-12163.0	NM_001162540	57740.0	Mm.65336	NM_021302	ENSMUSG00000015981	Stk32c	PKE|Pkek|YANK3	serine/threonine kinase 32C	protein-coding	1.0552419171653	0.560245447200774	0.911081504371041	0.542096213634108	0.958574679798274	0.562528921282087	0.919695756906972	1.57807763383055	1.31161050824563	0.409692648403065	0.89372308288917
Merged-chr6-92209921-3	chr6	92209825	92210025	+	719.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030081, intron 2 of 11)	intron (NM_030081, intron 2 of 11)	4886.0	NM_030081	78287.0	Mm.290734	NM_030081	ENSMUSG00000014550	Rbsn	5330426D11Rik|Zfyve20	rabenosyn, RAB effector	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129369247-4	chr2	129369147	129369347	+	784.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015474)	promoter-TSS (NR_015474)	-655.0	NR_015474	329514.0	Mm.207315	NM_177848	ENSMUSG00000074805	Il1bos	9430083I22|Gm14047	interleukin 1 beta, opposite strand	ncRNA	2.74504207871948	1.45680026627523	3.07031218749898	2.49263890096913	2.4878201340103	1.46737033121139	3.71469346367943	2.91471305000389	0.587778067165831	0.51670569869757	0.947641799425091
Merged-chr7-45920088-2	chr7	45919988	45920188	+	890.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001146346, intron 2 of 4)	intron (NM_001146346, intron 2 of 4)	761.0	NM_001146346	13732.0	Mm.20829	NM_010129	ENSMUSG00000040212	Emp3	H-4|H4|HNMP-1|MI-35|Ymp	epithelial membrane protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-149261039-4	chr6	149260908	149261108	+	836.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48406.0	NM_001289661	67246.0	Mm.333515	NM_026054	ENSMUSG00000032712	2810474O19Rik	6720435I21Rik|AA536804|AU020969|GET|Kiaa1551	RIKEN cDNA 2810474O19 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-5160342-2	chr12	5160242	5160442	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164493, intron 3 of 13)	intron (NM_001164493, intron 3 of 13)	215340.0	NM_001164493	208439.0	Mm.388281	NM_001164493	ENSMUSG00000020627	Klhl29	A230106N14Rik|Gm68|Kbtbd9|mKIAA1921	kelch-like 29	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3821403-2	chr12	3821303	3821503	+	673.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271753, intron 1 of 22)	intron (NM_001271753, intron 1 of 22)	14243.0	NM_001271753	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-124068297-3	chr9	124068198	124068398	+	936.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33885.0	NM_009915	12772.0	Mm.6272	NM_009915	ENSMUSG00000049103	Ccr2	Cc-ckr-2|Ccr2a|Ccr2b|Ckr2|Ckr2a|Ckr2b|Cmkbr2|mJe-r	chemokine (C-C motif) receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123344411-4	chr5	123344328	123344528	+	849.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029850)	promoter-TSS (NM_029850)	-20.0	NM_029850	77045.0	Mm.151960	NM_029850	ENSMUSG00000029438	Bcl7a	4432415N06Rik|AI448316	B cell CLL/lymphoma 7A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-97560596-2	chr16	97560496	97560696	+	552.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_003508, exon 14 of 14)	non-coding (NR_003508, exon 14 of 14)	24513.0	NM_013606	17858.0	Mm.14157	NM_013606	ENSMUSG00000023341	Mx2	AI528743|Mx-2	MX dynamin-like GTPase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134321697-3	chr6	134321717	134321917	+	810.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153848, intron 3 of 8)	MTEa|LTR|ERVL-MaLR	-74512.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	1.40250946779116	1.77274898744302	2.17926551028783	2.23161872512511	2.55875191989454	2.13486937941216	1.26041094823669	3.00175229817306	1.07485212371724	0.281099747181794	0.78400185225177
Merged-chr6-29848962-4	chr6	29848821	29849021	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001171000, intron 1 of 16)	RSINE1|SINE|B4	-4820.0	NM_001347084	74340.0	Mm.210899	NM_021414	ENSMUSG00000029772	Ahcyl2	4631427C17Rik|AI227036|Adohcyase3|mKIAA0828	S-adenosylhomocysteine hydrolase-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-181601263-4	chr2	181601167	181601367	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133701)	promoter-TSS (NM_133701)	-52.0	NM_133701	68879.0	Mm.292001	NM_133701	ENSMUSG00000002455	Prpf6	1190003A07Rik|2610031L17Rik|ANT-1|U5-102K	pre-mRNA splicing factor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-70841193-4	chr9	70841086	70841286	+	949.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001324473, intron 1 of 8)	intron (NM_001324473, intron 1 of 8)	93622.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117411563-2	chr10	117411463	117411663	+	896.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-34590.0	NM_001310609	432508.0	Mm.478881	NM_001013391	ENSMUSG00000055531	Cpsf6	4733401N12Rik|AI256641|CFIM|CFIM68|HPBRII-4|HPBRII-7	cleavage and polyadenylation specific factor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-113642364-2	chr6	113642264	113642464	+	779.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 1 of 11)	B1_Mus1|SINE|Alu	3897.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34251811-4	chr17	34251706	34251906	+	779.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11421.0	NM_207105	14961.0	Mm.254067	NM_207105	ENSMUSG00000073421	H2-Ab1	AI845868|Abeta|H-2Ab|H2-Ab|I-Abeta|IAb|Ia-2|Ia2|Rmcs1	histocompatibility 2, class II antigen A, beta 1	protein-coding	0.207059141483825	0.231702578249592	0.845557600077767	0.217486813181705	0.208618753795132	0.628873046585984	1.15730986078033	0.404139020165731	1.39506429999287	0.469378230446953	1
Merged-chr18-61118816-2	chr18	61118716	61118916	+	548.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037859, intron 10 of 21)	intron (NM_001037859, intron 10 of 21)	1348.0	NR_105949	102466212.0		NR_105949	ENSMUSG00000098389	Mir6983	Gm27496|mmu-mir-6983	microRNA 6983	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16396147-3	chr7	16396048	16396248	+	795.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5048.0	NM_198631	330474.0	Mm.333594	NM_198631	ENSMUSG00000059273	Zc3h4	Bwq1|Gm768|Kiaa1064-hp|mKIAA1064	zinc finger CCCH-type containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-115383791-4	chr10	115383658	115383858	+	866.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025780, intron 1 of 2)	intron (NM_025780, intron 1 of 2)	677.0	NM_025780	66816.0	Mm.32314	NM_025780	ENSMUSG00000020137	Thap2	2900040O07Rik|9030625G08Rik|AI450385|AI649097	THAP domain containing, apoptosis associated protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-173694487-4	chr1	173694436	173694636	+	910.8875119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162938, intron 5 of 6)	ERVB2_1-I_MM-int|LTR|ERVK	20856.0	NM_001162938	100033459.0	Mm.303377	NM_001162938	ENSMUSG00000066677	Ifi208	9830148g24rik|E430029J22Rik|NG2creBAC|Pydc3|Pyr-rv1|Tg(Cspg4-cre)1Akik	interferon activated gene 208	protein-coding	1.64731237315301	2.84263248001842	1.78369013824425	1.7339969186156	1.6605797018607	2.01286560827618	1.62811811547901	1.74280293030142	-0.931044285164074	0.34504904826969	0.845797837334461
Merged-chr4-6454769-2	chr4	6454669	6454869	+	895.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010945)	promoter-TSS (NM_010945)	-498.0	NM_010945	18201.0	Mm.3059	NM_010945	ENSMUSG00000028245	Nsmaf	AA959567|C630007J05|Fan	neutral sphingomyelinase (N-SMase) activation associated factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-94059923-2	chr13	94059823	94060023	+	653.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172589, intron 1 of 3)	intron (NM_172589, intron 1 of 3)	2127.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-79785181-4	chr9	79785085	79785285	+	778.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133718, intron 1 of 6)	L2|LINE|L2	8245.0	NM_133718	69981.0	Mm.486324	NM_133718	ENSMUSG00000032328	Tmem30a	2010200I23Rik|AW540225|Cdc50a|D9Wsu20e	transmembrane protein 30A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-120509024-4	chr5	120508919	120509119	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2173.0	NM_001177595	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-34233704-2	chr10	34233604	34233804	+	731.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR24|LTR|ERV1	-26153.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-121721985-4	chr5	121721872	121722072	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009125, intron 1 of 24)	Tigger15a|DNA|TcMar-Tigger	10363.0	NM_009125	20239.0	Mm.260900	NM_009125	ENSMUSG00000042605	Atxn2	9630045M23Rik|ATX2|AW544490|Sca2	ataxin 2	protein-coding	4.43554902050106	3.39146558385594	3.03495761901702	3.95145704205296	4.04357457462868	4.02715494234625	3.50191746869197	3.71467461746393	0.0179504452858494	0.97257696760636	0.998431161219273
Merged-chr2-44926437-1	chr2	44926337	44926537	+	1000.0	f0_balb.idr	Intergenic	Intergenic	-64815.0	NM_172662	227835.0	Mm.314312	NM_172662	ENSMUSG00000036890	Gtdc1	E330008O22Rik	glycosyltransferase-like domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35174656-4	chr17	35174553	35174753	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019467, intron 1 of 7)	MER21C|LTR|ERVL	1399.0	NM_019467	11629.0	Mm.10747	NM_019467	ENSMUSG00000024397	Aif1	AI607846|AIF-1|D17H6S50E|G1|Iba1	allograft inflammatory factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-4067295-4	chr7	4067192	4067392	+	968.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4088.0	NM_001302676	52855.0	Mm.290880	NM_178611	ENSMUSG00000055541	Lair1	5133400O11Rik|BB115266|D7Bwg0421e|Lair-1	leukocyte-associated Ig-like receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-87843658-2	chr6	87843558	87843758	+	623.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_013493, exon 5 of 5)	3' UTR (NM_013493, exon 5 of 5)	-4899.0	NM_133934	57905.0	Mm.241546	NM_133934	ENSMUSG00000030056	Isy1	5830446M03Rik|AI181014|AU020769	ISY1 splicing factor homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-32328243-3	chr6	32328047	32328247	+	779.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175750, intron 3 of 31)	intron (NM_175750, intron 3 of 31)	-182994.0	NR_040277	319849.0	Mm.440860	NR_040277	ENSMUSG00000086763	Plxna4os1	B230378P21Rik	plexin A4, opposite strand 1	ncRNA	0.543619835140879	1.53389843454919	0.0700074437203967	0.0617106883105152	0.0497136728178281	0.0828795357543933	0.0723512851924755	0.46751237221216	-2.90844449698566	0.152048551361522	1
Merged-chr10-19179393-2	chr10	19179294	19179494	+	585.833313	f1_balb.idr|f1_c57bl6.idr	intron (NR_038022, intron 1 of 1)	intron (NR_038022, intron 1 of 1)	12156.0	NR_038022	100504265.0	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-65955046-2	chr5	65954946	65955146	+	544.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12078.0	NM_001081104	231252.0	Mm.140015	NM_001081104	ENSMUSG00000029205	Chrna9	2410015I05Rik|Acra9|EG666827|Gm8311	cholinergic receptor, nicotinic, alpha polypeptide 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-96267242-2	chr5	96267142	96267342	+	828.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_053158)	TTS (NM_053158)	57127.0	NM_053158	94061.0	Mm.295499	NM_053158	ENSMUSG00000029486	Mrpl1	2410002L03Rik|5830418D04Rik|AI462572|L1mt	mitochondrial ribosomal protein L1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-64360787-2	chr7	64360687	64360887	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177893, intron 8 of 13)	intron (NM_177893, intron 8 of 13)	13308.0	NM_177893	330554.0	Mm.236510	NM_177893	ENSMUSG00000033458	Fan1	6030441H18Rik|Mtmr15|mFAN1	FANCD2/FANCI-associated nuclease 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-21266711-3	chr12	21266638	21266838	+	870.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004364, intron 26 of 26)	intron (NM_001004364, intron 26 of 26)	19546.0	NM_008403	16413.0	Mm.273333	NM_008403	ENSMUSG00000062352	Itgb1bp1	AI449260|AU019480|Icap1	integrin beta 1 binding protein 1	protein-coding	1.46144797275532	1.85572612934495	3.18912098325696	1.06832877456614	1.64577628711944	2.04124383467334	2.63542503763313	1.33978925482119	-0.396717240033626	0.714293782927557	0.998431161219273
Merged-chr9-107231806-4	chr9	107231707	107231907	+	943.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_153413, exon 1 of 53)	5' UTR (NM_153413, exon 1 of 53)	102.0	NM_153413	208869.0	Mm.150259	NM_153413	ENSMUSG00000039716	Dock3	MOCA|PBP|mKIAA0299	dedicator of cyto-kinesis 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-43780114-2	chr13	43780014	43780214	+	669.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-4998.0	NM_009856	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-86873284-4	chr8	86873178	86873378	+	987.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030563, intron 1 of 6)	intron (NM_030563, intron 1 of 6)	11980.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-184628964-3	chr1	184628880	184629080	+	688.849976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-71289.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-20808374-2	chr16	20808274	20808474	+	929.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-73863.0	NM_009379	21832.0	Mm.3943	NM_009379	ENSMUSG00000022847	Thpo	Mgdf|Ml|Mpllg|Tpo	thrombopoietin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-30503946-3	chr18	30503874	30504074	+	880.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	231109.0	NR_151699	225326.0	Mm.194127	NM_181414	ENSMUSG00000033628	Pik3c3	5330434F23Rik|Vps34	phosphatidylinositol 3-kinase catalytic subunit type 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-76328058-2	chr14	76327958	76328158	+	949.6666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	76596.0	NR_152108	72893.0	Mm.233565	NR_152108		2900040C04Rik	-	RIKEN cDNA 2900040C04 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-146772168-4	chr5	146772076	146772276	+	980.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011669, intron 1 of 8)	intron (NM_011669, intron 1 of 8)	22780.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	3.23857265939146	3.63741421845739	3.67678656765765	3.23466181496703	3.94597761089743	4.32867538307633	2.87780765905926	3.91926669599249	0.601807773954615	0.263838064080079	0.76597735751721
Merged-chr18-56981223-3	chr18	56981087	56981287	+	964.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-5808.0	NM_029909	77422.0	Mm.256874	NM_029909	ENSMUSG00000024592	C330018D20Rik	AU018666	RIKEN cDNA C330018D20 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-3512181-4	chr2	3512080	3512280	+	998.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177647)	promoter-TSS (NM_177647)	634.0	NR_103465	50497.0	Mm.89341	NM_015765	ENSMUSG00000051396	Hspa14	70kDa|HSP70L1|Hsp70-4|NST-1|hsr.1	heat shock protein 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-111046393-4	chr9	111046292	111046492	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	10852.0	NM_001302377	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-105736547-4	chr14	105736403	105736603	+	915.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-112733.0	NR_105814	102465207.0		NR_105814	ENSMUSG00000098780	Mir6390	Gm27562|mmu-mir-6390	microRNA 6390	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126429062-4	chr7	126428944	126429144	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_030566, exon 1 of 13)	5' UTR (NM_030566, exon 1 of 13)	277.0	NM_030566	70314.0	Mm.35467	NM_030566	ENSMUSG00000030727	Rabep2	2610011A08Rik|AI462746|Fra	rabaptin, RAB GTPase binding effector protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-7703695-3	chr18	7703578	7703778	+	870.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-76815.0	NM_001161620	75739.0	Mm.133293	NM_001081287	ENSMUSG00000057440	Mpp7	1110068J02Rik|2810038M04Rik|5430426E14Rik|AI415104|Gm955	membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-57318265-2	chr17	57318165	57318365	+	600.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163816, intron 23 of 25)	MTEa|LTR|ERVL-MaLR	39165.0	NM_001163815	22324.0	Mm.248172	NM_011691	ENSMUSG00000034116	Vav1	Vav|vav-T	vav 1 oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-24079696-2	chr11	24079596	24079796	+	668.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159290)	promoter-TSS (NM_001159290)	-999.0	NM_001159290	14025.0	Mm.53687	NM_016707	ENSMUSG00000000861	Bcl11a	2810047E18Rik|BCL-11A|Ctip1|D930021L15Rik|Evi9|Evi9a|Evi9b|Evi9c|mKIAA1809	B cell CLL/lymphoma 11A (zinc finger protein)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4937771-2	chr16	4937671	4937871	+	856.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001357061, exon 16 of 16)	3' UTR (NM_001357061, exon 16 of 16)	-1340.0	NM_001316715	66911.0	Mm.428698	NM_025839	ENSMUSG00000022516	Nudt16l1	1110001K21Rik|5330437I08Rik|Sdos	nudix (nucleoside diphosphate linked moiety X)-type motif 16-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-44957263-2	chr13	44957163	44957363	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025772, intron 6 of 9)	intron (NM_025772, intron 6 of 9)	44833.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71628020-4	chr8	71627918	71628118	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001029873, exon 42 of 42)	3' UTR (NM_001029873, exon 42 of 42)	3088.0	NR_106035	102466799.0		NR_106035	ENSMUSG00000098976	Mir6769b	Gm27546|mmu-mir-6769b	microRNA 6769b	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-72660334-4	chr9	72660234	72660434	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1997.0	NM_010890	17999.0	Mm.279923	NM_010890	ENSMUSG00000032216	Nedd4	AA959633|AL023035|AU019897|E430025J12Rik|EG639396|Gm7265|KIAA0093|Nedd4-1|Nedd4a	neural precursor cell expressed, developmentally down-regulated 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26931941-4	chr17	26931825	26932025	+	873.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053173, intron 10 of 10)	intron (NM_053173, intron 10 of 10)	-1202.0	NM_001302397	21652.0	Mm.258953	NM_009343	ENSMUSG00000024193	Phf1	AW557215|D17Ertd455e|Pcl1|Phf2|Tctex3	PHD finger protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-37348914-2	chr10	37348814	37349014	+	705.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-209988.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-113518329-1	chr7	113518229	113518429	+	659.0	f0_balb.idr	intron (NM_001360668, intron 1 of 12)	intron (NM_001360668, intron 1 of 12)	4495.0	NM_001360669	67420.0	Mm.206919	NM_026143	ENSMUSG00000030759	Far1	2600011M19Rik|2900034E22Rik|3732409C05Rik|AI850429|Mlstd2	fatty acyl CoA reductase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-43685557-4	chr7	43685446	43685646	+	874.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4872.0	NM_174866	317653.0	Mm.247377	NM_174866	ENSMUSG00000044737	Klk14	GK14	kallikrein related-peptidase 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-60181053-4	chr9	60180945	60181145	+	893.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040426, intron 7 of 17)	intron (NM_001040426, intron 7 of 17)	-39825.0	NM_172444	207596.0	Mm.28791	NM_172444	ENSMUSG00000032289	Thsd4	ADAMTSL-6|ADAMTSL6|AI585901|Adamtsl4|B230114P05Rik	thrombospondin, type I, domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-84785374-4	chr18	84785283	84785483	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	41316.0	NR_155706	102641800.0		NR_155706		Gm38576	-	predicted gene, 38576	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-79306558-2	chr11	79306458	79306658	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	-33334.0	NM_010897	18015.0	Mm.255596	NM_010897	ENSMUSG00000020716	Nf1	AW494271|Dsk9|E030030H24Rik|Mhdadsk9|Nf-1	neurofibromin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-65749986-2	chr17	65749877	65750077	+	828.0	f0_c57.idr|f1_c57bl6.idr	intron (NM_133685, intron 1 of 6)	intron (NM_133685, intron 1 of 6)	22775.0	NM_133685	106572.0	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	4.32072116135425	3.961640555453	4.74146032110873	3.78209798555099	2.09395086267257	3.42846431175594	1.53539220416469	1.46707917546065	-2.8729840489111	0.012188764690076	0.125481073907763
Merged-chr4-3793900-1	chr4	3793800	3794000	+	880.0	f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	41755.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	2.22271686424173	3.3432749296614	3.05035956705536	3.8974959476835	1.41803522887308	3.27911275528306	3.07495883840807	2.65022758664876	-0.830228158892936	0.290089992209128	0.795360911821054
Merged-chr7-127478434-3	chr7	127478323	127478523	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-6798.0	NM_010183	14123.0	Mm.323505	NM_010183	ENSMUSG00000042423	Fbrs	Fbs|Fbs1	fibrosin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-74489497-4	chr17	74489414	74489614	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026417)	promoter-TSS (NM_026417)	21.0	NM_026417	67864.0	Mm.41891	NM_026417	ENSMUSG00000024072	Yipf4	2310034L04Rik	Yip1 domain family, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-80615621-4	chr1	80615518	80615718	+	873.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175291, intron 3 of 55)	intron (NM_175291, intron 3 of 55)	49734.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4912292-2	chr16	4912192	4912392	+	553.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357062, intron 4 of 17)	intron (NM_001357062, intron 4 of 17)	26192.0	NM_001357061	17237.0	Mm.291326	NM_029657	ENSMUSG00000022517	Mgrn1	2610042J20Rik|mKIAA0544|md|nc	mahogunin, ring finger 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-54248552-5	chr3	54248388	54248588	+	900.742859	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253682, intron 3 of 11)	intron (NM_001253682, intron 3 of 11)	92431.0	NM_001253682	22066.0	Mm.10100	NM_016984	ENSMUSG00000027748	Trpc4	CCE1|STRPC4|Trp4|Trrp4	transient receptor potential cation channel, subfamily C, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-87893156-4	chr4	87893054	87893254	+	590.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027326, intron 2 of 10)	intron (NM_027326, intron 2 of 10)	-86831.0	NM_029931	70122.0	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-22264282-2	chr16	22264182	22264382	+	765.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001330555, intron 1 of 9)	intron (NM_001330555, intron 1 of 9)	1723.0	NM_001330554	20462.0	Mm.210352	NM_009186	ENSMUSG00000022858	Tra2b	5730405G21Rik|D16Ertd266e|SIG-41|Sfrs10|Silg41|TRA2beta	transformer 2 beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27030383-2	chr2	27030283	27030483	+	579.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2385.0	NM_001177627	227659.0	Mm.41203	NM_172659	ENSMUSG00000036067	Slc2a6	A330096C23|F630103L12Rik|Glut6|Glut9	solute carrier family 2 (facilitated glucose transporter), member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-23415103-2	chr16	23415003	23415203	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14030.0	NM_001004151	239766.0	Mm.208751	NM_001004151	ENSMUSG00000033383	Rtp1	Gm1766|Gm604	receptor transporter protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-34448140-1	chr6	34448040	34448240	+	547.0	f1_balb.idr	Intergenic	Intergenic	-28216.0	NM_007563	12183.0	Mm.282863	NM_007563	ENSMUSG00000038871	Bpgm	AI323730|AL022789|C86192	2,3-bisphosphoglycerate mutase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-32193186-4	chr17	32193088	32193288	+	925.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	-3718.0	NM_001347341	71932.0	Mm.176240	NM_001033163	ENSMUSG00000037577	Ephx3	2310063B19Rik|Abhd9|EH3	epoxide hydrolase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80261072-4	chr10	80260958	80261158	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347119)	promoter-TSS (NM_001347119)	-46.0	NM_010255	14431.0	Mm.7329	NM_010255	ENSMUSG00000020150	Gamt	AA571402|Spintz1	guanidinoacetate methyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-85209008-2	chr13	85208908	85209108	+	563.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023243, intron 7 of 8)	intron (NM_023243, intron 7 of 8)	19623.0	NM_023243	66671.0	Mm.18474	NM_023243	ENSMUSG00000021548	Ccnh	6330408H09Rik|AI661354|AV102684|AW538719	cyclin H	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-58917098-3	chr11	58916998	58917198	+	833.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138678)	promoter-TSS (NM_138678)	-959.0	NM_138678	192194.0	Mm.22540	NM_138678	ENSMUSG00000020490	Btnl10	BUTR-1|Butr1	butyrophilin-like 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-54696519-4	chr12	54696449	54696649	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001331162)	promoter-TSS (NM_001331162)	-655.0	NM_025456	66266.0	Mm.156440	NM_025456	ENSMUSG00000054302	Eapp	1810011O16Rik	E2F-associated phosphoprotein	protein-coding	1.80016557492674	1.75523719133479	1.54499614517329	1.78226369705832	1.45207150511998	1.7676971306352	2.34280822373725	1.51393192327429	0.316253528116892	0.758310648474174	0.998431161219273
Merged-chr13-55472480-9	chr13	55472318	55472518	+	992.111084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001030296, exon 2 of 3)	exon (NM_001030296, exon 2 of 3)	5358.0	NR_105909	102465569.0		NR_105909	ENSMUSG00000098341	Mir6944	Gm27710|mmu-mir-6944	microRNA 6944	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6239185-2	chr19	6239085	6239285	+	945.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10B|LTR|ERVL	-2483.0	NM_194348	329015.0	Mm.277384	NM_194348	ENSMUSG00000024773	Atg2a	1810013C15Rik|A830054M12|BC023754|mKIAA0404	autophagy related 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-74645776-4	chr7	74645661	74645861	+	974.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-90981.0	NM_001038643	108116.0	Mm.425467	NM_023908	ENSMUSG00000025790	Slco3a1	5830414C08Rik|Anr1|MJAM|OATP-D|R75096|Slc21a11	solute carrier organic anion transporter family, member 3a1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-137628914-4	chr5	137628821	137629021	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001168652)	promoter-TSS (NM_001168652)	-202.0	NM_001168652	231798.0	Mm.200763	NM_146164	ENSMUSG00000093445	Lrch4	2810008P14Rik|2900069C24Rik|AI558103|LRN|LRRN4|SAP25|mFLJ00248	leucine-rich repeats and calponin homology (CH) domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-53764662-2	chr11	53764562	53764762	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1008.0	NR_106131	102465772.0		NR_106131	ENSMUSG00000099153	Mir7671	Gm27802|mmu-mir-7671	microRNA 7671	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120643801-4	chr11	120643713	120643913	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001348222)	promoter-TSS (NM_001348222)	-44.0	NM_001348222	209027.0	Mm.127731	NM_144795	ENSMUSG00000025140	Pycr1	P5CR 1|P5CR1	pyrroline-5-carboxylate reductase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-105642635-6	chr7	105642581	105642781	+	810.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001360053)	TTS (NM_001360053)	2236.0	NM_001360054	14356.0	Mm.220330	NM_019502	ENSMUSG00000089847	Timm10b	Fxc1|Tim10b|Tim9b	translocase of inner mitochondrial membrane 10B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3685301-2	chr19	3685201	3685401	+	888.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008513, intron 1 of 22)	intron (NM_008513, intron 1 of 22)	1263.0	NM_008513	16973.0	Mm.274581	NM_008513	ENSMUSG00000024913	Lrp5	BMND1|HBM|LR3|LRP7|OPPG|mKIAA4142	low density lipoprotein receptor-related protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-60089340-4	chr2	60089238	60089438	+	997.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001182, intron 1 of 35)	intron (NM_001001182, intron 1 of 35)	36402.0	NM_001001182	407823.0	Mm.228071	NM_001001182	ENSMUSG00000026987	Baz2b	5830435C13Rik|BC053917|D2Ertd794e	bromodomain adjacent to zinc finger domain, 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-11492153-3	chr10	11492051	11492251	+	694.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	-117073.0	NM_013898	30058.0	Mm.214504	NM_013898	ENSMUSG00000048007	Timm8a1	DXHXS1274E|Ddp1|Fci-12|Tim8a|Timm8a	translocase of inner mitochondrial membrane 8A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-153873674-1	chr4	153873574	153873774	+	743.0	f0_balb.idr	Intergenic	Intergenic	76802.0	NR_040670	407793.0	Mm.260950	NR_040670		BC039966	-	cDNA sequence BC039966	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-79191893-4	chr12	79191791	79191991	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001362269)	promoter-TSS (NM_001362269)	-36.0	NM_021557	17252.0	Mm.291799	NM_021557	ENSMUSG00000066441	Rdh11	2610319N22Rik|AI428145|AU045252|Arsdr1|C85936|CGI-82|HCBP12|M42C60|Mdt1|Psdr1|SCALD|UBE-1c1|Ube-1c|ralR1	retinol dehydrogenase 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-118554543-4	chr2	118554378	118554578	+	990.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4792.0	NM_138313	171543.0	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	-1.84436392554074	-1.52091821270385	-1.82290882857571	-1.83054882630441	-1.84220491470818	-1.81159244170985	-1.82080331928423	-1.82918127036376	-1.56828060379516	0.655578384384393	1
Merged-chr5-123487890-2	chr5	123487790	123487990	+	883.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1435.0	NM_001033461	381741.0	Mm.297826	NM_001033461	ENSMUSG00000063409	Lrrc43	Gm1061	leucine rich repeat containing 43	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-32907433-3	chr19	32907333	32907533	+	743.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1E2|LTR|ERVL-MaLR	149856.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-165580475-2	chr1	165580375	165580575	+	692.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54066.0	NM_001001880	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120621429-2	chr8	120621329	120621529	+	800.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_001308449, intron 2 of 3)	intron (NM_001308449, intron 2 of 3)	12953.0	NM_197988	68918.0	Mm.473736	NM_197988	ENSMUSG00000043687	1190005I06Rik	-	RIKEN cDNA 1190005I06 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117242344-2	chr11	117242244	117242444	+	548.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113486, intron 2 of 11)	intron (NM_001113486, intron 2 of 11)	-23902.0	NM_001113487	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10803937-4	chr19	10803837	10804037	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009852, intron 1 of 12)	intron (NM_009852, intron 1 of 12)	26121.0	NM_001037801	12511.0	Mm.290897	NM_009852	ENSMUSG00000024670	Cd6	-	CD6 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-147389185-3	chr5	147389051	147389251	+	795.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010229, intron 1 of 23)	L1ME2|LINE|L1	11338.0	NM_010229	14255.0	Mm.194	NM_010229	ENSMUSG00000042817	Flt3	B230315G04|CD135|Flk-2|Flk2|Flt-3|Ly72|wmfl	FMS-like tyrosine kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-55386952-4	chr4	55386843	55387043	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009011, intron 9 of 9)	RMER10B|LTR|ERVL	31899.0	NR_040674	100415914.0	Mm.261765	NR_040674	ENSMUSG00000087070	Gm12505	-	predicted gene 12505	ncRNA	2.29799096416161	3.69963908644484	3.01396854208671	3.4847030481214	3.13687089060817	1.99715326007631	3.39599161390743	3.13133288878243	-0.345571304839245	0.619958918154749	0.978719355265878
Merged-chr16-3723184-2	chr16	3723084	3723284	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-5060.0	NM_001161791	54483.0	Mm.143718	NM_019453	ENSMUSG00000022534	Mefv	FMF|TRIM20|pyrin	Mediterranean fever	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-114887973-1	chr7	114887873	114888073	+	730.0	f1_balb.idr	Intergenic	RLTR45|LTR|ERVK	-60677.0	NR_040317	101786.0	Mm.395157	NR_040317	ENSMUSG00000108379	A730082K24Rik	AU044236	RIKEN cDNA A730082K24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-67037450-4	chr6	67037352	67037552	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007836)	promoter-TSS (NM_007836)	-45.0	NM_007836	13197.0	Mm.72235	NM_007836	ENSMUSG00000036390	Gadd45a	AA545191|Ddit1|GADD45	growth arrest and DNA-damage-inducible 45 alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-56902952-3	chr1	56902834	56903034	+	693.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358580, intron 4 of 11)	intron (NM_001358580, intron 4 of 11)	68400.0	NM_139146	212712.0	Mm.145599	NM_139146	ENSMUSG00000038331	Satb2	mKIAA1034	special AT-rich sequence binding protein 2	protein-coding	1.14889742239531	1.87237884343112	1.22180011328274	1.75062708287937	1.67111669666307	1.02616110896125	1.56624264812453	2.04081794444467	0.302765999234498	0.797787960302227	0.998431161219273
Merged-chr1-191852733-1	chr1	191852633	191852833	+	869.0	f1_c57bl6.idr	Intergenic	RLTR26B_MM|LTR|ERVK	31260.0	NM_010892	18005.0	Mm.33773	NM_010892	ENSMUSG00000026622	Nek2	AA617254|C77054	NIMA (never in mitosis gene a)-related expressed kinase 2	protein-coding	2.62200597842988	2.13921610501736	2.19915694219312	1.4905106590513	2.25009044155984	1.31301539675056	2.93755494452041	1.86896247719388	0.143341908801882	0.88448613869932	0.998431161219273
Merged-chr12-84004032-4	chr12	84003930	84004130	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-5472.0	NM_012006	26897.0	Mm.1978	NM_012006	ENSMUSG00000072949	Acot1	ACH2|CTE-1|CTE-I|Cte1|D12Ucla1	acyl-CoA thioesterase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44887134-4	chr7	44887039	44887239	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001331206, intron 3 of 16)	intron (NM_001331206, intron 3 of 16)	5285.0	NM_001331208	75613.0	Mm.157778	NM_029365	ENSMUSG00000002968	Med25	2610034E13Rik|2610529E18Rik|ESTM2	mediator complex subunit 25	protein-coding	2.96580730208808	2.35219937368542	3.56665818683994	2.63623664926111	1.70948196374619	2.95751668538704	3.59325592264084	3.05910895730118	0.0459444120852488	0.951563432994436	0.998431161219273
Merged-chr2-3664307-4	chr2	3664190	3664390	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49168.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-94307160-2	chr8	94307060	94307260	+	604.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357268, intron 14 of 20)	intron (NM_001357268, intron 14 of 20)	-17151.0	NR_029552	723956.0		NR_029552	ENSMUSG00000065512	Mir138-2	Mirn138-2|mir-138-2	microRNA 138-2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-53174793-2	chr16	53174693	53174893	+	568.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-359049.0	NR_040495	73820.0	Mm.60493	NR_040495		4930404A05Rik	-	RIKEN cDNA 4930404A05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101416648-2	chr7	101416548	101416748	+	862.6666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5043.0	NM_001008548	207728.0	Mm.247564	NM_001008548	ENSMUSG00000030653	Pde2a	CGS-PDE|cGSPDE	phosphodiesterase 2A, cGMP-stimulated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-160616827-2	chr2	160616727	160616927	+	770.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	-29070.0	NM_009408	21969.0	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-46066867-4	chr1	46066719	46066919	+	697.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001160386)	promoter-TSS (NM_001160386)	81.0	NM_001160386	227058.0	Mm.296880	NM_001160386	ENSMUSG00000041144	Dnah7b	Dnahc7b|Gm107	dynein, axonemal, heavy chain 7B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-94322037-4	chr11	94321947	94322147	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_155068)	promoter-TSS (NR_155068)	-84.0	NM_001361573	67684.0	Mm.30927	NM_026313	ENSMUSG00000020863	Luc7l3	3300001P08Rik|Luc7a	LUC7-like 3 (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-79349275-3	chr2	79349193	79349393	+	943.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001048176, intron 5 of 12)	L1_Mur3|LINE|L1	79695.0	NM_001048176	228094.0	Mm.440704	NM_001033295	ENSMUSG00000075256	Cerkl	Gm1958|Rp26	ceramide kinase-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-160249698-2	chr2	160249598	160249798	+	556.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	77796.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-47294491-3	chr14	47294375	47294575	+	914.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3799.0	NM_178684	218975.0	Mm.212297	NM_178684	ENSMUSG00000021840	Mapk1ip1l	9130202B12|C130032J12Rik	mitogen-activated protein kinase 1 interacting protein 1-like	protein-coding	-0.369421755444154	-0.641374009290437	-0.645347539005701	-0.648420801864181	-0.652775087352273	-0.640479841063662	0.170198846463605	-0.6478834323802	1.83037016334557	0.51990333278248	1
Merged-chr6-145987351-1	chr6	145987251	145987451	+	551.0	f0_balb.idr	Intergenic	Intergenic	53229.0	NM_010656	16651.0	Mm.49689	NM_010656	ENSMUSG00000030255	Sspn	Krag	sarcospan	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-84366055-3	chr10	84366063	84366263	+	919.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	74308.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-16427614-4	chr8	16427512	16427712	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053171, intron 7 of 69)	ORR1E|LTR|ERVL-MaLR	-258774.0	NR_037214	100526464.0		NR_037214	ENSMUSG00000093142	Mir3106	mir-3106|mmu-mir-3106	microRNA 3106	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-68883203-4	chr9	68883114	68883314	+	926.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013646, intron 1 of 10)	intron (NM_013646, intron 1 of 10)	117868.0	NR_033299	320440.0	Mm.483129	NM_177159		9530091C08Rik	-	RIKEN cDNA 9530091C08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-74935472-4	chr9	74935334	74935534	+	963.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17446.0	NM_001359816	235493.0	Mm.208955	NM_153584	ENSMUSG00000034858	Fam214a	6330415I01Rik|AI553555|C130047D21Rik|Kiaa1370|mKIAA1370	family with sequence similarity 214, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-145194201-4	chr4	145194116	145194316	+	850.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276465, intron 1 of 69)	intron (NM_001276465, intron 1 of 69)	789.0	NM_001276465	230895.0	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-88106210-4	chr6	88106122	88106322	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_133933)	TTS (NM_133933)	-1964.0	NR_105795	102465196.0		NR_105795	ENSMUSG00000099095	Mir6376	Gm27778|mmu-mir-6376	microRNA 6376	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-98185425-4	chr5	98185306	98185506	+	895.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029947, exon 4 of 4)	exon (NM_029947, exon 4 of 4)	578.0	NR_153823	102637492.0	Mm.399020	NR_153823		A730035I17Rik	Gm34285	RIKEN cDNA A730035I17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-130428866-4	chr1	130428744	130428944	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151525, intron 2 of 3)	intron (NR_151525, intron 2 of 3)	-5801.0	NM_001317361	13137.0	Mm.436759	NM_007827	ENSMUSG00000026401	Cd55b	AI323748|Daf|Daf-TM|Daf2|TM-DAF	CD55 molecule, decay accelerating factor for complement B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-109737735-4	chr8	109737590	109737790	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080930)	promoter-TSS (NM_001080930)	49.0	NM_001080930	52335.0	Mm.276770	NM_001080930	ENSMUSG00000069895	Atxn1l	AW558552|Boat|C330011L24Rik|D6Mgi37|D8Ertd587e	ataxin 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-132811103-4	chr7	132810995	132811195	+	982.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_212473, intron 1 of 4)	intron (NM_212473, intron 1 of 4)	2101.0	NM_212473	77938.0	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-32566701-1	chr11	32566601	32566801	+	1000.0	f1_balb.idr	intron (NM_009288, intron 2 of 18)	intron (NM_009288, intron 2 of 18)	33435.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	-1.20406370813143	-1.56956373024278	-1.57884638916872	-1.58647144159385	-1.598104728449	-1.56755213932999	-1.57674499865798	-1.58510656085539	-1.70745470802464	0.626337835847419	1
Merged-chr7-102020500-2	chr7	102020400	102020600	+	677.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_029211, intron 8 of 8)	intron (NM_029211, intron 8 of 8)	-2345.0	NM_010531	16068.0	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-58488700-3	chr13	58488596	58488796	+	763.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-85353.0	NM_001301341	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165945953-2	chr2	165945853	165946053	+	730.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A2|LTR|ERVL-MaLR	-46684.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-75704215-2	chr7	75704115	75704315	+	588.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 16 of 36)	intron (NM_029332, intron 16 of 36)	-144123.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-38372171-4	chr18	38372073	38372273	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-33180.0	NM_011937	26384.0	Mm.22374	NM_011937	ENSMUSG00000052102	Gnpda1	GNPDA|Gnp1|Gnpi|oscillin	glucosamine-6-phosphate deaminase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-28171458-4	chr3	28171356	28171556	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER20|DNA|hAT-Charlie	-91758.0	NM_001163007	665113.0	Mm.126193	NM_026910	ENSMUSG00000027692	Tnik	1500031A17Rik|4831440I19Rik|AI451411|C530008O15Rik|C630040K21Rik	TRAF2 and NCK interacting kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64161037-4	chr5	64160997	64161197	+	917.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019636, intron 1 of 19)	intron (NM_019636, intron 1 of 19)	837.0	NM_001310611	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-145188020-3	chr7	145187919	145188119	+	735.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132643, intron 20 of 22)	intron (NR_132643, intron 20 of 22)	20100.0	NR_033626	100040049.0	Mm.102235	NR_033626	ENSMUSG00000109305	1810010D01Rik	Gm2572	RIKEN cDNA 1810010D01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-16250817-4	chr14	16250739	16250939	+	881.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362432, intron 1 of 11)	intron (NM_001362432, intron 1 of 11)	-1031.0	NM_027695	71147.0	Mm.197960	NM_027695	ENSMUSG00000021786	Oxsm	4933425A18Rik|C80494	3-oxoacyl-ACP synthase, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-91977035-2	chr5	91976937	91977137	+	572.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-10436.0	NM_001177577	381651.0	Mm.332494	NM_001177577	ENSMUSG00000096035	Odaph	Gm1045|Gm1045-a|Gm1045-b	odontogenesis associated phosphoprotein	protein-coding	0.939227994321273	0.689767555680847	1.15076663205479	0.988724962173087	1.41688074249268	0.691908906990637	1.16103718144459	1.12081162196566	0.845567175221482	0.558450262898011	0.960321604678676
Merged-chr18-80984232-3	chr18	80984132	80984332	+	721.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178280, intron 1 of 3)	intron (NM_178280, intron 1 of 3)	2346.0	NM_178280	20689.0	Mm.215917	NM_178280	ENSMUSG00000024565	Sall3	B130022O04Rik|Msal|Msal-1|Sal|Salt|Spalt	spalt like transcription factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-33762143-2	chr2	33762043	33762243	+	828.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175184, intron 7 of 9)	intron (NM_175184, intron 7 of 9)	-43673.0	NR_045729	320482.0	Mm.442057	NR_045729	ENSMUSG00000086484	Nron	A630071L07Rik|Gm24353	non-protein coding RNA, repressor of NFAT	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-33562485-4	chr17	33562393	33562593	+	956.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053214, intron 1 of 27)	intron (NM_053214, intron 1 of 27)	6786.0	NM_053214	17916.0	Mm.42019	NM_053214	ENSMUSG00000024300	Myo1f	C330006B10Rik	myosin IF	protein-coding	2.82891442828803	3.23961813535219	2.18946492164298	1.97377982961959	2.03184656102431	1.69688121091867	1.86330368333165	2.77629714104404	-1.03071001239063	0.237228384236651	0.733808141787246
Merged-chr8-122436233-2	chr8	122436133	122436333	+	631.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_028354, intron 9 of 10)	B1F|SINE|Alu	-3293.0	NM_007806	13057.0	Mm.271671	NM_007806	ENSMUSG00000006519	Cyba	b558|nmf333|p22-phox|p22phox	cytochrome b-245, alpha polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118159446-2	chr11	118159346	118159546	+	894.5833130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30227.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-29786363-3	chr5	29786262	29786462	+	952.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001037940, exon 10 of 10)	3' UTR (NM_001037940, exon 10 of 10)	-50426.0	NR_028426	332993.0	Mm.473746	NR_028426		Gm5129	EG332993	predicted gene 5129	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-80015882-2	chr15	80015752	80015952	+	642.966675	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1044.0	NM_011057	18591.0	Mm.144089	NM_011057	ENSMUSG00000000489	Pdgfb	PDGF-B|Sis	platelet derived growth factor, B polypeptide	protein-coding	-0.543664766931585	-0.532006365586127	0.0376075838321817	-0.538775426911995	-0.542937697421192	-0.531144531936576	-0.534985539388068	0.00551008014451421	-0.102522031902803	0.970916738380464	1
Merged-chr1-157446541-4	chr1	157446436	157446636	+	883.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12032.0	NM_001356418	226527.0	Mm.215960	NM_001033284	ENSMUSG00000033488	Cryzl2	-	crystallin zeta like 2	protein-coding	3.47969917014693	3.59929558691582	3.55706167652306	2.91598562839943	2.66718326430999	2.71347980913335	4.25131020171508	3.04114067691737	-0.0886806416471038	0.889341512287386	0.998431161219273
Merged-chr16-33991105-2	chr16	33991005	33991205	+	773.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177357, intron 53 of 59)	intron (NM_177357, intron 53 of 59)	-24067.0	NM_009471	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-61681885-2	chr10	61681785	61681985	+	648.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009120, intron 1 of 6)	B2_Mm2|SINE|B2	-1595.0	NR_126477	75539.0		NR_126477		1700022H01Rik	-	RIKEN cDNA 1700022H01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135615481-4	chr5	135615371	135615571	+	900.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-17183.0	NM_001357037	215160.0	Mm.295438	NM_031398	ENSMUSG00000039917	Rhbdd2	0610011L13Rik|AI480532|Rhbdl7|Usmg1	rhomboid domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-127243724-4	chr4	127243636	127243836	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030252)	promoter-TSS (NM_030252)	-48.0	NM_030252	80284.0	Mm.139607	NM_030252	ENSMUSG00000042380	Smim12	BC003266	small integral membrane protein 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-21078642-4	chr1	21078587	21078787	+	965.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177409, intron 1 of 10)	intron (NM_177409, intron 1 of 10)	538.0	NM_177409	170829.0	Mm.185680	NM_177409	ENSMUSG00000041779	Tram2	C330003D03Rik	translocating chain-associating membrane protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-44434833-4	chr10	44434714	44434914	+	955.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23934.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25719044-4	chr7	25718929	25719129	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028771)	promoter-TSS (NM_028771)	24.0	NM_028771	52132.0	Mm.278798	NM_028771	ENSMUSG00000002608	Ccdc97	1200014H14Rik|2810446P04Rik|AA545218|D7Ertd462e	coiled-coil domain containing 97	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-119605208-4	chr8	119605106	119605306	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021441)	promoter-TSS (NM_021441)	34.0	NM_021441	21341.0	Mm.41977	NM_021441	ENSMUSG00000031832	Taf1c	Tafi95|mTAFI95	TATA-box binding protein associated factor, RNA polymerase I, C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127228965-3	chr7	127228825	127229025	+	918.095215	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-4136.0	NM_001360912	233887.0	Mm.258371	NM_146201	ENSMUSG00000045598	Zfp553	2600009K23Rik|AI431057|BC026401|C330013F15Rik|Znf48	zinc finger protein 553	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80352926-2	chr10	80352826	80353026	+	548.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 1 of 4)	intron (NR_038088, intron 1 of 4)	-3533.0	NM_183152	216166.0	Mm.17613	NM_183152	ENSMUSG00000035486	Plk5	6330514A18Rik	polo like kinase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-84349159-2	chr13	84349053	84349253	+	582.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	126857.0	NM_175187	72745.0	Mm.295063	NM_175187	ENSMUSG00000035762	Tmem161b	2810446P07Rik|AI843389	transmembrane protein 161B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-104781717-4	chr3	104781566	104781766	+	814.895813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027982, intron 1 of 9)	CpG	610.0	NM_027982	71887.0	Mm.379204	NM_027982	ENSMUSG00000002228	Ppm1j	2310008J22Rik|PP2Czeta|Ppp2cz	protein phosphatase 1J	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44235916-2	chr9	44235816	44236016	+	824.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1870.0	NM_007619	12402.0	Mm.266871	NM_007619	ENSMUSG00000034342	Cbl	4732447J05Rik|Cbl-2|c-Cbl|cbl	Casitas B-lineage lymphoma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-45455786-3	chr13	45455695	45455895	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-51649.0	NM_025508	66355.0	Mm.290802	NM_025508	ENSMUSG00000000253	Gmpr	2310004P21Rik|AV028449|GMPR 1	guanosine monophosphate reductase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117326419-4	chr11	117326307	117326507	+	960.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113486, intron 3 of 11)	intron (NM_001113486, intron 3 of 11)	-5308.0	NM_017380	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-11787930-2	chr11	11787870	11788070	+	675.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	20992.0	NM_021891	60530.0	Mm.236114	NM_021891	ENSMUSG00000035455	Fignl1	-	fidgetin-like 1	protein-coding	1.2542967552809	0.835521813937127	1.61987399298837	1.56683528772999	1.13119303970348	0.838979933065789	2.00709294556422	1.01684559345744	-0.016771347984061	0.990001611873066	0.998431161219273
Merged-chr2-167760177-4	chr2	167760083	167760283	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	69006.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-125114857-4	chr4	125114745	125114945	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13036.0	NM_153159	230738.0	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	4.17873800910141	4.07943219486836	3.87602920110795	4.14031668793266	4.12018294869576	4.57317727466213	3.9768642205313	3.25962967396099	-0.0251650682287392	0.956496228865892	0.998431161219273
Merged-chr8-85298709-4	chr8	85298612	85298812	+	966.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019716)	promoter-TSS (NM_019716)	785.0	NM_022997	65114.0	Mm.296520	NM_022997	ENSMUSG00000031696	Vps35	AI647796|Mem3	VPS35 retromer complex component	protein-coding	4.00500071964642	4.88703475995404	4.82272766346587	4.528443436601	4.20036214039895	5.00388976307394	5.00979666838744	4.5953523124583	0.174014044412352	0.65195097595593	0.986416236213275
Merged-chr7-26264052-3	chr7	26263956	26264156	+	690.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2775.0	NM_001167540	100312477.0	Mm.480246	NM_001167540	ENSMUSG00000046130	Vmn1r184	-	vomeronasal 1 receptor, 184	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-85544835-1	chr1	85544735	85544935	+	718.0	f1_balb.idr	Intergenic	Intergenic	53975.0	NM_030194	109032.0	Mm.335802	NM_030194	ENSMUSG00000070034	Sp110	5031415C07Rik|52kDa|5830484A20Rik|Ifi75|Ipr1	Sp110 nuclear body protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-43919946-3	chr13	43919845	43920045	+	884.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	134833.0	NM_001289915	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-84120729-2	chr17	84120629	84120829	+	921.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1G1|LTR|ERVL-MaLR	42069.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-113478648-3	chr2	113478550	113478750	+	905.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285459, intron 2 of 16)	intron (NM_001285459, intron 2 of 16)	37586.0	NM_001285459	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	4.02128701845353	4.04015880654879	4.04590218141947	4.22519716515674	4.80036444242088	4.14153605533152	4.00867595767036	3.8883089557541	0.249021476229238	0.566430063252626	0.962337567106345
Merged-chr8-124751810-3	chr8	124751712	124751912	+	879.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081120)	promoter-TSS (NM_001081120)	-3.0	NM_001081120	69627.0	Mm.271600	NM_001081120	ENSMUSG00000043068	Fam89a	2310031A18Rik	family with sequence similarity 89, member A	protein-coding	1.49751999922984	1.00079612492903	1.35478961578107	1.57765876843702	1.27266451841584	1.561286092406	1.85136810194175	1.58586476859367	0.747528416941126	0.524019287386802	0.948197779519432
Merged-chr2-84758925-4	chr2	84758822	84759022	+	772.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16507.0	NM_009776	12258.0	Mm.38888	NM_009776	ENSMUSG00000023224	Serping1	C1INH|C1nh	serine (or cysteine) peptidase inhibitor, clade G, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-110416409-2	chr12	110416309	110416509	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-30770.0	NM_001135001	26931.0	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-37112894-4	chr10	37112787	37112987	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26039.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-50065617-1	chr18	50065517	50065717	+	724.0	f1_c57bl6.idr	intron (NM_134131, intron 1 of 1)	MTD|LTR|ERVL-MaLR	-11955.0	NR_155293	102635912.0	Mm.440627	NR_155293		C030005K06Rik	-	RIKEN cDNA C030005K06 gene	ncRNA	2.65865398431934	1.837648462077	0.969098054230836	0.948200779594217	1.95715760561219	2.2308049872746	1.45034700628613	0.951904875091723	-0.233309958829573	0.855388759922797	0.998431161219273
Merged-chr4-135434257-2	chr4	135434157	135434357	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022980)	promoter-TSS (NM_022980)	-452.0	NM_022980	53902.0	Mm.331970	NM_022980	ENSMUSG00000059713	Rcan3	AU041093|Csp3|Dscr1l2	regulator of calcineurin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-66598575-2	chr9	66598475	66598675	+	583.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5460.0	NM_001302116	235441.0	Mm.32465	NM_144937	ENSMUSG00000032376	Usp3	AA409661|BC017156	ubiquitin specific peptidase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120437457-4	chr8	120437353	120437553	+	917.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51413.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-97799833-3	chr7	97799760	97799960	+	818.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357364, intron 1 of 14)	intron (NM_001357364, intron 1 of 14)	11319.0	NM_001357364	18479.0	Mm.260227	NM_011035	ENSMUSG00000030774	Pak1	AW045634|PAK-1|Paka	p21 (RAC1) activated kinase 1	protein-coding	2.17444539970015	2.21826930569098	2.61506019636401	1.66796500938442	1.75202490655048	2.10191326374998	2.16044479148149	1.48983118899557	-0.819332889524456	0.384420468967938	0.875517558686467
Merged-chr3-28543810-4	chr3	28543719	28543919	+	786.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026910, intron 7 of 32)	intron (NM_026910, intron 7 of 32)	123876.0	NR_130342	100628591.0		NR_130342	ENSMUSG00000092990	Mir466q	Mir446q|mmu-mir-466q|mu-mir-446q	microRNA 466q	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-69502129-4	chr12	69502024	69502224	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26574.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	6.12394761872088	6.26846484386833	5.82957756666076	5.88745357121382	5.88341226962361	6.12102993624088	5.79558590046082	5.6468833949392	-0.186410274824602	0.432421841149332	0.904679012727573
Merged-chr6-72551370-2	chr6	72551270	72551470	+	590.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271395, intron 1 of 9)	intron (NM_001271395, intron 1 of 9)	1723.0	NM_001271395	12332.0	Mm.18626	NM_007599	ENSMUSG00000056737	Capg	gCap39|mbh1	capping protein (actin filament), gelsolin-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-25983442-4	chr2	25983334	25983534	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001276361)	promoter-TSS (NM_001276361)	-152.0	NM_001276361	227634.0	Mm.36834	NM_001115076	ENSMUSG00000026933	Camsap1	9530003A05Rik|C77823|PRO2405	calmodulin regulated spectrin-associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-82029419-3	chr3	82029310	82029510	+	721.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32488.0	NM_021370	58170.0	Mm.88839	NM_021370	ENSMUSG00000028008	Asic5	Accn5|Blinac|Inac	acid-sensing (proton-gated) ion channel family member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-97534030-3	chr13	97533911	97534111	+	699.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25989.0	NR_046157	328314.0	Mm.138047	NR_046157	ENSMUSG00000110235	Gm5086	B230311A21|EG328314	predicted gene 5086	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-75856551-2	chr12	75856451	75856651	+	788.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001005510, intron 2 of 115)	intron (NM_001005510, intron 2 of 115)	38233.0	NM_001005510	319565.0	Mm.26652	NM_001005510	ENSMUSG00000063450	Syne2	6820443O06Rik|AW546258|Cpfl8|D12Ertd777e|KASH2|NUA|Nesp2g|dice|mKIAA1011	spectrin repeat containing, nuclear envelope 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-34314605-3	chr14	34314508	34314708	+	754.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008133, intron 1 of 12)	intron (NM_008133, intron 1 of 12)	3881.0	NM_008133	14661.0	Mm.10600	NM_008133	ENSMUSG00000021794	Glud1	AI118167|Gdh-X|Glud|Gludl	glutamate dehydrogenase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135972102-4	chr4	135972000	135972200	+	868.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011942, intron 1 of 9)	intron (NM_011942, intron 1 of 9)	494.0	NM_011942	26394.0	Mm.34302	NM_011942	ENSMUSG00000028670	Lypla2	LysoII	lysophospholipase 2	protein-coding	1.01228776649108	0.589190301253866	0.57631718975236	0.769734160601987	0.88991558594786	1.66325125975549	0.579178488295853	1.60803213374057	2.33733268314348	0.134711119318468	0.573143265809566
Merged-chr16-76325130-1	chr16	76325030	76325230	+	550.0	f0_balb.idr	intron (NM_001358238, intron 3 of 3)	intron (NM_001358238, intron 3 of 3)	47919.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-41600508-2	chr3	41600388	41600588	+	774.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001130184, intron 7 of 10)	intron (NM_001130184, intron 7 of 10)	35608.0	NM_001130186	269424.0	Mm.286285	NM_172303	ENSMUSG00000025764	Jade1	AU041499|D530048A03Rik|Phf17|mKIAA1807	jade family PHD finger 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-16781037-4	chr19	16780926	16781126	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173028)	promoter-TSS (NM_173028)	-93.0	NM_173028	271564.0	Mm.211963	NM_173028	ENSMUSG00000046230	Vps13a	4930425F11|4930516E05Rik|4930543C13Rik|9930023P20|Chac|Chorein|D330038K10Rik|mKIAA0986	vacuolar protein sorting 13A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-47687783-3	chr9	47687657	47687857	+	806.955566	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	130451.0	NR_046048	100038460.0	Mm.447649	NR_046048		Gm10677	-	predicted gene 10677	ncRNA	2.31337893283798	2.16714724244691	0.735972156171062	0.714666316490704	0.930261721546273	2.45664604432969	0.741908792274973	0.71845114868263	-0.533644947330625	0.83448345068011	0.998431161219273
Merged-chr7-112103140-4	chr7	112103056	112103256	+	820.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133758, intron 22 of 27)	intron (NM_133758, intron 22 of 27)	55540.0	NM_001360260	50781.0	Mm.55143	NM_015814	ENSMUSG00000030772	Dkk3	AW061014|C87148|dkk-3|mDkk-3	dickkopf WNT signaling pathway inhibitor 3	protein-coding	2.56261839110902	1.37489674107596	1.98762452169189	2.32905392632633	1.84891100861997	2.98215826384366	2.00317107902309	2.79358492067723	0.780184855924629	0.396343260767013	0.883276804275027
Merged-chr15-78875611-1	chr15	78875511	78875711	+	723.0	f1_c57bl6.idr	Intergenic	Intergenic	-1579.0	NM_145929	106039.0	Mm.251331	NM_145929	ENSMUSG00000033128	Gga1	4930406E12Rik|AU016030|AW209092	golgi associated, gamma adaptin ear containing, ARF binding protein 1	protein-coding	1.47156354255574	0.835261916599456	1.61604810624073	2.05721481851711	1.12955365412599	1.07550727927997	1.04361157802572	1.0157465222255	-2.0034735227361	0.12256812959534	0.548721051822719
Merged-chr3-116613961-4	chr3	116613867	116614067	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001289571, exon 7 of 16)	exon (NM_001289571, exon 7 of 16)	620.0	NM_030016	229780.0	Mm.259648	NM_030016	ENSMUSG00000033439	Trmt13	4631408H19Rik|A330067P21|A930028L21Rik|Ccdc76	tRNA methyltransferase 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-118677512-2	chr2	118677412	118677612	+	800.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145854, intron 1 of 9)	CpG	266.0	NM_001145854	214230.0	Mm.241857	NM_001033254	ENSMUSG00000074923	Pak6	4732456M09	p21 (RAC1) activated kinase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5202058-3	chr17	5201957	5202157	+	711.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 4 of 19)	intron (NM_001085355, intron 4 of 19)	206983.0	NM_001085355	239985.0	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-12005700-4	chr19	12005617	12005817	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31023.0	NM_146680	258675.0	Mm.271517	NM_146680	ENSMUSG00000067529	Olfr1423	MOR239-3	olfactory receptor 1423	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-103971111-3	chr2	103970976	103971176	+	792.0476070000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142336, intron 2 of 3)	intron (NM_001142336, intron 2 of 3)	789.0	NM_001142335	16909.0	Mm.29266	NM_008505	ENSMUSG00000032698	Lmo2	Rbtn-2|Rbtn2|Rhom-2|Ttg2	LIM domain only 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-104509638-4	chr5	104509529	104509729	+	742.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166581, intron 1 of 1)	URR1B|DNA|hAT-Charlie	1277.0	NM_001166581	100042165.0	Mm.482189	NM_001166581	ENSMUSG00000079065	BC005561	-	cDNA sequence BC005561	protein-coding	3.44566557905603	4.25846303503633	4.12578718804423	3.83951440828447	3.39866031080563	3.81005710191043	4.26298214067155	3.20233040876397	-0.31001727965861	0.539403037915189	0.954403851908463
Merged-chr2-122569656-4	chr2	122569590	122569790	+	843.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41587.0	NM_025961	67092.0	Mm.29975	NM_025961	ENSMUSG00000027199	Gatm	1810003P21Rik|AI314789|AT	glycine amidinotransferase (L-arginine:glycine amidinotransferase)	protein-coding	3.82928688529012	4.62255888866731	4.66264483597743	4.58623708525244	4.08723592831775	4.31552865518724	4.60709170091733	3.69401532112526	-0.321505357811004	0.448799933656253	0.915206885694556
Merged-chr17-81615462-2	chr17	81615362	81615562	+	573.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 2 of 8)	intron (NR_104580, intron 2 of 8)	122925.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-170127920-2	chr2	170127820	170128020	+	738.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159683, intron 2 of 6)	intron (NM_001159683, intron 2 of 6)	3300.0	NM_001033299	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-17455360-3	chr12	17455259	17455459	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2c|LINE|L2	-89514.0	NM_013614	18263.0	Mm.34102	NM_013614	ENSMUSG00000011179	Odc1	ODC	ornithine decarboxylase, structural 1	protein-coding	4.25758921024755	3.57470762840609	4.86011114303016	5.49362239636205	4.19303332025285	5.04277897293453	4.47685737728813	4.97674529690433	-0.0255565268953866	0.954320788415872	0.998431161219273
Merged-chr11-88070643-3	chr11	88070542	88070742	+	792.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016686, intron 1 of 5)	intron (NM_016686, intron 1 of 5)	2363.0	NM_016686	22344.0	Mm.46628	NM_016686	ENSMUSG00000018377	Vezf1	AI848691|AW046909|db1	vascular endothelial zinc finger 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-55660466-4	chr3	55660352	55660552	+	994.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030595, intron 49 of 57)	intron (NM_030595, intron 49 of 57)	-122058.0	NM_010750	17116.0	Mm.440209	NM_010750	ENSMUSG00000056947	Mab21l1	AW047968	mab-21-like 1 (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-60081250-4	chr10	60081173	60081373	+	786.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026937, intron 9 of 10)	intron (NM_026937, intron 9 of 10)	-24984.0	NM_052994	94214.0	Mm.153429	NM_052994	ENSMUSG00000058297	Spock2	AA407235|Gcap26|mKIAA0275	sparc/osteonectin, cwcv and kazal-like domains proteoglycan 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-138392867-4	chr7	138392750	138392950	+	991.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183289, intron 3 of 11)	intron (NM_183289, intron 3 of 11)	4880.0	NM_183289	70571.0	Mm.334297	NM_183289	ENSMUSG00000091002	Tcerg1l	5730476P14Rik	transcription elongation regulator 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-43224384-3	chr1	43224278	43224478	+	718.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27617.0	NM_001289533	14200.0	Mm.6799	NM_010212	ENSMUSG00000008136	Fhl2	FHL-2|SLIM-3|SLIM3	four and a half LIM domains 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-29976708-2	chr16	29976608	29976808	+	544.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_037689, intron 1 of 5)	(TG)n|Simple_repeat|Simple_repeat	2416.0	NR_037689	328657.0	Mm.425982	NM_001033403		Gm1968	-	predicted gene 1968	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-46142295-1	chr6	46142195	46142395	+	717.0	f0_balb.idr	intron (NM_001004357, intron 8 of 23)	ID_B1|SINE|B4	1082234.0	NM_001004357	66797.0	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-120114736-2	chr10	120114636	120114836	+	757.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-1771.0	NM_080446	117599.0	Mm.214703	NM_080446	ENSMUSG00000020228	Helb	AI447783|D10Ertd664e	helicase (DNA) B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-25500722-4	chr2	25500617	25500817	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027062)	promoter-TSS (NM_027062)	-33.0	NM_001356407	30839.0	Mm.29170	NM_013908	ENSMUSG00000015095	Fbxw5	AI159739|Fbw5	F-box and WD-40 domain protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-112928161-2	chr13	112928061	112928261	+	866.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028151)	promoter-TSS (NM_028151)	368.0	NM_172594	218629.0	Mm.35094	NM_172594	ENSMUSG00000042426	Dhx29	3732415M03|AU043276|Ddxx|E130202M19Rik	DEAH (Asp-Glu-Ala-His) box polypeptide 29	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115152482-2	chr11	115152382	115152582	+	839.785706	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163753, intron 2 of 8)	MLT1C|LTR|ERVL-MaLR	-1696.0	NM_021411	58222.0	Mm.143789	NM_021411	ENSMUSG00000020732	Rab37	B230331O03Rik|B230354I04Rik	RAB37, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-151210558-4	chr5	151210480	151210680	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20387.0	NR_153382	243362.0	Mm.209272	NM_146258	ENSMUSG00000016128	Stard13	DLC2|GT650	StAR-related lipid transfer (START) domain containing 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55774999-4	chr19	55774911	55775111	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001331146, intron 4 of 14)	intron (NM_001331146, intron 4 of 14)	33201.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	2.29602086647179	2.70686017595843	2.0094811914501	3.215122888717	2.63262781865445	2.72681403753188	2.20941971067641	3.29253188319917	0.260715861418926	0.73511993278086	0.998431161219273
Merged-chr11-97800178-4	chr11	97800050	97800250	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010688, intron 1 of 6)	CpG	585.0	NM_010688	16796.0	Mm.271967	NM_010688	ENSMUSG00000038366	Lasp1	AA408629|Def-4|LASP-1|MLN 50|SH3P6|Tg(Col1a1-lacZ)1Ngma	LIM and SH3 protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-15196390-2	chr3	15196290	15196490	+	726.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	135912.0	NM_001076679	751864.0	Mm.431296	NM_001076679	ENSMUSG00000078783	Gm9733	-	predicted gene 9733	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-136813311-3	chr6	136813221	136813421	+	870.955566	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_021714)	TTS (NM_021714)	5073.0	NM_177688	232440.0	Mm.154564	NM_177688	ENSMUSG00000060032	H2afj	E130307C13	H2A histone family, member J	protein-coding	3.05205053564918	4.0589645830896	4.61934307583585	3.45890141413868	3.83598682807386	4.16526879923924	5.94983376299136	4.87311125568976	1.31182606225046	0.0144368923396729	0.141344696481133
Merged-chr18-62164523-7	chr18	62164382	62164582	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER103C|DNA|hAT-Charlie	15499.0	NM_007420	11555.0	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118250778-2	chr11	118250678	118250878	+	850.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-2186.0	NM_011180	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-3331803-1	chr2	3331703	3331903	+	541.0	f1_c57bl6.idr	intron (NM_001013376, intron 1 of 1)	intron (NM_001013376, intron 1 of 1)	825.0	NM_001013376	227522.0	Mm.293948	NM_001013376	ENSMUSG00000049950	Rpp38	C330006A15Rik	ribonuclease P/MRP 38 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-97386357-3	chr1	97386253	97386453	+	673.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-258050.0	NM_028942	74441.0	Mm.60362	NM_028942	ENSMUSG00000026331	Slco6c1	4933404A18Rik|C79179	solute carrier organic anion transporter family, member 6c1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-95049401-4	chr4	95049324	95049524	+	910.275024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010591, exon 1 of 1)	3' UTR (NM_010591, exon 1 of 1)	2798.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-92791561-2	chr13	92791461	92791661	+	601.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011582, intron 1 of 21)	intron (NM_011582, intron 1 of 21)	3257.0	NM_011582	21828.0	Mm.20865	NM_011582	ENSMUSG00000021702	Thbs4	TSP4	thrombospondin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-103979611-4	chr11	103979521	103979721	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007477, intron 3 of 4)	intron (NM_007477, intron 3 of 4)	12750.0	NM_007477	11841.0	Mm.5061	NM_007477	ENSMUSG00000062421	Arf2	-	ADP-ribosylation factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-69240672-3	chr10	69240530	69240730	+	772.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252638, intron 2 of 11)	intron (NM_001252638, intron 2 of 11)	27436.0	NM_001252638	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-94498220-4	chr16	94498140	94498340	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007834, exon 8 of 8)	3' UTR (NM_007834, exon 8 of 8)	28389.0	NM_007834	13185.0	Mm.7472	NM_007834	ENSMUSG00000022898	Dscr3	AW538125|Dcra	DSCR3 arrestin fold containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-136144878-4	chr4	136144760	136144960	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008321, intron 2 of 2)	CpG-10505	1038.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	5.70239432472017	6.21147568402416	5.66560107866037	4.75972223276204	5.966248188459	6.30498041380494	6.26598647301104	5.27038643414694	0.371540884678438	0.243273072123138	0.740751247850617
Merged-chr5-25528747-2	chr5	25528647	25528847	+	829.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1271.0	NR_027388	73571.0	Mm.105263	NR_027388	ENSMUSG00000101856	1700096K18Rik	-	RIKEN cDNA 1700096K18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-4603633-2	chr2	4603533	4603733	+	794.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001347086, exon 22 of 25)	exon (NM_001347086, exon 22 of 25)	43879.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-51497522-3	chr10	51497318	51497518	+	644.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_013532)	TTS (NM_013532)	6520.0	NM_013532	14728.0	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133879370-3	chr4	133879244	133879444	+	757.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009097, intron 2 of 21)	intron (NM_009097, intron 2 of 21)	-4613.0	NM_001285506	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	2.29619857610648	2.46780331306221	2.26653387597752	2.20292641870572	1.98750838921994	1.88335588889077	1.61794755394425	3.02751770145359	-0.0730708251073667	0.934881671073931	0.998431161219273
Merged-chr11-31850549-4	chr11	31850458	31850658	+	913.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-20382.0	NM_001290676	67579.0	Mm.339792	NM_026252	ENSMUSG00000020300	Cpeb4	Cpe-bp4|Cpeb-4|mCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding	0.689562608373295	1.0556962906971	0.614282805765998	0.596203184021746	0.906101597892239	0.945365605193587	0.439373081432867	0.433059794513032	-0.252031841015491	0.876998305941725	1
Merged-chr8-123064608-2	chr8	123064508	123064708	+	646.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153176)	promoter-TSS (NM_153176)	-900.0	NM_153176	234847.0	Mm.292075	NM_153176	ENSMUSG00000000738	Spg7	AI452278|AU015315|Cmar|PGN	SPG7, paraplegin matrix AAA peptidase subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-28713384-1	chr12	28713284	28713484	+	698.5	f0_balb.idr	intron (NM_001161410, intron 5 of 11)	intron (NM_001161410, intron 5 of 11)	34059.0	NR_105902	102465980.0		NR_105902	ENSMUSG00000098579	Mir6937	Gm27448|mmu-mir-6937	microRNA 6937	ncRNA	-0.181584291154345	0.186415531315475	-0.563955759460402	-0.567066044041013	-0.57146793092527	-0.559023612987217	-0.563067329362004	-0.56652240576314	-3.47808267786897	0.200928966268721	1
Merged-chr3-142759554-1	chr3	142759454	142759654	+	744.0	f1_c57bl6.idr	Intergenic	Intergenic	-5693.0	NM_145546	229906.0	Mm.271756	NM_145546	ENSMUSG00000028271	Gtf2b	-	general transcription factor IIB	protein-coding	-0.267535466421297	-0.203735528214434	-0.40357697502264	-0.406808328603849	-0.263499822506878	0.339001035878549	-0.402653119623123	-0.406243859501481	1.83502752248533	0.441028223194818	1
Merged-chr17-71187906-3	chr17	71187775	71187975	+	857.2777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022882, intron 1 of 19)	intron (NM_022882, intron 1 of 19)	3897.0	NM_022882	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41054862-3	chr19	41054753	41054953	+	752.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001043228, intron 9 of 10)	intron (NM_001043228, intron 9 of 10)	22260.0	NM_153520	226115.0	Mm.54119	NM_153520	ENSMUSG00000050121	Opalin	Tmem10|Tmp10	oligodendrocytic myelin paranodal and inner loop protein	protein-coding	1.88989202015622	1.15847610708721	1.38750032319122	2.0003067994778	1.90686532301941	2.283766790007	1.3976680526608	2.99601009206068	1.5743998810596	0.133938653898046	0.571666672850202
Merged-chr3-107819298-3	chr3	107819214	107819414	+	945.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB8|LINE|L1	-57916.0	NM_133867	99662.0	Mm.108491	NM_133867	ENSMUSG00000040600	Eps8l3	AI504489|Eps8r3	EPS8-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-57114657-2	chr2	57114557	57114757	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001139509, intron 1 of 7)	CpG	381.0	NM_013613	18227.0	Mm.3507	NM_013613	ENSMUSG00000026826	Nr4a2	HZF-3|NOT|Nurr1|RNR-1|TINOR|TINUR	nuclear receptor subfamily 4, group A, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78771928-4	chr15	78771834	78772034	+	899.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008595, intron 1 of 7)	intron (NM_008595, intron 1 of 7)	1511.0	NM_008595	17305.0	Mm.149235	NM_008595	ENSMUSG00000018169	Mfng	AW546563	MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135286999-4	chr4	135286914	135287114	+	893.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14254.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-108357205-2	chr2	108357105	108357305	+	578.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1VL1|LINE|L1	921085.0	NM_029790	76894.0	Mm.330451	NM_029790	ENSMUSG00000057234	Mettl15	0610027B03Rik|AI303697|AW049952|Mett5d1	methyltransferase like 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134130926-1	chr6	134130826	134131026	+	602.0	f1_c57bl6.idr	intron (NM_001303102, intron 2 of 8)	intron (NM_001303102, intron 2 of 8)	95226.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	-0.114729966761291	-0.495995186701762	-0.500288253408933	-0.503607522593699	-0.508308777609017	-0.495028873849818	0.308031443556289	-0.503027206757302	1.39236649799336	0.611914747192908	1
Merged-chr7-96411051-1	chr7	96410951	96411151	+	606.0	f0_balb.idr	intron (NM_011858, intron 2 of 32)	LTR85c|LTR|Gypsy?	-69087.0	NR_046043	670727.0	Mm.421352	NR_046043	ENSMUSG00000085751	Gm15412	-	predicted gene 15412	ncRNA	-0.773269170465148	-0.536731853074065	-1.03283113491845	-1.03706869426034	-1.03996662017948	-1.01870368359699	-1.03020260335842	-1.0367099657609	-2.78541583542897	0.373634043026092	1
Merged-chr17-10317397-4	chr17	10317307	10317507	+	814.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021881, intron 1 of 6)	intron (NM_021881, intron 1 of 6)	1954.0	NM_021881	19317.0	Mm.130694	NM_021881	ENSMUSG00000062078	Qk	1110003F05Rik|1500005P18|QkI|l(17)-1Wis|l17Wis1	quaking	protein-coding	1.45022023230701	1.82412543597419	2.77456197727098	1.32618283948724	1.46266386633824	1.8386936312726	2.79760536900378	1.33274767377186	0.0400404065166313	0.969947905461192	0.998431161219273
Merged-chr3-90248081-4	chr3	90247987	90248187	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013901)	promoter-TSS (NM_013901)	-105.0	NM_013901	30791.0	Mm.294709	NM_013901	ENSMUSG00000052310	Slc39a1	Zip1|Zirtl	solute carrier family 39 (zinc transporter), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-102898862-4	chr2	102898789	102898989	+	983.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039150, intron 1 of 13)	intron (NM_001039150, intron 1 of 13)	2776.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	3.85006429476062	2.51637781659195	3.55802332499996	4.94428966999555	4.45339226495118	4.06711091696333	4.70719942968576	5.08268358531367	0.810122042490913	0.126714374141074	0.55689342891744
Merged-chr10-80368617-2	chr10	80368517	80368717	+	897.166626	f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 1 of 4)	intron (NR_038088, intron 1 of 4)	1020.0	NR_038088	100568459.0		NR_038088	ENSMUSG00000115783	Bc1	Gm24367	brain cytoplasmic RNA 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-112323893-2	chr5	112323785	112323985	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2484.0	NM_018783	54723.0	Mm.172947	NM_018783	ENSMUSG00000029345	Tfip11	2810002G02Rik|AF097181|AW046167|Srr1|TIP33|Tip39	tuftelin interacting protein 11	protein-coding	1.07368159483093	2.4872948522794	1.16244279703577	2.38505739398715	1.55702574028151	1.21187712226078	1.38141888804714	0.891901129632481	-1.95204273044595	0.105530831914097	0.506967121584593
Merged-chr2-129502847-1	chr2	129502747	129502947	+	625.5	f0_balb.idr	intron (NM_177653, intron 1 of 6)	RLTR18-int|LTR|ERVK	33755.0	NM_177653	228592.0	Mm.452175	NM_177653	ENSMUSG00000043727	F830045P16Rik	Sirpb3	RIKEN cDNA F830045P16 gene	protein-coding	2.22362738003205	2.71132581561614	2.12612191100514	2.07436137676493	2.24065661885573	2.99505138028331	2.41784520989515	2.82361644556072	0.787322136583448	0.318940077817036	0.821951596143819
Merged-chr8-70635200-1	chr8	70635100	70635300	+	585.0	f1_c57bl6.idr	Intergenic	RMER4B|LTR|ERVK	-2744.0	NM_001330687	23886.0	Mm.31325	NM_011819	ENSMUSG00000038508	Gdf15	MIC-1|NAG-1|SBF	growth differentiation factor 15	protein-coding	1.65618914317125	2.21630390910204	1.07383476690075	1.97425169723288	1.67021412687295	2.23399620271048	1.07874950916324	1.62144366673793	-0.230164049583687	0.842307806661029	0.998431161219273
Merged-chr19-10692024-2	chr19	10691924	10692124	+	733.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361958, intron 1 of 4)	intron (NM_001361958, intron 1 of 4)	3289.0	NM_001361959	107305.0	Mm.19091	NM_181403	ENSMUSG00000048832	Vps37c	5730409F24Rik|AU042646	vacuolar protein sorting 37C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-11554031-2	chr8	11553906	11554106	+	770.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1756.0	NM_001302458	26356.0	Mm.25709	NM_011919	ENSMUSG00000045969	Ing1	2610028J21Rik|AA407184|AI875420|mING1h|p33Ing1|p37Ing1b	inhibitor of growth family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-131853723-2	chr4	131853623	131853823	+	557.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_025297, exon 2 of 10)	exon (NM_025297, exon 2 of 10)	10252.0	NM_025297	26922.0	Mm.192706	NM_025297	ENSMUSG00000028910	Mecr	AI195831|NRBF-1|Nrbf1	mitochondrial trans-2-enoyl-CoA reductase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-136285504-4	chr4	136285403	136285603	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009557)	promoter-TSS (NM_009557)	-564.0	NM_009557	22704.0	Mm.1504	NM_009557	ENSMUSG00000051351	Zfp46	AI426962|Mlz-4|Zfp-46|Znf436	zinc finger protein 46	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-6376741-4	chr4	6376624	6376824	+	890.033325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001098227, intron 1 of 8)	intron (NM_001098227, intron 1 of 8)	11044.0	NM_001098227	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	0.7796782891785	0.335634150475648	0.329103533267772	0.847017049967372	0.789863455810313	0.337106788872536	0.330543593231597	0.853958768946888	0.0348087015660768	0.98532658120847	1
Merged-chr19-29940443-4	chr19	29940298	29940498	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360725, intron 2 of 8)	intron (NM_001360725, intron 2 of 8)	-5392.0	NM_001164724	77125.0	Mm.182359	NM_133775	ENSMUSG00000024810	Il33	9230117N10Rik|Il-33|Il1f11|NF-HEV	interleukin 33	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-42118716-4	chr10	42118609	42118809	+	936.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-100327.0	NM_001034858	213402.0	Mm.211320	NM_001034858	ENSMUSG00000071324	Armc2	2610018I05Rik	armadillo repeat containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-47633660-2	chr6	47633560	47633760	+	801.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	21434.0	NR_002841	19799.0		NR_002841		Rn4.5s	-	4.5S RNA	rRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118145349-2	chr11	118145249	118145449	+	759.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-16130.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-78138455-4	chr18	78138350	78138550	+	912.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001171011, intron 1 of 8)	intron (NM_001171011, intron 1 of 8)	3669.0	NM_001171011	108052.0	Mm.33832	NM_028122	ENSMUSG00000059336	Slc14a1	2610507K20Rik|3021401A05Rik|UT-B|Utb1	solute carrier family 14 (urea transporter), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-30913550-2	chr5	30913450	30913650	+	659.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133918)	promoter-TSS (NM_133918)	-236.0	NM_133918	100952.0	Mm.286375	NM_133918	ENSMUSG00000029163	Emilin1	5830419M17Rik|AW229038|BB105748|EMILIN-1|gp115	elastin microfibril interfacer 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-119163339-4	chr2	119163234	119163434	+	905.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4454.0	NM_177157	320415.0	Mm.86373	NM_177157	ENSMUSG00000046814	Gchfr	2010323F13Rik|GFRP|P35	GTP cyclohydrolase I feedback regulator	protein-coding	2.74272202916881	2.71687104463114	1.8748466766459	2.99419604884701	3.42728206131116	2.99918792027491	4.00739150784187	2.80470632227038	1.2948900483045	0.0601731845610676	0.36309990136288
Merged-chr10-20040916-4	chr10	20040846	20041046	+	901.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008580, intron 7 of 29)	MTD|LTR|ERVL-MaLR	106420.0	NM_008580	26408.0	Mm.6595	NM_008580	ENSMUSG00000071369	Map3k5	7420452D20Rik|ASK|ASK1|MAPKKK5|Mekk5	mitogen-activated protein kinase kinase kinase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95708444-2	chr3	95708344	95708544	+	699.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RodERV21-int|LTR|ERV1	-20527.0	NM_001301705	229595.0	Mm.490574	NM_144899	ENSMUSG00000015850	Adamtsl4	ADAMTSL-4|Tsrc1	ADAMTS-like 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-113787152-2	chr5	113787052	113787252	+	954.8000490000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13200.0	NM_146162	231633.0	Mm.41681	NM_146162	ENSMUSG00000054675	Tmem119	AW208946|BC025600|obif	transmembrane protein 119	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19315421-2	chr7	19315321	19315521	+	838.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-5376.0	NM_001347586	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-139110245-4	chr3	139110141	139110341	+	991.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35040.0	NM_001356388	229877.0	Mm.28893	NM_145544	ENSMUSG00000028149	Rap1gds1	BC011279|GDS1	RAP1, GTP-GDP dissociation stimulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-11676850-1	chr16	11676750	11676950	+	619.0	f0_c57.idr	intron (NM_028964, intron 18 of 20)	intron (NM_028964, intron 18 of 20)	-102852.0	NR_126430	73761.0	Mm.39183	NR_126430		4833415N18Rik	-	RIKEN cDNA 4833415N18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-91290735-3	chr15	91290629	91290829	+	818.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033633, intron 7 of 9)	intron (NM_001033633, intron 7 of 9)	-98722.0	NM_001358967	26874.0	Mm.295456	NM_011994	ENSMUSG00000055782	Abcd2	ABC39|ALDL1|ALDR|ALDRP	ATP-binding cassette, sub-family D (ALD), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-88118686-4	chr8	88118598	88118798	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029074)	promoter-TSS (NM_029074)	-61.0	NM_029074	382030.0	Mm.216574	NM_029074	ENSMUSG00000036810	Cnep1r1	5033428A16Rik|NEP1-R1|Tmem188	CTD nuclear envelope phosphatase 1 regulatory subunit 1	protein-coding	5.01147630785576	5.08465338623297	5.91343044415973	5.12335551516382	4.44136737526434	5.62128888153328	4.59556336324635	4.2302044021382	-0.600636110849359	0.119354152465988	0.541744434282568
Merged-chr11-115185612-2	chr11	115185512	115185712	+	710.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025400, intron 2 of 6)	intron (NM_025400, intron 2 of 6)	1704.0	NM_025400	66176.0	Mm.86823	NM_025400	ENSMUSG00000015542	Nat9	1110028N05Rik	N-acetyltransferase 9 (GCN5-related, putative)	protein-coding	0.786763403574152	0.299813412983601	0.29182903233356	1.21642438962111	0.437019187381496	0.301605025684013	0.293595248517175	0.866631121722593	-1.1881926368418	0.527944177442556	1
Merged-chr11-43433717-4	chr11	43433633	43433833	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_148673)	promoter-TSS (NM_148673)	2.0	NM_198936	193116.0	Mm.28200	NM_148673	ENSMUSG00000020409	Slu7	AU018913|D11Ertd730e|D3Bwg0878e	SLU7 splicing factor homolog (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133820975-5	chr4	133820804	133821004	+	761.119995	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53827.0	NM_001285506	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	1.73619110524057	1.2742446843725	1.49832519551296	2.51030522033606	2.39746101625783	2.26679465898185	2.9092807785692	1.83989895137213	1.31451420053783	0.180508453097822	0.652724659514065
Merged-chr16-33520059-4	chr16	33519957	33520157	+	945.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083902, intron 1 of 11)	intron (NM_001083902, intron 1 of 11)	1462.0	NM_001083902	171286.0	Mm.35253	NM_134251	ENSMUSG00000035506	Slc12a8	CCC9|E330020C02Rik	solute carrier family 12 (potassium/chloride transporters), member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-148535083-1	chr5	148534983	148535183	+	658.0	f0_balb.idr	intron (NM_001359199, intron 3 of 6)	intron (NM_001359199, intron 3 of 6)	16590.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	1.12170334951937	0.523879247015512	0.51366181875115	1.46738476585912	1.03657722512653	1.07984825226917	0.515925998834571	0.507090012366513	-0.754471206544285	0.660832650498132	0.990834071047625
Merged-chr15-76552841-2	chr15	76552741	76552941	+	980.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13898.0	NM_029643	52710.0	Mm.28597	NM_029643	ENSMUSG00000022560	Slc52a2	2010003P03Rik|D15Ertd747e|GPCR42|Gpr172b|PAR2|mRFT1	solute carrier protein 52, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-44187304-3	chr16	44187220	44187420	+	914.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029889, intron 1 of 7)	intron (NM_001029889, intron 1 of 7)	13923.0	NM_001029889	207806.0	Mm.310566	NM_001029889	ENSMUSG00000068284	Usf3	5530400K22Rik|Gm1779|Gm608|mKIAA2018	upstream transcription factor family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53050341-2	chr4	53050241	53050441	+	793.833374	f1_balb.idr|f1_c57bl6.idr	exon (NM_013454, exon 36 of 50)	exon (NM_013454, exon 36 of 50)	38461.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-25161685-2	chr10	25161585	25161785	+	558.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38485.0	NM_001347460	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-95747538-3	chr12	95747439	95747639	+	793.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201518, intron 1 of 1)	intron (NM_201518, intron 1 of 1)	55313.0	NM_201518	399558.0	Mm.341948	NM_201518	ENSMUSG00000047414	Flrt2	-	fibronectin leucine rich transmembrane protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99152526-1	chr7	99152426	99152626	+	573.0	f1_balb.idr	Intergenic	Intergenic	-11382.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	0.607207918222983	0.89641030333452	0.864555170285296	0.627053870486001	1.42821091386657	1.76073397073647	1.68486577840882	0.629103179576254	3.36012401548672	0.0350737073248548	0.265330605601266
Merged-chr4-81742716-4	chr4	81742610	81742810	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-255697.0	NR_030570	100124446.0		NR_030570	ENSMUSG00000077941	Mir466h	Mirn466h	microRNA 466h	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-131235115-4	chr2	131235018	131235218	+	972.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144888, intron 1 of 6)	intron (NM_144888, intron 1 of 6)	1055.0	NM_144888	228607.0	Mm.287226	NM_144888	ENSMUSG00000037523	Mavs	D430028G21Rik|IPS-1|Visa|cardif	mitochondrial antiviral signaling protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21901656-4	chr9	21901535	21901735	+	991.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16548.0	NM_031874	19340.0	Mm.260157	NM_031874	ENSMUSG00000019066	Rab3d	C130057E11Rik	RAB3D, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-100750950-4	chr13	100750845	100751045	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6286.0	NM_025369	66128.0	Mm.306173	NM_025369	ENSMUSG00000061474	Mrps36	1110018B13Rik|S36mt	mitochondrial ribosomal protein S36	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-53465714-2	chr3	53465614	53465814	+	705.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_173382, intron 1 of 12)	intron (NM_173382, intron 1 of 12)	1897.0	NM_173382	212127.0	Mm.491292	NM_173382	ENSMUSG00000049504	Proser1	2810046L04Rik|9330161F11	proline and serine rich 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-77251646-4	chr16	77251548	77251748	+	998.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-77680.0	NR_015543	77994.0	Mm.394688	NR_015543	ENSMUSG00000090386	Mir99ahg	2810055G20Rik|D730043B02Rik	Mir99a and Mirlet7c-1 host gene (non-protein coding)	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-47262809-4	chr4	47262743	47262943	+	801.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009928, intron 10 of 39)	intron (NM_009928, intron 10 of 39)	54831.0	NM_009928	12819.0	Mm.233547	NM_009928	ENSMUSG00000028339	Col15a1	-	collagen, type XV, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-145285410-2	chr7	145285310	145285510	+	789.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1399.0	NR_132642	233979.0	Mm.102235	NM_146206	ENSMUSG00000048677	Tpcn2	D830047E22Rik|Gm35086	two pore segment channel 2	protein-coding	-0.0163743337357817	-0.441484378906608	-0.44480859255124	-0.447358889206488	-0.0988489376187971	-0.440732145392626	-0.444077225371035	-0.163172157354407	0.446067686623592	0.864177075363564	1
Merged-chr14-105903064-2	chr14	105902964	105903164	+	577.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-6245.0	NM_011897	24064.0	Mm.89982	NM_011897	ENSMUSG00000022114	Spry2	sprouty2	sprouty RTK signaling antagonist 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-39222720-4	chr6	39222609	39222809	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F2|LTR|ERVL-MaLR	-15936.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-16244506-3	chr14	16244401	16244601	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359882, intron 1 of 3)	intron (NM_001359882, intron 1 of 3)	-1170.0	NM_001359883	71147.0	Mm.197960	NM_027695	ENSMUSG00000021786	Oxsm	4933425A18Rik|C80494	3-oxoacyl-ACP synthase, mitochondrial	protein-coding	4.03749871545662	3.87431930759749	2.84904821883349	3.97512644626661	2.62867491680072	3.68913843881529	1.65763608004964	3.01268474715071	-1.28902607228068	0.0569446388979355	0.353025375902909
Merged-chr4-46560297-4	chr4	46560142	46560342	+	920.9791869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164804, intron 2 of 11)	intron (NM_001164804, intron 2 of 11)	6198.0	NM_178893	107684.0	Mm.416311	NM_178893	ENSMUSG00000028337	Coro2a	9030208C03Rik|AI563590|IR10	coronin, actin binding protein 2A	protein-coding	1.88975912907472	1.34528215182854	0.904040820944788	1.53697917114965	0.872353655796886	1.16140921279475	1.92092933714637	1.54558169424189	-0.0996689439465389	0.939132016369667	0.998431161219273
Merged-chr1-192091035-4	chr1	192090976	192091176	+	817.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011633, intron 1 of 9)	intron (NM_011633, intron 1 of 9)	1523.0	NM_011633	22033.0	Mm.380491	NM_011633		Traf5	-	TNF receptor-associated factor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-52228074-2	chr1	52227974	52228174	+	614.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081081, intron 1 of 17)	intron (NM_001081081, intron 1 of 17)	5158.0	NM_001081081	14660.0	Mm.398608	NM_001081081	ENSMUSG00000026103	Gls	6330442B14|AI314027|B230365M23Rik	glutaminase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-97955859-2	chr3	97955759	97955959	+	661.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033779, intron 1 of 1)	B4A|SINE|B4	25686.0	NM_001033779	433632.0	Mm.212421	NM_001033779		Gm5544	EG433632	predicted gene 5544	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-17885495-4	chr14	17885259	17885459	+	968.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113417, intron 2 of 9)	intron (NM_001113417, intron 2 of 9)	-96285.0	NM_009380	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-55571120-4	chr13	55571013	55571213	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145382)	promoter-TSS (NM_145382)	7.0	NM_145382	212483.0	Mm.35661	NM_145382	ENSMUSG00000021495	Fam193b	IRIZIO|Kiaa1931	family with sequence similarity 193, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-134187180-4	chr4	134187082	134187282	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144527)	promoter-TSS (NM_144527)	-97.0	NM_144527	70012.0	Mm.26542	NM_144527	ENSMUSG00000037443	Cep85	2410030J07Rik|AI173272|AI173504|Ccdc21	centrosomal protein 85	protein-coding	5.86870453195533	5.56499276569873	5.80176106513401	5.17448005990999	6.0625464843598	5.66086082343428	6.20138749167456	5.05954723445672	0.206184893746275	0.490105609539939	0.934345795476137
Merged-chr4-62359551-7	chr4	62359362	62359562	+	814.738098	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355385, intron 1 of 27)	intron (NM_001355385, intron 1 of 27)	1134.0	NM_001355385	338355.0	Mm.357792	NM_001045528	ENSMUSG00000066151	Fkbp15	BB131447|C430014M02Rik|FKBO133|FKBP-133|FKBP-15|FKBP133|mKIAA0674	FK506 binding protein 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-28823635-3	chr13	28823526	28823726	+	915.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045054, intron 2 of 7)	ID_B1|SINE|B4	61796.0	NR_045054	72518.0	Mm.37454	NR_045053		2610307P16Rik	AI666457	RIKEN cDNA 2610307P16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-68719163-2	chr10	68719063	68719263	+	730.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-4583.0	NM_177794	327766.0	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-142573042-4	chr6	142572952	142573152	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-1438.0	NM_001330366	16523.0	Mm.1482	NM_008428	ENSMUSG00000030247	Kcnj8	AI448900|Kir6.1|gnite|slmbr|sltr|uKATP-1	potassium inwardly-rectifying channel, subfamily J, member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-111095974-3	chr9	111095901	111096101	+	654.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22110.0	NM_027742	71268.0	Mm.302287	NM_027742	ENSMUSG00000032497	Lrrfip2	5133400F20Rik|AI850587	leucine rich repeat (in FLII) interacting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-129969539-4	chr3	129969428	129969628	+	912.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025779, intron 1 of 7)	intron (NM_025779, intron 1 of 7)	678.0	NM_025779	66815.0	Mm.31056	NM_025779	ENSMUSG00000027994	Mcub	9030408N13Rik|Ccdc109b	mitochondrial calcium uniporter dominant negative beta subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-87690388-4	chr11	87690276	87690476	+	758.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172448, intron 2 of 9)	intron (NM_172448, intron 2 of 9)	-9148.0	NR_045139	68690.0	Mm.342009	NR_045139		1110028F11Rik	-	RIKEN cDNA 1110028F11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-79809359-4	chr3	79809231	79809431	+	878.4833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33331.0	NM_027495	70652.0	Mm.46635	NM_027495	ENSMUSG00000027956	Tmem144	1110057I03Rik|5730537D05Rik	transmembrane protein 144	protein-coding	5.543858257004	4.26171377414748	4.78710794774831	5.70076342865947	4.74605296941377	4.72901688089786	4.47054771112803	4.9247321705011	-0.566654945579902	0.133533575537107	0.571109021244848
Merged-chr7-118741841-3	chr7	118741737	118741937	+	692.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027815, intron 1 of 30)	intron (NM_027815, intron 1 of 30)	1566.0	NM_027815	71517.0	Mm.213298	NM_027815	ENSMUSG00000030982	9030624J02Rik	2610029J22Rik	RIKEN cDNA 9030624J02 gene	protein-coding	2.85872922501958	2.93395726941196	2.60289168091959	3.58084356059325	2.14272246957323	1.49512380105317	1.73326700142712	3.54762946825136	-0.918415159636694	0.285908500943423	0.79047889608285
Merged-chr18-78312281-4	chr18	78312184	78312384	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207651, intron 3 of 21)	intron (NM_207651, intron 3 of 21)	-105844.0	NM_001110274	27411.0	Mm.44158	NM_030683	ENSMUSG00000024552	Slc14a2	UT-A1|UT-A3	solute carrier family 14 (urea transporter), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-122055744-2	chr10	122055644	122055844	+	646.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8429.0	NM_001081037	117600.0	Mm.288698	NM_001081037	ENSMUSG00000020121	Srgap1	4930572H05Rik|Arhgap13	SLIT-ROBO Rho GTPase activating protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71289917-1	chr17	71289817	71290017	+	1000.0	f1_balb.idr	intron (NM_001357337, intron 2 of 7)	intron (NM_001357337, intron 2 of 7)	21094.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	-0.220724493577136	0.144500226060363	-0.211324304749236	0.0861289137481237	0.499970337775228	-0.205702106804653	-0.21031293118626	-0.214242819214497	0.461803576265029	0.84761366537902	1
Merged-chr1-153414464-4	chr1	153414351	153414551	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033736)	promoter-TSS (NR_033736)	-218.0	NR_033736	626058.0	Mm.31556	NM_001177359		E330020D12Rik	EG626058|F430003O07Rik|Gm6648	Riken cDNA E330020D12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-90324405-3	chr5	90324325	90324525	+	661.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr	intron (NM_198010, intron 1 of 32)	B1_Mur1|SINE|Alu	41760.0	NM_030886	81702.0	Mm.245522	NM_030886	ENSMUSG00000055204	Ankrd17	4933425K22Rik|A130069E23Rik|A930008M01|AA407558|AA516750|AU040470|Foe|Gtar|Mask|mKIAA0697	ankyrin repeat domain 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-100148529-3	chr13	100148386	100148586	+	852.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001126182, intron 15 of 15)	ID4_|SINE|ID	23631.0	NM_011420	20595.0	Mm.2025	NM_011420	ENSMUSG00000021645	Smn1	AI849087|Gemin1|Smn	survival motor neuron 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-99253579-3	chr10	99253479	99253679	+	664.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9652.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-22971979-4	chr11	22971886	22972086	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011663)	promoter-TSS (NM_011663)	-19.0	NM_011663	22183.0	Mm.29542	NM_011663	ENSMUSG00000044068	Zrsr1	D11Ncvs75|Irlgs2|SP2|U2af1-rs1|U2afbp-rs	zinc finger (CCCH type), RNA binding motif and serine/arginine rich 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-83665842-1	chr8	83665742	83665942	+	718.0	f1_balb.idr	promoter-TSS (NM_013641)	promoter-TSS (NM_013641)	-802.0	NM_013641	19216.0	Mm.213000	NM_013641	ENSMUSG00000019464	Ptger1	EP1|Ptgerep1	prostaglandin E receptor 1 (subtype EP1)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167225152-4	chr2	167225034	167225234	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008968, intron 3 of 9)	MTC|LTR|ERVL-MaLR	15403.0	NM_008968	19223.0	Mm.2339	NM_008968	ENSMUSG00000017969	Ptgis	Cyp8|Cyp8a1|Pgis	prostaglandin I2 (prostacyclin) synthase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30636067-2	chr7	30635967	30636167	+	779.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007959)	promoter-TSS (NM_007959)	-215.0	NM_007959	14008.0	Mm.4829	NM_007959	ENSMUSG00000006311	Etv2	Etsrp71	ets variant 2	protein-coding	-0.0893686331486467	-0.463391463172037	-0.467604602900762	-0.470858557392463	0.340611866815279	-0.462442436814302	-0.46667494038982	-0.470289882897282	1.42140402867805	0.603598116885472	1
Merged-chr12-102451701-4	chr12	102451593	102451793	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11880.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-32272263-2	chr9	32272163	32272363	+	642.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48014.0	NM_177379	330914.0	Mm.46683	NM_177379	ENSMUSG00000041444	Arhgap32	3426406O18Rik|Gc-gap|Grit|Px-rics|Rics|mKIAA0712|p200Rhogap|p250Gap	Rho GTPase activating protein 32	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67005765-2	chr10	67005665	67005865	+	937.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_110511, intron 1 of 6)	B2_Mm2|SINE|B2	690.0	NR_110511	102634101.0	Mm.445258	NR_110511	ENSMUSG00000112925	Gm31763	-	predicted gene, 31763	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91476843-2	chr16	91476743	91476943	+	722.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8372.0	NM_010508	15975.0	Mm.502	NM_010508	ENSMUSG00000022967	Ifnar1	Ifar|Ifnar|Ifrc|Infar	interferon (alpha and beta) receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-107564841-4	chr1	107564751	107564951	+	952.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	BGLII_B|LTR|ERVK	-25155.0	NM_011459	20725.0	Mm.83909	NM_011459	ENSMUSG00000026315	Serpinb8	CAP-2|CAP2|NK10|Spi8|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118907592-2	chr9	118907492	118907692	+	615.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR26C_MM|LTR|ERVK	-18944.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153200871-2	chr2	153200771	153200971	+	661.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133847, intron 14 of 17)	intron (NM_133847, intron 14 of 17)	24570.0	NM_198617	241732.0	Mm.277243	NM_198617	ENSMUSG00000074671	Tspyl3	AW212607|Gm36	TSPY-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-75903504-4	chr15	75903394	75903594	+	992.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029663, exon 3 of 10)	exon (NM_029663, exon 3 of 10)	5850.0	NM_001285433	66656.0	Mm.258927	NM_023240	ENSMUSG00000055762	Eef1d	EF-1-delta	eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-82774156-4	chr8	82774061	82774261	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145600)	promoter-TSS (NM_145600)	-35.0	NM_145600	30932.0	Mm.269248	NM_145600	ENSMUSG00000031711	Zfp330	BC008086|Noa36|Znf330	zinc finger protein 330	protein-coding	-1.3681463318974	-1.33624156493372	-1.34650167276047	-0.80669348975676	-1.36769697821496	-1.33401815676661	-1.34417900924365	-1.3534210303531	-2.3580830592467	0.49586638340111	1
Merged-chr16-34121010-4	chr16	34120930	34121130	+	907.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177357, intron 33 of 59)	intron (NM_177357, intron 33 of 59)	-153992.0	NM_009471	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-108528184-4	chr6	108528084	108528284	+	983.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 60 of 61)	intron (NM_010585, intron 60 of 61)	38441.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-30471140-2	chr15	30471040	30471240	+	904.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355502, intron 2 of 21)	intron (NM_001355502, intron 2 of 21)	298547.0	NM_008729	18163.0	Mm.321648	NM_008729	ENSMUSG00000022240	Ctnnd2	Catnd2|Nprap|neurojugin	catenin (cadherin associated protein), delta 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101587881-4	chr11	101587796	101587996	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359325, intron 4 of 7)	RMER19B|LTR|ERVK	5597.0	NM_001359325	217203.0	Mm.280559	NM_144830	ENSMUSG00000034947	Tmem106a	0610008L10Rik|AI043106|BC022145	transmembrane protein 106A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-84761450-4	chr12	84761315	84761515	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023409, intron 2 of 3)	MLTR14|LTR|ERV1	11697.0	NM_023409	67963.0	Mm.282556	NM_023409	ENSMUSG00000021242	Npc2	2700012J19Rik|AA408070|AU045843|HE1	NPC intracellular cholesterol transporter 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-127022309-4	chr4	127022185	127022385	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023603, intron 1 of 9)	CpG	984.0	NM_023603	71514.0	Mm.257276	NM_023603	ENSMUSG00000028820	Sfpq	1110004P21Rik|2810416M14Rik|5730453G22Rik|9030402K04Rik|AU021830|D4Ertd314e|Gm12940|PSF|REP1	splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-23552146-2	chr13	23552046	23552246	+	848.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175655)	promoter-TSS (NM_175655)	-503.0	NM_175655	319157.0	Mm.442307	NM_175655	ENSMUSG00000069274	Hist1h4f	-	histone cluster 1, H4f	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-53516452-1	chr19	53516352	53516552	+	796.5	f0_balb.idr	Intergenic	Intergenic	-12866.0	NM_001085390	240672.0	Mm.482424	NM_001085390	ENSMUSG00000034765	Dusp5	Gm337	dual specificity phosphatase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-64358189-2	chr7	64358089	64358289	+	919.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177893, intron 8 of 13)	L1MB8|LINE|L1	15906.0	NM_177893	330554.0	Mm.236510	NM_177893	ENSMUSG00000033458	Fan1	6030441H18Rik|Mtmr15|mFAN1	FANCD2/FANCI-associated nuclease 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-18046948-2	chr2	18046848	18047048	+	812.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_028317, exon 1 of 1)	exon (NM_028317, exon 1 of 1)	1501.0	NM_028317	72668.0	Mm.102183	NM_028317	ENSMUSG00000054074	Skida1	2810030E01Rik|5730507N06Rik|BB088113|DLN-1	SKI/DACH domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-103945993-4	chr2	103945910	103946110	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11985.0	NM_001142337	16909.0	Mm.29266	NM_008505	ENSMUSG00000032698	Lmo2	Rbtn-2|Rbtn2|Rhom-2|Ttg2	LIM domain only 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98787025-4	chr11	98786930	98787130	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8486.0	NM_001361931	74026.0	Mm.258352	NM_028722	ENSMUSG00000052915	Msl1	2810017F12Rik|4121402D02Rik|4930463F05Rik|AA682082|Msl-1	male specific lethal 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-89910962-2	chr16	89910862	89911062	+	868.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009384, intron 2 of 27)	intron (NM_009384, intron 2 of 27)	49865.0	NM_009384	21844.0	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	-1.3681463318974	-1.33624156493372	-1.34650167276047	-0.80669348975676	-1.36769697821496	-1.33401815676661	-1.34417900924365	-1.3534210303531	-2.3580830592467	0.49586638340111	1
Merged-chr6-38968149-4	chr6	38968074	38968274	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 3 of 12)	intron (NM_011539, intron 3 of 12)	49188.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-77621128-2	chr18	77621028	77621228	+	737.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-55992.0	NM_001164504	225743.0	Mm.23293	NM_001164504	ENSMUSG00000025427	Rnf165	2900024M11Rik|AI427432|Akd2|Ark2c|G630064H08Rik|Gm96	ring finger protein 165	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-92436621-2	chr5	92436521	92436721	+	635.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-1422.0	NM_183392	269113.0	Mm.275289	NM_183392	ENSMUSG00000034826	Nup54	3110079L04Rik|54kDa	nucleoporin 54	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-43520788-2	chr1	43520693	43520893	+	618.75	f0_balb.idr|f0_c57.idr	intron (NM_010879, intron 2 of 4)	intron (NM_010879, intron 2 of 4)	75042.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-75435976-4	chr1	75435877	75436077	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357171)	promoter-TSS (NM_001357171)	41.0	NM_001357169	69080.0	Mm.23951	NM_133708	ENSMUSG00000033021	Gmppa	1810012N01Rik	GDP-mannose pyrophosphorylase A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25268140-4	chr7	25268049	25268249	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302811, intron 1 of 20)	intron (NM_001302811, intron 1 of 20)	450.0	NM_001302811	71722.0	Mm.28833	NM_027882	ENSMUSG00000005442	Cic	1200010B10Rik|mKIAA0306	capicua transcriptional repressor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-12923312-2	chr13	12923212	12923412	+	607.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	82018.0	NM_031191	18811.0	Mm.88796	NM_031191	ENSMUSG00000079092	Prl2c2	Ghd2|MRP-1|PLF-1|Plf|Plf1	prolactin family 2, subfamily c, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-56719795-2	chr19	56719695	56719895	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(GA)n|Simple_repeat|Simple_repeat	-2577.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-31032933-2	chr7	31032833	31033033	+	640.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001111073, exon 8 of 8)	3' UTR (NM_001111073, exon 8 of 8)	7384.0	NR_106017	102465635.0		NR_106017	ENSMUSG00000098783	Mir7050	Gm27578|mmu-mir-7050	microRNA 7050	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-64179165-1	chr15	64179065	64179265	+	848.0	f0_balb.idr	intron (NM_001276461, intron 5 of 28)	intron (NM_001276461, intron 5 of 28)	-118717.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	-1.43172712806865	-1.3992492906874	-1.40907085678131	-1.41713858359971	-0.932192548427885	-1.39712091634321	-1.40684746950024	-1.41569446435649	2.19283191591698	0.528233640655333	1
Merged-chr10-37072639-2	chr10	37072539	37072739	+	647.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	66287.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-145025571-4	chr7	145025458	145025658	+	884.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GC_rich|Low_complexity|Low_complexity	-85633.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191093427-2	chr1	191093327	191093527	+	679.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-4987.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	-2.18292257394068	-2.15545247547656	-2.03304972317742	-2.17058342868585	-2.18099422382073	-2.1536522739386	-2.16187909550322	-2.16936197735154	-0.683654500252594	0.846597994014493	1
Merged-chr15-77832211-4	chr15	77832103	77832303	+	815.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022410, intron 1 of 40)	intron (NM_022410, intron 1 of 40)	9972.0	NM_022410	17886.0	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83533425-4	chr11	83533324	83533524	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2906.0	NM_013653	20304.0	Mm.284248	NM_013653	ENSMUSG00000035042	Ccl5	MuRantes|RANTES|SISd|Scya5|TCP228	chemokine (C-C motif) ligand 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-14365707-4	chr16	14365615	14365815	+	930.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008576, intron 1 of 30)	intron (NM_008576, intron 1 of 30)	4157.0	NM_008576	17250.0	Mm.196634	NM_008576	ENSMUSG00000023088	Abcc1	Abcc1a|Abcc1b|MRP|Mdrap|Mrp1	ATP-binding cassette, sub-family C (CFTR/MRP), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-139337226-3	chr4	139337115	139337315	+	719.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15361.0	NM_001290810	69902.0	Mm.27871	NM_023536	ENSMUSG00000028741	Mrto4	2610012O22Rik|Mg684|Mrt4	mRNA turnover 4, ribosome maturation factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-47715536-2	chr8	47715436	47715636	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	-1605.0	NM_172407	70925.0	Mm.393807	NM_172407	ENSMUSG00000038069	Cdkn2aip	4921511I16Rik|AW208986|CARF	CDKN2A interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80856973-2	chr7	80856873	80857073	+	556.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5135.0	NM_009553	22691.0	Mm.358645	NM_009553	ENSMUSG00000038797	Zscan2	Zfp-29|Zfp29	zinc finger and SCAN domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-44146431-4	chr19	44146337	44146537	+	971.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028607)	promoter-TSS (NM_028607)	9.0	NM_028607	73689.0	Mm.124685	NM_028607	ENSMUSG00000057506	Bloc1s2	2410089B13Rik|BLOS2|Bloc1s2a	biogenesis of lysosomal organelles complex-1, subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-19300343-3	chr3	19300275	19300475	+	756.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122759, intron 1 of 12)	(TG)n|Simple_repeat|Simple_repeat	10947.0	NM_001122759	18583.0	Mm.355614	NM_008802	ENSMUSG00000069094	Pde7a	AU015378|AW047537	phosphodiesterase 7A	protein-coding	2.25937796344046	1.85706741490627	1.20230428405469	2.00495545589474	2.42094534684051	1.23290971439625	2.08043795861269	2.12460843529746	0.388302772990071	0.718367244768378	0.998431161219273
Merged-chr7-78910799-2	chr7	78910699	78910899	+	790.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_153795, exon 3 of 3)	non-coding (NR_153795, exon 3 of 3)	-2625.0	NM_001291221	57444.0	Mm.322843	NM_020583	ENSMUSG00000039236	Isg20	1600023I01Rik|2010107M23Rik|20kDa|DnaQL|HEM45	interferon-stimulated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-125467665-2	chr1	125467565	125467765	+	844.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	AT_rich|Low_complexity|Low_complexity	-31938.0	NM_001205385	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-129533889-4	chr3	129533745	129533945	+	933.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130450, intron 2 of 4)	CpG	-1457.0	NR_153368	102639747.0	Mm.393257	NR_153368		Gm35986	-	predicted gene, 35986	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-40047998-4	chr15	40047925	40048125	+	892.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155348, intron 1 of 2)	intron (NR_155348, intron 1 of 2)	2837.0	NR_155348	102636079.0	Mm.421381	NR_155348	ENSMUSG00000115142	Gm33251	-	predicted gene, 33251	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-34436006-2	chr1	34435906	34436106	+	573.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_027159)	TTS (NM_027159)	-2807.0	NR_039562	100628580.0		NR_039562	ENSMUSG00000092852	Mir5103	mir-5103|mmu-mir-5103|mu-mir-5103	microRNA 5103	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-45965232-5	chr13	45965142	45965342	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009124)	promoter-TSS (NM_009124)	-251.0	NM_009124	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-143511347-2	chr7	143511247	143511447	+	566.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8823.0	NM_009434	22113.0	Mm.334344	NM_009434	ENSMUSG00000010760	Phlda2	Ipl|Tssc3	pleckstrin homology like domain, family A, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-117190863-3	chr4	117190804	117191004	+	805.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8280.0	NM_134471	73804.0	Mm.247651	NM_134471	ENSMUSG00000028678	Kif2c	4930402F02Rik|ESTM5|Knsl6|MCAK|X83316	kinesin family member 2C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-54626263-4	chr11	54626067	54626267	+	849.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252494, intron 10 of 28)	intron (NM_001252494, intron 10 of 28)	30021.0	NM_001252497	192786.0	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111804604-2	chr12	111804504	111804704	+	568.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_028875, exon 8 of 8)	exon (NM_028875, exon 8 of 8)	9275.0	NM_028875	74335.0	Mm.19082	NM_028875	ENSMUSG00000021287	Xrcc3	-	X-ray repair complementing defective repair in Chinese hamster cells 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-8837484-4	chr19	8837366	8837566	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001136064)	promoter-TSS (NM_001136064)	-1.0	NM_001136064	14705.0	Mm.345134	NM_008144	ENSMUSG00000071657	Bscl2	2900097C17Rik|AI046355|Gng3lg	Berardinelli-Seip congenital lipodystrophy 2 (seipin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120800626-2	chr8	120800526	120800726	+	751.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61987.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56763572-4	chr17	56763477	56763677	+	981.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1174.0	NM_001360405	224907.0	Mm.293973	NM_144858	ENSMUSG00000007603	Dus3l	AI662135|AW557805	dihydrouridine synthase 3-like (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-52195555-2	chr3	52195455	52195655	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-72782.0	NM_019739	56458.0	Mm.29891	NM_019739	ENSMUSG00000044167	Foxo1	AI876417|Afxh|FKHR|Fkhr1|Foxo1a	forkhead box O1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-89128182-4	chr4	89128066	89128266	+	890.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_151607)	promoter-TSS (NR_151607)	60.0	NR_151607	102637941.0	Mm.366358	NR_151607		Gm12602	-	predicted gene 12602	ncRNA	2.21962889033087	2.2955396098925	2.31929099347653	2.15070972140609	2.46545819314205	1.7222796587655	1.21787132365543	1.19363420894923	-1.1687777990528	0.269442789232116	0.772801970187325
Merged-chr14-124380502-1	chr14	124380402	124380602	+	550.0	f1_balb.idr	intron (NM_207667, intron 1 of 4)	Lx|LINE|L1	-187956.0	NM_010201	14169.0	Mm.206362	NM_010201	ENSMUSG00000025551	Fgf14	FHF-4|Fhf4|Tg(tetO-MAPT*P301L)4510Kha|mFHF-4(1B)	fibroblast growth factor 14	protein-coding	0.774518881906243	0.388215685067886	0.874407059381194	0.372664760204268	0.362961312534157	0.390176559365504	0.884814755508044	1.32278568072419	0.979542325986938	0.589200561924752	1
Merged-chr17-84114119-4	chr17	84114014	84114214	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35454.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-157010327-2	chr2	157010227	157010427	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001164663)	TTS (NM_001164663)	-3252.0	NM_025853	66934.0	Mm.25410	NM_025853	ENSMUSG00000027635	Dsn1	1700022L09Rik|AW552447	DSN1 homolog, MIS12 kinetochore complex component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-14800074-4	chr14	14799966	14800166	+	955.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001360516)	TTS (NM_001360516)	-20749.0	NM_001195229	674895.0	Mm.317563	NM_001034865	ENSMUSG00000042567	Nek10	Gm282	NIMA (never in mitosis gene a)- related kinase 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-137754591-4	chr6	137754506	137754706	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172733)	promoter-TSS (NM_172733)	29.0	NM_172733	232449.0	Mm.29181	NM_172733	ENSMUSG00000030225	Dera	2010002D22Rik|2500002K03Rik|DEOC	deoxyribose-phosphate aldolase (putative)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4123255-4	chr19	4123157	4123357	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016666, intron 1 of 6)	L1MB2|LINE|L1	-1682.0	NM_001276284	11632.0	Mm.10433	NM_016666	ENSMUSG00000024847	Aip	AA408703|AW476050|Ara9|D19Bwg1412e|Fkbp16|Xap2	aryl-hydrocarbon receptor-interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-33270786-4	chr5	33270690	33270890	+	953.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198860, intron 1 of 9)	intron (NM_001198860, intron 1 of 9)	4214.0	NM_001310535	13016.0	Mm.7286	NM_013502	ENSMUSG00000037373	Ctbp1	BARS|CtBP3/BARS|D4S115h|D5H4S115|D5H4S115E	C-terminal binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35256159-2	chr17	35256059	35256259	+	775.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4870.0	NR_106169	102465886.0		NR_106169	ENSMUSG00000098269	Mir8094	Gm27513|mmu-mir-8094	microRNA 8094	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41932751-4	chr19	41932646	41932846	+	957.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023740)	promoter-TSS (NM_023740)	568.0	NM_001164561	66583.0	Mm.289086	NM_025644	ENSMUSG00000034321	Exosc1	2610035C18Rik|2610104C07Rik|2610312F07Rik|AI447561	exosome component 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126542280-3	chr8	126542224	126542424	+	955.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51112.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	0.825119941766326	0.572960431860076	0.56413881212208	1.21029742611661	1.14246949133972	0.574943376987825	0.910960551972001	1.21849424834472	0.797219382822482	0.620292229388865	1
Merged-chr7-73594222-2	chr7	73594122	73594322	+	850.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35827.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-121909927-4	chr8	121909826	121910026	+	872.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033485, intron 1 of 1)	intron (NM_001033485, intron 1 of 1)	2093.0	NM_001033485	407789.0	Mm.436576	NM_001033485		BC048644	-	cDNA sequence BC048644	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6261706-2	chr19	6261606	6261806	+	847.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_194348, exon 40 of 40)	exon (NM_194348, exon 40 of 40)	-2937.0	NR_029830	723957.0		NR_029830	ENSMUSG00000065582	Mir194-2	Mirn194-2|mir-194-2	microRNA 194-2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-67782976-1	chr16	67782876	67783076	+	568.0	f1_balb.idr	Intergenic	Lx2|LINE|L1	-162068.0	NM_178721	239857.0	Mm.394300	NM_178721	ENSMUSG00000064115	Cadm2	2900078E11Rik|9330131D06|A830029E02Rik|Igdf4d|Igsf4d|NECL3|SynCAM 2|SynCAM2	cell adhesion molecule 2	protein-coding	-0.419201668155385	-0.403967013353743	-0.408930151286739	-0.412777765825122	-0.000970402271061044	-0.402851899543563	0.512507918907558	-0.412104421339946	3.78995699980545	0.138315173312639	1
Merged-chr5-19532909-2	chr5	19532809	19533009	+	718.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001170746, intron 1 of 22)	Lx2|LINE|L1	305863.0	NM_001170746	50791.0	Mm.332231	NM_015823	ENSMUSG00000040003	Magi2	AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705	membrane associated guanylate kinase, WW and PDZ domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-95827674-3	chr15	95827578	95827778	+	861.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155276, intron 1 of 1)	MLT1B|LTR|ERVL-MaLR	2394.0	NR_155277	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-86987264-2	chr10	86987164	86987364	+	703.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_138673, intron 3 of 68)	intron (NM_138673, intron 3 of 68)	20678.0	NM_138673	192188.0	Mm.279611	NM_138673	ENSMUSG00000035459	Stab2	FEEL-2|FELL|MFEEL-2|STAB-2	stabilin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-117271765-4	chr6	117271627	117271827	+	912.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	103192.0	NM_021704	20315.0	Mm.303231	NM_013655	ENSMUSG00000061353	Cxcl12	Pbsf|Scyb12|Sdf1|Tlsf|Tpar1	chemokine (C-X-C motif) ligand 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-74261659-2	chr13	74261559	74261759	+	609.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001317351, intron 2 of 9)	intron (NM_001317351, intron 2 of 9)	30672.0	NM_009644	11624.0	Mm.290446	NM_009644	ENSMUSG00000021575	Ahrr	mKIAA1234	aryl-hydrocarbon receptor repressor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-55463601-2	chr13	55463501	55463701	+	872.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001030296)	promoter-TSS (NM_001030296)	-666.0	NM_001030296	432763.0	Mm.315457	NM_001030296	ENSMUSG00000034686	Prr7	XM_484263	proline rich 7 (synaptic)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-60273579-4	chr10	60273480	60273680	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4048.0	NM_001146123	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-150602372-2	chr2	150602272	150602472	+	561.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356491, intron 1 of 9)	intron (NM_001356491, intron 1 of 9)	6195.0	NM_001356491	71881.0	Mm.26599	NM_027977	ENSMUSG00000033096	Apmap	2310001A20Rik|AI314817	adipocyte plasma membrane associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-47069487-2	chr7	47069387	47069587	+	774.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13737.0	NR_106023	102465639.0		NR_106023	ENSMUSG00000098960	Mir7056	Gm27696|mmu-mir-7056	microRNA 7056	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-133430783-4	chr2	133430689	133430889	+	833.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-121370.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-39140732-4	chr18	39140634	39140834	+	994.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361073, intron 10 of 21)	intron (NM_001361073, intron 10 of 21)	147589.0	NM_175164	71302.0	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-82795508-4	chr10	82795406	82795606	+	945.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16617.0	NR_038042	70003.0	Mm.48789	NR_038042	ENSMUSG00000056821	1700028I16Rik	-	RIKEN cDNA 1700028I16 gene	ncRNA	2.36312432333346	1.89546209470719	2.57908334297599	2.74937979022861	3.88397642312393	3.17399253729615	3.66207893545485	2.51531256549163	1.73079114347654	0.0143295080016892	0.14046195833682
Merged-chr17-67329044-2	chr17	67328944	67329144	+	921.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	25415.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-22935793-4	chr8	22935675	22935875	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081149, exon 17 of 18)	exon (NM_001081149, exon 17 of 18)	-39061.0	NM_001110783	11733.0	Mm.334444	NM_031158	ENSMUSG00000031543	Ank1	Ank-1|nb|pale	ankyrin 1, erythroid	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-25496824-1	chr14	25496724	25496924	+	592.0	f0_balb.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	-37615.0	NR_037236	100526533.0		NR_037236	ENSMUSG00000093081	Mir3075	mir-3075|mmu-mir-3075	microRNA 3075	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-136639352-2	chr1	136639252	136639452	+	931.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14451.0	NM_001160251	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6331220-5	chr19	6331075	6331275	+	757.56665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3804.0	NM_001168488	17283.0	Mm.12917	NM_008583	ENSMUSG00000024947	Men1	AW045611	multiple endocrine neoplasia 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-33124658-3	chr4	33124559	33124759	+	705.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-7897.0	NM_008075	14408.0	Mm.14116	NM_008075	ENSMUSG00000028280	Gabrr1	GABA-C	gamma-aminobutyric acid (GABA) C receptor, subunit rho 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-111478299-1	chr7	111478199	111478399	+	623.5	f0_balb.idr	intron (NM_001360903, intron 10 of 10)	intron (NM_001360903, intron 10 of 10)	301678.0	NM_001360903	233733.0	Mm.323322	NM_173739	ENSMUSG00000038296	Galnt18	2900011G21Rik|BC024988|Galntl4|galNAc-T18|mpp-GalNAc-T18(O18)	polypeptide N-acetylgalactosaminyltransferase 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-43666219-4	chr6	43666106	43666306	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311111)	promoter-TSS (NM_001311111)	72.0	NM_013861	29807.0	Mm.320979	NM_013861	ENSMUSG00000029735	Tpk1	-	thiamine pyrophosphokinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-45512680-4	chr13	45512561	45512761	+	813.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025508, intron 1 of 8)	intron (NM_025508, intron 1 of 8)	5217.0	NM_025508	66355.0	Mm.290802	NM_025508	ENSMUSG00000000253	Gmpr	2310004P21Rik|AV028449|GMPR 1	guanosine monophosphate reductase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-51373191-3	chr3	51373109	51373309	+	794.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur3|SINE|Alu	23338.0	NR_028121	67749.0	Mm.273339	NM_026358	ENSMUSG00000037161	Mgarp	4930583H14Rik|AI195347|CESP-1|HUMMR|Osap|Qsap	mitochondria localized glutamic acid rich protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-99459460-2	chr10	99459360	99459560	+	808.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-149711.0	NR_038019	100504202.0	Mm.403801	NR_038019	ENSMUSG00000111962	Gm20110	-	predicted gene, 20110	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-21570379-3	chr16	21570257	21570457	+	879.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081366, intron 41 of 46)	intron (NM_001081366, intron 41 of 46)	124308.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16056710-4	chr7	16056674	16056874	+	931.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-15071.0	NM_001347559	666528.0	Mm.290718	NM_001099277	ENSMUSG00000078796	Zfp541	EG666528|Znf541	zinc finger protein 541	protein-coding	2.71275334299723	2.96655618897748	2.6833481986577	3.19109910529757	1.89110130591696	1.69857813242932	1.37039290708692	2.28475377759334	-2.33416761656893	0.00644976530067565	0.0804410437396117
Merged-chr11-119227001-2	chr11	119226901	119227101	+	747.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347625, intron 1 of 11)	RSINE1|SINE|B4	1498.0	NM_001347625	207592.0	Mm.205263	NM_172443	ENSMUSG00000039976	Tbc1d16	B930087K01|BC026530|Tcd1d16	TBC1 domain family, member 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-94496748-4	chr11	94496665	94496865	+	907.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361558, intron 1 of 8)	intron (NM_001361558, intron 1 of 8)	3209.0	NM_001361558	71889.0	Mm.248620	NM_027984	ENSMUSG00000010080	Epn3	2310022G12Rik	epsin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-45106629-6	chr2	45106565	45106765	+	980.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149354, intron 2 of 2)	intron (NR_149354, intron 2 of 2)	3612.0	NM_001289521	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-7121498-4	chr7	7121393	7121593	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172738)	promoter-TSS (NM_172738)	-17.0	NM_172738	232853.0	Mm.23838	NM_172738	ENSMUSG00000062116	Zfp954	5730403M16Rik|8030437F07|AA123315	zinc finger protein 954	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-4660030-4	chr11	4659942	4660142	+	870.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029291, intron 8 of 19)	intron (NM_029291, intron 8 of 19)	22249.0	NM_029291	75452.0	Mm.439906	NM_029291	ENSMUSG00000020412	Ascc2	1700011I11Rik|2610034L15Rik|AI482016|ASC1p100|AW046480	activating signal cointegrator 1 complex subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-78808088-4	chr18	78807997	78808197	+	927.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053099, intron 4 of 5)	MIRb|SINE|MIR	-211147.0	NM_207651	27411.0	Mm.44158	NM_030683	ENSMUSG00000024552	Slc14a2	UT-A1|UT-A3	solute carrier family 14 (urea transporter), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-57361698-2	chr17	57361598	57361798	+	608.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001355723, exon 2 of 22)	exon (NM_001355723, exon 2 of 22)	3012.0	NM_010130	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-109273276-4	chr3	109273196	109273396	+	766.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-67387.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-97487623-4	chr15	97487534	97487734	+	796.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	218188.0	NM_028003	71919.0	Mm.12255	NM_028003	ENSMUSG00000022466	Rpap3	2310042P20Rik|D15Ertd682e	RNA polymerase II associated protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-6707682-4	chr15	6707580	6707780	+	821.908325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030168)	promoter-TSS (NM_030168)	-701.0	NM_030168	78757.0	Mm.275811	NM_030168	ENSMUSG00000050310	Rictor	4921505C17Rik|6030405M08Rik|AVO3|AW492497|D530039E11Rik	RPTOR independent companion of MTOR, complex 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-137837299-4	chr5	137837182	137837382	+	817.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1004.0	NM_153510	231805.0	Mm.379385	NM_153510	ENSMUSG00000046245	Pilra	AV021745|FDF03	paired immunoglobin-like type 2 receptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-36649935-4	chr15	36649839	36650039	+	966.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40966.0	NM_008774	18458.0	Mm.371570	NM_008774	ENSMUSG00000022283	Pabpc1	PABP|Pabp1|PabpI|Pabpl1|ePAB	poly(A) binding protein, cytoplasmic 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-29647954-4	chr11	29647840	29648040	+	962.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44958.0	NM_194053	68585.0	Mm.192580	NM_024226	ENSMUSG00000020458	Rtn4	1110020G17Rik|AA407876|AA409940|AA960376|ASY|C130026I10Rik|NOGO|NSP-CL|NgA|Nogo-A|Nogo-B|Nogo-C|mKIAA0886|mKIAA4153	reticulon 4	protein-coding	0.58421428708524	0.860354643465232	1.31697279989646	0.622054677971292	0.410256865749524	1.49969588142518	0.433898369464684	0.4242734954397	-0.319170290492944	0.848497013053814	0.998431161219273
Merged-chr9-121574611-4	chr9	121574517	121574717	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-12403.0	NR_040740	75384.0	Mm.445955	NR_040740	ENSMUSG00000084995	Lyzl4os	4930589B17Rik|4930596M17Rik	lysozyme-like 4, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128493054-4	chr10	128492996	128493196	+	989.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001317220)	promoter-TSS (NM_001317220)	-87.0	NM_001317219	17904.0	Mm.337074	NM_010860	ENSMUSG00000090841	Myl6	ESMLC|LC17|LC17-GI|MLC-3|MLC1SM|Myln	myosin, light polypeptide 6, alkali, smooth muscle and non-muscle	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-40057773-4	chr10	40057627	40057827	+	819.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 3 of 5)	intron (NM_001114332, intron 3 of 5)	-32459.0	NM_144821	215929.0	Mm.55513	NM_144821	ENSMUSG00000038522	Mfsd4b1	AI317395|AI482555|Naglt1a	major facilitator superfamily domain containing 4B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-111831338-3	chr10	111831249	111831449	+	876.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	43027.0	NR_046029	629206.0	Mm.391444	NR_046029	ENSMUSG00000112533	Gm20758	-	predicted gene, 20758	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-146607377-4	chr3	146607271	146607471	+	911.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009474, intron 1 of 7)	intron (NM_009474, intron 1 of 7)	8227.0	NM_019957	56629.0	Mm.25853	NM_019957	ENSMUSG00000028185	Dnase2b	AI526873|Dlad|DnaseIIb	deoxyribonuclease II beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-100201904-4	chr13	100201830	100202030	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001126182, intron 1 of 15)	intron (NM_001126182, intron 1 of 15)	192.0	NM_001126182	17948.0	Mm.89961	NM_010872	ENSMUSG00000078945	Naip2	Birc1b|Naip-rs6	NLR family, apoptosis inhibitory protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-27883058-4	chr15	27882966	27883166	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081302, intron 9 of 56)	intron (NM_001081302, intron 9 of 56)	142782.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-20620006-4	chr16	20619906	20620106	+	911.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028420, exon 2 of 2)	3' UTR (NM_028420, exon 2 of 2)	1272.0	NM_028420	73047.0	Mm.425977	NM_028420	ENSMUSG00000051146	Camk2n2	2900075A18Rik	calcium/calmodulin-dependent protein kinase II inhibitor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-52016671-2	chr14	52016571	52016771	+	592.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033805)	promoter-TSS (NM_001033805)	-194.0	NM_001033805	619301.0	Mm.475177	NM_001033805	ENSMUSG00000072571	Tmem253	G630016D24Rik	transmembrane protein 253	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-111074134-4	chr9	111074024	111074224	+	957.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-16606.0	NM_001302376	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116646050-2	chr11	116645950	116646150	+	941.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_030206, exon 4 of 4)	3' UTR (NM_030206, exon 4 of 4)	8263.0	NM_030206	114886.0	Mm.34598	NM_030206	ENSMUSG00000020810	Cygb	3110001K20Rik|HGb|Staap	cytoglobin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-8927713-4	chr4	8927619	8927819	+	922.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	176395.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	1.90681465476217	1.72802806890651	2.76171550490265	2.76618573792915	1.92186145793177	2.569658792794	2.59324240272573	2.6100508768148	0.142079981745436	0.867288089963689	0.998431161219273
Merged-chr7-35098970-4	chr7	35098885	35099085	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20308.0	NM_001287521	12606.0	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-80335898-3	chr8	80335810	80336010	+	890.133301	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-158135.0	NM_010369	14934.0	Mm.13123	NM_010369	ENSMUSG00000051839	Gypa	AI853584|CD235a|GPA	glycophorin A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-60897522-4	chr13	60897409	60897609	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145801)	promoter-TSS (NM_001145801)	-62.0	NM_001145801	13025.0	Mm.30144	NM_007797	ENSMUSG00000074874	Ctla2b	AW545568|Ctla-2b	cytotoxic T lymphocyte-associated protein 2 beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-35680514-3	chr2	35680421	35680621	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290637, intron 3 of 16)	intron (NM_001290637, intron 3 of 16)	-11473.0	NM_001001602	69601.0	Mm.29629	NM_001001602	ENSMUSG00000026883	Dab2ip	2310011D08Rik|AI480459|Aip1|mKIAA1743	disabled 2 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-82816191-4	chr1	82816076	82816276	+	932.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23284.0	NM_010472	15463.0	Mm.392569	NM_010472	ENSMUSG00000026159	Agfg1	AU045498|C130049H11Rik|C85612|D730048C23Rik|Hrb|RAB|Rip	ArfGAP with FG repeats 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27001189-2	chr17	27001089	27001289	+	711.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16846.0	NM_001251881	70772.0	Mm.440437	NM_027544	ENSMUSG00000048731	Ggnbp1	0610031G08Rik|mdf	gametogenetin binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-40040302-4	chr12	40040206	40040406	+	979.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2319.0	NM_001039515	11861.0	Mm.12723	NM_007487	ENSMUSG00000047446	Arl4a	AI467555|Arl4	ADP-ribosylation factor-like 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141294039-3	chr7	141293946	141294146	+	800.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007878, exon 3 of 4)	exon (NM_007878, exon 3 of 4)	2040.0	NM_007878	13491.0	Mm.41075	NM_007878	ENSMUSG00000025496	Drd4	AW125663|D4R|Drd-4	dopamine receptor D4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-67445564-4	chr7	67445443	67445643	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72685.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43422684-2	chr4	43422584	43422784	+	556.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037709, intron 4 of 11)	intron (NM_001037709, intron 4 of 11)	6450.0	NM_177377	329831.0	Mm.454466	NM_177377	ENSMUSG00000042788	Fam166b	4833436C18Rik	family with sequence similarity 166, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-112612380-2	chr12	112612280	112612480	+	566.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198411, intron 21 of 22)	intron (NM_198411, intron 21 of 22)	-7667.0	NM_007421	11565.0	Mm.3440	NM_007421	ENSMUSG00000011148	Adssl1	AI528595|Adss|Adss1	adenylosuccinate synthetase like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-27430596-2	chr19	27430496	27430696	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_131940)	promoter-TSS (NR_131940)	559.0	NR_027987	107372.0	Mm.17942	NM_175354		C030016D13Rik	AW413347	RIKEN cDNA C030016D13 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6912716-2	chr19	6912616	6912816	+	678.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_007953, exon 5 of 7)	exon (NM_007953, exon 5 of 7)	1570.0	NR_105956	102466213.0		NR_105956	ENSMUSG00000098413	Mir6990	Gm27726|mmu-mir-6990	microRNA 6990	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-32010547-3	chr16	32010461	32010661	+	715.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-7274.0	NM_177103	320213.0	Mm.152890	NM_023801	ENSMUSG00000022772	Senp5	6230429P13Rik|A730063F07Rik|AI851888|BB189556|SMT3IP3	SUMO/sentrin specific peptidase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-110250896-4	chr7	110250807	110251007	+	889.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009302, intron 2 of 11)	L1MB8|LINE|L1	29204.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-25643046-1	chr14	25642946	25643146	+	617.0	f1_balb.idr	intron (NM_183208, intron 7 of 23)	intron (NM_183208, intron 7 of 23)	39533.0	NM_001309430	100188919.0	Mm.473810	NM_001309430		Gm45915	Israa	predicted gene, 45915	protein-coding	-0.54341485374287	-0.89742595136803	-0.905016171108014	-0.907153240756156	-0.910163754634862	-0.894797809717363	-0.448600745209986	-0.906780294735573	0.400252185036517	0.89827482116786	1
Merged-chr15-25533241-3	chr15	25533098	25533298	+	942.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-89352.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-91789955-4	chr12	91789855	91790055	+	946.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3519.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-181591547-1	chr2	181591447	181591647	+	542.0	f1_balb.idr	intron (NM_001164597, intron 1 of 16)	intron (NM_001164597, intron 1 of 16)	914.0	NM_001164597	269401.0	Mm.386888	NM_001164597	ENSMUSG00000000823	Zfp512b	Gm632|Znf512b	zinc finger protein 512B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-125582906-3	chr7	125582788	125582988	+	701.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20541.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	3.00621727608785	3.18387255916324	3.16813405681153	3.16229287419971	2.57425366888296	3.20654792804871	2.51869515400261	2.8152838561395	-0.596277741779457	0.35205027791436	0.852350828361626
Merged-chr10-67596158-2	chr10	67596058	67596258	+	753.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24199.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-52082061-4	chr16	52081990	52082190	+	933.4249880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033238, intron 3 of 17)	intron (NM_001033238, intron 3 of 17)	50541.0	NM_001033238	208650.0	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141469146-2	chr7	141469046	141469246	+	584.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111050, intron 1 of 6)	intron (NM_001111050, intron 1 of 6)	357.0	NM_001111050	12476.0	Mm.30246	NM_009842	ENSMUSG00000025510	Cd151	PETA-3|SFA-1|Tspan24	CD151 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126378052-4	chr7	126377949	126378149	+	864.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023712)	promoter-TSS (NM_023712)	-115.0	NR_045537	73658.0	Mm.11112	NM_023712	ENSMUSG00000030741	Spns1	2210013K02Rik|Spin1|Spinl	spinster homolog 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-29430680-4	chr19	29430546	29430746	+	920.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021396, intron 2 of 5)	intron (NM_021396, intron 2 of 5)	19727.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-94328799-2	chr16	94328699	94328899	+	663.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_133229, intron 1 of 3)	intron (NM_133229, intron 1 of 3)	377.0	NM_133229	170765.0	Mm.42604	NM_133229	ENSMUSG00000022941	Ripply3	Dscr6	ripply transcriptional repressor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-68300326-4	chr18	68300246	68300446	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026440)	promoter-TSS (NM_026440)	-9.0	NM_026440	67897.0	Mm.27544	NM_026440	ENSMUSG00000009535	Rnmt	2610002P10Rik|AI848273|Rg7mt1|mKIAA0398	RNA (guanine-7-) methyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28801679-4	chr17	28801585	28801785	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081315, intron 1 of 12)	CpG	559.0	NM_001081315	268936.0	Mm.291877	NM_199061	ENSMUSG00000063952	Brpf3	AI413466|AW493400|mKIAA1286	bromodomain and PHD finger containing, 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-34156123-1	chr13	34156023	34156223	+	569.0	f1_balb.idr	Intergenic	MTD|LTR|ERVL-MaLR	-6841.0	NM_001101430	69666.0	Mm.24788	NM_001101430	ENSMUSG00000071451	Psmg4	PAC-4|mPAC4	proteasome (prosome, macropain) assembly chaperone 4	protein-coding	-1.31349849087795	-1.28274354783242	-1.29349452597086	-1.3023256995151	-1.3130151546297	-1.28041376602105	-0.694015972326031	-1.30074492367298	2.57396649482007	0.456321314346772	1
Merged-chr9-70260462-4	chr9	70260355	70260555	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181072, intron 1 of 27)	intron (NM_181072, intron 1 of 27)	53105.0	NM_181072	71602.0	Mm.249311	NM_181072	ENSMUSG00000032220	Myo1e	2310020N23Rik|9130023P14Rik|AA407778|myosin-1e|myr 3	myosin IE	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30700449-2	chr2	30700349	30700549	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20761.0	NR_037272	100526499.0		NR_037272	ENSMUSG00000093091	Mir3089	mir-3089|mmu-mir-3089	microRNA 3089	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-114698530-1	chr5	114698430	114698630	+	544.0	f1_balb.idr	Intergenic	Intergenic	-7595.0	NM_019821	56356.0	Mm.275766	NM_019821	ENSMUSG00000011884	Gltp	1110001F24Rik|C76925|C77564	glycolipid transfer protein	protein-coding	-2.18375600819439	-2.15556918946382	-2.16409311609999	-2.17109492323169	-2.18177734563694	-2.01960173909294	-2.16216348594872	-2.16984160310277	0.759018020146679	0.829933115115583	1
Merged-chr11-118151736-2	chr11	118151636	118151836	+	808.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22517.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-174032855-2	chr1	174032755	174032955	+	796.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3A|LINE|L1	-1100.0	NM_172648	226695.0	Mm.425061	NM_172648	ENSMUSG00000054203	Ifi205	D3|D3cDNA|Ifi205a	interferon activated gene 205	protein-coding	-1.36015291771705	-1.32842431658676	-1.33874579108173	-1.34722415754512	-1.35969949349639	-1.32618761000664	-1.33640923549635	-0.791042329471244	2.42373733289067	0.484013421080845	1
Merged-chr6-39232289-2	chr6	39232189	39232389	+	780.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25516.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-34561727-1	chr18	34561627	34561827	+	554.0	f1_c57bl6.idr	TTS (NM_080637)	TTS (NM_080637)	17388.0	NR_151691	75533.0	Mm.275430	NM_080637	ENSMUSG00000035984	Nme5	1700019D05Rik|Nm23-M5	NME/NM23 family member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-102308368-1	chr11	102308268	102308468	+	561.0	f1_balb.idr	intron (NM_001044383, intron 14 of 19)	intron (NM_001044383, intron 14 of 19)	8919.0	NM_001044383	21429.0	Mm.2845	NM_011551	ENSMUSG00000020923	Ubtf	A930005G04Rik|NOR-90|Tcfubf|UBF|UBF-1|UBF1	upstream binding transcription factor, RNA polymerase I	protein-coding	-0.194964788163642	-0.134368772783617	-0.32219499580824	-0.169418019719581	-0.19115086637313	0.277888001579967	-0.321342982039713	-0.324650373680666	0.93568564532105	0.673156764314038	1
Merged-chr12-5181789-3	chr12	5181689	5181889	+	850.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164493, intron 3 of 13)	intron (NM_001164493, intron 3 of 13)	193893.0	NM_001164493	208439.0	Mm.388281	NM_001164493	ENSMUSG00000020627	Klhl29	A230106N14Rik|Gm68|Kbtbd9|mKIAA1921	kelch-like 29	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46002209-2	chr8	46002109	46002309	+	567.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2359.0	NM_001039562	654824.0	Mm.334517	NM_001039562	ENSMUSG00000050914	Ankrd37	-	ankyrin repeat domain 37	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-142708647-4	chr6	142708535	142708735	+	879.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6361.0	NM_001310143	20928.0	Mm.35670	NM_011511	ENSMUSG00000030249	Abcc9	AI414027|AI449286|SUR2A|SUR2B|Sur2	ATP-binding cassette, sub-family C (CFTR/MRP), member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-121459960-1	chr10	121459860	121460060	+	559.0	f1_balb.idr	intron (NM_138956, intron 1 of 4)	intron (NM_138956, intron 1 of 4)	16290.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	-0.156703419698703	-0.287081599376511	0.165607490756315	0.424331751795364	-0.299939429159628	-0.28606857934455	-0.290584102797558	-0.294435949233788	-3.69963043142902	0.120639514444708	1
Merged-chr7-89216856-4	chr7	89216752	89216952	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360746, intron 5 of 14)	intron (NM_001360746, intron 5 of 14)	121935.0	NM_028343	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-10441516-4	chr16	10441437	10441637	+	992.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013778, intron 1 of 6)	L1MB2|LINE|L1	5825.0	NM_001359069	383103.0	Mm.325732	NM_001013778	ENSMUSG00000050908	Tvp23a	Fam18a	trans-golgi network vesicle protein 23A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-46874268-4	chr17	46874162	46874362	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16359.0	NM_178385	72726.0	Mm.33780	NM_178385	ENSMUSG00000036430	Tbcc	2810055C19Rik	tubulin-specific chaperone C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90613179-4	chr2	90613071	90613271	+	841.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32524.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-72735594-2	chr1	72735494	72735694	+	584.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24334.0	NM_009084	19981.0	Mm.21529	NM_009084	ENSMUSG00000046330	Rpl37a	-	ribosomal protein L37a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-34096551-3	chr15	34096464	34096664	+	902.3666380000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357925, intron 1 of 10)	intron (NM_001357925, intron 1 of 10)	13845.0	NM_001357925	67154.0	Mm.130883	NM_026002	ENSMUSG00000022255	Mtdh	2610103J23Rik|3D3|3D3/Lyric|AEG-1|AV353288|D8Bwg1112e|Lyric	metadherin	protein-coding	1.82181408285618	2.88412830823856	2.65948839456278	3.84061064655491	2.45656233664468	1.53693402074818	3.01747818860089	3.67246068568125	-0.187544142472094	0.824773924205554	0.998431161219273
Merged-chr4-8937291-2	chr4	8937191	8937391	+	545.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F1|LTR|ERVL-MaLR	185967.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31252032-2	chr14	31251932	31252132	+	657.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360624)	promoter-TSS (NM_001360624)	543.0	NM_027088	104416.0	Mm.3779	NM_027088	ENSMUSG00000021901	Bap1	2300006C11Rik|AA989761|AW553466|mKIAA0272|uch-x4	Brca1 associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-75765252-4	chr10	75765072	75765272	+	995.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172549)	promoter-TSS (NM_172549)	-815.0	NM_172549	104248.0	Mm.257404	NM_172549	ENSMUSG00000020196	Cabin1	A330070M20Rik|Cain|Ppp3in	calcineurin binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-150740098-2	chr2	150739998	150740198	+	638.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8983.0	NM_001355068	12497.0	Mm.275524	NM_172117	ENSMUSG00000033068	Entpd6	2700026H11Rik|Cd39l2|NTPDase-6	ectonucleoside triphosphate diphosphohydrolase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28926694-2	chr17	28926594	28926794	+	931.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11370.0	NM_172450	207819.0	Mm.248931	NM_172450	ENSMUSG00000048905	4930539E08Rik	9130014G02	RIKEN cDNA 4930539E08 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-70935287-2	chr13	70935187	70935387	+	819.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52339.0	NM_029873	77166.0	Mm.159859	NM_029873	ENSMUSG00000021600	8030423J24Rik	-	RIKEN cDNA 8030423J24 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-150665710-4	chr5	150665616	150665816	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_201369)	promoter-TSS (NM_201369)	-104.0	NM_201369	381695.0	Mm.246934	NM_201369	ENSMUSG00000029655	N4bp2l2	2700092H06Rik|Gm38758|zag1	NEDD4 binding protein 2-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-78451585-4	chr9	78451470	78451670	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026658, intron 3 of 11)	RSINE1|SINE|B4	3360.0	NM_026658	68291.0	Mm.291779	NM_026658	ENSMUSG00000032342	Mto1	2310039H01Rik|5730419A02Rik	mitochondrial tRNA translation optimization 1	protein-coding	1.9445793263492	2.51437703079465	1.07525233964654	1.8157014671698	2.38678197248038	2.44111649054492	1.08158667947538	1.05660140900648	-0.0310942869396401	0.979504835733127	0.998431161219273
Merged-chr1-21271565-3	chr1	21271474	21271674	+	844.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26738.0	NR_002858	241041.0	Mm.290634	NR_002858	ENSMUSG00000025936	Gm4956	EG241041	predicted gene 4956	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-78200805-4	chr17	78200670	78200870	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_015800, exon 1 of 17)	exon (NM_015800, exon 1 of 17)	522.0	NM_015800	50766.0	Mm.311912	NM_015800	ENSMUSG00000024074	Crim1	AU015004	cysteine rich transmembrane BMP regulator 1 (chordin like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-80237224-2	chr12	80237124	80237324	+	730.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134156, intron 1 of 20)	intron (NM_134156, intron 1 of 20)	23147.0	NM_134156	109711.0	Mm.253564	NM_134156	ENSMUSG00000015143	Actn1	3110023F10Rik|Actn1a	actinin, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-113755669-2	chr6	113755569	113755769	+	777.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001036684, intron 19 of 19)	intron (NM_001036684, intron 19 of 19)	-14988.0	NM_024206	110379.0	Mm.29296	NM_024206	ENSMUSG00000030298	Sec13	1110003H02Rik|Sec13l1|Sec13r	SEC13 homolog, nuclear pore and COPII coat complex component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-24414546-2	chr16	24414446	24414646	+	550.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 1 of 12)	intron (NM_178665, intron 1 of 12)	-20891.0	NR_037954	68841.0	Mm.361995	NR_037954		Lppos	1110054M08Rik|AI481106	LIM domain containing preferred translocation partner in lipoma, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89913207-4	chr3	89913109	89913309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310676)	promoter-TSS (NM_001310676)	-13.0	NM_010559	16194.0	Mm.2856	NM_010559	ENSMUSG00000027947	Il6ra	CD126|IL-6R|IL-6R-alpha|IL-6RA|Il6r	interleukin 6 receptor, alpha	protein-coding	6.26979002016494	6.02028732479251	6.38833502912168	6.13413828766217	6.06918281605361	5.98440230495481	6.79955722797061	6.15892514764321	0.086401505351944	0.716228972315401	0.998431161219273
Merged-chr6-145196757-2	chr6	145196659	145196859	+	586.75	f0_balb.idr|f1_c57bl6.idr	intron (NM_177222, intron 6 of 15)	intron (NM_177222, intron 6 of 15)	14211.0	NM_177222	320662.0	Mm.207779	NM_177222	ENSMUSG00000043541	Casc1	A230084G12Rik|Las1	cancer susceptibility candidate 1	protein-coding	2.13769407242187	2.26048275996555	0.948026077074001	0.928891689254524	1.11963953817476	1.24881056325408	2.36382079124855	1.53629773528939	-0.150013888399557	0.904983795601194	0.998431161219273
Merged-chr4-142094509-4	chr4	142094405	142094605	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10201.0	NM_145402	214359.0	Mm.27587	NM_145402	ENSMUSG00000040616	Tmem51	BC003277	transmembrane protein 51	protein-coding	5.4944458444369	5.82310830519415	5.60442144062067	5.86866612457487	6.09245866443938	6.34439638394191	6.02225626815357	6.4410095761717	0.586877610494425	0.0124527820518178	0.127093735665999
Merged-chr6-125602696-2	chr6	125602596	125602796	+	936.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011708, intron 13 of 51)	intron (NM_011708, intron 13 of 51)	49748.0	NM_011708	22371.0	Mm.22339	NM_011708	ENSMUSG00000001930	Vwf	6820430P06Rik|AI551257|B130011O06Rik|C630030D09|F8VWF|VWD	Von Willebrand factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-21271365-4	chr19	21271261	21271461	+	891.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009551)	promoter-TSS (NM_009551)	-917.0	NM_009551	22682.0	Mm.292405	NM_009551	ENSMUSG00000024750	Zfand5	2310057A04Rik|5830475F03Rik|AA415485|Za20d2|Zfp216	zinc finger, AN1-type domain 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-41410287-2	chr3	41410187	41410387	+	596.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	82912.0	NR_040385	78706.0	Mm.366094	NR_040385	ENSMUSG00000097639	Platr4	C430002E04Rik	pluripotency associated transcript 4	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-121117720-2	chr8	121117620	121117820	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_013519, exon 1 of 1)	exon (NM_013519, exon 1 of 1)	1549.0	NM_013519	14234.0	Mm.14092	NM_013519	ENSMUSG00000046714	Foxc2	Fkh14|Hfhbf3|MFH-1|Mfh1	forkhead box C2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-41596544-3	chr13	41596428	41596628	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9688.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-13988414-4	chr10	13988287	13988487	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358782, intron 1 of 9)	intron (NM_001358782, intron 1 of 9)	22008.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118605676-2	chr9	118605576	118605776	+	690.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	-1033.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-88228984-4	chr8	88228888	88229088	+	999.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164499, intron 2 of 11)	intron (NM_001164499, intron 2 of 11)	29775.0	NM_001164498	214627.0	Mm.491211	NM_001164497	ENSMUSG00000036779	Papd5	5730445M16Rik|5830428A09	PAP associated domain containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5002296-4	chr19	5002178	5002378	+	891.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12307.0	NM_153553	225872.0	Mm.287867	NM_153553	ENSMUSG00000045903	Npas4	LE-PAS|Nxf	neuronal PAS domain protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76700792-4	chr15	76700682	76700882	+	840.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027122)	promoter-TSS (NM_027122)	-760.0	NM_027122	69572.0	Mm.34920	NM_027122	ENSMUSG00000019080	Mfsd3	2310010G13Rik	major facilitator superfamily domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106663876-3	chr11	106663789	106663989	+	822.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305158, intron 13 of 14)	intron (NM_001305158, intron 13 of 14)	-50959.0	NM_198292	21763.0	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-126611089-3	chr3	126610985	126611185	+	966.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025438, intron 2 of 18)	intron (NM_001025438, intron 2 of 18)	14134.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	2.36428407607223	1.25020703806548	2.73621628631967	2.20846340973747	2.38496489650851	2.59488064138877	1.48781795696741	1.19703657668409	-0.436958844706685	0.683174106804402	0.995882295196263
Merged-chr8-71463656-4	chr8	71463544	71463744	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022419)	promoter-TSS (NM_022419)	13.0	NM_022419	64296.0	Mm.276383	NM_022419	ENSMUSG00000007950	Abhd8	0910001L24Rik|AB030191	abhydrolase domain containing 8	protein-coding	2.88243949583371	2.98146431067194	1.68054640141981	1.63077072322811	2.57405988837704	1.9991842942755	3.74087620117125	2.60684452872909	0.833468965406243	0.335675696488959	0.836089117450301
Merged-chr6-97401845-2	chr6	97401745	97401945	+	718.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 5 of 23)	intron (NM_145148, intron 5 of 23)	57441.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-40486653-4	chr12	40486571	40486771	+	780.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	40618.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-37009265-2	chr1	37009165	37009365	+	571.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-69738.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-94348664-2	chr11	94348564	94348764	+	549.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029600, intron 29 of 30)	RSINE1|SINE|B4	20663.0	NM_146024	71452.0	Mm.141054	NM_027799	ENSMUSG00000020864	Ankrd40	1110011C06Rik|5530600A18Rik|Gcap15	ankyrin repeat domain 40	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-67426378-2	chr5	67426278	67426478	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164806, intron 1 of 4)	intron (NM_001164806, intron 1 of 4)	1421.0	NM_001164806	666938.0	Mm.101339	NM_001164806	ENSMUSG00000092060	Bend4	D330027G24Rik|EG666938	BEN domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165816438-1	chr2	165816338	165816538	+	708.0	f1_c57bl6.idr	intron (NM_027230, intron 13 of 23)	intron (NM_027230, intron 13 of 23)	41735.0	NM_001252585	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	1.44330081171061	0.53637943697711	0.514958644498791	2.48362982305896	0.472297083494794	0.541080273532729	1.63927537730755	0.500801917493035	-1.81338050492692	0.575972990819133	0.965286201225318
Merged-chr1-71653117-2	chr1	71653017	71653217	+	757.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040308)	promoter-TSS (NR_040308)	117.0	NM_001276410	14268.0	Mm.193099	NM_010233	ENSMUSG00000026193	Fn1	E330027I09|Fn|Fn-1	fibronectin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141394306-4	chr7	141394191	141394391	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011528, intron 1 of 7)	L1MC4a|LINE|L1	2131.0	NM_011528	21351.0	Mm.29182	NM_011528	ENSMUSG00000025503	Taldo1	-	transaldolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122805660-2	chr5	122805560	122805760	+	698.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001042491, intron 7 of 16)	intron (NM_001042491, intron 7 of 16)	15682.0	NM_021505	59008.0	Mm.332667	NM_021505	ENSMUSG00000029472	Anapc5	2510006G12Rik|AA408751|AA536819|AA986414|APC5|Anpc5	anaphase-promoting complex subunit 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67047904-4	chr10	67047801	67048001	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178606, intron 2 of 7)	intron (NM_178606, intron 2 of 7)	42826.0	NR_110511	102634101.0	Mm.445258	NR_110511	ENSMUSG00000112925	Gm31763	-	predicted gene, 31763	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-11475529-4	chr4	11475415	11475615	+	972.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10443.0	NM_001081183	66185.0	Mm.331487	NM_001081183	ENSMUSG00000040720	Virma	1110037F02Rik|4930422M05Rik|Kiaa1429|mKIAA1429	vir like m6A methyltransferase associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-34351187-1	chr6	34351087	34351287	+	558.0	f0_balb.idr	Intergenic	RMER10B|LTR|ERVL	-2959.0	NM_008012	14187.0	Mm.5378	NM_008012	ENSMUSG00000029762	Akr1b8	FR-1|Fgfrp|Fgrp	aldo-keto reductase family 1, member B8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-108780736-4	chr4	108780644	108780844	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347163, intron 1 of 18)	CpG	344.0	NM_001347163	230597.0	Mm.196776	NM_183300	ENSMUSG00000034557	Zfyve9	Madhip|NSP|SARA|SMADIP	zinc finger, FYVE domain containing 9	protein-coding	2.3330464590244	2.30773948332645	3.28021179130576	2.45917787339039	2.91955976298646	2.32453859954656	3.30471220929311	2.80564908890737	0.421690277091903	0.566220823600844	0.962163739245057
Merged-chr2-60209836-4	chr2	60209752	60209952	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020575)	promoter-TSS (NM_020575)	-84.0	NM_020575	57438.0	Mm.260635	NM_020575	ENSMUSG00000026977	March7	Axo|Axot|Gtrgeo17	membrane-associated ring finger (C3HC4) 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-43461462-2	chr1	43461362	43461562	+	546.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010879, intron 1 of 4)	intron (NM_010879, intron 1 of 4)	15711.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-94263130-3	chr2	94263037	94263237	+	724.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1738.0	NR_030431	735259.0		NR_030431	ENSMUSG00000076335	Mir670	Mirn670|mir-670|mmu-mir-670	microRNA 670	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-59023746-2	chr6	59023646	59023846	+	975.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153574, intron 1 of 17)	intron (NM_153574, intron 1 of 17)	756.0	NM_153574	58909.0	Mm.28813	NM_153574	ENSMUSG00000037709	Fam13a	AI462012|D430015B01Rik|FAM13A1|Precm1	family with sequence similarity 13, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-114753000-4	chr9	114752892	114753092	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	21789.0	NM_026036	67213.0	Mm.28858	NM_026036	ENSMUSG00000032434	Cmtm6	2810051A14Rik|AA536733|Cklfsf6	CKLF-like MARVEL transmembrane domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21169694-1	chr9	21169594	21169794	+	592.0	f1_c57bl6.idr	intron (NM_183408, intron 1 of 14)	B3A|SINE|B2	3980.0	NM_183408	18577.0	Mm.191749	NM_019798	ENSMUSG00000032177	Pde4a	D9Ertd60e|Dpde2	phosphodiesterase 4A, cAMP specific	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-116073118-4	chr6	116073004	116073204	+	993.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177412, intron 3 of 5)	intron (NM_177412, intron 3 of 5)	-78099.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-78509330-4	chr8	78509214	78509414	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009033)	promoter-TSS (NM_009033)	-14.0	NM_001282109	76775.0	Mm.334631	NM_029736	ENSMUSG00000031684	Slc10a7	2410193C02Rik|P7	solute carrier family 10 (sodium/bile acid cotransporter family), member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88950466-2	chr3	88950372	88950572	+	1000.0	f0_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022994)	promoter-TSS (NM_022994)	-190.0	NM_001164533	65111.0	Mm.29028	NM_022994	ENSMUSG00000068921	Dap3	4921514D13Rik|DAP-3|MRP-S29|S29mt	death associated protein 3	protein-coding	4.19428481635186	2.88316240940852	4.46925702515341	4.52118115417699	4.13890085370051	3.93011371960566	3.63566389343994	3.60573006380299	-0.430463559772608	0.392352431791093	0.881258234308592
Merged-chr12-112146504-4	chr12	112146441	112146641	+	843.025024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001097621, intron 1 of 15)	CpG-3550	333.0	NM_001097621	668303.0	Mm.313104	NM_001097621	ENSMUSG00000021294	Kif26a	mKIAA1236	kinesin family member 26A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45458383-7	chr7	45458333	45458533	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010240, intron 3 of 3)	intron (NM_010240, intron 3 of 3)	1453.0	NM_010240	14325.0	Mm.30357	NM_010240	ENSMUSG00000050708	Ftl1	Ftl|Ftl-1|L-ferritin	ferritin light polypeptide 1	protein-coding	1.76713557507778	1.18017270313413	2.45658875182872	1.13142498641863	2.48738643174935	1.66956257799503	2.38848675525662	1.87567980746219	0.977147555078422	0.372523496017046	0.865109408625856
Merged-chr16-65378471-4	chr16	65378339	65378539	+	980.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-142190.0	NM_008849	18736.0	Mm.355440	NM_008849	ENSMUSG00000004842	Pou1f1	GHF-1|Hmp1|Pit-1|Pit1|Pit1-rs1|dw|dwarf	POU domain, class 1, transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-32220689-2	chr19	32220589	32220789	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 5 of 9)	intron (NM_144792, intron 5 of 9)	-9676.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-93042098-2	chr16	93041998	93042198	+	948.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-216024.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-145806485-4	chr2	145806367	145806567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028724, intron 2 of 12)	intron (NM_028724, intron 2 of 12)	20351.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-99235133-4	chr5	99235026	99235226	+	940.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145839, intron 4 of 13)	intron (NM_145839, intron 4 of 13)	17801.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-13079008-2	chr6	13078908	13079108	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027992, intron 5 of 8)	intron (NM_027992, intron 5 of 8)	9249.0	NM_027992	71900.0	Mm.27742	NM_027992	ENSMUSG00000029571	Tmem106b	2310036D22Rik|5830455K21Rik|6430519M21Rik|AI428776|AI661344	transmembrane protein 106B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35914103-2	chr17	35913965	35914165	+	892.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347380, intron 1 of 3)	B1_Mus2|SINE|Alu	2375.0	NM_001361455	66973.0	Mm.29484	NM_025878	ENSMUSG00000024436	Mrps18b	2400002C15Rik|MRP-S18-2|S18mt-b	mitochondrial ribosomal protein S18B	protein-coding	0.0232159148539688	-0.319630340452491	-0.323471664311334	0.179467565919706	-0.330578939580055	0.0242548713667445	-0.322625866777321	-0.325908904372188	-1.51074464971045	0.550927024433309	1
Merged-chr4-124849823-2	chr4	124849723	124849923	+	561.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153566)	promoter-TSS (NM_153566)	741.0	NM_001347196	68920.0	Mm.272397	NM_001142727	ENSMUSG00000078570	1110065P20Rik	C530005M16Rik	RIKEN cDNA 1110065P20 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-94174805-2	chr13	94174705	94174905	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172589, intron 3 of 3)	intron (NM_172589, intron 3 of 3)	110476.0	NM_029153	107767.0	Mm.201455	NM_029153	ENSMUSG00000021687	Scamp1	4930505M11Rik|AI415563|AW122395	secretory carrier membrane protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-60870995-4	chr8	60870885	60871085	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19408.0	NM_028299	72612.0	Mm.25263	NM_028299	ENSMUSG00000038005	Hpf1	2700029M09Rik|C230006B22Rik|C4orf27	histone PARylation factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-46858021-2	chr1	46857921	46858121	+	578.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356417, intron 2 of 10)	B4|SINE|B4	-4403.0	NM_172653	227059.0	Mm.233889	NM_172653	ENSMUSG00000025986	Slc39a10	2900042E17Rik|5430433I10|Zip10|mKIAA1265	solute carrier family 39 (zinc transporter), member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-84409481-3	chr10	84409364	84409564	+	811.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004363, intron 2 of 6)	intron (NM_001004363, intron 2 of 6)	31007.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-62555391-2	chr9	62555291	62555491	+	855.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18347.0	NM_175484	235431.0	Mm.335229	NM_175484	ENSMUSG00000041729	Coro2b	CLIPINC|E130012P22Rik	coronin, actin binding protein, 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-55518121-2	chr12	55518021	55518221	+	967.8333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25474.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-44979252-3	chr2	44979131	44979331	+	669.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43946.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-71017105-3	chr12	71017020	71017220	+	943.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001081195, exon 2 of 24)	5' UTR (NM_001081195, exon 2 of 24)	1153.0	NM_001081195	238247.0	Mm.241601	NM_001081195	ENSMUSG00000048118	Arid4a	A630009N03|A630067N03Rik|Rbbp1	AT rich interactive domain 4A (RBP1-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-156035638-2	chr1	156035532	156035732	+	1000.0	f0_c57.idr|f1_c57bl6.idr	promoter-TSS (NM_001160019)	promoter-TSS (NM_001160019)	-32.0	NM_172843	240832.0	Mm.253335	NM_022329	ENSMUSG00000050565	Tor1aip2	1110020D10Rik|15kDa|A130072J07|AA103493|AW060462|AW610675|C77739|Ifrg15|Lull1	torsin A interacting protein 2	protein-coding	3.62364275441908	2.7044353379966	4.48420731507599	3.81981692763288	4.57264995359448	4.45804055287776	3.7303474501221	4.29751177418669	0.674239728773562	0.18146906378126	0.654882442524834
Merged-chr17-40824721-3	chr17	40824600	40824800	+	759.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011269, intron 1 of 9)	Lx8|LINE|L1	13551.0	NM_011269	19743.0	Mm.12961	NM_011269	ENSMUSG00000023926	Rhag	CD241|Rh50|Rh50A	Rhesus blood group-associated A glycoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-80853534-3	chr18	80853439	80853639	+	735.0	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	intron (NM_015805, intron 8 of 28)	RMER6A|LTR|ERVK	80519.0	NM_001201569	50771.0	Mm.247138	NM_015805	ENSMUSG00000024566	Atp9b	AA934181|Atpc2b|IIb|MMR	ATPase, class II, type 9B	protein-coding	4.00004066631394	4.29553995698965	3.24222289598582	3.81313777646966	2.62371365944258	4.89313250196396	3.02336121708791	3.69485001521393	-0.0465981196006566	0.938818094866395	0.998431161219273
Merged-chr17-78455315-4	chr17	78455213	78455413	+	788.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37161.0	NM_001285940	225020.0	Mm.236835	NM_199448	ENSMUSG00000056121	Fez2	9030616F16|D17Ertd315e	fasciculation and elongation protein zeta 2 (zygin II)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-132347117-2	chr7	132347017	132347217	+	708.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29889.0	NM_029935	77590.0	Mm.213582	NM_029935	ENSMUSG00000030930	Chst15	4631426J05Rik|BRAG|GalNAc4S-6ST|GalNAcS-6ST|MAd5|mKIAA0598	carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-124520732-4	chr8	124520628	124520828	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029746)	promoter-TSS (NM_029746)	-39.0	NM_029746	76332.0	Mm.240108	NM_029746	ENSMUSG00000031979	Cog2	1190002B08Rik|2700012E02Rik|C86089|Ldlc	component of oligomeric golgi complex 2	protein-coding	6.58918026530484	7.0021942359898	7.04110066956568	7.4467484240722	6.67150590361099	6.66898608873502	6.33236745452081	6.80577886475005	-0.443962304061405	0.0327357434688905	0.252635152319735
Merged-chr11-113471232-2	chr11	113471132	113471332	+	823.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027216, intron 4 of 9)	intron (NM_027216, intron 4 of 9)	94583.0	NM_001166503	69806.0	Mm.341021	NM_027216	ENSMUSG00000041654	Slc39a11	1810074D23Rik	solute carrier family 39 (metal ion transporter), member 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129565142-4	chr2	129564978	129565178	+	880.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27761.0	NM_001291020	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	0.159129297823627	1.07073507560491	0.175290689123143	0.755717471373459	0.160643239035905	0.184795309589818	0.177009043818605	0.763238074366496	-1.47182001767433	0.478316252609424	1
Merged-chr1-16226741-2	chr1	16226641	16226841	+	775.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D11|SINE|Alu	120859.0	NM_133832	98711.0	Mm.274376	NM_133832	ENSMUSG00000025921	Rdh10	3110069K09Rik|4921506A21Rik|AI875664|AW549993|D1Ertd762e|m366Asp	retinol dehydrogenase 10 (all-trans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-68048932-4	chr5	68048831	68049031	+	831.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001018019, intron 1 of 3)	intron (NM_001018019, intron 1 of 3)	17096.0	NM_001018019	433899.0	Mm.332422	NM_001018019	ENSMUSG00000068082	Grxcr1	Tg(Eno2-Gabrb3)0370Brll|pi|tde	glutaredoxin, cysteine rich 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-76763626-4	chr11	76763527	76763727	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016810)	promoter-TSS (NM_016810)	-49.0	NM_001356321	53334.0	Mm.20931	NM_016810	ENSMUSG00000010392	Gosr1	AI414660|AI426320|BB145494|GOS-28|GOSRI|GS28	golgi SNAP receptor complex member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-120838507-1	chr6	120838407	120838607	+	617.0	f1_balb.idr	intron (NM_153516, intron 1 of 6)	B1_Mus2|SINE|Alu	2277.0	NM_153516	94044.0	Mm.27990	NM_153516	ENSMUSG00000009112	Bcl2l13	BCL-RAMBO|E430016C20Rik|Mil-1|Mil1	BCL2-like 13 (apoptosis facilitator)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-46849950-4	chr1	46849847	46850047	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356416, intron 1 of 10)	intron (NM_001356416, intron 1 of 10)	3671.0	NM_001356416	227059.0	Mm.233889	NM_172653	ENSMUSG00000025986	Slc39a10	2900042E17Rik|5430433I10|Zip10|mKIAA1265	solute carrier family 39 (zinc transporter), member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3511674-4	chr4	3511583	3511783	+	912.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25407.0	NR_037306	100499523.0		NR_037306	ENSMUSG00000094253	Mir3471-2	mmu-mir-3471-2	microRNA 3471-2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-8941886-4	chr19	8941789	8941989	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011842)	promoter-TSS (NM_011842)	-31.0	NM_011842	23942.0	Mm.25339	NM_011842	ENSMUSG00000071646	Mta2	AW550797|Mata1l1|Mta1l1|mmta2	metastasis-associated gene family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-174125619-1	chr2	174125519	174125719	+	661.0	f1_balb.idr	non-coding (NR_040530, exon 4 of 4)	non-coding (NR_040530, exon 4 of 4)	15268.0	NM_213733	228961.0	Mm.295629	NM_213733	ENSMUSG00000039263	Npepl1	BC023239|C85514|mKIAA1974	aminopeptidase-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-37346189-2	chr7	37346089	37346289	+	645.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	423563.0	NM_172385	243937.0	Mm.322505	NM_172385	ENSMUSG00000043456	Zfp536	9630010P11Rik|Znf536|mKIAA0390	zinc finger protein 536	protein-coding	-0.102913093058637	-0.343504576656722	-0.347306457796448	-0.350228745622148	0.102699702373412	0.135475064346721	-0.34646930385911	-0.349718918819171	1.92289883749069	0.449427722051649	1
Merged-chr7-25783286-2	chr7	25783186	25783386	+	592.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009465, intron 4 of 19)	B1_Mur4|SINE|Alu	5447.0	NM_001190974	26362.0	Mm.4128	NM_009465	ENSMUSG00000002602	Axl	AI323647|Ark|Tyro7|Ufo	AXL receptor tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-28802618-2	chr6	28802518	28802718	+	593.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019776, intron 16 of 23)	intron (NM_019776, intron 16 of 23)	29129.0	NM_138682	192198.0	Mm.443660	NM_138682	ENSMUSG00000049939	Lrrc4	MBAG1|NGL-2|NGL2|NLG-2|Nag14	leucine rich repeat containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-62896060-4	chr10	62895972	62896172	+	697.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8748.0	NM_001253857	52463.0	Mm.17774	NM_027384	ENSMUSG00000047146	Tet1	2510010B09Rik|AA517754|BB001228|Cxxc6|D10Ertd17e|LCX|mKIAA1676	tet methylcytosine dioxygenase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127942284-2	chr7	127942184	127942384	+	799.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001319147, intron 5 of 14)	B2_Mm2|SINE|B2	4441.0	NM_001319147	77613.0	Mm.334253	NM_001081374	ENSMUSG00000070371	Prss36	C330007D15Rik	protease, serine 36	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-47234728-3	chr13	47234610	47234810	+	910.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146042, intron 4 of 7)	PB1D7|SINE|Alu	40707.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-86370253-2	chr6	86370153	86370353	+	795.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_025591)	TTS (NM_025591)	-1287.0	NM_026506	68011.0	Mm.276802	NM_026506	ENSMUSG00000057278	Snrpg	2810024K17Rik|AL022803|SMG|sm-G|snRNP-G	small nuclear ribonucleoprotein polypeptide G	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-5521577-4	chr11	5521442	5521642	+	975.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013842, intron 1 of 4)	CpG	901.0	NM_001271730	22433.0	Mm.469937	NM_013842	ENSMUSG00000020484	Xbp1	D11Ertd39e|TREB-5|TREB5|XBP-1	X-box binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-27367704-1	chr14	27367604	27367804	+	746.0	f0_c57.idr	intron (NM_027871, intron 3 of 10)	intron (NM_027871, intron 3 of 10)	6315.0	NM_001289688	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	3.20477721876519	3.11253219749459	3.679418859309	1.24161352297758	1.86002352281502	2.6065812089931	2.04328009431137	1.24878710595006	-1.99001327327116	0.034901739033088	0.264257517518095
Merged-chr10-127571881-2	chr10	127571781	127571981	+	659.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 33 of 88)	intron (NM_008512, intron 33 of 88)	-37322.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-53007651-4	chr9	53007537	53007737	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR44B|LTR|ERVK	240475.0	NM_029936	77591.0	Mm.133560	NM_029936	ENSMUSG00000053289	Ddx10	4632415A01Rik|AI646054	DEAD (Asp-Glu-Ala-Asp) box polypeptide 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81605192-4	chr10	81605105	81605305	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1103.0	NR_030677	268319.0	Mm.131825	NM_001033363	ENSMUSG00000074862	BC025920	-	zinc finger protein pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98389560-2	chr11	98389460	98389660	+	566.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001033537, exon 8 of 8)	3' UTR (NM_001033537, exon 8 of 8)	2958.0	NM_008890	18948.0	Mm.57030	NM_008890	ENSMUSG00000038216	Pnmt	Pent	phenylethanolamine-N-methyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-46066360-2	chr10	46066260	46066460	+	783.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx10|LINE|L1	-178388.0	NR_028274	100302593.0		NR_028274	ENSMUSG00000095118	Snord14d	Gm23710	small nucleolar RNA, C/D box 14D	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124049017-4	chr5	124048933	124049133	+	873.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-16773.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	3.04942449551774	2.76845397226804	2.52686557693441	2.94323881521416	3.57214850113822	2.78923676977669	2.94462468042972	3.83890947613781	0.905446606469841	0.156910021045151	0.613360045340919
Merged-chr11-82991761-2	chr11	82991661	82991861	+	869.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172796)	promoter-TSS (NM_172796)	69.0	NM_172796	237886.0	Mm.270253	NM_172796	ENSMUSG00000069793	Slfn9	9830137M10Rik	schlafen 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84192778-4	chr8	84192672	84192872	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-13811.0	NR_029821	723819.0		NR_029821	ENSMUSG00000065483	Mir181c	Mirn181c|mir-181c	microRNA 181c	ncRNA	3.27396878965787	3.58176886240299	3.61087831667878	3.4448901842507	3.43193407720985	2.34069635224781	3.02437380337852	3.30957721018333	-0.615547414045893	0.29722499833618	0.800256161319442
Merged-chr7-99947600-3	chr7	99947501	99947701	+	810.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175388, intron 2 of 5)	intron (NM_175388, intron 2 of 5)	32857.0	NM_175388	108937.0	Mm.323087	NM_175388	ENSMUSG00000058761	Rnf169	2900057K09Rik	ring finger protein 169	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-108967165-3	chr7	108967035	108967235	+	853.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32720.0	NM_025344	66085.0	Mm.182962	NM_025344	ENSMUSG00000031029	Eif3f	0610037M02Rik|AA409853|Eif3s5	eukaryotic translation initiation factor 3, subunit F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-22019606-7	chr14	22019513	22019713	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028275)	promoter-TSS (NM_028275)	-99.0	NM_028275	76633.0	Mm.489898	NM_028275	ENSMUSG00000063458	Lrmda	1700112E06Rik|2700009F18Rik	leucine rich melanocyte differentiation associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-40708737-2	chr3	40708637	40708837	+	764.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178386)	promoter-TSS (NM_178386)	-134.0	NM_178386	73333.0	Mm.78691	NM_178386	ENSMUSG00000069041	Slc25a31	1700034J06Rik|Ant4|Sfec	solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 31	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-43073113-3	chr17	43072981	43073181	+	798.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178589, intron 4 of 5)	intron (NM_178589, intron 4 of 5)	56526.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	-1.50832412844319	-1.15653482897485	-1.48498891875638	-1.49329841040289	-1.50597592323229	-1.31351177469185	-1.482698903433	-1.49181101537104	-0.842696192047838	0.805880655911438	1
Merged-chr12-36383503-2	chr12	36383403	36383603	+	619.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289503, intron 1 of 9)	intron (NM_001289503, intron 1 of 9)	1356.0	NM_001289503	75847.0	Mm.261764	NM_178629	ENSMUSG00000043153	Ispd	4930579E17Rik|AV040780	isoprenoid synthase domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-8778896-4	chr3	8778829	8779029	+	663.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-111891.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46136516-3	chr8	46136424	46136624	+	847.305542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	-12378.0	NM_207213	102141.0	Mm.267258	NM_207213	ENSMUSG00000038291	Snx25	AI661919|Gm1699|Gm173|Sbbi31	sorting nexin 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-11990094-4	chr4	11990002	11990202	+	951.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040577, intron 4 of 4)	intron (NR_040577, intron 4 of 4)	23528.0	NR_040577	100503636.0	Mm.209078	NR_040577		1700123M08Rik	1600025K15Rik	RIKEN cDNA 1700123M08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-48992811-8	chr16	48992683	48992883	+	966.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027341, intron 1 of 30)	intron (NM_027341, intron 1 of 30)	1329.0	NM_027341	224170.0	Mm.275138	NM_027341	ENSMUSG00000064061	Dzip3	2310047C04Rik|2A-HUB|6430549P11Rik|A230104G20	DAZ interacting protein 3, zinc finger	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-147579523-2	chr4	147579423	147579623	+	633.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001014397, intron 4 of 5)	RLTR45|LTR|ERVK	26246.0	NM_001014397	433804.0	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154	zinc finger protein 985	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-90219827-3	chr16	90219736	90219936	+	778.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011434)	promoter-TSS (NM_011434)	-906.0	NM_011434	20655.0	Mm.276325	NM_011434	ENSMUSG00000022982	Sod1	B430204E11Rik|Cu/Zn-SOD|CuZnSOD|Ipo-1|Ipo1|SODC|Sod-1	superoxide dismutase 1, soluble	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75574163-2	chr11	75574063	75574263	+	938.25	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_173388, exon 14 of 14)	3' UTR (NM_173388, exon 14 of 14)	-13916.0	NM_008850	18738.0	Mm.3128	NM_008850	ENSMUSG00000017781	Pitpna	Pitpn|vb|vibrator	phosphatidylinositol transfer protein, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5843830-5	chr19	5843721	5843921	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_003513, exon 1 of 1)	non-coding (NR_003513, exon 1 of 1)	1657.0	NR_131212	66961.0	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-165198251-4	chr1	165198075	165198275	+	757.133362	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3737.0	NR_151712	108735.0	Mm.288369	NM_145512	ENSMUSG00000040848	Sft2d2	2010005O13Rik|AI506168|AW561909|cI-45	SFT2 domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-107597775-4	chr7	107597686	107597886	+	954.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008905, intron 1 of 24)	intron (NM_008905, intron 1 of 24)	2735.0	NM_008905	19024.0	Mm.2817	NM_008905	ENSMUSG00000036528	Ppfibp2	Cclp1	PTPRF interacting protein, binding protein 2 (liprin beta 2)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90441267-2	chr2	90441167	90441367	+	562.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 21 of 23)	intron (NM_008982, intron 21 of 23)	37907.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-65112975-4	chr14	65112901	65113101	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-14895.0	NM_001360385	54616.0	Mm.103748	NM_018788	ENSMUSG00000021978	Extl3	2900009G18Rik|AU040105|Ext1l|mKIAA0519	exostoses (multiple)-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-70197854-4	chr10	70197753	70197953	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6811.0	NM_001304739	69563.0	Mm.64672	NM_001304739	ENSMUSG00000019933	Mrln	2310015B20Rik|Linc-RAM|Mln	myoregulin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150060160-3	chr4	150060041	150060241	+	991.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8313.0	NR_029751	723848.0		NR_029751	ENSMUSG00000065493	Mir34a	Mirn34a|mir-34a|mmu-mir-34a	microRNA 34a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-155095921-3	chr1	155095883	155096083	+	856.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010500)	TTS (NM_010500)	3653.0	NM_010500	15939.0	Mm.12246	NM_010500	ENSMUSG00000056708	Ier5	-	immediate early response 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-118390240-4	chr2	118390162	118390362	+	907.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177806, intron 1 of 37)	MER46C|DNA|TcMar-Tigger	1150.0	NM_001177806	27103.0	Mm.217616	NM_013719	ENSMUSG00000005102	Eif2ak4	2610011M03|GCN2|MGCN2	eukaryotic translation initiation factor 2 alpha kinase 4	protein-coding	2.9591746467247	2.52455058455699	1.85402700853884	2.85194325301059	2.51596549391476	3.63247481637092	3.05672104646499	3.35033961705459	1.03595916704512	0.145713001721456	0.596091332081597
Merged-chr4-99227408-1	chr4	99227308	99227508	+	650.0	f1_c57bl6.idr	intron (NM_175029, intron 7 of 10)	intron (NM_175029, intron 7 of 10)	33261.0	NM_001145967	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	0.755198630145389	1.00988530445753	0.398014105323415	0.692973993095982	0.861810184650081	0.762089770932538	0.399553509941823	0.393569128791572	-0.644987006230765	0.709775506983047	1
Merged-chr2-4499497-4	chr2	4499399	4499599	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 5 of 23)	intron (NM_001177843, intron 5 of 23)	-60255.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81559533-6	chr10	81559452	81559652	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_074087, exon 1 of 7)	non-coding (NR_074087, exon 1 of 7)	108.0	NM_001276288	14797.0	Mm.180013	NM_010347	ENSMUSG00000054452	Aes	AL024115|Esp1|Grg|Grg-5|Grg5|Tle5	amino-terminal enhancer of split	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-48842443-4	chr13	48842347	48842547	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011078, intron 1 of 21)	ORR1F|LTR|ERVL-MaLR	28438.0	NM_011078	18676.0	Mm.486213	NM_011078	ENSMUSG00000038025	Phf2	GRC5	PHD finger protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-107365785-2	chr11	107365685	107365885	+	847.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 1 of 9)	intron (NR_153311, intron 1 of 9)	104935.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-52305106-4	chr14	52305030	52305230	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019721)	promoter-TSS (NM_019721)	-6.0	NM_019721	56335.0	Mm.271759	NM_019721	ENSMUSG00000022160	Mettl3	2310024F18Rik|M6A|Spo8	methyltransferase like 3	protein-coding	5.8995050869347	5.27551088410678	5.87268465857891	5.99207270283033	5.3530569728781	5.10726529619905	5.32802449220337	5.39609553096623	-0.555106801983675	0.0421346696681833	0.294027782093174
Merged-chr4-32518525-1	chr4	32518425	32518625	+	993.0	f0_balb.idr	intron (NM_001109661, intron 2 of 4)	L2a|LINE|L2	53137.0	NR_026843	414068.0	Mm.389550	NR_026843	ENSMUSG00000086150	Bach2os	-	BTB and CNC homology 2, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-39520546-3	chr10	39520452	39520652	+	959.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122893, intron 5 of 13)	intron (NM_001122893, intron 5 of 13)	-92382.0	NM_134000	103213.0	Mm.436686	NM_134000	ENSMUSG00000019842	Traf3ip2	AI429613|Act1|CIKS	TRAF3 interacting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-174614131-4	chr2	174614034	174614234	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29400.0	NM_001099328	100043757.0	Mm.48711	NM_001099328	ENSMUSG00000050600	Zfp831	-	zinc finger protein 831	protein-coding	3.92054906314799	5.0208179384853	3.63519587560611	4.8242079317365	4.4880155900127	5.12789685081495	4.69921161104352	4.21196692855168	0.251097241796539	0.563959330017455	0.960367595640396
Merged-chr15-80094124-1	chr15	80094024	80094224	+	553.0	f1_c57bl6.idr	intron (NM_207708, intron 1 of 3)	MER81|DNA|hAT-Blackjack	2790.0	NM_207708	20972.0	Mm.230301	NM_009303	ENSMUSG00000022415	Syngr1	R75468|Syngr1b|p29	synaptogyrin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-70657877-2	chr9	70657777	70657977	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172772)	promoter-TSS (NM_172772)	-703.0	NM_172772	235461.0	Mm.170855	NM_172772	ENSMUSG00000042444	Mindy2	AI465301|B230380D07Rik|Fam63b|mKIAA1164	MINDY lysine 48 deubiquitinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-28202324-3	chr11	28202214	28202414	+	724.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR26_Mus|LTR|ERVK	382010.0	NM_001166661	216613.0	Mm.93759	NM_181577	ENSMUSG00000032878	Ccdc85a	-	coiled-coil domain containing 85A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-57429415-4	chr8	57429315	57429515	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26508.0	NM_009136	20284.0	Mm.12886	NM_009136	ENSMUSG00000031610	Scrg1	AW124307	scrapie responsive gene 1	protein-coding	5.14936987700818	4.60796564844565	4.89336332976594	5.09385557949292	5.2359955784792	5.19903262809656	4.70347649907881	5.29674161177254	0.203126321776398	0.525205168914792	0.948340152465298
Merged-chr2-91441848-4	chr2	91441770	91441970	+	881.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175123, intron 1 of 8)	intron (NM_175123, intron 1 of 8)	2844.0	NM_001311144	228356.0	Mm.386861	NM_175123	ENSMUSG00000040591	1110051M20Rik	AI586322	RIKEN cDNA 1110051M20 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-38081967-3	chr5	38081840	38082040	+	786.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359398, intron 1 of 9)	intron (NM_001359398, intron 1 of 9)	42710.0	NM_026959	71116.0	Mm.18959	NM_026959	ENSMUSG00000029125	Stx18	1810035L21Rik|4933425D03Rik|AU041562	syntaxin 18	protein-coding	-0.539072095141396	-1.17607782048307	-1.18720726126045	-1.19634931528472	-1.20196491063698	-1.17366602423904	-1.18468779981884	-1.19471289198531	-2.68787187143179	0.435473844436726	1
Merged-chr2-173708115-2	chr2	173708015	173708215	+	984.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6967.0	NR_105758	102465173.0		NR_105758	ENSMUSG00000098588	Mir6340	Gm27909|mmu-mir-6340	microRNA 6340	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-21034618-2	chr2	21034518	21034718	+	738.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	65744.0	NR_033225	433408.0	Mm.386941	NR_033225		Gm13375	-	predicted gene 13375	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-134098824-4	chr4	134098717	134098917	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3744.0	NM_013706	23833.0	Mm.24130	NM_013706	ENSMUSG00000000682	Cd52	AI463198|B7|B7-Ag|CAMPATH-1|CLS1|MB7	CD52 antigen	protein-coding	6.07894477811777	5.93616366294268	6.07646109650973	5.79479381384313	6.2034617138281	5.81598999253365	6.64547305290764	6.11214248741507	0.274826652039798	0.250420273905646	0.748509191602971
Merged-chr12-111427920-4	chr12	111427811	111428011	+	918.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289487, intron 9 of 13)	intron (NM_001289487, intron 9 of 13)	10466.0	NM_001289488	74190.0	Mm.248640	NM_028807	ENSMUSG00000021280	Exoc3l4	1200009I06Rik|1600013K19Rik	exocyst complex component 3-like 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-83568644-2	chr17	83568544	83568744	+	743.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54311.0	NM_001159529	20463.0	Mm.30072	NM_009187	ENSMUSG00000024248	Cox7a2l	COX7AR|COX7RP|EB1|SIG-81|SIG81|Silg81	cytochrome c oxidase subunit VIIa polypeptide 2-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-54005688-3	chr5	54005572	54005772	+	856.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081103, intron 1 of 11)	intron (NM_001081103, intron 1 of 11)	7149.0	NM_001081103	116873.0	Mm.265985	NM_054083	ENSMUSG00000039156	Stim2	-	stromal interaction molecule 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-4616251-3	chr8	4616169	4616369	+	781.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145591, intron 1 of 3)	intron (NM_145591, intron 1 of 3)	3099.0	NM_145591	233987.0	Mm.102799	NM_145591	ENSMUSG00000058748	Zfp958	-	zinc finger protein 958	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-100409441-4	chr3	100409372	100409572	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16933.0	NR_040543	73806.0	Mm.396549	NR_040543	ENSMUSG00000086923	4930406D18Rik	-	RIKEN cDNA 4930406D18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21137420-4	chr9	21137326	21137526	+	827.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6151.0	NM_001205312	54721.0	Mm.20249	NM_018793	ENSMUSG00000032175	Tyk2	JTK1	tyrosine kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141994190-4	chr4	141994056	141994256	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177868, intron 2 of 31)	GA-rich|Low_complexity|Low_complexity	11164.0	NR_040672	545691.0	Mm.332015	NR_040672	ENSMUSG00000085424	Fhad1os1	Gm13037	forkhead-associated (FHA) phosphopeptide binding domain 1, opposite strand 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127310119-4	chr10	127310104	127310304	+	793.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003913, intron 3 of 20)	intron (NM_001003913, intron 3 of 20)	1582.0	NM_001003913	216443.0	Mm.28173	NM_001003913	ENSMUSG00000040354	Mars	Metrs|Mtrns	methionine-tRNA synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-160375036-4	chr2	160374950	160375150	+	925.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7985.0	NM_010658	16658.0	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-80291387-4	chr17	80291309	80291509	+	832.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163759)	promoter-TSS (NM_001163759)	-933.0	NM_001163759	106794.0	Mm.12412	NM_198942	ENSMUSG00000035051	Dhx57	AW494914	DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-9833641-4	chr3	9833559	9833759	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001195031)	promoter-TSS (NM_001195031)	20.0	NM_053182	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-29454457-2	chr19	29454357	29454557	+	653.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021396, intron 4 of 5)	intron (NM_021396, intron 4 of 5)	43538.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-49521708-4	chr18	49521615	49521815	+	981.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45-int|LTR|ERVK	-1574.0	NR_033785	67321.0	Mm.245802	NR_033785	ENSMUSG00000100297	1700044K03Rik	-	RIKEN cDNA 1700044K03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-185206347-2	chr1	185206247	185206447	+	657.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163754, intron 1 of 34)	L2a|LINE|L2	2179.0	NM_001163754	98732.0	Mm.275841	NM_172649	ENSMUSG00000039318	Rab3gap2	1110059F07Rik|2010002H18Rik|5830469C09|AI851069|AW743433|RAB3-GAP150|mKIAA0839	RAB3 GTPase activating protein subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-113663209-2	chr8	113663109	113663309	+	599.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F1|SINE|Alu	13249.0	NR_136914	102631810.0	Mm.412563	NR_136914	ENSMUSG00000110582	Gm30052	-	predicted gene, 30052	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-49728051-3	chr11	49727954	49728154	+	710.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15332.0	NM_212484	104625.0	Mm.247113	NM_212484	ENSMUSG00000020362	Cnot6	CCR4	CCR4-NOT transcription complex, subunit 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-36794215-3	chr15	36794147	36794347	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_011740, exon 1 of 7)	5' UTR (NM_011740, exon 1 of 7)	291.0	NM_011740	22631.0	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-15399646-2	chr7	15399546	15399746	+	686.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3A|LINE|L1	10795.0	NM_145708	246792.0	Mm.26391	NM_145708	ENSMUSG00000074369	Obox2	-	oocyte specific homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-31570299-2	chr17	31570218	31570418	+	566.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016670, intron 1 of 10)	intron (NM_016670, intron 1 of 10)	5545.0	NM_016670	18771.0	Mm.259295	NM_016670	ENSMUSG00000006705	Pknox1	D17Wsu76e|PREP1	Pbx/knotted 1 homeobox	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-113770593-2	chr5	113770493	113770693	+	673.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_151532, intron 1 of 16)	intron (NR_151532, intron 1 of 16)	1807.0	NR_151532	53890.0	Mm.29594	NM_016926	ENSMUSG00000018974	Sart3	AU045857|mKIAA0156	squamous cell carcinoma antigen recognized by T cells 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-40137846-2	chr10	40137746	40137946	+	703.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 1 of 5)	intron (NM_001114332, intron 1 of 5)	4408.0	NM_028247	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-98778484-4	chr10	98778409	98778609	+	673.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-136133.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-29431159-4	chr19	29431041	29431241	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021396, intron 2 of 5)	intron (NM_021396, intron 2 of 5)	20222.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-9711209-3	chr3	9711110	9711310	+	813.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053182, intron 2 of 7)	intron (NM_053182, intron 2 of 7)	-101125.0	NM_133218	170753.0	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-87015760-3	chr3	87015675	87015875	+	717.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-16435.0	NM_007639	12479.0	Mm.1894	NM_007639	ENSMUSG00000028076	Cd1d1	AI747460|CD1.1|Cd1a|Cd1d|Ly-38	CD1d1 antigen	protein-coding	-1.50682290038489	-1.31787766594575	-1.48393289872978	-1.33595151133619	-1.50451949613502	-1.31572733451463	-1.48168657417364	-1.49062483785939	-0.740464490307937	0.815857097700362	1
Merged-chr5-82087112-2	chr5	82087012	82087212	+	824.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A0-int|LTR|ERVL-MaLR	37601.0	NR_138557	67327.0	Mm.87058	NR_138557		1700031L13Rik	-	RIKEN cDNA 1700031L13 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-68057746-2	chr18	68057646	68057846	+	625.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_172631, intron 1 of 5)	intron (NM_172631, intron 1 of 5)	124573.0	NM_172631	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-68030839-3	chr11	68030741	68030941	+	724.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018768, intron 6 of 7)	HAL1ME|LINE|L1	64383.0	NM_018768	55943.0	Mm.3973	NM_018768	ENSMUSG00000020903	Stx8	0610007H08Rik|1110002H11Rik|4930571E13Rik|CARB	syntaxin 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-133553459-2	chr2	133553359	133553559	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007553, intron 1 of 2)	CpG	1300.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-75301569-2	chr10	75301469	75301669	+	595.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153406, intron 13 of 15)	intron (NM_153406, intron 13 of 15)	-15308.0	NM_009630	11540.0	Mm.333734	NM_009630	ENSMUSG00000020178	Adora2a	A2AAR|A2aR|AA2AR	adenosine A2a receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-10249582-4	chr3	10249478	10249678	+	867.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357159, intron 3 of 4)	IAPEY4_LTR|LTR|ERVK	4647.0	NM_001357161	75497.0	Mm.47052	NM_029310	ENSMUSG00000027530	Fabp12	1700008G05Rik	fatty acid binding protein 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165963200-2	chr2	165963100	165963300	+	558.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-29437.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-85231332-1	chr1	85231232	85231432	+	570.0	f1_balb.idr	Intergenic	L1Md_F|LINE|L1	31721.0	NM_001081746	665378.0	Mm.440912	NM_001081746		Gm7609	EG665378	predicted pseudogene 7609	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-91121900-2	chr10	91121800	91122000	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133668, intron 3 of 7)	intron (NM_133668, intron 3 of 7)	2063.0	NM_133668	18674.0	Mm.298	NM_133668	ENSMUSG00000061904	Slc25a3	5730556H19Rik|PTP|Phc	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125193181-2	chr6	125193040	125193240	+	554.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025595, intron 2 of 2)	intron (NM_025595, intron 2 of 2)	940.0	NM_025595	66493.0	Mm.138749	NM_025595	ENSMUSG00000030335	Mrpl51	2610511M02Rik|CDA09|HSPC241|Mrp64	mitochondrial ribosomal protein L51	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-102070023-4	chr5	102069944	102070144	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172882)	promoter-TSS (NM_172882)	-123.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-30258503-2	chr12	30258403	30258603	+	598.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001324520, intron 8 of 16)	intron (NM_001324520, intron 8 of 16)	114872.0	NM_172951	268534.0	Mm.279765	NM_172951	ENSMUSG00000020672	Sntg2	2210008K22Rik|9530013L23|BB121248|G2syn|Syn5	syntrophin, gamma 2	protein-coding	-0.71799741296482	-0.70708557642391	-0.710658121670512	-0.39858988842304	-0.717315679162312	-0.706280611168025	-0.0081218306882751	-0.712934152705969	1.42720281504518	0.625386426793862	1
Merged-chr2-35499134-4	chr2	35499068	35499268	+	794.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37719.0	NM_001145821	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-38913919-1	chr6	38913819	38914019	+	556.0	f1_c57bl6.idr	Intergenic	Intergenic	-5067.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-86952838-2	chr10	86952738	86952938	+	848.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_138673, intron 15 of 68)	B3|SINE|B2	55104.0	NM_138673	192188.0	Mm.279611	NM_138673	ENSMUSG00000035459	Stab2	FEEL-2|FELL|MFEEL-2|STAB-2	stabilin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80175724-3	chr10	80175663	80175863	+	911.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_027207)	TTS (NM_027207)	2819.0	NM_027207	69770.0	Mm.302754	NM_027207	ENSMUSG00000035595	1600002K03Rik	-	RIKEN cDNA 1600002K03 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-77796884-4	chr18	77796784	77796984	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_152167)	promoter-TSS (NR_152167)	-494.0	NR_152167	619308.0	Mm.490456	NM_001033812		F830208F22Rik	-	RIKEN cDNA F830208F22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99415970-4	chr15	99415863	99416063	+	850.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	22744.0	NM_001171035	110213.0	Mm.16769	NM_026669	ENSMUSG00000023010	Tmbim6	5031406P05Rik|Bi1|Tegt	transmembrane BAX inhibitor motif containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-189792751-4	chr1	189792679	189792879	+	938.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008976, intron 2 of 18)	intron (NM_008976, intron 2 of 18)	64511.0	NM_008976	19250.0	Mm.4498	NM_008976	ENSMUSG00000026604	Ptpn14	C130080N23Rik|PTP36	protein tyrosine phosphatase, non-receptor type 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-88101594-2	chr15	88101504	88101704	+	1000.0	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-213270.0	NR_045281	328579.0	Mm.146839	NR_045281	ENSMUSG00000116331	B230214G05Rik	B230214G05	RIKEN cDNA B230214G05 gene	ncRNA	1.83810856605438	2.61040632581174	1.4917075045987	1.42286466396341	4.95109166376511	4.35503252791029	4.5812322785582	4.91074219759861	4.62980819628955	1.00537815084921e-10	2.17997476877508e-08
Merged-chr11-118998778-3	chr11	118998682	118998882	+	935.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10601.0	NM_001359574	238011.0	Mm.244114	NM_001030291	ENSMUSG00000046697	Enpp7	Alk-SMase|Gm254	ectonucleotide pyrophosphatase/phosphodiesterase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101010601-2	chr11	101010483	101010683	+	794.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001243049, intron 1 of 20)	intron (NM_001243049, intron 1 of 20)	1131.0	NM_001243051	11975.0	Mm.340818	NM_016920	ENSMUSG00000019302	Atp6v0a1	AA959968|ATP6a1|Atp6n1|Atp6n1a|Atpv0a1|Vpp-1|Vpp1	ATPase, H+ transporting, lysosomal V0 subunit A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-60890209-4	chr19	60890106	60890306	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_018869, exon 1 of 16)	5' UTR (NM_018869, exon 1 of 16)	457.0	NM_018869	14773.0	Mm.279400	NM_018869	ENSMUSG00000003228	Grk5	Gprk5	G protein-coupled receptor kinase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-72301998-2	chr1	72301898	72302098	+	598.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_175564, exon 3 of 3)	3' UTR (NM_175564, exon 3 of 3)	-5423.0	NM_001357520	22596.0	Mm.246952	NM_009533	ENSMUSG00000026187	Xrcc5	AI314015|CTC85|CTCBF|Ku80|Ku86	X-ray repair complementing defective repair in Chinese hamster cells 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-60753193-1	chr19	60753093	60753293	+	581.0	f1_c57bl6.idr	Intergenic	Intergenic	-2794.0	NM_178421	332397.0	Mm.186390	NM_178421	ENSMUSG00000072437	Nanos1	NOS-1	nanos C2HC-type zinc finger 1	protein-coding	0.592839269720703	0.0370420287997741	0.0311480785711627	0.338622083972701	0.833730479603153	0.0383687324048829	0.0324492325320083	0.0273876946488782	0.159460835996575	0.942529097958462	1
Merged-chr13-60650145-4	chr13	60650021	60650221	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	47910.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-123863808-4	chr9	123863722	123863922	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-1793.0	NM_011798	23832.0	Mm.390241	NM_011798	ENSMUSG00000060509	Xcr1	Ccxcr1|Gpr5|mXcr1	chemokine (C motif) receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118881740-2	chr9	118881640	118881840	+	572.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 12 of 13)	intron (NM_001113514, intron 12 of 13)	-44796.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-20159137-4	chr11	20159036	20159236	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42276.0	NM_008996	19324.0	Mm.271944	NM_008996	ENSMUSG00000020149	Rab1a	Gtbp|Rab-1|Rab1|Ypt1|mKIAA3012	RAB1A, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85484191-2	chr12	85484091	85484291	+	999.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	10301.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-8950668-3	chr3	8950567	8950767	+	625.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009412, intron 2 of 5)	RMER15|LTR|ERVL	13479.0	NM_001025262	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-44996319-2	chr2	44996219	44996419	+	552.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001355289, exon 9 of 11)	exon (NM_001355289, exon 9 of 11)	26858.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-59224633-4	chr11	59224515	59224715	+	844.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007476, intron 1 of 4)	intron (NM_007476, intron 1 of 4)	3547.0	NM_001130408	11840.0	Mm.371546	NM_007476	ENSMUSG00000048076	Arf1	-	ADP-ribosylation factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-86079077-4	chr12	86078981	86079181	+	942.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009368)	promoter-TSS (NM_009368)	-40.0	NM_009368	21809.0	Mm.3992	NM_009368	ENSMUSG00000021253	Tgfb3	TGF-beta-3|Tgfb-3	transforming growth factor, beta 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-4492718-4	chr2	4492630	4492830	+	969.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 4 of 23)	intron (NM_001177843, intron 4 of 23)	-67024.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-47275015-2	chr11	47274915	47275115	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011891, intron 2 of 7)	intron (NM_011891, intron 2 of 7)	104287.0	NM_011891	24052.0	Mm.338890	NM_011891	ENSMUSG00000020354	Sgcd	35kDa|delta-SG	sarcoglycan, delta (dystrophin-associated glycoprotein)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-57279811-4	chr17	57279664	57279864	+	833.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163816, intron 1 of 25)	CT-rich|Low_complexity|Low_complexity	664.0	NM_001163815	22324.0	Mm.248172	NM_011691	ENSMUSG00000034116	Vav1	Vav|vav-T	vav 1 oncogene	protein-coding	1.10501657060596	0.512201754527947	1.23719922792764	0.494579734105867	0.912294050235429	0.514419603186639	1.35024825206454	0.495932969306092	-0.0514982370089345	0.976287285252323	0.998431161219273
Merged-chr7-45107223-3	chr7	45107118	45107318	+	870.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3396.0	NM_010189	14132.0	Mm.3303	NM_010189	ENSMUSG00000003420	Fcgrt	FcRn	Fc receptor, IgG, alpha chain transporter	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-113800306-2	chr9	113800206	113800406	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286603, intron 1 of 4)	L2|LINE|L2	6976.0	NM_001286603	76499.0	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-6152413-3	chr7	6152303	6152503	+	825.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013012, intron 1 of 2)	intron (NM_001013012, intron 1 of 2)	3568.0	NM_001013012	67109.0	Mm.3254	NM_001013012	ENSMUSG00000046792	Zfp787	2210018M03Rik|Znf787	zinc finger protein 787	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-120510074-2	chr5	120509974	120510174	+	651.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-1118.0	NM_001177595	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85605350-2	chr12	85605250	85605450	+	612.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205053, intron 1 of 3)	intron (NM_001205053, intron 1 of 3)	5332.0	NM_001205053	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128767682-2	chr2	128767580	128767780	+	615.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 8 of 18)	B1F1|SINE|Alu	-50623.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	1.31730656450504	1.95609779360678	0.966004306988662	0.721753706309758	0.702570639705105	1.77522819149244	1.46785196072707	0.724081581800101	-0.25061238245009	0.863562891871958	0.998431161219273
Merged-chr3-146658459-4	chr3	146658346	146658546	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7129.0	NM_029144	75015.0	Mm.250432	NM_029144	ENSMUSG00000048652	4930503B20Rik	1700013A07Rik|1700095G21Rik|4930483N21Rik|Gm1652|Samd13	RIKEN cDNA 4930503B20 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46562340-2	chr19	46562240	46562440	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355233, intron 1 of 6)	B2_Mm2|SINE|B2	10842.0	NM_001355233	56350.0	Mm.22085	NM_019718	ENSMUSG00000025035	Arl3	-	ADP-ribosylation factor-like 3	protein-coding	1.9148657625964	0.850735141807248	1.21600353535852	1.32191275414704	1.5694407640094	0.853881089300584	1.05090792808451	1.45232282585352	-0.466530257195068	0.728254810276979	0.998431161219273
Merged-chr4-126197643-4	chr4	126197536	126197736	+	589.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356455, intron 1 of 11)	intron (NM_001356455, intron 1 of 11)	3371.0	NM_001356456	230753.0	Mm.29813	NM_146153	ENSMUSG00000043962	Thrap3	9330151F09Rik|B230333E16Rik|Trap150	thyroid hormone receptor associated protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-20992785-2	chr11	20992685	20992885	+	778.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-98539.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-101834422-2	chr5	101834322	101834522	+	646.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172882, exon 67 of 67)	3' UTR (NM_172882, exon 67 of 67)	69292.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84723011-4	chr8	84722924	84723124	+	874.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001297601, intron 6 of 8)	intron (NM_001297601, intron 6 of 8)	21567.0	NM_008535	17095.0	Mm.4925	NM_008535	ENSMUSG00000034041	Lyl1	Lyl-1|bHLHa18	lymphoblastomic leukemia 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-83742435-4	chr8	83742330	83742530	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1119.0	NM_001163031	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	5.22929742317017	4.46906793040357	5.23333979398037	4.52782498767548	5.26544009570756	4.67777972655207	5.2682918061998	4.59742886835031	0.087229035960963	0.80717881010251	0.998431161219273
Merged-chr10-80632618-2	chr10	80632518	80632718	+	827.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159591, intron 1 of 11)	intron (NM_001159591, intron 1 of 11)	2962.0	NM_001159591	103236.0	Mm.29873	NM_134002	ENSMUSG00000003345	Csnk1g2	2810429I12Rik|AI463719	casein kinase 1, gamma 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-9212752-2	chr18	9212652	9212852	+	782.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008058)	promoter-TSS (NM_008058)	-104.0	NM_008058	14370.0	Mm.184289	NM_008058	ENSMUSG00000036904	Fzd8	Fz8	frizzled class receptor 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132757224-4	chr4	132757112	132757312	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133888)	promoter-TSS (NM_133888)	-41.0	NM_133888	100340.0	Mm.287187	NM_133888	ENSMUSG00000028885	Smpdl3b	1110054A24Rik|AU045240|Asml3b	sphingomyelin phosphodiesterase, acid-like 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-56396323-3	chr19	56396213	56396413	+	931.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007611)	promoter-TSS (NM_007611)	-816.0	NM_007611	12369.0	Mm.35687	NM_007611	ENSMUSG00000025076	Casp7	AI314680|CMH-1|ICE-IAP3|Mch3|caspase-7|mCASP-7	caspase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-52426096-4	chr10	52425995	52426195	+	885.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030250, intron 1 of 4)	MTD|LTR|ERVL-MaLR	8548.0	NM_030250	52014.0	Mm.199964	NM_030250	ENSMUSG00000023068	Nus1	1600027K07Rik|AU019165|AW538011|BC003223|D10Ertd438e	NUS1 dehydrodolichyl diphosphate synthase subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26563793-1	chr17	26563693	26563893	+	993.0	f1_c57bl6.idr	intron (NM_026170, intron 1 of 9)	intron (NM_026170, intron 1 of 9)	2281.0	NM_026170	67458.0	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	-0.581469998864205	-0.568776525750163	0.226432995159979	-0.576130684664821	-0.580674536810218	-0.567843289718042	-0.219835294166499	-0.575569904396469	-1.52511739932556	0.585901345631978	1
Merged-chr8-122898505-5	chr8	122898360	122898560	+	890.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 7 of 12)	intron (NM_001081379, intron 7 of 12)	50086.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76344218-2	chr15	76344118	76344318	+	988.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025567, intron 1 of 6)	intron (NM_025567, intron 1 of 6)	695.0	NM_025567	66445.0	Mm.29196	NM_025567	ENSMUSG00000022551	Cyc1	2610002H19Rik|AA408921|Cyct1	cytochrome c-1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152795858-2	chr1	152795758	152795958	+	916.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4295.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-48894416-3	chr7	48894357	48894557	+	738.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12861.0	NM_001360812	108961.0	Mm.240566	NM_001013368	ENSMUSG00000046179	E2f8	4432406C08Rik|AA410048	E2F transcription factor 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127551788-2	chr10	127551688	127551888	+	663.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 62 of 88)	intron (NM_008512, intron 62 of 88)	-17229.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-39580961-4	chr1	39580887	39581087	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	AT_rich|Low_complexity|Low_complexity	-3640.0	NM_001033135	67702.0	Mm.28614	NM_001033135	ENSMUSG00000048234	Rnf149	1600023E10Rik|AV037261|C76763|Gm15832|Greul4	ring finger protein 149	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-115375083-4	chr6	115374986	115375186	+	805.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001308354, intron 1 of 7)	L3|LINE|CR1	12737.0	NM_001308354	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-121721522-3	chr5	121721416	121721616	+	847.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009125, intron 1 of 24)	ID4|SINE|ID	9907.0	NM_009125	20239.0	Mm.260900	NM_009125	ENSMUSG00000042605	Atxn2	9630045M23Rik|ATX2|AW544490|Sca2	ataxin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-121259897-4	chr11	121259772	121259972	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080932)	promoter-TSS (NM_001080932)	-115.0	NM_001080932	68837.0	Mm.209750	NM_001080932	ENSMUSG00000039275	Foxk2	1110054H05Rik|5730434B08Rik|6230415M23Rik|ILF|Ilf1	forkhead box K2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-53540023-4	chr5	53539904	53540104	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15775.0	NM_001080928	19664.0	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	2.60681143088646	2.41521051544539	2.32625891742249	1.66336150807219	1.80016639209557	2.8562467243632	3.86987025747159	3.51289007962302	1.6804376740746	0.0365912694115511	0.271448093816853
Merged-chr11-115084189-2	chr11	115084089	115084289	+	558.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7242.0	NM_001163753	58222.0	Mm.143789	NM_021411	ENSMUSG00000020732	Rab37	B230331O03Rik|B230354I04Rik	RAB37, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-106496149-4	chr3	106496047	106496247	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001093754, intron 8 of 11)	intron (NM_001093754, intron 8 of 11)	10107.0	NM_028110	72121.0	Mm.14816	NM_028110	ENSMUSG00000027901	Dennd2d	2010308M01Rik|AI451421	DENN/MADD domain containing 2D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-32189833-1	chr4	32189733	32189933	+	578.0	f0_balb.idr	Intergenic	Intergenic	225726.0	NM_172688	26409.0	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-25986431-4	chr15	25986275	25986475	+	816.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144523, intron 1 of 5)	MLT1A1|LTR|ERVL-MaLR	2009.0	NM_144523	52521.0	Mm.29145	NM_144523	ENSMUSG00000052253	Zfp622	1110033B05Rik|D15Ertd806e|ZPR9|Znf622	zinc finger protein 622	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-102922708-4	chr14	102922620	102922820	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	59912.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-107810231-4	chr13	107810132	107810332	+	927.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 2 of 14)	L1MD3|LINE|L1	79832.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-104124889-2	chr12	104124789	104124989	+	630.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3107.0	NM_173024	271047.0	Mm.120265	NM_173024	ENSMUSG00000066364	Serpina3b	6A1|A030003A19Rik	serine (or cysteine) peptidase inhibitor, clade A, member 3B	protein-coding	0.809421805105358	1.10548584827388	0.277632675578002	0.270298370061829	0.259790430635475	0.28911971041444	0.279714544340091	1.27208375103652	-0.218224806284181	0.912013669275834	1
Merged-chr8-3288675-4	chr8	3288528	3288728	+	894.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx10|LINE|L1	-9011.0	NM_001330056	16337.0	Mm.268003	NM_010568	ENSMUSG00000005534	Insr	4932439J01Rik|CD220|D630014A15Rik|IR|IR-A|IR-B	insulin receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-72791558-2	chr5	72791458	72791658	+	736.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013689, intron 3 of 17)	RLTR22_Mur|LTR|ERVK	-38781.0	NM_001122754	22165.0	Mm.3264	NM_013698	ENSMUSG00000054892	Txk	A130089B16Rik|Btkl|PTK-RL-18|PTK4|Rlk	TXK tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-16468388-4	chr5	16468295	16468495	+	918.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-85100.0	NM_001289460	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81044606-4	chr15	81044449	81044649	+	895.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001082536, intron 3 of 13)	intron (NM_001082536, intron 3 of 13)	60498.0	NM_153049	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127289371-4	chr10	127289270	127289470	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033072)	promoter-TSS (NM_033072)	-352.0	NM_033072	110962.0	Mm.372826	NM_033072	ENSMUSG00000025409	Mbd6	D10Wsu93e	methyl-CpG binding domain protein 6	protein-coding	4.49509085978061	4.55554789848807	3.85639973839129	5.0715309926373	4.75149475490208	5.41383609935196	4.99211751842357	4.61122909338982	0.495999288540477	0.195177354484135	0.675891254310368
Merged-chr17-74265134-2	chr17	74265039	74265239	+	763.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133771, intron 1 of 8)	intron (NM_133771, intron 1 of 8)	29724.0	NM_133771	76890.0	Mm.311874	NM_133771	ENSMUSG00000058704	Memo1	0610016J10Rik|D930048L02Rik	mediator of cell motility 1	protein-coding	0.91328037369409	0.621700937265928	0.825742656460136	1.84652063762426	1.17253299315556	0.624645079477051	1.42004496177784	0.599917091749959	-0.593409108756688	0.699926745833556	0.998431161219273
Merged-chr5-99632971-4	chr5	99632874	99633074	+	939.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 1 of 3)	intron (NR_030692, intron 1 of 3)	96086.0	NR_030692	319818.0	Mm.295233	NR_030692	ENSMUSG00000089809	A930011G23Rik	-	RIKEN cDNA A930011G23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-66377374-2	chr9	66377274	66377474	+	658.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145617, intron 3 of 77)	Lx2|LINE|L1	26924.0	NM_145617	235439.0	Mm.244179	NM_145617	ENSMUSG00000038664	Herc1	2810449H11Rik|B230218H07|D130015N03Rik|tbl	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-56468048-2	chr18	56467935	56468135	+	608.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026240, intron 1 of 13)	intron (NM_026240, intron 1 of 13)	35903.0	NM_026240	107022.0	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|Gramd2b|NS3TP2	GRAM domain containing 3	protein-coding	0.592422337624832	0.827832922853097	0.519693911463116	0.855927156905315	0.705011246339191	0.546341954335791	0.352859176190816	0.347526244145107	-1.40777741578235	0.408127726346008	1
Merged-chr16-56717527-4	chr16	56717422	56717622	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252443)	promoter-TSS (NM_001252443)	-72.0	NM_001357126	21787.0	Mm.425970	NM_019678	ENSMUSG00000022757	Tfg	AI173908	Trk-fused gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96218308-2	chr3	96218208	96218408	+	571.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1608.0	NM_178213	621893.0		NM_178213	ENSMUSG00000063689	Hist2h2ab	EG621893|H2a-613a	histone cluster 2, H2ab	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44281147-4	chr7	44281032	44281232	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	-7974.0	NM_001361137	102632142.0		NM_001361137		Gm18905	-	predicted gene, 18905	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-74363688-4	chr1	74363525	74363725	+	882.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033345, intron 4 of 9)	intron (NM_001033345, intron 4 of 9)	1517.0	NM_001033345	241112.0	Mm.310460	NM_001033345	ENSMUSG00000073650	Catip	Gm216	ciliogenesis associated TTC17 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-89385868-4	chr13	89385782	89385982	+	851.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-154754.0	NM_013500	12950.0	Mm.266790	NM_013500	ENSMUSG00000021613	Hapln1	BB099155|CLP|Crtl1|Crtl1l|LP|LP-1	hyaluronan and proteoglycan link protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-79063782-2	chr13	79063682	79063882	+	706.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-864909.0	NM_010151	13865.0	Mm.439653	NM_010151	ENSMUSG00000069171	Nr2f1	COUP-TF1|COUP-TFI|COUPTFA|EAR-3|EAR3|Erbal3|SVP44|Tcfcoup1	nuclear receptor subfamily 2, group F, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-101030772-1	chr3	101030672	101030872	+	798.25	f0_balb.idr	Intergenic	Intergenic	-1277.0	NM_001167906	630146.0	Mm.190915	NM_001099332	ENSMUSG00000086564	Cd101	EWI-101|Gm1016|Gm734|Igsf2	CD101 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88335907-1	chr3	88335807	88336007	+	890.6666869999999	f0_balb.idr	promoter-TSS (NM_178246)	promoter-TSS (NM_178246)	-353.0	NM_178246	229512.0	Mm.439830	NM_173188	ENSMUSG00000001415	Smg5	BC024683|mKIAA1089	Smg-5 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-90232757-2	chr11	90232657	90232857	+	878.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16719.0	NM_026178	67468.0	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-168578225-3	chr2	168578135	168578335	+	869.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291169, intron 1 of 10)	intron (NM_001291169, intron 1 of 10)	12130.0	NM_001291178	18019.0	Mm.116802	NM_010899	ENSMUSG00000027544	Nfatc2	AI607462|NF-ATc2|NF-ATp|NFAT1|NFAT1-D|Nfatp	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19845294-4	chr7	19845206	19845406	+	995.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6697.0	NM_001270489	100502736.0	Mm.445354	NM_001270489	ENSMUSG00000092216	Gm19345	-	predicted gene, 19345	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-125270799-3	chr5	125270694	125270894	+	831.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	70300.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-46535361-4	chr18	46535245	46535445	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9374.0	NM_173423	240263.0	Mm.38249	NM_173423	ENSMUSG00000033319	Fem1c	2610312A07Rik|3632443A22Rik|AI646567	fem-1 homolog c (C.elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56999835-2	chr17	56999735	56999935	+	879.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_025538)	TTS (NM_025538)	270.0	NM_008954	19197.0	Mm.86487	NM_008954	ENSMUSG00000002664	Pspn	PSP	persephin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-6336311-3	chr2	6336235	6336435	+	784.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080548, intron 1 of 14)	intron (NM_001080548, intron 1 of 14)	13578.0	NM_001080548	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-31855167-3	chr17	31855059	31855259	+	871.0	f0_balb.idr|f0_c57.idr|f1_balb.idr	intron (NM_010831, intron 1 of 13)	CpG-6228	645.0	NM_010831	17691.0	Mm.290941	NM_010831	ENSMUSG00000024042	Sik1	Hrt-20|Msk|Sik|Sik-1|Snf1lk	salt inducible kinase 1	protein-coding	-0.720377538545582	-0.842031131727246	-0.846596898997973	-0.84854521835795	-0.49716008515589	-0.839489337358303	-0.678400562324647	-0.694199622525776	1.92934080602886	0.47131393131833	1
Merged-chr3-96152081-3	chr3	96151977	96152177	+	808.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025613, intron 10 of 12)	intron (NM_001025613, intron 10 of 12)	-9893.0	NM_181409	194126.0	Mm.268536	NM_181409	ENSMUSG00000045934	Mtmr11	AI035306|BC051083|Cra	myotubularin related protein 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-80949677-1	chr13	80949577	80949777	+	1000.0	f0_balb.idr	Intergenic	Intergenic	9274.0	NR_103550	71416.0	Mm.415500	NR_103550		5430425K12Rik	-	RIKEN cDNA 5430425K12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-13872720-2	chr6	13872620	13872820	+	632.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045995, intron 1 of 2)	intron (NR_045995, intron 1 of 2)	1151.0	NR_045995	76311.0	Mm.367129	NR_045995	ENSMUSG00000097616	1110019D14Rik	-	RIKEN cDNA 1110019D14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-88866029-3	chr18	88865925	88866125	+	874.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28182.0	NM_018821	54607.0	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-85591292-2	chr1	85591204	85591404	+	897.5	f0_balb.idr|f1_balb.idr	intron (NM_030194, intron 4 of 11)	intron (NM_030194, intron 4 of 11)	7506.0	NM_030194	109032.0	Mm.335802	NM_030194	ENSMUSG00000070034	Sp110	5031415C07Rik|52kDa|5830484A20Rik|Ifi75|Ipr1	Sp110 nuclear body protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-106445594-1	chr9	106445494	106445694	+	683.0	f1_c57bl6.idr	5' UTR (NM_001110271, exon 2 of 6)	5' UTR (NM_001110271, exon 2 of 6)	2084.0	NM_001359225	68644.0	Mm.268925	NM_145919	ENSMUSG00000042210	Abhd14a	1110013B16Rik|AW558221|Dorz1	abhydrolase domain containing 14A	protein-coding	0.635582585272308	0.409652988095381	1.01980946434829	0.793464387826811	0.393349920302127	0.410954017136935	0.40517311874667	1.06267465849385	-0.727720351020987	0.695364507107184	1
Merged-chr3-69560145-4	chr3	69560061	69560261	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38799.0	NM_020026	26879.0	Mm.153710	NM_020026	ENSMUSG00000043300	B3galnt1	B3galt3|b3GT3	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-40521994-2	chr12	40521894	40522094	+	714.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	75941.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-131812964-2	chr7	131812864	131813064	+	824.974976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-153496.0	NM_173410	233919.0	Mm.208740	NM_173410	ENSMUSG00000040125	Gpr26	9630036A11Rik|A730021D22	G protein-coupled receptor 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-7681573-4	chr10	7681470	7681670	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033219)	promoter-TSS (NR_033219)	361.0	NM_010690	16798.0	Mm.34083	NM_010690	ENSMUSG00000040021	Lats1	AW208599	large tumor suppressor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-21279731-3	chr13	21279611	21279811	+	858.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	tRNA-Arg-CGA|tRNA|tRNA	12975.0	NM_010343	14780.0	Mm.1332	NM_010343	ENSMUSG00000004344	Gpx5	AV379049|Arep	glutathione peroxidase 5	protein-coding	1.64576149055717	2.76587573680742	0.986848261488898	0.964888197711565	2.26336345539252	1.02042151067606	1.25997735549703	2.53891390935337	0.198112746062323	0.876204511895776	0.998431161219273
Merged-chr11-3167564-4	chr11	3167502	3167702	+	950.05835	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030207, intron 7 of 32)	RLTR21|LTR|ERVK	25861.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-60741699-3	chr10	60741599	60741799	+	796.138916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023596, intron 2 of 5)	intron (NM_023596, intron 2 of 5)	11083.0	NM_023596	71279.0	Mm.284462	NM_023596	ENSMUSG00000020100	Slc29a3	4933435C21Rik|AW987637|Ent3	solute carrier family 29 (nucleoside transporters), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-44778948-4	chr16	44778844	44779044	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021325, intron 1 of 6)	intron (NM_021325, intron 1 of 6)	13208.0	NM_021325	57781.0	Mm.416152	NM_021325	ENSMUSG00000022667	Cd200r1	CD200R|Mox2r|OX2R	CD200 receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-22722010-4	chr2	22721908	22722108	+	921.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52319.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-136238170-2	chr4	136238070	136238270	+	590.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001008232, intron 12 of 24)	intron (NM_001008232, intron 12 of 24)	-9787.0	NM_011542	21401.0	Mm.112	NM_011542	ENSMUSG00000001604	Tcea3	S-II|SII-K1	transcription elongation factor A (SII), 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-75670552-2	chr12	75670452	75670652	+	999.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14-int|LTR|ERV1	-1015.0	NM_028203	72338.0	Mm.341719	NM_028203	ENSMUSG00000045690	Wdr89	2600001A11Rik	WD repeat domain 89	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96596499-2	chr3	96596399	96596599	+	936.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024851)	promoter-TSS (NM_001024851)	-137.0	NM_001024851	545554.0	Mm.267664	NM_001024851	ENSMUSG00000049097	Ankrd34a	AW060394|Ankrd34	ankyrin repeat domain 34A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-34515264-2	chr19	34515164	34515364	+	925.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111100, intron 3 of 9)	intron (NM_001111100, intron 3 of 9)	12210.0	NM_001111100	16889.0	Mm.157545	NM_021460	ENSMUSG00000024781	Lipa	AA960673|Lal|Lip-1|Lip1	lysosomal acid lipase A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-135634656-2	chr1	135634556	135634756	+	797.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36880.0	NR_151586	215714.0	Mm.472859	NM_175447		Gm4793	EG215714	predicted gene 4793	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-131160599-2	chr3	131160499	131160699	+	749.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001276403, intron 3 of 11)	intron (NM_001276403, intron 3 of 11)	47808.0	NM_001276403	16842.0	Mm.255219	NM_010703	ENSMUSG00000027985	Lef1	3000002B05|AI451430|Lef-1	lymphoid enhancer binding factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-92858694-3	chr8	92858593	92858793	+	785.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357375, intron 1 of 12)	intron (NM_001357375, intron 1 of 12)	3360.0	NM_001357374	270084.0	Mm.21463	NM_173014	ENSMUSG00000033192	Lpcat2	1-AGPAT 11|A330042H22|Aytl1|Aytl1a|lpafat1|lysoPAFAT|lysoPAFAT/LPCAT2	lysophosphatidylcholine acyltransferase 2	protein-coding	1.78928052713399	3.13166051250802	1.42586921511243	2.29248292642365	3.64632364379251	4.24941068344991	2.20926477323227	3.42937113189648	2.11288818971808	0.00801997858353583	0.0931798286429272
Merged-chr6-52471764-4	chr6	52471645	52471845	+	968.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20706.0	NR_046049	74304.0	Mm.490579	NR_046049	ENSMUSG00000107895	1700094M24Rik	-	RIKEN cDNA 1700094M24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126751623-3	chr8	126751536	126751736	+	830.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-97384.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-51498517-4	chr10	51498411	51498611	+	912.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	7613.0	NM_013532	14728.0	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-55820415-3	chr12	55820296	55820496	+	893.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003719, intron 1 of 39)	intron (NM_001003719, intron 1 of 39)	1120.0	NM_019994	56784.0	Mm.292180	NM_019994	ENSMUSG00000021027	Ralgapa1	2310003F20Rik|4930400K19Rik|AI563624|GRIPE|Garnl1|Tulip1|mKIAA0884	Ral GTPase activating protein, alpha subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-51733750-5	chr15	51733630	51733830	+	839.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	131731.0	NM_080635	68135.0	Mm.289800	NM_080635	ENSMUSG00000022312	Eif3h	1110008A16Rik|40kD|9430017H16Rik|EIF3-P40|EIF3-gamma|Eif3s3	eukaryotic translation initiation factor 3, subunit H	protein-coding	-2.18138529563533	-2.15523716995652	-2.1631445789866	-2.16963996020037	-2.05513010215571	-2.15352360143315	-2.16135451490766	-2.16847729006863	0.759018020146679	0.829933115115583	1
Merged-chr14-20737443-4	chr14	20737345	20737545	+	881.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001039138, exon 19 of 20)	exon (NM_001039138, exon 19 of 20)	-2883.0	NM_010811	17423.0	Mm.4084	NM_010811	ENSMUSG00000039308	Ndst2	Mndns|NDST-2	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2	protein-coding	3.03558636238407	4.4372370071083	3.84245859566755	2.7695678033348	2.63256937306962	4.11981348522117	3.7408646324362	1.57879603920019	-0.502961939442676	0.497333993194018	0.936897994490085
Merged-chr3-90085560-4	chr3	90085537	90085737	+	949.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357581, intron 1 of 8)	intron (NM_001357581, intron 1 of 8)	6116.0	NM_001293749	59069.0	Mm.240839	NM_022314	ENSMUSG00000027940	Tpm3	TM30nm|TMnm|Tm5NM|Tpm-5|Tpm5|Trop-5|gamma-TM|hTM30nm|hTMnm	tropomyosin 3, gamma	protein-coding	2.05911375496142	2.57438439772303	1.69031160891606	2.41740222526619	2.74614888580228	3.14714211827867	2.0927806038794	2.42986808561171	0.945229207366491	0.252291501581219	0.749998373630194
Merged-chr7-34166981-4	chr7	34166863	34167063	+	664.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016682, intron 1 of 16)	RSINE1|SINE|B4	1566.0	NM_016682	50995.0	Mm.27560	NM_016682	ENSMUSG00000052997	Uba2	AA986091|Arx|Sae2|UBA1|Ubl1a2|Uble1b	ubiquitin-like modifier activating enzyme 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-85114881-3	chr16	85114780	85114980	+	951.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198825, intron 2 of 15)	intron (NM_001198825, intron 2 of 15)	58827.0	NM_001198825	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-21032735-3	chr19	21032586	21032786	+	703.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72024.0	NR_126458	75354.0	Mm.243873	NR_126458		4930554I06Rik	-	RIKEN cDNA 4930554I06 gene	ncRNA	2.08430568092082	1.76741755298226	2.35154944598813	1.66264619211162	1.71823499077225	1.40872621280478	1.98527604566558	1.12058000452038	-1.16454212585007	0.277314072137252	0.781366007374687
Merged-chr12-116086097-2	chr12	116085997	116086197	+	603.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009511, intron 2 of 12)	intron (NM_009511, intron 2 of 12)	8371.0	NM_009511	22355.0	Mm.395245	NM_009511	ENSMUSG00000011171	Vipr2	VPAC2|VPAC2R|Vip2	vasoactive intestinal peptide receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-100958625-2	chr10	100958527	100958727	+	961.416626	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR10D2|LTR|ERVK	-216992.0	NR_152765	102639396.0	Mm.404529	NR_152765		Gm35722	-	predicted gene, 35722	ncRNA	0.186249523393203	0.699613942591913	0.527048805262685	0.194399942811589	0.187463229079886	0.404875883069723	0.883991229790525	0.363009109627378	0.447138586528456	0.812142188123397	1
Merged-chr18-36376414-2	chr18	36376314	36376514	+	802.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081365, intron 2 of 2)	intron (NM_001081365, intron 2 of 2)	27790.0	NM_001081365	66060.0	Mm.272527	NM_001081365	ENSMUSG00000046727	Cystm1	0610010O12Rik	cysteine-rich transmembrane module containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-116818915-3	chr6	116818814	116819014	+	807.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-102156.0	NM_178768	319776.0	Mm.133120	NM_178768	ENSMUSG00000048108	Tmem72	C230095G01Rik	transmembrane protein 72	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-72325593-3	chr8	72325429	72325629	+	830.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6467.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	1.99072305019442	1.68758612437638	2.04839123054337	1.42714357974089	1.80120366730585	1.86424999862529	2.27042827435094	2.00212215250781	0.524145674301139	0.590581474643846	0.969417621229962
Merged-chr10-17431219-3	chr10	17431132	17431332	+	763.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-291996.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	-1.13146769101922	-1.10460487238646	-1.11735372523027	-1.12713099301154	-1.13082009585647	-0.300663969208598	-1.11446766439333	-1.12595147812057	3.06518455575839	0.353555291099784	1
Merged-chr9-30448630-4	chr9	30448543	30448743	+	889.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028874, intron 8 of 10)	intron (NM_028874, intron 8 of 10)	21314.0	NM_028874	102607.0	Mm.35084	NM_028874	ENSMUSG00000031993	Snx19	3526401K03Rik|AI195321|AI848208|mKIAA0254	sorting nexin 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-127246274-2	chr2	127246174	127246374	+	804.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_025296, intron 4 of 6)	intron (NM_025296, intron 4 of 6)	1542.0	NM_025296	26371.0	Mm.45179	NM_025296	ENSMUSG00000003662	Ciao1	AW210570|Wdr39	cytosolic iron-sulfur protein assembly 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124075736-3	chr5	124075642	124075842	+	758.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019875, intron 9 of 11)	intron (NM_019875, intron 9 of 11)	20056.0	NM_019875	56325.0	Mm.254839	NM_019875	ENSMUSG00000029408	Abcb9	TAPL|mKIAA1520	ATP-binding cassette, sub-family B (MDR/TAP), member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4877367-4	chr16	4877277	4877477	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145359, intron 1 of 2)	intron (NM_145359, intron 1 of 2)	2474.0	NM_145359	207740.0	Mm.268895	NM_145359	ENSMUSG00000039568	Ubald1	1500031H01Rik|BC013706|Fam100a	UBA-like domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-67698668-4	chr18	67698582	67698782	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008977, intron 2 of 9)	intron (NM_008977, intron 2 of 9)	25939.0	NM_001127177	19255.0	Mm.260433	NM_008977	ENSMUSG00000024539	Ptpn2	AI325124|Ptpt|TC-PTP	protein tyrosine phosphatase, non-receptor type 2	protein-coding	0.551421968055593	0.596090079838872	1.7844632874606	0.570591763911154	1.61975185897531	1.21657956232805	1.00399132579066	0.572571522326771	0.494007660707485	0.762786844525722	0.998431161219273
Merged-chr12-111671684-4	chr12	111671618	111671818	+	988.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021273, intron 2 of 7)	CpG-3541	620.0	NM_021273	12709.0	Mm.16831	NM_021273	ENSMUSG00000001270	Ckb	B-CK|Bck|CPK-B|Ck-3|Ck3|Ckbb	creatine kinase, brain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-34082742-4	chr13	34082669	34082869	+	978.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-4761.0	NM_009450	22151.0	Mm.422827	NM_009450	ENSMUSG00000058672	Tubb2a	M(beta)2|Tubb2	tubulin, beta 2A class IIA	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55938856-2	chr19	55938756	55938956	+	626.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43535.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-76399134-4	chr11	76399046	76399246	+	996.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008750)	promoter-TSS (NM_008750)	-5.0	NM_008750	18230.0	Mm.27915	NM_008750	ENSMUSG00000020844	Nxn	l11Jus13	nucleoredoxin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-36091006-1	chr8	36090906	36091106	+	682.5	f1_c57bl6.idr	Intergenic	Intergenic	-3822.0	NM_172911	244418.0	Mm.244971	NM_172911	ENSMUSG00000050271	Prag1	9830148H23|D8Ertd82e|NACK|Sgk223|mFLJ00269	PEAK1 related kinase activating pseudokinase 1	protein-coding	-0.854545545352211	-0.842053029889108	-0.659830544137943	-0.100123911141473	-0.853897209844834	-0.839141302149965	-0.846824521879509	-0.849733354820258	-3.18506009758606	0.277371088425537	1
Merged-chr9-111501863-2	chr9	111501749	111501949	+	735.375	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	62768.0	NM_172928	245038.0	Mm.26361	NM_172928	ENSMUSG00000032500	Dclk3	BC056929|C730036H08|Dcamkl3	doublecortin-like kinase 3	protein-coding	1.3863131053386	1.26737885884977	2.23494354395921	1.19614030125856	3.21111518857495	2.47229683267851	2.60449683418928	2.85492683100461	2.91703567369033	0.00286590364771153	0.0440458308692267
Merged-chr2-30134629-4	chr2	30134536	30134736	+	884.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146252, intron 1 of 11)	intron (NM_146252, intron 1 of 11)	890.0	NM_146252	70296.0	Mm.19172	NM_146252	ENSMUSG00000039678	Tbc1d13	2600014A06Rik|BC025586	TBC1 domain family, member 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44955857-2	chr7	44955757	44955957	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077591, intron 8 of 10)	B2_Mm2|SINE|B2	12617.0	NM_011651	22116.0	Mm.84502	NM_011651	ENSMUSG00000059891	Tsks	Stk22s1|Tssks1	testis-specific serine kinase substrate	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-147671968-1	chr3	147671868	147672068	+	821.0	f1_c57bl6.idr	Intergenic	RMER21B|LTR|ERV1	819601.0	NM_001302957	70892.0	Mm.187793	NM_027594	ENSMUSG00000036745	Ttll7	1110049N09Rik|4921517B04Rik|C630030B20|mTTLL7	tubulin tyrosine ligase-like family, member 7	protein-coding	-1.36015291771705	-1.32842431658676	-1.33874579108173	-1.34722415754512	-1.35969949349639	-1.32618761000664	-1.33640923549635	-0.791042329471244	2.42373733289067	0.484013421080845	1
Merged-chr14-76505526-1	chr14	76505426	76505626	+	587.0	f0_balb.idr	intron (NM_001310647, intron 2 of 2)	intron (NM_001310647, intron 2 of 2)	1016.0	NM_009366	21807.0	Mm.153272	NM_009366	ENSMUSG00000022010	Tsc22d1	AA589566|AW105905|Egr5|TSC-22|Tgfb1i4|Tsc|Tsc22	TSC22 domain family, member 1	protein-coding	1.75836498560338	1.96095501692781	2.85843180525682	1.84692310702359	1.90281945945334	2.2622120083484	1.9118269148029	1.99606636261671	-0.446617391484383	0.627957673246016	0.980912176761026
Merged-chr8-105161377-1	chr8	105161277	105161477	+	637.0	f0_balb.idr	Intergenic	URR1B|DNA|hAT-Charlie	-9297.0	NM_001161457	12400.0	Mm.2018	NM_022309	ENSMUSG00000031885	Cbfb	AI893578|PEA2|PEBP2b|Pebp2|Pebpb2	core binding factor beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-61698907-3	chr14	61698817	61699017	+	894.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16544.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	2.42518866533545	3.19091373339679	3.08496836824666	2.25912563825751	3.42163569638034	2.59867397204056	3.36154494016448	3.33367756358211	0.755277534001433	0.258736451483223	0.759126168461617
Merged-chr19-10864527-2	chr19	10864427	10864627	+	734.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133804, intron 4 of 10)	intron (NM_133804, intron 4 of 10)	5252.0	NM_133804	98170.0	Mm.490254	NM_133804	ENSMUSG00000024736	Tmem132a	6720481D13Rik|Hspa5bp1|Orai1|R74613	transmembrane protein 132A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-57897561-2	chr16	57897461	57897661	+	600.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-142824.0	NM_007739	12837.0	Mm.130388	NM_007739	ENSMUSG00000068196	Col8a1	Col8a-1	collagen, type VIII, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-165724395-4	chr1	165724276	165724476	+	880.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-16282.0	NM_178593	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124919867-4	chr6	124919751	124919951	+	879.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152158, intron 1 of 1)	intron (NR_152158, intron 1 of 1)	-1905.0	NM_026988	69202.0	Mm.142187	NM_026988	ENSMUSG00000030122	Ptms	2610009E16Rik	parathymosin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-102021622-2	chr7	102021522	102021722	+	756.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029211, intron 8 of 8)	intron (NM_029211, intron 8 of 8)	-3467.0	NM_010531	16068.0	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-145234057-4	chr4	145233992	145234192	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011610, intron 1 of 9)	intron (NM_011610, intron 1 of 9)	12778.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-127587277-4	chr2	127587206	127587406	+	983.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029963)	promoter-TSS (NM_029963)	-120.0	NM_029963	77721.0	Mm.274601	NM_029963	ENSMUSG00000027374	Mrps5	1620401I16Rik|AI850294	mitochondrial ribosomal protein S5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-27361591-4	chr7	27361481	27361681	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_032610, exon 33 of 36)	exon (NM_032610, exon 33 of 36)	-5573.0	NM_138676	192192.0	Mm.21297	NM_138676	ENSMUSG00000089832	Shkbp1	B930062H15Rik|Sb1	Sh3kbp1 binding protein 1	protein-coding	5.37666080931561	4.3287913004402	6.09958585410924	5.68581783623216	5.3428974874263	5.26035339692288	6.33790940346462	5.10531210182209	0.103297438532523	0.783403661659804	0.998431161219273
Merged-chr9-119983835-4	chr9	119983718	119983918	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357560)	promoter-TSS (NM_001357560)	-39.0	NM_001357562	215418.0	Mm.491094	NM_153287	ENSMUSG00000032515	Csrnp1	4931429D10Rik|Axud1|CSRNP-1|URAX1|taip-3	cysteine-serine-rich nuclear protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-73585415-3	chr12	73585267	73585467	+	750.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008856, exon 1 of 14)	exon (NM_008856, exon 1 of 14)	571.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-58449356-2	chr10	58449256	58449456	+	859.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011240, intron 1 of 28)	B2_Mm2|SINE|B2	2504.0	NM_011240	19386.0	Mm.431695	NM_011240	ENSMUSG00000003226	Ranbp2	A430087B05Rik|AI256741|NUP358	RAN binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-78298807-2	chr10	78298707	78298907	+	697.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_053014, intron 2 of 9)	intron (NM_053014, intron 2 of 9)	41400.0	NR_106119	102465765.0		NR_106119	ENSMUSG00000098885	Mir7659	Gm27433|mmu-mir-7659	microRNA 7659	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-52418733-4	chr10	52418658	52418858	+	952.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030250, intron 1 of 4)	intron (NM_030250, intron 1 of 4)	1211.0	NM_030250	52014.0	Mm.199964	NM_030250	ENSMUSG00000023068	Nus1	1600027K07Rik|AU019165|AW538011|BC003223|D10Ertd438e	NUS1 dehydrodolichyl diphosphate synthase subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-32476550-2	chr9	32476450	32476650	+	631.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_008026, intron 2 of 8)	intron (NM_008026, intron 2 of 8)	64902.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-71270804-4	chr6	71270697	71270897	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001354706)	promoter-TSS (NM_001354706)	-874.0	NR_106192	102465900.0		NR_106192	ENSMUSG00000098623	Mir8112	Gm27739|mmu-mir-8112	microRNA 8112	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-26785718-2	chr10	26785618	26785818	+	815.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_176837, intron 1 of 14)	intron (NM_176837, intron 1 of 14)	13206.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-132606359-3	chr2	132606279	132606479	+	800.200012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033469, intron 2 of 3)	intron (NR_033469, intron 2 of 3)	8183.0	NR_033469	767814.0	Mm.371752	NR_033468	ENSMUSG00000074783	AU019990	-	expressed sequence AU019990	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-58560416-4	chr9	58560310	58560510	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19470.0	NM_133983	102657.0	Mm.5356	NM_133983	ENSMUSG00000035914	Cd276	6030411F23Rik|AU016588|B7RP-2|B7h3	CD276 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-85287491-1	chr1	85287391	85287591	+	881.6666869999999	f1_balb.idr	Intergenic	Intergenic	-16925.0	NM_001037909	620078.0	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik	RIKEN cDNA C130026I21 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-69022958-2	chr8	69022899	69023099	+	796.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR11A|LTR|ERVK	-65737.0	NM_007509	11966.0	Mm.249096	NM_007509	ENSMUSG00000006273	Atp6v1b2	AI194269|AI790362|Atp6b2|HO57|R74844	ATPase, H+ transporting, lysosomal V1 subunit B2	protein-coding	-0.734697168562934	-1.28094420828655	-1.29131886204401	-1.29984091153697	-1.31008363841169	-1.2786959775384	-1.28897026783925	-1.29831546875223	-2.42902550944018	0.482518537989684	1
Merged-chr16-30641192-2	chr16	30641092	30641292	+	566.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41469.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	-0.705227906954334	-0.694617995685733	-0.698095494655617	-0.0622201186286493	-0.704566054407896	-0.325937378500551	-0.697328622082751	-0.700309049962851	-1.09952527353488	0.708418782035297	1
Merged-chr15-83021443-3	chr15	83021372	83021572	+	860.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271411, intron 1 of 5)	intron (NM_001271411, intron 1 of 5)	1666.0	NM_028728	74039.0	Mm.32584	NM_028728	ENSMUSG00000058099	Nfam1	4921501M20Rik|Cnaip	Nfat activating molecule with ITAM motif 1	protein-coding	0.861784296032026	1.12108083658808	0.59864628811852	1.25042060385066	0.869256052922989	0.609969621544327	1.31042295055545	0.768193642587908	-0.300710073462956	0.842070639896081	1
Merged-chr4-148760404-3	chr4	148760314	148760514	+	715.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MD3|LINE|L1	-43978.0	NM_001159344	69743.0	Mm.233879	NM_027195	ENSMUSG00000028977	Casz1	2410019P08Rik|AV096627|BC040081|Cst|D4Ertd432e	castor zinc finger 1	protein-coding	1.2793799248191	0.983498687564398	2.19394772110657	1.86110254457202	1.12307051218942	0.987856907650209	2.1298489831168	1.64451198223939	-0.331241019074984	0.790849646037764	0.998431161219273
Merged-chr5-123260117-2	chr5	123260017	123260217	+	660.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	31927.0	NM_026000	67151.0	Mm.278997	NM_026000	ENSMUSG00000029440	Psmd9	1500011J20Rik|2610202L11Rik|Bridge-1|P27	proteasome (prosome, macropain) 26S subunit, non-ATPase, 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-106150336-4	chr8	106150242	106150442	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133792)	promoter-TSS (NM_133792)	-12.0	NM_133792	192654.0	Mm.284770	NM_133792	ENSMUSG00000031903	Pla2g15	ACS|C87498|LLPL|Lpla2|Lypla3	phospholipase A2, group XV	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-128983478-4	chr4	128983390	128983590	+	949.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-9734.0	NM_016895	11637.0	Mm.29460	NM_016895	ENSMUSG00000028792	Ak2	Ak-2|D4Ertd220e	adenylate kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-13159137-4	chr8	13158996	13159196	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001317353)	promoter-TSS (NM_001317353)	-65.0	NM_001317353	16783.0	Mm.16716	NM_010684	ENSMUSG00000031447	Lamp1	CD107a|LGP-120|LGP-A|Lamp-1|P2B|Perk	lysosomal-associated membrane protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-21993373-6	chr10	21993273	21993473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161850)	promoter-TSS (NM_001161850)	-517.0	NM_001161850	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	1.80581862393747	2.0174086973579	2.28192609662369	1.43594574964439	1.93066750273828	1.71549550875873	2.39105175423007	1.7738099417496	0.169262068868191	0.8620927654334	0.998431161219273
Merged-chr18-32350931-2	chr18	32350836	32351036	+	557.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13B|LTR|ERVK	-26281.0	NM_001083334	30948.0	Mm.4383	NM_009668	ENSMUSG00000024381	Bin1	ALP-1|Amphl|BRAMP-2|SH3P9	bridging integrator 1	protein-coding	-0.478935883710193	-0.616409203395721	0.16556735299191	-0.623203400901659	-0.474878973710962	-0.615545662388444	-0.619396870285392	-0.622685999705632	-2.53116653783186	0.334316855714936	1
Merged-chr5-139300754-2	chr5	139300654	139300854	+	854.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_172723, intron 3 of 10)	intron (NM_172723, intron 3 of 10)	24710.0	NM_172723	231821.0	Mm.297819	NM_172723	ENSMUSG00000056413	Adap1	4930431P11Rik|Centa1|GC1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-121832832-2	chr5	121832732	121832932	+	612.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001306127, intron 1 of 8)	intron (NM_001306127, intron 1 of 8)	3272.0	NM_001306126	16923.0	Mm.65493	NM_008507	ENSMUSG00000042594	Sh2b3	AI429800|Lnk	SH2B adaptor protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133754418-4	chr4	133754317	133754517	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080819)	promoter-TSS (NM_001080819)	-806.0	NM_001080819	93760.0	Mm.22478	NM_001080819	ENSMUSG00000007880	Arid1a	1110030E03Rik|BAF250a|Osa1|Smarcf1	AT rich interactive domain 1A (SWI-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-55534645-4	chr4	55534538	55534738	+	822.979187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2163.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-25716851-2	chr15	25716751	25716951	+	566.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019472, intron 4 of 40)	B1_Mur1|SINE|Alu	-36355.0	NM_001353142	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-75751064-2	chr3	75750964	75751164	+	633.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-95333.0	NR_040539	69193.0	Mm.374088	NR_040539	ENSMUSG00000099370	Platr10	2410007B07Rik	pluripotency associated transcript 10	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-88655501-4	chr8	88655402	88655602	+	877.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145857, intron 2 of 12)	intron (NM_145857, intron 2 of 12)	8155.0	NM_145857	257632.0	Mm.222633	NM_145857	ENSMUSG00000055994	Nod2	ACUG|BLAU|CD|Card15|F830032C23Rik|IBD1|Nlrc2	nucleotide-binding oligomerization domain containing 2	protein-coding	1.95764017177178	1.51347426178132	2.53913172199556	1.93969009594302	1.7177679755654	1.52340677873634	2.92257226079699	1.80455670584989	0.229343127231073	0.816256109407437	0.998431161219273
Merged-chr14-9556000-4	chr14	9555848	9556048	+	770.924988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360141, intron 9 of 9)	intron (NM_001360141, intron 9 of 9)	-328147.0	NR_030680	100042415.0	Mm.235938	NR_030680	ENSMUSG00000089686	Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-101034892-1	chr9	101034792	101034992	+	1000.0	f0_c57.idr	promoter-TSS (NM_025835)	promoter-TSS (NM_025835)	-8.0	NM_025835	66904.0	Mm.335385	NM_025835	ENSMUSG00000032527	Pccb	1300012P06Rik|AI314687|R74805	propionyl Coenzyme A carboxylase, beta polypeptide	protein-coding	4.49894798825268	4.1937021280925	3.98939164259208	4.1845518137799	4.49606100669044	4.76493687969894	3.40558245864824	4.02989491527708	0.0451187916021119	0.919541847035256	0.998431161219273
Merged-chr12-80116490-3	chr12	80116384	80116584	+	872.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3471.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-145268455-2	chr4	145268355	145268555	+	943.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_009401)	TTS (NM_009401)	-21585.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-8869719-2	chr4	8869619	8869819	+	614.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR51A_Mm|LTR|ERVK?	118395.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-62784121-4	chr17	62783989	62784189	+	906.837524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010109, intron 1 of 3)	intron (NM_010109, intron 1 of 3)	97228.0	NM_207654	13640.0	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-142015756-2	chr4	142015656	142015856	+	601.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2142.0	NR_131014	78917.0	Mm.139995	NR_131014	ENSMUSG00000085761	4930455G09Rik	-	RIKEN cDNA 4930455G09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-134679630-4	chr1	134679526	134679726	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009307, intron 2 of 9)	MLT1G1|LTR|ERVL-MaLR	-29674.0	NM_001355726	20980.0	Mm.5102	NM_009307	ENSMUSG00000026452	Syt2	IP4BP|R74640|mKIAA4194|sytII	synaptotagmin II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-69888612-2	chr8	69888524	69888724	+	820.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001353930, intron 5 of 5)	intron (NM_001353930, intron 5 of 5)	-1232.0	NM_026818	68709.0	Mm.334584	NM_026818	ENSMUSG00000044006	Cilp2	1110031K21Rik|AA407300|CLIP-2	cartilage intermediate layer protein 2	protein-coding	1.47722066916042	1.21004734315625	1.02043284400482	1.14256153171524	1.62689043316101	1.36190853524404	1.02609270120428	0.841758192594456	0.158543332121955	0.904824101608505	0.998431161219273
Merged-chr12-98884092-2	chr12	98883992	98884192	+	655.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081191, intron 2 of 43)	intron (NM_001081191, intron 2 of 43)	17392.0	NM_001081191	319670.0	Mm.390484	NM_001081191	ENSMUSG00000051166	Eml5	BC027154|C130068M19Rik	echinoderm microtubule associated protein like 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-45229535-4	chr9	45229397	45229597	+	929.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198971, intron 1 of 4)	intron (NM_001198971, intron 1 of 4)	-25422.0	NM_145403	214523.0	Mm.436756	NM_145403	ENSMUSG00000032091	Tmprss4	mCAP2	transmembrane protease, serine 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-146785570-4	chr5	146785461	146785661	+	846.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011669, intron 1 of 8)	(GGA)n|Simple_repeat|Simple_repeat	9395.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	1.93517230482295	2.96350996282267	2.23835506726606	2.70706847645624	2.08714121175761	2.59338784734941	2.25530990461443	2.43297424842691	-0.376767396847174	0.641903547157962	0.982599433509505
Merged-chr7-44983292-4	chr7	44983193	44983393	+	935.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252476, intron 2 of 9)	intron (NM_001252476, intron 2 of 9)	3127.0	NM_001252476	15469.0	Mm.27545	NM_019830	ENSMUSG00000109324	Prmt1	6720434D09Rik|AW214366|Hrmt1l2|Mrmt1	protein arginine N-methyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41379830-3	chr19	41379752	41379952	+	782.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 1 of 16)	L1MC4|LINE|L1	5218.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-107826643-4	chr13	107826528	107826728	+	826.229187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 2 of 14)	intron (NM_145456, intron 2 of 14)	63436.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	1.17869879529723	2.9026818568887	1.85084730109304	0.984068761806543	1.18889487260311	2.08845088518087	2.52984010211626	1.25179046345966	-0.201194045125295	0.862107344954507	0.998431161219273
Merged-chr14-102510631-2	chr14	102510531	102510731	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	472001.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127904802-2	chr7	127904702	127904902	+	624.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_009739, exon 2 of 12)	5' UTR (NM_009739, exon 2 of 12)	729.0	NM_009739	12041.0	Mm.425495	NM_009739	ENSMUSG00000030802	Bckdk	AI327402	branched chain ketoacid dehydrogenase kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26705623-4	chr17	26705489	26705689	+	785.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10061.0	NM_029870	77128.0	Mm.275414	NM_029870	ENSMUSG00000048249	Crebrf	A930001N09Rik|LRF	CREB3 regulatory factor	protein-coding	-0.327141515524701	-0.315115593499091	-0.31906998213751	0.0856599120282881	-0.066390239343891	-0.314222271850588	0.237587886159602	-0.321580569509979	1.05337633790761	0.673346996689781	1
Merged-chr6-131243833-2	chr6	131243733	131243933	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008462, intron 3 of 7)	intron (NM_008462, intron 3 of 7)	3529.0	NM_001170851	16633.0	Mm.4783	NM_008462	ENSMUSG00000030187	Klra2	Klra30|Ly49b	killer cell lectin-like receptor, subfamily A, member 2	protein-coding	0.159108210171604	0.0404514994264024	0.201327080727527	0.0319239939232419	0.281199579580675	0.513348420669789	0.0366915019557651	0.539662792472143	2.25331712943099	0.266931349296241	1
Merged-chr16-81684904-2	chr16	81684804	81685004	+	611.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3A|LINE|L1	484207.0	NM_010954	17968.0	Mm.433941	NM_010954	ENSMUSG00000022762	Ncam2	Ncam-2|Ocam|RNCAM	neural cell adhesion molecule 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-100530385-7	chr3	100530280	100530480	+	985.253967	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41188.0	NM_001142952	74645.0	Mm.226900	NM_001142952	ENSMUSG00000044468	Fam46c	4930431B09Rik|AI449797	family with sequence similarity 46, member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-58073220-2	chr15	58073120	58073320	+	847.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_009572, intron 1 of 3)	B2_Mm2|SINE|B2	3288.0	NM_001042438	22770.0	Mm.244931	NM_009572	ENSMUSG00000022361	Zhx1	-	zinc fingers and homeoboxes 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101663656-4	chr7	101663570	101663770	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009191)	promoter-TSS (NM_009191)	-98.0	NM_009191	20480.0	Mm.3990	NM_009191	ENSMUSG00000001829	Clpb	AL118244|Skd3	ClpB caseinolytic peptidase B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-88581726-4	chr17	88581648	88581848	+	933.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028658, intron 19 of 21)	intron (NM_028658, intron 19 of 21)	-44807.0	NM_029858	77057.0	Mm.482203	NM_029858	ENSMUSG00000033855	Ston1	4921524J06Rik|C86231|Salf|Sblf	stonin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-116515288-4	chr10	116515155	116515355	+	818.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037848, intron 4 of 4)	intron (NM_001037848, intron 4 of 4)	12694.0	NM_001359253	72068.0	Mm.351553	NM_028082	ENSMUSG00000020166	Cnot2	2600016M12Rik|2810470K03Rik|AA537049|AA959607|AW557563|C79650	CCR4-NOT transcription complex, subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-69861059-2	chr14	69860959	69861159	+	621.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_028560, intron 3 of 6)	intron (NM_028560, intron 3 of 6)	20652.0	NM_028526	73523.0	Mm.23509	NM_028526	ENSMUSG00000022085	Pebp4	PEBP-4	phosphatidylethanolamine binding protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-56451822-4	chr18	56451713	56451913	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026240, intron 1 of 13)	intron (NM_026240, intron 1 of 13)	19681.0	NM_026240	107022.0	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|Gramd2b|NS3TP2	GRAM domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-47081445-4	chr7	47081327	47081527	+	951.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163565, intron 11 of 13)	intron (NM_001163565, intron 11 of 13)	1797.0	NR_106023	102465639.0		NR_106023	ENSMUSG00000098960	Mir7056	Gm27696|mmu-mir-7056	microRNA 7056	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-80144345-1	chr11	80144245	80144445	+	669.0	f0_balb.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	-2192.0	NM_183275	68550.0	Mm.18466	NM_183275	ENSMUSG00000046909	Tefm	1110002N22Rik	transcription elongation factor, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-36041140-4	chr16	36041024	36041224	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027113)	promoter-TSS (NM_027113)	-66.0	NM_027113	69544.0	Mm.37802	NM_027113	ENSMUSG00000034379	Wdr5b	2310009C03Rik|AI606931	WD repeat domain 5B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-93419285-2	chr2	93419185	93419385	+	655.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001136055, exon 10 of 10)	3' UTR (NM_001136055, exon 10 of 10)	2722.0	NR_105967	102465605.0		NR_105967	ENSMUSG00000099238	Mir7001	Gm27886|mmu-mir-7001	microRNA 7001	ncRNA	-1.56355737717652	-1.81244775989375	-1.82128546162293	-1.82854501295842	-1.83962066705452	-1.81053259306168	-1.81928479966835	-1.82724555674025	-1.28500227969968	0.715751224811686	1
Merged-chr12-51811916-4	chr12	51811812	51812012	+	766.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144788, intron 2 of 42)	intron (NM_144788, intron 2 of 42)	17624.0	NM_144788	207304.0	Mm.249391	NM_144788	ENSMUSG00000035247	Hectd1	A630086P08Rik|AI844876|b2b327Clo|opm	HECT domain E3 ubiquitin protein ligase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126941309-4	chr7	126941212	126941412	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172747, intron 2 of 5)	intron (NM_172747, intron 2 of 5)	7847.0	NM_001347657	233879.0	Mm.444143	NM_001039645	ENSMUSG00000046378	Asphd1	A830007L07Rik|Gm168	aspartate beta-hydroxylase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44512208-4	chr9	44512146	44512346	+	969.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_030256)	TTS (NM_030256)	13110.0	NM_030256	80288.0	Mm.370270	NM_030256	ENSMUSG00000063382	Bcl9l	B9L|BC003321|BCL9-2|DLNB11	B cell CLL/lymphoma 9-like	protein-coding	2.339968899593	2.09823407007045	1.40729999799543	2.72534023629523	2.68118012589809	2.53117810880208	2.32930625361722	2.2589450505873	0.499283627931685	0.570031178000062	0.962718661854691
Merged-chr2-165980264-1	chr2	165980164	165980364	+	771.0	f1_c57bl6.idr	Intergenic	Intergenic	-12373.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-25860530-2	chr15	25860430	25860630	+	844.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001034851, intron 1 of 8)	intron (NM_001034851, intron 1 of 8)	17232.0	NM_001034851	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115626298-2	chr11	115626255	115626455	+	994.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252395, intron 1 of 7)	intron (NM_001252395, intron 1 of 7)	1940.0	NM_001252394	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-103685982-2	chr5	103685882	103686082	+	691.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-30250.0	NM_001163550	74218.0	Mm.159141	NM_028824	ENSMUSG00000029320	1700016H13Rik	-	RIKEN cDNA 1700016H13 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-65675947-1	chr18	65675847	65676047	+	750.0	f1_balb.idr	intron (NM_001361052, intron 6 of 8)	intron (NM_001361052, intron 6 of 8)	-22321.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	-1.5356785800515	-1.50457819905931	-1.51398321097173	-1.52170876778291	-1.25174950685677	-1.50254009374394	-1.51185412242675	-1.37234212311997	1.86472964096384	0.593287162270504	1
Merged-chr13-23556228-4	chr13	23556084	23556284	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_145713)	TTS (NM_145713)	1152.0	NM_145713	14957.0	Mm.247046	NM_145713	ENSMUSG00000052565	Hist1h1d	H1.3|H1D|H1f3|H1s-4	histone cluster 1, H1d	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120347600-4	chr11	120347497	120347697	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_105900)	promoter-TSS (NR_105900)	-184.0	NR_105900	102465564.0		NR_105900	ENSMUSG00000098955	Mir6935	Gm27344|mmu-mir-6935	microRNA 6935	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-65507034-3	chr18	65506923	65507123	+	999.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_105742, intron 3 of 6)	intron (NR_105742, intron 3 of 6)	-73207.0	NM_207255	328977.0	Mm.286232	NM_207255	ENSMUSG00000042439	Zfp532	C530030I18Rik|Znf532|mKIAA1629	zinc finger protein 532	protein-coding	3.95135296360694	3.6818693734346	3.10507207053052	4.52740247452601	4.66651430522201	4.37864728356018	4.12237815837444	4.17468246390882	0.58136545592568	0.212638909541416	0.702047781144169
Merged-chr10-127058412-4	chr10	127058323	127058523	+	977.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033262, intron 1 of 3)	intron (NM_001033262, intron 1 of 3)	1761.0	NM_001033262	216438.0	Mm.37892	NM_001033262	ENSMUSG00000040502	March9	AI608492|BC019560	membrane-associated ring finger (C3HC4) 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-106318335-2	chr9	106318303	106318503	+	965.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027354, intron 9 of 10)	intron (NM_027354, intron 9 of 10)	37342.0	NM_027354	70235.0	Mm.23054	NM_027354	ENSMUSG00000023345	Poc1a	2510040D07Rik|Wdr51a|cha	POC1 centriolar protein A	protein-coding	1.10618075264438	0.975348802027333	1.98393975774279	2.08752533578509	1.53436206495219	0.97943459694977	1.53479050885711	1.73341933290057	-0.5411493689827	0.665657488982029	0.992380258859526
Merged-chr13-24833369-2	chr13	24833269	24833469	+	547.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019551, intron 2 of 6)	intron (NM_019551, intron 2 of 6)	1710.0	NM_019551	56196.0	Mm.427162	NM_019551	ENSMUSG00000035958	Tdp2	D13Ertd656e|Ttrap	tyrosyl-DNA phosphodiesterase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-128628474-2	chr4	128628374	128628574	+	873.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9855.0	NM_205823	384059.0	Mm.331901	NM_205823	ENSMUSG00000062545	Tlr12	Gm1365|Tlr11	toll-like receptor 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-125561448-3	chr1	125561351	125561551	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028787, intron 1 of 15)	intron (NM_028787, intron 1 of 15)	449.0	NM_028787	74150.0	Mm.28654	NM_028787	ENSMUSG00000026342	Slc35f5	1300003P13Rik|AI646727	solute carrier family 35, member F5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-137314551-4	chr7	137314448	137314648	+	904.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010096)	promoter-TSS (NM_010096)	-103.0	NM_010096	13593.0	Mm.258708	NM_010096	ENSMUSG00000010476	Ebf3	3110018A08Rik|O/E-2|mKIAA4201	early B cell factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-98003363-2	chr6	98003219	98003419	+	887.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001178049, intron 5 of 9)	intron (NM_001178049, intron 5 of 9)	11536.0	NM_008601	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	2.64829578378576	2.46438871147063	2.37714814570824	1.73517164777182	2.76415407293718	2.89402494475562	3.88723235310615	2.99687734606053	1.62271508112448	0.0280269230802369	0.226188580571759
Merged-chr7-51987076-4	chr7	51986994	51987194	+	899.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001330607, intron 7 of 7)	intron (NM_001330607, intron 7 of 7)	18620.0	NR_027704	75744.0	Mm.386823	NM_001160345	ENSMUSG00000074093	Svip	1700006C13Rik|6620401M08Rik	small VCP/p97-interacting protein	protein-coding	0.167203997642761	-0.0455792140757951	0.337491692556043	0.205247729866909	0.35062706392785	-0.0447714800980884	-0.0483548032810361	-0.0513764592286075	-0.967774082156293	0.658616032031851	1
Merged-chr8-108599821-3	chr8	108599691	108599891	+	696.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15114.0	NR_077224	109215.0	Mm.65282	NR_077224	ENSMUSG00000110613	Lncbate1	3010033K07Rik|Lnc-BATE1	brown adipose tissue enriched long non-coding RNA 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-158134533-2	chr2	158134433	158134633	+	857.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_009373, intron 3 of 12)	intron (NM_009373, intron 3 of 12)	11859.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71606291-1	chr8	71606191	71606391	+	658.0	f1_balb.idr	intron (NM_001166213, intron 13 of 14)	B3|SINE|B2	-4733.0	NM_146211	234407.0	Mm.240885	NM_146211	ENSMUSG00000034807	Colgalt1	2810024B22Rik|Glt25d1	collagen beta(1-O)galactosyltransferase 1	protein-coding	-0.0266722802486004	-0.00969585692310163	0.445181192900704	0.705112762978773	-0.0256102947026709	-0.00844495872238801	-0.0140239736962873	0.41730022581176	-1.59297013814415	0.482234255192234	1
Merged-chr5-122989822-2	chr5	122989712	122989912	+	890.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001003953)	promoter-TSS (NM_001003953)	458.0	NR_045820	109202.0	Mm.30769	NM_175405	ENSMUSG00000056735	A930024E05Rik	-	RIKEN cDNA A930024E05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-69128986-4	chr2	69128881	69129081	+	956.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	AT_rich|Low_complexity|Low_complexity	-6819.0	NM_181547	329416.0	Mm.90047	NM_181547	ENSMUSG00000034738	Nostrin	Daip2|mDaIP2	nitric oxide synthase trafficker	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-173740805-5	chr1	173740698	173740898	+	772.049988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001204910, intron 1 of 7)	intron (NM_001204910, intron 1 of 7)	1011.0	NM_001204910	226691.0	Mm.440876	NM_001204910	ENSMUSG00000073490	Ifi207	AI607873|Pyhin-A|pyhinA	interferon activated gene 207	protein-coding	2.78324684057882	1.83858173966497	2.23925878398882	1.73241142302938	2.96906624341668	2.03689064607385	1.58317329568367	2.18667106576587	0.188655811057223	0.839503390850957	0.998431161219273
Merged-chr2-129547554-2	chr2	129547454	129547654	+	604.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10952.0	NM_177653	228592.0	Mm.452175	NM_177653	ENSMUSG00000043727	F830045P16Rik	Sirpb3	RIKEN cDNA F830045P16 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-47037531-3	chr4	47037542	47037742	+	627.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151464, intron 8 of 16)	intron (NR_151464, intron 8 of 16)	19664.0	NR_151464	75691.0	Mm.86866	NM_001024136	ENSMUSG00000066191	Anks6	2210417J20Rik|Ankrd14|Gm635|SamCystin|Samd6|b2b1801.1Clo	ankyrin repeat and sterile alpha motif domain containing 6	protein-coding	-1.08442814443595	-1.19668122519392	-1.20670852618424	-1.06055078801204	-1.08086552551595	-1.19450826723944	-1.20443856503221	-1.05804698911564	0.0367053573363311	0.990062574807593	1
Merged-chr12-65074720-3	chr12	65074638	65074838	+	632.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013902)	promoter-TSS (NM_013902)	-800.0	NM_013902	30795.0	Mm.28480	NM_013902	ENSMUSG00000020949	Fkbp3	25kDa|FKBP-3|FKBP25	FK506 binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-29856499-2	chr7	29856406	29856606	+	710.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MERVL_2A-int|LTR|ERVL	-2858.0	NM_173738	233057.0	Mm.296864	NM_173738	ENSMUSG00000050855	Zfp940	-	zinc finger protein 940	protein-coding	2.48317374086769	2.98422198549464	2.97110411427416	2.61634546749199	1.84981401977863	2.90980317335389	1.99713689613032	2.72868812633513	-0.663824545305844	0.39247810157566	0.881258234308592
Merged-chr18-67699752-4	chr18	67699660	67699860	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008977, intron 2 of 9)	intron (NM_008977, intron 2 of 9)	24861.0	NM_001127177	19255.0	Mm.260433	NM_008977	ENSMUSG00000024539	Ptpn2	AI325124|Ptpt|TC-PTP	protein tyrosine phosphatase, non-receptor type 2	protein-coding	1.86159243183665	2.09468684995196	1.75563423346667	1.84333016542398	1.49123456034782	1.19494540658652	2.58391023762572	1.85285068990141	0.0486768172711528	0.962862890906784	0.998431161219273
Merged-chr14-103188308-2	chr14	103188208	103188408	+	600.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_207215, intron 49 of 84)	intron (NM_207215, intron 49 of 84)	-88742.0	NM_001360342	50789.0	Mm.214746	NM_015822	ENSMUSG00000022124	Fbxl3	AU041772|AW212966|FBK|Fbl3a|Fbxl3a|Ovtm|Play68	F-box and leucine-rich repeat protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-116256321-4	chr3	116256216	116256416	+	830.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2832.0	NM_022427	64378.0	Mm.40025	NM_022427	ENSMUSG00000068696	Gpr88	AW061286|Strg	G-protein coupled receptor 88	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-109468373-4	chr11	109468271	109468471	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029842, intron 1 of 5)	intron (NM_001029842, intron 1 of 5)	4858.0	NM_134038	104681.0	Mm.265874	NM_134038	ENSMUSG00000041920	Slc16a6	AW743111|ESTM12|MCT 6|MCT 7|MCT6	solute carrier family 16 (monocarboxylic acid transporters), member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-176810266-2	chr1	176810166	176810366	+	735.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3142.0	NM_001099637	545389.0	Mm.269991	NM_001024722	ENSMUSG00000057335	Cep170	4933426L22Rik|A330004A13Rik|AI195353	centrosomal protein 170	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-11779415-2	chr2	11779315	11779515	+	612.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177268, intron 1 of 6)	intron (NM_177268, intron 1 of 6)	1662.0	NM_177268	320816.0	Mm.260201	NM_177268	ENSMUSG00000047909	Ankrd16	2810455F06Rik|AI646698|D430029B21Rik	ankyrin repeat domain 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-23555990-4	chr1	23555876	23556076	+	923.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18611.0	NR_151529	105243890.0	Mm.383635	NR_151529		Gm28822	-	predicted gene 28822	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-45584246-4	chr17	45584152	45584352	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001199116)	TTS (NM_001199116)	8141.0	NM_022880	63959.0	Mm.29744	NM_022880	ENSMUSG00000023942	Slc29a1	1200014D21Rik|AA407560|ENT1	solute carrier family 29 (nucleoside transporters), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-75441515-4	chr9	75441414	75441614	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039522)	promoter-TSS (NM_001039522)	-10.0	NM_001039522	235497.0	Mm.41508	NM_001006122	ENSMUSG00000042487	Leo1	Gm185	Leo1, Paf1/RNA polymerase II complex component	protein-coding	-0.210177088229184	0.439443224440722	-0.199534230393719	-0.203528337019152	-0.209186558488326	0.450758645487594	-0.010088694126254	-0.20282999617612	0.339098933923037	0.886289942978501	1
Merged-chr2-45231776-4	chr2	45231669	45231869	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-114327.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-55517212-3	chr13	55517161	55517361	+	956.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3815.0	NM_001114088	67399.0	Mm.275648	NM_026131	ENSMUSG00000021493	Pdlim7	LMP	PDZ and LIM domain 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-34547265-4	chr12	34547160	34547360	+	862.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271386, intron 3 of 27)	L1M5|LINE|L1	-18371.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-59208695-3	chr19	59208584	59208784	+	758.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10964.0	NM_207261	332396.0	Mm.329947	NM_207261	ENSMUSG00000040901	Kcnk18	Gm781|Tresk|Tresk-2|Trik	potassium channel, subfamily K, member 18	protein-coding	-1.58994551673671	-1.55912852307891	-1.56844783632235	-1.57610299769523	-1.18549093183599	-1.55710898902261	-1.56633814807757	-1.57473272746952	1.78703309985663	0.610309988231842	1
Merged-chr1-110671449-1	chr1	110671349	110671549	+	551.0	f1_balb.idr	Intergenic	MTA_Mm-int|LTR|ERVL-MaLR	306144.0	NM_001356415	227485.0	Mm.322070	NM_001081386	ENSMUSG00000047216	Cdh19	-	cadherin 19, type 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-151968019-4	chr2	151967931	151968131	+	838.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_035478)	promoter-TSS (NR_035478)	-414.0	NR_035478	100316704.0		NR_035478	ENSMUSG00000088491	Mir1953	mir-1953|mmu-mir-1953	microRNA 1953	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-147431720-2	chr4	147431620	147431820	+	886.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039209, intron 1 of 2)	intron (NM_001039209, intron 1 of 2)	-121557.0	NM_001014397	433804.0	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154	zinc finger protein 985	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-95512872-2	chr10	95512772	95512972	+	736.950012	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-2290.0	NM_080560	93765.0	Mm.371667	NM_080560	ENSMUSG00000074781	Ube2n	1500026J17Rik|AL022654|BB101821|UBC13	ubiquitin-conjugating enzyme E2N	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-60809007-3	chr2	60808916	60809116	+	840.43335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001141932, intron 2 of 14)	MLT1C|LTR|ERVL-MaLR	72422.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-105790507-7	chr1	105790386	105790586	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009399, intron 1 of 9)	intron (NM_009399, intron 1 of 9)	9763.0	NM_009399	21934.0	Mm.6251	NM_009399	ENSMUSG00000026321	Tnfrsf11a	Ly109|ODFR|OFE|Rank|TRANCE-R|mRANK	tumor necrosis factor receptor superfamily, member 11a, NFKB activator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-149518124-4	chr4	149518022	149518222	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023465)	promoter-TSS (NM_023465)	-119.0	NM_023465	67087.0	Mm.299735	NM_023465	ENSMUSG00000028988	Ctnnbip1	1110008O09Rik|2310001I19Rik|AW457332|Catnbip1|Icat	catenin beta interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-49031446-4	chr6	49031355	49031555	+	964.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5063.0	NM_053110	93695.0	Mm.302602	NM_053110	ENSMUSG00000029816	Gpnmb	DC-HIL|Dchil|ipd	glycoprotein (transmembrane) nmb	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-129284696-3	chr6	129284623	129284823	+	772.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9354.0	NM_001033122	12515.0	Mm.74745	NM_001033122	ENSMUSG00000030156	Cd69	5830438K24Rik|AI452015|AIM|VEA	CD69 antigen	protein-coding	1.13374577202888	0.536847274620587	0.526567397045456	1.1129188652199	1.04870405878097	0.539147743828155	1.47195460921906	0.519955608489846	0.458032785848742	0.788769584620956	0.998431161219273
Merged-chr2-27734623-3	chr2	27734476	27734676	+	856.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290482, intron 1 of 9)	intron (NM_001290482, intron 1 of 9)	23993.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100227421-4	chr7	100227377	100227577	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027629)	promoter-TSS (NM_027629)	-130.0	NM_027629	70974.0	Mm.440524	NM_027629	ENSMUSG00000030729	Pgm2l1	4931406N15Rik|AI553438|BM32A	phosphoglucomutase 2-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-75175153-5	chr14	75174916	75175116	+	844.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008879, intron 1 of 16)	intron (NM_008879, intron 1 of 16)	38591.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-87374344-4	chr12	87374245	87374445	+	821.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011479, intron 1 of 11)	intron (NM_011479, intron 1 of 11)	14010.0	NM_011479	20773.0	Mm.565	NM_011479	ENSMUSG00000021036	Sptlc2	LCB2|LCB2a|Spt2	serine palmitoyltransferase, long chain base subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-132714351-3	chr7	132714252	132714452	+	936.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_175268, exon 5 of 5)	3' UTR (NM_175268, exon 5 of 5)	62564.0	NM_001347630	77938.0	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32655812-2	chr2	32655712	32655912	+	657.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001146348, intron 1 of 14)	intron (NM_001146348, intron 1 of 14)	3483.0	NR_035479	100316776.0		NR_035479	ENSMUSG00000093336	Mir1954	mmu-mir-1954	microRNA 1954	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-157064205-4	chr2	157064110	157064310	+	909.658325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164663, intron 1 of 14)	intron (NM_001164663, intron 1 of 14)	15055.0	NM_001164663	320706.0	Mm.79466	NM_001164663	ENSMUSG00000055485	Soga1	9830001H06Rik|AI426038|D430036N24Rik|Soga	suppressor of glucose, autophagy associated 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91867881-2	chr16	91867781	91867981	+	775.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110275, intron 26 of 28)	intron (NM_001110275, intron 26 of 28)	63749.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116604599-2	chr11	116604499	116604699	+	742.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001167680, intron 6 of 18)	intron (NM_001167680, intron 6 of 18)	10912.0	NM_009591	11298.0	Mm.42233	NM_009591	ENSMUSG00000020804	Aanat	AA-NAT|Nat-2|Nat4|Snat	arylalkylamine N-acetyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-112042871-1	chr7	112042771	112042971	+	654.5	f0_balb.idr	intron (NM_133758, intron 1 of 27)	L1MDa|LINE|L1	19365.0	NM_177249	74996.0	Mm.16974	NM_133758	ENSMUSG00000059263	Usp47	4930502N04Rik|A630020C16Rik	ubiquitin specific peptidase 47	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126086367-4	chr7	126086281	126086481	+	943.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3970.0	NM_001358885	269994.0	Mm.39599	NM_001101488	ENSMUSG00000046182	Gsg1l	AI852434|C230098I05Rik|G630023A01Rik|Gm637|g1l	GSG1-like	protein-coding	2.95518238340067	2.91878598857642	2.37615330641519	1.34715881612065	3.0405232443669	2.94079325079546	2.39572314063486	1.35338216214745	0.0835640558423099	0.929932002087993	0.998431161219273
Merged-chr11-115381994-2	chr11	115381894	115382094	+	646.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080929)	promoter-TSS (NM_001080929)	78.0	NM_001080929	237988.0	Mm.102872	NM_001080929	ENSMUSG00000050910	Cdr2l	D030068L24Rik|Gm21	cerebellar degeneration-related protein 2-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35242775-4	chr17	35242695	35242895	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252457)	promoter-TSS (NM_001252457)	-22.0	NM_001252457	53817.0	Mm.439827	NM_019693	ENSMUSG00000019432	Ddx39b	0610030D10Rik|AI428441|Bat-1|Bat1|Bat1a|D17H6S81E|D17H6S81E-1|D6S81Eh	DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B	protein-coding	4.32979590672255	3.82899202777677	4.61549333212178	4.54114115055437	4.1362030613743	4.17785139457941	4.04286843763682	4.64356755064709	-0.121315730162893	0.768562622509825	0.998431161219273
Merged-chr7-19180485-2	chr7	19180385	19180585	+	585.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162996)	promoter-TSS (NM_001162996)	-685.0	NM_001162996	72205.0	Mm.154121	NM_028153	ENSMUSG00000040811	Eml2	1600029N02Rik|EMAP-2	echinoderm microtubule associated protein like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120630112-4	chr11	120629968	120630168	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010756, intron 1 of 2)	intron (NM_010756, intron 1 of 2)	3479.0	NM_010756	17134.0	Mm.268010	NM_010756	ENSMUSG00000051510	Mafg	AA545192|C630022N07Rik	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein G (avian)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-51107046-4	chr13	51106949	51107149	+	989.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001283029, intron 1 of 5)	MTE2b|LTR|ERVL-MaLR	5502.0	NM_001283029	20729.0	Mm.188432	NM_011462	ENSMUSG00000021395	Spin1	Spin	spindlin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-12918474-2	chr13	12918374	12918574	+	709.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F3|LINE|L1	86856.0	NM_031191	18811.0	Mm.88796	NM_031191	ENSMUSG00000079092	Prl2c2	Ghd2|MRP-1|PLF-1|Plf|Plf1	prolactin family 2, subfamily c, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-99190958-4	chr10	99190836	99191036	+	993.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153333, intron 11 of 12)	B3|SINE|B2	-72295.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-6743367-2	chr2	6743267	6743467	+	670.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110232, intron 3 of 15)	intron (NM_001110232, intron 3 of 15)	-21705.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-149436893-1	chr4	149436793	149436993	+	592.0	f1_balb.idr	Intergenic	MMVL30-int|LTR|ERV1	-10262.0	NM_022022	63958.0	Mm.415260	NM_022022	ENSMUSG00000028960	Ube4b	4930551I19Rik|4933406G05Rik|AU014668|D4Bwg0973e|UFD2|UFD2a|Ufd2p|mKIAA0684	ubiquitination factor E4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-79110222-4	chr18	79110139	79110339	+	913.875	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053099)	promoter-TSS (NM_053099)	-848.0	NM_053099	240427.0	Mm.312871	NM_053099	ENSMUSG00000024548	Setbp1	C130092E12|Seb|mKIAA0437	SET binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-149083652-3	chr3	149083548	149083748	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-129013.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-142448252-4	chr5	142448159	142448359	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199068, intron 2 of 8)	intron (NM_199068, intron 2 of 8)	-15672.0	NM_172725	231855.0	Mm.78250	NM_172725	ENSMUSG00000039623	Ap5z1	C330006K01Rik	adaptor-related protein complex 5, zeta 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69042323-2	chr11	69042273	69042473	+	740.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	-3264.0	NM_011496	20877.0	Mm.3488	NM_011496	ENSMUSG00000020897	Aurkb	AIM-1|AIRK2|AL022959|Aik2|Aim1|Ark2|AurB|IPL1|STK-1|Stk12|Stk5	aurora kinase B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114209076-4	chr11	114208982	114209182	+	955.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10824.0	NR_045930	73536.0	Mm.54275	NR_045930	ENSMUSG00000078600	1700092K14Rik	-	RIKEN cDNA 1700092K14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-88638897-3	chr8	88638810	88639010	+	939.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2782.0	NM_027840	71607.0	Mm.270607	NM_027840	ENSMUSG00000031662	Snx20	9130017C17Rik	sorting nexin 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-8590623-2	chr11	8590523	8590723	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 3 of 30)	intron (NM_001083587, intron 3 of 30)	73912.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-127976704-4	chr1	127976599	127976799	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285945, intron 12 of 20)	intron (NM_001285945, intron 12 of 20)	107926.0	NM_178690	226407.0	Mm.489713	NM_178690	ENSMUSG00000036104	Rab3gap1	1700003B17Rik|4732493F09Rik|AL117896|Rab3gap|p130	RAB3 GTPase activating protein subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-121953777-3	chr3	121953677	121953877	+	836.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172525, intron 1 of 22)	CpG	548.0	NM_172525	214137.0	Mm.229287	NM_172525	ENSMUSG00000039831	Arhgap29	6720461J18Rik|A830014I19|AU040217|B130017I01Rik|C76601|Parg1	Rho GTPase activating protein 29	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-59616702-4	chr10	59616608	59616808	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033259)	promoter-TSS (NM_001033259)	-16.0	NM_001033259	215999.0	Mm.296470	NM_001033259	ENSMUSG00000009647	Mcu	2010012O16Rik|AV064928|C10orf42|Ccdc109a|D130073L02Rik|Gm64	mitochondrial calcium uniporter	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-35992338-2	chr1	35992238	35992438	+	585.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-76062.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-50753260-4	chr16	50753159	50753359	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20486.0	NR_028300	68190.0	Mm.139089	NR_028300		Dubr	5330426P16Rik|Dum	Dppa2 upstream binding RNA	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-113762528-2	chr11	113762428	113762628	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10713.0	NM_001163346	56699.0	Mm.293378	NM_020006	ENSMUSG00000041598	Cdc42ep4	1500041M20Rik|Borg4|CEP4	CDC42 effector protein (Rho GTPase binding) 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-12737772-2	chr18	12737672	12737872	+	750.916626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_028341)	TTS (NM_028341)	-3583.0	NM_181731	71132.0	Mm.179740	NM_027687	ENSMUSG00000024430	Cabyr	1700016C01Rik|4933421A18Rik|CBP86|FSP-2	calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-61373691-3	chr9	61373639	61373839	+	989.866699	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083928, intron 1 of 19)	CpG	1373.0	NM_001083927	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-100442207-1	chr3	100442107	100442307	+	1000.0	f1_c57bl6.idr	Intergenic	ERVB7_2B-LTR_MM|LTR|ERVK	15802.0	NR_040543	73806.0	Mm.396549	NR_040543	ENSMUSG00000086923	4930406D18Rik	-	RIKEN cDNA 4930406D18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98917673-4	chr11	98917589	98917789	+	947.783325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025779, intron 9 of 11)	intron (NM_001025779, intron 9 of 11)	9538.0	NM_011799	23834.0	Mm.20912	NM_011799	ENSMUSG00000017499	Cdc6	CDC18L	cell division cycle 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99434465-1	chr7	99434365	99434565	+	641.0	f1_balb.idr	intron (NM_001362168, intron 4 of 17)	intron (NM_001362168, intron 4 of 17)	-31539.0	NM_028145	72184.0	Mm.153585	NM_028145	ENSMUSG00000035298	Klhl35	2810406K13Rik	kelch-like 35	protein-coding	0.623464865895692	0.481988934722851	0.470424327722682	1.30551164307432	0.448313252920214	1.44480433396632	0.47299275149642	1.31524551025653	0.991025733682971	0.567176282363473	0.962562732139494
Merged-chr4-132517992-2	chr4	132517892	132518092	+	617.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-7536.0	NM_144907	230784.0	Mm.23608	NM_144907	ENSMUSG00000028893	Sesn2	HI95|SEST2|Ses2	sestrin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152832532-4	chr1	152832419	152832619	+	987.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010877, intron 11 of 15)	RSINE1|SINE|B4	32366.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81613061-2	chr10	81612961	81613161	+	563.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	6753.0	NR_030677	268319.0	Mm.131825	NM_001033363	ENSMUSG00000074862	BC025920	-	zinc finger protein pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-55568518-2	chr12	55568418	55568618	+	846.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3313.0	NM_001277340	79459.0	Mm.392781	NM_001277340	ENSMUSG00000063129	Aldoart2	4933425L11Rik|Aldo1-ps1|Aldoa-ps1	aldolase 1 A, retrogene 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-84031467-4	chr6	84031364	84031564	+	846.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310152, intron 1 of 53)	MTD|LTR|ERVL-MaLR	12078.0	NM_021469	26903.0	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-151963585-4	chr1	151963503	151963703	+	876.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197990, intron 3 of 5)	intron (NM_197990, intron 3 of 5)	126717.0	NM_197990	69399.0	Mm.278031	NM_197990	ENSMUSG00000032666	1700025G04Rik	2610510E02Rik|2900042O04Rik	RIKEN cDNA 1700025G04 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-15717568-3	chr9	15717517	15717717	+	940.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172289, intron 1 of 10)	intron (NM_172289, intron 1 of 10)	7879.0	NM_172289	234967.0	Mm.138815	NM_172289	ENSMUSG00000043885	Slc36a4	6330573I15Rik|PAT4	solute carrier family 36 (proton/amino acid symporter), member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84191710-1	chr8	84191610	84191810	+	1000.0	f1_balb.idr	Intergenic	Intergenic	-12749.0	NR_029821	723819.0		NR_029821	ENSMUSG00000065483	Mir181c	Mirn181c|mir-181c	microRNA 181c	ncRNA	1.65196576036404	1.98634934431258	1.91217598632374	0.961040961605682	1.13308247423023	1.61456800131991	0.980332500037812	1.95876757596767	-0.623010422981078	0.616755757399936	0.977454074438997
Merged-chr10-78096801-3	chr10	78096700	78096900	+	743.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27432.0	NM_015790	50723.0	Mm.17819	NM_015790	ENSMUSG00000000732	Icosl	AU044799|B7-H2|B7RP-1|B7h|BG071784|GI50|GL50|GL50-B|ICOS-L|Icoslg|LICOS|Ly115l|mKIAA0653	icos ligand	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-118816697-3	chr14	118816590	118816790	+	740.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160097, intron 1 of 3)	intron (NM_001160097, intron 1 of 3)	28819.0	NM_001160097	58187.0	Mm.390755	NM_021386	ENSMUSG00000022132	Cldn10	6720456I16Rik|Cldn10a|Cldn10b|D14Ertd728e	claudin 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-47127731-3	chr19	47127639	47127839	+	822.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011053, intron 30 of 35)	(TG)n|Simple_repeat|Simple_repeat	10555.0	NM_133746	72691.0	Mm.31663	NM_133746	ENSMUSG00000033033	Calhm2	2810048G17Rik|Fam26b	calcium homeostasis modulator 2	protein-coding	0.780193799015943	0.170653446988828	0.164841236945863	0.576532476098236	0.712821067278549	0.171964136970401	0.166122853820565	0.323968045746028	-0.572167186543628	0.776497625661835	1
Merged-chr2-165325291-2	chr2	165325191	165325391	+	818.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_080287, intron 1 of 20)	intron (NM_080287, intron 1 of 20)	1188.0	NM_080287	140579.0	Mm.35064	NM_080287	ENSMUSG00000017670	Elmo2	1190002F24Rik|CED-12	engulfment and cell motility 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-114439547-4	chr8	114439456	114439656	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019573)	promoter-TSS (NM_019573)	-96.0	NM_019573	80707.0	Mm.440420	NM_019573	ENSMUSG00000004637	Wwox	5330426P09Rik|9030416C10Rik|WOX1	WW domain-containing oxidoreductase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124472897-2	chr6	124472797	124472997	+	737.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8113.0	NM_153508	232370.0	Mm.193701	NM_153508	ENSMUSG00000008153	Clstn3	CSTN3|Cs3|Cst-3|alc-beta	calsyntenin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-97576416-2	chr15	97576316	97576516	+	716.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	129406.0	NM_028003	71919.0	Mm.12255	NM_028003	ENSMUSG00000022466	Rpap3	2310042P20Rik|D15Ertd682e	RNA polymerase II associated protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-72583222-4	chr1	72583124	72583324	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018817)	promoter-TSS (NM_018817)	-27.0	NM_018817	54380.0	Mm.274232	NM_018817	ENSMUSG00000039354	Smarcal1	6030401P21Rik|AI851716|Mharp	SWI/SNF related matrix associated, actin dependent regulator of chromatin, subfamily a-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-44794587-3	chr16	44794489	44794689	+	863.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_021325, exon 7 of 7)	3' UTR (NM_021325, exon 7 of 7)	-26139.0	NM_207244	239849.0	Mm.445045	NM_207244	ENSMUSG00000062082	Cd200r4	F630107N04Rik|MCD200RLa	CD200 receptor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-7271626-4	chr10	7271572	7271772	+	937.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59435.0	NM_172546	215748.0	Mm.37984	NM_172546	ENSMUSG00000015202	Cnksr3	6820402C05|BC024086|Magi1	Cnksr family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-36904483-2	chr19	36904383	36904583	+	772.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	15116.0	NM_028263	72514.0	Mm.41674	NM_028263	ENSMUSG00000047632	Fgfbp3	2610306H15Rik|Fgf-bp3	fibroblast growth factor binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84635310-2	chr8	84635210	84635410	+	874.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252060, intron 43 of 47)	intron (NM_001252060, intron 43 of 47)	27542.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-143209464-2	chr4	143209364	143209564	+	610.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001256380, intron 1 of 7)	intron (NM_001256380, intron 1 of 7)	3245.0	NM_001081355	110593.0	Mm.332020	NM_001081355	ENSMUSG00000057637	Prdm2	4833427P12Rik|E330024L24Rik|Gm1033|Gm19732|KMT8|Riz|Riz1|Znfpr1c1	PR domain containing 2, with ZNF domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-37358886-4	chr2	37358803	37359003	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026176, intron 1 of 3)	intron (NM_026176, intron 1 of 3)	429.0	NM_026176	67466.0	Mm.30709	NM_026176	ENSMUSG00000009030	Pdcl	1200011E13Rik|AW108059|PhLP1	phosducin-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70024896-4	chr14	70024796	70024996	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028560, intron 4 of 6)	intron (NM_028560, intron 4 of 6)	-52549.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-85736618-4	chr1	85736515	85736715	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177055)	promoter-TSS (NM_177055)	-9.0	NM_177055	319997.0	Mm.116691	NM_177055	ENSMUSG00000052760	A630001G21Rik	-	RIKEN cDNA A630001G21 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-105526755-3	chr5	105526665	105526865	+	946.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133897, intron 1 of 3)	intron (NM_133897, intron 1 of 3)	7294.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-65672880-2	chr17	65672780	65672980	+	619.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133685, intron 5 of 6)	RLTR13D5|LTR|ERVK	-30676.0	NM_001146002	213272.0	Mm.255732	NM_153519	ENSMUSG00000050612	Txndc2	AU021712|Sptrx-1|Sptrx1|Trx4	thioredoxin domain containing 2 (spermatozoa)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-75957011-4	chr3	75956923	75957123	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175193)	promoter-TSS (NM_175193)	-74.0	NM_001291069	73124.0	Mm.249232	NM_175193	ENSMUSG00000034109	Golim4	3110027H23Rik|GIMPC|GPP130|Golph4|P138	golgi integral membrane protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-85034873-4	chr8	85034754	85034954	+	940.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2061.0	NM_145390	212999.0	Mm.220357	NM_145390	ENSMUSG00000031691	Tnpo2	1110034O24Rik|AA414969|AI464345|AI852433|IPO3|Knpb2b|Kpnb2b|TRN2	transportin 2 (importin 3, karyopherin beta 2b)	protein-coding	-0.559431603824023	-0.547636313505212	-0.551500431147055	0.173377459122431	-0.169022371180216	-0.546765323304175	-0.550648149854937	-0.553961013357314	-1.17599855576443	0.676132443172956	1
Merged-chr19-4262328-2	chr19	4262228	4262428	+	590.75	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001356620, exon 14 of 14)	3' UTR (NM_001356620, exon 14 of 14)	1550.0	NR_105951	102465595.0		NR_105951	ENSMUSG00000099290	Mir6985	Gm27719|mmu-mir-6985	microRNA 6985	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81495693-3	chr10	81495623	81495823	+	783.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134009, intron 1 of 13)	intron (NM_134009, intron 1 of 13)	640.0	NM_134009	103425.0	Mm.302791	NM_134009	ENSMUSG00000020238	Ncln	3100002P13Rik|AW120537	nicalin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-150782545-4	chr2	150782450	150782650	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-4246.0	NM_153781	110078.0	Mm.222584	NM_153781	ENSMUSG00000033059	Pygb	-	brain glycogen phosphorylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59565932-2	chr15	59565817	59566017	+	612.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_026746, intron 4 of 6)	intron (NM_026746, intron 4 of 6)	-82737.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	-0.953721354153451	-1.41025554057125	-1.42001056191158	-1.42802362688808	-1.44024889148474	-1.40814158675276	-1.41780223890411	-1.42658929208844	-2.11310844444413	0.543369238581748	1
Merged-chr10-60252753-4	chr10	60252644	60252844	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24884.0	NM_001146123	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-40230509-4	chr1	40230435	40230635	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008362, intron 1 of 10)	intron (NM_008362, intron 1 of 10)	5455.0	NM_008362	16177.0	Mm.896	NM_008362	ENSMUSG00000026072	Il1r1	CD121a|CD121b|IL-1R1|IL-iR|Il1r-1	interleukin 1 receptor, type I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-86811565-2	chr11	86811465	86811665	+	855.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3905.0	NM_026191	67487.0	Mm.260627	NM_026191	ENSMUSG00000018425	Dhx40	2410016C14Rik|ARG147|DDX40|PAD	DEAH (Asp-Glu-Ala-His) box polypeptide 40	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-108899460-2	chr3	108899360	108899560	+	882.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-9452.0	NM_001165965	320181.0	Mm.244233	NM_177091	ENSMUSG00000045326	Fndc7	E230011A21Rik	fibronectin type III domain containing 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32356152-2	chr2	32356052	32356252	+	854.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2823.0	NM_010065	13429.0	Mm.44736	NM_010065	ENSMUSG00000026825	Dnm1	AI838169|Dnm|Ftfl|mKIAA4093	dynamin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-75156313-4	chr5	75156252	75156452	+	877.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083316, intron 1 of 22)	CpG	186.0	NM_001083316	18595.0	Mm.221403	NM_011058	ENSMUSG00000029231	Pdgfra	AI115593|CD140a|Pdgfr-2	platelet derived growth factor receptor, alpha polypeptide	protein-coding	3.23109971265251	3.97999713857736	3.7913129744562	3.86355263672671	3.25857345761332	1.79196403310122	2.92222602220358	3.88227494719794	-0.864828481991784	0.175912932994397	0.645775639984829
Merged-chr14-73410296-4	chr14	73410179	73410379	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24990.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-38259753-1	chr5	38259653	38259853	+	815.333313	f1_c57bl6.idr	promoter-TSS (NM_001356960)	promoter-TSS (NM_001356960)	-432.0	NM_001356960	66309.0	Mm.256185	NM_025480	ENSMUSG00000067365	Tmem128	2810021O14Rik	transmembrane protein 128	protein-coding	1.84110102939652	2.51940695521149	1.67662601969409	0.90420778001819	1.4141430172457	1.21190841486387	1.54500705585405	0.907271418903656	-1.78008988397871	0.149114971814542	0.60074222871528
Merged-chr14-73237923-4	chr14	73237834	73238034	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175116)	promoter-TSS (NM_175116)	43.0	NM_175116	67168.0	Mm.390681	NM_175116	ENSMUSG00000033446	Lpar6	2610302I02Rik|P2ry5|P2y5	lysophosphatidic acid receptor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-52458763-2	chr2	52458663	52458863	+	707.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037099, intron 9 of 13)	MTB|LTR|ERVL-MaLR	-33889.0	NM_182994	75423.0	Mm.314378	NM_182994	ENSMUSG00000036093	Arl5a	2410015N24Rik|2810410P22Rik|AA408731|AW610751|Arl5|T25534	ADP-ribosylation factor-like 5A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-40812116-3	chr9	40812048	40812248	+	663.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	10875.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	2.41246236023182	2.60748384717345	1.37343412355794	2.98664006334348	2.34140099302107	2.25058658170821	2.02325863496519	2.10987099697051	-0.656355191899142	0.465694758014866	0.922736970596151
Merged-chr18-47155440-2	chr18	47155340	47155540	+	626.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	196564.0	NM_178377	69456.0	Mm.210734	NM_178377	ENSMUSG00000042705	Commd10	2310003A05Rik|AU019438|DRWMS2|Tg(Vav1-icre)A2Kio|Vav-cre|Vav-iCre|Vav1-Cre|VavCre	COMM domain containing 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34604007-7	chr17	34603894	34604094	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019403)	promoter-TSS (NM_019403)	-433.0	NM_019403	54197.0	Mm.274542	NM_019403	ENSMUSG00000015478	Rnf5	2410131O05Rik|AA407576|NG2	ring finger protein 5	protein-coding	4.70140597435484	4.82929771597729	5.26456008373161	5.16723412895692	4.90845097277781	5.04761029500014	6.01936472535303	4.75630577970227	0.317523321664662	0.376963557718322	0.869940000691393
Merged-chr14-57387165-4	chr14	57387058	57387258	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030004, intron 1 of 7)	intron (NM_030004, intron 1 of 7)	11325.0	NM_030004	68631.0	Mm.25539	NM_030004	ENSMUSG00000021947	Cryl1	1110025H08Rik|A230106J09Rik|C85932|gul3dh	crystallin, lambda 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94461777-2	chr10	94461677	94461877	+	849.400024	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 2 of 4)	B1_Mm|SINE|Alu	-53080.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-89140373-3	chr15	89140262	89140462	+	808.904724	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013871, exon 1 of 12)	exon (NM_013871, exon 1 of 12)	341.0	NM_013871	29857.0	Mm.38343	NM_013871	ENSMUSG00000022610	Mapk12	AW123708|Erk6|P38gamma|Prkm12|Sapk3	mitogen-activated protein kinase 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-50096669-4	chr16	50096552	50096752	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23800.0	NR_045935	224180.0	Mm.146439	NM_175010		Gm4827	B130050K08|EG224180	predicted gene 4827	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-53744699-4	chr18	53744608	53744808	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178686)	promoter-TSS (NM_178686)	-161.0	NM_178686	225523.0	Mm.193678	NM_178686	ENSMUSG00000048799	Cep120	A230075C01|AU016693|Ccdc100	centrosomal protein 120	protein-coding	-0.643947544515173	-0.633099188729109	-0.0641239051495042	-0.639399037742312	-0.643271268608958	-0.632296893744128	-0.168615286170003	-0.638920067900268	-0.377261004685945	0.896083238598253	1
Merged-chr11-120371417-2	chr11	120371317	120371517	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027980, intron 7 of 9)	intron (NM_027980, intron 7 of 9)	7329.0	NM_027980	71885.0	Mm.274890	NM_027980	ENSMUSG00000025384	Faap100	2310003H01Rik	Fanconi anemia core complex associated protein 100	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-3898241-4	chr7	3898143	3898343	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289428)	promoter-TSS (NM_001289428)	-93.0	NM_001289428	18729.0	Mm.326531	NM_008848		Pira6	12M1|Pira10|p91B	paired-Ig-like receptor A6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-34521602-4	chr19	34521503	34521703	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111100, intron 3 of 9)	intron (NM_001111100, intron 3 of 9)	5871.0	NM_001111100	16889.0	Mm.157545	NM_021460	ENSMUSG00000024781	Lipa	AA960673|Lal|Lip-1|Lip1	lysosomal acid lipase A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-58520187-2	chr13	58520087	58520287	+	698.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB7|LINE|L1	90690.0	NM_022317	114304.0	Mm.18188	NM_022317	ENSMUSG00000021553	Slc28a3	Cnt3	solute carrier family 28 (sodium-coupled nucleoside transporter), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-82764641-2	chr18	82764541	82764741	+	972.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5602.0	NR_045389	76961.0	Mm.396392	NR_045389	ENSMUSG00000101773	2210420H20Rik	-	RIKEN cDNA 2210420H20 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-59321455-2	chr3	59321355	59321555	+	669.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162884, intron 6 of 6)	intron (NM_001162884, intron 6 of 6)	22801.0	NM_001162884	242050.0	Mm.228086	NM_001162884	ENSMUSG00000036334	Igsf10	6530405F15Rik|9030224D03|AA409708|AA536958|AI414626|Adlican2|CMF608	immunoglobulin superfamily, member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-38645743-2	chr15	38645643	38645843	+	835.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16161.0	NM_025494	66335.0	Mm.276618	NM_025494	ENSMUSG00000022295	Atp6v1c1	1700025B18Rik|U13839	ATPase, H+ transporting, lysosomal V1 subunit C1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-78828507-3	chr11	78828412	78828612	+	672.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001076681, intron 1 of 3)	ID_B1|SINE|B4	1917.0	NM_001076681	66274.0	Mm.258932	NM_001076681	ENSMUSG00000072640	Lyrm9	1810012P15Rik	LYR motif containing 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30328843-1	chr2	30328743	30328943	+	589.0	f0_balb.idr	intron (NM_198304, intron 24 of 43)	ID_B1|SINE|B4	30473.0	NM_139302	227700.0	Mm.33343	NM_139302	ENSMUSG00000026860	Sh3glb2	SPAS-1	SH3-domain GRB2-like endophilin B2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-29714972-2	chr11	29714872	29715072	+	602.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_194054, intron 3 of 8)	intron (NM_194054, intron 3 of 8)	-3591.0	NM_024226	68585.0	Mm.192580	NM_024226	ENSMUSG00000020458	Rtn4	1110020G17Rik|AA407876|AA409940|AA960376|ASY|C130026I10Rik|NOGO|NSP-CL|NgA|Nogo-A|Nogo-B|Nogo-C|mKIAA0886|mKIAA4153	reticulon 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-88189731-3	chr6	88189625	88189825	+	877.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-4166.0	NM_001355253	14461.0	Mm.491156	NM_008090	ENSMUSG00000015053	Gata2	Gata-2	GATA binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-94285406-4	chr13	94285281	94285481	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029153)	promoter-TSS (NM_029153)	-100.0	NM_029153	107767.0	Mm.201455	NM_029153	ENSMUSG00000021687	Scamp1	4930505M11Rik|AI415563|AW122395	secretory carrier membrane protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-63895369-4	chr17	63895288	63895488	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286415, intron 1 of 17)	intron (NM_001286415, intron 1 of 17)	17322.0	NM_001286415	14158.0	Mm.23039	NM_008000	ENSMUSG00000000127	Fer	AV082135|C330004K01Rik|Fert|Fert2	fer (fms/fps related) protein kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-156295904-3	chr2	156295795	156295995	+	925.9111330000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172674, intron 13 of 17)	intron (NM_172674, intron 13 of 17)	-16578.0	NM_027585	70873.0	Mm.475234	NM_027585	ENSMUSG00000038085	Cnbd2	4921517L17Rik|5430421B09Rik|Cris	cyclic nucleotide binding domain containing 2	protein-coding	2.37862673298203	2.58629699814853	2.49638884101657	1.23720312457074	1.89763890770073	1.78863631536363	1.52329370607919	2.6046667063229	-0.585803093876792	0.557582874288533	0.960321604678676
Merged-chr4-47324462-2	chr4	47324362	47324562	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28760.0	NM_001312868	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-103262593-4	chr11	103262494	103262694	+	986.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016896, intron 1 of 15)	intron (NM_016896, intron 1 of 15)	4807.0	NM_016896	53859.0	Mm.158981	NM_016896	ENSMUSG00000020941	Map3k14	Nik|aly	mitogen-activated protein kinase kinase kinase 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-31947955-2	chr19	31947855	31948055	+	874.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001081074, exon 12 of 12)	3' UTR (NM_001081074, exon 12 of 12)	79194.0	NM_001081074	69865.0	Mm.87538	NM_001081074	ENSMUSG00000052595	A1cf	1810073H04Rik|ACF64|ACF65|ASP|Acf|MCM|MerCreMer|Tg(Myh6-cre/Esr1*)1Jmk|mer	APOBEC1 complementation factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-38396315-4	chr16	38396205	38396405	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_134102, exon 11 of 11)	3' UTR (NM_134102, exon 11 of 11)	34115.0	NM_022318	64082.0	Mm.390856	NM_022318	ENSMUSG00000022803	Popdc2	AV006127|Pop2	popeye domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-24677391-2	chr1	24677291	24677491	+	872.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1153.0	NM_026719	68421.0	Mm.336563	NM_026719	ENSMUSG00000073725	Lmbrd1	0910001K20Rik|AV347960	LMBR1 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-4806735-2	chr1	4806635	4806835	+	545.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1088.0	NM_001355712	18777.0	Mm.299955	NM_008866	ENSMUSG00000025903	Lypla1	APT-1|Gm39587|LPL-I|Pla1a	lysophospholipase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34262633-2	chr17	34262534	34262734	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207105)	promoter-TSS (NM_207105)	-593.0	NM_207105	14961.0	Mm.254067	NM_207105	ENSMUSG00000073421	H2-Ab1	AI845868|Abeta|H-2Ab|H2-Ab|I-Abeta|IAb|Ia-2|Ia2|Rmcs1	histocompatibility 2, class II antigen A, beta 1	protein-coding	3.70600280921107	3.55413600848758	2.16312203754714	1.86327856761201	3.73511342413351	3.4957917878682	2.85454197610232	3.8613995409606	0.732490181416675	0.297525290563162	0.800257675359925
Merged-chr14-117786069-1	chr14	117785969	117786169	+	674.5	f0_balb.idr	intron (NM_011821, intron 4 of 8)	intron (NM_011821, intron 4 of 8)	167778.0	NR_105747	102465148.0		NR_105747	ENSMUSG00000098648	Mir6239	Gm28025|mmu-mir-6239	microRNA 6239	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-89395568-1	chr7	89395468	89395668	+	714.0	f0_balb.idr	intron (NM_001360746, intron 1 of 14)	L1MA9|LINE|L1	8654.0	NM_001360746	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-44373029-4	chr11	44372902	44373102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27061.0	NM_001303244	16160.0	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	3.56900603509649	3.40332757425581	3.21623592049175	2.77892619814389	2.74668934544488	2.28634051884682	2.00787738966662	1.44302301708847	-2.0017269975848	0.00905499103349725	0.10140801097066
Merged-chr5-117149509-1	chr5	117149409	117149609	+	633.0	f1_c57bl6.idr	intron (NM_001081308, intron 1 of 19)	intron (NM_001081308, intron 1 of 19)	15921.0	NM_183306	330177.0	Mm.24343	NM_183306	ENSMUSG00000061288	Taok3	2900006A08Rik|A130052D22|A430105I05Rik	TAO kinase 3	protein-coding	1.30458992132338	2.16088307348283	0.8271318598375	0.573515409224879	0.932207368561929	1.25656735023406	0.590158295519526	0.575807278484783	-1.88128084445882	0.210172329559167	0.69949048545273
Merged-chr8-111562035-4	chr8	111561926	111562126	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168623, intron 1 of 4)	intron (NM_001168623, intron 1 of 4)	23683.0	NM_001168623	170737.0	Mm.271578	NM_133206	ENSMUSG00000033545	Znrf1	B830022L21Rik|Rnf42|Zrfp1|nin283	zinc and ring finger 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-39417804-4	chr10	39417720	39417920	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122892, intron 2 of 12)	intron (NM_001122892, intron 2 of 12)	48021.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28515280-2	chr17	28515180	28515380	+	616.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	IMPB_01|Satellite|Satellite	-15581.0	NM_026290	67645.0	Mm.46170	NM_026290	ENSMUSG00000024223	Armc12	4930511I11Rik|AV041658	armadillo repeat containing 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-33982390-2	chr17	33982316	33982516	+	776.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033305, exon 1 of 1)	non-coding (NR_033305, exon 1 of 1)	924.0	NR_033305	433100.0	Mm.380381	NM_001013793		AA388235	-	expressed sequence AA388235	ncRNA	4.80743039438299	5.1274645917797	3.61431905720916	4.88878572841543	3.06105836944609	3.10455566156197	1.71276339493303	3.00816364375725	-2.64471845738923	2.63160988381892e-06	0.000147542314888128
Merged-chr1-135266084-4	chr1	135265992	135266192	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159624, intron 7 of 9)	intron (NM_001159624, intron 7 of 9)	-7620.0	NM_007921	13710.0	Mm.441439	NM_007921	ENSMUSG00000003051	Elf3	ESE-1|ESX|jen	E74-like factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-20898618-4	chr9	20898525	20898725	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016876)	promoter-TSS (NM_016876)	-35.0	NM_016876	53356.0	Mm.427309	NM_016876	ENSMUSG00000070319	Eif3g	44kDa|D0Jmb4|Eif3s4|TU-189B2|eIF3-p44|p44	eukaryotic translation initiation factor 3, subunit G	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-86894402-4	chr11	86894282	86894482	+	848.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-86722.0	NM_026191	67487.0	Mm.260627	NM_026191	ENSMUSG00000018425	Dhx40	2410016C14Rik|ARG147|DDX40|PAD	DEAH (Asp-Glu-Ala-His) box polypeptide 40	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80026644-2	chr7	80026544	80026744	+	866.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_175433, intron 1 of 4)	intron (NM_175433, intron 1 of 4)	416.0	NM_175433	209225.0	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-25536642-2	chr15	25536542	25536742	+	705.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-85908.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-36235092-4	chr2	36234991	36235191	+	960.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008969, intron 2 of 10)	intron (NM_008969, intron 2 of 10)	4665.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-47610508-1	chr10	47610408	47610608	+	548.0	f1_balb.idr	Intergenic	RLTR10B2|LTR|ERVK	1365759.0	NR_028276	108637.0		NR_028276	ENSMUSG00000096263	Snord14c	Gm23107|Rnu14|U14	small nucleolar RNA, C/D box 14C	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-180105959-2	chr2	180105859	180106059	+	647.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1552.0	NM_133849	99296.0	Mm.285360	NM_133849	ENSMUSG00000039059	Hrh3	AW049250|H3R|HH3R	histamine receptor H3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-89889235-4	chr13	89889097	89889297	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028012, intron 7 of 7)	intron (NM_028012, intron 7 of 7)	-146685.0	NM_001134475	13003.0	Mm.158700	NM_019389	ENSMUSG00000021614	Vcan	5430420N07Rik|9430051N09|Cspg2|DPEAAE|NG2|PG-M|PG-M(V0)|PG-M(V1)|hdf	versican	protein-coding	1.92458944788567	1.67207439006734	2.18940146898022	1.42541160995448	1.21837498759171	0.915400689235823	0.896885324751779	1.09942829895032	-3.15603905034191	0.0174229200268082	0.161879345236173
Merged-chr17-84083625-6	chr17	84083492	84083692	+	982.055542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045458, intron 2 of 5)	intron (NR_045458, intron 2 of 5)	4932.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-121352408-4	chr9	121352316	121352516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152160, intron 1 of 17)	intron (NR_152160, intron 1 of 17)	-14542.0	NM_001357973	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	3.96237769076093	3.62962918827461	5.19873707127865	3.48669182886491	4.53889305893484	1.9228374124566	4.4672296428683	4.07886504381613	-0.273952934514807	0.786090656707822	0.998431161219273
Merged-chr10-21524235-2	chr10	21524135	21524335	+	874.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68910.0	NR_027968	67692.0	Mm.54306	NM_183266	ENSMUSG00000050844	1700020N01Rik	-	RIKEN cDNA 1700020N01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-10998925-3	chr4	10998821	10999021	+	669.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175175, intron 1 of 1)	intron (NM_175175, intron 1 of 1)	8698.0	NM_175175	71801.0	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	0.64149221407804	0.308993054511321	0.13354035311964	0.117548649951651	0.0948061314378174	-0.0299305277622686	-0.0347689084381575	-0.0388860323932559	-3.02501142033102	0.139510728945052	1
Merged-chr12-14160437-1	chr12	14160337	14160537	+	556.0	f1_c57bl6.idr	Intergenic	Intergenic	-8399.0	NM_029007	105005.0	Mm.227253	NM_029007	ENSMUSG00000020607	Fam84a	2310003N02Rik|4731402F03Rik|AW125753|Nse1	family with sequence similarity 84, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-34327836-2	chr7	34327736	34327936	+	544.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur2|SINE|Alu	-42227.0	NM_172741	233103.0	Mm.491097	NM_172741	ENSMUSG00000066571	4931406P16Rik	AA553327|mKIAA0355	RIKEN cDNA 4931406P16 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-80724988-3	chr12	80724926	80725126	+	807.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001177503)	TTS (NM_001177503)	32425.0	NM_001177503	217682.0	Mm.154541	NM_001177503	ENSMUSG00000066438	Plekhd1	3830431G21Rik	pleckstrin homology domain containing, family D (with coiled-coil domains) member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153216409-2	chr2	153216309	153216509	+	719.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9032.0	NM_198617	241732.0	Mm.277243	NM_198617	ENSMUSG00000074671	Tspyl3	AW212607|Gm36	TSPY-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129598151-2	chr2	129598051	129598251	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355160, intron 1 of 7)	intron (NM_001355160, intron 1 of 7)	2689.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98606913-2	chr11	98606813	98607013	+	656.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8622.0	NM_001195544	192852.0	Mm.342821	NM_001195544	ENSMUSG00000086545	Lrrc3c	Gm12	leucine rich repeat containing 3C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-35043133-3	chr9	35043037	35043237	+	803.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER47B|DNA|TcMar-Tigger	-73591.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-143511739-3	chr5	143511649	143511849	+	970.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347530, intron 3 of 6)	intron (NM_001347530, intron 3 of 6)	16244.0	NM_009007	19353.0	Mm.292510	NM_009007	ENSMUSG00000001847	Rac1	AL023026|D5Ertd559e	Rac family small GTPase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124736566-2	chr6	124736466	124736666	+	559.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077705, intron 1 of 15)	intron (NM_001077705, intron 1 of 15)	2143.0	NM_001077705	15170.0	Mm.271799	NM_013545	ENSMUSG00000004266	Ptpn6	70Z-SHP|Hcph|PTPTY-42|Ptp1C|SH-PTP1|SHP-1|hcp|me	protein tyrosine phosphatase, non-receptor type 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-94198963-4	chr11	94198864	94199064	+	894.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12490.0	NM_009427	22057.0	Mm.259673	NM_009427	ENSMUSG00000037573	Tob1	Tob|Trob	transducer of ErbB-2.1	protein-coding	2.27472205187091	2.7807504289033	1.1069718496116	3.0702326362059	1.49802991601651	1.15346958631209	2.86294836615686	1.0814475835614	-1.23623158785759	0.497888249009465	0.936897994490085
Merged-chr7-58731030-3	chr7	58730925	58731125	+	906.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009728, intron 1 of 20)	intron (NM_009728, intron 1 of 20)	72823.0	NM_009728	11982.0	Mm.135129	NM_009728	ENSMUSG00000025324	Atp10a	Atp10c|pfatp	ATPase, class V, type 10A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-167283855-2	chr1	167283755	167283955	+	852.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030724, intron 1 of 6)	CpG	1272.0	NM_030724	80914.0	Mm.280895	NM_030724	ENSMUSG00000026558	Uck2	AA407809|AI481316|AU018180|AU020720|TSA903|UK|UMK|Umpk	uridine-cytidine kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-89173468-2	chr15	89173368	89173568	+	902.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_138749, intron 1 of 37)	CpG	483.0	NM_001159521	140570.0	Mm.267514	NM_138749	ENSMUSG00000036606	Plxnb2	Debt|plexin-B2	plexin B2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-11777009-4	chr11	11776900	11777100	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31962.0	NM_021891	60530.0	Mm.236114	NM_021891	ENSMUSG00000035455	Fignl1	-	fidgetin-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-19850048-2	chr10	19849948	19850148	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029529, intron 1 of 1)	CpG	1411.0	NM_029529	76157.0	Mm.74324	NM_029529	ENSMUSG00000050473	Slc35d3	6230421J19Rik|Frcl1	solute carrier family 35, member D3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-11818854-3	chr19	11818769	11818969	+	975.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_153434, exon 1 of 12)	non-coding (NR_153434, exon 1 of 12)	534.0	NM_001286543	20908.0	Mm.272264	NM_011502	ENSMUSG00000041488	Stx3	Syn-3	syntaxin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-21804531-3	chr10	21804439	21804639	+	810.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-77645.0	NM_001161845	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114924358-2	chr11	114924258	114924458	+	845.166626	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_199221, exon 4 of 4)	3' UTR (NM_199221, exon 4 of 4)	10028.0	NM_001347651	217304.0	Mm.185355	NM_199221	ENSMUSG00000063193	Cd300lb	CLM-7|Clm7|Gm253|LMIR5	CD300 molecule like family member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-173877357-4	chr1	173877252	173877452	+	810.450012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170853, intron 2 of 9)	intron (NM_001170853, intron 2 of 9)	2835.0	NM_001170853	100040462.0	Mm.463437	NM_001170853	ENSMUSG00000090272	Mndal	Gm2785|Ifi212	myeloid nuclear differentiation antigen like	protein-coding	-1.53362919331644	-1.50201671710775	-1.51157659084044	-1.08120497225282	-1.53141005593807	-1.49994505258991	-1.50941244497383	-1.51802371459528	-1.94474658522739	0.577200604274218	1
Merged-chr3-28807580-2	chr3	28807480	28807680	+	557.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_026517)	TTS (NM_026517)	2072.0	NM_026517	68028.0	Mm.21724	NM_026517	ENSMUSG00000039221	Rpl22l1	3110001N18Rik|AU041196	ribosomal protein L22 like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-119503333-2	chr1	119503233	119503433	+	781.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_022327, intron 1 of 4)	ID_B1|SINE|B4	1449.0	NM_022327	64143.0	Mm.27832	NM_022327	ENSMUSG00000004451	Ralb	5730472O18Rik	v-ral simian leukemia viral oncogene B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34572004-2	chr17	34571880	34572080	+	892.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_010929, intron 9 of 29)	intron (NM_010929, intron 9 of 29)	7685.0	NM_010929	18132.0	Mm.173813	NM_010929	ENSMUSG00000015468	Notch4	Int-3|Int3|N4	notch 4	protein-coding	-1.09872745961213	-1.07699347173527	-1.08829787554085	-0.558152922054368	-1.09823656754642	-1.07454376027315	-0.909664618057294	-1.09507564564359	-1.63765106953622	0.612363938142247	1
Merged-chr8-70041720-2	chr8	70041616	70041816	+	893.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_028993, intron 1 of 18)	intron (NM_028993, intron 1 of 18)	1018.0	NM_001167939	74549.0	Mm.269061	NM_028993	ENSMUSG00000031858	Mau2	9130404D08Rik|A930019L04Rik|C77863|C79014|Mau-2|mKIAA0892	MAU2 sister chromatid cohesion factor	protein-coding	0.215396180494151	0.106359003221454	0.597772361695183	0.0990179580826464	0.42775490227633	0.107303572213613	0.607247977718108	0.0995713472154118	0.448557691200964	0.829336524784659	1
Merged-chr2-118905930-3	chr2	118905828	118906028	+	804.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045523, intron 1 of 6)	intron (NM_001045523, intron 1 of 6)	4313.0	NM_001045523	228536.0	Mm.330487	NM_001045523	ENSMUSG00000040007	Bahd1	AL022997|AW541238|Gm117|mKIAA0945	bromo adjacent homology domain containing 1	protein-coding	1.42199867647662	2.30172726633307	1.87096406327834	2.91824814412419	1.267033752452	0.9145878761692	0.88600703351357	0.860453830317368	-4.21786495390435	0.00216085603050188	0.0353214586566234
Merged-chr17-4742502-4	chr17	4742392	4742592	+	985.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	107512.0	NR_130984	75117.0	Mm.429393	NR_130984		4930517M08Rik	-	RIKEN cDNA 4930517M08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99102703-4	chr7	99102622	99102822	+	927.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 3 of 14)	RMER17C|LTR|ERVK	38422.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	2.6106200934891	2.4366554895955	0.854165403245204	0.832467422234914	1.98242660429906	0.887013890813642	1.54631730759114	0.836319306773246	-1.41188671111093	0.543008224485541	0.955286497618918
Merged-chr17-20218254-2	chr17	20218154	20218354	+	705.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001104567, intron 5 of 5)	Lx|LINE|L1	16618.0	NM_001104567	627743.0	Mm.379363	NM_001104567	ENSMUSG00000091670	Vmn2r105	EG627743	vomeronasal 2, receptor 105	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-100161248-2	chr3	100161141	100161341	+	816.041626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355657, intron 1 of 26)	intron (NM_001355657, intron 1 of 26)	1166.0	NM_175552	269470.0	Mm.24591	NM_175552	ENSMUSG00000033285	Wdr3	AW546279|D030020G18Rik	WD repeat domain 3	protein-coding	2.78505604517429	3.02503233497607	2.81817456827898	3.3178639110034	1.72627277726678	3.40343362629682	2.84039599760097	2.63903002630632	-0.403945386317868	0.581183567510323	0.966599221005409
Merged-chr15-73720949-4	chr15	73720869	73721069	+	906.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2176.0	NM_001166390	19245.0	Mm.390807	NM_008975	ENSMUSG00000059895	Ptp4a3	AV088979|Prl-3|pPtp4a3	protein tyrosine phosphatase 4a3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127746050-4	chr10	127745938	127746138	+	944.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_198035, exon 2 of 2)	3' UTR (NM_198035, exon 2 of 2)	5760.0	NM_007412	11536.0	Mm.2857	NM_007412	ENSMUSG00000058396	Gpr182	AM-R|Admr|G10-D|Gpcr17|Gpcr22|MB10|NOW	G protein-coupled receptor 182	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27746829-2	chr2	27746729	27746929	+	930.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290481, intron 4 of 9)	intron (NM_001290481, intron 4 of 9)	36246.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-8661992-4	chr8	8661891	8662091	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1218.0	NM_010111	13642.0	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-84038344-4	chr12	84038247	84038447	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134247)	promoter-TSS (NM_134247)	-32.0	NM_134247	171282.0	Mm.482217	NM_134247	ENSMUSG00000052392	Acot4	B430212I04Rik|PTE-Ib|Pte1b|Pte2b	acyl-CoA thioesterase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3737788-1	chr12	3737688	3737888	+	900.0	f1_c57bl6.idr	intron (NM_001162465, intron 12 of 17)	B3A|SINE|B2	-69192.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0.629104488515936	0.626456831094385	0.248230886064621	0.242599116048502	1.13494156027551	0.634435961189705	0.24983657374267	0.243584681108057	1.05298406229763	0.583668923632561	1
Merged-chr17-7896252-2	chr17	7896152	7896352	+	847.3333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29748.0	NM_145968	72536.0	Mm.119680	NM_145968	ENSMUSG00000033450	Tagap	2610315E15Rik|TRD|Tcd-1|Tcd1|Tcd1a|tcs-1|tcs1	T cell activation Rho GTPase activating protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35865111-4	chr17	35865093	35865293	+	771.825012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146711)	promoter-TSS (NM_001146711)	-402.0	NM_001146711	76448.0	Mm.359982	NM_175242	ENSMUSG00000034595	Ppp1r18	2310014H01Rik|AA407849|AI450394	protein phosphatase 1, regulatory subunit 18	protein-coding	-1.01650287647704	-1.25429457361964	-1.26440096519751	-1.27270265614888	-1.13563522456773	-1.093084798601	-1.26211309967008	-1.27121665743773	0.110482513424362	0.972184676278774	1
Merged-chr4-155221964-8	chr4	155221936	155222136	+	822.473206	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011385, exon 1 of 7)	exon (NM_011385, exon 1 of 7)	499.0	NM_011385	20481.0	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	2.16796117425814	2.81450365514318	2.63763737911524	1.16749765201464	2.08635168651993	2.23106118644669	1.20018229625984	1.62709714902373	-1.16210313626599	0.270939085425552	0.774352775182494
Merged-chr15-62252314-3	chr15	62252207	62252407	+	681.25	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132747, intron 4 of 4)	intron (NR_132747, intron 4 of 4)	-32856.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	-1.43172712806865	-1.3992492906874	-1.40907085678131	-1.41713858359971	-0.932192548427885	-1.39712091634321	-1.40684746950024	-1.41569446435649	2.19283191591698	0.528233640655333	1
Merged-chr13-43560811-2	chr13	43560711	43560911	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081059)	promoter-TSS (NM_001081059)	-620.0	NM_001081059	76137.0	Mm.426290	NM_001081059	ENSMUSG00000021371	Mcur1	6230416A05Rik|AU015498|AV136929|AW554392|C88263|Ccdc90a	mitochondrial calcium uniporter regulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-85669198-2	chr15	85669098	85669298	+	658.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34575.0	NR_110483	102800312.0	Mm.33117	NR_110483		Lncppara	Lincppara|Mirlet7bhg|linc-Ppara	long noncoding RNA near Ppara	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191835056-4	chr1	191834953	191835153	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13580.0	NM_010892	18005.0	Mm.33773	NM_010892	ENSMUSG00000026622	Nek2	AA617254|C77054	NIMA (never in mitosis gene a)-related expressed kinase 2	protein-coding	4.17308644252626	3.61441809680694	3.74689562116857	4.92624970045499	3.92067586317941	3.82335736948341	2.37827761235194	4.1099790029974	-0.711409425499522	0.198472815028524	0.681923492185632
Merged-chr2-167960455-4	chr2	167960355	167960555	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011201, intron 1 of 8)	intron (NM_011201, intron 1 of 8)	28128.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-135699600-6	chr1	135699522	135699722	+	948.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20441.0	NM_001360782	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-127376285-1	chr2	127376185	127376385	+	698.0	f0_c57.idr	Intergenic	Intergenic	12999.0	NM_009633	11552.0	Mm.347390	NM_009633	ENSMUSG00000058620	Adra2b	Adra-2b|[a]2B|a2b-AR|alpha2-C2|alpha2B	adrenergic receptor, alpha 2b	protein-coding	1.91565837726731	2.02034115551642	2.29118423001203	2.01872230733505	1.37318058932636	2.48820339098321	1.82411624339994	1.42676150637933	-0.536677847696014	0.589055648040471	0.968865306825047
Merged-chr3-101594458-4	chr3	101594341	101594541	+	909.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144900, intron 2 of 22)	intron (NM_144900, intron 2 of 22)	10266.0	NM_144900	11928.0	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-65096253-3	chr5	65096156	65096356	+	968.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER4B|LTR|ERVK	-11312.0	NM_001347355	71778.0	Mm.10281	NM_175174	ENSMUSG00000054920	Klhl5	1300013C10Rik	kelch-like 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-65418355-4	chr3	65418263	65418463	+	947.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25810.0	NM_026155	67437.0	Mm.232728	NM_026155	ENSMUSG00000027828	Ssr3	0610038P07Rik|AL022999|AU022074|AW553833|TRAPG	signal sequence receptor, gamma	protein-coding	1.82968239035575	2.18407640497037	1.1174126244128	1.81063378944726	2.35350984436599	2.30879219318028	1.5661165387933	1.10134884132492	0.409813143594388	0.717840142979588	0.998431161219273
Merged-chr2-125122394-4	chr2	125122299	125122499	+	831.81665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162418, intron 1 of 14)	intron (NM_001162418, intron 1 of 14)	1261.0	NM_001162417	17876.0	Mm.18535	NM_010852	ENSMUSG00000027201	Myef2	9430071B01|mKIAA1341	myelin basic protein expression factor 2, repressor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-18056696-1	chr10	18056596	18056796	+	545.0	f1_c57bl6.idr	intron (NM_009048, intron 1 of 19)	intron (NM_009048, intron 1 of 19)	756.0	NM_001111065	19707.0	Mm.4479	NM_009048	ENSMUSG00000019854	Reps1	BB161292	RalBP1 associated Eps domain containing protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-84650766-4	chr2	84650668	84650868	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007615)	promoter-TSS (NM_007615)	-28.0	NM_001355066	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-84069523-3	chr3	84069427	84069627	+	994.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29366.0	NM_172681	229473.0	Mm.28838	NM_172681	ENSMUSG00000033767	Tmem131l	D930015E06Rik|Kiaa0922|mKIAA0922	transmembrane 131 like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-137857339-3	chr4	137857267	137857467	+	959.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-4870.0	NM_199307	230857.0	Mm.401062	NM_199307	ENSMUSG00000057530	Ece1	AW322500|ECE-1|ECE-1a|ECE-1b|ECE-1d	endothelin converting enzyme 1	protein-coding	2.49462980015443	3.48306481470761	2.85519563517616	3.18830889816154	3.64319534693243	4.05179318750949	2.59199418479746	3.29023804657087	0.723952483741032	0.252564762711816	0.750119406264342
Merged-chr7-44886040-2	chr7	44885940	44886140	+	654.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001331206, intron 4 of 16)	intron (NM_001331206, intron 4 of 16)	6384.0	NM_001331208	75613.0	Mm.157778	NM_029365	ENSMUSG00000002968	Med25	2610034E13Rik|2610529E18Rik|ESTM2	mediator complex subunit 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-164879913-4	chr2	164879826	164880026	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146129, intron 1 of 16)	CpG	558.0	NM_146129	228866.0	Mm.241134	NM_146129	ENSMUSG00000039849	Pcif1	2310022K11Rik|C20orf67|F730014I05Rik	PDX1 C-terminal inhibiting factor 1	protein-coding	5.98337836247764	5.92245403654196	4.52689548063322	6.30451039027451	5.97538199540336	5.63377030703243	5.04994275688278	6.22354680982464	-0.0410695736402151	0.906066226189053	0.998431161219273
Merged-chr12-117728878-1	chr12	117728778	117728978	+	612.0	f0_balb.idr	intron (NM_175930, intron 21 of 27)	intron (NM_175930, intron 21 of 27)	-114983.0	NM_146040	217946.0	Mm.281149	NM_146040	ENSMUSG00000021175	Cdca7l	BC006933|JPO2	cell division cycle associated 7 like	protein-coding	0.747139044491948	0.494076751060059	0.956907176859501	1.13108580365453	0.470193590801997	1.13774182098115	0.832009675116277	0.480454304847928	-0.477885705841779	0.774585438636661	1
Merged-chr1-43264642-4	chr1	43264547	43264747	+	856.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-67886.0	NM_001289533	14200.0	Mm.6799	NM_010212	ENSMUSG00000008136	Fhl2	FHL-2|SLIM-3|SLIM3	four and a half LIM domains 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43322714-1	chr4	43322614	43322814	+	540.0	f0_balb.idr	intron (NM_177195, intron 11 of 28)	intron (NM_177195, intron 11 of 28)	55555.0	NM_177195	320571.0	Mm.74465	NM_177195	ENSMUSG00000028457	Atp8b5	4930417M19Rik|Feta	ATPase, class I, type 8B, member 5	protein-coding	1.74656895719574	1.22459012383576	1.17990883551756	2.72080907076678	3.62631176120733	2.35800363573022	3.07191231698315	1.4380870546381	1.91872983249878	0.0600184999610106	0.362954618211797
Merged-chr3-61268955-3	chr3	61268875	61269075	+	781.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-95532.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	-1.32440223303897	-1.29339468673833	-0.717877708899544	-1.31276353204239	-1.32392690786997	-1.29109028300231	-1.30162128075409	-1.31119997543009	-2.49510383040271	0.470258445164311	1
Merged-chr2-90631463-2	chr2	90631363	90631563	+	676.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	-45752.0	NM_021512	59015.0	Mm.24532	NM_021512	ENSMUSG00000051329	Nup160	160kDa|2810011M03Rik|AA414952|AU020188|Gtl-13|Gtl1-13|Gtl13|mKIAA0197	nucleoporin 160	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-52571016-4	chr18	52570915	52571115	+	992.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41148.0	NM_001286182	16948.0	Mm.172	NM_010728	ENSMUSG00000024529	Lox	AI893619|TSC-160|rrg	lysyl oxidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-93230344-1	chr13	93230244	93230444	+	603.0	f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-37927.0	NM_001361537	100715.0	Mm.242865	NM_133905	ENSMUSG00000042167	Papd4	8030446C20Rik|AI649009|GLD-2|Gld2	PAP associated domain containing 4	protein-coding	1.758357553525	1.85375149034588	1.65586325400861	2.21553954297967	1.06082536510681	1.36293661954089	1.80458324626096	1.74886537776114	-1.13284491767057	0.304680212083324	0.806210138838192
Merged-chr3-38433722-4	chr3	38433605	38433805	+	958.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51111.0	NM_001167883	99696.0	Mm.290937	NM_001033198	ENSMUSG00000044864	Ankrd50	AI662170|E430012K20Rik|mKIAA1223|mKIAA3019	ankyrin repeat domain 50	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-128724945-4	chr7	128724830	128725030	+	819.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145955, intron 2 of 15)	intron (NM_145955, intron 2 of 15)	15499.0	NM_145955	210711.0	Mm.58882	NM_145955	ENSMUSG00000048170	Mcmbp	1110007A13Rik|AU017382|BC025641|MCM-BP	minichromosome maintenance complex binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-42676155-2	chr15	42676055	42676255	+	998.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286062, intron 1 of 8)	intron (NM_001286062, intron 1 of 8)	822.0	NM_001286062	11600.0	Mm.309336	NM_009640	ENSMUSG00000022309	Angpt1	1110046O21Rik|Ang-1|Ang1	angiopoietin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56010926-4	chr17	56010808	56011008	+	954.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026530, intron 3 of 12)	intron (NM_026530, intron 3 of 12)	1707.0	NM_026530	68047.0	Mm.358710	NM_026530	ENSMUSG00000003199	Mpnd	E130307M08Rik	MPN domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-82241270-4	chr10	82241141	82241341	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001105557)	promoter-TSS (NM_001105557)	34.0	NM_001105557	237411.0		NM_172789	ENSMUSG00000062931	Zfp938	B230315N10Rik	zinc finger protein 938	protein-coding	1.93840673779495	2.3344614510473	2.81923513296501	3.22400047056556	1.95424424007201	1.99712693966167	2.53549542816669	2.75421061185328	-0.658565533582872	0.424541251104697	0.901293602726532
Merged-chr18-82479891-4	chr18	82479787	82479987	+	771.591675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025245, intron 1 of 3)	intron (NM_001025245, intron 1 of 3)	4764.0	NM_010777	17196.0	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-36531687-4	chr13	36531611	36531811	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039189, intron 5 of 5)	MIRc|SINE|MIR	202766.0	NM_153529	68404.0	Mm.232930	NM_153529	ENSMUSG00000039114	Nrn1	0710008J23Rik|Cpg15|Nrn	neuritin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-22424203-4	chr17	22424094	22424294	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001331195)	promoter-TSS (NM_001331195)	-8.0	NM_001331197	74149.0	Mm.30767	NM_198003	ENSMUSG00000071266	Zfp946	1300003B13Rik	zinc finger protein 946	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-192761652-1	chr1	192761552	192761752	+	846.0	f1_c57bl6.idr	intron (NM_144881, intron 1 of 11)	Lx5b|LINE|L1	9567.0	NM_144881	226861.0	Mm.145857	NM_144881	ENSMUSG00000037375	Hhat	2810432O22Rik|AI462858|AP-2CRE|Skn|Tg(TFAP2A-cre)1Will	hedgehog acyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-142737990-2	chr7	142737890	142738090	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58264.0	NM_001185084	16334.0	Mm.4946	NM_008387	ENSMUSG00000000215	Ins2	AA986540|Ins-2|InsII|Mody|Mody4	insulin II	protein-coding	0.455001364449563	0.67550634834204	0.765768119236612	0.483137636071166	0.865727983071962	0.339366023665614	0.649673207258378	0.327945231380128	-0.174114851424444	0.918724696834065	1
Merged-chr15-68158737-1	chr15	68158637	68158837	+	867.0	f1_balb.idr	intron (NM_198644, intron 10 of 15)	intron (NM_198644, intron 10 of 15)	100119.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	0.316968401594867	1.97367445906143	0.117913238585781	0.105511192005293	0.0872744906110547	1.03195909344874	0.121387207012193	0.107706612174429	-1.85064869227523	0.576225498084744	0.965286201225318
Merged-chr3-38202053-4	chr3	38201954	38202154	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6065.0	NR_040541	71342.0	Mm.410782	NR_040541	ENSMUSG00000106002	5430434I15Rik	-	RIKEN cDNA 5430434I15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-70476340-6	chr12	70476188	70476388	+	799.777771	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_037248, intron 2 of 4)	intron (NR_037248, intron 2 of 4)	23134.0	NM_028339	72736.0	Mm.204670	NM_028339	ENSMUSG00000021072	Tmx1	2810425A04Rik|AI465319|Txndc1	thioredoxin-related transmembrane protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-20945536-4	chr5	20945441	20945641	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080977, intron 1 of 7)	MLT1B|LTR|ERVL-MaLR	-5448.0	NR_030699	320770.0	Mm.491217	NR_030699	ENSMUSG00000101013	A630072M18Rik	Aptr	RIKEN cDNA A630072M18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141911497-1	chr7	141911397	141911597	+	625.5	f0_balb.idr	Intergenic	Intergenic	-9036.0	NM_001347562	54473.0	Mm.103551	NM_023764	ENSMUSG00000025139	Tollip	4930403G24Rik|4931428G15Rik	toll interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118450390-2	chr11	118450290	118450490	+	718.166626	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001204129, exon 4 of 4)	3' UTR (NM_001204129, exon 4 of 4)	4605.0	NR_045902	100126224.0	Mm.441989	NR_045902	ENSMUSG00000086514	Gm11747	-	predicted gene 11747	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-100790346-2	chr12	100790246	100790446	+	762.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361017, intron 3 of 14)	intron (NM_001361017, intron 3 of 14)	11289.0	NM_145448	217830.0	Mm.218590	NM_145448	ENSMUSG00000021185	Dglucy	9030617O03Rik	D-glutamate cyclase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-98778081-2	chr13	98777981	98778181	+	987.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_172591, intron 6 of 25)	intron (NM_172591, intron 6 of 25)	37368.0	NM_172591	218503.0	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-132113845-3	chr2	132113731	132113931	+	915.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355430, intron 1 of 15)	intron (NM_001355430, intron 1 of 15)	31277.0	NM_001355431	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-27298459-4	chr3	27298362	27298562	+	935.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18615.0	NM_009425	22035.0	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-19641132-2	chr2	19641032	19641232	+	604.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MERV1_LTR|LTR|ERV1	16765.0	NR_033642	100041244.0	Mm.407223	NR_033642		Gm3230	-	predicted gene 3230	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-51476572-4	chr1	51476497	51476697	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028696, intron 2 of 5)	intron (NM_028696, intron 2 of 5)	1802.0	NM_001310548	109019.0	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-182378577-4	chr1	182378487	182378687	+	993.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30580.0	NM_173378	209456.0	Mm.287450	NM_173378	ENSMUSG00000026510	Trp53bp2	53BP2|AI746547|ASPP2|PPP1R13A|Tp53bp2|X98550	transformation related protein 53 binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-83643631-2	chr17	83643531	83643731	+	548.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11736.0	NM_153512	225030.0	Mm.223506	NM_153512	ENSMUSG00000045053	Kcng3	KV6.3|Kv10.1a|Kv10.1b	potassium voltage-gated channel, subfamily G, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-55114164-4	chr15	55114096	55114296	+	705.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045093)	promoter-TSS (NR_045093)	-614.0	NR_045093	100503794.0	Mm.360519	NR_045093	ENSMUSG00000053749	Gm9920	-	predicted gene 9920	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-79029447-4	chr8	79029428	79029628	+	892.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001294279, intron 1 of 14)	CpG	1091.0	NM_178267	622675.0	Mm.48724	NM_178267	ENSMUSG00000071064	Zfp827	2810449M09Rik|D630040G17Rik|Znf827	zinc finger protein 827	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-42366298-2	chr12	42366198	42366398	+	729.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	667919.0	NR_148724	102636207.0		NR_148724		Gm33340	Gm40882	predicted gene, 33340	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76672444-1	chr15	76672344	76672544	+	738.0	f1_balb.idr	intron (NR_152559, intron 1 of 8)	intron (NR_152559, intron 1 of 8)	801.0	NM_033371	73062.0	Mm.322901	NM_033371	ENSMUSG00000033819	Ppp1r16a	2900084E10Rik|Mypt3|R75527	protein phosphatase 1, regulatory (inhibitor) subunit 16A	protein-coding	0.216715655280623	-0.0492651286011771	-0.0552558081081123	-0.0598967993210761	0.443887178846792	0.822539339135756	-0.0539321694205246	-0.0590848014256242	2.52471837990756	0.265786487098218	1
Merged-chr5-109996441-4	chr5	109996353	109996553	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145563)	promoter-TSS (NM_145563)	-74.0	NM_145563	69504.0	Mm.441438	NM_145563	ENSMUSG00000066613	Zfp932	2310001H12Rik|Znf431	zinc finger protein 932	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-137953602-4	chr4	137953568	137953768	+	892.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199307, intron 15 of 19)	intron (NM_199307, intron 15 of 19)	-39788.0	NM_001256198	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	3.72750289722217	2.47269838554774	2.55365265801043	3.39857063704222	3.75597603456712	2.82057354806342	3.36477315937718	2.99043680095921	0.205860557322681	0.753403378769283	0.998431161219273
Merged-chr11-101972935-4	chr11	101972837	101973037	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028207, exon 3 of 3)	3' UTR (NM_028207, exon 3 of 3)	-5922.0	NM_024449	74499.0	Mm.265602	NM_024449	ENSMUSG00000001494	Sost	5430411E23Rik	sclerostin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-49846131-4	chr11	49846017	49846217	+	884.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163672)	promoter-TSS (NM_001163672)	-634.0	NM_001163671	26420.0	Mm.68933	NM_016961	ENSMUSG00000020366	Mapk9	AI851083|JNK2|Prkm9|p54aSAPK	mitogen-activated protein kinase 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139252613-4	chr5	139252523	139252723	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163316)	promoter-TSS (NM_001163316)	299.0	NM_026269	67604.0	Mm.270137	NM_026269	ENSMUSG00000025858	Get4	1110007L15Rik|AW412535|Cee	golgi to ER traffic protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-30718775-2	chr3	30718675	30718875	+	848.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18932.0	NM_001309233	320352.0	Mm.229153	NM_001309233	ENSMUSG00000074653	Lrrc31	E230002P03Rik	leucine rich repeat containing 31	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-84590052-2	chr6	84589952	84590152	+	770.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175475, intron 1 of 6)	intron (NM_175475, intron 1 of 6)	3758.0	NM_175475	232174.0	Mm.255246	NM_175475	ENSMUSG00000063415	Cyp26b1	CP26|P450RAI-2	cytochrome P450, family 26, subfamily b, polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-37488548-2	chr1	37488448	37488648	+	773.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_024017)	promoter-TSS (NR_024017)	57.0	NR_024017	77633.0	Mm.483177	NR_024017	ENSMUSG00000103948	4930594C11Rik	-	G1 to S phase transition pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91452186-6	chr16	91452109	91452309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12895.0	NR_077219	100503120.0	Mm.387130	NR_077219	ENSMUSG00000084866	A930006K02Rik	-	RIKEN cDNA A930006K02 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-104039157-4	chr9	104039053	104039253	+	892.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028721, intron 23 of 26)	intron (NM_028721, intron 23 of 26)	23968.0	NM_025692	66663.0	Mm.224935	NM_025692	ENSMUSG00000032557	Uba5	5730525G14Rik|AW240750|Ube1dc1	ubiquitin-like modifier activating enzyme 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-173771908-4	chr2	173771803	173772003	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019806, intron 3 of 5)	intron (NM_019806, intron 3 of 5)	34332.0	NM_019806	56491.0	Mm.260456	NM_019806	ENSMUSG00000054455	Vapb	AI225786|AI840687|AI848259|D2Abb2e|R75548|VAP33b|Vamp33b	vesicle-associated membrane protein, associated protein B and C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-25303708-2	chr15	25303608	25303808	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	110056.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-23830387-2	chr17	23830275	23830475	+	848.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR23|LTR|ERV1	-1266.0	NM_026305	67673.0	Mm.153758	NM_026305	ENSMUSG00000055839	Elob	0610040H15Rik|Tceb2	elongin B	protein-coding	0.143507339011907	0.211794023874686	0.867657115576868	0.314821422285785	0.147839400913267	0.0154912026734071	0.00971479788197566	0.0047773072533121	-3.19194126484894	0.108774816203238	1
Merged-chr7-19255918-2	chr7	19255818	19256018	+	754.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15936.0	NM_001282021	22323.0	Mm.9684	NM_009499	ENSMUSG00000030403	Vasp	-	vasodilator-stimulated phosphoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120598523-4	chr11	120598427	120598627	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011568)	promoter-TSS (NM_011568)	-5.0	NM_001038230	66156.0	Mm.21645	NM_025389	ENSMUSG00000025135	Anapc11	1110011I19Rik|R75218	anaphase promoting complex subunit 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-165765295-7	chr1	165765118	165765318	+	876.397949	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149310, intron 2 of 4)	B4|SINE|B4	1460.0	NM_011804	433375.0	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-41552834-4	chr13	41552705	41552905	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	-53411.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98662252-1	chr11	98662152	98662352	+	980.0	f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-2099.0	NM_021347	57911.0	Mm.458085	NM_021347	ENSMUSG00000017204	Gsdma	BB149167|Gsdm|Gsdm1|Gsdma1|H312E	gasdermin A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-61377860-3	chr18	61377756	61377956	+	944.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133249, intron 1 of 11)	intron (NM_133249, intron 1 of 11)	20044.0	NR_029879	723889.0		NR_029879	ENSMUSG00000105200	Mir378a	Mir378|Mirn378|mmu-mir-378|mmu-mir-378a	microRNA 378a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-124646792-3	chr4	124646703	124646903	+	737.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10843.0	NM_011141	18991.0	Mm.297371	NM_011141	ENSMUSG00000090125	Pou3f1	Oct-6|Oct6|Otf-6|Otf6|Scip|Test1|Tst-1|Tst1	POU domain, class 3, transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-20740308-3	chr18	20740219	20740419	+	746.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019737, intron 1 of 8)	intron (NM_019737, intron 1 of 8)	6085.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-148499820-3	chr5	148499765	148499965	+	766.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51808.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80741251-4	chr10	80741176	80741376	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007460, intron 1 of 30)	intron (NM_007460, intron 1 of 30)	999.0	NM_007460	11776.0	Mm.27082	NM_007460	ENSMUSG00000020198	Ap3d1	AA407035|Ap3d|Bolvr|mBLVR1|mh|mocha	adaptor-related protein complex 3, delta 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81284211-2	chr10	81284111	81284311	+	704.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001282095, intron 1 of 20)	PB1D7|SINE|Alu	1570.0	NM_001282096	27375.0	Mm.27984	NM_013769	ENSMUSG00000034917	Tjp3	-	tight junction protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-85762542-4	chr9	85762451	85762651	+	914.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13217.0	NM_175371	108837.0	Mm.22315	NM_175371	ENSMUSG00000035941	Ibtk	5430411K16Rik|AA409502|BTKI|mKIAA1417	inhibitor of Bruton agammaglobulinemia tyrosine kinase	protein-coding	2.03609605305137	2.40004200779895	2.41062210886901	1.91444057250126	1.55010479818785	2.41844894233083	1.22280584325135	1.6215023845671	-1.09690409719701	0.274475406168092	0.778541872770812
Merged-chr1-157412676-4	chr1	157412596	157412796	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177644)	promoter-TSS (NM_177644)	-101.0	NM_177644	226525.0	Mm.235028	NM_177644	ENSMUSG00000070565	Rasal2	6530401P13|A330066M24Rik	RAS protein activator like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-58016442-2	chr15	58016342	58016542	+	679.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	17852.0	NM_029418	75758.0	Mm.455792	NM_029418	ENSMUSG00000101892	9130401M01Rik	AI849328	RIKEN cDNA 9130401M01 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-45691066-5	chr14	45690948	45691148	+	734.616638	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32905.0	NM_001042719	114874.0	Mm.121918	NM_176845	ENSMUSG00000037697	Ddhd1	Mir5131|PA-PLA1	DDHD domain containing 1	protein-coding	3.2452607114735	2.95199683428176	2.61364494777351	3.28109088880203	3.0770551074317	2.21394365136924	2.634024257357	3.15133607347864	-0.402812394165687	0.552400029184767	0.959523840754686
Merged-chr5-76304888-4	chr5	76304766	76304966	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289826)	promoter-TSS (NM_001289826)	-10.0	NR_152171	665055.0	Mm.425276	NR_152171	ENSMUSG00000098449	Gm7467	EG665055	predicted gene 7467	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-58491064-2	chr3	58491003	58491203	+	629.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F1|SINE|Alu	-34718.0	NM_001005509	229317.0	Mm.21617	NM_001005509	ENSMUSG00000027810	Eif2a	D030048D22|D3Ertd194e	eukaryotic translation initiation factor 2A	protein-coding	1.71139709609732	2.1812602843654	1.8440147636633	1.46085719695184	2.52290223861731	1.74586803309767	2.12454191701287	2.16777047318023	0.963201159611293	0.312384121693386	0.813717909699793
Merged-chr2-51108873-3	chr2	51108769	51108969	+	854.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40242.0	NM_028810	74194.0	Mm.46497	NM_028810	ENSMUSG00000017144	Rnd3	2610017M01Rik|AI661404|Arhe|Rhoe	Rho family GTPase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-91180067-4	chr15	91179964	91180164	+	866.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011994, intron 3 of 9)	intron (NM_011994, intron 3 of 9)	11943.0	NM_011994	26874.0	Mm.295456	NM_011994	ENSMUSG00000055782	Abcd2	ABC39|ALDL1|ALDR|ALDRP	ATP-binding cassette, sub-family D (ALD), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120611150-2	chr11	120611050	120611250	+	936.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001347615, exon 11 of 13)	exon (NM_001347615, exon 11 of 13)	2673.0	NM_001347616	208990.0	Mm.29444	NM_153288	ENSMUSG00000044034	Npb	PPL7|mPPL7	neuropeptide B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-58274469-4	chr13	58274379	58274579	+	931.8875119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019832)	promoter-TSS (NM_019832)	-291.0	NM_019832	56278.0	Mm.296625	NM_019832	ENSMUSG00000021552	Gkap1	42kDa|4933400B15Rik|D13Ertd340e|Gkap42	G kinase anchoring protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-80034480-2	chr15	80034420	80034620	+	823.333374	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19712.0	NM_011057	18591.0	Mm.144089	NM_011057	ENSMUSG00000000489	Pdgfb	PDGF-B|Sis	platelet derived growth factor, B polypeptide	protein-coding	3.91088243030758	4.77188975804901	3.14141203276335	4.11115656280715	4.03303451777549	1.73765425975386	1.96097229073668	3.44523130303555	-1.39212812291085	0.209994104795987	0.69949048545273
Merged-chr2-166806140-1	chr2	166806040	166806240	+	1000.0	f0_balb.idr	intron (NM_001085495, intron 1 of 38)	intron (NM_001085495, intron 1 of 38)	559.0	NM_001085495	99371.0	Mm.297192	NM_001085495	ENSMUSG00000074582	Arfgef2	AI463430|AW493672|BIG2|E230011G24Rik	ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-148497410-1	chr5	148497310	148497510	+	786.0	f1_c57bl6.idr	Intergenic	(GGA)n|Simple_repeat|Simple_repeat	54263.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	2.50897488797389	2.09224044711276	1.39472315982243	2.5561003759302	2.60727614175845	2.83421762053196	2.19147632913706	2.12541654449061	0.553538367520943	0.532589563206601	0.952082138848632
Merged-chr10-117082283-2	chr10	117082183	117082383	+	945.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177798, intron 5 of 9)	intron (NM_177798, intron 5 of 9)	-18431.0	NM_007636	12461.0	Mm.247788	NM_007636	ENSMUSG00000034024	Cct2	Cctb	chaperonin containing Tcp1, subunit 2 (beta)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35972294-4	chr17	35972199	35972399	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_145487)	TTS (NM_145487)	-2549.0	NM_013854	224742.0	Mm.329022	NM_013854	ENSMUSG00000038762	Abcf1	AU041969|Abc50|D17Wsu166e|GCN20	ATP-binding cassette, sub-family F (GCN20), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89730697-4	chr3	89730579	89730779	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019655)	promoter-TSS (NM_019655)	-39.0	NM_001146296	56417.0	Mm.316628	NM_019655	ENSMUSG00000027951	Adar	AV242451|Adar1|Adar1p110|Adar1p150|DRADA|mZaADAR	adenosine deaminase, RNA-specific	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-90892908-2	chr5	90892808	90893008	+	818.75	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008176, exon 4 of 4)	3' UTR (NM_008176, exon 4 of 4)	1663.0	NM_008176	14825.0	Mm.21013	NM_008176	ENSMUSG00000029380	Cxcl1	Fsp|Gro1|KC|Mgsa|N51|Scyb1|gro	chemokine (C-X-C motif) ligand 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-14812402-3	chr18	14812300	14812500	+	614.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001100449, intron 6 of 14)	CT-rich|Low_complexity|Low_complexity	29155.0	NM_001100449	72504.0	Mm.312233	NM_001100449	ENSMUSG00000054321	Taf4b	105kDa|2610524B04Rik|4932409F03Rik|AW987595|TAFII-105|TAFII105|Taf2c2	TATA-box binding protein associated factor 4b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-112506010-1	chr13	112505910	112506110	+	1000.0	f1_balb.idr	3' UTR (NM_010560, exon 17 of 17)	3' UTR (NM_010560, exon 17 of 17)	41940.0	NM_010560	16195.0	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-31296686-4	chr17	31296603	31296803	+	879.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001242427, exon 1 of 20)	5' UTR (NM_001242427, exon 1 of 20)	479.0	NM_001242427	224674.0	Mm.311395	NM_153062	ENSMUSG00000024036	Slc37a1	G3PP	solute carrier family 37 (glycerol-3-phosphate transporter), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-122819016-2	chr10	122818916	122819116	+	674.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110218, intron 4 of 9)	intron (NM_001110218, intron 4 of 9)	139701.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94333518-4	chr10	94333415	94333615	+	921.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 1 of 4)	intron (NM_001359762, intron 1 of 4)	21566.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	4.4923043112771	4.46860293905158	4.38184436592564	4.46104389148198	4.79161180909434	4.2526803804757	3.18213409040366	4.48206741989874	-0.184419764171733	0.672036245090691	0.994297624374973
Merged-chr2-49349898-4	chr2	49349779	49349979	+	929.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-101607.0	NM_172663	227867.0	Mm.29167	NM_172663	ENSMUSG00000069495	Epc2	5830499L14|D2Ertd694e	enhancer of polycomb homolog 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-49971971-4	chr16	49971876	49972076	+	871.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8484.0	NR_045001	628951.0	Mm.428032	NR_045001		Gm6936	-	predicted gene 6936	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-138345130-4	chr4	138345058	138345258	+	985.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028176, intron 2 of 3)	intron (NM_028176, intron 2 of 3)	-18862.0	NM_026880	68943.0	Mm.18539	NM_026880	ENSMUSG00000028756	Pink1	1190006F07Rik|AU042772|AW557854|BRPK|mFLJ00387	PTEN induced putative kinase 1	protein-coding	3.32344924565003	3.26758852469663	2.24068035649754	2.82461502513243	4.24249317705837	4.30804466282392	3.28374995791198	3.66358093090173	1.46035628522822	0.0123110500907013	0.125987857765422
Merged-chr19-5925685-3	chr19	5925545	5925745	+	893.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026772)	promoter-TSS (NM_026772)	-829.0	NM_026772	104252.0	Mm.491103	NM_026772	ENSMUSG00000045664	Cdc42ep2	1110008C05Rik|Borg1|Cep2|D19Bwg1013e	CDC42 effector protein (Rho GTPase binding) 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-28986323-1	chr19	28986223	28986423	+	556.0	f0_balb.idr	Intergenic	MurERV4_19-int|LTR|ERVK	-4029.0	NM_001302382	67072.0	Mm.78875	NM_025950	ENSMUSG00000024780	Cdc37l1	2700033A15Rik|BB159850|Cdc37l|Harc	cell division cycle 37-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-28107658-3	chr3	28107557	28107757	+	925.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008875, intron 20 of 25)	intron (NM_008875, intron 20 of 25)	123486.0	NM_008875	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85622987-2	chr12	85622887	85623087	+	714.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205053, intron 2 of 3)	intron (NM_001205053, intron 2 of 3)	22969.0	NM_001205053	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-59282611-3	chr9	59282509	59282709	+	849.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8963.0	NM_001359282	72141.0	Mm.22456	NM_028121	ENSMUSG00000025236	Adpgk	2610017G09Rik|Adp-gk|C77577	ADP-dependent glucokinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-38348444-2	chr2	38348344	38348544	+	794.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290646, intron 1 of 4)	CpG	-2864.0	NM_010710	16870.0	Mm.142856	NM_010710	ENSMUSG00000000247	Lhx2	LH2A|Lh-2|Lim2|ap|apterous	LIM homeobox protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-34922306-3	chr4	34922154	34922354	+	849.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(GA)n|Simple_repeat|Simple_repeat	-10773.0	NR_040652	73696.0	Mm.1361	NR_040652	ENSMUSG00000085824	Platr9	2410114N07Rik	pluripotency associated transcript 9	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-150522645-4	chr5	150522565	150522765	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009765)	promoter-TSS (NM_009765)	44.0	NM_001081001	12190.0	Mm.236256	NM_009765	ENSMUSG00000041147	Brca2	Fancd1|RAB163	breast cancer 2, early onset	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-22915996-3	chr19	22915907	22916107	+	931.7000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001035239, intron 19 of 24)	intron (NM_001035239, intron 19 of 24)	165402.0	NR_029591	387200.0		NR_029591	ENSMUSG00000065507	Mir204	Mirn204|mir-204|mmu-mir-204	microRNA 204	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107696296-4	chr9	107696229	107696429	+	823.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011349, intron 2 of 17)	intron (NM_011349, intron 2 of 17)	9262.0	NM_001311151	20350.0	Mm.12903	NM_011349	ENSMUSG00000034684	Sema3f	Sema4|Semak	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F	protein-coding	2.65126483991356	2.31334790074362	2.08504742515376	2.17564681948236	2.41806705429782	1.98446612245076	2.38927714571996	3.19944677116054	0.562966278973899	0.491563346288103	0.934671478409613
Merged-chr6-29266890-2	chr6	29266790	29266990	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5598.0	NM_001190461	69573.0	Mm.45161	NM_023516	ENSMUSG00000043421	Hilpda	2310016C08Rik|AW049004|Hig2	hypoxia inducible lipid droplet associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-3293704-3	chr15	3293610	3293810	+	656.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166063, intron 4 of 8)	C-rich|Low_complexity|Low_complexity	9816.0	NM_001166063	100039139.0	Mm.455610	NM_001166063	ENSMUSG00000091119	Ccdc152	-	coiled-coil domain containing 152	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-37046052-4	chr17	37045967	37046167	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_019439, exon 1 of 23)	5' UTR (NM_019439, exon 1 of 23)	101.0	NM_019439	54393.0	Mm.32191	NM_019439	ENSMUSG00000024462	Gabbr1	GABAB1|GABAbR1|bM573K1.1	gamma-aminobutyric acid (GABA) B receptor, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-47373884-4	chr14	47373781	47373981	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145953)	promoter-TSS (NM_001145953)	21.0	NM_001145953	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	1.66632080069319	3.37655452642944	2.80403419924605	3.31437001547813	2.36475018580423	2.6678437591918	3.62121468616846	2.49209291537504	-0.0891682890997406	0.908707905366009	0.998431161219273
Merged-chr5-143550298-2	chr5	143550198	143550398	+	585.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133703, intron 1 of 1)	intron (NM_133703, intron 1 of 1)	1592.0	NM_026050	67238.0	Mm.383219	NM_026050	ENSMUSG00000083012	Fam220a	1500026F15Rik|2810453I06Rik|AW047776|Acpin1|Sipar	family with sequence similarity 220, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89912466-4	chr3	89912344	89912544	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010559, intron 1 of 9)	intron (NM_010559, intron 1 of 9)	752.0	NM_001310676	16194.0	Mm.2856	NM_010559	ENSMUSG00000027947	Il6ra	CD126|IL-6R|IL-6R-alpha|IL-6RA|Il6r	interleukin 6 receptor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-87813791-4	chr1	87813697	87813897	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009118, intron 4 of 15)	intron (NM_009118, intron 4 of 15)	10117.0	NM_009118	20215.0	Mm.1276	NM_009118	ENSMUSG00000056055	Sag	A930001K18Rik|Arr1|Irbp|arrestin	S-antigen, retina and pineal gland (arrestin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-17796514-4	chr16	17796411	17796611	+	924.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153790)	promoter-TSS (NM_153790)	-771.0	NM_153790	224024.0	Mm.194950	NM_153790	ENSMUSG00000012017	Scarf2	NSR1|SREC-II|SRECRP-1|Scatf1|Srec2|SrecII	scavenger receptor class F, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-118513137-4	chr2	118513033	118513233	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31454.0	NR_138603	171543.0	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	4.79745566609185	4.57142233744895	5.44207344168644	4.73257268849376	4.37210814501868	4.41919859789923	5.08123703649227	5.01304677411821	-0.205911750288471	0.574618158424884	0.965058951210092
Merged-chr6-29729730-2	chr6	29729636	29729836	+	629.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5761.0	NM_176996	319757.0	Mm.29279	NM_176996	ENSMUSG00000001761	Smo	E130215L21Rik|Smoh|bnb|smoothened	smoothened, frizzled class receptor	protein-coding	0.177885352672228	-0.449518208382885	-0.453494425896435	0.0764871658780074	-0.460887695968601	-0.448621412489134	-0.452617753464583	-0.456024370238125	-3.53159461346186	0.188195973438757	1
Merged-chr2-26237448-4	chr2	26237280	26237480	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302956)	promoter-TSS (NM_001302956)	19.0	NM_153559	227638.0	Mm.116769	NM_153559	ENSMUSG00000036327	Qsox2	BC030934|Qscn6l1|Soxn	quiescin Q6 sulfhydryl oxidase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-7596880-2	chr9	7596780	7596980	+	825.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25484.0	NM_001310717	234911.0	Mm.334940	NM_001030289	ENSMUSG00000070323	Mmp27	Gm180	matrix metallopeptidase 27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-104220539-4	chr3	104220449	104220649	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159354)	promoter-TSS (NM_001159354)	-143.0	NM_001159354	99470.0	Mm.264849	NM_133853	ENSMUSG00000052539	Magi3	4732496O19Rik|6530407C02Rik|AA407180|AI120132|mKIAA1634	membrane associated guanylate kinase, WW and PDZ domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-37946979-4	chr13	37946875	37947075	+	814.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033615, exon 9 of 10)	non-coding (NR_033615, exon 9 of 10)	47233.0	NM_025965	107513.0	Mm.426670	NM_025965	ENSMUSG00000021427	Ssr1	2510001K09Rik|6330400D04|AI159733|AI452176|SSR|TRAPA	signal sequence receptor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-70946818-4	chr12	70946701	70946901	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019785, intron 4 of 12)	intron (NM_019785, intron 4 of 12)	8944.0	NM_019785	56444.0	Mm.29317	NM_019785	ENSMUSG00000021076	Actr10	Actr11|Arp11	ARP10 actin-related protein 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-6359830-4	chr2	6359733	6359933	+	971.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181399, intron 1 of 13)	MER3|DNA|hAT-Charlie	7097.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-60928069-4	chr2	60927962	60928162	+	942.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	35142.0	NM_020296	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-35444663-4	chr2	35444597	35444797	+	831.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010283, intron 1 of 8)	intron (NM_010283, intron 1 of 8)	16752.0	NM_001308299	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125365814-2	chr6	125365672	125365872	+	921.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_198604, intron 14 of 16)	intron (NM_198604, intron 14 of 16)	14732.0	NM_198604	213522.0	Mm.333396	NM_198604	ENSMUSG00000038167	Plekhg6	BC026778|Gm155	pleckstrin homology domain containing, family G (with RhoGef domain) member 6	protein-coding	1.21451541052493	0.520483022406378	0.505583543877457	0.493796328973721	0.476667146727486	1.44714094686986	1.92129488240674	0.721400533064099	2.16620818634089	0.189593436806256	0.66799394718132
Merged-chr18-10129353-2	chr18	10129253	10129453	+	726.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_009071, exon 9 of 33)	exon (NM_009071, exon 9 of 33)	52439.0	NM_009071	19877.0	Mm.6710	NM_009071	ENSMUSG00000024290	Rock1	1110055K06Rik|Rock-I	Rho-associated coiled-coil containing protein kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-34725551-3	chr19	34725448	34725648	+	972.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172838, intron 1 of 6)	intron (NM_172838, intron 1 of 6)	21563.0	NM_172838	240638.0	Mm.74636	NM_172838	ENSMUSG00000009378	Slc16a12	3230401A21|AW210596	solute carrier family 16 (monocarboxylic acid transporters), member 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80751901-2	chr7	80751801	80752001	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_016721, exon 13 of 38)	exon (NM_016721, exon 13 of 38)	51430.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-142562217-2	chr3	142562117	142562317	+	965.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355403, intron 3 of 11)	RMER17C|LTR|ERVK	1861.0	NM_001289493	55932.0	Mm.439718	NM_018734	ENSMUSG00000028268	Gbp3	AW228655|GBP-3|GBP-4|Gbp4	guanylate binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-118633598-2	chr5	118633498	118633698	+	911.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347445, intron 2 of 30)	intron (NM_001347445, intron 2 of 30)	72879.0	NM_172424	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-161767376-3	chr1	161767315	161767515	+	747.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21080.0	NM_001205243	14103.0	Mm.3355	NM_010177	ENSMUSG00000000817	Fasl	APT1LG1|CD178|CD95-L|CD95L|Fas-L|Faslg|Tnfsf6|Tnlg1a|gld	Fas ligand (TNF superfamily, member 6)	protein-coding	1.20283942044997	2.70776679137314	1.49285858226474	1.07684458791316	1.02953999913074	1.7276147326202	0.857259316754677	1.45233661609404	-1.45894892231345	0.230188955926052	0.72394357324632
Merged-chr7-88192918-4	chr7	88192815	88193015	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	-85170.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-27783276-4	chr15	27783164	27783364	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081302, intron 34 of 56)	intron (NM_001081302, intron 34 of 56)	-101722.0	NM_001242423	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-29544157-1	chr11	29544057	29544257	+	651.0	f1_c57bl6.idr	intron (NM_001282118, intron 12 of 13)	B3|SINE|B2	-3793.0	NM_028504	73324.0	Mm.69388	NM_028504	ENSMUSG00000020461	Clhc1	1700034F02Rik	clathrin heavy chain linker domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-43567498-2	chr17	43567398	43567598	+	570.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013737)	promoter-TSS (NM_013737)	-953.0	NM_013737	27226.0	Mm.9277	NM_013737	ENSMUSG00000023913	Pla2g7	PAF-AH|R75400	phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	protein-coding	-1.8418762459921	-1.8125357239735	-1.82140854000656	-1.82869693527674	-1.56059678980999	-1.8106129477253	-1.81939992894326	-1.82739231600805	1.3620893379502	0.699511506488145	1
Merged-chr7-43585079-2	chr7	43584979	43585179	+	613.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357769, intron 2 of 3)	B3|SINE|B2	5493.0	NM_001357769	210105.0	Mm.234422	NM_172482	ENSMUSG00000030469	Zfp719	8030458J18|9430094P17Rik|C630016O21Rik|mszf6	zinc finger protein 719	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-87434756-2	chr11	87434656	87434856	+	579.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199293, intron 2 of 30)	RMER17C|LTR|ERVK	7165.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-90196606-2	chr16	90196506	90196706	+	623.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24136.0	NM_011434	20655.0	Mm.276325	NM_011434	ENSMUSG00000022982	Sod1	B430204E11Rik|Cu/Zn-SOD|CuZnSOD|Ipo-1|Ipo1|SODC|Sod-1	superoxide dismutase 1, soluble	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-34149346-2	chr8	34149246	34149446	+	720.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2607.0	NM_026609	68192.0	Mm.34212	NM_026609	ENSMUSG00000031513	Leprotl1	1110067H13Rik|1520402O14Rik|AI854296	leptin receptor overlapping transcript-like 1	protein-coding	1.53308682886439	1.48368795004307	1.78020415653009	1.51341163155458	1.04464785647159	0.912989919496047	1.79603594621779	0.884089438700937	-1.2846140518081	0.321451962341415	0.823903365381149
Merged-chr19-3769913-2	chr19	3769813	3770013	+	986.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001167889, intron 2 of 10)	intron (NM_001167889, intron 2 of 10)	2492.0	NM_001167885	225888.0	Mm.278578	NM_144871	ENSMUSG00000045098	Kmt5b	AA117471|C630029K18Rik|Suv4-20h1|Suv420h1	lysine methyltransferase 5B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-78937141-4	chr17	78937084	78937284	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028611)	promoter-TSS (NM_028611)	49.0	NM_028611	73694.0	Mm.104959	NM_028611	ENSMUSG00000024082	Ndufaf7	2410091C18Rik|AL033374|PRO1853	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex assembly factor 7	protein-coding	4.53604698833635	4.66738868548927	3.34313875594203	4.90916215039233	5.16086629938308	4.89625466076458	5.17110844041773	5.15832782523669	0.756646146230712	0.0469991610481238	0.313856735207081
Merged-chr3-31145937-6	chr3	31145838	31146038	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3982.0	NM_008770	18417.0	Mm.4425	NM_008770	ENSMUSG00000037625	Cldn11	Claudin-11|Claudin11|Osp|Otm	claudin 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101550950-2	chr11	101550850	101551050	+	758.6999509999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_009764, intron 1 of 22)	B1_Mur1|SINE|Alu	1005.0	NM_009764	12189.0	Mm.244975	NM_009764	ENSMUSG00000017146	Brca1	-	breast cancer 1, early onset	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-30969353-4	chr3	30969238	30969438	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001165955)	promoter-TSS (NM_001165955)	77.0	NM_001165954	241915.0	Mm.233173	NM_153421	ENSMUSG00000037652	Phc3	E030046K01Rik|Edr3|Hph3	polyhomeotic 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-179834238-4	chr1	179834137	179834337	+	965.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30222.0	NM_026375	226747.0	Mm.128165	NM_026375	ENSMUSG00000026491	Ahctf1	6230412P20Rik|AV011447|Elys	AT hook containing transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10740900-3	chr19	10740798	10740998	+	944.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027805)	promoter-TSS (NR_027805)	-49.0	NR_027805	403202.0	Mm.34482	NM_207529	ENSMUSG00000067577	A430093F15Rik	Gm674	RIKEN cDNA A430093F15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-145055046-2	chr5	145054946	145055146	+	702.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	12056.0	NM_027069	69396.0	Mm.45463	NM_027069	ENSMUSG00000029620	1700018F24Rik	AV045857	RIKEN cDNA 1700018F24 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135314637-4	chr4	135314561	135314761	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38553.0	NM_016799	51796.0	Mm.1963	NM_016799	ENSMUSG00000028809	Srrm1	AA407769|POP101|Srm160	serine/arginine repetitive matrix 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127848727-2	chr7	127848581	127848781	+	869.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009294, intron 10 of 10)	intron (NM_009294, intron 10 of 10)	6873.0	NM_009294	20909.0	Mm.24867	NM_009294	ENSMUSG00000030805	Stx4a	Stx4|Syn-4|Syn4	syntaxin 4A (placental)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-67196811-2	chr6	67196711	67196911	+	671.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70168.0	NM_001113566	66870.0	Mm.240490	NM_025814	ENSMUSG00000036371	Serbp1	1200009K13Rik|9330147J08Rik|AL022786|Pairbp1	serpine1 mRNA binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-100655692-1	chr5	100655592	100655792	+	777.0	f1_c57bl6.idr	intron (NM_027978, intron 6 of 6)	intron (NM_027978, intron 6 of 6)	18564.0	NM_027978	71883.0	Mm.260661	NM_027978	ENSMUSG00000029319	Coq2	2310002F18Rik|PHB:PPT	coenzyme Q2 4-hydroxybenzoate polyprenyltransferase	protein-coding	0.882195255619683	0.501873856951177	0.844782662807711	1.41702482134578	0.772567194192346	1.03941055882178	0.494683962186511	0.486717854813878	-1.22477664041261	0.455438898963731	1
Merged-chr12-40719133-3	chr12	40719048	40719248	+	652.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 16 of 52)	Lx6|LINE|L1	273095.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106106369-4	chr11	106106256	106106456	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011947, intron 2 of 15)	intron (NM_011947, intron 2 of 15)	21454.0	NM_011947	26406.0	Mm.27041	NM_011947	ENSMUSG00000020700	Map3k3	AW548911|MAPKKK3|Mekk3|mKIAA4031	mitogen-activated protein kinase kinase kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125137502-4	chr6	125137395	125137595	+	763.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_138747, exon 8 of 16)	exon (NM_138747, exon 8 of 16)	5612.0	NM_138747	110109.0	Mm.29203	NM_138747	ENSMUSG00000038279	Nop2	120kDa|A530002O17|Nol1	NOP2 nucleolar protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-39521058-2	chr1	39520958	39521158	+	863.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13B1|LTR|ERVK	-14643.0	NM_028043	52846.0	Mm.259421	NM_028043	ENSMUSG00000003135	Cnot11	2410015L18Rik|C40|D1Bwg0212e	CCR4-NOT transcription complex, subunit 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-103083420-2	chr10	103083320	103083520	+	667.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163559, intron 23 of 25)	L1_Mus4|LINE|L1	-54643.0	NM_172553	216285.0	Mm.19287	NM_172553	ENSMUSG00000036602	Alx1	AI314867|C130005I02|Cart1	ALX homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-16989773-3	chr10	16989672	16989872	+	799.861084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038020, intron 2 of 8)	intron (NR_038020, intron 2 of 8)	106010.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-65238673-3	chr2	65238558	65238758	+	811.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027225)	promoter-TSS (NM_027225)	-32.0	NM_027225	319876.0	Mm.34159	NM_027225	ENSMUSG00000034903	Cobll1	1810047P18Rik|Coblr1|D430044D16Rik	Cobl-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-79535518-4	chr14	79535429	79535629	+	940.5125119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286411, intron 1 of 8)	intron (NM_001286411, intron 1 of 8)	19855.0	NM_001286411	13709.0	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-37680512-4	chr13	37680426	37680626	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-145512.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119615399-2	chr11	119615324	119615524	+	779.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_028898, intron 1 of 33)	intron (NM_028898, intron 1 of 33)	12519.0	NM_028898	74370.0	Mm.209933	NM_028898	ENSMUSG00000025583	Rptor	4932417H02Rik|Rap|Raptor|mKIAA1303	regulatory associated protein of MTOR, complex 1	protein-coding	0.602128632622272	1.25707173204042	0.459482924279784	1.14754505355357	0.607386112492935	0.471310179495809	1.20963484449576	0.453273507420905	-0.881363597397695	0.599383321264167	1
Merged-chr3-96269628-4	chr3	96269542	96269742	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175666)	promoter-TSS (NM_175666)	-58.0	NM_175666	319189.0	Mm.297655	NM_175666	ENSMUSG00000105827	Hist2h2bb	H2b-616	histone cluster 2, H2bb	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122951749-4	chr5	122951605	122951805	+	923.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003953, intron 6 of 22)	intron (NM_001003953, intron 6 of 22)	37394.0	NM_001003953	30841.0	Mm.86406	NM_013910	ENSMUSG00000029475	Kdm2b	Cxxc2|Fbl10|Fbxl10|Jhdm1b|PCCX2	lysine (K)-specific demethylase 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-114784784-4	chr5	114784699	114784899	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026718, intron 1 of 14)	intron (NM_026718, intron 1 of 14)	9659.0	NM_026718	68420.0	Mm.275554	NM_026718	ENSMUSG00000041870	Ankrd13a	1100001D10Rik|ANKRD13|AU046136	ankyrin repeat domain 13a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94597847-4	chr10	94597755	94597955	+	953.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11656.0	NR_106070	102466817.0		NR_106070	ENSMUSG00000098544	Mir7211	Gm27536|mmu-mir-7211	microRNA 7211	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-84162825-1	chr10	84162725	84162925	+	572.0	f0_balb.idr	Intergenic	Intergenic	-62128.0	NR_152790	102637349.0	Mm.402869	NR_152790	ENSMUSG00000111049	Gm34184	-	predicted gene, 34184	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-86555742-1	chr4	86555642	86555842	+	627.0	f1_c57bl6.idr	intron (NM_001081096, intron 1 of 3)	ID_B1|SINE|B4	2561.0	NM_001081096	75811.0	Mm.56451	NM_001081096	ENSMUSG00000028492	Saxo1	4930500O09Rik|Fam154a	stabilizer of axonemal microtubules 1	protein-coding	0.442882373713721	1.31023733342273	0.853558724407079	0.457832790377102	0.445129321072606	1.06362152511151	1.45927910780085	0.459385617783245	0.499793215685614	0.773848866253724	0.998431161219273
Merged-chr4-41639289-2	chr4	41639189	41639389	+	751.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027147, intron 1 of 1)	intron (NM_027147, intron 1 of 1)	1013.0	NM_027147	69638.0	Mm.372459	NM_027147	ENSMUSG00000028445	Enho	1110065P19Rik|2310040A07Rik	energy homeostasis associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-106611331-4	chr8	106611182	106611382	+	874.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009864, intron 2 of 15)	intron (NM_009864, intron 2 of 15)	7932.0	NM_009864	12550.0	Mm.35605	NM_009864	ENSMUSG00000000303	Cdh1	AA960649|ARC-1|E-cad|Ecad|L-CAM|UVO|Um	cadherin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-100462742-2	chr15	100462642	100462842	+	911.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6269.0	NM_001357983	68614.0	Mm.275272	NM_134093	ENSMUSG00000037353	Letmd1	1110019O13Rik|AI593524|BB130465|BB235638|HCCR-2|HCCR1|MCC-32|Mccr	LETM1 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-40846823-4	chr3	40846718	40846918	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_038067)	promoter-TSS (NR_038067)	36.0	NM_028140	72175.0	Mm.130610	NM_028140	ENSMUSG00000025759	Mfsd8	2810423E13Rik|AI836898|AV142426|Cln7	major facilitator superfamily domain containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21165763-2	chr9	21165663	21165863	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183408)	promoter-TSS (NM_183408)	49.0	NM_183408	18577.0	Mm.191749	NM_019798	ENSMUSG00000032177	Pde4a	D9Ertd60e|Dpde2	phosphodiesterase 4A, cAMP specific	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-109657445-6	chr4	109657369	109657569	+	985.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	7903.0	NM_007671	12580.0	Mm.1912	NM_007671	ENSMUSG00000028551	Cdkn2c	C77269|INK4c|p18|p18-INK4c|p18-INK6|p18INK4c	cyclin dependent kinase inhibitor 2C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-142506690-2	chr7	142506590	142506790	+	570.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033261)	promoter-TSS (NR_033261)	81.0	NR_033261	677289.0	Mm.350054	NR_033261	ENSMUSG00000043795	Prr33	Gm14492	proline rich 33	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-99085088-4	chr10	99084989	99085189	+	919.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21993.0	NM_027740	382406.0	Mm.440656	NM_027740	ENSMUSG00000019952	Poc1b	4933430F16Rik|Wdr51b	POC1 centriolar protein B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-59012776-6	chr12	59012719	59012919	+	816.444458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009147)	promoter-TSS (NM_009147)	-572.0	NM_025656	66603.0	Mm.35353	NM_025656	ENSMUSG00000060121	Gemin2	Sip1|gemin-2	gem nuclear organelle associated protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-135453867-2	chr1	135453767	135453967	+	555.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_049188)	TTS (NR_049188)	816.0	NR_049188	100885827.0		NR_049188	ENSMUSG00000093515	Mir1231	Gm23720|mir-1231|mmu-mir-1231	microRNA 1231	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-118387719-2	chr1	118387619	118387819	+	607.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB2|LINE|L1	-1339.0	NM_001359329	76707.0	Mm.138740	NM_029709	ENSMUSG00000064302	Clasp1	1700030C23Rik|5730583A19Rik|B130045P17Rik|CLASP1alpha	CLIP associating protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-87704194-2	chr1	87704094	87704294	+	708.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110192, intron 18 of 26)	intron (NM_001110192, intron 18 of 26)	-51817.0	NM_029846	77040.0	Mm.272972	NM_029846	ENSMUSG00000026289	Atg16l1	1500009K01Rik|Apg16l|Atg16l|WDR30	autophagy related 16-like 1 (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-72201809-4	chr4	72201705	72201905	+	985.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285529)	promoter-TSS (NM_001285529)	561.0	NR_027923	68285.0	Mm.37541	NR_027923		C630043F03Rik	AI851307	RIKEN cDNA C630043F03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-57571325-4	chr16	57571215	57571415	+	897.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001177871, exon 2 of 2)	exon (NM_001177871, exon 2 of 2)	22073.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0.196937246887102	0.98407067757406	0.220178868655737	0.211568871855998	0.689045488918683	1.51911863801952	0.222613566650932	0.213083684792535	1.54383412308714	0.426062514001479	0.902023751857747
Merged-chr3-9199116-3	chr3	9199002	9199202	+	942.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51465.0	NM_177660	229055.0	Mm.103262	NM_177660	ENSMUSG00000069114	Zbtb10	4832414A18|AU021107|RINZF	zinc finger and BTB domain containing 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-92459329-4	chr2	92459211	92459411	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_211358, exon 1 of 2)	5' UTR (NM_211358, exon 1 of 2)	483.0	NM_211358	228368.0	Mm.273990	NM_145832	ENSMUSG00000049922	Slc35c1	E430007K15Rik|fuct1	solute carrier family 35, member C1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-39996432-3	chr12	39996254	39996454	+	854.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41022.0	NM_007487	11861.0	Mm.12723	NM_007487	ENSMUSG00000047446	Arl4a	AI467555|Arl4	ADP-ribosylation factor-like 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-72802739-2	chr5	72802639	72802839	+	701.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013689, intron 3 of 17)	intron (NM_013689, intron 3 of 17)	-49962.0	NM_001122754	22165.0	Mm.3264	NM_013698	ENSMUSG00000054892	Txk	A130089B16Rik|Btkl|PTK-RL-18|PTK4|Rlk	TXK tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-78366282-4	chr17	78366200	78366400	+	997.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015800, intron 13 of 16)	intron (NM_015800, intron 13 of 16)	51852.0	NM_001285949	225020.0	Mm.236835	NM_199448	ENSMUSG00000056121	Fez2	9030616F16|D17Ertd315e	fasciculation and elongation protein zeta 2 (zygin II)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43562489-4	chr4	43562377	43562577	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013497)	promoter-TSS (NM_013497)	106.0	NM_011602	21894.0	Mm.208601	NM_011602	ENSMUSG00000028465	Tln1	Tln	talin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-7485335-4	chr19	7485204	7485404	+	904.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-2013.0	NM_001003934	20168.0	Mm.246990	NM_053076	ENSMUSG00000024758	Rtn3	RTN3-A1	reticulon 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-80798539-4	chr15	80798454	80798654	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177124)	promoter-TSS (NM_177124)	-56.0	NM_177124	213988.0	Mm.131328	NM_144812	ENSMUSG00000047888	Tnrc6b	2700090M07Rik|A730065C02Rik|AI848765|D230019K20Rik	trinucleotide repeat containing 6b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122662712-4	chr5	122662603	122662803	+	982.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038845, intron 5 of 12)	Lx8|LINE|L1	12279.0	NM_001284402	18439.0	Mm.42026	NM_011027	ENSMUSG00000029468	P2rx7	AI467586|P2X(7)|P2X7R	purinergic receptor P2X, ligand-gated ion channel, 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117835551-2	chr10	117835451	117835651	+	561.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_024457, intron 1 of 7)	B4A|SINE|B4	10423.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-72782728-4	chr11	72782627	72782827	+	742.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001024926, exon 3 of 4)	exon (NM_001024926, exon 3 of 4)	13112.0	NM_001024926	192986.0	Mm.194755	NM_001024926	ENSMUSG00000057778	Cyb5d2	9330151E16Rik|Gm2	cytochrome b5 domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-35534367-4	chr12	35534253	35534453	+	933.88092	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001314027, intron 1 of 9)	intron (NM_001314027, intron 1 of 9)	636.0	NM_013464	11622.0	Mm.341377	NM_013464	ENSMUSG00000019256	Ahr	Ah|Ahh|Ahre|In|bHLHe76	aryl-hydrocarbon receptor	protein-coding	1.34104139934684	0.819751500129892	1.01656522608368	1.95232221712684	1.10798154986319	0.822947086799224	1.4826413245487	1.43066200355764	-0.488187535254068	0.718037935509745	0.998431161219273
Merged-chr13-74000708-3	chr13	74000620	74000820	+	684.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-8699.0	NM_182839	72948.0	Mm.39752	NM_182839	ENSMUSG00000021573	Tppp	2900041A09Rik|AI849835	tubulin polymerization promoting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65551636-2	chr9	65551536	65551736	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_153119)	TTS (NM_153119)	28451.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-22308954-4	chr9	22308849	22309049	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1311.0	NM_145612	235050.0	Mm.306038	NM_145612	ENSMUSG00000066829	Zfp810	BC005471	zinc finger protein 810	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-114668611-2	chr5	114668511	114668711	+	564.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_019821)	TTS (NM_019821)	-10190.0	NM_022017	63873.0	Mm.266450	NM_022017	ENSMUSG00000014158	Trpv4	0610033B08Rik|OTRPC4|Trp12|VR-OAC|VRL-2|VROAC	transient receptor potential cation channel, subfamily V, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-51091073-2	chr14	51090973	51091173	+	945.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021472)	promoter-TSS (NM_021472)	-4.0	NM_001161731	11727.0	Mm.202665	NM_007447	ENSMUSG00000072115	Ang	AI385586|Ang1|Rnase5|Rnase5a	angiogenin, ribonuclease, RNase A family, 5	protein-coding	1.24360430491375	1.58886932344349	2.60981100508776	1.06759583886749	1.93861867285534	1.38496459946394	2.22012399253089	2.04468096881064	0.328286761740058	0.769884988720324	0.998431161219273
Merged-chr16-57538219-3	chr16	57538122	57538322	+	768.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 4 of 4)	intron (NM_001040397, intron 4 of 4)	-11020.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	1.97130473730727	1.92864190180644	1.26815068594483	2.28473475020185	1.87227873427887	2.64033302622999	2.02521058968137	2.08688037141228	0.696780952457372	0.472102013674128	0.926125823511231
Merged-chr7-102687280-4	chr7	102687166	102687366	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001307998)	promoter-TSS (NM_001307998)	61.0	NM_198012	101700.0	Mm.39043	NM_198012	ENSMUSG00000073968	Trim68	AI894158|F730114J12Rik|Rnf137|SS-56	tripartite motif-containing 68	protein-coding	5.21879435352632	5.30405546094878	4.45185908734736	4.38481650543591	4.86205008454254	4.98751563129339	5.28259072384529	5.39908741765109	0.289946789653783	0.404073619261284	0.889123345574356
Merged-chr8-83161866-1	chr8	83161766	83161966	+	641.5	f1_c57bl6.idr	Intergenic	Intergenic	-3486.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	-0.865326703316383	-0.849971874135937	0.280665258210813	-0.858864759381203	-0.86435674098481	-0.848731039658829	-0.853951331253819	-0.858192605091486	-3.66751939073779	0.204629335831286	1
Merged-chr12-109509153-4	chr12	109509075	109509275	+	887.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31821.0	NR_027652	17263.0	Mm.289645	NM_144513	ENSMUSG00000021268	Meg3	2900016C05Rik|3110050O07Rik|6330408G06Rik|AI425946|AW108224|D12Bwg1266e|Gtl2|R74756|R75394	maternally expressed 3	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44962849-4	chr7	44962731	44962931	+	831.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001252470, exon 13 of 19)	exon (NM_001252470, exon 13 of 19)	12020.0	NM_001357670	78070.0	Mm.231465	NM_153679	ENSMUSG00000007783	Cpt1c	6530437J22Rik|9630004I06Rik|CPT I-C|CPT IC|CPT1-B|CPTI-B	carnitine palmitoyltransferase 1c	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-4527340-2	chr7	4527240	4527440	+	673.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033548, intron 6 of 11)	intron (NM_001033548, intron 6 of 11)	-4812.0	NM_009406	21954.0	Mm.27674	NM_009406	ENSMUSG00000035458	Tnni3	Tn1|cTnI	troponin I, cardiac 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-59536896-2	chr11	59536796	59536996	+	907.0833130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-4673.0	NM_001359638	216799.0	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-11178192-3	chr12	11177971	11178171	+	842.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26431.0	NR_131084	77442.0	Mm.159922	NR_131083	ENSMUSG00000112041	9530020I12Rik	-	RIKEN cDNA 9530020I12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-85084615-5	chr8	85084408	85084608	+	956.14447	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010764, intron 2 of 23)	intron (NM_010764, intron 2 of 23)	1239.0	NM_010764	17159.0	Mm.4219	NM_010764	ENSMUSG00000005142	Man2b1	AW107687|LAMAN	mannosidase 2, alpha B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-74494516-4	chr13	74494398	74494598	+	947.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146231)	promoter-TSS (NM_146231)	-548.0	NM_146231	235956.0		NM_146231	ENSMUSG00000069208	Zfp825	-	zinc finger protein 825	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-109244775-3	chr11	109244656	109244856	+	823.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001165934, intron 13 of 16)	intron (NM_001165934, intron 13 of 16)	53425.0	NM_001165934	19739.0	Mm.38548	NM_011268	ENSMUSG00000020599	Rgs9	RGS9-1|Rgs9-2	regulator of G-protein signaling 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27615571-4	chr17	27615461	27615661	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019837, intron 1 of 4)	L2|LINE|L2	7403.0	NM_001291046	56409.0	Mm.144699	NM_019837	ENSMUSG00000024213	Nudt3	1110011B09Rik|AA960325|Dipp|Dipp1	nudix (nucleotide diphosphate linked moiety X)-type motif 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-47647746-3	chr9	47647646	47647846	+	933.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	117394.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	0.458284910279866	0.138665895764386	0.291044116168563	0.510591470887839	0.366600209216919	0.139707927204035	0.295377693974078	0.40507093302605	-0.429115892954818	0.814465351725741	1
Merged-chr9-104239287-4	chr9	104239188	104239388	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359740, intron 2 of 56)	intron (NM_001359740, intron 2 of 56)	23642.0	NM_001359740	235567.0	Mm.217256	NM_001163026	ENSMUSG00000032560	Dnajc13	D030002L11Rik|Gm1124|RME-8|Rme8|mKIAA0678	DnaJ heat shock protein family (Hsp40) member C13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-35679674-2	chr8	35679574	35679774	+	677.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001081279)	TTS (NM_001081279)	-90654.0	NR_040376	100504714.0	Mm.381744	NR_040376	ENSMUSG00000097357	Gm16793	-	predicted gene, 16793	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-59524463-2	chr11	59524363	59524563	+	622.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17106.0	NM_001359638	216799.0	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-31082280-2	chr3	31082180	31082380	+	612.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12778.0	NM_001039090	20482.0	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-32614223-1	chr16	32614123	32614323	+	732.0	f1_balb.idr	intron (NM_001357298, intron 2 of 18)	intron (NM_001357298, intron 2 of 18)	5101.0	NM_001357298	22042.0	Mm.28683	NM_011638	ENSMUSG00000022797	Tfrc	2610028K12Rik|CD71|E430033M20Rik|Mtvr1|TFR|TFR1|TR|Trfr|p90	transferrin receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-27659951-1	chr3	27659851	27660051	+	547.0	f1_balb.idr	intron (NM_173182, intron 1 of 25)	B4A|SINE|B4	50501.0	NM_001356953	72007.0	Mm.38832	NM_173182	ENSMUSG00000039286	Fndc3b	1600019O04Rik|AW550168|Fad104|mKIAA4164	fibronectin type III domain containing 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-4950785-1	chr7	4950685	4950885	+	1000.0	f0_balb.idr	Intergenic	Intergenic	13563.0	NM_001146329	381836.0	Mm.297829	NM_001146329	ENSMUSG00000030433	Sbk2	Gm1079|Sgk069	SH3-binding domain kinase family, member 2	protein-coding	0.605357737321258	0.210894407953935	0.206485595324956	0.34290306368195	0.614251440766293	0.381564222545373	0.495494983611308	0.345511163967201	0.836482634892869	0.64346589655854	1
Merged-chr1-155533653-1	chr1	155533553	155533753	+	545.0	f0_balb.idr	Intergenic	Intergenic	-6542.0	NR_132128	433367.0	Mm.359304	NR_132128	ENSMUSG00000073535	Gm5532	EG433367	predicted gene 5532	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5072741-2	chr19	5072620	5072820	+	769.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	4642.0	NM_054042	70445.0	Mm.29597	NM_054042	ENSMUSG00000056481	Cd248	2610111G01Rik|AI842296|Cd164l1|Tem1	CD248 antigen, endosialin	protein-coding	-0.734697168562934	-1.28094420828655	-1.29131886204401	-1.29984091153697	-1.31008363841169	-1.2786959775384	-1.28897026783925	-1.29831546875223	-2.42902550944018	0.482518537989684	1
Merged-chr8-68837855-3	chr8	68837744	68837944	+	911.2777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42711.0	NM_008509	16956.0	Mm.1514	NM_008509	ENSMUSG00000015568	Lpl	-	lipoprotein lipase	protein-coding	4.96605296928841	4.3355945449322	4.19764819568972	4.53999506116762	3.30122466336393	3.8971139131317	2.73665909462348	2.45777618891744	-1.86607158675767	0.000276091957056261	0.00692037179824726
Merged-chr6-116207182-2	chr6	116207082	116207282	+	836.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026585)	promoter-TSS (NM_026585)	811.0	NR_131013	78739.0	Mm.417032	NR_131013	ENSMUSG00000108030	9530062K07Rik	-	RIKEN cDNA 9530062K07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-118388478-4	chr2	118388363	118388563	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177806)	promoter-TSS (NM_001177806)	-154.0	NM_001355383	27103.0	Mm.217616	NM_013719	ENSMUSG00000005102	Eif2ak4	2610011M03|GCN2|MGCN2	eukaryotic translation initiation factor 2 alpha kinase 4	protein-coding	5.91881562051498	5.80225919596347	5.83667272219323	5.8327783496328	6.18452296234255	5.81083637249663	6.69188573998548	6.12447819220509	0.42995688170504	0.0773974025512393	0.423380259487737
Merged-chr1-54982729-1	chr1	54982629	54982829	+	984.0	f1_c57bl6.idr	Intergenic	Intergenic	44749.0	NM_031179	81898.0	Mm.279736	NM_031179	ENSMUSG00000025982	Sf3b1	155kDa|2810001M05Rik|AA409119|Prp10|SAP155|SF3b155|TA-8|Targ4	splicing factor 3b, subunit 1	protein-coding	-0.0554882574825663	-0.0295701163942277	-0.0379155762717729	1.26358456891163	0.416112683192647	-0.0277073740574966	0.186206682540364	-0.0433015341423904	-1.65973163303268	0.435762563244723	1
Merged-chr2-51090795-4	chr2	51090716	51090916	+	711.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58295.0	NM_028810	74194.0	Mm.46497	NM_028810	ENSMUSG00000017144	Rnd3	2610017M01Rik|AI661404|Arhe|Rhoe	Rho family GTPase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-24164736-4	chr10	24164658	24164858	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016797, intron 2 of 9)	intron (NM_016797, intron 2 of 9)	15441.0	NM_016797	53331.0	Mm.248042	NM_016797	ENSMUSG00000019998	Stx7	AI315064|AI317144|AW107239|Syn7	syntaxin 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-76500968-1	chr11	76500868	76501068	+	589.0	f1_c57bl6.idr	intron (NM_198018, intron 1 of 21)	intron (NM_198018, intron 1 of 21)	-6473.0	NM_001346670	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	-1.22315906685268	-1.19557143632602	-1.20673282037136	-0.55836125556573	-1.22265483704505	-1.19315271784257	-1.20420612767407	-1.21425999345206	-2.67891099987134	0.437057736398543	1
Merged-chr16-53377980-2	chr16	53377880	53378080	+	557.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3C|LINE|L1	-562236.0	NR_040495	73820.0	Mm.60493	NR_040495		4930404A05Rik	-	RIKEN cDNA 4930404A05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-106007342-3	chr8	106007243	106007443	+	732.127747	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR19|LTR|ERVK	-4135.0	NM_025518	66369.0	Mm.287500	NM_025518	ENSMUSG00000031901	Dus2	2310016K04Rik|Dus2l	dihydrouridine synthase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-87449609-2	chr11	87449509	87449709	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199293, intron 2 of 30)	B2_Mm1t|SINE|B2	22018.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-52236456-2	chr6	52236356	52236556	+	779.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001122950, intron 1 of 1)	intron (NM_001122950, intron 1 of 1)	-1517.0	NM_008263	15395.0	Mm.5	NM_008263	ENSMUSG00000000938	Hoxa10	Hox-1.8|Hoxa-10	homeobox A10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69992747-2	chr11	69992647	69992847	+	820.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_019749, intron 3 of 3)	intron (NM_019749, intron 3 of 3)	1377.0	NM_019749	56486.0	Mm.272460	NM_019749	ENSMUSG00000018567	Gabarap	-	gamma-aminobutyric acid receptor associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27351095-2	chr2	27350995	27351195	+	739.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_133905, intron 1 of 29)	RMER19B|LTR|ERVK	76513.0	NR_133905	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-142814974-2	chr5	142814874	142815074	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178242, intron 2 of 15)	intron (NM_178242, intron 2 of 15)	2413.0	NM_178242	231861.0	Mm.354649	NM_178242	ENSMUSG00000039477	Tnrc18	BC025631|EG381742|Zfp469	trinucleotide repeat containing 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135806815-4	chr5	135806709	135806909	+	976.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11297.0	NM_021403	58212.0	Mm.271230	NM_021403	ENSMUSG00000039860	Srrm3	2900083I11Rik|AB041661|SRm300-like|Srrm2l	serine/arginine repetitive matrix 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-140679896-4	chr4	140679792	140679992	+	965.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13987.0	NM_001112722	72754.0	Mm.29329	NM_172415	ENSMUSG00000040964	Arhgef10l	2810441C07Rik	Rho guanine nucleotide exchange factor (GEF) 10-like	protein-coding	3.94656279346377	3.70829412046811	2.98465678322684	3.99342031148372	3.67001594193118	3.11699088987976	3.24472001148461	3.9039539553641	-0.283543176761172	0.599364000202298	0.972480518539556
Merged-chr13-108057068-2	chr13	108056999	108057199	+	695.75	f0_balb.idr|f1_balb.idr	intron (NM_001127346, intron 3 of 3)	ORR1E|LTR|ERVL-MaLR	12625.0	NM_001048250	75616.0	Mm.491164	NM_001048250	ENSMUSG00000071180	Smim15	2810008M24Rik	small integral membrane protein 15	protein-coding	-0.0360864993643356	-0.249730378247549	-0.252813770153481	-0.255165998353954	-0.0304955743386248	-0.249029941696941	0.139627009092473	0.00511818100874699	1.90124213126828	0.417912756777465	1
Merged-chr7-142737122-3	chr7	142737016	142737216	+	716.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57390.0	NM_001185084	16334.0	Mm.4946	NM_008387	ENSMUSG00000000215	Ins2	AA986540|Ins-2|InsII|Mody|Mody4	insulin II	protein-coding	3.99512383221955	2.7704248170724	3.58090226829909	2.20925402952244	4.23022720366663	4.02809735252815	4.18831824103383	3.41400823967075	0.977681527867251	0.0968278744906114	0.483573045964878
Merged-chr1-79760868-3	chr1	79760770	79760970	+	851.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027057, intron 1 of 4)	intron (NM_027057, intron 1 of 4)	899.0	NM_001111279	69368.0	Mm.293273	NM_027057	ENSMUSG00000073643	Wdfy1	1700013B03Rik|1700120F24Rik|FENS-1|Jr1|WDF1|ZFYVE17|mKIAA1435	WD repeat and FYVE domain containing 1	protein-coding	0.240768063323508	0.120713334073595	0.660257986744279	0.621824842061254	0.105491627144055	0.121916681557399	0.28899716071609	0.406146230437682	-1.54191202043992	0.430906023392074	1
Merged-chr8-105413605-4	chr8	105413510	105413710	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177791)	promoter-TSS (NM_177791)	-12.0	NM_001170788	270091.0	Mm.212709	NM_001033371	ENSMUSG00000054320	Lrrc36	BC036564	leucine rich repeat containing 36	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-36164902-4	chr15	36164815	36165015	+	942.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081253)	promoter-TSS (NM_001081253)	-31.0	NM_001081253	78803.0	Mm.26393	NM_175281	ENSMUSG00000048230	Fbxo43	4930533G20Rik|Emi2	F-box protein 43	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-83719442-1	chr8	83719342	83719542	+	756.0	f1_c57bl6.idr	exon (NM_197982, exon 2 of 11)	exon (NM_197982, exon 2 of 11)	4265.0	NM_197982	68278.0	Mm.28222	NM_197982	ENSMUSG00000005481	Ddx39	2610307C23Rik|BAT1|DDXL|Ddx39a|URH49	DEAD (Asp-Glu-Ala-Asp) box polypeptide 39	protein-coding	-2.18361151404719	-2.02201993626881	-2.16403530460334	-2.1710062446989	-2.18164157430194	-2.15370992785044	-2.16211418110791	-2.16975844975469	-0.683654500252594	0.846597994014493	1
Merged-chr16-24859952-4	chr16	24859831	24860031	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 9 of 12)	intron (NM_178665, intron 9 of 12)	138076.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-69226167-4	chr17	69226070	69226270	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355736, intron 3 of 21)	RLTR16|LTR|ERVK	51036.0	NR_045428	69750.0	Mm.439063	NR_045428	ENSMUSG00000100572	2410021H03Rik	-	RIKEN cDNA 2410021H03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-93167233-4	chr2	93167131	93167331	+	981.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20317.0	NM_001356536	277414.0	Mm.41033	NM_001025246	ENSMUSG00000068735	Trp53i11	Tp53i11	transformation related protein 53 inducible protein 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-79789095-4	chr3	79789003	79789203	+	878.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51152.0	NM_212452	381489.0	Mm.331086	NM_212452	ENSMUSG00000034009	Rxfp1	Gm1018|Lgr7	relaxin/insulin-like family peptide receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135400487-4	chr5	135400367	135400567	+	929.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5921.0	NM_148932	107939.0	Mm.28399	NM_148932	ENSMUSG00000053293	Pom121	2610027A18Rik|C80273|mKIAA0618	nuclear pore membrane protein 121	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-108460584-4	chr9	108460508	108460708	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133744)	promoter-TSS (NM_133744)	90.0	NM_133744	72454.0	Mm.46488	NM_133744	ENSMUSG00000049305	Ccdc71	2600016J21Rik	coiled-coil domain containing 71	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100965293-4	chr7	100965191	100965391	+	917.43335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183168)	promoter-TSS (NM_183168)	-925.0	NM_183168	233571.0	Mm.235193	NM_183168	ENSMUSG00000048779	P2ry6	2010204J23Rik|P2Y6	pyrimidinergic receptor P2Y, G-protein coupled, 6	protein-coding	0.306016413009979	0.363443979558719	0.345447232546903	0.331043064464225	0.899989920129875	2.21718058556886	0.349479604684643	1.37937158810401	5.12120844719694	0.0025707066922958	0.0403356655111137
Merged-chr3-152105597-4	chr3	152105507	152105707	+	924.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016867, intron 4 of 5)	intron (NM_016867, intron 4 of 5)	60293.0	NM_016867	54120.0	Mm.97	NM_016867	ENSMUSG00000039131	Gipc2	2200002N01Rik|AU021850|Semcap2	GIPC PDZ domain containing family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-75184515-3	chr14	75184420	75184620	+	866.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008879, intron 2 of 16)	RMER1B|Other|Other	48095.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70796514-1	chr8	70796414	70796614	+	757.0	f1_c57bl6.idr	Intergenic	Intergenic	-1621.0	NR_106099	102466823.0		NR_106099	ENSMUSG00000099031	Mir7240	Gm27487|mmu-mir-7240	microRNA 7240	ncRNA	-0.175181900721273	-0.295727524345281	0.231841998885483	-0.0200599904692463	-0.0545575618262774	-0.294880312419455	-0.298648998119369	-0.301847899845301	-1.87541393576994	0.427265147030514	1
Merged-chr12-83928047-4	chr12	83927960	83928160	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6126.0	NR_073564	18222.0	Mm.4390	NM_010949	ENSMUSG00000021224	Numb	Nb	NUMB endocytic adaptor protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-62509467-2	chr4	62509367	62509567	+	560.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001276446, intron 11 of 11)	intron (NM_001276446, intron 11 of 11)	-7267.0	NM_024257	72748.0	Mm.41506	NM_024257	ENSMUSG00000038422	Hdhd3	2810435D12Rik	haloacid dehalogenase-like hydrolase domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34651640-2	chr17	34651580	34651780	+	866.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_017406, exon 10 of 18)	exon (NM_017406, exon 10 of 18)	4534.0	NM_017406	12915.0	Mm.4068	NM_017406	ENSMUSG00000015461	Atf6b	AA617266|ATF6beta|Creb-rp|Crebl1	activating transcription factor 6 beta	protein-coding	1.94762960335973	2.09418879438741	1.51438682608053	1.30874878085628	1.55771761733999	1.99936562225063	1.52477024996036	1.63009596550337	-0.219067406462923	0.835372356762207	0.998431161219273
Merged-chr18-67700542-4	chr18	67700443	67700643	+	928.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008977, intron 2 of 9)	intron (NM_008977, intron 2 of 9)	24078.0	NM_001127177	19255.0	Mm.260433	NM_008977	ENSMUSG00000024539	Ptpn2	AI325124|Ptpt|TC-PTP	protein tyrosine phosphatase, non-receptor type 2	protein-coding	0.75989942209766	0.614809802512807	2.02516313930387	0.58851894205008	1.06832321343423	0.618072905207123	1.32454068374544	1.13850468538908	-0.454902983284139	0.764976879993393	0.998431161219273
Merged-chr12-12316912-4	chr12	12316838	12317038	+	971.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146119, intron 2 of 11)	MLTR14|LTR|ERV1	54799.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	3.18297192800158	2.70582707280678	2.6160100956805	2.54326434004572	2.65742143598424	3.07994620577178	3.16367288116243	3.22469373580743	0.463191453262286	0.48415299861934	0.931207887927275
Merged-chr5-62711187-4	chr5	62711086	62711286	+	952.2708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178407, intron 7 of 32)	intron (NM_178407, intron 7 of 32)	54991.0	NM_178407	212285.0	Mm.244403	NM_178407	ENSMUSG00000037999	Arap2	Centd1|Gm148|mKIAA0580	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-89994090-3	chr16	89993973	89994173	+	759.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	-19374.0	NM_001145886	21844.0	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-106813395-4	chr13	106813408	106813608	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360897, intron 29 of 30)	intron (NM_001360897, intron 29 of 30)	123450.0	NM_001360897	76582.0	Mm.132208	NM_029665	ENSMUSG00000042590	Ipo11	1700081H05Rik|2510001A17Rik|AI314624|AW555235|E330021B14Rik|Ranbp11	importin 11	protein-coding	2.32918640342249	1.26039150505172	2.12808334716048	1.94126088183827	2.26737954688469	2.64374006870819	2.14523532562549	1.21297099882366	0.469072008577413	0.654514487078459	0.987655214718713
Merged-chr3-102724244-2	chr3	102724144	102724344	+	799.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_040588, intron 3 of 3)	intron (NR_040588, intron 3 of 3)	-10526.0	NM_027533	70747.0	Mm.27469	NM_027533	ENSMUSG00000027858	Tspan2	6330415F13Rik|B230119D02Rik|tspan-2	tetraspanin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-186445044-3	chr1	186444940	186445140	+	997.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	113641.0	NR_131124	320449.0	Mm.404477	NR_131124	ENSMUSG00000103690	A730004F24Rik	-	RIKEN cDNA A730004F24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-121605613-4	chr9	121605518	121605718	+	930.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040740, intron 3 of 3)	intron (NR_040740, intron 3 of 3)	18598.0	NR_040740	75384.0	Mm.445955	NR_040740	ENSMUSG00000084995	Lyzl4os	4930589B17Rik|4930596M17Rik	lysozyme-like 4, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99858986-4	chr7	99858864	99859064	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025668)	promoter-TSS (NM_025668)	-81.0	NM_025668	66624.0	Mm.30043	NM_025668	ENSMUSG00000035227	Spcs2	5730406I15Rik|AA408713|mKIAA0102	signal peptidase complex subunit 2 homolog (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-116301593-2	chr13	116301493	116301693	+	619.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021459, intron 5 of 5)	intron (NM_021459, intron 5 of 5)	8095.0	NM_021459	16392.0	Mm.42242	NM_021459	ENSMUSG00000042258	Isl1	-	ISL1 transcription factor, LIM/homeodomain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116421362-2	chr11	116421281	116421481	+	784.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8349.0	NM_027258	217340.0	Mm.426344	NM_027258	ENSMUSG00000052949	Rnf157	2610036E23Rik|A130073L17Rik|mKIAA1917	ring finger protein 157	protein-coding	2.89626326781532	2.78031280931656	2.53323937355941	3.05597623277145	2.60855556097973	4.00199058118004	3.17021485059597	3.71446823745178	1.0742130589321	0.0943494280225658	0.475550312581511
Merged-chr14-46822249-4	chr14	46822159	46822359	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022023)	promoter-TSS (NM_022023)	-17.0	NM_022023	63985.0	Mm.87312	NM_022023	ENSMUSG00000062014	Gmfb	3110001H22Rik|3110001O16Rik|AI851627|C79176|D14Ertd630e	glia maturation factor, beta	protein-coding	6.09474831907177	6.24541131201681	5.93951229557596	6.16466158218572	2.28925618082154	2.48770997795028	3.23652349186438	2.82229654220171	-4.30203398819432	3.46494710258692e-23	6.92873922280632e-20
Merged-chr8-34865698-4	chr8	34865566	34865766	+	803.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175091, intron 11 of 26)	intron (NM_175091, intron 11 of 26)	58056.0	NM_176933	319520.0	Mm.170276	NM_176933	ENSMUSG00000031530	Dusp4	2700078F24Rik|AI844617|BB104621|E130306H24Rik|MKP2	dual specificity phosphatase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131360954-4	chr1	131360851	131361051	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081011, intron 5 of 22)	intron (NM_001081011, intron 5 of 22)	-81388.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	4.11063212344387	4.47543139020271	4.81641202781538	4.84661575940046	4.14406517816901	4.62041824065324	4.67656095789686	5.12772713032503	0.117383840911808	0.762053305953404	0.998431161219273
Merged-chr2-151972456-2	chr2	151972356	151972556	+	682.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146127, intron 1 of 1)	L2a|LINE|L2	938.0	NM_001289151	73847.0	Mm.272444	NM_028666	ENSMUSG00000027459	Fam110a	1700008J10Rik|5430432M24Rik|AI747080	family with sequence similarity 110, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-48422183-3	chr14	48422100	48422300	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23923.0	NM_001310584	218989.0	Mm.85211	NM_172600	ENSMUSG00000036339	Tmem260	5930435P15|6720456H20Rik	transmembrane protein 260	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19352654-2	chr7	19352554	19352754	+	644.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_007948, exon 6 of 10)	exon (NM_007948, exon 6 of 10)	6829.0	NM_145822	70333.0	Mm.171370	NM_145822	ENSMUSG00000047649	Cd3eap	1190028F09|2610103M17Rik|ASE-1|Ase1|CAST|PAF49	CD3E antigen, epsilon polypeptide associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141216421-4	chr7	141216354	141216554	+	880.1416630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025886, intron 1 of 5)	intron (NM_025886, intron 1 of 5)	594.0	NM_025886	66985.0	Mm.21202	NM_025886	ENSMUSG00000038618	Rassf7	2400009B11Rik|AW210608	Ras association (RalGDS/AF-6) domain family (N-terminal) member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-118408189-4	chr5	118408064	118408264	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB7|LINE|L1	-152555.0	NM_001347445	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-91258112-3	chr1	91258052	91258252	+	655.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355764, intron 3 of 10)	intron (NM_001355764, intron 3 of 10)	7586.0	NM_001355764	67921.0	Mm.337238	NM_026454	ENSMUSG00000034343	Ube2f	2510010F15Rik|AI851109	ubiquitin-conjugating enzyme E2F (putative)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36734467-3	chr18	36734366	36734566	+	727.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028036)	promoter-TSS (NM_028036)	-604.0	NM_028036	71983.0	Mm.135188	NM_028036	ENSMUSG00000006850	Tmco6	2410015B03Rik	transmembrane and coiled-coil domains 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19471912-2	chr7	19471812	19472012	+	597.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-13418.0	NM_172279	232944.0	Mm.260504	NM_172279	ENSMUSG00000030397	Mark4	2410090P21Rik|C79806|Markl1	MAP/microtubule affinity regulating kinase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-113494887-2	chr2	113494787	113494987	+	796.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285459, intron 3 of 16)	intron (NM_001285459, intron 3 of 16)	53823.0	NM_001285459	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	1.53991644816186	1.62602360492965	1.44101886096159	0.911878153624619	1.55341960157418	1.63899062218402	1.45247192783982	0.913866687692922	0.0404857188336948	0.974795939910207	0.998431161219273
Merged-chr11-119905245-2	chr11	119905145	119905345	+	957.166626	f1_balb.idr|f1_c57bl6.idr	intron (NR_039557, intron 2 of 2)	intron (NR_039557, intron 2 of 2)	-8565.0	NM_001085498	208092.0	Mm.306673	NM_001085498	ENSMUSG00000025371	Chmp6	2400004G01Rik	charged multivesicular body protein 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-90468337-2	chr10	90468237	90468437	+	708.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359241, intron 12 of 25)	B1_Mus1|SINE|Alu	-107390.0	NM_001177397	77531.0	Mm.440605	NM_181398	ENSMUSG00000058589	Anks1b	AIDA-1|AIDA-1b|C030032C09Rik|E530015N03Rik|EB-1|Gm10937|Gm1555	ankyrin repeat and sterile alpha motif domain containing 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-4292839-2	chr8	4292739	4292939	+	975.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010485, intron 5 of 5)	intron (NM_010485, intron 5 of 5)	-16934.0	NM_011592	21856.0	Mm.195249	NM_011592	ENSMUSG00000002949	Timm44	0710005E20Rik|D8Ertd118e|Mimt44|Tim44	translocase of inner mitochondrial membrane 44	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150087295-4	chr4	150087206	150087406	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177366)	promoter-TSS (NM_177366)	-197.0	NM_177366	269604.0	Mm.219307	NM_177366	ENSMUSG00000047875	Gpr157	F730108M23Rik	G protein-coupled receptor 157	protein-coding	5.69210946042707	5.17153195397194	6.0906717122992	5.68909146894151	5.87275906717745	6.38188598765873	5.1275265236919	5.292460002886	0.0613098679603915	0.846396320298624	0.998431161219273
Merged-chr19-26853910-4	chr19	26853811	26854011	+	838.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30004.0	NR_045306	70942.0	Mm.411548	NR_045306	ENSMUSG00000093772	4931403E22Rik	-	RIKEN cDNA 4931403E22 gene	ncRNA	3.82824454971035	3.11680365894561	3.26737949170909	4.6473385497435	4.68319843964628	5.3078938817679	4.91979746561066	5.11207711396628	1.4551265014496	0.000933400330121843	0.0183991300560819
Merged-chr11-77404186-3	chr11	77404073	77404273	+	719.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177710, intron 4 of 14)	intron (NM_177710, intron 4 of 14)	55893.0	NM_001291190	237860.0	Mm.440381	NM_177710	ENSMUSG00000037926	Ssh2	SSH-2|SSH-2L|mSSH-2L	slingshot protein phosphatase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-74974236-4	chr18	74974143	74974343	+	974.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110446, intron 5 of 6)	ID_B1|SINE|B4	7304.0	NR_110446	71545.0	Mm.488094	NR_110446		9030625G05Rik	-	RIKEN cDNA 9030625G05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-88224255-4	chr1	88224154	88224354	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2766.0	NM_001281466	100040766.0	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	Heatr7b1	maestro heat-like repeat family member 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-145672862-2	chr3	145672762	145672962	+	666.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22877.0	NM_010516	16007.0	Mm.1231	NM_010516	ENSMUSG00000028195	Cyr61	AI325051|CCN1|Igfbp10	cysteine rich protein 61	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84221877-2	chr8	84221732	84221932	+	839.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172503, intron 10 of 13)	B1_Mus1|SINE|Alu	-12925.0	NR_037294	100526528.0		NR_037294	ENSMUSG00000105458	Mir3074-2	mir-3074-2|mmu-mir-3074-2	microRNA 3074-2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-117462252-4	chr6	117462173	117462373	+	960.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32962.0	NR_152214	100126203.0	Mm.217172	NR_152214		6820426E19Rik	Gm43983	RIKEN cDNA 6820426E19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-83651649-2	chr7	83651549	83651749	+	944.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360088, intron 14 of 18)	intron (NM_001360088, intron 14 of 18)	3846.0	NM_001360089	16170.0	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-39427465-2	chr8	39427362	39427562	+	882.0	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	129482.0	NR_044988	621335.0	Mm.208080	NR_044988	ENSMUSG00000109827	Gm6213	EG621335	predicted gene 6213	ncRNA	1.22254887158883	1.39994621461397	2.27551333485726	1.82860766402816	3.20838511354674	3.72034297228929	3.34776564143993	3.30973466728605	3.43606466305812	5.16206200398294e-05	0.00178656980549387
Merged-chr10-20058278-4	chr10	20058173	20058373	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008580, intron 9 of 29)	intron (NM_008580, intron 9 of 29)	-90647.0	NM_008635	17761.0	Mm.20928	NM_008635	ENSMUSG00000019996	Map7	E-MAP-115|MAP-7|Mtap7|R75000|mshi|mste|ste	microtubule-associated protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-79781610-2	chr10	79781510	79781710	+	749.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_031380, exon 5 of 5)	3' UTR (NM_031380, exon 5 of 5)	4336.0	NM_031380	83554.0	Mm.251710	NM_031380	ENSMUSG00000020325	Fstl3	E030038F23Rik|Flrg	follistatin-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4215360-5	chr19	4215220	4215420	+	939.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310039, intron 1 of 2)	CpG	931.0	NM_001310039	56708.0	Mm.347919	NM_019952	ENSMUSG00000040663	Clcf1	BSF-3|Bsf3|CLC|NNT-1	cardiotrophin-like cytokine factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-9944918-2	chr1	9944771	9944971	+	792.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_024067)	promoter-TSS (NR_024067)	-753.0	NR_024067	73824.0	Mm.28311	NR_024067	ENSMUSG00000098234	Snhg6	1110008H02Rik	small nucleolar RNA host gene 6	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-11773763-2	chr18	11773667	11773867	+	655.0	f0_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65507.0	NM_001146287	63955.0	Mm.40717	NM_022021	ENSMUSG00000040957	Cables1	Cables|ik3-1	CDK5 and Abl enzyme substrate 1	protein-coding	3.0668506841816	2.64564571247721	2.77328046859968	2.05556844122924	1.78848166001818	2.5327443817067	1.71634888761003	3.51674506515866	-0.107506560465357	0.89998246058596	0.998431161219273
Merged-chr9-16267523-1	chr9	16267423	16267623	+	550.0	f0_balb.idr	intron (NM_001080814, intron 1 of 24)	intron (NM_001080814, intron 1 of 24)	110708.0	NM_001080814	270120.0	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT atypical cadherin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-29346728-4	chr2	29346613	29346813	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026896)	promoter-TSS (NM_026896)	-97.0	NM_026896	68975.0	Mm.330109	NM_026896	ENSMUSG00000026799	Med27	1500015J03Rik|2310042P07Rik|AA682045|Crsp8|D2Ertd434e	mediator complex subunit 27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-136087505-4	chr5	136087429	136087629	+	828.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039103, intron 1 of 19)	intron (NM_001039103, intron 1 of 19)	3613.0	NM_001039103	54153.0	Mm.290655	NM_133914	ENSMUSG00000004952	Rasa4	AA793972|AW112107|BB079060|CAPRI|GAPL	RAS p21 protein activator 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-126753051-2	chr4	126752951	126753151	+	774.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355413)	promoter-TSS (NM_001355413)	378.0	NM_011986	26562.0	Mm.206206	NM_011986	ENSMUSG00000028833	Ncdn	AU042419|MMS10-AE|Ms10ae|mKIAA0607|norbin	neurochondrin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30132125-3	chr2	30132011	30132211	+	879.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1635.0	NM_146252	70296.0	Mm.19172	NM_146252	ENSMUSG00000039678	Tbc1d13	2600014A06Rik|BC025586	TBC1 domain family, member 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-136742516-3	chr6	136742387	136742587	+	968.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145067, intron 10 of 25)	intron (NM_145067, intron 10 of 25)	39255.0	NM_145067	14917.0	Mm.222729	NM_145067	ENSMUSG00000042638	Gucy2c	AI893437|GC-C|Gcc	guanylate cyclase 2c	protein-coding	2.60215754176842	2.35447229799906	2.43724083133234	2.36726831317074	3.51276230722111	3.48380105489375	2.95283254242393	2.95693096063463	1.52108126734232	0.0237619311097857	0.201736131548988
Merged-chr1-105991352-5	chr1	105991300	105991500	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001122676, exon 1 of 14)	exon (NM_001122676, exon 1 of 14)	994.0	NM_001122675	227449.0	Mm.210188	NM_001122675	ENSMUSG00000038866	Zcchc2	9930114B20Rik|AW212015	zinc finger, CCHC domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-88862022-4	chr15	88861926	88862126	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145478)	promoter-TSS (NM_145478)	-168.0	NM_145478	223775.0	Mm.400129	NM_145478	ENSMUSG00000035828	Pim3	BC026639|Kid1	proviral integration site 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115559415-4	chr5	115559297	115559497	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007475)	promoter-TSS (NM_007475)	-70.0	NM_007475	11837.0	Mm.5286	NM_007475	ENSMUSG00000067274	Rplp0	36B4|Arbp|L10E	ribosomal protein, large, P0	protein-coding	4.57958215938147	4.69313998239214	2.85090866499172	4.76247348561237	4.68267107245718	3.86806886500322	5.0905094717555	4.45016282410813	0.238885103438765	0.617572687944935	0.977517868708383
Merged-chr2-165855800-4	chr2	165855709	165855909	+	975.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252587, intron 2 of 11)	intron (NM_001252587, intron 2 of 11)	2364.0	NM_001252585	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-91191436-4	chr15	91191344	91191544	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001358967, exon 1 of 10)	exon (NM_001358967, exon 1 of 10)	563.0	NM_011994	26874.0	Mm.295456	NM_011994	ENSMUSG00000055782	Abcd2	ABC39|ALDL1|ALDR|ALDRP	ATP-binding cassette, sub-family D (ALD), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69555433-2	chr11	69555333	69555533	+	666.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007911, exon 5 of 5)	3' UTR (NM_007911, exon 5 of 5)	4804.0	NM_007911	13643.0	Mm.249637	NM_007911	ENSMUSG00000003934	Efnb3	EFL-6|ELF-3|Elk-L3|Epl8|LERK-8|NLERK-2	ephrin B3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-50834164-3	chr9	50834045	50834245	+	801.518494	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045601, intron 13 of 13)	intron (NR_045601, intron 13 of 13)	-22779.0	NM_001034085	73699.0	Mm.7726	NM_028614	ENSMUSG00000032058	Ppp2r1b	2410091N08Rik|AI790395	protein phosphatase 2, regulatory subunit A, beta	protein-coding	2.6652421001474	2.16452315067342	3.03833441557968	2.03670827583423	1.79056177560744	2.60909215177794	2.26470095373232	2.82105571935428	-0.247286400605738	0.764837649006768	0.998431161219273
Merged-chr9-45095311-3	chr9	45095213	45095413	+	978.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005421, intron 6 of 10)	intron (NM_001005421, intron 6 of 10)	16130.0	NM_001005421	270152.0	Mm.190461	NM_001005421	ENSMUSG00000048534	Jaml	AMICA|Amica1|Crea7|Gm638	junction adhesion molecule like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-25284123-2	chr10	25284023	25284223	+	645.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_018747, intron 2 of 7)	intron (NM_018747, intron 2 of 7)	15040.0	NM_018747	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-75940981-4	chr15	75940876	75941076	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030199)	promoter-TSS (NM_030199)	24.0	NM_030199	78834.0	Mm.273264	NM_030199	ENSMUSG00000050846	Zfp623	2610029D06Rik|AI847036	zinc finger protein 623	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111699463-4	chr12	111699377	111699577	+	953.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13476.0	NM_001324481	70369.0	Mm.44239	NM_027404	ENSMUSG00000049792	Bag5	1600025G07Rik|4930405J06Rik|Bag-5	BCL2-associated athanogene 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52614381-2	chr13	52614281	52614481	+	593.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_011518, intron 3 of 13)	intron (NM_011518, intron 3 of 13)	17499.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-60870693-2	chr2	60870593	60870793	+	620.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	10745.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-24333000-2	chr10	24332900	24333100	+	677.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	109483.0	NM_021509	59012.0	Mm.285934	NM_021509	ENSMUSG00000020000	Moxd1	3230402N08Rik|MNCb-5203	monooxygenase, DBH-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-72867602-5	chr5	72867491	72867691	+	808.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013689, intron 1 of 17)	intron (NM_013689, intron 1 of 17)	857.0	NM_001113461	21682.0	Mm.319581	NM_013689	ENSMUSG00000029217	Tec	-	tec protein tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-46120108-4	chr9	46120038	46120238	+	991.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027498, intron 1 of 24)	intron (NM_027498, intron 1 of 24)	107318.0	NM_027498	70661.0	Mm.219459	NM_027498	ENSMUSG00000034135	Sik3	5730525O22Rik|9030204A07Rik|AI447252|AI846254|AI849445|Qsk|SIK-3|mKIAA0999	SIK family kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-38303502-2	chr15	38303402	38303602	+	584.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F2|SINE|Alu	-2791.0	NM_001289471	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-85671301-3	chr11	85671192	85671392	+	820.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138681, intron 24 of 25)	intron (NM_138681, intron 24 of 25)	48452.0	NR_045875	71489.0	Mm.442482	NR_045875	ENSMUSG00000086199	Bcas3os1	8430403D17Rik	breast carcinoma amplified sequence 3, opposite strand 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-14635463-4	chr19	14635378	14635578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37295.0	NM_001302947	21888.0	Mm.103638	NM_011600	ENSMUSG00000024642	Tle4	5730411M05Rik|AA792082|Bce-1|Bce1|ESTM13|ESTM14|Grg4|X83332|X83333|grg-4	transducin-like enhancer of split 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34649843-2	chr17	34649756	34649956	+	888.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_017406, intron 5 of 17)	intron (NM_017406, intron 5 of 17)	2710.0	NM_017406	12915.0	Mm.4068	NM_017406	ENSMUSG00000015461	Atf6b	AA617266|ATF6beta|Creb-rp|Crebl1	activating transcription factor 6 beta	protein-coding	2.05974143171249	2.56711971455347	1.765282697996	3.18238088705061	1.44683750683712	2.19847009203907	1.56017013822995	2.60599686450196	-1.03198895063301	0.272522059518767	0.775672861799659
Merged-chr12-85702834-2	chr12	85702734	85702934	+	747.458374	f1_balb.idr|f1_c57bl6.idr	intron (NM_016767, intron 2 of 2)	intron (NM_016767, intron 2 of 2)	16114.0	NM_016767	53314.0	Mm.6672	NM_016767	ENSMUSG00000034266	Batf	B-ATF|SFA-2	basic leucine zipper transcription factor, ATF-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-84681501-1	chr18	84681401	84681601	+	541.0	f0_balb.idr	intron (NM_023149, intron 2 of 11)	intron (NM_023149, intron 2 of 11)	558.0	NM_001289531	66054.0	Mm.29646	NM_023149	ENSMUSG00000024644	Cndp2	0610010E05Rik|C76600|Cn2|Dip-2|Pep-1|Pep1	CNDP dipeptidase 2 (metallopeptidase M20 family)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-54924357-2	chr15	54924257	54924457	+	798.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-4211.0	NM_001285994	18606.0	Mm.250256	NM_015744	ENSMUSG00000022425	Enpp2	ATX|E-NPP 2|Npps2|PD-Ialpha|Pdnp2|lysoPLD	ectonucleotide pyrophosphatase/phosphodiesterase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-36723267-2	chr5	36723167	36723367	+	547.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25412.0	NM_133724	117197.0	Mm.46744	NM_133724	ENSMUSG00000060708	Bloc1s4	2610101N07Rik|Blos4|Cno	biogenesis of lysosomal organelles complex-1, subunit 4, cappuccino	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-40659699-4	chr19	40659610	40659810	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009848)	promoter-TSS (NM_009848)	-60.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	4.35337254991719	4.17207389748226	3.80301985498817	4.11495895710044	4.58103660673842	4.33818766996732	4.91756272696799	4.89048655191176	0.738430698290424	0.0578268830699765	0.356041879784593
Merged-chr10-8868807-2	chr10	8868707	8868907	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 1 of 19)	intron (NM_175155, intron 1 of 19)	17263.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-9188782-2	chr13	9188689	9188889	+	660.333374	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-87736.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-79853447-6	chr10	79853215	79853415	+	943.6555789999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_029447, exon 1 of 1)	non-coding (NR_029447, exon 1 of 1)	-1117.0	NM_001077363	19205.0	Mm.265610	NM_008956	ENSMUSG00000006498	Ptbp1	AA407203|AL033359|HNRPI|PTB-1|PTB2|PTB3|PTB4|Ptb|pPTB	polypyrimidine tract binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-117129327-2	chr4	117129232	117129432	+	625.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_175030)	TTS (NM_175030)	2519.0	NM_175030	242646.0	Mm.358914	NM_175030	ENSMUSG00000047671	Tctex1d4	4833401D15Rik	Tctex1 domain containing 4	protein-coding	-0.118453233031322	0.893397481635627	0.402301580056061	-0.109891043500063	-0.117172961211196	0.12439554605549	-0.103328154387886	-0.108995944484393	-3.21333475780905	0.15090461494952	1
Merged-chr16-22119720-4	chr16	22119648	22119848	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183029, intron 2 of 15)	intron (NM_183029, intron 2 of 15)	43551.0	NM_183029	319765.0	Mm.489442	NM_183029	ENSMUSG00000033581	Igf2bp2	C330012H03Rik|IMP-2|Imp2|Neilsen	insulin-like growth factor 2 mRNA binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-47676041-1	chr8	47675941	47676141	+	1000.0	f0_balb.idr	promoter-TSS (NM_023503)	promoter-TSS (NM_023503)	-882.0	NM_023503	69260.0	Mm.430733	NM_023503	ENSMUSG00000063049	Ing2	2810011M06Rik|Ing1l|Ing2b|P33ING2	inhibitor of growth family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127530966-2	chr10	127530866	127531066	+	846.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_183297, intron 1 of 1)	intron (NM_183297, intron 1 of 1)	3593.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-92400359-2	chr17	92400259	92400459	+	666.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	-798658.0	NM_001315503	11516.0	Mm.3407	NM_009625	ENSMUSG00000024256	Adcyap1	PACAP	adenylate cyclase activating polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-75247056-2	chr18	75246956	75247156	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027727, intron 16 of 16)	MTD|LTR|ERVL-MaLR	50261.0	NR_045394	100503117.0	Mm.250517	NR_045393	ENSMUSG00000102047	2010010A06Rik	5033420E22Rik	RIKEN cDNA 2010010A06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33382558-2	chr16	33382458	33382658	+	979.2000119999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358570, intron 1 of 8)	intron (NM_001358570, intron 1 of 8)	1256.0	NM_001358570	22661.0	Mm.392667	NM_011749	ENSMUSG00000022811	Zfp148	2210405J08Rik|AI480666|AW045217|BERF-1|BFCOL1|ZBP-89|Znf148	zinc finger protein 148	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-97140222-4	chr15	97140120	97140320	+	830.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	27024.0	NR_155278	102635594.0	Mm.392594	NR_155278	ENSMUSG00000116295	Gm32885	-	predicted gene, 32885	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46072315-3	chr8	46072255	46072455	+	584.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207213, intron 5 of 17)	MTD|LTR|ERVL-MaLR	51791.0	NM_207213	102141.0	Mm.267258	NM_207213	ENSMUSG00000038291	Snx25	AI661919|Gm1699|Gm173|Sbbi31	sorting nexin 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-33994425-3	chr1	33994340	33994540	+	856.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276764, intron 3 of 102)	intron (NM_001276764, intron 3 of 102)	-17385.0	NM_133833	13518.0	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-86882021-2	chr12	86881877	86882077	+	674.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_145836, exon 1 of 1)	exon (NM_145836, exon 1 of 1)	2837.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-57785955-4	chr10	57785784	57785984	+	983.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021272, intron 2 of 3)	intron (NM_021272, intron 2 of 3)	961.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-143050393-4	chr6	143050263	143050463	+	931.724976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362117, intron 11 of 26)	intron (NM_001362117, intron 11 of 26)	49789.0	NM_001362118	74741.0	Mm.130260	NM_029081	ENSMUSG00000030279	C2cd5	5730419I09Rik|C030008B15Rik|CDP138	C2 calcium-dependent domain containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-73467270-4	chr2	73467124	73467324	+	646.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	-13335.0	NM_001289722	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171847139-1	chr1	171847039	171847239	+	830.0	f1_balb.idr	intron (NM_001289470, intron 2 of 8)	intron (NM_001289470, intron 2 of 8)	7442.0	NM_013489	12523.0	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	1.5912056534415	0.874592884435895	0.859539647301421	0.847714833389476	1.69159033388465	1.460388969117	1.761119168778	1.48724794492593	1.95411426451066	0.15470768639611	0.610069793551649
Merged-chr11-19493444-5	chr11	19493305	19493505	+	969.753357	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11B|LTR|ERVK	428130.0	NR_046037	74059.0	Mm.292321	NR_046037	ENSMUSG00000086025	4933406G16Rik	-	RIKEN cDNA 4933406G16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-84801124-2	chr2	84801031	84801231	+	802.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019949, intron 1 of 3)	intron (NM_019949, intron 1 of 3)	2303.0	NM_019949	56791.0	Mm.38261	NM_019949	ENSMUSG00000027078	Ube2l6	2810489I21Rik|RIG-B|UBCH8|Ubce8|Ubcm8	ubiquitin-conjugating enzyme E2L 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111674804-2	chr12	111674703	111674903	+	767.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	-2465.0	NM_021273	12709.0	Mm.16831	NM_021273	ENSMUSG00000001270	Ckb	B-CK|Bck|CPK-B|Ck-3|Ck3|Ckbb	creatine kinase, brain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-116130952-5	chr3	116130891	116131091	+	951.080017	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1303.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-115210913-2	chr13	115210813	115211013	+	944.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-108949.0	NM_001033228	109700.0	Mm.317280	NM_001033228	ENSMUSG00000042284	Itga1	CD49A|E130012M19Rik|Vla1	integrin alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-32389210-4	chr19	32389120	32389320	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033198)	promoter-TSS (NR_033198)	4.0	NR_033198	67188.0	Mm.391160	NR_033198	ENSMUSG00000097787	2700046G09Rik	-	RIKEN cDNA 2700046G09 gene	ncRNA	5.99440084746908	5.1861513667111	5.61768604028782	5.70423712171119	6.32085702917926	5.48418499844658	6.44663411034866	5.75100261123295	0.441213814882068	0.121259311800327	0.546643694128403
Merged-chr5-66169252-3	chr5	66169183	66169383	+	651.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040695, intron 2 of 2)	RSINE1|SINE|B4	-17329.0	NM_001127382	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	1.0775831523063	2.09930624524991	0.951376224342111	1.11585048174416	1.22340851511796	1.51682702471455	0.954042789680309	2.14846354875907	0.479763484103983	0.721012466544212	0.998431161219273
Merged-chr4-148497824-3	chr4	148497732	148497932	+	865.361084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039554, intron 2 of 4)	intron (NM_001039554, intron 2 of 4)	2630.0	NM_001039554	654812.0	Mm.388929	NM_001039554	ENSMUSG00000028989	Angptl7	-	angiopoietin-like 7	protein-coding	1.30709562907149	2.38023660538262	1.15136782567521	1.12833536305366	2.12254964372489	2.39906196541871	2.41161314271909	2.23765354105279	1.77751289239076	0.100682146256758	0.493995797759782
Merged-chr15-95889882-2	chr15	95889782	95889982	+	631.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 2 of 19)	ORR1D1|LTR|ERVL-MaLR	-59810.0	NR_155276	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-36347132-4	chr8	36347024	36347224	+	980.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-97608.0	NM_001081150	244421.0	Mm.324032	NM_001081150	ENSMUSG00000039633	Lonrf1	-	LON peptidase N-terminal domain and ring finger 1	protein-coding	4.33404289593336	4.91513131523173	4.67565812538334	4.80551041884461	4.88966311016202	4.70743671243322	4.61254182732832	5.22102643226854	0.232885074465872	0.503640500327357	0.939787919021146
Merged-chr11-44416992-1	chr11	44416892	44417092	+	597.0	f1_c57bl6.idr	Intergenic	Intergenic	16929.0	NM_001303244	16160.0	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	1.08934472211557	0.949768815216061	2.6422133232725	1.64220732792791	1.56188967262131	1.62308744305142	0.9319530244254	1.77755473459771	-0.781857733921743	0.527375541593577	0.948839578239191
Merged-chr7-90039667-4	chr7	90039578	90039778	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110365, intron 3 of 5)	intron (NR_110365, intron 3 of 5)	10519.0	NR_110364	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19936200-4	chr7	19936101	19936301	+	871.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR53_Mm|LTR|ERVK	14542.0	NM_027308	70080.0	Mm.98583	NM_027308	ENSMUSG00000040498	Igsf23	2210010C17Rik	immunoglobulin superfamily, member 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-121009672-4	chr5	121009558	121009758	+	755.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011286)	promoter-TSS (NM_011286)	-120.0	NM_011286	19894.0	Mm.181166	NM_011286	ENSMUSG00000029608	Rph3a	2900002P20Rik|AU022689|AW108370	rabphilin 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-11704351-3	chr4	11704252	11704452	+	770.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010276)	promoter-TSS (NM_010276)	-95.0	NM_010276	14579.0	Mm.247486	NM_010276	ENSMUSG00000028214	Gem	AV020497	GTP binding protein (gene overexpressed in skeletal muscle)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-131350782-2	chr3	131350682	131350882	+	801.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB7|LINE|L1	-5859.0	NM_028943	74442.0	Mm.273360	NM_028943	ENSMUSG00000050931	Sgms2	4933405A16Rik|5133401H06Rik|AI854299	sphingomyelin synthase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-116557589-4	chr4	116557498	116557698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029868)	promoter-TSS (NM_029868)	-129.0	NM_029868	77110.0	Mm.41715	NM_029868	ENSMUSG00000034042	Gpbp1l1	5330440M15Rik|BC002292	GC-rich promoter binding protein 1-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117373233-2	chr10	117373133	117373333	+	999.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013391, intron 1 of 9)	intron (NM_001013391, intron 1 of 9)	3740.0	NM_001013391	432508.0	Mm.478881	NM_001013391	ENSMUSG00000055531	Cpsf6	4733401N12Rik|AI256641|CFIM|CFIM68|HPBRII-4|HPBRII-7	cleavage and polyadenylation specific factor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-66164746-2	chr5	66164646	66164846	+	680.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12792.0	NM_001127382	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-37312492-4	chr3	37312328	37312528	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001255992)	promoter-TSS (NM_001255992)	18.0	NM_145825	207175.0	Mm.344708	NM_145825	ENSMUSG00000045031	Cetn4	-	centrin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141618012-4	chr4	141617907	141618107	+	904.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001013780)	TTS (NM_001013780)	626.0	NM_145987	213989.0	Mm.34891	NM_145987	ENSMUSG00000043085	Tmem82	-	transmembrane protein 82	protein-coding	2.06987423012016	2.32863437881021	2.6656566378831	2.1837030903855	2.08738948478423	3.02294700387882	1.58519524756644	1.54199550516927	-0.237126248097958	0.797300649010552	0.998431161219273
Merged-chr1-62750564-4	chr1	62750453	62750653	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077404, intron 7 of 16)	intron (NM_001077404, intron 7 of 16)	44179.0	NR_040601	74992.0	Mm.401979	NR_040601		4930487H11Rik	-	RIKEN cDNA 4930487H11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80081361-3	chr7	80081228	80081428	+	894.31665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001146000, exon 2 of 6)	exon (NM_001146000, exon 2 of 6)	-6071.0	NR_045695	100859962.0	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	0.94065286860168	1.60316212446879	0.639672221529867	0.997965798287103	1.08132628056544	0.655780509033054	0.642599762813616	1.74063490532148	0.107700226259868	0.943402146998095	0.998431161219273
Merged-chr13-114299854-2	chr13	114299754	114299954	+	605.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010887, intron 4 of 4)	intron (NM_010887, intron 4 of 4)	88240.0	NM_010887	17993.0	Mm.253142	NM_010887	ENSMUSG00000021764	Ndufs4	6720411N02Rik|C1-18k	NADH dehydrogenase (ubiquinone) Fe-S protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-48168807-2	chr18	48168707	48168907	+	616.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1C|Other|Other	123472.0	NM_001025388	433182.0	Mm.70666	NM_001025388	ENSMUSG00000059040	Eno1b	EG433182|Eno1|Gm5506	enolase 1B, retrotransposed	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-61198708-3	chr19	61198609	61198809	+	645.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	-22400.0	NM_001177513	633057.0	Mm.426097	NM_001177513	ENSMUSG00000094649	Gm7102	EG633057	predicted gene 7102	protein-coding	0.937506579500446	1.27639943349636	2.28542134647075	1.9361430000091	0.94250420743492	1.28523234912885	2.30543521653574	1.94734560094249	0.0364566292805261	0.976645480663277	0.998431161219273
Merged-chr9-59731297-4	chr9	59731216	59731416	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19333.0	NM_001172069	71599.0	Mm.279070	NM_027838	ENSMUSG00000051705	Senp8	9130010J17Rik|AU020827|Den1|Nedp1|Prsc2	SUMO/sentrin specific peptidase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-53424841-4	chr19	53424720	53424920	+	977.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34186.0	NM_172429	76479.0	Mm.313687	NM_172429	ENSMUSG00000025024	Smndc1	-	survival motor neuron domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-38651666-4	chr15	38651568	38651768	+	939.283325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10B|LTR|ERVL	-10236.0	NM_025494	66335.0	Mm.276618	NM_025494	ENSMUSG00000022295	Atp6v1c1	1700025B18Rik|U13839	ATPase, H+ transporting, lysosomal V1 subunit C1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91380455-3	chr16	91380384	91380584	+	986.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347258, intron 1 of 7)	intron (NM_001347258, intron 1 of 7)	7701.0	NM_001110498	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-88254806-2	chr1	88254706	88254906	+	786.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001281466, intron 31 of 41)	intron (NM_001281466, intron 31 of 41)	14602.0	NR_040291	78605.0	Mm.384762	NR_040291		6430706D22Rik	-	RIKEN cDNA 6430706D22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56029778-2	chr17	56029678	56029878	+	816.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013664, intron 1 of 9)	intron (NM_013664, intron 1 of 9)	6859.0	NM_013664	20405.0	Mm.1773	NM_013664	ENSMUSG00000003200	Sh3gl1	C77078|EEN|SH3P8|Sh3d2b	SH3-domain GRB2-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90444796-2	chr2	90444696	90444896	+	675.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 20 of 23)	intron (NM_008982, intron 20 of 23)	34378.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-21915646-3	chr16	21915546	21915746	+	730.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172821, intron 9 of 12)	Lx8|LINE|L1	23677.0	NM_172821	71751.0	Mm.420837	NM_172821	ENSMUSG00000033618	Map3k13	C130026N12Rik|LZK	mitogen-activated protein kinase kinase kinase 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-11455363-4	chr4	11455255	11455455	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30603.0	NM_001081183	66185.0	Mm.331487	NM_001081183	ENSMUSG00000040720	Virma	1110037F02Rik|4930422M05Rik|Kiaa1429|mKIAA1429	vir like m6A methyltransferase associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-7781010-4	chr10	7780902	7781102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346750)	promoter-TSS (NM_001346750)	-85.0	NM_001346750	215751.0	Mm.471825	NM_145418	ENSMUSG00000040006	Ginm1	AA589616	glycoprotein integral membrane 1	protein-coding	4.91728710577952	4.01400911820972	5.1172656998875	4.38118759897206	4.77840340265582	3.56322507238446	4.37377668541081	3.8614565889766	-0.563493571271056	0.203002210365295	0.689350285285913
Merged-chr1-55525735-2	chr1	55525634	55525834	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114663, intron 1 of 5)	MTC|LTR|ERVL-MaLR	119788.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	3.79418940943229	3.13339735065914	3.70708231223555	4.0904349205547	3.87649176997282	3.15753976405373	3.73529376198983	4.10972067008461	0.0579123595998259	0.910058702955508	0.998431161219273
Merged-chr4-141347636-2	chr4	141347536	141347736	+	729.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-20556.0	NM_001085513	277743.0	Mm.294614	NM_001085513	ENSMUSG00000006218	Fam131c	Gm693	family with sequence similarity 131, member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135946433-4	chr4	135946342	135946542	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008254)	promoter-TSS (NM_008254)	-6.0	NM_008254	15356.0	Mm.482102	NM_008254	ENSMUSG00000028672	Hmgcl	AW476067|HL	3-hydroxy-3-methylglutaryl-Coenzyme A lyase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-90089125-4	chr13	90089025	90089225	+	983.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025335)	promoter-TSS (NM_025335)	483.0	NM_028012	108138.0	Mm.37531	NM_028012	ENSMUSG00000021615	Xrcc4	2310057B22Rik|AW413319|AW545101	X-ray repair complementing defective repair in Chinese hamster cells 4	protein-coding	2.00919739869496	2.60227564164756	2.94284293864685	1.07226434462653	1.91303989611035	1.13821258936174	2.33204107923194	1.07693006700511	-1.40470500127159	0.223342144232605	0.714791840691861
Merged-chr2-128422867-4	chr2	128422771	128422971	+	952.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028591, intron 1 of 1)	B3A|SINE|B2	6480.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-50588184-4	chr17	50588094	50588294	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013880, intron 1 of 5)	MTD|LTR|ERVL-MaLR	78647.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-79659083-4	chr15	79658967	79659167	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029407)	promoter-TSS (NM_029407)	-111.0	NM_029407	75729.0	Mm.78946	NM_029407	ENSMUSG00000042564	Fam227a	4933432B09Rik	family with sequence similarity 227, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-61329816-2	chr19	61329716	61329916	+	659.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVB7_3-LTR_MM|LTR|ERVK	-101398.0	NM_009970	12982.0	Mm.287228	NM_009970	ENSMUSG00000059326	Csf2ra	CD116|Csfgmra|GM-CSF-Ra|GM-CSFR	colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-91749012-2	chr12	91748912	91749112	+	705.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 1 of 6)	B1_Mur4|SINE|Alu	37424.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-153570745-2	chr3	153570645	153570845	+	594.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011372, intron 1 of 4)	MTD|LTR|ERVL-MaLR	154388.0	NM_011372	20447.0	Mm.296453	NM_011372	ENSMUSG00000052544	St6galnac3	Siat7c	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-37770239-2	chr4	37770139	37770339	+	601.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	520836.0	NR_151605	102636890.0	Mm.109154	NR_151605	ENSMUSG00000086026	Gm12374	-	predicted gene 12374	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-34906286-2	chr6	34906186	34906386	+	974.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013366, intron 4 of 14)	B3A|SINE|B2	4545.0	NM_001013366	101240.0	Mm.152120	NM_001013366	ENSMUSG00000058486	Wdr91	9530020G05Rik|AI987683|AU018665	WD repeat domain 91	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167944328-3	chr2	167944197	167944397	+	747.099976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011201, intron 1 of 8)	intron (NM_011201, intron 1 of 8)	11970.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105441670-2	chr8	105441570	105441770	+	793.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033371, intron 2 of 10)	intron (NM_001033371, intron 2 of 10)	14030.0	NM_001170789	270091.0	Mm.212709	NM_001033371	ENSMUSG00000054320	Lrrc36	BC036564	leucine rich repeat containing 36	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-112615564-2	chr12	112615464	112615664	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_198411)	TTS (NM_198411)	-4483.0	NM_007421	11565.0	Mm.3440	NM_007421	ENSMUSG00000011148	Adssl1	AI528595|Adss|Adss1	adenylosuccinate synthetase like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-105747374-4	chr1	105747215	105747415	+	965.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173187, intron 26 of 28)	intron (NM_173187, intron 26 of 28)	-33408.0	NM_009399	21934.0	Mm.6251	NM_009399	ENSMUSG00000026321	Tnfrsf11a	Ly109|ODFR|OFE|Rank|TRANCE-R|mRANK	tumor necrosis factor receptor superfamily, member 11a, NFKB activator	protein-coding	2.56185781667188	1.97920574116777	2.79164195181952	2.93448714911327	3.06893567365365	3.67184758951617	3.40770709542514	3.89530167182371	1.57978066213718	0.014013896392464	0.138582888141745
Merged-chr11-118184072-2	chr11	118183972	118184172	+	557.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001112700, intron 6 of 12)	intron (NM_001112700, intron 6 of 12)	28670.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-26639084-2	chr11	26638998	26639198	+	731.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-45178.0	NM_001252447	69922.0	Mm.285351	NM_027260	ENSMUSG00000064090	Vrk2	2810003O05Rik|AI447698	vaccinia related kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-29624136-4	chr2	29624029	29624229	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054050, intron 1 of 23)	intron (NM_054050, intron 1 of 23)	4409.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-108061546-4	chr3	108061456	108061656	+	960.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16697.0	NM_001160411	14865.0	Mm.31203	NM_026764	ENSMUSG00000027890	Gstm4	1110004G14Rik|GSTM7-7|Gstb-4|Gstb4	glutathione S-transferase, mu 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120067620-2	chr11	120067520	120067720	+	674.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009734, intron 18 of 25)	intron (NM_009734, intron 18 of 25)	19207.0	NM_009734	12009.0	Mm.2556	NM_009734	ENSMUSG00000039781	Cep131	AZ1|Azi|Azi1	centrosomal protein 131	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-75796556-4	chr7	75796423	75796623	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51815.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-92171135-1	chr17	92171035	92171235	+	599.0	f1_balb.idr	Intergenic	Intergenic	-1027882.0	NM_001315503	11516.0	Mm.3407	NM_009625	ENSMUSG00000024256	Adcyap1	PACAP	adenylate cyclase activating polypeptide 1	protein-coding	-1.26550836321643	-1.23538490674683	-1.24673049817958	-1.25605010478787	-1.26497736998827	-0.580802564315158	-1.24416210496749	-1.25438189966081	2.74054745292391	0.426663645876262	1
Merged-chr16-14387630-1	chr16	14387530	14387730	+	770.0	f0_balb.idr	intron (NM_008576, intron 1 of 30)	B1_Mus2|SINE|Alu	26072.0	NM_008576	17250.0	Mm.196634	NM_008576	ENSMUSG00000023088	Abcc1	Abcc1a|Abcc1b|MRP|Mdrap|Mrp1	ATP-binding cassette, sub-family C (CFTR/MRP), member 1	protein-coding	0.887995004229951	0.21793811121325	0.210300083759581	0.535699377371056	0.357138822847942	1.10686336768804	0.21198972506373	0.205405656121838	0.236527241026946	0.902579340032524	1
Merged-chr17-73897010-2	chr17	73896910	73897110	+	731.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_011723, exon 30 of 36)	exon (NM_011723, exon 30 of 36)	53186.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-45409539-4	chr4	45409439	45409639	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001009949)	promoter-TSS (NM_001009949)	-773.0	NM_001009949	230125.0	Mm.260210	NM_001009949	ENSMUSG00000045973	Slc25a51	9130208E07Rik|D130005A03Rik|Gm138|Mcart1	solute carrier family 25, member 51	protein-coding	5.9203090095711	5.04591946619267	5.40557926869484	5.80168052660303	6.09492618118847	5.1682863246851	6.01531096218627	6.15808667432747	0.361706232451419	0.219158580724121	0.710517864987671
Merged-chr18-75600876-1	chr18	75600776	75600976	+	833.333313	f1_c57bl6.idr	intron (NM_201354, intron 6 of 11)	intron (NM_201354, intron 6 of 11)	86231.0	NR_045879	100038353.0	Mm.440724	NR_045879	ENSMUSG00000097712	Gm10532	-	predicted gene 10532	ncRNA	0.296323846420633	0.922735536774544	0.484926993363184	0.726282499215805	0.297580785046663	0.674502754728065	0.311313586516727	0.732254581543661	-0.695127791304259	0.700844404215551	1
Merged-chr13-51645667-4	chr13	51645565	51645765	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025415, intron 1 of 2)	CpG	433.0	NM_025415	66197.0	Mm.222228	NM_025415	ENSMUSG00000062248	Cks2	1110038L14Rik|CKSHS2	CDC28 protein kinase regulatory subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-98805057-4	chr7	98804958	98805158	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30054.0	NM_001285794	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	6.64963724209925	6.74939089855936	7.18508807582537	7.01473337569478	6.82593284960583	6.33112414887958	6.68635516259389	6.75752853212666	-0.260777219995061	0.183062025078325	0.657952330718128
Merged-chr2-38346556-4	chr2	38346470	38346670	+	793.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290646, intron 1 of 4)	intron (NM_001290646, intron 1 of 4)	-4738.0	NM_010710	16870.0	Mm.142856	NM_010710	ENSMUSG00000000247	Lhx2	LH2A|Lh-2|Lim2|ap|apterous	LIM homeobox protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-87634981-4	chr16	87634920	87635120	+	878.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER4B|LTR|ERVK	-63934.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	1.55321069070486	0.75668510578792	0.738513880396217	0.724093218960739	2.20206916842172	1.69198841591156	0.742570465187433	1.43859568833288	2.14327104352246	0.149069771499957	0.600718467909702
Merged-chr15-79893034-4	chr15	79892972	79893172	+	761.875	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_030675)	promoter-TSS (NR_030675)	66.0	NR_030675	109361.0	Mm.394656	NR_030675		D730005E14Rik	-	RIKEN cDNA D730005E14 gene	ncRNA	2.95559681384935	2.02435689579826	4.21270945578248	3.12142497800578	1.97810132862704	2.59585991105635	2.34648799534701	1.89575043097426	-1.97338231195455	0.0125729172502602	0.128007268028811
Merged-chr15-97373378-4	chr15	97373317	97373517	+	960.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172293, intron 4 of 5)	intron (NM_172293, intron 4 of 5)	-126130.0	NM_001164602	105827.0	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-9997824-1	chr1	9997724	9997924	+	580.0	f1_balb.idr	intron (NR_110971, intron 4 of 6)	intron (NR_110971, intron 4 of 6)	11312.0	NR_110971	69312.0	Mm.386795	NM_027033	ENSMUSG00000025916	Ppp1r42	1700011J18Rik|4930418G15Rik|Lrrc67|TLRR	protein phosphatase 1, regulatory subunit 42	protein-coding	-1.26550836321643	-1.23538490674683	-1.24673049817958	-1.25605010478787	-1.26497736998827	-0.580802564315158	-1.24416210496749	-1.25438189966081	2.74054745292391	0.426663645876262	1
Merged-chr13-56177665-2	chr13	56177566	56177766	+	990.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001168615, intron 1 of 2)	intron (NM_001168615, intron 1 of 2)	1219.0	NM_145976	212937.0	Mm.116697	NM_145976	ENSMUSG00000049625	Tifab	-	TRAF-interacting protein with forkhead-associated domain, family member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5407397-4	chr19	5407417	5407617	+	866.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027938, intron 1 of 3)	intron (NR_027938, intron 1 of 3)	702.0	NR_027938	74931.0	Mm.388511	NR_015545	ENSMUSG00000086938	4930481A15Rik	-	RIKEN cDNA 4930481A15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-54386145-3	chr14	54386047	54386247	+	872.477783	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011405, intron 4 of 11)	intron (NM_011405, intron 4 of 11)	23325.0	NM_001253680	20540.0	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	2.76963839030697	2.81156601074189	1.5291096875265	2.64191408786995	2.79226519496842	2.44306597132639	3.02147458670152	2.93071259189515	0.550261456145566	0.48148745061369	0.929401318280257
Merged-chr4-109271973-4	chr4	109271877	109272077	+	969.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8298.0	NM_007943	13858.0	Mm.318250	NM_007943	ENSMUSG00000028552	Eps15	2410112D09Rik	epidermal growth factor receptor pathway substrate 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-30771293-3	chr10	30771171	30771371	+	613.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358842, intron 2 of 14)	intron (NM_001358842, intron 2 of 14)	32055.0	NM_001358841	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-83172303-4	chr15	83172208	83172408	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029787)	promoter-TSS (NM_029787)	-100.0	NM_029787	109754.0	Mm.22560	NM_029787	ENSMUSG00000018042	Cyb5r3	0610016L08Rik|2500002N19Rik|C85115|Dia-1|Dia1|WU:AL591952.1-001|WU:AL591952.1-002|WU:AL591952.1-003|WU:Cyb5r3	cytochrome b5 reductase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-16345144-2	chr19	16345044	16345244	+	814.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008139, intron 5 of 6)	Lx2B2|LINE|L1	-30140.0	NR_105832	102465218.0		NR_105832	ENSMUSG00000098718	Mir496b	Gm28028|mmu-mir-496b	microRNA 496b	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-62848254-2	chr4	62848154	62848354	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-117320.0	NM_028326	72701.0	Mm.26479	NM_028326	ENSMUSG00000028358	Zfp618	2810031P15Rik|2810040O04Rik|AI415580|AI505139|D430033D05Rik|Nedd10|Znf618|bM257P7.1	zinc finger protein 618	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-32165993-2	chr18	32165893	32166093	+	895.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011946, intron 1 of 16)	intron (NM_011946, intron 1 of 16)	2904.0	NM_011946	26405.0	Mm.211762	NM_011946	ENSMUSG00000024383	Map3k2	9630061B06Rik|AI585793|Mekk2|Mekk2b	mitogen-activated protein kinase kinase kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133513168-4	chr4	133513068	133513268	+	771.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5795.0	NM_001083916	69073.0	Mm.299081	NM_133707	ENSMUSG00000037600	Kdf1	1810019J16Rik	keratinocyte differentiation factor 1	protein-coding	3.08400937842053	2.84919661743725	2.95123427778857	2.30649102517044	2.90529267527061	3.24873517353373	1.82301653752282	2.31845666738882	-0.266066484860115	0.726955770953661	0.998431161219273
Merged-chr8-70631612-4	chr8	70631521	70631721	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001330687, exon 2 of 3)	5' UTR (NM_001330687, exon 2 of 3)	474.0	NM_011819	23886.0	Mm.31325	NM_011819	ENSMUSG00000038508	Gdf15	MIC-1|NAG-1|SBF	growth differentiation factor 15	protein-coding	0.496438636916523	0.105149115085325	1.09125487588727	0.0923409581701465	0.612362589805337	0.106766084772911	0.0995360931855425	0.0933219263425081	-1.6600661759658	0.433219298839951	1
Merged-chr17-36152724-2	chr17	36152624	36152824	+	572.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_033517, intron 1 of 3)	intron (NR_033517, intron 1 of 3)	7706.0	NR_033517	675325.0	Mm.75890	NR_033517	ENSMUSG00000038311	2410017I17Rik	-	RIKEN cDNA 2410017I17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-79842771-4	chr3	79842671	79842871	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027495)	promoter-TSS (NM_027495)	-109.0	NM_027495	70652.0	Mm.46635	NM_027495	ENSMUSG00000027956	Tmem144	1110057I03Rik|5730537D05Rik	transmembrane protein 144	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-33003806-2	chr19	33003706	33003906	+	627.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-153306.0	NR_039552	100628575.0		NR_039552	ENSMUSG00000106278	Mir3970	mmu-mir-3970|mu-mir-3970	microRNA 3970	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-51835247-3	chr12	51835166	51835366	+	638.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5730.0	NM_144788	207304.0	Mm.249391	NM_144788	ENSMUSG00000035247	Hectd1	A630086P08Rik|AI844876|b2b327Clo|opm	HECT domain E3 ubiquitin protein ligase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-21333325-4	chr16	21333234	21333434	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_131983)	promoter-TSS (NR_131983)	22.0	NR_131983	76222.0	Mm.86031	NR_131983		Magef1	6430590I03Rik	melanoma antigen family F, 1	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-122064658-4	chr14	122064401	122064601	+	838.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER5|LTR|ERV1	29827.0	NM_001037744	223262.0	Mm.297637	NM_001037744	ENSMUSG00000071229	Timm8a2	-	translocase of inner mitochondrial membrane 8A2	protein-coding	0.841387002320687	0.930425232342079	0.901888351163159	1.29396787115656	0.99165424005069	1.73087418320556	0.702014709054737	1.30195118988007	1.02185850337661	0.457959767205633	0.919570891419578
Merged-chr2-43784012-4	chr2	43783947	43784147	+	774.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301831, intron 2 of 14)	intron (NM_001301831, intron 2 of 14)	35223.0	NM_001301831	76117.0	Mm.217350	NM_153820	ENSMUSG00000049744	Arhgap15	5830480G12Rik	Rho GTPase activating protein 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-3428990-3	chr11	3428888	3429088	+	793.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110959, intron 1 of 5)	intron (NR_110959, intron 1 of 5)	-19750.0	NM_010718	16886.0	Mm.124176	NM_010718	ENSMUSG00000020451	Limk2	Limk-2|whe	LIM motif-containing protein kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19692711-4	chr7	19692627	19692827	+	939.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007469)	promoter-TSS (NM_007469)	-68.0	NM_007469	11812.0	Mm.182440	NM_007469	ENSMUSG00000040564	Apoc1	Apo-CIB|ApoC-IB|apo-CI|apoC-I	apolipoprotein C-I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128738154-2	chr2	128738045	128738245	+	593.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 3 of 18)	intron (NM_008587, intron 3 of 18)	39230.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-181184480-1	chr2	181184380	181184580	+	549.0	f1_c57bl6.idr	Intergenic	Intergenic	-2342.0	NR_151465	66496.0	Mm.213943	NM_025598	ENSMUSG00000016344	Ppdpf	0610012G23Rik|2610317A05Rik|2700038C09Rik|3110053G12Rik	pancreatic progenitor cell differentiation and proliferation factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-72199005-4	chr5	72198916	72199116	+	670.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Rod|LINE|L1	-4313.0	NR_003966	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-67080392-3	chr11	67080297	67080497	+	760.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001099635, intron 3 of 40)	intron (NM_001099635, intron 3 of 40)	2097.0	NM_001099635	17883.0	Mm.340090	NM_001099635	ENSMUSG00000020908	Myh3	MyHC-emb|Myhs-e|Myhse	myosin, heavy polypeptide 3, skeletal muscle, embryonic	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-88540571-3	chr17	88540481	88540681	+	688.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028658, intron 1 of 21)	intron (NM_028658, intron 1 of 21)	10457.0	NM_028658	73825.0	Mm.271817	NM_028658	ENSMUSG00000034709	Ppp1r21	1110018J12Rik|AI426045|AW550781|Ccdc128|Klraq1	protein phosphatase 1, regulatory subunit 21	protein-coding	1.67364880372596	1.3493853570762	1.82446833136587	1.04404245078108	2.09374492118343	2.2731146325767	2.45440227229169	1.0475152399353	1.58151267694537	0.169363814175052	0.636334146911985
Merged-chr16-11069112-2	chr16	11069012	11069212	+	703.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009223, intron 1 of 1)	intron (NM_009223, intron 1 of 1)	2814.0	NM_009223	20621.0	Mm.325800	NM_009223	ENSMUSG00000037972	Snn	2810407J07Rik|AI848521|AW547286	stannin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-36766395-2	chr19	36766311	36766511	+	773.5	f0_c57.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-29807.0	NM_016854	53412.0	Mm.24724	NM_016854	ENSMUSG00000067279	Ppp1r3c	PTG|Ppp1r5	protein phosphatase 1, regulatory (inhibitor) subunit 3C	protein-coding	2.8054428526892	3.35457909020358	2.12985685470094	2.83582577790346	0.973308620651384	1.42559108199226	1.06634572093618	1.02968729845319	-5.37027897567715	1.96714503267016e-05	0.00079915822015722
Merged-chr8-79294965-4	chr8	79294842	79295042	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133823)	promoter-TSS (NM_133823)	14.0	NM_133823	109136.0	Mm.26510	NM_133823	ENSMUSG00000037022	Mmaa	2810018E08Rik|AI840684	methylmalonic aciduria (cobalamin deficiency) type A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-82987945-3	chr1	82987859	82988059	+	798.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50489.0	NM_030556	80721.0	Mm.261542	NM_030556	ENSMUSG00000038496	Slc19a3	A230084E24Rik|AI788884|ThTr2	solute carrier family 19, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-40058827-2	chr10	40058727	40058927	+	811.1999509999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 3 of 5)	intron (NM_001114332, intron 3 of 5)	-33559.0	NM_144821	215929.0	Mm.55513	NM_144821	ENSMUSG00000038522	Mfsd4b1	AI317395|AI482555|Naglt1a	major facilitator superfamily domain containing 4B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-26915576-2	chr2	26915476	26915676	+	767.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013678)	promoter-TSS (NM_013678)	-845.0	NM_013678	20931.0	Mm.389260	NM_013678	ENSMUSG00000014873	Surf2	Surf-2	surfeit gene 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45438111-2	chr7	45438011	45438211	+	660.166687	f1_balb.idr|f1_c57bl6.idr	exon (NM_030678, exon 3 of 16)	exon (NM_030678, exon 3 of 16)	3272.0	NM_030678	14936.0	Mm.275654	NM_030678	ENSMUSG00000003865	Gys1	Gys3|MGS	glycogen synthase 1, muscle	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-118700180-4	chr14	118700063	118700263	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163676, intron 1 of 29)	MTC|LTR|ERVL-MaLR	6056.0	NM_001163676	239273.0	Mm.40537	NM_001033336	ENSMUSG00000032849	Abcc4	ABCC4-N1|D630049P08Rik|MOATB|MRP4	ATP-binding cassette, sub-family C (CFTR/MRP), member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122830587-4	chr8	122830492	122830692	+	867.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17782.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-63363489-2	chr4	63363389	63363589	+	830.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011016, intron 3 of 5)	intron (NM_011016, intron 3 of 5)	1040.0	NM_011016	18406.0	Mm.14173	NM_011016	ENSMUSG00000061540	Orm2	Agp1|Orm-2	orosomucoid 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-34126047-4	chr7	34125935	34126135	+	967.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207212, intron 1 of 7)	ORR1E|LTR|ERVL-MaLR	7233.0	NM_207212	101543.0	Mm.422738	NM_207212	ENSMUSG00000036459	Wtip	-	WT1-interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-153894444-4	chr1	153894355	153894555	+	997.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	2809.0	NM_178244	240819.0	Mm.453236	NM_178244	ENSMUSG00000047053	Teddm1a	Epdd1|Teddm1|e9-1	transmembrane epididymal protein 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-46490029-2	chr4	46489929	46490129	+	697.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_053179, intron 1 of 5)	intron (NM_053179, intron 1 of 5)	700.0	NM_053179	94181.0	Mm.249349	NM_053179	ENSMUSG00000028334	Nans	4632418E04Rik|BB056474|Sas	N-acetylneuraminic acid synthase (sialic acid synthase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-77963480-4	chr9	77963370	77963570	+	675.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134255, intron 3 of 7)	intron (NM_134255, intron 3 of 7)	46105.0	NM_134255	68801.0	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	-1.14149542847138	-0.33100028091332	-1.12720875772362	-1.13728867753953	-1.14086750656251	-1.11193125150289	-1.12436624874263	-1.1356767669541	-2.98824766641611	0.369648585513947	1
Merged-chr3-138145019-5	chr3	138144734	138144934	+	974.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001348197, intron 1 of 8)	intron (NM_001348197, intron 1 of 8)	1035.0	NM_001348197	108943.0	Mm.471692	NM_175389	ENSMUSG00000004127	Trmt10a	3110023L08Rik|AA794508|Rg9mtd2|Rnmtd2	tRNA methyltransferase 10A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-41572175-4	chr13	41572084	41572284	+	893.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34032.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-80948933-2	chr8	80948846	80949046	+	1000.0	f0_c57.idr|f1_balb.idr	Intergenic	Intergenic	65960.0	NM_027554	74841.0	Mm.246018	NM_027554	ENSMUSG00000038250	Usp38	4631402N15Rik|4833420O05Rik|AA536967|AU044701|AW544820|mKIAA1891	ubiquitin specific peptidase 38	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-51789015-4	chr3	51788934	51789134	+	848.1845089999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 2 of 4)	intron (NM_001004176, intron 2 of 4)	127855.0	NM_001310482	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64229739-2	chr5	64229639	64229839	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289514)	promoter-TSS (NM_001289514)	-618.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-115248068-3	chr10	115248017	115248217	+	834.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025706, intron 1 of 16)	MTD|LTR|ERVL-MaLR	3376.0	NM_025706	66687.0	Mm.22252	NM_025706	ENSMUSG00000020130	Tbc1d15	4432405K22Rik|AU022358|AU023730|AW557774|Ly6dl|Rab7-GAP	TBC1 domain family, member 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-10489269-4	chr16	10489182	10489382	+	975.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001243761)	promoter-TSS (NM_001243761)	-499.0	NM_001243761	12265.0	Mm.249560	NM_007575	ENSMUSG00000022504	Ciita	C2ta|EG669998|Gm9475|Mhc2ta	class II transactivator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-41361235-4	chr4	41361131	41361331	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355508, intron 1 of 6)	intron (NM_001355508, intron 1 of 6)	9268.0	NM_001355508	67123.0	Mm.289795	NM_023305	ENSMUSG00000028437	Ubap1	2700092A01Rik|NAG20|UBAP-1|Ubap	ubiquitin-associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128551705-2	chr10	128551612	128551812	+	666.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2B1|LTR|ERVL	-2544.0	NM_018860	67945.0	Mm.290786	NM_018860	ENSMUSG00000093674	Rpl41	1810055P16Rik|2210411K19Rik	ribosomal protein L41	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80674849-5	chr10	80674777	80674977	+	926.957153	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021462, intron 2 of 13)	intron (NM_021462, intron 2 of 13)	1416.0	NM_021462	17347.0	Mm.42126	NM_021462	ENSMUSG00000020190	Mknk2	2010016G11Rik|Gprk7|Mnk2	MAP kinase-interacting serine/threonine kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-118344961-2	chr7	118344861	118345061	+	597.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19A|LTR|ERVK	98599.0	NM_001362180	110058.0	Mm.156558	NM_138649	ENSMUSG00000058420	Syt17	Bk|sytXVII	synaptotagmin XVII	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-108726287-4	chr9	108726172	108726372	+	851.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008924, intron 4 of 10)	L1MA5|LINE|L1	34129.0	NM_008924	19087.0	Mm.253102	NM_008924	ENSMUSG00000032601	Prkar2a	1110061A24Rik|AI317181|AI836829|RII(alpha)	protein kinase, cAMP dependent regulatory, type II alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-78236963-4	chr16	78236862	78237062	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18492.0	NR_045698	100503619.0	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-40415686-3	chr1	40415595	40415795	+	663.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13875.0	NM_001294171	17082.0	Mm.289824	NM_010743	ENSMUSG00000026069	Il1rl1	DER4|Fit-1|Ly84|ST2L|St2|St2-rs1|T1|T1/ST2	interleukin 1 receptor-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-51911708-4	chr11	51911625	51911825	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB8|LINE|L1	-54095.0	NM_001357588	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-43234601-6	chr5	43234551	43234751	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175937, exon 1 of 11)	exon (NM_175937, exon 1 of 11)	703.0	NR_028417	665934.0	Mm.381491	NR_028417	ENSMUSG00000085720	Gm7854	EG665934	predicted gene 7854	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-12961919-4	chr7	12961832	12962032	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	-3906.0	NM_001362140	243834.0	Mm.133086	NM_178732	ENSMUSG00000004500	Zfp324	A930002M05|D430030K24Rik|ZF5128	zinc finger protein 324	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-14120969-4	chr14	14120886	14121086	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025550)	promoter-TSS (NM_025550)	-82.0	NM_025550	66413.0	Mm.27591	NM_025550	ENSMUSG00000021737	Psmd6	2400006A19Rik	proteasome (prosome, macropain) 26S subunit, non-ATPase, 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-113777969-3	chr11	113777868	113778068	+	771.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-26153.0	NM_001163346	56699.0	Mm.293378	NM_020006	ENSMUSG00000041598	Cdc42ep4	1500041M20Rik|Borg4|CEP4	CDC42 effector protein (Rho GTPase binding) 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-102032942-4	chr5	102032844	102033044	+	900.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 2 of 66)	intron (NM_172882, intron 2 of 66)	36977.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-64155372-2	chr13	64155243	64155443	+	726.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2144.0	NM_175494	238673.0	Mm.300065	NM_175494	ENSMUSG00000044934	Zfp367	8030486J21Rik|ZFF29a|ZFF29b|Znf367	zinc finger protein 367	protein-coding	-0.20124959841748	-0.136711774436779	-0.337423760959253	-0.173948995049112	-0.345662735174707	-0.332002972675627	0.444745780477654	-0.340241065675509	1.14131541116064	0.623910229851846	1
Merged-chr11-17166834-4	chr11	17166734	17166934	+	827.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024459, intron 1 of 5)	intron (NM_024459, intron 1 of 5)	7536.0	NM_024459	19058.0	Mm.41840	NM_024459	ENSMUSG00000033953	Ppp3r1	CaNB1|Cnb1|MCIP1	protein phosphatase 3, regulatory subunit B, alpha isoform (calcineurin B, type I)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-34520548-2	chr5	34520448	34520648	+	841.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5236.0	NM_011893	24055.0	Mm.5012	NM_011893	ENSMUSG00000054520	Sh3bp2	3BP2	SH3-domain binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4_JH584295_random-595-1	chr4_JH584295_random	495	695	+	954.0	f0_c57.idr		Intergenic											0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-47245019-2	chr13	47244919	47245119	+	910.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001170643, exon 8 of 8)	3' UTR (NM_001170643, exon 8 of 8)	51016.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132783605-3	chr4	132783505	132783705	+	874.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033308, intron 4 of 5)	intron (NM_001033308, intron 4 of 5)	12759.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128428714-4	chr2	128428607	128428807	+	896.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028591, intron 1 of 1)	intron (NR_028591, intron 1 of 1)	644.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	0.269736538004619	0.150452791649279	0.145057166063229	0.546378200117238	0.499457153239099	0.15167096657382	0.317975530305104	0.750056865511147	1.186143912432	0.537033677957329	1
Merged-chr14-70153641-6	chr14	70153525	70153725	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001004155)	TTS (NM_001004155)	166.0	NM_146055	219158.0	Mm.218284	NM_146055	ENSMUSG00000033712	Ccar2	2610301G19Rik|Dbc1|mKIAA1967	cell cycle activator and apoptosis regulator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-105629716-1	chr7	105629616	105629816	+	1000.0	f1_c57bl6.idr	intron (NM_018880, intron 1 of 11)	intron (NM_018880, intron 1 of 11)	3855.0	NM_018880	55992.0	Mm.29290	NM_018880	ENSMUSG00000036989	Trim3	BERP1|HAC1|Rnf22	tripartite motif-containing 3	protein-coding	2.83710690981748	2.62029031666829	2.83296069778476	2.91381923128445	2.11995917472761	2.63944379530206	1.95891318584303	1.90270717285044	-1.34913266289787	0.082697200820779	0.440065500642093
Merged-chr6-87042753-4	chr6	87042662	87042862	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013528)	promoter-TSS (NM_013528)	-84.0	NM_013528	14583.0	Mm.19893	NM_013528	ENSMUSG00000029992	Gfpt1	2810423A18Rik|AI324119|AI449986|GFA|GFAT|GFAT1|GFAT1m|Gfpt	glutamine fructose-6-phosphate transaminase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165287006-3	chr2	165286921	165287121	+	786.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252575, intron 1 of 9)	intron (NM_001252575, intron 1 of 9)	766.0	NM_001252574	228875.0	Mm.21184	NM_144893	ENSMUSG00000017664	Slc35c2	C85957|CGI-15|D2Wsu58e|Ovcov1	solute carrier family 35, member C2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-120766478-3	chr9	120766384	120766584	+	633.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	148766.0	NR_040742	76402.0	Mm.436588	NR_040742	ENSMUSG00000100146	1700020M21Rik	-	RIKEN cDNA 1700020M21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128124681-4	chr2	128124547	128124747	+	916.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_028765)	TTS (NM_028765)	-1391.0	NM_207681	12125.0	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-35889982-2	chr12	35889887	35890087	+	626.75	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-35634.0	NM_207531	403205.0	Mm.190508	NM_207531	ENSMUSG00000036231	Agr3	BCMP11|E030025L21Rik|Gm888	anterior gradient 3	protein-coding	-1.84303373260285	-1.81303463126392	-1.82210660711932	-1.82955859819738	-1.84092785115721	-1.81106869625141	-1.8200529106377	-1.54273750312762	1.50114612804783	0.670102668014672	1
Merged-chr16-32674492-2	chr16	32674392	32674592	+	581.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289443, intron 1 of 5)	intron (NM_001289443, intron 1 of 5)	1338.0	NM_001289443	51789.0	Mm.251115	NM_016788	ENSMUSG00000022791	Tnk2	Ack|Ack-1|Ack1|Cdgip|Pyk1	tyrosine kinase, non-receptor, 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-73239521-2	chr14	73239421	73239621	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_175116, exon 1 of 1)	exon (NM_175116, exon 1 of 1)	1630.0	NM_175116	67168.0	Mm.390681	NM_175116	ENSMUSG00000033446	Lpar6	2610302I02Rik|P2ry5|P2y5	lysophosphatidic acid receptor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-9964712-2	chr19	9964612	9964812	+	763.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15888.0	NR_073181	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-50251559-4	chr16	50251464	50251664	+	942.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027444, intron 7 of 16)	ORR1E|LTR|ERVL-MaLR	-178712.0	NR_045935	224180.0	Mm.146439	NM_175010		Gm4827	B130050K08|EG224180	predicted gene 4827	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-17839660-2	chr17	17839550	17839750	+	584.0	f0_balb.idr|f1_c57bl6.idr	TTS (NM_001162909)	TTS (NM_001162909)	8675.0	NM_001162909	75202.0	Mm.227456	NM_029205	ENSMUSG00000080316	Spaca6	4930546H06Rik|9530079D04Rik|B230206P06Rik|Ncrna00085|SPACA6A|let-7e|mir-125a|mir-99b	sperm acrosome associated 6	protein-coding	-0.183026505476872	-0.168088786763047	-0.172981046367034	-0.011032197030268	0.547816784499976	-0.166986157310741	-0.171901914454004	0.365806962284227	3.016176531492	0.200244621383488	1
Merged-chr2-32777012-2	chr2	32776912	32777112	+	761.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028273)	promoter-TSS (NR_028273)	-976.0	NR_028273	100302592.0		NR_028273	ENSMUSG00000064741	Snord14a	Rnu14|U14	small nucleolar RNA, C/D box 14A	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-95837041-2	chr16	95836941	95837141	+	554.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_040485, intron 3 of 3)	ID_B1|SINE|B4	61672.0	NR_040485	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-51879362-3	chr7	51879249	51879449	+	957.1904910000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_008087, exon 1 of 8)	5' UTR (NM_008087, exon 1 of 8)	382.0	NM_001330607	14453.0	Mm.207360	NM_008087	ENSMUSG00000030498	Gas2	Gas-2	growth arrest specific 2	protein-coding	1.945779053576	2.40075556421915	1.13279798557649	1.82434482585293	1.8590259633127	1.16287699293703	2.42079673386794	1.69477851754475	-0.0968290037173547	0.930785334814065	0.998431161219273
Merged-chr8-121580201-4	chr8	121580102	121580302	+	867.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-1396.0	NM_133765	76454.0	Mm.24829	NM_133765	ENSMUSG00000052934	Fbxo31	1110003O08Rik|2310046N15Rik|Fbx14|Fbxo14	F-box protein 31	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-31804107-4	chr18	31804025	31804225	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001170966)	promoter-TSS (NM_001170966)	68.0	NM_001170966	74320.0	Mm.277705	NM_028866	ENSMUSG00000024400	Wdr33	1110001N06Rik|2310011G05Rik|2810021O11Rik|8430413N20Rik|WDC146	WD repeat domain 33	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-73098365-2	chr14	73098265	73098465	+	548.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44145.0	NM_001170694	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69100638-2	chr11	69100538	69100738	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_011065, exon 2 of 23)	5' UTR (NM_011065, exon 2 of 23)	486.0	NM_001159367	18626.0	Mm.7373	NM_011065	ENSMUSG00000020893	Per1	Hftm|Per|m-rigui|mPer1	period circadian clock 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-16977737-3	chr11	16977635	16977835	+	831.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019549, intron 9 of 9)	ORR1G|LTR|ERVL-MaLR	26325.0	NM_176982	319701.0	Mm.120672	NM_176982	ENSMUSG00000044966	Fbxo48	A630050E13Rik	F-box protein 48	protein-coding	0.350291387762177	0.217058030856066	0.20958212497742	0.2037781999113	1.1781297659174	0.753204026107461	0.406334460891286	0.385426577573952	3.54546188491047	0.0569514940017094	1
Merged-chr16-57231583-4	chr16	57231475	57231675	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358433)	promoter-TSS (NM_001358433)	-109.0	NM_001358433	67581.0	Mm.257819	NM_026254	ENSMUSG00000022749	Tbc1d23	4930451A13Rik|AU015720|AU043671|AU043778|D030022P07Rik|W51689	TBC1 domain family, member 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-130812589-4	chr7	130812522	130812722	+	920.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081038, intron 10 of 15)	intron (NM_001081038, intron 10 of 15)	38553.0	NM_001081038	330660.0	Mm.271550	NM_001081038	ENSMUSG00000040298	Btbd16	E330040A16Rik	BTB (POZ) domain containing 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-83983301-2	chr18	83983201	83983401	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	103261.0	NM_001081300	110796.0	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-26491291-4	chr14	26491132	26491332	+	858.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310445, intron 1 of 22)	intron (NM_001310445, intron 1 of 22)	43392.0	NM_032008	83997.0	Mm.36769	NM_032008	ENSMUSG00000021870	Slmap	D330001L02Rik|Miranda|Slap|mKIAA1601	sarcolemma associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124746306-2	chr6	124746206	124746406	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_007881, exon 5 of 10)	exon (NM_007881, exon 5 of 10)	-5227.0	NM_013535	14790.0	Mm.439877	NM_013535	ENSMUSG00000072772	Grcc10	2310033H05Rik|C10	gene rich cluster, C10 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-147178323-3	chr2	147178274	147178474	+	683.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077632, intron 2 of 2)	intron (NM_001077632, intron 2 of 2)	-5709.0	NR_030769	100313531.0	Mm.405189	NR_030769	ENSMUSG00000086509	Nkx2-2os	Gm14112|Nkx2-2as|Nkx2.2AS	NK2 homeobox 2, opposite strand	ncRNA	3.19266833570338	3.8314064882514	2.25865326200166	3.43049781534543	1.41550749220668	2.70157579064707	3.48707955169986	2.65141140719409	-0.898995208589926	0.251803983280097	0.749698831323701
Merged-chr11-90558832-3	chr11	90558712	90558912	+	830.1777950000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011505, intron 12 of 17)	intron (NM_011505, intron 12 of 17)	79296.0	NM_011505	20913.0	Mm.207203	NM_011505	ENSMUSG00000020546	Stxbp4	6030470M02Rik|Synip	syntaxin binding protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24903251-1	chr17	24903151	24903351	+	806.0	f1_c57bl6.idr	intron (NM_013931, intron 18 of 31)	intron (NM_013931, intron 18 of 31)	6751.0	NM_019730	79059.0	Mm.430765	NM_019730	ENSMUSG00000073435	Nme3	1810009F08Rik|AI413736|DR-nm23|Ndk3|Nm23-DR|Nm23-M3	NME/NM23 nucleoside diphosphate kinase 3	protein-coding	-1.0433167833895	-1.02384614025209	-1.0354241979555	-1.03992149915231	-0.471480376444205	-1.02133712684873	-0.855046535079835	-1.03956363812707	2.84354138876931	0.366125231135294	1
Merged-chr12-102367311-4	chr12	102367264	102367464	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177620, intron 5 of 9)	intron (NM_177620, intron 5 of 9)	72449.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-25370417-4	chr15	25370314	25370514	+	990.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027395, intron 1 of 1)	intron (NM_027395, intron 1 of 1)	43350.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115329578-2	chr11	115329478	115329678	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_172801, exon 7 of 8)	exon (NM_172801, exon 7 of 8)	-5153.0	NM_001347647	69602.0	Mm.101844	NM_027132	ENSMUSG00000018862	Otop3	2310011E08Rik	otopetrin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-55731073-3	chr16	55730993	55731193	+	802.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	91045.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-23998550-4	chr17	23998444	23998644	+	996.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133731)	promoter-TSS (NM_133731)	-444.0	NM_133731	70835.0	Mm.157351	NM_133731	ENSMUSG00000045027	Prss22	4733401N09Rik|BSSP-4|SP001LA	protease, serine 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125351083-2	chr6	125350986	125351186	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011609, intron 1 of 9)	intron (NM_011609, intron 1 of 9)	1363.0	NM_011609	21937.0	Mm.1258	NM_011609	ENSMUSG00000030341	Tnfrsf1a	CD120a|FPF|TNF-R|TNF-R-I|TNF-R1|TNF-R55|TNF-alphaR1|TNFAR|TNFR60|TNFRI|TNFRp55|TNFalpha-R1|Tnfr-2|Tnfr1|p55|p55-R	tumor necrosis factor receptor superfamily, member 1a	protein-coding	1.72277423540923	1.93869923526067	1.8708523937535	1.43357582594504	1.51407093566896	1.52623794062611	1.99226010344927	1.06543811788829	-0.588085927584757	0.598009494670503	0.972211099872181
Merged-chr10-21990698-2	chr10	21990598	21990798	+	749.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161848, intron 1 of 11)	intron (NM_001161848, intron 1 of 11)	-1525.0	NM_001161849	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	-1.06997269762433	-1.30473905204845	-1.3145270772132	-1.32256725251374	-1.06385251204029	-1.30261794616352	-1.3123112828633	-1.32112806497905	0.0394047164033882	0.991001358494878	1
Merged-chr19-10665614-2	chr19	10665514	10665714	+	779.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_153778, exon 20 of 20)	non-coding (NR_153778, exon 20 of 20)	12457.0	NM_021453	58803.0	Mm.34037	NM_021453	ENSMUSG00000024738	Pga5	1110035E17Rik|Pepf	pepsinogen 5, group I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-4704632-3	chr11	4704535	4704735	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356391)	promoter-TSS (NM_001356391)	-21.0	NM_001356391	67178.0	Mm.271056	NM_026015	ENSMUSG00000009076	Zmat5	2610510L01Rik|D11Bwg0572e|D11Bwg1548e	zinc finger, matrin type 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-98145132-2	chr15	98145032	98145232	+	698.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001170711, intron 1 of 3)	intron (NM_001170711, intron 1 of 3)	570.0	NM_030121	78541.0	Mm.200766	NM_030121	ENSMUSG00000048175	Asb8	4930539L19Rik|AI788835|C430011H06Rik	ankyrin repeat and SOCS box-containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-62736219-2	chr4	62736119	62736319	+	763.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	62245.0	NM_001310706	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-8867558-4	chr13	8867464	8867664	+	776.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039388, intron 1 of 13)	URR1B|DNA|hAT-Charlie	3480.0	NM_001039389	207615.0	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-24046666-5	chr5	24046478	24046678	+	854.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15888.0	NM_053090	84652.0	Mm.304976	NM_053090	ENSMUSG00000028995	Fam126a	AB030242|Drctnnb1a	family with sequence similarity 126, member A	protein-coding	0.484825746462068	0.527730480759026	0.928130423349688	1.29009804152333	0.84312622951683	1.90166447179175	0.748643330041136	0.505136570652422	1.10036217937005	0.484200896629066	0.931207887927275
Merged-chr14-75870834-2	chr14	75870734	75870934	+	740.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22911.0	NR_028481	100303751.0	Mm.484707	NR_028481	ENSMUSG00000065147	Snora31	MBI-161	small nucleolar RNA, H/ACA box 31	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-86224302-2	chr15	86224202	86224402	+	770.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145476, intron 1 of 12)	intron (NM_145476, intron 1 of 12)	9843.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-132171753-4	chr3	132171647	132171847	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020265, intron 1 of 3)	MER121|DNA|TcMar?	86455.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116099763-3	chr11	116099521	116099721	+	693.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10614.0	NM_001205081	217333.0	Mm.347770	NM_172570	ENSMUSG00000020773	Trim47	2210023F24Rik	tripartite motif-containing 47	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102365270-4	chr12	102365167	102365367	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177620, intron 5 of 9)	intron (NM_177620, intron 5 of 9)	74546.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59481919-3	chr15	59481817	59482017	+	965.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026746, intron 4 of 6)	intron (NM_026746, intron 4 of 6)	107719.0	NM_001164604	68501.0	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	1.18590876633131	0.772544995309925	0.522311742112631	0.512254682882705	1.53600992704995	1.62066249481047	0.525156130771835	0.514023917177827	1.58717324674383	0.344790991490302	0.845794803766071
Merged-chr13-113352755-3	chr13	113352655	113352855	+	829.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	143096.0	NM_023612	71690.0	Mm.38929	NM_023612	ENSMUSG00000042379	Esm1	0610042H23Rik|AV004503|ESM-1	endothelial cell-specific molecule 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-69295252-2	chr12	69295152	69295352	+	647.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6A|LTR|ERVK	-1429.0	NM_027117	69554.0	Mm.234368	NM_027117	ENSMUSG00000020978	Klhdc2	2310022K15Rik|D12Ertd522e|HCLP-1|LCP	kelch domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-87119195-2	chr3	87119095	87119295	+	658.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001170985, intron 2 of 15)	(CAT)n|Simple_repeat|Simple_repeat	55552.0	NM_001170985	170643.0	Mm.89552	NM_130867	ENSMUSG00000041734	Kirrel	6720469N11Rik|Kirrel1|Neph1	kirre like nephrin family adhesion molecule 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-72420977-4	chr8	72420872	72421072	+	939.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122832, intron 1 of 15)	CpG	502.0	NM_001122832	13859.0	Mm.288894	NM_007944	ENSMUSG00000006276	Eps15l1	9830147J04Rik|AI593686|Eps15-rs|Eps15R	epidermal growth factor receptor pathway substrate 15-like 1	protein-coding	2.27141481236514	2.40318073043994	2.58259019786829	2.71588872011364	2.29002974317233	3.32361063098922	2.71360963580238	2.27093858550044	0.450262160859449	0.554164459330522	0.959914380895535
Merged-chr12-55569906-4	chr12	55569809	55570009	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4704.0	NM_001277340	79459.0	Mm.392781	NM_001277340	ENSMUSG00000063129	Aldoart2	4933425L11Rik|Aldo1-ps1|Aldoa-ps1	aldolase 1 A, retrogene 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-26991223-4	chr3	26991114	26991314	+	967.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	162640.0	NM_007900	13605.0	Mm.261453	NM_007900	ENSMUSG00000027699	Ect2	AI528536	ect2 oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96601530-3	chr3	96601436	96601636	+	858.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163170, intron 1 of 5)	intron (NM_001163170, intron 1 of 5)	403.0	NM_001163170	280411.0	Mm.482147	NM_001163170	ENSMUSG00000049288	Lix1l	D130027M04Rik	Lix1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-66830581-5	chr4	66830374	66830574	+	832.34668	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021297, intron 1 of 2)	Lx2|LINE|L1	2923.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	-0.0337510261540077	-0.143574445202343	0.244841509233073	0.11111991617701	-0.153231245655622	0.289299650187841	-0.146237868058245	-0.14913858157356	-0.732192522682672	0.745696645834567	1
Merged-chr10-13443808-3	chr10	13443743	13443943	+	884.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195065, intron 1 of 12)	intron (NM_001195065, intron 1 of 12)	30553.0	NM_001195065	215789.0	Mm.283359	NM_001033257	ENSMUSG00000062866	Phactr2	AV158170|BC012871	phosphatase and actin regulator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-32133184-4	chr5	32133094	32133294	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-3278.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-36716105-8	chr15	36716008	36716208	+	989.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	74824.0	NM_001253807	22631.0	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46505466-8	chr19	46505350	46505550	+	923.6875	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053100, intron 1 of 5)	intron (NM_053100, intron 1 of 5)	3802.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133182860-3	chr4	133182756	133182956	+	985.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153423, intron 2 of 8)	B1F2|SINE|Alu	-12799.0	NR_105984	102466215.0		NR_105984	ENSMUSG00000099202	Mir7017	Gm27945|mmu-mir-7017	microRNA 7017	ncRNA	3.19963627958035	2.39948243629925	2.9085474107206	1.5094634528709	3.15199967092855	3.54281347389511	4.4882025209803	3.14630870722465	1.69155615738917	0.0179535247568176	0.16603781348841
Merged-chr1-191279551-2	chr1	191279453	191279653	+	798.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38565.0	NM_025424	66208.0	Mm.46444	NM_025424	ENSMUSG00000037499	Nenf	1110060M21Rik|SCIRP10|Spuf	neuron derived neurotrophic factor	protein-coding	1.4259748580777	1.51065824644127	0.80168882383452	0.791065664220491	1.43943748220491	0.818274657443746	1.33631807743406	1.71121718699696	0.710077433221511	0.619090544563217	0.978377997991791
Merged-chr3-137852593-1	chr3	137852493	137852693	+	1000.0	f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-11894.0	NM_001316995	51788.0	Mm.117541	NM_016750	ENSMUSG00000037894	H2afz	H2A.Z|H2a.z-1	H2A histone family, member Z	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-79668371-2	chr10	79668271	79668471	+	661.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_013591, exon 5 of 5)	3' UTR (NM_013591, exon 5 of 5)	-1039.0	NM_148934	110012.0	Mm.22623	NM_148934	ENSMUSG00000020308	Tpgs1	AV005629|Gm16517|Gtrgeo22|PGs1	tubulin polyglutamylase complex subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-68434716-4	chr2	68434613	68434813	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016866, intron 1 of 17)	intron (NM_016866, intron 1 of 17)	37268.0	NM_016866	53416.0	Mm.198414	NM_016866	ENSMUSG00000027030	Stk39	AW227544|AW556857|DCHT|RF005|Rnl5|SPAK	serine/threonine kinase 39	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-5841582-1	chr10	5841482	5841682	+	628.0	f0_balb.idr	intron (NM_001161822, intron 4 of 5)	intron (NM_001161822, intron 4 of 5)	-17639.0	NM_175374	108853.0	Mm.55082	NM_175374	ENSMUSG00000019774	Mtrf1l	9130004K12Rik	mitochondrial translational release factor 1-like	protein-coding	1.95248571853776	1.32028715498675	1.77960493394504	2.79759496808591	2.99201137745574	3.22727816486549	1.98469441474559	1.736532437141	1.14311714489909	0.228836220424223	0.722016539443097
Merged-chr15-9455394-4	chr15	9455304	9455504	+	824.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029341, intron 1 of 4)	intron (NM_029341, intron 1 of 4)	19376.0	NM_029341	75568.0	Mm.82143	NM_029341	ENSMUSG00000039676	Capsl	1700028N11Rik|AW125205	calcyphosine-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53030257-2	chr4	53030157	53030357	+	879.333374	f1_balb.idr|f1_c57bl6.idr	TTS (NM_013454)	TTS (NM_013454)	18377.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-108696055-4	chr6	108695959	108696159	+	958.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35125.0	NR_104577	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90442710-2	chr2	90442610	90442810	+	669.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 21 of 23)	intron (NM_008982, intron 21 of 23)	36464.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-19388905-4	chr2	19388805	19389005	+	920.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029619, intron 3 of 4)	intron (NM_029619, intron 3 of 4)	17269.0	NM_029619	76467.0	Mm.27166	NM_029619	ENSMUSG00000023094	Msrb2	2310050L06Rik|Mrsb|Msrb|Pilb	methionine sulfoxide reductase B2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70657000-2	chr11	70656900	70657100	+	828.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001276285)	promoter-TSS (NM_001276285)	-176.0	NM_001136062	13808.0	Mm.251322	NM_007933	ENSMUSG00000060600	Eno3	Eno-3|MSE	enolase 3, beta muscle	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-105914265-1	chr3	105914165	105914365	+	731.0	f0_balb.idr	exon (NM_027025, exon 2 of 7)	exon (NM_027025, exon 2 of 7)	9844.0	NM_009631	11542.0	Mm.235024	NM_009631	ENSMUSG00000000562	Adora3	A3AR|A3R|AA3R|ARA3|Gpcr2	adenosine A3 receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-98888608-2	chr10	98888508	98888708	+	574.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26034.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-75872415-4	chr16	75872312	75872512	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023380, intron 6 of 7)	intron (NM_023380, intron 6 of 7)	36854.0	NM_023380	67742.0	Mm.131406	NM_023380	ENSMUSG00000022876	Samsn1	4930571B16Rik|930571B16Rik|Hacs1|SLy2	SAM domain, SH3 domain and nuclear localization signals, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120903464-4	chr11	120903375	120903575	+	980.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027745, intron 5 of 18)	intron (NM_027745, intron 5 of 18)	29397.0	NM_027745	71276.0	Mm.275751	NM_027745	ENSMUSG00000048445	Ccdc57	4933434G05Rik	coiled-coil domain containing 57	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-6386857-1	chr4	6386757	6386957	+	609.0	f0_balb.idr	intron (NM_001098227, intron 6 of 8)	intron (NM_001098227, intron 6 of 8)	21177.0	NM_001098227	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-45302749-2	chr9	45302649	45302849	+	658.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16351.0	NM_001013373	214531.0	Mm.394987	NM_001013373	ENSMUSG00000037129	Tmprss13	BC010843|Tpmrss13	transmembrane protease, serine 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-75753671-3	chr7	75753541	75753741	+	647.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_029332, exon 37 of 37)	3' UTR (NM_029332, exon 37 of 37)	-94697.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-173274898-1	chr2	173274798	173274998	+	564.0	f0_balb.idr	intron (NM_022995, intron 1 of 3)	intron (NM_022995, intron 1 of 3)	1635.0	NM_022995	65112.0	Mm.73682	NM_022995	ENSMUSG00000038400	Pmepa1	2210418I02Rik|AW455466|Erg1.2|N4wbp4|Stag1|Tmepai	prostate transmembrane protein, androgen induced 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98786684-4	chr11	98786584	98786784	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8832.0	NM_001361931	74026.0	Mm.258352	NM_028722	ENSMUSG00000052915	Msl1	2810017F12Rik|4121402D02Rik|4930463F05Rik|AA682082|Msl-1	male specific lethal 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-82629808-4	chr10	82629722	82629922	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011561)	promoter-TSS (NM_011561)	-16.0	NM_001358517	21665.0	Mm.284252	NM_011561	ENSMUSG00000034674	Tdg	E130317C12Rik|JZA-3|Jza1	thymine DNA glycosylase	protein-coding	5.78847363089576	5.08985440193046	6.27344586368231	5.17634315625116	6.05387486704557	5.07982865758742	6.69610731078052	5.57508368712823	0.347716994087291	0.323593487594107	0.826332612263711
Merged-chr19-17124432-5	chr19	17124330	17124530	+	768.56665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_181348, exon 8 of 20)	exon (NM_181348, exon 8 of 20)	168312.0	NM_181348	353211.0	Mm.257354	NM_181348	ENSMUSG00000039126	Prune2	6330414G02Rik|A230083H22Rik|A330102H22Rik|Bmcc1|mKIAA0367	prune homolog 2	protein-coding	1.44623052950476	1.62307387364126	1.41192667263205	0.992330928041331	1.32056482478627	1.90570674483069	2.2151468911065	1.53081794089769	1.34562656734697	0.240415859015196	0.736569477638593
Merged-chr2-63511095-4	chr2	63510978	63511178	+	925.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	64210.0	NR_152174	667257.0	Mm.417007	NR_152174		Gm8541	EG667257	predicted gene 8541	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-93521550-1	chr10	93521450	93521650	+	769.0	f0_balb.idr	Intergenic	(CAAA)n|Simple_repeat|Simple_repeat	18483.0	NM_027908	71761.0	Mm.244518	NM_027908	ENSMUSG00000015890	Amdhd1	1300019J08Rik	amidohydrolase domain containing 1	protein-coding	1.15927595993935	1.4861212043228	1.00486159471739	2.01641329385672	1.33788346652839	1.95554256801623	1.44735544601133	2.41668444270124	1.12929514190564	0.329675548994295	0.831942889324137
Merged-chr1-156752449-1	chr1	156752349	156752549	+	883.5	f1_balb.idr	Intergenic	Intergenic	-33539.0	NM_145413	215015.0	Mm.229107	NM_145413	ENSMUSG00000033557	Fam20b	C530043G21Rik|mKIAA0475	family with sequence similarity 20, member B	protein-coding	1.91922793587131	1.6880769704903	1.16860201369701	2.02910590812482	2.31857705367944	2.31086625653939	2.82561841647355	1.14917198076075	1.34951326282472	0.206367316090942	0.694292103481728
Merged-chr9-44228347-4	chr9	44228262	44228462	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007619, intron 1 of 15)	intron (NM_007619, intron 1 of 15)	5684.0	NM_007619	12402.0	Mm.266871	NM_007619	ENSMUSG00000034342	Cbl	4732447J05Rik|Cbl-2|c-Cbl|cbl	Casitas B-lineage lymphoma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-158138859-2	chr2	158138759	158138959	+	921.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_009373, exon 3 of 13)	exon (NM_009373, exon 3 of 13)	7533.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134092194-3	chr6	134092060	134092260	+	788.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 2 of 8)	intron (NM_001303102, intron 2 of 8)	56460.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	1.93701451261913	1.30344713269012	1.383376958253	0.894869665020427	1.37106045786058	0.719066487534833	0.704837051162467	0.692451666846874	-2.12691544489832	0.152046429441814	0.605697220203301
Merged-chr8-123342483-3	chr8	123342387	123342587	+	796.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172287, intron 1 of 14)	intron (NM_172287, intron 1 of 14)	9774.0	NM_172287	234857.0	Mm.150200	NM_172287	ENSMUSG00000010154	Spire2	BC026502|Spir-2|Spir2	spire type actin nucleation factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-38846630-3	chr19	38846532	38846732	+	808.200012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145952, intron 1 of 12)	intron (NM_145952, intron 1 of 12)	10053.0	NM_001362424	209478.0	Mm.391153	NM_145952	ENSMUSG00000048720	Tbc1d12	BC033574	TBC1D12: TBC1 domain family, member 12	protein-coding	3.51746684757113	3.79027040774902	3.04378684119926	2.8355038076537	3.81523150302774	2.91163932238213	3.06841357652059	4.08705974922838	0.347638887828556	0.55853090485646	0.960321604678676
Merged-chr13-45031469-4	chr13	45031379	45031579	+	775.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29383.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-151433033-2	chr1	151432933	151433133	+	590.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026876, intron 1 of 14)	intron (NM_026876, intron 1 of 14)	4491.0	NM_001357570	98685.0	Mm.289373	NM_026876	ENSMUSG00000053286	Trmt1l	1190005F20Rik|AW226554|C1orf25|Trm1-like|Trm1l	tRNA methyltransferase 1 like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-59771510-4	chr13	59771415	59771615	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_153538)	TTS (NM_153538)	1549.0	NR_015349	13996.0	Mm.490435	NR_015349		Etohd2	AW491659	ethanol decreased 2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47255276-2	chr17	47255181	47255381	+	768.0	f0_balb.idr|f1_balb.idr	intron (NM_001097623, intron 4 of 19)	intron (NM_001097623, intron 4 of 19)	25051.0	NM_172622	224829.0	Mm.260989	NM_172622		Trerf1	9430096I18Rik|AI429294|B830015H24|RAPA|Trep-132|Trep132	transcriptional regulating factor 1	protein-coding	1.05210320967968	0.905885893698339	1.83313722375794	0.859188149190639	1.89172864466733	0.911569258923842	2.76162052208293	1.90023987678221	2.26770476835558	0.0765704582127111	0.420133700138464
Merged-chr5-3342411-4	chr5	3342308	3342508	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1485.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-156300112-2	chr2	156300025	156300225	+	620.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172674, intron 15 of 17)	L1MB2|LINE|L1	-12348.0	NM_027585	70873.0	Mm.475234	NM_027585	ENSMUSG00000038085	Cnbd2	4921517L17Rik|5430421B09Rik|Cris	cyclic nucleotide binding domain containing 2	protein-coding	2.07635661826372	1.57765928279549	2.50060782158934	2.1061949313235	1.42647335447995	1.58889060944617	1.53815058612045	1.08176172913833	-2.14197240978408	0.0480018846224129	0.318074343722226
Merged-chr3-121579545-2	chr3	121579445	121579645	+	568.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47201.0	NM_145394	213603.0	Mm.33062	NM_145394	ENSMUSG00000039865	Slc44a3	BC010552	solute carrier family 44, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-118094959-2	chr4	118094859	118095059	+	607.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285520, intron 2 of 11)	L1M5|LINE|L1	39987.0	NM_001285520	20441.0	Mm.251002	NM_009176	ENSMUSG00000028538	St3gal3	ST3GalIII|ST3N|Siat3|Siat6	ST3 beta-galactoside alpha-2,3-sialyltransferase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-87711355-2	chr1	87711255	87711455	+	648.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110192, intron 22 of 26)	intron (NM_001110192, intron 22 of 26)	-44656.0	NM_029846	77040.0	Mm.272972	NM_029846	ENSMUSG00000026289	Atg16l1	1500009K01Rik|Apg16l|Atg16l|WDR30	autophagy related 16-like 1 (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-173738414-2	chr1	173738314	173738514	+	826.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001204910, intron 1 of 7)	Lx8|LINE|L1	3395.0	NM_001204910	226691.0	Mm.440876	NM_001204910	ENSMUSG00000073490	Ifi207	AI607873|Pyhin-A|pyhinA	interferon activated gene 207	protein-coding	1.8932385512656	1.79277452234269	2.17008155880717	1.69661155919473	2.65127936250473	1.8045616772029	2.18676776124939	2.32893879847363	1.01039075115079	0.267108140580622	0.769922980421045
Merged-chr13-101692177-2	chr13	101692077	101692277	+	551.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077495, intron 7 of 15)	intron (NM_001077495, intron 7 of 15)	453.0	NM_001024955	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-83768010-2	chr7	83767910	83768110	+	567.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	26829.0	NM_029335	75556.0	Mm.17649	NM_029335	ENSMUSG00000011154	Cfap161	1700026D08Rik|AW047638|AW551802	cilia and flagella associated protein 161	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127508447-3	chr10	127508345	127508545	+	797.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177707, exon 12 of 12)	exon (NM_177707, exon 12 of 12)	-6494.0	NM_001098789	407790.0	Mm.336856	NM_001098789	ENSMUSG00000040280	Ndufa4l2	BC064011	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-39269574-3	chr3	39269460	39269660	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6C|LTR|ERVK	382620.0	NM_183221	329628.0	Mm.316210	NM_183221	ENSMUSG00000046743	Fat4	6030410K14Rik|9430004M15	FAT atypical cadherin 4	protein-coding	3.43444890875129	3.68712282813033	4.11568047527461	2.28453930429465	1.08836891013155	1.27865565049434	1.22177093111589	2.13742553879849	-4.22022732003515	2.32035351228605e-05	0.000914639127820102
Merged-chr2-158181599-2	chr2	158181499	158181699	+	636.666626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001131021)	TTS (NM_001131021)	-10409.0	NR_036606	73399.0	Mm.416861	NR_036606	ENSMUSG00000078957	1700060C20Rik	-	RIKEN cDNA 1700060C20 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-86668039-3	chr17	86667956	86668156	+	686.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-85808.0	NM_010137	13819.0	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-111725036-3	chr10	111724888	111725088	+	646.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-130715.0	NR_045344	71321.0	Mm.410785	NR_045344	ENSMUSG00000097082	4933440J02Rik	-	RIKEN cDNA 4933440J02 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-83435462-3	chr15	83435368	83435568	+	886.43335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358643, intron 1 of 9)	intron (NM_001358643, intron 1 of 9)	-2618.0	NM_001159510	23970.0	Mm.23978	NM_011862	ENSMUSG00000016664	Pacsin2	AI197433	protein kinase C and casein kinase substrate in neurons 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-40745515-2	chr19	40745415	40745615	+	594.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	85745.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-15730408-3	chr6	15730327	15730527	+	694.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175088, intron 2 of 4)	intron (NM_175088, intron 2 of 4)	9766.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-91428794-4	chr1	91428702	91428902	+	891.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011066, intron 17 of 22)	intron (NM_011066, intron 17 of 22)	-14764.0	NM_001360900	55927.0	Mm.280029	NM_019479	ENSMUSG00000067071	Hes6	AI326893|bHLHb41	hairy and enhancer of split 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28351967-4	chr7	28351910	28352110	+	817.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_028129)	TTS (NR_028129)	470.0	NR_028129	100302567.0		NR_028129		AF357399	MBI-142	snoRNA AF357399	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-35711782-6	chr12	35711651	35711851	+	988.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16633.0	NR_045050	71581.0	Mm.100110	NR_045050	ENSMUSG00000113985	9130015A21Rik	100043575|Gm4527	RIKEN cDNA 9130015A21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71599709-3	chr17	71599688	71599888	+	750.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1027.0	NR_027952	68789.0	Mm.75202	NR_015549	ENSMUSG00000085492	Trmt61b	1110039F03Rik|623451|Gm6431	tRNA methyltransferase 61B	ncRNA	1.056442701072	0.75982614659998	1.44538548657507	1.87387594223005	1.06574636858766	0.76333001272495	0.747562745172693	1.88570456299755	-0.459080676463277	0.750410038906325	0.998431161219273
Merged-chr8-120700116-3	chr8	120700003	120700203	+	848.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31783.0	NM_001293559	12857.0	Mm.386758	NM_009941	ENSMUSG00000031818	Cox4i1	AL024441|COX|COX IV-1|COXIV|Cox4|Cox4a|IV-1	cytochrome c oxidase subunit 4I1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-66442925-1	chr18	66442825	66443025	+	549.0	f1_c57bl6.idr	Intergenic	Intergenic	-15679.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	2.1438665306537	2.61185628254258	1.56552728678192	2.14724768037863	2.16151764301528	2.63128524230763	1.57557684154876	2.15819379480211	0.037513963213991	0.967569931082958	0.998431161219273
Merged-chr3-130729565-4	chr3	130729471	130729671	+	989.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005859, intron 1 of 4)	intron (NM_001005859, intron 1 of 4)	758.0	NM_001199350	619547.0	Mm.391636	NM_001199350		Rpl34-ps1	EG619547|Gm10239	ribosomal protein L34, pseudogene 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-57732056-4	chr3	57731944	57732144	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4013.0	NM_011883	24017.0	Mm.274360	NM_011883	ENSMUSG00000036503	Rnf13	2010001H16Rik|Rzf	ring finger protein 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-82845903-4	chr11	82845797	82845997	+	976.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164569, intron 1 of 7)	intron (NM_001164569, intron 1 of 7)	-16854.0	NM_026097	67338.0	Mm.341608	NM_026097	ENSMUSG00000020696	Rffl	1700051E09Rik|4930516L10Rik|BG080975|Carp2	ring finger and FYVE like domain containing protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88620119-1	chr3	88620019	88620219	+	641.0	f1_balb.idr	promoter-TSS (NM_008487)	promoter-TSS (NM_008487)	-987.0	NM_008487	16800.0	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-25286470-3	chr10	25286383	25286583	+	900.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018747, intron 2 of 7)	ID_B1|SINE|B4	12680.0	NM_018747	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-87704668-2	chr16	87704568	87704768	+	998.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007520, intron 1 of 4)	ORR1C1|LTR|ERVL-MaLR	5714.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26514484-2	chr17	26514384	26514584	+	627.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6012.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-110447472-3	chr12	110447386	110447586	+	897.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001135001, intron 1 of 13)	CpG	307.0	NM_001135001	26931.0	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123377452-8	chr5	123377390	123377590	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17308.0	NM_133917	208104.0	Mm.83277	NM_133917	ENSMUSG00000038342	Mlxip	AW228700|Mir|bHLHe36	MLX interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-37499945-1	chr19	37499845	37500045	+	570.0	f1_balb.idr	Intergenic	Intergenic	34691.0	NR_131009	78640.0	Mm.234265	NR_131008		1700122C19Rik	-	RIKEN cDNA 1700122C19 gene	ncRNA	0.286416985642837	-0.290617730955498	-0.295693956285655	-0.29962388125914	-0.305198136311877	-0.289476134558689	0.519124341215928	-0.298936469471607	0.672962209436858	0.794439326192487	1
Merged-chr10-77900282-2	chr10	77900203	77900403	+	749.875	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_145152, exon 2 of 2)	3' UTR (NM_145152, exon 2 of 2)	2233.0	NM_145152	237387.0	Mm.133301	NM_145152	ENSMUSG00000051652	Lrrc3	1300011L04Rik|C21orf102	leucine rich repeat containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-165461975-4	chr1	165461863	165462063	+	932.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027430, intron 1 of 4)	intron (NM_027430, intron 1 of 4)	755.0	NM_027430	70456.0	Mm.195625	NM_027430	ENSMUSG00000026568	Mpc2	0610006C01Rik|2010002I07Rik|2610205H19Rik|AA108335|Brp44|ESTM43	mitochondrial pyruvate carrier 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-50163031-7	chr6	50162921	50163121	+	904.892883	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361248, intron 5 of 13)	intron (NM_001361248, intron 5 of 13)	52161.0	NM_001361248	56524.0	Mm.41288	NM_008016	ENSMUSG00000038388	Mpp6	P55t|Pals2	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-80375089-2	chr18	80374989	80375189	+	849.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10835.0	NM_001190373	240444.0	Mm.279568	NM_001190373	ENSMUSG00000059852	Kcng2	AA591524	potassium voltage-gated channel, subfamily G, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-116023545-3	chr5	116023478	116023678	+	742.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031869, intron 1 of 6)	intron (NM_031869, intron 1 of 6)	850.0	NM_031869	19079.0	Mm.458152	NM_031869	ENSMUSG00000029513	Prkab1	1300015D22Rik|AU021155|E430008F22	protein kinase, AMP-activated, beta 1 non-catalytic subunit	protein-coding	1.63131161665436	2.39307568551222	1.05555281199634	1.37078372532699	1.15629417550759	1.48718195731323	0.819921485948934	0.802936779634662	-2.14040805671381	0.100252219048104	0.492692295523957
Merged-chr1-35860892-4	chr1	35860755	35860955	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-207545.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-79293966-4	chr18	79293879	79294079	+	980.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-184588.0	NM_053099	240427.0	Mm.312871	NM_053099	ENSMUSG00000024548	Setbp1	C130092E12|Seb|mKIAA0437	SET binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-77191271-1	chr5	77191171	77191371	+	683.0	f1_c57bl6.idr	Intergenic	Intergenic	19934.0	NM_001289767	69982.0	Mm.46106	NM_183284	ENSMUSG00000053030	Spink2	1700007F22Rik|AV038945|HUSI-II	serine peptidase inhibitor, Kazal type 2	protein-coding	2.79037358833138	4.18153175816772	3.13737744467766	3.28839287889315	1.86140381980426	3.27512132631585	2.72534397061877	1.45115983873675	-1.59465269924712	0.0403863650121764	0.286493264140378
Merged-chr2-126490815-4	chr2	126490734	126490934	+	931.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359975, intron 1 of 27)	intron (NM_001359975, intron 1 of 27)	719.0	NM_001080944	241633.0	Mm.222235	NM_001080944	ENSMUSG00000060131	Atp8b4	Im	ATPase, class I, type 8B, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-29382250-1	chr17	29382150	29382350	+	618.0	f1_c57bl6.idr	Intergenic	Intergenic	21336.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	1.87708795054639	2.78636827944795	3.43456582400606	3.23374934312775	1.5489635489523	1.2019415222442	1.70493497759048	1.11959882002037	-3.72195423795657	0.000377498056588927	0.00884613609951942
Merged-chr6-113334249-4	chr6	113334143	113334343	+	984.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_149720)	TTS (NR_149720)	7267.0	NM_010957	18294.0	Mm.43612	NM_010957	ENSMUSG00000030271	Ogg1	Mmh	8-oxoguanine DNA-glycosylase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-5187031-4	chr18	5186936	5187136	+	852.008301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21305.0	NR_153824	102637682.0	Mm.451914	NR_153824		Gm26682	Gm38715	predicted gene, 26682	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-94667098-1	chr8	94666998	94667198	+	969.3333130000001	f0_balb.idr	promoter-TSS (NM_024269)	promoter-TSS (NM_024269)	7.0	NM_024269	107566.0	Mm.393247	NM_024191	ENSMUSG00000031776	Arl2bp	1700010P10Rik|1700027H16Rik|6330544B05Rik|AI482273|AI849834|BART|Bart1	ADP-ribosylation factor-like 2 binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-29998262-1	chr7	29998162	29998362	+	612.0	f0_balb.idr	intron (NM_001167873, intron 6 of 9)	intron (NM_001167873, intron 6 of 9)	14307.0	NM_001167872	243905.0	Mm.322432	NM_001033355	ENSMUSG00000074221	Zfp568	C80731|Gm1691|Znf568|chato	zinc finger protein 568	protein-coding	1.08925438447799	3.13503863989061	0.911706590777875	0.886825160131009	1.47647956122381	1.69563777276236	2.0650459151899	1.72651192562823	-0.484670500149513	0.69013621400003	0.996533206832645
Merged-chr5-21414303-2	chr5	21414203	21414403	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029195, intron 1 of 18)	intron (NM_029195, intron 1 of 18)	10374.0	NM_029195	75172.0	Mm.426695	NM_029195	ENSMUSG00000064280	Ccdc146	4930528G09Rik|mKIAA1505	coiled-coil domain containing 146	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-87525360-4	chr6	87525235	87525435	+	986.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037727, intron 1 of 10)	intron (NM_001037727, intron 1 of 10)	7924.0	NM_001037727	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	2.73636546697336	2.08558570718758	1.36314239648568	2.24074836888251	2.82448326157688	2.26418975059051	2.99024340638985	1.79457143356006	0.746678958037201	0.4136617915588	0.895868984679148
Merged-chr17-19766315-1	chr17	19766215	19766415	+	555.0	f1_c57bl6.idr	Intergenic	L1Md_F|LINE|L1	-7048.0	NM_001104565	627636.0	Mm.469855	NM_001104565	ENSMUSG00000091771	Vmn2r103	EG627636|Vmn103	vomeronasal 2, receptor 103	protein-coding	0.789764142836152	1.55807281249268	0.0754599239660395	0.0668053002216272	0.256600280335324	0.0888656411590706	0.0779028621946906	0.0683297229912981	-3.78878973056182	0.0574070114163028	1
Merged-chr12-108631241-4	chr12	108631121	108631321	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163395, intron 1 of 12)	L1MEc|LINE|L1	-4532.0	NM_001163396	14026.0	Mm.238841	NM_007965	ENSMUSG00000021262	Evl	AI528774|b2b2600Clo	Ena-vasodilator stimulated phosphoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-91281302-2	chr13	91281202	91281402	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	-57315.0	NM_025770	66795.0	Mm.235385	NM_025770	ENSMUSG00000021619	Atg10	5330424L23Rik|5430428K15Rik|AI852123|APG10|Agp10|Apg10l|Apg10p|Atg10l	autophagy related 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-66256645-4	chr2	66256546	66256746	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290669)	promoter-TSS (NM_001290669)	-29.0	NM_001290669	73668.0	Mm.250868	NM_001047604	ENSMUSG00000034848	Ttc21b	2410066K11Rik|Thm1|aln|mKIAA1992	tetratricopeptide repeat domain 21B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-3983162-4	chr18	3983053	3983253	+	881.716675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-182679.0	NM_026092	67328.0	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-3415553-2	chr7	3415453	3415653	+	955.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_133190)	TTS (NM_133190)	487.0	NR_128566	104795667.0		NR_128566	ENSMUSG00000094210	Gm23450	Mir935|mmu-mir-935	predicted gene, 23450	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-129725038-4	chr5	129724984	129725184	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008095)	promoter-TSS (NM_008095)	9.0	NM_008095	14467.0	Mm.12468	NM_008095	ENSMUSG00000029432	Nipsnap2	AV006093|Gbas	nipsnap homolog 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-102624381-2	chr15	102624281	102624481	+	828.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310067, intron 1 of 11)	intron (NM_001310067, intron 1 of 11)	1083.0	NM_001310070	223922.0	Mm.208714	NM_146065	ENSMUSG00000099083	Atf7	1110012F10Rik|9430065F09Rik|AI549878|C130020M04Rik	activating transcription factor 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-165762094-4	chr1	165762002	165762202	+	988.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR11B|LTR|ERVK	-1656.0	NR_149310	433375.0	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-72214706-1	chr1	72214606	72214806	+	674.5	f0_balb.idr	Intergenic	Intergenic	-2392.0	NM_001357488	381269.0	Mm.422636	NM_001005423	ENSMUSG00000039395	Mreg	Gm974|Wdt2|dsu	melanoregulin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-58590794-2	chr13	58590694	58590894	+	845.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_022317, intron 1 of 17)	B3|SINE|B2	20083.0	NM_022317	114304.0	Mm.18188	NM_022317	ENSMUSG00000021553	Slc28a3	Cnt3	solute carrier family 28 (sodium-coupled nucleoside transporter), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-113513724-4	chr7	113513629	113513829	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027379)	promoter-TSS (NM_027379)	-105.0	NM_001285831	67420.0	Mm.206919	NM_026143	ENSMUSG00000030759	Far1	2600011M19Rik|2900034E22Rik|3732409C05Rik|AI850429|Mlstd2	fatty acyl CoA reductase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-53626195-3	chr7	53626089	53626289	+	821.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	265700.0	NR_105746	102466619.0		NR_105746	ENSMUSG00000099176	Mir6238	Gm27982|mmu-mir-6238	microRNA 6238	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-26983724-2	chr5	26983624	26983824	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001198886, intron 1 of 25)	intron (NM_001198886, intron 1 of 25)	-65475.0	NM_207282	13483.0	Mm.42078	NM_010075	ENSMUSG00000061576	Dpp6	B930011P16Rik|D5Buc3|D5Buc4|D5Buc5|DPP VI|Dpp-6|Gm1377|In(5)6H-p|Peplb|Rw	dipeptidylpeptidase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-65435964-4	chr5	65435866	65436066	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009466)	promoter-TSS (NM_009466)	-124.0	NM_009466	22235.0	Mm.344831	NM_009466	ENSMUSG00000029201	Ugdh	Udpgdh	UDP-glucose dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5209088-2	chr17	5208988	5209188	+	599.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 4 of 19)	B2_Mm1a|SINE|B2	209679.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-36903760-3	chr17	36903659	36903859	+	929.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146077, intron 3 of 7)	ID_B1|SINE|B4	5629.0	NM_146077	224762.0	Mm.213417	NM_146077	ENSMUSG00000058063	Trim31	BC026666|HCG1|HCGI|RNF	tripartite motif-containing 31	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-143058459-1	chr5	143058359	143058559	+	674.0	f0_balb.idr	intron (NM_001359851, intron 12 of 15)	intron (NM_001359851, intron 12 of 15)	54561.0	NM_207110	108086.0	Mm.381440	NM_080561	ENSMUSG00000045078	Rnf216	2810055G22Rik|AI647468|AU019462|C86502|F830018F18Rik|TRIAD3|UIP83|Ubce7ip1	ring finger protein 216	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-92563076-3	chr2	92562981	92563181	+	837.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29125.0	NR_106080	102466819.0		NR_106080	ENSMUSG00000099223	Mir7221	Gm27378|mmu-mir-7221	microRNA 7221	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-181014908-4	chr1	181014828	181015028	+	975.783325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010145, intron 1 of 8)	intron (NM_010145, intron 1 of 8)	2641.0	NM_001312918	13849.0	Mm.9075	NM_010145	ENSMUSG00000038776	Ephx1	EH|Eph-1|Eph1|Epxh1|mEH	epoxide hydrolase 1, microsomal	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-26961298-2	chr8	26961198	26961398	+	683.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16038.0	NM_001101502	353310.0	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-30659928-4	chr13	30659831	30660031	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001037955)	promoter-TSS (NM_001037955)	-128.0	NM_001037955	105352.0	Mm.289646	NM_134068	ENSMUSG00000069255	Dusp22	JKAP|JSP1|LMW-DSP2|MKPX	dual specificity phosphatase 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119946922-3	chr11	119946823	119947023	+	912.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037754, intron 1 of 13)	intron (NM_001037754, intron 1 of 13)	3831.0	NM_130862	108100.0	Mm.197534	NM_130862	ENSMUSG00000025372	Baiap2	IRSp53|R75030	brain-specific angiogenesis inhibitor 1-associated protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3235856-3	chr12	3235768	3235968	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015551)	promoter-TSS (NR_015551)	77.0	NR_015551	74173.0	Mm.309774	NM_028796	ENSMUSG00000079179	Rab10os	1700012B15Rik|1810036A22Rik	RAB10, member RAS oncogene family, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-85184274-2	chr11	85184174	85184374	+	633.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13178.0	NM_028589	73634.0	Mm.48850	NM_028589	ENSMUSG00000018479	1700125H20Rik	-	RIKEN cDNA 1700125H20 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84420722-3	chr8	84420611	84420811	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252060, intron 1 of 47)	L1ME1|LINE|L1	5347.0	NM_001252061	12286.0	Mm.334658	NM_007578	ENSMUSG00000034656	Cacna1a	APCA|BI|Caca1a|Cacnl1a4|Cav2.1|Ccha1a|EA2|FHM|HPCA|MHP|MHP1|SCA6|alpha1A|la|nmf352|rkr|smrl|tg	calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	protein-coding	2.51831220158223	2.7801148253289	1.67523042589681	1.5890091140972	6.18329475723484	6.24961820475726	5.40648601336022	6.08310018523511	5.21793126551788	4.84038221494301e-20	5.80749058148862e-17
Merged-chr11-68503019-4	chr11	68502927	68503127	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081566)	promoter-TSS (NM_001081566)	8.0	NR_126154	104709.0	Mm.234573	NM_001004435	ENSMUSG00000046207	Pik3r6	BB220380|p84|p84 PIKAP|p87(PIKAP)|p87PIKAP	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-141033651-4	chr2	141033555	141033755	+	909.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013802, intron 5 of 18)	MLT1C|LTR|ERVL-MaLR	-362179.0	NM_178382	71436.0	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-58545680-2	chr9	58545580	58545780	+	661.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4740.0	NM_133983	102657.0	Mm.5356	NM_133983	ENSMUSG00000035914	Cd276	6030411F23Rik|AU016588|B7RP-2|B7h3	CD276 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-118743615-3	chr2	118743573	118743773	+	816.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Plat_L3|LINE|CR1	-2085.0	NM_001301269	100043272.0	Mm.398072	NM_001301269	ENSMUSG00000074918	Inafm2	5430417L22Rik	InaF motif containing 2	protein-coding	0.292707883218865	0.389920139439968	0.478140001237157	0.0549546575516791	0.183143110977461	0.0642782215582294	0.0595736399899745	0.452135345059607	-0.89822051698192	0.650296376675714	1
Merged-chr3-131469801-2	chr3	131469701	131469901	+	596.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	-94967.0	NM_001289479	23971.0	Mm.244912	NM_011863	ENSMUSG00000028032	Papss1	AI325286|Asapk|SK1	3'-phosphoadenosine 5'-phosphosulfate synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-60340937-2	chr10	60340837	60341037	+	828.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252635, intron 37 of 68)	MTD|LTR|ERVL-MaLR	-5914.0	NM_001159572	74048.0	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-142374255-2	chr7	142374155	142374355	+	840.833374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347541)	promoter-TSS (NM_001347541)	-509.0	NM_001347541	320802.0	Mm.154486	NM_177265	ENSMUSG00000045777	Ifitm10	6330512M04Rik|AI848576|DSPA3	interferon induced transmembrane protein 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131287480-4	chr1	131287383	131287583	+	855.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001081011, exon 23 of 23)	3' UTR (NM_001081011, exon 23 of 23)	-7920.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95623728-2	chr3	95623628	95623828	+	827.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C|LTR|ERVK	-1252.0	NM_019561	56205.0	Mm.241365	NM_019561	ENSMUSG00000038619	Ensa	1700020C18Rik|2610007F17Rik|AI451924	endosulfine alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-29323969-2	chr19	29323869	29324069	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013754, intron 1 of 1)	intron (NM_013754, intron 1 of 1)	1349.0	NM_013754	27356.0	Mm.306511	NM_013754	ENSMUSG00000050957	Insl6	RIF1	insulin-like 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-77368335-4	chr15	77368239	77368439	+	924.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30771.0	NM_029419	75761.0	Mm.232636	NM_029419	ENSMUSG00000010601	Apol7a	9130022K13Rik|Apol3	apolipoprotein L 7a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-156542944-4	chr2	156542836	156543036	+	864.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_013510, exon 22 of 22)	3' UTR (NM_013510, exon 22 of 22)	-4640.0	NM_026661	68295.0	Mm.253648	NM_026661	ENSMUSG00000027628	Aar2	0610011L14Rik	AAR2 splicing factor homolog	protein-coding	0.832930624615839	1.08455430860471	1.03948916749201	0.571239862082859	0.840126126793252	1.09459591871602	1.04950609598526	0.572390762483349	0.0402919950699327	0.978878015109924	1
Merged-chr17-10320753-2	chr17	10320653	10320853	+	570.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_037588, exon 1 of 1)	non-coding (NR_037588, exon 1 of 1)	834.0	NR_037588	100526796.0	Mm.384135	NR_037588		Cahm	B930003M22Rik	colon adenocarcinoma hypermethylated RNA	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-30468998-4	chr15	30468863	30469063	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355502, intron 2 of 21)	intron (NM_001355502, intron 2 of 21)	296370.0	NM_008729	18163.0	Mm.321648	NM_008729	ENSMUSG00000022240	Ctnnd2	Catnd2|Nprap|neurojugin	catenin (cadherin associated protein), delta 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-104046824-4	chr5	104046706	104046906	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028794)	promoter-TSS (NM_028794)	-58.0	NM_028794	74167.0	Mm.241484	NM_028794	ENSMUSG00000029310	Nudt9	1190002C07Rik|ADPR-PPase|AI462474	nudix (nucleoside diphosphate linked moiety X)-type motif 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117989621-4	chr11	117989549	117989749	+	814.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151726, intron 1 of 9)	intron (NR_151726, intron 1 of 9)	2792.0	NR_151726	74451.0	Mm.28864	NM_133757	ENSMUSG00000017715	Pgs1	2610019F11Rik|4933424M23Rik|SAF	phosphatidylglycerophosphate synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-99327252-4	chr5	99327135	99327335	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-74308.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	4.10466471969521	4.41071707233439	4.37744225052317	2.86206649819766	4.08830274868023	3.97494711618568	5.00717859047347	3.87049638284167	0.344315960267583	0.493659835594092	0.935679785535167
Merged-chr5-135630717-3	chr5	135630609	135630809	+	853.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-1945.0	NM_001357037	215160.0	Mm.295438	NM_031398	ENSMUSG00000039917	Rhbdd2	0610011L13Rik|AI480532|Rhbdl7|Usmg1	rhomboid domain containing 2	protein-coding	-1.18380838841903	-1.16011125635148	-1.00536424934779	-1.1792404808033	-1.18337620038043	-1.15783536144903	-1.00298675603091	-0.878689637535577	1.33963021058507	0.662888867835562	1
Merged-chr14-120360347-3	chr14	120360242	120360442	+	926.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360376, intron 2 of 8)	intron (NM_001360376, intron 2 of 8)	53890.0	NM_001360376	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-149946693-4	chr1	149946584	149946784	+	885.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008869, intron 1 of 17)	intron (NM_008869, intron 1 of 17)	14606.0	NM_008869	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-48876701-4	chr7	48876569	48876769	+	858.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013368, intron 4 of 12)	intron (NM_001013368, intron 4 of 12)	4372.0	NM_001013368	108961.0	Mm.240566	NM_001013368	ENSMUSG00000046179	E2f8	4432406C08Rik|AA410048	E2F transcription factor 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19561147-2	chr7	19561047	19561247	+	884.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_199149, intron 1 of 12)	intron (NM_199149, intron 1 of 12)	1251.0	NM_199149	232947.0	Mm.219662	NM_199149	ENSMUSG00000051403	Ppp1r37	Gm158|Lrrc68	protein phosphatase 1, regulatory subunit 37	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-31172452-4	chr7	31172343	31172543	+	774.712524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	10085.0	NR_046062	100038516.0	Mm.387223	NR_046062	ENSMUSG00000100985	Gm10640	EG668322	predicted gene 10640	ncRNA	3.91809391786314	4.0786085132955	3.33098791595422	2.44175361229596	3.94841685983587	4.10670853505714	3.62792949340361	3.43469543920012	0.321935419080763	0.565647034091239	0.961915304974017
Merged-chr5-125509707-1	chr5	125509607	125509807	+	663.666687	f1_c57bl6.idr	intron (NM_030210, intron 9 of 17)	PB1D10|SINE|Alu	-22711.0	NM_001190352	208151.0	Mm.40397	NM_001190352	ENSMUSG00000070498	Tmem132b	AK220418|mKIAA1786	transmembrane protein 132B	protein-coding	2.30998659436855	1.53441136602373	2.12389053640813	1.04147997723779	1.65743561159283	1.99962988030079	1.66020482823016	1.04455640375594	-0.636467421886817	0.588222758002652	0.968410553480753
Merged-chr10-127320965-2	chr10	127320865	127321065	+	615.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285785)	promoter-TSS (NM_001285785)	-999.0	NM_001285785	216445.0	Mm.227198	NM_146011	ENSMUSG00000040345	Arhgap9	AU043488	Rho GTPase activating protein 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-97960668-2	chr16	97960568	97960768	+	743.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175428, intron 1 of 2)	intron (NM_175428, intron 1 of 2)	1954.0	NM_001081685	114565.0	Mm.474489	NM_175428	ENSMUSG00000046962	Zbtb21	5430437K12Rik|B430213I24Rik|Zfp295|Znf295|mKIAA1227	zinc finger and BTB domain containing 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-123996006-4	chr4	123995901	123996101	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	78568.0	NM_017475	54170.0	Mm.220922	NM_017475	ENSMUSG00000028646	Rragc	AU041672|Gtr2|RAGC|TIB929|YGR163W	Ras-related GTP binding C	protein-coding	4.78695344488806	5.31901805538816	3.73918379089961	4.91244447350215	4.46203950270617	3.81089487010218	4.23136790468154	5.29170223513807	-0.280947542389443	0.531714139032379	0.951218624270947
Merged-chr17-36020900-4	chr17	36020795	36020995	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008207)	promoter-TSS (NM_008207)	-335.0	NM_008207	15042.0	Mm.439654	NM_008207	ENSMUSG00000053835	H2-T24	H-2T24	histocompatibility 2, T region locus 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-88047997-4	chr6	88047897	88048097	+	927.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2727.0	NM_009005	19349.0	Mm.333233	NM_009005	ENSMUSG00000079477	Rab7	Rab7a	RAB7, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-21651652-4	chr10	21651549	21651749	+	947.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39196.0	NR_045843	432436.0	Mm.244553	NM_001004162	ENSMUSG00000056716	Gm5420	EG432436	predicted gene 5420	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-15800664-2	chr11	15800564	15800764	+	562.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	-457060.0	NM_001290539	211739.0	Mm.284015	NM_145967	ENSMUSG00000048834	Vstm2a	Vstm2	V-set and transmembrane domain containing 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131866562-4	chr1	131866448	131866648	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144875)	promoter-TSS (NM_144875)	-729.0	NM_144875	226422.0	Mm.34027	NM_144875	ENSMUSG00000026433	Rab29	Rab7l1	RAB29, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102129468-2	chr12	102129368	102129568	+	612.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001362345, exon 1 of 17)	exon (NM_001362345, exon 1 of 17)	741.0	NM_172152	238384.0	Mm.312448	NM_172152	ENSMUSG00000041771	Slc24a4	A930002M03Rik|AW492432|NCKX4	solute carrier family 24 (sodium/potassium/calcium exchanger), member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-49172222-2	chr13	49172122	49172322	+	646.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15325.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-22185756-4	chr8	22185626	22185826	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001004140)	promoter-TSS (NM_001004140)	93.0	NM_001004140	80986.0	Mm.22448	NM_001004140	ENSMUSG00000037725	Ckap2	AI461656|AW228814|LB1	cytoskeleton associated protein 2	protein-coding	1.95284722066926	2.0124291566117	3.85486763839043	3.29139233841806	2.87221278390624	1.78111429903107	2.84251192850791	2.08250807865871	-1.0033128458161	0.233231561018162	0.728474210976025
Merged-chr7-16873435-2	chr7	16873352	16873552	+	645.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_152128, intron 1 of 1)	B1_Mus1|SINE|Alu	1434.0	NR_152128	320950.0	Mm.420078	NR_152128	ENSMUSG00000097842	9330104G04Rik	-	RIKEN cDNA 9330104G04 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-149265054-4	chr5	149264960	149265160	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001308462)	promoter-TSS (NM_001308462)	56.0	NM_009663	11690.0	Mm.19844	NM_009663	ENSMUSG00000060063	Alox5ap	Flap	arachidonate 5-lipoxygenase activating protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-52269169-3	chr3	52269077	52269277	+	949.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_019739, exon 1 of 3)	exon (NM_019739, exon 1 of 3)	840.0	NM_019739	56458.0	Mm.29891	NM_019739	ENSMUSG00000044167	Foxo1	AI876417|Afxh|FKHR|Fkhr1|Foxo1a	forkhead box O1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120114023-4	chr8	120113921	120114121	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163762)	promoter-TSS (NM_001163762)	-131.0	NM_001163762	234797.0	Mm.101958	NM_172286	ENSMUSG00000031824	6430548M08Rik	AW049007|Kiaa0513|mKIAA0513	RIKEN cDNA 6430548M08 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-94967205-1	chr8	94967105	94967305	+	849.0	f1_balb.idr	Intergenic	Intergenic	-9904.0	NM_001198894	14766.0	Mm.290834	NM_018882	ENSMUSG00000031785	Adgrg1	Cyt28|Gpr56|TM7LN4|TM7XN1	adhesion G protein-coupled receptor G1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118686092-2	chr9	118685992	118686192	+	908.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 13 of 27)	intron (NM_133721, intron 13 of 27)	-25600.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-117669968-1	chr1	117669868	117670068	+	540.0	f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	640760.0	NR_153836	22099.0	Mm.426637	NM_011650	ENSMUSG00000026374	Tsn	2610034C24Rik|AU040286|C3PO|TB-RBP	translin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24360104-2	chr17	24359999	24360199	+	586.0	f0_balb.idr|f1_balb.idr	intron (NM_013855, intron 2 of 32)	intron (NM_013855, intron 2 of 32)	8076.0	NM_001039581	27410.0	Mm.239470	NM_013855	ENSMUSG00000024130	Abca3	1810036E22Rik|ABC-C|Abc3	ATP-binding cassette, sub-family A (ABC1), member 3	protein-coding	2.13813159638318	1.27351069470061	1.44634511706021	0.938563309292589	2.07309597551242	2.90493566259497	1.45897509108398	0.942586472369416	1.32860460974374	0.26771885726055	0.770373259746622
Merged-chr5-122697493-3	chr5	122697444	122697644	+	968.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10000.0	NM_001310720	18438.0	Mm.290884	NM_011026	ENSMUSG00000029470	P2rx4	AI504491|AW555605|D5Ertd444e|P2X4	purinergic receptor P2X, ligand-gated ion channel 4	protein-coding	3.12389856475862	1.52234016861742	3.17567048335639	3.01096033143508	3.14941630850917	1.53270072974893	2.49819771683497	2.9448730625606	-0.343108016153094	0.694366147995415	0.997725154928023
Merged-chr14-54731591-4	chr14	54731493	54731693	+	721.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016972, intron 7 of 10)	intron (NM_016972, intron 7 of 10)	-19419.0	NM_207131	110794.0	Mm.236223	NM_207131	ENSMUSG00000052435	Cebpe	C/EBPe|C/EBPepsilon|CRP1|Gm294	CCAAT/enhancer binding protein (C/EBP), epsilon	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46148536-4	chr19	46148435	46148635	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008852)	promoter-TSS (NM_008852)	-210.0	NM_008852	18742.0	Mm.6255	NM_008852	ENSMUSG00000025229	Pitx3	Ptx3|ak	paired-like homeodomain transcription factor 3	protein-coding	0.378416353663676	0.614988702134579	0.683028593559329	0.127490664676634	0.121470335102487	0.138550834254244	0.132979883669681	0.545791753681406	-1.65928066299717	0.41767236670821	1
Merged-chr7-83723110-2	chr7	83723010	83723210	+	611.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360088, intron 1 of 18)	intron (NM_001360088, intron 1 of 18)	9288.0	NM_001360087	16170.0	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-44146137-3	chr14	44146037	44146237	+	851.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	25234.0	NM_029131	74954.0	Mm.425904	NM_029131	ENSMUSG00000072595	4930503E14Rik	-	RIKEN cDNA 4930503E14 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-44364484-2	chr15	44364384	44364584	+	797.6999509999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63627.0	NM_175009	223527.0	Mm.291828	NM_175009	ENSMUSG00000022338	Eny2	1810057B09Rik|6720481I12|DC6|Ey2	ENY2 transcription and export complex 2 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-31275253-4	chr16	31275159	31275359	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025800)	promoter-TSS (NM_025800)	18.0	NM_025800	66849.0	Mm.291593	NM_025800	ENSMUSG00000047714	Ppp1r2	0610025N14Rik|2310007G06Rik|4930440J04Rik|5430408E15Rik|D16Ertd248e|I-2|IPP-2	protein phosphatase 1, regulatory (inhibitor) subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-27678737-2	chr15	27678637	27678837	+	862.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198301, intron 1 of 6)	intron (NM_198301, intron 1 of 6)	2805.0	NM_001242424	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-30041678-2	chr5	30041578	30041778	+	626.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28564.0	NM_031168	16193.0	Mm.1019	NM_031168	ENSMUSG00000025746	Il6	Il-6	interleukin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-60823369-2	chr2	60823269	60823469	+	728.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001141932, intron 2 of 14)	intron (NM_001141932, intron 2 of 14)	58069.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97517988-3	chr6	97517840	97518040	+	762.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	-30120.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	-0.568976454529253	-0.906873180349519	-0.914461625235034	-0.916374098489758	-0.665031983486229	-0.9043811416984	-0.744173952361438	-0.916040660635131	0.164676211816981	0.955457420078736	1
Merged-chr2-45069497-3	chr2	45069390	45069590	+	651.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355291, intron 2 of 9)	intron (NM_001355291, intron 2 of 9)	40787.0	NM_001289521	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-24899389-4	chr4	24899291	24899491	+	852.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026742, intron 2 of 2)	L2a|LINE|L2	1308.0	NM_026742	68493.0	Mm.204831	NM_026742	ENSMUSG00000028261	Ndufaf4	1110007M04Rik|3000003G13Rik|AW214064	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-22816466-4	chr2	22816358	22816558	+	788.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019456, intron 1 of 13)	ORR1E|LTR|ERVL-MaLR	42131.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-29389507-2	chr5	29389430	29389630	+	885.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11140.0	NM_020295	56873.0	Mm.41572	NM_020295	ENSMUSG00000010721	Lmbr1	1110048D14Rik|AU017641	limb region 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-50669468-4	chr2	50669378	50669578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-240206.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-59003913-4	chr13	59003811	59004011	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025074, intron 13 of 17)	intron (NM_001025074, intron 13 of 17)	196214.0	NM_001025074	18212.0	Mm.130054	NM_008745	ENSMUSG00000055254	Ntrk2	GP145-TrkB/GP95-TrkB|Tkrb|trk-B|trkB	neurotrophic tyrosine kinase, receptor, type 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139449292-4	chr5	139449207	139449407	+	875.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028469, intron 2 of 4)	intron (NM_028469, intron 2 of 4)	11227.0	NM_028469	73212.0	Mm.84294	NM_028469	ENSMUSG00000053553	3110082I17Rik	AW411904	RIKEN cDNA 3110082I17 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-105010581-3	chr12	105010466	105010666	+	858.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172500)	promoter-TSS (NM_172500)	-757.0	NM_172500	212073.0	Mm.212688	NM_172500	ENSMUSG00000054150	Syne3	KASH3|nesprin-3	spectrin repeat containing, nuclear envelope family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-79158421-4	chr3	79158338	79158538	+	978.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	-12563.0	NM_001099624	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-26576381-3	chr10	26576281	26576481	+	902.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	98270.0	NR_033633	667572.0	Mm.482728	NR_033633	ENSMUSG00000098179	Gm8709	EG667572	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-68981012-4	chr3	68980900	68981100	+	995.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026641, intron 5 of 19)	RSINE1|SINE|B4	23570.0	NM_026641	68259.0	Mm.389451	NM_026641	ENSMUSG00000027778	Ift80	4921524P20Rik|Wdr56|mKIAA1374	intraflagellar transport 80	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-95960922-8	chr13	95960813	95961013	+	818.144043	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_029210, exon 13 of 13)	3' UTR (NM_029210, exon 13 of 13)	-68991.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	1.91624212043854	1.18163816118276	1.62350980287582	1.89714292605075	2.72429008711149	1.1883598075249	1.97250136701577	2.86707378008025	1.63384839161691	0.123324549420745	0.55050052805767
Merged-chr9-85569053-4	chr9	85568974	85569174	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	180260.0	NM_001081282	108837.0	Mm.22315	NM_175371	ENSMUSG00000035941	Ibtk	5430411K16Rik|AA409502|BTKI|mKIAA1417	inhibitor of Bruton agammaglobulinemia tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-20829975-4	chr14	20829872	20830072	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6690.0	NM_008873	18792.0	Mm.4183	NM_008873	ENSMUSG00000021822	Plau	u-PA|uPA	plasminogen activator, urokinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21526596-2	chr9	21526496	21526696	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001198794, intron 1 of 6)	intron (NM_001198794, intron 1 of 6)	419.0	NM_206536	382062.0	Mm.325205	NM_206536	ENSMUSG00000057191	AB124611	Gm1706	cDNA sequence AB124611	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32875269-2	chr2	32875169	32875369	+	750.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146119)	promoter-TSS (NM_146119)	-865.0	NM_146119	227737.0	Mm.301646	NM_146119	ENSMUSG00000026796	Fam129b	9130404D14Rik	family with sequence similarity 129, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41597320-2	chr19	41597216	41597416	+	917.2999880000001	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	8665.0	NR_106166	102465884.0		NR_106166	ENSMUSG00000098286	Mir8091	Gm27575|mmu-mir-8091	microRNA 8091	ncRNA	4.35206507855184	3.77512620378498	3.49652817488002	4.31475131857686	2.36842079863471	2.8647873428819	2.21302232729234	3.0411444058092	-2.16402834910773	0.000257821148180318	0.00653522141380449
Merged-chr19-45585042-3	chr19	45584940	45585140	+	929.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013907, intron 6 of 8)	intron (NM_013907, intron 6 of 8)	24455.0	NM_172639	226162.0	Mm.21978	NM_172639	ENSMUSG00000041035	Dpcd	Ndac	deleted in primary ciliary dyskinesia	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-18418744-2	chr16	18418644	18418844	+	806.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007744, intron 1 of 4)	B4A|SINE|B4	-5250.0	NM_001111063	12846.0	Mm.100940	NM_007744	ENSMUSG00000000326	Comt	Comt1|D16Wsu103e|D330014B15Rik	catechol-O-methyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-179645888-4	chr1	179645780	179645980	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR41|LTR|ERVL	-22351.0	NM_178653	109232.0	Mm.136458	NM_178653	ENSMUSG00000038936	Sccpdh	AW214504|C330023F11Rik	saccharopine dehydrogenase (putative)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-156996657-4	chr1	156996556	156996756	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57030.0	NM_001357391	78255.0	Mm.28376	NM_023884	ENSMUSG00000026594	Ralgps2	1810020P17Rik|2210408F11Rik|4921528G01Rik|9130014M22Rik|AU043409|AW046161	Ral GEF with PH domain and SH3 binding motif 2	protein-coding	5.81931411784835	6.16034990801486	6.01496608913436	6.04839839684675	5.73014933164034	6.04478700253087	5.02427327605364	6.00005271613821	-0.287287092155597	0.27723154416376	0.781366007374687
Merged-chr12-76551505-3	chr12	76551409	76551609	+	948.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153804, intron 1 of 18)	intron (NM_153804, intron 1 of 18)	-3584.0	NR_046044	100504549.0	Mm.440349	NR_046044	ENSMUSG00000112388	AI463170	-	expressed sequence AI463170	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-109451633-4	chr3	109451529	109451729	+	963.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020505, intron 2 of 26)	intron (NM_020505, intron 2 of 26)	110946.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	4.1577933232747	3.8714224640369	4.03674875788286	4.8908904053861	4.76891280670087	3.61677958501592	3.38325027702004	4.18472442456422	-0.251008335776499	0.607126381526626	0.974576632476413
Merged-chr7-25084821-4	chr7	25084701	25084901	+	754.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7994.0	NM_175477	232976.0	Mm.41568	NM_175477	ENSMUSG00000045252	Zfp574	A630056B21Rik|Znf574	zinc finger protein 574	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-159591779-8	chr2	159591668	159591868	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-355573.0	NR_040498	71081.0	Mm.383491	NR_040498	ENSMUSG00000085198	4933416E03Rik	-	RIKEN cDNA 4933416E03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-75167320-2	chr8	75167220	75167420	+	764.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-46624.0	NM_029182	75141.0	Mm.179267	NM_029182	ENSMUSG00000034472	Rasd2	4930526B11Rik|AU045414|Rhes|TEM-2|TEM2	RASD family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-92457140-2	chr2	92457040	92457240	+	844.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_211358, intron 1 of 1)	intron (NM_211358, intron 1 of 1)	2654.0	NM_211358	228368.0	Mm.273990	NM_145832	ENSMUSG00000049922	Slc35c1	E430007K15Rik|fuct1	solute carrier family 35, member C1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-109862736-2	chr9	109862636	109862836	+	886.1666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12843.0	NM_007658	12530.0	Mm.307103	NM_007658	ENSMUSG00000032477	Cdc25a	D9Ertd393e	cell division cycle 25A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-80278728-1	chr8	80278628	80278828	+	554.0	f1_balb.idr	Intergenic	Intergenic	-215317.0	NM_010369	14934.0	Mm.13123	NM_010369	ENSMUSG00000051839	Gypa	AI853584|CD235a|GPA	glycophorin A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-13185085-2	chr10	13184985	13185185	+	643.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_181470, intron 4 of 10)	Lx9|LINE|L1	-7062.0	NM_029172	75122.0	Mm.159433	NM_029172	ENSMUSG00000019815	Zc2hc1b	4930519B02Rik|Fam164b	zinc finger, C2HC-type containing 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-30745292-5	chr13	30745170	30745370	+	801.733337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3963.0	NM_001347508	16364.0	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4782683-4	chr16	4782592	4782792	+	976.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358082, intron 1 of 5)	intron (NM_001358082, intron 1 of 5)	6770.0	NM_001358078	66626.0	Mm.157648	NM_025670	ENSMUSG00000004071	Cdip1	2700048O17Rik|5730403B10Rik|AU018521|AW742692|CDIP	cell death inducing Trp53 target 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-49781818-4	chr16	49781725	49781925	+	962.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73829.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-85581784-1	chr6	85581684	85581884	+	543.0	f1_balb.idr	Intergenic	ERVL-B4-int|LTR|ERVL	-5747.0	NM_145223	236266.0	Mm.246967	NM_145223	ENSMUSG00000063810	Alms1	bbb	ALMS1, centrosome and basal body associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-148173448-2	chr4	148173348	148173548	+	823.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12780.0	NM_176848	230904.0	Mm.262287	NM_176848	ENSMUSG00000041556	Fbxo2	FBG1|FBX2|Fbs1|Fbs2|NFB42|Prpl4	F-box protein 2	protein-coding	-0.790165559603664	-1.02489500587938	-1.03585533914581	-1.03984441570573	-0.903790072809063	-1.02251985593842	-0.719761904227202	-1.03952722498986	0.715062130495518	0.813535411749648	1
Merged-chr4-136202602-2	chr4	136202502	136202702	+	934.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3763.0	NM_001008232	230837.0	Mm.77788	NM_001008232	ENSMUSG00000036995	Asap3	9430088F20Rik|Ddefl1|Gm140|UPLC1	ArfGAP with SH3 domain, ankyrin repeat and PH domain 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-25599918-2	chr8	25599818	25600018	+	609.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1683.0	NM_001308481	234135.0	Mm.217337	NM_001001735	ENSMUSG00000054823	Nsd3	6720429E03|A530023P05|AI528490|WHISTLE|Whsc1l1	nuclear receptor binding SET domain protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-63555687-2	chr9	63555587	63555787	+	648.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_030068, intron 5 of 21)	intron (NM_030068, intron 5 of 21)	46806.0	NM_030068	78250.0	Mm.444612	NM_030068	ENSMUSG00000037801	Iqch	4921504K03Rik	IQ motif containing H	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-180227568-6	chr2	180227244	180227444	+	861.477783	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1485.0	NM_001081171	16776.0	Mm.4339	NM_001081171	ENSMUSG00000015647	Lama5	AA408760|AA408762|AI853660|[a]5|laminin-511|mKIAA0533	laminin, alpha 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95930202-4	chr3	95930123	95930323	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253758, intron 1 of 4)	CpG	966.0	NM_023210	66471.0	Mm.218657	NM_023210	ENSMUSG00000015749	Anp32e	2810018A15Rik|AI047746|AI326868|CPD1|LANP-L|LANPL|mLANP-L	acidic (leucine-rich) nuclear phosphoprotein 32 family, member E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-109922421-3	chr13	109922323	109922523	+	760.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011056, intron 8 of 16)	intron (NM_011056, intron 8 of 16)	18614.0	NR_035442	100316683.0		NR_035442	ENSMUSG00000084651	Mir1904	Mirn1904|mmu-mir-1904	microRNA 1904	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-122047834-4	chr10	122047733	122047933	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001242411)	promoter-TSS (NM_001242411)	-518.0	NM_001081037	117600.0	Mm.288698	NM_001081037	ENSMUSG00000020121	Srgap1	4930572H05Rik|Arhgap13	SLIT-ROBO Rho GTPase activating protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-107662204-2	chr7	107662104	107662304	+	956.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008905, intron 3 of 24)	intron (NM_008905, intron 3 of 24)	-3274.0	NM_001357437	19024.0	Mm.2817	NM_008905	ENSMUSG00000036528	Ppfibp2	Cclp1	PTPRF interacting protein, binding protein 2 (liprin beta 2)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-113918882-4	chr5	113918780	113918980	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10174.0	NM_011779	23790.0	Mm.260158	NM_011779	ENSMUSG00000004530	Coro1c	AL022675|AW455561|AW548837	coronin, actin binding protein 1C	protein-coding	4.78696737024027	4.08148990309572	4.78847052961539	4.31847946731023	4.32717111639281	4.49979499596595	3.81819887543464	3.92551596541748	-0.472445839522149	0.25216071299942	0.749857295414832
Merged-chr12-3238774-6	chr12	3238648	3238848	+	926.7777710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015551, intron 4 of 6)	intron (NR_015551, intron 4 of 6)	2957.0	NR_015551	74173.0	Mm.309774	NM_028796	ENSMUSG00000079179	Rab10os	1700012B15Rik|1810036A22Rik	RAB10, member RAS oncogene family, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-148994605-2	chr6	148994505	148994705	+	829.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177192, intron 20 of 20)	intron (NM_177192, intron 20 of 20)	-48135.0	NM_001361398	56306.0	Mm.18637	NM_019643	ENSMUSG00000039985	Fam60a	Ppcs1|Pptcs1|Sinhcaf|Tera	family with sequence similarity 60, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-12437998-2	chr19	12437909	12438109	+	884.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER12C|LTR|ERVK	10104.0	NM_019540	56093.0	Mm.285849	NM_019540	ENSMUSG00000040065	Pfpl	Epcs5|Epcs50	pore forming protein-like	protein-coding	1.03045615874349	1.15715314342554	0.273282731463192	0.447563171624375	0.419819203336191	0.283107516871041	0.275058255204965	0.450957223924586	-2.78978604473941	0.132642051115196	1
Merged-chr8-40961916-4	chr8	40961803	40962003	+	983.758301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026840, intron 2 of 5)	intron (NM_026840, intron 2 of 5)	35670.0	NM_026840	68797.0	Mm.284246	NM_026840	ENSMUSG00000031595	Pdgfrl	1110039P19Rik|AV013190	platelet-derived growth factor receptor-like	protein-coding	5.35368740955544	6.24397196988645	5.14269076773532	4.53997846793286	5.6861262138783	5.92451866535836	5.14169551831741	5.51969906639603	0.163035874057476	0.641487487701986	0.982599433509505
Merged-chr17-7925906-4	chr17	7925800	7926000	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145968)	promoter-TSS (NM_145968)	-100.0	NM_145968	72536.0	Mm.119680	NM_145968	ENSMUSG00000033450	Tagap	2610315E15Rik|TRD|Tcd-1|Tcd1|Tcd1a|tcs-1|tcs1	T cell activation Rho GTPase activating protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-164520964-4	chr2	164520854	164521054	+	918.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23429.0	NM_133779	78928.0	Mm.28228	NM_133779	ENSMUSG00000017721	Pigt	2510012P17Rik|4930534E15Rik|CGI-06|NDAP|Ndap7	phosphatidylinositol glycan anchor biosynthesis, class T	protein-coding	2.67639566124107	2.34079857853421	2.98969840746944	3.33914788670333	2.86742756072451	2.52181516211622	2.70386752909363	2.73162254055117	-0.349713784397276	0.616796209256067	0.977454074438997
Merged-chr9-99009170-3	chr9	99008998	99009198	+	839.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080776, intron 7 of 7)	ID2|SINE|ID	22725.0	NM_001122851	23873.0	Mm.74605	NM_011810	ENSMUSG00000032463	Faim	-	Fas apoptotic inhibitory molecule	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-105227858-1	chr9	105227758	105227958	+	778.0	f1_c57bl6.idr	intron (NM_172461, intron 13 of 15)	intron (NM_172461, intron 13 of 15)	-82776.0	NM_028562	73532.0	Mm.23516	NM_028562	ENSMUSG00000032566	1700080E11Rik	AI429110|Tseg8	RIKEN cDNA 1700080E11 gene	protein-coding	1.21212124483076	0.725228758939501	0.714177791159232	1.56925397140576	1.22361080081484	0.727705735099643	1.34417714645605	1.17840402770316	0.0857850708454075	0.95430681514765	0.998431161219273
Merged-chr19-34879098-6	chr19	34878969	34879169	+	910.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001114339, exon 1 of 7)	exon (NM_001114339, exon 1 of 7)	386.0	NM_001114339	75735.0	Mm.24742	NM_023792	ENSMUSG00000033610	Pank1	Pank|Pank1b	pantothenate kinase 1	protein-coding	-1.5061220274826	-1.47360709383584	-1.48343987814663	-1.49151681994238	-1.50383953926072	-1.47147628845725	-1.0170701920923	-1.49007105122263	2.15652851593596	0.535359572134045	1
Merged-chr13-24757982-4	chr13	24757887	24758087	+	932.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020567, intron 2 of 6)	intron (NM_020567, intron 2 of 6)	3950.0	NM_020567	57441.0	Mm.12239	NM_020567	ENSMUSG00000006715	Gmnn	AW546347|Gem	geminin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171440478-2	chr1	171440378	171440578	+	646.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172647, intron 1 of 9)	intron (NM_172647, intron 1 of 9)	2917.0	NM_172647	16456.0	Mm.294882	NM_172647	ENSMUSG00000038235	F11r	9130004G24|AA638916|ESTM33|JAM|JAM-1|JAM-A|Jcam|Jcam1|Ly106	F11 receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-76216645-4	chr14	76216537	76216737	+	967.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34825.0	NR_152108	72893.0	Mm.233565	NR_152108		2900040C04Rik	-	RIKEN cDNA 2900040C04 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-10328598-4	chr17	10328565	10328765	+	981.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045461, intron 2 of 2)	intron (NR_045461, intron 2 of 2)	4063.0	NR_045461	76634.0	Mm.491052	NR_045461	ENSMUSG00000099384	1700110C19Rik	-	RIKEN cDNA 1700110C19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-70112518-1	chr15	70112418	70112618	+	649.0	f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	188285.0	NR_045071	100503580.0	Mm.404646	NR_045071	ENSMUSG00000116483	Gm19782	-	predicted gene, 19782	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-41461767-4	chr13	41461671	41461871	+	858.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111324, intron 1 of 7)	intron (NM_001111324, intron 1 of 7)	25589.0	NM_001111324	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-35113665-2	chr6	35113565	35113765	+	661.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164413, intron 1 of 11)	L1M4|LINE|L1	20072.0	NM_001164412	53621.0	Mm.214525	NM_016877	ENSMUSG00000038784	Cnot4	Not4|Not4h|Not4hp	CCR4-NOT transcription complex, subunit 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-193896638-2	chr1	193896538	193896738	+	663.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(A)n|Simple_repeat|Simple_repeat	326121.0	NR_040477	74942.0	Mm.60689	NR_040477	ENSMUSG00000103692	4930503O07Rik	-	RIKEN cDNA 4930503O07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85362675-3	chr12	85362574	85362774	+	847.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026775, intron 1 of 4)	L1MC3|LINE|L1	12043.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28410816-2	chr17	28410716	28410916	+	994.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010220, intron 7 of 10)	intron (NM_010220, intron 7 of 10)	-45600.0	NM_021478	22157.0	Mm.42102	NM_021478	ENSMUSG00000037446	Tulp1	Tulp1l	tubby like protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-64658537-4	chr14	64658448	64658648	+	985.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081177, intron 1 of 39)	intron (NM_001081177, intron 1 of 39)	6017.0	NM_001081177	16554.0	Mm.23611	NM_001081177	ENSMUSG00000060012	Kif13b	5330429L19Rik|6030414C01|AI429803|C130021D12Rik|GAKIN	kinesin family member 13B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36491763-4	chr18	36491641	36491841	+	999.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24064.0	NM_010415	15200.0	Mm.289681	NM_010415	ENSMUSG00000024486	Hbegf	AW047313|Dtr|Dts|Hegfl	heparin-binding EGF-like growth factor	protein-coding	4.20651039180327	4.52637716063203	3.62216726226784	4.07049844405023	3.90277873179032	4.34551578203228	3.55972990343543	3.53687074479091	-0.371993146268606	0.426191335384141	0.902023751857747
Merged-chr4-136053047-2	chr4	136052947	136053147	+	878.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_025919, intron 1 of 5)	CpG	324.0	NM_025919	67025.0	Mm.276856	NM_025919	ENSMUSG00000059291	Rpl11	2010203J19Rik	ribosomal protein L11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-41033498-3	chr12	41033404	41033604	+	758.311096	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053122, intron 2 of 6)	MLT1F|LTR|ERVL-MaLR	9414.0	NM_053122	93757.0	Mm.363813	NM_053122	ENSMUSG00000056899	Immp2l	AI853880|IMP2|Tg(HLA-A/H2-D)2Enge	IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-23733654-2	chr11	23733554	23733754	+	565.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_028956)	TTS (NM_028956)	37316.0	NM_009044	19696.0	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150031526-5	chr4	150031560	150031760	+	699.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22637.0	NM_173371	100198.0	Mm.22183	NM_173371	ENSMUSG00000028980	H6pd	AI785303|G6pd1|Gpd-1|Gpd1	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	protein-coding	1.56521825762402	2.28360928105247	3.08302963198305	1.43964856863088	1.57911568877623	2.30196104716603	3.044357157183	1.44716044868247	-0.0247467679808757	0.980276510701098	0.998431161219273
Merged-chr15-61994181-3	chr15	61994119	61994319	+	874.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8878.0	NM_001177352	17869.0	Mm.2444	NM_010849	ENSMUSG00000022346	Myc	AU016757|Myc2|Niard|Nird|bHLHe39	myelocytomatosis oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-148246969-2	chr3	148246869	148247069	+	620.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	707666.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-119067808-3	chr9	119067708	119067908	+	894.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011700, intron 15 of 18)	intron (NM_011700, intron 15 of 18)	15030.0	NM_001164567	22351.0	Mm.83817	NM_011700	ENSMUSG00000038775	Vill	Villp	villin-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-66873495-4	chr14	66873360	66873560	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4610.0	NM_001034881	432870.0	Mm.425890	NM_001034881	ENSMUSG00000075553	Gm5464	EG432870	predicted gene 5464	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-18906824-2	chr2	18906724	18906924	+	697.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008845, intron 2 of 9)	intron (NM_008845, intron 2 of 9)	91297.0	NM_008845	18718.0	Mm.313977	NM_008845	ENSMUSG00000026737	Pip4k2a	AW742916|Pip5k2a	phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-12014275-4	chr15	12014178	12014378	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER4A|LTR|ERVK	-18271.0	NM_011294	20024.0	Mm.41746	NM_011294	ENSMUSG00000022205	Sub1	AI842364|P15|P9|Pc4|Rpo2tc1	SUB1 homolog (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-77824650-2	chr1	77824550	77824750	+	608.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-309562.0	NM_007936	13838.0	Mm.400747	NM_007936	ENSMUSG00000026235	Epha4	2900005C20Rik|AI385584|Cek8|Hek8|Sek|Sek1|Tyro1|rb	Eph receptor A4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-72603038-4	chr14	72602909	72603109	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207636, intron 3 of 25)	intron (NM_207636, intron 3 of 25)	106994.0	NM_207636	319448.0	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-31950985-4	chr19	31950887	31951087	+	976.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	82226.0	NM_001081074	69865.0	Mm.87538	NM_001081074	ENSMUSG00000052595	A1cf	1810073H04Rik|ACF64|ACF65|ASP|Acf|MCM|MerCreMer|Tg(Myh6-cre/Esr1*)1Jmk|mer	APOBEC1 complementation factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-71526883-3	chr2	71526770	71526970	+	750.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_039557, intron 2 of 3).2	intron (NR_039557, intron 2 of 3).2	-2575.0	NM_010053	13390.0	Mm.475101	NM_010053	ENSMUSG00000041911	Dlx1	Dlx|Dlx-1	distal-less homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-137414233-2	chr7	137414133	137414333	+	708.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB3|LINE|L1	-3477.0	NM_029886	77252.0	Mm.29184	NM_029886	ENSMUSG00000040139	9430038I01Rik	-	RIKEN cDNA 9430038I01 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-114793993-1	chr4	114793893	114794093	+	795.0	f1_c57bl6.idr	Intergenic	Intergenic	-27727.0	NR_033617	433746.0	Mm.388908	NR_033617	ENSMUSG00000055198	Gm12830	-	predicted gene 12830	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26561467-4	chr17	26561351	26561551	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026170)	promoter-TSS (NM_026170)	-61.0	NM_026170	67458.0	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	4.94555512238768	4.31757324067586	4.9692954409753	4.84529286787037	5.06440427259942	4.27806814358554	5.04042675295578	4.79088704357396	0.0439076273366361	0.90144803283137	0.998431161219273
Merged-chr13-98960975-2	chr13	98960882	98961082	+	923.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23583.0	NM_027064	69382.0	Mm.45466	NM_027064	ENSMUSG00000045022	1700024P04Rik	H2bl1|Subh2bv	RIKEN cDNA 1700024P04 gene	protein-coding	1.82031714544904	1.77498487619821	1.85388883880008	1.9183762429808	2.25341675781665	2.06060640607862	1.15573652662547	1.3509051306628	-0.104737546189077	0.92244706234733	0.998431161219273
Merged-chr18-74208334-4	chr18	74208222	74208422	+	862.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164355)	promoter-TSS (NM_001164355)	-504.0	NM_025581	66468.0	Mm.283406	NM_025581	ENSMUSG00000036223	Ska1	2810433K01Rik|AV117428	spindle and kinetochore associated complex subunit 1	protein-coding	2.27574231512081	3.33615431690957	3.7572601955129	2.28289703603697	2.41022150125344	1.66921431533543	2.0515730865237	1.27006108511736	-2.2835271261466	0.00987515243517395	0.1081040866033
Merged-chr13-67278531-3	chr13	67278426	67278626	+	900.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033540)	promoter-TSS (NR_033540)	-68.0	NR_033540	100038627.0	Mm.387089	NR_033540	ENSMUSG00000114442	F630042J09Rik	-	RIKEN cDNA F630042J09 gene	ncRNA	2.11468627169198	3.27751470319582	3.2589904859664	1.52554826285189	3.10344050824618	3.49568711013241	4.50272350749993	3.76029005256176	1.69520327099918	0.0163998315063342	0.154662920913789
Merged-chr1-151074596-4	chr1	151074474	151074674	+	893.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63460.0	NR_038011	402734.0	Mm.337666	NR_038011		C730036E19Rik	lncLSTR	RIKEN cDNA C730036E19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-21112018-4	chr19	21111784	21111984	+	934.2666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7174.0	NR_126458	75354.0	Mm.243873	NR_126458		4930554I06Rik	-	RIKEN cDNA 4930554I06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-77483880-4	chr8	77483762	77483962	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030113, intron 1 of 22)	intron (NM_030113, intron 1 of 22)	-33194.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-36051741-1	chr12	36051641	36051841	+	656.0	f0_balb.idr	Intergenic	Intergenic	-9263.0	NM_025359	66109.0	Mm.254663	NM_025359	ENSMUSG00000020577	Tspan13	1100001I23Rik|NET-6|Tm4sf13	tetraspanin 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46502947-4	chr19	46502838	46503038	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_053100, exon 1 of 6)	exon (NM_053100, exon 1 of 6)	1290.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-57205788-2	chr1	57205688	57205888	+	932.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_037990, intron 5 of 6)	intron (NR_037990, intron 5 of 6)	9208.0	NR_037990	407809.0	Mm.134505	NR_037990	ENSMUSG00000101429	BC055402	-	cDNA sequence BC055402	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-64172907-4	chr9	64172774	64172974	+	951.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026507)	promoter-TSS (NM_026507)	57.0	NM_026507	68014.0	Mm.335237	NM_026507	ENSMUSG00000032400	Zwilch	2310031L18Rik	zwilch kinetochore protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180402760-4	chr1	180402659	180402859	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081175, intron 2 of 7)	intron (NM_001081175, intron 2 of 7)	-72210.0	NR_003623	277333.0	Mm.389223	NM_199472		Gm5069	EG277333	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-62186632-4	chr18	62186516	62186716	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	6516.0	NM_001013754	225609.0	Mm.296917	NM_001013754	ENSMUSG00000054589	Gm9949	EG225609	predicted gene 9949	protein-coding	3.02076992184732	3.49389481358425	3.82810059012052	3.28149292881521	3.22133712441607	3.42253132055365	4.27790635929085	3.10467346801487	0.24584931939422	0.667689253272251	0.993009130744625
Merged-chr7-43782210-2	chr7	43782110	43782310	+	746.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133712, intron 2 of 5)	intron (NM_133712, intron 2 of 5)	1156.0	NM_133712	69540.0	Mm.46421	NM_133712	ENSMUSG00000030693	Klk10	2300002A13Rik|NES1|PRSSL1	kallikrein related-peptidase 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94526382-2	chr10	94526282	94526482	+	556.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172051, intron 1 of 3)	intron (NM_172051, intron 1 of 3)	11525.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46889914-3	chr8	46889795	46889995	+	934.866699	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-96992.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-50058319-3	chr5	50058230	50058430	+	878.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133911, intron 1 of 18)	CpG	666.0	NM_133911	70693.0	Mm.272974	NM_133911	ENSMUSG00000029090	Adgra3	3830613O22Rik|AU044632|Gpr125|Tem5-like	adhesion G protein-coupled receptor A3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-53157465-3	chr15	53157368	53157568	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	188715.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33756188-4	chr16	33756091	33756291	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175256, intron 12 of 14)	intron (NM_175256, intron 12 of 14)	-37846.0	NM_010739	17063.0	Mm.3177	NM_010739	ENSMUSG00000022824	Muc13	114/A10|14/A10|AI159736|Lrrp|Ly64|NJ-1	mucin 13, epithelial transmembrane	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-54438963-4	chr1	54438860	54439060	+	983.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033194)	promoter-TSS (NM_001033194)	66.0	NM_001033194	98488.0	Mm.25856	NM_001033194	ENSMUSG00000041303	Gtf3c3	TF3C-gamma|TFIIIC102	general transcription factor IIIC, polypeptide 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69911020-1	chr11	69910920	69911120	+	543.0	f1_c57bl6.idr	intron (NM_001013414, intron 23 of 28)	intron (NM_001013414, intron 23 of 28)	-3014.0	NM_001357906	56310.0	Mm.477738	NM_019726	ENSMUSG00000023170	Gps2	AI505953|GPS-2	G protein pathway suppressor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-34861597-2	chr6	34861497	34861697	+	626.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4b|LINE|L1	-1549.0	NM_197986	68487.0	Mm.248440	NM_197986	ENSMUSG00000057137	Tmem140	1110007F12Rik	transmembrane protein 140	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31392983-4	chr14	31392882	31393082	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347585, intron 2 of 7)	intron (NM_001347585, intron 2 of 7)	24695.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-172402936-2	chr2	172402836	172403036	+	574.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080820, intron 1 of 6)	intron (NM_001080820, intron 1 of 6)	9142.0	NM_001276423	320664.0	Mm.210195	NM_001033538	ENSMUSG00000074570	Cass4	F730031O20Rik	Cas scaffolding protein family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-75241733-2	chr1	75241633	75241833	+	575.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159883, intron 8 of 8)	CT-rich|Low_complexity|Low_complexity	5031.0	NM_001159885	56812.0	Mm.489660	NM_020266	ENSMUSG00000026203	Dnajb2	2700059H22Rik|Dnajb10|Hsj1|mDj8	DnaJ heat shock protein family (Hsp40) member B2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-3699484-4	chr16	3699386	3699586	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18638.0	NM_001161790	54483.0	Mm.143718	NM_019453	ENSMUSG00000022534	Mefv	FMF|TRIM20|pyrin	Mediterranean fever	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81016383-3	chr15	81016252	81016452	+	735.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_153049, exon 10 of 13)	exon (NM_153049, exon 10 of 13)	38587.0	NM_134091	105835.0	Mm.274943	NM_134091	ENSMUSG00000042303	Sgsm3	1810012I01Rik|AI428557|BB175482|Cip85|R75178|RUSC3|Rutbc3	small G protein signaling modulator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-127526893-3	chr3	127526817	127527017	+	784.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18172.0	NR_146435	110008574.0		NR_146435		LOC110008574	-	miR-302 host gene	ncRNA	1.68678580501557	3.39311741571876	2.21196058499333	3.1222230057961	1.48900984764412	2.94312035718819	1.33494540397541	2.92053221358256	-0.722217359555753	0.446122757503691	0.913719110826868
Merged-chr13-32866633-3	chr13	32866500	32866700	+	608.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15415.0	NM_025429	66222.0	Mm.20144	NM_025429	ENSMUSG00000044734	Serpinb1a	1190005M04Rik|AI325983|EI|EIA|ELANH2|LEI|M/NEI|MNEI|PI2	serine (or cysteine) peptidase inhibitor, clade B, member 1a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-28450553-2	chr6	28450453	28450653	+	655.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1213.0	NM_001159925	18506.0	Mm.8026	NM_011038	ENSMUSG00000029706	Pax4	Pax-4	paired box 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-96005852-2	chr11	96005752	96005952	+	921.7999880000001	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009951)	promoter-TSS (NM_009951)	92.0	NM_009951	140486.0	Mm.294769	NM_009951	ENSMUSG00000013415	Igf2bp1	AL024068|AW549074|CRD-BP|Crdbp|D030026A21Rik|D11Moh40e|D11Moh45|IMP-1|IMP1|Neilsen|ZBP-1|Zbp1|mir-3063	insulin-like growth factor 2 mRNA binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118419063-4	chr11	118418935	118419135	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001267592)	promoter-TSS (NM_001267592)	83.0	NM_001025617	76025.0	Mm.177551	NM_029502	ENSMUSG00000025575	Cant1	5830420C20Rik|Apy1h|D11Bwg0554e|Entpd8|SCAN-1|Shapy	calcium activated nucleotidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-43560899-2	chr7	43560799	43560999	+	712.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1471.0	NM_001008549	210104.0	Mm.333821	NM_001008549	ENSMUSG00000056592	Zfp658	-	zinc finger protein 658	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-93031801-4	chr16	93031676	93031876	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-205702.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-170608842-3	chr1	170608762	170608962	+	912.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19013.0	NM_001109985	70729.0	Mm.409310	NM_027528	ENSMUSG00000038473	Nos1ap	6330408P19Rik|Capon	nitric oxide synthase 1 (neuronal) adaptor protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5781168-2	chr19	5781068	5781268	+	735.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-9749.0	NR_155264	78891.0	Mm.276063	NM_023912	ENSMUSG00000024941	Scyl1	2810011O19Rik|C85140|Ntkl|mdf|mfd|p105	SCY1-like 1 (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-88288950-4	chr8	88288860	88289060	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001037723)	promoter-TSS (NM_001037723)	-106.0	NM_001037723	11513.0	Mm.288206	NM_007406	ENSMUSG00000031659	Adcy7	AA407758	adenylate cyclase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-70183396-3	chr10	70183288	70183488	+	677.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111121, intron 7 of 8)	intron (NM_001111121, intron 7 of 8)	-21276.0	NM_001304739	69563.0	Mm.64672	NM_001304739	ENSMUSG00000019933	Mrln	2310015B20Rik|Linc-RAM|Mln	myoregulin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-47035158-4	chr7	47035065	47035265	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15475.0	NM_026436	67893.0	Mm.27338	NM_026436	ENSMUSG00000010307	Tmem86a	1810054O13Rik|AI414959|AW742698	transmembrane protein 86A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-99219332-3	chr5	99219282	99219482	+	727.200012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181318, intron 13 of 13)	intron (NM_181318, intron 13 of 13)	33545.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150388769-3	chr4	150388677	150388877	+	852.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 1 of 22)	intron (NM_001085492, intron 1 of 22)	106861.0	NM_001085492	68703.0	Mm.291274	NM_001085492	ENSMUSG00000039852	Rere	1110033A15Rik|AI414665|ARG|ARP|ATN1L|AW742570|Atr2|DNB1|eye<m03Jus>|eyes3|mKIAA0458	arginine glutamic acid dipeptide (RE) repeats	protein-coding	2.48546802313258	1.27276970430348	1.71875111525066	2.8431582593045	1.76199074976846	1.28028009656257	2.64169094174075	2.71761034025547	0.0154092015620815	0.988261025178034	0.998431161219273
Merged-chr16-5011414-4	chr16	5011315	5011515	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133185, intron 5 of 10)	intron (NM_133185, intron 5 of 10)	2138.0	NM_133185	66049.0	Mm.27792	NM_133185	ENSMUSG00000022540	Rogdi	0610011C19Rik|AU020118|C76152|Lzf	rogdi homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3699482-3	chr4	3699391	3699591	+	783.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 1 of 12)	intron (NM_001111096, intron 1 of 12)	-15473.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-79993584-2	chr10	79993484	79993684	+	711.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007725, intron 6 of 6)	intron (NM_007725, intron 6 of 6)	-4024.0	NM_001347081	27403.0	Mm.103351	NM_013850	ENSMUSG00000035722	Abca7	ABCX|Abc51	ATP-binding cassette, sub-family A (ABC1), member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-170176204-2	chr1	170176104	170176304	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1240.0	NM_001305045	107652.0	Mm.27969	NM_133806	ENSMUSG00000026670	Uap1	AA420407|AA437972|AGX-1|AGX-2|AGX1|AgX|ESTM38|SPAG2	UDP-N-acetylglucosamine pyrophosphorylase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-75181080-2	chr17	75180980	75181180	+	923.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019919, intron 5 of 33)	intron (NM_019919, intron 5 of 33)	2299.0	NM_001331235	268977.0	Mm.269747	NM_019919	ENSMUSG00000001870	Ltbp1	9430031G15Rik|9830146M04|Ltbp-1|Ltbp1L|TGF-beta1-BP-1|Tgfb|b2b1000Clo	latent transforming growth factor beta binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-23149933-4	chr19	23149821	23150021	+	882.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_035423)	TTS (NR_035423)	490.0	NR_035423	100316672.0		NR_035423	ENSMUSG00000080626	Mir1192	Mirn1192|mmu-mir-1192	microRNA 1192	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-80963280-2	chr8	80963162	80963362	+	602.0	f0_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51644.0	NM_027554	74841.0	Mm.246018	NM_027554	ENSMUSG00000038250	Usp38	4631402N15Rik|4833420O05Rik|AA536967|AU044701|AW544820|mKIAA1891	ubiquitin specific peptidase 38	protein-coding	2.33320336918774	2.4925056833962	1.4611390033267	2.56697748724021	2.86196483952321	2.2034395805125	3.09675891943416	2.76930098089373	1.02198427672845	0.212981337919091	0.702662720170463
Merged-chr4-46451576-4	chr4	46451464	46451664	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130889, intron 1 of 6)	CpG	638.0	NM_130889	67628.0	Mm.263913	NM_130889	ENSMUSG00000028333	Anp32b	2410015B15Rik|PAL31|PHAPI2a|Ssp29	acidic (leucine-rich) nuclear phosphoprotein 32 family, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-61418975-2	chr10	61418875	61419075	+	547.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013611, intron 1 of 2)	intron (NM_013611, intron 1 of 2)	1003.0	NM_013611	18119.0	Mm.57195	NM_013611	ENSMUSG00000037171	Nodal	Tg.413d	nodal	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-34840690-2	chr18	34840590	34840790	+	812.666687	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001204914, exon 1 of 8)	5' UTR (NM_001204914, exon 1 of 8)	101.0	NM_144865	225362.0	Mm.293588	NM_144865	ENSMUSG00000038555	Reep2	-	receptor accessory protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-62231267-4	chr10	62231170	62231370	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_197996)	promoter-TSS (NM_197996)	-52.0	NM_197996	70423.0	Mm.416781	NM_197996	ENSMUSG00000037031	Tspan15	1110036D12Rik|2700063A19Rik|AW048364|Tm4sf15	tetraspanin 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-112400298-2	chr7	112400198	112400398	+	931.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027587, intron 7 of 9)	intron (NM_027587, intron 7 of 9)	-27408.0	NM_020606	57342.0	Mm.143763	NM_020606	ENSMUSG00000030770	Parva	2010012A22Rik|5430400F08Rik|AI225929|AU042898|Actp|CH-ILKBP|Parvin	parvin, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28144158-2	chr17	28144058	28144258	+	593.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001004366, intron 1 of 21)	intron (NM_001004366, intron 1 of 21)	1632.0	NM_001004366	268935.0	Mm.258491	NM_001004366	ENSMUSG00000038677	Scube3	CEGF3|D030038I21Rik	signal peptide, CUB domain, EGF-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-35299996-2	chr11	35299896	35300096	+	598.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011412, intron 4 of 35)	intron (NM_011412, intron 4 of 35)	178540.0	NM_011412	20564.0	Mm.478604	NM_011412	ENSMUSG00000056427	Slit3	Slil2|Slit1|b2b2362.1Clo	slit guidance ligand 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-86446861-1	chr17	86446761	86446961	+	725.0	f1_balb.idr	intron (NM_011104, intron 2 of 14)	intron (NM_011104, intron 2 of 14)	-159683.0	NR_045435	72104.0	Mm.443401	NR_045435	ENSMUSG00000100738	2010106C02Rik	-	RIKEN cDNA 2010106C02 gene	ncRNA	2.58235636641053	1.8413522651644	1.95550302083117	2.56726260709164	2.07866006537252	1.37205627298374	2.74520041205354	2.18317648754725	-0.218758692124651	0.815372908560114	0.998431161219273
Merged-chr19-47228846-4	chr19	47228786	47228986	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163480)	promoter-TSS (NM_001163480)	43.0	NM_001163480	18011.0	Mm.313651	NM_021360	ENSMUSG00000006435	Neurl1a	2410129E16Rik|AI450910|AI481072|Neu1|Neur1|Neurl|Neurl1|Nlz|Rnf67	neuralized E3 ubiquitin protein ligase 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-75210345-1	chr16	75210245	75210445	+	553.0	f1_balb.idr	Intergenic	L1_Mur2|LINE|L1	-117575.0	NM_001358492	268902.0	Mm.171736	NM_175549	ENSMUSG00000052516	Robo2	2600013A04Rik|9430089E08Rik|BB097918|D230004I22Rik|mKIAA1568	roundabout guidance receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21959801-2	chr9	21959701	21959901	+	686.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_010149, exon 7 of 8)	exon (NM_010149, exon 7 of 8)	3775.0	NM_010149	13857.0	Mm.2653	NM_010149	ENSMUSG00000006235	Epor	-	erythropoietin receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-143437811-2	chr7	143437711	143437911	+	601.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	23239.0	NM_009876	12577.0	Mm.168789	NM_009876	ENSMUSG00000037664	Cdkn1c	AL024410|CDKI|Kip2|p57(kip2)|p57Kip2	cyclin-dependent kinase inhibitor 1C (P57)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118681865-3	chr9	118681774	118681974	+	827.555542	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 13 of 27)	intron (NM_133721, intron 13 of 27)	-29818.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	-1.84354474832578	-1.81325489144778	-1.53416061964661	-1.82993901100912	-1.8414184563789	-1.81126990231468	-1.82034119297928	-1.82859217979378	-1.52252619601533	0.665276690233728	1
Merged-chr5-99236437-2	chr5	99236335	99236535	+	854.7999880000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_145839, intron 4 of 13)	intron (NM_145839, intron 4 of 13)	16492.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-81538356-4	chr17	81538263	81538463	+	968.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 2 of 8)	ORR1E|LTR|ERVL-MaLR	200024.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-37589751-4	chr6	37589658	37589858	+	950.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	59585.0	NM_145364	208665.0	Mm.262635	NM_145364	ENSMUSG00000038641	Akr1d1	-	aldo-keto reductase family 1, member D1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-65536469-4	chr1	65536372	65536572	+	867.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	225215.0	NM_139270	213527.0	Mm.294225	NM_139270	ENSMUSG00000025946	Pth2r	Pthr2	parathyroid hormone 2 receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27744543-3	chr2	27744370	27744570	+	904.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290481, intron 4 of 9)	intron (NM_001290481, intron 4 of 9)	33887.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-53398413-4	chr10	53398372	53398572	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11410.0	NR_152767	102640074.0	Mm.412957	NR_152767		Gm36229	-	predicted gene, 36229	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-100602413-4	chr13	100602316	100602516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038602, intron 3 of 6)	intron (NM_001038602, intron 3 of 6)	14528.0	NM_178410	218518.0	Mm.25300	NM_178410	ENSMUSG00000021636	Marveld2	BC003296|MARVD2|Mrvldc2|Tric|Trica|Tricb|Tricc	MARVEL (membrane-associating) domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-164059529-3	chr1	164059427	164059627	+	723.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-2549.0	NM_001164059	20343.0	Mm.1461	NM_011346	ENSMUSG00000026581	Sell	AI528707|CD62L|L-selectin|LECAM-1|Lnhr|Ly-22|Ly-m22|Lyam-1|Lyam1	selectin, lymphocyte	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-146807244-1	chr5	146807144	146807344	+	683.0	f1_balb.idr	Intergenic	L1MB4|LINE|L1	-12288.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	2.88789101288979	3.59750086805565	3.23459879109637	2.5895943653163	3.1637982397522	3.76553841155537	1.64154031360127	3.77203823673816	0.307852658083998	0.669504181716341	0.993577811443337
Merged-chr7-51861289-2	chr7	51861189	51861389	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001330608)	promoter-TSS (NM_001330608)	-726.0	NM_001330608	14453.0	Mm.207360	NM_008087	ENSMUSG00000030498	Gas2	Gas-2	growth arrest specific 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-155019456-3	chr2	155019373	155019573	+	890.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015770, intron 1 of 3)	ERVB4_1-I_MM-int|LTR|ERVK	5903.0	NM_015770	50518.0	Mm.315593	NM_015770	ENSMUSG00000027596	a	A<y>|ASIP|ASP|As	nonagouti	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97488610-3	chr6	97488520	97488720	+	871.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346637)	promoter-TSS (NM_001346637)	-800.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	3.24173515637047	2.8830158173482	3.90103251410382	2.43400897544937	2.58333528987022	2.76921220255315	3.13179599375804	3.125284751095	-0.538257403393039	0.421635302593385	0.900322118218157
Merged-chr2-71366774-2	chr2	71366674	71366874	+	835.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172436, intron 1 of 17)	intron (NM_172436, intron 1 of 17)	780.0	NM_172436	78830.0	Mm.30928	NM_172436	ENSMUSG00000027010	Slc25a12	2610002D09Rik|AI839531|B230107K20Rik|BB129864	solute carrier family 25 (mitochondrial carrier, Aralar), member 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-60786513-2	chr2	60786413	60786613	+	853.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001141932, intron 4 of 14)	intron (NM_001141932, intron 4 of 14)	-63910.0	NM_001159564	16420.0	Mm.98193	NM_021359	ENSMUSG00000026971	Itgb6	2210409C20Rik|4831415H04Rik	integrin beta 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-43790814-4	chr13	43790710	43790910	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009856, intron 2 of 4)	intron (NM_009856, intron 2 of 4)	5698.0	NM_001289915	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-45016768-4	chr19	45016550	45016750	+	919.380554	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145503, intron 1 of 4)	intron (NM_145503, intron 1 of 4)	1440.0	NM_001130525	226154.0	Mm.28204	NM_145503	ENSMUSG00000035342	Lzts2	BC014695|LAPSER1|mKIAA1813	leucine zipper, putative tumor suppressor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-106785938-2	chr3	106785838	106786038	+	740.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007651, intron 1 of 7)	Lx9|LINE|L1	4211.0	NM_007651	12508.0	Mm.316861	NM_007651	ENSMUSG00000040747	Cd53	AI323659|Ox-44|Tspan25	CD53 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-83817852-4	chr3	83817734	83817934	+	897.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23774.0	NM_011905	24088.0	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-46813384-3	chr11	46813275	46813475	+	761.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178759, intron 1 of 8)	B3|SINE|B2	2576.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-100735034-2	chr12	100734923	100735123	+	673.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-9903.0	NM_153587	73086.0	Mm.220417	NM_153587	ENSMUSG00000021180	Rps6ka5	3110005L17Rik|6330404E13Rik|AI854034|MSK1|MSPK1|RLPK|RLSK|S6K-alpha-5	ribosomal protein S6 kinase, polypeptide 5	protein-coding	0.601759584014588	0.6651517287573	0.645226099674095	1.38200511922477	1.0119425736296	0.66954263080694	2.29173937154105	1.91649351570272	2.66281534131174	0.0779713406299729	0.424969781137984
Merged-chr15-88716547-2	chr15	88716447	88716647	+	832.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033274, intron 3 of 12)	intron (NM_001033274, intron 3 of 12)	17672.0	NM_001033274	223770.0	Mm.254438	NM_001033274	ENSMUSG00000022387	Brd1	1110059H06Rik|AI316859|mKIAA4191	bromodomain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-76370441-4	chr12	76370338	76370538	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001172104)	promoter-TSS (NM_001172104)	172.0	NM_178744	268564.0	Mm.77065	NM_178744	ENSMUSG00000033454	Zbtb1	9430077A12|AI256369|Bsg2|C430003J21Rik	zinc finger and BTB domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-87423732-2	chr11	87423632	87423832	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_031386, intron 1 of 30)	intron (NM_031386, intron 1 of 30)	-3859.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-34133314-4	chr7	34133214	34133414	+	983.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207212)	promoter-TSS (NM_207212)	-46.0	NM_207212	101543.0	Mm.422738	NM_207212	ENSMUSG00000036459	Wtip	-	WT1-interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28688514-2	chr17	28688414	28688614	+	702.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290320, intron 1 of 19)	ID_B1|SINE|B4	1473.0	NM_001290320	224661.0		NM_146076	ENSMUSG00000036196	Slc26a8	-	solute carrier family 26, member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-98153597-2	chr3	98153497	98153697	+	545.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-7037.0	NM_027665	71078.0	Mm.50711	NM_027665	ENSMUSG00000043468	Adam30	4933424D07Rik|svph4	a disintegrin and metallopeptidase domain 30	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118116250-2	chr11	118116150	118116350	+	790.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001167746, intron 13 of 80)	ORR1G|LTR|ERVL-MaLR	12969.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127274524-4	chr7	127274420	127274620	+	877.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009266)	promoter-TSS (NM_009266)	-461.0	NM_009266	20768.0	Mm.20294	NM_009266	ENSMUSG00000049091	Sephs2	Sps2|Ysg3	selenophosphate synthetase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111160170-4	chr12	111160055	111160255	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_130987, exon 4 of 4)	non-coding (NR_130987, exon 4 of 4)	-6215.0	NM_001286122	22031.0	Mm.27431	NM_011632	ENSMUSG00000021277	Traf3	AI528849|CAP-1|CD40bp|CRAF1|LAP1|T-BAM|amn	TNF receptor-associated factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-125503600-4	chr7	125503507	125503707	+	945.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12065.0	NM_026330	67711.0	Mm.4467	NM_026330	ENSMUSG00000030750	Nsmce1	2510027N19Rik	NSE1 homolog, SMC5-SMC6 complex component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-41582539-4	chr3	41582445	41582645	+	902.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001130184, intron 2 of 10)	intron (NM_001130184, intron 2 of 10)	17665.0	NM_001130186	269424.0	Mm.286285	NM_172303	ENSMUSG00000025764	Jade1	AU041499|D530048A03Rik|Phf17|mKIAA1807	jade family PHD finger 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-47688674-4	chr8	47688578	47688778	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-13519.0	NM_023503	69260.0	Mm.430733	NM_023503	ENSMUSG00000063049	Ing2	2810011M06Rik|Ing1l|Ing2b|P33ING2	inhibitor of growth family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-121475654-7	chr10	121475485	121475685	+	920.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138956, intron 1 of 4)	CpG	665.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26915209-1	chr17	26915109	26915309	+	571.0	f1_balb.idr	Intergenic	RLTR42-int|LTR|ERVK	-1882.0	NM_053173	16580.0	Mm.491138	NM_016761	ENSMUSG00000024301	Kifc5b	Hset|KNSL2|Kifc5a	kinesin family member C5B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80125537-2	chr10	80125437	80125637	+	579.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_011492, exon 3 of 10)	exon (NM_011492, exon 3 of 10)	9734.0	NM_001301854	20869.0	Mm.44231	NM_011492	ENSMUSG00000003068	Stk11	AA408040|Lkb1|Par-4|R75140	serine/threonine kinase 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-133547050-4	chr3	133546933	133547133	+	971.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2643.0	NM_001346736	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-16964518-2	chr6	16964418	16964618	+	624.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66077.0	NM_031198	21426.0	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-85524394-4	chr11	85524332	85524532	+	813.841675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138681, intron 16 of 25)	intron (NM_138681, intron 16 of 25)	171268.0	NM_001166643	192197.0	Mm.209989	NM_138681	ENSMUSG00000059439	Bcas3	1500019F07Rik|2610028P08Rik|AU021018|BC028339|K20D4|rudhira	breast carcinoma amplified sequence 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-34550448-4	chr4	34550330	34550530	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001007589)	promoter-TSS (NM_001007589)	-185.0	NM_001007589	433693.0	Mm.389532	NM_026019	ENSMUSG00000028291	Akirin2	2700059D21Rik|AA114675|AA522011|AU019887|Akirin-2	akirin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-20551815-2	chr3	20551715	20551915	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-184638.0	NM_175086	11608.0	Mm.134863	NM_175086	ENSMUSG00000054988	Agtr1b	AT1B|AT2R1B|Agtr-1b|Angtr-1b	angiotensin II receptor, type 1b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4738904-2	chr16	4738804	4739004	+	839.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001136066, intron 1 of 5)	intron (NM_001136066, intron 1 of 5)	-2709.0	NM_010443	15369.0	Mm.272866	NM_010443	ENSMUSG00000004070	Hmox2	HO-2|HO2	heme oxygenase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-25101246-2	chr8	25101146	25101346	+	922.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_155282)	promoter-TSS (NR_155282)	565.0	NM_031257	83436.0	Mm.261122	NM_031257	ENSMUSG00000031557	Plekha2	6430512N22Rik|AI851530|AU041791|TAPP2|W91773	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81393663-4	chr10	81393568	81393768	+	858.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001099917, intron 1 of 3)	intron (NM_001099917, intron 1 of 3)	604.0	NM_001099917	72273.0	Mm.253147	NM_001099917	ENSMUSG00000078439	Smim24	2210404O07Rik	small integral membrane protein 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-44997008-2	chr13	44996908	44997108	+	854.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_025772, intron 1 of 9)	intron (NM_025772, intron 1 of 9)	5088.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-22092778-4	chr9	22092669	22092869	+	861.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6484.0	NM_009922	12797.0	Mm.4356	NM_009922	ENSMUSG00000001349	Cnn1	CN|CnnI	calponin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-117073474-2	chr2	117073374	117073574	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47597.0	NM_001277256	114715.0	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-143579954-4	chr5	143579870	143580070	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31264.0	NM_026050	67238.0	Mm.383219	NM_026050	ENSMUSG00000083012	Fam220a	1500026F15Rik|2810453I06Rik|AW047776|Acpin1|Sipar	family with sequence similarity 220, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-103007141-4	chr11	103007036	103007236	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026551, intron 1 of 4)	MIRb|SINE|MIR	-7215.0	NR_105896	102466988.0		NR_105896	ENSMUSG00000098613	Mir6931	Gm27303|mmu-mir-6931	microRNA 6931	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-141094421-4	chr5	141094311	141094511	+	825.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-93815.0	NM_175362	108723.0	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-84836224-4	chr16	84836125	84836325	+	934.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016755)	promoter-TSS (NM_016755)	-600.0	NM_001302213	11957.0	Mm.353	NM_016755	ENSMUSG00000022890	Atp5j	CF6	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76722280-3	chr15	76722187	76722387	+	924.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198119)	promoter-TSS (NM_198119)	-114.0	NM_198119	378937.0	Mm.289666	NM_198119	ENSMUSG00000033707	Lrrc24	6430402H13Rik	leucine rich repeat containing 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-34661482-1	chr5	34661382	34661582	+	599.0	f1_balb.idr	intron (NM_001080743, intron 1 of 5)	B1_Mus2|SINE|Alu	1103.0	NM_019497	14772.0	Mm.117076	NM_019497	ENSMUSG00000052783	Grk4	A830025H08Rik|GRK|Gprk2l|Gprk4	G protein-coupled receptor kinase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-110623214-4	chr9	110623107	110623307	+	815.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_026012, exon 2 of 5)	5' UTR (NM_026012, exon 2 of 5)	1186.0	NM_026012	67169.0	Mm.46680	NM_026012	ENSMUSG00000032491	Nradd	2610311B09Rik|BB104149|NRDD|NRH2|PLAIDD	neurotrophin receptor associated death domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-11692670-2	chr11	11692570	11692770	+	710.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301863, intron 1 of 7)	intron (NM_001301863, intron 1 of 7)	2493.0	NM_001301863	22778.0	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-50998574-1	chr14	50998474	50998674	+	854.0	f0_c57.idr	Intergenic	Intergenic	-9177.0	NM_001162863	75019.0	Mm.318775	NM_029145	ENSMUSG00000021872	Rnase10	4930474F22Rik|Rah1	ribonuclease, RNase A family, 10 (non-active)	protein-coding	-1.33529739681439	-1.30591854857254	-1.3158428643115	-1.1678401991129	-0.950618823128122	-1.30376790795164	-1.31359621676301	-1.3225357656552	1.06732360251078	0.756380064897408	1
Merged-chr16-55823272-2	chr16	55823172	55823372	+	860.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_030612, intron 2 of 13)	intron (NM_030612, intron 2 of 13)	-1134.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-118691932-6	chr14	118691793	118691993	+	841.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163676, intron 1 of 29)	intron (NM_001163676, intron 1 of 29)	14326.0	NM_001163676	239273.0	Mm.40537	NM_001033336	ENSMUSG00000032849	Abcc4	ABCC4-N1|D630049P08Rik|MOATB|MRP4	ATP-binding cassette, sub-family C (CFTR/MRP), member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-47771305-2	chr6	47771171	47771371	+	864.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18346.0	NR_002841	19799.0		NR_002841		Rn4.5s	-	4.5S RNA	rRNA	1.36625120938429	1.47402831302588	0.684850160806017	1.2599732480461	1.08840603137366	0.69829976719125	0.6872845026925	1.15049260988947	-1.38965178672967	0.357540246106912	0.854195116047536
Merged-chr11-20712384-4	chr11	20712273	20712473	+	962.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181411, intron 2 of 8)	intron (NM_181411, intron 2 of 8)	29183.0	NM_001290545	216549.0	Mm.356580	NM_181411	ENSMUSG00000049659	Aftph	-	aftiphilin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-87356795-4	chr3	87356684	87356884	+	948.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1097.0	NM_009690	11801.0	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	5.26070206598438	4.9472735488416	5.71518669887833	5.47035511653498	4.07570269496239	4.682112332492	4.29269719170025	5.10459953825186	-0.935560497346406	0.00790711216813009	0.0922257276019684
Merged-chr12-48134110-2	chr12	48134010	48134210	+	610.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2B2|LINE|L1	-1248773.0	NM_001160112	15228.0	Mm.4704	NM_008241	ENSMUSG00000020950	Foxg1	2900064B05Rik|BF-1|Bf1|Hfh9|Hfhbf1	forkhead box G1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-29970361-1	chr17	29970261	29970461	+	759.0	f1_balb.idr	Intergenic	Intergenic	-34678.0	NM_148926	21769.0	Mm.220972	NM_148926	ENSMUSG00000044477	Zfand3	AW539211|TEG-27|Tex27	zinc finger, AN1-type domain 3	protein-coding	-0.366626417179347	-0.352692175281507	-0.357249875608969	0.28625245588711	-0.365754612910758	-0.35166575818681	-0.356244039914784	0.294119739107777	0.0282770312316891	0.991511101680898	1
Merged-chr13-55622972-4	chr13	55622883	55623083	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007596)	promoter-TSS (NM_007596)	-22.0	NM_007596	12328.0	Mm.2313	NM_007596	ENSMUSG00000021501	Caml	AI385748|Camlg	calcium modulating ligand	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-21784590-4	chr5	21784483	21784683	+	949.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011188)	promoter-TSS (NM_011188)	582.0	NM_009584	22791.0	Mm.266312	NM_009584	ENSMUSG00000029014	Dnajc2	AU020218|MIDA1|Zrf1|Zrf2	DnaJ heat shock protein family (Hsp40) member C2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-30499208-1	chr17	30499108	30499308	+	560.0	f1_balb.idr	intron (NM_172618, intron 6 of 11)	intron (NM_172618, intron 6 of 11)	77079.0	NM_172618	224671.0	Mm.41220	NM_027060	ENSMUSG00000062202	Btbd9	1700023F20Rik|4930402L05|AI464421	BTB (POZ) domain containing 9	protein-coding	-0.980824451337283	-0.964679406319448	-0.975492540855191	-0.97750194321271	-0.51120724122278	-0.96216060155969	-0.973671400143991	-0.676279401764479	2.85491079166838	0.359649209053937	1
Merged-chr15-59816327-4	chr15	59816223	59816423	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-21364.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-139240546-1	chr4	139240446	139240646	+	783.5	f0_balb.idr	intron (NM_001037761, intron 2 of 9)	intron (NM_001037761, intron 2 of 9)	46435.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	-1.29633872064033	-1.26720680975202	-1.27768629845203	-1.28629446248818	-0.70879630402184	-1.2649358608345	-1.2753139719142	-1.28475360524138	2.50884260628271	0.468217847016783	1
Merged-chr16-66424795-2	chr16	66424695	66424895	+	708.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-232323.0	NR_040512	75501.0	Mm.394300	NR_040512	ENSMUSG00000092599	1700010K23Rik	-	RIKEN cDNA 1700010K23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4684025-4	chr16	4683896	4684096	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023646)	promoter-TSS (NM_023646)	-74.0	NM_023646	83945.0	Mm.248337	NM_023646	ENSMUSG00000004069	Dnaja3	1200003J13Rik|1810053A11Rik|C81173|Tid-1|Tid1l	DnaJ heat shock protein family (Hsp40) member A3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127622974-2	chr10	127622875	127623075	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1827.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	-0.00521177401624934	0.326830518237936	-0.12470471023357	0.145928552727091	-0.00152226676656118	0.0579600535814847	-0.123836507590713	0.0221366292818487	-1.04525736426506	0.60311950928526	1
Merged-chr16-29451892-4	chr16	29451797	29451997	+	891.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164613, intron 14 of 21)	intron (NM_001164613, intron 14 of 21)	-73165.0	NM_175650	268878.0	Mm.9823	NM_175650	ENSMUSG00000048939	Atp13a5	C630015F21Rik	ATPase type 13A5	protein-coding	-0.344955990118683	-0.328730139226661	-0.334012875049475	-0.338110404199831	0.181360978265635	0.565010222450513	-0.332845024512026	-0.337393184105187	3.86498650261279	0.122748029634236	1
Merged-chr2-154653995-2	chr2	154653895	154654095	+	792.583374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3031.0	NM_029362	75608.0	Mm.262480	NM_029362	ENSMUSG00000038467	Chmp4b	2010012F05Rik|C76846|Snf7-2	charged multivesicular body protein 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-139380328-2	chr2	139380228	139380428	+	614.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-113585.0	NM_001356507	228677.0	Mm.100450	NM_175467	ENSMUSG00000039092	Sptlc3	C130053K05Rik	serine palmitoyltransferase, long chain base subunit 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-42875735-4	chr17	42875630	42875830	+	950.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009847, intron 1 of 17)	intron (NM_009847, intron 1 of 17)	694.0	NM_009847	12488.0	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding	4.10715465792113	3.46137513497677	3.76410597083482	3.51049314950369	4.09618413762709	2.65320430990626	3.26419057473634	4.32591766870976	0.0237678350189997	0.966168560483725	0.998431161219273
Merged-chr10-80736053-2	chr10	80735953	80736153	+	747.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007460, intron 1 of 30)	B1_Mur1|SINE|Alu	6222.0	NM_007460	11776.0	Mm.27082	NM_007460	ENSMUSG00000020198	Ap3d1	AA407035|Ap3d|Bolvr|mBLVR1|mh|mocha	adaptor-related protein complex 3, delta 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-105990414-4	chr1	105990312	105990512	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001122676)	promoter-TSS (NM_001122676)	6.0	NM_001122675	227449.0	Mm.210188	NM_001122675	ENSMUSG00000038866	Zcchc2	9930114B20Rik|AW212015	zinc finger, CCHC domain containing 2	protein-coding	7.7995954990196	7.5200855873191	8.00101896339349	7.98085042279086	7.90094180624287	8.1893943494461	8.00231626738928	7.85917715401517	0.155203687241397	0.280465025148736	0.783412873231201
Merged-chr7-141562160-4	chr7	141562031	141562231	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007459)	promoter-TSS (NM_007459)	-49.0	NM_001357068	11772.0	Mm.253090	NM_007459	ENSMUSG00000002957	Ap2a2	2410074K14Rik|AF006990|AW146353|Adtab|C78001|L25	adaptor-related protein complex 2, alpha 2 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72038451-2	chr6	72038351	72038551	+	735.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_046180, intron 1 of 2)	ORR1C2|LTR|ERVL-MaLR	4077.0	NR_046180	330350.0	Mm.246787	NR_046180	ENSMUSG00000108356	9130221F21Rik	9130221F21	RIKEN cDNA 9130221F21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97650283-2	chr11	97650183	97650383	+	589.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13129.0	NM_139311	246198.0	Mm.23685	NM_139311	ENSMUSG00000038437	Mllt6	AI315037|Af17	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47777957-2	chr17	47777847	47778047	+	909.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161723, intron 1 of 8)	B1_Mus2|SINE|Alu	-7797.0	NM_011549	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-102450842-2	chr2	102450742	102450942	+	882.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_010218, exon 1 of 1)	exon (NM_010218, exon 1 of 1)	950.0	NM_010218	14221.0	Mm.29730	NM_010218	ENSMUSG00000075012	Fjx1	-	four jointed box 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65562742-2	chr9	65562642	65562842	+	794.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153119, intron 3 of 5)	intron (NM_153119, intron 3 of 5)	17345.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-32810868-4	chr17	32810766	32810966	+	946.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001267583)	promoter-TSS (NM_001267583)	-935.0	NM_183177	240063.0	Mm.30675	NM_183177	ENSMUSG00000055202	Zfp811	BC052046	zinc finger protein 811	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-18348171-4	chr16	18348093	18348293	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001272029)	promoter-TSS (NM_001272029)	11.0	NM_001272029	11877.0	Mm.293599	NM_033474	ENSMUSG00000000325	Arvcf	-	armadillo repeat gene deleted in velocardiofacial syndrome	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-12979759-4	chr7	12979685	12979885	+	896.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175558, intron 3 of 5)	intron (NM_175558, intron 3 of 5)	1937.0	NM_001168561	269870.0	Mm.62083	NM_175558	ENSMUSG00000033961	Zfp446	A630035I11Rik|A930031C22|AA120513|AV306632	zinc finger protein 446	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-3428303-1	chr6	3428203	3428403	+	571.0	f0_balb.idr	Intergenic	Intergenic	-28732.0	NM_010156	209086.0	Mm.196013	NM_010156	ENSMUSG00000047735	Samd9l	AA175286|ESTM25|mKIAA2005	sterile alpha motif domain containing 9-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-69867391-2	chr8	69867292	69867492	+	725.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_151668, intron 3 of 5)	intron (NR_151668, intron 3 of 5)	20000.0	NM_026818	68709.0	Mm.334584	NM_026818	ENSMUSG00000044006	Cilp2	1110031K21Rik|AA407300|CLIP-2	cartilage intermediate layer protein 2	protein-coding	-0.139425504533674	0.705424850488326	0.838178743870054	-0.13006672171449	-0.138023347341492	-0.115773912436828	-0.122922187971625	-0.129090834462054	-4.15438068075608	0.0725189131944968	1
Merged-chr4-46202382-3	chr4	46202260	46202460	+	882.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CAAAC)n|Simple_repeat|Simple_repeat	-6049.0	NM_011728	22590.0	Mm.247036	NM_011728	ENSMUSG00000028329	Xpa	AI573865|Xpac	xeroderma pigmentosum, complementation group A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-51482710-2	chr10	51482610	51482810	+	569.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008147, intron 4 of 8)	intron (NM_008147, intron 4 of 8)	2098.0	NM_001291892	14727.0	Mm.439661	NM_008147	ENSMUSG00000112023	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-40097637-4	chr10	40097538	40097738	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 1 of 5)	MTC-int|LTR|ERVL-MaLR	44616.0	NM_028247	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-51511077-4	chr3	51510966	51511166	+	977.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27100.0	NM_016858	19338.0	Mm.1664	NM_016858	ENSMUSG00000027739	Rab33b	-	RAB33B, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-73338632-4	chr2	73338536	73338736	+	927.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_029022)	TTS (NM_029022)	25984.0	NM_001355711	74616.0	Mm.247457	NM_029022	ENSMUSG00000008226	Scrn3	4833415E20Rik|AI427019|AV002033|Ses3	secernin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-63925990-1	chr11	63925890	63926090	+	557.0	f1_balb.idr	Intergenic	Intergenic	-3706.0	NM_018805	54710.0	Mm.274426	NM_018805	ENSMUSG00000070407	Hs3st3b1	3-OST-3B|3OST3B1|3Ost3b|AU041882|AW536289|Hs3st3b|m3-OST-3B	heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-85024080-2	chr8	85023947	85024147	+	611.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357202, intron 2 of 6)	B3|SINE|B2	1240.0	NM_001357203	56495.0	Mm.41475	NM_019652	ENSMUSG00000052456	Asna1	1810048H22Rik|ArsA	arsA arsenite transporter, ATP-binding, homolog 1 (bacterial)	protein-coding	1.92410755527304	1.67086164344441	0.985504125222112	0.966274890432778	1.73941954207028	2.2095396274595	2.4679829443381	0.969677142626487	1.40330487621558	0.262115347732197	0.76344292903599
Merged-chr16-4875948-2	chr16	4875848	4876048	+	729.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145359, intron 2 of 2)	intron (NM_145359, intron 2 of 2)	3903.0	NM_145359	207740.0	Mm.268895	NM_145359	ENSMUSG00000039568	Ubald1	1500031H01Rik|BC013706|Fam100a	UBA-like domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-80065326-4	chr2	80065202	80065402	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355141, intron 2 of 15)	RMER19C|LTR|ERVK	-26400.0	NM_001355142	18573.0	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117821996-4	chr10	117821920	117822120	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024457, intron 3 of 7)	intron (NM_024457, intron 3 of 7)	23954.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134026586-2	chr6	134026486	134026686	+	595.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9114.0	NM_001303102	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-84979478-4	chr15	84979367	84979567	+	927.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033273, intron 1 of 9)	intron (NM_001033273, intron 1 of 9)	8504.0	NM_001033273	223739.0	Mm.323925	NM_001033273	ENSMUSG00000036046	5031439G07Rik	AW554572|mKIAA0930	RIKEN cDNA 5031439G07 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-26960241-6	chr8	26960105	26960305	+	717.527771	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17131.0	NM_001101502	353310.0	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-102835322-4	chr9	102835231	102835431	+	857.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001284258, intron 1 of 13)	CpG	411.0	NM_001284258	20187.0	Mm.335391	NM_013649	ENSMUSG00000032547	Ryk	AW536699|ERK-3|Vik	receptor-like tyrosine kinase	protein-coding	2.62947383373612	2.28573942205016	3.03269578209078	2.94880512050158	3.03908901495503	2.10823677330934	2.03975751595491	3.31583382918175	0.010359913291769	0.98922012133409	0.998431161219273
Merged-chr15-80704473-4	chr15	80704388	80704588	+	873.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6825.0	NM_144812	213988.0	Mm.131328	NM_144812	ENSMUSG00000047888	Tnrc6b	2700090M07Rik|A730065C02Rik|AI848765|D230019K20Rik	trinucleotide repeat containing 6b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-38632749-2	chr5	38632649	38632849	+	545.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52077.0	NM_001177902	100515.0	Mm.38277	NM_001081144	ENSMUSG00000046572	Zfp518b	6820424L24Rik|AA410078|AI661722|Znf518b	zinc finger protein 518B	protein-coding	-0.302783861179748	-0.243652774192881	0.106615645425849	-0.431514103036734	-0.181222146011797	-0.424555704210301	-0.428066273706638	-0.431046743194205	-1.71271275635829	0.48398327671169	1
Merged-chr11-54975807-3	chr11	54975736	54975936	+	785.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12896.0	NM_001271455	57783.0	Mm.259671	NM_021327	ENSMUSG00000020400	Tnip1	ABIN|ABIN-1|ABIN1|AU018810|Naf1|Nef|VAN	TNFAIP3 interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139702396-4	chr5	139702318	139702518	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33915.0	NM_174850	231830.0	Mm.240510	NM_174850	ENSMUSG00000036718	Micall2	A930021H16Rik|JRAB|MICAL-L2|mFLJ00139	MICAL-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-45384391-3	chr5	45384368	45384568	+	682.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131933, intron 1 of 5)	RMER6B|LTR|ERVK	39932.0	NR_131933	52401.0	Mm.33854	NR_131933	ENSMUSG00000029092	D5Ertd615e	4930435H24Rik	DNA segment, Chr 5, ERATO Doi 615, expressed	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-99629860-2	chr12	99629760	99629960	+	719.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MERVL-int|LTR|ERVL	-1886.0	NR_045288	73457.0	Mm.383439	NR_045288	ENSMUSG00000100211	1700064M15Rik	-	RIKEN cDNA 1700064M15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-69177189-2	chr12	69177089	69177289	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081406, intron 3 of 3)	B2_Mm1a|SINE|B2	6878.0	NM_025589	66483.0	Mm.379115	NM_025589	ENSMUSG00000049751	Rpl36al	2410038A03Rik|RPL36A	ribosomal protein L36A-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-78872404-2	chr2	78872304	78872504	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356395, intron 2 of 5)	intron (NM_001356395, intron 2 of 5)	2726.0	NR_151457	22193.0	Mm.1485	NM_009454	ENSMUSG00000027011	Ube2e3	Ubce4|ubcM2	ubiquitin-conjugating enzyme E2E 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-58162080-2	chr2	58161980	58162180	+	609.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1894.0	NR_045896	100042926.0	Mm.446515	NR_045895	ENSMUSG00000086862	Gm13546	-	predicted gene 13546	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-62188165-2	chr18	62188065	62188265	+	625.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8065.0	NM_001013754	225609.0	Mm.296917	NM_001013754	ENSMUSG00000054589	Gm9949	EG225609	predicted gene 9949	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-98803407-4	chr7	98803349	98803549	+	940.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-31663.0	NM_001285794	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	-0.0255134114402214	-0.369984464907012	-0.373720261564825	-0.376591591396474	-0.122838580636398	-0.369140156659165	0.1797278412759	-0.376090665378918	1.26595051196294	0.618990746522613	1
Merged-chr8-128519534-3	chr8	128519453	128519653	+	958.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	160312.0	NR_035436	100316680.0		NR_035436	ENSMUSG00000084523	Mir1903	Mirn1903|mmu-mir-1903	microRNA 1903	ncRNA	2.36620942659328	2.01338507349884	3.41956765256901	3.06252756066157	1.97523149569944	1.49132553883438	2.82513244709154	3.34251857590924	-0.403697883251607	0.641303206480684	0.982599433509505
Merged-chr1-163974840-2	chr1	163974740	163974940	+	626.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357049, intron 10 of 24)	intron (NM_001357049, intron 10 of 24)	19956.0	NM_001357049	381306.0	Mm.28152	NM_201364	ENSMUSG00000041406	BC055324	-	cDNA sequence BC055324	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96267314-2	chr3	96267214	96267414	+	572.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1340.0	NM_178215	319154.0	Mm.383293	NM_178215	ENSMUSG00000074403	Hist2h3b	H3-615|H3-616	histone cluster 2, H3b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-132604065-3	chr2	132603959	132604159	+	821.305542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033469, intron 2 of 3)	intron (NR_033469, intron 2 of 3)	5863.0	NR_033469	767814.0	Mm.371752	NR_033468	ENSMUSG00000074783	AU019990	-	expressed sequence AU019990	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-8494600-4	chr6	8494496	8494696	+	956.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14565.0	NR_040452	320312.0	Mm.374890	NR_040452	ENSMUSG00000087305	A430035B10Rik	2810488G03Rik	RIKEN cDNA A430035B10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-4031795-2	chr9	4031695	4031895	+	674.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	277699.0	NM_026276	67618.0	Mm.33970	NM_026276	ENSMUSG00000025894	Aasdhppt	2010309J24Rik|2810407B07Rik|AASD-PPT|CGI-80|LYS2|LYS5	aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-114902343-2	chr6	114902243	114902443	+	787.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356371, intron 2 of 5)	intron (NM_001356371, intron 2 of 5)	19478.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-87113639-2	chr11	87113539	87113739	+	578.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_029652)	TTS (NR_029652)	635.0	NR_029652	723834.0		NR_029652	ENSMUSG00000065589	Mir301	Mirn301|mir-301a|mmu-mir-301	microRNA 301	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91727115-2	chr16	91727015	91727215	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026994, intron 1 of 11)	B3|SINE|B2	1687.0	NM_026994	66609.0	Mm.109823	NM_026994	ENSMUSG00000058240	Cryzl1	2210407J23Rik|2410006O11Rik|QOH-1	crystallin, zeta (quinone reductase)-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-71980658-3	chr6	71980546	71980746	+	916.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61882.0	NR_046180	330350.0	Mm.246787	NR_046180	ENSMUSG00000108356	9130221F21Rik	9130221F21	RIKEN cDNA 9130221F21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19278023-2	chr7	19277923	19278123	+	894.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_177691, intron 3 of 4)	intron (NM_177691, intron 3 of 4)	2026.0	NM_177691	232941.0	Mm.134068	NM_177691	ENSMUSG00000030402	Ppm1n	A930002H20|C79127	protein phosphatase, Mg2+/Mn2+ dependent, 1N (putative)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4755786-4	chr19	4755671	4755871	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025717)	promoter-TSS (NM_025717)	-754.0	NM_025717	66704.0	Mm.396734	NM_025717	ENSMUSG00000033760	Rbm4b	4921506I22Rik|AI504630|AI506404|Lark2|Neosin	RNA binding motif protein 4B	protein-coding	2.80124488171491	2.95237571638843	2.36533270544738	2.86550826010185	3.47718424187884	2.61588921036917	1.53588291901701	2.78656296919915	0.0611487671747096	0.938938701176513	0.998431161219273
Merged-chr17-70850591-3	chr17	70850515	70850715	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164076)	promoter-TSS (NM_001164076)	595.0	NM_009372	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-8922152-6	chr12	8922105	8922305	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008640, exon 1 of 7)	exon (NM_008640, exon 1 of 7)	898.0	NM_008640	17775.0	Mm.30071	NM_008640	ENSMUSG00000020585	Laptm4a	AA286466|LAPTM4|MTP|Mtrp|mKIAA0108	lysosomal-associated protein transmembrane 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-122921643-4	chr6	122921537	122921737	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199311)	promoter-TSS (NM_199311)	-211.0	NM_199311	269799.0	Mm.297275	NM_199311	ENSMUSG00000049037	Clec4a1	BC049354|Dcir4	C-type lectin domain family 4, member a1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127316715-1	chr10	127316615	127316815	+	1000.0	f1_balb.idr	Intergenic	B3|SINE|B2	-4929.0	NM_001171582	216443.0	Mm.28173	NM_001003913	ENSMUSG00000040354	Mars	Metrs|Mtrns	methionine-tRNA synthetase	protein-coding	0.156936792718448	-0.00412484508720057	-0.0136528799385672	0.522094527545001	-0.0319523614186261	-0.00200427040783685	-0.0115341294317775	1.41309519525974	1.77000181080598	0.39249103761336	1
Merged-chr6-31108171-4	chr6	31108075	31108275	+	916.56665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110471, intron 3 of 3)	intron (NR_110471, intron 3 of 3)	-45082.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-142421948-2	chr7	142421844	142422044	+	574.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-12906.0	NR_153437	55925.0	Mm.213002	NM_018802	ENSMUSG00000031098	Syt8	-	synaptotagmin VIII	protein-coding	-0.590535183227988	-0.927506822323212	-0.936065523452905	-0.937949444978677	-0.686580999095573	-0.925042559271787	-0.935525276798409	-0.781629005664263	0.114635924104852	0.969143117123263	1
Merged-chr7-112104183-2	chr7	112104083	112104283	+	590.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133758, intron 23 of 27)	intron (NM_133758, intron 23 of 27)	54513.0	NM_001360260	50781.0	Mm.55143	NM_015814	ENSMUSG00000030772	Dkk3	AW061014|C87148|dkk-3|mDkk-3	dickkopf WNT signaling pathway inhibitor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-72225710-2	chr5	72225610	72225810	+	559.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_003966, intron 1 of 22)	intron (NR_003966, intron 1 of 22)	22367.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120156001-2	chr8	120155901	120156101	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163760, intron 8 of 12)	intron (NM_001163760, intron 8 of 12)	11072.0	NM_001163760	234797.0	Mm.101958	NM_172286	ENSMUSG00000031824	6430548M08Rik	AW049007|Kiaa0513|mKIAA0513	RIKEN cDNA 6430548M08 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-105033866-1	chr9	105033766	105033966	+	714.0	f0_c57.idr	3' UTR (NM_001357439, exon 16 of 16)	3' UTR (NM_001357439, exon 16 of 16)	-19402.0	NM_053159	94062.0	Mm.29746	NM_053159	ENSMUSG00000032563	Mrpl3	2010320L16Rik|5930422H18Rik|AA407889	mitochondrial ribosomal protein L3	protein-coding	3.3516715097955	3.96475731892173	4.68012547059043	3.24827143341806	4.49681178476351	5.3131018651996	4.7540674378971	3.56843274881343	0.944528716480914	0.0635111152536061	0.375541696046961
Merged-chr9-7336933-4	chr9	7336854	7337054	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7443.0	NM_001320077	17381.0	Mm.2055	NM_008605	ENSMUSG00000049723	Mmp12	AV378681|MME|Mmel	matrix metallopeptidase 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-13156587-2	chr8	13156487	13156687	+	727.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-2574.0	NM_001317353	16783.0	Mm.16716	NM_010684	ENSMUSG00000031447	Lamp1	CD107a|LGP-120|LGP-A|Lamp-1|P2B|Perk	lysosomal-associated membrane protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117864842-2	chr10	117864742	117864942	+	844.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-18868.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141197701-2	chr4	141197601	141197801	+	641.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172518, intron 7 of 9)	(TG)n|Simple_repeat|Simple_repeat	-16255.0	NM_001081174	76166.0	Mm.271064	NM_001081174	ENSMUSG00000073733	Rsg1	6330545A04Rik|Gm723|b2b2804Clo|b2b2827Clo	REM2 and RAB-like small GTPase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-79181947-3	chr12	79181863	79182063	+	819.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021557, intron 6 of 6)	B2_Mm2|SINE|B2	8998.0	NM_001362269	17252.0	Mm.291799	NM_021557	ENSMUSG00000066441	Rdh11	2610319N22Rik|AI428145|AU045252|Arsdr1|C85936|CGI-82|HCBP12|M42C60|Mdt1|Psdr1|SCALD|UBE-1c1|Ube-1c|ralR1	retinol dehydrogenase 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-67784956-1	chr15	67784856	67785056	+	548.0	f1_balb.idr	Intergenic	Intergenic	473900.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	0.941507917925562	0.998540974084377	1.89976592362821	1.62387146593343	1.92447477082966	1.75007579245488	1.80819911577666	1.17912640219673	0.823282841388631	0.50831173398172	0.943490746335501
Merged-chr4-95107017-2	chr4	95106917	95107117	+	779.916687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54795.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132564155-4	chr4	132564057	132564257	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081211)	promoter-TSS (NM_001081211)	90.0	NM_001081211	19204.0	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-83643600-3	chr7	83643511	83643711	+	914.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001360089, exon 7 of 7)	3' UTR (NM_001360089, exon 7 of 7)	11594.0	NM_023377	170460.0	Mm.357953	NM_023377	ENSMUSG00000046027	Stard5	2310058G22Rik|AI607880|D7Ertd152e	StAR-related lipid transfer (START) domain containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-84030557-2	chr1	84030457	84030657	+	791.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	188404.0	NR_105771	102465181.0		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-8981053-1	chr3	8980953	8981153	+	813.0	f0_balb.idr	intron (NM_009412, intron 1 of 5)	MTD|LTR|ERVL-MaLR	-16907.0	NM_001025261	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-108147570-2	chr3	108147470	108147670	+	718.25	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001305461)	TTS (NM_001305461)	-1418.0	NM_010306	14679.0	Mm.271703	NM_010306	ENSMUSG00000000001	Gnai3	AI158965|AW537698|Galphai3|Gnai-3	guanine nucleotide binding protein (G protein), alpha inhibiting 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27735284-2	chr2	27735184	27735384	+	790.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290482, intron 1 of 9)	intron (NM_001290482, intron 1 of 9)	24701.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3766573-4	chr4	3766469	3766669	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 10 of 12)	MTD|LTR|ERVL-MaLR	51605.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-86701483-2	chr10	86701383	86701583	+	704.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011631, intron 5 of 17)	intron (NM_011631, intron 5 of 17)	3961.0	NM_011631	22027.0	Mm.87773	NM_011631	ENSMUSG00000020048	Hsp90b1	ERp99|GRP94|TA-3|Targ2|Tra-1|Tra1|endoplasmin|gp96	heat shock protein 90, beta (Grp94), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-12947923-4	chr18	12947844	12948044	+	965.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6103.0	NM_207530	64291.0	Mm.259470	NM_020573	ENSMUSG00000044252	Osbpl1a	G430090F17Rik|Gm753|ORP-1|Osbpl1b	oxysterol binding protein-like 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-64012019-2	chr9	64011919	64012119	+	583.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008542, intron 2 of 3)	intron (NM_008542, intron 2 of 3)	10040.0	NM_008542	17130.0	Mm.325757	NM_008542	ENSMUSG00000036867	Smad6	Madh6|b2b390Clo	SMAD family member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-108580687-2	chr8	108580587	108580787	+	613.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_077224, intron 1 of 1)	intron (NR_077224, intron 1 of 1)	3990.0	NR_077224	109215.0	Mm.65282	NR_077224	ENSMUSG00000110613	Lncbate1	3010033K07Rik|Lnc-BATE1	brown adipose tissue enriched long non-coding RNA 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76230970-3	chr15	76230868	76231068	+	860.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163542, intron 1 of 33)	intron (NM_001163542, intron 1 of 33)	410.0	NM_001163542	18810.0	Mm.234912	NM_011117	ENSMUSG00000022565	Plec	AA591047|AU042537|EBS1|PCN|PLTN|Plec1	plectin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-18713094-4	chr19	18713009	18713209	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177640)	promoter-TSS (NM_177640)	-127.0	NM_177640	225995.0	Mm.28101	NM_177640	ENSMUSG00000047044	D030056L22Rik	-	RIKEN cDNA D030056L22 gene	protein-coding	4.97888940491637	5.07967295093894	5.07783486105991	4.67686983474417	5.34627258124585	5.02967726602987	4.69684670508554	4.93828336680793	0.0823081715630176	0.798638701259091	0.998431161219273
Merged-chr4-109665920-6	chr4	109665813	109666013	+	975.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007671)	promoter-TSS (NM_007671)	-541.0	NM_007671	12580.0	Mm.1912	NM_007671	ENSMUSG00000028551	Cdkn2c	C77269|INK4c|p18|p18-INK4c|p18-INK6|p18INK4c	cyclin dependent kinase inhibitor 2C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-113668065-2	chr5	113667965	113668165	+	605.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-17675.0	NM_008153	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91387019-3	chr16	91386912	91387112	+	735.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347258, intron 4 of 7)	intron (NM_001347258, intron 4 of 7)	14229.0	NM_001110498	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-128754924-1	chr6	128754824	128755024	+	565.5	f1_c57bl6.idr	Intergenic	Intergenic	-31878.0	NM_001099918	100043861.0	Mm.66911	NM_001099918	ENSMUSG00000079299	Klrb1	4930431A04Rik|Gm4696|Klrb1g|Klrb6|Ly-55|Ly55|NKR-P1G|Nkrp-1e|Nkrp1g	killer cell lectin-like receptor subfamily B member 1	protein-coding	0.124914882744193	-0.381161173742547	-0.578102935794547	-0.416863814397184	-0.584793711693053	-0.573687987657506	-0.577308951364188	-0.580393542759605	-3.37855570915084	0.192193581691189	1
Merged-chr17-86969801-4	chr17	86969746	86969946	+	938.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145491, intron 2 of 4)	intron (NM_145491, intron 2 of 4)	6735.0	NM_145491	104215.0	Mm.826	NM_145491	ENSMUSG00000024143	Rhoq	Arhq|TC10A|Tc10	ras homolog family member Q	protein-coding	3.43152303666013	1.37141679906837	2.45068002102298	1.9578989761408	2.64530604099452	1.38034254954358	2.69096641739442	2.60448107490983	-0.247029248201693	0.800386039250433	0.998431161219273
Merged-chr6-48445015-3	chr6	48444893	48445093	+	926.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001085415)	promoter-TSS (NM_001085415)	97.0	NM_001085415	68910.0	Mm.2464	NM_020589	ENSMUSG00000068551	Zfp467	1190001I08Rik|AB041616|AI426952|AV017623|EZI|MNCb-3350|Znf467	zinc finger protein 467	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-30057665-2	chr11	30057565	30057765	+	641.916626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MuRRS-int|LTR|ERV1	-31632.0	NM_146016	237711.0	Mm.445271	NM_146016	ENSMUSG00000044072	Eml6	2900083P10Rik|C230094A16Rik|EMAP-6	echinoderm microtubule associated protein like 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-20265263-2	chr16	20265163	20265363	+	749.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2-int|LTR|ERVL-MaLR	-23905.0	NM_198599	208158.0	Mm.326383	NM_198599	ENSMUSG00000041205	Map6d1	A330066I15Rik	MAP6 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-47255824-4	chr4	47255731	47255931	+	825.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009928, intron 6 of 39)	intron (NM_009928, intron 6 of 39)	47819.0	NM_009928	12819.0	Mm.233547	NM_009928	ENSMUSG00000028339	Col15a1	-	collagen, type XV, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-154934595-2	chr4	154934495	154934695	+	624.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6518.0	NM_178931	230979.0	Mm.215147	NM_178931	ENSMUSG00000042333	Tnfrsf14	Atar|HveA|Hvem|Tnfrs14	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-48411190-2	chr17	48411090	48411290	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_207219, intron 2 of 5)	intron (NM_207219, intron 2 of 5)	740.0	NM_001357904	106821.0	Mm.203943	NM_207219	ENSMUSG00000040771	Oard1	AI314976|AW558560	O-acyl-ADP-ribose deacylase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-57651923-2	chr9	57651823	57652023	+	722.166626	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001304761, exon 2 of 15)	5' UTR (NM_001304761, exon 2 of 15)	1708.0	NM_001304761	12988.0	Mm.21974	NM_007783	ENSMUSG00000032312	Csk	AW212630|p50CSK	c-src tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-46770863-1	chr7	46770763	46770963	+	542.0	f0_balb.idr	intron (NM_001005247, intron 16 of 22)	intron (NM_001005247, intron 16 of 22)	19030.0	NM_001357491	20209.0	Mm.200941	NM_011314	ENSMUSG00000057465	Saa2	AW111173|Saa-2|Saa1	serum amyloid A 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-36834229-4	chr19	36834133	36834333	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163635)	promoter-TSS (NM_001163635)	1.0	NM_001163635	74493.0	Mm.249310	NM_001163635	ENSMUSG00000024811	Tnks2	5430432P15Rik|AA517131|AI662480|ARTD6|TNKS-2|Tank2	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-35113109-2	chr10	35113009	35113209	+	864.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	629709.0	NM_010237	14302.0	Mm.332432	NM_010237	ENSMUSG00000019779	Frk	BSK|BSK/IYK|C85044|GTK|RAK	fyn-related kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-46958518-4	chr7	46958461	46958661	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001040695)	promoter-TSS (NM_001040695)	-43.0	NM_001040695	54122.0	Mm.1999	NM_016855	ENSMUSG00000043262	Uevld	8430408E05Rik|Attp	UEV and lactate/malate dehyrogenase domains	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-96083933-2	chr16	96083833	96084033	+	618.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1505.0	NM_145125	93871.0	Mm.240871	NM_145125	ENSMUSG00000022914	Brwd1	5330419I02Rik|D530019K20Rik|G1-403-16|Wdr9|repro5	bromodomain and WD repeat domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-22051141-4	chr13	22051062	22051262	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	7932.0	NM_178198	319183.0	Mm.371766	NM_178198	ENSMUSG00000069300	Hist1h2bj	-	histone cluster 1, H2bj	protein-coding	4.03660657696835	3.82460048832708	3.11128980920425	3.98460444586348	3.17873498463565	4.52005756451335	4.6359420438128	1.99029994065505	0.225180119189656	0.725330720659629	0.998431161219273
Merged-chr15-79436768-4	chr15	79436648	79436848	+	965.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359863, intron 2 of 10)	intron (NM_001359863, intron 2 of 10)	5070.0	NM_001289899	27373.0	Mm.30199	NM_013767	ENSMUSG00000022433	Csnk1e	AI426939|AI551861|AW457082|CK1epsilon|CKIe|KC1epsilon|tau	casein kinase 1, epsilon	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-38433782-4	chr6	38433695	38433895	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177185)	promoter-TSS (NM_177185)	-130.0	NM_177185	320538.0	Mm.302831	NM_177185	ENSMUSG00000038538	Ubn2	2900060J04Rik|6030408G03Rik|BC060116|D130059P03Rik|mKIAA2030	ubinuclein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-133547612-1	chr3	133547512	133547712	+	547.0	f1_c57bl6.idr	Intergenic	Intergenic	-3222.0	NM_001346736	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-58017021-2	chr15	58016921	58017121	+	984.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT2B4|LTR|ERVL	17273.0	NM_029418	75758.0	Mm.455792	NM_029418	ENSMUSG00000101892	9130401M01Rik	AI849328	RIKEN cDNA 9130401M01 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116334464-2	chr11	116334348	116334548	+	842.666626	f1_balb.idr|f1_c57bl6.idr	exon (NM_008240, exon 2 of 3)	exon (NM_008240, exon 2 of 3)	906.0	NM_008240	15223.0	Mm.378938	NM_008240	ENSMUSG00000034227	Foxj1	FKHL-13|HFH-4|Hfh4	forkhead box J1	protein-coding	1.98274904218096	1.63586687679534	0.936965302727401	1.15912822009311	1.11074655569384	0.966888526312394	2.09877465904767	2.61565420376188	1.063796339629	0.392089083515847	0.881062209518629
Merged-chr9-110659683-2	chr9	110659583	110659783	+	632.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028312, intron 1 of 6)	B4A|SINE|B4	3180.0	NM_028312	72654.0	Mm.249115	NM_028312	ENSMUSG00000019659	Ccdc12	2700094L05Rik|C76605	coiled-coil domain containing 12	protein-coding	-0.0728842508324915	0.134587027676295	-0.294045864416316	-0.296410314233842	-0.299714228701825	0.142586964286298	-0.293365916355703	-0.295998828961	-0.524431037253044	0.834024566741004	1
Merged-chr4-130918782-6	chr4	130918626	130918826	+	920.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010686, intron 1 of 7)	MIRb|SINE|MIR	5392.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-60687003-2	chr13	60686953	60687153	+	691.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	84842.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	-0.885343988398316	-0.873197811915141	-0.879568534556306	-0.464008891048743	-0.884809499207366	-0.870535133016439	-0.878945546113603	-0.458408536970068	0.0285539633070526	0.992673327504828	1
Merged-chr6-99242340-4	chr6	99242255	99242455	+	901.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001197321, intron 2 of 17)	intron (NM_001197321, intron 2 of 17)	24160.0	NM_001197321	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78942893-4	chr15	78942774	78942974	+	903.783325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_133800)	TTS (NM_133800)	-4850.0	NM_001039156	110253.0	Mm.123714	NM_138579	ENSMUSG00000033088	Triobp	AI428493|EST478828|Tara|mKIAA1662	TRIO and F-actin binding protein	protein-coding	0.342794361542466	0.573570077164776	0.102965435637282	0.0990463770384581	0.349140588833543	0.582753203739269	0.273863932274857	0.0997301842235801	0.311732419198392	0.872411797079703	1
Merged-chr2-58199619-4	chr2	58199488	58199688	+	840.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35614.0	NR_045895	100042926.0	Mm.446515	NR_045895	ENSMUSG00000086862	Gm13546	-	predicted gene 13546	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-56599595-3	chr19	56599513	56599713	+	628.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_025811)	TTS (NM_025811)	51352.0	NM_025811	66866.0	Mm.46346	NM_025811	ENSMUSG00000025078	Nhlrc2	1200003G01Rik|AI835049|AV002846|AW496455	NHL repeat containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-4103739-2	chr5	4103639	4103839	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_020010, intron 1 of 9)	intron (NM_020010, intron 1 of 9)	958.0	NM_020010	13121.0	Mm.140158	NM_020010	ENSMUSG00000001467	Cyp51	AI426508|CYPLI|Cyp51a1|Ldm|P450-14DM|P450LI	cytochrome P450, family 51	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91084663-4	chr2	91084573	91084773	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12005.0	NM_011355	20375.0	Mm.1302	NM_011355	ENSMUSG00000002111	Spi1	Dis-1|Dis1|PU.1|Sfpi-1|Sfpi1|Spi-1|Tcfpu1|Tfpu.1	spleen focus forming virus (SFFV) proviral integration oncogene	protein-coding	3.52609709823151	4.53220666604949	4.70441380982225	4.11780202140447	4.40941145833212	3.9100947149606	4.42389315406774	3.57626534948495	-0.204970041573602	0.65685761535481	0.988505467120973
Merged-chr7-100208565-2	chr7	100208465	100208665	+	549.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11A|LTR|ERVK	-19042.0	NM_027629	70974.0	Mm.440524	NM_027629	ENSMUSG00000030729	Pgm2l1	4931406N15Rik|AI553438|BM32A	phosphoglucomutase 2-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-125637861-2	chr7	125637764	125637964	+	903.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34435.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-178369469-4	chr1	178369368	178369568	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31653.0	NR_149827	51810.0	Mm.86589	NM_016805	ENSMUSG00000039630	Hnrnpu	AA408410|AI256620|AL024194|AL024437|AW557595|C86794|Hnrpu|SAFA|Sp120|hnRNP U	heterogeneous nuclear ribonucleoprotein U	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-11094492-3	chr8	11094381	11094581	+	621.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-86051.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-39536198-2	chr1	39536098	39536298	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_028043, exon 1 of 7)	exon (NM_028043, exon 1 of 7)	497.0	NM_028043	52846.0	Mm.259421	NM_028043	ENSMUSG00000003135	Cnot11	2410015L18Rik|C40|D1Bwg0212e	CCR4-NOT transcription complex, subunit 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-80952178-1	chr15	80952078	80952278	+	562.0	f1_c57bl6.idr	intron (NM_009634, intron 1 of 12)	intron (NM_009634, intron 1 of 12)	3688.0	NM_009634	11564.0	Mm.38151	NM_009634	ENSMUSG00000022407	Adsl	Adl|Asl	adenylosuccinate lyase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-86988449-1	chr17	86988349	86988549	+	1000.0	f1_balb.idr	intron (NM_145491, intron 2 of 4)	ID4|SINE|ID	25338.0	NM_145491	104215.0	Mm.826	NM_145491	ENSMUSG00000024143	Rhoq	Arhq|TC10A|Tc10	ras homolog family member Q	protein-coding	1.58827081782006	1.06380425842305	2.97163963679944	1.85444526664354	0.953062136654544	3.04011533250437	2.33416707813065	1.0029268428343	0.16622521504932	0.931479261058455	0.998431161219273
Merged-chr14-61668194-3	chr14	61668089	61668289	+	875.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028264, intron 1 of 6)	intron (NR_028264, intron 1 of 6)	14184.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-46212687-2	chr18	46212587	46212787	+	955.6666869999999	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178872)	promoter-TSS (NM_178872)	-80.0	NM_178872	28105.0	Mm.277382	NM_178872	ENSMUSG00000033949	Trim36	D18Wsu100e|haprin	tripartite motif-containing 36	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-136136250-1	chr1	136136150	136136350	+	546.5	f0_c57.idr	intron (NM_001039472, intron 1 of 34)	URR1B|DNA|hAT-Charlie	4860.0	NR_153829	16565.0	Mm.276135	NM_019962	ENSMUSG00000041642	Kif21b	2610511N21Rik|mKIAA0449	kinesin family member 21B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-12016373-4	chr19	12016279	12016479	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20361.0	NM_146680	258675.0	Mm.271517	NM_146680	ENSMUSG00000067529	Olfr1423	MOR239-3	olfactory receptor 1423	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80179583-1	chr10	80179483	80179683	+	629.0	f0_balb.idr	5' UTR (NM_007909, exon 1 of 4)	5' UTR (NM_007909, exon 1 of 4)	101.0	NM_007909	13637.0	Mm.1478	NM_007909	ENSMUSG00000003070	Efna2	CEK7L|Elf1|Epl6|Eplg6|Lerk6	ephrin A2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-77813788-3	chr18	77813660	77813860	+	648.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013831, intron 1 of 14)	intron (NM_013831, intron 1 of 14)	-17370.0	NR_152167	619308.0	Mm.490456	NM_001033812		F830208F22Rik	-	RIKEN cDNA F830208F22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-121759905-3	chr9	121759811	121760011	+	817.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033503)	promoter-TSS (NR_033503)	32.0	NR_033503	320301.0	Mm.373883	NR_033503		E530011L22Rik	-	RIKEN cDNA E530011L22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-9772939-4	chr1	9772844	9773044	+	924.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24562.0	NM_173443	70675.0	Mm.274493	NM_173443	ENSMUSG00000045210	Vcpip1	4932442A08|5730421J18Rik|5730538E15Rik|VCIP135|mKIAA1850	valosin containing protein (p97)/p47 complex interacting protein 1	protein-coding	1.09020016611449	1.18455547457253	1.80038268846815	1.13057414754343	1.57523733832176	1.52662801598225	1.47570078967527	1.55147636368798	0.70621243022122	0.548715076459703	0.958294539645345
Merged-chr9-40642835-7	chr9	40642705	40642905	+	918.9541019999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43159.0	NM_133733	71566.0	Mm.280560	NM_133733	ENSMUSG00000032024	Clmp	9030425E11Rik|ACAM|ASP5|AW557819	CXADR-like membrane protein	protein-coding	2.5539891951244	2.97536487553699	1.81957611236832	2.45849343932437	2.67332134081353	3.42312347945907	3.16495606739838	2.70716781239567	0.975730781202635	0.181954406850198	0.655513168938505
Merged-chr18-46551010-2	chr18	46550910	46551110	+	694.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	23523.0	NM_173394	225471.0	Mm.149280	NM_173394	ENSMUSG00000056130	Ticam2	B430113A10|TICAM-2|TRAM|Tirp|Trif	toll-like receptor adaptor molecule 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-4370349-4	chr8	4370248	4370448	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20760.0	NM_009138	20300.0	Mm.7275	NM_009138	ENSMUSG00000023235	Ccl25	A130072A22Rik|AI852536|CKb15|Scya25|TECK	chemokine (C-C motif) ligand 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-69953431-3	chr8	69953333	69953533	+	701.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286450, intron 1 of 12)	intron (NM_001286450, intron 1 of 12)	20950.0	NM_001113346	234366.0	Mm.270044	NM_145596	ENSMUSG00000036180	Gatad2a	1110066C11Rik|BC031407|C80248	GATA zinc finger domain containing 2A	protein-coding	1.1654821702087	1.17010585076624	1.50083213935328	0.945902787590696	1.62261716402226	1.17893903693025	0.775142143204829	0.949742963623097	-0.109166151376069	0.935130110373239	0.998431161219273
Merged-chr11-50207343-3	chr11	50207247	50207447	+	872.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290769, intron 3 of 7)	intron (NM_001290769, intron 3 of 7)	3473.0	NM_001290769	18412.0	Mm.40828	NM_011018	ENSMUSG00000015837	Sqstm1	A170|OSF-6|Osi|STAP|STONE14|p62	sequestosome 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-90426457-4	chr7	90426359	90426559	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_027298, exon 1 of 1)	5' UTR (NM_027298, exon 1 of 1)	147.0	NM_027298	70054.0	Mm.307198	NM_027298	ENSMUSG00000044362	Ccdc89	1700019B01Rik|AU022100|BOIP	coiled-coil domain containing 89	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-24539697-2	chr5	24539597	24539797	+	602.833313	f1_balb.idr|f1_c57bl6.idr	exon (NM_001310476, exon 2 of 6)	exon (NM_001310476, exon 2 of 6)	760.0	NM_080444	117590.0	Mm.207071	NM_080444	ENSMUSG00000038204	Asb10	Asb-10|BB137407	ankyrin repeat and SOCS box-containing 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-99184582-2	chr8	99184482	99184682	+	869.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039154, intron 7 of 12)	intron (NM_001039154, intron 7 of 12)	172695.0	NR_110579	100873092.0	Mm.414599	NR_110579	ENSMUSG00000089819	Gm15679	-	predicted gene 15679	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-51746037-2	chr3	51745937	51746137	+	577.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 2 of 4)	L1Md_F2|LINE|L1	84858.0	NM_001310482	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-51065974-1	chr14	51065874	51066074	+	558.0	f1_balb.idr	Intergenic	Intergenic	5468.0	NM_207558	404319.0	Mm.377276	NM_207558	ENSMUSG00000035932	Olfr750	GA_x5J8B7W5WBF-6267395-6266441|GA_x6K02T2PMLR-6808276-6807281|MOR103-18	olfactory receptor 750	protein-coding	2.01277801358991	1.61231654017623	1.56300229585741	2.02908112714686	2.02990775846435	2.28560575422771	1.57402172784444	1.13572975499417	0.0371096061697527	0.972409231433386	0.998431161219273
Merged-chr15-83031624-2	chr15	83031524	83031724	+	804.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271411, intron 1 of 5)	intron (NM_001271411, intron 1 of 5)	-1674.0	NM_001271413	74039.0	Mm.32584	NM_028728	ENSMUSG00000058099	Nfam1	4921501M20Rik|Cnaip	Nfat activating molecule with ITAM motif 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-57898138-4	chr15	57898028	57898228	+	981.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5710.0	NM_024207	67819.0	Mm.289387	NM_024207	ENSMUSG00000022365	Derl1	1110021N07Rik|AI195141|AW551338|Derlin-1	Der1-like domain family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119470919-2	chr11	119470819	119471019	+	566.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_153849, intron 2 of 3)	intron (NR_153849, intron 2 of 3)	20316.0	NR_153849	78439.0	Mm.440446	NR_153849	ENSMUSG00000109408	A930037H05Rik	Gm44935	RIKEN cDNA A930037H05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-140948397-4	chr7	140948227	140948427	+	909.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_053088)	TTS (NM_053088)	1912.0	NM_053088	73835.0	Mm.389989	NM_053088	ENSMUSG00000025489	Ifitm5	1110003J06Rik|AW213665|Bril|DSPA1|Hrmp1|Hrtm1	interferon induced transmembrane protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-35554923-4	chr7	35554837	35555037	+	968.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033080, intron 1 of 2)	intron (NM_033080, intron 1 of 2)	991.0	NM_033080	110959.0	Mm.410206	NM_033080	ENSMUSG00000034875	Nudt19	D7Rp2|D7Rp2-r|D7Rp2-s|D7Rp2e|RP2-r|RP2-s	nudix (nucleoside diphosphate linked moiety X)-type motif 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99705755-4	chr15	99705653	99705853	+	839.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031842, intron 6 of 12)	intron (NM_031842, intron 6 of 12)	3466.0	NM_031842	83797.0	Mm.273756	NM_031842	ENSMUSG00000023018	Smarcd1	AA407987|Baf60a|D15Kz1	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-42015693-4	chr13	42015597	42015797	+	933.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36324.0	NM_007772	110521.0	Mm.4808	NM_007772	ENSMUSG00000021366	Hivep1	Cryabp1	human immunodeficiency virus type I enhancer binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-18188739-4	chr10	18188626	18188826	+	858.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195036, intron 3 of 20)	L1MC5|LINE|L1	22164.0	NM_001195036	100045792.0	Mm.380617	NM_001195036	ENSMUSG00000071392	Ect2l	C330021H03Rik|Gm10331	epithelial cell transforming sequence 2 oncogene-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-45272377-4	chr9	45272284	45272484	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3235.0	NM_001324486	16154.0	Mm.379327	NM_008348	ENSMUSG00000032089	Il10ra	AW553859|CDw210|CDw210a|IL-10R1|IL-10RA|Il10r|mIL-10R	interleukin 10 receptor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-144219454-4	chr2	144219320	144219520	+	879.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30130.0	NR_136884	433481.0	Mm.330630	NR_136884	ENSMUSG00000074758	Gm5535	EG433481	predicted gene 5535	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-59881755-2	chr2	59881655	59881855	+	787.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159636, intron 1 of 10)	intron (NM_001159636, intron 1 of 10)	851.0	NM_001159636	72137.0	Mm.288734	NM_028118	ENSMUSG00000026988	Wdsub1	1700048E19Rik|2610014F08Rik	WD repeat, SAM and U-box domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-18996579-2	chr10	18996465	18996665	+	675.25	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	15398.0	NM_001166402	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-87536295-4	chr6	87536185	87536385	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3026.0	NM_001286610	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-144677676-4	chr3	144677602	144677802	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42633.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	5.45026544949226	5.92596272222421	5.65912878001757	6.07740876569096	6.09332371739154	6.14551936380032	6.21666268681439	6.20331132424936	0.408907819490061	0.0825257325033565	0.439673063310511
Merged-chr16-38394374-4	chr16	38394279	38394479	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32189.0	NM_022318	64082.0	Mm.390856	NM_022318	ENSMUSG00000022803	Popdc2	AV006127|Pop2	popeye domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-8866889-4	chr13	8866778	8866978	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039388, intron 1 of 13)	intron (NM_001039388, intron 1 of 13)	4166.0	NM_001039389	207615.0	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-67103275-2	chr15	67103175	67103375	+	636.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009177, exon 9 of 9)	3' UTR (NM_009177, exon 9 of 9)	73607.0	NM_009177	20442.0	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-162939812-4	chr2	162939721	162939921	+	986.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3644.0	NM_001081338	241764.0	Mm.187086	NM_001081338	ENSMUSG00000035576	L3mbtl1	C630004G01|L3mbtl|mKIAA0681	L3MBTL1 histone methyl-lysine binding protein	protein-coding	2.88454765172361	3.40274665042126	2.43944793262524	2.85637316466956	3.37778241216166	3.16716979856805	3.15303367498639	1.5426662799386	0.0781681424094511	0.918028110508249	0.998431161219273
Merged-chr5-16947651-2	chr5	16947551	16947751	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	393750.0	NM_001289461	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-66507782-2	chr9	66507682	66507882	+	548.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_175206)	TTS (NM_175206)	6811.0	NM_175206	74165.0	Mm.297998	NM_175206	ENSMUSG00000050503	Fbxl22	1110004B15Rik	F-box and leucine-rich repeat protein 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-125762530-1	chr7	125762430	125762630	+	557.0	f0_balb.idr	intron (NM_001358287, intron 4 of 26)	intron (NM_001358287, intron 4 of 26)	54660.0	NM_001358287	233865.0	Mm.274389	NM_001081022	ENSMUSG00000032743	D430042O09Rik	Kiaa0556	RIKEN cDNA D430042O09 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-72601956-6	chr14	72601878	72602078	+	892.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207636, intron 3 of 25)	intron (NM_207636, intron 3 of 25)	108025.0	NM_207636	319448.0	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-77790175-2	chr12	77790075	77790275	+	889.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	380034.0	NM_001252616	53618.0	Mm.35628	NM_016893	ENSMUSG00000021065	Fut8	-	fucosyltransferase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-18923798-2	chr14	18923698	18923898	+	663.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-29531.0	NM_001360327	218793.0	Mm.23551	NM_144839	ENSMUSG00000058317	Ube2e2	BC016265	ubiquitin-conjugating enzyme E2E 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47507414-2	chr17	47507314	47507514	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081635, intron 1 of 6)	intron (NM_001081635, intron 1 of 6)	2363.0	NM_001081635	12445.0	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-71442236-4	chr6	71442158	71442358	+	926.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1621.0	NM_024288	68477.0	Mm.28474	NM_024288	ENSMUSG00000002222	Rmnd5a	1110007A06Rik|AJ237586|AW125795|Gid2|MTA.D02.090	required for meiotic nuclear division 5 homolog A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-160157291-4	chr2	160157167	160157367	+	962.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	140614.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76698758-1	chr15	76698658	76698858	+	1000.0	f1_balb.idr	exon (NM_182805, exon 8 of 11)	exon (NM_182805, exon 8 of 11)	2032.0	NM_182805	76282.0	Mm.30130	NM_182805	ENSMUSG00000022546	Gpt	1300007J06Rik|2310022B03Rik|ALT|ALT1|Gpt-1|Gpt1	glutamic pyruvic transaminase, soluble	protein-coding	-0.662826441749988	-1.00555184936033	-1.01675512286785	-1.01992432642343	-0.654846858003193	-1.00312405325568	-1.01421894731451	-1.01959449741028	0.0418081237259606	0.989738874530268	1
Merged-chr4-136172725-2	chr4	136172625	136172825	+	938.833374	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_177733, exon 1 of 7)	5' UTR (NM_177733, exon 1 of 7)	451.0	NM_177733	242705.0	Mm.307932	NM_177733	ENSMUSG00000018983	E2f2	E2F-2	E2F transcription factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127195018-2	chr7	127194918	127195118	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357817, intron 3 of 6)	intron (NM_001357817, intron 3 of 6)	1059.0	NM_001285907	70233.0	Mm.28050	NM_027353	ENSMUSG00000042502	Cd2bp2	1500011B02Rik|2410024K20Rik|AW048183	CD2 antigen (cytoplasmic tail) binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-131494626-3	chr2	131494573	131494773	+	922.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177840, intron 1 of 3)	intron (NM_001177840, intron 1 of 3)	2811.0	NM_001177838	228608.0	Mm.136586	NM_145533	ENSMUSG00000027333	Smox	B130066H01Rik|PAO|PAOh1|SMO	spermine oxidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19077296-1	chr7	19077196	19077396	+	1000.0	f1_balb.idr	intron (NM_010058, intron 1 of 4)	intron (NM_010058, intron 1 of 4)	1096.0	NM_010058	13401.0	Mm.2852	NM_010058	ENSMUSG00000030410	Dmwd	DMR-N9|Dm9	dystrophia myotonica-containing WD repeat motif	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71190758-4	chr17	71190557	71190757	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022882, intron 1 of 19)	intron (NM_022882, intron 1 of 19)	6679.0	NM_022882	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	1.05980591773975	1.56316685373632	1.18328304953518	0.520177350198211	0.507467359443118	0.542870812931888	0.531541478159883	1.1459491948436	-1.98907441302487	0.240025796952131	0.736540734959326
Merged-chr11-115005296-4	chr11	115005190	115005390	+	907.258301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-3410.0	NM_134158	140497.0	Mm.2699	NM_134158	ENSMUSG00000044811	Cd300c2	CLM4|Cd300c|Cd300d|DIgR1|Igsf7|Lmir2|MAIR-II	CD300C molecule 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-95595637-2	chr11	95595517	95595717	+	993.599976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7919.0	NM_033217	18053.0	Mm.283893	NM_033217	ENSMUSG00000000120	Ngfr	LNGFR|Tnfrsf16|p75|p75NGFR|p75NTR	nerve growth factor receptor (TNFR superfamily, member 16)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-136814464-2	chr6	136814364	136814564	+	673.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_021714, exon 12 of 12)	exon (NM_021714, exon 12 of 12)	6216.0	NM_177688	232440.0	Mm.154564	NM_177688	ENSMUSG00000060032	H2afj	E130307C13	H2A histone family, member J	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-90265110-4	chr3	90265018	90265218	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356483)	promoter-TSS (NM_001356483)	-117.0	NM_001356483	229541.0	Mm.30571	NM_201407	ENSMUSG00000042404	Dennd4b	-	DENN/MADD domain containing 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-25959523-1	chr15	25959423	25959623	+	556.0	f0_balb.idr	intron (NM_001277317, intron 1 of 6)	intron (NM_001277317, intron 1 of 6)	11296.0	NR_106071	102465698.0		NR_106071	ENSMUSG00000098719	Mir7212	Gm28027|mmu-mir-7212	microRNA 7212	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-70388990-1	chr9	70388890	70389090	+	590.0	f0_balb.idr	intron (NM_181072, intron 26 of 27)	intron (NM_181072, intron 26 of 27)	16763.0	NR_049200	100885839.0		NR_049200	ENSMUSG00000093763	Mir5626	Gm25590|mir-5626|mmu-mir-5626	microRNA 5626	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-65527809-1	chr3	65527709	65527909	+	1000.0	f0_balb.idr	promoter-TSS (NM_178892)	promoter-TSS (NM_178892)	-638.0	NM_178892	99929.0	Mm.246398	NM_178892	ENSMUSG00000034640	Tiparp	ARTD14|AW558171|PARP7	TCDD-inducible poly(ADP-ribose) polymerase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-146753166-2	chr5	146753066	146753266	+	661.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011669, intron 4 of 8)	intron (NM_011669, intron 4 of 8)	41790.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-21931208-3	chr4	21931191	21931391	+	607.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175234)	promoter-TSS (NM_175234)	-35.0	NM_175234	76132.0	Mm.159689	NM_175234	ENSMUSG00000028246	Faxc	6230409E13Rik|AW742931	failed axon connections homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-3655855-2	chr2	3655755	3655955	+	879.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-57603.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-95298620-4	chr10	95298494	95298694	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001330138, intron 2 of 2)	intron (NM_001330138, intron 2 of 2)	25115.0	NM_001330138	12905.0	Mm.473739	NM_009950	ENSMUSG00000045867	Cradd	RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171391193-2	chr1	171391098	171391298	+	621.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001005508, intron 1 of 11)	intron (NM_001005508, intron 1 of 11)	2238.0	NM_001005508	226652.0	Mm.251048	NM_001005508	ENSMUSG00000048865	Arhgap30	6030405P05Rik|Gm102|mFLJ00267	Rho GTPase activating protein 30	protein-coding	-0.0977016715383615	-0.00399608531927825	-0.330966865275282	-0.333626488413278	-0.0917596259492191	0.00282314113223398	-0.330203791666453	-0.333162944106642	0.040353244391314	0.986363013599206	1
Merged-chr8-75031571-4	chr8	75031458	75031658	+	912.883301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001316753, exon 12 of 12)	3' UTR (NM_001316753, exon 12 of 12)	-2128.0	NM_001136259	21968.0	Mm.1967	NM_011622	ENSMUSG00000042870	Tom1	-	target of myb1 trafficking protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-73371719-4	chr2	73371623	73371823	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276444, intron 4 of 15)	intron (NM_001276444, intron 4 of 15)	14757.0	NM_001276443	68526.0	Mm.451014	NM_001080707	ENSMUSG00000041762	Gpr155	1110017O10Rik|DEPDC3|F730029F15Rik|PGR22	G protein-coupled receptor 155	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135973837-4	chr4	135973710	135973910	+	959.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1216.0	NM_011942	26394.0	Mm.34302	NM_011942	ENSMUSG00000028670	Lypla2	LysoII	lysophospholipase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-123750975-4	chr4	123750858	123751058	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023423)	promoter-TSS (NM_023423)	-659.0	NM_023423	68050.0	Mm.27903	NM_023423	ENSMUSG00000023075	Akirin1	6330407G11Rik	akirin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-23496680-2	chr11	23496580	23496780	+	623.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_172391, intron 2 of 8)	intron (NM_172391, intron 2 of 8)	1359.0	NM_001290655	268390.0	Mm.13148	NM_172391	ENSMUSG00000020288	Ahsa2	-	AHA1, activator of heat shock protein ATPase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-76442853-4	chr10	76442757	76442957	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001282992)	promoter-TSS (NM_001282992)	55.0	NM_008787	18541.0	Mm.251794	NM_008787	ENSMUSG00000001151	Pcnt	AW476095|C86676|KEN|Pcnt2|kendrin|m239Asp|m275Asp	pericentrin (kendrin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-41550733-4	chr13	41550631	41550831	+	844.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT2B3|LTR|ERVL	-55485.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-85687597-2	chr1	85687490	85687690	+	843.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_013673, intron 11 of 19)	intron (NM_013673, intron 11 of 19)	37602.0	NM_001313714	20684.0	Mm.290906	NM_013673	ENSMUSG00000026222	Sp100	A430075G10Rik	nuclear antigen Sp100	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-33035938-3	chr12	33035833	33036033	+	799.138916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024478, intron 18 of 19)	intron (NM_001024478, intron 18 of 19)	56942.0	NM_001024478	68764.0	Mm.60083	NM_001024478	ENSMUSG00000035860	Cdhr3	1110049B09Rik|BB172694|Cdh28	cadherin-related family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-91190267-3	chr15	91190198	91190398	+	793.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011994, intron 1 of 9)	intron (NM_011994, intron 1 of 9)	1709.0	NM_011994	26874.0	Mm.295456	NM_011994	ENSMUSG00000055782	Abcd2	ABC39|ALDL1|ALDR|ALDRP	ATP-binding cassette, sub-family D (ALD), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-80659994-1	chr1	80659894	80660094	+	597.0	f0_balb.idr	intron (NM_175291, intron 1 of 55)	intron (NM_175291, intron 1 of 55)	5358.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-6909813-4	chr15	6909765	6909965	+	937.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35552.0	NM_001310469	18414.0	Mm.10760	NM_011019	ENSMUSG00000022146	Osmr	OSMRB	oncostatin M receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-119834656-2	chr8	119834556	119834756	+	653.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028071, intron 2 of 3)	intron (NM_028071, intron 2 of 3)	5923.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165921948-2	chr2	165921848	165922048	+	854.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-37110.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	-1.84354474832578	-1.81325489144778	-1.53416061964661	-1.82993901100912	-1.8414184563789	-1.81126990231468	-1.82034119297928	-1.82859217979378	-1.52252619601533	0.665276690233728	1
Merged-chr5-113703549-3	chr5	113703449	113703649	+	957.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033216, intron 2 of 2)	intron (NR_033216, intron 2 of 2)	21223.0	NR_033216	381707.0	Mm.159016	NR_033216	ENSMUSG00000042184	1700069L16Rik	1700096P12Rik	RIKEN cDNA 1700069L16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-105674007-4	chr2	105673930	105674130	+	940.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001244198, intron 1 of 12)	intron (NM_001244198, intron 1 of 12)	-1714.0	NM_001244200	18508.0	Mm.3608	NM_013627	ENSMUSG00000027168	Pax6	1500038E17Rik|AEY11|Dey|Gsfaey11|Pax-6|Sey	paired box 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-120730879-3	chr2	120730813	120731013	+	888.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026891, exon 2 of 28)	exon (NM_026891, exon 2 of 28)	604.0	NM_026891	68968.0	Mm.2289	NM_026891	ENSMUSG00000027284	Cdan1	1500015A01Rik|AI448026|AW492297|CDA-I|CDA1|CDAI	congenital dyserythropoietic anemia, type I (human)	protein-coding	2.72078856310885	3.24059003653813	1.88873001319572	2.7649199758321	3.20355108543309	3.07321125678421	3.24112088336222	2.88187245376594	0.668425027217435	0.331862322318069	0.832887019212082
Merged-chr1-172555586-1	chr1	172555486	172555686	+	608.0	f1_c57bl6.idr	promoter-TSS (NM_177723)	promoter-TSS (NM_177723)	-352.0	NM_177723	240916.0	Mm.71940	NM_177723	ENSMUSG00000049598	Vsig8	A030011M19|EG240916	V-set and immunoglobulin domain containing 8	protein-coding	0.739659784873676	0.691678776287976	0.381039371728757	0.364337820112033	0.200067779347958	0.217895122591862	0.658948228126534	0.207128597131815	-1.58358034476284	0.404108606130383	1
Merged-chr11-68893819-1	chr11	68893719	68893919	+	643.0	f1_c57bl6.idr	3' UTR (NM_177060, exon 3 of 3)	3' UTR (NM_177060, exon 3 of 3)	5266.0	NM_177060	320040.0	Mm.305696	NM_177060	ENSMUSG00000046490	Rnf222	9930039A11Rik	ring finger protein 222	protein-coding	0.765239399321509	2.01656470304655	1.74716189355598	1.1825073780626	0.768758845864715	1.44614910217846	0.805953839240642	1.59308521193376	-1.05850921147789	0.452622877862332	0.91869698872066
Merged-chr17-86802938-3	chr17	86802839	86803039	+	788.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010137, intron 2 of 15)	intron (NM_010137, intron 2 of 15)	49075.0	NM_010137	13819.0	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	2.02157424873187	2.97461653009752	1.85211751235287	1.98017736108253	2.66519623905654	3.42870449531537	1.64120939261824	2.28767871982271	0.764258022377263	0.385269192151853	0.876154616828737
Merged-chr7-100931681-5	chr7	100931602	100931802	+	731.866699	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081116, exon 1 of 21)	exon (NM_001081116, exon 1 of 21)	459.0	NM_001081116	207212.0	Mm.29954	NM_001081116	ENSMUSG00000032875	Arhgef17	8030463K16|AI428794|AW558066|BC035332|mKIAA0337	Rho guanine nucleotide exchange factor (GEF) 17	protein-coding	1.11375627571801	1.63471369829194	1.34030782697759	1.61716383187077	1.24443692082788	0.855354269016155	1.2088209728558	1.01760984454856	-1.50495503631637	0.240399019084294	0.736569477638593
Merged-chr5-101968675-4	chr5	101968580	101968780	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 5 of 66)	intron (NM_172882, intron 5 of 66)	101241.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	7.14752092634845	7.01105060913787	6.60175997737821	7.4210348160598	7.03533877341079	7.31231110955699	6.37459569977358	6.86907587138267	-0.149945026587193	0.491903343531029	0.934850158278556
Merged-chr15-79680795-1	chr15	79680695	79680895	+	920.0	f1_balb.idr	intron (NM_028792, intron 1 of 3)	intron (NM_028792, intron 1 of 3)	7077.0	NM_028792	74158.0	Mm.323393	NM_028792	ENSMUSG00000022426	Josd1	1300006C06Rik|mKIAA0063	Josephin domain containing 1	protein-coding	-1.50561175621786	-1.47331375025452	-1.02203377115094	-1.49110398925286	-1.50334449591826	-1.47119716082604	-1.48086985756939	-1.48966786617048	-2.07776723614574	0.550394407909386	1
Merged-chr5-66322292-2	chr5	66322192	66322392	+	569.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310626, intron 10 of 15)	intron (NM_001310626, intron 10 of 15)	15373.0	NM_001201416	11787.0	Mm.5159	NM_009686	ENSMUSG00000029207	Apbb2	2310007D03Rik|FE65L1|Rirl1|TR2L|Zfra	amyloid beta (A4) precursor protein-binding, family B, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70598506-4	chr8	70598410	70598610	+	883.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133772, intron 14 of 16)	CpG	4029.0	NM_023627	71780.0	Mm.29357	NM_023627	ENSMUSG00000019139	Isyna1	1300017C10Rik|AU018670	myo-inositol 1-phosphate synthase A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-61244296-3	chr3	61244138	61244338	+	647.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-120269.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47783691-2	chr17	47783591	47783791	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161723, intron 1 of 8)	intron (NM_001161723, intron 1 of 8)	-2053.0	NM_011549	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-97480922-4	chr7	97480812	97481012	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027256)	promoter-TSS (NM_027256)	-44.0	NM_027256	101861.0	Mm.27383	NM_027256	ENSMUSG00000025133	Ints4	2610034N24Rik|AA692684|AW493223	integrator complex subunit 4	protein-coding	4.56614302353115	4.42864757300452	5.15597594486071	3.89517654422954	4.93276522490157	4.63556597229837	4.54371940701725	5.258683311014	0.35924654739391	0.355984694728851	0.853664850644233
Merged-chr1-60658573-3	chr1	60658430	60658630	+	890.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-87858.0	NM_007642	12487.0	Mm.255003	NM_007642	ENSMUSG00000026012	Cd28	-	CD28 antigen	protein-coding	1.22248250096527	1.97900302236362	1.64867226942996	1.73496406949961	1.76899191244513	2.30781005106363	1.66156019586791	1.06118920956643	0.32419258851371	0.772459186343096	0.998431161219273
Merged-chr19-5570917-2	chr19	5570817	5571017	+	684.666626	f1_balb.idr|f1_c57bl6.idr	exon (NM_001033448, exon 2 of 2)	exon (NM_001033448, exon 2 of 2)	2893.0	NM_001033448	381201.0	Mm.441906	NM_001033448	ENSMUSG00000049562	Ap5b1	Gm962|beta-5	adaptor-related protein complex 5, beta 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70869670-4	chr8	70869586	70869786	+	983.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026964, intron 2 of 4)	intron (NM_026964, intron 2 of 4)	3804.0	NM_026964	234388.0	Mm.295791	NM_026964	ENSMUSG00000007721	Ccdc124	1810023B24Rik	coiled-coil domain containing 124	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-108857095-2	chr9	108856995	108857195	+	611.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_134420, exon 6 of 18)	exon (NM_134420, exon 6 of 18)	3052.0	NM_134420	171429.0	Mm.45201	NM_134420	ENSMUSG00000023259	Slc26a6	B930010B04Rik|CFEX|Pat-1|Pat1	solute carrier family 26, member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-46916185-2	chr14	46916101	46916301	+	717.966675	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037221, intron 2 of 12)	intron (NM_001037221, intron 2 of 12)	33236.0	NM_001037221	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	1.40026023956521	0.802613610877558	1.5371081230974	1.2615452618656	1.41345480427311	0.805450483317476	0.792733945691035	1.5924409642182	-0.269991405636224	0.851408815858188	0.998431161219273
Merged-chr8-71470598-2	chr8	71470498	71470698	+	986.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001294259, intron 1 of 3)	intron (NM_001294259, intron 1 of 3)	1404.0	NR_122114	66498.0	Mm.260360	NM_025600	ENSMUSG00000074247	Dda1	1500034J01Rik|1700095J19Rik|R74921	DET1 and DDB1 associated 1	protein-coding	-0.654884096477252	-0.71398425875234	-0.899749082837602	-0.90170543576632	-0.544466060674695	-0.890224666387592	-0.899188185885918	-0.901364309040085	-0.140007874725338	0.961898308992435	1
Merged-chr3-96216428-2	chr3	96216296	96216496	+	776.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17A2|LTR|ERVK	-3520.0	NM_178213	621893.0		NM_178213	ENSMUSG00000063689	Hist2h2ab	EG621893|H2a-613a	histone cluster 2, H2ab	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-97174365-4	chr7	97174262	97174462	+	826.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162477, intron 1 of 9)	L1MA4A|LINE|L1	92611.0	NM_010248	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	2.25872699859754	3.01280330489427	1.86330352195216	2.26433731364024	2.47180872563022	2.95436337430242	1.66551919019748	2.14415526563482	-0.0532944539892462	0.951016372302009	0.998431161219273
Merged-chr1-138517166-3	chr1	138517077	138517277	+	821.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021605, intron 5 of 9)	ID_B1|SINE|B4	102580.0	NM_021605	59125.0	Mm.143817	NM_021605	ENSMUSG00000026393	Nek7	2810460C19Rik|AU020186	NIMA (never in mitosis gene a)-related expressed kinase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-68472668-4	chr11	68472585	68472785	+	885.2708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177320, intron 1 of 18)	intron (NM_177320, intron 1 of 18)	-30334.0	NM_001004435	104709.0	Mm.234573	NM_001004435	ENSMUSG00000046207	Pik3r6	BB220380|p84|p84 PIKAP|p87(PIKAP)|p87PIKAP	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98753665-2	chr11	98753565	98753765	+	659.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178060, intron 2 of 8)	intron (NM_178060, intron 2 of 8)	11880.0	NM_001313983	21833.0	Mm.265917	NM_178060	ENSMUSG00000058756	Thra	6430529J03Rik|AW259572|Erba|Nr1a1|Rvr|T3R[a]|T3Ralpha|Thra1|Thra2|c-erbA-1|c-erbA-alpha|c-erbAalpha	thyroid hormone receptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-164913664-4	chr2	164913567	164913767	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1917.0	NM_199027	329559.0	Mm.330776	NM_199027	ENSMUSG00000039834	Zfp335	1810045J01Rik|NIF-1|Nif1|Znf335	zinc finger protein 335	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-32144860-2	chr16	32144760	32144960	+	816.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001347182, exon 2 of 2)	exon (NM_001347182, exon 2 of 2)	20734.0	NM_146069	224109.0	Mm.33498	NM_146069	ENSMUSG00000052384	Nrros	E430025L02Rik|Lrcc33|Lrrc33	negative regulator of reactive oxygen species	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-123914794-4	chr4	123914704	123914904	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2629.0	NM_017475	54170.0	Mm.220922	NM_017475	ENSMUSG00000028646	Rragc	AU041672|Gtr2|RAGC|TIB929|YGR163W	Ras-related GTP binding C	protein-coding	1.19560596204403	0.714919951976331	1.3137968480613	0.695863991079335	1.30224407511022	0.717320891652674	1.32605288824135	1.27797096168307	0.731156735670309	0.627235761810414	0.980912176761026
Merged-chr16-11418471-4	chr16	11418364	11418564	+	961.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028964, intron 9 of 20)	intron (NM_028964, intron 9 of 20)	12816.0	NM_001290148	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-74310225-3	chr4	74310113	74310313	+	766.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356561, intron 5 of 20)	intron (NM_001356561, intron 5 of 20)	58334.0	NM_001356561	76804.0	Mm.209059	NM_144787	ENSMUSG00000028397	Kdm4c	2410141F18Rik|AA517467|Gasc1|Jmjd2c	lysine (K)-specific demethylase 4C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80017028-3	chr10	80016936	80017136	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001347074, exon 1 of 23)	exon (NM_001347074, exon 1 of 23)	121.0	NM_001347074	70719.0	Mm.243954	NM_027521	ENSMUSG00000035697	Arhgap45	6330406L22Rik|AW539505|Ha-1|Hmha1	Rho GTPase activating protein 45	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-121642825-2	chr8	121642725	121642925	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_080855, intron 1 of 12)	intron (NM_080855, intron 1 of 12)	9108.0	NM_080855	142682.0	Mm.103202	NM_080855	ENSMUSG00000061410	Zcchc14	AA792890|BDG29	zinc finger, CCHC domain containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-59994872-2	chr1	59994772	59994972	+	587.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357296, intron 10 of 10)	intron (NM_001357296, intron 10 of 10)	48250.0	NM_001357296	70375.0	Mm.17834	NM_027407	ENSMUSG00000026018	Ica1l	1700030B17Rik|Als2cr15|b2b3465Clo	islet cell autoantigen 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-21510254-1	chr19	21510154	21510354	+	557.0	f0_balb.idr	Intergenic	LTR16E1|LTR|ERVL	-37593.0	NM_010266	14544.0	Mm.45054	NM_010266	ENSMUSG00000058624	Gda	AU015411|AW047581|GAH	guanine deaminase	protein-coding	1.06953935265504	0.558717523249988	0.552050132616707	0.949390599296907	0.900848533011924	0.743269846437959	1.27289526493899	0.547830874586396	0.538882064726486	0.744847662947399	1
Merged-chr5-46440141-2	chr5	46440041	46440241	+	649.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-507732.0	NR_110478	78106.0	Mm.243807	NR_110478	ENSMUSG00000106602	4930405L22Rik	-	RIKEN cDNA 4930405L22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-23104096-4	chr16	23104004	23104204	+	990.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-3364.0	NR_152586	13682.0	Mm.260084	NM_013506	ENSMUSG00000022884	Eif4a2	4833432N07Rik|BM-010|Ddx2b|Eif4|eIF-4A-II|eIF4A-II	eukaryotic translation initiation factor 4A2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-7282318-2	chr7	7282189	7282389	+	858.75	f0_balb.idr|f1_balb.idr	TTS (NM_001302386)	TTS (NM_001302386)	-4000.0	NR_003555	76229.0	Mm.387947	NM_001113468	ENSMUSG00000095730	Vmn2r29	6430701C03Rik	vomeronasal 2, receptor 29	protein-coding	2.90544074196361	1.41269821379361	2.73386122349082	2.83579517183006	3.57551616815263	1.42243044342718	2.08681458988342	2.44924441569272	0.113129520393819	0.905504118180556	0.998431161219273
Merged-chr5-124540680-4	chr5	124540568	124540768	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019770)	promoter-TSS (NM_019770)	-123.0	NM_019770	56334.0	Mm.325307	NM_019770	ENSMUSG00000029390	Tmed2	1110032D12Rik|1810020N21Rik|Rnp24|Sid394|p24beta1	transmembrane p24 trafficking protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-158162440-2	chr2	158162340	158162540	+	700.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16048.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-55911571-4	chr7	55911460	55911660	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011370, intron 22 of 30)	intron (NM_011370, intron 22 of 30)	50933.0	NM_001256133	93790.0	Mm.37249	NM_023647	ENSMUSG00000030452	Nipa2	2600017P10Rik|3830408P04Rik|AB041581	non imprinted in Prader-Willi/Angelman syndrome 2 homolog (human)	protein-coding	6.71451598111716	6.54992078947751	6.90352569216211	6.49193285542961	6.38200273053526	6.46728731141864	6.49736407078576	6.31251184766798	-0.279160865486571	0.149401506224342	0.601010520370428
Merged-chr2-16491545-4	chr2	16491425	16491625	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026162, intron 1 of 13)	intron (NM_026162, intron 1 of 13)	135221.0	NM_026162	67448.0	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-21768690-4	chr5	21768610	21768810	+	995.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009584, exon 8 of 17)	exon (NM_009584, exon 8 of 17)	16455.0	NM_009584	22791.0	Mm.266312	NM_009584	ENSMUSG00000029014	Dnajc2	AU020218|MIDA1|Zrf1|Zrf2	DnaJ heat shock protein family (Hsp40) member C2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89512512-2	chr3	89512412	89512612	+	866.1666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7652.0	NM_080466	140493.0	Mm.120250	NM_080466	ENSMUSG00000000794	Kcnn3	KCa2.3|SK3|SKCA3	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-142529798-2	chr3	142529698	142529898	+	612.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001083312)	promoter-TSS (NM_001083312)	-538.0	NM_001083312	229900.0	Mm.45740	NM_145545	ENSMUSG00000040253	Gbp7	9830147J24Rik	guanylate binding protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-98898198-4	chr10	98898078	98898278	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16464.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-47224813-3	chr13	47224730	47224930	+	802.288879	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146042, intron 3 of 7)	intron (NM_146042, intron 3 of 7)	30827.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171327495-1	chr1	171327395	171327595	+	546.0	f1_c57bl6.idr	Intergenic	Intergenic	-1313.0	NM_001357550	21945.0	Mm.270139	NM_011615	ENSMUSG00000013973	Dedd	CASP8IP1|DEFT|Dedpro1|FLDED1|KE05	death effector domain-containing	protein-coding	0.0879044469997002	0.618305184343399	0.861179743053447	-0.0649808221918253	-0.0723169661549809	-0.051718196335637	-0.0583646784993111	-0.0640787047442286	-4.11014544903689	0.0578688465840672	1
Merged-chr19-17337224-4	chr19	17337124	17337324	+	794.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010265, intron 1 of 2)	intron (NM_010265, intron 1 of 2)	2281.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	3.5841935490203	2.85187775930265	3.32579957660414	3.30682187369496	2.85967485469741	2.41695051993114	2.14373654622884	3.00414270785641	-1.13948427927638	0.0863449666096039	0.451721767239936
Merged-chr5-135575667-3	chr5	135575564	135575764	+	966.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2615.0	NM_001356630	56221.0	Mm.31505	NM_019577	ENSMUSG00000004814	Ccl24	CKb-6|MPIF-2|Scya24	chemokine (C-C motif) ligand 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119272849-1	chr11	119272749	119272949	+	699.0	f1_balb.idr	intron (NM_008064, intron 2 of 19)	intron (NM_008064, intron 2 of 19)	4886.0	NM_008064	14387.0	Mm.4793	NM_008064	ENSMUSG00000025579	Gaa	E430018M07Rik	glucosidase, alpha, acid	protein-coding	-0.0231855315067049	0.200463695207515	-0.0104713607554904	0.434368006200309	-0.0219997123029356	0.864920974530845	0.182657843697156	-0.0144023176547227	1.04141844063879	0.619461897119338	1
Merged-chr1-134094474-4	chr1	134094358	134094558	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-15303.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-62219415-2	chr15	62219291	62219491	+	812.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_003523)	promoter-TSS (NR_003523)	60.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95627672-1	chr3	95627572	95627772	+	658.0	f1_c57bl6.idr	intron (NM_001026212, intron 2 of 2)	intron (NM_001026212, intron 2 of 2)	2692.0	NM_001026212	56205.0	Mm.241365	NM_019561	ENSMUSG00000038619	Ensa	1700020C18Rik|2610007F17Rik|AI451924	endosulfine alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99186479-2	chr7	99186379	99186579	+	810.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	-3766.0	NM_026384	67800.0	Mm.180189	NM_026384	ENSMUSG00000030747	Dgat2	0610010B06Rik|ARAT|DGAT-2	diacylglycerol O-acyltransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-31501425-2	chr12	31501316	31501516	+	641.5	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-1800.0	NM_001253848	104836.0	Mm.273270	NM_134048	ENSMUSG00000020659	Cbll1	AI467391|Hakai|c-Cbl-like	Casitas B-lineage lymphoma-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-41299597-3	chr8	41299494	41299694	+	801.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023662, intron 22 of 37)	intron (NM_023662, intron 22 of 37)	59835.0	NM_023662	18536.0	Mm.117896	NM_023662	ENSMUSG00000031592	Pcm1	2600002H09Rik|9430077F19Rik|C030044G17Rik	pericentriolar material 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-58857097-4	chr1	58857030	58857230	+	869.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54628.0	NM_001277926	12370.0	Mm.336851	NM_009812	ENSMUSG00000026029	Casp8	CASP-8|FLICE|MACH|Mch5	caspase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-67160233-2	chr16	67160133	67160333	+	559.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178721, intron 1 of 9)	intron (NM_178721, intron 1 of 9)	460675.0	NM_001347247	239857.0	Mm.394300	NM_178721	ENSMUSG00000064115	Cadm2	2900078E11Rik|9330131D06|A830029E02Rik|Igdf4d|Igsf4d|NECL3|SynCAM 2|SynCAM2	cell adhesion molecule 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-59381819-3	chr10	59381716	59381916	+	971.822205	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPLTR1_Mm|LTR|ERVK	-21869.0	NM_023530	69836.0	Mm.30268	NM_023530	ENSMUSG00000009646	Pla2g12b	2010002E04Rik|Fksg71|Pla2g13|hlb218	phospholipase A2, group XIIB	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141676670-4	chr4	141676519	141676719	+	995.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J1|LTR|ERVL-MaLR	9097.0	NM_023544	69994.0	Mm.441022	NM_023544	ENSMUSG00000040715	Rsc1a1	1700027M01Rik|Rs1	regulatory solute carrier protein, family 1, member 1	protein-coding	3.52816934302685	3.51972546889907	4.19670112663298	3.85338204516928	3.48558366639807	3.54624625417861	4.71206189199098	3.87255834208421	0.28066891053876	0.5820232889618	0.966599221005409
Merged-chr10-39261734-1	chr10	39261634	39261834	+	888.0	f0_balb.idr	Intergenic	Intergenic	-97940.0	NM_001127376	327743.0	Mm.208111	NM_001127376	ENSMUSG00000062074	Wisp3	CCN6|Gm735|WISP-3	WNT1 inducible signaling pathway protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-128735156-2	chr8	128735056	128735256	+	752.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER5B|DNA|hAT-Charlie	49502.0	NM_010578	16412.0	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-86200446-2	chr15	86200346	86200546	+	787.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-14013.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-46929131-2	chr13	46929031	46929231	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010617, intron 2 of 37)	intron (NM_010617, intron 2 of 37)	587.0	NM_010617	16553.0	Mm.342703	NM_010617	ENSMUSG00000021375	Kif13a	4930505I07Rik|mKIAA4109	kinesin family member 13A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-172321573-3	chr1	172321472	172321672	+	997.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008429, exon 4 of 4)	3' UTR (NM_008429, exon 4 of 4)	7750.0	NM_008429	16524.0	Mm.261168	NM_008429	ENSMUSG00000038026	Kcnj9	1700085N21Rik|Girk3|Kir3.3|mbGIRK3	potassium inwardly-rectifying channel, subfamily J, member 9	protein-coding	3.0948751338365	3.87340189920476	3.87539158536521	2.55971540805184	3.20587074056548	3.75671387031235	3.9625902726877	2.97812794868828	0.113413166577684	0.849791337257699	0.998431161219273
Merged-chr1-171559012-4	chr1	171558895	171559095	+	960.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018729)	promoter-TSS (NM_018729)	-198.0	NM_018729	18106.0	Mm.2299	NM_018729	ENSMUSG00000004709	Cd244	2B4|C9.1|F730046O15Rik|Ly90|NAIL|NKR2B4|Nmrk|SLAMF4	CD244 natural killer cell receptor 2B4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-24956164-6	chr6	24956089	24956289	+	886.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177013)	promoter-TSS (NM_177013)	-64.0	NM_177013	319832.0	Mm.127446	NM_177013	ENSMUSG00000048022	Tmem229a	6332401O19Rik	transmembrane protein 229A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-15940729-2	chr7	15940629	15940829	+	835.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133831, intron 5 of 12)	B1_Mur4|SINE|Alu	-1869.0	NR_028539	100217441.0		NR_028539	ENSMUSG00000080478	Snord23	MBII-115	small nucleolar RNA, C/D box 23	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101589537-3	chr11	101589409	101589609	+	864.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359325, intron 6 of 7)	intron (NM_001359325, intron 6 of 7)	7210.0	NM_001359325	217203.0	Mm.280559	NM_144830	ENSMUSG00000034947	Tmem106a	0610008L10Rik|AI043106|BC022145	transmembrane protein 106A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-149456266-2	chr5	149456166	149456366	+	874.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029464, intron 3 of 6)	MTEa|LTR|ERVL-MaLR	16606.0	NM_001310765	75860.0	Mm.159605	NM_029464	ENSMUSG00000029660	Tex26	4930588N13Rik	testis expressed 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-59485873-4	chr9	59485763	59485963	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019927, intron 1 of 13)	CpG	511.0	NM_019927	23806.0	Mm.305925	NM_019927	ENSMUSG00000025234	Arih1	AU021774|Ari|Ari1|Hari|Hhari|Ubch7bp|Uip77	ariadne RBR E3 ubiquitin protein ligase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-79024006-2	chr11	79023906	79024106	+	774.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045873, intron 1 of 5)	intron (NR_045873, intron 1 of 5)	409.0	NR_045873	790910.0	Mm.440410	NR_045873		Gm11201	-	predicted gene 11201	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119863623-4	chr11	119863510	119863710	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028898, intron 20 of 33)	intron (NM_028898, intron 20 of 33)	-18679.0	NR_039557	100628577.0		NR_039557	ENSMUSG00000093061	Mir5098	mmu-mir-5098|mu-mir-5098	microRNA 5098	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-71143365-1	chr14	71143265	71143465	+	648.0	f1_balb.idr	Intergenic	L1MD1|LINE|L1	-107908.0	NR_046075	100043132.0	Mm.399336	NR_046075	ENSMUSG00000115139	Gm4251	-	predicted gene 4251	ncRNA	0.151586071205254	-0.236542845788148	-0.0903872640088973	-0.242064454182075	-0.245401520264127	0.072636652737807	-0.23898741790721	0.0192509960791578	0.00538975878845396	0.998149748305391	1
Merged-chr1-138972645-4	chr1	138972505	138972705	+	948.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181347, intron 1 of 20)	intron (NM_181347, intron 1 of 20)	4884.0	NM_181347	329260.0	Mm.337604	NM_181347	ENSMUSG00000056268	Dennd1b	4632404N19Rik|4930467M19Rik|6820401H01Rik|F730008N07Rik	DENN/MADD domain containing 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-55673429-3	chr3	55673314	55673514	+	627.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030595, intron 48 of 57)	intron (NM_030595, intron 48 of 57)	-109096.0	NM_010750	17116.0	Mm.440209	NM_010750	ENSMUSG00000056947	Mab21l1	AW047968	mab-21-like 1 (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83040522-2	chr11	83040422	83040622	+	669.833374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_073523)	promoter-TSS (NR_073523)	10.0	NM_001355513	237887.0	Mm.341645	NM_181542	ENSMUSG00000072621	Slfn10-ps	Slfn10|mFLJ00257	schlafen 10, pseudogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-77652064-2	chr9	77651964	77652164	+	664.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172925, intron 2 of 2)	L1MA5A|LINE|L1	15332.0	NM_172925	244923.0	Mm.138238	NM_172925	ENSMUSG00000044938	Klhl31	9830147P19Rik|D930047P17Rik|Kbtbd1	kelch-like 31	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127178943-2	chr10	127178843	127179043	+	652.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177615, intron 2 of 16)	intron (NM_177615, intron 2 of 16)	1702.0	NM_177615	216441.0	Mm.248373	NM_177615	ENSMUSG00000040441	Slc26a10	C78409|D630010I07	solute carrier family 26, member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3833487-2	chr4	3833387	3833587	+	672.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_026147, exon 4 of 4)	3' UTR (NM_026147, exon 4 of 4)	2168.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-164815543-4	chr2	164815448	164815648	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178375, intron 1 of 1)	intron (NM_178375, intron 1 of 1)	-7138.0	NM_028028	71971.0	Mm.161149	NM_028028	ENSMUSG00000017764	Zswim1	2410003H12Rik|AI850991|BB046916	zinc finger SWIM-type containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120070680-1	chr11	120070580	120070780	+	550.0	f1_balb.idr	intron (NM_009734, intron 14 of 25)	intron (NM_009734, intron 14 of 25)	16147.0	NM_009734	12009.0	Mm.2556	NM_009734	ENSMUSG00000039781	Cep131	AZ1|Azi|Azi1	centrosomal protein 131	protein-coding	-0.33960431090387	-0.605803199812473	-0.609699001720728	-0.612708609340272	0.20540121388823	-0.604925814857733	-0.608839265788537	-0.612182593635148	1.85767266795997	0.512731886048049	1
Merged-chr13-20114461-3	chr13	20114341	20114541	+	861.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	23934.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	-1.05484060082825	-1.170956480612	-1.01705889256348	-1.18998070318907	-1.19497864740585	-1.16869307828247	-0.861542784270522	-1.1884449663634	0.200015786606457	0.948920107106087	1
Merged-chr9-66060122-4	chr9	66060005	66060205	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011149)	promoter-TSS (NM_011149)	-64.0	NM_011149	19035.0	Mm.335249	NM_011149	ENSMUSG00000032383	Ppib	AA408962|AA553318|AI844835|Cphn-2|Cphn2|CyP-20b	peptidylprolyl isomerase B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-47315641-4	chr4	47315516	47315716	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37606.0	NM_001312868	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-96395331-4	chr9	96395204	96395404	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30873.0	NM_001357212	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	6.29248667230359	5.8450124591015	6.17338660625403	6.05450490147872	5.82819266777759	5.62522195291554	6.13701998573927	5.37638118258164	-0.371296398119639	0.136349419200048	0.576434225356653
Merged-chr5-111362875-1	chr5	111362775	111362975	+	569.0	f1_balb.idr	intron (NM_001359216, intron 5 of 9)	intron (NM_001359216, intron 5 of 9)	32178.0	NM_001359216	56305.0	Mm.200516	NM_019640	ENSMUSG00000050017	Pitpnb	PI-TP-beta	phosphatidylinositol transfer protein, beta	protein-coding	0.215972320456129	0.240038091199309	0.232221457246199	0.558547107215993	1.14603384308206	0.912160949647593	0.233950887261413	0.410260762383824	2.72935627564159	0.163991822865171	1
Merged-chr5-92352428-2	chr5	92352328	92352528	+	785.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310664, intron 2 of 10)	RLTR13D2|LTR|ERVK	-3539.0	NM_021274	15945.0	Mm.877	NM_021274	ENSMUSG00000034855	Cxcl10	C7|CRG-2|INP10|IP-10|IP10|Ifi10|Scyb10|gIP-10|mob-1	chemokine (C-X-C motif) ligand 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-40865915-2	chr11	40865815	40866015	+	673.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-110629.0	NM_009831	12450.0	Mm.2103	NM_009831	ENSMUSG00000020326	Ccng1	AI314029	cyclin G1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-55420575-2	chr13	55420475	55420675	+	910.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_021489, intron 10 of 13)	intron (NM_021489, intron 10 of 13)	-5343.0	NM_029303	75477.0	Mm.432537	NM_029303	ENSMUSG00000044444	Pfn3	1700012P12Rik	profilin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-86129975-3	chr3	86129862	86130062	+	883.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001082414, exon 15 of 15)	3' UTR (NM_001082414, exon 15 of 15)	8896.0	NR_004417	19870.0		NR_004417	ENSMUSG00000064984	Snord73a	Rnu73a|U73a	small nucleolar RNA, C/D box U73A	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-138620215-4	chr1	138620124	138620324	+	921.366699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311148)	promoter-TSS (NM_001311148)	-467.0	NM_001311148	59125.0	Mm.143817	NM_021605	ENSMUSG00000026393	Nek7	2810460C19Rik|AU020186	NIMA (never in mitosis gene a)-related expressed kinase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-17002575-4	chr7	17002481	17002681	+	972.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7993.0	NM_001101535	434130.0	Mm.459162	NM_001101535	ENSMUSG00000041117	Ccdc8	-	coiled-coil domain containing 8	protein-coding	2.2451930387299	1.81727534493021	1.30478036180414	2.02385168854609	2.16579737359632	2.01351030129156	2.55537767308661	2.91606477984061	1.36066986059921	0.143422822599242	0.591443869750575
Merged-chr18-80195461-10	chr18	80195344	80195544	+	722.549988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199197, intron 3 of 5)	intron (NM_199197, intron 3 of 5)	5175.0	NM_199197	68731.0	Mm.186936	NM_199197	ENSMUSG00000024570	Rbfa	1110032A13Rik|AI595940	ribosome binding factor A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80075969-2	chr7	80075869	80076069	+	692.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045695)	promoter-TSS (NR_045695)	-712.0	NR_045695	100859962.0	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-97881858-2	chr13	97881761	97881961	+	567.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	130749.0	NR_152263	111365222.0	Mm.440079	NR_152263		Eyelinc18	-	uncharacterized EyeLinc18	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-10392302-3	chr14	10392211	10392411	+	603.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360141, intron 5 of 9)	Lx5|LINE|L1	61147.0	NM_001308286	14198.0	Mm.397619	NM_010210	ENSMUSG00000060579	Fhit	AW045638|Fra14A2	fragile histidine triad gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-50099084-4	chr11	50098981	50099181	+	866.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290750, intron 7 of 7)	intron (NM_001290750, intron 7 of 7)	29379.0	NR_029769	723845.0		NR_029769	ENSMUSG00000065417	Mir340	Mirn340|mir-340|mmu-mir-340	microRNA 340	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-69201143-4	chr17	69201045	69201245	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355736, intron 1 of 21)	intron (NM_001355736, intron 1 of 21)	41789.0	NM_001355735	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-45275509-4	chr9	45275355	45275555	+	868.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	BGLII_B2|LTR|ERVK	-6306.0	NM_001324486	16154.0	Mm.379327	NM_008348	ENSMUSG00000032089	Il10ra	AW553859|CDw210|CDw210a|IL-10R1|IL-10RA|Il10r|mIL-10R	interleukin 10 receptor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-46497713-4	chr4	46497616	46497816	+	952.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053179, intron 2 of 5)	intron (NM_053179, intron 2 of 5)	8387.0	NM_053179	94181.0	Mm.249349	NM_053179	ENSMUSG00000028334	Nans	4632418E04Rik|BB056474|Sas	N-acetylneuraminic acid synthase (sialic acid synthase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44989418-2	chr7	44989303	44989503	+	545.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_045266, intron 1 of 1)	ID_B1|SINE|B4	2503.0	NR_045266	100502630.0	Mm.490013	NR_045266	ENSMUSG00000087138	Gm15545	-	predicted gene 15545	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-195015138-1	chr1	195015038	195015238	+	679.0	f0_balb.idr	Intergenic	Intergenic	-2261.0	NR_015566	320977.0	Mm.99905	NR_015566	ENSMUSG00000096929	A330023F24Rik	C030002C11Rik	RIKEN cDNA A330023F24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102393823-2	chr12	102393723	102393923	+	569.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_011175)	TTS (NM_011175)	45990.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	-0.112010480025429	0.772463720442067	-0.0947555978602903	-0.101168630063685	-0.110381657355642	0.998517479052522	-0.092937899269969	-0.100042071644944	0.534934566533012	0.817111453172446	1
Merged-chr15-83035700-2	chr15	83035600	83035800	+	598.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2303.0	NM_001271411	74039.0	Mm.32584	NM_028728	ENSMUSG00000058099	Nfam1	4921501M20Rik|Cnaip	Nfat activating molecule with ITAM motif 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59717229-4	chr15	59717124	59717324	+	934.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	68570.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-82998403-2	chr15	82998303	82998503	+	655.875	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001271411, exon 6 of 6)	3' UTR (NM_001271411, exon 6 of 6)	24735.0	NM_028728	74039.0	Mm.32584	NM_028728	ENSMUSG00000058099	Nfam1	4921501M20Rik|Cnaip	Nfat activating molecule with ITAM motif 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-65931174-4	chr17	65931079	65931279	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023053, intron 3 of 4)	intron (NM_023053, intron 3 of 4)	20008.0	NM_023053	65960.0	Mm.10153	NM_023053	ENSMUSG00000024098	Twsg1	1810013J15Rik|9030422N06Rik|AW552143|D17Ertd403e|Tsg|Twg	twisted gastrulation BMP signaling modulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-86770024-4	chr17	86769848	86770048	+	893.68335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010137, intron 1 of 15)	intron (NM_010137, intron 1 of 15)	16084.0	NM_010137	13819.0	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-101698774-2	chr13	101698674	101698874	+	587.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077495, intron 7 of 15)	intron (NM_001077495, intron 7 of 15)	-6144.0	NM_001024955	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-64076028-1	chr7	64075928	64076128	+	702.0	f1_balb.idr	Intergenic	Intergenic	-77807.0	NM_001039104	17364.0	Mm.38875	NM_018752	ENSMUSG00000030523	Trpm1	4732499L03Rik|AI606771|Ltrpc1|Mlsn1	transient receptor potential cation channel, subfamily M, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117809716-4	chr11	117809610	117809810	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009304)	promoter-TSS (NM_009304)	43.0	NM_009304	20973.0	Mm.468228	NM_009304	ENSMUSG00000048277	Syngr2	Clast2|cellugyrin	synaptogyrin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-12313478-2	chr15	12313378	12313578	+	618.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8018.0	NM_025673	66629.0	Mm.157655	NM_025673	ENSMUSG00000022200	Golph3	4733401N08Rik|5730410D03Rik|AW413496	golgi phosphoprotein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-108668493-1	chr5	108668393	108668593	+	543.0	f1_c57bl6.idr	intron (NM_008325, intron 1 of 14)	intron (NM_008325, intron 1 of 14)	6303.0	NM_001310692	231583.0	Mm.440571	NM_174870	ENSMUSG00000046959	Slc26a1	Sat1	solute carrier family 26 (sulfate transporter), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129335953-4	chr4	129335848	129336048	+	985.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025970)	promoter-TSS (NM_025970)	-78.0	NM_025970	67106.0	Mm.36575	NM_025970	ENSMUSG00000057572	Zbtb8os	2010001H09Rik|2310028N13Rik|AI851226|Arch|Archm	zinc finger and BTB domain containing 8 opposite strand	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-32172524-1	chr19	32172424	32172624	+	659.0	f0_balb.idr	intron (NM_144792, intron 5 of 9)	ORR1C2|LTR|ERVL-MaLR	38489.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-88721191-2	chr4	88721091	88721291	+	958.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_172871, exon 1 of 1)	exon (NM_172871, exon 1 of 1)	1317.0	NM_172871	242521.0	Mm.260601	NM_172871	ENSMUSG00000070923	Klhl9	8030469P05|C530050O22Rik|mKIAA1354	kelch-like 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-25549377-3	chr9	25549272	25549472	+	696.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 3 of 7)	intron (NM_026189, intron 3 of 7)	67775.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-45088790-4	chr13	45088731	45088931	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-86735.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-36998224-3	chr5	36998012	36998212	+	779.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9130.0	NM_011716	22393.0	Mm.20916	NM_011716	ENSMUSG00000039474	Wfs1	AI481085|wolframin	wolframin ER transmembrane glycoprotein	protein-coding	0.978822524036616	1.23077740084234	1.29860014955701	1.02705007332165	0.98606190131749	0.746686413306474	0.738346866263014	1.51502402217428	-0.386284233684539	0.787877286363266	0.998431161219273
Merged-chr15-98134734-2	chr15	98134634	98134834	+	862.416626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001170710)	TTS (NM_001170710)	10968.0	NM_030121	78541.0	Mm.200766	NM_030121	ENSMUSG00000048175	Asb8	4930539L19Rik|AI788835|C430011H06Rik	ankyrin repeat and SOCS box-containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-99206181-2	chr5	99206081	99206281	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46746.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-112743362-4	chr12	112743259	112743459	+	913.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024602, intron 14 of 18)	intron (NM_001024602, intron 14 of 18)	10037.0	NR_105905	102466989.0		NR_105905	ENSMUSG00000099165	Mir6940	Gm27655|mmu-mir-6940	microRNA 6940	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-92312469-3	chr5	92312357	92312557	+	946.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2433.0	NM_172713	231452.0	Mm.86564	NM_172713	ENSMUSG00000029415	Sdad1	4931421J16|AA591032|AW538460	SDA1 domain containing 1	protein-coding	5.68764256293963	5.65618745590717	4.5297418105722	3.97852989883917	5.2964989178594	4.54151600975884	4.45338191766211	4.26134756957079	-0.529308831282286	0.226368668332161	0.719272055786352
Merged-chr6-99786076-1	chr6	99785976	99786176	+	545.0	f1_balb.idr	Intergenic	Intergenic	-59684.0	NM_001037539	50501.0	Mm.87365	NM_015768	ENSMUSG00000030069	Prok2	Bv8|PK2|Prok1	prokineticin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-32708534-4	chr3	32708438	32708638	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019673)	promoter-TSS (NM_019673)	-8.0	NM_019673	56456.0	Mm.41077	NM_019673	ENSMUSG00000027671	Actl6a	2810432C06Rik|AI851094|ARP4|Actl6|Baf53a|C79802	actin-like 6A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-40951519-2	chr3	40951419	40951619	+	731.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001040399, intron 1 of 9)	intron (NM_001040399, intron 1 of 9)	888.0	NM_001040399	214048.0	Mm.46782	NM_027663	ENSMUSG00000025762	Larp1b	1700108L22Rik|4933421B21Rik|AA690246|Larp2	La ribonucleoprotein domain family, member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-32218873-2	chr10	32218773	32218973	+	567.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025286, intron 3 of 3)	Lx3B|LINE|L1	-609148.0	NM_001146349	268291.0	Mm.295212	NM_001146349	ENSMUSG00000063760	Rnf217	AU016819|Ibrdc1	ring finger protein 217	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-138846218-4	chr7	138846121	138846321	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026391)	promoter-TSS (NM_026391)	46.0	NM_001045483	69546.0	Mm.31598	NM_027115	ENSMUSG00000041775	Mapk1ip1	2310009E07Rik|AU043776|MISS	mitogen-activated protein kinase 1 interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-19928405-2	chr15	19928305	19928505	+	547.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	738345.0	NM_022816	64833.0	Mm.352763	NM_022816	ENSMUSG00000047565	Acot10	Acate3|MT-ACT48|p48	acyl-CoA thioesterase 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70513924-2	chr11	70513824	70514024	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013607, intron 2 of 2)	intron (NM_001013607, intron 2 of 2)	692.0	NM_001013607	327956.0	Mm.244514	NM_001013607	ENSMUSG00000020830	Vmo1	Gm741	vitelline membrane outer layer 1 homolog (chicken)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45098997-3	chr7	45098904	45099104	+	981.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357117, intron 4 of 6)	B3|SINE|B2	4818.0	NM_001357117	14132.0	Mm.3303	NM_010189	ENSMUSG00000003420	Fcgrt	FcRn	Fc receptor, IgG, alpha chain transporter	protein-coding	4.35549777992752	4.37301818130692	4.73011256807459	4.11769146413957	4.95440921273467	4.34052698497726	4.06798643577628	4.30725152882785	0.0776449947922935	0.847225928198028	0.998431161219273
Merged-chr18-82754319-1	chr18	82754219	82754419	+	548.0	f1_c57bl6.idr	TTS (NR_045389)	TTS (NR_045389)	4720.0	NR_045389	76961.0	Mm.396392	NR_045389	ENSMUSG00000101773	2210420H20Rik	-	RIKEN cDNA 2210420H20 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-79407384-2	chr15	79407284	79407484	+	982.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F1|SINE|Alu	-4081.0	NM_172608	223693.0	Mm.323358	NM_172608	ENSMUSG00000009035	Tmem184b	2610507A11|4732495E13Rik	transmembrane protein 184b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116090770-2	chr11	116090670	116090870	+	684.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3775.0	NM_001347642	22378.0	Mm.284792	NM_016852	ENSMUSG00000034341	Wbp2	-	WW domain binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-74840433-3	chr11	74840438	74840638	+	723.266663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010813, intron 4 of 5)	intron (NM_010813, intron 4 of 5)	9614.0	NM_010813	17428.0	Mm.3759	NM_010813	ENSMUSG00000000282	Mnt	Rox|bHLHd3	max binding protein	protein-coding	-0.796629501482603	-0.292301817981988	-0.790168544558108	-0.792600030941842	-0.796030659145127	-0.785329338118526	-0.78947289033156	-0.360431776124272	-0.256906245162794	0.932043008111191	1
Merged-chr15-57973068-2	chr15	57972968	57973168	+	732.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20C1_MM|LTR|ERVK	-12835.0	NM_173862	239463.0	Mm.221241	NM_173862	ENSMUSG00000051225	Fam83a	-	family with sequence similarity 83, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-70651217-2	chr13	70651117	70651317	+	764.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13583.0	NM_144837	218333.0	Mm.139738	NM_144837	ENSMUSG00000034525	Ice1	C77245|mKIAA0947	interactor of little elongation complex ELL subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-57123299-4	chr16	57123206	57123406	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138599, intron 1 of 11)	intron (NM_138599, intron 1 of 11)	1592.0	NM_138599	28185.0	Mm.196933	NM_138599	ENSMUSG00000022752	Tomm70a	2610044B22Rik|D16Ium22|D16Ium22e|D16Wsu109e|Tom70|Tomm70|mKIAA0719	translocase of outer mitochondrial membrane 70A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-60346829-4	chr10	60346749	60346949	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159572)	promoter-TSS (NM_001159572)	-2.0	NM_001159572	74048.0	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-99981221-1	chr3	99981121	99981321	+	769.0	f0_balb.idr	intron (NM_028892, intron 4 of 48)	GSAT_MM|Satellite|Satellite	95804.0	NM_028892	74362.0	Mm.55847	NM_028892	ENSMUSG00000027867	Spag17	4931427F14Rik|PF6|Spag17-ps	sperm associated antigen 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-148673413-3	chr2	148673308	148673508	+	753.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019761, intron 1 of 1)	intron (NM_019761, intron 1 of 1)	767.0	NM_001110159	56488.0	Mm.34663	NM_019761	ENSMUSG00000036992	Nxt1	1110001N02Rik	NTF2-related export protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-117873497-2	chr5	117873397	117873597	+	620.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008712, intron 1 of 27)	B1_Mus1|SINE|Alu	6658.0	NM_008712	18125.0	Mm.44249	NM_008712	ENSMUSG00000029361	Nos1	2310005C01Rik|N-NOS|NC-NOS|NO|NOS|NOS-I|Nos-1|bNOS|nNOS	nitric oxide synthase 1, neuronal	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-33203785-4	chr5	33203678	33203878	+	929.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14460.0	NM_133903	100689.0	Mm.34694	NM_133903	ENSMUSG00000037379	Spon2	2310045I24Rik|AI504350|M-spondin|Mindin|Mspondin	spondin 2, extracellular matrix protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-121259028-3	chr7	121258943	121259143	+	822.138916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-133253.0	NM_001081327	195646.0	Mm.247449	NM_177575	ENSMUSG00000046321	Hs3st2	6430516N12Rik|A830061E14Rik|AW491345	heparan sulfate (glucosamine) 3-O-sulfotransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-85699240-4	chr8	85699141	85699341	+	879.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357288, intron 1 of 8)	intron (NM_001357288, intron 1 of 8)	-1664.0	NR_106189	102465898.0		NR_106189	ENSMUSG00000098388	Mir8109	Gm27495|mmu-mir-8109	microRNA 8109	ncRNA	2.77122419295224	2.56540127687928	1.98647692763259	3.07554678370525	2.87177214551738	3.43676513875916	1.77841383149497	2.41860203574073	0.205389323303907	0.797613879358002	0.998431161219273
Merged-chr15-79443230-2	chr15	79443130	79443330	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1087.0	NM_001359863	27373.0	Mm.30199	NM_013767	ENSMUSG00000022433	Csnk1e	AI426939|AI551861|AW457082|CK1epsilon|CKIe|KC1epsilon|tau	casein kinase 1, epsilon	protein-coding	-0.297065256997653	-0.3561384687118	-0.547817982212725	0.0609288934777529	-0.554245639276795	-0.54356574614663	-0.547053896031966	-0.550020763303461	-3.34233425063472	0.195249899288518	1
Merged-chr15-79832183-2	chr15	79832083	79832283	+	557.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013362, intron 4 of 8)	intron (NM_001013362, intron 4 of 8)	2150.0	NM_001013360	504193.0	Mm.38438	NM_029079	ENSMUSG00000089837	Npcd	Cbx6-Nptxr	neuronal pentraxin chromo domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-88145922-3	chr11	88145821	88146021	+	693.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198013, intron 1 of 10)	intron (NM_198013, intron 1 of 10)	-23644.0	NM_001172099	103841.0	Mm.374846	NM_198013	ENSMUSG00000018378	Cuedc1	AI841487|C330016O16Rik	CUE domain containing 1	protein-coding	2.06247391363825	2.56968088445328	2.07965819738453	2.51957811030849	2.41189469368221	1.76043694860547	2.71067174219447	3.01152156518321	0.509212306865667	0.538269032514019	0.954124670358987
Merged-chr17-55960295-2	chr17	55960195	55960395	+	738.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_108021)	promoter-TSS (NR_108021)	-894.0	NR_108021	100504333.0	Mm.391908	NR_108021	ENSMUSG00000097077	Gm16712	-	predicted gene, 16712	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-83787868-2	chr17	83787768	83787968	+	625.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_054082, intron 11 of 16)	B2_Mm1t|SINE|B2	58922.0	NM_025325	107766.0	Mm.30100	NM_025325	ENSMUSG00000000673	Haao	0610007K21Rik|0610012J07Rik|3-HAO|3-HAOxase|3HAO	3-hydroxyanthranilate 3,4-dioxygenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-104240451-2	chr8	104240351	104240551	+	617.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045642, intron 4 of 8)	L2a|LINE|L2	8107.0	NR_045642	57813.0	Mm.183110	NM_021028	ENSMUSG00000035824	Tk2	AU024611|mt-TK	thymidine kinase 2, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-54060251-3	chr5	54060154	54060354	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081103, intron 2 of 11)	intron (NM_001081103, intron 2 of 11)	61731.0	NM_001081103	116873.0	Mm.265985	NM_054083	ENSMUSG00000039156	Stim2	-	stromal interaction molecule 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-80565230-4	chr17	80565138	80565338	+	935.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360144, intron 1 of 9)	MMERVK10D3_I-int|LTR|ERVK	-1404.0	NM_001033443	381113.0	Mm.329216	NM_001033443	ENSMUSG00000033966	Cdkl4	AU067824|Gm942	cyclin-dependent kinase-like 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-11495801-2	chr2	11495701	11495901	+	594.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177758, intron 1 of 14)	intron (NM_001177758, intron 1 of 14)	6289.0	NM_001177754	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-74597181-3	chr13	74597070	74597270	+	804.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42683.0	NM_030711	80898.0	Mm.83526	NM_030711	ENSMUSG00000021583	Erap1	A-LAP|ARTS-1|Arts1|ERAAP|PILSA|PILSAP	endoplasmic reticulum aminopeptidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-101552350-4	chr6	101552248	101552448	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-174451.0	NM_018884	55983.0	Mm.321654	NM_018884	ENSMUSG00000035357	Pdzrn3	1110020C07Rik|AI429718|AL023082|LNX3|SEMACAP3|Semcap3	PDZ domain containing RING finger 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-121580900-2	chr3	121580800	121581000	+	623.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48556.0	NM_145394	213603.0	Mm.33062	NM_145394	ENSMUSG00000039865	Slc44a3	BC010552	solute carrier family 44, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-144165510-4	chr2	144165420	144165620	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	23770.0	NR_136884	433481.0	Mm.330630	NR_136884	ENSMUSG00000074758	Gm5535	EG433481	predicted gene 5535	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-47569608-2	chr2	47569508	47569708	+	624.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-1244501.0	NM_007396	11480.0	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133297861-2	chr4	133297787	133297987	+	688.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_199306, intron 12 of 15)	intron (NM_199306, intron 12 of 15)	-20097.0	NR_110978	52174.0	Mm.244748	NM_025667	ENSMUSG00000028857	Tmem222	5730406H10Rik|AA409341|D4Ertd196e	transmembrane protein 222	protein-coding	1.30513439058021	0.638665583220973	1.35054832742348	1.39508726399787	1.02923369259718	0.640968058690372	0.827374406273269	0.621815588865086	-2.0976111694939	0.182367930419852	0.656283871978818
Merged-chr5-99452187-4	chr5	99452139	99452339	+	709.033325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 2 of 3)	intron (NR_030692, intron 2 of 3)	-199312.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-33148019-3	chr4	33147956	33148156	+	864.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008075, intron 2 of 9)	B3|SINE|B2	15500.0	NM_008075	14408.0	Mm.14116	NM_008075	ENSMUSG00000028280	Gabrr1	GABA-C	gamma-aminobutyric acid (GABA) C receptor, subunit rho 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-145283595-1	chr4	145283495	145283695	+	556.0	f0_balb.idr	intron (NM_009401, intron 10 of 12)	intron (NM_009401, intron 10 of 12)	31552.0	NM_009401	21941.0	Mm.12810	NM_009401	ENSMUSG00000028602	Tnfrsf8	Cd30|D1S166E|Ki|Ki-1	tumor necrosis factor receptor superfamily, member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167860711-4	chr2	167860622	167860822	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-71605.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-8872650-2	chr10	8872550	8872750	+	611.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 1 of 19)	B1_Mus2|SINE|Alu	13420.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-3139134-2	chr11	3139024	3139224	+	1000.0	f0_balb.idr|f1_balb.idr	intron (NM_030207, intron 22 of 32)	MTA_Mm|LTR|ERVL-MaLR	15103.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-130937066-3	chr6	130936970	130937170	+	866.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVB4_3-LTR_MM|LTR|ERVK	310292.0	NM_001170851	16633.0	Mm.4783	NM_008462	ENSMUSG00000030187	Klra2	Klra30|Ly49b	killer cell lectin-like receptor, subfamily A, member 2	protein-coding	1.8817667137098	2.10381936002216	2.3208515700525	2.12613326746477	2.62364343466806	2.11895797799871	3.18777464374439	2.13693792918876	1.10245977122712	0.187718304160127	0.665294667185861
Merged-chr13-54578332-4	chr13	54578228	54578428	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019968, intron 2 of 3)	intron (NM_019968, intron 2 of 3)	3315.0	NM_019968	56795.0	Mm.89484	NM_019968	ENSMUSG00000025870	Arl10	Arl10a|Arm1	ADP-ribosylation factor-like 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-13160468-4	chr16	13160378	13160578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50742.0	NM_015769	50505.0	Mm.287837	NM_015769	ENSMUSG00000022545	Ercc4	AI606920|Xpf	excision repair cross-complementing rodent repair deficiency, complementation group 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76659822-4	chr15	76659732	76659932	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358912)	promoter-TSS (NM_001358912)	-26.0	NM_001358910	16581.0	Mm.378950	NM_010630	ENSMUSG00000004187	Kifc2	-	kinesin family member C2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-64594535-2	chr18	64594435	64594635	+	856.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001488, intron 2 of 27)	intron (NM_001001488, intron 2 of 27)	66465.0	NM_001001488	54670.0	Mm.270043	NM_001001488	ENSMUSG00000039529	Atp8b1	AI451886|FIC1|Ic	ATPase, class I, type 8B, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-36828371-4	chr16	36828265	36828465	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113401)	promoter-TSS (NM_001113401)	-35.0	NM_177128	320299.0	Mm.222934	NM_177128	ENSMUSG00000022837	Iqcb1	6820449I09Rik|AV128382|NPHP5	IQ calmodulin-binding motif containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-127524583-4	chr2	127524457	127524657	+	989.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2463.0	NR_110989	56461.0	Mm.315292	NM_019789	ENSMUSG00000079056	Kcnip3	4933407H12Rik|AI413860|Csen|DREAM|KChIP3|R74849	Kv channel interacting protein 3, calsenilin	protein-coding	2.66768180185704	2.38943931627731	2.5800644686988	3.43673948302987	1.34195565308115	3.4297052167554	2.15614912678933	2.51735742866484	-0.471400523161138	0.583796675343756	0.966605096441162
Merged-chr1-87657070-1	chr1	87656970	87657170	+	541.0	f1_c57bl6.idr	intron (NM_001110192, intron 2 of 26)	intron (NM_001110192, intron 2 of 26)	36758.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-10874810-2	chr15	10874710	10874910	+	747.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	45759.0	NR_040357	100502601.0	Mm.399434	NR_040357		Gm19276	-	predicted gene, 19276	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124683825-4	chr6	124683701	124683901	+	838.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149320, intron 1 of 11)	MIR3|SINE|MIR	20697.0	NM_145130	14792.0	Mm.273915	NM_145130	ENSMUSG00000004270	Lpcat3	C3f|Grcc3f|Lpcat|Lpeat|Lplat5|Lpsat|Mboat5|Moact5|Oact5|PTG	lysophosphatidylcholine acyltransferase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-21037375-3	chr10	21037286	21037486	+	665.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358561, intron 17 of 22)	Lx8b|LINE|L1	-3434.0	NM_001177776	52906.0	Mm.253280	NM_026203	ENSMUSG00000019986	Ahi1	1700015F03Rik|Ahi-1|D10Bwg0629e	Abelson helper integration site 1	protein-coding	1.93663659344459	2.15411845037486	2.20909608047246	2.35329089258407	1.95117175937998	1.85126815010087	2.22558287701666	2.36498617804994	-0.138743433079355	0.873856305738314	0.998431161219273
Merged-chr9-83652942-4	chr9	83652838	83653038	+	893.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38537.0	NR_046066	100039222.0	Mm.405596	NR_046066	ENSMUSG00000100155	Gm2109	-	predicted gene 2109	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-113758149-1	chr7	113758049	113758249	+	542.0	f1_balb.idr	Intergenic	Intergenic	-7849.0	NM_145584	233744.0	Mm.334160	NM_145584	ENSMUSG00000038156	Spon1	AI666765|AW455831|BC020531|D330035F22Rik|FSP	spondin 1, (f-spondin) extracellular matrix protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-127554634-2	chr3	127554534	127554734	+	693.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_197997, intron 1 of 25)	B1_Mur2|SINE|Alu	1145.0	NM_197997	71643.0	Mm.274884	NM_197997	ENSMUSG00000051278	Zgrf1	4930422G04Rik|AI448607	zinc finger, GRF-type containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71379670-2	chr8	71379570	71379770	+	698.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010150, intron 1 of 3)	intron (NM_010150, intron 1 of 3)	2282.0	NM_010150	13864.0	Mm.28989	NM_010150	ENSMUSG00000002393	Nr2f6	AV090102|COUP-TF3|EAR2|Erbal2	nuclear receptor subfamily 2, group F, member 6	protein-coding	-0.0692936930189892	-0.203328952316702	-0.208471032377606	0.340036140599349	-0.218080522516755	0.553792785253341	-0.207335789093414	-0.211752109706995	0.370008412301778	0.875769736563699	1
Merged-chr11-23679377-4	chr11	23679237	23679437	+	978.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033654, intron 4 of 17)	intron (NM_001033654, intron 4 of 17)	13361.0	NM_028304	74467.0	Mm.29536	NM_028304	ENSMUSG00000020280	Pus10	2810013G11Rik|4933435A13Rik|AU014648|C77560|Ccdc139	pseudouridylate synthase 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56279065-2	chr17	56278965	56279165	+	609.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_025836, exon 8 of 8)	3' UTR (NM_025836, exon 8 of 8)	-2298.0	NM_174989	106759.0	Mm.203952	NM_174989	ENSMUSG00000047123	Ticam1	AW046014|AW547018|TICAM-1|TRIF	toll-like receptor adaptor molecule 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-157534354-6	chr3	157534246	157534446	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_152231)	promoter-TSS (NR_152231)	181.0	NM_001355386	53861.0	Mm.259036	NM_017381	ENSMUSG00000028180	Zranb2	AI227013|Zfp265|Zis|Znf265	zinc finger, RAN-binding domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-50773784-2	chr9	50773684	50773884	+	603.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-1441.0	NM_133981	102580.0	Mm.160035	NM_133981	ENSMUSG00000032059	Alg9	8230402H15Rik|AI747665|B430313H07Rik|Dibd1	asparagine-linked glycosylation 9 (alpha 1,2 mannosyltransferase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-168905004-2	chr2	168904904	168905104	+	561.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	50583.0	NM_009564	22722.0	Mm.2095	NM_009564	ENSMUSG00000027551	Zfp64	-	zinc finger protein 64	protein-coding	0.54576959038612	1.2528470861543	1.0734976281898	0.74551180135221	0.856628264111396	1.48710133279631	0.772764228632613	0.561038957822936	0.184880240734613	0.903740184731643	0.998431161219273
Merged-chr19-6375846-2	chr19	6375746	6375946	+	769.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_122118, exon 12 of 12)	non-coding (NR_122118, exon 12 of 12)	-8562.0	NM_011224	19309.0	Mm.27806	NM_011224	ENSMUSG00000032648	Pygm	AI115133|PG	muscle glycogen phosphorylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-95050104-4	chr4	95050010	95050210	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010591, exon 1 of 1)	3' UTR (NM_010591, exon 1 of 1)	2112.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128359773-2	chr2	128359673	128359873	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_028590, intron 1 of 2)	intron (NR_028590, intron 1 of 2)	69578.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-65696526-2	chr18	65696437	65696637	+	939.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4|SINE|ID	-1731.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	-0.762803289301568	-1.10544259309554	-1.11614960012009	-1.12425028724527	-1.12678658544461	-1.10312234000797	-1.11372576842064	-0.823703745348463	-0.24845674615299	0.940606257856883	1
Merged-chr15-4043279-4	chr15	4043180	4043380	+	887.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024188, intron 3 of 16)	intron (NM_024188, intron 3 of 16)	-15874.0	NR_028266	414066.0	Mm.394461	NR_028266		BC037032	-	cDNA Sequence BC037032	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-89248288-4	chr7	89248165	89248365	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360746, intron 4 of 14)	intron (NM_001360746, intron 4 of 14)	90522.0	NM_028343	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-105777906-4	chr7	105777813	105778013	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162943, intron 1 of 20)	intron (NM_001162943, intron 1 of 20)	9637.0	NM_001162943	233651.0	Mm.334108	NM_001162943	ENSMUSG00000036862	Dchs1	3110041P15Rik|C130033F22Rik|CDH25|FIB1|Gm165|PCDH16	dachsous cadherin related 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-32988926-4	chr19	32988809	32989009	+	895.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-168203.0	NR_039552	100628575.0		NR_039552	ENSMUSG00000106278	Mir3970	mmu-mir-3970|mu-mir-3970	microRNA 3970	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-82235782-2	chr11	82235682	82235882	+	751.083374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55970.0	NM_011329	20290.0	Mm.1283	NM_011329	ENSMUSG00000020702	Ccl1	BF534335|I-309|P500|Scya1|Tca-3|Tca3	chemokine (C-C motif) ligand 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91062479-2	chr16	91062379	91062579	+	822.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_028905, intron 1 of 2)	intron (NM_028905, intron 1 of 2)	6666.0	NM_001163695	74387.0	Mm.236220	NM_028905	ENSMUSG00000039851	4932438H23Rik	4931406G06Rik|AI550392	RIKEN cDNA 4932438H23 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-32563486-1	chr16	32563386	32563586	+	608.0	f0_balb.idr	Intergenic	Intergenic	-45410.0	NM_011638	22042.0	Mm.28683	NM_011638	ENSMUSG00000022797	Tfrc	2610028K12Rik|CD71|E430033M20Rik|Mtvr1|TFR|TFR1|TR|Trfr|p90	transferrin receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-121235690-2	chr11	121235590	121235790	+	863.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1546.0	NM_026272	67608.0	Mm.291832	NM_026272	ENSMUSG00000000056	Narf	4430402O11Rik	nuclear prelamin A recognition factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-96021139-2	chr16	96021039	96021239	+	811.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145125, intron 32 of 41)	intron (NM_145125, intron 32 of 41)	-30179.0	NM_019537	56088.0	Mm.396248	NM_019537	ENSMUSG00000022913	Psmg1	AW552102|Dscr2	proteasome (prosome, macropain) assembly chaperone 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-84182767-6	chr17	84182527	84182727	+	840.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5320.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-85703816-4	chr1	85703726	85703926	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013673, intron 17 of 19)	intron (NM_013673, intron 17 of 19)	32780.0	NM_177055	319997.0	Mm.116691	NM_177055	ENSMUSG00000052760	A630001G21Rik	-	RIKEN cDNA A630001G21 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97438850-2	chr11	97438750	97438950	+	823.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11310.0	NM_021493	58996.0	Mm.394118	NM_021493	ENSMUSG00000049807	Arhgap23	A330041B18Rik	Rho GTPase activating protein 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-86885069-6	chr10	86884973	86885173	+	910.555542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138673, intron 43 of 68)	intron (NM_138673, intron 43 of 68)	106068.0	NM_175331	103466.0	Mm.200446	NM_175331	ENSMUSG00000054027	Nt5dc3	AU040402|AW540062|C630002B14Rik|TU12B1-TY	5'-nucleotidase domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105265418-4	chr8	105265318	105265518	+	952.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033161)	promoter-TSS (NM_001033161)	770.0	NM_015821	50788.0	Mm.334764	NM_015821	ENSMUSG00000033313	Fbxl8	FBL8	F-box and leucine-rich repeat protein 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-152928368-2	chr2	152928268	152928468	+	597.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4840.0	NM_010226	14239.0	Mm.205798	NM_010226	ENSMUSG00000074676	Foxs1	FREAC10|Fkh3|Fkhl18	forkhead box S1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85632606-2	chr12	85632506	85632706	+	786.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205053, intron 3 of 3)	intron (NM_001205053, intron 3 of 3)	32588.0	NM_001205053	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-34816343-2	chr1	34816243	34816443	+	609.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001160235, exon 8 of 8)	3' UTR (NM_001160235, exon 8 of 8)	14621.0	NM_183019	226970.0	Mm.41604	NM_183019	ENSMUSG00000037509	Arhgef4	9330140K16Rik|Asef	Rho guanine nucleotide exchange factor (GEF) 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167987188-2	chr2	167987088	167987288	+	586.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080708, intron 13 of 21)	intron (NM_001080708, intron 13 of 21)	23405.0	NM_001080708	69553.0	Mm.68454	NM_001080708	ENSMUSG00000074577	Ripor3	2310033K02Rik|Fam65c|Gm124	RIPOR family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128339459-4	chr2	128339352	128339552	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028590, intron 1 of 2)	intron (NR_028590, intron 1 of 2)	89899.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	1.90976688794175	1.59635115909052	1.84484642362179	2.19976105631781	2.10045046527624	1.15730847076028	1.13538862446872	2.12329483687122	-0.479016067114155	0.671433329219466	0.994059363767912
Merged-chr5-21219808-2	chr5	21219708	21219908	+	717.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_153365, intron 6 of 26)	intron (NR_153365, intron 6 of 26)	33541.0	NM_001359877	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-44581369-1	chr19	44581269	44581469	+	667.0	f1_c57bl6.idr	Intergenic	Intergenic	18515.0	NM_176958	319594.0	Mm.145278	NM_176958	ENSMUSG00000036450	Hif1an	2310046M24Rik|A830014H24Rik|FIH|FIH1	hypoxia-inducible factor 1, alpha subunit inhibitor	protein-coding	1.14372882989606	-0.0377044209756298	-0.0451608371151469	-0.0509767082571754	0.114751304946522	-0.0360359545465257	-0.0435084750774583	0.449191144315206	-1.46189774137071	0.500555033136246	1
Merged-chr3-100440169-4	chr3	100440079	100440279	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13774.0	NR_040543	73806.0	Mm.396549	NR_040543	ENSMUSG00000086923	4930406D18Rik	-	RIKEN cDNA 4930406D18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-104994779-4	chr3	104994643	104994843	+	900.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33034.0	NM_009520	22414.0	Mm.10740	NM_009520	ENSMUSG00000027840	Wnt2b	Wnt13	wingless-type MMTV integration site family, member 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-45440242-2	chr9	45440149	45440349	+	638.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081270, intron 1 of 32)	intron (NM_001081270, intron 1 of 32)	-9017.0	NR_040732	74602.0	Mm.394117	NR_040732	ENSMUSG00000097074	4833428L15Rik	-	RIKEN cDNA 4833428L15 gene	ncRNA	1.311053585615	0.838103201698231	2.34838434098918	1.03654019726365	1.77644010203224	2.03973111623061	0.821501018039167	0.802672191813142	-0.165660212798961	0.904342144694084	0.998431161219273
Merged-chr2-93518000-2	chr2	93517900	93518100	+	746.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55050.0	NM_001136055	12521.0	Mm.4261	NM_007656	ENSMUSG00000027215	Cd82	AA682076|AL023070|C33|IA4|Kai1|Tspan27	CD82 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-27715547-4	chr15	27715454	27715654	+	968.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34012.0	NM_001242423	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-78109867-4	chr9	78109775	78109975	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081490)	promoter-TSS (NM_001081490)	683.0	NM_001163780	56542.0	Mm.288719	NM_019987	ENSMUSG00000009828	Ick	2210420N10Rik|AI848300|Mrk	intestinal cell kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-71544860-2	chr6	71544760	71544960	+	719.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355675, intron 1 of 5)	B1_Mus1|SINE|Alu	507.0	NM_001355675	66700.0	Mm.181278	NM_025783	ENSMUSG00000053119	Chmp3	25.1|4921505F14Rik|9130011K15Rik|CGI-49|D6Ertd286e|NEDF|Vps24	charged multivesicular body protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-121680971-4	chr11	121680837	121681037	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-7786.0	NM_178664	210004.0	Mm.386847	NM_178664	ENSMUSG00000046605	B3gntl1	6030413G23Rik	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36018300-4	chr18	36018190	36018390	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001167891, exon 10 of 10)	exon (NM_001167891, exon 10 of 10)	53460.0	NR_110349	74002.0	Mm.196944	NM_028707	ENSMUSG00000024347	Psd2	6330404E20Rik|AW125584|EFA6C	pleckstrin and Sec7 domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-64837955-4	chr11	64837855	64838055	+	913.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	-141080.0	NM_023479	68626.0	Mm.157711	NM_023479	ENSMUSG00000020549	Elac2	1110017O07Rik|D11Wsu80e|Hpc2	elaC ribonuclease Z 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-94886198-2	chr3	94886098	94886298	+	662.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008945, exon 3 of 7)	exon (NM_008945, exon 3 of 7)	760.0	NM_008945	19172.0	Mm.368	NM_008945	ENSMUSG00000005779	Psmb4	Pros-27	proteasome (prosome, macropain) subunit, beta type 4	protein-coding	-1.56355737717652	-1.81244775989375	-1.82128546162293	-1.82854501295842	-1.83962066705452	-1.81053259306168	-1.81928479966835	-1.82724555674025	-1.28500227969968	0.715751224811686	1
Merged-chr5-9101624-3	chr5	9101522	9101722	+	968.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081029, intron 2 of 4)	intron (NM_001081029, intron 2 of 4)	885.0	NM_001081029	652925.0	Mm.439954	NM_001081029	ENSMUSG00000079659	Tmem243	4930420K17Rik|E030031F02Rik	transmembrane protein 243, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129197848-3	chr2	129197785	129197985	+	951.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159593)	promoter-TSS (NM_001159593)	-888.0	NM_015747	20515.0	Mm.272675	NM_015747	ENSMUSG00000027397	Slc20a1	AI607883|Glvr-1|Glvr1	solute carrier family 20, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-119495201-4	chr1	119495164	119495364	+	876.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022327, intron 1 of 4)	intron (NM_022327, intron 1 of 4)	9518.0	NM_022327	64143.0	Mm.27832	NM_022327	ENSMUSG00000004451	Ralb	5730472O18Rik	v-ral simian leukemia viral oncogene B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-56181164-2	chr3	56181064	56181264	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030595, intron 1 of 57)	intron (NM_030595, intron 1 of 57)	2537.0	NM_030595	26422.0	Mm.384353	NM_030595	ENSMUSG00000027799	Nbea	Lyst2|mKIAA1544	neurobeachin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30392273-4	chr2	30392179	30392379	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290508)	promoter-TSS (NM_001290508)	25.0	NM_001290508	57170.0	Mm.285167	NM_020329	ENSMUSG00000026856	Dolpp1	0610011H20Rik|AB030189|LSFR2	dolichyl pyrophosphate phosphatase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80406379-3	chr7	80406241	80406441	+	688.577759	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081454)	promoter-TSS (NM_001081454)	-905.0	NM_001081454	18550.0	Mm.5241	NM_011046	ENSMUSG00000030530	Furin	9130404I01Rik|Fur|PACE|Pcsk3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding	0.570115543615888	0.222718890149968	0.388961101440839	0.3720613608074	0.842110784116332	0.711884920536078	0.218065467951791	0.212950072591759	0.938714546293874	0.615909647652015	1
Merged-chr10-117217445-4	chr10	117217362	117217562	+	794.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026570, exon 5 of 7)	exon (NM_026570, exon 5 of 7)	7045.0	NM_026570	64050.0	Mm.233529	NM_026570	ENSMUSG00000020171	Yeats4	4930573H17Rik|B230215M10Rik|GAS41|NuBI-1	YEATS domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-133775469-2	chr7	133775369	133775569	+	685.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286031, intron 1 of 11)	intron (NM_001286031, intron 1 of 11)	1334.0	NM_001286032	101437.0	Mm.199223	NM_133941	ENSMUSG00000030986	Dhx32	3110079L04Rik|4732469F02Rik|AA408140|Ddx32|muDDX32	DEAH (Asp-Glu-Ala-His) box polypeptide 32	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27178224-3	chr17	27178122	27178322	+	967.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20A2B_MM|LTR|ERVK	-10458.0	NM_173027	271424.0	Mm.209679	NM_173027	ENSMUSG00000024210	Ip6k3	D830007E07Rik|Ihpk3	inositol hexaphosphate kinase 3	protein-coding	-1.21811458924241	-1.19280204459043	-0.888639684842054	-0.912997980254241	-1.21767959078028	-1.19053916102138	-1.20088041390417	-1.2102865220685	-2.42777039994039	0.462388526746805	1
Merged-chr7-111026666-3	chr7	111026561	111026761	+	669.472229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2290.0	NM_009431	22083.0	Mm.255858	NM_009431	ENSMUSG00000005609	Ctr9	AA409336|Sh2bp1|Tsbp|Tsp|mKIAA0155	CTR9 homolog, Paf1/RNA polymerase II complex component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-78160964-3	chr10	78160860	78161060	+	904.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8808.0	NM_138601	28295.0	Mm.268691	NM_138601	ENSMUSG00000053329	D10Jhu81e	C21orf33|ES1	DNA segment, Chr 10, Johns Hopkins University 81 expressed	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6475504-4	chr19	6475384	6475584	+	959.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205234, intron 9 of 22)	intron (NM_001205234, intron 9 of 22)	56746.0	NM_001205234	18190.0	Mm.329616	NM_020253	ENSMUSG00000033768	Nrxn2	6430591O13Rik|mKIAA0921	neurexin II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167717010-4	chr2	167716927	167717127	+	985.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25850.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55528079-2	chr14	55527979	55528179	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-3098.0	NM_001271917	18185.0	Mm.20422	NM_008736	ENSMUSG00000040632	Nrl	D14H14S46E	neural retina leucine zipper gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-90678691-4	chr15	90678594	90678794	+	952.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033851, intron 1 of 3)	intron (NM_001033851, intron 1 of 3)	694.0	NM_025815	66871.0	Mm.290991	NM_025815	ENSMUSG00000052560	Cpne8	1200003E11Rik|1500031E20Rik	copine VIII	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-89212217-1	chr15	89212117	89212317	+	601.0	f0_balb.idr	intron (NM_026813, intron 1 of 24)	intron (NM_026813, intron 1 of 24)	658.0	NM_027805	71474.0	Mm.184055	NM_026813	ENSMUSG00000036561	Ppp6r2	1110033O10Rik|8430411H09Rik|B230107H12Rik|Pp6r2|Saps2	protein phosphatase 6, regulatory subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-121053177-1	chr14	121053077	121053277	+	591.0	f1_c57bl6.idr	intron (NM_134082, intron 1 of 26)	intron (NM_134082, intron 1 of 26)	17603.0	NM_134082	223254.0	Mm.223980	NM_134082	ENSMUSG00000025555	Farp1	AW228844|BC030329|Cdep	FERM, RhoGEF (Arhgef) and pleckstrin domain protein 1 (chondrocyte-derived)	protein-coding	-0.583568066914508	-0.23121303066259	-0.40628800505721	-0.0662184024571666	-0.582938970388122	-0.572678173081146	-0.576031723086418	-0.578882382426098	-3.27686477529131	0.210113629703822	1
Merged-chr14-103535860-4	chr14	103535741	103535941	+	865.2291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022886, intron 4 of 30)	intron (NM_022886, intron 4 of 30)	22500.0	NM_022886	64929.0	Mm.244003	NM_022886	ENSMUSG00000022123	Scel	9230114I02Rik	sciellin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-41017749-4	chr8	41017641	41017841	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_015457, exon 1 of 3)	non-coding (NR_015457, exon 1 of 3)	273.0	NR_015457	78849.0	Mm.440930	NR_015457	ENSMUSG00000084960	B430010I23Rik	-	RIKEN cDNA B430010I23 gene	ncRNA	3.43884112291239	4.11182587924589	4.14497540157006	3.47315841886333	3.06239217924982	2.40424320772149	4.12270553256196	3.49109586505535	-0.604117987719576	0.298420994386003	0.800257675359925
Merged-chr15-53324473-4	chr15	53324379	53324579	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	21704.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-25371157-3	chr14	25371064	25371264	+	632.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-88021.0	NM_001310666	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-35451815-4	chr2	35451731	35451931	+	914.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010283, intron 1 of 8)	intron (NM_010283, intron 1 of 8)	9618.0	NM_001308299	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111745852-1	chr12	111745752	111745952	+	552.0	f0_balb.idr	intron (NM_001163388, intron 4 of 5)	RSINE1|SINE|B4	-12997.0	NM_001361612	16593.0	Mm.278357	NM_008450	ENSMUSG00000021288	Klc1	AI874768|Kns2	kinesin light chain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-69159340-2	chr17	69159240	69159440	+	619.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355734)	promoter-TSS (NM_001355734)	-16.0	NM_001355736	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-8722629-4	chr15	8722532	8722732	+	846.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11825.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-178330752-4	chr1	178330590	178330790	+	869.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_016805, exon 11 of 14)	exon (NM_016805, exon 11 of 14)	7125.0	NM_016805	51810.0	Mm.86589	NM_016805	ENSMUSG00000039630	Hnrnpu	AA408410|AI256620|AL024194|AL024437|AW557595|C86794|Hnrpu|SAFA|Sp120|hnRNP U	heterogeneous nuclear ribonucleoprotein U	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80015042-2	chr10	80014942	80015142	+	542.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_013850, exon 45 of 46)	exon (NM_013850, exon 45 of 46)	-1630.0	NM_001142701	70719.0	Mm.243954	NM_027521	ENSMUSG00000035697	Arhgap45	6330406L22Rik|AW539505|Ha-1|Hmha1	Rho GTPase activating protein 45	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27427881-2	chr2	27427781	27427981	+	724.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009500)	promoter-TSS (NM_009500)	-273.0	NM_009500	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-14293091-1	chr10	14292991	14293191	+	587.0	f0_balb.idr	Intergenic	ERVB4_2-LTR_MM|LTR|ERVK	251945.0	NM_001002268	215798.0	Mm.440142	NM_001002268	ENSMUSG00000039116	Adgrg6	1190004A11Rik|AI449247|AW045736|DREG|Gm222|Gpr126	adhesion G protein-coupled receptor G6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-181842028-1	chr1	181841928	181842128	+	1000.0	f0_balb.idr	intron (NM_133815, intron 1 of 13)	CpG	373.0	NM_133815	98386.0	Mm.4538	NM_133815	ENSMUSG00000004880	Lbr	AI505894|ic	lamin B receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-90042490-2	chr9	90042390	90042590	+	803.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-11777.0	NM_007801	13036.0	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35867175-4	chr17	35867073	35867273	+	986.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_175242, exon 1 of 3)	5' UTR (NM_175242, exon 1 of 3)	558.0	NM_175242	76448.0	Mm.359982	NM_175242	ENSMUSG00000034595	Ppp1r18	2310014H01Rik|AA407849|AI450394	protein phosphatase 1, regulatory subunit 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-113442409-4	chr13	113442288	113442488	+	891.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60456.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-99465027-4	chr11	99464925	99465125	+	830.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26872.0	NM_023256	66809.0	Mm.28042	NM_023256	ENSMUSG00000035775	Krt20	9030623C06Rik|Ck-20|Ck20|K20|Krt21	keratin 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45719653-2	chr7	45719553	45719753	+	997.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009077, intron 3 of 5)	intron (NM_009077, intron 3 of 5)	-1567.0	NM_001033170	73813.0	Mm.322591	NM_001033170	ENSMUSG00000054161	Fam83e	4930403C10Rik	family with sequence similarity 83, member E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-95559945-4	chr9	95559897	95560097	+	984.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_198414, exon 1 of 1)	exon (NM_198414, exon 1 of 1)	180.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-12372203-4	chr17	12372109	12372309	+	944.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6400.0	NM_008877	18815.0	Mm.971	NM_008877	ENSMUSG00000059481	Plg	AI649309|Pg	plasminogen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-59899747-4	chr10	59899648	59899848	+	843.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20157.0	NM_019965	56709.0	Mm.103610	NM_019965	ENSMUSG00000020109	Dnajb12	Dj10|mDj10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-76371336-4	chr16	76371208	76371408	+	884.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173440, intron 1 of 3)	intron (NM_173440, intron 1 of 3)	1741.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-77214931-3	chr11	77214826	77215026	+	625.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1499.0	NM_177710	237860.0	Mm.440381	NM_177710	ENSMUSG00000037926	Ssh2	SSH-2|SSH-2L|mSSH-2L	slingshot protein phosphatase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-87706296-4	chr16	87706192	87706392	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007520, intron 1 of 4)	intron (NM_007520, intron 1 of 4)	7338.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135876799-4	chr4	135876683	135876883	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2937.0	NM_026383	52830.0	Mm.29159	NM_026383	ENSMUSG00000028675	Pnrc2	0610011E17Rik|D4Bwg0593e	proline-rich nuclear receptor coactivator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-36792637-4	chr15	36792515	36792715	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253806, intron 1 of 5)	CpG	-1683.0	NM_001253807	22631.0	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126763770-4	chr8	126763667	126763867	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-85253.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171033964-2	chr1	171033864	171034064	+	778.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	tRNA-Asn-AAC|tRNA|tRNA	15038.0	NM_144559	246256.0	Mm.251254	NM_144559	ENSMUSG00000059089	Fcgr4	4833442P21Rik|CD16-2|FcgRIV|FcgammaRIV|Fcgr3a|Fcrl3	Fc receptor, IgG, low affinity IV	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-28416815-1	chr15	28416715	28416915	+	715.0	f0_balb.idr	intron (NM_133365, intron 65 of 78)	intron (NM_133365, intron 65 of 78)	213049.0	NM_133365	110082.0	Mm.248464	NM_133365	ENSMUSG00000022262	Dnah5	AU022615|Dnahc5|Mdnah5|b2b1134Clo|b2b1154Clo|b2b1537Clo|b2b1565Clo|b2b3491Clo|b2b601Clo|mKIAA1603	dynein, axonemal, heavy chain 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-35894451-3	chr12	35894341	35894541	+	680.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31180.0	NM_207531	403205.0	Mm.190508	NM_207531	ENSMUSG00000036231	Agr3	BCMP11|E030025L21Rik|Gm888	anterior gradient 3	protein-coding	2.11568737428754	2.24351027704517	2.64671979473197	3.20887932942326	2.00404280583819	1.66112732642131	1.3337786940958	3.0491871454456	-0.864631018397218	0.356333591518484	0.85378439273359
Merged-chr10-81527553-2	chr10	81527453	81527653	+	621.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-3328.0	NM_010304	14676.0	Mm.1546	NM_010304	ENSMUSG00000034792	Gna15	G[a]15|Galpha15	guanine nucleotide binding protein, alpha 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-79746638-4	chr10	79746539	79746739	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172551)	promoter-TSS (NM_172551)	-58.0	NM_172551	216151.0	Mm.39001	NM_172551	ENSMUSG00000020329	Polrmt	1110018N15Rik|4932416K13	polymerase (RNA) mitochondrial (DNA directed)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-69845029-1	chr16	69844929	69845129	+	692.0	f1_c57bl6.idr	Intergenic	ORR1A2-int|LTR|ERVL-MaLR	18715.0	NM_173069	224318.0	Mm.212743	NM_173069	ENSMUSG00000063163	Speer2	SPEER-2	spermatogenesis associated glutamate (E)-rich protein 2	protein-coding	0.345605484806476	-0.179089339418264	-0.183444448847075	0.104652049353776	-0.191516318428693	-0.178105726185833	-0.182485082378046	0.33226361298424	-0.606258368904506	0.801034504836051	1
Merged-chr9-108559209-2	chr9	108559109	108559309	+	770.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175143, intron 9 of 9)	intron (NM_175143, intron 9 of 9)	-1292.0	NM_011830	23918.0	Mm.6065	NM_011830	ENSMUSG00000062867	Impdh2	IMPD	inosine monophosphate dehydrogenase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-63995715-2	chr7	63995615	63995815	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56800.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-121092824-2	chr8	121092724	121092924	+	864.099976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8438.0	NM_010426	15227.0	Mm.33897	NM_010426	ENSMUSG00000042812	Foxf1	AI450827|FREAC1|Foxf1a|Freac-1|HFH-8|Hfh8	forkhead box F1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-36390929-1	chr19	36390829	36391029	+	548.0	f0_balb.idr	intron (NM_029508, intron 1 of 8)	intron (NM_029508, intron 1 of 8)	11862.0	NM_029508	76073.0	Mm.259180	NM_029508	ENSMUSG00000024805	Pcgf5	0610009F02Rik|1110054A01Rik|5830406C17Rik|5830443C21Rik|9530023M17Rik|AI324127	polycomb group ring finger 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-66883856-4	chr9	66883730	66883930	+	898.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	35875.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-17569467-4	chr14	17569374	17569574	+	986.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-91486.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-42086281-2	chr19	42086181	42086381	+	858.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198108)	promoter-TSS (NM_198108)	89.0	NM_198108	226123.0	Mm.259441	NM_198108	ENSMUSG00000049670	Morn4	-	MORN repeat containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-31853110-2	chr17	31853010	31853210	+	866.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010831, intron 3 of 13)	intron (NM_010831, intron 3 of 13)	2694.0	NM_010831	17691.0	Mm.290941	NM_010831	ENSMUSG00000024042	Sik1	Hrt-20|Msk|Sik|Sik-1|Snf1lk	salt inducible kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-70989678-4	chr17	70989583	70989783	+	967.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023402, intron 1 of 3)	intron (NM_023402, intron 1 of 3)	833.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19083292-3	chr7	19083157	19083357	+	766.75	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001190491)	promoter-TSS (NM_001190491)	-592.0	NR_126095	13400.0	Mm.6529	NM_032418	ENSMUSG00000030409	Dmpk	DM|DMK|Dm15|MDPK|MT-PK	dystrophia myotonica-protein kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44986611-4	chr9	44986502	44986702	+	998.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_013487, exon 5 of 5)	3' UTR (NM_013487, exon 5 of 5)	4816.0	NM_013487	12500.0	Mm.4527	NM_013487	ENSMUSG00000032094	Cd3d	T3d	CD3 antigen, delta polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-69156192-2	chr17	69156092	69156292	+	705.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013813)	promoter-TSS (NM_013813)	-552.0	NM_013813	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-160220725-4	chr2	160220617	160220817	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	106777.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-110649813-2	chr7	110649713	110649913	+	683.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22156.0	NM_009627	11535.0	Mm.1408	NM_009627	ENSMUSG00000030790	Adm	AM	adrenomedullin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119862659-2	chr11	119862559	119862759	+	996.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028898, intron 20 of 33)	intron (NM_028898, intron 20 of 33)	-19630.0	NR_039557	100628577.0		NR_039557	ENSMUSG00000093061	Mir5098	mmu-mir-5098|mu-mir-5098	microRNA 5098	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-143033084-3	chr5	143032987	143033187	+	590.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359851, intron 12 of 15)	intron (NM_001359851, intron 12 of 15)	72732.0	NM_007984	14086.0	Mm.289707	NM_007984	ENSMUSG00000029581	Fscn1	AI663989|Fan1|fascin-1	fascin actin-bundling protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-128668816-2	chr4	128668716	128668916	+	600.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001195130, intron 1 of 14)	intron (NM_001195130, intron 1 of 14)	14114.0	NM_001195130	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-33332220-4	chr12	33332098	33332298	+	940.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033436, intron 2 of 7)	intron (NM_001033436, intron 2 of 7)	29683.0	NM_001033436	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81299757-4	chr10	81299690	81299890	+	903.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293647, intron 1 of 17)	intron (NM_001293647, intron 1 of 17)	6827.0	NM_001146687	18717.0	Mm.24222	NM_008844	ENSMUSG00000034902	Pip5k1c	AI115456|AI835305|Pip5kIgamma	phosphatidylinositol-4-phosphate 5-kinase, type 1 gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45523972-4	chr7	45523879	45524079	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008654, exon 2 of 3)	exon (NM_008654, exon 2 of 3)	2289.0	NM_008654	17872.0	Mm.4048	NM_008654	ENSMUSG00000040435	Ppp1r15a	9630030H21|Gadd34|Myd116	protein phosphatase 1, regulatory (inhibitor) subunit 15A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-108673368-2	chr5	108673268	108673468	+	615.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310691, intron 2 of 2)	intron (NM_001310691, intron 2 of 2)	1428.0	NM_001310692	231583.0	Mm.440571	NM_174870	ENSMUSG00000046959	Slc26a1	Sat1	solute carrier family 26 (sulfate transporter), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-99906353-4	chr5	99906250	99906450	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	72588.0	NM_001077266	11991.0	Mm.150231	NM_007516	ENSMUSG00000000568	Hnrnpd	Auf1|Hnrpd	heterogeneous nuclear ribonucleoprotein D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55756785-2	chr19	55756685	55756885	+	939.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001331146, intron 4 of 14)	intron (NM_001331146, intron 4 of 14)	14975.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-42145532-2	chr19	42145432	42145632	+	615.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1857.0	NM_183195	277010.0	Mm.206250	NM_183195	ENSMUSG00000044345	Marveld1	AI504298|Mrvldc1	MARVEL (membrane-associating) domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-96695954-2	chr15	96695854	96696054	+	692.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355633, intron 3 of 14)	intron (NM_001355633, intron 3 of 14)	3774.0	NM_001355633	67760.0	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-148674747-1	chr4	148674647	148674847	+	601.0	f1_c57bl6.idr	Intergenic	Intergenic	31430.0	NM_001085505	230909.0	Mm.332067	NM_001085505	ENSMUSG00000070577	Gm572	b2b1167Clo	predicted gene 572	protein-coding	0.315370543813757	-0.107739272712697	-0.301037487342442	-0.304254063820352	-0.308790114259027	-0.295917195095706	0.152753205903179	-0.303692534511518	-0.902620509129022	0.716767309407443	1
Merged-chr7-30535164-4	chr7	30535072	30535272	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178252)	promoter-TSS (NM_178252)	-112.0	NM_001289682	233071.0	Mm.190704	NM_178252	ENSMUSG00000036882	Arhgap33	AW324378|NOMA-GAP|Snx26|TCGAP	Rho GTPase activating protein 33	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-73381833-4	chr14	73381707	73381907	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008410, intron 1 of 5)	intron (NM_008410, intron 1 of 5)	3482.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-109121387-2	chr4	109121287	109121487	+	626.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355190, intron 2 of 21)	intron (NM_001355190, intron 2 of 21)	-3351.0	NM_001134791	100273.0	Mm.366315	NM_133885	ENSMUSG00000028559	Osbpl9	2600011I06Rik|AU015843|Orp-9	oxysterol binding protein-like 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-124843009-2	chr4	124842909	124843109	+	735.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008636, intron 10 of 10)	ID4_|SINE|ID	7555.0	NM_001347196	68920.0	Mm.272397	NM_001142727	ENSMUSG00000078570	1110065P20Rik	C530005M16Rik	RIKEN cDNA 1110065P20 gene	protein-coding	-1.20406370813143	-1.56956373024278	-1.57884638916872	-1.58647144159385	-1.598104728449	-1.56755213932999	-1.57674499865798	-1.58510656085539	-1.70745470802464	0.626337835847419	1
Merged-chr4-32251183-4	chr4	32251085	32251285	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-166250.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	5.89831969642233	6.33033185712611	5.91848865759464	6.21465435313647	6.17029268212926	6.71218141307573	5.95636787158584	6.33329196154498	0.236612891451404	0.313496693508631	0.81520011458963
Merged-chr7-102695590-2	chr7	102695502	102695702	+	562.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2614.0	NM_146361	258358.0	Mm.377455	NM_146361	ENSMUSG00000073967	Olfr557	MOR18-3	olfactory receptor 557	protein-coding	1.9354704472975	2.22306499826889	3.59304538394251	3.79143471814151	1.78842143474136	1.2484458277672	1.19968993081619	2.22945666279403	-2.89206567191872	0.00252164031240334	0.0398477467696619
Merged-chr17-51178207-3	chr17	51178123	51178323	+	949.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028162, intron 1 of 21)	intron (NM_028162, intron 1 of 21)	1129.0	NM_028162	72238.0	Mm.120650	NM_028162	ENSMUSG00000023923	Tbc1d5	1600014N05Rik	TBC1 domain family, member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30958441-2	chr7	30958341	30958541	+	702.166687	f1_balb.idr|f1_c57bl6.idr	exon (NM_017405, exon 9 of 10)	exon (NM_017405, exon 9 of 10)	-1638.0	NM_011680	22282.0	Mm.322453	NM_011680	ENSMUSG00000058239	Usf2	Usf-2|bHLHb12	upstream transcription factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-91172371-4	chr15	91172260	91172460	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011994, intron 6 of 9)	intron (NM_011994, intron 6 of 9)	19647.0	NM_011994	26874.0	Mm.295456	NM_011994	ENSMUSG00000055782	Abcd2	ABC39|ALDL1|ALDR|ALDRP	ATP-binding cassette, sub-family D (ALD), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126885739-4	chr8	126885646	126885846	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	36726.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-13622485-1	chr9	13622385	13622585	+	683.0	f0_balb.idr	intron (NM_001013813, intron 1 of 3)	intron (NM_001013813, intron 1 of 3)	2496.0	NM_001013813	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-69627805-4	chr18	69627715	69627915	+	918.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 8 of 19)	intron (NM_001361128, intron 8 of 19)	281655.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-51890396-2	chr14	51890296	51890496	+	740.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001029990, intron 10 of 13)	B1_Mus1|SINE|Alu	-3214.0	NM_001039676	214922.0	Mm.281343	NM_001039676	ENSMUSG00000072572	Slc39a2	F730005G13Rik|Gm1789|Gm289|Zip2	solute carrier family 39 (zinc transporter), member 2	protein-coding	-0.748972779057542	-1.0881410486151	-1.0988096722587	-1.10601099592824	-0.968384567875079	-1.08582911336631	-0.929332551705037	-1.10570144116994	-0.320774745444915	0.916992449469178	1
Merged-chr18-4689731-2	chr18	4689631	4689831	+	733.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54802.0	NM_001081963	240185.0	Mm.33179	NM_001081963	ENSMUSG00000033960	Jcad	1110056P05Rik|9430020K01Rik|Gm328|mKIAA1462	junctional cadherin 5 associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167900773-2	chr2	167900673	167900873	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31554.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-30507187-4	chr18	30507073	30507273	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	234308.0	NR_151699	225326.0	Mm.194127	NM_181414	ENSMUSG00000033628	Pik3c3	5330434F23Rik|Vps34	phosphatidylinositol 3-kinase catalytic subunit type 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-79908743-4	chr10	79908635	79908835	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198107, intron 1 of 14)	CpG	203.0	NM_001163276	216154.0	Mm.260089	NM_198107	ENSMUSG00000013833	Med16	95kDa|A630083L04|DRIP92|Thrap5|Trap95	mediator complex subunit 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-4476571-4	chr12	4476428	4476628	+	767.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010881, intron 1 of 22)	intron (NM_010881, intron 1 of 22)	654.0	NM_010881	17977.0	Mm.301039	NM_010881	ENSMUSG00000020647	Ncoa1	KAT13A|NCoA-1|NRC-1|SRC-1|SRC-a|SRC1|bHLHe74|mNRC-1	nuclear receptor coactivator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-64392295-4	chr7	64392182	64392382	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026483)	promoter-TSS (NM_026483)	-46.0	NM_026483	67973.0	Mm.26973	NM_026483	ENSMUSG00000030521	Mphosph10	2810453H10Rik|5730405D16Rik|AI326008	M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106823430-2	chr11	106823330	106823530	+	654.200012	f1_balb.idr|f1_c57bl6.idr	intron (NM_025481, intron 17 of 18)	B1_Mus1|SINE|Alu	34178.0	NM_001166685	320162.0	Mm.30524	NM_177088	ENSMUSG00000018372	Cep95	4732496G21Rik|AI118346|AI448335|Ccdc45|D330027A14Rik|F630025I20Rik	centrosomal protein 95	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-88441547-4	chr17	88441435	88441635	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355742, intron 1 of 5)	CpG	831.0	NM_001355742	14236.0	Mm.112824	NM_180974	ENSMUSG00000034998	Foxn2	3230402J05Rik|6030465J18Rik|Fkh19|Foxn1|HTLF	forkhead box N2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-88112032-4	chr17	88111944	88112144	+	958.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13468.0	NM_001190356	225058.0	Mm.312053	NM_001190356		Gm4832	EG225058	predicted gene 4832	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-118796100-4	chr10	118795980	118796180	+	871.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	72823.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-38551333-4	chr6	38551225	38551425	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138680)	promoter-TSS (NM_138680)	-9.0	NM_138680	192196.0	Mm.276133	NM_138680	ENSMUSG00000029823	Luc7l2	4930471C18Rik|AA522013|AU015269|CGI59|Cgi74	LUC7-like 2 (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-35938888-2	chr18	35938788	35938988	+	612.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25942.0	NM_001289602	74002.0	Mm.196944	NM_028707	ENSMUSG00000024347	Psd2	6330404E20Rik|AW125584|EFA6C	pleckstrin and Sec7 domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16916744-2	chr7	16916644	16916844	+	652.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007590, exon 6 of 6)	3' UTR (NM_007590, exon 6 of 6)	7288.0	NM_007590	12315.0	Mm.288630	NM_007590	ENSMUSG00000019370	Calm3	CaMA|Cam3|Camc|R75142	calmodulin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-7280080-3	chr7	7279960	7280160	+	612.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1771.0	NR_003555	76229.0	Mm.387947	NM_001113468	ENSMUSG00000095730	Vmn2r29	6430701C03Rik	vomeronasal 2, receptor 29	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-145888576-4	chr2	145888475	145888675	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_028724)	TTS (NM_028724)	-14666.0	NM_026425	67877.0	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	7.09186668898719	6.90157608626396	7.2194008020881	6.96139268185747	7.10185075903932	6.91268609571166	7.13365851321178	6.99691936062947	-0.00995982387189801	0.951947243465689	0.998431161219273
Merged-chr18-33720386-2	chr18	33720302	33720502	+	936.416626	f0_c57.idr|f1_c57bl6.idr	Intergenic	LTR33|LTR|ERVL	-74490.0	NR_038152	69749.0	Mm.248787	NR_038151	ENSMUSG00000087590	Epb41l4aos	2410004N09Rik|Epb4.1l4aos	erythrocyte membrane protein band 4.1 like 4a, opposite strand	ncRNA	4.36475468383212	3.97431338853675	3.95765768373249	4.44485997585942	1.83989217751728	2.74405630640024	1.47594865776026	1.41003409901079	-3.87161517914721	1.16756881207553e-07	9.95864261181196e-06
Merged-chr7-24885520-2	chr7	24885420	24885620	+	597.625	f1_balb.idr|f1_c57bl6.idr	exon (NM_001360119, exon 3 of 6)	exon (NM_001360119, exon 3 of 6)	607.0	NM_001360115	20085.0	Mm.300281	NM_023133	ENSMUSG00000040952	Rps19	Dsk3	ribosomal protein S19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80682318-2	chr10	80682218	80682418	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-6025.0	NM_021462	17347.0	Mm.42126	NM_021462	ENSMUSG00000020190	Mknk2	2010016G11Rik|Gprk7|Mnk2	MAP kinase-interacting serine/threonine kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65432434-4	chr9	65432320	65432520	+	752.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3362.0	NM_027134	69606.0	Mm.287956	NM_027134	ENSMUSG00000059183	Mtfmt	2310020P08Rik	mitochondrial methionyl-tRNA formyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-45812302-4	chr19	45812174	45812374	+	818.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001276358)	promoter-TSS (NM_001276358)	17.0	NM_001276358	80906.0	Mm.213204	NM_030716	ENSMUSG00000025221	Kcnip2	KChIP2	Kv channel-interacting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-103939755-3	chr11	103939647	103939847	+	911.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008740, intron 1 of 20)	L1M4|LINE|L1	14309.0	NM_008740	18195.0	Mm.260117	NM_008740	ENSMUSG00000034187	Nsf	AI316878|AU020090|AU067812|SKD2	N-ethylmaleimide sensitive fusion protein	protein-coding	-0.0676403333921155	-0.302861853768568	-0.306592228111011	-0.157190182053066	-0.0615605744828629	-0.302018156187101	0.235361851295625	-0.308956886103359	1.18586540716245	0.613040117576434	1
Merged-chr13-12939628-2	chr13	12939528	12939728	+	824.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A1|LTR|ERVL-MaLR	65702.0	NM_031191	18811.0	Mm.88796	NM_031191	ENSMUSG00000079092	Prl2c2	Ghd2|MRP-1|PLF-1|Plf|Plf1	prolactin family 2, subfamily c, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-8646275-2	chr4	8646178	8646378	+	573.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-44128.0	NM_001277149	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	1.21627075058568	1.34984594915324	1.69154258036355	1.64024276550596	1.35201468994235	1.17532405530812	0.937767830200488	1.83575536288097	-0.395789347070267	0.746540994215638	0.998431161219273
Merged-chr7-16315392-2	chr7	16315292	16315492	+	955.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_133234, intron 3 of 3)	B1_Mur4|SINE|Alu	5809.0	NM_133234	170770.0	Mm.7660	NM_133234	ENSMUSG00000002083	Bbc3	PUMA|PUMA/JFY1	BCL2 binding component 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-29505489-2	chr11	29505389	29505589	+	730.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_176841, intron 30 of 31)	intron (NM_176841, intron 30 of 31)	9544.0	NM_026465	67939.0	Mm.251087	NM_026465	ENSMUSG00000032673	Prorsd1	2010316F05Rik|Ncrna00117|Prdxdd1	prolyl-tRNA synthetase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-83006252-2	chr18	83006152	83006352	+	739.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001177464)	TTS (NM_001177464)	-85692.0	NR_033307	75853.0	Mm.420737	NR_033307		4930592I03Rik	-	RIKEN cDNA 4930592I03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-45451628-2	chr5	45451528	45451728	+	589.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1399.0	NM_024236	110391.0	Mm.30204	NM_024236	ENSMUSG00000015806	Qdpr	2610008L04Rik|D5Ertd371e|Dhpr|PKU2	quinoid dihydropteridine reductase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52605210-2	chr13	52605110	52605310	+	802.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011518, intron 1 of 13)	intron (NM_011518, intron 1 of 13)	8328.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-30354400-2	chr6	30354300	30354500	+	617.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	36620.0	NM_172735	232679.0	Mm.29780	NM_172735	ENSMUSG00000039130	Zc3hc1	1110054L24Rik|AU018540|AU019789|HSPC216|Nipa	zinc finger, C3HC type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-41068081-4	chr9	41067983	41068183	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176860, intron 1 of 13)	MLT1E3|LTR|ERVL-MaLR	11423.0	NM_001357412	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	4.07065214759548	4.26381037093291	2.73930163734953	4.31682139935434	3.2250088882474	4.04012817032079	3.4100829371513	4.2920731372705	-0.234291946728191	0.666273123735399	0.992515300319318
Merged-chr11-116869857-4	chr11	116869777	116869977	+	966.6083369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178620, intron 10 of 12)	intron (NM_178620, intron 10 of 12)	15877.0	NM_001361586	69900.0	Mm.348004	NM_178620	ENSMUSG00000020818	Mfsd11	2600014M03Rik	major facilitator superfamily domain containing 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-84107205-4	chr17	84107071	84107271	+	946.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1H|LTR|ERVL-MaLR	28511.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-22350258-2	chr4	22350158	22350358	+	545.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	IAP-d-int|LTR|ERVK	-7285.0	NR_104379	269514.0	Mm.40708	NM_172988	ENSMUSG00000040410	Fbxl4	AI836810|FBL4|FBL5	F-box and leucine-rich repeat protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-119883340-3	chr6	119883240	119883440	+	945.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19358.0	NM_001166382	19365.0	Mm.149	NM_011236	ENSMUSG00000030166	Rad52	Rad52yh	RAD52 homolog, DNA repair protein	protein-coding	2.33016019559026	3.2486593533571	2.22676420669439	2.58200039657218	2.84723005707171	3.49363392772084	2.24438353892741	2.80964124842775	0.49791051852098	0.501692753322222	0.938443375140454
Merged-chr11-97782459-4	chr11	97782364	97782564	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028078)	promoter-TSS (NR_028078)	-25.0	NM_022891	65019.0	Mm.140380	NM_022891	ENSMUSG00000071415	Rpl23	2810009A01Rik	ribosomal protein L23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-91065086-4	chr1	91064980	91065180	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008515, intron 1 of 22)	intron (NM_008515, intron 1 of 22)	11636.0	NM_001310732	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-101768794-2	chr13	101768694	101768894	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001077495)	promoter-TSS (NM_001077495)	-577.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-43072486-3	chr17	43072397	43072597	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178589, intron 4 of 5)	intron (NM_178589, intron 4 of 5)	55942.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	-0.918919911529996	-0.904045978146816	-0.912626963484136	-0.914993021245423	-0.250910483952844	-0.704998942498706	-0.911950517246838	-0.914579703111691	3.08549571023071	0.305375552116377	1
Merged-chr10-80403542-2	chr10	80403442	80403642	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025650, intron 2 of 2)	B3A|SINE|B2	3279.0	NM_025650	66594.0	Mm.379119	NM_025650	ENSMUSG00000020163	Uqcr11	0710008D09Rik|AL022707|Uqcr	ubiquinol-cytochrome c reductase, complex III subunit XI	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-20595622-3	chr10	20595478	20595678	+	903.0277710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013875, intron 2 of 12)	MER102b|DNA|hAT-Charlie	-47250.0	NM_001347366	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-35512154-2	chr13	35512054	35512254	+	793.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L4_C_Mam|LINE|RTE-X	-147708.0	NM_009881	12593.0	Mm.29002	NM_009881	ENSMUSG00000059288	Cdyl	AI325931	chromodomain protein, Y chromosome-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-120102949-4	chr5	120102849	120103049	+	825.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13564.0	NM_028762	74111.0	Mm.41022	NM_028762	ENSMUSG00000029594	Rbm19	1200009A02Rik|AV302714|NPO	RNA binding motif protein 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-102244038-2	chr11	102243938	102244138	+	579.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-4844.0	NM_153544	217216.0	Mm.247335	NM_153544	ENSMUSG00000034773	BC030867	-	cDNA sequence BC030867	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-136142297-4	chr4	136142219	136142419	+	918.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-1503.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-25403312-2	chr2	25403212	25403412	+	659.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008721, exon 1 of 9)	exon (NM_008721, exon 1 of 9)	262.0	NM_008721	18146.0	Mm.1131	NM_008721	ENSMUSG00000015094	Npdc1	AI314472|NPDC-1	neural proliferation, differentiation and control 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150965305-3	chr4	150965193	150965393	+	843.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-31804.0	NM_011910	24111.0	Mm.89984	NM_011910	ENSMUSG00000028963	Uts2	UII|Ucn2|prepro-UII	urotensin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95450651-2	chr3	95450551	95450751	+	763.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037737, intron 2 of 21)	intron (NM_001037737, intron 2 of 21)	16261.0	NM_001037737	11863.0	Mm.250265	NM_009709	ENSMUSG00000015522	Arnt	D3Ertd557e|Drnt|ESTM42|Hif1b|W08714|bHLHe2|mKIAA4051	aryl hydrocarbon receptor nuclear translocator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-102037705-4	chr5	102037580	102037780	+	960.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 2 of 66)	intron (NM_172882, intron 2 of 66)	32241.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	1.57067444532744	2.23567103734886	1.40692804846647	1.52553838618489	1.1351706057023	1.25716269582426	0.974969488867915	2.39577821440201	-0.344216648681041	0.77202274260449	0.998431161219273
Merged-chr3-90220894-3	chr3	90220846	90221046	+	702.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026677, exon 1 of 8)	exon (NM_026677, exon 1 of 8)	162.0	NM_026677	68328.0	Mm.29355	NM_026677	ENSMUSG00000027935	Rab13	0610007N03Rik|B230212B15Rik	RAB13, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-89143758-2	chr4	89143658	89143858	+	749.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_024433, intron 1 of 7)	intron (NM_024433, intron 1 of 7)	6388.0	NM_024433	66902.0	Mm.28500	NM_024433	ENSMUSG00000062937	Mtap	1300019I21Rik|MSAP	methylthioadenosine phosphorylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-105139962-1	chr13	105139862	105140062	+	767.5	f0_balb.idr	intron (NM_001360891, intron 7 of 7)	intron (NM_001360891, intron 7 of 7)	57840.0	NM_025751	66763.0	Mm.109093	NM_025751	ENSMUSG00000021718	4933425L06Rik	-	RIKEN cDNA 4933425L06 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-81050750-2	chr3	81050630	81050830	+	691.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_019971, intron 1 of 5)	intron (NM_019971, intron 1 of 5)	14314.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	-1.58994551673671	-1.55912852307891	-1.56844783632235	-1.57610299769523	-1.18549093183599	-1.55710898902261	-1.56633814807757	-1.57473272746952	1.78703309985663	0.610309988231842	1
Merged-chr8-84895598-1	chr8	84895498	84895698	+	730.0	f1_c57bl6.idr	Intergenic	Intergenic	-1677.0	NM_008097	270076.0	Mm.2475	NM_008097	ENSMUSG00000003809	Gcdh	9030411L18|AI266902|D17825|GCD	glutaryl-Coenzyme A dehydrogenase	protein-coding	1.67092402520279	1.00574281600439	2.03340145620924	0.970160154274391	2.10816317966044	1.01014197873618	1.71668318876444	1.88486798887782	0.698919394509246	0.586454695274101	0.967851916629803
Merged-chr7-132800808-2	chr7	132800708	132800908	+	921.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_212473, intron 1 of 4)	intron (NM_212473, intron 1 of 4)	12388.0	NM_212473	77938.0	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-152346464-4	chr3	152346350	152346550	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252486)	promoter-TSS (NM_001252486)	-28.0	NM_133247	170822.0	Mm.258320	NM_133247	ENSMUSG00000025437	Usp33	9830169D19Rik|AA409780|Vdu1	ubiquitin specific peptidase 33	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-105764852-3	chr9	105764771	105764971	+	848.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001102607, intron 10 of 36)	intron (NM_001102607, intron 10 of 36)	44777.0	NM_172927	245026.0	Mm.482507	NM_172927	ENSMUSG00000043719	Col6a6	E330019B14|E330026B02Rik	collagen, type VI, alpha 6	protein-coding	-0.534151606672702	-0.524314112320272	-0.527555758898001	-0.376758741944803	0.000555137521264848	-0.338657042007897	-0.526842347951799	-0.374179059424304	2.40471299716419	0.33151001439294	1
Merged-chr2-30716696-2	chr2	30716596	30716796	+	546.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4514.0	NR_037272	100526499.0		NR_037272	ENSMUSG00000093091	Mir3089	mir-3089|mmu-mir-3089	microRNA 3089	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-110655276-2	chr9	110655176	110655376	+	581.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1115.0	NM_183276	235627.0	Mm.335481	NM_183276	ENSMUSG00000056724	Nbeal2	1110014F23Rik|BC042396|mKIAA0540	neurobeachin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-79593675-1	chr3	79593575	79593775	+	552.0	f1_balb.idr	exon (NM_026352, exon 2 of 10)	exon (NM_026352, exon 2 of 10)	2338.0	NM_026352	67738.0	Mm.295252	NM_026352	ENSMUSG00000027804	Ppid	4930564J03Rik|CYP-40|Ppidl|Ppif	peptidylprolyl isomerase D (cyclophilin D)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-75781482-2	chr7	75781383	75781583	+	705.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66855.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-78923959-3	chr12	78923864	78924064	+	809.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17026.0	NM_013738	27260.0	Mm.103380	NM_013738	ENSMUSG00000021118	Plek2	-	pleckstrin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-59508751-2	chr13	59508643	59508843	+	599.0	f0_balb.idr|f1_balb.idr	intron (NM_001048008, intron 11 of 17)	intron (NM_001048008, intron 11 of 17)	35708.0	NM_001284221	67269.0	Mm.153008	NM_023328	ENSMUSG00000021557	Agtpbp1	1700020N17Rik|2310001G17Rik|2900054O13Rik|4930445M19Rik|5730402G09Rik|CCP1|Nna1|nmf243|pcd	ATP/GTP binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-115621373-2	chr12	115621273	115621473	+	948.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13B|LTR|ERVK	74421.0	NR_105810	102465205.0		NR_105810	ENSMUSG00000098336	Mir6388	Gm27925|mmu-mir-6388	microRNA 6388	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-58623602-2	chr9	58623502	58623702	+	886.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357751, intron 2 of 8)	intron (NM_001357751, intron 2 of 8)	41362.0	NM_001357751	20320.0	Mm.15125	NM_009145	ENSMUSG00000032336	Nptn	AW554172|SDR-1|Sdfr1	neuroplastin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-120914719-4	chr4	120914617	120914817	+	952.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10288.0	NM_028457	73172.0	Mm.151436	NM_028457	ENSMUSG00000028629	Exo5	3110037I16Rik|AV297100|Dem1|Exo V|mExo5	exonuclease 5	protein-coding	1.22004164978727	1.56597707985549	0.717994977855796	2.47559003344514	0.897443611235198	0.742907116686148	0.722562247319506	1.58203036302089	-2.01224008298015	0.150697650293835	0.602589676101411
Merged-chr6-91750147-2	chr6	91750047	91750247	+	900.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009320, intron 12 of 14)	intron (NM_009320, intron 12 of 14)	57246.0	NM_001159507	243547.0	Mm.333264	NM_001033353	ENSMUSG00000030098	Grip2	-	glutamate receptor interacting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30942230-2	chr2	30942130	30942330	+	811.099976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10771.0	NM_133673	30934.0	Mm.249164	NM_133673	ENSMUSG00000026848	Tor1b	2610016F05Rik|DQ1|torsinB	torsin family 1, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-28243242-4	chr5	28243145	28243345	+	822.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310512, intron 1 of 3)	intron (NM_001310512, intron 1 of 3)	2543.0	NM_001310512	269637.0	Mm.68286	NM_175651	ENSMUSG00000044681	Cnpy1	1500012D20Rik|9630008K15Rik|AI853839	canopy FGF signaling regulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36546727-2	chr1	36546627	36546827	+	900.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026241, intron 1 of 3)	intron (NM_026241, intron 1 of 3)	525.0	NM_001310533	109346.0	Mm.247537	NM_026241	ENSMUSG00000079610	Ankrd39	9130416N05Rik|C030004B10Rik	ankyrin repeat domain 39	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19359575-4	chr7	19359452	19359652	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145822)	promoter-TSS (NM_145822)	-69.0	NM_145822	70333.0	Mm.171370	NM_145822	ENSMUSG00000047649	Cd3eap	1190028F09|2610103M17Rik|ASE-1|Ase1|CAST|PAF49	CD3E antigen, epsilon polypeptide associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-107754905-4	chr5	107754795	107754995	+	985.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007964, intron 17 of 17)	intron (NM_007964, intron 17 of 17)	-29090.0	NM_001267621	14581.0	Mm.2078	NM_010278	ENSMUSG00000029275	Gfi1	AW495828|Gfi-1|Pal-1|Pal1	growth factor independent 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-93497103-3	chr13	93496997	93497197	+	740.866699	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021310, intron 1 of 10)	intron (NM_021310, intron 1 of 10)	2711.0	NM_021310	57748.0	Mm.100273	NM_021310	ENSMUSG00000021690	Jmy	-	junction-mediating and regulatory protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76770600-6	chr15	76770510	76770710	+	996.966675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198420, intron 1 of 10)	Lx7|LINE|L1	-46765.0	NM_176828	223665.0	Mm.291713	NM_145472	ENSMUSG00000116138	C030006K11Rik	1110033I13Rik	RIKEN cDNA C030006K11 gene	protein-coding	3.3216763628825	2.8151396873743	3.71800145136805	1.73943961437918	3.51804877490321	1.57770849034934	3.85483281290133	2.35733508463983	0.0552232063614619	0.947482955462973	0.998431161219273
Merged-chr2-50690294-4	chr2	50690183	50690383	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-219401.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-72810840-4	chr15	72810735	72810935	+	937.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_002864)	promoter-TSS (NR_002864)	-511.0	NR_002864	353342.0	Mm.440245	NR_002864	ENSMUSG00000106847	Peg13	-	paternally expressed 13	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-125409902-2	chr5	125409801	125410001	+	688.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19884.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	-0.253388815801523	-0.712469485000288	-0.71573975734073	-0.718258518408392	-0.721811212932892	-0.211908210509453	-0.715019015619025	-0.71781877470079	0.146978929795768	0.96038749539526	1
Merged-chr4-151861978-4	chr4	151861875	151862075	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001195565)	promoter-TSS (NM_001195565)	-207.0	NM_001195565	100072.0	Mm.318846	NM_001081557	ENSMUSG00000014592	Camta1	1810059M14Rik|2310058O09Rik|AI316882|AW987475|mKIAA0833	calmodulin binding transcription activator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-20348133-4	chr14	20348006	20348206	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360365)	promoter-TSS (NM_001360365)	15.0	NM_027475	70601.0	Mm.35105	NM_027475	ENSMUSG00000021810	Ecd	5730461K03Rik|Hsgt1	ecdysoneless cell cycle regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-59769874-4	chr13	59769770	59769970	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015349)	promoter-TSS (NR_015349)	-81.0	NM_026921	69046.0	Mm.7884	NM_026921	ENSMUSG00000044792	Isca1	1810010A06Rik|Hbld2	iron-sulfur cluster assembly 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-109618900-2	chr7	109618800	109619000	+	690.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1753.0	NM_029811	76954.0	Mm.252009	NM_029811	ENSMUSG00000031024	St5	2010004M01Rik|2610305K15Rik	suppression of tumorigenicity 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-103223600-4	chr11	103223496	103223696	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016896, intron 14 of 15)	intron (NM_016896, intron 14 of 15)	-5164.0	NM_177801	328019.0	Mm.189646	NM_177801	ENSMUSG00000044787	Spata32	4933400C05Rik|VAD1.2	spermatogenesis associated 32	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56586603-2	chr17	56586503	56586703	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163300, intron 1 of 20)	intron (NM_001163300, intron 1 of 20)	1621.0	NM_001163300	224903.0	Mm.255066	NM_001163300	ENSMUSG00000071054	Safb	3110021E02Rik|5330423C17Rik|AU018122|D18386|E130307D12|HAP|HET|SAF-B1|SAFB1	scaffold attachment factor B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-149842032-4	chr1	149841934	149842134	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008869, intron 16 of 17)	intron (NM_008869, intron 16 of 17)	80405.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19229898-2	chr7	19229798	19229998	+	802.900024	f1_balb.idr|f1_c57bl6.idr	intron (NM_207525, intron 1 of 1)	B1F1|SINE|Alu	1509.0	NM_207525	403187.0	Mm.239583	NM_207525	ENSMUSG00000052214	Opa3	D630048P19Rik|Gm1425|Gm472	optic atrophy 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-124231303-4	chr8	124231209	124231409	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_139272)	promoter-TSS (NM_139272)	-85.0	NM_139272	108148.0	Mm.33808	NM_139272	ENSMUSG00000089704	Galnt2	AI480629	polypeptide N-acetylgalactosaminyltransferase 2	protein-coding	2.79375899731565	2.75800088451281	1.45768383225867	3.01739463212358	2.25288078378287	3.15503180843507	2.57179669528597	2.07751389420577	-0.106749200595237	0.899572686780636	0.998431161219273
Merged-chr9-120927414-4	chr9	120927321	120927521	+	972.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040753, intron 2 of 2)	intron (NR_040753, intron 2 of 2)	3381.0	NR_040753	78060.0	Mm.463884	NR_040753	ENSMUSG00000086365	4930593C16Rik	-	RIKEN cDNA 4930593C16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-121317136-4	chr9	121317072	121317272	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152160, intron 1 of 17)	intron (NR_152160, intron 1 of 17)	19670.0	NR_152160	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-99428526-4	chr10	99428402	99428602	+	758.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	165271.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-98807951-4	chr15	98807783	98807983	+	950.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001013741)	promoter-TSS (NM_001013741)	42.0	NM_001013741	13199.0	Mm.390810	NM_001013741	ENSMUSG00000059213	Ddn	Gm748	dendrin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-64867051-3	chr14	64866945	64867145	+	918.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177338, intron 4 of 9)	intron (NM_177338, intron 4 of 9)	82812.0	NM_177338	219150.0	Mm.344074	NM_177338	ENSMUSG00000021972	Hmbox1	AI451877|AI604847|F830020C16Rik	homeobox containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-79559004-2	chr14	79558904	79559104	+	928.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007920, intron 2 of 8)	B3|SINE|B2	-28656.0	NM_026474	67955.0	Mm.18972	NM_026474	ENSMUSG00000022024	Sugt1	2410174K12Rik|SGT1	SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-75704635-4	chr7	75704527	75704727	+	926.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 17 of 36)	intron (NM_029332, intron 17 of 36)	-143711.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81287234-2	chr10	81287134	81287334	+	820.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001282095, intron 1 of 20)	intron (NM_001282095, intron 1 of 20)	-1453.0	NM_001282096	27375.0	Mm.27984	NM_013769	ENSMUSG00000034917	Tjp3	-	tight junction protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-123853045-4	chr9	123852943	123853143	+	996.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011798, exon 2 of 2)	3' UTR (NM_011798, exon 2 of 2)	-1144.0	NM_001110253	17281.0	Mm.252941	NM_148925	ENSMUSG00000025241	Fyco1	2810409M01Rik|Mem2|RUFY3|ZFYVE7	FYVE and coiled-coil domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-69189665-4	chr8	69189577	69189777	+	886.1749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19369.0	NM_001013379	234358.0	Mm.334577	NM_001013379	ENSMUSG00000059897	Zfp930	-	zinc finger protein 930	protein-coding	3.25175797035254	3.27054482232202	3.4430815578233	2.55466012662043	3.77252005199627	3.05374763668621	4.301978912874	3.52057156736426	0.888910954009312	0.124637455814917	0.553032616445036
Merged-chr13-23524250-2	chr13	23524150	23524350	+	643.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6794.0	NM_153173	69386.0	Mm.158272	NM_153173	ENSMUSG00000060981	Hist1h4h	1700024H08Rik	histone cluster 1, H4h	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-108477786-3	chr6	108477681	108477881	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 46 of 61)	L2c|LINE|L2	-11962.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129787111-1	chr4	129787011	129787211	+	906.3333130000001	f1_c57bl6.idr	Intergenic	AT_rich|Low_complexity|Low_complexity	-33368.0	NM_008974	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	-1.52696403314699	-1.49523967873556	-1.5048333853602	-1.51271394162622	-1.52473704212565	-1.49316068248889	-1.50266158046844	-1.06847079017215	2.01069003169785	0.564432837776867	1
Merged-chr11-69995618-4	chr11	69995522	69995722	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291125)	promoter-TSS (NM_001291125)	-144.0	NM_001291125	78246.0	Mm.20805	NM_030064	ENSMUSG00000018572	Phf23	JUNE-1	PHD finger protein 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-29796789-2	chr11	29796705	29796905	+	805.0	f0_balb.idr|f1_balb.idr	intron (NM_146016, intron 21 of 41)	RodERV21-int|LTR|ERV1	28863.0	NM_176829	216622.0	Mm.443260	NM_176829	ENSMUSG00000078157	4931440F15Rik	Fem1ab	RIKEN cDNA 4931440F15 gene	protein-coding	2.43849879743239	2.28538956071209	2.67140430294502	1.68709634853171	3.37387676760387	3.50247635582145	4.25487777709992	1.93612794620084	2.03797005496437	0.00807639820797847	0.0934732723787708
Merged-chr5-123049392-4	chr5	123049254	123049454	+	870.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2338.0	NM_001347456	74890.0	Mm.141383	NM_029112	ENSMUSG00000029477	Morn3	4930438O03Rik	MORN repeat containing 3	protein-coding	2.07781381429553	3.00932006962823	2.72960764573911	2.74300288546009	3.03879379168939	2.18648705894134	1.44581833153078	2.33732379587	-0.58130406471485	0.498423648032772	0.937121854747785
Merged-chr10-51524136-2	chr10	51524036	51524236	+	903.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR15|LTR|ERVK	33238.0	NM_013532	14728.0	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-146940356-2	chr5	146940256	146940456	+	572.583374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8301.0	NM_025652	66596.0	Mm.196528	NM_025652	ENSMUSG00000016503	Gtf3a	2010015D03Rik|2610111I01Rik|5330403M05Rik	general transcription factor III A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-48130983-1	chr14	48130883	48131083	+	699.0	f0_balb.idr	intron (NM_033602, intron 1 of 5)	intron (NM_033602, intron 1 of 5)	10114.0	NM_033602	93834.0	Mm.296457	NM_033602	ENSMUSG00000021846	Peli2	AW047589|BB129927	pellino 2	protein-coding	0.555101046799937	0.856511992084198	0.588493902079125	0.576182590729208	1.73036017312661	1.39394225496259	0.591963435562874	1.84681072509244	4.25549175024235	0.00936975022467504	0.104090984440418
Merged-chr4-59810980-2	chr4	59810880	59811080	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172468, intron 1 of 8)	B1_Mus2|SINE|Alu	5330.0	NM_172468	209131.0	Mm.259705	NM_172468	ENSMUSG00000028385	Snx30	4732481H14Rik|C030041J06Rik	sorting nexin family member 30	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-103341834-4	chr12	103341730	103341930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023049, intron 2 of 9)	intron (NM_023049, intron 2 of 9)	14171.0	NM_023049	65256.0	Mm.27159	NM_023049	ENSMUSG00000021200	Asb2	1110008E15Rik	ankyrin repeat and SOCS box-containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127323639-4	chr10	127323520	127323720	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359656)	promoter-TSS (NM_001359656)	-87.0	NM_146011	216445.0	Mm.227198	NM_146011	ENSMUSG00000040345	Arhgap9	AU043488	Rho GTPase activating protein 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80271361-2	chr10	80271261	80271461	+	878.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_133188, intron 1 of 11)	intron (NM_133188, intron 1 of 11)	6370.0	NM_133188	70248.0	Mm.148693	NM_133188	ENSMUSG00000069565	Dazap1	2410042M16Rik|mPrrp	DAZ associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-54954273-4	chr11	54954165	54954365	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271456, intron 1 of 18)	intron (NM_001271456, intron 1 of 18)	8675.0	NM_021327	57783.0	Mm.259671	NM_021327	ENSMUSG00000020400	Tnip1	ABIN|ABIN-1|ABIN1|AU018810|Naf1|Nef|VAN	TNFAIP3 interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-72272610-4	chr8	72272509	72272709	+	997.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32591.0	NM_007456	11767.0	Mm.290086	NM_007456	ENSMUSG00000003033	Ap1m1	AA408894|AP47|Adtm1A|Cltnm|mu1A	adaptor-related protein complex AP-1, mu subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-63556923-4	chr4	63556827	63557027	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1836.0	NM_001356355	230279.0	Mm.41523	NM_144905	ENSMUSG00000045917	Tmem268	6330416G13Rik|AW492431|bM230C2.2	transmembrane protein 268	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-100150749-4	chr15	100150642	100150842	+	901.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_037311, intron 1 of 3)	intron (NR_037311, intron 1 of 3)	-3654.0	NM_172819	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-98971659-1	chr7	98971559	98971759	+	573.0	f1_c57bl6.idr	intron (NM_178635, intron 12 of 14)	intron (NM_178635, intron 12 of 14)	132814.0	NM_001285795	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	-0.101767147840961	0.789761955576	-0.0890581460019225	-0.0938162880894545	-0.100580177275015	0.13201282601058	-0.0877021038325251	0.487870525779123	-0.461674851687876	0.838665763138474	1
Merged-chr12-69583092-4	chr12	69582985	69583185	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033236)	promoter-TSS (NM_001033236)	-57.0	NM_001033236	207965.0	Mm.102487	NM_001033236	ENSMUSG00000049882	Vcpkmt	Gm71|Mettl21d|Mettl221d|VCP-KMT	valosin containing protein lysine (K) methyltransferase	protein-coding	5.79876916212402	5.5871766113573	6.05319427786573	6.2388597483252	7.02117208252657	6.4490627285851	6.29900696448629	6.92744107470518	0.83299350243854	0.000482666665667423	0.0108311121970282
Merged-chr1-71938724-4	chr1	71938632	71938832	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50620.0	NR_027658	667931.0	Mm.214128	NR_027658	ENSMUSG00000099707	Gm8883	EG667931|Gm554	predicted gene 8883	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-56382590-2	chr14	56382490	56382690	+	915.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_138652, exon 15 of 23)	exon (NM_138652, exon 15 of 23)	17522.0	NM_138652	192113.0	Mm.273271	NM_138652	ENSMUSG00000022229	Atp12a	Atp1al1|HKalpha2|cHKA	ATPase, H+/K+ transporting, nongastric, alpha polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-48465142-3	chr14	48465046	48465246	+	721.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310584, intron 4 of 16)	intron (NM_001310584, intron 4 of 16)	18794.0	NR_132324	218989.0	Mm.85211	NM_172600	ENSMUSG00000036339	Tmem260	5930435P15|6720456H20Rik	transmembrane protein 260	protein-coding	0.516468616967396	1.19888390301408	0.727186771947989	0.706989329828103	1.13450190070706	1.32424977492249	0.538063480868159	0.710535760283063	0.762109252813102	0.626522537041163	1
Merged-chr16-45178132-1	chr16	45178032	45178232	+	544.0	f1_balb.idr	intron (NM_001356366, intron 5 of 10)	L2a|LINE|L2	19303.0	NM_026402	67841.0	Mm.41775	NM_026402	ENSMUSG00000022663	Atg3	2610016C12Rik|APG3|Apg3l|Atg3l|PC3-96	autophagy related 3	protein-coding	-0.862030634104754	-0.846340151604894	-0.851500953857566	-0.855415204408448	-0.861037010143218	-0.845072134051678	0.297607450125457	-0.854727637484263	3.74638014297664	0.190525819776624	1
Merged-chr4-135895455-2	chr4	135895355	135895555	+	886.6666869999999	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_009924, exon 1 of 2)	5' UTR (NM_009924, exon 1 of 2)	266.0	NM_009924	12802.0	Mm.297251	NM_009924	ENSMUSG00000062585	Cnr2	CB-2|CB2|CB2-R	cannabinoid receptor 2 (macrophage)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-47396440-3	chr14	47396324	47396524	+	876.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144553, intron 13 of 18)	intron (NM_144553, intron 13 of 18)	21983.0	NM_144553	218977.0	Mm.240543	NM_144553	ENSMUSG00000037544	Dlgap5	C77459|C86398|Dap-5|Dlg7|Hurp|mKIAA0008	DLG associated protein 5	protein-coding	0.393409802227711	0.422042180048722	0.914910820134048	1.27893870646557	0.395226436615859	0.424119531327419	1.16057508129021	0.749725440560203	-0.425184795809276	0.813162974614519	1
Merged-chr7-100894787-3	chr7	100894690	100894890	+	737.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081116, intron 1 of 20)	CpG	-12381.0	NR_037289	100526508.0		NR_037289	ENSMUSG00000093296	Mir3102	mmu-mir-3102	microRNA 3102	ncRNA	0.0101752625944133	-0.124403300282572	0.569072746694767	-0.13427595146878	-0.14038478315811	-0.123151566358983	0.581885014133926	-0.133522535155584	-0.167921404749877	0.942092978830049	1
Merged-chr19-46979661-6	chr19	46979507	46979707	+	963.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164363, intron 1 of 17)	intron (NM_001164363, intron 1 of 17)	-10040.0	NM_001164365	76952.0	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-107449911-3	chr13	107449798	107449998	+	904.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19924.0	NR_045083	105120.0	Mm.417700	NR_045083	ENSMUSG00000114780	AI197445	-	expressed sequence AI197445	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-132346553-2	chr1	132346453	132346653	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21395.0	NM_001311108	68875.0	Mm.273785	NM_178874	ENSMUSG00000042066	Tmcc2	1110063G11Rik	transmembrane and coiled-coil domains 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-75002601-2	chr18	75002432	75002632	+	777.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001002239, intron 5 of 6)	intron (NM_001002239, intron 5 of 6)	1464.0	NR_028552	100217457.0		NR_028552	ENSMUSG00000064871	Snord58b	MBII-199	small nucleolar RNA, C/D box 58B	snoRNA	-0.138555282940293	0.0848528662092789	-0.126726332416913	-0.131159697416275	-0.137452224535349	0.650109229283937	0.485257933876834	-0.130384055650481	3.11464767143069	0.174386118946864	1
Merged-chr13-85295251-2	chr13	85295151	85295351	+	791.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5765.0	NM_145452	218397.0	Mm.259653	NM_145452	ENSMUSG00000021549	Rasa1	Gap|RasGAP|Rasa	RAS p21 protein activator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-67340513-4	chr17	67340426	67340626	+	949.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	ID_B1|SINE|B4	13933.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64379143-4	chr5	64379037	64379237	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	88805.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-72225996-4	chr1	72225914	72226114	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-13700.0	NM_001357488	381269.0	Mm.422636	NM_001005423	ENSMUSG00000039395	Mreg	Gm974|Wdt2|dsu	melanoregulin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-73387961-2	chr14	73387861	73388061	+	756.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-2672.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118686604-2	chr9	118686503	118686703	+	700.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 13 of 27)	intron (NM_133721, intron 13 of 27)	-25089.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	-1.18378942727406	-1.15669478905697	-0.457913181653105	-1.17806440097404	-1.18323730008524	-1.15415234459186	-1.16577117532349	-1.17633933179771	-2.81844548480871	0.412768592413622	1
Merged-chr13-45330641-1	chr13	45330541	45330741	+	790.0	f0_balb.idr	Intergenic	Intergenic	-59101.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101029581-4	chr7	101029473	101029673	+	961.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17520.0	NM_001302346	18442.0	Mm.3000	NM_008773	ENSMUSG00000032860	P2ry2	P2U1|P2Y2	purinergic receptor P2Y, G-protein coupled 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35051381-4	chr17	35051261	35051461	+	851.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033444, intron 1 of 5)	intron (NM_033444, intron 1 of 5)	1118.0	NM_033444	114584.0	Mm.29524	NM_033444	ENSMUSG00000007041	Clic1	Clcp|G6	chloride intracellular channel 1	protein-coding	3.88760011888364	4.22914831788109	2.8181940283071	2.26827407974269	4.03784027993353	2.80424313275876	2.15856135499103	2.87018269876231	-0.543220135599069	0.457340049938851	0.919462395309797
Merged-chr14-54433172-2	chr14	54433072	54433272	+	572.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008608, intron 1 of 9)	intron (NM_008608, intron 1 of 9)	1574.0	NM_008608	17387.0	Mm.280175	NM_008608	ENSMUSG00000000957	Mmp14	AI325305|MMP-X1|MT-MMP-1|MT1-MMP|sabe	matrix metallopeptidase 14 (membrane-inserted)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-14636941-5	chr19	14636862	14637062	+	627.733337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38779.0	NM_001302947	21888.0	Mm.103638	NM_011600	ENSMUSG00000024642	Tle4	5730411M05Rik|AA792082|Bce-1|Bce1|ESTM13|ESTM14|Grg4|X83332|X83333|grg-4	transducin-like enhancer of split 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-31761861-4	chr2	31761751	31761951	+	968.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001283045, intron 1 of 10)	intron (NM_001283045, intron 1 of 10)	1678.0	NM_001283045	11350.0	Mm.1318	NM_009594	ENSMUSG00000026842	Abl1	AI325092|Abl|E430008G22Rik|c-Abl	c-abl oncogene 1, non-receptor tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-45051594-2	chr2	45051494	45051694	+	958.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355291, intron 2 of 9)	intron (NM_001355291, intron 2 of 9)	-28417.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-25241147-7	chr8	25241030	25241230	+	952.9285890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39588.0	NM_177089	320165.0	Mm.308452	NM_177089	ENSMUSG00000065954	Tacc1	4833447E04Rik|AA960202|B230378H13Rik	transforming, acidic coiled-coil containing protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-14443530-3	chr11	14443427	14443627	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR10-int|LTR|ERVK	155698.0	NR_045918	73307.0	Mm.399291	NR_045918	ENSMUSG00000085561	1700046C09Rik	-	RIKEN cDNA 1700046C09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10841820-4	chr19	10841716	10841916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023044)	promoter-TSS (NM_023044)	-728.0	NM_023044	65221.0	Mm.27387	NM_023044	ENSMUSG00000024737	Slc15a3	Ci1|cI-1	solute carrier family 15, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-88622781-4	chr10	88622703	88622903	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17651.0	NM_175418	109272.0	Mm.147208	NM_175418	ENSMUSG00000020061	Mybpc1	8030451F13Rik	myosin binding protein C, slow-type	protein-coding	2.13637702408962	2.24109467929911	1.46713882493171	3.28464084150852	3.01837766502258	3.44968620447852	2.74042916031116	2.53928544216517	0.953202901770309	0.245834901392476	0.74520645449897
Merged-chr5-142900316-2	chr5	142900216	142900416	+	685.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5078.0	NM_001033312	231863.0	Mm.89753	NM_001033312	ENSMUSG00000066640	Fbxl18	AI427077|B130019G13Rik|C330021B20Rik	F-box and leucine-rich repeat protein 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-117557411-1	chr4	117557311	117557511	+	544.0	f0_balb.idr	intron (NM_001356405, intron 2 of 8)	L2c|LINE|L2	7046.0	NM_080469	140546.0	Mm.235891	NM_080469	ENSMUSG00000033423	Eri3	PINT1|Prnpip1	exoribonuclease 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-35146564-1	chr7	35146464	35146664	+	576.0	f1_balb.idr	Intergenic	Intergenic	27271.0	NM_007678	12606.0	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	0.780399249083888	1.66024882743758	0.82632550447938	1.77558150946022	2.09137750078851	0.852096157043058	0.831047481790433	2.21640651567961	0.935756667703599	0.517250852747165	0.947641799425091
Merged-chr6-73748571-1	chr6	73748471	73748671	+	685.0	f0_balb.idr	Intergenic	Intergenic	-277550.0	NR_108032	73408.0	Mm.233629	NR_108032	ENSMUSG00000107408	1700065L07Rik	-	RIKEN cDNA 1700065L07 gene	ncRNA	2.87421498511177	3.23500870843019	1.59539452646504	3.44124234504519	1.86791868025104	1.91397069178794	2.61408360815757	1.2789248402331	-1.89527532741321	0.0371972452557005	0.274472662102026
Merged-chr2-142340480-2	chr2	142340380	142340580	+	563.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013802, intron 16 of 18)	intron (NM_001013802, intron 16 of 18)	560984.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-47355549-1	chr19	47355449	47355649	+	582.0	f1_balb.idr	intron (NM_008018, intron 5 of 14)	intron (NM_008018, intron 5 of 14)	-81960.0	NR_105961	102466782.0		NR_105961	ENSMUSG00000098786	Mir6995	Gm27576|mmu-mir-6995	microRNA 6995	ncRNA	0.470773137205078	0.367220099054953	-0.000313609116625146	-0.00474014114007595	0.800375861296508	0.00670249610745299	0.000950470663926006	-0.00396630018842528	0.257196037736598	0.908466986617745	1
Merged-chr5-114769727-3	chr5	114769632	114769832	+	918.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_019834, exon 2 of 19)	exon (NM_019834, exon 2 of 19)	3759.0	NM_019834	26431.0	Mm.195632	NM_019834	ENSMUSG00000041890	Git2	1500036H07Rik|5830420E16Rik|6430510B20Rik|9630056M03Rik|B230104M05Rik|CAT2|mKIAA0148	G protein-coupled receptor kinase-interactor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-137405397-4	chr7	137405288	137405488	+	915.43335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029886, intron 1 of 3)	L1MEc|LINE|L1	5368.0	NM_029886	77252.0	Mm.29184	NM_029886	ENSMUSG00000040139	9430038I01Rik	-	RIKEN cDNA 9430038I01 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-98508203-2	chr15	98508103	98508303	+	558.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	10729.0	NM_001001807	258502.0	Mm.377539	NM_001001807	ENSMUSG00000054036	Olfr279	MOR122-1|Olfr234|Olfr234-ps1|Olfr279-ps1	olfactory receptor 279	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-108692432-4	chr8	108692340	108692540	+	840.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17A2|LTR|ERVK	-22204.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-149701596-4	chr4	149701524	149701724	+	986.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001029837)	promoter-TSS (NM_001029837)	5.0	NM_001029837	18707.0	Mm.229108	NM_008840	ENSMUSG00000039936	Pik3cd	2410099E07Rik|2610208K16Rik|AW545373|p110delta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding	3.92368397096632	4.4128096893947	2.98501759658268	4.38276871477316	3.34599425669233	3.75460451307818	2.71376241537041	3.43553802677717	-0.981798762297866	0.0762455029836648	0.418861513185902
Merged-chr13-9472864-4	chr13	9472754	9472954	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081426, intron 1 of 36)	intron (NM_001081426, intron 1 of 36)	196329.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-105893395-4	chr3	105893325	105893525	+	881.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027025, intron 1 of 6)	intron (NM_027025, intron 1 of 6)	-10996.0	NM_009631	11542.0	Mm.235024	NM_009631	ENSMUSG00000000562	Adora3	A3AR|A3R|AA3R|ARA3|Gpcr2	adenosine A3 receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-23575748-4	chr13	23575640	23575840	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178204)	promoter-TSS (NM_178204)	-23.0	NM_178204	319149.0	Mm.347699	NM_178204	ENSMUSG00000099583	Hist1h3d	H3-b	histone cluster 1, H3d	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-152816449-1	chr2	152816349	152816549	+	672.0	f0_balb.idr	intron (NM_009743, intron 2 of 2)	intron (NM_009743, intron 2 of 2)	12040.0	NR_149254	12048.0	Mm.238213	NM_009743	ENSMUSG00000007659	Bcl2l1	Bcl(X)L|Bcl-XL|Bcl2l|BclX|bcl-x|bcl2-L-1	BCL2-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5922083-1	chr19	5921983	5922183	+	548.0	f1_balb.idr	intron (NM_026772, intron 1 of 1)	intron (NM_026772, intron 1 of 1)	2733.0	NM_026772	104252.0	Mm.491103	NM_026772	ENSMUSG00000045664	Cdc42ep2	1110008C05Rik|Borg1|Cep2|D19Bwg1013e	CDC42 effector protein (Rho GTPase binding) 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-67381685-1	chr7	67381585	67381785	+	959.0	f1_balb.idr	Intergenic	MER44B|DNA|TcMar-Tigger	-8827.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	-0.293572540194928	0.141549540971897	-0.28729801339784	-0.289675058438074	-0.0603893609605756	0.149557350519948	-0.28661444761717	-0.289261379540864	0.604189256187253	0.80891840382387	1
Merged-chr13-114376718-4	chr13	114376624	114376824	+	868.8583369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010887, intron 1 of 4)	L1MD2|LINE|L1	11370.0	NM_010887	17993.0	Mm.253142	NM_010887	ENSMUSG00000021764	Ndufs4	6720411N02Rik|C1-18k	NADH dehydrogenase (ubiquinone) Fe-S protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-160731341-4	chr2	160731304	160731504	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021280)	promoter-TSS (NM_021280)	94.0	NM_021280	18803.0	Mm.44463	NM_021280	ENSMUSG00000016933	Plcg1	AI894140|Cded|Plc-1|Plc-gamma1|Plcg-1	phospholipase C, gamma 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-82340365-2	chr15	82340265	82340465	+	646.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177391)	promoter-TSS (NM_177391)	-487.0	NM_001357717	338368.0	Mm.444916	NM_177391	ENSMUSG00000049687	Fam109b	C920005C14Rik|IPIP27B|Ses2	family with sequence similarity 109, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85487954-4	chr12	85487889	85488089	+	948.716675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14099.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-26658229-2	chr19	26658129	26658329	+	865.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_011416, intron 9 of 32)	MTD|LTR|ERVL-MaLR	53069.0	NM_011416	67155.0	Mm.491146	NM_011416	ENSMUSG00000024921	Smarca2	2610209L14Rik|SNF2alpha|Snf2l2|brahma|brm	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-59239591-4	chr19	59239459	59239659	+	911.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19911.0	NM_207261	332396.0	Mm.329947	NM_207261	ENSMUSG00000040901	Kcnk18	Gm781|Tresk|Tresk-2|Trik	potassium channel, subfamily K, member 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-74847787-4	chr14	74847677	74847877	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033439, intron 2 of 19)	ORR1D1|LTR|ERVL-MaLR	100100.0	NM_001252132	380916.0	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-57584151-1	chr10	57584051	57584251	+	597.0	f0_balb.idr	Intergenic	B3|SINE|B2	-47830.0	NM_008863	18768.0	Mm.262135	NM_008863	ENSMUSG00000019876	Pkib	Pkibeta|Prkacn2	protein kinase inhibitor beta, cAMP dependent, testis specific	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-65832391-4	chr5	65832279	65832479	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31190.0	NM_001081105	74734.0	Mm.20323	NM_001081105	ENSMUSG00000029204	Rhoh	5830400A04Rik|AU019774|Arhh	ras homolog family member H	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-34675789-2	chr7	34675689	34675889	+	709.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_175140, exon 4 of 4)	exon (NM_175140, exon 4 of 4)	-20280.0	NM_001360818	233107.0	Mm.76761	NM_146188	ENSMUSG00000030499	Kctd15	BC031749	potassium channel tetramerisation domain containing 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-78588631-4	chr9	78588539	78588739	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001276452)	promoter-TSS (NM_001276452)	-594.0	NM_001276452	235504.0	Mm.46932	NM_172773	ENSMUSG00000049624	Slc17a5	4631416G20Rik|4732491M05|AST|ISSD|NSD|SD|SIALIN|SIASD|SLD	solute carrier family 17 (anion/sugar transporter), member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-119341656-2	chr8	119341556	119341756	+	590.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-2882.0	NM_024219	68196.0	Mm.358714	NM_024219	ENSMUSG00000031839	Hsbp1	0610007A03Rik|AA408769|Hsp25	heat shock factor binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-78235133-2	chr16	78235033	78235233	+	689.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20321.0	NR_045698	100503619.0	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105637253-1	chr8	105637153	105637353	+	872.5	f0_balb.idr	promoter-TSS (NR_151743)	promoter-TSS (NR_151743)	97.0	NR_151743	546100.0	Mm.471801	NR_151742	ENSMUSG00000098120	Gm5914	-	predicted gene 5914	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45434686-4	chr7	45434562	45434762	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011304)	promoter-TSS (NM_011304)	-177.0	NM_030678	14936.0	Mm.275654	NM_030678	ENSMUSG00000003865	Gys1	Gys3|MGS	glycogen synthase 1, muscle	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-92263641-1	chr4	92263541	92263741	+	556.0	f1_balb.idr	Intergenic	Lx3C|LINE|L1	-116420.0	NM_027034	69314.0	Mm.55891	NM_027034	ENSMUSG00000028533	Izumo3	1700011H22Rik	IZUMO family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-5116584-2	chr9	5116484	5116684	+	651.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3A|LINE|L1	-181933.0	NM_009807	12362.0	Mm.1051	NM_009807	ENSMUSG00000025888	Casp1	ICE|Il1bc	caspase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-118973915-2	chr10	118973815	118974015	+	548.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46772.0	NR_110482	216377.0	Mm.208936	NR_110482	ENSMUSG00000112854	Gm38403	C230029M16	predicted gene, 38403	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-99596192-2	chr10	99596092	99596292	+	669.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	-12979.0	NR_038019	100504202.0	Mm.403801	NR_038019	ENSMUSG00000111962	Gm20110	-	predicted gene, 20110	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-24911001-2	chr16	24910901	24911101	+	594.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 10 of 12)	intron (NM_178665, intron 10 of 12)	-148638.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76294307-2	chr15	76294207	76294407	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001195537)	promoter-TSS (NM_001195537)	-127.0	NM_001195537	100503915.0	Mm.393455	NM_001195537	ENSMUSG00000071724	Smpd5	Gm10345|MA-nSMase	sphingomyelin phosphodiesterase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44076908-4	chr9	44076795	44076995	+	976.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198092, intron 2 of 12)	intron (NM_198092, intron 2 of 12)	7466.0	NM_016808	53376.0	Mm.272770	NM_016808	ENSMUSG00000032010	Usp2	B930035K21Rik|Ubp41	ubiquitin specific peptidase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-35302433-2	chr11	35302333	35302533	+	940.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011412, intron 4 of 35)	MIRc|SINE|MIR	180977.0	NM_011412	20564.0	Mm.478604	NM_011412	ENSMUSG00000056427	Slit3	Slil2|Slit1|b2b2362.1Clo	slit guidance ligand 3	protein-coding	-1.50561175621786	-1.47331375025452	-1.02203377115094	-1.49110398925286	-1.50334449591826	-1.47119716082604	-1.48086985756939	-1.48966786617048	-2.07776723614574	0.550394407909386	1
Merged-chr14-14603669-4	chr14	14603566	14603766	+	883.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-99359.0	NM_001360505	218756.0	Mm.258893	NM_001033270	ENSMUSG00000021733	Slc4a7	E430014N10Rik|NBC3|NBCn1|NBCn1-G|Tg(Thy1-SNCA)12Mjff	solute carrier family 4, sodium bicarbonate cotransporter, member 7	protein-coding	-0.493704461970091	-0.856012208689772	-0.861665239843445	-0.863959728756569	-0.867195858719446	-0.356270977638719	-0.861008654254567	-0.863559148558191	0.555099020488173	0.856610390725557	1
Merged-chr7-99474872-2	chr7	99474772	99474972	+	593.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_028145)	TTS (NM_028145)	4835.0	NR_002173	449631.0	Mm.236868	NR_002173	ENSMUSG00000064966	Snord15b	Gm5775|Rnu15-b|Rnu15b|U15B	small nucleolar RNA, C/D box 14B	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5649679-4	chr19	5649639	5649839	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12249.0	NM_009045	19697.0	Mm.249966	NM_009045	ENSMUSG00000024927	Rela	p65	v-rel reticuloendotheliosis viral oncogene homolog A (avian)	protein-coding	4.25363642361727	4.64202072727604	4.59818371622397	4.90112182587587	5.5583822263612	5.17557822002712	5.06133314654516	4.92358476365042	0.713067947770371	0.0347181189606311	0.263401654824763
Merged-chr12-51680593-2	chr12	51680493	51680693	+	761.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001172098, intron 1 of 15)	B1F1|SINE|Alu	-10373.0	NM_001329699	11782.0	Mm.386749	NM_021710	ENSMUSG00000020955	Ap4s1	AI314282	adaptor-related protein complex AP-4, sigma 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-81669392-6	chr17	81669247	81669447	+	986.138916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 1 of 8)	intron (NR_104580, intron 1 of 8)	69040.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-103025758-2	chr11	103025658	103025858	+	565.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-2785.0	NM_008707	18107.0	Mm.10265	NM_008707	ENSMUSG00000020936	Nmt1	AW536594	N-myristoyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-117481193-1	chr5	117481093	117481293	+	606.0	f1_balb.idr	intron (NM_001312914, intron 1 of 19)	ID_B1|SINE|B4	67191.0	NM_001312914	333050.0	Mm.437947	NM_001034873	ENSMUSG00000061578	Ksr2	-	kinase suppressor of ras 2	protein-coding	-1.84303373260285	-1.81303463126392	-1.82210660711932	-1.82955859819738	-1.84092785115721	-1.81106869625141	-1.8200529106377	-1.54273750312762	1.50114612804783	0.670102668014672	1
Merged-chr19-24280420-4	chr19	24280286	24280486	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008044, intron 1 of 4)	CpG	200.0	NM_008044	14297.0	Mm.7319	NM_008044	ENSMUSG00000059363	Fxn	FA|FARR|Frda|X25	frataxin	protein-coding	3.03689303240302	3.32255046635301	2.86578367729051	1.89126292596866	3.91496577044185	4.25020575529251	3.72291142716888	3.02807477952982	1.45268489013072	0.0204461001880458	0.181802601326216
Merged-chr8-35424047-2	chr8	35423936	35424136	+	686.5	f0_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48295.0	NM_177741	244416.0	Mm.247126	NM_177741	ENSMUSG00000046794	Ppp1r3b	6430576E21|AW821953|GL|PTG	protein phosphatase 1, regulatory (inhibitor) subunit 3B	protein-coding	0.304134006471819	0.688855375217585	0.0285044160283941	0.0233965871812675	0.016134549482496	0.0365669629272003	0.0299600266765294	0.882084489789871	0.119774168015831	0.956216729951574	1
Merged-chr12-3861421-3	chr12	3861280	3861480	+	791.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045884, intron 3 of 3)	intron (NR_045884, intron 3 of 3)	864.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35779712-4	chr17	35779628	35779828	+	959.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045459, intron 2 of 2)	intron (NR_045459, intron 2 of 2)	7278.0	NR_045459	74601.0	Mm.410840	NR_045459	ENSMUSG00000092171	4833427F10Rik	-	RIKEN cDNA 4833427F10 gene	ncRNA	4.51579313437483	5.17253419547604	4.47011306516446	4.90309924257714	3.56699598691937	4.23650281524049	3.2857587498176	3.83300669575838	-1.33589101811198	0.00166940573949242	0.0293688124082552
Merged-chr1-132318665-4	chr1	132318567	132318767	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195025, intron 1 of 7)	intron (NM_001195025, intron 1 of 7)	2542.0	NM_028778	74137.0	Mm.100666	NM_028778	ENSMUSG00000009772	Nuak2	1200013B22Rik|Omphk2|Snark|mKIAA0537	NUAK family, SNF1-like kinase, 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-19709161-4	chr4	19709046	19709246	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001276292)	promoter-TSS (NM_001276292)	-142.0	NR_074090	107568.0	Mm.78312	NM_177327	ENSMUSG00000041058	Wwp1	8030445B08Rik|AIP5|SDRP1|Tiul1	WW domain containing E3 ubiquitin protein ligase 1	protein-coding	6.23026941979983	6.11081617577599	6.10792424753224	6.00803509474072	5.77845592397487	6.46032536747563	6.51849924760138	6.5973351712337	0.27155563123183	0.243566729169907	0.740751247850617
Merged-chr8-67813793-4	chr8	67813683	67813883	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177698, intron 8 of 14)	intron (NM_177698, intron 8 of 14)	4512.0	NM_027626	234353.0	Mm.32525	NM_027626	ENSMUSG00000030465	Psd3	4931420C21Rik|AI661273|BC003498|D430018P08|EFA6D	pleckstrin and Sec7 domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-94549676-2	chr11	94549576	94549776	+	686.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001013381)	promoter-TSS (NM_001013381)	-469.0	NM_001013381	237926.0	Mm.342275	NM_001013381	ENSMUSG00000039096	Rsad1	B430319G23|BC056485	radical S-adenosyl methionine domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-8776131-4	chr10	8776022	8776222	+	970.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 8 of 19)	intron (NM_175155, intron 8 of 19)	109948.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-48249286-2	chr17	48249186	48249386	+	899.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021407, intron 1 of 3)	intron (NM_021407, intron 1 of 3)	1557.0	NM_021407	58218.0	Mm.302438	NM_021407	ENSMUSG00000041754	Trem3	BB134760	triggering receptor expressed on myeloid cells 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-98053879-2	chr7	98053779	98053979	+	767.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001256082, exon 46 of 49)	exon (NM_001256082, exon 46 of 49)	55369.0	NM_001256082	17921.0	Mm.1403	NM_008663	ENSMUSG00000030761	Myo7a	Hdb|Myo7|USH1B|nmf371|polka|sh-1|sh1	myosin VIIA	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-36267447-4	chr8	36267334	36267534	+	719.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-17918.0	NM_001081150	244421.0	Mm.324032	NM_001081150	ENSMUSG00000039633	Lonrf1	-	LON peptidase N-terminal domain and ring finger 1	protein-coding	2.49196315047944	2.51927435289401	3.25509037826523	2.92837326086397	2.51258625811642	3.13532255530957	2.45426646975619	3.18306243169727	0.0482379606614361	0.945001450448728	0.998431161219273
Merged-chr17-31057988-9	chr17	31057875	31058075	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009593, intron 1 of 14)	CpG	281.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-5711705-3	chr2	5711621	5711821	+	727.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290374, intron 1 of 9)	B4A|SINE|B4	3041.0	NM_001290374	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-102229869-4	chr7	102229759	102229959	+	978.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_111937, intron 2 of 5)	intron (NR_111937, intron 2 of 5)	6831.0	NR_111937	233575.0	Mm.302013	NM_145583	ENSMUSG00000030990	Pgap2	1810006G21Rik|C76649|Frag1	post-GPI attachment to proteins 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-8469213-2	chr16	8469113	8469313	+	604.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1600.0	NM_146247	239706.0	Mm.214953	NM_146247	ENSMUSG00000039345	Mettl22	-	methyltransferase like 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-79558033-4	chr14	79557931	79558131	+	968.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007920, intron 2 of 8)	intron (NM_007920, intron 2 of 8)	-29629.0	NM_026474	67955.0	Mm.18972	NM_026474	ENSMUSG00000022024	Sugt1	2410174K12Rik|SGT1	SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-53572722-3	chr5	53572610	53572810	+	597.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080928, intron 1 of 10)	L1MB7|LINE|L1	16931.0	NM_001080928	19664.0	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-62069026-4	chr18	62068922	62069122	+	967.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	110959.0	NM_007420	11555.0	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45597945-2	chr7	45597845	45598045	+	550.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	17545.0	NM_020013	56636.0	Mm.143736	NM_020013	ENSMUSG00000030827	Fgf21	-	fibroblast growth factor 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-133623443-8	chr3	133623307	133623507	+	991.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-79017.0	NM_001346736	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-128375032-2	chr6	128374932	128375132	+	624.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027697)	promoter-TSS (NM_027697)	-478.0	NM_027697	71149.0	Mm.483176	NM_027697	ENSMUSG00000079304	Tex52	4933413G19Rik	testis expressed 52	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167066878-2	chr2	167066778	167066978	+	791.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	1585.0	NR_028540	100217443.0		NR_028540		Snord12	MBII-99	small nucleolar RNA, C/D box 12	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-79749359-2	chr12	79749259	79749459	+	678.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 8 of 10)	intron (NM_009014, intron 8 of 10)	175374.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-85004342-2	chr11	85004242	85004442	+	596.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001029934, intron 29 of 33)	ID_B1|SINE|B4	46588.0	NM_007607	12351.0	Mm.1641	NM_007607	ENSMUSG00000000805	Car4	AW456718|Ca4	carbonic anhydrase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-108348670-2	chr2	108348570	108348770	+	604.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	929620.0	NM_029790	76894.0	Mm.330451	NM_029790	ENSMUSG00000057234	Mettl15	0610027B03Rik|AI303697|AW049952|Mett5d1	methyltransferase like 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-5058047-1	chr7	5057947	5058147	+	627.0	f0_c57.idr	exon (NM_001290432, exon 4 of 6)	exon (NM_001290432, exon 4 of 6)	1321.0	NM_146178	232821.0	Mm.482157	NM_146178	ENSMUSG00000035228	Ccdc106	BC018462	coiled-coil domain containing 106	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-87469527-2	chr6	87469427	87469627	+	702.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037727, intron 6 of 10)	MTEb|LTR|ERVL-MaLR	26800.0	NR_104483	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-43347911-2	chr7	43347811	43348011	+	727.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10B|LTR|ERVL	-3430.0	NM_001271019	233186.0	Mm.290569	NM_145581	ENSMUSG00000039013	Siglecf	Siglec5|mSiglec-F	sialic acid binding Ig-like lectin F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-94431651-2	chr9	94431551	94431751	+	717.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	106430.0	NM_001033145	68861.0	Mm.258746	NM_001033145	ENSMUSG00000045414	1190002N15Rik	GoPro49|HASF	RIKEN cDNA 1190002N15 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141435296-4	chr7	141435199	141435399	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177576)	promoter-TSS (NM_001177576)	76.0	NM_001360723	68267.0	Mm.33729	NM_026646	ENSMUSG00000019082	Slc25a22	1300006L01Rik|AI060884|Gc1	solute carrier family 25 (mitochondrial carrier, glutamate), member 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-149436585-4	chr3	149436488	149436688	+	940.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	161851.0	NR_040591	381482.0	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-90269443-2	chr3	90269343	90269543	+	670.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_105979)	promoter-TSS (NR_105979)	-706.0	NR_105979	102465612.0		NR_105979	ENSMUSG00000099199	Mir7012	Gm27370|mmu-mir-7012	microRNA 7012	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-103358067-3	chr15	103357965	103358165	+	925.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001314041, intron 3 of 30)	intron (NM_001314041, intron 3 of 30)	-7540.0	NR_105928	102466775.0		NR_105928	ENSMUSG00000098419	Mir6963	Gm27724|mmu-mir-6963	microRNA 6963	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-148764265-1	chr2	148764165	148764365	+	552.0	f0_balb.idr	Intergenic	Intergenic	7232.0	NM_030059	78240.0	Mm.99424	NM_030059	ENSMUSG00000036958	Cst11	9230101F08Rik|BB067629|CRES2|mCSTE1	cystatin 11	protein-coding	0.958656598585578	0.544568238131613	0.744194183504823	0.523588725652903	1.64346576735787	0.779311710952255	1.42927099497727	0.52520822142416	2.22834846938864	0.167422325632341	0.633485087165721
Merged-chr12-100440282-3	chr12	100440171	100440371	+	952.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033213, intron 5 of 19)	intron (NM_001033213, intron 5 of 19)	80551.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167271314-4	chr2	167271224	167271424	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30787.0	NM_008968	19223.0	Mm.2339	NM_008968	ENSMUSG00000017969	Ptgis	Cyp8|Cyp8a1|Pgis	prostaglandin I2 (prostacyclin) synthase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-117712863-2	chr9	117712763	117712963	+	575.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TTCC)n|Simple_repeat|Simple_repeat	-82950.0	NM_001172121	207181.0	Mm.326411	NM_178660	ENSMUSG00000039607	Rbms3	6720477E09Rik|8430436O14Rik	RNA binding motif, single stranded interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-8674583-4	chr12	8674527	8674727	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030723)	promoter-TSS (NM_030723)	-54.0	NM_030723	80913.0	Mm.341243	NM_030723	ENSMUSG00000020594	Pum2	5730503J23Rik|Pumm2	pumilio RNA-binding family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-120009947-2	chr4	120009847	120010047	+	638.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010657, intron 2 of 8)	intron (NM_010657, intron 2 of 8)	-151259.0	NM_007902	13615.0	Mm.284855	NM_007902	ENSMUSG00000028635	Edn2	ET-2|PPET2|VIC	endothelin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-89212419-3	chr4	89212323	89212523	+	846.194458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	69769.0	NM_001040654	12578.0	Mm.4733	NM_009877	ENSMUSG00000044303	Cdkn2a	ARF-INK4a|Arf|INK4a-ARF|Ink4a/Arf|MTS1|Pctr1|p16|p16(INK4a)|p16INK4a|p19<ARF>|p19ARF	cyclin dependent kinase inhibitor 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-114889856-2	chr7	114889756	114889956	+	556.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-58794.0	NR_040317	101786.0	Mm.395157	NR_040317	ENSMUSG00000108379	A730082K24Rik	AU044236	RIKEN cDNA A730082K24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-111797208-4	chr13	111797098	111797298	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011945, intron 1 of 19)	intron (NM_011945, intron 1 of 19)	11795.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	2.98133466243157	2.25387776753134	3.47114802682591	2.84941074356012	3.08741039288522	3.53614985771298	3.75648519953031	2.74782004199461	0.62441367716084	0.336380332941522	0.836627536200742
Merged-chr7-106236873-4	chr7	106236794	106236994	+	963.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21554.0	NM_029000	74558.0	Mm.458429	NM_029000	ENSMUSG00000045868	Gvin1	9130002C22Rik|9830104F22Rik|Iigs1|VLIG|VLIG-1	GTPase, very large interferon inducible 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115171457-2	chr11	115171357	115171557	+	610.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_012030, intron 1 of 5)	intron (NM_012030, intron 1 of 5)	8116.0	NM_012030	26941.0	Mm.27842	NM_012030	ENSMUSG00000020733	Slc9a3r1	EBP-50|NHE-RF|NHERF-1|NHERF1	solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 1	protein-coding	-0.700064241511417	-0.186671140929496	-0.692852367725508	-0.695563882069579	-0.699394869705802	-0.177296101845517	-0.692077155152847	-0.695090216270211	0.0394491945098347	0.989215944639676	1
Merged-chr1-171233538-4	chr1	171233437	171233637	+	986.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010185, intron 1 of 4)	intron (NM_010185, intron 1 of 4)	812.0	NM_010185	14127.0	Mm.22673	NM_010185	ENSMUSG00000058715	Fcer1g	AI573376|CD23|FcR-gamma|FcR[g]|FcRgamma|Fce1g|FcepsilonRI|Ly-50	Fc receptor, IgE, high affinity I, gamma polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-98895185-2	chr10	98895085	98895285	+	656.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1H1|LTR|ERVL-MaLR	-19457.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-11132994-2	chr16	11132894	11133094	+	652.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_029582, intron 1 of 11)	intron (NM_029582, intron 1 of 11)	1538.0	NM_029582	106200.0	Mm.291015	NM_029582	ENSMUSG00000022498	Txndc11	2810408E11Rik|AI427833|EFP1|Txdc11	thioredoxin domain containing 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-140395338-4	chr2	140395226	140395426	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001013802)	promoter-TSS (NM_001013802)	-104.0	NM_001013802	72899.0	Mm.229466	NM_028387	ENSMUSG00000068205	Macrod2	1110033L15Rik|2610107G07Rik|2900006F19Rik	MACRO domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-84219426-4	chr12	84219323	84219523	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163501)	promoter-TSS (NM_001163501)	-542.0	NM_001163501	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126695863-4	chr7	126695766	126695966	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029420)	promoter-TSS (NM_029420)	-83.0	NR_033446	75764.0	Mm.280573	NM_029420	ENSMUSG00000059772	Slx1b	1110030E23Rik|2410170E21Rik|4833422P03Rik|AI853643|Giyd1|Giyd2	SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-85990161-2	chr1	85990061	85990261	+	773.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	AT_rich|Low_complexity|Low_complexity	-29106.0	NM_001033290	227326.0	Mm.244158	NM_001033290	ENSMUSG00000049608	Gpr55	CTFL|Gm218|Lpir1	G protein-coupled receptor 55	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-88866408-2	chr15	88866308	88866508	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_145478)	TTS (NM_145478)	4214.0	NM_145478	223775.0	Mm.400129	NM_145478	ENSMUSG00000035828	Pim3	BC026639|Kid1	proviral integration site 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-78672769-2	chr14	78672669	78672869	+	851.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081336, intron 2 of 29)	intron (NM_001081336, intron 2 of 29)	-28318.0	NR_104044	380921.0	Mm.89591	NM_001081336	ENSMUSG00000034731	Dgkh	5930402B05Rik|D130015C16|DGK	diacylglycerol kinase, eta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-60747769-2	chr2	60747669	60747869	+	693.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25166.0	NM_001159564	16420.0	Mm.98193	NM_021359	ENSMUSG00000026971	Itgb6	2210409C20Rik|4831415H04Rik	integrin beta 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-57546911-1	chr12	57546811	57547011	+	729.25	f0_balb.idr	promoter-TSS (NM_008259)	promoter-TSS (NM_008259)	-800.0	NM_008259	15375.0	Mm.4578	NM_008259	ENSMUSG00000035451	Foxa1	Hnf-3a|Hnf3a|Tcf-3a|Tcf3a	forkhead box A1	protein-coding	1.30850242825314	2.25316316949775	1.15480438213369	2.54125289944748	1.31769062904222	2.01160127032067	2.29658279929684	2.11917644016953	0.0527081413569957	0.96127052452089	0.998431161219273
Merged-chr1-177191808-4	chr1	177191695	177191895	+	800.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011785, intron 1 of 12)	intron (NM_011785, intron 1 of 12)	56972.0	NM_011785	23797.0	Mm.235194	NM_011785	ENSMUSG00000019699	Akt3	AI851531|D930002M15Rik|Nmf350	thymoma viral proto-oncogene 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117216716-2	chr8	117216616	117216816	+	683.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-40303.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-119936792-3	chr9	119936745	119936945	+	913.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028735)	promoter-TSS (NM_028735)	713.0	NM_028976	74498.0	Mm.104789	NM_028976	ENSMUSG00000032513	Gorasp1	5430411C10Rik|GOLPH5|GRASP65|P65	golgi reassembly stacking protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-5475894-2	chr2	5475794	5475994	+	697.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290375, intron 2 of 10)	intron (NM_001290375, intron 2 of 10)	96504.0	NR_030601	100124465.0		NR_030601	ENSMUSG00000078031	Mir466d	Mirn466d	microRNA 466d	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-25022286-4	chr2	25022193	25022393	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146251, intron 20 of 34)	intron (NM_146251, intron 20 of 34)	-32086.0	NM_001177654	56876.0	Mm.42956	NM_020276	ENSMUSG00000006476	Nsmf	Jacob|Nelf	NMDA receptor synaptonuclear signaling and neuronal migration factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-69356712-3	chr12	69356607	69356807	+	818.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025441, intron 1 of 32)	MIRb|SINE|MIR	469.0	NM_025441	66244.0	Mm.46705	NM_025441	ENSMUSG00000020982	Nemf	1500011I12Rik|4933405E14Rik|Sdccag1	nuclear export mediator factor	protein-coding	1.03557737249218	1.29994236793899	1.1170784481885	0.76371630324328	1.16090352344441	0.992335465697197	1.26307848755181	1.52975708742052	0.845201581180825	0.525196553145331	0.948340152465298
Merged-chr9-77912551-2	chr9	77912453	77912653	+	629.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-4812.0	NM_134255	68801.0	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-113429809-2	chr13	113429709	113429909	+	835.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	73035.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-8744557-3	chr6	8744448	8744648	+	959.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252266, intron 3 of 11)	intron (NM_001252266, intron 3 of 11)	13910.0	NM_001252266	15893.0	Mm.275683	NM_010492	ENSMUSG00000062995	Ica1	69kDa|ICA69	islet cell autoantigen 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-35235615-3	chr5	35235515	35235715	+	686.266663	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42951.0	NM_007418	11553.0	Mm.57205	NM_007418	ENSMUSG00000045318	Adra2c	Adra-2c|[a]2C|alpha2-C4|alpha2C	adrenergic receptor, alpha 2c	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45699732-2	chr7	45699631	45699831	+	773.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009800)	promoter-TSS (NM_009800)	-236.0	NM_009800	12348.0	Mm.27736	NM_009800	ENSMUSG00000003273	Car11	Ca11	carbonic anhydrase 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-105275419-2	chr14	105275319	105275519	+	650.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029561, intron 1 of 7)	intron (NM_029561, intron 1 of 7)	16746.0	NM_001190989	76273.0	Mm.290669	NM_029561	ENSMUSG00000053253	Ndfip2	0710001O20Rik|2810436B12Rik|9130207N19Rik|N4wbp5a|mKIAA1165	Nedd4 family interacting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-36213834-2	chr2	36213734	36213934	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16592.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5920339-2	chr17	5920239	5920439	+	839.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025664, intron 11 of 17)	intron (NM_025664, intron 11 of 17)	-20941.0	NM_001113353	20975.0	Mm.236068	NM_011523	ENSMUSG00000023805	Synj2	AI481647|SJ2|mKIAA0348	synaptojanin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-90282355-2	chr16	90282251	90282451	+	641.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346799, intron 1 of 19)	intron (NM_001346799, intron 1 of 19)	2135.0	NM_001346799	224432.0	Mm.439811	NM_178923	ENSMUSG00000022983	Scaf4	AA517739|Sfrs15|Sra4|Srsf15	SR-related CTD-associated factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-121366747-3	chr6	121366648	121366848	+	811.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_133661)	TTS (NM_133661)	20051.0	NM_133661	14411.0	Mm.274506	NM_133661	ENSMUSG00000030109	Slc6a12	BGT1|GAT-2|GAT2|Gabt2	solute carrier family 6 (neurotransmitter transporter, betaine/GABA), member 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46138358-4	chr8	46138173	46138373	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14127.0	NM_207213	102141.0	Mm.267258	NM_207213	ENSMUSG00000038291	Snx25	AI661919|Gm1699|Gm173|Sbbi31	sorting nexin 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127393744-4	chr7	127393659	127393859	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198011)	promoter-TSS (NM_198011)	-138.0	NM_198011	101604.0	Mm.334241	NM_198011	ENSMUSG00000078580	E430018J23Rik	AI480612	RIKEN cDNA E430018J23 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-172081984-2	chr1	172081884	172082084	+	830.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009938)	promoter-TSS (NM_009938)	-545.0	NM_009938	12847.0	Mm.30041	NM_009938	ENSMUSG00000026553	Copa	AU040324|xenin	coatomer protein complex subunit alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64291076-3	chr5	64290981	64291181	+	862.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 11 of 18)	L1MB8|LINE|L1	60724.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166569362-2	chr2	166569262	166569462	+	968.666626	f1_balb.idr|f1_c57bl6.idr	exon (NM_177782, exon 38 of 40)	exon (NM_177782, exon 38 of 40)	4840.0	NR_152154	433503.0	Mm.491336	NR_152154		Gm29679	-	predicted gene, 29679	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-167331326-4	chr1	167331232	167331432	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001039483, exon 7 of 7)	3' UTR (NM_001039483, exon 7 of 7)	-18659.0	NM_019993	56752.0	Mm.292539	NM_019993	ENSMUSG00000026687	Aldh9a1	AA139417|Abaldh|ESTM40|TMABA-DH|Tmabadh	aldehyde dehydrogenase 9, subfamily A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-127832331-4	chr2	127832240	127832440	+	975.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113179)	promoter-TSS (NM_001113179)	-481.0	NM_009772	12235.0	Mm.2185	NM_009772	ENSMUSG00000027379	Bub1	AL022991|Bub1a|C80208|D2Xrf87	BUB1, mitotic checkpoint serine/threonine kinase	protein-coding	1.47399481417284	1.77750909709223	1.5888085529952	1.7786332405802	1.03042379617089	1.65374698810754	1.60066960659622	1.78793984170092	-0.368697729559177	0.744254809717469	0.998431161219273
Merged-chr12-62473678-2	chr12	62473578	62473778	+	617.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3A|LINE|L1	-214109.0	NR_131949	73309.0	Mm.276558	NR_131949		Spanxn4	1700047L15Rik	SPANX family, member N4	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127737183-4	chr10	127737078	127737278	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2360.0	NM_198035	320080.0	Mm.27258	NM_198035	ENSMUSG00000044617	Zbtb39	7030401O21Rik|mKIAA0352	zinc finger and BTB domain containing 39	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-170159071-6	chr2	170158883	170159083	+	937.7222289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MamGypLTR2b|LTR|Gypsy	-16308.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-45682776-2	chr17	45682676	45682876	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198167, intron 1 of 23)	intron (NM_198167, intron 1 of 23)	3442.0	NM_198167	224807.0	Mm.157904	NM_198167	ENSMUSG00000036026	Tmem63b	BC026370	transmembrane protein 63b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-30062131-2	chr16	30062031	30062231	+	569.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR28B|LTR|ERV1	-3226.0	NM_008235	15205.0	Mm.390859	NM_008235	ENSMUSG00000022528	Hes1	Hry|bHLHb39	hes family bHLH transcription factor 1	protein-coding	-1.84374347077615	-1.81334054547557	-1.82253464103011	-1.68542184837489	-1.84160924163507	-1.66668305012466	-1.8204532993254	-1.82873508608945	0.0376840119903869	0.991491645451152	1
Merged-chr4-101692996-4	chr4	101692905	101693105	+	995.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24402.0	NM_001122899	16847.0	Mm.259282	NM_010704	ENSMUSG00000057722	Lepr	LEPROT|Leprb|Modb1|OB-RGRP|Obr|db|diabetes|obese-like|obl	leptin receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167736432-2	chr2	167736332	167736532	+	616.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45255.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-6654311-2	chr17	6654211	6654411	+	872.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166630, intron 1 of 4).2	intron (NM_001166630, intron 1 of 4).2	1520.0	NM_001166630	100040563.0	Mm.457381	NM_001166630	ENSMUSG00000000579	Dynlt1c	100040603|Dynlt1d	dynein light chain Tctex-type 1C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-118096993-2	chr10	118096893	118097093	+	570.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A1|LTR|ERVL-MaLR	-44794.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-144220784-2	chr2	144220684	144220884	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31494.0	NR_136884	433481.0	Mm.330630	NR_136884	ENSMUSG00000074758	Gm5535	EG433481	predicted gene 5535	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-57546567-4	chr16	57546469	57546669	+	972.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 4 of 4)	intron (NM_001040397, intron 4 of 4)	-2673.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-127372935-2	chr1	127372835	127373035	+	580.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145128, intron 6 of 17)	B4A|SINE|B4	167949.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-84623040-1	chr1	84622940	84623140	+	542.0	f1_balb.idr	intron (NM_152915, intron 1 of 12)	intron (NM_152915, intron 1 of 12)	-72799.0	NR_039588	100628595.0		NR_039588	ENSMUSG00000093254	Mir5126	mir-5126|mmu-mir-5126|mu-mir-5126	microRNA 5126	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-33243498-4	chr14	33243394	33243594	+	906.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153800, intron 2 of 10)	intron (NM_153800, intron 2 of 10)	26671.0	NM_153800	239027.0	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101170569-2	chr15	101170469	101170669	+	649.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3503.0	NM_007395	11479.0	Mm.308467	NM_007395	ENSMUSG00000000532	Acvr1b	6820432J04|ALK-4|ActR-IB|ActRIB|Acvrlk4|Alk4|SKR2	activin A receptor, type 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-32363701-4	chr4	32363567	32363767	+	963.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53768.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-95141592-3	chr4	95141524	95141724	+	857.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-89402.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-69299847-4	chr18	69299747	69299947	+	858.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44645.0	NM_013685	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	-1.5061220274826	-1.47360709383584	-1.48343987814663	-1.49151681994238	-1.50383953926072	-1.47147628845725	-1.0170701920923	-1.49007105122263	2.15652851593596	0.535359572134045	1
Merged-chr10-18423708-4	chr10	18423622	18423822	+	942.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173390, intron 1 of 6)	intron (NM_173390, intron 1 of 6)	16047.0	NM_173390	215819.0	Mm.297971	NM_173390	ENSMUSG00000039835	Nhsl1	5730409E15Rik|A630035H13Rik|A730096F01|BC013565|D10Bwg0940e|mKIAA1357	NHS-like 1	protein-coding	2.25835290892137	2.45365494753887	1.16530869270859	2.06507714964229	2.18465663508009	1.49230776979961	3.07545919541772	1.14322228012705	0.321110866688879	0.769351428218268	0.998431161219273
Merged-chr9-118619997-2	chr9	118619897	118620097	+	931.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 1 of 27)	B4A|SINE|B4	13288.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-83974169-1	chr8	83974069	83974269	+	811.0	f1_c57bl6.idr	intron (NM_008854, intron 1 of 9)	intron (NM_008854, intron 1 of 9)	1191.0	NM_008854	18747.0	Mm.19111	NM_008854	ENSMUSG00000005469	Prkaca	PKCD|Pkaca	protein kinase, cAMP dependent, catalytic, alpha	protein-coding	0.0470358742288601	0.0658472848974683	0.0597053864740976	0.0549531228797416	0.444985775494692	0.0672291309721051	0.762040616742691	0.711911054070183	4.13446996098394	0.0511924516010513	1
Merged-chr9-118150158-4	chr9	118150058	118150258	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026442)	promoter-TSS (NM_026442)	38.0	NM_026442	67899.0	Mm.9953	NM_026442	ENSMUSG00000039163	Cmc1	2010110K16Rik|2010312P05Rik|AI596001	COX assembly mitochondrial protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-28209989-2	chr5	28209889	28210089	+	793.5	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001310511, exon 1 of 3)	5' UTR (NM_001310511, exon 1 of 3)	179.0	NM_001310511	269637.0	Mm.68286	NM_175651	ENSMUSG00000044681	Cnpy1	1500012D20Rik|9630008K15Rik|AI853839	canopy FGF signaling regulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43431879-4	chr4	43431746	43431946	+	919.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2712.0	NM_001162381	329831.0	Mm.454466	NM_177377	ENSMUSG00000042788	Fam166b	4833436C18Rik	family with sequence similarity 166, member B	protein-coding	2.80380083879928	2.60106857224716	1.54161067288127	2.4417207056763	2.97588081970919	3.07333038146601	3.14226271796429	2.88223283311069	1.13207118399442	0.130415834392526	0.56544727863238
Merged-chr4-3644971-1	chr4	3644871	3645071	+	546.0	f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-11535.0	NR_040643	70143.0	Mm.417835	NR_040643	ENSMUSG00000085394	2210414B05Rik	-	RIKEN cDNA 2210414B05 gene	ncRNA	1.29947896416319	1.81073801301552	0.975971597795676	0.755165525891437	1.31174754636031	1.01301595752269	0.769008449642203	1.59820286198617	-0.249408038714281	0.857942070417632	0.998431161219273
Merged-chr4-139201050-2	chr4	139200944	139201144	+	655.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	6933.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	0.303373039948987	0.623042021954236	0.33638001092293	0.324254933238613	0.855504555324661	0.355005380466394	2.07873288345666	0.929421501489116	4.173874617025	0.0149969589751059	0.145263870115706
Merged-chr13-23718075-4	chr13	23717975	23718175	+	960.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7221.0	NM_010424	15216.0	Mm.2681	NM_010424	ENSMUSG00000006611	Hfe	MR2	hemochromatosis	protein-coding	2.60318553146078	2.24710116546168	1.33260036803057	2.90040280199193	2.35951294054017	3.253634663202	1.83662182457075	1.77936881264154	0.130563667365846	0.889449261194882	0.998431161219273
Merged-chr4-148604965-1	chr4	148604865	148605065	+	642.0	f0_balb.idr	TTS (NM_010767)	TTS (NM_010767)	2421.0	NM_001003893	17175.0	Mm.378962	NM_010767	ENSMUSG00000028979	Masp2	MASP-2|MAp19	mannan-binding lectin serine peptidase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-45088781-2	chr2	45088681	45088881	+	595.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355291, intron 2 of 9)	intron (NM_001355291, intron 2 of 9)	21496.0	NM_001289521	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140333787-2	chr5	140333687	140333887	+	715.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356584, intron 2 of 4)	B3|SINE|B2	1831.0	NM_001356584	17766.0	Mm.118846	NM_008637	ENSMUSG00000036639	Nudt1	Mth1	nudix (nucleoside diphosphate linked moiety X)-type motif 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-83417665-4	chr4	83417558	83417758	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_152448)	promoter-TSS (NR_152448)	-66.0	NR_152449	77634.0	Mm.271985	NM_029949	ENSMUSG00000028483	Snapc3	1810020H02Rik|4930558A07Rik|5031401C21Rik|AI414457|E030018J20Rik	small nuclear RNA activating complex, polypeptide 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-63855504-4	chr7	63855420	63855620	+	778.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61337.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-43445133-2	chr7	43445033	43445233	+	870.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_075104, intron 1 of 5)	intron (NR_075104, intron 1 of 5)	1061.0	NR_075104	110826.0	Mm.30200	NM_026695	ENSMUSG00000004610	Etfb	0610009I16Rik|2810441H06Rik	electron transferring flavoprotein, beta polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-142578687-2	chr3	142578587	142578787	+	599.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16160.0	NM_010259	14468.0	Mm.457978	NM_010259	ENSMUSG00000040264	Gbp2b	Gbp-1|Gbp1|Mag-1|Mpa-1|Mpa1	guanylate binding protein 2b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-14144544-1	chr10	14144444	14144644	+	1000.0	f1_balb.idr	intron (NM_001358782, intron 9 of 9)	intron (NM_001358782, intron 9 of 9)	178165.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	-0.752703249331578	-1.19327662759868	-1.20367200772054	-1.21221108246634	-1.07350664517746	-1.1910239053609	-1.2013187215212	-1.21068259216948	-1.39419391438984	0.678133685438574	1
Merged-chr13-48871410-4	chr13	48871483	48871683	+	762.525024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011078)	promoter-TSS (NM_011078)	-698.0	NM_011078	18676.0	Mm.486213	NM_011078	ENSMUSG00000038025	Phf2	GRC5	PHD finger protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-122206332-4	chr7	122206239	122206439	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13157.0	NM_027363	70261.0	Mm.96997	NM_027363	ENSMUSG00000030865	Chp2	2010110P09Rik|Cbhp2	calcineurin-like EF hand protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-115119761-2	chr3	115119661	115119861	+	709.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_153458, intron 4 of 5)	Lx3A|LINE|L1	38796.0	NM_153157	229759.0	Mm.54183	NM_153157	ENSMUSG00000027965	Olfm3	B230206G02Rik	olfactomedin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-26932540-2	chr18	26932495	26932695	+	697.75	f0_balb.idr|f1_balb.idr	Intergenic	RLTR45|LTR|ERVK	-1178438.0	NM_001362334	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126779148-2	chr7	126779048	126779248	+	762.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025347, intron 4 of 4)	intron (NM_025347, intron 4 of 4)	2173.0	NM_025347	66090.0	Mm.27114	NM_025347	ENSMUSG00000042675	Ypel3	0610043B10Rik|1190001G19Rik|Suap	yippee like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-36970941-3	chr10	36970814	36971014	+	879.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3630.0	NM_008229	15182.0	Mm.19806	NM_008229	ENSMUSG00000019777	Hdac2	D10Wsu179e|YAF1|Yy1bp|mRPD3	histone deacetylase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-67609238-3	chr13	67609163	67609363	+	810.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163246, intron 1 of 3)	intron (NM_001163246, intron 1 of 3)	444.0	NM_001163246	100416706.0	Mm.478045	NM_001163246	ENSMUSG00000058093	Zfp729b	AA987127	zinc finger protein 729b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127615806-3	chr10	127615659	127615859	+	834.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 1 of 88)	intron (NM_008512, intron 1 of 88)	5389.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132921413-2	chr4	132921278	132921478	+	685.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_145553, intron 1 of 8)	MT2B|LTR|ERVL	1173.0	NM_145553	230789.0	Mm.11473	NM_145553	ENSMUSG00000028878	Fam76a	-	family with sequence similarity 76, member A	protein-coding	0.0821788018973367	-0.0442079977833916	-0.0493836694331695	0.571331942658913	0.0863334600166553	-0.0430411024589517	-0.0482422621091729	0.579089258744849	0.0306267038516608	0.988625781453858	1
Merged-chr3-108767054-1	chr3	108766954	108767154	+	741.5	f0_balb.idr	intron (NM_177859, intron 6 of 11)	intron (NM_177859, intron 6 of 11)	27396.0	NM_177859	329738.0	Mm.72322	NM_177859	ENSMUSG00000049565	Aknad1	4921525H12Rik	AKNA domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-41235786-1	chr8	41235686	41235886	+	540.0	f0_balb.idr	Intergenic	Lx4A|LINE|L1	-3973.0	NM_023662	18536.0	Mm.117896	NM_023662	ENSMUSG00000031592	Pcm1	2600002H09Rik|9430077F19Rik|C030044G17Rik	pericentriolar material 1	protein-coding	1.27598234400056	0.797157591714451	1.13708021821628	0.777030159679922	1.18135358545266	1.33333283876779	1.40735674483397	1.46241536446403	1.48434512236293	0.278535181693965	0.7819057346664
Merged-chr9-114753941-2	chr9	114753841	114754041	+	623.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	22738.0	NM_026036	67213.0	Mm.28858	NM_026036	ENSMUSG00000032434	Cmtm6	2810051A14Rik|AA536733|Cklfsf6	CKLF-like MARVEL transmembrane domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-74245044-4	chr1	74244885	74245085	+	714.575012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357387, intron 2 of 10)	B3A|SINE|B2	8468.0	NM_029711	76709.0	Mm.337038	NM_029711	ENSMUSG00000006304	Arpc2	2210023N03Rik|34kDa|p34-Arc	actin related protein 2/3 complex, subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-63148289-1	chr13	63148189	63148389	+	810.0	f0_balb.idr	intron (NM_001289926, intron 5 of 15)	intron (NM_001289926, intron 5 of 15)	-91740.0	NR_110520	72061.0	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-76760645-4	chr14	76760524	76760724	+	896.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153763, intron 1 of 1)	intron (NR_153763, intron 1 of 1)	493.0	NR_153763	73883.0	Mm.489041	NR_153763		4930431P22Rik	-	RIKEN cDNA 4930431P22 gene	ncRNA	4.90458298331136	5.00818705301222	5.48549508492223	4.43901090338851	4.15825491163517	3.77929615883843	4.26457720141164	3.31517207765277	-1.36272702503741	0.00101724839897582	0.0197704313567687
Merged-chr11-74995084-4	chr11	74995001	74995201	+	825.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001002764, intron 10 of 18)	intron (NM_001002764, intron 10 of 18)	69229.0	NM_001002764	103677.0	Mm.288460	NM_001002764	ENSMUSG00000038290	Smg6	AI317223|AU041178	Smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-43480411-3	chr13	43480290	43480490	+	905.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019930, intron 1 of 13)	intron (NM_019930, intron 1 of 13)	583.0	NM_019930	56705.0	Mm.148781	NM_019930	ENSMUSG00000038546	Ranbp9	IBAP-1|Ibap1|RanBPM	RAN binding protein 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-170153819-4	chr2	170153726	170153926	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11151.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	3.12668133593807	2.7805473770248	3.21834296328308	2.84842247020993	3.07828221885659	2.93231065496464	3.15339558082154	3.3748045516692	0.242114955269439	0.692220064452727	0.997361254512567
Merged-chr11-80355008-4	chr11	80354893	80355093	+	987.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_139228, exon 9 of 9)	3' UTR (NM_139228, exon 9 of 9)	23022.0	NM_027472	70591.0	Mm.86860	NM_027472	ENSMUSG00000057181	5730455P16Rik	-	RIKEN cDNA 5730455P16 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-65036397-4	chr12	65036336	65036536	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_177806, exon 1 of 14)	5' UTR (NM_177806, exon 1 of 14)	102.0	NM_177806	328110.0	Mm.283339	NM_177806	ENSMUSG00000035597	Prpf39	Srcs1	pre-mRNA processing factor 39	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-105736515-4	chr7	105736395	105736595	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025897)	promoter-TSS (NM_025897)	89.0	NM_025897	101867.0	Mm.231400	NM_025897	ENSMUSG00000030888	Rrp8	1500003O22Rik|2900001K19Rik|AW538116	ribosomal RNA processing 8, methyltransferase, homolog (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-44234655-4	chr4	44234569	44234769	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13402.0	NR_039565	100628618.0		NR_039565	ENSMUSG00000092677	Mir5106	mir-5106|mmu-mir-5106|mu-mir-5106	microRNA 5106	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-50763866-2	chr16	50763766	50763966	+	804.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-19543.0	NR_131006	78639.0	Mm.160109	NR_131005	ENSMUSG00000092276	1700116B05Rik	-	RIKEN cDNA 1700116B05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-174437879-4	chr2	174437784	174437984	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022325, intron 2 of 5)	intron (NM_022325, intron 2 of 5)	1155.0	NM_022325	64138.0	Mm.156919	NM_022325	ENSMUSG00000016256	Ctsz	AI787083|AU019819|CTSX|D2Wsu143e	cathepsin Z	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46991324-4	chr19	46991205	46991405	+	905.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164363, intron 1 of 17)	intron (NM_001164363, intron 1 of 17)	-21738.0	NM_001164365	76952.0	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-149628496-2	chr4	149628361	149628561	+	975.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_023051, intron 4 of 18)	intron (NM_023051, intron 4 of 18)	27106.0	NR_105990	102465983.0		NR_105990	ENSMUSG00000098580	Mir7023	Gm27912|mmu-mir-7023	microRNA 7023	ncRNA	-1.03893171936929	-1.01878014509757	-1.03085782218114	-1.035225960386	-1.0383803877219	-0.82612586385501	-0.432885863295756	-1.03483606749936	2.93024725923328	0.343480707088508	1
Merged-chr11-115482255-2	chr11	115482155	115482355	+	856.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177778, intron 2 of 2)	intron (NM_177778, intron 2 of 2)	6588.0	NM_001361594	276905.0	Mm.38019	NM_177778	ENSMUSG00000057219	Armc7	A630084C13|BC023126	armadillo repeat containing 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76195806-4	chr15	76195719	76195919	+	963.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_201394)	promoter-TSS (NM_201394)	-109.0	NM_201394	18810.0	Mm.234912	NM_011117	ENSMUSG00000022565	Plec	AA591047|AU042537|EBS1|PCN|PLTN|Plec1	plectin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-52499239-2	chr1	52499139	52499339	+	868.900024	f1_balb.idr|f1_c57bl6.idr	intron (NM_008667, intron 1 of 7)	intron (NM_008667, intron 1 of 7)	1209.0	NM_008667	17936.0	Mm.25903	NM_008667	ENSMUSG00000002881	Nab1	-	Ngfi-A binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-83081259-3	chr8	83081174	83081374	+	919.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177378, intron 6 of 6)	intron (NM_177378, intron 6 of 6)	-84078.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	2.3417895463159	3.16440403591522	2.9493815285598	3.31981610020769	2.93422400349631	3.62946171824931	3.77360501342109	2.87987203354294	0.622764236982206	0.327317501892843	0.829797588613255
Merged-chr17-15743535-3	chr17	15743421	15743621	+	858.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007690, intron 17 of 35)	intron (NM_007690, intron 17 of 35)	38554.0	NM_007690	12648.0	Mm.8137	NM_007690	ENSMUSG00000023852	Chd1	4930525N21Rik|AI851787|AW555109	chromodomain helicase DNA binding protein 1	protein-coding	0.351526758623168	0.376106720199021	0.36809751674114	0.925139914440967	0.353073017934774	1.14278141251167	0.721430664954009	0.932500825992734	1.64940569365228	0.37167818819552	1
Merged-chr1-148731603-1	chr1	148731503	148731703	+	574.0	f0_balb.idr	Intergenic	Intergenic	1190836.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-143503155-2	chr5	143503055	143503255	+	575.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144915, intron 14 of 14)	intron (NM_144915, intron 14 of 14)	24838.0	NM_009007	19353.0	Mm.292510	NM_009007	ENSMUSG00000001847	Rac1	AL023026|D5Ertd559e	Rac family small GTPase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-47634939-4	chr9	47634861	47635061	+	947.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	104609.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	4.16806223270344	3.97227141114627	4.02270391933736	3.38075093138727	3.38649287232894	2.60923728835935	3.32115453325349	3.11494700151371	-1.16982354251076	0.0302965186370768	0.238828929439979
Merged-chr5-67830739-2	chr5	67830639	67830839	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038999, intron 1 of 36)	AT_rich|Low_complexity|Low_complexity	16692.0	NM_009727	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-47181656-2	chr14	47181556	47181756	+	714.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008102, intron 1 of 5)	intron (NM_008102, intron 1 of 5)	7757.0	NM_008102	14528.0	Mm.10651	NM_008102	ENSMUSG00000037580	Gch1	GTP-CH|GTP-CH-I|GTPCH|Gch	GTP cyclohydrolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-33992022-4	chr17	33991956	33992156	+	961.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	8277.0	NM_001001892	14972.0	Mm.422886	NM_001001892	ENSMUSG00000061232	H2-K1	H-2K|H-2K(d)|H2-K|K-f	histocompatibility 2, K1, K region	protein-coding	5.68532522644811	5.31899458401308	5.83094300254362	5.35833862006292	4.32518135069846	4.12480857900551	4.27510922674821	3.92946745276401	-1.67264999397202	4.80700478164644e-07	3.53108836960372e-05
Merged-chr10-67703279-4	chr10	67703189	67703389	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-131330.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99498139-4	chr15	99498028	99498228	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028224, exon 12 of 12)	3' UTR (NM_028224, exon 12 of 12)	-23398.0	NM_029236	75284.0	Mm.32826	NM_029236	ENSMUSG00000037525	Bcdin3d	4930556P03Rik|AV138748	BCDIN3 domain containing	protein-coding	1.74445617409467	1.94868478148651	1.88490022857815	2.3104905045439	1.21794824373956	2.37313414802794	2.29275487377228	2.57933699459868	0.566233984037897	0.563957233446773	0.960367595640396
Merged-chr1-166254098-3	chr1	166254066	166254266	+	793.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164528)	promoter-TSS (NM_001164528)	27.0	NM_001357428	100039795.0	Mm.101743	NM_001164528	ENSMUSG00000040612	Ildr2	2810478N18Rik|3110063L10Rik|AI852300|D1Ertd471e|Dbsm1|Ll	immunoglobulin-like domain containing receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122649495-3	chr5	122649408	122649608	+	896.333374	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001284402)	promoter-TSS (NM_001284402)	-916.0	NM_001284402	18439.0	Mm.42026	NM_011027	ENSMUSG00000029468	P2rx7	AI467586|P2X(7)|P2X7R	purinergic receptor P2X, ligand-gated ion channel, 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34882110-2	chr17	34882010	34882210	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013484)	promoter-TSS (NM_013484)	-10.0	NM_013484	12263.0	Mm.283217	NM_013484	ENSMUSG00000024371	C2	-	complement component 2 (within H-2S)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-147586882-2	chr4	147586782	147586982	+	797.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33605.0	NM_001014397	433804.0	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154	zinc finger protein 985	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-73770785-4	chr16	73770677	73770877	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1G1|LTR|ERVL-MaLR	571290.0	NR_030464	751561.0		NR_030464	ENSMUSG00000104758	Mir691	Mirn691|mir-691|mmu-mir-691	microRNA 691	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-4640992-3	chr12	4640910	4641110	+	832.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001198969, exon 17 of 17)	3' UTR (NM_001198969, exon 17 of 17)	48002.0	NM_001198968	20403.0	Mm.341204	NM_011365	ENSMUSG00000020640	Itsn2	AI327390|Ese2|Sh3d1B|Sh3p18|mKIAA1256	intersectin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-75532408-2	chr1	75532308	75532508	+	805.666626	f1_balb.idr|f1_c57bl6.idr	exon (NM_027886, exon 18 of 25)	exon (NM_027886, exon 18 of 25)	10879.0	NM_027886	71728.0	Mm.312650	NM_027886	ENSMUSG00000026213	Stk11ip	1200014D22Rik|BB131189|LIP1|LKB1IP	serine/threonine kinase 11 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-138171996-4	chr5	138171899	138172099	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021392)	promoter-TSS (NM_021392)	-22.0	NM_021392	11781.0	Mm.113205	NM_021392	ENSMUSG00000019518	Ap4m1	4930443L05Rik|Ap4m4	adaptor-related protein complex AP-4, mu 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-99185987-2	chr9	99185887	99186087	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45776.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-109694883-2	chr8	109694783	109694983	+	549.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-1589.0	NM_001361562	71955.0	Mm.290036	NM_028018	ENSMUSG00000031729	Ist1	2400003C14Rik|AW536298|mKIAA0174	increased sodium tolerance 1 homolog (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-62675895-4	chr11	62675780	62675980	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27216.0	NM_175002	216829.0	Mm.295306	NM_175002	ENSMUSG00000048497	Mmgt2	AI852046	membrane magnesium transporter 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-4912432-2	chr17	4912332	4912532	+	740.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-82642.0	NM_001085355	239985.0	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-46930515-4	chr13	46930411	46930611	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010617)	promoter-TSS (NM_010617)	-793.0	NM_010617	16553.0	Mm.342703	NM_010617	ENSMUSG00000021375	Kif13a	4930505I07Rik|mKIAA4109	kinesin family member 13A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-83369785-2	chr15	83369685	83369885	+	553.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2488.0	NR_027980	69291.0	Mm.66794	NM_001033147		1700001L05Rik	-	RIKEN cDNA 1700001L05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140508861-4	chr5	140508759	140508959	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021528, intron 1 of 1)	intron (NM_021528, intron 1 of 1)	3250.0	NM_021528	59031.0	Mm.28934	NM_021528	ENSMUSG00000036599	Chst12	AI595374|C4S-2|C4ST2	carbohydrate sulfotransferase 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-19777618-4	chr14	19777519	19777719	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008695, intron 4 of 20)	intron (NM_008695, intron 4 of 20)	26362.0	NM_008695	18074.0	Mm.20348	NM_008695	ENSMUSG00000021806	Nid2	AW547149|Ly111|NID-2|entactin-2|nidogen-2	nidogen 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-110387100-4	chr5	110386985	110387185	+	994.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028596)	promoter-TSS (NM_028596)	42.0	NM_028596	381668.0	Mm.348782	NM_028596	ENSMUSG00000043323	Fbrsl1	2410025L10Rik|AI467568|Gm1049|Gm29766|mKIAA1545	fibrosin-like 1	protein-coding	4.04639712353429	1.67520601345126	3.37687165625057	2.4528356991169	3.81925848396657	4.52062425511206	2.7190763690476	3.00399255184415	0.768336752440366	0.303914493270152	0.8057674035626
Merged-chr13-63563354-6	chr13	63563259	63563459	+	913.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008957, intron 2 of 23)	CpG	2376.0	NM_008957	19206.0	Mm.228798	NM_008957	ENSMUSG00000021466	Ptch1	A230106A15Rik|Ptc|Ptc1|Ptch|mes|wig	patched 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-167246469-4	chr1	167246384	167246584	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030724, intron 1 of 6)	L1M4|LINE|L1	38643.0	NM_030724	80914.0	Mm.280895	NM_030724	ENSMUSG00000026558	Uck2	AA407809|AI481316|AU018180|AU020720|TSA903|UK|UMK|Umpk	uridine-cytidine kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-75832193-4	chr14	75832078	75832278	+	997.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	12786.0	NR_045294	100043189.0	Mm.426329	NR_045294		Gm4285	-	predicted gene 4285	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-29925747-4	chr6	29925659	29925859	+	978.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037740, intron 4 of 20)	intron (NM_001037740, intron 4 of 20)	8746.0	NM_001037740	320609.0	Mm.56097	NM_177204	ENSMUSG00000039629	Strip2	D330017J20Rik|Fam40b	striatin interacting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56820439-2	chr17	56820339	56820539	+	844.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009056, intron 1 of 16)	B1_Mus2|SINE|Alu	10569.0	NM_009056	19725.0	Mm.102	NM_009056	ENSMUSG00000024206	Rfx2	5430432H19Rik	regulatory factor X, 2 (influences HLA class II expression)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-72835273-2	chr17	72835173	72835373	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1355.0	NM_027166	383295.0	Mm.277533	NM_027166	ENSMUSG00000039770	Ypel5	2310076K21Rik|CGI-127	yippee like 5	protein-coding	-0.560860801747901	-0.220069299218521	-0.389969820968519	-0.556895456241341	-0.560273004004261	-0.213212110598446	-0.385793276203292	-0.556476269101656	0.0397823175424508	0.987399787397676	1
Merged-chr4-88464789-4	chr4	88464669	88464869	+	922.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25843.0	NM_025760	66775.0	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	2.37740918902005	3.12126038522462	2.68416745797188	1.35894532894451	1.90774556471424	2.79999396183445	2.49159271469323	2.15798567304115	-0.324816577224985	0.715683218514088	0.998431161219273
Merged-chr8-71337345-2	chr8	71337174	71337374	+	668.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001142322, intron 14 of 39)	intron (NM_001142322, intron 14 of 39)	-29574.0	NM_001145780	67023.0	Mm.41890	NM_025917	ENSMUSG00000002395	Use1	2010315L10Rik|5730403H22Rik|AV002165|D12|Ed2|Q-snare|p31	unconventional SNARE in the ER 1 homolog (S. cerevisiae)	protein-coding	-0.0752712074171622	-0.061322087918529	0.101356945989273	0.436052937539441	0.182328219879039	-0.0602857232358086	-0.0648989896238713	0.442713304251963	0.195516445307899	0.928499326378443	1
Merged-chr16-76658600-2	chr16	76658500	76658700	+	909.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	109805.0	NR_155449	102632730.0		NR_155449		Gm30726	-	predicted gene, 30726	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-142620652-4	chr3	142620541	142620741	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010260)	promoter-TSS (NM_010260)	-22.0	NM_010260	14469.0	Mm.24038	NM_010260	ENSMUSG00000028270	Gbp2	-	guanylate binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131973405-3	chr1	131973239	131973439	+	708.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145977, intron 1 of 4)	intron (NM_145977, intron 1 of 4)	2730.0	NM_145977	212980.0	Mm.200307	NM_145977	ENSMUSG00000026435	Slc45a3	2210413P12Rik|AU023994|AU043764|IPCA-6|PRST|Pcanap6	solute carrier family 45, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-87668645-1	chr4	87668545	87668745	+	613.0	f0_balb.idr	Intergenic	Intergenic	137678.0	NM_001286158	70122.0	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-36041167-3	chr12	36041063	36041263	+	616.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025359, intron 1 of 5)	intron (NM_025359, intron 1 of 5)	1315.0	NM_025359	66109.0	Mm.254663	NM_025359	ENSMUSG00000020577	Tspan13	1100001I23Rik|NET-6|Tm4sf13	tetraspanin 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122044751-1	chr5	122044651	122044851	+	705.0	f0_balb.idr	intron (NM_001312908, intron 1 of 22)	(CA)n|Simple_repeat|Simple_repeat	3074.0	NM_007804	13048.0	Mm.156172	NM_007804	ENSMUSG00000042589	Cux2	1700051K22Rik|Cutl2|Cux-2	cut-like homeobox 2	protein-coding	-0.562085764356753	0.198196079355473	-0.553720812704522	-0.556861992072746	-0.16216361848507	-0.548740094925344	-0.552823595726827	-0.556312938734869	-1.21183479020471	0.66443551550223	1
Merged-chr11-93955917-4	chr11	93955774	93955974	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001077529)	promoter-TSS (NM_001077529)	-91.0	NM_001077529	18103.0	Mm.1260	NM_008705	ENSMUSG00000020857	Nme2	NM23-H2|NM23B|nm23-M2	NME/NM23 nucleoside diphosphate kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-20677573-2	chr16	20677473	20677673	+	581.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145941, intron 6 of 32)	intron (NM_145941, intron 6 of 32)	4846.0	NM_001304432	208643.0	Mm.260256	NM_145941	ENSMUSG00000045983	Eif4g1	E030015G23Rik|eIF-4-gamma 1|eIF-4G 1|eIF-4G1|eIF4GI	eukaryotic translation initiation factor 4, gamma 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-3517480-2	chr8	3517380	3517580	+	827.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_152827, intron 2 of 31)	intron (NR_152827, intron 2 of 31)	617.0	NR_152827	50767.0	Mm.23085	NM_015801	ENSMUSG00000004565	Pnpla6	AI661849|MSws|Nte	patatin-like phospholipase domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-94986446-1	chr11	94986346	94986546	+	548.0	f0_balb.idr	Intergenic	Intergenic	-4766.0	NM_172261	217124.0	Mm.229087	NM_172261	ENSMUSG00000038976	Ppp1r9b	SPL|Spn	protein phosphatase 1, regulatory subunit 9B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-47440234-4	chr19	47440122	47440322	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008018, intron 1 of 14)	intron (NM_008018, intron 1 of 14)	24189.0	NM_001164717	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	4.19099846777129	3.34679086454671	4.55952980603648	3.53364798491361	4.03238116181571	4.04687099370783	5.09196462651448	3.71836017310472	0.440107780152349	0.382264445462125	0.873396688145393
Merged-chr7-80073493-2	chr7	80073393	80073593	+	740.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045695, intron 1 of 2)	intron (NR_045695, intron 1 of 2)	1764.0	NR_045695	100859962.0	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-85915199-4	chr5	85915074	85915274	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	150409.0	NM_001345902	12617.0	Mm.4649	NM_007683	ENSMUSG00000029253	Cenpc1	CENP-C|Cenpc	centromere protein C1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-77044392-2	chr1	77044292	77044492	+	611.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	452376.0	NR_105770	102465180.0		NR_105770	ENSMUSG00000099141	Mir6352	Gm27481|mmu-mir-6352	microRNA 6352	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-15748049-3	chr6	15747945	15748145	+	687.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175088, intron 3 of 4)	(TG)n|Simple_repeat|Simple_repeat	27384.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-37121749-3	chr13	37121666	37121866	+	877.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-71522.0	NM_001166391	74145.0	Mm.235105	NM_028784	ENSMUSG00000039109	F13a1	1200014I03Rik|AI462306|F13a	coagulation factor XIII, A1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69752508-2	chr11	69752408	69752608	+	801.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291068, intron 1 of 28)	B1_Mur2|SINE|Alu	6125.0	NM_001291068	20020.0	Mm.16533	NM_009089	ENSMUSG00000005198	Polr2a	220kDa|Rpb1|Rpo2-1	polymerase (RNA) II (DNA directed) polypeptide A	protein-coding	-0.557729759220241	-0.79339650415395	-0.795986349652498	-0.647340810896395	-0.667424333117571	-0.791772185602995	-0.488655870351548	-0.797625614594313	0.196498106331162	0.941342943004874	1
Merged-chr9-35559501-4	chr9	35559400	35559600	+	850.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_023292, exon 2 of 5)	5' UTR (NM_023292, exon 2 of 5)	940.0	NM_023292	67049.0	Mm.425574	NM_023292	ENSMUSG00000032103	Pus3	2610020J05Rik|5730412F04Rik	pseudouridine synthase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-83244801-2	chr2	83244701	83244901	+	563.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-399777.0	NM_026934	69082.0	Mm.27804	NM_026934	ENSMUSG00000027091	Zc3h15	1700006A17Rik|1810012H02Rik|2610312B22Rik|FM22|Ierepo4	zinc finger CCCH-type containing 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-52089616-2	chr16	52089516	52089716	+	595.25	f0_balb.idr|f0_c57.idr	intron (NM_001033238, intron 3 of 17)	intron (NM_001033238, intron 3 of 17)	58067.0	NM_001033238	208650.0	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-156033681-4	chr4	156033634	156033834	+	935.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7412.0	NM_021985	21936.0	Mm.3180	NM_009400	ENSMUSG00000041954	Tnfrsf18	AITR|Gitr	tumor necrosis factor receptor superfamily, member 18	protein-coding	4.76746370834358	4.24710969635209	3.84440767430762	2.81812501426297	4.71717166460329	4.27671561342063	3.43697500007304	3.21760810632892	-0.0548915773920018	0.922713070870111	0.998431161219273
Merged-chr19-47267420-2	chr19	47267320	47267520	+	677.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001164717, exon 14 of 14)	exon (NM_001164717, exon 14 of 14)	6169.0	NR_105961	102466782.0		NR_105961	ENSMUSG00000098786	Mir6995	Gm27576|mmu-mir-6995	microRNA 6995	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-123229822-4	chr6	123229718	123229918	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020001)	promoter-TSS (NM_020001)	-25.0	NM_001190320	56620.0	Mm.271782	NM_020001	ENSMUSG00000023349	Clec4n	Clec6a|Clecsf10|Nkcl	C-type lectin domain family 4, member n	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-74956325-2	chr14	74956225	74956425	+	663.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8448.0	NM_001033439	380916.0	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180313077-4	chr1	180312972	180313172	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17404.0	NM_001081175	320404.0	Mm.132535	NM_001081175	ENSMUSG00000038855	Itpkb	1110033J02Rik|E130307H12Rik	inositol 1,4,5-trisphosphate 3-kinase B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-93178045-1	chr10	93177945	93178145	+	550.5	f0_balb.idr	intron (NM_146239, intron 1 of 16)	MER110A|LTR|ERV1	15260.0	NR_035452	100316689.0		NR_035452	ENSMUSG00000089214	Mir1931	mir-1931|mmu-mir-1931	microRNA 1931	ncRNA	-1.84436392554074	-1.52091821270385	-1.82290882857571	-1.83054882630441	-1.84220491470818	-1.81159244170985	-1.82080331928423	-1.82918127036376	-1.56828060379516	0.655578384384393	1
Merged-chr9-69125459-3	chr9	69125368	69125568	+	623.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013646, intron 1 of 10)	intron (NM_013646, intron 1 of 10)	-164373.0	NM_001289916	19883.0	Mm.378450	NM_013646	ENSMUSG00000032238	Rora	9530021D13Rik|Nr1f1|ROR1|ROR2|ROR3|nmf267|sg|staggerer|tmgc26	RAR-related orphan receptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-115815163-2	chr6	115815063	115815263	+	641.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110506, intron 6 of 8)	RSINE1|SINE|B4	-6420.0	NM_172086	19951.0	Mm.104368	NM_172086	ENSMUSG00000057841	Rpl32	AU020185|rpL32-3A	ribosomal protein L32	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-128203571-2	chr7	128203471	128203671	+	779.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045183)	promoter-TSS (NR_045183)	-243.0	NR_045183	70973.0	Mm.441564	NR_045183	ENSMUSG00000108354	4931431B13Rik	1700108I23Rik|AA536668	RIKEN cDNA 4931431B13 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-78958976-4	chr3	78958887	78959087	+	809.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	185900.0	NM_001310536	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-125282156-2	chr5	125282056	125282256	+	593.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_016741, intron 11 of 12)	intron (NM_016741, intron 11 of 12)	58938.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69269887-2	chr11	69269787	69269987	+	639.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32865.0	NM_008192	14919.0	Mm.291816	NM_008192	ENSMUSG00000020890	Gucy2e	GC-E|GC1|ROS-GC1	guanylate cyclase 2e	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-160212976-4	chr1	160212888	160213088	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009786)	promoter-TSS (NM_009786)	-96.0	NM_009786	12301.0	Mm.10702	NM_009786	ENSMUSG00000014226	Cacybp	SIP	calcyclin binding protein	protein-coding	8.33731923896777	8.16164862634023	8.44988430439857	8.23355026085678	7.99323317735297	7.37608734100461	8.31078910254388	7.63427501093452	-0.43774240461896	0.00917424325221846	0.102297928011261
Merged-chr8-123024951-2	chr8	123024851	123025051	+	917.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 1 of 12)	intron (NM_001081379, intron 1 of 12)	17333.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27026712-1	chr17	27026612	27026812	+	715.0	f1_c57bl6.idr	intron (NR_149749, intron 1 of 6)	intron (NR_149749, intron 1 of 6)	1915.0	NM_007523	12018.0	Mm.2443	NM_007523	ENSMUSG00000057789	Bak1	Bak|N-BAK1|N-Bak	BCL2-antagonist/killer 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-61416694-4	chr3	61416597	61416797	+	977.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52190.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-130781290-1	chr2	130781190	130781390	+	593.0	f0_balb.idr	intron (NM_029432, intron 12 of 36)	MLTR12|LTR|ERV1	22811.0	NR_024097	100043766.0	Mm.447040	NR_024097		Gm14057	-	Ppp1r14c pseudogene	pseudo	0.276720922405331	0.304715034701001	0.29566194150679	0.288600603575436	1.24413570698539	0.306740883761756	1.06041876178544	0.899460821269563	4.52708536038651	0.0178384119200059	1
Merged-chr17-34924580-6	chr17	34924475	34924675	+	991.361084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023557, intron 13 of 20)	intron (NM_023557, intron 13 of 20)	-6678.0	NM_010893	18010.0	Mm.8856	NM_010893	ENSMUSG00000007038	Neu1	AA407268|AA407316|Aglp|Apl|Bat-7|Bat7|G9|Map-2|Neu|Neu-1	neuraminidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-95841545-1	chr10	95841445	95841645	+	551.0	f0_balb.idr	Intergenic	Intergenic	-99118.0	NM_001001932	216238.0	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-7566600-2	chr9	7566500	7566700	+	592.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008611, intron 8 of 9)	intron (NM_008611, intron 8 of 9)	-4796.0	NM_001310717	234911.0	Mm.334940	NM_001030289	ENSMUSG00000070323	Mmp27	Gm180	matrix metallopeptidase 27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-98776840-4	chr10	98776763	98776963	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-137779.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-5771077-4	chr2	5770969	5771169	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56307.0	NM_177343	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	5.10666171515597	5.42226688088429	6.14847226063226	5.3442762465186	5.50764045130624	5.90430807200194	5.04629087353488	3.90662548544632	-0.339925090631636	0.380191066315171	0.871963632021681
Merged-chr7-45703283-2	chr7	45703183	45703383	+	844.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_009800, intron 6 of 8)	intron (NM_009800, intron 6 of 8)	-1964.0	NM_016974	13170.0	Mm.24222	NM_016974	ENSMUSG00000059824	Dbp	-	D site albumin promoter binding protein	protein-coding	0.930352394577631	0.831346133567574	0.463968662604956	0.62574598614095	0.44921839756923	0.839297288144791	0.649603469471119	1.19569110595	0.50681669509741	0.753906049060325	1
Merged-chr12-111157088-1	chr12	111156988	111157188	+	556.0	f1_balb.idr	Intergenic	Lx7|LINE|L1	-9282.0	NM_001286122	22031.0	Mm.27431	NM_011632	ENSMUSG00000021277	Traf3	AI528849|CAP-1|CD40bp|CRAF1|LAP1|T-BAM|amn	TNF receptor-associated factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-74946837-4	chr14	74946719	74946919	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033439, intron 1 of 19)	intron (NM_001033439, intron 1 of 19)	1058.0	NM_001252132	380916.0	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99382268-2	chr15	99382168	99382368	+	549.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10679.0	NM_026669	110213.0	Mm.16769	NM_026669	ENSMUSG00000023010	Tmbim6	5031406P05Rik|Bi1|Tegt	transmembrane BAX inhibitor motif containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-101762640-4	chr2	101762547	101762747	+	775.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355625, intron 3 of 8)	intron (NM_001355625, intron 3 of 8)	35060.0	NM_175181	72446.0	Mm.24138	NM_175181	ENSMUSG00000032841	Prr5l	2600010E01Rik|4833411O04Rik|Protor-2|Protor2	proline rich 5 like	protein-coding	0.730517590347918	0.33151718906435	0.83250079696736	1.4233250312921	0.616494279852801	0.333538617537395	0.324487925286946	0.316682829437646	-2.9904996274081	0.110426415328067	1
Merged-chr4-152120628-2	chr4	152120528	152120728	+	779.75	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001291010)	TTS (NM_001291010)	4285.0	NM_033042	85030.0	Mm.101198	NM_033042	ENSMUSG00000024793	Tnfrsf25	APO-3|DDR3|DR3|LARD|TR3|TRAMP|Tnfrsf12|WSL-1|WSL-LR|Wsl	tumor necrosis factor receptor superfamily, member 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-24501663-5	chr13	24501576	24501776	+	907.966675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-80513.0	NM_001286100	193385.0	Mm.217319	NM_029679	ENSMUSG00000036006	Ripor2	Fam65b	RHO family interacting cell polarization regulator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129960135-6	chr4	129959903	129960103	+	823.872192	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040647)	promoter-TSS (NR_040647)	-371.0	NR_040647	72225.0	Mm.102193	NR_040647		1700003M07Rik	-	RIKEN cDNA 1700003M07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-83009743-4	chr15	83009625	83009825	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028728, intron 4 of 5)	intron (NM_028728, intron 4 of 5)	13413.0	NM_028728	74039.0	Mm.32584	NM_028728	ENSMUSG00000058099	Nfam1	4921501M20Rik|Cnaip	Nfat activating molecule with ITAM motif 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-15423058-2	chr8	15422958	15423158	+	569.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	365405.0	NM_008664	17930.0	Mm.272115	NM_008664	ENSMUSG00000031461	Myom2	AW146149	myomesin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-24641574-4	chr10	24641480	24641680	+	983.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008813, exon 25 of 25)	3' UTR (NM_008813, exon 25 of 25)	46138.0	NM_010217	14219.0	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33996318-4	chr16	33996224	33996424	+	872.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177357, intron 51 of 59)	intron (NM_177357, intron 51 of 59)	-29286.0	NM_009471	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-3300930-4	chr5	3300825	3301025	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42968.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-108490691-4	chr9	108490571	108490771	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001168371)	promoter-TSS (NM_001168371)	-5.0	NM_001168372	71472.0	Mm.289706	NM_027804	ENSMUSG00000006676	Usp19	8430421I07Rik|AI047774|Zmynd9	ubiquitin specific peptidase 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128427316-2	chr2	128427205	128427405	+	937.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_028591, intron 1 of 1)	intron (NR_028591, intron 1 of 1)	2046.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30472554-2	chr7	30472457	30472657	+	639.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_019459, intron 20 of 29)	B3|SINE|B2	-6966.0	NR_004443	445267.0	Mm.398140	NR_004443	ENSMUSG00000087009	Nphs1os	Nphs1as	nephrosis 1 homolog, nephrin, opposite strand	ncRNA	3.25081275884819	2.58312571522166	2.86931027565722	2.89077665390663	3.15463997761238	2.87075558707077	2.89103459512838	2.90513995862086	0.063390311457161	0.921981361255882	0.998431161219273
Merged-chr2-142699490-4	chr2	142699384	142699584	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355123, intron 23 of 26)	intron (NM_001355123, intron 23 of 26)	201980.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-45574067-3	chr19	45573934	45574134	+	977.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172639, intron 4 of 5)	intron (NM_172639, intron 4 of 5)	13449.0	NM_172639	226162.0	Mm.21978	NM_172639	ENSMUSG00000041035	Dpcd	Ndac	deleted in primary ciliary dyskinesia	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-119476983-7	chr2	119476876	119477076	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026574, intron 1 of 35)	CpG	653.0	NM_026574	68142.0	Mm.330496	NM_026574	ENSMUSG00000034154	Ino80	2310079N15Rik|4632409L19Rik|Inoc1	INO80 complex subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-58902117-2	chr6	58902017	58902217	+	670.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361966, intron 23 of 25)	MIR|SINE|MIR	5009.0	NM_021432	58243.0	Mm.389747	NM_021432	ENSMUSG00000055430	Nap1l5	1110020M21Rik	nucleosome assembly protein 1-like 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-73762531-4	chr18	73762429	73762629	+	709.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8050.0	NM_053255	114615.0	Mm.50642	NM_053255	ENSMUSG00000036941	Elac1	2610018O07Rik|8430417G19Rik	elaC ribonuclease Z 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-33823576-2	chr17	33823476	33823676	+	919.1666869999999	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_103515)	promoter-TSS (NR_103515)	986.0	NM_016844	54127.0	Mm.352374	NM_016844	ENSMUSG00000067288	Rps28	-	ribosomal protein S28	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-17865373-4	chr17	17865275	17865475	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10187.0	NM_008215	15116.0	Mm.255701	NM_008215	ENSMUSG00000003665	Has1	HAS	hyaluronan synthase 1	protein-coding	3.99997647150879	4.22685888036761	3.68347549461167	3.5805270277461	4.20910294614774	3.65990147272452	4.00135069701361	3.67651645042354	0.0255110466122001	0.956513272882696	0.998431161219273
Merged-chr18-25550677-2	chr18	25550577	25550777	+	776.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001362322, intron 2 of 12)	intron (NM_001362322, intron 2 of 12)	129071.0	NM_001362337	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-19009566-4	chr10	19009465	19009665	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166402, intron 1 of 7)	intron (NM_001166402, intron 1 of 7)	2398.0	NM_001166402	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	6.4652193961262	5.98785373167384	6.29781237739375	5.10624859049357	6.24790756709881	6.18148487516899	6.46422446955587	6.23374280285878	0.250930430657824	0.352191001738956	0.852434760027623
Merged-chr10-79766700-2	chr10	79766600	79766800	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_027505, intron 1 of 7)	CpG	252.0	NM_144528	70294.0	Mm.466670	NM_144528	ENSMUSG00000035890	Rnf126	2610010O19Rik	ring finger protein 126	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-6304010-4	chr15	6303911	6304111	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001008702, intron 1 of 13)	intron (NM_001008702, intron 1 of 13)	4222.0	NM_001008702	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-58274104-8	chr9	58274105	58274305	+	759.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER21C|LTR|ERVL	21041.0	NM_026942	69106.0	Mm.216502	NM_026942	ENSMUSG00000032333	Stoml1	1810015E19Rik|AI847431|SLP1|STORP|UNC24|WPB72	stomatin-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-66125095-3	chr5	66125010	66125210	+	861.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127382, intron 2 of 7)	ID4|SINE|ID	25868.0	NM_001291226	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	2.38234173457819	1.23558805621034	1.20115005159441	3.11081746546157	2.40352884755733	2.26792438719454	2.31134927217934	1.43633330822637	-0.228976041485639	0.831700628665301	0.998431161219273
Merged-chr2-90743732-2	chr2	90743632	90743832	+	780.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	-1638.0	NM_018828	55935.0	Mm.489638	NM_018828	ENSMUSG00000008200	Fnbp4	FBP30|Fnbp30|mKIAA1014	formin binding protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-39249201-4	chr18	39249090	39249290	+	839.037476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361073, intron 17 of 21)	intron (NM_001361073, intron 17 of 21)	238055.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-89149677-4	chr15	89149561	89149761	+	885.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011161)	promoter-TSS (NM_011161)	-55.0	NM_011161	19094.0	Mm.91969	NM_011161	ENSMUSG00000053137	Mapk11	P38b|Prkm11|Sapk2|Sapk2b|p38-2|p38beta|p38beta2	mitogen-activated protein kinase 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-129462198-4	chr6	129462110	129462310	+	971.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_132130, exon 6 of 6)	non-coding (NR_132130, exon 6 of 6)	-10210.0	NM_175526	243653.0	Mm.131289	NM_175526	ENSMUSG00000033082	Clec1a	5930406N14Rik	C-type lectin domain family 1, member a	protein-coding	1.80496206913694	2.39176051494947	1.19907018298197	1.76229857266258	2.30830690424487	2.6000502377456	1.45293948621426	1.91310845219103	0.714521135547	0.486640157440964	0.932503166794264
Merged-chr4-63683273-4	chr4	63683177	63683377	+	921.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48856.0	NR_151544	102632940.0	Mm.399154	NR_151544	ENSMUSG00000086817	Gm11482	-	predicted gene 11482	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-24256601-2	chr6	24256501	24256701	+	627.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-88509.0	NM_019481	55961.0	Mm.19299	NM_019481	ENSMUSG00000029700	Slc13a1	AI314066|AI987826|NaSi-1|Nas1	solute carrier family 13 (sodium/sulfate symporters), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126721806-3	chr8	126721707	126721907	+	722.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-127213.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81766569-1	chr15	81766469	81766669	+	810.0	f1_c57bl6.idr	intron (NM_001081016, intron 1 of 22)	intron (NM_001081016, intron 1 of 22)	21721.0	NM_001081016	20286.0	Mm.432075	NM_001081016	ENSMUSG00000022390	Zc3h7b	Gm627|Scrg3|Zc2h7b|mKIAA1031	zinc finger CCCH type containing 7B	protein-coding	-1.02603145697146	-0.376241055504749	-1.01842778969612	-0.848745230598705	-1.02546344279348	-1.00349733815414	-1.0156498531674	-1.0218135333607	-2.92765365526337	0.340679402409988	1
Merged-chr17-71300078-4	chr17	71299971	71300171	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357337, intron 2 of 7)	intron (NM_001357337, intron 2 of 7)	10940.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-103266078-1	chr11	103265978	103266178	+	540.0	f1_c57bl6.idr	intron (NM_016896, intron 1 of 15)	intron (NM_016896, intron 1 of 15)	1323.0	NM_016896	53859.0	Mm.158981	NM_016896	ENSMUSG00000020941	Map3k14	Nik|aly	mitogen-activated protein kinase kinase kinase 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-4969871-3	chr17	4969755	4969955	+	890.9722289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25219.0	NM_001085355	239985.0	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-97444059-4	chr16	97443957	97444157	+	937.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18848.0	NM_010846	17857.0	Mm.33996	NM_010846	ENSMUSG00000000386	Mx1	AI893580|Mx|Mx-1	MX dynamin-like GTPase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-56374752-1	chr10	56374652	56374852	+	681.0	f0_balb.idr	Intergenic	Intergenic	-2548.0	NM_010288	14609.0	Mm.378921	NM_010288	ENSMUSG00000050953	Gja1	AU042049|AW546267|Cnx43|Cx43|Cx43alpha1|Gja-1|Npm1|connexin43	gap junction protein, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-57246769-4	chr16	57246664	57246864	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15298.0	NM_001358433	67581.0	Mm.257819	NM_026254	ENSMUSG00000022749	Tbc1d23	4930451A13Rik|AU015720|AU043671|AU043778|D030022P07Rik|W51689	TBC1 domain family, member 23	protein-coding	2.5791193915291	1.57979450740873	1.23560137889429	3.3639873156918	3.12023586543177	1.83926334350559	1.24521258622198	2.74408015862347	-0.0628849789962413	0.95255809471475	0.998431161219273
Merged-chr10-27366223-3	chr10	27366128	27366328	+	943.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008481, intron 5 of 63)	intron (NM_008481, intron 5 of 63)	-23638.0	NR_131034	75855.0	Mm.402080	NR_131034	ENSMUSG00000101636	4930579H20Rik	-	RIKEN cDNA 4930579H20 gene	ncRNA	3.0731822076141	2.12854566086292	2.41054855012835	2.34038636341061	3.62717170759887	2.51593136157402	3.42016505416897	2.7345349241981	1.11720912292393	0.123807505717702	0.551658122846446
Merged-chr13-66591865-2	chr13	66591765	66591965	+	611.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-150747.0	NM_001290196	76803.0	Mm.183391	NM_183119	ENSMUSG00000074832	2410141K09Rik	4930482J15Rik|Ayu21-35|Gt(pU21)35Imeg	RIKEN cDNA 2410141K09 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-100159400-2	chr5	100159300	100159500	+	669.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_182841, intron 1 of 7)	CpG	408.0	NM_182841	231503.0	Mm.99790	NM_182841	ENSMUSG00000050640	Tmem150c	-	transmembrane protein 150C	protein-coding	-0.387424802247219	0.225093859036634	-0.379366054029851	-0.0859443517545632	-0.386678495882768	-0.374533681460938	-0.378497430311819	-0.081557658621459	-1.68638265740021	0.50796622284999	1
Merged-chr4-53124853-4	chr4	53124744	53124944	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 5 of 49)	L3|LINE|CR1	35051.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-13551437-1	chr3	13551337	13551537	+	946.0	f0_balb.idr	intron (NM_001357034, intron 1 of 7)	intron (NM_001357034, intron 1 of 7)	78638.0	NM_001357036	76897.0	Mm.422625	NM_178631	ENSMUSG00000039717	Ralyl	0710005M24Rik	RALY RNA binding protein-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-62231176-1	chr18	62231076	62231276	+	585.0	f1_balb.idr	Intergenic	Intergenic	51076.0	NM_001013754	225609.0	Mm.296917	NM_001013754	ENSMUSG00000054589	Gm9949	EG225609	predicted gene 9949	protein-coding	0.413054683750357	0.464128898370075	0.447983084178478	0.435151487635434	1.09157996283754	1.8518765474853	0.451589822521457	1.7677765801665	5.04270509210463	0.00298861966053104	0.045308654768257
Merged-chr12-85500816-2	chr12	85500716	85500916	+	739.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26926.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-87322780-2	chr3	87322669	87322869	+	662.5	f0_c57.idr|f1_c57bl6.idr	Intergenic	RLTR12B|LTR|ERVK	-35112.0	NM_009690	11801.0	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	3.35453853152499	2.45594298952814	1.60157832625152	3.7472748649062	1.69349364450752	1.36773205212257	2.52019599960102	2.43488087351051	-1.79712934770706	0.0473743822322793	0.315659665692088
Merged-chr4-99119158-2	chr4	99119058	99119258	+	755.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_026082, intron 1 of 47)	intron (NM_026082, intron 1 of 47)	1757.0	NM_001290636	67299.0	Mm.260623	NM_026082	ENSMUSG00000028556	Dock7	3110056M06Rik|Gm430	dedicator of cytokinesis 7	protein-coding	0.514375460527892	0.266417421106552	0.259832432071694	0.559857661527176	0.394766861502584	0.768842089148186	0.261285718302038	0.981735215812697	1.51131026106855	0.408359332141162	1
Merged-chr8-71286488-4	chr8	71286390	71286590	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142322, intron 1 of 39)	intron (NM_001142322, intron 1 of 39)	13776.0	NM_001142323	17925.0	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	-0.209145087816258	-0.183392144104963	1.15865404841241	0.341221966429673	-0.207489922126782	-0.181551140979076	-0.1898197462315	-0.197003929949594	-4.27514183128356	0.0586069053389319	1
Merged-chr13-34667402-4	chr13	34667301	34667501	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_105041)	TTS (NR_105041)	14478.0	NR_105041	101056149.0	Mm.421309	NR_105041	ENSMUSG00000086786	Gm15908	-	predicted gene 15908	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99234642-3	chr15	99234599	99234799	+	748.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010601, intron 10 of 14)	intron (NM_010601, intron 10 of 14)	9723.0	NM_010601	16512.0	Mm.374793	NM_010601	ENSMUSG00000037579	Kcnh3	AU019351|C030044P22Rik|Elk2|Kv12.2|Melk2	potassium voltage-gated channel, subfamily H (eag-related), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34743939-2	chr17	34743839	34744039	+	773.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009780)	promoter-TSS (NM_009780)	-42.0	NM_009780	12268.0	Mm.477109	NM_009780	ENSMUSG00000073418	C4b	C4|Ss	complement component 4B (Chido blood group)	protein-coding	0.954128798895852	0.607723568399849	1.16218065973329	0.594497570426174	1.15223251522992	1.48103823917148	0.601888515294598	0.595499298311988	0.921938198132178	0.588519689740228	0.968506662056957
Merged-chr8-125858006-2	chr8	125857906	125858106	+	730.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_175561, intron 12 of 33)	intron (NM_175561, intron 12 of 33)	-39908.0	NR_155422	102632990.0	Mm.429446	NR_155422		A730098A19Rik	-	RIKEN cDNA A730098A19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85624633-2	chr12	85624533	85624733	+	754.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205053, intron 2 of 3)	ID_B1|SINE|B4	24615.0	NM_001205053	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-119828285-2	chr8	119828185	119828385	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028071, intron 2 of 3)	(A)n|Simple_repeat|Simple_repeat	12294.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-134228581-2	chr5	134228481	134228681	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010876, intron 1 of 10)	intron (NM_010876, intron 1 of 10)	1044.0	NM_001286037	17969.0	Mm.425296	NM_010876	ENSMUSG00000015950	Ncf1	NCF-47K|NOXO2|Ncf-1|p47-phox|p47<phox>|p47phox	neutrophil cytosolic factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-118896433-4	chr2	118896380	118896580	+	873.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5135.0	NM_001045523	228536.0	Mm.330487	NM_001045523	ENSMUSG00000040007	Bahd1	AL022997|AW541238|Gm117|mKIAA0945	bromo adjacent homology domain containing 1	protein-coding	1.58364635427589	2.59379593121324	2.17676775493832	1.22088137650895	2.68777598091898	2.61374321682471	1.51381157014279	2.1242802022617	0.724502007445972	0.470011100449652	0.925671894812036
Merged-chr7-127406667-7	chr7	127406515	127406715	+	982.214294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001167832, exon 1 of 3)	5' UTR (NM_001167832, exon 1 of 3)	207.0	NM_146203	233893.0	Mm.297097	NM_146203	ENSMUSG00000045757	Zfp764	8030466O12Rik	zinc finger protein 764	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-112696671-4	chr6	112696565	112696765	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021385)	promoter-TSS (NM_021385)	5.0	NM_021385	58186.0	Mm.103812	NM_021385	ENSMUSG00000030254	Rad18	2810024C04Rik|Rad18sc	RAD18 E3 ubiquitin protein ligase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-3232757-4	chr15	3232658	3232858	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38009.0	NM_001042613	20363.0	Mm.392203	NM_009155	ENSMUSG00000064373	Selenop	AU018766|D15Ucla1|Se-P|Sepp1|selp	selenoprotein P	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69902155-1	chr11	69902055	69902255	+	805.0	f0_balb.idr	exon (NM_001291119, exon 1 of 28)	exon (NM_001291119, exon 1 of 28)	339.0	NM_001013414	216860.0	Mm.268347	NM_001013414	ENSMUSG00000047284	Neurl4	-	neuralized E3 ubiquitin protein ligase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-20241514-2	chr11	20241414	20241614	+	993.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172260, intron 2 of 6)	intron (NM_172260, intron 2 of 6)	7910.0	NM_172260	216543.0	Mm.260314	NM_172260	ENSMUSG00000044066	Cep68	6030463E10Rik|AI481761|BC027174|Kiaa0582	centrosomal protein 68	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-74223822-2	chr7	74223722	74223922	+	720.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-210140.0	NM_009181	20450.0	Mm.4954	NM_009181	ENSMUSG00000025789	St8sia2	AI323367|ST8SiaII|STX|Siat8b	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-50897592-4	chr14	50897523	50897723	+	776.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4368.0	NM_001166651	546611.0	Mm.390692	NM_001166651	ENSMUSG00000090799	Klhl33	EG546611	kelch-like 33	protein-coding	1.7256691530584	2.73969223359269	1.69670671671031	2.56802460322973	2.10516007002838	1.76608192294018	2.39590671432947	1.22009520797007	-0.781386731180279	0.433392903093548	0.905745034524566
Merged-chr18-27161374-2	chr18	27161274	27161474	+	654.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3A|LINE|L1	-1398790.0	NR_045398	320624.0	Mm.50107	NR_045398		4930474G06Rik	-	RIKEN cDNA 4930474G06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106794498-2	chr11	106794398	106794598	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166685, intron 3 of 18)	PB1D9|SINE|Alu	5246.0	NM_001166685	320162.0	Mm.30524	NM_177088	ENSMUSG00000018372	Cep95	4732496G21Rik|AI118346|AI448335|Ccdc45|D330027A14Rik|F630025I20Rik	centrosomal protein 95	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-86244218-2	chr12	86244118	86244318	+	690.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001324488, exon 2 of 9)	exon (NM_001324488, exon 2 of 9)	2360.0	NM_001324488	70373.0	Mm.252967	NM_027405	ENSMUSG00000021254	Gpatch2l	1700020O03Rik|4732487G21Rik|A630090I05Rik|Kiaa1152	G patch domain containing 2 like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-78551707-2	chr11	78551607	78551807	+	870.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133706)	promoter-TSS (NM_133706)	-972.0	NM_133706	69071.0	Mm.29431	NM_133706	ENSMUSG00000037278	Tmem97	1810014L12Rik|AI115531|AL022956|D11Bhm182e	transmembrane protein 97	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-35044250-1	chr9	35044150	35044350	+	547.0	f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-72478.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	0.703077513312459	0.75421367035302	1.45011866943015	1.71661906277825	0.706399140194833	0.757829655522654	1.79562575170608	1.72756420374136	0.400847789984401	0.794884371183245	0.998431161219273
Merged-chr17-71257826-1	chr17	71257726	71257926	+	595.0	f1_balb.idr	intron (NM_001357338, intron 4 of 7)	HAL1|LINE|L1	53172.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	0.398997950428676	0.268642736735256	0.741040537277473	0.255395883582067	0.850719862660071	0.270318547159393	0.262831485776343	1.10207488415135	1.47569620644525	0.441013847723416	1
Merged-chr11-50262214-3	chr11	50262120	50262320	+	787.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175334, intron 3 of 4)	RSINE1|SINE|B4	-23688.0	NR_132733	17001.0	Mm.245151	NM_008521	ENSMUSG00000020377	Ltc4s	-	leukotriene C4 synthase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-193841763-2	chr1	193841663	193841863	+	581.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-334233.0	NR_029592	387201.0		NR_029592	ENSMUSG00000065533	Mir205	Mirn205|mir-205|mmu-mir-205	microRNA 205	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-127322454-3	chr1	127322349	127322549	+	880.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145128, intron 4 of 17)	(TG)n|Simple_repeat|Simple_repeat	117463.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140749740-4	chr5	140749639	140749839	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173405, intron 7 of 7)	intron (NM_173405, intron 7 of 7)	25612.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-80081493-7	chr2	80081358	80081558	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355141, intron 2 of 15)	MER31A|LTR|ERV1	-42556.0	NM_001355142	18573.0	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-180040520-4	chr2	180040422	180040622	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011969, intron 1 of 6)	intron (NM_011969, intron 1 of 6)	1942.0	NM_001289476	26444.0	Mm.21728	NM_011969	ENSMUSG00000027566	Psma7	C6-I	proteasome (prosome, macropain) subunit, alpha type 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97456433-4	chr6	97456327	97456527	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	2859.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	4.72214605170699	4.77303858933878	4.29611875474444	5.45362954000014	4.21759250462523	5.22222709718327	4.38979899212072	4.93484145833039	-0.166052903585376	0.672726928086607	0.99440487726309
Merged-chr4-48279688-4	chr4	48279624	48279824	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010569)	promoter-TSS (NM_010569)	-36.0	NM_010569	16348.0	Mm.317706	NM_010569	ENSMUSG00000028344	Invs	Nphp2|inv	inversin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69420364-4	chr11	69420272	69420472	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001081330)	TTS (NM_001081330)	-6697.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-6525524-2	chr11	6525424	6525624	+	780.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_045893)	TTS (NR_045893)	3236.0	NR_045893	100041286.0	Mm.459507	NR_045893	ENSMUSG00000085156	Snhg15	Gm11974	small nucleolar RNA host gene 15	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-88858970-4	chr9	88858866	88859066	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_037982)	promoter-TSS (NR_037982)	-96.0	NR_037983	319673.0	Mm.149040	NR_037982	ENSMUSG00000097177	9330159M07Rik	1700096K11Rik|mU50hg-a	RIKEN cDNA 9330159M07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-80083429-4	chr17	80083335	80083535	+	936.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21167.0	NM_144802	72692.0	Mm.64579	NM_144802	ENSMUSG00000024095	Hnrnpll	2510028H02Rik|2810036L13Rik|AI256697|AI852082|Hnrpll	heterogeneous nuclear ribonucleoprotein L-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-58114006-2	chr13	58113906	58114106	+	752.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001362415)	promoter-TSS (NM_001362415)	-359.0	NM_001362415	100503085.0	Mm.379256	NM_001195075	ENSMUSG00000014164	Klhl3	7530408C15Rik|AI430941|EG627648	kelch-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-180044373-2	chr2	180044273	180044473	+	872.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178750, intron 1 of 10)	intron (NM_178750, intron 1 of 10)	1890.0	NM_178750	269397.0	Mm.63068	NM_178750	ENSMUSG00000039086	Ss18l1	A230053O16Rik|CREST	SS18, nBAF chromatin remodeling complex subunit like 1	protein-coding	1.21814359492955	1.89201845446797	1.71529392901932	1.54977300840939	0.888589130541776	1.67277551699173	1.47819565519565	0.909557245845234	-1.17378944609058	0.356280788998063	0.85378439273359
Merged-chr11-115051366-4	chr11	115051255	115051455	+	890.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_172050)	TTS (NM_172050)	-3060.0	NM_199201	382551.0	Mm.424732	NM_199201	ENSMUSG00000069607	Cd300ld3	AY457049|Cd300lh|Clm3|Lmir7|clm-3	CD300 molecule like family member D3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139282414-4	chr5	139282309	139282509	+	992.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172723, intron 4 of 10)	intron (NM_172723, intron 4 of 10)	28912.0	NM_001163316	67604.0	Mm.270137	NM_026269	ENSMUSG00000025858	Get4	1110007L15Rik|AW412535|Cee	golgi to ER traffic protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69395007-2	chr11	69394907	69395107	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030083)	promoter-TSS (NM_030083)	339.0	NM_001045525	327951.0	Mm.415669	NM_001045525	ENSMUSG00000044795	Cyb5d1	Gm740	cytochrome b5 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-156418415-2	chr1	156418315	156418515	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346967, intron 3 of 25)	intron (NM_001346967, intron 3 of 25)	2500.0	NM_001346967	77352.0	Mm.428709	NM_001033180	ENSMUSG00000026601	Axdnd1	9430070O13Rik|Gm979	axonemal dynein light chain domain containing 1	protein-coding	2.73971231888975	2.54501934449024	2.17845153514086	2.71166144170136	2.90306396797796	2.56309489407879	2.19435619905352	2.72510278643495	0.130927536282665	0.861216963421575	0.998431161219273
Merged-chr8-25187701-4	chr8	25187645	25187845	+	796.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177089, intron 2 of 12)	intron (NM_177089, intron 2 of 12)	13797.0	NM_199323	320165.0	Mm.308452	NM_177089	ENSMUSG00000065954	Tacc1	4833447E04Rik|AA960202|B230378H13Rik	transforming, acidic coiled-coil containing protein 1	protein-coding	2.5998438055301	1.44775897490295	2.99310174807903	2.55019716577866	2.53291180593143	1.45695395286821	2.647584391356	3.25504169701467	0.225140473365133	0.80662004411614	0.998431161219273
Merged-chr5-105519277-4	chr5	105519183	105519383	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133897)	promoter-TSS (NM_133897)	-188.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-42582006-1	chr10	42581906	42582106	+	547.0	f1_c57bl6.idr	intron (NM_152229, intron 1 of 8)	intron (NM_152229, intron 1 of 8)	1582.0	NM_152229	21907.0	Mm.287100	NM_152229	ENSMUSG00000019803	Nr2e1	Mtl1|Mtll|TLL|Tlx|XTLL|fierce|frc|tailless	nuclear receptor subfamily 2, group E, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-42688289-1	chr9	42688189	42688389	+	621.0	f1_balb.idr	intron (NM_175481, intron 3 of 20)	intron (NM_175481, intron 3 of 20)	-216031.0	NM_173038	272589.0	Mm.34483	NM_173038	ENSMUSG00000037287	Tbcel	D330014K23|E130107N23Rik|Lrrc35	tubulin folding cofactor E-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-96631372-5	chr15	96631294	96631494	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166458, intron 1 of 15)	L1M2|LINE|L1	10568.0	NM_134086	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-55326759-4	chr9	55326671	55326871	+	982.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357568)	promoter-TSS (NM_001357568)	-142.0	NM_172923	244886.0	Mm.24361	NM_172923	ENSMUSG00000032313	Tmem266	9630029F15|AI118078|HVRP1	transmembrane protein 266	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-37786958-3	chr15	37786809	37787009	+	885.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359844, intron 1 of 7)	L1MB3|LINE|L1	5091.0	NM_001170866	52589.0	Mm.283370	NM_134094	ENSMUSG00000051359	Ncald	AI848120|D030020D09Rik|D15Ertd412e	neurocalcin delta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-67556298-2	chr3	67556198	67556398	+	717.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-26470.0	NM_025813	66868.0	Mm.491153	NM_025813	ENSMUSG00000027775	Mfsd1	1200003O06Rik	major facilitator superfamily domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-89293516-3	chr9	89293423	89293623	+	704.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5b|LINE|L1	82139.0	NM_001359993	107885.0	Mm.486274	NM_026829	ENSMUSG00000066442	Mthfs	1110034I12Rik|2310020H23Rik|AI119695	5, 10-methenyltetrahydrofolate synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-16912036-4	chr16	16911932	16912132	+	873.5166630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176833, intron 3 of 7)	intron (NM_176833, intron 3 of 7)	15563.0	NM_176833	68606.0	Mm.230296	NM_176833	ENSMUSG00000026181	Ppm1f	1110021B16Rik|4933427B07Rik|CaMKPase|Popx2|mKIAA0015	protein phosphatase 1F (PP2C domain containing)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-163761601-4	chr2	163761487	163761687	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11348.0	NM_001272052	11486.0	Mm.388	NM_007398	ENSMUSG00000017697	Ada	-	adenosine deaminase	protein-coding	5.46197385804996	5.30697424226162	5.82210356050637	4.62023434579902	6.67905626572119	5.71011702499868	6.60004904004534	6.76285912096048	1.25002658675321	2.30912757361032e-05	0.000913348767961868
Merged-chr2-129597278-10	chr2	129597223	129597423	+	965.8916630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355160, intron 1 of 7)	intron (NM_001355160, intron 1 of 7)	1861.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	1.61371037290234	2.10231572703904	2.46392723451124	1.84296235251796	1.77017997811863	2.3665170322749	1.90612412241518	2.31705987901951	0.176827499971315	0.848296438987427	0.998431161219273
Merged-chr18-6488389-4	chr18	6488272	6488472	+	778.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001276350)	TTS (NM_001276350)	2274.0	NR_035446	100316773.0		NR_035446	ENSMUSG00000084514	Mir1893	Mirn1893|mmu-mir-1893	microRNA 1893	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120564035-4	chr8	120563946	120564146	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145896, intron 3 of 15)	intron (NM_001145896, intron 3 of 15)	25029.0	NM_178856	272551.0	Mm.275910	NM_178856	ENSMUSG00000031821	Gins2	2210013I18Rik|4833427B12Rik|AI323585|Pfs2	GINS complex subunit 2 (Psf2 homolog)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-33876100-1	chr7	33876000	33876200	+	698.0	f0_balb.idr	Intergenic	RMER20A|LTR|ERVK	68885.0	NM_178308	110187.0	Mm.155750	NM_178308	ENSMUSG00000066586	Scgb2b26	Abpbg26|Abpbg4|Abpg|C2d|Scgb2b4	secretoglobin, family 2B, member 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-79679204-2	chr8	79679094	79679294	+	707.083374	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	32546.0	NM_015751	24015.0	Mm.5831	NM_015751	ENSMUSG00000058355	Abce1	C79080|Oabp|RLI|RNS41|RNS4I|Rnaseli	ATP-binding cassette, sub-family E (OABP), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-34827992-4	chr11	34827904	34828104	+	999.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027411, intron 2 of 11)	Lx7|LINE|L1	5637.0	NM_027411	70385.0	Mm.194368	NM_027411	ENSMUSG00000069910	Spdl1	1700018I02Rik|2600001J17Rik|2810049B11Rik|AA409762|Ccdc99	spindle apparatus coiled-coil protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-3415199-2	chr7	3415099	3415299	+	761.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_128566)	TTS (NR_128566)	133.0	NR_128566	104795667.0		NR_128566	ENSMUSG00000094210	Gm23450	Mir935|mmu-mir-935	predicted gene, 23450	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-105396295-1	chr9	105396195	105396395	+	1000.0	f1_balb.idr	intron (NR_152139, intron 1 of 5)	intron (NR_152139, intron 1 of 5)	933.0	NR_152139	66595.0	Mm.84941	NM_025651	ENSMUSG00000032567	Aste1	1100001A21Rik|AV006403	asteroid homolog 1	protein-coding	1.78042543090347	1.28962577254898	3.14137342279365	1.21827970813885	2.19787283403213	2.20525686639542	3.10247583549942	2.53352638963847	0.852958335788804	0.400166110284883	0.885176145862419
Merged-chr2-157259924-3	chr2	157259824	157260024	+	679.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039557, intron 4 of 24)	intron (NM_001039557, intron 4 of 24)	-19174.0	NM_001355163	20014.0	Mm.22130	NM_019642	ENSMUSG00000027642	Rpn2	1300012C06Rik|AV261018|Rpn-2	ribophorin II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140758824-2	chr5	140758724	140758924	+	929.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34697.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-135414097-2	chr3	135413997	135414197	+	549.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025902, intron 1 of 2)	intron (NM_025902, intron 1 of 2)	9336.0	NM_025902	67006.0	Mm.269993	NM_025902	ENSMUSG00000028165	Cisd2	1500009M05Rik|1500026J14Rik|1500031D15Rik|AI848398|B630006A20Rik|Miner1|Naf-1|Noxp70|Zcd2	CDGSH iron sulfur domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-29033885-3	chr17	29033776	29033976	+	847.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_036613, intron 1 of 6)	B1_Mm|SINE|Alu	1216.0	NR_036613	20383.0	Mm.6787	NM_013663	ENSMUSG00000071172	Srsf3	AL024116|Sfrs3|X16	serine/arginine-rich splicing factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-70535048-4	chr4	70534948	70535148	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172694)	promoter-TSS (NM_172694)	-120.0	NM_172694	230316.0	Mm.251188	NM_172694	ENSMUSG00000039270	Megf9	4933405H16Rik|9630025C07|Egfl5|mKIAA0818	multiple EGF-like-domains 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-47068464-2	chr11	47068345	47068545	+	703.099976	f1_balb.idr|f1_c57bl6.idr	intron (NM_011891, intron 6 of 7)	intron (NM_011891, intron 6 of 7)	257646.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	2.7435969427016	4.28706530327811	3.64826630995113	3.187067797512	3.39587342002595	1.62114725510243	2.48358554877662	2.39770608536209	-1.53887427617995	0.0365508577828638	0.271372024553713
Merged-chr2-178413541-2	chr2	178413441	178413641	+	717.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081289)	promoter-TSS (NM_001081289)	922.0	NM_001085501	228966.0	Mm.472736	NM_001085501	ENSMUSG00000049999	Ppp1r3d	2610024M03Rik|Gm359	protein phosphatase 1, regulatory subunit 3D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-136891116-3	chr2	136891056	136891256	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028201)	promoter-TSS (NM_028201)	-62.0	NM_028201	74243.0	Mm.330612	NM_028201	ENSMUSG00000027281	Slx4ip	2210009G21Rik|2410004I22Rik|C85661|Slxip	SLX4 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-30362467-1	chr18	30362367	30362567	+	550.0	f1_c57bl6.idr	Intergenic	Intergenic	89602.0	NR_151699	225326.0	Mm.194127	NM_181414	ENSMUSG00000033628	Pik3c3	5330434F23Rik|Vps34	phosphatidylinositol 3-kinase catalytic subunit type 3	protein-coding	-1.18378942727406	-1.15669478905697	-0.457913181653105	-1.17806440097404	-1.18323730008524	-1.15415234459186	-1.16577117532349	-1.17633933179771	-2.81844548480871	0.412768592413622	1
Merged-chr2-174932911-3	chr2	174932790	174932990	+	911.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	134879.0	NM_001085546	664987.0		NM_001085546	ENSMUSG00000078905	Gm14393	-	predicted gene 14393	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-156960123-1	chr2	156960023	156960223	+	588.0	f0_balb.idr	intron (NM_001355394, intron 1 of 15)	Lx3_Mus|LINE|L1	31580.0	NM_001355391	29812.0	Mm.279256	NM_013865	ENSMUSG00000027634	Ndrg3	4833415O14Rik|AI747193|Ndr3	N-myc downstream regulated gene 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-29947933-4	chr16	29947845	29948045	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31179.0	NR_037689	328657.0	Mm.425982	NM_001033403		Gm1968	-	predicted gene 1968	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115535842-4	chr5	115535738	115535938	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011223, intron 1 of 10)	intron (NM_011223, intron 1 of 10)	-23629.0	NM_007475	11837.0	Mm.5286	NM_007475	ENSMUSG00000067274	Rplp0	36B4|Arbp|L10E	ribosomal protein, large, P0	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-7558928-3	chr19	7558817	7559017	+	927.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362425, intron 2 of 4)	MER97c|DNA|hAT-Tip100	1432.0	NM_001362425	225845.0	Mm.274810	NM_139269	ENSMUSG00000060675	Pla2g16	AdPLA|C78643|HRSL3|Hrasls3|Hrev107|MLP-3	phospholipase A2, group XVI	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72235499-3	chr6	72235398	72235598	+	804.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153778)	promoter-TSS (NM_153778)	79.0	NM_153778	71093.0	Mm.87449	NM_153778	ENSMUSG00000037621	Atoh8	4933425C05Rik|Hath6|Math6|bHLHa21|okadin	atonal bHLH transcription factor 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-44484098-4	chr13	44483991	44484191	+	987.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	44364.0	NR_045489	69491.0	Mm.392410	NR_045489	ENSMUSG00000098144	1700029N11Rik	-	RIKEN cDNA 1700029N11 gene	ncRNA	0.38780799524141	0.263484184795701	0.827743476317231	0.41742760768676	0.630355493862232	0.264974071597322	0.941960271406922	0.252647926933054	0.407508527149141	0.823774914915066	1
Merged-chr13-98316854-6	chr13	98316682	98316882	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_137279)	promoter-TSS (NR_137279)	185.0	NM_145455	218490.0	Mm.371688	NM_145455	ENSMUSG00000021660	Btf3	1700054E11Rik	basic transcription factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25082678-2	chr7	25082578	25082778	+	568.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001168506, exon 3 of 3)	3' UTR (NM_001168506, exon 3 of 3)	5871.0	NM_175477	232976.0	Mm.41568	NM_175477	ENSMUSG00000045252	Zfp574	A630056B21Rik|Znf574	zinc finger protein 574	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-180307592-2	chr2	180307492	180307692	+	600.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17713.0	NM_173031	271887.0	Mm.246640	NM_173031	ENSMUSG00000038980	Rbbp8nl	4732416F18	RBBP8 N-terminal like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-68012015-2	chr16	68011915	68012115	+	674.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-391107.0	NM_178721	239857.0	Mm.394300	NM_178721	ENSMUSG00000064115	Cadm2	2900078E11Rik|9330131D06|A830029E02Rik|Igdf4d|Igsf4d|NECL3|SynCAM 2|SynCAM2	cell adhesion molecule 2	protein-coding	-0.0199220019314105	0.0163725439935231	0.89758335383026	-0.00428320982393621	-0.0175552406349501	0.018926306408621	1.53534811412722	-0.00267335651972622	1.31239437820154	0.5380858770347	0.953987935079648
Merged-chr10-19031153-4	chr10	19031054	19031254	+	976.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15744.0	NM_009397	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-141301168-2	chr3	141301068	141301268	+	913.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	-88813.0	NM_008811	18598.0	Mm.4223	NM_008811	ENSMUSG00000047674	Pdha2	Pdhal	pyruvate dehydrogenase E1 alpha 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-69255937-2	chr17	69255837	69256037	+	562.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355736, intron 9 of 21)	intron (NM_001355736, intron 9 of 21)	21269.0	NR_045428	69750.0	Mm.439063	NR_045428	ENSMUSG00000100572	2410021H03Rik	-	RIKEN cDNA 2410021H03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91405242-2	chr16	91405142	91405342	+	979.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008349)	promoter-TSS (NM_008349)	-993.0	NM_008349	16155.0	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-146727723-1	chr5	146727623	146727823	+	621.0	f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	67233.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	0.732678202011021	0.362555028402995	0.354874696916096	0.793256150659285	0.340490191410863	1.00950200886942	1.06231379901566	0.349967997263806	0.929329130176511	0.61595031383976	1
Merged-chr9-64697455-2	chr9	64697355	64697555	+	758.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001134399, intron 21 of 24)	intron (NM_001134399, intron 21 of 24)	40301.0	NM_017382	53869.0	Mm.1387	NM_017382	ENSMUSG00000004771	Rab11a	-	RAB11A, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-99110388-3	chr9	99110271	99110471	+	653.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029094, intron 2 of 23)	intron (NM_029094, intron 2 of 23)	29840.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-17590446-2	chr6	17590371	17590571	+	654.5	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46539.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	0.811237279339741	1.52734652301639	0.592087911183051	1.21482698836989	0.356418635388653	0.390532582644606	0.379636260818152	0.370186372541699	-4.64049417867882	0.00772898808716778	0.0908547345556881
Merged-chr7-7133091-3	chr7	7133051	7133251	+	845.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029584, exon 4 of 4)	exon (NM_029584, exon 4 of 4)	3604.0	NM_029584	76373.0	Mm.159732	NM_029584	ENSMUSG00000063535	Zfp773	2810409K11Rik	zinc finger protein 773	protein-coding	-0.359808469219535	-0.340546819672153	0.0382471609102188	-0.35163658185106	-0.358584321526125	-0.33915267505766	-0.345396615718841	0.805356652336704	2.19805669325167	0.383659065693625	1
Merged-chr4-117191912-3	chr4	117191819	117192019	+	874.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	-9295.0	NM_134471	73804.0	Mm.247651	NM_134471	ENSMUSG00000028678	Kif2c	4930402F02Rik|ESTM5|Knsl6|MCAK|X83316	kinesin family member 2C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-126677122-2	chr2	126677022	126677222	+	564.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271470)	promoter-TSS (NM_001271470)	-785.0	NM_001271470	14391.0	Mm.293266	NM_010249	ENSMUSG00000027361	Gabpb1	BABPB2|E4TF1|E4TF1-47|E4TF1-53|E4Tf1B|GABPB|GABPB-1|GABPB-2|GABPB1-1|GABPB1-2|NRF2B1|NRF2B2	GA repeat binding protein, beta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70788680-2	chr11	70788580	70788780	+	790.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23881.0	NM_001045526	327957.0	Mm.164325	NM_001045526	ENSMUSG00000057135	Scimp	A430084P05Rik	SLP adaptor and CSK interacting membrane protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-79072721-4	chr12	79072614	79072814	+	969.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181073, intron 20 of 28)	intron (NM_181073, intron 20 of 28)	16956.0	NM_029988	110417.0	Mm.268317	NM_029988	ENSMUSG00000021120	Pigh	2210416H01Rik|A930028P05Rik	phosphatidylinositol glycan anchor biosynthesis, class H	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-51644525-2	chr11	51644425	51644625	+	573.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_145974, exon 4 of 5)	exon (NM_145974, exon 4 of 5)	-6429.0	NR_027958	97775.0	Mm.220299	NM_175289	ENSMUSG00000052563	D930048N14Rik	AI315703|R75254	RIKEN cDNA D930048N14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-27457528-3	chr16	27457421	27457621	+	842.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	68565.0	NM_001289436	67501.0	Mm.258985	NM_026202	ENSMUSG00000038127	Ccdc50	C3orf6	coiled-coil domain containing 50	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-24538726-2	chr8	24538626	24538826	+	707.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145949, intron 8 of 9)	intron (NM_145949, intron 8 of 9)	37607.0	NM_145949	209176.0	Mm.219580	NM_145949	ENSMUSG00000031549	Ido2	AI265623|C230043N17Rik|Ido-2|Indol1	indoleamine 2,3-dioxygenase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-32911502-4	chr19	32911421	32911621	+	718.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	153944.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-28374608-4	chr15	28374522	28374722	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133365, intron 52 of 78)	intron (NM_133365, intron 52 of 78)	170856.0	NM_133365	110082.0	Mm.248464	NM_133365	ENSMUSG00000022262	Dnah5	AU022615|Dnahc5|Mdnah5|b2b1134Clo|b2b1154Clo|b2b1537Clo|b2b1565Clo|b2b3491Clo|b2b601Clo|mKIAA1603	dynein, axonemal, heavy chain 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-83575571-4	chr9	83575463	83575663	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172507, intron 1 of 3)	MLT1A0|LTR|ERVL-MaLR	27225.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-148761605-4	chr6	148761513	148761713	+	936.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	69854.0	NM_001081113	320727.0	Mm.260105	NM_001081113	ENSMUSG00000040029	Ipo8	6230418K12Rik|Abcc10|C130009K11Rik|MRP7|OM-1|Om1|Ranbp8	importin 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-76262637-3	chr13	76262546	76262746	+	927.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-122315.0	NM_030174	78771.0	Mm.316249	NM_030174	ENSMUSG00000021596	Mctp1	2810465F10Rik	multiple C2 domains, transmembrane 1	protein-coding	1.02320441934601	1.42088933691728	0.624772187857385	0.616363786771369	0.604340581160613	1.31789999389686	1.13761253032353	1.09536933821101	0.410417440248283	0.792420599020825	0.998431161219273
Merged-chr14-64306787-2	chr14	64306687	64306887	+	562.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253714, intron 1 of 4)	intron (NM_001253714, intron 1 of 4)	110169.0	NM_001253716	110265.0	Mm.26713	NM_026322	ENSMUSG00000054733	Msra	2310045J23Rik|6530413P12Rik|MSR-A	methionine sulfoxide reductase A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-95823813-2	chr15	95823713	95823913	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_155276)	TTS (NR_155276)	6259.0	NR_155277	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-8519632-4	chr12	8519503	8519703	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19594.0	NM_007483	11852.0	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	3.93837052519255	4.00870540349113	5.51261585915509	3.21619889494795	3.97068685314164	4.59148609099482	3.90359692585589	3.11724568305388	-0.612661075487195	0.279668831194825	0.782890022556117
Merged-chr6-34359229-4	chr6	34359135	34359335	+	965.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008012, intron 4 of 9)	intron (NM_008012, intron 4 of 9)	5089.0	NM_008012	14187.0	Mm.5378	NM_008012	ENSMUSG00000029762	Akr1b8	FR-1|Fgfrp|Fgrp	aldo-keto reductase family 1, member B8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-88821704-2	chr15	88821604	88821804	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029720, intron 4 of 9)	intron (NM_029720, intron 4 of 9)	2058.0	NM_029720	76737.0	Mm.292567	NM_029720	ENSMUSG00000023272	Creld2	5730592L21Rik|C85758	cysteine-rich with EGF-like domains 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-61128877-2	chr18	61128777	61128977	+	558.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037859, intron 17 of 21)	intron (NM_001037859, intron 17 of 21)	11409.0	NR_105949	102466212.0		NR_105949	ENSMUSG00000098389	Mir6983	Gm27496|mmu-mir-6983	microRNA 6983	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80293001-2	chr10	80292901	80293101	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009091, intron 2 of 3)	B1_Mus1|SINE|Alu	492.0	NM_001310726	20054.0	Mm.643	NM_009091	ENSMUSG00000063457	Rps15	rig	ribosomal protein S15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117341957-2	chr8	117341857	117342057	+	806.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	-7213.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71531694-3	chr17	71531597	71531797	+	765.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4840.0	NM_023294	67052.0	Mm.225956	NM_023294	ENSMUSG00000024056	Ndc80	2610020P18Rik|AV139730|HEC|HEC1|Kntc2	NDC80 kinetochore complex component	protein-coding	3.17054579912061	3.28383903876656	3.57307276048157	3.60371507755427	3.33386539135258	2.68688573744504	2.59584931414447	3.10260380226492	-0.744319198305579	0.215616861722498	0.706180188649098
Merged-chr5-43845231-3	chr5	43845107	43845307	+	950.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23602.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10280747-2	chr19	10280647	10280847	+	959.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_198114, intron 1 of 19)	intron (NM_198114, intron 1 of 19)	24130.0	NM_198114	269060.0	Mm.329718	NM_198114	ENSMUSG00000035735	Dagla	Nsddr	diacylglycerol lipase, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-58832947-4	chr6	58832893	58833093	+	806.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028705)	promoter-TSS (NM_028705)	-707.0	NM_028705	73998.0	Mm.191892	NM_028705	ENSMUSG00000029804	Herc3	5730409F18Rik|AI646603|mKIAA0032	hect domain and RLD 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-97084245-1	chr5	97084145	97084345	+	718.0	f1_balb.idr	intron (NM_198422, intron 6 of 6)	intron (NM_198422, intron 6 of 6)	27351.0	NM_001359910	231474.0	Mm.332505	NM_198422	ENSMUSG00000055725	Paqr3	6330415A20Rik|AY424292|RKTG	progestin and adipoQ receptor family member III	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-46644880-3	chr17	46644783	46644983	+	811.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357130, intron 1 of 15)	intron (NM_001357130, intron 1 of 15)	1197.0	NM_001357130	74764.0	Mm.279599	NM_029091	ENSMUSG00000003546	Klc4	1200014P03Rik|AA408085|AW146303|Knsl8	kinesin light chain 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-120335164-1	chr14	120335064	120335264	+	540.0	f1_c57bl6.idr	intron (NM_001360376, intron 2 of 8)	intron (NM_001360376, intron 2 of 8)	28712.0	NM_001360376	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107757566-3	chr9	107757473	107757673	+	728.3222049999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153191, intron 5 of 23)	intron (NR_153191, intron 5 of 23)	13429.0	NM_148930	83486.0	Mm.259197	NM_148930	ENSMUSG00000032580	Rbm5	D030069N10Rik	RNA binding motif protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80621474-2	chr10	80621374	80621574	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1306.0	NM_134002	103236.0	Mm.29873	NM_134002	ENSMUSG00000003345	Csnk1g2	2810429I12Rik|AI463719	casein kinase 1, gamma 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53077656-2	chr4	53077556	53077756	+	585.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 19 of 49)	intron (NM_013454, intron 19 of 49)	65776.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-149247749-4	chr5	149247645	149247845	+	988.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17259.0	NM_001308462	11690.0	Mm.19844	NM_009663	ENSMUSG00000060063	Alox5ap	Flap	arachidonate 5-lipoxygenase activating protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-46456931-2	chr12	46456831	46457031	+	838.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	361844.0	NM_021361	664883.0	Mm.247195	NM_021361	ENSMUSG00000021047	Nova1	9430099M15Rik|G630039L02|Nova-1	neuro-oncological ventral antigen 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150864144-3	chr4	150864042	150864242	+	804.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133753, intron 1 of 3)	intron (NM_133753, intron 1 of 3)	9072.0	NM_133753	74155.0	Mm.318841	NM_133753	ENSMUSG00000028967	Errfi1	1300002F13Rik|AI788755|Mig-6|Mig6|RALT	ERBB receptor feedback inhibitor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-43394147-2	chr11	43394047	43394247	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19686.0	NR_029558	387164.0		NR_029558	ENSMUSG00000065601	Mir146	Mirn146|miR-146a|mmu-mir-146	microRNA 146	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70601429-4	chr8	70601338	70601538	+	960.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133772, intron 4 of 16)	CpG	6876.0	NM_133772	76900.0	Mm.6667	NM_133772	ENSMUSG00000070003	Ssbp4	1210002E11Rik|AW743380|Sspb4	single stranded DNA binding protein 4	protein-coding	1.44747452141611	2.1269813156042	1.71349772997349	1.98352808113426	1.14938035847984	1.01427658456655	0.993834584391952	2.08373503739752	-1.29878378062025	0.285558040634106	0.79013454422523
Merged-chr16-38758693-4	chr16	38758588	38758788	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152434, intron 4 of 6)	intron (NR_152434, intron 4 of 6)	16429.0	NM_001285793	56375.0	Mm.182377	NM_019804	ENSMUSG00000022793	B4galt4	9130402O08Rik|B4galt-IV|b4Gal-T4|beta4Gal-T4|beta4GalT-IV	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-40744416-4	chr9	40744327	40744527	+	963.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133733, intron 1 of 6)	intron (NM_133733, intron 1 of 6)	-56846.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	2.12283801322678	1.21256586864612	2.31195603309105	1.16153640669959	1.68225554907649	2.41584234983033	2.59941179207874	1.9117405350489	0.963643860422913	0.36729955463905	0.862214284611162
Merged-chr5-34591847-2	chr5	34591747	34591947	+	564.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001024458, intron 1 of 14)	intron (NM_001024458, intron 1 of 14)	17696.0	NR_106111	102466999.0		NR_106111	ENSMUSG00000099082	Mir7036b	Gm27625|mmu-mir-7036b	microRNA 7036b	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97781235-2	chr11	97781135	97781335	+	803.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_028078)	TTS (NR_028078)	531.0	NR_028078	100302498.0	Mm.453536	NR_028078	ENSMUSG00000064901	Snora21	MBI-3	small nucleolar RNA, H/ACA box 21	snoRNA	1.78057872339248	2.87646656488405	1.25391424416211	2.77291795124555	1.79657785717766	2.89859363094237	1.26264376292601	2.78782301997745	0.034998534464813	0.972901917527722	0.998431161219273
Merged-chr11-74650411-3	chr11	74650312	74650512	+	714.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081158, intron 1 of 25)	intron (NM_001081158, intron 1 of 25)	917.0	NM_001081158	74148.0	Mm.214574	NM_001081158	ENSMUSG00000020741	Cluh	1300001I01Rik|Kiaa0664|mKIAA0664	clustered mitochondria (cluA/CLU1) homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-70652351-4	chr18	70652218	70652418	+	988.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	84026.0	NM_010773	17191.0	Mm.322	NM_010773	ENSMUSG00000024513	Mbd2	MBD2a	methyl-CpG binding domain protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105330225-2	chr8	105330125	105330325	+	645.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_177699, exon 19 of 22)	exon (NM_177699, exon 19 of 22)	3861.0	NM_025486	66320.0	Mm.29990	NM_025486	ENSMUSG00000014856	Tmem208	1700006C06Rik|2610030K20Rik|Hspc171	transmembrane protein 208	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-92646416-2	chr1	92646316	92646516	+	654.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153114, intron 1 of 4)	intron (NM_153114, intron 1 of 4)	2425.0	NM_153114	260301.0	Mm.219545	NM_153114	ENSMUSG00000044055	Otos	OTOSP	otospiralin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-68657122-4	chr11	68657010	68657210	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34805.0	NM_175260	77579.0	Mm.218233	NM_175260	ENSMUSG00000020900	Myh10	5730504C04Rik|9330167F11Rik|Fltn|Myhn-2|Myhn2|NMHC II-B|NMHC-B|NMHCII-B|NMMHC II-b|NMMHC-B|NMMHC-IIB|SMemb|mKIAA3005	myosin, heavy polypeptide 10, non-muscle	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83368335-2	chr6	83368235	83368435	+	926.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_183138, exon 11 of 11)	exon (NM_183138, exon 11 of 11)	18851.0	NM_175277	78653.0	Mm.391470	NM_175277	ENSMUSG00000045160	Bola3	1810056O20Rik	bolA-like 3 (E. coli)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-56901221-7	chr6	56900967	56901167	+	874.857117	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360963, intron 1 of 9)	intron (NM_001360963, intron 1 of 9)	819.0	NM_001252374	107569.0	Mm.158936	NM_026004	ENSMUSG00000029780	Nt5c3	1600024P05Rik|2610206B05Rik|3110004A18Rik|AI842776|Nt5c3a|Nt5y|P5'N-1|P5N-1|PN-1|PN-I|PSN1|UMPH|Umph-1|Umph1|cN-III|lupin|p36	5'-nucleotidase, cytosolic III	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-135630057-4	chr1	135629899	135630099	+	927.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32223.0	NR_151586	215714.0	Mm.472859	NM_175447		Gm4793	EG215714	predicted gene 4793	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127529169-2	chr10	127529069	127529269	+	867.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_183297, intron 1 of 1)	intron (NM_183297, intron 1 of 1)	5390.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-11061042-4	chr19	11060951	11061151	+	905.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	-10485.0	NR_102366	107350.0	Mm.6381	NM_001177351	ENSMUSG00000075010	AW112010	-	expressed sequence AW112010	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141536764-5	chr4	141536645	141536845	+	811.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347235, intron 1 of 14)	CpG	1852.0	NM_001347235	56381.0	Mm.299906	NM_019763	ENSMUSG00000040761	Spen	Mint|mKIAA0929	spen family transcription repressor	protein-coding	2.25863790009289	2.11036280214341	1.39126447679422	2.5853613041995	2.9659209509366	2.12579102979694	2.2118686085104	2.98815967666232	1.04205725333406	0.235180106120712	0.731386965587429
Merged-chr2-173658030-2	chr2	173657930	173658130	+	589.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_027957, intron 2 of 14)	intron (NR_027957, intron 2 of 14)	1509.0	NR_027957	100043911.0	Mm.260590	NM_001033179	ENSMUSG00000055897	Ppp4r1l-ps	1700007P14Rik|5830403E09Rik|C030010B13Rik|Ppp4r1l	protein phosphatase 4, regulatory subunit 1-like, pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-128602104-4	chr8	128601947	128602147	+	899.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-83607.0	NM_010578	16412.0	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-7171293-4	chr7	7171195	7171395	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146179)	promoter-TSS (NM_146179)	-58.0	NM_146179	232854.0	Mm.184857	NM_146179	ENSMUSG00000034538	Zfp418	A230102I05Rik	zinc finger protein 418	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-109130342-4	chr3	109130253	109130453	+	930.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172685, intron 1 of 9)	intron (NM_172685, intron 1 of 9)	7204.0	NM_172685	229731.0	Mm.33574	NM_172685	ENSMUSG00000040322	Slc25a24	2610016M12Rik	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-10882314-2	chr8	10882214	10882414	+	923.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_040705, intron 1 of 5)	intron (NR_040705, intron 1 of 5)	140.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-63378504-2	chr10	63378404	63378604	+	601.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3939.0	NM_001253685	30045.0	Mm.32550	NM_013888	ENSMUSG00000036764	Dnajc12	Jdp1|mJDP1	DnaJ heat shock protein family (Hsp40) member C12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-106374759-2	chr1	106374659	106374859	+	644.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133821, intron 12 of 16)	Lx7|LINE|L1	171872.0	NR_106164	102466254.0		NR_106164	ENSMUSG00000098344	Mir3473f	Gm27846|mmu-mir-3473f	microRNA 3473f	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-5064409-2	chr11	5064309	5064509	+	732.166687	f1_balb.idr|f1_c57bl6.idr	exon (NM_001190406, exon 2 of 5)	exon (NM_001190406, exon 2 of 5)	918.0	NM_144560	78926.0	Mm.44591	NM_030228	ENSMUSG00000034201	Gas2l1	4930500E24Rik|D0Jmb1|Gar22|TU-71.1	growth arrest-specific 2 like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100607533-4	chr7	100607433	100607633	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163663)	promoter-TSS (NM_001163663)	-53.0	NM_024287	19346.0	Mm.28650	NM_024287	ENSMUSG00000030704	Rab6a	2610028L11Rik|AA419671|Rab6	RAB6A, member RAS oncogene family	protein-coding	5.09680084786843	4.69201575548228	5.28545532790715	4.82192655800081	4.66974843859289	4.2914185293193	5.09219656026097	4.95480839558496	-0.251756175695757	0.464175807750371	0.92226616093689
Merged-chr15-82148758-3	chr15	82148665	82148865	+	827.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033218, intron 1 of 18)	intron (NM_033218, intron 1 of 18)	1496.0	NM_033218	20788.0	Mm.38016	NM_033218	ENSMUSG00000022463	Srebf2	AI608257|SREBP-2|SREBP2|SREBP2gc|bHLHd2|lop13|nuc	sterol regulatory element binding factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5842416-4	chr19	5842389	5842589	+	911.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_003513, exon 1 of 1)	non-coding (NR_003513, exon 1 of 1)	2989.0	NR_131212	66961.0	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-74546341-2	chr11	74546241	74546441	+	903.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001015046, intron 2 of 24)	B3|SINE|B2	43817.0	NM_001015046	380711.0	Mm.425690	NM_001015046	ENSMUSG00000038807	Rap1gap2	AU067654|Garnl4|Gm1561|mKIAA1039	RAP1 GTPase activating protein 2	protein-coding	2.63447754574791	2.35712552293786	1.33802003544854	2.32769908427735	2.85183033896874	2.37493098609515	1.34592240950079	2.63286580772602	0.367357815520386	0.707193371799821	0.998431161219273
Merged-chr11-94869977-2	chr11	94869870	94870070	+	651.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20377.0	NM_001205037	432591.0	Mm.370372	NM_001205037		Gm11544	-	predicted gene 11544	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-94590478-4	chr16	94590375	94590575	+	964.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113389, intron 1 of 11)	intron (NM_001113389, intron 1 of 11)	19568.0	NM_001113389	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-9180463-4	chr13	9180344	9180544	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	86563.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70676523-2	chr8	70676423	70676623	+	676.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_015816, intron 1 of 4)	intron (NM_015816, intron 1 of 4)	3292.0	NM_015816	50783.0	Mm.248188	NM_015816	ENSMUSG00000031848	Lsm4	-	LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-22080788-1	chr3	22080688	22080888	+	573.0	f1_balb.idr	intron (NM_030732, intron 1 of 15)	intron (NM_030732, intron 1 of 15)	4136.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124803924-2	chr6	124803824	124804024	+	632.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4737.0	NM_001306051	14794.0	Mm.261906	NM_013539	ENSMUSG00000038451	Spsb2	AI461677|C9|Grcc9|SSB2	splA/ryanodine receptor domain and SOCS box containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-35130816-4	chr4	35130732	35130932	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178061, intron 1 of 3)	intron (NM_178061, intron 1 of 3)	-21223.0	NM_199157	387510.0	Mm.386929	NM_199157	ENSMUSG00000042993	Ifnk	-	interferon kappa	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-103995629-2	chr12	103995545	103995745	+	856.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001361910)	TTS (NM_001361910)	-5688.0	NM_001166350	380780.0	Mm.201338	NM_199314	ENSMUSG00000063232	Serpina11	Gm895	serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 11	protein-coding	-2.05752322593321	-2.15521190974092	-2.16307242109104	-2.16952927915413	-2.17938029103484	-2.15350850414045	-2.16129297361887	-2.16837350464794	-0.683654500252594	0.846597994014493	1
Merged-chr3-41743986-4	chr3	41743909	41744109	+	998.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291048, intron 1 of 4)	intron (NM_001291048, intron 1 of 4)	1391.0	NM_027271	73852.0	Mm.29006	NM_027271	ENSMUSG00000025766	D3Ertd751e	2810009O15Rik|4930415G15Rik	DNA segment, Chr 3, ERATO Doi 751, expressed	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-35703118-4	chr18	35703025	35703225	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029669)	promoter-TSS (NM_029669)	19.0	NM_029669	76594.0	Mm.108596	NM_029669	ENSMUSG00000024350	Dnajc18	2700075B01Rik|AU041129	DnaJ heat shock protein family (Hsp40) member C18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-61084665-4	chr19	61084560	61084760	+	999.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018869, intron 12 of 15)	intron (NM_018869, intron 12 of 15)	56180.0	NR_131956	414758.0	Mm.100056	NM_001001737	ENSMUSG00000074733	Zfp950	5830428H23Rik|AU016073|BC055757|Gm34518|Zfp826|mszf84	zinc finger protein 950	protein-coding	3.41102928973537	4.42921805743824	3.62130184341345	3.67990713303104	4.47165218232147	4.094364279765	4.56042621367032	3.53545988430691	0.533137980260988	0.269764916113823	0.772959591673376
Merged-chr18-36426279-2	chr18	36426179	36426379	+	848.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_026027, intron 3 of 3)	intron (NM_026027, intron 3 of 3)	28216.0	NM_026027	67199.0	Mm.30184	NM_026027	ENSMUSG00000024346	Pfdn1	2700086I23Rik|AA408327|AU044714	prefoldin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-77423053-4	chr8	77422956	77423156	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030113, intron 5 of 22)	intron (NM_030113, intron 5 of 22)	-94000.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70465968-2	chr11	70465868	70466068	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001348337, exon 14 of 14)	exon (NM_001348337, exon 14 of 14)	-5984.0	NM_023158	66102.0	Mm.425692	NM_023158	ENSMUSG00000018920	Cxcl16	0910001K24Rik|AV290116|BB024863|CXCL16v1|CXCL16v2|SR-PSOX|Zmynd15|b2b498Clo	chemokine (C-X-C motif) ligand 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-42110732-3	chr19	42110626	42110826	+	957.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145501, intron 4 of 8)	L1MC4|LINE|L1	18267.0	NM_027106	69534.0	Mm.30060	NM_027106	ENSMUSG00000018821	Avpi1	2310008N12Rik|AA410041|VIT32|esu|mVIT32	arginine vasopressin-induced 1	protein-coding	3.84716417190968	2.76021515746994	1.60611410140427	2.42868849442484	3.48768042495101	3.16566014140304	3.25497616896162	3.96807957243308	0.913099821084319	0.211147327095491	0.700323931057359
Merged-chr2-32452113-4	chr2	32452006	32452206	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164357)	promoter-TSS (NM_001164357)	-636.0	NM_146118	227731.0	Mm.37395	NM_146118	ENSMUSG00000026819	Slc25a25	1110030N17Rik|MCSC|mKIAA1896	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-56614525-1	chr13	56614425	56614625	+	603.5	f0_balb.idr	intron (NR_155548, intron 2 of 16)	(TG)n|Simple_repeat|Simple_repeat	4939.0	NR_155548	21810.0	Mm.14455	NM_009369	ENSMUSG00000035493	Tgfbi	68kDa|AI181842|AI747162|Beta-ig|big-h3	transforming growth factor, beta induced	protein-coding	1.63513870489182	1.9831510708859	2.49987538575595	2.23942134160028	1.64673160115183	1.99703647516661	2.51947105349859	2.25082409006426	0.0370684362309564	0.96777572221346	0.998431161219273
Merged-chr5-137745927-4	chr5	137745818	137746018	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029805)	promoter-TSS (NM_029805)	-51.0	NM_023910	78829.0	Mm.286399	NM_023910	ENSMUSG00000029723	Tsc22d4	0610009M14Rik|1700023B23Rik|AI415410|Thg-1pit|Tilz2	TSC22 domain family, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-64737838-2	chr17	64737738	64737938	+	602.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008549, intron 19 of 21)	intron (NM_008549, intron 19 of 21)	-29273.0	NR_105051	101202683.0	Mm.393309	NR_105051		Dreh	-	down-regulated in hepatocellular carcinoma	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3833050-4	chr19	3833033	3833233	+	898.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18640.0	NM_001271496	12660.0	Mm.225505	NM_013490	ENSMUSG00000024843	Chka	CK|CK/EK-alpha|Chetk-alpha|Chk|ChoK|EK|EtnK-alpha	choline kinase alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89433047-2	chr3	89432947	89433147	+	655.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001293763, exon 3 of 3)	exon (NM_001293763, exon 3 of 3)	2210.0	NM_026869	68911.0	Mm.22521	NM_026869	ENSMUSG00000047824	Pygo2	1190004M21Rik	pygopus 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-143166207-2	chr6	143166107	143166307	+	619.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1023.0	NM_029250	75320.0	Mm.272548	NM_029250	ENSMUSG00000030275	Etnk1	1110061E11Rik|4930555L11Rik|AI195356|AI841245|C80956|D6Ertd3e|EKI1	ethanolamine kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45742566-3	chr7	45742492	45742692	+	834.277771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360784)	promoter-TSS (NM_001360784)	-114.0	NM_001360784	54200.0	Mm.271634	NM_017465	ENSMUSG00000003271	Sult2b1	AI326997|BB173635|ST2B1|SULT2B	sulfotransferase family, cytosolic, 2B, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-115066546-2	chr13	115066446	115066646	+	547.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033228, intron 1 of 28)	L1MB5|LINE|L1	23612.0	NM_134058	105083.0	Mm.486295	NM_134058	ENSMUSG00000042275	Pelo	AA409897|AI852218	pelota mRNA surveillance and ribosome rescue factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-108749376-2	chr10	108749275	108749475	+	585.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358501, intron 3 of 10)	intron (NM_001358501, intron 3 of 10)	-49215.0	NM_203660	368203.0	Mm.452758	NM_203660	ENSMUSG00000112039	Gm5136	C6.1AL|EG368203	predicted gene 5136	protein-coding	-1.05877568042897	-1.03501312238488	-1.04817210678232	-1.05426068996071	-1.05810152525527	-1.03216151557194	-0.188696606725984	-1.05378786495764	3.16074139804981	0.330468818528456	1
Merged-chr10-80574601-2	chr10	80574501	80574701	+	654.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_078477, intron 1 of 1)	B1_Mus1|SINE|Alu	2695.0	NM_078477	118445.0	Mm.41513	NM_078477	ENSMUSG00000035397	Klf16	AI843742|BTEB4|DRRF	Kruppel-like factor 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-40745298-4	chr3	40745202	40745402	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011020)	promoter-TSS (NM_011020)	-311.0	NM_011020	18415.0	Mm.39330	NM_011020	ENSMUSG00000025757	Hspa4l	94kDa|AI461691|APG-1|Osp94	heat shock protein 4 like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-87700647-3	chr4	87700546	87700746	+	681.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	105677.0	NM_001286158	70122.0	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141315894-2	chr4	141315794	141315994	+	560.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010139, intron 3 of 16)	intron (NM_010139, intron 3 of 16)	14673.0	NM_010139	13836.0	Mm.2581	NM_010139	ENSMUSG00000006445	Epha2	AW545284|Eck|Myk2|Sek-2|Sek2	Eph receptor A2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-33185303-2	chr15	33185203	33185403	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_018755, intron 2 of 8)	intron (NM_018755, intron 2 of 8)	102174.0	NM_176073	54381.0	Mm.158251	NM_018755	ENSMUSG00000039007	Cpq	1190003P12Rik|2610034C17Rik|Hls2|Lal-1|Pgcp	carboxypeptidase Q	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-112734126-2	chr13	112734026	112734226	+	633.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_178746, exon 15 of 15)	3' UTR (NM_178746, exon 15 of 15)	-66651.0	NM_008903	19012.0	Mm.291029	NM_008247	ENSMUSG00000021759	Plpp1	Hic53|Hpic53|LPP-1|LPP1|PAP-2a|PAP2-alpha|PAP2a|Ppap2a|mPAP	phospholipid phosphatase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-138261689-4	chr1	138261554	138261754	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12084.0	NM_177397	338375.0	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-97580418-4	chr1	97580302	97580502	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC1|LINE|L1	81274.0	NM_001355074	52392.0	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-103970180-3	chr8	103970094	103970294	+	968.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-131431.0	NM_009868	12562.0	Mm.21767	NM_009868	ENSMUSG00000031871	Cdh5	7B4|AA408225|Cd144|VE-Cad|VECD|VEcad|Vec	cadherin 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-60768693-2	chr11	60768593	60768793	+	642.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009410, intron 1 of 18)	intron (NM_009410, intron 1 of 18)	8672.0	NM_009410	21975.0	Mm.10708	NM_009410	ENSMUSG00000002814	Top3a	-	topoisomerase (DNA) III alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84257284-4	chr8	84257208	84257408	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026423)	promoter-TSS (NM_026423)	16.0	NM_026423	67873.0	Mm.278085	NM_026423	ENSMUSG00000004996	Mri1	2410018C20Rik	methylthioribose-1-phosphate isomerase 1	protein-coding	3.60735500671242	2.61058108032988	4.09079960206728	4.65709074150114	4.54432687398356	2.98087068740754	3.01267466779161	3.75300936896805	-0.262861411207991	0.670300600967724	0.99359666617512
Merged-chr12-76535762-2	chr12	76535662	76535862	+	895.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_153804, intron 1 of 18)	intron (NM_153804, intron 1 of 18)	2202.0	NM_153804	263406.0	Mm.291854	NM_153804	ENSMUSG00000052609	Plekhg3	BC030417	pleckstrin homology domain containing, family G (with RhoGef domain) member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-137535513-2	chr5	137535413	137535613	+	690.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2207.0	NM_010312	14693.0	Mm.30141	NM_010312	ENSMUSG00000029713	Gnb2	Gnb-2	guanine nucleotide binding protein (G protein), beta 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-45903797-4	chr13	45903717	45903917	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199304, intron 2 of 6)	intron (NM_001199304, intron 2 of 6)	61174.0	NM_001199304	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-17887940-4	chr17	17887812	17888012	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008039)	promoter-TSS (NM_008039)	88.0	NM_008039	14289.0	Mm.378918	NM_008039	ENSMUSG00000052270	Fpr2	E330010I07Rik|Fpr-rs2	formyl peptide receptor 2	protein-coding	3.08290849639802	1.2818304761822	1.25015143083956	2.1223937789621	2.57075914674192	2.41233250457317	1.91125177087339	2.00129886666577	0.100320886326574	0.923724177351369	0.998431161219273
Merged-chr4-59862190-3	chr4	59862101	59862301	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172468, intron 2 of 8)	intron (NM_172468, intron 2 of 8)	52855.0	NM_021053	30936.0	Mm.284433	NM_021053	ENSMUSG00000028386	Slc46a2	5430429N04Rik|Ly110|TSO-1C12|Tscot	solute carrier family 46, member 2	protein-coding	4.40299542987111	3.04572170070943	3.15393238279569	3.93001011794691	3.01259681893668	2.45480397900207	2.15853007692571	2.741833114827	-1.82848416132727	0.00520781432372152	0.0689154664588355
Merged-chr2-120136466-2	chr2	120136366	120136566	+	839.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_133838, intron 2 of 5)	intron (NM_133838, intron 2 of 5)	18109.0	NM_133838	98878.0	Mm.132226	NM_133838	ENSMUSG00000027293	Ehd4	2210022F10Rik|AI197390|AI846352|AV006278|Past2	EH-domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-33821974-2	chr17	33821829	33822029	+	681.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_030697, intron 8 of 10)	intron (NM_030697, intron 8 of 10)	2633.0	NM_016844	54127.0	Mm.352374	NM_016844	ENSMUSG00000067288	Rps28	-	ribosomal protein S28	protein-coding	1.67885112417394	2.10719216034812	1.57582460310854	1.65980037542259	1.87726132678418	1.04525020115905	1.58815866090281	1.01100221457951	-1.05258095029228	0.377415334857395	0.8703669632789
Merged-chr8-104250892-4	chr8	104250781	104250981	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286383)	promoter-TSS (NM_001286383)	20.0	NM_001286383	75458.0	Mm.269219	NM_029295	ENSMUSG00000054400	Cklf	1700001C14Rik|1810018M11Rik|A730028G07Rik|C32|CKLF1|CKLF3|CKLF4|CKLF5|Cklf2|Cklf6|HSPC224|UCK-1	chemokine-like factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115474129-2	chr11	115474029	115474229	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001080934, exon 4 of 4)	3' UTR (NM_001080934, exon 4 of 4)	-1538.0	NM_177778	276905.0	Mm.38019	NM_177778	ENSMUSG00000057219	Armc7	A630084C13|BC023126	armadillo repeat containing 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-24712410-4	chr16	24712329	24712529	+	724.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 7 of 12)	intron (NM_178665, intron 7 of 12)	-9426.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-122067148-4	chr7	122067073	122067273	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138589)	promoter-TSS (NM_138589)	-25.0	NM_138589	28018.0	Mm.282122	NM_138589	ENSMUSG00000030870	Ubfd1	AI467302|D7Wsu105e|D7Wsu128e|Ubph	ubiquitin family domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89183125-3	chr3	89183026	89183226	+	862.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001014995)	promoter-TSS (NM_001014995)	-17.0	NM_001355760	68521.0	Mm.274708	NM_001014995	ENSMUSG00000032657	Fam189b	1110013L07Rik	family with sequence similarity 189, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-68252988-4	chr18	68252897	68253097	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357444, intron 3 of 3)	intron (NM_001357444, intron 3 of 3)	7976.0	NR_106078	102465702.0		NR_106078	ENSMUSG00000098253	Mir7219	Gm27613|mmu-mir-7219	microRNA 7219	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-36812573-4	chr8	36812459	36812659	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001194940, intron 4 of 17)	intron (NM_001194940, intron 4 of 17)	-79505.0	NM_001194941	50768.0	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-94574149-4	chr16	94574058	94574258	+	989.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113389, intron 1 of 11)	intron (NM_001113389, intron 1 of 11)	3251.0	NM_001113389	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-29986819-4	chr17	29986755	29986955	+	767.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18184.0	NM_148926	21769.0	Mm.220972	NM_148926	ENSMUSG00000044477	Zfand3	AW539211|TEG-27|Tex27	zinc finger, AN1-type domain 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123375448-2	chr5	123375348	123375548	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-19350.0	NM_133917	208104.0	Mm.83277	NM_133917	ENSMUSG00000038342	Mlxip	AW228700|Mir|bHLHe36	MLX interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85698190-2	chr12	85698090	85698290	+	577.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016767, intron 2 of 2)	CpG	11470.0	NM_016767	53314.0	Mm.6672	NM_016767	ENSMUSG00000034266	Batf	B-ATF|SFA-2	basic leucine zipper transcription factor, ATF-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-24965919-2	chr2	24965819	24966019	+	884.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355560, intron 2 of 5)	B2_Mm1a|SINE|B2	3497.0	NM_026044	67228.0	Mm.389248	NM_026044	ENSMUSG00000026975	Dph7	2810443J12Rik|AW060693|Wdr85	diphthamine biosynethesis 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-124682450-3	chr4	124682347	124682547	+	812.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026031, exon 5 of 8)	exon (NM_026031, exon 5 of 8)	11107.0	NM_026031	67205.0	Mm.259121	NM_026031	ENSMUSG00000028907	Utp11	2700082D03Rik|CGI-94|Cgi94|Utp11l	UTP11 small subunit processome component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-25089203-2	chr12	25089106	25089306	+	618.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR15|LTR|ERVK	6886.0	NM_010496	15902.0	Mm.34871	NM_010496	ENSMUSG00000020644	Id2	AI255428|C78922|Idb2|bHLHb26	inhibitor of DNA binding 2	protein-coding	0.274710869913221	0.139065823029017	0.325251990219253	0.126207706084376	0.118206497575535	0.140689988618471	0.963524008643376	0.907116419036631	2.68021029246829	0.186723548610438	1
Merged-chr1-180765570-2	chr1	180765470	180765670	+	677.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39527.0	NM_133225	170760.0	Mm.272981	NM_133225	ENSMUSG00000026499	Acbd3	60kDa|8430407O11Rik|D1Ertd10e|GCP60|GOLPH1|Gocap1|Pap7	acyl-Coenzyme A binding domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-114849142-2	chr6	114849042	114849242	+	798.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253718, intron 19 of 19)	intron (NM_001253718, intron 19 of 19)	72679.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120886681-2	chr11	120886581	120886781	+	854.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_027745, intron 10 of 18)	intron (NM_027745, intron 10 of 18)	46191.0	NM_027745	71276.0	Mm.275751	NM_027745	ENSMUSG00000048445	Ccdc57	4933434G05Rik	coiled-coil domain containing 57	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-84059459-4	chr2	84059349	84059549	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-118223.0	NM_027964	71861.0	Mm.116957	NM_027964	ENSMUSG00000034552	Zswim2	1700025P14Rik|4933437F18Rik|MEX	zinc finger SWIM-type containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-35171694-2	chr6	35171594	35171794	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-5922.0	NM_027513	70699.0	Mm.261208	NM_027513	ENSMUSG00000038759	Nup205	3830404O05Rik|AV248391|mKIAA0225	nucleoporin 205	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-92557888-1	chr7	92557788	92557988	+	586.0	f1_c57bl6.idr	Intergenic	L1_Mus1|LINE|L1	-3261.0	NM_025515	66365.0	Mm.21173	NM_025515	ENSMUSG00000030613	Ccdc90b	2310015N07Rik|C86558	coiled-coil domain containing 90B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47500700-2	chr17	47500600	47500800	+	572.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356290, intron 2 of 7)	B2_Mm2|SINE|B2	1591.0	NM_001356290	63856.0	Mm.275901	NM_022015	ENSMUSG00000023980	Taf8	AW260255|Tbn	TATA-box binding protein associated factor 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139323755-2	chr5	139323655	139323855	+	856.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172723, intron 1 of 10)	MIRb|SINE|MIR	1709.0	NM_172723	231821.0	Mm.297819	NM_172723	ENSMUSG00000056413	Adap1	4930431P11Rik|Centa1|GC1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141619110-3	chr4	141619000	141619200	+	959.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145987)	promoter-TSS (NM_145987)	-467.0	NR_151462	213989.0	Mm.34891	NM_145987	ENSMUSG00000043085	Tmem82	-	transmembrane protein 82	protein-coding	1.5260807897724	0.654916117636845	1.51648009431022	0.633011580609281	1.07352073343298	0.657663729467774	1.53170077424821	0.63469825876254	-0.50807465578137	0.754336416496319	0.998431161219273
Merged-chr7-141009903-2	chr7	141009803	141010003	+	953.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025378, intron 1 of 1)	intron (NM_025378, intron 1 of 1)	841.0	NM_025378	66141.0	Mm.141021	NM_025378	ENSMUSG00000025492	Ifitm3	1110004C05Rik|Cd225|Cdw217|DSPA2b|Fgls|IP15|mil-1	interferon induced transmembrane protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35997797-2	chr17	35997697	35997897	+	895.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NR_015618, intron 1 of 1)	B4A|SINE|B4	3293.0	NR_015618	77810.0	Mm.483143	NR_015618		A930015D03Rik	-	RIKEN cDNA A930015D03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-49970674-4	chr16	49970577	49970777	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9783.0	NR_045001	628951.0	Mm.428032	NR_045001		Gm6936	-	predicted gene 6936	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-31314204-4	chr6	31314100	31314300	+	970.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040261, intron 3 of 4)	intron (NR_040261, intron 3 of 4)	84573.0	NR_040300	100503869.0	Mm.370532	NR_040300	ENSMUSG00000086212	Mkln1os	Gm13845	muskelin 1, intracellular mediator containing kelch motifs, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-32558291-4	chr11	32558170	32558370	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 2 of 18)	MER5A|DNA|hAT-Charlie	25004.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-3694265-4	chr7	3694188	3694388	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029934)	promoter-TSS (NM_029934)	-220.0	NM_024168	66078.0	Mm.379100	NM_024168	ENSMUSG00000035585	Tsen34	0610027F08Rik|Leng5	tRNA splicing endonuclease subunit 34	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-101609247-4	chr14	101609142	101609342	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081278)	promoter-TSS (NM_001081278)	-51.0	NM_001081278	210789.0	Mm.320639	NM_173380	ENSMUSG00000033083	Tbc1d4	5930406J04Rik|A930035N22|AV295684|As160	TBC1 domain family, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70692633-2	chr8	70692533	70692733	+	548.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-5106.0	NM_010592	16478.0	Mm.419851	NM_010592	ENSMUSG00000071076	Jund	Jund1	jun D proto-oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120234077-3	chr11	120234018	120234218	+	826.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198423, intron 1 of 27)	CpG	1171.0	NM_198423	268515.0	Mm.309498	NM_198423	ENSMUSG00000039741	Bahcc1	B930044J06|BC060615	BAH domain and coiled-coil containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124011608-4	chr5	124011533	124011733	+	805.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177876, intron 1 of 3)	intron (NM_177876, intron 1 of 3)	14781.0	NR_105999	102465625.0		NR_105999	ENSMUSG00000098454	Mir7032	Gm27309|mmu-mir-7032	microRNA 7032	ncRNA	2.63157067033072	1.65557772915939	2.39655741118039	2.43296705227761	2.22634067245455	1.3941741128982	2.15999938501182	2.98867290215126	-0.0053751536260201	0.995401144267279	0.998491424894068
Merged-chr10-84774819-4	chr10	84774716	84774916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024918, intron 1 of 17)	intron (NM_001024918, intron 1 of 17)	18768.0	NM_001024918	71137.0	Mm.79070	NM_027689	ENSMUSG00000020037	Rfx4	4933412G19Rik|NYD-sp10	regulatory factor X, 4 (influences HLA class II expression)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-116679782-4	chr6	116679697	116679897	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5961.0	NM_178045	213391.0	Mm.257931	NM_178045	ENSMUSG00000042129	Rassf4	3830411C14Rik|AD037|AI586137	Ras association (RalGDS/AF-6) domain family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-36381946-7	chr12	36381808	36382008	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289503)	promoter-TSS (NM_001289503)	-239.0	NM_001289503	75847.0	Mm.261764	NM_178629	ENSMUSG00000043153	Ispd	4930579E17Rik|AV040780	isoprenoid synthase domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127333359-2	chr10	127333259	127333459	+	715.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_010296, intron 11 of 12)	B2_Mm2|SINE|B2	7717.0	NM_001359657	216445.0	Mm.227198	NM_146011	ENSMUSG00000040345	Arhgap9	AU043488	Rho GTPase activating protein 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-30592334-1	chr14	30592234	30592434	+	739.0	f1_balb.idr	Intergenic	RLTR12E|LTR|ERVK	17976.0	NM_001310682	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-12008289-4	chr15	12008160	12008360	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Rod|LINE|L1	-12253.0	NM_011294	20024.0	Mm.41746	NM_011294	ENSMUSG00000022205	Sub1	AI842364|P15|P9|Pc4|Rpo2tc1	SUB1 homolog (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-97786175-4	chr15	97786044	97786244	+	971.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026353, intron 1 of 2)	intron (NM_026353, intron 1 of 2)	1779.0	NM_026353	67739.0	Mm.28955	NM_026353	ENSMUSG00000081534	Slc48a1	4930570C03Rik	solute carrier family 48 (heme transporter), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-89021688-3	chr11	89021623	89021823	+	955.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	22320.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	2.20906323874798	2.62876145140392	1.54286074967749	1.90903000722862	3.69271860031889	1.3095646119093	1.98762459265827	2.66959947186063	1.19583828586987	0.212254734928404	0.70170722758217
Merged-chr9-70783408-4	chr9	70783313	70783513	+	802.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC5|LINE|L1	104431.0	NM_007399	11487.0	Mm.3037	NM_007399	ENSMUSG00000054693	Adam10	1700031C13Rik|MADM|kuz|kuzbanian	a disintegrin and metallopeptidase domain 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-48842733-2	chr6	48842633	48842833	+	813.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001098271, intron 3 of 6)	intron (NM_001098271, intron 3 of 6)	1077.0	NM_001098271	66058.0	Mm.27061	NM_025326	ENSMUSG00000023367	Tmem176a	0610011I04Rik|AU040201|AU041743|Keg2	transmembrane protein 176A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152437509-2	chr1	152437409	152437609	+	595.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177756, intron 1 of 11)	IAP-d-int|LTR|ERVK	37642.0	NM_177756	269132.0	Mm.23782	NM_177756	ENSMUSG00000032649	Colgalt2	AI427652|D730024P12|Glt25d2	collagen beta(1-O)galactosyltransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-132420810-2	chr1	132420710	132420910	+	712.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172516, intron 1 of 12)	intron (NM_172516, intron 1 of 12)	3357.0	NM_172516	213452.0	Mm.257120	NM_172516	ENSMUSG00000042046	Dstyk	A930019K20Rik|C430014H23Rik|C820013G01|Ripk5	dual serine/threonine and tyrosine protein kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-62600562-2	chr10	62600462	62600662	+	551.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019553, intron 1 of 14)	B2_Mm1t|SINE|B2	1736.0	NM_019553	56200.0	Mm.413275	NM_019553	ENSMUSG00000020075	Ddx21	AI255159|AL022742|D10Ertd645e|D10Wsu42e	DEAD (Asp-Glu-Ala-Asp) box polypeptide 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-125363495-1	chr5	125363395	125363595	+	744.5	f0_balb.idr	Intergenic	Intergenic	-22401.0	NM_001205083	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75967115-2	chr11	75967015	75967215	+	802.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-32797.0	NM_198637	74230.0	Mm.271247	NM_198637	ENSMUSG00000053783	1700016K19Rik	Liat1	RIKEN cDNA 1700016K19 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-45478660-3	chr17	45478562	45478762	+	857.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3724.0	NM_001357831	71020.0	Mm.44257	NM_027649	ENSMUSG00000023935	Spats1	1700011H05Rik|4933400B06Rik|Ddip|Srsp1	spermatogenesis associated, serine-rich 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-84784517-2	chr2	84784417	84784617	+	594.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9088.0	NM_009776	12258.0	Mm.38888	NM_009776	ENSMUSG00000023224	Serping1	C1INH|C1nh	serine (or cysteine) peptidase inhibitor, clade G, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117355695-2	chr8	117355595	117355795	+	838.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028941, intron 1 of 20)	intron (NM_028941, intron 1 of 20)	6525.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-114173886-1	chr5	114173786	114173986	+	590.0	f1_balb.idr	intron (NM_133904, intron 1 of 51)	intron (NM_133904, intron 1 of 51)	8368.0	NM_133904	100705.0	Mm.81793	NM_133904	ENSMUSG00000042010	Acacb	AI597064|AW743042|Acc2|Accb	acetyl-Coenzyme A carboxylase beta	protein-coding	0.0652522241419767	0.100238352980273	0.0890828029782401	0.0802783752943568	1.17114049455785	0.102714913699435	1.43294760243577	0.0818293995758393	4.64992617000901	0.0234103944286316	0.199846092435938
Merged-chr3-87619292-4	chr3	87619194	87619394	+	944.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360197, intron 1 of 38)	intron (NM_001360197, intron 1 of 38)	1735.0	NM_001360195	213498.0	Mm.287267	NM_001003912	ENSMUSG00000041977	Arhgef11	PDZ-RhoGEF|Prg|RhoGEF|mKIAA0380	Rho guanine nucleotide exchange factor (GEF) 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-22842591-1	chr11	22842491	22842691	+	762.5	f0_balb.idr	intron (NM_001169114, intron 1 of 1)	intron (NM_001169114, intron 1 of 1)	17144.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-62451033-1	chr10	62450933	62451133	+	551.0	f1_c57bl6.idr	non-coding (NR_027926, exon 1 of 1)	non-coding (NR_027926, exon 1 of 1)	-1295.0	NM_181423	338359.0	Mm.235898	NM_181423	ENSMUSG00000020079	Supv3l1	6330443E10Rik	suppressor of var1, 3-like 1 (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-46449003-4	chr18	46448929	46449129	+	736.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16787.0	NR_045438	72076.0	Mm.82766	NM_028086		Mospd4	2010013H21Rik	motile sperm domain containing 4	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-19916056-3	chr14	19915974	19916174	+	947.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285910, intron 1 of 2)	intron (NM_001285910, intron 1 of 2)	60619.0	NM_001285911	14702.0	Mm.41737	NM_010315	ENSMUSG00000043004	Gng2	-	guanine nucleotide binding protein (G protein), gamma 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-58935235-2	chr15	58935135	58935335	+	679.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_023172, intron 1 of 3)	B4A|SINE|B4	1425.0	NM_023172	66218.0	Mm.322294	NM_023172	ENSMUSG00000022354	Ndufb9	1190008J14Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-35379371-4	chr8	35379276	35379476	+	994.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177741, intron 1 of 1)	intron (NM_177741, intron 1 of 1)	3635.0	NM_177741	244416.0	Mm.247126	NM_177741	ENSMUSG00000046794	Ppp1r3b	6430576E21|AW821953|GL|PTG	protein phosphatase 1, regulatory (inhibitor) subunit 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5836955-2	chr19	5836855	5837055	+	890.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_131212, exon 1 of 1)	non-coding (NR_131212, exon 1 of 1)	8523.0	NR_131212	66961.0	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-78378563-1	chr9	78378463	78378663	+	619.0	f1_c57bl6.idr	promoter-TSS (NM_026480)	promoter-TSS (NM_026480)	25.0	NM_026480	67968.0	Mm.26883	NM_026480	ENSMUSG00000032346	Ooep	2410146L05Rik|Floped|Moep19|Sddr	oocyte expressed protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5830155-3	chr17	5830053	5830253	+	928.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11227.0	NM_025664	66616.0	Mm.89515	NM_025664	ENSMUSG00000002365	Snx9	2700073N08Rik|SDP1|SH3PX1	sorting nexin 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-46474900-4	chr18	46474809	46475009	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa-int|LTR|ERVL-MaLR	-9093.0	NR_045438	72076.0	Mm.82766	NM_028086		Mospd4	2010013H21Rik	motile sperm domain containing 4	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-145469532-1	chr2	145469432	145469632	+	569.0	f0_c57.idr	intron (NM_053195, intron 3 of 16)	intron (NM_053195, intron 3 of 16)	85450.0	NM_001037929	627302.0	Mm.445953	NM_001037929		Gm14092	-	predicted gene 14092	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-79723044-2	chr7	79722944	79723144	+	766.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175640, intron 7 of 8)	MIRc|SINE|MIR	-8858.0	NM_001291222	16576.0	Mm.101633	NM_010626	ENSMUSG00000050382	Kif7	-	kinesin family member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107975434-4	chr9	107975315	107975515	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023738)	promoter-TSS (NM_023738)	-152.0	NM_023738	74153.0	Mm.277125	NM_023738	ENSMUSG00000032596	Uba7	1300004C08Rik|Ube1l	ubiquitin-like modifier activating enzyme 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-151142400-4	chr5	151142301	151142501	+	908.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153382, intron 1 of 13)	intron (NR_153382, intron 1 of 13)	47792.0	NM_001163493	243362.0	Mm.209272	NM_146258	ENSMUSG00000016128	Stard13	DLC2|GT650	StAR-related lipid transfer (START) domain containing 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-33901891-4	chr1	33901791	33901991	+	908.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177235, intron 1 of 6)	Lx9|LINE|L1	5730.0	NM_177235	320705.0	Mm.336619	NM_177235	ENSMUSG00000042182	Bend6	B230209C24Rik	BEN domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115765387-4	chr11	115765295	115765495	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028014)	promoter-TSS (NM_028014)	-38.0	NM_028014	71947.0	Mm.23168	NM_028014	ENSMUSG00000020747	Tmem94	2310067B10Rik|Kiaa0195|mKIAA0195	transmembrane protein 94	protein-coding	5.40687571266588	4.45703716966199	5.01351201957109	5.71164678616898	4.90330281161813	5.16469491118831	6.13390348233205	5.73538994344336	0.38363806072949	0.282234340937881	0.784878071602676
Merged-chr8-46292862-2	chr8	46292762	46292962	+	675.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173789, intron 3 of 3)	intron (NM_173789, intron 3 of 3)	1809.0	NM_173789	234219.0	Mm.145631	NM_173789	ENSMUSG00000047171	Helt	A830086M02|Hesl|Heslike|Mgn|megane	helt bHLH transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-127359512-4	chr6	127359445	127359645	+	908.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51578.0	NR_073373	232386.0	Mm.257367	NR_073373	ENSMUSG00000107153	Gm38404	D130058E03	predicted gene, 38404	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-42829102-4	chr13	42828965	42829165	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005740, intron 1 of 12)	intron (NM_001005740, intron 1 of 12)	-37182.0	NM_001302636	218194.0	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-39484588-1	chr7	39484488	39484688	+	841.0	f0_c57.idr	Intergenic	B2_Mm2|SINE|B2	-33178.0	NM_001004139	70227.0	Mm.333800	NM_001004139	ENSMUSG00000068959	Zfp619	3000002G13Rik	zinc finger protein 619	protein-coding	1.23132847839035	1.28130444244665	1.92677670441143	0.868026134870522	0.644205360656341	0.68946619758926	0.675088874245204	1.43712397383598	-1.88468315404634	0.207246168345449	0.695344049413819
Merged-chr19-25673629-2	chr19	25673529	25673729	+	639.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_145831, exon 2 of 4)	exon (NM_145831, exon 2 of 4)	1218.0	NM_145831	226049.0	Mm.275572	NM_145831	ENSMUSG00000048138	Dmrt2	Terra	doublesex and mab-3 related transcription factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45127260-2	chr7	45127160	45127360	+	743.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_000003)	promoter-TSS (NR_000003)	203.0	NR_000002	27209.0		NR_000002	ENSMUSG00000065219	Snord32a	Rnu32|Rnu32a|U32|U32A	small nucleolar RNA, C/D box 32A	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-30173386-3	chr6	30173275	30173475	+	738.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_126541, intron 1 of 1)	CpG	750.0	NR_126540	101447999.0		NR_126540		Mirc35hg	-	microRNA cluster 35, host gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-25767005-2	chr14	25766905	25767105	+	643.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001101433, intron 1 of 3)	intron (NM_001101433, intron 1 of 3)	1851.0	NM_001101433	71918.0	Mm.41904	NM_001101433	ENSMUSG00000055538	Zcchc24	2310047A01Rik	zinc finger, CCHC domain containing 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-19048405-4	chr2	19048310	19048510	+	878.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50091.0	NR_024323	74629.0	Mm.117687	NR_024323	ENSMUSG00000026736	4930426L09Rik	-	RIKEN cDNA 4930426L09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-51507090-1	chr6	51506990	51507190	+	733.0	f1_c57bl6.idr	Intergenic	B4|SINE|B4	-16813.0	NM_001361582	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	0.3322181881098	0.803114453316341	0.356751479337279	0.347658208422962	0.3345435269471	0.614648695352261	1.63303817964737	1.12573970108623	3.02856744769756	0.0979917218297354	0.486827014331709
Merged-chr6-114268919-4	chr6	114268830	114269030	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13705.0	NM_178703	232333.0	Mm.5260	NM_178703	ENSMUSG00000030310	Slc6a1	A730043E01|GABATHG|GABATR|GAT-1|Gabt|Gabt1|Gat1|XT-1|Xtrp1	solute carrier family 6 (neurotransmitter transporter, GABA), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-81222049-4	chr13	81221962	81222162	+	963.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 85 of 89)	L1_Mur3|LINE|L1	257988.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-63240252-2	chr17	63240152	63240352	+	948.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_015794, intron 6 of 8)	intron (NM_015794, intron 6 of 8)	72721.0	NR_130176	414079.0	Mm.444282	NR_130176	ENSMUSG00000090565	4930405O22Rik	-	RIKEN cDNA 4930405O22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101108456-4	chr7	101108358	101108558	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146010)	promoter-TSS (NM_001146010)	-317.0	NM_001146010	207278.0	Mm.263041	NM_199012	ENSMUSG00000030691	Fchsd2	BC034086|R74866|Sh3md3|mKIAA0769	FCH and double SH3 domains 2	protein-coding	5.17494385000536	4.66786322443006	5.1698701350507	4.28949491157908	5.36937853705551	3.50473773286503	4.65426925780206	5.03430850563584	-0.0793377960904916	0.851213670983029	0.998431161219273
Merged-chr9-104264430-2	chr9	104264330	104264530	+	669.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1500.0	NM_001163026	235567.0	Mm.217256	NM_001163026	ENSMUSG00000032560	Dnajc13	D030002L11Rik|Gm1124|RME-8|Rme8|mKIAA0678	DnaJ heat shock protein family (Hsp40) member C13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-24995042-4	chr19	24994930	24995130	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4499.0	NM_028785	76088.0	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	4.41442265261612	3.49288905993056	3.90719577078209	3.9994255190393	4.28733057063907	4.33939451185174	4.8126498713654	3.95549947825335	0.50092946166984	0.25622405280103	0.755078480147395
Merged-chr7-29954997-3	chr7	29954885	29955085	+	730.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178384)	promoter-TSS (NM_178384)	-920.0	NM_178384	72723.0	Mm.371648	NM_178384	ENSMUSG00000059975	Zfp74	2810054M15Rik|KRAB8|Zfp66|Znf569|mszf21|mszf77|zfp-74	zinc finger protein 74	protein-coding	3.15012705498938	3.67311481900095	3.24581114929796	2.47198914307816	3.74715552112018	2.65980248534047	3.3565865638451	2.63026037193281	-0.00130519170007088	0.998411078784136	0.999479715059607
Merged-chr17-35236489-4	chr17	35236392	35236592	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023179)	promoter-TSS (NM_023179)	-104.0	NM_023179	66237.0	Mm.396107	NM_023179	ENSMUSG00000024403	Atp6v1g2	1500002D01Rik|Atp6g2|NG38|VAG2	ATPase, H+ transporting, lysosomal V1 subunit G2	protein-coding	3.10155439256212	4.15415052712648	3.28653654967446	3.61112716354233	3.33726001819387	2.58818512682048	1.57737091405214	2.23634897426985	-1.63967758197417	0.0221620263448584	0.192309541045524
Merged-chr12-12370124-2	chr12	12370024	12370224	+	903.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001146119, intron 11 of 11)	intron (NM_001146119, intron 11 of 11)	22351.0	NR_045829	70858.0	Mm.410838	NR_045829	ENSMUSG00000114136	4921511I17Rik	-	RIKEN cDNA 4921511I17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-94713904-4	chr16	94713796	94713996	+	873.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	102477.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-6793665-4	chr17	6793626	6793826	+	859.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10946.0	NM_009510	22350.0	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-28011058-2	chr3	28010958	28011158	+	562.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008875, intron 1 of 25)	intron (NM_008875, intron 1 of 25)	26887.0	NM_008875	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-60683493-4	chr13	60683340	60683540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	81229.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-114736477-2	chr13	114736377	114736577	+	747.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVL-int|LTR|ERVL	-81760.0	NM_013826	17434.0	Mm.19027	NM_013826	ENSMUSG00000015536	Mocs2	AI415403	molybdenum cofactor synthesis 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-13301379-4	chr9	13301344	13301544	+	788.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54488.0	NM_025534	66396.0	Mm.290620	NM_025534	ENSMUSG00000079084	Ccdc82	2310043N13Rik	coiled-coil domain containing 82	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-111986630-4	chr10	111986542	111986742	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_028608, exon 4 of 6)	exon (NM_028608, exon 4 of 6)	10622.0	NM_028608	73690.0	Mm.173790	NM_028608	ENSMUSG00000056888	Glipr1	2410114O14Rik|RTVP-1|RTVP1|mRTVP-1	GLI pathogenesis-related 1 (glioma)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-88371948-2	chr10	88371848	88372048	+	970.625	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7464.0	NM_001004164	432486.0	Mm.335190	NM_001004164	ENSMUSG00000035311	Gnptab	EG432486|mKIAA1208	N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115323827-2	chr11	115323727	115323927	+	737.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001362400, intron 3 of 7)	intron (NM_001362400, intron 3 of 7)	1297.0	NM_001362400	237987.0	Mm.44542	NM_172801	ENSMUSG00000050201	Otop2	4732464P15	otopetrin 2	protein-coding	-0.716103810256239	-0.512937885007076	-0.709401218148495	-0.711924321015215	-0.570024265668853	-0.705385622006071	-0.708679199111842	-0.0780881191651885	2.25239736861609	0.407566123327128	1
Merged-chr3-116712238-4	chr3	116712133	116712333	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001362374)	promoter-TSS (NM_001362374)	47.0	NM_144902	229782.0	Mm.190758	NM_144902	ENSMUSG00000027957	Slc35a3	2310050P13Rik	solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-24729905-1	chr1	24729805	24730005	+	541.0	f1_balb.idr	intron (NM_026719, intron 8 of 15)	MTEb-int|LTR|ERVL-MaLR	50987.0	NM_001310483	68421.0	Mm.336563	NM_026719	ENSMUSG00000073725	Lmbrd1	0910001K20Rik|AV347960	LMBR1 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-24387384-4	chr7	24387300	24387500	+	997.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12228.0	NM_028047	71997.0	Mm.150977	NM_028047	ENSMUSG00000002210	Smg9	1500002O20Rik|AI429693|N28092	smg-9 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	2.44590742302462	4.26780948969157	3.02846364909934	3.41933030694402	1.31838379047397	1.51891692783184	3.24104671757191	3.13682824418081	-1.42470360766493	0.291598238567864	0.796128548904676
Merged-chr11-109367040-4	chr11	109366938	109367138	+	916.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010303, intron 2 of 3)	intron (NM_010303, intron 2 of 3)	-3384.0	NR_038097	100036768.0	Mm.467767	NR_038097	ENSMUSG00000056687	Gm11696	-	predicted gene 11696	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-41044050-1	chr9	41043950	41044150	+	587.0	f1_c57bl6.idr	intron (NM_176860, intron 4 of 13)	intron (NM_176860, intron 4 of 13)	35456.0	NM_001357412	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	0.326866904605174	0.806324547413663	0.646188320915694	0.0602157590025298	0.204509115093967	0.0722939633066455	0.0662240070002846	0.0610329816578217	-3.24824348685999	0.113903655557124	1
Merged-chr7-96849133-3	chr7	96849029	96849229	+	983.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011858, intron 22 of 32)	L1MA5A|LINE|L1	-47580.0	NR_045874	791381.0	Mm.402112	NR_045874	ENSMUSG00000053049	Gm15413	-	predicted gene 15413	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-6390872-4	chr15	6390725	6390925	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037905, intron 1 of 13)	intron (NM_001037905, intron 1 of 13)	4077.0	NM_001310446	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-120174217-2	chr14	120174117	120174317	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC1|LINE|L1	-101452.0	NM_207515	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-100644234-4	chr9	100644131	100644331	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009282, intron 1 of 33)	CpG	783.0	NM_001357265	20842.0	Mm.42135	NM_009282	ENSMUSG00000037286	Stag1	AU045003|SA-1|Scc3	stromal antigen 1	protein-coding	3.17971283811672	2.56113345019702	2.79255435800628	3.58283220834358	3.8795784575443	4.14971591820957	3.29386832567678	3.90736799370069	1.14397767425373	0.0427486381636766	0.296358721506814
Merged-chr13-113616628-7	chr13	113616449	113616649	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130796, intron 1 of 1)	intron (NM_130796, intron 1 of 1)	2015.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-128659655-1	chr4	128659555	128659755	+	544.0	f1_balb.idr	intron (NM_001195130, intron 1 of 14)	intron (NM_001195130, intron 1 of 14)	4953.0	NM_001195130	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-50470636-4	chr17	50470523	50470723	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38924.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	4.59145321768969	3.79912969921858	4.39489134340309	3.8722197730144	4.55765147871662	3.82734638242758	4.37491596418471	3.89189891974801	-0.0114558058565403	0.979316364868203	0.998431161219273
Merged-chr9-108095785-4	chr9	108095691	108095891	+	764.395813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_007567)	TTS (NM_007567)	-1311.0	NM_146226	235606.0	Mm.219639	NM_146226	ENSMUSG00000032590	Apeh	-	acylpeptide hydrolase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-31817624-3	chr11	31817471	31817671	+	911.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_102310)	TTS (NR_102310)	6976.0	NR_102310	414116.0	Mm.150222	NR_102310	ENSMUSG00000085772	D630024D03Rik	-	RIKEN cDNA D630024D03 gene	ncRNA	2.14871941677577	1.69366894186219	3.2793365212932	3.63686499422611	3.3511259620725	3.21572906738172	4.24070030440287	3.93627918771275	1.28083016055678	0.0653253008933329	0.382950957712479
Merged-chr1-138079635-2	chr1	138079535	138079735	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001268286, intron 21 of 28)	intron (NM_001268286, intron 21 of 28)	95491.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10841010-2	chr19	10840910	10841110	+	615.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1534.0	NM_023044	65221.0	Mm.27387	NM_023044	ENSMUSG00000024737	Slc15a3	Ci1|cI-1	solute carrier family 15, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-40858744-2	chr12	40858644	40858844	+	562.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	-165346.0	NM_053122	93757.0	Mm.363813	NM_053122	ENSMUSG00000056899	Immp2l	AI853880|IMP2|Tg(HLA-A/H2-D)2Enge	IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-75551209-2	chr17	75551109	75551309	+	916.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357860, intron 1 of 6)	intron (NM_001357860, intron 1 of 6)	737.0	NM_133747	72722.0	Mm.24641	NM_133747	ENSMUSG00000002017	Fam98a	2810405J04Rik|AL024114	family with sequence similarity 98, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-54579000-2	chr13	54578900	54579100	+	765.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019968, intron 3 of 3)	intron (NM_019968, intron 3 of 3)	3987.0	NM_019968	56795.0	Mm.89484	NM_019968	ENSMUSG00000025870	Arl10	Arl10a|Arm1	ADP-ribosylation factor-like 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-11459966-2	chr8	11459866	11460066	+	996.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011227, intron 1 of 1)	B1_Mur2|SINE|Alu	-17963.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-39196432-1	chr16	39196332	39196532	+	650.0	f1_c57bl6.idr	Intergenic	RLTR14|LTR|ERV1	-7482.0	NR_153800	102640746.0		NR_153800		Gm36742	-	predicted gene, 36742	ncRNA	2.76175467318507	2.31734809632158	1.22311611251943	2.17110057897519	1.7151481009077	2.21340897619119	1.4794984958377	1.94335360047981	-0.943949884949467	0.350795372439205	0.851344470809322
Merged-chr15-27234949-3	chr15	27234834	27235034	+	993.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-231743.0	NM_020332	11732.0	Mm.265264	NM_020332	ENSMUSG00000022265	Ank	Ankh|D15Ertd221e|ank|mKIAA1581	progressive ankylosis	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-87415313-1	chr14	87415213	87415413	+	782.0	f1_balb.idr	Intergenic	Intergenic	-1270.0	NM_172605	219249.0	Mm.35168	NM_172605	ENSMUSG00000022019	Tdrd3	4732418C03Rik|6720468N18	tudor domain containing 3	protein-coding	0.934373347333135	2.02974926736237	2.13510410859964	0.737482931056511	0.943144796619296	0.785861703431552	2.39200942905989	0.740887930926671	-0.423481903514651	0.763520524857723	0.998431161219273
Merged-chr8-69928217-1	chr8	69928117	69928317	+	585.0	f1_balb.idr	intron (NM_001286450, intron 3 of 12)	intron (NM_001286450, intron 3 of 12)	-25659.0	NM_023312	67184.0	Mm.21162	NM_023312	ENSMUSG00000036199	Ndufa13	2700054G14Rik|AU022060|CDA016|CGI-39|GRIM-19|Grim19	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 13	protein-coding	-1.01141362372852	-0.989706134456912	-1.00316642475632	-1.00675598761451	-1.01071814941888	-0.986789233398088	-1.0001193100737	-0.11057046896199	3.2289113956799	0.314019726092946	1
Merged-chr9-13668978-4	chr9	13668890	13669090	+	842.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173776, intron 1 of 3)	intron (NM_173776, intron 1 of 3)	6530.0	NM_173776	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134094772-4	chr6	134094639	134094839	+	890.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 2 of 8)	intron (NM_001303102, intron 2 of 8)	59039.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	0.680608132495247	0.91754652111609	0.439630845996735	0.591125975805882	0.687258447283039	0.927037640483289	0.613226938604148	0.729504995003652	0.453790588384789	0.769837625192337	1
Merged-chr6-97827518-2	chr6	97827414	97827614	+	682.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113198, intron 1 of 9)	intron (NM_001113198, intron 1 of 9)	20456.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	-2.18233058068552	-2.15536956715525	-2.16352280018114	-2.04193253143548	-2.18043796738662	-2.15360272754651	-2.16167708693786	-2.16902129354933	-0.683654500252594	0.846597994014493	1
Merged-chr5-92486254-2	chr5	92486154	92486354	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007644, intron 1 of 11)	intron (NM_007644, intron 1 of 11)	19403.0	NM_007644	12492.0	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3409206-4	chr12	3409109	3409309	+	847.854126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030694, intron 1 of 2)	intron (NR_030694, intron 1 of 2)	17538.0	NR_030694	100043040.0	Mm.415417	NR_030694	ENSMUSG00000071456	1110002L01Rik	-	RIKEN cDNA 1110002L01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-137830393-4	chr5	137830284	137830484	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153510, intron 3 of 6)	intron (NM_153510, intron 3 of 6)	5894.0	NM_153510	231805.0	Mm.379385	NM_153510	ENSMUSG00000046245	Pilra	AV021745|FDF03	paired immunoglobin-like type 2 receptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97511845-4	chr6	97511750	97511950	+	836.696411	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	-24030.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	1.38605971282581	1.71096851229785	0.632017948203099	0.621231452869769	1.08223238120368	0.648784768501429	0.635067927529272	1.58681569290591	-0.477063718338998	0.766892343648634	0.998431161219273
Merged-chr12-92927670-2	chr12	92927570	92927770	+	805.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	517153.0	NR_126436	75295.0	Mm.243878	NR_126436	ENSMUSG00000113164	4930559C10Rik	-	RIKEN cDNA 4930559C10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-119342077-4	chr13	119341983	119342183	+	833.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001308506, intron 14 of 16)	B3A|SINE|B2	66928.0	NM_008710	18115.0	Mm.132584	NM_008710	ENSMUSG00000116207	Nnt	4930423F13Rik|AI323702|BB168308	nicotinamide nucleotide transhydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-184051998-2	chr1	184051898	184052098	+	545.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_022019, intron 2 of 3)	MER77B|LTR|ERVL	17617.0	NM_022019	63953.0	Mm.404024	NM_022019	ENSMUSG00000039384	Dusp10	2610306G15Rik|AI158871|MKP-5|MKP5	dual specificity phosphatase 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-77154568-2	chr8	77154468	77154668	+	672.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083906, intron 3 of 8)	intron (NM_001083906, intron 3 of 8)	252060.0	NM_001083906	110784.0	Mm.324393	NM_001083906	ENSMUSG00000031618	Nr3c2	MR|Mlr	nuclear receptor subfamily 3, group C, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-8934070-4	chr10	8933961	8934161	+	929.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47991.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-55964145-2	chr17	55964045	55964245	+	972.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_028381, exon 4 of 8)	exon (NM_028381, exon 4 of 8)	-4744.0	NR_108021	100504333.0	Mm.391908	NR_108021	ENSMUSG00000097077	Gm16712	-	predicted gene, 16712	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-57597760-3	chr18	57597661	57597861	+	700.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311063, intron 5 of 5)	MTC|LTR|ERVL-MaLR	40824.0	NR_045360	70157.0	Mm.490532	NR_045360		2210409D07Rik	-	RIKEN cDNA 2210409D07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-45824625-4	chr1	45824544	45824744	+	840.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	29478.0	NM_028599	73674.0	Mm.270376	NM_028599	ENSMUSG00000025995	Wdr75	1300003A18Rik|2410118I19Rik|C77608	WD repeat domain 75	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-17930340-2	chr16	17930240	17930440	+	816.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2121.0	NM_153150	13358.0	Mm.229291	NM_153150	ENSMUSG00000003528	Slc25a1	1300019P08Rik|2610100G11Rik|AI194714|Ctp|Dgsj|Slc20a3	solute carrier family 25 (mitochondrial carrier, citrate transporter), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120659119-2	chr11	120659019	120659219	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175263, intron 2 of 11)	intron (NM_175263, intron 2 of 11)	1718.0	NM_175263	77583.0	Mm.32839	NM_175263	ENSMUSG00000042988	Notum	5730593N15Rik	notum palmitoleoyl-protein carboxylesterase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28960932-2	chr7	28960832	28961032	+	841.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021895, intron 1 of 20)	intron (NM_021895, intron 1 of 20)	1400.0	NM_001360549	60595.0	Mm.81144	NM_021895	ENSMUSG00000054808	Actn4	C77391	actinin alpha 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99055847-3	chr15	99055763	99055963	+	876.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163589, intron 1 of 8)	intron (NM_001163589, intron 1 of 8)	689.0	NM_001163589	19132.0	Mm.2477	NM_013639	ENSMUSG00000023484	Prph	Prph1	peripherin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-52113810-4	chr1	52113634	52113834	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-5704.0	NM_001357627	20846.0	Mm.277406	NM_009283	ENSMUSG00000026104	Stat1	2010005J02Rik|AA408197	signal transducer and activator of transcription 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71553102-3	chr17	71553002	71553202	+	719.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029254, intron 1 of 6)	RMER15|LTR|ERVL	1041.0	NM_029254	70891.0	Mm.477599	NM_029254	ENSMUSG00000052525	Spdya	4921517J08Rik|4930548B21Rik|GS4|MLZ-465|Spdy1	speedy/RINGO cell cycle regulator family, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-100175176-4	chr15	100175092	100175292	+	951.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172819, intron 13 of 32)	intron (NM_172819, intron 13 of 32)	12844.0	NR_037311	100499528.0		NR_037311	ENSMUSG00000092752	Mir3473a	Mir3473|mir-3473a|mmu-mir-3473|mmu-mir-3473a	microRNA 3473a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97523694-2	chr11	97523594	97523794	+	649.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_018873, intron 16 of 19)	intron (NM_018873, intron 16 of 19)	-23354.0	NM_001289118	100141474.0	Mm.482426	NM_001289118	ENSMUSG00000047988	4933428G20Rik	-	RIKEN cDNA 4933428G20 gene	protein-coding	-0.200772927314608	-0.345904181275467	-0.351338581543743	-0.35555878022202	0.704984189747247	-0.344684603041008	-0.147633647184242	-0.354819767776582	3.08597042171146	0.196345439505032	1
Merged-chr6-124860403-2	chr6	124860303	124860503	+	765.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_013533, intron 2 of 4)	intron (NM_013533, intron 2 of 4)	-2716.0	NM_013534	14789.0	Mm.35708	NM_013534	ENSMUSG00000023191	P3h3	BC016431|Grcb|Leprel2	prolyl 3-hydroxylase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53270764-2	chr4	53270664	53270864	+	766.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033139)	promoter-TSS (NR_033139)	-532.0	NR_033139	381524.0	Mm.23351	NM_001033454	ENSMUSG00000086712	AI427809	Gm1659	expressed sequence AI427809	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-84452842-2	chr12	84452742	84452942	+	762.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_173756, intron 1 of 5)	B1_Mur4|SINE|Alu	1334.0	NM_173756	217708.0	Mm.311904	NM_173756	ENSMUSG00000085793	Lin52	5830457H20Rik	lin-52 homolog (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-6402946-4	chr15	6402844	6403044	+	984.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037905, intron 1 of 13)	intron (NM_001037905, intron 1 of 13)	16196.0	NM_001310446	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-55789113-4	chr16	55789016	55789216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33022.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166492031-4	chr2	166491923	166492123	+	984.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	44572.0	NR_015558	319684.0	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-77453936-2	chr8	77453836	77454036	+	569.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030113, intron 1 of 22)	RMER13A1|LTR|ERVK	-63120.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-122528416-3	chr10	122528307	122528507	+	639.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41484.0	NR_040616	319272.0	Mm.411763	NR_040616	ENSMUSG00000112095	A130077B15Rik	-	RIKEN cDNA A130077B15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-45242777-2	chr9	45242677	45242877	+	948.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001198971, intron 2 of 4)	intron (NM_001198971, intron 2 of 4)	23930.0	NR_106054	102466803.0		NR_106054	ENSMUSG00000098361	Mir7086	Gm27643|mmu-mir-7086	microRNA 7086	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-9924763-4	chr19	9924651	9924851	+	789.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25218.0	NM_016692	16319.0	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	0.203179292080896	0.0275984387784858	-0.182373262737384	0.724873020113897	-0.192517980948555	-0.175735391378192	-0.181176312133853	-0.185834475204343	-3.91256244105834	0.0852794673340757	1
Merged-chr4-119223842-2	chr4	119223734	119223934	+	603.5	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5617.0	NM_029198	75180.0	Mm.179335	NM_029198	ENSMUSG00000028642	Tmem269	4930538K18Rik	transmembrane protein 269	protein-coding	2.69274074386507	2.34026244400483	1.658315938602	1.78501691034603	1.34638745245099	2.9895148759073	1.67164582029126	1.41077039645672	-0.272611028335392	0.789065821800036	0.998431161219273
Merged-chr2-173223665-2	chr2	173223565	173223765	+	672.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_022995)	TTS (NM_022995)	-4743.0	NM_001139519	58203.0	Mm.116687	NM_021394	ENSMUSG00000027514	Zbp1	2010010H03Rik|Dai|Dlm1|mZaDLM	Z-DNA binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-139882237-3	chr6	139882131	139882331	+	615.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207683, intron 25 of 31)	intron (NM_207683, intron 25 of 31)	40786.0	NM_011084	18705.0	Mm.333471	NM_011084	ENSMUSG00000030228	Pik3c2g	C80387|PI3K-C2-gamma	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma	protein-coding	3.44982307698526	3.13021306918503	3.32925650805959	1.40880241160015	3.03070304568626	2.43360340450837	2.49642544977804	1.68976617946173	-0.970823529666274	0.256582651911848	0.755516686265955
Merged-chr18-69574504-2	chr18	69574404	69574604	+	705.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 8 of 19)	intron (NM_001361128, intron 8 of 19)	228344.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-46850349-2	chr1	46850249	46850449	+	633.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356416, intron 1 of 10)	intron (NM_001356416, intron 1 of 10)	3269.0	NM_001356416	227059.0	Mm.233889	NM_172653	ENSMUSG00000025986	Slc39a10	2900042E17Rik|5430433I10|Zip10|mKIAA1265	solute carrier family 39 (zinc transporter), member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-50025322-4	chr17	50025258	50025458	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181397, intron 7 of 9)	intron (NM_181397, intron 7 of 9)	165139.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4149536-4	chr19	4149437	4149637	+	911.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011778, exon 2 of 11)	exon (NM_011778, exon 2 of 11)	874.0	NM_011778	23789.0	Mm.276859	NM_011778	ENSMUSG00000024835	Coro1b	-	coronin, actin binding protein 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-6435938-3	chr15	6435828	6436028	+	855.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001008702, intron 11 of 13)	intron (NM_001008702, intron 11 of 13)	-9405.0	NM_013485	12279.0	Mm.29095	NM_013485	ENSMUSG00000022149	C9	-	complement component 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-37048094-4	chr19	37048046	37048246	+	951.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198300, intron 9 of 10)	B3A|SINE|B2	122067.0	NM_001080706	107182.0	Mm.295062	NM_001080706	ENSMUSG00000040565	Btaf1	AI414500|AI447930|E430027O22Rik|TAF170	B-TFIID TATA-box binding protein associated factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-24451789-4	chr5	24451695	24451895	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_139153)	promoter-TSS (NM_139153)	-382.0	NM_001359881	213990.0	Mm.250703	NM_139153	ENSMUSG00000023353	Agap3	AGAP-3|AV028425|Centg3|Crag|Crag.|MRIP-1|cnt-g3	ArfGAP with GTPase domain, ankyrin repeat and PH domain 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-89235499-1	chr7	89235399	89235599	+	552.0	f0_balb.idr	intron (NM_001360746, intron 5 of 14)	intron (NM_001360746, intron 5 of 14)	103288.0	NM_028343	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-95341080-4	chr4	95340970	95341170	+	950.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-216437.0	NM_001113412	75578.0	Mm.276098	NM_029347	ENSMUSG00000028573	Fggy	2310009E04Rik	FGGY carbohydrate kinase domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43832221-2	chr4	43832121	43832321	+	608.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	4296.0	NM_019475	100040268.0	Mm.317638	NM_019475	ENSMUSG00000111611	Olfr157	Mor262-12|Olfr37c|Or37c	olfactory receptor 157	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-68799192-3	chr7	68799118	68799318	+	889.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49980.0	NM_025549	66412.0	Mm.251199	NM_025549	ENSMUSG00000042659	Arrdc4	2410003C09Rik|AV216361	arrestin domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-22397768-2	chr8	22397668	22397868	+	585.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045473)	promoter-TSS (NR_045473)	509.0	NM_001358971	18408.0	Mm.200907	NM_181325	ENSMUSG00000031482	Slc25a15	D630044L02Rik|Ornt1	solute carrier family 25 (mitochondrial carrier ornithine transporter), member 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-122964525-4	chr3	122964436	122964636	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133857, intron 2 of 15)	intron (NM_133857, intron 2 of 15)	19911.0	NM_133857	99526.0	Mm.491248	NM_133857	ENSMUSG00000039701	Usp53	AA939927|Phxr3|Sp6|mKIAA1350|mbo	ubiquitin specific peptidase 53	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-102246290-6	chr15	102246185	102246385	+	984.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001042727, exon 1 of 8)	5' UTR (NM_001042727, exon 1 of 8)	215.0	NM_001042727	19411.0	Mm.1273	NM_011244	ENSMUSG00000001288	Rarg	Nr1b3|RAR-gamma|RARD|RARgamma2	retinoic acid receptor, gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24139909-1	chr17	24139809	24140009	+	545.0	f1_balb.idr	intron (NM_001286662, intron 1 of 13)	intron (NM_001286662, intron 1 of 13)	1685.0	NM_011062	18607.0	Mm.10504	NM_011062	ENSMUSG00000024122	Pdpk1	Pdk1	3-phosphoinositide dependent protein kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-87650715-4	chr1	87650661	87650861	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110192, intron 2 of 26)	intron (NM_001110192, intron 2 of 26)	30449.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-24965047-4	chr6	24964913	24965113	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CTG)n|Simple_repeat|Simple_repeat	-8888.0	NM_177013	319832.0	Mm.127446	NM_177013	ENSMUSG00000048022	Tmem229a	6332401O19Rik	transmembrane protein 229A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-47013721-2	chr6	47013621	47013821	+	740.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001004357, intron 16 of 23)	intron (NM_001004357, intron 16 of 23)	-230675.0	NM_025771	66797.0	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167241152-4	chr2	167241048	167241248	+	858.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008968)	promoter-TSS (NM_008968)	-611.0	NM_008968	19223.0	Mm.2339	NM_008968	ENSMUSG00000017969	Ptgis	Cyp8|Cyp8a1|Pgis	prostaglandin I2 (prostacyclin) synthase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-13741298-2	chr17	13741198	13741398	+	597.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_022311, intron 1 of 2)	intron (NM_022311, intron 1 of 2)	-19243.0	NR_151731	17356.0	Mm.59167	NM_010806	ENSMUSG00000068036	Afdn	5033403D15Rik|AF6|Af-6|Afadin|Gm314|I-afadin|Mllt4|S-afadin	afadin, adherens junction formation factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-37037645-3	chr8	37037557	37037757	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13419.0	NR_126063	414128.0	Mm.450976	NR_126063	ENSMUSG00000110242	G630064G18Rik	-	RIKEN cDNA G630064G18 gene	ncRNA	1.29443083577165	1.5851275428538	1.49859690657881	2.880914111678	4.74979568057457	5.32729780652832	4.58468262269602	4.93166221996767	4.62564879653802	0.000104395507292797	0.0031790286713172
Merged-chr7-91675578-2	chr7	91675478	91675678	+	653.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011807, intron 2 of 22)	intron (NM_011807, intron 2 of 22)	-386816.0	NM_001243046	23859.0	Mm.147213	NM_011807	ENSMUSG00000052572	Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|Gm21505|PSD93	discs large MAGUK scaffold protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-180922521-2	chr2	180922448	180922648	+	553.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1612.0	NM_173761	228994.0	Mm.30205	NM_173761	ENSMUSG00000038848	Ythdf1	2210410K23Rik|8030473O16	YTH domain family 1	protein-coding	-0.255677589424657	-0.240975690446996	-0.245786529116919	0.480142780171421	-0.104753434044791	0.27073612021323	-0.244725006027926	-0.248852635045006	-0.378152424883087	0.875234353877826	1
Merged-chr5-101824330-2	chr5	101824230	101824430	+	893.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_173370)	TTS (NM_173370)	59200.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-20743565-2	chr18	20743465	20743665	+	987.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019737, intron 1 of 8)	RSINE1|SINE|B4	2839.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-46521200-2	chr17	46521100	46521300	+	604.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081335, intron 21 of 40)	intron (NM_001081335, intron 21 of 40)	24411.0	NM_207161	381101.0	Mm.35801	NM_207161	ENSMUSG00000040658	Dnph1	C76683|Rcl	2'-deoxynucleoside 5'-phosphate N-hydrolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-83555804-4	chr9	83555716	83555916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172507, intron 1 of 3)	intron (NM_172507, intron 1 of 3)	7478.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-79181851-4	chr3	79181756	79181956	+	985.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31063.0	NR_045502	70924.0	Mm.444622	NR_045502	ENSMUSG00000104585	4921511C10Rik	-	RIKEN cDNA 4921511C10 gene	ncRNA	-0.591919460078799	-0.581610008036213	-0.412695872907373	-0.29213036055555	-0.59127908169338	-0.580844464055241	-0.0200374337465589	-0.587151492807145	0.540594336842267	0.840180515981274	1
Merged-chr5-144013910-3	chr5	144013807	144014007	+	892.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177682, intron 1 of 14)	intron (NM_177682, intron 1 of 14)	946.0	NM_177682	231874.0	Mm.320432	NM_177682	ENSMUSG00000029617	Ccz1	AU022870	CCZ1 vacuolar protein trafficking and biogenesis associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-29940629-4	chr6	29940509	29940709	+	980.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037740, intron 16 of 20)	intron (NM_001037740, intron 16 of 20)	23596.0	NM_001037740	320609.0	Mm.56097	NM_177204	ENSMUSG00000039629	Strip2	D330017J20Rik|Fam40b	striatin interacting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46876133-4	chr8	46876036	46876236	+	935.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-110751.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-93833939-2	chr10	93833804	93834004	+	898.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001206851, intron 1 of 6)	CpG	2349.0	NM_001206851	327799.0	Mm.491598	NM_183199	ENSMUSG00000020020	Usp44	E430004F17Rik	ubiquitin specific peptidase 44	protein-coding	0.712020464878011	1.14998578956766	0.782175048287363	0.474280237194124	1.00093918939257	0.486586933576989	0.789592194564926	0.475104508787113	-0.576330368735396	0.734464881710683	1
Merged-chr15-63625010-4	chr15	63624928	63625128	+	933.224976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-145420.0	NR_045279	432958.0	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-46298780-4	chr17	46298662	46298862	+	925.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286013, intron 2 of 5)	intron (NM_001286013, intron 2 of 5)	834.0	NM_001286013	106565.0	Mm.23633	NM_134120	ENSMUSG00000047428	Dlk2	AI413481|DLK-2|Egfl9	delta like non-canonical Notch ligand 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-121272087-4	chr6	121271910	121272110	+	898.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26104.0	NM_011909	24110.0	Mm.326911	NM_011909	ENSMUSG00000030107	Usp18	1110058H21Rik|AW047653|UBP43|Ubp15	ubiquitin specific peptidase 18	protein-coding	1.74711505973461	2.13010044853582	2.77760450654908	2.12639188248069	2.14188120876734	1.28348300416452	3.00840862599211	1.47234872268141	-0.148739664732959	0.881812057444527	0.998431161219273
Merged-chr7-46794919-2	chr7	46794819	46795019	+	669.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001005247, intron 1 of 22)	B1_Mus1|SINE|Alu	962.0	NM_001005248	246694.0	Mm.379442	NM_178742	ENSMUSG00000014418	Hps5	AI646796|AL022647|C85120|haze|hz|maroon|mr|ru-2|ru2	HPS5, biogenesis of lysosomal organelles complex 2 subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-60645316-2	chr13	60645216	60645416	+	818.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	MTD|LTR|ERVL-MaLR	43105.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	1.5197576797671	1.85900696441543	1.66283371782453	1.93642421570265	0.886802913985562	2.19453887970155	0.931150290485594	0.913271756793366	-1.09007617951948	0.406275181099525	0.891086832580755
Merged-chr9-120029623-3	chr9	120029518	120029718	+	858.7333369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6020.0	NM_011724	22437.0	Mm.10117	NM_011724	ENSMUSG00000079243	Xirp1	AI415219|Cmya1	xin actin-binding repeat containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-28547994-4	chr2	28547916	28548116	+	998.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145836, intron 11 of 17)	intron (NM_001145836, intron 11 of 17)	14552.0	NM_001145836	19730.0	Mm.5236	NM_009058	ENSMUSG00000026821	Ralgds	Gnds|Rgds|mKIAA1308	ral guanine nucleotide dissociation stimulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-129576377-2	chr7	129576277	129576477	+	768.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15486.0	NM_172255	207425.0	Mm.229323	NM_172255	ENSMUSG00000042055	Wdr11	2900055P10Rik|AW489876|Brwd2|mKIAA1351	WD repeat domain 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-80311155-4	chr18	80311037	80311237	+	914.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001190373, intron 3 of 3)	intron (NM_001190373, intron 3 of 3)	53117.0	NM_001190373	240444.0	Mm.279568	NM_001190373	ENSMUSG00000059852	Kcng2	AA591524	potassium voltage-gated channel, subfamily G, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-86667796-3	chr4	86667679	86667879	+	686.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007408, intron 3 of 7)	intron (NM_007408, intron 3 of 7)	2280.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-118768002-4	chr10	118767897	118768097	+	960.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	100906.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-140956919-1	chr4	140956819	140957019	+	656.0	f1_balb.idr	intron (NR_045911, intron 1 of 3)	intron (NR_045911, intron 1 of 3)	983.0	NR_045911	100126227.0	Mm.404073	NR_045911	ENSMUSG00000087698	Gm13031	-	predicted gene 13031	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-85123973-1	chr2	85123873	85124073	+	557.0	f1_balb.idr	Intergenic	Intergenic	-12387.0	NM_011784	23796.0	Mm.29368	NM_011784	ENSMUSG00000044338	Aplnr	APJ|Agtrl1|msr/apj	apelin receptor	protein-coding	-0.194490388239649	-0.175954392828862	0.549702380186364	0.682186472745776	-0.193320577825161	-0.174602096512098	-0.180647417939756	-0.185840527707914	-4.00150337085269	0.0956293889003859	1
Merged-chr9-45301315-2	chr9	45301215	45301415	+	969.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17785.0	NM_001013373	214531.0	Mm.394987	NM_001013373	ENSMUSG00000037129	Tmprss13	BC010843|Tpmrss13	transmembrane protease, serine 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-85735090-2	chr1	85734990	85735190	+	592.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177055, intron 1 of 5)	L1M5|LINE|L1	1516.0	NM_177055	319997.0	Mm.116691	NM_177055	ENSMUSG00000052760	A630001G21Rik	-	RIKEN cDNA A630001G21 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-117886947-4	chr4	117886850	117887050	+	998.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033617, intron 1 of 7)	CpG	379.0	NM_033617	114143.0	Mm.207052	NM_033617	ENSMUSG00000033379	Atp6v0b	2310024H13Rik|Atp6f|VMA16	ATPase, H+ transporting, lysosomal V0 subunit B	protein-coding	5.19858498509806	4.40267019181823	4.48456891420294	4.20280127587988	4.87422847733525	4.43358117136503	4.35237682214988	4.38718163841781	-0.13149408349526	0.739223831941329	0.998431161219273
Merged-chr7-24270409-4	chr7	24270294	24270494	+	929.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009567)	promoter-TSS (NM_009567)	-24.0	NM_009567	22755.0	Mm.383535	NM_009567	ENSMUSG00000055305	Zfp93	Znf235	zinc finger protein 93	protein-coding	0.195965701605114	-0.132110699159616	-0.136096469339543	-0.139153201582208	0.102600483026847	0.198447438039245	-0.135219693786424	0.253767388077269	1.47559000424704	0.511618588406839	1
Merged-chr3-84064652-4	chr3	84064577	84064777	+	701.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24516.0	NM_172681	229473.0	Mm.28838	NM_172681	ENSMUSG00000033767	Tmem131l	D930015E06Rik|Kiaa0922|mKIAA0922	transmembrane 131 like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-101905889-4	chr13	101905785	101905985	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-137668.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-184771200-1	chr1	184771100	184771300	+	656.0	f0_balb.idr	Intergenic	Intergenic	-38707.0	NM_008250	15284.0	Mm.1347	NM_008250	ENSMUSG00000039377	Hlx	Hlx1	H2.0-like homeobox	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-184441397-4	chr1	184441304	184441504	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	116287.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-102210364-4	chr7	102210345	102210545	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022979)	promoter-TSS (NM_022979)	110.0	NM_001291358	233575.0	Mm.302013	NM_145583	ENSMUSG00000030990	Pgap2	1810006G21Rik|C76649|Frag1	post-GPI attachment to proteins 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-41390655-2	chr7	41390555	41390755	+	706.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199330, intron 1 of 4)	MERV1_LTR|LTR|ERV1	2605.0	NM_183167	233168.0	Mm.379390	NM_183167	ENSMUSG00000056383	AI987944	-	expressed sequence AI987944	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-94226206-4	chr11	94226118	94226318	+	988.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14764.0	NM_009427	22057.0	Mm.259673	NM_009427	ENSMUSG00000037573	Tob1	Tob|Trob	transducer of ErbB-2.1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-108561070-3	chr9	108560977	108561177	+	838.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001114119)	TTS (NM_001114119)	576.0	NM_011830	23918.0	Mm.6065	NM_011830	ENSMUSG00000062867	Impdh2	IMPD	inosine monophosphate dehydrogenase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-3156354-4	chr17	3156257	3156457	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134123, intron 3 of 19)	intron (NM_134123, intron 3 of 19)	41385.0	NM_134123	106583.0	Mm.124373	NM_134123	ENSMUSG00000046201	Scaf8	A630086M08Rik|A930036P18Rik|AA408306|AI447644|AI448652|AU015035|Rbm16|mKIAA1116	SR-related CTD-associated factor 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-102003560-4	chr5	102003373	102003573	+	980.107178	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 3 of 66)	intron (NM_172882, intron 3 of 66)	66448.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0.999404812938311	0.538606071522854	0.864378911375419	1.07015484508549	0.514468233445816	1.05108406894438	0.532065345885994	1.07744137703528	-0.30042817121875	0.854824230705408	1
Merged-chr5-4962167-4	chr5	4962079	4962279	+	968.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011074, intron 10 of 14)	intron (NM_011074, intron 10 of 14)	-203963.0	NM_021457	14362.0	Mm.246003	NM_021457	ENSMUSG00000044674	Fzd1	AW227548|FZ-1|Fz1	frizzled class receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-20691202-3	chr11	20691082	20691282	+	906.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252503, intron 7 of 7)	intron (NM_001252503, intron 7 of 7)	50374.0	NM_001290545	216549.0	Mm.356580	NM_181411	ENSMUSG00000049659	Aftph	-	aftiphilin	protein-coding	3.59029389220132	3.37134191308391	2.83771017595862	2.97896647142067	3.66863024352381	3.19791850811886	1.97852515801208	3.55697508575325	0.0387684693533824	0.953320636148188	0.998431161219273
Merged-chr16-33899012-2	chr16	33898912	33899112	+	560.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 5 of 14)	intron (NM_001145884, intron 5 of 14)	68026.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-65336998-4	chr14	65336905	65337105	+	732.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21671.0	NM_199029	380912.0	Mm.270087	NM_199029	ENSMUSG00000034522	Zfp395	BC053701|Gm910	zinc finger protein 395	protein-coding	-0.635098120955102	-0.763235053770472	-0.45170609721958	-0.768407415138297	-0.771570756045107	-0.762574085160878	-0.318364255136726	-0.76801528345757	0.150069034244	0.95743679404726	1
Merged-chr16-36477122-4	chr16	36477038	36477238	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21746.0	NM_025288	20863.0	Mm.136573	NM_025288	ENSMUSG00000054905	Stfa3	Stf3	stefin A3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-29534503-2	chr6	29534403	29534603	+	673.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252382, intron 3 of 8)	intron (NM_001252382, intron 3 of 8)	5221.0	NM_001252382	27056.0	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-38950694-2	chr13	38950594	38950794	+	796.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001170430, intron 3 of 9)	L1M2|LINE|L1	9843.0	NM_001170430	108652.0	Mm.255506	NM_134060	ENSMUSG00000021432	Slc35b3	4921526O06Rik|AI428480|CGI-19|PABST2|PAPST2	solute carrier family 35, member B3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-50261765-4	chr6	50261700	50261900	+	999.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018769)	promoter-TSS (NM_018769)	-31.0	NM_018769	54722.0	Mm.248361	NM_018769	ENSMUSG00000029821	Gsdme	2310037D07Rik|4932441K13Rik|Dfna5|Dfna5h|EG14210|Fin15	gasdermin E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-9495802-1	chr18	9495702	9495902	+	626.0	f1_balb.idr	Intergenic	Intergenic	-45648.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	-1.29633872064033	-1.26720680975202	-1.27768629845203	-1.28629446248818	-0.70879630402184	-1.2649358608345	-1.2753139719142	-1.28475360524138	2.50884260628271	0.468217847016783	1
Merged-chr2-181536598-4	chr2	181536488	181536688	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271584, intron 2 of 5)	MYSERV6-int|LTR|ERVK	16103.0	NM_001271584	13002.0	Mm.140761	NM_016775	ENSMUSG00000000826	Dnajc5	2610314I24Rik|AU018536|Csp	DnaJ heat shock protein family (Hsp40) member C5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-18877912-5	chr11	18877900	18878100	+	812.724976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	140969.0	NM_001193271	17268.0	Mm.356578	NM_010789	ENSMUSG00000020160	Meis1	C530044H18Rik|Evi8	Meis homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30205590-3	chr7	30205486	30205686	+	705.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ETnERV-int|LTR|ERVK	-10433.0	NM_009795	12336.0	Mm.439782	NM_009795	ENSMUSG00000001794	Capns1	Capa-4|Capa4|Capn4|Cdps|Css1|D7Ertd146e	calpain, small subunit 1	protein-coding	0.933367724181863	0.233407000655888	0.226927334198726	0.221920215135489	0.789818498290453	0.234866154285328	0.410177585229726	0.656157161812671	0.513556584228008	0.793804526330619	1
Merged-chr9-96534091-2	chr9	96533991	96534191	+	724.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-55416.0	NM_001311135	19823.0	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-117658599-1	chr4	117658499	117658699	+	555.0	f1_balb.idr	intron (NM_001356405, intron 8 of 8)	intron (NM_001356405, intron 8 of 8)	23626.0	NM_023178	66233.0	Mm.29142	NM_023178	ENSMUSG00000009640	Dmap1	1500016M21Rik|DNMAP1|DNMTAP1|Dmtap1|mKIAA1425	DNA methyltransferase 1-associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-95494576-2	chr13	95494481	95494681	+	870.75	f0_c57.idr|f1_balb.idr	Intergenic	L1MC5|LINE|L1	-15926.0	NM_001081159	268686.0	Mm.291249	NM_001081159	ENSMUSG00000021679	S100z	Gm625	S100 calcium binding protein, zeta	protein-coding	-1.18818405238703	-1.1621273909064	-1.17340543805306	-1.18266956177369	-0.508992984534732	-1.15968339104222	-1.17085233538681	-1.18101128805699	2.76775479490304	0.421927342186551	1
Merged-chr6-136946441-4	chr6	136946343	136946543	+	924.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4544.0	NM_001301309	11857.0	Mm.2241	NM_007486	ENSMUSG00000030220	Arhgdib	D4|Gdid4|Ly-GDI	Rho, GDP dissociation inhibitor (GDI) beta	protein-coding	3.58547328745417	4.47889112759105	3.73907269882278	3.47118285977795	3.80138770702294	4.77037658668266	3.30625358171556	3.30273959410902	0.0894169664316908	0.869378747994818	0.998431161219273
Merged-chr8-104129964-3	chr8	104129870	104130070	+	669.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009868, intron 6 of 11)	MTE2a|LTR|ERVL-MaLR	-24097.0	NR_131138	546096.0	Mm.252264	NR_131138	ENSMUSG00000110053	Gm29682	Gm45664	predicted gene, 29682	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-77511628-3	chr14	77511522	77511722	+	937.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253759, intron 7 of 19)	Lx5c|LINE|L1	-4754.0	NR_033141	629678.0	Mm.390721	NM_001037935	ENSMUSG00000067973	Gm6994	EG629678	predicted gene 6994	ncRNA	2.5554238572776	3.75307675904324	2.78906846085119	2.38531247908904	2.00681518939682	2.57663836095071	1.2915475761778	1.25033823363432	-2.22018664643668	0.0159426456637506	0.151568829376925
Merged-chr1-151065637-2	chr1	151065537	151065737	+	790.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72202.0	NM_001024720	545370.0	Mm.379425	NM_001024720	ENSMUSG00000066842	Hmcn1	EG545370|FIBL-6|Gm201	hemicentin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-145829712-4	chr2	145829665	145829865	+	854.607178	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028724, intron 4 of 12)	intron (NM_028724, intron 4 of 12)	43649.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-68823464-2	chr7	68823364	68823564	+	822.1999509999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74226.0	NM_025549	66412.0	Mm.251199	NM_025549	ENSMUSG00000042659	Arrdc4	2410003C09Rik|AV216361	arrestin domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-121824317-4	chr5	121824221	121824421	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001306126, intron 3 of 8)	intron (NM_001306126, intron 3 of 8)	-5048.0	NR_105998	102465624.0		NR_105998	ENSMUSG00000099063	Mir7031	Gm27859|mmu-mir-7031	microRNA 7031	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-157129271-4	chr2	157129174	157129374	+	763.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001139520, intron 2 of 16)	intron (NM_001139520, intron 2 of 16)	5948.0	NM_001139520	56045.0	Mm.248478	NM_018851	ENSMUSG00000027639	Samhd1	E330031J07Rik|Mg11	SAM domain and HD domain, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-139042681-4	chr3	139042585	139042785	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356388, intron 2 of 13)	intron (NM_001356388, intron 2 of 13)	32516.0	NM_145544	229877.0	Mm.28893	NM_145544	ENSMUSG00000028149	Rap1gds1	BC011279|GDS1	RAP1, GTP-GDP dissociation stimulator 1	protein-coding	-1.06997269762433	-1.30473905204845	-1.3145270772132	-1.32256725251374	-1.06385251204029	-1.30261794616352	-1.3123112828633	-1.32112806497905	0.0394047164033882	0.991001358494878	1
Merged-chr10-74143843-2	chr10	74143743	74143943	+	953.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001142748, intron 3 of 25)	RLTR41C|LTR|ERV1	321976.0	NM_001142735	11994.0	Mm.338933	NM_023115	ENSMUSG00000052613	Pcdh15	BB078305|Gm9815|Ush1f|av|nmf19|roda	protocadherin 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-123332538-1	chr3	123332438	123332638	+	716.5	f0_balb.idr	intron (NM_027135, intron 10 of 22)	intron (NM_027135, intron 10 of 22)	53452.0	NM_201638	210529.0	Mm.260039	NM_201638	ENSMUSG00000028114	Mettl14	G430022H21Rik|mKIAA1627	methyltransferase like 14	protein-coding	0.526832913674987	0.756729760561991	0.399385278359507	0.556679347806042	0.386284242276144	0.764455110278367	0.97346972614074	0.929333562732848	1.3869694370311	0.406111723350783	1
Merged-chr17-56185122-2	chr17	56185022	56185222	+	855.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1202.0	NM_080837	28106.0	Mm.294870	NM_080837	ENSMUSG00000019579	Mydgf	D17Wsu104e|Il25|Ly6elg	myeloid derived growth factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111326252-3	chr12	111326154	111326354	+	703.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183016, intron 7 of 36)	intron (NM_183016, intron 7 of 36)	51464.0	NM_183016	217866.0	Mm.27397	NM_183016	ENSMUSG00000021279	Cdc42bpb	MRCKb	CDC42 binding protein kinase beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-122405250-2	chr7	122405150	122405350	+	826.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001316672, intron 2 of 16)	intron (NM_001316672, intron 2 of 16)	116125.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-116102068-4	chr9	116101971	116102171	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029575, intron 5 of 6)	intron (NM_029575, intron 5 of 6)	73292.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	5.98467353186444	5.4349567438322	5.63825716981216	6.21815913594204	6.36904263430194	6.29612708125024	5.82850949520193	6.5929978883544	0.483772563698615	0.0576690565729542	0.355313252702313
Merged-chr5-139355449-3	chr5	139355374	139355574	+	837.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160265, intron 4 of 8)	intron (NM_001160265, intron 4 of 8)	2857.0	NM_001160265	545817.0	Mm.482474	NM_001160265	ENSMUSG00000029541	Cyp2w1	Gm455	cytochrome P450, family 2, subfamily w, polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75451922-2	chr11	75451822	75452022	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_138950, exon 1 of 10)	exon (NM_138950, exon 1 of 10)	2795.0	NM_138950	192652.0	Mm.340378	NM_138950	ENSMUSG00000045374	Wdr81	BC054822|Gm883|mFLJ00182|nur5	WD repeat domain 81	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119967191-2	chr11	119967091	119967291	+	667.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037754, intron 3 of 13)	intron (NM_001037754, intron 3 of 13)	24099.0	NM_130862	108100.0	Mm.197534	NM_130862	ENSMUSG00000025372	Baiap2	IRSp53|R75030	brain-specific angiogenesis inhibitor 1-associated protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129592095-4	chr2	129591996	129592196	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291020)	promoter-TSS (NM_001291020)	-743.0	NM_001291020	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	6.18399687586393	5.83923996100919	5.45881224869982	5.95076017368063	5.52492320838985	5.65579036325586	5.23637909657678	5.19438121081684	-0.533346187614329	0.0486493147888127	0.320946377659187
Merged-chr11-4980384-3	chr11	4980316	4980516	+	998.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001243043, intron 1 of 22)	MLT1E3|LTR|ERVL-MaLR	-6408.0	NM_001355659	11764.0	Mm.274816	NM_007454	ENSMUSG00000009090	Ap1b1	Adtb1|b2b1660Clo	adaptor protein complex AP-1, beta 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-132606103-2	chr7	132606003	132606203	+	758.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4540.0	NM_029609	76429.0	Mm.276721	NM_029609	ENSMUSG00000030946	Lhpp	2310007H09Rik	phospholysine phosphohistidine inorganic pyrophosphate phosphatase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141954247-2	chr4	141954147	141954347	+	785.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177868, intron 11 of 31)	intron (NM_177868, intron 11 of 31)	-28745.0	NR_040672	545691.0	Mm.332015	NR_040672	ENSMUSG00000085424	Fhad1os1	Gm13037	forkhead-associated (FHA) phosphopeptide binding domain 1, opposite strand 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-69290131-3	chr18	69290034	69290234	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	-54358.0	NM_013685	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	1.61353467384641	1.88567105411227	2.62695126659428	2.68247736364779	3.15923898812795	4.87646364225669	3.80616465391546	3.75026001616875	2.84858350613812	4.55542259525453e-05	0.0016202359772094
Merged-chr14-20837865-2	chr14	20837765	20837965	+	660.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008873, exon 4 of 11)	exon (NM_008873, exon 4 of 11)	1203.0	NM_008873	18792.0	Mm.4183	NM_008873	ENSMUSG00000021822	Plau	u-PA|uPA	plasminogen activator, urokinase	protein-coding	-2.18292257394068	-2.15545247547656	-2.03304972317742	-2.17058342868585	-2.18099422382073	-2.1536522739386	-2.16187909550322	-2.16936197735154	-0.683654500252594	0.846597994014493	1
Merged-chr2-150910289-2	chr2	150910189	150910389	+	708.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027014, intron 1 of 6)	intron (NM_027014, intron 1 of 6)	695.0	NM_001163476	69270.0	Mm.271603	NM_027014	ENSMUSG00000027454	Gins1	2810418N01Rik|Gins4|PSF1|mKIAA0186	GINS complex subunit 1 (Psf1 homolog)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-33031403-4	chr4	33031308	33031508	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_036602)	promoter-TSS (NR_036602)	28.0	NM_001355494	56228.0	Mm.259095	NM_019586	ENSMUSG00000028277	Ube2j1	0710008M05Rik|1110030I22Rik|NCUBE-1|Ncube|Ncube1|Ubc6p	ubiquitin-conjugating enzyme E2J 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69340561-7	chr11	69340473	69340673	+	999.8095089999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027827)	promoter-TSS (NR_027827)	-196.0	NR_027827	80515.0	Mm.5324	NM_020591	ENSMUSG00000043419	Chd3os	2310043C11Rik|A030009H04Rik|AA589459|AB041807|MNCb-2875|RNF21	chromodomain helicase DNA binding protein 3, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171070972-1	chr1	171070872	171071072	+	543.0	f1_balb.idr	Intergenic	Intergenic	-6320.0	NR_106103	102466998.0		NR_106103	ENSMUSG00000099119	Mir6546	Gm27408|mmu-mir-6546	microRNA 6546	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-72934314-3	chr17	72934197	72934397	+	768.861084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029999, intron 2 of 2)	intron (NM_029999, intron 2 of 2)	15992.0	NM_029999	77889.0	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	0.749393522222136	2.06513970406742	0.802557652268961	1.03453297104063	2.13727263823466	0.832014629495903	1.07663755526073	2.46749664043429	1.40927554941615	0.303792651619748	0.805646834231461
Merged-chr7-52670255-2	chr7	52670155	52670355	+	586.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-654539.0	NM_001195601	100503036.0	Mm.279725	NM_001195601	ENSMUSG00000094445	1700015G11Rik	Ccdc179	RIKEN cDNA 1700015G11 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-59662452-4	chr11	59662370	59662570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_012027)	promoter-TSS (NM_012027)	-25.0	NM_201245	26936.0	Mm.2402	NM_012027	ENSMUSG00000005417	Mprip	9530046C02|AA536749|AI647711|C76423|Gm34094|RIP3|Rhoip3|mKIAA0864|p116Rip	myosin phosphatase Rho interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-79636192-4	chr2	79636097	79636297	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080558, intron 2 of 17)	CpG-8223	772.0	NM_080558	70599.0	Mm.272881	NM_080558	ENSMUSG00000027007	Ssfa2	5730488C15Rik|CS-1|CS1|KRAP|SPAG13|mKIAA1927	sperm specific antigen 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-118982028-1	chr10	118981928	118982128	+	547.0	f1_balb.idr	Intergenic	Intergenic	-54885.0	NR_110482	216377.0	Mm.208936	NR_110482	ENSMUSG00000112854	Gm38403	C230029M16	predicted gene, 38403	ncRNA	1.03340654517372	1.03568471913159	1.14586726060954	0.789027384066327	0.568485343915237	0.610314735300608	1.92856068066711	0.793245518431665	0.532838149962106	0.717816890936363	0.998431161219273
Merged-chr8-70792498-4	chr8	70792394	70792594	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199308)	promoter-TSS (NM_199308)	-61.0	NM_199308	546071.0	Mm.250731	NM_199308	ENSMUSG00000031833	Mast3	BC024265|mKIAA0561	microtubule associated serine/threonine kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90589573-4	chr2	90589456	90589656	+	975.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8909.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71359519-2	chr8	71359419	71359619	+	669.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_015742, intron 39 of 39)	intron (NM_015742, intron 39 of 39)	-7329.0	NM_001145780	67023.0	Mm.41890	NM_025917	ENSMUSG00000002395	Use1	2010315L10Rik|5730403H22Rik|AV002165|D12|Ed2|Q-snare|p31	unconventional SNARE in the ER 1 homolog (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-44930987-4	chr19	44930898	44931098	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081225)	promoter-TSS (NM_001081225)	-121.0	NM_172638	226151.0	Mm.212609	NM_172638	ENSMUSG00000036097	Slf2	3632432H19|Fam178a	SMC5-SMC6 complex localization factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-136355162-4	chr4	136355073	136355273	+	930.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43575.0	NM_001355182	74326.0	Mm.31051	NM_028871	ENSMUSG00000066037	Hnrnpr	2610003J05Rik|2610528B01Rik|Hnrpr	heterogeneous nuclear ribonucleoprotein R	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-106135983-2	chr8	106135883	106136083	+	556.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_040345, intron 1 of 3)	CpG	583.0	NR_040346	69771.0	Mm.393274	NR_040344		1810019D21Rik	-	RIKEN cDNA 1810019D21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-148579197-2	chr2	148579110	148579310	+	640.333374	f0_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-93405.0	NM_019761	56488.0	Mm.34663	NM_019761	ENSMUSG00000036992	Nxt1	1110001N02Rik	NTF2-related export protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-76710020-4	chr12	76709807	76710007	+	823.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013675, intron 1 of 35)	CpG	640.0	NM_013675	20741.0	Mm.32881	NM_013675	ENSMUSG00000021061	Sptb	AI842465|D330027P03Rik|Gm1301|Spnb-1|Spnb1|ja|jaundiced|mKIAA4219	spectrin beta, erythrocytic	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-8372092-3	chr17	8372050	8372250	+	852.044434	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161832)	promoter-TSS (NM_001161832)	-246.0	NM_001161832	21331.0	Mm.482744	NM_013682		T2	brachyury2	brachyury 2	protein-coding	-1.25043705834432	-1.22344025710165	-1.23393384777392	-1.24255359558995	-1.10155481940592	-1.22116625222791	-0.775165256172952	-1.24101066485209	2.4860994894339	0.452464134362524	1
Merged-chr16-44063330-4	chr16	44063197	44063397	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-21289.0	NM_001359085	207798.0	Mm.19316	NM_153528	ENSMUSG00000036292	Gramd1c	4921521N14Rik	GRAM domain containing 1C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101678884-2	chr11	101678784	101678984	+	971.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13343.0	NM_025404	80981.0	Mm.266840	NM_025404	ENSMUSG00000034936	Arl4d	1110036H21Rik|ARL6|AW456149|Arf4l|Arfl4|Arl5	ADP-ribosylation factor-like 4D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107708136-4	chr9	107707910	107708110	+	747.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011349, intron 1 of 17)	intron (NM_011349, intron 1 of 17)	-2419.0	NM_001311151	20350.0	Mm.12903	NM_011349	ENSMUSG00000034684	Sema3f	Sema4|Semak	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-98874399-4	chr13	98874297	98874497	+	998.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178716, intron 6 of 23)	intron (NM_178716, intron 6 of 23)	16645.0	NM_001048267	238799.0	Mm.173286	NM_178716	ENSMUSG00000009470	Tnpo1	AU021749|D13Ertd688e|IPO2|Kpnb2|MIP|MIP1|TRN	transportin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-34331114-1	chr10	34331014	34331214	+	830.0	f1_c57bl6.idr	intron (NM_001347463, intron 5 of 10)	L1_Mus3|LINE|L1	33693.0	NM_030203	72480.0	Mm.21485	NM_030203	ENSMUSG00000039485	Tspyl4	2610102M01Rik|B230210I21Rik|D10Bwg0791e	TSPY-like 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-101155254-4	chr4	101155156	101155356	+	965.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146145, intron 22 of 24)	intron (NM_146145, intron 22 of 24)	86218.0	NM_183024	242570.0	Mm.185636	NM_183024	ENSMUSG00000035275	Raver2	A430091O22Rik	ribonucleoprotein, PTB-binding 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-20032142-1	chr4	20032042	20032242	+	542.0	f1_c57bl6.idr	Intergenic	Intergenic	-9910.0	NM_010281	14590.0	Mm.20461	NM_010281	ENSMUSG00000073987	Ggh	gamma-GH	gamma-glutamyl hydrolase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-90209758-2	chr7	90209658	90209858	+	636.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_146194)	TTS (NM_146194)	55674.0	NM_029256	75338.0	Mm.487222	NM_029256	ENSMUSG00000030617	Ccdc83	4930549K11Rik|4930554C01Rik|4932423M01Rik	coiled-coil domain containing 83	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-8508530-4	chr6	8508412	8508612	+	893.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040452, exon 2 of 2)	non-coding (NR_040452, exon 2 of 2)	649.0	NR_040452	320312.0	Mm.374890	NR_040452	ENSMUSG00000087305	A430035B10Rik	2810488G03Rik	RIKEN cDNA A430035B10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-17232966-1	chr16	17232866	17233066	+	586.0	f0_balb.idr	promoter-TSS (NM_178922)	promoter-TSS (NM_178922)	-621.0	NM_178922	58180.0	Mm.261602	NM_178922	ENSMUSG00000050240	Hic2	AA409108|HRG22|mKIAA1020	hypermethylated in cancer 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65346113-4	chr9	65346005	65346205	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016688)	promoter-TSS (NM_016688)	37.0	NM_016688	50996.0	Mm.29193	NM_016688	ENSMUSG00000041837	Pdcd7	C80112|ES18	programmed cell death 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27588624-1	chr17	27588524	27588724	+	599.5	f1_c57bl6.idr	intron (NM_001291046, intron 2 of 4)	intron (NM_001291046, intron 2 of 4)	-22897.0	NM_001002895	106672.0	Mm.61488	NM_001002895	ENSMUSG00000062753	AI413582	AI854251|Smim29	expressed sequence AI413582	protein-coding	1.93955166102605	3.06358133057602	2.24053297086898	2.29231450024924	2.61945519534084	1.84817307164408	1.31618734141382	2.05626290461783	-0.89732171431805	0.339210752988426	0.840058063657189
Merged-chr1-191205984-2	chr1	191205884	191206084	+	891.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-18470.0	NR_151547	100504360.0	Mm.16927	NM_001033188		D730003I15Rik	AU020850	RIKEN cDNA D730003I15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124125066-2	chr5	124124966	124125166	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289472, intron 16 of 24)	intron (NM_001289472, intron 16 of 24)	8958.0	NM_144509	65105.0	Mm.29430	NM_144509	ENSMUSG00000029404	Arl6ip4	AA408210|AA408365|Aip-4|Srp25	ADP-ribosylation factor-like 6 interacting protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-24721470-2	chr6	24721370	24721570	+	863.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11775.0	NM_028920	74409.0	Mm.87331	NM_028920	ENSMUSG00000029679	Hyal6	4932701A20Rik|Hyal-ps1|Hyalp1	hyaluronoglucosaminidase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-88008865-3	chr6	88008745	88008945	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009005, intron 3 of 5)	intron (NM_009005, intron 3 of 5)	10950.0	NM_001293655	19349.0	Mm.333233	NM_009005	ENSMUSG00000079477	Rab7	Rab7a	RAB7, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171619874-4	chr1	171619777	171619977	+	838.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12467.0	NM_001277968	17085.0	Mm.560	NM_008534	ENSMUSG00000004707	Ly9	AI893573|CD229|Lgp100|Ly-9|SLAMF3|T100	lymphocyte antigen 9	protein-coding	1.64450315458281	1.59685782243998	1.00069068422521	2.01329997042885	1.65865788645138	1.74896932410453	1.00450180512223	1.50744901558417	-0.356131065999064	0.770245466831376	0.998431161219273
Merged-chr16-91694899-4	chr16	91694792	91694992	+	903.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026994, intron 8 of 11)	intron (NM_026994, intron 8 of 11)	5994.0	NR_040389	100038392.0	Mm.440384	NR_040389	ENSMUSG00000085169	Gm10785	-	predicted gene 10785	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-14554320-2	chr14	14554220	14554420	+	639.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MERV1_I-int|LTR|ERV1	-148705.0	NM_001360505	218756.0	Mm.258893	NM_001033270	ENSMUSG00000021733	Slc4a7	E430014N10Rik|NBC3|NBCn1|NBCn1-G|Tg(Thy1-SNCA)12Mjff	solute carrier family 4, sodium bicarbonate cotransporter, member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-87387237-4	chr17	87387131	87387331	+	943.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40510.0	NM_029298	75467.0	Mm.50108	NM_029298	ENSMUSG00000036557	Stpg4	1700011E24Rik|GSE	sperm tail PG rich repeat containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-65679470-4	chr18	65679281	65679481	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361052, intron 6 of 8)	Tigger7|DNA|TcMar-Tigger	-18887.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	2.25358457989002	2.52545814071578	2.44101077249351	1.90132970383334	1.82576657793329	2.54399105638496	1.96675674067115	1.74986411068722	-0.597280749346574	0.500240589235008	0.938059363548374
Merged-chr12-85094171-3	chr12	85094067	85094267	+	924.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001361239, exon 1 of 5)	exon (NM_001361239, exon 1 of 5)	1448.0	NM_001361239	73422.0	Mm.311944	NM_175198	ENSMUSG00000042320	Prox2	1700058C01Rik	prospero homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-62815502-2	chr9	62815402	62815602	+	809.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3854.0	NM_010193	14155.0	Mm.24069	NM_010193	ENSMUSG00000032244	Fem1b	mKIAA0396	feminization 1 homolog b (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-28054223-1	chr1	28054123	28054323	+	576.0	f1_c57bl6.idr	Intergenic	Intergenic	170177.0	NR_151583	433281.0	Mm.329306	NR_151583	ENSMUSG00000101514	Gm5524	AI875557|EG433281	predicted gene 5524	ncRNA	2.14269481414067	1.79843575908035	2.56205269559882	1.67454876535599	0.90268509763917	0.979807271039658	1.59441651363175	0.934492042899436	-3.27502833058125	0.0112105578454672	0.117946261135108
Merged-chr4-48196549-4	chr4	48196451	48196651	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355184, intron 10 of 10)	intron (NM_001355184, intron 10 of 10)	16664.0	NR_035484	100316708.0		NR_035484	ENSMUSG00000087844	Mir1958	mmu-mir-1958	microRNA 1958	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-163919114-4	chr2	163919063	163919263	+	908.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183023)	promoter-TSS (NM_183023)	-480.0	NM_183023	241770.0	Mm.330760	NM_183023	ENSMUSG00000035226	Rims4	6530406L02|Rim4	regulating synaptic membrane exocytosis 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-142098006-4	chr4	142097898	142098098	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13694.0	NM_145402	214359.0	Mm.27587	NM_145402	ENSMUSG00000040616	Tmem51	BC003277	transmembrane protein 51	protein-coding	1.62756099994717	1.82036470974144	3.01546634976451	2.65316796906933	2.17814979767089	1.60852596848563	2.57753246216156	1.72076220511717	-0.743346722114558	0.428493179351239	0.903416445927044
Merged-chr3-41374791-3	chr3	41374684	41374884	+	867.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	118415.0	NR_040385	78706.0	Mm.366094	NR_040385	ENSMUSG00000097639	Platr4	C430002E04Rik	pluripotency associated transcript 4	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-10702984-4	chr17	10702888	10703088	+	993.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027032, intron 2 of 4)	intron (NM_027032, intron 2 of 4)	137203.0	NM_027032	69310.0	Mm.18889	NM_027032	ENSMUSG00000037196	Pacrg	1700008H23Rik	PARK2 co-regulated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-98031386-4	chr3	98031329	98031529	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010928, intron 1 of 33)	intron (NM_010928, intron 1 of 33)	17891.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-85260273-1	chr1	85260173	85260373	+	1000.0	f1_balb.idr	intron (NM_175219, intron 2 of 7)	intron (NM_175219, intron 2 of 7)	10293.0	NM_175219	620078.0	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik	RIKEN cDNA C130026I21 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-116674410-1	chr6	116674310	116674510	+	1000.0	f0_c57.idr	promoter-TSS (NM_178045)	promoter-TSS (NM_178045)	-574.0	NM_178045	213391.0	Mm.257931	NM_178045	ENSMUSG00000042129	Rassf4	3830411C14Rik|AD037|AI586137	Ras association (RalGDS/AF-6) domain family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-34250245-2	chr10	34250145	34250345	+	641.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	-31945.0	NM_009433	22110.0	Mm.20445	NM_009433	ENSMUSG00000047514	Tspyl1	Tspyl	testis-specific protein, Y-encoded-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-76375029-2	chr18	76374929	76375129	+	786.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	112584.0	NM_001311070	17126.0	Mm.152699	NM_010754	ENSMUSG00000024563	Smad2	7120426M23Rik|Madh2|Madr2|Smad-2|mMad2	SMAD family member 2	protein-coding	0.231390731902279	-0.324755796345003	-0.329279213651756	-0.332771531133395	0.400814600331444	-0.323736610980942	-0.328281249439018	-0.332161276773038	0.516560227980419	0.845171765192404	1
Merged-chr15-39197381-2	chr15	39197281	39197481	+	701.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001256382)	promoter-TSS (NM_001256382)	-905.0	NM_001256382	116838.0	Mm.309296	NM_053271	ENSMUSG00000037386	Rims2	2810036I15Rik|AW048769|RIM2|Rab3ip2|Rim2(+40A)|Rim2(+44A)|Rim2(+4A)|Serg2|Syt3-rs|mKIAA0751	regulating synaptic membrane exocytosis 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-34874642-4	chr6	34874516	34874716	+	995.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001347101, exon 4 of 4)	exon (NM_001347101, exon 4 of 4)	3449.0	NM_199145	78412.0	Mm.248440	NM_199145	ENSMUSG00000046806	3110062M04Rik	AL023049|Cyren|Mri	RIKEN cDNA 3110062M04 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-44731205-4	chr13	44731112	44731312	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360281)	promoter-TSS (NM_001360281)	-59.0	NM_001360281	16468.0	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27083809-3	chr17	27083706	27083906	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080553, intron 3 of 57)	intron (NM_080553, intron 3 of 57)	-7439.0	NR_106142	102465779.0		NR_106142	ENSMUSG00000098826	Mir7677	Gm27400|mmu-mir-7677	microRNA 7677	ncRNA	3.09357326917648	3.40087257678346	2.61226356501977	1.89663834443134	4.373119878824	5.00216523132805	3.74651403902828	3.70118335677849	2.12319635781209	0.000376272482653701	0.00883532109897565
Merged-chr14-15084002-2	chr14	15083902	15084102	+	580.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	263187.0	NM_001195229	674895.0	Mm.317563	NM_001034865	ENSMUSG00000042567	Nek10	Gm282	NIMA (never in mitosis gene a)- related kinase 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-59667947-4	chr13	59667852	59668052	+	660.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001035122, intron 1 of 9)	MTD|LTR|ERVL-MaLR	7832.0	NM_001035122	105348.0	Mm.171335	NM_027307	ENSMUSG00000021556	Golm1	2310001L02Rik|AW125446|D030064E01Rik|GP73|Golph2|PSEC0257	golgi membrane protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101246999-3	chr15	101246908	101247108	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19838.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	3.08960250674217	3.46011985909799	1.54698459666999	3.61390870579819	3.04464752272744	2.52389190367124	2.43609503071071	2.74562021252148	-0.74984210722073	0.330645455286978	0.83197671091297
Merged-chr12-110992336-4	chr12	110992251	110992451	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2047.0	NR_036598	77878.0	Mm.293198	NR_036598	ENSMUSG00000113056	6030440G07Rik	-	RIKEN cDNA 6030440G07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-87746036-2	chr11	87745936	87746136	+	702.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8485.0	NM_009296	20922.0	Mm.622	NM_009296	ENSMUSG00000020485	Supt4a	AL022777|Supt4h|Supt4h1|Supt4h1a	suppressor of Ty 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-43310626-3	chr7	43310516	43310716	+	969.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027264, intron 2 of 4)	intron (NM_027264, intron 2 of 4)	2684.0	NM_001357812	69930.0	Mm.45367	NM_027264	ENSMUSG00000012640	Zfp715	2610041B18Rik|mszf15	zinc finger protein 715	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-79887163-3	chr7	79887075	79887275	+	681.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009682, intron 4 of 5)	L1M7|LINE|L1	33465.0	NM_009682	11778.0	Mm.220173	NM_009682	ENSMUSG00000063801	Ap3s2	[s]3B	adaptor-related protein complex 3, sigma 2 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-43564344-2	chr13	43564244	43564444	+	793.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Zaphod|DNA|hAT-Tip100	-4153.0	NM_001081059	76137.0	Mm.426290	NM_001081059	ENSMUSG00000021371	Mcur1	6230416A05Rik|AU015498|AV136929|AW554392|C88263|Ccdc90a	mitochondrial calcium uniporter regulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-132035403-4	chr3	132035370	132035570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49822.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	2.11838671967508	1.9435991281063	2.21384945156925	1.1271107511837	1.85722508795043	1.80854137148274	2.2320905188805	1.1304300955384	-0.27413286270401	0.806741190460172	0.998431161219273
Merged-chr11-110997481-5	chr11	110997477	110997677	+	930.2666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252209)	promoter-TSS (NM_001252209)	90.0	NM_001252209	16517.0	Mm.30176	NM_010604	ENSMUSG00000051497	Kcnj16	6430410F18Rik|AI132396|Kir5.1	potassium inwardly-rectifying channel, subfamily J, member 16	protein-coding	4.46035959499441	2.71149625749954	4.20078104105227	4.29792863678328	3.91547297624847	3.22830324660503	4.49302763898193	4.92467516091237	0.281403847382002	0.600748739387451	0.972964840983327
Merged-chr4-126131499-2	chr4	126131399	126131599	+	803.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028800, intron 6 of 10)	intron (NM_028800, intron 6 of 10)	-16504.0	NM_172145	230752.0	Mm.41569	NM_172145	ENSMUSG00000050212	Eva1b	2610027C15Rik|Fam176b	eva-1 homolog B (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-102456114-2	chr15	102456014	102456214	+	969.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3056.0	NM_001170911	66151.0	Mm.393955	NM_025385	ENSMUSG00000023048	Prr13	1110020C13Rik|2010324E22Rik	proline rich 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-41490406-4	chr10	41490308	41490508	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009213)	promoter-TSS (NM_009213)	-31.0	NM_028430	73075.0	Mm.359762	NM_028430	ENSMUSG00000078451	Ppil6	2900084F20Rik	peptidylprolyl isomerase (cyclophilin)-like 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-3284249-3	chr8	3284149	3284349	+	813.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4632.0	NM_001330056	16337.0	Mm.268003	NM_010568	ENSMUSG00000005534	Insr	4932439J01Rik|CD220|D630014A15Rik|IR|IR-A|IR-B	insulin receptor	protein-coding	-1.8429182434137	-1.8129848525291	-1.82203695700074	-1.54461076807193	-1.84081697472045	-1.81102322372834	-1.81998775896484	-1.82814164409203	-1.43114970378833	0.684630132144154	1
Merged-chr14-55562099-2	chr14	55561999	55562199	+	833.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199009, intron 2 of 14)	MTE2b|LTR|ERVL-MaLR	1176.0	NM_001199009	28199.0	Mm.11535	NM_133734	ENSMUSG00000022214	Dcaf11	0710008A13Rik|C76035|D14Ucla1|Dacf11|GLO14|Wdr23	DDB1 and CUL4 associated factor 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-87807932-2	chr6	87807832	87808032	+	544.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_104478, intron 1 of 2)	intron (NR_104478, intron 1 of 2)	1825.0	NM_133717	69834.0	Mm.37380	NM_133717	ENSMUSG00000030055	Rab43	1810048P08Rik|2500004H21Rik|AW490415	RAB43, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129558745-4	chr2	129558666	129558866	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-22164.0	NM_177653	228592.0	Mm.452175	NM_177653	ENSMUSG00000043727	F830045P16Rik	Sirpb3	RIKEN cDNA F830045P16 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-13463456-1	chr6	13463356	13463556	+	610.0	f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	50119.0	NR_038149	69413.0	Mm.177847	NR_038149	ENSMUSG00000101894	1700016P04Rik	-	RIKEN cDNA 1700016P04 gene	ncRNA	1.54529945997835	2.2470654416483	3.35486706781812	0.945487930587909	0.901163527838924	1.01906458830841	2.40478254362499	1.82482296125736	-1.42870596560717	0.233843907113771	0.729500571386123
Merged-chr3-82030547-3	chr3	82030462	82030662	+	771.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33640.0	NM_021370	58170.0	Mm.88839	NM_021370	ENSMUSG00000028008	Asic5	Accn5|Blinac|Inac	acid-sensing (proton-gated) ion channel family member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-40525170-2	chr10	40525070	40525270	+	895.8333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45192.0	NM_027572	70840.0	Mm.332570	NM_027572	ENSMUSG00000019834	Slc22a16	4921504E14Rik|CT2|FLIPT2|OCT6|OKB1	solute carrier family 22 (organic cation transporter), member 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-122633322-6	chr14	122633210	122633410	+	966.2777710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153443, intron 7 of 24)	intron (NR_153443, intron 7 of 24)	98982.0	NM_144844	110821.0	Mm.23876	NM_144844	ENSMUSG00000041650	Pcca	C79630	propionyl-Coenzyme A carboxylase, alpha polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171409836-2	chr1	171409736	171409936	+	708.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001005508, exon 12 of 12)	3' UTR (NM_001005508, exon 12 of 12)	-1477.0	NM_001305678	22278.0	Mm.8	NM_009480	ENSMUSG00000026641	Usf1	bHLHb11	upstream transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-93796070-2	chr16	93795970	93796170	+	763.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027293, intron 27 of 36)	intron (NM_027293, intron 27 of 36)	-1169.0	NR_151466	102633000.0	Mm.443436	NR_151466		2310043M15Rik	-	RIKEN cDNA 2310043M15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-110844264-2	chr12	110844164	110844364	+	829.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_152102)	TTS (NR_152102)	3235.0	NR_152102	66709.0	Mm.390504	NR_152102		4921507G05Rik	-	RIKEN cDNA 4921507G05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-116945124-1	chr2	116945024	116945224	+	542.0	f1_balb.idr	Intergenic	Intergenic	44972.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	0.894908656182662	0.418066286032649	0.409747639392486	0.966834334759102	0.801922575152748	0.419933893536021	0.411587183660958	1.25192028492866	0.395029816919155	0.826771509708113	1
Merged-chr15-95850744-4	chr15	95850629	95850829	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253813, intron 2 of 20)	L1MB3|LINE|L1	-20657.0	NR_155276	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-108050221-2	chr3	108050108	108050308	+	589.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	-5349.0	NM_001160411	14865.0	Mm.31203	NM_026764	ENSMUSG00000027890	Gstm4	1110004G14Rik|GSTM7-7|Gstb-4|Gstb4	glutathione S-transferase, mu 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-12433932-3	chr19	12433867	12434067	+	849.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	6062.0	NM_019540	56093.0	Mm.285849	NM_019540	ENSMUSG00000040065	Pfpl	Epcs5|Epcs50	pore forming protein-like	protein-coding	3.18302226146833	2.89049468386551	2.90942469682767	2.71104089987241	3.06299165712765	3.95735241894433	3.04044753230635	2.45372414520253	0.525282404745803	0.426925212963138	0.902392427013133
Merged-chr9-99450457-2	chr9	99450357	99450557	+	910.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-5786.0	NM_001165957	623534.0	Mm.484967	NM_001165957		Nme9	Txndc6	NME/NM23 family member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-46395676-2	chr3	46395576	46395776	+	782.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	52265.0	NM_001101479	241989.0	Mm.119234	NM_001101479	ENSMUSG00000090919	Pabpc4l	C330050A14Rik|EG241989	poly(A) binding protein, cytoplasmic 4-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-57454057-2	chr16	57453957	57454157	+	652.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	-95185.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32570437-2	chr2	32570337	32570537	+	569.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010073)	promoter-TSS (NM_010073)	-421.0	NM_010073	13481.0	Mm.22001	NM_010073	ENSMUSG00000026810	Dpm2	AW557993|R75484	dolichol-phosphate (beta-D) mannosyltransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70597562-3	chr11	70597468	70597668	+	678.966675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016713, intron 2 of 30)	intron (NM_016713, intron 2 of 30)	-18326.0	NM_001145537	668433.0	Mm.425687	NM_001145537	ENSMUSG00000087279	4930544D05Rik	-	RIKEN cDNA 4930544D05 gene	protein-coding	-0.748032476918741	-0.735197735925268	0.187563639742544	-0.742615962590057	-0.58133669493442	-0.734259828667876	-0.738451250963583	-0.742048581598334	-2.58185511521995	0.360286018503004	1
Merged-chr15-41778868-1	chr15	41778768	41778968	+	665.0	f0_balb.idr	intron (NR_152565, intron 3 of 17)	intron (NR_152565, intron 3 of 17)	-10127.0	NM_001358976	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-17027021-4	chr7	17026923	17027123	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011155, intron 1 of 12)	L2b|LINE|L2	891.0	NM_011155	19060.0	Mm.3294	NM_011155	ENSMUSG00000003099	Ppp5c	AU020526|PP5	protein phosphatase 5, catalytic subunit	protein-coding	4.45055082834967	3.55626259838811	4.41746212967805	5.18929595798921	4.22119428230212	4.5927083493359	4.45002404492386	4.91079832409275	0.0412251379109676	0.923310118061481	0.998431161219273
Merged-chr18-31766922-4	chr18	31766813	31767013	+	605.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153515, intron 2 of 7)	intron (NM_153515, intron 2 of 7)	6297.0	NM_001242430	225339.0	Mm.290804	NM_153515	ENSMUSG00000041915	Ammecr1l	5430429D03Rik|AU022236|AU040755|AW111353|E230022H04Rik	AMME chromosomal region gene 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-91224662-4	chr13	91224589	91224789	+	986.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025770)	promoter-TSS (NM_025770)	-702.0	NM_025770	66795.0	Mm.235385	NM_025770	ENSMUSG00000021619	Atg10	5330424L23Rik|5430428K15Rik|AI852123|APG10|Agp10|Apg10l|Apg10p|Atg10l	autophagy related 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-16047175-4	chr19	16047049	16047249	+	906.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	62074.0	NR_045355	100502653.0	Mm.149980	NR_045355	ENSMUSG00000097557	C130060C02Rik	-	RIKEN cDNA C130060C02 gene	ncRNA	2.59264006564408	1.82261935923948	2.23230852599057	1.50997979010829	2.28344592390786	3.01367058959552	1.29763946292346	2.50101202887569	0.672765393950719	0.48850970631809	0.933453007555711
Merged-chr4-150120539-2	chr4	150120439	150120639	+	750.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_019741, intron 2 of 13)	intron (NM_019741, intron 2 of 13)	1195.0	NM_019741	56485.0	Mm.260220	NM_019741	ENSMUSG00000028976	Slc2a5	AI526984|Glut5|Slc5a	solute carrier family 2 (facilitated glucose transporter), member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-34675156-2	chr14	34675056	34675256	+	902.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001004436, intron 1 of 18)	intron (NM_001004436, intron 1 of 18)	1228.0	NM_001301330	218914.0	Mm.27957	NM_001004436	ENSMUSG00000041408	Wapl	A530089A20Rik|BC037674|DIF-2|FOE|Wapal	WAPL cohesin release factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-21070242-4	chr1	21070146	21070346	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177409, intron 1 of 10)	intron (NM_177409, intron 1 of 10)	8979.0	NM_177409	170829.0	Mm.185680	NM_177409	ENSMUSG00000041779	Tram2	C330003D03Rik	translocating chain-associating membrane protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167823593-4	chr2	167823465	167823665	+	795.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-108762.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-74508818-4	chr17	74508712	74508912	+	734.354187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	19319.0	NM_026417	67864.0	Mm.41891	NM_026417	ENSMUSG00000024072	Yipf4	2310034L04Rik	Yip1 domain family, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-110953405-4	chr13	110953242	110953442	+	793.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-49496.0	NR_131194	102636142.0	Mm.417611	NR_131194		4930526H09Rik	-	RIKEN cDNA 4930526H09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-136219111-2	chr5	136219011	136219211	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001302938, exon 9 of 9)	exon (NM_001302938, exon 9 of 9)	-20157.0	NM_025774	66801.0	Mm.425295	NM_025774	ENSMUSG00000039737	Prkrip1	8430424D23Rik|C114	Prkr interacting protein 1 (IL11 inducible)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117145010-2	chr11	117144910	117145110	+	630.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166507, intron 7 of 16)	intron (NM_001166507, intron 7 of 16)	29838.0	NM_001166506	74136.0	Mm.272312	NM_028777	ENSMUSG00000020823	Sec14l1	1200017E04Rik|2810012L19Rik|Naa-35	SEC14-like lipid binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-82784801-4	chr18	82784645	82784845	+	799.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25706.0	NR_045389	76961.0	Mm.396392	NR_045389	ENSMUSG00000101773	2210420H20Rik	-	RIKEN cDNA 2210420H20 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-27647936-3	chr15	27647842	27648042	+	929.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TTTTTG)n|Simple_repeat|Simple_repeat	-17249.0	NM_001013792	432940.0	Mm.309164	NM_001013792	ENSMUSG00000046034	Otulin	C79097|Fam105b|m3Sapc|m7-1Sapc	OTU deubiquitinase with linear linkage specificity	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-124426460-2	chr9	124426360	124426560	+	618.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	2673.0	NR_015516	75135.0	Mm.476814	NR_015516		4930526I15Rik	1600027J15Rik	RIKEN cDNA 4930526I15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55741909-2	chr14	55741809	55742009	+	843.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026819, intron 4 of 8)	Lx8|LINE|L1	3775.0	NM_026819	52585.0	Mm.21623	NM_026819	ENSMUSG00000002332	Dhrs1	1110029G07Rik|AW112170|D14Ertd484e	dehydrogenase/reductase (SDR family) member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-121740305-4	chr10	121740155	121740355	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359720, intron 1 of 2)	intron (NM_001359720, intron 1 of 2)	325.0	NM_173022	270802.0	Mm.209172	NM_173022	ENSMUSG00000053684	BC048403	E030027L10	cDNA sequence BC048403	protein-coding	1.77111931992653	2.24562051546971	2.47597595204939	2.407008572395	2.12639544516385	1.60418482286495	1.91996817427733	2.0019998929128	-0.842370448433204	0.355142442139759	0.853659667510465
Merged-chr3-135441789-2	chr3	135441689	135441889	+	644.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356598, intron 2 of 8)	intron (NM_001356598, intron 2 of 8)	2663.0	NM_001356597	66105.0	Mm.49884	NM_025356	ENSMUSG00000078578	Ube2d3	1100001F19Rik|9430029A22Rik|AA414951	ubiquitin-conjugating enzyme E2D 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139351049-2	chr5	139350949	139351149	+	565.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1568.0	NM_001160265	545817.0	Mm.482474	NM_001160265	ENSMUSG00000029541	Cyp2w1	Gm455	cytochrome P450, family 2, subfamily w, polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3451393-3	chr19	3451278	3451478	+	776.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36834.0	NM_010253	14419.0	Mm.4655	NM_010253	ENSMUSG00000024907	Gal	Galn	galanin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-82973767-3	chr10	82973668	82973868	+	885.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	-11729.0	NM_021439	58250.0	Mm.360747	NM_021439	ENSMUSG00000034612	Chst11	1110020P09Rik|C4ST|C4ST-1|C4ST1|C4s	carbohydrate sulfotransferase 11	protein-coding	0.167489536113314	0.185084572461986	0.179310971797916	0.334389566639876	0.31048760400146	0.67356922406382	0.743249262615292	0.594563085596397	3.28544452615876	0.0852506910902782	1
Merged-chr8-70489695-2	chr8	70489595	70489795	+	946.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2337.0	NM_182991	67937.0	Mm.23002	NM_182991	ENSMUSG00000035964	Tmem59l	5330410G16Rik	transmembrane protein 59-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64619993-4	chr5	64619893	64620093	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-9294.0	NR_045078	100042198.0	Mm.25191	NR_045078	ENSMUSG00000105402	Gm3716	Gm1683	predicted gene 3716	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36019914-2	chr18	36019814	36020014	+	673.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001167891, intron 9 of 9)	intron (NM_001167891, intron 9 of 9)	55084.0	NR_110349	74002.0	Mm.196944	NM_028707	ENSMUSG00000024347	Psd2	6330404E20Rik|AW125584|EFA6C	pleckstrin and Sec7 domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-40137108-2	chr12	40137008	40137208	+	542.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-2880.0	NM_001146196	20259.0	Mm.2416	NM_009132	ENSMUSG00000002565	Scin	AW545522|adseverin	scinderin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-149756623-4	chr4	149756563	149756763	+	782.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027460, intron 2 of 6)	B1_Mm|SINE|Alu	17604.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-122247344-3	chr3	122247230	122247430	+	926.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008129, intron 1 of 6)	intron (NM_008129, intron 1 of 6)	1773.0	NM_008129	14630.0	Mm.292676	NM_008129	ENSMUSG00000028124	Gclm	AI649393|Gcmc|Glclr	glutamate-cysteine ligase, modifier subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-37317312-4	chr1	37317221	37317421	+	810.270813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030266, intron 1 of 25)	intron (NM_030266, intron 1 of 25)	17483.0	NM_001290797	269180.0	Mm.5294	NM_030266	ENSMUSG00000026113	Inpp4a	107kDa|9630012D15|D130048C09Rik|R74740	inositol polyphosphate-4-phosphatase, type I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-122690894-4	chr10	122690796	122690996	+	942.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110218, intron 1 of 9)	intron (NM_001110218, intron 1 of 9)	11581.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	2.85931413805552	2.49193882633739	2.68561051495237	2.16231087379491	3.18115049203167	1.5803287503972	3.84822106475098	3.52757601898228	1.21075438557338	0.117190582629124	0.536797891467635
Merged-chr11-70562908-4	chr11	70562823	70563023	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001045959)	promoter-TSS (NM_001045959)	42.0	NM_016713	50932.0	Mm.42967	NM_016713	ENSMUSG00000020827	Mink1	B55|MINK|Map4k6|Ysk2	misshapen-like kinase 1 (zebrafish)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-193273237-2	chr1	193273123	193273323	+	632.0	f0_balb.idr|f1_balb.idr	promoter-TSS (NM_008059)	promoter-TSS (NM_008059)	-35.0	NM_008059	14373.0	Mm.439721	NM_008059	ENSMUSG00000009633	G0s2	AI255151|AV006465	G0/G1 switch gene 2	protein-coding	-0.572124512537795	-0.561528989217504	-0.0079284765108697	-0.567690114090792	-0.428821559117453	-0.206772947763406	-0.56424370021194	-0.567222477090201	-0.379844911450645	0.886525013664803	1
Merged-chr9-35588327-2	chr9	35588227	35588427	+	759.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18258.0	NM_029762	76832.0	Mm.482285	NM_029762	ENSMUSG00000050555	Hyls1	3010015K02Rik	HYLS1, centriolar and ciliogenesis associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-28591669-4	chr2	28591575	28591775	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME4b|LINE|L1	-8396.0	NM_001290484	70239.0	Mm.274120	NM_148928	ENSMUSG00000026816	Gtf3c5	2700084A09Rik|TFIIIC63|TFiiiC2-63	general transcription factor IIIC, polypeptide 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80071836-2	chr10	80071736	80071936	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359635, intron 5 of 31)	intron (NM_001359635, intron 5 of 31)	3603.0	NM_001359636	216161.0	Mm.262102	NM_183426	ENSMUSG00000035673	Sbno2	BC019206|F730040C21|Sno|Stno	strawberry notch 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65549323-3	chr9	65549221	65549421	+	864.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30766.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	1.46061646608435	1.98460849668738	1.118993319664	1.09597548288455	1.89129746183187	2.00040180366533	2.6415857791154	2.62583074993415	2.41518632546221	0.025003249041058	0.209392030242867
Merged-chr9-107554579-4	chr9	107554481	107554681	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019713)	promoter-TSS (NM_019713)	-2.0	NM_019713	56289.0	Mm.12091	NM_019713	ENSMUSG00000010067	Rassf1	123F2|AA536941|AU044980|NORE2A|RDA32|REH3P21|Rassf1A|Rassf1B|Rassf1C	Ras association (RalGDS/AF-6) domain family member 1	protein-coding	7.15121659119884	7.04324626629287	6.62710479186051	6.90384321927088	6.75692607788644	7.00834469767631	6.63797704305864	7.14893423661861	-0.0484513112837098	0.798315553355484	0.998431161219273
Merged-chr7-102257700-2	chr7	102257600	102257800	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-7582.0	NM_019566	56212.0	Mm.259795	NM_019566	ENSMUSG00000073982	Rhog	2810426G09Rik|Arhg|Sid10750	ras homolog family member G	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-143132077-4	chr6	143131966	143132166	+	836.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153819, intron 7 of 8)	L2|LINE|L2	21865.0	NR_153819	102633311.0	Mm.333484	NR_153819		Gm31108	Gm31169	predicted gene, 31108	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-87120908-2	chr6	87120808	87121008	+	544.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	16162.0	NM_001167937	52372.0	Mm.282851	NM_001167937	ENSMUSG00000090891	D6Ertd527e	AU043841	DNA segment, Chr 6, ERATO Doi 527, expressed	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-144890788-4	chr4	144890676	144890876	+	977.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2051.0	NM_001172424	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4863089-4	chr16	4863008	4863208	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_030192, exon 12 of 16)	exon (NM_030192, exon 12 of 16)	16743.0	NM_145359	207740.0	Mm.268895	NM_145359	ENSMUSG00000039568	Ubald1	1500031H01Rik|BC013706|Fam100a	UBA-like domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-58568525-4	chr18	58568459	58568659	+	965.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081072, intron 1 of 9)	intron (NM_001081072, intron 1 of 9)	12319.0	NM_001081072	225579.0	Mm.258517	NM_001081072	ENSMUSG00000024600	Slc27a6	4732438L20Rik|FACVL2|FATP6|VLCS-H1	solute carrier family 27 (fatty acid transporter), member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131200214-4	chr1	131200109	131200309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311094)	promoter-TSS (NM_001311094)	-24.0	NM_001311094	54354.0	Mm.248291	NM_018750	ENSMUSG00000026430	Rassf5	1300019G20Rik|Maxp1|Nore1|Nore1A|Nore1B|Rapl	Ras association (RalGDS/AF-6) domain family member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-31163289-5	chr9	31163196	31163396	+	859.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357698, intron 9 of 17)	intron (NM_001357698, intron 9 of 17)	-31497.0	NM_011176	19143.0	Mm.243926	NM_011176	ENSMUSG00000031995	St14	Epithin|MT-SP1|Prss14|Tmprss14|mCAP3|matriptase	suppression of tumorigenicity 14 (colon carcinoma)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-121313342-2	chr9	121313242	121313442	+	810.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_152160, intron 1 of 17)	B4A|SINE|B4	15840.0	NR_152160	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-62496056-4	chr3	62495958	62496158	+	839.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028136, intron 5 of 24)	intron (NM_028136, intron 5 of 24)	10930.0	NM_028136	72162.0	Mm.224233	NM_028136	ENSMUSG00000027770	Dhx36	2810407E23Rik|AI452301|AU022184|Ddx36|mKIAA1488	DEAH (Asp-Glu-Ala-His) box polypeptide 36	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-152830679-4	chr2	152830570	152830770	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289717)	promoter-TSS (NM_001289717)	47.0	NM_001289716	12048.0	Mm.238213	NM_009743	ENSMUSG00000007659	Bcl2l1	Bcl(X)L|Bcl-XL|Bcl2l|BclX|bcl-x|bcl2-L-1	BCL2-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-60268962-4	chr10	60268870	60269070	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1|SINE|Alu	-8658.0	NM_001146123	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-12781413-4	chr17	12781297	12781497	+	939.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027784, intron 2 of 2)	intron (NR_027784, intron 2 of 2)	-11691.0	NM_010515	16004.0	Mm.26553	NM_010515	ENSMUSG00000023830	Igf2r	AI661837|CD222|CI-MPR|M6P/IGF2R|Mpr300	insulin-like growth factor 2 receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-143035175-4	chr2	143035061	143035261	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27908.0	NM_021335	20639.0	Mm.1323	NM_021335	ENSMUSG00000008333	Snrpb2	2810052G09Rik	U2 small nuclear ribonucleoprotein B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153208323-4	chr2	153208223	153208423	+	927.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133847, intron 17 of 17)	MTC|LTR|ERVL-MaLR	17118.0	NM_198617	241732.0	Mm.277243	NM_198617	ENSMUSG00000074671	Tspyl3	AW212607|Gm36	TSPY-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105715195-4	chr8	105715103	105715303	+	857.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_027469)	TTS (NM_027469)	6914.0	NM_027655	71046.0	Mm.280888	NM_027655	ENSMUSG00000013158	4933405L10Rik	-	RIKEN cDNA 4933405L10 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-3601336-4	chr7	3601174	3601374	+	807.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14883.0	NM_175632	232790.0	Mm.358882	NM_175632	ENSMUSG00000054594	Oscar	mOSCAR|mOSCAR-M1|mOSCAR-M2|mOSCAR-M3	osteoclast associated receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-105478455-4	chr4	105478372	105478572	+	957.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	321125.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	0.431240203513859	1.12266202440658	0.157023540323609	0.329605106769924	0.302848140580374	0.551774639513968	0.158613345388812	0.152420374474583	-1.76170527352044	0.347184012018118	1
Merged-chr17-5555074-2	chr17	5554974	5555174	+	620.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	ORR1D1|LTR|ERVL-MaLR	62474.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-38227321-2	chr7	38227221	38227421	+	748.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_024413, intron 1 of 1)	intron (NM_024413, intron 1 of 1)	673.0	NM_024413	72287.0	Mm.333798	NM_024413	ENSMUSG00000074170	Plekhf1	1810013P09Rik|APPD|LAPF|PHAFIN1|ZFYVE15	pleckstrin homology domain containing, family F (with FYVE domain) member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-11715865-2	chr15	11715765	11715965	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	189809.0	NM_008728	18162.0	Mm.25259	NM_008728	ENSMUSG00000022206	Npr3	ANP-C|ANPR-C|EF-2|NPR-C|lgj|stri	natriuretic peptide receptor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-35327500-4	chr2	35327395	35327595	+	894.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013515, intron 1 of 6)	intron (NM_013515, intron 1 of 6)	9514.0	NM_013515	13830.0	Mm.295284	NM_013515	ENSMUSG00000026880	Stom	Epb7.2	stomatin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-44020206-3	chr4	44020112	44020312	+	713.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080384, intron 4 of 5)	intron (NM_001080384, intron 4 of 5)	7562.0	NM_001290470	12757.0	Mm.298875	NM_016760	ENSMUSG00000028478	Clta	AV026556|Lca	clathrin, light polypeptide (Lca)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-11036172-2	chr8	11036072	11036272	+	819.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_046017, intron 1 of 4)	intron (NR_046017, intron 1 of 4)	-27742.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-124674126-2	chr2	124674026	124674226	+	552.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20545.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-94566232-4	chr16	94566123	94566323	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	-3983.0	NM_007890	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-85900687-3	chr1	85900590	85900790	+	874.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022417, intron 1 of 5)	intron (NM_022417, intron 1 of 5)	6180.0	NM_022417	64294.0	Mm.29870	NM_022417	ENSMUSG00000026223	Itm2c	3110038L02Rik|BRI3|Bricd2c|E25|E25C|ITM3	integral membrane protein 2C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-114458392-4	chr6	114458272	114458472	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001317124)	promoter-TSS (NM_001317124)	-150.0	NM_001317124	15465.0	Mm.333327	NM_008285	ENSMUSG00000053004	Hrh1	Bphs|H1R|HH1R|Hir	histamine receptor H1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-50872826-2	chr15	50872726	50872926	+	686.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_032000, intron 1 of 5)	intron (NM_032000, intron 1 of 5)	16223.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-61346898-2	chr10	61346798	61346998	+	634.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013753, intron 9 of 19)	intron (NM_013753, intron 9 of 19)	36625.0	NM_013753	27355.0	Mm.269699	NM_013753	ENSMUSG00000020092	Pald1	MMPAL|Pald|mKIAA1274	phosphatase domain containing, paladin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-74589039-2	chr1	74588939	74589139	+	561.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_025784, intron 1 of 7)	intron (NM_025784, intron 1 of 7)	750.0	NM_025784	66821.0	Mm.358700	NM_025784	ENSMUSG00000026172	Bcs1l	9130022O19Rik	BCS1-like (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-4867042-2	chr7	4866948	4867148	+	956.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026158)	promoter-TSS (NM_026158)	-869.0	NM_026158	67441.0	Mm.41385	NM_026158	ENSMUSG00000052605	Isoc2b	0610042E07Rik|AI553388|Isoc2	isochorismatase domain containing 2b	protein-coding	1.28262234031107	1.3316939868264	0.755480443884051	1.36231807052234	1.78688731201867	1.34298828064574	0.758420149324553	0.746929605627461	0.17904125543089	0.902638338196429	0.998431161219273
Merged-chr6-122872990-4	chr6	122872870	122873070	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1587.0	NM_026267	67602.0	Mm.288114	NM_026267	ENSMUSG00000030327	Necap1	1200016B17Rik|AI747569|mFLJ00061	NECAP endocytosis associated 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99535052-4	chr7	99534975	99535175	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177231)	promoter-TSS (NM_177231)	-411.0	NM_178220	109689.0	Mm.260193	NM_177231	ENSMUSG00000018909	Arrb1	1200006I17Rik|AW208571|G430100A01Rik	arrestin, beta 1	protein-coding	1.34346221927695	2.51063489955226	2.30490144335747	3.03195414218283	1.10837042391024	1.22749966915932	2.05354848968112	2.86151446051751	-0.845963798146087	0.434609531618318	0.906825659421346
Merged-chr18-25461311-4	chr18	25461200	25461400	+	911.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033532, intron 10 of 10)	intron (NM_001033532, intron 10 of 10)	218448.0	NM_001362337	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-48826160-3	chr11	48826051	48826251	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053166)	promoter-TSS (NM_053166)	13.0	NM_053166	94089.0	Mm.390335	NM_053166	ENSMUSG00000040350	Trim7	AI790312	tripartite motif-containing 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-47294042-1	chr4	47293942	47294142	+	682.0	f0_balb.idr	intron (NM_009928, intron 28 of 39)	intron (NM_009928, intron 28 of 39)	-59180.0	NM_001312868	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-161058692-4	chr1	161058588	161058788	+	855.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172644, intron 7 of 16)	intron (NM_172644, intron 7 of 16)	11972.0	NM_172644	226539.0	Mm.28125	NM_172644	ENSMUSG00000026709	Dars2	5830468K18Rik|aspRS	aspartyl-tRNA synthetase 2 (mitochondrial)	protein-coding	1.94570719531744	1.27474348387904	1.98316743282352	1.92847137112895	2.39600584234308	1.5344302608863	2.23840816546505	2.44153719547063	1.02718535817775	0.298999680196599	0.800409222377854
Merged-chr7-19089016-4	chr7	19088907	19089107	+	910.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_032418, intron 9 of 14)	intron (NM_032418, intron 9 of 14)	2179.0	NR_037282	100526504.0		NR_037282	ENSMUSG00000092659	Mir3100	mir-3100|mmu-mir-3100	microRNA 3100	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-75895567-2	chr5	75895467	75895667	+	647.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	82861.0	NM_010612	16542.0	Mm.285	NM_010612	ENSMUSG00000062960	Kdr	6130401C07|Flk-1|Flk1|Krd-1|Ly73|VEGFR-2|VEGFR2|orv|sVEGFR-2	kinase insert domain protein receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-145050914-4	chr7	145050805	145051005	+	889.18335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-110980.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	1.6765535093857	2.80162507924993	1.9570492584688	1.90178444241721	1.93569311827735	1.88857890093443	1.82674861470543	1.42205612643721	-1.02066998811591	0.294622117315087	0.798191705447
Merged-chr7-109170651-4	chr7	109170554	109170754	+	874.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302206)	promoter-TSS (NM_001302206)	-135.0	NM_057173	109594.0	Mm.360145	NM_057173	ENSMUSG00000036111	Lmo1	Rbtn-1|Rbtn1|Ttg1	LIM domain only 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-66818929-2	chr1	66818829	66819029	+	772.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1334.0	NM_001122738	68691.0	Mm.240912	NM_177645	ENSMUSG00000026004	Kansl1l	1110028C15Rik|1190030G24|AI427598|C430010P07Rik|mKIAA4189	KAT8 regulatory NSL complex subunit 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101965760-2	chr7	101965660	101965860	+	617.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-4083.0	NM_133947	101706.0	Mm.27259	NM_133947	ENSMUSG00000066306	Numa1	6720401E04Rik|AA764025|AL022610|AU014979|NuMA	nuclear mitotic apparatus protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91549258-3	chr16	91549156	91549356	+	768.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008338, intron 1 of 6)	IMPB_01|Satellite|Satellite	2162.0	NM_008338	15980.0	Mm.249364	NM_008338	ENSMUSG00000022965	Ifngr2	Ifgr2|Ifgt	interferon gamma receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-17767102-3	chr10	17767003	17767203	+	960.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29116.0	NM_138628	378431.0	Mm.283493	NM_138628	ENSMUSG00000039891	Txlnb	2310001N14Rik|Mdp77	taxilin beta	protein-coding	2.48320083591603	2.82102832584277	1.7975877245496	1.45333595404039	3.80793292878146	3.62194290630485	3.1803748301763	3.85216960047455	2.45274579735332	0.000604694356894711	0.0130801494483583
Merged-chr5-147866360-4	chr5	147866299	147866499	+	672.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025624, intron 2 of 5)	ORR1A2-int|LTR|ERVL-MaLR	5771.0	NM_025624	66537.0	Mm.332855	NM_025624	ENSMUSG00000029649	Pomp	2510048O06Rik|Ump1	proteasome maturation protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-139377047-2	chr7	139376947	139377147	+	650.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12062.0	NM_183144	212111.0	Mm.28308	NM_183144	ENSMUSG00000025477	Inpp5a	-	inositol polyphosphate-5-phosphatase A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91182927-4	chr2	91182850	91183050	+	868.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145527)	promoter-TSS (NM_145527)	97.0	NM_001177719	228355.0	Mm.36410	NM_145527	ENSMUSG00000040687	Madd	9630059K23Rik|IG20	MAP-kinase activating death domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88445622-2	chr3	88445522	88445722	+	579.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013658, intron 10 of 14)	ORR1C2|LTR|ERVL-MaLR	-4671.0	NR_105978	102465611.0		NR_105978	ENSMUSG00000098655	Mir7011	Gm27677|mmu-mir-7011	microRNA 7011	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-6959087-2	chr17	6958987	6959187	+	715.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_147155, intron 2 of 3)	intron (NM_147155, intron 2 of 3)	2069.0	NM_147155	380608.0	Mm.371734	NM_147155	ENSMUSG00000052031	Tagap1	2610315E15Rik|AA415005|FKSG15	T cell activation GTPase activating protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-24429330-2	chr18	24429230	24429430	+	601.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029573)	promoter-TSS (NR_029573)	-160.0	NR_029573	387182.0		NR_029573	ENSMUSG00000065532	Mir187	Mirn187|mir-187|mmu-mir-187	microRNA 187	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-17002634-4	chr11	17002545	17002745	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019549, intron 1 of 9)	intron (NM_019549, intron 1 of 9)	6073.0	NM_019549	56193.0	Mm.98232	NM_019549	ENSMUSG00000020120	Plek	2010300B13Rik	pleckstrin	protein-coding	2.40394643198777	2.12977418446989	1.23157889249478	1.99250837207266	2.02810027165539	3.24481202065257	1.50851417730766	2.13773550634488	0.881103688151394	0.372303133843242	0.865109408625856
Merged-chr4-89351282-4	chr4	89351156	89351356	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132431, intron 2 of 9)	intron (NR_132431, intron 2 of 9)	-40224.0	NM_007670	12579.0	Mm.423094	NM_007670	ENSMUSG00000073802	Cdkn2b	AV083695|INK4b|MTS2|p15|p15(INK4b)|p15INK4b	cyclin dependent kinase inhibitor 2B	protein-coding	3.27458568523978	3.39139776668222	4.76660770093612	2.24509956567332	4.60205029766967	3.89850377140598	4.64937128686861	3.6499736175416	0.727929746042844	0.224679727671688	0.716363489146504
Merged-chr17-80112825-5	chr17	80112813	80113013	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14558.0	NM_176963	319625.0	Mm.29098	NM_176963	ENSMUSG00000035473	Galm	A530057M15Rik|AU015645|AU020959	galactose mutarotase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101382450-4	chr7	101382359	101382559	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040112, intron 1 of 30)	intron (NM_001040112, intron 1 of 30)	-3067.0	NM_027180	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-10994651-2	chr16	10994551	10994751	+	626.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1530.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-134078402-3	chr1	134078314	134078514	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007570, intron 1 of 1)	intron (NM_007570, intron 1 of 1)	741.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-77848533-1	chr1	77848433	77848633	+	678.0	f0_balb.idr	Intergenic	Intergenic	-333445.0	NM_007936	13838.0	Mm.400747	NM_007936	ENSMUSG00000026235	Epha4	2900005C20Rik|AI385584|Cek8|Hek8|Sek|Sek1|Tyro1|rb	Eph receptor A4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-121260212-1	chr5	121260112	121260312	+	695.666687	f0_balb.idr	intron (NM_181421, intron 4 of 75)	intron (NM_181421, intron 4 of 75)	39993.0	NM_181421	269700.0	Mm.184589	NM_181421	ENSMUSG00000042744	Hectd4	A130010L24|AU042671|BC019639|EG545802|Gm15800|mKIAA0614	HECT domain E3 ubiquitin protein ligase 4	protein-coding	0.255532286679647	0.326961510627898	0.117850391514898	0.112755679149331	0.105524858562249	0.987184826220035	0.308972741540542	0.564259551882455	2.54260275394958	0.193283833997028	1
Merged-chr9-88523034-4	chr9	88522918	88523118	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040721)	promoter-TSS (NR_040721)	-121.0	NR_040721	72655.0	Mm.21798	NR_040721	ENSMUSG00000097195	Snhg5	2810026P18Rik|4933428I09Rik|mU50HG-b	small nucleolar RNA host gene 5	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-94002517-2	chr2	94002417	94002617	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026944, intron 6 of 9)	intron (NM_026944, intron 6 of 9)	8213.0	NM_026944	69113.0	Mm.272498	NM_026944	ENSMUSG00000040174	Alkbh3	1700108H04Rik|1810020C19Rik|Abh3|mABH3	alkB homolog 3, alpha-ketoglutarate-dependent dioxygenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-113140271-4	chr12	113140143	113140343	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347443)	promoter-TSS (NM_001347443)	7.0	NM_024223	68337.0	Mm.133825	NM_024223	ENSMUSG00000006356	Crip2	0610010I23Rik|AW743261|C77570|CRP2|CRP4|Crp|ESP1|Hlp	cysteine rich protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-119938559-2	chr9	119938459	119938659	+	769.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_028735, intron 1 of 28)	B1_Mur1|SINE|Alu	953.0	NM_028735	74052.0	Mm.189573	NM_028735	ENSMUSG00000032514	Ttc21a	4921538N17Rik|AA387572|Thm2	tetratricopeptide repeat domain 21A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-68252105-3	chr18	68252012	68252212	+	878.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357444, intron 3 of 3)	intron (NM_001357444, intron 3 of 3)	8861.0	NR_106078	102465702.0		NR_106078	ENSMUSG00000098253	Mir7219	Gm27613|mmu-mir-7219	microRNA 7219	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-78358277-2	chr9	78358121	78358321	+	608.666626	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	9978.0	NM_025274	434423.0	Mm.139314	NM_025274	ENSMUSG00000060461	Dppa5a	AA536857|Dppa5|Esg1|ecat2	developmental pluripotency associated 5A	protein-coding	0.170715610965159	0.19301874951957	0.992920284891704	0.357391583946244	0.465683282809232	0.19464843246889	0.910015097862105	0.181115860558823	-0.0362546953481558	0.985237225404202	1
Merged-chr2-51013246-4	chr2	51013125	51013325	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	103541.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-137883914-4	chr4	137883788	137883988	+	933.55835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199307, intron 1 of 19)	intron (NM_199307, intron 1 of 19)	21651.0	NM_199307	230857.0	Mm.401062	NM_199307	ENSMUSG00000057530	Ece1	AW322500|ECE-1|ECE-1a|ECE-1b|ECE-1d	endothelin converting enzyme 1	protein-coding	2.88756517922061	3.79083765489307	2.860043390054	3.40052557071645	3.12956656242395	1.50339185077666	2.36139489386183	1.40204830915931	-1.73967614111048	0.0378902282141703	0.27674936573475
Merged-chr2-91255610-2	chr2	91255510	91255710	+	753.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289677)	promoter-TSS (NM_001289677)	-555.0	NM_001289677	80708.0	Mm.236650	NM_028733	ENSMUSG00000027257	Pacsin3	4921507A02Rik|6330413E15Rik|AW413130	protein kinase C and casein kinase substrate in neurons 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125366935-2	chr6	125366835	125367035	+	896.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_198604, intron 14 of 16)	intron (NM_198604, intron 14 of 16)	13569.0	NM_198604	213522.0	Mm.333396	NM_198604	ENSMUSG00000038167	Plekhg6	BC026778|Gm155	pleckstrin homology domain containing, family G (with RhoGef domain) member 6	protein-coding	0.00330236667631345	-0.434441504713276	-0.438012737514168	0.067231494991274	-0.444619155226351	-0.433634307889177	-0.43722644186584	-0.282243390487996	-2.51830200373021	0.32749585091717	1
Merged-chr8-53511091-2	chr8	53510991	53511191	+	669.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001205054)	promoter-TSS (NM_001205054)	-611.0	NM_001205054	11593.0	Mm.334535	NM_001005847	ENSMUSG00000031521	Aga	AW060726	aspartylglucosaminidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-11929794-3	chr19	11929693	11929893	+	876.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172635, intron 9 of 18)	intron (NM_172635, intron 9 of 18)	6065.0	NR_105960	102465601.0		NR_105960	ENSMUSG00000104979	Mir6994	mmu-mir-6994	microRNA 6994	ncRNA	3.56553228230676	2.21669679989553	3.8576731651448	4.04908996137418	1.74683706004195	1.42583853463349	2.63745244970644	1.61322134963793	-2.98875538925433	0.00027800759450997	0.00695869635381909
Merged-chr4-126253892-2	chr4	126253792	126253992	+	919.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145970, intron 1 of 16)	intron (NM_001145970, intron 1 of 16)	2427.0	NM_144941	245877.0	Mm.266716	NM_144941	ENSMUSG00000028849	Map7d1	AV028413|BC019977|Mtap7d1|Parcc1|Rprc1|mKIAA1187	MAP7 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140116664-2	chr5	140116564	140116764	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359025, intron 14 of 17)	B4A|SINE|B4	58254.0	NM_001359027	17120.0	Mm.27250	NM_010752	ENSMUSG00000029554	Mad1l1	AI173502|AW550425|Mad1	MAD1 mitotic arrest deficient 1-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-53914383-1	chr18	53914283	53914483	+	662.0	f0_balb.idr	intron (NM_152809, intron 4 of 12)	intron (NM_152809, intron 4 of 12)	52270.0	NM_152809	70425.0	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-66357240-3	chr6	66357146	66357346	+	835.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	84741.0	NR_136927	102633773.0	Mm.272086	NR_136927	ENSMUSG00000107653	Gm31520	-	sterol-C5-desaturase pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-139249456-4	chr4	139249357	139249557	+	761.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037761, intron 2 of 9)	intron (NM_001037761, intron 2 of 9)	55346.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	0.930263792702327	0.179691642726274	0.347062701193655	0.330178665458411	0.537922793722613	0.181014443955036	0.175118784809093	0.47150941620555	-0.909990933658413	0.630582401942762	1
Merged-chr17-84028705-4	chr17	84028620	84028820	+	958.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30168.0	NR_130994	78148.0	Mm.243918	NR_130994		8430430B14Rik	-	RIKEN cDNA 8430430B14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-60888440-2	chr8	60888340	60888540	+	628.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1953.0	NM_028299	72612.0	Mm.25263	NM_028299	ENSMUSG00000038005	Hpf1	2700029M09Rik|C230006B22Rik|C4orf27	histone PARylation factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-155560284-2	chr4	155560184	155560384	+	661.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2097.0	NM_138671	192185.0	Mm.28347	NM_138671	ENSMUSG00000029063	Nadk	4432404C02Rik|BC004012	NAD kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-21265975-2	chr19	21265873	21266073	+	842.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6305.0	NM_009551	22682.0	Mm.292405	NM_009551	ENSMUSG00000024750	Zfand5	2310057A04Rik|5830475F03Rik|AA415485|Za20d2|Zfp216	zinc finger, AN1-type domain 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-115808631-4	chr6	115808529	115808729	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028546)	promoter-TSS (NR_028546)	114.0	NM_172086	19951.0	Mm.104368	NM_172086	ENSMUSG00000057841	Rpl32	AU020185|rpL32-3A	ribosomal protein L32	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-137724327-4	chr4	137724203	137724403	+	973.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_138592)	promoter-TSS (NR_138592)	-158.0	NR_138592	110351.0	Mm.180763	NM_029563	ENSMUSG00000041351	Rap1gap	1300019I11Rik|2310004O14Rik|AI427470|ARPP-90|Gap|Rap1GAP1|Rap1ga1	Rap1 GTPase-activating protein	protein-coding	-0.884151943040017	-0.86624766296593	-0.874346483115882	-0.877999885265216	-0.883229761593409	-0.862865047594633	0.225856448367219	-0.877358843395171	3.5762970005776	0.2292649794022	1
Merged-chr8-122704770-2	chr8	122704670	122704870	+	591.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	-5661.0	NM_009824	12398.0	Mm.194339	NM_009824	ENSMUSG00000006362	Cbfa2t3	A630044F12Rik|AI465270|AW229127|Cbfa2t3h|ETO-2|Eto2|MTGR2	core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-97633274-2	chr13	97633174	97633374	+	750.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	73274.0	NR_046157	328314.0	Mm.138047	NR_046157	ENSMUSG00000110235	Gm5086	B230311A21|EG328314	predicted gene 5086	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-123564147-4	chr4	123564057	123564257	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199137, intron 1 of 92)	intron (NM_001199137, intron 1 of 92)	-52263.0	NR_105824	102465214.0		NR_105824	ENSMUSG00000099005	Mir6398	Gm27657|mmu-mir-6398	microRNA 6398	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-5576307-4	chr3	5576203	5576403	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163301)	promoter-TSS (NM_001163301)	-55.0	NM_008994	19302.0	Mm.132336	NM_008994	ENSMUSG00000040374	Pex2	D3Ertd138e|PAF-1|PMP35|Pxmp3	peroxisomal biogenesis factor 2	protein-coding	6.61774954213439	7.39896516166244	6.98620745889846	7.2292114315075	6.51356166656687	6.84059394926846	7.07874186901418	7.10756150511125	-0.190123026449358	0.35518161862079	0.853659667510465
Merged-chr1-95323201-4	chr1	95323093	95323293	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026321, intron 1 of 2)	intron (NM_026321, intron 1 of 2)	9565.0	NM_026321	67698.0	Mm.272705	NM_026321	ENSMUSG00000051185	Fam174a	2310044D20Rik|Fam174|Naa6|Tmem157	family with sequence similarity 174, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-96909449-4	chr5	96909364	96909564	+	988.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR26_Mus|LTR|ERVK	-11808.0	NR_131152	666266.0	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-80001427-2	chr18	80001341	80001541	+	716.916626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45454.0	NM_053117	93737.0	Mm.24678	NM_053117	ENSMUSG00000056214	Pard6g	2410049N21Rik|Par6a	par-6 family cell polarity regulator gamma	protein-coding	1.57306857778924	1.94159807933388	2.57289068637337	1.21407346894729	1.88094857494986	1.95613698378977	2.29721823502461	2.86672250243157	0.909404435453265	0.359554281360842	0.856306289008338
Merged-chr4-148657867-4	chr4	148657744	148657944	+	790.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085505, intron 3 of 10)	intron (NM_001085505, intron 3 of 10)	14527.0	NM_001085505	230909.0	Mm.332067	NM_001085505	ENSMUSG00000070577	Gm572	b2b1167Clo	predicted gene 572	protein-coding	3.93095316834889	3.72464029495662	4.03755804387482	2.95658156254034	3.2795165103274	3.67244175607858	3.18378954885439	2.39892281170365	-0.801545148929695	0.172569933355646	0.640477311274911
Merged-chr3-95693199-1	chr3	95693099	95693299	+	1000.0	f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-5282.0	NM_001301705	229595.0	Mm.490574	NM_144899	ENSMUSG00000015850	Adamtsl4	ADAMTSL-4|Tsrc1	ADAMTS-like 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-41310769-4	chr4	41310681	41310881	+	921.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026893, intron 2 of 8)	RSINE1|SINE|B4	4120.0	NM_026893	68970.0	Mm.28891	NM_026893	ENSMUSG00000028436	Dcaf12	1500001L20Rik|5830424K06Rik|AA420338|AI851081|Wdr40a	DDB1 and CUL4 associated factor 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-147450458-1	chr5	147450358	147450558	+	555.0	f0_balb.idr	intron (NM_028291, intron 1 of 18)	intron (NM_028291, intron 1 of 18)	20302.0	NM_028291	72587.0	Mm.320469	NM_028291	ENSMUSG00000029647	Pan3	2700050F09Rik|A430027N15Rik|AU014670	PAN3 poly(A) specific ribonuclease subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-5730075-2	chr11	5729975	5730175	+	703.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077661, intron 1 of 5)	L1MC4|LINE|L1	11101.0	NM_001361590	72046.0	Mm.271657	NM_178623	ENSMUSG00000049680	Urgcp	2010005J08Rik|9130001I21Rik|AW060359|Urg4|mKIAA1507	upregulator of cell proliferation	protein-coding	2.82476929342354	2.78951176624604	2.31124413360073	2.38231371309688	2.59820744186966	2.69195504896513	3.48415304538393	1.44041237992645	0.300548761552751	0.718741783045485	0.998431161219273
Merged-chr11-83192285-3	chr11	83192160	83192360	+	920.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011409, intron 1 of 2)	intron (NM_011409, intron 1 of 2)	930.0	NM_011409	20557.0	Mm.290922	NM_011409	ENSMUSG00000018986	Slfn3	-	schlafen 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-19635966-2	chr2	19635866	19636066	+	681.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	21931.0	NR_033642	100041244.0	Mm.407223	NR_033642		Gm3230	-	predicted gene 3230	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-40703156-4	chr4	40703052	40703252	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025545)	promoter-TSS (NM_025545)	42.0	NM_001025444	66408.0	Mm.430710	NM_025545	ENSMUSG00000028411	Aptx	2410016G21Rik|AA388047|FHA-HIT	aprataxin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139337217-2	chr5	139337117	139337317	+	633.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_197980)	TTS (NM_197980)	7949.0	NM_197980	68033.0	Mm.261064	NM_197980	ENSMUSG00000045438	Cox19	1810074D02Rik|2810437L13Rik	cytochrome c oxidase assembly protein 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-49248885-3	chr11	49248802	49249002	+	795.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110149, intron 1 of 1)	intron (NM_001110149, intron 1 of 1)	1425.0	NM_001110149	17308.0	Mm.196933	NM_010794	ENSMUSG00000020346	Mgat1	Mgat-1	mannoside acetylglucosaminyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-10660172-4	chr10	10660074	10660274	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54229.0	NR_033630	382450.0	Mm.422788	NR_033630	ENSMUSG00000098065	Gm5177	EG382450	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-180223255-2	chr2	180223155	180223355	+	587.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081171, intron 1 of 78)	intron (NM_001081171, intron 1 of 78)	2604.0	NM_001081171	16776.0	Mm.4339	NM_001081171	ENSMUSG00000015647	Lama5	AA408760|AA408762|AI853660|[a]5|laminin-511|mKIAA0533	laminin, alpha 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-35633533-2	chr8	35633430	35633630	+	894.5	f0_balb.idr|f1_balb.idr	intron (NM_001081279, intron 1 of 2)	B4A|SINE|B4	-44510.0	NR_040376	100504714.0	Mm.381744	NR_040376	ENSMUSG00000097357	Gm16793	-	predicted gene, 16793	ncRNA	2.1313311827664	3.83356375266571	1.52517427850793	1.15993029201036	2.00001295336433	4.17823950808963	1.80374396454984	2.4316552330143	0.604756563994148	0.68317445584703	0.995882295196263
Merged-chr2-60907838-2	chr2	60907738	60907938	+	956.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	-26400.0	NM_001141931	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-95170295-4	chr9	95170201	95170401	+	954.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177909, intron 14 of 15)	intron (NM_177909, intron 14 of 15)	236969.0	NM_018763	54371.0	Mm.212446	NM_018763	ENSMUSG00000033350	Chst2	AI428561|AW121776|C130041E03Rik|Chts2|GST-2|GlcNAc6ST|Gn6st	carbohydrate sulfotransferase 2	protein-coding	3.02688751174751	3.54643454338671	3.27463163997979	2.9008460746868	3.13069517407966	2.98671280909025	3.38299473804661	3.28363287736201	-0.00108895969441175	0.998522007630698	0.999479715059607
Merged-chr7-16001555-2	chr7	16001455	16001655	+	721.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TATG)n|Simple_repeat|Simple_repeat	-2060.0	NM_001081418	243842.0	Mm.440249	NM_001081418	ENSMUSG00000070808	Bicra	Gltscr1	BRD4 interacting chromatin remodeling complex associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-117908726-2	chr6	117908626	117908826	+	860.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166428, intron 1 of 3)	intron (NM_001166428, intron 1 of 3)	922.0	NM_001166429	98758.0	Mm.422979	NM_133834	ENSMUSG00000042079	Hnrnpf	4833420I20Rik|AA407306|Hnrpf	heterogeneous nuclear ribonucleoprotein F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101450090-4	chr7	101450010	101450210	+	839.645874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001243758)	promoter-TSS (NM_001243758)	-410.0	NM_001243758	207728.0	Mm.247564	NM_001008548	ENSMUSG00000030653	Pde2a	CGS-PDE|cGSPDE	phosphodiesterase 2A, cGMP-stimulated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-124683576-2	chr2	124683476	124683676	+	653.3000490000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29995.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-68905324-3	chr18	68905249	68905449	+	758.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038051, intron 3 of 6)	intron (NR_038051, intron 3 of 6)	46179.0	NR_038051	78931.0	Mm.160155	NR_038051		4930546C10Rik	-	RIKEN cDNA 4930546C10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-115311132-4	chr8	115311020	115311220	+	847.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019573, intron 8 of 8)	intron (NM_019573, intron 8 of 8)	395774.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-116655291-4	chr4	116655194	116655394	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3620.0	NM_021473	58810.0	Mm.30085	NM_021473	ENSMUSG00000028692	Akr1a1	2610201A18Rik|Akr1a4	aldo-keto reductase family 1, member A1 (aldehyde reductase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-142895291-4	chr5	142895174	142895374	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033312)	promoter-TSS (NM_001033312)	-36.0	NM_001033312	231863.0	Mm.89753	NM_001033312	ENSMUSG00000066640	Fbxl18	AI427077|B130019G13Rik|C330021B20Rik	F-box and leucine-rich repeat protein 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-142820920-2	chr5	142820820	142821020	+	572.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-3533.0	NM_001122730	231861.0	Mm.354649	NM_178242	ENSMUSG00000039477	Tnrc18	BC025631|EG381742|Zfp469	trinucleotide repeat containing 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-139230367-1	chr7	139230267	139230467	+	761.5	f1_balb.idr	intron (NM_027164, intron 8 of 10)	intron (NM_027164, intron 8 of 10)	-17060.0	NM_001162540	57740.0	Mm.65336	NM_021302	ENSMUSG00000015981	Stk32c	PKE|Pkek|YANK3	serine/threonine kinase 32C	protein-coding	0.996443438913177	2.40991298318709	1.04743497727768	1.44542964790501	1.53392319220924	1.88048762569156	2.05655654246002	2.08759046730544	0.753037132263024	0.521666347764285	0.947836760490745
Merged-chr4-129808537-2	chr4	129808452	129808652	+	664.5	f0_c57.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-11927.0	NM_008974	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	2.57177755214353	2.10390855462995	1.88664970455595	2.64274730505281	2.21181830733504	1.57139198930503	1.28039746238149	2.11168677866444	-1.20881520877301	0.213700532528038	0.7035593879412
Merged-chr5-113899349-4	chr5	113899263	113899463	+	880.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011779, intron 1 of 10)	intron (NM_011779, intron 1 of 10)	9343.0	NM_011779	23790.0	Mm.260158	NM_011779	ENSMUSG00000004530	Coro1c	AL022675|AW455561|AW548837	coronin, actin binding protein 1C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-119112040-2	chr4	119111940	119112140	+	737.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011400, intron 1 of 9)	intron (NM_011400, intron 1 of 9)	3295.0	NM_011400	20525.0	Mm.21002	NM_011400	ENSMUSG00000028645	Slc2a1	Glut-1|Glut1	solute carrier family 2 (facilitated glucose transporter), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-3502279-2	chr5	3502179	3502379	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 5 of 7)	intron (NM_009873, intron 5 of 7)	-41554.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111425479-4	chr12	111425389	111425589	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289487, intron 6 of 13)	intron (NM_001289487, intron 6 of 13)	8044.0	NM_001289488	74190.0	Mm.248640	NM_028807	ENSMUSG00000021280	Exoc3l4	1200009I06Rik|1600013K19Rik	exocyst complex component 3-like 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-143488187-4	chr5	143488073	143488273	+	908.283325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144915, intron 8 of 14)	intron (NM_144915, intron 8 of 14)	23680.0	NM_144915	231871.0	Mm.469963	NM_144915	ENSMUSG00000039206	Daglb	E330036I19Rik	diacylglycerol lipase, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-46404865-4	chr18	46404773	46404973	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60943.0	NR_045438	72076.0	Mm.82766	NM_028086		Mospd4	2010013H21Rik	motile sperm domain containing 4	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-129416638-2	chr6	129416538	129416738	+	682.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205363, intron 4 of 6)	RMER17C|LTR|ERVK	7776.0	NM_001205364	232414.0	Mm.391518	NM_172732	ENSMUSG00000046080	Clec9a	9830005G06Rik|DNGR-1	C-type lectin domain family 9, member a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-49252622-3	chr7	49252531	49252731	+	789.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175272, intron 1 of 37)	intron (NM_175272, intron 1 of 37)	6442.0	NM_175272	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-64039032-3	chr15	64038941	64039141	+	678.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360037, intron 1 of 11)	intron (NM_001360037, intron 1 of 11)	20723.0	NM_001360038	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-87452248-3	chr14	87452147	87452347	+	880.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253755, intron 1 of 11)	intron (NM_001253755, intron 1 of 11)	35664.0	NM_001253755	219249.0	Mm.35168	NM_172605	ENSMUSG00000022019	Tdrd3	4732418C03Rik|6720468N18	tudor domain containing 3	protein-coding	3.20867677119738	3.38846468557167	2.17942152971826	3.03534220072533	2.82196967422267	1.53520066984339	1.76890685301213	3.33346006270023	-0.782666125358423	0.350964627713368	0.851599083855668
Merged-chr5-29731804-2	chr5	29731704	29731904	+	705.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-4094.0	NM_001359198	23950.0	Mm.290110	NM_011847	ENSMUSG00000029131	Dnajb6	HSJ-2|Mrj|mDj4	DnaJ heat shock protein family (Hsp40) member B6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-96421016-2	chr11	96420916	96421116	+	634.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43531.0	NR_033524	100038600.0	Mm.483549	NR_033524		Gm11529	-	predicted gene 11529	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128762746-3	chr2	128762670	128762870	+	803.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 8 of 18)	MTD|LTR|ERVL-MaLR	-55533.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41829847-4	chr19	41829709	41829909	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008043)	promoter-TSS (NM_008043)	-161.0	NM_008043	14296.0	Mm.4573	NM_008043	ENSMUSG00000067199	Frat1	AW060382	frequently rearranged in advanced T cell lymphomas	protein-coding	0.755100497163939	0.504167129021341	1.07929072579793	1.1364138696157	0.762325099846152	0.506015899848284	1.0909317557745	0.490697847597254	-0.824524524977449	0.618514140684391	1
Merged-chr2-34771959-4	chr2	34771925	34772125	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022310)	promoter-TSS (NM_022310)	-65.0	NM_001163434	14828.0	Mm.330160	NM_022310	ENSMUSG00000026864	Hspa5	AL022860|AU019543|Bip|D2Wsu141e|D2Wsu17e|Grp78|Hsce70|SEZ-7|Sez7|baffled|mBiP	heat shock protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106202180-2	chr11	106202080	106202280	+	807.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_026009, intron 11 of 12)	intron (NM_026009, intron 11 of 12)	-8577.0	NM_001252449	72149.0	Mm.403722	NM_028126	ENSMUSG00000069631	Strada	2610019A05Rik|6030402H20Rik|AI480680|E130112C09Rik	STE20-related kinase adaptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70704082-2	chr8	70704026	70704226	+	725.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6387.0	NM_001286944	16478.0	Mm.419851	NM_010592	ENSMUSG00000071076	Jund	Jund1	jun D proto-oncogene	protein-coding	0.969793042277296	0.696148143718074	0.887720684630459	1.65457887370581	0.978077224775093	1.51606320737122	0.686741687391215	1.16843743202272	0.02631577303694	0.985398312179991	0.998431161219273
Merged-chr12-38780287-4	chr12	38780180	38780380	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_007960, exon 1 of 13)	5' UTR (NM_007960, exon 1 of 13)	198.0	NM_007960	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	2.07023636130301	1.13940113408403	3.37906340188062	1.06861173490419	2.3007736586752	2.81114467662531	2.01218679489759	1.07427775182433	-0.219657860065587	0.907362100686097	0.998431161219273
Merged-chr19-4151535-2	chr19	4151435	4151635	+	547.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011778, intron 7 of 10)	intron (NM_011778, intron 7 of 10)	2872.0	NM_011778	23789.0	Mm.276859	NM_011778	ENSMUSG00000024835	Coro1b	-	coronin, actin binding protein 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-106794252-4	chr6	106794144	106794344	+	946.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175357, exon 4 of 11)	exon (NM_175357, exon 4 of 11)	5843.0	NM_021449	58799.0	Mm.290085	NM_021449	ENSMUSG00000005362	Crbn	2610203G15Rik|2900045O07Rik|AF229032|AW108261|piL	cereblon	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-13170154-3	chr2	13170041	13170241	+	919.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009105, intron 7 of 8)	intron (NM_009105, intron 7 of 8)	101274.0	NM_009105	20163.0	Mm.905	NM_009105	ENSMUSG00000026727	Rsu1	RsuI|rsp-1	Ras suppressor protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133759606-2	chr4	133759518	133759718	+	560.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6007.0	NM_001080819	93760.0	Mm.22478	NM_001080819	ENSMUSG00000007880	Arid1a	1110030E03Rik|BAF250a|Osa1|Smarcf1	AT rich interactive domain 1A (SWI-like)	protein-coding	-1.58994551673671	-1.55912852307891	-1.56844783632235	-1.57610299769523	-1.18549093183599	-1.55710898902261	-1.56633814807757	-1.57473272746952	1.78703309985663	0.610309988231842	1
Merged-chr8-70806079-2	chr8	70806028	70806228	+	891.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2321.0	NM_008353	16161.0	Mm.731	NM_008353	ENSMUSG00000000791	Il12rb1	CD212|IL-12R[b]	interleukin 12 receptor, beta 1	protein-coding	-0.859082918983678	-0.988263333422384	-1.00040322824838	-1.00311683473178	-1.00626376281094	-0.985632567570811	-0.997655022158689	-0.350334081862082	2.02436496650785	0.517018710074872	1
Merged-chr13-94050245-4	chr13	94050131	94050331	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7565.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27132760-1	chr17	27132660	27132860	+	766.0	f1_balb.idr	intron (NM_026063, intron 1 of 3)	intron (NM_026063, intron 1 of 3)	1131.0	NM_026063	67267.0	Mm.272389	NM_026063	ENSMUSG00000024208	Uqcc2	2900010M23Rik|Cbp6|M19|Mnf1	ubiquinol-cytochrome c reductase complex assembly factor 2	protein-coding	-1.25988825775205	-1.23266949163275	-0.79486201900107	-1.25163205568768	-1.11141665311639	-1.23041342511115	-1.24072352446377	-1.25010129626714	-1.35571397712562	0.687237561566449	1
Merged-chr18-79324006-3	chr18	79323935	79324135	+	774.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-214644.0	NM_053099	240427.0	Mm.312871	NM_053099	ENSMUSG00000024548	Setbp1	C130092E12|Seb|mKIAA0437	SET binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-50842087-4	chr2	50841960	50842160	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-67624.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-6055826-4	chr18	6055730	6055930	+	933.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029277, intron 7 of 17)	intron (NM_029277, intron 7 of 17)	80268.0	NM_029277	75415.0	Mm.239675	NM_029277	ENSMUSG00000041225	Arhgap12	2810011M08Rik	Rho GTPase activating protein 12	protein-coding	1.10376805861281	1.53121877059076	1.66374339318569	0.659106290631731	1.66877185468319	0.686296831992688	0.672732971868041	0.660971843463917	-1.03480303103079	0.515254535134548	0.947402641287243
Merged-chr7-111081249-2	chr7	111081149	111081349	+	887.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013507, intron 2 of 21)	intron (NM_013507, intron 2 of 21)	1781.0	NM_001040131	13690.0	Mm.185453	NM_013507	ENSMUSG00000005610	Eif4g2	DAP-5|E130105L11Rik|Nat1|Natm1|p97	eukaryotic translation initiation factor 4, gamma 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-43467128-4	chr1	43467024	43467224	+	843.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010879, intron 1 of 4)	intron (NM_010879, intron 1 of 4)	21373.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-105680795-2	chr2	105680695	105680895	+	551.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310144, intron 3 of 11)	intron (NM_001310144, intron 3 of 11)	-1668.0	NM_001310146	18508.0	Mm.3608	NM_013627	ENSMUSG00000027168	Pax6	1500038E17Rik|AEY11|Dey|Gsfaey11|Pax-6|Sey	paired box 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-16260787-2	chr19	16260687	16260887	+	702.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008139, intron 2 of 6)	intron (NM_008139, intron 2 of 6)	54217.0	NR_105832	102465218.0		NR_105832	ENSMUSG00000098718	Mir496b	Gm28028|mmu-mir-496b	microRNA 496b	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-20538712-4	chr3	20538588	20538788	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16_Mm|LTR|ERVK	-171511.0	NM_175086	11608.0	Mm.134863	NM_175086	ENSMUSG00000054988	Agtr1b	AT1B|AT2R1B|Agtr-1b|Angtr-1b	angiotensin II receptor, type 1b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-49979329-4	chr18	49979220	49979420	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177760)	promoter-TSS (NM_001177760)	-107.0	NM_001177760	106869.0	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-30002117-1	chr17	30002017	30002217	+	769.0	f1_balb.idr	Intergenic	Intergenic	-2922.0	NM_148926	21769.0	Mm.220972	NM_148926	ENSMUSG00000044477	Zfand3	AW539211|TEG-27|Tex27	zinc finger, AN1-type domain 3	protein-coding	1.75982352764855	1.10263953890301	1.08173541630068	1.74090389938703	1.54128451914658	2.11525221094254	2.13997669608464	1.97384425735301	1.509199920511	0.183146028157478	0.658031357306876
Merged-chr18-30513333-4	chr18	30513215	30513415	+	963.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	240450.0	NR_151699	225326.0	Mm.194127	NM_181414	ENSMUSG00000033628	Pik3c3	5330434F23Rik|Vps34	phosphatidylinositol 3-kinase catalytic subunit type 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10458307-4	chr19	10458199	10458399	+	868.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001111140)	promoter-TSS (NM_001111140)	-852.0	NM_001111140	278795.0	Mm.490638	NM_001111140	ENSMUSG00000090291	Lrrc10b	Gm705|SerdinR	leucine rich repeat containing 10B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-146343934-3	chr3	146343885	146344085	+	891.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34959.0	NR_033542	100038607.0	Mm.365888	NR_033542	ENSMUSG00000105602	Gm10636	-	predicted gene 10636	ncRNA	0.220596441079509	-0.145278268503697	-0.150362507571294	-0.154288916251407	-0.159843606252248	-0.144132922107892	0.634498027367072	0.159504267151196	1.75173309900785	0.455979538577037	1
Merged-chr11-77802767-4	chr11	77802668	77802868	+	982.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291214, intron 1 of 38)	intron (NM_001291214, intron 1 of 38)	1470.0	NM_001291215	360013.0	Mm.341248	NM_011586	ENSMUSG00000000631	Myo18a	MAJN|MyoPDZ|MysPDZ|SP-R210	myosin XVIIIA	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-24109336-1	chr6	24109236	24109436	+	615.0	f0_balb.idr	intron (NM_019481, intron 7 of 14)	intron (NM_019481, intron 7 of 14)	58756.0	NM_019481	55961.0	Mm.19299	NM_019481	ENSMUSG00000029700	Slc13a1	AI314066|AI987826|NaSi-1|Nas1	solute carrier family 13 (sodium/sulfate symporters), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-76110575-4	chr16	76110479	76110679	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12034.0	NR_040575	78215.0	Mm.243885	NR_040575		4930578N18Rik	-	RIKEN cDNA 4930578N18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80392716-2	chr10	80392616	80392816	+	665.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001306143, exon 7 of 7)	3' UTR (NM_001306143, exon 7 of 7)	-5065.0	NM_198615	237400.0	Mm.268389	NM_198615	ENSMUSG00000048696	Mex3d	BC059858|Rkhd1	mex3 RNA binding family member D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-136088825-2	chr5	136088725	136088925	+	683.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039103, intron 1 of 19)	intron (NM_001039103, intron 1 of 19)	4909.0	NM_001039103	54153.0	Mm.290655	NM_133914	ENSMUSG00000004952	Rasa4	AA793972|AW112107|BB079060|CAPRI|GAPL	RAS p21 protein activator 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-21942486-3	chr19	21942394	21942594	+	688.444458	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	164154.0	NM_031997	83921.0	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	3.48221867880483	2.48585864528685	3.34556631166785	3.17032003615974	3.03402515956419	3.64050729547664	2.58677961830847	3.49029502463074	0.113447118193658	0.856983014766857	0.998431161219273
Merged-chr11-59534537-4	chr11	59534452	59534652	+	872.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28|LTR|ERVL	-7017.0	NM_001359638	216799.0	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-25035303-4	chr15	25035201	25035401	+	831.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16_Mm|LTR|ERVK	378463.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-25076299-2	chr8	25076199	25076399	+	741.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_031257, intron 2 of 11)	ORR1B1|LTR|ERVL-MaLR	25512.0	NM_031257	83436.0	Mm.261122	NM_031257	ENSMUSG00000031557	Plekha2	6430512N22Rik|AI851530|AU041791|TAPP2|W91773	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-123260840-4	chr9	123260692	123260892	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001002267)	promoter-TSS (NM_001002267)	-3.0	NM_001002267	72309.0	Mm.8569	NM_001002267	ENSMUSG00000054871	Tmem158	2310037P21Rik|Ris1	transmembrane protein 158	protein-coding	1.08160055715983	2.47747265599774	1.16062352905875	1.3941563236469	1.98174754367126	2.95225266816621	2.7736446024048	2.21570260848737	2.05175910990972	0.0506193910739433	0.327814746728232
Merged-chr15-97826872-2	chr15	97826772	97826972	+	657.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001204276, intron 1 of 25)	intron (NM_001204276, intron 1 of 25)	4895.0	NM_019572	56233.0	Mm.384027	NM_019572	ENSMUSG00000022475	Hdac7	5830434K02Rik|HD7|HD7a|Hdac7a|mFLJ00062	histone deacetylase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167763523-2	chr2	167763423	167763623	+	901.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	72346.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120988561-4	chr11	120988467	120988667	+	909.662476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027874, intron 1 of 9)	intron (NM_027874, intron 1 of 9)	2766.0	NM_139059	104318.0	Mm.216227	NM_027874	ENSMUSG00000025162	Csnk1d	1200006A05Rik|AA409348|D930010H05Rik	casein kinase 1, delta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-53589322-5	chr5	53589164	53589364	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080928, intron 1 of 10)	CpG	-1082.0	NM_009035	19664.0	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-73456630-2	chr2	73456530	73456730	+	579.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153138, intron 1 of 7)	L2b|LINE|L2	-2741.0	NM_001289722	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-124709496-4	chr2	124709340	124709540	+	735.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55859.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-4161656-2	chr9	4161556	4161756	+	889.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3C|LINE|L1	147838.0	NM_026276	67618.0	Mm.33970	NM_026276	ENSMUSG00000025894	Aasdhppt	2010309J24Rik|2810407B07Rik|AASD-PPT|CGI-80|LYS2|LYS5	aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-87959659-2	chr3	87959559	87959759	+	581.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10966.0	NM_007759	12904.0	Mm.4757	NM_007759	ENSMUSG00000004885	Crabp2	AI893628|Crabp-2|CrabpII	cellular retinoic acid binding protein II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-3499895-2	chr8	3499795	3499995	+	603.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053177)	promoter-TSS (NM_053177)	-624.0	NM_053177	94178.0	Mm.8356	NM_053177	ENSMUSG00000004567	Mcoln1	2210015I05Rik|TRPML1|mucolipidin	mucolipin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-36464966-2	chr16	36464866	36465066	+	713.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9574.0	NM_025288	20863.0	Mm.136573	NM_025288	ENSMUSG00000054905	Stfa3	Stf3	stefin A3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-34882966-4	chr4	34882808	34883008	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013889)	promoter-TSS (NM_013889)	40.0	NM_013889	30046.0	Mm.38193	NM_013889	ENSMUSG00000039967	Zfp292	5730450D02Rik|5830493J20Rik|9430062L07Rik|AI449016|Krox-10|Zfp-15|Zfp15|Zn-15|Zn-16|mKIAA0530	zinc finger protein 292	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-131423167-6	chr2	131423076	131423276	+	920.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68686.0	NM_001177834	228608.0	Mm.136586	NM_145533	ENSMUSG00000027333	Smox	B130066H01Rik|PAO|PAOh1|SMO	spermine oxidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-93357666-4	chr10	93357549	93357749	+	984.238098	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	21438.0	NR_038014	432488.0	Mm.32833	NR_038014		Gm17745	Gm3546	predicted gene, 17745	ncRNA	0.469930494684299	0.516821502072794	0.501916945237435	0.490124606245444	1.32688890300925	0.778923609457682	1.9873560375225	1.1961132910715	4.98752794423705	0.00212953826195696	0.0349372646729187
Merged-chr2-166082239-5	chr2	166082045	166082245	+	767.200012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252579, intron 11 of 20)	intron (NM_001252579, intron 11 of 20)	73140.0	NM_001355619	72043.0	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	-1.70003445307235	-1.66995014428655	-1.82219692308314	-1.8296700802997	-1.84107162572744	-1.81112766086929	-1.82013739341899	-1.82833238873095	-1.35620376503822	0.700603325690936	1
Merged-chr2-168955545-4	chr2	168955425	168955625	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009564)	promoter-TSS (NM_009564)	62.0	NM_009564	22722.0	Mm.2095	NM_009564	ENSMUSG00000027551	Zfp64	-	zinc finger protein 64	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-120123192-3	chr1	120123162	120123362	+	984.0888669999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001172074, intron 1 of 4)	intron (NM_001172074, intron 1 of 4)	2075.0	NM_001172074	73103.0	Mm.271602	NM_028439	ENSMUSG00000026388	3110009E18Rik	-	RIKEN cDNA 3110009E18 gene	protein-coding	3.89335745743576	4.02899687803082	4.35359552792924	2.82394372317246	3.4119522170161	4.12535990355774	3.9278284281788	4.26185830134512	0.115377848859499	0.822258047808551	0.998431161219273
Merged-chr6-29544135-3	chr6	29544043	29544243	+	917.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177296, intron 21 of 22)	intron (NM_177296, intron 21 of 22)	14861.0	NM_001252382	27056.0	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-7300707-4	chr7	7300611	7300811	+	957.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_126157, exon 1 of 3)	non-coding (NR_126157, exon 1 of 3)	140.0	NR_126157	12727.0	Mm.297883	NM_011334	ENSMUSG00000000605	Clcn4	Clc4-2|Clcn4-2|clC-4	chloride channel, voltage-sensitive 4	protein-coding	1.35173436186809	2.02892754060631	1.95641394124235	1.55872844623993	1.81309297752949	1.50659907900867	1.061298459579	1.56642098155936	-0.759455963496667	0.500014862967672	0.938059363548374
Merged-chr13-30623935-2	chr13	30623835	30624035	+	755.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045975, exon 4 of 4)	non-coding (NR_045975, exon 4 of 4)	8892.0	NR_045975	75090.0	Mm.292232	NR_045975	ENSMUSG00000086263	4930519D14Rik	-	RIKEN cDNA 4930519D14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-147532095-4	chr5	147532006	147532206	+	906.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028291, intron 13 of 18)	intron (NM_028291, intron 13 of 18)	101950.0	NM_028291	72587.0	Mm.320469	NM_028291	ENSMUSG00000029647	Pan3	2700050F09Rik|A430027N15Rik|AU014670	PAN3 poly(A) specific ribonuclease subunit	protein-coding	-0.802593673557486	-0.793094718163527	-0.341243695287107	-0.798614554876962	-0.802002397560642	-0.791090896558683	-0.332078011335404	-0.79819523297655	0.040958530317021	0.989184000390448	1
Merged-chr3-130073237-4	chr3	130073147	130073347	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12340.0	NM_207209	99683.0	Mm.192303	NM_207209	ENSMUSG00000001052	Sec24b	AI605202|SEC24	Sec24 related gene family, member B (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-101698131-2	chr4	101698031	101698231	+	689.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19276.0	NM_001122899	16847.0	Mm.259282	NM_010704	ENSMUSG00000057722	Lepr	LEPROT|Leprb|Modb1|OB-RGRP|Obr|db|diabetes|obese-like|obl	leptin receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-79850138-3	chr10	79850030	79850230	+	860.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 3 of 4)	L1MB8|LINE|L1	-4302.0	NM_001077363	19205.0	Mm.265610	NM_008956	ENSMUSG00000006498	Ptbp1	AA407203|AL033359|HNRPI|PTB-1|PTB2|PTB3|PTB4|Ptb|pPTB	polypyrimidine tract binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-40659171-3	chr19	40659064	40659264	+	865.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009848)	promoter-TSS (NM_009848)	-606.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-117086712-1	chr2	117086612	117086812	+	549.0	f1_c57bl6.idr	Intergenic	Intergenic	-34359.0	NM_001277256	114715.0	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-83297567-3	chr17	83297490	83297690	+	796.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-53341.0	NM_001114361	78798.0	Mm.295565	NM_199466	ENSMUSG00000032624	Eml4	4930443C24Rik|AI644019	echinoderm microtubule associated protein like 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-118937819-4	chr14	118937719	118937919	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008929)	promoter-TSS (NM_008929)	-113.0	NM_008929	100037258.0	Mm.12616	NM_008929	ENSMUSG00000022136	Dnajc3	AA408985|AU067833|Dnajc3a|Dnajc3b|Prkri|mp58|p58|p58IPK	DnaJ heat shock protein family (Hsp40) member C3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-142748118-4	chr6	142748006	142748206	+	933.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8580.0	NM_009908	12764.0	Mm.3820	NM_009908	ENSMUSG00000030282	Cmas	AW208911|CMPNeu5Ac|D6Bwg0250e	cytidine monophospho-N-acetylneuraminic acid synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-16178806-1	chr19	16178706	16178906	+	592.5	f0_balb.idr	intron (NM_008139, intron 1 of 6)	intron (NM_008139, intron 1 of 6)	14708.0	NR_033228	595139.0	Mm.405662	NR_033228		E030024N20Rik	9030417F11Rik|Ppia-ps8	peptidylprolyl isomerase A pseudogene 8	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-13448466-3	chr16	13448354	13448554	+	770.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1069.0	NR_030549	100124432.0		NR_030549	ENSMUSG00000076972	Mir193b	Mir193|Mirn193b|mir-193b	microRNA 193b	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-64047505-1	chr11	64047405	64047605	+	682.0	f1_c57bl6.idr	intron (NM_178379, intron 3 of 6)	intron (NM_178379, intron 3 of 6)	31967.0	NM_178379	70383.0	Mm.340211	NM_178379	ENSMUSG00000042148	Cox10	2410004F01Rik|AU042636	cytochrome c oxidase assembly protein 10	protein-coding	2.21728576523644	2.16892676919749	3.16567428195672	1.7387058303704	1.80098639692256	1.1644536252901	1.13252068634395	1.90122508951111	-2.22615761551396	0.0340963051988987	0.260344168292142
Merged-chr12-81796769-3	chr12	81796654	81796854	+	872.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR18-int|LTR|ERVK	-15584.0	NM_001174107	338372.0	Mm.35284	NM_177395	ENSMUSG00000042724	Map3k9	E130314H24Rik|Mlk1|Prke1	mitogen-activated protein kinase kinase kinase 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-21567832-1	chr17	21567732	21567932	+	610.0	f1_c57bl6.idr	intron (NM_001002008, intron 1 of 5)	Lx5b|LINE|L1	854.0	NM_001357347	381066.0	Mm.441097	NM_001002008	ENSMUSG00000067931	Zfp948	-	zinc finger protein 948	protein-coding	1.65273366075813	1.35489557392653	2.6607032831037	2.18124325858189	2.81469517562242	2.04240652598454	2.6818828757729	2.06257035219352	0.871284763176054	0.351549309573547	0.851869250625437
Merged-chr11-83603641-3	chr11	83603525	83603725	+	933.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_036453, intron 2 of 8)	MLT1G|LTR|ERVL-MaLR	-10538.0	NM_009139	20305.0	Mm.137	NM_009139	ENSMUSG00000018927	Ccl6	MRP-1|Scya6|c10	chemokine (C-C motif) ligand 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-25293084-3	chr2	25292961	25293161	+	816.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008169, intron 19 of 19)	intron (NM_008169, intron 19 of 19)	1841.0	NM_001242940	320354.0	Mm.445875	NM_001242940		Grin1os	E130003G02Rik	glutamate receptor, ionotropic, NMDA1 (zeta 1), opposite strand	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-27870882-2	chr4	27870782	27870982	+	834.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1VL4|LINE|L1	-942249.0	NM_001290434	13841.0	Mm.257266	NM_010141	ENSMUSG00000028289	Epha7	Cek11|Ebk|Ehk3|Hek11|Mdk1	Eph receptor A7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-10326762-4	chr17	10326662	10326862	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045461, intron 2 of 2)	intron (NR_045461, intron 2 of 2)	2160.0	NR_045461	76634.0	Mm.491052	NR_045461	ENSMUSG00000099384	1700110C19Rik	-	RIKEN cDNA 1700110C19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-90515038-2	chr7	90514938	90515138	+	720.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39043.0	NM_026734	68472.0	Mm.289791	NM_026734	ENSMUSG00000030614	Tmem126b	1110001A23Rik	transmembrane protein 126B	protein-coding	-0.294083384950798	-0.277963382818132	0.430175288204581	-0.287290034214969	-0.293070061983337	-0.276782190008417	0.44311158986884	-0.286577643912737	0.0410571026119648	0.987250810110592	1
Merged-chr11-76998207-1	chr11	76998107	76998307	+	557.0	f1_balb.idr	promoter-TSS (NM_010484)	promoter-TSS (NM_010484)	-390.0	NM_010484	15567.0	Mm.300318	NM_010484	ENSMUSG00000020838	Slc6a4	5-HTT|AI323329|Htt|Sert	solute carrier family 6 (neurotransmitter transporter, serotonin), member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30395904-2	chr7	30395804	30396004	+	542.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1H1|LTR|ERVL-MaLR	-17884.0	NM_011662	22177.0	Mm.46301	NM_011662	ENSMUSG00000030579	Tyrobp	DAP12|KARAP|Ly83	TYRO protein tyrosine kinase binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97540336-4	chr11	97540236	97540436	+	743.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018873, intron 4 of 19)	intron (NM_018873, intron 4 of 19)	34790.0	NM_018873	56013.0	Mm.342665	NM_018873	ENSMUSG00000038453	Srcin1	P140|SNIP|mKIAA1684|p140Cap	SRC kinase signaling inhibitor 1	protein-coding	2.58883738554064	2.54911450676394	1.30925014643383	2.16988936974305	2.61064062413545	2.56841601549713	1.31667463212166	2.1812882465134	0.0380637431387435	0.969611481432597	0.998431161219273
Merged-chr17-36042836-4	chr17	36042718	36042918	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347382)	promoter-TSS (NM_001347382)	-76.0	NM_001359756	15039.0	Mm.195061	NM_010396	ENSMUSG00000056116	H2-T22	27b|H-2T17|H-2T22|H2-T17|T22b	histocompatibility 2, T region locus 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117796259-2	chr10	117796159	117796359	+	634.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3554.0	NM_134010	103468.0	Mm.12568	NM_134010	ENSMUSG00000052798	Nup107	AW541137|C76801	nucleoporin 107	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-45941883-4	chr4	45941775	45941975	+	861.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_198660, exon 32 of 38)	exon (NM_198660, exon 32 of 38)	-23460.0	NM_001290475	100121.0	Mm.275413	NM_146142	ENSMUSG00000035517	Tdrd7	5730495N10Rik|AI447470|PCTAIRE2BP	tudor domain containing 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-21081279-4	chr11	21081180	21081380	+	993.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA5|LINE|L1	-10044.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-52630244-2	chr1	52630144	52630344	+	663.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001142647)	promoter-TSS (NM_001142647)	-461.0	NR_024590	227094.0	Mm.83541	NM_172654	ENSMUSG00000043015	Nemp2	5330401P04Rik|9830163O08|Tmem194b	nuclear envelope integral membrane protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-135323573-4	chr6	135323445	135323645	+	934.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13161.0	NM_029595	76400.0	Mm.293018	NM_029595	ENSMUSG00000047104	Pbp2	1700023A18Rik|AI326308|Pebp-2|Pebp2	phosphatidylethanolamine binding protein 2	protein-coding	2.438828242491	2.8886711622749	4.08055484674972	3.20297403482516	2.21540933811203	1.38871598279828	2.43041587413275	1.28970004828192	-2.62104516735109	0.0025182975639125	0.0398477467696619
Merged-chr5-65120089-4	chr5	65119963	65120163	+	967.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347355, intron 1 of 10)	ORR1D2|LTR|ERVL-MaLR	-11168.0	NM_001359401	71778.0	Mm.10281	NM_175174	ENSMUSG00000054920	Klhl5	1300013C10Rik	kelch-like 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-53370148-4	chr6	53370036	53370236	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001327821, intron 2 of 10)	intron (NM_001327821, intron 2 of 10)	82833.0	NM_001327821	231991.0	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-64050668-4	chr14	64050583	64050783	+	906.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34727.0	NM_001081063	71037.0	Mm.19977	NM_001081063	ENSMUSG00000034623	Prss55	4933401F05Rik	protease, serine 55	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128703397-2	chr10	128703297	128703497	+	795.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_183417, intron 3 of 7)	B1_Mus1|SINE|Alu	1654.0	NM_183417	12566.0	Mm.111326	NM_016756	ENSMUSG00000025358	Cdk2	A630093N05Rik	cyclin-dependent kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-41016367-4	chr8	41016292	41016492	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005863, intron 6 of 13)	intron (NM_001005863, intron 6 of 13)	-1076.0	NR_015457	78849.0	Mm.440930	NR_015457	ENSMUSG00000084960	B430010I23Rik	-	RIKEN cDNA B430010I23 gene	ncRNA	5.76972190159231	5.31737163203202	6.0389696581806	5.87033729118294	4.57190147639818	4.06509273364708	4.29997024894492	4.40586714096728	-1.66751297593018	1.58468364796539e-07	1.30823631249694e-05
Merged-chr1-58450575-2	chr1	58450475	58450675	+	709.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_022988, intron 3 of 6)	intron (NM_022988, intron 3 of 6)	-5089.0	NM_027351	70225.0	Mm.340195	NM_027351	ENSMUSG00000026035	Ppil3	2310076N22Rik|2510026K04Rik|Cyp10l	peptidylprolyl isomerase (cyclophilin)-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-93266322-4	chr5	93266232	93266432	+	943.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1241.0	NM_007635	12452.0	Mm.3527	NM_007635	ENSMUSG00000029385	Ccng2	-	cyclin G2	protein-coding	4.21055273786009	4.78677716947774	4.81290426958779	4.76958405649682	4.19452025956138	4.72182540937856	4.7627635609393	4.44672958367447	-0.147417073495912	0.691132933825639	0.996768576110068
Merged-chr1-37544066-2	chr1	37543966	37544166	+	728.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-3050.0	NM_173870	269181.0	Mm.25861	NM_173870	ENSMUSG00000026110	Mgat4a	9530018I07Rik|GnT-IVa|glcNAc-T-IVa	mannoside acetylglucosaminyltransferase 4, isoenzyme A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-6370802-4	chr4	6370712	6370912	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001098227, intron 1 of 8)	intron (NM_001098227, intron 1 of 8)	5132.0	NM_001098227	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-85081018-3	chr8	85080932	85081132	+	904.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026399)	promoter-TSS (NM_026399)	69.0	NM_001001493	414077.0	Mm.35790	NM_001001493	ENSMUSG00000059355	Wdr83os	-	WD repeat domain 83 opposite strand	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64290100-4	chr5	64289974	64290174	+	982.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 11 of 18)	intron (NM_001289514, intron 11 of 18)	59717.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-165706387-4	chr1	165706330	165706530	+	758.275024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038846, intron 1 of 5)	intron (NM_001038846, intron 1 of 5)	1664.0	NM_001038846	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-90018832-2	chr18	90018732	90018932	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-249696.0	NM_001039173	623279.0	Mm.447164	NM_001039173	ENSMUSG00000073514	Dok6	Dok-6	docking protein 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-93128077-4	chr5	93127970	93128170	+	982.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001009818, intron 1 of 9)	intron (NM_001009818, intron 1 of 9)	34654.0	NM_001347377	52398.0	Mm.394184	NM_001009818	ENSMUSG00000058013	Sept11	6230410I01Rik|AW548875|D5Ertd606e	septin 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-115329341-4	chr10	115329261	115329461	+	925.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13770.0	NM_024454	216344.0	Mm.21936	NM_024454	ENSMUSG00000020132	Rab21	9630024B22	RAB21, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-93370521-4	chr10	93370431	93370631	+	851.8916630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34320.0	NR_038014	432488.0	Mm.32833	NR_038014		Gm17745	Gm3546	predicted gene, 17745	ncRNA	3.20929337295109	3.19666130293959	2.95178368217531	2.56375502431818	3.66701577217537	4.84086509808792	3.52257857805666	4.43043669459664	1.784602084135	0.0013672971646411	0.025135083832529
Merged-chr6-91683420-4	chr6	91683322	91683522	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009320)	promoter-TSS (NM_009320)	-645.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-82781077-4	chr6	82780963	82781163	+	914.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6609.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-94812896-6	chr8	94812733	94812933	+	894.805542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011332)	TTS (NM_011332)	2380.0	NM_011332	20295.0	Mm.41988	NM_011332	ENSMUSG00000031780	Ccl17	Abcd-2|Scya17|Scya17l|Tarc	chemokine (C-C motif) ligand 17	protein-coding	1.96544173264952	1.92195571432909	1.85866451180494	2.37525117772771	1.5821195677962	1.28318865774756	2.63411870552291	2.3877773897011	0.140297218627758	0.887941867698966	0.998431161219273
Merged-chr19-44397989-3	chr19	44397904	44398104	+	913.43335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009127, exon 6 of 6)	exon (NM_009127, exon 6 of 6)	9705.0	NM_009127	20249.0	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-28548864-2	chr2	28548764	28548964	+	650.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145836, intron 14 of 17)	MIRc|SINE|MIR	14539.0	NM_009885	12613.0	Mm.236017	NM_009885	ENSMUSG00000026818	Cel	1810036E18Rik|BAL	carboxyl ester lipase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-178391617-3	chr1	178391547	178391747	+	724.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14371.0	NM_026626	68226.0	Mm.252132	NM_026626	ENSMUSG00000026495	Efcab2	1700073K01Rik|D830011E08Rik	EF-hand calcium binding domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-58979462-2	chr11	58979360	58979560	+	921.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_053168, intron 1 of 5)	intron (NM_053168, intron 1 of 5)	1367.0	NM_053168	94091.0	Mm.248049	NM_053168	ENSMUSG00000020455	Trim11	-	tripartite motif-containing 11	protein-coding	-0.632521303970617	-0.14800607626145	-0.770314390260414	-0.772809998915306	-0.776332349469994	-0.76633053588726	-0.586685410778265	-0.772374199308727	-2.16149872723712	0.431822386057471	1
Merged-chr5-129501877-4	chr5	129501785	129501985	+	713.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359952, intron 1 of 17)	CpG	654.0	NM_172276	231769.0	Mm.288714	NM_172276	ENSMUSG00000029439	Sfswap	1190005N23Rik|6330437E22Rik|AI197402|AW212079|SWAP|Sfrs8|Srsf8	splicing factor SWAP	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-3722660-2	chr16	3722560	3722760	+	545.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4536.0	NM_001161791	54483.0	Mm.143718	NM_019453	ENSMUSG00000022534	Mefv	FMF|TRIM20|pyrin	Mediterranean fever	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-23571817-4	chr13	23571724	23571924	+	977.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178187)	promoter-TSS (NM_178187)	424.0	NM_178196	319181.0	Mm.261673	NM_178196	ENSMUSG00000058385	Hist1h2bg	-	histone cluster 1, H2bg	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-83256478-2	chr15	83256378	83256578	+	641.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4704.0	NM_001004150	239559.0	Mm.323805	NM_001004150	ENSMUSG00000047878	A4galt	-	alpha 1,4-galactosyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-56865765-3	chr8	56865680	56865880	+	923.1333619999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	314646.0	NM_015791	50753.0	Mm.251174	NM_015791	ENSMUSG00000038206	Fbxo8	Fbx8	F-box protein 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5493511-4	chr17	5493371	5493571	+	972.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_146073, exon 1 of 9)	exon (NM_146073, exon 1 of 9)	871.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-18871845-1	chr11	18871745	18871945	+	724.0	f0_balb.idr	Intergenic	CpG	147124.0	NM_001193271	17268.0	Mm.356578	NM_010789	ENSMUSG00000020160	Meis1	C530044H18Rik|Evi8	Meis homeobox 1	protein-coding	0.188741682120164	0.687826777862109	0.200863067058962	0.612029411085987	0.74787416894846	0.560269690719846	0.202167495991637	0.197099208835853	0.0506181163499071	0.979719448227078	1
Merged-chr15-25550471-4	chr15	25550376	25550576	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72074.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-122986258-4	chr10	122986164	122986364	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029527)	promoter-TSS (NR_029527)	-540.0	NR_029527	387251.0		NR_029527	ENSMUSG00000065406	Mirlet7i	Mirnlet7i|let-7i|mmu-let-7i	microRNA let7i	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-125673042-4	chr2	125672945	125673145	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025613)	promoter-TSS (NM_025613)	-55.0	NM_025613	58521.0	Mm.425101	NM_025613	ENSMUSG00000091337	Eid1	2610002K20Rik|Cri1|EID-1|ORF12|PNAS-22|PTD014	EP300 interacting inhibitor of differentiation 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-107347593-4	chr4	107347485	107347685	+	950.839294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205156, intron 7 of 8)	intron (NM_001205156, intron 7 of 8)	-20199.0	NM_028355	72787.0	Mm.28478	NM_028355	ENSMUSG00000028614	Ndc1	2810475A17Rik|AI450313|Tmem48|sks	NDC1 transmembrane nucleoporin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167219562-4	chr2	167219490	167219690	+	649.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008968, intron 5 of 9)	intron (NM_008968, intron 5 of 9)	20947.0	NM_008968	19223.0	Mm.2339	NM_008968	ENSMUSG00000017969	Ptgis	Cyp8|Cyp8a1|Pgis	prostaglandin I2 (prostacyclin) synthase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141209660-2	chr7	141209560	141209760	+	794.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_028050)	TTS (NM_028050)	4420.0	NM_001347565	72000.0	Mm.334314	NM_028050	ENSMUSG00000025500	Lmntd2	1600016N20Rik	lamin tail domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106156410-1	chr11	106156310	106156510	+	544.0	f1_balb.idr	TTS (NM_011947)	TTS (NM_011947)	3517.0	NM_001356459	67803.0	Mm.21687	NM_172397	ENSMUSG00000040699	Limd2	0610025L06Rik|AI413966	LIM domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-75519383-2	chr10	75519283	75519483	+	607.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_026095, exon 2 of 4)	exon (NM_026095, exon 2 of 4)	1341.0	NM_026095	67332.0	Mm.45151	NM_026095	ENSMUSG00000020180	Snrpd3	1700043E15Rik|2310009E13Rik|AW046420|SMD3	small nuclear ribonucleoprotein D3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97389758-2	chr6	97389649	97389849	+	620.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 6 of 23)	intron (NM_145148, intron 6 of 23)	69537.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0.594029959017055	1.08865729865248	1.9860764392684	0.407591589827299	0.390022851455348	1.2548562052573	0.423036943258747	0.409719100566143	-1.95195941099619	0.245777341609216	0.74520645449897
Merged-chr17-27827166-4	chr17	27827063	27827263	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6621.0	NM_001271511	224647.0	Mm.196577	NM_001033279	ENSMUSG00000056692	D17Wsu92e	AU020189|C030010A15|C80239	DNA segment, Chr 17, Wayne State University 92, expressed	protein-coding	4.96047670854433	4.98804707472878	4.71048068789897	4.29010439062675	4.71584171056319	4.84499082547553	4.87239517104785	4.31145836959952	-0.0786863513915754	0.825983003710224	0.998431161219273
Merged-chr11-117721953-4	chr11	117721855	117722055	+	839.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_198022, exon 5 of 22)	exon (NM_198022, exon 5 of 22)	57693.0	NR_154387	217353.0	Mm.286963	NM_145439	ENSMUSG00000025572	Tmc6	D11Ertd204e|EVER1	transmembrane channel-like gene family 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153401933-2	chr2	153401833	153402033	+	613.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001039939, exon 12 of 12)	exon (NM_001039939, exon 12 of 12)	42546.0	NM_001001986	329540.0	Mm.50600	NM_001001986	ENSMUSG00000061411	Nol4l	4931410H15|8430427H17Rik|AI429157|Gm1636	nucleolar protein 4-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88939955-4	chr3	88939861	88940061	+	829.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164533, intron 2 of 11)	B3|SINE|B2	10321.0	NM_022994	65111.0	Mm.29028	NM_022994	ENSMUSG00000068921	Dap3	4921514D13Rik|DAP-3|MRP-S29|S29mt	death associated protein 3	protein-coding	-1.16350955238416	-1.14290845363777	-0.987150054557296	-1.16068794130186	-1.02214571241574	-0.804672974317597	-1.15121460612225	-1.16038971206676	1.43123820427758	0.638210493538296	1
Merged-chr9-7570499-3	chr9	7570452	7570652	+	606.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310717)	promoter-TSS (NM_001310717)	-844.0	NM_001310717	234911.0	Mm.334940	NM_001030289	ENSMUSG00000070323	Mmp27	Gm180	matrix metallopeptidase 27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-132713155-2	chr7	132713055	132713255	+	693.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_175268, exon 5 of 5)	3' UTR (NM_175268, exon 5 of 5)	63761.0	NM_001347630	77938.0	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117724715-4	chr11	117724607	117724807	+	997.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198022, intron 5 of 21)	intron (NM_198022, intron 5 of 21)	54941.0	NR_154387	217353.0	Mm.286963	NM_145439	ENSMUSG00000025572	Tmc6	D11Ertd204e|EVER1	transmembrane channel-like gene family 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-83753245-2	chr12	83753145	83753345	+	616.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10389.0	NM_001205343	170721.0	Mm.133443	NM_130887	ENSMUSG00000021223	Papln	E030033C16Rik	papilin, proteoglycan-like sulfated glycoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-112767742-3	chr13	112767675	112767875	+	738.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33002.0	NM_008903	19012.0	Mm.291029	NM_008247	ENSMUSG00000021759	Plpp1	Hic53|Hpic53|LPP-1|LPP1|PAP-2a|PAP2-alpha|PAP2a|Ppap2a|mPAP	phospholipid phosphatase 1	protein-coding	-1.84354474832578	-1.81325489144778	-1.53416061964661	-1.82993901100912	-1.8414184563789	-1.81126990231468	-1.82034119297928	-1.82859217979378	-1.52252619601533	0.665276690233728	1
Merged-chr19-61244897-4	chr19	61244794	61244994	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16476.0	NM_009970	12982.0	Mm.287228	NM_009970	ENSMUSG00000059326	Csf2ra	CD116|Csfgmra|GM-CSF-Ra|GM-CSFR	colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128134524-2	chr10	128134424	128134624	+	557.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039080, intron 11 of 13)	intron (NM_001039080, intron 11 of 13)	41741.0	NM_054078	116848.0	Mm.252213	NM_054078	ENSMUSG00000040054	Baz2a	AA415431|C030005G16Rik|C78388|Tip5|Walp3|mKIAA0314	bromodomain adjacent to zinc finger domain, 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-34168526-4	chr7	34168419	34168619	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016682)	promoter-TSS (NM_016682)	10.0	NM_016682	50995.0	Mm.27560	NM_016682	ENSMUSG00000052997	Uba2	AA986091|Arx|Sae2|UBA1|Ubl1a2|Uble1b	ubiquitin-like modifier activating enzyme 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-32430655-1	chr9	32430555	32430755	+	546.0	f1_c57bl6.idr	intron (NM_008026, intron 5 of 8)	intron (NM_008026, intron 5 of 8)	36670.0	NM_001168354	56379.0	Mm.390168	NM_019659	ENSMUSG00000041248	Kcnj1	Kir1.1|ROMK|Romk2	potassium inwardly-rectifying channel, subfamily J, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6238435-2	chr19	6238335	6238535	+	883.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-2595.0	NM_198168	225849.0	Mm.118076	NM_198168	ENSMUSG00000024777	Ppp2r5b	B'beta|BC026670	protein phosphatase 2, regulatory subunit B', beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-63932724-2	chr17	63932624	63932824	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037997, intron 7 of 18)	Lx10|LINE|L1	-5248.0	NM_008000	14158.0	Mm.23039	NM_008000	ENSMUSG00000000127	Fer	AV082135|C330004K01Rik|Fert|Fert2	fer (fms/fps related) protein kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-74386307-1	chr11	74386207	74386407	+	574.0	f1_c57bl6.idr	3' UTR (NM_001015046, exon 25 of 25)	3' UTR (NM_001015046, exon 25 of 25)	21636.0	NM_001011851	258153.0	Mm.376124	NM_001011851	ENSMUSG00000058275	Olfr412	MOR127-5P	olfactory receptor 412	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-48694338-2	chr2	48694238	48694438	+	567.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-119771.0	NM_007396	11480.0	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-78136153-4	chr10	78136075	78136275	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33593.0	NM_138601	28295.0	Mm.268691	NM_138601	ENSMUSG00000053329	D10Jhu81e	C21orf33|ES1	DNA segment, Chr 10, Johns Hopkins University 81 expressed	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-34247577-4	chr18	34247476	34247676	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360979)	promoter-TSS (NM_001360979)	-118.0	NM_001360980	11789.0	Mm.384171	NM_007462	ENSMUSG00000005871	Apc	AI047805|AU020952|AW124434|CC1|Min|mAPC	adenomatosis polyposis coli	protein-coding	4.34678452963151	4.21671117520009	3.72292128337377	4.5157687063906	4.07593311330705	2.93849738948959	4.17338217799959	4.31706929090993	-0.341295606126078	0.471003154294709	0.92584289530549
Merged-chr2-148572353-2	chr2	148572253	148572453	+	797.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-100262.0	NM_019761	56488.0	Mm.34663	NM_019761	ENSMUSG00000036992	Nxt1	1110001N02Rik	NTF2-related export protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4728131-4	chr16	4727961	4728161	+	874.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001136066, intron 1 of 5)	intron (NM_001136066, intron 1 of 5)	1700.0	NM_001136066	15369.0	Mm.272866	NM_010443	ENSMUSG00000004070	Hmox2	HO-2|HO2	heme oxygenase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-5869990-3	chr15	5869935	5870135	+	740.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4A|LINE|L1	174669.0	NR_155428	105245876.0	Mm.128197	NR_155428		Gm41259	-	predicted gene, 41259	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-74854883-2	chr1	74854783	74854983	+	836.666687	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009872)	promoter-TSS (NM_009872)	-146.0	NM_009872	12570.0	Mm.153833	NM_009872	ENSMUSG00000090071	Cdk5r2	B230310J22Rik|p39	cyclin-dependent kinase 5, regulatory subunit 2 (p39)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-106230495-4	chr9	106230447	106230647	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7949.0	NM_031178	81897.0	Mm.44889	NM_031178	ENSMUSG00000045322	Tlr9	-	toll-like receptor 9	protein-coding	5.40549686010017	5.74370721443006	5.6854339821148	5.551404962516	5.51139753381085	6.05060592273167	5.81959645587304	5.92727131996025	0.266518438469696	0.293380628369519	0.797649214211793
Merged-chr6-34346787-4	chr6	34346682	34346882	+	895.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7364.0	NM_008012	14187.0	Mm.5378	NM_008012	ENSMUSG00000029762	Akr1b8	FR-1|Fgfrp|Fgrp	aldo-keto reductase family 1, member B8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-14277249-2	chr9	14277149	14277349	+	583.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030261, intron 1 of 9)	intron (NM_030261, intron 1 of 9)	948.0	NM_030261	75747.0	Mm.325126	NM_030261	ENSMUSG00000032009	Sesn3	5630400E15Rik|BC003348|SEST3	sestrin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-15194562-4	chr3	15194471	15194671	+	927.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	137731.0	NM_001076679	751864.0	Mm.431296	NM_001076679	ENSMUSG00000078783	Gm9733	-	predicted gene 9733	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-82987949-4	chr15	82987843	82988043	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28647.0	NR_037241	100526477.0		NR_037241	ENSMUSG00000092751	Mir3080	mmu-mir-3080	microRNA 3080	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-79206797-2	chr11	79206697	79206897	+	640.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	36227.0	NM_001042565	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-5213623-4	chr5	5213526	5213726	+	909.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011074, intron 4 of 14)	intron (NM_011074, intron 4 of 14)	52442.0	NM_001310448	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-31132303-4	chr7	31132221	31132421	+	914.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153431, intron 18 of 18)	intron (NR_153431, intron 18 of 18)	-5298.0	NM_011322	20266.0	Mm.1418	NM_011322	ENSMUSG00000019194	Scn1b	-	sodium channel, voltage-gated, type I, beta	protein-coding	3.66549840018841	3.8907909892266	2.89249793142938	2.63926549908459	4.52824473053391	4.49705167306037	5.13724560500893	3.81714268091781	1.64039142291468	0.00142372370870355	0.0259865675309715
Merged-chr4-86668342-3	chr4	86668239	86668439	+	843.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007408, intron 3 of 7)	intron (NM_007408, intron 3 of 7)	1720.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-25980422-4	chr8	25980304	25980504	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_029037)	TTS (NM_029037)	-3660.0	NM_029884	52120.0	Mm.28326	NM_029884	ENSMUSG00000037260	Hgsnat	9430010M12Rik|AW208455|D8Ertd354e|Tmem76	heparan-alpha-glucosaminide N-acetyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-143915425-4	chr2	143915313	143915513	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019771)	promoter-TSS (NM_019771)	82.0	NM_019771	56431.0	Mm.28919	NM_019771	ENSMUSG00000015932	Dstn	2610043P17Rik|ADF|AU042046|Dsn|corn1|sid23p	destrin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-83535729-2	chr9	83535629	83535829	+	705.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-12609.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45123936-2	chr7	45123836	45124036	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_000004)	promoter-TSS (NR_000004)	453.0	NM_013725	27207.0	Mm.196538	NM_013725	ENSMUSG00000003429	Rps11	-	ribosomal protein S11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-105024242-2	chr3	105024142	105024342	+	619.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030249, intron 3 of 5)	intron (NM_030249, intron 3 of 5)	28711.0	NM_001163332	80281.0	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133132257-4	chr4	133132170	133132370	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153423, intron 1 of 8)	intron (NM_153423, intron 1 of 8)	1637.0	NM_153423	242687.0	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-121992156-1	chr14	121992056	121992256	+	747.0	f1_c57bl6.idr	intron (NM_026861, intron 6 of 8)	intron (NM_026861, intron 6 of 8)	-26963.0	NM_183031	321019.0	Mm.265618	NM_183031	ENSMUSG00000051212	Gpr183	Ebi2	G protein-coupled receptor 183	protein-coding	1.62506541170268	2.69456513492011	3.92269049285548	2.51155921142613	1.14324216622496	2.93791474090137	2.61636713759706	1.21160731127502	-1.34264453703326	0.178424228293458	0.648969449595264
Merged-chr4-85186181-2	chr4	85186081	85186281	+	591.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	-19275.0	NM_019535	20404.0	Mm.143603	NM_019535	ENSMUSG00000028488	Sh3gl2	9530001L19Rik|AI120490|AW555077|B930049H17Rik|EEN-B1|SH3PA|Sh3d2a	SH3-domain GRB2-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33130920-4	chr16	33130817	33131017	+	913.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	25556.0	NR_035469	100316698.0		NR_035469	ENSMUSG00000088860	Mir1947	mir-1947|mmu-mir-1947	microRNA 1947	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-40997783-4	chr4	40997686	40997886	+	908.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290448, intron 10 of 15)	intron (NM_001290448, intron 10 of 15)	4091.0	NR_037277	100526501.0		NR_037277	ENSMUSG00000092862	Mir3094	mir-3094|mmu-mir-3094	microRNA 3094	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-44127694-3	chr5	44127578	44127778	+	749.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25942.0	NM_001163577	19126.0	Mm.6250	NM_008935	ENSMUSG00000029086	Prom1	4932416E19Rik|AC133|CD133|Prom|Prom-1|Proml1	prominin 1	protein-coding	1.76700179647695	2.72020065032395	1.91769693084095	2.14204993376071	1.92190692776192	1.3103509581163	2.08821457887673	3.04058280870411	0.169988653703734	0.860953271802025	0.998431161219273
Merged-chr19-8716569-2	chr19	8716469	8716669	+	719.400024	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161413, intron 1 of 9)	ID_B1|SINE|B4	-2672.0	NM_008577	17254.0	Mm.4114	NM_008577	ENSMUSG00000010095	Slc3a2	4F2|4F2HC|AI314110|Cd98|Ly-10|Ly-m10|Ly10|Mdu1|Mgp-2hc|NACAE	solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131659728-4	chr1	131659624	131659824	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007799, intron 1 of 9)	intron (NM_007799, intron 1 of 9)	21410.0	NM_007799	13034.0	Mm.230249	NM_007799	ENSMUSG00000004552	Ctse	A430072O03Rik|C920004C08Rik|CE|CatE	cathepsin E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-59615919-2	chr10	59615819	59616019	+	929.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033259, intron 1 of 7)	intron (NM_001033259, intron 1 of 7)	773.0	NM_001033259	215999.0	Mm.296470	NM_001033259	ENSMUSG00000009647	Mcu	2010012O16Rik|AV064928|C10orf42|Ccdc109a|D130073L02Rik|Gm64	mitochondrial calcium uniporter	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35438054-2	chr17	35437954	35438154	+	661.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER44A|DNA|TcMar-Tigger	-1101.0	NM_010394	15018.0	Mm.431282	NM_010394	ENSMUSG00000060550	H2-Q7	H-2Q7|Ped|Q9|Qa-2|Qa-7|Qa7	histocompatibility 2, Q region locus 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-9002209-4	chr12	9002104	9002304	+	957.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172470, intron 12 of 27)	intron (NM_172470, intron 12 of 27)	-27793.0	NM_029321	75516.0	Mm.37581	NM_029321	ENSMUSG00000066637	Ttc32	1700013G20Rik	tetratricopeptide repeat domain 32	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-68443490-4	chr11	68443419	68443619	+	990.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177320, intron 1 of 18)	intron (NM_177320, intron 1 of 18)	11394.0	NM_177320	320207.0	Mm.244960	NM_177320	ENSMUSG00000020901	Pik3r5	AV230647|F730038I15Rik|Foap2|p101	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-8522336-2	chr12	8522236	8522436	+	998.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TC)n|Simple_repeat|Simple_repeat	17230.0	NM_001038660	328059.0	Mm.46326	NM_177802	ENSMUSG00000020600	Slc7a15	Arpat	solute carrier family 7 (cationic amino acid transporter, y+ system), member 15	protein-coding	-0.309808269503269	-0.0994228054320772	-0.120495542909668	-0.136873182399215	-0.308940016561582	-0.294882266236118	0.482602085615854	-0.303359334913785	1.03980166293513	0.652334721146934	1
Merged-chr11-47392050-2	chr11	47391950	47392150	+	677.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-12748.0	NM_011891	24052.0	Mm.338890	NM_011891	ENSMUSG00000020354	Sgcd	35kDa|delta-SG	sarcoglycan, delta (dystrophin-associated glycoprotein)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-75368090-2	chr18	75367990	75368190	+	982.5	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001042660, exon 1 of 4)	5' UTR (NM_001042660, exon 1 of 4)	725.0	NM_001042660	17131.0	Mm.34407	NM_008543	ENSMUSG00000025880	Smad7	Madh7	SMAD family member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-111536045-2	chr8	111535945	111536145	+	733.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001168621)	promoter-TSS (NM_001168621)	-595.0	NM_001168622	170737.0	Mm.271578	NM_133206	ENSMUSG00000033545	Znrf1	B830022L21Rik|Rnf42|Zrfp1|nin283	zinc and ring finger 1	protein-coding	0.456467854716069	0.690423852877605	0.525247685168374	0.21038165513981	0.462946242034948	0.699744340768487	0.215972190879632	0.21114027485115	-0.46023897885592	0.804703269162153	1
Merged-chr19-4204140-4	chr19	4204043	4204243	+	909.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2540.0	NM_011237	19367.0	Mm.277629	NM_011237	ENSMUSG00000024824	Rad9a	Rad9	RAD9 checkpoint clamp component A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-110593405-2	chr12	110593305	110593505	+	637.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_033340)	TTS (NR_033340)	2031.0	NR_033340	319786.0	Mm.129691	NR_033340		B930059L03Rik	-	RIKEN cDNA B930059L03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-102515165-4	chr4	102515050	102515250	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019840, intron 5 of 14)	intron (NM_019840, intron 5 of 14)	-54910.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	4.29359678581356	4.02590582516495	3.89336862516631	4.28923153823113	4.3638582216258	3.64059628262098	1.85139525641487	4.30953053631402	-0.392957202444845	0.499861130350153	0.938059363548374
Merged-chr10-127655468-4	chr10	127655379	127655579	+	687.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009284, exon 13 of 22)	exon (NM_009284, exon 13 of 22)	11224.0	NM_001122895	17937.0	Mm.336898	NM_008668	ENSMUSG00000025402	Nab2	AI451907	Ngfi-A binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-18275085-2	chr14	18274985	18275185	+	751.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001316712, intron 1 of 3)	MT2B|LTR|ERVL	3949.0	NM_023526	69721.0	Mm.25648	NM_023526	ENSMUSG00000021772	Nkiras1	2400004O09Rik|KBRAS1|kappaB-Ras1	NFKB inhibitor interacting Ras-like protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-70833655-4	chr17	70833592	70833792	+	875.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13085.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-117483134-2	chr12	117483034	117483234	+	830.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33345.0	NM_175930	217944.0	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-6680136-7	chr11	6680120	6680320	+	878.9761960000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-19984.0	NR_028586	100041311.0	Mm.388018	NR_028586	ENSMUSG00000086373	Gm11978	-	predicted gene 11978	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-57421416-4	chr9	57421300	57421500	+	979.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152145, intron 3 of 6)	intron (NR_152145, intron 3 of 6)	18336.0	NM_001357913	66812.0	Mm.250508	NM_176831	ENSMUSG00000063849	Ppcdc	1810057I13Rik|8430432M10Rik	phosphopantothenoylcysteine decarboxylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-127788910-4	chr2	127788809	127789009	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016902)	promoter-TSS (NM_016902)	-18.0	NM_001355429	53885.0	Mm.210766	NM_016902	ENSMUSG00000027378	Nphp1	-	nephronophthisis 1 (juvenile) homolog (human)	protein-coding	-0.0279870593701375	-0.000679791491428244	-0.00945942998696628	-0.0163413402881421	-0.0262365263976776	0.00127823869219698	1.1025344340423	0.950247548792454	4.41271664005957	0.0430882765009812	1
Merged-chr2-6469369-4	chr2	6469247	6469447	+	994.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	116611.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83053427-2	chr6	83053327	83053527	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_013586)	TTS (NM_013586)	-1094.0	NM_007517	11993.0	Mm.386752	NM_007517	ENSMUSG00000068328	Aup1	AA589454	ancient ubiquitous protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-6384731-4	chr4	6384647	6384847	+	997.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016807, intron 4 of 8)	intron (NM_016807, intron 4 of 8)	19067.0	NM_001098227	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80900574-2	chr7	80900474	80900674	+	769.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_152101, intron 2 of 6)	intron (NR_152101, intron 2 of 6)	695.0	NR_152101	71968.0	Mm.274226	NM_028026	ENSMUSG00000025722	Wdr73	1200011I23Rik|2410008B13Rik|AI848574|C85352	WD repeat domain 73	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122550979-2	chr8	122550879	122551079	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001357349, exon 1 of 51)	exon (NM_001357349, exon 1 of 51)	350.0	NM_001037298	234839.0	Mm.37324	NM_001037298	ENSMUSG00000014444	Piezo1	9630020g22|Fam38a|mKIAA0233	piezo-type mechanosensitive ion channel component 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-117357023-8	chr5	117356919	117357119	+	997.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021539)	promoter-TSS (NM_021539)	-286.0	NM_021539	59043.0	Mm.28489	NM_021539	ENSMUSG00000029364	Wsb2	AA673511|Swip2|WSB-2	WD repeat and SOCS box-containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-34820373-2	chr8	34820227	34820427	+	636.75	f1_balb.idr|f1_c57bl6.idr	TTS (NM_176933)	TTS (NM_176933)	12717.0	NM_176933	319520.0	Mm.170276	NM_176933	ENSMUSG00000031530	Dusp4	2700078F24Rik|AI844617|BB104621|E130306H24Rik|MKP2	dual specificity phosphatase 4	protein-coding	-1.26687315729308	-1.51144556179868	-1.52074032698608	-1.52837532385482	-1.39377469321613	-1.50943134740853	-1.5186361958831	-1.52700866306571	-0.563662181339258	0.873093626595385	1
Merged-chr9-105057997-2	chr9	105057897	105058097	+	800.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_053159, intron 4 of 9)	RMER15|LTR|ERVL	4729.0	NM_053159	94062.0	Mm.29746	NM_053159	ENSMUSG00000032563	Mrpl3	2010320L16Rik|5930422H18Rik|AA407889	mitochondrial ribosomal protein L3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-132096027-4	chr2	132095924	132096124	+	946.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355431, intron 2 of 6)	Lx8|LINE|L1	49084.0	NM_001355431	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-73725594-2	chr13	73725494	73725694	+	634.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6A|LTR|ERVK	-24814.0	NM_028878	74338.0	Mm.271635	NM_028878	ENSMUSG00000021565	Slc6a19	4632401C08Rik|B<0>AT1	solute carrier family 6 (neurotransmitter transporter), member 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-95573234-2	chr1	95573134	95573334	+	568.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	94360.0	NM_009183	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-109547905-3	chr13	109547810	109548010	+	967.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011056, intron 3 of 16)	Lx6|LINE|L1	223166.0	NR_030644	100124489.0		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-60705136-1	chr13	60705036	60705236	+	815.5	f1_c57bl6.idr	intron (NM_134062, intron 3 of 26)	intron (NM_134062, intron 3 of 26)	81228.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	-2.18375600819439	-2.15556918946382	-2.16409311609999	-2.17109492323169	-2.18177734563694	-2.01960173909294	-2.16216348594872	-2.16984160310277	0.759018020146679	0.829933115115583	1
Merged-chr7-105744386-4	chr7	105744276	105744476	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020024)	promoter-TSS (NM_020024)	-38.0	NM_020024	24075.0	Mm.274846	NM_020024	ENSMUSG00000043866	Taf10	30kDa|AU041226|TAFII30|Taf2h	TATA-box binding protein associated factor 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96500489-4	chr3	96500374	96500574	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24711.0	NM_027126	69585.0	Mm.171314	NM_027126	ENSMUSG00000038403	Hfe2	2310035L15Rik|5230400G09Rik|AI414844|AI789733|DL-M|HJV|Rgmc|hemojuvelin	hemochromatosis type 2 (juvenile)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53232591-1	chr4	53232491	53232691	+	742.0	f0_balb.idr	Intergenic	Intergenic	-13605.0	NR_040665	78180.0	Mm.243847	NR_040665	ENSMUSG00000086947	4930522O17Rik	-	RIKEN cDNA 4930522O17 gene	ncRNA	-0.872916097538603	-0.858076750212072	0.212271930224195	-0.866682797913291	-0.871978848638189	-0.856861994422903	-0.861959313721536	-0.866035833892092	-3.81964142728853	0.171121984527918	1
Merged-chr17-38634051-1	chr17	38633951	38634151	+	705.0	f1_c57bl6.idr	Intergenic	MMERVK10C-int|LTR|ERVK	-5396.0	NM_001177586	100126768.0	Mm.471528	NM_001177586	ENSMUSG00000092342	Esp31	Gm20516	exocrine gland secreted peptide 31	protein-coding	-1.50811478453619	-0.99851579554048	-1.48484165847197	-1.49312904261012	-1.50577282675516	-1.47256636097272	-1.48255773576353	-1.49164560481169	-2.24133836997777	0.518237887813808	1
Merged-chr17-32114238-2	chr17	32114138	32114338	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22815.0	NR_027316	435518.0	Mm.328944	NR_027316	ENSMUSG00000002791	Pdxk-ps	Gm9743	pyridoxal (pyridoxine, vitamin B6) kinase, pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-68171308-1	chr16	68171208	68171408	+	696.0	f1_balb.idr	Intergenic	MLTR25A|LTR|ERVK	-550400.0	NM_178721	239857.0	Mm.394300	NM_178721	ENSMUSG00000064115	Cadm2	2900078E11Rik|9330131D06|A830029E02Rik|Igdf4d|Igsf4d|NECL3|SynCAM 2|SynCAM2	cell adhesion molecule 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-12176809-4	chr12	12176697	12176897	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-85342.0	NM_029758	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-57287056-2	chr17	57286956	57287156	+	924.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163816, intron 1 of 25)	intron (NM_001163816, intron 1 of 25)	7956.0	NM_001163815	22324.0	Mm.248172	NM_011691	ENSMUSG00000034116	Vav1	Vav|vav-T	vav 1 oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-70849161-6	chr17	70849098	70849298	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164074, intron 1 of 2)	intron (NM_001164074, intron 1 of 2)	592.0	NM_001164076	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43009011-2	chr4	43008911	43009111	+	604.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_053081, intron 3 of 13)	intron (NM_053081, intron 3 of 13)	1290.0	NM_001163233	60534.0	Mm.23122	NM_053081	ENSMUSG00000028453	Fancg	AU041407|Xrcc9	Fanconi anemia, complementation group G	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-50016920-4	chr18	50016740	50016940	+	908.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177759, intron 1 of 1)	intron (NM_001177759, intron 1 of 1)	-14144.0	NM_001360935	106869.0	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-127976254-2	chr1	127976154	127976354	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_027678, exon 13 of 21)	exon (NM_027678, exon 13 of 21)	107481.0	NM_178690	226407.0	Mm.489713	NM_178690	ENSMUSG00000036104	Rab3gap1	1700003B17Rik|4732493F09Rik|AL117896|Rab3gap|p130	RAB3 GTPase activating protein subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-87025078-4	chr10	87024972	87025172	+	995.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17130.0	NM_138673	192188.0	Mm.279611	NM_138673	ENSMUSG00000035459	Stab2	FEEL-2|FELL|MFEEL-2|STAB-2	stabilin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-127611327-4	chr5	127611230	127611430	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133895, intron 1 of 7)	intron (NM_133895, intron 1 of 7)	6062.0	NM_133895	100561.0	Mm.28506	NM_133895	ENSMUSG00000029416	Slc15a4	AA987064|AW742963|C130069N12Rik|PHT1|PTR4	solute carrier family 15, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-52119391-4	chr1	52119286	52119486	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357627)	promoter-TSS (NM_001357627)	-52.0	NM_001357627	20846.0	Mm.277406	NM_009283	ENSMUSG00000026104	Stat1	2010005J02Rik|AA408197	signal transducer and activator of transcription 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-38083632-2	chr2	38083532	38083732	+	665.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146122, intron 5 of 21)	intron (NM_146122, intron 5 of 21)	203752.0	NM_146122	227801.0	Mm.314245	NM_146122	ENSMUSG00000035392	Dennd1a	6030446I19Rik|connecdenn	DENN/MADD domain containing 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-90666309-1	chr11	90666209	90666409	+	630.0	f0_balb.idr	intron (NM_028011, intron 7 of 15)	intron (NM_028011, intron 7 of 15)	-3310.0	NM_001357547	71943.0	Mm.167868	NM_028011	ENSMUSG00000020541	Tom1l1	2310045L10Rik|C80573|Srcasm	target of myb1-like 1 (chicken)	protein-coding	0.479145042564226	0.513253891384744	0.502260254265211	1.40303831806362	1.31836214036123	0.515709515847093	0.715594411966948	1.32394285823994	0.924736983230503	0.592790497716028	0.97047672040347
Merged-chr7-129995704-4	chr7	129995601	129995801	+	974.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3C|LINE|L1	33536.0	NR_046077	100043150.0	Mm.334264	NR_046077	ENSMUSG00000108504	Gm4265	-	predicted gene 4265	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127260813-4	chr7	127260706	127260906	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023203)	promoter-TSS (NM_023203)	-139.0	NM_023203	66422.0	Mm.29898	NM_023203	ENSMUSG00000042462	Dctpp1	2410015N17Rik|AI854235|RS21-C6	dCTP pyrophosphatase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105274924-2	chr8	105274824	105275024	+	614.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045689, intron 11 of 12)	intron (NR_045689, intron 11 of 12)	-1523.0	NM_030152	78688.0	Mm.475715	NM_030152	ENSMUSG00000014776	Nol3	ARC|B430311C09Rik|MYC|NOP|Nop30	nucleolar protein 3 (apoptosis repressor with CARD domain)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-98139903-2	chr15	98139803	98140003	+	712.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001170711, intron 3 of 3)	ORR1B1|LTR|ERVL-MaLR	5799.0	NM_030121	78541.0	Mm.200766	NM_030121	ENSMUSG00000048175	Asb8	4930539L19Rik|AI788835|C430011H06Rik	ankyrin repeat and SOCS box-containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95626910-2	chr3	95626810	95627010	+	785.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001026212, intron 2 of 2)	intron (NM_001026212, intron 2 of 2)	1930.0	NM_001026212	56205.0	Mm.241365	NM_019561	ENSMUSG00000038619	Ensa	1700020C18Rik|2610007F17Rik|AI451924	endosulfine alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-50779586-4	chr16	50779480	50779680	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3829.0	NR_131006	78639.0	Mm.160109	NR_131005	ENSMUSG00000092276	1700116B05Rik	-	RIKEN cDNA 1700116B05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-3381888-4	chr5	3381737	3381937	+	979.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 2 of 7)	intron (NM_009873, intron 2 of 7)	37944.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-88672145-1	chr8	88672045	88672245	+	776.0	f1_c57bl6.idr	intron (NM_145857, intron 6 of 12)	intron (NM_145857, intron 6 of 12)	24798.0	NM_145857	257632.0	Mm.222633	NM_145857	ENSMUSG00000055994	Nod2	ACUG|BLAU|CD|Card15|F830032C23Rik|IBD1|Nlrc2	nucleotide-binding oligomerization domain containing 2	protein-coding	-0.854058440729434	0.350130902370778	-0.842969446669302	-0.847090325872083	-0.853011584238196	-0.83302558815076	-0.841801670470746	-0.846366347285773	-3.66898573382433	0.203709016371174	1
Merged-chr14-25660222-4	chr14	25660139	25660339	+	872.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 22 of 23)	intron (NM_183208, intron 22 of 23)	-33931.0	NM_134084	105675.0	Mm.41656	NM_134084	ENSMUSG00000021868	Ppif	AW457192|CyP-D|CyP-F|CypD|PPIase	peptidylprolyl isomerase F (cyclophilin F)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-77609790-2	chr10	77609690	77609890	+	609.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301671, intron 1 of 3)	intron (NM_001301671, intron 1 of 3)	3192.0	NM_001301671	20610.0	Mm.24433	NM_019929	ENSMUSG00000020265	Sumo3	2810014B19Rik|D10Ertd345e|SMT3A|SUMO-3|Smt3h1	small ubiquitin-like modifier 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-90696286-4	chr5	90696185	90696385	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55758.0	NM_001310656	73246.0	Mm.30172	NM_028478	ENSMUSG00000029370	Rassf6	1600016B17Rik	Ras association (RalGDS/AF-6) domain family member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165329955-4	chr2	165329878	165330078	+	927.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3499.0	NM_207706	140579.0	Mm.35064	NM_080287	ENSMUSG00000017670	Elmo2	1190002F24Rik|CED-12	engulfment and cell motility 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-54402875-3	chr14	54402814	54403014	+	772.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011405, intron 4 of 11)	ORR1D1|LTR|ERVL-MaLR	6558.0	NM_001253680	20540.0	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	0.307913825039034	0.326223313745291	0.4874149353277	0.719174708394802	0.766243604681264	0.513763878300815	0.492170111043354	0.82871873870212	1.28052730098051	0.45943120842356	1
Merged-chr14-62167258-2	chr14	62167158	62167358	+	726.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17D2|LTR|ERVK	125721.0	NM_173419	239133.0	Mm.127330	NM_173419	ENSMUSG00000048281	Dleu7	BC038059	deleted in lymphocytic leukemia, 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128750240-2	chr2	128750140	128750340	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 5 of 18)	intron (NM_008587, intron 5 of 18)	51325.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-106055913-3	chr12	106055821	106056021	+	658.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029843, intron 6 of 13)	intron (NM_001029843, intron 6 of 13)	45658.0	NM_001029843	22367.0	Mm.2981	NM_011705	ENSMUSG00000021115	Vrk1	51PK	vaccinia related kinase 1	protein-coding	-2.05752322593321	-2.15521190974092	-2.16307242109104	-2.16952927915413	-2.17938029103484	-2.15350850414045	-2.16129297361887	-2.16837350464794	-0.683654500252594	0.846597994014493	1
Merged-chr9-54734042-3	chr9	54733954	54734154	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025376, intron 1 of 10)	intron (NM_001025376, intron 1 of 10)	495.0	NM_023191	66317.0	Mm.28437	NM_023191	ENSMUSG00000061559	Wdr61	2700038L12Rik|2810418I05Rik|REC14	WD repeat domain 61	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-107011159-1	chr11	107011059	107011259	+	988.0	f1_c57bl6.idr	Intergenic	RMER17C-int|LTR|ERVK	-11634.0	NM_010655	16647.0	Mm.12508	NM_010655	ENSMUSG00000018362	Kpna2	2410044B12Rik|IPOA1|PTAC58|Rch1	karyopherin (importin) alpha 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-55920879-4	chr7	55920745	55920945	+	765.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011370, intron 24 of 30)	MTC|LTR|ERVL-MaLR	41648.0	NM_001256133	93790.0	Mm.37249	NM_023647	ENSMUSG00000030452	Nipa2	2600017P10Rik|3830408P04Rik|AB041581	non imprinted in Prader-Willi/Angelman syndrome 2 homolog (human)	protein-coding	-0.284399591961837	0.191570109483703	1.09265958142622	-0.273730368658165	-0.282793802569924	-0.25765028542377	-0.265660856749618	-0.272624344612337	-4.22465126729595	0.0667440056977175	1
Merged-chr7-19474264-4	chr7	19474151	19474351	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-15757.0	NM_172279	232944.0	Mm.260504	NM_172279	ENSMUSG00000030397	Mark4	2410090P21Rik|C79806|Markl1	MAP/microtubule affinity regulating kinase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-50205364-2	chr17	50205264	50205464	+	995.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14867.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120159013-4	chr11	120158907	120159107	+	998.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-7656.0	NM_001164798	72055.0	Mm.253403	NM_024249	ENSMUSG00000061306	Slc38a10	1810073N04Rik	solute carrier family 38, member 10	protein-coding	3.86904438037099	3.65593885244732	4.11774427149783	4.11974637994627	3.89964696288745	3.94048124572377	4.08764652794827	3.96896466065054	0.0252704852750225	0.95439994272159	0.998431161219273
Merged-chr19-61238169-1	chr19	61238069	61238269	+	634.0	f0_balb.idr	Intergenic	Intergenic	-9751.0	NM_009970	12982.0	Mm.287228	NM_009970	ENSMUSG00000059326	Csf2ra	CD116|Csfgmra|GM-CSF-Ra|GM-CSFR	colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-30598795-3	chr16	30598712	30598912	+	809.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177632)	promoter-TSS (NM_177632)	-911.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-34755139-4	chr2	34755082	34755282	+	735.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356441)	promoter-TSS (NM_001356441)	50.0	NM_001356441	66691.0	Mm.156452	NM_025709	ENSMUSG00000026867	Gapvd1	2010005B09Rik|4432404J10Rik|AW108497|Gapex-5|RAP6|RME-6|mKIAA1521	GTPase activating protein and VPS9 domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-148795986-3	chr3	148795881	148796081	+	839.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	158654.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	0.919182852538216	2.33467069135746	2.49667912011672	0.956891432409599	2.22904143879895	1.29255626852061	0.984525748040704	1.98513750199926	-0.435296495580897	0.735300248385952	0.998431161219273
Merged-chr7-101504725-4	chr7	101504624	101504824	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001143849, exon 17 of 30)	exon (NM_001143849, exon 17 of 30)	29348.0	NR_029791	387157.0		NR_029791	ENSMUSG00000065446	Mir139	Mirn139|mir-139|mmu-mir-139	microRNA 139	ncRNA	5.46283046585379	5.16287346756502	5.93480496755914	5.30967828149243	5.41286796511555	4.93552433145059	4.82943308025294	4.9774019102094	-0.503978358136661	0.103029033112902	0.499788007798626
Merged-chr16-22537366-1	chr16	22537266	22537466	+	618.0	f0_balb.idr	intron (NM_001346673, intron 19 of 23)	intron (NM_001346673, intron 19 of 23)	-5182.0	NR_106170	102465887.0		NR_106170	ENSMUSG00000099071	Mir8095	Gm27566|mmu-mir-8095	microRNA 8095	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-70825706-4	chr2	70825630	70825830	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172664)	promoter-TSS (NM_172664)	-250.0	NM_172664	228012.0	Mm.136511	NM_172664	ENSMUSG00000041997	Tlk1	4930545J15Rik	tousled-like kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80842655-2	chr7	80842555	80842755	+	622.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19453.0	NM_009553	22691.0	Mm.358645	NM_009553	ENSMUSG00000038797	Zscan2	Zfp-29|Zfp29	zinc finger and SCAN domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-128811569-4	chr4	128811458	128811658	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J1|LTR|ERVL-MaLR	-5446.0	NM_001081098	230761.0	Mm.22616	NM_001081098	ENSMUSG00000028799	Zfp362	-	zinc finger protein 362	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-144247696-4	chr1	144247598	144247798	+	939.474976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015811, intron 3 of 4)	intron (NM_015811, intron 3 of 4)	1406.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-27688500-2	chr7	27688400	27688600	+	808.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001112731)	promoter-TSS (NM_001112731)	-840.0	NM_001112731	112415.0	Mm.145362	NM_198417	ENSMUSG00000057093	Zfp607b	C030039L03Rik	zinc finger protein 607B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5098570-2	chr19	5098470	5098670	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302333)	promoter-TSS (NM_001302333)	-49.0	NM_009920	12794.0	Mm.299737	NM_009920	ENSMUSG00000024873	Cnih2	CNIH-2|Cnil	cornichon family AMPA receptor auxiliary protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127421710-4	chr10	127421608	127421808	+	948.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359246, intron 1 of 23)	intron (NM_001359246, intron 1 of 23)	841.0	NM_001359243	71750.0	Mm.29342	NM_027900	ENSMUSG00000025404	R3hdm2	1300003K24Rik|AU041262|mKIAA1002	R3H domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-16599938-4	chr16	16599785	16599985	+	797.841675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001301817)	promoter-TSS (NM_001301817)	93.0	NM_001301817	224014.0	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-40644999-2	chr8	40644893	40645093	+	824.833374	f0_c57.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-10201.0	NM_001040699	54384.0	Mm.294871	NM_019433	ENSMUSG00000039431	Mtmr7	-	myotubularin related protein 7	protein-coding	3.08119413951614	3.26915206460979	2.66547092557119	3.06686280530757	1.83781235721375	1.33132676162957	1.81281968331741	1.24863784259676	-3.41292981701599	0.000283302336933946	0.00704225436160251
Merged-chr6-24966321-1	chr6	24966221	24966421	+	544.0	f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-10196.0	NM_177013	319832.0	Mm.127446	NM_177013	ENSMUSG00000048022	Tmem229a	6332401O19Rik	transmembrane protein 229A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-149949540-2	chr1	149949440	149949640	+	556.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008869, intron 1 of 17)	RSINE1|SINE|B4	11750.0	NM_008869	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-23304911-2	chr11	23304811	23305011	+	928.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1984.0	NM_001190401	17847.0	Mm.119155	NM_001190401	ENSMUSG00000056342	Usp34	A530081C03Rik|Murr2	ubiquitin specific peptidase 34	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-127333287-2	chr2	127333187	127333387	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2872.0	NM_010090	13537.0	Mm.4729	NM_010090	ENSMUSG00000027368	Dusp2	PAC1	dual specificity phosphatase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-12915325-2	chr17	12915225	12915425	+	753.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026310, intron 2 of 3)	intron (NM_026310, intron 2 of 3)	766.0	NM_026310	67681.0	Mm.290166	NM_026310	ENSMUSG00000057388	Mrpl18	1010001C05Rik|C79879|HSPC071|MRP-L18	mitochondrial ribosomal protein L18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-69993182-4	chr9	69993089	69993289	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001008238, intron 1 of 9)	intron (NM_001008238, intron 1 of 9)	3723.0	NM_001008238	12175.0	Mm.159777	NM_016787	ENSMUSG00000011958	Bnip2	5730523P12Rik|BNIP2beta|Nip21	BCL2/adenovirus E1B interacting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-32133730-4	chr5	32133617	32133817	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2755.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111446115-2	chr12	111446015	111446215	+	975.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_009396, exon 3 of 12)	exon (NM_009396, exon 3 of 12)	3454.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-66389356-4	chr7	66389237	66389437	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146191)	promoter-TSS (NM_146191)	-996.0	NM_146191	233328.0	Mm.33284	NM_146191	ENSMUSG00000015133	Lrrk1	AW319595|C230002E15Rik|D130026O16Rik|mKIAA1790	leucine-rich repeat kinase 1	protein-coding	4.80772868785049	4.84206355235463	5.28593536897538	5.32682246580029	4.5541435955347	4.55578302253237	4.62870739694487	4.91932155580245	-0.498892809936139	0.135928492632133	0.57581403090364
Merged-chr11-107482616-2	chr11	107482534	107482734	+	938.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025894, intron 1 of 10)	intron (NM_025894, intron 1 of 10)	3106.0	NM_025894	66997.0	Mm.491171	NM_025894	ENSMUSG00000020720	Psmd12	1500002F15Rik|AI480719|P55	proteasome (prosome, macropain) 26S subunit, non-ATPase, 12	protein-coding	1.05374715235689	0.92385623926382	0.417678380419274	0.721172694716755	0.403569215542772	0.426929253496731	1.00549831386167	0.582363163189069	-0.967809356247258	0.575532847418397	1
Merged-chr9-50697798-1	chr9	50697698	50697898	+	586.0	f0_balb.idr	intron (NM_178118, intron 5 of 19)	intron (NM_178118, intron 5 of 19)	30186.0	NM_178118	330938.0	Mm.82598	NM_178118	ENSMUSG00000032064	Dixdc1	4930563F16Rik|BC048182|Ccd1|Ccd1Aalpha1L|Ccd1Abeta1L|Ccd1BalphaL|Ccd1BbetaL|Ccd1CL|mKIAA1735	DIX domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-79989898-2	chr10	79989798	79989998	+	598.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007725, intron 1 of 6)	intron (NM_007725, intron 1 of 6)	1298.0	NM_007725	12798.0	Mm.157770	NM_007725	ENSMUSG00000004665	Cnn2	AA408047|AI324678|Calpo2	calponin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4085008-1	chr16	4084908	4085108	+	561.0	f1_c57bl6.idr	exon (NM_001025432, exon 31 of 31)	exon (NM_001025432, exon 31 of 31)	-7198.0	NM_026508	68015.0	Mm.123366	NM_026508	ENSMUSG00000005981	Trap1	2410002K23Rik|HSP75	TNF receptor-associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-76223342-2	chr16	76223242	76223442	+	748.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	100729.0	NR_040575	78215.0	Mm.243885	NR_040575		4930578N18Rik	-	RIKEN cDNA 4930578N18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-13779036-2	chr8	13778936	13779136	+	745.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027276, intron 16 of 17)	intron (NM_027276, intron 16 of 17)	-6579.0	NM_025924	67031.0	Mm.44858	NM_025924	ENSMUSG00000038398	Upf3a	2600001C03Rik|4930546M19Rik|RENT3A|UPF3	UPF3 regulator of nonsense transcripts homolog A (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-108878606-4	chr3	108878444	108878644	+	765.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177091, intron 4 of 12)	intron (NM_177091, intron 4 of 12)	11464.0	NM_177091	320181.0	Mm.244233	NM_177091	ENSMUSG00000045326	Fndc7	E230011A21Rik	fibronectin type III domain containing 7	protein-coding	1.39600723373943	0.85492917228112	1.21413498842234	0.659064454981763	1.11703418288196	1.02048023941127	0.66649048196081	0.816485185153727	-0.814632912373409	0.589891762108115	0.968992519410345
Merged-chr4-25995650-2	chr4	25995550	25995750	+	864.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur2|LINE|L1	-195647.0	NM_010243	14348.0	Mm.39101	NM_010243	ENSMUSG00000055373	Fut9	AI746471|AU067636|mFUT9|mFuc-TIX	fucosyltransferase 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-99247344-4	chr10	99247238	99247438	+	990.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	-15893.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-117198526-4	chr13	117198435	117198635	+	922.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-22038.0	NM_010330	13723.0	Mm.274926	NM_010330	ENSMUSG00000021728	Emb	AL022799|Gp70	embigin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59568812-4	chr15	59568721	59568921	+	774.383301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026746, intron 4 of 6)	intron (NM_026746, intron 4 of 6)	-79833.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-5050951-3	chr16	5050866	5051066	+	949.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356320, intron 1 of 16)	intron (NM_001356320, intron 1 of 16)	909.0	NM_001356320	170644.0	Mm.66356	NM_026666	ENSMUSG00000039473	Ubn1	1110029L11Rik|2610108L02Rik|AA673476|AW124741	ubinuclein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-117348763-3	chr12	117348650	117348850	+	865.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11738.0	NR_044987	432713.0	Mm.459210	NR_044987	ENSMUSG00000101930	Gm5441	-	predicted gene 5441	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-143023695-4	chr7	143023596	143023796	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110354, intron 4 of 4)	intron (NR_110354, intron 4 of 4)	18037.0	NM_001128081	27027.0	Mm.28172	NM_020286	ENSMUSG00000000244	Tspan32	AW208513|Art-1|BB235973|D7Wsu37e|Phemx|Tssc6	tetraspanin 32	protein-coding	3.01126673438817	3.30243073069848	4.8708410289395	3.07913869674555	3.41646846638342	4.65403382048991	4.55861167658034	4.51554873065531	0.720733132403189	0.204032781707394	0.69167790036705
Merged-chr19-5850876-2	chr19	5850776	5850976	+	691.75	f1_balb.idr|f1_c57bl6.idr	TTS (NM_026169)	TTS (NM_026169)	-5396.0	NR_003513	66961.0	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167817081-2	chr2	167816981	167817181	+	636.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-115246.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-125405887-8	chr5	125405768	125405968	+	893.064575	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15851.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-82403218-4	chr8	82403096	82403296	+	993.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001254747)	promoter-TSS (NM_001254747)	-610.0	NM_008357	16168.0	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	2.61264951109826	1.92657438584777	3.61147461510985	1.2750395042346	2.32155366469257	2.98160411648289	3.47501557234996	1.28234627210511	0.1588299666776	0.872200090702108	0.998431161219273
Merged-chr4-19849395-2	chr4	19849295	19849495	+	738.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30668.0	NM_028746	74087.0	Mm.173833	NM_028746	ENSMUSG00000041052	Slc7a13	0610009O04Rik|AGT-1|AGT1|XAT2	solute carrier family 7, (cationic amino acid transporter, y+ system) member 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30797311-2	chr2	30797211	30797411	+	602.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_028487, intron 4 of 6)	intron (NR_028487, intron 4 of 6)	4426.0	NM_198000	73598.0	Mm.34166	NM_198000	ENSMUSG00000044320	1700001O22Rik	1700113K14Rik|4930549G18Rik	RIKEN cDNA 1700001O22 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166655501-2	chr2	166655401	166655601	+	811.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	MTE2b|LTR|ERVL-MaLR	58331.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-154079845-2	chr1	154079745	154079945	+	542.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-121342.0	NM_001204908	100503355.0	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	Gm10178|Gm203	zinc finger protein 648	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-176824052-4	chr1	176823955	176824155	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357390, intron 1 of 18)	intron (NM_001357390, intron 1 of 18)	9395.0	NM_029756	76816.0	Mm.171399	NM_029756	ENSMUSG00000026504	Sdccag8	2700048G21Rik|5730470G24Rik|Cccap	serologically defined colon cancer antigen 8	protein-coding	4.46000499512245	4.64712383857568	3.5463695023418	3.84209558144961	4.07786932212788	4.63125762634673	3.36902527752656	3.79082284141222	-0.207436021277035	0.669803234598214	0.99359666617512
Merged-chr9-47616580-3	chr9	47616486	47616686	+	835.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	86234.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-47636806-4	chr6	47636666	47636866	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18328.0	NR_002841	19799.0		NR_002841		Rn4.5s	-	4.5S RNA	rRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-170644502-4	chr1	170644427	170644627	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177068)	promoter-TSS (NM_177068)	-5.0	NM_177068	320078.0	Mm.287131	NM_177068	ENSMUSG00000038463	Olfml2b	1110018N05Rik|4832415H08Rik|AI467542	olfactomedin-like 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-102386860-2	chr15	102386749	102386949	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-19467.0	NM_013672	20683.0	Mm.4618	NM_013672	ENSMUSG00000001280	Sp1	1110003E12Rik|AA450830|AI845540|Sp1-1	trans-acting transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-148533147-1	chr6	148533047	148533247	+	545.0	f1_balb.idr	Intergenic	B4A|SINE|B4	81162.0	NR_045867	622319.0	Mm.491049	NM_001037912	ENSMUSG00000070995	Gm6313	EG622319	predicted gene 6313	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-20204137-3	chr11	20204044	20204244	+	796.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008996, intron 1 of 5)	intron (NM_008996, intron 1 of 5)	2732.0	NM_008996	19324.0	Mm.271944	NM_008996	ENSMUSG00000020149	Rab1a	Gtbp|Rab-1|Rab1|Ypt1|mKIAA3012	RAB1A, member RAS oncogene family	protein-coding	0.307056685304414	-0.134859795240578	0.175594734306144	-0.142931055294758	0.482536405424059	-0.133830186920235	-0.138415449859626	-0.142318223878507	-0.0882076197433911	0.970285958883549	1
Merged-chr16-3741419-2	chr16	3741319	3741519	+	723.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2680.0	NM_148924	74120.0	Mm.29081	NM_148924	ENSMUSG00000022529	Zfp263	1200014J04Rik|AI326880|AU020888|NT2|mFPM315	zinc finger protein 263	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-79088212-4	chr11	79088109	79088309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013571, intron 1 of 17)	intron (NM_013571, intron 1 of 17)	-28373.0	NM_001348207	16706.0	Mm.4745	NM_013571	ENSMUSG00000018334	Ksr1	AW492498|B-KSR1|D11Bhm183e|D11Bhm184e|Ksr|RSU2|hb|mKSR1	kinase suppressor of ras 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180981468-1	chr1	180981368	180981568	+	543.0	f1_c57bl6.idr	Intergenic	Intergenic	36101.0	NM_001312918	13849.0	Mm.9075	NM_010145	ENSMUSG00000038776	Ephx1	EH|Eph-1|Eph1|Epxh1|mEH	epoxide hydrolase 1, microsomal	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27762711-4	chr2	27762612	27762812	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011305, exon 10 of 10)	3' UTR (NM_011305, exon 10 of 10)	52129.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-15208274-2	chr17	15208174	15208374	+	617.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32509.0	NR_046164	328747.0	Mm.256835	NR_046164	ENSMUSG00000097624	Gm5091	C330048F19	predicted gene 5091	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-69015393-4	chr2	69015287	69015487	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347161, intron 4 of 10)	intron (NM_001347161, intron 4 of 10)	-120413.0	NM_181547	329416.0	Mm.90047	NM_181547	ENSMUSG00000034738	Nostrin	Daip2|mDaIP2	nitric oxide synthase trafficker	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166587087-2	chr2	166586987	166587187	+	772.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_177782, exon 22 of 40)	exon (NM_177782, exon 22 of 40)	22565.0	NR_152154	433503.0	Mm.491336	NR_152154		Gm29679	-	predicted gene, 29679	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-147404290-1	chr4	147404190	147404390	+	1000.0	f1_balb.idr	intron (NM_001039209, intron 1 of 2)	intron (NM_001039209, intron 1 of 2)	-148987.0	NM_001014397	433804.0	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154	zinc finger protein 985	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-8597878-2	chr17	8597778	8597978	+	648.56665	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290707, intron 1 of 22)	intron (NM_001290707, intron 1 of 22)	71077.0	NM_001290707	23984.0	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-74017847-4	chr17	74017750	74017950	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053188, intron 4 of 4)	intron (NM_053188, intron 4 of 4)	30066.0	NM_053188	94224.0	Mm.38933	NM_053188	ENSMUSG00000038541	Srd5a2	5ART2|S5AR 2	steroid 5 alpha-reductase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114764585-2	chr11	114764485	114764685	+	734.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001102615)	promoter-TSS (NM_001102615)	-804.0	NM_001102615	286942.0	Mm.308713	NM_001102615	ENSMUSG00000010021	Kif19a	Kif19	kinesin family member 19A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-56183703-1	chr3	56183603	56183803	+	860.7999880000001	f0_balb.idr	promoter-TSS (NM_030595)	promoter-TSS (NM_030595)	-2.0	NM_030595	26422.0	Mm.384353	NM_030595	ENSMUSG00000027799	Nbea	Lyst2|mKIAA1544	neurobeachin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-32166976-2	chr19	32166876	32167076	+	683.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 5 of 9)	intron (NM_144792, intron 5 of 9)	44037.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-119600173-4	chr13	119599990	119600190	+	936.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177666, intron 2 of 3)	intron (NM_001177666, intron 2 of 3)	-23729.0	NM_020279	56838.0	Mm.143745	NM_020279	ENSMUSG00000074715	Ccl28	CCK1|MEC|Scya28	chemokine (C-C motif) ligand 28	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-25628640-2	chr15	25628540	25628740	+	582.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019472, intron 1 of 40)	Lx8b|LINE|L1	6090.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-118575123-4	chr5	118575008	118575208	+	881.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347445, intron 1 of 30)	intron (NM_001347445, intron 1 of 30)	14389.0	NM_172424	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-35290418-3	chr11	35290305	35290505	+	934.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011412, intron 4 of 35)	intron (NM_011412, intron 4 of 35)	168949.0	NM_011412	20564.0	Mm.478604	NM_011412	ENSMUSG00000056427	Slit3	Slil2|Slit1|b2b2362.1Clo	slit guidance ligand 3	protein-coding	3.04085799678548	3.20142907376206	3.53108209821921	2.84091942623052	1.89506287655325	1.39126549397999	1.87399423309169	1.58125892487852	-3.24515955858954	0.000185810526805714	0.00507440371915392
Merged-chr2-119547631-4	chr2	119547539	119547739	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019769)	promoter-TSS (NM_019769)	-12.0	NM_172857	241624.0	Mm.212773	NM_172857	ENSMUSG00000048647	Exd1	4932702D22Rik|Exdl1|mExd1	exonuclease 3'-5' domain containing 1	protein-coding	6.4108912074245	6.91533513766966	6.4689345130223	6.54012684799725	6.52020573696348	6.1430392798414	6.20195468179641	6.52549729092642	-0.24478706101632	0.241279202709361	0.737728541910355
Merged-chr6-5298332-4	chr6	5298218	5298418	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183308)	promoter-TSS (NM_183308)	55.0	NM_183308	330260.0	Mm.126984	NM_183308	ENSMUSG00000032667	Pon2	6330405I24Rik|AI481612	paraoxonase 2	protein-coding	3.65883855372947	4.71149740867551	3.46180254437193	4.82588823118188	3.99083888669566	4.32894913896321	3.76876614279457	4.12779588621554	-0.306932734176594	0.521620303389709	0.947836760490745
Merged-chr6-88518920-4	chr6	88518823	88519023	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016906)	promoter-TSS (NM_016906)	-123.0	NM_016906	53421.0	Mm.28375	NM_016906	ENSMUSG00000030082	Sec61a1	AA408394|AA410007|Sec61a	Sec61 alpha 1 subunit (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-39243566-3	chr6	39243470	39243670	+	930.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36797.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-43544241-3	chr11	43544137	43544337	+	898.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045530, intron 2 of 5)	intron (NM_001045530, intron 2 of 5)	15488.0	NM_001045530	380694.0	Mm.247595	NM_001045530	ENSMUSG00000044707	Ccnjl	Gm877	cyclin J-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123992991-2	chr5	123992910	123993110	+	865.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_145070, intron 7 of 31)	B3|SINE|B2	-3842.0	NR_105999	102465625.0		NR_105999	ENSMUSG00000098454	Mir7032	Gm27309|mmu-mir-7032	microRNA 7032	ncRNA	-0.386879804955071	-0.372440418978237	-0.377156140561096	-0.380804232163413	0.120747690098653	-0.371379363784859	0.433367946343468	-0.380166294541449	3.75245914528389	0.144664511802582	1
Merged-chr11-118488788-2	chr11	118488688	118488888	+	888.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001285436)	TTS (NM_001285436)	11956.0	NM_001359368	217364.0	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-98264708-2	chr13	98264608	98264808	+	635.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271391, intron 1 of 7)	B1_Mur2|SINE|Alu	1632.0	NM_001271388	68558.0	Mm.209642	NM_023472	ENSMUSG00000021661	Ankra2	1110004M18Rik|Ankra	ankyrin repeat, family A (RFXANK-like), 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91205620-4	chr2	91205561	91205761	+	948.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357067, intron 3 of 10)	intron (NM_001357067, intron 3 of 10)	2749.0	NM_007387	11432.0	Mm.45570	NM_007387	ENSMUSG00000002103	Acp2	Acp-2|LAP	acid phosphatase 2, lysosomal	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-97189462-1	chr7	97189362	97189562	+	608.0	f1_balb.idr	intron (NM_001162477, intron 1 of 9)	intron (NM_001162477, intron 1 of 9)	107711.0	NM_010248	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	0.0498826802794137	-0.0703555567914963	-0.0748692604230547	0.0759962949332659	0.172296206622973	0.521511362370008	-0.0738752811244393	0.212081284749217	2.1337153749156	0.307104399333093	1
Merged-chr6-113493901-2	chr6	113493801	113494001	+	767.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_133930)	TTS (NM_133930)	7917.0	NM_172487	210673.0	Mm.133060	NM_172487	ENSMUSG00000045009	Prrt3	6330505P20|B230206N24Rik	proline-rich transmembrane protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-34997939-1	chr12	34997839	34998039	+	848.0	f0_balb.idr	Intergenic	Intergenic	13178.0	NM_029294	75456.0	Mm.79179	NM_029294	ENSMUSG00000092305	Prps1l1	1700011K15Rik	phosphoribosyl pyrophosphate synthetase 1-like 1	protein-coding	1.06137967722024	2.00066016380208	1.46945683470547	2.17806305724962	2.8982872580716	3.86570048166116	1.48310375920771	2.44515710790816	2.43584064449381	0.0121873036710814	0.125481073907763
Merged-chr8-126867829-4	chr8	126867698	126867898	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18778.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	3.91342714296039	3.38664566641991	4.40855498575731	3.45839794738166	3.72635863443771	3.41237286761016	4.39445274551142	3.29218664374259	-0.112345261231386	0.831384453015617	0.998431161219273
Merged-chr16-87736423-2	chr16	87736323	87736523	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37469.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69559894-2	chr11	69559794	69559994	+	788.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_007911, exon 1 of 5)	5' UTR (NM_007911, exon 1 of 5)	343.0	NM_007911	13643.0	Mm.249637	NM_007911	ENSMUSG00000003934	Efnb3	EFL-6|ELF-3|Elk-L3|Epl8|LERK-8|NLERK-2	ephrin B3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128626378-4	chr10	128626266	128626466	+	980.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013765, intron 1 of 3)	CpG	140.0	NM_013765	27370.0	Mm.32118	NM_013765	ENSMUSG00000025362	Rps26	-	ribosomal protein S26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-108451642-2	chr6	108451542	108451742	+	576.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 44 of 61)	intron (NM_010585, intron 44 of 61)	-38101.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128547847-4	chr10	128547746	128547946	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134003)	promoter-TSS (NM_134003)	-102.0	NM_134003	103284.0	Mm.68289	NM_134003	ENSMUSG00000039810	Zc3h10	AI790326	zinc finger CCCH type containing 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-170215365-4	chr1	170215279	170215479	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360809)	promoter-TSS (NM_001360809)	28.0	NM_010633	16589.0	Mm.209150	NM_010633	ENSMUSG00000026667	Uhmk1	4732477C12Rik|4930500M09Rik|AA673513|AI449218|AU021979|C820018A03Rik|KIS|Kist|P-CIP2	U2AF homology motif (UHM) kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-150878897-3	chr2	150878772	150878972	+	776.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151505, intron 1 of 12)	intron (NR_151505, intron 1 of 12)	25859.0	NM_024465	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100254797-3	chr7	100254708	100254908	+	964.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027629, intron 4 of 13)	intron (NM_027629, intron 4 of 13)	-9736.0	NR_033563	14777.0	Mm.57225	NR_033563		Gpx2-ps1	AU041318	glutathione peroxidase 2, pseudogene 1	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30282050-2	chr7	30281943	30282143	+	850.666626	f1_balb.idr|f1_c57bl6.idr	intron (NR_144498, intron 2 of 2)	RLTR19|LTR|ERVK	-1622.0	NM_146186	233064.0	Mm.271677	NM_146186	ENSMUSG00000037020	Wdr62	2310038K02Rik|b2b1508Clo	WD repeat domain 62	protein-coding	-2.18138529563533	-2.15523716995652	-2.1631445789866	-2.16963996020037	-2.05513010215571	-2.15352360143315	-2.16135451490766	-2.16847729006863	0.759018020146679	0.829933115115583	1
Merged-chr14-46742577-3	chr14	46742473	46742673	+	711.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	-17968.0	NM_001360041	72391.0	Mm.272394	NM_028222	ENSMUSG00000037628	Cdkn3	2410006H10Rik|KAP	cyclin-dependent kinase inhibitor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-113366077-2	chr5	113365979	113366179	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8785.0	NM_001012726	503692.0	Mm.348794	NM_001012726	ENSMUSG00000053873	Aym1	-	activator of yeast meiotic promoters 1	protein-coding	2.43757061485865	2.43563261319239	1.28415199038338	2.65619875880499	2.86564749561067	1.32606532549094	2.47970646461503	1.71790974532588	-0.110819073421373	0.913566160107421	0.998431161219273
Merged-chr6-100370506-4	chr6	100370413	100370613	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC1|LINE|L1	-83155.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-11244420-4	chr19	11244319	11244519	+	958.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045317, intron 1 of 2)	intron (NR_045317, intron 1 of 2)	21732.0	NM_007641	12482.0	Mm.4046	NM_007641	ENSMUSG00000024673	Ms4a1	AA960661|Cd20|Ly-44|Ms4a2	membrane-spanning 4-domains, subfamily A, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-134122268-2	chr1	134122168	134122368	+	863.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027979, intron 1 of 11)	B4A|SINE|B4	11026.0	NM_027979	71884.0	Mm.328268	NM_027979	ENSMUSG00000026450	Chit1	2300002L19Rik	chitinase 1 (chitotriosidase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-108650714-4	chr12	108650607	108650807	+	984.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163396, intron 3 of 14)	L1M5|LINE|L1	-7913.0	NR_029771	723909.0		NR_029771	ENSMUSG00000065436	Mir342	Mirn342|mmu-mir-342	microRNA 342	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-11342897-2	chr8	11342797	11342997	+	952.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009932, intron 3 of 47)	intron (NM_009932, intron 3 of 47)	-30071.0	NM_009931	12826.0	Mm.738	NM_009931	ENSMUSG00000031502	Col4a1	Bru|Col4a-1|Raw|Svc	collagen, type IV, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141575765-3	chr7	141575673	141575873	+	598.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357068, intron 1 of 21)	(T)n|Simple_repeat|Simple_repeat	13593.0	NM_007459	11772.0	Mm.253090	NM_007459	ENSMUSG00000002957	Ap2a2	2410074K14Rik|AF006990|AW146353|Adtab|C78001|L25	adaptor-related protein complex 2, alpha 2 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-50729704-4	chr17	50729609	50729809	+	843.7333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31028.0	NM_001297747	12228.0	Mm.392910	NM_009770	ENSMUSG00000022863	Btg3	ANA|tob5	B cell translocation gene 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120307769-4	chr11	120307659	120307859	+	980.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39654.0	NR_105900	102465564.0		NR_105900	ENSMUSG00000098955	Mir6935	Gm27344|mmu-mir-6935	microRNA 6935	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-109025566-2	chr9	109025466	109025666	+	581.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153430, intron 10 of 13)	intron (NR_153430, intron 10 of 13)	-13001.0	NM_001284332	66940.0	Mm.196533	NM_025858	ENSMUSG00000025647	Shisa5	2310008D10Rik|6430628I05Rik|Scotin|mShisa5	shisa family member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5731391-2	chr17	5731291	5731491	+	787.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 7 of 8)	intron (NM_146073, intron 7 of 8)	-67266.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-94544135-4	chr11	94544046	94544246	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001013381, exon 5 of 9)	exon (NM_001013381, exon 5 of 9)	5061.0	NM_001013381	237926.0	Mm.342275	NM_001013381	ENSMUSG00000039096	Rsad1	B430319G23|BC056485	radical S-adenosyl methionine domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-30241515-2	chr13	30241415	30241615	+	650.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153546, intron 12 of 12)	intron (NM_153546, intron 12 of 12)	-94841.0	NM_177322	11607.0	Mm.35062	NM_177322	ENSMUSG00000049115	Agtr1a	1810074K20Rik|AG2S|AI551199|AT1|AT1a|AT2R1|AT2R1A|Agtr-1a|Agtr1|Angtr-1a	angiotensin II receptor, type 1a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-25166477-3	chr2	25166357	25166557	+	883.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14301.0	NM_025980	67122.0	Mm.46539	NM_025980	ENSMUSG00000078202	Nrarp	2700054M22Rik	Notch-regulated ankyrin repeat protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-65938162-4	chr5	65938067	65938267	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28957.0	NM_001081104	231252.0	Mm.140015	NM_001081104	ENSMUSG00000029205	Chrna9	2410015I05Rik|Acra9|EG666827|Gm8311	cholinergic receptor, nicotinic, alpha polypeptide 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-148675243-4	chr4	148675122	148675322	+	830.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31905.0	NM_001085505	230909.0	Mm.332067	NM_001085505	ENSMUSG00000070577	Gm572	b2b1167Clo	predicted gene 572	protein-coding	1.94953290146005	1.95062676247718	2.22758643653374	2.41452688947384	1.46431129189921	2.22069934375487	1.13310609348197	1.11080257249085	-1.6160323377344	0.141700503112502	0.587599989519745
Merged-chr8-117346046-3	chr8	117345940	117346140	+	718.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	-3130.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35104366-1	chr17	35104266	35104466	+	667.5	f1_c57bl6.idr	Intergenic	Intergenic	-3934.0	NM_148947	114652.0	Mm.222643	NM_148947	ENSMUSG00000034482	Ly6g5c	G5c|NG33	lymphocyte antigen 6 complex, locus G5C	protein-coding	0.96407880684344	1.75490511822648	0.799934652546502	1.50339547856053	0.760889483909471	1.89036403877384	2.17908642969712	0.786882423087983	0.787594776471149	0.573980427235303	0.964527909969019
Merged-chr5-85343043-2	chr5	85342943	85343143	+	616.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	722540.0	NM_001345902	12617.0	Mm.4649	NM_007683	ENSMUSG00000029253	Cenpc1	CENP-C|Cenpc	centromere protein C1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-143139058-2	chr7	143138958	143139158	+	931.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_008434, intron 1 of 15)	intron (NM_008434, intron 1 of 15)	31804.0	NM_008434	16535.0	Mm.439769	NM_008434	ENSMUSG00000009545	Kcnq1	AW559127|KVLQT1|Kcna9	potassium voltage-gated channel, subfamily Q, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-33768210-4	chr1	33768097	33768297	+	974.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359274, intron 12 of 13)	intron (NM_001359274, intron 12 of 13)	-10447.0	NM_145392	213539.0	Mm.247037	NM_145392	ENSMUSG00000042215	Bag2	2610042A13Rik|BC016230	BCL2-associated athanogene 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-34487595-4	chr5	34487471	34487671	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26408.0	NM_139064	231130.0	Mm.28615	NM_139064	ENSMUSG00000059866	Tnip2	1810020H16Rik|ABIN-2|AI428870	TNFAIP3 interacting protein 2	protein-coding	2.21099123891007	1.90151605999963	2.48874756905127	2.42148736346404	2.12574382552358	2.23592041752431	2.29249961014602	2.22594710647232	-0.148648459697729	0.858834355354224	0.998431161219273
Merged-chr3-116053532-4	chr3	116053443	116053643	+	930.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45246.0	NM_001163514	58193.0	Mm.41739	NM_021388	ENSMUSG00000027963	Extl2	3000001D04Rik|AW146439	exostoses (multiple)-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43924894-3	chr4	43924790	43924990	+	611.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016678, intron 11 of 20)	intron (NM_016678, intron 11 of 20)	-32812.0	NM_027450	384009.0	Mm.22213	NM_027450	ENSMUSG00000028480	Glipr2	5730414A08Rik|C77180|GAPR-1	GLI pathogenesis-related 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-22036453-2	chr10	22036365	22036565	+	794.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	31614.0	NM_053264	114671.0	Mm.288194	NM_053264	ENSMUSG00000069712	4930444G20Rik	-	RIKEN cDNA 4930444G20 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-92099576-4	chr5	92099516	92099716	+	794.450012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359197, intron 1 of 10)	intron (NM_001359197, intron 1 of 10)	-15872.0	NM_001080795	23881.0	Mm.290530	NM_011816	ENSMUSG00000029405	G3bp2	AA409541|E430034L04Rik|G3BP|mKIAA0660	GTPase activating protein (SH3 domain) binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-41196629-4	chr12	41196557	41196757	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053122, intron 4 of 6)	intron (NM_053122, intron 4 of 6)	172567.0	NM_053122	93757.0	Mm.363813	NM_053122	ENSMUSG00000056899	Immp2l	AI853880|IMP2|Tg(HLA-A/H2-D)2Enge	IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167918475-2	chr2	167918375	167918575	+	852.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13852.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-134379034-2	chr5	134378893	134379093	+	857.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081462, intron 20 of 29)	B2_Mm1a|SINE|B2	52539.0	NR_039544	100628570.0		NR_039544	ENSMUSG00000093311	Mir3965	mmu-mir-3965|mu-mir-3965	microRNA 3965	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-143629734-4	chr7	143629660	143629860	+	949.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_153817, exon 2 of 2)	non-coding (NR_153817, exon 2 of 2)	1690.0	NR_153817	414103.0	Mm.446579	NR_153817		E230032D23Rik	-	RIKEN cDNA E230032D23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129489668-4	chr2	129489577	129489777	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177653, intron 1 of 6)	intron (NM_177653, intron 1 of 6)	46925.0	NM_177653	228592.0	Mm.452175	NM_177653	ENSMUSG00000043727	F830045P16Rik	Sirpb3	RIKEN cDNA F830045P16 gene	protein-coding	5.52340121895418	5.29645482630741	5.51579627996345	5.35679248903944	5.62103766804197	4.80222616365655	5.46698137149699	5.58696174161287	-0.0149734172357625	0.958452821066611	0.998431161219273
Merged-chr5-141081555-2	chr5	141081455	141081655	+	706.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-80959.0	NM_175362	108723.0	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85427991-3	chr12	85427907	85428107	+	777.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2c|LINE|L2	-45883.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-75681284-4	chr7	75681176	75681376	+	919.216675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 12 of 36)	intron (NM_029332, intron 12 of 36)	-167062.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70084800-4	chr11	70084703	70084903	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7841.0	NM_007493	11890.0	Mm.1357	NM_007493	ENSMUSG00000040963	Asgr2	ASGPR2|Asgr|Asgr-2|HL-2	asialoglycoprotein receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-42714027-3	chr19	42713910	42714110	+	935.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38765.0	NM_029011	74580.0	Mm.329858	NM_029011	ENSMUSG00000060224	Pyroxd2	3830409H07Rik|4833409A17Rik	pyridine nucleotide-disulphide oxidoreductase domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-34781934-3	chr5	34781853	34782053	+	737.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010414, intron 1 of 66)	intron (NM_010414, intron 1 of 66)	20213.0	NM_010414	15194.0	Mm.209071	NM_010414	ENSMUSG00000029104	Htt	AI256365|C430023I11Rik|Hd|Hdh|IT15	huntingtin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71668850-2	chr17	71668750	71668950	+	798.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-4411.0	NM_177087	320159.0	Mm.187372	NM_177087	ENSMUSG00000045761	Togaram2	4632412N22Rik|Fam179a	TOG array regulator of axonemal microtubules 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-122010650-3	chr14	122010616	122010816	+	796.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026861, intron 8 of 8)	intron (NM_026861, intron 8 of 8)	-23958.0	NM_001037744	223262.0	Mm.297637	NM_001037744	ENSMUSG00000071229	Timm8a2	-	translocase of inner mitochondrial membrane 8A2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-60505194-2	chr8	60505094	60505294	+	805.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011834)	promoter-TSS (NM_011834)	-930.0	NM_011834	23923.0	Mm.35020	NM_011834	ENSMUSG00000057228	Aadat	AI875679|Aadt|KATII|Kat2|Kyat2|mKat-2	aminoadipate aminotransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35021303-4	chr17	35021219	35021419	+	896.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347347, intron 8 of 16)	intron (NM_001347347, intron 8 of 16)	4740.0	NM_001347347	27762.0	Mm.56895	NM_138582	ENSMUSG00000007030	Vwa7	C6orf27|D17H6S56E-3|G7c|NG37	von Willebrand factor A domain containing 7	protein-coding	0.829528536708981	1.20856580211497	0.569957777074807	1.21307938907675	0.705954100030529	0.951608974902149	0.57189220113501	1.00984289009669	-0.849723516427736	0.579402390576836	1
Merged-chr2-117374418-4	chr2	117374309	117374509	+	827.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31532.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	0.798511078314758	0.53092458802187	1.25087353684035	0.51337940533035	1.44309291705484	0.533133545339943	0.722934157195801	0.988892676358802	0.749735286659762	0.645527348892984	1
Merged-chr5-138265176-4	chr5	138265081	138265281	+	958.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001347507, exon 4 of 4)	3' UTR (NM_001347507, exon 4 of 4)	-1129.0	NM_153161	231807.0	Mm.164493	NM_153161	ENSMUSG00000036948	BC037034	-	cDNA sequence BC037034	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-27177345-4	chr8	27177277	27177477	+	862.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2731.0	NM_001080813	75767.0	Mm.205335	NM_029423	ENSMUSG00000031488	Rab11fip1	2010200K21Rik|4833414G05Rik|Rcp	RAB11 family interacting protein 1 (class I)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-25979-1	chr4	25879	26079	+	557.5	f1_c57bl6.idr	Intergenic	Intergenic	-3146104.0	NM_001167534	100312470.0	Mm.480297	NM_001167534	ENSMUSG00000115072	Vmn1r2	Gm11776	vomeronasal 1 receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-91049334-2	chr1	91049234	91049434	+	657.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111312, intron 1 of 12)	intron (NM_001111312, intron 1 of 12)	-4110.0	NM_001111311	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-92412445-6	chr16	92412252	92412452	+	934.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081549, intron 1 of 3)	intron (NM_001081549, intron 1 of 3)	-12274.0	NM_019466	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-101678596-5	chr13	101678416	101678616	+	808.608337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14114.0	NM_001024955	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0.873500426295934	0.262087876175345	0.255828306537687	0.550139579750781	0.718602482147653	0.755821568125345	0.25720861261971	0.251844210344079	0.0269901735438028	0.988921762679902	1
Merged-chr2-173738302-4	chr2	173738192	173738392	+	941.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019806, intron 1 of 5)	intron (NM_019806, intron 1 of 5)	721.0	NM_019806	56491.0	Mm.260456	NM_019806	ENSMUSG00000054455	Vapb	AI225786|AI840687|AI848259|D2Abb2e|R75548|VAP33b|Vamp33b	vesicle-associated membrane protein, associated protein B and C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-134486103-3	chr5	134486005	134486205	+	855.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29389.0	NM_001081464	57080.0	Mm.332735	NM_020331	ENSMUSG00000023079	Gtf2ird1	1700012P16Rik|BEN|Cream1|ESTM9|GTF3|Gtf2il|MusTRD1|Tg(Alb1-Myc)166.8Sst|WBSCR11|X83320	general transcription factor II I repeat domain-containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-54816656-4	chr6	54816557	54816757	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199143)	promoter-TSS (NM_199143)	-259.0	NM_199143	387524.0	Mm.286149	NM_199143	ENSMUSG00000058446	Znrf2	1190002C14Rik|AU044205|D6Ertd365e	zinc and ring finger 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-25333159-4	chr2	25333008	25333208	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027448)	promoter-TSS (NR_027448)	365.0	NM_001029983	227619.0	Mm.270798	NM_001029983	ENSMUSG00000036646	Man1b1	E430019H13Rik|ERMan1|Gm108|MANA-ER	mannosidase, alpha, class 1B, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-45534971-3	chr5	45534867	45535067	+	842.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021416, intron 12 of 15)	intron (NM_021416, intron 12 of 15)	14738.0	NM_025895	66999.0	Mm.283045	NM_025895	ENSMUSG00000015804	Med28	1500003D12Rik|AI451633|AU045690|Eg1|FKSG20|magicin	mediator complex subunit 28	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5637398-4	chr19	5637263	5637463	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009045)	promoter-TSS (NM_009045)	-127.0	NM_009045	19697.0	Mm.249966	NM_009045	ENSMUSG00000024927	Rela	p65	v-rel reticuloendotheliosis viral oncogene homolog A (avian)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5608873-2	chr19	5608773	5608973	+	738.900024	f1_balb.idr|f1_c57bl6.idr	exon (NM_178637, exon 5 of 14)	exon (NM_178637, exon 5 of 14)	834.0	NR_037603	81601.0	Mm.228930	NM_178637	ENSMUSG00000024926	Kat5	AI839539|CPLA2|Htatip|Htatip1|PLIP|Tip55|Tip60	K(lysine) acetyltransferase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-53571045-2	chr6	53570960	53571160	+	644.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001327821, intron 5 of 10)	intron (NM_001327821, intron 5 of 10)	-2314.0	NM_172728	231991.0	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	1.12245888461332	0.50976454488256	0.49901666556847	1.54995461466612	0.79732276896063	0.512166456454059	0.501400454738242	1.21716107888399	-0.939814380240332	0.583211990909732	0.966599221005409
Merged-chr19-6262438-4	chr19	6262351	6262551	+	843.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_194348)	TTS (NM_194348)	-2192.0	NR_029830	723957.0		NR_029830	ENSMUSG00000065582	Mir194-2	Mirn194-2|mir-194-2	microRNA 194-2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-174464119-4	chr2	174464017	174464217	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025983)	promoter-TSS (NM_025983)	-16.0	NM_025983	67126.0	Mm.20841	NM_025983	ENSMUSG00000016252	Atp5e	2410043G19Rik|ATPE|AV000645|Atp5f1e	ATP synthase, H+ transporting, mitochondrial F1 complex, epsilon subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76636821-2	chr15	76636671	76636871	+	947.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183091, intron 9 of 25)	intron (NM_183091, intron 9 of 25)	3158.0	NM_183091	72749.0	Mm.358749	NM_183091	ENSMUSG00000059323	Tonsl	2810439M11Rik|Nfkbil2	tonsoku-like, DNA repair protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-69202532-4	chr3	69202427	69202627	+	944.974976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-19892.0	NM_027843	71619.0	Mm.98122	NM_027843	ENSMUSG00000098207	Arl14	9130014L17Rik|Arf7	ADP-ribosylation factor-like 14	protein-coding	1.56017814864862	2.55413985577902	2.8238208140599	3.29673234375471	1.313707756743	3.3933562362585	3.41748605351064	2.39941765784793	0.318257322160096	0.722641923515882	0.998431161219273
Merged-chr6-94509457-4	chr6	94509338	94509538	+	961.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026255, intron 2 of 9)	intron (NM_026255, intron 2 of 9)	9124.0	NM_026255	67582.0	Mm.280725	NM_026255	ENSMUSG00000045100	Slc25a26	4930433D19Rik|4933433F13Rik|AW557176|D6Bwg0781e|Slc25a6	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 26	protein-coding	4.75932785926751	3.91051300222894	4.41601319719512	5.31329862210204	5.6487743658129	4.2712692878	4.44952563183859	5.41279956792637	0.458117543400714	0.284639011757225	0.788780724680855
Merged-chr6-72142751-3	chr6	72142642	72142842	+	875.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001035228, intron 4 of 6)	intron (NM_001035228, intron 4 of 6)	-19545.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111316366-1	chr12	111316266	111316466	+	1000.0	f1_balb.idr	intron (NM_183016, intron 18 of 36)	B3A|SINE|B2	45270.0	NM_033603	93835.0	Mm.197639	NM_033603	ENSMUSG00000021278	Amn	-	amnionless	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-90213938-2	chr9	90213838	90214038	+	920.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 10 of 12)	intron (NM_194334, intron 10 of 12)	50960.0	NM_001311115	108153.0	Mm.102141	NM_001003911	ENSMUSG00000032363	Adamts7	ADAM-TS7|ADAMTS7B	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-44385460-2	chr10	44385360	44385560	+	750.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25784.0	NR_035450	100316688.0		NR_035450	ENSMUSG00000089260	Mir1929	mir-1929|mmu-mir-1929	microRNA 1929	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-4194295-2	chr11	4194195	4194395	+	753.299988	f1_balb.idr|f1_c57bl6.idr	intron (NM_134023, intron 1 of 8)	Lx9|LINE|L1	7462.0	NM_134023	103724.0	Mm.28140	NM_134023	ENSMUSG00000034412	Tbc1d10a	AI447804|EPI64|Tbc1d10|mFLJ00288	TBC1 domain family, member 10a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-78349833-4	chr11	78349796	78349996	+	839.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011676)	TTS (NM_011676)	3186.0	NM_001313987	22248.0	Mm.284811	NM_011676	ENSMUSG00000002058	Unc119	D11Bhm52|HRG4|MRG4|Rg4|Rtg4|Unc119h	unc-119 lipid binding chaperone	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-8671003-4	chr16	8670905	8671105	+	937.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025821, intron 1 of 3)	intron (NM_025821, intron 1 of 3)	1148.0	NM_025821	52502.0	Mm.142095	NM_025821	ENSMUSG00000008393	Carhsp1	1200011K09Rik|Crhsp-24|D16Ertd465e	calcium regulated heat stable protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-25457786-4	chr14	25457705	25457905	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1380.0	NM_001310666	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-18219718-2	chr2	18219618	18219818	+	755.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_007869, exon 11 of 12)	exon (NM_007869, exon 11 of 12)	155133.0	NM_001252561	17354.0	Mm.209175	NM_010804	ENSMUSG00000026743	Mllt10	Af10|B130021D15Rik|D630001B22Rik|mKIAA4140	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-142932970-2	chr5	142932870	142933070	+	593.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-26216.0	NM_007393	11461.0	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24169078-4	chr17	24168984	24169184	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361535)	promoter-TSS (NM_001361535)	-275.0	NM_001361535	11984.0	Mm.30155	NM_009729	ENSMUSG00000024121	Atp6v0c	Atp6c|Atp6c2|Atp6l|Atpl|Atpl-rs1|PL16|VATL|Vma3	ATPase, H+ transporting, lysosomal V0 subunit C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165877272-2	chr2	165877172	165877372	+	562.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001291158, exon 1 of 24)	5' UTR (NM_001291158, exon 1 of 24)	1165.0	NM_001291158	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-71376673-6	chr2	71376636	71376836	+	959.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-9182.0	NM_172436	78830.0	Mm.30928	NM_172436	ENSMUSG00000027010	Slc25a12	2610002D09Rik|AI839531|B230107K20Rik|BB129864	solute carrier family 25 (mitochondrial carrier, Aralar), member 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-3195757-4	chr11	3195644	3195844	+	991.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2281.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-4922830-4	chr18	4922730	4922930	+	787.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	110344.0	NR_045881	100038439.0	Mm.387569	NR_045881	ENSMUSG00000097043	Gm10556	-	predicted gene 10556	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-24679169-4	chr1	24679092	24679292	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310483, intron 1 of 15)	intron (NM_001310483, intron 1 of 15)	274.0	NM_001310483	68421.0	Mm.336563	NM_026719	ENSMUSG00000073725	Lmbrd1	0910001K20Rik|AV347960	LMBR1 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-9744627-1	chr18	9744527	9744727	+	735.0	f0_balb.idr	intron (NM_130449, intron 2 of 9)	PB1D10|SINE|Alu	36979.0	NM_130449	140792.0	Mm.218571	NM_130449	ENSMUSG00000036103	Colec12	CL-P1|SRCL|Scara4	collectin sub-family member 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-34850288-4	chr18	34850207	34850407	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9718.0	NM_144865	225362.0	Mm.293588	NM_144865	ENSMUSG00000038555	Reep2	-	receptor accessory protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-24578649-4	chr16	24578552	24578752	+	970.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 4 of 12)	intron (NM_178665, intron 4 of 12)	49338.0	NR_038091	624582.0	Mm.439775	NR_038091		Morf4l1-ps1	A730098P11Rik	mortality factor 4 like 1, pseudogene 1	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-73473698-2	chr13	73473598	73473798	+	561.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145376, intron 1 of 13)	intron (NM_145376, intron 1 of 13)	6315.0	NM_145376	210992.0	Mm.284649	NM_145376	ENSMUSG00000021608	Lpcat1	2900035H07Rik|Aytl2|BB137372|BC005662|C87117|LPCAT|rd11	lysophosphatidylcholine acyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-17993331-4	chr13	17993239	17993439	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025904)	promoter-TSS (NM_025904)	12.0	NM_025904	67008.0	Mm.252918	NM_025904	ENSMUSG00000075054	Yae1d1	1600012F09Rik	Yae1 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102453718-4	chr12	102453613	102453813	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13900.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	3.3747462603338	3.01776993251901	2.66942172278646	3.71125838199174	2.34238219808451	2.91890034478082	3.1445549832902	3.13787966514557	-0.584464747221324	0.368524099584221	0.862916999449085
Merged-chr2-48816584-4	chr2	48816470	48816670	+	995.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007396, intron 1 of 10)	intron (NM_007396, intron 1 of 10)	2461.0	NM_007396	11480.0	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-60733169-3	chr18	60733081	60733281	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001348102)	promoter-TSS (NM_001348102)	-40.0	NM_001348102	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-110622827-4	chr9	110622708	110622908	+	842.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026012, intron 2 of 4)	intron (NM_026012, intron 2 of 4)	1585.0	NM_026012	67169.0	Mm.46680	NM_026012	ENSMUSG00000032491	Nradd	2610311B09Rik|BB104149|NRDD|NRH2|PLAIDD	neurotrophin receptor associated death domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44362859-2	chr7	44362759	44362959	+	816.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027049, intron 3 of 5)	G-rich|Low_complexity|Low_complexity	12171.0	NM_027049	69349.0	Mm.358922	NM_027049	ENSMUSG00000008028	1700008O03Rik	-	RIKEN cDNA 1700008O03 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191421788-6	chr1	191421686	191421886	+	847.388916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24745.0	NM_144880	226849.0	Mm.205569	NM_144880	ENSMUSG00000026626	Ppp2r5a	PR61alpha	protein phosphatase 2, regulatory subunit B', alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-22923615-3	chr5	22923505	22923705	+	865.2777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359998, intron 1 of 3)	intron (NM_001359998, intron 1 of 3)	-176721.0	NR_027362	330052.0	Mm.459265	NR_027362	ENSMUSG00000105076	A930003O13Rik	-	RIKEN cDNA A930003O13 gene	ncRNA	3.81617977202404	2.50103633275228	3.57048875313152	3.5320542413836	1.8735224070263	1.57752194735919	2.84242135252568	2.85851754551743	-1.80502582367473	0.0163061737165347	0.154048403347231
Merged-chr3-95644980-2	chr3	95644897	95645097	+	900.791626	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-13724.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	2.0391936700578	1.41199745040572	2.3153900750266	1.68567636607332	1.29119811085869	2.21497157077011	1.13687437486947	2.34260559918097	-0.113490109706805	0.917715829760946	0.998431161219273
Merged-chr10-55224446-2	chr10	55224346	55224546	+	557.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F|LINE|L1	-882471.0	NM_001163833	73390.0	Mm.181475	NM_133751	ENSMUSG00000047669	Msl3l2	1700060H10Rik	MSL3 like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-81010528-2	chr8	81010422	81010622	+	610.375	f0_c57.idr|f1_c57bl6.idr	intron (NM_027554, intron 2 of 9)	Tigger5|DNA|TcMar-Tigger	4384.0	NM_027554	74841.0	Mm.246018	NM_027554	ENSMUSG00000038250	Usp38	4631402N15Rik|4833420O05Rik|AA536967|AU044701|AW544820|mKIAA1891	ubiquitin specific peptidase 38	protein-coding	3.503319828883	2.10306840804692	3.28224393492737	3.10942661942622	3.62632387817969	1.56662914676176	3.45568102651999	1.7406416627143	-0.271159745866245	0.748962750782968	0.998431161219273
Merged-chr17-34654420-2	chr17	34654320	34654520	+	613.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_017406, intron 17 of 17)	intron (NM_017406, intron 17 of 17)	7274.0	NM_017406	12915.0	Mm.4068	NM_017406	ENSMUSG00000015461	Atf6b	AA617266|ATF6beta|Creb-rp|Crebl1	activating transcription factor 6 beta	protein-coding	1.26689367324945	2.81138559395806	1.58310494628033	1.08122411791699	2.57277760312702	2.15071231802566	2.0722228909644	1.33836677416221	0.472851019404529	0.668194627063207	0.993302559372498
Merged-chr6-6946665-1	chr6	6946565	6946765	+	818.0	f1_balb.idr	Intergenic	Lx3B|LINE|L1	-9353.0	NM_001077713	71238.0	Mm.389086	NM_001077713	ENSMUSG00000042505	Sdhaf3	0610005M07Rik|4933430A16Rik|Acn9	succinate dehydrogenase complex assembly factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-121536300-4	chr9	121536207	121536407	+	789.516663	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C2-int|LTR|ERVL-MaLR	-40613.0	NM_031161	12424.0	Mm.2619	NM_031161	ENSMUSG00000032532	Cck	-	cholecystokinin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-120933398-4	chr9	120933284	120933484	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001165902)	promoter-TSS (NM_001165902)	-16.0	NM_007614	12387.0	Mm.291928	NM_007614	ENSMUSG00000006932	Ctnnb1	Bfc|Catnb|Mesc	catenin (cadherin associated protein), beta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-132121306-4	chr2	132121198	132121398	+	976.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355430, intron 1 of 15)	B3|SINE|B2	23810.0	NM_001355431	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-149586896-5	chr4	149586836	149587036	+	757.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023051, intron 1 of 18)	CpG	468.0	NM_023051	65945.0	Mm.38993	NM_023051	ENSMUSG00000039953	Clstn1	1810034E21Rik|Cst-1|Cstn1	calsyntenin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-44172394-4	chr16	44172306	44172506	+	886.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001029889)	promoter-TSS (NM_001029889)	-991.0	NM_001029889	207806.0	Mm.310566	NM_001029889	ENSMUSG00000068284	Usf3	5530400K22Rik|Gm1779|Gm608|mKIAA2018	upstream transcription factor family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-59864575-2	chr10	59864475	59864675	+	940.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001291443)	TTS (NM_001291443)	-15016.0	NM_019965	56709.0	Mm.103610	NM_019965	ENSMUSG00000020109	Dnajb12	Dj10|mDj10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-110974936-3	chr12	110974841	110975041	+	978.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3677.0	NM_001361917	74251.0	Mm.250989	NM_175207	ENSMUSG00000037904	Ankrd9	2500003O20Rik	ankyrin repeat domain 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-63979619-2	chr9	63979519	63979719	+	696.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008542, intron 3 of 3)	intron (NM_008542, intron 3 of 3)	42440.0	NM_008542	17130.0	Mm.325757	NM_008542	ENSMUSG00000036867	Smad6	Madh6|b2b390Clo	SMAD family member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-58551998-4	chr4	58551911	58552111	+	875.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010336, intron 1 of 3)	intron (NM_010336, intron 1 of 3)	1282.0	NM_172989	14745.0	Mm.4772	NM_010336	ENSMUSG00000038668	Lpar1	AI326300|Edg2|Gpcr26|Kdt2|lpA1|vzg-1	lysophosphatidic acid receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-67168493-4	chr6	67168420	67168620	+	836.145874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR42|LTR|ERVK	-98459.0	NM_001113566	66870.0	Mm.240490	NM_025814	ENSMUSG00000036371	Serbp1	1200009K13Rik|9330147J08Rik|AL022786|Pairbp1	serpine1 mRNA binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-35129805-2	chr4	35129705	35129905	+	574.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_178061, intron 1 of 3)	intron (NM_178061, intron 1 of 3)	-22250.0	NM_199157	387510.0	Mm.386929	NM_199157	ENSMUSG00000042993	Ifnk	-	interferon kappa	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115687079-2	chr11	115686979	115687179	+	606.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001313936, intron 2 of 5)	L1M4|LINE|L1	12455.0	NM_001313937	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-4227152-3	chr7	4227020	4227220	+	649.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10634.0	NM_001081239	232801.0	Mm.258061	NM_001081239	ENSMUSG00000070873	Lilra5	E030017K20|EG232801|Gm4878|Lilrc1	leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-85556313-3	chr13	85556203	85556403	+	822.438904	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-266817.0	NM_145452	218397.0	Mm.259653	NM_145452	ENSMUSG00000021549	Rasa1	Gap|RasGAP|Rasa	RAS p21 protein activator 1	protein-coding	0.445975412655087	0.18931400612715	-0.149600636939501	-0.152891027057866	0.0978300397114669	-0.144352399977629	-0.148658036847656	0.00410110226529421	-1.4113418052525	0.530458368132275	1
Merged-chr11-89028902-4	chr11	89028834	89029034	+	931.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29531.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	4.35548231708537	4.74180297658149	3.09840007143809	3.71221254925865	3.33535870917398	2.96487348571726	2.99734801087731	3.50887057979163	-1.29708214544069	0.0205118850005092	0.182297478693414
Merged-chr10-99204721-4	chr10	99204595	99204795	+	998.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58536.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-27631709-4	chr3	27631610	27631810	+	710.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356953, intron 3 of 26)	intron (NM_001356953, intron 3 of 26)	-46715.0	NR_037275	100526525.0		NR_037275	ENSMUSG00000092695	Mir3092	mir-3092|mmu-mir-3092	microRNA 3092	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-71015362-1	chr12	71015262	71015462	+	1000.0	f0_c57.idr	promoter-TSS (NM_001081195)	promoter-TSS (NM_001081195)	461.0	NR_045056	73204.0	Mm.363770	NR_045055	ENSMUSG00000085622	3110056K07Rik	4921536K06Rik	RIKEN cDNA 3110056K07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-44527848-2	chr11	44527748	44527948	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166553, intron 2 of 5)	intron (NM_001166553, intron 2 of 5)	8471.0	NM_001166553	74315.0	Mm.156771	NM_028862	ENSMUSG00000019189	Rnf145	3732413I11Rik|TMRF1	ring finger protein 145	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-88837497-3	chr15	88837466	88837666	+	809.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	17920.0	NM_029720	76737.0	Mm.292567	NM_029720	ENSMUSG00000023272	Creld2	5730592L21Rik|C85758	cysteine-rich with EGF-like domains 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-115826653-1	chr4	115826553	115826753	+	857.0	f1_c57bl6.idr	Intergenic	Intergenic	-1439.0	NM_175308	100465.0	Mm.35571	NM_175308	ENSMUSG00000028709	Mob3c	AW822253|D130076I06Rik|Mobkl2c	MOB kinase activator 3C	protein-coding	0.507550625363512	0.242000413149397	0.234435376935906	1.15468829689738	0.22020705274401	0.776933094202265	0.236108336667642	0.560975606264017	-0.751514254649295	0.694909212552703	1
Merged-chr6-97398563-4	chr6	97398470	97398670	+	978.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 5 of 23)	intron (NM_145148, intron 5 of 23)	60716.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5817010-2	chr19	5816910	5817110	+	895.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14338.0	NR_002847	72289.0	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-153817472-1	chr4	153817372	153817572	+	1000.0	f0_balb.idr	Intergenic	Intergenic	133004.0	NR_040670	407793.0	Mm.260950	NR_040670		BC039966	-	cDNA sequence BC039966	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-156720920-4	chr2	156720839	156721039	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040505)	promoter-TSS (NR_040505)	-26.0	NM_001042488	228836.0	Mm.22094	NM_146128	ENSMUSG00000061689	Dlgap4	AI225853|BC024558|DAP-4|DAP4|SAPAP-4|Sapap4|WBP16	DLG associated protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-37793127-3	chr13	37793006	37793206	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32932.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	2.68465017617101	2.56286694621259	3.17736975102547	3.60313191202025	4.12277904255886	3.2010751079682	4.47198595507858	3.93358818755822	1.40035026247778	0.0143210997172659	0.140456039025414
Merged-chr1-120511248-2	chr1	120511148	120511348	+	661.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-6224.0	NM_010766	17167.0	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-34552827-2	chr4	34552727	34552927	+	881.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001007589, intron 1 of 4)	B1_Mus1|SINE|Alu	2212.0	NM_001007589	433693.0	Mm.389532	NM_026019	ENSMUSG00000028291	Akirin2	2700059D21Rik|AA114675|AA522011|AU019887|Akirin-2	akirin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80739794-2	chr10	80739694	80739894	+	652.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_007460, intron 1 of 30)	B3|SINE|B2	2481.0	NM_007460	11776.0	Mm.27082	NM_007460	ENSMUSG00000020198	Ap3d1	AA407035|Ap3d|Bolvr|mBLVR1|mh|mocha	adaptor-related protein complex 3, delta 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-12250099-4	chr17	12249993	12250193	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357722, intron 11 of 25)	RLTR44A|LTR|ERVK	68567.0	NM_011948	26407.0	Mm.28587	NM_011948	ENSMUSG00000014426	Map3k4	D17Rp17|D17Rp17e|MAPKKK4|MEKK 4|MTK1|Mek4b|Mekk4|RP17|Rp17a|Tas|mKIAA0213	mitogen-activated protein kinase kinase kinase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-18050968-2	chr2	18050868	18051068	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2519.0	NM_028317	72668.0	Mm.102183	NM_028317	ENSMUSG00000054074	Skida1	2810030E01Rik|5730507N06Rik|BB088113|DLN-1	SKI/DACH domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-43030352-3	chr17	43030266	43030466	+	650.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178589, intron 1 of 5)	intron (NM_178589, intron 1 of 5)	13811.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	0.973803459573137	1.28377256787198	1.01762270081088	2.17100695808468	2.06871292547446	1.81330970588604	1.74889310736365	1.69197315479827	1.06781220927988	0.378498784331289	0.871397690824179
Merged-chr11-69323282-3	chr11	69323167	69323367	+	860.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024206)	promoter-TSS (NM_001024206)	606.0	NM_172560	216846.0	Mm.28774	NM_172560	ENSMUSG00000032782	Cntrob	9830165K03Rik|Lip8|Nip2	centrobin, centrosomal BRCA2 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81081501-4	chr15	81081366	81081566	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001082536, intron 2 of 13)	intron (NM_001082536, intron 2 of 13)	23581.0	NM_153049	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	4.07705235589327	3.33099387510331	3.73681239316778	3.9423412064113	4.14774657322351	2.97225155509655	3.4416604126861	2.90621928342826	-0.47579752168619	0.392088587332047	0.881062209518629
Merged-chr16-38619220-4	chr16	38619107	38619307	+	780.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020260, intron 7 of 11)	intron (NM_020260, intron 7 of 11)	56393.0	NM_026407	67846.0	Mm.310476	NM_026407	ENSMUSG00000002845	Tmem39a	2610033C09Rik	transmembrane protein 39a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115264221-1	chr11	115264121	115264321	+	553.0	f1_balb.idr	intron (NM_010350, intron 3 of 14)	intron (NM_010350, intron 3 of 14)	3022.0	NM_010350	14813.0	Mm.39090	NM_010350	ENSMUSG00000020734	Grin2c	GluN2C|NMDAR2C|NR2C	glutamate receptor, ionotropic, NMDA2C (epsilon 3)	protein-coding	-0.270918187810685	-0.41714587640588	-0.422341991538494	-0.426376883123429	-0.266420369853429	-0.415979732414317	-0.421192721599389	0.610719073990948	3.00177308139904	0.216000714268072	1
Merged-chr16-17147737-2	chr16	17147637	17147837	+	822.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001306169)	promoter-TSS (NM_001306169)	-508.0	NM_001306169	76872.0	Mm.101656	NM_029779	ENSMUSG00000022768	Ccdc116	4930432J16Rik	coiled-coil domain containing 116	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-33948661-2	chr17	33948561	33948761	+	997.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_020603, exon 12 of 15)	exon (NM_020603, exon 12 of 15)	2827.0	NM_019420	54218.0	Mm.11132	NM_019420	ENSMUSG00000067370	B3galt4	Gal-T2|Galt2	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102437691-2	chr12	102437608	102437808	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_011175, intron 1 of 13)	B1_Mur2|SINE|Alu	2105.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-70266934-2	chr10	70266834	70267034	+	624.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025807, intron 2 of 5)	intron (NM_025807, intron 2 of 5)	21658.0	NM_025807	66859.0	Mm.19325	NM_025807	ENSMUSG00000037762	Slc16a9	1200003C15Rik|4930425B13Rik|AI552636	solute carrier family 16 (monocarboxylic acid transporters), member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-140857403-4	chr7	140857356	140857556	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053194)	promoter-TSS (NM_053194)	59.0	NM_053194	101489.0	Mm.281916	NM_053194	ENSMUSG00000025485	Ric8a	AI114950|RIC-8|Ric8	RIC8 guanine nucleotide exchange factor A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97449385-2	chr6	97449285	97449485	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	B4A|SINE|B4	9901.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-4903606-3	chr6	4903537	4903737	+	960.380981	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181595, intron 1 of 15)	CpG	317.0	NM_181595	243725.0	Mm.332901	NM_181595	ENSMUSG00000032827	Ppp1r9a	2810430P21Rik|4930518N04Rik|5330407E15|A230094E16Rik|BB181831|NRB|mKIAA1222|neurabin-I	protein phosphatase 1, regulatory (inhibitor) subunit 9A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36699733-4	chr18	36699643	36699843	+	960.116699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3818.0	NM_172831	240216.0	Mm.252323	NM_172831	ENSMUSG00000044719	E230025N22Rik	EG240216	Riken cDNA E230025N22 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-121463829-5	chr10	121463680	121463880	+	839.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138956, intron 1 of 4)	RMER19B|LTR|ERVK	12470.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	0.151999158182547	1.1477447234659	0.362333383018936	0.495475584926461	0.680578519136088	0.176869461266733	0.169316428060282	0.162823942170614	-1.69696729485781	0.387117196071139	1
Merged-chr11-75325451-4	chr11	75325255	75325455	+	726.214294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026653, intron 5 of 16)	intron (NM_026653, intron 5 of 16)	23028.0	NM_001164223	68275.0	Mm.102574	NM_026653	ENSMUSG00000000751	Rpa1	5031405K23Rik|70kDa|AA589576|AW557552|RF-A|RP-A|Rpa	replication protein A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-31758961-4	chr5	31758853	31759053	+	982.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144541, intron 3 of 11)	intron (NM_144541, intron 3 of 11)	60903.0	NM_144541	107976.0	Mm.482126	NM_144541	ENSMUSG00000052139	Babam2	6030405P19Rik|AI429776|B830038C02Rik|Bre	BRISC and BRCA1 A complex member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-123531041-4	chr4	123530937	123531137	+	940.241699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199137, intron 5 of 92)	intron (NM_001199137, intron 5 of 92)	-85383.0	NR_105824	102465214.0		NR_105824	ENSMUSG00000099005	Mir6398	Gm27657|mmu-mir-6398	microRNA 6398	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141146747-2	chr4	141146647	141146847	+	617.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1175.0	NM_172518	213499.0	Mm.28865	NM_172518	ENSMUSG00000028920	Fbxo42	6720460I06Rik|mKIAA1332	F-box protein 42	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-109448462-4	chr3	109448360	109448560	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020505, intron 2 of 26)	L3|LINE|CR1	107777.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	4.58833925687104	4.64120237744265	5.10877175345265	3.87751198629593	4.62304503288125	5.3259541858144	5.0409425167812	3.55772234032098	0.191757216793632	0.664798946924318	0.992236411328325
Merged-chr18-75501721-3	chr18	75501618	75501818	+	755.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201354, intron 9 of 11)	intron (NM_201354, intron 9 of 11)	-12927.0	NR_045879	100038353.0	Mm.440724	NR_045879	ENSMUSG00000097712	Gm10532	-	predicted gene 10532	ncRNA	0.68800350537643	0.432235535643561	0.556461036015358	0.231952027873752	0.939644409644811	0.244247882337592	0.415102198212227	0.232781932851766	0.0959557117158534	0.958833916826962	1
Merged-chr18-75599947-4	chr18	75599858	75600058	+	981.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201354, intron 6 of 11)	RMER1C|Other|Other	85313.0	NR_045879	100038353.0	Mm.440724	NR_045879	ENSMUSG00000097712	Gm10532	-	predicted gene 10532	ncRNA	4.7338254926392	4.0760049308167	4.77866647488801	3.96375397117505	3.4462547856768	3.48175050309788	3.56570889073168	4.04429547524021	-1.06857922129348	0.0203452672397188	0.181443892226571
Merged-chr10-61146957-4	chr10	61146899	61147099	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316674, intron 1 of 14)	(CAGCT)n|Simple_repeat|Simple_repeat	685.0	NM_009163	20397.0	Mm.412319	NM_009163	ENSMUSG00000020097	Sgpl1	AI428538|D10Xrf456|S1PL|Spl	sphingosine phosphate lyase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96498944-1	chr3	96498844	96499044	+	544.0	f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	-26241.0	NM_027126	69585.0	Mm.171314	NM_027126	ENSMUSG00000038403	Hfe2	2310035L15Rik|5230400G09Rik|AI414844|AI789733|DL-M|HJV|Rgmc|hemojuvelin	hemochromatosis type 2 (juvenile)	protein-coding	0.296886935389805	1.63962297932816	0.338440461028976	0.323289718207174	0.300920791879778	2.17440414615193	0.342676120329036	0.806355631952939	1.10520865150021	0.736351577418717	0.998431161219273
Merged-chr6-147099562-1	chr6	147099462	147099662	+	622.0	f0_balb.idr	intron (NM_001081237, intron 1 of 2)	intron (NM_001081237, intron 1 of 2)	8487.0	NM_001081237	232539.0	Mm.491206	NM_001081237	ENSMUSG00000040102	Klhl42	A330079N23Rik|AI450355|C230080I20Rik|Ctb9|Klhdc5|mKIAA1340	kelch-like 42	protein-coding	1.80663421869587	1.16164661418124	2.80169328629666	1.36230121058859	1.82357031503056	2.92773144111461	2.66796602167568	1.10357255968808	0.767120560322629	0.4881804733844	0.933453007555711
Merged-chr9-44733703-2	chr9	44733603	44733803	+	962.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153537, intron 1 of 21)	CpG	1495.0	NM_153537	102693.0	Mm.28639	NM_153537	ENSMUSG00000048537	Phldb1	AU041016|D330037A14Rik|Ll5a	pleckstrin homology like domain, family B, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-116415072-1	chr12	116414972	116415172	+	641.0	f1_balb.idr	intron (NM_133762, intron 6 of 28)	intron (NM_133762, intron 6 of 28)	9670.0	NM_133762	76044.0	Mm.491196	NM_133762	ENSMUSG00000042029	Ncapg2	5830426I05Rik|Luzp5|Mtb|mCAP-G2	non-SMC condensin II complex, subunit G2	protein-coding	1.51809631374297	0.803473754481957	1.67077484396407	1.2821864681853	0.762309595798593	1.64709292492946	1.33485605471118	0.780217848262217	-0.622563350731214	0.665115603671923	0.992297564393899
Merged-chr9-110642038-2	chr9	110641938	110642138	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_183276, exon 8 of 54)	exon (NM_183276, exon 8 of 54)	-5923.0	NR_106186	102466885.0		NR_106186	ENSMUSG00000099275	Mir8107	Gm27455|mmu-mir-8107	microRNA 8107	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-108660115-1	chr6	108660015	108660215	+	1000.0	f0_c57.idr	promoter-TSS (NM_011498)	promoter-TSS (NM_011498)	-514.0	NM_011498	20893.0	Mm.2436	NM_011498	ENSMUSG00000030103	Bhlhe40	Bhlhb2|C130042M06Rik|CR8|Clast5|Dec1|Sharp2|Stra13|Stra14	basic helix-loop-helix family, member e40	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120307120-2	chr11	120307020	120307220	+	814.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40293.0	NR_105900	102465564.0		NR_105900	ENSMUSG00000098955	Mir6935	Gm27344|mmu-mir-6935	microRNA 6935	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-4456742-2	chr2	4456642	4456842	+	703.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 2 of 23)	B4A|SINE|B4	55766.0	NM_001177843	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-108162075-4	chr10	108161977	108162177	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027892)	promoter-TSS (NM_027892)	-323.0	NM_027892	17931.0	Mm.422959	NM_027892	ENSMUSG00000019907	Ppp1r12a	1200015F06Rik|5730577I22Rik|AA792106|AV099298|D10Ertd625e|Mypt1	protein phosphatase 1, regulatory (inhibitor) subunit 12A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-106388000-1	chr8	106387900	106388100	+	592.333313	f0_balb.idr	Intergenic	Intergenic	-27339.0	NM_011764	22751.0	Mm.295582	NM_011764	ENSMUSG00000031907	Zfp90	6430515L01Rik|KRAB17|NK10|Zfp64|Zfp83|mKIAA1954	zinc finger protein 90	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-131517745-4	chr2	131517646	131517846	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177840, intron 3 of 3)	intron (NM_001177840, intron 3 of 3)	25884.0	NM_001177838	228608.0	Mm.136586	NM_145533	ENSMUSG00000027333	Smox	B130066H01Rik|PAO|PAOh1|SMO	spermine oxidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30706367-2	chr2	30706267	30706467	+	621.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-14843.0	NR_037272	100526499.0		NR_037272	ENSMUSG00000093091	Mir3089	mir-3089|mmu-mir-3089	microRNA 3089	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21479014-2	chr9	21478914	21479114	+	747.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001253893, exon 10 of 21)	exon (NM_001253893, exon 10 of 21)	17550.0	NR_029585	387194.0		NR_029585	ENSMUSG00000065547	Mir199a-1	Mirn199|Mirn199a-1|mir-199a-1	microRNA 199a-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-43966018-4	chr16	43965938	43966138	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13012.0	NM_001007460	332175.0	Mm.327852	NM_001007460	ENSMUSG00000036304	Zdhhc23	Gm1751|Gm779|nidd	zinc finger, DHHC domain containing 23	protein-coding	5.96673653893062	6.15644843627548	5.88192514934468	5.60412882600764	5.95715429345697	5.99070028538324	6.27441075705466	6.31741638824322	0.253953473474839	0.276860713127517	0.781366007374687
Merged-chr10-98608633-4	chr10	98608533	98608733	+	978.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-256766.0	NR_045179	667438.0	Mm.414522	NR_045179	ENSMUSG00000112896	Gm8633	EG667438	predicted gene 8633	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-25553396-2	chr2	25553296	25553496	+	935.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5b|LINE|L1	-4504.0	NM_021519	59022.0	Mm.29945	NM_021519	ENSMUSG00000015092	Edf1	0610008L11Rik|AA409425	endothelial differentiation-related factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-108472009-1	chr6	108471909	108472109	+	807.0	f0_balb.idr	intron (NM_010585, intron 45 of 61)	intron (NM_010585, intron 45 of 61)	-17734.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-36122117-2	chr8	36121974	36122174	+	938.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_172911, intron 3 of 5)	intron (NM_172911, intron 3 of 5)	27246.0	NM_172911	244418.0	Mm.244971	NM_172911	ENSMUSG00000050271	Prag1	9830148H23|D8Ertd82e|NACK|Sgk223|mFLJ00269	PEAK1 related kinase activating pseudokinase 1	protein-coding	0.385508164762634	1.11195851517846	0.406793641980315	1.38539401058047	0.560875224157975	0.419202307559641	0.409042756502043	1.12735555240804	-1.10202331846842	0.538032120412697	1
Merged-chr18-24045859-4	chr18	24045760	24045960	+	808.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	-25047.0	NM_021559	59057.0	Mm.417427	NM_021559	ENSMUSG00000051469	Zfp24	3526401F17Rik|5033419P20Rik|AI480505|AI642085|AL024422|KOX17|ZF-12|Zfp191|Znf24	zinc finger protein 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-5759125-3	chr11	5759022	5759222	+	701.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361588, intron 1 of 6)	Lx8b|LINE|L1	-3028.0	NR_015577	76508.0	Mm.260203	NR_015577	ENSMUSG00000083844	Ube2d-ps	1600028I17Rik|2210015D19Rik|AI596465	ubiquitin-conjugating enzyme E2D, pseudogene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-28539377-3	chr2	28539261	28539461	+	872.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145836, intron 1 of 17)	intron (NM_001145836, intron 1 of 17)	5897.0	NM_001145836	19730.0	Mm.5236	NM_009058	ENSMUSG00000026821	Ralgds	Gnds|Rgds|mKIAA1308	ral guanine nucleotide dissociation stimulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78778645-4	chr15	78778480	78778680	+	890.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130859, intron 17 of 20)	intron (NM_130859, intron 17 of 20)	-5135.0	NM_008595	17305.0	Mm.149235	NM_008595	ENSMUSG00000018169	Mfng	AW546563	MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	1.92983983598165	1.01508263159028	2.00937727062596	2.44545718994118	0.943143290842128	1.0204192080462	2.22898354843735	1.40898519701992	-1.15457882584776	0.359133961519211	0.856306289008338
Merged-chr11-106674057-2	chr11	106673957	106674157	+	841.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001305158, intron 12 of 14)	B4A|SINE|B4	41224.0	NM_001305158	18613.0	Mm.343951	NM_008816	ENSMUSG00000020717	Pecam1	C85791|Cd31|PECAM-1|Pecam	platelet/endothelial cell adhesion molecule 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-35399098-2	chr2	35398998	35399198	+	979.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1924.0	NM_001272040	74854.0	Mm.159338	NM_001080709	ENSMUSG00000079421	4930402F06Rik	-	RIKEN cDNA 4930402F06 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-111337772-7	chr8	111337697	111337897	+	952.7023929999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310613, intron 1 of 10)	intron (NM_001310613, intron 1 of 10)	408.0	NM_001310613	74568.0	Mm.207971	NM_029005	ENSMUSG00000012519	Mlkl	9130019I15Rik	mixed lineage kinase domain-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-51128377-2	chr14	51128277	51128477	+	659.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030098)	promoter-TSS (NM_030098)	-660.0	NM_030098	78416.0	Mm.103835	NM_030098	ENSMUSG00000021880	Rnase6	9530043P15Rik|BB119466	ribonuclease, RNase A family, 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-19154480-2	chr5	19154380	19154580	+	586.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR17|LTR|ERVK	72075.0	NR_102341	70832.0	Mm.398993	NR_102341	ENSMUSG00000097626	4921504A21Rik	-	RIKEN cDNA 4921504A21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-36562975-1	chr5	36562875	36563075	+	1000.0	f0_balb.idr	intron (NM_133910, intron 2 of 13)	intron (NM_133910, intron 2 of 13)	19422.0	NM_133910	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	1.79647849426596	2.71044471858321	1.29421357318286	1.629303967742	1.92250655357817	2.39883583038027	1.04248939737871	1.01837048523215	-0.594978359591452	0.611742411535676	0.975978820316538
Merged-chr14-62908494-2	chr14	62908394	62908594	+	643.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175546, intron 3 of 11)	MTC|LTR|ERVL-MaLR	42952.0	NR_105860	102465311.0		NR_105860	ENSMUSG00000098858	Mir6541	Gm27311|mmu-mir-6541	microRNA 6541	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-74909707-2	chr15	74909607	74909807	+	776.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28003.0	NM_025929	67038.0	Mm.154566	NM_025929	ENSMUSG00000063522	2010109I03Rik	Ly6m	RIKEN cDNA 2010109I03 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-61753921-2	chr9	61753821	61754021	+	969.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	160589.0	NM_018853	56040.0	Mm.3158	NM_018853	ENSMUSG00000007892	Rplp1	2410042H16Rik|Arpp1|C430017H15Rik	ribosomal protein, large, P1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-8901259-4	chr12	8901124	8901324	+	938.033325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20083.0	NM_008640	17775.0	Mm.30071	NM_008640	ENSMUSG00000020585	Laptm4a	AA286466|LAPTM4|MTP|Mtrp|mKIAA0108	lysosomal-associated protein transmembrane 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-88496566-3	chr5	88496459	88496659	+	728.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017468, intron 8 of 9)	L1M2|LINE|L1	8584.0	NM_017468	13801.0	Mm.8014	NM_017468	ENSMUSG00000029286	Enam	abte	enamelin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-19724162-3	chr5	19724040	19724240	+	863.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170746, intron 2 of 22)	intron (NM_001170746, intron 2 of 22)	-183378.0	NM_001170745	50791.0	Mm.332231	NM_015823	ENSMUSG00000040003	Magi2	AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705	membrane associated guanylate kinase, WW and PDZ domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-121350562-2	chr10	121350464	121350664	+	590.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361015, intron 1 of 12)	intron (NM_001361015, intron 1 of 12)	1080.0	NM_001361015	74694.0	Mm.233833	NM_029057	ENSMUSG00000052302	Tbc1d30	4930505D03Rik|9530013E20Rik	TBC1 domain family, member 30	protein-coding	-0.456345685972922	-0.444254375693871	-0.122132500023177	-0.451277070092221	-0.455592161526835	-0.443359786331104	0.233189308238463	-0.284073040549192	1.58612330612434	0.538264097870324	1
Merged-chr16-91853717-4	chr16	91853570	91853770	+	988.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110275, intron 21 of 28)	intron (NM_001110275, intron 21 of 28)	77960.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5596102-2	chr17	5596002	5596202	+	775.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	103502.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-66145287-2	chr13	66145187	66145387	+	600.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31834.0	NM_001177832	628709.0	Mm.390595	NM_001177832	ENSMUSG00000095909	Gm10324	-	predicted gene 10324	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-4077726-2	chr10	4077626	4077826	+	631.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001170785, intron 20 of 27)	intron (NM_001170785, intron 20 of 27)	104651.0	NM_172308	270685.0	Mm.184752	NM_172308	ENSMUSG00000040675	Mthfd1l	2410004L15Rik|AI647056|Fthfsdc1	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35023880-4	chr17	35023770	35023970	+	933.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001347347, exon 13 of 17)	exon (NM_001347347, exon 13 of 17)	4146.0	NR_028258	78376.0	Mm.390966	NM_023893	ENSMUSG00000036185	Sapcd1	2810436B06Rik|G7d|Ng23	suppressor APC domain containing 1	protein-coding	2.30232980553968	1.52617616386356	1.84122505696303	2.25534686942525	2.32163014350486	1.28192979810643	1.8549451485375	2.35736207119015	0.0218526376933123	0.982720084991053	0.998431161219273
Merged-chr11-72796153-4	chr11	72796056	72796256	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001045536)	promoter-TSS (NM_001045536)	-70.0	NM_001045536	195018.0	Mm.272030	NM_001045536	ENSMUSG00000055670	Zzef1	8430405D05Rik|BC051585|C130099L13Rik|C85424|NSPA|mKIAA0399	zinc finger, ZZ-type with EF hand domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-105771393-2	chr1	105771293	105771493	+	655.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B2-int|LTR|ERVL-MaLR	-9330.0	NM_009399	21934.0	Mm.6251	NM_009399	ENSMUSG00000026321	Tnfrsf11a	Ly109|ODFR|OFE|Rank|TRANCE-R|mRANK	tumor necrosis factor receptor superfamily, member 11a, NFKB activator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-122122266-4	chr3	122122169	122122369	+	958.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007378, intron 19 of 49)	intron (NM_007378, intron 19 of 49)	77809.0	NM_007378	11304.0	Mm.3918	NM_007378	ENSMUSG00000028125	Abca4	AW050280|Abc10|Abcr|D430003I15Rik|RmP	ATP-binding cassette, sub-family A (ABC1), member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19694813-2	chr7	19694713	19694913	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2154.0	NM_007469	11812.0	Mm.182440	NM_007469	ENSMUSG00000040564	Apoc1	Apo-CIB|ApoC-IB|apo-CI|apoC-I	apolipoprotein C-I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-37490507-4	chr7	37490409	37490609	+	925.6749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172385, intron 5 of 5)	intron (NM_172385, intron 5 of 5)	279243.0	NM_172385	243937.0	Mm.322505	NM_172385	ENSMUSG00000043456	Zfp536	9630010P11Rik|Znf536|mKIAA0390	zinc finger protein 536	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-92697047-4	chr1	92696952	92697152	+	840.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48211.0	NM_153114	260301.0	Mm.219545	NM_153114	ENSMUSG00000044055	Otos	OTOSP	otospiralin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35421087-2	chr17	35420987	35421187	+	763.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3760.0	NM_023124	15019.0	Mm.486287	NM_023124		H2-Q8	H-2Q8|MMS10-T|Ms10t|Qa-2|Qa-8|Qa8	histocompatibility 2, Q region locus 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-45587401-3	chr4	45587281	45587481	+	602.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52555.0	NR_151513	100040557.0	Mm.383510	NR_151513	ENSMUSG00000085980	Gm12408	-	predicted gene 12408	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-60148291-2	chr10	60148191	60148391	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21515.0	NR_105871	102465546.0		NR_105871	ENSMUSG00000105468	Mir6906	mmu-mir-6906	microRNA 6906	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127619377-4	chr10	127619286	127619486	+	926.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 1 of 88)	intron (NM_008512, intron 1 of 88)	1762.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-75822192-2	chr13	75822082	75822282	+	603.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR11A|LTR|ERVK	-17703.0	NM_001360151	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	-0.67244268220765	-0.315413924930817	-0.665829833875067	-0.66832098558864	-0.529401970000288	-0.17118318934554	-0.665116553147273	-0.66788623450703	1.04184315796982	0.704381454801223	1
Merged-chr11-20434229-1	chr11	20434129	20434329	+	767.0	f1_c57bl6.idr	Intergenic	RodERV21-int|LTR|ERV1	-101516.0	NM_018861	55963.0	Mm.6379	NM_018861	ENSMUSG00000020142	Slc1a4	ASCT-1|ASCT1|AW045657|SATT	solute carrier family 1 (glutamate/neutral amino acid transporter), member 4	protein-coding	1.71986744228606	2.85773459493435	0.806368257868885	1.43142578470962	0.993539952117057	1.72810567375962	0.812179849865286	1.05046274089803	-2.10049688717427	0.0970800441814942	0.483974946020596
Merged-chr2-166703133-3	chr2	166703027	166703227	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	10705.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-70831815-4	chr17	70831726	70831926	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	14951.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-113484324-4	chr13	113484227	113484427	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045501, intron 3 of 6)	intron (NR_045501, intron 3 of 6)	18517.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53429477-2	chr4	53429370	53429570	+	959.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-10943.0	NM_001159633	100434.0	Mm.482207	NM_133891	ENSMUSG00000028412	Slc44a1	2210409B22Rik|4833416H08Rik|AW547365|CHTL1|CTL1|Cdw92	solute carrier family 44, member 1	protein-coding	1.33682294733841	2.2491555162543	0.721976172892308	0.706924127810715	1.90388190653796	0.745085441339732	1.17742473779301	0.943427283990248	-0.479600008972826	0.73847692770198	0.998431161219273
Merged-chr3-138953799-1	chr3	138953699	138953899	+	578.0	f1_c57bl6.idr	intron (NM_001356388, intron 11 of 13)	MTB_Mm|LTR|ERVL-MaLR	121402.0	NM_145544	229877.0	Mm.28893	NM_145544	ENSMUSG00000028149	Rap1gds1	BC011279|GDS1	RAP1, GTP-GDP dissociation stimulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133177040-3	chr4	133176958	133177158	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153423, intron 2 of 8)	intron (NM_153423, intron 2 of 8)	-18597.0	NR_105984	102466215.0		NR_105984	ENSMUSG00000099202	Mir7017	Gm27945|mmu-mir-7017	microRNA 7017	ncRNA	2.92965961739792	2.39436510470144	2.87941151767255	1.82609251342441	3.8509449899661	3.00499404994178	3.44581845057671	3.34240927605517	1.50537782800618	0.02563885879126	0.213192363103949
Merged-chr7-118855751-4	chr7	118855657	118855857	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001168220)	promoter-TSS (NM_001168220)	-18.0	NM_001081446	434232.0	Mm.458509	NM_001081446	ENSMUSG00000073856	Iqck	A230094G09Rik	IQ motif containing K	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-87442884-4	chr11	87442793	87442993	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199293, intron 2 of 30)	CpG	15302.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-57576376-4	chr8	57576229	57576429	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167981, intron 2 of 11)	Tigger9a|DNA|TcMar-Tigger	64486.0	NM_008252	97165.0	Mm.276881	NM_008252	ENSMUSG00000054717	Hmgb2	C80539|HMG-2|Hmg2	high mobility group box 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-103421206-3	chr3	103421087	103421287	+	594.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	141894.0	NM_053170	94093.0	Mm.195036	NM_053170	ENSMUSG00000033014	Trim33	8030451N04Rik|AI413936|Ecto|Tif1g	tripartite motif-containing 33	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140336479-2	chr5	140336379	140336579	+	773.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356584, intron 4 of 4)	intron (NM_001356584, intron 4 of 4)	4523.0	NM_001356584	17766.0	Mm.118846	NM_008637	ENSMUSG00000036639	Nudt1	Mth1	nudix (nucleoside diphosphate linked moiety X)-type motif 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-44931570-4	chr19	44931444	44931644	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172638, intron 1 of 19)	CpG	425.0	NM_001081225	226151.0	Mm.212609	NM_172638	ENSMUSG00000036097	Slf2	3632432H19|Fam178a	SMC5-SMC6 complex localization factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-103672812-4	chr2	103672649	103672849	+	880.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178890, intron 1 of 16)	intron (NM_178890, intron 1 of 16)	88521.0	NM_153126	98956.0	Mm.288005	NM_153126	ENSMUSG00000027185	Nat10	AI429152	N-acetyltransferase 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-160212298-2	chr1	160212198	160212398	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009786, intron 1 of 5)	intron (NM_009786, intron 1 of 5)	594.0	NM_009786	12301.0	Mm.10702	NM_009786	ENSMUSG00000014226	Cacybp	SIP	calcyclin binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-68062476-4	chr8	68062367	68062567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-87893.0	NM_177698	234353.0	Mm.32525	NM_027626	ENSMUSG00000030465	Psd3	4931420C21Rik|AI661273|BC003498|D430018P08|EFA6D	pleckstrin and Sec7 domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-54603480-4	chr14	54603388	54603588	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028890, intron 1 of 6)	CpG	2420.0	NM_028890	74359.0	Mm.79815	NM_028890	ENSMUSG00000022179	4931414P19Rik	Rtfc	RIKEN cDNA 4931414P19 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-84592950-4	chr2	84592840	84593040	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56540.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	3.02434413226771	2.11642437965148	1.51980136351449	3.18949520800643	2.97346912312851	3.33840625795408	2.42923684787428	3.88319959376015	1.0734401999625	0.171206260734077	0.638755914366425
Merged-chr2-121867150-3	chr2	121867155	121867355	+	913.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001205371)	promoter-TSS (NM_001205371)	285.0	NM_001205369	319996.0	Mm.292109	NM_177054	ENSMUSG00000060227	Casc4	D130060C09Rik|VGFG2573	cancer susceptibility candidate 4	protein-coding	0.00837837166741023	0.729621162011376	1.06367867239626	0.0185654978353558	0.00990468610444745	0.262384914302596	0.0263422278737258	0.0196277328741524	-3.41624486561912	0.110309959156891	1
Merged-chr5-137103077-3	chr5	137102953	137103153	+	850.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13154.0	NM_201373	384309.0	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117221770-2	chr10	117221670	117221870	+	670.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026570, intron 2 of 6)	intron (NM_026570, intron 2 of 6)	2737.0	NM_026570	64050.0	Mm.233529	NM_026570	ENSMUSG00000020171	Yeats4	4930573H17Rik|B230215M10Rik|GAS41|NuBI-1	YEATS domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-48869350-2	chr13	48869250	48869450	+	682.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011078, intron 1 of 21)	intron (NM_011078, intron 1 of 21)	1535.0	NM_011078	18676.0	Mm.486213	NM_011078	ENSMUSG00000038025	Phf2	GRC5	PHD finger protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-144940365-4	chr7	144940242	144940442	+	990.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007631)	promoter-TSS (NM_007631)	-417.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	3.20456206957537	3.28971530315122	2.24439529800973	2.60777684891337	2.87878992402916	3.39373878436196	1.5618843784814	3.10762689606355	-0.0195769846876755	0.97996032299478	0.998431161219273
Merged-chr7-141091862-2	chr7	141091762	141091962	+	597.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_023059, exon 9 of 10)	exon (NM_023059, exon 9 of 10)	8684.0	NM_023059	24058.0	Mm.38017	NM_023059	ENSMUSG00000025494	Sigirr	AI256711|TIR8	single immunoglobulin and toll-interleukin 1 receptor (TIR) domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-127363138-3	chr2	127363080	127363280	+	717.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009633)	promoter-TSS (NM_009633)	-106.0	NM_009633	11552.0	Mm.347390	NM_009633	ENSMUSG00000058620	Adra2b	Adra-2b|[a]2B|a2b-AR|alpha2-C2|alpha2B	adrenergic receptor, alpha 2b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-30773059-3	chr11	30772999	30773199	+	858.694458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134013, intron 1 of 46)	intron (NM_134013, intron 1 of 46)	1324.0	NM_134013	103554.0	Mm.240066	NM_134013	ENSMUSG00000040850	Psme4	AA409398|AU041366|TEMO|mKIAA0077	proteasome (prosome, macropain) activator subunit 4	protein-coding	0.844425160089343	0.939747655875161	0.695065936672266	0.684336828192181	1.13525516350371	1.86282539250228	1.38046002079946	1.32853376019688	3.3888854334035	0.0247042515493043	0.207661100015333
Merged-chr5-16552801-4	chr5	16552706	16552906	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010427)	promoter-TSS (NM_010427)	-689.0	NM_001289460	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-82366969-3	chr12	82366895	82367095	+	871.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167983, intron 7 of 23)	intron (NM_001167983, intron 7 of 23)	55646.0	NM_172579	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-40713376-1	chr9	40713276	40713476	+	694.833313	f0_balb.idr	intron (NM_133733, intron 1 of 6)	intron (NM_133733, intron 1 of 6)	27412.0	NM_133733	71566.0	Mm.280560	NM_133733	ENSMUSG00000032024	Clmp	9030425E11Rik|ACAM|ASP5|AW557819	CXADR-like membrane protein	protein-coding	1.12713172391681	1.26005655757809	2.37175697739307	1.1861202476643	2.91908055192927	2.81383114853602	3.10639290596457	2.52927523636116	2.91760456819155	0.00380416631121486	0.0541190077260347
Merged-chr3-95644385-2	chr3	95644285	95644485	+	615.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-14336.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-28698821-4	chr2	28698730	28698930	+	992.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027283, intron 1 of 4)	MIR3|SINE|MIR	821.0	NM_027283	69987.0	Mm.239376	NM_027283	ENSMUSG00000026809	Spaca9	1700026L06Rik|MAST	sperm acrosome associated 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-74142074-1	chr9	74141974	74142174	+	610.0	f0_balb.idr	intron (NM_001033500, intron 3 of 19)	MER20|DNA|hAT-Charlie	31740.0	NM_001033500	546144.0	Mm.335289	NM_177908	ENSMUSG00000044976	Wdr72	AW558070|D230040E23	WD repeat domain 72	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-27179334-2	chr3	27179234	27179434	+	713.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3670.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-121210778-4	chr6	121210733	121210933	+	783.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017379)	promoter-TSS (NM_017379)	99.0	NM_017379	53857.0	Mm.32884	NM_017379	ENSMUSG00000030137	Tuba8	-	tubulin, alpha 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-76306349-4	chr12	76306258	76306458	+	977.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138745, intron 21 of 27)	intron (NM_138745, intron 21 of 27)	-18533.0	NM_001101471	238276.0	Mm.311452	NM_001101471	ENSMUSG00000021057	Akap5	3526401B18Rik|AKAP 150|AKAP-5|AKAP150|BB098886|Gm258|P150	A kinase (PRKA) anchor protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111294373-1	chr12	111294273	111294473	+	550.0	f1_c57bl6.idr	intron (NM_183016, intron 36 of 36)	intron (NM_183016, intron 36 of 36)	23277.0	NM_033603	93835.0	Mm.197639	NM_033603	ENSMUSG00000021278	Amn	-	amnionless	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-55734527-4	chr16	55734419	55734619	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	87619.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-31812389-4	chr11	31812298	31812498	+	989.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_102312, intron 1 of 4)	intron (NR_102312, intron 1 of 4)	12149.0	NR_102310	414116.0	Mm.150222	NR_102310	ENSMUSG00000085772	D630024D03Rik	-	RIKEN cDNA D630024D03 gene	ncRNA	2.03961890219349	2.71106225257315	2.0530036005961	2.55754963208818	2.271064233865	2.41382582923417	2.06704854888157	2.37985853562885	-0.210632805774217	0.798169798127218	0.998431161219273
Merged-chr11-23657935-4	chr11	23657831	23658031	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023651, intron 1 of 3)	intron (NM_023651, intron 1 of 3)	-7743.0	NM_028956	74467.0	Mm.29536	NM_028304	ENSMUSG00000020280	Pus10	2810013G11Rik|4933435A13Rik|AU014648|C77560|Ccdc139	pseudouridylate synthase 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-12254456-2	chr17	12254356	12254556	+	578.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357722, intron 10 of 25)	intron (NM_001357722, intron 10 of 25)	64204.0	NM_011948	26407.0	Mm.28587	NM_011948	ENSMUSG00000014426	Map3k4	D17Rp17|D17Rp17e|MAPKKK4|MEKK 4|MTK1|Mek4b|Mekk4|RP17|Rp17a|Tas|mKIAA0213	mitogen-activated protein kinase kinase kinase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-115587131-2	chr10	115587031	115587231	+	693.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010195, intron 1 of 17)	intron (NM_010195, intron 1 of 17)	649.0	NM_010195	14160.0	Mm.42103	NM_010195	ENSMUSG00000020140	Lgr5	FEX|Gpr49	leucine rich repeat containing G protein coupled receptor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-11996059-4	chr15	11995970	11996170	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011294)	promoter-TSS (NM_011294)	-63.0	NM_011294	20024.0	Mm.41746	NM_011294	ENSMUSG00000022205	Sub1	AI842364|P15|P9|Pc4|Rpo2tc1	SUB1 homolog (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-103654345-2	chr5	103654245	103654445	+	583.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028824, intron 2 of 3)	B3|SINE|B2	1379.0	NM_028824	74218.0	Mm.159141	NM_028824	ENSMUSG00000029320	1700016H13Rik	-	RIKEN cDNA 1700016H13 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-143142478-4	chr6	143142398	143142598	+	819.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153819, intron 5 of 8)	intron (NR_153819, intron 5 of 8)	11433.0	NR_153819	102633311.0	Mm.333484	NR_153819		Gm31108	Gm31169	predicted gene, 31108	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-103178320-4	chr11	103178204	103178404	+	980.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019679, intron 1 of 26)	intron (NM_019679, intron 1 of 26)	7166.0	NM_019679	57778.0	Mm.138913	NM_019679	ENSMUSG00000055805	Fmnl1	8030453N10Rik|AI553564|Fmnl|Fnrl|Frls	formin-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-94948556-2	chr9	94948456	94948656	+	575.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177909, intron 8 of 15)	MTE2a|LTR|ERVL-MaLR	196727.0	NR_106116	102465763.0		NR_106116	ENSMUSG00000098251	Mir7656	Gm27614|mmu-mir-7656	microRNA 7656	ncRNA	-1.23693357297106	-1.04025094496409	-0.762497807208132	-1.22933063607209	-1.23646356211451	-1.20737974486957	-1.21804564851308	-1.22774704973383	-2.53719312693895	0.438060107335038	1
Merged-chr17-87219900-2	chr17	87219800	87220000	+	650.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24958.0	NR_046016	399626.0	Mm.396062	NR_046016		C330024C12Rik	-	RIKEN cDNA C330024C12 gene	ncRNA	-0.314002700711137	0.369667453767163	-0.302657624084878	-0.306904050280196	-0.312942747993347	0.497078768976574	-0.301447679479687	-0.30616063073298	0.368521121868337	0.885492907230206	1
Merged-chr3-116836170-4	chr3	116836043	116836243	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23424.0	NM_001113478	20321.0	Mm.66293	NM_009146	ENSMUSG00000033386	Frrs1	AI131732|Sdfr2	ferric-chelate reductase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128203303-4	chr2	128203194	128203394	+	798.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	75719.0	NM_001284410	12125.0	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-106428234-1	chr9	106428134	106428334	+	573.0	f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-1177.0	NM_001324533	19944.0	Mm.288696	NM_009082	ENSMUSG00000048758	Rpl29	Rpl43	ribosomal protein L29	protein-coding	0.787376123218143	2.17496756587647	0.601844323782965	2.34282330861526	1.29757185879312	0.628853491699193	0.606813043002628	0.587215411991281	-2.9253790139442	0.0552399347995118	0.345445681045366
Merged-chr4-147127284-2	chr4	147127184	147127384	+	556.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER21B|LTR|ERV1	-48582.0	NM_001039209	195531.0	Mm.270762	NM_001039209	ENSMUSG00000078496	Zfp982	Gm13152	zinc finger protein 982	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-85482024-4	chr8	85481921	85482121	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10596.0	NM_173866	108682.0	Mm.200423	NM_173866	ENSMUSG00000031700	Gpt2	4631422C05Rik|ALT2|AU014768|AU041193|C87201	glutamic pyruvate transaminase (alanine aminotransferase) 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-18469286-2	chr6	18469186	18469386	+	660.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_149735, intron 2 of 22)	intron (NR_149735, intron 2 of 22)	45583.0	NM_080285	30785.0	Mm.224189	NM_080285	ENSMUSG00000000416	Cttnbp2	3010022N24Rik|4732477G22Rik|6430526E05|9130022E09Rik|AU040881|Cortbp2|ORF4|mKIAA1758	cortactin binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-120347072-2	chr2	120346972	120347172	+	911.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_147153, intron 2 of 25)	intron (NM_147153, intron 2 of 25)	6061.0	NR_027618	269338.0	Mm.246131	NM_147153	ENSMUSG00000027291	Vps39	A230065P22Rik|AW743070|Vam6|Vam6P|mVam6	VPS39 HOPS complex subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-92061874-4	chr1	92061776	92061976	+	973.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207225, intron 2 of 26)	intron (NM_207225, intron 2 of 26)	118465.0	NM_207225	208727.0	Mm.318567	NM_207225	ENSMUSG00000026313	Hdac4	4932408F19Rik|HD4	histone deacetylase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83534860-4	chr11	83534765	83534965	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4347.0	NM_013653	20304.0	Mm.284248	NM_013653	ENSMUSG00000035042	Ccl5	MuRantes|RANTES|SISd|Scya5|TCP228	chemokine (C-C motif) ligand 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-77904918-2	chr10	77904818	77905018	+	833.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC|LINE|L1	-2382.0	NM_145152	237387.0	Mm.133301	NM_145152	ENSMUSG00000051652	Lrrc3	1300011L04Rik|C21orf102	leucine rich repeat containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-100041768-4	chr15	100041638	100041838	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159361, intron 1 of 37)	intron (NM_001159361, intron 1 of 37)	3074.0	NM_001159361	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-181210671-2	chr2	181210571	181210771	+	632.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011481, intron 1 of 7)	intron (NM_011481, intron 1 of 7)	2500.0	NM_011481	20811.0	Mm.4752	NM_011481	ENSMUSG00000027579	Srms	A230069J08Rik|srm	src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-41575334-4	chr3	41575244	41575444	+	870.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001130186, intron 1 of 10)	intron (NM_001130186, intron 1 of 10)	10464.0	NM_001130186	269424.0	Mm.286285	NM_172303	ENSMUSG00000025764	Jade1	AU041499|D530048A03Rik|Phf17|mKIAA1807	jade family PHD finger 1	protein-coding	2.86739403471193	1.31163323273223	1.54245906147607	3.0806979911613	2.63335606107604	2.19789606161691	1.55400345720713	2.18780010615994	-0.513406324607854	0.606228621961221	0.974576632476413
Merged-chr17-88557257-4	chr17	88557158	88557358	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028658, intron 9 of 21)	intron (NM_028658, intron 9 of 21)	27134.0	NM_028658	73825.0	Mm.271817	NM_028658	ENSMUSG00000034709	Ppp1r21	1110018J12Rik|AI426045|AW550781|Ccdc128|Klraq1	protein phosphatase 1, regulatory subunit 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-126489934-4	chr4	126489807	126490007	+	996.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_153177, exon 18 of 18)	3' UTR (NM_153177, exon 18 of 18)	-21324.0	NM_153403	236511.0	Mm.30800	NM_153403	ENSMUSG00000041530	Ago1	Eif2c1	argonaute RISC catalytic subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99295106-4	chr15	99295041	99295241	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018786)	promoter-TSS (NM_018786)	-100.0	NM_018786	54614.0	Mm.358668	NM_018786	ENSMUSG00000023007	Prpf40b	2610317D23Rik|Hypc	pre-mRNA processing factor 40B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-145142161-1	chr6	145142061	145142261	+	622.0	f1_balb.idr	intron (NM_008511, intron 3 of 18)	intron (NM_008511, intron 3 of 18)	-3314.0	NM_001361633	16970.0	Mm.843	NM_008511	ENSMUSG00000030263	Lrmp	D6Int3|D6Int4|D6Int5|D6Int7|D6Int8|Jaw1	lymphoid-restricted membrane protein	protein-coding	1.65253009653808	0.953143684673309	1.58974563014132	1.54274945762367	1.23245982804263	0.956495680742664	1.82064244714324	1.55105263243957	-0.103519097619276	0.934702379044114	0.998431161219273
Merged-chr4-59565990-4	chr4	59565898	59566098	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	-15565.0	NM_001301367	72479.0	Mm.272905	NM_024255	ENSMUSG00000028383	Hsdl2	2610207I16Rik	hydroxysteroid dehydrogenase like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-8510408-4	chr6	8510374	8510574	+	805.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133236, intron 1 of 7)	intron (NM_133236, intron 1 of 7)	874.0	NM_133236	170772.0	Mm.210787	NM_133236	ENSMUSG00000029638	Glcci1	2310047L21Rik|A130036A18Rik|Fam117c|Gig18|Tssn1	glucocorticoid induced transcript 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-35112358-2	chr9	35112258	35112458	+	806.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009178, intron 1 of 10)	intron (NM_009178, intron 1 of 10)	-4370.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5977646-2	chr17	5977546	5977746	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_151772, intron 2 of 25)	intron (NR_151772, intron 2 of 25)	2060.0	NM_011523	20975.0	Mm.236068	NM_011523	ENSMUSG00000023805	Synj2	AI481647|SJ2|mKIAA0348	synaptojanin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-25760605-1	chr5	25760505	25760705	+	587.0	f0_balb.idr	intron (NM_001310504, intron 1 of 10)	intron (NM_001310504, intron 1 of 10)	632.0	NM_001004365	242894.0	Mm.150319	NM_001004365	ENSMUSG00000056367	Actr3b	9630005C02|ARP11|AW047569|Arp3b|Arp3beta	ARP3 actin-related protein 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-145139983-2	chr4	145139883	145140083	+	857.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001276465, intron 24 of 69)	Lx8|LINE|L1	50683.0	NM_001276502	230895.0	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-8628318-2	chr8	8628218	8628418	+	873.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010111, intron 2 of 4)	intron (NM_010111, intron 2 of 4)	32455.0	NM_010111	13642.0	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-29462061-2	chr19	29461961	29462161	+	946.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_021396, intron 5 of 5)	B1_Mm|SINE|Alu	51142.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-69360006-2	chr12	69359906	69360106	+	728.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	-2830.0	NM_025441	66244.0	Mm.46705	NM_025441	ENSMUSG00000020982	Nemf	1500011I12Rik|4933405E14Rik|Sdccag1	nuclear export mediator factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70718538-5	chr8	70718477	70718677	+	997.2666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001195253)	promoter-TSS (NM_001195253)	34.0	NM_001195253	100502950.0	Mm.52981	NM_001195253	ENSMUSG00000095026	Gm3336	100041434|2410018E23Rik	predicted gene 3336	protein-coding	2.89429945337168	2.88160968459388	3.33920910918362	2.94725753453697	3.64675264279715	3.47894437321201	3.98608003853838	3.63925143819357	1.0779671313494	0.0507934170600273	0.328115264475704
Merged-chr16-89833759-1	chr16	89833659	89833859	+	659.5	f0_balb.idr	intron (NM_009384, intron 14 of 27)	intron (NM_009384, intron 14 of 27)	-15407.0	NM_001145887	21844.0	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78258439-4	chr15	78258345	78258545	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008677, intron 7 of 9)	intron (NM_008677, intron 7 of 9)	13634.0	NM_008677	17972.0	Mm.2068	NM_008677	ENSMUSG00000071715	Ncf4	AI451400|p40phox	neutrophil cytosolic factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81608130-2	chr10	81608030	81608230	+	753.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_030677, intron 2 of 2)	B1_Mm|SINE|Alu	1822.0	NR_030677	268319.0	Mm.131825	NM_001033363	ENSMUSG00000074862	BC025920	-	zinc finger protein pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150473775-4	chr4	150473576	150473776	+	952.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 6 of 22)	intron (NM_001085492, intron 6 of 22)	178498.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-21707701-4	chr17	21707624	21707824	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001008501)	promoter-TSS (NM_001008501)	-17.0	NM_001008501	240034.0	Mm.34723	NM_001008501	ENSMUSG00000067928	Zfp760	9430018I06|BC029103	zinc finger protein 760	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-109959757-4	chr7	109959655	109959855	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021494, intron 1 of 22)	intron (NM_021494, intron 1 of 22)	667.0	NM_021494	19347.0	Mm.21904	NM_021494	ENSMUSG00000035901	Dennd5a	1500012B19Rik|AJ245569|AW496491|ORF37|Rab6ip1|mKIAA1091	DENN/MADD domain containing 5A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-32159177-4	chr16	32159067	32159267	+	888.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347181, intron 1 of 2)	intron (NM_001347181, intron 1 of 2)	6427.0	NM_146069	224109.0	Mm.33498	NM_146069	ENSMUSG00000052384	Nrros	E430025L02Rik|Lrcc33|Lrrc33	negative regulator of reactive oxygen species	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-17998954-2	chr5	17998854	17999054	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081143, intron 3 of 7)	intron (NM_001081143, intron 3 of 7)	36384.0	NM_001081143	242851.0	Mm.332230	NM_001081143	ENSMUSG00000028777	Gnat3	Ggust|Gtn	guanine nucleotide binding protein, alpha transducing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-81572175-4	chr18	81572082	81572282	+	931.520874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	419898.0	NR_039589	100628596.0		NR_039589	ENSMUSG00000093036	Mir5127	mmu-mir-5127|mu-mir-5127	microRNA 5127	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-156328525-2	chr2	156328425	156328625	+	608.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027585, intron 3 of 12)	intron (NM_027585, intron 3 of 12)	-15821.0	NM_020255	19018.0	Mm.389346	NM_020255	ENSMUSG00000046229	Scand1	2310003H23Rik|Leap1|PGC-2|Ppargc2	SCAN domain-containing 1	protein-coding	-1.05877568042897	-1.03501312238488	-1.04817210678232	-1.05426068996071	-1.05810152525527	-1.03216151557194	-0.188696606725984	-1.05378786495764	3.16074139804981	0.330468818528456	1
Merged-chr16-16558087-3	chr16	16558025	16558225	+	854.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301817, intron 1 of 16)	intron (NM_001301817, intron 1 of 16)	2094.0	NM_139232	224014.0	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-90363249-2	chr5	90363149	90363349	+	602.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198010, intron 1 of 32)	intron (NM_198010, intron 1 of 32)	2936.0	NM_030886	81702.0	Mm.245522	NM_030886	ENSMUSG00000055204	Ankrd17	4933425K22Rik|A130069E23Rik|A930008M01|AA407558|AA516750|AU040470|Foe|Gtar|Mask|mKIAA0697	ankyrin repeat domain 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3235386-4	chr12	3235299	3235499	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015551)	promoter-TSS (NR_015551)	-392.0	NR_015551	74173.0	Mm.309774	NM_028796	ENSMUSG00000079179	Rab10os	1700012B15Rik|1810036A22Rik	RAB10, member RAS oncogene family, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-31296189-3	chr17	31295982	31296182	+	918.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001242427)	promoter-TSS (NM_001242427)	-142.0	NM_001242427	224674.0	Mm.311395	NM_153062	ENSMUSG00000024036	Slc37a1	G3PP	solute carrier family 37 (glycerol-3-phosphate transporter), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-33246903-4	chr4	33246801	33247001	+	897.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033225, intron 1 of 1)	intron (NM_001033225, intron 1 of 1)	1886.0	NM_001033225	108767.0	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-146521201-8	chr3	146521127	146521327	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027332, exon 1 of 5)	exon (NM_027332, exon 1 of 5)	196.0	NM_027332	70285.0	Mm.28128	NM_027332	ENSMUSG00000028187	Rpf1	2210420E24Rik|2310066N05Rik|Bxdc5	ribosome production factor 1 homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-54939938-4	chr6	54939828	54940028	+	888.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001171007, intron 4 of 11)	intron (NM_001171007, intron 4 of 11)	31733.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-40947915-2	chr3	40947815	40948015	+	903.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2716.0	NM_001040399	214048.0	Mm.46782	NM_027663	ENSMUSG00000025762	Larp1b	1700108L22Rik|4933421B21Rik|AA690246|Larp2	La ribonucleoprotein domain family, member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-137079990-4	chr5	137079891	137080091	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7719.0	NM_008871	18787.0	Mm.250422	NM_008871	ENSMUSG00000037411	Serpine1	PAI-1|PAI1|Planh1	serine (or cysteine) peptidase inhibitor, clade E, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-38537102-2	chr15	38537002	38537202	+	728.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17836.0	NM_018745	54375.0	Mm.250214	NM_018745	ENSMUSG00000037458	Azin1	1700085L02Rik|AZI|Oazi|Oazin	antizyme inhibitor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-45919818-4	chr5	45919712	45919912	+	879.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Arthur1|DNA|hAT-Tip100	12597.0	NR_110478	78106.0	Mm.243807	NR_110478	ENSMUSG00000106602	4930405L22Rik	-	RIKEN cDNA 4930405L22 gene	ncRNA	3.6067164738368	4.17316941128339	3.59686794052106	4.20577182740617	3.76433276779483	4.43311392612071	2.78700674597666	4.5320446811203	0.157847663222883	0.763321547182942	0.998431161219273
Merged-chr10-67062051-2	chr10	67061951	67062151	+	822.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_178606, intron 2 of 7)	intron (NM_178606, intron 2 of 7)	34937.0	NM_001204915	28193.0	Mm.41272	NM_178606	ENSMUSG00000019873	Reep3	D10Ucla1	receptor accessory protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-88710006-4	chr9	88709910	88710110	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359992, intron 2 of 2)	intron (NM_001359992, intron 2 of 2)	9577.0	NM_001359992	100039707.0	Mm.347377	NM_001128601	ENSMUSG00000079427	Mthfsl	Gm2382	5, 10-methenyltetrahydrofolate synthetase-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-47272935-2	chr4	47272835	47273035	+	588.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009928, intron 14 of 39)	intron (NM_009928, intron 14 of 39)	64923.0	NM_009928	12819.0	Mm.233547	NM_009928	ENSMUSG00000028339	Col15a1	-	collagen, type XV, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-19022769-2	chr11	19022669	19022869	+	702.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3800.0	NM_010789	17268.0	Mm.356578	NM_010789	ENSMUSG00000020160	Meis1	C530044H18Rik|Evi8	Meis homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-13046305-4	chr7	13046198	13046398	+	941.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290453, intron 5 of 6)	intron (NM_001290453, intron 5 of 6)	-8023.0	NM_001168469	22192.0	Mm.196580	NM_145578	ENSMUSG00000005575	Ube2m	2510040H03Rik|UBC12|Ubc-rs2	ubiquitin-conjugating enzyme E2M	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-14913502-4	chr3	14913399	14913599	+	988.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27211.0	NM_009801	12349.0	Mm.1186	NM_009801	ENSMUSG00000027562	Car2	AI131712|CAII|Ca2|Car-2|Ltw-5|Lvtw-5	carbonic anhydrase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-84183823-2	chr15	84183723	84183923	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_054088, intron 7 of 7)	RSINE1|SINE|B4	-8410.0	NM_178614	68653.0	Mm.290725	NM_178614	ENSMUSG00000022437	Samm50	1110030L07Rik	SAMM50 sorting and assembly machinery component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-89131276-2	chr4	89131176	89131376	+	582.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16_Mm|LTR|ERVK	-3050.0	NR_151607	102637941.0	Mm.366358	NR_151607		Gm12602	-	predicted gene 12602	ncRNA	-0.399969791190386	0.873616246925855	-0.385613901677598	-0.39095155253816	-0.0547978662485192	-0.37727509355853	-0.384100643709588	-0.390014060056782	-2.50000455240466	0.316750977269239	1
Merged-chr9-75414484-3	chr9	75414393	75414593	+	959.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040719, intron 3 of 3)	intron (NR_040719, intron 3 of 3)	4309.0	NR_040719	71274.0	Mm.399152	NR_040719	ENSMUSG00000097021	4933433G15Rik	4921522K19Rik	RIKEN cDNA 4933433G15 gene	ncRNA	3.94066406682829	4.54325454640811	4.86768929352847	3.85170318415615	2.50285444870415	3.17573383714721	4.11784730234222	3.6573872555283	-1.20979471801464	0.0232533055410952	0.198807477350636
Merged-chr17-86961729-3	chr17	86961599	86961799	+	897.0499880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1412.0	NM_145491	104215.0	Mm.826	NM_145491	ENSMUSG00000024143	Rhoq	Arhq|TC10A|Tc10	ras homolog family member Q	protein-coding	1.83025859812117	2.88563072642495	1.48052206966288	2.90628946149632	3.97759073676503	3.22068272303213	2.80634365748115	2.82290071007503	1.56952791060549	0.0459138475645396	0.309132627990654
Merged-chr11-101457086-2	chr11	101456986	101457186	+	545.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027320, intron 2 of 6)	intron (NM_027320, intron 2 of 6)	8674.0	NM_027320	70110.0	Mm.45558	NM_027320	ENSMUSG00000010358	Ifi35	2010008K16Rik|AW986054|IFP35|ifi-35	interferon-induced protein 35	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-119913798-2	chr1	119913698	119913898	+	781.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175106)	promoter-TSS (NM_175106)	-630.0	NM_175106	66343.0	Mm.49942	NM_175106	ENSMUSG00000036975	Tmem177	2300008B03Rik	transmembrane protein 177	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116080011-2	chr11	116079911	116080111	+	575.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361446, intron 5 of 6)	intron (NM_001361446, intron 5 of 6)	-2050.0	NM_001009573	70450.0	Mm.259460	NM_001009573	ENSMUSG00000057948	Unc13d	2610108D09Rik|Jinx|Munc13-4|mFLJ00067	unc-13 homolog D (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27710763-6	chr2	27710582	27710782	+	775.388916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290482)	promoter-TSS (NM_001290482)	99.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171060482-3	chr1	171060399	171060599	+	877.3999630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR9B|LTR|ERVK	-1096.0	NM_010188	14131.0	Mm.22119	NM_010188	ENSMUSG00000059498	Fcgr3	CD16	Fc receptor, IgG, low affinity III	protein-coding	-0.694715100270909	-0.0619549970237906	-0.687588246117985	-0.690268621584873	-0.306221209011159	-0.683328285024547	-0.686821754782012	-0.689800466692089	-0.890639573273157	0.760595300425877	1
Merged-chr16-8767136-2	chr16	8767036	8767236	+	706.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-28794.0	NM_001003918	252870.0	Mm.295330	NM_001003918	ENSMUSG00000022710	Usp7	2210010O09Rik|AA409944|AA617399|AU019296|AW548146|C80752|Hausp	ubiquitin specific peptidase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115510088-1	chr11	115509988	115510188	+	1000.0	f1_c57bl6.idr	intron (NM_008258, intron 1 of 4)	intron (NM_008258, intron 1 of 4)	4305.0	NM_008258	15374.0	Mm.1775	NM_008258	ENSMUSG00000020737	Jpt1	Hn1	Jupiter microtubule associated homolog 1	protein-coding	0.183219659148708	0.662744808399321	0.613099802296592	0.211150056159019	0.0434148298829505	0.0602465958641523	0.232566732008639	0.0500909791304666	-3.11323165974651	0.117280490524815	1
Merged-chr3-154885706-2	chr3	154885604	154885804	+	941.708374	f0_c57.idr|f1_c57bl6.idr	intron (NM_177066, intron 17 of 24)	intron (NM_177066, intron 17 of 24)	169703.0	NM_177066	435766.0	Mm.210428	NM_177066	ENSMUSG00000040086	Tnni3k	Cark|D830019J24Rik	TNNI3 interacting kinase	protein-coding	3.78627734018918	4.08071610161456	2.69078508980821	4.73082155627404	1.51906056012351	3.20544208945842	1.38544493358977	1.32207647450562	-3.02943866064135	0.0273778957273587	0.222746075916148
Merged-chr4-33018551-4	chr4	33018439	33018639	+	736.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027491, intron 6 of 6)	intron (NM_027491, intron 6 of 6)	12784.0	NR_036602	100504166.0	Mm.426309	NR_036602	ENSMUSG00000085037	4933421O10Rik	-	RIKEN cDNA 4933421O10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-84772065-4	chr3	84771962	84772162	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43515.0	NM_001177773	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	2.1351828041886	1.24350996487315	3.15524211190939	1.99982738079749	1.75429318659036	2.309842293139	3.05646085076022	1.1801087321892	-0.112641712787413	0.914702020103257	0.998431161219273
Merged-chr7-109307857-2	chr7	109307757	109307957	+	861.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355145, intron 10 of 10)	L1M3b|LINE|L1	-130761.0	NR_152110	74293.0	Mm.381252	NR_152110	ENSMUSG00000085407	1700095J03Rik	-	RIKEN cDNA 1700095J03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-97188058-2	chr15	97187958	97188158	+	616.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20814.0	NR_155279	102635594.0	Mm.392594	NR_155278	ENSMUSG00000116295	Gm32885	-	predicted gene, 32885	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-133986238-1	chr6	133986138	133986338	+	822.5	f1_balb.idr	Intergenic	Intergenic	-49462.0	NM_001303102	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	0.142279817514714	0.504553948218423	0.153912010516134	0.668703224331629	0.143358118601523	0.511997637637921	0.155164365287541	0.675538843712015	0.0326636773454274	0.987146223298106	1
Merged-chr2-163604061-2	chr2	163603961	163604161	+	571.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_131225, intron 1 of 3)	URR1B|DNA|hAT-Charlie	1747.0	NR_131225	76080.0	Mm.89828	NM_029512	ENSMUSG00000017679	Ttpal	3110080A02Rik|5830472M02Rik	tocopherol (alpha) transfer protein-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-40671418-3	chr19	40671294	40671494	+	844.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009848, intron 1 of 9)	intron (NM_009848, intron 1 of 9)	11624.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	0.588137977052847	0.715113886435715	0.416245355696788	0.400241192490008	0.596283190605633	0.260441089360418	0.255019753795136	0.533668473109003	-0.801397645274779	0.647859578830445	1
Merged-chr14-103034798-2	chr14	103034698	103034898	+	624.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045657)	promoter-TSS (NR_045657)	-995.0	NR_045657	71264.0	Mm.399572	NR_045657	ENSMUSG00000114980	4933432I03Rik	-	RIKEN cDNA 4933432I03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-31061909-1	chr3	31061809	31062009	+	811.0	f0_c57.idr	Intergenic	B3|SINE|B2	22943.0	NR_105975	102465610.0		NR_105975	ENSMUSG00000098890	Mir7008	Gm27752|mmu-mir-7008	microRNA 7008	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-83349042-2	chr15	83348942	83349142	+	614.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357756, intron 1 of 15)	intron (NM_001357756, intron 1 of 15)	1205.0	NM_001357756	66251.0	Mm.258910	NM_025445	ENSMUSG00000054277	Arfgap3	0610009H19Rik|1810004P07Rik|1810035F16Rik|9130416J18Rik|Arfgap1	ADP-ribosylation factor GTPase activating protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-13212142-3	chr15	13212036	13212236	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38461.0	NM_007666	12563.0	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30246725-4	chr2	30246633	30246833	+	811.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177725, intron 2 of 3)	intron (NM_177725, intron 2 of 3)	8964.0	NM_177725	241296.0	Mm.389232	NM_177725	ENSMUSG00000007476	Lrrc8a	Lrrc8|mKIAA1437	leucine rich repeat containing 8A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-51846170-1	chr13	51846070	51846270	+	1000.0	f0_c57.idr	promoter-TSS (NM_011817)	promoter-TSS (NM_011817)	-505.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-91414230-5	chr1	91414166	91414366	+	833.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360900)	promoter-TSS (NM_001360900)	-228.0	NM_001360900	55927.0	Mm.280029	NM_019479	ENSMUSG00000067071	Hes6	AI326893|bHLHb41	hairy and enhancer of split 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64701946-4	chr5	64701871	64702071	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR33A_|LTR|ERVL	-91272.0	NR_045078	100042198.0	Mm.25191	NR_045078	ENSMUSG00000105402	Gm3716	Gm1683	predicted gene 3716	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-34465669-4	chr1	34465578	34465778	+	826.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011206, intron 5 of 14)	intron (NM_011206, intron 5 of 14)	5932.0	NM_011206	19253.0	Mm.361	NM_011206	ENSMUSG00000026126	Ptpn18	FLP1|HSCF|PTP-HSCF|PTP-K1|Ptpk1	protein tyrosine phosphatase, non-receptor type 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-17165471-2	chr11	17165371	17165571	+	552.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_024459, intron 1 of 5)	URR1A|DNA|hAT-Charlie	6173.0	NM_024459	19058.0	Mm.41840	NM_024459	ENSMUSG00000033953	Ppp3r1	CaNB1|Cnb1|MCIP1	protein phosphatase 3, regulatory subunit B, alpha isoform (calcineurin B, type I)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-61650536-6	chr14	61650465	61650665	+	839.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028264, intron 1 of 6)	intron (NR_028264, intron 1 of 6)	-18455.0	NR_029733	387174.0		NR_029733	ENSMUSG00000093007	Mir15a	Mirn15a|mir-15a|mmu-mir-15a	microRNA 15a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-25548585-4	chr18	25548465	25548665	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362322, intron 2 of 12)	intron (NM_001362322, intron 2 of 12)	131183.0	NM_001362337	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-122191182-3	chr14	122191080	122191280	+	953.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029556, intron 1 of 7)	intron (NM_029556, intron 1 of 7)	9486.0	NM_029556	69634.0	Mm.34608	NM_029556	ENSMUSG00000025545	Clybl	0610033J05Rik|2310014M14Rik|AI256068|Clb	citrate lyase beta like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36253030-4	chr1	36252935	36253135	+	913.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8733.0	NM_198899	320011.0	Mm.261022	NM_198899	ENSMUSG00000037470	Uggt1	0910001L17Rik|A930007H10Rik|AA589501|AI414429|AI448372|C820010P03Rik|GT|UGT1|Ugcgl1	UDP-glucose glycoprotein glucosyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-88732570-4	chr15	88732480	88732680	+	928.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033274, intron 1 of 12)	intron (NM_001033274, intron 1 of 12)	1639.0	NM_001033274	223770.0	Mm.254438	NM_001033274	ENSMUSG00000022387	Brd1	1110059H06Rik|AI316859|mKIAA4191	bromodomain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-122015232-2	chr14	122015282	122015482	+	882.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_026861, intron 8 of 8)	intron (NM_026861, intron 8 of 8)	-19292.0	NM_001037744	223262.0	Mm.297637	NM_001037744	ENSMUSG00000071229	Timm8a2	-	translocase of inner mitochondrial membrane 8A2	protein-coding	-0.226235296896101	0.595109062818019	-0.213198233288771	-0.218068504042706	-0.225013795898844	0.608384863201147	-0.211812549537951	-0.217215065379025	0.0395006580732415	0.987233647591244	1
Merged-chr1-138323252-4	chr1	138323156	138323356	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49518.0	NM_177397	338375.0	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-145794688-4	chr2	145794593	145794793	+	911.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028724, intron 2 of 12)	intron (NM_028724, intron 2 of 12)	8577.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-113396107-3	chr2	113395992	113396192	+	868.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285458, intron 2 of 16)	intron (NM_001285458, intron 2 of 16)	-44972.0	NM_001285459	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	0.848735637119897	0.906823482418433	1.30642183525986	2.11462873310274	1.86229873023656	1.68205409302775	0.892478103972403	1.68106768472208	0.486226724983588	0.720585120860556	0.998431161219273
Merged-chr6-123122718-3	chr6	123122626	123122826	+	795.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011999)	promoter-TSS (NM_011999)	36.0	NM_001170332	26888.0	Mm.47384	NM_011999	ENSMUSG00000030148	Clec4a2	Clec4a|Clecsf6|DCIR|Dcir1	C-type lectin domain family 4, member a2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-52231661-2	chr1	52231561	52231761	+	654.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081081, intron 1 of 17)	intron (NM_001081081, intron 1 of 17)	1571.0	NM_001081081	14660.0	Mm.398608	NM_001081081	ENSMUSG00000026103	Gls	6330442B14|AI314027|B230365M23Rik	glutaminase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-105732668-4	chr5	105732583	105732783	+	966.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122768, intron 2 of 2)	intron (NM_001122768, intron 2 of 2)	31873.0	NM_178701	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	3.44490122519676	3.33031848016825	2.65863336760635	2.26522949282392	3.67975103386755	3.35479952238331	1.92215703472579	3.69725184581029	0.522437787552538	0.462512178149363	0.921194606787634
Merged-chr9-90253124-2	chr9	90253024	90253224	+	542.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 1 of 12)	Lx8|LINE|L1	17645.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-38693374-4	chr15	38693252	38693452	+	872.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_025494)	TTS (NM_025494)	31448.0	NM_025494	66335.0	Mm.276618	NM_025494	ENSMUSG00000022295	Atp6v1c1	1700025B18Rik|U13839	ATPase, H+ transporting, lysosomal V1 subunit C1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-7792874-4	chr10	7792758	7792958	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026141)	promoter-TSS (NM_026141)	-36.0	NM_026141	67418.0	Mm.38927	NM_026141	ENSMUSG00000015757	Ppil4	3732410E19Rik|3830425H19Rik|AI788954|AW146233|PPIase	peptidylprolyl isomerase (cyclophilin)-like 4	protein-coding	0.407436434605314	0.85302016363708	0.291469355330897	0.433900483787293	0.629205890040959	0.862853147494596	0.292598162779984	0.288223827708479	0.187480430355224	0.918701609905072	1
Merged-chr7-128523556-4	chr7	128523427	128523627	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013863)	promoter-TSS (NM_013863)	-56.0	NM_013863	29810.0	Mm.84073	NM_013863	ENSMUSG00000030847	Bag3	AA407278|Bis|mg638	BCL2-associated athanogene 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-13156049-3	chr8	13155948	13156148	+	957.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3113.0	NM_001317353	16783.0	Mm.16716	NM_010684	ENSMUSG00000031447	Lamp1	CD107a|LGP-120|LGP-A|Lamp-1|P2B|Perk	lysosomal-associated membrane protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-108798683-2	chr4	108798583	108798783	+	669.1999509999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17595.0	NM_001347163	230597.0	Mm.196776	NM_183300	ENSMUSG00000034557	Zfyve9	Madhip|NSP|SARA|SMADIP	zinc finger, FYVE domain containing 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-84637675-1	chr2	84637575	84637775	+	720.0	f0_balb.idr	intron (NM_007615, intron 1 of 19)	PB1D10|SINE|Alu	11805.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-60633287-2	chr8	60633187	60633387	+	803.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001293769, intron 1 of 1)	CpG	462.0	NM_001293769	71306.0	Mm.23242	NM_027756	ENSMUSG00000031647	Mfap3l	4933428A15Rik|5430405D20Rik|AI461995|AW125052|NYD-sp9|mKIAA0626	microfibrillar-associated protein 3-like	protein-coding	-0.157885475330393	-0.137284828943531	-0.143961433034001	0.744291575488011	-0.156579731075764	0.682734973925826	-0.14248299263815	-0.148248755590419	-0.153943636139018	0.949185136974274	1
Merged-chr16-35022921-3	chr16	35022823	35023023	+	847.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023587, intron 1 of 6)	CpG	502.0	NM_023587	70757.0	Mm.27286	NM_023587	ENSMUSG00000035376	Hacd2	6330408J20Rik|AI255777|AI481689|Hcad2|Ptplb	3-hydroxyacyl-CoA dehydratase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-21425276-2	chr5	21425176	21425376	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029195)	promoter-TSS (NM_029195)	373.0	NM_177869	330050.0	Mm.40655	NM_177869	ENSMUSG00000047221	Fam185a	4631428I10|AI847670	family with sequence similarity 185, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-14657040-4	chr18	14656947	14657147	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009280, intron 3 of 10)	intron (NM_009280, intron 3 of 10)	25867.0	NM_001161369	268996.0	Mm.31761	NM_009280	ENSMUSG00000037013	Ss18	D130059H17|Ssxt|Syt	SS18, nBAF chromatin remodeling complex subunit	protein-coding	5.02127870224933	4.12497158674762	3.83978766216604	4.43344909418389	3.8978864982178	4.35306203215123	4.62736099013072	3.28644859186031	-0.411568564329095	0.384218696884895	0.875228269073884
Merged-chr3-95283034-4	chr3	95282940	95283140	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173347)	promoter-TSS (NM_173347)	105.0	NM_199475	75007.0	Mm.279287	NM_133858	ENSMUSG00000038712	Mindy1	1810005H09Rik|4930504E06Rik|AA562754|AA960384|AW561904|Fam63a|cI-40|mKIAA1390|ni	MINDY lysine 48 deubiquitinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-75695835-2	chr2	75695735	75695935	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_132727, intron 1 of 1)	B1F|SINE|Alu	8828.0	NR_132727	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-59024551-4	chr6	59024459	59024659	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153574)	promoter-TSS (NM_153574)	-57.0	NM_153574	58909.0	Mm.28813	NM_153574	ENSMUSG00000037709	Fam13a	AI462012|D430015B01Rik|FAM13A1|Precm1	family with sequence similarity 13, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-149006297-4	chr5	149006129	149006329	+	830.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040429)	promoter-TSS (NR_040429)	-733.0	NR_040429	100503307.0	Mm.188008	NR_040429	ENSMUSG00000086610	Gm15408	-	predicted gene 15408	ncRNA	2.80527696544885	3.07384533919974	2.70401923167995	1.3325164048547	1.72947924239777	3.1752859258645	2.23408768568445	2.00334537102721	-0.421144732697682	0.645099112591155	0.983701068654072
Merged-chr8-94387504-4	chr8	94387384	94387584	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357205, intron 1 of 7)	intron (NM_001357205, intron 1 of 7)	1055.0	NM_022331	64209.0	Mm.29151	NM_022331	ENSMUSG00000031770	Herpud1	Herp|Mifl|SUP	homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-49430020-2	chr17	49429920	49430120	+	703.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_020042, intron 1 of 10)	intron (NM_020042, intron 1 of 10)	1656.0	NM_020042	56738.0	Mm.22256	NM_020042	ENSMUSG00000064120	Mocs1	3110045D15Rik|AI043170|AW536397	molybdenum cofactor synthesis 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-37682786-4	chr16	37682682	37682882	+	988.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28414.0	NM_026610	68194.0	Mm.379154	NM_026610	ENSMUSG00000022820	Ndufb4	0610006N12Rik|1300010H20Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-66423890-2	chr18	66423790	66423990	+	726.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34714.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99585092-2	chr15	99584991	99585191	+	677.25	f0_balb.idr|f1_balb.idr	TTS (NM_009699)	TTS (NM_009699)	-5937.0	NM_009701	11830.0	Mm.45580	NM_009701	ENSMUSG00000044217	Aqp5	-	aquaporin 5	protein-coding	0.167383918056426	0.189415607478825	0.784405791313997	0.176680905692481	0.939613073993381	0.191026336102427	0.796127777458218	0.17765473180737	1.27975594135433	0.541147473811123	1
Merged-chr19-11602177-4	chr19	11602078	11602278	+	987.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026835, intron 2 of 6)	intron (NM_026835, intron 2 of 6)	2626.0	NM_026835	68774.0	Mm.290390	NM_026835	ENSMUSG00000024679	Ms4a6d	1110058E16Rik|AI447446|Ms4a11	membrane-spanning 4-domains, subfamily A, member 6D	protein-coding	2.14618189612939	2.63318370068055	2.43964418309641	1.82346618356455	1.90794976296672	2.84477756926874	2.45847066821342	2.26983892007635	0.269968829125928	0.747854811628071	0.998431161219273
Merged-chr13-17265919-1	chr13	17265819	17266019	+	542.0	f1_c57bl6.idr	intron (NM_138654, intron 11 of 13)	L1VL4|LINE|L1	428846.0	NM_138654	192136.0	Mm.364180	NM_138654	ENSMUSG00000055137	Sugct	5033411D12Rik|D17907	succinyl-CoA glutarate-CoA transferase	protein-coding	-0.991597071560028	-1.11266276692436	-1.12372915630895	-1.13234486067054	-1.13506748179545	-1.11026463418018	-1.12122396832063	-0.590291635890923	1.70329920231503	0.601976331032042	1
Merged-chr19-8819921-4	chr19	8819847	8820047	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027412)	promoter-TSS (NM_027412)	546.0	NM_001081196	68693.0	Mm.476519	NM_001081196	ENSMUSG00000071659	Hnrnpul2	1110031M08Rik|AI465155|Hnrpul2	heterogeneous nuclear ribonucleoprotein U-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-79325217-2	chr15	79325180	79325380	+	766.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_016915, intron 1 of 15)	intron (NM_016915, intron 1 of 15)	3091.0	NM_016915	53357.0	Mm.155620	NM_016915	ENSMUSG00000042632	Pla2g6	BB112799|PNPLA9|iPLA(2)beta|iPLA2|iPLA2beta	phospholipase A2, group VI	protein-coding	1.25922500449201	0.751886577364656	2.54033619189951	0.709129267413727	0.680971392142291	0.757092816060548	1.56939158721906	2.13382606428492	-0.372010551699315	0.878194992247536	0.998431161219273
Merged-chr10-12548645-5	chr10	12548570	12548770	+	642.200012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011682, intron 50 of 73)	intron (NM_011682, intron 50 of 73)	313065.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131678222-4	chr1	131678120	131678320	+	844.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10475.0	NM_001311096	226421.0	Mm.44508	NM_145509	ENSMUSG00000052688	Rab7b	5430435G22Rik	RAB7B, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-158534345-3	chr2	158534244	158534444	+	837.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145015, intron 5 of 14)	intron (NM_001145015, intron 5 of 14)	21548.0	NM_001145015	545481.0	Mm.125371	NM_001145015	ENSMUSG00000074625	Arhgap40	C20orf95|Gm14203	Rho GTPase activating protein 40	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25239394-4	chr7	25239317	25239517	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1566.0	NM_001031667	606496.0	Mm.491101	NM_001031667	ENSMUSG00000057177	Gsk3a	2700086H06Rik	glycogen synthase kinase 3 alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-43634225-3	chr11	43634151	43634351	+	680.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32689.0	NM_008375	16204.0	Mm.142716	NM_008375	ENSMUSG00000020405	Fabp6	GT|I-15P|I-BABP|ILBP|ILBP3|Illbp	fatty acid binding protein 6, ileal (gastrotropin)	protein-coding	1.76327588656854	2.42866122002972	2.42846015031839	2.08741520447966	1.3336139704862	1.46130174196549	1.78328613930215	1.5714283972516	-1.95274149601794	0.052611579729406	0.335405809560793
Merged-chr9-45386950-3	chr9	45386847	45387047	+	793.277771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022004, intron 1 of 7)	intron (NM_022004, intron 1 of 7)	-12762.0	NR_028499	11936.0	Mm.22742	NM_007503	ENSMUSG00000059412	Fxyd2	Atp1g1	FXYD domain-containing ion transport regulator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-75109456-4	chr8	75109343	75109543	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008566)	promoter-TSS (NM_008566)	-66.0	NM_001302540	17218.0	Mm.5048	NM_008566	ENSMUSG00000005410	Mcm5	AA617332|AI324988|AL033333|Cdc46|Mcmd5|P1-CDC46	minichromosome maintenance complex component 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153445019-4	chr2	153444919	153445119	+	821.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001001986)	promoter-TSS (NM_001001986)	-540.0	NM_001001986	329540.0	Mm.50600	NM_001001986	ENSMUSG00000061411	Nol4l	4931410H15|8430427H17Rik|AI429157|Gm1636	nucleolar protein 4-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-121738726-2	chr11	121738626	121738826	+	975.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36299.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-88511529-2	chr15	88511415	88511615	+	702.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-88787.0	NM_027306	70073.0	Mm.45306	NM_027306	ENSMUSG00000054117	Zdhhc25	1700030J15Rik	zinc finger, DHHC domain containing 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-88507593-2	chr15	88507493	88507693	+	600.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	-92709.0	NM_027306	70073.0	Mm.45306	NM_027306	ENSMUSG00000054117	Zdhhc25	1700030J15Rik	zinc finger, DHHC domain containing 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-105835075-3	chr2	105834970	105835170	+	671.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023876, intron 4 of 9)	intron (NM_023876, intron 4 of 9)	69494.0	NM_023876	77766.0	Mm.3608	NM_023876	ENSMUSG00000027167	Elp4	A330107A17Rik|Paxneb	elongator acetyltransferase complex subunit 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-34187937-3	chr10	34187844	34188044	+	675.733337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172508, intron 1 of 5)	intron (NM_172508, intron 1 of 5)	19607.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-64077167-3	chr7	64077086	64077286	+	825.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-76649.0	NM_001039104	17364.0	Mm.38875	NM_018752	ENSMUSG00000030523	Trpm1	4732499L03Rik|AI606771|Ltrpc1|Mlsn1	transient receptor potential cation channel, subfamily M, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-47714140-4	chr8	47714047	47714247	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172407)	promoter-TSS (NM_172407)	-216.0	NM_172407	70925.0	Mm.393807	NM_172407	ENSMUSG00000038069	Cdkn2aip	4921511I16Rik|AW208986|CARF	CDKN2A interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-143073602-3	chr6	143073487	143073687	+	780.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362115, intron 7 of 26)	intron (NM_001362115, intron 7 of 26)	26565.0	NM_001362118	74741.0	Mm.130260	NM_029081	ENSMUSG00000030279	C2cd5	5730419I09Rik|C030008B15Rik|CDP138	C2 calcium-dependent domain containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-156218094-1	chr4	156217994	156218194	+	905.0	f1_c57bl6.idr	exon (NM_172417, exon 2 of 4)	exon (NM_172417, exon 2 of 4)	2167.0	NM_172417	74183.0	Mm.431343	NM_172417	ENSMUSG00000078486	Perm1	2310042D19Rik	PPARGC1 and ESRR induced regulator, muscle 1	protein-coding	-0.104953531609317	0.530346505430288	-0.094178660912935	0.537599598712133	0.17197490277949	-0.0877560631853986	-0.093022134437368	-0.0975189854947003	-2.33115405755975	0.318882964560877	1
Merged-chr4-141977537-4	chr4	141977445	141977645	+	897.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177868, intron 5 of 31)	intron (NM_177868, intron 5 of 31)	-5447.0	NR_040672	545691.0	Mm.332015	NR_040672	ENSMUSG00000085424	Fhad1os1	Gm13037	forkhead-associated (FHA) phosphopeptide binding domain 1, opposite strand 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-123412947-2	chr8	123412847	123413047	+	922.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_023279, intron 1 of 3)	intron (NM_023279, intron 1 of 3)	1383.0	NM_023279	22152.0	Mm.40068	NM_023279	ENSMUSG00000062380	Tubb3	3200002H15Rik|M(beta)3|M(beta)6	tubulin, beta 3 class III	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-135424058-4	chr3	135423986	135424186	+	967.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025902)	promoter-TSS (NM_025902)	-653.0	NM_025902	67006.0	Mm.269993	NM_025902	ENSMUSG00000028165	Cisd2	1500009M05Rik|1500026J14Rik|1500031D15Rik|AI848398|B630006A20Rik|Miner1|Naf-1|Noxp70|Zcd2	CDGSH iron sulfur domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-113787398-7	chr11	113787330	113787530	+	843.595215	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172800, intron 44 of 44)	intron (NM_172800, intron 44 of 44)	-35615.0	NM_001163346	56699.0	Mm.293378	NM_020006	ENSMUSG00000041598	Cdc42ep4	1500041M20Rik|Borg4|CEP4	CDC42 effector protein (Rho GTPase binding) 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-158140552-2	chr2	158140452	158140652	+	648.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009373, intron 2 of 12)	intron (NM_009373, intron 2 of 12)	5840.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-110980184-3	chr5	110980097	110980297	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001267622, intron 2 of 22)	intron (NM_001267622, intron 2 of 22)	-23947.0	NR_030482	735278.0		NR_030482	ENSMUSG00000076163	Mir701	Mirn701|mir-701|mmu-mir-701	microRNA 701	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-38465250-2	chr2	38465150	38465350	+	662.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER5A1|DNA|hAT-Charlie	-46447.0	NM_021606	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-74501006-4	chr11	74500904	74501104	+	793.966675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001015046, intron 2 of 24)	intron (NM_001015046, intron 2 of 24)	89154.0	NM_001015046	380711.0	Mm.425690	NM_001015046	ENSMUSG00000038807	Rap1gap2	AU067654|Garnl4|Gm1561|mKIAA1039	RAP1 GTPase activating protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-35995418-4	chr1	35995335	35995535	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-72965.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-115765054-4	chr2	115764951	115765151	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207264, intron 10 of 10)	intron (NM_207264, intron 10 of 10)	126326.0	NR_035476	100316703.0		NR_035476	ENSMUSG00000088606	Mir1951	mir-1951|mmu-mir-1951	microRNA 1951	ncRNA	3.92918319499637	4.78778168787963	4.41185064298816	4.64712015439502	4.46698498175777	3.28178768268174	3.70780167169053	4.54754243568861	-0.470124203135187	0.30231580333059	0.804363402932686
Merged-chr6-31082360-2	chr6	31082260	31082460	+	818.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19267.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-11558872-4	chr4	11558795	11558995	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001256145)	promoter-TSS (NM_001256145)	-25.0	NM_001039556	623474.0	Mm.491200	NM_177285	ENSMUSG00000078773	Rad54b	E130016E03Rik	RAD54 homolog B (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-50711560-4	chr9	50711450	50711650	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311069, intron 1 of 19)	intron (NM_001311069, intron 1 of 19)	16434.0	NM_178118	330938.0	Mm.82598	NM_178118	ENSMUSG00000032064	Dixdc1	4930563F16Rik|BC048182|Ccd1|Ccd1Aalpha1L|Ccd1Abeta1L|Ccd1BalphaL|Ccd1BbetaL|Ccd1CL|mKIAA1735	DIX domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-120062548-2	chr4	120062448	120062648	+	626.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010657, intron 2 of 8)	intron (NM_010657, intron 2 of 8)	-98658.0	NM_007902	13615.0	Mm.284855	NM_007902	ENSMUSG00000028635	Edn2	ET-2|PPET2|VIC	endothelin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-105557969-4	chr5	105557848	105558048	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133897, intron 2 of 3)	intron (NM_133897, intron 2 of 3)	38477.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-74440704-4	chr17	74440609	74440809	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033367, intron 5 of 8)	intron (NM_001033367, intron 5 of 8)	18399.0	NM_001033367	268973.0	Mm.311884	NM_001033367	ENSMUSG00000039193	Nlrc4	9530011P19Rik|CLAN|CLAN1|CLANA|CLANB|CLANC|CLAND|Card12|IPAF	NLR family, CARD domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-44116194-3	chr17	44116111	44116311	+	734.805542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1K|LTR|ERVL-MaLR	-10402.0	NM_001357996	224794.0	Mm.255971	NM_199016	ENSMUSG00000023961	Enpp4	4933413N07Rik|AA986363|AI195364|E-NPP 4|Gm90	ectonucleotide pyrophosphatase/phosphodiesterase 4	protein-coding	2.48335272425709	2.33694341658032	1.52231697135446	2.74985586438516	3.90128236645577	2.96199142083217	3.84191469844726	3.0667314715753	2.04967895806257	0.00419503906591151	0.0584291845520434
Merged-chr12-69367737-2	chr12	69367637	69367837	+	796.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4413.0	NM_007481	11845.0	Mm.27308	NM_007481	ENSMUSG00000044147	Arf6	AI788669|AW496366	ADP-ribosylation factor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47792672-4	chr17	47792581	47792781	+	833.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001161723)	TTS (NM_001161723)	6937.0	NM_011549	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	1.89283563314304	1.38970999958313	1.69312101133737	1.11378568092925	1.99807941466266	1.7628821657156	2.26221134000869	1.78682469492905	1.23993121731926	0.248753534484766	0.74758343357745
Merged-chr9-30424436-1	chr9	30424336	30424536	+	554.0	f0_balb.idr	Intergenic	Intergenic	-2893.0	NM_028874	102607.0	Mm.35084	NM_028874	ENSMUSG00000031993	Snx19	3526401K03Rik|AI195321|AI848208|mKIAA0254	sorting nexin 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-119853706-2	chr8	119853606	119853806	+	698.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8599.0	NM_146219	234796.0	Mm.86446	NM_146219	ENSMUSG00000031828	Klhl36	-	kelch-like 36	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-58524142-1	chr16	58524042	58524242	+	551.0	f1_c57bl6.idr	promoter-TSS (NM_018784)	promoter-TSS (NM_018784)	111.0	NM_001357435	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47852355-2	chr17	47852298	47852498	+	675.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17707.0	NM_001109973	17240.0	Mm.329100	NM_010783	ENSMUSG00000032717	Mdfi	I-mf|I-mfa	MyoD family inhibitor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-125125737-6	chr4	125125628	125125828	+	894.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153159, intron 2 of 5)	intron (NM_153159, intron 2 of 5)	2153.0	NM_153159	230738.0	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-9992450-3	chr19	9992373	9992573	+	715.277771	f1_balb.idr|f1_c57bl6.idr	intron (NM_011913, intron 4 of 11)	intron (NM_011913, intron 4 of 11)	9160.0	NM_011913	24115.0	Mm.31577	NM_011913	ENSMUSG00000037418	Best1	Bmd|Vmd2|mBest1	bestrophin 1	protein-coding	2.21507519431707	1.98259720286042	1.40940167824688	3.15991966400278	2.35491966982954	3.16263129594103	2.28826080076902	3.35640935946379	0.973522182186211	0.260546880055971	0.761683739585661
Merged-chr12-72664220-1	chr12	72664120	72664320	+	551.0	f0_balb.idr	intron (NM_025522, intron 1 of 6)	intron (NM_025522, intron 1 of 6)	608.0	NM_025522	66375.0	Mm.289653	NM_025522	ENSMUSG00000021094	Dhrs7	2310016E22Rik|5730564L20Rik|AW061210|Retdsr4|Retsdr4	dehydrogenase/reductase (SDR family) member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-22229677-3	chr9	22229605	22229805	+	717.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028420, intron 1 of 4)	MERV1_LTR|LTR|ERV1	3993.0	NM_001164624	235047.0	Mm.290849	NM_172763	ENSMUSG00000057982	Zfp809	BB114266|C330026E23	zinc finger protein 809	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-77649386-2	chr18	77649286	77649486	+	737.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_178670, intron 3 of 4)	intron (NM_178670, intron 3 of 4)	64624.0	NM_178670	212163.0	Mm.23293	NM_178670	ENSMUSG00000047466	8030462N17Rik	Akd2|Ark2N	RIKEN cDNA 8030462N17 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81609016-1	chr10	81608916	81609116	+	546.0	f1_balb.idr	non-coding (NR_030677, exon 3 of 3)	non-coding (NR_030677, exon 3 of 3)	2708.0	NR_030677	268319.0	Mm.131825	NM_001033363	ENSMUSG00000074862	BC025920	-	zinc finger protein pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-107686956-2	chr3	107686856	107687056	+	857.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_145542, intron 1 of 16)	intron (NM_145542, intron 1 of 16)	9100.0	NM_001357113	229709.0	Mm.220328	NM_145542	ENSMUSG00000027893	Ahcyl1	1110034F20Rik|AA409031|AA414901|Ahcy-rs3|DCAL|Irbit	S-adenosylhomocysteine hydrolase-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-17960807-4	chr13	17960710	17960910	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16593.0	NM_019491	56044.0	Mm.27348	NM_019491	ENSMUSG00000008859	Rala	3010001O15Rik|AW322615|Ral|Rasl1	v-ral simian leukemia viral oncogene A (ras related)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171358593-4	chr1	171358482	171358682	+	717.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001360824, exon 4 of 4)	3' UTR (NM_001360824, exon 4 of 4)	2216.0	NM_001033039	68874.0	Mm.10756	NM_001033039	ENSMUSG00000045259	Klhdc9	1190002J23Rik|AA087357|ESTM31	kelch domain containing 9	protein-coding	1.96893202978709	1.53117681760011	0.818242273549301	2.17807567395259	0.77127689111368	2.3668281078059	0.823550405435963	0.802629338122426	-0.734047959846421	0.755420583104679	0.998431161219273
Merged-chr16-90401541-2	chr16	90401441	90401641	+	684.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_015755, intron 1 of 10)	intron (NM_015755, intron 1 of 10)	15144.0	NM_015755	26559.0	Mm.125874	NM_015755	ENSMUSG00000053414	Hunk	Bstk1|Mak-v	hormonally upregulated Neu-associated kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117613249-3	chr8	117613157	117613357	+	651.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172285, intron 28 of 32)	intron (NM_172285, intron 28 of 32)	58290.0	NM_028725	74032.0	Mm.296302	NM_028725	ENSMUSG00000034308	Sdr42e1	4632417N05Rik|AI117603	short chain dehydrogenase/reductase family 42E, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-135169433-1	chr6	135169333	135169533	+	946.3333130000001	f0_balb.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1218.0	NM_013546	15199.0	Mm.378937	NM_013546	ENSMUSG00000042770	Hebp1	Hebp|p22HBP	heme binding protein 1	protein-coding	1.38830298799599	2.11861339102603	1.92960059490767	1.05076389149876	1.39896590129608	2.0177993227631	1.31349670934214	2.33914963132436	0.428965570339982	0.703934372495008	0.998431161219273
Merged-chr13-12273060-4	chr13	12272898	12273098	+	982.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033268, intron 18 of 20)	ID2|SINE|ID	-14885.0	NM_001081128	238505.0	Mm.40335	NM_001081128	ENSMUSG00000021311	Mtr	AI894170|D830038K18Rik|MS	5-methyltetrahydrofolate-homocysteine methyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-27340862-3	chr14	27340790	27340990	+	785.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289687, intron 1 of 9)	PB1D10|SINE|Alu	4853.0	NM_001289687	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-101781477-4	chr2	101781383	101781583	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355625, intron 1 of 8)	intron (NM_001355625, intron 1 of 8)	16224.0	NM_175181	72446.0	Mm.24138	NM_175181	ENSMUSG00000032841	Prr5l	2600010E01Rik|4833411O04Rik|Protor-2|Protor2	proline rich 5 like	protein-coding	4.70820724070705	5.72817262252072	5.0600452005639	4.09410617956012	4.67309298358311	4.5770823868531	5.28864350498414	3.23242016629995	-0.482433825137168	0.302127596943629	0.80410978441208
Merged-chr7-16108735-2	chr7	16108635	16108835	+	582.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025898, intron 2 of 10)	intron (NM_025898, intron 2 of 10)	10155.0	NM_025898	108124.0	Mm.104540	NM_025898	ENSMUSG00000006024	Napa	1500039N14Rik|AW209189|RA81|SNAP-alpha|SNAPA|SNARE|a-SNAP|hyh	N-ethylmaleimide sensitive fusion protein attachment protein alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-102254462-2	chr7	102254368	102254568	+	779.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4350.0	NM_019566	56212.0	Mm.259795	NM_019566	ENSMUSG00000073982	Rhog	2810426G09Rik|Arhg|Sid10750	ras homolog family member G	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-39615993-2	chr18	39615893	39616093	+	888.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-128748.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-182868072-4	chr1	182867999	182868199	+	799.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356462, intron 5 of 8)	intron (NM_001356462, intron 5 of 8)	-86689.0	NM_016928	53791.0	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-36578781-1	chr13	36578681	36578881	+	583.0	f1_balb.idr	Intergenic	CpG	155696.0	NM_153529	68404.0	Mm.232930	NM_153529	ENSMUSG00000039114	Nrn1	0710008J23Rik|Cpg15|Nrn	neuritin 1	protein-coding	0.445209970374877	0.477449197974306	0.671465407445687	0.458913202597431	0.764486914789744	1.40584130630267	1.33869619163768	0.815071432818755	3.85221107818886	0.0219580954245413	0.190723862623296
Merged-chr4-155087555-2	chr4	155087455	155087655	+	687.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356327, intron 2 of 12)	intron (NM_001356327, intron 2 of 12)	951.0	NM_001356327	76866.0	Mm.200590	NM_001081100	ENSMUSG00000029049	Morn1	2900057D20Rik|4930417P05Rik|AU042805	MORN repeat containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-54900560-4	chr14	54900438	54900638	+	971.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6395.0	NM_019402	54196.0	Mm.7723	NM_019402	ENSMUSG00000022194	Pabpn1	PAB2|Pabp3|mPABII	poly(A) binding protein, nuclear 1	protein-coding	5.22547634610718	5.25089049516354	5.06208244266387	5.00538590190228	4.63481781047646	4.96982629521858	5.06058023914436	3.86771364598974	-0.529936956321525	0.131357839261181	0.566917753761026
Merged-chr10-95506254-2	chr10	95506154	95506354	+	543.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4305.0	NM_001359477	67270.0	Mm.30008	NM_026065	ENSMUSG00000062981	Mrpl42	2700009F22Rik|2900055D03Rik|D10Ertd322e|HSPC204|L31mt|L42mt|MRP-L31|MRP-L42|MRP-S32|PTD007|Rpml31|S32mt	mitochondrial ribosomal protein L42	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-21918860-4	chr10	21918769	21918969	+	762.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161845, intron 1 of 13)	intron (NM_001161845, intron 1 of 13)	36685.0	NM_001161845	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	1.4505839870356	1.24686644187339	0.8297776251553	1.01129473980615	1.63860519774652	1.07154368972725	1.04155132913205	1.8167200027396	1.10656064931486	0.396164978487496	0.883276804275027
Merged-chr4-6924877-3	chr4	6924783	6924983	+	817.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145711, intron 1 of 8)	intron (NM_145711, intron 1 of 8)	65840.0	NM_145711	252838.0	Mm.435828	NM_145711	ENSMUSG00000041272	Tox	1700007F02Rik	thymocyte selection-associated high mobility group box	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-121115183-2	chr8	121115083	121115283	+	694.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013519)	promoter-TSS (NM_013519)	-988.0	NM_013519	14234.0	Mm.14092	NM_013519	ENSMUSG00000046714	Foxc2	Fkh14|Hfhbf3|MFH-1|Mfh1	forkhead box C2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-89075990-4	chr15	89075896	89076096	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040417)	promoter-TSS (NR_040417)	-68.0	NM_026485	67976.0	Mm.284710	NM_026485	ENSMUSG00000015363	Trabd	5730502D15Rik|AL023039	TraB domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-13526435-5	chr9	13526263	13526463	+	921.3666380000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-93626.0	NM_001013813	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81622836-2	chr10	81622736	81622936	+	652.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_181586, exon 7 of 8)	exon (NM_181586, exon 7 of 8)	4486.0	NM_001163430	50721.0	Mm.25643	NM_181586	ENSMUSG00000034748	Sirt6	2810449N18Rik|AI043036|Sir2l6	sirtuin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-56592870-4	chr9	56592762	56592962	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42786.0	NM_001311076	235402.0	Mm.246605	NM_181074	ENSMUSG00000049556	Lingo1	4930471K13Rik|AV148400|LERN1|LINGO-1|Lrrn6a|UNQ201	leucine rich repeat and Ig domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19714705-2	chr7	19714605	19714805	+	960.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001109748, intron 1 of 8)	intron (NM_001109748, intron 1 of 8)	724.0	NM_001109748	53333.0	Mm.61682	NM_016871	ENSMUSG00000002984	Tomm40	AW539759|Mom35|Tom40	translocase of outer mitochondrial membrane 40	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-35231212-3	chr2	35231123	35231323	+	782.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25136.0	NM_001206367	227753.0	Mm.443	NM_146120	ENSMUSG00000026879	Gsn	ADF	gelsolin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131525303-4	chr1	131525225	131525425	+	902.7666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001081011, exon 2 of 23)	5' UTR (NM_001081011, exon 2 of 23)	2036.0	NM_001081011	14270.0	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-62038992-5	chr15	62038839	62039039	+	825.617798	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_132746)	promoter-TSS (NR_132746)	-318.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-62826580-6	chr16	62826474	62826674	+	891.1527710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026577, intron 3 of 9)	intron (NM_026577, intron 3 of 9)	11898.0	NM_026588	68159.0	Mm.386793	NM_026588	ENSMUSG00000047854	Stx19	A030009B12Rik	syntaxin 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-24965549-2	chr19	24965456	24965656	+	604.0	f0_c57.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-3940.0	NM_146097	226043.0	Mm.272127	NM_146097	ENSMUSG00000024878	Cbwd1	AV349248|BC018472	COBW domain containing 1	protein-coding	1.45654228825694	1.51458282431589	2.46528349776796	1.54740190204872	1.02326535588797	0.879651795263123	0.85975354810251	1.41844187916773	-2.70241905229492	0.0360230892167638	0.268784219168365
Merged-chr2-145825410-4	chr2	145825308	145825508	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028724, intron 4 of 12)	intron (NM_028724, intron 4 of 12)	39292.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-117825594-4	chr6	117825493	117825693	+	765.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER91B|DNA|hAT-Tip100	-15588.0	NM_001346649	232337.0	Mm.290847	NM_177684	ENSMUSG00000059689	Zfp637	AI646709|BC021601|Znf32	zinc finger protein 637	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-88589660-2	chr1	88589560	88589760	+	565.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38143.0	NR_037971	100503197.0	Mm.99352	NR_037971	ENSMUSG00000100798	Gm19589	-	predicted gene, 19589	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141794311-1	chr4	141794211	141794411	+	1000.0	f1_balb.idr	intron (NM_001355176, intron 1 of 8)	MIR3|SINE|MIR	699.0	NM_001277932	12371.0	Mm.88829	NM_015733	ENSMUSG00000028914	Casp9	AI115399|APAF-3|AW493809|CASP-9|Caspase-9|ICE-LAP6|Mch6	caspase 9	protein-coding	-1.8429182434137	-1.8129848525291	-1.82203695700074	-1.54461076807193	-1.84081697472045	-1.81102322372834	-1.81998775896484	-1.82814164409203	-1.43114970378833	0.684630132144154	1
Merged-chr19-56681419-4	chr19	56681219	56681419	+	917.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41053.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-28547427-2	chr2	28547327	28547527	+	763.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145836, intron 10 of 17)	intron (NM_001145836, intron 10 of 17)	13963.0	NM_001145836	19730.0	Mm.5236	NM_009058	ENSMUSG00000026821	Ralgds	Gnds|Rgds|mKIAA1308	ral guanine nucleotide dissociation stimulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-116971825-3	chr2	116971732	116971932	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	71680.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-79912448-3	chr12	79912342	79912542	+	753.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12291.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117337313-2	chr8	117337213	117337413	+	812.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	-11857.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-21934945-4	chr3	21934847	21935047	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-141705.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-32220243-1	chr19	32220143	32220343	+	550.0	f1_c57bl6.idr	intron (NM_144792, intron 5 of 9)	intron (NM_144792, intron 5 of 9)	-9230.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-108300557-3	chr13	108300457	108300657	+	793.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15780.0	NM_178683	218581.0	Mm.32318	NM_178683	ENSMUSG00000021697	Depdc1b	9830132O03|AW260467|XTP1	DEP domain containing 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-3092955-4	chr17	3092869	3093069	+	871.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8786.0	NR_003519	328734.0	Mm.335641	NR_003519		Pisd-ps2	D030013I16Rik	phosphatidylserine decarboxylase, pseudogene 2	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-98336735-2	chr7	98336635	98336835	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-15527.0	NM_001360615	66190.0	Mm.334041	NM_025408	ENSMUSG00000030760	Acer3	1110057L18Rik|5430429L08Rik|AV015045|Phca|aPHC	alkaline ceramidase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-112490308-3	chr2	112490212	112490412	+	950.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2652.0	NM_028844	74268.0	Mm.315125	NM_028844	ENSMUSG00000003604	Aven	1700013A01Rik|1700056A21Rik|mAven-L|mAven-S	apoptosis, caspase activation inhibitor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-31060394-2	chr17	31060294	31060494	+	555.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009593, intron 1 of 14)	intron (NM_009593, intron 1 of 14)	2700.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-59155596-1	chr11	59155496	59155696	+	568.0	f1_balb.idr	3' UTR (NM_173785, exon 3 of 3)	3' UTR (NM_173785, exon 3 of 3)	8149.0	NM_001270791	216792.0	Mm.266175	NM_173785	ENSMUSG00000049287	Iba57	4930543L23Rik|A230051G13Rik|C1orf69	IBA57 homolog, iron-sulfur cluster assembly	protein-coding	0.377684697418611	-0.204701617990514	-0.210225047139442	-0.214505353929931	0.693859305272258	-0.203460260861301	-0.209004478751046	-0.213756385794684	0.871256042810368	0.728637662792114	1
Merged-chr17-4995533-9	chr17	4995412	4995612	+	942.2037349999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001085355, exon 1 of 20)	exon (NM_001085355, exon 1 of 20)	438.0	NM_001085355	239985.0	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-54722145-4	chr18	54722041	54722241	+	901.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	110397.0	NR_045400	328957.0	Mm.402781	NR_045400		9330117O12Rik	9330117O12	RIKEN cDNA 9330117O12 gene	ncRNA	4.1140495032966	2.84466883405906	2.06857290081466	2.2216790101326	5.25781019600346	5.35593759475467	5.72540294013434	5.45468162491154	2.99616692911644	2.2769677139183e-09	3.47276169045658e-07
Merged-chr1-153443229-1	chr1	153443129	153443329	+	575.0	f0_balb.idr	intron (NM_001033162, intron 6 of 9)	RLTR40|LTR|ERVK	18020.0	NM_001033162	71836.0	Mm.49460	NM_001033162	ENSMUSG00000042708	Shcbp1l	1700012A16Rik	Shc SH2-domain binding protein 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-83661148-2	chr7	83661048	83661248	+	607.724976	f1_balb.idr|f1_c57bl6.idr	exon (NM_001360087, exon 12 of 19)	exon (NM_001360087, exon 12 of 19)	-5653.0	NM_001360089	16170.0	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-39491590-4	chr18	39491484	39491684	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-4339.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-99487134-4	chr5	99487055	99487255	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 2 of 3)	LTR33A|LTR|ERVL	-234228.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-61540044-4	chr8	61539929	61540129	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081390, intron 10 of 19)	intron (NM_001081390, intron 10 of 19)	51140.0	NM_001293774	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-10490307-1	chr17	10490207	10490407	+	624.0	f1_c57bl6.idr	intron (NR_077237, intron 1 of 1)	intron (NR_077237, intron 1 of 1)	34091.0	NR_077238	319750.0	Mm.383485	NR_077237	ENSMUSG00000089633	A230009B12Rik	-	RIKEN cDNA A230009B12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-49108627-4	chr13	49108515	49108715	+	893.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290313, intron 2 of 29)	intron (NM_001290313, intron 2 of 29)	39713.0	NM_029361	75607.0	Mm.342723	NM_029361	ENSMUSG00000037989	Wnk2	1810073P09Rik|AW122246|ESTM15|X83337|mKIAA1760	WNK lysine deficient protein kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-18011312-2	chr5	18011212	18011412	+	700.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081143, intron 5 of 7)	intron (NM_001081143, intron 5 of 7)	48742.0	NM_001081143	242851.0	Mm.332230	NM_001081143	ENSMUSG00000028777	Gnat3	Ggust|Gtn	guanine nucleotide binding protein, alpha transducing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-121332207-4	chr9	121332109	121332309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152160, intron 1 of 17)	intron (NR_152160, intron 1 of 17)	34707.0	NR_152160	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-27438447-4	chr19	27438276	27438476	+	900.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8339.0	NR_027987	107372.0	Mm.17942	NM_175354		C030016D13Rik	AW413347	RIKEN cDNA C030016D13 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128803638-4	chr2	128803536	128803736	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008587)	TTS (NM_008587)	-14667.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	3.43652848690386	2.72035973038584	2.48370131826398	2.25358647751217	3.09850741330229	3.10312548195833	2.89482479140213	3.51409784780065	0.62283586930382	0.358605218258211	0.85594404681605
Merged-chr9-71592332-2	chr9	71592232	71592432	+	655.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033208)	promoter-TSS (NM_001033208)	28.0	NM_001033208	102371.0	Mm.27585	NM_001033208	ENSMUSG00000041361	Myzap	AA407270|AV006038|Gcom1|Gm640|Grinl1a7|Myozap	myocardial zonula adherens protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-43883960-3	chr5	43883833	43884033	+	782.122253	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007646, intron 1 of 7)	MTD|LTR|ERVL-MaLR	15124.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	1.11864730905524	0.713540336810209	1.08104382461902	1.60576788017188	1.24251910481909	1.65566399196991	0.703550245229424	0.692407651700469	-0.0993246417736811	0.946882265194867	0.998431161219273
Merged-chr4-129854146-2	chr4	129854046	129854246	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33438.0	NM_001164745	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	0.30001667631241	0.911211009974107	0.321820357888583	1.24632718852837	0.302075312233473	0.334475053134679	0.324117077187531	1.34011021705868	-0.386467621307929	0.841867670566771	1
Merged-chr16-14237507-3	chr16	14237407	14237607	+	707.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013607, intron 9 of 41)	MER20|DNA|hAT-Charlie	53901.0	NM_001161775	17880.0	Mm.250705	NM_013607	ENSMUSG00000018830	Myh11	AV071570|SM1|SM2|smMHC	myosin, heavy polypeptide 11, smooth muscle	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-102750144-3	chr2	102750063	102750263	+	958.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077514, intron 6 of 10)	intron (NM_001077514, intron 6 of 10)	-3403.0	NR_153853	102637542.0	Mm.371582	NR_153852		Gm13872	-	predicted gene 13872	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-15678226-2	chr17	15678126	15678326	+	548.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26741.0	NM_007690	12648.0	Mm.8137	NM_007690	ENSMUSG00000023852	Chd1	4930525N21Rik|AI851787|AW555109	chromodomain helicase DNA binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-35131727-4	chr4	35131605	35131805	+	934.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178061, intron 1 of 3)	intron (NM_178061, intron 1 of 3)	-20350.0	NM_199157	387510.0	Mm.386929	NM_199157	ENSMUSG00000042993	Ifnk	-	interferon kappa	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-100085114-4	chr15	100085017	100085217	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_037311, intron 2 of 3)	B1_Mur2|SINE|Alu	46453.0	NM_001159361	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-14605674-1	chr8	14605574	14605774	+	694.166687	f0_balb.idr	intron (NM_172910, intron 4 of 15)	intron (NM_172910, intron 4 of 15)	-282862.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	0.894113684014451	2.21123900446663	0.969901955585209	0.942548685888086	2.15370995771965	2.09585375637158	3.18998714668334	1.44864934840897	2.4404571381086	0.0401032794079964	0.28549791119688
Merged-chr19-59943543-4	chr19	59943439	59943639	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033172)	promoter-TSS (NM_001033172)	115.0	NM_001164367	74998.0	Mm.24167	NM_001033172	ENSMUSG00000040022	Rab11fip2	4930470G04Rik|A830046J09Rik|AW558126|Nrip11	RAB11 family interacting protein 2 (class I)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-55210317-3	chr1	55210224	55210424	+	600.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356287, intron 1 of 7)	intron (NM_001356287, intron 1 of 7)	16458.0	NM_001356288	74013.0	Mm.292050	NM_028713	ENSMUSG00000025978	Rftn2	2700010E02Rik|3222401M22Rik	raftlin family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101381747-4	chr7	101381670	101381870	+	825.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040112, intron 1 of 30)	intron (NM_001040112, intron 1 of 30)	3648.0	NM_001040112	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128741159-4	chr2	128741086	128741286	+	981.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 4 of 18)	intron (NM_008587, intron 4 of 18)	42271.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53047128-2	chr4	53047028	53047228	+	895.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 37 of 49)	L3|LINE|CR1	35248.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19054337-2	chr7	19054237	19054437	+	551.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159671)	promoter-TSS (NM_001159671)	-350.0	NM_031255	83434.0	Mm.84435	NM_031255	ENSMUSG00000040866	Rsph6a	RSP4|Rshl1	radial spoke head 6 homolog A (Chlamydomonas)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-73419374-3	chr2	73419253	73419453	+	691.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32873.0	NM_001276444	68526.0	Mm.451014	NM_001080707	ENSMUSG00000041762	Gpr155	1110017O10Rik|DEPDC3|F730029F15Rik|PGR22	G protein-coupled receptor 155	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-158035683-2	chr3	158035583	158035783	+	784.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289524)	promoter-TSS (NM_001289524)	956.0	NM_001093752	69207.0	Mm.223946	NM_026989	ENSMUSG00000055436	Srsf11	0610009J05Rik|2610019N13Rik|BF642805|Sfrs11	serine/arginine-rich splicing factor 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-90139767-3	chr7	90139680	90139880	+	712.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360867, intron 1 of 19)	L1MB7|LINE|L1	9567.0	NM_001252520	233489.0	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4010363-2	chr19	4010263	4010463	+	945.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133666, intron 3 of 9)	B1_Mus1|SINE|Alu	2392.0	NM_133666	17995.0	Mm.29842	NM_133666	ENSMUSG00000037916	Ndufv1	CI-51kD	NADH dehydrogenase (ubiquinone) flavoprotein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-112656945-2	chr12	112656845	112657045	+	777.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_001165894, exon 11 of 14)	exon (NM_001165894, exon 11 of 14)	2406.0	NR_105904	102465566.0		NR_105904	ENSMUSG00000098380	Mir6939	Gm27498|mmu-mir-6939	microRNA 6939	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-145650755-4	chr3	145650662	145650862	+	997.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010516)	promoter-TSS (NM_010516)	-777.0	NM_010516	16007.0	Mm.1231	NM_010516	ENSMUSG00000028195	Cyr61	AI325051|CCN1|Igfbp10	cysteine rich protein 61	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-55818275-5	chr16	55818160	55818360	+	708.428589	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001159394, exon 5 of 12)	exon (NM_001159394, exon 5 of 12)	3878.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-153945361-3	chr1	153945257	153945457	+	628.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45428.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-119034850-4	chr2	119034736	119034936	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173450)	promoter-TSS (NM_173450)	46.0	NM_173450	271842.0	Mm.33617	NM_173450	ENSMUSG00000027324	Rpusd2	4921503C21Rik|9630001E10|BB231107	RNA pseudouridylate synthase domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-144140037-4	chr1	144139921	144140121	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153171, intron 5 of 5)	intron (NM_153171, intron 5 of 5)	37351.0	NM_153171	246709.0	Mm.38271	NM_153171	ENSMUSG00000051079	Rgs13	-	regulator of G-protein signaling 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-4906609-2	chr12	4906509	4906709	+	719.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145441, intron 1 of 6)	intron (NM_145441, intron 1 of 6)	911.0	NM_145441	217379.0	Mm.259170	NM_145441	ENSMUSG00000020634	Ubxn2a	6330407P03Rik|Ubxd4	UBX domain protein 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-29735847-4	chr5	29735714	29735914	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011847)	promoter-TSS (NM_011847)	-84.0	NM_001359198	23950.0	Mm.290110	NM_011847	ENSMUSG00000029131	Dnajb6	HSJ-2|Mrj|mDj4	DnaJ heat shock protein family (Hsp40) member B6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-80563839-4	chr15	80563738	80563938	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER46C|DNA|TcMar-Tigger	-3368.0	NM_001163189	383075.0	Mm.297626	NM_001163189	ENSMUSG00000050439	Enthd1	Gm1242|Gm86	ENTH domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-147091496-4	chr6	147091407	147091607	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001081237, exon 1 of 3)	5' UTR (NM_001081237, exon 1 of 3)	432.0	NM_001081237	232539.0	Mm.491206	NM_001081237	ENSMUSG00000040102	Klhl42	A330079N23Rik|AI450355|C230080I20Rik|Ctb9|Klhdc5|mKIAA1340	kelch-like 42	protein-coding	3.55519616302989	4.03761556300844	3.54221998383119	3.26180357228731	4.01632301779949	3.50206326844636	4.11659774148397	3.4606159718866	0.274961154589123	0.586989593518153	0.967957151188163
Merged-chr9-22117696-3	chr9	22117620	22117820	+	935.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357309)	promoter-TSS (NM_001357309)	-525.0	NM_001357312	66126.0	Mm.29801	NM_170777	ENSMUSG00000013822	Elof1	1110011K10Rik	ELF1 homolog, elongation factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-95398495-2	chr1	95398395	95398595	+	663.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	84867.0	NM_026321	67698.0	Mm.272705	NM_026321	ENSMUSG00000051185	Fam174a	2310044D20Rik|Fam174|Naa6|Tmem157	family with sequence similarity 174, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-33986992-4	chr10	33986891	33987091	+	978.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_015526)	TTS (NR_015526)	8064.0	NR_015526	414093.0	Mm.156915	NR_015526	ENSMUSG00000112280	A830082N09Rik	Gm17567	RIKEN cDNA A830082N09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-12569629-1	chr16	12569529	12569729	+	790.0	f1_balb.idr	Intergenic	Intergenic	-241761.0	NR_040507	75493.0	Mm.396146	NR_040507	ENSMUSG00000101565	1700003L19Rik	-	RIKEN cDNA 1700003L19 gene	ncRNA	1.49808432796584	0.806645500408543	0.788056074382854	1.8907071035707	0.751833933575068	1.85583989273751	0.792204705346675	1.98490216786201	0.446819795606713	0.764272343938046	0.998431161219273
Merged-chr16-91548788-3	chr16	91548658	91548858	+	876.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008338, intron 1 of 6)	B3|SINE|B2	1664.0	NM_008338	15980.0	Mm.249364	NM_008338	ENSMUSG00000022965	Ifngr2	Ifgr2|Ifgt	interferon gamma receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-87863412-3	chr10	87863313	87863513	+	608.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111274, intron 1 of 4)	intron (NM_001111274, intron 1 of 4)	2302.0	NM_001111276	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-114754838-2	chr9	114754738	114754938	+	568.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23635.0	NM_026036	67213.0	Mm.28858	NM_026036	ENSMUSG00000032434	Cmtm6	2810051A14Rik|AA536733|Cklfsf6	CKLF-like MARVEL transmembrane domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-5804786-4	chr13	5804657	5804857	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53335.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-5092931-4	chr6	5092823	5093023	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181595, intron 6 of 15)	intron (NM_181595, intron 6 of 15)	101023.0	NM_011134	18979.0	Mm.237657	NM_011134	ENSMUSG00000002588	Pon1	Pon	paraoxonase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-56253524-3	chr19	56253448	56253648	+	927.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-34364.0	NM_001329936	226243.0	Mm.25791	NM_146101	ENSMUSG00000025075	Habp2	AI035669|FSAP|HABP|HGFAL|PHBP	hyaluronic acid binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-55627690-2	chr16	55627602	55627802	+	657.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	132971.0	NR_039578	100628589.0		NR_039578	ENSMUSG00000093292	Mir5118	mmu-mir-5118|mu-mir-5118	microRNA 5118	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171196295-3	chr1	171196210	171196410	+	828.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025557)	promoter-TSS (NM_025557)	-42.0	NM_025557	66425.0	Mm.482117	NM_025557	ENSMUSG00000038370	Pcp4l1	1500036F01Rik	Purkinje cell protein 4-like 1	protein-coding	-0.492919988280997	0.00374558826610222	-0.485281779473615	-0.488157410007684	-0.348548780805792	0.0129587163395171	-0.484458796283417	-0.487655408201222	0.349861389057422	0.89291078571182	1
Merged-chr2-152247388-2	chr2	152247288	152247488	+	705.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_007788, intron 1 of 12)	PB1D10|SINE|Alu	20548.0	NM_007788	12995.0	Mm.23692	NM_007788	ENSMUSG00000074698	Csnk2a1	CK2|Csnk2a1-rs4	casein kinase 2, alpha 1 polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-184844987-6	chr1	184844857	184845057	+	758.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133684, intron 1 of 7)	intron (NM_133684, intron 1 of 7)	890.0	NM_133684	67247.0	Mm.177724	NM_133684	ENSMUSG00000073481	Marc2	2810484M10Rik|Mosc2|mARC1	mitochondrial amidoxime reducing component 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-24456986-2	chr2	24456886	24457086	+	655.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011040, intron 2 of 11)	intron (NM_011040, intron 2 of 11)	18613.0	NM_011040	18510.0	Mm.2533	NM_011040	ENSMUSG00000026976	Pax8	Pax-8	paired box 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-106796719-4	chr1	106796614	106796814	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009190)	promoter-TSS (NM_009190)	11.0	NM_009190	20479.0	Mm.18705	NM_009190	ENSMUSG00000009907	Vps4b	8030489C12Rik|Skd1	vacuolar protein sorting 4B	protein-coding	4.37905826258505	4.58512889594896	4.28946843176148	4.42234864803631	4.10594173189213	4.40167008669328	3.01028633532422	4.08210591615484	-0.570750517420447	0.196824987700071	0.678723760037973
Merged-chr4-155163450-3	chr4	155163354	155163554	+	862.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011385, intron 1 of 6)	intron (NM_011385, intron 1 of 6)	59081.0	NM_011385	20481.0	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-116667399-2	chr4	116667299	116667499	+	671.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-15725.0	NM_021473	58810.0	Mm.30085	NM_021473	ENSMUSG00000028692	Akr1a1	2610201A18Rik|Akr1a4	aldo-keto reductase family 1, member A1 (aldehyde reductase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-48998871-4	chr7	48998738	48998938	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111016, intron 2 of 38)	intron (NM_001111016, intron 2 of 38)	39765.0	NM_001111016	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-53912345-2	chr10	53912245	53912445	+	583.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008548, intron 11 of 12)	MTEb-int|LTR|ERVL-MaLR	-161436.0	NM_001081428	75906.0	Mm.436785	NM_001081428	ENSMUSG00000019856	Fam184a	3110012E06Rik|4930438C08Rik|4930589M24Rik	family with sequence similarity 184, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83834433-4	chr11	83834351	83834551	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16418.0	NM_001291268	21410.0	Mm.7226	NM_009330	ENSMUSG00000020679	Hnf1b	HNF-1-beta|HNF-1B|HNF-1Beta|Hnf1beta|LFB3|Tcf-2|Tcf2|vHNF1	HNF1 homeobox B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-50869673-4	chr15	50869574	50869774	+	976.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_032000, intron 1 of 5)	CpG	19375.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	3.85487868093263	4.23623059507392	3.51629389250507	4.15745825341851	3.93881233433603	3.34393191007988	4.19078625571793	4.01399014411418	-0.0781550900719316	0.867921869383113	0.998431161219273
Merged-chr9-35156572-1	chr9	35156472	35156672	+	591.0	f1_c57bl6.idr	intron (NM_027030, intron 2 of 5)	intron (NM_027030, intron 2 of 5)	19415.0	NM_027030	69305.0	Mm.229110	NM_027030	ENSMUSG00000032040	Dcps	1700001E16Rik|AA408441	decapping enzyme, scavenger	protein-coding	0.716640153223327	2.06403379427494	1.33524960418781	0.739748467065915	1.08425390493013	1.55099236390756	1.61224797923727	0.742127364753466	-0.203863130761056	0.887181924221239	0.998431161219273
Merged-chr14-10430093-4	chr14	10430001	10430201	+	966.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360141, intron 4 of 9)	intron (NM_001360141, intron 4 of 9)	23357.0	NM_001308286	14198.0	Mm.397619	NM_010210	ENSMUSG00000060579	Fhit	AW045638|Fra14A2	fragile histidine triad gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-128735-1	chr1	128635	128835	+	680.0	f1_c57bl6.idr	Intergenic	Intergenic	3542763.0	NM_001011874	497097.0	Mm.454496	NM_001011874	ENSMUSG00000051951	Xkr4	AY534250|Gm210|XRG4|mKIAA1889	X-linked Kx blood group related 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-8841682-2	chr19	8841582	8841782	+	761.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008144, intron 2 of 10)	PB1D7|SINE|Alu	1179.0	NM_001290823	14705.0	Mm.345134	NM_008144	ENSMUSG00000071657	Bscl2	2900097C17Rik|AI046355|Gng3lg	Berardinelli-Seip congenital lipodystrophy 2 (seipin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-59253681-2	chr4	59253581	59253781	+	861.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6370.0	NR_105031	101055769.0	Mm.421401	NR_105031		Gm12596	-	predicted gene 12596	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-110061550-4	chr7	110061425	110061625	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009281)	promoter-TSS (NM_009281)	-177.0	NM_009281	20841.0	Mm.10815	NM_009281	ENSMUSG00000061079	Zfp143	AA959806|AU015869|D7Ertd805e|KRAB14|SBF|Staf|Zfp79|Zfp80-rs1|Znf143|pHZ-1	zinc finger protein 143	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95860559-2	chr3	95860459	95860659	+	810.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4674.0	NR_151629	70767.0	Mm.279872	NM_027541	ENSMUSG00000015748	Prpf3	3632413F13Rik	pre-mRNA processing factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-145720937-4	chr2	145720837	145721037	+	911.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033220, intron 2 of 3)	intron (NR_033220, intron 2 of 3)	19742.0	NR_033220	408057.0	Mm.486711	NR_033220	ENSMUSG00000087594	BC039771	-	cDNA sequence BC039771	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-118114734-3	chr7	118114628	118114828	+	635.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_170669, intron 3 of 4)	intron (NM_170669, intron 3 of 4)	1419.0	NM_170669	267019.0	Mm.288212	NM_170669	ENSMUSG00000008683	Rps15a	A630031B11Rik	ribosomal protein S15A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-84330046-3	chr10	84329938	84330138	+	914.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	110433.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131076897-4	chr1	131076806	131077006	+	729.950012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008551, intron 1 of 9)	ORR1D2|LTR|ERVL-MaLR	20937.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	0.777676606058291	0.319638345404259	0.989230476256644	0.307243676961649	0.878224721535102	0.321211476570315	0.314192020752991	0.620273392501405	-0.457874372771164	0.808976993165047	1
Merged-chr19-46564235-2	chr19	46564135	46564335	+	752.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355233, intron 1 of 6)	intron (NM_001355233, intron 1 of 6)	8947.0	NM_001355233	56350.0	Mm.22085	NM_019718	ENSMUSG00000025035	Arl3	-	ADP-ribosylation factor-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81948732-4	chr15	81948643	81948843	+	780.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145473, intron 3 of 3)	intron (NM_145473, intron 3 of 3)	11984.0	NM_145473	105859.0	Mm.22524	NM_145473	ENSMUSG00000042109	Csdc2	AI415250|AI481750|Pippin	cold shock domain containing C2, RNA binding	protein-coding	-0.594474832657719	-0.579184184472599	-0.584146382330957	0.463340155743794	-0.593507580576399	-0.57807180183376	-0.373512392927692	-0.587329717553589	-2.80546937677648	0.295616116218127	1
Merged-chr13-113602081-4	chr13	113601987	113602187	+	764.854187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130796, intron 1 of 1)	ORR1B2|LTR|ERVL-MaLR	16477.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-119538849-2	chr4	119538749	119538949	+	889.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172699)	promoter-TSS (NM_172699)	-80.0	NM_001004178	433752.0	Mm.425205	NM_001004178	ENSMUSG00000087385	Frg2f1	AA415398	FSHD region gene 2 family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-45532499-4	chr4	45532409	45532609	+	870.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1681.0	NM_001033306	230126.0	Mm.251716	NM_001033306	ENSMUSG00000044813	Shb	BC028832	src homology 2 domain-containing transforming protein B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84704538-3	chr8	84704421	84704621	+	751.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001081981)	TTS (NM_001081981)	3064.0	NM_008535	17095.0	Mm.4925	NM_008535	ENSMUSG00000034041	Lyl1	Lyl-1|bHLHa18	lymphoblastomic leukemia 1	protein-coding	2.05879752958616	2.06337951605306	2.11875598420955	1.94360612634369	2.32683297458074	1.31772960905081	2.13492186639117	1.95303028240757	-0.130015146498336	0.89270371427492	0.998431161219273
Merged-chr1-46873980-4	chr1	46873880	46874080	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356417, intron 2 of 10)	intron (NM_001356417, intron 2 of 10)	-20362.0	NM_172653	227059.0	Mm.233889	NM_172653	ENSMUSG00000025986	Slc39a10	2900042E17Rik|5430433I10|Zip10|mKIAA1265	solute carrier family 39 (zinc transporter), member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-147471431-4	chr5	147471320	147471520	+	982.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028291, intron 4 of 18)	intron (NM_028291, intron 4 of 18)	41264.0	NM_028291	72587.0	Mm.320469	NM_028291	ENSMUSG00000029647	Pan3	2700050F09Rik|A430027N15Rik|AU014670	PAN3 poly(A) specific ribonuclease subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180261982-4	chr1	180261862	180262062	+	901.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-5662.0	NM_001128605	19165.0	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-12921298-4	chr17	12921197	12921397	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290712, intron 6 of 10)	intron (NM_001290712, intron 6 of 10)	-1560.0	NR_028479	100303746.0		NR_028479		Snora20	MBI-125	small nucleolar RNA, H/ACA box 20	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90484585-1	chr2	90484485	90484685	+	1000.0	f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	-5411.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134994347-3	chr6	134994283	134994483	+	969.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12382.0	NM_001109914	381823.0	Mm.296104	NM_001109914	ENSMUSG00000090698	Apold1	Gm1075	apolipoprotein L domain containing 1	protein-coding	0.230628485399935	0.891628795233567	0.256045825022245	0.246648118774324	0.431003918458128	0.270613869521838	1.7162160150536	0.65099129973799	2.22560766603511	0.217159914662407	0.707668122771131
Merged-chr10-41477892-4	chr10	41477786	41477986	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358838)	promoter-TSS (NM_001358838)	-124.0	NM_001358838	171580.0	Mm.290431	NM_138315	ENSMUSG00000019823	Mical1	MICAL|MICAL-1|Nical	microtubule associated monooxygenase, calponin and LIM domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-103370321-1	chr11	103370221	103370421	+	637.0	f1_balb.idr	intron (NM_183034, intron 9 of 11)	intron (NM_183034, intron 9 of 11)	-6629.0	NM_001205236	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	0.0142816468003658	0.111408010625698	0.309915149344919	-0.230171620080423	-0.234544214396387	-0.222106227834629	-0.226173877250684	-0.0733880037286739	-2.7297520920744	0.230669662790196	1
Merged-chr2-131086842-4	chr2	131086737	131086937	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011426)	promoter-TSS (NM_011426)	-72.0	NM_011426	20612.0	Mm.1374	NM_011426	ENSMUSG00000027322	Siglec1	Cd169|Siglec-1|Sn	sialic acid binding Ig-like lectin 1, sialoadhesin	protein-coding	1.98218228933122	1.80319928944724	2.15986950151994	3.51159316361094	2.52003129196302	2.43030583007717	2.94726350280509	3.52857825180801	0.637540873674592	0.439492129913642	0.909130714404946
Merged-chr15-103515241-4	chr15	103515148	103515348	+	967.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001285890, exon 1 of 15)	5' UTR (NM_001285890, exon 1 of 15)	271.0	NM_001285890	18574.0	Mm.390792	NM_008800	ENSMUSG00000022489	Pde1b	Pde1b1	phosphodiesterase 1B, Ca2+-calmodulin dependent	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-114461819-6	chr7	114461718	114461918	+	980.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011055, intron 1 of 15)	intron (NM_011055, intron 1 of 15)	46564.0	NM_011055	18576.0	Mm.430730	NM_011055	ENSMUSG00000030671	Pde3b	9830102A01Rik|AI847709	phosphodiesterase 3B, cGMP-inhibited	protein-coding	3.0026706958848	2.66293568649044	2.95809458420439	2.25748772647257	2.16370112455222	2.68211622345262	2.3379639404845	2.39986022990066	-0.742732056442181	0.323293020275802	0.826128066686915
Merged-chr6-84043638-4	chr6	84043528	84043728	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077694, intron 3 of 54)	intron (NM_001077694, intron 3 of 54)	24242.0	NM_021469	26903.0	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141641282-1	chr4	141641182	141641382	+	577.0	f1_balb.idr	intron (NM_001347237, intron 5 of 18)	intron (NM_001347237, intron 5 of 18)	-17448.0	NM_001013780	384071.0	Mm.295682	NM_001013780	ENSMUSG00000040740	Slc25a34	Gm1369	solute carrier family 25, member 34	protein-coding	0.978872386268826	1.75697428235117	1.0409485600386	2.13951430843545	0.984915286176017	2.20088650625512	2.22824045344488	2.63176777395492	1.43589827594771	0.23761222860417	0.734133644982506
Merged-chr14-102810498-4	chr14	102810402	102810602	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	172130.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-35834562-4	chr11	35834476	35834676	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025936)	promoter-TSS (NM_025936)	-48.0	NM_025936	104458.0	Mm.284906	NM_025936	ENSMUSG00000018848	Rars	2610011N19Rik|2610037E21Rik|AL033339|AW985894	arginyl-tRNA synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-124267595-2	chr14	124267495	124267695	+	659.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_207667, intron 1 of 4)	L1_Mus4|LINE|L1	-75049.0	NM_010201	14169.0	Mm.206362	NM_010201	ENSMUSG00000025551	Fgf14	FHF-4|Fhf4|Tg(tetO-MAPT*P301L)4510Kha|mFHF-4(1B)	fibroblast growth factor 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27401729-3	chr2	27401623	27401823	+	680.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009500, intron 1 of 27)	ORR1A2-int|LTR|ERVL-MaLR	25885.0	NR_133905	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-128360250-2	chr6	128360150	128360350	+	950.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001326585, intron 1 of 2)	ID_B1|SINE|B4	2572.0	NM_001326586	72440.0	Mm.143908	NM_197981	ENSMUSG00000048668	Rhno1	2510047L19Rik|5930416I19Rik	RAD9-HUS1-RAD1 interacting nuclear orphan 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-8648551-4	chr4	8648379	8648579	+	758.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41927.0	NM_001277149	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76925655-4	chr15	76925503	76925703	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172817)	promoter-TSS (NM_172817)	-155.0	NM_001168276	239546.0	Mm.183650	NM_172817	ENSMUSG00000054967	Zfp647	6030449J21|Es492|Znf250	zinc finger protein 647	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-144260547-2	chr5	144260447	144260647	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163709, intron 2 of 2)	intron (NM_001163709, intron 2 of 2)	5322.0	NM_018772	55950.0	Mm.38011	NM_018772	ENSMUSG00000047843	Bri3	I3	brain protein I3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-66438519-2	chr18	66438419	66438619	+	677.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur2|SINE|Alu	-20085.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-97749851-2	chr7	97749768	97749968	+	719.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11621.0	NM_175105	66333.0	Mm.29756	NM_175105	ENSMUSG00000042797	Aqp11	1700015P13Rik|AI648923|sjds	aquaporin 11	protein-coding	0.811283286844976	0.535244229619039	0.52456917859098	1.12019163226833	0.81932578684278	0.760996338679417	1.64548770117242	0.709763131255596	1.2922692541695	0.399001971016278	0.885102732944651
Merged-chr15-31601780-4	chr15	31601673	31601873	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007637)	promoter-TSS (NM_007637)	73.0	NM_007637	12465.0	Mm.282158	NM_007637	ENSMUSG00000022234	Cct5	CCT-epsilon|Ccte|TCP-1-epsilon|TCPE|mKIAA0098	chaperonin containing Tcp1, subunit 5 (epsilon)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75561183-2	chr11	75561087	75561287	+	720.583313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199284, intron 6 of 13)	intron (NM_001199284, intron 6 of 13)	9758.0	NR_039553	100628624.0		NR_039553	ENSMUSG00000093100	Mir3971	mmu-mir-3971|mu-mir-3971	microRNA 3971	ncRNA	-0.042476179385763	-0.0224683772441757	-0.0289756619966254	0.825144760643873	0.120527463853682	-0.0210076159943183	0.707173877092251	-0.0331427621789032	-0.106140552453922	0.961876457121768	1
Merged-chr17-70968983-7	chr17	70968873	70969073	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21543.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-45117305-4	chr2	45117218	45117418	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001355288, exon 1 of 11)	5' UTR (NM_001355288, exon 1 of 11)	124.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-117121222-4	chr4	117121120	117121320	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_024078, exon 6 of 7)	non-coding (NR_024078, exon 6 of 7)	4505.0	NR_024078	78611.0	Mm.446227	NM_001033187		Btbd19	9530048O09Rik|BB115071	BTB (POZ) domain containing 19	ncRNA	5.7990349809575	5.9591795534327	5.47881359140492	5.68282871545595	6.00302120594697	5.61650219518048	6.16449725432674	5.90020225714868	0.221347093853147	0.369891909388608	0.86364098252034
Merged-chr3-108997939-4	chr3	108997831	108998031	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163567, intron 2 of 10)	intron (NM_001163567, intron 2 of 10)	29676.0	NM_001163567	329739.0	Mm.69013	NM_001163567	ENSMUSG00000040339	Fam102b	1600010D10Rik|B430201A12Rik	family with sequence similarity 102, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-25466465-3	chr14	25466327	25466527	+	841.1555789999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	7242.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-13297399-3	chr1	13297306	13297506	+	849.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008678, intron 1 of 22)	RSINE1|SINE|B4	75023.0	NM_001302702	17978.0	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	-1.84456824087626	-1.81369603968745	-1.82303204814395	-1.83070092346192	-1.84240106943552	-1.51787681909439	-1.82091858046888	-1.82932819844659	1.64481029852639	0.639921510788462	1
Merged-chr1-131198493-4	chr1	131198388	131198588	+	912.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018750, intron 2 of 5)	intron (NM_018750, intron 2 of 5)	1697.0	NM_001311094	54354.0	Mm.248291	NM_018750	ENSMUSG00000026430	Rassf5	1300019G20Rik|Maxp1|Nore1|Nore1A|Nore1B|Rapl	Ras association (RalGDS/AF-6) domain family member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33782134-4	chr16	33782037	33782237	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11900.0	NM_010739	17063.0	Mm.3177	NM_010739	ENSMUSG00000022824	Muc13	114/A10|14/A10|AI159736|Lrrp|Ly64|NJ-1	mucin 13, epithelial transmembrane	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46941504-4	chr8	46941409	46941609	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45378.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-4885521-1	chr11	4885421	4885621	+	546.0	f1_balb.idr	intron (NM_008698, intron 4 of 9)	B3|SINE|B2	-5824.0	NR_105883	102466764.0		NR_105883	ENSMUSG00000098296	Mir6918	Gm27968|mmu-mir-6918	microRNA 6918	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-151322128-4	chr5	151322023	151322223	+	965.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-46552.0	NR_045700	625175.0	Mm.443286	NR_045699	ENSMUSG00000097321	1700028E10Rik	A630054D14|Gm6561	RIKEN cDNA 1700028E10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-17913036-1	chr16	17912936	17913136	+	545.0	f1_c57bl6.idr	TTS (NM_029469)	TTS (NM_029469)	-1688.0	NM_001081633	27886.0	Mm.256480	NM_022408	ENSMUSG00000003527	Dgcr14	AI462402|D16H22S1269E|Dgcr1|Dgsi|ES2|Es2el|Ess2	DiGeorge syndrome critical region gene 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-155216863-4	chr4	155216753	155216953	+	791.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011385, intron 1 of 6)	intron (NM_011385, intron 1 of 6)	5682.0	NM_011385	20481.0	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	0.198185660368453	1.37934955691672	0.232972019759693	1.99286304959904	0.432266341680246	0.25243945965836	0.236542496229534	0.222489988325487	-4.18540493165185	0.0231327996307781	0.198151399007427
Merged-chr3-108204156-4	chr3	108204035	108204235	+	731.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175183, intron 10 of 11)	intron (NM_175183, intron 10 of 11)	-3301.0	NM_001081320	72023.0	Mm.246391	NM_028061	ENSMUSG00000048796	Cyb561d1	1600010M23Rik|AI605489|AW457162	cytochrome b-561 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-136750153-3	chr3	136750047	136750247	+	738.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008913, intron 1 of 13)	intron (NM_008913, intron 1 of 13)	80081.0	NM_001293622	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-8357438-4	chr5	8357334	8357534	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001007220, intron 2 of 28)	intron (NM_001007220, intron 2 of 28)	10726.0	NM_001007221	11496.0	Mm.275895	NM_001007220	ENSMUSG00000040537	Adam22	2900022I03Rik|AI854032|MDC2	a disintegrin and metallopeptidase domain 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-5042685-1	chr18	5042585	5042785	+	1000.0	f0_balb.idr	Intergenic	Intergenic	-3904.0	NM_153153	225115.0	Mm.136791	NM_153153	ENSMUSG00000024236	Svil	AU024053|B430302E16Rik	supervillin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-3507330-2	chr18	3507228	3507428	+	991.5	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_026505)	promoter-TSS (NM_026505)	-629.0	NM_026505	68010.0	Mm.284863	NM_026505	ENSMUSG00000024232	Bambi	2610003H06Rik	BMP and activin membrane-bound inhibitor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-127498982-6	chr3	127498924	127499124	+	939.194458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001327938)	promoter-TSS (NM_001327938)	91.0	NM_001327938	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	3.57555435001083	3.74229232650167	3.24186584298023	3.80818676694917	2.72304105274998	2.02178487423678	2.96202448089948	2.74913429096339	-1.59648950921055	0.0100769869599092	0.109646635016618
Merged-chr15-34456352-4	chr15	34456262	34456462	+	893.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173421, intron 1 of 2)	MTD|LTR|ERVL-MaLR	3050.0	NM_173421	239368.0	Mm.211977	NM_173421	ENSMUSG00000044726	Erich5	-	glutamate rich 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-9977203-2	chr8	9977103	9977303	+	891.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026868)	promoter-TSS (NM_026868)	-514.0	NM_001081119	68904.0	Mm.142570	NM_026868	ENSMUSG00000040396	Abhd13	1110065L07Rik|AI463703|AI788994	abhydrolase domain containing 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141282906-2	chr7	141282806	141283006	+	670.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3773.0	NM_001309439	20287.0	Mm.4723	NM_011328	ENSMUSG00000038580	Sct	-	secretin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100700015-4	chr7	100699919	100700119	+	772.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6616.0	NM_001362169	319604.0	Mm.260362	NM_178764	ENSMUSG00000029461	Fam168a	2610030B18Rik|B930006L02Rik|mKIAA0280	family with sequence similarity 168, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141273022-4	chr4	141272923	141273123	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5416.0	NR_151527	100503810.0		NR_151527	ENSMUSG00000085395	Gm13056	-	predicted gene 13056	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91969666-1	chr2	91969566	91969766	+	627.0	f1_c57bl6.idr	Intergenic	ID|SINE|ID	-6103.0	NM_138306	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	0.871826676400986	1.29390564337548	0.730536318889002	1.5269058804738	0.707130093841213	1.55784354577751	1.10960201153004	1.21160399335262	0.134016302083793	0.924972631531322	0.998431161219273
Merged-chr15-12433115-2	chr15	12433015	12433215	+	607.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081064, intron 5 of 23)	intron (NM_001081064, intron 5 of 23)	111619.0	NM_025673	66629.0	Mm.157655	NM_025673	ENSMUSG00000022200	Golph3	4733401N08Rik|5730410D03Rik|AW413496	golgi phosphoprotein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-147936702-4	chr4	147936601	147936801	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011122)	promoter-TSS (NM_011122)	75.0	NM_011122	18822.0	Mm.23951	NM_011122	ENSMUSG00000019055	Plod1	2410042F05Rik|AI854890|AV007929|Lh1|Plod	procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-170875336-2	chr1	170875236	170875436	+	614.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356485, intron 4 of 4)	intron (NM_001356485, intron 4 of 4)	-7565.0	NM_001081304	226641.0	Mm.377046	NM_001081304	ENSMUSG00000026663	Atf6	9130025P16Rik|9630036G24|AA789574|Atf6alpha|ESTM49	activating transcription factor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98795143-4	chr11	98795023	98795223	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361932)	promoter-TSS (NM_001361932)	-393.0	NM_001361931	74026.0	Mm.258352	NM_028722	ENSMUSG00000052915	Msl1	2810017F12Rik|4121402D02Rik|4930463F05Rik|AA682082|Msl-1	male specific lethal 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-80043589-4	chr11	80043466	80043666	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	HAL1M8|LINE|L1	37425.0	NM_001277106	54394.0	Mm.272093	NM_018776	ENSMUSG00000017561	Crlf3	BB164954|Creme9|Cytor4	cytokine receptor-like factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-16986783-5	chr11	16986755	16986955	+	938.042847	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019549, intron 6 of 9)	intron (NM_019549, intron 6 of 9)	21863.0	NM_019549	56193.0	Mm.98232	NM_019549	ENSMUSG00000020120	Plek	2010300B13Rik	pleckstrin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-4186992-4	chr5	4186883	4187083	+	758.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5384.0	NM_001042670	208595.0	Mm.129815	NM_001042670	ENSMUSG00000053178	Mterf1b	Gm9897	mitochondrial transcription termination factor 1b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25110098-2	chr7	25109998	25110198	+	765.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163556, intron 5 of 13)	intron (NM_001163556, intron 5 of 13)	-12923.0	NR_105855	102465968.0		NR_105855	ENSMUSG00000098441	Mir6537	Gm27808|mmu-mir-6537	microRNA 6537	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-15577530-4	chr17	15577424	15577624	+	942.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14201.0	NM_144809	213389.0	Mm.215162	NM_144809	ENSMUSG00000051977	Prdm9	BC012016|Dsbc1|G1-419-29|Meisetz|PRDM9-B|Rcr1|repro7	PR domain containing 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-49250252-4	chr7	49250206	49250406	+	991.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175272, intron 1 of 37)	intron (NM_175272, intron 1 of 37)	4117.0	NM_175272	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-135110848-2	chr1	135110748	135110948	+	629.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153383, intron 28 of 36)	intron (NR_153383, intron 28 of 36)	-5572.0	NM_001033409	329252.0	Mm.279594	NM_001033409	ENSMUSG00000042793	Lgr6	A530037C04Rik|D830026M09	leucine-rich repeat-containing G protein-coupled receptor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-67419598-2	chr5	67419513	67419713	+	664.75	f0_balb.idr|f1_balb.idr	intron (NM_001164806, intron 1 of 4)	intron (NM_001164806, intron 1 of 4)	8186.0	NM_001164806	666938.0	Mm.101339	NM_001164806	ENSMUSG00000092060	Bend4	D330027G24Rik|EG666938	BEN domain containing 4	protein-coding	2.42347189399821	1.45736701002666	2.39539436267113	1.85196532716457	2.33821956862068	3.28028055264114	3.10154166862424	2.76645477450092	1.69039304418585	0.0402571905903635	0.28614086060615
Merged-chr10-79793590-4	chr10	79793498	79793698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161747)	promoter-TSS (NM_001161747)	26.0	NM_001161747	18483.0	Mm.34650	NM_023128	ENSMUSG00000035863	Palm	-	paralemmin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-90645091-4	chr15	90644969	90645169	+	940.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033851, intron 3 of 3)	intron (NM_001033851, intron 3 of 3)	34319.0	NM_025815	66871.0	Mm.290991	NM_025815	ENSMUSG00000052560	Cpne8	1200003E11Rik|1500031E20Rik	copine VIII	protein-coding	-0.53957200234276	-0.527827502805041	-0.531677082525443	0.00375101133009315	-0.53883940870504	-0.526959509798966	0.0537841093755231	-0.534127345506642	0.171907830995031	0.951160854050512	1
Merged-chr12-26469915-2	chr12	26469850	26470050	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_020557, exon 1 of 5)	exon (NM_020557, exon 1 of 5)	735.0	NM_020557	22169.0	Mm.271839	NM_020557	ENSMUSG00000020638	Cmpk2	1200004E04Rik|TDKI|Tyki	cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19719274-2	chr7	19719174	19719374	+	563.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008990, exon 8 of 9)	exon (NM_008990, exon 8 of 9)	-3845.0	NM_016871	53333.0	Mm.61682	NM_016871	ENSMUSG00000002984	Tomm40	AW539759|Mom35|Tom40	translocase of outer mitochondrial membrane 40	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-60381408-4	chr18	60381303	60381503	+	999.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021792, intron 2 of 2)	MTC|LTR|ERVL-MaLR	5374.0	NM_001146275	60440.0	Mm.261140	NM_021792	ENSMUSG00000054072	Iigp1	2900074L10Rik|AI046432|AW111922|Ifgga1|Iigp|Irga6	interferon inducible GTPase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-27437727-2	chr7	27437612	27437812	+	672.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_032610, intron 2 of 35)	B3|SINE|B2	8877.0	NM_032610	80297.0	Mm.459123	NM_032610	ENSMUSG00000011751	Sptbn4	1700022P15Rik|5830426A08Rik|ROSA62|SpbIV|Spnb4|dyn|lnd|nmf261|nmf379|qv	spectrin beta, non-erythrocytic 4	protein-coding	0.82954330078326	1.66154064134895	0.535280268930976	0.526325373038904	0.837828626803267	1.26145034998652	0.750195898193304	0.725550109927301	-0.364540704126298	0.810992929839133	0.998431161219273
Merged-chr6-89324338-2	chr6	89324238	89324438	+	630.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_008881, exon 25 of 32)	exon (NM_008881, exon 25 of 32)	38275.0	NM_008881	18844.0	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-28502321-4	chr13	28502214	28502414	+	831.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045054, intron 7 of 7)	intron (NR_045054, intron 7 of 7)	208559.0	NR_105787	102466635.0		NR_105787	ENSMUSG00000099158	Mir6368	Gm27800|mmu-mir-6368	microRNA 6368	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-15709546-4	chr9	15709435	15709635	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357565)	promoter-TSS (NM_001357565)	-203.0	NM_001357566	234967.0	Mm.138815	NM_172289	ENSMUSG00000043885	Slc36a4	6330573I15Rik|PAT4	solute carrier family 36 (proton/amino acid symporter), member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-90713321-4	chr6	90713232	90713432	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356440, intron 1 of 13)	intron (NM_001356440, intron 1 of 13)	3197.0	NM_001134383	232227.0	Mm.196943	NM_182784	ENSMUSG00000034312	Iqsec1	AW561907|BC026481|BRAG2|D6Ertd349e|cI-43	IQ motif and Sec7 domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-93813175-2	chr10	93813076	93813276	+	838.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18379.0	NM_001206851	327799.0	Mm.491598	NM_183199	ENSMUSG00000020020	Usp44	E430004F17Rik	ubiquitin specific peptidase 44	protein-coding	0.669274432592356	0.717051176318021	1.11051873281173	1.75153667999997	1.02381899417898	0.720438174409373	1.91620110089151	1.23154576693114	0.550358741754759	0.70831960242169	0.998431161219273
Merged-chr7-138911908-1	chr7	138911808	138912008	+	545.0	f1_c57bl6.idr	Intergenic	Intergenic	-2402.0	NM_009760	12176.0	Mm.378890	NM_009760	ENSMUSG00000078566	Bnip3	Nip3	BCL2/adenovirus E1B interacting protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120801254-2	chr8	120801154	120801354	+	560.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	62615.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-79304436-2	chr16	79304336	79304536	+	590.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-213339.0	NM_178855	19146.0	Mm.5184	NM_008941	ENSMUSG00000022857	Tmprss15	Entk|Prss7	transmembrane protease, serine 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-70805490-4	chr6	70805395	70805595	+	768.974976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13320.0	NM_009075	19895.0	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-29967228-2	chr14	29967128	29967328	+	719.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-1152.0	NM_019979	80795.0	Mm.104491	NM_019979	ENSMUSG00000042682	Selenok	1110001C03Rik|AA673253|HSPC030|Hsp30|Selk	selenoprotein K	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97459076-3	chr6	97459013	97459213	+	716.133362	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	173.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	1.83305006167333	1.60810064588053	1.22876571980234	1.93849850064485	1.56531648359893	1.03721227576613	1.23613354833653	1.85759625602257	-0.705108020472231	0.547801322271511	0.957907150886162
Merged-chr18-56823110-2	chr18	56823010	56823210	+	702.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177115, intron 1 of 4)	intron (NM_177115, intron 1 of 4)	102438.0	NM_177115	320253.0	Mm.312623	NM_177115	ENSMUSG00000032656	March3	6330411I15Rik|A530081L18Rik|AI843639|MARCH-III	membrane-associated ring finger (C3HC4) 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-85292573-1	chr1	85292473	85292673	+	667.333313	f1_balb.idr	Intergenic	Intergenic	-22007.0	NM_001037909	620078.0	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik	RIKEN cDNA C130026I21 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-79177778-1	chr3	79177678	79177878	+	617.0	f0_c57.idr	Intergenic	L1M3|LINE|L1	-31903.0	NM_001099624	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-52196409-2	chr14	52196347	52196547	+	734.200012	f1_balb.idr|f1_c57bl6.idr	intron (NM_033618, intron 1 of 25)	intron (NM_033618, intron 1 of 25)	792.0	NM_033618	114741.0	Mm.21662	NM_033618	ENSMUSG00000035726	Supt16	Cdc68|Fact140|Spt16|Supt16h	suppressor of Ty 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-137854693-3	chr2	137854569	137854769	+	921.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-401915.0	NM_001025431	228662.0	Mm.153405	NM_145534	ENSMUSG00000062098	Btbd3	mKIAA0952	BTB (POZ) domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43420983-2	chr4	43420883	43421083	+	615.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037709, intron 2 of 11)	intron (NM_001037709, intron 2 of 11)	8151.0	NM_177377	329831.0	Mm.454466	NM_177377	ENSMUSG00000042788	Fam166b	4833436C18Rik	family with sequence similarity 166, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122559235-4	chr8	122559141	122559341	+	989.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7912.0	NM_001357349	234839.0	Mm.37324	NM_001037298	ENSMUSG00000014444	Piezo1	9630020g22|Fam38a|mKIAA0233	piezo-type mechanosensitive ion channel component 1	protein-coding	1.34577077323191	1.05450310962538	1.87154576596674	2.10427002164084	2.22130711979356	1.05904407863397	1.46200319052505	1.82521558925979	0.16653936105276	0.88927594624784	0.998431161219273
Merged-chr16-95823908-2	chr16	95823808	95824008	+	629.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	74805.0	NR_040485	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70475350-4	chr11	70475254	70475454	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-15370.0	NM_023158	66102.0	Mm.425692	NM_023158	ENSMUSG00000018920	Cxcl16	0910001K24Rik|AV290116|BB024863|CXCL16v1|CXCL16v2|SR-PSOX|Zmynd15|b2b498Clo	chemokine (C-X-C motif) ligand 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-121508944-4	chr1	121508841	121509041	+	979.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010483)	TTS (NM_010483)	19524.0	NM_010483	15564.0	Mm.4833	NM_010483	ENSMUSG00000050534	Htr5b	5-Ht5b	5-hydroxytryptamine (serotonin) receptor 5B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-9876994-4	chr1	9876899	9877099	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133220, intron 6 of 17)	intron (NM_133220, intron 6 of 17)	28718.0	NM_001037759	170755.0	Mm.336410	NM_133220	ENSMUSG00000025915	Sgk3	2510015P22Rik|A330005P07Rik|Cisk|fy|fz	serum/glucocorticoid regulated kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-43568514-4	chr17	43568440	43568640	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013737)	promoter-TSS (NM_013737)	89.0	NM_013737	27226.0	Mm.9277	NM_013737	ENSMUSG00000023913	Pla2g7	PAF-AH|R75400	phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123718554-2	chr5	123718454	123718654	+	747.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027494, intron 2 of 13)	B1_Mus1|SINE|Alu	2490.0	NM_027494	70650.0	Mm.279427	NM_027494	ENSMUSG00000029427	Zcchc8	5730565F05Rik	zinc finger, CCHC domain containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111907725-4	chr12	111907625	111907825	+	883.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011625, intron 1 of 16)	C-rich|Low_complexity|Low_complexity	330.0	NM_011625	21981.0	Mm.313076	NM_011625	ENSMUSG00000021285	Ppp1r13b	AI449786|ASPP1|AW545810|Tp53bp2|Trp53bp2|p85	protein phosphatase 1, regulatory (inhibitor) subunit 13B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-82962855-4	chr10	82962733	82962933	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Charlie6|DNA|hAT-Charlie	-22664.0	NM_021439	58250.0	Mm.360747	NM_021439	ENSMUSG00000034612	Chst11	1110020P09Rik|C4ST|C4ST-1|C4ST1|C4s	carbohydrate sulfotransferase 11	protein-coding	4.38551828997678	3.10627654071857	2.81994701139623	4.09806797470797	5.01217082346319	5.37261027588949	5.33609363762119	4.66884387193727	1.69159012670798	0.000153227532662057	0.00435645482672834
Merged-chr4-19895844-4	chr4	19895740	19895940	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175406, intron 2 of 7)	intron (NM_175406, intron 2 of 7)	26726.0	NM_175406	242341.0	Mm.19298	NM_175406	ENSMUSG00000028238	Atp6v0d2	1620401A02Rik|AI324824|V-ATPase	ATPase, H+ transporting, lysosomal V0 subunit D2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-72522096-1	chr8	72521996	72522196	+	564.0	f1_balb.idr	intron (NM_027485, intron 1 of 2)	RMER6A|LTR|ERVK	26214.0	NM_027485	70625.0	Mm.235885	NM_027485	ENSMUSG00000045248	Med26	5730493L18Rik|AI414941|AW495270|Crsp7	mediator complex subunit 26	protein-coding	-1.52696403314699	-1.49523967873556	-1.5048333853602	-1.51271394162622	-1.52473704212565	-1.49316068248889	-1.50266158046844	-1.06847079017215	2.01069003169785	0.564432837776867	1
Merged-chr9-121308263-2	chr9	121308163	121308363	+	744.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_152160, intron 1 of 17)	MTD|LTR|ERVL-MaLR	10761.0	NR_152160	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-25283198-2	chr12	25283098	25283298	+	903.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	154024.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-33084779-2	chr13	33084679	33084879	+	634.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_173052, intron 1 of 6)	intron (NM_173052, intron 1 of 6)	676.0	NM_173052	282663.0	Mm.314490	NM_173052	ENSMUSG00000051029	Serpinb1b	6330533H24Rik|EIB|Serpin1b1|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 1b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141629547-2	chr7	141629447	141629647	+	722.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357068, intron 18 of 21)	intron (NM_001357068, intron 18 of 21)	8846.0	NR_106030	102466798.0		NR_106030	ENSMUSG00000098759	Mir7063	Gm27654|mmu-mir-7063	microRNA 7063	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83536994-2	chr6	83536894	83537094	+	617.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009610)	promoter-TSS (NM_009610)	-743.0	NM_009610	11468.0	Mm.292865	NM_009610	ENSMUSG00000059430	Actg2	ACTA3|Act-4|Act4|SMGA	actin, gamma 2, smooth muscle, enteric	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-74933639-6	chr15	74933536	74933736	+	798.638916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21415.0	NM_001164039	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	1.15079166645291	1.19736604047604	0.627179980867518	1.22888843756778	1.71352222429807	0.64161491301159	0.629797985181921	0.814008313226929	-0.0482435370806155	0.975220841634038	0.998431161219273
Merged-chr4-133625792-2	chr4	133625717	133625917	+	770.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001017968, intron 2 of 7)	intron (NM_001017968, intron 2 of 7)	7612.0	NM_001017968	503610.0	Mm.331948	NM_001017968	ENSMUSG00000037553	Zdhhc18	-	zinc finger, DHHC domain containing 18	protein-coding	1.83681825375339	2.34871751367355	1.35517267713657	2.31995317482149	1.98851813681091	2.70289510639534	2.61235005600623	2.61908154510374	1.11962462599046	0.212147196379398	0.701582707320843
Merged-chr12-99333671-4	chr12	99333584	99333784	+	720.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183186, intron 3 of 5)	intron (NM_183186, intron 3 of 5)	116390.0	NM_183186	71375.0	Mm.341972	NM_183186	ENSMUSG00000033713	Foxn3	5430426H20Rik|AA589593|AW556347|Ches1|Ches1l|HTLFL1	forkhead box N3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-83668129-4	chr17	83668044	83668244	+	977.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR23|LTR|ERV1	-36249.0	NM_153512	225030.0	Mm.223506	NM_153512	ENSMUSG00000045053	Kcng3	KV6.3|Kv10.1a|Kv10.1b	potassium voltage-gated channel, subfamily G, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-90262754-4	chr9	90262633	90262833	+	855.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 1 of 12)	L1MA4|LINE|L1	8036.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-137867778-7	chr3	137867644	137867844	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033155)	promoter-TSS (NM_001033155)	69.0	NM_001033155	70604.0	Mm.256488	NM_001033155	ENSMUSG00000074212	Dnajb14	5730496F10Rik	DnaJ heat shock protein family (Hsp40) member B14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-148547315-2	chr5	148547215	148547415	+	819.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359199, intron 3 of 6)	PB1D10|SINE|Alu	4358.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-31280903-4	chr9	31280776	31280976	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	9475.0	NM_001101597	638580.0	Mm.373655	NM_001101597		Gm7244	EG638580	predicted gene 7244	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-144588904-2	chr3	144588804	144589004	+	645.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_053102, intron 2 of 4)	MTD|LTR|ERVL-MaLR	18477.0	NM_053102	93684.0	Mm.29812	NM_053102	ENSMUSG00000037072	Selenof	9430015P09Rik|Sep15	selenoprotein F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99449488-3	chr15	99449394	99449594	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001884, intron 1 of 12)	intron (NM_001001884, intron 1 of 12)	8254.0	NM_001001884	380969.0	Mm.22915	NM_001001884	ENSMUSG00000023009	Nckap5l	C230021P08Rik|Cep169	NCK-associated protein 5-like	protein-coding	0.618188647385723	0.358718707863734	0.350814390874856	0.344682280965686	1.02329602865779	0.567958309365311	0.543629452894571	1.18999674263293	2.9263310641685	0.107544415763028	1
Merged-chr4-117914231-2	chr4	117914131	117914331	+	563.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146152, intron 1 of 19)	intron (NM_146152, intron 1 of 19)	768.0	NM_146152	230673.0	Mm.287810	NM_146152	ENSMUSG00000033365	Ipo13	Imp13|Kap13|Ranbp13	importin 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-89111031-2	chr18	89110931	89111131	+	625.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175542, intron 43 of 48)	intron (NM_175542, intron 43 of 48)	-86396.0	NM_178687	225825.0	Mm.139293	NM_178687	ENSMUSG00000034028	Cd226	BC051526|DNAM-1|DNAM1|Pta1|TLiSA1	CD226 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-25597064-4	chr8	25596971	25597171	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173012, intron 1 of 10)	CpG	416.0	NM_173012	270035.0	Mm.268349	NM_173012	ENSMUSG00000037363	Letm2	6030453H13|D030041N04Rik	leucine zipper-EF-hand containing transmembrane protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-172399480-5	chr2	172399375	172399575	+	887.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080820, intron 1 of 6)	intron (NM_001080820, intron 1 of 6)	5681.0	NM_001276423	320664.0	Mm.210195	NM_001033538	ENSMUSG00000074570	Cass4	F730031O20Rik	Cas scaffolding protein family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-155273525-3	chr2	155273408	155273608	+	957.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2856.0	NM_025735	66734.0	Mm.196239	NM_025735	ENSMUSG00000027602	Map1lc3a	1010001H21Rik|4922501H04Rik|LC3|LC3a	microtubule-associated protein 1 light chain 3 alpha	protein-coding	-0.822462705120757	-0.812556056629881	-0.815976647844307	-0.818416662570211	-0.546430838844095	-0.809717413752937	-0.815278756332027	-0.175246647052055	3.16603683725386	0.281247844440664	1
Merged-chr6-143293527-2	chr6	143293427	143293627	+	661.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_027803, intron 3 of 3)	5S|rRNA|rRNA	47639.0	NR_027803	52285.0	Mm.354898	NM_001033129		D6Ertd474e	1700001I24Rik|AU023129	DNA segment, Chr 6, ERATO Doi 474, expressed	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-11277405-3	chr12	11277303	11277503	+	874.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361252, intron 4 of 9)	intron (NM_001361252, intron 4 of 9)	11517.0	NM_025695	67241.0	Mm.173953	NM_025695	ENSMUSG00000020608	Smc6	2810489L22Rik|3830418C19Rik|AA990493|AU018782|AW742439|SMC-6|Smc6l1|mKIAA4103	structural maintenance of chromosomes 6	protein-coding	-1.53362919331644	-1.50201671710775	-1.51157659084044	-1.08120497225282	-1.53141005593807	-1.49994505258991	-1.50941244497383	-1.51802371459528	-1.94474658522739	0.577200604274218	1
Merged-chr19-11803220-4	chr19	11803109	11803309	+	898.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286543, intron 2 of 11)	B3|SINE|B2	16194.0	NM_001286543	20908.0	Mm.272264	NM_011502	ENSMUSG00000041488	Stx3	Syn-3	syntaxin 3	protein-coding	2.02045945215718	2.70466030381968	2.0061331506676	3.27503420758375	2.63054024129855	2.44878964662514	3.11354405079943	2.85554776301282	0.314469167666903	0.683731157405814	0.9962038244683
Merged-chr4-128638683-3	chr4	128638587	128638787	+	920.9722289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16015.0	NM_001195130	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	1.75131652185925	1.52827863231731	1.15539941017068	1.9361355264035	1.58996947906206	1.38125848976454	1.16242988050908	0.938227683004986	-1.2148546676277	0.32047387625491	0.822871522419802
Merged-chr6-29793916-2	chr6	29793816	29794016	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001171000, intron 1 of 16)	B1_Mus2|SINE|Alu	25473.0	NM_001171000	74340.0	Mm.210899	NM_021414	ENSMUSG00000029772	Ahcyl2	4631427C17Rik|AI227036|Adohcyase3|mKIAA0828	S-adenosylhomocysteine hydrolase-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-77835945-4	chr9	77835844	77836044	+	773.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	81409.0	NM_010295	14629.0	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-40143800-2	chr10	40143700	40143900	+	836.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A2|LTR|ERVL-MaLR	-1546.0	NM_001114332	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-89359805-4	chr15	89359700	89359900	+	831.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001115132, intron 1 of 19)	intron (NM_001115132, intron 1 of 19)	4081.0	NM_001271601	52683.0	Mm.143167	NM_001115132	ENSMUSG00000008690	Ncaph2	-	non-SMC condensin II complex, subunit H2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-62558558-4	chr13	62558472	62558672	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162911)	promoter-TSS (NM_001162911)	57.0	NM_175252	77117.0	Mm.440905	NM_175252	ENSMUSG00000074865	Zfp934	6720457D02Rik	zinc finger protein 934	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-118706851-1	chr7	118706751	118706951	+	816.0	f1_balb.idr	Intergenic	Intergenic	-1113.0	NM_019580	56209.0	Mm.273142	NM_019580	ENSMUSG00000033917	Gde1	1200003M13Rik|Mir16|RGS16	glycerophosphodiester phosphodiesterase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-88722331-2	chr5	88722231	88722431	+	570.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026735, intron 1 of 5)	intron (NM_026735, intron 1 of 5)	1460.0	NM_026735	68473.0	Mm.35764	NM_026735	ENSMUSG00000006262	Mob1b	1110003E08Rik|AU015450|B230364F10|Mobkl1a	MOB kinase activator 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-156525216-2	chr2	156525142	156525342	+	563.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_013510, exon 15 of 22)	exon (NM_013510, exon 15 of 22)	-22334.0	NM_026661	68295.0	Mm.253648	NM_026661	ENSMUSG00000027628	Aar2	0610011L14Rik	AAR2 splicing factor homolog	protein-coding	0.77031821390481	1.47482188338297	0.689247807485126	0.487629342010686	1.00506320742358	0.721005740326262	0.859424650878804	0.488923293436078	-0.682658430425098	0.663602571383531	1
Merged-chr3-108445231-4	chr3	108445122	108445322	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001204979)	promoter-TSS (NM_001204979)	37.0	NM_011319	20226.0	Mm.28688	NM_011319	ENSMUSG00000068739	Sars	Sars1|Strs|serRS	seryl-aminoacyl-tRNA synthetase	protein-coding	5.02843491343047	4.43585600515568	5.5276682702768	5.37182724738906	5.06478871125544	5.09527898909532	5.39656005652382	5.03106451018292	-0.00224477426426161	0.994510203732812	0.998431161219273
Merged-chr6-134920395-4	chr6	134920320	134920520	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009875)	promoter-TSS (NM_009875)	19.0	NM_009875	12576.0	Mm.2958	NM_009875	ENSMUSG00000003031	Cdkn1b	AA408329|AI843786|Kip1|p27|p27Kip1	cyclin-dependent kinase inhibitor 1B	protein-coding	5.97315134054858	6.3030530589215	6.63546686451544	5.83866526428342	5.99614872744907	5.89747999877562	6.43063303219163	5.70701798961082	-0.202116161053036	0.428105898318789	0.903062291362085
Merged-chr4-123916401-2	chr4	123916301	123916501	+	974.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4_|SINE|ID	-1032.0	NM_017475	54170.0	Mm.220922	NM_017475	ENSMUSG00000028646	Rragc	AU041672|Gtr2|RAGC|TIB929|YGR163W	Ras-related GTP binding C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-24266699-4	chr5	24266569	24266769	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9141.0	NR_030454	735274.0		NR_030454	ENSMUSG00000106252	Mir684-1	Mirn684-1	microRNA 684-1	ncRNA	0.975092510956829	1.65716943718581	1.73862374458232	1.68685556854678	0.979334232192475	1.49847958574462	2.08874237004659	2.18858813434555	0.710348648611994	0.557640293698326	0.960321604678676
Merged-chr1-44101643-3	chr1	44101551	44101751	+	903.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029368, intron 2 of 7)	intron (NM_029368, intron 2 of 7)	790.0	NM_029368	75623.0	Mm.348017	NM_029368	ENSMUSG00000026049	Tex30	1700029F09Rik|3110030D08Rik	testis expressed 30	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-149068392-4	chr5	149068285	149068485	+	899.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15328.0	NM_010439	15289.0	Mm.207047	NM_010439	ENSMUSG00000066551	Hmgb1	HMG-1|Hmg1|SBP-1|p30	high mobility group box 1	protein-coding	0.640687602973875	0.258806605230429	0.442222742492244	1.09364847681399	0.236686211659433	0.922840859002703	0.252827483770312	0.246212706008272	-1.11168534187536	0.562066098816546	1
Merged-chr1-138060313-2	chr1	138060213	138060413	+	769.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	93674.0	NR_029820	723890.0		NR_029820	ENSMUSG00000065458	Mir181b-1	Mirn181b-1|mir-181b-1	microRNA 181b-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-23067851-4	chr11	23067754	23067954	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	54467.0	NM_028672	73873.0	Mm.252406	NM_028672	ENSMUSG00000049811	Fam161a	4930430E16Rik	family with sequence similarity 161, member A	protein-coding	5.35852619601542	5.74228097024017	5.21936641710063	5.85549253386128	5.22077272095774	5.44757199130327	5.2203979293599	5.79899549918926	-0.141093031780826	0.623267899724649	0.980259659844413
Merged-chr12-102437181-4	chr12	102437084	102437284	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011175, intron 1 of 13)	RSINE1|SINE|B4	2629.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-51881365-4	chr6	51881252	51881452	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018773, intron 9 of 12)	intron (NM_018773, intron 9 of 12)	131197.0	NM_018773	54353.0	Mm.221479	NM_018773	ENSMUSG00000059182	Skap2	2610021A10Rik|AA960083|BB137539|RA70|SKAP-HOM|Saps|Scap2|mSKAP55R	src family associated phosphoprotein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-40241240-2	chr9	40241140	40241340	+	563.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27976.0	NM_001083917	235281.0	Mm.290083	NM_153522	ENSMUSG00000049281	Scn3b	1110001K16Rik|4833414B02Rik|Scnb3	sodium channel, voltage-gated, type III, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-122009703-4	chr14	122009585	122009785	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026861, intron 8 of 8)	ORR1D2|LTR|ERVL-MaLR	-24989.0	NM_001037744	223262.0	Mm.297637	NM_001037744	ENSMUSG00000071229	Timm8a2	-	translocase of inner mitochondrial membrane 8A2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-12003732-2	chr19	12003632	12003832	+	877.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT2C2|LTR|ERVL	33008.0	NM_146680	258675.0	Mm.271517	NM_146680	ENSMUSG00000067529	Olfr1423	MOR239-3	olfactory receptor 1423	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-28263263-2	chr3	28263163	28263363	+	966.2000119999999	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163007)	promoter-TSS (NM_001163007)	49.0	NM_026910	665113.0	Mm.126193	NM_026910	ENSMUSG00000027692	Tnik	1500031A17Rik|4831440I19Rik|AI451411|C530008O15Rik|C630040K21Rik	TRAF2 and NCK interacting kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-74469195-3	chr11	74469084	74469284	+	822.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001015046, intron 3 of 24)	ID_B1|SINE|B4	104513.0	NM_001011851	258153.0	Mm.376124	NM_001011851	ENSMUSG00000058275	Olfr412	MOR127-5P	olfactory receptor 412	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-131767701-4	chr2	131767622	131767822	+	857.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	79934.0	NR_029381	414081.0	Mm.246905	NR_029381	ENSMUSG00000086822	5330413P13Rik	-	RIKEN cDNA 5330413P13 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-151979953-7	chr2	151979849	151980049	+	962.507935	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146127, intron 1 of 1)	CpG	270.0	NM_146127	73847.0	Mm.272444	NM_028666	ENSMUSG00000027459	Fam110a	1700008J10Rik|5430432M24Rik|AI747080	family with sequence similarity 110, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107728615-2	chr9	107728515	107728715	+	686.1999509999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18140.0	NM_011349	20350.0	Mm.12903	NM_011349	ENSMUSG00000034684	Sema3f	Sema4|Semak	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71344482-1	chr8	71344382	71344582	+	841.0	f1_balb.idr	intron (NM_001142322, intron 19 of 39)	RSINE1|SINE|B4	-22366.0	NM_001145780	67023.0	Mm.41890	NM_025917	ENSMUSG00000002395	Use1	2010315L10Rik|5730403H22Rik|AV002165|D12|Ed2|Q-snare|p31	unconventional SNARE in the ER 1 homolog (S. cerevisiae)	protein-coding	-0.914587585352826	-1.14968844836017	-1.16012564310979	-1.16869906563582	-0.801023986531728	-1.14742666471813	-1.15776289099527	-1.16716442710272	0.46649237519341	0.890119923761052	1
Merged-chr1-45881534-4	chr1	45881433	45881633	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44061.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-50736330-3	chr16	50736228	50736428	+	847.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3555.0	NR_028300	68190.0	Mm.139089	NR_028300		Dubr	5330426P16Rik|Dum	Dppa2 upstream binding RNA	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27021441-1	chr17	27021341	27021541	+	548.0	f1_balb.idr	intron (NM_007523, intron 4 of 5)	intron (NM_007523, intron 4 of 5)	3406.0	NM_001251881	70772.0	Mm.440437	NM_027544	ENSMUSG00000048731	Ggnbp1	0610031G08Rik|mdf	gametogenetin binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-86949698-3	chr12	86949584	86949784	+	791.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173735, intron 1 of 3)	intron (NM_173735, intron 1 of 3)	2341.0	NM_001289432	217732.0	Mm.22337	NM_173735	ENSMUSG00000034157	Cipc	2310044G17Rik|AI842544|AI853744|Kiaa1737|mKIAA1737	CLOCK interacting protein, circadian	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-143056757-2	chr7	143056657	143056857	+	612.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133655, intron 1 of 7)	intron (NM_133655, intron 1 of 7)	-3071.0	NR_110354	97423.0	Mm.5250	NM_133790	ENSMUSG00000059277	R74862	-	expressed sequence R74862	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-35031423-2	chr7	35031323	35031523	+	931.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008820, exon 12 of 15)	exon (NM_008820, exon 12 of 15)	25143.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-8666259-2	chr4	8666150	8666350	+	603.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24156.0	NM_001277149	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-100612061-4	chr15	100611947	100612147	+	805.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3063.0	NR_045701	78445.0	Mm.44383	NR_045701	ENSMUSG00000097093	C330013E15Rik	-	RIKEN cDNA C330013E15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-89282275-3	chr6	89282176	89282376	+	853.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131021, intron 1 of 3)	L1M4|LINE|L1	3449.0	NR_131021	75131.0	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	Gm44205	RIKEN cDNA 4930512J16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-34517415-4	chr19	34517301	34517501	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111100, intron 3 of 9)	intron (NM_001111100, intron 3 of 9)	10073.0	NM_001111100	16889.0	Mm.157545	NM_021460	ENSMUSG00000024781	Lipa	AA960673|Lal|Lip-1|Lip1	lysosomal acid lipase A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-145857647-3	chr6	145857539	145857739	+	944.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_024469)	TTS (NM_024469)	7781.0	NM_024469	79362.0	Mm.154529	NM_024469	ENSMUSG00000030256	Bhlhe41	6430520M22Rik|Bhlhb2l|Bhlhb3|DEC2|Sharp1	basic helix-loop-helix family, member e41	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-147892423-2	chr5	147892323	147892523	+	877.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357002, intron 2 of 5)	intron (NM_001357002, intron 2 of 5)	2392.0	NM_001357002	71706.0	Mm.153218	NM_027872	ENSMUSG00000029650	Slc46a3	1200006F02Rik	solute carrier family 46, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-123859374-6	chr8	123859190	123859390	+	967.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_028536, exon 2 of 4)	exon (NM_028536, exon 2 of 4)	919.0	NM_028536	73420.0	Mm.157746	NM_028536	ENSMUSG00000031971	Ccsap	1700054N08Rik|AI853424	centriole, cilia and spindle associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-48981235-4	chr13	48981124	48981324	+	882.216675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13112.0	NR_015601	68128.0	Mm.426304	NR_015601		Fam120aos	C030044B11Rik	family with sequence similarity 120A, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-47273528-2	chr4	47273428	47273628	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009928, intron 14 of 39)	PB1D10|SINE|Alu	65516.0	NM_009928	12819.0	Mm.233547	NM_009928	ENSMUSG00000028339	Col15a1	-	collagen, type XV, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-25096200-4	chr12	25096124	25096324	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010496)	promoter-TSS (NM_010496)	-132.0	NM_010496	15902.0	Mm.34871	NM_010496	ENSMUSG00000020644	Id2	AI255428|C78922|Idb2|bHLHb26	inhibitor of DNA binding 2	protein-coding	7.87393918028416	7.77121345189326	7.98598693449528	7.5129415801078	7.81336577228887	7.99382776220469	7.46432708992275	7.89912759984456	0.00937415329207928	0.95144226763129	0.998431161219273
Merged-chr1-35759834-3	chr1	35759729	35759929	+	639.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-308571.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-165768490-4	chr1	165768391	165768591	+	897.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149310, intron 2 of 4)	B4A|SINE|B4	4733.0	NM_011804	433375.0	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-46853614-4	chr1	46853505	46853705	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172653)	promoter-TSS (NM_172653)	13.0	NM_001356416	227059.0	Mm.233889	NM_172653	ENSMUSG00000025986	Slc39a10	2900042E17Rik|5430433I10|Zip10|mKIAA1265	solute carrier family 39 (zinc transporter), member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-90234672-4	chr11	90234548	90234748	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3b|LINE|CR1	-14828.0	NM_026178	67468.0	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-130810642-2	chr7	130810542	130810742	+	760.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081038, intron 10 of 15)	intron (NM_001081038, intron 10 of 15)	36573.0	NM_001081038	330660.0	Mm.271550	NM_001081038	ENSMUSG00000040298	Btbd16	E330040A16Rik	BTB (POZ) domain containing 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-45183981-2	chr9	45183881	45184081	+	745.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_145403, intron 4 of 12)	intron (NM_145403, intron 4 of 12)	-11785.0	NM_001198971	408059.0	Mm.249297	NM_001198971	ENSMUSG00000091996	BC049352	SMIM35	cDNA sequence BC049352	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-75045506-2	chr5	75045406	75045606	+	652.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028850)	promoter-TSS (NM_028850)	-865.0	NM_028850	74277.0	Mm.239814	NM_028850	ENSMUSG00000029229	Chic2	1700081B18Rik|4930502K01Rik|BTL	cysteine-rich hydrophobic domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-36717659-4	chr16	36717588	36717788	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285791, intron 5 of 6)	intron (NM_001285791, intron 5 of 6)	23710.0	NM_001285791	106347.0	Mm.17807	NM_134109	ENSMUSG00000022900	Ildr1	AU041483|AU044638	immunoglobulin-like domain containing receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72958439-4	chr6	72958346	72958546	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039392)	promoter-TSS (NM_001039392)	37.0	NM_025284	19240.0	Mm.3532	NM_025284	ENSMUSG00000079523	Tmsb10	Ptmb10|Tb10	thymosin, beta 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-43108294-1	chr9	43108194	43108394	+	644.0	f1_c57bl6.idr	TTS (NM_001034863)	TTS (NM_001034863)	-2576.0	NM_027144	69632.0	Mm.275266	NM_027144	ENSMUSG00000059495	Arhgef12	2310014B11Rik|AU019857|Larg|mKIAA0382	Rho guanine nucleotide exchange factor (GEF) 12	protein-coding	-0.0695478922334627	-0.0508026222941538	-0.0569097667300298	0.607773533807586	0.0898704615359749	-0.0494303366022346	-0.0555600378745289	0.79294041428748	0.676114861325132	0.763800837000443	1
Merged-chr5-86085163-4	chr5	86085063	86085263	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310639, intron 3 of 7)	intron (NM_001310639, intron 3 of 7)	13417.0	NM_001310639	56792.0	Mm.131237	NM_019992	ENSMUSG00000029254	Stap1	AI586015|Brdg1|STAP-1	signal transducing adaptor family member 1	protein-coding	4.66146355631596	5.42112896013485	5.29655743200068	5.02012519072086	3.96611537824926	5.04329807067153	3.67702215388061	3.73511268575952	-1.11732665776761	0.00686010087532008	0.0841016590280214
Merged-chr14-101600607-2	chr14	101600507	101600707	+	696.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081278, intron 1 of 18)	intron (NM_001081278, intron 1 of 18)	8584.0	NM_001081278	210789.0	Mm.320639	NM_173380	ENSMUSG00000033083	Tbc1d4	5930406J04Rik|A930035N22|AV295684|As160	TBC1 domain family, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-50875294-2	chr2	50875194	50875394	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19A|LTR|ERVK	-34390.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98399029-2	chr11	98398929	98399129	+	572.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033537, intron 1 of 7)	intron (NM_001033537, intron 1 of 7)	1461.0	NM_001033537	320655.0	Mm.86519	NM_001033537	ENSMUSG00000038208	Pgap3	CAB2|D430035D22Rik|Perld1	post-GPI attachment to proteins 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-37891534-2	chr1	37891434	37891634	+	692.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356482, intron 1 of 4)	B3|SINE|B2	1057.0	NM_027098	107734.0	Mm.26614	NM_027098	ENSMUSG00000026087	Mrpl30	2310001L22Rik|L30mt|MRP-L28|MRP-L30|Rpml28	mitochondrial ribosomal protein L30	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-45345204-4	chr8	45345105	45345305	+	907.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153535, intron 8 of 13)	intron (NM_153535, intron 8 of 13)	-12009.0	NM_133969	102294.0	Mm.245297	NM_133969	ENSMUSG00000079057	Cyp4v3	AU043077|AW111961|Cyp4v2	cytochrome P450, family 4, subfamily v, polypeptide 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-95333591-2	chr8	95333531	95333731	+	694.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133954, intron 2 of 6)	intron (NM_133954, intron 2 of 6)	1347.0	NM_133954	101985.0	Mm.29069	NM_133954	ENSMUSG00000031792	Usb1	AA960436	U6 snRNA biogenesis 1	protein-coding	0.148672519338409	-0.0647946405309998	0.209375654868068	0.0667944829882734	0.154375069018176	-0.0639925384754223	0.327099347312839	-0.0705513990999582	0.066159332592911	0.974447405676468	1
Merged-chr11-8424416-4	chr11	8424282	8424482	+	902.2291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	240153.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	3.02038123619247	3.82779506017773	2.84392860875621	3.55423192040599	1.97989703257275	2.43323266708234	1.72479106360528	1.66558635001408	-2.72010663535693	0.000464046585928613	0.0105181944672006
Merged-chr19-37147359-4	chr19	37147265	37147465	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198300, intron 2 of 10)	PB1D9|SINE|Alu	-26478.0	NR_045329	319931.0	Mm.446730	NR_045329	ENSMUSG00000097591	A330032B11Rik	-	RIKEN cDNA A330032B11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21241513-4	chr9	21241409	21241609	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2177.0	NM_001110306	50868.0	Mm.248266	NM_016679	ENSMUSG00000003308	Keap1	INRF2|mKIAA0132	kelch-like ECH-associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-99525627-2	chr6	99525527	99525727	+	602.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4634.0	NM_001347345	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-90058558-2	chr13	90058458	90058658	+	813.416687	f1_balb.idr|f1_c57bl6.idr	intron (NM_028012, intron 3 of 7)	Charlie24|DNA|hAT-Charlie	31050.0	NM_028012	108138.0	Mm.37531	NM_028012	ENSMUSG00000021615	Xrcc4	2310057B22Rik|AW413319|AW545101	X-ray repair complementing defective repair in Chinese hamster cells 4	protein-coding	-2.18138529563533	-2.15523716995652	-2.1631445789866	-2.16963996020037	-2.05513010215571	-2.15352360143315	-2.16135451490766	-2.16847729006863	0.759018020146679	0.829933115115583	1
Merged-chr11-106562267-2	chr11	106562167	106562367	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198292, intron 2 of 11)	intron (NM_198292, intron 2 of 11)	50663.0	NM_198292	21763.0	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-46009121-6	chr9	46009054	46009254	+	723.638916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357241, intron 1 of 5)	RMER10A|LTR|ERVL	3536.0	NM_001357241	18475.0	Mm.200859	NM_008775	ENSMUSG00000003131	Pafah1b2	2610005M20Rik|AI747451|AU021353|Pafahb|mus[b]	platelet-activating factor acetylhydrolase, isoform 1b, subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-112266391-7	chr5	112266308	112266508	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001312893, intron 4 of 5)	intron (NM_001312893, intron 4 of 5)	-10283.0	NM_001326590	22022.0	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10880260-4	chr19	10880150	10880350	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134142, intron 1 of 3)	intron (NM_134142, intron 1 of 3)	1493.0	NM_134142	68539.0	Mm.251890	NM_134142	ENSMUSG00000034659	Tmem109	1110006I15Rik|AA958958|C77652	transmembrane protein 109	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-117156631-2	chr4	117156531	117156731	+	583.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009098)	promoter-TSS (NM_009098)	-499.0	NM_009098	20116.0	Mm.260904	NM_009098	ENSMUSG00000047675	Rps8	-	ribosomal protein S8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-107547089-2	chr11	107546989	107547189	+	610.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198298)	promoter-TSS (NM_198298)	-871.0	NM_198298	78455.0	Mm.272047	NM_198298	ENSMUSG00000020721	Helz	3110078M01Rik|9430093I07Rik|9630002H22Rik|AI851979|DRHC	helicase with zinc finger domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-84293143-4	chr18	84293036	84293236	+	913.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033341, intron 8 of 8)	intron (NM_001033341, intron 8 of 8)	204978.0	NM_146090	225791.0	Mm.147052	NM_146090	ENSMUSG00000049090	Zadh2	C530046K17Rik|PTGR-3|Pthr3	zinc binding alcohol dehydrogenase, domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-92854902-4	chr8	92854801	92855001	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173014)	promoter-TSS (NM_173014)	-432.0	NM_173014	270084.0	Mm.21463	NM_173014	ENSMUSG00000033192	Lpcat2	1-AGPAT 11|A330042H22|Aytl1|Aytl1a|lpafat1|lysoPAFAT|lysoPAFAT/LPCAT2	lysophosphatidylcholine acyltransferase 2	protein-coding	6.23160579504776	6.00771286566159	5.40713373170021	6.52120113108165	6.30967795615645	6.11229134364952	5.59528723332182	6.45311048949251	0.0588488228730109	0.829411106696098	0.998431161219273
Merged-chr7-44309412-2	chr7	44309312	44309512	+	938.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001034115)	promoter-TSS (NM_001034115)	-852.0	NM_001034115	243961.0	Mm.360368	NM_001034115	ENSMUSG00000038738	Shank1	-	SH3 and multiple ankyrin repeat domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-32636165-3	chr9	32636056	32636256	+	849.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59886.0	NM_011808	23871.0	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-143210901-3	chr4	143210795	143210995	+	686.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001256380, intron 1 of 7)	intron (NM_001256380, intron 1 of 7)	1814.0	NM_001081355	110593.0	Mm.332020	NM_001081355	ENSMUSG00000057637	Prdm2	4833427P12Rik|E330024L24Rik|Gm1033|Gm19732|KMT8|Riz|Riz1|Znfpr1c1	PR domain containing 2, with ZNF domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-123808766-4	chr9	123808673	123808873	+	941.9833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030712, intron 1 of 1)	intron (NM_030712, intron 1 of 1)	2296.0	NM_030712	80901.0	Mm.124289	NM_030712	ENSMUSG00000048521	Cxcr6	BB217514|BONZO|STRL33	chemokine (C-X-C motif) receptor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16974376-1	chr7	16974276	16974476	+	546.0	f0_balb.idr	Intergenic	Intergenic	14697.0	NM_001007569	71691.0	Mm.275673	NM_001007569	ENSMUSG00000041141	Pnmal1	0710005I19Rik|4930488B01Rik|AI844408|Pnma8a|R74771	PNMA-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-71251506-3	chr11	71251420	71251620	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027858, intron 8 of 12)	RMER21A|LTR|ERV1	-20787.0	NM_001040696	637515.0	Mm.390402	NM_001039680	ENSMUSG00000070390	Nlrp1b	Nalp1b	NLR family, pyrin domain containing 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-87623929-4	chr16	87623836	87624036	+	831.895813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1VL4|LINE|L1	70606.0	NM_144854	224419.0	Mm.194466	NM_144854	ENSMUSG00000025610	Map3k7cl	C21orf7|ORF63|Tak1l	Map3k7 C-terminal like	protein-coding	1.05971866099235	0.759823683271175	1.86981407710803	1.88506592934971	1.06915307844551	1.52859990801741	0.747206533315757	0.733026709189331	-1.54708646045937	0.279620048021112	0.782875234013061
Merged-chr5-136237806-2	chr5	136237706	136237906	+	590.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001302938, intron 1 of 8)	intron (NM_001302938, intron 1 of 8)	7134.0	NM_001302939	23921.0	Mm.425294	NM_018825	ENSMUSG00000005057	Sh2b2	Aps	SH2B adaptor protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-122295737-4	chr3	122295648	122295848	+	984.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2045.0	NR_030439	791077.0		NR_030439	ENSMUSG00000076456	Mir760	Mirn760|mir-760|mmu-mir-760	microRNA 760	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80395256-2	chr10	80395156	80395356	+	711.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_013595, intron 2 of 6)	intron (NM_013595, intron 2 of 6)	4275.0	NM_013595	17192.0	Mm.7142	NM_013595	ENSMUSG00000035478	Mbd3	AI181826|AU019209	methyl-CpG binding domain protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-89221015-4	chr9	89220919	89221119	+	886.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359993, intron 2 of 2)	intron (NM_001359993, intron 2 of 2)	9635.0	NM_001359993	107885.0	Mm.486274	NM_026829	ENSMUSG00000066442	Mthfs	1110034I12Rik|2310020H23Rik|AI119695	5, 10-methenyltetrahydrofolate synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-143818182-1	chr5	143818082	143818282	+	1000.0	f0_balb.idr	Intergenic	CpG	-53680.0	NM_013557	15467.0	Mm.389709	NM_013557	ENSMUSG00000029613	Eif2ak1	HCR|Hri	eukaryotic translation initiation factor 2 alpha kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120515694-4	chr11	120515564	120515764	+	983.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15063.0	NM_008101	14527.0	Mm.22329	NM_008101	ENSMUSG00000025127	Gcgr	GR	glucagon receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-57223261-2	chr17	57223161	57223361	+	612.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_009778, exon 12 of 41)	exon (NM_009778, exon 12 of 41)	4875.0	NM_009778	12266.0	Mm.19131	NM_009778	ENSMUSG00000024164	C3	AI255234|ASP|HSE-MSF|Plp	complement component 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-89257066-4	chr6	89256971	89257171	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28654.0	NR_131021	75131.0	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	Gm44205	RIKEN cDNA 4930512J16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96302816-4	chr3	96302716	96302916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8847.0	NM_010186	14129.0	Mm.150	NM_010186	ENSMUSG00000015947	Fcgr1	AI323638|AV092959|CD64|FcgammaRI|IGGHAFC	Fc receptor, IgG, high affinity I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-8011756-2	chr10	8011656	8011856	+	563.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	-55633.0	NM_138667	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-110338852-2	chr10	110338752	110338952	+	587.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-261798.0	NR_028438	109335.0	Mm.367727	NR_028438	ENSMUSG00000112398	9230102K24Rik	-	RIKEN cDNA 9230102K24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-173366189-4	chr1	173366033	173366233	+	630.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053199, intron 1 of 8)	intron (NM_053199, intron 1 of 8)	1562.0	NM_053199	94332.0	Mm.330524	NM_053199	ENSMUSG00000005338	Cadm3	BIgR|Igsf4b|Necl-1|Necl1|SynCAM3|Tsll1	cell adhesion molecule 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-79351467-2	chr12	79351367	79351567	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	54116.0	NM_001252562	19363.0	Mm.341756	NM_009014	ENSMUSG00000059060	Rad51b	AI553500|R51H2|Rad51l1|mREC2	RAD51 paralog B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5541318-3	chr17	5541218	5541418	+	728.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	48718.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80744447-4	chr10	80744377	80744577	+	990.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-2202.0	NM_007460	11776.0	Mm.27082	NM_007460	ENSMUSG00000020198	Ap3d1	AA407035|Ap3d|Bolvr|mBLVR1|mh|mocha	adaptor-related protein complex 3, delta 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-27790378-1	chr5	27790278	27790478	+	1000.0	f1_balb.idr	intron (NM_018878, intron 1 of 20)	intron (NM_018878, intron 1 of 20)	1172.0	NM_018878	55982.0	Mm.277190	NM_018878	ENSMUSG00000002221	Paxip1	D5Ertd149e|PTIP	PAX interacting (with transcription-activation domain) protein 1	protein-coding	-1.33529739681439	-1.30591854857254	-1.3158428643115	-1.1678401991129	-0.950618823128122	-1.30376790795164	-1.31359621676301	-1.3225357656552	1.06732360251078	0.756380064897408	1
Merged-chr1-171211732-1	chr1	171211632	171211832	+	591.333313	f1_balb.idr	Intergenic	RMER19C|LTR|ERVK	-2238.0	NM_009803	12355.0	Mm.486506	NM_009803	ENSMUSG00000005677	Nr1i3	AA209988|AI551208|CAR|CAR-beta|Care2|ESTM32|MB67	nuclear receptor subfamily 1, group I, member 3	protein-coding	1.09560624216576	1.20078438704058	0.949619437475336	1.58386138317541	1.88089255378521	1.20820511189716	1.87238784946456	1.9016982703736	1.86310396216336	0.125702491398435	0.55570320257864
Merged-chr7-132315625-4	chr7	132315527	132315727	+	921.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028578)	promoter-TSS (NR_028578)	-37.0	NR_028578	100043682.0	Mm.482794	NR_028578	ENSMUSG00000109270	Gm10584	-	predicted gene 10584	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-57591469-4	chr8	57591363	57591563	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167981, intron 1 of 11)	intron (NM_001167981, intron 1 of 11)	-60290.0	NR_040698	100502619.0	Mm.393851	NR_040698		AW046200	-	expressed sequence AW046200	ncRNA	2.91586554073302	1.65467421812713	1.0713131674468	3.13156743823113	2.58241227229806	1.11606483285641	1.07959914913984	1.73805004098075	-1.41244529544127	0.224916166196569	0.716808259790979
Merged-chr19-42152158-4	chr19	42152072	42152272	+	917.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_183195)	TTS (NM_183195)	4783.0	NM_183195	277010.0	Mm.206250	NM_183195	ENSMUSG00000044345	Marveld1	AI504298|Mrvldc1	MARVEL (membrane-associating) domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-75369426-2	chr9	75369327	75369527	+	774.416687	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16_Mm|LTR|ERVK	21669.0	NM_013479	12049.0	Mm.25988	NM_013479	ENSMUSG00000032191	Bcl2l10	AA420380|AU023065|Boo|C85687|Diva	Bcl2-like 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-91957145-2	chr5	91957029	91957229	+	821.833313	f1_balb.idr|f1_c57bl6.idr	intron (NR_073442, intron 4 of 9)	B1_Mur4|SINE|Alu	5427.0	NR_073442	68098.0	Mm.159453	NM_026557	ENSMUSG00000029397	Rchy1	ARNIP|CHIMP|Pirh2|Zfp363|Znf363	ring finger and CHY zinc finger domain containing 1	protein-coding	0.933358644529968	1.03697057993501	1.50842518463808	0.97903896745539	2.66063440146565	2.87691235820696	2.25998052042299	1.80905980487574	4.30291835097307	0.000942627879589552	0.0185606935984389
Merged-chr10-30620689-2	chr10	30620589	30620789	+	631.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-2323.0	NM_025798	66847.0	Mm.46218	NM_025798	ENSMUSG00000019791	Hint3	0610010I17Rik|AV009015|HINT-3|HINT-4|HINT4	histidine triad nucleotide binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-40952512-2	chr3	40952412	40952612	+	670.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001040399, intron 1 of 9)	intron (NM_001040399, intron 1 of 9)	1881.0	NM_001040399	214048.0	Mm.46782	NM_027663	ENSMUSG00000025762	Larp1b	1700108L22Rik|4933421B21Rik|AA690246|Larp2	La ribonucleoprotein domain family, member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-8688452-2	chr6	8688352	8688552	+	756.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252266, intron 5 of 11)	RLTR51A_Mm|LTR|ERVK?	70006.0	NM_001252266	15893.0	Mm.275683	NM_010492	ENSMUSG00000062995	Ica1	69kDa|ICA69	islet cell autoantigen 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-72920253-1	chr17	72920153	72920353	+	599.0	f0_balb.idr	intron (NM_029999, intron 1 of 2)	intron (NM_029999, intron 1 of 2)	1948.0	NM_029999	77889.0	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-34682856-3	chr12	34682732	34682932	+	822.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271386, intron 3 of 27)	Lx8b|LINE|L1	-153943.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	1.86104675948271	2.41206865677891	1.5913938491907	1.8427400851995	1.31990823959837	1.65423759837911	2.4317299864623	1.55758388488575	-0.381111428071742	0.71006045376326	0.998431161219273
Merged-chr8-22812116-2	chr8	22812016	22812216	+	612.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6462.0	NM_001122820	64933.0	Mm.390023	NM_029505	ENSMUSG00000031539	Ap3m2	5830445E16Rik|AP-3B	adaptor-related protein complex 3, mu 2 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-160861371-3	chr1	160861273	160861473	+	972.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45038.0	NM_001024952	381305.0	Mm.329667	NM_001024952	ENSMUSG00000040423	Rc3h1	5730557L09Rik|Gm551|N28103|mKIAA2025	RING CCCH (C3H) domains 1	protein-coding	1.08103680226203	1.19647594792332	1.16085290303608	2.31704292694383	2.68787386788465	2.1042078946445	2.51493906264257	3.01705792490231	2.55763240154324	0.0169730972681223	0.158930713597501
Merged-chr4-154011812-4	chr4	154011728	154011928	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_201226)	promoter-TSS (NM_201226)	25.0	NM_201226	72946.0	Mm.260690	NM_201226	ENSMUSG00000029028	Lrrc47	2900010D03Rik|AA960559|mKIAA1185	leucine rich repeat containing 47	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-22858684-2	chr11	22858584	22858784	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001169114, intron 1 of 1)	intron (NM_001169114, intron 1 of 1)	1051.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-4349790-4	chr18	4349732	4349932	+	974.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007746, intron 1 of 7)	intron (NM_007746, intron 1 of 7)	3121.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-34432137-2	chr4	34432037	34432237	+	583.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-118478.0	NM_001007589	433693.0	Mm.389532	NM_026019	ENSMUSG00000028291	Akirin2	2700059D21Rik|AA114675|AA522011|AU019887|Akirin-2	akirin 2	protein-coding	0.472878175726137	1.46510079918763	0.297903739189122	0.287186762255079	0.47942471751761	1.6678935999766	0.30092284067123	0.289076901351753	0.379608422949848	0.830016374013169	0.998431161219273
Merged-chr10-62182167-2	chr10	62182067	62182267	+	946.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12060.0	NR_106122	102465767.0		NR_106122	ENSMUSG00000099185	Mir7662	Gm27876|mmu-mir-7662	microRNA 7662	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-67092484-3	chr15	67092372	67092572	+	907.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	84410.0	NM_009177	20442.0	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-9388679-4	chr11	9388560	9388760	+	897.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178259, intron 31 of 61)	intron (NM_178259, intron 31 of 61)	196718.0	NM_178259	268379.0	Mm.39270	NM_178259	ENSMUSG00000004668	Abca13	9830132L24|A930002G16Rik|AI956815	ATP-binding cassette, sub-family A (ABC1), member 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-12928375-1	chr10	12928275	12928475	+	561.0	f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-5248.0	NR_038028	320273.0	Mm.417706	NR_038027	ENSMUSG00000097378	B230208H11Rik	-	RIKEN cDNA B230208H11 gene	ncRNA	0.321779612047551	1.35711696461271	0.545163849586579	0.939222082883161	0.323635075069065	0.353041314861703	0.343599417695306	0.946994948788991	-1.73529273068162	0.344616438708721	1
Merged-chr12-51939363-2	chr12	51939263	51939463	+	667.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177171, intron 12 of 35)	intron (NM_177171, intron 12 of 35)	31958.0	NM_177171	320487.0	Mm.131941	NM_177171	ENSMUSG00000035181	Heatr5a	C230081H03Rik|D930036F22Rik|mKIAA1316	HEAT repeat containing 5A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-45690271-1	chr14	45690171	45690371	+	1000.0	f1_balb.idr	Intergenic	Intergenic	-32128.0	NM_001042719	114874.0	Mm.121918	NM_176845	ENSMUSG00000037697	Ddhd1	Mir5131|PA-PLA1	DDHD domain containing 1	protein-coding	-0.37790657608628	-0.7425209476875	-0.745752534966227	-0.748241895791257	-0.75175369388296	-0.741791734322997	-0.166202711934189	-0.747807260520129	0.813296986456869	0.785019466223198	1
Merged-chr7-132347813-4	chr7	132347684	132347884	+	902.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30556.0	NM_029935	77590.0	Mm.213582	NM_029935	ENSMUSG00000030930	Chst15	4631426J05Rik|BRAG|GalNAc4S-6ST|GalNAcS-6ST|MAd5|mKIAA0598	carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-88438085-4	chr4	88437997	88438197	+	997.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025760, intron 1 of 6)	intron (NM_025760, intron 1 of 6)	829.0	NM_025760	66775.0	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-101990493-3	chr5	101990392	101990592	+	757.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 3 of 66)	intron (NM_172882, intron 3 of 66)	79429.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	1.92728648385988	2.508252509279	1.67955814094537	2.47258385356601	2.09954222782934	3.33142235343706	3.63596451204892	2.35843365241848	1.59872989704733	0.0513344472120728	0.330779107223657
Merged-chr3-65387089-3	chr3	65386990	65387190	+	824.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026155, intron 3 of 4)	Lx9|LINE|L1	5463.0	NM_026155	67437.0	Mm.232728	NM_026155	ENSMUSG00000027828	Ssr3	0610038P07Rik|AL022999|AU022074|AW553833|TRAPG	signal sequence receptor, gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-144232556-3	chr3	144232476	144232676	+	692.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27321.0	NM_010723	16911.0	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-94186110-2	chr8	94186010	94186210	+	753.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7021.0	NM_013602	17748.0	Mm.192991	NM_013602	ENSMUSG00000031765	Mt1	MT-I|Mt-1	metallothionein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-167343881-1	chr1	167343781	167343981	+	777.200012	f0_balb.idr	Intergenic	Intergenic	-6110.0	NM_019993	56752.0	Mm.292539	NM_019993	ENSMUSG00000026687	Aldh9a1	AA139417|Abaldh|ESTM40|TMABA-DH|Tmabadh	aldehyde dehydrogenase 9, subfamily A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-125470966-4	chr1	125470836	125471036	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35209.0	NM_001205385	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-104859809-2	chr5	104859708	104859908	+	968.333374	f0_c57.idr|f1_c57bl6.idr	5' UTR (NM_001039231, exon 1 of 5)	5' UTR (NM_001039231, exon 1 of 5)	219.0	NR_155269	626391.0	Mm.385405	NM_001039231	ENSMUSG00000072774	Zfp951	C230055K05Rik|Gm38611	zinc finger protein 951	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-139169084-2	chr4	139168984	139169184	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	11571.0	NR_033543	100038595.0	Mm.385206	NR_033543	ENSMUSG00000073739	Gm16287	-	predicted gene 16287	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-137502540-4	chr5	137502421	137502621	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028753)	promoter-TSS (NM_028753)	-92.0	NM_028753	74097.0	Mm.290242	NM_028753	ENSMUSG00000029715	Pop7	0610037N12Rik|AI852017|Rpp20	processing of precursor 7, ribonuclease P family, (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-25674218-2	chr14	25674118	25674318	+	640.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19952.0	NM_134084	105675.0	Mm.41656	NM_134084	ENSMUSG00000021868	Ppif	AW457192|CyP-D|CyP-F|CypD|PPIase	peptidylprolyl isomerase F (cyclophilin F)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-5616812-3	chr18	5616723	5616923	+	880.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360981, intron 2 of 8)	L1MA8|LINE|L1	24176.0	NM_001360981	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-117802240-3	chr6	117802137	117802337	+	787.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38944.0	NM_001346649	232337.0	Mm.290847	NM_177684	ENSMUSG00000059689	Zfp637	AI646709|BC021601|Znf32	zinc finger protein 637	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-8489668-2	chr13	8489568	8489768	+	773.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_110345, intron 1 of 10)	ORR1E|LTR|ERVL-MaLR	286802.0	NM_052977	94191.0	Mm.425794	NM_052977	ENSMUSG00000052551	Adarb2	Adar3|RED2	adenosine deaminase, RNA-specific, B2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70430607-2	chr11	70430507	70430707	+	582.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1973.0	NM_001271360	216869.0	Mm.203747	NM_145429	ENSMUSG00000060216	Arrb2	AI326910|AW122872|Arr3	arrestin, beta 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-45825380-4	chr1	45825273	45825473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	30207.0	NM_028599	73674.0	Mm.270376	NM_028599	ENSMUSG00000025995	Wdr75	1300003A18Rik|2410118I19Rik|C77608	WD repeat domain 75	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-120083182-4	chr6	120083077	120083277	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10203.0	NM_016718	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-19943990-2	chr11	19943890	19944090	+	580.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_033523, intron 1 of 5)	intron (NM_033523, intron 1 of 5)	19548.0	NM_033523	114716.0	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-43233743-4	chr5	43233638	43233838	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175937, exon 1 of 11)	exon (NM_175937, exon 1 of 11)	275.0	NM_001177379	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-49748738-4	chr2	49748632	49748832	+	884.2666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008449, intron 21 of 25)	MIR|SINE|MIR	-38954.0	NM_027990	71897.0	Mm.41381	NM_027990	ENSMUSG00000026765	Lypd6b	2310010M24Rik|AW049525	LY6/PLAUR domain containing 6B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-45912080-4	chr13	45911972	45912172	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199304, intron 2 of 6)	intron (NM_001199304, intron 2 of 6)	52919.0	NM_001199304	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-144990862-2	chr7	144990742	144990942	+	745.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-50917.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	2.32991395451723	3.63846825635559	3.45913861120182	3.23196241403705	1.87737911212893	2.78939074289688	2.56068928326733	2.16915586025631	-1.59235988568674	0.0300121112017407	0.237002178717739
Merged-chr11-21247882-1	chr11	21247782	21247982	+	926.0	f1_c57bl6.idr	intron (NM_001290628, intron 1 of 22)	RMER1B|Other|Other	8850.0	NM_001290628	245944.0	Mm.170103	NM_139061	ENSMUSG00000020128	Vps54	Hcc8|Vps54l|mSLP8|wr	VPS54 GARP complex subunit	protein-coding	-1.36173557382786	-1.32815474690469	-1.48755935378017	-1.49538385882153	-1.35790290053399	-1.47596967414592	-1.48540299606242	-1.49398327616012	-0.636274386748411	0.844065881334306	1
Merged-chr4-120061932-4	chr4	120061817	120062017	+	911.275024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010657, intron 2 of 8)	intron (NM_010657, intron 2 of 8)	-99289.0	NM_007902	13615.0	Mm.284855	NM_007902	ENSMUSG00000028635	Edn2	ET-2|PPET2|VIC	endothelin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-44077047-4	chr17	44076973	44077173	+	589.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1729.0	NM_001168620	83965.0	Mm.30145	NM_032003	ENSMUSG00000023960	Enpp5	AW061004|D17Abb1e|E-NPP 5	ectonucleotide pyrophosphatase/phosphodiesterase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-4518706-3	chr7	4518595	4518795	+	560.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009406, intron 7 of 7)	intron (NM_009406, intron 7 of 7)	-2720.0	NM_011618	21955.0	Mm.358643	NM_011618	ENSMUSG00000064179	Tnnt1	AW146156|Tnt|sTnT|ssTnT	troponin T1, skeletal, slow	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-36768294-4	chr19	36768187	36768387	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31683.0	NM_016854	53412.0	Mm.24724	NM_016854	ENSMUSG00000067279	Ppp1r3c	PTG|Ppp1r5	protein phosphatase 1, regulatory (inhibitor) subunit 3C	protein-coding	5.102292700418	4.478063562732	5.07978569311389	4.95569001088436	4.55187330548156	3.35597886524727	4.42370923858235	5.01081309219115	-0.569502001674914	0.159244405541838	0.618391829904723
Merged-chr11-98925229-2	chr11	98925129	98925329	+	857.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12467.0	NM_009024	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117940411-2	chr10	117940294	117940494	+	870.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045342, intron 3 of 3)	B1_Mur3|SINE|Alu	14935.0	NR_045342	71067.0	Mm.410793	NR_045342	ENSMUSG00000112500	4933411E08Rik	-	RIKEN cDNA 4933411E08 gene	ncRNA	-0.0249128552461544	0.321782825659848	-0.0154892572568586	0.379718968681298	-0.024041842930282	0.328907858728836	-0.0144711171004092	0.385317354114019	0.0334349691168256	0.987607905691552	1
Merged-chr5-43924017-3	chr5	43923845	43924045	+	669.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55136.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	-0.0929463183248426	-0.0775144649666898	0.674141840384302	0.215496807783106	0.178351933213771	-0.0763741105548479	0.0980981024553823	-0.0857913527249771	-1.55603321311954	0.474923223698543	1
Merged-chr6-70791412-2	chr6	70791312	70791512	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009075, intron 1 of 8)	intron (NM_009075, intron 1 of 8)	763.0	NM_009075	19895.0	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-4494363-3	chr12	4494244	4494444	+	714.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17162.0	NM_010881	17977.0	Mm.301039	NM_010881	ENSMUSG00000020647	Ncoa1	KAT13A|NCoA-1|NRC-1|SRC-1|SRC-a|SRC1|bHLHe74|mNRC-1	nuclear receptor coactivator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-48423624-2	chr10	48423524	48423724	+	601.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	1364313.0	NM_001358866	14806.0	Mm.185993	NM_010349	ENSMUSG00000056073	Grik2	AW124492|C130030K03Rik|GluK2|Glur-6|Glur6|Glurbeta2	glutamate receptor, ionotropic, kainate 2 (beta 2)	protein-coding	-0.504842663442059	-0.62557934212401	-0.628449370960439	-0.241351571014012	-0.50129494272274	-0.624929498314468	-0.627818173702162	-0.348965806239806	-0.394268454656557	0.877651334349714	1
Merged-chr6-13839982-3	chr6	13839882	13840082	+	721.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001330666)	promoter-TSS (NM_001330666)	-40.0	NM_145066	64450.0	Mm.167625	NM_145066	ENSMUSG00000048216	Gpr85	2900026B03Rik	G protein-coupled receptor 85	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-38396951-4	chr18	38396779	38396979	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22028.0	NM_022996	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19314183-2	chr7	19314083	19314283	+	690.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4138.0	NM_001347586	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-178337820-4	chr1	178337744	178337944	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016805)	promoter-TSS (NM_016805)	-29.0	NR_149827	51810.0	Mm.86589	NM_016805	ENSMUSG00000039630	Hnrnpu	AA408410|AI256620|AL024194|AL024437|AW557595|C86794|Hnrpu|SAFA|Sp120|hnRNP U	heterogeneous nuclear ribonucleoprotein U	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-120210746-2	chr10	120210646	120210846	+	595.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026617, intron 1 of 6)	Lx8|LINE|L1	1920.0	NM_026617	68212.0	Mm.157426	NM_026617	ENSMUSG00000020225	Tmbim4	0610007H07Rik|AU022431	transmembrane BAX inhibitor motif containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-83571287-4	chr7	83571193	83571393	+	905.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13638.0	NM_177695	233424.0	Mm.486619	NM_177695	ENSMUSG00000038540	Tmc3	9030203A06	transmembrane channel-like gene family 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-67515982-4	chr8	67515852	67516052	+	840.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR11B|LTR|ERVK	-7902.0	NM_008674	17962.0	Mm.57193	NM_008674	ENSMUSG00000056426	Nat3	-	N-acetyltransferase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-84363406-4	chr1	84363298	84363498	+	962.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-78753.0	NM_001003948	98496.0	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4|P-CLI1	phosphotyrosine interaction domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-138145764-4	chr1	138145640	138145840	+	932.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001268286, intron 2 of 28)	intron (NM_001268286, intron 2 of 28)	29386.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-102622506-5	chr9	102622274	102622474	+	904.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081122, intron 2 of 16)	intron (NM_001081122, intron 2 of 16)	3750.0	NM_001301689	28135.0	Mm.38910	NM_001081122	ENSMUSG00000032534	Cep63	4921501M07|AL450317.13gm1|AW107703|CD20R|D9Mgc41|D9Mgc48e|ET2	centrosomal protein 63	protein-coding	-1.56355737717652	-1.81244775989375	-1.82128546162293	-1.82854501295842	-1.83962066705452	-1.81053259306168	-1.81928479966835	-1.82724555674025	-1.28500227969968	0.715751224811686	1
Merged-chr1-171193817-2	chr1	171193717	171193917	+	595.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025557, intron 1 of 2)	intron (NM_025557, intron 1 of 2)	2451.0	NM_025557	66425.0	Mm.482117	NM_025557	ENSMUSG00000038370	Pcp4l1	1500036F01Rik	Purkinje cell protein 4-like 1	protein-coding	-1.84371485578039	-1.81332821174849	-1.82251738371298	-1.83006564316449	-1.84158176955426	-1.81133687985023	-1.5312619047181	-1.82871450833159	1.60090129203521	0.64914985597185	1
Merged-chr7-121077536-2	chr7	121077436	121077636	+	929.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_021554)	TTS (NM_021554)	-3006.0	NM_030691	80719.0	Mm.160384	NM_030691	ENSMUSG00000035004	Igsf6	-	immunoglobulin superfamily, member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191876725-2	chr1	191876625	191876825	+	746.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-30056.0	NM_009579	22782.0	Mm.9024	NM_009579	ENSMUSG00000037434	Slc30a1	AI839647|C130040I11Rik|Znt1	solute carrier family 30 (zinc transporter), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-110708015-2	chr12	110707915	110708115	+	915.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CACG)n|Simple_repeat|Simple_repeat	-11620.0	NM_010480	15519.0	Mm.1843	NM_010480	ENSMUSG00000021270	Hsp90aa1	86kDa|89kDa|AL024080|AL024147|Hsp86-1|Hsp89|Hsp90|Hspca|hsp4	heat shock protein 90, alpha (cytosolic), class A member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44538051-3	chr9	44537870	44538070	+	629.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11549.0	NM_007551	12145.0	Mm.6246	NM_007551	ENSMUSG00000047880	Cxcr5	Blr1|CXC-R5|CXCR-5|Gpcr6|MDR15	chemokine (C-X-C motif) receptor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-60717486-2	chr13	60717386	60717586	+	999.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 4 of 26)	intron (NM_134062, intron 4 of 26)	68878.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-16555929-1	chr16	16555829	16556029	+	649.666687	f0_balb.idr	intron (NM_001301817, intron 1 of 16)	B1F|SINE|Alu	4290.0	NM_139232	224014.0	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-54398274-4	chr12	54398167	54398367	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6949.0	NR_033689	665239.0	Mm.26856	NR_033689		Gm7550	EG665239|Gm666	predicted gene 7550	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41772489-1	chr19	41772389	41772589	+	787.0	f1_c57bl6.idr	intron (NM_001163495, intron 10 of 10)	intron (NM_001163495, intron 10 of 10)	25528.0	NR_040320	100502871.0	Mm.394485	NR_040320		Gm19424	-	predicted gene, 19424	ncRNA	1.50250613530755	2.06764317088619	2.09117589024557	1.58120067879735	2.01722206750411	1.08245579605537	1.06232960375578	1.72142791241339	-0.860221518368156	0.46159576772117	0.921194606787634
Merged-chr3-87516860-1	chr3	87516760	87516960	+	578.0	f1_balb.idr	Intergenic	Intergenic	-8718.0	NM_001083318	27049.0	Mm.219460	NM_012051	ENSMUSG00000003382	Etv3	AI414410|METS|Pe1	ets variant 3	protein-coding	0.972629424894883	2.72842437402766	1.27695247504113	1.87052074221107	1.88801395077404	1.54523873598097	1.28618174167247	1.88116993588442	-0.640380069940777	0.576796638961337	0.965638056873227
Merged-chr2-6642488-3	chr2	6642434	6642634	+	874.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110232, intron 5 of 15)	intron (NM_001110232, intron 5 of 15)	79128.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-53264441-3	chr19	53264337	53264537	+	569.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9232.0	NR_036590	69319.0	Mm.57452	NR_036590		1700001K23Rik	-	RIKEN cDNA 1700001K23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-86883258-9	chr12	86883174	86883374	+	933.648132	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_145836, exon 1 of 1)	exon (NM_145836, exon 1 of 1)	1540.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-104235074-2	chr9	104234974	104235174	+	736.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359740, intron 5 of 56)	intron (NM_001359740, intron 5 of 56)	27856.0	NM_001359740	235567.0	Mm.217256	NM_001163026	ENSMUSG00000032560	Dnajc13	D030002L11Rik|Gm1124|RME-8|Rme8|mKIAA0678	DnaJ heat shock protein family (Hsp40) member C13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97314310-2	chr11	97314211	97314411	+	778.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1405.0	NM_025927	67036.0	Mm.5381	NM_025927	ENSMUSG00000018882	Mrpl45	2600005P05Rik|AU043542|R75241	mitochondrial ribosomal protein L45	protein-coding	0.827032982072921	1.27197010186817	0.676813510563923	0.666130339662169	1.80336490033747	0.693441811774608	1.23166010309068	1.52564887649894	2.12340267351909	0.15810442660673	0.615888607281671
Merged-chr15-82888609-4	chr15	82888514	82888714	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114140, intron 1 of 5)	intron (NM_001114140, intron 1 of 5)	9847.0	NR_027799	21378.0	Mm.417272	NR_027799		Tbrg3	TB-11	transforming growth factor beta regulated gene 3	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-81493557-3	chr7	81493477	81493677	+	639.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001193274)	TTS (NM_001193274)	348.0	NM_021492	11775.0	Mm.322894	NM_021492	ENSMUSG00000062444	Ap3b2	AI549966|AU042881|Naptb|[b]-NAP|beta-NAP|beta3B	adaptor-related protein complex 3, beta 2 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-38713441-3	chr16	38713295	38713495	+	682.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020260)	promoter-TSS (NM_020260)	-360.0	NM_020260	12549.0	Mm.370848	NM_020260	ENSMUSG00000022799	Arhgap31	5830477L08Rik|AU041750|Cdgap|D330026I07Rik	Rho GTPase activating protein 31	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-100158339-2	chr12	100158239	100158439	+	694.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290303, intron 1 of 13)	MTB|LTR|ERVL-MaLR	1314.0	NM_001290303	217827.0	Mm.224076	NM_183155	ENSMUSG00000021179	Nrde2	6720454P05Rik	nrde-2 necessary for RNA interference, domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-65863602-4	chr5	65863489	65863689	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081105)	promoter-TSS (NM_001081105)	20.0	NM_001081105	74734.0	Mm.20323	NM_001081105	ENSMUSG00000029204	Rhoh	5830400A04Rik|AU019774|Arhh	ras homolog family member H	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-22457643-3	chr9	22457587	22457787	+	788.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018739, intron 2 of 5)	intron (NM_018739, intron 2 of 5)	10669.0	NM_018739	55934.0	Mm.38235	NM_018739	ENSMUSG00000032239	Rp9	PAP-1|Rp9h	retinitis pigmentosa 9 (human)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106014398-2	chr11	106014298	106014498	+	724.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001037712, exon 4 of 13)	exon (NM_001037712, exon 4 of 13)	6195.0	NM_001037712	192775.0	Mm.343850	NM_001037712	ENSMUSG00000001901	Kcnh6	m-erg2	potassium voltage-gated channel, subfamily H (eag-related), member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167622605-2	chr2	167622505	167622705	+	746.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023230, intron 1 of 3)	intron (NM_023230, intron 1 of 3)	9400.0	NM_001311146	66589.0	Mm.278783	NM_023230	ENSMUSG00000078923	Ube2v1	0610011J09Rik|AI256840|CROC-1|CROC1|D7Bwg1382e|UEV-1	ubiquitin-conjugating enzyme E2 variant 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127842510-4	chr7	127842425	127842625	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009294, exon 3 of 11)	exon (NM_009294, exon 3 of 11)	717.0	NM_009294	20909.0	Mm.24867	NM_009294	ENSMUSG00000030805	Stx4a	Stx4|Syn-4|Syn4	syntaxin 4A (placental)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91387367-2	chr16	91387267	91387467	+	694.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347258, intron 4 of 7)	MTE2b|LTR|ERVL-MaLR	14584.0	NM_001110498	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-113621229-4	chr5	113621112	113621312	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008153, intron 1 of 2)	L4_B_Mam|LINE|RTE-X	22391.0	NM_001359060	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-93473374-2	chr2	93473274	93473474	+	965.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(ATG)n|Simple_repeat|Simple_repeat	-10424.0	NM_001136055	12521.0	Mm.4261	NM_007656	ENSMUSG00000027215	Cd82	AA682076|AL023070|C33|IA4|Kai1|Tspan27	CD82 antigen	protein-coding	-0.8140108141538	-0.612818697813291	-0.245677334745202	-0.81016631918406	-0.669031377240467	-0.802256515167543	-0.807179246992097	-0.80976096189792	-2.12758409443454	0.447183760039482	1
Merged-chr5-96979547-2	chr5	96979447	96979647	+	895.8000490000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18142.0	NM_080708	140780.0	Mm.281490	NM_080708	ENSMUSG00000034663	Bmp2k	4933417M22Rik|AA673486|AV128808|BIKE	BMP2 inducible kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-75768415-2	chr16	75768315	75768515	+	691.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1597.0	NM_030201	110920.0	Mm.26704	NM_030201	ENSMUSG00000032932	Hspa13	1600002I10Rik|AV006182|B230217N24Rik|Stch	heat shock protein 70 family, member 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140641622-2	chr5	140641522	140641722	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001308040, intron 1 of 12)	intron (NM_001308040, intron 1 of 12)	7409.0	NM_001308040	78339.0	Mm.28947	NM_175274	ENSMUSG00000036565	Ttyh3	2900029G13Rik|AI414930|TTY3|mTTY3	tweety family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-94947899-2	chr8	94947799	94947999	+	754.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	24205.0	NM_001145972	382045.0	Mm.334726	NM_001033468	ENSMUSG00000061577	Adgrg5	Gm1109|Gpr114|PGR27	adhesion G protein-coupled receptor G5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-91718708-1	chr6	91718608	91718808	+	658.0	f0_balb.idr	intron (NM_009320, intron 2 of 14)	intron (NM_009320, intron 2 of 14)	34641.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-91250707-2	chr1	91250607	91250807	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001355764, exon 1 of 11)	5' UTR (NM_001355764, exon 1 of 11)	141.0	NM_001355764	67921.0	Mm.337238	NM_026454	ENSMUSG00000034343	Ube2f	2510010F15Rik|AI851109	ubiquitin-conjugating enzyme E2F (putative)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-182955278-3	chr1	182955184	182955384	+	695.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016928, intron 1 of 3)	intron (NM_016928, intron 1 of 3)	496.0	NM_016928	53791.0	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134921610-4	chr6	134921521	134921721	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009875, intron 1 of 2)	intron (NM_009875, intron 1 of 2)	1220.0	NM_009875	12576.0	Mm.2958	NM_009875	ENSMUSG00000003031	Cdkn1b	AA408329|AI843786|Kip1|p27|p27Kip1	cyclin-dependent kinase inhibitor 1B	protein-coding	3.98587207967687	4.43059644077819	3.8904861885392	3.84997348650618	4.01682081345427	3.73490998149246	2.7820042981068	3.9316200036443	-0.495060574036756	0.319216144077167	0.821951596143819
Merged-chr6-81958229-3	chr6	81958126	81958326	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177884, exon 17 of 17)	3' UTR (NM_177884, exon 17 of 17)	7723.0	NM_026490	56284.0	Mm.276293	NM_026490	ENSMUSG00000030045	Mrpl19	9030416F12Rik|9130412E02Rik|D6Ertd157e|MRP-L15|RLX1|Rpml15	mitochondrial ribosomal protein L19	protein-coding	1.83328620127173	1.53911730197347	2.22429895638397	3.60551546780475	3.50635764026105	3.79837898474569	2.42316232634799	3.67867747361131	1.41939390855783	0.0779641539323408	0.424969781137984
Merged-chr7-30880454-2	chr7	30880384	30880584	+	850.375	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_102722)	promoter-TSS (NR_102722)	-142.0	NM_001043317	12483.0	Mm.260994	NM_009845	ENSMUSG00000030577	Cd22	A530093D23|Lyb-8|Lyb8	CD22 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-16447609-2	chr14	16447509	16447709	+	638.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289760, intron 5 of 9)	intron (NM_001289760, intron 5 of 9)	82403.0	NM_009409	21974.0	Mm.130362	NM_009409	ENSMUSG00000017485	Top2b	D230016L12Rik|Top-2	topoisomerase (DNA) II beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-32707464-3	chr16	32707333	32707533	+	874.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28453.0	NM_080457	140474.0	Mm.214599	NM_080457	ENSMUSG00000079620	Muc4	4933405I11Rik|Asgp	mucin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-96331357-4	chr10	96331270	96331470	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	105163.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-71276417-2	chr14	71276317	71276517	+	825.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25144.0	NR_046076	100043132.0	Mm.399336	NR_046075	ENSMUSG00000115139	Gm4251	-	predicted gene 4251	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-24898055-4	chr4	24897988	24898188	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026742)	promoter-TSS (NM_026742)	5.0	NM_026742	68493.0	Mm.204831	NM_026742	ENSMUSG00000028261	Ndufaf4	1110007M04Rik|3000003G13Rik|AW214064	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-54180018-4	chr6	54179905	54180105	+	878.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163640, intron 2 of 12)	intron (NM_001163640, intron 2 of 12)	-84853.0	NM_001311133	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-31951653-2	chr12	31951552	31951752	+	936.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1407.0	NM_001361928	73389.0	Mm.390461	NM_153198	ENSMUSG00000002996	Hbp1	1700058O05Rik|BE629963|C330012F01Rik|C86454	high mobility group box transcription factor 1	protein-coding	3.17883023517207	3.04386853388338	2.03344017602966	1.32188810397471	1.71500881267606	2.43942666857062	2.6992345537899	2.27887308042571	-0.576308862988293	0.532146140968752	0.95170765169578
Merged-chr16-21690573-2	chr16	21690473	21690673	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001881, intron 1 of 1)	intron (NM_001001881, intron 1 of 1)	4092.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-17690517-4	chr12	17690563	17690763	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361645)	promoter-TSS (NM_001361645)	-146.0	NM_001361645	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-85003669-4	chr11	85003559	85003759	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029934, intron 29 of 33)	intron (NM_001029934, intron 29 of 33)	45905.0	NM_007607	12351.0	Mm.1641	NM_007607	ENSMUSG00000000805	Car4	AW456718|Ca4	carbonic anhydrase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-53684148-4	chr17	53684014	53684214	+	830.258301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028232, intron 4 of 8)	intron (NM_028232, intron 4 of 8)	5201.0	NM_028232	72415.0	Mm.153202	NM_028232	ENSMUSG00000023940	Sgo1	3300001M08Rik|C81037|Sgol1	shugoshin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-36789035-2	chr17	36788944	36789144	+	757.416626	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR41|LTR|ERVL	16134.0	NM_177637	224761.0	Mm.246584	NM_177637	ENSMUSG00000037246	H2-M10.5	6.9H	histocompatibility 2, M region locus 10.5	protein-coding	1.75052111705755	2.08834838658956	1.12316382314956	1.54696454355131	1.05749479203476	1.67226124864568	1.13069638667025	0.889715998622043	-1.61018573425221	0.195632933674559	0.676687662375754
Merged-chr17-65872778-2	chr17	65872678	65872878	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009067, intron 1 of 9)	intron (NM_009067, intron 1 of 9)	12145.0	NM_001198949	19765.0	Mm.17009	NM_009067	ENSMUSG00000024096	Ralbp1	RLIP76|Rip1	ralA binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-39926863-2	chr10	39926763	39926963	+	770.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163503)	promoter-TSS (NM_001163503)	60.0	NM_001163503	72045.0	Mm.235981	NM_001163503	ENSMUSG00000039339	Mfsd4b2	2010001E11Rik|Naglt1b	major facilitator superfamily domain containing 4B2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-65886313-5	chr17	65886164	65886364	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009067)	promoter-TSS (NM_009067)	-509.0	NM_009067	19765.0	Mm.17009	NM_009067	ENSMUSG00000024096	Ralbp1	RLIP76|Rip1	ralA binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-13558045-2	chr9	13557946	13558146	+	584.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61943.0	NM_001013813	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-75072854-2	chr8	75072754	75072954	+	572.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20764.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91044547-4	chr16	91044434	91044634	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026110)	promoter-TSS (NM_026110)	-155.0	NR_152264	67367.0	Mm.347	NM_026110	ENSMUSG00000022974	Paxbp1	1810007M14Rik|C21orf66|Gcfc|Gcfc1|Pax3/7bp	PAX3 and PAX7 binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-70753700-2	chr7	70753600	70753800	+	766.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-386954.0	NM_183261	11819.0	Mm.158143	NM_009697	ENSMUSG00000030551	Nr2f2	2700033K02Rik|9430015G03Rik|ARP-1|Aporp1|COUP-TF2|COUP-TFII|COUPTFB|EAR3|SVP40|Tcfcoup2	nuclear receptor subfamily 2, group F, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-78797363-4	chr17	78797231	78797431	+	861.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081179, intron 21 of 35)	intron (NM_001081179, intron 21 of 35)	38050.0	NM_001081179	320473.0	Mm.46309	NM_028084	ENSMUSG00000039414	Heatr5b	2010013B10Rik|A230048G03Rik|AV071430|D330050P16Rik|mKIAA1414	HEAT repeat containing 5B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-88595043-2	chr5	88594943	88595143	+	764.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359208, intron 2 of 13)	intron (NM_001359208, intron 2 of 13)	11530.0	NM_001359209	52822.0	Mm.270469	NM_027530	ENSMUSG00000029291	Rufy3	2810428M05Rik|6330416M07Rik|AW455998|AW538594|D5Bwg0860e|Ripx|Rpipx	RUN and FYVE domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141130218-2	chr4	141130118	141130318	+	776.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001277195, intron 1 of 3)	(TTTA)n|Simple_repeat|Simple_repeat	9578.0	NR_102344	213491.0	Mm.332006	NM_174996	ENSMUSG00000040842	Szrd1	1110022I03|D4Ertd22e	SUZ RNA binding domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-116141918-1	chr12	116141818	116142018	+	572.0	f1_c57bl6.idr	intron (NM_009511, intron 10 of 12)	intron (NM_009511, intron 10 of 12)	64192.0	NM_009511	22355.0	Mm.395245	NM_009511	ENSMUSG00000011171	Vipr2	VPAC2|VPAC2R|Vip2	vasoactive intestinal peptide receptor 2	protein-coding	0.426823875586477	0.298368954508604	0.290956146840722	0.603798928643741	0.563464512932672	0.300034865771117	1.18251131310583	0.736198384404998	2.12298782719465	0.238741887557252	1
Merged-chr11-87448286-4	chr11	87448206	87448406	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199293, intron 2 of 30)	CpG	20715.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-53300572-4	chr11	53300486	53300686	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008300)	promoter-TSS (NM_008300)	-107.0	NM_008300	15525.0	Mm.239865	NM_008300	ENSMUSG00000020361	Hspa4	70kDa|AI317151|APG-2|Hsp110|Hsp70RY|mKIAA4025	heat shock protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105958378-2	chr8	105958278	105958478	+	625.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045594, intron 3 of 23)	intron (NR_045594, intron 3 of 23)	-6679.0	NR_106042	102465651.0		NR_106042	ENSMUSG00000099131	Mir7074	Gm27603|mmu-mir-7074	microRNA 7074	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-40640048-4	chr19	40639958	40640158	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304721, intron 1 of 9)	intron (NM_001304721, intron 1 of 9)	-19712.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	2.89435520386493	1.9258406168551	3.84170716488169	2.37552538111156	3.21083867943312	2.70870253366229	3.1643144865349	2.88132689881762	0.0492839489297218	0.946694829239879	0.998431161219273
Merged-chr9-118625786-2	chr9	118625686	118625886	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 1 of 27)	intron (NM_133721, intron 1 of 27)	19077.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-78509349-2	chr11	78509249	78509449	+	886.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_199199, intron 3 of 5)	B2_Mm2|SINE|B2	2819.0	NM_199199	195040.0	Mm.383431	NM_199199	ENSMUSG00000051232	Tmem199	AI316787|AI848469|R74819	transmembrane protein 199	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-40144407-3	chr15	40144305	40144505	+	791.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001256056, intron 2 of 3)	intron (NM_001256056, intron 2 of 3)	10040.0	NM_001256056	328531.0	Mm.60703	NM_001256056	ENSMUSG00000094112	9330182O14Rik	-	RIKEN cDNA 9330182O14 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-64100666-4	chr9	64100566	64100766	+	886.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16481.0	NM_145835	235435.0	Mm.436581	NM_145835	ENSMUSG00000032401	Lctl	E130104I05Rik|KLPH	lactase-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-52097202-4	chr11	52097101	52097301	+	951.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1623.0	NM_019411	19052.0	Mm.260288	NM_019411	ENSMUSG00000020349	Ppp2ca	PP2A|R75353	protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-77238804-4	chr12	77238731	77238931	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045554)	promoter-TSS (NR_045554)	92.0	NR_045554	53618.0	Mm.35628	NM_016893	ENSMUSG00000021065	Fut8	-	fucosyltransferase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27676927-4	chr2	27676823	27677023	+	974.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011305)	promoter-TSS (NM_011305)	-278.0	NM_011305	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129503015-2	chr4	129502914	129503114	+	903.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10567.0	NM_010807	17357.0	Mm.424974	NM_010807	ENSMUSG00000047945	Marcksl1	AL022768|AW215397|AW536807|D4Bc1|F52|MacMARCKS|Macs2|Macs3|Mlp|Mrp	MARCKS-like 1	protein-coding	-1.09275713801584	-1.07137394485192	-0.908118492192355	-1.08944348393146	-1.09226475929859	-1.0689147209651	-1.08015323825198	-0.546193876133101	1.70350292213763	0.597391873441718	1
Merged-chr7-28803454-3	chr7	28803338	28803538	+	858.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-7452.0	NM_177301	15388.0	Mm.9043	NM_177301	ENSMUSG00000015165	Hnrnpl	C79783|D830027H13Rik|Hnrpl	heterogeneous nuclear ribonucleoprotein L	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71613644-4	chr8	71613554	71613754	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146211, intron 3 of 11)	intron (NM_146211, intron 3 of 11)	2630.0	NM_146211	234407.0	Mm.240885	NM_146211	ENSMUSG00000034807	Colgalt1	2810024B22Rik|Glt25d1	collagen beta(1-O)galactosyltransferase 1	protein-coding	4.75808523718317	4.00346325260436	4.23434854025707	5.38525962201408	4.92000321717467	4.53705225745141	4.92407097579546	5.35766443413208	0.310563372596034	0.431572955432261	0.904679012727573
Merged-chr4-126261603-2	chr4	126261503	126261703	+	999.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013718)	promoter-TSS (NM_013718)	-802.0	NM_013718	27096.0	Mm.8392	NM_013718	ENSMUSG00000028847	Trappc3	1110058K12Rik|AI835942|AU019197|Bet3	trafficking protein particle complex 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-165682642-4	chr1	165682551	165682751	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038846, intron 1 of 5)	intron (NM_001038846, intron 1 of 5)	25443.0	NM_001038846	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-80154165-4	chr12	80154041	80154241	+	850.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21297.0	NR_033514	69548.0	Mm.269712	NR_033514		2310015A10Rik	5330419I17Rik	RIKEN cDNA 2310015A10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-6623906-4	chr15	6623788	6623988	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155272, intron 3 of 6)	intron (NR_155272, intron 3 of 6)	30415.0	NR_155272	102632231.0	Mm.444780	NR_155272		LOC102632231	-	uncharacterized LOC102632231	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-16689572-4	chr1	16689432	16689632	+	878.104126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159711, intron 1 of 4)	B1F|SINE|Alu	1076.0	NM_001159711	17087.0	Mm.116844	NM_016923	ENSMUSG00000025779	Ly96	ESOP-1|MD-2|MD2	lymphocyte antigen 96	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-13467184-2	chr9	13467093	13467293	+	750.5	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	35832.0	NR_028271	18689.0	Mm.41972	NM_008835	ENSMUSG00000031802	Phxr4	Sp5	per-hexamer repeat gene 4	ncRNA	2.09666423525473	1.45354624091515	1.41033536052479	2.39486741717769	1.65842188529257	2.27781577514405	1.16855490969706	2.63070761833254	0.36630485998109	0.732678460052156	0.998431161219273
Merged-chr14-118090121-3	chr14	118090019	118090219	+	927.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37873.0	NM_010024	13190.0	Mm.19987	NM_010024	ENSMUSG00000022129	Dct	DT|TRP-2|TRP2|Tyrp-2|Tyrp2|slaty|slt	dopachrome tautomerase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-110592485-2	chr12	110592385	110592585	+	875.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033340, exon 1 of 1)	non-coding (NR_033340, exon 1 of 1)	1111.0	NR_033340	319786.0	Mm.129691	NR_033340		B930059L03Rik	-	RIKEN cDNA B930059L03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-109452604-2	chr3	109452504	109452704	+	588.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_020505, intron 2 of 26)	intron (NM_020505, intron 2 of 26)	111921.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-104122244-2	chr9	104122181	104122381	+	790.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175324, intron 17 of 19)	RMER1B|Other|Other	4362.0	NM_145700	252837.0	Mm.269254	NM_145700	ENSMUSG00000079355	Ackr4	A630091E18Rik|CCBP2|CCR11|CCX-CKR|CCX-CKR1|Ccrl1|Cmkbrl1|PPR1|VSHK1	atypical chemokine receptor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-86480549-6	chr6	86480469	86480669	+	978.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131125, intron 1 of 4)	intron (NR_131125, intron 1 of 4)	261.0	NR_131125	320486.0	Mm.391625	NR_131125	ENSMUSG00000085589	A430078I02Rik	T25621	RIKEN cDNA A430078I02 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-36039598-4	chr12	36039503	36039703	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025359, intron 1 of 5)	intron (NM_025359, intron 1 of 5)	2875.0	NM_025359	66109.0	Mm.254663	NM_025359	ENSMUSG00000020577	Tspan13	1100001I23Rik|NET-6|Tm4sf13	tetraspanin 13	protein-coding	4.58165630754685	4.91837673891597	5.22593869556663	4.44412563025288	5.33670696219565	5.38295746577734	5.85520380406786	4.61572417281539	0.639673428920661	0.0699494113229994	0.397717895148088
Merged-chr6-88905747-2	chr6	88905647	88905847	+	599.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011906, intron 1 of 11)	L2a|LINE|L2	3496.0	NM_011906	24100.0	Mm.284480	NM_011906	ENSMUSG00000002871	Tpra1	40kDa|Gpr175|Tpra40	transmembrane protein, adipocyte asscociated 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-26586756-4	chr11	26586645	26586845	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027260, intron 2 of 12)	intron (NM_027260, intron 2 of 12)	7175.0	NM_027260	69922.0	Mm.285351	NM_027260	ENSMUSG00000064090	Vrk2	2810003O05Rik|AI447698	vaccinia related kinase 2	protein-coding	4.87307261453726	4.81164797896249	4.83754798572932	5.41977496358904	4.9083419914207	4.18724590713442	4.74251294319478	3.84156312069654	-0.635821854968614	0.0942008701108635	0.475550312581511
Merged-chr17-25727578-4	chr17	25727504	25727704	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145409)	promoter-TSS (NM_145409)	-113.0	NM_028009	106707.0	Mm.24603	NM_028009	ENSMUSG00000041199	Rpusd1	2310051D06Rik|AU019540|Rlucl	RNA pseudouridylate synthase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-18406085-3	chr16	18405981	18406181	+	779.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_007744)	TTS (NM_007744)	7413.0	NM_001111063	12846.0	Mm.100940	NM_007744	ENSMUSG00000000326	Comt	Comt1|D16Wsu103e|D330014B15Rik	catechol-O-methyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-81782147-2	chr12	81782047	81782247	+	621.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177395)	promoter-TSS (NM_177395)	-977.0	NM_001174107	338372.0	Mm.35284	NM_177395	ENSMUSG00000042724	Map3k9	E130314H24Rik|Mlk1|Prke1	mitogen-activated protein kinase kinase kinase 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-75551311-1	chr10	75551211	75551411	+	678.0	f0_balb.idr	3' UTR (NM_198860, exon 4 of 4)	3' UTR (NM_198860, exon 4 of 4)	9019.0	NM_198860	192734.0	Mm.259320	NM_198860	ENSMUSG00000046807	Lrrc75b	AI646023|Fam211b	leucine rich repeat containing 75B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-170401634-4	chr2	170401544	170401744	+	826.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029815, intron 4 of 12)	intron (NM_029815, intron 4 of 12)	26201.0	NM_001164369	76960.0	Mm.240850	NM_029815	ENSMUSG00000013523	Bcas1	2210416M21Rik|9030223A09Rik|AI841227|NABC1	breast carcinoma amplified sequence 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-56326284-2	chr8	56326184	56326384	+	736.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31732.0	NM_008278	15446.0	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	2.23475711178198	0.929398623154075	1.7766917588907	0.89351811157923	1.24430084604508	1.5786091367088	2.18484668648768	0.896310656621076	-0.0801739013910547	0.95232428317753	0.998431161219273
Merged-chr9-16312245-4	chr9	16312172	16312372	+	856.44165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080814, intron 1 of 24)	intron (NM_001080814, intron 1 of 24)	65959.0	NM_001080814	270120.0	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT atypical cadherin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125334584-4	chr6	125334483	125334683	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011324, intron 3 of 11)	L1MB7|LINE|L1	13243.0	NM_011324	20276.0	Mm.144114	NM_011324	ENSMUSG00000030340	Scnn1a	ENaC|SCNEA|Scnn1|mENaC	sodium channel, nonvoltage-gated 1 alpha	protein-coding	4.30345816005475	4.49590114517891	3.87188909084538	3.1151043593466	4.02022607973589	4.80082699355527	4.16812565967005	3.35361717463032	0.181565479385305	0.720241303873122	0.998431161219273
Merged-chr6-83268380-4	chr6	83268277	83268477	+	993.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001166067, exon 10 of 25)	exon (NM_001166067, exon 10 of 25)	31002.0	NM_001166067	232156.0	Mm.333189	NM_001166067	ENSMUSG00000068323	Slc4a5	C330006M16|C330016K18Rik	solute carrier family 4, sodium bicarbonate cotransporter, member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5528590-2	chr19	5528490	5528690	+	954.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18073.0	NM_001024560	225861.0	Mm.20071	NM_001024560	ENSMUSG00000056185	Snx32	B930037P14Rik|Snx6b	sorting nexin 32	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-43623636-3	chr6	43623535	43623735	+	955.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013861, intron 2 of 8)	Lx7|LINE|L1	42643.0	NM_013861	29807.0	Mm.320979	NM_013861	ENSMUSG00000029735	Tpk1	-	thiamine pyrophosphokinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-148114931-4	chr4	148114815	148115015	+	899.68335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027426, intron 2 of 6)	intron (NM_027426, intron 2 of 6)	15783.0	NM_027426	70433.0	Mm.275288	NM_027426	ENSMUSG00000029005	Draxin	2610109H07Rik|neucrin	dorsal inhibitory axon guidance protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30997620-2	chr7	30997520	30997720	+	652.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15699.0	NM_001242647	76415.0	Mm.259739	NM_175240	ENSMUSG00000046826	Fam187b	1700020B09Rik|Tmem162	family with sequence similarity 187, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-121352770-2	chr11	121352670	121352870	+	727.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025793, intron 1 of 9)	intron (NM_025793, intron 1 of 9)	1677.0	NM_025793	66840.0	Mm.103986	NM_025793	ENSMUSG00000025173	Wdr45b	0610008N23Rik|AA408735|D16Bwg0193e|WIPI-3|Wdr45l	WD repeat domain 45B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-40448187-3	chr10	40448084	40448284	+	760.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291817, intron 4 of 11)	intron (NM_001291817, intron 4 of 11)	98876.0	NM_001291816	78334.0	Mm.200924	NM_198164	ENSMUSG00000038481	Cdk19	2700084L06Rik|AI845279|AW228747|CDK11|Cdc2l6|mKIAA1028	cyclin-dependent kinase 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-64059899-4	chr15	64059795	64059995	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360038)	promoter-TSS (NM_001360038)	-131.0	NM_001360038	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-19122420-4	chr10	19122299	19122499	+	967.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19350.0	NR_038021	100504265.0	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	3.88259960152761	3.45600862433675	4.62089992224781	4.2241537829417	3.49913475225406	2.81890263320525	3.99344091128916	2.61838814235855	-1.09733577787308	0.0493787004748172	0.323622896010665
Merged-chr13-23571272-4	chr13	23571170	23571370	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178187)	promoter-TSS (NM_178187)	-50.0	NM_178187	319166.0	Mm.261665	NM_178187	ENSMUSG00000069272	Hist1h2ae	1190022L06	histone cluster 1, H2ae	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-148167128-2	chr4	148167028	148167228	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_176848)	TTS (NM_176848)	6460.0	NM_176848	230904.0	Mm.262287	NM_176848	ENSMUSG00000041556	Fbxo2	FBG1|FBX2|Fbs1|Fbs2|NFB42|Prpl4	F-box protein 2	protein-coding	-0.680810270979964	-0.826112929075494	-0.830929440789095	-0.833797598448495	-0.837866926465875	-0.823066979179801	0.00228296503704961	-0.833295853670773	2.43779967960921	0.40321424150816	1
Merged-chr17-28909561-3	chr17	28909474	28909674	+	851.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172450, exon 2 of 12)	exon (NM_172450, exon 2 of 12)	4309.0	NR_045457	74179.0	Mm.248931	NR_045457	ENSMUSG00000085333	1700030A11Rik	-	RIKEN cDNA 1700030A11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-34864382-4	chr6	34864238	34864438	+	824.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197986, intron 1 of 1)	intron (NM_197986, intron 1 of 1)	1192.0	NM_197986	68487.0	Mm.248440	NM_197986	ENSMUSG00000057137	Tmem140	1110007F12Rik	transmembrane protein 140	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126474901-6	chr8	126474766	126474966	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001159907, exon 1 of 30)	exon (NM_001159907, exon 1 of 30)	199.0	NM_001159907	212728.0	Mm.482479	NM_001159907	ENSMUSG00000090290	Tarbp1	Gm17296|Gm179	TAR RNA binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-124020918-2	chr8	124020818	124021018	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001357315, exon 1 of 5)	5' UTR (NM_001357315, exon 1 of 5)	138.0	NM_001357315	102162.0	Mm.291777	NM_133966	ENSMUSG00000038697	Taf5l	1110005N04Rik|AI849020	TATA-box binding protein associated factor 5 like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-145328951-1	chr6	145328851	145329051	+	796.0	f1_balb.idr	Intergenic	MLT1K|LTR|ERVL-MaLR	-58674.0	NR_003625	381827.0	Mm.179075	NM_001001987		1700073E17Rik	-	ribosomal protein L7 pseudogene	pseudo	-0.0610244873216595	-0.182445893676112	-0.0198001957651868	-0.189855656141351	0.0614765599167113	0.410294372717086	-0.0153962376122593	-0.189293837830989	1.97228932876529	0.361172707467556	1
Merged-chr3-58690739-4	chr3	58690637	58690837	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009174, intron 1 of 1)	intron (NM_009174, intron 1 of 1)	1651.0	NM_009174	20439.0	Mm.2847	NM_009174	ENSMUSG00000036432	Siah2	AA415433|Sinh2	siah E3 ubiquitin protein ligase 2	protein-coding	2.55005469938392	2.14834162986146	1.93032213760472	2.25608464028444	1.47179912993987	2.16404207819594	2.71085211194912	1.72400828891834	-0.311327704160568	0.73736077804519	0.998431161219273
Merged-chr6-51524497-5	chr6	51524454	51524654	+	859.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361581, intron 1 of 6)	intron (NM_001361581, intron 1 of 6)	294.0	NM_001361580	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-96652931-2	chr9	96652829	96653029	+	880.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21426.0	NM_053268	114713.0	Mm.124502	NM_053268	ENSMUSG00000032413	Rasa2	5430433H21Rik|AA517451|AU023900|GAP1m	RAS p21 protein activator 2	protein-coding	-0.289851946104314	-0.737899168765768	-0.740932179010924	-0.743264539078787	-0.280173431323445	-0.737213951634147	-0.740264187498491	-0.742857569821679	0.0418983010157508	0.98887086484455	1
Merged-chr10-80098404-2	chr10	80098304	80098504	+	640.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359637, intron 1 of 3)	RMER4A|LTR|ERVK	2783.0	NM_001359635	216161.0	Mm.262102	NM_183426	ENSMUSG00000035673	Sbno2	BC019206|F730040C21|Sno|Stno	strawberry notch 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-86888241-4	chr12	86888132	86888332	+	997.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3418.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-81231118-2	chr13	81231018	81231218	+	950.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 85 of 89)	Lx2B2|LINE|L1	267044.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-68859809-1	chr18	68859709	68859909	+	620.5	f0_balb.idr	Intergenic	Intergenic	91719.0	NR_038051	78931.0	Mm.160155	NR_038051		4930546C10Rik	-	RIKEN cDNA 4930546C10 gene	ncRNA	0.868371770634282	0.13524012299125	0.128417355210164	0.123127861023378	0.115612909677488	0.791697045740521	0.61926948783177	0.124053580041972	0.49820868878566	0.815497024008066	1
Merged-chr17-88439772-3	chr17	88439659	88439859	+	754.633362	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355743)	promoter-TSS (NM_001355743)	-945.0	NM_001355743	14236.0	Mm.112824	NM_180974	ENSMUSG00000034998	Foxn2	3230402J05Rik|6030465J18Rik|Fkh19|Foxn1|HTLF	forkhead box N2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-116087422-2	chr9	116087301	116087501	+	654.25	f0_balb.idr|f1_c57bl6.idr	TTS (NM_009371)	TTS (NM_009371)	87962.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-19974627-2	chr14	19974527	19974727	+	805.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285908, intron 1 of 3)	intron (NM_001285908, intron 1 of 3)	2066.0	NM_001285911	14702.0	Mm.41737	NM_010315	ENSMUSG00000043004	Gng2	-	guanine nucleotide binding protein (G protein), gamma 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-99625579-2	chr12	99625479	99625679	+	630.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_045288)	TTS (NR_045288)	2395.0	NR_045288	73457.0	Mm.383439	NR_045288	ENSMUSG00000100211	1700064M15Rik	-	RIKEN cDNA 1700064M15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133199441-2	chr4	133199330	133199530	+	806.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3775.0	NR_105984	102466215.0		NR_105984	ENSMUSG00000099202	Mir7017	Gm27945|mmu-mir-7017	microRNA 7017	ncRNA	2.64561151753077	1.62804317078823	0.928945245764245	1.15131626691802	2.15321308414878	1.80080035922099	1.19320740387869	0.912874978188611	-0.478413866515144	0.704628298907135	0.998431161219273
Merged-chr1-191439868-1	chr1	191439768	191439968	+	623.0	f0_c57.idr	intron (NR_151615, intron 5 of 5)	MTD|LTR|ERVL-MaLR	25180.0	NR_151615	102634668.0		NR_151615		Gm32200	-	predicted gene, 32200	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-43682327-2	chr7	43682227	43682427	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-8091.0	NM_174866	317653.0	Mm.247377	NM_174866	ENSMUSG00000044737	Klk14	GK14	kallikrein related-peptidase 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-121947137-2	chr8	121946907	121947107	+	947.291626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2095.0	NM_007608	12352.0	Mm.116761	NM_007608	ENSMUSG00000025317	Car5a	CAV|Ca5a|Car5	carbonic anhydrase 5a, mitochondrial	protein-coding	1.92792194955278	2.15960417049114	1.47637430055623	1.62413526436162	2.29729233463068	2.29144270991862	2.1033891492683	1.63134940784108	0.784096151599407	0.416432815459902	0.897120107712695
Merged-chr14-31251375-4	chr14	31251236	31251436	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360624)	promoter-TSS (NM_001360624)	-21.0	NR_153760	71838.0	Mm.5348	NM_027949	ENSMUSG00000021902	Phf7	1700006H01Rik|1700010P14Rik|AI427892|AW555949	PHD finger protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132778369-2	chr4	132778269	132778469	+	857.75	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011284, exon 9 of 9)	3' UTR (NM_011284, exon 9 of 9)	10009.0	NM_011284	19891.0	Mm.2870	NM_011284	ENSMUSG00000028884	Rpa2	AA409079|AI325195|AU020965|RPA34|Rf-A2	replication protein A2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-12027979-4	chr15	12027887	12028087	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31980.0	NM_011294	20024.0	Mm.41746	NM_011294	ENSMUSG00000022205	Sub1	AI842364|P15|P9|Pc4|Rpo2tc1	SUB1 homolog (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71279758-2	chr8	71279658	71279858	+	660.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001142322, intron 1 of 39)	PB1D10|SINE|Alu	7044.0	NM_001142323	17925.0	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-60187153-3	chr9	60187035	60187235	+	857.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040426, intron 7 of 17)	intron (NM_001040426, intron 7 of 17)	-45915.0	NM_172444	207596.0	Mm.28791	NM_172444	ENSMUSG00000032289	Thsd4	ADAMTSL-6|ADAMTSL6|AI585901|Adamtsl4|B230114P05Rik	thrombospondin, type I, domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-78889863-3	chr8	78889765	78889965	+	931.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68713.0	NM_030145	78651.0	Mm.28694	NM_030145	ENSMUSG00000031683	Lsm6	1500031N17Rik|2410088K19Rik|AI747288	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-84827674-2	chr2	84827564	84827764	+	943.833374	f1_balb.idr|f1_c57bl6.idr	exon (NM_013899, exon 2 of 3)	exon (NM_013899, exon 2 of 3)	643.0	NM_013899	30059.0	Mm.21826	NM_013899	ENSMUSG00000027076	Timm10	Tim13|Timm13a	translocase of inner mitochondrial membrane 10	protein-coding	2.41144048133896	1.89154827692058	2.5180381329203	1.34480251304448	2.24072158067	2.90724955408789	2.53790221625969	2.23850130858698	0.854251291913931	0.340902793531691	0.841759509021393
Merged-chr3-116893112-4	chr3	116893011	116893211	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009146, intron 9 of 16)	MTD|LTR|ERVL-MaLR	31431.0	NM_009146	20321.0	Mm.66293	NM_009146	ENSMUSG00000033386	Frrs1	AI131732|Sdfr2	ferric-chelate reductase 1	protein-coding	5.86724806324301	5.67717456975896	4.44187378085334	5.76467948213376	5.36224178996199	4.90423321184127	5.46752301652786	5.7030221175022	-0.174175985940233	0.603201680033411	0.973565005745828
Merged-chr9-48414354-1	chr9	48414254	48414454	+	905.75	f0_c57.idr	Intergenic	RLTR14-int|LTR|ERV1	-39990.0	NR_026561	667933.0	Mm.491076	NR_026561		Gm8884	EG667933	predicted gene 8884	ncRNA	0.593625057228303	0.850373681462631	0.325705470138499	0.981964526104351	0.311090530824431	0.33523402233522	1.04153658867466	0.320726614887047	-0.886752684429083	0.635639625469446	1
Merged-chr11-97532623-2	chr11	97532507	97532707	+	663.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_018873, intron 11 of 19)	intron (NM_018873, intron 11 of 19)	-32267.0	NM_001289118	100141474.0	Mm.482426	NM_001289118	ENSMUSG00000047988	4933428G20Rik	-	RIKEN cDNA 4933428G20 gene	protein-coding	-0.275190369768459	-0.258471622434835	0.348243675570764	-0.268139446889919	-0.274138127600712	-0.257248216778639	-0.262713552511739	0.595924636949236	0.704231315474459	0.781957731930478	1
Merged-chr4-45533412-2	chr4	45533312	45533512	+	612.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	-2584.0	NM_001033306	230126.0	Mm.251716	NM_001033306	ENSMUSG00000044813	Shb	BC028832	src homology 2 domain-containing transforming protein B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-138194423-4	chr5	138194386	138194586	+	997.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_178612)	TTS (NM_178612)	172.0	NM_177878	330216.0	Mm.19719	NM_177878	ENSMUSG00000049285	Mblac1	-	metallo-beta-lactamase domain containing 1	protein-coding	3.41559187768597	2.90589945496753	4.39050914050339	3.18468939757179	3.44401911987582	2.58802663566098	4.1983709787058	3.54402114896101	-0.0634229714728458	0.917938253210821	0.998431161219273
Merged-chr16-45093590-2	chr16	45093539	45093739	+	649.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026439)	promoter-TSS (NM_026439)	-372.0	NM_026439	67896.0	Mm.181074	NM_026439	ENSMUSG00000022665	Ccdc80	2610001E17Rik|DRO1|Ssg1|Urb	coiled-coil domain containing 80	protein-coding	2.03026423688706	2.19370252317642	2.56365586367153	1.05446499866813	1.2446632740226	2.32274227653049	1.72618792728824	1.05832354661418	-0.97907961639128	0.39726764057526	0.883651678090835
Merged-chr9-123678708-2	chr9	123678608	123678808	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_139142, exon 1 of 11)	exon (NM_139142, exon 1 of 11)	124.0	NM_139142	102680.0	Mm.440867	NM_139142	ENSMUSG00000036814	Slc6a20a	A730081N20Rik|AU022428|Xt3s1|Xtrp3s1	solute carrier family 6 (neurotransmitter transporter), member 20A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-80473247-2	chr18	80473147	80473347	+	711.583374	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1-int|LTR|ERVL-MaLR	-3580.0	NM_026295	67655.0	Mm.312893	NM_026295	ENSMUSG00000033323	Ctdp1	4930563P03Rik|AW553592	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106127150-2	chr11	106127050	106127250	+	664.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011947, intron 6 of 15)	B2_Mm1a|SINE|B2	32777.0	NM_001356459	67803.0	Mm.21687	NM_172397	ENSMUSG00000040699	Limd2	0610025L06Rik|AI413966	LIM domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-97764767-3	chr7	97764672	97764872	+	617.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23769.0	NM_001357365	18479.0	Mm.260227	NM_011035	ENSMUSG00000030774	Pak1	AW045634|PAK-1|Paka	p21 (RAC1) activated kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34264166-4	chr17	34264083	34264283	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207105, intron 1 of 5)	intron (NM_207105, intron 1 of 5)	956.0	NM_207105	14961.0	Mm.254067	NM_207105	ENSMUSG00000073421	H2-Ab1	AI845868|Abeta|H-2Ab|H2-Ab|I-Abeta|IAb|Ia-2|Ia2|Rmcs1	histocompatibility 2, class II antigen A, beta 1	protein-coding	6.31673572884102	6.50203377389027	5.9516389440989	6.01638977757715	6.52262719333973	6.76917933441927	6.3709350576497	6.29908454885799	0.309753757855144	0.15522097642086	0.610603696753271
Merged-chr14-120289707-2	chr14	120289607	120289807	+	711.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360380, intron 1 of 7)	intron (NM_001360380, intron 1 of 7)	14038.0	NM_001360380	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-134934159-1	chr4	134934059	134934259	+	549.0	f1_c57bl6.idr	intron (NM_026780, intron 2 of 6)	intron (NM_026780, intron 2 of 6)	3179.0	NM_026780	68592.0	Mm.29989	NM_026780	ENSMUSG00000028821	Syf2	1110018L13Rik|Cbpin|D4Bwg1551e|Gcipip|Ntc31|mp29|p29	SYF2 homolog, RNA splicing factor (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-6366496-4	chr4	6366392	6366592	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001098227, intron 1 of 8)	intron (NM_001098227, intron 1 of 8)	812.0	NM_001098227	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-29960382-4	chr14	29960275	29960475	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A1-int|LTR|ERVL-MaLR	-8005.0	NM_019979	80795.0	Mm.104491	NM_019979	ENSMUSG00000042682	Selenok	1110001C03Rik|AA673253|HSPC030|Hsp30|Selk	selenoprotein K	protein-coding	4.49651434022919	5.49072777874385	5.6082146647386	5.035475375688	4.53129371690515	3.57357835837791	3.32004118425222	4.0195660762953	-1.55942049574213	0.000232979074951472	0.00608552164281806
Merged-chr9-37029982-1	chr9	37029882	37030082	+	790.0	f0_balb.idr	intron (NM_001029838, intron 2 of 12)	intron (NM_001029838, intron 2 of 12)	117340.0	NM_148950	208076.0	Mm.260335	NM_148950	ENSMUSG00000035934	Pknox2	D230005H23Rik|Prep2	Pbx/knotted 1 homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-19971467-2	chr14	19971367	19971567	+	645.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285908, intron 1 of 3)	intron (NM_001285908, intron 1 of 3)	5226.0	NM_001285911	14702.0	Mm.41737	NM_010315	ENSMUSG00000043004	Gng2	-	guanine nucleotide binding protein (G protein), gamma 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-90204141-2	chr7	90204041	90204241	+	610.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360867, intron 19 of 19)	intron (NM_001360867, intron 19 of 19)	61291.0	NM_029256	75338.0	Mm.487222	NM_029256	ENSMUSG00000030617	Ccdc83	4930549K11Rik|4930554C01Rik|4932423M01Rik	coiled-coil domain containing 83	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3697426-3	chr4	3697422	3697622	+	703.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 1 of 12)	(TCTCCC)n|Simple_repeat|Simple_repeat	-17442.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44996858-1	chr7	44996758	44996958	+	625.0	f1_balb.idr	promoter-TSS (NM_016849)	promoter-TSS (NM_016849)	721.0	NM_029410	75736.0	Mm.261006	NM_029410	ENSMUSG00000003190	Bcl2l12	2810475P17Rik|5430429M05Rik|Bcl-L12|Bcl2-L12	BCL2-like 12 (proline rich)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-72946155-3	chr11	72946059	72946259	+	837.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15010.0	NM_016745	53313.0	Mm.6306	NM_016745	ENSMUSG00000020788	Atp2a3	SERCA3b|Serca3	ATPase, Ca++ transporting, ubiquitous	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85483304-4	chr12	85483196	85483396	+	945.508301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9406.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-33822813-2	chr2	33822713	33822913	+	591.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175184, intron 6 of 9)	intron (NM_175184, intron 6 of 9)	16997.0	NR_045729	320482.0	Mm.442057	NR_045729	ENSMUSG00000086484	Nron	A630071L07Rik|Gm24353	non-protein coding RNA, repressor of NFAT	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-125600211-4	chr8	125600112	125600312	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015535, intron 2 of 2)	ORR1E|LTR|ERVL-MaLR	15574.0	NR_015535	75930.0	Mm.195663	NR_015535	ENSMUSG00000110629	4930567H12Rik	4930579P07Rik	RIKEN cDNA 4930567H12 gene	ncRNA	5.82831345462371	6.17267716872399	5.23570309320296	5.79859448340872	4.93906150640199	4.84560346595463	4.58477618344145	5.34528466603853	-0.958468736287455	0.00184893123995522	0.0315704132120247
Merged-chr1-136675567-3	chr1	136675460	136675660	+	955.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-7836.0	NR_045324	100503460.0	Mm.30630	NR_045324	ENSMUSG00000097113	Gm19705	-	predicted gene, 19705	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-61351047-4	chr1	61350961	61351161	+	895.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27371.0	NR_040483	77341.0	Mm.402964	NR_040483	ENSMUSG00000085447	9530026F06Rik	-	RIKEN cDNA 9530026F06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-106193169-1	chr9	106193069	106193269	+	569.0	f0_balb.idr	Intergenic	Intergenic	5770.0	NM_198931	67905.0	Mm.23018	NM_026447	ENSMUSG00000020253	Ppm1m	2810423O19Rik|AW610647|C77250|PP2Ceta	protein phosphatase 1M	protein-coding	1.67871583943353	1.9102734919885	3.25827936555278	1.93940814007586	1.69445306010294	1.184367030631	2.92915162450925	1.38553891394367	-0.764659785269197	0.463767739923078	0.922064436622467
Merged-chr2-143977971-2	chr2	143977871	143978071	+	820.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_024281, intron 2 of 23)	intron (NM_024281, intron 2 of 23)	33292.0	NM_133626	81910.0	Mm.13705	NM_024281	ENSMUSG00000027422	Rrbp1	1700087N07Rik|5730465C04Rik|ES/130|mKIAA1398|mRRp0|mRRp1.8|mRRp10|mRRp15a|mRRp15b|mRRp16.8|mRRp2|mRRp41|mRRp47|mRRp5.4|p180	ribosome binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-111146571-2	chr8	111146471	111146671	+	925.1666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-1073.0	NR_040364	434350.0	Mm.442061	NR_040363		9430091E24Rik	-	RIKEN cDNA 9430091E24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-125513635-4	chr8	125513599	125513799	+	899.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357372, intron 2 of 21)	intron (NM_001357372, intron 2 of 21)	-20866.0	NM_001081337	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	-1.17367364971587	-1.14665061133654	-1.15856004380685	-1.16834280623128	-1.17310571790619	-1.14406978763884	-0.42938571406771	-1.16659169643457	2.89727187181404	0.396361616615464	1
Merged-chr11-29846753-3	chr11	29846664	29846864	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146016, intron 10 of 41)	Lx2|LINE|L1	-21096.0	NM_176829	216622.0	Mm.443260	NM_176829	ENSMUSG00000078157	4931440F15Rik	Fem1ab	RIKEN cDNA 4931440F15 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-123632324-4	chr4	123632215	123632415	+	961.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199137, intron 1 of 92)	intron (NM_001199137, intron 1 of 92)	15895.0	NR_105824	102465214.0		NR_105824	ENSMUSG00000099005	Mir6398	Gm27657|mmu-mir-6398	microRNA 6398	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-54911488-3	chr1	54911465	54911665	+	677.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081433, intron 1 of 27)	intron (NM_001081433, intron 1 of 27)	14822.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-29857595-1	chr13	29857495	29857695	+	556.0	f0_balb.idr	Intergenic	Intergenic	-1922.0	NM_144536	68916.0	Mm.212227	NM_144536	ENSMUSG00000006191	Cdkal1	1190005B03Rik|6620401C13Rik	CDK5 regulatory subunit associated protein 1-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-115733356-4	chr9	115733278	115733478	+	885.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16_Mm|LTR|ERVK	-176077.0	NM_028638	73748.0	Mm.485018	NM_028638	ENSMUSG00000056880	Gadl1	1110027M19Rik|ADC|CSADC	glutamate decarboxylase-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-44030004-2	chr4	44029904	44030104	+	650.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080384, intron 5 of 5)	intron (NM_001080384, intron 5 of 5)	17354.0	NM_001290470	12757.0	Mm.298875	NM_016760	ENSMUSG00000028478	Clta	AV026556|Lca	clathrin, light polypeptide (Lca)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-59561945-4	chr11	59561836	59562036	+	869.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153314, intron 7 of 9)	intron (NR_153314, intron 7 of 9)	9802.0	NM_001011789	257962.0	Mm.377316	NM_001011789	ENSMUSG00000059610	Olfr222	MOR256-45P	olfactory receptor 222	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-27397772-4	chr7	27397667	27397867	+	889.7666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_032610, intron 18 of 35)	intron (NM_032610, intron 18 of 35)	-1214.0	NM_001199236	80297.0	Mm.459123	NM_032610	ENSMUSG00000011751	Sptbn4	1700022P15Rik|5830426A08Rik|ROSA62|SpbIV|Spnb4|dyn|lnd|nmf261|nmf379|qv	spectrin beta, non-erythrocytic 4	protein-coding	1.71059066045365	1.91215459176448	2.74623945691802	2.36449835316205	1.3980439746549	2.07967932673925	1.86326977223804	1.80763654737589	-1.17128832110911	0.222159848174288	0.713583934962101
Merged-chr14-79451821-4	chr14	79451718	79451918	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001034882)	promoter-TSS (NM_001034882)	-17.0	NM_001034882	432879.0	Mm.308666	NM_001034882	ENSMUSG00000075502	Kbtbd6	EG432879|Gm5465|Zbtbd6	kelch repeat and BTB (POZ) domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-95051636-4	chr4	95051521	95051721	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010591, exon 1 of 1)	5' UTR (NM_010591, exon 1 of 1)	601.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	5.58785002824568	5.44447671723323	4.97587468052269	4.59313798359273	5.28834634517973	5.41459119408972	4.49225277982039	4.51795500626405	-0.251898712473709	0.48638756212119	0.932503166794264
Merged-chr2-101881982-4	chr2	101881875	101882075	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355625, intron 1 of 8)	intron (NM_001355625, intron 1 of 8)	1052.0	NM_001355625	72446.0	Mm.24138	NM_175181	ENSMUSG00000032841	Prr5l	2600010E01Rik|4833411O04Rik|Protor-2|Protor2	proline rich 5 like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-17657769-4	chr12	17657728	17657928	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-32981.0	NM_001361645	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-84194471-1	chr17	84194371	84194571	+	660.0	f0_balb.idr	intron (NM_183021, intron 36 of 37)	intron (NM_183021, intron 36 of 37)	-6524.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84666225-2	chr8	84666125	84666325	+	803.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3373.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	-2.05752322593321	-2.15521190974092	-2.16307242109104	-2.16952927915413	-2.17938029103484	-2.15350850414045	-2.16129297361887	-2.16837350464794	-0.683654500252594	0.846597994014493	1
Merged-chr17-31103194-1	chr17	31103094	31103294	+	576.0	f1_balb.idr	intron (NM_009593, intron 5 of 14)	intron (NM_009593, intron 5 of 14)	26417.0	NM_011575	21786.0	Mm.4641	NM_011575	ENSMUSG00000024029	Tff3	ITF|mITF	trefoil factor 3, intestinal	protein-coding	0.52617295469615	0.551327487844508	1.11841509983609	0.703679298494513	1.19045968571442	0.917340703485128	0.881455581660916	0.85037292745431	1.175123798483	0.451490877537971	1
Merged-chr7-113369361-4	chr7	113369260	113369460	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133700)	promoter-TSS (NM_133700)	-21.0	NM_133700	68815.0	Mm.238034	NM_133700	ENSMUSG00000038187	Btbd10	1110056N09Rik|Gmrp1	BTB (POZ) domain containing 10	protein-coding	6.23480607851872	6.71331672323525	6.48539926118316	6.34614265052045	6.20577665518013	6.37502362346337	5.58169857096733	6.35615346389208	-0.310737621417327	0.178965318179692	0.649697107310641
Merged-chr7-25271357-2	chr7	25271257	25271457	+	886.599976	f1_balb.idr|f1_c57bl6.idr	exon (NM_001302811, exon 2 of 21)	exon (NM_001302811, exon 2 of 21)	3658.0	NM_001302811	71722.0	Mm.28833	NM_027882	ENSMUSG00000005442	Cic	1200010B10Rik|mKIAA0306	capicua transcriptional repressor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-31808181-3	chr13	31808078	31808278	+	672.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008592, exon 1 of 1)	exon (NM_008592, exon 1 of 1)	1532.0	NM_008592	17300.0	Mm.12949	NM_008592	ENSMUSG00000050295	Foxc1	FREAC3|Fkh1|Mf1|Mf4|ch|fkh-1|frkhda	forkhead box C1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135934678-4	chr5	135934571	135934771	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018871)	promoter-TSS (NM_018871)	-30.0	NM_018871	22628.0	Mm.233813	NM_018871	ENSMUSG00000051391	Ywhag	14-3-3gamma|D7Bwg1348e	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101008791-4	chr11	101008685	101008885	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001243051)	promoter-TSS (NM_001243051)	-667.0	NM_016920	11975.0	Mm.340818	NM_016920	ENSMUSG00000019302	Atp6v0a1	AA959968|ATP6a1|Atp6n1|Atp6n1a|Atpv0a1|Vpp-1|Vpp1	ATPase, H+ transporting, lysosomal V0 subunit A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-100183793-1	chr3	100183693	100183893	+	593.0	f1_balb.idr	intron (NR_104341, intron 6 of 13)	B2_Mm1t|SINE|B2	21330.0	NR_104341	14547.0	Mm.279228	NM_010269	ENSMUSG00000027865	Gdap2	C77050|D3Ertd801e	ganglioside-induced differentiation-associated-protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127266819-3	chr10	127266738	127266938	+	897.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027151, intron 1 of 13)	CpG	576.0	NM_001190453	69654.0	Mm.167537	NM_027151	ENSMUSG00000025410	Dctn2	2310042E05Rik|C130077D06Rik|C87049|DCTN-50|GMP23-48K|RBP50|p50	dynactin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-69904768-2	chr8	69904700	69904900	+	849.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2242.0	NM_023312	67184.0	Mm.21162	NM_023312	ENSMUSG00000036199	Ndufa13	2700054G14Rik|AU022060|CDA016|CGI-39|GRIM-19|Grim19	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 13	protein-coding	1.4345193119367	1.66044990097445	0.680279833488503	0.669108925043284	0.652981812165637	0.697644330878051	1.37971024892338	1.6357453587732	-0.0902775684032318	0.95474059239568	0.998431161219273
Merged-chr14-55578472-4	chr14	55578378	55578578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011189)	promoter-TSS (NM_011189)	-16.0	NM_011189	19186.0	Mm.830	NM_011189	ENSMUSG00000022216	Psme1	AW413925|PA28a	proteasome (prosome, macropain) activator subunit 1 (PA28 alpha)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-172452744-2	chr2	172452644	172452844	+	661.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039560, intron 3 of 3)	intron (NM_001039560, intron 3 of 3)	5852.0	NM_001039560	654821.0	Mm.389337	NM_001039560	ENSMUSG00000074569	Gcnt7	A330041C17Rik|gnt	glucosaminyl (N-acetyl) transferase family member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-45664183-1	chr19	45664083	45664283	+	782.0	f0_balb.idr	Intergenic	Intergenic	-3990.0	NM_013907	30838.0	Mm.254739	NM_013907	ENSMUSG00000040913	Fbxw4	Dac|Fbw4|SHFM3|SHSF3|dactylin|dactylyn	F-box and WD-40 domain protein 4	protein-coding	-0.113482791599878	-0.098946513013919	0.450533016403827	-0.107392798957677	0.259998835672601	-0.0978698036818422	-0.102666102924964	0.418796606676938	0.61518337482308	0.792460610467234	1
Merged-chr19-34067238-1	chr19	34067138	34067338	+	544.0	f0_balb.idr	promoter-TSS (NM_027340)	promoter-TSS (NM_027340)	-120.0	NM_027340	70166.0	Mm.75602	NM_027340	ENSMUSG00000024770	Lipn	2210418G03Rik|Lipl4	lipase, family member N	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55747461-6	chr19	55747316	55747516	+	679.388916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_138565, intron 3 of 15)	intron (NR_138565, intron 3 of 15)	5606.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	-0.152391458948978	0.0218223342594801	0.00363718025230362	-0.0103792084230022	0.171515798731178	-0.141548166050711	0.138125348613501	-0.00793126179976988	0.855890703756786	0.673567169157639	1
Merged-chr1-191181524-5	chr1	191181419	191181619	+	937.31665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007498, intron 1 of 3)	intron (NM_007498, intron 1 of 3)	1814.0	NM_007498	11910.0	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-39708690-2	chr2	39708590	39708790	+	650.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1VL4|LINE|L1	-482341.0	NM_024209	67857.0	Mm.389242	NM_024209	ENSMUSG00000026753	Ppp6c	2310003C10Rik|Pp6C	protein phosphatase 6, catalytic subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-109364470-2	chr11	109364370	109364570	+	773.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_038097)	promoter-TSS (NR_038097)	-816.0	NR_038097	100036768.0	Mm.467767	NR_038097	ENSMUSG00000056687	Gm11696	-	predicted gene 11696	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-110018447-4	chr2	110018350	110018550	+	923.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149736, intron 1 of 6)	intron (NR_149736, intron 1 of 6)	633.0	NR_149736	68201.0	Mm.181767	NM_026613	ENSMUSG00000027160	Ccdc34	2810027O19Rik|4930522P10Rik|AI596202	coiled-coil domain containing 34	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-148443091-2	chr6	148442991	148443191	+	814.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_198967, intron 1 of 19)	intron (NM_198967, intron 1 of 19)	1261.0	NM_198967	387314.0	Mm.137858	NM_198967	ENSMUSG00000030306	Tmtc1	Arg99|BC023818	transmembrane and tetratricopeptide repeat containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-77880557-3	chr10	77880453	77880653	+	837.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001287074, intron 9 of 11)	intron (NM_001287074, intron 9 of 11)	-12867.0	NR_015547	75188.0	Mm.348012	NM_029200	ENSMUSG00000096573	1700009J07Rik	4930535B06Rik	RIKEN cDNA 1700009J07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-33249050-4	chr6	33248951	33249151	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009148)	promoter-TSS (NM_009148)	-77.0	NM_009148	20336.0	Mm.265512	NM_009148	ENSMUSG00000029763	Exoc4	C78892|Sec8|Sec8l1	exocyst complex component 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-38470620-4	chr15	38470525	38470725	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	19922.0	NR_105916	102465574.0		NR_105916	ENSMUSG00000099110	Mir6951	Gm27765|mmu-mir-6951	microRNA 6951	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35381974-2	chr17	35381874	35382074	+	823.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001143689, intron 3 of 5)	intron (NM_001143689, intron 3 of 5)	2357.0	NM_001143689	15015.0	Mm.464284	NM_001143689	ENSMUSG00000035929	H2-Q4	H-2Q4|H2-Gs10|Qa-4|Qa4|Qat-4|Qb-1|Qb1	histocompatibility 2, Q region locus 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-77805672-4	chr18	77805582	77805782	+	965.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013831, intron 1 of 14)	Tigger7|DNA|TcMar-Tigger	-9292.0	NR_152167	619308.0	Mm.490456	NM_001033812		F830208F22Rik	-	RIKEN cDNA F830208F22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19634890-2	chr7	19634790	19634990	+	664.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_019649, exon 12 of 14)	exon (NM_019649, exon 12 of 14)	-5452.0	NM_009046	19698.0	Mm.1741	NM_009046	ENSMUSG00000002983	Relb	shep	avian reticuloendotheliosis viral (v-rel) oncogene related B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-55666411-4	chr1	55666291	55666491	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114663, intron 1 of 5)	intron (NM_001114663, intron 1 of 5)	260445.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	5.20366569327872	5.9847489755297	5.63005316739781	6.82257461068405	4.80953476336779	5.09459582953678	4.89299803038464	5.13896587190962	-1.19616792679561	0.000520658208957976	0.0115539898725237
Merged-chr12-104835028-2	chr12	104834928	104835128	+	981.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001040682, intron 1 of 12)	intron (NM_001040682, intron 1 of 12)	30048.0	NR_104436	94040.0	Mm.244078	NM_053155	ENSMUSG00000021097	Clmn	9330188N17Rik|AI428889|AI788815|mKIAA1188	calmin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24162875-4	chr17	24162807	24163007	+	895.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001361535)	TTS (NM_001361535)	826.0	NM_172935	245847.0	Mm.87319	NM_172935	ENSMUSG00000036820	Amdhd2	5730457F11Rik	amidohydrolase domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-68864898-4	chr11	68864743	68864943	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11712.0	NM_023668	83431.0	Mm.31979	NM_023668	ENSMUSG00000018736	Ndel1	2600006O07Rik|MITAP1|NUDEL|mNudel	nudE neurodevelopment protein 1 like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-165652248-2	chr1	165652148	165652348	+	909.3000490000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038846, intron 5 of 5)	intron (NM_001038846, intron 5 of 5)	-17707.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-32637747-3	chr12	32637628	32637828	+	674.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-182607.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	0.215063415899672	0.430882197494498	0.628495016609253	0.0876172380793701	0.337678090157115	0.438094922562645	0.0926159211015571	0.0882952162509975	-0.853658493428136	0.662590658551962	1
Merged-chr14-22308260-2	chr14	22308160	22308360	+	702.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028275, intron 2 of 6)	intron (NM_028275, intron 2 of 6)	234538.0	NR_046307	74896.0	Mm.444661	NR_046307	ENSMUSG00000114412	4930405A10Rik	4930456G20Rik	RIKEN cDNA 4930405A10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-125736413-2	chr2	125736313	125736513	+	673.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_177608)	TTS (NM_177608)	-12265.0	NM_199022	271849.0	Mm.425101	NM_199022	ENSMUSG00000035109	Shc4	6230417E10Rik|9930029B02Rik|Gm685|RaLP	SHC (Src homology 2 domain containing) family, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-137787317-4	chr5	137787224	137787424	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144913)	promoter-TSS (NM_144913)	-7.0	NM_001360023	381678.0	Mm.332765	NM_001005426	ENSMUSG00000037108	Zcwpw1	Gm1053	zinc finger, CW type with PWWP domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-94604808-4	chr6	94604783	94604983	+	934.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_026255)	TTS (NM_026255)	1532.0	NR_106008	102466992.0		NR_106008	ENSMUSG00000098531	Mir7041	Gm27872|mmu-mir-7041	microRNA 7041	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-18616750-2	chr19	18616545	18616745	+	943.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_017375, intron 1 of 9)	intron (NM_017375, intron 1 of 9)	15168.0	NM_017375	20409.0	Mm.172222	NM_017375	ENSMUSG00000024725	Ostf1	C78236|SH3P2|Sh3d3	osteoclast stimulating factor 1	protein-coding	0.576444636056676	1.01137331730375	1.35224076595536	0.78112074643303	0.578672234106418	0.613895799754102	1.36620897365108	1.40821942989384	0.405832764617439	0.798287975328204	0.998431161219273
Merged-chr2-116894062-4	chr2	116893938	116894138	+	958.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MamGypLTR3|LTR|Gypsy	-6114.0	NR_040336	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-12469645-2	chr19	12469545	12469745	+	670.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_172442, exon 9 of 9)	exon (NM_172442, exon 9 of 9)	8866.0	NM_010821	17476.0	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	-0.587870398093149	-0.577844173057627	-0.411261638898136	-0.583679001583404	-0.221109475414767	-0.0944855177428402	-0.580416717469393	-0.58323658975739	2.35061680242133	0.376574955254979	1
Merged-chr17-67133799-4	chr17	67133697	67133897	+	921.283325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 2 of 32)	intron (NM_001357625, intron 2 of 32)	-107562.0	NR_049205	100885844.0		NR_049205	ENSMUSG00000093508	Mir5709	Gm22041|mir-5709|mmu-mir-5709	microRNA 5709	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-125178652-3	chr5	125178563	125178763	+	943.2666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253905, intron 1 of 42)	CpG	551.0	NM_001253905	20602.0	Mm.278646	NM_011424	ENSMUSG00000029478	Ncor2	N-CoR|SMRT|SMRTe	nuclear receptor co-repressor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-66513944-2	chr9	66513844	66514044	+	737.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001302116)	TTS (NM_001302116)	649.0	NM_175206	74165.0	Mm.297998	NM_175206	ENSMUSG00000050503	Fbxl22	1110004B15Rik	F-box and leucine-rich repeat protein 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-80872593-2	chr12	80872493	80872693	+	785.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001242419, intron 5 of 6)	MTC|LTR|ERVL-MaLR	51854.0	NR_033786	67340.0	Mm.386790	NR_033786	ENSMUSG00000101912	1700052I22Rik	-	RIKEN cDNA 1700052I22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-11149328-4	chr10	11149252	11149452	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172937)	promoter-TSS (NM_172937)	-78.0	NM_001077707	268281.0	Mm.133101	NM_172937	ENSMUSG00000090112	Shprh	2610103K11Rik|AA450458|AU024614|BC006883|D230017O13Rik|E130018M05	SNF2 histone linker PHD RING helicase	protein-coding	6.24037299661338	6.56940697873326	6.69557150775316	5.80247867726678	6.31866759135141	5.9306532083944	5.86394826896706	6.06677483863938	-0.327659936801742	0.179930143531573	0.651549857774188
Merged-chr2-157838433-4	chr2	157838344	157838544	+	955.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025680, intron 11 of 15)	intron (NM_025680, intron 11 of 15)	-76209.0	NM_198627	277432.0	Mm.441156	NM_198627	ENSMUSG00000037843	Vstm2l	Gm691	V-set and transmembrane domain containing 2-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-120940513-3	chr7	120940399	120940599	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_025298, exon 18 of 21)	exon (NM_025298, exon 18 of 21)	22755.0	NM_001164096	26939.0	Mm.193632	NM_025298	ENSMUSG00000030880	Polr3e	RPC5|Sin	polymerase (RNA) III (DNA directed) polypeptide E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-27706817-1	chr15	27706717	27706917	+	564.0	f0_balb.idr	Intergenic	Intergenic	-25275.0	NM_001242423	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-100552206-2	chr13	100552106	100552306	+	803.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360536, intron 1 of 8)	CpG	292.0	NM_008756	18260.0	Mm.4807	NM_008756	ENSMUSG00000021638	Ocln	AI503564|Ocl	occludin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-50876615-4	chr17	50876517	50876717	+	951.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028162, intron 13 of 21)	intron (NM_028162, intron 13 of 21)	177936.0	NM_001297747	12228.0	Mm.392910	NM_009770	ENSMUSG00000022863	Btg3	ANA|tob5	B cell translocation gene 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-40800540-2	chr3	40800440	40800640	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045576, intron 1 of 15)	CpG	589.0	NR_045576	20873.0	Mm.3794	NM_011495	ENSMUSG00000025758	Plk4	1700028H20|AI385771|Sak|Stk18	polo like kinase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135722379-4	chr5	135722256	135722456	+	950.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008898, intron 2 of 15)	intron (NM_008898, intron 2 of 15)	13533.0	NR_106001	102466791.0		NR_106001	ENSMUSG00000099197	Mir7034	Gm27372|mmu-mir-7034	microRNA 7034	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116025487-2	chr11	116025387	116025587	+	918.6666869999999	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008211)	promoter-TSS (NM_008211)	-983.0	NM_008211	15081.0	Mm.18516	NM_008211	ENSMUSG00000016559	H3f3b	9430068D06Rik|H3.3B	H3 histone, family 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-43910846-3	chr1	43910767	43910967	+	904.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MusHAL1|LINE|L1	-23127.0	NM_001310540	22019.0	Mm.401675	NM_009418	ENSMUSG00000041763	Tpp2	TPP-2|TppII	tripeptidyl peptidase II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-122961577-2	chr4	122961477	122961677	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029662)	promoter-TSS (NM_029662)	-389.0	NM_029662	76574.0	Mm.331842	NM_029662	ENSMUSG00000028655	Mfsd2a	1700018O18Rik|Mfsd2|NLS1	major facilitator superfamily domain containing 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-49945640-4	chr18	49945530	49945730	+	989.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081371, intron 37 of 42)	intron (NM_001081371, intron 37 of 42)	-33797.0	NM_001177760	106869.0	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-21221691-3	chr11	21221573	21221773	+	638.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17359.0	NM_139061	245944.0	Mm.170103	NM_139061	ENSMUSG00000020128	Vps54	Hcc8|Vps54l|mSLP8|wr	VPS54 GARP complex subunit	protein-coding	0.669397513712236	0.420196711940362	0.874597601026494	0.406836887341878	0.676458349088891	0.928922390236437	1.10384041890331	0.407855446970682	1.15431110519757	0.50071398711389	1
Merged-chr2-129198646-4	chr2	129198497	129198697	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159593)	promoter-TSS (NM_001159593)	-176.0	NM_015747	20515.0	Mm.272675	NM_015747	ENSMUSG00000027397	Slc20a1	AI607883|Glvr-1|Glvr1	solute carrier family 20, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-47702516-4	chr8	47702423	47702623	+	908.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11408.0	NM_001359133	70925.0	Mm.393807	NM_172407	ENSMUSG00000038069	Cdkn2aip	4921511I16Rik|AW208986|CARF	CDKN2A interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45450745-2	chr7	45450645	45450845	+	972.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030678, intron 12 of 15)	B3|SINE|B2	9141.0	NM_010240	14325.0	Mm.30357	NM_010240	ENSMUSG00000050708	Ftl1	Ftl|Ftl-1|L-ferritin	ferritin light polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-5819773-2	chr6	5819673	5819873	+	617.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010063, intron 6 of 16)	intron (NM_010063, intron 6 of 16)	94134.0	NM_001191026	13426.0	Mm.20893	NM_010063	ENSMUSG00000029757	Dync1i1	DH IC-1|DHIC-1|DIC|Dncic1|IC74	dynein cytoplasmic 1 intermediate chain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-37815936-2	chr2	37815836	37816036	+	870.2999880000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_146122, intron 20 of 21)	intron (NM_146122, intron 20 of 21)	39687.0	NM_001163566	241324.0	Mm.392369	NM_001163566	ENSMUSG00000035403	Crb2	5930402A21|BC043114	crumbs family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-77794698-4	chr18	77794611	77794811	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_152167, exon 3 of 3)	non-coding (NR_152167, exon 3 of 3)	161.0	NM_013831	19201.0	Mm.57174	NM_013831	ENSMUSG00000025429	Pstpip2	MAYP|cmo	proline-serine-threonine phosphatase-interacting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-73417938-3	chr13	73417852	73418052	+	762.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49431.0	NM_145376	210992.0	Mm.284649	NM_145376	ENSMUSG00000021608	Lpcat1	2900035H07Rik|Aytl2|BB137372|BC005662|C87117|LPCAT|rd11	lysophosphatidylcholine acyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-113009788-4	chr5	113009750	113009950	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285806, intron 1 of 20)	intron (NM_001285806, intron 1 of 20)	5688.0	NM_001285806	320129.0	Mm.285619	NM_177078	ENSMUSG00000042249	Grk3	4833444A01Rik|AI851927|AW551196|Adrbk-2|Adrbk2|Bark-2	G protein-coupled receptor kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-165663917-4	chr1	165663825	165664025	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178593, intron 2 of 6)	intron (NM_178593, intron 2 of 6)	-29384.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-44164341-5	chr13	44164219	44164419	+	888.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43152.0	NR_045285	328235.0	Mm.188356	NR_045285	ENSMUSG00000089815	Gm5083	A730030A06	predicted gene 5083	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-5064905-2	chr2	5064805	5065005	+	640.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181848)	promoter-TSS (NM_181848)	-788.0	NM_001356487	71648.0	Mm.116942	NM_181848	ENSMUSG00000026672	Optn	4930441O07Rik|FIP2|HYPL|NRP	optineurin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-60910918-4	chr2	60910804	60911004	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	-29466.0	NM_001141931	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44401878-4	chr7	44401793	44401993	+	900.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M3|LINE|L1	17767.0	NM_016663	20981.0	Mm.4824	NM_016663	ENSMUSG00000030731	Syt3	AI385753|sytIII	synaptotagmin III	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-4385932-2	chr10	4385832	4386032	+	594.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033466, intron 1 of 2)	intron (NM_001033466, intron 1 of 2)	1543.0	NM_001359811	381990.0	Mm.262466	NM_001033466	ENSMUSG00000075327	Zbtb2	Gm1103	zinc finger and BTB domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-9171261-3	chr13	9171161	9171361	+	885.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001311117, exon 17 of 17)	3' UTR (NM_001311117, exon 17 of 17)	77380.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-79408901-4	chr15	79408780	79408980	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5577.0	NM_172608	223693.0	Mm.323358	NM_172608	ENSMUSG00000009035	Tmem184b	2610507A11|4732495E13Rik	transmembrane protein 184b	protein-coding	2.1537882856016	2.76110911867808	3.97190067257609	2.8318282494457	3.21787778906019	3.04182695718109	3.14805723056064	3.22514277248532	0.0706775761958829	0.917466841343267	0.998431161219273
Merged-chr5-108132679-4	chr5	108132579	108132779	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361467)	promoter-TSS (NM_001361467)	-59.0	NM_001361467	73130.0	Mm.363960	NM_028876	ENSMUSG00000063406	Tmed5	3110020O18Rik|4432412D15Rik|p24gamma2	transmembrane p24 trafficking protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-112895970-4	chr12	112895873	112896073	+	922.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MCa|LINE|L1	24568.0	NR_105906	102465567.0		NR_105906	ENSMUSG00000098338	Mir6941	Gm27923|mmu-mir-6941	microRNA 6941	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180226017-4	chr1	180225908	180226108	+	922.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011183)	TTS (NM_011183)	19942.0	NM_011183	19165.0	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-24090518-3	chr10	24090433	24090633	+	960.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001010837)	TTS (NM_001010837)	1761.0	NM_001010837	382348.0	Mm.377897	NM_001010837	ENSMUSG00000100186	Taar8b	Gm1149|taR-8b	trace amine-associated receptor 8B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-120602119-4	chr9	120602004	120602204	+	890.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24773.0	NR_073359	76100.0	Mm.48212	NR_073359	ENSMUSG00000052658	5830454E08Rik	-	RIKEN cDNA 5830454E08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-94541210-2	chr15	94541110	94541310	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172437, intron 1 of 8)	intron (NM_172437, intron 1 of 8)	2297.0	NM_172437	78895.0	Mm.34344	NM_172437	ENSMUSG00000033356	Pus7l	3000003F02Rik	pseudouridylate synthase 7-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52985895-2	chr13	52985795	52985995	+	699.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4856.0	NM_017373	18030.0	Mm.136604	NM_017373	ENSMUSG00000056749	Nfil3	AV225605|E4BP4	nuclear factor, interleukin 3, regulated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-65569993-3	chr6	65569923	65570123	+	809.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20375.0	NM_001001495	414084.0	Mm.117558	NM_001001495	ENSMUSG00000044162	Tnip3	9030611K07Rik|ABIN-3|LIND	TNFAIP3 interacting protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-80207380-4	chr17	80207273	80207473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_036615)	promoter-TSS (NR_036615)	-68.0	NM_001195485	225027.0	Mm.292016	NM_146083	ENSMUSG00000024097	Srsf7	35kDa|9430065L19Rik|9G8|NX-96|Sfrs7	serine/arginine-rich splicing factor 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-91353463-2	chr1	91353363	91353563	+	996.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027551, intron 1 of 7)	intron (NM_027551, intron 1 of 7)	2390.0	NM_027551	70788.0	Mm.68617	NM_027551	ENSMUSG00000026308	Klhl30	4631423F02Rik	kelch-like 30	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-11180052-3	chr8	11179961	11180161	+	997.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-132744.0	NM_009932	12827.0	Mm.181021	NM_009932	ENSMUSG00000031503	Col4a2	Col4a-2	collagen, type IV, alpha 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32629030-2	chr2	32628930	32629130	+	650.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021515)	promoter-TSS (NM_021515)	-470.0	NM_021515	11636.0	Mm.29189	NM_021515	ENSMUSG00000026817	Ak1	Ak-1|B430205N08Rik	adenylate kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-31350441-3	chr12	31350352	31350552	+	956.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007861, intron 1 of 13)	intron (NM_007861, intron 1 of 13)	1019.0	NM_007861	13382.0	Mm.3131	NM_007861	ENSMUSG00000020664	Dld	-	dihydrolipoamide dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70841285-4	chr8	70841177	70841377	+	915.479126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_032397)	TTS (NM_032397)	-1557.0	NM_027560	70807.0	Mm.24215	NM_027560	ENSMUSG00000002910	Arrdc2	4632416I05Rik|Ilad1	arrestin domain containing 2	protein-coding	4.38834266134466	5.0162235739434	3.57559245832171	3.9423340590634	4.42157805339911	4.57686775207137	3.14937595503418	4.45315424607822	-0.104699564438929	0.83070461738062	0.998431161219273
Merged-chr11-69412557-1	chr11	69412457	69412657	+	1000.0	f1_balb.idr	intron (NM_001017426, intron 1 of 22)	MIRb|SINE|MIR	1118.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	-1.20406370813143	-1.56956373024278	-1.57884638916872	-1.58647144159385	-1.598104728449	-1.56755213932999	-1.57674499865798	-1.58510656085539	-1.70745470802464	0.626337835847419	1
Merged-chr2-167009321-2	chr2	167009221	167009421	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-5992.0	NM_153065	228889.0	Mm.295031	NM_153065	ENSMUSG00000017999	Ddx27	C86129	DEAD (Asp-Glu-Ala-Asp) box polypeptide 27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-25603542-4	chr8	25603506	25603706	+	944.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001735, intron 1 of 9)	intron (NM_001001735, intron 1 of 9)	1322.0	NM_001308482	234135.0	Mm.217337	NM_001001735	ENSMUSG00000054823	Nsd3	6720429E03|A530023P05|AI528490|WHISTLE|Whsc1l1	nuclear receptor binding SET domain protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131967439-3	chr1	131967335	131967535	+	770.027771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177628, intron 1 of 4)	intron (NM_001177628, intron 1 of 4)	-3174.0	NM_145977	212980.0	Mm.200307	NM_145977	ENSMUSG00000026435	Slc45a3	2210413P12Rik|AU023994|AU043764|IPCA-6|PRST|Pcanap6	solute carrier family 45, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-65396983-4	chr3	65396887	65397087	+	831.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4434.0	NM_026155	67437.0	Mm.232728	NM_026155	ENSMUSG00000027828	Ssr3	0610038P07Rik|AL022999|AU022074|AW553833|TRAPG	signal sequence receptor, gamma	protein-coding	1.81157964299556	0.891566036840041	1.09861553973348	2.14676408574976	1.65834777420905	0.895414651574175	1.10617403171142	1.40345533614708	-0.982746524579488	0.452702501005112	0.91869698872066
Merged-chr4-63215363-4	chr4	63215277	63215477	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025685)	promoter-TSS (NM_025685)	-35.0	NM_025685	373864.0	Mm.194116	NM_025685	ENSMUSG00000045672	Col27a1	5730512J02Rik|AI449266	collagen, type XXVII, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-21462824-4	chr12	21462707	21462907	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45371.0	NM_011739	22630.0	Mm.289630	NM_011739	ENSMUSG00000076432	Ywhaq	2700028P07Rik|AA409740|AU021156|R74690	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	protein-coding	2.535112172653	3.17857619515405	3.07300789876765	2.06479580940039	3.23220771031951	3.20161881419252	3.491264241347	2.68895111272338	0.715810425929412	0.290922038655208	0.795742750399449
Merged-chr3-16181413-4	chr3	16181319	16181519	+	958.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	-1746.0	NM_001358043	229096.0	Mm.23834	NM_172677	ENSMUSG00000047213	Ythdf3	9130022A11Rik	YTH domain family 3	protein-coding	2.03825562543743	2.16237034981301	1.23872557801991	2.02071653018614	1.40679361922455	3.35787043439395	2.48519329996984	2.40339616135586	1.50067549074822	0.119521519626578	0.541957366772367
Merged-chr19-10858909-2	chr19	10858809	10859009	+	842.25	f1_balb.idr|f1_c57bl6.idr	TTS (NM_023044)	TTS (NM_023044)	10870.0	NM_133804	98170.0	Mm.490254	NM_133804	ENSMUSG00000024736	Tmem132a	6720481D13Rik|Hspa5bp1|Orai1|R74613	transmembrane protein 132A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-152363605-4	chr2	152363488	152363688	+	937.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033505, intron 2 of 4)	intron (NR_033505, intron 2 of 4)	12978.0	NM_001009948	228777.0	Mm.330667	NM_001009948	ENSMUSG00000059361	Nrsn2	Gm123|Neurensin-2	neurensin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-73521992-2	chr2	73521892	73522092	+	568.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	7495.0	NM_153138	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-32903433-4	chr13	32903329	32903529	+	993.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT-int|LTR|ERVL-MaLR	-5289.0	NM_173051	380839.0	Mm.250802	NM_173051	ENSMUSG00000079049	Serpinb1c	EIC|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 1c	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-144854253-2	chr5	144854153	144854353	+	963.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081362, intron 68 of 70)	intron (NM_001081362, intron 68 of 70)	42563.0	NR_106006	102465629.0		NR_106006	ENSMUSG00000098822	Mir7039	Gm27824|mmu-mir-7039	microRNA 7039	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-117873633-2	chr6	117873533	117873733	+	660.666626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001360938)	TTS (NM_001360938)	10752.0	NM_001001792	22685.0	Mm.249661	NM_008616	ENSMUSG00000042097	Zfp239	Mok-2|Mok2|Znf239	zinc finger protein 239	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-61958396-3	chr7	61958293	61958493	+	775.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015599, intron 3 of 3)	RMER15-int|LTR|ERVL	-18287.0	NR_030557	100124439.0		NR_030557	ENSMUSG00000093187	Mir344-2	Mirn344-2|mir-344-2	microRNA 344-2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-117375670-2	chr12	117375570	117375770	+	550.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR21|LTR|ERVK	-38658.0	NR_044987	432713.0	Mm.459210	NR_044987	ENSMUSG00000101930	Gm5441	-	predicted gene 5441	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-54794036-3	chr12	54793946	54794146	+	701.972229	f0_balb.idr|f0_c57.idr|f1_balb.idr	intron (NM_026998, intron 2 of 13)	B3A|SINE|B2	1616.0	NM_026998	72183.0	Mm.28240	NM_026998	ENSMUSG00000005656	Snx6	2010006G21Rik|2610032J07Rik|2810425K19Rik|AU018928|C85963	sorting nexin 6	protein-coding	3.16228165040689	2.91099626010367	1.46769606147742	2.09264287142562	3.39425000240905	2.57138950387145	2.17309392340348	2.92657159485547	0.501826039761489	0.551669144655119	0.959312344950351
Merged-chr5-90660147-1	chr5	90660047	90660247	+	732.0	f1_balb.idr	Intergenic	B4A|SINE|B4	-19620.0	NM_001310656	73246.0	Mm.30172	NM_028478	ENSMUSG00000029370	Rassf6	1600016B17Rik	Ras association (RalGDS/AF-6) domain family member 6	protein-coding	-0.576103116143927	-0.56524320011383	-0.56880878227519	-0.57155465929587	-0.306727442024994	0.0530164118332149	-0.388964700855418	-0.571075282690008	3.3821345568199	0.189378845415184	1
Merged-chr15-101128326-2	chr15	101128259	101128459	+	751.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001277259)	promoter-TSS (NM_001277259)	-163.0	NM_001277258	11482.0	Mm.279542	NM_009612	ENSMUSG00000000530	Acvrl1	AI115505|AI427544|Acvrlk1|Alk1	activin A receptor, type II-like 1	protein-coding	-0.181584291154345	0.186415531315475	-0.563955759460402	-0.567066044041013	-0.57146793092527	-0.559023612987217	-0.563067329362004	-0.56652240576314	-3.47808267786897	0.200928966268721	1
Merged-chr18-84846671-1	chr18	84846571	84846771	+	574.0	f0_balb.idr	Intergenic	Intergenic	-4667.0	NM_025797	109672.0	Mm.31018	NM_025797	ENSMUSG00000024646	Cyb5a	0610009N12Rik|Cyb5	cytochrome b5 type A (microsomal)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-3202449-3	chr15	3202350	3202550	+	783.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68317.0	NM_001042613	20363.0	Mm.392203	NM_009155	ENSMUSG00000064373	Selenop	AU018766|D15Ucla1|Se-P|Sepp1|selp	selenoprotein P	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-91878027-4	chr6	91877983	91878183	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172730)	promoter-TSS (NM_172730)	30.0	NM_172730	232236.0	Mm.234879	NM_172730	ENSMUSG00000034083	Ccdc174	C130022K22Rik	coiled-coil domain containing 174	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-45545619-4	chr17	45545454	45545654	+	679.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001013749, exon 3 of 3)	exon (NM_001013749, exon 3 of 3)	4123.0	NM_001013749	210573.0	Mm.329064	NM_001013749	ENSMUSG00000096847	Tmem151b	Gm323	transmembrane protein 151B	protein-coding	-1.21759957216335	-0.70430355617078	-1.20202188649919	-1.21090182969551	-1.06671509363092	-1.18886888879882	-1.19957466026017	-1.20931232410898	-1.51690879438767	0.646818360931408	1
Merged-chr6-71493932-4	chr6	71493839	71494039	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001308303)	promoter-TSS (NM_001308303)	62.0	NM_001308303	22644.0	Mm.422969	NM_009543	ENSMUSG00000052656	Rnf103	AW146237|AW212918|Zfp103|kf-1	ring finger protein 103	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133941659-4	chr4	133941558	133941758	+	976.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26333.0	NM_016957	15331.0	Mm.319660	NM_016957	ENSMUSG00000003038	Hmgn2	HMG-17|Hmg17	high mobility group nucleosomal binding domain 2	protein-coding	2.01725562668389	1.37961476442982	2.69872275380143	1.30071388107524	3.18714357049644	2.30316920732612	2.72095097015895	3.29133021243359	1.95026781511972	0.0312041679883756	0.243457282903795
Merged-chr15-38288552-2	chr15	38288452	38288652	+	787.625	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11348.0	NM_001357677	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-7493202-2	chr19	7493102	7493302	+	671.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163505)	promoter-TSS (NM_001163505)	-838.0	NM_001163505	109168.0	Mm.264016	NM_146091	ENSMUSG00000024759	Atl3	4633402C03Rik|5730596K20Rik|AI465397|AW228836	atlastin GTPase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-69089510-4	chr8	69089397	69089597	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153054)	promoter-TSS (NM_153054)	-275.0	NM_153054	110877.0	Mm.19301	NM_153054	ENSMUSG00000036330	Slc18a1	4832416I10Rik|Vat1|Vmat1	solute carrier family 18 (vesicular monoamine), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-68853170-4	chr11	68853057	68853257	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023668)	promoter-TSS (NM_023668)	-26.0	NM_023668	83431.0	Mm.31979	NM_023668	ENSMUSG00000018736	Ndel1	2600006O07Rik|MITAP1|NUDEL|mNudel	nudE neurodevelopment protein 1 like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-90617719-1	chr3	90617619	90617819	+	588.0	f0_c57.idr	Intergenic	B3A|SINE|B2	4825.0	NM_011313	20200.0	Mm.100144	NM_011313	ENSMUSG00000001025	S100a6	2A9|5B10|CALCYCLIN|Cacy|PRA	S100 calcium binding protein A6 (calcyclin)	protein-coding	0.160887847091766	0.197920748142062	1.25372294143612	0.176794790926764	0.365200460046708	0.200541851925102	1.52550393967086	0.178436539918029	0.662218424616193	0.840817801508829	0.998431161219273
Merged-chr9-31252505-3	chr9	31252393	31252593	+	829.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	BC1_Mm|scRNA|scRNA	-18908.0	NM_001101597	638580.0	Mm.373655	NM_001101597		Gm7244	EG638580	predicted gene 7244	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91650107-4	chr2	91649995	91650195	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033451)	promoter-TSS (NM_001033451)	-23.0	NR_027372	228359.0	Mm.22413	NM_146124	ENSMUSG00000027247	Arhgap1	B230365D05Rik|C76222|Cdc42GAP|p50rhoGAP	Rho GTPase activating protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-77763286-4	chr11	77763223	77763423	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-13912.0	NM_001291213	360013.0	Mm.341248	NM_011586	ENSMUSG00000000631	Myo18a	MAJN|MyoPDZ|MysPDZ|SP-R210	myosin XVIIIA	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100846434-2	chr7	100846334	100846534	+	650.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177073, exon 11 of 11)	3' UTR (NM_177073, exon 11 of 11)	16979.0	NM_001358914	320100.0	Mm.40336	NM_177073	ENSMUSG00000008318	Relt	E430021K24Rik|Tnfrsf19l	RELT tumor necrosis factor receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-84828385-4	chr11	84828306	84828506	+	932.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_046281)	promoter-TSS (NR_046281)	597.0	NM_177564	192970.0	Mm.192213	NM_177564	ENSMUSG00000034449	Dhrs11	-	dehydrogenase/reductase (SDR family) member 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-14842596-4	chr9	14842506	14842706	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17604.0	NM_001310734	14608.0	Mm.4672	NM_010287	ENSMUSG00000031932	Gpr83	AW045253|Gir|Gpr72|RP105|RP39|RP82	G protein-coupled receptor 83	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3684169-2	chr4	3684066	3684266	+	632.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 1 of 12)	RLTR20D|LTR|ERVK	6045.0	NM_010747	17096.0	Mm.317331	NM_010747	ENSMUSG00000042228	Lyn	AA407514|Hck-2|p53Lyn|p56Lyn	LYN proto-oncogene, Src family tyrosine kinase	protein-coding	1.17874486136076	0.892957681189119	1.17590837563632	0.653460885519676	1.19051583995477	1.69221146427749	0.871015543397524	0.655066119072361	0.753585794261723	0.605469076291283	0.974576632476413
Merged-chr11-117947162-1	chr11	117947062	117947262	+	1000.0	f0_c57.idr	Intergenic	Intergenic	22204.0	NM_007707	12702.0	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115091543-2	chr11	115091443	115091643	+	781.5	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001163753, exon 1 of 9)	5' UTR (NM_001163753, exon 1 of 9)	112.0	NM_001163753	58222.0	Mm.143789	NM_021411	ENSMUSG00000020732	Rab37	B230331O03Rik|B230354I04Rik	RAB37, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-161896256-4	chr1	161896164	161896364	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19582.0	NM_001357402	226551.0	Mm.170002	NM_172645	ENSMUSG00000040297	Suco	4732491B11|AI848100|AU016931|Opt	SUN domain containing ossification factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117449138-2	chr8	117449038	117449238	+	740.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028941, intron 14 of 20)	intron (NM_028941, intron 14 of 20)	-3885.0	NR_106045	102466801.0		NR_106045	ENSMUSG00000099062	Mir7077	Gm27774|mmu-mir-7077	microRNA 7077	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120668222-4	chr8	120668135	120668335	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001293559)	promoter-TSS (NM_001293559)	10.0	NM_009941	12857.0	Mm.386758	NM_009941	ENSMUSG00000031818	Cox4i1	AL024441|COX|COX IV-1|COXIV|Cox4|Cox4a|IV-1	cytochrome c oxidase subunit 4I1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-163062971-2	chr2	163062871	163063071	+	604.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008652, intron 4 of 13)	intron (NM_008652, intron 4 of 13)	-5119.0	NR_105970	102465607.0		NR_105970	ENSMUSG00000099091	Mir7003	Gm27340|mmu-mir-7003	microRNA 7003	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-146617136-2	chr6	146617040	146617240	+	1000.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_026281, intron 6 of 11)	L1MC4|LINE|L1	17452.0	NM_026281	67623.0	Mm.278037	NM_026281	ENSMUSG00000040234	Tm7sf3	2010003B14Rik|NARP1	transmembrane 7 superfamily member 3	protein-coding	1.00601289616667	2.25327582087782	1.74852327184271	1.05057818200499	2.50653077069611	2.90681001702811	1.92340660454479	1.31426777566203	1.64507839760622	0.143478877899794	0.591443869750575
Merged-chr14-122986779-4	chr14	122986825	122987025	+	931.158325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3642.0	NR_153663	70551.0	Mm.271988	NM_028651	ENSMUSG00000041594	Tmtc4	4930403J22Rik|5730419O14Rik	transmembrane and tetratricopeptide repeat containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101153605-2	chr15	101153505	101153705	+	915.625	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20467.0	NM_007395	11479.0	Mm.308467	NM_007395	ENSMUSG00000000532	Acvr1b	6820432J04|ALK-4|ActR-IB|ActRIB|Acvrlk4|Alk4|SKR2	activin A receptor, type 1B	protein-coding	2.74790593031413	3.18236910348397	2.98906907557637	3.06243601360488	2.11730568974212	1.46939970928865	3.44912882440842	1.37712948422176	-1.06349635794501	0.235570577702055	0.731942609741049
Merged-chr11-76033981-4	chr11	76033883	76034083	+	814.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6201.0	NM_029658	76566.0	Mm.34131	NM_029658	ENSMUSG00000020846	Rflnb	1500005K14Rik|Fam101b|RefilinB|cfm	refilin B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-62753007-4	chr5	62752920	62753120	+	909.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178407, intron 1 of 32)	intron (NM_178407, intron 1 of 32)	13157.0	NM_178407	212285.0	Mm.244403	NM_178407	ENSMUSG00000037999	Arap2	Centd1|Gm148|mKIAA0580	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33833918-4	chr16	33833831	33834031	+	725.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 1 of 14)	intron (NM_001145884, intron 1 of 14)	4266.0	NM_001145884	16419.0	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97144159-2	chr11	97144059	97144259	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198100, intron 6 of 8)	intron (NM_198100, intron 6 of 8)	2260.0	NR_106094	102466822.0		NR_106094	ENSMUSG00000099286	Mir7235	Gm27986|mmu-mir-7235	microRNA 7235	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-114613951-2	chr5	114613851	114614051	+	564.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001004180)	TTS (NM_001004180)	44470.0	NM_022017	63873.0	Mm.266450	NM_022017	ENSMUSG00000014158	Trpv4	0610033B08Rik|OTRPC4|Trp12|VR-OAC|VRL-2|VROAC	transient receptor potential cation channel, subfamily V, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-76649367-2	chr11	76649267	76649467	+	689.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-23103.0	NM_177182	320522.0	Mm.131585	NM_177182	ENSMUSG00000044243	Bhlha9	A830053O21Rik|Fingerin	basic helix-loop-helix family, member a9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-67931906-3	chr18	67931799	67931999	+	657.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1274.0	NM_172631	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152830764-2	chr1	152830664	152830864	+	664.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_010877, intron 10 of 15)	intron (NM_010877, intron 10 of 15)	30611.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-39725554-4	chr6	39725453	39725653	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_139294)	promoter-TSS (NM_139294)	-90.0	NM_139294	109880.0	Mm.245513	NM_139294	ENSMUSG00000002413	Braf	9930012E13Rik|AA120551|AA387315|AA473386|B-raf|Braf-2|Braf2|C230098H17|C87398|D6Ertd631e	Braf transforming gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-92086070-1	chr16	92085970	92086170	+	544.0	f1_c57bl6.idr	3' UTR (NM_017391, exon 2 of 2)	3' UTR (NM_017391, exon 2 of 2)	27734.0	NM_080456	121022.0	Mm.217354	NM_080456	ENSMUSG00000039680	Mrps6	AW046321	mitochondrial ribosomal protein S6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-25715994-2	chr3	25715894	25716094	+	638.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357095, intron 4 of 6)	ID_B1|SINE|B4	437992.0	NM_001163387	192167.0	Mm.316080	NM_138666	ENSMUSG00000063887	Nlgn1	6330415N05Rik|BB179718|NL1|Nlg1|mKIAA1070	neuroligin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-98153843-4	chr15	98153743	98153943	+	792.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170711, intron 1 of 3)	intron (NM_001170711, intron 1 of 3)	-8141.0	NM_001170710	78541.0	Mm.200766	NM_030121	ENSMUSG00000048175	Asb8	4930539L19Rik|AI788835|C430011H06Rik	ankyrin repeat and SOCS box-containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91282508-2	chr2	91282408	91282608	+	608.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001311144, exon 6 of 9)	exon (NM_001311144, exon 6 of 9)	17393.0	NM_023854	77038.0	Mm.43636	NM_023854	ENSMUSG00000027255	Arfgap2	2310032E02Rik|Zfp289	ADP-ribosylation factor GTPase activating protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-134629681-2	chr5	134629581	134629781	+	753.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_033561, intron 1 of 6)	intron (NM_033561, intron 1 of 6)	9728.0	NM_001312867	22384.0	Mm.27955	NM_033561	ENSMUSG00000040731	Eif4h	AU018978|D5Ertd355e|E430026L18Rik|Ef4h|Wbscr1|Wscr1|eIF-4H	eukaryotic translation initiation factor 4H	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41933384-4	chr19	41933287	41933487	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164561)	promoter-TSS (NM_001164561)	-58.0	NM_001360679	74168.0	Mm.20387	NM_023740	ENSMUSG00000025157	Zdhhc16	1500015N03Rik|Aph2	zinc finger, DHHC domain containing 16	protein-coding	5.42455659267021	4.29576918467252	5.53132431460874	5.80365581642417	4.66772206438777	5.32848534874667	4.94383170409764	5.06728533796764	-0.420402079907244	0.232665854626098	0.727877916220547
Merged-chr3-95509044-3	chr3	95508933	95509133	+	874.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007802, exon 8 of 8)	3' UTR (NM_007802, exon 8 of 8)	9823.0	NM_007802	13038.0	Mm.272085	NM_007802	ENSMUSG00000028111	Ctsk	AI323530|MMS10-Q|Ms10q|catK	cathepsin K	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-56903168-4	chr14	56903059	56903259	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029498, exon 3 of 25)	exon (NM_029498, exon 3 of 25)	16316.0	NM_001360643	76007.0	Mm.31417	NM_029498	ENSMUSG00000021945	Zmym2	5830413P05Rik|FIM|MYM|RAMP|SCLL|Zfp198|Znf198	zinc finger, MYM-type 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-40221726-4	chr12	40221634	40221834	+	939.2666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_035459)	TTS (NR_035459)	1077.0	NR_035459	100316693.0		NR_035459	ENSMUSG00000089371	Mir1938	mir-1938|mmu-mir-1938	microRNA 1938	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-44068786-3	chr10	44068703	44068903	+	908.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63957.0	NM_172393	11630.0	Mm.292082	NM_172393	ENSMUSG00000019866	Crybg1	AI462491|AI463325|Aim1	crystallin beta-gamma domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-44423256-2	chr19	44423156	44423356	+	631.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15547.0	NM_009127	20249.0	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-130621420-4	chr7	130621310	130621510	+	831.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_206856, intron 2 of 20)	B4|SINE|B4	43926.0	NM_206856	57752.0	Mm.86322	NM_021314	ENSMUSG00000030852	Tacc2	mKIAA4180	transforming, acidic coiled-coil containing protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-160620974-2	chr2	160620874	160621074	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24923.0	NM_009408	21969.0	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-62348353-7	chr4	62348269	62348469	+	932.6904910000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355385, intron 2 of 27)	intron (NM_001355385, intron 2 of 27)	12227.0	NM_001355385	338355.0	Mm.357792	NM_001045528	ENSMUSG00000066151	Fkbp15	BB131447|C430014M02Rik|FKBO133|FKBP-133|FKBP-15|FKBP133|mKIAA0674	FK506 binding protein 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-29092340-1	chr17	29092240	29092440	+	541.0	f1_c57bl6.idr	intron (NM_001111099, intron 1 of 2)	intron (NM_001111099, intron 1 of 2)	1361.0	NM_001111099	12575.0	Mm.195663	NM_007669	ENSMUSG00000023067	Cdkn1a	CAP20|CDKI|CIP1|Cdkn1|P21|SDI1|Waf1|mda6|p21Cip1|p21WAF	cyclin-dependent kinase inhibitor 1A (P21)	protein-coding	-0.247137448685975	-0.499809330180183	-0.503572287011895	0.204335036435296	-0.36545064350467	-0.498960252227264	-0.502742873134396	-0.505965080381391	-2.5784581114385	0.316528447232762	1
Merged-chr11-21007723-2	chr11	21007623	21007823	+	560.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-83601.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-130711729-2	chr3	130711629	130711829	+	617.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2285.0	NM_025509	66357.0	Mm.300697	NM_025509	ENSMUSG00000041084	Ostc	2310008M10Rik|5730557H03Rik	oligosaccharyltransferase complex subunit (non-catalytic)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-22307041-2	chr9	22306941	22307141	+	876.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_145612, intron 1 of 7)	intron (NM_145612, intron 1 of 7)	597.0	NM_145612	235050.0	Mm.306038	NM_145612	ENSMUSG00000066829	Zfp810	BC005471	zinc finger protein 810	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-32951005-4	chr19	32950903	32951103	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	193426.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-119979110-3	chr9	119979015	119979215	+	771.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153287, intron 1 of 4)	L2|LINE|L2	3908.0	NM_001357560	215418.0	Mm.491094	NM_153287	ENSMUSG00000032515	Csrnp1	4931429D10Rik|Axud1|CSRNP-1|URAX1|taip-3	cysteine-serine-rich nuclear protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-61751357-2	chr10	61751257	61751457	+	809.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_207000, intron 4 of 8)	B1_Mus2|SINE|Alu	-23380.0	NR_039568	100628583.0		NR_039568	ENSMUSG00000093017	Mir5108	mmu-mir-5108|mu-mir-5108	microRNA 5108	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-102817464-2	chr2	102817382	102817582	+	611.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039150, intron 13 of 13)	URR1A|DNA|hAT-Charlie	-70722.0	NR_153853	102637542.0	Mm.371582	NR_153852		Gm13872	-	predicted gene 13872	ncRNA	-0.270473361320337	-0.254494877293774	-0.259707834418632	0.575858729701639	0.334766236424392	-0.253322624948879	-0.258556299249614	-0.263038063048258	-0.676198526021959	0.791597786673875	1
Merged-chr3-95966034-2	chr3	95965934	95966134	+	684.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19476.0	NR_045872	668224.0	Mm.357766	NR_045872		Gm9054	EG668224	predicted gene 9054	ncRNA	-0.000424483355549843	0.0197000945989027	0.0131507523657748	0.00806920837266789	0.296761420933649	0.686648643225811	0.839769435123506	0.00895878567431907	4.15972086308427	0.050487148814062	1
Merged-chr17-64583999-2	chr17	64583899	64584099	+	698.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17650.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-114932755-1	chr9	114932655	114932855	+	744.0	f1_balb.idr	intron (NM_175380, intron 1 of 7)	intron (NM_175380, intron 1 of 7)	1232.0	NM_175380	333433.0	Mm.38198	NM_175380	ENSMUSG00000050627	Gpd1l	2210409H23Rik|D9Ertd660e	glycerol-3-phosphate dehydrogenase 1-like	protein-coding	3.15973009871442	2.71690745876887	1.42008026438961	2.65674319612732	3.30534406250774	3.91611473569219	1.43226523203863	2.55172385401092	0.802875323451717	0.371303848872647	0.863911489096448
Merged-chr17-81480547-4	chr17	81480450	81480650	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 2 of 8)	intron (NR_104580, intron 2 of 8)	257837.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-31902466-4	chr11	31902384	31902584	+	971.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290678, intron 2 of 7)	intron (NM_001290678, intron 2 of 7)	31544.0	NM_026252	67579.0	Mm.339792	NM_026252	ENSMUSG00000020300	Cpeb4	Cpe-bp4|Cpeb-4|mCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding	3.13936754984047	3.22983574619551	3.01488512056903	3.38236068988344	3.0840700230258	3.69267122884367	3.24590565187298	3.47229678501859	0.314138851265617	0.579183005605058	0.965985075107763
Merged-chr15-83122234-4	chr15	83122157	83122357	+	906.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358061, intron 1 of 3)	intron (NM_001358061, intron 1 of 3)	544.0	NM_001358061	74778.0	Mm.30056	NM_029101	ENSMUSG00000018040	Rrp7a	1110014J01Rik|AA408146|Kheg1	ribosomal RNA processing 7 homolog A (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-67849386-2	chr5	67849286	67849486	+	563.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1955.0	NM_001038999	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-123797916-2	chr6	123797816	123798016	+	585.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001104639, intron 3 of 5)	Lx|LINE|L1	18945.0	NM_001104639	243628.0	Mm.469873	NM_001104639	ENSMUSG00000072780	Vmn2r24	EG243628	vomeronasal 2, receptor 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27111716-2	chr17	27111616	27111816	+	659.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_080553, exon 38 of 58)	exon (NM_080553, exon 38 of 58)	20471.0	NR_106142	102465779.0		NR_106142	ENSMUSG00000098826	Mir7677	Gm27400|mmu-mir-7677	microRNA 7677	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-47998148-3	chr18	47998041	47998241	+	895.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045404, intron 2 of 3)	intron (NR_045404, intron 2 of 3)	-47194.0	NM_001025388	433182.0	Mm.70666	NM_001025388	ENSMUSG00000059040	Eno1b	EG433182|Eno1|Gm5506	enolase 1B, retrotransposed	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-10390793-4	chr12	10390681	10390881	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023697)	promoter-TSS (NM_023697)	1.0	NM_023697	105014.0	Mm.119343	NM_023697	ENSMUSG00000020621	Rdh14	3110030G19Rik|AW215439|PAN2	retinol dehydrogenase 14 (all-trans and 9-cis)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-70472457-4	chr18	70472355	70472555	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289649)	promoter-TSS (NM_001289649)	1.0	NM_029019	170461.0	Mm.83623	NM_029019	ENSMUSG00000079608	Stard6	1700011K09Rik|4833424I06Rik|4933429L05Rik|AI644424	StAR-related lipid transfer (START) domain containing 6	protein-coding	4.33091430984096	2.65589058390584	4.20017845651544	3.63648163850276	3.80640303865029	3.73213819160915	5.05079559222137	3.19390013956326	0.383918509564535	0.509657751073058	0.944722478737442
Merged-chr8-11552779-2	chr8	11552679	11552879	+	721.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2008.0	NM_001359137	71941.0	Mm.196576	NM_024248	ENSMUSG00000056228	Cars2	2310051N18Rik|2410044A07Rik|D530030H10Rik|cysRS	cysteinyl-tRNA synthetase 2 (mitochondrial)(putative)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-115217017-4	chr7	115216950	115217150	+	946.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	265776.0	NR_040319	101786.0	Mm.395157	NR_040317	ENSMUSG00000108379	A730082K24Rik	AU044236	RIKEN cDNA A730082K24 gene	ncRNA	4.53181362959363	3.33704087927594	2.78493011136966	4.2509206824446	4.9662209467506	3.87932017114815	4.39731051652119	4.16630627600545	0.670382108995239	0.196118109904186	0.67745443837728
Merged-chr8-84068836-4	chr8	84068730	84068930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009055, intron 1 of 20)	intron (NM_009055, intron 1 of 20)	1994.0	NM_009055	19724.0	Mm.7892	NM_009055	ENSMUSG00000031706	Rfx1	AI047719|AI385641	regulatory factor X, 1 (influences HLA class II expression)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56608736-2	chr17	56608636	56608836	+	714.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_153152, intron 2 of 3)	intron (NM_153152, intron 2 of 3)	1035.0	NM_153152	224904.0	Mm.34002	NM_153152	ENSMUSG00000049760	2410015M20Rik	Mic13|QIL1|sr104	RIKEN cDNA 2410015M20 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-36937573-1	chr14	36937473	36937673	+	550.0	f0_balb.idr	intron (NM_027045, intron 3 of 10)	intron (NM_027045, intron 3 of 10)	-2005.0	NM_028407	72972.0	Mm.27621	NM_027045	ENSMUSG00000058690	Ccser2	1700012P13Rik|2900054P12Rik|AI035535|AW108503|Fam190b|Gcap14	coiled-coil serine rich 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-61369031-3	chr9	61368926	61369126	+	908.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3340.0	NM_001083928	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-50448464-2	chr12	50448364	50448564	+	652.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008858, intron 2 of 18)	intron (NM_008858, intron 2 of 18)	200759.0	NM_008858	18760.0	Mm.133719	NM_008858	ENSMUSG00000002688	Prkd1	PKD|PKD1|Pkcm|Prkcm	protein kinase D1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-121997017-4	chr14	121996919	121997119	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026861, intron 7 of 8)	intron (NM_026861, intron 7 of 8)	-31826.0	NM_183031	321019.0	Mm.265618	NM_183031	ENSMUSG00000051212	Gpr183	Ebi2	G protein-coupled receptor 183	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-80152726-2	chr18	80152626	80152826	+	819.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1244.0	NM_175028	240442.0	Mm.26594	NM_175028	ENSMUSG00000053950	Adnp2	8430420L05Rik|BC024969|Kiaa0863|Zfp508|mKIAA0863	ADNP homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-55455181-2	chr11	55455081	55455281	+	808.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009720, intron 1 of 3)	intron (NM_009720, intron 1 of 3)	6027.0	NM_009720	11927.0	Mm.217759	NM_009720	ENSMUSG00000018585	Atox1	AI256639|Atx1	antioxidant 1 copper chaperone	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-137968404-2	chr4	137968297	137968497	+	768.833374	f0_c57.idr|f1_balb.idr	Intergenic	Intergenic	-25059.0	NM_001256198	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	3.15459699637713	3.58716898596996	3.35228094354007	4.38393803501823	4.15944375387666	5.77239601574714	2.04086817826591	3.71333861508352	1.06810131715151	0.295677847857045	0.7986401962885
Merged-chr11-69764697-2	chr11	69764598	69764798	+	847.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-1214.0	NM_029348	75580.0	Mm.426361	NM_029348	ENSMUSG00000018750	Zbtb4	2310026P19Rik|9230111I22Rik|mKIAA1538	zinc finger and BTB domain containing 4	protein-coding	2.22984389841442	2.93672228290872	1.91767736134408	2.24960799746517	1.78636256881153	2.15568709551389	1.29782443862174	2.26142367337769	-1.11806694873847	0.234921083485665	0.731086761108682
Merged-chr7-98817524-2	chr7	98817424	98817624	+	939.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17588.0	NM_001285794	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-21826084-4	chr10	21825978	21826178	+	768.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56106.0	NM_001161845	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117793633-2	chr10	117793533	117793733	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134010)	promoter-TSS (NM_134010)	-928.0	NM_134010	103468.0	Mm.12568	NM_134010	ENSMUSG00000052798	Nup107	AW541137|C76801	nucleoporin 107	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-84802271-2	chr2	84802171	84802371	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019949, intron 1 of 3)	intron (NM_019949, intron 1 of 3)	3443.0	NM_019949	56791.0	Mm.38261	NM_019949	ENSMUSG00000027078	Ube2l6	2810489I21Rik|RIG-B|UBCH8|Ubce8|Ubcm8	ubiquitin-conjugating enzyme E2L 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-51545412-4	chr6	51545299	51545499	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361577, intron 1 of 6)	intron (NM_001361577, intron 1 of 6)	106.0	NM_001361577	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-14372774-2	chr16	14372674	14372874	+	723.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008576, intron 1 of 30)	intron (NM_008576, intron 1 of 30)	11216.0	NM_008576	17250.0	Mm.196634	NM_008576	ENSMUSG00000023088	Abcc1	Abcc1a|Abcc1b|MRP|Mdrap|Mrp1	ATP-binding cassette, sub-family C (CFTR/MRP), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-16855244-3	chr6	16855151	16855351	+	943.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031198, intron 2 of 6)	intron (NM_031198, intron 2 of 6)	43190.0	NM_031198	21426.0	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-30942423-2	chr14	30942323	30942523	+	770.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008406, intron 3 of 21)	intron (NM_008406, intron 3 of 21)	866.0	NM_008406	16424.0	Mm.3227	NM_008406	ENSMUSG00000006529	Itih1	ITI-HC1|Intin1|Itih-1	inter-alpha trypsin inhibitor, heavy chain 1	protein-coding	0.561900591167959	1.36241243679189	0.40888727368192	0.400353672538294	0.963537642246905	0.422212248691211	1.40370987664757	0.401852859055332	0.485164111739672	0.783702191320409	0.998431161219273
Merged-chr18-84355445-4	chr18	84355342	84355542	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033341, intron 4 of 8)	intron (NM_001033341, intron 4 of 8)	234062.0	NM_001033341	240476.0	Mm.329575	NM_001033341	ENSMUSG00000048410	Zfp407	6430585N13Rik|Gm333|Gm334|Gm948|ZNF407	zinc finger protein 407	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-99578908-4	chr5	99578805	99579005	+	940.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 1 of 3)	intron (NR_030692, intron 1 of 3)	150155.0	NR_030692	319818.0	Mm.295233	NR_030692	ENSMUSG00000089809	A930011G23Rik	-	RIKEN cDNA A930011G23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127535979-4	chr10	127535883	127536083	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1424.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	2.68298971246073	1.45730894460304	2.05240938674191	2.20249192047678	1.65762816511826	1.85582848699167	1.9403700444592	1.15796697909669	-1.34266173996084	0.195793060818713	0.676981309424473
Merged-chr11-48827277-2	chr11	48827177	48827377	+	604.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_053166, intron 1 of 6)	intron (NM_053166, intron 1 of 6)	1139.0	NM_053166	94089.0	Mm.390335	NM_053166	ENSMUSG00000040350	Trim7	AI790312	tripartite motif-containing 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139367072-2	chr5	139366972	139367172	+	760.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028469, intron 2 of 4)	B3|SINE|B2	2673.0	NR_029768	723898.0		NR_029768	ENSMUSG00000065593	Mir339	Mirn339|mir-339|mmu-mir-339	microRNA 339	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-21500673-4	chr14	21500576	21500776	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017479, intron 1 of 16)	CpG	891.0	NM_017479	54169.0	Mm.248967	NM_017479	ENSMUSG00000021767	Kat6b	AI507552|B130044K16Rik|MYST-4|Morf|Myst4|mKIAA0383|qkf|querkopf	K(lysine) acetyltransferase 6B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-66850465-2	chr10	66850365	66850565	+	822.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER20|DNA|hAT-Charlie	69919.0	NR_138560	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-109933287-2	chr9	109933187	109933387	+	949.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205332, intron 1 of 17)	intron (NM_001205332, intron 1 of 17)	1513.0	NM_008633	17758.0	Mm.217318	NM_008633	ENSMUSG00000032479	Map4	AA407148|MAP-4|Mtap-4|Mtap4	microtubule-associated protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-169703158-4	chr2	169703040	169703240	+	923.866699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080455, intron 1 of 1)	B1F|SINE|Alu	69494.0	NM_080455	228911.0	Mm.315789	NM_080455	ENSMUSG00000047907	Tshz2	2900073F20Rik|B830045G17|Mtsh2|Sdccag33l|Tsh2|Zfp218|mKIAA4248|teashirt2	teashirt zinc finger family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-143628081-4	chr7	143627967	143628167	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175649)	promoter-TSS (NM_175649)	-3.0	NR_153818	414103.0	Mm.446579	NR_153817		E230032D23Rik	-	RIKEN cDNA E230032D23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-65187635-1	chr3	65187535	65187735	+	547.0	f1_balb.idr	promoter-TSS (NM_001289450)	promoter-TSS (NM_001289450)	-468.0	NM_001289450	16497.0	Mm.316402	NM_010597	ENSMUSG00000027827	Kcnab1	Akr8a8|Kvbeta1.1|mKv(beta)1	potassium voltage-gated channel, shaker-related subfamily, beta member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-113306614-4	chr6	113306540	113306740	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001282126)	promoter-TSS (NM_001282126)	-497.0	NM_030178	78783.0	Mm.356059	NM_030178	ENSMUSG00000001632	Brpf1	4833438B11Rik|4930540D11Rik|Brpf2	bromodomain and PHD finger containing, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-59330746-2	chr11	59330646	59330846	+	570.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_139298, intron 3 of 3)	intron (NM_139298, intron 3 of 3)	23816.0	NM_139298	216795.0	Mm.218794	NM_139298	ENSMUSG00000000126	Wnt9a	Wnt14	wingless-type MMTV integration site family, member 9A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-76324820-3	chr12	76324724	76324924	+	960.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001101471)	promoter-TSS (NM_001101471)	-67.0	NM_001101471	238276.0	Mm.311452	NM_001101471	ENSMUSG00000021057	Akap5	3526401B18Rik|AKAP 150|AKAP-5|AKAP150|BB098886|Gm258|P150	A kinase (PRKA) anchor protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-25483119-2	chr2	25483019	25483219	+	726.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10792.0	NM_029958	77701.0	Mm.99123	NM_029958	ENSMUSG00000026943	Lcn12	9230102M18Rik	lipocalin 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-155391704-4	chr1	155391611	155391811	+	882.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011273, intron 1 of 14)	MTEa|LTR|ERVL-MaLR	25733.0	NM_011273	19775.0	Mm.266215	NM_011273	ENSMUSG00000026469	Xpr1	Rmc-1|Rmc1|Sxv|Syg1|XR	xenotropic and polytropic retrovirus receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-5870516-4	chr13	5870419	5870619	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011803)	TTS (NM_011803)	9030.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-106003285-4	chr2	106003178	106003378	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033993, exon 1 of 4)	non-coding (NR_033993, exon 1 of 4)	271.0	NM_026992	99349.0	Mm.25661	NM_026992	ENSMUSG00000027166	Dnajc24	1700030A21Rik|2610027M02Rik|AV066965|AW240712|Dph4|MmDjC7|Zcsl3	DnaJ heat shock protein family (Hsp40) member C24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-38982304-4	chr6	38982205	38982405	+	987.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 4 of 12)	MTD|LTR|ERVL-MaLR	63319.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119441891-1	chr11	119441791	119441991	+	621.0	f1_c57bl6.idr	Intergenic	Intergenic	49344.0	NR_153849	78439.0	Mm.440446	NR_153849	ENSMUSG00000109408	A930037H05Rik	Gm44935	RIKEN cDNA A930037H05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-43607233-1	chr19	43607133	43607333	+	782.0	f1_balb.idr	Intergenic	Intergenic	-5092.0	NM_008699	18089.0	Mm.56994	NM_008699	ENSMUSG00000044220	Nkx2-3	Nkx-2.3|Nkx2.3|tinman	NK2 homeobox 3	protein-coding	2.35643743099806	1.12826647103429	3.03704508633987	1.05872865430354	1.48413223102628	3.03597860229617	2.50516482899659	1.06429039217289	0.190076940683896	0.921241814175693	0.998431161219273
Merged-chr16-11323519-4	chr16	11323424	11323624	+	864.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028964, intron 1 of 20)	intron (NM_028964, intron 1 of 20)	620.0	NM_028964	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-64304217-4	chr1	64304130	64304330	+	872.7333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-182841.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80696581-1	chr7	80696481	80696681	+	669.0	f0_c57.idr	Intergenic	C-rich|Low_complexity|Low_complexity	-7704.0	NM_173863	70461.0	Mm.392175	NM_173863	ENSMUSG00000030527	Crtc3	2610312F20Rik|6332415K15Rik|AI429792|BC011210|TORC3	CREB regulated transcription coactivator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-100208488-2	chr6	100208388	100208588	+	587.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	78870.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-24150444-1	chr18	24150344	24150544	+	668.0	f0_balb.idr	Intergenic	Intergenic	-28625.0	NM_172625	225280.0	Mm.258973	NM_172625	ENSMUSG00000047989	Ino80c	D030070L09Rik	INO80 complex subunit C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-41319218-3	chr8	41319146	41319346	+	734.388855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023662, intron 29 of 37)	intron (NM_023662, intron 29 of 37)	55451.0	NM_019734	11886.0	Mm.22547	NM_019734	ENSMUSG00000031591	Asah1	2310081N20Rik|AC|Asah	N-acylsphingosine amidohydrolase 1	protein-coding	2.24014226572736	2.26599069563201	1.96697380147132	2.29215313868408	1.04142264702513	1.11874255176181	1.53977054204816	1.49396302168869	-2.88840718398916	0.0115456917302266	0.12038691429252
Merged-chr5-151367841-2	chr5	151367741	151367941	+	738.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045699)	promoter-TSS (NR_045699)	-834.0	NR_045700	625175.0	Mm.443286	NR_045699	ENSMUSG00000097321	1700028E10Rik	A630054D14|Gm6561	RIKEN cDNA 1700028E10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-47445570-3	chr14	47445471	47445671	+	848.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26990.0	NR_027414	78938.0	Mm.11935	NM_030236	ENSMUSG00000037536	Fbxo34	2900057B08Rik|5830426G16Rik	F-box protein 34	protein-coding	1.70203302156663	2.25624733878845	2.74173700059604	1.33480510507399	3.066039258084	2.5448301901658	2.19619845505658	2.58697578193265	1.11332910143388	0.215738036487632	0.706180188649098
Merged-chr11-121804840-1	chr11	121804740	121804940	+	1000.0	f0_balb.idr	Intergenic	Intergenic	-25378.0	NM_029049	74675.0	Mm.61213	NM_029049	ENSMUSG00000039198	Ptchd3	4930451E13Rik|4933440L20Rik|RNDEu-3	patched domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-109531035-2	chr12	109530935	109531135	+	835.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9961.0	NR_027652	17263.0	Mm.289645	NM_144513	ENSMUSG00000021268	Meg3	2900016C05Rik|3110050O07Rik|6330408G06Rik|AI425946|AW108224|D12Bwg1266e|Gtl2|R74756|R75394	maternally expressed 3	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80737508-2	chr10	80737408	80737608	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007460, intron 1 of 30)	MLT1D|LTR|ERVL-MaLR	4767.0	NM_007460	11776.0	Mm.27082	NM_007460	ENSMUSG00000020198	Ap3d1	AA407035|Ap3d|Bolvr|mBLVR1|mh|mocha	adaptor-related protein complex 3, delta 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141662506-2	chr4	141662406	141662606	+	862.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347237, intron 1 of 18)	intron (NM_001347237, intron 1 of 18)	1609.0	NM_001347237	69582.0	Mm.33220	NM_001033150	ENSMUSG00000028917	Plekhm2	2310034J19Rik|AI854247|mKIAA0842	pleckstrin homology domain containing, family M (with RUN domain) member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-12313667-4	chr12	12313585	12313785	+	844.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146119, intron 2 of 11)	intron (NM_001146119, intron 2 of 11)	51546.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	2.92560453008052	2.92732346216666	2.50279175377127	2.75506741070254	2.9487564719931	2.46417757065689	2.23076367332766	2.4468303840664	-0.465775950133624	0.520395079433439	0.947641799425091
Merged-chr5-86066324-3	chr5	86066225	86066425	+	847.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007683)	promoter-TSS (NM_007683)	-742.0	NM_007683	12617.0	Mm.4649	NM_007683	ENSMUSG00000029253	Cenpc1	CENP-C|Cenpc	centromere protein C1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-5444975-4	chr11	5444864	5445064	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080924)	promoter-TSS (NM_001080924)	-117.0	NM_001080924	407821.0	Mm.216313	NM_001080924	ENSMUSG00000041961	Znrf3	Gm1167	zinc and ring finger 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-24385102-6	chr2	24385072	24385272	+	909.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177611)	promoter-TSS (NM_177611)	-160.0	NM_177611	215632.0	Mm.490434	NM_177611	ENSMUSG00000026979	Psd4	BC046518|EFA6B	pleckstrin and Sec7 domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-120480557-2	chr5	120480457	120480657	+	808.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_145565, intron 3 of 7)	intron (NM_145565, intron 3 of 7)	4010.0	NM_145565	231691.0	Mm.28685	NM_145565	ENSMUSG00000029597	Sds	4432411H13Rik|SDH	serine dehydratase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55678673-2	chr14	55678573	55678773	+	615.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_177992)	TTS (NM_177992)	3144.0	NM_145705	28113.0	Mm.29346	NM_145705	ENSMUSG00000007589	Tinf2	AW552114|D14Wsu146e|Tin2	Terf1 (TRF1)-interacting nuclear factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166710066-4	chr2	166709961	166710161	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	3771.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-86688594-2	chr18	86688494	86688694	+	764.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-22467.0	NM_001302356	12405.0	Mm.70775	NM_172633	ENSMUSG00000024647	Cbln2	6330593N19Rik|A730004O05	cerebellin 2 precursor protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-41684790-3	chr10	41684689	41684889	+	876.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358562, intron 4 of 47)	intron (NM_001358562, intron 4 of 47)	31674.0	NM_001358562	75973.0	Mm.228517	NM_029493	ENSMUSG00000075225	Ccdc162	5033413D22Rik|Ccdc162p|Gm29096|Gm61|Gm6976	coiled-coil domain containing 162	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-11452781-4	chr8	11452680	11452880	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25149.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-30650909-4	chr5	30650785	30650985	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175675, intron 1 of 5)	intron (NM_175675, intron 1 of 5)	2946.0	NM_175675	74919.0	Mm.247985	NM_175675	ENSMUSG00000029175	Slc35f6	4930471M23Rik|5730478O19Rik|ANT2BP|P40|Tango9	solute carrier family 35, member F6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-44266663-4	chr12	44266562	44266762	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2492.0	NM_026164	67452.0	Mm.54126	NM_026164	ENSMUSG00000036257	Pnpla8	1200006O19Rik|AI467579|Ipla2(gamma)	patatin-like phospholipase domain containing 8	protein-coding	3.77437810745985	4.40160382495929	4.59930358128876	3.12267944376303	4.03030312954369	4.89417502457022	3.91217991515426	3.71679440649241	0.173587673174876	0.730401119214193	0.998431161219273
Merged-chr16-55892637-4	chr16	55892550	55892750	+	737.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001134457, intron 1 of 5)	intron (NM_001134457, intron 1 of 5)	2629.0	NM_001134457	385658.0	Mm.310635	NM_001134457	ENSMUSG00000075033	Nxpe3	Fam55c|Gm1752|Gm611	neurexophilin and PC-esterase domain family, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-53454430-2	chr11	53454330	53454530	+	648.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-2775.0	NM_001290789	71774.0	Mm.274370	NM_027917	ENSMUSG00000018387	Shroom1	Apx|Shrm1	shroom family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-125144393-4	chr4	125144304	125144504	+	932.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16523.0	NM_153159	230738.0	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-34277903-3	chr6	34277811	34278011	+	694.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39532.0	NR_037965	626009.0	Mm.451	NR_028277		Gm6644	Akr1b3p|EG626009	Akr1b3 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-117926800-1	chr6	117926700	117926900	+	547.0	f1_balb.idr	Intergenic	B2_Mm2|SINE|B2	9506.0	NM_001166427	98758.0	Mm.422979	NM_133834	ENSMUSG00000042079	Hnrnpf	4833420I20Rik|AA407306|Hnrpf	heterogeneous nuclear ribonucleoprotein F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-120580870-2	chr9	120580770	120580970	+	579.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3539.0	NR_073359	76100.0	Mm.48212	NR_073359	ENSMUSG00000052658	5830454E08Rik	-	RIKEN cDNA 5830454E08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-143853619-2	chr2	143853519	143853719	+	699.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291061, intron 2 of 7)	LTR16E1|LTR|ERVL	9554.0	NM_009751	12075.0	Mm.275937	NM_009751	ENSMUSG00000027420	Bfsp1	CP95	beaded filament structural protein 1, in lens-CP94	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-12571389-2	chr6	12571289	12571489	+	663.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164805, intron 1 of 26)	intron (NM_001164805, intron 1 of 26)	177864.0	NM_001164805	330267.0	Mm.11989	NM_001164805	ENSMUSG00000032625	Thsd7a	Gm837	thrombospondin, type I, domain containing 7A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-102250230-3	chr7	102250145	102250345	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019566)	promoter-TSS (NM_019566)	-127.0	NM_019566	56212.0	Mm.259795	NM_019566	ENSMUSG00000073982	Rhog	2810426G09Rik|Arhg|Sid10750	ras homolog family member G	protein-coding	2.54410440835249	2.7798451807589	2.06457576129357	2.00650950933241	2.14775701191131	1.59614189702883	1.29904393410083	2.3611640624584	-1.1092189181206	0.246007521097838	0.74533266026342
Merged-chr11-120957959-4	chr11	120957853	120958053	+	999.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_030696, exon 6 of 6)	exon (NM_030696, exon 6 of 6)	8886.0	NM_001038654	80879.0	Mm.28632	NM_030696	ENSMUSG00000025161	Slc16a3	Mct3|Mct4	solute carrier family 16 (monocarboxylic acid transporters), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-122107052-4	chr14	122106976	122107176	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015586)	promoter-TSS (NR_015586)	-6.0	NM_080556	68059.0	Mm.275191	NM_080556	ENSMUSG00000025544	Tm9sf2	1500001N15Rik|AA536814|D14Ertd64e|P76	transmembrane 9 superfamily member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-11559475-1	chr11	11559375	11559575	+	618.0	f0_balb.idr	Intergenic	Intergenic	68363.0	NM_001305143	102631730.0	Mm.159430	NM_001305143	ENSMUSG00000062511	4930512M02Rik	-	RIKEN cDNA 4930512M02 gene	protein-coding	0.881949272660484	1.02673408611536	0.499204468702055	1.33260191539351	0.99548046527971	0.71846347573828	0.501172861590051	0.49350342170218	-1.45246532855345	0.381048405244833	1
Merged-chr11-78095109-1	chr11	78095009	78095209	+	544.0	f0_balb.idr	intron (NM_145430, intron 1 of 2)	intron (NM_145430, intron 1 of 2)	436.0	NM_145430	216971.0	Mm.119387	NM_145430	ENSMUSG00000037750	Fam222b	9630020I17Rik	family with sequence similarity 222, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111892209-2	chr12	111892109	111892309	+	564.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011625, intron 1 of 16)	RMER1A|Other|Other	15846.0	NM_011625	21981.0	Mm.313076	NM_011625	ENSMUSG00000021285	Ppp1r13b	AI449786|ASPP1|AW545810|Tp53bp2|Trp53bp2|p85	protein phosphatase 1, regulatory (inhibitor) subunit 13B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-137753109-3	chr3	137753006	137753206	+	883.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30509.0	NR_105801	102466638.0		NR_105801	ENSMUSG00000099011	Mir6380	Gm27356|mmu-mir-6380	microRNA 6380	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-55371136-2	chr13	55371036	55371236	+	646.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360714, intron 1 of 14)	intron (NM_001360714, intron 1 of 14)	1404.0	NM_016758	51791.0	Mm.1426	NM_016758	ENSMUSG00000052087	Rgs14	RPIP1	regulator of G-protein signaling 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-98804313-4	chr15	98804250	98804450	+	816.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001013741, exon 2 of 2)	3' UTR (NM_001013741, exon 2 of 2)	3575.0	NM_001013741	13199.0	Mm.390810	NM_001013741	ENSMUSG00000059213	Ddn	Gm748	dendrin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132801621-2	chr4	132801521	132801721	+	839.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5257.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-116040262-3	chr7	116040144	116040344	+	911.488892	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1500.0	NM_001025559	20679.0	Mm.323365	NM_011445	ENSMUSG00000051910	Sox6	AI987981|SOX-LZ	SRY (sex determining region Y)-box 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-92972188-4	chr1	92972100	92972300	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001104529)	promoter-TSS (NM_001104529)	-919.0	NM_001104529	64095.0	Mm.152780	NM_022320	ENSMUSG00000026271	Gpr35	KPG_007	G protein-coupled receptor 35	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-62789321-3	chr11	62789204	62789404	+	866.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138949, intron 1 of 5)	intron (NM_138949, intron 1 of 5)	113.0	NM_138949	192651.0	Mm.168530	NM_138949	ENSMUSG00000047342	Zfp286	BC027023	zinc finger protein 286	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-35336530-3	chr12	35336431	35336631	+	694.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	-141634.0	NR_030449	751520.0		NR_030449	ENSMUSG00000076253	Mir680-3	Mirn680-3	microRNA 680-3	ncRNA	2.84272444981839	1.61627266909619	3.28050692694765	2.79422093101982	2.54528125134352	4.3503409272481	2.90539782582655	3.43154300384536	1.19006889060312	0.108721309544002	0.516409525453966
Merged-chr1-183510950-4	chr1	183510844	183511044	+	949.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	91696.0	NM_001308052	78772.0	Mm.29003	NM_030175	ENSMUSG00000053461	Hhipl2	4930507C10Rik|AW208802|Hhip3	hedgehog interacting protein-like 2	protein-coding	3.36839988214202	3.97092412151159	4.49956599427989	3.72749658830349	4.56582051879036	3.99998965204634	4.4336247798685	4.90099925741777	0.752541344557992	0.0923422821439862	0.470077818980346
Merged-chr13-104286499-3	chr13	104286398	104286598	+	739.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1337.0	NR_136938	108154.0	Mm.208125	NM_175496	ENSMUSG00000046169	Adamts6	A930019D11Rik|ADAM-TS6|b2b1879.1Clo|b2b2029Clo|b2b2182Clo|b2b2187.1Clo|b2b2228Clo	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-66818393-4	chr15	66818212	66818412	+	980.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009192, intron 1 of 8)	intron (NM_009192, intron 1 of 8)	13517.0	NM_001029841	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-38576188-4	chr18	38576078	38576278	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25090.0	NM_011898	24066.0	Mm.42038	NM_011898	ENSMUSG00000024427	Spry4	A030006O18Rik|sprouty4	sprouty RTK signaling antagonist 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-128662393-1	chr6	128662293	128662493	+	629.0	f0_balb.idr	promoter-TSS (NM_053165)	promoter-TSS (NM_053165)	8.0	NM_053165	94071.0	Mm.197689	NM_053165	ENSMUSG00000030364	Clec2h	Clrf|clr-f	C-type lectin domain family 2, member h	protein-coding	-0.512917928993994	-0.504884968877248	-0.118820179804498	-0.249641671400036	-0.512425255841726	-0.50427991119301	-0.221340357109163	-0.509229601841208	-1.21066756012891	0.650959834673524	1
Merged-chr2-180698295-2	chr2	180698195	180698395	+	773.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291432, intron 1 of 5)	intron (NM_001291432, intron 1 of 5)	3807.0	NM_011805	23856.0	Mm.253836	NM_011805	ENSMUSG00000038914	Dido1	6720461J16Rik|D130048F08Rik|DATF-1|DIO-1|Datf1|dido	death inducer-obliterator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-113377856-6	chr6	113377771	113377971	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133932)	promoter-TSS (NM_133932)	-242.0	NM_026552	68089.0	Mm.289306	NM_026552	ENSMUSG00000079426	Arpc4	20kDa|5330419I20Rik|AI327076|p20-Arc	actin related protein 2/3 complex, subunit 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-34973789-1	chr13	34973689	34973889	+	552.0	f1_balb.idr	Intergenic	MT2A|LTR|ERVL	-9980.0	NM_026947	69123.0	Mm.482475	NM_026947	ENSMUSG00000021416	Eci3	1810022C23Rik|Kseg2	enoyl-Coenzyme A delta isomerase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-87107899-2	chr7	87107799	87107999	+	658.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	111434.0	NM_001105190	621430.0	Mm.469903	NM_001105190	ENSMUSG00000090362	Vmn2r79	EG621430	vomeronasal 2, receptor 79	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-108369413-4	chr4	108369316	108369516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001099303, intron 2 of 2)	intron (NM_001099303, intron 2 of 2)	14239.0	NM_001099303	545667.0	Mm.380025	NM_001099303	ENSMUSG00000059816	Fam159a	Shisal2a	family with sequence similarity 159, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-31188421-2	chr5	31188321	31188521	+	718.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001127356, intron 10 of 11)	B2_Mm2|SINE|B2	4718.0	NM_001127355	13667.0	Mm.29394	NM_010122	ENSMUSG00000029145	Eif2b4	Eif2b	eukaryotic translation initiation factor 2B, subunit 4 delta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-21782460-2	chr19	21782360	21782560	+	548.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_031997, intron 2 of 24)	intron (NM_031997, intron 2 of 24)	4120.0	NM_031997	83921.0	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55751813-3	chr19	55751686	55751886	+	699.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_138565, intron 3 of 15)	intron (NR_138565, intron 3 of 15)	9976.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	-0.974268880287452	-0.959094033788465	-0.801050616630342	-0.682820494844873	-0.973806545627183	-0.956643149479072	-0.967843555357914	-0.678660317991399	-0.527947295487393	0.859716567603561	1
Merged-chr6-57706879-2	chr6	57706779	57706979	+	744.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_133737, intron 1 of 8)	intron (NM_133737, intron 1 of 8)	4424.0	NM_133737	71835.0	Mm.274904	NM_133737	ENSMUSG00000062190	Lancl2	1700003F10Rik	LanC (bacterial lantibiotic synthetase component C)-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-25222905-4	chr5	25222847	25223047	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144908)	promoter-TSS (NM_144908)	75.0	NM_144908	231050.0	Mm.246718	NM_144908	ENSMUSG00000038072	Galnt11	A430075I06Rik|AI648252|E430002F06Rik	polypeptide N-acetylgalactosaminyltransferase 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-100168802-4	chr12	100168714	100168914	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9161.0	NM_183155	217827.0	Mm.224076	NM_183155	ENSMUSG00000021179	Nrde2	6720454P05Rik	nrde-2 necessary for RNA interference, domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-45196693-4	chr2	45196587	45196787	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-79245.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-92056225-4	chr2	92056120	92056320	+	831.891663	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32050.0	NM_011957	26427.0	Mm.10353	NM_011957	ENSMUSG00000027230	Creb3l1	Oasis	cAMP responsive element binding protein 3-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52624276-4	chr13	52624169	52624369	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011518, intron 6 of 13)	intron (NM_011518, intron 6 of 13)	27387.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-108897610-1	chr8	108897510	108897710	+	541.0	f1_balb.idr	intron (NM_007496, intron 4 of 9)	intron (NM_007496, intron 4 of 9)	-39250.0	NR_037295	100526511.0		NR_037295	ENSMUSG00000093241	Mir3108	mir-3108|mmu-mir-3108	microRNA 3108	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-13758571-3	chr8	13758437	13758637	+	932.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357247, intron 1 of 16)	intron (NM_001357247, intron 1 of 16)	881.0	NM_001357247	69957.0	Mm.182412	NM_027276	ENSMUSG00000038416	Cdc16	2700071J12Rik|2810431D22Rik|APC6	CDC16 cell division cycle 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-77315452-4	chr16	77315353	77315553	+	806.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	HAL1|LINE|L1	-13875.0	NR_015543	77994.0	Mm.394688	NR_015543	ENSMUSG00000090386	Mir99ahg	2810055G20Rik|D730043B02Rik	Mir99a and Mirlet7c-1 host gene (non-protein coding)	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-124425688-4	chr9	124425566	124425766	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_027950)	TTS (NR_027950)	1879.0	NR_015516	75135.0	Mm.476814	NR_015516		4930526I15Rik	1600027J15Rik	RIKEN cDNA 4930526I15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-9129835-2	chr15	9129735	9129935	+	837.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_013787, intron 2 of 9)	intron (NM_013787, intron 2 of 9)	10619.0	NM_013787	27401.0	Mm.35584	NM_013787	ENSMUSG00000054115	Skp2	4930500A04Rik|FBXL1|FWD1|p45	S-phase kinase-associated protein 2 (p45)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-139196700-4	chr4	139196590	139196790	+	922.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	2579.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	1.38798584783197	1.1992395382738	1.51756633348067	0.98469292462571	1.20392764946664	1.03803022620746	1.01138032159898	1.26437759624514	-0.695527197309916	0.581619987145773	0.966599221005409
Merged-chr7-82866264-4	chr7	82866180	82866380	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1053.0	NM_175366	108797.0	Mm.306789	NM_175366	ENSMUSG00000057706	Mex3b	4931439A04Rik|M-04814|Rkhd3|mKIAA2009	mex3 RNA binding family member B	protein-coding	5.42713953537983	5.31041007788066	5.31532551201202	5.06105115240169	4.76444554187309	5.30934280336337	5.00771356942741	3.96149407509936	-0.533729674188944	0.120920211280939	0.545687322573484
Merged-chr12-86082972-2	chr12	86082872	86083072	+	986.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_029601, intron 1 of 7)	intron (NM_029601, intron 1 of 7)	411.0	NM_001199843	76411.0	Mm.292345	NM_029601	ENSMUSG00000007867	Ift43	1700019E19Rik|R75064	intraflagellar transport 43	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-72203810-3	chr2	72203757	72203957	+	819.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355478, intron 11 of 26)	intron (NM_001355478, intron 11 of 26)	-81780.0	NM_023057	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	2.38468650867458	2.41354870039654	1.42208890655532	2.73406660409322	2.47861662603282	1.47819699785253	1.17075839938782	1.39170477875126	-1.35556612202612	0.203239001753201	0.689610164885438
Merged-chr17-5591788-4	chr17	5591692	5591892	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	99192.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-50803311-2	chr18	50803211	50803411	+	948.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus4|LINE|L1	-234612.0	NM_026108	67365.0	Mm.158150	NM_026108	ENSMUSG00000048875	Pudp	1700121L12Rik|GS1|Hdhd1|Hdhd1a	pseudouridine 5-phosphatase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-15759447-2	chr6	15759347	15759547	+	776.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_175088, intron 3 of 4)	intron (NM_175088, intron 3 of 4)	38786.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-24348182-4	chr16	24348036	24348236	+	996.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45214.0	NM_178665	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-109298184-4	chr11	109298055	109298255	+	943.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011268)	promoter-TSS (NM_011268)	26.0	NM_001165934	19739.0	Mm.38548	NM_011268	ENSMUSG00000020599	Rgs9	RGS9-1|Rgs9-2	regulator of G-protein signaling 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-64022086-4	chr9	64021989	64022189	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008542)	promoter-TSS (NM_008542)	-30.0	NM_008542	17130.0	Mm.325757	NM_008542	ENSMUSG00000036867	Smad6	Madh6|b2b390Clo	SMAD family member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97379557-3	chr6	97379462	97379662	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 6 of 23)	intron (NM_145148, intron 6 of 23)	79724.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-30529797-2	chr15	30529697	30529897	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355502, intron 3 of 21)	intron (NM_001355502, intron 3 of 21)	357204.0	NM_008729	18163.0	Mm.321648	NM_008729	ENSMUSG00000022240	Ctnnd2	Catnd2|Nprap|neurojugin	catenin (cadherin associated protein), delta 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-50235362-2	chr11	50235262	50235462	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_145926)	TTS (NM_145926)	3117.0	NR_105884	102466765.0		NR_105884	ENSMUSG00000098474	Mir6919	Gm27889|mmu-mir-6919	microRNA 6919	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-26849365-2	chr8	26849265	26849465	+	611.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24942.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-44764718-1	chr16	44764618	44764818	+	681.0	f0_balb.idr	Intergenic	Intergenic	-1018.0	NM_021325	57781.0	Mm.416152	NM_021325	ENSMUSG00000022667	Cd200r1	CD200R|Mox2r|OX2R	CD200 receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-39002646-1	chr6	39002546	39002746	+	587.5	f0_balb.idr	intron (NM_011539, intron 5 of 12)	intron (NM_011539, intron 5 of 12)	64940.0	NR_040523	69986.0	Mm.490941	NR_040523	ENSMUSG00000100121	1700025N23Rik	-	RIKEN cDNA 1700025N23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-53673775-3	chr9	53673671	53673871	+	788.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6264.0	NM_027807	75717.0	Mm.218910	NM_027807	ENSMUSG00000032030	Cul5	4921514I20Rik|8430423K24Rik|AI852817|C030032G03Rik|C330021I08Rik|VACM-1|VACM1	cullin 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-4148061-2	chr7	4147961	4148161	+	552.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_175529)	TTS (NM_175529)	1811.0	NM_175529	243813.0	Mm.347643	NM_175529	ENSMUSG00000043432	Leng9	9530024C23Rik|F630035L11Rik	leukocyte receptor cluster (LRC) member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-100037922-2	chr5	100037822	100038022	+	600.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_016690, exon 2 of 8)	exon (NM_016690, exon 2 of 8)	1300.0	NM_016690	50926.0	Mm.389579	NM_016690	ENSMUSG00000029328	Hnrnpdl	AA407431|AA959857|D5Ertd650e|D5Wsu145e|Hnrnpdl1|Hnrpdl|JKTBP|hnRNP DL|hnRNP-DL	heterogeneous nuclear ribonucleoprotein D-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-94557635-4	chr15	94557553	94557753	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029926, intron 6 of 11)	intron (NM_029926, intron 6 of 11)	13993.0	NM_029926	266632.0	Mm.422858	NM_029926	ENSMUSG00000059883	Irak4	8430405M07Rik|9330209D03Rik|IRAK-4|NY-REN-64	interleukin-1 receptor-associated kinase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28867822-4	chr7	28867705	28867905	+	946.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3419.0	NM_008496	16858.0	Mm.20973	NM_008496	ENSMUSG00000053522	Lgals7	Galectin-7|Pig1	lectin, galactose binding, soluble 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-15065172-2	chr17	15065072	15065272	+	608.125	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001034891)	TTS (NM_001034891)	12113.0	NM_001034891	381062.0	Mm.393767	NM_183133	ENSMUSG00000036552	Ermard	2210404J11Rik|2410011O22Rik|AI448938	ER membrane associated RNA degradation	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125094594-2	chr6	125094494	125094694	+	851.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1387.0	NM_001346610	107932.0	Mm.333388	NM_145979	ENSMUSG00000063870	Chd4	9530019N15Rik|AA617397|BC005710|D6Ertd380e|Mi-2beta|mKIAA4075	chromodomain helicase DNA binding protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-43664627-2	chr7	43664527	43664727	+	985.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-4466.0	NM_031181	83382.0	Mm.157702	NM_031181	ENSMUSG00000030474	Siglece	Cd170|Siglec12|Siglec5|Siglec9|Siglecl1|mSiglec-E	sialic acid binding Ig-like lectin E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-62650537-2	chr10	62650437	62650637	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358820)	promoter-TSS (NM_001358820)	681.0	NM_001358819	94213.0	Mm.114116	NM_053183	ENSMUSG00000020076	Ddx50	4933429B04Rik|8430408E17Rik|GU2|RH-II	DEAD (Asp-Glu-Ala-Asp) box polypeptide 50	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-85195275-4	chr3	85195194	85195394	+	920.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6B|LTR|ERVK	-122225.0	NR_040542	73283.0	Mm.489084	NR_040542	ENSMUSG00000099995	1700036G14Rik	-	RIKEN cDNA 1700036G14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-38783651-2	chr12	38783551	38783751	+	549.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163154)	promoter-TSS (NM_001163154)	-60.0	NM_001163154	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-98387802-4	chr15	98387709	98387909	+	870.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR17|LTR|ERVK	-8701.0	NM_147036	259038.0	Mm.377802	NM_147036	ENSMUSG00000056184	Olfr283	MOR160-1	olfactory receptor 283	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-75455507-2	chr18	75455407	75455607	+	869.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_201354, intron 10 of 11)	intron (NM_201354, intron 10 of 11)	-59138.0	NR_045879	100038353.0	Mm.440724	NR_045879	ENSMUSG00000097712	Gm10532	-	predicted gene 10532	ncRNA	-0.930827705715312	-0.911723555512999	-0.922254349429052	-0.92545661009902	-0.930024306940492	-0.908568608235052	-0.921343426646148	0.0793975079163189	3.42135586619611	0.266698239593473	1
Merged-chr3-68952219-3	chr3	68952064	68952264	+	871.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026641, intron 8 of 19)	RLTR45|LTR|ERVK	52406.0	NM_026641	68259.0	Mm.389451	NM_026641	ENSMUSG00000027778	Ift80	4921524P20Rik|Wdr56|mKIAA1374	intraflagellar transport 80	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-164935174-1	chr2	164935074	164935274	+	599.0	f1_balb.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-13045.0	NM_013599	17395.0	Mm.4406	NM_013599	ENSMUSG00000017737	Mmp9	AW743869|B/MMP9|Clg4b|Gel B|MMP-9|pro-MMP-9	matrix metallopeptidase 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6459724-4	chr19	6459629	6459829	+	994.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205235, intron 6 of 21)	intron (NM_001205235, intron 6 of 21)	40991.0	NM_001205234	18190.0	Mm.329616	NM_020253	ENSMUSG00000033768	Nrxn2	6430591O13Rik|mKIAA0921	neurexin II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28513931-4	chr17	28513849	28514049	+	998.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16912.0	NM_026290	67645.0	Mm.46170	NM_026290	ENSMUSG00000024223	Armc12	4930511I11Rik|AV041658	armadillo repeat containing 12	protein-coding	0.965855395999146	1.89765882338208	0.81606655127973	1.45402720153219	1.26422019312113	0.835273720190451	1.83889476188871	1.18673118347164	-0.086344328869588	0.948740794598673	0.998431161219273
Merged-chr3-106474401-4	chr3	106474315	106474515	+	948.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR104_Mam|LTR|Gypsy	-8016.0	NM_001093754	72121.0	Mm.14816	NM_028110	ENSMUSG00000027901	Dennd2d	2010308M01Rik|AI451421	DENN/MADD domain containing 2D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-20023141-3	chr3	20023064	20023264	+	731.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080634, intron 5 of 16)	intron (NM_080634, intron 5 of 16)	12146.0	NM_001146324	12807.0	Mm.291533	NM_080634	ENSMUSG00000027615	Hps3	coa	HPS3, biogenesis of lysosomal organelles complex 2 subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-71678647-2	chr4	71678547	71678747	+	691.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	522246.0	NM_011599	21885.0	Mm.278444	NM_011599	ENSMUSG00000008305	Tle1	C230057C06Rik|Estm14|Grg-1|Grg1|Tle4l	transducin-like enhancer of split 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-98178260-4	chr7	98178136	98178336	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007602)	promoter-TSS (NM_007602)	38.0	NM_007602	12337.0	Mm.326847	NM_007602	ENSMUSG00000035547	Capn5	nCL-3	calpain 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-46493342-4	chr18	46493246	46493446	+	851.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27530.0	NR_045438	72076.0	Mm.82766	NM_028086		Mospd4	2010013H21Rik	motile sperm domain containing 4	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-8003307-2	chr14	8003207	8003407	+	544.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001331064, intron 1 of 8)	intron (NM_001331064, intron 1 of 8)	341.0	NM_001331064	66082.0	Mm.181473	NM_025341	ENSMUSG00000025277	Abhd6	0610041D24Rik|AA673485|AV065425	abhydrolase domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-46739685-1	chr18	46739585	46739785	+	567.0	f1_c57bl6.idr	intron (NM_026217, intron 1 of 3)	B2_Mm2|SINE|B2	1894.0	NM_026217	67526.0	Mm.9852	NM_026217	ENSMUSG00000032905	Atg12	4931423H11Rik|A330058M13Rik|Apg12l|Atg12l	autophagy related 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-83658427-2	chr7	83658327	83658527	+	807.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360088, intron 12 of 18)	B3|SINE|B2	-2932.0	NM_001360089	16170.0	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	-0.526596105685667	-0.515934863244289	-0.34817774711711	-0.522136586013412	-0.525934026809903	-0.0291592860922515	-0.518668277924877	-0.105289005754672	2.45018935671286	0.34881893766238	1
Merged-chr7-84197595-3	chr7	84197462	84197662	+	863.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45669.0	NM_133722	70178.0	Mm.23914	NM_133722	ENSMUSG00000038459	Abhd17c	2210412D01Rik|AL023007|Fam108c|Fam108c1	abhydrolase domain containing 17C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-63413758-4	chr14	63413684	63413884	+	818.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007549, intron 1 of 12)	intron (NM_007549, intron 1 of 12)	3403.0	NM_007549	12143.0	Mm.3962	NM_007549	ENSMUSG00000014453	Blk	-	B lymphoid kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101968440-2	chr7	101968381	101968581	+	731.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-1362.0	NM_133947	101706.0	Mm.27259	NM_133947	ENSMUSG00000066306	Numa1	6720401E04Rik|AA764025|AL022610|AU014979|NuMA	nuclear mitotic apparatus protein 1	protein-coding	1.52856464561328	1.84476306229287	1.64911991622436	1.84536947879392	1.06300889539556	1.71695679357738	2.11891784664437	1.61275306414855	-0.103884462462711	0.924984497485853	0.998431161219273
Merged-chr5-26905374-4	chr5	26905275	26905475	+	914.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198886, intron 1 of 25)	intron (NM_001198886, intron 1 of 25)	597.0	NM_001198886	13483.0	Mm.42078	NM_010075	ENSMUSG00000061576	Dpp6	B930011P16Rik|D5Buc3|D5Buc4|D5Buc5|DPP VI|Dpp-6|Gm1377|In(5)6H-p|Peplb|Rw	dipeptidylpeptidase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-150117018-4	chr5	150116991	150117191	+	650.643738	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	98416.0	NM_001289566	140498.0	Mm.444643	NM_080468	ENSMUSG00000053368	Rxfp2	Gpr106|Great|Lgr8	relaxin/insulin-like family peptide receptor 2	protein-coding	-1.7024385483431	-1.81249224917775	-1.82134771053534	-1.82862185015837	-1.70038292649591	-1.81057323376012	-1.81934302819017	-1.82731978264371	0.0376840119903864	0.991491645451152	1
Merged-chr16-57554267-1	chr16	57554167	57554367	+	585.0	f1_c57bl6.idr	intron (NM_001177871, intron 1 of 1)	intron (NM_001177871, intron 1 of 1)	5025.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0.275652837004721	0.306743165079831	1.51102364781481	0.652713051075458	0.953694865143843	0.308978573557348	0.515241020011842	0.290269684775579	-1.22101137673571	0.504307502791417	1
Merged-chr7-96408696-2	chr7	96408497	96408697	+	818.75	f0_balb.idr|f1_balb.idr	intron (NM_011858, intron 2 of 32)	intron (NM_011858, intron 2 of 32)	-66633.0	NR_046043	670727.0	Mm.421352	NR_046043	ENSMUSG00000085751	Gm15412	-	predicted gene 15412	ncRNA	1.0007409102632	0.617106222094422	0.606749602504753	1.37841256985379	1.01052258204943	0.619425959960442	1.44561173240992	0.938889831384206	0.409965133845137	0.793113708512005	0.998431161219273
Merged-chr9-82974331-4	chr9	82974244	82974444	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081216, intron 4 of 39)	(CCG)n|Simple_repeat|Simple_repeat	1145.0	NM_001081216	83946.0	Mm.221688	NM_031879	ENSMUSG00000032253	Phip	2810004D21Rik|4632404O06Rik|Ndrp|Wdr11	pleckstrin homology domain interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-94122546-2	chr11	94122446	94122646	+	729.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025428, intron 26 of 26)	B3|SINE|B2	78341.0	NM_001025429	70834.0	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56182889-2	chr17	56182789	56182989	+	673.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_080837, intron 1 of 5)	PB1|SINE|Alu	1031.0	NM_080837	28106.0	Mm.294870	NM_080837	ENSMUSG00000019579	Mydgf	D17Wsu104e|Il25|Ly6elg	myeloid derived growth factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78625663-1	chr15	78625563	78625763	+	575.0	f1_c57bl6.idr	Intergenic	Intergenic	28616.0	NM_028195	72318.0	Mm.32911	NM_028195	ENSMUSG00000018008	Cyth4	2510004M07Rik|5830469K17Rik|AI467541|Pscd4|mFLJ00017	cytohesin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-99381794-4	chr5	99381681	99381881	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 2 of 3)	intron (NR_030692, intron 2 of 3)	-128854.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124023848-1	chr5	124023748	124023948	+	834.0	f1_balb.idr	intron (NM_177876, intron 1 of 3)	intron (NM_177876, intron 1 of 3)	8412.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	0.47106645645755	1.57152173057244	0.497119170106526	0.487458818591403	0.813392146844229	1.10995671349478	0.499852916204671	1.44836427671894	0.577679150574303	0.733871565643929	0.998431161219273
Merged-chr10-54121307-2	chr10	54121207	54121407	+	616.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45385.0	NR_038016	100502920.0	Mm.403982	NR_038016	ENSMUSG00000097069	Gm16998	-	predicted gene, 16998	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-34236510-4	chr1	34236405	34236605	+	898.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276764, intron 60 of 102)	intron (NM_001276764, intron 60 of 102)	76175.0	NM_010081	13518.0	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-13246891-4	chr9	13246817	13247017	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025534)	promoter-TSS (NM_025534)	-39.0	NM_025534	66396.0	Mm.290620	NM_025534	ENSMUSG00000079084	Ccdc82	2310043N13Rik	coiled-coil domain containing 82	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124859000-2	chr6	124858900	124859100	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001355257, exon 6 of 6)	exon (NM_001355257, exon 6 of 6)	-1313.0	NM_013534	14789.0	Mm.35708	NM_013534	ENSMUSG00000023191	P3h3	BC016431|Grcb|Leprel2	prolyl 3-hydroxylase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117655114-1	chr11	117655014	117655214	+	711.0	f0_balb.idr	intron (NM_198022, intron 1 of 21)	CpG	825.0	NM_198022	217351.0	Mm.40272	NM_198022	ENSMUSG00000025571	Tnrc6c	9930033H14Rik|mKIAA1582	trinucleotide repeat containing 6C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122053657-2	chr5	122053557	122053757	+	741.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3806.0	NM_001312908	13048.0	Mm.156172	NM_007804	ENSMUSG00000042589	Cux2	1700051K22Rik|Cutl2|Cux-2	cut-like homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-154986231-2	chr4	154986131	154986331	+	913.625	f1_balb.idr|f1_c57bl6.idr	exon (NM_175556, exon 21 of 23)	exon (NM_175556, exon 21 of 23)	22108.0	NR_131230	269614.0	Mm.30042	NM_172990	ENSMUSG00000029056	Pank4	D030031I12Rik|R75150	pantothenate kinase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-44978690-1	chr2	44978590	44978790	+	541.0	f0_balb.idr	Intergenic	Intergenic	44487.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-123356352-3	chr7	123356273	123356473	+	762.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316713, intron 1 of 19)	intron (NM_001316713, intron 1 of 19)	13542.0	NM_001122643	70497.0	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-173528172-3	chr2	173528037	173528237	+	696.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028158, intron 3 of 3)	intron (NM_028158, intron 3 of 3)	5545.0	NM_028158	72221.0	Mm.46132	NM_028158	ENSMUSG00000027518	1700021F07Rik	-	RIKEN cDNA 1700021F07 gene	protein-coding	2.98345921264792	3.52973408291611	1.62710062591206	3.46237261178197	3.50024249568043	2.24971875380935	3.72037724106207	3.72819683993649	0.536922463571589	0.460018712010944	0.920750690285086
Merged-chr10-80921609-2	chr10	80921509	80921709	+	546.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3364.0	NM_010722	16907.0	Mm.7362	NM_010722	ENSMUSG00000062075	Lmnb2	-	lamin B2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-55801788-4	chr16	55801692	55801892	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20346.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-41350084-4	chr15	41349975	41350175	+	902.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-97407.0	NR_152565	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-113419349-4	chr6	113419267	113419467	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346511)	promoter-TSS (NM_001346511)	-19.0	NM_001346511	101122.0	Mm.31204	NM_001033204	ENSMUSG00000051169	Rpusd3	AI527266	RNA pseudouridylate synthase domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-40809733-7	chr9	40809566	40809766	+	923.095215	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8393.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-52094796-4	chr11	52094715	52094915	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4009.0	NM_019411	19052.0	Mm.260288	NM_019411	ENSMUSG00000020349	Ppp2ca	PP2A|R75353	protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111416925-4	chr12	111416842	111417042	+	997.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028807)	promoter-TSS (NM_028807)	-488.0	NM_001289487	74190.0	Mm.248640	NM_028807	ENSMUSG00000021280	Exoc3l4	1200009I06Rik|1600013K19Rik	exocyst complex component 3-like 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-82696814-7	chr10	82696756	82696956	+	845.5714109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2151.0	NM_001081218	67933.0	Mm.127405	NM_026462	ENSMUSG00000020246	Hcfc2	1700129L13Rik|AU019838|fkls	host cell factor C2	protein-coding	-0.3210157491367	-0.305764614545395	-0.310742990869063	-0.314595865002598	-0.320058825024873	-0.304644768891623	0.405888076460327	0.355643326415598	3.82261086159988	0.130784287531922	1
Merged-chr9-118590903-1	chr9	118590803	118591003	+	540.0	f1_c57bl6.idr	Intergenic	Intergenic	-15806.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-75715172-2	chr7	75715072	75715272	+	611.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 17 of 36)	intron (NM_029332, intron 17 of 36)	-133166.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-41636751-3	chr4	41636654	41636854	+	651.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175138, intron 19 of 19)	MIR3|SINE|MIR	3548.0	NM_027147	69638.0	Mm.372459	NM_027147	ENSMUSG00000028445	Enho	1110065P19Rik|2310040A07Rik	energy homeostasis associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36941356-4	chr1	36941245	36941445	+	803.729126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1818.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-70297010-4	chr10	70296931	70297131	+	996.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51755.0	NM_025807	66859.0	Mm.19325	NM_025807	ENSMUSG00000037762	Slc16a9	1200003C15Rik|4930425B13Rik|AI552636	solute carrier family 16 (monocarboxylic acid transporters), member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-58622603-3	chr15	58622499	58622699	+	705.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	200828.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-142458136-4	chr7	142458029	142458229	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	-2683.0	NM_001271510	16985.0	Mm.234003	NM_019391	ENSMUSG00000018819	Lsp1	Lsp-1|WP34|p50|pp52	lymphocyte specific 1	protein-coding	3.65861725157912	4.51819561674044	4.69008226514976	3.92325007315716	3.46854541230288	4.26373077380195	4.41039345595418	3.87584969996925	-0.282776211138682	0.544103226419189	0.955606221307715
Merged-chr17-71479706-3	chr17	71479601	71479801	+	977.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	-4358.0	NM_028887	74355.0	Mm.194450	NM_028887	ENSMUSG00000024054	Smchd1	4931400A14Rik|AW554188|MommeD1|mKIAA0650	SMC hinge domain containing 1	protein-coding	1.60959304903293	2.02796251640973	0.85151665251173	1.71004721453782	1.30138157211685	1.4742765229207	0.855101056317147	0.841076370610484	-1.71760106471601	0.209133212176572	0.698546848467292
Merged-chr12-91305995-4	chr12	91305906	91306106	+	996.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181815, intron 10 of 25)	intron (NM_181815, intron 10 of 25)	78403.0	NM_181815	75216.0	Mm.312204	NM_181815	ENSMUSG00000061533	Cep128	4930534B04Rik|5430424K18Rik|AI449708|AI480494|E230024F20	centrosomal protein 128	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-90494327-3	chr6	90494229	90494429	+	971.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31753.0	NM_023184	66277.0	Mm.38343	NM_023184	ENSMUSG00000030087	Klf15	1810013I09Rik|AV048136|AW494632|CKLF|KKLF	Kruppel-like factor 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-108437326-2	chr3	108437226	108437426	+	621.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011319, intron 2 of 11)	B1_Mus1|SINE|Alu	7933.0	NM_011319	20226.0	Mm.28688	NM_011319	ENSMUSG00000068739	Sars	Sars1|Strs|serRS	seryl-aminoacyl-tRNA synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-78748147-2	chr12	78748068	78748268	+	679.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019579)	promoter-TSS (NM_019579)	-779.0	NM_019579	56217.0	Mm.425777	NM_019579	ENSMUSG00000021112	Mpp5	3830420B02Rik|AI255216|AI644496|Pals1	membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)	protein-coding	2.36161872531316	2.6530847627393	2.66237378539445	2.38403412249472	2.16801072757236	3.03924122376698	1.40453498995644	1.99652256012653	-0.475082710298118	0.589511831728372	0.968907675192219
Merged-chr11-53763002-4	chr11	53762904	53763104	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_106131)	TTS (NR_106131)	650.0	NR_106131	102465772.0		NR_106131	ENSMUSG00000099153	Mir7671	Gm27802|mmu-mir-7671	microRNA 7671	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100511831-4	chr7	100511727	100511927	+	996.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_153527, exon 2 of 8)	exon (NM_153527, exon 2 of 8)	2988.0	NM_153527	69387.0	Mm.278554	NM_153527	ENSMUSG00000030708	Dnajb13	1700014P03Rik|Tsarg	DnaJ heat shock protein family (Hsp40) member B13	protein-coding	3.59501981233895	3.11770667948317	2.43499328267598	4.07099140061898	3.16397041025003	3.62585258996729	3.14534497587802	3.14641562438486	-0.265518431675226	0.666457219833358	0.992515300319318
Merged-chr7-45132229-2	chr7	45132129	45132329	+	637.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_013520, exon 7 of 9)	exon (NM_013520, exon 7 of 9)	-3484.0	NM_009438	22121.0	Mm.180458	NM_009438	ENSMUSG00000074129	Rpl13a	1810026N22Rik|Tstap198-7|tum-antigen	ribosomal protein L13A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-26454842-4	chr12	26454720	26454920	+	789.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021384, intron 1 of 5)	intron (NM_021384, intron 1 of 5)	1632.0	NM_021384	58185.0	Mm.24045	NM_021384	ENSMUSG00000020641	Rsad2	2510004L01Rik|Vig1|cig5	radical S-adenosyl methionine domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120720635-4	chr11	120720536	120720736	+	935.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133223)	promoter-TSS (NM_133223)	-832.0	NM_133223	170758.0	Mm.34008	NM_133223	ENSMUSG00000018012	Rac3	Rac1B	Rac family small GTPase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-79498829-4	chr8	79498732	79498932	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-99364.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47250155-4	chr17	47250068	47250268	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001097623, intron 4 of 19)	intron (NM_001097623, intron 4 of 19)	19938.0	NM_172622	224829.0	Mm.260989	NM_172622		Trerf1	9430096I18Rik|AI429294|B830015H24|RAPA|Trep-132|Trep132	transcriptional regulating factor 1	protein-coding	5.07879213796409	3.06281473706254	3.97298430733544	5.27995930817082	4.3782103360314	2.273519161842	4.26661645904056	4.91352312291032	-0.467613824502614	0.614125011778556	0.977250439470701
Merged-chr11-46314904-4	chr11	46314830	46315030	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2c|LINE|L2	-2071.0	NM_001252459	76884.0	Mm.154358	NM_133769	ENSMUSG00000020340	Cyfip2	1500004I01Rik|6430511D02Rik|AA930218|AU022376|Pir121|mKIAA1168	cytoplasmic FMR1 interacting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-75834413-4	chr14	75834296	75834496	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	HAL1M8|LINE|L1	10568.0	NR_045294	100043189.0	Mm.426329	NR_045294		Gm4285	-	predicted gene 4285	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-99488810-4	chr5	99488744	99488944	+	883.074402	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 2 of 3)	ORR1D2|LTR|ERVL-MaLR	-235917.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-52168137-2	chr19	52168037	52168237	+	974.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-96160.0	NM_008386	16333.0	Mm.46269	NM_008386	ENSMUSG00000035804	Ins1	Ins-1|Ins2-rs1	insulin I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-51284865-4	chr2	51284795	51284995	+	693.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040636, intron 1 of 2)	intron (NR_040636, intron 1 of 2)	43064.0	NR_040636	329404.0	Mm.417725	NR_040636	ENSMUSG00000086349	Gm13497	A730015I17	predicted gene 13497	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-12540153-4	chr19	12540063	12540263	+	954.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33347.0	NM_001346545	107373.0	Mm.1643	NM_026640	ENSMUSG00000024691	Fam111a	4632417K18Rik|AW413625	family with sequence similarity 111, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-8174861-3	chr14	8174752	8174952	+	784.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1860.0	NM_024221	68263.0	Mm.301527	NM_024221	ENSMUSG00000021748	Pdhb	2610103L06Rik|AL024199|C81408	pyruvate dehydrogenase (lipoamide) beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126566439-4	chr7	126566290	126566490	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146200)	promoter-TSS (NM_146200)	-24.0	NM_146200	56347.0	Mm.22776	NM_146200	ENSMUSG00000030738	Eif3c	110kDa|3230401O13Rik|Eif3s8|NIPIL(A3)|NipilA3|Xs|Xsl	eukaryotic translation initiation factor 3, subunit C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55812494-3	chr19	55812373	55812573	+	710.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001331146, intron 4 of 14)	intron (NM_001331146, intron 4 of 14)	70663.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.935779781174946	0.107803868666224	0.098624213055289	0.0914331524339652	0.264726206690011	1.27443700363421	0.100662249069285	0.0926964704877571	0.877384803292862	0.669020257451977	1
Merged-chr3-152886950-2	chr3	152886864	152887064	+	840.7999880000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_012028, intron 2 of 4)	intron (NM_012028, intron 2 of 4)	95243.0	NM_012028	26938.0	Mm.40915	NM_012028	ENSMUSG00000039037	St6galnac5	AI851940|Siat7e	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	protein-coding	1.15993448145985	1.38986399352672	1.32113596144412	2.69784233889737	2.67358201812988	4.44945676436843	3.99863641977278	4.30142270190445	3.84901592552613	0.00710625920393942	0.0857694273934537
Merged-chr15-35293149-4	chr15	35293077	35293277	+	820.549988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2935.0	NM_054049	107587.0	Mm.46336	NM_054049	ENSMUSG00000022330	Osr2	5430409I15Rik|Osr2A|Osr2B	odd-skipped related 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-68557092-1	chr8	68556992	68557192	+	836.666687	f0_balb.idr	5' UTR (NM_001252623, exon 4 of 11)	5' UTR (NM_001252623, exon 4 of 11)	178054.0	NM_001252623	234356.0	Mm.334569	NM_172753	ENSMUSG00000036356	Csgalnact1	4732435N03Rik|CSGalNAcT-1	chondroitin sulfate N-acetylgalactosaminyltransferase 1	protein-coding	2.51902838547591	1.8326127337961	1.39887222560342	2.59575272045323	2.18589849397925	1.18576705275999	1.61206655069618	1.5644381439754	-1.27125422323768	0.22979467142893	0.723515518143187
Merged-chr17-12892295-4	chr17	12892212	12892412	+	895.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034866, intron 14 of 18)	intron (NM_001034866, intron 14 of 18)	16278.0	NM_030726	80978.0	Mm.160368	NM_030726	ENSMUSG00000059408	Mrgprh	Gpr90|Mgrb|MrgH	MAS-related GPR, member H	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97461319-1	chr6	97461219	97461419	+	592.0	f1_balb.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	-2033.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0.977961596650529	0.826794135153523	0.802064733721993	2.6850207402334	1.60733056031423	2.09388994600259	0.807613387740032	1.42581372298826	-0.219281253626244	0.871905745694851	0.998431161219273
Merged-chr16-32079305-4	chr16	32079190	32079390	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177326)	promoter-TSS (NM_177326)	52.0	NM_177326	224105.0	Mm.234204	NM_177326	ENSMUSG00000022781	Pak2	5330420P17Rik|A130002K10Rik|AI836325|D16Ertd269e|PAK-2|mKIAA4182	p21 (RAC1) activated kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165286581-4	chr2	165286471	165286671	+	965.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252575, intron 1 of 9)	intron (NM_001252575, intron 1 of 9)	1216.0	NM_001252574	228875.0	Mm.21184	NM_144893	ENSMUSG00000017664	Slc35c2	C85957|CGI-15|D2Wsu58e|Ovcov1	solute carrier family 35, member C2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-44777629-4	chr17	44777518	44777718	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178652, intron 1 of 11)	CpG	452.0	NM_178652	109115.0	Mm.431327	NM_178652	ENSMUSG00000038954	Supt3	2310066G22Rik|AI315192|SPT3|SPT3L|Supt3h	suppressor of Ty 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-100215108-2	chr6	100215008	100215208	+	585.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	72250.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-54927506-4	chr1	54927393	54927593	+	931.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1106.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-83742860-3	chr7	83742738	83742938	+	885.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7299.0	NM_010551	16170.0	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	1.29585993225997	1.08567236399179	0.746202256155507	1.21627567302151	0.541081258361737	0.569599207582987	0.560377493873771	1.0090486598846	-2.33897365946432	0.155954955608822	1
Merged-chr13-38658592-4	chr13	38658526	38658726	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025380, intron 1 of 3)	CpG	402.0	NM_025380	66143.0	Mm.490319	NM_025380	ENSMUSG00000001707	Eef1e1	1110003A02Rik	eukaryotic translation elongation factor 1 epsilon 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-45197558-4	chr2	45197430	45197630	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-80088.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-47561014-4	chr6	47560917	47561117	+	975.116699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146689, intron 3 of 19)	intron (NM_001146689, intron 3 of 19)	34013.0	NM_001146689	14056.0	Mm.246688	NM_007971	ENSMUSG00000029687	Ezh2	Enx-1|Enx1h|KMT6|mKIAA4065	enhancer of zeste 2 polycomb repressive complex 2 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27327192-4	chr2	27327075	27327275	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_133905, intron 2 of 29)	intron (NR_133905, intron 2 of 29)	-79872.0	NM_138665	192166.0	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-144242671-4	chr1	144242559	144242759	+	998.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6445.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-81859706-4	chr7	81859621	81859821	+	788.200012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_111910, intron 1 of 7)	intron (NR_111910, intron 1 of 7)	720.0	NM_145375	107769.0	Mm.221412	NM_145375	ENSMUSG00000038623	Tm6sf1	AI428514|BC023123|C630016D09Rik	transmembrane 6 superfamily member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-82975636-7	chr9	82975510	82975710	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081216)	promoter-TSS (NM_001081216)	-121.0	NM_001081216	83946.0	Mm.221688	NM_031879	ENSMUSG00000032253	Phip	2810004D21Rik|4632404O06Rik|Ndrp|Wdr11	pleckstrin homology domain interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-80997384-4	chr17	80997294	80997494	+	954.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026516, intron 3 of 3)	intron (NM_026516, intron 3 of 3)	52762.0	NM_026516	68027.0	Mm.357108	NM_026516	ENSMUSG00000024245	Tmem178	2810417M05Rik|Tmem178a	transmembrane protein 178	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-24628689-5	chr16	24628584	24628784	+	784.099976	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 5 of 12)	intron (NM_178665, intron 5 of 12)	-93171.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4905244-3	chr16	4905119	4905319	+	816.299988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357062, intron 1 of 17)	intron (NM_001357062, intron 1 of 17)	19119.0	NM_001357061	17237.0	Mm.291326	NM_029657	ENSMUSG00000022517	Mgrn1	2610042J20Rik|mKIAA0544|md|nc	mahogunin, ring finger 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-64794103-2	chr9	64794003	64794203	+	712.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1|SINE|Alu	-16908.0	NM_001162917	102442.0	Mm.222473	NM_176935	ENSMUSG00000053641	Dennd4a	AI115600|AI851943|F730015K02Rik	DENN/MADD domain containing 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101264539-3	chr15	101264493	101264693	+	797.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2253.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	-0.605159523701947	-0.594116237171468	-0.597738223658067	0.0306133245632224	-0.604471279605959	-0.593299269534912	-0.596939695456833	-0.167618268272535	-0.704591710035489	0.805658358061801	1
Merged-chr6-71478267-1	chr6	71478167	71478367	+	771.5	f0_balb.idr	Intergenic	Intergenic	-15610.0	NM_009543	22644.0	Mm.422969	NM_009543	ENSMUSG00000052656	Rnf103	AW146237|AW212918|Zfp103|kf-1	ring finger protein 103	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-18015388-2	chr5	18015288	18015488	+	542.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081143, intron 6 of 7)	intron (NM_001081143, intron 6 of 7)	52818.0	NM_001081143	242851.0	Mm.332230	NM_001081143	ENSMUSG00000028777	Gnat3	Ggust|Gtn	guanine nucleotide binding protein, alpha transducing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-88395923-4	chr4	88395825	88396025	+	996.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081184, intron 37 of 43)	intron (NM_001081184, intron 37 of 43)	43001.0	NM_025760	66775.0	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	1.90911726126357	2.56362375769373	2.06610314737044	2.51306912868702	2.40396220941326	3.06290414751671	1.68840771632487	2.79564080532102	0.637706396577341	0.449282197382588	0.915609948344177
Merged-chr15-86202065-4	chr15	86201903	86202103	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12456.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-39039012-3	chr12	39038905	39039105	+	935.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	255294.0	NM_001163154	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111158943-2	chr12	111158843	111159043	+	996.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_130987)	TTS (NR_130987)	-7427.0	NM_001286122	22031.0	Mm.27431	NM_011632	ENSMUSG00000021277	Traf3	AI528849|CAP-1|CD40bp|CRAF1|LAP1|T-BAM|amn	TNF receptor-associated factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6118067-4	chr19	6118020	6118220	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_133678, exon 1 of 2)	exon (NM_133678, exon 1 of 2)	466.0	NM_133678	66406.0	Mm.303924	NM_133678	ENSMUSG00000024790	Sac3d1	2410004C24Rik|AU015683|shd1	SAC3 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150139933-2	chr4	150139833	150140033	+	923.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_019741, exon 10 of 14)	exon (NM_019741, exon 10 of 14)	-9039.0	NM_001085529	435818.0	Mm.359648	NM_001085529	ENSMUSG00000062064	Slc2a7	-	solute carrier family 2 (facilitated glucose transporter), member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-149170818-4	chr4	149170730	149170930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4125.0	NM_001081274	110208.0	Mm.252080	NM_025801	ENSMUSG00000028961	Pgd	0610042A05Rik|AU019875|C78335	phosphogluconate dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-83606670-2	chr8	83606560	83606760	+	548.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F1|SINE|Alu	-1515.0	NM_018808	81489.0	Mm.282092	NM_018808	ENSMUSG00000005483	Dnajb1	0610007I11Rik|DjB1|HSPF1|Hdj1|Hsp40	DnaJ heat shock protein family (Hsp40) member B1	protein-coding	0.252706023856877	1.18916431464369	1.12272683385413	0.264391408936578	0.568800000864845	0.506240906447881	0.273311840173279	0.265609839312137	-2.20539221411972	0.244912231547971	1
Merged-chr18-11658391-5	chr18	11658480	11658680	+	799.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081223, intron 1 of 18)	B1_Mus2|SINE|Alu	1231.0	NM_001081223	225182.0	Mm.154275	NM_175458	ENSMUSG00000041238	Rbbp8	9930104E21Rik|CtIP|RBBP-8|RIM|SAE2	retinoblastoma binding protein 8, endonuclease	protein-coding	-1.58994551673671	-1.55912852307891	-1.56844783632235	-1.57610299769523	-1.18549093183599	-1.55710898902261	-1.56633814807757	-1.57473272746952	1.78703309985663	0.610309988231842	1
Merged-chr15-66969843-4	chr15	66969765	66969965	+	976.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008681)	promoter-TSS (NM_008681)	-224.0	NM_008681	17988.0	Mm.30837	NM_008681	ENSMUSG00000005125	Ndrg1	CAP43|CMT4D|DRG1|HMSNL|NMSL|Ndr1|Ndrl|PROXY1|RTP|TDD5	N-myc downstream regulated gene 1	protein-coding	0.689542205524832	0.240209621498121	0.937484650328967	0.220287358715546	0.207618429188169	0.242689964140287	1.60074210493144	0.221831092295008	0.842027066617518	0.662594611835123	0.991056031673253
Merged-chr10-53635666-2	chr10	53635566	53635766	+	627.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081428, intron 16 of 17)	intron (NM_001081428, intron 16 of 17)	-5227.0	NM_027830	71567.0	Mm.278221	NM_027830	ENSMUSG00000058298	Mcm9	9030408O17Rik|Gm235|Mcmdc1	minichromosome maintenance 9 homologous recombination repair factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101045263-2	chr15	101045163	101045363	+	598.333374	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011323, exon 26 of 26)	3' UTR (NM_011323, exon 26 of 26)	9136.0	NM_001214911	668225.0	Mm.385011	NM_001214911	ENSMUSG00000095440	Fignl2	EG668225	fidgetin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-26972254-2	chr8	26972154	26972354	+	611.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-5082.0	NM_001101502	353310.0	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-104495615-2	chr2	104495515	104495715	+	979.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1126.0	NM_001145824	15259.0	Mm.257925	NM_010434	ENSMUSG00000027177	Hipk3	DYRK6|FIST3|PKY|mir-1902	homeodomain interacting protein kinase 3	protein-coding	0.393591451870482	0.431063921095782	1.51762360681054	1.27814372328221	0.396005516454309	0.433737293156924	0.421725929474642	1.28804363993025	-1.26670961413603	0.493292320798589	0.935679785535167
Merged-chr11-100629694-4	chr11	100629616	100629816	+	827.450012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177790, intron 6 of 7)	intron (NM_177790, intron 6 of 7)	6761.0	NM_028024	71966.0	Mm.274734	NM_028024	ENSMUSG00000017837	Nkiras2	2410003M04Rik|4930527H08Rik|D630018G21Rik|KBRAS2	NFKB inhibitor interacting Ras-like protein 2	protein-coding	3.90288105689366	3.67456165732228	3.7864961475956	4.40617514018265	3.21480246273713	3.40576122022291	3.66318065491714	3.70161896149487	-0.685475529590161	0.165727755394706	0.631105038899391
Merged-chr7-120829418-2	chr7	120829318	120829518	+	707.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-13413.0	NM_007908	13631.0	Mm.25997	NM_007908	ENSMUSG00000035064	Eef2k	C86191|eEF-2K	eukaryotic elongation factor-2 kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-31773427-2	chr2	31773327	31773527	+	778.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001283045, intron 1 of 10)	MTB_Mm-int|LTR|ERVL-MaLR	13254.0	NM_001283045	11350.0	Mm.1318	NM_009594	ENSMUSG00000026842	Abl1	AI325092|Abl|E430008G22Rik|c-Abl	c-abl oncogene 1, non-receptor tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-95825755-2	chr11	95825655	95825855	+	898.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_153104, intron 1 of 2)	intron (NM_153104, intron 1 of 2)	1255.0	NM_153104	237928.0	Mm.133075	NM_153104	ENSMUSG00000050860	Phospho1	D11Moh36|Phospo1	phosphatase, orphan 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-43955137-2	chr19	43955037	43955237	+	617.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2c|LINE|L2	-14939.0	NM_028029	71972.0	Mm.159024	NM_028029	ENSMUSG00000025195	Dnmbp	2410003L07Rik|2410003M15Rik|TUBA	dynamin binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120812274-3	chr8	120812193	120812393	+	894.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	73654.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-6749448-7	chr17	6749299	6749499	+	866.714294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009510, intron 6 of 12)	intron (NM_009510, intron 6 of 12)	33381.0	NM_009510	22350.0	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-107574948-2	chr8	107574848	107575048	+	543.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6A|LTR|ERVK	13534.0	NM_010817	17463.0	Mm.18347	NM_010817	ENSMUSG00000039067	Psmd7	AW107203|Mov-34|Mov34	proteasome (prosome, macropain) 26S subunit, non-ATPase, 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3765316-2	chr4	3765216	3765416	+	616.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 10 of 12)	intron (NM_001111096, intron 10 of 12)	50352.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-120619787-2	chr5	120619687	120619887	+	911.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_028041, exon 7 of 20)	exon (NM_028041, exon 7 of 20)	6657.0	NM_028041	71990.0	Mm.24495	NM_028041	ENSMUSG00000029599	Ddx54	2410015A15Rik|AI414901|DP97	DEAD (Asp-Glu-Ala-Asp) box polypeptide 54	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-137307063-1	chr5	137306963	137307163	+	598.0	f1_balb.idr	exon (NM_031405, exon 2 of 20)	exon (NM_031405, exon 2 of 20)	611.0	NM_031405	83701.0	Mm.387734	NM_031405	ENSMUSG00000037364	Srrt	2810019G02Rik|ASR2A|ASR2B|ASR2C|ASR2D|Ars2|Asr2	serrate RNA effector molecule homolog (Arabidopsis)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47277723-2	chr17	47277623	47277823	+	627.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001097623, intron 4 of 19)	B4|SINE|B4	47493.0	NM_172622	224829.0	Mm.260989	NM_172622		Trerf1	9430096I18Rik|AI429294|B830015H24|RAPA|Trep-132|Trep132	transcriptional regulating factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80673901-2	chr10	80673806	80674006	+	734.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021462, intron 2 of 13)	ID|SINE|ID	2387.0	NM_021462	17347.0	Mm.42126	NM_021462	ENSMUSG00000020190	Mknk2	2010016G11Rik|Gprk7|Mnk2	MAP kinase-interacting serine/threonine kinase 2	protein-coding	-0.734697168562934	-1.28094420828655	-1.29131886204401	-1.29984091153697	-1.31008363841169	-1.2786959775384	-1.28897026783925	-1.29831546875223	-2.42902550944018	0.482518537989684	1
Merged-chr2-3425952-2	chr2	3425852	3426052	+	582.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001302674, intron 2 of 13)	B3|SINE|B2	1821.0	NM_001302684	227525.0	Mm.23483	NM_146114	ENSMUSG00000026648	Dclre1c	9930121L06Rik|AI661365|Art|Snm1l	DNA cross-link repair 1C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-52390451-4	chr12	52390357	52390557	+	788.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	90152.0	NR_136881	102638611.0	Mm.363799	NR_136881	ENSMUSG00000111982	Gm35135	-	predicted gene, 35135	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-136847990-4	chr6	136847903	136848103	+	846.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_026639)	TTS (NM_026639)	9597.0	NM_026639	109978.0	Mm.31840	NM_026639	ENSMUSG00000030217	Art4	4432404K01Rik|ARTC4|DO|DOK1	ADP-ribosyltransferase 4	protein-coding	4.30794732686794	3.54215543359508	3.31470280079411	4.30418616233256	3.99180529421279	3.76035587953203	3.79965022111607	4.27785427663618	0.0330323305200227	0.945343524285017	0.998431161219273
Merged-chr13-54828756-3	chr13	54828665	54828865	+	697.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39360.0	NM_028841	74257.0	Mm.32883	NM_028841	ENSMUSG00000025875	Tspan17	2210021G21Rik|AI047581|Fbxo23|Tm4sf17	tetraspanin 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-20632857-1	chr11	20632757	20632957	+	618.0	f0_c57.idr	intron (NM_001038625, intron 1 of 1)	intron (NM_001038625, intron 1 of 1)	880.0	NM_001038625	58172.0	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-17891179-1	chr16	17891079	17891279	+	734.0	f0_balb.idr	intron (NM_001109750, intron 1 of 9)	CpG	549.0	NM_010048	13356.0	Mm.254515	NM_010048	ENSMUSG00000003166	Dgcr2	9930034O06Rik|DGS-C|Dgsc|Idd|Lan|Sez12|mKIAA0163	DiGeorge syndrome critical region gene 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-3579044-2	chr2	3578944	3579144	+	561.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	65979.0	NM_177647	227526.0	Mm.211455	NM_177647	ENSMUSG00000039496	Cdnf	9330140G23|Armetl1	cerebral dopamine neurotrophic factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-102697737-4	chr11	102697606	102697806	+	999.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025918)	promoter-TSS (NM_025918)	19.0	NM_025918	52715.0	Mm.277638	NM_025918	ENSMUSG00000020925	Ccdc43	2610001E01Rik|D11Ertd707e	coiled-coil domain containing 43	protein-coding	2.13657961778821	1.80364049882722	1.53927475844263	2.13991906903811	1.44609316456103	2.81440846069233	2.63602919725542	2.3706544799775	1.15109766184114	0.219188212790731	0.710517864987671
Merged-chr2-14324144-2	chr2	14324044	14324244	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008625, intron 25 of 29)	RMER3D-int|LTR|ERVK	63141.0	NR_030609	100124488.0		NR_030609	ENSMUSG00000077897	Mir511	Mirn511|mir-511|mmu-mir-511	microRNA 511	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-110976185-2	chr10	110976085	110976285	+	687.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359624, intron 3 of 16)	intron (NM_001359624, intron 3 of 16)	33824.0	NM_001359622	320150.0	Mm.339281	NM_172554	ENSMUSG00000035798	Zdhhc17	A230053P19Rik|BB187739|D130071N24Rik|DHHC-17|Hip14	zinc finger, DHHC domain containing 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-55196570-4	chr15	55196488	55196688	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037937, intron 4 of 8)	intron (NM_001037937, intron 4 of 8)	63152.0	NM_001037937	97998.0	Mm.295397	NM_145470	ENSMUSG00000022419	Deptor	Depdc6	DEP domain containing MTOR-interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-120366391-6	chr10	120366442	120366642	+	821.930542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010441, intron 4 of 4)	intron (NM_010441, intron 4 of 4)	-22981.0	NR_040626	320626.0	Mm.446091	NR_040626	ENSMUSG00000090191	9230105E05Rik	-	RIKEN cDNA 9230105E05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-11411744-3	chr19	11411651	11411851	+	875.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029499, intron 1 of 6)	intron (NM_029499, intron 1 of 6)	4090.0	NM_029499	64380.0	Mm.440715	NM_029499	ENSMUSG00000024675	Ms4a4c	5830413L19Rik|AI449185|Ms4a9	membrane-spanning 4-domains, subfamily A, member 4C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-94673563-2	chr11	94673463	94673663	+	613.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145828, intron 1 of 10)	RSINE1|SINE|B4	3930.0	NM_145828	217119.0	Mm.100638	NM_145828	ENSMUSG00000020868	Xylt2	E030002B02Rik|XT-II|XT2|xylT-II	xylosyltransferase II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-54160844-4	chr6	54160732	54160932	+	979.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163640, intron 1 of 12)	intron (NM_001163640, intron 1 of 12)	-104026.0	NM_001311133	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	-1.5061220274826	-1.47360709383584	-1.48343987814663	-1.49151681994238	-1.50383953926072	-1.47147628845725	-1.0170701920923	-1.49007105122263	2.15652851593596	0.535359572134045	1
Merged-chr8-70729377-3	chr8	70729273	70729473	+	753.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201607, intron 3 of 16)	intron (NM_201607, intron 3 of 16)	5309.0	NM_201607	110385.0	Mm.255180	NM_201607	ENSMUSG00000031842	Pde4c	Dpde1|E130301F19Rik|dunce	phosphodiesterase 4C, cAMP specific	protein-coding	1.57485448307831	2.09497464886324	1.60249242862641	0.97812504237854	1.37675719805127	1.20609763171891	1.61548247549269	0.979725023662719	-1.22469371771624	0.339715245578517	0.840508011366039
Merged-chr10-80146237-2	chr10	80146137	80146337	+	971.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_025313)	TTS (NM_025313)	-2035.0	NM_001305798	59090.0	Mm.143813	NM_021565	ENSMUSG00000035621	Midn	3000003C15Rik	midnolin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-61706646-4	chr10	61706533	61706733	+	948.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-8630.0	NM_178058	71361.0	Mm.286309	NM_153779	ENSMUSG00000020085	Aifm2	5430437E11Rik|Amid|D730001I10Rik|PRG3	apoptosis-inducing factor, mitochondrion-associated 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105938017-4	chr8	105937834	105938034	+	988.4027710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013640, intron 1 of 7)	intron (NM_013640, intron 1 of 7)	458.0	NM_013640	19171.0	Mm.787	NM_013640	ENSMUSG00000031897	Psmb10	Mecl-1|Mecl1	proteasome (prosome, macropain) subunit, beta type 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-93478924-4	chr1	93478814	93479014	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159718)	promoter-TSS (NM_001159718)	3.0	NM_133808	110611.0	Mm.30012	NM_133808	ENSMUSG00000034088	Hdlbp	1110005P14Rik|AA960365|AI118566|D1Ertd101e	high density lipoprotein (HDL) binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-65611639-2	chr17	65611539	65611739	+	900.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355402, intron 1 of 6)	intron (NM_001355402, intron 1 of 6)	1916.0	NM_001355402	30960.0	Mm.266767	NM_013933	ENSMUSG00000024091	Vapa	33kDa|VAP33	vesicle-associated membrane protein, associated protein A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-173769375-4	chr2	173769270	173769470	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019806, intron 2 of 5)	intron (NM_019806, intron 2 of 5)	31799.0	NM_019806	56491.0	Mm.260456	NM_019806	ENSMUSG00000054455	Vapb	AI225786|AI840687|AI848259|D2Abb2e|R75548|VAP33b|Vamp33b	vesicle-associated membrane protein, associated protein B and C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126831469-2	chr8	126831369	126831569	+	789.428589	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17551.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-42299574-4	chr6	42299473	42299673	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013491, exon 10 of 23)	exon (NM_013491, exon 10 of 23)	12888.0	NM_013491	12723.0	Mm.386757	NM_013491	ENSMUSG00000029862	Clcn1	Clc-1|Clc1|SMCC1|adr|mto|myotonia|nmf355	chloride channel, voltage-sensitive 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27046811-4	chr17	27046656	27046856	+	790.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10548.0	NM_080553	16440.0	Mm.458106	NM_080553	ENSMUSG00000042644	Itpr3	IP3R 3|Ip3r3|Itpr-3|tf	inositol 1,4,5-triphosphate receptor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-46574403-4	chr18	46574312	46574512	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_173394, exon 1 of 3)	5' UTR (NM_173394, exon 1 of 3)	121.0	NM_173394	225471.0	Mm.149280	NM_173394	ENSMUSG00000056130	Ticam2	B430113A10|TICAM-2|TRAM|Tirp|Trif	toll-like receptor adaptor molecule 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89163688-2	chr3	89163588	89163788	+	988.6666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-1107.0	NM_001310016	105943584.0		NM_001310016		Gm45927	Clk2-scamp3|TU52	predicted gene, 45927	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-34958606-4	chr4	34958570	34958770	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178061, intron 3 of 3)	intron (NM_178061, intron 3 of 3)	-47189.0	NR_040652	73696.0	Mm.1361	NR_040652	ENSMUSG00000085824	Platr9	2410114N07Rik	pluripotency associated transcript 9	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-18608358-3	chr2	18608252	18608452	+	733.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64110.0	NM_147778	12238.0	Mm.249586	NM_147778	ENSMUSG00000051154	Commd3	AW550818|Bup|D2Ertd542e	COMM domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-133332433-2	chr3	133332333	133332533	+	992.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001293641, intron 5 of 11)	intron (NM_001293641, intron 5 of 11)	22323.0	NM_001293641	74776.0	Mm.210305	NM_146141	ENSMUSG00000028013	Ppa2	1110013G13Rik|Sid6306	pyrophosphatase (inorganic) 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165927248-2	chr2	165927148	165927348	+	783.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-42410.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	0.288192831271358	0.319003619672084	0.309074146847121	1.38106378248311	0.961622557401471	1.03983309179335	0.311277273039329	0.302670621827869	0.0590661004296803	0.975814666933718	1
Merged-chr19-45650148-4	chr19	45650003	45650203	+	906.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013907, intron 1 of 8)	B2_Mm2|SINE|B2	10090.0	NM_013907	30838.0	Mm.254739	NM_013907	ENSMUSG00000040913	Fbxw4	Dac|Fbw4|SHFM3|SHSF3|dactylin|dactylyn	F-box and WD-40 domain protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-46152606-4	chr18	46152485	46152685	+	963.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46233.0	NM_001170855	28105.0	Mm.277382	NM_178872	ENSMUSG00000033949	Trim36	D18Wsu100e|haprin	tripartite motif-containing 36	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-75297665-4	chr4	75297575	75297775	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	-19383.0	NM_025849	66928.0	Mm.24332	NM_025849	ENSMUSG00000028398	Dmac1	1700027K24Rik|3110001D03Rik|Tmem261	distal membrane arm assembly complex 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-90136996-4	chr7	90136898	90137098	+	980.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360867, intron 1 of 19)	B2_Mm1t|SINE|B2	6785.0	NM_001252520	233489.0	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	1.59826110183163	1.21076589629892	0.780507575113308	1.7010054572252	0.932511353206025	1.75163345277062	0.783628848107908	0.971960955830463	-0.729410618167431	0.599585980982942	0.972577638553403
Merged-chr6-48445517-4	chr6	48445454	48445654	+	973.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001085415)	promoter-TSS (NM_001085415)	271.0	NM_020589	68910.0	Mm.2464	NM_020589	ENSMUSG00000068551	Zfp467	1190001I08Rik|AB041616|AI426952|AV017623|EZI|MNCb-3350|Znf467	zinc finger protein 467	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-10698393-2	chr14	10698293	10698493	+	615.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360141, intron 4 of 9)	intron (NM_001360141, intron 4 of 9)	-40160.0	NR_131139	547334.0	Mm.434606	NR_131139	ENSMUSG00000089833	Fhitos	Gm16542	fragile histidine triad gene, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-53473004-2	chr16	53472904	53473104	+	759.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-657260.0	NR_040495	73820.0	Mm.60493	NR_040495		4930404A05Rik	-	RIKEN cDNA 4930404A05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97623395-1	chr11	97623295	97623495	+	615.0	f1_c57bl6.idr	TTS (NR_045496)	TTS (NR_045496)	6321.0	NM_175332	103551.0	Mm.24506	NM_175332	ENSMUSG00000043439	Epop	AA409164|AI413509|AW539173|E13|E130012A19Rik|esPRC2p48	elongin BC and polycomb repressive complex 2 associated protein	protein-coding	1.19379588313119	1.9183471462301	0.978987797199847	0.954454556449802	1.20468298825689	1.63461299074846	0.767346860993441	0.958776819611548	-0.543726377987631	0.681938152649817	0.995882295196263
Merged-chr13-37893219-3	chr13	37893119	37893319	+	948.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039188, intron 3 of 9)	intron (NM_001039188, intron 3 of 9)	4348.0	NM_001177869	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-172430877-2	chr2	172430777	172430977	+	747.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080820, intron 6 of 6)	intron (NM_001080820, intron 6 of 6)	-9701.0	NM_025542	66404.0	Mm.25157	NM_025542	ENSMUSG00000027502	Rtf2	1700067C04Rik|2410001C21Rik|5730427M17Rik|AA589417|Rtfdc1	replication termination factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-12833773-4	chr19	12833671	12833871	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001361971)	TTS (NM_001361971)	-28006.0	NM_146702	258697.0	Mm.223132	NM_146702	ENSMUSG00000046272	Olfr1444	MOR202-4	olfactory receptor 1444	protein-coding	4.75890873537365	4.2450695676902	4.89003235793153	4.45756194225953	4.94966598884787	5.07321760921868	5.07388877056863	4.70744847417235	0.415806672666134	0.225692666597244	0.717757717043754
Merged-chr13-23583261-9	chr13	23583234	23583434	+	862.5031130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_178194)	TTS (NM_178194)	1732.0	NM_175654	319156.0	Mm.260530	NM_175654	ENSMUSG00000061482	Hist1h4d	-	histone cluster 1, H4d	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-87591206-3	chr11	87591095	87591295	+	746.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357901)	promoter-TSS (NM_001357901)	-971.0	NM_001357901	170749.0	Mm.399376	NM_133215	ENSMUSG00000018401	Mtmr4	AA596759|ESTM44|FYVE-DSP2|ZFYVE11|mKIAA0647	myotubularin related protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-112084641-4	chr13	112084550	112084750	+	970.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-203801.0	NM_001168403	77318.0	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80931137-2	chr10	80931037	80931237	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008655, exon 3 of 4)	exon (NM_008655, exon 3 of 4)	1046.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-20154992-4	chr3	20154899	20155099	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013755, exon 1 of 7)	exon (NM_013755, exon 1 of 7)	117.0	NM_001355261	27357.0	Mm.6375	NM_013755	ENSMUSG00000019528	Gyg	AU017667|GN1|Gyg1	glycogenin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-79993070-4	chr11	79992983	79993183	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163018)	promoter-TSS (NM_001163018)	-23.0	NM_001163018	52615.0	Mm.283410	NM_199196	ENSMUSG00000017548	Suz12	2610028O16Rik|AI195385|AU016842|AW536442|D11Ertd530e|mKIAA0160	SUZ12 polycomb repressive complex 2 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-71047377-3	chr2	71047253	71047453	+	814.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145524, intron 1 of 9)	intron (NM_145524, intron 1 of 9)	8253.0	NM_145524	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-76844906-3	chr13	76844831	76845031	+	689.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030174, intron 15 of 20)	intron (NM_030174, intron 15 of 20)	290537.0	NM_134071	105377.0	Mm.209730	NM_134071	ENSMUSG00000021597	Slf1	2700017A04Rik|AW545819|Ankrd32|Brctd1|Brctx|C730024G01Rik	SMC5-SMC6 complex localization factor 1	protein-coding	0.952295911452617	1.34622021580353	1.17106507476395	0.675240313624009	0.960055327950384	1.35840093353006	1.18165242969632	0.676665919908805	0.0401888427562613	0.977824405252106	0.998431161219273
Merged-chr17-48262611-2	chr17	48262511	48262711	+	643.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC1|LINE|L1	-1684.0	NM_172623	224840.0	Mm.131234	NM_172623	ENSMUSG00000051682	Treml4	5031403H21Rik|BB137214|IDCP1|TLT-4|TLT4|Treml3	triggering receptor expressed on myeloid cells-like 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-83668052-2	chr8	83667952	83668152	+	889.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_013641, exon 2 of 3)	exon (NM_013641, exon 2 of 3)	1408.0	NM_013641	19216.0	Mm.213000	NM_013641	ENSMUSG00000019464	Ptger1	EP1|Ptgerep1	prostaglandin E receptor 1 (subtype EP1)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-82489251-2	chr12	82489151	82489351	+	680.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-127674.0	NM_001310478	50779.0	Mm.126176	NM_015812	ENSMUSG00000021219	Rgs6	-	regulator of G-protein signaling 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-108415484-2	chr3	108415384	108415584	+	775.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017392)	promoter-TSS (NM_017392)	10.0	NM_017392	53883.0	Mm.39728	NM_017392	ENSMUSG00000068740	Celsr2	Adgrc2|EGFL2|Flamingo1|flamingo|mKIAA0279|mfmi1	cadherin, EGF LAG seven-pass G-type receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-102459111-4	chr15	102459021	102459221	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001170911)	promoter-TSS (NM_001170911)	-49.0	NM_001170911	66151.0	Mm.393955	NM_025385	ENSMUSG00000023048	Prr13	1110020C13Rik|2010324E22Rik	proline rich 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-59544449-1	chr9	59544349	59544549	+	983.0	f0_balb.idr	intron (NM_010421, intron 1 of 13)	intron (NM_010421, intron 1 of 13)	4909.0	NM_010421	15211.0	Mm.2284	NM_010421	ENSMUSG00000025232	Hexa	Hex-1	hexosaminidase A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-63105248-2	chr14	63105109	63105309	+	847.583374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17253.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-54411727-2	chr14	54411627	54411827	+	622.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253679, intron 2 of 10)	intron (NM_001253679, intron 2 of 10)	-2255.0	NM_001253680	20540.0	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	-1.03224044282356	-0.528348676481903	-1.02497085245391	-1.02881515129378	-0.758703265733638	-1.01077896320256	-1.02233033167315	-1.02845414759798	-0.909622492857339	0.776854299466003	1
Merged-chr5-99271757-2	chr5	99271657	99271857	+	647.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18830.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-107922155-3	chr4	107922058	107922258	+	804.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009949, intron 1 of 4)	intron (NM_009949, intron 1 of 4)	1431.0	NM_009949	12896.0	Mm.307620	NM_009949	ENSMUSG00000028607	Cpt2	AI323697|CPTII	carnitine palmitoyltransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98149733-4	chr11	98149665	98149865	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028149)	promoter-TSS (NM_028149)	-149.0	NM_028149	72194.0	Mm.218350	NM_028149	ENSMUSG00000020883	Fbxl20	2610511F20Rik|4632423N09Rik|AI849362|AL117906|C86145|Fbl2|Scr|mKIAA4147	F-box and leucine-rich repeat protein 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-94886927-4	chr3	94886843	94887043	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008945)	promoter-TSS (NM_008945)	15.0	NM_008945	19172.0	Mm.368	NM_008945	ENSMUSG00000005779	Psmb4	Pros-27	proteasome (prosome, macropain) subunit, beta type 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-95180665-4	chr9	95180571	95180771	+	883.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177909, intron 14 of 15)	intron (NM_177909, intron 14 of 15)	226599.0	NM_018763	54371.0	Mm.212446	NM_018763	ENSMUSG00000033350	Chst2	AI428561|AW121776|C130041E03Rik|Chts2|GST-2|GlcNAc6ST|Gn6st	carbohydrate sulfotransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80050415-2	chr10	80050315	80050515	+	620.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_110342, intron 2 of 6)	intron (NR_110342, intron 2 of 6)	-3073.0	NM_008162	625249.0	Mm.332810	NM_008162	ENSMUSG00000075706	Gpx4	GPx-4|GSHPx-4|PHGPx|mtPHGPx|snGPx	glutathione peroxidase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85345113-4	chr12	85344988	85345188	+	947.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026775, intron 3 of 4)	intron (NM_026775, intron 3 of 4)	-5726.0	NM_145138	217718.0	Mm.29071	NM_145138	ENSMUSG00000034290	Nek9	C130021H08Rik	NIMA (never in mitosis gene a)-related expressed kinase 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-140548466-2	chr6	140548366	140548566	+	572.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144920, intron 11 of 30)	intron (NM_144920, intron 11 of 30)	-74197.0	NM_178803	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166473241-2	chr2	166473141	166473341	+	708.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25790.0	NR_015558	319684.0	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71287625-6	chr17	71287469	71287669	+	973.2777710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357337, intron 2 of 7)	(CCA)n|Simple_repeat|Simple_repeat	23442.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	0.715049715026349	0.566370594790201	0.551565016214881	0.939020967837857	1.02881334215202	1.34954704161114	2.01577789865328	0.541928121151502	2.85077855334323	0.0685863184693647	0.392854224536332
Merged-chr5-123371264-2	chr5	123371164	123371364	+	633.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_029850, exon 6 of 6)	3' UTR (NM_029850, exon 6 of 6)	-23534.0	NM_133917	208104.0	Mm.83277	NM_133917	ENSMUSG00000038342	Mlxip	AW228700|Mir|bHLHe36	MLX interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-30535363-2	chr19	30535263	30535463	+	851.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4316.0	NR_003650	546723.0	Mm.301509	NM_001037169		Ppp1r2-ps3	EG546723|Gm5972	protein phosphatase 1, regulatory (inhibitor) subunit 2, pseudogene 3	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-35265361-4	chr9	35265255	35265455	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286604, intron 2 of 9)	intron (NM_001286604, intron 2 of 9)	2450.0	NM_175411	109229.0	Mm.24197	NM_175411	ENSMUSG00000050471	Fam118b	2310022O21Rik|2700018L24Rik|C030004A17Rik|Ppp4r1l	family with sequence similarity 118, member B	protein-coding	1.67710666413294	0.9212885998207	1.83866373093511	2.11465281789164	1.4856690372258	1.540826009057	0.907285749636878	0.891541911667689	-1.57881142528123	0.233552498591423	0.729021588041712
Merged-chr4-8689405-3	chr4	8689297	8689497	+	586.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1009.0	NM_001277149	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-11461723-4	chr16	11461618	11461818	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028964, intron 13 of 20)	intron (NM_028964, intron 13 of 20)	56070.0	NM_001290148	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-66491976-3	chr8	66491863	66492063	+	814.122253	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5433.0	NM_001357208	66282.0	Mm.294985	NM_025465	ENSMUSG00000025591	Tma16	1810029B16Rik	translation machinery associated 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129302133-2	chr2	129302072	129302272	+	719.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_010554, intron 6 of 6)	intron (NM_010554, intron 6 of 6)	4802.0	NR_040371	100503468.0	Mm.446943	NR_040371	ENSMUSG00000085498	Gm14023	-	predicted gene 14023	ncRNA	0.294984490221769	0.762289884208706	0.10186123683686	-0.0857343108459375	-0.0917942093730493	-0.0746794521095097	-0.0802353648987467	0.087685448078969	-3.09616677230663	0.148445708970022	1
Merged-chr2-32916188-2	chr2	32916088	32916288	+	704.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146119, intron 5 of 13)	(GGGA)n|Simple_repeat|Simple_repeat	40054.0	NM_146119	227737.0	Mm.301646	NM_146119	ENSMUSG00000026796	Fam129b	9130404D14Rik	family with sequence similarity 129, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167623177-2	chr2	167623077	167623277	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023230, intron 1 of 3)	intron (NM_023230, intron 1 of 3)	8828.0	NM_001311146	66589.0	Mm.278783	NM_023230	ENSMUSG00000078923	Ube2v1	0610011J09Rik|AI256840|CROC-1|CROC1|D7Bwg1382e|UEV-1	ubiquitin-conjugating enzyme E2 variant 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-86110253-4	chr3	86110150	86110350	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001082414, intron 7 of 14)	intron (NM_001082414, intron 7 of 14)	25816.0	NM_001082414	27059.0	Mm.2454	NM_012059	ENSMUSG00000028082	Sh3d19	AW011754|Kryn	SH3 domain protein D19	protein-coding	4.06819506226136	3.70153124055125	3.9480024134831	3.96277095462711	4.09901929395341	3.43289617257014	3.42035545128732	3.79622009227618	-0.288152918081707	0.54541299994595	0.95633639739115
Merged-chr2-130424309-4	chr2	130424197	130424397	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030559)	promoter-TSS (NM_030559)	-9.0	NM_178762	319513.0	Mm.482539	NM_178762	ENSMUSG00000037773	Pced1a	A930025D01Rik|AI480484|Fam113a	PC-esterase domain containing 1A	protein-coding	5.33145097940505	4.03593603473969	5.11148570529542	5.0849211196607	4.68459796582213	5.36784153353583	5.03741847493461	5.07511004765979	0.0861460036288708	0.808762149207008	0.998431161219273
Merged-chr13-67108697-4	chr13	67108592	67108792	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001256052, intron 2 of 6)	intron (NM_001256052, intron 2 of 6)	5336.0	NM_001256052	432770.0	Mm.124021	NM_001256052	ENSMUSG00000074824	Rslcan18	mszf51	regulator of sex-limitation candidate 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-11088747-3	chr4	11088616	11088816	+	932.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12511.0	NM_001085493	76947.0	Mm.275265	NM_001085493	ENSMUSG00000050323	Ndufaf6	2310030N02Rik	NADH dehydrogenase (ubiquinone) complex I, assembly factor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-29179342-1	chr6	29179242	29179442	+	574.0	f0_balb.idr	intron (NM_001101443, intron 1 of 4)	CpG	242.0	NM_001101443	101359.0	Mm.22818	NM_001101443	ENSMUSG00000079654	Prrt4	AW455481|D330027H18Rik	proline-rich transmembrane protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-87761749-2	chr4	87761649	87761849	+	667.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	44574.0	NM_001286158	70122.0	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-115040165-2	chr14	115040065	115040265	+	669.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3506.0	NR_029785	723905.0		NR_029785	ENSMUSG00000065508	Mir17	Mirn17|mir-17|mmu-mir-17	microRNA 17	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-31295213-2	chr2	31295113	31295313	+	880.333374	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_019681, exon 8 of 8)	3' UTR (NM_019681, exon 8 of 8)	49290.0	NM_019681	14299.0	Mm.249318	NM_019681	ENSMUSG00000062661	Ncs1	9430075O15Rik|A730032G13Rik|AI836659|Freq|Mfreq|NCS-1	neuronal calcium sensor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-11254142-3	chr2	11254038	11254238	+	819.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008859, intron 9 of 17)	intron (NM_008859, intron 9 of 17)	81756.0	NM_008859	18761.0	Mm.329993	NM_008859	ENSMUSG00000026778	Prkcq	A130035A12Rik|AW494342|PKC-0|PKC-theta|PKCtheta|Pkcq	protein kinase C, theta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-30594354-2	chr3	30594254	30594454	+	987.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5516.0	NM_029690	76652.0	Mm.116928	NM_029690	ENSMUSG00000037737	Actrt3	1700119I24Rik|ARP-T3|Arpm1	actin related protein T3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-46434064-4	chr18	46433948	46434148	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31768.0	NR_045438	72076.0	Mm.82766	NM_028086		Mospd4	2010013H21Rik	motile sperm domain containing 4	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-5288619-3	chr15	5288542	5288742	+	640.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44455.0	NM_008965	19219.0	Mm.18509	NM_008965	ENSMUSG00000039942	Ptger4	EP4|Ptgerep4	prostaglandin E receptor 4 (subtype EP4)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-132389800-2	chr1	132389700	132389900	+	816.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_178874, intron 1 of 4)	intron (NM_178874, intron 1 of 4)	518.0	NM_001311107	68875.0	Mm.273785	NM_178874	ENSMUSG00000042066	Tmcc2	1110063G11Rik	transmembrane and coiled-coil domains 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-8569142-3	chr15	8569044	8569244	+	961.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-124681.0	NM_201232	71175.0	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	NIPBL cohesin loading factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135873937-4	chr4	135873839	135874039	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026383)	promoter-TSS (NM_026383)	-93.0	NM_026383	52830.0	Mm.29159	NM_026383	ENSMUSG00000028675	Pnrc2	0610011E17Rik|D4Bwg0593e	proline-rich nuclear receptor coactivator 2	protein-coding	5.15603912755365	4.19053364993257	5.38177948163579	4.78986095164816	4.59942626757268	4.78349517315063	5.38851478081575	4.96249795976755	0.00808746857598548	0.982273521733572	0.998431161219273
Merged-chr17-56256680-4	chr17	56256572	56256772	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010192)	promoter-TSS (NM_010192)	-121.0	NM_010192	14154.0	Mm.290813	NM_010192	ENSMUSG00000043683	Fem1a	AW611390|Fem1aa	feminization 1 homolog a (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-66449796-3	chr17	66449689	66449889	+	602.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001114098)	promoter-TSS (NM_001114098)	-39.0	NM_001114098	68617.0	Mm.33421	NM_172963	ENSMUSG00000052105	Mtcl1	1110012J17Rik|Ccdc165|D130071O13|Kiaa0802|Soga2|mKIAA0802|t8219b25	microtubule crosslinking factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-134401607-4	chr4	134401493	134401693	+	762.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285872, intron 1 of 10)	(GGGTG)n|Simple_repeat|Simple_repeat	-1319.0	NM_001285874	100163.0	Mm.22116	NM_133880	ENSMUSG00000037366	Pafah2	2310074E22Rik|AI507170	platelet-activating factor acetylhydrolase 2	protein-coding	2.68243679733133	1.93473610389376	2.7445070122964	2.96126949679863	2.17081668495732	1.94793769934598	2.06392992480661	2.14954268276669	-1.2671361813562	0.124995240387911	0.553664617588295
Merged-chr11-69661359-2	chr11	69661259	69661459	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011900, intron 1 of 6)	B2_Mm2|SINE|B2	1290.0	NR_125917	24070.0	Mm.89579	NM_011900	ENSMUSG00000018761	Mpdu1	LEC35|SL15|Supl15h	mannose-P-dolichol utilization defect 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-62511671-3	chr10	62511564	62511764	+	886.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358965, intron 1 of 3)	intron (NM_001358965, intron 1 of 3)	-3907.0	NM_011157	19073.0	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-111785702-4	chr10	111785599	111785799	+	984.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1A|DNA|hAT-Charlie	88677.0	NR_046029	629206.0	Mm.391444	NR_046029	ENSMUSG00000112533	Gm20758	-	predicted gene, 20758	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-104943098-1	chr5	104942998	104943198	+	628.0	f0_balb.idr	intron (NM_030239, intron 13 of 15)	intron (NM_030239, intron 13 of 15)	39619.0	NM_030239	27405.0	Mm.389663	NM_030239	ENSMUSG00000029299	Abcg3	Abcp2|Mxr2	ATP binding cassette subfamily G member 3	protein-coding	1.80492237162384	1.11932972976338	0.673115751659576	0.661773294229802	0.833375907816489	1.67515394800074	0.676320984730567	1.32427862336791	0.077768611076717	0.958964995197687	0.998431161219273
Merged-chr12-110590688-2	chr12	110590588	110590788	+	580.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033340)	promoter-TSS (NR_033340)	-686.0	NR_033340	319786.0	Mm.129691	NR_033340		B930059L03Rik	-	RIKEN cDNA B930059L03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-72284358-4	chr1	72284283	72284483	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175564)	promoter-TSS (NM_175564)	10.0	NM_175564	271711.0	Mm.80318	NM_175564	ENSMUSG00000026188	Tmem169	A830020B06Rik	transmembrane protein 169	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-65227882-4	chr1	65227778	65227978	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310624, intron 12 of 41)	intron (NM_001310624, intron 12 of 41)	41193.0	NM_011086	18711.0	Mm.38370	NM_011086	ENSMUSG00000025949	Pikfyve	5230400C17Rik|Pip5k|Pip5k3|Pipk5k3|PipkIII|p235	phosphoinositide kinase, FYVE type zinc finger containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70655072-4	chr11	70654961	70655161	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011072)	promoter-TSS (NM_011072)	-411.0	NM_011072	18643.0	Mm.2647	NM_011072	ENSMUSG00000018293	Pfn1	Pfn	profilin 1	protein-coding	0.681968415234257	0.395322661279542	1.35075675418242	0.37690770267354	0.690092743922201	0.397630437037527	1.3668939835832	0.378326875775424	0.0411272926488172	0.981537550259133	0.998431161219273
Merged-chr18-24245160-2	chr18	24245060	24245260	+	964.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361200, intron 3 of 12)	RMER5|LTR|ERV1	39166.0	NM_001160404	14423.0	Mm.30249	NM_013814	ENSMUSG00000000420	Galnt1	-	polypeptide N-acetylgalactosaminyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-79813973-4	chr12	79813868	79814068	+	976.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009014, exon 11 of 11)	3' UTR (NM_009014, exon 11 of 11)	110765.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70180732-2	chr14	70180632	70180832	+	709.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001271408, exon 21 of 21)	3' UTR (NM_001271408, exon 21 of 21)	-3060.0	NM_145978	213019.0	Mm.283968	NM_145978	ENSMUSG00000022090	Pdlim2	4732462F18Rik|Slim	PDZ and LIM domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-128941435-3	chr8	128941337	128941537	+	807.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPEY4_LTR|LTR|ERVK	124055.0	NM_029061	74703.0	Mm.196017	NM_029061	ENSMUSG00000025808	Ccdc7a	4930517G15Rik|4930540C21Rik|Biot2|Ccdc7	coiled-coil domain containing 7A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-79031833-2	chr11	79031733	79031933	+	554.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045873, intron 5 of 5)	MIRc|SINE|MIR	8236.0	NR_045873	790910.0	Mm.440410	NR_045873		Gm11201	-	predicted gene 11201	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152560313-2	chr1	152560213	152560413	+	558.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 4 of 17)	intron (NM_016846, intron 4 of 17)	64904.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24414596-4	chr17	24414499	24414699	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009070)	promoter-TSS (NM_009070)	-47.0	NM_001357626	19826.0	Mm.1951	NM_009070	ENSMUSG00000034681	Rnps1	-	ribonucleic acid binding protein S1	protein-coding	6.81671919737987	6.93149846056956	6.52806684461079	6.55409513166646	6.90114375691208	6.56316878883378	6.19597592274674	6.95620926949127	-0.027012877361582	0.897990675972846	0.998431161219273
Merged-chr7-45449045-2	chr7	45448945	45449145	+	956.099976	f1_balb.idr|f1_c57bl6.idr	intron (NM_030678, intron 12 of 15)	intron (NM_030678, intron 12 of 15)	10841.0	NM_010240	14325.0	Mm.30357	NM_010240	ENSMUSG00000050708	Ftl1	Ftl|Ftl-1|L-ferritin	ferritin light polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-109232072-4	chr13	109231984	109232184	+	930.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011056, intron 3 of 16)	intron (NM_011056, intron 3 of 16)	-92660.0	NR_030644	100124489.0		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-24048791-3	chr2	24048691	24048891	+	743.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_080462, exon 2 of 7)	exon (NM_080462, exon 2 of 7)	588.0	NM_080462	140483.0	Mm.33120	NM_080462	ENSMUSG00000026986	Hnmt	1500031F01Rik|AI788969	histamine N-methyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-6779804-2	chr17	6779704	6779904	+	990.0833130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_009510, intron 1 of 12)	intron (NM_009510, intron 1 of 12)	2976.0	NM_009510	22350.0	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-22156304-2	chr9	22156204	22156404	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001082532)	promoter-TSS (NM_001082532)	-542.0	NM_001082532	66268.0	Mm.28924	NM_025457	ENSMUSG00000010607	Pigyl	1810008A14Rik|PIG-Y|Pigy	phosphatidylinositol glycan anchor biosynthesis, class Y-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33346656-6	chr16	33346558	33346758	+	864.111084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	34078.0	NR_045709	100502742.0	Mm.217880	NR_045709	ENSMUSG00000097318	1700007L15Rik	linc-Iqcg|linc1609	RIKEN cDNA 1700007L15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-63430093-4	chr10	63429995	63430195	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177612)	promoter-TSS (NM_177612)	-3.0	NM_177612	216033.0	Mm.444692	NM_177612	ENSMUSG00000060843	Ctnna3	4930429L08Rik|4933408A16|Catna3|Vr22	catenin (cadherin associated protein), alpha 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-153953045-2	chr4	153952945	153953145	+	607.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	BGLII_B|LTR|ERVK	-2569.0	NR_040670	407793.0	Mm.260950	NR_040670		BC039966	-	cDNA sequence BC039966	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-97753507-2	chr7	97753410	97753610	+	611.75	f0_balb.idr|f1_balb.idr	Intergenic	B4A|SINE|B4	-15263.0	NM_175105	66333.0	Mm.29756	NM_175105	ENSMUSG00000042797	Aqp11	1700015P13Rik|AI648923|sjds	aquaporin 11	protein-coding	1.33466700045803	1.66713200857091	1.01220810413144	0.994762721340615	1.92814960679079	1.83107592596701	2.43957890610221	1.70676278777434	2.39811121814061	0.0409411292284074	0.288791675989669
Merged-chr5-125141219-4	chr5	125141065	125141265	+	909.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011424, intron 1 of 46)	intron (NM_011424, intron 1 of 46)	38049.0	NM_001253905	20602.0	Mm.278646	NM_011424	ENSMUSG00000029478	Ncor2	N-CoR|SMRT|SMRTe	nuclear receptor co-repressor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-11475208-3	chr2	11475118	11475318	+	846.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177752, intron 13 of 13)	intron (NM_001177752, intron 13 of 13)	26872.0	NM_001177754	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-13610911-2	chr6	13610811	13611011	+	717.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11A|LTR|ERVK	-2813.0	NM_028990	101118.0	Mm.254845	NM_028990	ENSMUSG00000029569	Tmem168	5730526F17Rik|8430437G11Rik|AI462344|AI504145	transmembrane protein 168	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-95571144-3	chr9	95571031	95571231	+	718.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	11314.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5922634-2	chr19	5922534	5922734	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026772, intron 1 of 1)	MIR|SINE|MIR	2182.0	NM_026772	104252.0	Mm.491103	NM_026772	ENSMUSG00000045664	Cdc42ep2	1110008C05Rik|Borg1|Cep2|D19Bwg1013e	CDC42 effector protein (Rho GTPase binding) 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-6560989-2	chr15	6560889	6561089	+	787.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Charlie1a|DNA|hAT-Charlie	-18858.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-35211084-4	chr9	35210982	35211182	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026130)	promoter-TSS (NM_026130)	-27.0	NM_001291448	235169.0	Mm.138512	NM_172291	ENSMUSG00000039048	Foxred1	BC024806|TEG-23|Tex23	FAD-dependent oxidoreductase domain containing 1	protein-coding	6.13800047043656	6.31943088550342	6.24226990317569	5.83133549665257	6.44928294560526	6.21634935715263	6.73014294112436	6.35597398143486	0.337257820090768	0.121504124521402	0.547083517037748
Merged-chr5-115554241-3	chr5	115554083	115554283	+	726.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_133915, exon 12 of 12)	3' UTR (NM_133915, exon 12 of 12)	-5284.0	NM_007475	11837.0	Mm.5286	NM_007475	ENSMUSG00000067274	Rplp0	36B4|Arbp|L10E	ribosomal protein, large, P0	protein-coding	1.53418715724339	1.72592618535703	1.00174079150674	1.72771316051464	1.90757573652732	1.02192346253476	1.67895448197016	1.50081548651754	0.141958840275953	0.907345854144368	0.998431161219273
Merged-chr1-92104179-2	chr1	92104079	92104279	+	692.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_207225, intron 2 of 26)	intron (NM_207225, intron 2 of 26)	76162.0	NM_207225	208727.0	Mm.318567	NM_207225	ENSMUSG00000026313	Hdac4	4932408F19Rik|HD4	histone deacetylase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-5706799-4	chr2	5706703	5706903	+	834.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290374, intron 1 of 9)	intron (NM_001290374, intron 1 of 9)	7959.0	NM_001290374	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-135375216-4	chr1	135375158	135375358	+	835.6357419999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175259)	promoter-TSS (NM_175259)	-195.0	NM_175259	77552.0	Mm.41407	NM_175259	ENSMUSG00000041889	Shisa4	9330132O05Rik|Tmem58|mShisa4	shisa family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-152029957-2	chr4	152029857	152030057	+	556.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_031867, intron 5 of 5)	intron (NM_031867, intron 5 of 5)	-2286.0	NM_133879	100090.0	Mm.24661	NM_133879	ENSMUSG00000028952	Zbtb48	0610011D15Rik|AI327031|Hkr3|TZAP	zinc finger and BTB domain containing 48	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117080748-2	chr11	117080648	117080848	+	691.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3400.0	NR_105853	102465258.0		NR_105853	ENSMUSG00000104740	Mir6516	mmu-mir-6516	microRNA 6516	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-115482084-2	chr8	115481984	115482184	+	586.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	224810.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-96530829-4	chr9	96530732	96530932	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52157.0	NM_001311135	19823.0	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-88701771-3	chr4	88701680	88701880	+	972.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10512.0	NM_008336	15974.0	Mm.377093	NM_008336	ENSMUSG00000100079	Ifnab	-	interferon alpha B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-50024741-4	chr17	50024634	50024834	+	959.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181397, intron 7 of 9)	intron (NM_181397, intron 7 of 9)	165763.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-47642455-1	chr9	47642355	47642555	+	567.0	f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	Lx8|LINE|L1	112103.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-34780667-4	chr2	34780555	34780755	+	977.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_145522, exon 7 of 8)	exon (NM_145522, exon 7 of 8)	8565.0	NM_022310	14828.0	Mm.330160	NM_022310	ENSMUSG00000026864	Hspa5	AL022860|AU019543|Bip|D2Wsu141e|D2Wsu17e|Grp78|Hsce70|SEZ-7|Sez7|baffled|mBiP	heat shock protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-92376489-2	chr2	92376389	92376589	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145122, intron 2 of 10)	intron (NM_145122, intron 2 of 10)	1250.0	NM_145122	18633.0	Mm.202782	NM_145122	ENSMUSG00000027222	Pex16	-	peroxisomal biogenesis factor 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-42717508-2	chr10	42717408	42717608	+	767.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38592.0	NM_172416	14628.0	Mm.46636	NM_172416	ENSMUSG00000038280	Ostm1	1200002H13Rik|HSPC019|gl	osteopetrosis associated transmembrane protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-61177129-4	chr18	61177044	61177244	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178277)	promoter-TSS (NM_178277)	-94.0	NM_134134	106894.0	Mm.22574	NM_134134	ENSMUSG00000024622	Hmgxb3	2510002C16Rik|A630042L21Rik|AI413166|mKIAA0194	HMG box domain containing 3	protein-coding	2.61899641407021	3.126610096385	1.79175428140266	2.85340830940889	2.43772840029212	2.45821210311238	2.51804601016281	3.42211316835773	0.198422088625164	0.798062436122815	0.998431161219273
Merged-chr2-73051845-2	chr2	73051745	73051945	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-71399.0	NM_001018042	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-21808274-2	chr14	21808174	21808374	+	586.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23287.0	NM_011695	22334.0	Mm.262327	NM_011695	ENSMUSG00000021771	Vdac2	Vdac6|mVDAC2|mVDAC6	voltage-dependent anion channel 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96100440-2	chr3	96100340	96100540	+	770.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-4087.0	NM_001025613	229603.0	Mm.272336	NM_001025613	ENSMUSG00000038495	Otud7b	2900060B22Rik|4930463P07Rik|AI462125|CEZANNE|Trabid2|Za20d1	OTU domain containing 7B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-10701418-2	chr17	10701318	10701518	+	830.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_027032, intron 2 of 4)	intron (NM_027032, intron 2 of 4)	138773.0	NM_027032	69310.0	Mm.18889	NM_027032	ENSMUSG00000037196	Pacrg	1700008H23Rik	PARK2 co-regulated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120305262-4	chr11	120305158	120305358	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	42155.0	NR_105900	102465564.0		NR_105900	ENSMUSG00000098955	Mir6935	Gm27344|mmu-mir-6935	microRNA 6935	ncRNA	4.36794769553306	3.7900621012183	4.38327204607374	3.93004482243923	4.40049644955522	3.81807219259998	4.41461639137499	3.88294596768567	0.0198682867674035	0.963610559948468	0.998431161219273
Merged-chr2-45191956-4	chr2	45191852	45192052	+	793.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74510.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127362610-2	chr7	127362510	127362710	+	789.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13440.0	NM_175560	269997.0	Mm.221270	NM_175560	ENSMUSG00000054381	Zfp747	6430604K15Rik	zinc finger protein 747	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-103009445-3	chr2	103009341	103009541	+	964.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER63C|DNA|hAT-Blackjack	64072.0	NM_175094	27402.0	Mm.315011	NM_175094	ENSMUSG00000010914	Pdhx	AI481367|E3bp|Pdx1	pyruvate dehydrogenase complex, component X	protein-coding	3.70186690341984	3.56972709940766	3.99737088151218	3.7155621991259	2.92367360357549	4.03718547667464	1.74322863937078	3.60051877326987	-0.647823454768307	0.309456658402319	0.810196607690797
Merged-chr17-5524193-2	chr17	5524093	5524293	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	MMERVK10D3_I-int|LTR|ERVK	31593.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-124696036-4	chr4	124695970	124696170	+	958.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2516.0	NM_026031	67205.0	Mm.259121	NM_026031	ENSMUSG00000028907	Utp11	2700082D03Rik|CGI-94|Cgi94|Utp11l	UTP11 small subunit processome component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-113078164-3	chr6	113078053	113078253	+	866.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027008)	promoter-TSS (NR_027008)	514.0	NM_028385	72895.0	Mm.367159	NM_028385	ENSMUSG00000034269	Setd5	2900045N06Rik|C330007C20|C85544|mKIAA1757	SET domain containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-4009312-4	chr18	4009184	4009384	+	988.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-156548.0	NM_026092	67328.0	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35750892-2	chr17	35750727	35750927	+	872.625	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-21623.0	NR_045459	74601.0	Mm.410840	NR_045459	ENSMUSG00000092171	4833427F10Rik	-	RIKEN cDNA 4833427F10 gene	ncRNA	-0.412513597879919	0.480156071405723	-0.402169539243659	-0.406044081734381	-0.411548195898604	-0.396049322778196	-0.401064965138675	0.0628712574342779	-1.26664666031798	0.631003877960107	1
Merged-chr13-48547325-2	chr13	48547225	48547425	+	582.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9053.0	NR_029725	387244.0		NR_029725	ENSMUSG00000065421	Mirlet7a-1	Let-7a|Mirnlet7a|Mirnlet7a-1|let-7a-1	microRNA let7a-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-56422985-6	chr19	56422826	56423026	+	914.93335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007611, intron 2 of 6)	intron (NM_007611, intron 2 of 6)	25797.0	NM_007611	12369.0	Mm.35687	NM_007611	ENSMUSG00000025076	Casp7	AI314680|CMH-1|ICE-IAP3|Mch3|caspase-7|mCASP-7	caspase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-35896351-1	chr12	35896251	35896451	+	762.0	f1_c57bl6.idr	Intergenic	Intergenic	-29270.0	NM_207531	403205.0	Mm.190508	NM_207531	ENSMUSG00000036231	Agr3	BCMP11|E030025L21Rik|Gm888	anterior gradient 3	protein-coding	3.02508403197085	3.30529201801953	3.99803868351993	2.69390985483473	2.68414301562506	2.42969007688679	3.38534346940702	2.43305712066861	-0.939337906086065	0.166960377764761	0.633180874258405
Merged-chr12-110888311-4	chr12	110888209	110888409	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081057)	promoter-TSS (NM_001081057)	836.0	NM_027223	67236.0	Mm.287157	NM_026048	ENSMUSG00000021276	Cinp	1810047K05Rik|2810452K22Rik	cyclin-dependent kinase 2 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-11176401-4	chr16	11176285	11176485	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145931)	promoter-TSS (NM_145931)	8.0	NR_027502	106205.0	Mm.226860	NM_145931	ENSMUSG00000037965	Zc3h7a	A430104C18Rik|AI447294|AW556219|HSPC055|Zc3h7|Zc3hdc7	zinc finger CCCH type containing 7 A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-34404505-2	chr14	34404405	34404605	+	655.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_153127)	TTS (NM_153127)	29001.0	NM_153127	105450.0	Mm.272673	NM_153127	ENSMUSG00000041445	Mmrn2	AA986839|ENDOGLYX1|Emilin3|EndoGlyx-1	multimerin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-115003478-2	chr2	115003383	115003583	+	577.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	340797.0	NR_040516	78193.0	Mm.189508	NR_040516	ENSMUSG00000087309	4930528P14Rik	-	RIKEN cDNA 4930528P14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123580878-3	chr5	123580781	123580981	+	849.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019765, intron 22 of 23)	intron (NM_019765, intron 22 of 23)	-7866.0	NM_029929	77573.0	Mm.41372	NM_029929	ENSMUSG00000029434	Vps33a	3830421M04Rik|AI503300|AW048546|AW554476|bf	VPS33A CORVET/HOPS core subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34598446-2	chr17	34598346	34598546	+	1000.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_073173, exon 3 of 10)	non-coding (NR_073173, exon 3 of 10)	596.0	NR_073173	11596.0	Mm.3383	NM_007425	ENSMUSG00000015452	Ager	RAGE	advanced glycosylation end product-specific receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-76392663-2	chr5	76392563	76392763	+	904.6666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28886.0	NM_019515	56183.0	Mm.154879	NM_019515	ENSMUSG00000029236	Nmu	-	neuromedin U	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-49743788-4	chr2	49743691	49743891	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008449, intron 19 of 25)	MTD|LTR|ERVL-MaLR	-43895.0	NM_027990	71897.0	Mm.41381	NM_027990	ENSMUSG00000026765	Lypd6b	2310010M24Rik|AW049525	LY6/PLAUR domain containing 6B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100430142-4	chr7	100430031	100430231	+	889.966675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001017985, exon 21 of 33)	exon (NM_001017985, exon 21 of 33)	-42860.0	NM_009464	22229.0	Mm.6254	NM_009464	ENSMUSG00000032942	Ucp3	AI645527|Slc25a9|UCP-3	uncoupling protein 3 (mitochondrial, proton carrier)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89238512-4	chr3	89238411	89238611	+	930.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039466, intron 7 of 8)	intron (NM_001039466, intron 7 of 8)	6502.0	NR_121683	360213.0	Mm.331156	NM_183037	ENSMUSG00000042766	Trim46	TRIFIC	tripartite motif-containing 46	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-68275059-4	chr10	68274927	68275127	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023598, intron 2 of 9)	intron (NM_023598, intron 2 of 9)	3699.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-93819010-1	chr11	93818910	93819110	+	549.0	f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	66756.0	NM_001013375	217109.0	Mm.379350	NM_001013375	ENSMUSG00000054079	Utp18	6230425C22Rik|6430513M13|Wdr50	UTP18 small subunit processome component	protein-coding	1.81931620290452	0.572873007760788	0.557291810076736	0.544956451780299	1.47466593087411	0.57632545638594	0.560766676477498	1.74925790235199	0.599447830725063	0.850447651248592	0.998431161219273
Merged-chr18-56569308-2	chr18	56569208	56569408	+	764.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162989, intron 1 of 4)	B4A|SINE|B4	-3563.0	NM_019996	56698.0	Mm.214569	NM_019996	ENSMUSG00000008301	Phax	2810055C14Rik|4933427L19Rik|AU018701|AU018854|D18Ertd65e|Rnuxa|p55	phosphorylated adaptor for RNA export	protein-coding	-0.690310820056369	-0.817061673343141	-0.508773674246855	-0.416652489428653	-0.825332811724703	-0.814401020769026	-0.819630299718124	-0.821985385535583	-2.95275739852426	0.288661605527303	1
Merged-chr1-157553229-4	chr1	157553140	157553340	+	999.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159986, intron 14 of 25)	intron (NM_001159986, intron 14 of 25)	27070.0	NM_001159986	89867.0	Mm.87114	NM_033354	ENSMUSG00000026589	Sec16b	Lztr2|Rgpr|Rgpr-p117	SEC16 homolog B (S. cerevisiae)	protein-coding	4.4260800198278	4.23334632610842	3.87767548855816	4.10754075823368	4.8598921023882	4.26338719244761	4.25371763160417	4.8461520985163	0.539320479593721	0.178759449263661	0.649334648917287
Merged-chr16-58408965-3	chr16	58408882	58409082	+	922.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356484, intron 1 of 15)	CpG	447.0	NM_028523	73379.0	Mm.373589	NM_028523	ENSMUSG00000035107	Dcbld2	1700055P21Rik|AW146002|CLCP1|Esdn	discoidin, CUB and LCCL domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-72914134-2	chr15	72914034	72914234	+	610.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029640, intron 15 of 21)	intron (NM_029640, intron 15 of 21)	-103810.0	NR_002864	353342.0	Mm.440245	NR_002864	ENSMUSG00000106847	Peg13	-	paternally expressed 13	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-79305265-2	chr11	79305165	79305365	+	918.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34627.0	NM_010897	18015.0	Mm.255596	NM_010897	ENSMUSG00000020716	Nf1	AW494271|Dsk9|E030030H24Rik|Mhdadsk9|Nf-1	neurofibromin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-72520756-4	chr12	72520642	72520842	+	743.145813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15615.0	NM_026327	67708.0	Mm.11233	NM_026327	ENSMUSG00000034501	Pcnx4	1810048J11Rik|4932413O10|AU017192|Pcnxl4	pecanex homolog 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-75791015-4	chr13	75790922	75791122	+	980.1416630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48863.0	NM_001360151	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	2.17199399125868	2.42899703192419	2.99417387471958	2.28521893639818	2.7104972675068	2.58890486625234	2.62732514233612	3.1451705509086	0.568578686439126	0.442824824950364	0.911647291190116
Merged-chr7-110626504-2	chr7	110626404	110626604	+	705.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1153.0	NM_009627	11535.0	Mm.1408	NM_009627	ENSMUSG00000030790	Adm	AM	adrenomedullin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-4530476-4	chr5	4530341	4530541	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	227775.0	NM_021457	14362.0	Mm.246003	NM_021457	ENSMUSG00000044674	Fzd1	AW227548|FZ-1|Fz1	frizzled class receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-95573543-3	chr9	95573504	95573704	+	813.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13787.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131019558-4	chr1	131019472	131019672	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010548)	promoter-TSS (NM_010548)	-273.0	NM_010548	16153.0	Mm.874	NM_010548	ENSMUSG00000016529	Il10	CSIF|Il-10	interleukin 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-21889616-4	chr10	21889558	21889758	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161845, intron 1 of 13)	intron (NM_001161845, intron 1 of 13)	7474.0	NM_001161845	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70069417-2	chr14	70069317	70069517	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8028.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-39415986-4	chr6	39415864	39416064	+	917.2708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018810, intron 1 of 7)	B3|SINE|B2	3812.0	NM_001311109	54484.0	Mm.270484	NM_018810	ENSMUSG00000029922	Mkrn1	RFP	makorin, ring finger protein, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-100192866-1	chr6	100192766	100192966	+	550.0	f0_balb.idr	Intergenic	Intergenic	94492.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-152367975-2	chr2	152367875	152368075	+	653.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001009948)	TTS (NM_001009948)	8591.0	NM_001009948	228777.0	Mm.330667	NM_001009948	ENSMUSG00000059361	Nrsn2	Gm123|Neurensin-2	neurensin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-89462024-4	chr10	89461905	89462105	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009108, intron 7 of 8)	intron (NM_009108, intron 7 of 8)	-18038.0	NM_001033331	237436.0	Mm.11982	NM_001033331	ENSMUSG00000074802	Gas2l3	8430435B07Rik|Gm240	growth arrest-specific 2 like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-130629948-4	chr2	130629824	130630024	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001255993, exon 1 of 7)	5' UTR (NM_001255993, exon 1 of 7)	103.0	NM_198176	380601.0	Mm.27090	NM_198176	ENSMUSG00000079043	Fastkd5	C78212|mKIAA1792	FAST kinase domains 5	protein-coding	3.82364373133955	4.07600222473305	4.62664481175282	4.02431316380814	4.25215632381261	3.95497416873293	4.61722718872474	2.71248393141459	-0.160791425298398	0.752502768551364	0.998431161219273
Merged-chr8-69907963-2	chr8	69907865	69908065	+	662.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_145596, exon 13 of 13)	3' UTR (NM_145596, exon 13 of 13)	-5407.0	NM_023312	67184.0	Mm.21162	NM_023312	ENSMUSG00000036199	Ndufa13	2700054G14Rik|AU022060|CDA016|CGI-39|GRIM-19|Grim19	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 13	protein-coding	0.251508206566279	0.266667344235551	0.261652177986779	0.532507502799364	0.496910377051013	0.832549933555068	0.875712229491343	0.258483452904058	2.56953762055131	0.197787137746434	1
Merged-chr17-26511525-3	chr17	26511414	26511614	+	850.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3042.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	2.54719370693896	2.46523615844225	2.52357479454018	3.19629537706689	3.12591767000063	2.99265836930742	1.54733088487513	3.27903828253914	0.319439720231825	0.684462843375855	0.996533206832645
Merged-chr9-83834572-4	chr9	83834450	83834650	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009445)	promoter-TSS (NM_009445)	-139.0	NM_009445	22137.0	Mm.1904	NM_009445	ENSMUSG00000038379	Ttk	AL022661|Esk1|Mps1|PYT|esk	Ttk protein kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-36028724-2	chr8	36028646	36028846	+	718.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66082.0	NM_172911	244418.0	Mm.244971	NM_172911	ENSMUSG00000050271	Prag1	9830148H23|D8Ertd82e|NACK|Sgk223|mFLJ00269	PEAK1 related kinase activating pseudokinase 1	protein-coding	2.21986650022335	2.87705637482398	1.40456204186066	3.69346952244058	2.8291506064257	1.75834665730136	2.79910349087978	2.48978538830785	-0.542813464592747	0.541933302726919	0.954866069207078
Merged-chr4-48492716-3	chr4	48492605	48492805	+	760.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19242.0	NM_001355740	269536.0	Mm.272025	NM_172304	ENSMUSG00000028345	Tex10	2610206N19Rik|2810462N03Rik|BC006867	testis expressed gene 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46432073-2	chr8	46431973	46432173	+	736.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38964.0	NM_007981	14081.0	Mm.210323	NM_007981	ENSMUSG00000018796	Acsl1	Acas|Acas1|Acs|FACS|Facl2|LACS 1|LACS1	acyl-CoA synthetase long-chain family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65527956-2	chr9	65527856	65528056	+	618.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	52131.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-7786303-2	chr9	7786203	7786403	+	752.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_152989, intron 3 of 5)	intron (NR_152989, intron 3 of 5)	1913.0	NR_049191	100885830.0		NR_049191	ENSMUSG00000093615	Mir5618	Gm23685|mmu-mir-5618	microRNA 5618	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-96476372-2	chr7	96476272	96476472	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011858, intron 3 of 32)	MTE2a|LTR|ERVL-MaLR	-134408.0	NR_046043	670727.0	Mm.421352	NR_046043	ENSMUSG00000085751	Gm15412	-	predicted gene 15412	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-120632189-4	chr2	120632098	120632298	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22603.0	NM_001290807	66296.0	Mm.221900	NM_025475	ENSMUSG00000027285	Haus2	1700101G24Rik|2410007P03Rik|AU020217|Cep27	HAUS augmin-like complex, subunit 2	protein-coding	5.45995868137207	4.8507110312564	5.43700620027252	5.30689817592783	5.41004396290171	4.9800248624332	4.68146159045664	5.74212314538705	-0.0214469730994714	0.947267704677898	0.998431161219273
Merged-chr6-43645352-3	chr6	43645248	43645448	+	969.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013861, intron 2 of 8)	intron (NM_013861, intron 2 of 8)	20930.0	NM_013861	29807.0	Mm.320979	NM_013861	ENSMUSG00000029735	Tpk1	-	thiamine pyrophosphokinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-82439931-2	chr17	82439831	82440031	+	658.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3C|LINE|L1	638294.0	NR_045094	100503434.0	Mm.187281	NR_045094		Gm19689	-	predicted gene, 19689	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-27448648-2	chr3	27448548	27448748	+	625.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356953, intron 23 of 26)	intron (NM_001356953, intron 23 of 26)	77297.0	NM_177330	208188.0	Mm.194721	NM_177330	ENSMUSG00000051136	Ghsr	C530020I22Rik|GHRP|GHS-R|Ghsr1a	growth hormone secretagogue receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-62754035-2	chr12	62753935	62754135	+	626.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	66248.0	NR_131949	73309.0	Mm.276558	NR_131949		Spanxn4	1700047L15Rik	SPANX family, member N4	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-21595166-2	chr16	21595066	21595266	+	859.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081366, intron 44 of 46)	intron (NM_001081366, intron 44 of 46)	99499.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-60344323-4	chr10	60344219	60344419	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252635, intron 37 of 68)	intron (NM_001252635, intron 37 of 68)	-2532.0	NM_001159572	74048.0	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5625505-4	chr19	5625395	5625595	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4|LINE|L1	-11995.0	NM_009045	19697.0	Mm.249966	NM_009045	ENSMUSG00000024927	Rela	p65	v-rel reticuloendotheliosis viral oncogene homolog A (avian)	protein-coding	1.87108433395461	1.40870541546996	3.05918539925243	2.83330031252929	2.27080789959211	2.55362299444193	1.86251600745268	2.68629811808633	-0.200485800552766	0.825856248100291	0.998431161219273
Merged-chr4-56070885-4	chr4	56070782	56070982	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR78|LTR|ERV1	-538407.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-107949833-4	chr5	107949734	107949934	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026062, intron 1 of 4)	MTE2a|LTR|ERVL-MaLR	37243.0	NM_026062	67266.0	Mm.277897	NM_026062	ENSMUSG00000029270	Fam69a	2900024C23Rik|AI315274	family with sequence similarity 69, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-4217221-2	chr12	4217121	4217321	+	648.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_134046, exon 4 of 7)	exon (NM_134046, exon 4 of 7)	16744.0	NM_134046	52504.0	Mm.70546	NM_134046	ENSMUSG00000020652	Cenpo	2810429O05Rik|8430427C03Rik|D12Ertd482e	centromere protein O	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52062664-2	chr13	52062564	52062764	+	922.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34077.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80417366-2	chr10	80417266	80417466	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001164151, exon 10 of 19)	exon (NM_001164151, exon 10 of 19)	-10545.0	NM_025650	66594.0	Mm.379119	NM_025650	ENSMUSG00000020163	Uqcr11	0710008D09Rik|AL022707|Uqcr	ubiquinol-cytochrome c reductase, complex III subunit XI	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-48869553-2	chr11	48869453	48869653	+	893.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008326, intron 1 of 2)	intron (NM_008326, intron 1 of 2)	1867.0	NM_001355757	15944.0	Mm.29938	NM_008326	ENSMUSG00000046879	Irgm1	Ifggd3|Ifi1|Iigp3|Iipg3|Irgm	immunity-related GTPase family M member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-125441866-4	chr1	125441763	125441963	+	994.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6136.0	NM_001205385	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-84389098-4	chr12	84389017	84389217	+	961.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001026214, intron 6 of 15)	intron (NM_001026214, intron 6 of 15)	11817.0	NM_001286058	12499.0	Mm.10211	NM_007647	ENSMUSG00000021236	Entpd5	AI196558|AI987697|Cd39l4|ER-UDPase|NTPDase-5|NTPDase5|Pcph|mNTPase	ectonucleoside triphosphate diphosphohydrolase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45468292-2	chr7	45468192	45468392	+	622.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-1394.0	NM_007527	12028.0	Mm.19904	NM_007527	ENSMUSG00000003873	Bax	-	BCL2-associated X protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-44267066-4	chr19	44266956	44267156	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-26620.0	NM_009128	20250.0	Mm.487021	NM_009128	ENSMUSG00000025203	Scd2	Mir5114|Scd-2|mir-5114|swty	stearoyl-Coenzyme A desaturase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-140453410-2	chr3	140453310	140453510	+	869.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2B2|LINE|L1	425161.0	NR_105798	102465198.0		NR_105798	ENSMUSG00000099169	Mir7j	Gm27716|Mirlet7j|mmu-let-7j	microRNA 7j	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-62169808-1	chr15	62169708	62169908	+	591.0	f0_c57.idr	intron (NR_003368, intron 4 of 8)	intron (NR_003368, intron 4 of 8)	49643.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167840514-2	chr2	167840414	167840614	+	673.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-91813.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-99207265-2	chr10	99207165	99207365	+	627.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-55966.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-10183885-2	chr5	10183785	10183985	+	829.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20B2|LTR|ERVK	-458533.0	NM_181850	108069.0	Mm.318966	NM_181850	ENSMUSG00000003974	Grm3	0710001G23Rik|Gprc1c|mGlu3|mGluR3	glutamate receptor, metabotropic 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128487355-2	chr10	128487255	128487455	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001114096, exon 27 of 29)	exon (NM_001114096, exon 27 of 29)	5654.0	NM_001317220	17904.0	Mm.337074	NM_010860	ENSMUSG00000090841	Myl6	ESMLC|LC17|LC17-GI|MLC-3|MLC1SM|Myln	myosin, light polypeptide 6, alkali, smooth muscle and non-muscle	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-57439286-2	chr9	57439186	57439386	+	640.666626	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_152144, exon 2 of 8)	non-coding (NR_152144, exon 2 of 8)	450.0	NM_001357913	66812.0	Mm.250508	NM_176831	ENSMUSG00000063849	Ppcdc	1810057I13Rik|8430432M10Rik	phosphopantothenoylcysteine decarboxylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-4973176-3	chr12	4973082	4973282	+	875.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362349, intron 15 of 27)	intron (NM_001362349, intron 15 of 27)	55829.0	NM_001362349	320817.0	Mm.210966	NM_001099628	ENSMUSG00000052812	Atad2b	1110014E10Rik|BC032887|C79189|D530031C13Rik	ATPase family, AAA domain containing 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-123005416-2	chr10	123005316	123005516	+	586.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163024, intron 32 of 34)	intron (NM_001163024, intron 32 of 34)	-19692.0	NR_029527	387251.0		NR_029527	ENSMUSG00000065406	Mirlet7i	Mirnlet7i|let-7i|mmu-let-7i	microRNA let7i	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-45883210-3	chr13	45883172	45883372	+	690.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199304, intron 2 of 6)	intron (NM_001199304, intron 2 of 6)	81719.0	NM_001199304	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95526798-4	chr3	95526698	95526898	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001267695)	promoter-TSS (NM_001267695)	12.0	NM_001267695	13040.0	Mm.3619	NM_021281	ENSMUSG00000038642	Ctss	Cats	cathepsin S	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27737971-2	chr2	27737871	27738071	+	674.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290481, intron 2 of 9)	intron (NM_001290481, intron 2 of 9)	27388.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-11180574-2	chr8	11180474	11180674	+	688.416626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-132231.0	NM_009932	12827.0	Mm.181021	NM_009932	ENSMUSG00000031503	Col4a2	Col4a-2	collagen, type IV, alpha 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85993101-3	chr12	85993007	85993207	+	807.033325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347395, intron 29 of 32)	intron (NM_001347395, intron 29 of 32)	85934.0	NM_009368	21809.0	Mm.3992	NM_009368	ENSMUSG00000021253	Tgfb3	TGF-beta-3|Tgfb-3	transforming growth factor, beta 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-101147079-2	chr4	101146979	101147179	+	605.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_183024, intron 11 of 11)	intron (NM_183024, intron 11 of 11)	78041.0	NM_183024	242570.0	Mm.185636	NM_183024	ENSMUSG00000035275	Raver2	A430091O22Rik	ribonucleoprotein, PTB-binding 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111036393-4	chr12	111036294	111036494	+	969.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3404.0	NM_198023	217864.0	Mm.23808	NM_198023	ENSMUSG00000037896	Rcor1	5730409O11|6720480E22Rik|AU042633|D12Wsu95e|Rocr1|mKIAA0071	REST corepressor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69879933-2	chr11	69879833	69880033	+	678.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_153143, exon 1 of 1)	exon (NM_153143, exon 1 of 1)	1052.0	NM_153143	216858.0	Mm.239498	NM_153143	ENSMUSG00000046731	Kctd11	AF465352|Ren	potassium channel tetramerisation domain containing 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-126436351-4	chr3	126436259	126436459	+	956.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173451, intron 1 of 1)	intron (NM_173451, intron 1 of 1)	72507.0	NM_173451	271970.0	Mm.317021	NM_173451	ENSMUSG00000046561	Arsj	9330196J05Rik|D830047F08	arylsulfatase J	protein-coding	0.415315740216408	1.59666254023347	1.30760353580569	0.434830945451324	0.418268250047656	0.463833757000701	1.62904423677816	0.436840815794428	-0.651157983659415	0.840734148790765	0.998431161219273
Merged-chr9-56891622-4	chr9	56891516	56891716	+	870.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139001, intron 5 of 9)	intron (NM_139001, intron 5 of 9)	26512.0	NM_139001	121021.0	Mm.41329	NM_139001	ENSMUSG00000032911	Cspg4	4732461B14Rik|AN2|NG2	chondroitin sulfate proteoglycan 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-66081751-2	chr5	66081651	66081851	+	705.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_139065, intron 2 of 6)	intron (NM_139065, intron 2 of 6)	16428.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-32173960-1	chr14	32173860	32174060	+	1000.0	f0_balb.idr	intron (NM_001033988, intron 6 of 9)	RSINE1|SINE|B4	8171.0	NM_019744	27057.0	Mm.371598	NM_019744	ENSMUSG00000056234	Ncoa4	ARA70|Rfg	nuclear receptor coactivator 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-90226312-2	chr11	90226212	90226412	+	718.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-23164.0	NM_026178	67468.0	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-96606167-3	chr10	96606076	96606276	+	877.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10825.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-37744089-7	chr3	37743981	37744181	+	961.4285890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19721.0	NM_198657	381438.0	Mm.490549	NM_198657	ENSMUSG00000058174	Gm5148	EG381438	predicted gene 5148	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33372782-3	chr16	33372680	33372880	+	738.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	7956.0	NR_045709	100502742.0	Mm.217880	NR_045709	ENSMUSG00000097318	1700007L15Rik	linc-Iqcg|linc1609	RIKEN cDNA 1700007L15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70102201-2	chr14	70102101	70102301	+	781.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021328, intron 1 of 8)	intron (NM_021328, intron 1 of 8)	2108.0	NM_001360404	57784.0	Mm.24186	NM_021328	ENSMUSG00000022089	Bin3	1700015F07Rik	bridging integrator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-83855850-4	chr3	83855758	83855958	+	912.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20A3_MM|LTR|ERVK	-14250.0	NM_011905	24088.0	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-121104988-4	chr3	121104884	121105084	+	899.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	66711.0	NM_028456	66568.0	Mm.263163	NM_025637	ENSMUSG00000028133	Rwdd3	2510027J23Rik|3110037C01Rik|AI035684|AI662458|Rsume|X2CR1	RWD domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34057426-3	chr17	34057319	34057519	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001317722, exon 36 of 65)	exon (NM_001317722, exon 36 of 65)	18281.0	NM_001317722	12815.0	Mm.20230	NM_009926	ENSMUSG00000024330	Col11a2	-	collagen, type XI, alpha 2	protein-coding	5.34374743245256	4.61293054057595	3.98890636740319	4.47944877310769	3.4239944416545	1.80590910342844	2.84004637046008	2.88022581252598	-2.55520942035353	5.38984172471559e-06	0.000270952462345549
Merged-chr10-17919210-3	chr10	17919112	17919312	+	692.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033432, intron 1 of 3)	intron (NM_001033432, intron 1 of 3)	28855.0	NM_001033432	380629.0	Mm.276430	NM_001033432	ENSMUSG00000039879	Heca	Gm869|HDC|HDCL	hdc homolog, cell cycle regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99550539-1	chr7	99550439	99550639	+	937.0	f1_c57bl6.idr	intron (NM_178220, intron 1 of 14)	ORR1D1|LTR|ERVL-MaLR	-1730.0	NR_029760	723840.0		NR_029760	ENSMUSG00000065571	Mir326	Mirn326|mir-326|mmu-mir-326	microRNA 326	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-21169841-4	chr13	21169740	21169940	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10091.0	NM_009054	19720.0	Mm.314056	NM_009054	ENSMUSG00000021326	Trim27	AW538890|Gm19403|Rfp	tripartite motif-containing 27	protein-coding	4.24471463790855	4.41456179875049	4.10061590843037	3.71287855355869	4.64390836905663	3.9820805207875	4.51011931470218	3.27385355522682	0.0925427204689279	0.843133619370944	0.998431161219273
Merged-chr10-39493212-2	chr10	39493112	39493312	+	874.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001122893, intron 3 of 13)	intron (NM_001122893, intron 3 of 13)	-119722.0	NM_134000	103213.0	Mm.436686	NM_134000	ENSMUSG00000019842	Traf3ip2	AI429613|Act1|CIKS	TRAF3 interacting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-10982741-4	chr16	10982633	10982833	+	904.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019980, intron 1 of 3)	L2b|LINE|L2	10388.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-55358547-2	chr13	55358447	55358647	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025828, intron 2 of 7)	B4|SINE|B4	4236.0	NM_025828	66890.0	Mm.38868	NM_025828	ENSMUSG00000021484	Lman2	1110003H06Rik|1300009F09Rik|AA408240|AL023023|AU040819|GP36B|VIP36	lectin, mannose-binding 2	protein-coding	0.568301238438524	0.193495287777104	0.529445191445924	0.181118166133033	0.173443361423734	0.195062456781392	1.08345368324709	0.506480364776954	1.05855166930439	0.587680280433291	1
Merged-chr4-155234262-6	chr4	155234109	155234309	+	804.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11674.0	NM_001357191	20481.0	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	1.73736078780682	2.66863938977962	2.73492342992517	2.10242293008467	1.7515583370757	2.2604455450221	1.89746994451074	1.23120461076946	-1.33737462432909	0.167180260613427	0.633286287152144
Merged-chr1-181237505-3	chr1	181237398	181237598	+	919.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25520.0	NM_145514	226757.0	Mm.289082	NM_145514	ENSMUSG00000038733	Wdr26	1600024A01Rik|AA693241|AI447817|AU044014|C77982|Gid7	WD repeat domain 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-192759633-3	chr1	192759527	192759727	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144881, intron 2 of 11)	intron (NM_144881, intron 2 of 11)	11592.0	NM_144881	226861.0	Mm.145857	NM_144881	ENSMUSG00000037375	Hhat	2810432O22Rik|AI462858|AP-2CRE|Skn|Tg(TFAP2A-cre)1Will	hedgehog acyltransferase	protein-coding	3.02884600797015	3.69175539036476	2.33084270267924	3.75751454142591	2.97292417824715	2.61049967618046	2.35014543080586	3.28660925596528	-0.782708618034354	0.251951319467467	0.749776101430909
Merged-chr18-75344523-2	chr18	75344423	75344623	+	743.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22565.0	NR_155535	102636262.0	Mm.421168	NR_155535		Gm20544	-	predicted gene 20544	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101181260-2	chr15	101181160	101181360	+	923.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007395, intron 1 of 8)	intron (NM_007395, intron 1 of 8)	7188.0	NM_007395	11479.0	Mm.308467	NM_007395	ENSMUSG00000000532	Acvr1b	6820432J04|ALK-4|ActR-IB|ActRIB|Acvrlk4|Alk4|SKR2	activin A receptor, type 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-99169177-6	chr10	99169092	99169292	+	963.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153333, intron 11 of 12)	intron (NR_153333, intron 11 of 12)	61057.0	NM_015737	14426.0	Mm.314	NM_015737	ENSMUSG00000090035	Galnt4	AV011803	polypeptide N-acetylgalactosaminyltransferase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-120247620-4	chr10	120247494	120247694	+	862.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20534.0	NM_025431	66225.0	Mm.291755	NM_025431	ENSMUSG00000020224	Llph	1190005P17Rik	LLP homolog, long-term synaptic facilitation (Aplysia)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-52743051-2	chr2	52742951	52743151	+	948.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019667)	promoter-TSS (NM_019667)	-902.0	NM_019667	56324.0	Mm.263639	NM_019667	ENSMUSG00000055371	Stam2	1200004O12Rik|5730456G07Rik|BB145015|Hbp	signal transducing adaptor molecule (SH3 domain and ITAM motif) 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-19568922-2	chr4	19568822	19569022	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027769, intron 1 of 15)	MIRb|SINE|MIR	1186.0	NM_027769	70568.0	Mm.38390	NM_027769	ENSMUSG00000028228	Cpne3	5430428M23Rik|5730450C07Rik|C85108|CPN3	copine III	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106660823-4	chr11	106660731	106660931	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001032378, intron 13 of 13)	intron (NM_001032378, intron 13 of 13)	-47901.0	NM_198292	21763.0	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166097619-2	chr2	166097519	166097719	+	731.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252579, intron 3 of 20)	ORR1E|LTR|ERVL-MaLR	57666.0	NM_001355619	72043.0	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-96915079-2	chr11	96914979	96915179	+	885.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_030248, intron 2 of 13)	intron (NM_030248, intron 2 of 13)	1435.0	NM_001308183	80280.0	Mm.28297	NM_030248	ENSMUSG00000018669	Cdk5rap3	1810007E24Rik|BC002318|C53|C81486|HSF-27|IC53|LZAP|MST016	CDK5 regulatory subunit associated protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-28570551-2	chr2	28570451	28570651	+	708.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_148928, intron 7 of 11)	intron (NM_148928, intron 7 of 11)	-7148.0	NM_009885	12613.0	Mm.236017	NM_009885	ENSMUSG00000026818	Cel	1810036E18Rik|BAL	carboxyl ester lipase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-29736393-3	chr5	29736288	29736488	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028426)	promoter-TSS (NR_028426)	-452.0	NR_028426	332993.0	Mm.473746	NR_028426		Gm5129	EG332993	predicted gene 5129	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-93780827-4	chr16	93780730	93780930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357118, intron 23 of 35)	intron (NM_001357118, intron 23 of 35)	14071.0	NR_151466	102633000.0	Mm.443436	NR_151466		2310043M15Rik	-	RIKEN cDNA 2310043M15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3391555-4	chr12	3391462	3391662	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008445, intron 5 of 7)	intron (NM_008445, intron 5 of 7)	26430.0	NM_008445	16570.0	Mm.7688	NM_008445	ENSMUSG00000020668	Kif3c	mKIAA4058	kinesin family member 3C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-121054719-1	chr6	121054619	121054819	+	599.0	f1_balb.idr	intron (NM_001270475, intron 1 of 31)	intron (NM_001270475, intron 1 of 31)	-9745.0	NR_138098	100043793.0	Mm.448053	NR_138098		Gm4651	-	predicted gene 4651	ncRNA	2.83618128774216	1.33994692379871	1.3026589366382	2.70610524263627	2.797478072129	2.22582144833967	2.80931209650861	1.746617899723	0.429807204594033	0.669240912199092	0.993577811443337
Merged-chr11-44425942-3	chr11	44425813	44426013	+	881.833374	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25850.0	NM_001303244	16160.0	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	1.19024534340187	0.605743465571414	0.790362282503267	1.17013964909933	0.576043352989705	1.3967341604601	0.597745990537842	1.17783196923963	0.136661633081785	0.931609148259244	0.998431161219273
Merged-chr16-57555125-4	chr16	57555030	57555230	+	956.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177871, intron 1 of 1)	intron (NM_001177871, intron 1 of 1)	5888.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	1.60552909718059	2.37369159035195	2.66982226456021	3.27690967124636	2.12958222422756	2.39139984333432	2.69094703662045	3.03798925914173	-0.0365149169780193	0.964781153197902	0.998431161219273
Merged-chr1-89940582-4	chr1	89940488	89940688	+	855.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9412.0	NM_010262	14472.0	Mm.204730	NM_010262	ENSMUSG00000034486	Gbx2	D130058E05Rik|Gbx-2|MMoxA|Stra7	gastrulation brain homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-121409073-4	chr5	121408968	121409168	+	876.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172722, intron 3 of 23)	intron (NM_172722, intron 3 of 23)	11086.0	NM_172722	231713.0	Mm.33919	NM_172722	ENSMUSG00000042719	Naa25	4833422K13Rik|A630046C11|AI450868|C330023M02Rik|Mdm20	N(alpha)-acetyltransferase 25, NatB auxiliary subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105965590-4	chr8	105965479	105965679	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045594, intron 1 of 23)	intron (NR_045594, intron 1 of 23)	536.0	NM_001253804	20498.0	Mm.292447	NM_009195	ENSMUSG00000017765	Slc12a4	AW546649|KCC1|RBCKCC1	solute carrier family 12, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-8345045-3	chr12	8344934	8345134	+	822.638855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31601.0	NM_021429	58240.0	Mm.309954	NM_021429	ENSMUSG00000020605	Hs1bp3	-	HCLS1 binding protein 3	protein-coding	2.41115641439803	1.73599024813896	2.90261928563458	1.38108789662903	2.84455065367544	2.7335217074184	3.08194763860187	2.32634423475187	1.06059443250805	0.221760275949479	0.713546366664184
Merged-chr7-24082222-1	chr7	24082122	24082322	+	1000.0	f0_c57.idr	5' UTR (NM_001045486, exon 1 of 5)	5' UTR (NM_001045486, exon 1 of 5)	325.0	NM_001289637	210135.0	Mm.32254	NM_172483	ENSMUSG00000057101	Zfp180	2310040I01Rik|AI852378|D130011P11|HHZ168	zinc finger protein 180	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-19840123-2	chr14	19840023	19840223	+	875.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_105025, intron 1 of 2)	intron (NR_105025, intron 1 of 2)	1198.0	NR_105025	52512.0	Mm.483998	NR_105025	ENSMUSG00000114350	D14Ertd670e	-	DNA segment, Chr 14, ERATO Doi 670, expressed	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114852537-4	chr11	114852401	114852601	+	897.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_147217, intron 1 of 3)	CpG	471.0	NM_147217	70355.0	Mm.242413	NM_147217	ENSMUSG00000051043	Gprc5c	1110028I06Rik|3200002M13Rik|Raig3	G protein-coupled receptor, family C, group 5, member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140830032-2	chr5	140829932	140830132	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_010302, exon 1 of 4)	exon (NM_010302, exon 1 of 4)	399.0	NM_010302	14673.0	Mm.370185	NM_010302	ENSMUSG00000000149	Gna12	AI414047|AI504261|Galpha12	guanine nucleotide binding protein, alpha 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-40631343-4	chr9	40631232	40631432	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-54632.0	NM_133733	71566.0	Mm.280560	NM_133733	ENSMUSG00000032024	Clmp	9030425E11Rik|ACAM|ASP5|AW557819	CXADR-like membrane protein	protein-coding	4.40282228036294	4.20992239481019	4.07328776566328	4.35373992641185	4.39637273014168	4.17052609148881	3.72070971082447	4.74861596930691	0.0630756194428821	0.880063734800959	0.998431161219273
Merged-chr1-37308816-4	chr1	37308703	37308903	+	998.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030266, intron 1 of 25)	intron (NM_030266, intron 1 of 25)	8965.0	NM_001290797	269180.0	Mm.5294	NM_030266	ENSMUSG00000026113	Inpp4a	107kDa|9630012D15|D130048C09Rik|R74740	inositol polyphosphate-4-phosphatase, type I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-101670600-3	chr4	101670505	101670705	+	634.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR49|LTR|ERVK	22822.0	NM_175036	230514.0	Mm.4756	NM_175036	ENSMUSG00000035212	Leprot	LEPR|OB-RGRP|Obrgrp|VPS55	leptin receptor overlapping transcript	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-83998456-4	chr8	83998357	83998557	+	985.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081415, exon 1 of 5)	exon (NM_001081415, exon 1 of 5)	785.0	NM_001081415	666704.0	Mm.298091	NM_001081415	ENSMUSG00000079003	Samd1	AA589507	sterile alpha motif domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-99130815-4	chr10	99130704	99130904	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153333, intron 4 of 12)	intron (NR_153333, intron 4 of 12)	22669.0	NM_015737	14426.0	Mm.314	NM_015737	ENSMUSG00000090035	Galnt4	AV011803	polypeptide N-acetylgalactosaminyltransferase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-11550756-4	chr8	11550619	11550819	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024248)	promoter-TSS (NM_024248)	52.0	NM_024248	71941.0	Mm.196576	NM_024248	ENSMUSG00000056228	Cars2	2310051N18Rik|2410044A07Rik|D530030H10Rik|cysRS	cysteinyl-tRNA synthetase 2 (mitochondrial)(putative)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-121871203-6	chr5	121871077	121871277	+	913.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007804, intron 17 of 22)	intron (NM_007804, intron 17 of 22)	22180.0	NM_001359949	231717.0	Mm.12654	NM_175474	ENSMUSG00000044134	Fam109a	A230106M15Rik|AU017694|IPIP27A|Ses1	family with sequence similarity 109, member A	protein-coding	0.74619478935954	0.789206181140409	1.65287117080544	1.26591778891196	1.20629866626813	0.79228674601577	1.66844852998374	1.50772885144836	0.601146878330624	0.677052987318679	0.994620498390277
Merged-chr8-72303326-2	chr8	72303226	72303426	+	733.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15736.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-112264167-2	chr2	112264067	112264267	+	787.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-2147.0	NM_133649	107723.0	Mm.491155	NM_133648	ENSMUSG00000027130	Slc12a6	9530023I19Rik|KCC3|gaxp	solute carrier family 12, member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-24587006-3	chr7	24586902	24587102	+	884.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023154)	promoter-TSS (NM_023154)	-541.0	NM_023154	66071.0	Mm.29553	NM_023154	ENSMUSG00000064254	Ethe1	0610025L15Rik|Hsco	ethylmalonic encephalopathy 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-3373155-4	chr13	3373099	3373299	+	973.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-105104.0	NR_015522	76937.0	Mm.487240	NR_015522	ENSMUSG00000097709	2810429I04Rik	AI256682	RIKEN cDNA 2810429I04 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180389441-2	chr1	180389341	180389541	+	923.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081175, intron 2 of 7)	intron (NM_001081175, intron 2 of 7)	-58892.0	NR_003623	277333.0	Mm.389223	NM_199472		Gm5069	EG277333	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-152151566-2	chr4	152151466	152151666	+	618.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_207687, intron 1 of 15)	intron (NM_207687, intron 1 of 15)	641.0	NM_207687	56226.0	Mm.264215	NM_019585	ENSMUSG00000028943	Espn	je	espin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70280872-1	chr8	70280772	70280972	+	663.0	f1_balb.idr	Intergenic	B1_Mur1|SINE|Alu	-2127.0	NM_011984	26558.0	Mm.388127	NM_011984	ENSMUSG00000003573	Homer3	AW146114	homer scaffolding protein 3	protein-coding	0.216247741694557	-0.0474263625745243	-0.0533075434059295	-0.0578609980694965	-0.0643206080659383	0.717235876578616	0.553055112500492	-0.0570644884189837	2.49805054817231	0.274046368038266	1
Merged-chr3-40798714-4	chr3	40798610	40798810	+	887.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-1241.0	NM_173169	20873.0	Mm.3794	NM_011495	ENSMUSG00000025758	Plk4	1700028H20|AI385771|Sak|Stk18	polo like kinase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127103836-4	chr10	127103714	127103914	+	881.19165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177614, intron 5 of 13)	intron (NM_177614, intron 5 of 13)	17346.0	NM_177614	216440.0	Mm.295246	NM_177614	ENSMUSG00000040462	Os9	4632413K17Rik|AU022351	amplified in osteosarcoma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-25447969-2	chr10	25447869	25448069	+	884.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358754, intron 3 of 16)	intron (NM_001358754, intron 3 of 16)	39601.0	NM_013511	13822.0	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3382474-2	chr19	3382374	3382574	+	665.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013495, intron 18 of 18)	PB1D11|SINE|Alu	-6383.0	NM_001039658	17771.0	Mm.209941	NM_010841	ENSMUSG00000024905	Tesmin	Mtl5	testis expressed metallothionein like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139796099-2	chr5	139795999	139796199	+	713.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_010757, intron 1 of 2)	intron (NM_010757, intron 1 of 2)	4563.0	NM_010757	17135.0	Mm.157313	NM_010757	ENSMUSG00000018143	Mafk	AW061068|NF-E2|Nfe2u	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein K (avian)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59517039-3	chr15	59516934	59517134	+	764.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026746, intron 4 of 6)	intron (NM_026746, intron 4 of 6)	-131620.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-73177336-4	chr15	73177236	73177436	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153178, intron 1 of 18)	L3b|LINE|CR1	7611.0	NM_153178	239528.0	Mm.23095	NM_153178	ENSMUSG00000036698	Ago2	1110029L17Rik|2310051F07Rik|AI225898|AL022874|AW546247|Eif2c2|Gerp95|Gm10365|mKIAA4215	argonaute RISC catalytic subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128795364-2	chr2	128795264	128795464	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 18 of 18)	intron (NM_008587, intron 18 of 18)	-22939.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-113307787-4	chr6	113307684	113307884	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001282128, intron 1 of 13)	intron (NM_001282128, intron 1 of 13)	647.0	NM_001282126	78783.0	Mm.356059	NM_030178	ENSMUSG00000001632	Brpf1	4833438B11Rik|4930540D11Rik|Brpf2	bromodomain and PHD finger containing, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-23668568-2	chr9	23668468	23668668	+	697.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR44B|LTR|ERVK	-429450.0	NM_175678	319239.0	Mm.130824	NM_175678	ENSMUSG00000043659	Npsr1	9330128H10Rik|GPRA|Gpr154|MVTR|PGR14|VRR1	neuropeptide S receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131527645-4	chr1	131527545	131527745	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175382)	promoter-TSS (NM_175382)	-258.0	NM_175382	108900.0	Mm.31278	NM_175382	ENSMUSG00000055184	Fam72a	2700049P18Rik|P17	family with sequence similarity 72, member A	protein-coding	6.97668326878222	6.95602684541324	7.48287307281772	6.90298305812726	7.0497305468556	6.6837306673609	7.41087564162211	7.34958969454122	0.0579466416143534	0.770235043452723	0.998431161219273
Merged-chr10-96377738-4	chr10	96377631	96377831	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	151524.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-54756556-4	chr14	54756413	54756613	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016972, intron 3 of 10)	intron (NM_016972, intron 3 of 10)	25373.0	NM_016972	50934.0	Mm.276831	NM_016972	ENSMUSG00000022180	Slc7a8	AA408822|LAT2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	protein-coding	6.82753522433427	6.62263165801371	6.94076019888475	6.26531895975111	6.57439187355666	5.63392194013881	6.45958998599627	6.24177024779853	-0.438438549100337	0.0636505167710052	0.375949573458412
Merged-chr11-54088461-4	chr11	54088350	54088550	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-12474.0	NM_001136076	18452.0	Mm.3705	NM_011031	ENSMUSG00000018906	P4ha2	AA407196|C76437|P4hl	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-14323379-4	chr2	14323286	14323486	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008625, intron 25 of 29)	RLTR17|LTR|ERVK	62383.0	NR_030609	100124488.0		NR_030609	ENSMUSG00000077897	Mir511	Mirn511|mir-511|mmu-mir-511	microRNA 511	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90482259-1	chr2	90482159	90482359	+	580.0	f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	-3085.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	-0.976218810643167	-0.958807578667172	-0.970154393244115	-0.802307919522077	-0.975655980298226	-0.956135940761092	-0.968345178379825	-0.318580693814032	2.02448033307012	0.51374182031802	1
Merged-chr3-133093125-4	chr3	133093027	133093227	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027927, intron 1 of 6)	intron (NM_027927, intron 1 of 6)	-1088.0	NM_001356309	67553.0	Mm.304899	NM_026231	ENSMUSG00000028018	Gstcd	4933434L15Rik	glutathione S-transferase, C-terminal domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132709662-2	chr4	132709562	132709762	+	565.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010166, intron 14 of 17)	MTEb|LTR|ERVL-MaLR	22884.0	NM_201368	381560.0	Mm.44558	NM_201368	ENSMUSG00000037752	Xkr8	4931440N07Rik|AI597014|Gm1031|XRG8|mXkr8	X-linked Kx blood group related 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-29729635-2	chr5	29729513	29729713	+	741.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6285.0	NM_001359198	23950.0	Mm.290110	NM_011847	ENSMUSG00000029131	Dnajb6	HSJ-2|Mrj|mDj4	DnaJ heat shock protein family (Hsp40) member B6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-45115123-4	chr13	45115037	45115237	+	749.94165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-113041.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-8334664-4	chr8	8334548	8334748	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	326125.0	NM_010111	13642.0	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-131041579-2	chr2	131041479	131041679	+	772.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_020014, exon 2 of 6)	exon (NM_020014, exon 2 of 6)	1103.0	NM_001271002	14588.0	Mm.198399	NM_020014	ENSMUSG00000027316	Gfra4	AW060733|G630015H18Rik	glial cell line derived neurotrophic factor family receptor alpha 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-97752436-2	chr4	97752349	97752549	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_001122952, intron 1 of 10)	intron (NM_001122952, intron 1 of 10)	-25177.0	NM_001122953	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132076856-3	chr4	132076765	132076965	+	753.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1552.0	NM_001128607	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-24736038-2	chr16	24735938	24736138	+	760.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145954, intron 2 of 7)	intron (NM_001145954, intron 2 of 7)	14183.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-8283791-4	chr17	8283688	8283888	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018819)	promoter-TSS (NM_018819)	-25.0	NM_018819	55951.0	Mm.288510	NM_018819	ENSMUSG00000023861	Mpc1	0610006G08Rik|3830411I18Rik|Brp44l	mitochondrial pyruvate carrier 1	protein-coding	3.88007305880527	2.50168418291078	3.87617491150237	2.33387524388531	3.7726699150978	3.77214325701697	3.13230754564892	2.80130581012126	0.121425909088646	0.854672936759068	0.998431161219273
Merged-chr16-8684577-2	chr16	8684477	8684677	+	657.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001324517)	TTS (NM_001324517)	3807.0	NM_001324517	436336.0	Mm.357666	NM_001324517		Gm5767	EG436336|Gm43786	predicted gene 5767	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-30694967-4	chr14	30694808	30695008	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19941.0	NM_019460	54650.0	Mm.294662	NM_019460	ENSMUSG00000006527	Sfmbt1	4930442N21Rik|9330180L21Rik|AA536974|Sfmbt|Smr	Scm-like with four mbt domains 1	protein-coding	3.86745932229472	4.32430669884536	4.59624764771531	4.47907750765698	3.83894492946578	4.62968280460038	3.15615313507953	4.73821470347871	-0.142788801426349	0.761818004863619	0.998431161219273
Merged-chr15-39659657-4	chr15	39659505	39659705	+	746.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001256384)	promoter-TSS (NM_001256384)	94.0	NM_001256384	116838.0	Mm.309296	NM_053271	ENSMUSG00000037386	Rims2	2810036I15Rik|AW048769|RIM2|Rab3ip2|Rim2(+40A)|Rim2(+44A)|Rim2(+4A)|Serg2|Syt3-rs|mKIAA0751	regulating synaptic membrane exocytosis 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-93683777-3	chr16	93683665	93683865	+	805.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173047, intron 1 of 2)	CpG	546.0	NM_173047	109857.0	Mm.4512	NM_173047	ENSMUSG00000022947	Cbr3	1110001J05Rik|C81353	carbonyl reductase 3	protein-coding	2.77010072512768	3.50692719264656	2.55855748069457	2.48480640748701	3.09932481352812	2.34861781557322	2.07937008505464	3.44233215008992	-0.046177176013562	0.950562053552097	0.998431161219273
Merged-chr1-138248274-4	chr1	138248180	138248380	+	999.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25458.0	NM_177397	338375.0	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127471855-4	chr7	127471754	127471954	+	951.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_145589, exon 1 of 11)	5' UTR (NM_145589, exon 1 of 11)	240.0	NM_145589	233895.0	Mm.44183	NM_145589	ENSMUSG00000030822	Prr14	BC006909	proline rich 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-180702057-4	chr2	180701955	180702155	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175551)	promoter-TSS (NM_175551)	47.0	NM_011805	23856.0	Mm.253836	NM_011805	ENSMUSG00000038914	Dido1	6720461J16Rik|D130048F08Rik|DATF-1|DIO-1|Datf1|dido	death inducer-obliterator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-42934980-1	chr16	42934880	42935080	+	609.0	f0_balb.idr	intron (NM_001285805, intron 1 of 10)	L1MB1|LINE|L1	-20600.0	NR_002445	170658.0	Mm.375824	NR_002445		BC002163	-	NADH dehydrogenase Fe-S protein 5 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-23136014-4	chr19	23135910	23136110	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-5216.0	NM_010638	16601.0	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|Gm9971	Kruppel-like factor 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-74668105-4	chr17	74667998	74668198	+	977.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007566, intron 62 of 72)	intron (NM_007566, intron 62 of 72)	-49652.0	NM_152817	74196.0	Mm.209503	NM_152817	ENSMUSG00000024078	Ttc27	2610511O17Rik	tetratricopeptide repeat domain 27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-103929983-4	chr14	103929906	103930106	+	974.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-85530.0	NM_001136061	13618.0	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-156841962-3	chr2	156841876	156842076	+	888.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291124, intron 1 of 3)	intron (NM_001291124, intron 1 of 3)	1969.0	NM_173396	228839.0	Mm.315625	NM_173396	ENSMUSG00000062175	Tgif2	4921501K24|5730599O09Rik|C80753|C81206	TGFB-induced factor homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135546673-2	chr5	135546573	135546773	+	902.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-1551.0	NM_146001	215114.0	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44527701-4	chr7	44527580	44527780	+	932.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_019866, exon 6 of 6)	3' UTR (NM_019866, exon 6 of 6)	-3011.0	NM_146189	233199.0	Mm.358888	NM_146189	ENSMUSG00000038670	Mybpc2	-	myosin binding protein C, fast-type	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-44711259-2	chr3	44711159	44711359	+	802.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus4|LINE|L1	667001.0	NR_045172	72511.0	Mm.140700	NR_045172	ENSMUSG00000097040	2610316D01Rik	-	RIKEN cDNA 2610316D01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3389323-4	chr19	3389237	3389437	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286557)	promoter-TSS (NM_001286557)	-41.0	NM_001286557	17771.0	Mm.209941	NM_010841	ENSMUSG00000024905	Tesmin	Mtl5	testis expressed metallothionein like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-60282079-3	chr2	60281967	60282167	+	882.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025422, intron 1 of 4)	B4A|SINE|B4	2417.0	NM_025422	66205.0	Mm.227281	NM_025422	ENSMUSG00000060703	Cd302	1110055L24Rik|AI159627	CD302 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120355179-4	chr11	120355082	120355282	+	943.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-6352.0	NM_172802	238021.0	Mm.481403	NM_172802	ENSMUSG00000025380	Fscn2	A930022G03|Ahl8|C630046B20Rik	fascin actin-bundling protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-64079152-3	chr15	64079096	64079296	+	736.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB7|LINE|L1	-18748.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-69181421-4	chr17	69181322	69181522	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355736, intron 1 of 21)	intron (NM_001355736, intron 1 of 21)	22066.0	NM_001355735	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-77282342-4	chr2	77282264	77282464	+	852.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1772.0	NM_175465	228071.0	Mm.27120	NM_175465	ENSMUSG00000042272	Sestd1	1500031J16Rik|A930010O20|Solo/Trio8	SEC14 and spectrin domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-73538981-2	chr2	73538881	73539081	+	629.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9494.0	NM_153138	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80376986-2	chr10	80376886	80377086	+	928.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-7349.0	NR_038088	100568459.0		NR_038088	ENSMUSG00000115783	Bc1	Gm24367	brain cytoplasmic RNA 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-27860257-2	chr15	27860157	27860357	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081302, intron 11 of 56)	intron (NM_001081302, intron 11 of 56)	165591.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122145925-4	chr5	122145848	122146048	+	990.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	C-rich|Low_complexity|Low_complexity	-7886.0	NM_183307	330188.0	Mm.386907	NM_183307	ENSMUSG00000043036	Ccdc63	4921511C16Rik	coiled-coil domain containing 63	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90450390-2	chr2	90450290	90450490	+	985.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 15 of 23)	B4A|SINE|B4	28784.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-60977454-2	chr8	60977354	60977554	+	712.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173873, intron 1 of 12)	intron (NM_173873, intron 1 of 12)	5857.0	NM_173873	12725.0	Mm.25263	NM_007711	ENSMUSG00000004319	Clcn3	Clc3	chloride channel, voltage-sensitive 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-97029329-4	chr7	97029232	97029432	+	988.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153591, intron 7 of 13)	intron (NM_153591, intron 7 of 13)	-52419.0	NM_001162477	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	1.02087171591381	0.649527891780939	1.12090213680541	0.632204659234454	1.22880715412736	0.651717739569363	1.13132821329708	1.39814233420109	1.23966630027243	0.423637205023752	0.900779628876708
Merged-chr12-83689752-2	chr12	83689652	83689852	+	843.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008943, intron 1 of 11)	intron (NM_008943, intron 1 of 11)	1189.0	NM_008943	19164.0	Mm.998	NM_008943	ENSMUSG00000019969	Psen1	Ad3h|PS-1|PS1|S182	presenilin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-38432959-7	chr16	38432831	38433031	+	967.5238039999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_134102, exon 1 of 11)	5' UTR (NM_134102, exon 1 of 11)	214.0	NM_134102	85031.0	Mm.279805	NM_134102	ENSMUSG00000002847	Pla1a	AA986889|Ps-pla1|Pspla1	phospholipase A1 member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-85273928-1	chr1	85273828	85274028	+	925.6666869999999	f1_balb.idr	Intergenic	Intergenic	-3362.0	NM_001037909	620078.0	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik	RIKEN cDNA C130026I21 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-54691079-2	chr13	54690979	54691179	+	719.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_027396, intron 1 of 10)	B4|SINE|B4	-2879.0	NM_001146027	105239.0	Mm.25366	NM_134064	ENSMUSG00000034928	Rnf44	AI854545|mKIAA1100	ring finger protein 44	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80341081-4	chr7	80341011	80341211	+	951.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133952)	promoter-TSS (NM_133952)	-892.0	NM_133952	101869.0	Mm.243024	NM_133952	ENSMUSG00000030533	Unc45a	AW538196	unc-45 myosin chaperone A	protein-coding	3.18801003643507	2.35928850135616	1.56986948127715	2.64429380455252	3.00045896250198	3.27583100784295	3.25261486784245	3.71863940547271	1.32327380298412	0.0673745989406221	0.389682521959229
Merged-chr11-102220728-2	chr11	102220628	102220828	+	570.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001284248, intron 3 of 28)	intron (NM_001284248, intron 3 of 28)	9422.0	NR_106179	102465892.0		NR_106179	ENSMUSG00000098863	Mir8101	Gm27705|mmu-mir-8101	microRNA 8101	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-80062922-1	chr17	80062822	80063022	+	725.0	f0_balb.idr	promoter-TSS (NM_144802)	promoter-TSS (NM_144802)	-654.0	NM_144802	72692.0	Mm.64579	NM_144802	ENSMUSG00000024095	Hnrnpll	2510028H02Rik|2810036L13Rik|AI256697|AI852082|Hnrpll	heterogeneous nuclear ribonucleoprotein L-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72990400-3	chr6	72990292	72990492	+	899.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31644.0	NM_001190327	19240.0	Mm.3532	NM_025284	ENSMUSG00000079523	Tmsb10	Ptmb10|Tb10	thymosin, beta 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-88499517-2	chr6	88499417	88499617	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19283.0	NM_016906	53421.0	Mm.28375	NM_016906	ENSMUSG00000030082	Sec61a1	AA408394|AA410007|Sec61a	Sec61 alpha 1 subunit (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-114652589-4	chr4	114652495	114652695	+	976.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-169125.0	NR_033617	433746.0	Mm.388908	NR_033617	ENSMUSG00000055198	Gm12830	-	predicted gene 12830	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-3008508-1	chr3	3008408	3008608	+	746.0	f1_balb.idr	Intergenic	Intergenic	-499522.0	NM_013920	30942.0	Mm.330897	NM_013920	ENSMUSG00000017688	Hnf4g	NR2A2	hepatocyte nuclear factor 4, gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124486145-2	chr5	124486045	124486245	+	683.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029532, intron 1 of 1)	intron (NM_029532, intron 1 of 1)	2990.0	NM_029532	76167.0	Mm.156035	NM_029532	ENSMUSG00000029402	Snrnp35	6330548G22Rik	small nuclear ribonucleoprotein 35 (U11/U12)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44551552-2	chr7	44551452	44551652	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009473, intron 6 of 9)	intron (NM_009473, intron 6 of 9)	2413.0	NM_009473	22260.0	Mm.968	NM_009473	ENSMUSG00000060601	Nr1h2	AI194859|LXR|LXRB|LXRBSV|LXRbeta|NER1|OR-1|RIP15|UR|Unr|Unr2	nuclear receptor subfamily 1, group H, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-9030999-4	chr12	9030905	9031105	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029321, intron 1 of 2)	intron (NM_029321, intron 1 of 2)	1008.0	NM_029321	75516.0	Mm.37581	NM_029321	ENSMUSG00000066637	Ttc32	1700013G20Rik	tetratricopeptide repeat domain 32	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-120492610-4	chr9	120492516	120492716	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026892)	promoter-TSS (NM_026892)	10.0	NM_026892	68969.0	Mm.28753	NM_026892	ENSMUSG00000006941	Eif1b	1500010M16Rik|3110001N14Rik|Gc20	eukaryotic translation initiation factor 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-29394605-1	chr17	29394505	29394705	+	1000.0	f1_balb.idr	Intergenic	Intergenic	33691.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	3.8280288235665	3.76263788643535	4.35214012894449	4.02570208779206	4.25020819590781	4.03355083065248	3.57333716616153	4.30843466121988	0.0890169791243682	0.842700188190041	0.998431161219273
Merged-chr4-58439829-4	chr4	58439739	58439939	+	776.770813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172989, intron 3 of 3)	ORR1D-int|LTR|ERVL-MaLR	1259.0	NR_037278	100526502.0		NR_037278	ENSMUSG00000093293	Mir3095	mir-3095|mmu-mir-3095	microRNA 3095	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-65959102-2	chr3	65959002	65959202	+	665.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355432)	promoter-TSS (NM_001355432)	-853.0	NM_001355432	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-27198786-4	chr3	27198690	27198890	+	950.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 1 of 4)	intron (NM_178772, intron 1 of 4)	15786.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-189867164-3	chr1	189867054	189867254	+	718.027771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008976, intron 18 of 18)	intron (NM_008976, intron 18 of 18)	55137.0	NM_026796	226830.0	Mm.156895	NM_026796	ENSMUSG00000026603	Smyd2	1110020E07Rik|4930402C15|KMT3C|Zmynd14	SET and MYND domain containing 2	protein-coding	1.09118790104294	0.815423856659348	0.801627846862959	1.70619190332236	1.2284798839626	1.23316385850513	1.1910014790486	1.79897609215029	0.825377087652871	0.541481346143092	0.954866069207078
Merged-chr9-57073124-3	chr9	57073022	57073222	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110351, intron 1 of 21)	CpG	1082.0	NM_001110351	20466.0	Mm.15755	NM_011378	ENSMUSG00000042557	Sin3a	AW553200|Sin3|mKIAA4126|mSin3A	transcriptional regulator, SIN3A (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-59486762-4	chr9	59486661	59486861	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019927)	promoter-TSS (NM_019927)	-387.0	NM_019927	23806.0	Mm.305925	NM_019927	ENSMUSG00000025234	Arih1	AU021774|Ari|Ari1|Hari|Hhari|Ubch7bp|Uip77	ariadne RBR E3 ubiquitin protein ligase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-8988308-4	chr17	8988234	8988434	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347544)	promoter-TSS (NM_001347544)	1.0	NM_001347544	66931.0	Mm.67591	NM_025851	ENSMUSG00000023873	1700010I14Rik	-	RIKEN cDNA 1700010I14 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-63347354-4	chr10	63347265	63347465	+	906.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-8330.0	NM_001159589	93759.0	Mm.351459	NM_019812	ENSMUSG00000020063	Sirt1	AA673258|SIR2L1|Sir2|Sir2a|Sir2alpha	sirtuin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-37477867-2	chr13	37477758	37477958	+	599.5	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	132513.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	0.157782179506641	0.365572851099447	0.0897269494731007	-0.0629739940097678	0.258841156342801	-0.0558418366503702	0.093800060073751	-0.0624981403741407	-0.759451973794206	0.714346635144213	1
Merged-chr10-60233551-2	chr10	60233451	60233651	+	765.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	-14291.0	NM_016803	53374.0	Mm.12866	NM_016803	ENSMUSG00000057337	Chst3	C6ST|C6ST-1|GST-0	carbohydrate (chondroitin 6/keratan) sulfotransferase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-6497848-3	chr11	6497749	6497949	+	775.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21773.0	NM_011221	19291.0	Mm.296150	NM_011221	ENSMUSG00000094483	Purb	2310015K15Rik|AA114818|Cager-2|D11Bwg0414e	purine rich element binding protein B	protein-coding	3.75619759342972	4.87525842905351	3.88824317348045	4.44494840848754	2.3477213403437	2.69997125728838	1.63630609537572	3.25843594508408	-2.557041406711	3.68209861160863e-05	0.00136351293648396
Merged-chr6-8687374-4	chr6	8687261	8687461	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252266, intron 5 of 11)	intron (NM_001252266, intron 5 of 11)	71097.0	NM_001252266	15893.0	Mm.275683	NM_010492	ENSMUSG00000062995	Ica1	69kDa|ICA69	islet cell autoantigen 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85588781-3	chr12	85588686	85588886	+	839.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10319.0	NM_001205052	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-57703298-4	chr6	57703205	57703405	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133737, intron 1 of 8)	CpG	850.0	NM_133737	71835.0	Mm.274904	NM_133737	ENSMUSG00000062190	Lancl2	1700003F10Rik	LanC (bacterial lantibiotic synthetase component C)-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44987997-2	chr7	44987997	44988197	+	846.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045266, intron 1 of 1)	B1_Mus2|SINE|Alu	1197.0	NR_045266	100502630.0	Mm.490013	NR_045266	ENSMUSG00000087138	Gm15545	-	predicted gene 15545	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166501066-1	chr2	166500966	166501166	+	542.0	f1_balb.idr	Intergenic	B2_Mm2|SINE|B2	53615.0	NR_015558	319684.0	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-131254602-2	chr2	131254502	131254702	+	567.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-7406.0	NM_001355681	74450.0	Mm.101264	NM_153501	ENSMUSG00000037514	Pank2	4933409I19Rik|AI642621	pantothenate kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-54921142-3	chr15	54921036	54921236	+	863.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001136077)	promoter-TSS (NM_001136077)	-990.0	NM_001285994	18606.0	Mm.250256	NM_015744	ENSMUSG00000022425	Enpp2	ATX|E-NPP 2|Npps2|PD-Ialpha|Pdnp2|lysoPLD	ectonucleotide pyrophosphatase/phosphodiesterase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31413912-4	chr14	31413812	31414012	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011894, intron 2 of 8)	MLT1K|LTR|ERVL-MaLR	3765.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-43506885-4	chr1	43506771	43506971	+	867.966675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010879, intron 1 of 4)	intron (NM_010879, intron 1 of 4)	61120.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124095973-4	chr5	124095879	124096079	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019875)	promoter-TSS (NM_019875)	-181.0	NM_019875	56325.0	Mm.254839	NM_019875	ENSMUSG00000029408	Abcb9	TAPL|mKIAA1520	ATP-binding cassette, sub-family B (MDR/TAP), member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88738819-4	chr3	88738735	88738935	+	995.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	21981.0	NR_028056	19769.0	Mm.4009	NM_009069	ENSMUSG00000028057	Rit1	RIBB|ROC1|Rit	Ras-like without CAAX 1	protein-coding	2.30730672732351	1.50052191249171	2.91346471288225	3.02145300461295	1.59136269851366	3.04668061736753	4.26620691585786	3.55055303224608	1.42810397846517	0.0868203102097757	0.452746287021785
Merged-chr1-165642017-4	chr1	165641897	165642097	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7456.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-67324521-4	chr18	67324419	67324619	+	959.8916630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033214, exon 2 of 4)	non-coding (NR_033214, exon 2 of 4)	-19045.0	NM_007702	12683.0	Mm.449	NM_007702	ENSMUSG00000024526	Cidea	AW212747	cell death-inducing DNA fragmentation factor, alpha subunit-like effector A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-96461941-2	chr15	96461841	96462041	+	921.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1098.0	NM_028148	72193.0	Mm.324474	NM_028148	ENSMUSG00000033228	Scaf11	1110061H03Rik|2610510E10Rik|AI462454|CASP11|SIP1|SRRP129|Sfrs2ip|Srsf2ip|mKIAA3013	SR-related CTD-associated factor 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-130873963-4	chr3	130873887	130874087	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-143589.0	NM_001005859	68436.0	Mm.140568	NM_026724	ENSMUSG00000062006	Rpl34	1100001I22Rik	ribosomal protein L34	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-4996148-4	chr7	4996052	4996252	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026741)	promoter-TSS (NM_026741)	-51.0	NM_026741	68490.0	Mm.76400	NM_026741	ENSMUSG00000051550	Zfp579	1110003A17Rik|Znf579	zinc finger protein 579	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46526267-2	chr19	46526123	46526323	+	835.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24575.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0.472256289598602	0.115131114698164	0.109274535417176	0.10475326199478	0.24469359851809	0.116450802155308	0.790452760222625	0.64387395183382	1.99658588408093	0.332303749668213	1
Merged-chr12-73359725-3	chr12	73359620	73359820	+	973.25	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49843.0	NR_046013	380765.0	Mm.490476	NR_046013	ENSMUSG00000056359	D830013O20Rik	Gm891	RIKEN cDNA D830013O20 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-50551112-4	chr16	50550992	50551192	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040379, intron 4 of 5)	intron (NR_040379, intron 4 of 5)	22590.0	NR_040379	619312.0	Mm.427671	NR_040379		G730013B05Rik	linc-Cblb|linc1610	RIKEN cDNA G730013B05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135198158-2	chr4	135198058	135198258	+	694.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME4a|LINE|L1	74602.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-69005366-3	chr8	69005213	69005413	+	784.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-83423.0	NM_007509	11966.0	Mm.249096	NM_007509	ENSMUSG00000006273	Atp6v1b2	AI194269|AI790362|Atp6b2|HO57|R74844	ATPase, H+ transporting, lysosomal V1 subunit B2	protein-coding	2.16947916556807	0.993657303482282	1.70764078048081	1.77540788480504	1.57782921463438	0.998304897347813	2.24133643768396	0.958905691383779	-0.457610116337633	0.72240636954191	0.998431161219273
Merged-chr2-104444945-4	chr2	104444863	104445063	+	767.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010434, intron 3 of 15)	intron (NM_010434, intron 3 of 15)	-16023.0	NR_035432	100316678.0		NR_035432	ENSMUSG00000084516	Mir1902	Mirn1902|mmu-mir-1902	microRNA 1902	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-29239830-6	chr19	29239813	29240013	+	895.555542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11890.0	NM_001048177	16452.0	Mm.275839	NM_008413	ENSMUSG00000024789	Jak2	Fd17	Janus kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-30078168-2	chr4	30078068	30078268	+	744.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2B|LINE|L1	-586428.0	NR_040655	75332.0	Mm.108636	NR_040655		4930556G01Rik	-	RIKEN cDNA 4930556G01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-49074624-1	chr7	49074524	49074724	+	550.0	f0_balb.idr	intron (NM_001111016, intron 2 of 38)	intron (NM_001111016, intron 2 of 38)	87534.0	NR_154465	108167511.0	Mm.400599	NR_154465		9130015G15Rik	-	RIKEN cDNA 9130015G15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47756297-7	chr17	47756223	47756423	+	744.4523929999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161723, intron 1 of 8)	(GA)n|Simple_repeat|Simple_repeat	18392.0	NM_001161723	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	-1.58994551673671	-1.55912852307891	-1.56844783632235	-1.57610299769523	-1.18549093183599	-1.55710898902261	-1.56633814807757	-1.57473272746952	1.78703309985663	0.610309988231842	1
Merged-chr16-55972345-2	chr16	55972245	55972445	+	743.666626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_024218)	TTS (NM_024218)	-1459.0	NM_173026	271377.0	Mm.282814	NM_173026	ENSMUSG00000022601	Zbtb11	9230110G02Rik|ZNF-U69274	zinc finger and BTB domain containing 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-84529350-4	chr2	84529241	84529441	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22468.0	NR_046046	672763.0	Mm.491046	NR_046046	ENSMUSG00000087362	Gm13710	-	predicted gene 13710	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-168553835-3	chr2	168553752	168553952	+	903.9110720000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037177, intron 3 of 6)	intron (NM_001037177, intron 3 of 6)	36513.0	NM_001291178	18019.0	Mm.116802	NM_010899	ENSMUSG00000027544	Nfatc2	AI607462|NF-ATc2|NF-ATp|NFAT1|NFAT1-D|Nfatp	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131439238-1	chr1	131439138	131439338	+	571.0	f0_balb.idr	intron (NM_001081011, intron 2 of 22)	intron (NM_001081011, intron 2 of 22)	88123.0	NM_001081011	14270.0	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-94443423-4	chr8	94443331	94443531	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8328.0	NR_015514	320377.0	Mm.486022	NR_015514		9330175E14Rik	A630085K21	RIKEN cDNA 9330175E14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-107781479-4	chr3	107781356	107781556	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20987.0	NM_001113529	12977.0	Mm.795	NM_007778	ENSMUSG00000014599	Csf1	C87615|Csfm|MCSF|op	colony stimulating factor 1 (macrophage)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-22841565-2	chr11	22841465	22841665	+	621.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001169114, intron 1 of 1)	intron (NM_001169114, intron 1 of 1)	18170.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-132249845-2	chr2	132249745	132249945	+	679.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_011045, exon 5 of 6)	exon (NM_011045, exon 5 of 6)	-2057.0	NM_001141971	70612.0	Mm.30116	NM_027478	ENSMUSG00000027341	Tmem230	5730494N06Rik|AA407821	transmembrane protein 230	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-6724516-2	chr2	6724416	6724616	+	575.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110232, intron 3 of 15)	B1_Mur2|SINE|Alu	-2854.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-119113990-4	chr12	119113910	119114110	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	124266.0	NM_177290	320910.0	Mm.217000	NM_177290	ENSMUSG00000025321	Itgb8	4832412O06Rik	integrin beta 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26241356-2	chr17	26241256	26241456	+	774.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001206335, intron 1 of 12)	intron (NM_001206335, intron 1 of 12)	2886.0	NM_207217	106581.0	Mm.28844	NM_207217	ENSMUSG00000024187	Fam234a	Itfg3	family with sequence similarity 234, member A	protein-coding	-1.25043705834432	-1.22344025710165	-1.23393384777392	-1.24255359558995	-1.10155481940592	-1.22116625222791	-0.775165256172952	-1.24101066485209	2.4860994894339	0.452464134362524	1
Merged-chr7-118518860-4	chr7	118518724	118518924	+	940.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304758, intron 5 of 6)	intron (NM_001304758, intron 5 of 6)	14532.0	NM_001304758	12850.0	Mm.20634	NM_009940	ENSMUSG00000030652	Coq7	clk-1	demethyl-Q 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97343148-4	chr6	97343059	97343259	+	871.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 8 of 23)	intron (NM_145148, intron 8 of 23)	-90379.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	0.174485673266486	-0.0385686811800842	-0.0421521068827718	0.405956598015448	0.275030278019613	-0.0377547726136951	0.241737428334585	-0.0444106184286817	-0.223486653660448	0.918281557763515	1
Merged-chr2-167230319-3	chr2	167230212	167230412	+	875.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008968, intron 1 of 9)	L1MB5|LINE|L1	10225.0	NM_008968	19223.0	Mm.2339	NM_008968	ENSMUSG00000017969	Ptgis	Cyp8|Cyp8a1|Pgis	prostaglandin I2 (prostacyclin) synthase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-105759118-3	chr9	105759011	105759211	+	833.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001102607, intron 13 of 36)	intron (NM_001102607, intron 13 of 36)	50537.0	NM_172927	245026.0	Mm.482507	NM_172927	ENSMUSG00000043719	Col6a6	E330019B14|E330026B02Rik	collagen, type VI, alpha 6	protein-coding	1.17536320519003	1.38282494509209	2.61423099050685	1.26901741910821	3.56825300732423	3.11226074924361	4.25790196779257	3.74749800536119	3.74447649379799	1.56111488395333e-05	0.000662307134474448
Merged-chr5-148649954-2	chr5	148649854	148650054	+	677.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-91886.0	NR_028285	70138.0	Mm.417834	NR_028285	ENSMUSG00000086494	2210417A02Rik	AV081004	RIKEN cDNA 2210417A02 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-7883715-3	chr10	7883583	7883783	+	804.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47302.0	NR_039563	100628581.0		NR_039563	ENSMUSG00000093060	Mir5104	mir-5104|mmu-mir-5104|mu-mir-5104	microRNA 5104	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30233925-2	chr7	30233825	30234025	+	593.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_027259)	TTS (NM_027259)	-1728.0	NM_025548	66411.0	Mm.27947	NM_025548	ENSMUSG00000006095	Tbcb	2410007D12Rik|AU041393|CG22|CKAPI|Ckap1	tubulin folding cofactor B	protein-coding	0.66999572368351	0.943811025125041	0.375924056422749	0.185559804530545	0.178028814723447	0.718578065374307	0.192379984518095	0.186488161210229	-1.53718171808509	0.437953432991961	1
Merged-chr2-84740824-2	chr2	84740724	84740924	+	801.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_029544)	TTS (NR_029544)	354.0	NR_029544	387149.0		NR_029544	ENSMUSG00000065484	Mir130a	Mirn130|Mirn130a|mir-130a	microRNA 130a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-153806823-2	chr3	153806723	153806923	+	585.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-14736.0	NR_045801	70594.0	Mm.491050	NR_045801	ENSMUSG00000062046	5730460C07Rik	-	RIKEN cDNA 5730460C07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-81264729-5	chr13	81264636	81264836	+	975.5200199999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 85 of 89)	L1PB4|LINE|L1	300662.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43452960-2	chr4	43452860	43453060	+	671.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110322, intron 2 of 6)	intron (NM_001110322, intron 2 of 6)	1666.0	NM_001110320	12517.0	Mm.188157	NM_007654	ENSMUSG00000028459	Cd72	CD72c|Ly-19|Ly-32|Ly-m19|Lyb-2	CD72 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-72967142-4	chr17	72967043	72967243	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48838.0	NM_029999	77889.0	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-45024111-4	chr16	45024003	45024203	+	955.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69908.0	NM_026439	67896.0	Mm.181074	NM_026439	ENSMUSG00000022665	Ccdc80	2610001E17Rik|DRO1|Ssg1|Urb	coiled-coil domain containing 80	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-24715242-4	chr7	24715153	24715353	+	913.033325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_199150)	TTS (NM_199150)	5994.0	NM_199150	232972.0	Mm.293074	NM_199150	ENSMUSG00000045587	BC049730	Lypd10	cDNA sequence BC049730	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78898978-4	chr15	78898782	78898982	+	902.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001316686)	promoter-TSS (NM_001316686)	-886.0	NR_133564	20401.0	Mm.4462	NM_009164	ENSMUSG00000022436	Sh3bp1	3BP-1	SH3-domain binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-23585556-2	chr13	23585456	23585656	+	784.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001290530)	TTS (NM_001290530)	414.0	NM_001290530	319179.0	Mm.440391	NM_178194	ENSMUSG00000047246	Hist1h2be	-	histone cluster 1, H2be	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-136469092-3	chr4	136468997	136469197	+	846.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024452)	promoter-TSS (NM_024452)	-664.0	NM_024452	269593.0	Mm.485824	NM_024452	ENSMUSG00000001089	Luzp1	2700072H04Rik|AI266952|Luzp|mFLJ00226	leucine zipper protein 1	protein-coding	-0.151591052260365	-0.130940799197888	0.714739633291343	-0.142844897156857	-0.150282248982373	-0.12944136653855	0.729351554324659	-0.141931488452262	0.041083046276385	0.986412301813541	1
Merged-chr11-84520956-2	chr11	84520856	84521056	+	582.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008498, intron 3 of 4)	intron (NM_008498, intron 3 of 4)	4578.0	NM_008498	16869.0	Mm.4965	NM_008498	ENSMUSG00000018698	Lhx1	Lim1	LIM homeobox protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-33275158-4	chr5	33275062	33275262	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310535)	promoter-TSS (NM_001310535)	-158.0	NM_001198860	13016.0	Mm.7286	NM_013502	ENSMUSG00000037373	Ctbp1	BARS|CtBP3/BARS|D4S115h|D5H4S115|D5H4S115E	C-terminal binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-59916083-2	chr1	59915983	59916183	+	893.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037725, intron 1 of 7)	intron (NM_001037725, intron 1 of 7)	3077.0	NM_001037725	72750.0	Mm.258250	NM_001037725	ENSMUSG00000041040	Fam117b	2810425F24Rik|6330416D14Rik|Als2cr13	family with sequence similarity 117, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-122244024-3	chr2	122243931	122244131	+	838.277771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146126, intron 1 of 8)	intron (NM_146126, intron 1 of 8)	9192.0	NM_146126	20322.0	Mm.371580	NM_146126	ENSMUSG00000027227	Sord	Sdh-1|Sdh1|Sodh-1	sorbitol dehydrogenase	protein-coding	1.08730418809622	2.65260588403643	1.1774787386549	1.51147423984784	1.09605810790654	1.79701453144596	0.926453232234525	2.10871879968673	-0.566902053764893	0.639369091197887	0.982599433509505
Merged-chr15-31532206-4	chr15	31532109	31532309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-1172.0	NM_172606	223455.0	Mm.272185	NM_172606	ENSMUSG00000039100	March6	3830408G03|F830029L24Rik|mKIAA0597	membrane-associated ring finger (C3HC4) 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-41466853-4	chr13	41466761	41466961	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111324, intron 1 of 7)	intron (NM_001111324, intron 1 of 7)	20499.0	NM_001111324	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-121154800-2	chr1	121154700	121154900	+	917.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	67395.0	NR_110450	98452.0	Mm.131017	NR_038008	ENSMUSG00000097881	Celrr	AI848258|B230209K01Rik|Celr|Gm818	cerebellum expressed regulatory RNA	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-5011654-3	chr11	5011546	5011746	+	900.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001243043, intron 2 of 22)	intron (NM_001243043, intron 2 of 22)	24822.0	NM_001355660	11764.0	Mm.274816	NM_007454	ENSMUSG00000009090	Ap1b1	Adtb1|b2b1660Clo	adaptor protein complex AP-1, beta 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84953031-2	chr8	84952932	84953132	+	624.0	f0_c57.idr|f1_balb.idr	intron (NM_001357328, intron 5 of 6)	intron (NM_001357328, intron 5 of 6)	5042.0	NM_001357328	234542.0	Mm.461701	NM_144929	ENSMUSG00000048617	Rtbdn	A330096I21Rik|BC022744|Rtbnd	retbindin	protein-coding	2.25781834807417	2.53357037883221	1.95188932491271	2.37903193871145	2.72174693629519	1.37585437927318	2.11468287143157	1.90899236221466	-0.366364632011008	0.693859987969589	0.997555376536883
Merged-chr11-54068936-2	chr11	54068836	54069036	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019417)	promoter-TSS (NM_019417)	81.0	NM_019417	30794.0	Mm.21830	NM_019417	ENSMUSG00000020388	Pdlim4	Ril	PDZ and LIM domain 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114954275-1	chr11	114954175	114954375	+	706.0	f0_c57.idr	Intergenic	MMERVK9E_I-int|LTR|ERVK	6142.0	NM_199225	387565.0	Mm.351450	NM_199225	ENSMUSG00000058728	Cd300c	Clm6	CD300C molecule	protein-coding	0.615467577557448	1.03688578441517	0.997671413725622	1.49968882999734	1.33771608396888	1.19723453911236	0.64012708582019	0.630893448096303	-0.366789582761776	0.814532160351427	0.998431161219273
Merged-chr19-16373293-8	chr19	16373218	16373418	+	852.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008139, intron 5 of 6)	intron (NM_008139, intron 5 of 6)	-58314.0	NR_105832	102465218.0		NR_105832	ENSMUSG00000098718	Mir496b	Gm28028|mmu-mir-496b	microRNA 496b	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167590734-2	chr2	167590634	167590834	+	852.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41271.0	NM_001311146	66589.0	Mm.278783	NM_023230	ENSMUSG00000078923	Ube2v1	0610011J09Rik|AI256840|CROC-1|CROC1|D7Bwg1382e|UEV-1	ubiquitin-conjugating enzyme E2 variant 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-142451742-2	chr5	142451642	142451842	+	664.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_199068, intron 5 of 8)	intron (NM_199068, intron 5 of 8)	-12189.0	NM_172725	231855.0	Mm.78250	NM_172725	ENSMUSG00000039623	Ap5z1	C330006K01Rik	adaptor-related protein complex 5, zeta 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-30954410-4	chr11	30954310	30954510	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025745)	promoter-TSS (NM_025745)	12.0	NM_023906	65257.0	Mm.440539	NM_023906	ENSMUSG00000020305	Asb3	2400011J03Rik|Asb-3	ankyrin repeat and SOCS box-containing 3	protein-coding	5.7216872520853	5.70289498587529	5.92418196785608	4.87514783083882	5.12009681847694	5.62191992639946	6.02250720626374	5.79288424824629	0.0736446336623225	0.808204635997352	0.998431161219273
Merged-chr16-43702880-2	chr16	43702780	43702980	+	596.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-38696.0	NM_001146325	100043314.0	Mm.390896	NM_001146325	ENSMUSG00000071552	Tigit	Vstm3	T cell immunoreceptor with Ig and ITIM domains	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-45750477-2	chr17	45750377	45750577	+	807.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_152153, intron 2 of 4)	intron (NR_152153, intron 2 of 4)	15971.0	NR_152153	433111.0	Mm.213441	NR_152153	ENSMUSG00000097727	F630040K05Rik	-	RIKEN cDNA F630040K05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-59667061-2	chr4	59666961	59667161	+	655.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001015681, intron 1 of 3)	intron (NM_001015681, intron 1 of 3)	40850.0	NM_153158	230259.0	Mm.45688	NM_153158	ENSMUSG00000045071	E130308A19Rik	-	RIKEN cDNA E130308A19 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70862117-2	chr8	70862017	70862217	+	654.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5109.0	NM_032397	84036.0	Mm.32074	NM_032397	ENSMUSG00000002908	Kcnn1	AI854248|KCa2.1|SK1	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-100399199-2	chr9	100399100	100399300	+	850.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	87273.0	NM_001033543	213208.0	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	2.32941197491081	2.05259858633173	2.14616000166226	2.07773139016912	2.63387091215787	3.88019709164798	1.25514473733628	1.72836609688109	1.22559602793696	0.194778164354172	0.675158440655244
Merged-chr7-123322611-4	chr7	123322519	123322719	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316713, intron 4 of 19)	intron (NM_001316713, intron 4 of 19)	47296.0	NM_001122643	70497.0	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-78189027-10	chr11	78188799	78188999	+	900.511902	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_033475, exon 1 of 10)	5' UTR (NM_033475, exon 1 of 10)	151.0	NM_033475	19376.0	Mm.275864	NM_033475	ENSMUSG00000002059	Rab34	AI326479|Narr|Rah|Rah1	RAB34, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-110174553-4	chr5	110174446	110174646	+	861.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040430, intron 1 of 2)	RLTR31D_MM|LTR|ERVK	1958.0	NR_040431	100504007.0	Mm.441495	NR_040430	ENSMUSG00000086247	Gm15787	-	predicted gene 15787	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-13427071-4	chr1	13427021	13427221	+	945.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-53038.0	NM_008678	17978.0	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-84528943-4	chr2	84528857	84529057	+	700.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22084.0	NR_046046	672763.0	Mm.491046	NR_046046	ENSMUSG00000087362	Gm13710	-	predicted gene 13710	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-58134588-3	chr15	58134501	58134701	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027435, intron 1 of 27)	CpG	481.0	NM_027435	70472.0	Mm.221758	NM_027435	ENSMUSG00000022360	Atad2	2610509G12Rik	ATPase family, AAA domain containing 2	protein-coding	4.01263118304118	2.80351137847144	3.60320011852628	4.06703835931511	4.28270806185297	2.82603421546465	3.63114087868369	3.73906990566696	0.0178472754673752	0.974814164961019	0.998431161219273
Merged-chr12-110933035-4	chr12	110932928	110933128	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081057, exon 10 of 21)	exon (NM_001081057, exon 10 of 21)	43764.0	NM_001081057	104859.0	Mm.35583	NM_175336	ENSMUSG00000021275	Tecpr2	4930573I19Rik|AI604920|mKIAA0297	tectonin beta-propeller repeat containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-60755928-4	chr19	60755832	60756032	+	976.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178421)	promoter-TSS (NM_178421)	-55.0	NM_178421	332397.0	Mm.186390	NM_178421	ENSMUSG00000072437	Nanos1	NOS-1	nanos C2HC-type zinc finger 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-6446320-2	chr15	6446220	6446420	+	836.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013485, intron 1 of 10)	MLT1A1|LTR|ERVL-MaLR	987.0	NM_013485	12279.0	Mm.29095	NM_013485	ENSMUSG00000022149	C9	-	complement component 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-6622708-4	chr15	6622597	6622797	+	954.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155272, intron 3 of 6)	MER77|LTR|ERVL	31606.0	NR_155272	102632231.0	Mm.444780	NR_155272		LOC102632231	-	uncharacterized LOC102632231	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19178930-4	chr7	19178855	19179055	+	885.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347582, intron 1 of 21)	intron (NM_001347582, intron 1 of 21)	-2215.0	NM_001162996	72205.0	Mm.154121	NM_028153	ENSMUSG00000040811	Eml2	1600029N02Rik|EMAP-2	echinoderm microtubule associated protein like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3691161-5	chr12	3691105	3691305	+	966.6333619999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162465, intron 9 of 17)	RLTR10D2|LTR|ERVK	-115775.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-113741380-4	chr9	113741287	113741487	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286599)	promoter-TSS (NM_001286599)	-86.0	NM_001286599	76499.0	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-54632327-2	chr2	54632227	54632427	+	622.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173030, intron 3 of 12)	intron (NM_173030, intron 3 of 12)	195940.0	NM_173030	271786.0	Mm.330227	NM_173030	ENSMUSG00000060988	Galnt13	A230002A12|A230020F20|BB182356	polypeptide N-acetylgalactosaminyltransferase 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118747125-2	chr9	118747025	118747225	+	568.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 1 of 13)	B3A|SINE|B2	35433.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-75316564-2	chr10	75316464	75316664	+	855.3333130000001	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009630)	promoter-TSS (NM_009630)	-313.0	NM_009630	11540.0	Mm.333734	NM_009630	ENSMUSG00000020178	Adora2a	A2AAR|A2aR|AA2AR	adenosine A2a receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-34645158-2	chr4	34645058	34645258	+	793.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_151507, intron 8 of 19)	intron (NR_151507, intron 8 of 19)	30201.0	NM_181406	109093.0	Mm.22363	NM_181406	ENSMUSG00000028292	Rars2	1500002I10Rik|PRO1992|Rarsl	arginyl-tRNA synthetase 2, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-21328752-3	chr5	21328656	21328856	+	880.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029195, intron 4 of 18)	intron (NM_029195, intron 4 of 18)	-43917.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-130531896-2	chr4	130531796	130531996	+	914.666626	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_025998, exon 7 of 7)	3' UTR (NM_025998, exon 7 of 7)	42140.0	NM_025998	67149.0	Mm.423029	NM_025998	ENSMUSG00000078532	Nkain1	2610200G18Rik|2810426C15Rik	Na+/K+ transporting ATPase interacting 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-60624549-3	chr13	60624544	60624744	+	805.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	22433.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36547323-4	chr1	36547220	36547420	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_132321)	promoter-TSS (NR_132321)	-68.0	NR_132321	109346.0	Mm.247537	NM_026241	ENSMUSG00000079610	Ankrd39	9130416N05Rik|C030004B10Rik	ankyrin repeat domain 39	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-142754935-2	chr6	142754835	142755035	+	839.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1751.0	NM_009908	12764.0	Mm.3820	NM_009908	ENSMUSG00000030282	Cmas	AW208911|CMPNeu5Ac|D6Bwg0250e	cytidine monophospho-N-acetylneuraminic acid synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-87672820-2	chr6	87672720	87672920	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001170489)	promoter-TSS (NM_001170489)	-652.0	NM_001170489	72103.0	Mm.31770	NM_024251	ENSMUSG00000030051	Aplf	2010301N04Rik|AI452191	aprataxin and PNKP like factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135472616-4	chr5	135472515	135472715	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146001, intron 1 of 30)	intron (NM_146001, intron 1 of 30)	72507.0	NM_146001	215114.0	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71609495-2	chr8	71609449	71609649	+	927.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-1475.0	NM_146211	234407.0	Mm.240885	NM_146211	ENSMUSG00000034807	Colgalt1	2810024B22Rik|Glt25d1	collagen beta(1-O)galactosyltransferase 1	protein-coding	1.28411152924464	1.89807400826225	2.81299944764128	2.56153045894829	2.01657135105163	2.26366460911285	2.55745192927265	2.89672583726688	0.425799699935244	0.644068086397859	0.983312975135923
Merged-chr2-20992776-4	chr2	20992654	20992854	+	984.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1-int|LTR|ERVL-MaLR	23880.0	NR_033225	433408.0	Mm.386941	NR_033225		Gm13375	-	predicted gene 13375	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-20828513-4	chr10	20828418	20828618	+	775.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-103440.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-135430521-4	chr1	135430412	135430612	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153774)	promoter-TSS (NM_153774)	-13.0	NM_001357578	226432.0	Mm.271642	NM_153774	ENSMUSG00000041879	Ipo9	0710008K06Rik|AI845704|C78347|Imp9|Ranbp9	importin 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-27191203-2	chr7	27191103	27191303	+	683.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285825, intron 4 of 6)	intron (NM_001285825, intron 4 of 6)	4557.0	NM_001046637	53607.0	Mm.386890	NM_015782	ENSMUSG00000061479	Snrpa	C430021M15Rik|Rnu1a-1|Rnu1a1|U1-A|U1A	small nuclear ribonucleoprotein polypeptide A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-109375595-2	chr11	109375495	109375695	+	564.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010303, intron 2 of 3)	intron (NM_010303, intron 2 of 3)	-11941.0	NR_038097	100036768.0	Mm.467767	NR_038097	ENSMUSG00000056687	Gm11696	-	predicted gene 11696	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-99791030-3	chr13	99790933	99791133	+	924.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	109650.0	NM_013732	27220.0	Mm.75498	NM_013732	ENSMUSG00000021647	Cartpt	Cart	CART prepropeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105711440-2	chr8	105711340	105711540	+	556.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3151.0	NM_027655	71046.0	Mm.280888	NM_027655	ENSMUSG00000013158	4933405L10Rik	-	RIKEN cDNA 4933405L10 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-184852459-4	chr1	184852385	184852585	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6638.0	NM_133684	67247.0	Mm.177724	NM_133684	ENSMUSG00000073481	Marc2	2810484M10Rik|Mosc2|mARC1	mitochondrial amidoxime reducing component 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-35270767-2	chr2	35270667	35270867	+	888.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_001206367, intron 2 of 17)	intron (NM_001206367, intron 2 of 17)	4023.0	NM_001206369	227753.0	Mm.443	NM_146120	ENSMUSG00000026879	Gsn	ADF	gelsolin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-112367474-3	chr2	112367340	112367540	+	720.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026519, exon 2 of 5)	exon (NM_026519, exon 2 of 5)	587.0	NM_026519	68032.0	Mm.220942	NM_026519	ENSMUSG00000027131	Emc4	2610318K02Rik|Tmem85	ER membrane protein complex subunit 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-26970607-4	chr14	26970511	26970711	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145221)	promoter-TSS (NM_145221)	-60.0	NM_145221	72993.0	Mm.202322	NM_145221	ENSMUSG00000040760	Appl1	2900057D21Rik|7330406P05Rik|AI585782|AW209077|BB022931|C88264|DIP13	adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1	protein-coding	5.37355259103863	5.59274774700274	5.34228103140503	5.35883605286765	5.49983579659825	5.74022583605072	4.98139328086357	5.40998497200078	0.0168614691947086	0.952246852208049	0.998431161219273
Merged-chr10-120227051-4	chr10	120226963	120227163	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025431)	promoter-TSS (NM_025431)	3.0	NM_025431	66225.0	Mm.291755	NM_025431	ENSMUSG00000020224	Llph	1190005P17Rik	LLP homolog, long-term synaptic facilitation (Aplysia)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53112470-5	chr4	53112349	53112549	+	862.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 5 of 49)	intron (NM_013454, intron 5 of 49)	47446.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-3197305-2	chr5	3197205	3197405	+	941.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-146588.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-116238847-4	chr8	116238737	116238937	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-266178.0	NM_029297	75465.0	Mm.23114	NM_029297	ENSMUSG00000034467	Dynlrb2	1700009A04Rik|DNLC2B|Dncl2b	dynein light chain roadblock-type 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-29328036-2	chr10	29327936	29328136	+	622.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110195, intron 3 of 5)	MIRb|SINE|MIR	14536.0	NM_025855	52665.0	Mm.28930	NM_025855	ENSMUSG00000019883	Echdc1	1700028A24Rik|AI314462|AI930038|D10Ertd667e|MMCD	enoyl Coenzyme A hydratase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-145253329-2	chr4	145253229	145253429	+	876.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-6459.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-61448144-4	chr18	61448040	61448240	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36467.0	NR_045419	442846.0	Mm.417648	NR_045419		A530050N04Rik	-	RIKEN cDNA A530050N04 gene	ncRNA	-0.802593673557486	-0.793094718163527	-0.341243695287107	-0.798614554876962	-0.802002397560642	-0.791090896558683	-0.332078011335404	-0.79819523297655	0.040958530317021	0.989184000390448	1
Merged-chr4-34429845-5	chr4	34429721	34429921	+	909.4266359999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-120794.0	NM_001007589	433693.0	Mm.389532	NM_026019	ENSMUSG00000028291	Akirin2	2700059D21Rik|AA114675|AA522011|AU019887|Akirin-2	akirin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-90217249-1	chr16	90217149	90217349	+	544.0	f1_c57bl6.idr	Intergenic	Intergenic	-3493.0	NM_011434	20655.0	Mm.276325	NM_011434	ENSMUSG00000022982	Sod1	B430204E11Rik|Cu/Zn-SOD|CuZnSOD|Ipo-1|Ipo1|SODC|Sod-1	superoxide dismutase 1, soluble	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-26812273-1	chr13	26812173	26812373	+	609.0	f0_c57.idr	Intergenic	Intergenic	-42108.0	NM_008232	15192.0	Mm.7411	NM_008232	ENSMUSG00000045835	Hdgfl1	4921520N01Rik|HRP-1|Hdgfrp1|Pwwp1	hepatoma derived growth factor-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-66662175-4	chr15	66662082	66662282	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-8588.0	NM_009375	21819.0	Mm.441333	NM_009375	ENSMUSG00000053469	Tg	Tgn|cog	thyroglobulin	protein-coding	2.23130089029591	1.23747540850462	2.74412659623859	1.78006472396185	1.95741536120277	1.24374002714524	2.12755254201171	2.36945734067335	-0.332111877384736	0.754207320036519	0.998431161219273
Merged-chr15-86196018-2	chr15	86195918	86196118	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-9877.0	NM_145475	223753.0	Mm.222685	NM_145475	ENSMUSG00000035891	Cerk	AI848610|D330016D08Rik|mKIAA1646	ceramide kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-51052468-1	chr14	51052368	51052568	+	721.0	f0_balb.idr	Intergenic	Intergenic	-2305.0	NM_001011877	497113.0	Mm.379741	NM_001011877	ENSMUSG00000059648	Rnase11	Raj1	ribonuclease, RNase A family, 11 (non-active)	protein-coding	-1.05877568042897	-1.03501312238488	-1.04817210678232	-1.05426068996071	-1.05810152525527	-1.03216151557194	-0.188696606725984	-1.05378786495764	3.16074139804981	0.330468818528456	1
Merged-chr11-98707272-2	chr11	98707172	98707372	+	677.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_011869, exon 21 of 26)	exon (NM_011869, exon 21 of 26)	5959.0	NM_009971	12985.0	Mm.1238	NM_009971	ENSMUSG00000038067	Csf3	Csfg|G-CSF|MGI-IG	colony stimulating factor 3 (granulocyte)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-169781986-1	chr2	169781886	169782086	+	726.0	f0_c57.idr	intron (NM_080455, intron 1 of 1)	intron (NM_080455, intron 1 of 1)	148340.0	NM_080455	228911.0	Mm.315789	NM_080455	ENSMUSG00000047907	Tshz2	2900073F20Rik|B830045G17|Mtsh2|Sdccag33l|Tsh2|Zfp218|mKIAA4248|teashirt2	teashirt zinc finger family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-8894824-4	chr5	8894730	8894930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008830, intron 2 of 27)	intron (NM_008830, intron 2 of 27)	1109.0	NM_008830	18670.0	Mm.297825	NM_008830	ENSMUSG00000042476	Abcb4	Mdr2|Pgy-2|Pgy2|mdr-2	ATP-binding cassette, sub-family B (MDR/TAP), member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-43933157-2	chr14	43933057	43933257	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPEY4_LTR|LTR|ERVK	-9789.0	NM_053112	93725.0	Mm.429087	NM_053112	ENSMUSG00000090166	Ear10	Raf2	eosinophil-associated, ribonuclease A family, member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4547810-2	chr16	4547710	4547910	+	745.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_031182, intron 5 of 6)	B2_Mm2|SINE|B2	11910.0	NM_031182	83383.0	Mm.273210	NM_031182	ENSMUSG00000005718	Tfap4	AI642933|AP-4|D930048N17Rik|Tcfap4|bHLHc41	transcription factor AP4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-83730725-4	chr17	83730677	83730877	+	981.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054082, intron 3 of 16)	Lx8|LINE|L1	24614.0	NM_001171052	116871.0	Mm.277668	NM_054082	ENSMUSG00000055817	Mta3	1110002J22Rik|mKIAA1266	metastasis associated 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-129397463-5	chr6	129397418	129397618	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001204239, exon 1 of 5)	5' UTR (NM_001204239, exon 1 of 5)	221.0	NM_001204239	56760.0	Mm.30700	NM_019985	ENSMUSG00000030159	Clec1b	1810061I13Rik|Clec-2|Clec2	C-type lectin domain family 1, member b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-113590974-3	chr13	113590866	113591066	+	940.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27598.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-28165601-3	chr3	28165436	28165636	+	687.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-97678.0	NM_001163007	665113.0	Mm.126193	NM_026910	ENSMUSG00000027692	Tnik	1500031A17Rik|4831440I19Rik|AI451411|C530008O15Rik|C630040K21Rik	TRAF2 and NCK interacting kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-37963195-2	chr15	37963095	37963295	+	762.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-2140.0	NM_199476	382985.0	Mm.24738	NM_199476	ENSMUSG00000022292	Rrm2b	p53R2	ribonucleotide reductase M2 B (TP53 inducible)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-57739442-2	chr3	57739326	57739526	+	788.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_130743, intron 1 of 9)	B2_Mm1t|SINE|B2	3369.0	NR_130743	24017.0	Mm.274360	NM_011883	ENSMUSG00000036503	Rnf13	2010001H16Rik|Rzf	ring finger protein 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-120098582-4	chr7	120098477	120098677	+	956.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-3849.0	NM_145586	233806.0	Mm.257952	NM_145586	ENSMUSG00000030917	Tmem159	8430420C20Rik	transmembrane protein 159	protein-coding	-1.8429182434137	-1.8129848525291	-1.82203695700074	-1.54461076807193	-1.84081697472045	-1.81102322372834	-1.81998775896484	-1.82814164409203	-1.43114970378833	0.684630132144154	1
Merged-chr1-135282733-4	chr1	135282625	135282825	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159624, intron 1 of 9)	intron (NM_001159624, intron 1 of 9)	1359.0	NM_145417	215615.0	Mm.291048	NM_145417	ENSMUSG00000041926	Rnpep	-	arginyl aminopeptidase (aminopeptidase B)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-84583602-4	chr16	84583493	84583693	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-96196.0	NR_040537	78023.0	Mm.243853	NR_040537		4930529L06Rik	-	RIKEN cDNA 4930529L06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-49576487-3	chr18	49576384	49576584	+	946.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53195.0	NR_033785	67321.0	Mm.245802	NR_033785	ENSMUSG00000100297	1700044K03Rik	-	RIKEN cDNA 1700044K03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106428255-4	chr11	106428145	106428345	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023913, intron 5 of 21)	intron (NM_023913, intron 5 of 21)	-45464.0	NM_010494	15896.0	Mm.394	NM_010494	ENSMUSG00000001029	Icam2	CD102|Icam-2|Ly-60	intercellular adhesion molecule 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-44401890-3	chr19	44401786	44401986	+	980.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009127, exon 4 of 6)	exon (NM_009127, exon 4 of 6)	5823.0	NM_009127	20249.0	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44069578-2	chr9	44069478	44069678	+	607.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016808, intron 1 of 12)	intron (NM_016808, intron 1 of 12)	149.0	NM_016808	53376.0	Mm.272770	NM_016808	ENSMUSG00000032010	Usp2	B930035K21Rik|Ubp41	ubiquitin specific peptidase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166793761-4	chr2	166793666	166793866	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023815)	promoter-TSS (NM_023815)	-1.0	NM_023815	76367.0	Mm.330796	NM_023815	ENSMUSG00000042854	Trp53rkb	2810408M09Rik|4933401B08Rik|5630401H01Rik|Nori-2|PRPK|Tp53rk|Trp53rk|Trp53tk|mNori-2p	transformation related protein 53 regulating kinase B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-55909753-4	chr7	55909683	55909883	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011370, intron 22 of 30)	MLT1C|LTR|ERVL-MaLR	52710.0	NM_001256133	93790.0	Mm.37249	NM_023647	ENSMUSG00000030452	Nipa2	2600017P10Rik|3830408P04Rik|AB041581	non imprinted in Prader-Willi/Angelman syndrome 2 homolog (human)	protein-coding	-1.32440223303897	-1.29339468673833	-0.717877708899544	-1.31276353204239	-1.32392690786997	-1.29109028300231	-1.30162128075409	-1.31119997543009	-2.49510383040271	0.470258445164311	1
Merged-chr1-54762734-3	chr1	54762683	54762883	+	606.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081433, intron 7 of 27)	intron (NM_001081433, intron 7 of 27)	163604.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	-0.953721354153451	-1.41025554057125	-1.42001056191158	-1.42802362688808	-1.44024889148474	-1.40814158675276	-1.41780223890411	-1.42658929208844	-2.11310844444413	0.543369238581748	1
Merged-chr13-85508001-4	chr13	85507914	85508114	+	979.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-218528.0	NM_145452	218397.0	Mm.259653	NM_145452	ENSMUSG00000021549	Rasa1	Gap|RasGAP|Rasa	RAS p21 protein activator 1	protein-coding	1.97871933870765	1.53271875550409	0.93701133208835	1.67417021791784	1.24081954769745	0.95672053165203	1.84766978514741	1.29857335354803	-0.703732888981318	0.578467693404471	0.965985075107763
Merged-chr5-137630775-4	chr5	137630657	137630857	+	997.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033148, intron 1 of 21)	intron (NR_033148, intron 1 of 21)	1634.0	NR_033148	100316903.0	Mm.200763	NR_033148		Gm20605	Lrch4-sap25	predicted gene 20605	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-13498902-3	chr12	13498798	13498998	+	859.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027706, intron 44 of 51)	intron (NM_027706, intron 44 of 51)	128748.0	NR_136761	102639399.0	Mm.122052	NR_136761	ENSMUSG00000113666	Gm35725	-	predicted gene, 35725	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-35813352-2	chr1	35813252	35813452	+	862.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTRIS_Mm|LTR|ERV1	-255048.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-88693634-4	chr4	88693537	88693737	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2369.0	NM_008336	15974.0	Mm.377093	NM_008336	ENSMUSG00000100079	Ifnab	-	interferon alpha B	protein-coding	2.86518624886741	3.11577735418277	2.50554232562761	3.75708139187633	2.79562642570617	2.23974856513988	3.60048660709191	3.21042626652707	-0.150711397290451	0.826306674690652	0.998431161219273
Merged-chr11-113450259-3	chr11	113450154	113450354	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027216, intron 5 of 9)	MTD|LTR|ERVL-MaLR	115561.0	NM_001166503	69806.0	Mm.341021	NM_027216	ENSMUSG00000041654	Slc39a11	1810074D23Rik	solute carrier family 39 (metal ion transporter), member 11	protein-coding	2.55897434699535	1.93572854447821	1.54833974406373	2.85260169994979	3.54908509451496	4.03956621273514	4.22563576885624	4.62296651361481	2.90460473138897	8.51828805090635e-06	0.000400270574548725
Merged-chr15-101244850-1	chr15	101244750	101244950	+	947.0	f1_balb.idr	Intergenic	Intergenic	-19664.0	NR_045328	380977.0	Mm.399924	NR_045326	ENSMUSG00000097915	A330009N23Rik	-	RIKEN cDNA A330009N23 gene	ncRNA	0.778650310285527	1.52905262015365	0.8352506577671	0.814234315562308	1.33366062489075	1.04449015383216	0.643339458562365	0.972003929638864	-0.0462460365246279	0.974129238408188	0.998431161219273
Merged-chr1-181922246-4	chr1	181922163	181922363	+	973.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010135, exon 7 of 15)	exon (NM_010135, exon 7 of 15)	-79862.0	NM_133815	98386.0	Mm.4538	NM_133815	ENSMUSG00000004880	Lbr	AI505894|ic	lamin B receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-113304961-2	chr6	113304861	113305061	+	760.875	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_170673, exon 20 of 20)	3' UTR (NM_170673, exon 20 of 20)	-2176.0	NM_030178	78783.0	Mm.356059	NM_030178	ENSMUSG00000001632	Brpf1	4833438B11Rik|4930540D11Rik|Brpf2	bromodomain and PHD finger containing, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-143623984-3	chr5	143623935	143624135	+	782.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011182, intron 1 of 12)	intron (NM_011182, intron 1 of 12)	1588.0	NM_011182	19159.0	Mm.281003	NM_011182	ENSMUSG00000018001	Cyth3	AI648983|ARNO3|CLM3|Grp1|Pscd3	cytohesin 3	protein-coding	-1.06749048699405	-1.18409811726534	-1.19455639931541	-1.20314714357788	-0.732344966823593	-1.18183176391733	-1.19218887349829	-1.20160940446224	1.4740915481595	0.659875114534777	1
Merged-chr9-90267031-2	chr9	90266931	90267131	+	621.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 1 of 12)	intron (NM_194334, intron 1 of 12)	3738.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-63380704-2	chr10	63380603	63380803	+	910.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1740.0	NM_001253685	30045.0	Mm.32550	NM_013888	ENSMUSG00000036764	Dnajc12	Jdp1|mJDP1	DnaJ heat shock protein family (Hsp40) member C12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-80138826-2	chr11	80138726	80138926	+	571.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183275, intron 2 of 3)	RSINE1|SINE|B4	3327.0	NM_183275	68550.0	Mm.18466	NM_183275	ENSMUSG00000046909	Tefm	1110002N22Rik	transcription elongation factor, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-7553747-3	chr9	7553647	7553847	+	668.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4682.0	NM_008611	17394.0	Mm.16415	NM_008611	ENSMUSG00000005800	Mmp8	BB138268	matrix metallopeptidase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-80197274-2	chr18	80197174	80197374	+	555.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_199197, exon 3 of 6)	exon (NM_199197, exon 3 of 6)	3345.0	NM_199197	68731.0	Mm.186936	NM_199197	ENSMUSG00000024570	Rbfa	1110032A13Rik|AI595940	ribosome binding factor A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-173173192-2	chr2	173173092	173173292	+	591.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20119.0	NM_011044	18534.0	Mm.266867	NM_011044	ENSMUSG00000027513	Pck1	AI265463|PEPCK|PEPCK-C|Pck-1	phosphoenolpyruvate carboxykinase 1, cytosolic	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-79496166-4	chr7	79496070	79496270	+	996.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-3856.0	NR_040311	101694.0	Mm.41661	NR_040311	ENSMUSG00000097023	Mir9-3hg	AI854517	Mir9-3 host gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153121943-6	chr2	153121842	153122042	+	898.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001172117, intron 1 of 12)	intron (NM_001172117, intron 1 of 12)	13474.0	NM_010407	15162.0	Mm.715	NM_010407	ENSMUSG00000003283	Hck	AI849071|Bmk	hemopoietic cell kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-69343732-2	chr18	69343632	69343832	+	679.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013685)	promoter-TSS (NM_013685)	-760.0	NM_013685	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52034443-6	chr13	52034345	52034545	+	742.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62296.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72148271-2	chr6	72148171	72148371	+	750.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001035228, intron 5 of 6)	RSINE1|SINE|B4	-25074.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-91669399-3	chr6	91669319	91669519	+	700.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-14648.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-105500443-3	chr5	105500355	105500555	+	928.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19016.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6919860-2	chr19	6919760	6919960	+	812.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_007953, intron 2 of 6)	ID_B1|SINE|B4	1948.0	NM_007953	26379.0	Mm.386776	NM_007953	ENSMUSG00000024955	Esrra	ERRalpha|Err1|Estrra|Nr3b1	estrogen related receptor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122282707-2	chr8	122282607	122282807	+	870.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_009569, intron 1 of 9)	CpG	566.0	NM_009569	22761.0	Mm.3105	NM_009569	ENSMUSG00000049577	Zfpm1	FOG|Fog1	zinc finger protein, multitype 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-3300411-4	chr7	3300310	3300510	+	892.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3122.0	NM_001291434	18752.0	Mm.7980	NM_011102	ENSMUSG00000078816	Prkcg	PKCgamma|Pkcc|Prkcc	protein kinase C, gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-6282977-4	chr7	6282863	6283063	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-3617.0	NM_001024928	384763.0	Mm.276279	NM_001024928	ENSMUSG00000054893	Zfp667	A830025F02Rik|Mip1|ZNF667	zinc finger protein 667	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-97717956-3	chr15	97717874	97718074	+	726.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008902, intron 5 of 8)	URR1B|DNA|hAT-Charlie	3176.0	NM_008902	19011.0	Mm.1001	NM_008902	ENSMUSG00000022468	Endou	Pp11r|Tcl-30	endonuclease, polyU-specific	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-98677613-4	chr12	98677506	98677706	+	964.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011877, exon 19 of 19)	3' UTR (NM_011877, exon 19 of 19)	49464.0	NM_001289574	104871.0	Mm.210053	NM_178914	ENSMUSG00000021007	Spata7	AI661438|B230306G18Rik|HSD3	spermatogenesis associated 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-31020271-2	chr17	31020171	31020371	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37423.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-39364313-1	chr18	39364213	39364413	+	554.5	f1_balb.idr	intron (NM_001361073, intron 21 of 21)	MIR|SINE|MIR	122932.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	-1.56355737717652	-1.81244775989375	-1.82128546162293	-1.82854501295842	-1.83962066705452	-1.81053259306168	-1.81928479966835	-1.82724555674025	-1.28500227969968	0.715751224811686	1
Merged-chr9-99245593-2	chr9	99245493	99245693	+	557.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023873, intron 1 of 17)	intron (NM_023873, intron 1 of 17)	2252.0	NM_023873	68121.0	Mm.288739	NM_023873	ENSMUSG00000056267	Cep70	6720484E09Rik|Bite|C030018L16Rik	centrosomal protein 70	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-77543352-4	chr10	77543259	77543459	+	935.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008404, intron 3 of 15)	MTE2b|LTR|ERVL-MaLR	13011.0	NM_008404	16414.0	Mm.1137	NM_008404	ENSMUSG00000000290	Itgb2	2E6|AI528527|Cd18|LAD|LCAMB|Lfa1|MF17	integrin beta 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97433316-3	chr11	97433217	97433417	+	894.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16843.0	NM_021493	58996.0	Mm.394118	NM_021493	ENSMUSG00000049807	Arhgap23	A330041B18Rik	Rho GTPase activating protein 23	protein-coding	-1.43172712806865	-1.3992492906874	-1.40907085678131	-1.41713858359971	-0.932192548427885	-1.39712091634321	-1.40684746950024	-1.41569446435649	2.19283191591698	0.528233640655333	1
Merged-chr19-8982873-4	chr19	8982838	8983038	+	953.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6346.0	NR_104460	66395.0	Mm.203866	NM_009643	ENSMUSG00000069833	Ahnak	DY6	AHNAK nucleoprotein (desmoyokin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99253058-2	chr15	99252958	99253158	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045627, intron 1 of 2)	MTD|LTR|ERVL-MaLR	-1097.0	NM_016766	51812.0	Mm.383472	NM_016766	ENSMUSG00000037570	Mcrs1	C78274|ICP22BP|MSP58|P78	microspherule protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-148874685-3	chr2	148874610	148874810	+	850.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009976, intron 1 of 2)	intron (NM_009976, intron 1 of 2)	802.0	NM_009976	13010.0	Mm.4263	NM_009976	ENSMUSG00000027447	Cst3	CysC	cystatin C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-9906013-3	chr1	9905909	9906109	+	722.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2629.0	NM_177722	240697.0	Mm.259800	NM_177722	ENSMUSG00000046101	Mcmdc2	6030422M02Rik	minichromosome maintenance domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80824411-3	chr10	80824324	80824524	+	890.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2232.0	NM_001301034	18245.0	Mm.398119	NM_008753	ENSMUSG00000035242	Oaz1	AZ-1|AZ1|Antizyme|ODC-Az|Oaz	ornithine decarboxylase antizyme 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-116989502-4	chr2	116989407	116989607	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	89355.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-151585842-4	chr1	151585752	151585952	+	749.962524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022018, intron 1 of 13)	intron (NM_022018, intron 1 of 13)	14479.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-154105491-2	chr4	154105389	154105589	+	751.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011642, intron 1 of 13)	intron (NM_011642, intron 1 of 13)	-8316.0	NM_001126331	22062.0	Mm.78015	NM_011642	ENSMUSG00000029026	Trp73	TAp73|Tp73|deltaNp73|p73	transformation related protein 73	protein-coding	-0.650761878319711	-0.635482840913924	-0.640435313937718	-0.644291276427143	-0.475273665710137	-0.634373419370071	0.422210965449921	-0.643615416377743	3.70639204521555	0.161823282136615	1
Merged-chr7-80347474-2	chr7	80347374	80347574	+	562.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4337.0	NM_026812	68695.0	Mm.21171	NM_026812	ENSMUSG00000030532	Hddc3	1110033O09Rik|C86475|MESH1	HD domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-30589894-3	chr14	30589802	30590002	+	648.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17753.0	NR_037237	100526475.0		NR_037237	ENSMUSG00000093156	Mir3076	mir-3076|mmu-mir-3076	microRNA 3076	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126583350-4	chr7	126583222	126583422	+	879.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001329789)	promoter-TSS (NM_001329789)	-86.0	NM_009907	12752.0	Mm.268930	NM_009907	ENSMUSG00000030720	Cln3	AI323623	ceroid lipofuscinosis, neuronal 3, juvenile (Batten, Spielmeyer-Vogt disease)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-21717612-4	chr13	21717542	21717742	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178206)	promoter-TSS (NM_178206)	14.0	NM_178206	319152.0	Mm.377874	NM_178206	ENSMUSG00000101355	Hist1h3h	H3-291	histone cluster 1, H3h	protein-coding	2.80978852910046	3.27541687031126	3.16474806412951	3.26492889280104	3.60952812081556	3.49860625472634	3.76750577650303	3.83779196519877	0.872764284569089	0.105255131238724	0.505892575341078
Merged-chr8-11103505-2	chr8	11103405	11103605	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-95075.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-107794736-1	chr13	107794636	107794836	+	558.0	f0_balb.idr	intron (NM_145456, intron 2 of 14)	L1MA5|LINE|L1	95328.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-34110108-2	chr16	34110008	34110208	+	809.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177357, intron 34 of 59)	intron (NM_177357, intron 34 of 59)	-143070.0	NM_009471	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-87286925-2	chr17	87286825	87287025	+	843.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_028639, intron 1 of 19)	intron (NM_028639, intron 1 of 19)	4039.0	NM_028639	225049.0	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-84143311-4	chr7	84143198	84143398	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133722, intron 1 of 2)	intron (NM_133722, intron 1 of 2)	8595.0	NM_133722	70178.0	Mm.23914	NM_133722	ENSMUSG00000038459	Abhd17c	2210412D01Rik|AL023007|Fam108c|Fam108c1	abhydrolase domain containing 17C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-86779415-4	chr6	86779326	86779526	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013471, intron 1 of 12)	L1M1|LINE|L1	-4312.0	NM_001331120	11746.0	Mm.259702	NM_013471	ENSMUSG00000029994	Anxa4	AI265406|AIV|AW106930|Anx4|Xanx-4	annexin A4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101998688-3	chr7	101998577	101998777	+	851.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_133947, exon 14 of 25)	exon (NM_133947, exon 14 of 25)	19478.0	NM_010531	16068.0	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	2.99557886121819	2.89446709376235	2.79904330156276	2.20462967303175	2.9481286439527	3.20726039374739	2.82051732170742	2.36899677154589	0.209703159121667	0.76512466883358	0.998431161219273
Merged-chr12-36190570-4	chr12	36190467	36190667	+	928.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146033, intron 7 of 9)	intron (NM_146033, intron 7 of 9)	27651.0	NM_027699	71156.0	Mm.250837	NM_027699	ENSMUSG00000020545	Lrrc72	1700108M19Rik|4933421E18Rik	leucine rich repeat containing 72	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-39526565-2	chr1	39526465	39526665	+	588.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9136.0	NM_028043	52846.0	Mm.259421	NM_028043	ENSMUSG00000003135	Cnot11	2410015L18Rik|C40|D1Bwg0212e	CCR4-NOT transcription complex, subunit 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53160897-2	chr4	53160797	53160997	+	975.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-1002.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-19698939-2	chr8	19698839	19699039	+	835.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30637.0	NM_001270553	100861668.0	Mm.491087	NM_001270553	ENSMUSG00000095294	Gm21119	-	predicted gene, 21119	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-84678897-2	chr18	84678797	84678997	+	927.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023149, intron 3 of 11)	intron (NM_023149, intron 3 of 11)	3162.0	NM_001289531	66054.0	Mm.29646	NM_023149	ENSMUSG00000024644	Cndp2	0610010E05Rik|C76600|Cn2|Dip-2|Pep-1|Pep1	CNDP dipeptidase 2 (metallopeptidase M20 family)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152582985-3	chr1	152582867	152583067	+	853.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 3 of 17)	Arthur1|DNA|hAT-Tip100	42250.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-17587239-2	chr10	17587139	17587339	+	671.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-135989.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-44582296-2	chr13	44582196	44582396	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	142569.0	NR_045489	69491.0	Mm.392410	NR_045489	ENSMUSG00000098144	1700029N11Rik	-	RIKEN cDNA 1700029N11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-70970960-2	chr12	70970860	70971060	+	999.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3663.0	NM_001310595	19167.0	Mm.296338	NM_011184	ENSMUSG00000060073	Psma3	Lmpc8	proteasome (prosome, macropain) subunit, alpha type 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-45850741-2	chr13	45850641	45850841	+	603.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199304, intron 3 of 6)	intron (NM_001199304, intron 3 of 6)	114250.0	NM_001199304	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-39831389-4	chr5	39831278	39831478	+	758.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-186747.0	NM_010474	15476.0	Mm.12559	NM_010474	ENSMUSG00000051022	Hs3st1	3-Ost|D5Wsu110e|Hsg3ost	heparan sulfate (glucosamine) 3-O-sulfotransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70254607-2	chr11	70254507	70254707	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_007440, exon 2 of 14)	exon (NM_007440, exon 2 of 14)	763.0	NM_001331118	11684.0	Mm.12286	NM_007440	ENSMUSG00000000320	Alox12	9930022G08Rik|Alox12p|P-12LO	arachidonate 12-lipoxygenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69855482-2	chr11	69855382	69855582	+	823.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_031880, intron 7 of 13)	intron (NM_031880, intron 7 of 13)	3248.0	NM_031880	83813.0	Mm.28874	NM_031880	ENSMUSG00000001583	Tnk1	Kos1|Tnk1a|Tnk1b	tyrosine kinase, non-receptor, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-34803203-2	chr2	34803103	34803303	+	709.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-3291.0	NM_145522	227746.0	Mm.158705	NM_145522	ENSMUSG00000070953	Rabepk	8430412M01Rik|9530020D24Rik|AV073337|C87311|Rab9p40	Rab9 effector protein with kelch motifs	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107983794-2	chr9	107983694	107983894	+	973.75	f1_balb.idr|f1_c57bl6.idr	TTS (NM_026597)	TTS (NM_026597)	2122.0	NM_026597	68176.0	Mm.76166	NM_026597	ENSMUSG00000042106	Fam212a	6230427J02Rik|Inka1	family with sequence similarity 212, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-3691158-2	chr7	3691058	3691258	+	581.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029934, intron 4 of 7)	intron (NM_029934, intron 4 of 7)	2367.0	NM_029934	77582.0	Mm.397541	NM_029934	ENSMUSG00000035596	Mboat7	5730589L02Rik|BB1|Leng4|Lpiat|Lpiat1|mBB1	membrane bound O-acyltransferase domain containing 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-9490673-4	chr18	9490585	9490785	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40531.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-16637648-3	chr1	16637561	16637761	+	813.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-18323.0	NM_001271017	66799.0	Mm.122430	NM_025773	ENSMUSG00000025939	Ube2w	6130401J04Rik	ubiquitin-conjugating enzyme E2W (putative)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-121719916-3	chr9	121719809	121720009	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010918, intron 2 of 16)	CpG-15515	728.0	NM_010918	18087.0	Mm.32842	NM_010918	ENSMUSG00000032525	Nktr	5330401F18Rik|D9Wsu172e	natural killer tumor recognition sequence	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-100211867-4	chr6	100211751	100211951	+	852.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	75507.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-6651138-2	chr13	6651038	6651238	+	782.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2367.0	NM_001291071	56421.0	Mm.273874	NM_019703	ENSMUSG00000021196	Pfkp	1200015H23Rik|9330125N24Rik|ATP-PFK|PFK-C|PFK-P	phosphofructokinase, platelet	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-99264537-4	chr12	99264441	99264641	+	992.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183186, intron 4 of 5)	intron (NM_183186, intron 4 of 5)	-101733.0	NR_038130	67639.0	Mm.87374	NR_038130	ENSMUSG00000113210	4930474N09Rik	-	RIKEN cDNA 4930474N09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-95640169-4	chr9	95640154	95640354	+	990.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029620, intron 2 of 8)	intron (NM_029620, intron 2 of 8)	2626.0	NM_029620	76477.0	Mm.46016	NM_029620	ENSMUSG00000015354	Pcolce2	2400001O18Rik|Pcpe2	procollagen C-endopeptidase enhancer 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27846135-2	chr17	27846035	27846235	+	561.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011432, intron 4 of 5)	PB1D7|SINE|Alu	6048.0	NM_011432	20630.0	Mm.103949	NM_011432	ENSMUSG00000024217	Snrpc	Snrp1c|U1-C|U1C	U1 small nuclear ribonucleoprotein C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-51007095-4	chr9	51006996	51007196	+	734.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178710, intron 1 of 15)	intron (NM_178710, intron 1 of 15)	1977.0	NM_178710	235344.0	Mm.104932	NM_178710	ENSMUSG00000037112	Sik2	G630080D20Rik|Snf1lk2	salt inducible kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-25300746-2	chr15	25300646	25300846	+	639.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	113018.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80191580-4	chr7	80191410	80191610	+	897.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013659, intron 1 of 14)	intron (NM_013659, intron 1 of 14)	4669.0	NM_013659	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-44267861-2	chr10	44267761	44267961	+	610.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053069)	promoter-TSS (NM_053069)	-478.0	NM_001314013	11793.0	Mm.22264	NM_053069	ENSMUSG00000038160	Atg5	2010107M05Rik|3110067M24Rik|AW319544|Apg5l|Atg5l|C88337|Paddy	autophagy related 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26012311-4	chr17	26012235	26012435	+	936.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162869, intron 5 of 14)	intron (NM_001162869, intron 5 of 14)	9525.0	NM_153140	215445.0	Mm.41191	NM_153140	ENSMUSG00000037098	Rab11fip3	Cart1|D030060O14Rik|Rab11-FIP3|mKIAA0665	RAB11 family interacting protein 3 (class II)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-41713945-1	chr4	41713845	41714045	+	733.0	f0_c57.idr	promoter-TSS (NM_027278)	promoter-TSS (NM_027278)	-428.0	NM_027278	69961.0	Mm.425182	NM_027278	ENSMUSG00000036114	Rpp25l	2810432D09Rik|AW987258|Rppl25	ribonuclease P/MRP 25 subunit-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-42895922-1	chr16	42895822	42896022	+	793.0	f0_balb.idr	intron (NR_040402, intron 2 of 3)	Charlie7|DNA|hAT-Charlie	-11723.0	NM_001285805	56490.0	Mm.136238	NM_019778	ENSMUSG00000022708	Zbtb20	1300017A20Rik|7330412A13Rik|A930017C21Rik|D16Wsu73e|DPZF|HOF|J20|ODA-8S|Oda8|Tg(PDGFB-APPSwInd)20Lms|Zfp288	zinc finger and BTB domain containing 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-43792626-2	chr13	43792526	43792726	+	575.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009856, intron 2 of 4)	B4A|SINE|B4	7514.0	NM_001289915	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127566672-2	chr10	127566572	127566772	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008512, exon 41 of 89)	exon (NM_008512, exon 41 of 89)	-32113.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	2.24483057694484	0.97997534701519	0.690131919279666	2.08457406878829	0.869819967022983	0.714338528123948	1.33360760097658	0.677114683528332	-2.59947917309659	0.0726489658853341	0.406912870733597
Merged-chr16-55975104-4	chr16	55975005	55975205	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027965)	promoter-TSS (NR_027965)	-488.0	NR_027965	66391.0	Mm.472722	NM_133677	ENSMUSG00000102101	Zbtb11os1	2310061J03Rik	zinc finger and BTB domain containing 11, opposite strand 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5926854-2	chr19	5926754	5926954	+	684.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-2038.0	NM_026772	104252.0	Mm.491103	NM_026772	ENSMUSG00000045664	Cdc42ep2	1110008C05Rik|Borg1|Cep2|D19Bwg1013e	CDC42 effector protein (Rho GTPase binding) 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-103425123-4	chr9	103425032	103425232	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001002896, exon 7 of 7)	3' UTR (NM_001002896, exon 7 of 7)	1554.0	NR_040466	100529079.0	Mm.437003	NR_040466	ENSMUSG00000086236	5830418P13Rik	-	RIKEN cDNA 5830418P13 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-28622721-2	chr2	28622621	28622821	+	562.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008114)	promoter-TSS (NM_008114)	-739.0	NM_001160406	14582.0	Mm.373385	NM_008114	ENSMUSG00000026815	Gfi1b	Gfi-1B	growth factor independent 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-147227947-1	chr3	147227847	147228047	+	544.0	f1_balb.idr	Intergenic	Intergenic	375580.0	NM_001302957	70892.0	Mm.187793	NM_027594	ENSMUSG00000036745	Ttll7	1110049N09Rik|4921517B04Rik|C630030B20|mTTLL7	tubulin tyrosine ligase-like family, member 7	protein-coding	0.939631014747145	0.605841799459718	0.598902692407007	0.745486074246615	1.0439154399295	1.08310187332261	0.76808313498482	1.27547041565583	1.96893984865543	0.205567104739965	1
Merged-chr3-48612944-1	chr3	48612844	48613044	+	598.0	f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-3844.0	NR_003617	66332.0	Mm.46124	NM_025493		1700018B24Rik	-	enhancer of rudimentary homolog pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115072814-2	chr11	115072714	115072914	+	999.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10775.0	NM_172050	217306.0	Mm.222667	NM_172050	ENSMUSG00000048498	Cd300e	BC034097|CLM2|Cd300le|TREM5	CD300E molecule	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-8617548-2	chr6	8617448	8617648	+	756.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	97490.0	NM_001286729	170772.0	Mm.210787	NM_133236	ENSMUSG00000029638	Glcci1	2310047L21Rik|A130036A18Rik|Fam117c|Gig18|Tssn1	glucocorticoid induced transcript 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-130470431-2	chr10	130470331	130470531	+	581.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-14537.0	NM_001103365	625109.0	Mm.469845	NM_001103365	ENSMUSG00000092162	Vmn2r86	EG625109	vomeronasal 2, receptor 86	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-165193468-4	chr1	165193321	165193521	+	943.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151711, intron 1 of 6)	intron (NR_151711, intron 1 of 6)	1012.0	NM_145512	108735.0	Mm.288369	NM_145512	ENSMUSG00000040848	Sft2d2	2010005O13Rik|AI506168|AW561909|cI-45	SFT2 domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81139887-2	chr10	81139787	81139987	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010731, intron 1 of 2)	intron (NM_010731, intron 1 of 2)	3616.0	NM_010731	16969.0	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-108997485-4	chr3	108997378	108997578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163567, intron 2 of 10)	intron (NM_001163567, intron 2 of 10)	30129.0	NM_001163567	329739.0	Mm.69013	NM_001163567	ENSMUSG00000040339	Fam102b	1600010D10Rik|B430201A12Rik	family with sequence similarity 102, member B	protein-coding	4.07210473925395	3.32676430889153	4.72392819853776	4.41072942661593	3.84350953125831	3.57970136717243	4.21025415313506	3.53213604386462	-0.563022151350726	0.246042192288991	0.74533266026342
Merged-chr12-51971392-4	chr12	51971307	51971507	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177171)	promoter-TSS (NM_177171)	-86.0	NM_177171	320487.0	Mm.131941	NM_177171	ENSMUSG00000035181	Heatr5a	C230081H03Rik|D930036F22Rik|mKIAA1316	HEAT repeat containing 5A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-103342062-4	chr14	103341927	103342127	+	980.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207215, intron 1 of 84)	intron (NM_207215, intron 1 of 84)	4773.0	NM_207215	105689.0	Mm.6478	NM_207215	ENSMUSG00000033004	Mycbp2	AU023734|AW107953|AW546647|C130061D10Rik|Pam|Phr1|R75243	MYC binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-85441818-1	chr13	85441718	85441918	+	844.6666869999999	f0_balb.idr	Intergenic	MurERV4_19-int|LTR|ERVK	-152332.0	NM_145452	218397.0	Mm.259653	NM_145452	ENSMUSG00000021549	Rasa1	Gap|RasGAP|Rasa	RAS p21 protein activator 1	protein-coding	0.6471058291396	0.902984712911967	0.507074806378248	0.499547267959716	1.28317589311875	1.30840984469741	0.509215634000577	0.973187061717616	2.26771223272942	0.172090572048043	1
Merged-chr7-30669446-4	chr7	30669338	30669538	+	740.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	2167.0	NR_027849	74927.0	Mm.87326	NM_183108	ENSMUSG00000049761	Pmis2	1700071L20Rik|4930479M11Rik	Pmis2, sperm specific protein	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5174609-3	chr17	5174508	5174708	+	872.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 4 of 19)	intron (NM_001085355, intron 4 of 19)	179534.0	NM_001085355	239985.0	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117785413-2	chr10	117785313	117785513	+	564.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_134010, intron 4 of 27)	B3|SINE|B2	7292.0	NM_134010	103468.0	Mm.12568	NM_134010	ENSMUSG00000052798	Nup107	AW541137|C76801	nucleoporin 107	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-106592719-2	chr14	106592619	106592819	+	781.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	-106199.0	NR_045938	73631.0	Mm.48862	NR_045938	ENSMUSG00000099794	1700128A07Rik	-	RIKEN cDNA 1700128A07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-165669105-4	chr1	165669014	165669214	+	980.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038846, intron 1 of 5)	intron (NM_001038846, intron 1 of 5)	-34573.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167804436-4	chr2	167804262	167804462	+	933.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	113185.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80439523-2	chr7	80439410	80439610	+	686.75	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-34074.0	NM_001081454	18550.0	Mm.5241	NM_011046	ENSMUSG00000030530	Furin	9130404I01Rik|Fur|PACE|Pcsk3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding	0.0820503227294828	0.916614155756896	0.131358464719945	-0.0687049504129083	-0.07578793421116	0.337397947464221	-0.062309438756203	-0.0678333409050494	-2.22372962814756	0.299297330324456	1
Merged-chr11-54787713-4	chr11	54787596	54787796	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178626)	promoter-TSS (NM_178626)	7.0	NM_178626	72729.0	Mm.29476	NM_178626	ENSMUSG00000052298	Cdc42se2	2810404F18Rik|AA408783|AA536669|SPEC2	CDC42 small effector 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-136573686-3	chr1	136573591	136573791	+	804.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51210.0	NM_177643	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-78414181-2	chr10	78414081	78414281	+	552.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-1138.0	NM_010925	18114.0	Mm.38344	NM_010925	ENSMUSG00000061032	Rrp1	AL033305|AL033306|AU018604|NNP-1|Nnp1	ribosomal RNA processing 1 homolog (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167767914-2	chr2	167767814	167768014	+	934.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	76737.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-49008171-4	chr6	49008062	49008262	+	737.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8546.0	NR_126454	75347.0	Mm.207324	NR_126454	ENSMUSG00000107656	4930563H07Rik	-	RIKEN cDNA 4930563H07 gene	ncRNA	3.32487320123915	2.71525815785159	3.07091394289417	2.40635911602958	2.94140852613859	3.37764384807317	2.14077229520826	3.45088987035392	0.250009472598451	0.718970422753497	0.998431161219273
Merged-chr9-105133469-1	chr9	105133369	105133569	+	577.0	f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-1664.0	NM_029385	75686.0	Mm.305810	NM_029385	ENSMUSG00000032565	Nudt16	2310041H06Rik|2810047L04Rik|2900006H04Rik|AI851783	nudix (nucleoside diphosphate linked moiety X)-type motif 16	protein-coding	1.84386798928874	1.14703919008325	2.22707133092636	2.33634552956077	1.8599448356273	1.15266337924358	1.37473179737297	2.50091578437151	-0.316804987363176	0.7803033892501	0.998431161219273
Merged-chr18-24652789-4	chr18	24652698	24652898	+	839.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026779)	promoter-TSS (NM_026779)	-893.0	NM_026779	68591.0	Mm.28252	NM_026779	ENSMUSG00000039616	Mocos	1110018O12Rik|HMCS|MCS|MOS	molybdenum cofactor sulfurase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-28080084-2	chr5	28079984	28080184	+	608.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8672.0	NM_153526	231070.0	Mm.30221	NM_153526	ENSMUSG00000045294	Insig1	1810013C12Rik|Insig-1	insulin induced gene 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-16312856-4	chr9	16312751	16312951	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080814, intron 1 of 24)	intron (NM_001080814, intron 1 of 24)	65380.0	NM_001080814	270120.0	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT atypical cadherin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-50034157-3	chr18	50034050	50034250	+	937.2666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360935, intron 1 of 1)	intron (NM_001360935, intron 1 of 1)	3166.0	NM_001360935	106869.0	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-8743058-4	chr10	8742961	8743161	+	928.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 12 of 19)	intron (NM_175155, intron 12 of 19)	143009.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	2.65527035532793	2.62419505305597	2.53461798155601	2.89310317753074	2.22059739375343	3.6855279119925	2.90327429309407	2.33564733846621	0.454727294915576	0.538637431205481	0.954314144619457
Merged-chr6-65144255-2	chr6	65144155	65144355	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019455, intron 1 of 5)	(CA)n|Simple_repeat|Simple_repeat	475.0	NM_019455	54486.0	Mm.410688	NM_019455	ENSMUSG00000029919	Hpgds	H-PGDS|Ptgds2	hematopoietic prostaglandin D synthase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117145825-8	chr10	117145760	117145960	+	902.9345089999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177798, intron 1 of 9)	intron (NM_177798, intron 1 of 9)	2614.0	NM_177798	327826.0	Mm.135965	NM_177798	ENSMUSG00000020170	Frs2	4732458E18|C330018A15Rik|Frs2alpha|SNT1	fibroblast growth factor receptor substrate 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-23225310-4	chr16	23225238	23225438	+	939.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252505)	promoter-TSS (NM_001252505)	146.0	NR_152126	320099.0	Mm.326729	NR_152126		BC106179	-	cDNA sequence BC106179	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-93429582-1	chr16	93429482	93429682	+	638.0	f0_balb.idr	intron (NR_040494, intron 1 of 2)	intron (NR_040494, intron 1 of 2)	29290.0	NR_040494	72264.0	Mm.396204	NR_040494	ENSMUSG00000099968	1700029J03Rik	-	RIKEN cDNA 1700029J03 gene	ncRNA	-0.356476364334238	-0.00027765924860701	-0.489361833128438	-0.492230238304679	-0.496275053088451	0.00893465027867191	-0.488540917762579	-0.491729497877821	-0.270522364052869	0.917168158447674	1
Merged-chr12-73310306-3	chr12	73310203	73310403	+	732.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037717, intron 4 of 15)	intron (NM_001037717, intron 4 of 15)	23455.0	NM_001037717	625098.0	Mm.32075	NM_001037717	ENSMUSG00000044712	Slc38a6	AW322671|EG625098	solute carrier family 38, member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-23550485-4	chr17	23550419	23550619	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_126485)	promoter-TSS (NR_126485)	-280.0	NR_126485	320020.0	Mm.445111	NR_126484		6330415G19Rik	-	RIKEN cDNA 6330415G19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-149854577-1	chr4	149854477	149854677	+	656.0	f1_balb.idr	Intergenic	Intergenic	-80310.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	0.412041254199313	0.357659877404842	0.161778969962427	0.157245809695049	0.150839958761827	0.782051167503527	0.340678983525268	0.688680397308168	1.79716427733083	0.350575151016167	1
Merged-chr17-29381645-4	chr17	29381546	29381746	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20732.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	6.12611267330871	6.24431274897135	6.42746387818508	6.83215560146595	6.6492330601177	5.88899064126894	6.35253794036341	6.05842528110107	-0.171746631533704	0.475445847717132	0.927343103251982
Merged-chr10-93095987-4	chr10	93095890	93096090	+	978.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MDa|LINE|L1	-14394.0	NM_001347060	380654.0	Mm.34980	NM_001347060	ENSMUSG00000020014	Cfap54	4930485B16Rik|Gm872	cilia and flagella associated protein 54	protein-coding	3.07074578066582	3.93843163243809	3.63103067839792	3.46533085819774	3.24828697736355	2.46492598088496	1.65041709542459	3.41194629191576	-1.1003810219214	0.108722325495643	0.516409525453966
Merged-chr17-63871164-1	chr17	63871064	63871264	+	826.0	f0_balb.idr	intron (NM_001037997, intron 1 of 18)	B4A|SINE|B4	-6902.0	NM_001286415	14158.0	Mm.23039	NM_008000	ENSMUSG00000000127	Fer	AV082135|C330004K01Rik|Fert|Fert2	fer (fms/fps related) protein kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-139978740-4	chr7	139978634	139978834	+	953.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347613)	promoter-TSS (NM_001347613)	21.0	NM_001347614	381933.0	Mm.440431	NM_001033465	ENSMUSG00000073795	6430531B16Rik	Gm1093	RIKEN cDNA 6430531B16 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-60757898-4	chr14	60757819	60758019	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033272, intron 11 of 12)	intron (NM_001033272, intron 11 of 12)	-10215.0	NM_183175	239126.0	Mm.319636	NM_183175	ENSMUSG00000071347	C1qtnf9	9130217G22Rik|CTRP9|Ciqtnf9	C1q and tumor necrosis factor related protein 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-153434009-4	chr1	153433912	153434112	+	914.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033162, intron 3 of 9)	MTD|LTR|ERVL-MaLR	8803.0	NM_001033162	71836.0	Mm.49460	NM_001033162	ENSMUSG00000042708	Shcbp1l	1700012A16Rik	Shc SH2-domain binding protein 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16214740-1	chr7	16214640	16214840	+	839.0	f1_balb.idr	intron (NM_027883, intron 4 of 16)	intron (NM_027883, intron 4 of 16)	7253.0	NM_001285931	71723.0	Mm.75259	NM_027883	ENSMUSG00000006019	Dhx34	1200013B07Rik|1810012L18Rik|Ddx34|mKIAA0134	DEAH (Asp-Glu-Ala-His) box polypeptide 34	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141266542-4	chr7	141266511	141266711	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252600)	promoter-TSS (NM_001252600)	-187.0	NM_001252600	54123.0	Mm.3233	NM_016850	ENSMUSG00000025498	Irf7	-	interferon regulatory factor 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-96646292-4	chr10	96646218	96646418	+	984.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29317.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-87854786-3	chr1	87854627	87854827	+	959.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_136921)	promoter-TSS (NR_136921)	-428.0	NR_136921	100503175.0	Mm.426422	NR_136921	ENSMUSG00000101942	Gm19582	-	predicted gene, 19582	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-137815671-3	chr4	137815570	137815770	+	742.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-19286.0	NM_007431	11647.0	Mm.288186	NM_007431	ENSMUSG00000028766	Alpl	ALP|APTNAP|Akp-2|Akp2|TNAP|TNSALP	alkaline phosphatase, liver/bone/kidney	protein-coding	2.33268438536641	2.19138141554259	2.63092523870616	1.89905401460176	2.62620632369437	2.3651470518413	2.74947243211885	2.91216687562977	0.850221984452306	0.275108826981371	0.77958330328826
Merged-chr7-24903335-2	chr7	24903235	24903435	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001130151, intron 1 of 29)	PB1D10|SINE|Alu	349.0	NM_001130151	16801.0	Mm.3181	NM_008488	ENSMUSG00000040940	Arhgef1	Lbcl2|Lsc	Rho guanine nucleotide exchange factor (GEF) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-14340578-4	chr2	14340511	14340711	+	974.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47787.0	NM_001012305	277468.0	Mm.44662	NM_001012305	ENSMUSG00000036949	Slc39a12	AW046938|Gm731	solute carrier family 39 (zinc transporter), member 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91931552-1	chr2	91931452	91931652	+	571.0	f1_c57bl6.idr	5' UTR (NM_001012335, exon 1 of 5)	5' UTR (NM_001012335, exon 1 of 5)	150.0	NM_001291481	17242.0	Mm.906	NM_010784	ENSMUSG00000027239	Mdk	MK|Mek	midkine	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135317430-2	chr4	135317330	135317530	+	594.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35784.0	NM_016799	51796.0	Mm.1963	NM_016799	ENSMUSG00000028809	Srrm1	AA407769|POP101|Srm160	serine/arginine repetitive matrix 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165361084-2	chr2	165360983	165361183	+	997.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001005425, intron 1 of 4)	MER20|DNA|hAT-Charlie	1036.0	NM_001005425	381405.0	Mm.296323	NM_001005425	ENSMUSG00000056824	Zfp663	Gm1008	zinc finger protein 663	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26505605-4	chr17	26505542	26505742	+	974.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_013642)	TTS (NM_013642)	2830.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10033256-2	chr19	10033156	10033356	+	645.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153790, intron 8 of 10)	intron (NR_153790, intron 8 of 10)	-8292.0	NM_021890	60527.0	Mm.253875	NM_021890	ENSMUSG00000024664	Fads3	AI464531	fatty acid desaturase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99224535-3	chr15	99224402	99224602	+	848.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010601)	promoter-TSS (NM_010601)	-474.0	NM_010601	16512.0	Mm.374793	NM_010601	ENSMUSG00000037579	Kcnh3	AU019351|C030044P22Rik|Elk2|Kv12.2|Melk2	potassium voltage-gated channel, subfamily H (eag-related), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-5101476-4	chr7	5101410	5101610	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15401.0	NM_001145013	192658.0	Mm.28764	NM_138954	ENSMUSG00000035191	Rfpl4	D7Ertd486e|Rfpl4a	ret finger protein-like 4	protein-coding	4.42758176267667	5.4671290216506	5.6142866104553	4.9058520392084	5.10039020739779	4.87476128018799	5.91921232593432	5.07288072653636	0.15528179396019	0.667202842680244	0.992612068328693
Merged-chr2-5811168-1	chr2	5811068	5811268	+	608.0	f0_balb.idr	intron (NM_133837, intron 6 of 12)	intron (NM_133837, intron 6 of 12)	-33866.0	NM_016918	53893.0	Mm.251904	NM_016918	ENSMUSG00000025817	Nudt5	-	nudix (nucleoside diphosphate linked moiety X)-type motif 5	protein-coding	-1.02399571608706	-1.00526265269726	-1.01704094937231	-1.020509632451	-0.749011178236936	-0.508513708853148	-1.01437460117799	-1.02014231438484	2.8633379022308	0.356921943934824	1
Merged-chr19-46154337-2	chr19	46154237	46154437	+	632.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178930, intron 1 of 39)	ID_B1|SINE|B4	1779.0	NM_178930	107338.0	Mm.271620	NM_178930	ENSMUSG00000025224	Gbf1	1700083E03Rik|AI035702|AW049900|mKIAA0248	golgi-specific brefeldin A-resistance factor 1	protein-coding	0.956244959444929	0.013398193181153	0.00566106475797296	-0.000375162957953035	0.972814852667944	0.0151292145545099	0.00737580194872606	0.000683669953711025	0.0420561319514604	0.985393473989274	1
Merged-chr14-22814850-1	chr14	22814750	22814950	+	827.0	f0_balb.idr	intron (NM_028275, intron 5 of 6)	intron (NM_028275, intron 5 of 6)	-272052.0	NR_046307	74896.0	Mm.444661	NR_046307	ENSMUSG00000114412	4930405A10Rik	4930456G20Rik	RIKEN cDNA 4930405A10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-22003949-2	chr9	22003849	22004049	+	705.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001293650, intron 3 of 17)	intron (NM_001293650, intron 3 of 17)	961.0	NM_001293650	19089.0	Mm.214593	NM_008925	ENSMUSG00000003402	Prkcsh	80K-H|PKCSH	protein kinase C substrate 80K-H	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-151688734-2	chr1	151688634	151688834	+	744.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_022018, intron 5 of 13)	intron (NM_022018, intron 5 of 13)	65993.0	NR_151474	102640772.0		NR_151473	ENSMUSG00000100594	2810414N06Rik	-	RIKEN cDNA 2810414N06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-91673174-4	chr15	91673082	91673282	+	993.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025730)	promoter-TSS (NM_025730)	-42.0	NM_025730	66725.0	Mm.37558	NM_025730	ENSMUSG00000036273	Lrrk2	4921513O20Rik|9330188B09Rik|AW561911|D630001M17Rik|Gm927|cI-46	leucine-rich repeat kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-122922298-4	chr7	122922197	122922397	+	991.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11B|LTR|ERVK	48162.0	NR_045614	73951.0	Mm.389936	NR_045614		4930413G21Rik	-	RIKEN cDNA 4930413G21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140418787-4	chr5	140418676	140418876	+	979.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133916)	promoter-TSS (NM_133916)	-529.0	NM_133916	27979.0	Mm.21671	NM_133916	ENSMUSG00000056076	Eif3b	AL033316|AL033334|AL033369|AW208965|D5Wsu45e|EIF3-ETA|EIF3-P110|EIF3-P116|Eif3s9|PRT1	eukaryotic translation initiation factor 3, subunit B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-58472542-4	chr15	58472440	58472640	+	930.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57072.0	NM_145959	210998.0	Mm.3224	NM_145959	ENSMUSG00000037119	Fam91a1	AV220772|BC033609|D15Ertd621e|SKIN|mKIAA0493	family with sequence similarity 91, member A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45704349-2	chr7	45704249	45704449	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016974)	promoter-TSS (NM_016974)	-898.0	NM_016974	13170.0	Mm.24222	NM_016974	ENSMUSG00000059824	Dbp	-	D site albumin promoter binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91453843-2	chr16	91453743	91453943	+	668.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11261.0	NR_077219	100503120.0	Mm.387130	NR_077219	ENSMUSG00000084866	A930006K02Rik	-	RIKEN cDNA A930006K02 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-22808417-3	chr14	22808294	22808494	+	858.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028275, intron 5 of 6)	intron (NM_028275, intron 5 of 6)	-265596.0	NR_046307	74896.0	Mm.444661	NR_046307	ENSMUSG00000114412	4930405A10Rik	4930456G20Rik	RIKEN cDNA 4930405A10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125035917-2	chr6	125035817	125036017	+	739.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252083, intron 10 of 10)	intron (NM_001252083, intron 10 of 10)	-3931.0	NM_133345	28019.0	Mm.262547	NM_133345	ENSMUSG00000030330	Ing4	D6Wsu147e|D6Xrf92|p29ING4	inhibitor of growth family, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3537897-4	chr19	3537798	3537998	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164159, intron 1 of 21)	intron (NM_001164159, intron 1 of 21)	37851.0	NM_001360430	52036.0	Mm.284686	NM_028999	ENSMUSG00000024908	Ppp6r3	4930528G08Rik|9130026N02Rik|D19Bwg1430e|D19Ertd703e|Pp6r3|Ppcs3|Pptcs3|Sapl|Saps3|mKIAA1558	protein phosphatase 6, regulatory subunit 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-154142364-4	chr4	154142257	154142457	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021499)	promoter-TSS (NM_021499)	-15.0	NM_021499	59002.0	Mm.46508	NM_021499	ENSMUSG00000029029	Wrap73	2610044M17Rik|5330425N03Rik|Dd57|Wdr8	WD repeat containing, antisense to Trp73	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-30702387-4	chr13	30702277	30702477	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134068, intron 4 of 7)	intron (NM_134068, intron 4 of 7)	42318.0	NM_134068	105352.0	Mm.289646	NM_134068	ENSMUSG00000069255	Dusp22	JKAP|JSP1|LMW-DSP2|MKPX	dual specificity phosphatase 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-12780488-7	chr7	12780356	12780556	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4798.0	NM_001017955	232875.0	Mm.333573	NM_001017955	ENSMUSG00000070822	Zscan18	EG232875	zinc finger and SCAN domain containing 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-82942943-4	chr18	82942854	82943054	+	894.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177464, intron 1 of 5)	intron (NM_001177464, intron 1 of 5)	-22394.0	NR_033307	75853.0	Mm.420737	NR_033307		4930592I03Rik	-	RIKEN cDNA 4930592I03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-11474004-3	chr8	11473891	11474091	+	666.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011227, intron 1 of 1)	intron (NM_011227, intron 1 of 1)	-3938.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120179185-4	chr8	120179068	120179268	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1699.0	NM_001033980	436062.0	Mm.334852	NM_001033980	ENSMUSG00000042269	Fam92b	1700120B06Rik	family with sequence similarity 92, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-73039466-4	chr2	73039342	73039542	+	991.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58996.0	NM_001018042	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117146299-4	chr11	117146197	117146397	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166507, intron 7 of 16)	intron (NM_001166507, intron 7 of 16)	31125.0	NM_001166506	74136.0	Mm.272312	NM_028777	ENSMUSG00000020823	Sec14l1	1200017E04Rik|2810012L19Rik|Naa-35	SEC14-like lipid binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-91585457-4	chr12	91585354	91585554	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175335, intron 2 of 8)	intron (NM_175335, intron 2 of 8)	4195.0	NM_031391	83602.0	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97405200-2	chr11	97405100	97405300	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42649.0	NM_138657	192157.0	Mm.34339	NM_138657	ENSMUSG00000038485	Socs7	2310063P06Rik|C85125|Nap4	suppressor of cytokine signaling 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-18959593-4	chr7	18959473	18959673	+	678.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001029877, exon 4 of 4)	3' UTR (NM_001029877, exon 4 of 4)	-27951.0	NM_194064	378430.0	Mm.277153	NM_194064	ENSMUSG00000051965	Nanos2	nos2	nanos C2HC-type zinc finger 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-25288049-4	chr15	25287940	25288140	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	125724.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45462876-3	chr7	45462779	45462979	+	785.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_007527, intron 5 of 5)	URR1A|DNA|hAT-Charlie	-2993.0	NM_010240	14325.0	Mm.30357	NM_010240	ENSMUSG00000050708	Ftl1	Ftl|Ftl-1|L-ferritin	ferritin light polypeptide 1	protein-coding	1.73608249396807	1.44364138790899	2.66795641422435	2.68144600924025	2.48026224950191	2.78152499528055	2.68889930514967	2.28521295978404	0.673480159329336	0.442155857624398	0.911405219295188
Merged-chr2-31062391-4	chr2	31062268	31062468	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355105, intron 6 of 15)	intron (NM_001355105, intron 6 of 15)	34132.0	NM_001177650	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-19576610-4	chr4	19576544	19576744	+	964.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025476, intron 1 of 9)	intron (NM_025476, intron 1 of 9)	1578.0	NM_025476	66302.0	Mm.440686	NM_025476	ENSMUSG00000028229	Rmdn1	Fam82b|RMD-1	regulator of microtubule dynamics 1	protein-coding	2.6914089846978	3.52418321097879	2.72241092296011	1.364398234542	2.88630127079543	2.58031820120953	3.72114309947047	1.37211388107093	0.194517243717735	0.833318239244808	0.998431161219273
Merged-chr8-124844681-1	chr8	124844581	124844781	+	549.5	f0_balb.idr	intron (NM_025615, intron 2 of 6)	intron (NM_025615, intron 2 of 6)	18348.0	NM_025615	66523.0	Mm.436864	NM_025615	ENSMUSG00000031984	2810004N23Rik	3110004G14Rik|Ayu21-55|Gt(pU21)55Imeg|GtAyu21-55	RIKEN cDNA 2810004N23 gene	protein-coding	1.24914802150617	0.960655920345078	0.726122607537045	0.716182270300109	1.75118179245794	0.967157659318721	1.11080718944641	1.54281342808626	1.95592675867993	0.169652931816737	0.636755748468364
Merged-chr17-43140139-4	chr17	43140028	43140228	+	758.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18163.0	NR_045155	545207.0	Mm.329050	NR_045153		E130008D07Rik	-	RIKEN cDNA E130008D07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-24697798-1	chr12	24697698	24697898	+	824.5	f0_balb.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-10456.0	NM_009104	20135.0	Mm.99	NM_009104	ENSMUSG00000020649	Rrm2	AA407299|R2	ribonucleotide reductase M2	protein-coding	1.46564704770802	0.947100940664188	1.46610657664266	1.6585699947061	1.91154434659531	1.18154695202434	0.934865296557968	1.76799870697455	0.383017138288763	0.764646969151891	0.998431161219273
Merged-chr12-110711092-3	chr12	110711000	110711200	+	752.399963	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-14705.0	NM_010480	15519.0	Mm.1843	NM_010480	ENSMUSG00000021270	Hsp90aa1	86kDa|89kDa|AL024080|AL024147|Hsp86-1|Hsp89|Hsp90|Hspca|hsp4	heat shock protein 90, alpha (cytosolic), class A member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-21272185-4	chr19	21272068	21272268	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009551)	promoter-TSS (NM_009551)	-110.0	NM_009551	22682.0	Mm.292405	NM_009551	ENSMUSG00000024750	Zfand5	2310057A04Rik|5830475F03Rik|AA415485|Za20d2|Zfp216	zinc finger, AN1-type domain 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-81347132-2	chr7	81347032	81347232	+	903.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007755, exon 12 of 12)	3' UTR (NM_007755, exon 12 of 12)	-1898.0	NM_009092	20068.0	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-88869539-2	chr4	88869439	88869639	+	666.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	10662.0	NM_177348	230405.0	Mm.246593	NM_177348	ENSMUSG00000045364	Ifne	Ifn-tau-1|Ifne1|Ifnt1|Infe1	interferon epsilon	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-87379096-4	chr17	87378992	87379192	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028639, intron 19 of 19)	intron (NM_028639, intron 19 of 19)	48649.0	NM_029298	75467.0	Mm.50108	NM_029298	ENSMUSG00000036557	Stpg4	1700011E24Rik|GSE	sperm tail PG rich repeat containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111438083-1	chr12	111437983	111438183	+	1000.0	f0_c57.idr	Intergenic	Intergenic	-4578.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89089292-2	chr3	89089192	89089392	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001083808, exon 4 of 9)	exon (NM_001083808, exon 4 of 9)	739.0	NM_001083808	72296.0	Mm.27687	NM_028188	ENSMUSG00000041263	Rusc1	2210403N08Rik|AA408288|NESCA	RUN and SH3 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-66123637-4	chr17	66123572	66123772	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001348292, exon 1 of 27)	5' UTR (NM_001348292, exon 1 of 27)	152.0	NM_001348292	320209.0	Mm.259605	NM_001003919	ENSMUSG00000035842	Ddx11	4732462I11Rik|CHL1|CHLR1|KRG2|essa15a	DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-4206657-2	chr12	4206557	4206757	+	879.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159537, intron 14 of 21)	intron (NM_001159537, intron 14 of 21)	27308.0	NM_134046	52504.0	Mm.70546	NM_134046	ENSMUSG00000020652	Cenpo	2810429O05Rik|8430427C03Rik|D12Ertd482e	centromere protein O	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-19942822-2	chr4	19942722	19942922	+	950.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20256.0	NM_175406	242341.0	Mm.19298	NM_175406	ENSMUSG00000028238	Atp6v0d2	1620401A02Rik|AI324824|V-ATPase	ATPase, H+ transporting, lysosomal V0 subunit D2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117088640-4	chr11	117088532	117088732	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	11284.0	NR_105853	102465258.0		NR_105853	ENSMUSG00000104740	Mir6516	mmu-mir-6516	microRNA 6516	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-58401226-2	chr15	58401142	58401342	+	706.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11968.0	NM_027211	69787.0	Mm.237985	NM_027211		Anxa13	1810034H17Rik|AV055219	annexin A13	protein-coding	-0.149053644530478	0.620354221385843	0.45761686801059	-0.141895294570079	-0.147986495747715	0.0767419727694957	-0.136374664261887	-0.141144058961983	-3.03707699690168	0.188716155170279	1
Merged-chr1-191073239-4	chr1	191073132	191073332	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198654, intron 4 of 5)	intron (NM_198654, intron 4 of 5)	10211.0	NM_198654	381318.0	Mm.32504	NM_198654	ENSMUSG00000062510	Nsl1	4833432M17Rik|AI451597|Gm105|Gm984	NSL1, MIS12 kinetochore complex component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-124710002-4	chr4	124709908	124710108	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4853.0	NM_029157	75062.0	Mm.25779	NM_029157	ENSMUSG00000028902	Sf3a3	4930512K19Rik|60kDa	splicing factor 3a, subunit 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-75339094-2	chr10	75338994	75339194	+	662.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12961.0	NR_033602	544707.0	Mm.349862	NR_033602	ENSMUSG00000112471	Gm5779	EG544707	ribosomal protein, large, P0 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-104469465-4	chr11	104469381	104469581	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359634)	promoter-TSS (NM_001359634)	-620.0	NM_001359634	76719.0	Mm.136418	NM_001081045	ENSMUSG00000018412	Kansl1	1700081L11Rik|9430041J06Rik|mKIAA1267	KAT8 regulatory NSL complex subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-58999811-4	chr13	58999720	58999920	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025074, intron 13 of 17)	intron (NM_001025074, intron 13 of 17)	192123.0	NM_001025074	18212.0	Mm.130054	NM_008745	ENSMUSG00000055254	Ntrk2	GP145-TrkB/GP95-TrkB|Tkrb|trk-B|trkB	neurotrophic tyrosine kinase, receptor, type 2	protein-coding	4.71926313090115	4.17658009686592	4.10702034134296	4.38978997977586	4.34815948500549	5.02940262339715	4.13847360407547	4.41080586430889	0.179237337617838	0.656183507667561	0.988505467120973
Merged-chr3-36536184-2	chr3	36536084	36536284	+	647.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14739.0	NR_040411	100503068.0	Mm.389423	NR_040411	ENSMUSG00000085007	Gm11549	-	predicted gene 11549	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-32489969-4	chr12	32489884	32490084	+	936.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	111195.0	NM_001162903	72123.0	Mm.341352	NM_028111	ENSMUSG00000090946	Ccdc71l	2010109K11Rik|AV375874	coiled-coil domain containing 71 like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-183369035-2	chr1	183368944	183369144	+	796.0	f0_balb.idr|f1_balb.idr	intron (NM_177389, intron 1 of 26)	CpG	521.0	NM_177389	338366.0	Mm.41152	NM_177389		Mia3	9130229H14Rik|A930039G15Rik|AU022327|B230399H06Rik|C80126|Gm1525|TANGO1|Tango	melanoma inhibitory activity 3	protein-coding	1.92509784145531	1.58395287327429	2.39700600191872	1.65275489651154	1.4204684658124	2.74673471424783	1.07363538081999	1.29350930945831	-0.2087918426591	0.851073107700784	0.998431161219273
Merged-chr3-65392654-4	chr3	65392551	65392751	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026155)	promoter-TSS (NM_026155)	-98.0	NM_026155	67437.0	Mm.232728	NM_026155	ENSMUSG00000027828	Ssr3	0610038P07Rik|AL022999|AU022074|AW553833|TRAPG	signal sequence receptor, gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124032312-4	chr5	124032183	124032383	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177876)	promoter-TSS (NM_177876)	-23.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-68782771-4	chr2	68782563	68782763	+	893.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-78778.0	NM_172856	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-82344891-1	chr15	82344791	82344991	+	638.0	f1_balb.idr	3' UTR (NM_177391, exon 2 of 2)	3' UTR (NM_177391, exon 2 of 2)	-1155.0	NM_026914	69029.0	Mm.260042	NM_026914	ENSMUSG00000022452	Smdt1	1500032L24Rik|Emre	single-pass membrane protein with aspartate rich tail 1	protein-coding	1.06557691451427	0.935984843788435	1.59977560847684	2.01911460388026	1.58506216240915	1.53317326124267	0.92310836159193	1.67308771310965	-0.104384390462384	0.935308769813373	0.998431161219273
Merged-chr10-4388652-3	chr10	4388549	4388749	+	981.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033466)	promoter-TSS (NM_001033466)	-541.0	NM_001033466	381990.0	Mm.262466	NM_001033466	ENSMUSG00000075327	Zbtb2	Gm1103	zinc finger and BTB domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-53128671-4	chr19	53128556	53128756	+	908.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11787.0	NM_001164099	27360.0	Mm.426080	NM_013758	ENSMUSG00000025026	Add3	AI463285|R75380	adducin 3 (gamma)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-9201486-2	chr3	9201386	9201586	+	727.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49081.0	NM_177660	229055.0	Mm.103262	NM_177660	ENSMUSG00000069114	Zbtb10	4832414A18|AU021107|RINZF	zinc finger and BTB domain containing 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-145925617-3	chr3	145925486	145925686	+	847.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009740, intron 1 of 2)	intron (NM_009740, intron 1 of 2)	1324.0	NM_009740	12042.0	Mm.239141	NM_009740	ENSMUSG00000028191	Bcl10	AI132454|BCL-10|C81403|CARMEN|CIPER|CLAP|ME10|cE10	B cell leukemia/lymphoma 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-16523890-2	chr16	16523790	16523990	+	788.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301817, intron 1 of 16)	MER21C|LTR|ERVL	3521.0	NM_001301818	224014.0	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-38341983-2	chr6	38341883	38342083	+	571.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028864, intron 1 of 8)	intron (NM_028864, intron 1 of 8)	12620.0	NM_001347122	78781.0	Mm.25243	NM_028421	ENSMUSG00000029826	Zc3hav1	1200014N16Rik|2900058M19Rik|9130009D18Rik|9830115L13Rik|ARTD13|D6Bwg1452e|ZAP	zinc finger CCCH type, antiviral 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-24384825-2	chr15	24384725	24384925	+	665.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A3|LTR|ERVL-MaLR	1028939.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-96330411-2	chr10	96330311	96330511	+	595.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	104204.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-109685753-7	chr13	109685612	109685812	+	923.404785	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011056, intron 3 of 16)	intron (NM_011056, intron 3 of 16)	-218097.0	NR_035442	100316683.0		NR_035442	ENSMUSG00000084651	Mir1904	Mirn1904|mmu-mir-1904	microRNA 1904	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-112673779-4	chr12	112673683	112673883	+	993.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001331107, intron 1 of 13)	CpG	493.0	NM_001165894	11651.0	Mm.6645	NM_009652	ENSMUSG00000001729	Akt1	Akt|LTR-akt|PKB|PKB/Akt|PKBalpha|Rac	thymoma viral proto-oncogene 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-37543648-3	chr19	37543508	37543708	+	581.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-6810.0	NM_175353	107371.0	Mm.24865	NM_175353	ENSMUSG00000053799	Exoc6	4833405E05Rik|AW413330|C430002C19|Sec15|Sec15l1|hbd|msec15	exocyst complex component 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-54853235-4	chr18	54853132	54853332	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	136948.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-103880803-2	chr14	103880703	103880903	+	592.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	-36327.0	NM_001136061	13618.0	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-110333965-2	chr9	110333865	110334065	+	719.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001144, intron 1 of 22)	intron (NM_001001144, intron 1 of 22)	609.0	NM_001001144	235623.0	Mm.288741	NM_001001144	ENSMUSG00000032485	Scap	9530044G19|mKIAA0199	SREBF chaperone	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166581893-2	chr2	166581793	166581993	+	670.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 27 of 39)	intron (NM_177782, intron 27 of 39)	17371.0	NR_152154	433503.0	Mm.491336	NR_152154		Gm29679	-	predicted gene, 29679	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28006854-1	chr17	28006754	28006954	+	776.0	f1_c57bl6.idr	intron (NM_181413, intron 11 of 24)	intron (NM_181413, intron 11 of 24)	73730.0	NM_001357681	21463.0	Mm.29758	NM_013687	ENSMUSG00000062859	Tcp11	D17Ken1|Tcp-11	t-complex protein 11	protein-coding	0.103777966949693	1.02027576571481	0.119623248696175	0.113704608692753	0.534150222807179	0.813165677748602	0.121307142600207	0.114741797667085	0.0602329805858619	0.97712937551406	1
Merged-chr2-24950326-4	chr2	24950220	24950420	+	874.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_147179, exon 1 of 6)	5' UTR (NM_147179, exon 1 of 6)	162.0	NM_147179	67187.0	Mm.296106	NM_026021	ENSMUSG00000026974	Zmynd19	2700064H14Rik|AA536891|AU014915|mizip	zinc finger, MYND domain containing 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-31191184-4	chr6	31191084	31191284	+	898.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110470, intron 1 of 2)	LTR33C|LTR|ERVL	27290.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-54246633-4	chr3	54246538	54246738	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253682, intron 3 of 11)	intron (NM_001253682, intron 3 of 11)	90581.0	NM_001253682	22066.0	Mm.10100	NM_016984	ENSMUSG00000027748	Trpc4	CCE1|STRPC4|Trp4|Trrp4	transient receptor potential cation channel, subfamily C, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141308830-4	chr7	141308709	141308909	+	968.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016874, intron 10 of 11)	intron (NM_016874, intron 10 of 11)	16803.0	NM_007878	13491.0	Mm.41075	NM_007878	ENSMUSG00000025496	Drd4	AW125663|D4R|Drd-4	dopamine receptor D4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-31613920-4	chr15	31613802	31614002	+	962.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356313, intron 5 of 5)	intron (NM_001356313, intron 5 of 5)	11786.0	NM_001356313	68073.0	Mm.119185	NM_026546	ENSMUSG00000039065	Fam173b	A930016P21Rik|AA987072	family with sequence similarity 173, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-87753737-4	chr10	87753651	87753851	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-104514.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	4.93878693149245	4.28326802071182	4.59558915564116	4.02462184715634	4.94563953846319	4.2435814270361	5.26455361224252	4.49678474320706	0.35691548599994	0.369120665587269	0.863136285888838
Merged-chr16-16554565-4	chr16	16554461	16554661	+	970.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301817, intron 1 of 16)	intron (NM_001301817, intron 1 of 16)	5658.0	NM_139232	224014.0	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-62046065-1	chr18	62045965	62046165	+	656.5	f0_balb.idr	Intergenic	L2a|LINE|L2	92990.0	NM_172628	225608.0	Mm.262320	NM_172628	ENSMUSG00000045629	Sh3tc2	D430044G18Rik	SH3 domain and tetratricopeptide repeats 2	protein-coding	3.74690620157165	3.56819970805483	3.27124068030839	3.76934377638109	3.55717484001802	2.59916328667396	3.55878044124042	3.28731271971258	-0.457041898069731	0.41049386195048	0.894256659801134
Merged-chr7-80325738-3	chr7	80325713	80325913	+	724.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_133952, exon 20 of 20)	exon (NM_133952, exon 20 of 20)	-1359.0	NM_173445	269955.0	Mm.474502	NM_173445	ENSMUSG00000038930	Rccd1	5830436H09|E430018M08Rik	RCC1 domain containing 1	protein-coding	-0.0338745214826508	-0.0175240436217778	0.544797408348344	-0.0270111015310523	0.34987040092676	-0.0163172215917322	-0.0216975250547655	0.609480587498135	0.819483178165775	0.71781972113851	1
Merged-chr4-141646807-3	chr4	141646686	141646886	+	884.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347237, intron 1 of 18)	intron (NM_001347237, intron 1 of 18)	17329.0	NM_001347237	69582.0	Mm.33220	NM_001033150	ENSMUSG00000028917	Plekhm2	2310034J19Rik|AI854247|mKIAA0842	pleckstrin homology domain containing, family M (with RUN domain) member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85220001-2	chr12	85219901	85220101	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145445, intron 2 of 7)	intron (NM_145445, intron 2 of 7)	520.0	NM_145445	217715.0	Mm.29041	NM_145445	ENSMUSG00000004788	Eif2b2	EIF-2Bbeta|EIF2B	eukaryotic translation initiation factor 2B, subunit 2 beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-88337985-2	chr10	88337885	88338085	+	648.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027878, intron 3 of 6)	intron (NM_027878, intron 3 of 6)	19090.0	NM_027878	71712.0	Mm.35450	NM_027878	ENSMUSG00000020057	Dram1	1200002N14Rik|Dram	DNA-damage regulated autophagy modulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-85394547-2	chr17	85394447	85394647	+	640.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028576, intron 5 of 10)	intron (NM_028576, intron 5 of 10)	223849.0	NR_038084	100043902.0	Mm.150838	NR_015385	ENSMUSG00000093460	Six3os1	D17Mgi26|E130112H22Rik|Rncr1|Six3os	SIX homeobox 3, opposite strand 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-121708786-2	chr11	121708686	121708886	+	607.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144797, intron 2 of 3)	intron (NM_144797, intron 2 of 3)	6359.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-29720944-3	chr11	29720903	29721103	+	856.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024226, intron 1 of 6)	intron (NM_024226, intron 1 of 6)	2440.0	NM_024226	68585.0	Mm.192580	NM_024226	ENSMUSG00000020458	Rtn4	1110020G17Rik|AA407876|AA409940|AA960376|ASY|C130026I10Rik|NOGO|NSP-CL|NgA|Nogo-A|Nogo-B|Nogo-C|mKIAA0886|mKIAA4153	reticulon 4	protein-coding	3.42172906300775	3.05350232731532	3.92506121288965	3.40013209591068	3.56350390099738	3.07667012068936	2.97115845656714	1.61222136440098	-0.810701602539278	0.237974207446207	0.734516406999068
Merged-chr18-62171657-2	chr18	62171553	62171753	+	623.5	f0_balb.idr|f1_balb.idr	Intergenic	RLTR17|LTR|ERVK	8328.0	NM_007420	11555.0	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-11119487-4	chr19	11119393	11119593	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027058, intron 1 of 6)	intron (NM_027058, intron 1 of 6)	11385.0	NM_027058	69369.0	Mm.391200	NM_027058	ENSMUSG00000024729	1700017D01Rik	-	RIKEN cDNA 1700017D01 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-23207885-4	chr8	23207807	23208007	+	990.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018743, intron 1 of 12)	CpG	546.0	NM_018743	102247.0	Mm.200898	NM_018743	ENSMUSG00000031545	Gpat4	AU041707|AW545732|Agpat6|Tsarg7	glycerol-3-phosphate acyltransferase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-16211887-1	chr18	16211787	16211987	+	552.0	f1_c57bl6.idr	Intergenic	Intergenic	-493841.0	NM_199055	71367.0	Mm.329304	NM_199055	ENSMUSG00000047161	Chst9	5430438D01Rik	carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-30177436-2	chr6	30177336	30177536	+	711.666687	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_038124, exon 1 of 1)	non-coding (NR_038124, exon 1 of 1)	813.0	NR_038124	100463519.0	Mm.361139	NR_038124		BB283400	BF465573|Rncr4	expressed sequence BB283400	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-57926571-3	chr15	57926476	57926676	+	848.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356310, intron 3 of 19)	intron (NM_001356310, intron 3 of 19)	14377.0	NM_001356310	210544.0	Mm.390835	NM_199300	ENSMUSG00000022364	Tbc1d31	4B3|D330013L20Rik|Gm85|Wdr67	TBC1 domain family, member 31	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166907897-2	chr2	166907797	166907997	+	780.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023565, intron 1 of 24)	intron (NM_023565, intron 1 of 24)	1801.0	NM_023565	110750.0	Mm.22417	NM_023565	ENSMUSG00000002718	Cse1l	2610100P18Rik|AA407533|Capts|Cas|Xpo2	chromosome segregation 1-like (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-44392699-3	chr11	44392606	44392806	+	893.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7357.0	NM_001303244	16160.0	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	2.9025585147157	2.25239442922804	2.68766459855494	3.31995884099774	3.01656225044642	3.63414853511651	4.13372860383728	2.98058110866206	1.11109860211643	0.0866421385338528	0.452495231338871
Merged-chr6-82822112-4	chr6	82821982	82822182	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47628.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-63097450-4	chr11	63097336	63097536	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31546.0	NM_001302258	18858.0	Mm.1237	NM_008885	ENSMUSG00000018217	Pmp22	22kDa|Gas-3|HNPP|TRE002|Tr|trembler	peripheral myelin protein 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-38940671-2	chr18	38940571	38940771	+	741.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033789, intron 4 of 4)	intron (NM_001033789, intron 4 of 4)	-21972.0	NM_010197	14164.0	Mm.241282	NM_010197	ENSMUSG00000036585	Fgf1	Dffrx|Fam|Fgf-1|Fgfa	fibroblast growth factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-37284966-4	chr19	37284873	37285073	+	917.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031156, intron 17 of 23)	intron (NM_031156, intron 17 of 23)	-20878.0	NR_040298	77059.0	Mm.251476	NR_040298		4931408D14Rik	-	RIKEN cDNA 4931408D14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-88807152-1	chr16	88807052	88807252	+	638.0	f1_c57bl6.idr	intron (NR_138570, intron 2 of 3)	L1Md_F2|LINE|L1	5068.0	NR_045150	433047.0	Mm.298027	NR_045150		Gm20741	-	keratin associated protein pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-97355347-4	chr7	97355257	97355457	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16260.0	NM_199035	381903.0	Mm.279683	NM_199035	ENSMUSG00000035704	Alg8	AI447372|Gm1089	asparagine-linked glycosylation 8 (alpha-1,3-glucosyltransferase)	protein-coding	3.91405244981609	3.53593316512014	1.75795093295459	3.31316262636775	4.16560265990997	4.5288387472795	3.61796965123611	3.79445329972061	1.04299442777667	0.0832245141733815	0.44173548907031
Merged-chr10-121961601-3	chr10	121961523	121961723	+	680.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081037, intron 1 of 21)	intron (NM_001081037, intron 1 of 21)	85692.0	NM_001242411	117600.0	Mm.288698	NM_001081037	ENSMUSG00000020121	Srgap1	4930572H05Rik|Arhgap13	SLIT-ROBO Rho GTPase activating protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167374634-2	chr2	167374534	167374734	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-25456.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153136433-2	chr2	153136339	153136539	+	832.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001172117, intron 8 of 12)	PB1D11|SINE|Alu	-24862.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-7556464-4	chr9	7556365	7556565	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1964.0	NM_008611	17394.0	Mm.16415	NM_008611	ENSMUSG00000005800	Mmp8	BB138268	matrix metallopeptidase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114867509-2	chr11	114867409	114867609	+	829.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110338, intron 3 of 3)	MER5A|DNA|hAT-Charlie	15479.0	NM_147217	70355.0	Mm.242413	NM_147217	ENSMUSG00000051043	Gprc5c	1110028I06Rik|3200002M13Rik|Raig3	G protein-coupled receptor, family C, group 5, member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-86655634-2	chr10	86655534	86655734	+	865.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29893.0	NR_015572	66263.0	Mm.392261	NR_015572	ENSMUSG00000097412	1810014B01Rik	-	RIKEN cDNA 1810014B01 gene	pseudo	0.554869938489284	0.217926955198858	0.750287554005363	0.362572996574232	0.563157196069517	0.559846806220565	0.213623087305686	0.208902628476896	-0.628765857684273	0.736979599304697	1
Merged-chr7-64035731-2	chr7	64035631	64035831	+	635.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-96816.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-87293326-4	chr17	87293214	87293414	+	913.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028639, intron 3 of 19)	intron (NM_028639, intron 3 of 19)	10428.0	NM_028639	225049.0	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5887029-3	chr17	5886925	5887125	+	950.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_025664, exon 2 of 18)	exon (NM_025664, exon 2 of 18)	45645.0	NM_025664	66616.0	Mm.89515	NM_025664	ENSMUSG00000002365	Snx9	2700073N08Rik|SDP1|SH3PX1	sorting nexin 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-116597170-4	chr12	116597079	116597279	+	945.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011215, intron 2 of 22)	MTE2a|LTR|ERVL-MaLR	111459.0	NM_011215	19276.0	Mm.206054	NM_011215	ENSMUSG00000056553	Ptprn2	4930425H11Rik|IA2beta|PTP-NP|Phol|mKIAA0387|phogrin	protein tyrosine phosphatase, receptor type, N polypeptide 2	protein-coding	5.82331664745721	6.73298071166666	6.46090144228589	5.92831269335899	4.08408073157175	4.3955333587943	4.44147076022137	4.03315212927842	-2.34256171197489	2.1955229799653e-13	8.87490391121873e-11
Merged-chr6-113629862-2	chr6	113629762	113629962	+	625.833313	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009507, exon 3 of 3)	3' UTR (NM_009507, exon 3 of 3)	5841.0	NM_009507	22346.0	Mm.29407	NM_009507	ENSMUSG00000033933	Vhl	Vhlh	von Hippel-Lindau tumor suppressor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84856978-4	chr8	84856881	84857081	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025648)	promoter-TSS (NM_025648)	-5.0	NR_152751	66590.0	Mm.292517	NM_025648	ENSMUSG00000003808	Farsa	0610012A19Rik|Farsla|pheRS	phenylalanyl-tRNA synthetase, alpha subunit	protein-coding	3.80897641439349	3.64862732718001	4.52141183657571	3.50958204720693	4.62848692325963	4.34112930389588	3.2297820644139	3.90344896799436	0.267928716562601	0.595369458934438	0.971139446851758
Merged-chr2-96871615-2	chr2	96871515	96871715	+	598.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289742, intron 3 of 7)	intron (NM_001289742, intron 3 of 7)	553446.0	NM_001289743	241568.0	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-34944914-4	chr2	34944837	34945037	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009421, intron 10 of 10)	intron (NM_009421, intron 10 of 10)	16835.0	NM_009421	22029.0	Mm.239514	NM_009421	ENSMUSG00000026875	Traf1	4732496E14Rik	TNF receptor-associated factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-57283991-4	chr17	57283906	57284106	+	950.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163816, intron 1 of 25)	intron (NM_001163816, intron 1 of 25)	4906.0	NM_001163815	22324.0	Mm.248172	NM_011691	ENSMUSG00000034116	Vav1	Vav|vav-T	vav 1 oncogene	protein-coding	2.2829435467437	1.83956870266184	2.90380201726689	2.82339732813581	3.05944028374829	2.27015144568166	3.09305552833373	2.53830479683736	0.505677931713938	0.512861036678284	0.945692630850315
Merged-chr11-103016405-5	chr11	103016255	103016455	+	709.200012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026551, intron 1 of 4)	intron (NM_026551, intron 1 of 4)	792.0	NM_026551	68087.0	Mm.277449	NM_026551	ENSMUSG00000020935	Dcakd	3010024O21Rik|6720485C15Rik|AI849483	dephospho-CoA kinase domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-87623884-4	chr1	87623806	87624006	+	990.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110192, intron 1 of 26)	intron (NM_001110192, intron 1 of 26)	3594.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128366732-2	chr10	128366632	128366832	+	598.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081040, intron 2 of 4)	intron (NM_001081040, intron 2 of 4)	3305.0	NM_001081040	210582.0	Mm.296876	NM_001081040	ENSMUSG00000039914	Coq10a	Gm1	coenzyme Q10A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19325986-4	chr7	19325875	19326075	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15930.0	NM_001347586	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-8607343-4	chr11	8607242	8607442	+	912.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 2 of 30)	intron (NM_001083587, intron 2 of 30)	57193.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100588694-2	chr11	100588594	100588794	+	979.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019795, intron 9 of 13)	PB1D10|SINE|Alu	12803.0	NM_001146318	12799.0	Mm.15711	NM_009923	ENSMUSG00000006782	Cnp	CNPase|Cnp-1|Cnp1	2',3'-cyclic nucleotide 3' phosphodiesterase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-55356113-2	chr4	55355972	55356172	+	783.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009011, intron 1 of 9)	ORR1D2|LTR|ERVL-MaLR	6030.0	NM_009011	19359.0	Mm.196846	NM_009011	ENSMUSG00000028426	Rad23b	0610007D13Rik|AV001138|HR23B|mHR23B|p58	RAD23 homolog B, nucleotide excision repair protein	protein-coding	0.806528356841166	0.865086646974226	1.99818593462142	1.52217797602186	1.75045292281312	1.12313868201346	2.01661169436562	0.834375409486953	0.361373623599656	0.795225287237429	0.998431161219273
Merged-chr10-110968798-2	chr10	110968698	110968898	+	612.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359624, intron 5 of 16)	intron (NM_001359624, intron 5 of 16)	41211.0	NM_001359622	320150.0	Mm.339281	NM_172554	ENSMUSG00000035798	Zdhhc17	A230053P19Rik|BB187739|D130071N24Rik|DHHC-17|Hip14	zinc finger, DHHC domain containing 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-156011032-1	chr2	156010932	156011132	+	783.0	f1_c57bl6.idr	intron (NM_001356413, intron 5 of 13)	intron (NM_001356413, intron 5 of 13)	3004.0	NM_001356413	66366.0	Mm.141276	NM_025516	ENSMUSG00000005881	Ergic3	2310015B14Rik|AV318804|CGI-54|D2Ucla1|NY-BR-84|Sdbcag84	ERGIC and golgi 3	protein-coding	-0.139636644963584	0.78867631743894	-0.125711566451126	-0.130911747276213	0.67705485847845	-0.117533682381471	-0.12423238998303	-0.130000345871917	-0.273933662616245	0.909354943667075	1
Merged-chr3-10290424-2	chr3	10290324	10290524	+	724.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029310, intron 1 of 5)	intron (NM_029310, intron 1 of 5)	10759.0	NM_001357159	75497.0	Mm.47052	NM_029310	ENSMUSG00000027530	Fabp12	1700008G05Rik	fatty acid binding protein 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-51814879-2	chr11	51814779	51814979	+	596.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_199299, exon 12 of 12)	3' UTR (NM_199299, exon 12 of 12)	42602.0	NM_199299	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-84460120-4	chr2	84460012	84460212	+	957.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355271, intron 2 of 8)	intron (NM_001355271, intron 2 of 8)	14062.0	NM_011576	21788.0	Mm.124316	NM_011576	ENSMUSG00000027082	Tfpi	A630013F22Rik|AW552122|EPI|LACI	tissue factor pathway inhibitor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-75834527-4	chr10	75834418	75834618	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010361, exon 1 of 5)	5' UTR (NM_010361, exon 1 of 5)	363.0	NM_010361	14872.0	Mm.24118	NM_010361	ENSMUSG00000033318	Gstt2	AI266894|Yrs|mGSTT2	glutathione S-transferase, theta 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171551655-3	chr1	171551578	171551778	+	678.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7515.0	NM_018729	18106.0	Mm.2299	NM_018729	ENSMUSG00000004709	Cd244	2B4|C9.1|F730046O15Rik|Ly90|NAIL|NKR2B4|Nmrk|SLAMF4	CD244 natural killer cell receptor 2B4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-136450519-3	chr4	136450423	136450623	+	953.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19238.0	NM_024452	269593.0	Mm.485824	NM_024452	ENSMUSG00000001089	Luzp1	2700072H04Rik|AI266952|Luzp|mFLJ00226	leucine zipper protein 1	protein-coding	2.40237453039473	2.58730621972379	1.42506156016549	1.38009277704783	3.42684048559232	3.58556099141718	2.8860961464182	3.64748820749492	2.53824422647928	0.00133093522164218	0.024567016598866
Merged-chr9-59487620-2	chr9	59487520	59487720	+	943.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1246.0	NM_019927	23806.0	Mm.305925	NM_019927	ENSMUSG00000025234	Arih1	AU021774|Ari|Ari1|Hari|Hhari|Ubch7bp|Uip77	ariadne RBR E3 ubiquitin protein ligase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-69185568-4	chr10	69185451	69185651	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23001.0	NM_001252636	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5779026-2	chr19	5778926	5779126	+	782.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11B|LTR|ERVK	-7607.0	NR_155264	78891.0	Mm.276063	NM_023912	ENSMUSG00000024941	Scyl1	2810011O19Rik|C85140|Ntkl|mdf|mfd|p105	SCY1-like 1 (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-14236296-4	chr2	14236196	14236396	+	914.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008625, intron 1 of 29)	(TTTTG)n|Simple_repeat|Simple_repeat	6882.0	NM_008625	17533.0	Mm.2019	NM_008625	ENSMUSG00000026712	Mrc1	AW259686|CD206|MR	mannose receptor, C type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-92316400-2	chr16	92316300	92316500	+	622.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3934.0	NR_045300	100503166.0	Mm.443304	NR_045300	ENSMUSG00000085637	1700048M11Rik	Gm15980	RIKEN cDNA 1700048M11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71297806-3	chr8	71297712	71297912	+	705.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142322, intron 2 of 39)	intron (NM_001142322, intron 2 of 39)	25098.0	NM_001142323	17925.0	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	1.88145035987108	1.42239962934018	2.03948815822954	3.04289860679051	2.47516179412977	2.28978866769578	2.58504824230996	2.92612135359825	0.688807739000754	0.439810908693448	0.909249686890578
Merged-chr15-89180121-3	chr15	89179988	89180188	+	883.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138749, intron 1 of 37)	intron (NM_138749, intron 1 of 37)	700.0	NM_001284506	140570.0	Mm.267514	NM_138749	ENSMUSG00000036606	Plxnb2	Debt|plexin-B2	plexin B2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166490561-2	chr2	166490461	166490661	+	614.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE-int|LTR|ERVL-MaLR	43110.0	NR_015558	319684.0	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-75236940-4	chr1	75236840	75237040	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001159885, exon 1 of 9)	exon (NM_001159885, exon 1 of 9)	238.0	NM_001159885	56812.0	Mm.489660	NM_020266	ENSMUSG00000026203	Dnajb2	2700059H22Rik|Dnajb10|Hsj1|mDj8	DnaJ heat shock protein family (Hsp40) member B2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-68756985-4	chr7	68756892	68757092	+	964.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-7754.0	NM_025549	66412.0	Mm.251199	NM_025549	ENSMUSG00000042659	Arrdc4	2410003C09Rik|AV216361	arrestin domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-21784575-2	chr12	21784475	21784675	+	743.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-367139.0	NM_011739	22630.0	Mm.289630	NM_011739	ENSMUSG00000076432	Ywhaq	2700028P07Rik|AA409740|AU021156|R74690	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56883871-4	chr17	56883771	56883971	+	987.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030141, intron 10 of 13)	intron (NM_030141, intron 10 of 13)	8238.0	NM_030141	78625.0	Mm.160106	NM_030141	ENSMUSG00000024209	1700061G19Rik	1700026H02|AI507598	RIKEN cDNA 1700061G19 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101649694-3	chr7	101649624	101649824	+	920.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14044.0	NM_009191	20480.0	Mm.3990	NM_009191	ENSMUSG00000001829	Clpb	AL118244|Skd3	ClpB caseinolytic peptidase B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83605715-4	chr11	83605610	83605810	+	889.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_036453, intron 2 of 8)	intron (NR_036453, intron 2 of 8)	-12623.0	NM_009139	20305.0	Mm.137	NM_009139	ENSMUSG00000018927	Ccl6	MRP-1|Scya6|c10	chemokine (C-C motif) ligand 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-57230110-2	chr16	57230010	57230210	+	568.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026254, intron 1 of 17)	intron (NM_026254, intron 1 of 17)	1356.0	NM_026254	67581.0	Mm.257819	NM_026254	ENSMUSG00000022749	Tbc1d23	4930451A13Rik|AU015720|AU043671|AU043778|D030022P07Rik|W51689	TBC1 domain family, member 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-72797395-2	chr5	72797295	72797495	+	583.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013689, intron 3 of 17)	MTEa|LTR|ERVL-MaLR	-44618.0	NM_001122754	22165.0	Mm.3264	NM_013698	ENSMUSG00000054892	Txk	A130089B16Rik|Btkl|PTK-RL-18|PTK4|Rlk	TXK tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-88285920-2	chr1	88285820	88286020	+	616.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8341.0	NM_198652	381280.0	Mm.384762	NM_198652	ENSMUSG00000044783	Hjurp	6430706D22Rik|A730008H23Rik|C330011F01Rik|Gm975|Mfleg1	Holliday junction recognition protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-28940590-2	chr19	28940490	28940690	+	770.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198651, intron 8 of 12)	intron (NM_198651, intron 8 of 12)	-23330.0	NM_028922	74411.0	Mm.441887	NM_028922	ENSMUSG00000040105	Plpp6	4932443D16Rik|Ppapdc2	phospholipid phosphatase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84701753-4	chr8	84701649	84701849	+	936.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_008535, exon 1 of 4)	5' UTR (NM_008535, exon 1 of 4)	292.0	NM_008535	17095.0	Mm.4925	NM_008535	ENSMUSG00000034041	Lyl1	Lyl-1|bHLHa18	lymphoblastomic leukemia 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-102976405-4	chr2	102976301	102976501	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-74736.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-46740959-3	chr18	46740851	46741051	+	809.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001303015)	promoter-TSS (NM_001303015)	628.0	NM_026217	67526.0	Mm.9852	NM_026217	ENSMUSG00000032905	Atg12	4931423H11Rik|A330058M13Rik|Apg12l|Atg12l	autophagy related 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-9392005-2	chr13	9391905	9392105	+	610.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081426, intron 1 of 36)	intron (NM_001081426, intron 1 of 36)	115480.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46485412-2	chr19	46485312	46485512	+	929.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025391, intron 11 of 11)	intron (NM_001025391, intron 11 of 11)	-16236.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-119968242-7	chr4	119968104	119968304	+	915.9428710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010657, intron 1 of 8)	intron (NM_010657, intron 1 of 8)	153526.0	NM_010657	16656.0	Mm.302758	NM_010657	ENSMUSG00000028634	Hivep3	2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3	human immunodeficiency virus type I enhancer binding protein 3	protein-coding	0.831879269688771	0.376166960016299	0.941202582812798	0.363469595532875	0.842325706305783	0.377780142105644	0.952574903176055	0.364436949309623	0.041305642444789	0.982260836052292	1
Merged-chr2-155930137-4	chr2	155930052	155930252	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_018888, exon 1 of 10)	5' UTR (NM_018888, exon 1 of 10)	158.0	NM_001355443	56046.0	Mm.158827	NM_018888	ENSMUSG00000005882	Uqcc1	2310079L17Rik|2410003P15Rik|3110038N19Rik|Bfzb|Bfzp|Cbp3|Uqcc	ubiquinol-cytochrome c reductase complex assembly factor 1	protein-coding	4.10638536717471	3.47627074708689	4.56530993577076	3.98495967015651	4.13853969709959	3.2536586335165	4.59729645144668	4.63245611861047	0.228411303783118	0.633546834891737	0.982417279970648
Merged-chr7-114317569-4	chr7	114317468	114317668	+	998.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_029437, intron 3 of 3)	intron (NR_029437, intron 3 of 3)	-41452.0	NM_011965	26440.0	Mm.121265	NM_011965	ENSMUSG00000030751	Psma1	C2|HC2|Pros-30|alpha-type	proteasome (prosome, macropain) subunit, alpha type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-82802486-4	chr7	82802391	82802591	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46847.0	NR_046004	77800.0	Mm.444811	NR_046004	ENSMUSG00000086690	4933406J10Rik	A930009F24Rik	RIKEN cDNA 4933406J10 gene	ncRNA	6.00544306569556	5.89024944738172	5.90846561643302	5.79491444419508	5.48179238505966	5.24490688712217	5.90238514810687	4.9026192120111	-0.530895751703122	0.0529014069610137	0.336676348240522
Merged-chr6-88901675-3	chr6	88901553	88901753	+	996.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011906)	promoter-TSS (NM_011906)	-598.0	NM_011906	24100.0	Mm.284480	NM_011906	ENSMUSG00000002871	Tpra1	40kDa|Gpr175|Tpra40	transmembrane protein, adipocyte asscociated 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-83608112-4	chr8	83608019	83608219	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018808)	promoter-TSS (NM_018808)	-56.0	NM_018808	81489.0	Mm.282092	NM_018808	ENSMUSG00000005483	Dnajb1	0610007I11Rik|DjB1|HSPF1|Hdj1|Hsp40	DnaJ heat shock protein family (Hsp40) member B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-67060350-4	chr13	67060256	67060456	+	796.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166218, intron 1 of 3)	Lx8|LINE|L1	814.0	NM_001166218	78251.0	Mm.297247	NM_001166218	ENSMUSG00000090641	Zfp712	4921504N20Rik|mszf31|mszf89	zinc finger protein 712	protein-coding	1.63513066396052	2.37799269366181	2.18423674296238	2.87424212183382	1.78735046830858	1.17247162265729	1.14332907352554	1.88375185011491	-2.10259239435875	0.0475682429935029	0.316372639286098
Merged-chr8-70234487-4	chr8	70234300	70234500	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133972)	promoter-TSS (NM_133972)	22.0	NM_133972	76813.0	Mm.383251	NM_133972	ENSMUSG00000002343	Armc6	2410153K17Rik|AW554412	armadillo repeat containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-4183975-1	chr11	4183875	4184075	+	545.0	f1_c57bl6.idr	Intergenic	Intergenic	-2858.0	NM_134023	103724.0	Mm.28140	NM_134023	ENSMUSG00000034412	Tbc1d10a	AI447804|EPI64|Tbc1d10|mFLJ00288	TBC1 domain family, member 10a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-21943187-2	chr3	21943087	21943287	+	809.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-133465.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47473819-2	chr17	47473719	47473919	+	766.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28472.0	NM_001356290	63856.0	Mm.275901	NM_022015	ENSMUSG00000023980	Taf8	AW260255|Tbn	TATA-box binding protein associated factor 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-17724304-6	chr10	17724219	17724419	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010828, exon 2 of 2)	exon (NM_010828, exon 2 of 2)	1091.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35146930-1	chr17	35146830	35147030	+	1000.0	f1_c57bl6.idr	intron (NM_057171, intron 24 of 24)	intron (NM_057171, intron 24 of 24)	11216.0	NM_001252469	224727.0	Mm.203962	NM_057171	ENSMUSG00000024392	Bag6	2410045D21Rik|AA408914|BAG-6|Bat3|D17H6S52E|G3|Scythe	BCL2-associated athanogene 6	protein-coding	-0.0494319347870747	-0.0322354803948153	-0.0378562889435833	0.601360003258161	0.231591675881253	-0.0309700886468196	0.658932256347776	-0.0414417091135261	0.558662868973669	0.804644096723968	1
Merged-chr2-167786079-4	chr2	167785996	167786196	+	987.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	94919.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-145889431-4	chr2	145889299	145889499	+	948.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13842.0	NM_026425	67877.0	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	3.21214661626403	2.2987636690528	1.81579678251755	3.18930373073716	3.11955002256773	2.31570640874296	2.88901097486292	2.8005756390391	0.0767141857864925	0.92041150591439	0.998431161219273
Merged-chr15-57912141-4	chr15	57912036	57912236	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001167679)	promoter-TSS (NM_001167679)	-63.0	NM_001081396	210544.0	Mm.390835	NM_199300	ENSMUSG00000022364	Tbc1d31	4B3|D330013L20Rik|Gm85|Wdr67	TBC1 domain family, member 31	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-138153216-1	chr6	138153116	138153316	+	696.0	f0_balb.idr	intron (NR_154598, intron 2 of 2)	intron (NR_154598, intron 2 of 2)	11629.0	NM_001361309	56615.0	Mm.14796	NM_019946	ENSMUSG00000008540	Mgst1	1500002K10Rik|Gst	microsomal glutathione S-transferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118173204-4	chr11	118173101	118173301	+	945.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001112700, intron 10 of 12)	intron (NM_001112700, intron 10 of 12)	39541.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-12992443-2	chr7	12992343	12992543	+	740.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009512, intron 4 of 9)	MIR|SINE|MIR	5749.0	NM_009512	26459.0	Mm.10984	NM_009512	ENSMUSG00000030382	Slc27a5	FACVL3|FATP5|VLCS-H2|VLCSH2|Vlacsr	solute carrier family 27 (fatty acid transporter), member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-67217314-3	chr7	67217215	67217415	+	789.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131044, intron 2 of 2)	intron (NR_131044, intron 2 of 2)	5143.0	NR_131044	76628.0	Mm.384589	NR_131043	ENSMUSG00000097527	1700112J16Rik	-	RIKEN cDNA 1700112J16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-147848362-3	chr5	147848306	147848506	+	581.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12222.0	NM_025624	66537.0	Mm.332855	NM_025624	ENSMUSG00000029649	Pomp	2510048O06Rik|Ump1	proteasome maturation protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-39226725-4	chr6	39226654	39226854	+	948.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19981.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-26663784-2	chr2	26663684	26663884	+	999.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7498.0	NM_010695	16821.0	Mm.123925	NM_010695	ENSMUSG00000026919	Lcn4	A630045M08Rik|Vnsp2	lipocalin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45621680-4	chr7	45621530	45621730	+	728.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001018013)	promoter-TSS (NM_001018013)	-181.0	NM_001018013	73456.0	Mm.380445	NM_001018013	ENSMUSG00000064158	Izumo1	1700058F15Rik|Izumo	izumo sperm-egg fusion 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-121594774-2	chr5	121594674	121594874	+	647.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001308450)	promoter-TSS (NM_001308450)	-950.0	NM_001308450	11669.0	Mm.284446	NM_009656	ENSMUSG00000029455	Aldh2	AHD-M1|ALDH-E2|ALDHI|Ahd-5|Ahd5	aldehyde dehydrogenase 2, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127174117-2	chr10	127174017	127174217	+	610.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_177615, exon 12 of 17)	exon (NM_177615, exon 12 of 17)	6528.0	NM_177615	216441.0	Mm.248373	NM_177615	ENSMUSG00000040441	Slc26a10	C78409|D630010I07	solute carrier family 26, member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70621608-2	chr11	70621508	70621708	+	668.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2414.0	NM_009603	11448.0	Mm.4980	NM_009603	ENSMUSG00000014609	Chrne	AChrepsilon|Acre|nAChRE	cholinergic receptor, nicotinic, epsilon polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43402328-1	chr4	43402228	43402428	+	741.0	f1_balb.idr	intron (NM_001037709, intron 1 of 11)	intron (NM_001037709, intron 1 of 11)	-4174.0	NM_199057	100213.0	Mm.235730	NM_199057	ENSMUSG00000035969	Rusc2	AI840675|mKIAA0375	RUN and SH3 domain containing 2	protein-coding	2.56816644925806	1.1411413068365	1.10984321616084	2.57642277050476	2.4564570643694	2.51269613704847	1.11687607759402	1.55382997169631	-0.0240970244301704	0.983858321061717	0.998431161219273
Merged-chr8-71638785-1	chr8	71638685	71638885	+	717.0	f1_c57bl6.idr	intron (NM_001029873, intron 34 of 41)	intron (NM_001029873, intron 34 of 41)	-7679.0	NR_106035	102466799.0		NR_106035	ENSMUSG00000098976	Mir6769b	Gm27546|mmu-mir-6769b	microRNA 6769b	ncRNA	0.861236478925325	1.95786890651273	0.615750674461934	0.360109436043634	0.343465759885438	0.389166289195489	1.13875898093034	0.362126627358885	-2.04516592177769	0.229863065249494	0.723590835750883
Merged-chr2-32589490-2	chr2	32589390	32589590	+	543.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001276425, exon 3 of 6)	exon (NM_001276425, exon 3 of 6)	2412.0	NM_011373	20448.0	Mm.27446	NM_011373	ENSMUSG00000079442	St6galnac4	SIAT7-D|ST6GalNAcIV|Siat7d	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-31938698-3	chr12	31938593	31938793	+	856.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177993, intron 3 of 8)	intron (NM_177993, intron 3 of 8)	11552.0	NM_177993	73389.0	Mm.390461	NM_153198	ENSMUSG00000002996	Hbp1	1700058O05Rik|BE629963|C330012F01Rik|C86454	high mobility group box transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-67344474-2	chr17	67344374	67344574	+	730.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	9985.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-47275791-2	chr4	47275691	47275891	+	987.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009928, intron 14 of 39)	intron (NM_009928, intron 14 of 39)	67779.0	NM_009928	12819.0	Mm.233547	NM_009928	ENSMUSG00000028339	Col15a1	-	collagen, type XV, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-32177033-4	chr16	32176929	32177129	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2771.0	NM_001033539	328660.0	Mm.441006	NM_001033539	ENSMUSG00000075269	Bex6	B020003O03Rik	brain expressed family member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-95801623-2	chr13	95801524	95801724	+	740.0	f0_balb.idr|f1_balb.idr	intron (NM_027711, intron 2 of 35)	intron (NM_027711, intron 2 of 35)	90298.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	1.82885975119589	2.08860322466861	2.58952703820518	1.2332865920966	1.66092235194678	3.47339952999915	2.20164880197755	3.6129840555822	1.85909851320928	0.0427863980686005	0.296475910152291
Merged-chr4-151999675-4	chr4	151999587	151999787	+	987.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3508.0	NM_172705	230936.0	Mm.25582	NM_172705	ENSMUSG00000047777	Phf13	BC029632|Phf5|SPOC1	PHD finger protein 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-55488478-4	chr1	55488389	55488589	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114663, intron 1 of 5)	intron (NM_001114663, intron 1 of 5)	82543.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	4.86145608444065	4.29314069898605	4.15073604787127	4.435942354397	4.70374256094733	5.04730490621541	5.08319760024539	4.59830010052946	0.490925125085324	0.178589446963572	0.649176787922321
Merged-chr15-83043278-2	chr15	83043178	83043378	+	554.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9881.0	NM_001271411	74039.0	Mm.32584	NM_028728	ENSMUSG00000058099	Nfam1	4921501M20Rik|Cnaip	Nfat activating molecule with ITAM motif 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-30950980-1	chr17	30950880	30951080	+	596.0	f1_c57bl6.idr	Intergenic	RLTR18-int|LTR|ERVK	-3703.0	NM_177465	52020.0	Mm.25923	NM_177465	ENSMUSG00000054134	Umodl1	D17Ertd488e	uromodulin-like 1	protein-coding	2.06899878121693	2.3287721104789	1.48628304958425	2.61385210643569	2.08651659904725	2.45563583825095	1.49608788283045	1.45746178411465	-0.609158467997242	0.537027858850893	0.953963493057627
Merged-chr2-84602431-3	chr2	84602341	84602541	+	951.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007615, exon 20 of 20)	3' UTR (NM_007615, exon 20 of 20)	47039.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-156992137-4	chr2	156992035	156992235	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013865)	promoter-TSS (NM_013865)	-24.0	NM_180956	29812.0	Mm.279256	NM_013865	ENSMUSG00000027634	Ndrg3	4833415O14Rik|AI747193|Ndr3	N-myc downstream regulated gene 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98358365-4	chr11	98358279	98358479	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021547)	promoter-TSS (NM_021547)	11.0	NM_021547	59045.0	Mm.265546	NM_021547	ENSMUSG00000018167	Stard3	Mln64|es64	START domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35199578-2	chr17	35199478	35199678	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001278601, exon 3 of 3)	3' UTR (NM_001278601, exon 3 of 3)	2429.0	NM_013693	21926.0	Mm.1293	NM_013693	ENSMUSG00000024401	Tnf	DIF|TNF-a|TNF-alpha|TNFSF2|TNFalpha|Tnfa|Tnfsf1a|Tnlg1f	tumor necrosis factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-86777638-2	chr9	86777538	86777738	+	595.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001277986, intron 24 of 29)	intron (NM_001277986, intron 24 of 29)	34005.0	NM_178738	244954.0	Mm.257629	NM_178738	ENSMUSG00000033491	Prss35	6030424L22Rik|P3D9	protease, serine 35	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-38112765-4	chr3	38112662	38112862	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	95357.0	NR_040541	71342.0	Mm.410782	NR_040541	ENSMUSG00000106002	5430434I15Rik	-	RIKEN cDNA 5430434I15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-93600487-2	chr2	93600387	93600587	+	631.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-41947.0	NM_007442	11695.0	Mm.389389	NM_007442	ENSMUSG00000040310	Alx4	lst	aristaless-like homeobox 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-87038533-3	chr1	87038441	87038641	+	916.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001172157, intron 15 of 21)	intron (NM_001172157, intron 15 of 21)	51387.0	NM_007433	11650.0	Mm.195224	NM_007433	ENSMUSG00000026246	Alppl2	Akp5|C77216|D1Ertd816e|EAP	alkaline phosphatase, placental-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-75067507-4	chr8	75067448	75067648	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011622, exon 13 of 15)	exon (NM_011622, exon 13 of 15)	-26070.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-165735016-3	chr1	165734920	165735120	+	880.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26926.0	NM_178593	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-81426483-2	chr17	81426383	81426583	+	573.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 7 of 8)	intron (NR_104580, intron 7 of 8)	311904.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120437457-6	chr11	120437274	120437474	+	999.595215	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199469, intron 1 of 15)	CpG	326.0	NM_001195023	217365.0	Mm.309520	NM_199469	ENSMUSG00000039703	Nploc4	AK129375|Npl4|mKIAA1499	NPL4 homolog, ubiquitin recognition factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-139401122-3	chr7	139401014	139401214	+	618.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355162, intron 1 of 15)	intron (NM_001355162, intron 1 of 15)	620.0	NM_001355162	212111.0	Mm.28308	NM_183144	ENSMUSG00000025477	Inpp5a	-	inositol polyphosphate-5-phosphatase A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-6570629-4	chr15	6570538	6570738	+	834.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9209.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34297234-1	chr17	34297134	34297334	+	1000.0	f1_balb.idr	Intergenic	Intergenic	-8633.0	NM_010382	14969.0	Mm.22564	NM_010382	ENSMUSG00000060586	H2-Eb1	Eb|H-2Eb|H2Eb|Ia-4|Ia4	histocompatibility 2, class II antigen E beta	protein-coding	1.94448868460074	2.29817482080824	1.98192959070204	1.44956728429199	2.46357653415831	1.74027063995978	1.49180816137305	2.35705725597355	0.355992499941662	0.716795532203912	0.998431161219273
Merged-chr17-35254040-2	chr17	35253940	35254140	+	975.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001252457)	TTS (NM_001252457)	2751.0	NR_106169	102465886.0		NR_106169	ENSMUSG00000098269	Mir8094	Gm27513|mmu-mir-8094	microRNA 8094	ncRNA	-0.0235299191144521	-0.158014487498962	-0.163405773374166	-0.167577219269869	-0.173490593008737	-0.156801545034881	0.642324690769136	0.39589274841965	3.11599243344102	0.179391745160214	1
Merged-chr15-20009893-2	chr15	20009793	20009993	+	828.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	656857.0	NM_022816	64833.0	Mm.352763	NM_022816	ENSMUSG00000047565	Acot10	Acate3|MT-ACT48|p48	acyl-CoA thioesterase 10	protein-coding	-1.58994551673671	-1.55912852307891	-1.56844783632235	-1.57610299769523	-1.18549093183599	-1.55710898902261	-1.56633814807757	-1.57473272746952	1.78703309985663	0.610309988231842	1
Merged-chr1-84924287-4	chr1	84924195	84924395	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027921, intron 2 of 4)	intron (NM_027921, intron 2 of 4)	10788.0	NM_027921	71781.0	Mm.158754	NM_027921	ENSMUSG00000026220	Slc16a14	1110004H10Rik	solute carrier family 16 (monocarboxylic acid transporters), member 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-67859696-4	chr14	67859575	67859775	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_105857)	promoter-TSS (NR_105857)	70.0	NR_105857	102465310.0		NR_105857	ENSMUSG00000098866	Mir6539	Gm27464|mir-6539|mmu-mir-6539	microRNA 6539	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-68557139-4	chr3	68557053	68557253	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113421, intron 2 of 7)	intron (NM_001113421, intron 2 of 7)	-15215.0	NM_013928	30953.0	Mm.331064	NM_013928	ENSMUSG00000027777	Schip1	Nf2ip|Schip-1	schwannomin interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-16856913-4	chr16	16856808	16857008	+	901.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13A|LTR|ERVK	7077.0	NM_001190325	16136.0	Mm.184441	NM_001190325	ENSMUSG00000075370	Igll1	BB139905|Igl-5|Igll|Lambda5	immunoglobulin lambda-like polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-145863300-4	chr2	145863170	145863370	+	859.0166630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028724, intron 9 of 12)	intron (NM_028724, intron 9 of 12)	-39971.0	NM_026425	67877.0	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	4.18641718649071	3.38495931116824	4.51469626425936	4.53138172745732	4.83399397768607	4.68889317412663	3.15863273245219	4.59427271845145	0.29918185773674	0.533532024467352	0.952228804765824
Merged-chr18-25485544-1	chr18	25485444	25485644	+	546.0	f1_c57bl6.idr	intron (NR_155531, intron 12 of 13)	L2|LINE|L2	194204.0	NM_001362337	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-63136213-2	chr14	63136113	63136313	+	574.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007798, intron 4 of 9)	intron (NM_007798, intron 4 of 9)	13751.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-32714057-4	chr5	32714009	32714209	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	32233.0	NM_001347332	320951.0	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	6.48310705525896	6.19585132065559	6.29302552317677	6.59419189842031	6.87149496913472	6.6792741365778	6.69565457038409	6.22926894644033	0.252194332842257	0.228046355994241	0.72106957756012
Merged-chr2-70982593-2	chr2	70982493	70982693	+	986.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145524, intron 3 of 9)	ORR1C1|LTR|ERVL-MaLR	35781.0	NM_001110512	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-37472830-4	chr19	37472734	37472934	+	969.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	7580.0	NR_131009	78640.0	Mm.234265	NR_131008		1700122C19Rik	-	RIKEN cDNA 1700122C19 gene	ncRNA	-0.224846714596936	-0.206376893528483	0.414871646344661	0.736485590953494	-0.223680252387778	-0.205030517603673	-0.21105052273682	-0.216224254208532	-3.98970966307594	0.0981983828385851	1
Merged-chr19-3622381-1	chr19	3622281	3622481	+	763.0	f1_c57bl6.idr	intron (NM_008513, intron 8 of 22)	intron (NM_008513, intron 8 of 22)	-46632.0	NM_028999	52036.0	Mm.284686	NM_028999	ENSMUSG00000024908	Ppp6r3	4930528G08Rik|9130026N02Rik|D19Bwg1430e|D19Ertd703e|Pp6r3|Ppcs3|Pptcs3|Sapl|Saps3|mKIAA1558	protein phosphatase 6, regulatory subunit 3	protein-coding	1.29581536710199	1.47758994487745	0.826467801980328	2.34183170699814	0.99336573500377	1.3153872294151	1.7024292709002	0.814095165383731	-1.18009443484406	0.368384230510968	0.862916999449085
Merged-chr8-71372787-2	chr8	71372805	71373005	+	658.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_122030, intron 2 of 2)	intron (NR_122030, intron 2 of 2)	1607.0	NM_001293800	77090.0	Mm.440170	NM_029865	ENSMUSG00000002396	Ocel1	9430098E02Rik|AI326022|AI593544	occludin/ELL domain containing 1	protein-coding	-0.180460043709739	-0.47131217391133	-0.476568698840391	-0.480656111171322	-0.486480978198429	-0.470133582346508	0.565537862236202	-0.479940014569958	2.24370388155188	0.396591400225246	1
Merged-chr2-73526885-4	chr2	73526778	73526978	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	2609.0	NM_153138	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-79545233-3	chr12	79545137	79545337	+	730.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	247886.0	NM_001252562	19363.0	Mm.341756	NM_009014	ENSMUSG00000059060	Rad51b	AI553500|R51H2|Rad51l1|mREC2	RAD51 paralog B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-87172344-2	chr9	87172278	87172478	+	635.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001101482, intron 2 of 3)	intron (NM_001101482, intron 2 of 3)	23150.0	NM_001359955	244958.0	Mm.335337	NM_001101482	ENSMUSG00000042761	Mrap2	BB633055	melanocortin 2 receptor accessory protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-90071649-4	chr7	90071551	90071751	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42492.0	NR_110364	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	4.88149082682228	5.14983849609675	4.38573796438836	5.39136290719014	4.94793824104438	4.93282894787464	4.41925742602505	5.33607773386308	-0.0610316648216411	0.863657380424785	0.998431161219273
Merged-chr1-171257358-3	chr1	171257254	171257454	+	683.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172845, intron 7 of 8)	intron (NM_172845, intron 7 of 8)	7225.0	NM_172845	240913.0	Mm.491147	NM_172845	ENSMUSG00000006403	Adamts4	ADAM-TS4|ADAMTS-2|ADMP-1	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 4	protein-coding	0.799710891189881	0.748670049327528	0.724667608890119	0.705970698922982	0.679238905362364	1.18267113763925	0.729982671283508	1.18369494698177	1.26303076230051	0.383359064044932	1
Merged-chr17-86237524-3	chr17	86237410	86237610	+	828.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011104, intron 1 of 14)	intron (NM_011104, intron 1 of 14)	49668.0	NR_045435	72104.0	Mm.443401	NR_045435	ENSMUSG00000100738	2010106C02Rik	-	RIKEN cDNA 2010106C02 gene	ncRNA	1.05063114401753	0.865059918340265	0.622014908463975	1.35555793916464	1.17677996613521	1.78590031903209	0.624862914721654	0.613724265485872	0.618453694873849	0.687105120301658	0.996533206832645
Merged-chr13-42248863-4	chr13	42248752	42248952	+	922.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52624.0	NM_010104	13614.0	Mm.14543	NM_010104	ENSMUSG00000021367	Edn1	ET-1|PPET1|preproET	endothelin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-93180349-2	chr2	93180249	93180449	+	933.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7199.0	NM_001356536	277414.0	Mm.41033	NM_001025246	ENSMUSG00000068735	Trp53i11	Tp53i11	transformation related protein 53 inducible protein 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-137683312-2	chr4	137683259	137683459	+	743.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081155, intron 1 of 24)	intron (NM_001081155, intron 1 of 24)	1732.0	NM_001256218	110351.0	Mm.180763	NM_029563	ENSMUSG00000041351	Rap1gap	1300019I11Rik|2310004O14Rik|AI427470|ARPP-90|Gap|Rap1GAP1|Rap1ga1	Rap1 GTPase-activating protein	protein-coding	0.925979918475349	0.630118948215606	1.53139553075979	0.605422225056735	0.934896938906171	0.633193351905995	1.02859253732157	1.88425682485136	0.881961750913818	0.561151907326239	0.960350977191929
Merged-chr16-77005961-2	chr16	77005861	77006061	+	547.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_040573, intron 2 of 2)	MERVK26-int|LTR|ERVK	4920.0	NR_040573	76601.0	Mm.396217	NR_040573	ENSMUSG00000100857	1700041M19Rik	-	RIKEN cDNA 1700041M19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-80469276-2	chr18	80469165	80469365	+	1000.0	f0_balb.idr|f0_c57.idr	exon (NM_026295, exon 1 of 13)	exon (NM_026295, exon 1 of 13)	402.0	NM_026295	67655.0	Mm.312893	NM_026295	ENSMUSG00000033323	Ctdp1	4930563P03Rik|AW553592	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-75709404-4	chr15	75709286	75709486	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163465, intron 4 of 14)	MIR3|SINE|MIR	5098.0	NM_008164	14787.0	Mm.57052	NM_008164	ENSMUSG00000022580	Rhpn1	BB023497|Grbp|Rhophilin|mKIAA1929	rhophilin, Rho GTPase binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-181189150-3	chr2	181189048	181189248	+	898.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_151465)	TTS (NR_151465)	1901.0	NM_001356427	66496.0	Mm.213943	NM_025598	ENSMUSG00000016344	Ppdpf	0610012G23Rik|2610317A05Rik|2700038C09Rik|3110053G12Rik	pancreatic progenitor cell differentiation and proliferation factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3055032-2	chr4	3054932	3055132	+	664.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-117051.0	NM_001167534	100312470.0	Mm.480297	NM_001167534	ENSMUSG00000115072	Vmn1r2	Gm11776	vomeronasal 1 receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-45574314-4	chr17	45574209	45574409	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1048.0	NM_008302	15516.0	Mm.2180	NM_008302	ENSMUSG00000023944	Hsp90ab1	90kDa|AL022974|C81438|Hsp84|Hsp84-1|Hsp90|Hspcb	heat shock protein 90 alpha (cytosolic), class B member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-68749391-4	chr7	68749311	68749511	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025549)	promoter-TSS (NM_025549)	-173.0	NM_025549	66412.0	Mm.251199	NM_025549	ENSMUSG00000042659	Arrdc4	2410003C09Rik|AV216361	arrestin domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-13152376-3	chr4	13152279	13152479	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	245542.0	NM_001171801	208820.0	Mm.12057	NM_173746	ENSMUSG00000055963	Triqk	C130086A10|Gm11818	triple QxxK/R motif containing	protein-coding	2.6904741707859	1.55371155947803	2.69975306533028	3.28306062907722	3.55398966356073	2.95130715785551	1.80363939127181	4.11532897958695	1.10245866817114	0.173286578569716	0.640902961210202
Merged-chr18-38923233-3	chr18	38923134	38923334	+	915.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033789, intron 3 of 4)	intron (NM_001033789, intron 3 of 4)	-4535.0	NM_010197	14164.0	Mm.241282	NM_010197	ENSMUSG00000036585	Fgf1	Dffrx|Fam|Fgf-1|Fgfa	fibroblast growth factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27723011-2	chr2	27722911	27723111	+	640.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290482, intron 1 of 9)	intron (NM_001290482, intron 1 of 9)	12428.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119392965-4	chr11	119392877	119393077	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	2505.0	NR_035453	100316690.0		NR_035453	ENSMUSG00000088015	Mir1932	mir-1932|mmu-mir-1932	microRNA 1932	ncRNA	4.0648354512375	4.03312213779516	4.10355312857883	3.86101176351899	4.09688309976489	4.82963766636975	4.60412209727903	3.38136046070913	0.412831373553551	0.368925900026474	0.863136285888838
Merged-chr15-86430468-2	chr15	86430368	86430568	+	669.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358062, intron 8 of 9)	intron (NM_001358062, intron 8 of 9)	152793.0	NM_001358062	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-35643941-4	chr8	35643841	35644041	+	978.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081279, intron 1 of 2)	intron (NM_001081279, intron 1 of 2)	-54921.0	NR_040376	100504714.0	Mm.381744	NR_040376	ENSMUSG00000097357	Gm16793	-	predicted gene, 16793	ncRNA	3.75950705960974	4.86079034142049	4.79869645145649	4.34283907252775	5.10663905332487	4.89323003761575	4.49695421763616	5.47007406346281	0.668135111506689	0.0852464163661489	0.448328391391461
Merged-chr7-101396317-2	chr7	101396217	101396417	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001040111, intron 16 of 33)	intron (NM_001040111, intron 16 of 33)	1929.0	NM_198096	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-27209168-4	chr7	27209158	27209358	+	902.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181593, intron 6 of 6)	MIR3|SINE|MIR	3722.0	NR_035422	100316839.0		NR_035422	ENSMUSG00000080533	Mir1191	Mirn1191|mmu-mir-1191|mmu-mir-1191a	microRNA 1191	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44900948-2	chr7	44900848	44901048	+	643.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_027376)	TTS (NM_027376)	4869.0	NM_027376	70300.0	Mm.276298	NM_027376	ENSMUSG00000011658	Fuz	2600013E07Rik|b2b1273Clo	fuzzy planar cell polarity protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-34769864-2	chr14	34769764	34769964	+	691.625	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50272.0	NM_008166	14803.0	Mm.121569	NM_008166	ENSMUSG00000041078	Grid1	GluD1|GluRdelta1	glutamate receptor, ionotropic, delta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21718973-4	chr9	21718867	21719067	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-4609.0	NM_001252658	16835.0	Mm.3213	NM_010700	ENSMUSG00000032193	Ldlr	Hlb301	low density lipoprotein receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-102012198-1	chr5	102012098	102012298	+	682.0	f1_c57bl6.idr	intron (NM_172882, intron 2 of 66)	CT-rich|Low_complexity|Low_complexity	57723.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0.0459956639332704	-0.396887814837701	0.148561257098004	-0.245542126572327	-0.40764763476057	-0.396035667758816	-0.399829192670649	-0.403055046398238	-3.48890046272546	0.161071232427363	1
Merged-chr10-77504349-2	chr10	77504249	77504449	+	913.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_133998, intron 2 of 5)	intron (NM_133998, intron 2 of 5)	11464.0	NM_133998	108707.0	Mm.259547	NM_133998	ENSMUSG00000032977	Fam207a	1810008A18Rik|AI303072	family with sequence similarity 207, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-64876441-4	chr1	64876331	64876531	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039493, intron 5 of 7)	intron (NM_001039493, intron 5 of 7)	80393.0	NM_001039493	241075.0	Mm.239534	NM_175509	ENSMUSG00000051344	Plekhm3	9430067K14Rik|A230102O09Rik|AI449570|DAPR|Plekhm1l	pleckstrin homology domain containing, family M, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85665027-2	chr12	85664927	85665127	+	909.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21693.0	NM_016767	53314.0	Mm.6672	NM_016767	ENSMUSG00000034266	Batf	B-ATF|SFA-2	basic leucine zipper transcription factor, ATF-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125345767-4	chr6	125345663	125345863	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011324)	TTS (NM_011324)	-3960.0	NM_011609	21937.0	Mm.1258	NM_011609	ENSMUSG00000030341	Tnfrsf1a	CD120a|FPF|TNF-R|TNF-R-I|TNF-R1|TNF-R55|TNF-alphaR1|TNFAR|TNFR60|TNFRI|TNFRp55|TNFalpha-R1|Tnfr-2|Tnfr1|p55|p55-R	tumor necrosis factor receptor superfamily, member 1a	protein-coding	-0.626846855428286	-0.611365541566103	-0.616383860702739	-0.425638198330378	-0.625865975488647	-0.610241327970269	0.444929556770029	-0.619606094534248	2.85353677691058	0.287975659641037	1
Merged-chr17-35824554-4	chr17	35824385	35824585	+	911.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008027, intron 4 of 12)	intron (NM_008027, intron 4 of 12)	1128.0	NM_008027	14251.0	Mm.2931	NM_008027	ENSMUSG00000059714	Flot1	reggie-2	flotillin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-29542394-1	chr15	29542294	29542494	+	542.0	f1_balb.idr	Intergenic	L1_Mur2|LINE|L1	171010.0	NR_039542	100628607.0		NR_039542	ENSMUSG00000092639	Mir3964	mmu-mir-3964|mu-mir-3964	microRNA 3964	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44066984-4	chr9	44066873	44067073	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198092)	promoter-TSS (NM_198092)	-48.0	NM_198092	53376.0	Mm.272770	NM_016808	ENSMUSG00000032010	Usp2	B930035K21Rik|Ubp41	ubiquitin specific peptidase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128746714-4	chr2	128746613	128746813	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 4 of 18)	intron (NM_008587, intron 4 of 18)	47798.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	1.02844093375484	1.32357875709232	0.427892751249763	0.420656041006799	0.836602297072105	0.986100769874254	0.429950569622048	0.421924654385995	-0.861753451344843	0.628318330904982	1
Merged-chr12-85543049-4	chr12	85542962	85543162	+	987.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-56043.0	NM_001205052	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-20899504-4	chr2	20899389	20899589	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001128084, intron 3 of 24)	intron (NM_001128084, intron 3 of 24)	68232.0	NM_001081364	71435.0	Mm.28507	NM_001081364	ENSMUSG00000036591	Arhgap21	5530401C11Rik|AA416458|ARHGAP10	Rho GTPase activating protein 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-63460539-4	chr10	63460441	63460641	+	928.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164376, intron 1 of 17)	intron (NM_001164376, intron 1 of 17)	3030.0	NM_001164376	216033.0	Mm.444692	NM_177612	ENSMUSG00000060843	Ctnna3	4930429L08Rik|4933408A16|Catna3|Vr22	catenin (cadherin associated protein), alpha 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47437956-2	chr17	47437856	47438056	+	903.142822	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029296)	promoter-TSS (NM_029296)	-581.0	NM_029296	75462.0	Mm.46129	NM_029296	ENSMUSG00000047150	1700001C19Rik	-	RIKEN cDNA 1700001C19 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81303931-3	chr10	81303853	81304053	+	947.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293647, intron 1 of 17)	intron (NM_001293647, intron 1 of 17)	10990.0	NM_001146687	18717.0	Mm.24222	NM_008844	ENSMUSG00000034902	Pip5k1c	AI115456|AI835305|Pip5kIgamma	phosphatidylinositol-4-phosphate 5-kinase, type 1 gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30411076-2	chr2	30410976	30411176	+	927.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007760, intron 2 of 13)	intron (NM_007760, intron 2 of 13)	4672.0	NM_007760	12908.0	Mm.20396	NM_007760	ENSMUSG00000026853	Crat	AW107812|CARAT	carnitine acetyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-93888540-6	chr16	93888418	93888618	+	924.444458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028083, intron 5 of 13)	intron (NM_028083, intron 5 of 13)	4617.0	NM_028083	110749.0	Mm.274222	NM_028083	ENSMUSG00000022945	Chaf1b	2600017H24Rik|C76145|CAF-I p60|CAF-Ip60|CAF1|CAF1A|CAF1P60|MPHOSPH7	chromatin assembly factor 1, subunit B (p60)	protein-coding	0.715148518124098	0.752208824341811	0.282379348742448	0.277960471389339	0.52676102905571	0.628638562055508	0.452798413105863	0.434565513194173	-0.142883281732115	0.934451391927974	1
Merged-chr5-122393505-2	chr5	122393405	122393605	+	734.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019824, intron 1 of 6)	intron (NM_019824, intron 1 of 6)	1627.0	NM_019824	56378.0	Mm.275942	NM_019824	ENSMUSG00000029465	Arpc3	1110006A04Rik|p21-ARC|p21-Ar|p21Arc	actin related protein 2/3 complex, subunit 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53356690-2	chr4	53356590	53356790	+	725.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER20|DNA|hAT-Charlie	-83723.0	NM_001159633	100434.0	Mm.482207	NM_133891	ENSMUSG00000028412	Slc44a1	2210409B22Rik|4833416H08Rik|AW547365|CHTL1|CTL1|Cdw92	solute carrier family 44, member 1	protein-coding	-1.26571374789235	-1.51209590594483	-1.52146493977932	-1.38174326885381	-1.5409024774237	-1.51006559722904	-1.51934399588257	-1.52778336220656	-1.78996300869195	0.608863169873916	1
Merged-chr2-32576245-2	chr2	32576145	32576345	+	650.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198191, intron 1 of 9)	intron (NM_198191, intron 1 of 9)	527.0	NM_198191	227733.0	Mm.78923	NM_198191	ENSMUSG00000046854	Pip5kl1	BC028795	phosphatidylinositol-4-phosphate 5-kinase-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-103692279-4	chr5	103692204	103692404	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-36572.0	NM_001163550	74218.0	Mm.159141	NM_028824	ENSMUSG00000029320	1700016H13Rik	-	RIKEN cDNA 1700016H13 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-13946706-4	chr10	13946606	13946806	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19369.0	NM_001358783	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-3146220-1	chr11	3146120	3146320	+	1000.0	f1_balb.idr	exon (NM_030207, exon 15 of 33)	exon (NM_030207, exon 15 of 33)	22199.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-132005972-2	chr2	132005872	132006072	+	641.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175445, intron 4 of 10)	intron (NM_175445, intron 4 of 10)	24016.0	NM_175445	215653.0	Mm.204737	NM_175445	ENSMUSG00000027339	Rassf2	3830431H01Rik|9030412M04Rik|AI852669|AW495050	Ras association (RalGDS/AF-6) domain family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-66224415-2	chr14	66224315	66224515	+	654.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 1 of 30)	ID_B1|SINE|B4	-10591.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55815075-2	chr14	55814975	55815175	+	915.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR17|LTR|ERVK	-9720.0	NM_001168346	73181.0	Mm.27908	NM_023699	ENSMUSG00000023411	Nfatc4	3110041H08Rik|AW107667|AW546455|Nfat3	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-74399294-2	chr1	74399194	74399394	+	611.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4984.0	NR_029743	387219.0		NR_029743	ENSMUSG00000065468	Mir26b	Mirn26b|mir-26b|mmu-mir-26b	microRNA 26b	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-100608086-4	chr5	100607983	100608183	+	962.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35878.0	NM_139198	231507.0	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-12832348-1	chr19	12832248	12832448	+	652.0	f1_balb.idr	intron (NM_134152, intron 7 of 8)	intron (NM_134152, intron 7 of 8)	-29429.0	NM_146702	258697.0	Mm.223132	NM_146702	ENSMUSG00000046272	Olfr1444	MOR202-4	olfactory receptor 1444	protein-coding	0.278757702091353	0.156166710751874	0.150383998273314	0.668654890611413	0.699653122749822	0.157470673545114	0.151659157279166	0.675546853121385	0.792554106123732	0.695143988698477	1
Merged-chr5-5494825-1	chr5	5494725	5494925	+	540.0	f1_c57bl6.idr	Intergenic	Intergenic	-15682.0	NM_001200025	381716.0	Mm.276086	NM_001200025	ENSMUSG00000079666	1700015F17Rik	Gm1686	RIKEN cDNA 1700015F17 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76522258-2	chr15	76522158	76522358	+	603.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_130893)	promoter-TSS (NM_130893)	-129.0	NM_130893	170729.0	Mm.218747	NM_130893	ENSMUSG00000048385	Scrt1	-	scratch family zinc finger 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-67421371-4	chr13	67421283	67421483	+	911.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177811)	promoter-TSS (NM_177811)	35.0	NM_177811	328274.0	Mm.222470	NM_177811	ENSMUSG00000055560	Zfp459	9930025G17Rik|Rslcan-14	zinc finger protein 459	protein-coding	3.10897207948314	3.92394638400472	3.94039316140755	1.72892866620157	4.5772958844396	5.26405546637989	5.36345203913103	4.22075255577052	1.99043193161896	0.000247738169559509	0.00636934833937498
Merged-chr19-5486031-2	chr19	5485931	5486131	+	755.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_153768, exon 6 of 16)	non-coding (NR_153768, exon 6 of 16)	2348.0	NM_027877	71711.0	Mm.27697	NM_027877	ENSMUSG00000024906	Mus81	1200008A18Rik|AI182501|AW045863	MUS81 structure-specific endonuclease subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-89271437-2	chr4	89271337	89271537	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10755.0	NM_001040654	12578.0	Mm.4733	NM_009877	ENSMUSG00000044303	Cdkn2a	ARF-INK4a|Arf|INK4a-ARF|Ink4a/Arf|MTS1|Pctr1|p16|p16(INK4a)|p16INK4a|p19<ARF>|p19ARF	cyclin dependent kinase inhibitor 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111423786-2	chr12	111423686	111423886	+	626.666626	f1_balb.idr|f1_c57bl6.idr	exon (NM_028807, exon 4 of 13)	exon (NM_028807, exon 4 of 13)	6341.0	NM_001289488	74190.0	Mm.248640	NM_028807	ENSMUSG00000021280	Exoc3l4	1200009I06Rik|1600013K19Rik	exocyst complex component 3-like 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-108284073-4	chr3	108283922	108284122	+	783.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271599)	promoter-TSS (NM_001271599)	-42.0	NM_001271599	20661.0	Mm.157119	NM_019972	ENSMUSG00000068747	Sort1	2900053A11Rik|AI852375|Ntr3|Ntsr3	sortilin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-56152036-3	chr13	56151936	56152136	+	858.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16486.0	NM_001159513	26914.0	Mm.283802	NM_012015	ENSMUSG00000015937	H2afy	H2AF12M|mH2a1|macroH2A1	H2A histone family, member Y	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95894703-2	chr3	95894603	95894803	+	890.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146104, intron 1 of 5)	intron (NM_146104, intron 1 of 5)	782.0	NM_146134	226548.0	Mm.306954	NM_146104	ENSMUSG00000015750	Aph1a	6530402N02Rik|APH-1a	aph1 homolog A, gamma secretase subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-40581453-2	chr6	40581353	40581553	+	627.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038604, intron 5 of 6)	RSINE1|SINE|B4	4352.0	NM_021364	23845.0	Mm.103765	NM_021364	ENSMUSG00000029915	Clec5a	Clecsf5|Ly100|MDL-1|Mdl1	C-type lectin domain family 5, member a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-120608457-2	chr1	120608357	120608557	+	552.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_010133)	TTS (NM_010133)	5970.0	NM_010133	13798.0	Mm.2657	NM_010133	ENSMUSG00000058665	En1	En-1|Mo-en.1|engrailed-1	engrailed 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24446985-2	chr17	24446885	24447085	+	632.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_125990, intron 5 of 13)	intron (NR_125990, intron 5 of 13)	-3884.0	NM_025718	66705.0	Mm.29017	NM_025718	ENSMUSG00000024136	Dnase1l2	4733401H14Rik	deoxyribonuclease 1-like 2	protein-coding	-1.36245527554381	-1.47758440807466	-1.48704571646499	-1.19707836829368	-1.50667469222183	-1.47553410307769	-1.4849038836314	-1.49342636832094	-1.86907304515541	0.591535440840713	1
Merged-chr4-45514223-4	chr4	45514215	45514415	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033306, intron 1 of 5)	intron (NM_001033306, intron 1 of 5)	16513.0	NM_001033306	230126.0	Mm.251716	NM_001033306	ENSMUSG00000044813	Shb	BC028832	src homology 2 domain-containing transforming protein B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-6172251-4	chr7	6172178	6172378	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146024)	promoter-TSS (NM_001146024)	-235.0	NM_028316	72667.0	Mm.274089	NM_028316	ENSMUSG00000044876	Zfp444	2810031J10Rik|6230401O10Rik|mFLJ00134	zinc finger protein 444	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-138326297-4	chr4	138326208	138326408	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026880)	promoter-TSS (NM_026880)	-12.0	NM_026880	68943.0	Mm.18539	NM_026880	ENSMUSG00000028756	Pink1	1190006F07Rik|AU042772|AW557854|BRPK|mFLJ00387	PTEN induced putative kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-80793592-2	chr12	80793490	80793690	+	607.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001242419, intron 1 of 6)	intron (NM_001242419, intron 1 of 6)	3058.0	NM_001242419	217684.0	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139735774-4	chr5	139735681	139735881	+	813.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_174850, intron 1 of 16)	intron (NM_174850, intron 1 of 16)	552.0	NM_174850	231830.0	Mm.240510	NM_174850	ENSMUSG00000036718	Micall2	A930021H16Rik|JRAB|MICAL-L2|mFLJ00139	MICAL-like 2	protein-coding	2.90813383818091	1.871282434665	2.71521768235755	2.08607258490549	2.5192374496815	1.37279663478353	2.97798235690914	1.55767763483863	-0.37249633871976	0.696334276190366	0.997923870727665
Merged-chr11-59525442-4	chr11	59525340	59525540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16129.0	NM_001359638	216799.0	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-79071847-4	chr15	79071753	79071953	+	927.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-3370.0	NM_145139	223691.0	Mm.206404	NM_145139	ENSMUSG00000033047	Eif3l	0610011H21Rik|D15N1e|Eif3eip|Eif3ip|Eif3s6ip|HSP-66Y|PAF67	eukaryotic translation initiation factor 3, subunit L	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-152395944-4	chr3	152395871	152396071	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001287139)	promoter-TSS (NM_001287139)	-32.0	NM_001080755	108946.0	Mm.379292	NM_198416	ENSMUSG00000039068	Zzz3	3110065C23Rik|6430567E01Rik|AA408566|AI481057|AW556059|R75514	zinc finger, ZZ domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-76183885-4	chr5	76183792	76183992	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011626)	promoter-TSS (NM_011626)	12.0	NM_011626	21982.0	Mm.790	NM_011626	ENSMUSG00000029234	Tmem165	AV026557|Tpardl|Tparl|pFT27	transmembrane protein 165	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-63617562-3	chr15	63617506	63617706	+	789.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-137998.0	NR_045279	432958.0	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-102863735-3	chr2	102863681	102863881	+	608.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039150, intron 2 of 13)	intron (NM_001039150, intron 2 of 13)	37884.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-135705314-4	chr7	135705205	135705405	+	829.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081117, intron 7 of 13)	intron (NM_001081117, intron 7 of 13)	11074.0	NM_001081117	17345.0	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97630729-2	chr11	97630629	97630829	+	616.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1013.0	NM_175332	103551.0	Mm.24506	NM_175332	ENSMUSG00000043439	Epop	AA409164|AI413509|AW539173|E13|E130012A19Rik|esPRC2p48	elongin BC and polycomb repressive complex 2 associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-35394296-4	chr8	35394187	35394387	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18546.0	NM_177741	244416.0	Mm.247126	NM_177741	ENSMUSG00000046794	Ppp1r3b	6430576E21|AW821953|GL|PTG	protein phosphatase 1, regulatory (inhibitor) subunit 3B	protein-coding	6.08139746145334	6.79923133916121	6.5317094772512	5.95633200471182	6.32870885761713	6.78117604377034	5.74874978953563	6.29697799189932	-0.0475507037035847	0.854009718001778	0.998431161219273
Merged-chr5-147726497-2	chr5	147726397	147726597	+	582.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010228)	promoter-TSS (NM_010228)	-509.0	NM_010228	14254.0	Mm.389712	NM_010228	ENSMUSG00000029648	Flt1	AI323757|Flt-1|VEGFR-1|VEGFR1|sFlt1	FMS-like tyrosine kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-83200368-3	chr8	83200238	83200438	+	827.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111304, intron 1 of 20)	intron (NM_001111304, intron 1 of 20)	34986.0	NM_027758	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	3.03420460766986	1.42825777855323	1.37813768624434	2.80575708792409	3.39689974724591	3.02033846668445	1.68223730687479	3.45910896078535	1.19000744783768	0.202432266848942	0.688690643947148
Merged-chr11-53622625-2	chr11	53622525	53622725	+	568.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3960.0	NM_021283	16189.0	Mm.276360	NM_021283	ENSMUSG00000000869	Il4	BSF-1|Il-4	interleukin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-63562394-4	chr4	63562294	63562494	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144905, intron 2 of 9)	intron (NM_144905, intron 2 of 9)	2167.0	NM_144905	230279.0	Mm.41523	NM_144905	ENSMUSG00000045917	Tmem268	6330416G13Rik|AW492431|bM230C2.2	transmembrane protein 268	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-104277736-3	chr9	104277633	104277833	+	838.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14803.0	NM_001163026	235567.0	Mm.217256	NM_001163026	ENSMUSG00000032560	Dnajc13	D030002L11Rik|Gm1124|RME-8|Rme8|mKIAA0678	DnaJ heat shock protein family (Hsp40) member C13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101544971-1	chr7	101544871	101545071	+	547.0	f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	10831.0	NM_007490	11871.0	Mm.439746	NM_007490	ENSMUSG00000092517	Art2a-ps	ARTC2|Art2a|Ly92a|Rt-6|Rt6|Rt6-1	ADP-ribosyltransferase 2a, pseudogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-136150722-2	chr4	136150619	136150819	+	922.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6897.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91272996-4	chr2	91272876	91273076	+	990.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001311144)	TTS (NM_001311144)	7861.0	NM_023854	77038.0	Mm.43636	NM_023854	ENSMUSG00000027255	Arfgap2	2310032E02Rik|Zfp289	ADP-ribosylation factor GTPase activating protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-25301868-2	chr17	25301782	25301982	+	610.099976	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB8|LINE|L1	3488.0	NM_178372	328780.0	Mm.127166	NM_178372	ENSMUSG00000056399	Prss34	C130091P12|Mcp11|mMcp-11	protease, serine 34	protein-coding	0.862355039183111	0.733839652879983	0.92288318777438	0.712429787352252	1.43731685548497	1.14026755487096	1.48449386816191	1.6129505753783	3.34173856145583	0.0274600857416387	0.223072914458064
Merged-chr9-21013814-2	chr9	21013714	21013914	+	591.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2126.0	NM_010493	15894.0	Mm.435508	NM_010493	ENSMUSG00000037405	Icam1	CD54|Icam-1|Ly-47|MALA-2	intercellular adhesion molecule 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-22856919-2	chr16	22856819	22857019	+	660.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026400)	promoter-TSS (NM_026400)	750.0	NM_001081368	70573.0	Mm.68291	NM_001081368	ENSMUSG00000004462	Tbccd1	5730478M09Rik|AU015083|BB165076	TBCC domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-29239842-2	chr7	29239742	29239942	+	687.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357664, intron 1 of 7)	intron (NM_001357664, intron 1 of 7)	1385.0	NM_001357664	77254.0	Mm.36699	NM_029887	ENSMUSG00000030588	Yif1b	9430029K10Rik|Yip1b	Yip1 interacting factor homolog B (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-15126184-3	chr9	15126082	15126282	+	937.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	-14074.0	NM_001164797	244698.0	Mm.325134	NM_001164797	ENSMUSG00000031936	Hephl1	Gm509|Zp|zyklopen	hephaestin-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-42061055-2	chr13	42060954	42061154	+	682.5	f0_balb.idr|f0_c57.idr	intron (NM_007772, intron 2 of 8)	intron (NM_007772, intron 2 of 8)	9033.0	NM_007772	110521.0	Mm.4808	NM_007772	ENSMUSG00000021366	Hivep1	Cryabp1	human immunodeficiency virus type I enhancer binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-128236033-2	chr7	128235933	128236133	+	849.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177001, exon 1 of 1)	3' UTR (NM_177001, exon 1 of 1)	-1324.0	NM_146205	233912.0	Mm.475117	NM_146205	ENSMUSG00000042178	Armc5	AW049683|BC032200	armadillo repeat containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64269689-4	chr5	64269597	64269797	+	984.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 5 of 18)	intron (NM_001289514, intron 5 of 18)	39340.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-27200861-3	chr3	27200744	27200944	+	808.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 1 of 4)	intron (NM_178772, intron 1 of 4)	17840.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-118091592-2	chr10	118091492	118091692	+	844.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50195.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45562375-3	chr7	45562274	45562474	+	879.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025330, intron 5 of 8)	intron (NM_025330, intron 5 of 8)	7446.0	NM_025330	66065.0	Mm.285710	NM_025330	ENSMUSG00000030825	Hsd17b14	0610039E24Rik|Dhrs10|retSDR3	hydroxysteroid (17-beta) dehydrogenase 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-90679423-4	chr15	90679346	90679546	+	997.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025815)	promoter-TSS (NM_025815)	-58.0	NM_001357979	66871.0	Mm.290991	NM_025815	ENSMUSG00000052560	Cpne8	1200003E11Rik|1500031E20Rik	copine VIII	protein-coding	0.931275833476503	1.00664454888146	2.28225896477835	1.93253336685984	1.48227689536968	1.01187231324334	2.38332878050889	1.83139271316371	0.260716268376204	0.838068108296776	0.998431161219273
Merged-chr7-63937788-4	chr7	63937688	63937888	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021366, intron 1 of 1)	CpG	1127.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-139025266-4	chr3	139025174	139025374	+	983.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356388, intron 2 of 13)	intron (NM_001356388, intron 2 of 13)	49927.0	NM_145544	229877.0	Mm.28893	NM_145544	ENSMUSG00000028149	Rap1gds1	BC011279|GDS1	RAP1, GTP-GDP dissociation stimulator 1	protein-coding	1.25638195020347	1.13876862014198	0.539020336496673	0.333568731384137	0.753360011801879	0.351391591254496	0.342470380787357	0.334783799425046	-2.42436853756953	0.194400850152995	1
Merged-chr1-74312440-2	chr1	74312340	74312540	+	600.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039509, intron 2 of 9)	MIR|SINE|MIR	-8104.0	NM_027154	69660.0	Mm.261182	NM_027154	ENSMUSG00000006301	Tmbim1	2310061B02Rik|AA960455|AU024746|C78899|RECS1|Tmbib1|mKIAA4161	transmembrane BAX inhibitor motif containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-55125091-3	chr18	55124986	55125186	+	859.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-132495.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	1.09103967632875	1.95133420487193	1.35365801278115	0.603314697199668	0.584473316538132	1.67997307673828	0.619903770917391	0.605598326705188	-1.28228826170734	0.416354918426194	0.897120107712695
Merged-chr19-10856829-2	chr19	10856729	10856929	+	546.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_133804)	TTS (NM_133804)	12950.0	NM_133804	98170.0	Mm.490254	NM_133804	ENSMUSG00000024736	Tmem132a	6720481D13Rik|Hspa5bp1|Orai1|R74613	transmembrane protein 132A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-121848943-4	chr5	121848848	121849048	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359949)	promoter-TSS (NM_001359949)	-49.0	NM_175474	231717.0	Mm.12654	NM_175474	ENSMUSG00000044134	Fam109a	A230106M15Rik|AU017694|IPIP27A|Ses1	family with sequence similarity 109, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46046635-1	chr19	46046535	46046735	+	698.0	f1_c57bl6.idr	Intergenic	Intergenic	-1324.0	NM_001113408	16825.0	Mm.327442	NM_010697	ENSMUSG00000025223	Ldb1	CLIM2|NLI	LIM domain binding 1	protein-coding	-0.464423462919748	-0.903027080447282	-0.741008041355291	-0.91287682519902	-0.915701692963065	-0.900481341286522	-0.736846761486662	-0.912526508101001	-1.80083077667672	0.535000148584322	1
Merged-chr8-3337173-3	chr8	3337065	3337265	+	809.488892	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	-16250.0	NM_001033378	319493.0	Mm.234565	NM_001033378	ENSMUSG00000074497	A430078G23Rik	-	RIKEN cDNA A430078G23 gene	protein-coding	3.02064822510514	2.73653432413505	3.35237474253015	1.85032856961935	3.19203225503686	3.63771161370385	3.37793008900045	2.70661667485817	0.711861622583479	0.300666731861922	0.801975674075776
Merged-chr12-55491939-4	chr12	55491861	55492061	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010907, intron 1 of 5)	intron (NM_010907, intron 1 of 5)	686.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-172440024-2	chr2	172439924	172440124	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025542)	promoter-TSS (NM_025542)	-554.0	NM_025542	66404.0	Mm.25157	NM_025542	ENSMUSG00000027502	Rtf2	1700067C04Rik|2410001C21Rik|5730427M17Rik|AA589417|Rtfdc1	replication termination factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114795514-2	chr11	114795414	114795614	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028055, intron 1 of 2)	intron (NM_028055, intron 1 of 2)	378.0	NM_028055	72014.0	Mm.38347	NM_028055	ENSMUSG00000000202	Btbd17	1500005I02Rik|Tango10a	BTB (POZ) domain containing 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-121290177-3	chr10	121290079	121290279	+	967.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361015, intron 8 of 12)	intron (NM_001361015, intron 8 of 12)	21217.0	NM_029057	74694.0	Mm.233833	NM_029057	ENSMUSG00000052302	Tbc1d30	4930505D03Rik|9530013E20Rik	TBC1 domain family, member 30	protein-coding	1.1491259222817	2.25719971635422	1.88309484341079	2.88622470654564	2.12703526882219	1.77513102434066	1.4977386370816	2.90136519757976	-0.00921846173404286	0.992851733488347	0.998431161219273
Merged-chr4-136464398-2	chr4	136464298	136464498	+	598.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5363.0	NM_024452	269593.0	Mm.485824	NM_024452	ENSMUSG00000001089	Luzp1	2700072H04Rik|AI266952|Luzp|mFLJ00226	leucine zipper protein 1	protein-coding	3.22896509997609	2.33346548285245	2.25744079365766	2.81051093955314	3.13791289127636	2.65923952835041	2.80950237461904	2.8246338195331	0.264849403231037	0.709941602886021	0.998431161219273
Merged-chr16-65561629-2	chr16	65561529	65561729	+	804.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026879, intron 1 of 5)	intron (NM_026879, intron 1 of 5)	1068.0	NM_026879	68942.0	Mm.432944	NM_026879	ENSMUSG00000004843	Chmp2b	1190006E07Rik	charged multivesicular body protein 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-32799721-2	chr12	32799621	32799821	+	778.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	-20614.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-35810227-2	chr1	35810127	35810327	+	872.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-258173.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-84587730-4	chr6	84587599	84587799	+	836.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177713, intron 2 of 6)	CpG	6111.0	NM_175475	232174.0	Mm.255246	NM_175475	ENSMUSG00000063415	Cyp26b1	CP26|P450RAI-2	cytochrome P450, family 26, subfamily b, polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-133186477-3	chr7	133186386	133186586	+	695.883362	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	58235.0	NR_046279	74970.0	Mm.491044	NR_046279	ENSMUSG00000109816	4930483O08Rik	-	RIKEN cDNA 4930483O08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-29263824-2	chr7	29263724	29263924	+	995.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011464, intron 1 of 6)	intron (NM_011464, intron 1 of 6)	-15357.0	NM_028179	72275.0	Mm.441142	NM_028179	ENSMUSG00000030587	2200002D01Rik	2010005J02Rik|H2RSP|IMUP|IMUP-1|IMUP-2	RIKEN cDNA 2200002D01 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-52097008-3	chr16	52096910	52097110	+	726.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033238, intron 3 of 17)	Lx3C|LINE|L1	65461.0	NM_001033238	208650.0	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-77047438-1	chr12	77047338	77047538	+	819.25	f0_balb.idr	Intergenic	MTD|LTR|ERVL-MaLR	-85190.0	NM_001146176	17187.0	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-83524757-2	chr13	83524655	83524855	+	573.0	f0_balb.idr|f1_balb.idr	promoter-TSS (NM_001347568)	promoter-TSS (NM_001347568)	12.0	NM_001347580	17260.0	Mm.24001	NM_025282	ENSMUSG00000005583	Mef2c	5430401D19Rik|9930028G15Rik|AV011172|Mef2	myocyte enhancer factor 2C	protein-coding	-1.21575676353841	-1.1882771616738	-1.1995328574972	-1.2087786211754	-1.21524488394202	-1.18583800543462	-1.19698481468061	-0.540595393272118	2.74438217975722	0.425994238664144	1
Merged-chr1-111372766-2	chr1	111372666	111372866	+	698.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2B|LINE|L1	-395173.0	NM_001081386	227485.0	Mm.322070	NM_001081386	ENSMUSG00000047216	Cdh19	-	cadherin 19, type 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-58273124-4	chr15	58273032	58273232	+	846.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51037.0	NM_177755	268807.0	Mm.124498	NM_177755	ENSMUSG00000022357	Klhl38	8230402K04Rik	kelch-like 38	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35175151-2	chr17	35175052	35175252	+	599.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019467, intron 1 of 7)	(TG)n|Simple_repeat|Simple_repeat	900.0	NM_019467	11629.0	Mm.10747	NM_019467	ENSMUSG00000024397	Aif1	AI607846|AIF-1|D17H6S50E|G1|Iba1	allograft inflammatory factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-49972387-2	chr16	49972287	49972487	+	681.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3_Mus|LINE|L1	-8073.0	NR_045001	628951.0	Mm.428032	NR_045001		Gm6936	-	predicted gene 6936	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-90212270-3	chr7	90212158	90212358	+	858.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53174.0	NM_029256	75338.0	Mm.487222	NM_029256	ENSMUSG00000030617	Ccdc83	4930549K11Rik|4930554C01Rik|4932423M01Rik	coiled-coil domain containing 83	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101298701-2	chr15	101298601	101298801	+	959.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5489.0	NR_033803	77717.0	Mm.391998	NR_033803	ENSMUSG00000075408	6030408B16Rik	AI225877	RIKEN cDNA 6030408B16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-35150475-4	chr15	35150360	35150560	+	823.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357821, intron 1 of 11)	Lx7|LINE|L1	5346.0	NM_001357821	56274.0	Mm.262330	NM_019635	ENSMUSG00000022329	Stk3	0610042I06Rik|MST|Mst2|Mst3|Ste20|mess1	serine/threonine kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91207544-2	chr2	91207444	91207644	+	589.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357067, intron 7 of 10)	intron (NM_001357067, intron 7 of 10)	4632.0	NM_007387	11432.0	Mm.45570	NM_007387	ENSMUSG00000002103	Acp2	Acp-2|LAP	acid phosphatase 2, lysosomal	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-98024574-4	chr3	98024482	98024682	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010928, intron 1 of 33)	intron (NM_010928, intron 1 of 33)	11044.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-41738159-4	chr4	41738061	41738261	+	781.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001286551)	TTS (NM_001286551)	3198.0	NM_001286540	18391.0	Mm.425181	NM_011014	ENSMUSG00000036078	Sigmar1	Oprs1|Sig1R|sigma1R	sigma non-opioid intracellular receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-36632350-4	chr16	36632257	36632457	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019388, intron 1 of 7)	L1MB3|LINE|L1	33720.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-153958063-4	chr4	153957966	153958166	+	979.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163019, intron 1 of 2)	intron (NM_001163019, intron 1 of 2)	829.0	NM_001163019	97159.0	Mm.7066	NM_175287	ENSMUSG00000047613	A430005L14Rik	C79672	RIKEN cDNA A430005L14 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-155831532-2	chr2	155831432	155831632	+	954.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_027788, exon 2 of 4)	exon (NM_027788, exon 2 of 4)	3322.0	NM_027788	71405.0	Mm.260918	NM_027788	ENSMUSG00000074647	Fam83c	5530400B04Rik	family with sequence similarity 83, member C	protein-coding	-0.961808289013217	-0.941143281918953	-0.953353259954851	-0.9565109400711	-0.961015840561242	-0.938024035002784	0.030272756003758	-0.955957512668286	3.38343409954699	0.275427317743097	1
Merged-chr18-36713013-3	chr18	36712954	36713154	+	571.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	13761.0	NM_009841	12475.0	Mm.3460	NM_009841	ENSMUSG00000051439	Cd14	-	CD14 antigen	protein-coding	2.8479656494987	1.3537839202621	2.87881410718145	1.2858530204372	2.87183548563978	2.07191983092301	2.53860716456384	2.0916160689887	0.222247925499378	0.823479138739397	0.998431161219273
Merged-chr4-145278020-2	chr4	145277920	145278120	+	688.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009401, intron 10 of 12)	intron (NM_009401, intron 10 of 12)	-31150.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-140159272-1	chr4	140159172	140159372	+	803.0	f1_c57bl6.idr	intron (NM_198610, intron 1 of 9)	RMER5|LTR|ERV1	16399.0	NR_153821	102636673.0	Mm.449180	NR_153821		Gm13029	Gm33676	predicted gene 13029	ncRNA	3.49396204753982	3.7333592100707	3.41849647188352	2.70610134096066	1.34094627623644	2.64872623135413	3.2961410586078	1.42089486441427	-1.62696254797418	0.0521374025349338	0.33430837464734
Merged-chr10-17947772-2	chr10	17947672	17947872	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001033432, exon 1 of 4)	exon (NM_001033432, exon 1 of 4)	295.0	NM_001033432	380629.0	Mm.276430	NM_001033432	ENSMUSG00000039879	Heca	Gm869|HDC|HDCL	hdc homolog, cell cycle regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-38939937-4	chr6	38939838	38940038	+	811.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 1 of 12)	RLTR17B_Mm|LTR|ERVK	20952.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-45046516-2	chr2	45046416	45046616	+	815.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355291, intron 2 of 9)	intron (NM_001355291, intron 2 of 9)	-23339.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-144044642-4	chr3	144044555	144044755	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	157677.0	NM_001161770	16911.0	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-24434812-2	chr16	24434712	24434912	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 1 of 12)	intron (NM_178665, intron 1 of 12)	-13279.0	NM_001145952	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4262981-4	chr19	4262857	4263057	+	914.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_105951)	TTS (NR_105951)	921.0	NR_105951	102465595.0		NR_105951	ENSMUSG00000099290	Mir6985	Gm27719|mmu-mir-6985	microRNA 6985	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16909123-2	chr7	16909023	16909223	+	663.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008967, exon 2 of 2)	3' UTR (NM_008967, exon 2 of 2)	2633.0	NM_008967	19222.0	Mm.287572	NM_008967	ENSMUSG00000043017	Ptgir	IP|PGI2	prostaglandin I receptor (IP)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-86363912-4	chr1	86363815	86364015	+	844.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015507, intron 1 of 1)	B2_Mm2|SINE|B2	4341.0	NR_015507	319336.0	Mm.389155	NR_015507	ENSMUSG00000073627	C130036L24Rik	-	RIKEN cDNA C130036L24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-20913879-2	chr5	20913779	20913979	+	997.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080977, intron 3 of 7)	intron (NM_001080977, intron 3 of 7)	31426.0	NM_177601	212090.0	Mm.347525	NM_177601	ENSMUSG00000045435	Tmem60	BC027828	transmembrane protein 60	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-76072775-4	chr14	76072664	76072864	+	910.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38051.0	NM_026177	67467.0	Mm.260767	NM_026177	ENSMUSG00000022008	Gpalpp1	1200011I18Rik|Kiaa1704	GPALPP motifs containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-93651197-3	chr14	93651095	93651295	+	727.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081377, intron 2 of 4)	intron (NM_001081377, intron 2 of 4)	239474.0	NM_001271800	211712.0	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding	0.692594440649711	0.42604107685111	0.910663266097098	1.42149705653509	0.820191993696473	0.428040218238025	0.616551219832213	0.411403395063303	-1.86171706906562	0.273084698123619	1
Merged-chr12-54823090-4	chr12	54822985	54823185	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27423.0	NM_026998	72183.0	Mm.28240	NM_026998	ENSMUSG00000005656	Snx6	2010006G21Rik|2610032J07Rik|2810425K19Rik|AU018928|C85963	sorting nexin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-90048476-1	chr7	90048376	90048576	+	753.0	f1_balb.idr	intron (NR_110364, intron 5 of 5)	intron (NR_110364, intron 5 of 5)	19317.0	NR_110364	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	2.38244772474848	3.07029123766191	1.56440149162705	3.30399947217053	2.40407697622297	3.61190895409644	3.56239336923801	3.32083148755077	0.948899876865599	0.204936002262454	0.692299163936211
Merged-chr13-12837345-2	chr13	12837245	12837445	+	633.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-37266.0	NM_011118	18812.0	Mm.457984	NM_011118	ENSMUSG00000056457	Prl2c3	Ghd1|MRP-2|MRP-3|Mrpplf3|PLF-2|PLF-3|Plf2|Prl2c4|mrp/plf3	prolactin family 2, subfamily c, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-3265508-2	chr16	3265408	3265608	+	551.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	-326890.0	NM_146860	258859.0	Mm.377723	NM_146860	ENSMUSG00000051003	Olfr161	MOR131-1|OR912-47M6	olfactory receptor 161	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81300740-2	chr10	81300640	81300840	+	839.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001293647, intron 1 of 17)	intron (NM_001293647, intron 1 of 17)	7777.0	NM_001146687	18717.0	Mm.24222	NM_008844	ENSMUSG00000034902	Pip5k1c	AI115456|AI835305|Pip5kIgamma	phosphatidylinositol-4-phosphate 5-kinase, type 1 gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167367555-4	chr2	167367444	167367644	+	958.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18366.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-24316985-4	chr2	24316872	24317072	+	730.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Rod|LINE|L1	-19888.0	NM_031167	16181.0	Mm.882	NM_031167	ENSMUSG00000026981	Il1rn	F630041P17Rik|IL-1ra	interleukin 1 receptor antagonist	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-67810564-2	chr17	67810464	67810664	+	607.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008480, intron 53 of 62)	intron (NM_008480, intron 53 of 62)	113299.0	NM_008480	16772.0	Mm.303386	NM_008480	ENSMUSG00000032796	Lama1	AA408497|Lama	laminin, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-7878346-2	chr17	7878246	7878446	+	666.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47654.0	NM_145968	72536.0	Mm.119680	NM_145968	ENSMUSG00000033450	Tagap	2610315E15Rik|TRD|Tcd-1|Tcd1|Tcd1a|tcs-1|tcs1	T cell activation Rho GTPase activating protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-89449478-2	chr6	89449378	89449578	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001167736, intron 4 of 6)	MTB_Mm|LTR|ERVL-MaLR	-86865.0	NM_008881	18844.0	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-57836307-2	chr9	57836207	57836407	+	671.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2073.0	NM_019689	56380.0	Mm.425588	NM_019689	ENSMUSG00000004661	Arid3b	Bdp|Dri2	AT rich interactive domain 3B (BRIGHT-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120902732-3	chr11	120902677	120902877	+	989.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027745, intron 6 of 18)	intron (NM_027745, intron 6 of 18)	30095.0	NM_027745	71276.0	Mm.275751	NM_027745	ENSMUSG00000048445	Ccdc57	4933434G05Rik	coiled-coil domain containing 57	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-34882403-2	chr6	34882303	34882503	+	596.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013366, intron 14 of 14)	intron (NM_001013366, intron 14 of 14)	-4338.0	NM_001135611	78412.0	Mm.248440	NM_199145	ENSMUSG00000046806	3110062M04Rik	AL023049|Cyren|Mri	RIKEN cDNA 3110062M04 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-70988766-2	chr17	70988666	70988866	+	742.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_023402, intron 1 of 3)	intron (NM_023402, intron 1 of 3)	1750.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-95248258-1	chr4	95248158	95248358	+	756.0	f0_balb.idr	Intergenic	Intergenic	-196036.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3706789-4	chr4	3706694	3706894	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 1 of 12)	intron (NM_001111096, intron 1 of 12)	-8170.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69401387-4	chr11	69401298	69401498	+	969.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001017426, intron 17 of 22)	intron (NM_001017426, intron 17 of 22)	-3164.0	NM_025915	67020.0	Mm.390406	NM_025915	ENSMUSG00000045377	Tmem88	2600017H02Rik	transmembrane protein 88	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-24851088-3	chr7	24850999	24851199	+	889.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	18592.0	NM_182785	232973.0	Mm.189648	NM_182785	ENSMUSG00000062732	Lypd4	4933400F01Rik	Ly6/Plaur domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-83053307-2	chr3	83053207	83053407	+	626.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2231.0	NM_016784	53317.0	Mm.286349	NM_016784	ENSMUSG00000027998	Plrg1	AA958940|C80566|Tango4	pleiotropic regulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124831476-2	chr6	124831376	124831576	+	803.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_013538, exon 3 of 6)	exon (NM_013538, exon 3 of 6)	1300.0	NM_013538	14793.0	Mm.285723	NM_013538	ENSMUSG00000023505	Cdca3	2410005A12Rik|C8|Grcc8|Tome-1	cell division cycle associated 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125037892-2	chr6	125037792	125037992	+	585.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001347452)	TTS (NM_001347452)	-1956.0	NM_133345	28019.0	Mm.262547	NM_133345	ENSMUSG00000030330	Ing4	D6Wsu147e|D6Xrf92|p29ING4	inhibitor of growth family, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-36476125-2	chr16	36476025	36476225	+	623.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-20733.0	NM_025288	20863.0	Mm.136573	NM_025288	ENSMUSG00000054905	Stfa3	Stf3	stefin A3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5672851-3	chr17	5672696	5672896	+	678.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 2 of 8)	intron (NM_146073, intron 2 of 8)	-125861.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-134595248-4	chr4	134595160	134595360	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207237, intron 2 of 11)	ORR1D2|LTR|ERVL-MaLR	-27409.0	NR_105829	102465216.0		NR_105829	ENSMUSG00000099289	Mir6403	Gm27992|mmu-mir-6403	microRNA 6403	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-75252475-2	chr1	75252375	75252575	+	809.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_008985, exon 17 of 23)	exon (NM_008985, exon 17 of 23)	11296.0	NM_001359281	19275.0	Mm.2902	NM_008985	ENSMUSG00000026204	Ptprn	IA-2|mIA-A|mKIAA4064	protein tyrosine phosphatase, receptor type, N	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-66112968-2	chr5	66112888	66113088	+	725.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_001127382, intron 2 of 7)	intron (NM_001127382, intron 2 of 7)	-14809.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	2.08014781536571	1.19857208603968	1.96068843734659	1.31063533147142	1.25714741617595	1.20615470162588	1.77210735566718	0.930791774109608	-1.23796892947158	0.308769113776588	0.809295017856989
Merged-chr3-88102910-4	chr3	88102799	88102999	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033484, intron 19 of 37)	intron (NM_001033484, intron 19 of 37)	20848.0	NM_001033484	404710.0	Mm.331133	NM_001033484	ENSMUSG00000028068	Iqgap3	AI593484|D030034H08	IQ motif containing GTPase activating protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-13221505-2	chr17	13221405	13221605	+	580.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013741, intron 1 of 2)	Lx5|LINE|L1	317.0	NM_013741	27263.0	Mm.371809	NM_013741	ENSMUSG00000073458	Smok2a	Smok2	sperm motility kinase 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-82805187-4	chr6	82805064	82805264	+	948.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER45B|DNA|hAT-Tip100	-30710.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-90212278-2	chr3	90212178	90212378	+	894.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_027015)	TTS (NM_027015)	1369.0	NM_001190258	100043813.0	Mm.270283	NM_001190258	ENSMUSG00000050621	Rps27rt	Gm9846|Rps27l2	ribosomal protein S27, retrogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-45926879-4	chr11	45926761	45926961	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18074.0	NM_028185	72290.0	Mm.249827	NM_028185	ENSMUSG00000044847	Lsm11	2210404M20Rik|AV079530	U7 snRNP-specific Sm-like protein LSM11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91353575-2	chr16	91353475	91353675	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-19208.0	NM_010509	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80668923-3	chr10	80668800	80669000	+	819.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021462, intron 10 of 13)	intron (NM_021462, intron 10 of 13)	7393.0	NM_021462	17347.0	Mm.42126	NM_021462	ENSMUSG00000020190	Mknk2	2010016G11Rik|Gprk7|Mnk2	MAP kinase-interacting serine/threonine kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-25484437-6	chr9	25484341	25484541	+	884.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 2 of 7)	intron (NM_026189, intron 2 of 7)	2844.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-25681318-2	chr15	25681218	25681418	+	895.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019472, intron 2 of 40)	intron (NM_019472, intron 2 of 40)	58768.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-95515553-2	chr12	95515453	95515653	+	638.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-176673.0	NM_201518	399558.0	Mm.341948	NM_201518	ENSMUSG00000047414	Flrt2	-	fibronectin leucine rich transmembrane protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-85928735-2	chr2	85928635	85928835	+	635.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	5465.0	NM_146584	258577.0	Mm.377575	NM_146584	ENSMUSG00000042863	Olfr1026	MOR196-4	olfactory receptor 1026	protein-coding	-0.790165559603664	-1.02489500587938	-1.03585533914581	-1.03984441570573	-0.903790072809063	-1.02251985593842	-0.719761904227202	-1.03952722498986	0.715062130495518	0.813535411749648	1
Merged-chr16-73760182-2	chr16	73760082	73760282	+	651.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	581885.0	NR_030464	751561.0		NR_030464	ENSMUSG00000104758	Mir691	Mirn691|mir-691|mmu-mir-691	microRNA 691	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-38363277-4	chr16	38363167	38363367	+	706.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022318, intron 1 of 3)	Charlie24|DNA|hAT-Charlie	1077.0	NM_022318	64082.0	Mm.390856	NM_022318	ENSMUSG00000022803	Popdc2	AV006127|Pop2	popeye domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-21685598-2	chr14	21685498	21685698	+	543.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013826, intron 3 of 3)	intron (NM_001013826, intron 3 of 3)	28978.0	NM_001013826	435391.0	Mm.295860	NM_001013826	ENSMUSG00000063821	Dupd1	EG435391	dual specificity phosphatase and pro isomerase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-26661540-2	chr2	26661440	26661640	+	740.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	9742.0	NM_010695	16821.0	Mm.123925	NM_010695	ENSMUSG00000026919	Lcn4	A630045M08Rik|Vnsp2	lipocalin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-88876467-4	chr15	88876351	88876551	+	914.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14257.0	NM_145478	223775.0	Mm.400129	NM_145478	ENSMUSG00000035828	Pim3	BC026639|Kid1	proviral integration site 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53440246-4	chr4	53440149	53440349	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159633)	promoter-TSS (NM_001159633)	-164.0	NM_001159633	100434.0	Mm.482207	NM_133891	ENSMUSG00000028412	Slc44a1	2210409B22Rik|4833416H08Rik|AW547365|CHTL1|CTL1|Cdw92	solute carrier family 44, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-10606329-3	chr17	10606228	10606428	+	585.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027032, intron 2 of 4)	intron (NM_027032, intron 2 of 4)	150112.0	NR_077238	319750.0	Mm.383485	NR_077237	ENSMUSG00000089633	A230009B12Rik	-	RIKEN cDNA A230009B12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-155571664-4	chr4	155571577	155571777	+	650.200012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355599, intron 1 of 10)	MLT1B|LTR|ERVL-MaLR	7862.0	NM_001355599	192185.0	Mm.28347	NM_138671	ENSMUSG00000029063	Nadk	4432404C02Rik|BC004012	NAD kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-35919245-3	chr16	35919126	35919326	+	900.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19244.0	NM_030253	80285.0	Mm.49074	NM_030253	ENSMUSG00000022906	Parp9	ARTD9|AW214463|BC003281|Bagl|Bal|PARP-9	poly (ADP-ribose) polymerase family, member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127528494-2	chr10	127528394	127528594	+	683.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183297, intron 1 of 1)	intron (NM_183297, intron 1 of 1)	-6050.0	NM_028230	108037.0	Mm.29890	NM_028230	ENSMUSG00000025403	Shmt2	2700043D08Rik|AA408223|AA986903|SHMT	serine hydroxymethyltransferase 2 (mitochondrial)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-64446245-4	chr1	64446152	64446352	+	920.9874880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-86552.0	NM_009952	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-147541862-2	chr5	147541742	147541942	+	616.833374	f0_balb.idr|f1_c57bl6.idr	intron (NM_028291, intron 16 of 18)	intron (NM_028291, intron 16 of 18)	111686.0	NM_028291	72587.0	Mm.320469	NM_028291	ENSMUSG00000029647	Pan3	2700050F09Rik|A430027N15Rik|AU014670	PAN3 poly(A) specific ribonuclease subunit	protein-coding	0.566297321424144	0.827371527263951	1.19271953233929	0.285882175497787	0.277041678858639	0.301875202304864	0.293858332989478	0.751467187392461	-2.07744860566206	0.272567289972132	1
Merged-chr5-142898543-2	chr5	142898443	142898643	+	631.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR35B_MM|LTR|ERVL	-3305.0	NM_001033312	231863.0	Mm.89753	NM_001033312	ENSMUSG00000066640	Fbxl18	AI427077|B130019G13Rik|C330021B20Rik	F-box and leucine-rich repeat protein 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129322948-2	chr2	129322808	129323008	+	726.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur3|SINE|Alu	-12936.0	NM_010554	16175.0	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	-1.84456824087626	-1.81369603968745	-1.82303204814395	-1.83070092346192	-1.84240106943552	-1.51787681909439	-1.82091858046888	-1.82932819844659	1.64481029852639	0.639921510788462	1
Merged-chr10-93689028-4	chr10	93688913	93689113	+	995.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021320, intron 3 of 9)	intron (NM_021320, intron 3 of 9)	-5691.0	NR_038017	100504069.0	Mm.391412	NR_038017	ENSMUSG00000085723	Gm15915	-	predicted gene 15915	ncRNA	4.98975750524806	3.907437020021	3.93164128947868	4.25423126752035	4.86658895674285	4.01927299938674	3.62388594813846	4.51478263766861	-0.0148676496236802	0.974460237651655	0.998431161219273
Merged-chr16-36929601-1	chr16	36929501	36929701	+	549.0	f1_balb.idr	intron (NM_030035, intron 20 of 21)	intron (NM_030035, intron 20 of 21)	-5382.0	NM_008225	15163.0	Mm.4091	NM_008225	ENSMUSG00000022831	Hcls1	AW213261|HS1	hematopoietic cell specific Lyn substrate 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105636374-4	chr8	105636270	105636470	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181322)	promoter-TSS (NM_181322)	-168.0	NM_181322	13018.0	Mm.269474	NM_181322	ENSMUSG00000005698	Ctcf	AW108038	CCCTC-binding factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-83153900-2	chr15	83153800	83154000	+	553.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_029787, exon 9 of 9)	3' UTR (NM_029787, exon 9 of 9)	4255.0	NR_004432	104307.0	Mm.471434	NR_004432	ENSMUSG00000065176	Rnu12	-	RNA U12, small nuclear	snRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-130476889-1	chr2	130476789	130476989	+	643.0	f0_balb.idr	intron (NM_001355161, intron 1 of 21)	RMER10A|LTR|ERVL	26611.0	NM_001355161	19262.0	Mm.224246	NM_008980	ENSMUSG00000027303	Ptpra	Ptpa|Ptpalpha|Rptpalpha|Rptra|Rptralpha	protein tyrosine phosphatase, receptor type, A	protein-coding	1.50897031391388	0.705818464392636	1.07960804533408	0.880890931714361	1.43959032465425	0.708786918127621	0.695459282287419	1.78236763000425	0.649340398480942	0.66578670444504	0.992380258859526
Merged-chr3-84773097-3	chr3	84772995	84773195	+	787.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42482.0	NM_001177773	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-116183189-4	chr9	116183095	116183295	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-5985.0	NR_152204	100043817.0	Mm.404276	NR_152204		Gm4668	-	predicted gene 4668	ncRNA	4.21887401959403	5.14021061888725	4.55111101780021	3.76775760772055	5.03396575326286	3.67713364997067	4.37696172752018	4.35525720129957	-0.0602152051286762	0.89445734556696	0.998431161219273
Merged-chr19-5426010-2	chr19	5425910	5426110	+	583.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001256515, exon 2 of 2)	exon (NM_001256515, exon 2 of 2)	866.0	NM_001256515	107242.0	Mm.329658	NM_134149	ENSMUSG00000047423	AI837181	Bles03|N28173	expressed sequence AI837181	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-98870073-1	chr14	98869973	98870173	+	679.0	f0_balb.idr	Intergenic	Intergenic	176063.0	NM_175245	76789.0	Mm.38912	NM_175245	ENSMUSG00000033186	Mzt1	2410129H14Rik|AI120158|Mozart1	mitotic spindle organizing protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-34715388-4	chr1	34715263	34715463	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-79153.0	NR_033627	241051.0	Mm.282827	NR_033627		AA619741	-	PHD finger protein 19 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81295068-2	chr10	81294968	81295168	+	614.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001293647, intron 1 of 17)	intron (NM_001293647, intron 1 of 17)	2105.0	NM_001146687	18717.0	Mm.24222	NM_008844	ENSMUSG00000034902	Pip5k1c	AI115456|AI835305|Pip5kIgamma	phosphatidylinositol-4-phosphate 5-kinase, type 1 gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-146776830-4	chr6	146776709	146776909	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001346666, exon 12 of 12)	3' UTR (NM_001346666, exon 12 of 12)	-28721.0	NM_001289680	272322.0	Mm.333500	NM_172309	ENSMUSG00000040187	Arntl2	4632430A05Rik|BMAL2|CLIF|MOP9|bHLHe6	aryl hydrocarbon receptor nuclear translocator-like 2	protein-coding	3.99683272323803	4.15411680921238	3.54959199402199	3.84375590210605	3.60936178595012	4.71983613445234	4.34317534477469	4.16669988316518	0.482175182876285	0.290562833771682	0.79539026179457
Merged-chr18-56364411-3	chr18	56364300	56364500	+	694.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-35940.0	NM_001360917	107022.0	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|Gramd2b|NS3TP2	GRAM domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-70994806-3	chr17	70994734	70994934	+	868.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026064, intron 3 of 3)	intron (NM_026064, intron 3 of 3)	3178.0	NM_001357820	67268.0	Mm.489605	NM_026064	ENSMUSG00000024048	Myl12a	2900073G15Rik|AI838292|C80200	myosin, light chain 12A, regulatory, non-sarcomeric	protein-coding	3.96406975575929	3.39157566005116	3.03645079313838	3.82889674033808	3.84247046552532	4.32940148750763	3.96383624136112	3.71368258322324	0.51973684438949	0.295500042663014	0.7986401962885
Merged-chr8-74972526-3	chr8	74972443	74972643	+	623.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-21107.0	NM_001316753	70823.0	Mm.261739	NM_178017	ENSMUSG00000034518	Hmgxb4	4733401K04Rik|AI316803|Hmgb2l1	HMG box domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-58482527-1	chr13	58482427	58482627	+	665.0	f1_balb.idr	Intergenic	AT_rich|Low_complexity|Low_complexity	-79184.0	NM_001301341	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	-1.52696403314699	-1.49523967873556	-1.5048333853602	-1.51271394162622	-1.52473704212565	-1.49316068248889	-1.50266158046844	-1.06847079017215	2.01069003169785	0.564432837776867	1
Merged-chr1-153518758-4	chr1	153518637	153518837	+	927.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028749, intron 7 of 11)	B3|SINE|B2	30977.0	NM_028749	74091.0	Mm.24887	NM_028749	ENSMUSG00000042684	Npl	0610033B02Rik	N-acetylneuraminate pyruvate lyase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-15121120-2	chr3	15121020	15121220	+	588.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4A|LINE|L1	149919.0	NR_040550	77127.0	Mm.195792	NR_040549	ENSMUSG00000098008	A930001A20Rik	-	RIKEN cDNA A930001A20 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-25473704-3	chr14	25473648	25473848	+	969.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	14563.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31020694-2	chr14	31020594	31020794	+	857.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359857, intron 1 of 30)	intron (NM_001359857, intron 1 of 30)	989.0	NM_001359856	66923.0	Mm.27913	NM_025847	ENSMUSG00000042323	Pbrm1	2610016F04Rik|AI507524|BAF180|Pb1	polybromo 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-75840266-2	chr13	75840178	75840378	+	1000.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_053108, intron 1 of 2)	intron (NM_053108, intron 1 of 2)	392.0	NM_053108	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	2.24467559807952	2.61755653536566	1.57197972733751	1.72614376778776	1.81129281691957	2.17275629509162	2.54881652674697	2.37746918392129	0.34315724193744	0.707382455173638	0.998431161219273
Merged-chr2-30393068-4	chr2	30392971	30393171	+	998.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020329, intron 1 of 7)	intron (NM_020329, intron 1 of 7)	817.0	NM_001290508	57170.0	Mm.285167	NM_020329	ENSMUSG00000026856	Dolpp1	0610011H20Rik|AB030189|LSFR2	dolichyl pyrophosphate phosphatase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-58932379-4	chr2	58932280	58932480	+	918.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362394, intron 10 of 13)	intron (NM_001362394, intron 10 of 13)	177196.0	NM_029692	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-56658242-2	chr13	56658142	56658342	+	624.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44768.0	NM_008541	17129.0	Mm.272920	NM_008541	ENSMUSG00000021540	Smad5	1110051M15Rik|AI451355|Dwf-C|Madh5|MusMLP	SMAD family member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-40738732-2	chr19	40738632	40738832	+	673.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001304721, intron 9 of 9)	intron (NM_001304721, intron 9 of 9)	78962.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46617303-4	chr8	46617189	46617389	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009810)	promoter-TSS (NM_009810)	-2.0	NM_001284409	12367.0	Mm.34405	NM_009810	ENSMUSG00000031628	Casp3	A830040C14Rik|AC-3|CASP-3|CC3|CPP-32|CPP32|Caspase-3|Lice|SCA-1|Yama|mldy	caspase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-104370607-4	chr8	104370543	104370743	+	981.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153582, intron 1 of 3)	L1MC4|LINE|L1	25164.0	NM_153582	97487.0	Mm.29658	NM_153582	ENSMUSG00000096188	Cmtm4	Cklfsf4|D19397|Gm9853	CKLF-like MARVEL transmembrane domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25790801-4	chr7	25790710	25790910	+	979.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2077.0	NM_001190975	26362.0	Mm.4128	NM_009465	ENSMUSG00000002602	Axl	AI323647|Ark|Tyro7|Ufo	AXL receptor tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114694640-2	chr11	114694540	114694740	+	548.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_053273, intron 3 of 13)	RLTR11A|LTR|ERVK	19172.0	NM_053273	117160.0	Mm.271934	NM_053273	ENSMUSG00000034714	Ttyh2	1110001A03Rik	tweety family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117722462-2	chr10	117722362	117722562	+	723.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11704.0	NM_001288586	17246.0	Mm.22670	NM_010786	ENSMUSG00000020184	Mdm2	1700007J15Rik|AA415488|Mdm-2	transformed mouse 3T3 cell double minute 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-30921678-6	chr5	30921543	30921743	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001349066)	promoter-TSS (NM_001349066)	84.0	NM_001310524	16548.0	Mm.22451	NM_008439	ENSMUSG00000029162	Khk	-	ketohexokinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-109234381-2	chr13	109234281	109234481	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011056, intron 3 of 16)	intron (NM_011056, intron 3 of 16)	-90363.0	NR_030644	100124489.0		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-45342601-3	chr4	45342509	45342709	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_153167, exon 1 of 7)	exon (NM_153167, exon 1 of 7)	508.0	NM_153167	242418.0	Mm.317668	NM_153167	ENSMUSG00000035572	Dcaf10	AA959934|Wdr32	DDB1 and CUL4 associated factor 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-50802320-3	chr15	50802185	50802385	+	879.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310485, intron 5 of 7)	intron (NM_001310485, intron 5 of 7)	86764.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3746038-2	chr4	3745938	3746138	+	851.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 6 of 12)	(TG)n|Simple_repeat|Simple_repeat	31074.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-4633502-2	chr7	4633402	4633602	+	876.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_172894, exon 19 of 24)	exon (NM_172894, exon 19 of 24)	-3020.0	NM_023440	68255.0	Mm.389784	NM_023440	ENSMUSG00000045282	Tmem86b	C330014O21Rik	transmembrane protein 86B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-109039974-3	chr8	109039884	109040084	+	704.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35238.0	NR_126329	628686.0	Mm.203332	NR_126329	ENSMUSG00000097393	D030068K23Rik	-	RIKEN cDNA D030068K23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76722777-4	chr15	76722672	76722872	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198119)	promoter-TSS (NM_198119)	-599.0	NM_198119	378937.0	Mm.289666	NM_198119	ENSMUSG00000033707	Lrrc24	6430402H13Rik	leucine rich repeat containing 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115247361-2	chr11	115247259	115247459	+	670.5	f0_balb.idr|f1_balb.idr	TTS (NM_001033393)	TTS (NM_001033393)	19884.0	NM_010350	14813.0	Mm.39090	NM_010350	ENSMUSG00000020734	Grin2c	GluN2C|NMDAR2C|NR2C	glutamate receptor, ionotropic, NMDA2C (epsilon 3)	protein-coding	0.497058751115634	0.984653448425953	0.544709019180068	0.363300278321233	0.836099634815437	0.874616093525272	0.549770937258242	0.364239270606964	0.311384014937919	0.85319730944249	1
Merged-chr4-43735680-3	chr4	43735579	43735779	+	609.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	5645.0	NM_001348108	71406.0	Mm.33063	NM_027789	ENSMUSG00000028475	Spaar	5430416O09Rik|AI481365|Spar	small regulatory polypeptide of amino acid response	protein-coding	0.481459729257744	0.531177299696881	0.515413035476651	0.731104164889421	0.484710902981367	1.18848252603765	1.6213683933965	1.94061561569789	4.2559794035387	0.0106949072648026	0.114288278722976
Merged-chr2-160648886-2	chr2	160648786	160648986	+	653.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009408, intron 2 of 20)	intron (NM_009408, intron 2 of 20)	2989.0	NM_009408	21969.0	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-132598705-2	chr2	132598605	132598805	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_033469, intron 1 of 3)	(TTCCC)n|Simple_repeat|Simple_repeat	509.0	NR_033469	767814.0	Mm.371752	NR_033468	ENSMUSG00000074783	AU019990	-	expressed sequence AU019990	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-97517988-4	chr15	97517880	97518080	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	187842.0	NM_028003	71919.0	Mm.12255	NM_028003	ENSMUSG00000022466	Rpap3	2310042P20Rik|D15Ertd682e	RNA polymerase II associated protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-82996938-4	chr6	82996872	82997072	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033079, intron 4 of 9)	intron (NM_033079, intron 4 of 9)	36499.0	NM_010070	13448.0	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	5.44446726335897	4.83703993925795	5.36309941133193	5.11086541559549	5.2780216118166	4.59703676936268	5.39865041750089	5.03313285008349	-0.116686784401101	0.713463691112901	0.998431161219273
Merged-chr2-35493248-2	chr2	35493148	35493348	+	615.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31799.0	NM_001145821	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-96537661-2	chr9	96537561	96537761	+	837.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58986.0	NM_001311135	19823.0	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-23033559-2	chr15	23033459	23033659	+	680.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	-2904.0	NM_001081299	320865.0	Mm.241965	NM_001081299	ENSMUSG00000040420	Cdh18	B230220E17Rik|Cdh14l|Tg(GFAP-APOE_i4)1Hol	cadherin 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-96918693-1	chr5	96918593	96918793	+	730.0	f1_balb.idr	Intergenic	RLTR20C1_MM|LTR|ERVK	-2579.0	NR_131152	666266.0	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	1.02159499558994	0.592186758149197	1.6763421063223	0.568268218411003	0.553062011016111	0.595165834841577	1.14627310038773	1.62448272808105	0.0305937342157226	0.985148191311858	0.998431161219273
Merged-chr5-92448897-2	chr5	92448797	92448997	+	615.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007644, intron 9 of 11)	intron (NM_007644, intron 9 of 11)	-9660.0	NR_105843	102466159.0		NR_105843	ENSMUSG00000099160	Mir6415	Gm27714|mmu-mir-6415	microRNA 6415	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-93477036-4	chr10	93476936	93477136	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008517, intron 14 of 18)	intron (NM_008517, intron 14 of 18)	-11732.0	NM_010401	15109.0	Mm.13000	NM_010401	ENSMUSG00000020017	Hal	Hsd|his|histidase	histidine ammonia lyase	protein-coding	4.58891426292693	3.20806736805344	4.58600103404465	5.12551092050561	5.25439512851617	5.08782162237847	5.15821503290034	5.61026707996978	0.896893978907541	0.02154487287815	0.188042229480149
Merged-chr10-34279409-4	chr10	34279290	34279490	+	798.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2800.0	NM_009433	22110.0	Mm.20445	NM_009433	ENSMUSG00000047514	Tspyl1	Tspyl	testis-specific protein, Y-encoded-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-8713602-3	chr13	8713502	8713702	+	765.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001289530, exon 7 of 10)	exon (NM_001289530, exon 7 of 10)	157442.0	NM_001039389	207615.0	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-62602206-5	chr10	62602087	62602287	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_019553, exon 1 of 15)	exon (NM_019553, exon 1 of 15)	111.0	NM_019553	56200.0	Mm.413275	NM_019553	ENSMUSG00000020075	Ddx21	AI255159|AL022742|D10Ertd645e|D10Wsu42e	DEAD (Asp-Glu-Ala-Asp) box polypeptide 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-23717732-4	chr13	23717622	23717822	+	966.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVB4_1B-I_MM-int|LTR|ERVK	-6868.0	NM_010424	15216.0	Mm.2681	NM_010424	ENSMUSG00000006611	Hfe	MR2	hemochromatosis	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-34034995-3	chr3	34034901	34035101	+	868.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113189, intron 1 of 16)	intron (NM_001113189, intron 1 of 16)	14922.0	NM_001113189	14359.0	Mm.259021	NM_008053	ENSMUSG00000027680	Fxr1	1110050J02Rik|9530073J07Rik|AI851072|Fxr1h|Fxr1p	fragile X mental retardation gene 1, autosomal homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-8632333-2	chr15	8632233	8632433	+	686.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	78474.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	0.724528495714129	0.778095364031909	1.60361774487029	1.83736337381088	0.728015748292018	0.781874135564557	1.61901193059462	1.84892221931279	0.0335077160601767	0.982479387001447	0.998431161219273
Merged-chr14-75022708-2	chr14	75022608	75022808	+	860.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198642, intron 1 of 13)	intron (NM_198642, intron 1 of 13)	6681.0	NM_198642	271221.0	Mm.320280	NM_198642	ENSMUSG00000034959	Rubcnl	5031414D18Rik|Gm744|Gm911|Kiaa0226l	RUN and cysteine rich domain containing beclin 1 interacting protein like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-143625275-4	chr7	143625170	143625370	+	912.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175649, intron 1 of 7)	RMER4A|LTR|ERVK	2575.0	NM_175649	244237.0	Mm.247498	NM_175649	ENSMUSG00000045362	Tnfrsf26	Tnfrh3|Tnfrsf24	tumor necrosis factor receptor superfamily, member 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-46799174-2	chr18	46799074	46799274	+	584.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ERV3-16A3_I-int|LTR|ERVL	-50865.0	NM_029008	74574.0	Mm.26379	NM_029008	ENSMUSG00000024481	Lvrn	4833403I15Rik|APQ|Aqpep	laeverin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21514979-2	chr9	21514879	21515079	+	733.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4745.0	NR_136911	17083.0	Mm.196618	NM_010744	ENSMUSG00000032180	Tmed1	Il1rl1l|Ly84l|St2l	transmembrane p24 trafficking protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55926216-2	chr19	55926116	55926316	+	555.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001331146, intron 14 of 14)	intron (NM_001331146, intron 14 of 14)	30895.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118792477-1	chr9	118792377	118792577	+	1000.0	f1_c57bl6.idr	intron (NM_001113514, intron 3 of 13)	intron (NM_001113514, intron 3 of 13)	80785.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0.44946472789881	0.0714652233152693	0.662665004290897	0.0599827354955767	0.0528648589072626	0.0729193553937022	0.877479596476729	0.0608598875387243	-0.0346014038289211	0.987285424234984	1
Merged-chr12-100115373-2	chr12	100115273	100115473	+	627.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008947, intron 3 of 9)	intron (NM_008947, intron 3 of 9)	3042.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-148444744-4	chr4	148444714	148444914	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027873)	promoter-TSS (NM_027873)	-63.0	NM_027873	71707.0	Mm.292503	NM_027873	ENSMUSG00000047719	Ubiad1	1200002M06Rik|AI426463|AW320947|Tere1	UbiA prenyltransferase domain containing 1	protein-coding	4.29484548300717	3.65132007755623	4.94420461002204	3.9539540503525	4.10908540149376	4.61688580739925	2.61427807505371	3.61425693940329	-0.509855552792209	0.34438661215815	0.845630114924368
Merged-chr4-53516481-2	chr4	53516381	53516581	+	728.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133891, intron 3 of 15)	intron (NM_133891, intron 3 of 15)	76068.0	NM_133891	100434.0	Mm.482207	NM_133891	ENSMUSG00000028412	Slc44a1	2210409B22Rik|4833416H08Rik|AW547365|CHTL1|CTL1|Cdw92	solute carrier family 44, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-120112636-4	chr6	120112532	120112732	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016718, intron 1 of 3)	intron (NM_016718, intron 1 of 3)	19252.0	NM_016718	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-88274891-4	chr8	88274790	88274990	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007406, intron 1 of 27)	intron (NM_007406, intron 1 of 27)	2487.0	NM_007406	11513.0	Mm.288206	NM_007406	ENSMUSG00000031659	Adcy7	AA407758	adenylate cyclase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-94921865-2	chr8	94921765	94921965	+	767.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1829.0	NM_001033468	382045.0	Mm.334726	NM_001033468	ENSMUSG00000061577	Adgrg5	Gm1109|Gpr114|PGR27	adhesion G protein-coupled receptor G5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-173680438-2	chr2	173680338	173680538	+	747.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_024436, intron 2 of 6)	intron (NM_024436, intron 2 of 6)	20593.0	NM_024436	19334.0	Mm.275304	NM_024436	ENSMUSG00000027519	Rab22a	3732413A17Rik|AI662177|AW319644|AW550514|E130120E14Rik|Rab22	RAB22A, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-91874852-2	chr1	91874752	91874952	+	993.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	73391.0	NM_007855	13345.0	Mm.9474	NM_007855	ENSMUSG00000007805	Twist2	Dermo1|bHLHa39	twist basic helix-loop-helix transcription factor 2	protein-coding	2.1554539435535	1.32846801932479	2.45103673425904	2.02940681385473	2.90619405626833	1.33569391532303	2.36199283379346	2.57713424495048	0.83220970192028	0.400486920462977	0.885232511369712
Merged-chr2-155533637-2	chr2	155533545	155533745	+	911.25	f0_balb.idr|f1_balb.idr	intron (NM_019811, intron 2 of 17)	Charlie2a|DNA|hAT-Charlie	15602.0	NM_019811	60525.0	Mm.255026	NM_019811	ENSMUSG00000027605	Acss2	1110017C11Rik|ACAS|Acas1|Acas2|AceCS1|Acs1	acyl-CoA synthetase short-chain family member 2	protein-coding	2.8345206339277	1.58444429074263	2.44972989546372	1.75572616350964	4.11267431029805	3.66246545229912	3.73917944719544	3.50083087853805	2.5608949497335	0.000214847310638702	0.00569696321114631
Merged-chr13-119617403-3	chr13	119617311	119617511	+	780.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6408.0	NM_020279	56838.0	Mm.143745	NM_020279	ENSMUSG00000074715	Ccl28	CCK1|MEC|Scya28	chemokine (C-C motif) ligand 28	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-87098820-4	chr1	87098760	87098960	+	835.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081082, exon 11 of 11)	exon (NM_001081082, exon 11 of 11)	2746.0	NM_001081082	76768.0	Mm.58068	NM_001081082	ENSMUSG00000079440	Alpi	2010001C14Rik|Akp6|gIAP	alkaline phosphatase, intestinal	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-115848211-4	chr4	115848080	115848280	+	969.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285487, intron 2 of 14)	intron (NM_001285487, intron 2 of 14)	8982.0	NM_001355174	17346.0	Mm.209327	NM_021461	ENSMUSG00000028708	Mknk1	2410048M24Rik|Mnk1	MAP kinase-interacting serine/threonine kinase 1	protein-coding	1.65955387409485	1.25068866549963	1.80984191529592	0.978650910274891	2.1530446400581	1.01606214832742	1.56729661836751	1.86870849650335	0.804671368596257	0.512746679432406	0.945638053458749
Merged-chr16-87717104-2	chr16	87717004	87717204	+	609.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007520, intron 2 of 4)	intron (NM_007520, intron 2 of 4)	18150.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-18693054-1	chr8	18692954	18693154	+	743.0	f1_balb.idr	intron (NM_007426, intron 8 of 8)	intron (NM_007426, intron 8 of 8)	48508.0	NM_007426	11601.0	Mm.439874	NM_007426	ENSMUSG00000031465	Angpt2	Agpt2|Ang-2|Ang2	angiopoietin 2	protein-coding	-1.5061220274826	-1.47360709383584	-1.48343987814663	-1.49151681994238	-1.50383953926072	-1.47147628845725	-1.0170701920923	-1.49007105122263	2.15652851593596	0.535359572134045	1
Merged-chr15-99392316-1	chr15	99392216	99392416	+	788.333313	f1_c57bl6.idr	promoter-TSS (NM_026669)	promoter-TSS (NM_026669)	-631.0	NM_026669	110213.0	Mm.16769	NM_026669	ENSMUSG00000023010	Tmbim6	5031406P05Rik|Bi1|Tegt	transmembrane BAX inhibitor motif containing 6	protein-coding	3.2400683708016	3.37982388009435	3.83197414847829	3.67343600912636	3.03269139181684	2.96386127043018	3.53711607634719	1.62177534642121	-0.960667006821213	0.150010032096109	0.602215156732918
Merged-chr7-44359500-2	chr7	44359400	44359600	+	822.666626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_027049)	TTS (NM_027049)	15530.0	NM_027049	69349.0	Mm.358922	NM_027049	ENSMUSG00000008028	1700008O03Rik	-	RIKEN cDNA 1700008O03 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127642510-3	chr10	127642414	127642614	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009284)	promoter-TSS (NM_009284)	-472.0	NM_009284	20852.0	Mm.121721	NM_009284	ENSMUSG00000002147	Stat6	-	signal transducer and activator of transcription 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-4297099-3	chr11	4296967	4297167	+	816.694458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30271.0	NM_001039537	16878.0	Mm.4964	NM_008501	ENSMUSG00000034394	Lif	-	leukemia inhibitory factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-19958373-4	chr10	19958278	19958478	+	978.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008580, intron 1 of 29)	intron (NM_008580, intron 1 of 29)	23852.0	NM_008580	26408.0	Mm.6595	NM_008580	ENSMUSG00000071369	Map3k5	7420452D20Rik|ASK|ASK1|MAPKKK5|Mekk5	mitogen-activated protein kinase kinase kinase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-59043547-2	chr19	59043447	59043647	+	686.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114312, intron 3 of 16)	intron (NM_001114312, intron 3 of 16)	32522.0	NM_175172	71653.0	Mm.37338	NM_175172	ENSMUSG00000041362	Shtn1	4930506M07Rik|Shootin1|mKIAA1598	shootin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-61374571-4	chr9	61374392	61374592	+	756.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083928, intron 2 of 19)	intron (NM_001083928, intron 2 of 19)	2126.0	NM_001083927	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-66807769-4	chr10	66807662	66807862	+	945.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	112622.0	NR_138560	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-13819256-4	chr16	13819173	13819373	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010946)	promoter-TSS (NM_010946)	22.0	NM_001346111	18203.0	Mm.380410	NM_010946	ENSMUSG00000022681	Ntan1	PNAA|PNAD	N-terminal Asn amidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-75021538-3	chr15	75021438	75021638	+	987.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23507.0	NM_010738	110454.0	Mm.425949	NM_010738	ENSMUSG00000075602	Ly6a	Ly-6A.2|Ly-6A/E|Ly-6E.1|Sca-1|Sca1|TAP	lymphocyte antigen 6 complex, locus A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-88298164-4	chr8	88298071	88298271	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037724, intron 3 of 27)	intron (NM_001037724, intron 3 of 27)	3967.0	NM_001037724	11513.0	Mm.288206	NM_007406	ENSMUSG00000031659	Adcy7	AA407758	adenylate cyclase 7	protein-coding	1.39166585168872	1.7203700796716	1.30918989424276	1.61481970283482	2.06082457521878	2.33009065749285	2.05337746586867	1.06259591433528	1.33823227105357	0.226576942397264	0.719679709199359
Merged-chr9-7837922-1	chr9	7837822	7838022	+	1000.0	f0_c57.idr	promoter-TSS (NM_007465)	promoter-TSS (NM_007465)	-865.0	NM_007465	11797.0	Mm.335659	NM_007465	ENSMUSG00000057367	Birc2	AW146227|Api1|Api2|Birc3|C-IAP1|C330006D17Rik|HIAP1|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF48|cIAP1|cIAP2|mcIAP1	baculoviral IAP repeat-containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-113777362-3	chr11	113777273	113777473	+	726.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25558.0	NM_001163346	56699.0	Mm.293378	NM_020006	ENSMUSG00000041598	Cdc42ep4	1500041M20Rik|Borg4|CEP4	CDC42 effector protein (Rho GTPase binding) 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-36499592-2	chr15	36499492	36499692	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2801.0	NM_175134	68839.0	Mm.396537	NM_175134	ENSMUSG00000048307	Ankrd46	1110054N06Rik|AI314978|AI987733	ankyrin repeat domain 46	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-71453267-4	chr2	71453167	71453367	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025633)	promoter-TSS (NM_025633)	-71.0	NM_025633	66559.0	Mm.152796	NM_025633	ENSMUSG00000041921	Metap1d	2310066F24Rik|3110033D18Rik|AV117938|MAP 1D|Map1d|MetAP 1D|Metapl1	methionyl aminopeptidase type 1D (mitochondrial)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-101664166-4	chr13	101664055	101664255	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28475.0	NM_001024955	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-25221852-3	chr5	25221754	25221954	+	848.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1018.0	NM_144908	231050.0	Mm.246718	NM_144908	ENSMUSG00000038072	Galnt11	A430075I06Rik|AI648252|E430002F06Rik	polypeptide N-acetylgalactosaminyltransferase 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-63424644-4	chr10	63424538	63424738	+	986.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-5460.0	NM_177612	216033.0	Mm.444692	NM_177612	ENSMUSG00000060843	Ctnna3	4930429L08Rik|4933408A16|Catna3|Vr22	catenin (cadherin associated protein), alpha 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-84349134-2	chr17	84349034	84349234	+	686.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183021, intron 26 of 37)	intron (NM_183021, intron 26 of 37)	117074.0	NM_183021	240174.0	Mm.246767	NM_177826	ENSMUSG00000024251	Thada	6530405K19|A930021O22|AU019899|BC052885|GITA	thyroid adenoma associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59083582-2	chr15	59083482	59083682	+	586.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1556.0	NM_144800	211401.0	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128494714-2	chr10	128494614	128494814	+	891.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010860)	promoter-TSS (NM_010860)	-828.0	NM_010860	17904.0	Mm.337074	NM_010860	ENSMUSG00000090841	Myl6	ESMLC|LC17|LC17-GI|MLC-3|MLC1SM|Myln	myosin, light polypeptide 6, alkali, smooth muscle and non-muscle	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-148548720-3	chr5	148548591	148548791	+	856.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359199, intron 3 of 6)	intron (NM_001359199, intron 3 of 6)	2982.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-98110062-2	chr4	98109962	98110162	+	621.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010905, intron 10 of 10)	intron (NM_010905, intron 10 of 10)	273203.0	NM_053157	94043.0	Mm.331719	NM_053157	ENSMUSG00000028563	Tm2d1	2310026L18Rik|AA990549|Bbp	TM2 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69778149-4	chr11	69778061	69778261	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029348, exon 4 of 4)	exon (NM_029348, exon 4 of 4)	12249.0	NM_029348	75580.0	Mm.426361	NM_029348	ENSMUSG00000018750	Zbtb4	2310026P19Rik|9230111I22Rik|mKIAA1538	zinc finger and BTB domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-20803708-4	chr14	20803550	20803750	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9411.0	NR_153779	102631887.0	Mm.122292	NR_153779	ENSMUSG00000114241	Gm30108	-	predicted gene, 30108	ncRNA	4.75665744866872	4.60501133487008	4.16312236836375	3.93381583749837	2.93763176815036	3.66071130729305	3.62773473550168	3.51300603472581	-1.32560865273868	0.00528435517472069	0.0696211860025244
Merged-chr6-116439711-3	chr6	116439617	116439817	+	896.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009662, intron 3 of 13)	intron (NM_009662, intron 3 of 13)	21461.0	NM_009662	11689.0	Mm.41072	NM_009662	ENSMUSG00000025701	Alox5	5-LO|5-LOX|5LO|5LX|AI850497|F730011J02	arachidonate 5-lipoxygenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-82920532-3	chr18	82920431	82920631	+	879.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033307)	promoter-TSS (NR_033307)	29.0	NR_033307	75853.0	Mm.420737	NR_033307		4930592I03Rik	-	RIKEN cDNA 4930592I03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-14959288-4	chr10	14959196	14959396	+	984.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	199007.0	NM_008703	18101.0	Mm.487342	NM_008703	ENSMUSG00000019865	Nmbr	BB182387	neuromedin B receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141409074-4	chr7	141408953	141409153	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172116, intron 7 of 7)	intron (NM_172116, intron 7 of 7)	5072.0	NM_172116	213350.0	Mm.290953	NM_172116	ENSMUSG00000051007	Gatd1	BC023835|D230016J19Rik|Pddc1	glutamine amidotransferase like class 1 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-85123629-7	chr11	85123545	85123745	+	884.4761960000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029934, intron 1 of 33)	B1_Mur1|SINE|Alu	16310.0	NM_001029934	237898.0	Mm.178524	NM_001029934	ENSMUSG00000000804	Usp32	2900074J03Rik|6430526O11Rik|AW045245	ubiquitin specific peptidase 32	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-61321868-4	chr3	61321787	61321987	+	976.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42620.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-52605481-4	chr12	52605353	52605553	+	738.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3131.0	NR_045910	73278.0	Mm.396209	NR_045910	ENSMUSG00000100315	1700031P21Rik	-	RIKEN cDNA 1700031P21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-35575073-4	chr5	35574953	35575153	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030208)	promoter-TSS (NM_030208)	17.0	NM_030208	78890.0	Mm.98522	NM_030208	ENSMUSG00000029097	Trmt44	2310079F23Rik|Mettl19	tRNA methyltransferase 44	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-4235356-2	chr11	4235256	4235456	+	604.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1429.0	NM_001013365	18413.0	Mm.131422	NM_001013365	ENSMUSG00000058755	Osm	OncoM	oncostatin M	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-142926539-4	chr5	142926440	142926640	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19786.0	NM_007393	11461.0	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-41572864-2	chr13	41572764	41572964	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1G1|LTR|ERVL-MaLR	-33352.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-13954475-4	chr13	13954371	13954571	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001362404)	promoter-TSS (NM_001362404)	-203.0	NM_001362404	97884.0	Mm.21686	NM_178640	ENSMUSG00000039242	B3galnt2	A930105D20Rik|C80633|D230016N13Rik	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191391512-4	chr1	191391434	191391634	+	864.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144880, intron 1 of 12)	intron (NM_144880, intron 1 of 12)	5507.0	NM_144880	226849.0	Mm.205569	NM_144880	ENSMUSG00000026626	Ppp2r5a	PR61alpha	protein phosphatase 2, regulatory subunit B', alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-44469852-4	chr13	44469663	44469863	+	885.3250119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30036.0	NR_045489	69491.0	Mm.392410	NR_045489	ENSMUSG00000098144	1700029N11Rik	-	RIKEN cDNA 1700029N11 gene	ncRNA	0.388951493965518	0.450002677652114	0.778016852932645	0.648681176780234	0.392765353578223	0.281558852621858	0.276700431602987	0.654063836694019	-1.24134225259604	0.482735311570259	1
Merged-chr19-32595801-4	chr19	32595690	32595890	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001201470)	promoter-TSS (NM_001201470)	75.0	NM_001201470	23972.0	Mm.203916	NM_011864	ENSMUSG00000024899	Papss2	1810018P12Rik|AI159688|AtpsU2|Atpsk2|Sk2|bm	3'-phosphoadenosine 5'-phosphosulfate synthase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-69090071-2	chr14	69089971	69090171	+	648.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	60782.0	NM_009285	20855.0	Mm.20911	NM_009285	ENSMUSG00000014813	Stc1	Stc	stanniocalcin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-63978218-3	chr15	63978121	63978321	+	887.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144846, intron 1 of 11)	MTC|LTR|ERVL-MaLR	19845.0	NM_001360035	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115822319-2	chr11	115822219	115822419	+	574.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029557, intron 10 of 10)	intron (NM_029557, intron 10 of 10)	-1739.0	NM_145438	217325.0	Mm.290450	NM_145438	ENSMUSG00000020782	Llgl2	9130006H11Rik|Llglh2	LLGL2 scribble cell polarity complex component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-109525774-4	chr12	109525672	109525872	+	702.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15224.0	NR_027652	17263.0	Mm.289645	NM_144513	ENSMUSG00000021268	Meg3	2900016C05Rik|3110050O07Rik|6330408G06Rik|AI425946|AW108224|D12Bwg1266e|Gtl2|R74756|R75394	maternally expressed 3	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-25497390-2	chr2	25497290	25497490	+	822.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3116.0	NM_027062	69379.0	Mm.24596	NM_027062	ENSMUSG00000015083	C8g	-	complement component 8, gamma polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-39414140-2	chr18	39414040	39414240	+	600.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008173, exon 8 of 8)	3' UTR (NM_008173, exon 8 of 8)	73105.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-100738383-2	chr15	100738283	100738483	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5646.0	NR_045782	619313.0	Mm.123436	NR_045781	ENSMUSG00000116504	I730030J21Rik	-	RIKEN cDNA I730030J21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-60973768-3	chr1	60973655	60973855	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4159.0	NM_017480	54167.0	Mm.42044	NM_017480	ENSMUSG00000026009	Icos	AILIM|CCLP|CRP-1|H4|Ly115	inducible T cell co-stimulator	protein-coding	1.19031294837151	1.13808931946131	1.29437479114296	0.852401271057491	1.47036305548928	1.1460112257174	2.41284483020462	1.67523075434589	2.26396478284902	0.0668912936723028	0.387979500964769
Merged-chr4-16170452-3	chr4	16170434	16170634	+	826.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045765, intron 1 of 6)	RLTR16|LTR|ERVK	6424.0	NR_045765	100415915.0	Mm.387180	NR_045765	ENSMUSG00000085112	A530072M11Rik	-	RIKEN cDNA gene A530072M11	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-73756904-4	chr16	73756797	73756997	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6B|LTR|ERVK	585170.0	NR_030464	751561.0		NR_030464	ENSMUSG00000104758	Mir691	Mirn691|mir-691|mmu-mir-691	microRNA 691	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-54925805-6	chr1	54925724	54925924	+	955.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081433, intron 1 of 27)	CpG	563.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-66243657-2	chr14	66243557	66243757	+	637.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 1 of 30)	B4A|SINE|B4	-29833.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	0.103556086736826	-0.0237261904239506	-0.0290839484752327	0.500200688535504	-0.0390664966692694	-0.0225187673355881	0.153245343636354	0.692519962920261	0.574576876273466	0.787849944191657	1
Merged-chr13-9176205-2	chr13	9176105	9176305	+	835.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	82324.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-161072478-1	chr1	161072378	161072578	+	612.0	f1_c57bl6.idr	intron (NM_001159930, intron 1 of 4)	intron (NM_001159930, intron 1 of 4)	1711.0	NR_131029	70454.0	Mm.248212	NM_027429	ENSMUSG00000026708	Cenpl	2610300B10Rik|AW121806|AW550697|CENP-L	centromere protein L	protein-coding	0.360317675057148	0.0867471231532428	0.698401587060667	0.0740731660256511	1.06426043570955	0.0883471926151532	0.0811928323825901	0.0750438309095403	0.515824085326531	0.808745163653032	1
Merged-chr5-147725813-4	chr5	147725735	147725935	+	762.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010228, exon 1 of 30)	5' UTR (NM_010228, exon 1 of 30)	153.0	NM_010228	14254.0	Mm.389712	NM_010228	ENSMUSG00000029648	Flt1	AI323757|Flt-1|VEGFR-1|VEGFR1|sFlt1	FMS-like tyrosine kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-7185440-2	chr9	7185340	7185540	+	610.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029775, intron 1 of 7)	intron (NM_029775, intron 1 of 7)	935.0	NM_029775	76863.0	Mm.27293	NM_029775	ENSMUSG00000032002	Dcun1d5	3110001A18Rik|4833420K19Rik|AW060460|D430047L21Rik	DCN1, defective in cullin neddylation 1, domain containing 5 (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-27436710-3	chr16	27436658	27436858	+	896.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025615, intron 7 of 9)	intron (NM_001025615, intron 7 of 9)	47802.0	NM_001289436	67501.0	Mm.258985	NM_026202	ENSMUSG00000038127	Ccdc50	C3orf6	coiled-coil domain containing 50	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-45652067-6	chr14	45651956	45652156	+	761.138916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176845, intron 1 of 12)	intron (NM_176845, intron 1 of 12)	5997.0	NR_039593	100628600.0		NR_039593	ENSMUSG00000093167	Mir5131	mmu-mir-5131|mu-mir-5131	microRNA 5131	ncRNA	1.45610161478344	1.76112902416293	1.81530848396582	1.76248885537241	1.58206538698843	1.06129743329736	1.83013048938948	1.22864390641194	-0.806431433758108	0.479895217226607	0.928518022987937
Merged-chr14-16575548-5	chr14	16575478	16575678	+	610.900024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011243)	promoter-TSS (NM_011243)	-102.0	NM_001289762	218772.0	Mm.259318	NM_011243	ENSMUSG00000017491	Rarb	A830025K23|Hap|Nr1b2	retinoic acid receptor, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-34685053-1	chr19	34684953	34685153	+	812.5	f0_balb.idr	intron (NM_172838, intron 2 of 6)	intron (NM_172838, intron 2 of 6)	44164.0	NM_008331	15957.0	Mm.439751	NM_008331	ENSMUSG00000034459	Ifit1	ISG56|Ifi56|P56	interferon-induced protein with tetratricopeptide repeats 1	protein-coding	2.94249994629939	2.96907112848644	3.87239066991789	3.10933090687938	3.49668984729013	1.7539368698567	3.64629744394462	4.13038219290623	0.344189043782669	0.617219826275915	0.977517868708383
Merged-chr6-140765836-2	chr6	140765736	140765936	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR31D_MM|LTR|ERVK	138951.0	NM_001309436	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-35906099-4	chr13	35906067	35906267	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145938, intron 1 of 7)	CpG	180.0	NM_145938	208366.0	Mm.35545	NM_145938	ENSMUSG00000021418	Rpp40	D8Bwg1265e|Rnasep1	ribonuclease P 40 subunit	protein-coding	5.16577987881397	4.2244488811974	3.84488861648874	4.62635981724328	5.52030260300294	4.79231812991782	3.96021475422238	5.31726269279998	0.558842770084946	0.197501792771926	0.679718702856214
Merged-chr8-128701150-3	chr8	128701046	128701246	+	723.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010578, intron 1 of 15)	Lx3_Mus|LINE|L1	15492.0	NM_010578	16412.0	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-79524362-2	chr11	79524262	79524462	+	608.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001077496)	promoter-TSS (NM_001077496)	-600.0	NM_001077496	216984.0	Mm.439665	NM_001077496	ENSMUSG00000093938	Evi2b	Evi-2|Evi2	ecotropic viral integration site 2b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-52619167-2	chr3	52619067	52619267	+	546.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	102203.0	NR_153344	102631981.0	Mm.394225	NR_153344		Gm30173	-	predicted gene, 30173	ncRNA	-1.13146769101922	-1.10460487238646	-1.11735372523027	-1.12713099301154	-1.13082009585647	-0.300663969208598	-1.11446766439333	-1.12595147812057	3.06518455575839	0.353555291099784	1
Merged-chr4-115939920-2	chr4	115939820	115940020	+	811.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_130865)	promoter-TSS (NM_130865)	6.0	NM_001025567	140477.0	Mm.213206	NM_130865	ENSMUSG00000028707	Dmbx1	Atx|Cdmx|Mbx|Otx3	diencephalon/mesencephalon homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-13642806-1	chr8	13642706	13642906	+	584.0	f1_c57bl6.idr	intron (NM_009025, intron 1 of 23)	intron (NM_009025, intron 1 of 23)	34781.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	0.0344080835934562	0.0541827637991998	0.848621867473996	0.707022381262894	0.0356519058442747	0.0556310071836055	0.0491627042704531	0.370818132883121	-2.43396319080035	0.271400509429372	1
Merged-chr1-93072619-4	chr1	93072530	93072730	+	951.716675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001294150, intron 8 of 46)	intron (NM_001294150, intron 8 of 46)	9850.0	NM_001294150	16560.0	Mm.276408	NM_008440	ENSMUSG00000014602	Kif1a	ATSV|C630002N23Rik|Gm1626|Kns1	kinesin family member 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30604497-2	chr2	30604397	30604597	+	621.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030137, intron 1 of 1)	B4A|SINE|B4	9453.0	NM_030137	78617.0	Mm.40413	NM_030137	ENSMUSG00000047363	Cstad	9530039B02Rik	CSA-conditional, T cell activation-dependent protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-5098185-2	chr7	5098085	5098285	+	751.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001252454)	TTS (NM_001252454)	17950.0	NM_001252454	13854.0	Mm.3091	NM_010147	ENSMUSG00000035203	Epn1	AA269831|Ibp1	epsin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-95451108-4	chr1	95451029	95451229	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	137501.0	NM_026321	67698.0	Mm.272705	NM_026321	ENSMUSG00000051185	Fam174a	2310044D20Rik|Fam174|Naa6|Tmem157	family with sequence similarity 174, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-92743538-3	chr7	92743442	92743642	+	765.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029494, intron 1 of 4)	intron (NM_029494, intron 1 of 4)	1828.0	NM_029494	75985.0	Mm.323004	NM_029494	ENSMUSG00000030643	Rab30	5033421K01Rik|AI323892|Rsb30	RAB30, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-17858515-2	chr5	17858415	17858615	+	966.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159558, intron 1 of 15)	RMER1B|Other|Other	-8723.0	NM_001159556	12491.0	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 molecule	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115184085-5	chr11	115184018	115184218	+	754.799988	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025400, intron 4 of 6)	B4|SINE|B4	3198.0	NM_025400	66176.0	Mm.86823	NM_025400	ENSMUSG00000015542	Nat9	1110028N05Rik	N-acetyltransferase 9 (GCN5-related, putative)	protein-coding	0.433066409245306	-0.0124741796342777	-0.0175582464430426	0.593999339283031	0.443054523685038	-0.0113271022954511	-0.0164375629583924	-0.0207916549448522	-1.23458356847557	0.588461851318626	1
Merged-chr9-95856003-2	chr9	95855903	95856103	+	921.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271569, intron 1 of 1)	intron (NM_001271569, intron 1 of 1)	1514.0	NR_073361	73410.0	Mm.443314	NM_028533	ENSMUSG00000096655	1700065D16Rik	-	RIKEN cDNA 1700065D16 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-116597327-2	chr3	116597271	116597471	+	641.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030016, intron 1 of 11)	URR1B|DNA|hAT-Charlie	2413.0	NM_001289571	72776.0	Mm.440836	NM_028349	ENSMUSG00000027959	Sass6	2810453L12Rik	SAS-6 centriolar assembly protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-93334027-1	chr2	93333927	93334127	+	699.0	f0_balb.idr	intron (NM_183180, intron 1 of 9)	CpG	460.0	NM_183180	241556.0	Mm.274159	NM_183180	ENSMUSG00000027217	Tspan18	2610042G18Rik|6720430O15|BB226562	tetraspanin 18	protein-coding	-1.84280077443174	-1.81293422041935	-1.67985321171519	-1.82938517824444	-1.69859129640937	-1.81097697164803	-1.81992149039197	-1.82805716908941	0.037684011990387	0.991491645451152	1
Merged-chr1-153526840-3	chr1	153526734	153526934	+	607.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028749, intron 5 of 11)	intron (NM_028749, intron 5 of 11)	22880.0	NM_028749	74091.0	Mm.24887	NM_028749	ENSMUSG00000042684	Npl	0610033B02Rik	N-acetylneuraminate pyruvate lyase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-160363351-3	chr2	160363251	160363451	+	973.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010658)	TTS (NM_010658)	3714.0	NM_010658	16658.0	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167844194-4	chr2	167844100	167844300	+	945.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-88127.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-67514694-2	chr15	67514594	67514794	+	627.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	287925.0	NR_045140	69334.0	Mm.63770	NR_045140	ENSMUSG00000102069	1700012I11Rik	-	RIKEN cDNA 1700012I11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-86657364-4	chr4	86657251	86657451	+	894.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007408, exon 8 of 8)	exon (NM_007408, exon 8 of 8)	12708.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43508295-2	chr4	43508195	43508395	+	727.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013377, intron 1 of 11)	intron (NM_001013377, intron 1 of 11)	452.0	NM_001013377	230098.0	Mm.331567	NM_001013377	ENSMUSG00000051517	Arhgef39	E130306D19Rik	Rho guanine nucleotide exchange factor (GEF) 39	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-54810246-2	chr6	54810146	54810346	+	678.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6670.0	NM_199143	387524.0	Mm.286149	NM_199143	ENSMUSG00000058446	Znrf2	1190002C14Rik|AU044205|D6Ertd365e	zinc and ring finger 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-94627475-2	chr16	94627375	94627575	+	690.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113389, intron 2 of 11)	intron (NM_001113389, intron 2 of 11)	16056.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-76397799-2	chr11	76397699	76397899	+	703.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008750, intron 1 of 7)	intron (NM_008750, intron 1 of 7)	1342.0	NM_008750	18230.0	Mm.27915	NM_008750	ENSMUSG00000020844	Nxn	l11Jus13	nucleoredoxin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6398642-2	chr19	6398542	6398742	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_011224)	TTS (NM_011224)	-1941.0	NM_011242	19395.0	Mm.77017	NM_011242	ENSMUSG00000032946	Rasgrp2	CDC25L|Caldaggef1	RAS, guanyl releasing protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-94970437-2	chr11	94970337	94970537	+	883.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009161, intron 7 of 10)	intron (NM_009161, intron 7 of 10)	2844.0	NM_018792	54388.0	Mm.30482	NM_018792	ENSMUSG00000038994	Hils1	H1.9|TISP64	histone H1-like protein in spermatids 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-45122699-1	chr16	45122599	45122799	+	787.0	f0_balb.idr	intron (NM_026439, intron 5 of 7)	intron (NM_026439, intron 5 of 7)	28688.0	NM_026439	67896.0	Mm.181074	NM_026439	ENSMUSG00000022665	Ccdc80	2610001E17Rik|DRO1|Ssg1|Urb	coiled-coil domain containing 80	protein-coding	2.26262169376739	2.40016479195402	3.2154309324969	1.44185644084436	2.60390600239873	2.81610596272269	3.24000192486854	2.63621658255057	0.691200134443551	0.398863154155828	0.885012968233564
Merged-chr16-77282215-2	chr16	77282115	77282315	+	551.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-47113.0	NR_015543	77994.0	Mm.394688	NR_015543	ENSMUSG00000090386	Mir99ahg	2810055G20Rik|D730043B02Rik	Mir99a and Mirlet7c-1 host gene (non-protein coding)	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-136415351-4	chr1	136415322	136415522	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_024328)	promoter-TSS (NR_024328)	97.0	NR_024328	320054.0	Mm.208000	NR_024328	ENSMUSG00000097403	9230116N13Rik	-	RIKEN cDNA 9230116N13 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-31763468-4	chr2	31763373	31763573	+	996.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001283045, intron 1 of 10)	intron (NM_001283045, intron 1 of 10)	3300.0	NM_001283045	11350.0	Mm.1318	NM_009594	ENSMUSG00000026842	Abl1	AI325092|Abl|E430008G22Rik|c-Abl	c-abl oncogene 1, non-receptor tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-28421723-4	chr6	28421630	28421830	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028900)	promoter-TSS (NM_028900)	-6.0	NM_028900	74375.0	Mm.332950	NM_028900	ENSMUSG00000029708	Gcc1	4932417P04Rik	golgi coiled coil 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-36953252-6	chr8	36953163	36953363	+	693.694458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001194940)	promoter-TSS (NM_001194940)	-821.0	NM_001194940	50768.0	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-95513048-1	chr9	95512948	95513148	+	826.0	f1_c57bl6.idr	Intergenic	Intergenic	-1052.0	NM_001357974	67958.0	Mm.292742	NM_026476	ENSMUSG00000032407	U2surp	2610101N10Rik|AU023006|Sr140	U2 snRNP-associated SURP domain containing	protein-coding	3.21804140890253	4.01714602474137	1.31605235861962	1.56269459767926	2.66424353992426	3.115164403985	2.42763761489073	1.5723801144117	-0.768641698135536	0.419758414173317	0.899498409000238
Merged-chr8-34963233-1	chr8	34963133	34963333	+	604.666687	f0_balb.idr	intron (NM_175091, intron 1 of 26)	intron (NM_175091, intron 1 of 26)	2457.0	NM_175091	21951.0	Mm.88364	NM_175091	ENSMUSG00000031529	Tnks	4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	protein-coding	2.15726516614819	3.58289167803448	2.36373973770876	2.89964328029334	2.32103452262288	1.52388623687541	2.91023150781665	4.01789036486317	0.263275019148266	0.755644873941606	0.998431161219273
Merged-chr11-62556381-1	chr11	62556281	62556481	+	812.666687	f0_balb.idr	Intergenic	URR1B|DNA|hAT-Charlie	4650.0	NM_001313984	22187.0	Mm.371592	NM_011664	ENSMUSG00000019505	Ubb	AL033289|Rps27a|Uba52|Ubb2|Ubc	ubiquitin B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-58161128-4	chr2	58161046	58161246	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1024.0	NM_139200	227929.0	Mm.273905	NM_139200	ENSMUSG00000026832	Cytip	A130053M09Rik|AI462064|C80816|Cbp|Cybr|Pscdbp	cytohesin 1 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-25407375-4	chr15	25407258	25407458	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027395, intron 1 of 1)	intron (NM_027395, intron 1 of 1)	6406.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-147943124-2	chr4	147943024	147943224	+	940.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_029841, intron 1 of 2)	intron (NM_029841, intron 1 of 2)	2229.0	NM_029841	77034.0	Mm.183076	NM_029841	ENSMUSG00000044496	2510039O18Rik	Kiaa2013	RIKEN cDNA 2510039O18 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55889628-2	chr19	55889528	55889728	+	579.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_138565, intron 4 of 15)	intron (NR_138565, intron 4 of 15)	-5693.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-27617126-4	chr3	27617038	27617238	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356953, intron 4 of 26)	MER126|DNA|DNA	-32143.0	NR_037275	100526525.0		NR_037275	ENSMUSG00000092695	Mir3092	mir-3092|mmu-mir-3092	microRNA 3092	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-80134320-1	chr12	80134220	80134420	+	642.0	f1_c57bl6.idr	Intergenic	Intergenic	-1476.0	NR_033514	69548.0	Mm.269712	NR_033514		2310015A10Rik	5330419I17Rik	RIKEN cDNA 2310015A10 gene	ncRNA	2.30546122916553	2.15640566091905	1.09248746959801	1.30021200466611	2.32586394229257	1.12164513766205	1.85353125614532	1.79385377771251	0.0483852151513738	0.966898209810708	0.998431161219273
Merged-chr5-90908541-3	chr5	90908512	90908712	+	848.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME3D|LINE|L1	4713.0	NM_009140	20310.0	Mm.4979	NM_009140	ENSMUSG00000058427	Cxcl2	CINC-2a|GROb|Gro2|MIP-2|MIP-2a|Mgsa-b|Mip2|Scyb|Scyb2	chemokine (C-X-C motif) ligand 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-83724412-4	chr2	83724317	83724517	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008402)	promoter-TSS (NM_008402)	20.0	NM_008402	16410.0	Mm.227	NM_008402	ENSMUSG00000027087	Itgav	1110004F14Rik|2610028E01Rik|CD51|D430040G12Rik	integrin alpha V	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88142658-1	chr3	88142558	88142758	+	1000.0	f0_c57.idr	5' UTR (NM_133665, exon 1 of 11)	5' UTR (NM_133665, exon 1 of 11)	286.0	NM_133665	17261.0	Mm.28184	NM_133665	ENSMUSG00000001419	Mef2d	C80750	myocyte enhancer factor 2D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-79379973-1	chr4	79379873	79380073	+	675.0	f1_balb.idr	Intergenic	L1_Mus3|LINE|L1	785926.0	NR_131142	623726.0		NR_131142		A430085M09Rik	EG623726	RIKEN cDNA A430085M09 gene	ncRNA	-1.58994551673671	-1.55912852307891	-1.56844783632235	-1.57610299769523	-1.18549093183599	-1.55710898902261	-1.56633814807757	-1.57473272746952	1.78703309985663	0.610309988231842	1
Merged-chr5-67845420-4	chr5	67845335	67845535	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038999, intron 1 of 36)	intron (NM_001038999, intron 1 of 36)	1996.0	NM_009727	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141558389-4	chr7	141558285	141558485	+	966.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-3795.0	NM_001357068	11772.0	Mm.253090	NM_007459	ENSMUSG00000002957	Ap2a2	2410074K14Rik|AF006990|AW146353|Adtab|C78001|L25	adaptor-related protein complex 2, alpha 2 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75452318-2	chr11	75452218	75452418	+	672.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_138950, exon 1 of 10)	exon (NM_138950, exon 1 of 10)	2399.0	NM_138950	192652.0	Mm.340378	NM_138950	ENSMUSG00000045374	Wdr81	BC054822|Gm883|mFLJ00182|nur5	WD repeat domain 81	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-51486820-1	chr10	51486720	51486920	+	918.0	f1_balb.idr	TTS (NM_001291893)	TTS (NM_001291893)	-4078.0	NM_001291894	14728.0	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100817472-2	chr11	100817372	100817572	+	774.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113563, intron 1 of 18)	intron (NM_001113563, intron 1 of 18)	5098.0	NM_011489	20851.0	Mm.34064	NM_011489	ENSMUSG00000020919	Stat5b	-	signal transducer and activator of transcription 5B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-12222825-6	chr12	12222734	12222934	+	892.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39305.0	NM_029758	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	1.66952931340006	1.01928253954104	1.92818461124879	2.12912749981451	1.57589304638999	1.26694816228894	1.83597062339038	0.98805606827859	-0.93265619302945	0.444355522733906	0.912265842646861
Merged-chr2-102821975-1	chr2	102821875	102822075	+	1000.0	f1_balb.idr	intron (NM_001039150, intron 13 of 13)	intron (NM_001039150, intron 13 of 13)	-75215.0	NR_153853	102637542.0	Mm.371582	NR_153852		Gm13872	-	predicted gene 13872	ncRNA	1.50636917645714	0.885966050451536	0.871010259356203	1.69585205457645	1.52014029030456	1.60673722275176	0.874333833295972	1.70578571796632	0.585841690123386	0.670970029376883	0.99367117984352
Merged-chr18-65697791-4	chr18	65697694	65697894	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177028)	promoter-TSS (NM_177028)	-474.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-71707942-1	chr12	71707842	71708042	+	639.0	f1_c57bl6.idr	Intergenic	Intergenic	-123126.0	NM_026102	208846.0	Mm.87417	NM_026102	ENSMUSG00000034574	Daam1	-	dishevelled associated activator of morphogenesis 1	protein-coding	-1.14149542847138	-0.33100028091332	-1.12720875772362	-1.13728867753953	-1.14086750656251	-1.11193125150289	-1.12436624874263	-1.1356767669541	-2.98824766641611	0.369648585513947	1
Merged-chr6-108246511-4	chr6	108246411	108246611	+	881.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 4 of 61)	intron (NM_010585, intron 4 of 61)	33415.0	NM_010585	16438.0	Mm.227912	NM_010585	ENSMUSG00000030102	Itpr1	D6Pas2|Gm10429|IP3R 1|IP3R1|InsP3R|Ip3r|Itpr-1|P400|Pcp-1|Pcp1|insP3R1|opt|wblo	inositol 1,4,5-trisphosphate receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-21781653-3	chr19	21781576	21781776	+	626.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031997, intron 2 of 24)	intron (NM_031997, intron 2 of 24)	3336.0	NM_031997	83921.0	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-39436296-4	chr10	39436191	39436391	+	796.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122892, intron 2 of 12)	intron (NM_001122892, intron 2 of 12)	66492.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-38356547-2	chr2	38356447	38356647	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290646, intron 3 of 4)	intron (NM_001290646, intron 3 of 4)	5239.0	NM_010710	16870.0	Mm.142856	NM_010710	ENSMUSG00000000247	Lhx2	LH2A|Lh-2|Lim2|ap|apterous	LIM homeobox protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-104408079-4	chr9	104407956	104408156	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18057.0	NR_035516	100316725.0		NR_035516	ENSMUSG00000089406	Mir2136	mmu-mir-2136	microRNA 2136	ncRNA	5.19439470820687	4.68851948279677	5.39773712155145	5.0955697153639	4.77322251771508	4.49014092096433	4.0697434337299	5.0541708276853	-0.56625929573652	0.109714493785887	0.519067230458625
Merged-chr7-64360235-4	chr7	64360151	64360351	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177893, intron 8 of 13)	intron (NM_177893, intron 8 of 13)	13844.0	NM_177893	330554.0	Mm.236510	NM_177893	ENSMUSG00000033458	Fan1	6030441H18Rik|Mtmr15|mFAN1	FANCD2/FANCI-associated nuclease 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-61466981-2	chr10	61466881	61467081	+	933.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8852.0	NM_153542	216011.0	Mm.136116	NM_153542	ENSMUSG00000037151	Lrrc20	BC036304	leucine rich repeat containing 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-88584637-4	chr10	88584517	88584717	+	957.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175418, intron 2 of 28)	intron (NM_175418, intron 2 of 28)	20535.0	NM_001252372	109272.0	Mm.147208	NM_175418	ENSMUSG00000020061	Mybpc1	8030451F13Rik	myosin binding protein C, slow-type	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46738627-2	chr8	46738527	46738727	+	846.7000119999999	f1_balb.idr|f1_c57bl6.idr	intron (NR_045750, intron 1 of 2)	intron (NR_045750, intron 1 of 2)	888.0	NR_045750	100503498.0	Mm.187358	NR_045750	ENSMUSG00000097534	Gm16675	-	predicted gene, 16675	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80033543-4	chr7	80033437	80033637	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175433, intron 1 of 4)	ID4|SINE|ID	7309.0	NM_175433	209225.0	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	0.565895217064397	0.563755832531498	0.531416099921353	0.222679632909467	0.470151427540291	0.233555141067472	0.22807164973909	0.728733180392172	-0.287927748800765	0.876779544216387	1
Merged-chr4-120978468-4	chr4	120978375	120978575	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133716, intron 4 of 9)	intron (NM_133716, intron 4 of 9)	-5153.0	NR_105982	102465614.0		NR_105982	ENSMUSG00000106436	Mir7015	mmu-mir-7015	microRNA 7015	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191151252-3	chr1	191151138	191151338	+	812.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	13579.0	NM_001109759	619288.0	Mm.61148	NM_001109759	ENSMUSG00000091017	Fam71a	4933417M04Rik|GARI-L4	family with sequence similarity 71, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-80257802-4	chr18	80257719	80257919	+	997.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025861, intron 2 of 5)	intron (NM_025861, intron 2 of 5)	1513.0	NM_025861	66943.0	Mm.29247	NM_025861	ENSMUSG00000034006	Pqlc1	2310009N05Rik|4933425L21Rik|5730564E11Rik|C78974	PQ loop repeat containing 1	protein-coding	1.90875639527971	2.42017100579603	2.3402612957792	2.14852813357534	1.92343619174532	2.43770715942587	2.68179668300711	2.91356681278434	0.744689924356956	0.365811520424837	0.861036332257394
Merged-chr5-8081332-4	chr5	8081219	8081419	+	872.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310439, intron 29 of 29)	intron (NM_001310439, intron 29 of 29)	24777.0	NM_001080974	109552.0	Mm.96211	NM_025618	ENSMUSG00000003161	Sri	2210417O06Rik|2900070H08Rik|Sor	sorcin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21220673-4	chr9	21220563	21220763	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18669.0	NM_016679	50868.0	Mm.248266	NM_016679	ENSMUSG00000003308	Keap1	INRF2|mKIAA0132	kelch-like ECH-associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-53914187-4	chr10	53914075	53914275	+	931.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008548, intron 11 of 12)	intron (NM_008548, intron 11 of 12)	161621.0	NM_008548	17155.0	Mm.117294	NM_008548	ENSMUSG00000003746	Man1a	Man1a1|PCR1	mannosidase 1, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-60948396-4	chr2	60948281	60948481	+	865.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	14823.0	NM_020296	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-19091529-2	chr3	19091429	19091629	+	667.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	71566.0	NM_028840	74252.0	Mm.200383	NM_028840	ENSMUSG00000027599	Armc1	2310016N05Rik|2900046P06Rik|3110009G21Rik|AA409258|AW048872|Arcp|C330014L16Rik	armadillo repeat containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171531518-2	chr1	171531418	171531618	+	978.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_010584, exon 4 of 8)	exon (NM_010584, exon 4 of 8)	3776.0	NM_010584	16429.0	Mm.247426	NM_010584	ENSMUSG00000038209	Itln1	IntL|Itln|Itln2|Itln3|Itln5|Itlna|Lfr	intelectin 1 (galactofuranose binding)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-72766882-2	chr9	72766782	72766982	+	792.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40392.0	NM_175485	235472.0	Mm.31696	NM_175485	ENSMUSG00000036030	Prtg	A230098A12Rik|Igdcc5	protogenin	protein-coding	-2.18375600819439	-2.15556918946382	-2.16409311609999	-2.17109492323169	-2.18177734563694	-2.01960173909294	-2.16216348594872	-2.16984160310277	0.759018020146679	0.829933115115583	1
Merged-chr11-99024942-2	chr11	99024842	99025042	+	730.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011623)	promoter-TSS (NM_011623)	-753.0	NM_011623	21973.0	Mm.4237	NM_011623	ENSMUSG00000020914	Top2a	Top-2	topoisomerase (DNA) II alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-31806505-4	chr13	31806391	31806591	+	876.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008592)	promoter-TSS (NM_008592)	-155.0	NM_008592	17300.0	Mm.12949	NM_008592	ENSMUSG00000050295	Foxc1	FREAC3|Fkh1|Mf1|Mf4|ch|fkh-1|frkhda	forkhead box C1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-8709743-4	chr4	8709648	8709848	+	782.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001277149, intron 1 of 37)	intron (NM_001277149, intron 1 of 37)	19342.0	NM_001277149	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-93471597-4	chr10	93471413	93471613	+	878.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008517, intron 10 of 18)	intron (NM_008517, intron 10 of 18)	-17255.0	NM_010401	15109.0	Mm.13000	NM_010401	ENSMUSG00000020017	Hal	Hsd|his|histidase	histidine ammonia lyase	protein-coding	1.2774113427309	1.1456683659931	1.21708053266356	0.789276830953212	0.76074102042824	0.635012669908441	0.62559126331652	1.18225014028648	-1.48952148850632	0.323674309464074	0.826332612263711
Merged-chr1-85111789-3	chr1	85111691	85111891	+	654.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1938.0	NM_213615	381287.0	Mm.487565	NM_213615	ENSMUSG00000089844	A530032D15Rik	Gm1888	RIKEN cDNA A530032D15Rik gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-136828350-4	chr6	136828268	136828468	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178776)	promoter-TSS (NM_178776)	-152.0	NM_021714	60321.0	Mm.141197	NM_021714	ENSMUSG00000030216	Wbp11	2510026P17Rik|D6Wsu113e|Npwbp|SIPP1	WW domain binding protein 11	protein-coding	7.4501205664132	7.78557191739085	7.15165572535891	7.53427729578863	7.49696043661562	7.63350281107414	7.09990834830795	7.29292123218705	-0.105988376338876	0.539454423381437	0.954403851908463
Merged-chr6-49214083-5	chr6	49213980	49214180	+	746.033325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023670, intron 1 of 14)	CpG	874.0	NM_023670	140488.0	Mm.281018	NM_023670	ENSMUSG00000029814	Igf2bp3	2610101N11Rik|AA522010|AL022933|AU045931|IMP-3|IMP3|Koc13|Neilsen|mimp3	insulin-like growth factor 2 mRNA binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-33965775-3	chr6	33965680	33965880	+	783.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009148, intron 17 of 17)	intron (NM_009148, intron 17 of 17)	-63668.0	NM_028886	74354.0	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141214019-2	chr7	141213919	141214119	+	707.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028050)	promoter-TSS (NM_028050)	61.0	NM_001347565	72000.0	Mm.334314	NM_028050	ENSMUSG00000025500	Lmntd2	1600016N20Rik	lamin tail domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-29681863-3	chr5	29681764	29681964	+	617.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16_Mm|LTR|ERVK	-54034.0	NM_001359198	23950.0	Mm.290110	NM_011847	ENSMUSG00000029131	Dnajb6	HSJ-2|Mrj|mDj4	DnaJ heat shock protein family (Hsp40) member B6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-8992898-3	chr8	8992759	8992959	+	719.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	139429.0	NR_045854	71249.0	Mm.158635	NR_045854	ENSMUSG00000108848	4933430N04Rik	-	RIKEN cDNA 4933430N04 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-48278552-2	chr17	48278434	48278634	+	767.833374	f0_balb.idr|f1_balb.idr	Intergenic	RMER6A|LTR|ERVK	14239.0	NM_001163796	224840.0	Mm.131234	NM_172623	ENSMUSG00000051682	Treml4	5031403H21Rik|BB137214|IDCP1|TLT-4|TLT4|Treml3	triggering receptor expressed on myeloid cells-like 4	protein-coding	0.323321490198126	0.209059612426605	0.502754665217008	0.478028872960628	0.719265615510865	0.21022275370837	0.369964555237629	0.482364180738899	0.585657716464602	0.742962563666456	1
Merged-chr1-23827273-3	chr1	23827171	23827371	+	696.944458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172124, intron 2 of 3)	intron (NM_172124, intron 2 of 3)	65345.0	NM_172124	280645.0	Mm.471661	NM_172124	ENSMUSG00000026156	B3gat2	GlcAT-S|Glcats	beta-1,3-glucuronyltransferase 2 (glucuronosyltransferase S)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-23903497-2	chr18	23903397	23903597	+	610.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51191.0	NM_027007	69256.0	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-113800839-4	chr9	113800752	113800952	+	814.604126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286603, intron 1 of 4)	intron (NM_001286603, intron 1 of 4)	7522.0	NM_001286603	76499.0	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	0.432181720035151	0.300877716355843	0.293035196859014	0.957343935173634	0.79483004466319	0.302638172111171	1.11443567064449	0.288012584968807	0.802674242322509	0.670736834899908	1
Merged-chr2-127397919-4	chr2	127397827	127398027	+	939.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27272.0	NM_001081089	215456.0	Mm.440454	NM_001081089	ENSMUSG00000046338	Gpat2	A530057A03Rik|Gm116|xGPAT1	glycerol-3-phosphate acyltransferase 2, mitochondrial	protein-coding	2.56349484378979	1.8448304171201	1.12338734467188	2.49564073193156	1.48358924402563	1.16042081901139	1.61166075859215	2.78721371076647	-0.430049545920998	0.702084519507955	0.998431161219273
Merged-chr19-6941536-4	chr19	6941502	6941702	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007522)	promoter-TSS (NM_007522)	-95.0	NM_001177362	107173.0	Mm.276555	NM_207220	ENSMUSG00000024958	Gpr137	AI428855	G protein-coupled receptor 137	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-36712718-2	chr16	36712618	36712818	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285788, intron 3 of 7)	MIR|SINE|MIR	18740.0	NM_001285791	106347.0	Mm.17807	NM_134109	ENSMUSG00000022900	Ildr1	AU041483|AU044638	immunoglobulin-like domain containing receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-139209048-4	chr4	139208953	139209153	+	998.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	14942.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	3.66228954708344	4.34052070492795	4.53847683866351	4.51399701131197	4.54054988449789	4.66564371209694	4.46713761173537	5.74544353799679	0.832231282880602	0.0514333265106751	0.331060649932983
Merged-chr11-29172844-4	chr11	29172752	29172952	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134034)	promoter-TSS (NM_134034)	-55.0	NM_134034	104570.0	Mm.276386	NM_134034	ENSMUSG00000020463	Ppp4r3b	AW011752|AW557776|Smek2|mKIAA1387	protein phosphatase 4 regulatory subunit 3B	protein-coding	5.13365437635677	5.27155790641132	4.50734833225919	3.89264331590827	4.63498019998949	4.73746446518541	4.37414098126948	4.72828206164306	-0.220154250915757	0.577337110370928	0.96585843058813
Merged-chr5-122089084-4	chr5	122088991	122089191	+	896.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11860.0	NM_010861	17906.0	Mm.1529	NM_010861	ENSMUSG00000013936	Myl2	MLC-2|MLC-2s/v|MLC-2v|Mlc2v|Mylpc	myosin, light polypeptide 2, regulatory, cardiac, slow	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80560788-3	chr10	80560670	80560870	+	788.155579	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025852, intron 1 of 14)	intron (NM_025852, intron 1 of 14)	790.0	NM_025852	66932.0	Mm.1116	NM_025852	ENSMUSG00000047417	Rexo1	1700021P10Rik|2610511M11Rik|AW050347|EloA-BP1|Rex1|Tceb3bp1	REX1, RNA exonuclease 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-80667951-2	chr12	80667851	80668051	+	816.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026244, intron 3 of 6)	RLTR14|LTR|ERV1	23736.0	NM_026244	328133.0	Mm.238279	NM_026244	ENSMUSG00000048833	Slc39a9	2010002A02Rik|2610511I23Rik|4833420E20Rik|AW209151	solute carrier family 39 (zinc transporter), member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-53895011-4	chr19	53894912	53895112	+	899.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011050, intron 1 of 11)	intron (NM_011050, intron 1 of 11)	2781.0	NM_011050	18569.0	Mm.1605	NM_011050	ENSMUSG00000024975	Pdcd4	D19Ucla1|Ma3|Tis	programmed cell death 4	protein-coding	1.57628495539216	2.37044786783323	1.10139169693831	0.844889030874928	1.02905784447279	0.885502060846096	1.74895598916956	1.68601698205743	-0.690353156387439	0.595569599094452	0.971139446851758
Merged-chr5-124489879-2	chr5	124489779	124489979	+	744.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029532, intron 1 of 1)	intron (NM_029532, intron 1 of 1)	6724.0	NM_029532	76167.0	Mm.156035	NM_029532	ENSMUSG00000029402	Snrnp35	6330548G22Rik	small nuclear ribonucleoprotein 35 (U11/U12)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-75892224-3	chr2	75892140	75892340	+	719.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172666, intron 13 of 19)	intron (NM_172666, intron 13 of 19)	46222.0	NM_028235	72421.0	Mm.275109	NM_028235	ENSMUSG00000075273	Ttc30b	2510042P03Rik|Tcc30b	tetratricopeptide repeat domain 30B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-95844903-4	chr11	95844802	95845002	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023121, intron 2 of 3)	intron (NM_023121, intron 2 of 3)	1657.0	NM_001284397	14710.0	Mm.46299	NM_023121	ENSMUSG00000038811	Gngt2	AV096488	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-34527435-2	chr5	34527335	34527535	+	830.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011893, intron 1 of 12)	intron (NM_011893, intron 1 of 12)	1651.0	NM_011893	24055.0	Mm.5012	NM_011893	ENSMUSG00000054520	Sh3bp2	3BP2	SH3-domain binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-84779489-1	chr5	84779389	84779589	+	838.0	f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-362107.0	NM_007937	13839.0	Mm.137991	NM_007937	ENSMUSG00000029245	Epha5	AI854630|AW125296|Cek7|Ehk1|Els1|Hek7|Rek7|bsk	Eph receptor A5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-50149966-4	chr17	50149924	50150124	+	816.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181397, intron 2 of 9)	intron (NM_181397, intron 2 of 9)	40473.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-144247513-4	chr2	144247417	144247617	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18685.0	NR_030762	100313519.0	Mm.453538	NR_030762	ENSMUSG00000077714	Snord17	MBI-43	small nucleolar RNA, C/D box 17	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-80691823-8	chr18	80691738	80691938	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198429, intron 2 of 9)	intron (NM_198429, intron 2 of 9)	16335.0	NM_001164111	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-88564899-4	chr5	88564811	88565011	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289775)	promoter-TSS (NM_001289775)	-129.0	NM_001289774	52822.0	Mm.270469	NM_027530	ENSMUSG00000029291	Rufy3	2810428M05Rik|6330416M07Rik|AW455998|AW538594|D5Bwg0860e|Ripx|Rpipx	RUN and FYVE domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-62266287-4	chr4	62266188	62266388	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTRIS_Mus|LTR|ERV1	-20141.0	NM_025286	20530.0	Mm.292539	NM_025286	ENSMUSG00000066152	Slc31a2	AI604396|CTR2	solute carrier family 31, member 2	protein-coding	1.58178092683066	3.02479920433217	2.82196150211806	3.4618592332445	2.27981148892152	3.14110321551809	1.45251037811646	3.02263825666867	-0.459266269683178	0.598817943636343	0.972303230574462
Merged-chr8-13138268-2	chr8	13138168	13138368	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146207, intron 15 of 19)	ORR1F|LTR|ERVL-MaLR	2196.0	NR_106032	102465645.0		NR_106032	ENSMUSG00000098532	Mir7065	Gm27871|mmu-mir-7065	microRNA 7065	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-4025486-2	chr15	4025386	4025586	+	978.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024188)	promoter-TSS (NM_024188)	-942.0	NM_024188	67041.0	Mm.13445	NM_024188	ENSMUSG00000022186	Oxct1	2610008O03Rik|Oxct|Oxct2a|Scot-s	3-oxoacid CoA transferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91993259-1	chr2	91993159	91993359	+	673.5	f1_balb.idr	intron (NM_011957, intron 4 of 11)	intron (NM_011957, intron 4 of 11)	-29696.0	NM_138306	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	-1.06932346315282	-1.04545378193536	-0.220844647149311	-1.06494782147003	-1.06867040657128	-1.04264807175102	-1.05547001227371	-1.06448932552894	-3.08190232315036	0.346744811462451	1
Merged-chr4-45597244-2	chr4	45597144	45597344	+	759.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger5|DNA|TcMar-Tigger	-42692.0	NR_151513	100040557.0	Mm.383510	NR_151513	ENSMUSG00000085980	Gm12408	-	predicted gene 12408	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-35654438-4	chr8	35654354	35654554	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081279, intron 1 of 2)	intron (NM_001081279, intron 1 of 2)	-65434.0	NR_040376	100504714.0	Mm.381744	NR_040376	ENSMUSG00000097357	Gm16793	-	predicted gene, 16793	ncRNA	5.162147852527	4.343110421278	5.23966244961934	5.36802177788707	4.71851939201042	4.68381109541252	5.14230550140492	4.89570988738335	-0.260006777350421	0.446599477943301	0.914281743208461
Merged-chr11-116388255-2	chr11	116388155	116388355	+	869.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_027258, intron 2 of 18)	B1_Mur3|SINE|Alu	24777.0	NM_027258	217340.0	Mm.426344	NM_027258	ENSMUSG00000052949	Rnf157	2610036E23Rik|A130073L17Rik|mKIAA1917	ring finger protein 157	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129182518-2	chr4	129182418	129182618	+	845.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_029036, exon 3 of 7)	exon (NM_029036, exon 3 of 7)	7024.0	NM_029036	74648.0	Mm.172064	NM_029036	ENSMUSG00000040928	S100pbp	4930429A08Rik|AI851343|S100pbpr	S100P binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-44646167-2	chr10	44646067	44646267	+	645.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-187419.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-18960066-2	chr10	18959966	18960166	+	718.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51897.0	NM_001166402	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-74821582-2	chr11	74821460	74821660	+	734.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9364.0	NM_010813	17428.0	Mm.3759	NM_010813	ENSMUSG00000000282	Mnt	Rox|bHLHd3	max binding protein	protein-coding	1.84735619478474	1.05093779222774	1.2694202757661	1.58585859474646	2.26805662105753	1.70747336476242	1.03293424025271	2.46131598299112	1.45057452442299	0.217962088891907	0.708842567601735
Merged-chr13-113491816-2	chr13	113491716	113491916	+	557.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045501, intron 1 of 6)	intron (NR_045501, intron 1 of 6)	11028.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-84102973-2	chr17	84102873	84103073	+	710.375	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	24313.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-32071111-3	chr19	32071017	32071217	+	768.455566	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018830, intron 2 of 23)	intron (NM_018830, intron 2 of 23)	32023.0	NM_018830	54447.0	Mm.491229	NM_018830	ENSMUSG00000024887	Asah2	AI585898	N-acylsphingosine amidohydrolase 2	protein-coding	0.27661759605785	1.19810743474278	1.58568827674322	0.833633222592717	0.279004160633187	0.316181581477294	0.304371964135208	0.294081216846009	-4.69162775503519	0.0110250515165478	0.116442401492553
Merged-chr4-25715180-1	chr4	25715080	25715280	+	696.5	f0_balb.idr	intron (NM_010243, intron 1 of 2)	MTD|LTR|ERVL-MaLR	84823.0	NM_010243	14348.0	Mm.39101	NM_010243	ENSMUSG00000055373	Fut9	AI746471|AU067636|mFUT9|mFuc-TIX	fucosyltransferase 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-52500069-4	chr2	52499972	52500172	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037099, intron 2 of 13)	intron (NM_001037099, intron 2 of 13)	58539.0	NM_146123	12298.0	Mm.330223	NM_146123	ENSMUSG00000017412	Cacnb4	3110038O15Rik|Cchb4|lh	calcium channel, voltage-dependent, beta 4 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-40703143-3	chr8	40703040	40703240	+	802.722229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	28063.0	NM_010086	13526.0	Mm.67403	NM_010086	ENSMUSG00000046723	Adam24	Dtgn5	a disintegrin and metallopeptidase domain 24 (testase 1)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-117488963-1	chr5	117488863	117489063	+	1000.0	f1_c57bl6.idr	intron (NM_001312914, intron 1 of 19)	RSINE1|SINE|B4	74961.0	NM_001312914	333050.0	Mm.437947	NM_001034873	ENSMUSG00000061578	Ksr2	-	kinase suppressor of ras 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124741155-4	chr6	124741053	124741253	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013535)	promoter-TSS (NM_013535)	-74.0	NM_013535	14790.0	Mm.439877	NM_013535	ENSMUSG00000072772	Grcc10	2310033H05Rik|C10	gene rich cluster, C10 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-59353381-2	chr2	59353281	59353481	+	683.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 20 of 20)	intron (NM_175464, intron 20 of 20)	33301.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-71866064-4	chr2	71865969	71866169	+	978.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_039557, intron 3 of 3).2	(T)n|Simple_repeat|Simple_repeat	-7155.0	NM_172665	228026.0	Mm.34411	NM_172665	ENSMUSG00000006494	Pdk1	B830012B01|D530020C15Rik	pyruvate dehydrogenase kinase, isoenzyme 1	protein-coding	2.10783411457438	1.64167131946834	2.65895826512869	3.23647449262348	3.81851115142415	4.198741759797	3.06658522130693	3.99971558117044	2.06224379849304	0.00227136598282307	0.0366945902988032
Merged-chr8-75081862-7	chr8	75081753	75081953	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-11765.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-116978953-4	chr8	116978805	116979005	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357254)	promoter-TSS (NM_001357254)	54.0	NM_027103	69528.0	Mm.272846	NM_027103	ENSMUSG00000031847	1700030J22Rik	-	RIKEN cDNA 1700030J22 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-83341509-2	chr13	83341409	83341609	+	740.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-162525.0	NM_001347572	17260.0	Mm.24001	NM_025282	ENSMUSG00000005583	Mef2c	5430401D19Rik|9930028G15Rik|AV011172|Mef2	myocyte enhancer factor 2C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-89476174-4	chr15	89476077	89476277	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_077233)	promoter-TSS (NR_077233)	-75.0	NR_077233	100532730.0	Mm.461541	NR_077233		C230037L18Rik	-	RIKEN cDNA C230037L18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-7819533-2	chr14	7819433	7819633	+	593.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081427, intron 1 of 45)	intron (NM_001081427, intron 1 of 45)	1576.0	NM_134080	286940.0	Mm.489652	NM_134080	ENSMUSG00000025278	Flnb	AL024016|Fln-b	filamin, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-113604807-4	chr6	113604729	113604929	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133937)	promoter-TSS (NM_133937)	57.0	NM_133937	101314.0	Mm.485793	NM_133937	ENSMUSG00000033940	Brk1	6720456B07Rik|AW011779	BRICK1, SCAR/WAVE actin-nucleating complex subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-36573435-3	chr5	36573337	36573537	+	852.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113362, intron 2 of 14)	intron (NM_001113362, intron 2 of 14)	8960.0	NM_133910	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-130003001-4	chr5	130002904	130003104	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010368)	promoter-TSS (NM_010368)	45.0	NM_010368	110006.0	Mm.3317	NM_010368	ENSMUSG00000025534	Gusb	AI747421|Gur|Gus|Gus-r|Gus-s|Gus-t|Gus-u|Gut|asd|g	glucuronidase, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-150841359-3	chr5	150841263	150841463	+	728.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-111244.0	NM_013823	16591.0	Mm.6500	NM_013823	ENSMUSG00000058488	Kl	alpha-kl	klotho	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-103146297-1	chr2	103146197	103146397	+	666.5	f0_balb.idr	Intergenic	MTEb|LTR|ERVL-MaLR	72622.0	NM_019735	56369.0	Mm.24772	NM_019735	ENSMUSG00000010911	Apip	APIP2|CGI-29|Mmrp19	APAF1 interacting protein	protein-coding	-1.84280077443174	-1.81293422041935	-1.67985321171519	-1.82938517824444	-1.69859129640937	-1.81097697164803	-1.81992149039197	-1.82805716908941	0.037684011990387	0.991491645451152	1
Merged-chr10-110760659-2	chr10	110760559	110760759	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358560, intron 4 of 12)	intron (NM_001358560, intron 4 of 12)	15220.0	NM_178609	52679.0	Mm.11747	NM_178609	ENSMUSG00000020185	E2f7	A630014C11Rik|D10Ertd739e|E2F-7	E2F transcription factor 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-81345283-4	chr7	81345192	81345392	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009092)	promoter-TSS (NM_009092)	-58.0	NM_009092	20068.0	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-16228432-4	chr1	16228314	16228514	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_025303)	TTS (NM_025303)	122532.0	NM_133832	98711.0	Mm.274376	NM_133832	ENSMUSG00000025921	Rdh10	3110069K09Rik|4921506A21Rik|AI875664|AW549993|D1Ertd762e|m366Asp	retinol dehydrogenase 10 (all-trans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-147010153-1	chr1	147010053	147010253	+	540.0	f1_balb.idr	Intergenic	Intergenic	512466.0	NM_001145807	215378.0	Mm.441817	NM_153539	ENSMUSG00000035131	Brinp3	B830045N13Rik|Fam5c	bone morphogenetic protein/retinoic acid inducible neural specific 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52927837-2	chr13	52927743	52927943	+	603.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016709, intron 1 of 9)	intron (NM_016709, intron 1 of 9)	1834.0	NM_016709	11992.0	Mm.252034	NM_016709	ENSMUSG00000021460	Auh	C77140|W91705	AU RNA binding protein/enoyl-coenzyme A hydratase	protein-coding	0.606369469041932	1.30580967724226	0.452465584491484	1.38120878496504	0.430430891443834	1.3199823401234	0.455024495656394	0.445018810083117	-1.18185412354403	0.497884965881961	0.936897994490085
Merged-chr4-138884420-4	chr4	138884297	138884497	+	821.950012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6455.0	NM_012044	26970.0	Mm.296007	NM_012044	ENSMUSG00000028751	Pla2g2e	-	phospholipase A2, group IIE	protein-coding	3.13179543528846	2.33626559814918	2.91518625912964	3.05422899522958	2.53997175100722	1.99304470606593	1.4378402280106	2.20284506463382	-1.64149244744407	0.0468795304759081	0.313523192112567
Merged-chr17-5047521-2	chr17	5047421	5047621	+	852.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 2 of 19)	intron (NM_001085355, intron 2 of 19)	52447.0	NM_001085355	239985.0	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-25627468-2	chr2	25627368	25627568	+	665.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_007995, exon 2 of 10)	exon (NM_007995, exon 2 of 10)	506.0	NM_007995	14133.0	Mm.10510	NM_007995	ENSMUSG00000026938	Fcna	Fcn1	ficolin A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-59316856-4	chr1	59316726	59316926	+	986.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356389, intron 10 of 13)	intron (NM_001356389, intron 10 of 13)	59920.0	NM_001356389	271697.0	Mm.297713	NM_001033373	ENSMUSG00000026023	Cdk15	Als2cr7|Pftk2	cyclin-dependent kinase 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-73291885-3	chr12	73291785	73291985	+	874.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037717, intron 2 of 15)	intron (NM_001037717, intron 2 of 15)	5037.0	NM_001037717	625098.0	Mm.32075	NM_001037717	ENSMUSG00000044712	Slc38a6	AW322671|EG625098	solute carrier family 38, member 6	protein-coding	2.31112818162733	1.21939562218625	1.18244649410306	1.15248559944855	2.84323131176479	3.06483420007638	2.44166501857168	2.24826661511321	2.58396484613899	0.0135310228958398	0.135212559165146
Merged-chr13-80862428-4	chr13	80862342	80862542	+	887.474976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20942.0	NR_153410	105171.0	Mm.423137	NM_001042591	ENSMUSG00000074794	Arrdc3	AI450344|mKIAA1376	arrestin domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-83113048-3	chr15	83112906	83113106	+	886.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023475, intron 9 of 11)	intron (NM_023475, intron 9 of 11)	9795.0	NM_001358061	74778.0	Mm.30056	NM_029101	ENSMUSG00000018040	Rrp7a	1110014J01Rik|AA408146|Kheg1	ribosomal RNA processing 7 homolog A (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-79455601-4	chr15	79455505	79455705	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13462.0	NM_001359863	27373.0	Mm.30199	NM_013767	ENSMUSG00000022433	Csnk1e	AI426939|AI551861|AW457082|CK1epsilon|CKIe|KC1epsilon|tau	casein kinase 1, epsilon	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123134826-2	chr5	123134726	123134926	+	781.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2197.0	NM_175092	23912.0	Mm.253876	NM_175092	ENSMUSG00000029449	Rhof	AI845056|AV026554|Arhf|Ifld1|Rif	ras homolog family member F (in filopodia)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-15396198-4	chr17	15396101	15396301	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024203)	promoter-TSS (NM_024203)	-1.0	NM_001357822	67544.0	Mm.35039	NM_024203	ENSMUSG00000014763	Fam120b	4932442K08Rik|AW049283|AW413338|CCPG|Pgcc1|mKIAA1838	family with sequence similarity 120, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-93967260-3	chr10	93967127	93967327	+	678.799988	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001304572, exon 12 of 12)	3' UTR (NM_001304572, exon 12 of 12)	-3364.0	NR_029764	723908.0		NR_029764	ENSMUSG00000065607	Mir331	Mirn331|mmu-mir-331	microRNA 331	ncRNA	2.46343934505601	3.15031645356934	2.87856848323418	3.52510360071117	2.01229054600665	1.34989807575415	1.30547632581607	1.96152235062293	-2.96817870355467	0.00101155480471349	0.0197236747783626
Merged-chr2-58198714-4	chr2	58198616	58198816	+	768.587524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34742.0	NR_045895	100042926.0	Mm.446515	NR_045895	ENSMUSG00000086862	Gm13546	-	predicted gene 13546	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-81533902-1	chr17	81533802	81534002	+	587.0	f0_balb.idr	intron (NR_104580, intron 2 of 8)	intron (NR_104580, intron 2 of 8)	204485.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-46153573-4	chr17	46153480	46153680	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025649)	promoter-TSS (NM_025649)	-29.0	NM_025649	66591.0	Mm.272024	NM_025649	ENSMUSG00000034509	Mad2l1bp	0610009D16Rik|2510031P20Rik|AU018945|AW550977|C76045|CMT2A|CMT2B|Mad2lbp|mKIAA0110	MAD2L1 binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-11484484-2	chr8	11484384	11484584	+	956.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5985.0	NM_011227	19332.0	Mm.37632	NM_011227	ENSMUSG00000031504	Rab20	AA536966|D8Ertd350e	RAB20, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-100031707-4	chr10	100031598	100031798	+	939.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347156, intron 1 of 8)	intron (NM_001347156, intron 1 of 8)	15877.0	NM_013598	17311.0	Mm.45124	NM_013598	ENSMUSG00000019966	Kitl	Clo|Con|Gb|Kitlg|Mgf|SCF|SF|SLF|Sl|blz|contrasted	kit ligand	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-12159526-4	chr17	12159420	12159620	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026644, intron 2 of 8)	intron (NM_026644, intron 2 of 8)	40236.0	NM_026644	68262.0	Mm.258300	NM_026644	ENSMUSG00000023827	Agpat4	1500003P24Rik	1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71610231-3	chr8	71610138	71610338	+	693.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146211)	promoter-TSS (NM_146211)	-786.0	NM_146211	234407.0	Mm.240885	NM_146211	ENSMUSG00000034807	Colgalt1	2810024B22Rik|Glt25d1	collagen beta(1-O)galactosyltransferase 1	protein-coding	2.65081785440839	3.30700224476203	2.2940550588815	2.60152234601858	2.48517355929901	1.50154494872436	3.35411442318523	2.08025712419528	-0.415369377497265	0.623434852608804	0.980259659844413
Merged-chr14-75015995-4	chr14	75015893	75016093	+	997.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198642)	promoter-TSS (NM_198642)	-34.0	NM_198642	271221.0	Mm.320280	NM_198642	ENSMUSG00000034959	Rubcnl	5031414D18Rik|Gm744|Gm911|Kiaa0226l	RUN and cysteine rich domain containing beclin 1 interacting protein like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-103101405-2	chr14	103101305	103101505	+	849.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-1839.0	NM_001360342	50789.0	Mm.214746	NM_015822	ENSMUSG00000022124	Fbxl3	AU041772|AW212966|FBK|Fbl3a|Fbxl3a|Ovtm|Play68	F-box and leucine-rich repeat protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-21956970-2	chr6	21956870	21957070	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001311061, intron 4 of 11)	intron (NM_001311061, intron 4 of 11)	7355.0	NM_023626	71777.0	Mm.39999	NM_023626	ENSMUSG00000029670	Ing3	1300013A07Rik|P47ING3	inhibitor of growth family, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16211016-2	chr7	16210923	16211123	+	587.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_027883, intron 6 of 16)	intron (NM_027883, intron 6 of 16)	10970.0	NM_001285931	71723.0	Mm.75259	NM_027883	ENSMUSG00000006019	Dhx34	1200013B07Rik|1810012L18Rik|Ddx34|mKIAA0134	DEAH (Asp-Glu-Ala-His) box polypeptide 34	protein-coding	-0.430767057662907	-0.417469459651016	0.266000121723759	-0.4251805414237	-0.429935396848151	-0.41648955175812	-0.420859997344614	0.130071973673565	-0.425236753432377	0.875098002111269	1
Merged-chr14-63543900-4	chr14	63543774	63543974	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177594)	promoter-TSS (NM_177594)	79.0	NM_177594	210376.0	Mm.441613	NM_177594	ENSMUSG00000035078	Mtmr9	9430075G12Rik|AA516943|AF073881|LIP-STYX|MTMR8|mMTMH3	myotubularin related protein 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-87027819-3	chr9	87027745	87027945	+	798.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359962, intron 2 of 14)	intron (NM_001359962, intron 2 of 14)	5816.0	NM_001359962	266690.0	Mm.30166	NM_024195	ENSMUSG00000032872	Cyb5r4	2810034J18Rik|B5+B5R|C79736|Cb5cb5r|Ncb5or|b5/b5r|b5b5r	cytochrome b5 reductase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-40963200-4	chr19	40963100	40963300	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008528, intron 4 of 16)	intron (NM_008528, intron 4 of 16)	31335.0	NM_008528	17060.0	Mm.9749	NM_008528	ENSMUSG00000061132	Blnk	BASH|Bca|Ly-57|Ly57|Lyw-57|SLP-65	B cell linker	protein-coding	0.375631779349764	0.0148553970612398	0.00929648693183344	0.00500409321085088	0.572763865646609	0.0161078133888146	0.694443231246039	0.00575420528458093	1.92497824510255	0.392870583919062	1
Merged-chr10-7825484-3	chr10	7825404	7825604	+	850.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6966.0	NM_172785	237256.0	Mm.140055	NM_172785	ENSMUSG00000039981	Zc3h12d	D730019B10Rik|TFL	zinc finger CCCH type containing 12D	protein-coding	1.45371206908774	1.63700948757976	2.89494688171401	1.33059703781651	1.27636104669578	2.58081361340682	1.77360155971244	1.86481226645462	-0.143117094074805	0.892440102411524	0.998431161219273
Merged-chr8-104436242-4	chr8	104436143	104436343	+	895.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013380, intron 4 of 12)	intron (NM_001013380, intron 4 of 12)	6804.0	NM_001013380	234663.0	Mm.289583	NM_001013380	ENSMUSG00000035770	Dync1li2	AA409702|C920003I06|Dncli2|Dnclic2|LIC2	dynein, cytoplasmic 1 light intermediate chain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-77771730-2	chr15	77771630	77771830	+	804.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_022410, intron 26 of 40)	intron (NM_022410, intron 26 of 40)	-14720.0	NM_001357895	239552.0	Mm.125650	NM_001081970	ENSMUSG00000056656	Apol8	9830006J20Rik|APOL-II|Apol2	apolipoprotein L 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-51618733-2	chr11	51618633	51618833	+	547.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1040.0	NM_026631	52530.0	Mm.28203	NM_026631	ENSMUSG00000001056	Nhp2	2410130M07Rik|D11Ertd175e|Nola2	NHP2 ribonucleoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123041075-2	chr5	123040975	123041175	+	871.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029112, intron 2 of 4)	intron (NM_029112, intron 2 of 4)	5941.0	NM_029112	74890.0	Mm.141383	NM_029112	ENSMUSG00000029477	Morn3	4930438O03Rik	MORN repeat containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-59152227-2	chr3	59152127	59152327	+	1000.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045641, exon 1 of 1)	non-coding (NR_045641, exon 1 of 1)	1265.0	NM_001287119	140795.0	Mm.439021	NM_133200	ENSMUSG00000036381	P2ry14	A330108O13Rik|Gpr105|P2Y14	purinergic receptor P2Y, G-protein coupled, 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-102393708-4	chr15	102393608	102393808	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12608.0	NM_013672	20683.0	Mm.4618	NM_013672	ENSMUSG00000001280	Sp1	1110003E12Rik|AA450830|AI845540|Sp1-1	trans-acting transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-160849901-2	chr2	160849801	160850001	+	588.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177263, intron 1 of 3)	intron (NM_177263, intron 1 of 3)	23089.0	NM_177263	320799.0	Mm.436734	NM_177263	ENSMUSG00000035877	Zhx3	1810059C13Rik|4932418O04Rik|9530010N21Rik|Tix1|mKIAA0395	zinc fingers and homeoboxes 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-37144670-2	chr6	37144570	37144770	+	960.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347104, intron 2 of 32)	intron (NM_001347104, intron 2 of 32)	155306.0	NM_001081206	320127.0	Mm.119469	NM_001081206	ENSMUSG00000038665	Dgki	6430604M11Rik|C130010K08Rik	diacylglycerol kinase, iota	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129313412-1	chr2	129313312	129313512	+	574.0	f1_c57bl6.idr	Intergenic	Intergenic	-3440.0	NM_010554	16175.0	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	-0.0917306780015663	0.376383068235895	-0.349738777193368	-0.353031711158423	-0.0852464708759142	-0.344505021007378	-0.348797104962686	-0.352456567376537	-1.99271314525951	0.425615079358088	1
Merged-chr8-113655674-1	chr8	113655574	113655774	+	623.0	f1_c57bl6.idr	TTS (NM_001048145)	TTS (NM_001048145)	12461.0	NM_001048145	668110.0	Mm.390078	NM_029139	ENSMUSG00000033409	Syce1l	4930481F22Rik|MMRP|PSESS|mmrp2	synaptonemal complex central element protein 1 like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-79561995-4	chr3	79561902	79562102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162999, intron 1 of 16)	intron (NM_001162999, intron 1 of 16)	5677.0	NM_001162999	329679.0	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-148165094-4	chr4	148165012	148165212	+	830.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_176848, exon 4 of 6)	exon (NM_176848, exon 4 of 6)	4444.0	NM_176848	230904.0	Mm.262287	NM_176848	ENSMUSG00000041556	Fbxo2	FBG1|FBX2|Fbs1|Fbs2|NFB42|Prpl4	F-box protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-10663948-4	chr8	10663803	10664003	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	218551.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-125551273-4	chr7	125551178	125551378	+	965.18335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1004.0	NM_001008700	16190.0	Mm.233802	NM_010557	ENSMUSG00000030748	Il4ra	CD124|Il4r	interleukin 4 receptor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167425584-2	chr2	167425484	167425684	+	792.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001304540, intron 2 of 16)	intron (NM_001304540, intron 2 of 16)	3874.0	NM_001304542	77031.0	Mm.278924	NM_148929	ENSMUSG00000039463	Slc9a8	1200006P13Rik|6430709P13Rik|AI182282|NHE-8|NHE8	solute carrier family 9 (sodium/hydrogen exchanger), member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-104632202-4	chr8	104632123	104632323	+	869.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019662)	promoter-TSS (NM_019662)	-902.0	NM_019662	56437.0	Mm.29467	NM_019662	ENSMUSG00000031880	Rrad	REM3|Rad	Ras-related associated with diabetes	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43466137-4	chr4	43466035	43466235	+	972.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11509.0	NM_007654	12517.0	Mm.188157	NM_007654	ENSMUSG00000028459	Cd72	CD72c|Ly-19|Ly-32|Ly-m19|Lyb-2	CD72 antigen	protein-coding	1.44438468324542	1.9005416600657	2.06276714373178	1.50986849165616	1.29581400589185	1.91460040295464	2.07938425678515	1.79507777369026	0.144384525708609	0.889671598517986	0.998431161219273
Merged-chr17-43267609-3	chr17	43267496	43267696	+	701.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2751.0	NM_133776	77596.0	Mm.159950	NM_133776	ENSMUSG00000041293	Adgrf1	5031409J19Rik|Gpr110|KPG_009	adhesion G protein-coupled receptor F1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-31069329-2	chr6	31069229	31069429	+	753.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6236.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75583766-2	chr11	75583666	75583866	+	757.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4313.0	NM_008850	18738.0	Mm.3128	NM_008850	ENSMUSG00000017781	Pitpna	Pitpn|vb|vibrator	phosphatidylinositol transfer protein, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135285824-2	chr4	135285620	135285820	+	759.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12960.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-83717931-2	chr16	83717831	83718031	+	599.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-653212.0	NR_040567	75247.0	Mm.417813	NR_040567		4930553E22Rik	-	RIKEN cDNA 4930553E22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-48331629-3	chr5	48331525	48331725	+	984.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40767.0	NM_025755	66768.0	Mm.29409	NM_025755	ENSMUSG00000029089	Pacrgl	4933428G09Rik	PARK2 co-regulated-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98971417-2	chr11	98971317	98971517	+	728.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361954, intron 5 of 7)	MER3|DNA|hAT-Charlie	6545.0	NM_001361954	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100369967-4	chr11	100369868	100370068	+	968.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010593, exon 14 of 14)	3' UTR (NM_010593, exon 14 of 14)	-13827.0	NM_010404	15114.0	Mm.281700	NM_010404	ENSMUSG00000006930	Hap1	HAP-1	huntingtin-associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-96699057-4	chr15	96698935	96699135	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355633, intron 1 of 14)	CpG	693.0	NM_001355633	67760.0	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-122079642-4	chr14	122079553	122079753	+	673.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27321.0	NR_015586	319727.0	Mm.215552	NR_015586		A330035P11Rik	-	RIKEN cDNA A330035P11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-34234676-2	chr10	34234576	34234776	+	742.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27125.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-32738651-4	chr17	32738551	32738751	+	995.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1A|DNA|hAT-Charlie	48896.0	NM_001346705	208292.0	Mm.38813	NM_172458	ENSMUSG00000024298	Zfp871	4732483N19|9030612M13Rik|AI118577|AI265322|mKIAA3006	zinc finger protein 871	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-115324378-2	chr10	115324278	115324478	+	549.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-8787.0	NM_024454	216344.0	Mm.21936	NM_024454	ENSMUSG00000020132	Rab21	9630024B22	RAB21, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-94339498-2	chr8	94339398	94339598	+	694.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019415, intron 8 of 24)	intron (NM_019415, intron 8 of 24)	10290.0	NM_001205311	20497.0	Mm.25804	NM_019415	ENSMUSG00000031766	Slc12a3	AI035291|NCC|NCCT|TSC	solute carrier family 12, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-16956681-4	chr11	16956557	16956757	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5247.0	NM_176982	319701.0	Mm.120672	NM_176982	ENSMUSG00000044966	Fbxo48	A630050E13Rik	F-box protein 48	protein-coding	3.92875028803534	3.20096393494457	4.06732796663139	4.32971567377382	3.96016089195527	3.22660292818818	4.60778885057215	4.56201998848864	0.342441384433149	0.492020931222675	0.934850158278556
Merged-chr9-118802589-2	chr9	118802489	118802689	+	769.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 3 of 13)	intron (NM_001113514, intron 3 of 13)	90897.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-23999708-2	chr5	23999606	23999806	+	950.5	f0_balb.idr|f1_c57bl6.idr	intron (NM_001310471, intron 2 of 10)	intron (NM_001310471, intron 2 of 10)	30606.0	NM_001310471	84652.0	Mm.304976	NM_053090	ENSMUSG00000028995	Fam126a	AB030242|Drctnnb1a	family with sequence similarity 126, member A	protein-coding	3.52355817853261	2.31623346554368	4.05027071678744	4.45354912213951	2.54610577296759	3.17094485247406	2.93124269895182	4.11140404456361	-0.690310741264678	0.295943357843595	0.798938452555064
Merged-chr15-57883934-3	chr15	57883837	57884037	+	930.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024207, intron 1 of 7)	intron (NM_024207, intron 1 of 7)	8481.0	NM_024207	67819.0	Mm.289387	NM_024207	ENSMUSG00000022365	Derl1	1110021N07Rik|AI195141|AW551338|Derlin-1	Der1-like domain family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-23555094-4	chr13	23555004	23555204	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145713)	promoter-TSS (NM_145713)	72.0	NM_145713	14957.0	Mm.247046	NM_145713	ENSMUSG00000052565	Hist1h1d	H1.3|H1D|H1f3|H1s-4	histone cluster 1, H1d	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-67905920-1	chr18	67905820	67906020	+	581.0	f1_balb.idr	Intergenic	Intergenic	-27253.0	NM_172631	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	0.312252414412212	0.354283943333623	1.58993551339105	0.554610579900276	0.51848471685334	0.357250193491872	1.6087567473819	0.332200073095364	0.0203797695657633	0.990766679267039	0.998431161219273
Merged-chr13-64364421-4	chr13	64364328	64364528	+	877.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009984, intron 7 of 7)	B4A|SINE|B4	6092.0	NM_009984	13039.0	Mm.930	NM_009984	ENSMUSG00000021477	Ctsl	1190035F06Rik|CatL|Ctsl1|MEP|fs|nkt	cathepsin L	protein-coding	3.80479967439783	3.29129417071633	3.28101241193086	3.51941879128283	3.50488786181266	2.78604956351517	3.64449822660338	3.73694938471865	-0.0392713706616256	0.943103071564229	0.998431161219273
Merged-chr3-116659165-2	chr3	116659065	116659265	+	615.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008246, intron 1 of 11)	intron (NM_008246, intron 1 of 11)	3512.0	NM_008246	15247.0	Mm.280077	NM_008246	ENSMUSG00000089911	Mfsd14a	Hiat1	major facilitator superfamily domain containing 14A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-52690170-1	chr18	52690070	52690270	+	798.0	f0_balb.idr	Intergenic	Intergenic	-3509.0	NM_010293	14625.0	Mm.32242	NM_010293	ENSMUSG00000053624	Gykl1	AI449806|Gk-rs1	glycerol kinase-like 1	protein-coding	1.0681471639815	0.805667489630032	1.18076281216833	0.592868649799523	1.07891731307818	0.811200274447442	1.19246841483549	0.594055005790037	0.0408891950815383	0.978651656082657	1
Merged-chr6-17793955-2	chr6	17793855	17794055	+	847.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_022332, intron 1 of 15)	intron (NM_022332, intron 1 of 15)	44785.0	NM_001083315	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-4966718-3	chr7	4966614	4966814	+	679.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001200041, exon 4 of 4)	3' UTR (NM_001200041, exon 4 of 4)	-2366.0	NM_001146329	381836.0	Mm.297829	NM_001146329	ENSMUSG00000030433	Sbk2	Gm1079|Sgk069	SH3-binding domain kinase family, member 2	protein-coding	1.19890552138049	0.906586445026375	1.29875740137052	0.87501918359229	1.46859687745852	1.79552888224692	1.46793084644947	2.17690643061791	2.61749848572495	0.0411390474597326	0.289228390006719
Merged-chr19-42130863-4	chr19	42130796	42130996	+	987.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1903.0	NM_027106	69534.0	Mm.30060	NM_027106	ENSMUSG00000018821	Avpi1	2310008N12Rik|AA410041|VIT32|esu|mVIT32	arginine vasopressin-induced 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-10894272-1	chr18	10894172	10894372	+	557.5	f0_balb.idr	Intergenic	Intergenic	-108720.0	NR_029781	723959.0		NR_029781	ENSMUSG00000106348	Mir1a-2	Mir1-2|Mirn1-2|mir-1a-2|mmu-mir-1-2|mmu-mir-1a-2	microRNA 1a-2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141559826-4	chr7	141559761	141559961	+	800.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur3|SINE|Alu	-2319.0	NM_001357068	11772.0	Mm.253090	NM_007459	ENSMUSG00000002957	Ap2a2	2410074K14Rik|AF006990|AW146353|Adtab|C78001|L25	adaptor-related protein complex 2, alpha 2 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-17702562-2	chr16	17702482	17702682	+	870.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285886, intron 2 of 16)	ORR1C1|LTR|ERVL-MaLR	20318.0	NM_001285886	94112.0	Mm.208970	NM_033609	ENSMUSG00000012114	Med15	A230074L19Rik|AW536074|Pcqap|mPcqap	mediator complex subunit 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-95857630-4	chr9	95857521	95857721	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019864)	promoter-TSS (NM_019864)	24.0	NM_019864	245000.0	Mm.212462	NM_019864	ENSMUSG00000032409	Atr	-	ataxia telangiectasia and Rad3 related	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-22632500-1	chr11	22632400	22632600	+	555.0	f0_balb.idr	Intergenic	Intergenic	120217.0	NM_153596	103765.0	Mm.221274	NM_153596	ENSMUSG00000049904	Tmem17	AI503894|AW049890	transmembrane protein 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-135710467-4	chr7	135710376	135710576	+	964.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081117, intron 4 of 13)	intron (NM_001081117, intron 4 of 13)	5903.0	NM_001081117	17345.0	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-120307105-4	chr14	120306948	120307148	+	923.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360376, intron 1 of 8)	intron (NM_001360376, intron 1 of 8)	596.0	NM_001360376	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-121968008-6	chr3	121967921	121968121	+	993.8095089999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356524, intron 1 of 22)	intron (NM_001356524, intron 1 of 22)	215.0	NM_001356524	214137.0	Mm.229287	NM_172525	ENSMUSG00000039831	Arhgap29	6720461J18Rik|A830014I19|AU040217|B130017I01Rik|C76601|Parg1	Rho GTPase activating protein 29	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-80173323-2	chr15	80173223	80173423	+	754.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010795)	promoter-TSS (NM_010795)	-398.0	NM_010795	17309.0	Mm.299693	NM_010795	ENSMUSG00000042428	Mgat3	1110038J12Rik|AI848272|GnT-III	mannoside acetylglucosaminyltransferase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-16473553-3	chr16	16473467	16473667	+	756.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301817, intron 7 of 16)	RLTR10D2|LTR|ERVK	53844.0	NM_001301818	224014.0	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141952347-4	chr4	141952254	141952454	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177868, intron 12 of 31)	intron (NM_177868, intron 12 of 31)	-30638.0	NR_040672	545691.0	Mm.332015	NR_040672	ENSMUSG00000085424	Fhad1os1	Gm13037	forkhead-associated (FHA) phosphopeptide binding domain 1, opposite strand 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-22860526-4	chr11	22860430	22860630	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001169114)	promoter-TSS (NM_001169114)	-194.0	NM_001169114	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-21036715-4	chr19	21036673	21036873	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-67937.0	NR_126458	75354.0	Mm.243873	NR_126458		4930554I06Rik	-	RIKEN cDNA 4930554I06 gene	ncRNA	5.02522638606855	4.9853396682618	4.87498244516103	5.33749240137995	5.46562276720751	4.83419164192662	5.06557215908179	3.69853937091058	-0.187287374076737	0.626520414411752	0.980912176761026
Merged-chr13-99306382-4	chr13	99306280	99306480	+	885.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38298.0	NM_026873	68927.0	Mm.276502	NM_026873	ENSMUSG00000021650	Ptcd2	1190005P08Rik	pentatricopeptide repeat domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122219196-4	chr5	122219079	122219279	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359454, intron 3 of 7)	intron (NM_001359454, intron 3 of 7)	8892.0	NM_028752	74096.0	Mm.28804	NM_028752	ENSMUSG00000064267	Hvcn1	0610039P13Rik|AI450555|BTS|HV1|Vsop.|mVSOP	hydrogen voltage-gated channel 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-118321799-4	chr1	118321731	118321931	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026472)	promoter-TSS (NM_026472)	-12.0	NM_026472	67949.0	Mm.280311	NM_026472	ENSMUSG00000026377	Nifk	AI852665|C130020J04Rik|Mki67ip	nucleolar protein interacting with the FHA domain of MKI67	protein-coding	5.78394926767912	5.48723597048632	6.07370013697913	5.73080486502104	5.78623673474924	6.02145967534669	6.35725945300361	5.58907409202781	0.196531312651959	0.449006953886955	0.91525406604412
Merged-chr2-139591438-3	chr2	139591330	139591530	+	863.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356507, intron 8 of 11)	intron (NM_001356507, intron 8 of 11)	-86748.0	NM_001276489	319909.0	Mm.41113	NM_001126490	ENSMUSG00000074766	Ism1	5430433G21Rik|Ism	isthmin 1, angiogenesis inhibitor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-87257687-3	chr17	87257588	87257788	+	749.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176808, intron 3 of 4)	intron (NM_176808, intron 3 of 4)	8259.0	NM_176808	193813.0	Mm.30251	NM_139295	ENSMUSG00000024150	Mcfd2	1810021C21Rik|F5f8d|Lman1ip|Sdnsf	multiple coagulation factor deficiency 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-5012665-2	chr16	5012565	5012765	+	988.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133185, intron 2 of 10)	intron (NM_133185, intron 2 of 10)	888.0	NM_133185	66049.0	Mm.27792	NM_133185	ENSMUSG00000022540	Rogdi	0610011C19Rik|AU020118|C76152|Lzf	rogdi homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69258596-4	chr11	69258554	69258754	+	842.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-21632.0	NM_008192	14919.0	Mm.291816	NM_008192	ENSMUSG00000020890	Gucy2e	GC-E|GC1|ROS-GC1	guanylate cyclase 2e	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98457907-4	chr11	98457783	98457983	+	918.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	11049.0	NM_010346	14786.0	Mm.276702	NM_010346	ENSMUSG00000019312	Grb7	mKIAA4028	growth factor receptor bound protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-106258010-2	chr9	106257910	106258110	+	913.0	f0_c57.idr|f1_c57bl6.idr	Intergenic	MLT2C1|LTR|ERVL	-10056.0	NM_020559	11655.0	Mm.290578	NM_020559	ENSMUSG00000032786	Alas1	ALAS|ALAS-N|Alas-1|Alas-h	aminolevulinic acid synthase 1	protein-coding	2.96838565470085	2.67941662019026	1.28539509266998	3.6308503374935	1.16581715726398	1.0220752793548	0.979258604981603	1.24626232788847	-4.75630629693558	0.000209493106715107	0.00560215073038897
Merged-chr11-51620573-2	chr11	51620473	51620673	+	868.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_026631, intron 2 of 3)	intron (NM_026631, intron 2 of 3)	800.0	NM_026631	52530.0	Mm.28203	NM_026631	ENSMUSG00000001056	Nhp2	2410130M07Rik|D11Ertd175e|Nola2	NHP2 ribonucleoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-53224429-2	chr15	53224329	53224529	+	581.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	121754.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116622918-2	chr11	116622817	116623017	+	731.0	f0_c57.idr|f1_c57bl6.idr	intron (NM_172572, intron 1 of 18)	intron (NM_172572, intron 1 of 18)	1335.0	NM_001167680	217344.0	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	0.901004414362559	0.631493913659048	0.620523441146969	0.954020745598955	1.4095703526849	1.18618342479548	0.622954804848485	1.50276443383517	2.15787346796264	0.165889758666491	0.631187735036117
Merged-chr15-64197191-3	chr15	64197069	64197269	+	806.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 4 of 28)	intron (NM_001276461, intron 4 of 28)	115504.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-60444367-4	chr14	60444276	60444476	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR40|LTR|ERVK	66090.0	NM_001164705	72125.0	Mm.275499	NM_028113	ENSMUSG00000021986	Amer2	2600011E07Rik|Fam123a	APC membrane recruitment 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-22162811-2	chr16	22162711	22162911	+	841.3333130000001	f1_balb.idr|f1_c57bl6.idr	exon (NM_183029, exon 1 of 16)	exon (NM_183029, exon 1 of 16)	488.0	NM_183029	319765.0	Mm.489442	NM_183029	ENSMUSG00000033581	Igf2bp2	C330012H03Rik|IMP-2|Imp2|Neilsen	insulin-like growth factor 2 mRNA binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-78355670-2	chr11	78355570	78355770	+	544.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8960.0	NM_001313987	22248.0	Mm.284811	NM_011676	ENSMUSG00000002058	Unc119	D11Bhm52|HRG4|MRG4|Rg4|Rtg4|Unc119h	unc-119 lipid binding chaperone	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-115313541-2	chr10	115313441	115313641	+	682.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_024454, intron 1 of 6)	intron (NM_024454, intron 1 of 6)	2050.0	NM_024454	216344.0	Mm.21936	NM_024454	ENSMUSG00000020132	Rab21	9630024B22	RAB21, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-10741283-2	chr16	10741183	10741383	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177562, intron 22 of 22)	intron (NM_177562, intron 22 of 22)	44253.0	NM_009896	12703.0	Mm.130	NM_009896	ENSMUSG00000038037	Socs1	Cish1|Cish7|JAB|SOCS-1|SSI-1	suppressor of cytokine signaling 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-88564280-1	chr10	88564180	88564380	+	719.666687	f0_c57.idr	intron (NM_175418, intron 8 of 28)	intron (NM_175418, intron 8 of 28)	40872.0	NM_001252372	109272.0	Mm.147208	NM_175418	ENSMUSG00000020061	Mybpc1	8030451F13Rik	myosin binding protein C, slow-type	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-76322486-2	chr14	76322386	76322586	+	610.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	71024.0	NR_152108	72893.0	Mm.233565	NR_152108		2900040C04Rik	-	RIKEN cDNA 2900040C04 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-5117111-2	chr2	5117011	5117211	+	804.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20665.0	NM_028804	74186.0	Mm.274715	NM_028804	ENSMUSG00000026676	Ccdc3	2310045O21Rik	coiled-coil domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139001909-2	chr5	139001809	139002009	+	679.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6956.0	NM_008808	18590.0	Mm.2675	NM_008808	ENSMUSG00000025856	Pdgfa	-	platelet derived growth factor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-27497827-4	chr14	27497747	27497947	+	828.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177111, intron 6 of 17)	MIR|SINE|MIR	10613.0	NM_177111	320234.0	Mm.247767	NM_177111	ENSMUSG00000046753	Ccdc66	E230015L20Rik	coiled-coil domain containing 66	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24220793-4	chr17	24220694	24220894	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028056)	promoter-TSS (NM_028056)	57.0	NM_028056	72016.0	Mm.23881	NM_028056	ENSMUSG00000024118	Tedc2	1600002H07Rik	tubulin epsilon and delta complex 2	protein-coding	6.01039055007715	5.97536227361452	6.12478460812554	5.82938585083756	6.2873928862606	5.72223752588633	6.00339330745555	5.91545559775365	0.0182599504119943	0.937664708389884	0.998431161219273
Merged-chr5-14049226-3	chr5	14049131	14049331	+	949.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011348, intron 1 of 16)	L3|LINE|CR1	23955.0	NM_011348	20349.0	Mm.134093	NM_011348	ENSMUSG00000063531	Sema3e	6430702L12|AA408817|Semah|mKIAA0331	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-16132556-4	chr19	16132459	16132659	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008139)	promoter-TSS (NM_008139)	-272.0	NM_008139	14682.0	Mm.439701	NM_008139	ENSMUSG00000024639	Gnaq	1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI	guanine nucleotide binding protein, alpha q polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-25365343-2	chr10	25365243	25365443	+	785.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358754, intron 1 of 16)	intron (NM_001358754, intron 1 of 16)	5545.0	NM_001358751	13822.0	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-25472591-4	chr18	25472483	25472683	+	995.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	207165.0	NM_001362337	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-118724508-2	chr14	118724408	118724608	+	561.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-18289.0	NM_001033336	239273.0	Mm.40537	NM_001033336	ENSMUSG00000032849	Abcc4	ABCC4-N1|D630049P08Rik|MOATB|MRP4	ATP-binding cassette, sub-family C (CFTR/MRP), member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-76217846-3	chr16	76217730	76217930	+	965.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	95217.0	NR_040575	78215.0	Mm.243885	NR_040575		4930578N18Rik	-	RIKEN cDNA 4930578N18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-118704432-4	chr7	118704386	118704586	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019580, intron 1 of 5)	intron (NM_019580, intron 1 of 5)	1252.0	NM_019580	56209.0	Mm.273142	NM_019580	ENSMUSG00000033917	Gde1	1200003M13Rik|Mir16|RGS16	glycerophosphodiester phosphodiesterase 1	protein-coding	5.34887404333947	5.57844430939806	5.9714212959176	5.26488596284923	4.49157881994962	3.04542590474985	4.38525497839105	4.05743742429138	-1.74352897491983	3.56419651636011e-06	0.000192050433248302
Merged-chr5-118649872-2	chr5	118649772	118649972	+	881.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347445, intron 2 of 30)	intron (NM_001347445, intron 2 of 30)	89153.0	NM_172424	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-111943639-2	chr13	111943539	111943739	+	771.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	75703.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-31151304-3	chr9	31151220	31151420	+	848.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357698, intron 17 of 17)	intron (NM_001357698, intron 17 of 17)	-19521.0	NM_011176	19143.0	Mm.243926	NM_011176	ENSMUSG00000031995	St14	Epithin|MT-SP1|Prss14|Tmprss14|mCAP3|matriptase	suppression of tumorigenicity 14 (colon carcinoma)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-18564815-4	chr8	18564715	18564915	+	991.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30316.0	NM_173189	244329.0	Mm.235296	NM_173189	ENSMUSG00000039842	Mcph1	5430437K10Rik|BRIT1|D030046N04Rik|MCT|Tg(HLA-A2.1)1Enge	microcephaly, primary autosomal recessive 1	protein-coding	1.95808148834668	2.1935662351585	1.34571775672427	2.1885238054197	2.09438164806618	2.77455587421785	2.68190685804639	2.31418848494813	1.26178185863958	0.158961257187169	0.618289549513179
Merged-chr7-16054671-2	chr7	16054571	16054771	+	583.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-17174.0	NM_001347559	666528.0	Mm.290718	NM_001099277	ENSMUSG00000078796	Zfp541	EG666528|Znf541	zinc finger protein 541	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-161500953-4	chr1	161500849	161501049	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183391, intron 2 of 2)	intron (NM_183391, intron 2 of 2)	6292.0	NM_183391	240873.0	Mm.276823	NM_183391	ENSMUSG00000066755	Tnfsf18	Gitrl|Tnlg2a	tumor necrosis factor (ligand) superfamily, member 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-5495659-4	chr15	5495554	5495754	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045274)	promoter-TSS (NR_045274)	-664.0	NR_045274	71432.0	Mm.291087	NR_045274	ENSMUSG00000110018	5430437J10Rik	-	RIKEN cDNA 5430437J10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-25985255-1	chr17	25985155	25985355	+	637.333313	f0_balb.idr	intron (NM_001347334, intron 1 of 11)	CpG	541.0	NR_151779	50817.0	Mm.216072	NM_015830	ENSMUSG00000037326	Capn15	Solh	calpain 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-26604443-4	chr11	26604334	26604534	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-10514.0	NM_001252447	69922.0	Mm.285351	NM_027260	ENSMUSG00000064090	Vrk2	2810003O05Rik|AI447698	vaccinia related kinase 2	protein-coding	2.01115504023585	2.59616837184709	2.65404971539746	2.57081535352409	0.900398541556385	1.00370415449575	0.971993964480204	0.94356634776719	-5.79519559988942	9.71190773411459e-06	0.000449319289179589
Merged-chr17-67338196-2	chr17	67338096	67338296	+	567.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	B4|SINE|B4	16263.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-50111202-2	chr6	50111102	50111302	+	741.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361248, intron 1 of 13)	intron (NM_001361248, intron 1 of 13)	342.0	NM_001361248	56524.0	Mm.41288	NM_008016	ENSMUSG00000038388	Mpp6	P55t|Pals2	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-85775679-2	chr11	85775579	85775779	+	829.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_046194)	promoter-TSS (NR_046194)	1.0	NR_046194	78420.0	Mm.488197	NR_046194	ENSMUSG00000085514	Bcas3os2	9530048J24Rik	breast carcinoma amplified sequence 3 opposite strand 2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-84390509-4	chr10	84390433	84390633	+	949.479126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004363, intron 4 of 6)	intron (NM_001004363, intron 4 of 6)	49938.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95987929-4	chr3	95987830	95988030	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_045872)	TTS (NR_045872)	2420.0	NR_045872	668224.0	Mm.357766	NR_045872		Gm9054	EG668224	predicted gene 9054	ncRNA	-0.249670368887484	-0.236848518551872	-0.0707252527558469	-0.0863774702613881	0.119031600376593	0.367101816460034	-0.240134251198518	-0.243739026508956	1.8407636387303	0.426085342026909	1
Merged-chr18-60718806-2	chr18	60718706	60718906	+	620.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001348146, intron 1 of 6)	intron (NM_001348146, intron 1 of 6)	8760.0	NM_001348103	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-155149269-2	chr4	155149169	155149369	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	62665.0	NM_001356327	76866.0	Mm.200590	NM_001081100	ENSMUSG00000029049	Morn1	2900057D20Rik|4930417P05Rik|AU042805	MORN repeat containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-77868585-4	chr18	77868460	77868660	+	980.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013831, intron 6 of 14)	ID2|SINE|ID	-69907.0	NM_001195633	100502841.0	Mm.297782	NM_001195633	ENSMUSG00000039840	Epg5	4732475F16|5430411K18Rik|AI661957|AW456499|mKIAA1632	ectopic P-granules autophagy protein 5 homolog (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-38724216-4	chr9	38724115	38724315	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145957, intron 6 of 18)	intron (NM_001145957, intron 6 of 18)	5947.0	NM_172767	67776.0	Mm.290950	NM_172767	ENSMUSG00000023186	Vwa5a	5830475I06Rik|AW552491|BCSC-1|E130119J22|Loh11cr2a	von Willebrand factor A domain containing 5A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83033580-4	chr6	83033476	83033676	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291799)	promoter-TSS (NM_001291799)	-105.0	NM_001291799	13448.0	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	3.14941188275941	2.38404668235357	2.6679905779934	2.37402253835147	2.38544324284367	2.40099176483016	2.17090022233097	2.7042399053269	-0.557948927728847	0.465455999312009	0.922736970596151
Merged-chr11-29692233-4	chr11	29692115	29692315	+	990.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_194053)	promoter-TSS (NM_194053)	-683.0	NM_194053	68585.0	Mm.192580	NM_024226	ENSMUSG00000020458	Rtn4	1110020G17Rik|AA407876|AA409940|AA960376|ASY|C130026I10Rik|NOGO|NSP-CL|NgA|Nogo-A|Nogo-B|Nogo-C|mKIAA0886|mKIAA4153	reticulon 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-35921885-2	chr16	35921785	35921985	+	821.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-16585.0	NM_030253	80285.0	Mm.49074	NM_030253	ENSMUSG00000022906	Parp9	ARTD9|AW214463|BC003281|Bagl|Bal|PARP-9	poly (ADP-ribose) polymerase family, member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-55829018-4	chr3	55828919	55829119	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030595, intron 38 of 57)	intron (NM_030595, intron 38 of 57)	-18086.0	NR_033592	71182.0	Mm.195603	NR_033592	ENSMUSG00000106572	4933417G07Rik	-	SEC13 homolog pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-180657534-2	chr2	180657434	180657634	+	826.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_175551)	TTS (NM_175551)	-14843.0	NM_001360335	277353.0	Mm.473700	NM_178254	ENSMUSG00000038932	Tcfl5	Figlb|Sosf1	transcription factor-like 5 (basic helix-loop-helix)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-60916849-3	chr14	60916769	60916969	+	856.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	121118.0	NM_001164155	29820.0	Mm.281356	NM_013869	ENSMUSG00000060548	Tnfrsf19	AL023044|AW123854|TAJ|TAJ-ALPHA|TRADE|Troy	tumor necrosis factor receptor superfamily, member 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-31130973-3	chr9	31130886	31131086	+	777.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011176, intron 1 of 18)	intron (NM_011176, intron 1 of 18)	813.0	NM_011176	19143.0	Mm.243926	NM_011176	ENSMUSG00000031995	St14	Epithin|MT-SP1|Prss14|Tmprss14|mCAP3|matriptase	suppression of tumorigenicity 14 (colon carcinoma)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83653337-8	chr6	83653227	83653427	+	949.0083619999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016751, intron 3 of 6)	intron (NM_016751, intron 3 of 6)	2789.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	1.69290804577335	1.0150964198322	0.994041353016856	2.31452665362436	1.70814557029832	1.01975432130149	1.97780747255748	1.91059709708142	0.174702155181859	0.891039373196159	0.998431161219273
Merged-chr12-111168546-2	chr12	111168446	111168646	+	703.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286122, intron 1 of 9)	RMER2|LTR|ERV1	2176.0	NM_011632	22031.0	Mm.27431	NM_011632	ENSMUSG00000021277	Traf3	AI528849|CAP-1|CD40bp|CRAF1|LAP1|T-BAM|amn	TNF receptor-associated factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-52048809-3	chr9	52048682	52048882	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_023357)	promoter-TSS (NR_023357)	-77.0	NR_023357	629557.0	Mm.422775	NR_023357		Gm6981	EG629557	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-148676803-4	chr4	148676702	148676902	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33485.0	NM_001085505	230909.0	Mm.332067	NM_001085505	ENSMUSG00000070577	Gm572	b2b1167Clo	predicted gene 572	protein-coding	3.98737783372857	3.79407950256098	2.90860100936119	3.64149147143692	4.27913988761121	4.51287887768182	4.11222289605443	3.40845245596748	0.685683881871147	0.173161301290491	0.640902961210202
Merged-chr7-16398574-4	chr7	16398499	16398699	+	781.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2597.0	NM_198631	330474.0	Mm.333594	NM_198631	ENSMUSG00000059273	Zc3h4	Bwq1|Gm768|Kiaa1064-hp|mKIAA1064	zinc finger CCCH-type containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-68822793-2	chr7	68822693	68822893	+	665.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73555.0	NM_025549	66412.0	Mm.251199	NM_025549	ENSMUSG00000042659	Arrdc4	2410003C09Rik|AV216361	arrestin domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-107886873-3	chr13	107886787	107886987	+	906.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 2 of 14)	intron (NM_145456, intron 2 of 14)	3177.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-84689990-4	chr7	84689900	84690100	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360577)	promoter-TSS (NM_001360577)	-43.0	NM_001360582	65098.0	Mm.209349	NM_022985	ENSMUSG00000030629	Zfand6	3110005P07Rik|Awp1|Za20d3	zinc finger, AN1-type domain 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-25871790-2	chr17	25871690	25871890	+	788.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3052.0	NM_026633	68241.0	Mm.328870	NM_026633	ENSMUSG00000025732	Mcrip2	9530058B02Rik|Fam195a	MAPK regulated corepressor interacting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-85625441-1	chr1	85625341	85625541	+	922.0	f1_balb.idr	intron (NM_001013817, intron 7 of 16)	intron (NM_001013817, intron 7 of 16)	-21550.0	NM_175397	109032.0	Mm.335802	NM_030194	ENSMUSG00000070034	Sp110	5031415C07Rik|52kDa|5830484A20Rik|Ifi75|Ipr1	Sp110 nuclear body protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-34642552-2	chr1	34642452	34642652	+	900.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6342.0	NR_033627	241051.0	Mm.282827	NR_033627		AA619741	-	PHD finger protein 19 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-63047203-2	chr6	63047103	63047303	+	806.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13B|LTR|ERVK	-209654.0	NM_008167	14804.0	Mm.439651	NM_008167	ENSMUSG00000071424	Grid2	B230104L07Rik|GluD2|GluRdelta2|Lc|Lc<J>|MMS10-AC|Ms10ac|cpr|ho|nmf408|tpr	glutamate receptor, ionotropic, delta 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34247944-1	chr17	34247844	34248044	+	577.0	f1_c57bl6.idr	Intergenic	Intergenic	9039.0	NM_010389	15002.0	Mm.327358	NM_010389	ENSMUSG00000041538	H2-Ob	A-beta-2|A-beta2|H-2Ab|H-2I|H-2Ob|H2-Ab|H2-Ab2|H2-IAb2|Ob	histocompatibility 2, O region beta locus	protein-coding	1.98859514707421	2.69293196008986	0.876004556457339	0.85368612471964	0.820538668610316	1.95007319098146	0.882227191559596	2.22095008804887	-0.556057096424145	0.817549727823121	0.998431161219273
Merged-chr2-153556051-1	chr2	153555951	153556151	+	1000.0	f1_balb.idr	Intergenic	Intergenic	-26080.0	NM_001134300	329540.0	Mm.50600	NM_001001986	ENSMUSG00000061411	Nol4l	4931410H15|8430427H17Rik|AI429157|Gm1636	nucleolar protein 4-like	protein-coding	-1.58994551673671	-1.55912852307891	-1.56844783632235	-1.57610299769523	-1.18549093183599	-1.55710898902261	-1.56633814807757	-1.57473272746952	1.78703309985663	0.610309988231842	1
Merged-chr18-39359548-2	chr18	39359448	39359648	+	780.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175164, intron 21 of 22)	intron (NM_175164, intron 21 of 22)	127697.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	-2.18308165884198	-2.15547475440471	-2.16382331017202	-2.1706810624505	-2.18114370519566	-2.15366558754311	-2.03057248461154	-2.16945352807143	0.759018020146679	0.829933115115583	1
Merged-chr14-20785487-1	chr14	20785387	20785587	+	800.666687	f0_balb.idr	intron (NM_001039139, intron 2 of 18)	intron (NM_001039139, intron 2 of 18)	8601.0	NM_001039138	12325.0	Mm.235182	NM_178597	ENSMUSG00000021820	Camk2g	Camkg	calcium/calmodulin-dependent protein kinase II gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-193844644-4	chr1	193844525	193844725	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-337095.0	NR_029592	387201.0		NR_029592	ENSMUSG00000065533	Mir205	Mirn205|mir-205|mmu-mir-205	microRNA 205	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-59188342-2	chr2	59188242	59188442	+	709.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 1 of 20)	intron (NM_175464, intron 1 of 20)	27492.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-96629406-3	chr7	96629301	96629501	+	908.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011858, intron 5 of 32)	intron (NM_011858, intron 5 of 32)	172148.0	NR_045874	791381.0	Mm.402112	NR_045874	ENSMUSG00000053049	Gm15413	-	predicted gene 15413	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-79371679-3	chr7	79371578	79371778	+	638.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15349.0	NM_020599	19771.0	Mm.41653	NM_020599	ENSMUSG00000039194	Rlbp1	3110056M11Rik|CRALBP	retinaldehyde binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-73034608-4	chr17	73034510	73034710	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73375.0	NM_001177968	225010.0	Mm.329194	NM_001081071	ENSMUSG00000054469	Lclat1	AI181996|Agpat8|Alcat1|Gm91|Lycat	lysocardiolipin acyltransferase 1	protein-coding	5.91327494791421	5.37637050773911	5.2144652120956	5.45374793763668	6.06042768572001	6.41462268011742	5.77999396420144	6.08334011043926	0.640264086563244	0.0147344221640115	0.143338051722008
Merged-chr15-99823560-4	chr15	99823478	99823678	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113545, intron 3 of 10)	intron (NM_001113545, intron 3 of 10)	-3429.0	NM_023063	65970.0	Mm.33207	NM_023063	ENSMUSG00000023022	Lima1	Eplin	LIM domain and actin binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102438726-2	chr12	102438610	102438810	+	705.5	f0_balb.idr|f0_c57.idr	intron (NM_011175, intron 1 of 13)	intron (NM_011175, intron 1 of 13)	1103.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-4343501-4	chr18	4343284	4343484	+	852.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007746, intron 2 of 7)	intron (NM_007746, intron 2 of 7)	9569.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-119827971-4	chr8	119827876	119828076	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028071, intron 2 of 3)	intron (NM_028071, intron 2 of 3)	12603.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-3156968-4	chr11	3156757	3156957	+	999.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_030207, exon 12 of 33)	exon (NM_030207, exon 12 of 33)	32836.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-95072778-4	chr9	95072660	95072860	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177909, intron 12 of 15)	intron (NM_177909, intron 12 of 15)	320931.0	NR_106116	102465763.0		NR_106116	ENSMUSG00000098251	Mir7656	Gm27614|mmu-mir-7656	microRNA 7656	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-98382600-2	chr8	98382500	98382700	+	936.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur2|LINE|L1	-629287.0	NR_110579	100873092.0	Mm.414599	NR_110579	ENSMUSG00000089819	Gm15679	-	predicted gene 15679	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-84745776-1	chr3	84745676	84745876	+	932.0	f0_balb.idr	Intergenic	Intergenic	-69801.0	NM_001177773	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	-1.5061220274826	-1.47360709383584	-1.48343987814663	-1.49151681994238	-1.50383953926072	-1.47147628845725	-1.0170701920923	-1.49007105122263	2.15652851593596	0.535359572134045	1
Merged-chr5-102071388-4	chr5	102071252	102071452	+	882.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1431.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-45030713-6	chr19	45030467	45030667	+	897.680542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195265, intron 10 of 15)	MIRb|SINE|MIR	12432.0	NM_001130526	226154.0	Mm.28204	NM_145503	ENSMUSG00000035342	Lzts2	BC014695|LAPSER1|mKIAA1813	leucine zipper, putative tumor suppressor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-65671160-3	chr18	65671063	65671263	+	926.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361052, intron 6 of 8)	intron (NM_001361052, intron 6 of 8)	-27105.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	3.8102101687673	4.44051752442387	3.48637927816542	4.43400934964436	3.95905762478301	4.47077485827575	4.38666100991322	4.6616991981792	0.382344103031949	0.381541843559446	0.872879327710422
Merged-chr6-31101106-2	chr6	31101006	31101206	+	609.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_110471, intron 3 of 3)	intron (NR_110471, intron 3 of 3)	-38013.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-98351583-4	chr9	98351481	98351681	+	956.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357445, intron 1 of 3)	intron (NM_001357445, intron 1 of 3)	55011.0	NM_001357451	74080.0	Mm.294082	NM_144533	ENSMUSG00000032456	Nmnat3	4933408N02Rik|PNAT3	nicotinamide nucleotide adenylyltransferase 3	protein-coding	4.64498356044041	4.59333036585321	4.60547207397048	3.67036749653043	5.93334052147044	6.0682520240437	5.07623293508441	5.14175581770611	1.41098287717761	0.000121268544537261	0.00355940094460725
Merged-chr14-10368323-2	chr14	10368223	10368423	+	588.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360141, intron 5 of 9)	intron (NM_001360141, intron 5 of 9)	85135.0	NM_001308286	14198.0	Mm.397619	NM_010210	ENSMUSG00000060579	Fhit	AW045638|Fra14A2	fragile histidine triad gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191194794-4	chr1	191194683	191194883	+	711.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11450.0	NM_007498	11910.0	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-34002787-4	chr13	34002631	34002831	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009068)	promoter-TSS (NM_009068)	63.0	NM_001243192	20719.0	Mm.252210	NM_009254	ENSMUSG00000060147	Serpinb6a	4930482L21Rik|D330015H01Rik|PI-6|Serpinb6|Spi3|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 6a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191910797-4	chr1	191910684	191910884	+	999.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009579, exon 2 of 2)	3' UTR (NM_009579, exon 2 of 2)	-3257.0	NR_030669	98736.0	Mm.379232	NM_001024489	ENSMUSG00000055833	1700034H15Rik	4930557M11Rik|BB016121	RIKEN cDNA 1700034H15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-101966997-3	chr5	101966891	101967091	+	795.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 5 of 66)	intron (NM_172882, intron 5 of 66)	102930.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171346264-4	chr1	171346168	171346368	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_012049)	promoter-TSS (NM_012049)	593.0	NM_011070	18637.0	Mm.10756	NM_011070	ENSMUSG00000006412	Pfdn2	ESTM27|W48336	prefoldin 2	protein-coding	5.18245595603317	4.96719324540028	4.72179557688931	4.39334507096826	5.7027419874269	5.63153303249887	5.41854423658965	4.52092855928275	0.63546336680745	0.0704850185870414	0.399407707654592
Merged-chr19-4111390-2	chr19	4111259	4111459	+	724.458374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008851, intron 17 of 22)	intron (NM_008851, intron 17 of 22)	10216.0	NM_001276284	11632.0	Mm.10433	NM_016666	ENSMUSG00000024847	Aip	AA408703|AW476050|Ara9|D19Bwg1412e|Fkbp16|Xap2	aryl-hydrocarbon receptor-interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80114224-2	chr10	80114124	80114324	+	820.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 1 of 4)	intron (NR_038088, intron 1 of 4)	-1579.0	NM_001301853	20869.0	Mm.44231	NM_011492	ENSMUSG00000003068	Stk11	AA408040|Lkb1|Par-4|R75140	serine/threonine kinase 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-52119299-5	chr14	52119149	52119349	+	900.7416380000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_023879, exon 4 of 25)	exon (NM_023879, exon 4 of 25)	8346.0	NM_023879	77945.0	Mm.21662	NM_023879	ENSMUSG00000057132	Rpgrip1	0610005A07Rik|4930401L23Rik|4930505G06Rik|A930002K18Rik|AA415034|nmf247	retinitis pigmentosa GTPase regulator interacting protein 1	protein-coding	4.6261127916036	3.57259386377689	4.31338030351005	4.34718055955014	3.53202161820489	4.76703163862542	3.57431978036325	3.63548744576431	-0.395920382095921	0.420014750832938	0.899680142727551
Merged-chr8-79443620-4	chr8	79443514	79443714	+	856.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44146.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-136032630-1	chr4	136032530	136032730	+	732.0	f1_balb.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-10981.0	NM_013736	27224.0	Mm.27663	NM_013736	ENSMUSG00000028668	Eloa	110kDa|AA408125|Tceb3|Tceb3a	elongin A	protein-coding	-0.0742802305435512	0.941379400036166	-0.0600357595031862	0.121780946732748	-0.0729455676500669	-0.0516628545504958	-0.0585217234941753	0.537761054518397	-1.22930474719429	0.579029135358797	1
Merged-chr4-86874295-4	chr4	86874180	86874380	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290541)	promoter-TSS (NM_001290541)	-134.0	NM_001290543	230379.0	Mm.45019	NM_139306	ENSMUSG00000038007	Acer2	2410116I05Rik|Asah3l|CRG-L1|maCER2	alkaline ceramidase 2	protein-coding	5.84488160381266	5.51137000401184	5.50206019287823	5.24790680181001	5.9493624112755	5.86484723140637	5.95987561307215	6.24467237651158	0.51976627969517	0.0390652724260167	0.281738952397138
Merged-chr1-162006269-3	chr1	162006148	162006348	+	909.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040562, intron 2 of 2)	intron (NR_040562, intron 2 of 2)	1279.0	NR_040562	72753.0	Mm.452125	NR_040562	ENSMUSG00000090260	2810442N19Rik	-	RIKEN cDNA 2810442N19 gene	ncRNA	1.24477070896606	0.531406010623073	0.51527562405662	0.502475957209767	0.86763561218357	2.12767939994852	0.518876531570098	1.22880169988846	2.24665471608722	0.160420767855668	0.620275578212741
Merged-chr3-57736992-3	chr3	57736868	57737068	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_130743, intron 1 of 9)	intron (NR_130743, intron 1 of 9)	911.0	NR_130743	24017.0	Mm.274360	NM_011883	ENSMUSG00000036503	Rnf13	2010001H16Rik|Rzf	ring finger protein 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116198918-6	chr11	116198843	116199043	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027107)	promoter-TSS (NM_027107)	88.0	NM_027107	69535.0	Mm.390347	NM_027107	ENSMUSG00000020778	Ten1	2310004N24Rik	TEN1 telomerase capping complex subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-62720972-4	chr1	62720895	62721095	+	904.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077404, intron 2 of 16)	intron (NM_001077404, intron 2 of 16)	17678.0	NM_001077407	18187.0	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-144769305-2	chr5	144769205	144769405	+	772.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081362, intron 1 of 70)	intron (NM_001081362, intron 1 of 70)	513.0	NM_001081362	100683.0	Mm.273570	NM_001081362	ENSMUSG00000045482	Trrap	AI481500	transformation/transcription domain-associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-84826970-4	chr2	84826853	84827053	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013899)	promoter-TSS (NM_013899)	-68.0	NM_013899	30059.0	Mm.21826	NM_013899	ENSMUSG00000027076	Timm10	Tim13|Timm13a	translocase of inner mitochondrial membrane 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99249977-2	chr15	99249877	99250077	+	652.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_016766, exon 3 of 15)	exon (NM_016766, exon 3 of 15)	-1811.0	NR_045627	73600.0	Mm.475134	NR_045627	ENSMUSG00000100599	1700120C14Rik	-	RIKEN cDNA 1700120C14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-89202361-4	chr9	89202294	89202494	+	931.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007534, intron 1 of 1)	intron (NM_007534, intron 1 of 1)	3121.0	NM_007534	12045.0	Mm.479217	NM_007534	ENSMUSG00000089929	Bcl2a1b	A1-b	B cell leukemia/lymphoma 2 related protein A1b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-29318766-3	chr17	29318669	29318869	+	986.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023734)	promoter-TSS (NM_023734)	-113.0	NM_023734	74116.0	Mm.30950	NM_023734	ENSMUSG00000024011	Pi16	1200009H11Rik|Cripi|PI-16	peptidase inhibitor 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-30125164-4	chr14	30125029	30125229	+	862.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083616, intron 11 of 46)	intron (NM_001083616, intron 11 of 46)	102496.0	NM_175343	218865.0	Mm.259916	NM_172264	ENSMUSG00000015970	Chdh	AU041472|D630034H06Rik	choline dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-38712986-3	chr6	38712886	38713086	+	727.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010433, intron 12 of 14)	ORR1D2|LTR|ERVL-MaLR	49917.0	NM_001101507	665180.0	Mm.349066	NM_001101507	ENSMUSG00000079598	Clec2l	AI414054|AW122724|Gm1064	C-type lectin domain family 2, member L	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-89825099-2	chr18	89824999	89825199	+	749.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55963.0	NM_001039173	623279.0	Mm.447164	NM_001039173	ENSMUSG00000073514	Dok6	Dok-6	docking protein 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-50527205-2	chr16	50527105	50527305	+	749.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_040380, intron 1 of 4)	RMER17C|LTR|ERVK	960.0	NR_040380	619312.0	Mm.427671	NR_040379		G730013B05Rik	linc-Cblb|linc1610	RIKEN cDNA G730013B05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167587122-2	chr2	167587022	167587222	+	832.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44883.0	NM_001311146	66589.0	Mm.278783	NM_023230	ENSMUSG00000078923	Ube2v1	0610011J09Rik|AI256840|CROC-1|CROC1|D7Bwg1382e|UEV-1	ubiquitin-conjugating enzyme E2 variant 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-101851086-2	chr5	101850986	101851186	+	718.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 60 of 66)	intron (NM_172882, intron 60 of 66)	85956.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-43679333-1	chr19	43679233	43679433	+	553.0	f0_balb.idr	Intergenic	Charlie2b|DNA|hAT-Charlie	4155.0	NR_045645	100502982.0	Mm.313570	NR_045645		BC037704	-	cDNA sequence BC037704	ncRNA	-2.18138529563533	-2.15523716995652	-2.1631445789866	-2.16963996020037	-2.05513010215571	-2.15352360143315	-2.16135451490766	-2.16847729006863	0.759018020146679	0.829933115115583	1
Merged-chr6-114456708-3	chr6	114456631	114456831	+	816.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252643, intron 2 of 2)	intron (NM_001252643, intron 2 of 2)	-1791.0	NM_001317124	15465.0	Mm.333327	NM_008285	ENSMUSG00000053004	Hrh1	Bphs|H1R|HH1R|Hir	histamine receptor H1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-17635664-4	chr6	17635582	17635782	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1328.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-119602410-2	chr13	119602310	119602510	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177666, intron 2 of 3)	intron (NM_001177666, intron 2 of 3)	-21409.0	NM_020279	56838.0	Mm.143745	NM_020279	ENSMUSG00000074715	Ccl28	CCK1|MEC|Scya28	chemokine (C-C motif) ligand 28	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-32245489-4	chr12	32245394	32245594	+	944.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	-36845.0	NM_001146200	30955.0	Mm.101369	NM_020272	ENSMUSG00000020573	Pik3cg	5830428L06Rik|PI3Kgamma|p110gamma	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-151981536-4	chr4	151981440	151981640	+	941.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172704, exon 16 of 16)	3' UTR (NM_172704, exon 16 of 16)	7446.0	NM_175152	69876.0	Mm.226820	NM_175152	ENSMUSG00000039759	Thap3	2010013E08Rik|2210418H06Rik	THAP domain containing, apoptosis associated protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-125649630-4	chr8	125649514	125649714	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20204.0	NM_028908	74393.0	Mm.41709	NM_028908	ENSMUSG00000050930	Map10	4933403G14Rik|AI835009|mKIAA1383	microtubule-associated protein 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-12264318-4	chr12	12264203	12264403	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146119, intron 1 of 11)	intron (NM_001146119, intron 1 of 11)	2164.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	4.68175568125818	4.30656006707135	4.54994014880676	3.77268227960415	4.50532919811781	4.45997850858125	3.99164569597133	4.85429993626592	0.149726888701357	0.715355115915088	0.998431161219273
Merged-chr17-31069394-2	chr17	31069293	31069493	+	740.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009593, intron 2 of 14)	intron (NM_009593, intron 2 of 14)	11699.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	0.258204951596589	0.912788439029136	0.283443502981085	0.274106071973758	0.260603544901456	1.07114158993261	1.59379146286966	0.275749889164843	2.20833086945846	0.247169527225833	0.746589446789374
Merged-chr17-24470849-1	chr17	24470749	24470949	+	721.0	f0_c57.idr	exon (NM_025954, exon 1 of 2)	exon (NM_025954, exon 1 of 2)	376.0	NM_025954	67078.0	Mm.28541	NM_025954	ENSMUSG00000043445	Pgp	1700012G19Rik|AI481330|AUM|G3PP	phosphoglycolate phosphatase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122941198-4	chr8	122941071	122941271	+	914.037476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 2 of 12)	RMER19C|LTR|ERVK	92797.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	1.33251093448057	1.49562409442114	0.922100443253252	1.63262150289321	1.34320844424667	0.940092121145726	1.6986108098028	1.74005295671548	0.361909342705952	0.776116727699709	0.998431161219273
Merged-chr5-102002848-2	chr5	102002749	102002949	+	565.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 3 of 66)	intron (NM_172882, intron 3 of 66)	67072.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0.0869734433504204	0.754459225117654	0.100927972905043	0.660763110963421	0.0882761587907302	0.766098619227822	0.102417782929499	0.0966165058911521	-0.842697306361983	0.695588293584574	1
Merged-chr18-70504327-4	chr18	70504210	70504410	+	866.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12476.0	NR_105775	102466152.0		NR_105775	ENSMUSG00000098721	Mir6357	Gm27333|mmu-mir-6357	microRNA 6357	ncRNA	4.39679220280018	3.98668945427746	4.36195290970502	4.44042946959822	3.96769164462964	4.29917743940073	4.33976351567815	4.10163646462752	-0.176661545065131	0.661857844069446	0.991056031673253
Merged-chr3-138134103-3	chr3	138133935	138134135	+	828.56665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001163457, exon 3 of 20)	exon (NM_001163457, exon 3 of 20)	-2382.0	NM_008642	17777.0	Mm.2941	NM_008642	ENSMUSG00000028158	Mttp	1810043K16Rik|MTP	microsomal triglyceride transfer protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-60694005-2	chr13	60693905	60694105	+	693.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	91794.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105700698-4	chr8	105700590	105700790	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286345)	promoter-TSS (NM_001286345)	-458.0	NM_001047436	56513.0	Mm.472753	NM_019695	ENSMUSG00000005699	Pard6a	0710008C04Rik|2610010A15Rik|PAR-6A|PAR6alpha|Par-6|Par6|Par6c|TAX40|Tip-40	par-6 family cell polarity regulator alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122441952-2	chr8	122441852	122442052	+	588.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_028354, intron 1 of 10)	L1MDa|LINE|L1	1470.0	NM_138656	192156.0	Mm.28146	NM_138656	ENSMUSG00000006517	Mvd	C78718|Mpd	mevalonate (diphospho) decarboxylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-106174866-3	chr1	106174772	106174972	+	935.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133821, intron 1 of 16)	intron (NM_133821, intron 1 of 16)	3003.0	NM_133821	98432.0	Mm.24115	NM_133821	ENSMUSG00000044340	Phlpp1	AI836256|Phlpp|Plekhe1|SCOP|mKIAA0606	PH domain and leucine rich repeat protein phosphatase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91842823-2	chr16	91842723	91842923	+	752.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110275, intron 19 of 28)	intron (NM_001110275, intron 19 of 28)	88807.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-78048602-4	chr18	78048499	78048699	+	973.6083369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001101038, exon 3 of 6)	exon (NM_001101038, exon 3 of 6)	8669.0	NM_001101038	620235.0	Mm.35607	NM_001101038	ENSMUSG00000091055	Siglec15	Cd33l3|EG620235|SIGLEC-I	sialic acid binding Ig-like lectin 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-34710477-4	chr13	34710381	34710581	+	903.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR11A2|LTR|ERVK	-29161.0	NM_138746	108161.0	Mm.41991	NM_138746	ENSMUSG00000038246	Fam50b	D0H6S2654E|X5L|XAP-5-like	family with sequence similarity 50, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-42897616-4	chr9	42897546	42897746	+	967.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175481, intron 1 of 20)	CpG	46725.0	NM_175481	110637.0	Mm.370291	NM_175481	ENSMUSG00000032017	Grik4	6330551K01Rik|GluK4|GluRgamma1|KA-1|KA1	glutamate receptor, ionotropic, kainate 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69679317-4	chr11	69679223	69679423	+	953.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030702, intron 2 of 10)	intron (NM_030702, intron 2 of 10)	2647.0	NM_030702	80886.0	Mm.284592	NM_030702	ENSMUSG00000005204	Senp3	AA408656|Smt3ip|Smt3ip1	SUMO/sentrin specific peptidase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-5066578-2	chr11	5066478	5066678	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1251.0	NM_001190406	78926.0	Mm.44591	NM_030228	ENSMUSG00000034201	Gas2l1	4930500E24Rik|D0Jmb1|Gar22|TU-71.1	growth arrest-specific 2 like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-98905990-1	chr7	98905890	98906090	+	767.0	f1_balb.idr	intron (NM_178635, intron 14 of 14)	intron (NM_178635, intron 14 of 14)	67145.0	NM_001285795	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-20724597-3	chr16	20724497	20724697	+	711.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001289896, exon 6 of 6)	3' UTR (NM_001289896, exon 6 of 6)	6001.0	NM_001289896	21832.0	Mm.3943	NM_009379	ENSMUSG00000022847	Thpo	Mgdf|Ml|Mpllg|Tpo	thrombopoietin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44862628-1	chr7	44862528	44862728	+	541.0	f1_balb.idr	TTS (NM_133949)	TTS (NM_133949)	5225.0	NM_001290767	59047.0	Mm.238254	NM_021549	ENSMUSG00000002963	Pnkp	1810009G08Rik|PNK	polynucleotide kinase 3'- phosphatase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-60376510-2	chr18	60376410	60376610	+	651.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021792, intron 2 of 2)	RMER17A|LTR|ERVK	481.0	NM_001146275	60440.0	Mm.261140	NM_021792	ENSMUSG00000054072	Iigp1	2900074L10Rik|AI046432|AW111922|Ifgga1|Iigp|Irga6	interferon inducible GTPase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-97964940-4	chr3	97964830	97965030	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033779, intron 1 of 1)	intron (NM_001033779, intron 1 of 1)	34757.0	NM_001033779	433632.0	Mm.212421	NM_001033779		Gm5544	EG433632	predicted gene 5544	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69040360-4	chr11	69040259	69040459	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-5278.0	NM_011496	20877.0	Mm.3488	NM_011496	ENSMUSG00000020897	Aurkb	AIM-1|AIRK2|AL022959|Aik2|Aim1|Ark2|AurB|IPL1|STK-1|Stk12|Stk5	aurora kinase B	protein-coding	4.58815083464119	4.03633259872947	4.28407286306858	4.17005682027072	4.58827392367356	2.77214571652144	4.00454317647026	4.64560915875555	-0.124531843488525	0.797828000098102	0.998431161219273
Merged-chr6-135198527-1	chr6	135198427	135198627	+	893.0	f1_balb.idr	intron (NM_001362111, intron 1 of 12)	intron (NM_001362111, intron 1 of 12)	427.0	NM_001362111	74525.0	Mm.34182	NM_028982	ENSMUSG00000030207	Fam234b	8430419L09Rik|mKIAA1467	family with sequence similarity 234, member B	protein-coding	1.91814648309207	2.02510726232704	1.95575677766865	1.90016597795303	2.13417631063068	1.23567472408321	1.45434037214077	2.76807524610159	0.307874292246723	0.764669095229511	0.998431161219273
Merged-chr4-149700183-1	chr4	149700083	149700283	+	748.0	f1_c57bl6.idr	intron (NM_001029837, intron 1 of 23)	intron (NM_001029837, intron 1 of 23)	1446.0	NM_001029837	18707.0	Mm.229108	NM_008840	ENSMUSG00000039936	Pik3cd	2410099E07Rik|2610208K16Rik|AW545373|p110delta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding	2.67150549003926	1.03168068935183	2.97496673622347	0.969843328390883	2.50361371054627	2.12293320228854	1.00521282756742	0.974767671281675	-0.851396903371653	0.72601699300007	0.998431161219273
Merged-chr8-70220626-1	chr8	70220526	70220726	+	809.0	f1_balb.idr	3' UTR (NM_133972, exon 8 of 8)	3' UTR (NM_133972, exon 8 of 8)	-8345.0	NM_001007570	73095.0	Mm.185413	NM_001007570	ENSMUSG00000002346	Slc25a42	2900084M01Rik	solute carrier family 25, member 42	protein-coding	0.321103975319627	0.347738489259084	0.339100811029704	0.33237944657137	0.625807033458107	0.743814781338068	1.08142406768758	1.20900152580328	4.48763544727302	0.0125730471074034	1
Merged-chr11-86582865-4	chr11	86582754	86582954	+	997.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	1304.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-90016669-4	chr7	90016572	90016772	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12487.0	NR_110365	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35544945-2	chr17	35544897	35545097	+	780.916687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355275, intron 1 of 1)	intron (NM_001355275, intron 1 of 1)	1896.0	NM_001355275	386463.0	Mm.426664	NM_001008424	ENSMUSG00000039518	Cdsn	AI747712	corneodesmosin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-45754401-1	chr2	45754301	45754501	+	581.0	f0_balb.idr	Intergenic	Intergenic	57796.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-37924420-4	chr18	37924301	37924501	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305981, intron 1 of 28)	intron (NM_001305981, intron 1 of 28)	11075.0	NM_001305981	13367.0	Mm.195916	NM_007858	ENSMUSG00000024456	Diaph1	D18Wsu154e|Dia1|Diap1|Drf1|p140mDia	diaphanous related formin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-165120526-4	chr1	165120430	165120630	+	974.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28600.0	NR_040480	75857.0	Mm.109021	NR_040480	ENSMUSG00000102408	4930568G15Rik	-	RIKEN cDNA 4930568G15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-107707883-3	chr7	107707768	107707968	+	930.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357438, intron 3 of 20)	intron (NM_001357438, intron 3 of 20)	16025.0	NM_001357438	19024.0	Mm.2817	NM_008905	ENSMUSG00000036528	Ppfibp2	Cclp1	PTPRF interacting protein, binding protein 2 (liprin beta 2)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-103007950-4	chr14	103007835	103008035	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045657, intron 2 of 2)	Lx10|LINE|L1	-25298.0	NM_177715	239217.0	Mm.246466	NM_177715	ENSMUSG00000098557	Kctd12	AU046135|AW538430|Pfet1|Pfetin	potassium channel tetramerisation domain containing 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-60837550-4	chr9	60837451	60837651	+	905.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357408, intron 1 of 19)	intron (NM_001357408, intron 1 of 19)	43109.0	NM_001357407	72565.0	Mm.68819	NM_028283	ENSMUSG00000034485	Uaca	2700059D02Rik|nucling	uveal autoantigen with coiled-coil domains and ankyrin repeats	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76072827-2	chr15	76072727	76072927	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164600, intron 4 of 10)	intron (NM_001164600, intron 4 of 10)	-3043.0	NM_001310542	105782.0	Mm.25568	NM_134089	ENSMUSG00000022568	Scrib	AI118201|CRIB|Crc|SCRIB1|Scrb1|mKIAA0147|vartul	scribbled planar cell polarity	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44453503-4	chr7	44453394	44453594	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198250, intron 2 of 2)	intron (NM_198250, intron 2 of 2)	11007.0	NM_198250	272381.0	Mm.44173	NM_198250	ENSMUSG00000047085	Lrrc4b	A830007M12|Lrig4	leucine rich repeat containing 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134898387-4	chr6	134898294	134898494	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001167696)	promoter-TSS (NM_001167696)	-200.0	NM_001362051	14760.0	Mm.4787	NM_008157	ENSMUSG00000032641	Gpr19	-	G protein-coupled receptor 19	protein-coding	4.57609884668433	4.30222431484921	4.02981162751787	4.47367437489594	4.74210943971353	3.87557556300577	4.42689022985273	4.53916469262878	0.0985534993790031	0.805657267817567	0.998431161219273
Merged-chr5-137288353-2	chr5	137288253	137288453	+	771.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290010)	promoter-TSS (NM_001290010)	99.0	NM_001290010	11423.0	Mm.255464	NM_009599	ENSMUSG00000023328	Ache	-	acetylcholinesterase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-77082631-2	chr10	77082531	77082731	+	590.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001109991, intron 5 of 40)	intron (NM_001109991, intron 5 of 40)	31074.0	NM_001109991	12822.0	Mm.4352	NM_009929	ENSMUSG00000001435	Col18a1	-	collagen, type XVIII, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-119305178-2	chr2	119305078	119305278	+	974.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16436.0	NM_172269	228545.0	Mm.294761	NM_172269	ENSMUSG00000034216	Vps18	9930024E13Rik	VPS18 CORVET/HOPS core subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-103962448-2	chr2	103962348	103962548	+	826.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001142337, intron 1 of 3)	intron (NM_001142337, intron 1 of 3)	4453.0	NM_001142337	16909.0	Mm.29266	NM_008505	ENSMUSG00000032698	Lmo2	Rbtn-2|Rbtn2|Rhom-2|Ttg2	LIM domain only 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133212596-4	chr4	133212480	133212680	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008154)	promoter-TSS (NM_008154)	-44.0	NM_008154	14748.0	Mm.4721	NM_008154	ENSMUSG00000049649	Gpr3	Gpcr20|Gpcr21|Gpcr3	G-protein coupled receptor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-119748172-2	chr8	119748072	119748272	+	583.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_026922, exon 17 of 27)	exon (NM_026922, exon 17 of 27)	30244.0	NM_028883	74347.0	Mm.358759	NM_028883	ENSMUSG00000034105	Tldc1	4632415K11Rik|Kiaa1609	TBC/LysM associated domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44499507-2	chr7	44499407	44499607	+	607.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357651, intron 2 of 3)	intron (NM_001357651, intron 2 of 3)	2919.0	NM_028169	75538.0	Mm.258841	NM_028169	ENSMUSG00000051113	Fam71e1	0610007G24Rik|1700021N13Rik|1700021P22Rik|GARI-L5	family with sequence similarity 71, member E1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19443625-3	chr7	19443522	19443722	+	857.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172279, intron 7 of 16)	intron (NM_172279, intron 7 of 16)	14872.0	NM_172279	232944.0	Mm.260504	NM_172279	ENSMUSG00000030397	Mark4	2410090P21Rik|C79806|Markl1	MAP/microtubule affinity regulating kinase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-142144295-2	chr4	142144195	142144395	+	591.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001109684, intron 5 of 6)	intron (NM_001109684, intron 5 of 6)	-59991.0	NM_145402	214359.0	Mm.27587	NM_145402	ENSMUSG00000040616	Tmem51	BC003277	transmembrane protein 51	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-84627291-1	chr16	84627191	84627391	+	570.5	f0_c57.idr	Intergenic	Intergenic	-52498.0	NR_040537	78023.0	Mm.243853	NR_040537		4930529L06Rik	-	RIKEN cDNA 4930529L06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-151876356-1	chr2	151876256	151876456	+	578.0	f0_balb.idr	Intergenic	Intergenic	33429.0	NM_001040689	228770.0	Mm.159868	NM_001040689	ENSMUSG00000032852	Rspo4	A730099F22|A930029K19Rik	R-spondin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-79584367-2	chr11	79584267	79584467	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6845.0	NM_175543	268451.0	Mm.130656	NM_175543	ENSMUSG00000017639	Rab11fip4	A730072L08Rik|RAB11-FIP4|mKIAA1821	RAB11 family interacting protein 4 (class II)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122460719-2	chr8	122460619	122460819	+	764.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013914)	promoter-TSS (NM_013914)	-27.0	NM_013914	30927.0	Mm.103673	NM_013914	ENSMUSG00000006587	Snai3	AI643946|Smuc|Zfp293	snail family zinc finger 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-96781449-2	chr11	96781349	96781549	+	606.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-3894.0	NM_001163389	74479.0	Mm.270781	NM_028965	ENSMUSG00000020876	Snx11	4933439F10Rik|A930041K09Rik|AI117694	sorting nexin 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-40446729-4	chr12	40446717	40446917	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	764.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99909476-2	chr15	99909376	99909576	+	857.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22182.0	NM_028180	72277.0	Mm.272766	NM_028180	ENSMUSG00000045350	1700030F18Rik	FAM186A	RIKEN cDNA 1700030F18 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-89580154-4	chr1	89580052	89580252	+	991.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037136, intron 1 of 16)	GC_rich|Low_complexity|Low_complexity	103740.0	NR_015540	74403.0	Mm.444291	NR_015540		4933400F21Rik	1700091C04Rik|4930565K10Rik	RIKEN cDNA 4933400F21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131974875-3	chr1	131974796	131974996	+	824.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145977, intron 1 of 4)	intron (NM_145977, intron 1 of 4)	4287.0	NM_145977	212980.0	Mm.200307	NM_145977	ENSMUSG00000026435	Slc45a3	2210413P12Rik|AU023994|AU043764|IPCA-6|PRST|Pcanap6	solute carrier family 45, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70897505-4	chr8	70897413	70897613	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029751)	promoter-TSS (NM_029751)	-70.0	NM_029751	76808.0	Mm.379251	NM_029751	ENSMUSG00000045128	Rpl18a	2510019J09Rik	ribosomal protein L18A	protein-coding	6.16731952535036	6.48162767494707	6.32919512709967	6.05056819876057	6.19258559478966	5.93961735220589	6.80618848609967	6.43010817778294	0.127061042330604	0.584982533007895	0.967268722441911
Merged-chr3-89773402-4	chr3	89773302	89773502	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027315)	promoter-TSS (NM_027315)	-2.0	NR_130957	74034.0	Mm.386816	NR_130957	ENSMUSG00000042579	4632404H12Rik	-	RIKEN cDNA 4632404H12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-139874625-3	chr6	139874526	139874726	+	658.888855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207683, intron 23 of 31)	intron (NM_207683, intron 23 of 31)	33181.0	NM_011084	18705.0	Mm.333471	NM_011084	ENSMUSG00000030228	Pik3c2g	C80387|PI3K-C2-gamma	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83414874-2	chr6	83414727	83414927	+	694.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347313, intron 3 of 11)	intron (NM_001347313, intron 3 of 11)	-13725.0	NR_105793	102465194.0		NR_105793	ENSMUSG00000099045	Mir6374	Gm27292|mmu-mir-6374	microRNA 6374	ncRNA	1.72427902260638	1.67851667138411	1.75514100383633	1.27010694713607	1.63400416487285	1.10601049875903	1.99214937544165	1.92843348044203	0.307510439799615	0.782963493212254	0.998431161219273
Merged-chr11-117954288-2	chr11	117954188	117954388	+	747.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15078.0	NM_007707	12702.0	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-26635746-4	chr19	26635652	26635852	+	863.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011416, intron 4 of 32)	intron (NM_011416, intron 4 of 32)	30592.0	NM_011416	67155.0	Mm.491146	NM_011416	ENSMUSG00000024921	Smarca2	2610209L14Rik|SNF2alpha|Snf2l2|brahma|brm	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-107844499-4	chr13	107844288	107844488	+	834.924988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 2 of 14)	intron (NM_145456, intron 2 of 14)	45676.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	0.415823494224299	0.126256777903698	0.117850130602651	0.111287411011099	0.76372128062947	0.128136824032062	1.25839137455354	0.112438875276501	2.91154750583459	0.163981853619565	1
Merged-chr9-119248164-4	chr9	119248049	119248249	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359582, intron 13 of 18)	intron (NM_001359582, intron 13 of 18)	-16457.0	NR_033303	109280.0	Mm.261557	NM_175420	ENSMUSG00000092212	Slc22a13b-ps	9330176C04Rik|Slc22a13b	solute carrier family 22 (organic cation transporter), member 13b, pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-74854350-2	chr17	74854250	74854450	+	701.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_152817, intron 16 of 19)	B4A|SINE|B4	136600.0	NM_152817	74196.0	Mm.209503	NM_152817	ENSMUSG00000024078	Ttc27	2610511O17Rik	tetratricopeptide repeat domain 27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-50841899-4	chr16	50841801	50842001	+	869.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58492.0	NR_131005	78639.0	Mm.160109	NR_131005	ENSMUSG00000092276	1700116B05Rik	-	RIKEN cDNA 1700116B05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-21994128-3	chr11	21994004	21994204	+	756.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011023)	TTS (NM_011023)	7547.0	NM_011023	18423.0	Mm.129663	NM_011023	ENSMUSG00000005917	Otx1	A730044F23Rik|jv	orthodenticle homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-23825950-2	chr14	23825850	23826050	+	800.599976	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253364, intron 1 of 27)	intron (NM_001253364, intron 1 of 27)	178255.0	NM_001253375	16531.0	Mm.343607	NM_010610	ENSMUSG00000063142	Kcnma1	5730414M22Rik|BKCa|MaxiK|Slo|Slo1|mSlo|mSlo1	potassium large conductance calcium-activated channel, subfamily M, alpha member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-16618026-8	chr1	16617925	16618125	+	985.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271016, intron 1 of 6)	intron (NM_001271016, intron 1 of 6)	1313.0	NM_025773	66799.0	Mm.122430	NM_025773	ENSMUSG00000025939	Ube2w	6130401J04Rik	ubiquitin-conjugating enzyme E2W (putative)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-29505780-3	chr19	29505671	29505871	+	807.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015567, intron 3 of 3)	ORR1D2|LTR|ERVL-MaLR	16216.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-80236467-2	chr18	80236368	80236568	+	755.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001136181, intron 2 of 4)	intron (NM_001136181, intron 2 of 4)	10634.0	NM_001136181	66255.0	Mm.272341	NM_001136181	ENSMUSG00000078963	Hsbp1l1	1810005K13Rik	heat shock factor binding protein 1-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-9393644-3	chr13	9393544	9393744	+	847.666626	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081426, intron 1 of 36)	intron (NM_001081426, intron 1 of 36)	117119.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-24817087-2	chr13	24816987	24817187	+	896.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_025790)	TTS (NM_025790)	14402.0	NM_025790	66834.0	Mm.2125	NM_025790	ENSMUSG00000006717	Acot13	0610006O17Rik|Them2	acyl-CoA thioesterase 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3804139-4	chr12	3804044	3804244	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-2836.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115235495-4	chr5	115235403	115235603	+	880.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026398)	promoter-TSS (NM_026398)	-348.0	NM_026398	117109.0	Mm.24636	NM_026398	ENSMUSG00000060152	Pop5	1500019J17Rik|2700077E03Rik|AW049989|Rnasep3	processing of precursor 5, ribonuclease P/MRP family (S. cerevisiae)	protein-coding	1.3090441978612	2.11521739219593	2.34248017545137	0.800327460176687	1.45412374389395	0.842961634153012	1.28009591089656	0.803306757511151	-2.11742836320134	0.115023246124111	0.531605896377922
Merged-chr7-96539290-6	chr7	96539177	96539377	+	861.555542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310762, intron 4 of 32)	L3|LINE|CR1	-197313.0	NR_046043	670727.0	Mm.421352	NR_046043	ENSMUSG00000085751	Gm15412	-	predicted gene 15412	ncRNA	2.74804837430451	1.14148143568853	2.15968718371079	1.97830499319572	2.41879188447018	1.14776510812686	2.05799257838451	1.09401803666408	-0.758975933440193	0.520500038190644	0.947641799425091
Merged-chr11-34700461-2	chr11	34700361	34700561	+	592.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_033374, intron 14 of 51)	intron (NM_033374, intron 14 of 51)	83444.0	NM_033374	94176.0	Mm.380679	NM_033374	ENSMUSG00000020143	Dock2	AI662014|AW122239|CED-5|Hch|MBC	dedicator of cyto-kinesis 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78303657-3	chr15	78303557	78303757	+	939.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001287389, intron 1 of 11)	intron (NM_001287389, intron 1 of 11)	2064.0	NM_007781	12984.0	Mm.1940	NM_007781	ENSMUSG00000071714	Csf2rb2	AIC2A|BetaIl3|Bil3|Csfgmrb|Il3r|Il3rb|Il3rb2	colony stimulating factor 2 receptor, beta 2, low-affinity (granulocyte-macrophage)	protein-coding	1.21260713316762	0.807728362724543	0.793820232168596	0.782912974346798	1.53198428903352	1.38670996457717	1.58108918256853	1.71375485879559	2.97013204540391	0.0417817274645878	0.292676137498624
Merged-chr1-161180846-4	chr1	161180745	161180945	+	752.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-21531.0	NM_001195189	100502590.0	Mm.449990	NM_001195189	ENSMUSG00000049160	Tex50	4930469G21Rik	testis expressed 50	protein-coding	2.62588323627821	3.38356976237038	3.03937546049998	1.46244329422317	3.11137982633217	2.28962279297376	3.14663607195326	2.30094087062075	-0.0401068950449121	0.960964183635019	0.998431161219273
Merged-chr8-26158132-4	chr8	26158016	26158216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199042)	promoter-TSS (NM_199042)	-53.0	NM_199042	73754.0	Mm.383241	NM_199042	ENSMUSG00000037214	Thap1	4833431A01Rik|AW490810	THAP domain containing, apoptosis associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153108511-4	chr2	153108395	153108595	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010407)	promoter-TSS (NM_010407)	27.0	NM_010407	15162.0	Mm.715	NM_010407	ENSMUSG00000003283	Hck	AI849071|Bmk	hemopoietic cell kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-18835694-4	chr2	18835585	18835785	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33867.0	NR_131254	66774.0	Mm.87075	NR_131254	ENSMUSG00000097638	Carlr	4933439G12Rik|Carl	cardiac and apoptosis-related long non-coding RNA	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-79020413-2	chr11	79020313	79020513	+	744.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_013571, exon 16 of 18)	exon (NM_013571, exon 16 of 18)	-3184.0	NR_045873	790910.0	Mm.440410	NR_045873		Gm11201	-	predicted gene 11201	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-61267115-2	chr19	61267015	61267215	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38697.0	NM_009970	12982.0	Mm.287228	NM_009970	ENSMUSG00000059326	Csf2ra	CD116|Csfgmra|GM-CSF-Ra|GM-CSFR	colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-68278685-2	chr10	68278585	68278785	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023598)	promoter-TSS (NM_023598)	41.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-59623499-4	chr1	59623403	59623603	+	834.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013771, intron 13 of 19)	intron (NM_001013771, intron 13 of 19)	47331.0	NM_009460	22218.0	Mm.362118	NM_009460	ENSMUSG00000026021	Sumo1	GMP1|PIC1|SENTRIN|SMT3|SMT3H3|SMTP3|SUMO-1|Smt3C|Ubl1	small ubiquitin-like modifier 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-44416403-4	chr19	44416302	44416502	+	962.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8693.0	NM_009127	20249.0	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	1.41375823968535	1.19998129944531	1.27316581745372	0.983959358418384	1.26192019020573	0.673732340091325	0.663200273360354	0.654129675122453	-1.80564007334967	0.241201751712077	0.737728541910355
Merged-chr10-99421025-1	chr10	99420925	99421125	+	541.0	f1_balb.idr	Intergenic	LTR16D|LTR|ERVL	157794.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-126399888-1	chr2	126399788	126399988	+	576.0	f1_c57bl6.idr	intron (NM_001359975, intron 12 of 27)	Tigger7|DNA|TcMar-Tigger	91665.0	NM_001080944	241633.0	Mm.222235	NM_001080944	ENSMUSG00000060131	Atp8b4	Im	ATPase, class I, type 8B, member 4	protein-coding	0.660556435329458	0.731117870657325	0.102252352924967	0.0975256175531756	0.672257579795056	0.109742940736313	0.103602033620558	0.098351992431966	-1.04394171839094	0.631116580104572	1
Merged-chr8-108780457-5	chr8	108780411	108780611	+	829.200012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007496, intron 1 of 9)	intron (NM_007496, intron 1 of 9)	65867.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	2.41858822698372	1.5260783630767	2.96420545416964	3.12883582559459	3.12943136723121	1.83637104107704	3.78923372991381	2.68968768960687	0.712510576336678	0.392560682492882	0.881258234308592
Merged-chr7-38141963-4	chr7	38141881	38142081	+	865.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34491.0	NM_007633	12447.0	Mm.16110	NM_007633	ENSMUSG00000002068	Ccne1	AW538188|CycE1	cyclin E1	protein-coding	4.0815634394688	2.80495094399956	2.96336130232145	2.62108373769627	3.40889263521054	4.10736954627829	3.10034630118347	2.31524549885992	0.1719506717184	0.802722898046564	0.998431161219273
Merged-chr13-37581633-3	chr13	37581516	37581716	+	657.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	236271.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	1.93416056866767	2.52623808583066	2.44081810103916	2.62841594400575	1.48747453414443	2.17935288676513	1.7892808440815	2.17029575914544	-1.17647800206276	0.190346173077192	0.669204937853139
Merged-chr16-91460247-2	chr16	91460147	91460347	+	713.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4857.0	NR_077219	100503120.0	Mm.387130	NR_077219	ENSMUSG00000084866	A930006K02Rik	-	RIKEN cDNA A930006K02 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-54963802-3	chr9	54963682	54963882	+	808.027771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-12828.0	NM_145229	246735.0	Mm.473773	NM_145229	ENSMUSG00000044820	AY074887	Mcpr1	cDNA sequence AY074887	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-42631778-1	chr19	42631678	42631878	+	544.0	f1_c57bl6.idr	Intergenic	Intergenic	-18972.0	NM_053083	67573.0	Mm.178767	NM_053083	ENSMUSG00000025185	Loxl4	4833426I20Rik|Loxc	lysyl oxidase-like 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-12371013-2	chr17	12370913	12371113	+	646.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2B|LINE|L1	-7596.0	NM_008877	18815.0	Mm.971	NM_008877	ENSMUSG00000059481	Plg	AI649309|Pg	plasminogen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114832745-2	chr11	114832645	114832845	+	842.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18787.0	NM_001110337	70355.0	Mm.242413	NM_147217	ENSMUSG00000051043	Gprc5c	1110028I06Rik|3200002M13Rik|Raig3	G protein-coupled receptor, family C, group 5, member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-59232220-2	chr11	59232120	59232320	+	592.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER21B|LTR|ERVL	-3953.0	NM_007476	11840.0	Mm.371546	NM_007476	ENSMUSG00000048076	Arf1	-	ADP-ribosylation factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128425785-2	chr2	128425685	128425885	+	597.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_028591, intron 1 of 1)	intron (NR_028591, intron 1 of 1)	3566.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-55283749-3	chr9	55283641	55283841	+	783.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_032002)	promoter-TSS (NM_032002)	-116.0	NM_032002	83961.0	Mm.443874	NM_032002	ENSMUSG00000032311	Nrg4	AI552600	neuregulin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-62093866-2	chr18	62093687	62093887	+	835.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	86194.0	NM_007420	11555.0	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	-0.213644874834764	-0.200645589258959	0.231757905572568	0.199710191663676	-0.212837745634685	0.281756492515914	-0.203978967669738	-0.207634354821054	-0.759162908123246	0.753906337555343	1
Merged-chr2-173595674-2	chr2	173595574	173595774	+	686.833374	f1_balb.idr|f1_c57bl6.idr	intron (NR_027957, intron 6 of 14)	intron (NR_027957, intron 6 of 14)	-17333.0	NM_027303	70065.0	Mm.425115	NM_027303	ENSMUSG00000027517	Ankrd60	1700019A24Rik|1700030G11Rik	ankyrin repeat domain 60	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-63151343-4	chr4	63151235	63151435	+	864.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007443, intron 3 of 9)	intron (NM_007443, intron 3 of 9)	2837.0	NM_007443	11699.0	Mm.2197	NM_007443	ENSMUSG00000028356	Ambp	AI194774|ASPI|HI-30|Intin4|Itil|UTI	alpha 1 microglobulin/bikunin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-33313844-4	chr14	33313737	33313937	+	872.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153800, intron 4 of 10)	intron (NM_153800, intron 4 of 10)	97014.0	NM_153800	239027.0	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-28601004-4	chr13	28600893	28601093	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045054, intron 6 of 7)	intron (NR_045054, intron 6 of 7)	109880.0	NR_105787	102466635.0		NR_105787	ENSMUSG00000099158	Mir6368	Gm27800|mmu-mir-6368	microRNA 6368	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-112255333-4	chr2	112255228	112255428	+	935.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172521, intron 2 of 6)	intron (NM_172521, intron 2 of 6)	3963.0	NM_172521	213765.0	Mm.78965	NM_172521	ENSMUSG00000041358	Nutm1	4932438M10|Nut	NUT midline carcinoma, family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-65071063-4	chr14	65070951	65071151	+	898.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360385, intron 2 of 5)	intron (NM_001360385, intron 2 of 5)	27055.0	NM_018788	54616.0	Mm.103748	NM_018788	ENSMUSG00000021978	Extl3	2900009G18Rik|AU040105|Ext1l|mKIAA0519	exostoses (multiple)-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-114689445-4	chr5	114689372	114689572	+	913.05835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019821, intron 1 of 4)	RSINE1|SINE|B4	1463.0	NM_019821	56356.0	Mm.275766	NM_019821	ENSMUSG00000011884	Gltp	1110001F24Rik|C76925|C77564	glycolipid transfer protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-108997290-2	chr9	108997190	108997390	+	680.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153430, intron 1 of 13)	intron (NR_153430, intron 1 of 13)	5388.0	NR_153430	270198.0	Mm.132391	NM_173019	ENSMUSG00000025648	Pfkfb4	C230090D14	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53115457-3	chr4	53115374	53115574	+	810.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 5 of 49)	intron (NM_013454, intron 5 of 49)	44421.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0.589606657523659	0.629657845930263	1.50797025986514	1.11704536685555	0.592179435808721	0.632524477679659	1.52353589320856	1.4622729414373	0.429904770788303	0.793099355022572	0.998431161219273
Merged-chr9-104764117-3	chr9	104763998	104764198	+	956.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028719, intron 2 of 15)	GA-rich|Low_complexity|Low_complexity	194615.0	NM_028719	74020.0	Mm.326240	NM_028719	ENSMUSG00000032564	Cpne4	3632411M23Rik|4933406O10Rik	copine IV	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117808360-4	chr10	117808291	117808491	+	826.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15686.0	NM_134010	103468.0	Mm.12568	NM_134010	ENSMUSG00000052798	Nup107	AW541137|C76801	nucleoporin 107	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124538972-4	chr5	124538892	124539092	+	897.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-1799.0	NM_019770	56334.0	Mm.325307	NM_019770	ENSMUSG00000029390	Tmed2	1110032D12Rik|1810020N21Rik|Rnp24|Sid394|p24beta1	transmembrane p24 trafficking protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-22970816-2	chr11	22970716	22970916	+	583.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144514, intron 1 of 2)	intron (NM_144514, intron 1 of 2)	-1189.0	NM_011663	22183.0	Mm.29542	NM_011663	ENSMUSG00000044068	Zrsr1	D11Ncvs75|Irlgs2|SP2|U2af1-rs1|U2afbp-rs	zinc finger (CCCH type), RNA binding motif and serine/arginine rich 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-45142793-4	chr16	45142709	45142909	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028756, intron 6 of 6)	intron (NM_028756, intron 6 of 6)	15864.0	NM_001356453	74102.0	Mm.264984	NM_028756	ENSMUSG00000022664	Slc35a5	1010001J06Rik|AU021179|BB097433|D16Ertd450e|D730043G07Rik	solute carrier family 35, member A5	protein-coding	3.98434940163691	4.20065038998677	4.68255392756324	3.3147921314886	4.65381349201427	5.73643486272629	4.71631735319647	5.21414390566063	1.26200717448029	0.00271542845474984	0.0422381727745315
Merged-chr2-75731296-4	chr2	75731209	75731409	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26646.0	NM_010902	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	6.80849067488237	6.56950151738768	6.74441770405766	6.80455390205038	6.90260474385188	7.07730835684104	6.96351644796987	6.956823093815	0.249509623041474	0.144342611772568	0.593767767787634
Merged-chr14-51132596-1	chr14	51132496	51132696	+	709.799988	f0_c57.idr	TTS (NM_001360117)	TTS (NM_001360117)	3532.0	NR_153407	78416.0	Mm.103835	NM_030098	ENSMUSG00000021880	Rnase6	9530043P15Rik|BB119466	ribonuclease, RNase A family, 6	protein-coding	1.91342996637073	1.5854907567952	1.79360296238535	2.32646672545729	1.54001964090003	0.959802756252053	0.939433353962656	0.921526926889571	-2.88037485389209	0.026816764096939	0.219273649910319
Merged-chr9-118726207-1	chr9	118726107	118726307	+	732.0	f1_balb.idr	intron (NM_001113514, intron 1 of 13)	intron (NM_001113514, intron 1 of 13)	14515.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-34022118-4	chr15	34022024	34022224	+	810.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60595.0	NM_001357926	67154.0	Mm.130883	NM_026002	ENSMUSG00000022255	Mtdh	2610103J23Rik|3D3|3D3/Lyric|AEG-1|AV353288|D8Bwg1112e|Lyric	metadherin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-40895230-3	chr19	40895157	40895357	+	983.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_106167)	TTS (NR_106167)	552.0	NM_028319	72672.0	Mm.313523	NM_028319	ENSMUSG00000049164	Zfp518a	2810401C22Rik|6330417C12Rik|AI426493|Zfp518|Znf518|Znf518a|mKIAA0335	zinc finger protein 518A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-111124934-3	chr5	111124819	111125019	+	918.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001267622, intron 5 of 22)	URR1A|DNA|hAT-Charlie	120775.0	NR_030482	735278.0		NR_030482	ENSMUSG00000076163	Mir701	Mirn701|mir-701|mmu-mir-701	microRNA 701	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-55504431-2	chr16	55504331	55504531	+	987.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9700.0	NR_039578	100628589.0		NR_039578	ENSMUSG00000093292	Mir5118	mmu-mir-5118|mu-mir-5118	microRNA 5118	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101912086-3	chr7	101911982	101912182	+	880.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_027053)	TTS (NM_027053)	-5723.0	NM_001081679	791260.0	Mm.475469	NM_001081679	ENSMUSG00000078630	Tomt	Comt2|F930017I19Rik	transmembrane O-methyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-8721068-2	chr10	8720968	8721168	+	565.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	165002.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-121884759-2	chr3	121884659	121884859	+	934.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER20|DNA|hAT-Charlie	-68470.0	NM_172525	214137.0	Mm.229287	NM_172525	ENSMUSG00000039831	Arhgap29	6720461J18Rik|A830014I19|AU040217|B130017I01Rik|C76601|Parg1	Rho GTPase activating protein 29	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52566345-2	chr13	52566245	52566445	+	623.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6880.0	NR_046069	100040572.0	Mm.278873	NR_046069		Gm2848	-	predicted gene 2848	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-17932051-4	chr2	17931954	17932154	+	986.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	64904.0	NM_026627	68231.0	Mm.23887	NM_026627	ENSMUSG00000062651	H2al2a	1700113O17Rik|H2A.Bbd|H2A.L.2|H2afb1|H2al2|TSEG-1|Tseg1	H2A histone family member L2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-35983278-4	chr16	35983158	35983358	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008465)	promoter-TSS (NM_008465)	-105.0	NM_008465	16646.0	Mm.3991	NM_008465	ENSMUSG00000022905	Kpna1	AW494490|IPOA5|NPI1|Rch2|mSRP1	karyopherin (importin) alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-34759442-6	chr18	34759292	34759492	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357456)	promoter-TSS (NM_001357456)	65.0	NM_001357457	66306.0	Mm.29424	NM_175104	ENSMUSG00000034300	Fam53c	2810012G03Rik|Gm21179	family with sequence similarity 53, member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119302037-2	chr11	119301937	119302137	+	911.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1994.0	NM_138669	192170.0	Mm.197555	NM_138669	ENSMUSG00000025580	Eif4a3	2400003O03Rik|Ddx48|eIF4A-III|mKIAA0111	eukaryotic translation initiation factor 4A3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-179976840-4	chr2	179976735	179976935	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033782)	promoter-TSS (NR_033782)	-18.0	NR_033782	66730.0	Mm.31773	NR_033782	ENSMUSG00000085704	4921531C22Rik	-	RIKEN cDNA 4921531C22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-8689730-4	chr11	8689647	8689847	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25212.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	5.30006255718925	5.28575619059546	5.51572500482509	4.83528703479451	5.85133068803533	5.89938342923218	6.24768022487953	6.0647377887109	0.86668388099437	0.00101608432489931	0.0197704313567687
Merged-chr11-83058936-4	chr11	83058824	83059024	+	960.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-6188.0	NM_011408	20556.0	Mm.278689	NM_011408	ENSMUSG00000072620	Slfn2	Shlf2	schlafen 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-4160555-4	chr12	4160463	4160663	+	994.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159537, intron 2 of 21)	intron (NM_001159537, intron 2 of 21)	26410.0	NM_138305	104111.0	Mm.489807	NM_138305	ENSMUSG00000020654	Adcy3	AC3|mKIAA0511	adenylate cyclase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-20048650-1	chr13	20048550	20048750	+	547.0	f1_c57bl6.idr	Intergenic	Intergenic	-41857.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	-0.543087610766539	-0.0567224448253634	-0.365541725432215	-0.129109029129516	-0.542439643086351	-0.531873131582054	-0.535326189633918	-0.538261738028578	-3.32040837711641	0.199073932292513	1
Merged-chr2-93435103-4	chr2	93435022	93435222	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271430, intron 2 of 8)	intron (NM_001271430, intron 2 of 8)	-13115.0	NR_105967	102465605.0		NR_105967	ENSMUSG00000099238	Mir7001	Gm27886|mmu-mir-7001	microRNA 7001	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-40662172-4	chr19	40662125	40662325	+	816.428589	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009848, intron 1 of 9)	intron (NM_009848, intron 1 of 9)	2455.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-192138662-3	chr1	192138568	192138768	+	876.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144814)	promoter-TSS (NM_144814)	-628.0	NM_001290282	214742.0	Mm.207457	NM_144814	ENSMUSG00000037395	Rcor3	4921514E24Rik|C730034D20Rik|E130101E15Rik	REST corepressor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-110448005-4	chr5	110447877	110448077	+	930.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001142642, exon 1 of 19)	exon (NM_001142642, exon 1 of 19)	526.0	NM_001317042	381668.0	Mm.348782	NM_028596	ENSMUSG00000043323	Fbrsl1	2410025L10Rik|AI467568|Gm1049|Gm29766|mKIAA1545	fibrosin-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-53433587-4	chr7	53433481	53433681	+	930.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	458308.0	NR_105746	102466619.0		NR_105746	ENSMUSG00000099176	Mir6238	Gm27982|mmu-mir-6238	microRNA 6238	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-103482417-3	chr8	103482328	103482528	+	753.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-121371.0	NR_045730	71058.0	Mm.67707	NR_045730	ENSMUSG00000110336	4933400L20Rik	-	RIKEN cDNA 4933400L20 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-38703573-2	chr6	38703473	38703673	+	683.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001294144, exon 13 of 15)	exon (NM_001294144, exon 13 of 15)	40504.0	NM_001101507	665180.0	Mm.349066	NM_001101507	ENSMUSG00000079598	Clec2l	AI414054|AW122724|Gm1064	C-type lectin domain family 2, member L	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-75695920-2	chr18	75695820	75696020	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_201354, intron 1 of 11)	intron (NM_201354, intron 1 of 11)	1776.0	NM_201354	269037.0	Mm.36745	NM_201354	ENSMUSG00000052928	Ctif	Gm672	CBP80/20-dependent translation initiation factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-62868378-3	chr14	62868307	62868507	+	858.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175546, intron 1 of 11)	intron (NM_175546, intron 1 of 11)	2865.0	NR_105860	102465311.0		NR_105860	ENSMUSG00000098858	Mir6541	Gm27311|mmu-mir-6541	microRNA 6541	ncRNA	0.165390040257362	0.526524337378044	-0.201477145068946	0.100250086867413	-0.210360112823211	-0.195630665824858	-0.200424876620447	-0.204515039062645	-3.77536142263051	0.102652660235033	1
Merged-chr10-19107987-4	chr10	19107909	19108109	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-33740.0	NR_038021	100504265.0	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	4.19032029903264	4.13894839145393	4.07138472963215	4.57191642056527	4.4715485254941	4.48136273872967	3.80549949594739	4.27162168494546	0.0340097278192627	0.934189782747151	0.998431161219273
Merged-chr16-93796690-2	chr16	93796590	93796790	+	858.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027293, intron 27 of 36)	intron (NM_027293, intron 27 of 36)	-1789.0	NR_151466	102633000.0	Mm.443436	NR_151466		2310043M15Rik	-	RIKEN cDNA 2310043M15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-137704453-3	chr6	137704348	137704548	+	955.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30634.0	NM_011499	20901.0	Mm.22584	NM_011499	ENSMUSG00000030224	Strap	AW557906|C78091|C79202|Unrip	serine/threonine kinase receptor associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-66868746-4	chr14	66868653	66868853	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009955)	promoter-TSS (NM_009955)	-97.0	NM_001034881	432870.0	Mm.425890	NM_001034881	ENSMUSG00000075553	Gm5464	EG432870	predicted gene 5464	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-165668002-2	chr1	165667902	165668102	+	656.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038846, intron 1 of 5)	intron (NM_001038846, intron 1 of 5)	-33461.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19129254-1	chr7	19129154	19129354	+	1000.0	f1_c57bl6.idr	intron (NM_175530, intron 1 of 1)	B4A|SINE|B4	9395.0	NM_175530	243867.0	Mm.230830	NM_175530	ENSMUSG00000050428	Fbxo46	20D7-FC4|4932704E22Rik|Fbxo34l	F-box protein 46	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-11459230-4	chr8	11459125	11459325	+	999.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011227, intron 1 of 1)	intron (NM_011227, intron 1 of 1)	-18704.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120818231-4	chr8	120818108	120818308	+	964.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	79569.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-9881090-4	chr3	9881023	9881223	+	943.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-47444.0	NM_001195031	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	3.93386797863026	4.80828871070701	4.24586582991422	4.2298919789074	3.63033541962547	2.6188017955752	2.69803583503496	2.897922879456	-1.86225930066885	0.000475395862834606	0.0107094681191334
Merged-chr6-17680370-2	chr6	17680270	17680470	+	728.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-13624.0	NM_001289626	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80116612-2	chr10	80116512	80116712	+	1000.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_126043, exon 1 of 11)	non-coding (NR_126043, exon 1 of 11)	809.0	NM_001301854	20869.0	Mm.44231	NM_011492	ENSMUSG00000003068	Stk11	AA408040|Lkb1|Par-4|R75140	serine/threonine kinase 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-82892212-2	chr11	82892112	82892312	+	569.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030224)	promoter-TSS (NM_030224)	67.0	NM_030224	78919.0	Mm.286733	NM_030224	ENSMUSG00000018844	Fndc8	4930466G16Rik	fibronectin type III domain containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-59136309-1	chr12	59136209	59136409	+	548.0	f1_balb.idr	intron (NM_001165253, intron 2 of 22)	B3|SINE|B2	4856.0	NM_001165253	338320.0	Mm.213215	NM_146034	ENSMUSG00000021000	Mia2	Ctage5|D12Bwg0579e|Mea6|Mgea|Mgea6	melanoma inhibitory activity 2	protein-coding	-1.13129152895393	-0.760314410582534	-1.11939102144509	-1.12796902636669	-1.1307976245896	-0.753160406462703	-1.11683883442949	-1.12699414366937	0.0387695613834025	0.99058038935327	1
Merged-chr16-21310974-4	chr16	21310909	21311109	+	997.392822	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14137.0	NR_046162	328646.0	Mm.404748	NR_046162	ENSMUSG00000096918	Gm16863	A830060N17	predicted gene, 16863	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-142530857-3	chr3	142530759	142530959	+	753.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083312, intron 1 of 10)	intron (NM_001083312, intron 1 of 10)	523.0	NM_145545	229900.0	Mm.45740	NM_145545	ENSMUSG00000040253	Gbp7	9830147J24Rik	guanylate binding protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-5009888-4	chr11	5009788	5009988	+	782.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001243043, intron 2 of 22)	intron (NM_001243043, intron 2 of 22)	23064.0	NM_001355660	11764.0	Mm.274816	NM_007454	ENSMUSG00000009090	Ap1b1	Adtb1|b2b1660Clo	adaptor protein complex AP-1, beta 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-31460781-4	chr15	31460698	31460898	+	954.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172606, intron 25 of 25)	intron (NM_172606, intron 25 of 25)	-7109.0	NM_145852	252967.0	Mm.436668	NM_145852	ENSMUSG00000022236	Ropn1l	ASP|AV047578|Akapasp	ropporin 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-47406346-2	chr19	47406246	47406446	+	723.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008018, intron 2 of 14)	intron (NM_008018, intron 2 of 14)	58065.0	NM_001164717	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-46552911-2	chr4	46552819	46553019	+	701.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164804, intron 2 of 11)	intron (NM_001164804, intron 2 of 11)	13521.0	NM_178893	107684.0	Mm.416311	NM_178893	ENSMUSG00000028337	Coro2a	9030208C03Rik|AI563590|IR10	coronin, actin binding protein 2A	protein-coding	1.91595782188591	2.34912471727811	2.09464973154534	3.46260187674872	2.22782175638907	2.99463468776455	1.39265139027239	3.47981481958296	0.236763654931075	0.792963481382435	0.998431161219273
Merged-chr5-38562388-2	chr5	38562288	38562488	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011715)	promoter-TSS (NM_011715)	-793.0	NM_011715	22388.0	Mm.2654	NM_011715	ENSMUSG00000005103	Wdr1	Aip1|D5Wsu185e|rede	WD repeat domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-27974827-4	chr15	27974762	27974962	+	832.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081302, intron 1 of 56)	intron (NM_001081302, intron 1 of 56)	50986.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5789270-2	chr19	5789170	5789370	+	681.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	6711.0	NR_144621	109146451.0		NR_144621		Mascrna	-	Malat1-associated small cytoplasmic RNA	scRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-103958362-4	chr2	103958264	103958464	+	905.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142337, intron 1 of 3)	L2b|LINE|L2	369.0	NM_001142337	16909.0	Mm.29266	NM_008505	ENSMUSG00000032698	Lmo2	Rbtn-2|Rbtn2|Rhom-2|Ttg2	LIM domain only 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120712940-2	chr11	120712840	120713040	+	945.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347612, intron 1 of 5)	intron (NM_001347612, intron 1 of 5)	827.0	NM_016665	20892.0	Mm.259716	NM_016665	ENSMUSG00000025144	Cenpx	Stra13	centromere protein X	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111486345-2	chr12	111486199	111486399	+	827.541626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033248)	promoter-TSS (NM_001033248)	-476.0	NM_001033248	212539.0	Mm.81916	NM_001033248	ENSMUSG00000010529	Gm266	-	predicted gene 266	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-86626388-2	chr11	86626288	86626488	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356531, intron 7 of 11)	B3|SINE|B2	-42230.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-72218869-3	chr8	72218711	72218911	+	770.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026455)	promoter-TSS (NM_026455)	-919.0	NM_026455	67922.0	Mm.28327	NM_026455	ENSMUSG00000003039	Fam32a	2510049I19Rik|AW822030|OTAG-12|Otag12	family with sequence similarity 32, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-69503833-4	chr12	69503725	69503925	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-28275.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	-2.18292257394068	-2.15545247547656	-2.03304972317742	-2.17058342868585	-2.18099422382073	-2.1536522739386	-2.16187909550322	-2.16936197735154	-0.683654500252594	0.846597994014493	1
Merged-chr7-19028977-2	chr7	19028877	19029077	+	613.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_026605, exon 2 of 27)	exon (NM_026605, exon 2 of 27)	4600.0	NM_026605	68188.0	Mm.130902	NM_026605	ENSMUSG00000023118	Sympk	1500016F02Rik|4632415H16Rik|AA125406|AI449890|SPK|SYM	symplekin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88504542-4	chr3	88504452	88504652	+	968.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1200.0	NM_001002011	16905.0	Mm.243014	NM_019390	ENSMUSG00000028063	Lmna	Dhe	lamin A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-53459673-4	chr3	53459577	53459777	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172501, intron 3 of 6)	intron (NM_172501, intron 3 of 6)	3581.0	NM_172501	212114.0	Mm.85744	NM_172501	ENSMUSG00000042997	Nhlrc3	4833441N19|8030451K01Rik|mKIAA4083	NHL repeat containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-151995782-2	chr4	151995682	151995882	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172705, intron 1 of 3)	CpG	397.0	NM_172705	230936.0	Mm.25582	NM_172705	ENSMUSG00000047777	Phf13	BC029632|Phf5|SPOC1	PHD finger protein 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-16227888-3	chr1	16227747	16227947	+	942.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_025303)	TTS (NM_025303)	121965.0	NM_133832	98711.0	Mm.274376	NM_133832	ENSMUSG00000025921	Rdh10	3110069K09Rik|4921506A21Rik|AI875664|AW549993|D1Ertd762e|m366Asp	retinol dehydrogenase 10 (all-trans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-12734717-4	chr18	12734590	12734790	+	894.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028341, intron 11 of 13)	intron (NM_028341, intron 11 of 13)	-6665.0	NM_181731	71132.0	Mm.179740	NM_027687	ENSMUSG00000024430	Cabyr	1700016C01Rik|4933421A18Rik|CBP86|FSP-2	calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-79985067-4	chr10	79984954	79985154	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001003949)	promoter-TSS (NM_001003949)	-794.0	NM_001003949	216157.0	Mm.29442	NM_001003949	ENSMUSG00000013858	Tmem259	AC087114.7gm2|ORF61|R32184_3|mFLJ00277	transmembrane protein 259	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-63545880-4	chr4	63545755	63545955	+	933.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024173, intron 1 of 2)	intron (NM_024173, intron 1 of 2)	1090.0	NM_024173	66290.0	Mm.371615	NM_024173	ENSMUSG00000039105	Atp6v1g1	1810024D14Rik|AA960677|ATP6J|Atp6g1|VAG1|Vma10	ATPase, H+ transporting, lysosomal V1 subunit G1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10577344-4	chr19	10577175	10577375	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302218)	promoter-TSS (NM_001302218)	111.0	NM_028411	72982.0	Mm.391194	NM_028411	ENSMUSG00000024666	Tmem138	1700113I01Rik|2900055D14Rik	transmembrane protein 138	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-162572249-1	chr1	162572149	162572349	+	671.0	f1_balb.idr	intron (NM_016796, intron 1 of 7)	intron (NM_016796, intron 1 of 7)	1421.0	NM_016796	53330.0	Mm.10699	NM_016796	ENSMUSG00000026696	Vamp4	D1Ertd147e|Vamp-4	vesicle-associated membrane protein 4	protein-coding	0.513891158808453	0.347670794125068	0.332303160064936	0.320083215092601	0.52090866667146	2.05446366167957	1.12757494176274	0.564737649493863	4.18696079100577	0.012209550720863	0.125491310293187
Merged-chr18-37849648-1	chr18	37849548	37849748	+	630.0	f0_balb.idr	intron (NM_007858, intron 26 of 26)	intron (NM_007858, intron 26 of 26)	5012.0	NR_105945	102465592.0		NR_105945	ENSMUSG00000098706	Mir6979	Gm27524|mmu-mir-6979	microRNA 6979	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-183197736-1	chr1	183197636	183197836	+	763.0	f0_balb.idr	intron (NM_001278218, intron 1 of 8)	intron (NM_001278218, intron 1 of 8)	23793.0	NM_026866	68897.0	Mm.327216	NM_026866	ENSMUSG00000030768	Disp1	1190008H24Rik|DispA	dispatched RND transporter family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-138262305-4	chr4	138262180	138262380	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001190978)	promoter-TSS (NM_001190978)	29.0	NM_010623	16559.0	Mm.271936	NM_010623	ENSMUSG00000028758	Kif17	5930435E01Rik|AW492270|Kif17b|mKIAA1405	kinesin family member 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-46325441-2	chr17	46325341	46325541	+	870.333374	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_145140, exon 1 of 20)	5' UTR (NM_145140, exon 1 of 20)	325.0	NM_145140	224814.0	Mm.76543	NM_145140	ENSMUSG00000032842	Abcc10	Mrp7|mFLJ00002	ATP-binding cassette, sub-family C (CFTR/MRP), member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36513639-2	chr18	36513534	36513734	+	954.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010415, intron 2 of 5)	intron (NM_010415, intron 2 of 5)	2171.0	NM_010415	15200.0	Mm.289681	NM_010415	ENSMUSG00000024486	Hbegf	AW047313|Dtr|Dts|Hegfl	heparin-binding EGF-like growth factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-29702630-1	chr2	29702530	29702730	+	543.0	f1_balb.idr	exon (NM_001039087, exon 10 of 26)	exon (NM_001039087, exon 10 of 26)	-58898.0	NM_001177392	433416.0	Mm.330112	NM_001034887	ENSMUSG00000075425	Gm13547	-	predicted gene 13547	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-75151487-2	chr8	75151387	75151587	+	981.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41978.0	NM_008566	17218.0	Mm.5048	NM_008566	ENSMUSG00000005410	Mcm5	AA617332|AI324988|AL033333|Cdc46|Mcmd5|P1-CDC46	minichromosome maintenance complex component 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-136128644-2	chr1	136128544	136128744	+	652.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_046169, intron 2 of 2)	intron (NR_046169, intron 2 of 2)	2539.0	NR_046170	329253.0	Mm.487858	NR_046167	ENSMUSG00000086264	Gm15850	6530439I21	predicted gene 15850	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-48585435-6	chr4	48585382	48585582	+	724.694458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001356272, exon 1 of 10)	exon (NM_001356272, exon 1 of 10)	308.0	NM_021436	230157.0	Mm.422686	NM_021436	ENSMUSG00000028347	Tmeff1	A830033E11|M7365|TR-1|Tr1	transmembrane protein with EGF-like and two follistatin-like domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-8518103-2	chr10	8518003	8518203	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177387, intron 1 of 7)	CpG	722.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-59484765-2	chr1	59484665	59484865	+	564.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008057, exon 1 of 1)	3' UTR (NM_008057, exon 1 of 1)	2618.0	NM_008057	14369.0	Mm.297906	NM_008057	ENSMUSG00000041075	Fzd7	Fz7	frizzled class receptor 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-36654780-2	chr16	36654680	36654880	+	787.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_019388, intron 1 of 7)	intron (NM_019388, intron 1 of 7)	11297.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-43555244-4	chr2	43555154	43555354	+	911.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289594)	promoter-TSS (NM_001289594)	-71.0	NM_001289593	70789.0	Mm.105278	NM_027552	ENSMUSG00000026866	Kynu	4432411A05Rik	kynureninase (L-kynurenine hydrolase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-98632288-2	chr15	98632188	98632388	+	639.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001044741)	promoter-TSS (NM_001044741)	-40.0	NM_001044741	12297.0	Mm.3544	NM_007581	ENSMUSG00000003352	Cacnb3	Beta3|CAB3|Ca(v)beta3|Cchb3	calcium channel, voltage-dependent, beta 3 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-40096022-3	chr10	40095934	40096134	+	894.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 1 of 5)	intron (NM_001114332, intron 1 of 5)	46220.0	NM_028247	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94928298-2	chr10	94928198	94928398	+	800.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_018797, intron 1 of 30)	intron (NM_018797, intron 1 of 30)	16280.0	NM_018797	54712.0	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-120405118-4	chr4	120405000	120405200	+	772.283325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159630)	promoter-TSS (NM_001159630)	-181.0	NM_001159630	29871.0	Mm.427014	NM_013883	ENSMUSG00000000085	Scmh1	AI315320|AI851618|Scml1|Scml3	sex comb on midleg homolog 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-123149093-4	chr7	123148995	123149195	+	718.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144925, intron 3 of 23)	intron (NM_144925, intron 3 of 23)	25210.0	NM_144925	233833.0	Mm.102305	NM_144925	ENSMUSG00000052707	Tnrc6a	2010321I05Rik|3110054G10Rik|AW557223|CAGH26|D130023A07Rik|GW182|Tnrc6	trinucleotide repeat containing 6a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-147036050-2	chr2	147035930	147036130	+	813.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356402, intron 13 of 28)	intron (NM_001356402, intron 13 of 28)	23031.0	NM_001356402	24128.0	Mm.3065	NM_011917	ENSMUSG00000027433	Xrn2	-	5'-3' exoribonuclease 2	protein-coding	0.394022010618387	0.427017366447396	1.46933152281697	0.604439091341881	0.396131877525832	0.429390713486067	1.0881077409658	1.14799549317329	-0.0223523460516529	0.989972992019467	0.998431161219273
Merged-chr13-54956234-3	chr13	54956108	54956308	+	885.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153131, intron 1 of 15)	CpG	6797.0	NM_001311128	107448.0	Mm.23573	NM_153131	ENSMUSG00000025876	Unc5a	Unc5h1|mKIAA1976	unc-5 netrin receptor A	protein-coding	0.69011952914163	0.526859063003016	2.27464460289139	1.69731464858268	1.04159363663157	0.530982096457231	0.512332712326406	0.495840315409284	-3.17072439026643	0.0503004576176569	0.326880198969073
Merged-chr1-105865863-5	chr1	105865739	105865939	+	697.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	85116.0	NM_009399	21934.0	Mm.6251	NM_009399	ENSMUSG00000026321	Tnfrsf11a	Ly109|ODFR|OFE|Rank|TRANCE-R|mRANK	tumor necrosis factor receptor superfamily, member 11a, NFKB activator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127197088-2	chr7	127196988	127197188	+	668.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_144522)	TTS (NM_144522)	-1011.0	NM_027353	70233.0	Mm.28050	NM_027353	ENSMUSG00000042502	Cd2bp2	1500011B02Rik|2410024K20Rik|AW048183	CD2 antigen (cytoplasmic tail) binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141360512-2	chr4	141360412	141360612	+	827.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7680.0	NM_001085513	277743.0	Mm.294614	NM_001085513	ENSMUSG00000006218	Fam131c	Gm693	family with sequence similarity 131, member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-140908802-4	chr7	140908718	140908918	+	976.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_015583)	TTS (NR_015583)	2754.0	NR_015583	212965.0	Mm.387212	NR_015583	ENSMUSG00000109628	BC024386	BC039766	cDNA sequence BC023486	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-102919854-2	chr7	102919754	102919954	+	910.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7776.0	NM_147089	259093.0	Mm.377837	NM_147089	ENSMUSG00000073963	Olfr572	MOR10-2	olfactory receptor 572	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-75026023-2	chr3	75025923	75026123	+	672.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	117749.0	NM_001310529	213234.0	Mm.80075	NM_172515	ENSMUSG00000034151	Zbbx	4931432L23	zinc finger, B-box domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-69887396-2	chr8	69887296	69887496	+	814.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026818)	promoter-TSS (NM_026818)	-4.0	NM_026818	68709.0	Mm.334584	NM_026818	ENSMUSG00000044006	Cilp2	1110031K21Rik|AA407300|CLIP-2	cartilage intermediate layer protein 2	protein-coding	0.417740134648002	0.783347093078639	0.161468196751834	0.322479068696952	0.297683185769203	0.794614124444672	0.162835441494654	0.157518326892829	-0.375310014113776	0.842501952103646	1
Merged-chr19-9984708-13	chr19	9984558	9984758	+	884.8012699999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011913)	TTS (NM_011913)	2012.0	NM_010239	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166493102-4	chr2	166493029	166493229	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45678.0	NR_015558	319684.0	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-103774882-2	chr5	103774782	103774982	+	714.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080798, intron 1 of 19)	intron (NM_001080798, intron 1 of 19)	20309.0	NM_001080798	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65021701-4	chr9	65021611	65021811	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021345)	promoter-TSS (NM_021345)	6.0	NM_021345	57874.0	Mm.308180	NM_021345	ENSMUSG00000033629	Hacd3	4930523M17Rik|AW742319|B-ind1|Hcad3|Hspc121|Ptplad1	3-hydroxyacyl-CoA dehydratase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-34305600-3	chr7	34305518	34305718	+	855.044434	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20009.0	NM_172741	233103.0	Mm.491097	NM_172741	ENSMUSG00000066571	4931406P16Rik	AA553327|mKIAA0355	RIKEN cDNA 4931406P16 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-154539924-2	chr2	154539824	154540024	+	684.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_009823)	TTS (NM_009823)	-8980.0	NM_029305	75480.0	Mm.440434	NM_029305	ENSMUSG00000038523	1700003F12Rik	-	RIKEN cDNA 1700003F12 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-6170535-4	chr7	6170470	6170670	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-1943.0	NM_028316	72667.0	Mm.274089	NM_028316	ENSMUSG00000044876	Zfp444	2810031J10Rik|6230401O10Rik|mFLJ00134	zinc finger protein 444	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-125123451-4	chr4	125123364	125123564	+	830.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153159, intron 2 of 5)	intron (NM_153159, intron 2 of 5)	4417.0	NM_153159	230738.0	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128301634-1	chr10	128301534	128301734	+	744.5	f1_c57bl6.idr	Intergenic	Intergenic	-1701.0	NM_133992	103135.0	Mm.244183	NM_133992	ENSMUSG00000005682	Pan2	1200014O24Rik|AI047843|AW742773|Usp52|mKIAA0710	PAN2 poly(A) specific ribonuclease subunit	protein-coding	-0.662826441749988	-1.00555184936033	-1.01675512286785	-1.01992432642343	-0.654846858003193	-1.00312405325568	-1.01421894731451	-1.01959449741028	0.0418081237259606	0.989738874530268	1
Merged-chr6-116014334-4	chr6	116014236	116014436	+	791.69165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19331.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-118584669-3	chr7	118584587	118584787	+	899.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172476)	promoter-TSS (NM_172476)	-1.0	NM_172476	209760.0	Mm.69380	NM_172476	ENSMUSG00000042246	Tmc7	1700030H01Rik|C230064B05|C630024K23Rik	transmembrane channel-like gene family 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-75215864-2	chr10	75215764	75215964	+	603.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145826, intron 1 of 18)	intron (NM_001145826, intron 1 of 18)	3474.0	NM_001145826	74392.0	Mm.27716	NM_153406	ENSMUSG00000033444	Specc1l	4930470P14Rik|4932439K10Rik|9530057A13Rik|AI317249|Cytsa|mKIAA0376	sperm antigen with calponin homology and coiled-coil domains 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-40084584-4	chr1	40084458	40084658	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360801)	promoter-TSS (NM_001360801)	-156.0	NM_010555	16178.0	Mm.1349	NM_010555	ENSMUSG00000026073	Il1r2	CD121b|Il1r-2	interleukin 1 receptor, type II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-25510798-4	chr9	25510703	25510903	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 2 of 7)	intron (NM_026189, intron 2 of 7)	29206.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-12520230-3	chr13	12520129	12520329	+	945.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_133643, exon 1 of 6)	5' UTR (NM_133643, exon 1 of 6)	221.0	NM_133643	171211.0	Mm.159671	NM_133643	ENSMUSG00000095105	Edaradd	1810032E07Rik|5830469M23Rik|A630043P06|cr	EDAR (ectodysplasin-A receptor)-associated death domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-73741988-3	chr15	73741850	73742050	+	948.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166388, intron 1 of 5)	intron (NM_001166388, intron 1 of 5)	-6076.0	NM_008975	19245.0	Mm.390807	NM_008975	ENSMUSG00000059895	Ptp4a3	AV088979|Prl-3|pPtp4a3	protein tyrosine phosphatase 4a3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-80268190-2	chr2	80268090	80268290	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24280.0	NM_177256	320769.0	Mm.60992	NM_177256	ENSMUSG00000050114	Prdx6b	1-cysPrx-P1|4930414C22Rik|Aop2-rs1|Prdx5-rs1|Prdx6-ps1|Prdx6-rs1|Prdx6-rs1-ps	peroxiredoxin 6B	protein-coding	-0.113508060696293	-0.0990798439697061	0.338367128083263	-0.10746455587086	0.44168723106635	-0.0980107465787035	0.347606073776281	-0.106827679214733	1.24220898972082	0.596962704015203	1
Merged-chr3-37728398-4	chr3	37728374	37728574	+	861.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4114.0	NM_198657	381438.0	Mm.490549	NM_198657	ENSMUSG00000058174	Gm5148	EG381438	predicted gene 5148	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70505870-2	chr8	70505789	70505989	+	722.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_025577, exon 3 of 5)	exon (NM_025577, exon 3 of 5)	537.0	NR_151646	66462.0	Mm.28242	NM_025577	ENSMUSG00000058833	Rex1bd	2810428I15Rik	required for excision 1-B domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-61875479-4	chr8	61875364	61875564	+	980.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293772, intron 2 of 21)	intron (NM_001293772, intron 2 of 21)	27226.0	NM_001081390	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96558407-3	chr3	96558310	96558510	+	897.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_023719, exon 1 of 8)	exon (NM_023719, exon 1 of 8)	453.0	NM_001009935	56338.0	Mm.410189	NM_023719	ENSMUSG00000038393	Txnip	1200008J08Rik|AA682105|Hyplip1|THIF|Tbp-2|VDUP1	thioredoxin interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-8872220-2	chr19	8872120	8872320	+	722.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001362044, exon 4 of 9)	exon (NM_001362044, exon 4 of 9)	672.0	NM_001362044	225896.0	Mm.27839	NM_146093	ENSMUSG00000071655	Ubxn1	2B28|4930455J02Rik|D19Ertd721e|T25529|mY33K	UBX domain protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-84665545-2	chr7	84665454	84665654	+	641.5	f0_balb.idr|f1_c57bl6.idr	intron (NM_001360577, intron 1 of 7)	intron (NM_001360577, intron 1 of 7)	13842.0	NM_022985	65098.0	Mm.209349	NM_022985	ENSMUSG00000030629	Zfand6	3110005P07Rik|Awp1|Za20d3	zinc finger, AN1-type domain 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-89540673-1	chr13	89540573	89540773	+	550.0	f1_c57bl6.idr	promoter-TSS (NM_013500)	promoter-TSS (NM_013500)	37.0	NM_013500	12950.0	Mm.266790	NM_013500	ENSMUSG00000021613	Hapln1	BB099155|CLP|Crtl1|Crtl1l|LP|LP-1	hyaluronan and proteoglycan link protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-100835824-2	chr6	100835724	100835924	+	789.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_182939, intron 2 of 8)	intron (NM_182939, intron 2 of 8)	2186.0	NM_182939	232314.0	Mm.27223	NM_182939	ENSMUSG00000052144	Ppp4r2	BE691708|C230060M08Rik	protein phosphatase 4, regulatory subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-88508712-4	chr5	88508633	88508833	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19164.0	NM_152839	16069.0	Mm.1192	NM_152839	ENSMUSG00000067149	Jchain	9530090F24Rik|AI323815|Igj|Jch	immunoglobulin joining chain	protein-coding	4.9554319407025	5.40529651037895	4.5887318399023	4.30665679290456	4.99113436060221	5.46928461457229	4.62253507674453	4.32835940142014	0.0520036359542988	0.892614288684777	0.998431161219273
Merged-chr5-123173113-2	chr5	123173013	123173213	+	654.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_008277, intron 12 of 13)	B4A|SINE|B4	9610.0	NM_008277	15445.0	Mm.439709	NM_008277	ENSMUSG00000029445	Hpd	4HPPD|Fla|Flp|Hppd|Laf	4-hydroxyphenylpyruvic acid dioxygenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-146782949-2	chr5	146782849	146783049	+	592.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011669, intron 1 of 8)	intron (NM_011669, intron 1 of 8)	12007.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-24516981-3	chr9	24516871	24517071	+	949.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13831.0	NM_172920	244745.0	Mm.38526	NM_172920	ENSMUSG00000043067	Dpy19l1	1100001I19Rik|6030402K12|AI225861|AW558481	dpy-19-like 1 (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-21467196-3	chr19	21467098	21467298	+	691.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010266, intron 1 of 13)	intron (NM_010266, intron 1 of 13)	5463.0	NM_010266	14544.0	Mm.45054	NM_010266	ENSMUSG00000058624	Gda	AU015411|AW047581|GAH	guanine deaminase	protein-coding	-0.240169481955788	0.689337262229696	-0.227121902276282	-0.231995123935526	-0.238946639797669	0.479093659243128	-0.225735590711415	-0.231141084245056	-0.558157412577905	0.821447147438224	1
Merged-chr4-154139708-2	chr4	154139608	154139808	+	789.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_011642, intron 1 of 13)	CpG	500.0	NM_011642	22062.0	Mm.78015	NM_011642	ENSMUSG00000029026	Trp73	TAp73|Tp73|deltaNp73|p73	transformation related protein 73	protein-coding	2.48282155047869	2.77611857920502	2.57744498717376	2.39119202832302	2.67951211540913	2.25924135254615	3.05828427868789	2.27277309988074	0.116656868305877	0.876589262229363	0.998431161219273
Merged-chr9-124014367-1	chr9	124014267	124014467	+	878.6666869999999	f0_balb.idr	Intergenic	Intergenic	-7604.0	NM_009914	12771.0	Mm.57050	NM_009914	ENSMUSG00000035448	Ccr3	CC-CKR3|CKR3|Cmkbr1l2|Cmkbr3	chemokine (C-C motif) receptor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3069580-2	chr4	3069480	3069680	+	914.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-102503.0	NM_001167534	100312470.0	Mm.480297	NM_001167534	ENSMUSG00000115072	Vmn1r2	Gm11776	vomeronasal 1 receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-41519326-5	chr10	41519225	41519425	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016898)	promoter-TSS (NM_016898)	-175.0	NM_016898	53599.0	Mm.269815	NM_016898	ENSMUSG00000019818	Cd164	A115|A24|AA589639|AW540279|MGC-24|MSSP	CD164 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-81024743-4	chr13	81024645	81024845	+	957.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015587, intron 1 of 1)	IAPEY3-int|LTR|ERVK	60671.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-54771897-2	chr14	54771794	54771994	+	629.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016972, intron 1 of 10)	(CA)n|Simple_repeat|Simple_repeat	9992.0	NM_016972	50934.0	Mm.276831	NM_016972	ENSMUSG00000022180	Slc7a8	AA408822|LAT2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	protein-coding	-0.758604916710805	-0.881510999585754	-0.888160599081844	-0.890158287924046	-0.635773171357596	-0.87895920820787	-0.8875879482114	-0.480323219167976	1.93864606206767	0.500989653978189	1
Merged-chr10-108099056-4	chr10	108098955	108099155	+	946.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63345.0	NM_027892	17931.0	Mm.422959	NM_027892	ENSMUSG00000019907	Ppp1r12a	1200015F06Rik|5730577I22Rik|AA792106|AV099298|D10Ertd625e|Mypt1	protein phosphatase 1, regulatory (inhibitor) subunit 12A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-155630666-1	chr2	155630566	155630766	+	709.0	f1_c57bl6.idr	intron (NM_001085378, intron 31 of 41)	intron (NM_001085378, intron 31 of 41)	7786.0	NR_030757	735275.0		NR_030757	ENSMUSG00000076312	Mir499	Mirn499|mir-499|mmu-mir-499	microRNA 499	ncRNA	2.92027054631317	2.74038656088156	1.05463867850782	2.78453799345075	0.978210209208251	1.10033749265527	1.06310519618199	2.57042370280253	-1.98595975105855	0.383088057922052	0.873930254585267
Merged-chr16-95614695-2	chr16	95614595	95614795	+	851.3333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-28102.0	NM_001302152	13876.0	Mm.164531	NM_133659	ENSMUSG00000040732	Erg	D030036I24Rik	ETS transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-51917246-4	chr11	51917165	51917365	+	944.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-50366.0	NM_029976	52626.0	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	1.59271117969825	2.40539365717044	1.1143574706944	2.05589419873842	1.60599502163583	2.42445581878919	1.12009179333274	2.06722448014398	0.0362169530727272	0.974374395350394	0.998431161219273
Merged-chr2-29003611-2	chr2	29003511	29003711	+	622.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166705, intron 1 of 5)	intron (NM_001166705, intron 1 of 5)	51455.0	NM_001166705	329375.0	Mm.425079	NM_001085514	ENSMUSG00000079502	Cfap77	1700101E01Rik|Gm823	cilia and flagella associated protein 77	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167374006-2	chr2	167373900	167374100	+	555.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24822.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-46680340-4	chr17	46680270	46680470	+	967.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_102392)	promoter-TSS (NR_102392)	-83.0	NM_001277310	17256.0	Mm.329083	NM_010787	ENSMUSG00000002768	Mea1	Mea-1	male enhanced antigen 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-36857026-1	chr15	36856926	36857126	+	541.0	f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-60097.0	NM_001253806	22631.0	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-36658616-2	chr16	36658516	36658716	+	542.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019388, intron 1 of 7)	L1MD2|LINE|L1	7461.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-39420035-4	chr10	39419937	39420137	+	983.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122892, intron 2 of 12)	intron (NM_001122892, intron 2 of 12)	50238.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-13964674-4	chr8	13964573	13964773	+	975.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361630, intron 2 of 3)	intron (NM_001361630, intron 2 of 3)	10104.0	NM_173744	72148.0	Mm.5727	NM_173744	ENSMUSG00000050052	Tdrp	2610019F03Rik	testis development related protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-51372931-4	chr2	51372835	51373035	+	974.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	64965.0	NR_130155	73375.0	Mm.396227	NR_130155	ENSMUSG00000086007	1700057H21Rik	-	RIKEN cDNA 1700057H21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-43672605-4	chr10	43672499	43672699	+	940.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73559.0	NR_040581	69443.0	Mm.484042	NR_040581	ENSMUSG00000111422	1700027J07Rik	-	RIKEN cDNA 1700027J07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-45595361-6	chr17	45595198	45595398	+	997.4722289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357771, intron 1 of 13)	intron (NM_001357771, intron 1 of 13)	274.0	NM_001199116	63959.0	Mm.29744	NM_022880	ENSMUSG00000023942	Slc29a1	1200014D21Rik|AA407560|ENT1	solute carrier family 29 (nucleoside transporters), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167336827-2	chr2	167336727	167336927	+	631.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019835, intron 1 of 8)	intron (NM_019835, intron 1 of 8)	12351.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-16302542-2	chr16	16302442	16302642	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_038046)	promoter-TSS (NR_038046)	-423.0	NR_038046	70120.0	Mm.37486	NM_198246	ENSMUSG00000022792	Yars2	2210023C10Rik|tyrRS	tyrosyl-tRNA synthetase 2 (mitochondrial)	protein-coding	4.31789893549146	3.3563306714398	4.09181059473179	4.48552364523227	4.35039925946178	3.38273934002839	4.12243731353994	4.50618286682475	0.036905655574031	0.937380718987772	0.998431161219273
Merged-chr19-4793990-4	chr19	4793893	4794093	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290122)	promoter-TSS (NM_001290122)	16.0	NM_001290124	19653.0	Mm.426069	NM_009032	ENSMUSG00000094936	Rbm4	4921506I22Rik|Lark1|Mlark|Rbm4a|lark	RNA binding motif protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-77964192-4	chr10	77964096	77964296	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138301, intron 4 of 33)	intron (NM_138301, intron 4 of 33)	5676.0	NM_138301	28240.0	Mm.276762	NM_138301	ENSMUSG00000009292	Trpm2	9830168K16Rik|C79133|LTRPC2|TRPC7|Trp7|Trrp7	transient receptor potential cation channel, subfamily M, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-29391445-4	chr19	29391350	29391550	+	976.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19469.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84689226-4	chr8	84689091	84689291	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164560)	promoter-TSS (NM_001164560)	-56.0	NM_001164559	212528.0	Mm.275720	NM_198020	ENSMUSG00000001909	Trmt1	6720406L13Rik|6720477L24|D8Ertd812e	tRNA methyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99122634-7	chr15	99122550	99122750	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-4195.0	NM_139140	72572.0	Mm.276650	NM_139140	ENSMUSG00000051934	Spats2	2700012F11Rik|59kDa|Scr59|p59	spermatogenesis associated, serine-rich 2	protein-coding	2.25619885485089	1.36049890818035	2.22601190114419	2.1635656022204	2.59346425563475	2.02788760595507	1.79004390698844	2.79389445803353	0.754216446482255	0.418238942266163	0.898108369402713
Merged-chr4-41614327-4	chr4	41614236	41614436	+	920.56665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175138, exon 11 of 20)	exon (NM_175138, exon 11 of 20)	25966.0	NM_027147	69638.0	Mm.372459	NM_027147	ENSMUSG00000028445	Enho	1110065P19Rik|2310040A07Rik	energy homeostasis associated	protein-coding	1.58847022285295	2.41498382140445	1.86117592229847	2.17174427898232	2.17141886846122	2.21247582843805	1.87468209259345	1.66703276348356	-0.122861838244302	0.89603939675726	0.998431161219273
Merged-chr1-34602586-3	chr1	34602465	34602665	+	633.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22872.0	NM_213727	211383.0	Mm.330696	NM_213727	ENSMUSG00000045174	Amer3	9430069J07Rik|Fam123c	APC membrane recruitment 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-31220695-4	chr5	31220614	31220814	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008014)	promoter-TSS (NM_008014)	-169.0	NM_008014	14208.0	Mm.14501	NM_008014	ENSMUSG00000029147	Ppm1g	AI385652|Fin13	protein phosphatase 1G (formerly 2C), magnesium-dependent, gamma isoform	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-5409886-4	chr5	5409803	5410003	+	886.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER45B|DNA|hAT-Tip100	-29652.0	NM_011074	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-105139393-4	chr9	105139308	105139508	+	924.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5674.0	NM_028562	73532.0	Mm.23516	NM_028562	ENSMUSG00000032566	1700080E11Rik	AI429110|Tseg8	RIKEN cDNA 1700080E11 gene	protein-coding	1.40612964976031	0.998579124468896	1.76984373851875	1.33655802248635	1.73271920541605	1.00231358867091	1.78477502625244	1.91902239264869	0.844462979352294	0.490259816439909	0.934345795476137
Merged-chr7-100176504-4	chr7	100176397	100176597	+	993.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001190869)	promoter-TSS (NM_001190869)	-173.0	NM_001190869	57442.0	Mm.282386	NM_020574	ENSMUSG00000035165	Kcne3	2210017H05Rik|MiRP2	potassium voltage-gated channel, Isk-related subfamily, gene 3	protein-coding	3.37670158514035	1.51114986694432	2.3438950117311	3.38496584662028	3.35210170388112	2.27380188693766	1.75840675610747	3.27549019792612	-0.0643879344394188	0.940972974854304	0.998431161219273
Merged-chr13-21710141-4	chr13	21710051	21710251	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5992.0	NM_178199	319185.0		NM_178199	ENSMUSG00000094338	Hist1h2bl	H2b-291a	histone cluster 1, H2bl	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-18241072-2	chr15	18240972	18241172	+	627.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045711, intron 7 of 11)	L1_Mus1|LINE|L1	128555.0	NR_045711	70886.0	Mm.399021	NR_045711	ENSMUSG00000098150	4921515E04Rik	-	RIKEN cDNA 4921515E04 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-170120548-2	chr2	170120448	170120648	+	720.25	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001159683, exon 3 of 7)	5' UTR (NM_001159683, exon 3 of 7)	10672.0	NM_001033299	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-92484931-2	chr13	92484831	92485031	+	775.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163627)	promoter-TSS (NM_001163627)	-900.0	NM_001163627	73942.0	Mm.85935	NM_001163627	ENSMUSG00000034334	Fam151b	4930405M20Rik	family with sequence similarity 151, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-56765440-2	chr13	56765329	56765529	+	885.7333369999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61761.0	NM_001164042	17129.0	Mm.272920	NM_008541	ENSMUSG00000021540	Smad5	1110051M15Rik|AI451355|Dwf-C|Madh5|MusMLP	SMAD family member 5	protein-coding	-0.300813073236427	-0.0723829618258883	-0.235800015014626	-0.548826536950312	-0.552409457937614	-0.542216144054769	-0.545550175021099	-0.54838231004629	-3.27908107855375	0.205245579624651	1
Merged-chr4-95846582-3	chr4	95846487	95846687	+	760.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113412, intron 13 of 15)	intron (NM_001113412, intron 13 of 15)	120448.0	NR_045777	319247.0	Mm.473527	NM_175680	ENSMUSG00000044125	9530080O11Rik	-	RIKEN cDNA 9530080O11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-61737627-2	chr14	61737491	61737691	+	603.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55218.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	0.247441928531451	0.499584279932773	1.38292033207798	0.871834835657837	0.249256924977631	0.277989625723591	0.652449985252806	0.260806463048517	-2.7591113669101	0.149034459146295	1
Merged-chr4-155694266-3	chr4	155694162	155694362	+	942.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178699)	promoter-TSS (NM_178699)	-80.0	NM_178699	230991.0	Mm.29083	NM_178699	ENSMUSG00000074738	Fndc10	B930041F14Rik|MNCb-3966	fibronectin type III domain containing 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-23305913-4	chr16	23305808	23306008	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252506, intron 1 of 6)	intron (NM_001252506, intron 1 of 6)	15438.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21716429-2	chr9	21716329	21716529	+	818.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-7147.0	NM_001252658	16835.0	Mm.3213	NM_010700	ENSMUSG00000032193	Ldlr	Hlb301	low density lipoprotein receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-117480392-2	chr12	117480295	117480495	+	954.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36084.0	NM_175930	217944.0	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding	2.08271192400921	1.85279835778451	1.22809511541128	2.28165026338195	2.09987020935318	1.8657087925546	1.94566632775386	1.75594792423694	-0.0171115827695635	0.986519107260516	0.998431161219273
Merged-chr12-3862365-3	chr12	3862271	3862471	+	895.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045884)	promoter-TSS (NR_045884)	-127.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-83101615-1	chr10	83101515	83101715	+	690.0	f0_balb.idr	intron (NM_021439, intron 2 of 2)	intron (NM_021439, intron 2 of 2)	116118.0	NM_021439	58250.0	Mm.360747	NM_021439	ENSMUSG00000034612	Chst11	1110020P09Rik|C4ST|C4ST-1|C4ST1|C4s	carbohydrate sulfotransferase 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-76337785-2	chr16	76337685	76337885	+	997.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358238, intron 2 of 3)	intron (NM_001358238, intron 2 of 3)	35264.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-87255858-4	chr17	87255760	87255960	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_139295, exon 4 of 4)	3' UTR (NM_139295, exon 4 of 4)	10087.0	NM_176808	193813.0	Mm.30251	NM_139295	ENSMUSG00000024150	Mcfd2	1810021C21Rik|F5f8d|Lman1ip|Sdnsf	multiple coagulation factor deficiency 2	protein-coding	5.71800979723848	4.68862458052526	6.02246025099201	5.21193384992693	6.26230551317747	5.9373316448591	6.07952185452512	5.96903770147225	0.628764974661037	0.0295627303873961	0.234852649007375
Merged-chr1-151691429-2	chr1	151691329	151691529	+	569.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_022018, intron 6 of 13)	4.5SRNA|scRNA|scRNA	63298.0	NR_151474	102640772.0		NR_151473	ENSMUSG00000100594	2810414N06Rik	-	RIKEN cDNA 2810414N06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19579442-2	chr7	19579342	19579542	+	948.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_022409, intron 2 of 2)	intron (NM_022409, intron 2 of 2)	2155.0	NM_022409	63872.0	Mm.23310	NM_022409	ENSMUSG00000011267	Zfp296	2210018A16Rik|Znf296	zinc finger protein 296	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99449223-2	chr7	99449123	99449323	+	548.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_201352, intron 10 of 17)	B1F2|SINE|Alu	-16781.0	NM_028145	72184.0	Mm.153585	NM_028145	ENSMUSG00000035298	Klhl35	2810406K13Rik	kelch-like 35	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-118705764-4	chr7	118705666	118705866	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019580)	promoter-TSS (NM_019580)	-28.0	NM_019580	56209.0	Mm.273142	NM_019580	ENSMUSG00000033917	Gde1	1200003M13Rik|Mir16|RGS16	glycerophosphodiester phosphodiesterase 1	protein-coding	5.48054704342224	5.50654996321788	4.83621594647241	5.67608211606074	4.42474581343806	5.47815510151336	5.32174743413438	5.11458577972937	-0.32921333470227	0.317587932210113	0.820928684076605
Merged-chr5-143734743-2	chr5	143734643	143734843	+	631.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2463.0	NM_029749	76800.0	Mm.259620	NM_029749	ENSMUSG00000051306	Usp42	2410140K03Rik|3110031A07Rik|A630018G05Rik|D5Ertd591e	ubiquitin specific peptidase 42	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-89892316-3	chr13	89892227	89892427	+	887.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028012, intron 7 of 7)	L1_Mur2|LINE|L1	-149815.0	NM_001134475	13003.0	Mm.158700	NM_019389	ENSMUSG00000021614	Vcan	5430420N07Rik|9430051N09|Cspg2|DPEAAE|NG2|PG-M|PG-M(V0)|PG-M(V1)|hdf	versican	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-50552405-4	chr9	50552296	50552496	+	975.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133217, intron 1 of 11)	intron (NM_133217, intron 1 of 11)	1266.0	NM_001359610	170752.0	Mm.390149	NM_133217	ENSMUSG00000032066	Bco2	B-diox-II|Bcdo2|Bcmo2|CMO2	beta-carotene oxygenase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106090859-4	chr11	106090674	106090874	+	978.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011947, intron 1 of 15)	B1_Mur2|SINE|Alu	5872.0	NM_011947	26406.0	Mm.27041	NM_011947	ENSMUSG00000020700	Map3k3	AW548911|MAPKKK3|Mekk3|mKIAA4031	mitogen-activated protein kinase kinase kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-80464916-4	chr18	80464827	80465027	+	994.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026295, intron 1 of 12)	RLTR12B|LTR|ERVK	4740.0	NM_026295	67655.0	Mm.312893	NM_026295	ENSMUSG00000033323	Ctdp1	4930563P03Rik|AW553592	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-180276889-4	chr2	180276756	180276956	+	802.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_173031)	TTS (NM_173031)	-3391.0	NM_145851	252966.0	Mm.386884	NM_145851	ENSMUSG00000038990	Cables2	ik3-2	CDK5 and Abl enzyme substrate 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71395806-2	chr8	71395706	71395906	+	993.4166869999999	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181418)	promoter-TSS (NM_181418)	-5.0	NM_181418	234395.0	Mm.34874	NM_181418	ENSMUSG00000034911	Ushbp1	2210404N08Rik|9430064H24|AIEBP|MCC2	USH1 protein network component harmonin binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-137338651-1	chr4	137338551	137338751	+	582.5	f0_balb.idr	intron (NM_009861, intron 1 of 5)	intron (NM_009861, intron 1 of 5)	19108.0	NM_009861	12540.0	Mm.1022	NM_009861	ENSMUSG00000006699	Cdc42	AI747189|AU018915	cell division cycle 42	protein-coding	-1.14149542847138	-0.33100028091332	-1.12720875772362	-1.13728867753953	-1.14086750656251	-1.11193125150289	-1.12436624874263	-1.1356767669541	-2.98824766641611	0.369648585513947	1
Merged-chr17-34113673-2	chr17	34113714	34113914	+	769.25	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_037970, exon 10 of 13)	non-coding (NR_037970, exon 10 of 13)	6086.0	NR_037970	14312.0	Mm.3444	NM_010238	ENSMUSG00000024335	Brd2	AW228947|D17H6S113E|Frg-1|Fsrg-1|Fsrg1|Nat|Ring3|Rnf3|mKIAA4005	bromodomain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85965184-2	chr12	85965084	85965284	+	653.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347395, intron 29 of 32)	intron (NM_001347395, intron 29 of 32)	113857.0	NM_009368	21809.0	Mm.3992	NM_009368	ENSMUSG00000021253	Tgfb3	TGF-beta-3|Tgfb-3	transforming growth factor, beta 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-48418191-3	chr9	48418080	48418280	+	999.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36164.0	NR_026561	667933.0	Mm.491076	NR_026561		Gm8884	EG667933	predicted gene 8884	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114653857-4	chr11	114653755	114653955	+	986.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14688.0	NM_023372	67671.0	Mm.238817	NM_023372	ENSMUSG00000057322	Rpl38	0610025G13Rik|Rbt|Ts|Tss	ribosomal protein L38	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-90461534-4	chr16	90461430	90461630	+	985.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015755, intron 4 of 10)	intron (NM_015755, intron 4 of 10)	75133.0	NM_015755	26559.0	Mm.125874	NM_015755	ENSMUSG00000053414	Hunk	Bstk1|Mak-v	hormonally upregulated Neu-associated kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-66895362-2	chr1	66895262	66895462	+	885.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32053.0	NM_007381	11363.0	Mm.2445	NM_007381	ENSMUSG00000026003	Acadl	AA960361|AU018452|C79855|LCAD	acyl-Coenzyme A dehydrogenase, long-chain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-99234632-4	chr5	99234524	99234724	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_145839, exon 5 of 14)	exon (NM_145839, exon 5 of 14)	18303.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-137855801-2	chr4	137855701	137855901	+	605.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6436.0	NM_199307	230857.0	Mm.401062	NM_199307	ENSMUSG00000057530	Ece1	AW322500|ECE-1|ECE-1a|ECE-1b|ECE-1d	endothelin converting enzyme 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-57248490-4	chr17	57248368	57248568	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134125)	promoter-TSS (NM_134125)	-779.0	NM_030084	78308.0	Mm.28468	NM_030084	ENSMUSG00000005823	Gpr108	1810015L19Rik|AA589464|C79132|Lustr2	G protein-coupled receptor 108	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-127754496-2	chr3	127754398	127754598	+	632.25	f0_balb.idr|f1_balb.idr	intron (NM_027808, intron 1 of 13)	intron (NM_027808, intron 1 of 13)	26029.0	NM_027808	71481.0	Mm.158704	NM_027808	ENSMUSG00000028028	Alpk1	8430410J10Rik|LAK	alpha-kinase 1	protein-coding	2.08871259034718	2.70220497981682	2.11952438887153	1.30692931211583	2.97669409555006	1.74406151241519	4.07926697134885	3.83725120682079	2.27444038383122	0.00690529357696924	0.0844830513288344
Merged-chr13-91810732-2	chr13	91810632	91810832	+	548.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3036.0	NM_145453	69085.0	Mm.52356	NM_145453	ENSMUSG00000021621	Zcchc9	1810019C21Rik	zinc finger, CCHC domain containing 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-42612493-1	chr6	42612393	42612593	+	560.0	f0_balb.idr	Intergenic	Intergenic	-15121.0	NM_203396	403088.0	Mm.354652	NM_203396	ENSMUSG00000018656	Tcaf3	Eapa2|Fam115e	TRPM8 channel-associated factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-60769622-4	chr11	60769530	60769730	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009410, intron 1 of 18)	MTA_Mm|LTR|ERVL-MaLR	7735.0	NM_009410	21975.0	Mm.10708	NM_009410	ENSMUSG00000002814	Top3a	-	topoisomerase (DNA) III alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-85065476-1	chr4	85065376	85065576	+	547.0	f1_c57bl6.idr	intron (NM_175275, intron 16 of 25)	L1MDa|LINE|L1	-139980.0	NM_019535	20404.0	Mm.143603	NM_019535	ENSMUSG00000028488	Sh3gl2	9530001L19Rik|AI120490|AW555077|B930049H17Rik|EEN-B1|SH3PA|Sh3d2a	SH3-domain GRB2-like 2	protein-coding	-1.50561175621786	-1.47331375025452	-1.02203377115094	-1.49110398925286	-1.50334449591826	-1.47119716082604	-1.48086985756939	-1.48966786617048	-2.07776723614574	0.550394407909386	1
Merged-chr8-31237439-1	chr8	31237339	31237539	+	720.5	f0_balb.idr	3' UTR (NM_001286424, exon 4 of 4)	3' UTR (NM_001286424, exon 4 of 4)	50108.0	NM_001286425	171167.0	Mm.334477	NM_134161	ENSMUSG00000046152	Fut10	fuc-TX|fut10A	fucosyltransferase 10	protein-coding	1.15773964455675	1.75616987473214	0.983704027111099	0.957123447482123	2.82424584042513	1.02367339646033	2.62733797623451	2.61157396722289	3.22707744576376	0.00754603331128915	0.0892633895823801
Merged-chr10-67026085-2	chr10	67025985	67026185	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_110511, intron 2 of 6)	ID_B1|SINE|B4	21010.0	NR_110511	102634101.0	Mm.445258	NR_110511	ENSMUSG00000112925	Gm31763	-	predicted gene, 31763	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-164856893-2	chr2	164856793	164856993	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_011125, exon 2 of 16)	exon (NM_011125, exon 2 of 16)	815.0	NM_011125	18830.0	Mm.6105	NM_011125	ENSMUSG00000017754	Pltp	Bpife|OD107	phospholipid transfer protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-80172773-2	chr11	80172665	80172865	+	871.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_172133, intron 7 of 10)	intron (NM_172133, intron 7 of 10)	-11107.0	NM_028019	71956.0	Mm.22985	NM_028019	ENSMUSG00000020707	Rnf135	0610037N03Rik|2410006N06Rik	ring finger protein 135	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118167176-2	chr11	118167076	118167276	+	897.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001112700, intron 12 of 12)	intron (NM_001112700, intron 12 of 12)	-37957.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-96901324-4	chr10	96901207	96901407	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-134461.0	NR_045358	75301.0	Mm.108650	NR_045358	ENSMUSG00000111924	4930556N09Rik	-	RIKEN cDNA 4930556N09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-32534132-4	chr11	32534038	32534238	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 1 of 18)	intron (NM_009288, intron 1 of 18)	872.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59860930-4	chr15	59860803	59861003	+	861.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65944.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-144903317-2	chr4	144903217	144903417	+	601.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357274, intron 2 of 6)	intron (NM_001357274, intron 2 of 6)	10180.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-92811369-2	chr9	92811269	92811469	+	909.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	92653.0	NR_040770	331003.0	Mm.50805	NR_040770	ENSMUSG00000101734	4933400C23Rik	4933400C23	RIKEN cDNA 4933400C23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-149101505-4	chr6	149101355	149101555	+	787.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_177192, exon 1 of 21)	5' UTR (NM_177192, exon 1 of 21)	225.0	NM_177192	320560.0	Mm.426874	NM_177192	ENSMUSG00000030313	Dennd5b	9330160C06Rik|AI852444|D030011O10Rik|Gm17524	DENN/MADD domain containing 5B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10582581-2	chr19	10582481	10582681	+	835.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001362431, intron 4 of 7)	intron (NM_001362431, intron 4 of 7)	5133.0	NM_001282067	225912.0	Mm.252701	NM_201351	ENSMUSG00000034445	Cyb561a3	2310004G04Rik|Cybasc3|Lcytb	cytochrome b561 family, member A3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59724020-2	chr15	59723920	59724120	+	602.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT2B3|LTR|ERVL	70939.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-72808954-2	chr12	72808854	72809054	+	614.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6C|LTR|ERVK	47743.0	NM_008910	19042.0	Mm.261045	NM_008910	ENSMUSG00000021096	Ppm1a	2310003C21Rik|2900017D14Rik|AI427932|AU017636|MMPa-2|MPPa-1	protein phosphatase 1A, magnesium dependent, alpha isoform	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-25268680-4	chr10	25268602	25268802	+	993.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018747, intron 4 of 7)	intron (NM_018747, intron 4 of 7)	30461.0	NM_018747	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-53791821-4	chr1	53791724	53791924	+	842.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6609.0	NM_133810	98267.0	Mm.25559	NM_133810	ENSMUSG00000026094	Stk17b	3110009A03Rik|AI120141|Drak2	serine/threonine kinase 17b (apoptosis-inducing)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-84055954-3	chr10	84055859	84056059	+	726.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152790, intron 2 of 4)	Tigger19a|DNA|TcMar-Tigger	44738.0	NR_152790	102637349.0	Mm.402869	NR_152790	ENSMUSG00000111049	Gm34184	-	predicted gene, 34184	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-36666565-2	chr16	36666465	36666665	+	800.833374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019388)	promoter-TSS (NM_019388)	-488.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-88723910-1	chr10	88723810	88724010	+	560.0	f1_c57bl6.idr	Intergenic	Intergenic	7191.0	NM_001037166	237433.0	Mm.478763	NM_001037166		Gm4925	EG237433	predicted gene 4925	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124744423-2	chr6	124744323	124744523	+	555.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007881, intron 7 of 9)	intron (NM_007881, intron 7 of 9)	-3344.0	NM_013535	14790.0	Mm.439877	NM_013535	ENSMUSG00000072772	Grcc10	2310033H05Rik|C10	gene rich cluster, C10 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-47776051-1	chr11	47775951	47776151	+	607.0	f0_balb.idr	Intergenic	Intergenic	-396749.0	NM_011891	24052.0	Mm.338890	NM_011891	ENSMUSG00000020354	Sgcd	35kDa|delta-SG	sarcoglycan, delta (dystrophin-associated glycoprotein)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122146497-4	chr5	122146410	122146610	+	994.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8448.0	NM_183307	330188.0	Mm.386907	NM_183307	ENSMUSG00000043036	Ccdc63	4921511C16Rik	coiled-coil domain containing 63	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-13408308-2	chr4	13408208	13408408	+	752.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-334994.0	NM_001111026	12395.0	Mm.4909	NM_009822	ENSMUSG00000006586	Runx1t1	Cbfa2t1h|ETO|MTG8	runt-related transcription factor 1; translocated to, 1 (cyclin D-related)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-21013316-3	chr11	21013191	21013391	+	647.200012	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-78033.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-9974030-2	chr19	9973930	9974130	+	629.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-6570.0	NR_073181	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-59295466-4	chr9	59295358	59295558	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359282, intron 1 of 6)	intron (NM_001359282, intron 1 of 6)	3886.0	NM_028121	72141.0	Mm.22456	NM_028121	ENSMUSG00000025236	Adpgk	2610017G09Rik|Adp-gk|C77577	ADP-dependent glucokinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-107906803-1	chr13	107906703	107906903	+	778.0	f1_balb.idr	Intergenic	Intergenic	-16739.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122879592-2	chr8	122879492	122879692	+	772.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31218.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-42876348-3	chr10	42876247	42876447	+	798.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359265, intron 1 of 6)	intron (NM_001359265, intron 1 of 6)	15835.0	NM_001359264	268297.0	Mm.98731	NM_172938	ENSMUSG00000044770	Scml4	9330161D17|mFLJ00197	Scm polycomb group protein like 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-137831714-4	chr5	137831616	137831816	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153510, intron 2 of 6)	MLTR14|LTR|ERV1	4562.0	NM_153510	231805.0	Mm.379385	NM_153510	ENSMUSG00000046245	Pilra	AV021745|FDF03	paired immunoglobin-like type 2 receptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-75143461-5	chr5	75143395	75143595	+	781.716675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045792, intron 3 of 3)	intron (NR_045792, intron 3 of 3)	-8756.0	NR_144636	18595.0	Mm.221403	NM_011058	ENSMUSG00000029231	Pdgfra	AI115593|CD140a|Pdgfr-2	platelet derived growth factor receptor, alpha polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-21695500-4	chr16	21695468	21695668	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001001881)	promoter-TSS (NM_001001881)	-903.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-67957060-3	chr8	67956980	67957180	+	786.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177698, intron 3 of 14)	intron (NM_177698, intron 3 of 14)	17494.0	NM_177698	234353.0	Mm.32525	NM_027626	ENSMUSG00000030465	Psd3	4931420C21Rik|AI661273|BC003498|D430018P08|EFA6D	pleckstrin and Sec7 domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118015612-3	chr11	118015506	118015706	+	932.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151726, intron 8 of 9)	intron (NR_151726, intron 8 of 9)	13336.0	NR_105898	102466768.0		NR_105898	ENSMUSG00000098958	Mir6933	Gm27856|mmu-mir-6933	microRNA 6933	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117371442-4	chr8	117371327	117371527	+	856.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028941, intron 1 of 20)	intron (NM_028941, intron 1 of 20)	22257.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-25358269-1	chr11	25358169	25358369	+	789.0	f0_balb.idr	intron (NR_045853, intron 5 of 7)	intron (NR_045853, intron 5 of 7)	32162.0	NR_045853	71234.0	Mm.158627	NR_045853	ENSMUSG00000033015	4933427E13Rik	-	RIKEN cDNA 4933427E13 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94992277-4	chr10	94992110	94992310	+	802.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47632.0	NM_018797	54712.0	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-152227365-1	chr2	152227265	152227465	+	1000.0	f0_c57.idr	intron (NM_007788, intron 1 of 12)	CpG	525.0	NM_007788	12995.0	Mm.23692	NM_007788	ENSMUSG00000074698	Csnk2a1	CK2|Csnk2a1-rs4	casein kinase 2, alpha 1 polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84909519-2	chr8	84909419	84909619	+	859.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010062, intron 3 of 5)	intron (NM_010062, intron 3 of 5)	895.0	NM_010062	13423.0	Mm.350831	NM_010062	ENSMUSG00000003812	Dnase2a	Dnase2	deoxyribonuclease II alpha	protein-coding	0.0696724683435608	0.0872604279310133	0.0815028944222115	0.793013112835371	0.343077416498116	0.088557777664447	0.263368923948744	0.616329789553453	0.211640573662103	0.918130474056965	1
Merged-chr15-66103570-4	chr15	66103452	66103652	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152923, intron 1 of 14)	intron (NM_152923, intron 1 of 14)	-126748.0	NM_001145096	654498.0	Mm.364550	NM_001145096	ENSMUSG00000072511	Hhla1	F930104E18Rik	HERV-H LTR-associating 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-6568005-4	chr15	6567905	6568105	+	991.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-11842.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-94734511-3	chr9	94734412	94734612	+	904.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177909, intron 4 of 15)	intron (NM_177909, intron 4 of 15)	-17317.0	NR_106116	102465763.0		NR_106116	ENSMUSG00000098251	Mir7656	Gm27614|mmu-mir-7656	microRNA 7656	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-102072830-2	chr5	102072730	102072930	+	547.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2909.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-46172085-3	chr4	46171994	46172194	+	772.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001033201, exon 23 of 23)	3' UTR (NM_001033201, exon 23 of 23)	24217.0	NM_011728	22590.0	Mm.247036	NM_011728	ENSMUSG00000028329	Xpa	AI573865|Xpac	xeroderma pigmentosum, complementation group A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-27188398-4	chr3	27188303	27188503	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 1 of 4)	intron (NM_178772, intron 1 of 4)	5399.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-61231552-4	chr11	61231450	61231650	+	876.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_138545, intron 9 of 10)	intron (NR_138545, intron 9 of 10)	22808.0	NM_001331112	11670.0	Mm.4257	NM_007436	ENSMUSG00000019102	Aldh3a1	Ahd-4|Ahd4|Aldh|Aldh3	aldehyde dehydrogenase family 3, subfamily A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69998250-4	chr11	69998128	69998328	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291125, intron 3 of 4)	intron (NM_001291125, intron 3 of 4)	766.0	NM_001291127	78246.0	Mm.20805	NM_030064	ENSMUSG00000018572	Phf23	JUNE-1	PHD finger protein 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88740449-2	chr3	88740349	88740549	+	907.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur2|SINE|Alu	23595.0	NR_028056	19769.0	Mm.4009	NM_009069	ENSMUSG00000028057	Rit1	RIBB|ROC1|Rit	Ras-like without CAAX 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-53653923-4	chr19	53653816	53654016	+	995.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23390.0	NM_001170847	73713.0	Mm.313695	NM_001170847	ENSMUSG00000043639	Rbm20	1110018J23Rik|2010003H22Rik|AI646761	RNA binding motif protein 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-80961384-4	chr8	80961237	80961437	+	891.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	53569.0	NM_027554	74841.0	Mm.246018	NM_027554	ENSMUSG00000038250	Usp38	4631402N15Rik|4833420O05Rik|AA536967|AU044701|AW544820|mKIAA1891	ubiquitin specific peptidase 38	protein-coding	1.66216913126123	0.753042044766824	1.54641270586775	0.726173063315012	1.51122329712051	0.756385552541301	1.76541856265188	0.728256248102325	0.0974876924173487	0.949827236699177	0.998431161219273
Merged-chr15-53462238-2	chr15	53462138	53462338	+	994.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_177225, intron 4 of 4)	intron (NM_177225, intron 4 of 4)	-116055.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150837598-4	chr4	150837505	150837705	+	771.729187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040649, intron 3 of 3)	intron (NR_040649, intron 3 of 3)	-16191.0	NM_001356323	74155.0	Mm.318841	NM_133753	ENSMUSG00000028967	Errfi1	1300002F13Rik|AI788755|Mig-6|Mig6|RALT	ERBB receptor feedback inhibitor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-104683174-3	chr3	104683089	104683289	+	776.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44525.0	NM_009196	20501.0	Mm.9086	NM_009196	ENSMUSG00000032902	Slc16a1	AL022710|Mct1	solute carrier family 16 (monocarboxylic acid transporters), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70434603-4	chr11	70434511	70434711	+	863.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145429, intron 1 of 14)	intron (NM_145429, intron 1 of 14)	2031.0	NM_001271358	216869.0	Mm.203747	NM_145429	ENSMUSG00000060216	Arrb2	AI326910|AW122872|Arr3	arrestin, beta 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-51939262-3	chr3	51939160	51939360	+	642.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	165746.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-5049258-3	chr16	5049150	5049350	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356320)	promoter-TSS (NM_001356320)	660.0	NM_001359747	74022.0	Mm.21652	NM_028720	ENSMUSG00000022536	Glyr1	2810419J22Rik|3930401K13Rik|AW545332|Npac	glyoxylate reductase 1 homolog (Arabidopsis)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88083924-2	chr3	88083824	88084024	+	961.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033484, intron 1 of 37)	intron (NM_001033484, intron 1 of 37)	1873.0	NM_001033484	404710.0	Mm.331133	NM_001033484	ENSMUSG00000028068	Iqgap3	AI593484|D030034H08	IQ motif containing GTPase activating protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-111886178-3	chr4	111886073	111886273	+	844.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145551, intron 11 of 14)	intron (NM_145551, intron 11 of 14)	16623.0	NM_145551	230612.0	Mm.26630	NM_145551	ENSMUSG00000028544	Slc5a9	AI159731|SGLT4	solute carrier family 5 (sodium/glucose cotransporter), member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-110880511-2	chr1	110880411	110880611	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17B|LTR|ERVK	97082.0	NM_001356415	227485.0	Mm.322070	NM_001081386	ENSMUSG00000047216	Cdh19	-	cadherin 19, type 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-31113729-4	chr6	31113626	31113826	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110471, intron 3 of 3)	intron (NR_110471, intron 3 of 3)	-50633.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-19843974-2	chr16	19843874	19844074	+	615.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40300.0	NR_027896	68162.0	Mm.35159	NR_015488		A930003A15Rik	AI853191	RIKEN cDNA A930003A15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116006779-2	chr11	116006679	116006879	+	624.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001005608, intron 35 of 39)	intron (NM_001005608, intron 35 of 39)	5940.0	NM_016905	14635.0	Mm.2820	NM_016905	ENSMUSG00000020766	Galk1	AA409894|GALK|Gk|Glk|Glk1	galactokinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-113143818-2	chr12	113143718	113143918	+	943.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_024223, intron 2 of 6)	intron (NM_024223, intron 2 of 6)	3213.0	NM_001347443	68337.0	Mm.133825	NM_024223	ENSMUSG00000006356	Crip2	0610010I23Rik|AW743261|C77570|CRP2|CRP4|Crp|ESP1|Hlp	cysteine rich protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-25215004-2	chr12	25214904	25215104	+	831.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	85830.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-64448199-4	chr1	64448098	64448298	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-84606.0	NM_009952	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-102982610-4	chr9	102982514	102982714	+	974.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-25875.0	NM_033314	24059.0	Mm.207106	NM_033314	ENSMUSG00000032548	Slco2a1	2310021C19Rik|Pgt|Slc21a2|mPgt	solute carrier organic anion transporter family, member 2a1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19281876-3	chr7	19281773	19281973	+	947.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013648)	promoter-TSS (NM_013648)	-751.0	NM_013648	20167.0	Mm.24142	NM_013648	ENSMUSG00000030401	Rtn2	MMS10-P|Ms10p|NSPLI|Nspl1	reticulon 2 (Z-band associated protein)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-33366782-3	chr19	33366683	33366883	+	893.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146342, intron 2 of 4)	intron (NM_001146342, intron 2 of 4)	25512.0	NM_001167818	67795.0	Mm.204591	NM_001146342	ENSMUSG00000071573	Rnls	6530404N21Rik|AI452315|AW060440|C10orf59	renalase, FAD-dependent amine oxidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-105652208-2	chr13	105652108	105652308	+	669.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19C|LTR|ERVK	208515.0	NM_008308	15550.0	Mm.4716	NM_008308	ENSMUSG00000021721	Htr1a	Gpcr18	5-hydroxytryptamine (serotonin) receptor 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-24576126-2	chr5	24576026	24576226	+	777.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359205, intron 2 of 13)	intron (NM_001359205, intron 2 of 13)	1220.0	NM_001359205	27407.0	Mm.21629	NM_013853	ENSMUSG00000028953	Abcf2	0710005O05Rik|Drr3|E430001O06	ATP-binding cassette, sub-family F (GCN20), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-46846141-3	chr11	46846034	46846234	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35335.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	2.38750114882052	1.42275844345272	1.38198100363703	2.62138712313943	2.67505810764126	3.16566912037967	2.50389910160639	2.8924542829989	1.5490015598705	0.0816465274197737	0.436669406827241
Merged-chr2-145825854-1	chr2	145825754	145825954	+	643.0	f0_balb.idr	intron (NM_028724, intron 4 of 12)	ID_B1|SINE|B4	39738.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-88713965-2	chr10	88713865	88714065	+	618.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	17136.0	NM_001037166	237433.0	Mm.478763	NM_001037166		Gm4925	EG237433	predicted gene 4925	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34589963-4	chr17	34589816	34590016	+	999.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_134116, exon 1 of 4)	5' UTR (NM_134116, exon 1 of 4)	110.0	NM_134116	106512.0	Mm.26584	NM_134116	ENSMUSG00000034786	Gpsm3	AA960287|AGS4	G-protein signalling modulator 3 (AGS3-like, C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-82225961-4	chr12	82225850	82226050	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167983, intron 1 of 23)	intron (NM_001167983, intron 1 of 23)	55934.0	NM_001167983	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-51278219-1	chr14	51278119	51278319	+	583.0	f1_balb.idr	Intergenic	Intergenic	-22107.0	NM_053113	93726.0	Mm.153688	NM_053113	ENSMUSG00000047222	Rnase2a	Ear11	ribonuclease, RNase A family, 2A (liver, eosinophil-derived neurotoxin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25386289-4	chr7	25386173	25386373	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_073028)	TTS (NR_073028)	3839.0	NM_001039507	16890.0	Mm.158548	NM_010719	ENSMUSG00000003123	Lipe	4933403G17Rik|HSL	lipase, hormone sensitive	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-96504245-4	chr9	96504161	96504361	+	802.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER5A|DNA|hAT-Charlie	-25586.0	NM_001311135	19823.0	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-149273378-2	chr5	149273278	149273478	+	783.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001308462, intron 2 of 3)	intron (NM_001308462, intron 2 of 3)	8374.0	NM_009663	11690.0	Mm.19844	NM_009663	ENSMUSG00000060063	Alox5ap	Flap	arachidonate 5-lipoxygenase activating protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-105345181-3	chr5	105345062	105345262	+	778.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132129, intron 1 of 10)	intron (NR_132129, intron 1 of 10)	1310.0	NM_001039647	634650.0	Mm.458435	NM_001039647	ENSMUSG00000092021	Gbp11	EG634650|Gm7141	guanylate binding protein 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45935287-4	chr7	45935233	45935433	+	879.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033243, intron 2 of 12)	intron (NM_001033243, intron 2 of 12)	6935.0	NM_001033243	211535.0	Mm.227539	NM_001033243	ENSMUSG00000040189	Ccdc114	-	coiled-coil domain containing 114	protein-coding	0.830485126869851	0.347647356956092	0.339524735378107	0.510765851491874	1.02143016126111	0.349470342280104	0.341321312677404	1.18969091275836	1.46145896983705	0.431306902153418	1
Merged-chr9-107567021-4	chr9	107567001	107567201	+	917.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_019742)	TTS (NM_019742)	-2062.0	NM_010489	15587.0	Mm.4834	NM_010489	ENSMUSG00000010047	Hyal2	AI256841|AU020858|AW555733	hyaluronoglucosaminidase 2	protein-coding	1.64544783642741	1.84198862696428	1.78009439287398	1.46173532378952	1.65846143483981	1.13199391440237	2.11255691815505	1.73952779089913	0.0864348325054803	0.936712677633346	0.998431161219273
Merged-chr2-181537837-4	chr2	181537738	181537938	+	929.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271584, intron 2 of 5)	intron (NM_001271584, intron 2 of 5)	17353.0	NM_001271584	13002.0	Mm.140761	NM_016775	ENSMUSG00000000826	Dnajc5	2610314I24Rik|AU018536|Csp	DnaJ heat shock protein family (Hsp40) member C5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-107252850-1	chr4	107252750	107252950	+	710.0	f0_balb.idr	promoter-TSS (NM_001355460)	promoter-TSS (NM_001355460)	683.0	NM_029985	77809.0	Mm.29681	NM_029985	ENSMUSG00000028617	Lrrc42	A930011F22Rik|AA536996	leucine rich repeat containing 42	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91696393-4	chr2	91696299	91696499	+	916.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355416, intron 1 of 17)	B4A|SINE|B4	14193.0	NM_145528	51897.0	Mm.28492	NM_145528	ENSMUSG00000027244	Atg13	1110053A20Rik|D2Ertd391e|Harbi1	autophagy related 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-52709974-2	chr15	52709874	52710074	+	810.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2471.0	NM_027212	69790.0	Mm.195562	NM_027212	ENSMUSG00000038622	Med30	1810038N03Rik|2510044J04Rik|TRAP25|Thrap6	mediator complex subunit 30	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-14173560-3	chr10	14173428	14173628	+	723.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2B2|LINE|L1	207149.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	0.566492065792924	0.218438835436976	0.656405246179437	0.728182852535113	0.201440422368522	0.70834279832433	0.213802923951971	0.208709436307625	-1.42818434720236	0.471839953962548	1
Merged-chr18-46575555-8	chr18	46575367	46575567	+	863.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173394)	promoter-TSS (NM_173394)	-934.0	NM_173394	225471.0	Mm.149280	NM_173394	ENSMUSG00000056130	Ticam2	B430113A10|TICAM-2|TRAM|Tirp|Trif	toll-like receptor adaptor molecule 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123024781-3	chr5	123024697	123024897	+	841.2000119999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175423, intron 1 of 1)	B1_Mm|SINE|Alu	9723.0	NM_175423	109305.0	Mm.218582	NM_175423	ENSMUSG00000049686	Orai1	D730049H07Rik|Tmem142a|orai-1	ORAI calcium release-activated calcium modulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-80792729-3	chr15	80792624	80792824	+	876.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144812, intron 4 of 24)	Lx8|LINE|L1	-5886.0	NM_177124	213988.0	Mm.131328	NM_144812	ENSMUSG00000047888	Tnrc6b	2700090M07Rik|A730065C02Rik|AI848765|D230019K20Rik	trinucleotide repeat containing 6b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139368103-2	chr5	139368003	139368203	+	914.7000119999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_028469, intron 2 of 4)	intron (NM_028469, intron 2 of 4)	1642.0	NR_029768	723898.0		NR_029768	ENSMUSG00000065593	Mir339	Mirn339|mir-339|mmu-mir-339	microRNA 339	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34078504-2	chr17	34078404	34078604	+	610.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13875.0	NM_008206	15001.0	Mm.116	NM_008206	ENSMUSG00000024334	H2-Oa	H-2Oa	histocompatibility 2, O region alpha locus	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-50053423-4	chr18	50053312	50053512	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_134131, exon 1 of 2)	5' UTR (NM_134131, exon 1 of 2)	130.0	NM_134131	106869.0	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	4.57214695696811	4.12306820178065	4.87325882942057	4.00164231544763	3.99678361868347	4.70101340216638	2.13230747574159	2.96293801697791	-0.875606475418462	0.132596238275722	0.569802889266514
Merged-chr13-44996487-4	chr13	44996383	44996583	+	840.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025772, intron 1 of 9)	intron (NM_025772, intron 1 of 9)	5613.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-43088882-2	chr17	43088782	43088982	+	652.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_178589, exon 6 of 6)	3' UTR (NM_178589, exon 6 of 6)	69409.0	NR_045155	545207.0	Mm.329050	NR_045153		E130008D07Rik	-	RIKEN cDNA E130008D07 gene	ncRNA	0.186599865928275	0.416455921606324	-0.0547330116246171	-0.058259619229322	0.192877769138241	0.425564491578989	-0.053722743656911	-0.0576443581874416	0.0401679588089307	0.98516215522826	1
Merged-chr15-100312590-2	chr15	100312490	100312690	+	869.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_027334, intron 1 of 1)	intron (NM_027334, intron 1 of 1)	7773.0	NM_027334	70152.0	Mm.488086	NM_027334	ENSMUSG00000054619	Mettl7a1	2210414H16Rik|3300001H21Rik|Aam-B|Mettl7a|UbiE1	methyltransferase like 7A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-73170992-2	chr14	73170892	73171092	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134083, intron 10 of 14)	intron (NM_134083, intron 10 of 14)	28207.0	NR_033185	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-142497935-3	chr7	142497820	142498020	+	861.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163666)	promoter-TSS (NM_001163666)	-916.0	NM_001347549	21957.0	Mm.389992	NM_011620	ENSMUSG00000061723	Tnnt3	fTnT	troponin T3, skeletal, fast	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-70992570-3	chr17	70992473	70992673	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2057.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	3.80034445236658	3.08335519164025	3.1054035225248	4.13158072815328	5.05340241631006	4.69163863895576	4.39408381965926	5.47094256816614	1.73996450512913	0.000115226978359064	0.00342766930500507
Merged-chr6-134469418-4	chr6	134469313	134469513	+	848.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008514, intron 13 of 22)	intron (NM_008514, intron 13 of 22)	54985.0	NM_001355686	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	2.09802551472538	1.70373065374158	2.06760900575327	2.11509317968376	1.39503249058447	1.71472051834335	2.19273974658558	2.02085608392588	-0.394588690282719	0.685604180370063	0.996533206832645
Merged-chr1-37559845-4	chr1	37559739	37559939	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18823.0	NM_173870	269181.0	Mm.25861	NM_173870	ENSMUSG00000026110	Mgat4a	9530018I07Rik|GnT-IVa|glcNAc-T-IVa	mannoside acetylglucosaminyltransferase 4, isoenzyme A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3899138-4	chr19	3899044	3899244	+	961.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001136091, intron 10 of 19)	intron (NM_001136091, intron 10 of 19)	6086.0	NM_016921	27060.0	Mm.271689	NM_016921	ENSMUSG00000001750	Tcirg1	ATP6N1C|ATP6a3|Atp6i|OC-116|OPTB1|Stv1|TIRC7|Vph1|oc	T cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 protein A3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106741919-2	chr11	106741819	106742019	+	821.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-9307.0	NM_001271375	380732.0	Mm.343952	NM_001033435	ENSMUSG00000040528	Milr1	Allergin-1|Gm885|Mca32	mast cell immunoglobulin like receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-20942764-1	chr1	20942664	20942864	+	638.0	f1_balb.idr	Intergenic	Intergenic	-8862.0	NM_027974	71877.0	Mm.29178	NM_027974	ENSMUSG00000041809	Efhc1	1700029F22Rik|mRib72-1|myoclonin1	EF-hand domain (C-terminal) containing 1	protein-coding	-0.598800492466356	-0.0937265736463488	-0.591401088236158	-0.594185098597722	-0.0276179594068379	-0.586973567041826	-0.59060470756079	-0.593698941733442	0.252914492925823	0.929560901431202	1
Merged-chr3-90112927-2	chr3	90112827	90113027	+	593.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029937, intron 2 of 39)	B1_Mus2|SINE|Alu	8795.0	NM_029937	77595.0	Mm.159949	NM_029937	ENSMUSG00000027939	Nup210l	4930548O11Rik|R26-EGFP|Tg(Gt(ROSA)26Sor-EGFP)130910Eps	nucleoporin 210-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-100435385-2	chr6	100435285	100435485	+	782.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-92015.0	NR_040525	73395.0	Mm.69413	NR_040525	ENSMUSG00000101553	1700049E22Rik	-	RIKEN cDNA 1700049E22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-195032400-4	chr1	195032281	195032481	+	985.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015566, intron 7 of 7)	intron (NR_015566, intron 7 of 7)	-4659.0	NR_029809	723963.0		NR_029809	ENSMUSG00000065412	Mir29b-2	Mirn29b-2|mir-29b-2	microRNA 29b-2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-151575732-3	chr2	151575647	151575847	+	853.56665	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145535, intron 1 of 8)	intron (NM_145535, intron 1 of 8)	3124.0	NM_145535	228765.0	Mm.32068	NM_145535	ENSMUSG00000027456	Sdcbp2	-	syndecan binding protein (syntenin) 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-78050736-3	chr2	78050660	78050860	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_108098)	promoter-TSS (NR_108098)	-417.0	NR_108098	78158.0	Mm.78473	NR_108098	ENSMUSG00000085431	4930440I19Rik	-	RIKEN cDNA 4930440I19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-107763851-2	chr13	107763751	107763951	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 5 of 14)	intron (NM_145456, intron 5 of 14)	76454.0	NR_045900	72257.0	Mm.234155	NR_045900	ENSMUSG00000102000	1700006H21Rik	-	RIKEN cDNA 1700006H21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-152770493-2	chr2	152770398	152770598	+	974.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289739, intron 2 of 4)	B1_Mus1|SINE|Alu	16325.0	NM_053091	84682.0	Mm.196668	NM_053091	ENSMUSG00000009876	Cox4i2	Cox4b|CoxIV-2	cytochrome c oxidase subunit 4I2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-21017323-4	chr5	21017227	21017427	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011203, intron 4 of 17)	Lx5|LINE|L1	17920.0	NM_001356592	19248.0	Mm.319117	NM_011203	ENSMUSG00000028771	Ptpn12	P19-PTP|PTP-P19|PTP-PEST|PTPG1	protein tyrosine phosphatase, non-receptor type 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-78574517-2	chr16	78574417	78574617	+	629.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025967, intron 2 of 4)	MIR|SINE|MIR	2171.0	NM_001252438	67102.0	Mm.37332	NM_025967	ENSMUSG00000022864	D16Ertd472e	1700010I10Rik|2310009O17Rik|E330003K22Rik|Eurl	DNA segment, Chr 16, ERATO Doi 472, expressed	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-26769755-2	chr10	26769655	26769855	+	637.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2757.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-43848041-3	chr6	43847915	43848115	+	775.138916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-181737.0	NM_001311111	29807.0	Mm.320979	NM_013861	ENSMUSG00000029735	Tpk1	-	thiamine pyrophosphokinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-13681042-3	chr6	13680938	13681138	+	706.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3072.0	NM_175312	101148.0	Mm.354863	NM_175312	ENSMUSG00000042742	Bmt2	AI666701|B630005N14Rik	base methyltransferase of 25S rRNA 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-30844239-4	chr10	30844131	30844331	+	792.200012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1448.0	NM_013904	15214.0	Mm.103573	NM_013904	ENSMUSG00000019789	Hey2	CHF1|Herp1|Hrt2|bHLHb32|hesr2	hairy/enhancer-of-split related with YRPW motif 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-88034569-3	chr6	88034469	88034669	+	908.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293652, intron 1 of 7)	intron (NM_001293652, intron 1 of 7)	10448.0	NM_001293653	19349.0	Mm.333233	NM_009005	ENSMUSG00000079477	Rab7	Rab7a	RAB7, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-7843090-2	chr9	7842990	7843190	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6033.0	NM_007465	11797.0	Mm.335659	NM_007465	ENSMUSG00000057367	Birc2	AW146227|Api1|Api2|Birc3|C-IAP1|C330006D17Rik|HIAP1|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF48|cIAP1|cIAP2|mcIAP1	baculoviral IAP repeat-containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27019252-2	chr2	27019152	27019352	+	890.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029862, intron 5 of 5)	intron (NM_029862, intron 5 of 5)	8746.0	NM_172659	227659.0	Mm.41203	NM_172659	ENSMUSG00000036067	Slc2a6	A330096C23|F630103L12Rik|Glut6|Glut9	solute carrier family 2 (facilitated glucose transporter), member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-138013924-1	chr4	138013824	138014024	+	629.0	f0_balb.idr	intron (NM_001355699, intron 1 of 32)	intron (NM_001355699, intron 1 of 32)	16099.0	NM_001355700	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	2.38129925793902	2.2921329422904	1.87069849642559	1.35559014925756	2.74168196882957	3.29223670035289	2.49635548513579	2.52684586208179	1.65121204295491	0.0524854523020495	0.335076511202549
Merged-chr11-67966441-4	chr11	67966348	67966548	+	981.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361351)	promoter-TSS (NM_001361351)	-10.0	NM_001361352	55943.0	Mm.3973	NM_018768	ENSMUSG00000020903	Stx8	0610007H08Rik|1110002H11Rik|4930571E13Rik|CARB	syntaxin 8	protein-coding	3.07354265469619	4.15629185522621	3.53180450261123	3.73287824716791	3.00079941714124	4.45000184560109	3.64355633756185	3.68260800699273	0.166022510581712	0.762874796138564	0.998431161219273
Merged-chr3-151380281-2	chr3	151380181	151380381	+	590.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57601.0	NM_133222	170757.0	Mm.317261	NM_133222	ENSMUSG00000039167	Adgrl4	1110033N21Rik|ETL1|Eltd1|Etl	adhesion G protein-coupled receptor L4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-4600914-2	chr12	4600814	4601014	+	859.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001198969, intron 1 of 16)	intron (NM_001198969, intron 1 of 16)	7906.0	NM_001198968	20403.0	Mm.341204	NM_011365	ENSMUSG00000020640	Itsn2	AI327390|Ese2|Sh3d1B|Sh3p18|mKIAA1256	intersectin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-84972136-4	chr16	84972031	84972231	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045889)	promoter-TSS (NR_045889)	-80.0	NR_045889	100038614.0	Mm.441351	NR_045889	ENSMUSG00000115518	Gm10791	-	predicted gene 10791	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-28420027-4	chr13	28419932	28420132	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	277548.0	NM_023746	28078.0	Mm.155058	NM_023746	ENSMUSG00000017064	Prl5a1	1600013P04Rik|D13Wsu14e|Ghd24|PLP-L|Prlpl	prolactin family 5, subfamily a, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-55910595-4	chr7	55910484	55910684	+	873.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011370, intron 22 of 30)	intron (NM_011370, intron 22 of 30)	51909.0	NM_001256133	93790.0	Mm.37249	NM_023647	ENSMUSG00000030452	Nipa2	2600017P10Rik|3830408P04Rik|AB041581	non imprinted in Prader-Willi/Angelman syndrome 2 homolog (human)	protein-coding	2.12495168089627	1.11924505289968	1.9331792175196	2.24624215753054	1.68258129195368	1.57348612305484	1.10266856936901	1.88659959584896	-0.987949837019058	0.386430579081252	0.876334568009738
Merged-chr13-107022503-4	chr13	107022399	107022599	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145779)	promoter-TSS (NM_001145779)	-71.0	NR_015471	100040322.0	Mm.133867	NR_015471	ENSMUSG00000071181	3830408C21Rik	-	RIKEN cDNA 3830408C21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46847835-2	chr8	46847735	46847935	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_008391)	TTS (NM_008391)	108090.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-111226472-4	chr7	111226379	111226579	+	795.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-103804.0	NR_015573	75479.0	Mm.381620	NR_015573	ENSMUSG00000110424	1700012D14Rik	-	RIKEN cDNA 1700012D14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-145744368-3	chr2	145744281	145744481	+	757.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033220, intron 3 of 3)	intron (NR_033220, intron 3 of 3)	-41735.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-157096368-2	chr2	157096268	157096468	+	854.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001177439, exon 6 of 6)	exon (NM_001177439, exon 6 of 6)	9313.0	NM_001177439	383766.0	Mm.480305	NM_001177439	ENSMUSG00000074628	Tldc2	Gm1332	TBC/LysM associated domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19687365-2	chr7	19687265	19687465	+	838.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR1B|LTR|ERV1	5294.0	NM_001110009	11812.0	Mm.182440	NM_007469	ENSMUSG00000040564	Apoc1	Apo-CIB|ApoC-IB|apo-CI|apoC-I	apolipoprotein C-I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-180025834-2	chr2	180025734	180025934	+	674.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_177727, intron 1 of 8)	intron (NM_177727, intron 1 of 8)	847.0	NM_177727	241846.0	Mm.21577	NM_177727	ENSMUSG00000039108	Lsm14b	9430078B04|BC040823	LSM family member 14B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-17901887-4	chr17	17901754	17901954	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14030.0	NM_008039	14289.0	Mm.378918	NM_008039	ENSMUSG00000052270	Fpr2	E330010I07Rik|Fpr-rs2	formyl peptide receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-83695971-4	chr17	83695874	83696074	+	806.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-10189.0	NM_001171054	116871.0	Mm.277668	NM_054082	ENSMUSG00000055817	Mta3	1110002J22Rik|mKIAA1266	metastasis associated 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-74988426-1	chr15	74988326	74988526	+	1000.0	f1_c57bl6.idr	Intergenic	Intergenic	-4996.0	NM_020498	57248.0	Mm.358339	NM_020498	ENSMUSG00000022586	Ly6i	AI789751|Ly-6I|Ly-6M	lymphocyte antigen 6 complex, locus I	protein-coding	2.49143914165708	2.67500410714061	3.3670542311162	3.04083617540437	2.51336605425179	1.92611847790282	3.90555091764898	2.86959017536602	0.155856316595986	0.835764589157076	0.998431161219273
Merged-chr6-50973537-3	chr6	50973446	50973646	+	978.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	197431.0	NR_045984	319981.0	Mm.131454	NR_045984	ENSMUSG00000107667	C530044C16Rik	-	RIKEN cDNA C530044C16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-119579129-2	chr9	119579029	119579229	+	660.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021544)	promoter-TSS (NM_021544)	-113.0	NM_021544	20271.0	Mm.103584	NM_021544	ENSMUSG00000032511	Scn5a	Nav1.5|Nav1.5c|SkM1|SkM2|mH1	sodium channel, voltage-gated, type V, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30590527-2	chr7	30590427	30590627	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153655, intron 2 of 3)	intron (NR_153655, intron 2 of 3)	1147.0	NR_106134	102465774.0		NR_106134	ENSMUSG00000098553	Mir3569	Gm27279|mmu-mir-3569	microRNA 3569	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-42018083-4	chr19	42017978	42018178	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145500, intron 1 of 2)	intron (NM_145500, intron 1 of 2)	-17960.0	NM_020033	56642.0	Mm.143737	NM_020033	ENSMUSG00000025172	Ankrd2	Arpp|mArpp	ankyrin repeat domain 2 (stretch responsive muscle)	protein-coding	2.96551156403587	1.55488153857075	2.96330038905737	3.04861606423305	3.18751163570214	1.56564523530301	2.98677691357613	3.2805787344158	0.271933748012802	0.748751641768069	0.998431161219273
Merged-chr10-81356509-4	chr10	81356411	81356611	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028657)	promoter-TSS (NM_028657)	-980.0	NM_028657	73822.0	Mm.182281	NM_028657	ENSMUSG00000034854	Mfsd12	C19orf28|F630110N24Rik|Wdt1|gr	major facilitator superfamily domain containing 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-73446333-2	chr12	73446233	73446433	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36770.0	NR_046013	380765.0	Mm.490476	NR_046013	ENSMUSG00000056359	D830013O20Rik	Gm891	RIKEN cDNA D830013O20 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-72350412-3	chr5	72350326	72350526	+	926.333374	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122756, intron 10 of 21)	intron (NM_001122756, intron 10 of 21)	147083.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26918373-2	chr17	26918273	26918473	+	590.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_053173, intron 1 of 10)	intron (NM_053173, intron 1 of 10)	1282.0	NM_053173	16580.0	Mm.491138	NM_016761	ENSMUSG00000024301	Kifc5b	Hset|KNSL2|Kifc5a	kinesin family member C5B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-29054036-7	chr2	29053941	29054141	+	905.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166705, intron 1 of 5)	intron (NM_001166705, intron 1 of 5)	1025.0	NM_001166705	329375.0	Mm.425079	NM_001085514	ENSMUSG00000079502	Cfap77	1700101E01Rik|Gm823	cilia and flagella associated protein 77	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-74807984-4	chr13	74807894	74808094	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009817)	promoter-TSS (NM_009817)	-34.0	NM_009817	12380.0	Mm.29163	NM_009817	ENSMUSG00000021585	Cast	-	calpastatin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-8214090-4	chr14	8214000	8214200	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027782)	promoter-TSS (NM_027782)	19.0	NM_027782	71393.0	Mm.292712	NM_027782	ENSMUSG00000021752	Kctd6	5430433B02Rik|AU044285	potassium channel tetramerisation domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-16071510-4	chr4	16071416	16071616	+	932.56665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE-int|LTR|ERVL-MaLR	-57628.0	NM_145950	209212.0	Mm.46455	NM_145950	ENSMUSG00000041153	Osgin2	BC010311|C230027H09Rik	oxidative stress induced growth inhibitor family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-4162968-1	chr12	4162868	4163068	+	928.0	f0_balb.idr	intron (NM_001159537, intron 2 of 21)	intron (NM_001159537, intron 2 of 21)	28815.0	NM_138305	104111.0	Mm.489807	NM_138305	ENSMUSG00000020654	Adcy3	AC3|mKIAA0511	adenylate cyclase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111505094-1	chr12	111504994	111505194	+	541.0	f1_c57bl6.idr	Intergenic	Intergenic	-19271.0	NM_001033248	212539.0	Mm.81916	NM_001033248	ENSMUSG00000010529	Gm266	-	predicted gene 266	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-13585912-1	chr1	13585812	13586012	+	688.0	f1_balb.idr	intron (NM_028173, intron 1 of 10)	intron (NM_028173, intron 1 of 10)	3998.0	NM_028173	72265.0	Mm.28765	NM_028173	ENSMUSG00000025935	Tram1	1810049E02Rik|TRAMP	translocating chain-associating membrane protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-15562668-2	chr9	15562568	15562768	+	555.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_181816, intron 11 of 11)	intron (NM_181816, intron 11 of 11)	57173.0	NM_133214	170748.0	Mm.86572	NM_133214	ENSMUSG00000058173	Smco4	Fn5	single-pass membrane protein with coiled-coil domains 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-79930153-2	chr7	79930053	79930253	+	731.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027420, intron 2 of 5)	MIRb|SINE|MIR	5111.0	NM_027420	70420.0	Mm.34266	NM_027420	ENSMUSG00000039043	Arpin	2610034B18Rik	actin-related protein 2/3 complex inhibitor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-108759337-2	chr12	108759237	108759437	+	737.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-33974.0	NM_009537	22632.0	Mm.3868	NM_009537	ENSMUSG00000021264	Yy1	AW488674|NF-E1	YY1 transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-32405493-4	chr18	32405398	32405598	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360876, intron 1 of 17)	ORR1F|LTR|ERVL-MaLR	-27214.0	NR_045403	402767.0	Mm.385109	NR_045403	ENSMUSG00000097413	A830052D11Rik	-	RIKEN cDNA A830052D11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-20385165-4	chr9	20385041	20385241	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001004190)	promoter-TSS (NM_001004190)	17.0	NM_001004190	434377.0	Mm.379669	NM_001004190	ENSMUSG00000045519	Zfp560	2310030G09Rik|Znf560	zinc finger protein 560	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-44717063-3	chr16	44716955	44717155	+	723.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7246.0	NM_145972	212547.0	Mm.310573	NM_145972	ENSMUSG00000036208	Nepro	-	nucleolus and neural progenitor protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-100310535-2	chr8	100310435	100310635	+	803.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	893861.0	NR_132435	234624.0	Mm.124595	NM_175479	ENSMUSG00000052479	A330008L17Rik	-	RIKEN cDNA A330008L17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-118996351-4	chr7	118996217	118996417	+	783.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1106.0	NM_001195774	64297.0	Mm.103439	NM_022420	ENSMUSG00000008734	Gprc5b	AW125761|Raig2	G protein-coupled receptor, family C, group 5, member B	protein-coding	-1.17943794200251	-1.15405343839401	-1.16524426910141	-1.17443675064204	-1.17894146482318	-0.651298897862041	-0.986628054269472	-1.17279130084131	2.69714081620639	0.401382668157781	1
Merged-chr12-81669144-2	chr12	81669044	81669244	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37895.0	NM_001033149	69480.0	Mm.130002	NM_001033149	ENSMUSG00000042734	Ttc9	-	tetratricopeptide repeat domain 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-73470586-4	chr2	73470486	73470686	+	930.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	15167.0	NM_001289723	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-34171935-2	chr5	34171835	34172035	+	662.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2409.0	NM_001289803	272158.0	Mm.319286	NM_181857	ENSMUSG00000045102	Poln	POL4P	DNA polymerase N	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125410190-2	chr6	125410090	125410290	+	650.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-29686.0	NM_198604	213522.0	Mm.333396	NM_198604	ENSMUSG00000038167	Plekhg6	BC026778|Gm155	pleckstrin homology domain containing, family G (with RhoGef domain) member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-165459803-6	chr1	165459698	165459898	+	961.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028759, intron 1 of 18)	CpG	665.0	NM_028759	74106.0	Mm.227605	NM_028759	ENSMUSG00000026571	Dcaf6	1200006M05Rik|Iqwd1|PC326	DDB1 and CUL4 associated factor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-79802588-4	chr10	79802490	79802690	+	993.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023128, intron 1 of 8)	MIR|SINE|MIR	9018.0	NM_001161747	18483.0	Mm.34650	NM_023128	ENSMUSG00000035863	Palm	-	paralemmin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-64897485-2	chr12	64897391	64897591	+	638.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20420.0	NM_001025605	217648.0	Mm.341586	NM_001025605	ENSMUSG00000047227	Gm527	-	predicted gene 527	protein-coding	-1.01707008444741	-0.993492043802862	-1.00764648088546	-1.01185324898415	-1.01628940292637	-0.0453400029982381	-1.00444222658639	-1.01130848519189	3.32945445846488	0.287936268400993	1
Merged-chr11-68502633-4	chr11	68502540	68502740	+	872.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081566)	promoter-TSS (NM_001081566)	-379.0	NM_001004435	104709.0	Mm.234573	NM_001004435	ENSMUSG00000046207	Pik3r6	BB220380|p84|p84 PIKAP|p87(PIKAP)|p87PIKAP	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-31213224-1	chr8	31213124	31213324	+	683.0	f1_c57bl6.idr	intron (NM_001286425, intron 3 of 3)	intron (NM_001286425, intron 3 of 3)	25893.0	NM_001286425	171167.0	Mm.334477	NM_134161	ENSMUSG00000046152	Fut10	fuc-TX|fut10A	fucosyltransferase 10	protein-coding	-0.491468278371647	-0.927939374630806	-0.767201490490481	-0.781729425805257	-0.941507723674601	-0.925426758752514	-0.936211210574757	-0.938398658429145	-2.80960807284759	0.328620194426061	1
Merged-chr17-46283036-4	chr17	46282922	46283122	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252473)	promoter-TSS (NM_001252473)	4.0	NM_001252475	74094.0	Mm.284594	NM_028751	ENSMUSG00000012296	Tjap1	0610041D19Rik|AI415281|AW121008|Pilt|Tjp4	tight junction associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33957963-2	chr16	33957863	33958063	+	901.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001348087, intron 4 of 4)	B2_Mm1t|SINE|B2	9075.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-130654301-2	chr7	130654201	130654401	+	649.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001004468, intron 3 of 21)	intron (NM_001004468, intron 3 of 21)	-38255.0	NM_001347637	57752.0	Mm.86322	NM_021314	ENSMUSG00000030852	Tacc2	mKIAA4180	transforming, acidic coiled-coil containing protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-11716867-3	chr11	11716771	11716971	+	927.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301865, intron 3 of 6)	intron (NM_001301865, intron 3 of 6)	26694.0	NM_001301863	22778.0	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	2.25786030468373	1.84579258318812	2.22846822343732	2.63037799260997	1.82992355317537	1.85798086698424	1.97108726710884	2.64368866711156	-0.352048979685897	0.693198809766187	0.99740158133691
Merged-chr17-7898619-2	chr17	7898519	7898719	+	602.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27381.0	NM_145968	72536.0	Mm.119680	NM_145968	ENSMUSG00000033450	Tagap	2610315E15Rik|TRD|Tcd-1|Tcd1|Tcd1a|tcs-1|tcs1	T cell activation Rho GTPase activating protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70633467-2	chr8	70633332	70633532	+	834.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001330687)	promoter-TSS (NM_001330687)	-976.0	NM_001330687	23886.0	Mm.31325	NM_011819	ENSMUSG00000038508	Gdf15	MIC-1|NAG-1|SBF	growth differentiation factor 15	protein-coding	1.7618496663648	1.35355685797436	0.888935070706284	0.874333285829339	1.68830078881345	0.911469492618533	1.61830797584156	2.1967183591473	1.3066652791952	0.328902406791527	0.831468686756728
Merged-chr10-87856787-2	chr10	87856687	87856887	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CACAG)n|Simple_repeat|Simple_repeat	-1478.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-122601001-3	chr10	122600898	122601098	+	812.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31107.0	NR_040616	319272.0	Mm.411763	NR_040616	ENSMUSG00000112095	A130077B15Rik	-	RIKEN cDNA A130077B15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-20468841-4	chr11	20468721	20468921	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	-74432.0	NM_021372	58172.0	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-46752309-4	chr17	46752208	46752408	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001305990)	promoter-TSS (NM_001305990)	-94.0	NM_001305988	72029.0	Mm.240325	NM_028065	ENSMUSG00000023973	Cnpy3	1600025D17Rik|2410050O22Rik|AI413153|CAG4A|ERDA5|PRAT4A|Tnrc5	canopy FGF signaling regulator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64734688-2	chr5	64734586	64734786	+	682.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1C|Other|Other	-68837.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	0.840032608540797	0.583550603988091	1.27831175290389	1.01791646801369	0.964820285264935	0.585633193431985	0.576327635968795	1.33090629876712	-0.211128115884127	0.89467679681468	1
Merged-chr16-91793796-4	chr16	91793695	91793895	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110276, intron 5 of 15)	intron (NM_001110276, intron 5 of 15)	64424.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-127214377-3	chr1	127214209	127214409	+	812.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145128, intron 1 of 17)	B4A|SINE|B4	9323.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	1.3067591612305	0.602200569200813	0.967980979604641	1.64598833252105	0.568349463745307	1.17466736718955	0.803393427820965	0.583035487406285	-1.7838274797791	0.258319605357896	0.758397705974887
Merged-chr17-78374887-3	chr17	78374791	78374991	+	695.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_015800, exon 17 of 17)	3' UTR (NM_015800, exon 17 of 17)	43261.0	NM_001285949	225020.0	Mm.236835	NM_199448	ENSMUSG00000056121	Fez2	9030616F16|D17Ertd315e	fasciculation and elongation protein zeta 2 (zygin II)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-181887836-2	chr1	181887736	181887936	+	847.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45435.0	NM_133815	98386.0	Mm.4538	NM_133815	ENSMUSG00000004880	Lbr	AI505894|ic	lamin B receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21151078-2	chr9	21150978	21151178	+	616.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1172.0	NM_016742	12539.0	Mm.32331	NM_016742	ENSMUSG00000019471	Cdc37	p50|p50Cdc37	cell division cycle 37	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-138559973-3	chr1	138559867	138560067	+	881.861084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021605, intron 2 of 9)	intron (NM_021605, intron 2 of 9)	59790.0	NM_021605	59125.0	Mm.143817	NM_021605	ENSMUSG00000026393	Nek7	2810460C19Rik|AU020186	NIMA (never in mitosis gene a)-related expressed kinase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81082329-4	chr10	81082210	81082410	+	885.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_022653)	TTS (NM_022653)	12227.0	NM_022653	50492.0	Mm.26995	NM_022653	ENSMUSG00000004929	Thop1	AI131655|AI327041|EP24.15	thimet oligopeptidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70175861-1	chr14	70175761	70175961	+	1000.0	f0_balb.idr	intron (NM_145978, intron 1 of 9)	intron (NM_145978, intron 1 of 9)	954.0	NM_001253736	213019.0	Mm.283968	NM_145978	ENSMUSG00000022090	Pdlim2	4732462F18Rik|Slim	PDZ and LIM domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-21993853-2	chr3	21993753	21993953	+	725.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-82799.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3425548-2	chr12	3425448	3425648	+	644.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_030694, intron 1 of 2)	B2_Mm2|SINE|B2	1199.0	NR_030694	100043040.0	Mm.415417	NR_030694	ENSMUSG00000071456	1110002L01Rik	-	RIKEN cDNA 1110002L01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-111746228-2	chr8	111746128	111746328	+	998.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2379.0	NM_009954	12927.0	Mm.3758	NM_009954	ENSMUSG00000031955	Bcar1	AI385681|Cas|Crkas	breast cancer anti-estrogen resistance 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-3659080-4	chr8	3658970	3659170	+	992.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_022984)	TTS (NM_022984)	3300.0	NM_022984	57264.0	Mm.1181	NM_022984	ENSMUSG00000012705	Retn	ADSF|Fizz3|Rstn|Xcp4	resistin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-30804080-4	chr10	30803971	30804171	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358841)	promoter-TSS (NM_001358841)	-745.0	NM_001358842	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-25135709-3	chr15	25135611	25135811	+	904.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	278053.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124014990-4	chr5	124014891	124015091	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177876, intron 1 of 3)	intron (NM_177876, intron 1 of 3)	17269.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-135200733-3	chr3	135200614	135200814	+	728.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11849.0	NM_173762	229841.0	Mm.161470	NM_173762	ENSMUSG00000045328	Cenpe	312kDa|AU019344|BC049989|C530022J18|CENP-E|Kif10	centromere protein E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-149167324-4	chr4	149167245	149167445	+	974.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081274)	promoter-TSS (NM_001081274)	-640.0	NM_001081274	110208.0	Mm.252080	NM_025801	ENSMUSG00000028961	Pgd	0610042A05Rik|AU019875|C78335	phosphogluconate dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-97175211-4	chr15	97175121	97175321	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7977.0	NR_155279	102635594.0	Mm.392594	NR_155278	ENSMUSG00000116295	Gm32885	-	predicted gene, 32885	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-82815350-4	chr18	82815254	82815454	+	984.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A1|LTR|ERVL-MaLR	-40543.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-11733366-2	chr2	11733266	11733466	+	969.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_073192, exon 5 of 5)	non-coding (NR_073192, exon 5 of 5)	27654.0	NM_001271500	16169.0	Mm.200196	NM_008358	ENSMUSG00000023206	Il15ra	AA690181|IL-15RA	interleukin 15 receptor, alpha chain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-85832459-2	chr11	85832359	85832559	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_077059)	promoter-TSS (NR_077059)	-71.0	NR_077059	69909.0	Mm.440214	NR_077059	ENSMUSG00000087013	2610027K06Rik	-	RIKEN cDNA 2610027K06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-7115267-2	chr15	7115167	7115367	+	671.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14305.0	NM_001113386	16880.0	Mm.149720	NM_013584	ENSMUSG00000054263	Lifr	A230075M04Rik|AW061234|LIF	leukemia inhibitory factor receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-14174156-1	chr9	14174056	14174256	+	739.0	f0_balb.idr	Intergenic	Intergenic	-102145.0	NM_030261	75747.0	Mm.325126	NM_030261	ENSMUSG00000032009	Sesn3	5630400E15Rik|BC003348|SEST3	sestrin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89210955-3	chr3	89210856	89211056	+	941.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357367, intron 2 of 6)	intron (NM_001357367, intron 2 of 6)	3379.0	NM_013604	17827.0	Mm.280943	NM_013604	ENSMUSG00000064068	Mtx1	Gcap6|Mtx	metaxin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-113761830-4	chr11	113761747	113761947	+	938.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10032.0	NM_001163346	56699.0	Mm.293378	NM_020006	ENSMUSG00000041598	Cdc42ep4	1500041M20Rik|Borg4|CEP4	CDC42 effector protein (Rho GTPase binding) 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-31850360-2	chr17	31850260	31850460	+	891.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010831, intron 7 of 13)	intron (NM_010831, intron 7 of 13)	5444.0	NM_010831	17691.0	Mm.290941	NM_010831	ENSMUSG00000024042	Sik1	Hrt-20|Msk|Sik|Sik-1|Snf1lk	salt inducible kinase 1	protein-coding	-0.823938902086124	-1.0595308633263	-1.07036242062388	-1.07626470234862	-0.817906882576445	-0.886753774531459	-1.06791039347268	-1.07594911660578	0.65651631932531	0.829425152722695	1
Merged-chr10-43765498-2	chr10	43765398	43765598	+	730.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_040581, intron 3 of 3)	intron (NR_040581, intron 3 of 3)	19340.0	NR_040581	69443.0	Mm.484042	NR_040581	ENSMUSG00000111422	1700027J07Rik	-	RIKEN cDNA 1700027J07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80584049-2	chr10	80583949	80584149	+	565.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_145421, exon 5 of 5)	exon (NM_145421, exon 5 of 5)	6292.0	NM_145421	216169.0	Mm.29802	NM_145421	ENSMUSG00000003346	Abhd17a	1700013O15Rik|BC005632|D10Bwg1364e|Fam108a	abhydrolase domain containing 17A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-67069971-4	chr6	67069902	67070102	+	703.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040278, intron 4 of 6)	intron (NR_040278, intron 4 of 6)	-32595.0	NM_007836	13197.0	Mm.72235	NM_007836	ENSMUSG00000036390	Gadd45a	AA545191|Ddit1|GADD45	growth arrest and DNA-damage-inducible 45 alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-75844326-2	chr14	75844226	75844426	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009429)	promoter-TSS (NM_009429)	638.0	NR_045294	100043189.0	Mm.426329	NR_045294		Gm4285	-	predicted gene 4285	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-12164591-1	chr12	12164491	12164691	+	658.0	f1_balb.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-97548.0	NM_029758	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	0.800556104232143	1.57032703075197	0.859655665849947	0.650290385966402	1.37094288804447	1.07494852133432	0.661771377319438	1.25621468468223	0.372902446513275	0.800126543986964	0.998431161219273
Merged-chr4-107082370-4	chr4	107082287	107082487	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346552, intron 6 of 6)	MTD|LTR|ERVL-MaLR	-14504.0	NM_172873	242603.0	Mm.257231	NM_172873	ENSMUSG00000047636	Cdcp2	D030010E02Rik	CUB domain containing protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-152038558-2	chr4	152038458	152038658	+	636.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028727)	promoter-TSS (NM_028727)	-68.0	NM_031867	110326.0	Mm.29232	NM_031867	ENSMUSG00000028950	Tas1r1	Gpr70|T1r1|TR1	taste receptor, type 1, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-46600349-2	chr4	46600249	46600449	+	691.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164804, intron 1 of 11)	intron (NM_001164804, intron 1 of 11)	1580.0	NM_001164804	107684.0	Mm.416311	NM_178893	ENSMUSG00000028337	Coro2a	9030208C03Rik|AI563590|IR10	coronin, actin binding protein 2A	protein-coding	0.979591043986304	0.8493346544637	1.614795689338	1.56271270898046	1.13715171995395	1.69466462929586	1.62941351039721	0.825145398865768	0.262124134195558	0.845523392615669	0.998431161219273
Merged-chr8-117504755-2	chr8	117504655	117504855	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172285, intron 2 of 32)	intron (NM_172285, intron 2 of 32)	6480.0	NM_172285	234779.0	Mm.192699	NM_172285	ENSMUSG00000034330	Plcg2	PLC-gamma-2|PLCgamma2|Plcg-2	phospholipase C, gamma 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-104152527-3	chr13	104152438	104152638	+	744.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025879, intron 7 of 12)	intron (NM_025879, intron 7 of 12)	25928.0	NM_025879	66975.0	Mm.272541	NM_025879	ENSMUSG00000021711	Trappc13	2410002O22Rik|2610524F24Rik|AI451892|AU017229	trafficking protein particle complex 13	protein-coding	0.222310928092797	0.246716428476354	0.433479592876128	0.232632087837711	0.644817296106987	1.14071397283918	0.867689103486587	0.233711251665896	3.55189551779109	0.0639695139336498	1
Merged-chr2-163987109-1	chr2	163987009	163987209	+	576.0	f1_c57bl6.idr	Intergenic	MT2B|LTR|ERVL	-8088.0	NM_018753	54401.0	Mm.34319	NM_018753	ENSMUSG00000018326	Ywhab	1300003C17Rik|14-3-3b	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	protein-coding	-0.566625057405147	-0.555055767794601	-0.0981936510193541	-0.561772123544139	-0.565903313239572	-0.554200836316261	-0.558011415801803	0.0818770027982059	0.63593615513501	0.821917036728047	1
Merged-chr10-118600343-4	chr10	118600291	118600491	+	620.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43866.0	NR_104123	103214.0	Mm.30529	NR_104123	ENSMUSG00000112230	Ifngas1	AI447422|Tmevpg1	Ifng antisense RNA 1	ncRNA	1.36107062275966	1.22796328036762	0.695755236562558	1.01390313697023	1.45320525424221	1.09092030950897	0.891095839232714	0.689127129948072	-0.136901878824396	0.925121023280928	0.998431161219273
Merged-chr1-93083784-3	chr1	93083685	93083885	+	840.3666380000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001294149, intron 1 of 47)	intron (NM_001294149, intron 1 of 47)	-1305.0	NM_001294150	16560.0	Mm.276408	NM_008440	ENSMUSG00000014602	Kif1a	ATSV|C630002N23Rik|Gm1626|Kns1	kinesin family member 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100216184-4	chr7	100216090	100216290	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11417.0	NM_027629	70974.0	Mm.440524	NM_027629	ENSMUSG00000030729	Pgm2l1	4931406N15Rik|AI553438|BM32A	phosphoglucomutase 2-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-23160212-2	chr10	23160112	23160312	+	666.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010167, intron 5 of 18)	intron (NM_010167, intron 5 of 18)	189678.0	NM_001347372	14051.0	Mm.332128	NM_010167	ENSMUSG00000010461	Eya4	B130023L16Rik	EYA transcriptional coactivator and phosphatase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-34315665-3	chr1	34315589	34315789	+	986.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	117510.0	NR_039562	100628580.0		NR_039562	ENSMUSG00000092852	Mir5103	mir-5103|mmu-mir-5103|mu-mir-5103	microRNA 5103	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-88805008-3	chr18	88804916	88805116	+	692.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT2B3|LTR|ERVL	89191.0	NM_018821	54607.0	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-76929437-4	chr18	76929328	76929528	+	994.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025409)	promoter-TSS (NM_025409)	-599.0	NM_025409	66191.0	Mm.28593	NM_025409	ENSMUSG00000090000	Ier3ip1	1110057H19Rik|AI644142|AL022842|AL022863|AV026606	immediate early response 3 interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28518199-4	chr17	28518098	28518298	+	904.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-12663.0	NM_026290	67645.0	Mm.46170	NM_026290	ENSMUSG00000024223	Armc12	4930511I11Rik|AV041658	armadillo repeat containing 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-62027898-4	chr14	62027808	62028008	+	887.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	265071.0	NM_173419	239133.0	Mm.127330	NM_173419	ENSMUSG00000048281	Dleu7	BC038059	deleted in lymphocytic leukemia, 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-79770178-2	chr16	79770078	79770278	+	576.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-229198.0	NM_030146	78654.0		NM_030146		1700066C05Rik	-	RIKEN cDNA 1700066C05 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-79399948-2	chr8	79399848	79400048	+	681.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008539)	promoter-TSS (NM_008539)	-480.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-143916115-2	chr1	143916015	143916215	+	608.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	88034.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-77286981-3	chr2	77286927	77287127	+	790.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6435.0	NM_175465	228071.0	Mm.27120	NM_175465	ENSMUSG00000042272	Sestd1	1500031J16Rik|A930010O20|Solo/Trio8	SEC14 and spectrin domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21503575-2	chr9	21503475	21503675	+	581.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001253893, exon 18 of 21)	exon (NM_001253893, exon 18 of 21)	6319.0	NM_001324510	17083.0	Mm.196618	NM_010744	ENSMUSG00000032180	Tmed1	Il1rl1l|Ly84l|St2l	transmembrane p24 trafficking protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-28259604-4	chr5	28259517	28259717	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-13829.0	NM_001310512	269637.0	Mm.68286	NM_175651	ENSMUSG00000044681	Cnpy1	1500012D20Rik|9630008K15Rik|AI853839	canopy FGF signaling regulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-15277179-2	chr11	15277079	15277279	+	824.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3C|LINE|L1	677939.0	NM_001164166	432536.0	Mm.33646	NM_001164166	ENSMUSG00000084135	Pom121l12	1700054H16Rik	POM121 membrane glycoprotein-like 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-59352348-7	chr4	59352307	59352507	+	852.738098	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163288, intron 10 of 16)	intron (NM_001163288, intron 10 of 16)	86226.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	0.327863836394181	1.46311884701903	0.997597973973172	0.533592541029149	0.64959497917041	0.360230617505528	0.560604595773525	0.342030486115072	-2.36248371201628	0.177125328213191	1
Merged-chr4-146484400-2	chr4	146484300	146484500	+	693.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	-17600.0	NM_001243138	100041433.0	Mm.441741	NM_001243138	ENSMUSG00000056300	Zfp981	Gm13247	zinc finger protein 981	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-21143724-2	chr14	21143624	21143824	+	822.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_134079, intron 3 of 10)	intron (NM_134079, intron 3 of 10)	67572.0	NM_001243041	11534.0	Mm.188734	NM_134079	ENSMUSG00000039197	Adk	2310026J05Rik|5033405D03Rik|AI255373|AI987814|Ak	adenosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-6476814-2	chr11	6476714	6476914	+	641.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011221)	promoter-TSS (NM_011221)	-738.0	NM_011221	19291.0	Mm.296150	NM_011221	ENSMUSG00000094483	Purb	2310015K15Rik|AA114818|Cager-2|D11Bwg0414e	purine rich element binding protein B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-81201618-2	chr7	81201518	81201718	+	664.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12186.0	NM_008803	18584.0	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-25112283-2	chr17	25112195	25112395	+	872.599976	f1_balb.idr|f1_c57bl6.idr	intron (NM_027880, intron 3 of 20)	intron (NM_027880, intron 3 of 20)	3610.0	NM_027880	71718.0	Mm.288702	NM_027880	ENSMUSG00000024170	Telo2	1200003M09Rik|AI415602|Tel2|mKIAA0683	telomere maintenance 2	protein-coding	-1.506408258172	-1.31847805479402	-1.17305405047139	-1.49174839244863	-1.5041172280202	-1.4716328617526	-1.48140696660157	-1.49029721311822	-2.13324398881164	0.532606846307637	1
Merged-chr19-55099484-4	chr19	55099372	55099572	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008149)	promoter-TSS (NM_008149)	5.0	NM_008149	14732.0	Mm.210196	NM_008149	ENSMUSG00000024978	Gpam	GPAT|GPAT-1|GPAT1|P90	glycerol-3-phosphate acyltransferase, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-142440693-4	chr5	142440591	142440791	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199068, intron 2 of 8)	intron (NM_199068, intron 2 of 8)	-23240.0	NM_172725	231855.0	Mm.78250	NM_172725	ENSMUSG00000039623	Ap5z1	C330006K01Rik	adaptor-related protein complex 5, zeta 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-21280080-3	chr19	21280002	21280202	+	576.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009551, intron 5 of 5)	intron (NM_009551, intron 5 of 5)	7824.0	NM_009551	22682.0	Mm.292405	NM_009551	ENSMUSG00000024750	Zfand5	2310057A04Rik|5830475F03Rik|AA415485|Za20d2|Zfp216	zinc finger, AN1-type domain 5	protein-coding	1.11604178439719	0.494795321394015	0.814194011827874	0.646382694173922	1.12895793609846	0.496540142466165	0.82201518137506	0.649601454739588	0.0399132182011445	0.98009545869411	1
Merged-chr7-89338757-4	chr7	89338662	89338862	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360745)	promoter-TSS (NM_001360745)	25.0	NM_028343	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-19006321-4	chr2	19006213	19006413	+	840.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7994.0	NR_024323	74629.0	Mm.117687	NR_024323	ENSMUSG00000026736	4930426L09Rik	-	RIKEN cDNA 4930426L09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-156037395-4	chr1	156037293	156037493	+	919.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001160018)	promoter-TSS (NM_001160018)	-913.0	NM_001160018	208263.0	Mm.211654	NM_144791	ENSMUSG00000026466	Tor1aip1	LAP1|Lap1B	torsin A interacting protein 1	protein-coding	3.07100533891674	3.07802883724174	2.75503942325345	3.36947508775806	2.55999879135039	2.42018520542513	2.64780325318611	3.56655771049166	-0.337149028839803	0.619303902032251	0.978543663290116
Merged-chr11-70720052-2	chr11	70719952	70720152	+	827.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153103, intron 18 of 22)	B4A|SINE|B4	14062.0	NR_105890	102465557.0		NR_105890	ENSMUSG00000105932	Mir6925	mmu-mir-6925	microRNA 6925	ncRNA	-0.0239823325740338	-0.0125688047032068	-0.0163525841636855	0.350329941566015	0.393410902960907	0.526507131157103	-0.0155217623534165	-0.0187393212483773	1.49756751830454	0.517453185957289	1
Merged-chr4-16103121-3	chr4	16103017	16103217	+	945.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60526.0	NM_138952	192656.0	Mm.112765	NM_138952	ENSMUSG00000041135	Ripk2	2210420D18Rik|CARD3|CARDIAK|CCK|D4Bwg0615e|RICK|RIP2	receptor (TNFRSF)-interacting serine-threonine kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-44180625-3	chr1	44180530	44180730	+	961.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011729, exon 15 of 15)	exon (NM_011729, exon 15 of 15)	32886.0	NM_011729	22592.0	Mm.2213	NM_011729	ENSMUSG00000026048	Ercc5	Xpg	excision repair cross-complementing rodent repair deficiency, complementation group 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88687091-2	chr3	88686991	88687191	+	897.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_151827, intron 2 of 13)	intron (NR_151827, intron 2 of 13)	1304.0	NR_151827	74200.0	Mm.251800	NM_028814	ENSMUSG00000028060	2810403A07Rik	A430106P18Rik|AI256352|AI451678|Blom7|Khdc4|Kiaa0907	RIKEN cDNA 2810403A07 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-72317812-4	chr8	72317702	72317902	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1260.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	5.15398368626038	5.84144373106152	5.2506595814143	5.57167425107274	5.13557052547944	5.66325597500228	5.78822656555115	5.27121866430197	0.00971665153599273	0.973555006440024	0.998431161219273
Merged-chr2-32705128-2	chr2	32705028	32705228	+	928.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_130860)	TTS (NM_130860)	7656.0	NM_130860	107951.0	Mm.27557	NM_130860	ENSMUSG00000009555	Cdk9	PITALRE	cyclin-dependent kinase 9 (CDC2-related kinase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-13540990-4	chr9	13540875	13541075	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-79014.0	NM_001013813	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	4.0431952377668	4.20584454611767	4.46527565526825	4.30061242319832	4.43196233018508	4.4230204410034	3.52544970587813	4.55039378036229	0.0439039858676329	0.917201412372701	0.998431161219273
Merged-chr12-94956492-2	chr12	94956392	94956592	+	588.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	-735734.0	NM_201518	399558.0	Mm.341948	NM_201518	ENSMUSG00000047414	Flrt2	-	fibronectin leucine rich transmembrane protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-21999751-4	chr14	21999612	21999812	+	951.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	-10111.0	NM_145459	218820.0	Mm.292401	NM_145459	ENSMUSG00000039081	Zfp503	AI181838|B830002A16Rik|Nolz-1|Nolz1|Znf503	zinc finger protein 503	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-90264289-2	chr3	90264189	90264389	+	815.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356483)	promoter-TSS (NM_001356483)	-946.0	NM_001356483	229541.0	Mm.30571	NM_201407	ENSMUSG00000042404	Dennd4b	-	DENN/MADD domain containing 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43605028-1	chr4	43604928	43605128	+	700.0	f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-20534.0	NM_001099314	100039672.0	Mm.415110	NM_001099314	ENSMUSG00000078719	Msmp	Psmp	microseminoprotein, prostate associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98693420-2	chr11	98693320	98693520	+	801.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_009439, exon 7 of 12)	exon (NM_009439, exon 7 of 12)	-7893.0	NM_009971	12985.0	Mm.1238	NM_009971	ENSMUSG00000038067	Csf3	Csfg|G-CSF|MGI-IG	colony stimulating factor 3 (granulocyte)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-90165140-2	chr4	90165040	90165240	+	743.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3C|LINE|L1	-53680.0	NM_153102	236537.0	Mm.214642	NM_153102	ENSMUSG00000070902	Zfp352	2czf48	zinc finger protein 352	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53512652-4	chr4	53512530	53512730	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133891, intron 3 of 15)	L2b|LINE|L2	72217.0	NM_133891	100434.0	Mm.482207	NM_133891	ENSMUSG00000028412	Slc44a1	2210409B22Rik|4833416H08Rik|AW547365|CHTL1|CTL1|Cdw92	solute carrier family 44, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-100600130-4	chr15	100600068	100600268	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001304965)	promoter-TSS (NM_001304965)	-184.0	NM_001304965	19009.0	Mm.28825	NM_010127	ENSMUSG00000009739	Pou6f1	2310038G18Rik|C79593|Emb|cns-1	POU domain, class 6, transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-62743270-2	chr4	62743170	62743370	+	685.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	69296.0	NM_001310706	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131083734-1	chr1	131083634	131083834	+	1000.0	f0_balb.idr	intron (NM_008551, intron 1 of 9)	intron (NM_008551, intron 1 of 9)	14109.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-3036456-4	chr9	3036338	3036538	+	902.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GSAT_MM|Satellite|Satellite	2305.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69266495-4	chr11	69266397	69266597	+	971.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29475.0	NM_008192	14919.0	Mm.291816	NM_008192	ENSMUSG00000020890	Gucy2e	GC-E|GC1|ROS-GC1	guanylate cyclase 2e	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-55937402-2	chr9	55937302	55937502	+	669.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357652, intron 1 of 32)	intron (NM_001357652, intron 1 of 32)	717.0	NM_001357652	244891.0	Mm.86588	NM_175536	ENSMUSG00000034007	Scaper	C430017I08|D530014O03Rik|Zfp291	S phase cyclin A-associated protein in the ER	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-49980378-4	chr18	49980267	49980467	+	869.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177759, intron 1 of 1)	intron (NM_001177759, intron 1 of 1)	940.0	NM_001177759	106869.0	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-88379687-3	chr10	88379593	88379793	+	944.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004164, intron 1 of 20)	CpG	281.0	NM_001004164	432486.0	Mm.335190	NM_001004164	ENSMUSG00000035311	Gnptab	EG432486|mKIAA1208	N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45452511-2	chr7	45452411	45452611	+	849.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030678, intron 14 of 15)	B3|SINE|B2	7375.0	NM_010240	14325.0	Mm.30357	NM_010240	ENSMUSG00000050708	Ftl1	Ftl|Ftl-1|L-ferritin	ferritin light polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-141080536-4	chr5	141080442	141080642	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-79946.0	NM_175362	108723.0	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102732456-2	chr12	102732356	102732556	+	847.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	11205.0	NM_001142937	64113.0	Mm.291222	NM_022323	ENSMUSG00000096458	Moap1	AA987038|Map-1|Pnma4	modulator of apoptosis 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-52862126-4	chr2	52862014	52862214	+	984.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	4246.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-75848268-4	chr7	75848163	75848363	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_182782)	promoter-TSS (NM_182782)	-75.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76670971-2	chr15	76670871	76671071	+	646.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358933)	promoter-TSS (NM_001358933)	-672.0	NM_001358933	73062.0	Mm.322901	NM_033371	ENSMUSG00000033819	Ppp1r16a	2900084E10Rik|Mypt3|R75527	protein phosphatase 1, regulatory (inhibitor) subunit 16A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45488837-4	chr7	45488725	45488925	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027903)	promoter-TSS (NM_027903)	-20.0	NM_027903	71755.0	Mm.34208	NM_027903	ENSMUSG00000011382	Dhdh	1300018L09Rik|AA591799|B830008H07Rik|Xld-1|Xld1	dihydrodiol dehydrogenase (dimeric)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116130186-4	chr11	116130094	116130294	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178802, intron 1 of 5)	intron (NM_178802, intron 1 of 5)	934.0	NM_178802	338364.0	Mm.439976	NM_178802	ENSMUSG00000054517	Trim65	4732463G12Rik	tripartite motif-containing 65	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-78493696-3	chr10	78493599	78493799	+	625.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28751.0	NM_172134	216134.0	Mm.206159	NM_172134	ENSMUSG00000032788	Pdxk	2310036D04Rik|AA119688|C77999	pyridoxal (pyridoxine, vitamin B6) kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-58689384-3	chr3	58689285	58689485	+	870.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009174, intron 1 of 1)	Lx|LINE|L1	3003.0	NM_009174	20439.0	Mm.2847	NM_009174	ENSMUSG00000036432	Siah2	AA415433|Sinh2	siah E3 ubiquitin protein ligase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-92678722-2	chr16	92678630	92678830	+	828.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111022, intron 4 of 6)	intron (NM_001111022, intron 4 of 6)	18599.0	NM_001111023	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	1.8883541174747	1.40236312425961	2.22791567904255	0.926980256476513	1.6350043779607	0.964706756472425	1.17664171898726	1.60901287924159	-1.05512159564711	0.402168632653369	0.887644824805585
Merged-chr4-138217134-4	chr4	138217023	138217223	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001122897)	promoter-TSS (NM_001122897)	-4.0	NM_001356432	15441.0	Mm.348429	NM_010470	ENSMUSG00000028759	Hp1bp3	Hp1bp74	heterochromatin protein 1, binding protein 3	protein-coding	4.96375710174364	4.69461143979165	5.63293668783753	4.52289461234128	4.55535164614405	4.77919654799157	5.46839032878128	4.44429505675428	-0.183785290524114	0.631528085077968	0.982079922850444
Merged-chr1-71986330-3	chr1	71986196	71986396	+	725.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040454, intron 1 of 2)	intron (NR_040454, intron 1 of 2)	18899.0	NR_040454	71134.0	Mm.370574	NR_040454	ENSMUSG00000101848	4933417E11Rik	-	RIKEN cDNA 4933417E11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-22579383-1	chr17	22579283	22579483	+	791.0	f1_balb.idr	Intergenic	Intergenic	-6110.0	NM_001104573	210876.0	Mm.390947	NM_001104573	ENSMUSG00000095093	Vmn2r111	EG210876|V2rp2	vomeronasal 2, receptor 111	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-90226574-4	chr9	90226469	90226669	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 5 of 12)	intron (NM_194334, intron 5 of 12)	44200.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-100114155-2	chr12	100114055	100114255	+	905.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008947, intron 2 of 9)	RSINE1|SINE|B4	1824.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-33125757-4	chr12	33125661	33125861	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015602, intron 4 of 5)	MLT1J|LTR|ERVL-MaLR	21825.0	NR_015602	320046.0	Mm.208337	NR_015602	ENSMUSG00000052125	F730043M19Rik	-	RIKEN cDNA F730043M19 gene	ncRNA	5.98943537587624	5.44473276964387	5.31627621207489	6.09099053207154	5.94958872220849	6.12336171124967	5.2496510904791	5.97197869568819	0.115034457900683	0.684568971070181	0.996533206832645
Merged-chr17-24038517-2	chr17	24038431	24038631	+	556.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175440, intron 1 of 5)	intron (NM_175440, intron 1 of 5)	288.0	NM_175440	213171.0	Mm.133083	NM_175440	ENSMUSG00000050762	Prss27	CAPH2|Mpn|marapsin	protease, serine 27	protein-coding	-0.429214042251732	-0.417827991598363	-0.250580996164797	0.184170324455994	-0.0597224585708524	-0.416982530369655	-0.420746588533956	-0.423947990214072	-1.18999081841695	0.644606731073517	1
Merged-chr2-3418303-2	chr2	3418203	3418403	+	573.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355205, intron 1 of 3)	intron (NM_001355205, intron 1 of 3)	294.0	NM_001355210	104362.0	Mm.2688	NM_008579	ENSMUSG00000026650	Meig1	MLZ-278|Meg1	meiosis expressed gene 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59264109-3	chr15	59263989	59264189	+	869.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42859.0	NR_045613	100416830.0	Mm.490788	NR_045613	ENSMUSG00000098528	Zfp572	4930472F24Rik	zinc finger protein 572	pseudo	-1.84303373260285	-1.81303463126392	-1.82210660711932	-1.82955859819738	-1.84092785115721	-1.81106869625141	-1.8200529106377	-1.54273750312762	1.50114612804783	0.670102668014672	1
Merged-chr13-73434989-2	chr13	73434889	73435089	+	917.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32394.0	NM_145376	210992.0	Mm.284649	NM_145376	ENSMUSG00000021608	Lpcat1	2900035H07Rik|Aytl2|BB137372|BC005662|C87117|LPCAT|rd11	lysophosphatidylcholine acyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-13841329-2	chr9	13841229	13841429	+	705.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_176836, intron 9 of 9)	intron (NM_176836, intron 9 of 9)	13613.0	NM_176836	72826.0	Mm.246174	NM_176836	ENSMUSG00000037808	Fam76b	2810485I05Rik|C78303	family with sequence similarity 76, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139284824-3	chr5	139284723	139284923	+	777.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172723, intron 4 of 10)	intron (NM_172723, intron 4 of 10)	31326.0	NM_001163316	67604.0	Mm.270137	NM_026269	ENSMUSG00000025858	Get4	1110007L15Rik|AW412535|Cee	golgi to ER traffic protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-17869959-2	chr10	17869859	17870059	+	841.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	73740.0	NM_138628	378431.0	Mm.283493	NM_138628	ENSMUSG00000039891	Txlnb	2310001N14Rik|Mdp77	taxilin beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-17779005-4	chr6	17778975	17779175	+	958.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022332, intron 1 of 15)	B3A|SINE|B2	29905.0	NM_001083315	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	1.39248161892806	3.17223811270436	1.71334100224292	2.28227197477432	0.958739493136452	1.06289049424425	1.72873159279692	1.96244484252481	-2.04596244622225	0.0675303232752483	0.390097867830591
Merged-chr3-90065806-2	chr3	90065706	90065906	+	706.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028567, exon 4 of 4)	3' UTR (NM_028567, exon 4 of 4)	3010.0	NM_028567	73545.0	Mm.482512	NM_028567	ENSMUSG00000027942	1700094D03Rik	-	RIKEN cDNA 1700094D03 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-21383748-4	chr17	21383655	21383855	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172486)	promoter-TSS (NM_172486)	7.0	NM_172486	210503.0	Mm.33443	NM_172486	ENSMUSG00000062743	Zfp677	A830058L05Rik|Tce8	zinc finger protein 677	protein-coding	5.73541636856234	5.90508294389691	6.74461390641423	5.22399710171843	5.08259869047891	5.01501057093864	6.11620092231026	4.56792498830737	-0.77867539727735	0.0368984432139724	0.272827149762474
Merged-chr10-62547072-4	chr10	62546981	62547181	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19636.0	NM_001358965	19073.0	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-29885386-4	chr11	29885281	29885481	+	971.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146016, intron 5 of 41)	intron (NM_146016, intron 5 of 41)	-59713.0	NM_176829	216622.0	Mm.443260	NM_176829	ENSMUSG00000078157	4931440F15Rik	Fem1ab	RIKEN cDNA 4931440F15 gene	protein-coding	-0.752703249331578	-1.19327662759868	-1.20367200772054	-1.21221108246634	-1.07350664517746	-1.1910239053609	-1.2013187215212	-1.21068259216948	-1.39419391438984	0.678133685438574	1
Merged-chr6-108399998-4	chr6	108399923	108400123	+	995.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 31 of 61)	intron (NM_010585, intron 31 of 61)	-89720.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	1.21134574344978	1.38312513499067	1.32852583403855	0.718727986195763	1.22257015270439	0.948038136167537	0.729225654693026	1.17854488319055	-0.679229064485108	0.633833975068256	0.982417279970648
Merged-chr2-150363608-2	chr2	150363511	150363711	+	637.6999509999999	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027017)	promoter-TSS (NM_027017)	-846.0	NM_027017	69277.0	Mm.272470	NM_027017	ENSMUSG00000063364	3300002I08Rik	2900016H11Rik	RIKEN cDNA 3300002I08 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-21269765-1	chr12	21269665	21269865	+	688.0	f1_balb.idr	TTS (NM_008403)	TTS (NM_008403)	16519.0	NM_008403	16413.0	Mm.273333	NM_008403	ENSMUSG00000062352	Itgb1bp1	AI449260|AU019480|Icap1	integrin beta 1 binding protein 1	protein-coding	0.637451242293785	0.686633413149568	0.670971031717415	0.65859885882832	1.37281600819593	1.31389089772686	1.90596705275589	1.66339924588304	5.0646368539905	0.000976061415082248	0.0191352693760732
Merged-chr15-83375252-2	chr15	83375152	83375352	+	702.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_011862)	TTS (NM_011862)	-7955.0	NR_027980	69291.0	Mm.66794	NM_001033147		1700001L05Rik	-	RIKEN cDNA 1700001L05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116594095-2	chr11	116593995	116594195	+	798.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_033223, intron 1 of 4)	B4|SINE|B4	408.0	NM_009591	11298.0	Mm.42233	NM_009591	ENSMUSG00000020804	Aanat	AA-NAT|Nat-2|Nat4|Snat	arylalkylamine N-acetyltransferase	protein-coding	-0.585750136378803	-0.574740085344961	-0.578352923889335	-0.0496394507928595	-0.585064430927764	-0.573924946871814	-0.577556558535478	-0.0428439794746447	0.0283831331496041	0.992068125565279	1
Merged-chr7-71873110-3	chr7	71873034	71873234	+	915.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36561.0	NR_130995	78156.0	Mm.243818	NR_130995	ENSMUSG00000108669	4930441H08Rik	-	RIKEN cDNA 4930441H08 gene	ncRNA	1.22515803133428	2.50430533411805	2.08207623104577	2.18508756386346	2.21969396793529	3.79181720969051	2.27723746760476	3.6582833515866	2.1103348928949	0.0136340462146824	0.135864855883521
Merged-chr12-16822658-1	chr12	16822558	16822758	+	555.0	f1_c57bl6.idr	intron (NM_033270, intron 5 of 6)	intron (NM_033270, intron 5 of 6)	11693.0	NM_033270	50496.0	Mm.23296	NM_033270	ENSMUSG00000057469	E2f6	AI462434|E2F6a|E2F6b|EMA	E2F transcription factor 6	protein-coding	-0.203257462881764	-0.548774875407086	-0.740078059497165	-0.742405472908246	-0.745682401676183	-0.544429795069176	-0.739411442295372	-0.741999383518649	-2.08270126915299	0.452185964674627	1
Merged-chr3-81050042-3	chr3	81049950	81050150	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019971, intron 1 of 5)	intron (NM_019971, intron 1 of 5)	13634.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	1.64840908146675	2.2591119569919	2.48365136595759	3.27408864654739	2.79782143327237	2.9449190333344	3.03023536776335	2.54814967989827	0.532925997304484	0.498039986195249	0.936897994490085
Merged-chr16-33830167-4	chr16	33830095	33830295	+	862.0750119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 1 of 14)	CpG	530.0	NM_001145884	16419.0	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-38422479-3	chr18	38422359	38422559	+	772.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355749, intron 1 of 7)	intron (NM_001355749, intron 1 of 7)	3552.0	NM_001355749	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118102392-2	chr11	118102292	118102492	+	806.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001167746, intron 21 of 80)	intron (NM_001167746, intron 21 of 80)	26827.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128496303-2	chr10	128496203	128496403	+	842.916626	f1_balb.idr|f1_c57bl6.idr	exon (NM_172259, exon 4 of 7)	exon (NM_172259, exon 4 of 7)	2382.0	NM_172259	216459.0	Mm.291688	NM_172259	ENSMUSG00000039824	Myl6b	5730437E04Rik|BC037527|MLC1SA	myosin, light polypeptide 6B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-106364431-4	chr8	106364329	106364529	+	872.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME1|LINE|L1	-26441.0	NM_021491	58994.0	Mm.23298	NM_021491	ENSMUSG00000031906	Smpd3	4631433G07Rik|AI427456|AW537966|fro|nSMase2	sphingomyelin phosphodiesterase 3, neutral	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-105975556-2	chr1	105975456	105975656	+	737.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14726.0	NR_151625	635504.0	Mm.359717	NR_151625		Gm7160	EG635504	predicted gene 7160	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-91523787-2	chr6	91523687	91523887	+	839.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7752.0	NM_026309	67678.0	Mm.246693	NM_026309	ENSMUSG00000034192	Lsm3	1010001J12Rik|2610005D18Rik|6030401D18Rik|SMX4|USS2	LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-63254080-3	chr13	63253981	63254181	+	938.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289926, intron 13 of 15)	intron (NM_001289926, intron 13 of 15)	14052.0	NR_110521	72061.0	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-58830605-2	chr7	58830505	58830705	+	952.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	172403.0	NM_009728	11982.0	Mm.135129	NM_009728	ENSMUSG00000025324	Atp10a	Atp10c|pfatp	ATPase, class V, type 10A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-11398604-3	chr2	11398506	11398706	+	877.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040615)	promoter-TSS (NR_040615)	-106.0	NR_040615	77543.0	Mm.490670	NR_040615	ENSMUSG00000102674	8030442B05Rik	-	RIKEN cDNA 8030442B05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21598710-2	chr9	21598610	21598810	+	772.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5879.0	NM_138303	74766.0	Mm.475712	NM_138303	ENSMUSG00000032182	Yipf2	1300010K09Rik	Yip1 domain family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-37979212-3	chr10	37979114	37979314	+	880.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-196560.0	NR_131035	75877.0	Mm.402094	NR_131035	ENSMUSG00000111234	4930591E09Rik	-	RIKEN cDNA 4930591E09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-48832663-4	chr6	48832583	48832783	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8305.0	NM_023056	65963.0	Mm.28385	NM_023056	ENSMUSG00000029810	Tmem176b	1810009M01Rik|Clast1|Lr8	transmembrane protein 176B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-34246225-1	chr19	34246125	34246325	+	549.0	f1_balb.idr	exon (NM_007392, exon 6 of 9)	exon (NM_007392, exon 6 of 9)	9148.0	NM_007392	11475.0	Mm.213025	NM_007392	ENSMUSG00000035783	Acta2	0610041G09Rik|Actvs|SMAalpha|SMalphaA|a-SMA|alphaSMA	actin, alpha 2, smooth muscle, aorta	protein-coding	0.151482955302662	0.813591634273958	0.165751309457776	0.16040603456565	0.308435883487084	0.552622003820986	0.167275444976274	0.919920370976652	0.985351807356782	0.619917456220184	1
Merged-chr4-122955503-4	chr4	122955390	122955590	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029662, intron 3 of 13)	intron (NM_029662, intron 3 of 13)	5698.0	NM_029662	76574.0	Mm.331842	NM_029662	ENSMUSG00000028655	Mfsd2a	1700018O18Rik|Mfsd2|NLS1	major facilitator superfamily domain containing 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-41764283-2	chr5	41764183	41764383	+	700.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007524)	promoter-TSS (NM_007524)	-63.0	NM_007524	12020.0	Mm.2530	NM_007524	ENSMUSG00000049691	Nkx3-2	Bapx1|NKX3.2|Nkx-3.2	NK3 homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-67244101-4	chr7	67243993	67244193	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291195, intron 8 of 10)	intron (NM_001291195, intron 8 of 10)	21477.0	NM_001191051	75099.0	Mm.121691	NM_175215	ENSMUSG00000043831	Lysmd4	4930506D23Rik	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88963421-2	chr3	88963321	88963521	+	709.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-2391.0	NM_138679	192195.0	Mm.130752	NM_138679	ENSMUSG00000028053	Ash1l	8030453L17Rik|Ash1|E430018P19Rik|Kmt2h	ASH1 like histone lysine methyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-34368118-4	chr6	34368011	34368211	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008012, intron 9 of 9)	intron (NM_008012, intron 9 of 9)	13965.0	NM_008012	14187.0	Mm.5378	NM_008012	ENSMUSG00000029762	Akr1b8	FR-1|Fgfrp|Fgrp	aldo-keto reductase family 1, member B8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88555270-2	chr3	88555170	88555370	+	635.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_033526, intron 1 of 10)	intron (NM_033526, intron 1 of 10)	1554.0	NM_033526	94232.0	Mm.303059	NM_033526	ENSMUSG00000008604	Ubqln4	A1Up|A1u|AI663987|CIP75|UBIN	ubiquilin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-78343522-4	chr11	78343401	78343601	+	868.9249880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011676)	promoter-TSS (NM_011676)	6.0	NM_011676	22248.0	Mm.284811	NM_011676	ENSMUSG00000002058	Unc119	D11Bhm52|HRG4|MRG4|Rg4|Rtg4|Unc119h	unc-119 lipid binding chaperone	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120039841-4	chr11	120039772	120039972	+	972.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198785, intron 1 of 13)	intron (NM_001198785, intron 1 of 13)	1909.0	NM_001198787	11302.0	Mm.6826	NM_007377	ENSMUSG00000025375	Aatk	AATYK|aatyk1|mKIAA0641	apoptosis-associated tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-90018695-4	chr7	90018577	90018777	+	940.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20B1|LTR|ERVK	-10482.0	NR_110365	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	2.56264269136468	1.74076999767479	2.47928721012386	3.11526221809421	2.66233739064665	2.15790709795838	1.91089947626976	2.42225232765879	-0.537497133526327	0.523487000662197	0.948187958023104
Merged-chr4-12501270-4	chr4	12501173	12501373	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-329258.0	NM_026558	68099.0	Mm.25340	NM_026558	ENSMUSG00000028218	Fam92a	6720467C03Rik|Fam92a1	family with sequence similarity 92, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-86575700-4	chr4	86575596	86575796	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178376)	promoter-TSS (NM_178376)	23.0	NM_178376	68441.0	Mm.31178	NM_178376	ENSMUSG00000070934	Rraga	1300010C19Rik|AI255374|FIP-1|RAGA	Ras-related GTP binding A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-21785941-4	chr19	21785845	21786045	+	904.741699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031997, intron 2 of 24)	intron (NM_031997, intron 2 of 24)	7605.0	NM_031997	83921.0	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-44955789-2	chr1	44955689	44955889	+	570.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	-210840.0	NR_040602	75066.0	Mm.416932	NR_040602	ENSMUSG00000101701	4930521E06Rik	-	RIKEN cDNA 4930521E06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-83640847-2	chr7	83640747	83640947	+	570.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_023377, exon 6 of 6)	3' UTR (NM_023377, exon 6 of 6)	8830.0	NM_023377	170460.0	Mm.357953	NM_023377	ENSMUSG00000046027	Stard5	2310058G22Rik|AI607880|D7Ertd152e	StAR-related lipid transfer (START) domain containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-163754491-3	chr2	163754395	163754595	+	949.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4256.0	NM_001272052	11486.0	Mm.388	NM_007398	ENSMUSG00000017697	Ada	-	adenosine deaminase	protein-coding	1.72329420872692	1.25417875463456	2.49153445632465	3.13678709668635	1.87848157004493	1.95533393049409	2.04392270229586	1.82832271638395	-1.03617835135609	0.293733901915146	0.797936457776133
Merged-chr6-71950829-4	chr6	71950728	71950928	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009088, exon 18 of 34)	exon (NM_009088, exon 18 of 34)	41775.0	NM_009088	20019.0	Mm.135581	NM_009088	ENSMUSG00000049553	Polr1a	194kDa|2900087K15Rik|3010014K16Rik|RPA194|Rpo1-4|mRPA1	polymerase (RNA) I polypeptide A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-28488386-3	chr6	28488292	28488492	+	700.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019776, intron 1 of 23)	CR1_Mam|LINE|CR1	8044.0	NM_019776	56463.0	Mm.439987	NM_019776	ENSMUSG00000001424	Snd1	AL033314|Tudor-SN	staphylococcal nuclease and tudor domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-23585132-4	chr13	23585036	23585236	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001290530)	TTS (NM_001290530)	834.0	NM_001290530	319179.0	Mm.440391	NM_178194	ENSMUSG00000047246	Hist1h2be	-	histone cluster 1, H2be	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-79557198-2	chr14	79557098	79557298	+	812.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007920, intron 2 of 8)	B4A|SINE|B4	-30462.0	NM_026474	67955.0	Mm.18972	NM_026474	ENSMUSG00000022024	Sugt1	2410174K12Rik|SGT1	SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100805674-3	chr11	100805583	100805783	+	716.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113563, intron 2 of 18)	intron (NM_001113563, intron 2 of 18)	16887.0	NM_011489	20851.0	Mm.34064	NM_011489	ENSMUSG00000020919	Stat5b	-	signal transducer and activator of transcription 5B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-108456141-4	chr4	108456036	108456236	+	801.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3290.0	NM_175472	230594.0	Mm.25181	NM_175472	ENSMUSG00000034610	Zcchc11	6030404K05Rik|9230115F04Rik|PPAPD3|mKIAA0191	zinc finger, CCHC domain containing 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-108660790-4	chr5	108660708	108660908	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199011)	promoter-TSS (NM_199011)	22.0	NM_001357029	110524.0	Mm.260921	NM_199011	ENSMUSG00000004815	Dgkq	110kDa|DAGK|DAGK7|Dagk4|Dgkd	diacylglycerol kinase, theta	protein-coding	4.55346398315429	4.57643907850958	5.47485303998055	4.25007470102166	4.73673147949073	4.86891593596131	5.18990429802424	5.01874577126254	0.201676898714004	0.585495980882724	0.967422986407123
Merged-chr10-87861140-2	chr10	87861040	87861240	+	789.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001111276)	promoter-TSS (NM_001111276)	29.0	NM_001111276	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-10461698-4	chr10	10461607	10461807	+	715.520813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127353, intron 1 of 36)	intron (NM_001127353, intron 1 of 36)	10607.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	3.27943386939083	3.15014722480341	3.32240637931065	3.05287627099119	3.431984301748	3.94804336761657	1.65795071948777	2.86143292330765	0.0299642758895836	0.966168202808849	0.998431161219273
Merged-chr17-84110187-4	chr17	84110091	84110291	+	974.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31531.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-106333769-2	chr9	106333669	106333869	+	562.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027354, intron 10 of 10)	intron (NM_027354, intron 10 of 10)	-34863.0	NM_153459	235584.0	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96105570-3	chr3	96105463	96105663	+	638.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025614, intron 1 of 11)	intron (NM_001025614, intron 1 of 11)	1036.0	NM_001025614	229603.0	Mm.272336	NM_001025613	ENSMUSG00000038495	Otud7b	2900060B22Rik|4930463P07Rik|AI462125|CEZANNE|Trabid2|Za20d1	OTU domain containing 7B	protein-coding	1.89790779394078	0.860544434526416	2.65964540274231	0.818054887533956	1.36048035425569	1.71955932141887	0.842237502292939	1.27203029226667	-1.3343512109878	0.312905080424557	0.81460331728638
Merged-chr6-15726634-4	chr6	15726533	15726733	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175088, intron 2 of 4)	intron (NM_175088, intron 2 of 4)	5972.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-79687919-4	chr15	79687831	79688031	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028792)	promoter-TSS (NM_028792)	-59.0	NM_028792	74158.0	Mm.323393	NM_028792	ENSMUSG00000022426	Josd1	1300006C06Rik|mKIAA0063	Josephin domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-57343133-2	chr17	57343033	57343233	+	978.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-15553.0	NM_001355723	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5592056-4	chr19	5591955	5592155	+	856.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9818.0	NM_026616	68209.0	Mm.246200	NM_026616	ENSMUSG00000024925	Rnaseh2c	1500026D16Rik|AYP1	ribonuclease H2, subunit C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-95805215-4	chr15	95805126	95805326	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 1 of 19)	intron (NM_175344, intron 1 of 19)	14383.0	NM_001253813	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-80883338-4	chr13	80883224	80883424	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_153410)	promoter-TSS (NR_153410)	-60.0	NR_153410	105171.0	Mm.423137	NM_001042591	ENSMUSG00000074794	Arrdc3	AI450344|mKIAA1376	arrestin domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24722795-3	chr17	24722752	24722952	+	803.402771	f1_balb.idr|f1_c57bl6.idr	TTS (NM_008503)	TTS (NM_008503)	1536.0	NM_026684	68342.0	Mm.1129	NM_026684	ENSMUSG00000040048	Ndufb10	0610011B04Rik|22kDa|PDSW	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 10	protein-coding	1.53075577901488	0.834801387354113	1.02587955178341	1.00242078180641	1.54527426912117	0.837816022082895	1.59400426255364	1.63564127398179	1.21113469219061	0.372825716655261	0.865215270489328
Merged-chr14-118986858-4	chr14	118986741	118986941	+	790.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001081252, exon 39 of 39)	3' UTR (NM_001081252, exon 39 of 39)	48909.0	NM_008929	100037258.0	Mm.12616	NM_008929	ENSMUSG00000022136	Dnajc3	AA408985|AU067833|Dnajc3a|Dnajc3b|Prkri|mp58|p58|p58IPK	DnaJ heat shock protein family (Hsp40) member C3	protein-coding	1.15782022660577	0.359806507935872	0.346463586483875	0.335918092806464	0.523474133412977	1.85185583583478	0.34943718967366	0.749088505842352	1.68791170488378	0.328641353349657	0.831163355288614
Merged-chr15-38301780-3	chr15	38301749	38301949	+	922.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1138.0	NM_001289471	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-27874085-4	chr15	27873977	27874177	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081302, intron 10 of 56)	intron (NM_001081302, intron 10 of 56)	151771.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-111102455-4	chr10	111102384	111102584	+	914.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62318.0	NM_001003717	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-8441195-3	chr8	8441108	8441308	+	818.044434	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	219565.0	NM_010111	13642.0	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-114831522-3	chr13	114831442	114831642	+	752.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13305.0	NM_001113374	17434.0	Mm.19027	NM_013826	ENSMUSG00000015536	Mocs2	AI415403	molybdenum cofactor synthesis 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115069232-1	chr5	115069132	115069332	+	790.0	f1_c57bl6.idr	intron (NM_029012, intron 2 of 10)	MLT1B|LTR|ERVL-MaLR	38730.0	NM_001271591	100502825.0	Mm.361657	NM_001271590		Rpl37rt	EyeLinc4|Gm13826	ribosomal protein L37, retrotransposed	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-89870297-2	chr16	89870197	89870397	+	945.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009384, intron 6 of 27)	B3|SINE|B2	-51945.0	NM_001145887	21844.0	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-108449013-5	chr5	108448906	108449106	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172883)	promoter-TSS (NM_172883)	94.0	NM_001359977	243197.0	Mm.106818	NM_172883	ENSMUSG00000029490	Mfsd7a	4732482E20Rik|Mfsd7|Slc49a3	major facilitator superfamily domain containing 7A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-8832936-2	chr16	8832836	8833036	+	665.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081400, intron 2 of 3)	B2_Mm2|SINE|B2	2836.0	NM_001081400	69053.0	Mm.390868	NM_001081400	ENSMUSG00000022507	1810013L24Rik	1110017P05Rik|3010002C02Rik|AA792997|AW124177|Gm19906|R74903	RIKEN cDNA 1810013L24 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-84096026-4	chr6	84095931	84096131	+	783.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077694, intron 17 of 54)	intron (NM_001077694, intron 17 of 54)	76645.0	NM_021469	26903.0	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-52758754-2	chr3	52758654	52758854	+	664.833374	f1_balb.idr|f1_c57bl6.idr	intron (NR_038079, intron 1 of 3)	intron (NR_038079, intron 1 of 3)	19030.0	NR_038079	329639.0	Mm.131245	NR_038079	ENSMUSG00000102785	Gm2447	100039832|A530017F20	predicted gene 2447	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-18872949-4	chr2	18872867	18873067	+	699.012512	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355147, intron 3 of 8)	intron (NM_001355147, intron 3 of 8)	-71149.0	NR_131254	66774.0	Mm.87075	NR_131254	ENSMUSG00000097638	Carlr	4933439G12Rik|Carl	cardiac and apoptosis-related long non-coding RNA	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-74839128-4	chr11	74839028	74839228	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010813, intron 4 of 5)	intron (NM_010813, intron 4 of 5)	8204.0	NM_010813	17428.0	Mm.3759	NM_010813	ENSMUSG00000000282	Mnt	Rox|bHLHd3	max binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75589096-2	chr11	75588996	75589196	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008850, intron 1 of 11)	intron (NM_008850, intron 1 of 11)	1017.0	NM_008850	18738.0	Mm.3128	NM_008850	ENSMUSG00000017781	Pitpna	Pitpn|vb|vibrator	phosphatidylinositol transfer protein, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-7009339-2	chr19	7009239	7009439	+	717.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001362399, intron 6 of 14)	B2_Mm1t|SINE|B2	10130.0	NM_153795	108101.0	Mm.157591	NM_153795	ENSMUSG00000024965	Fermt3	C79673|Kindlin3	fermitin family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-71218589-2	chr10	71218489	71218689	+	751.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16844.0	NR_131003	78638.0	Mm.71171	NR_131003	ENSMUSG00000112028	1700113B09Rik	-	RIKEN cDNA 1700113B09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-107889963-5	chr4	107889818	107890018	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347160)	promoter-TSS (NM_001347160)	19.0	NM_028754	74098.0	Mm.274853	NM_028754	ENSMUSG00000028608	0610037L13Rik	1110008H16Rik	RIKEN cDNA 0610037L13 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-75055667-2	chr14	75055567	75055767	+	586.833374	f1_balb.idr|f1_c57bl6.idr	intron (NR_030568, intron 2 of 3)	intron (NR_030568, intron 2 of 3)	39640.0	NM_198642	271221.0	Mm.320280	NM_198642	ENSMUSG00000034959	Rubcnl	5031414D18Rik|Gm744|Gm911|Kiaa0226l	RUN and cysteine rich domain containing beclin 1 interacting protein like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-40324513-4	chr1	40324428	40324628	+	997.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133193)	promoter-TSS (NM_133193)	-61.0	NM_001356478	107527.0	Mm.155583	NM_133193	ENSMUSG00000070942	Il1rl2	AI481289|AW551444|IL-1Rrp2	interleukin 1 receptor-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117677199-4	chr10	117677108	117677308	+	924.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027468, intron 7 of 8)	intron (NM_027468, intron 7 of 8)	33550.0	NM_010786	17246.0	Mm.22670	NM_010786	ENSMUSG00000020184	Mdm2	1700007J15Rik|AA415488|Mdm-2	transformed mouse 3T3 cell double minute 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-109255405-4	chr4	109255268	109255468	+	969.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001285895)	TTS (NM_001285895)	19736.0	NM_001033226	108802.0	Mm.318248	NM_001033226	ENSMUSG00000028558	Calr4	4933403L16Rik|AU017583	calreticulin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-92525099-4	chr5	92524951	92525151	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19394.0	NM_007644	12492.0	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-51557429-3	chr6	51557320	51557520	+	778.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361577, intron 1 of 6)	ORR1A3|LTR|ERVL-MaLR	12127.0	NM_001361577	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-31313472-4	chr10	31313368	31313568	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027168)	promoter-TSS (NM_027168)	63.0	NM_027168	69692.0	Mm.245537	NM_027168	ENSMUSG00000000295	Hddc2	2310057G13Rik	HD domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-82138772-4	chr15	82138669	82138869	+	843.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_137170, intron 5 of 5)	intron (NR_137170, intron 5 of 5)	-8500.0	NM_033218	20788.0	Mm.38016	NM_033218	ENSMUSG00000022463	Srebf2	AI608257|SREBP-2|SREBP2|SREBP2gc|bHLHd2|lop13|nuc	sterol regulatory element binding factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-49773186-2	chr8	49773086	49773286	+	720.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3B|LINE|L1	-594926.0	NR_046067	100039954.0	Mm.400419	NR_046067	ENSMUSG00000110281	Gm2516	-	predicted gene 2516	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-88335741-2	chr10	88335641	88335841	+	652.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027878, intron 4 of 6)	ORR1D1|LTR|ERVL-MaLR	21334.0	NM_027878	71712.0	Mm.35450	NM_027878	ENSMUSG00000020057	Dram1	1200002N14Rik|Dram	DNA-damage regulated autophagy modulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-32684138-2	chr11	32684038	32684238	+	562.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271347, intron 2 of 12)	intron (NM_001271347, intron 2 of 12)	41583.0	NM_001271347	103583.0	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-20049527-1	chr19	20049427	20049627	+	581.0	f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	341144.0	NM_010730	16952.0	Mm.248360	NM_010730	ENSMUSG00000024659	Anxa1	Anx-1|Anx-A1|C430014K04Rik|Lpc-1|Lpc1	annexin A1	protein-coding	-1.50561175621786	-1.47331375025452	-1.02203377115094	-1.49110398925286	-1.50334449591826	-1.47119716082604	-1.48086985756939	-1.48966786617048	-2.07776723614574	0.550394407909386	1
Merged-chr7-128356967-2	chr7	128356867	128357067	+	874.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58836.0	NM_145590	233913.0	Mm.220880	NM_145590	ENSMUSG00000030780	BC017158	-	cDNA sequence BC017158	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107548266-4	chr9	107548176	107548376	+	891.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053253, intron 2 of 11)	intron (NM_053253, intron 2 of 11)	966.0	NM_053253	114602.0	Mm.28331	NM_053253	ENSMUSG00000010044	Zmynd10	Blu	zinc finger, MYND domain containing 10	protein-coding	2.82414551069272	3.17352720686023	2.55173999067612	2.47615232718055	2.84809184918705	1.37159278329944	1.33155777622059	1.7757862044517	-1.58517257702692	0.0934631794250816	0.473807746009302
Merged-chr15-84948882-2	chr15	84948782	84948982	+	579.75	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001033273, exon 10 of 10)	3' UTR (NM_001033273, exon 10 of 10)	2741.0	NR_037206	100526461.0		NR_037206	ENSMUSG00000080441	Mir1249	mir-1249|mmu-mir-1249	microRNA 1249	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-70139953-2	chr12	70139853	70140053	+	729.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14218.0	NM_001195033	100504285.0	Mm.291105	NM_001195033	ENSMUSG00000090121	Abhd12b	Gm804	abhydrolase domain containing 12B	protein-coding	1.28017467283342	2.33298084691355	1.71169326033418	0.92322590680684	1.29116024369513	2.35252930372493	1.57785002766945	0.926507219485097	-0.0578069296943085	0.962683785502811	0.998431161219273
Merged-chr14-105898545-2	chr14	105898445	105898645	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1726.0	NM_011897	24064.0	Mm.89982	NM_011897	ENSMUSG00000022114	Spry2	sprouty2	sprouty RTK signaling antagonist 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3851770-4	chr19	3851671	3851871	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013490)	promoter-TSS (NM_013490)	-2.0	NM_001271496	12660.0	Mm.225505	NM_013490	ENSMUSG00000024843	Chka	CK|CK/EK-alpha|Chetk-alpha|Chk|ChoK|EK|EtnK-alpha	choline kinase alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-26828566-4	chr10	26828472	26828672	+	990.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176837, intron 1 of 14)	L3b|LINE|CR1	56060.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-64132143-2	chr15	64132043	64132243	+	719.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 15 of 28)	intron (NM_001276461, intron 15 of 28)	-71695.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	-1.58994551673671	-1.55912852307891	-1.56844783632235	-1.57610299769523	-1.18549093183599	-1.55710898902261	-1.56633814807757	-1.57473272746952	1.78703309985663	0.610309988231842	1
Merged-chr1-92708410-4	chr1	92708300	92708500	+	924.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59559.0	NM_153114	260301.0	Mm.219545	NM_153114	ENSMUSG00000044055	Otos	OTOSP	otospiralin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-3910763-4	chr11	3910656	3910856	+	916.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153142, intron 1 of 1)	intron (NM_153142, intron 1 of 1)	3908.0	NM_153142	103710.0	Mm.171514	NM_153142	ENSMUSG00000048807	Slc35e4	A330108F03Rik|AI414849|AI536442	solute carrier family 35, member E4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-60989294-3	chr18	60989203	60989403	+	888.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24896.0	NM_201353	240332.0	Mm.39846	NM_201353	ENSMUSG00000052026	Slc6a7	AW455934|PROT	solute carrier family 6 (neurotransmitter transporter, L-proline), member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-120294287-2	chr2	120294187	120294387	+	892.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5218.0	NM_001024137	78390.0	Mm.330507	NM_001024137	ENSMUSG00000070719	Pla2g4d	2610311B01Rik|Pla2delta|cPLA2delta	phospholipase A2, group IVD	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166745985-4	chr2	166745882	166746082	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32150.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-140817030-4	chr6	140816927	140817127	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L4_A_Mam|LINE|RTE-X	190142.0	NM_001309436	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-186704509-3	chr1	186704419	186704619	+	817.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001329107, exon 1 of 8)	exon (NM_001329107, exon 1 of 8)	1470.0	NM_009367	21808.0	Mm.18213	NM_009367	ENSMUSG00000039239	Tgfb2	BB105277|Tgf-beta2|Tgfb-2	transforming growth factor, beta 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-127487438-3	chr3	127487349	127487549	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001327938, intron 1 of 47)	intron (NM_001327938, intron 1 of 47)	11666.0	NM_001327938	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3297932-2	chr19	3297805	3298005	+	741.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	8985.0	NR_105950	102465594.0		NR_105950	ENSMUSG00000099261	Mir6984	Gm27771|mmu-mir-6984	microRNA 6984	ncRNA	1.30613526750544	0.845553028506383	2.17970099003222	1.3871391001122	1.31850876296757	0.849989355873011	2.19986217548923	0.812318254409839	-0.249337674519097	0.854964579204558	0.998431161219273
Merged-chr11-30224755-1	chr11	30224655	30224855	+	869.5	f0_balb.idr	Intergenic	B3A|SINE|B2	-4983.0	NM_175836	20742.0	Mm.123110	NM_009260	ENSMUSG00000020315	Sptbn1	9930031C03Rik|AL033301|SPTB2|Spnb-2|Spnb2|elf1|elf3|mKIAA4049	spectrin beta, non-erythrocytic 1	protein-coding	2.10070694501549	1.29877224712338	2.21090232065232	0.99715102719976	1.35645471575292	1.04423517741228	2.39744793053821	1.72703567014251	-0.0456627701165799	0.969902319977666	0.998431161219273
Merged-chr17-47395643-5	chr17	47395504	47395704	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008189, exon 2 of 4)	exon (NM_008189, exon 2 of 4)	5002.0	NM_008189	14913.0	Mm.16224	NM_008189	ENSMUSG00000023982	Guca1a	GC-A|Gcap1|Guca1|mGCAP1	guanylate cyclase activator 1a (retina)	protein-coding	4.38580658201322	3.83555691748814	4.41281366350434	3.36640220261828	3.91008157713067	3.19474929065731	2.9515898596315	1.65501792425126	-1.31867494540212	0.0392498490730921	0.282027223411168
Merged-chr15-28722186-2	chr15	28722086	28722286	+	556.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	518420.0	NM_133365	110082.0	Mm.248464	NM_133365	ENSMUSG00000022262	Dnah5	AU022615|Dnahc5|Mdnah5|b2b1134Clo|b2b1154Clo|b2b1537Clo|b2b1565Clo|b2b3491Clo|b2b601Clo|mKIAA1603	dynein, axonemal, heavy chain 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-60405682-2	chr2	60405582	60405782	+	704.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5843.0	NR_046065	100039176.0	Mm.261790	NR_046065	ENSMUSG00000087283	Gm13580	-	predicted gene 13580	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115441570-2	chr5	115441426	115441626	+	918.708374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008629, intron 9 of 14)	intron (NM_008629, intron 9 of 14)	11841.0	NM_008629	17690.0	Mm.5077	NM_008629	ENSMUSG00000054256	Msi1	Msi1h|Musahi1|m-Msi-1	musashi RNA-binding protein 1	protein-coding	0.557968602498113	0.428152640619703	1.31832581859139	0.741198634141119	1.01778040493329	0.815844645477151	0.421384933954749	0.413891150889918	-0.606819624824151	0.721516743580964	1
Merged-chr12-76948903-4	chr12	76948835	76949035	+	960.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361663, intron 3 of 4)	intron (NM_001361663, intron 3 of 4)	13313.0	NM_008558	17187.0	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-62108312-1	chr15	62108212	62108412	+	901.0	f0_balb.idr	intron (NR_132746, intron 2 of 6)	intron (NR_132746, intron 2 of 6)	69055.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-121426030-2	chr14	121425930	121426130	+	916.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10B|LTR|ERVL	-46800.0	NM_145465	223255.0	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-23753493-2	chr15	23753393	23753593	+	558.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1VL4|LINE|L1	717030.0	NM_001081299	320865.0	Mm.241965	NM_001081299	ENSMUSG00000040420	Cdh18	B230220E17Rik|Cdh14l|Tg(GFAP-APOE_i4)1Hol	cadherin 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-53777463-1	chr1	53777363	53777563	+	629.0	f0_balb.idr	intron (NM_133810, intron 1 of 7)	intron (NM_133810, intron 1 of 7)	7752.0	NM_133810	98267.0	Mm.25559	NM_133810	ENSMUSG00000026094	Stk17b	3110009A03Rik|AI120141|Drak2	serine/threonine kinase 17b (apoptosis-inducing)	protein-coding	2.05789196252226	2.13092822097266	1.00312434909555	0.982036280468948	2.37690484821486	1.31218023332115	1.00902509595055	2.50922901105947	0.763443701406697	0.546874874214261	0.957629043069512
Merged-chr2-166957023-3	chr2	166956943	166957143	+	650.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_111895, intron 3 of 11)	intron (NR_111895, intron 3 of 11)	7674.0	NR_111895	20853.0	Mm.73276	NM_011490	ENSMUSG00000039536	Stau1	5830401L18Rik|AW549911|C85792|Stau	staufen double-stranded RNA binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-23149510-6	chr8	23149454	23149654	+	935.074402	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001282148)	promoter-TSS (NM_001282148)	31.0	NM_001282148	101056408.0	Mm.475778	NM_001282148		Gm15816	-	predicted gene 15816	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97492741-1	chr6	97492641	97492841	+	563.0	f1_balb.idr	intron (NM_145148, intron 2 of 23)	MER20|DNA|hAT-Charlie	-4921.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0.507625136744504	0.540198358244919	0.529671463585115	1.12145992275531	0.509698520137124	1.23423429060841	1.17830754976112	1.33241225410931	1.95886797704225	0.253620055257109	0.751694505775946
Merged-chr6-32479873-4	chr6	32479718	32479918	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175750, intron 3 of 31)	intron (NM_175750, intron 3 of 31)	-31323.0	NR_040277	319849.0	Mm.440860	NR_040277	ENSMUSG00000086763	Plxna4os1	B230378P21Rik	plexin A4, opposite strand 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-97211410-4	chr3	97211305	97211505	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029933, intron 7 of 9)	intron (NM_029933, intron 7 of 9)	15959.0	NM_029933	77578.0	Mm.226175	NM_029933	ENSMUSG00000038256	Bcl9	2610202E01Rik|8030475K17Rik|A330041G23Rik|Gm130	B cell CLL/lymphoma 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70066170-4	chr14	70066063	70066263	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11282.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-35931494-2	chr3	35931403	35931603	+	620.5	f0_balb.idr|f0_c57.idr	intron (NM_001205361, intron 1 of 6)	intron (NM_001205361, intron 1 of 6)	831.0	NM_001205362	114893.0	Mm.374810	NM_033623	ENSMUSG00000027708	Dcun1d1	Rp42|SCCRO|Tes3|pTes3	DCN1, defective in cullin neddylation 1, domain containing 1 (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-121378111-2	chr10	121378011	121378211	+	715.6875	f1_balb.idr|f1_c57bl6.idr	exon (NM_029364, exon 6 of 14)	exon (NM_029364, exon 6 of 14)	13021.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-74797669-3	chr14	74797612	74797812	+	862.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033439, intron 13 of 19)	intron (NM_001033439, intron 13 of 19)	65415.0	NM_016903	13885.0	Mm.38055	NM_016903	ENSMUSG00000021996	Esd	Es-10|Es10|FGH|sid478	esterase D/formylglutathione hydrolase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-93718253-3	chr13	93718161	93718361	+	945.6222529999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028772, intron 13 of 15)	MTE2a|LTR|ERVL-MaLR	914.0	NR_045086	105364.0	Mm.443795	NR_045086	ENSMUSG00000087334	AW495222	-	expressed sequence AW495222	ncRNA	2.67756140222367	2.55674444734835	2.07581224989464	1.89119724148878	1.36729445569931	1.03257019706408	1.00417411483905	0.978866729419513	-4.22701514373113	0.00143040782662479	0.0260441329643934
Merged-chr17-43569500-4	chr17	43569391	43569591	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013737, intron 1 of 11)	intron (NM_013737, intron 1 of 11)	1040.0	NM_013737	27226.0	Mm.9277	NM_013737	ENSMUSG00000023913	Pla2g7	PAF-AH|R75400	phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	protein-coding	3.04583608572521	2.59912412835115	3.53482889526079	2.06681913385466	3.07177705483465	2.61963111656427	4.19501031003538	3.22961979859567	0.804922496668201	0.249262709114634	0.747698903845194
Merged-chr4-133208043-2	chr4	133207937	133208137	+	631.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4499.0	NM_008154	14748.0	Mm.4721	NM_008154	ENSMUSG00000049649	Gpr3	Gpcr20|Gpcr21|Gpcr3	G-protein coupled receptor 3	protein-coding	1.34022079686082	2.68160229566212	2.45786545681341	2.72864870106393	2.86183706463523	3.21162178697686	3.45129120917247	1.9066642780132	1.07658158853272	0.199467505708812	0.682994044947012
Merged-chr18-25537013-2	chr18	25536913	25537113	+	587.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001362304, intron 3 of 12)	B2_Mm1t|SINE|B2	142735.0	NM_001362337	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-111674843-3	chr14	111674757	111674957	+	727.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198865)	promoter-TSS (NM_198865)	-258.0	NM_198865	75409.0	Mm.235097	NM_029273	ENSMUSG00000033214	Slitrk5	2610019D03Rik	SLIT and NTRK-like family, member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-8508472-1	chr12	8508372	8508572	+	541.0	f0_c57.idr	Intergenic	RLTR28|LTR|ERVL	-8463.0	NM_007483	11852.0	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	0.290108839327971	-0.120040991358038	-0.139618675843854	-0.308575926594683	-0.0582115184782707	-0.300977559984434	-0.304810380164883	-0.308065424681767	-1.90693805900315	0.422262174783497	1
Merged-chr16-29606842-3	chr16	29606727	29606927	+	845.3444820000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133752, intron 7 of 28)	intron (NM_133752, intron 7 of 28)	27493.0	NM_001199177	74143.0	Mm.274285	NM_133752	ENSMUSG00000038084	Opa1	1200011N24Rik|AI225888|AI847218|lilr3|mKIAA0567	OPA1, mitochondrial dynamin like GTPase	protein-coding	2.07840288394226	1.33095935458298	2.5006791995509	1.7303341738093	2.79293705648464	2.05274509605893	3.27548022540729	1.91840693426668	1.41541732728476	0.126701753518619	0.55689342891744
Merged-chr2-128258235-1	chr2	128258135	128258335	+	691.0	f1_balb.idr	Intergenic	Intergenic	130660.0	NM_001284410	12125.0	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	0.0696798059835031	0.0884041355052254	0.0822870781119578	0.623234647948815	0.814520019804603	0.0897808672512254	0.557783131157179	0.0783835824817231	1.23584101913021	0.571555891672507	1
Merged-chr8-86884265-4	chr8	86884155	86884355	+	849.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030563, intron 1 of 6)	intron (NM_030563, intron 1 of 6)	1003.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	2.7637117459172	3.41573469389519	2.6824192375792	3.07451999609816	2.24901349936455	2.91224400744021	2.57729455517519	2.4985910365968	-0.847820057612016	0.223358261523342	0.714791840691861
Merged-chr9-14124501-2	chr9	14124401	14124601	+	851.8333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-151800.0	NM_030261	75747.0	Mm.325126	NM_030261	ENSMUSG00000032009	Sesn3	5630400E15Rik|BC003348|SEST3	sestrin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-75572476-1	chr12	75572376	75572576	+	622.0	f0_balb.idr	intron (NM_012024, intron 2 of 13)	intron (NM_012024, intron 2 of 13)	23724.0	NM_012024	26932.0	Mm.259626	NM_012024	ENSMUSG00000021051	Ppp2r5e	4633401M22Rik|AI449017|B56beta	protein phosphatase 2, regulatory subunit B', epsilon	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-32608383-3	chr11	32608297	32608497	+	635.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 12 of 18)	intron (NM_009288, intron 12 of 18)	-34158.0	NM_001271348	103583.0	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111458021-2	chr12	111457968	111458168	+	853.650024	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15407.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-96723861-4	chr9	96723764	96723964	+	991.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175537, intron 1 of 2)	intron (NM_175537, intron 1 of 2)	-4014.0	NM_001359959	245007.0	Mm.485954	NM_175537	ENSMUSG00000040433	Zbtb38	A930014K01Rik|CIBZ	zinc finger and BTB domain containing 38	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-165660942-3	chr1	165660844	165661044	+	870.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038846, intron 2 of 5)	intron (NM_001038846, intron 2 of 5)	-26403.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31389256-2	chr14	31389156	31389356	+	993.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347585, intron 2 of 7)	MER33|DNA|hAT-Charlie	28421.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-19584309-4	chr10	19584209	19584409	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7640.0	NM_010511	15979.0	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-11437974-2	chr8	11437874	11438074	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_009932, exon 34 of 48)	exon (NM_009932, exon 34 of 48)	-39955.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-89747668-4	chr10	89747507	89747707	+	962.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029166, intron 1 of 20)	intron (NM_029166, intron 1 of 20)	2616.0	NM_029166	75089.0	Mm.268922	NM_029166	ENSMUSG00000019951	Uhrf1bp1l	2010319N22Rik|4930506D01Rik|AA589495|C80672|E030041M21Rik|mKIAA0701	UHRF1 (ICBP90) binding protein 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-59727621-4	chr9	59727526	59727726	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	19862.0	NM_001033498	546134.0	Mm.297580	NM_001033498	ENSMUSG00000074259	Gramd2	BC064463|Gramd2a	GRAM domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-40560913-2	chr12	40560813	40561013	+	932.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	Lx4A|LINE|L1	114860.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-63850290-2	chr17	63850190	63850390	+	673.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13691.0	NM_001037997	14158.0	Mm.23039	NM_008000	ENSMUSG00000000127	Fer	AV082135|C330004K01Rik|Fert|Fert2	fer (fms/fps related) protein kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-85555332-4	chr8	85555225	85555425	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019794)	promoter-TSS (NM_019794)	-54.0	NM_019794	56445.0	Mm.475573	NM_019794	ENSMUSG00000031701	Dnaja2	1500017M13Rik|2010206B19Rik|DNAJ|DNJ3|Dnaj3|HIRIP4|PRO3015|mDj3	DnaJ heat shock protein family (Hsp40) member A2	protein-coding	3.36697401876116	2.61295083424432	3.50629299088894	3.02879481597533	2.47869203604293	3.24389276853914	3.04127597970378	2.94892422689383	-0.400132470561916	0.532837352463147	0.952082138848632
Merged-chr9-70791642-3	chr9	70791541	70791741	+	942.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	112659.0	NM_007399	11487.0	Mm.3037	NM_007399	ENSMUSG00000054693	Adam10	1700031C13Rik|MADM|kuz|kuzbanian	a disintegrin and metallopeptidase domain 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-127184211-2	chr3	127184111	127184311	+	556.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001327938, intron 1 of 47)	intron (NM_001327938, intron 1 of 47)	22906.0	NR_105029	100862268.0	Mm.444603	NR_105029	ENSMUSG00000097456	LOC100862268	-	uncharacterized LOC100862268	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-101679380-4	chr2	101679316	101679516	+	981.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303273, intron 1 of 6)	intron (NM_001303273, intron 1 of 6)	996.0	NM_001303273	22034.0	Mm.292729	NM_009424	ENSMUSG00000027164	Traf6	2310003F17Rik|AI851288|C630032O20Rik	TNF receptor-associated factor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-63997135-2	chr15	63997035	63997235	+	733.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_144846, intron 1 of 11)	intron (NM_144846, intron 1 of 11)	931.0	NM_001360035	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83067770-1	chr11	83067670	83067870	+	842.6666869999999	f0_balb.idr	intron (NM_011408, intron 1 of 1)	MTC|LTR|ERVL-MaLR	2658.0	NM_011408	20556.0	Mm.278689	NM_011408	ENSMUSG00000072620	Slfn2	Shlf2	schlafen 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-54990562-2	chr11	54990462	54990662	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_138556, intron 19 of 24)	intron (NR_138556, intron 19 of 24)	-27622.0	NM_001271455	57783.0	Mm.259671	NM_021327	ENSMUSG00000020400	Tnip1	ABIN|ABIN-1|ABIN1|AU018810|Naf1|Nef|VAN	TNFAIP3 interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70017776-2	chr11	70017676	70017876	+	695.875	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001109752)	promoter-TSS (NM_001109752)	-829.0	NM_001109752	13385.0	Mm.27256	NM_007864	ENSMUSG00000020886	Dlg4	Dlgh4|PSD-95|PSD95|SAP90|SAP90A	discs large MAGUK scaffold protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-79768648-2	chr10	79768548	79768748	+	856.7000119999999	f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 3 of 4)	intron (NR_038088, intron 3 of 4)	-1696.0	NR_027505	70294.0	Mm.466670	NM_144528	ENSMUSG00000035890	Rnf126	2610010O19Rik	ring finger protein 126	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-67932772-3	chr14	67932648	67932848	+	979.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177780, intron 1 of 51)	intron (NM_177780, intron 1 of 51)	824.0	NM_177780	68813.0	Mm.258155	NM_177780	ENSMUSG00000044447	Dock5	1110060D06Rik|AI666732|AI956923|BC016533|E130320D18|lr2|rlc	dedicator of cytokinesis 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-5125943-4	chr7	5125837	5126037	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009028)	promoter-TSS (NM_009028)	13.0	NM_009028	19428.0	Mm.322186	NM_009028	ENSMUSG00000083649	Rasl2-9	M2|Ran|Ran/M2|Rasl2-9-ps	RAS-like, family 2, locus 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78790838-1	chr15	78790738	78790938	+	600.0	f1_balb.idr	intron (NM_130859, intron 8 of 20)	intron (NM_130859, intron 8 of 20)	12204.0	NM_130859	105844.0	Mm.17629	NM_130859	ENSMUSG00000033170	Card10	AI449026|Bimp1|Carma3	caspase recruitment domain family, member 10	protein-coding	0.746830111870658	0.370782863561555	0.362699606902853	0.35642628469291	0.756114600901571	1.1406651963211	0.364486960264408	1.03013250731653	2.38219341465825	0.199514281739601	1
Merged-chr10-81336294-2	chr10	81336194	81336394	+	914.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6972.0	NM_148951	209047.0	Mm.218755	NM_148951	ENSMUSG00000034872	Gipc3	Ahl5|Rgs19ip3	GIPC PDZ domain containing family, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-21986385-4	chr3	21986290	21986490	+	885.19165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-90262.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-6513105-4	chr4	6512983	6513183	+	872.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58812.0	NM_010945	18201.0	Mm.3059	NM_010945	ENSMUSG00000028245	Nsmaf	AA959567|C630007J05|Fan	neutral sphingomyelinase (N-SMase) activation associated factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-88418132-1	chr15	88418032	88418232	+	869.0	f1_balb.idr	Intergenic	Intergenic	103258.0	NR_045281	328579.0	Mm.146839	NR_045281	ENSMUSG00000116331	B230214G05Rik	B230214G05	RIKEN cDNA B230214G05 gene	ncRNA	-0.71130231568759	-0.70102214656695	-0.704394417924642	-0.706993412218017	-0.0572929790681324	-0.700261438186002	-0.368742196611942	-0.706539554804392	3.29194738851887	0.25047583944879	1
Merged-chr12-86242364-3	chr12	86242242	86242442	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027405, intron 1 of 9)	intron (NM_027405, intron 1 of 9)	484.0	NM_001324488	70373.0	Mm.252967	NM_027405	ENSMUSG00000021254	Gpatch2l	1700020O03Rik|4732487G21Rik|A630090I05Rik|Kiaa1152	G patch domain containing 2 like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-121438705-2	chr5	121438605	121438805	+	646.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172722, intron 21 of 23)	intron (NM_172722, intron 21 of 23)	13769.0	NM_026129	67397.0	Mm.154570	NM_026129	ENSMUSG00000029616	Erp29	1200015M03Rik|2810446M09Rik|AW209030|Erp28|Erp31|PDI-Db	endoplasmic reticulum protein 29	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-119633614-2	chr4	119633514	119633714	+	648.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4118.0	NM_008190	14915.0	Mm.2614	NM_008190	ENSMUSG00000023247	Guca2a	Guca2	guanylate cyclase activator 2a (guanylin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-75219906-2	chr1	75219806	75220006	+	834.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009447)	promoter-TSS (NM_009447)	-612.0	NM_001313724	22145.0	Mm.1155	NM_009447	ENSMUSG00000026202	Tuba4a	M[a]4|Tuba4	tubulin, alpha 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-25754418-4	chr8	25754305	25754505	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028102)	promoter-TSS (NM_028102)	8.0	NM_001361595	72108.0	Mm.246875	NM_028102	ENSMUSG00000061313	Ddhd2	2010305K11Rik|SAMWD1|mKIAA0725	DDHD domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95284515-2	chr3	95284415	95284615	+	594.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133858, intron 1 of 9)	intron (NM_133858, intron 1 of 9)	1580.0	NM_199475	75007.0	Mm.279287	NM_133858	ENSMUSG00000038712	Mindy1	1810005H09Rik|4930504E06Rik|AA562754|AA960384|AW561904|Fam63a|cI-40|mKIAA1390|ni	MINDY lysine 48 deubiquitinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-32158463-3	chr6	32158366	32158566	+	715.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175750, intron 29 of 31)	intron (NM_175750, intron 29 of 31)	108178.0	NM_029587	76382.0	Mm.23510	NM_029587	ENSMUSG00000029766	1700012A03Rik	AI429084	RIKEN cDNA 1700012A03 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78606388-2	chr15	78606288	78606488	+	786.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_028195, intron 4 of 12)	intron (NM_028195, intron 4 of 12)	9341.0	NM_028195	72318.0	Mm.32911	NM_028195	ENSMUSG00000018008	Cyth4	2510004M07Rik|5830469K17Rik|AI467541|Pscd4|mFLJ00017	cytohesin 4	protein-coding	0.660984853121114	1.05904992634962	0.523575780171643	1.19179570514984	0.505873524770234	1.06947971173953	0.525652919561159	1.2002133299557	-0.103871558462035	0.949740173527511	1
Merged-chr8-37886923-1	chr8	37886823	37887023	+	541.0	f1_c57bl6.idr	intron (NM_145841, intron 2 of 7)	MTD|LTR|ERVL-MaLR	365279.0	NR_029884	723860.0		NR_029884	ENSMUSG00000065457	Mir383	Mirn383|mir-383|mmu-mir-383	microRNA 383	ncRNA	0.955626473626401	0.598316424954488	2.05854178211343	2.43056474328901	0.966820310851422	0.603114731082025	0.58136370198611	0.562023208828381	-3.88345719362603	0.0146470410306849	0.142719435532884
Merged-chr1-156437980-3	chr1	156437882	156438082	+	916.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009230, intron 10 of 15)	intron (NM_009230, intron 10 of 15)	-17067.0	NM_001346967	77352.0	Mm.428709	NM_001033180	ENSMUSG00000026601	Axdnd1	9430070O13Rik|Gm979	axonemal dynein light chain domain containing 1	protein-coding	2.56403192656485	3.48680162440352	2.80083956220727	3.36042265559707	3.6813837153152	3.90925024796338	4.08100142378692	3.60667029734057	1.12953522130413	0.0406599158419416	0.287753246326159
Merged-chr16-55967044-4	chr16	55966944	55967144	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024218, intron 2 of 5)	intron (NM_024218, intron 2 of 5)	769.0	NM_024218	68193.0	Mm.29221	NM_024218	ENSMUSG00000098274	Rpl24	0610008L05Rik|Bst	ribosomal protein L24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-40853173-4	chr4	40853080	40853280	+	985.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022305, intron 1 of 5)	intron (NM_022305, intron 1 of 5)	1357.0	NM_022305	14595.0	Mm.15622	NM_022305	ENSMUSG00000028413	B4galt1	B-1,4-GalT|B-1,4-GalT1|GalT|Ggtb|Ggtb2|b4Gal-T1|beta-1,4-GalT|beta-1,4-GalT1|beta4Gal-T1	UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1	protein-coding	2.28244575769446	2.55941598255655	2.3540019488767	2.2884079483422	2.49337305968399	2.88695829594037	2.70093603439809	1.40697872817959	0.25061322076633	0.77105194515642	0.998431161219273
Merged-chr7-19626614-2	chr7	19626514	19626714	+	735.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009046, intron 2 of 10)	PB1D7|SINE|Alu	2824.0	NM_001290457	19698.0	Mm.1741	NM_009046	ENSMUSG00000002983	Relb	shep	avian reticuloendotheliosis viral (v-rel) oncogene related B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129626071-4	chr2	129625973	129626173	+	949.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355158, intron 7 of 8)	intron (NM_001355158, intron 7 of 8)	30611.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-50836371-2	chr14	50836271	50836471	+	710.166687	f1_balb.idr|f1_c57bl6.idr	exon (NM_009351, exon 40 of 55)	exon (NM_009351, exon 40 of 55)	28455.0	NM_009632	11546.0	Mm.281482	NM_009632	ENSMUSG00000036023	Parp2	ADPRT-2|ARTD2|Adprt2|Adprtl2|Aspartl2|C78626|PARP-2|mPARP-2|pADPRT-2	poly (ADP-ribose) polymerase family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-144700937-2	chr3	144700837	144701037	+	559.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001282037, intron 6 of 10)	B4A|SINE|B4	19398.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-75904458-3	chr18	75904341	75904541	+	766.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145356, intron 2 of 4)	intron (NM_145356, intron 2 of 4)	84263.0	NM_145356	207259.0	Mm.159332	NM_145356	ENSMUSG00000044646	Zbtb7c	B230208J24Rik|Kr-pok|Zbtb36	zinc finger and BTB domain containing 7C	protein-coding	4.97547649629732	4.38875753463335	4.49317090974894	5.09991099595809	2.25750988411062	3.39291662142363	3.01155687756236	2.41134005177336	-2.75477654110246	8.98659131394016e-08	8.25161652433577e-06
Merged-chr3-89212578-2	chr3	89212478	89212678	+	833.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357367, intron 2 of 6)	intron (NM_001357367, intron 2 of 6)	1757.0	NM_013604	17827.0	Mm.280943	NM_013604	ENSMUSG00000064068	Mtx1	Gcap6|Mtx	metaxin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101657912-4	chr11	101657816	101658016	+	979.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7625.0	NM_025404	80981.0	Mm.266840	NM_025404	ENSMUSG00000034936	Arl4d	1110036H21Rik|ARL6|AW456149|Arf4l|Arfl4|Arl5	ADP-ribosylation factor-like 4D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83838398-4	chr6	83838291	83838491	+	773.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16_Mm|LTR|ERVK	-6650.0	NM_146169	232164.0	Mm.404420	NM_146169	ENSMUSG00000045896	Paip2b	-	poly(A) binding protein interacting protein 2B	protein-coding	-0.831488918218026	-0.479551260907689	-0.654646054488758	-0.827910835801585	-0.830958010095246	-0.472607764394586	-0.825124843116665	-0.827533066087017	-0.601877053596792	0.83378488900824	1
Merged-chr15-99111754-2	chr15	99111654	99111854	+	800.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	12270.0	NM_176835	72778.0	Mm.30544	NM_176835	ENSMUSG00000038009	Dnajc22	2810451A06Rik|AI506245	DnaJ heat shock protein family (Hsp40) member C22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-116978402-4	chr2	116978300	116978500	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	78248.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-136852666-2	chr3	136852566	136852766	+	997.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008913, intron 2 of 13)	MLT1B|LTR|ERVL-MaLR	182600.0	NM_001293622	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-90199220-7	chr16	90199039	90199239	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CACG)n|Simple_repeat|Simple_repeat	-21603.0	NM_011434	20655.0	Mm.276325	NM_011434	ENSMUSG00000022982	Sod1	B430204E11Rik|Cu/Zn-SOD|CuZnSOD|Ipo-1|Ipo1|SODC|Sod-1	superoxide dismutase 1, soluble	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-190911772-4	chr1	190911668	190911868	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178775)	promoter-TSS (NM_178775)	2.0	NM_178775	320119.0	Mm.220912	NM_178775	ENSMUSG00000089872	Rps6kc1	AA682037|B130003F20Rik|C80612|Rpk118	ribosomal protein S6 kinase polypeptide 1	protein-coding	3.91248386707215	2.83855645969303	3.93146745581086	3.05628033176581	4.25095073938336	4.2732261889731	3.67029316571719	4.02264293159969	0.771232363725867	0.133322699044664	0.570764692507331
Merged-chr6-37143171-3	chr6	37143079	37143279	+	807.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347104, intron 2 of 32)	intron (NM_001347104, intron 2 of 32)	156797.0	NM_001081206	320127.0	Mm.119469	NM_001081206	ENSMUSG00000038665	Dgki	6430604M11Rik|C130010K08Rik	diacylglycerol kinase, iota	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118154740-2	chr11	118154640	118154840	+	808.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25521.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-11323758-3	chr10	11323656	11323856	+	996.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19689.0	NM_010146	13853.0	Mm.89946	NM_010146	ENSMUSG00000055493	Epm2a	TG-B|Tg(TcraK,TcrbK)TG-BFlv	epilepsy, progressive myoclonic epilepsy, type 2 gene alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-85023705-4	chr17	85023608	85023808	+	815.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001159497, exon 6 of 6)	exon (NM_001159497, exon 6 of 6)	-4639.0	NM_009205	20532.0	Mm.227176	NM_009205	ENSMUSG00000024131	Slc3a1	D2H|NBAT|NTAA|RBAT	solute carrier family 3, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-25009433-4	chr16	25009333	25009533	+	848.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-50206.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105375239-3	chr8	105375142	105375342	+	885.7222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081333)	promoter-TSS (NM_001081333)	-139.0	NM_001081333	102075.0	Mm.32034	NM_175321	ENSMUSG00000014782	Plekhg4	4931414L13Rik|AI448583|mFLJ00068	pleckstrin homology domain containing, family G (with RhoGef domain) member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-54961478-4	chr18	54961362	54961562	+	937.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175751, intron 2 of 9)	intron (NM_175751, intron 2 of 9)	28718.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-5116513-4	chr15	5116412	5116612	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026069)	promoter-TSS (NM_026069)	-101.0	NM_026069	67281.0	Mm.10474	NM_026069	ENSMUSG00000041841	Rpl37	3110005M08Rik	ribosomal protein L37	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-75278316-4	chr4	75278204	75278404	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025849)	promoter-TSS (NM_025849)	-12.0	NM_025849	66928.0	Mm.24332	NM_025849	ENSMUSG00000028398	Dmac1	1700027K24Rik|3110001D03Rik|Tmem261	distal membrane arm assembly complex 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-16875903-4	chr12	16875796	16875996	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19082.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	5.38595423056939	5.54726419483459	5.07722033600882	4.82647455787884	5.6953374876933	6.13403561288851	5.79717609536723	5.71895296313285	0.690472938320995	0.0127334403449665	0.129138767104147
Merged-chr19-10251276-2	chr19	10251176	10251376	+	597.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198114, intron 17 of 19)	intron (NM_198114, intron 17 of 19)	-10528.0	NM_001033481	225908.0	Mm.329716	NM_001033481	ENSMUSG00000036098	Myrf	6030439E18|Gm1804|Gm98|Mrf	myelin regulatory factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118247560-6	chr11	118247502	118247702	+	982.633301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	990.0	NM_001112699	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-31376625-2	chr3	31376525	31376725	+	689.583374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66306.0	NM_172861	241919.0	Mm.285366	NM_172861	ENSMUSG00000069072	Slc7a14	A930013N06|BC061928	solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-85249578-4	chr11	85249481	85249681	+	997.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	14415.0	NR_028329	654810.0	Mm.209580	NR_028329	ENSMUSG00000085628	Appbp2os	D630032N06Rik	amyloid beta precursor protein (cytoplasmic tail) binding protein 2, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-26896079-3	chr8	26895981	26896181	+	964.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-71658.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-121594152-2	chr14	121594052	121594252	+	705.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081039, intron 37 of 53)	intron (NM_001081039, intron 37 of 53)	-88898.0	NM_053079	56643.0	Mm.155618	NM_053079	ENSMUSG00000025557	Slc15a1	D630032F02|PECT1|PEPT1	solute carrier family 15 (oligopeptide transporter), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-124927575-4	chr2	124927475	124927675	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-140552.0	NM_175034	317750.0	Mm.330538	NM_175034	ENSMUSG00000035183	Slc24a5	F630045L20Rik|JSX|NCKX5|NCX5|Oca6	solute carrier family 24, member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122315687-4	chr8	122315593	122315793	+	801.979187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009569, intron 3 of 9)	intron (NM_009569, intron 3 of 9)	33552.0	NM_009569	22761.0	Mm.3105	NM_009569	ENSMUSG00000049577	Zfpm1	FOG|Fog1	zinc finger protein, multitype 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-86524173-4	chr6	86524106	86524306	+	878.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011865)	TTS (NM_011865)	1983.0	NM_011865	23983.0	Mm.274146	NM_011865	ENSMUSG00000051695	Pcbp1	WBP17|[a]CP-1|alphaCP-1|hnRNP E1|hnRNP-E1	poly(rC) binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-103364380-4	chr11	103364274	103364474	+	895.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183288)	promoter-TSS (NM_183288)	-682.0	NM_001205236	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133177821-2	chr4	133177725	133177925	+	856.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_153423, intron 2 of 8)	intron (NM_153423, intron 2 of 8)	-17830.0	NR_105984	102466215.0		NR_105984	ENSMUSG00000099202	Mir7017	Gm27945|mmu-mir-7017	microRNA 7017	ncRNA	2.00929106772525	2.46766130856207	2.17247573289716	2.11310336914177	2.02520360001671	1.35396216815088	2.1890738057439	2.23206213712619	-0.511493205456526	0.583417697770482	0.966599221005409
Merged-chr18-61083866-2	chr18	61083766	61083966	+	575.25	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001146268, exon 23 of 23)	3' UTR (NM_001146268, exon 23 of 23)	-21706.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-96211834-1	chr7	96211734	96211934	+	632.0	f1_balb.idr	5' UTR (NM_001310760, exon 1 of 33)	5' UTR (NM_001310760, exon 1 of 33)	163.0	NM_001310760	23966.0	Mm.254610	NM_011858	ENSMUSG00000048078	Tenm4	Doc4|ELM2|Odz4|R75022|Ten-m4|l(7)-3Rn|l7Rn3|mKIAA1302	teneurin transmembrane protein 4	protein-coding	0.100815369114526	0.572138471982482	-0.283116710073431	-0.286975020148012	-0.137741957009762	-0.277007087648752	-0.28201540975904	-0.286300317088741	-2.94656369185613	0.217096094667622	1
Merged-chr1-156465250-5	chr1	156465296	156465496	+	683.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009230, intron 2 of 15)	B2_Mm1t|SINE|B2	8932.0	NM_009230	20652.0	Mm.28099	NM_009230	ENSMUSG00000026600	Soat1	8430426K15Rik|ACAT-1|AW550831|Acact|ald|hid	sterol O-acyltransferase 1	protein-coding	2.65412632839899	2.57738323220775	1.57870186615744	2.68866967396064	3.46452265630765	3.98346780010746	3.80351351534669	3.29660854181724	2.06327464971702	0.0018298012961115	0.0312878665420646
Merged-chr5-36563302-4	chr5	36563193	36563393	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133910, intron 2 of 13)	intron (NM_133910, intron 2 of 13)	19104.0	NM_133910	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-11214892-3	chr12	11214792	11214992	+	977.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5944.0	NM_019544	56184.0	Mm.117113	NM_019544	ENSMUSG00000047002	Msgn1	Msgn|pMsgn1	mesogenin 1	protein-coding	1.22813010590095	1.0949232266203	2.11894586431169	1.04422562012695	2.37930824558807	2.09376902411425	1.54830406607189	2.70998858259814	2.14017175141091	0.0580907593276117	0.356207967075077
Merged-chr8-45410761-2	chr8	45410661	45410861	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_126166)	promoter-TSS (NM_126166)	-142.0	NM_126166	142980.0	Mm.33874	NM_126166	ENSMUSG00000031639	Tlr3	AI957183	toll-like receptor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140643546-2	chr5	140643446	140643646	+	831.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001308040, intron 1 of 12)	intron (NM_001308040, intron 1 of 12)	5485.0	NM_001308040	78339.0	Mm.28947	NM_175274	ENSMUSG00000036565	Ttyh3	2900029G13Rik|AI414930|TTY3|mTTY3	tweety family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-138976142-4	chr1	138976032	138976232	+	874.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181347, intron 1 of 20)	intron (NM_181347, intron 1 of 20)	-1525.0	NR_108103	78229.0	Mm.437838	NR_108103	ENSMUSG00000104900	4930596I21Rik	-	RIKEN cDNA 4930596I21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166968686-2	chr2	166968586	166968786	+	991.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001109905, intron 1 of 11)	intron (NM_001109905, intron 1 of 11)	-3969.0	NR_111895	20853.0	Mm.73276	NM_011490	ENSMUSG00000039536	Stau1	5830401L18Rik|AW549911|C85792|Stau	staufen double-stranded RNA binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26568180-2	chr17	26568063	26568263	+	694.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_026170, intron 1 of 9)	intron (NM_026170, intron 1 of 9)	6651.0	NM_026170	67458.0	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	-0.128399165909572	-0.11255780037325	-0.117741819883442	0.604406164076726	0.14926277940919	0.396085894680134	-0.116597990642904	-0.121045565078998	-0.12621941122616	0.956621083292061	1
Merged-chr4-151057554-4	chr4	151057460	151057660	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009498, intron 1 of 4)	CpG	393.0	NM_009498	22319.0	Mm.273930	NM_009498	ENSMUSG00000028955	Vamp3	D130027G05Rik|VAMP-3|ceb	vesicle-associated membrane protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71205754-2	chr8	71205652	71205852	+	968.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_131056, intron 1 of 4)	intron (NR_131056, intron 1 of 4)	1196.0	NR_131056	330796.0	Mm.258257	NR_131056		Gm38415	E230016D10	predicted gene, 38415	ncRNA	2.10770438968453	2.02887100442451	1.01424724701352	1.21262088667083	1.97904873811895	1.03842844993223	1.59910715524208	1.68184993285693	-0.209556824782973	0.863786322508536	0.998431161219273
Merged-chr2-60763161-2	chr2	60763061	60763261	+	599.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001141932, intron 7 of 14)	intron (NM_001141932, intron 7 of 14)	-40558.0	NM_001159564	16420.0	Mm.98193	NM_021359	ENSMUSG00000026971	Itgb6	2210409C20Rik|4831415H04Rik	integrin beta 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-117278386-2	chr6	117278286	117278486	+	810.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F|LTR|ERVL-MaLR	109851.0	NM_021704	20315.0	Mm.303231	NM_013655	ENSMUSG00000061353	Cxcl12	Pbsf|Scyb12|Sdf1|Tlsf|Tpar1	chemokine (C-X-C motif) ligand 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-115890803-1	chr4	115890703	115890903	+	567.0	f0_balb.idr	5' UTR (NM_001357060, exon 1 of 2)	5' UTR (NM_001357060, exon 1 of 2)	137.0	NM_001357060	76237.0	Mm.101606	NM_001357060	ENSMUSG00000034185	6430628N08Rik	-	RIKEN cDNA 6430628N08 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32080645-2	chr2	32080545	32080745	+	670.833374	f1_balb.idr|f1_c57bl6.idr	intron (NR_151493, intron 2 of 5)	intron (NR_151493, intron 2 of 5)	3060.0	NM_175511	241303.0	Mm.250441	NM_175511	ENSMUSG00000050592	Fam78a	A130092J06Rik	family with sequence similarity 78, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-59222459-1	chr4	59222359	59222559	+	794.0	f0_balb.idr	3' UTR (NM_011673, exon 9 of 9)	3' UTR (NM_011673, exon 9 of 9)	32909.0	NM_011673	22234.0	Mm.198803	NM_011673	ENSMUSG00000028381	Ugcg	AU043821|C80537|Epcs21|GlcT-1|Ugcgl	UDP-glucose ceramide glucosyltransferase	protein-coding	0.954188756080298	0.552099929468989	0.541087546214647	1.248523396633	1.26617006052371	1.48167877235953	0.543530058923367	0.533990954027785	0.74999925676018	0.657251859578597	0.988704682801132
Merged-chr13-113868624-2	chr13	113868524	113868724	+	587.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172595, intron 1 of 4)	intron (NM_172595, intron 1 of 4)	74116.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-54727566-4	chr11	54727473	54727673	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178626, intron 3 of 5)	intron (NM_178626, intron 3 of 5)	60130.0	NM_178626	72729.0	Mm.29476	NM_178626	ENSMUSG00000052298	Cdc42se2	2810404F18Rik|AA408783|AA536669|SPEC2	CDC42 small effector 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114724642-2	chr11	114724542	114724742	+	591.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2770.0	NM_001034878	432611.0	Mm.212764	NM_001034878	ENSMUSG00000034706	Dnaic2	C030015H18Rik|Dnai2|Gm728|b2b3405Clo	dynein, axonemal, intermediate chain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-6649853-1	chr13	6649753	6649953	+	562.0	f1_c57bl6.idr	Intergenic	Intergenic	-1082.0	NM_001291071	56421.0	Mm.273874	NM_019703	ENSMUSG00000021196	Pfkp	1200015H23Rik|9330125N24Rik|ATP-PFK|PFK-C|PFK-P	phosphofructokinase, platelet	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-6488785-2	chr18	6488685	6488885	+	627.166626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001276350)	TTS (NM_001276350)	1861.0	NR_035446	100316773.0		NR_035446	ENSMUSG00000084514	Mir1893	Mirn1893|mmu-mir-1893	microRNA 1893	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5636732-4	chr19	5636635	5636835	+	927.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009045)	promoter-TSS (NM_009045)	-755.0	NM_009045	19697.0	Mm.249966	NM_009045	ENSMUSG00000024927	Rela	p65	v-rel reticuloendotheliosis viral oncogene homolog A (avian)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150626563-4	chr4	150626482	150626682	+	850.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25592.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-108576902-1	chr6	108576802	108577002	+	787.333313	f0_balb.idr	TTS (NR_104577)	TTS (NR_104577)	46265.0	NR_040757	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	0.366565918527756	0.92107704342586	0.384398510105795	0.377733264855958	1.22459823174212	0.394896323713142	1.00709712667451	0.713048818104073	1.93811730991052	0.289677121350586	1
Merged-chr5-36497269-3	chr5	36497150	36497350	+	859.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133910, intron 12 of 13)	intron (NM_133910, intron 12 of 13)	12662.0	NM_025725	66717.0	Mm.42368	NM_025725	ENSMUSG00000050677	Ccdc96	4921513E08Rik	coiled-coil domain containing 96	protein-coding	-0.733244664950116	-0.726021895228831	-0.574269861324022	-0.587842946763757	-0.49760911104708	-0.725478649298062	-0.438018313808844	-0.729925921083205	0.905022299984596	0.73197586071221	1
Merged-chr19-5770592-2	chr19	5770492	5770692	+	813.125	f1_balb.idr|f1_c57bl6.idr	intron (NR_155264, intron 2 of 15)	intron (NR_155264, intron 2 of 15)	827.0	NM_023912	78891.0	Mm.276063	NM_023912	ENSMUSG00000024941	Scyl1	2810011O19Rik|C85140|Ntkl|mdf|mfd|p105	SCY1-like 1 (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31422613-4	chr14	31422509	31422709	+	895.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011894, intron 2 of 8)	intron (NM_011894, intron 2 of 8)	-4932.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-58937491-4	chr6	58937383	58937583	+	998.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153574, intron 17 of 17)	RLTR40|LTR|ERVK	-30357.0	NM_021432	58243.0	Mm.389747	NM_021432	ENSMUSG00000055430	Nap1l5	1110020M21Rik	nucleosome assembly protein 1-like 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-35021303-3	chr18	35021170	35021370	+	772.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66919.0	NM_010481	15526.0	Mm.209419	NM_010481	ENSMUSG00000024359	Hspa9	74kDa|Csa|Grp75|Hsc74|Hsp74|Hsp74a|Hspa9a|Mortalin|Mot-2|Mot2|Mthsp70|Pbp74	heat shock protein 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70140364-1	chr8	70140264	70140464	+	951.0	f1_c57bl6.idr	promoter-TSS (NM_001309841)	promoter-TSS (NM_001309841)	87.0	NM_001309841	72368.0	Mm.644	NM_001145552	ENSMUSG00000002345	Borcs8	2310045N01Rik|Mef2bnb	BLOC-1 related complex subunit 8	protein-coding	-0.849476341506185	-0.838670428416387	-0.281058796297338	-0.845737504789777	-0.704674119505594	-0.835947193567115	-0.84283185663297	-0.680574206957958	-1.09733776276313	0.701015886517808	1
Merged-chr18-46476016-3	chr18	46476015	46476215	+	801.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-10299.0	NR_045438	72076.0	Mm.82766	NM_028086		Mospd4	2010013H21Rik	motile sperm domain containing 4	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127302722-2	chr7	127302622	127302822	+	608.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253873, intron 7 of 30)	B4A|SINE|B4	6462.0	NM_001253874	16408.0	Mm.1618	NM_008400	ENSMUSG00000030830	Itgal	(p180)|Cd11a|LFA-1|LFA-1A|Ly-15|Ly-21	integrin alpha L	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-145861763-3	chr2	145861654	145861854	+	912.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028724, intron 9 of 12)	intron (NM_028724, intron 9 of 12)	-41487.0	NM_026425	67877.0	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	2.23908075796775	3.02528495913083	1.27895173866747	1.86376418577668	2.15765611021755	2.16302595131878	1.54204431059266	2.64499049899918	-0.192786343872793	0.845171744986442	0.998431161219273
Merged-chr16-91405786-4	chr16	91405684	91405884	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008349)	promoter-TSS (NM_008349)	-451.0	NM_008349	16155.0	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-122603350-3	chr14	122603251	122603451	+	830.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153443, intron 6 of 24)	intron (NR_153443, intron 6 of 24)	69023.0	NM_144844	110821.0	Mm.23876	NM_144844	ENSMUSG00000041650	Pcca	C79630	propionyl-Coenzyme A carboxylase, alpha polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-76529277-4	chr5	76529183	76529383	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027270)	promoter-TSS (NM_027270)	-24.0	NM_001359372	69940.0	Mm.403233	NM_027270	ENSMUSG00000036435	Exoc1	2810407P21Rik|A730011E05Rik|SEC3|Sec3l1|Sec3p	exocyst complex component 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-63895386-2	chr7	63895267	63895467	+	701.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_021366, intron 1 of 1)	MLT1C|LTR|ERVL-MaLR	-21490.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	0.921888849129971	1.31452376691304	0.799440956881228	1.44307710577485	1.37419717218573	0.810961021794056	0.801510802459515	1.7936656351755	0.619475927184932	0.677903530911531	0.994818437932722
Merged-chr6-40438819-2	chr6	40438719	40438919	+	622.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2684.0	NM_001356375	243780.0	Mm.333006	NM_175528	ENSMUSG00000037172	E330009J07Rik	AI841796|Lchn|mKIAA1147	RIKEN cDNA E330009J07 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84229023-2	chr8	84228904	84229104	+	688.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_172503, intron 4 of 13)	intron (NM_172503, intron 4 of 13)	8038.0	NM_172503	212168.0	Mm.117094	NM_172503	ENSMUSG00000035671	Zswim4	D330002I24|E130119J17Rik	zinc finger SWIM-type containing 4	protein-coding	0.301462579499615	0.322365164698211	0.315525511275062	0.941695983351561	0.688169126982447	0.323905938435699	0.896815270079727	0.743823862105328	1.02003939784299	0.590248603311162	1
Merged-chr4-130827414-3	chr4	130827302	130827502	+	815.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34865.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-73584750-4	chr12	73584655	73584855	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001313977)	promoter-TSS (NM_001313977)	-41.0	NM_001313977	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-66891459-1	chr15	66891359	66891559	+	563.0	f1_c57bl6.idr	promoter-TSS (NM_018865)	promoter-TSS (NM_018865)	66.0	NM_018865	22402.0	Mm.10222	NM_018865	ENSMUSG00000005124	Wisp1	AW146261|CCN4|Elm1	WNT1 inducible signaling pathway protein 1	protein-coding	-0.199109527210015	-0.183368046834299	-0.188513444346837	0.627509842819794	-0.198123689881464	0.021803827683634	-0.187377642401378	0.252991451017435	-0.699119048263838	0.76758500217067	1
Merged-chr12-73709034-2	chr12	73708934	73709134	+	747.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008856, intron 9 of 13)	intron (NM_008856, intron 9 of 13)	124238.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128360767-4	chr2	128360643	128360843	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028590, intron 1 of 2)	intron (NR_028590, intron 1 of 2)	68608.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102333313-4	chr12	102333194	102333394	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177620, intron 3 of 9)	intron (NM_177620, intron 3 of 9)	49653.0	NM_001161365	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-9552699-5	chr18	9552535	9552735	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MMVL30-int|LTR|ERV1	66834.0	NM_007593	26369.0	Mm.195831	NM_007593	ENSMUSG00000050996	Cetn1	caltractin	centrin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-85895698-4	chr1	85895610	85895810	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022417, intron 1 of 5)	intron (NM_022417, intron 1 of 5)	1200.0	NM_022417	64294.0	Mm.29870	NM_022417	ENSMUSG00000026223	Itm2c	3110038L02Rik|BRI3|Bricd2c|E25|E25C|ITM3	integral membrane protein 2C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-109622598-2	chr8	109622498	109622698	+	844.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039700, intron 4 of 33)	intron (NM_001039700, intron 4 of 33)	8081.0	NM_181544	244646.0	Mm.436810	NM_181544	ENSMUSG00000048827	Pkd1l3	-	polycystic kidney disease 1 like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88648910-1	chr3	88648810	88649010	+	601.0	f1_balb.idr	TTS (NM_001198911)	TTS (NM_001198911)	4232.0	NM_181817	242093.0	Mm.269130	NM_181817	ENSMUSG00000049741	Rxfp4	GPCR142|Gpr100|Rln3r2|SALPR	relaxin family peptide receptor 4	protein-coding	0.322400772060624	0.447919295294476	-0.0156245536524447	-0.0191034494332394	0.227316755960738	-0.0100700231103426	-0.0146274475345096	0.381481359517448	-0.357593635055621	0.867406548510129	1
Merged-chr2-29055247-4	chr2	29055135	29055335	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166705)	promoter-TSS (NM_001166705)	-169.0	NM_001166705	329375.0	Mm.425079	NM_001085514	ENSMUSG00000079502	Cfap77	1700101E01Rik|Gm823	cilia and flagella associated protein 77	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-95830543-4	chr4	95830425	95830625	+	907.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113412, intron 11 of 15)	intron (NM_001113412, intron 11 of 15)	136510.0	NR_045777	319247.0	Mm.473527	NM_175680	ENSMUSG00000044125	9530080O11Rik	-	RIKEN cDNA 9530080O11 gene	ncRNA	3.29423625787538	3.34047541903053	3.69743925221776	3.3918991548943	2.69519066480468	3.36456900076691	3.2548665965496	3.4087570736874	-0.382537184049324	0.50052481186483	0.938068233345726
Merged-chr11-75141697-2	chr11	75141597	75141797	+	968.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001002764, intron 14 of 18)	intron (NM_001002764, intron 14 of 18)	26455.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	-0.25874736861081	0.245566975293251	-0.238928983857946	-0.246251068168197	-0.256860337884222	-0.227594472727494	1.2682203574242	-0.244961139462087	2.61793162075177	0.25936680696596	1
Merged-chr8-120562595-2	chr8	120562495	120562695	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145896, intron 2 of 15)	intron (NM_001145896, intron 2 of 15)	23899.0	NR_106159	102466849.0		NR_106159	ENSMUSG00000098280	Mir7687	Gm27573|mmu-mir-7687	microRNA 7687	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-33256849-3	chr6	33256751	33256951	+	757.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347089, intron 1 of 9)	intron (NM_001347089, intron 1 of 9)	7723.0	NM_001347089	20336.0	Mm.265512	NM_009148	ENSMUSG00000029763	Exoc4	C78892|Sec8|Sec8l1	exocyst complex component 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30782587-4	chr2	30782500	30782700	+	999.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19137.0	NM_198000	73598.0	Mm.34166	NM_198000	ENSMUSG00000044320	1700001O22Rik	1700113K14Rik|4930549G18Rik	RIKEN cDNA 1700001O22 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-129234309-4	chr8	129234249	129234449	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153780)	promoter-TSS (NM_153780)	-303.0	NM_153780	72139.0	Mm.426514	NM_153780	ENSMUSG00000071302	2610044O15Rik8	2610044O15Rik	RIKEN cDNA 2610044O15 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117204493-2	chr11	117204393	117204593	+	626.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113486, intron 1 of 11)	intron (NM_001113486, intron 1 of 11)	4832.0	NM_001113486	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-17726269-2	chr6	17726158	17726358	+	670.5	f0_balb.idr|f1_balb.idr	intron (NM_001289624, intron 1 of 15)	intron (NM_001289624, intron 1 of 15)	-17334.0	NM_001289627	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	-0.840765188318848	-0.828820091557137	-0.833647072137853	-0.836319491836079	-0.840103136375236	-0.825874151001496	-0.640423694632345	-0.0745584918573654	3.25267216038727	0.264297595094015	1
Merged-chr6-124808850-4	chr6	124808768	124808968	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001306052)	promoter-TSS (NM_001306052)	-17.0	NM_001306052	14794.0	Mm.261906	NM_013539	ENSMUSG00000038451	Spsb2	AI461677|C9|Grcc9|SSB2	splA/ryanodine receptor domain and SOCS box containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-73472925-2	chr15	73472825	73473025	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39635.0	NR_152151	105841.0	Mm.322557	NM_001081066	ENSMUSG00000036661	Dennd3	AI447457|E030003N15Rik	DENN/MADD domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-51137997-3	chr13	51137891	51138091	+	930.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011462, intron 1 of 3)	intron (NM_011462, intron 1 of 3)	3673.0	NM_011462	20729.0	Mm.188432	NM_011462	ENSMUSG00000021395	Spin1	Spin	spindlin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-69707161-1	chr2	69707061	69707261	+	579.0	f0_c57.idr	intron (NM_177244, intron 4 of 13)	intron (NM_177244, intron 4 of 13)	5445.0	NM_177244	320720.0	Mm.289566	NM_177244	ENSMUSG00000027086	Fastkd1	5330408N05Rik|mKIAA1800	FAST kinase domains 1	protein-coding	0.825428418707208	1.07499565044375	1.4580584658881	1.28017594716021	0.567793089842036	0.590443242981257	0.583028940287643	0.576734978763577	-4.69133261706945	0.00549017902774706	0.0717030130350971
Merged-chr18-61746855-3	chr18	61746688	61746888	+	830.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_178928, exon 9 of 19)	exon (NM_178928, exon 9 of 19)	20398.0	NR_029432	68982.0	Mm.441992	NR_029432	ENSMUSG00000098702	1500015A07Rik	-	RIKEN cDNA 1500015A07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102702633-3	chr12	102702504	102702704	+	842.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172584, intron 1 of 9)	intron (NM_172584, intron 1 of 9)	2265.0	NM_172584	217837.0	Mm.482192	NM_172584	ENSMUSG00000057963	Itpk1	BC031182	inositol 1,3,4-triphosphate 5/6 kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-165771774-4	chr1	165771669	165771869	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149310, intron 4 of 4)	MIR|SINE|MIR	8011.0	NM_011804	433375.0	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-31105275-2	chr17	31105175	31105375	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009593, intron 6 of 14)	intron (NM_009593, intron 6 of 14)	24336.0	NM_011575	21786.0	Mm.4641	NM_011575	ENSMUSG00000024029	Tff3	ITF|mITF	trefoil factor 3, intestinal	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-44053132-1	chr5	44053032	44053232	+	614.0	f1_balb.idr	intron (NM_001163578, intron 3 of 22)	intron (NM_001163578, intron 3 of 22)	41636.0	NM_001163581	19126.0	Mm.6250	NM_008935	ENSMUSG00000029086	Prom1	4932416E19Rik|AC133|CD133|Prom|Prom-1|Proml1	prominin 1	protein-coding	1.88741143139299	1.30977613729816	1.06954110975916	1.92644203960089	2.10920499571488	0.857108338612429	0.838366012097937	0.821913205229811	-0.850008616785634	0.542300034651802	0.954935047166076
Merged-chr2-45039832-3	chr2	45039626	45039826	+	727.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355291, intron 2 of 9)	C-rich|Low_complexity|Low_complexity	-16549.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27273601-2	chr2	27273501	27273701	+	847.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_133905, intron 23 of 29)	intron (NR_133905, intron 23 of 29)	-26298.0	NM_138665	192166.0	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-85311211-4	chr11	85311121	85311321	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016910)	promoter-TSS (NM_016910)	-33.0	NM_016910	53892.0	Mm.45609	NM_016910	ENSMUSG00000020525	Ppm1d	AV338790|Wip1	protein phosphatase 1D magnesium-dependent, delta isoform	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-16173417-2	chr4	16173317	16173517	+	602.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045765, intron 2 of 6)	intron (NR_045765, intron 2 of 6)	9307.0	NR_045765	100415915.0	Mm.387180	NR_045765	ENSMUSG00000085112	A530072M11Rik	-	RIKEN cDNA gene A530072M11	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128232826-2	chr10	128232726	128232926	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164081, intron 1 of 28)	intron (NM_001164081, intron 1 of 28)	763.0	NM_001136082	21853.0	Mm.6458	NM_011589	ENSMUSG00000039994	Timeless	C77407|Debt69|tim	timeless circadian clock 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-38001270-2	chr18	38001173	38001373	+	611.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2304.0	NM_001205336	106952.0	Mm.247642	NM_139206	ENSMUSG00000024451	Arap3	Centd3|Drag1|E030006K04Rik|cnt-d3	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3	protein-coding	1.02572640539707	2.11913494169249	1.6073012365477	0.853354965192303	1.03328845053817	2.1370018872311	1.62190687437961	0.856040627139653	0.0399745887471913	0.975780907907119	0.998431161219273
Merged-chr6-122564823-2	chr6	122564723	122564923	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_009645)	TTS (NM_009645)	11014.0	NM_009645	11628.0	Mm.391503	NM_009645	ENSMUSG00000040627	Aicda	Aid|Arp2	activation-induced cytidine deaminase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-35546063-1	chr7	35545963	35546163	+	576.0	f0_balb.idr	Intergenic	MER20|DNA|hAT-Charlie	-8319.0	NM_028034	71981.0	Mm.47904	NM_028034	ENSMUSG00000030491	Tdrd12	2410004F06Rik|2410070K17Rik|ECAT8|EG434165|G1-476-14|repro23	tudor domain containing 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-104657022-2	chr14	104656922	104657122	+	635.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_015593, intron 1 of 5)	intron (NR_015593, intron 1 of 5)	17875.0	NR_015593	320249.0	Mm.320725	NR_015593	ENSMUSG00000115432	D130009I18Rik	-	RIKEN cDNA D130009I18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-22009159-2	chr8	22009059	22009259	+	759.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007511, intron 12 of 20)	ORR1A2|LTR|ERVL-MaLR	38563.0	NM_026459	67929.0	Mm.60688	NM_026459	ENSMUSG00000017049	Ccdc70	1700112P19Rik	coiled-coil domain containing 70	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-69265471-4	chr17	69265369	69265569	+	948.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355736, intron 12 of 21)	intron (NM_001355736, intron 12 of 21)	11737.0	NR_045428	69750.0	Mm.439063	NR_045428	ENSMUSG00000100572	2410021H03Rik	-	RIKEN cDNA 2410021H03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-119880543-4	chr7	119880439	119880639	+	981.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163703, intron 1 of 2)	intron (NM_001163703, intron 1 of 2)	14919.0	NM_173408	233805.0	Mm.31539	NM_173408	ENSMUSG00000048787	Dcun1d3	1700020A13Rik|BC030335	DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae)	protein-coding	0.875875480381964	0.327510487900792	0.316592150841192	1.06808272708461	0.295683797871556	0.329943658493148	0.319018089381398	1.57502423939168	0.417131584242086	0.826980038290878	0.998431161219273
Merged-chr7-80780059-2	chr7	80779994	80780194	+	826.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016721, intron 2 of 37)	intron (NM_016721, intron 2 of 37)	23237.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	0.867636550427863	0.595096287827196	0.952006045634487	1.17476603342976	1.10984371151573	0.597537924951013	1.61993313552612	0.577149551586582	0.659366439448556	0.67384454780045	0.99440487726309
Merged-chr14-101586214-2	chr14	101586114	101586314	+	780.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081278, intron 1 of 18)	intron (NM_001081278, intron 1 of 18)	22977.0	NM_001081278	210789.0	Mm.320639	NM_173380	ENSMUSG00000033083	Tbc1d4	5930406J04Rik|A930035N22|AV295684|As160	TBC1 domain family, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-110305210-5	chr9	110305125	110305325	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081381)	promoter-TSS (NM_001081381)	33.0	NM_001081381	72341.0	Mm.374250	NM_001081381	ENSMUSG00000054836	Elp6	2610001P13Rik|2610002I17Rik|AV159994|Tmem103	elongator acetyltransferase complex subunit 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-27018603-4	chr8	27018472	27018672	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR42-int|LTR|ERVK	-5227.0	NM_153592	244373.0	Mm.277699	NM_153592	ENSMUSG00000031483	Erlin2	BC036333|C87251|Spfh2	ER lipid raft associated 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-56901999-4	chr6	56901913	56902113	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252374)	promoter-TSS (NM_001252374)	-127.0	NM_001252374	107569.0	Mm.158936	NM_026004	ENSMUSG00000029780	Nt5c3	1600024P05Rik|2610206B05Rik|3110004A18Rik|AI842776|Nt5c3a|Nt5y|P5'N-1|P5N-1|PN-1|PN-I|PSN1|UMPH|Umph-1|Umph1|cN-III|lupin|p36	5'-nucleotidase, cytosolic III	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-113910714-3	chr5	113910623	113910823	+	807.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2017.0	NM_011779	23790.0	Mm.260158	NM_011779	ENSMUSG00000004530	Coro1c	AL022675|AW455561|AW548837	coronin, actin binding protein 1C	protein-coding	1.44453403994079	1.63283530288499	0.915850466514043	1.82382947615239	1.06391269976175	1.35003941092946	1.13142541855884	1.74398574606279	-0.525058294028076	0.673131572981432	0.99440487726309
Merged-chr17-15938183-4	chr17	15938058	15938258	+	959.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	-111572.0	NM_178615	68799.0	Mm.293466	NM_178615	ENSMUSG00000048027	Rgmb	1110059F19Rik|DRAGON	repulsive guidance molecule family member B	protein-coding	2.89507662091063	1.93423358314723	2.22480125213344	1.31846722230645	2.42181977693677	3.27741901697801	3.36298701611409	1.81917521106855	1.23331455002918	0.170086514904967	0.637554776318518
Merged-chr5-135012231-4	chr5	135012107	135012307	+	913.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001190437)	TTS (NM_001190437)	950.0	NR_026688	69812.0	Mm.18422	NR_026688	ENSMUSG00000085042	Abhd11os	2010001M06Rik|AI462243|Wbscr26|Wnscr26	abhydrolase domain containing 11, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-142765980-4	chr3	142765872	142766072	+	971.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145546, intron 1 of 6)	intron (NM_145546, intron 1 of 6)	725.0	NM_145546	229906.0	Mm.271756	NM_145546	ENSMUSG00000028271	Gtf2b	-	general transcription factor IIB	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-10602641-3	chr8	10602542	10602742	+	920.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001319151, intron 33 of 34)	ORR1E|LTR|ERVL-MaLR	279812.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-122370257-1	chr2	122370157	122370357	+	696.0	f1_balb.idr	Intergenic	Intergenic	-1339.0	NM_001013829	435684.0	Mm.458215	NM_001013829	ENSMUSG00000033256	Shf	-	Src homology 2 domain containing F	protein-coding	1.39375420142227	0.801367961230469	0.788970039622101	1.37432815364863	1.5776961230294	0.804139775687517	1.43203458765933	1.38227758369277	0.817913990621295	0.570194630327941	0.962718661854691
Merged-chr12-85686170-2	chr12	85686070	85686270	+	853.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016767)	promoter-TSS (NM_016767)	-550.0	NM_016767	53314.0	Mm.6672	NM_016767	ENSMUSG00000034266	Batf	B-ATF|SFA-2	basic leucine zipper transcription factor, ATF-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-114781674-7	chr9	114781580	114781780	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_133978, exon 1 of 5)	exon (NM_133978, exon 1 of 5)	313.0	NM_133978	102545.0	Mm.35600	NM_133978	ENSMUSG00000032436	Cmtm7	AI481279|Cklfsf7|LNV	CKLF-like MARVEL transmembrane domain containing 7	protein-coding	5.92876745645582	5.76701255628364	5.63158584423188	4.83922934886033	5.0253699290062	5.45368102312531	3.95569744004309	5.61933632713465	-0.522071262082246	0.155772957972641	0.610928767307068
Merged-chr5-149229152-4	chr5	149229054	149229254	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-35850.0	NM_001308462	11690.0	Mm.19844	NM_009663	ENSMUSG00000060063	Alox5ap	Flap	arachidonate 5-lipoxygenase activating protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-40722398-4	chr4	40722300	40722500	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029594)	promoter-TSS (NR_029594)	-68.0	NM_008298	15502.0	Mm.27897	NM_008298	ENSMUSG00000028410	Dnaja1	HSJ-2|Hsj2|Nedd7	DnaJ heat shock protein family (Hsp40) member A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126201008-2	chr7	126200908	126201108	+	725.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311143)	promoter-TSS (NM_001311143)	-507.0	NM_028816	74204.0	Mm.235663	NM_028816	ENSMUSG00000000131	Xpo6	2610005L19Rik|AL022631|C230091E20Rik|R75304|Ranbp20|exp6|mKIAA0370	exportin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-36153330-3	chr12	36153214	36153414	+	718.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025840, intron 1 of 11)	intron (NM_025840, intron 1 of 11)	3511.0	NM_025840	66912.0	Mm.288669	NM_025840	ENSMUSG00000020547	Bzw2	1110001I24Rik|Bdm2|HSPC028	basic leucine zipper and W2 domains 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76576509-5	chr15	76576419	76576619	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172960, intron 1 of 14)	CpG	160.0	NR_073123	268822.0	Mm.181624	NM_172960	ENSMUSG00000022550	Adck5	A230108P17	aarF domain containing kinase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-114928340-2	chr4	114928240	114928440	+	673.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2327.0	NM_015758	30923.0	Mm.377122	NM_015758	ENSMUSG00000044518	Foxe3	FREAC8|dyl|rct	forkhead box E3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-112760703-4	chr13	112760599	112760799	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40078.0	NM_008903	19012.0	Mm.291029	NM_008247	ENSMUSG00000021759	Plpp1	Hic53|Hpic53|LPP-1|LPP1|PAP-2a|PAP2-alpha|PAP2a|Ppap2a|mPAP	phospholipid phosphatase 1	protein-coding	5.84866867920383	5.17085451527692	6.14195599208568	5.61753017449729	5.61080683042358	5.71560299737911	5.46740766978058	5.59315561182943	-0.163481444696101	0.549923173728971	0.958882219733107
Merged-chr1-128020543-4	chr1	128020424	128020624	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285945, intron 6 of 20)	L1ME1|LINE|L1	81947.0	NM_027678	226409.0	Mm.425048	NM_027678	ENSMUSG00000036086	Zranb3	4933425L19Rik|AH2|AI316834|C730006D09	zinc finger, RAN-binding domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-53418664-2	chr19	53418564	53418764	+	552.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13A|LTR|ERVK	-28030.0	NM_172429	76479.0	Mm.313687	NM_172429	ENSMUSG00000025024	Smndc1	-	survival motor neuron domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-42256527-2	chr7	42256427	42256627	+	660.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3526.0	NM_001105058	637873.0	Mm.469899	NM_001105058	ENSMUSG00000090967	Vmn2r61	Casr-rs2|EG637873|Gprc2a-rs2	vomeronasal 2, receptor 61	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-53764900-3	chr9	53764803	53765003	+	686.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1G3|LTR|ERVL-MaLR	-6632.0	NM_028060	72022.0	Mm.26159	NM_028060	ENSMUSG00000042195	Slc35f2	1500009K05Rik|AU019213	solute carrier family 35, member F2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-64173506-4	chr9	64173396	64173596	+	986.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026507)	promoter-TSS (NM_026507)	109.0	NM_024212	67891.0	Mm.280083	NM_024212	ENSMUSG00000032399	Rpl4	2010004J23Rik	ribosomal protein L4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131905727-2	chr1	131905627	131905827	+	844.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-4731.0	NM_001145804	98415.0	Mm.246869	NM_175294	ENSMUSG00000026434	Nucks1	2700010L10Rik|8430423A01Rik|AI647518|C78391|Nucks	nuclear casein kinase and cyclin-dependent kinase substrate 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-92753438-3	chr1	92753356	92753556	+	604.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-78189.0	NM_016696	14733.0	Mm.297976	NM_016696	ENSMUSG00000034220	Gpc1	AI462976	glypican 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-20696947-1	chr18	20696847	20697047	+	1000.0	f0_c57.idr	intron (NM_019737, intron 5 of 8)	intron (NM_019737, intron 5 of 8)	-31687.0	NR_155534	102633478.0		NR_155534	ENSMUSG00000085595	Gm16090	-	predicted gene 16090	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-161963190-3	chr1	161963088	161963288	+	726.388855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001204904, intron 3 of 6)	intron (NM_001204904, intron 3 of 6)	5960.0	NM_001204905	75368.0	Mm.108728	NM_001204904	ENSMUSG00000086277	4930558K02Rik	-	RIKEN cDNA 4930558K02 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-36750585-4	chr5	36750476	36750676	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-1897.0	NM_133724	117197.0	Mm.46744	NM_133724	ENSMUSG00000060708	Bloc1s4	2610101N07Rik|Blos4|Cno	biogenesis of lysosomal organelles complex-1, subunit 4, cappuccino	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153742022-3	chr2	153741922	153742122	+	910.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007896, intron 1 of 6)	intron (NM_007896, intron 1 of 6)	735.0	NM_007896	13589.0	Mm.143877	NM_007896	ENSMUSG00000027479	Mapre1	5530600P05Rik|AI462499|AI504412|AW260097|BIM1p|D2Ertd459e|Eb1	microtubule-associated protein, RP/EB family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24696759-1	chr17	24696659	24696859	+	587.0	f1_balb.idr	promoter-TSS (NM_023040)	promoter-TSS (NM_023040)	525.0	NM_001357836	71893.0	Mm.390971	NM_027988	ENSMUSG00000019320	Noxo1	2310034C04Rik|P41NOX|P41NOXA|P41NOXB|P41NOXC|Snx28|hslt	NADPH oxidase organizer 1	protein-coding	1.78012965190877	2.00781816134049	2.63352214212487	1.13763961553879	2.5067448435121	2.16151269395019	1.16630821696621	1.74539658169692	-0.0302832204254097	0.978090951164911	0.998431161219273
Merged-chr1-51526008-2	chr1	51525908	51526108	+	610.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_151621, intron 3 of 3)	intron (NR_151621, intron 3 of 3)	-47609.0	NM_001310549	109019.0	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120763090-2	chr11	120762990	120763190	+	593.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21114.0	NM_009053	19719.0	Mm.871	NM_009053	ENSMUSG00000025158	Rfng	-	RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127339047-4	chr10	127339033	127339233	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010296, intron 2 of 12)	intron (NM_010296, intron 2 of 12)	2446.0	NM_010296	14632.0	Mm.391450	NM_010296	ENSMUSG00000025407	Gli1	AV235269|Zfp-5|Zfp5	GLI-Kruppel family member GLI1	protein-coding	1.64158485629352	1.41895864718662	2.18295247215537	0.929519963743919	2.21425580863056	0.969990495087446	1.18721079632159	1.49462620016651	-0.161440665301849	0.898024034860662	0.998431161219273
Merged-chr2-33098023-3	chr2	33097947	33098147	+	861.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355201, intron 2 of 29)	intron (NM_001355201, intron 2 of 29)	-10794.0	NM_178888	99326.0	Mm.41290	NM_178888	ENSMUSG00000038860	Garnl3	AW120551	GTPase activating RANGAP domain-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-41286611-2	chr4	41286511	41286711	+	594.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11476.0	NM_026872	68926.0	Mm.41864	NM_026872	ENSMUSG00000028433	Ubap2	1190005K07Rik|AA408600|AU045235|UBAP-2|mKIAA1491	ubiquitin-associated protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-18916241-3	chr2	18916140	18916340	+	642.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008845, intron 1 of 9)	intron (NM_008845, intron 1 of 9)	81881.0	NM_008845	18718.0	Mm.313977	NM_008845	ENSMUSG00000026737	Pip4k2a	AW742916|Pip5k2a	phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99669272-3	chr15	99669171	99669371	+	779.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1106.0	NM_009597	11419.0	Mm.440107	NM_009597	ENSMUSG00000023017	Asic1	AI843610|ASIC|ASIC1a|Accn2|B530003N02Rik|BNaC2	acid-sensing (proton-gated) ion channel 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-106628438-4	chr1	106628327	106628527	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009741, intron 1 of 1)	RCHARR1|DNA|hAT-Charlie	-81796.0	NR_106164	102466254.0		NR_106164	ENSMUSG00000098344	Mir3473f	Gm27846|mmu-mir-3473f	microRNA 3473f	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-109629003-4	chr7	109628909	109629109	+	882.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11862.0	NM_029811	76954.0	Mm.252009	NM_029811	ENSMUSG00000031024	St5	2010004M01Rik|2610305K15Rik	suppression of tumorigenicity 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127800552-4	chr7	127800433	127800633	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133943)	promoter-TSS (NM_133943)	-76.0	NM_133943	101502.0	Mm.157103	NM_133943	ENSMUSG00000042289	Hsd3b7	AI195443|BB098564	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-29044416-3	chr7	29044310	29044510	+	990.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009109, intron 83 of 105)	intron (NM_009109, intron 83 of 105)	39284.0	NR_035489	100316710.0		NR_035489	ENSMUSG00000089219	Mir1963	mir-1963|mmu-mir-1963	microRNA 1963	ncRNA	3.66855051077216	3.48197638078515	1.93270919601793	3.26827356705767	3.968481435608	3.41694245995668	1.95010081992486	3.76584425817447	0.365042781796844	0.6103488312244	0.975181810684084
Merged-chr17-72961069-4	chr17	72960966	72961166	+	962.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	42761.0	NM_029999	77889.0	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-22163358-2	chr9	22163258	22163458	+	685.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	6512.0	NM_001082532	66268.0	Mm.28924	NM_025457	ENSMUSG00000010607	Pigyl	1810008A14Rik|PIG-Y|Pigy	phosphatidylinositol glycan anchor biosynthesis, class Y-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-4934737-3	chr5	4934624	4934824	+	736.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011074, intron 11 of 14)	intron (NM_011074, intron 11 of 14)	-176508.0	NM_021457	14362.0	Mm.246003	NM_021457	ENSMUSG00000044674	Fzd1	AW227548|FZ-1|Fz1	frizzled class receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-86745652-4	chr8	86745529	86745729	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027829)	promoter-TSS (NR_027829)	-70.0	NR_027829	666945.0	Mm.391806	NR_027829		Gm10638	-	predicted gene 10638	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-84884367-4	chr4	84884268	84884468	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177385)	promoter-TSS (NM_177385)	59.0	NM_177385	338349.0	Mm.440562	NM_175275	ENSMUSG00000038070	Cntln	AI448092|B430108F07Rik|D530005L17Rik	centlein, centrosomal protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-81745676-1	chr4	81745576	81745776	+	701.0	f0_balb.idr	Intergenic	Intergenic	-258663.0	NR_030570	100124446.0		NR_030570	ENSMUSG00000077941	Mir466h	Mirn466h	microRNA 466h	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80587611-3	chr10	80587511	80587711	+	818.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145421, intron 1 of 4)	intron (NM_145421, intron 1 of 4)	2730.0	NM_145421	216169.0	Mm.29802	NM_145421	ENSMUSG00000003346	Abhd17a	1700013O15Rik|BC005632|D10Bwg1364e|Fam108a	abhydrolase domain containing 17A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-154570019-4	chr2	154569905	154570105	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291105)	promoter-TSS (NM_001291105)	-113.0	NM_007891	13555.0	Mm.18036	NM_007891	ENSMUSG00000027490	E2f1	E2F-1|Tg(Wnt1-cre)2Sor|mKIAA4009	E2F transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10449097-1	chr19	10448997	10449197	+	556.0	f1_c57bl6.idr	3' UTR (NM_173068, exon 11 of 11)	3' UTR (NM_173068, exon 11 of 11)	8350.0	NM_001111140	278795.0	Mm.490638	NM_001111140	ENSMUSG00000090291	Lrrc10b	Gm705|SerdinR	leucine rich repeat containing 10B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81464509-3	chr10	81464394	81464594	+	953.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176954, intron 9 of 11)	CpG-1367	8637.0	NM_001311127	319586.0	Mm.152689	NM_176954	ENSMUSG00000034818	Celf5	4930565A21Rik|Brunol5	CUGBP, Elav-like family member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-142373480-2	chr7	142373404	142373604	+	559.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347541, intron 1 of 2)	intron (NM_001347541, intron 1 of 2)	242.0	NM_001347541	320802.0	Mm.154486	NM_177265	ENSMUSG00000045777	Ifitm10	6330512M04Rik|AI848576|DSPA3	interferon induced transmembrane protein 10	protein-coding	-0.906362300536043	-0.892978731959268	-0.900509104699852	-0.600432238574306	-0.905820237182489	-0.890311573250338	-0.899878267197585	-0.366731949294445	0.957313020712154	0.75873692759199	1
Merged-chr12-111035353-4	chr12	111035261	111035461	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4437.0	NM_198023	217864.0	Mm.23808	NM_198023	ENSMUSG00000037896	Rcor1	5730409O11|6720480E22Rik|AU042633|D12Wsu95e|Rocr1|mKIAA0071	REST corepressor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-66081183-4	chr5	66081063	66081263	+	898.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139065, intron 2 of 6)	intron (NM_139065, intron 2 of 6)	17016.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-107589978-4	chr1	107589891	107590091	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011459)	promoter-TSS (NM_011459)	-15.0	NM_011459	20725.0	Mm.83909	NM_011459	ENSMUSG00000026315	Serpinb8	CAP-2|CAP2|NK10|Spi8|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24804317-4	chr17	24804224	24804424	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029197)	promoter-TSS (NM_029197)	-58.0	NM_029197	75178.0	Mm.52592	NM_029197	ENSMUSG00000024155	Meiob	4930528F23Rik|MLZ-675	meiosis specific with OB domains	protein-coding	3.7005934940218	3.55396694797356	2.57366624299303	3.34429858994286	2.75894838458513	3.1006051544135	2.74353055280564	3.69096694103393	-0.370114845243451	0.556542061674833	0.960321604678676
Merged-chr6-55230653-2	chr6	55230553	55230753	+	669.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001142781, intron 5 of 17)	MIRc|SINE|MIR	27270.0	NM_001142781	330323.0	Mm.268997	NM_177883	ENSMUSG00000038022	Mindy4	C330043M08Rik|Fam188b|Gm1406	MINDY lysine 48 deubiquitinase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-84688511-4	chr18	84688420	84688620	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2818.0	NM_023149	66054.0	Mm.29646	NM_023149	ENSMUSG00000024644	Cndp2	0610010E05Rik|C76600|Cn2|Dip-2|Pep-1|Pep1	CNDP dipeptidase 2 (metallopeptidase M20 family)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10959755-4	chr19	10959634	10959834	+	723.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10468.0	NM_023731	108673.0	Mm.294908	NM_023731	ENSMUSG00000024732	Ccdc86	4933411H20Rik|6720480F16Rik|D19Ertd678e	coiled-coil domain containing 86	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-88824731-4	chr18	88824630	88824830	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	69477.0	NM_018821	54607.0	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-10451363-3	chr16	10451219	10451419	+	873.111145	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3957.0	NM_001013778	383103.0	Mm.325732	NM_001013778	ENSMUSG00000050908	Tvp23a	Fam18a	trans-golgi network vesicle protein 23A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5388737-4	chr19	5388609	5388809	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016882)	promoter-TSS (NM_016882)	-6.0	NM_016882	20227.0	Mm.34562	NM_016882	ENSMUSG00000039148	Sart1	U5-110K	squamous cell carcinoma antigen recognized by T cells 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-61133763-5	chr18	61133644	61133844	+	824.733337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134134, intron 20 of 20)	intron (NM_134134, intron 20 of 20)	16276.0	NR_105949	102466212.0		NR_105949	ENSMUSG00000098389	Mir6983	Gm27496|mmu-mir-6983	microRNA 6983	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-94982269-2	chr9	94982171	94982371	+	790.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_177909, intron 9 of 15)	intron (NM_177909, intron 9 of 15)	230442.0	NR_106116	102465763.0		NR_106116	ENSMUSG00000098251	Mir7656	Gm27614|mmu-mir-7656	microRNA 7656	ncRNA	2.48358911882366	1.00690069919732	0.98489337309373	1.90707236450169	1.71256537062042	1.94416685722277	1.23321543962665	1.3877389419566	-0.509950080994005	0.677396313168156	0.994818437932722
Merged-chr8-117065595-2	chr8	117065495	117065695	+	579.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_029686, exon 7 of 43)	exon (NM_029686, exon 7 of 43)	16854.0	NM_029686	76645.0	Mm.159753	NM_029686	ENSMUSG00000034416	Pkd1l2	1700126L06Rik	polycystic kidney disease 1 like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-64602104-6	chr17	64601914	64602114	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008549, intron 1 of 21)	CpG-6542	365.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-64031877-1	chr15	64031777	64031977	+	635.0	f0_balb.idr	intron (NM_001360037, intron 1 of 11)	intron (NM_001360037, intron 1 of 11)	27887.0	NM_001360038	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-34201463-2	chr14	34201363	34201563	+	854.75	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_183209, exon 1 of 2)	5' UTR (NM_183209, exon 1 of 2)	170.0	NM_183209	432839.0	Mm.294643	NM_183209	ENSMUSG00000071531	Gprin2	C130040D06Rik|C230073P13|Gm286|mKIAA0514	G protein regulated inducer of neurite outgrowth 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-187226254-2	chr1	187226154	187226354	+	672.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357646, intron 2 of 7)	(TCC)n|Simple_repeat|Simple_repeat	10511.0	NM_001357645	67769.0	Mm.138321	NM_026367	ENSMUSG00000039210	Gpatch2	5830433G22Rik|5830436K05Rik|AI427714|AI447508|AW107440|AW491060|Gpatc2	G patch domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-128171313-4	chr8	128171195	128171395	+	956.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	106930.0	NR_105822	102465212.0		NR_105822	ENSMUSG00000099326	Mir21c	Gm28013|mmu-mir-21c	microRNA 21c	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-135562731-3	chr2	135562632	135562832	+	835.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16A1|LTR|ERVL	20488.0	NR_015544	320684.0	Mm.421433	NR_015544	ENSMUSG00000085631	9630028H03Rik	-	RIKEN cDNA 9630028H03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-21776879-2	chr4	21776779	21776979	+	593.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_152825, intron 1 of 17)	intron (NM_152825, intron 1 of 17)	609.0	NM_152825	77593.0	Mm.154306	NM_152825	ENSMUSG00000040455	Usp45	3110003C05Rik|4930550B20Rik|AI843191|Gcap7	ubiquitin specific petidase 45	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-5261762-4	chr11	5261662	5261862	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_032396)	promoter-TSS (NM_032396)	-152.0	NM_032396	84035.0	Mm.209989	NM_032396	ENSMUSG00000020393	Kremen1	AV002070|Kremen|Krm1	kringle containing transmembrane protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52600480-4	chr13	52600379	52600579	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011518, intron 1 of 13)	intron (NM_011518, intron 1 of 13)	3597.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-82941802-4	chr8	82941674	82941874	+	963.125	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177378, intron 1 of 6)	L1MB2|LINE|L1	78418.0	NM_177378	330812.0	Mm.491438	NM_177378	ENSMUSG00000047747	Rnf150	A630007N06Rik|C030044C12Rik|Greul5|mKIAA1214	ring finger protein 150	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106329931-3	chr11	106329843	106330043	+	812.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133199, intron 14 of 23)	intron (NM_133199, intron 14 of 23)	-15381.0	NM_001313939	15985.0	Mm.2987	NM_008339	ENSMUSG00000040592	Cd79b	B29|Ig-beta|Igb|Igbeta	CD79B antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-89430890-4	chr15	89430786	89430986	+	852.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_004843)	promoter-TSS (NR_004843)	-959.0	NR_037153	12651.0	Mm.485045	NM_007692	ENSMUSG00000022617	Chkb	Chetk|Chkl|Ck|Ck/Ek|Ck/Ek-beta|Ckb|Ckekb|Ek	choline kinase beta	protein-coding	4.01025547837865	3.59077163130974	4.21762568282591	4.53213666336386	4.04194394859791	3.61807609958273	4.24856470224888	4.55283737210586	0.0366467298318354	0.935214999287892	0.998431161219273
Merged-chr9-72089123-4	chr9	72089024	72089224	+	916.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011544, intron 3 of 20)	L1MEc|LINE|L1	22077.0	NM_001253862	21406.0	Mm.171615	NM_011544	ENSMUSG00000032228	Tcf12	A130037E08Rik|ALF1|HEB|HEBAlt|HTF-4|HTF4|ME1|REB|bHLHb20	transcription factor 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-67892388-4	chr5	67892274	67892474	+	895.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44943.0	NM_001038999	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-139308772-1	chr4	139308672	139308872	+	546.0	f1_c57bl6.idr	intron (NM_145384, intron 1 of 8)	intron (NM_145384, intron 1 of 8)	1936.0	NR_151463	212555.0	Mm.45131	NM_145384	ENSMUSG00000028744	Pqlc2	BC019216	PQ loop repeat containing 2	protein-coding	-0.2851524221185	-0.827750607855898	-0.831825541964439	-0.83411565390867	-0.837343792916046	-0.825000640719502	-0.501455099585992	-0.833715914797171	-0.877941570444422	0.774544055847974	1
Merged-chr11-23634591-2	chr11	23634491	23634691	+	632.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347242)	promoter-TSS (NM_001347242)	-960.0	NM_027860	71675.0	Mm.48031	NM_027860	ENSMUSG00000042208	0610010F05Rik	Kiaa1841|mKIAA1841	RIKEN cDNA 0610010F05 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-25693445-2	chr14	25693345	25693545	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134084)	promoter-TSS (NM_134084)	-725.0	NM_134084	105675.0	Mm.41656	NM_134084	ENSMUSG00000021868	Ppif	AW457192|CyP-D|CyP-F|CypD|PPIase	peptidylprolyl isomerase F (cyclophilin F)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-72940346-2	chr17	72940246	72940446	+	733.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_029999, exon 3 of 3)	3' UTR (NM_029999, exon 3 of 3)	22041.0	NM_029999	77889.0	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-18470346-2	chr16	18470246	18470446	+	560.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001353143, intron 12 of 16)	intron (NM_001353143, intron 12 of 16)	-28367.0	NM_001081682	13972.0	Mm.236139	NM_023120	ENSMUSG00000000884	Gnb1l	ESTM55|Gm16314|Me49f07|Wdr14|Wdvcf	guanine nucleotide binding protein (G protein), beta polypeptide 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-38340310-2	chr18	38340210	38340410	+	904.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-1317.0	NM_011937	26384.0	Mm.22374	NM_011937	ENSMUSG00000052102	Gnpda1	GNPDA|Gnp1|Gnpi|oscillin	glucosamine-6-phosphate deaminase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-38117288-2	chr16	38117188	38117388	+	642.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347232, intron 1 of 11)	intron (NM_001347232, intron 1 of 11)	-28028.0	NR_033221	414072.0	Mm.483602	NR_033221		BC031361	-	cDNA sequence BC031361	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-95934607-2	chr5	95934507	95934707	+	789.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22332.0	NM_018866	55985.0	Mm.10116	NM_018866	ENSMUSG00000023078	Cxcl13	4631412M08Rik|ANGIE2|Angie|BCA-1|BLC|BLR1L|Scyb13	chemokine (C-X-C motif) ligand 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-34532782-4	chr10	34532679	34532879	+	959.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358769, intron 2 of 8)	MTD|LTR|ERVL-MaLR	49379.0	NM_010237	14302.0	Mm.332432	NM_010237	ENSMUSG00000019779	Frk	BSK|BSK/IYK|C85044|GTK|RAK	fyn-related kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180826901-6	chr1	180826815	180827015	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11B|LTR|ERVK	-13310.0	NM_008210	15078.0	Mm.138832	NM_008210	ENSMUSG00000060743	H3f3a	EyeLinc14|H3.3A	H3 histone, family 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115483971-2	chr11	115483871	115484071	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001361594)	TTS (NM_001361594)	-7558.0	NR_136931	102634812.0	Mm.390379	NR_136931		LOC102634812	-	ribosomal protein L39 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-72511366-2	chr5	72511266	72511466	+	575.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6826.0	NM_001122756	53419.0	Mm.332425	NM_016869	ENSMUSG00000005220	Corin	AV273130|Lrp4	corin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-74926920-5	chr15	74926909	74927109	+	986.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER31A|LTR|ERV1	-28042.0	NM_001164039	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	2.25838696954025	2.72852599205253	1.77616241424026	2.27850944210484	2.36684161633883	2.55634536807577	1.96295077468526	1.30440063475253	-0.3932115476348	0.676593051677294	0.99440487726309
Merged-chr11-101687943-4	chr11	101687830	101688030	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22389.0	NM_025404	80981.0	Mm.266840	NM_025404	ENSMUSG00000034936	Arl4d	1110036H21Rik|ARL6|AW456149|Arf4l|Arfl4|Arl5	ADP-ribosylation factor-like 4D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94599150-2	chr10	94599050	94599250	+	631.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12951.0	NR_106070	102466817.0		NR_106070	ENSMUSG00000098544	Mir7211	Gm27536|mmu-mir-7211	microRNA 7211	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-12380739-4	chr15	12380639	12380839	+	902.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081064, intron 18 of 23)	intron (NM_001081064, intron 18 of 23)	59243.0	NM_025673	66629.0	Mm.157655	NM_025673	ENSMUSG00000022200	Golph3	4733401N08Rik|5730410D03Rik|AW413496	golgi phosphoprotein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-43591841-2	chr17	43591741	43591941	+	829.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045444)	promoter-TSS (NR_045444)	-332.0	NR_045444	73504.0	Mm.9277	NR_045444	ENSMUSG00000090307	1700071M16Rik	-	RIKEN cDNA 1700071M16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-75273129-2	chr9	75273029	75273229	+	716.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081322, intron 18 of 40)	intron (NM_001081322, intron 18 of 40)	-33159.0	NM_010313	14697.0	Mm.17604	NM_010313	ENSMUSG00000032192	Gnb5	GBS|Gbeta5|flr	guanine nucleotide binding protein (G protein), beta 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81389564-4	chr10	81389482	81389682	+	990.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3235.0	NR_105878	102466763.0		NR_105878	ENSMUSG00000098811	Mir6913	Gm27788|mmu-mir-6913	microRNA 6913	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-62931109-2	chr14	62931009	62931209	+	569.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175546, intron 5 of 11)	intron (NM_175546, intron 5 of 11)	53401.0	NM_001037751	432867.0	Mm.99387	NM_001037751	ENSMUSG00000075574	Defb48	Defb42|EG432867	defensin beta 48	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-103703600-4	chr13	103703501	103703701	+	800.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_136924, intron 1 of 3)	intron (NR_136924, intron 1 of 3)	4032.0	NR_136924	102632492.0	Mm.383874	NR_136924	ENSMUSG00000114206	Gm30551	Gm30710	predicted gene, 30551	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-27685924-4	chr7	27685823	27686023	+	713.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198417, intron 1 of 5)	intron (NM_198417, intron 1 of 5)	-3417.0	NM_001112731	112415.0	Mm.145362	NM_198417	ENSMUSG00000057093	Zfp607b	C030039L03Rik	zinc finger protein 607B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85477471-4	chr12	85477350	85477550	+	964.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010234)	TTS (NM_010234)	3560.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-46302093-4	chr17	46301991	46302191	+	898.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286013, intron 5 of 5)	intron (NM_001286013, intron 5 of 5)	4163.0	NM_001286013	106565.0	Mm.23633	NM_134120	ENSMUSG00000047428	Dlk2	AI413481|DLK-2|Egfl9	delta like non-canonical Notch ligand 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-51489200-3	chr10	51489136	51489336	+	578.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-1662.0	NM_001291894	14728.0	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-108721816-3	chr6	108721719	108721919	+	778.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60885.0	NR_104577	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	1.40893376401126	0.915797031797828	1.5329857628616	1.36900533340061	1.60884675245746	1.47022201524656	1.54580801023392	0.893705778206451	0.318842805968114	0.805241791289774	0.998431161219273
Merged-chr2-26342070-2	chr2	26341970	26342170	+	822.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355575, intron 11 of 13)	intron (NM_001355575, intron 11 of 13)	10040.0	NM_026828	52838.0	Mm.31239	NM_026828	ENSMUSG00000075467	Dnlz	1110034G11Rik|D2Bwg1335e|HEP1	DNL-type zinc finger	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-73919293-2	chr13	73919193	73919393	+	620.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027182, intron 9 of 12)	intron (NM_027182, intron 9 of 12)	18474.0	NM_027182	69716.0	Mm.275095	NM_027182	ENSMUSG00000021569	Trip13	2410002G23Rik|D13Ertd328e	thyroid hormone receptor interactor 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-120741861-4	chr14	120741751	120741951	+	931.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-169343.0	NM_023579	70572.0	Mm.221452	NM_023579	ENSMUSG00000030662	Ipo5	1110011C18Rik|5730478E03Rik|AA409333|C76941|IMB3|Kpnb3|Ranbp5|imp5	importin 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-27446833-4	chr7	27446699	27446899	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_032610)	promoter-TSS (NM_032610)	-210.0	NM_032610	80297.0	Mm.459123	NM_032610	ENSMUSG00000011751	Sptbn4	1700022P15Rik|5830426A08Rik|ROSA62|SpbIV|Spnb4|dyn|lnd|nmf261|nmf379|qv	spectrin beta, non-erythrocytic 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-75197425-1	chr6	75197325	75197525	+	673.0	f1_balb.idr	Intergenic	RMER13A1|LTR|ERVK	-1726404.0	NR_108032	73408.0	Mm.233629	NR_108032	ENSMUSG00000107408	1700065L07Rik	-	RIKEN cDNA 1700065L07 gene	ncRNA	0.359222215020415	0.39801756825426	1.58831562906197	0.37584779433166	0.361729586540436	1.16524278073863	0.388374408207829	1.27344049197621	0.17721918195441	0.955868422305398	0.998431161219273
Merged-chr11-118513347-2	chr11	118513247	118513447	+	635.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001285436, exon 4 of 14)	exon (NM_001285436, exon 4 of 14)	36515.0	NM_001359368	217364.0	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-147133804-2	chr4	147133704	147133904	+	611.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42062.0	NM_001039209	195531.0	Mm.270762	NM_001039209	ENSMUSG00000078496	Zfp982	Gm13152	zinc finger protein 982	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-49757216-2	chr3	49757116	49757316	+	558.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_130448)	promoter-TSS (NM_130448)	100.0	NM_130448	73173.0	Mm.87246	NM_130448	ENSMUSG00000037892	Pcdh18	3110038E07Rik|BB095589|PCDH68L	protocadherin 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-13016743-4	chr10	13016645	13016845	+	822.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8295.0	NM_175102	66125.0	Mm.29743	NM_175102	ENSMUSG00000078348	Sf3b5	10kDa|1110005L13Rik|AU043053|Sf3b10	splicing factor 3b, subunit 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98052757-3	chr11	98052646	98052846	+	908.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146028, intron 1 of 10)	CpG	716.0	NM_146028	217154.0	Mm.181008	NM_146028	ENSMUSG00000017400	Stac2	24b2|24b2/STAC2|AW240854	SH3 and cysteine rich domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-90301956-2	chr16	90301856	90302056	+	597.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-17453.0	NM_178923	224432.0	Mm.439811	NM_178923	ENSMUSG00000022983	Scaf4	AA517739|Sfrs15|Sra4|Srsf15	SR-related CTD-associated factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-126104473-1	chr4	126104373	126104573	+	673.0	f0_balb.idr	intron (NM_028800, intron 1 of 10)	intron (NM_028800, intron 1 of 10)	516.0	NM_001145827	74178.0	Mm.440269	NM_028800	ENSMUSG00000042608	Stk40	2310004N11Rik|AI428792	serine/threonine kinase 40	protein-coding	0.958483500160431	1.75611900956653	1.55823883674619	1.64323678134898	1.44900376607153	2.00953056932262	1.00228551296662	1.96581923273164	0.516058319358878	0.672470275777917	0.99440487726309
Merged-chr1-52232438-4	chr1	52232345	52232545	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081081, intron 1 of 17)	CpG	787.0	NM_001081081	14660.0	Mm.398608	NM_001081081	ENSMUSG00000026103	Gls	6330442B14|AI314027|B230365M23Rik	glutaminase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-117566540-4	chr12	117566494	117566694	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175930, intron 3 of 27)	intron (NM_175930, intron 3 of 27)	50115.0	NM_175930	217944.0	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding	2.80744434850063	3.22888306665126	2.13008592661663	2.06835649153133	3.20861867613942	2.67353745391192	2.69742591102156	1.41845616167722	0.00575684098877197	0.994663094308571	0.998431161219273
Merged-chr12-75735096-1	chr12	75734996	75735196	+	932.0	f0_balb.idr	exon (NM_030750, exon 1 of 3)	exon (NM_030750, exon 1 of 3)	633.0	NM_030750	81535.0	Mm.280199	NM_030750	ENSMUSG00000021054	Sgpp1	AI463453|SPP|SPP1|Spph1	sphingosine-1-phosphate phosphatase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-75559581-4	chr9	75559437	75559637	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_016963, exon 1 of 10)	5' UTR (NM_016963, exon 1 of 10)	120.0	NM_016963	50875.0	Mm.38445	NM_016963	ENSMUSG00000058587	Tmod3	U-Tmod|UTMOD	tropomodulin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-21988427-3	chr14	21988321	21988521	+	883.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145459, intron 1 of 2)	CpG-4314	1180.0	NM_145459	218820.0	Mm.292401	NM_145459	ENSMUSG00000039081	Zfp503	AI181838|B830002A16Rik|Nolz-1|Nolz1|Znf503	zinc finger protein 503	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-11812058-2	chr19	11811958	11812158	+	592.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_011502, intron 1 of 10)	intron (NM_011502, intron 1 of 10)	7345.0	NM_001286543	20908.0	Mm.272264	NM_011502	ENSMUSG00000041488	Stx3	Syn-3	syntaxin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-134077856-4	chr1	134077740	134077940	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007570, intron 1 of 1)	intron (NM_007570, intron 1 of 1)	1315.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167368623-4	chr2	167368508	167368708	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19430.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-77331097-3	chr1	77331018	77331218	+	785.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	165650.0	NR_105770	102465180.0		NR_105770	ENSMUSG00000099141	Mir6352	Gm27481|mmu-mir-6352	microRNA 6352	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-48459098-4	chr14	48458992	48459192	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310584, intron 4 of 16)	intron (NM_001310584, intron 4 of 16)	12740.0	NR_132324	218989.0	Mm.85211	NM_172600	ENSMUSG00000036339	Tmem260	5930435P15|6720456H20Rik	transmembrane protein 260	protein-coding	4.68208963759555	5.53031110075639	3.20826069011071	4.67605210399472	5.13466833919012	4.79972087630683	4.83384435344636	4.89413513929905	0.217709421796675	0.614124942153808	0.977250439470701
Merged-chr3-21988789-2	chr3	21988689	21988889	+	745.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-87863.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89322983-4	chr3	89322880	89323080	+	841.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010108)	promoter-TSS (NM_010108)	-101.0	NM_010108	13638.0	Mm.331159	NM_010108	ENSMUSG00000028039	Efna3	AW494418|EFL-2|Ehk1-L|Epl3|LERK-3	ephrin A3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-101956627-2	chr12	101956527	101956727	+	846.7333369999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_029705, intron 1 of 10)	RMER10A|LTR|ERVL	1616.0	NM_029705	110616.0	Mm.271914	NM_029705	ENSMUSG00000021189	Atxn3	2210008M02Rik|AI463012|AI647473|ATX3|MJD1|Mjd|Sca3|ataxin-3	ataxin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-6415420-4	chr4	6415298	6415498	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010945, intron 21 of 30)	intron (NM_010945, intron 21 of 30)	38873.0	NM_010945	18201.0	Mm.3059	NM_010945	ENSMUSG00000028245	Nsmaf	AA959567|C630007J05|Fan	neutral sphingomyelinase (N-SMase) activation associated factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-3668504-2	chr8	3668404	3668604	+	567.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_026985, exon 7 of 7)	3' UTR (NM_026985, exon 7 of 7)	2742.0	NM_026985	69189.0	Mm.175176	NM_026985	ENSMUSG00000013974	Mcemp1	1810033B17Rik	mast cell expressed membrane protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-8846375-3	chr10	8846251	8846451	+	822.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 2 of 19)	intron (NM_175155, intron 2 of 19)	39719.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-102298165-2	chr11	102298065	102298265	+	780.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur2|SINE|Alu	-1536.0	NM_001098837	217218.0	Mm.390381	NM_001098836	ENSMUSG00000059995	Atxn7l3	E030022H21Rik	ataxin 7-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-57250548-2	chr17	57250448	57250648	+	808.900024	f1_balb.idr|f1_c57bl6.idr	intron (NM_001242390, intron 1 of 14)	intron (NM_001242390, intron 1 of 14)	1097.0	NM_001242389	106628.0	Mm.37368	NM_134125	ENSMUSG00000019487	Trip10	AI646975|Cip4	thyroid hormone receptor interactor 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127479418-3	chr10	127479298	127479498	+	713.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359246, intron 13 of 23)	B3|SINE|B2	-22288.0	NM_001359751	237611.0	Mm.32087	NM_177707	ENSMUSG00000040287	Stac3	9830125E18	SH3 and cysteine rich domain 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27312720-2	chr2	27312620	27312820	+	595.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_133905, intron 3 of 29)	intron (NR_133905, intron 3 of 29)	-65417.0	NM_138665	192166.0	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-69186189-2	chr16	69186089	69186289	+	618.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17B|LTR|ERVK	614192.0	NR_130991	78110.0	Mm.211406	NR_130991	ENSMUSG00000107073	4930428D20Rik	Gm43265	RIKEN cDNA 4930428D20 gene	ncRNA	-0.865326703316383	-0.849971874135937	0.280665258210813	-0.858864759381203	-0.86435674098481	-0.848731039658829	-0.853951331253819	-0.858192605091486	-3.66751939073779	0.204629335831286	1
Merged-chr13-23424706-4	chr13	23424626	23424826	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013924)	promoter-TSS (NM_013924)	-860.0	NM_013924	30946.0	Mm.292094	NM_013924	ENSMUSG00000036376	Abt1	-	activator of basal transcription 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-12172301-3	chr12	12172202	12172402	+	938.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-89837.0	NM_029758	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	3.92544265565852	4.59154071123062	3.10377043922304	1.52572626198248	4.16602160664153	4.14243773613522	3.24076850885911	1.53693796651247	-0.129177222946003	0.932418219359824	0.998431161219273
Merged-chr10-94904804-4	chr10	94904699	94904899	+	894.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018797, intron 4 of 30)	intron (NM_018797, intron 4 of 30)	39779.0	NM_018797	54712.0	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-89174056-4	chr15	89173948	89174148	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159521)	promoter-TSS (NM_001159521)	-97.0	NM_001159521	140570.0	Mm.267514	NM_138749	ENSMUSG00000036606	Plxnb2	Debt|plexin-B2	plexin B2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-23546493-4	chr17	23546358	23546558	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4341.0	NR_126485	320020.0	Mm.445111	NR_126484		6330415G19Rik	-	RIKEN cDNA 6330415G19 gene	ncRNA	3.596886355863	4.18359540949777	2.97558275092536	4.59142618821785	4.24577949160581	4.51399988484803	4.37497572180697	4.76152892001642	0.680331120850541	0.144788387775636	0.594614499622435
Merged-chr5-31709604-2	chr5	31709504	31709704	+	839.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_181281, intron 2 of 10)	B3|SINE|B2	11554.0	NM_144541	107976.0	Mm.482126	NM_144541	ENSMUSG00000052139	Babam2	6030405P19Rik|AI429776|B830038C02Rik|Bre	BRISC and BRCA1 A complex member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124812448-2	chr6	124812348	124812548	+	930.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_009415, exon 4 of 7)	exon (NM_009415, exon 4 of 7)	1848.0	NM_009415	21991.0	Mm.4222	NM_009415	ENSMUSG00000023456	Tpi1	AI255506|TIM|Tpi|Tpi-1	triosephosphate isomerase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165936151-2	chr2	165936051	165936251	+	713.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51313.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	-1.84362945061595	-1.81329140012928	-1.67810947190254	-1.83000206547234	-1.84149977556685	-1.81130325271815	-1.67603257143677	-1.82865309133977	0.037684011990387	0.991491645451152	1
Merged-chr9-41951249-4	chr9	41951168	41951368	+	984.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	125945.0	NM_001357261	20660.0	Mm.121920	NM_011436	ENSMUSG00000049313	Sorl1	2900010L19Rik|AI596264|AW261561|LR11|SorLA|gp250|mSorLA	sortilin-related receptor, LDLR class A repeats-containing	protein-coding	0.41094766689238	0.256853582168402	0.245629507717383	0.236798825128347	0.416879294376499	0.259350694919491	1.08740144729634	1.60261543979554	3.90371564445588	0.0339028275755624	0.25941717171658
Merged-chr2-181675648-4	chr2	181675552	181675752	+	897.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4012.0	NM_009236	20672.0	Mm.264904	NM_009236	ENSMUSG00000046470	Sox18	AI385749|Ra|Ragl	SRY (sex determining region Y)-box 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-31216749-4	chr6	31216654	31216854	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110469, intron 1 of 3)	CpG	1720.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80008712-2	chr7	80008612	80008812	+	544.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-16102.0	NM_001145999	209225.0	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64327395-3	chr5	64327271	64327471	+	631.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 14 of 18)	intron (NM_001289514, intron 14 of 18)	97014.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84910968-2	chr8	84910868	84911068	+	936.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_019945)	TTS (NM_019945)	2344.0	NM_010062	13423.0	Mm.350831	NM_010062	ENSMUSG00000003812	Dnase2a	Dnase2	deoxyribonuclease II alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-134091239-2	chr1	134091139	134091339	+	969.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12084.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-33997720-2	chr17	33997554	33997754	+	780.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001892, intron 3 of 7)	intron (NM_001001892, intron 3 of 7)	2679.0	NM_001001892	14972.0	Mm.422886	NM_001001892	ENSMUSG00000061232	H2-K1	H-2K|H-2K(d)|H2-K|K-f	histocompatibility 2, K1, K region	protein-coding	2.76488770176771	1.31295162569038	2.77743962505743	3.15741725726513	1.80933074684118	1.32119790073684	1.97024859799565	2.43267498135266	-1.55570200726347	0.110551646872709	0.520793640554224
Merged-chr3-60618002-3	chr3	60617874	60618074	+	761.033325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253711, intron 6 of 7)	MIRb|SINE|MIR	116795.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-19985868-2	chr14	19985768	19985968	+	956.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8619.0	NM_001285909	14702.0	Mm.41737	NM_010315	ENSMUSG00000043004	Gng2	-	guanine nucleotide binding protein (G protein), gamma 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-58502732-1	chr16	58502632	58502832	+	572.5	f0_c57.idr	intron (NM_001357433, intron 2 of 10)	B1F|SINE|Alu	20694.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53068710-2	chr4	53068610	53068810	+	677.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_013454, exon 28 of 50)	exon (NM_013454, exon 28 of 50)	56830.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81567667-2	chr10	81567567	81567767	+	729.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7620.0	NM_019725	21886.0	Mm.38608	NM_019725	ENSMUSG00000034771	Tle2	Grg2|mKIAA4188	transducin-like enhancer of split 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89217756-2	chr3	89217656	89217856	+	816.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_013691, exon 3 of 23)	exon (NM_013691, exon 3 of 23)	1168.0	NR_149740	21827.0	Mm.2114	NM_013691	ENSMUSG00000028047	Thbs3	TSP3|Thbs-3	thrombospondin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-99169982-4	chr10	99169886	99170086	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153333, intron 11 of 12)	intron (NR_153333, intron 11 of 12)	61851.0	NM_015737	14426.0	Mm.314	NM_015737	ENSMUSG00000090035	Galnt4	AV011803	polypeptide N-acetylgalactosaminyltransferase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-110683454-2	chr12	110683354	110683554	+	818.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025488)	promoter-TSS (NM_025488)	-835.0	NM_025488	66323.0	Mm.273316	NM_025488	ENSMUSG00000056508	1700001K19Rik	-	RIKEN cDNA 1700001K19 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-28319813-4	chr6	28319704	28319904	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58203.0	NM_001081678	627049.0	Mm.84441	NM_001081678	ENSMUSG00000039841	Zfp800	AA407452|Znf800	zinc finger protein 800	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-8807349-3	chr5	8807240	8807440	+	968.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011075, intron 4 of 27)	intron (NM_011075, intron 4 of 27)	-8817.0	NR_152132	330031.0	Mm.389059	NR_152132		Gm5106	A230021K14|EG330031	predicted gene 5106	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-11970552-3	chr19	11970455	11970655	+	912.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033174, intron 1 of 13)	intron (NM_001033174, intron 1 of 13)	4711.0	NM_001033174	76303.0	Mm.291279	NM_001033174	ENSMUSG00000024687	Osbp	1110018F06Rik|AW559088|mKIAA4220	oxysterol binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-6152950-4	chr7	6152862	6153062	+	806.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013012, intron 1 of 2)	intron (NM_001013012, intron 1 of 2)	3009.0	NM_001013012	67109.0	Mm.3254	NM_001013012	ENSMUSG00000046792	Zfp787	2210018M03Rik|Znf787	zinc finger protein 787	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-36064729-4	chr3	36064616	36064816	+	984.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14|LTR|ERV1	-1263.0	NM_172678	229211.0	Mm.260997	NM_172678	ENSMUSG00000027710	Acad9	2600017P15Rik|4732402K02|C630012L17Rik|NPD002	acyl-Coenzyme A dehydrogenase family, member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-41476424-4	chr10	41476315	41476515	+	971.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001164433, exon 1 of 23)	5' UTR (NM_001164433, exon 1 of 23)	101.0	NM_138315	171580.0	Mm.290431	NM_138315	ENSMUSG00000019823	Mical1	MICAL|MICAL-1|Nical	microtubule associated monooxygenase, calponin and LIM domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-136703076-4	chr3	136702977	136703177	+	964.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008913, intron 1 of 13)	intron (NM_008913, intron 1 of 13)	33011.0	NM_001293622	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72037742-4	chr6	72037612	72037812	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_046180, intron 1 of 2)	intron (NR_046180, intron 1 of 2)	4816.0	NR_046180	330350.0	Mm.246787	NR_046180	ENSMUSG00000108356	9130221F21Rik	9130221F21	RIKEN cDNA 9130221F21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-121292057-4	chr3	121291944	121292144	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155539, intron 1 of 2)	CpG	304.0	NM_024178	66789.0	Mm.269881	NM_024178	ENSMUSG00000039887	Alg14	5430428G01Rik|AI854024	asparagine-linked glycosylation 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-143975452-4	chr2	143975378	143975578	+	964.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024281, intron 2 of 23)	intron (NM_024281, intron 2 of 23)	35785.0	NM_133626	81910.0	Mm.13705	NM_024281	ENSMUSG00000027422	Rrbp1	1700087N07Rik|5730465C04Rik|ES/130|mKIAA1398|mRRp0|mRRp1.8|mRRp10|mRRp15a|mRRp15b|mRRp16.8|mRRp2|mRRp41|mRRp47|mRRp5.4|p180	ribosome binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-150845871-3	chr2	150845742	150845942	+	847.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151505, intron 4 of 12)	intron (NR_151505, intron 4 of 12)	-3272.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-16551743-2	chr3	16551643	16551843	+	965.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	-265351.0	NR_153388	102632048.0	Mm.417635	NR_153388		Gm30223	-	predicted gene, 30223	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-131290630-4	chr6	131290533	131290733	+	888.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025564, intron 1 of 4)	B2_Mm2|SINE|B2	2611.0	NM_001327860	66441.0	Mm.46623	NM_025564	ENSMUSG00000030188	Magohb	2010012C16Rik|Mago|Magoh|Magoh-rs1	mago homolog B, exon junction complex core component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-98958003-4	chr9	98957904	98958104	+	740.670837	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_012020, exon 1 of 1)	3' UTR (NM_012020, exon 1 of 1)	2397.0	NM_012020	26927.0	Mm.151239	NM_012020	ENSMUSG00000050397	Foxl2	AU045128|BPES|PINTO|Pfrk	forkhead box L2	protein-coding	-0.117249250703032	0.728634505514341	-0.102032660168839	0.886266927098409	-0.115819104157918	-0.0931354142200778	-0.100421278499575	-0.106710085304548	-4.1838000131386	0.0683331794662825	1
Merged-chr7-16326400-4	chr7	16326301	16326501	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_019748)	TTS (NM_019748)	16818.0	NM_133234	170770.0	Mm.7660	NM_133234	ENSMUSG00000002083	Bbc3	PUMA|PUMA/JFY1	BCL2 binding component 3	protein-coding	3.52204330573684	5.17620585161109	5.25191685118844	4.3882878773759	4.56181576545405	4.25540331118592	5.34511934446062	4.92188853905118	0.117286375682638	0.789622404862907	0.998431161219273
Merged-chr4-151996622-1	chr4	151996522	151996722	+	1000.0	f0_c57.idr	promoter-TSS (NM_172705)	promoter-TSS (NM_172705)	-443.0	NM_172705	230936.0	Mm.25582	NM_172705	ENSMUSG00000047777	Phf13	BC029632|Phf5|SPOC1	PHD finger protein 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-148561282-4	chr6	148561177	148561377	+	997.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53032.0	NR_045867	622319.0	Mm.491049	NM_001037912	ENSMUSG00000070995	Gm6313	EG622319	predicted gene 6313	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-51044059-3	chr17	51043956	51044156	+	921.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028162, intron 2 of 21)	intron (NM_028162, intron 2 of 21)	115322.0	NM_001285993	72238.0	Mm.120650	NM_028162	ENSMUSG00000023923	Tbc1d5	1600014N05Rik	TBC1 domain family, member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-97517423-2	chr15	97517323	97517523	+	859.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	188399.0	NM_028003	71919.0	Mm.12255	NM_028003	ENSMUSG00000022466	Rpap3	2310042P20Rik|D15Ertd682e	RNA polymerase II associated protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-5697437-4	chr2	5697343	5697543	+	896.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290374, intron 1 of 9)	intron (NM_001290374, intron 1 of 9)	17319.0	NM_001290374	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-43132918-1	chr17	43132818	43133018	+	582.0	f1_balb.idr	Intergenic	RMER2|LTR|ERV1	25373.0	NR_045155	545207.0	Mm.329050	NR_045153		E130008D07Rik	-	RIKEN cDNA E130008D07 gene	ncRNA	-0.0138918678461606	0.505481137032092	-0.00212587269790204	0.634831453769554	-0.0127973512103033	0.515151372651312	-0.000864398164377195	-0.00577084780260773	-1.23172393368347	0.584467527327763	1
Merged-chr1-135787975-2	chr1	135787875	135788075	+	953.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11446.0	NM_021467	21952.0	Mm.44379	NM_021467	ENSMUSG00000026418	Tnni1	2700018B22Rik|AI747285|ssTnI	troponin I, skeletal, slow 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-66955418-2	chr6	66955318	66955518	+	601.099976	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177560, intron 3 of 4)	intron (NM_001177560, intron 3 of 4)	58527.0	NM_001177558	14701.0	Mm.234342	NM_025278	ENSMUSG00000036402	Gng12	2010305F15Rik|AA536815|AI115529|AI314170|AI842738	guanine nucleotide binding protein (G protein), gamma 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-155628513-2	chr2	155628365	155628565	+	739.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085378, intron 25 of 41)	intron (NM_001085378, intron 25 of 41)	5585.0	NR_030757	735275.0		NR_030757	ENSMUSG00000076312	Mir499	Mirn499|mir-499|mmu-mir-499	microRNA 499	ncRNA	-1.8418762459921	-1.8125357239735	-1.82140854000656	-1.82869693527674	-1.56059678980999	-1.8106129477253	-1.81939992894326	-1.82739231600805	1.3620893379502	0.699511506488145	1
Merged-chr13-98890484-4	chr13	98890360	98890560	+	835.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178716, intron 2 of 23)	intron (NM_178716, intron 2 of 23)	582.0	NM_001048267	238799.0	Mm.173286	NM_178716	ENSMUSG00000009470	Tnpo1	AU021749|D13Ertd688e|IPO2|Kpnb2|MIP|MIP1|TRN	transportin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-111526785-4	chr8	111526672	111526872	+	994.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4665.0	NM_176923	319481.0	Mm.247294	NM_176923	ENSMUSG00000031959	Wdr59	5430401O09Rik|Cdw12	WD repeat domain 59	protein-coding	4.78416656308951	3.53445350218481	5.3300675530796	4.94347153638815	3.80848120766583	3.8736828614832	4.96324070681071	4.00525136438277	-0.684049368725175	0.144432694574208	0.59400256038666
Merged-chr5-130144747-4	chr5	130144619	130144819	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172509)	promoter-TSS (NM_172509)	-169.0	NM_172509	212919.0	Mm.55812	NM_172509	ENSMUSG00000034110	Kctd7	4932409E18|9430010P06Rik	potassium channel tetramerisation domain containing 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-78352075-1	chr11	78351975	78352175	+	548.0	f1_balb.idr	Intergenic	MTC|LTR|ERVL-MaLR	5365.0	NM_001313987	22248.0	Mm.284811	NM_011676	ENSMUSG00000002058	Unc119	D11Bhm52|HRG4|MRG4|Rg4|Rtg4|Unc119h	unc-119 lipid binding chaperone	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81525741-2	chr15	81525641	81525841	+	691.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	59425.0	NM_019712	56438.0	Mm.29405	NM_019712	ENSMUSG00000022400	Rbx1	1500002P15Rik|AA517855|ROC1	ring-box 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-18999567-2	chr10	18999467	18999667	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12396.0	NM_001166402	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-66701288-2	chr1	66701188	66701388	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025683, intron 1 of 5)	CpG	457.0	NM_001310644	66646.0	Mm.240912	NM_025683	ENSMUSG00000026005	Rpe	2810429B02Rik|5730518J08Rik	ribulose-5-phosphate-3-epimerase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55746641-5	chr14	55746541	55746741	+	857.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026819)	promoter-TSS (NM_026819)	948.0	NM_026403	67842.0	Mm.180338	NM_026403	ENSMUSG00000019297	Nop9	2610027L16Rik	NOP9 nucleolar protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-3745396-2	chr16	3745296	3745496	+	987.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_148924, intron 1 of 5)	intron (NM_148924, intron 1 of 5)	1297.0	NM_148924	74120.0	Mm.29081	NM_148924	ENSMUSG00000022529	Zfp263	1200014J04Rik|AI326880|AU020888|NT2|mFPM315	zinc finger protein 263	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52618758-4	chr13	52618662	52618862	+	844.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011518, intron 3 of 13)	intron (NM_011518, intron 3 of 13)	21880.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-17449872-1	chr16	17449772	17449972	+	544.0	f1_balb.idr	Intergenic	B4|SINE|B4	-2113.0	NM_001277231	12929.0	Mm.21048	NM_007764	ENSMUSG00000006134	Crkl	1110025F07Rik|AA589403|AI325100|Crkol	v-crk avian sarcoma virus CT10 oncogene homolog-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-38461877-2	chr16	38461777	38461977	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359898, intron 1 of 5)	L1MC1|LINE|L1	2944.0	NM_009855	12519.0	Mm.89474	NM_009855	ENSMUSG00000075122	Cd80	B71|Cd28l|Ly-53|Ly53|MIC17|TSA1	CD80 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-84790824-4	chr17	84790684	84790884	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028233)	promoter-TSS (NM_028233)	2.0	NM_028233	72416.0	Mm.217027	NM_028233	ENSMUSG00000024120	Lrpprc	3110001K13Rik|C76645|Gp130|Lrp130|Lsfc	leucine-rich PPR-motif containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-160084934-4	chr2	160084847	160085047	+	956.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	68294.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	4.59873953669948	5.01727901186834	4.4675298727531	4.62627533818442	4.31119953866854	5.44693605837766	4.14330383793589	3.07831292933246	-0.244642861944929	0.608312702437173	0.974576632476413
Merged-chr9-94671649-2	chr9	94671549	94671749	+	624.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177909, intron 1 of 15)	intron (NM_177909, intron 1 of 15)	1757.0	NM_177909	331004.0	Mm.326125	NM_177909	ENSMUSG00000031129	Slc9a9	5730527A11Rik|9930105B05|AI854429|Nhe9	solute carrier family 9 (sodium/hydrogen exchanger), member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-29442638-4	chr19	29442533	29442733	+	925.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021396, intron 3 of 5)	intron (NM_021396, intron 3 of 5)	31714.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-34052513-3	chr11	34052495	34052695	+	701.714294	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010696, intron 2 of 20)	intron (NM_010696, intron 2 of 20)	5667.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-42265619-4	chr6	42265508	42265708	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007610, intron 1 of 10)	intron (NM_007610, intron 1 of 10)	623.0	NM_007610	12366.0	Mm.3921	NM_007610	ENSMUSG00000029863	Casp2	CASP-2|ICH-1|NEDD-2|Nedd2	caspase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-112631658-4	chr12	112631531	112631731	+	957.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007421, intron 2 of 12)	intron (NM_007421, intron 2 of 12)	11584.0	NM_007421	11565.0	Mm.3440	NM_007421	ENSMUSG00000011148	Adssl1	AI528595|Adss|Adss1	adenylosuccinate synthetase like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-46545932-2	chr17	46545832	46546032	+	986.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_020493)	TTS (NM_020493)	456.0	NM_001081335	78309.0	Mm.329076	NM_001081335	ENSMUSG00000040327	Cul9	1810035I07Rik|Cul-9|Parc|mKIAA0708	cullin 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124857153-4	chr6	124857064	124857264	+	979.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013534, intron 1 of 14)	CpG	523.0	NM_013534	14789.0	Mm.35708	NM_013534	ENSMUSG00000023191	P3h3	BC016431|Grcb|Leprel2	prolyl 3-hydroxylase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-36602857-3	chr16	36602759	36602959	+	742.75	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40725.0	NM_013803	12374.0	Mm.103619	NM_013803	ENSMUSG00000051980	Casr	CaR|Gprc2a	calcium-sensing receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84900901-2	chr8	84900801	84901001	+	645.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1027.0	NM_010635	16596.0	Mm.4847	NM_010635	ENSMUSG00000054191	Klf1	Eklf|Nan	Kruppel-like factor 1 (erythroid)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-67048747-2	chr9	67048647	67048847	+	797.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164249, intron 1 of 8)	CpG-15124	466.0	NM_001164255	22003.0	Mm.121878	NM_024427	ENSMUSG00000032366	Tpm1	AA986836|AI854628|TM2|TPM1kappa|Tm3|Tmpa|Tpm-1|alpha-TM	tropomyosin 1, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-154090026-3	chr1	154089928	154090128	+	804.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER20|DNA|hAT-Charlie	-111159.0	NM_001204908	100503355.0	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	Gm10178|Gm203	zinc finger protein 648	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78623617-4	chr15	78623513	78623713	+	813.608337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26566.0	NM_028195	72318.0	Mm.32911	NM_028195	ENSMUSG00000018008	Cyth4	2510004M07Rik|5830469K17Rik|AI467541|Pscd4|mFLJ00017	cytohesin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-30615354-2	chr14	30615254	30615454	+	578.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011103, intron 1 of 17)	intron (NM_011103, intron 1 of 17)	-5044.0	NM_001310682	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-58343346-3	chr15	58343242	58343442	+	890.022217	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027211, intron 8 of 8)	intron (NM_027211, intron 8 of 8)	-19173.0	NM_177755	268807.0	Mm.124498	NM_177755	ENSMUSG00000022357	Klhl38	8230402K04Rik	kelch-like 38	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-113820269-4	chr2	113820199	113820399	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009162, intron 2 of 5)	intron (NM_009162, intron 2 of 5)	8792.0	NM_009162	20394.0	Mm.4836	NM_009162	ENSMUSG00000023236	Scg5	7B2|AI325031|Sgne-1|Sgne1	secretogranin V	protein-coding	2.41878595372248	3.7310860591837	3.46807842784284	2.41459881461647	3.99002626799589	1.96516727588106	2.5146248620442	3.81749637400286	0.321581414081694	0.667937957235423	0.993132800426794
Merged-chr11-69063011-4	chr11	69062799	69062999	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3124.0	NM_028005	71923.0	Mm.340257	NM_028005	ENSMUSG00000045176	Borcs6	2310047M10Rik	BLOC-1 related complex subunit 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-75060438-4	chr10	75060363	75060563	+	986.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081412)	promoter-TSS (NM_001081412)	-433.0	NM_001081412	110279.0	Mm.333722	NM_001081412	ENSMUSG00000009681	Bcr	5133400C09Rik|AI561783|AI853148|mKIAA3017	breakpoint cluster region	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35873880-4	chr17	35873663	35873863	+	888.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175242, exon 2 of 3)	exon (NM_175242, exon 2 of 3)	-6015.0	NM_026987	69192.0	Mm.390986	NM_026987	ENSMUSG00000024422	Dhx16	2410006N22Rik|DBP2|Ddx16|mKIAA0577	DEAH (Asp-Glu-Ala-His) box polypeptide 16	protein-coding	-2.18308165884198	-2.15547475440471	-2.16382331017202	-2.1706810624505	-2.18114370519566	-2.15366558754311	-2.03057248461154	-2.16945352807143	0.759018020146679	0.829933115115583	1
Merged-chr2-128389287-3	chr2	128389148	128389348	+	837.694458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028591, intron 1 of 1)	intron (NR_028591, intron 1 of 1)	40103.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-42829719-4	chr13	42829615	42829815	+	770.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005740, intron 1 of 12)	intron (NM_001005740, intron 1 of 12)	-36532.0	NM_001302636	218194.0	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-21288741-1	chr12	21288641	21288841	+	582.0	f1_c57bl6.idr	intron (NM_018813, intron 1 of 17)	intron (NM_018813, intron 1 of 17)	2444.0	NM_018813	54451.0	Mm.356778	NM_018813	ENSMUSG00000054309	Cpsf3	-	cleavage and polyadenylation specificity factor 3	protein-coding	1.90626022926962	2.31227160970446	2.2319185505591	3.60313392910491	2.20000788775483	2.60753358397602	2.08830178144874	2.31578573740502	-0.821279846272352	0.330061837047074	0.83197671091297
Merged-chr17-81572984-3	chr17	81572887	81573087	+	948.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 2 of 8)	RMER19B2|LTR|ERVK	165400.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-8944083-4	chr5	8943967	8944167	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008830, intron 21 of 27)	MIR|SINE|MIR	50346.0	NM_008830	18670.0	Mm.297825	NM_008830	ENSMUSG00000042476	Abcb4	Mdr2|Pgy-2|Pgy2|mdr-2	ATP-binding cassette, sub-family B (MDR/TAP), member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-3385189-2	chr18	3385089	3385289	+	656.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029402, intron 1 of 20)	B1_Mus2|SINE|Alu	1964.0	NM_029402	71745.0	Mm.291707	NM_029402	ENSMUSG00000024231	Cul2	1300003D18Rik|4932411N15Rik|AI327301|mKIAA4106	cullin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166261989-4	chr2	166261860	166262060	+	941.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11948.0	NR_033467	670775.0	Mm.384326	NR_033467	ENSMUSG00000084840	Gm11468	-	predicted gene 11468	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-116631207-1	chr14	116631107	116631307	+	626.0	f1_balb.idr	Intergenic	Intergenic	-294090.0	NM_001079844	23888.0	Mm.440025	NM_011821	ENSMUSG00000058571	Gpc6	-	glypican 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-16870781-4	chr16	16870651	16870851	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011624)	promoter-TSS (NM_011624)	15.0	NM_011624	21976.0	Mm.326089	NM_011624	ENSMUSG00000022779	Top3b	-	topoisomerase (DNA) III beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-44176553-3	chr12	44176467	44176667	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33501.0	NM_013760	27362.0	Mm.27432	NM_013760	ENSMUSG00000014905	Dnajb9	AA408011|AA673251|AA673481|AW556981|ERdj4|Mdg1|mDj7	DnaJ heat shock protein family (Hsp40) member B9	protein-coding	2.38216505526246	2.05636437303202	2.4213183161035	1.63793450078736	1.57545018642369	1.92035957256995	2.34684398577548	1.4586425906148	-0.759597424571698	0.433277421568628	0.905745034524566
Merged-chr11-114205410-3	chr11	114205310	114205510	+	839.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7152.0	NR_045930	73536.0	Mm.54275	NR_045930	ENSMUSG00000078600	1700092K14Rik	-	RIKEN cDNA 1700092K14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-21129753-2	chr18	21129653	21129853	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001033445, exon 6 of 6)	exon (NM_001033445, exon 6 of 6)	57409.0	NM_008586	17288.0	Mm.2682	NM_008586	ENSMUSG00000024313	Mep1b	Mep-1b	meprin 1 beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-28676207-4	chr12	28676154	28676354	+	693.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134052, intron 1 of 3)	intron (NM_134052, intron 1 of 3)	1047.0	NM_134052	104923.0	Mm.291504	NM_134052	ENSMUSG00000020629	Adi1	AL024210|Fe-ARD|MTCBP-1|Ni-ARD	acireductone dioxygenase 1	protein-coding	2.52650502627323	3.53904710411783	3.02105473003591	3.48081317921543	3.46687768100005	3.376683147261	2.7841194864734	4.46355775116663	0.743772745809688	0.234409265834432	0.730757588294174
Merged-chr16-55837984-2	chr16	55837884	55838084	+	685.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159395, intron 1 of 12)	B1_Mus2|SINE|Alu	657.0	NM_030612	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-21420905-2	chr5	21420805	21421005	+	832.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_029195, intron 1 of 18)	intron (NM_029195, intron 1 of 18)	3772.0	NM_029195	75172.0	Mm.426695	NM_029195	ENSMUSG00000064280	Ccdc146	4930528G09Rik|mKIAA1505	coiled-coil domain containing 146	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-19258258-2	chr19	19258158	19258358	+	807.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	-147062.0	NM_001043354	225998.0	Mm.234641	NM_146095	ENSMUSG00000036192	Rorb	Nr1f2|RZR-beta|RZRB|Rorbeta|hstp	RAR-related orphan receptor beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-30073549-3	chr5	30073443	30073643	+	926.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033402)	promoter-TSS (NR_033402)	82.0	NR_033402	22171.0	Mm.268395	NM_021288	ENSMUSG00000025747	Tyms	Ts	thymidylate synthase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83326138-4	chr6	83326101	83326301	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_145571, exon 1 of 6)	5' UTR (NM_145571, exon 1 of 6)	162.0	NM_145571	232157.0	Mm.29500	NM_145571	ENSMUSG00000043131	Mob1a	4022402H07Rik|MOB1|MOB4B|Mobk1b|Mobkl1b	MOB kinase activator 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-108572898-2	chr3	108572778	108572978	+	639.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_025444, intron 1 of 3)	intron (NM_025444, intron 1 of 3)	1179.0	NM_025444	99730.0	Mm.24431	NM_025444	ENSMUSG00000048100	Taf13	1810004N01Rik|2010309N11Rik|AI847295|TAFII18	TATA-box binding protein associated factor 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56883197-2	chr17	56883097	56883297	+	614.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030141, intron 8 of 13)	intron (NM_030141, intron 8 of 13)	7564.0	NM_030141	78625.0	Mm.160106	NM_030141	ENSMUSG00000024209	1700061G19Rik	1700026H02|AI507598	RIKEN cDNA 1700061G19 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96229014-2	chr3	96228914	96229114	+	796.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	7942.0	NM_178214	319190.0	Mm.439791	NM_178214	ENSMUSG00000068854	Hist2h2be	AV127319|H2b-613|T25626	histone cluster 2, H2be	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80016584-4	chr10	80016464	80016664	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001142701)	promoter-TSS (NM_001142701)	-108.0	NM_001142701	70719.0	Mm.243954	NM_027521	ENSMUSG00000035697	Arhgap45	6330406L22Rik|AW539505|Ha-1|Hmha1	Rho GTPase activating protein 45	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-39817206-4	chr15	39817122	39817322	+	981.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164466, intron 7 of 9)	intron (NM_001164466, intron 7 of 9)	20177.0	NR_045788	100503072.0	Mm.446661	NR_045788	ENSMUSG00000087695	Gm16291	-	predicted gene 16291	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117070051-2	chr11	117069951	117070151	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-6732.0	NR_027059	76972.0	Mm.309167	NR_027059	ENSMUSG00000086859	Snhg20	2810008D09Rik	small nucleolar RNA host gene 20	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-54251722-2	chr11	54251622	54251822	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1823.0	NM_009969	12981.0	Mm.4922	NM_009969	ENSMUSG00000018916	Csf2	CSF|Csfgm|GMCSF|Gm-CSf|MGI-IGM	colony stimulating factor 2 (granulocyte-macrophage)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-78378657-2	chr10	78378557	78378757	+	597.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-26957.0	NM_053014	28169.0	Mm.141230	NM_053014	ENSMUSG00000001211	Agpat3	AW061257|AW493985|D10Jhu12e|lpaat3	1-acylglycerol-3-phosphate O-acyltransferase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-74213962-3	chr18	74213856	74214056	+	919.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14|LTR|ERV1	-2256.0	NM_028868	74322.0	Mm.17537	NM_028868	ENSMUSG00000024560	Cxxc1	2410002I16Rik|5830420C16Rik|AI426635|Cfp1|Cgbp|PHF18	CXXC finger 1 (PHD domain)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-87488928-4	chr12	87488840	87489040	+	970.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A2-int|LTR|ERVL-MaLR	-16641.0	NM_025507	66354.0	Mm.271174	NM_025507	ENSMUSG00000021039	Snw1	2310008B08Rik|AW048543|NCoA-62|SKIP|Skiip	SNW domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-185364192-1	chr1	185364092	185364292	+	740.75	f0_balb.idr	intron (NM_001357474, intron 1 of 32)	intron (NM_001357474, intron 1 of 32)	1148.0	NM_001357474	107508.0	Mm.154511	NM_029735	ENSMUSG00000026615	Eprs	2410081F06Rik|3010002K18Rik|C79379|Qprs	glutamyl-prolyl-tRNA synthetase	protein-coding	1.72881600491176	1.94202434584387	1.14644325943375	1.82187537074906	2.28604601583516	2.4068926295911	1.38867704391922	1.6950254492129	0.903936024113955	0.394806225075494	0.882837719236596
Merged-chr7-49122686-2	chr7	49122586	49122786	+	569.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_154465, exon 4 of 4)	non-coding (NR_154465, exon 4 of 4)	39472.0	NR_154465	108167511.0	Mm.400599	NR_154465		9130015G15Rik	-	RIKEN cDNA 9130015G15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-15160075-3	chr3	15159974	15160174	+	693.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	172228.0	NM_001076679	751864.0	Mm.431296	NM_001076679	ENSMUSG00000078783	Gm9733	-	predicted gene 9733	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-116999858-4	chr2	116999748	116999948	+	712.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	99696.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-35068337-3	chr4	35068217	35068417	+	834.311096	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178061, intron 2 of 3)	intron (NM_178061, intron 2 of 3)	-83738.0	NM_199157	387510.0	Mm.386929	NM_199157	ENSMUSG00000042993	Ifnk	-	interferon kappa	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141547134-4	chr4	141547043	141547243	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_030695, exon 1 of 1)	non-coding (NR_030695, exon 1 of 1)	981.0	NR_030695	320456.0	Mm.32859	NM_177163		B330016D10Rik	-	RIKEN cDNA B330016D10 gene	ncRNA	2.56308404009323	3.4364197569008	1.80063554412154	2.15808061770448	3.09240193651145	2.32455911110956	3.01926210410624	3.65842549777966	0.83459026917528	0.278438228832344	0.781877485457278
Merged-chr13-81230332-4	chr13	81230234	81230434	+	981.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 85 of 89)	intron (NM_054053, intron 85 of 89)	266260.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-118486124-1	chr7	118486024	118486224	+	553.0	f1_c57bl6.idr	3' UTR (NM_001033380, exon 1 of 1)	3' UTR (NM_001033380, exon 1 of 1)	5851.0	NM_001033380	319622.0	Mm.323386	NM_001033380	ENSMUSG00000095115	Itpripl2	C130081G24|E030018N11Rik	inositol 1,4,5-triphosphate receptor interacting protein-like 2	protein-coding	2.50081347060225	3.06201417355097	2.09550979678749	2.31622840683919	2.75830679730032	2.48219025949586	1.72251435870865	2.44492478488471	-0.286760087987754	0.727135014690114	0.998431161219273
Merged-chr15-81102394-2	chr15	81102294	81102494	+	981.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001082536, intron 2 of 13)	intron (NM_001082536, intron 2 of 13)	2653.0	NM_153049	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-105348003-4	chr11	105347877	105348077	+	859.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008626, exon 26 of 30)	exon (NM_008626, exon 26 of 30)	55331.0	NM_008626	17534.0	Mm.235616	NM_008626	ENSMUSG00000020695	Mrc2	Endo180|mKIAA0709|uPARAP	mannose receptor, C type 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81190287-1	chr15	81190187	81190387	+	1000.0	f1_balb.idr	promoter-TSS (NR_015603)	promoter-TSS (NR_015603)	470.0	NM_001082536	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-24781299-4	chr13	24781172	24781372	+	934.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19335.0	NM_020567	57441.0	Mm.12239	NM_020567	ENSMUSG00000006715	Gmnn	AW546347|Gem	geminin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-61126801-2	chr18	61126701	61126901	+	740.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037859, intron 15 of 21)	intron (NM_001037859, intron 15 of 21)	9333.0	NR_105949	102466212.0		NR_105949	ENSMUSG00000098389	Mir6983	Gm27496|mmu-mir-6983	microRNA 6983	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-110471750-4	chr13	110471648	110471848	+	878.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	76704.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	0.357874405086225	1.08706743874111	0.37899925071444	0.864765978542217	0.681223795287067	1.42468761436724	0.381230589646426	0.372516457601971	0.422142996933823	0.813366456186587	1
Merged-chr19-41290251-2	chr19	41290151	41290351	+	570.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 13 of 16)	B3|SINE|B2	-26247.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-106933342-3	chr8	106933237	106933437	+	687.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2413.0	NM_009229	20650.0	Mm.30228	NM_009229	ENSMUSG00000041308	Sntb2	Snt2	syntrophin, basic 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80661055-2	chr10	80660955	80661155	+	934.375	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3984.0	NM_145361	208198.0	Mm.60720	NM_145361	ENSMUSG00000003344	Btbd2	2610037C03Rik|4930512K17Rik	BTB (POZ) domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-108098647-3	chr11	108098562	108098762	+	879.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011101, intron 3 of 16)	L1MB8|LINE|L1	101814.0	NR_106082	102465705.0		NR_106082	ENSMUSG00000098989	Mir7223	Gm28009|mmu-mir-7223	microRNA 7223	ncRNA	4.95350818749591	4.91782211594967	4.97262749712498	5.15375178768867	1.44336773372822	2.32243287417785	2.80519394141066	2.5279606191712	-3.90839309574617	4.80410866488398e-12	1.37237370860186e-09
Merged-chr6-89362675-8	chr6	89362579	89362779	+	948.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008881)	promoter-TSS (NM_008881)	-66.0	NM_008881	18844.0	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-130129578-4	chr5	130129458	130129658	+	889.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013837, exon 4 of 6)	exon (NM_013837, exon 4 of 6)	-15330.0	NM_172509	212919.0	Mm.55812	NM_172509	ENSMUSG00000034110	Kctd7	4932409E18|9430010P06Rik	potassium channel tetramerisation domain containing 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-74397477-4	chr1	74397383	74397583	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_153088)	TTS (NM_153088)	3173.0	NR_029743	387219.0		NR_029743	ENSMUSG00000065468	Mir26b	Mirn26b|mir-26b|mmu-mir-26b	microRNA 26b	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-143990277-4	chr5	143990165	143990365	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177682, intron 14 of 14)	intron (NM_177682, intron 14 of 14)	24588.0	NM_177682	231874.0	Mm.320432	NM_177682	ENSMUSG00000029617	Ccz1	AU022870	CCZ1 vacuolar protein trafficking and biogenesis associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-24988405-2	chr19	24988305	24988505	+	744.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR12|LTR|ERV1	-11124.0	NM_028785	76088.0	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19143321-2	chr7	19143221	19143421	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026111, intron 5 of 6)	intron (NM_026111, intron 5 of 6)	5875.0	NM_026111	67369.0	Mm.234876	NM_026111	ENSMUSG00000030407	Qpctl	1810019P04Rik|BB101812|gQC	glutaminyl-peptide cyclotransferase-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-11152032-1	chr4	11151932	11152132	+	628.0	f0_balb.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-4409.0	NM_001199105	60599.0	Mm.393018	NM_021897	ENSMUSG00000028211	Trp53inp1	2700057G22Rik|SIP|SIP18|SIP27|Stinp|Teap|p53DINP1	transformation related protein 53 inducible nuclear protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-56486198-3	chr8	56486096	56486296	+	646.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1228.0	NR_131020	75123.0	Mm.72666	NR_131020	ENSMUSG00000110310	4930518J21Rik	-	RIKEN cDNA 4930518J21 gene	ncRNA	-1.84354474832578	-1.81325489144778	-1.53416061964661	-1.82993901100912	-1.8414184563789	-1.81126990231468	-1.82034119297928	-1.82859217979378	-1.52252619601533	0.665276690233728	1
Merged-chr1-106756396-2	chr1	106756296	106756496	+	656.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027534, intron 1 of 9)	intron (NM_027534, intron 1 of 9)	3346.0	NM_027534	70750.0	Mm.458911	NM_027534	ENSMUSG00000009905	Kdsr	6330410P18Rik|9430079B08Rik|Fvt1	3-ketodihydrosphingosine reductase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117963554-4	chr11	117963472	117963672	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	5794.0	NM_007707	12702.0	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-57868880-3	chr1	57868808	57869008	+	692.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164566, intron 2 of 11)	intron (NM_001164566, intron 2 of 11)	23337.0	NM_001164566	67198.0	Mm.159989	NM_144882	ENSMUSG00000038305	Spats2l	2810022L02Rik|A230104H11Rik|AA987173|AI480531|AI842453|AW413586	spermatogenesis associated, serine-rich 2-like	protein-coding	0.354684100532628	0.378619708951844	1.06551334865678	0.364776918027206	0.642016027843619	0.585355919688064	1.07852858395311	0.687584671011787	0.973145965311769	0.577589694179696	1
Merged-chr15-62433771-3	chr15	62433676	62433876	+	766.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-214325.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-64784966-4	chr9	64784845	64785045	+	872.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26066.0	NM_001162917	102442.0	Mm.222473	NM_176935	ENSMUSG00000053641	Dennd4a	AI115600|AI851943|F730015K02Rik	DENN/MADD domain containing 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-14952605-2	chr8	14952505	14952705	+	823.799988	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037736, intron 10 of 27)	intron (NM_001037736, intron 10 of 27)	40942.0	NM_001037736	234094.0	Mm.240298	NM_172751	ENSMUSG00000071176	Arhgef10	6430549H08Rik|mKIAA0294	Rho guanine nucleotide exchange factor (GEF) 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-123664211-3	chr4	123664111	123664311	+	699.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199137, intron 1 of 92)	CpG	-1670.0	NR_136925	102633214.0	Mm.399387	NR_136925		Gm12925	-	predicted gene 12925	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-13128251-2	chr1	13128151	13128351	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1088.0	NM_001081209	383491.0	Mm.309380	NM_001081209	ENSMUSG00000042414	Prdm14	-	PR domain containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-76132244-4	chr5	76132153	76132353	+	983.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8020.0	NM_020611	57357.0	Mm.289446	NM_020611	ENSMUSG00000029233	Srd5a3	1110025P14Rik|A430076C09|AV364670|AW987574|D730040M03Rik|H5ar|S5AR 3|Srd5a2l	steroid 5 alpha-reductase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-122116792-4	chr10	122116702	122116902	+	913.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-2895.0	NR_027637	100043513.0	Mm.429141	NR_027637	ENSMUSG00000111952	Gm4489	Gm241	predicted gene 4489	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-123031496-2	chr7	123031396	123031596	+	554.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60932.0	NM_175023	19647.0	Mm.4480	NM_011247	ENSMUSG00000030779	Rbbp6	4933422O15Rik|AI316869|BB233631|C030034J04Rik|C77662|P2P-R|PACT	retinoblastoma binding protein 6, ubiquitin ligase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-67194402-2	chr18	67194306	67194506	+	627.5	f0_balb.idr|f1_balb.idr	intron (NM_177137, intron 5 of 11)	B3A|SINE|B2	-10953.0	NM_024190	67064.0	Mm.73777	NM_024190	ENSMUSG00000109901	Chmp1b	2810405I11Rik|Chmp1b1	charged multivesicular body protein 1B	protein-coding	0.791188910090415	1.10721918780982	0.832864838800822	0.817545634226061	2.12049294549794	1.90178831354897	1.4430859219531	1.85823595225268	4.50997415027591	0.00169729053941566	0.0296852651485555
Merged-chr5-136245400-4	chr5	136245298	136245498	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302939)	promoter-TSS (NM_001302939)	-458.0	NM_018825	23921.0	Mm.425294	NM_018825	ENSMUSG00000005057	Sh2b2	Aps	SH2B adaptor protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70071027-2	chr11	70070927	70071127	+	771.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16672.0	NM_001291132	11889.0	Mm.6559	NM_009714	ENSMUSG00000020884	Asgr1	ASGPR1|Asgr|Asgr-1|HL-1	asialoglycoprotein receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-107676350-4	chr11	107676243	107676443	+	707.950012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198298, intron 30 of 31)	intron (NM_198298, intron 30 of 31)	38621.0	NR_105897	102465562.0		NR_105897	ENSMUSG00000098497	Mir6932	Gm27691|mmu-mir-6932	microRNA 6932	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-41707772-4	chr5	41707664	41707864	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310592)	promoter-TSS (NM_001310592)	-73.0	NM_001310592	100972.0	Mm.41555	NM_027295	ENSMUSG00000029128	Rab28	2700023P08Rik|AW496496	RAB28, member RAS oncogene family	protein-coding	2.32337779215525	2.1295920860637	2.44641970103662	1.7418329082146	1.79785106210303	1.86411986253554	1.20625403046043	1.59314091193191	-1.55819796414221	0.121993636222806	0.547245267450283
Merged-chr4-45408788-4	chr4	45408682	45408882	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001009949)	promoter-TSS (NM_001009949)	-16.0	NM_001009949	230125.0	Mm.260210	NM_001009949	ENSMUSG00000045973	Slc25a51	9130208E07Rik|D130005A03Rik|Gm138|Mcart1	solute carrier family 25, member 51	protein-coding	6.70894398366628	6.29561139855352	6.57489334645568	6.36667789971088	5.66370102208157	5.31805685444496	5.80108864029594	5.38203932952498	-1.03302868124026	9.19166148103251e-06	0.000428555263404513
Merged-chr11-22782914-3	chr11	22782811	22783011	+	855.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	76824.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-99139135-3	chr9	99139031	99139231	+	680.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029094, intron 1 of 23)	intron (NM_029094, intron 1 of 23)	1080.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-55115856-2	chr8	55115756	55115956	+	563.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	161128.0	NM_001253756	234267.0	Mm.241700	NM_153581	ENSMUSG00000031517	Gpm6a	Gpm6|M6A	glycoprotein m6a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-8691249-3	chr3	8691142	8691342	+	845.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24204.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-57835635-2	chr10	57835535	57835735	+	979.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER21C|LTR|ERVL	41091.0	NM_020561	57319.0	Mm.2379	NM_020561	ENSMUSG00000019872	Smpdl3a	0610010C24Rik|AI529588|ASM3A|ASML3|ASML3A	sphingomyelin phosphodiesterase, acid-like 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-39611105-4	chr15	39611003	39611203	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053271, intron 21 of 26)	intron (NM_053271, intron 21 of 26)	-48408.0	NM_001256384	116838.0	Mm.309296	NM_053271	ENSMUSG00000037386	Rims2	2810036I15Rik|AW048769|RIM2|Rab3ip2|Rim2(+40A)|Rim2(+44A)|Rim2(+4A)|Serg2|Syt3-rs|mKIAA0751	regulating synaptic membrane exocytosis 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-101097044-4	chr13	101096941	101097141	+	910.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-135086.0	NR_046158	328324.0	Mm.402274	NR_046158	ENSMUSG00000114590	5930438M14Rik	5930438M14	RIKEN cDNA 5930438M14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-100432092-3	chr12	100432002	100432202	+	843.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033213, intron 5 of 19)	MTD|LTR|ERVL-MaLR	88720.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-69145433-3	chr12	69145360	69145560	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14|LTR|ERV1	13726.0	NM_009093	20090.0	Mm.379006	NM_009093	ENSMUSG00000034892	Rps29	-	ribosomal protein S29	protein-coding	1.80854436747872	1.01418005501829	0.991927701404817	2.10636241122177	1.47754754396996	1.01909541717138	1.9963483005871	2.35146956552946	0.644969414653906	0.611040699529942	0.975334764473647
Merged-chr16-13831746-2	chr16	13831646	13831846	+	954.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346109, intron 5 of 7)	intron (NM_001346109, intron 5 of 7)	12495.0	NM_001346111	18203.0	Mm.380410	NM_010946	ENSMUSG00000022681	Ntan1	PNAA|PNAD	N-terminal Asn amidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-36578703-4	chr15	36578613	36578813	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23140.0	NM_025712	66696.0	Mm.253627	NM_025712	ENSMUSG00000013611	Snx31	4631426E05Rik	sorting nexin 31	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-41326361-1	chr13	41326261	41326461	+	622.0	f0_balb.idr	intron (NM_001111324, intron 3 of 7)	intron (NM_001111324, intron 3 of 7)	32640.0	NM_017464	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-21573836-2	chr19	21573736	21573936	+	635.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19A|LTR|ERVK	78955.0	NM_025423	66206.0	Mm.272430	NM_025423	ENSMUSG00000035171	1110059E24Rik	-	RIKEN cDNA 1110059E24 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-90123279-1	chr9	90123179	90123379	+	655.0	f1_balb.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-8459.0	NM_024431	21761.0	Mm.426209	NM_024431	ENSMUSG00000062270	Morf4l1	MORFRG15|MRG15|TEG-189|Tex189|mKIAA4002	mortality factor 4 like 1	protein-coding	-1.50701922674419	-1.47412287328874	-1.48407100209789	-1.33571320935732	-1.50470996355699	-1.15890810839305	-1.48181896379227	-1.49077996283889	0.920591298342049	0.790001207190229	1
Merged-chr1-88095829-2	chr1	88095729	88095929	+	595.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_201642, exon 1 of 5)	exon (NM_201642, exon 1 of 5)	828.0	NM_201642	394432.0	Mm.300095	NM_201642	ENSMUSG00000090124	Ugt1a7c	A10'|A13|Ugt1a10	UDP glucuronosyltransferase 1 family, polypeptide A7C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-27239078-2	chr3	27238978	27239178	+	599.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 3 of 4)	MTD|LTR|ERVL-MaLR	56074.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-121536931-3	chr3	121536821	121537021	+	711.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4577.0	NM_145394	213603.0	Mm.33062	NM_145394	ENSMUSG00000039865	Slc44a3	BC010552	solute carrier family 44, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191317958-4	chr1	191317868	191318068	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_025424, exon 1 of 4)	exon (NM_025424, exon 1 of 4)	150.0	NM_025424	66208.0	Mm.46444	NM_025424	ENSMUSG00000037499	Nenf	1110060M21Rik|SCIRP10|Spuf	neuron derived neurotrophic factor	protein-coding	3.13292432784535	3.33465681846731	3.13615137927965	2.85084211365417	3.47117050724462	2.65291128466143	3.41248942288374	2.62539131188865	-0.0167036372158769	0.978879151566864	0.998431161219273
Merged-chr2-155682131-1	chr2	155682031	155682231	+	562.0	f0_balb.idr	intron (NM_019828, intron 1 of 18)	L1MB7|LINE|L1	10253.0	NM_019828	56407.0	Mm.234944	NM_019828	ENSMUSG00000038324	Trpc4ap	4833429F06Rik|D2Ertd113e|Trrp4ap|mFLJ00177|truss	transient receptor potential cation channel, subfamily C, member 4 associated protein	protein-coding	-0.434076717779784	-0.42179821347921	-0.425825167113016	-0.428929216284571	-0.161734415619577	-0.223616748355037	-0.424937353013432	0.294234895280759	3.58384715302718	0.147452325692557	1
Merged-chr18-84155304-2	chr18	84155204	84155404	+	877.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	67146.0	NM_146090	225791.0	Mm.147052	NM_146090	ENSMUSG00000049090	Zadh2	C530046K17Rik|PTGR-3|Pthr3	zinc binding alcohol dehydrogenase, domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-33089773-2	chr13	33089673	33089873	+	949.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_173052, intron 4 of 6)	intron (NM_173052, intron 4 of 6)	5670.0	NM_173052	282663.0	Mm.314490	NM_173052	ENSMUSG00000051029	Serpinb1b	6330533H24Rik|EIB|Serpin1b1|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 1b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-122742646-3	chr6	122742561	122742761	+	815.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011401)	promoter-TSS (NM_011401)	84.0	NM_011401	20527.0	Mm.395108	NM_011401	ENSMUSG00000003153	Slc2a3	AA408729|AL023014|AL024341|AU040424|C78366|Glut-3|Glut3	solute carrier family 2 (facilitated glucose transporter), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-70420452-4	chr18	70420276	70420476	+	999.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52078.0	NM_029019	170461.0	Mm.83623	NM_029019	ENSMUSG00000079608	Stard6	1700011K09Rik|4833424I06Rik|4933429L05Rik|AI644424	StAR-related lipid transfer (START) domain containing 6	protein-coding	2.01736447789397	2.10259110277413	2.03322617982542	2.95739171898329	1.89428752747478	3.02221594242837	2.20319223339087	2.26684698920657	0.141676550890676	0.869095574742678	0.998431161219273
Merged-chr8-85554536-4	chr8	85554422	85554622	+	974.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019794, intron 1 of 8)	intron (NM_019794, intron 1 of 8)	749.0	NM_019794	56445.0	Mm.475573	NM_019794	ENSMUSG00000031701	Dnaja2	1500017M13Rik|2010206B19Rik|DNAJ|DNJ3|Dnaj3|HIRIP4|PRO3015|mDj3	DnaJ heat shock protein family (Hsp40) member A2	protein-coding	1.23875584353503	0.920636989823443	1.67022691439603	2.21024634946202	0.853349744238701	2.31158714758826	1.81658934834935	0.883104195960333	0.0691777525650727	0.958522592648218	0.998431161219273
Merged-chr7-25477688-4	chr7	25477614	25477814	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039187)	promoter-TSS (NM_001039187)	-89.0	NM_001039187	26365.0	Mm.322502	NM_011926	ENSMUSG00000074272	Ceacam1	Bgp|Bgp1|C-CAM|CD66a|Cc1|Cea-1|Cea-7|Cea1|Cea7|Hv-2|Hv2|MHVR|MHVR1|Mhv-1|bb-1|mCEA1|mmCGM1|mmCGM1a|mmCGM2	carcinoembryonic antigen-related cell adhesion molecule 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81348737-2	chr10	81348637	81348837	+	588.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163165, intron 4 of 9)	intron (NM_001163165, intron 4 of 9)	1689.0	NM_001163165	15353.0	Mm.38474	NM_010440	ENSMUSG00000020232	Hmg20b	AW610687|BRAF35|Hmgx2|Hmgxb2|Smarce1r	high mobility group 20B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-33993126-1	chr17	33993026	33993226	+	556.0	f1_balb.idr	Intergenic	RMER19B2|LTR|ERVK	7207.0	NM_001001892	14972.0	Mm.422886	NM_001001892	ENSMUSG00000061232	H2-K1	H-2K|H-2K(d)|H2-K|K-f	histocompatibility 2, K1, K region	protein-coding	1.90874155678997	1.02212425907222	0.99167734109744	1.77319861709018	1.68423979522271	2.9709752523586	2.42483382408645	0.97146553996939	1.80936525563766	0.129971495737393	0.564921023139857
Merged-chr8-94532999-4	chr8	94532921	94533121	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153507)	promoter-TSS (NM_153507)	-7.0	NM_153507	234577.0	Mm.291815	NM_153507	ENSMUSG00000034361	Cpne2	3322401K10Rik	copine II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24463979-4	chr17	24463892	24464092	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6481.0	NM_025954	67078.0	Mm.28541	NM_025954	ENSMUSG00000043445	Pgp	1700012G19Rik|AI481330|AUM|G3PP	phosphoglycolate phosphatase	protein-coding	4.27835031742722	5.21733483983392	4.67909859060665	5.04025891154527	5.47790470616019	5.17432313256566	5.20379503005699	5.76252452754045	0.694874578568068	0.0342460779811523	0.261044754522151
Merged-chr7-81538283-1	chr7	81538183	81538383	+	730.0	f1_balb.idr	intron (NM_172904, intron 11 of 12)	intron (NM_172904, intron 11 of 12)	8367.0	NR_035501	100316717.0		NR_035501	ENSMUSG00000104618	Mir1839	mir-1839|mmu-mir-1839	microRNA 1839	ncRNA	2.76717175676324	1.65701173522736	2.17744798922219	2.11229335342478	2.92244499948796	2.10514624811052	1.33639734216338	3.40277837473814	0.868189985849768	0.353926324851881	0.853132398390271
Merged-chr10-104949173-1	chr10	104949073	104949273	+	549.0	f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	625306.0	NM_177368	278279.0	Mm.25225	NM_177368	ENSMUSG00000036019	Tmtc2	8430438D04Rik|D330034A10Rik	transmembrane and tetratricopeptide repeat containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99000833-5	chr15	99000726	99000926	+	916.2000119999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	14861.0	NR_045991	75951.0	Mm.441657	NR_045991	ENSMUSG00000097587	4930578M01Rik	3010001K12Rik	RIKEN cDNA 4930578M01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-22780485-4	chr11	22780456	22780656	+	928.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	79179.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153784834-4	chr2	153784737	153784937	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_036629, intron 3 of 7)	intron (NR_036629, intron 3 of 7)	3958.0	NR_036629	100504221.0	Mm.246778	NM_177849	ENSMUSG00000044083	Efcab8	A630008I04|EG329541	EF-hand calcium binding domain 8	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5441909-1	chr17	5441809	5442009	+	551.0	f1_c57bl6.idr	Intergenic	Intergenic	-1649.0	NM_027457	70544.0	Mm.46654	NM_027457	ENSMUSG00000004945	Tmem242	1110008A10Rik|2310046K16Rik|5730437N04Rik	transmembrane protein 242	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-79290657-2	chr11	79290557	79290757	+	723.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35962.0	NM_019653	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-118994424-4	chr12	118994367	118994567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28046.0	NM_029961	77706.0	Mm.261496	NM_029961	ENSMUSG00000072791	Abcb5	9230106F14Rik	ATP-binding cassette, sub-family B (MDR/TAP), member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-118602045-4	chr2	118601942	118602142	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009773, intron 2 of 22)	intron (NM_009773, intron 2 of 22)	3831.0	NM_009773	12236.0	Mm.29133	NM_009773	ENSMUSG00000040084	Bub1b	AU045529|BUBR1	BUB1B, mitotic checkpoint serine/threonine kinase	protein-coding	1.39861233567195	2.49446489066358	2.67918700735379	1.22042583048547	1.89606128780201	1.78528673562347	2.61672310171818	2.44468979810206	0.267968986511817	0.791346246484385	0.998431161219273
Merged-chr4-134287327-4	chr4	134287223	134287423	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163794)	promoter-TSS (NM_001163794)	-70.0	NM_001163794	230809.0	Mm.22778	NM_146156	ENSMUSG00000050890	Pdik1l	BC027088|stk35l2	PDLIM1 interacting kinase 1 like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-56019100-2	chr7	56018960	56019160	+	675.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_153578, intron 1 of 4)	intron (NM_153578, intron 1 of 4)	513.0	NM_153578	233280.0	Mm.389901	NM_153578	ENSMUSG00000047037	Nipa1	1110027G09Rik|A830014A18Rik|FSP3|Spg6	non imprinted in Prader-Willi/Angelman syndrome 1 homolog (human)	protein-coding	2.07475915366906	0.873607543758043	1.94764011422737	0.837055902634123	1.69306712212359	0.878108283606741	2.0597116693431	0.839915197166115	-0.251666675812049	0.861721506461938	0.998431161219273
Merged-chr3-89331047-4	chr3	89330944	89331144	+	678.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6984.0	NM_007910	13639.0	Mm.16332	NM_007910	ENSMUSG00000028040	Efna4	EFL-4|Epl4|LERK-4	ephrin A4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36667813-2	chr18	36667713	36667913	+	820.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_028355, exon 3 of 4)	non-coding (NR_028355, exon 3 of 4)	2498.0	NM_001164406	24068.0	Mm.29058	NM_025291	ENSMUSG00000006050	Sra1	AA959952|Sra|Srap|Straa1|Strra1	steroid receptor RNA activator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-40229037-4	chr9	40228934	40229134	+	838.729126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36718.0	NM_030713	80902.0	Mm.132196	NM_030713	ENSMUSG00000025602	Zfp202	C130037E22Rik|Znf202	zinc finger protein 202	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-9186636-4	chr5	9186514	9186714	+	970.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24838.0	NR_152861	23857.0	Mm.22480	NM_011806	ENSMUSG00000042508	Dmtf1	Dimp|Dmp1	cyclin D binding myb-like transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-95925730-3	chr5	95925632	95925832	+	578.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31207.0	NM_018866	55985.0	Mm.10116	NM_018866	ENSMUSG00000023078	Cxcl13	4631412M08Rik|ANGIE2|Angie|BCA-1|BLC|BLR1L|Scyb13	chemokine (C-X-C motif) ligand 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-6406975-2	chr4	6406875	6407075	+	671.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010945, intron 26 of 30)	intron (NM_010945, intron 26 of 30)	41295.0	NM_001098227	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-45795871-4	chr11	45795776	45795976	+	979.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12207.0	NR_045876	100009664.0	Mm.415439	NR_045876		F630206G17Rik	-	RIKEN cDNA F630206G17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-63928948-2	chr15	63928848	63929048	+	678.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_144846)	TTS (NM_144846)	14487.0	NR_029414	74460.0	Mm.390801	NR_029414	ENSMUSG00000100127	Gsdmcl-ps	4933426G20Rik	gasdermin C-like, pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-100615319-4	chr15	100615230	100615430	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011873)	promoter-TSS (NM_011873)	-220.0	NR_045701	78445.0	Mm.44383	NR_045701	ENSMUSG00000097093	C330013E15Rik	-	RIKEN cDNA C330013E15 gene	ncRNA	5.38339915706264	5.89249091803535	5.86396736112822	5.71022583985892	5.0595055077801	4.34941400321014	5.04839128892358	5.15747652795573	-0.89142501855226	0.002761204995696	0.0426552843841552
Merged-chr9-44315282-1	chr9	44315182	44315382	+	565.0	f1_balb.idr	intron (NM_001359259, intron 8 of 13)	intron (NM_001359259, intron 8 of 13)	5000.0	NM_001359259	71764.0	Mm.491174	NM_027909	ENSMUSG00000032120	C2cd2l	1300006O23Rik|Tmem24	C2 calcium-dependent domain containing 2-like	protein-coding	1.21166370653269	0.947331945134882	0.586752478687344	0.884046302428027	1.05392630755912	0.955265318884825	0.588555519394233	0.888926759389758	-0.245797809270836	0.871646369412239	1
Merged-chr12-89365017-2	chr12	89364917	89365117	+	653.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001198587, intron 9 of 19)	intron (NM_001198587, intron 9 of 19)	411627.0	NM_172544	18191.0	Mm.425766	NM_172544	ENSMUSG00000066392	Nrxn3	-	neurexin III	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117745717-2	chr10	117745617	117745817	+	541.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029875, intron 1 of 4)	intron (NM_029875, intron 1 of 4)	641.0	NM_029875	215436.0	Mm.256753	NM_029875	ENSMUSG00000060181	Slc35e3	9330166G04Rik|AI481200	solute carrier family 35, member E3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-179806404-2	chr1	179806304	179806504	+	578.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-2389.0	NM_026375	226747.0	Mm.128165	NM_026375	ENSMUSG00000026491	Ahctf1	6230412P20Rik|AV011447|Elys	AT hook containing transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35392947-3	chr17	35392853	35393053	+	858.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger7|DNA|TcMar-Tigger	-1146.0	NR_051981	15016.0	Mm.439648	NR_051981	ENSMUSG00000055413	H2-Q5	H-2Q5|Qa-5|Qa5|Qat-5	histocompatibility 2, Q region locus 5	pseudo	0.680120656163254	0.720192405170697	1.1805734975828	0.15603780473233	0.147045632456918	0.172226909090023	0.164124205994787	0.157141657223968	-4.34495278950892	0.0299202546724364	1
Merged-chr11-120382485-2	chr11	120382385	120382585	+	997.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001195023, exon 17 of 17)	exon (NM_001195023, exon 17 of 17)	-3739.0	NM_027980	71885.0	Mm.274890	NM_027980	ENSMUSG00000025384	Faap100	2310003H01Rik	Fanconi anemia core complex associated protein 100	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-67187813-1	chr18	67187713	67187913	+	588.0	f1_balb.idr	intron (NM_177137, intron 4 of 11)	intron (NM_177137, intron 4 of 11)	-17546.0	NM_024190	67064.0	Mm.73777	NM_024190	ENSMUSG00000109901	Chmp1b	2810405I11Rik|Chmp1b1	charged multivesicular body protein 1B	protein-coding	-0.447248981308782	-0.435469972784483	-0.439337063882386	-0.44231527325461	-0.446515881805055	-0.0785005768670918	-0.260262427398552	0.185032719210038	3.52678963661502	0.15887831274152	1
Merged-chr8-119838535-4	chr8	119838444	119838644	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028071, intron 2 of 3)	ID_B1|SINE|B4	2035.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-122568707-2	chr6	122568607	122568807	+	635.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14898.0	NM_009645	11628.0	Mm.391503	NM_009645	ENSMUSG00000040627	Aicda	Aid|Arp2	activation-induced cytidine deaminase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-38160281-2	chr6	38160181	38160381	+	656.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_194061, intron 10 of 19)	intron (NM_194061, intron 10 of 19)	-35695.0	NM_080467	140494.0	Mm.462308	NM_080467	ENSMUSG00000038600	Atp6v0a4	Atp6n1b|a4	ATPase, H+ transporting, lysosomal V0 subunit A4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-120871544-3	chr7	120871441	120871641	+	810.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001267710, intron 2 of 17)	MLT1A|LTR|ERVL-MaLR	20352.0	NM_001267711	13631.0	Mm.25997	NM_007908	ENSMUSG00000035064	Eef2k	C86191|eEF-2K	eukaryotic elongation factor-2 kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19800950-3	chr7	19800864	19801064	+	816.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4155.0	NM_023224	80794.0	Mm.81698	NM_023224	ENSMUSG00000040525	Cblc	2310076I21Rik|2310079L19Rik|Cbl3	Casitas B-lineage lymphoma c	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-73505964-3	chr15	73505870	73506070	+	941.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6590.0	NR_152151	105841.0	Mm.322557	NM_001081066	ENSMUSG00000036661	Dennd3	AI447457|E030003N15Rik	DENN/MADD domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-94371762-2	chr11	94371679	94371879	+	675.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_029600, exon 8 of 31)	exon (NM_029600, exon 8 of 31)	21197.0	NM_029600	76408.0	Mm.23942	NM_029600	ENSMUSG00000020865	Abcc3	1700019L09Rik|ABC31|MLP2|MOAT-D|MRP3	ATP-binding cassette, sub-family C (CFTR/MRP), member 3	protein-coding	-1.36245527554381	-1.47758440807466	-1.48704571646499	-1.19707836829368	-1.50667469222183	-1.47553410307769	-1.4849038836314	-1.49342636832094	-1.86907304515541	0.591535440840713	1
Merged-chr2-148730879-2	chr2	148730779	148730979	+	817.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019632, intron 1 of 10)	intron (NM_019632, intron 1 of 10)	1541.0	NM_019632	17957.0	Mm.274308	NM_019632	ENSMUSG00000027438	Napb	Brp14|E161|I47|SNARE|b-SNAP	N-ethylmaleimide sensitive fusion protein attachment protein beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27261501-2	chr2	27261401	27261601	+	555.25	f1_balb.idr|f1_c57bl6.idr	TTS (NM_009500)	TTS (NM_009500)	-14198.0	NM_138665	192166.0	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-157139052-4	chr2	157138955	157139155	+	991.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3833.0	NM_018851	56045.0	Mm.248478	NM_018851	ENSMUSG00000027639	Samhd1	E330031J07Rik|Mg11	SAM domain and HD domain, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180810678-2	chr1	180810578	180810778	+	926.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008210, intron 2 of 3)	B1F|SINE|Alu	2927.0	NM_008210	15078.0	Mm.138832	NM_008210	ENSMUSG00000060743	H3f3a	EyeLinc14|H3.3A	H3 histone, family 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-92682068-2	chr1	92681968	92682168	+	964.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33227.0	NM_153114	260301.0	Mm.219545	NM_153114	ENSMUSG00000044055	Otos	OTOSP	otospiralin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-66084007-2	chr18	66083907	66084107	+	653.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178793, intron 4 of 10)	intron (NM_178793, intron 4 of 10)	-81372.0	NM_001172062	70361.0	Mm.290857	NM_027400	ENSMUSG00000041891	Lman1	2610020P13Rik|AI326273|AU043785|C730041J05|ERGIC53|F5F8D|MCFD1|MR60|P58|gp58	lectin, mannose-binding, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116435269-2	chr11	116435169	116435369	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_176902, intron 2 of 2)	intron (NM_176902, intron 2 of 2)	1056.0	NR_003376	664849.0	Mm.258466	NR_003376		Gm7367	EG664849	1110014K08Rik pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-96637532-2	chr15	96637432	96637632	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166458, intron 1 of 15)	intron (NM_001166458, intron 1 of 15)	4430.0	NM_134086	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-48329042-2	chr15	48328942	48329142	+	720.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081391, intron 6 of 70)	Lx5|LINE|L1	462947.0	NM_001081391	239420.0	Mm.309363	NM_001081391	ENSMUSG00000022311	Csmd3	4930500N14Rik|mKIAA1894	CUB and Sushi multiple domains 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-105048879-3	chr13	105048801	105049001	+	947.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029879, intron 2 of 5)	intron (NM_029879, intron 2 of 5)	6029.0	NM_029879	52882.0	Mm.100348	NM_029879	ENSMUSG00000021719	Rgs7bp	A930030I01Rik|AI842293|D13Bwg1146e|R7bp	regulator of G-protein signalling 7 binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-12121937-4	chr13	12121831	12122031	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-14986.0	NM_023868	20191.0	Mm.239871	NM_023868	ENSMUSG00000021313	Ryr2	9330127I20Rik|RYR-2	ryanodine receptor 2, cardiac	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-53130309-2	chr15	53130209	53130409	+	557.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	215874.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-92992446-4	chr1	92992338	92992538	+	908.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	13535.0	NM_022320	64095.0	Mm.152780	NM_022320	ENSMUSG00000026271	Gpr35	KPG_007	G protein-coupled receptor 35	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-128418232-4	chr7	128418153	128418353	+	978.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026418)	promoter-TSS (NM_026418)	-81.0	NM_026418	67865.0	Mm.18635	NM_026418	ENSMUSG00000030844	Rgs10	2310010N19Rik	regulator of G-protein signalling 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-33118537-1	chr14	33118437	33118637	+	669.5	f0_balb.idr	intron (NM_001146022, intron 13 of 58)	intron (NM_001146022, intron 13 of 58)	66529.0	NM_001146022	545030.0	Mm.318345	NM_001146022	ENSMUSG00000051506	Wdfy4	Gm18810	WD repeat and FYVE domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-115718436-4	chr6	115718333	115718533	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40566.0	NM_144805	94346.0	Mm.29739	NM_144805	ENSMUSG00000059900	Tmem40	9030407H20Rik|AV091463|W64236	transmembrane protein 40	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-44994507-2	chr2	44994407	44994607	+	712.099976	f1_balb.idr|f1_c57bl6.idr	exon (NM_001355289, exon 10 of 11)	exon (NM_001355289, exon 10 of 11)	28670.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-4853679-3	chr5	4853588	4853788	+	738.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011074, intron 14 of 14)	intron (NM_011074, intron 14 of 14)	-95472.0	NM_021457	14362.0	Mm.246003	NM_021457	ENSMUSG00000044674	Fzd1	AW227548|FZ-1|Fz1	frizzled class receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-53648927-4	chr19	53648828	53649028	+	807.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28378.0	NM_001170847	73713.0	Mm.313695	NM_001170847	ENSMUSG00000043639	Rbm20	1110018J23Rik|2010003H22Rik|AI646761	RNA binding motif protein 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-93267154-4	chr5	93267028	93267228	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007635)	promoter-TSS (NM_007635)	-445.0	NM_007635	12452.0	Mm.3527	NM_007635	ENSMUSG00000029385	Ccng2	-	cyclin G2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27563936-4	chr2	27563842	27564042	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48795.0	NM_080848	140858.0	Mm.28265	NM_080848	ENSMUSG00000026917	Wdr5	2410008O07Rik|AA408785|AA960360|Big|Big-3	WD repeat domain 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-14063572-4	chr13	14063473	14063673	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001331176)	promoter-TSS (NM_001331176)	-85.0	NM_010282	14593.0	Mm.148039	NM_010282	ENSMUSG00000021302	Ggps1	1810026C22Rik|9530089B04Rik|AI843169|C79210	geranylgeranyl diphosphate synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81436183-2	chr10	81436083	81436283	+	688.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT2C1|LTR|ERVL	-9010.0	NM_026756	18029.0	Mm.426936	NM_008688	ENSMUSG00000055053	Nfic	1110019L22Rik|1500041O16Rik|AA589446|AI746521|NF1-C	nuclear factor I/C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-95316162-3	chr1	95316077	95316277	+	849.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026321, intron 1 of 2)	intron (NM_026321, intron 1 of 2)	2549.0	NM_026321	67698.0	Mm.272705	NM_026321	ENSMUSG00000051185	Fam174a	2310044D20Rik|Fam174|Naa6|Tmem157	family with sequence similarity 174, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127895667-4	chr7	127895565	127895765	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178600)	promoter-TSS (NM_178600)	-48.0	NM_178600	27973.0	Mm.29703	NM_178600	ENSMUSG00000096145	Vkorc1	D7Wsu86e	vitamin K epoxide reductase complex, subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-128765425-2	chr6	128765325	128765525	+	663.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	23216.0	NM_001159904	17059.0	Mm.480764	NM_008527	ENSMUSG00000030325	Klrb1c	AI462337|CD161|Klrb1b|Ly-59|Ly55c|Ly59|NK-RP1|NK1.1|NKR-P1.9|NKRP1|NKRP140|Nk-1|Nk-1.2|Nk1|Nk1.2|Nkrp1b|Nkrp1c|ly-55c	killer cell lectin-like receptor subfamily B member 1C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-83883853-4	chr7	83883780	83883980	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_030705, exon 1 of 1)	5' UTR (NM_030705, exon 1 of 1)	461.0	NM_030705	80889.0	Mm.272998	NM_030705	ENSMUSG00000070462	Tlnrd1	AW061151|Mesdc1	talin rod domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-44018575-4	chr16	44018470	44018670	+	923.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359085, intron 5 of 16)	intron (NM_001359085, intron 5 of 16)	-2134.0	NM_153528	207798.0	Mm.19316	NM_153528	ENSMUSG00000036292	Gramd1c	4921521N14Rik	GRAM domain containing 1C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-75549202-3	chr9	75549093	75549293	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357828, intron 1 of 10)	intron (NM_001357828, intron 1 of 10)	10464.0	NM_016963	50875.0	Mm.38445	NM_016963	ENSMUSG00000058587	Tmod3	U-Tmod|UTMOD	tropomodulin 3	protein-coding	3.52294275466848	3.47234845167133	3.28134906226469	2.81994592451887	3.05533345199095	3.13626176219916	2.67652053556626	2.10185652377199	-0.869873283110145	0.183670939342956	0.658502415347141
Merged-chr15-85671953-2	chr15	85671853	85672053	+	864.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-31820.0	NR_110483	102800312.0	Mm.33117	NR_110483		Lncppara	Lincppara|Mirlet7bhg|linc-Ppara	long noncoding RNA near Ppara	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-145292472-1	chr7	145292372	145292572	+	545.0	f1_balb.idr	Intergenic	MLTR14|LTR|ERV1	-8437.0	NM_145379	211577.0	Mm.215151	NM_145379	ENSMUSG00000031070	Mrgprf	BC019711|Mgrc|MrgF	MAS-related GPR, member F	protein-coding	1.04737938790444	1.56912738538745	1.9028700515248	0.864541904105423	1.52223504513458	1.39962000504544	2.5686782308365	0.86772622868604	0.987110808544916	0.435717152760008	0.907834077091723
Merged-chr16-33937781-1	chr16	33937681	33937881	+	554.0	f0_balb.idr	intron (NM_001145884, intron 10 of 14)	intron (NM_001145884, intron 10 of 14)	29257.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-45980595-2	chr11	45980495	45980695	+	895.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_173384, exon 1 of 5)	exon (NM_173384, exon 1 of 5)	285.0	NM_173384	214105.0	Mm.66708	NM_173384	ENSMUSG00000040489	Sox30	-	SRY (sex determining region Y)-box 30	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-101653792-4	chr14	101653730	101653930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016723)	promoter-TSS (NM_016723)	-137.0	NM_016723	50933.0	Mm.275970	NM_016723	ENSMUSG00000022111	Uchl3	-	ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-114144164-3	chr7	114144064	114144264	+	831.305542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-26383.0	NM_025846	66922.0	Mm.276572	NM_025846	ENSMUSG00000055723	Rras2	2610016H24Rik|C86394|TC21	related RAS viral (r-ras) oncogene 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-53519829-4	chr11	53519732	53519932	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252332)	promoter-TSS (NM_001252332)	96.0	NM_001347496	20362.0	Mm.274399	NM_033144	ENSMUSG00000018398	Sept8	AW046166|Sepl	septin 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114687656-2	chr11	114687556	114687756	+	701.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_053273, intron 2 of 13)	L3|LINE|CR1	12188.0	NM_053273	117160.0	Mm.271934	NM_053273	ENSMUSG00000034714	Ttyh2	1110001A03Rik	tweety family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-24305447-4	chr18	24305335	24305535	+	844.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33931.0	NR_152129	328919.0	Mm.118671	NR_152129		Gm38410	9530053H22	predicted gene, 38410	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3083389-2	chr4	3083289	3083489	+	814.916687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-88694.0	NM_001167534	100312470.0	Mm.480297	NM_001167534	ENSMUSG00000115072	Vmn1r2	Gm11776	vomeronasal 1 receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-130664324-4	chr2	130664324	130664524	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029832, intron 1 of 8)	CpG	221.0	NM_029832	77006.0	Mm.440063	NM_029832	ENSMUSG00000068290	Ddrgk1	1110001I20Rik|2600009E05Rik|AI326138|Ufbp1	DDRGK domain containing 1	protein-coding	5.67326916004644	4.97959939680239	5.47285136780218	5.28222905597983	5.83563039026251	5.34369264793964	5.29124389091071	6.11477601519626	0.35684343269791	0.229555160433649	0.72314094561953
Merged-chr15-86191629-4	chr15	86191523	86191723	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-5482.0	NM_145475	223753.0	Mm.222685	NM_145475	ENSMUSG00000035891	Cerk	AI848610|D330016D08Rik|mKIAA1646	ceramide kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-27189750-2	chr14	27189650	27189850	+	645.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289686, intron 2 of 12)	intron (NM_001289686, intron 2 of 12)	45757.0	NM_001289686	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-10607843-2	chr17	10607743	10607943	+	925.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027032, intron 2 of 4)	intron (NM_027032, intron 2 of 4)	151627.0	NR_077238	319750.0	Mm.383485	NR_077237	ENSMUSG00000089633	A230009B12Rik	-	RIKEN cDNA A230009B12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-22059983-3	chr8	22059879	22060079	+	786.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001243161)	promoter-TSS (NM_001243161)	95.0	NM_007511	11979.0	Mm.87854	NM_007511	ENSMUSG00000006567	Atp7b	Atp7a|WND|tx	ATPase, Cu++ transporting, beta polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-40471601-4	chr12	40471507	40471707	+	822.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	25554.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-86623770-2	chr11	86623670	86623870	+	578.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356531, intron 7 of 11)	B3|SINE|B2	-39612.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105686864-2	chr8	105686764	105686964	+	714.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357333, intron 3 of 38)	intron (NM_001357333, intron 3 of 38)	590.0	NM_001357333	234695.0	Mm.471640	NM_001033320	ENSMUSG00000050357	Carmil2	CG1399-PB|D130029J02Rik|Gm585|Rltpr	capping protein regulator and myosin 1 linker 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-9133341-2	chr15	9133241	9133441	+	804.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013787, intron 2 of 9)	intron (NM_013787, intron 2 of 9)	7113.0	NM_013787	27401.0	Mm.35584	NM_013787	ENSMUSG00000054115	Skp2	4930500A04Rik|FBXL1|FWD1|p45	S-phase kinase-associated protein 2 (p45)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167696810-3	chr2	167696809	167697009	+	852.5793460000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_110334, exon 2 of 2)	non-coding (NR_110334, exon 2 of 2)	5732.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-142904414-2	chr5	142904314	142904514	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_007393, exon 4 of 6)	exon (NM_007393, exon 4 of 6)	2340.0	NM_007393	11461.0	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-164832471-2	chr2	164832371	164832571	+	742.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001038492)	promoter-TSS (NM_001038492)	-401.0	NM_001038492	19025.0	Mm.359633	NM_008906	ENSMUSG00000017760	Ctsa	AU019505|PPCA|Ppgb	cathepsin A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-6166851-2	chr2	6166751	6166951	+	683.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26400.0	NR_040333	320132.0	Mm.445891	NR_040333	ENSMUSG00000087125	A230108P19Rik	-	RIKEN cDNA A230108P19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-34580090-4	chr15	34579958	34580158	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145469, intron 8 of 10)	intron (NM_145469, intron 8 of 10)	84747.0	NM_152894	67724.0	Mm.248779	NM_026340	ENSMUSG00000022325	Pop1	4932434G09Rik	processing of precursor 1, ribonuclease P/MRP family, (S. cerevisiae)	protein-coding	4.61535572387625	4.27586794496905	4.53714336839088	4.41850638465587	4.75109579686853	4.71338588993856	4.71062095263277	4.38966238184565	0.222579512260593	0.537294443541364	0.953963493057627
Merged-chr14-55735307-4	chr14	55735199	55735399	+	971.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR49|LTR|ERVK	10385.0	NM_026819	52585.0	Mm.21623	NM_026819	ENSMUSG00000002332	Dhrs1	1110029G07Rik|AW112170|D14Ertd484e	dehydrogenase/reductase (SDR family) member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-143888682-1	chr1	143888582	143888782	+	911.5	f0_balb.idr	Intergenic	Intergenic	111404.0	NM_019562	56207.0	Mm.261004	NM_019562	ENSMUSG00000018189	Uchl5	5830413B11Rik|Uch37	ubiquitin carboxyl-terminal esterase L5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-102487397-2	chr4	102487297	102487497	+	552.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_019840, exon 2 of 15)	exon (NM_019840, exon 2 of 15)	-82663.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-77774038-4	chr18	77773939	77774139	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357532)	promoter-TSS (NM_001357532)	-154.0	NM_001357531	225745.0	Mm.39293	NM_146089	ENSMUSG00000041840	Haus1	BC024400|Ccdc5|HEI-C	HAUS augmin-like complex, subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117109834-4	chr11	117109737	117109937	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5335.0	NR_029459	74136.0	Mm.272312	NM_028777	ENSMUSG00000020823	Sec14l1	1200017E04Rik|2810012L19Rik|Naa-35	SEC14-like lipid binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-82832672-3	chr1	82832593	82832793	+	871.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6767.0	NM_010472	15463.0	Mm.392569	NM_010472	ENSMUSG00000026159	Agfg1	AU045498|C130049H11Rik|C85612|D730048C23Rik|Hrb|RAB|Rip	ArfGAP with FG repeats 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-35493725-4	chr2	35493761	35493961	+	988.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32412.0	NM_001145821	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-8839903-2	chr19	8839803	8840003	+	881.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290823)	promoter-TSS (NM_001290823)	575.0	NM_008144	14705.0	Mm.345134	NM_008144	ENSMUSG00000071657	Bscl2	2900097C17Rik|AI046355|Gng3lg	Berardinelli-Seip congenital lipodystrophy 2 (seipin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-92457848-4	chr16	92457753	92457953	+	792.229126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081549, intron 1 of 3)	MLT1A|LTR|ERVL-MaLR	8316.0	NM_001081549	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-9978555-2	chr8	9978455	9978655	+	794.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081119, intron 1 of 1)	intron (NM_001081119, intron 1 of 1)	838.0	NM_026868	68904.0	Mm.142570	NM_026868	ENSMUSG00000040396	Abhd13	1110065L07Rik|AI463703|AI788994	abhydrolase domain containing 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-70329686-4	chr16	70329569	70329769	+	976.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028803, intron 1 of 15)	intron (NM_028803, intron 1 of 15)	15720.0	NM_028803	74185.0	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	-1.07637186174354	-0.710584347346669	-1.20769886504504	-1.21655996976359	-1.22292325303089	-1.19457377095274	-1.20525683050782	-1.21497383625558	-2.53931642760192	0.437326703338958	1
Merged-chr4-6192197-4	chr4	6192098	6192298	+	886.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026534, intron 1 of 7)	MTC|LTR|ERVL-MaLR	1093.0	NM_026534	68053.0	Mm.404043	NM_026534	ENSMUSG00000028243	Ubxn2b	3110003A22Rik|6430407D20Rik|AI451665|p37	UBX domain protein 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-83609261-3	chr8	83609146	83609346	+	840.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001308227, intron 1 of 2)	intron (NM_001308227, intron 1 of 2)	698.0	NM_001308227	81489.0	Mm.282092	NM_018808	ENSMUSG00000005483	Dnajb1	0610007I11Rik|DjB1|HSPF1|Hdj1|Hsp40	DnaJ heat shock protein family (Hsp40) member B1	protein-coding	0.348875891075577	0.907737556477617	0.366857321122592	1.29865769534453	0.877388122317894	0.377431664291983	0.368769050364988	0.698392109410998	-1.05843709511751	0.562511853789622	1
Merged-chr4-43974575-2	chr4	43974475	43974675	+	892.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_027450, intron 4 of 4)	AT_rich|Low_complexity|Low_complexity	-8929.0	NM_001002787	442829.0	Mm.348215	NM_001002787	ENSMUSG00000070999	Ccin	4933417A14Rik	calicin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-59302924-2	chr11	59302824	59303024	+	668.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4006.0	NM_139298	216795.0	Mm.218794	NM_139298	ENSMUSG00000000126	Wnt9a	Wnt14	wingless-type MMTV integration site family, member 9A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-52512968-3	chr3	52512873	52513073	+	872.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3991.0	NR_153344	102631981.0	Mm.394225	NR_153344		Gm30173	-	predicted gene, 30173	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-189662076-3	chr1	189661971	189662171	+	723.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081363, exon 11 of 18)	exon (NM_001081363, exon 11 of 18)	26015.0	NM_001081363	108000.0	Mm.129746	NM_001081363	ENSMUSG00000026605	Cenpf	6530404A22Rik|AI325968|CENF|Lek1|PRO1779|mitosin	centromere protein F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-78745722-4	chr11	78745630	78745830	+	951.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5999.0	NM_197989	69109.0	Mm.341420	NM_197989	ENSMUSG00000049489	Fam58b	1810009O10Rik|Ccnq|Fam58a	family with sequence similarity 58, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-72812843-4	chr5	72812734	72812934	+	933.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013689, intron 3 of 17)	intron (NM_013689, intron 3 of 17)	55614.0	NM_001113461	21682.0	Mm.319581	NM_013689	ENSMUSG00000029217	Tec	-	tec protein tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-134955991-4	chr1	134955877	134956077	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081307)	promoter-TSS (NM_001081307)	-37.0	NM_001081307	329251.0	Mm.188709	NM_001081307	ENSMUSG00000073557	Ppp1r12b	1810037O03Rik|9530009M10Rik|AI132431|Mypt2	protein phosphatase 1, regulatory (inhibitor) subunit 12B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107553664-2	chr9	107553564	107553764	+	847.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019713)	promoter-TSS (NM_019713)	-919.0	NM_019713	56289.0	Mm.12091	NM_019713	ENSMUSG00000010067	Rassf1	123F2|AA536941|AU044980|NORE2A|RDA32|REH3P21|Rassf1A|Rassf1B|Rassf1C	Ras association (RalGDS/AF-6) domain family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-95688618-4	chr11	95688509	95688709	+	979.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21652.0	NM_008831	18673.0	Mm.263862	NM_008831	ENSMUSG00000038845	Phb	Bap32	prohibitin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-173361809-1	chr2	173361709	173361909	+	597.0	f0_balb.idr	Intergenic	Intergenic	-85276.0	NM_022995	65112.0	Mm.73682	NM_022995	ENSMUSG00000038400	Pmepa1	2210418I02Rik|AW455466|Erg1.2|N4wbp4|Stag1|Tmepai	prostate transmembrane protein, androgen induced 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-30031981-2	chr19	30031881	30032081	+	677.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144873, intron 1 of 15)	intron (NM_144873, intron 1 of 15)	1468.0	NM_144873	109113.0	Mm.313364	NM_144873	ENSMUSG00000024817	Uhrf2	2310065A22Rik|AI426270|AW214556|D130071B19Rik|Nirf	ubiquitin-like, containing PHD and RING finger domains 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-43944931-3	chr7	43944833	43945033	+	906.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033120)	promoter-TSS (NR_033120)	-79.0	NR_033120	16604.0	Mm.195787	NR_033120	ENSMUSG00000060161	Klk1b7-ps	1700127D06Rik|Klk-ps2|mGK-7	kallikrein 1-related peptidase b7, pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99398636-3	chr15	99398574	99398774	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001171036, intron 2 of 10)	intron (NM_001171036, intron 2 of 10)	5455.0	NM_001171035	110213.0	Mm.16769	NM_026669	ENSMUSG00000023010	Tmbim6	5031406P05Rik|Bi1|Tegt	transmembrane BAX inhibitor motif containing 6	protein-coding	1.43230440467374	1.24749576284984	1.81181528296412	1.75651628197101	0.950047357705668	1.25532223625001	1.56716884524214	2.27869129751487	0.154461382593463	0.896965785672069	0.998431161219273
Merged-chr18-76378900-4	chr18	76378787	76378987	+	998.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	116442.0	NM_001311070	17126.0	Mm.152699	NM_010754	ENSMUSG00000024563	Smad2	7120426M23Rik|Madh2|Madr2|Smad-2|mMad2	SMAD family member 2	protein-coding	5.89962087239122	5.29825190467778	4.81291757421841	5.21104822740309	5.54229988306639	5.59783959701022	5.13876648794158	5.78958371502763	0.189387989543426	0.541416411827383	0.954866069207078
Merged-chr4-88864758-4	chr4	88864639	88864839	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14652.0	NM_010502	15962.0	Mm.57127	NM_010502	ENSMUSG00000095498	Ifna1	Ifa1	interferon alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-53395571-2	chr19	53395471	53395671	+	550.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4937.0	NM_172429	76479.0	Mm.313687	NM_172429	ENSMUSG00000025024	Smndc1	-	survival motor neuron domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127300878-2	chr10	127300778	127300978	+	579.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001003913, intron 11 of 20)	intron (NM_001003913, intron 11 of 20)	10085.0	NM_001290183	13198.0	Mm.110220	NM_007837	ENSMUSG00000025408	Ddit3	CHOP-10|CHOP10|chop|gadd153	DNA-damage inducible transcript 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-41098542-2	chr13	41098443	41098643	+	784.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11445.0	NM_008104	107889.0	Mm.1399	NM_008104	ENSMUSG00000021362	Gcm2	Gcm-rs1|Gcm1|Gcm1-rs2	glial cells missing homolog 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-12224097-4	chr18	12224005	12224205	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008720, intron 1 of 24)	intron (NM_008720, intron 1 of 24)	12281.0	NM_008720	18145.0	Mm.3484	NM_008720	ENSMUSG00000024413	Npc1	A430089E03Rik|C85354|D18Ertd139e|D18Ertd723e|lcsd|nmf164|spm	NPC intracellular cholesterol transporter 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81305012-4	chr10	81304921	81305121	+	904.087524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293647, intron 2 of 17)	intron (NM_001293647, intron 2 of 17)	12058.0	NM_001146687	18717.0	Mm.24222	NM_008844	ENSMUSG00000034902	Pip5k1c	AI115456|AI835305|Pip5kIgamma	phosphatidylinositol-4-phosphate 5-kinase, type 1 gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-77801378-4	chr15	77801272	77801472	+	740.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022410, intron 3 of 40)	intron (NM_022410, intron 3 of 40)	40803.0	NM_022410	17886.0	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-30767077-4	chr13	30766984	30767184	+	943.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_013674)	TTS (NM_013674)	17851.0	NM_013674	16364.0	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-5351628-1	chr18	5351528	5351728	+	686.0	f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	-16821.0	NM_001360447	240186.0	Mm.118257	NM_178722	ENSMUSG00000050945	Zfp438	9430031G09|9430091M14Rik|B830013J05Rik	zinc finger protein 438	protein-coding	-1.07045467470024	-1.05039850884928	-0.615320597712597	-1.0672585780314	-0.801954590275291	-1.04797210309214	-1.05906064333965	-1.06692141825857	-0.750339699220745	0.818486702170562	1
Merged-chr14-10229362-3	chr14	10229240	10229440	+	683.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360141, intron 5 of 9)	intron (NM_001360141, intron 5 of 9)	224118.0	NM_001308286	14198.0	Mm.397619	NM_010210	ENSMUSG00000060579	Fhit	AW045638|Fra14A2	fragile histidine triad gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-93485504-3	chr15	93485412	93485612	+	828.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358750, intron 6 of 6)	intron (NM_001358750, intron 6 of 6)	87048.0	NM_001285863	223828.0	Mm.74208	NM_146062	ENSMUSG00000036167	Pphln1	CR|HSPC206|HSPC232	periphilin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81418680-2	chr10	81418580	81418780	+	608.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026756, intron 2 of 8)	intron (NM_026756, intron 2 of 8)	-2383.0	NR_106141	102465778.0		NR_106141	ENSMUSG00000105379	Mir1191b	mmu-mir-1191b	microRNA 1191b	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46908366-4	chr8	46908265	46908465	+	881.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-78522.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-87522722-2	chr3	87522490	87522690	+	997.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2988.0	NM_001083318	27049.0	Mm.219460	NM_012051	ENSMUSG00000003382	Etv3	AI414410|METS|Pe1	ets variant 3	protein-coding	0.478851371996083	-0.0248104610624313	-0.0292328796856103	0.246769411609217	0.314365760580122	-0.0238102825252975	-0.0282595316343478	0.251043168024906	-0.412837503385559	0.848135729721918	1
Merged-chr3-51732627-2	chr3	51732527	51732727	+	901.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 2 of 4)	intron (NM_001004176, intron 2 of 4)	71448.0	NM_001310482	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-94549969-3	chr16	94549877	94550077	+	703.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20229.0	NM_007890	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-36869560-1	chr17	36869460	36869660	+	547.0	f1_balb.idr	promoter-TSS (NM_011280)	promoter-TSS (NM_011280)	-14.0	NM_011280	19824.0	Mm.299155	NM_011280	ENSMUSG00000073400	Trim10	AI324236|BB139825|Herf1|Rnf9	tripartite motif-containing 10	protein-coding	-1.24900173669778	-1.22209922953844	-1.23260730456294	-1.24123895025716	-0.973140129410997	-0.88914210142926	-1.23022850670784	-1.23969388980479	2.48739720405528	0.449861323143152	1
Merged-chr18-47441705-1	chr18	47441605	47441805	+	733.0	f0_balb.idr	Intergenic	Intergenic	-10963.0	NR_033453	77668.0	Mm.98433	NR_033453		9130209A04Rik	-	RIKEN cDNA 9130209A04 gene	ncRNA	-1.84335282827126	-1.8131721693203	-1.82229904969614	-1.82979614098203	-1.69762670694229	-1.6675868413945	-1.82023292403457	-1.82845416522631	1.43472749533542	0.684151459466795	1
Merged-chr19-10979961-4	chr19	10979855	10980055	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034898, intron 6 of 6)	intron (NM_001034898, intron 6 of 6)	-5285.0	NM_023529	69826.0	Mm.273404	NM_023529	ENSMUSG00000024731	Ms4a10	2010001N17Rik	membrane-spanning 4-domains, subfamily A, member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-22331119-4	chr16	22331018	22331218	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36130.0	NR_153764	100043507.0		NR_153764		Gng5-ps	Gm15776	G protein subunit gamma 5, pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127912468-4	chr7	127912370	127912570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026370)	promoter-TSS (NM_026370)	-47.0	NM_026370	67773.0	Mm.425492	NM_026370	ENSMUSG00000030801	Kat8	2010203C02Rik|5830450F21Rik|D7Ertd629e|MOF|MYST-1|Myst1	K(lysine) acetyltransferase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-87795096-2	chr3	87794996	87795196	+	796.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033124)	promoter-TSS (NM_001033124)	66.0	NM_001033124	18211.0	Mm.80682	NM_001033124	ENSMUSG00000028072	Ntrk1	C80751|Tkr|TrkA|trk	neurotrophic tyrosine kinase, receptor, type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-72329620-4	chr5	72329494	72329694	+	977.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122756, intron 16 of 21)	intron (NM_001122756, intron 16 of 21)	126251.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-120611512-2	chr5	120611412	120611612	+	838.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_029096, exon 2 of 3)	exon (NM_029096, exon 2 of 3)	1077.0	NM_029096	100764.0	Mm.9654	NM_029096	ENSMUSG00000029600	Rita1	1110008J03Rik|AI853657|C86297|Rita	RBPJ interacting and tubulin associated 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-103820442-2	chr5	103820342	103820542	+	562.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133919, intron 7 of 19)	intron (NM_133919, intron 7 of 19)	65869.0	NM_001080798	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-41555911-1	chr4	41555811	41556011	+	602.0	f1_c57bl6.idr	intron (NM_027993, intron 1 of 5)	intron (NM_027993, intron 1 of 5)	13616.0	NM_001159583	71901.0	Mm.39215	NM_027993	ENSMUSG00000028439	Fam219a	2310028H24Rik	family with sequence similarity 219, member A	protein-coding	1.75500449069539	1.78371060955335	2.66706329807773	2.51100101623801	1.21643655977884	1.97841870653747	2.41999370818633	2.24086148886814	-0.497498528889835	0.613138517469895	0.976924404519883
Merged-chr6-60009637-2	chr6	60009537	60009737	+	795.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	-68382.0	NR_152156	434019.0	Mm.445137	NR_152156	ENSMUSG00000073045	Gm5570	EG434019	predicted gene 5570	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80846111-4	chr7	80846024	80846224	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15984.0	NM_009553	22691.0	Mm.358645	NM_009553	ENSMUSG00000038797	Zscan2	Zfp-29|Zfp29	zinc finger and SCAN domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127602751-4	chr10	127602653	127602853	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 6 of 88)	intron (NM_008512, intron 6 of 88)	18395.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-147464008-2	chr4	147463908	147464108	+	646.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039209, intron 1 of 2)	Lx8|LINE|L1	-89269.0	NM_001014397	433804.0	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154	zinc finger protein 985	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31001601-4	chr14	31001484	31001684	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026911)	promoter-TSS (NM_026911)	82.0	NM_026911	69019.0	Mm.28852	NM_026911	ENSMUSG00000021917	Spcs1	1810004F21Rik	signal peptidase complex subunit 1 homolog (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-41980941-4	chr10	41980848	41981048	+	922.7625119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034858, intron 5 of 17)	MIRc|SINE|MIR	37434.0	NM_001034858	213402.0	Mm.211320	NM_001034858	ENSMUSG00000071324	Armc2	2610018I05Rik	armadillo repeat containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-86997558-2	chr11	86997458	86997658	+	607.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-3796.0	NM_001005341	77864.0	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-118893444-2	chr10	118893344	118893544	+	756.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24541.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71405984-4	chr8	71405874	71406074	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172756)	promoter-TSS (NM_172756)	-38.0	NM_001310502	234396.0	Mm.216549	NM_172756	ENSMUSG00000046295	Ankle1	8430438L13Rik|Ankrd41|C430003I23|Lem3	ankyrin repeat and LEM domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-127457960-1	chr3	127457860	127458060	+	679.333313	f0_c57.idr	intron (NM_001327938, intron 1 of 47)	B2_Mm2|SINE|B2	41155.0	NM_001327938	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	-2.18233058068552	-2.15536956715525	-2.16352280018114	-2.04193253143548	-2.18043796738662	-2.15360272754651	-2.16167708693786	-2.16902129354933	-0.683654500252594	0.846597994014493	1
Merged-chr6-4747138-3	chr6	4746979	4747179	+	754.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_130877)	promoter-TSS (NM_130877)	125.0	NM_001130188	20392.0	Mm.8739	NM_011360	ENSMUSG00000004631	Sgce	e-SG	sarcoglycan, epsilon	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70214519-2	chr11	70214419	70214619	+	888.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_153081, exon 2 of 5)	exon (NM_153081, exon 2 of 5)	609.0	NM_153081	216867.0	Mm.289238	NM_153081	ENSMUSG00000040938	Slc16a11	AB041591|MCT 11|MNCb-2717	solute carrier family 16 (monocarboxylic acid transporters), member 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-100448828-2	chr13	100448728	100448928	+	591.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008670, intron 1 of 15)	MTD|LTR|ERVL-MaLR	4036.0	NM_008670	17940.0	Mm.6898	NM_008670	ENSMUSG00000021640	Naip1	AV364616|Birc1a|D13Lsd1|Naip|Naip-rs1	NLR family, apoptosis inhibitory protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-95195964-4	chr10	95195864	95196064	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001330138, intron 2 of 2)	ORR1E|LTR|ERVL-MaLR	-50139.0	NR_131146	628062.0		NR_131146	ENSMUSG00000112481	Gm29684	-	predicted gene, 29684	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-59262418-1	chr4	59262318	59262518	+	580.0	f0_balb.idr	intron (NR_105031, intron 2 of 3)	intron (NR_105031, intron 2 of 3)	2367.0	NR_105031	101055769.0	Mm.421401	NR_105031		Gm12596	-	predicted gene 12596	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180888436-2	chr1	180888336	180888536	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4672.0	NM_177099	320202.0	Mm.87078	NM_177099	ENSMUSG00000066652	Lefty2	6030463A22Rik|Ebaf|Lefta|Leftb|lefty-2|lefty-B	left-right determination factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-46554870-4	chr4	46554777	46554977	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164804, intron 2 of 11)	intron (NM_001164804, intron 2 of 11)	11563.0	NM_178893	107684.0	Mm.416311	NM_178893	ENSMUSG00000028337	Coro2a	9030208C03Rik|AI563590|IR10	coronin, actin binding protein 2A	protein-coding	7.48606781155768	7.84226897628763	7.20446289839225	7.54908492274476	7.25377961304708	7.0407509654533	7.13631310449567	6.95819617888041	-0.45184747450211	0.00749069220995136	0.0888645298632126
Merged-chr10-37192220-7	chr10	37192139	37192339	+	976.904785	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53313.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-121531743-2	chr10	121531654	121531854	+	896.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55040.0	NM_019786	56480.0	Mm.34580	NM_019786	ENSMUSG00000020115	Tbk1	1200008B05Rik|AI462036|AW048562	TANK-binding kinase 1	protein-coding	0.260465241674102	1.34479688337769	0.282098390301971	0.274061639365401	0.844980035341844	1.15089526388173	0.284375737976912	0.275473687654222	0.192896373663423	0.921158509338207	1
Merged-chr16-17012799-4	chr16	17012711	17012911	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038663, intron 1 of 7)	intron (NM_001038663, intron 1 of 7)	29429.0	NM_001038663	26413.0	Mm.196581	NM_011949	ENSMUSG00000063358	Mapk1	9030612K14Rik|AA407128|AU018647|C78273|ERK|Erk2|MAPK2|PRKM2|Prkm1|p41mapk|p42mapk	mitogen-activated protein kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-43766504-2	chr13	43766404	43766604	+	819.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-18608.0	NM_009856	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-128619203-4	chr4	128619105	128619305	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_205823)	promoter-TSS (NM_205823)	-586.0	NM_205823	384059.0	Mm.331901	NM_205823	ENSMUSG00000062545	Tlr12	Gm1365|Tlr11	toll-like receptor 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-6435309-2	chr15	6435209	6435409	+	568.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_023118, exon 12 of 15)	exon (NM_023118, exon 12 of 15)	-10024.0	NM_013485	12279.0	Mm.29095	NM_013485	ENSMUSG00000022149	C9	-	complement component 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-119329669-4	chr13	119329560	119329760	+	991.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MamGypLTR2b|LTR|Gypsy	79351.0	NM_008710	18115.0	Mm.132584	NM_008710	ENSMUSG00000116207	Nnt	4930423F13Rik|AI323702|BB168308	nicotinamide nucleotide transhydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85663013-2	chr12	85662913	85663113	+	971.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23707.0	NM_016767	53314.0	Mm.6672	NM_016767	ENSMUSG00000034266	Batf	B-ATF|SFA-2	basic leucine zipper transcription factor, ATF-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-119526349-4	chr1	119526240	119526440	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_146103, exon 1 of 1)	5' UTR (NM_146103, exon 1 of 1)	186.0	NM_146103	226351.0	Mm.439806	NM_146103	ENSMUSG00000098923	Tmem185b	2500001K11Rik	transmembrane protein 185B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-136518707-4	chr6	136518604	136518804	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019426)	promoter-TSS (NM_019426)	-147.0	NM_019426	54343.0	Mm.173271	NM_019426	ENSMUSG00000030213	Atf7ip	2610204M12Rik|AM|Mcaf1	activating transcription factor 7 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-122258687-4	chr7	122258579	122258779	+	984.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30446.0	NM_001316672	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-115839166-4	chr4	115839083	115839283	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021461)	promoter-TSS (NM_021461)	-15.0	NM_001285488	17346.0	Mm.209327	NM_021461	ENSMUSG00000028708	Mknk1	2410048M24Rik|Mnk1	MAP kinase-interacting serine/threonine kinase 1	protein-coding	3.8602587493931	2.69918639059138	4.82348583464436	4.2188734311113	4.04769094957402	4.08190809911208	3.95041685887538	3.76069790717446	-0.193448966344129	0.710519458159607	0.998431161219273
Merged-chr19-12722435-2	chr19	12722335	12722535	+	656.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	26645.0	NM_029550	64697.0	Mm.218561	NM_029550	ENSMUSG00000024694	Keg1	0610008P16Rik|AI316519|GS4059	kidney expressed gene 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-54986879-4	chr18	54986760	54986960	+	729.633301	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175751, intron 2 of 9)	intron (NM_175751, intron 2 of 9)	3320.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107292998-2	chr9	107292898	107293098	+	911.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3121.0	NM_178907	102626.0	Mm.222612	NM_178907	ENSMUSG00000032577	Mapkapk3	3PK|AI874665|MAPKAP-K3|MAPKAP3|MK-3|MK3|MapkKapk3	mitogen-activated protein kinase-activated protein kinase 3	protein-coding	-2.18361151404719	-2.02201993626881	-2.16403530460334	-2.1710062446989	-2.18164157430194	-2.15370992785044	-2.16211418110791	-2.16975844975469	-0.683654500252594	0.846597994014493	1
Merged-chr11-106160205-7	chr11	106160273	106160473	+	944.3618769999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356459)	promoter-TSS (NM_001356459)	-197.0	NM_172397	67803.0	Mm.21687	NM_172397	ENSMUSG00000040699	Limd2	0610025L06Rik|AI413966	LIM domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-82130919-2	chr15	82130819	82131019	+	629.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_137170, intron 2 of 5)	intron (NR_137170, intron 2 of 5)	2944.0	NR_137170	76457.0	Mm.440373	NM_172428	ENSMUSG00000068114	Ccdc134	2310042L06Rik|AW208859	coiled-coil domain containing 134	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-6274956-4	chr11	6274868	6275068	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134020)	promoter-TSS (NM_134020)	-131.0	NM_134020	103694.0	Mm.254495	NM_134020	ENSMUSG00000004394	Tmed4	1110014L17Rik|AI326346	transmembrane p24 trafficking protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-147451676-1	chr3	147451576	147451776	+	582.0	f1_balb.idr	Intergenic	L1_Mur2|LINE|L1	599309.0	NM_001302957	70892.0	Mm.187793	NM_027594	ENSMUSG00000036745	Ttll7	1110049N09Rik|4921517B04Rik|C630030B20|mTTLL7	tubulin tyrosine ligase-like family, member 7	protein-coding	-0.780507411323491	-0.770201048850769	-0.0876146456965483	-0.776182298477195	-0.499830447499526	-0.769368699703383	-0.772832506895163	-0.775727174717696	-1.48766019666651	0.617325031110839	1
Merged-chr2-73007591-4	chr2	73007492	73007692	+	909.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-27146.0	NM_001018042	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-143998737-16	chr1	143998500	143998700	+	869.78125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009061)	TTS (NM_009061)	5549.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-74993684-4	chr8	74993605	74993805	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001316753)	promoter-TSS (NM_001316753)	55.0	NM_178017	70823.0	Mm.261739	NM_178017	ENSMUSG00000034518	Hmgxb4	4733401K04Rik|AI316803|Hmgb2l1	HMG box domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-14703316-2	chr2	14703216	14703416	+	754.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_023116, intron 2 of 13)	intron (NM_023116, intron 2 of 13)	-17326.0	NR_028497	625342.0	Mm.484784	NR_028497		Gm13315	-	lactate dehydrogenase A pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-97775550-2	chr15	97775450	97775650	+	666.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7884.0	NM_001357630	223864.0	Mm.24028	NM_144850	ENSMUSG00000022469	Rapgef3	2310016P22Rik|9330170P05Rik|Epac|Epac1	Rap guanine nucleotide exchange factor (GEF) 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-120833192-2	chr14	120833092	120833292	+	633.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-78002.0	NM_023579	70572.0	Mm.221452	NM_023579	ENSMUSG00000030662	Ipo5	1110011C18Rik|5730478E03Rik|AA409333|C76941|IMB3|Kpnb3|Ranbp5|imp5	importin 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-79291157-2	chr14	79291055	79291255	+	834.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025427, intron 3 of 4)	intron (NM_025427, intron 3 of 4)	10480.0	NM_025427	66214.0	Mm.29811	NM_025427	ENSMUSG00000022018	Rgcc	1190002H23Rik|Rgc-32|Rgc32	regulator of cell cycle	protein-coding	1.7633860013961	1.61260556017727	2.03002808909786	1.96608340507453	0.928238975418155	0.992935638610041	2.04790298187408	0.954699072164489	-1.58754692252272	0.215821151406105	0.706180188649098
Merged-chr2-152735189-4	chr2	152735096	152735296	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1055.0	NM_010495	15901.0	Mm.444	NM_010495	ENSMUSG00000042745	Id1	AI323524|D2Wsu140e|Idb1|bHLHb24	inhibitor of DNA binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-54064634-3	chr11	54064548	54064748	+	554.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019417, intron 1 of 6)	intron (NM_019417, intron 1 of 6)	4369.0	NM_019417	30794.0	Mm.21830	NM_019417	ENSMUSG00000020388	Pdlim4	Ril	PDZ and LIM domain 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-88281343-2	chr7	88281243	88281443	+	965.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_009982, intron 1 of 6)	intron (NM_009982, intron 1 of 6)	3258.0	NM_001311790	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-78367172-4	chr10	78367056	78367256	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR49|LTR|ERVK	-15456.0	NM_053014	28169.0	Mm.141230	NM_053014	ENSMUSG00000001211	Agpat3	AW061257|AW493985|D10Jhu12e|lpaat3	1-acylglycerol-3-phosphate O-acyltransferase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100363512-2	chr11	100363480	100363680	+	918.916626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7439.0	NM_010404	15114.0	Mm.281700	NM_010404	ENSMUSG00000006930	Hap1	HAP-1	huntingtin-associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-138257602-3	chr2	138257503	138257703	+	710.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025431, intron 1 of 4)	intron (NM_001025431, intron 1 of 4)	1019.0	NM_001025431	228662.0	Mm.153405	NM_145534	ENSMUSG00000062098	Btbd3	mKIAA0952	BTB (POZ) domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-77371977-3	chr10	77371896	77372096	+	842.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024838, intron 1 of 11)	intron (NM_001024838, intron 1 of 11)	46277.0	NM_130895	110532.0	Mm.276815	NM_130895	ENSMUSG00000020262	Adarb1	1700057H01Rik|AW124433|AW558573|Adar2|BB220382|D10Bwg0447e|Red1	adenosine deaminase, RNA-specific, B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-148551893-4	chr5	148551765	148551965	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359201)	promoter-TSS (NM_001359201)	20.0	NM_001359200	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-15156926-4	chr3	15156810	15157010	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	175392.0	NM_001076679	751864.0	Mm.431296	NM_001076679	ENSMUSG00000078783	Gm9733	-	predicted gene 9733	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-39119320-2	chr6	39119220	39119420	+	913.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172893)	promoter-TSS (NM_172893)	847.0	NR_045813	75379.0	Mm.348014	NR_045813	ENSMUSG00000073144	4930599N23Rik	-	RIKEN cDNA 4930599N23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-137570907-4	chr6	137570823	137571023	+	960.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271595)	promoter-TSS (NM_001271595)	86.0	NM_001271595	13860.0	Mm.235346	NM_007945	ENSMUSG00000015766	Eps8	AW261790	epidermal growth factor receptor pathway substrate 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-9821413-3	chr18	9821313	9821513	+	809.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130449, intron 2 of 9)	intron (NM_130449, intron 2 of 9)	113765.0	NM_130449	140792.0	Mm.218571	NM_130449	ENSMUSG00000036103	Colec12	CL-P1|SRCL|Scara4	collectin sub-family member 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118658075-2	chr9	118657975	118658175	+	722.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 5 of 27)	B1F2|SINE|Alu	51366.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-56927547-2	chr18	56927447	56927647	+	897.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1999.0	NM_177115	320253.0	Mm.312623	NM_177115	ENSMUSG00000032656	March3	6330411I15Rik|A530081L18Rik|AI843639|MARCH-III	membrane-associated ring finger (C3HC4) 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-7774144-3	chr14	7774069	7774269	+	659.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CAG)n|Simple_repeat|Simple_repeat	-43788.0	NM_001081427	286940.0	Mm.489652	NM_134080	ENSMUSG00000025278	Flnb	AL024016|Fln-b	filamin, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-89325108-2	chr15	89325008	89325208	+	805.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_182928)	TTS (NM_182928)	2388.0	NM_182928	223780.0	Mm.210541	NM_182928	ENSMUSG00000054136	Adm2	Am2|IMD|Imdn	adrenomedullin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-55249431-4	chr13	55249325	55249525	+	824.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008739, intron 5 of 22)	intron (NM_008739, intron 5 of 22)	39643.0	NM_008739	18193.0	Mm.168965	NM_008739	ENSMUSG00000021488	Nsd1	AI528500|KMT3B	nuclear receptor-binding SET-domain protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-110663119-2	chr12	110663019	110663219	+	703.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030238, intron 70 of 76)	intron (NM_030238, intron 70 of 76)	19500.0	NM_025488	66323.0	Mm.273316	NM_025488	ENSMUSG00000056508	1700001K19Rik	-	RIKEN cDNA 1700001K19 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-80521883-2	chr15	80521783	80521983	+	714.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163189, intron 2 of 5)	intron (NM_001163189, intron 2 of 5)	38587.0	NM_001163189	383075.0	Mm.297626	NM_001163189	ENSMUSG00000050439	Enthd1	Gm1242|Gm86	ENTH domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-116602813-2	chr7	116602713	116602913	+	711.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C-int|LTR|ERVK	98444.0	NM_001360375	53322.0	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-79176417-2	chr17	79176317	79176517	+	862.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	124511.0	NM_001316729	70536.0	Mm.293870	NM_027455	ENSMUSG00000024084	Qpct	5730422A13Rik	glutaminyl-peptide cyclotransferase (glutaminyl cyclase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90739151-2	chr2	90739051	90739251	+	741.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6219.0	NM_018828	55935.0	Mm.489638	NM_018828	ENSMUSG00000008200	Fnbp4	FBP30|Fnbp30|mKIAA1014	formin binding protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-122802812-2	chr6	122802712	122802912	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER21B|LTR|ERV1	-17372.0	NM_021899	60611.0	Mm.87142	NM_021899	ENSMUSG00000003154	Foxj2	Fhx	forkhead box J2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-34826090-4	chr1	34825998	34826198	+	930.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160235, intron 3 of 7)	intron (NM_001160235, intron 3 of 7)	16952.0	NM_174997	214469.0	Mm.120151	NM_174997	ENSMUSG00000037503	Fam168b	Mani|mKIAA4042	family with sequence similarity 168, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-79748696-2	chr10	79748596	79748796	+	554.166626	f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 3 of 4)	intron (NR_038088, intron 3 of 4)	-2115.0	NM_172551	216151.0	Mm.39001	NM_172551	ENSMUSG00000020329	Polrmt	1110018N15Rik|4932416K13	polymerase (RNA) mitochondrial (DNA directed)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-37347773-4	chr9	37347693	37347893	+	909.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081429, exon 2 of 16)	exon (NM_001081429, exon 2 of 16)	599.0	NM_001081429	245902.0	Mm.390150	NM_001081429	ENSMUSG00000034303	Ccdc15	A630039F14Rik|D030074L19	coiled-coil domain containing 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-82333778-3	chr3	82333641	82333841	+	927.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24331.0	NM_001081230	213582.0	Mm.271269	NM_001081230	ENSMUSG00000033900	Map9	5033421J10Rik|5330427D05Rik|ASAP|Mtap9	microtubule-associated protein 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-62856496-4	chr16	62856395	62856595	+	805.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011173, intron 1 of 14)	intron (NM_011173, intron 1 of 14)	2188.0	NM_011173	19128.0	Mm.127156	NM_011173	ENSMUSG00000022912	Pros1	AW214361	protein S (alpha)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88443067-4	chr3	88442964	88443164	+	989.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013658, intron 10 of 14)	intron (NM_013658, intron 10 of 14)	-2113.0	NR_105978	102465611.0		NR_105978	ENSMUSG00000098655	Mir7011	Gm27677|mmu-mir-7011	microRNA 7011	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-32389836-4	chr18	32389726	32389926	+	980.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360876, intron 1 of 17)	intron (NM_001360876, intron 1 of 17)	-11542.0	NR_045403	402767.0	Mm.385109	NR_045403	ENSMUSG00000097413	A830052D11Rik	-	RIKEN cDNA A830052D11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-40882374-6	chr10	40882313	40882513	+	939.154785	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027879, intron 1 of 14)	intron (NM_027879, intron 1 of 14)	730.0	NM_027879	71713.0	Mm.46063	NM_027879	ENSMUSG00000038446	Cdc40	1200003H23Rik|EHB3|PRP17	cell division cycle 40	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-11346377-4	chr16	11346264	11346464	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028964, intron 1 of 20)	intron (NM_028964, intron 1 of 20)	23460.0	NM_028964	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-58323327-4	chr14	58323217	58323417	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	250631.0	NM_013518	14180.0	Mm.8846	NM_013518	ENSMUSG00000021974	Fgf9	Eks	fibroblast growth factor 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30718461-4	chr2	30718350	30718550	+	957.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2760.0	NR_037272	100526499.0		NR_037272	ENSMUSG00000093091	Mir3089	mir-3089|mmu-mir-3089	microRNA 3089	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-29485279-4	chr6	29485170	29485370	+	973.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029985, intron 32 of 37)	intron (NM_001029985, intron 32 of 37)	13833.0	NM_001145360	668210.0	Mm.420607	NM_001145360	ENSMUSG00000090685	Gm9047	EG668210	predicted gene 9047	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-140688479-3	chr4	140688385	140688585	+	676.194458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12988.0	NM_173867	108911.0	Mm.253	NM_173867	ENSMUSG00000040945	Rcc2	2610510H01Rik|2610529N02Rik|AA536646|AA675016|Td60|mKIAA1470	regulator of chromosome condensation 2	protein-coding	1.22360183867939	1.26965769713925	0.92226386395617	1.29886219682405	1.12836917103899	1.52472327360264	0.732401854691718	0.722947933564791	-0.463759092680667	0.743928661693952	0.998431161219273
Merged-chr7-41499881-2	chr7	41499781	41499981	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033530)	promoter-TSS (NM_001033530)	9.0	NM_001033530	101835.0	Mm.370336	NM_001033530	ENSMUSG00000074166	AW146154	AI451288	expressed sequence AW146154	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-124675295-4	chr4	124675244	124675444	+	806.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	17698.0	NM_011141	18991.0	Mm.297371	NM_011141	ENSMUSG00000090125	Pou3f1	Oct-6|Oct6|Otf-6|Otf6|Scip|Test1|Tst-1|Tst1	POU domain, class 3, transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-31927718-2	chr16	31927618	31927818	+	849.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6133.0	NM_172822	239827.0	Mm.440388	NM_172822	ENSMUSG00000045625	Pigz	F630022B06Rik	phosphatidylinositol glycan anchor biosynthesis, class Z	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-27354429-1	chr14	27354329	27354529	+	1000.0	f1_balb.idr	intron (NM_001289687, intron 1 of 9)	MLT1B|LTR|ERVL-MaLR	-6960.0	NM_001289688	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-97843357-4	chr7	97843254	97843454	+	911.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357363, intron 1 of 14)	intron (NM_001357363, intron 1 of 14)	415.0	NM_011035	18479.0	Mm.260227	NM_011035	ENSMUSG00000030774	Pak1	AW045634|PAK-1|Paka	p21 (RAC1) activated kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28433236-4	chr17	28433134	28433334	+	938.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010220, intron 3 of 10)	B4A|SINE|B4	52915.0	NM_010220	14229.0	Mm.276405	NM_010220	ENSMUSG00000024222	Fkbp5	D17Ertd592e|Dit1|FKBP-5|FKBP51	FK506 binding protein 5	protein-coding	3.4531134721074	3.30800141790667	2.74435405642709	3.01333156632222	3.4202233014903	3.3318115866532	2.89762820186237	3.64514750693053	0.318653873851962	0.58950638219284	0.968907675192219
Merged-chr17-80064379-2	chr17	80064279	80064479	+	561.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER21A|LTR|ERV1	-2111.0	NM_144802	72692.0	Mm.64579	NM_144802	ENSMUSG00000024095	Hnrnpll	2510028H02Rik|2810036L13Rik|AI256697|AI852082|Hnrpll	heterogeneous nuclear ribonucleoprotein L-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127585221-2	chr10	127585121	127585321	+	877.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 15 of 88)	intron (NM_008512, intron 15 of 88)	35927.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	-0.248537362314019	-0.484004453295318	-0.323478140483726	-0.489763325581789	-0.358936836844643	-0.483267163630017	-0.486546029193636	0.0119616161640287	0.815060182256655	0.741160489651108	1
Merged-chr10-127615235-2	chr10	127615114	127615314	+	613.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 1 of 88)	intron (NM_008512, intron 1 of 88)	5934.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-101936368-2	chr5	101936268	101936468	+	558.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 14 of 66)	intron (NM_172882, intron 14 of 66)	133553.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-69925448-2	chr8	69925348	69925548	+	657.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286450, intron 3 of 12)	intron (NM_001286450, intron 3 of 12)	-22890.0	NM_023312	67184.0	Mm.21162	NM_023312	ENSMUSG00000036199	Ndufa13	2700054G14Rik|AU022060|CDA016|CGI-39|GRIM-19|Grim19	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 13	protein-coding	0.7796782891785	0.335634150475648	0.329103533267772	0.847017049967372	0.789863455810313	0.337106788872536	0.330543593231597	0.853958768946888	0.0348087015660768	0.98532658120847	1
Merged-chr11-101065629-2	chr11	101065529	101065729	+	878.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-4465.0	NM_013792	27419.0	Mm.95452	NM_013792	ENSMUSG00000001751	Naglu	-	alpha-N-acetylglucosaminidase (Sanfilippo disease IIIB)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-87362434-3	chr3	87362356	87362556	+	802.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009690, intron 2 of 5)	Lx8|LINE|L1	4575.0	NM_009690	11801.0	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	1.54499180794474	0.852889164926393	0.833458723886978	2.09835181961189	1.91882988194426	0.857186034453987	0.83779768784528	1.95133927651707	0.167643138936293	0.908428208738394	0.998431161219273
Merged-chr15-38374897-3	chr15	38374803	38375003	+	768.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74192.0	NM_001289471	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-12232752-2	chr18	12232629	12232829	+	796.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_008720, intron 1 of 24)	RMER1C|Other|Other	3657.0	NM_008720	18145.0	Mm.3484	NM_008720	ENSMUSG00000024413	Npc1	A430089E03Rik|C85354|D18Ertd139e|D18Ertd723e|lcsd|nmf164|spm	NPC intracellular cholesterol transporter 1	protein-coding	0.856103363538673	0.757472535552673	0.96532548783198	0.389570477543668	0.38166114980995	0.404021907397743	0.976691518845829	0.557916928637069	-0.893083281253752	0.6092759358129	1
Merged-chr2-6479779-2	chr2	6479679	6479879	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	127043.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-54926008-2	chr14	54925911	54926111	+	752.666626	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010112, exon 1 of 6)	5' UTR (NM_010112, exon 1 of 6)	777.0	NM_010112	13644.0	Mm.236438	NM_010112	ENSMUSG00000022203	Efs	-	embryonal Fyn-associated substrate	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-59438094-4	chr2	59438006	59438206	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46547.0	NM_029723	76747.0	Mm.275769	NM_029723	ENSMUSG00000026989	Dapl1	2310032F03Rik|EEDA	death associated protein-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-98822469-2	chr12	98822369	98822569	+	628.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081191, intron 27 of 43)	B2_Mm1t|SINE|B2	51447.0	NM_001160108	75553.0	Mm.25549	NM_029334	ENSMUSG00000021012	Zc3h14	1010001P15Rik|1700016A15Rik|2700069A02Rik|AU014748	zinc finger CCCH type containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28736780-2	chr17	28736680	28736880	+	912.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001168508, intron 8 of 11)	intron (NM_001168508, intron 8 of 11)	-32537.0	NM_011950	26415.0	Mm.27970	NM_011950	ENSMUSG00000004864	Mapk13	SAPK4|Serk4	mitogen-activated protein kinase 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-84443552-4	chr10	84443450	84443650	+	898.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3079.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-74394299-2	chr1	74394199	74394399	+	845.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029743)	promoter-TSS (NR_029743)	-11.0	NR_029743	387219.0		NR_029743	ENSMUSG00000065468	Mir26b	Mirn26b|mir-26b|mmu-mir-26b	microRNA 26b	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120938970-4	chr11	120938844	120939044	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6072.0	NM_027745	71276.0	Mm.275751	NM_027745	ENSMUSG00000048445	Ccdc57	4933434G05Rik	coiled-coil domain containing 57	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-53385762-2	chr9	53385662	53385862	+	796.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_212445, intron 1 of 7)	RLTR28|LTR|ERVL	1739.0	NM_212445	68304.0	Mm.427519	NM_212445	ENSMUSG00000034487	Kdelc2	2010004J24Rik|4833410J10Rik|AW549401	KDEL (Lys-Asp-Glu-Leu) containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-44313827-3	chr2	44313713	44313913	+	970.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301831, intron 12 of 14)	intron (NM_001301831, intron 12 of 14)	-248489.0	NR_040622	320872.0	Mm.445023	NR_040622	ENSMUSG00000085089	Arhgap15os	A430092G05Rik	Rho GTPase activating protein 15, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126596091-3	chr7	126595966	126596166	+	957.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1156.0	NM_145636	246779.0	Mm.222632	NM_145636	ENSMUSG00000044701	Il27	IL-27|IL-27p28|Il30|p28	interleukin 27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-8994131-2	chr15	8994031	8994231	+	868.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198024, intron 1 of 13)	Lx7|LINE|L1	26182.0	NM_198024	223332.0	Mm.321371	NM_198024	ENSMUSG00000048424	Ranbp3l	C130037N17Rik	RAN binding protein 3-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81413073-2	chr10	81412973	81413173	+	967.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026756, intron 2 of 8)	intron (NM_026756, intron 2 of 8)	3224.0	NR_106141	102465778.0		NR_106141	ENSMUSG00000105379	Mir1191b	mmu-mir-1191b	microRNA 1191b	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-26135426-4	chr11	26135325	26135525	+	900.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027973, intron 1 of 5)	intron (NR_027973, intron 1 of 5)	-66815.0	NR_105791	102466154.0		NR_105791	ENSMUSG00000099015	Mir6372	Gm27358|mmu-mir-6372	microRNA 6372	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-13781663-2	chr16	13781563	13781763	+	810.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039521, intron 1 of 17)	intron (NM_001039521, intron 1 of 17)	964.0	NM_001039521	106298.0	Mm.288606	NM_001039521	ENSMUSG00000022682	Rrn3	AL023001|E130302O19Rik|R75565|TIF-1A|Tif1a	RRN3 RNA polymerase I transcription factor homolog (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-24389645-4	chr7	24389531	24389731	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9997.0	NM_028047	71997.0	Mm.150977	NM_028047	ENSMUSG00000002210	Smg9	1500002O20Rik|AI429693|N28092	smg-9 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	6.06764702054196	6.21882293184589	5.84669383698251	6.46319646073215	5.26402939662799	5.28591849437907	5.16498973186584	5.0200743046303	-1.09979305711697	2.11314857203685e-05	0.000850790488835508
Merged-chr2-156181518-4	chr2	156181427	156181627	+	996.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	-1289.0	NM_133242	170791.0	Mm.392436	NM_133242	ENSMUSG00000027620	Rbm39	1500012C14Rik|2310040E03Rik|B330012G18Rik|C79248|R75070|Rnpc2|caper	RNA binding motif protein 39	protein-coding	1.75600660868449	2.20692110287723	1.88112235499638	1.83495172693182	2.18221161163914	2.09637846557674	2.35429740526779	1.84309049749822	0.577914344880216	0.526258159107779	0.94877971795044
Merged-chr4-155668701-2	chr4	155668601	155668801	+	914.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001256107, exon 1 of 20)	5' UTR (NM_001256107, exon 1 of 20)	553.0	NM_001256108	76580.0	Mm.235738	NM_145124	ENSMUSG00000029060	Mib2	2210008I11Rik|Zzank1|skd	mindbomb E3 ubiquitin protein ligase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135471230-1	chr5	135471130	135471330	+	544.0	f1_c57bl6.idr	intron (NM_146001, intron 1 of 30)	intron (NM_146001, intron 1 of 30)	73892.0	NM_146001	215114.0	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-18014390-4	chr5	18014279	18014479	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081143, intron 5 of 7)	intron (NM_001081143, intron 5 of 7)	51809.0	NM_001081143	242851.0	Mm.332230	NM_001081143	ENSMUSG00000028777	Gnat3	Ggust|Gtn	guanine nucleotide binding protein, alpha transducing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-113795243-4	chr13	113795109	113795309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172595, intron 1 of 4)	intron (NM_172595, intron 1 of 4)	701.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-126678193-2	chr4	126678093	126678293	+	839.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011970, intron 1 of 5)	intron (NM_011970, intron 1 of 5)	550.0	NM_011970	26445.0	Mm.22233	NM_011970	ENSMUSG00000028837	Psmb2	AU045357|AW108089|C7-I|D4Wsu33e|HC7-I	proteasome (prosome, macropain) subunit, beta type 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100709360-1	chr11	100709260	100709460	+	752.0	f1_c57bl6.idr	intron (NM_001038010, intron 7 of 17)	intron (NM_001038010, intron 7 of 17)	3107.0	NM_001038010	14534.0	Mm.218837	NM_020004	ENSMUSG00000020918	Kat2a	1110051E14Rik|AW212720|Gcn5|Gcn5l2|mmGCN5	K(lysine) acetyltransferase 2A	protein-coding	1.62158300537352	1.567160644864	0.894463324688415	2.32684905581932	1.06421971676506	1.18609513152958	2.19917900120428	0.880309064719085	-0.705332253149162	0.583137656632494	0.966599221005409
Merged-chr15-89073345-2	chr15	89073245	89073445	+	659.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_040417, intron 2 of 3)	intron (NR_040417, intron 2 of 3)	2509.0	NR_040417	69120.0	Mm.276391	NR_040417	ENSMUSG00000087331	1810021B22Rik	-	RIKEN cDNA 1810021B22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-34607483-2	chr19	34607383	34607583	+	793.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001005858)	promoter-TSS (NM_001005858)	-474.0	NM_001005858	667370.0	Mm.271850	NM_001005858	ENSMUSG00000062488	Ifit3b	I830012O16Rik	interferon-induced protein with tetratricopeptide repeats 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141553668-3	chr4	141553539	141553739	+	619.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	7477.0	NR_030695	320456.0	Mm.32859	NM_177163		B330016D10Rik	-	RIKEN cDNA B330016D10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-30008702-4	chr16	30008612	30008812	+	998.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033631)	promoter-TSS (NR_033631)	45.0	NR_033631	100043102.0	Mm.30797	NR_033631	ENSMUSG00000097184	4632428C04Rik	Gm4231	RIKEN cDNA 4632428C04 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-67843946-2	chr5	67843846	67844046	+	974.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038999, intron 1 of 36)	intron (NM_001038999, intron 1 of 36)	3485.0	NM_009727	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-75017517-4	chr14	75017386	75017586	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198642, intron 1 of 13)	intron (NM_198642, intron 1 of 13)	1459.0	NM_198642	271221.0	Mm.320280	NM_198642	ENSMUSG00000034959	Rubcnl	5031414D18Rik|Gm744|Gm911|Kiaa0226l	RUN and cysteine rich domain containing beclin 1 interacting protein like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166186189-2	chr2	166186089	166186289	+	919.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	-30506.0	NM_028072	72043.0	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65031600-4	chr9	65031489	65031689	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028906)	promoter-TSS (NM_028906)	-869.0	NM_028906	74388.0	Mm.202749	NM_028906	ENSMUSG00000032393	Dpp8	2310004I03Rik|4932434F09Rik|AI666706|DPP VIII	dipeptidylpeptidase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-121316020-3	chr10	121315912	121316112	+	737.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361015, intron 2 of 12)	intron (NM_001361015, intron 2 of 12)	-4616.0	NM_029057	74694.0	Mm.233833	NM_029057	ENSMUSG00000052302	Tbc1d30	4930505D03Rik|9530013E20Rik	TBC1 domain family, member 30	protein-coding	2.94880821095398	2.60149769132018	1.817660652342	2.67410954407359	2.74324571201029	3.15874579464727	2.3935357420214	3.11800368159792	0.594367039119258	0.425140294129558	0.901293602726532
Merged-chr16-36627036-4	chr16	36626943	36627143	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019388, intron 2 of 7)	intron (NM_019388, intron 2 of 7)	39034.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-95641333-4	chr9	95641233	95641433	+	971.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029620, intron 2 of 8)	intron (NM_029620, intron 2 of 8)	3705.0	NM_029620	76477.0	Mm.46016	NM_029620	ENSMUSG00000015354	Pcolce2	2400001O18Rik|Pcpe2	procollagen C-endopeptidase enhancer 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35186165-7	chr17	35186061	35186261	+	990.4285890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010734, intron 3 of 3)	intron (NM_010734, intron 3 of 3)	2279.0	NM_010734	16988.0	Mm.19379	NM_010734	ENSMUSG00000073412	Lst1	B144	leukocyte specific transcript 1	protein-coding	3.73905350192202	3.4205982412619	4.23888042063315	2.58570931180132	3.91977473158836	3.94598952173517	3.59917482749099	2.75204573535036	0.00856360484099681	0.988458681528923	0.998431161219273
Merged-chr2-34779584-7	chr2	34779500	34779700	+	958.657166	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145522, intron 7 of 7)	intron (NM_145522, intron 7 of 7)	7510.0	NM_022310	14828.0	Mm.330160	NM_022310	ENSMUSG00000026864	Hspa5	AL022860|AU019543|Bip|D2Wsu141e|D2Wsu17e|Grp78|Hsce70|SEZ-7|Sez7|baffled|mBiP	heat shock protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139811686-2	chr5	139811586	139811786	+	616.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161548, intron 2 of 8)	intron (NM_001161548, intron 2 of 8)	1557.0	NM_144914	231832.0	Mm.482655	NM_144914	ENSMUSG00000036687	Tmem184a	Sdmg1	transmembrane protein 184a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-121696975-2	chr9	121696875	121697075	+	648.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164562, intron 1 of 6)	intron (NM_001164562, intron 1 of 6)	8054.0	NM_178677	215474.0	Mm.31421	NM_178677	ENSMUSG00000061536	Sec22c	4932412K21|5930407I15Rik|C530046H07|Sec22l3	SEC22 homolog C, vesicle trafficking protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122405263-4	chr8	122405155	122405355	+	896.275024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029993, intron 9 of 18)	intron (NM_001029993, intron 9 of 18)	-16765.0	NM_145834	234836.0	Mm.222808	NM_145834	ENSMUSG00000046108	Il17c	IL-17C	interleukin 17C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-50154976-3	chr11	50154895	50155095	+	642.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029745, intron 10 of 20)	intron (NM_029745, intron 10 of 20)	-19856.0	NM_026543	68067.0	Mm.40828	NM_026543	ENSMUSG00000020381	Mrnip	2900016G09Rik|3010026O09Rik|AI851514|AW475975	MRN complex interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-83337495-3	chr10	83337402	83337602	+	819.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177388, intron 1 of 10)	CpG	315.0	NM_177388	338365.0	Mm.67073	NM_177388	ENSMUSG00000034591	Slc41a2	A230035L05Rik|SLC41A1-L1	solute carrier family 41, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-56422503-4	chr13	56422412	56422612	+	788.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15843.0	NM_177809	328258.0	Mm.482177	NM_177809	ENSMUSG00000021509	Slc25a48	AU042651|E230025K15	solute carrier family 25, member 48	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-64096588-2	chr15	64096488	64096688	+	609.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 26 of 28)	intron (NM_001276461, intron 26 of 28)	-36140.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0.0804677365068734	0.0978023981171764	0.655122831125119	0.250572789703484	0.728107025076189	0.0990825074469388	0.42246429317773	0.0885078331848014	0.481394751314972	0.815437187083501	1
Merged-chr4-59865675-2	chr4	59865575	59865775	+	639.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172468, intron 2 of 8)	B1_Mur4|SINE|Alu	49381.0	NM_021053	30936.0	Mm.284433	NM_021053	ENSMUSG00000028386	Slc46a2	5430429N04Rik|Ly110|TSO-1C12|Tscot	solute carrier family 46, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-69439970-2	chr16	69439870	69440070	+	653.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	360411.0	NR_130991	78110.0	Mm.211406	NR_130991	ENSMUSG00000107073	4930428D20Rik	Gm43265	RIKEN cDNA 4930428D20 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107709950-4	chr9	107709840	107710040	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011349, intron 1 of 17)	CpG	535.0	NM_011349	20350.0	Mm.12903	NM_011349	ENSMUSG00000034684	Sema3f	Sema4|Semak	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-119616727-2	chr13	119616627	119616827	+	975.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7092.0	NM_020279	56838.0	Mm.143745	NM_020279	ENSMUSG00000074715	Ccl28	CCK1|MEC|Scya28	chemokine (C-C motif) ligand 28	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-92940807-3	chr13	92940695	92940895	+	771.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	96008.0	NM_001162945	382793.0	Mm.296770	NM_001162945	ENSMUSG00000021704	Mtx3	4930470O13Rik|AA409304|AI853833|AU067765|EG624619|Gm1194|Gm6514	metaxin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-36532167-4	chr3	36532082	36532282	+	885.087524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10737.0	NR_040411	100503068.0	Mm.389423	NR_040411	ENSMUSG00000085007	Gm11549	-	predicted gene 11549	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-8862483-4	chr16	8862374	8862574	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32374.0	NM_001081400	69053.0	Mm.390868	NM_001081400	ENSMUSG00000022507	1810013L24Rik	1110017P05Rik|3010002C02Rik|AA792997|AW124177|Gm19906|R74903	RIKEN cDNA 1810013L24 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-180249678-2	chr2	180249578	180249778	+	625.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7701.0	NM_025587	66481.0	Mm.289669	NM_025587	ENSMUSG00000039001	Rps21	1810049N11Rik|2410030A14Rik	ribosomal protein S21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-146209192-4	chr6	146209080	146209280	+	907.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019923, intron 45 of 56)	intron (NM_019923, intron 45 of 56)	275058.0	NM_010656	16651.0	Mm.49689	NM_010656	ENSMUSG00000030255	Sspn	Krag	sarcospan	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69132870-1	chr11	69132770	69132970	+	590.0	f1_balb.idr	intron (NM_011786, intron 6 of 14)	intron (NM_011786, intron 6 of 14)	6493.0	NM_011786	23801.0	Mm.41989	NM_011786	ENSMUSG00000020892	Aloxe3	e-LOX-3|eLOX-3	arachidonate lipoxygenase 3	protein-coding	0.148179160521225	0.174014505101101	1.02101832429989	0.349914255119319	0.321045826920929	1.10213498869101	0.16750865135325	0.16028250666551	0.148779497766652	0.938970193996525	1
Merged-chr17-27029282-2	chr17	27029182	27029382	+	637.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007523)	promoter-TSS (NM_007523)	23.0	NM_027544	70772.0	Mm.440437	NM_027544	ENSMUSG00000048731	Ggnbp1	0610031G08Rik|mdf	gametogenetin binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85192854-4	chr12	85192761	85192961	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15548.0	NM_008827	18654.0	Mm.4809	NM_008827	ENSMUSG00000004791	Pgf	AI854365|PIGF|Plgf	placental growth factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-18048209-2	chr16	18048109	18048309	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4651.0	NM_010047	13353.0	Mm.27155	NM_010047	ENSMUSG00000003531	Dgcr6	-	DiGeorge syndrome critical region gene 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-122599898-4	chr6	122599816	122600016	+	796.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001134391, intron 2 of 7)	RSINE1|SINE|B4	2528.0	NM_031159	11810.0	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	2.32725390753845	1.25295030549924	2.53110090403149	1.43638693297388	2.34727952450892	2.0814746259533	2.46284454582321	1.44267457324581	0.303187016195513	0.770042581750124	0.998431161219273
Merged-chr18-23806754-2	chr18	23806654	23806854	+	677.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153058, intron 1 of 6)	B3|SINE|B2	2784.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128374125-4	chr2	128374100	128374300	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028591, intron 1 of 1)	intron (NR_028591, intron 1 of 1)	55151.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	4.85824524714523	5.73315310308432	5.00377359755817	4.66393564019597	4.75529579855265	5.41355908282102	5.77926815818136	5.67949954026361	0.390257367610117	0.256832532399792	0.755701651669989
Merged-chr3-95655751-4	chr3	95655666	95655866	+	963.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2955.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-64306296-4	chr13	64306186	64306386	+	958.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025370, intron 4 of 5)	intron (NM_025370, intron 4 of 5)	6424.0	NM_025370	66129.0	Mm.491110	NM_025370	ENSMUSG00000021482	Aaed1	1110018J18Rik|AI849003	AhpC/TSA antioxidant enzyme domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-39288116-1	chr4	39288016	39288216	+	551.0	f1_balb.idr	Intergenic	L1_Mur3|LINE|L1	-162177.0	NM_001081095	75471.0	Mm.23522	NM_001081095	ENSMUSG00000028287	1700009N14Rik	AI429145	RIKEN cDNA 1700009N14 gene	protein-coding	0.15919755065017	0.344099028508228	0.168379873290061	0.723408713098196	0.160041671864787	0.728818844865528	0.169378370907738	0.439420117300059	0.17819943093373	0.930418637466341	1
Merged-chr9-113719283-2	chr9	113719183	113719383	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11024.0	NM_011052	18571.0	Mm.29816	NM_011052	ENSMUSG00000032504	Pdcd6ip	AI480591|AW544830|Aip1|Alix|C76364|Eig2|mKIAA1375	programmed cell death 6 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-180256421-3	chr2	180256309	180256509	+	954.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025587)	promoter-TSS (NM_025587)	-970.0	NM_025587	66481.0	Mm.289669	NM_025587	ENSMUSG00000039001	Rps21	1810049N11Rik|2410030A14Rik	ribosomal protein S21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-29985659-1	chr13	29985559	29985759	+	549.0	f0_balb.idr	exon (NM_010093, exon 1 of 7)	exon (NM_010093, exon 1 of 7)	404.0	NM_010093	13557.0	Mm.268356	NM_010093	ENSMUSG00000016477	E2f3	E2F3b|E2f3a	E2F transcription factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-45694384-2	chr13	45694284	45694484	+	556.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199304, intron 5 of 6)	RSINE1|SINE|B4	186940.0	NM_025508	66355.0	Mm.290802	NM_025508	ENSMUSG00000000253	Gmpr	2310004P21Rik|AV028449|GMPR 1	guanosine monophosphate reductase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-88868013-4	chr15	88867931	88868131	+	952.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	5837.0	NM_145478	223775.0	Mm.400129	NM_145478	ENSMUSG00000035828	Pim3	BC026639|Kid1	proviral integration site 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-123498099-4	chr9	123498016	123498216	+	775.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013860, intron 1 of 7)	intron (NM_013860, intron 1 of 7)	19415.0	NM_013860	29806.0	Mm.10987	NM_013860	ENSMUSG00000025239	Limd1	AW822033|D9Ertd192e	LIM domains containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-3427287-3	chr6	3427182	3427382	+	930.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27711.0	NM_010156	209086.0	Mm.196013	NM_010156	ENSMUSG00000047735	Samd9l	AA175286|ESTM25|mKIAA2005	sterile alpha motif domain containing 9-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-25578382-3	chr9	25578269	25578469	+	889.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 3 of 7)	intron (NM_026189, intron 3 of 7)	96772.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-12006202-6	chr19	12006077	12006277	+	996.638916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30563.0	NM_146680	258675.0	Mm.271517	NM_146680	ENSMUSG00000067529	Olfr1423	MOR239-3	olfactory receptor 1423	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-76964340-1	chr12	76964240	76964440	+	543.0	f1_balb.idr	Intergenic	Intergenic	-2092.0	NM_001146176	17187.0	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-75751244-4	chr14	75751144	75751344	+	871.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177381, intron 1 of 22)	intron (NM_177381, intron 1 of 22)	3249.0	NM_177381	338337.0	Mm.86507	NM_177381	ENSMUSG00000034893	Cog3	E430004N23	component of oligomeric golgi complex 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19320149-4	chr7	19320039	19320239	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-10094.0	NM_001347586	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140617956-4	chr5	140617836	140618036	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10595.0	NM_008494	16848.0	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-55203783-4	chr6	55203678	55203878	+	947.94165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142781, intron 1 of 17)	intron (NM_001142781, intron 1 of 17)	395.0	NM_001142781	330323.0	Mm.268997	NM_177883	ENSMUSG00000038022	Mindy4	C330043M08Rik|Fam188b|Gm1406	MINDY lysine 48 deubiquitinase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-77352922-2	chr10	77352822	77353022	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001024838, intron 2 of 11)	intron (NM_001024838, intron 2 of 11)	65351.0	NM_130895	110532.0	Mm.276815	NM_130895	ENSMUSG00000020262	Adarb1	1700057H01Rik|AW124433|AW558573|Adar2|BB220382|D10Bwg0447e|Red1	adenosine deaminase, RNA-specific, B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-110667409-2	chr14	110667309	110667509	+	940.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	87740.0	NM_175499	239250.0	Mm.49728	NM_175499	ENSMUSG00000045871	Slitrk6	4832410J21Rik|Sltk6	SLIT and NTRK-like family, member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-121333157-4	chr7	121333042	121333242	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-59154.0	NM_001081327	195646.0	Mm.247449	NM_177575	ENSMUSG00000046321	Hs3st2	6430516N12Rik|A830061E14Rik|AW491345	heparan sulfate (glucosamine) 3-O-sulfotransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-100568259-4	chr12	100568162	100568362	+	886.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153587, intron 14 of 17)	intron (NM_153587, intron 14 of 17)	-47440.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91606106-2	chr16	91606006	91606206	+	836.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8426.0	NM_030018	77975.0	Mm.290341	NM_030018	ENSMUSG00000022964	Tmem50b	AU015466|AU019872|B230114J08Rik	transmembrane protein 50B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-153962228-2	chr3	153962128	153962328	+	998.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11208.0	NM_001081263	242259.0	Mm.239962	NM_001081263	ENSMUSG00000028360	Slc44a5	AA117069|Gm422	solute carrier family 44, member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-90373627-3	chr3	90373521	90373721	+	941.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16317.0	NM_001316688	26568.0	Mm.45519	NM_011988	ENSMUSG00000027932	Slc27a3	Acsvl3|FATP-3|FATP3|Vlcs-3	solute carrier family 27 (fatty acid transporter), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-7215652-2	chr19	7215552	7215752	+	737.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_007750, intron 1 of 1)	intron (NM_007750, intron 1 of 1)	1964.0	NM_007750	12868.0	Mm.14022	NM_007750	ENSMUSG00000035885	Cox8a	COX8L	cytochrome c oxidase subunit VIIIa	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-67249185-4	chr18	67249081	67249281	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-3351.0	NM_001357518	225651.0	Mm.235792	NM_172630	ENSMUSG00000062526	Mppe1	Pgap5	metallophosphoesterase 1	protein-coding	2.58396781052156	2.4494547920986	3.1454422627109	2.84965470257656	2.72068269562989	3.82815399783567	3.93254186767795	3.24803256955626	1.22086769225293	0.0566423937364864	0.351514882784671
Merged-chr1-39367837-4	chr1	39367780	39367980	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252218)	promoter-TSS (NM_001252218)	29.0	NM_001252218	114641.0	Mm.379302	NM_053257	ENSMUSG00000073702	Rpl31	Dts	ribosomal protein L31	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-115908759-1	chr6	115908659	115908859	+	620.0	f0_balb.idr	intron (NM_001167763, intron 17 of 28)	intron (NM_001167763, intron 17 of 28)	-23168.0	NM_145383	212541.0	Mm.2965	NM_145383	ENSMUSG00000030324	Rho	Noerg1|Opn2|Ops|RP4	rhodopsin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135687943-1	chr5	135687843	135688043	+	541.0	f1_balb.idr	Intergenic	B1_Mur1|SINE|Alu	-1202.0	NM_008898	18984.0	Mm.3863	NM_008898	ENSMUSG00000005514	Por	4933424M13Rik|CPR|CYPOR|P450R	P450 (cytochrome) oxidoreductase	protein-coding	0.94528265285971	0.47694453159101	0.468615780366373	0.905423561698069	0.956075193681404	1.23417389813044	0.470456705984637	0.637588842472115	0.735186206906176	0.660818469276737	1
Merged-chr5-125386006-2	chr5	125385906	125386106	+	914.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_019639)	TTS (NM_019639)	4011.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-34444459-3	chr15	34444380	34444580	+	932.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1204.0	NM_001163485	19946.0	Mm.358632	NM_009083	ENSMUSG00000058600	Rpl30	-	ribosomal protein L30	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-9140561-3	chr19	9140485	9140685	+	852.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR17|LTR|ERVK	-5019.0	NM_025610	66514.0	Mm.272847	NM_025610	ENSMUSG00000024654	Asrgl1	2410004D18Rik|ALP|ALP1|AU040643|AW060375	asparaginase like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117669591-2	chr10	117669491	117669691	+	893.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027468, intron 4 of 8)	intron (NM_027468, intron 4 of 8)	40091.0	NM_027468	70574.0	Mm.339332	NM_027468	ENSMUSG00000020183	Cpm	1110060I01Rik|5730456K23Rik|AA589379|E030045M14Rik	carboxypeptidase M	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-61679608-2	chr14	61679508	61679708	+	799.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_028264, intron 1 of 6)	intron (NR_028264, intron 1 of 6)	2765.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-4554958-4	chr2	4554847	4555047	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 11 of 23)	(TTTTTG)n|Simple_repeat|Simple_repeat	-4807.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-102245300-4	chr11	102245183	102245383	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3599.0	NM_153544	217216.0	Mm.247335	NM_153544	ENSMUSG00000034773	BC030867	-	cDNA sequence BC030867	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-69458157-4	chr12	69458039	69458239	+	892.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17411.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-122985677-4	chr10	122985473	122985673	+	989.535706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_029527)	TTS (NR_029527)	151.0	NR_029527	387251.0		NR_029527	ENSMUSG00000065406	Mirlet7i	Mirnlet7i|let-7i|mmu-let-7i	microRNA let7i	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-146181366-2	chr3	146181266	146181466	+	624.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001005846, intron 8 of 13)	intron (NM_001005846, intron 8 of 13)	31192.0	NM_001005846	68279.0	Mm.116862	NM_026656	ENSMUSG00000011008	Mcoln2	3300002C04Rik|AI549968|C86638|TRPML2	mucolipin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25079705-2	chr7	25079605	25079805	+	643.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001168506, exon 3 of 3)	exon (NM_001168506, exon 3 of 3)	2898.0	NM_175477	232976.0	Mm.41568	NM_175477	ENSMUSG00000045252	Zfp574	A630056B21Rik|Znf574	zinc finger protein 574	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-26609192-2	chr15	26609092	26609292	+	905.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_176959, intron 2 of 3)	intron (NM_176959, intron 2 of 3)	286372.0	NM_176959	448987.0	Mm.253378	NM_176959	ENSMUSG00000043556	Fbxl7	AL023057|D230018M15Rik|FBL7|Fbl6	F-box and leucine-rich repeat protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-31445930-4	chr10	31445808	31446008	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009413)	promoter-TSS (NM_009413)	50.0	NM_001359365	21987.0	Mm.439966	NM_009413	ENSMUSG00000000296	Tpd52l1	D53	tumor protein D52-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-80979584-3	chr15	80979480	80979680	+	661.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357669, intron 1 of 20)	intron (NM_001357669, intron 1 of 20)	1815.0	NM_134091	105835.0	Mm.274943	NM_134091	ENSMUSG00000042303	Sgsm3	1810012I01Rik|AI428557|BB175482|Cip85|R75178|RUSC3|Rutbc3	small G protein signaling modulator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-145600431-2	chr6	145600331	145600531	+	724.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-15532.0	NM_009449	22147.0	Mm.270295	NM_009449	ENSMUSG00000067338	Tuba3b	M[a]7|Tuba7	tubulin, alpha 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-12475566-4	chr19	12475462	12475662	+	988.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172442, intron 7 of 8)	intron (NM_172442, intron 7 of 8)	14783.0	NM_010821	17476.0	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	5.28868478471516	4.37464486533313	4.4050872111348	5.18465566874094	5.09778982654893	2.99600429890911	4.200106335304	3.78521393074301	-0.792534000661779	0.101417053063519	0.495198369601582
Merged-chr2-25582588-4	chr2	25582476	25582676	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001024616)	TTS (NM_001024616)	-2477.0	NM_001005424	381353.0	Mm.379511	NM_001005424	ENSMUSG00000029419	Gm996	Ajm1	predicted gene 996	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-144246657-4	chr1	144246576	144246776	+	921.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015811, intron 3 of 4)	intron (NM_015811, intron 3 of 4)	2428.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117149502-2	chr10	117149402	117149602	+	572.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1028.0	NM_177798	327826.0	Mm.135965	NM_177798	ENSMUSG00000020170	Frs2	4732458E18|C330018A15Rik|Frs2alpha|SNT1	fibroblast growth factor receptor substrate 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101176582-2	chr15	101176482	101176682	+	699.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007395, intron 1 of 8)	intron (NM_007395, intron 1 of 8)	2510.0	NM_007395	11479.0	Mm.308467	NM_007395	ENSMUSG00000000532	Acvr1b	6820432J04|ALK-4|ActR-IB|ActRIB|Acvrlk4|Alk4|SKR2	activin A receptor, type 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-77848583-3	chr14	77848484	77848684	+	739.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025384, intron 3 of 5)	ORR1B2|LTR|ERVL-MaLR	26333.0	NM_025384	66148.0	Mm.248046	NM_025384	ENSMUSG00000022013	Dnajc15	1110003P16Rik|Dnajd1	DnaJ heat shock protein family (Hsp40) member C15	protein-coding	2.8710144378988	4.17266599315306	3.35597380007657	4.19359323666885	3.58592132195072	4.3151836549187	3.03601774000403	4.06345705871902	0.107591452951976	0.847146631369932	0.998431161219273
Merged-chr4-153514202-1	chr4	153514102	153514302	+	661.0	f0_balb.idr	Intergenic	Intergenic	-31372.0	NM_001099299	230959.0	Mm.318874	NM_001099299	ENSMUSG00000039546	Ajap1	Gm573	adherens junction associated protein 1	protein-coding	0.490619725402809	0.380029221018945	0.374491594069646	1.01967534993648	0.494651581239938	0.84232175733355	0.375708715545741	0.866285365218346	0.340283527050458	0.848905547347232	1
Merged-chr19-21564258-4	chr19	21564146	21564346	+	842.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	88545.0	NM_025423	66206.0	Mm.272430	NM_025423	ENSMUSG00000035171	1110059E24Rik	-	RIKEN cDNA 1110059E24 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-26437775-4	chr14	26437674	26437874	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310445, intron 16 of 22)	intron (NM_001310445, intron 16 of 22)	80227.0	NR_038005	71106.0	Mm.158564	NR_038005	ENSMUSG00000021874	4933413J09Rik	GCSE	RIKEN cDNA 4933413J09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-77443298-4	chr8	77443232	77443432	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030113, intron 3 of 22)	intron (NM_030113, intron 3 of 22)	-73724.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-72970241-3	chr9	72970157	72970357	+	731.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163725, intron 5 of 6)	intron (NM_001163725, intron 5 of 6)	11472.0	NM_001163725	67685.0	Mm.31817	NM_026314	ENSMUSG00000092192	Dyx1c1	1700010I24Rik|Dnaaf4|EKN1|b2b811.1Clo|b2b811Clo	dyslexia susceptibility 1 candidate 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-67830928-2	chr9	67830895	67831095	+	732.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_001163143, exon 2 of 2)	exon (NM_001163143, exon 2 of 2)	1335.0	NM_001163143	244911.0	Mm.325849	NM_001163143	ENSMUSG00000047990	C2cd4a	EG244911|Fam148a	C2 calcium-dependent domain containing 4A	protein-coding	-0.278690017755884	-0.265520275341051	-0.269842965599231	-0.273172660492679	-0.0109151086790123	0.349360699553224	-0.26889024458099	0.150500186812959	3.69644442058299	0.119626512141448	1
Merged-chr3-9001627-7	chr3	9001580	9001780	+	946.1904910000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	2524.0	NM_001357073	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	1.73988932098547	0.745122152786894	2.0305783755024	0.700965847336267	1.10764412413825	0.75048930589599	2.636327760316	0.704458303733807	0.439938710586623	0.85741040253862	0.998431161219273
Merged-chr5-110968824-4	chr5	110968726	110968926	+	625.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001267622, intron 2 of 22)	MTC|LTR|ERVL-MaLR	-35318.0	NR_030482	735278.0		NR_030482	ENSMUSG00000076163	Mir701	Mirn701|mir-701|mmu-mir-701	microRNA 701	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-120523830-2	chr5	120523730	120523930	+	978.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177595, intron 8 of 13)	G-rich|Low_complexity|Low_complexity	12638.0	NM_001177594	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-66684941-4	chr15	66684849	66685049	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009375, intron 10 of 47)	MTD|LTR|ERVL-MaLR	14179.0	NM_009375	21819.0	Mm.441333	NM_009375	ENSMUSG00000053469	Tg	Tgn|cog	thyroglobulin	protein-coding	4.24466485653836	4.51874493672566	4.85952271824609	4.73983620227075	3.23262732704462	4.17792201046374	4.46138814881792	4.11281282959506	-0.715918638647768	0.0944160170689896	0.475550312581511
Merged-chr15-68428569-3	chr15	68428476	68428676	+	903.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-87287.0	NR_029718	387228.0		NR_029718	ENSMUSG00000065437	Mir30d	Mirn30d|mir-30d|mmu-mir-30d	microRNA 30d	ncRNA	2.2770011641691	0.817965037066395	1.6569695264186	1.34631605503857	1.71149655676377	0.822039025641823	0.803667489317945	1.01251106160772	-1.58481659562963	0.254202830406706	0.751985668675266
Merged-chr19-32223926-4	chr19	32223829	32224029	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 4 of 9)	intron (NM_144792, intron 4 of 9)	-12916.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-21618870-2	chr10	21618770	21618970	+	631.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_027968, intron 2 of 2)	intron (NR_027968, intron 2 of 2)	25725.0	NR_027968	67692.0	Mm.54306	NM_183266	ENSMUSG00000050844	1700020N01Rik	-	RIKEN cDNA 1700020N01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-93499655-4	chr13	93499553	93499753	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_021310, exon 1 of 11)	5' UTR (NM_021310, exon 1 of 11)	155.0	NM_021310	57748.0	Mm.100273	NM_021310	ENSMUSG00000021690	Jmy	-	junction-mediating and regulatory protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-70257323-4	chr10	70257205	70257405	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025807, intron 2 of 5)	intron (NM_025807, intron 2 of 5)	12029.0	NM_025807	66859.0	Mm.19325	NM_025807	ENSMUSG00000037762	Slc16a9	1200003C15Rik|4930425B13Rik|AI552636	solute carrier family 16 (monocarboxylic acid transporters), member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-13036574-2	chr7	13036474	13036674	+	771.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001243968, exon 2 of 6)	exon (NM_001243968, exon 2 of 6)	1053.0	NM_001243968	22192.0	Mm.196580	NM_145578	ENSMUSG00000005575	Ube2m	2510040H03Rik|UBC12|Ubc-rs2	ubiquitin-conjugating enzyme E2M	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-99461795-4	chr10	99461704	99461904	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-147367.0	NR_038019	100504202.0	Mm.403801	NR_038019	ENSMUSG00000111962	Gm20110	-	predicted gene, 20110	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101470970-2	chr11	101470870	101471070	+	667.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_009708, intron 4 of 4)	intron (NM_009708, intron 4 of 4)	2795.0	NM_009708	11858.0	Mm.378883	NM_009708	ENSMUSG00000001313	Rnd2	Arhn|Rohn|rho7	Rho family GTPase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-103133079-4	chr11	103132974	103133174	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027658)	promoter-TSS (NM_027658)	-265.0	NM_001130516	71059.0	Mm.273871	NM_027658	ENSMUSG00000043372	Hexim2	4933402L21Rik	hexamethylene bis-acetamide inducible 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-78861026-4	chr12	78860946	78861146	+	991.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023721, intron 1 of 8)	intron (NM_023721, intron 1 of 8)	592.0	NM_023721	73834.0	Mm.311549	NM_023721	ENSMUSG00000021114	Atp6v1d	1110004P10Rik|Atp6m|VATD|Vma8	ATPase, H+ transporting, lysosomal V1 subunit D	protein-coding	3.52504012824229	3.30723450557419	3.43471037582523	2.57509109973914	2.32195352264997	2.76788289642152	3.53039316365233	2.58884144461707	-0.645750468768832	0.336353027586532	0.836627536200742
Merged-chr11-55433134-3	chr11	55433022	55433222	+	848.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13042.0	NM_001290817	20692.0	Mm.291442	NM_009242	ENSMUSG00000018593	Sparc	BM-40|ON	secreted acidic cysteine rich glycoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-48988188-4	chr2	48988086	48988286	+	813.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029924, intron 1 of 16)	LTR87|LTR|ERVL?	-37952.0	NM_001355296	26428.0	Mm.291059	NM_011958	ENSMUSG00000026761	Orc4	Orc4P|Orc4l|mMmORC4	origin recognition complex, subunit 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-116669280-4	chr6	116669162	116669362	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178045, intron 1 of 10)	MLTR14|LTR|ERV1	4574.0	NM_178045	213391.0	Mm.257931	NM_178045	ENSMUSG00000042129	Rassf4	3830411C14Rik|AD037|AI586137	Ras association (RalGDS/AF-6) domain family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24212464-4	chr17	24212372	24212572	+	962.716675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3085.0	NM_010947	18209.0	Mm.259542	NM_010947	ENSMUSG00000036473	Ntn3	Ntn2l	netrin 3	protein-coding	-0.734697168562934	-1.28094420828655	-1.29131886204401	-1.29984091153697	-1.31008363841169	-1.2786959775384	-1.28897026783925	-1.29831546875223	-2.42902550944018	0.482518537989684	1
Merged-chr10-37144193-2	chr10	37144093	37144293	+	723.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5267.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134068621-4	chr6	134068516	134068716	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 2 of 8)	intron (NM_001303102, intron 2 of 8)	32916.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	4.76159090774315	3.87235395012277	3.5634156078844	4.05077686888882	4.36071495349255	4.26733351883084	4.55744988523578	3.47720421332456	0.0924425718771718	0.845096493744782	0.998431161219273
Merged-chr10-43173794-2	chr10	43173694	43173894	+	604.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_102361)	promoter-TSS (NR_102361)	736.0	NM_175407	109205.0	Mm.153750	NM_175407	ENSMUSG00000038248	Sobp	2900009C16Rik|5330439J01Rik|JXC1|jc	sine oculis binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-6960917-4	chr17	6960817	6961017	+	943.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_147155, intron 1 of 3)	CpG	239.0	NM_147155	380608.0	Mm.371734	NM_147155	ENSMUSG00000052031	Tagap1	2610315E15Rik|AA415005|FKSG15	T cell activation GTPase activating protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140517404-2	chr5	140517304	140517504	+	595.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021528, intron 1 of 1)	intron (NM_021528, intron 1 of 1)	11795.0	NM_021528	59031.0	Mm.28934	NM_021528	ENSMUSG00000036599	Chst12	AI595374|C4S-2|C4ST2	carbohydrate sulfotransferase 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-93184290-1	chr9	93184190	93184390	+	934.0	f0_balb.idr	Intergenic	Intergenic	-178557.0	NR_040756	78349.0	Mm.52612	NR_040756	ENSMUSG00000100294	1700034K08Rik	-	RIKEN cDNA 1700034K08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-21831551-3	chr13	21831504	21831704	+	885.944458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_175657).2	TTS (NM_175657).2	554.0	NM_175657	319161.0	Mm.261664	NM_175657	ENSMUSG00000069305	Hist1h4n	-	histone cluster 1, H4n	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67069163-4	chr10	67069056	67069256	+	980.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178606, intron 1 of 7)	intron (NM_178606, intron 1 of 7)	27832.0	NM_001204915	28193.0	Mm.41272	NM_178606	ENSMUSG00000019873	Reep3	D10Ucla1	receptor accessory protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-93607911-2	chr3	93607811	93608011	+	759.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44775.0	NM_001007222	399673.0	Mm.377260	NM_001007222	ENSMUSG00000103362	Tdpoz2	-	TD and POZ domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124521686-2	chr5	124521586	124521786	+	923.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021430, intron 1 of 6)	intron (NM_021430, intron 1 of 6)	9705.0	NM_021430	75695.0	Mm.41180	NM_021430	ENSMUSG00000029392	Rilpl1	2900002H16Rik|6330559I19Rik|GOSPEL	Rab interacting lysosomal protein-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-29420716-3	chr19	29420598	29420798	+	880.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021396, intron 1 of 5)	intron (NM_021396, intron 1 of 5)	9779.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-140964846-4	chr4	140964750	140964950	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355515, intron 1 of 7)	B4A|SINE|B4	3579.0	NM_023374	67680.0	Mm.246965	NM_023374	ENSMUSG00000009863	Sdhb	0710008N11Rik	succinate dehydrogenase complex, subunit B, iron sulfur (Ip)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-60537311-1	chr11	60537211	60537411	+	1000.0	f0_c57.idr	promoter-TSS (NM_172943)	promoter-TSS (NM_172943)	-372.0	NM_172943	268420.0	Mm.262056	NM_172943	ENSMUSG00000042650	Alkbh5	AW050020|AW215868|Abh5|E130207K11|Ofoxd	alkB homolog 5, RNA demethylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-25472114-2	chr14	25472014	25472214	+	925.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	ID_B1|SINE|B4	12929.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-9916136-4	chr19	9916076	9916276	+	873.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16643.0	NM_016692	16319.0	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	2.98261880983923	2.50024243399008	2.88920678843723	2.90095999244436	3.00619336301415	2.51803647578655	2.91103946066336	2.36501448550302	-0.198575376576249	0.775079442271323	0.998431161219273
Merged-chr9-120113976-2	chr9	120113876	120114076	+	830.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144793, intron 1 of 6)	intron (NM_144793, intron 1 of 6)	3577.0	NM_144793	208638.0	Mm.236656	NM_144793	ENSMUSG00000032519	Slc25a38	AV019094|BC010801|appoptosin	solute carrier family 25, member 38	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-58382723-2	chr10	58382623	58382823	+	571.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_201242, intron 1 of 9)	intron (NM_201242, intron 1 of 9)	11269.0	NM_201242	110829.0	Mm.57734	NM_026148	ENSMUSG00000019920	Lims1	2310016J22Rik|4921524A02Rik|AI507642|AU021743|AW551584|C430041B13Rik|Lims1l|PINCH|PINCH1	LIM and senescent cell antigen-like domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115189518-4	chr11	115189414	115189614	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033393, intron 2 of 9)	intron (NM_001033393, intron 2 of 9)	2027.0	NM_001033393	320534.0	Mm.260587	NM_001033393	ENSMUSG00000045980	Tmem104	C630005D06Rik|mFLJ00021	transmembrane protein 104	protein-coding	7.01936913527827	7.01864661060079	6.17739045790051	6.95241742784996	6.67549293171955	6.13487644484448	7.10352903257415	6.55417669201506	-0.183731054011477	0.437325635419848	0.908551975084304
Merged-chr17-31073114-2	chr17	31073014	31073214	+	907.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009593, intron 2 of 14)	(CA)n|Simple_repeat|Simple_repeat	15420.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-108846348-2	chr9	108846248	108846448	+	815.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001359573, exon 32 of 36)	exon (NM_001359573, exon 32 of 36)	-7695.0	NM_134420	171429.0	Mm.45201	NM_134420	ENSMUSG00000023259	Slc26a6	B930010B04Rik|CFEX|Pat-1|Pat1	solute carrier family 26, member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101365951-2	chr7	101365851	101366051	+	631.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001040111, intron 1 of 33)	B1F1|SINE|Alu	-12171.0	NM_001040112	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-10928495-2	chr8	10928395	10928595	+	579.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_030715)	promoter-TSS (NR_030715)	-38.0	NR_135302	665306.0	Mm.358758	NR_030715	ENSMUSG00000038917	3930402G23Rik	-	RIKEN cDNA 3930402G23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-28540128-4	chr2	28540020	28540220	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145836, intron 1 of 17)	intron (NM_001145836, intron 1 of 17)	6656.0	NM_001145836	19730.0	Mm.5236	NM_009058	ENSMUSG00000026821	Ralgds	Gnds|Rgds|mKIAA1308	ral guanine nucleotide dissociation stimulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-95551181-2	chr10	95551081	95551281	+	702.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358996, intron 3 of 4)	intron (NM_001358996, intron 3 of 4)	8140.0	NR_037212	100526463.0		NR_037212	ENSMUSG00000092867	Mir3058	mir-3058|mmu-mir-3058	microRNA 3058	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-53460265-4	chr3	53460167	53460367	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172501, intron 3 of 6)	intron (NM_172501, intron 3 of 6)	2991.0	NM_172501	212114.0	Mm.85744	NM_172501	ENSMUSG00000042997	Nhlrc3	4833441N19|8030451K01Rik|mKIAA4083	NHL repeat containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67215320-4	chr10	67215217	67215417	+	882.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_207221, exon 4 of 26)	exon (NM_207221, exon 4 of 26)	29567.0	NM_001242396	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81641933-2	chr10	81641833	81642033	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027480, intron 14 of 19)	intron (NM_027480, intron 14 of 19)	-7136.0	NM_001142963	100233208.0	Mm.327168	NM_001142963	ENSMUSG00000096856	Gm10778	-	predicted gene 10778	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-67770933-3	chr18	67770812	67771012	+	608.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3964.0	NM_001360934	72124.0	Mm.307315	NM_028112	ENSMUSG00000079614	Seh1l	2610007A16Rik|AW540070|SEC13L|SEH1A|SEH1B|Seh1	SEH1-like (S. cerevisiae	protein-coding	-0.596842805300509	-0.585303808786005	-0.00955895473296897	-0.592000618056304	-0.596122480062425	-0.0730115950106444	-0.588250186376743	-0.591491072907279	-0.223695750873747	0.937247517267841	1
Merged-chr2-181275493-4	chr2	181275377	181275577	+	984.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198169, intron 2 of 9)	intron (NM_198169, intron 2 of 9)	12489.0	NM_198169	229004.0	Mm.220423	NM_198169	ENSMUSG00000038705	Gmeb2	AI839884	glucocorticoid modulatory element binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-9902554-4	chr3	9902447	9902647	+	995.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68868.0	NM_001195031	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-98033465-3	chr3	98033379	98033579	+	906.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010928, intron 1 of 33)	intron (NM_010928, intron 1 of 33)	19941.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-25393111-3	chr14	25393011	25393211	+	974.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4|LINE|L1	-66074.0	NM_001310666	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80718752-2	chr10	80718652	80718852	+	849.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007460, intron 13 of 30)	intron (NM_007460, intron 13 of 30)	16059.0	NM_027829	71564.0	Mm.35802	NM_027829	ENSMUSG00000055862	Izumo4	9030607L17Rik|AI550407	IZUMO family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78580603-3	chr15	78580514	78580714	+	970.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155437, intron 1 of 1)	intron (NR_155437, intron 1 of 1)	975.0	NR_155437	102640742.0	Mm.253544	NR_155437	ENSMUSG00000116097	Gm36738	-	predicted gene, 36738	ncRNA	0.982529859701945	0.288999647881716	0.28019833349749	0.618640036901001	0.263533380008484	0.290970050082257	1.31664052212531	0.465008053133747	0.494078501502341	0.791605399867453	1
Merged-chr9-24503009-1	chr9	24502909	24503109	+	1000.0	f0_balb.idr	exon (NM_172920, exon 1 of 22)	exon (NM_172920, exon 1 of 22)	131.0	NM_001359948	244745.0	Mm.38526	NM_172920	ENSMUSG00000043067	Dpy19l1	1100001I19Rik|6030402K12|AI225861|AW558481	dpy-19-like 1 (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72110783-2	chr6	72110683	72110883	+	546.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011375, intron 1 of 6)	intron (NM_011375, intron 1 of 6)	12157.0	NR_045163	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-55507279-4	chr1	55507201	55507401	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114663, intron 1 of 5)	intron (NM_001114663, intron 1 of 5)	101355.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	5.47858310360226	5.36405130787142	5.36771185441536	5.71801907106311	5.47293396289159	5.59203561149019	5.46361863353135	4.50660088005348	-0.200952530079119	0.511144620754026	0.94512318675548
Merged-chr1-87213901-4	chr1	87213800	87214000	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347083)	promoter-TSS (NM_001347083)	-11.0	NM_001347083	26987.0	Mm.227183	NM_023314	ENSMUSG00000026254	Eif4e2	2700069E09Rik|AI036339|AV129531|D0H0S6743E|Eif4el3	eukaryotic translation initiation factor 4E member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165332818-4	chr2	165332710	165332910	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6331.0	NM_207706	140579.0	Mm.35064	NM_080287	ENSMUSG00000017670	Elmo2	1190002F24Rik|CED-12	engulfment and cell motility 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-41407822-3	chr12	41407725	41407925	+	864.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053122, intron 4 of 6)	ORR1C1-int|LTR|ERVL-MaLR	78232.0	NM_001271708	16981.0	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-59466409-2	chr2	59466309	59466509	+	550.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR10A|LTR|ERVK	-18244.0	NM_029723	76747.0	Mm.275769	NM_029723	ENSMUSG00000026989	Dapl1	2310032F03Rik|EEDA	death associated protein-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59819870-2	chr15	59819770	59819970	+	657.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24911.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	-0.953721354153451	-1.41025554057125	-1.42001056191158	-1.42802362688808	-1.44024889148474	-1.40814158675276	-1.41780223890411	-1.42658929208844	-2.11310844444413	0.543369238581748	1
Merged-chr15-100681972-4	chr15	100681861	100682061	+	879.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033612, intron 5 of 7)	B1_Mur2|SINE|Alu	5959.0	NM_033612	109901.0	Mm.2131	NM_033612	ENSMUSG00000023031	Cela1	1810009A17Rik|1810062B19Rik|Ela-1|Ela1|PC-TsF	chymotrypsin-like elastase family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-80813050-4	chr15	80812955	80813155	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177124, intron 1 of 21)	intron (NM_177124, intron 1 of 21)	14445.0	NM_177124	213988.0	Mm.131328	NM_144812	ENSMUSG00000047888	Tnrc6b	2700090M07Rik|A730065C02Rik|AI848765|D230019K20Rik	trinucleotide repeat containing 6b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-50244947-2	chr11	50244847	50245047	+	599.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER2|DNA|TcMar-Tigger	-6415.0	NR_132733	17001.0	Mm.245151	NM_008521	ENSMUSG00000020377	Ltc4s	-	leukotriene C4 synthase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-147918704-2	chr4	147918604	147918804	+	803.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011122, intron 14 of 18)	intron (NM_011122, intron 14 of 18)	-13795.0	NM_001285921	170731.0	Mm.154312	NM_133201	ENSMUSG00000029020	Mfn2	D630023P19Rik|Fzo	mitofusin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70674217-4	chr8	70674130	70674330	+	780.450012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015816, intron 1 of 4)	ID_B1|SINE|B4	999.0	NM_015816	50783.0	Mm.248188	NM_015816	ENSMUSG00000031848	Lsm4	-	LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-163602882-4	chr2	163602770	163602970	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131225, intron 1 of 3)	intron (NR_131225, intron 1 of 3)	556.0	NR_131225	76080.0	Mm.89828	NM_029512	ENSMUSG00000017679	Ttpal	3110080A02Rik|5830472M02Rik	tocopherol (alpha) transfer protein-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-36793687-4	chr15	36793573	36793773	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_011740, exon 2 of 7)	5' UTR (NM_011740, exon 2 of 7)	865.0	NM_011740	22631.0	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-83742379-4	chr2	83742265	83742465	+	987.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008402, intron 2 of 29)	Charlie24|DNA|hAT-Charlie	17968.0	NM_008402	16410.0	Mm.227	NM_008402	ENSMUSG00000027087	Itgav	1110004F14Rik|2610028E01Rik|CD51|D430040G12Rik	integrin alpha V	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-36562401-2	chr5	36562305	36562505	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133910, intron 2 of 13)	intron (NM_133910, intron 2 of 13)	19992.0	NM_133910	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	0.0908293726449624	0.751434653108113	0.104445410056661	0.0993431341131052	0.775949236595784	0.636206043315248	0.105900542056991	0.100235870399545	0.895677595489024	0.677912107557325	1
Merged-chr13-37944543-2	chr13	37944443	37944643	+	668.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177869, intron 10 of 11)	intron (NM_001177869, intron 10 of 11)	49665.0	NM_025965	107513.0	Mm.426670	NM_025965	ENSMUSG00000021427	Ssr1	2510001K09Rik|6330400D04|AI159733|AI452176|SSR|TRAPA	signal sequence receptor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-64684301-2	chr17	64684201	64684401	+	943.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008549, intron 12 of 21)	intron (NM_008549, intron 12 of 21)	82652.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114675446-4	chr11	114675337	114675537	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053273)	promoter-TSS (NM_053273)	-31.0	NM_053273	117160.0	Mm.271934	NM_053273	ENSMUSG00000034714	Ttyh2	1110001A03Rik	tweety family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-61505084-4	chr11	61504991	61505191	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013717)	promoter-TSS (NM_013717)	-53.0	NM_013717	27078.0	Mm.261226	NM_013717	ENSMUSG00000001039	B9d1	AW045994|B9|Eppb9	B9 protein domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129698245-2	chr4	129698150	129698350	+	605.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	-1405.0	NM_001356378	230770.0	Mm.257157	NM_199305	ENSMUSG00000053730	Tmem39b	6330509E05Rik|BC037095	transmembrane protein 39b	protein-coding	0.361197106500638	-0.0849632563692494	0.354616171887945	-0.093535032111014	-0.098798459522941	-0.083870755942809	0.476512138070582	-0.0928837239764857	-0.569465629637239	0.80692046838444	1
Merged-chr10-81358345-3	chr10	81358244	81358444	+	868.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028657, intron 1 of 9)	intron (NM_028657, intron 1 of 9)	853.0	NM_028657	73822.0	Mm.182281	NM_028657	ENSMUSG00000034854	Mfsd12	C19orf28|F630110N24Rik|Wdt1|gr	major facilitator superfamily domain containing 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-14640728-4	chr14	14640621	14640821	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62304.0	NM_001360505	218756.0	Mm.258893	NM_001033270	ENSMUSG00000021733	Slc4a7	E430014N10Rik|NBC3|NBCn1|NBCn1-G|Tg(Thy1-SNCA)12Mjff	solute carrier family 4, sodium bicarbonate cotransporter, member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-31460356-6	chr2	31460232	31460432	+	733.222229	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-9938.0	NM_007494	11898.0	Mm.3217	NM_007494	ENSMUSG00000076441	Ass1	AA408052|ASS|Ass-1|fold	argininosuccinate synthetase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-63554660-2	chr4	63554560	63554760	+	641.083374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4103.0	NM_001356355	230279.0	Mm.41523	NM_144905	ENSMUSG00000045917	Tmem268	6330416G13Rik|AW492431|bM230C2.2	transmembrane protein 268	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-67374649-2	chr7	67374549	67374749	+	975.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1791.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-52843554-1	chr6	52843454	52843654	+	654.0	f1_balb.idr	intron (NM_173406, intron 2 of 4)	intron (NM_173406, intron 2 of 4)	66066.0	NM_001168277	231986.0	Mm.386865	NM_173406	ENSMUSG00000063568	Jazf1	AI591476|C820002C15|Jaz1|Tip27	JAZF zinc finger 1	protein-coding	0.0796306873591441	-0.0648332863099589	-0.0717594428887837	-0.0771513404347242	-0.084845772425602	0.952368402700902	-0.070225865771954	0.53111954952281	3.36935725032688	0.125701915577799	1
Merged-chr6-40236084-6	chr6	40236025	40236225	+	832.402771	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004182, intron 2 of 2)	intron (NM_001004182, intron 2 of 2)	-89353.0	NM_023538	69923.0	Mm.32840	NM_023538	ENSMUSG00000029916	Agk	2610037M15Rik|6720408I04Rik|AI465370|Mulk	acylglycerol kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-126602422-4	chr2	126602328	126602528	+	868.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008230, intron 7 of 11)	intron (NM_008230, intron 7 of 11)	16250.0	NM_008230	15186.0	Mm.18603	NM_008230	ENSMUSG00000027360	Hdc	AW108189|Hdc-a|Hdc-c|Hdc-e|Hdc-s	histidine decarboxylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-92354880-8	chr13	92354762	92354962	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010049)	promoter-TSS (NM_010049)	79.0	NM_010049	13361.0	Mm.23695	NM_010049	ENSMUSG00000021707	Dhfr	8430436I03Rik|AA607882|AI662710|AW555094	dihydrofolate reductase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-70946932-4	chr2	70946843	70947043	+	916.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A0|LTR|ERVL-MaLR	71431.0	NM_001110512	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-73177657-2	chr14	73177557	73177757	+	562.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_134083, intron 13 of 14)	intron (NM_134083, intron 13 of 14)	29194.0	NR_030459	751541.0		NR_030459	ENSMUSG00000076121	Mir687	Mirn687|mir-687|mmu-mir-687	microRNA 687	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-105685345-4	chr12	105685245	105685445	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178613)	promoter-TSS (NM_178613)	-7.0	NM_178613	66787.0	Mm.248019	NM_178613	ENSMUSG00000044715	Gskip	4933433P14Rik	GSK3B interacting protein	protein-coding	4.65067578049889	4.40475071484027	4.26211435313825	4.08313762955878	4.87669375755509	5.1392998725328	4.66607979144268	4.33683962738446	0.51816940946078	0.170030129836807	0.63750671805688
Merged-chr14-25850600-3	chr14	25850483	25850683	+	817.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013469, intron 1 of 14)	intron (NM_013469, intron 1 of 14)	8428.0	NM_013469	11744.0	Mm.294083	NM_013469	ENSMUSG00000021866	Anxa11	A830099O17Rik|Anx11	annexin A11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-181861933-2	chr1	181861833	181862033	+	659.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	-19532.0	NM_133815	98386.0	Mm.4538	NM_133815	ENSMUSG00000004880	Lbr	AI505894|ic	lamin B receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-125568503-4	chr8	125568407	125568607	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357372, intron 1 of 21)	intron (NM_001357372, intron 1 of 21)	1356.0	NM_001357372	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	5.16638223527328	5.22169942652103	5.39197945152541	5.07853423124535	4.97869651151179	4.96643333765453	4.90353540710335	5.36994074455618	-0.174133750643955	0.562382285898907	0.960362415684079
Merged-chr5-134551448-4	chr5	134551310	134551510	+	776.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039162, intron 1 of 15)	intron (NM_001039162, intron 1 of 15)	1024.0	NM_001039162	269713.0	Mm.255138	NM_009990	ENSMUSG00000063146	Clip2	B230327O20|CLIP-115|Clip1|Cyln2|WSCR4|mKIAA0291|wbscr4	CAP-GLY domain containing linker protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80126946-2	chr10	80126846	80127046	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301853, intron 6 of 8)	intron (NM_001301853, intron 6 of 8)	10441.0	NM_001195268	100503659.0	Mm.485395	NM_015761	ENSMUSG00000035640	Cbarp	9630008F14|Dos|R29144/1	calcium channel, voltage-dependent, beta subunit associated regulatory protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118176407-2	chr11	118176307	118176507	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001112700, intron 10 of 12)	intron (NM_001112700, intron 10 of 12)	36335.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-98083143-4	chr3	98083027	98083227	+	985.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010928, intron 5 of 33)	RSINE1|SINE|B4	69589.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-72984233-3	chr5	72984130	72984330	+	728.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22674.0	NM_173403	231290.0	Mm.491387	NM_173403	ENSMUSG00000029219	Slc10a4	E130304D01	solute carrier family 10 (sodium/bile acid cotransporter family), member 4	protein-coding	0.327005394080434	1.11115344310038	0.343623096058313	0.337399804561633	0.32855677570729	0.884150075672464	0.959033973811604	0.668135862336656	0.776540342196314	0.676221815148264	1
Merged-chr10-127563566-2	chr10	127563466	127563666	+	809.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 42 of 88)	intron (NM_008512, intron 42 of 88)	-29007.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56256056-4	chr17	56255911	56256111	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010192)	promoter-TSS (NM_010192)	-782.0	NM_010192	14154.0	Mm.290813	NM_010192	ENSMUSG00000043683	Fem1a	AW611390|Fem1aa	feminization 1 homolog a (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-107625648-3	chr11	107625478	107625678	+	736.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198298, intron 14 of 31)	intron (NM_198298, intron 14 of 31)	-12144.0	NR_105897	102465562.0		NR_105897	ENSMUSG00000098497	Mir6932	Gm27691|mmu-mir-6932	microRNA 6932	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-182908573-4	chr1	182908481	182908681	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46207.0	NM_016928	53791.0	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-48464556-1	chr17	48464456	48464656	+	549.0	f1_c57bl6.idr	intron (NM_152823, intron 7 of 8)	intron (NM_152823, intron 7 of 8)	9655.0	NM_152823	76589.0	Mm.311629	NM_152823	ENSMUSG00000043592	Unc5cl	2510009H09Rik|BB155270|Zud	unc-5 family C-terminal like	protein-coding	-1.18832717429738	-1.16380929885254	-0.856565824811958	-1.18328408639367	-1.18787580914644	-1.16149229066421	-0.849604865165746	-1.18171197755832	0.0406512889656815	0.990321405100139	1
Merged-chr3-48740649-2	chr3	48740549	48740749	+	615.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	-131549.0	NR_003617	66332.0	Mm.46124	NM_025493		1700018B24Rik	-	enhancer of rudimentary homolog pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-26352127-4	chr2	26352020	26352220	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001139504)	promoter-TSS (NM_001139504)	-10.0	NM_001139504	52838.0	Mm.31239	NM_026828	ENSMUSG00000075467	Dnlz	1110034G11Rik|D2Bwg1335e|HEP1	DNL-type zinc finger	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-43788212-2	chr5	43788112	43788312	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6063.0	NM_178729	242960.0	Mm.25794	NM_178729	ENSMUSG00000039753	Fbxl5	Fbl4|Fir4	F-box and leucine-rich repeat protein 5	protein-coding	0.339897195019627	0.456635478989271	0.51526561265386	0.0210684819866724	0.140597188593422	0.0288105116592091	0.0248922762581628	0.0215853727412244	-3.04362026119143	0.153951536555215	1
Merged-chr4-15267995-3	chr4	15267923	15268123	+	877.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181401, intron 1 of 2)	intron (NM_181401, intron 1 of 2)	2203.0	NM_181401	100201.0	Mm.394111	NM_181401	ENSMUSG00000043252	Tmem64	9630015D15Rik|AI790744|AV300874	transmembrane protein 64	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-34576792-2	chr2	34576692	34576892	+	676.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290625, intron 8 of 11)	intron (NM_001290625, intron 8 of 11)	169941.0	NM_001290626	227743.0	Mm.270866	NM_177345	ENSMUSG00000038696	Mapkap1	AI591529|D230039K05Rik|Sin1	mitogen-activated protein kinase associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-38725428-2	chr9	38725328	38725528	+	752.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145957, intron 6 of 18)	intron (NM_001145957, intron 6 of 18)	7160.0	NM_172767	67776.0	Mm.290950	NM_172767	ENSMUSG00000023186	Vwa5a	5830475I06Rik|AW552491|BCSC-1|E130119J22|Loh11cr2a	von Willebrand factor A domain containing 5A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36386432-2	chr18	36386332	36386532	+	742.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081365, intron 2 of 2)	intron (NM_001081365, intron 2 of 2)	37808.0	NM_001081365	66060.0	Mm.272527	NM_001081365	ENSMUSG00000046727	Cystm1	0610010O12Rik	cysteine-rich transmembrane module containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-87997396-2	chr3	87997296	87997496	+	766.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_007529, intron 2 of 13)	CpG	2960.0	NM_007529	12032.0	Mm.4598	NM_007529	ENSMUSG00000004892	Bcan	Cspg7	brevican	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128138053-2	chr10	128137953	128138153	+	748.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039080, intron 7 of 13)	intron (NM_001039080, intron 7 of 13)	38515.0	NM_019711	56516.0	Mm.42247	NM_019711	ENSMUSG00000040043	Rbms2	2610315E04Rik|Scr3	RNA binding motif, single stranded interacting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-35580068-3	chr7	35579965	35580165	+	830.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_145840, exon 1 of 1)	3' UTR (NM_145840, exon 1 of 1)	5517.0	NM_145840	243923.0	Mm.222680	NM_145840	ENSMUSG00000056043	Rgs9bp	R9AP|Rgs9-1bp	regulator of G-protein signalling 9 binding protein	protein-coding	2.15144528812125	2.46681546831283	1.68178623732275	1.08030775481537	2.39760979780636	1.17697462971233	4.0744061155885	2.01494814192767	1.76541154169788	0.0851381611402429	0.448020902351155
Merged-chr1-16671279-4	chr1	16671193	16671393	+	993.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027415, intron 2 of 2)	B2_Mm2|SINE|B2	6102.0	NM_026392	70397.0	Mm.194225	NM_026392	ENSMUSG00000025940	Tmem70	1110020A09Rik|2210416J16Rik	transmembrane protein 70	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-112335789-3	chr13	112335586	112335786	+	962.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168403, intron 5 of 11)	MIR|SINE|MIR	47168.0	NM_001168404	77318.0	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	-0.902682857598014	-0.887932166885014	-0.708083751938422	-0.898469308313368	-0.90205553778598	-0.885088203308773	-0.181452545560865	-0.898026388631305	2.17390230862527	0.470410034150012	1
Merged-chr16-91871883-2	chr16	91871783	91871983	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001110275)	TTS (NM_001110275)	59747.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116425067-2	chr11	116424967	116425167	+	661.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9027.0	NM_176902	319370.0	Mm.258466	NM_176902	ENSMUSG00000050628	Ubald2	1110014K08Rik|D030012E24Rik|Fam100b	UBA-like domain containing 2	protein-coding	-0.439612022912903	0.547970073194403	-0.606895394395411	-0.611232439744079	-0.617442481154772	-0.600101083441922	-0.605664086466944	-0.610471388270089	-3.78277912354977	0.142995213046639	1
Merged-chr2-147307864-1	chr2	147307764	147307964	+	609.0	f0_balb.idr	non-coding (NR_030769, exon 5 of 6)	non-coding (NR_030769, exon 5 of 6)	54929.0	NR_040330	99041.0	Mm.373081	NR_040330		AI646519	Aspax1|Peat	expressed sequence AI646519	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123395591-5	chr5	123395529	123395729	+	724.766663	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133917, intron 1 of 16)	intron (NM_133917, intron 1 of 16)	831.0	NM_177582	208104.0	Mm.83277	NM_133917	ENSMUSG00000038342	Mlxip	AW228700|Mir|bHLHe36	MLX interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-170508462-2	chr2	170508362	170508562	+	739.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_040367, intron 1 of 2)	intron (NR_040367, intron 1 of 2)	-2768.0	NM_001110152	109054.0	Mm.28808	NM_001013369	ENSMUSG00000052033	Pfdn4	0610025M10Rik|1810063B06Rik|C-1|C1|Pfd4	prefoldin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-44048757-1	chr5	44048657	44048857	+	1000.0	f1_balb.idr	intron (NM_001163578, intron 3 of 22)	intron (NM_001163578, intron 3 of 22)	46011.0	NM_001163581	19126.0	Mm.6250	NM_008935	ENSMUSG00000029086	Prom1	4932416E19Rik|AC133|CD133|Prom|Prom-1|Proml1	prominin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-113099715-2	chr5	113099615	113099815	+	960.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172884, intron 2 of 7)	intron (NM_172884, intron 2 of 7)	-18131.0	NM_001359009	12962.0	Mm.378899	NM_021352	ENSMUSG00000029352	Crybb3	AI852419	crystallin, beta B3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-8589699-4	chr11	8589594	8589794	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 3 of 30)	intron (NM_001083587, intron 3 of 30)	74841.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-62677559-4	chr5	62677441	62677641	+	933.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178407, intron 12 of 32)	intron (NM_178407, intron 12 of 32)	88636.0	NM_178407	212285.0	Mm.244403	NM_178407	ENSMUSG00000037999	Arap2	Centd1|Gm148|mKIAA0580	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-124627910-4	chr2	124627812	124628012	+	989.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291000, intron 1 of 18)	B4A|SINE|B4	17616.0	NM_172537	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-95887578-4	chr15	95887466	95887666	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 2 of 19)	intron (NM_175344, intron 2 of 19)	-57494.0	NR_155276	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-25921939-2	chr15	25921839	25922039	+	610.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001034851, intron 3 of 8)	intron (NM_001034851, intron 3 of 8)	-11613.0	NM_001277318	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-86357418-4	chr11	86357307	86357507	+	954.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080931, intron 1 of 29)	CpG	118.0	NM_001080931	327987.0	Mm.341886	NM_001080931	ENSMUSG00000034297	Med13	1110067M05Rik|D030023K18|Thrap1|Trap240	mediator complex subunit 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-87422490-2	chr14	87422386	87422586	+	826.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_001253755, intron 1 of 11)	intron (NM_001253755, intron 1 of 11)	5903.0	NM_001253755	219249.0	Mm.35168	NM_172605	ENSMUSG00000022019	Tdrd3	4732418C03Rik|6720468N18	tudor domain containing 3	protein-coding	-1.8418762459921	-1.8125357239735	-1.82140854000656	-1.82869693527674	-1.56059678980999	-1.8106129477253	-1.81939992894326	-1.82739231600805	1.3620893379502	0.699511506488145	1
Merged-chr11-115070291-2	chr11	115070191	115070391	+	832.025024	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8252.0	NM_172050	217306.0	Mm.222667	NM_172050	ENSMUSG00000048498	Cd300e	BC034097|CLM2|Cd300le|TREM5	CD300E molecule	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-114640147-4	chr9	114640021	114640221	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153585)	promoter-TSS (NM_153585)	79.0	NM_153585	78893.0	Mm.283708	NM_153585	ENSMUSG00000056167	Cnot10	2600001P13Rik	CCR4-NOT transcription complex, subunit 10	protein-coding	6.87055486801534	7.10689289243235	7.35817048254835	6.96015484165127	6.9021132532743	6.74126648939915	7.11208251303482	7.07282812293247	-0.122613435359308	0.491176605173314	0.934429742421156
Merged-chr11-55474143-2	chr11	55474043	55474243	+	698.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013716, intron 1 of 11)	intron (NM_013716, intron 1 of 11)	4391.0	NM_013716	27041.0	Mm.39631	NM_013716	ENSMUSG00000018583	G3bp1	AI849976|B430204O07|C87777|G3bp|mKIAA4115	GTPase activating protein (SH3 domain) binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-99099938-2	chr13	99099881	99100081	+	727.708374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12060.0	NR_045495	69603.0	Mm.390632	NR_045495	ENSMUSG00000100410	2310020H05Rik	-	RIKEN cDNA 2310020H05 gene	ncRNA	0.843836789854053	1.10022714159595	1.06140233959409	1.47230234013583	0.849220096132375	0.721519201533162	1.07003340671873	1.48157361895443	-0.304840140722653	0.825500700729798	0.998431161219273
Merged-chr6-128135220-4	chr6	128135100	128135300	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175414, intron 1 of 8)	intron (NM_175414, intron 1 of 8)	8378.0	NM_175414	109246.0	Mm.21814	NM_175414	ENSMUSG00000030352	Tspan9	6720474K14Rik|9430079M16Rik|AU018597|Tspan-9	tetraspanin 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-26366117-3	chr12	26365999	26366199	+	720.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_130981, intron 3 of 4)	intron (NR_130981, intron 3 of 4)	19389.0	NR_130981	75243.0	Mm.444753	NR_130981	ENSMUSG00000114048	4930549C15Rik	-	RIKEN cDNA 4930549C15 gene	ncRNA	1.81554849817062	1.91686624310233	2.44319150680563	1.09931489454415	1.83107500474576	1.1461058539286	1.72195454466311	2.13404156475909	-0.419793161605432	0.710227171324678	0.998431161219273
Merged-chr5-31709944-2	chr5	31709844	31710044	+	622.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_181281, intron 2 of 10)	intron (NM_181281, intron 2 of 10)	11894.0	NM_144541	107976.0	Mm.482126	NM_144541	ENSMUSG00000052139	Babam2	6030405P19Rik|AI429776|B830038C02Rik|Bre	BRISC and BRCA1 A complex member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-157279062-4	chr2	157278961	157279161	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019642)	promoter-TSS (NM_019642)	-37.0	NM_001355163	20014.0	Mm.22130	NM_019642	ENSMUSG00000027642	Rpn2	1300012C06Rik|AV261018|Rpn-2	ribophorin II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-60408937-5	chr3	60408791	60408991	+	906.56665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63939.0	NM_001253713	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55301734-2	chr19	55301634	55301834	+	937.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360595, intron 9 of 9)	intron (NM_001360595, intron 9 of 9)	14302.0	NM_001360595	66980.0	Mm.386789	NM_025883	ENSMUSG00000024982	Zdhhc6	2400007G07Rik|5930409M18Rik|AI462345|C77369|DHHC-6	zinc finger, DHHC domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-79982200-2	chr11	79982100	79982300	+	817.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	-10906.0	NM_001163018	52615.0	Mm.283410	NM_199196	ENSMUSG00000017548	Suz12	2610028O16Rik|AI195385|AU016842|AW536442|D11Ertd530e|mKIAA0160	SUZ12 polycomb repressive complex 2 subunit	protein-coding	-1.43172712806865	-1.3992492906874	-1.40907085678131	-1.41713858359971	-0.932192548427885	-1.39712091634321	-1.40684746950024	-1.41569446435649	2.19283191591698	0.528233640655333	1
Merged-chr5-99386746-3	chr5	99386647	99386847	+	877.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 2 of 3)	intron (NR_030692, intron 2 of 3)	-133820.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-131542125-2	chr2	131542025	131542225	+	599.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	20160.0	NM_013460	11550.0	Mm.389380	NM_013460	ENSMUSG00000027335	Adra1d	Adra-1|Adra1|Adra1a|Gpcr8|Spr8|[a]1d|alpha1D-AR	adrenergic receptor, alpha 1d	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91086538-4	chr2	91086448	91086648	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10130.0	NM_011355	20375.0	Mm.1302	NM_011355	ENSMUSG00000002111	Spi1	Dis-1|Dis1|PU.1|Sfpi-1|Sfpi1|Spi-1|Tcfpu1|Tfpu.1	spleen focus forming virus (SFFV) proviral integration oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-142443539-4	chr3	142443429	142443629	+	846.56665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47833.0	NM_019808	56376.0	Mm.117709	NM_019808	ENSMUSG00000028273	Pdlim5	1110001A05Rik|AI987914|C87059|Enh|Enh1|Enh2|Enh3|LIM	PDZ and LIM domain 5	protein-coding	3.98217102125269	3.28834040595714	2.94500763577934	3.51769134248996	3.67982050184643	3.60206181161698	2.83402891485466	3.67290055661924	-0.00905408543966756	0.987252870064425	0.998431161219273
Merged-chr4-105378040-3	chr4	105377925	105378125	+	735.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	220678.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-49396318-4	chr7	49396211	49396411	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175272, intron 3 of 37)	intron (NM_175272, intron 3 of 37)	150122.0	NM_175272	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-74960706-3	chr5	74960642	74960842	+	630.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045866, intron 2 of 4)	intron (NR_045866, intron 2 of 4)	11548.0	NR_045866	619945.0	Mm.359372	NM_001037908	ENSMUSG00000072874	Gm6116	EG619945	predicted gene 6116	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-49272399-2	chr11	49272299	49272499	+	643.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7751.0	NM_146471	258463.0	Mm.377517	NM_146471	ENSMUSG00000059864	Olfr1393	MOR256-24	olfactory receptor 1393	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-112714053-2	chr12	112713953	112714153	+	633.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8121.0	NM_001024602	217882.0	Mm.23689	NM_001024602	ENSMUSG00000072825	Cep170b	AI466840|AW555464|Kiaa0284|mKIAA0284	centrosomal protein 170B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-76328945-4	chr14	76328839	76329039	+	999.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	77477.0	NR_152108	72893.0	Mm.233565	NR_152108		2900040C04Rik	-	RIKEN cDNA 2900040C04 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70501136-2	chr8	70501036	70501236	+	883.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_018827, exon 6 of 9)	exon (NM_018827, exon 6 of 9)	5290.0	NR_151646	66462.0	Mm.28242	NM_025577	ENSMUSG00000058833	Rex1bd	2810428I15Rik	required for excision 1-B domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-118737264-4	chr10	118737158	118737358	+	733.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	131645.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-97718645-4	chr1	97718573	97718773	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173760, intron 25 of 27)	intron (NM_173760, intron 25 of 27)	51419.0	NM_173760	227399.0	Mm.220817	NM_173760	ENSMUSG00000040648	Ppip5k2	AW555814|Cfap160|D330021B20|Hisppd1|Vip2|mKIAA0433	diphosphoinositol pentakisphosphate kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-23675015-1	chr17	23674915	23675115	+	1000.0	f1_balb.idr	TTS (NM_013749)	TTS (NM_013749)	-1138.0	NM_001357380	386612.0	Mm.328831	NM_001008425	ENSMUSG00000041319	Thoc6	F830014G06Rik|Wdr58	THO complex 6	protein-coding	0.93421870006178	1.07947835753268	1.35093393535582	1.10928178673069	0.826497109768734	0.564392618518135	0.55524204514515	0.547391261330931	-3.0665672061756	0.0674400252812509	1
Merged-chr8-40852129-3	chr8	40852010	40852210	+	804.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1-int|LTR|ERVL-MaLR	-10257.0	NM_007514	11988.0	Mm.4676	NM_007514	ENSMUSG00000031596	Slc7a2	20.5|AI158848|Atrc2|CAT-2|Cat2|Tea	solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	protein-coding	3.30087450432488	3.35071770592325	3.56920823241238	2.80143550544061	2.85535059799727	2.48631019124431	1.51482049455586	1.96536732516959	-1.79364210573331	0.0173854185315773	0.161754337618325
Merged-chr10-80320572-4	chr10	80320486	80320686	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025521)	promoter-TSS (NM_025521)	-38.0	NM_025521	66374.0	Mm.383824	NM_025521	ENSMUSG00000020133	2310011J03Rik	AI452186|AW545358	RIKEN cDNA 2310011J03 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-57740053-4	chr3	57739954	57740154	+	800.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_130743, intron 1 of 9)	intron (NR_130743, intron 1 of 9)	3997.0	NR_130743	24017.0	Mm.274360	NM_011883	ENSMUSG00000036503	Rnf13	2010001H16Rik|Rzf	ring finger protein 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100860373-4	chr11	100860245	100860445	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164062)	promoter-TSS (NM_001164062)	-139.0	NM_001164062	20850.0	Mm.277403	NM_011488	ENSMUSG00000004043	Stat5a	AA959963|STAT5	signal transducer and activator of transcription 5A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-34673759-1	chr12	34673659	34673859	+	701.0	f1_c57bl6.idr	intron (NM_001271386, intron 3 of 27)	B3|SINE|B2	-144870.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	1.77778194811366	2.14574950924971	2.90036872943202	1.36802030046857	1.0927540639209	1.86428851474995	2.08588665787697	1.88879449420406	-1.01103303365383	0.337358178131747	0.837097850894413
Merged-chr16-76283897-1	chr16	76283797	76283997	+	741.0	f0_c57.idr	Intergenic	Intergenic	89152.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-85141225-3	chr6	85141126	85141326	+	761.422241	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3462.0	NM_011467	20751.0	Mm.28393	NM_011467	ENSMUSG00000033735	Spr	AA409688|Gm10328	sepiapterin reductase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89281794-2	chr3	89281694	89281894	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162425)	promoter-TSS (NM_001162425)	-843.0	NM_001162425	13636.0	Mm.15675	NM_010107	ENSMUSG00000027954	Efna1	AI325262|B61|Efl1|Epl1|Eplg1|Lerk1	ephrin A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-17904587-6	chr14	17904583	17904783	+	757.4365230000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113417, intron 2 of 9)	intron (NM_001113417, intron 2 of 9)	-76961.0	NM_009380	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-108532176-4	chr6	108532085	108532285	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 60 of 61)	intron (NM_010585, intron 60 of 61)	42442.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	4.80935927227202	5.17647157995375	4.45952499078337	4.49168203732824	4.64042415607709	5.46751266053884	4.11847818875399	4.36073137250328	-0.0251719808224836	0.949926640129852	0.998431161219273
Merged-chr4-155891412-2	chr4	155891312	155891512	+	981.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207223)	promoter-TSS (NM_207223)	350.0	NM_001033490	433813.0	Mm.259270	NM_001033490	ENSMUSG00000051557	Pusl1	2810021I11Rik|AI853843|D18346	pseudouridylate synthase-like 1	protein-coding	2.27947968219302	1.3646142653997	2.49259826838887	1.28039963174155	2.30058375624017	2.46997722561063	3.24316543142759	3.66563285166447	2.1309039526976	0.0179862851351738	0.166255353660874
Merged-chr13-44696273-3	chr13	44696158	44696358	+	681.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34516.0	NM_021878	16468.0	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-117853532-4	chr12	117853438	117853638	+	813.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146040, intron 1 of 9)	intron (NM_146040, intron 1 of 9)	9677.0	NM_146040	217946.0	Mm.281149	NM_146040	ENSMUSG00000021175	Cdca7l	BC006933|JPO2	cell division cycle associated 7 like	protein-coding	2.92992241021014	2.63948617156541	1.45149187433488	2.21761799148823	2.56790531847067	3.30455490011841	2.14014487472925	2.79232680231597	0.67036306079231	0.424978277007874	0.901293602726532
Merged-chr6-146221516-5	chr6	146221435	146221635	+	838.033325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019923, intron 45 of 56)	intron (NM_019923, intron 45 of 56)	280688.0	NM_010586	16439.0	Mm.7800	NM_010586	ENSMUSG00000030287	Itpr2	AI649341|InsP3R-2|InsP3R-5|Ip3r2|Itpr5|insP3R2	inositol 1,4,5-triphosphate receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-51813428-2	chr11	51813328	51813528	+	714.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_199299)	TTS (NM_199299)	44053.0	NM_199299	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-20321458-3	chr8	20321390	20321590	+	786.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	-24058.0	NR_030708	547150.0	Mm.359054	NR_030708	ENSMUSG00000071796	6820431F20Rik	-	cadherin 11 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-43452644-2	chr10	43452544	43452744	+	851.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001168289, intron 7 of 7)	intron (NM_001168289, intron 7 of 7)	-26496.0	NM_199028	331623.0	Mm.490388	NM_199028	ENSMUSG00000038214	Bend3	mKIAA1553	BEN domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-130462608-4	chr1	130462522	130462722	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010016, exon 1 of 10)	exon (NM_010016, exon 1 of 10)	122.0	NM_010016	13136.0	Mm.101591	NM_010016	ENSMUSG00000026399	Cd55	Daf|Daf-GPI|Daf1|GPI-DAF	CD55 molecule, decay accelerating factor for complement	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-29289067-2	chr7	29288967	29289167	+	589.833374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026731)	promoter-TSS (NM_026731)	-253.0	NM_026731	68458.0	Mm.2343	NM_026731	ENSMUSG00000037166	Ppp1r14a	1110001M11Rik|Cpi17	protein phosphatase 1, regulatory (inhibitor) subunit 14A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-104493608-4	chr2	104493506	104493706	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010434, intron 1 of 15)	CpG	883.0	NM_010434	15259.0	Mm.257925	NM_010434	ENSMUSG00000027177	Hipk3	DYRK6|FIST3|PKY|mir-1902	homeodomain interacting protein kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129629771-2	chr2	129629650	129629850	+	987.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291019, intron 7 of 7)	intron (NM_001291019, intron 7 of 7)	34288.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	1.75877657973234	1.85622813928135	1.08040220650892	1.60769896415418	2.26156736968318	1.72401875222843	1.08506530513191	2.0689151353528	0.761768295134413	0.510140877509744	0.945041303754863
Merged-chr7-140141521-4	chr7	140141431	140141631	+	848.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199301, intron 3 of 10)	intron (NM_199301, intron 3 of 10)	3967.0	NM_199301	212508.0	Mm.296088	NM_199301	ENSMUSG00000039018	Mtg1	Gm169|Gtpbp7	mitochondrial ribosome-associated GTPase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70073705-2	chr14	70073605	70073805	+	975.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3740.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-73627033-2	chr15	73626933	73627133	+	733.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2289.0	NM_001033219	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-17880064-4	chr5	17879969	17880169	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159558, intron 1 of 15)	intron (NM_001159558, intron 1 of 15)	8890.0	NM_001159558	12491.0	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 molecule	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-37487159-4	chr1	37487072	37487272	+	994.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_024017, exon 1 of 1)	non-coding (NR_024017, exon 1 of 1)	1433.0	NR_024017	77633.0	Mm.483177	NR_024017	ENSMUSG00000103948	4930594C11Rik	-	G1 to S phase transition pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-12833323-4	chr19	12833214	12833414	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001361971, exon 9 of 9)	exon (NM_001361971, exon 9 of 9)	-28463.0	NM_146702	258697.0	Mm.223132	NM_146702	ENSMUSG00000046272	Olfr1444	MOR202-4	olfactory receptor 1444	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-36758710-2	chr8	36758609	36758809	+	682.5	f0_balb.idr|f1_c57bl6.idr	intron (NM_001194940, intron 5 of 17)	intron (NM_001194940, intron 5 of 17)	-25655.0	NM_001194941	50768.0	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	2.2873993545145	2.16638308685701	1.23269216061414	2.14187844417383	1.3868645950929	2.30053615358396	1.98246061005872	2.04395974408158	-0.147017381163562	0.885583391499354	0.998431161219273
Merged-chr13-111490473-1	chr13	111490373	111490573	+	1000.0	f0_c57.idr	promoter-TSS (NM_001122963)	promoter-TSS (NM_001122963)	-346.0	NM_001361924	73274.0	Mm.57286	NM_028487	ENSMUSG00000032745	Gpbp1	1700034P14Rik|AU019836|D230035M11Rik|Gpbp|mGPBP	GC-rich promoter binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45080804-2	chr7	45080704	45080904	+	680.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	11409.0	NM_026555	52377.0	Mm.29997	NM_026555	ENSMUSG00000019539	Rcn3	6030455P07Rik|D530026G20Rik|D7Ertd671e|RLP49	reticulocalbin 3, EF-hand calcium binding domain	protein-coding	-0.77470346898156	-0.765341048433554	-0.319713670930351	-0.770784791472815	-0.300939631731329	-0.764646460349836	-0.767739517963786	-0.770371565253857	0.0897102984071192	0.976242779171559	1
Merged-chr4-155891783-4	chr4	155891678	155891878	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207223)	promoter-TSS (NM_207223)	-16.0	NM_001033490	433813.0	Mm.259270	NM_001033490	ENSMUSG00000051557	Pusl1	2810021I11Rik|AI853843|D18346	pseudouridylate synthase-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-54989862-2	chr11	54989762	54989962	+	576.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_138556, intron 19 of 24)	intron (NR_138556, intron 19 of 24)	-26922.0	NM_001271455	57783.0	Mm.259671	NM_021327	ENSMUSG00000020400	Tnip1	ABIN|ABIN-1|ABIN1|AU018810|Naf1|Nef|VAN	TNFAIP3 interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-59438195-4	chr4	59438081	59438281	+	946.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163288, intron 1 of 16)	CpG	452.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-59528635-2	chr11	59528535	59528735	+	678.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER31A|LTR|ERV1	-12934.0	NM_001359638	216799.0	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-55821099-4	chr12	55820990	55821190	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_019994, exon 1 of 41)	5' UTR (NM_019994, exon 1 of 41)	426.0	NM_019994	56784.0	Mm.292180	NM_019994	ENSMUSG00000021027	Ralgapa1	2310003F20Rik|4930400K19Rik|AI563624|GRIPE|Garnl1|Tulip1|mKIAA0884	Ral GTPase activating protein, alpha subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-59637183-4	chr11	59637101	59637301	+	900.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24235.0	NM_001011740	257886.0	Mm.457883	NM_001011740	ENSMUSG00000044061	Olfr225	MOR256-51	olfactory receptor 225	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-11973616-3	chr11	11973523	11973723	+	879.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177629, intron 2 of 15)	intron (NM_001177629, intron 2 of 15)	54348.0	NM_001177629	14783.0	Mm.273117	NM_010345	ENSMUSG00000020176	Grb10	5730571D09Rik|AI325020|Meg1|mKIAA0207	growth factor receptor bound protein 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-13574342-4	chr9	13574254	13574454	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45635.0	NM_001013813	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99388244-4	chr15	99388197	99388397	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4650.0	NM_026669	110213.0	Mm.16769	NM_026669	ENSMUSG00000023010	Tmbim6	5031406P05Rik|Bi1|Tegt	transmembrane BAX inhibitor motif containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-62508612-4	chr10	62508461	62508661	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011157)	promoter-TSS (NM_011157)	-804.0	NM_011157	19073.0	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-21037214-3	chr19	21037108	21037308	+	893.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-67502.0	NR_126458	75354.0	Mm.243873	NR_126458		4930554I06Rik	-	RIKEN cDNA 4930554I06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-29768485-4	chr7	29768377	29768577	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023750)	promoter-TSS (NM_023750)	-75.0	NM_023750	74352.0	Mm.251083	NM_023750	ENSMUSG00000046185	Zfp84	2210410P13Rik|4633401C23Rik|AI415447|BB081605|C86188|KRAB18|Zfp69	zinc finger protein 84	protein-coding	5.61573181137025	6.64298245230233	6.50343069236325	6.3055644995721	6.18173634133144	6.11913272140751	6.03962907174873	5.84652780813551	-0.279421989067513	0.263987526133978	0.766188681961536
Merged-chr4-59185175-2	chr4	59185075	59185275	+	941.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10B|LTR|ERVL	-4375.0	NM_011673	22234.0	Mm.198803	NM_011673	ENSMUSG00000028381	Ugcg	AU043821|C80537|Epcs21|GlcT-1|Ugcgl	UDP-glucose ceramide glucosyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-33261094-2	chr4	33260994	33261194	+	714.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-12307.0	NM_001033225	108767.0	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding	-0.264135576133481	-0.517221610989178	-0.520945181993167	-0.523813706049647	-0.527860816189446	-0.516381401901759	0.157372256476423	-0.357591680760928	1.80196729977981	0.49327863080817	1
Merged-chr11-117878418-3	chr11	117878335	117878535	+	949.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4909.0	NM_027919	71776.0	Mm.3200	NM_027919	ENSMUSG00000017713	Tha1	1300017K07Rik|GLY1	threonine aldolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-50287899-2	chr11	50287799	50287999	+	705.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_175334, intron 1 of 4)	intron (NM_175334, intron 1 of 4)	4437.0	NM_175334	103806.0	Mm.51116	NM_175334	ENSMUSG00000050567	Maml1	AI644666|AW743257|D930008C07Rik|Mam-1|Mam1|mKIAA0200	mastermind like transcriptional coactivator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167796663-2	chr2	167796563	167796763	+	605.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	105486.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-9828871-3	chr14	9828790	9828990	+	659.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360141, intron 7 of 9)	intron (NM_001360141, intron 7 of 9)	-55205.0	NR_030680	100042415.0	Mm.235938	NR_030680	ENSMUSG00000089686	Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-87414311-2	chr12	87414211	87414411	+	771.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C|LTR|ERVK	23446.0	NR_037228	100526546.0		NR_037228	ENSMUSG00000105428	Mir3068	mir-3068|mmu-mir-3068	microRNA 3068	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-68888911-3	chr9	68888817	68889017	+	673.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013646, intron 1 of 10)	intron (NM_013646, intron 1 of 10)	123571.0	NR_033299	320440.0	Mm.483129	NM_177159		9530091C08Rik	-	RIKEN cDNA 9530091C08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119375587-4	chr11	119375488	119375688	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178743, intron 12 of 16)	intron (NM_178743, intron 12 of 16)	-14884.0	NR_035453	100316690.0		NR_035453	ENSMUSG00000088015	Mir1932	mir-1932|mmu-mir-1932	microRNA 1932	ncRNA	4.29159423783738	4.12370941336439	3.72168341918585	3.3710021618713	3.12808827018694	3.61850344283181	4.08265975472447	3.63708719034961	-0.393767813880482	0.439471738971374	0.909130714404946
Merged-chr2-91965048-4	chr2	91964942	91965142	+	930.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1479.0	NM_138306	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153172077-2	chr2	153171977	153172177	+	740.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133847, intron 1 of 17)	L1ME1|LINE|L1	10776.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-158179679-2	chr2	158179579	158179779	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12329.0	NR_036606	73399.0	Mm.416861	NR_036606	ENSMUSG00000078957	1700060C20Rik	-	RIKEN cDNA 1700060C20 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-44169327-4	chr4	44169216	44169416	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1033.0	NM_001038993	73469.0	Mm.262859	NM_175201	ENSMUSG00000035696	Rnf38	1700065B19Rik|2610202O07Rik|AA673263|Oip1	ring finger protein 38	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122585547-1	chr8	122585447	122585647	+	892.6666869999999	f0_balb.idr	intron (NM_001193645, intron 9 of 11)	intron (NM_001193645, intron 9 of 11)	-8640.0	NM_009698	11821.0	Mm.1786	NM_009698	ENSMUSG00000006589	Aprt	C85684	adenine phosphoribosyl transferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84968758-4	chr8	84968655	84968855	+	905.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011563)	promoter-TSS (NM_011563)	-867.0	NM_001317385	21672.0	Mm.347009	NM_011563	ENSMUSG00000005161	Prdx2	AL022839|Band-8|NkefB|PRP|PrxII|TDX1|TPx|TPx-B|TR|TSA|Tdpx1|Torin	peroxiredoxin 2	protein-coding	4.24731696670529	4.3013149298343	3.97271287034594	4.49666160418844	4.14557174268968	3.98639239558146	3.50012463368698	4.33900910435391	-0.316707307794924	0.462977455782845	0.921412612820757
Merged-chr7-105732983-2	chr7	105732883	105733083	+	552.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_025897, exon 7 of 7)	3' UTR (NM_025897, exon 7 of 7)	3601.0	NM_025897	101867.0	Mm.231400	NM_025897	ENSMUSG00000030888	Rrp8	1500003O22Rik|2900001K19Rik|AW538116	ribosomal RNA processing 8, methyltransferase, homolog (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-64588901-2	chr11	64588801	64589001	+	726.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-152227.0	NR_028445	654805.0	Mm.436132	NR_028445		F930015N05Rik	-	RIKEN cDNA F930015N05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-43441346-2	chr8	43441246	43441446	+	607.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20C1_MM|LTR|ERVK	86791.0	NM_001009547	382007.0	Mm.55952	NM_001009547	ENSMUSG00000063900	Adam26b	-	a disintegrin and metallopeptidase domain 26B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-122650755-4	chr6	122650653	122650853	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24329.0	NM_139218	73708.0	Mm.27982	NM_139218	ENSMUSG00000046323	Dppa3	2410075G02Rik|PCG7|PGC7|Stella	developmental pluripotency-associated 3	protein-coding	5.44014614768687	5.42313147847013	5.2976010384582	5.22912555330656	5.29747567083576	5.51970206230445	3.93836713116413	4.62247836155547	-0.440855894813749	0.215243323598398	0.705944860566832
Merged-chr2-166421470-2	chr2	166421370	166421570	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-25981.0	NR_015558	319684.0	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-59733436-2	chr10	59733336	59733536	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359267, intron 3 of 11)	RMER15|LTR|ERVL	30873.0	NM_001291443	216001.0	Mm.27199	NM_144822	ENSMUSG00000020111	Micu1	C730016L05Rik|Calc|Cbara1	mitochondrial calcium uptake 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28716323-3	chr17	28716216	28716416	+	730.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168513, intron 3 of 11)	MTE2a|LTR|ERVL-MaLR	23748.0	NM_001357724	26416.0	Mm.311337	NM_011951	ENSMUSG00000053436	Mapk14	CSBP2|Crk1|Csbp1|Mxi2|PRKM14|PRKM15|p38|p38-alpha|p38MAPK|p38a|p38alpha	mitogen-activated protein kinase 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124037094-4	chr5	124037000	124037200	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4840.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-63126036-3	chr14	63125924	63126124	+	864.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007798, intron 1 of 9)	B4A|SINE|B4	3562.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-47781280-4	chr6	47781181	47781381	+	858.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22371.0	NR_030485	735289.0		NR_030485	ENSMUSG00000076060	Mir704	Mirn704|mir-704|mmu-mir-704	microRNA 704	ncRNA	2.97598641870006	2.947931651226	2.61382878143857	3.2733351645887	2.75170579543034	3.07530161269744	2.49319087601644	2.97988778322504	-0.249772568354971	0.705375745459469	0.998431161219273
Merged-chr18-65695567-4	chr18	65695468	65695668	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2700.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-16675209-1	chr1	16675109	16675309	+	554.0	f0_c57.idr	intron (NM_027415, intron 2 of 2)	(TG)n|Simple_repeat|Simple_repeat	10018.0	NM_026392	70397.0	Mm.194225	NM_026392	ENSMUSG00000025940	Tmem70	1110020A09Rik|2210416J16Rik	transmembrane protein 70	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-186579623-2	chr1	186579523	186579723	+	626.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20942.0	NR_131158	320449.0	Mm.404477	NR_131124	ENSMUSG00000103690	A730004F24Rik	-	RIKEN cDNA A730004F24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-40687008-1	chr8	40686908	40687108	+	554.0	f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	11931.0	NM_010086	13526.0	Mm.67403	NM_010086	ENSMUSG00000046723	Adam24	Dtgn5	a disintegrin and metallopeptidase domain 24 (testase 1)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-121545661-4	chr3	121545572	121545772	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13328.0	NM_145394	213603.0	Mm.33062	NM_145394	ENSMUSG00000039865	Slc44a3	BC010552	solute carrier family 44, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-61229570-1	chr19	61229470	61229670	+	543.0	f1_balb.idr	Intergenic	RMER17A|LTR|ERVK	-1152.0	NM_009970	12982.0	Mm.287228	NM_009970	ENSMUSG00000059326	Csf2ra	CD116|Csfgmra|GM-CSF-Ra|GM-CSFR	colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26095438-4	chr17	26095346	26095546	+	850.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019731)	promoter-TSS (NM_019731)	24.0	NM_019731	56520.0	Mm.41787	NM_019731	ENSMUSG00000024177	Nme4	2610027N22Rik|2810024O08Rik|5730493H09Rik|NM23-M4|Nm23M4	NME/NM23 nucleoside diphosphate kinase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-14151806-1	chr10	14151706	14151906	+	764.0	f1_c57bl6.idr	TTS (NM_010437)	TTS (NM_010437)	185427.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	0.467296321154793	0.567285525708485	0.395162649841423	0.725591091066348	0.220295923396808	0.574533383026509	0.399777941588632	0.226945862557341	-1.39541279897273	0.43630967625641	1
Merged-chr19-4012845-4	chr19	4012772	4012972	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133666)	promoter-TSS (NM_133666)	-117.0	NM_133666	17995.0	Mm.29842	NM_133666	ENSMUSG00000037916	Ndufv1	CI-51kD	NADH dehydrogenase (ubiquinone) flavoprotein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-73131210-4	chr11	73131126	73131326	+	891.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361245, intron 22 of 30)	intron (NM_001361245, intron 22 of 30)	7068.0	NM_010353	14841.0	Mm.42045	NM_010353	ENSMUSG00000050107	Haspin	Gsg2	histone H3 associated protein kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-115828492-4	chr4	115828398	115828598	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175308, intron 1 of 3)	intron (NM_175308, intron 1 of 3)	406.0	NM_175308	100465.0	Mm.35571	NM_175308	ENSMUSG00000028709	Mob3c	AW822253|D130076I06Rik|Mobkl2c	MOB kinase activator 3C	protein-coding	4.52124587820063	4.74735720321524	5.37777298575681	5.38321762501533	4.74495312507912	4.82996213432371	5.19983893700834	4.27906080523775	-0.312012688434623	0.390488918610272	0.879663170387916
Merged-chr16-38708736-2	chr16	38708636	38708836	+	813.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_020260, intron 1 of 11)	PB1D10|SINE|Alu	4299.0	NM_020260	12549.0	Mm.370848	NM_020260	ENSMUSG00000022799	Arhgap31	5830477L08Rik|AU041750|Cdgap|D330026I07Rik	Rho GTPase activating protein 31	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99124052-2	chr15	99123952	99124152	+	651.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur3|SINE|Alu	-2793.0	NM_139140	72572.0	Mm.276650	NM_139140	ENSMUSG00000051934	Spats2	2700012F11Rik|59kDa|Scr59|p59	spermatogenesis associated, serine-rich 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-55131598-2	chr11	55131498	55131698	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_172258, exon 8 of 11)	exon (NM_172258, exon 8 of 11)	20108.0	NM_172258	215332.0	Mm.87054	NM_172258	ENSMUSG00000049491	Slc36a3	PAT3|TRAMD2|tramdorin2	solute carrier family 36 (proton/amino acid symporter), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-70790500-3	chr6	70790383	70790583	+	948.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009075, intron 1 of 8)	intron (NM_009075, intron 1 of 8)	1692.0	NM_009075	19895.0	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3328889-2	chr19	3328789	3328989	+	565.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013495, intron 1 of 18)	intron (NM_013495, intron 1 of 18)	5588.0	NM_013495	12894.0	Mm.18522	NM_013495	ENSMUSG00000024900	Cpt1a	C730027G07|CPTI|Cpt1	carnitine palmitoyltransferase 1a, liver	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-15527345-4	chr17	15527267	15527467	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008799)	promoter-TSS (NM_008799)	-66.0	NM_008799	18567.0	Mm.323	NM_008799	ENSMUSG00000014771	Pdcd2	AI528543|Pcd2|RP-8	programmed cell death 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-128737473-2	chr7	128737373	128737573	+	719.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145955, intron 1 of 15)	intron (NM_145955, intron 1 of 15)	2956.0	NM_145955	210711.0	Mm.58882	NM_145955	ENSMUSG00000048170	Mcmbp	1110007A13Rik|AU017382|BC025641|MCM-BP	minichromosome maintenance complex binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132081531-2	chr4	132081431	132081631	+	754.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-6218.0	NM_001128607	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6985298-2	chr19	6985198	6985398	+	871.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_011697, intron 6 of 6)	intron (NM_011697, intron 6 of 6)	2353.0	NM_001185164	22340.0	Mm.15607	NM_011697	ENSMUSG00000024962	Vegfb	VEGF-B|Vrf	vascular endothelial growth factor B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120744633-2	chr8	120744533	120744733	+	897.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301811, intron 3 of 8)	intron (NM_001301811, intron 3 of 8)	5994.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-3356628-2	chr2	3356528	3356728	+	586.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145921, intron 3 of 7)	intron (NM_145921, intron 3 of 7)	9941.0	NM_145921	99035.0	Mm.13808	NM_145921	ENSMUSG00000026645	Olah	AI607300|E230009B14Rik|Thedc1	oleoyl-ACP hydrolase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-101938743-4	chr5	101938651	101938851	+	887.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 13 of 66)	intron (NM_172882, intron 13 of 66)	131170.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-69442722-1	chr9	69442622	69442822	+	805.0	f0_balb.idr	Intergenic	Intergenic	-10961.0	NM_007585	12306.0	Mm.238343	NM_007585	ENSMUSG00000032231	Anxa2	AW215814|Cal1h	annexin A2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-59434093-1	chr14	59433993	59434193	+	545.0	f1_c57bl6.idr	intron (NM_001320720, intron 2 of 13)	MTB_Mm|LTR|ERVL-MaLR	6787.0	NM_001320725	107303348.0		NM_001320725		Gm45935	Setdb2-phf11c	predicted gene, 45935	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-157427119-3	chr1	157427026	157427226	+	929.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14531.0	NM_177644	226525.0	Mm.235028	NM_177644	ENSMUSG00000070565	Rasal2	6530401P13|A330066M24Rik	RAS protein activator like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69120679-1	chr11	69120579	69120779	+	584.0	f1_c57bl6.idr	intron (NM_033041, intron 1 of 3)	intron (NM_033041, intron 1 of 3)	226.0	NM_033041	84653.0	Mm.98505	NM_033041	ENSMUSG00000023781	Hes7	bHLHb37	hes family bHLH transcription factor 7	protein-coding	2.87267967185724	2.8998200430079	1.90938908294108	2.53746426643633	2.52084339678058	2.72214219785956	1.44810620047984	2.44330881754385	-0.512452686305593	0.55003650519447	0.958882219733107
Merged-chr15-27702967-4	chr15	27702909	27703109	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21467.0	NM_001242423	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124021328-4	chr5	124021229	124021429	+	896.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177876, intron 1 of 3)	intron (NM_177876, intron 1 of 3)	10931.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-52712379-4	chr15	52712281	52712481	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027212)	promoter-TSS (NM_027212)	-64.0	NM_027212	69790.0	Mm.195562	NM_027212	ENSMUSG00000038622	Med30	1810038N03Rik|2510044J04Rik|TRAP25|Thrap6	mediator complex subunit 30	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-5426658-2	chr2	5426558	5426758	+	695.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_030601, intron 1 of 1)	intron (NR_030601, intron 1 of 1)	47268.0	NR_030601	100124465.0		NR_030601	ENSMUSG00000078031	Mir466d	Mirn466d	microRNA 466d	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-110080927-4	chr6	110080807	110081007	+	796.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-564605.0	NM_001346640	108073.0	Mm.240881	NM_177328	ENSMUSG00000056755	Grm7	6330570A01Rik|BB176677|C030018L03|E130018M02Rik|Gpr1g|Gprc1g|SMN2|Tg(SMN2)89Ahmb|mGluR7	glutamate receptor, metabotropic 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-29034778-2	chr17	29034678	29034878	+	995.333374	f1_balb.idr|f1_c57bl6.idr	intron (NR_036613, intron 1 of 6)	B2_Mm1a|SINE|B2	2118.0	NR_036613	20383.0	Mm.6787	NM_013663	ENSMUSG00000071172	Srsf3	AL024116|Sfrs3|X16	serine/arginine-rich splicing factor 3	protein-coding	1.02992337776059	1.7754819645157	0.877265288486771	1.8510535853523	1.0370347630575	1.79064761195109	0.881232004735183	1.86208919034591	0.0341559664125819	0.979383973933246	0.998431161219273
Merged-chr10-52423194-3	chr10	52423042	52423242	+	921.111145	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030250, intron 1 of 4)	intron (NM_030250, intron 1 of 4)	5595.0	NM_030250	52014.0	Mm.199964	NM_030250	ENSMUSG00000023068	Nus1	1600027K07Rik|AU019165|AW538011|BC003223|D10Ertd438e	NUS1 dehydrodolichyl diphosphate synthase subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-156030011-4	chr1	156029926	156030126	+	879.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144791, intron 4 of 6)	intron (NM_144791, intron 4 of 6)	4791.0	NM_001160019	208263.0	Mm.211654	NM_144791	ENSMUSG00000026466	Tor1aip1	LAP1|Lap1B	torsin A interacting protein 1	protein-coding	1.30831035759892	1.1293369999918	0.885814853512719	1.23834156417647	1.1881223717147	1.747786077047	1.96836021947007	1.38770225421635	1.7711255266658	0.152439073796979	0.606152454954537
Merged-chr5-139197858-3	chr5	139197759	139197959	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2778.0	NM_001256115	77053.0	Mm.210845	NM_024451	ENSMUSG00000036817	Sun1	4632417G13Rik|5730434D03Rik|Unc84a|mKIAA0810	Sad1 and UNC84 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80797998-4	chr10	80797925	80798125	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013651)	promoter-TSS (NM_013651)	601.0	NM_023900	78670.0	Mm.41479	NM_023900	ENSMUSG00000035278	Plekhj1	9530063M10Rik	pleckstrin homology domain containing, family J member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-94509895-4	chr6	94509817	94510017	+	956.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026255, intron 2 of 9)	intron (NM_026255, intron 2 of 9)	9603.0	NM_026255	67582.0	Mm.280725	NM_026255	ENSMUSG00000045100	Slc25a26	4930433D19Rik|4933433F13Rik|AW557176|D6Bwg0781e|Slc25a6	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-84924437-2	chr15	84924337	84924537	+	589.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016714, intron 1 of 7)	intron (NM_016714, intron 1 of 7)	1009.0	NM_016714	18141.0	Mm.28379	NM_016714	ENSMUSG00000016619	Nup50	1700030K07Rik|AI413123|Npap60	nucleoporin 50	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-45441243-2	chr9	45441143	45441343	+	945.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081270, intron 1 of 32)	intron (NM_001081270, intron 1 of 32)	-10011.0	NR_040732	74602.0	Mm.394117	NR_040732	ENSMUSG00000097074	4833428L15Rik	-	RIKEN cDNA 4833428L15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55497488-4	chr14	55497372	55497572	+	992.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155104, intron 17 of 38)	intron (NR_155104, intron 17 of 38)	6402.0	NR_155104	268747.0	Mm.151577	NM_001024645	ENSMUSG00000022211	Carmil3	Lrrc16b|mFLJ00240	capping protein regulator and myosin 1 linker 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-103030420-4	chr11	103030314	103030514	+	920.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008707, intron 1 of 11)	intron (NM_008707, intron 1 of 11)	1871.0	NM_008707	18107.0	Mm.10265	NM_008707	ENSMUSG00000020936	Nmt1	AW536594	N-myristoyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-179830960-2	chr1	179830860	179831060	+	554.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR6-int|LTR|ERV1	-26945.0	NM_026375	226747.0	Mm.128165	NM_026375	ENSMUSG00000026491	Ahctf1	6230412P20Rik|AV011447|Elys	AT hook containing transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-38824068-4	chr2	38823982	38824182	+	818.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010264, intron 3 of 10)	intron (NM_010264, intron 3 of 10)	-28653.0	NR_029568	387176.0		NR_029568	ENSMUSG00000065423	Mir181a-2	Mirn181|Mirn181a|Mirn181a-2|miR-181|mir-181a|mir-181a-2	microRNA 181a-2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-59469237-2	chr17	59469137	59469337	+	647.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-455915.0	NM_026497	67993.0	Mm.36507	NM_026497	ENSMUSG00000024228	Nudt12	0610016O18Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71951024-4	chr8	71950940	71951140	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164581)	promoter-TSS (NM_001164581)	-26.0	NM_001164581	234413.0	Mm.334607	NM_001164581	ENSMUSG00000052446	Zfp961	A230105L22Rik|BC065788|mszf37|mszf55-2	zinc finger protein 961	protein-coding	6.67560647741298	6.94381795831569	6.99327685048572	7.45719904710385	6.98439359774158	7.41704233684758	6.95448874418713	7.46878078988292	0.187597792910858	0.348434074757619	0.848378678037495
Merged-chr2-157132311-2	chr2	157132211	157132411	+	645.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001139520, intron 1 of 16)	B4A|SINE|B4	2911.0	NM_001139520	56045.0	Mm.248478	NM_018851	ENSMUSG00000027639	Samhd1	E330031J07Rik|Mg11	SAM domain and HD domain, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-88273302-2	chr8	88273202	88273402	+	970.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007406, intron 1 of 27)	intron (NM_007406, intron 1 of 27)	899.0	NM_007406	11513.0	Mm.288206	NM_007406	ENSMUSG00000031659	Adcy7	AA407758	adenylate cyclase 7	protein-coding	-0.39266749143573	-0.37918178880696	0.300864665086138	-0.387003345023526	0.191845734706177	-0.378187561482402	-0.38262138181903	-0.386407744500582	-0.328695801893993	0.902428204388329	1
Merged-chr12-103339858-4	chr12	103339742	103339942	+	893.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023049, intron 2 of 9)	intron (NM_023049, intron 2 of 9)	16159.0	NM_023049	65256.0	Mm.27159	NM_023049	ENSMUSG00000021200	Asb2	1110008E15Rik	ankyrin repeat and SOCS box-containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6950746-3	chr19	6950666	6950866	+	844.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007522, exon 3 of 4)	exon (NM_007522, exon 3 of 4)	8204.0	NM_001285453	12015.0	Mm.4387	NM_007522	ENSMUSG00000024959	Bad	AI325008|Bbc2	BCL2-associated agonist of cell death	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126837530-4	chr8	126837439	126837639	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11481.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-13500171-2	chr10	13500071	13500271	+	901.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001330198)	promoter-TSS (NM_001330198)	-857.0	NM_001330198	66848.0	Mm.26625	NM_025799	ENSMUSG00000019810	Fuca2	0610025O11Rik|5530401P20Rik	fucosidase, alpha-L- 2, plasma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111469681-4	chr12	111469577	111469777	+	777.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16146.0	NM_001033248	212539.0	Mm.81916	NM_001033248	ENSMUSG00000010529	Gm266	-	predicted gene 266	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-59951937-4	chr10	59951814	59952014	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029083)	promoter-TSS (NM_029083)	-144.0	NM_029083	74747.0	Mm.21697	NM_029083	ENSMUSG00000020108	Ddit4	5830413E08Rik|AA415483|REDD1|Rtp801|dig2	DNA-damage-inducible transcript 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21444922-2	chr9	21444822	21445022	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357721, intron 1 of 19)	L1M4|LINE|L1	20014.0	NM_001357719	13430.0	Mm.433257	NM_007871	ENSMUSG00000033335	Dnm2	Dyn2|Udnm|b2b2159Clo	dynamin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-22188382-2	chr1	22188282	22188482	+	578.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-225732.0	NM_001310477	226922.0	Mm.336519	NM_023872	ENSMUSG00000028033	Kcnq5	7730402H11|9230107O05Rik|AA589396|D1Mgi1	potassium voltage-gated channel, subfamily Q, member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-149610755-2	chr4	149610655	149610855	+	840.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023051, intron 1 of 18)	intron (NM_023051, intron 1 of 18)	24287.0	NM_023051	65945.0	Mm.38993	NM_023051	ENSMUSG00000039953	Clstn1	1810034E21Rik|Cst-1|Cstn1	calsyntenin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-21049564-4	chr14	21049475	21049675	+	999.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018829, intron 1 of 8)	intron (NM_018829, intron 1 of 8)	2867.0	NM_018829	55946.0	Mm.376269	NM_018829	ENSMUSG00000021824	Ap3m1	1200013D09Rik|C78982|R75378	adaptor-related protein complex 3, mu 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-69360839-4	chr12	69360755	69360955	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3679.0	NM_025441	66244.0	Mm.46705	NM_025441	ENSMUSG00000020982	Nemf	1500011I12Rik|4933405E14Rik|Sdccag1	nuclear export mediator factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-9619855-4	chr18	9619752	9619952	+	801.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007593)	promoter-TSS (NM_007593)	-383.0	NM_007593	26369.0	Mm.195831	NM_007593	ENSMUSG00000050996	Cetn1	caltractin	centrin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-16798504-4	chr1	16798417	16798617	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	110061.0	NM_001159711	17087.0	Mm.116844	NM_016923	ENSMUSG00000025779	Ly96	ESOP-1|MD-2|MD2	lymphocyte antigen 96	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-10450500-1	chr4	10450400	10450600	+	555.0	f1_balb.idr	Intergenic	RLTR1B-int|LTR|ERV1	347302.0	NR_045185	73624.0	Mm.67392	NR_045185	ENSMUSG00000086080	1700123O12Rik	-	RIKEN cDNA 1700123O12 gene	ncRNA	-1.01619048107133	-0.995033651274249	-1.00815691281228	-1.0117845606299	-0.146812645560773	-0.992189785753965	-1.00518609405377	-1.01132261587602	3.17967657538059	0.326742161226751	1
Merged-chr13-110711074-4	chr13	110710974	110711174	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MDa|LINE|L1	-192425.0	NR_131193	75139.0	Mm.490931	NR_131193	ENSMUSG00000114472	Gm38397	-	predicted gene, 38397	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34348101-2	chr17	34348001	34348201	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3456.0	NM_010381	100504404.0	Mm.15680	NM_010381		H2-Ea-ps	AI323765|E-alpha-f|H-2Ea|H2-Ea|I-Ealpha|Ia-3|Ia3|MHC-H2-Ea	histocompatibility 2, class II antigen E alpha, pseudogene	protein-coding	3.81719391371904	4.25996826541437	3.86300920913025	3.82582170589827	3.36141437277187	4.69703129134914	3.96368207798362	4.03485945382647	0.191032331337302	0.688164542957801	0.996533206832645
Merged-chr4-117868094-2	chr4	117867994	117868194	+	989.1666869999999	f1_balb.idr|f1_c57bl6.idr	exon (NM_008135, exon 14 of 14)	exon (NM_008135, exon 14 of 14)	4376.0	NM_001034876	381546.0	Mm.440118	NM_001034876	ENSMUSG00000078588	Ccdc24	Gm1028	coiled-coil domain containing 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-83625411-4	chr2	83625312	83625512	+	691.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19166.0	NM_026934	69082.0	Mm.27804	NM_026934	ENSMUSG00000027091	Zc3h15	1700006A17Rik|1810012H02Rik|2610312B22Rik|FM22|Ierepo4	zinc finger CCCH-type containing 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-31947448-4	chr16	31947356	31947556	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_027897, exon 1 of 1)	non-coding (NR_027897, exon 1 of 1)	1065.0	NR_027897	106264.0	Mm.347369	NM_025320	ENSMUSG00000107002	0610012G03Rik	AI839730	RIKEN cDNA 0610012G03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-51718236-3	chr3	51718162	51718362	+	757.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 2 of 4)	intron (NM_001004176, intron 2 of 4)	57083.0	NM_001310482	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-59293821-2	chr11	59293721	59293921	+	639.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3070.0	NM_009522	22416.0	Mm.1367	NM_009522	ENSMUSG00000009900	Wnt3a	Wnt-3a|vt	wingless-type MMTV integration site family, member 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-97165736-2	chr15	97165636	97165836	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_155278, intron 2 of 3)	B1_Mus1|SINE|Alu	1508.0	NR_155278	102635594.0	Mm.392594	NR_155278	ENSMUSG00000116295	Gm32885	-	predicted gene, 32885	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-65764308-8	chr5	65764184	65764384	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024917, intron 1 of 19)	CpG	763.0	NM_001024917	333789.0	Mm.332398	NM_001024917	ENSMUSG00000037795	N4bp2	B3bp|E430014I16|Gm1791|Gm868	NEDD4 binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-96413726-3	chr7	96413610	96413810	+	968.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011858, intron 2 of 32)	intron (NM_011858, intron 2 of 32)	-71746.0	NR_046043	670727.0	Mm.421352	NR_046043	ENSMUSG00000085751	Gm15412	-	predicted gene 15412	ncRNA	-0.320596388714908	-0.0957933908005699	-0.561214789294148	-0.56362413936201	-0.431723215903251	-0.557365222819225	-0.560523982097954	-0.408381114905018	-1.38391853330741	0.583195023044502	1
Merged-chr7-72166455-3	chr7	72166307	72166507	+	944.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024703, intron 14 of 22)	intron (NM_001024703, intron 14 of 22)	140188.0	NM_001024703	244049.0	Mm.217412	NM_001024703	ENSMUSG00000032776	Mctp2	Gm489	multiple C2 domains, transmembrane 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-79871939-2	chr11	79871839	79872039	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	90448.0	NM_144826	216987.0	Mm.274961	NM_144826	ENSMUSG00000035575	Utp6	4732497O03Rik|HCA66	UTP6 small subunit processome component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-67778233-4	chr5	67778146	67778346	+	734.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001284345, intron 7 of 36)	intron (NM_001284345, intron 7 of 36)	69185.0	NM_009727	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	1.48220804062772	1.20601218419032	1.82105099437177	0.827257531002334	1.31646364004206	0.846648199736612	1.31441719590653	0.828562071903851	-1.32395078098162	0.36138712264015	0.857240549117541
Merged-chr8-4613708-3	chr8	4613619	4613819	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145591, intron 1 of 3)	intron (NM_145591, intron 1 of 3)	549.0	NM_145591	233987.0	Mm.102799	NM_145591	ENSMUSG00000058748	Zfp958	-	zinc finger protein 958	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-57780780-3	chr8	57780684	57780884	+	939.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175032, intron 11 of 11)	intron (NM_175032, intron 11 of 11)	-127729.0	NM_144731	108150.0	Mm.62886	NM_144731	ENSMUSG00000031608	Galnt7	AI225872	polypeptide N-acetylgalactosaminyltransferase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-58728477-7	chr1	58728357	58728557	+	937.285706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355056, intron 2 of 8)	intron (NM_001355056, intron 2 of 8)	-2095.0	NM_001293805	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-88653166-2	chr17	88653066	88653266	+	838.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15494.0	NM_023630	71828.0	Mm.61330	NM_023630	ENSMUSG00000024154	Gtf2a1l	1700011N16Rik|Alf|Gtf2a1lf	general transcription factor IIA, 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141462702-2	chr4	141462602	141462802	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_009541, exon 4 of 16)	exon (NM_009541, exon 4 of 16)	18029.0	NM_009541	22642.0	Mm.389590	NM_009541	ENSMUSG00000006215	Zbtb17	AA589413|Lp-1|Miz1|Zfp100|mZ13	zinc finger and BTB domain containing 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-95848629-2	chr15	95848529	95848729	+	888.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253813, intron 2 of 20)	intron (NM_001253813, intron 2 of 20)	-18557.0	NR_155276	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36785423-2	chr1	36785323	36785523	+	632.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6439.0	NM_001289612	22637.0	Mm.8038	NM_009539	ENSMUSG00000026117	Zap70	Srk|ZAP-70|mrtle|mur	zeta-chain (TCR) associated protein kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-135691136-4	chr1	135691024	135691224	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28939.0	NM_001360782	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-30583634-4	chr18	30583532	30583732	+	990.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	310767.0	NR_151699	225326.0	Mm.194127	NM_181414	ENSMUSG00000033628	Pik3c3	5330434F23Rik|Vps34	phosphatidylinositol 3-kinase catalytic subunit type 3	protein-coding	3.44916978358649	2.45397174422853	2.53487095996225	3.04852265072113	3.08339594586872	3.74371105007748	2.83463847346265	3.45660108054621	0.629471599689069	0.330387071735116	0.83197671091297
Merged-chr2-25498077-4	chr2	25497982	25498182	+	979.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_027062)	TTS (NM_027062)	2424.0	NM_027062	69379.0	Mm.24596	NM_027062	ENSMUSG00000015083	C8g	-	complement component 8, gamma polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116586980-4	chr11	116586874	116587074	+	888.1124880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5527.0	NM_173755	217342.0	Mm.243950	NM_173755	ENSMUSG00000020802	Ube2o	9630022H21|B230113M03Rik|E2-230K|mKIAA1734	ubiquitin-conjugating enzyme E2O	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-139178591-3	chr4	139178485	139178685	+	713.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033543, exon 2 of 3)	non-coding (NR_033543, exon 2 of 3)	2070.0	NR_033543	100038595.0	Mm.385206	NR_033543	ENSMUSG00000073739	Gm16287	-	predicted gene 16287	ncRNA	3.66625191522539	3.30730268827401	3.59782194158314	3.43279625364417	2.87969933622784	2.99562121913316	2.61519107187025	3.29815274073898	-0.896940149711376	0.122414496050193	0.548442540556465
Merged-chr9-64914792-4	chr9	64914683	64914883	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162917, intron 34 of 34)	intron (NM_001162917, intron 34 of 34)	36824.0	NM_144813	214111.0	Mm.156124	NM_144813	ENSMUSG00000034452	Slc24a1	-	solute carrier family 24 (sodium/potassium/calcium exchanger), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-108704618-7	chr8	108704541	108704741	+	938.8095089999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-10003.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-164071209-4	chr2	164071085	164071285	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291155)	promoter-TSS (NM_001291155)	-16.0	NM_001291155	67145.0	Mm.23173	NM_025996	ENSMUSG00000018322	Tomm34	2610100K07Rik|TOM34	translocase of outer mitochondrial membrane 34	protein-coding	3.26839328936604	3.49000919588676	4.35590969222014	5.15241849293667	3.95272136113365	4.22458036257526	3.94402979725382	5.20025019436693	0.202058415745983	0.703226701381215	0.998431161219273
Merged-chr12-111376266-4	chr12	111376170	111376370	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183016, intron 1 of 36)	intron (NM_183016, intron 1 of 36)	1448.0	NM_183016	217866.0	Mm.27397	NM_183016	ENSMUSG00000021279	Cdc42bpb	MRCKb	CDC42 binding protein kinase beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55604115-4	chr14	55604009	55604209	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159418)	promoter-TSS (NM_001159418)	124.0	NM_001159417	16391.0	Mm.2032	NM_008394	ENSMUSG00000002325	Irf9	Irf-9|Isgf3g|p48	interferon regulatory factor 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150594518-4	chr4	150594412	150594612	+	999.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 12 of 22)	URR1B|DNA|hAT-Charlie	57662.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-62820373-3	chr11	62820269	62820469	+	911.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_053169, exon 1 of 6)	5' UTR (NM_053169, exon 1 of 6)	116.0	NM_053169	94092.0	Mm.117087	NM_053169	ENSMUSG00000047821	Trim16	9130006M08Rik|AI482483|EBBP	tripartite motif-containing 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-63357220-4	chr4	63357136	63357336	+	922.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013623, intron 3 of 5)	intron (NM_013623, intron 3 of 5)	1074.0	NM_013623	18407.0	Mm.381399	NM_013623	ENSMUSG00000028359	Orm3	Agp-3|Orm-3	orosomucoid 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-115620056-1	chr6	115619956	115620156	+	574.0	f1_c57bl6.idr	intron (NM_029780, intron 14 of 16)	intron (NM_029780, intron 14 of 16)	18118.0	NM_023290	67027.0	Mm.101316	NM_023290	ENSMUSG00000000439	Mkrn2	2610002L04Rik|C81377	makorin, ring finger protein, 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30270347-4	chr2	30270251	30270451	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252571, intron 2 of 9)	intron (NM_001252571, intron 2 of 9)	3532.0	NM_001252570	227696.0	Mm.297949	NM_172267	ENSMUSG00000079484	Phyhd1	-	phytanoyl-CoA dioxygenase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-97767935-4	chr15	97767816	97768016	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144850)	promoter-TSS (NM_144850)	-250.0	NM_001357630	223864.0	Mm.24028	NM_144850	ENSMUSG00000022469	Rapgef3	2310016P22Rik|9330170P05Rik|Epac|Epac1	Rap guanine nucleotide exchange factor (GEF) 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-19978995-4	chr10	19978905	19979105	+	857.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008580, intron 1 of 29)	RLTR11B|LTR|ERVK	44479.0	NM_008580	26408.0	Mm.6595	NM_008580	ENSMUSG00000071369	Map3k5	7420452D20Rik|ASK|ASK1|MAPKKK5|Mekk5	mitogen-activated protein kinase kinase kinase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-12518027-4	chr19	12517928	12518128	+	864.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16032.0	NM_172442	207521.0	Mm.247695	NM_172442	ENSMUSG00000039982	Dtx4	AI449438|BC044798|D930042H13|RNF155	deltex 4, E3 ubiquitin ligase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-17025807-2	chr7	17025707	17025907	+	820.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011155, intron 1 of 12)	intron (NM_011155, intron 1 of 12)	2107.0	NM_011155	19060.0	Mm.3294	NM_011155	ENSMUSG00000003099	Ppp5c	AU020526|PP5	protein phosphatase 5, catalytic subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-75943596-5	chr13	75943447	75943647	+	863.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_028493, exon 1 of 12)	5' UTR (NM_028493, exon 1 of 12)	277.0	NM_028493	73296.0	Mm.276200	NM_028493	ENSMUSG00000021589	Rhobtb3	1700040C17Rik|2610033K01Rik|4930503C18Rik|AI317148|AW208826|mKIAA0878	Rho-related BTB domain containing 3	protein-coding	2.58134187542756	2.91198264847391	3.19490382716702	3.97216688623744	2.07134432610196	2.13771134172345	2.43046691747555	3.12077251928674	-1.35630369033032	0.0652217902548322	0.382468738747545
Merged-chr5-137785747-2	chr5	137785647	137785847	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_144913, exon 1 of 4)	exon (NM_144913, exon 1 of 4)	954.0	NM_144913	231803.0	Mm.61193	NM_144913	ENSMUSG00000029726	Mepce	Bcdin3|D5Wsu46e	methylphosphate capping enzyme	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-160251634-3	chr1	160251547	160251747	+	782.844421	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038621, intron 3 of 8)	intron (NM_001038621, intron 3 of 8)	-38755.0	NM_009786	12301.0	Mm.10702	NM_009786	ENSMUSG00000014226	Cacybp	SIP	calcyclin binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-137733058-2	chr6	137732958	137733158	+	643.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2024.0	NM_011499	20901.0	Mm.22584	NM_011499	ENSMUSG00000030224	Strap	AW557906|C78091|C79202|Unrip	serine/threonine kinase receptor associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76244520-2	chr15	76244420	76244620	+	786.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1080.0	NM_001163575	671535.0	Mm.373750	NM_001163575	ENSMUSG00000063268	Parp10	-	poly (ADP-ribose) polymerase family, member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-98839068-2	chr7	98838968	98839168	+	637.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001285792, exon 3 of 7)	5' UTR (NM_001285792, exon 3 of 7)	223.0	NM_001285795	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-20682113-2	chr18	20682013	20682213	+	842.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVB7_2B-LTR_MM|LTR|ERVK	-16853.0	NR_155534	102633478.0		NR_155534	ENSMUSG00000085595	Gm16090	-	predicted gene 16090	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-24899847-3	chr9	24899747	24899947	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74361.0	NR_153861	102631612.0	Mm.410759	NR_153861		E130101E03Rik	-	RIKEN cDNA E130101E03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-38529949-2	chr5	38529849	38530049	+	667.833374	f1_balb.idr|f1_c57bl6.idr	exon (NM_011715, exon 13 of 15)	exon (NM_011715, exon 13 of 15)	-27797.0	NM_145559	117591.0	Mm.260137	NM_145559	ENSMUSG00000005107	Slc2a9	Glut9|SLC2A9B|SLC2a9A	solute carrier family 2 (facilitated glucose transporter), member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-74617659-7	chr13	74617556	74617756	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22197.0	NM_030711	80898.0	Mm.83526	NM_030711	ENSMUSG00000021583	Erap1	A-LAP|ARTS-1|Arts1|ERAAP|PILSA|PILSAP	endoplasmic reticulum aminopeptidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-28038440-3	chr5	28038317	28038517	+	867.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32995.0	NM_153526	231070.0	Mm.30221	NM_153526	ENSMUSG00000045294	Insig1	1810013C12Rik|Insig-1	insulin induced gene 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-33431521-4	chr2	33431408	33431608	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001276332)	promoter-TSS (NM_001276332)	-184.0	NM_001276332	241311.0	Mm.296512	NM_001085507	ENSMUSG00000068966	Zbtb34	Gm349|mKIAA1993	zinc finger and BTB domain containing 34	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-96438047-6	chr9	96437928	96438128	+	951.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40647.0	NM_011279	19823.0	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-4315298-4	chr18	4315224	4315424	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37629.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-113839020-2	chr5	113838920	113839120	+	658.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-8519.0	NM_009151	20345.0	Mm.332590	NM_009151	ENSMUSG00000048163	Selplg	CD162|Psgl-1|Psgl1|Selp1|Selpl	selectin, platelet (p-selectin) ligand	protein-coding	0.650063634515462	1.46282080737606	1.73023325753557	0.671535085482016	0.653308701689261	1.47653803472011	1.74749539805388	0.673749417983951	0.0403971063898838	0.97958403375647	0.998431161219273
Merged-chr4-122855962-1	chr4	122855862	122856062	+	549.0	f1_c57bl6.idr	intron (NM_008917, intron 8 of 8)	intron (NM_008917, intron 8 of 8)	19735.0	NM_008917	19063.0	Mm.277719	NM_008917	ENSMUSG00000028657	Ppt1	9530043G02Rik|AA960502|C77813|CLN1|D4Ertd184e|INCL|PPT	palmitoyl-protein thioesterase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106156806-2	chr11	106156706	106156906	+	604.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001356459, exon 5 of 5)	3' UTR (NM_001356459, exon 5 of 5)	3121.0	NM_001356459	67803.0	Mm.21687	NM_172397	ENSMUSG00000040699	Limd2	0610025L06Rik|AI413966	LIM domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101170505-3	chr11	101170404	101170604	+	889.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146030, intron 1 of 12)	CpG	798.0	NM_146030	217198.0	Mm.273254	NM_146030	ENSMUSG00000035172	Plekhh3	BC020025	pleckstrin homology domain containing, family H (with MyTH4 domain) member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-37642568-4	chr13	37642497	37642697	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-183441.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-72223110-4	chr5	72223004	72223204	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_003966, intron 1 of 22)	intron (NR_003966, intron 1 of 22)	19761.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-53308260-2	chr11	53308160	53308360	+	762.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7781.0	NM_008300	15525.0	Mm.239865	NM_008300	ENSMUSG00000020361	Hspa4	70kDa|AI317151|APG-2|Hsp110|Hsp70RY|mKIAA4025	heat shock protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81502427-2	chr15	81502327	81502527	+	597.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur2|LINE|L1	36111.0	NM_019712	56438.0	Mm.29405	NM_019712	ENSMUSG00000022400	Rbx1	1500002P15Rik|AA517855|ROC1	ring-box 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-36815313-2	chr5	36815213	36815413	+	600.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008550, intron 11 of 18)	intron (NM_008550, intron 11 of 18)	15336.0	NM_008550	17160.0	Mm.761	NM_008550	ENSMUSG00000029119	Man2b2	mKIAA0935	mannosidase 2, alpha B2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-102985820-2	chr15	102985720	102985920	+	806.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4719.0	NM_010466	15426.0	Mm.6167	NM_010466	ENSMUSG00000001657	Hoxc8	D130011F21Rik|Hox-3.1	homeobox C8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-64771389-4	chr9	64771263	64771463	+	990.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33607.0	NM_017382	53869.0	Mm.1387	NM_017382	ENSMUSG00000004771	Rab11a	-	RAB11A, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-69159722-4	chr12	69159634	69159834	+	982.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009093)	promoter-TSS (NM_009093)	-548.0	NM_009093	20090.0	Mm.379006	NM_009093	ENSMUSG00000034892	Rps29	-	ribosomal protein S29	protein-coding	4.42841211506957	5.0688243346342	4.9548611465418	5.4058435793137	5.28319443566615	5.14377397409794	5.81128761974799	5.23259943778652	0.456514553500377	0.161840943967602	0.622893812785488
Merged-chr11-8847853-4	chr11	8847725	8847925	+	981.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	163366.0	NM_001303610	15574.0	Mm.42201	NM_008316	ENSMUSG00000020413	Hus1	-	HUS1 checkpoint clamp component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-22360504-2	chr16	22360404	22360604	+	815.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC4|LINE|L1	65516.0	NR_153764	100043507.0		NR_153764		Gng5-ps	Gm15776	G protein subunit gamma 5, pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-54918099-4	chr18	54917995	54918195	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360787, intron 2 of 8)	intron (NM_001360787, intron 2 of 8)	72085.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-57478088-3	chr5	57478000	57478200	+	720.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	239819.0	NR_015588	319216.0	Mm.332387	NR_015588	ENSMUSG00000097216	4932441J04Rik	-	RIKEN cDNA 4932441J04 gene	ncRNA	1.23023103422728	0.872958968955113	1.00256972992709	1.31105201323804	0.931056128538292	0.674350626312325	0.664763910748645	1.31933513266346	-0.870450055383074	0.55404575191404	0.959914380895535
Merged-chr11-31736275-4	chr11	31736176	31736376	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-64414.0	NM_001024919	69556.0	Mm.34183	NM_001024919	ENSMUSG00000044502	Bod1	2310022M17Rik|BOD2.1|Fam44b	biorientation of chromosomes in cell division 1	protein-coding	5.10268914725974	5.3134015440152	5.85543541309062	5.09505851665477	5.41384126617162	5.57591131781028	4.2674207816631	5.44311222491207	-0.129577286252115	0.704749270790284	0.998431161219273
Merged-chr19-4094082-2	chr19	4093982	4094182	+	745.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	-3269.0	NM_026373	52004.0	Mm.29609	NM_026373	ENSMUSG00000024856	Cdk2ap2	5830466O21Rik|D19Ertd144e|Doc-1r	CDK2-associated protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-34479280-6	chr1	34479130	34479330	+	855.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19182.0	NM_009355	21755.0	Mm.10725	NM_009355	ENSMUSG00000026125	Prss39	Tesp1	protease, serine 39	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21723539-4	chr9	21723398	21723598	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010700)	promoter-TSS (NM_010700)	-78.0	NM_001252658	16835.0	Mm.3213	NM_010700	ENSMUSG00000032193	Ldlr	Hlb301	low density lipoprotein receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-14668651-4	chr19	14668536	14668736	+	965.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70453.0	NM_001302947	21888.0	Mm.103638	NM_011600	ENSMUSG00000024642	Tle4	5730411M05Rik|AA792082|Bce-1|Bce1|ESTM13|ESTM14|Grg4|X83332|X83333|grg-4	transducin-like enhancer of split 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105324567-2	chr8	105324467	105324667	+	712.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_177449, intron 1 of 4)	intron (NM_177449, intron 1 of 4)	1709.0	NM_177449	234684.0	Mm.381717	NM_177449	ENSMUSG00000041679	Lrrc29	A630024J02Rik|FBL9|FBXL9	leucine rich repeat containing 29	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-82952098-4	chr11	82952046	82952246	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183201)	promoter-TSS (NM_183201)	44.0	NM_183201	327978.0	Mm.42147	NM_183201	ENSMUSG00000054404	Slfn5	AI956840	schlafen 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-131855203-4	chr4	131855098	131855298	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025297, intron 3 of 9)	intron (NM_025297, intron 3 of 9)	11727.0	NM_025297	26922.0	Mm.192706	NM_025297	ENSMUSG00000028910	Mecr	AI195831|NRBF-1|Nrbf1	mitochondrial trans-2-enoyl-CoA reductase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-140961254-4	chr4	140961163	140961363	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023374)	promoter-TSS (NM_023374)	-8.0	NM_001355515	67680.0	Mm.246965	NM_023374	ENSMUSG00000009863	Sdhb	0710008N11Rik	succinate dehydrogenase complex, subunit B, iron sulfur (Ip)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-93849221-2	chr2	93849121	93849321	+	771.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290782, intron 1 of 14)	intron (NM_001290782, intron 1 of 14)	578.0	NM_183220	329470.0	Mm.486910	NM_183220	ENSMUSG00000040272	Accs	2610203E10Rik|Phacs	1-aminocyclopropane-1-carboxylate synthase (non-functional)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191840095-2	chr1	191839995	191840195	+	709.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18622.0	NM_010892	18005.0	Mm.33773	NM_010892	ENSMUSG00000026622	Nek2	AA617254|C77054	NIMA (never in mitosis gene a)-related expressed kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133692048-2	chr4	133691948	133692148	+	841.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080819, intron 10 of 19)	B1_Mur1|SINE|Alu	-18882.0	NM_001356466	230801.0	Mm.217004	NM_178698	ENSMUSG00000043257	Pigv	B330013B03|D430024F16Rik	phosphatidylinositol glycan anchor biosynthesis, class V	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-24601352-2	chr5	24601252	24601452	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025891, intron 1 of 12)	intron (NM_025891, intron 1 of 12)	650.0	NM_025891	66993.0	Mm.436539	NM_025891	ENSMUSG00000028949	Smarcd3	1500001J14Rik|2210409C08Rik|BAF60C	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-46810284-3	chr13	46810176	46810376	+	817.944458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010617, intron 14 of 37)	ORR1E|LTR|ERVL-MaLR	-82427.0	NM_175749	218210.0	Mm.255398	NM_175749	ENSMUSG00000021374	Nup153	B130015D15Rik|C88147	nucleoporin 153	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-93988092-4	chr11	93987999	93988199	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7992.0	NM_001199203	70834.0	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-58403759-3	chr13	58403691	58403891	+	857.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001301341)	promoter-TSS (NM_001301341)	-448.0	NM_001301341	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-30649997-3	chr5	30649893	30650093	+	868.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175675, intron 1 of 5)	intron (NM_175675, intron 1 of 5)	2054.0	NM_175675	74919.0	Mm.247985	NM_175675	ENSMUSG00000029175	Slc35f6	4930471M23Rik|5730478O19Rik|ANT2BP|P40|Tango9	solute carrier family 35, member F6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-78200172-4	chr17	78200006	78200206	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015800)	promoter-TSS (NM_015800)	-142.0	NM_015800	50766.0	Mm.311912	NM_015800	ENSMUSG00000024074	Crim1	AU015004	cysteine rich transmembrane BMP regulator 1 (chordin like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115494818-2	chr5	115494715	115494915	+	776.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10331.0	NM_133760	75387.0	Mm.332616	NM_133760	ENSMUSG00000029524	Sirt4	4930596O17Rik	sirtuin 4	protein-coding	2.80089749330193	3.15943560678382	2.98102884818773	1.14355457328883	2.45433958386436	1.22523223610134	1.18535232052691	1.84232285266759	-1.94625471420415	0.0693611477780533	0.395432853520725
Merged-chr11-60936154-4	chr11	60936057	60936257	+	984.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008928, intron 1 of 11)	MIRb|SINE|MIR	4100.0	NM_008928	26397.0	Mm.18494	NM_008928	ENSMUSG00000018932	Map2k3	AW212142|MEK3|MKK3|Prkmk3|mMKK3b	mitogen-activated protein kinase kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-78480049-2	chr10	78479949	78480149	+	761.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-15101.0	NM_172134	216134.0	Mm.206159	NM_172134	ENSMUSG00000032788	Pdxk	2310036D04Rik|AA119688|C77999	pyridoxal (pyridoxine, vitamin B6) kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165037410-2	chr2	165037310	165037510	+	577.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2631.0	NM_144892	228869.0	Mm.233080	NM_144892	ENSMUSG00000039804	Ncoa5	CIA	nuclear receptor coactivator 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80010194-2	chr7	80010094	80010294	+	655.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14620.0	NM_001145999	209225.0	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-104432016-3	chr3	104431988	104432188	+	880.366699	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	79830.0	NM_001025067	269473.0	Mm.34855	NM_001025067	ENSMUSG00000032913	Lrig2	4632419I10Rik|BB096938|LIG-2	leucine-rich repeats and immunoglobulin-like domains 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-7608765-2	chr18	7608661	7608861	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360860)	promoter-TSS (NM_001360860)	-607.0	NM_001360860	75739.0	Mm.133293	NM_001081287	ENSMUSG00000057440	Mpp7	1110068J02Rik|2810038M04Rik|5430426E14Rik|AI415104|Gm955	membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)	protein-coding	1.06648530594338	0.537516992229017	0.525706089545745	1.60406396461583	0.833407343367622	0.540151415958449	0.528328885816941	1.45532513109523	-0.474556421747245	0.778131089061499	0.998431161219273
Merged-chr9-66837492-2	chr9	66837396	66837596	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2790.0	NM_026674	68318.0	Mm.284229	NM_026674	ENSMUSG00000053040	Aph1c	0610008A10Rik|APH-1b|Aph1b	aph1 homolog C, gamma secretase subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171564475-4	chr1	171564388	171564588	+	849.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018729, intron 1 of 8)	MTC-int|LTR|ERVL-MaLR	5295.0	NM_018729	18106.0	Mm.2299	NM_018729	ENSMUSG00000004709	Cd244	2B4|C9.1|F730046O15Rik|Ly90|NAIL|NKR2B4|Nmrk|SLAMF4	CD244 natural killer cell receptor 2B4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-109053904-2	chr9	109053804	109054004	+	645.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026381)	promoter-TSS (NM_026381)	-962.0	NM_026381	66940.0	Mm.196533	NM_025858	ENSMUSG00000025647	Shisa5	2310008D10Rik|6430628I05Rik|Scotin|mShisa5	shisa family member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-128654632-4	chr4	128654514	128654714	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001195130)	promoter-TSS (NM_001195130)	-88.0	NM_001195130	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-146810121-2	chr5	146810021	146810221	+	729.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C|LTR|ERVK	-15165.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	0.320463272727177	0.566798866471629	-0.0304617588993471	-0.0342284022501742	0.100890867988139	-0.0244649865761588	-0.0293837258125985	0.381336614643337	-0.904620828747913	0.673474369521382	1
Merged-chr11-79279661-2	chr11	79279561	79279761	+	813.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24966.0	NM_019653	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72383418-2	chr6	72383318	72383518	+	901.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2950.0	NM_016872	53620.0	Mm.440321	NM_016872	ENSMUSG00000073002	Vamp5	AF119384|Camp	vesicle-associated membrane protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-119780568-2	chr8	119780468	119780668	+	648.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2152.0	NM_028883	74347.0	Mm.358759	NM_028883	ENSMUSG00000034105	Tldc1	4632415K11Rik|Kiaa1609	TBC/LysM associated domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-58034713-4	chr13	58034606	58034806	+	796.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195075, intron 8 of 16)	intron (NM_001195075, intron 8 of 16)	-11506.0	NR_030544	100124491.0		NR_030544	ENSMUSG00000077962	Mir874	Mirn874|mir-874|mmu-mir-874	microRNA 874	ncRNA	-0.29680960915209	0.451293445713656	-0.105934633012207	0.143296958329422	-0.295918571713187	-0.281503776144246	-0.286191114376423	-0.290193504896213	-3.71762001984412	0.117446027709426	1
Merged-chr16-90830059-4	chr16	90829957	90830157	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_133572)	promoter-TSS (NR_133572)	-802.0	NR_133572	70967.0	Mm.253077	NM_027627	ENSMUSG00000039903	Eva1c	1700092M14Rik|4931408A02Rik|Fam176c	eva-1 homolog C (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-79124388-2	chr3	79124242	79124442	+	917.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001099624, intron 1 of 23)	intron (NM_001099624, intron 1 of 23)	20545.0	NM_001310536	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	-0.802593673557486	-0.793094718163527	-0.341243695287107	-0.798614554876962	-0.802002397560642	-0.791090896558683	-0.332078011335404	-0.79819523297655	0.040958530317021	0.989184000390448	1
Merged-chr5-114102349-2	chr5	114102249	114102449	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033202, intron 1 of 12)	intron (NM_001033202, intron 1 of 12)	2016.0	NM_001033202	100756.0	Mm.240421	NM_001033202	ENSMUSG00000029592	Usp30	6330590F17Rik|AI851327|D5Ertd483e	ubiquitin specific peptidase 30	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-71595319-2	chr16	71595219	71595419	+	732.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1VL4|LINE|L1	345415.0	NR_040576	78221.0	Mm.399298	NR_040576		4930567J20Rik	-	RIKEN cDNA 4930567J20 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-151250347-2	chr1	151250247	151250447	+	686.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-94139.0	NM_001359262	117198.0	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129545658-4	chr2	129545563	129545763	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9061.0	NM_177653	228592.0	Mm.452175	NM_177653	ENSMUSG00000043727	F830045P16Rik	Sirpb3	RIKEN cDNA F830045P16 gene	protein-coding	2.98087343392572	1.70606604040811	2.93241954842779	3.22949192230787	3.43218832291288	2.93595158501462	3.57660958589912	3.91841777081048	1.12148954216158	0.092399008347428	0.470077818980346
Merged-chr16-10300915-2	chr16	10300815	10301015	+	983.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007929, intron 1 of 4)	intron (NM_007929, intron 1 of 4)	13053.0	NM_007929	13731.0	Mm.246009	NM_007929	ENSMUSG00000022505	Emp2	XMP	epithelial membrane protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-10241982-2	chr3	10241882	10242082	+	819.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12243.0	NM_001357161	75497.0	Mm.47052	NM_029310	ENSMUSG00000027530	Fabp12	1700008G05Rik	fatty acid binding protein 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-77272858-4	chr8	77272760	77272960	+	831.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030113, intron 20 of 22)	intron (NM_030113, intron 20 of 22)	-244196.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-137294532-4	chr5	137294424	137294624	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027356)	promoter-TSS (NM_027356)	-145.0	NM_027356	70240.0	Mm.124666	NM_027356	ENSMUSG00000051502	Ufsp1	2700038N03Rik|D5Ertd655e	UFM1-specific peptidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-98033076-2	chr3	98032976	98033176	+	804.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010928, intron 1 of 33)	intron (NM_010928, intron 1 of 33)	19538.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100395429-4	chr11	100395334	100395534	+	968.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010593, intron 1 of 13)	intron (NM_010593, intron 1 of 13)	2356.0	NM_010593	16480.0	Mm.299774	NM_010593	ENSMUSG00000001552	Jup	Ctnng|D930025P04Rik|PG	junction plakoglobin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-74634709-4	chr11	74634602	74634802	+	797.508301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013784, intron 2 of 3)	intron (NM_001013784, intron 2 of 3)	-14793.0	NM_001081158	74148.0	Mm.214574	NM_001081158	ENSMUSG00000020741	Cluh	1300001I01Rik|Kiaa0664|mKIAA0664	clustered mitochondria (cluA/CLU1) homolog	protein-coding	3.6416059028909	3.16756803752479	3.36326000738661	3.17783768842163	3.67006283711888	4.02076124336854	3.19420917562516	3.09494922375049	0.297655245673887	0.593507497566799	0.9706660979479
Merged-chr5-135807526-2	chr5	135807426	135807626	+	570.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10580.0	NM_021403	58212.0	Mm.271230	NM_021403	ENSMUSG00000039860	Srrm3	2900083I11Rik|AB041661|SRm300-like|Srrm2l	serine/arginine repetitive matrix 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-74064892-2	chr18	74064792	74064992	+	647.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172632)	promoter-TSS (NM_172632)	57.0	NM_172632	225724.0	Mm.254517	NM_172632	ENSMUSG00000024558	Mapk4	A330097D03Rik|Erk3|Prkm4|p63Mapk	mitogen-activated protein kinase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-99577466-4	chr10	99577389	99577589	+	788.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31682.0	NR_038019	100504202.0	Mm.403801	NR_038019	ENSMUSG00000111962	Gm20110	-	predicted gene, 20110	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-94389805-2	chr8	94389705	94389905	+	635.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357205, intron 3 of 7)	intron (NM_001357205, intron 3 of 7)	3376.0	NM_022331	64209.0	Mm.29151	NM_022331	ENSMUSG00000031770	Herpud1	Herp|Mifl|SUP	homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28388050-2	chr7	28387950	28388150	+	760.099976	f1_balb.idr|f1_c57bl6.idr	intron (NM_026042, intron 3 of 3)	intron (NM_026042, intron 3 of 3)	4640.0	NM_026042	67224.0	Mm.41647	NM_026042	ENSMUSG00000003444	Med29	2810405O22Rik|AU020902|Ixl	mediator complex subunit 29	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135419537-1	chr4	135419437	135419637	+	542.0	f1_c57bl6.idr	intron (NM_022980, intron 3 of 4)	MTC|LTR|ERVL-MaLR	-2904.0	NR_030481	735285.0		NR_030481	ENSMUSG00000076123	Mir700	Mirn700|mir-700|mmu-mir-700	microRNA 700	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-73505870-3	chr13	73505773	73505973	+	902.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145376, intron 9 of 13)	intron (NM_145376, intron 9 of 13)	-30874.0	NM_010020	13162.0	Mm.41993	NM_010020	ENSMUSG00000021609	Slc6a3	DAT|Dat1	solute carrier family 6 (neurotransmitter transporter, dopamine), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-55453825-4	chr11	55453749	55453949	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009720, intron 2 of 3)	intron (NM_009720, intron 2 of 3)	7359.0	NM_009720	11927.0	Mm.217759	NM_009720	ENSMUSG00000018585	Atox1	AI256639|Atx1	antioxidant 1 copper chaperone	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-22002079-3	chr11	22001963	22002163	+	808.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011023)	promoter-TSS (NM_011023)	-412.0	NM_011023	18423.0	Mm.129663	NM_011023	ENSMUSG00000005917	Otx1	A730044F23Rik|jv	orthodenticle homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171844364-4	chr1	171844278	171844478	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289470, intron 2 of 8)	intron (NM_001289470, intron 2 of 8)	4681.0	NM_013489	12523.0	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	1.87796515537653	1.9966637196426	3.01313970558348	1.02262199229785	1.89620845728801	1.09306041844049	2.91416245738935	1.02763380511598	-0.405170902896041	0.734353181061072	0.998431161219273
Merged-chr1-189799152-4	chr1	189799051	189799251	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008976, intron 3 of 18)	intron (NM_008976, intron 3 of 18)	70883.0	NM_008976	19250.0	Mm.4498	NM_008976	ENSMUSG00000026604	Ptpn14	C130080N23Rik|PTP36	protein tyrosine phosphatase, non-receptor type 14	protein-coding	4.92735410579623	4.30067586027548	4.6126292413902	4.96720509595509	4.99075681290091	4.18671858749994	4.54585387304805	4.95569388166791	-0.0207146393707959	0.955238674953491	0.998431161219273
Merged-chr18-67715282-2	chr18	67715188	67715388	+	553.5	f0_balb.idr|f1_balb.idr	intron (NM_008977, intron 1 of 9)	MTC|LTR|ERVL-MaLR	9333.0	NM_001127177	19255.0	Mm.260433	NM_008977	ENSMUSG00000024539	Ptpn2	AI325124|Ptpt|TC-PTP	protein tyrosine phosphatase, non-receptor type 2	protein-coding	2.03122219927877	2.40908008870145	2.32904584919163	2.37907981840862	2.16867052378142	2.94013914593073	1.68128837769208	2.67785148699768	0.375416017503187	0.65683155458447	0.988505467120973
Merged-chr16-60184035-2	chr16	60183935	60184135	+	653.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007938, intron 5 of 17)	Lx3A|LINE|L1	421496.0	NM_007938	13840.0	Mm.455790	NM_007938	ENSMUSG00000055540	Epha6	Ehk2|Hek12|m-ehk2	Eph receptor A6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-101940737-2	chr5	101940637	101940837	+	670.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 13 of 66)	intron (NM_172882, intron 13 of 66)	129184.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-30655860-4	chr10	30655759	30655959	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001111267)	promoter-TSS (NM_001111267)	8.0	NM_001111267	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-100125310-2	chr12	100125210	100125410	+	801.25	f1_balb.idr|f1_c57bl6.idr	TTS (NM_183155)	TTS (NM_183155)	12979.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76534153-4	chr15	76534055	76534255	+	851.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4591.0	NM_013909	30840.0	Mm.275279	NM_013909	ENSMUSG00000022559	Fbxl6	AU021795|Fbl6	F-box and leucine-rich repeat protein 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-108269438-3	chr5	108269328	108269528	+	893.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_026106, exon 1 of 3)	5' UTR (NM_026106, exon 1 of 3)	531.0	NM_026106	13486.0	Mm.303534	NM_026106	ENSMUSG00000029265	Dr1	1700121L09Rik|Dr1l|NC2|NC2beta	down-regulator of transcription 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-25261202-4	chr9	25261109	25261309	+	832.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359738, intron 1 of 12)	intron (NM_001359738, intron 1 of 12)	8317.0	NM_001359738	235072.0	Mm.270259	NM_009859	ENSMUSG00000001833	Sept7	Cdc10|E430034N22	septin 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-8981421-2	chr3	8981321	8981521	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	-17275.0	NM_001025261	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	-1.36015291771705	-1.32842431658676	-1.33874579108173	-1.34722415754512	-1.35969949349639	-1.32618761000664	-1.33640923549635	-0.791042329471244	2.42373733289067	0.484013421080845	1
Merged-chr19-5094459-4	chr19	5094445	5094645	+	931.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009920, intron 2 of 5)	intron (NM_009920, intron 2 of 5)	3976.0	NM_001302333	12794.0	Mm.299737	NM_009920	ENSMUSG00000024873	Cnih2	CNIH-2|Cnil	cornichon family AMPA receptor auxiliary protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-29812966-4	chr19	29812852	29813052	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177721)	promoter-TSS (NM_177721)	22.0	NM_177721	240614.0	Mm.125503	NM_177721	ENSMUSG00000074909	Ranbp6	C630001B19	RAN binding protein 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-37352123-2	chr6	37352023	37352223	+	991.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178661, intron 8 of 11)	intron (NM_178661, intron 8 of 11)	-52147.0	NM_001347104	320127.0	Mm.119469	NM_001081206	ENSMUSG00000038665	Dgki	6430604M11Rik|C130010K08Rik	diacylglycerol kinase, iota	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-37727571-2	chr3	37727471	37727671	+	601.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3211.0	NM_198657	381438.0	Mm.490549	NM_198657	ENSMUSG00000058174	Gm5148	EG381438	predicted gene 5148	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-25641899-2	chr15	25641799	25641999	+	672.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019472, intron 1 of 40)	B4A|SINE|B4	19349.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70768202-3	chr14	70768077	70768277	+	818.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1549.0	NM_023045	65246.0	Mm.152987	NM_023045	ENSMUSG00000022100	Xpo7	4930506C02Rik|BB164534|Ranbp16|exp7	exportin 7	protein-coding	1.64179812084182	1.25185282139546	1.88968335230452	0.805961532279647	1.25607772069304	0.835561214079939	0.820797339768428	1.66484634135943	-0.956851935223636	0.497797732091753	0.936897994490085
Merged-chr11-50275075-3	chr11	50274925	50275125	+	916.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175334, intron 1 of 4)	intron (NM_175334, intron 1 of 4)	17311.0	NM_175334	103806.0	Mm.51116	NM_175334	ENSMUSG00000050567	Maml1	AI644666|AW743257|D930008C07Rik|Mam-1|Mam1|mKIAA0200	mastermind like transcriptional coactivator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-16751721-4	chr10	16751623	16751823	+	827.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	344059.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135963637-4	chr4	135963531	135963731	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356493)	promoter-TSS (NM_001356493)	-94.0	NM_001356493	74246.0	Mm.247946	NM_178389	ENSMUSG00000028671	Gale	2310002A12Rik|AI323962	galactose-4-epimerase, UDP	protein-coding	5.30853324423354	4.57068494696389	3.30377826997692	5.14943867513323	4.9020845948779	3.79895400776762	4.22018350006595	4.85309851539402	-0.317992228806256	0.499262031873972	0.937522828426114
Merged-chr18-38286057-2	chr18	38285957	38286157	+	982.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1656.0	NM_017378	53601.0	Mm.12862	NM_017378	ENSMUSG00000024440	Pcdh12	Pcdh14|VE-cad-2	protocadherin 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-68873912-4	chr2	68873801	68874001	+	975.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347161, intron 1 of 10)	intron (NM_001347161, intron 1 of 10)	12460.0	NM_001347161	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-51586155-2	chr6	51586055	51586255	+	956.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361577, intron 5 of 6)	intron (NM_001361577, intron 5 of 6)	40862.0	NM_001361577	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-67087598-3	chr15	67087480	67087680	+	741.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1G3|LTR|ERVL-MaLR	89302.0	NM_009177	20442.0	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-142279410-2	chr3	142279310	142279510	+	662.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001190854, intron 7 of 12)	intron (NM_001190854, intron 7 of 12)	-109985.0	NM_001277216	12167.0	Mm.39089	NM_007560	ENSMUSG00000052430	Bmpr1b	AI385617|ALK-6|AV355320|Acvrlk6|Alk6|BMPR-1B|BMPR-IB|CFK-43a|SKR6	bone morphogenetic protein receptor, type 1B	protein-coding	2.87601527238966	2.30982330534495	2.75300202413671	2.57281140166801	2.89870960206976	2.7522247819924	2.77371391299615	2.58552743074796	0.216058912290142	0.758911108760815	0.998431161219273
Merged-chr10-62494937-2	chr10	62494837	62495037	+	736.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_011157, exon 3 of 3)	exon (NM_011157, exon 3 of 3)	-8132.0	NM_001358543	30930.0	Mm.260703	NM_133672	ENSMUSG00000020078	Vps26a	AA407240|HB58|Vps26	VPS26 retromer complex component A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4875191-2	chr16	4875091	4875291	+	893.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_145359, exon 3 of 3)	3' UTR (NM_145359, exon 3 of 3)	4660.0	NM_145359	207740.0	Mm.268895	NM_145359	ENSMUSG00000039568	Ubald1	1500031H01Rik|BC013706|Fam100a	UBA-like domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-63417291-2	chr10	63417191	63417391	+	617.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-12807.0	NM_177612	216033.0	Mm.444692	NM_177612	ENSMUSG00000060843	Ctnna3	4930429L08Rik|4933408A16|Catna3|Vr22	catenin (cadherin associated protein), alpha 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69605125-2	chr11	69605025	69605225	+	857.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013415, intron 1 of 6)	CpG	835.0	NM_013415	11932.0	Mm.235204	NM_013415	ENSMUSG00000041329	Atp1b2	Amog|Atpb-2	ATPase, Na+/K+ transporting, beta 2 polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-23869837-2	chr18	23869737	23869937	+	808.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162941, intron 5 of 7)	intron (NM_001162941, intron 5 of 7)	65867.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-23823919-1	chr17	23823819	23824019	+	1000.0	f1_balb.idr	TTS (NM_026305)	TTS (NM_026305)	628.0	NR_039586	100628593.0		NR_039586	ENSMUSG00000092981	Mir5125	mmu-mir-5125|mu-mir-5125	microRNA 5125	ncRNA	0.727461350300234	0.778130100722795	1.88819582052314	1.6445851466829	0.92356391825165	1.23187769630867	1.90584487417353	0.751404282228094	-0.25588014383077	0.860467540212169	0.998431161219273
Merged-chr18-56467356-4	chr18	56467281	56467481	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026240, intron 1 of 13)	intron (NM_026240, intron 1 of 13)	35249.0	NM_026240	107022.0	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|Gramd2b|NS3TP2	GRAM domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-43912979-2	chr1	43912879	43913079	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger17c|DNA|TcMar-Tigger	-21015.0	NM_001310540	22019.0	Mm.401675	NM_009418	ENSMUSG00000041763	Tpp2	TPP-2|TppII	tripeptidyl peptidase II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-105477546-1	chr4	105477446	105477646	+	596.0	f1_c57bl6.idr	Intergenic	Intergenic	320199.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	0.514201111153916	0.0540493502661153	0.724019269709352	0.582193760638194	0.0374815405564307	0.0553514142658477	0.0495440172698195	0.0445828027598977	-4.04263402766392	0.0595249304487478	1
Merged-chr14-79515676-4	chr14	79515592	79515792	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286412)	promoter-TSS (NM_001286412)	18.0	NM_001286411	13709.0	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5429576-4	chr17	5429466	5429666	+	991.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027457, intron 3 of 3)	intron (NM_027457, intron 3 of 3)	10694.0	NM_027457	70544.0	Mm.46654	NM_027457	ENSMUSG00000004945	Tmem242	1110008A10Rik|2310046K16Rik|5730437N04Rik	transmembrane protein 242	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-118556506-4	chr5	118556412	118556612	+	894.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4207.0	NM_001347445	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-113417755-3	chr13	113417658	113417858	+	868.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	85086.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-120505516-4	chr5	120505419	120505619	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1896.0	NM_023625	71772.0	Mm.100065	NM_023625	ENSMUSG00000029598	Plbd2	1300012G16Rik|AU019810|P76	phospholipase B domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-90602029-4	chr18	90601880	90602080	+	945.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22155.0	NM_001362365	108168395.0	Mm.391131	NM_001362365	ENSMUSG00000110277	Gm45871	-	predicted gene 45871	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-80965930-2	chr16	80965830	80966030	+	765.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	-234767.0	NM_001113208	17968.0	Mm.433941	NM_010954	ENSMUSG00000022762	Ncam2	Ncam-2|Ocam|RNCAM	neural cell adhesion molecule 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-85400652-4	chr9	85400569	85400769	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73519.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	3.58519670460576	3.07982523798493	4.43244462286653	4.26755747235351	4.47596643807365	4.98654130710803	3.67888231996683	4.33762182067879	0.657697241574328	0.176723126677635	0.646570188136342
Merged-chr14-30631842-1	chr14	30631742	30631942	+	561.0	f1_c57bl6.idr	Intergenic	Intergenic	-5634.0	NM_011103	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	1.42505424330059	0.735193885713181	0.717721761790644	2.10956466528124	1.32750569026402	0.73906231939696	1.8069457659591	0.706315999898081	-0.511100798865344	0.736891695164667	0.998431161219273
Merged-chr14-51088660-4	chr14	51088469	51088669	+	923.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2508.0	NM_001161731	11727.0	Mm.202665	NM_007447	ENSMUSG00000072115	Ang	AI385586|Ang1|Rnase5|Rnase5a	angiogenin, ribonuclease, RNase A family, 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69580839-3	chr11	69580797	69580997	+	952.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127233, intron 1 of 10)	intron (NM_001127233, intron 1 of 10)	538.0	NM_001127233	22059.0	Mm.222	NM_011640	ENSMUSG00000059552	Trp53	Tp53|bbl|bfy|bhy|p44|p53	transformation related protein 53	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-16016318-4	chr19	16016203	16016403	+	605.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31228.0	NR_045355	100502653.0	Mm.149980	NR_045355	ENSMUSG00000097557	C130060C02Rik	-	RIKEN cDNA C130060C02 gene	ncRNA	1.08993126093129	2.13132388954051	2.05683643413027	1.64905477324686	1.58249957226174	1.9078036869674	1.70710989428498	1.7877233272355	-0.154057904651815	0.886542019157923	0.998431161219273
Merged-chr3-108018583-1	chr3	108018483	108018683	+	710.666687	f0_balb.idr	promoter-TSS (NM_010358)	promoter-TSS (NM_010358)	-610.0	NM_010358	14862.0	Mm.37199	NM_010358	ENSMUSG00000058135	Gstm1	Gstb-1|Gstb1	glutathione S-transferase, mu 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-4498400-4	chr7	4498300	4498500	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029834, intron 1 of 21)	intron (NM_029834, intron 1 of 21)	3280.0	NM_029834	232807.0	Mm.360391	NM_029834	ENSMUSG00000019254	Ppp1r12c	2410197A17Rik|AI839747|B430101M08|Mbs85	protein phosphatase 1, regulatory (inhibitor) subunit 12C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-73688235-2	chr12	73688135	73688335	+	990.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008856, intron 2 of 13)	intron (NM_008856, intron 2 of 13)	103439.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120486596-4	chr8	120486525	120486725	+	814.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2241.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-142460743-4	chr7	142460748	142460948	+	998.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271509)	promoter-TSS (NM_001271509)	36.0	NM_001136071	16985.0	Mm.234003	NM_019391	ENSMUSG00000018819	Lsp1	Lsp-1|WP34|p50|pp52	lymphocyte specific 1	protein-coding	2.38473678027806	2.43796054320115	2.07306270812753	2.98813545915955	1.93495516771734	2.79354216532305	2.3752598830652	2.02738067147158	-0.429080575771762	0.6024886195744	0.973565005745828
Merged-chr6-125516113-4	chr6	125516015	125516215	+	854.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21355.0	NM_007657	12527.0	Mm.210676	NM_007657	ENSMUSG00000030342	Cd9	Tspan29	CD9 antigen	protein-coding	1.60166248854698	3.1411636367333	2.16463444259362	2.5365249523955	2.81384195330903	2.26355424717469	2.63674888806655	3.94015264508468	1.11966281176572	0.168852719897656	0.63531908954007
Merged-chr3-9067281-4	chr3	9067184	9067384	+	811.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040597, intron 2 of 2)	intron (NR_040597, intron 2 of 2)	5320.0	NR_040597	75149.0	Mm.399324	NR_040597	ENSMUSG00000103116	4930539M17Rik	-	RIKEN cDNA 4930539M17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-48840489-4	chr6	48840372	48840572	+	982.857178	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_023056, exon 1 of 7)	5' UTR (NM_023056, exon 1 of 7)	516.0	NM_023056	65963.0	Mm.28385	NM_023056	ENSMUSG00000029810	Tmem176b	1810009M01Rik|Clast1|Lr8	transmembrane protein 176B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-55526675-4	chr16	55526570	55526770	+	998.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31939.0	NR_039578	100628589.0		NR_039578	ENSMUSG00000093292	Mir5118	mmu-mir-5118|mu-mir-5118	microRNA 5118	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-46162275-2	chr17	46162175	46162375	+	866.5	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001357745, exon 1 of 12)	5' UTR (NM_001357745, exon 1 of 12)	211.0	NM_001357745	56055.0	Mm.22147	NM_019581	ENSMUSG00000023952	Gtpbp2	nmf205	GTP binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-78402497-2	chr17	78402397	78402597	+	619.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360407, intron 4 of 9)	MLT1B|LTR|ERVL-MaLR	15655.0	NM_001285949	225020.0	Mm.236835	NM_199448	ENSMUSG00000056121	Fez2	9030616F16|D17Ertd315e	fasciculation and elongation protein zeta 2 (zygin II)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-10902659-3	chr8	10902559	10902759	+	879.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_102285)	TTS (NR_102285)	2737.0	NR_102285	71624.0	Mm.139075	NR_102285	ENSMUSG00000109089	4833411C07Rik	-	RIKEN cDNA 4833411C07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-23886873-5	chr18	23886699	23886899	+	703.133301	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162941, intron 7 of 7)	intron (NM_001162941, intron 7 of 7)	-67889.0	NM_027007	69256.0	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-95820743-3	chr15	95820643	95820843	+	898.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 1 of 19)	intron (NM_175344, intron 1 of 19)	9329.0	NR_155277	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-103725506-2	chr5	103725406	103725606	+	942.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28656.0	NM_133919	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-63315998-2	chr15	63315898	63316098	+	673.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	163610.0	NR_045279	432958.0	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-124071890-4	chr1	124071791	124071991	+	934.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26332.0	NM_199021	269109.0	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	2.71170853541697	2.59510587212859	3.01621563518764	2.44233356556796	2.45257687864101	2.61362030470915	3.03880946919524	2.45446890231913	-0.0960493103255783	0.893620576719389	0.998431161219273
Merged-chr15-57974879-2	chr15	57974779	57974979	+	658.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11024.0	NM_173862	239463.0	Mm.221241	NM_173862	ENSMUSG00000051225	Fam83a	-	family with sequence similarity 83, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-103406026-4	chr11	103405916	103406116	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183034, intron 1 of 11)	intron (NM_183034, intron 1 of 11)	6648.0	NM_183034	353047.0	Mm.18556	NM_183034	ENSMUSG00000034247	Plekhm1	AP162|B2|BC038943|D330036J23Rik	pleckstrin homology domain containing, family M (with RUN domain) member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-32611585-4	chr5	32611485	32611685	+	905.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_009535, exon 1 of 12)	5' UTR (NM_009535, exon 1 of 12)	414.0	NM_009535	22612.0	Mm.4558	NM_009535	ENSMUSG00000014932	Yes1	Yes|p61-Yes	YES proto-oncogene 1, Src family tyrosine kinase	protein-coding	1.55847018110014	1.51220107969606	1.58592370492003	1.54006074178498	1.36304763165178	1.65657649602582	0.957420773806174	1.13404632695997	-0.925162054149437	0.441635751453617	0.910854758069075
Merged-chr2-118587842-4	chr2	118587747	118587947	+	851.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR17|LTR|ERVK	-10364.0	NM_009773	12236.0	Mm.29133	NM_009773	ENSMUSG00000040084	Bub1b	AU045529|BUBR1	BUB1B, mitotic checkpoint serine/threonine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-15201176-1	chr14	15201076	15201276	+	717.333313	f0_c57.idr	Intergenic	Intergenic	-236447.0	NR_152122	77981.0	Mm.138039	NM_001033183		B230110C06Rik	-	RIKEN cDNA B230110C06 gene	ncRNA	-0.859082918983678	-0.988263333422384	-1.00040322824838	-1.00311683473178	-1.00626376281094	-0.985632567570811	-0.997655022158689	-0.350334081862082	2.02436496650785	0.517018710074872	1
Merged-chr1-163403735-4	chr1	163403643	163403843	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_132627)	promoter-TSS (NR_132627)	-74.0	NM_178883	98376.0	Mm.32901	NM_178883	ENSMUSG00000040124	Gorab	NTKL-BP1|SCYL1-BP1|Scyl1bp1	golgin, RAB6-interacting	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91729217-4	chr16	91729124	91729324	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133679)	promoter-TSS (NM_133679)	-147.0	NM_001110275	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	3.88881567478959	3.30915541741182	3.97876992208658	2.8626875737744	4.28651866948631	3.08812094908626	2.50482215630993	4.19639773159906	0.210775991505168	0.732360817094844	0.998431161219273
Merged-chr17-5576897-4	chr17	5576810	5577010	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	84310.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167001111-4	chr2	167001012	167001212	+	869.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER2|LTR|ERV1	-4813.0	NM_001109905	20853.0	Mm.73276	NM_011490	ENSMUSG00000039536	Stau1	5830401L18Rik|AW549911|C85792|Stau	staufen double-stranded RNA binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-11189341-2	chr2	11189241	11189441	+	790.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008859, intron 1 of 17)	B3A|SINE|B2	16959.0	NM_008859	18761.0	Mm.329993	NM_008859	ENSMUSG00000026778	Prkcq	A130035A12Rik|AW494342|PKC-0|PKC-theta|PKCtheta|Pkcq	protein kinase C, theta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-24559400-3	chr18	24559290	24559490	+	826.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29186.0	NM_001360807	225283.0	Mm.28427	NM_144861	ENSMUSG00000040446	Rprd1a	C77387|mKIAA4077	regulation of nuclear pre-mRNA domain containing 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-153827912-3	chr4	153827813	153828013	+	759.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	122563.0	NR_040670	407793.0	Mm.260950	NR_040670		BC039966	-	cDNA sequence BC039966	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-39802264-4	chr18	39802151	39802351	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28754.0	NM_011033	18459.0	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-71140731-2	chr9	71140631	71140831	+	810.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_073483, intron 1 of 6)	intron (NR_073483, intron 1 of 6)	21902.0	NM_001271843	64008.0	Mm.449427	NM_022026	ENSMUSG00000032204	Aqp9	1700020I22Rik|AI266899|AQP-9	aquaporin 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97426618-2	chr6	97426518	97426718	+	915.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	32668.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-47787733-1	chr9	47787633	47787833	+	543.0	f0_balb.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	30475.0	NR_046048	100038460.0	Mm.447649	NR_046048		Gm10677	-	predicted gene 10677	ncRNA	0.978549653597647	1.06369795974124	2.18556707939751	1.89906653637282	1.80798643215282	2.6472619973234	1.04301351374688	2.12930486595459	1.00144136456537	0.411840496452135	0.894597257730009
Merged-chr18-34495931-1	chr18	34495831	34496031	+	669.0	f1_c57bl6.idr	intron (NM_146084, intron 4 of 20)	B4A|SINE|B4	10892.0	NM_146084	225358.0	Mm.226899	NM_146084	ENSMUSG00000036501	Fam13b	2610024E20Rik|AW060714|AW546153	family with sequence similarity 13, member B	protein-coding	-0.773269170465148	-0.536731853074065	-1.03283113491845	-1.03706869426034	-1.03996662017948	-1.01870368359699	-1.03020260335842	-1.0367099657609	-2.78541583542897	0.373634043026092	1
Merged-chr16-23107403-4	chr16	23107298	23107498	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001123037)	promoter-TSS (NM_001123037)	-70.0	NR_152586	13682.0	Mm.260084	NM_013506	ENSMUSG00000022884	Eif4a2	4833432N07Rik|BM-010|Ddx2b|Eif4|eIF-4A-II|eIF4A-II	eukaryotic translation initiation factor 4A2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-14020459-3	chr10	14020343	14020543	+	885.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358783, intron 2 of 12)	intron (NM_001358783, intron 2 of 12)	54064.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	1.65100729722593	1.74138754492181	1.89984740454372	1.19983380211104	1.84453298869606	1.26603869248549	1.01795565671246	1.64083206941702	-0.522051993647381	0.657610461071938	0.988704682801132
Merged-chr19-32960798-4	chr19	32960652	32960852	+	871.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-196360.0	NR_039552	100628575.0		NR_039552	ENSMUSG00000106278	Mir3970	mmu-mir-3970|mu-mir-3970	microRNA 3970	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133221596-1	chr4	133221496	133221696	+	586.0	f1_c57bl6.idr	exon (NM_027152, exon 2 of 6)	exon (NM_027152, exon 2 of 6)	787.0	NM_027152	69655.0	Mm.285685	NM_027152	ENSMUSG00000028865	Cd164l2	2310047N01Rik	CD164 sialomucin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-102250748-4	chr7	102250649	102250849	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019566)	promoter-TSS (NM_019566)	-631.0	NM_019566	56212.0	Mm.259795	NM_019566	ENSMUSG00000073982	Rhog	2810426G09Rik|Arhg|Sid10750	ras homolog family member G	protein-coding	5.87911417191279	6.30690743468698	5.96255767968233	6.24024397241771	5.8130222269259	5.77606073549936	6.2676039911737	5.34882426292822	-0.29584458737033	0.24645354790998	0.74563204527445
Merged-chr7-105377305-2	chr7	105377205	105377405	+	640.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001195727, exon 2 of 3)	exon (NM_001195727, exon 2 of 3)	2267.0	NM_001329995	100503879.0	Mm.380109	NM_001195727	ENSMUSG00000078611	Gm5901	EG545989	predicted gene 5901	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117824424-4	chr10	117824314	117824514	+	826.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024457, intron 2 of 7)	ID_B1|SINE|B4	21560.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-48124486-3	chr4	48124375	48124575	+	946.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026343)	promoter-TSS (NM_026343)	-444.0	NM_026343	67727.0	Mm.171334	NM_026343	ENSMUSG00000061455	Stx17	4833418L03Rik|6330411F21Rik|9030425C21Rik|AW048351	syntaxin 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-47053537-5	chr7	47053459	47053659	+	817.293335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026436, exon 3 of 3)	exon (NM_026436, exon 3 of 3)	2919.0	NM_026436	67893.0	Mm.27338	NM_026436	ENSMUSG00000010307	Tmem86a	1810054O13Rik|AI414959|AW742698	transmembrane protein 86A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150855046-4	chr4	150854945	150855145	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040649)	promoter-TSS (NR_040649)	-25.0	NM_133753	74155.0	Mm.318841	NM_133753	ENSMUSG00000028967	Errfi1	1300002F13Rik|AI788755|Mig-6|Mig6|RALT	ERBB receptor feedback inhibitor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-5715482-2	chr2	5715382	5715582	+	674.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177343)	promoter-TSS (NM_177343)	-720.0	NM_177343	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-127722630-1	chr2	127722530	127722730	+	563.0	f1_c57bl6.idr	intron (NM_145532, intron 1 of 3)	intron (NM_145532, intron 1 of 3)	7267.0	NM_145532	228576.0	Mm.133036	NM_145532	ENSMUSG00000027377	Mall	BC012256|BENE	mal, T cell differentiation protein-like	protein-coding	-0.539072095141396	-1.17607782048307	-1.18720726126045	-1.19634931528472	-1.20196491063698	-1.17366602423904	-1.18468779981884	-1.19471289198531	-2.68787187143179	0.435473844436726	1
Merged-chr11-37236225-2	chr11	37236125	37236325	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-291984.0	NM_011856	23964.0	Mm.439889	NM_011856	ENSMUSG00000049336	Tenm2	Odz2|Odz3|Ten-2|Ten-m2	teneurin transmembrane protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-36032756-4	chr17	36032654	36032854	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010398)	promoter-TSS (NM_010398)	-53.0	NM_010398	15040.0	Mm.439648	NM_010398	ENSMUSG00000067212	H2-T23	37b|37c|H-2T23|H2-Qa1|Qa-1|Qa-1(b)|Qa1|Qed-1|T18c|T18c(37)|T23b|T23d	histocompatibility 2, T region locus 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165949840-4	chr2	165949758	165949958	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42779.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-123282701-4	chr4	123282617	123282817	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356377)	promoter-TSS (NM_001356377)	-194.0	NM_148917	230721.0	Mm.277091	NM_130881	ENSMUSG00000011257	Pabpc4	-	poly(A) binding protein, cytoplasmic 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-42150036-2	chr19	42149936	42150136	+	972.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_183195, intron 1 of 1)	intron (NM_183195, intron 1 of 1)	2647.0	NM_183195	277010.0	Mm.206250	NM_183195	ENSMUSG00000044345	Marveld1	AI504298|Mrvldc1	MARVEL (membrane-associating) domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-86999235-4	chr3	86999133	86999333	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007639, exon 1 of 6)	exon (NM_007639, exon 1 of 6)	107.0	NM_007639	12479.0	Mm.1894	NM_007639	ENSMUSG00000028076	Cd1d1	AI747460|CD1.1|Cd1a|Cd1d|Ly-38	CD1d1 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10691499-2	chr19	10691399	10691599	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361958, intron 1 of 4)	L1MEc|LINE|L1	2764.0	NM_001361959	107305.0	Mm.19091	NM_181403	ENSMUSG00000048832	Vps37c	5730409F24Rik|AU042646	vacuolar protein sorting 37C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-124775865-4	chr2	124775637	124775837	+	936.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	122156.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99123426-2	chr15	99123326	99123526	+	833.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F1|SINE|Alu	-3419.0	NM_139140	72572.0	Mm.276650	NM_139140	ENSMUSG00000051934	Spats2	2700012F11Rik|59kDa|Scr59|p59	spermatogenesis associated, serine-rich 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19751192-2	chr7	19751092	19751292	+	998.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1619.0	NM_001159724	19294.0	Mm.4341	NM_008990	ENSMUSG00000062300	Nectin2	AI325026|AI987993|Cd112|MPH|Pvr|Pvrl2|Pvs|nectin-2	nectin cell adhesion molecule 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97972017-3	chr6	97971916	97972116	+	902.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001178049, intron 2 of 9)	B4A|SINE|B4	-19767.0	NM_008601	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-44527299-4	chr10	44527230	44527430	+	869.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68582.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128751696-2	chr2	128751596	128751796	+	806.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 5 of 18)	URR1B|DNA|hAT-Charlie	52781.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-157635859-4	chr3	157635766	157635966	+	990.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011196, intron 2 of 2)	intron (NM_011196, intron 2 of 2)	68974.0	NM_011196	19218.0	Mm.30424	NM_011196	ENSMUSG00000040016	Ptger3	EP3|Pgerep3|Ptgerep3	prostaglandin E receptor 3 (subtype EP3)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4893677-4	chr16	4893556	4893756	+	902.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357062, intron 1 of 17)	intron (NM_001357062, intron 1 of 17)	7556.0	NM_001357061	17237.0	Mm.291326	NM_029657	ENSMUSG00000022517	Mgrn1	2610042J20Rik|mKIAA0544|md|nc	mahogunin, ring finger 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-92980973-4	chr7	92980864	92981064	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-98915.0	NM_021427	58238.0	Mm.113787	NM_021427	ENSMUSG00000051515	Fam181b	A830059I20Rik|AB041569	family with sequence similarity 181, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-51477517-4	chr17	51477422	51477622	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_037268, intron 3 of 4)	intron (NR_037268, intron 3 of 4)	-29253.0	NR_046166	328837.0	Mm.236143	NR_046166		C330011F03Rik	C330011F03	RIKEN cDNA C330011F03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-3031268-2	chr9	3031171	3031371	+	617.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	GSAT_MM|Satellite|Satellite	7472.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-90240986-2	chr9	90240886	90241086	+	947.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 3 of 12)	intron (NM_194334, intron 3 of 12)	29783.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-100403113-4	chr13	100403011	100403211	+	934.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49753.0	NM_008670	17940.0	Mm.6898	NM_008670	ENSMUSG00000021640	Naip1	AV364616|Birc1a|D13Lsd1|Naip|Naip-rs1	NLR family, apoptosis inhibitory protein 1	protein-coding	2.63402630072941	2.67952954492918	2.66131045809267	2.32383948979883	0.995273799160515	1.39963398695825	1.07006908054093	1.04036882255345	-5.10130483721655	6.46041085767714e-05	0.00216513992934107
Merged-chr17-33811321-2	chr17	33811221	33811421	+	788.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_030697, intron 1 of 10)	intron (NM_030697, intron 1 of 10)	798.0	NM_030697	80880.0	Mm.196330	NM_030697	ENSMUSG00000042099	Kank3	0610013D04Rik|Ankrd47|D17Ertd288e|NG28	KN motif and ankyrin repeat domains 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-41238817-2	chr13	41238717	41238917	+	666.700012	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CAAA)n|Simple_repeat|Simple_repeat	-11027.0	NM_001135577	108934.0	Mm.38578	NM_001135577	ENSMUSG00000091264	Smim13	2900036K02Rik	small integral membrane protein 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-113036090-4	chr13	113036001	113036201	+	965.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_030452)	TTS (NR_030452)	118.0	NR_030452	735309.0		NR_030452	ENSMUSG00000076146	Mir449c	Mirn449b|Mirn449c|mir-449c	microRNA 449c	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-116727440-4	chr10	116727370	116727570	+	930.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045345, intron 1 of 2)	L1MDa|LINE|L1	1707.0	NR_045345	72286.0	Mm.396207	NR_045345	ENSMUSG00000100198	1700030O20Rik	-	RIKEN cDNA 1700030O20 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81536091-5	chr15	81536018	81536218	+	992.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50096.0	NM_177821	328572.0	Mm.258397	NM_177821	ENSMUSG00000055024	Ep300	A430090G16|A730011L11|KAT3B|p300|p300 HAT	E1A binding protein p300	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-25623917-2	chr2	25623817	25624017	+	560.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_007995)	TTS (NM_007995)	-1912.0	NM_001109993	51875.0	Mm.271147	NM_001040130	ENSMUSG00000026939	Tmem141	1110065P14Rik|AI663999|D2Ertd217e	transmembrane protein 141	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106487890-4	chr11	106487778	106487978	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023913)	promoter-TSS (NM_023913)	-82.0	NM_023913	78943.0	Mm.340943	NM_023913	ENSMUSG00000020715	Ern1	9030414B18Rik|AI225830|C85377|Ire1a|Ire1alpha|Ire1p	endoplasmic reticulum (ER) to nucleus signalling 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-98880300-4	chr10	98880196	98880396	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34346.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-17014045-2	chr11	17013945	17014145	+	937.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2B|LINE|L1	-5327.0	NM_019549	56193.0	Mm.98232	NM_019549	ENSMUSG00000020120	Plek	2010300B13Rik	pleckstrin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-150674370-4	chr5	150674208	150674408	+	961.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175310, intron 1 of 34)	CpG	481.0	NM_001346503	100710.0	Mm.32959	NM_175310	ENSMUSG00000034021	Pds5b	AI646570|AS3|AW212954|Aprin|Tg(Wap-ERBB2)229Wzw|WAP-Her-2|mKIAA0979	PDS5 cohesin associated factor B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-8169045-4	chr15	8168933	8169133	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162906)	promoter-TSS (NM_001162906)	-73.0	NM_001162906	73692.0	Mm.164436	NM_001162906	ENSMUSG00000039801	2410089E03Rik	4732468D17Rik|Hug|Jbts17|b2b012Clo	RIKEN cDNA 2410089E03 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-143738897-4	chr1	143738765	143738965	+	845.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023505)	promoter-TSS (NM_023505)	-484.0	NM_001038593	69367.0	Mm.272727	NM_023505	ENSMUSG00000018196	Glrx2	1700010P22Rik|AI645710|Grx2	glutaredoxin 2 (thioltransferase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-44067473-4	chr19	44067360	44067560	+	995.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145502, intron 2 of 10)	intron (NM_145502, intron 2 of 10)	2226.0	NM_145502	226144.0	Mm.279865	NM_145502	ENSMUSG00000025198	Erlin1	2810439N09Rik|C80197|Keo4|Spfh1	ER lipid raft associated 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-34416769-4	chr10	34416680	34416880	+	784.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176968, intron 1 of 11)	intron (NM_176968, intron 1 of 11)	1771.0	NM_176968	319638.0	Mm.73467	NM_176968	ENSMUSG00000039480	Nt5dc1	6030401B09Rik|AW987726|Nt5c2l1	5'-nucleotidase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-15995702-4	chr4	15995591	15995791	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_145950)	TTS (NM_145950)	18147.0	NM_001355615	209212.0	Mm.46455	NM_145950	ENSMUSG00000041153	Osgin2	BC010311|C230027H09Rik	oxidative stress induced growth inhibitor family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-105214314-5	chr13	105214226	105214426	+	765.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360891, intron 5 of 7)	L1MA7|LINE|L1	78688.0	NM_027934	71816.0	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-13799058-2	chr6	13798958	13799158	+	748.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40884.0	NM_001330666	64450.0	Mm.167625	NM_145066	ENSMUSG00000048216	Gpr85	2900026B03Rik	G protein-coupled receptor 85	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134830110-4	chr6	134830013	134830213	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177687)	promoter-TSS (NM_177687)	-86.0	NM_177687	232430.0	Mm.267010	NM_177687	ENSMUSG00000032652	Crebl2	AI046348|B230205M03	cAMP responsive element binding protein-like 2	protein-coding	5.93000226561004	6.08379407790526	6.28454733810795	6.00353698438788	6.06461286378305	6.50628302739149	6.45240954719909	6.0092593678629	0.207570638309013	0.357228304244759	0.853959579582101
Merged-chr16-23296985-4	chr16	23296889	23297089	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252506, intron 1 of 6)	intron (NM_001252506, intron 1 of 6)	6519.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-77460028-4	chr5	77459914	77460114	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5474.0	NR_131050	69370.0	Mm.426881	NR_131050	ENSMUSG00000107232	1700017L05Rik	-	RIKEN cDNA 1700017L05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-144001531-4	chr1	144001383	144001583	+	998.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009061, exon 5 of 5)	3' UTR (NM_009061, exon 5 of 5)	2666.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118618586-2	chr9	118618486	118618686	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 1 of 27)	intron (NM_133721, intron 1 of 27)	11877.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30246007-4	chr2	30245881	30246081	+	874.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177725, intron 2 of 3)	intron (NM_177725, intron 2 of 3)	8212.0	NM_177725	241296.0	Mm.389232	NM_177725	ENSMUSG00000007476	Lrrc8a	Lrrc8|mKIAA1437	leucine rich repeat containing 8A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-14577121-4	chr1	14577026	14577226	+	983.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	178840.0	NM_001360810	17681.0	Mm.5820	NM_010827	ENSMUSG00000025930	Msc	MyoR|bHLHa22	musculin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100992151-4	chr7	100992039	100992239	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19859.0	NM_001302347	18442.0	Mm.3000	NM_008773	ENSMUSG00000032860	P2ry2	P2U1|P2Y2	purinergic receptor P2Y, G-protein coupled 2	protein-coding	4.66623595644795	4.25302640824714	4.73296598996502	4.92855825679712	5.25407546919843	4.35574538606974	4.76710033492997	5.75113560906795	0.567140398868316	0.136010145765559	0.57583879950369
Merged-chr15-76510968-2	chr15	76510868	76511068	+	697.700012	f1_balb.idr|f1_c57bl6.idr	intron (NM_010046, intron 1 of 16)	intron (NM_010046, intron 1 of 16)	1026.0	NM_010046	13350.0	Mm.22633	NM_010046	ENSMUSG00000022555	Dgat1	ARAT|C75990|D15Ertd23e|Dgat	diacylglycerol O-acyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-134574259-2	chr5	134574159	134574359	+	720.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	2183.0	NR_106087	102465708.0		NR_106087	ENSMUSG00000106323	Mir7228	mmu-mir-7228	microRNA 7228	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-38396038-4	chr19	38395938	38396138	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175507)	promoter-TSS (NM_175507)	58.0	NM_175507	240660.0	Mm.262085	NM_175507	ENSMUSG00000044026	Slc35g1	AA590464|D330039I19Rik|Tmem20	solute carrier family 35, member G1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-83878359-4	chr7	83878246	83878446	+	931.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5995.0	NM_030705	80889.0	Mm.272998	NM_030705	ENSMUSG00000070462	Tlnrd1	AW061151|Mesdc1	talin rod domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-24830933-2	chr13	24830833	24831033	+	885.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019551)	promoter-TSS (NM_019551)	556.0	NM_025790	66834.0	Mm.2125	NM_025790	ENSMUSG00000006717	Acot13	0610006O17Rik|Them2	acyl-CoA thioesterase 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81290663-2	chr10	81290563	81290763	+	907.900024	f1_balb.idr|f1_c57bl6.idr	intron (NM_001282095, intron 1 of 20)	intron (NM_001282095, intron 1 of 20)	604.0	NM_013769	27375.0	Mm.27984	NM_013769	ENSMUSG00000034917	Tjp3	-	tight junction protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-55215336-3	chr11	55215235	55215435	+	914.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153139, intron 2 of 10)	intron (NM_153139, intron 2 of 10)	10995.0	NM_153139	215335.0	Mm.35732	NM_153139	ENSMUSG00000020261	Slc36a1	5830411H19Rik|AI839897|Pat1	solute carrier family 36 (proton/amino acid symporter), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-70855334-2	chr17	70855208	70855408	+	692.099976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1776.0	NM_001164074	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-62503517-2	chr4	62503417	62503617	+	964.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1317.0	NM_024257	72748.0	Mm.41506	NM_024257	ENSMUSG00000038422	Hdhd3	2810435D12Rik	haloacid dehalogenase-like hydrolase domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10905488-4	chr19	10905387	10905587	+	939.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001253844, exon 14 of 14)	3' UTR (NM_001253844, exon 14 of 14)	6842.0	NM_001253844	28000.0	Mm.491104	NM_134129	ENSMUSG00000024735	Prpf19	AA617263|AL024362|D19Wsu55e|NMP200|PSO4|Prp19|Snev	pre-mRNA processing factor 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-62719438-2	chr1	62719338	62719538	+	850.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077404, intron 2 of 16)	L3|LINE|CR1	16121.0	NM_001077407	18187.0	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-103172730-2	chr15	103172630	103172830	+	785.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9446.0	NM_027885	71726.0	Mm.254820	NM_027885	ENSMUSG00000036061	Smug1	1200013B09Rik|A930006H09Rik|C85220	single-strand selective monofunctional uracil DNA glycosylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-66872771-4	chr14	66872678	66872878	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3928.0	NM_001034881	432870.0	Mm.425890	NM_001034881	ENSMUSG00000075553	Gm5464	EG432870	predicted gene 5464	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-135174457-1	chr6	135174357	135174557	+	634.0	f1_c57bl6.idr	Intergenic	MER5A|DNA|hAT-Charlie	-6242.0	NM_013546	15199.0	Mm.378937	NM_013546	ENSMUSG00000042770	Hebp1	Hebp|p22HBP	heme binding protein 1	protein-coding	0.985944154752859	1.17998590165008	0.439791039606126	2.48518650820542	0.834332236226493	0.463987262525156	0.444239855134866	0.426700029303752	-3.76196959651275	0.0223044600348637	0.193359040099924
Merged-chr7-34448548-4	chr7	34448442	34448642	+	995.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58837.0	NM_025948	67070.0	Mm.276503	NM_025948	ENSMUSG00000066568	Lsm14a	2700023B17Rik|AA407828|AU017544|Tral|mRAP55A	LSM14A mRNA processing body assembly factor	protein-coding	-0.914587585352826	-1.14968844836017	-1.16012564310979	-1.16869906563582	-0.801023986531728	-1.14742666471813	-1.15776289099527	-1.16716442710272	0.46649237519341	0.890119923761052	1
Merged-chr14-61676106-4	chr14	61676012	61676212	+	917.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028264, intron 1 of 6)	intron (NR_028264, intron 1 of 6)	6261.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-72495369-2	chr8	72495217	72495417	+	564.416626	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_027485, exon 3 of 3)	3' UTR (NM_027485, exon 3 of 3)	-2703.0	NM_177766	270066.0	Mm.291461	NM_177766	ENSMUSG00000019731	Slc35e1	6030458H05|AA408278	solute carrier family 35, member E1	protein-coding	2.04452087798751	1.71550941619788	0.788626949124246	0.774215648955958	1.70026833383929	1.73090097154466	0.792684796219082	0.776758221803473	-0.393429258073754	0.792655114546873	0.998431161219273
Merged-chr4-45530861-4	chr4	45530765	45530965	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033306)	promoter-TSS (NM_001033306)	-37.0	NM_001033306	230126.0	Mm.251716	NM_001033306	ENSMUSG00000044813	Shb	BC028832	src homology 2 domain-containing transforming protein B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-132804185-4	chr7	132804087	132804287	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_212473, intron 1 of 4)	intron (NM_212473, intron 1 of 4)	9009.0	NM_212473	77938.0	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-32715357-4	chr19	32715272	32715472	+	953.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	-3074.0	NM_026487	67979.0	Mm.27123	NM_026487	ENSMUSG00000013662	Atad1	4921525H23Rik|AW107648|Thorase	ATPase family, AAA domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-137350917-1	chr4	137350817	137351017	+	1000.0	f1_balb.idr	intron (NM_009861, intron 1 of 5)	B3|SINE|B2	6842.0	NM_009861	12540.0	Mm.1022	NM_009861	ENSMUSG00000006699	Cdc42	AI747189|AU018915	cell division cycle 42	protein-coding	0.510147587056624	0.120820359697534	1.02199574261915	0.108008369796739	0.100033083209271	0.122438306301994	0.740761787460248	0.108989385152882	-1.18644860866285	0.575113459803033	1
Merged-chr18-70642755-2	chr18	70642655	70642855	+	746.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	74463.0	NM_010773	17191.0	Mm.322	NM_010773	ENSMUSG00000024513	Mbd2	MBD2a	methyl-CpG binding domain protein 2	protein-coding	-0.171280691871971	-0.323835153334598	-0.330038309556688	-0.334873919965722	-0.341784096845646	-0.0908495775875189	0.814402066183944	-0.334025958998083	3.19207250226581	0.171843991687647	1
Merged-chr16-33933474-4	chr16	33933366	33933566	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 10 of 14)	intron (NM_001145884, intron 10 of 14)	33572.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-33316637-4	chr12	33316520	33316720	+	965.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033436, intron 1 of 7)	intron (NM_001033436, intron 1 of 7)	14105.0	NM_001033436	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-55395247-2	chr11	55395147	55395347	+	741.166687	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001290817, exon 10 of 10)	3' UTR (NM_001290817, exon 10 of 10)	24833.0	NM_009242	20692.0	Mm.291442	NM_009242	ENSMUSG00000018593	Sparc	BM-40|ON	secreted acidic cysteine rich glycoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30828358-4	chr2	30828258	30828458	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133346)	promoter-TSS (NM_133346)	-58.0	NM_133346	72323.0	Mm.27656	NM_133346	ENSMUSG00000039483	Asb6	2510004M11Rik|AA409356	ankyrin repeat and SOCS box-containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-29269369-2	chr6	29269269	29269469	+	638.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MEd|LINE|L1	-3119.0	NM_001190461	69573.0	Mm.45161	NM_023516	ENSMUSG00000043421	Hilpda	2310016C08Rik|AW049004|Hig2	hypoxia inducible lipid droplet associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-43321662-4	chr1	43321567	43321767	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-124084.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-136722142-1	chr6	136722042	136722242	+	582.0	f1_balb.idr	intron (NM_145067, intron 16 of 25)	B3|SINE|B2	59600.0	NM_145067	14917.0	Mm.222729	NM_145067	ENSMUSG00000042638	Gucy2c	AI893437|GC-C|Gcc	guanylate cyclase 2c	protein-coding	1.18429766088326	1.32865248644771	1.01808120561037	2.55022384867139	1.38633501821315	1.33852645673478	2.32420886765565	2.69554540366876	0.898306243397382	0.43685922102374	0.908362185228875
Merged-chr13-104918916-2	chr13	104918816	104919016	+	598.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55023.0	NM_029984	77803.0	Mm.159995	NM_029984	ENSMUSG00000042655	Fam159b	A930021C24Rik|Shisal2b	family with sequence similarity 159, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-72485650-2	chr8	72485560	72485760	+	861.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177766, intron 4 of 5)	B4A|SINE|B4	6954.0	NM_177766	270066.0	Mm.291461	NM_177766	ENSMUSG00000019731	Slc35e1	6030458H05|AA408278	solute carrier family 35, member E1	protein-coding	1.56326672413582	1.88666946127748	1.12629063868126	2.01020508473023	1.35296771751217	0.92993012378171	1.47105887451017	0.899444958995922	-1.83296916855303	0.150670715242419	0.602589676101411
Merged-chr17-64726185-2	chr17	64726085	64726285	+	630.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008549, intron 16 of 21)	intron (NM_008549, intron 16 of 21)	-40926.0	NR_105051	101202683.0	Mm.393309	NR_105051		Dreh	-	down-regulated in hepatocellular carcinoma	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-69106173-3	chr17	69106062	69106262	+	710.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355732, intron 1 of 21)	intron (NM_001355732, intron 1 of 21)	30485.0	NM_001355732	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-20731997-2	chr14	20731897	20732097	+	813.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010811, intron 2 of 14)	B3|SINE|B2	2565.0	NM_010811	17423.0	Mm.4084	NM_010811	ENSMUSG00000039308	Ndst2	Mndns|NDST-2	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-29794764-4	chr6	29794685	29794885	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001171000, intron 1 of 16)	intron (NM_001171000, intron 1 of 16)	26342.0	NM_001171000	74340.0	Mm.210899	NM_021414	ENSMUSG00000029772	Ahcyl2	4631427C17Rik|AI227036|Adohcyase3|mKIAA0828	S-adenosylhomocysteine hydrolase-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-39718433-1	chr7	39718333	39718533	+	633.0	f1_balb.idr	Intergenic	Intergenic	200667.0	NM_001004139	70227.0	Mm.333800	NM_001004139	ENSMUSG00000068959	Zfp619	3000002G13Rik	zinc finger protein 619	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-52966426-4	chr2	52966300	52966500	+	929.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	108532.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-98040907-1	chr13	98040807	98041007	+	559.0	f1_balb.idr	intron (NM_012026, intron 7 of 35)	intron (NM_012026, intron 7 of 35)	165258.0	NM_012026	110596.0	Mm.252718	NM_012026	ENSMUSG00000021662	Arhgef28	9230110L08Rik|AI323540|D13Bwg1089e|RIP2|Rgnef|RhoGEF|Rhoip2|p190RhoGEF	Rho guanine nucleotide exchange factor (GEF) 28	protein-coding	1.19804665141019	1.06609219409799	2.32172115053338	1.9755613325498	1.77809813997197	1.72549927604547	2.34160805404518	1.02690372537016	0.127803126654872	0.914719971547549	0.998431161219273
Merged-chr4-83309082-4	chr4	83308985	83309185	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027238, intron 1 of 19)	MTC|LTR|ERVL-MaLR	15104.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-54954425-3	chr6	54954337	54954537	+	902.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172729, intron 1 of 11)	RLTR11A2|LTR|ERVK	17224.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-137941872-3	chr3	137941771	137941971	+	878.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011932, intron 4 of 8)	intron (NM_011932, intron 4 of 8)	23316.0	NM_019920	56692.0	Mm.331392	NM_019920	ENSMUSG00000091512	Lamtor3	AW556229|Map2k1ip1|Mapbp|Mapksp1|Mp1	late endosomal/lysosomal adaptor, MAPK and MTOR activator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-52944881-2	chr2	52944781	52944981	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	87013.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-94975222-4	chr3	94975127	94975327	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293716, intron 1 of 9)	intron (NM_001293716, intron 1 of 9)	496.0	NM_001293716	107650.0	Mm.217222	NM_175356	ENSMUSG00000038861	Pi4kb	ESTM41|PI4K-beta|PI4Kbeta|Pik4cb	phosphatidylinositol 4-kinase beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-135663425-2	chr1	135663325	135663525	+	627.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56638.0	NM_001360782	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-116657049-2	chr8	116656949	116657149	+	719.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_029441, intron 1 of 6)	B4A|SINE|B4	75942.0	NM_029441	75796.0	Mm.159575	NM_029441	ENSMUSG00000031758	Cdyl2	1700029M19Rik|4930453I21Rik|Gm20194	chromodomain protein, Y chromosome-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-110889196-4	chr12	110889104	110889304	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027223)	promoter-TSS (NM_027223)	-59.0	NM_026048	67236.0	Mm.287157	NM_026048	ENSMUSG00000021276	Cinp	1810047K05Rik|2810452K22Rik	cyclin-dependent kinase 2 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-120405306-2	chr14	120405206	120405406	+	663.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360376, intron 8 of 8)	intron (NM_001360376, intron 8 of 8)	-73155.0	NM_029519	76108.0	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-130257910-2	chr5	130257810	130258010	+	810.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_153350, intron 1 of 15)	intron (NR_153350, intron 1 of 15)	873.0	NM_001015876	100929.0	Mm.271296	NM_178897	ENSMUSG00000056310	Tyw1	AW125391|Rsafd1	tRNA-yW synthesizing protein 1 homolog (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-49979900-1	chr18	49979800	49980000	+	1000.0	f1_balb.idr	intron (NM_001177759, intron 1 of 1)	intron (NM_001177759, intron 1 of 1)	473.0	NM_001177759	106869.0	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-52906677-4	chr2	52906607	52906807	+	752.537476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	48839.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-5254497-4	chr16	5254386	5254586	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027446, intron 1 of 7)	intron (NM_027446, intron 1 of 7)	1470.0	NM_027446	70511.0	Mm.45780	NM_027446	ENSMUSG00000022544	Eef2kmt	5730409G15Rik|Fam86|Fam86a|eEF2-KMT	eukaryotic elongation factor 2 lysine methyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-45198116-2	chr2	45198016	45198216	+	705.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-80674.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-8283072-4	chr17	8283028	8283228	+	932.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018819)	promoter-TSS (NM_018819)	-685.0	NM_018819	55951.0	Mm.288510	NM_018819	ENSMUSG00000023861	Mpc1	0610006G08Rik|3830411I18Rik|Brp44l	mitochondrial pyruvate carrier 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-83814312-4	chr7	83814209	83814409	+	954.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19470.0	NM_029335	75556.0	Mm.17649	NM_029335	ENSMUSG00000011154	Cfap161	1700026D08Rik|AW047638|AW551802	cilia and flagella associated protein 161	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-94405640-4	chr2	94405539	94405739	+	938.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183106, intron 1 of 24)	(CA)n|Simple_repeat|Simple_repeat	1050.0	NM_183106	74569.0	Mm.248504	NM_183106	ENSMUSG00000027194	Ttc17	9130020K17Rik|D2Bwg1005e	tetratricopeptide repeat domain 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-51651740-4	chr13	51651642	51651842	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029279)	promoter-TSS (NM_029279)	34.0	NM_029279	75420.0	Mm.275981	NM_029279	ENSMUSG00000035139	Secisbp2	2210413N07Rik|2810012K13Rik|SBP2	SECIS binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116436903-4	chr11	116436805	116437005	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176902, intron 2 of 2)	intron (NM_176902, intron 2 of 2)	2692.0	NR_003376	664849.0	Mm.258466	NR_003376		Gm7367	EG664849	1110014K08Rik pseudogene	pseudo	4.85021883485955	4.32805135435078	3.25627169890109	5.09654007201425	4.21493062074943	4.00741245719414	3.95076296763158	4.03337165363838	-0.646695618841298	0.168055701102597	0.634066761581433
Merged-chr12-32893440-4	chr12	32893334	32893534	+	928.30835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	60355.0	NR_044986	74076.0	Mm.50114	NR_044986	ENSMUSG00000097494	4933406C10Rik	-	RIKEN cDNA 4933406C10 gene	ncRNA	2.37271240845424	2.66157584324995	2.78409946603028	3.03122824322663	2.83318678466258	2.55310600303201	2.70404764034405	1.47298514900016	-0.478484954053002	0.554436544912198	0.959914380895535
Merged-chr10-81153714-2	chr10	81153614	81153814	+	660.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_021501)	TTS (NM_021501)	14006.0	NM_021501	59004.0	Mm.34428	NM_021501	ENSMUSG00000004934	Pias4	PIASY|Pias-gamma|Piasg	protein inhibitor of activated STAT 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-29646828-2	chr2	29646728	29646928	+	757.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_054050, intron 1 of 23)	intron (NM_054050, intron 1 of 23)	27108.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-24632468-2	chr10	24632368	24632568	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	37026.0	NM_010217	14219.0	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-89023605-3	chr11	89023503	89023703	+	991.611145	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24200.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	5.42258344555148	5.30050808782843	5.17881853580325	4.89144577351493	2.58092811292009	4.3459300949308	4.20283287660426	3.61116439815629	-1.74669488759453	4.55314977824192e-05	0.0016202359772094
Merged-chr3-104430311-2	chr3	104430211	104430411	+	623.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	81607.0	NM_001025067	269473.0	Mm.34855	NM_001025067	ENSMUSG00000032913	Lrig2	4632419I10Rik|BB096938|LIG-2	leucine-rich repeats and immunoglobulin-like domains 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47595229-2	chr17	47595129	47595329	+	660.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081635, intron 4 of 6)	intron (NM_001081635, intron 4 of 6)	1762.0	NM_007632	12445.0	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-95557478-4	chr10	95557391	95557591	+	887.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358996, intron 1 of 4)	B2_Mm2|SINE|B2	1830.0	NR_037212	100526463.0		NR_037212	ENSMUSG00000092867	Mir3058	mir-3058|mmu-mir-3058	microRNA 3058	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-42266146-4	chr6	42266032	42266232	+	873.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007610, intron 1 of 10)	intron (NM_007610, intron 1 of 10)	1147.0	NM_007610	12366.0	Mm.3921	NM_007610	ENSMUSG00000029863	Casp2	CASP-2|ICH-1|NEDD-2|Nedd2	caspase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111037786-7	chr12	111037635	111037835	+	900.464294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2063.0	NM_198023	217864.0	Mm.23808	NM_198023	ENSMUSG00000037896	Rcor1	5730409O11|6720480E22Rik|AU042633|D12Wsu95e|Rocr1|mKIAA0071	REST corepressor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-35023432-2	chr7	35023332	35023532	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008820, intron 11 of 14)	intron (NM_008820, intron 11 of 14)	33134.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-114742409-4	chr6	114742308	114742508	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253718, intron 18 of 19)	intron (NM_001253718, intron 18 of 19)	99311.0	NM_001253718	74244.0	Mm.275332	NM_028835	ENSMUSG00000030314	Atg7	1810013K23Rik|Agp7|Apg7l|Atg7l|Gm21553	autophagy related 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134211458-3	chr6	134211348	134211548	+	961.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 3 of 8)	intron (NM_001303102, intron 3 of 8)	175748.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-32945542-2	chr16	32945442	32945642	+	810.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081255, intron 1 of 20)	intron (NM_001081255, intron 1 of 20)	31442.0	NM_001310672	70144.0	Mm.491178	NM_001081255	ENSMUSG00000022801	Lrch3	2210409B11Rik|AW215594|Gm1742	leucine-rich repeats and calponin homology (CH) domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-94192228-1	chr8	94192128	94192328	+	540.0	f1_balb.idr	Intergenic	B2_Mm2|SINE|B2	13139.0	NM_013602	17748.0	Mm.192991	NM_013602	ENSMUSG00000031765	Mt1	MT-I|Mt-1	metallothionein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26637992-3	chr17	26637868	26638068	+	838.472229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026170, intron 7 of 9)	L2b|LINE|L2	-38428.0	NM_025272	11974.0	Mm.22602	NM_025272	ENSMUSG00000015575	Atp6v0e	Atp6k|Atp6v0e1|M9.2	ATPase, H+ transporting, lysosomal V0 subunit E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71469984-2	chr8	71469884	71470084	+	914.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001294259, intron 1 of 3)	intron (NM_001294259, intron 1 of 3)	790.0	NR_122114	66498.0	Mm.260360	NM_025600	ENSMUSG00000074247	Dda1	1500034J01Rik|1700095J19Rik|R74921	DET1 and DDB1 associated 1	protein-coding	1.89563683880522	2.14199215415236	3.13832592545664	2.00454193058698	2.98118094448618	3.27132877252443	2.52289470594264	1.34425269583233	0.593527012460445	0.511329034485533	0.94512318675548
Merged-chr15-102451099-4	chr15	102450995	102451195	+	957.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356575, intron 7 of 11)	intron (NM_001356575, intron 7 of 11)	5728.0	NM_144547	110542.0	Mm.60331	NM_144547	ENSMUSG00000023047	Amhr2	Misiir|Misrii|Mrii	anti-Mullerian hormone type 2 receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-119005142-4	chr4	119005013	119005213	+	834.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43146.0	NM_133892	100470.0	Mm.26698	NM_133892	ENSMUSG00000024903	Lao1	AW990848	L-amino acid oxidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-105356583-4	chr5	105356481	105356681	+	998.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10105.0	NR_132129	634650.0	Mm.458435	NM_001039647	ENSMUSG00000092021	Gbp11	EG634650|Gm7141	guanylate binding protein 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-57276946-4	chr17	57276785	57276985	+	997.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2215.0	NM_001163816	22324.0	Mm.248172	NM_011691	ENSMUSG00000034116	Vav1	Vav|vav-T	vav 1 oncogene	protein-coding	2.27467421077337	3.00599129841869	1.64448329874652	1.10812444621424	2.09170262556048	3.02921344270651	1.65861051128392	1.11337209425834	-0.0634705955183029	0.953980122966936	0.998431161219273
Merged-chr9-32590082-4	chr9	32589982	32590182	+	898.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48630.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-73633312-3	chr5	73633213	73633413	+	851.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153568)	promoter-TSS (NM_153568)	-892.0	NM_153568	231296.0	Mm.168948	NM_153568	ENSMUSG00000067206	Lrrc66	-	leucine rich repeat containing 66	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-88075259-4	chr6	88075169	88075369	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9204.0	NM_133933	103963.0	Mm.188544	NM_133933	ENSMUSG00000030062	Rpn1	AU018702|D6Wsu137e|Rpn-1	ribophorin I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-125429571-1	chr5	125429471	125429671	+	572.0	f1_c57bl6.idr	intron (NM_203319, intron 4 of 26)	B3|SINE|B2	4477.0	NM_203319	208144.0	Mm.296385	NM_203319	ENSMUSG00000029480	Dhx37	Gm1050|Gm451|mKIAA1517	DEAH (Asp-Glu-Ala-His) box polypeptide 37	protein-coding	-1.84303373260285	-1.81303463126392	-1.82210660711932	-1.82955859819738	-1.84092785115721	-1.81106869625141	-1.8200529106377	-1.54273750312762	1.50114612804783	0.670102668014672	1
Merged-chr11-94486208-4	chr11	94486116	94486316	+	855.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144827)	promoter-TSS (NM_144827)	-906.0	NM_144827	217116.0	Mm.156123	NM_144827	ENSMUSG00000020867	Spata20	Tisp78	spermatogenesis associated 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-97387884-1	chr7	97387784	97387984	+	549.0	f1_c57bl6.idr	intron (NM_199035, intron 9 of 12)	B4A|SINE|B4	-12119.0	NM_024220	68197.0	Mm.334031	NM_024220	ENSMUSG00000030647	Ndufc2	1810004I06Rik|2010300P09Rik|G1|R75094	NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 2	protein-coding	1.5571413142509	0.706215989453121	0.897403611332309	0.874913743504769	1.11335642964308	1.63105390976999	0.696776570829958	1.17770147314788	0.549536551492617	0.702931750155892	0.998431161219273
Merged-chr19-16107890-3	chr19	16107798	16107998	+	761.527771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24933.0	NM_008139	14682.0	Mm.439701	NM_008139	ENSMUSG00000024639	Gnaq	1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI	guanine nucleotide binding protein, alpha q polypeptide	protein-coding	0.728360057090058	0.453553480213081	1.18825032057348	0.436069072996143	0.969618037797803	0.455751674820063	0.445907334841232	1.41236664285307	0.69962595097004	0.690678149818474	1
Merged-chr8-122567722-4	chr8	122567622	122567822	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026014)	promoter-TSS (NM_026014)	-293.0	NM_026014	67177.0	Mm.21873	NM_026014	ENSMUSG00000006585	Cdt1	2610318F11Rik|AW545653|C76791|Ris2	chromatin licensing and DNA replication factor 1	protein-coding	6.95920245506553	6.58890663302655	7.03610039563368	7.00372050917904	7.12562736742481	6.67422802587239	6.59462297054323	7.31553024159056	0.0583976876979935	0.772083613785767	0.998431161219273
Merged-chr11-20403687-4	chr11	20403581	20403781	+	976.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-70968.0	NM_018861	55963.0	Mm.6379	NM_018861	ENSMUSG00000020142	Slc1a4	ASCT-1|ASCT1|AW045657|SATT	solute carrier family 1 (glutamate/neutral amino acid transporter), member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-58253155-4	chr9	58253053	58253253	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026942)	promoter-TSS (NM_026942)	-11.0	NR_028146	69106.0	Mm.216502	NM_026942	ENSMUSG00000032333	Stoml1	1810015E19Rik|AI847431|SLP1|STORP|UNC24|WPB72	stomatin-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-102579894-2	chr4	102579839	102580039	+	640.5	f0_balb.idr|f1_c57bl6.idr	intron (NM_019840, intron 6 of 14)	intron (NM_019840, intron 6 of 14)	-7619.0	NM_001177982	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	-1.8418762459921	-1.8125357239735	-1.82140854000656	-1.82869693527674	-1.56059678980999	-1.8106129477253	-1.81939992894326	-1.82739231600805	1.3620893379502	0.699511506488145	1
Merged-chr8-70592896-2	chr8	70592788	70592988	+	740.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_007924)	TTS (NM_007924)	-1593.0	NM_023627	71780.0	Mm.29357	NM_023627	ENSMUSG00000019139	Isyna1	1300017C10Rik|AU018670	myo-inositol 1-phosphate synthase A1	protein-coding	1.24453487356417	0.828999502758333	1.35947139714602	1.4437145671474	0.785448460626149	0.832333562983957	1.90957867937957	1.75822372971624	0.711137475349104	0.614101474227278	0.977250439470701
Merged-chr10-79989119-2	chr10	79989019	79989219	+	781.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007725, intron 1 of 6)	intron (NM_007725, intron 1 of 6)	519.0	NM_007725	12798.0	Mm.157770	NM_007725	ENSMUSG00000004665	Cnn2	AA408047|AI324678|Calpo2	calponin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5878159-2	chr19	5878059	5878259	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_134154, exon 1 of 6)	5' UTR (NM_134154, exon 1 of 6)	337.0	NM_001361974	107375.0	Mm.5323	NM_134154	ENSMUSG00000024818	Slc25a45	AW491445	solute carrier family 25, member 45	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-37918778-2	chr13	37918678	37918878	+	940.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_033615, intron 8 of 9)	intron (NR_033615, intron 8 of 9)	29907.0	NM_001177869	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-54317297-1	chr12	54317197	54317397	+	635.0	f0_c57.idr	Intergenic	Intergenic	74021.0	NR_033689	665239.0	Mm.26856	NR_033689		Gm7550	EG665239|Gm666	predicted gene 7550	ncRNA	-1.56355737717652	-1.81244775989375	-1.82128546162293	-1.82854501295842	-1.83962066705452	-1.81053259306168	-1.81928479966835	-1.82724555674025	-1.28500227969968	0.715751224811686	1
Merged-chr11-31847845-1	chr11	31847745	31847945	+	544.0	f0_c57.idr	Intergenic	MER2|DNA|TcMar-Tigger	-23095.0	NM_001290676	67579.0	Mm.339792	NM_026252	ENSMUSG00000020300	Cpeb4	Cpe-bp4|Cpeb-4|mCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding	2.34632642766973	1.17336270739526	1.14470342112237	2.40068641512403	2.4389680597928	2.39311862825062	1.15113064093827	2.01270723676847	0.418295418891125	0.720608373860266	0.998431161219273
Merged-chr16-82761624-3	chr16	82761539	82761739	+	687.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	1560942.0	NM_010954	17968.0	Mm.433941	NM_010954	ENSMUSG00000022762	Ncam2	Ncam-2|Ocam|RNCAM	neural cell adhesion molecule 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-144300286-4	chr2	144300199	144300399	+	826.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC5|LINE|L1	29395.0	NM_001355688	74528.0	Mm.386817	NM_028984	ENSMUSG00000027424	Mgme1	8430406I07Rik|AI426476	mitochondrial genome maintenance exonuclease 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-38394756-3	chr19	38394650	38394850	+	759.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1230.0	NM_175507	240660.0	Mm.262085	NM_175507	ENSMUSG00000044026	Slc35g1	AA590464|D330039I19Rik|Tmem20	solute carrier family 35, member G1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64202882-3	chr5	64202782	64202982	+	938.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019636, intron 2 of 19)	L1MB8|LINE|L1	-27475.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-3221882-4	chr8	3221778	3221978	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001330056, intron 2 of 21)	intron (NM_001330056, intron 2 of 21)	57739.0	NM_010568	16337.0	Mm.268003	NM_010568	ENSMUSG00000005534	Insr	4932439J01Rik|CD220|D630014A15Rik|IR|IR-A|IR-B	insulin receptor	protein-coding	3.84593128724156	4.37630357839696	3.65408774089434	3.87818596569585	2.74034135524345	3.64054149271791	2.85262521588302	3.32358617745899	-1.17764207694342	0.0282920488524931	0.227919428468361
Merged-chr6-48121239-2	chr6	48121140	48121340	+	922.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34647.0	NM_001362062	69228.0	Mm.207555	NM_001163475	ENSMUSG00000057691	Zfp746	2810407L07Rik|AI317225|Znf746	zinc finger protein 746	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-60500096-4	chr18	60499993	60500193	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134133, intron 1 of 1)	intron (NM_134133, intron 1 of 1)	1890.0	NM_134133	106878.0	Mm.273197	NM_134133	ENSMUSG00000038059	Smim3	2010002N04Rik|AI195350|AW561905|Nid67|cI-41	small integral membrane protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-23176740-2	chr10	23176636	23176836	+	845.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010167, intron 3 of 18)	intron (NM_010167, intron 3 of 18)	173154.0	NM_001347372	14051.0	Mm.332128	NM_010167	ENSMUSG00000010461	Eya4	B130023L16Rik	EYA transcriptional coactivator and phosphatase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-142912987-4	chr5	142912854	142913054	+	734.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6200.0	NM_007393	11461.0	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-104285111-4	chr13	104285003	104285203	+	912.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2732.0	NR_136938	108154.0	Mm.208125	NM_175496	ENSMUSG00000046169	Adamts6	A930019D11Rik|ADAM-TS6|b2b1879.1Clo|b2b2029Clo|b2b2182Clo|b2b2187.1Clo|b2b2228Clo	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-75502077-2	chr18	75501977	75502177	+	871.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_201354, intron 9 of 11)	intron (NM_201354, intron 9 of 11)	-12568.0	NR_045879	100038353.0	Mm.440724	NR_045879	ENSMUSG00000097712	Gm10532	-	predicted gene 10532	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-87010654-4	chr11	87010567	87010767	+	773.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16905.0	NM_001005341	77864.0	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-34217880-1	chr19	34217780	34217980	+	908.0	f1_balb.idr	intron (NM_001360719, intron 1 of 10)	ID_B1|SINE|B4	372.0	NM_001360719	76630.0	Mm.130952	NM_029682	ENSMUSG00000024776	Stambpl1	1700095N21Rik|8230401J17Rik|ALMalpha|AMSH-FP	STAM binding protein like 1	protein-coding	-0.417717480266155	-0.40341669512124	-0.408085651308692	0.0384860430193272	-0.416820421328459	-0.402366363650667	-0.407054548302204	0.434303290543806	1.24445282124957	0.64090262545724	1
Merged-chr11-110993802-4	chr11	110993712	110993912	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252207, intron 2 of 2)	intron (NM_001252207, intron 2 of 2)	-3675.0	NM_001252209	16517.0	Mm.30176	NM_010604	ENSMUSG00000051497	Kcnj16	6430410F18Rik|AI132396|Kir5.1	potassium inwardly-rectifying channel, subfamily J, member 16	protein-coding	6.01826317287274	5.11222476497217	5.80423387702792	5.87885775788661	5.81978852831938	4.44357980129801	5.48073943806518	5.47494505546263	-0.394164415458677	0.220745397684576	0.711835678575402
Merged-chr3-22024386-4	chr3	22024275	22024475	+	926.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52277.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-8800168-1	chr19	8800068	8800268	+	543.0	f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-1611.0	NM_026329	67710.0	Mm.22117	NM_026329	ENSMUSG00000071662	Polr2g	2410046K11Rik|A230108L04Rik|C76415|RBP7|Rpo2-7l	polymerase (RNA) II (DNA directed) polypeptide G	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-41371023-3	chr8	41370946	41371146	+	617.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019734, intron 1 of 13)	intron (NM_019734, intron 1 of 13)	3651.0	NM_019734	11886.0	Mm.22547	NM_019734	ENSMUSG00000031591	Asah1	2310081N20Rik|AC|Asah	N-acylsphingosine amidohydrolase 1	protein-coding	1.171721974565	0.773905572122156	1.51928990775766	0.750868276139244	1.39444620418609	1.47746252013866	1.53351374042402	0.752644655243847	0.900593517816876	0.536137398853426	0.953323426463389
Merged-chr17-83268941-2	chr17	83268841	83269041	+	705.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR40a|LTR|ERVL	53658.0	NM_134117	106522.0	Mm.311974	NM_134117	ENSMUSG00000024247	Pkdcc	AI115348|AW548124|Adtk1|ESTM17|MAd1|Sgk493|Vlk|X83346	protein kinase domain containing, cytoplasmic	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115705274-2	chr11	115705177	115705377	+	859.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008163, intron 1 of 5)	intron (NM_008163, intron 1 of 5)	3320.0	NM_008163	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67024917-2	chr10	67024817	67025017	+	882.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_110511, intron 2 of 6)	B3|SINE|B2	19842.0	NR_110511	102634101.0	Mm.445258	NR_110511	ENSMUSG00000112925	Gm31763	-	predicted gene, 31763	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91724380-4	chr16	91724219	91724419	+	817.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026994, intron 1 of 11)	MT2B|LTR|ERVL	4483.0	NM_026994	66609.0	Mm.109823	NM_026994	ENSMUSG00000058240	Cryzl1	2210407J23Rik|2410006O11Rik|QOH-1	crystallin, zeta (quinone reductase)-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-161492253-3	chr1	161492147	161492347	+	991.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2410.0	NM_183391	240873.0	Mm.276823	NM_183391	ENSMUSG00000066755	Tnfsf18	Gitrl|Tnlg2a	tumor necrosis factor (ligand) superfamily, member 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-3104767-5	chr11	3104583	3104783	+	822.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GSAT_MM|Satellite|Satellite	-19338.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-144014901-4	chr5	144014801	144015001	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177682)	promoter-TSS (NM_177682)	-48.0	NM_177682	231874.0	Mm.320432	NM_177682	ENSMUSG00000029617	Ccz1	AU022870	CCZ1 vacuolar protein trafficking and biogenesis associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-53762351-2	chr11	53762251	53762451	+	923.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	7SLRNA|srpRNA|srpRNA	1303.0	NR_106131	102465772.0		NR_106131	ENSMUSG00000099153	Mir7671	Gm27802|mmu-mir-7671	microRNA 7671	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-83997820-4	chr8	83997665	83997865	+	872.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081415)	promoter-TSS (NM_001081415)	93.0	NM_001081415	666704.0	Mm.298091	NM_001081415	ENSMUSG00000079003	Samd1	AA589507	sterile alpha motif domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-165584533-2	chr1	165584433	165584633	+	566.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50008.0	NM_001001880	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-66012769-2	chr5	66012669	66012869	+	631.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8484.0	NR_027961	231253.0	Mm.436542	NM_177679	ENSMUSG00000054598	9130230L23Rik	-	RIKEN cDNA 9130230L23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-91110576-3	chr6	91110472	91110672	+	741.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018815, intron 1 of 39)	L1MB3|LINE|L1	6254.0	NM_018815	54563.0	Mm.28162	NM_018815	ENSMUSG00000030091	Nup210	9830001L10|AI836801|Pom210|gp190|gp210	nucleoporin 210	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-103721678-4	chr5	103721556	103721756	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32506.0	NM_133919	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-18814141-2	chr13	18814041	18814241	+	573.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172120, intron 9 of 28)	intron (NM_172120, intron 9 of 28)	96849.0	NM_172120	218035.0	Mm.27389	NM_172120	ENSMUSG00000041236	Vps41	AI317346|Vam2|mVam2	VPS41 HOPS complex subunit	protein-coding	-0.194555186236014	-0.482349344851315	0.52947600149994	-0.491393996907303	-0.497024779710608	-0.481207472375417	-0.486313235462606	-0.490701357421506	-3.74753188516998	0.145665372655234	1
Merged-chr17-78895587-4	chr17	78895482	78895682	+	899.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163625, intron 3 of 6)	intron (NM_001163625, intron 3 of 6)	11410.0	NM_001163625	73671.0	Mm.45514	NM_001163625	ENSMUSG00000038045	Sult6b1	2410078J06Rik|AV101767|ST6B1	sulfotransferase family, cytosolic, 6B, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-79483154-2	chr14	79483054	79483254	+	759.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007920, intron 1 of 8)	B1F|SINE|Alu	-1886.0	NM_018765	22380.0	Mm.476813	NM_018765	ENSMUSG00000022023	Wbp4	AW545037|BB101031|FBP21	WW domain binding protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-106038326-2	chr1	106038226	106038426	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur2|LINE|L1	47920.0	NM_001122675	227449.0	Mm.210188	NM_001122675	ENSMUSG00000038866	Zcchc2	9930114B20Rik|AW212015	zinc finger, CCHC domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-45631186-2	chr19	45631098	45631298	+	699.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_013907, intron 4 of 8)	intron (NM_013907, intron 4 of 8)	28995.0	NM_013907	30838.0	Mm.254739	NM_013907	ENSMUSG00000040913	Fbxw4	Dac|Fbw4|SHFM3|SHSF3|dactylin|dactylyn	F-box and WD-40 domain protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139787710-2	chr5	139787610	139787810	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3826.0	NM_010757	17135.0	Mm.157313	NM_010757	ENSMUSG00000018143	Mafk	AW061068|NF-E2|Nfe2u	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein K (avian)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-111793702-2	chr13	111793602	111793802	+	905.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011945, intron 1 of 19)	intron (NM_011945, intron 1 of 19)	15291.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	-0.194037728560203	-0.42387331243991	-0.0133107961555184	-0.429577882452244	-0.188145993662125	-0.423141948201332	-0.262997771939768	-0.429146559713016	-0.779245512631888	0.748925195858772	1
Merged-chr9-21159895-2	chr9	21159795	21159995	+	963.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	-5819.0	NM_183408	18577.0	Mm.191749	NM_019798	ENSMUSG00000032177	Pde4a	D9Ertd60e|Dpde2	phosphodiesterase 4A, cAMP specific	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36197385-4	chr18	36197266	36197466	+	847.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001167891)	promoter-TSS (NM_001167891)	-206.0	NM_001167891	100042150.0	Mm.380390	NM_001167891	ENSMUSG00000060275	Nrg2	Don1|NTAK	neuregulin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180771491-4	chr1	180771396	180771596	+	872.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42109.0	NM_008210	15078.0	Mm.138832	NM_008210	ENSMUSG00000060743	H3f3a	EyeLinc14|H3.3A	H3 histone, family 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132802420-4	chr4	132802338	132802538	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6074.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-64072060-3	chr15	64071972	64072172	+	872.694458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11624.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-32529427-4	chr3	32529343	32529543	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024200)	promoter-TSS (NM_024200)	-39.0	NM_024200	67414.0	Mm.290414	NM_024200	ENSMUSG00000027668	Mfn1	2310002F04Rik|6330416C07Rik|D3Ertd265e|HR2|mKIAA4032	mitofusin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-91584879-2	chr12	91584779	91584979	+	789.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175335, intron 2 of 8)	intron (NM_175335, intron 2 of 8)	4770.0	NM_031391	83602.0	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115049450-4	chr11	115049358	115049558	+	879.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-1163.0	NM_199201	382551.0	Mm.424732	NM_199201	ENSMUSG00000069607	Cd300ld3	AY457049|Cd300lh|Clm3|Lmir7|clm-3	CD300 molecule like family member D3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-88794904-3	chr10	88794805	88795005	+	979.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175158, intron 22 of 61)	intron (NM_175158, intron 22 of 61)	31909.0	NM_175158	70683.0	Mm.29631	NM_175158	ENSMUSG00000004356	Utp20	3830408P06Rik|AA617408|Drim|mDRIM|mDRIN	UTP20 small subunit processome component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-77468880-3	chr1	77468790	77468990	+	950.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007936, intron 3 of 17)	intron (NM_007936, intron 3 of 17)	27878.0	NR_105770	102465180.0		NR_105770	ENSMUSG00000099141	Mir6352	Gm27481|mmu-mir-6352	microRNA 6352	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-77314901-4	chr10	77314805	77315005	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024838, intron 6 of 11)	MTE2b|LTR|ERVL-MaLR	55605.0	NM_030262	80294.0	Mm.203556	NM_030262	ENSMUSG00000020260	Pofut2	2310011G23Rik|AI256847|BC003494|C21orf80|FUT13	protein O-fucosyltransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-70731271-4	chr9	70731158	70731358	+	897.2708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007399, intron 4 of 15)	L2|LINE|L2	52276.0	NM_007399	11487.0	Mm.3037	NM_007399	ENSMUSG00000054693	Adam10	1700031C13Rik|MADM|kuz|kuzbanian	a disintegrin and metallopeptidase domain 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-15264339-2	chr4	15264239	15264439	+	626.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1481.0	NM_181401	100201.0	Mm.394111	NM_181401	ENSMUSG00000043252	Tmem64	9630015D15Rik|AI790744|AV300874	transmembrane protein 64	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180414146-2	chr1	180414046	180414246	+	589.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081175, intron 4 of 7)	intron (NM_001081175, intron 4 of 7)	69358.0	NM_001081227	381310.0	Mm.44791	NM_001081227	ENSMUSG00000053963	Stum	6330403A02Rik|Gm10001|R75555	mechanosensory transduction mediator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-13701949-4	chr9	13701845	13702045	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173776, intron 2 of 3)	intron (NM_173776, intron 2 of 3)	39485.0	NM_173776	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-41136708-4	chr9	41136591	41136791	+	985.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176860, intron 1 of 13)	intron (NM_176860, intron 1 of 13)	21371.0	NM_176860	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	4.35574720139272	3.93687056285668	4.69221097398532	3.18607280131099	5.16200958960061	4.46513853939319	4.88761014893256	4.5936086058041	0.830981957775505	0.0529904380292113	0.336825252383624
Merged-chr17-23570150-2	chr17	23570050	23570250	+	624.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-5924.0	NM_001033496	449521.0	Mm.268582	NM_001033496	ENSMUSG00000071256	Zfp213	BC038178|D17Ertd197e	zinc finger protein 213	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-17244391-2	chr19	17244276	17244476	+	932.375	f0_balb.idr|f1_balb.idr	Intergenic	RLTR11A|LTR|ERVK	95129.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	1.1272707839259	1.36901268641762	1.29693932283985	1.55776488274354	4.18083324215188	3.80576036845267	4.13314115976642	4.6893407965554	6.58079540486659	4.43729408307986e-09	5.87191041273443e-07
Merged-chr18-56926325-2	chr18	56926225	56926425	+	697.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177115)	promoter-TSS (NM_177115)	-777.0	NM_177115	320253.0	Mm.312623	NM_177115	ENSMUSG00000032656	March3	6330411I15Rik|A530081L18Rik|AI843639|MARCH-III	membrane-associated ring finger (C3HC4) 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-60192015-3	chr10	60191909	60192109	+	768.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016803, intron 2 of 3)	intron (NM_016803, intron 2 of 3)	27251.0	NM_016803	53374.0	Mm.12866	NM_016803	ENSMUSG00000057337	Chst3	C6ST|C6ST-1|GST-0	carbohydrate (chondroitin 6/keratan) sulfotransferase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-51493731-1	chr1	51493631	51493831	+	1000.0	f0_balb.idr	Intergenic	Intergenic	-15332.0	NM_001310549	109019.0	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-98810383-4	chr13	98810285	98810485	+	973.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172591, intron 1 of 25)	intron (NM_172591, intron 1 of 25)	5064.0	NM_172591	218503.0	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	2.83844297976465	3.90227706907365	2.85480342561292	2.77134935003352	2.95840299999394	3.50327974909705	3.80759215038901	2.90427033685421	0.265135050695895	0.675710126527944	0.99440487726309
Merged-chr7-102023218-2	chr7	102023118	102023318	+	969.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029211, intron 8 of 8)	intron (NM_029211, intron 8 of 8)	-5063.0	NM_010531	16068.0	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-79303450-4	chr17	79303354	79303554	+	829.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51637.0	NM_026514	260409.0	Mm.140601	NM_026514	ENSMUSG00000036533	Cdc42ep3	3200001F04Rik|AA986861|Borg2|Cep3|UB1	CDC42 effector protein (Rho GTPase binding) 3	protein-coding	2.39624853714857	2.81778797570436	3.2356826873863	3.20053047569449	1.94866325547202	1.28125114339326	1.52958802844015	1.20143063243451	-3.39480052250744	0.000544821278215156	0.0119867341614158
Merged-chr7-19228195-4	chr7	19228113	19228313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207525)	promoter-TSS (NM_207525)	-176.0	NM_207525	403187.0	Mm.239583	NM_207525	ENSMUSG00000052214	Opa3	D630048P19Rik|Gm1425|Gm472	optic atrophy 3	protein-coding	8.64058851749656	8.35570625400064	8.55436698936387	8.48782220505674	8.34964990069378	8.37464065303787	8.54114743965151	8.38382659221929	-0.105305005357423	0.351871707078192	0.852338361069366
Merged-chr19-6366887-2	chr19	6366787	6366987	+	586.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360393, intron 2 of 11)	intron (NM_001360393, intron 2 of 11)	3197.0	NR_122118	22668.0	Mm.256422	NM_011750	ENSMUSG00000024949	Sf1	BBP|MZFM|WBP4|Zfp162	splicing factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-54702850-2	chr13	54702750	54702950	+	666.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033364, intron 1 of 31)	intron (NM_001033364, intron 1 of 31)	1387.0	NM_001033364	268663.0	Mm.315382	NM_001033364	ENSMUSG00000034918	Cdhr2	Gm624|PC-LKC|Pcdh24	cadherin-related family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-78358532-2	chr11	78358432	78358632	+	997.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001277290, exon 9 of 9)	3' UTR (NM_001277290, exon 9 of 9)	11822.0	NM_001313987	22248.0	Mm.284811	NM_011676	ENSMUSG00000002058	Unc119	D11Bhm52|HRG4|MRG4|Rg4|Rtg4|Unc119h	unc-119 lipid binding chaperone	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5573874-2	chr19	5573774	5573974	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	5850.0	NM_001033448	381201.0	Mm.441906	NM_001033448	ENSMUSG00000049562	Ap5b1	Gm962|beta-5	adaptor-related protein complex 5, beta 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-112263130-2	chr2	112263030	112263230	+	545.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_025403)	TTS (NM_025403)	1204.0	NM_025403	66181.0	Mm.272346	NM_025403	ENSMUSG00000027133	Nop10	1110036B12Rik|NOP10P|Nola3	NOP10 ribonucleoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-154097868-4	chr1	154097770	154097970	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB3|LINE|L1	-103317.0	NM_001204908	100503355.0	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	Gm10178|Gm203	zinc finger protein 648	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-8793426-4	chr4	8793329	8793529	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355382, intron 2 of 36)	L1MA4|LINE|L1	42105.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	1.7439247719277	2.63361250073315	2.64256486475236	2.47584708910008	2.04577172247555	2.54257628384641	2.4594268002314	2.00049328707534	-0.321635642336168	0.701430779345764	0.998431161219273
Merged-chr5-92309764-7	chr5	92309629	92309829	+	981.4285890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172713, intron 1 of 21)	CpG	295.0	NM_172713	231452.0	Mm.86564	NM_172713	ENSMUSG00000029415	Sdad1	4931421J16|AA591032|AW538460	SDA1 domain containing 1	protein-coding	1.9901569168605	2.55447740054534	1.28981103364507	2.38476555511184	2.27065113814146	3.31959563451558	1.29995542510078	3.49619138090338	1.40982216777193	0.140909252515994	0.58566831813634
Merged-chr13-64036416-2	chr13	64036361	64036561	+	678.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	52740.0	NM_008291	15487.0	Mm.5109	NM_008291	ENSMUSG00000033122	Hsd17b3	-	hydroxysteroid (17-beta) dehydrogenase 3	protein-coding	2.49571476496776	2.15942051113749	2.30390110178673	1.400307206436	1.81396577173886	1.48753505796457	1.19505031031234	2.50600320395339	-0.728279750429758	0.489711007183498	0.934238891709291
Merged-chr11-69430909-2	chr11	69430809	69431009	+	902.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081330, intron 74 of 85)	intron (NM_001081330, intron 74 of 85)	-17234.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-29440091-2	chr17	29439991	29440191	+	809.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50954.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-113793800-2	chr5	113793700	113793900	+	616.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_146162)	TTS (NM_146162)	6552.0	NM_146162	231633.0	Mm.41681	NM_146162	ENSMUSG00000054675	Tmem119	AW208946|BC025600|obif	transmembrane protein 119	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-69228208-2	chr3	69228108	69228308	+	704.708374	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	5789.0	NM_027843	71619.0	Mm.98122	NM_027843	ENSMUSG00000098207	Arl14	9130014L17Rik|Arf7	ADP-ribosylation factor-like 14	protein-coding	2.64913474064338	2.6550105227033	2.44543878501465	2.09695143876126	2.15134574246622	2.24332683712648	3.12798741897798	2.96345136789437	0.44856314568815	0.56281270515832	0.960362415684079
Merged-chr10-61417744-2	chr10	61417644	61417844	+	564.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013611)	promoter-TSS (NM_013611)	-228.0	NM_013611	18119.0	Mm.57195	NM_013611	ENSMUSG00000037171	Nodal	Tg.413d	nodal	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-70839760-2	chr9	70839660	70839860	+	920.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001324473, intron 1 of 8)	intron (NM_001324473, intron 1 of 8)	95048.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-29906296-4	chr7	29906217	29906417	+	995.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011754)	promoter-TSS (NM_011754)	-192.0	NR_106128	102465770.0		NR_106128	ENSMUSG00000098873	Mir7668	Gm27961|mmu-mir-7668	microRNA 7668	ncRNA	4.53134004098679	5.02156242317149	5.17778554658266	4.54591780902614	4.60264373411465	3.33236097924661	4.69962640374136	4.02404605667448	-0.712640792017839	0.0871001339656999	0.453523805082254
Merged-chr16-57390870-3	chr16	57390765	57390965	+	861.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	37588.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-30307724-2	chr16	30307624	30307824	+	660.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_008148)	TTS (NM_008148)	3057.0	NM_008148	14729.0	Mm.3519	NM_008148	ENSMUSG00000047953	Gp5	GPV	glycoprotein 5 (platelet)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-20870992-2	chr9	20870892	20871092	+	782.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175687, intron 3 of 7)	intron (NM_175687, intron 3 of 7)	2350.0	NM_175687	319278.0	Mm.249932	NM_175687	ENSMUSG00000038884	A230050P20Rik	RyDEN	RIKEN cDNA A230050P20 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-20828146-1	chr1	20828046	20828246	+	555.0	f1_c57bl6.idr	Intergenic	Intergenic	-7834.0	NM_008563	17215.0	Mm.4502	NM_008563	ENSMUSG00000041859	Mcm3	AL033361|C80350|Mcmd|P1|P1-MCM3|p1.m	minichromosome maintenance complex component 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-86221186-3	chr15	86221132	86221332	+	764.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145476, intron 1 of 12)	intron (NM_145476, intron 1 of 12)	6773.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-52396550-3	chr12	52396446	52396646	+	988.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	84063.0	NR_136881	102638611.0	Mm.363799	NR_136881	ENSMUSG00000111982	Gm35135	-	predicted gene, 35135	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126694006-2	chr7	126693906	126694106	+	561.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029420, intron 1 of 5)	RMER6D|LTR|ERVK	1777.0	NM_029420	75764.0	Mm.280573	NM_029420	ENSMUSG00000059772	Slx1b	1110030E23Rik|2410170E21Rik|4833422P03Rik|AI853643|Giyd1|Giyd2	SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-38900939-4	chr6	38900848	38901048	+	813.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18038.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-53140466-4	chr15	53140352	53140552	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	205731.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-110998367-4	chr8	110998256	110998456	+	899.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007916)	promoter-TSS (NM_007916)	-533.0	NM_007916	13680.0	Mm.287901	NM_007916	ENSMUSG00000015023	Ddx19a	DBP5|Ddx19|Eif4a-rs1	DEAD (Asp-Glu-Ala-Asp) box polypeptide 19a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-35570992-3	chr8	35570915	35571115	+	862.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	BC1_Mm|scRNA|scRNA	-16783.0	NM_001081279	52065.0	Mm.103246	NM_001081279	ENSMUSG00000070056	Mfhas1	2310066G09Rik|D8Ertd91e	malignant fibrous histiocytoma amplified sequence 1	protein-coding	0.320885237586885	0.194898545490583	0.188501659521085	0.183557288405895	0.754432774869376	0.70179185479719	0.189913631004203	0.827715774065167	3.40026332356417	0.0868114340498774	1
Merged-chr15-58108413-2	chr15	58108322	58108522	+	602.166626	f0_c57.idr|f1_c57bl6.idr	exon (NM_027435, exon 16 of 28)	exon (NM_027435, exon 16 of 28)	26660.0	NM_027435	70472.0	Mm.221758	NM_027435	ENSMUSG00000022360	Atad2	2610509G12Rik	ATPase family, AAA domain containing 2	protein-coding	2.39700248454487	2.21293292079245	2.50570182665274	1.29386242215827	2.32397348689525	1.36691204168837	2.71967140615857	2.9995186732603	0.661597043814921	0.498148408583409	0.936897994490085
Merged-chr17-35148920-2	chr17	35148818	35149018	+	815.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_020027)	TTS (NM_020027)	13204.0	NM_001252469	224727.0	Mm.203962	NM_057171	ENSMUSG00000024392	Bag6	2410045D21Rik|AA408914|BAG-6|Bat3|D17H6S52E|G3|Scythe	BCL2-associated athanogene 6	protein-coding	0.700567160057143	1.2988558788797	0.432415001040876	0.425827011427878	0.929265376328041	0.823438263039018	0.434291600359151	0.754651562757502	-0.155601797052022	0.926510439498997	1
Merged-chr1-161878166-1	chr1	161878066	161878266	+	569.0	f1_c57bl6.idr	Intergenic	L1MA6|LINE|L1	-1484.0	NM_001357402	226551.0	Mm.170002	NM_172645	ENSMUSG00000040297	Suco	4732491B11|AI848100|AU016931|Opt	SUN domain containing ossification factor	protein-coding	1.3422032754121	1.05705657412167	1.73949283762727	1.68856775559786	1.72266675047727	1.06132950360654	1.98498043769483	2.25385768673386	1.07839855281803	0.359947492034366	0.856306289008338
Merged-chr15-79437988-2	chr15	79437888	79438088	+	754.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359863, intron 2 of 10)	intron (NM_001359863, intron 2 of 10)	3830.0	NM_001289899	27373.0	Mm.30199	NM_013767	ENSMUSG00000022433	Csnk1e	AI426939|AI551861|AW457082|CK1epsilon|CKIe|KC1epsilon|tau	casein kinase 1, epsilon	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-74369150-2	chr1	74369036	74369236	+	1000.0	f0_balb.idr|f0_c57.idr	3' UTR (NM_001033345, exon 10 of 10)	3' UTR (NM_001033345, exon 10 of 10)	-6067.0	NM_013612	18173.0	Mm.2913	NM_013612	ENSMUSG00000026177	Slc11a1	Bcg|Ity|Ity1|Lsh|Nramp|Nramp1|ity	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55094941-4	chr14	55094811	55095011	+	875.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_153083, exon 1 of 2)	5' UTR (NM_153083, exon 1 of 2)	127.0	NM_153083	105663.0	Mm.319204	NM_153083	ENSMUSG00000045691	Thtpa	AW122966	thiamine triphosphatase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133130047-3	chr4	133129894	133130094	+	891.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153423)	promoter-TSS (NM_153423)	-639.0	NM_153423	242687.0	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	0.935524507068114	0.648039661554374	0.634960812406816	0.825716203483981	1.29558867210341	1.61216993560663	0.637867128534954	1.6563477396795	2.81877604132839	0.0702660289714503	0.398668891361662
Merged-chr10-51527107-4	chr10	51527046	51527246	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MuRRS4-int|LTR|ERV1	36248.0	NM_013532	14728.0	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3365215-4	chr12	3365116	3365316	+	963.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008445)	promoter-TSS (NM_008445)	84.0	NM_008445	16570.0	Mm.7688	NM_008445	ENSMUSG00000020668	Kif3c	mKIAA4058	kinesin family member 3C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128131528-4	chr10	128131412	128131612	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_019711, exon 13 of 13)	3' UTR (NM_019711, exon 13 of 13)	38729.0	NM_054078	116848.0	Mm.252213	NM_054078	ENSMUSG00000040054	Baz2a	AA415431|C030005G16Rik|C78388|Tip5|Walp3|mKIAA0314	bromodomain adjacent to zinc finger domain, 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80688041-4	chr10	80687944	80688144	+	953.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172457, intron 3 of 3)	B3|SINE|B2	-11751.0	NM_021462	17347.0	Mm.42126	NM_021462	ENSMUSG00000020190	Mknk2	2010016G11Rik|Gprk7|Mnk2	MAP kinase-interacting serine/threonine kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-164803189-2	chr2	164803089	164803289	+	920.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133240, intron 1 of 5)	intron (NM_133240, intron 1 of 5)	1692.0	NM_133240	170789.0	Mm.277878	NM_133240	ENSMUSG00000017307	Acot8	PTE-2|Pte1	acyl-CoA thioesterase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-79246469-3	chr18	79246398	79246598	+	677.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-137107.0	NM_053099	240427.0	Mm.312871	NM_053099	ENSMUSG00000024548	Setbp1	C130092E12|Seb|mKIAA0437	SET binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-172335964-4	chr1	172335866	172336066	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5244.0	NM_001039484	16513.0	Mm.254563	NM_020269	ENSMUSG00000044708	Kcnj10	BIR10|BIRK-1|Kir1.2|Kir4.1	potassium inwardly-rectifying channel, subfamily J, member 10	protein-coding	1.43490395926688	2.66145510986972	3.16548413248457	1.93527700192184	1.44798151405896	2.26881256503779	3.53651658296898	1.94642000085257	0.185883238824565	0.845143994050235	0.998431161219273
Merged-chr9-20875244-2	chr9	20875144	20875344	+	873.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_175687)	TTS (NM_175687)	4466.0	NM_145154	70726.0	Mm.34019	NM_145154	ENSMUSG00000038742	Angptl6	6330404E11Rik|AGF|ARP3|Arp5	angiopoietin-like 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-21992337-4	chr3	21992259	21992459	+	888.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-84293.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-113669817-7	chr6	113669724	113669924	+	878.9285890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172161, intron 3 of 12)	intron (NM_172161, intron 3 of 12)	-27226.0	NM_001347356	381801.0	Mm.333322	NM_001033463	ENSMUSG00000056952	Tatdn2	AI646012|mKIAA0218	TatD DNase domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-113218089-4	chr12	113217984	113218184	+	886.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32181.0	NM_153776	69195.0	Mm.313244	NM_153776	ENSMUSG00000049036	Tmem121	2410008J05Rik|Hole	transmembrane protein 121	protein-coding	2.50465850613532	2.04571920515673	3.92655820903337	3.03840854869201	4.67798231959378	3.38326671944285	3.694909902144	3.50819093608271	1.28099657600823	0.0497136874871682	0.325019360048969
Merged-chr8-70629940-4	chr8	70629841	70630041	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001330687, exon 3 of 3)	exon (NM_001330687, exon 3 of 3)	2154.0	NM_011819	23886.0	Mm.31325	NM_011819	ENSMUSG00000038508	Gdf15	MIC-1|NAG-1|SBF	growth differentiation factor 15	protein-coding	6.45300887250549	6.60634176510973	6.9560985921968	6.80527061457354	6.18798657840136	6.05687554878241	5.13167307048726	5.71573924177618	-0.957119122574461	9.76218651395498e-05	0.00304488857351209
Merged-chr17-26493513-1	chr17	26493413	26493613	+	596.0	f1_balb.idr	Intergenic	Lx5|LINE|L1	14959.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-116466852-2	chr4	116466752	116466952	+	617.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2671.0	NM_008641	17776.0	Mm.9287	NM_008641	ENSMUSG00000003810	Mast2	MAST205|Mtssk	microtubule associated serine/threonine kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-109456523-3	chr3	109456417	109456617	+	772.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020505, intron 2 of 26)	intron (NM_020505, intron 2 of 26)	115834.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	-0.764648945392083	-0.754086259354115	-0.757544880642854	-0.760214620353687	-0.482139607878127	-0.753306916925858	-0.0548312926197707	-0.759748144135135	3.28066214419949	0.252943705171362	1
Merged-chr17-53587251-4	chr17	53587154	53587354	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001190846, intron 1 of 17)	intron (NM_001190846, intron 1 of 17)	3128.0	NM_001190846	18519.0	Mm.255025	NM_020005	ENSMUSG00000000708	Kat2b	A930006P13Rik|AI461839|AW536563|Pcaf|p/CAF	K(lysine) acetyltransferase 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-84422018-2	chr1	84421918	84422118	+	732.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_152915, intron 8 of 12)	MTC|LTR|ERVL-MaLR	-137373.0	NM_001003948	98496.0	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4|P-CLI1	phosphotyrosine interaction domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35077148-2	chr17	35077048	35077248	+	649.833374	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_027366, exon 1 of 3)	5' UTR (NM_027366, exon 1 of 3)	206.0	NM_027366	70274.0	Mm.250491	NM_027366	ENSMUSG00000013766	Ly6g6e	2310011I02Rik|G6e	lymphocyte antigen 6 complex, locus G6E	protein-coding	2.02415004192289	0.980937435905581	1.82567565324088	0.942892108086709	2.30853412610079	1.45328702311625	1.84173542857511	0.945866976801538	0.565409946416934	0.6650714861416	0.992297564393899
Merged-chr11-101969046-4	chr11	101968948	101969148	+	882.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2033.0	NM_024449	74499.0	Mm.265602	NM_024449	ENSMUSG00000001494	Sost	5430411E23Rik	sclerostin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-93650243-4	chr14	93650162	93650362	+	907.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081377, intron 2 of 4)	intron (NM_001081377, intron 2 of 4)	240407.0	NM_001271800	211712.0	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding	3.48498497766391	3.52754123867819	3.17483983360336	3.98338733480859	1.99044035454321	1.48615165414968	2.66955257562634	1.37589422044277	-2.95776901995559	0.000161919584145056	0.00456035486049856
Merged-chr3-127628181-1	chr3	127628081	127628281	+	545.0	f1_balb.idr	Intergenic	Intergenic	-4955.0	NM_009718	11924.0	Mm.42017	NM_009718	ENSMUSG00000027967	Neurog2	Atoh4|Math4A|bHLHa8|ngn-2|ngn2	neurogenin 2	protein-coding	0.519854890832061	0.550130325135218	1.15704885071345	1.11371844631827	0.521773991419044	1.33939744622578	0.740531303301268	1.00464129050417	0.315521202050442	0.846727788664467	0.998431161219273
Merged-chr8-120364550-4	chr8	120364451	120364651	+	910.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-124315.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-20228075-3	chr5	20227969	20228169	+	813.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170746, intron 5 of 22)	intron (NM_001170746, intron 5 of 22)	320551.0	NM_015823	50791.0	Mm.332231	NM_015823	ENSMUSG00000040003	Magi2	AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705	membrane associated guanylate kinase, WW and PDZ domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123508330-4	chr5	123508256	123508456	+	930.866699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001289822)	TTS (NM_001289822)	-2104.0	NM_198611	231727.0	Mm.484068	NM_198611	ENSMUSG00000029431	B3gnt4	1010001G17Rik|BGnT-4	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 4	protein-coding	0.744091599286302	0.112981913923799	0.56810310633958	0.102206106179097	0.756888307910035	0.114350445077806	0.108245385413559	0.103027332156683	-0.662569895366119	0.760443746061541	1
Merged-chr7-48749402-4	chr7	48749324	48749524	+	986.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39579.0	NM_028031	243983.0	Mm.279116	NM_028031	ENSMUSG00000030471	Zdhhc13	2410004E01Rik|C530010M18|HIP3RP|Hip14l|kojak|skc4	zinc finger, DHHC domain containing 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-39636362-3	chr1	39636257	39636457	+	911.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_170597, intron 2 of 3)	intron (NM_170597, intron 2 of 3)	14825.0	NM_170597	263764.0	Mm.122091	NM_170597	ENSMUSG00000050967	Creg2	A830098L22Rik	cellular repressor of E1A-stimulated genes 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-84701643-3	chr17	84701532	84701732	+	751.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18511.0	NM_026180	67470.0	Mm.26581	NM_026180	ENSMUSG00000024254	Abcg8	1300003C16Rik|AI114946|sterolin-2	ATP binding cassette subfamily G member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-32987927-4	chr19	32987839	32988039	+	914.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-169173.0	NR_039552	100628575.0		NR_039552	ENSMUSG00000106278	Mir3970	mmu-mir-3970|mu-mir-3970	microRNA 3970	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166485247-2	chr2	166485147	166485347	+	863.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37796.0	NR_015558	319684.0	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-40630831-4	chr19	40630725	40630925	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304721, intron 1 of 9)	L1MDa|LINE|L1	18459.0	NM_001304721	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80099010-2	chr7	80098910	80099110	+	558.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_173011, exon 4 of 11)	exon (NM_173011, exon 4 of 11)	16340.0	NM_173011	269951.0	Mm.246432	NM_173011	ENSMUSG00000030541	Idh2	E430004F23|IDPm|Idh-2	isocitrate dehydrogenase 2 (NADP+), mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-28078167-2	chr18	28078067	28078267	+	557.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-481997.0	NR_045398	320624.0	Mm.50107	NR_045398		4930474G06Rik	-	RIKEN cDNA 4930474G06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114890246-4	chr11	114890167	114890367	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001347654, exon 1 of 7)	5' UTR (NM_001347654, exon 1 of 7)	226.0	NM_170758	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-34103239-2	chr18	34103139	34103339	+	806.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-96033.0	NM_013512	13824.0	Mm.3465	NM_013512	ENSMUSG00000024376	Epb41l4a	Epb4.1l4|Epb4.1l4a|NBL4	erythrocyte membrane protein band 4.1 like 4a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-43250893-4	chr7	43250794	43250994	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3B|LINE|L1	36855.0	NM_001177525	100170401.0		NM_001177525		EU599041	TU7	expressed sequence EU599041	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-75315622-4	chr4	75315529	75315729	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37337.0	NM_025849	66928.0	Mm.24332	NM_025849	ENSMUSG00000028398	Dmac1	1700027K24Rik|3110001D03Rik|Tmem261	distal membrane arm assembly complex 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-46619785-2	chr13	46619685	46619885	+	551.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026056, intron 7 of 12)	intron (NM_026056, intron 7 of 12)	-49737.0	NM_001033192	97863.0	Mm.275934	NM_001033192	ENSMUSG00000069237	Fam8a1	C78339	family with sequence similarity 8, member A1	protein-coding	-0.243361120452248	0.404563536092029	-0.233023383427132	-0.236903721113157	-0.0898738585523544	0.415847139340284	-0.231915367893862	-0.236225334446317	0.276650720706604	0.907814952730976	1
Merged-chr8-24395014-4	chr8	24394913	24395113	+	726.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43933.0	NM_026931	69068.0	Mm.25775	NM_026931	ENSMUSG00000056313	Tcim	1110065B09Rik|1810011O10Rik|AW121743|AW321058	transcriptional and immune response regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80749298-3	chr7	80749234	80749434	+	864.2777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016721, intron 14 of 37)	B2_Mm1a|SINE|B2	53997.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165916631-2	chr2	165916535	165916735	+	746.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-31797.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	-1.84303373260285	-1.81303463126392	-1.82210660711932	-1.82955859819738	-1.84092785115721	-1.81106869625141	-1.8200529106377	-1.54273750312762	1.50114612804783	0.670102668014672	1
Merged-chr10-7780239-3	chr10	7780154	7780354	+	812.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145418, intron 1 of 7)	intron (NM_145418, intron 1 of 7)	663.0	NM_145418	215751.0	Mm.471825	NM_145418	ENSMUSG00000040006	Ginm1	AA589616	glycoprotein integral membrane 1	protein-coding	1.90044873356646	1.90108616301466	1.83768232075805	2.2597794237995	1.71278535855517	1.17725282536996	1.56067041561604	1.66687235215267	-1.37746009280561	0.188612034834726	0.667146596763177
Merged-chr8-117241266-4	chr8	117241175	117241375	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	-15744.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21407276-1	chr9	21407176	21407376	+	544.0	f1_balb.idr	non-coding (NR_045742, exon 3 of 5)	non-coding (NR_045742, exon 3 of 5)	4444.0	NR_045742	330902.0	Mm.437044	NR_045742	ENSMUSG00000097665	Gm16853	4930565O14	predicted gene, 16853	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96058466-3	chr3	96058354	96058554	+	581.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013841)	promoter-TSS (NM_013841)	1.0	NM_013841	22365.0	Mm.263185	NM_013841	ENSMUSG00000015747	Vps45	AI462172|AW554165|mVps45	vacuolar protein sorting 45	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-67069406-4	chr6	67069304	67069504	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040278, intron 4 of 6)	Lx5|LINE|L1	-31997.0	NM_007836	13197.0	Mm.72235	NM_007836	ENSMUSG00000036390	Gadd45a	AA545191|Ddit1|GADD45	growth arrest and DNA-damage-inducible 45 alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-14054435-3	chr10	14054334	14054534	+	893.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358783, intron 2 of 12)	intron (NM_001358783, intron 2 of 12)	88055.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-23810015-2	chr18	23809915	23810115	+	887.7999880000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_153058, intron 1 of 6)	intron (NM_153058, intron 1 of 6)	6045.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27859867-2	chr17	27859767	27859967	+	594.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080769, intron 1 of 20)	intron (NM_001080769, intron 1 of 20)	3360.0	NM_001080769	224648.0	Mm.291291	NM_001080769	ENSMUSG00000039512	Uhrf1bp1	1110020K19Rik|AA408674|F830021D11Rik|mKIAA4127	UHRF1 (ICBP90) binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-38779197-1	chr12	38779097	38779297	+	1000.0	f0_c57.idr	promoter-TSS (NM_007960)	promoter-TSS (NM_007960)	-885.0	NM_001347379	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-42693545-3	chr7	42693411	42693611	+	651.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001008427)	promoter-TSS (NM_001008427)	-793.0	NM_001008427	434179.0	Mm.284947	NM_001008427	ENSMUSG00000069727	Zfp975	EG434179|Gm5595|mszf88	zinc finger protein 975	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-64617999-4	chr17	64617895	64618095	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008549, intron 1 of 21)	intron (NM_008549, intron 1 of 21)	16346.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-19311485-6	chr3	19311385	19311585	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001122759)	promoter-TSS (NM_001122759)	-163.0	NM_001122759	18583.0	Mm.355614	NM_008802	ENSMUSG00000069094	Pde7a	AU015378|AW047537	phosphodiesterase 7A	protein-coding	4.57523482037542	4.03307675490183	4.1523372695414	2.80730953158576	4.57693369690057	3.98903685420644	4.06297707178378	2.66856096653132	-0.0633089223918914	0.911691620589842	0.998431161219273
Merged-chr1-132054583-4	chr1	132054484	132054684	+	739.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114662, intron 3 of 9)	B3|SINE|B2	13478.0	NM_172510	213006.0	Mm.208445	NM_172510	ENSMUSG00000059149	Mfsd4a	A230072B04|A930031D07Rik|AI850289|Mfsd4	major facilitator superfamily domain containing 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-134060263-2	chr1	134060163	134060363	+	636.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18892.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120561150-2	chr8	120561050	120561250	+	607.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145896, intron 2 of 15)	intron (NM_001145896, intron 2 of 15)	22454.0	NR_106159	102466849.0		NR_106159	ENSMUSG00000098280	Mir7687	Gm27573|mmu-mir-7687	microRNA 7687	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-194984281-1	chr1	194984181	194984381	+	645.0	f0_balb.idr	Intergenic	Intergenic	-7322.0	NR_033564	320400.0	Mm.417608	NR_033564	ENSMUSG00000097325	Gm16897	C030002c11rik	predicted gene, 16897	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-114608337-1	chr5	114608237	114608437	+	578.0	f1_c57bl6.idr	intron (NM_001004180, intron 2 of 2)	intron (NM_001004180, intron 2 of 2)	40086.0	NM_001004180	433940.0	Mm.194212	NM_001004180	ENSMUSG00000041930	Fam222a	-	family with sequence similarity 222, member A	protein-coding	-1.32440223303897	-1.29339468673833	-0.717877708899544	-1.31276353204239	-1.32392690786997	-1.29109028300231	-1.30162128075409	-1.31119997543009	-2.49510383040271	0.470258445164311	1
Merged-chr7-27577134-4	chr7	27577019	27577219	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175107, intron 8 of 9)	Lx8|LINE|L1	-14433.0	NM_001110208	11652.0	Mm.177194	NM_007434	ENSMUSG00000004056	Akt2	2410016A19Rik|AW554154|PKB|PKBbeta	thymoma viral proto-oncogene 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118682869-2	chr9	118682787	118682987	+	767.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 13 of 27)	intron (NM_133721, intron 13 of 27)	-28805.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	1.34730006913988	0.793991309015861	0.777641979242439	1.15275180795701	1.56640495504498	2.08202207692917	1.49595234840784	0.767007725603407	1.9193418472523	0.170305679486614	0.637742678676777
Merged-chr14-47518842-2	chr14	47518742	47518942	+	720.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_027414, intron 4 of 5)	intron (NR_027414, intron 4 of 5)	46281.0	NM_001146085	78938.0	Mm.11935	NM_030236	ENSMUSG00000037536	Fbxo34	2900057B08Rik|5830426G16Rik	F-box protein 34	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-30014742-4	chr5	30014647	30014847	+	959.158325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001314054, intron 2 of 4)	intron (NM_001314054, intron 2 of 4)	1633.0	NM_031168	16193.0	Mm.1019	NM_031168	ENSMUSG00000025746	Il6	Il-6	interleukin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36556735-4	chr1	36556629	36556829	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304329, intron 1 of 14)	intron (NM_001304329, intron 1 of 14)	828.0	NM_001304330	20353.0	Mm.29558	NM_001126047	ENSMUSG00000026121	Sema4c	AI426163|M-Sema F|Semacl1|Semaf|Semai|sema I	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-121509773-4	chr2	121509672	121509872	+	911.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290987, intron 1 of 11)	intron (NM_001290987, intron 1 of 11)	3049.0	NM_001290986	241627.0	Mm.293284	NM_030234	ENSMUSG00000027242	Wdr76	5830411K18Rik|6030457D09|AA517836	WD repeat domain 76	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-37355787-4	chr13	37355691	37355891	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010745, intron 1 of 4)	intron (NM_010745, intron 1 of 4)	10446.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-104501852-2	chr3	104501752	104501952	+	924.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025067, intron 1 of 17)	ORR1E|LTR|ERVL-MaLR	10066.0	NM_001025067	269473.0	Mm.34855	NM_001025067	ENSMUSG00000032913	Lrig2	4632419I10Rik|BB096938|LIG-2	leucine-rich repeats and immunoglobulin-like domains 2	protein-coding	1.61988829867759	3.23525275596415	1.06198288042348	1.03166811841952	2.04754611404899	2.45897694303114	1.07038860128738	2.72833632433749	0.154742427372419	0.935233772812591	0.998431161219273
Merged-chr3-135600220-1	chr3	135600120	135600320	+	591.0	f1_c57bl6.idr	intron (NM_008689, intron 17 of 24)	intron (NM_008689, intron 17 of 24)	91327.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	0.555847064463819	0.202372948768708	0.859540589033899	0.719606607868224	0.454812571072103	0.20375227859262	0.197602599667179	0.19235370516819	-2.599105309929	0.197629792591967	1
Merged-chr18-69396440-2	chr18	69396336	69396536	+	659.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 3 of 19)	intron (NM_001361128, intron 3 of 19)	50276.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	2.5915694980442	2.03430699794873	1.35203786279506	2.18365598405617	1.97184519954891	2.57244806530077	2.58323174632187	2.19475861074283	0.531161682118396	0.563001146027336	0.960362415684079
Merged-chr14-111676046-4	chr14	111675907	111676107	+	827.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198865, intron 1 of 1)	CpG	892.0	NM_198865	75409.0	Mm.235097	NM_029273	ENSMUSG00000033214	Slitrk5	2610019D03Rik	SLIT and NTRK-like family, member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-109370043-3	chr11	109369955	109370155	+	796.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010303, intron 2 of 3)	intron (NM_010303, intron 2 of 3)	-6401.0	NR_038097	100036768.0	Mm.467767	NR_038097	ENSMUSG00000056687	Gm11696	-	predicted gene 11696	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126707877-4	chr7	126707790	126707990	+	924.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3074.0	NM_009898	12721.0	Mm.290482	NM_009898	ENSMUSG00000030707	Coro1a	Clabp|Lmb3|TACO|p57	coronin, actin binding protein 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64339501-1	chr5	64339401	64339601	+	816.0	f1_c57bl6.idr	intron (NM_001289514, intron 16 of 18)	intron (NM_001289514, intron 16 of 18)	109144.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	-0.176725251648877	-0.30392785137382	-0.308120215312281	-0.311349027658737	0.242910549594445	-0.302981671847786	0.260304209712693	-0.310785319166556	2.820817476955	0.251742092818627	1
Merged-chr6-41191110-4	chr6	41191019	41191219	+	839.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-111153.0	NM_011646	22074.0	Mm.383263	NM_011646	ENSMUSG00000054106	Try4	0910001B19Rik|Td	trypsin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-98281106-1	chr3	98281006	98281206	+	595.0	f1_c57bl6.idr	intron (NM_008256, intron 1 of 9)	intron (NM_008256, intron 1 of 9)	675.0	NM_008256	15360.0	Mm.289131	NM_008256	ENSMUSG00000027875	Hmgcs2	1300002P16|mHS	3-hydroxy-3-methylglutaryl-Coenzyme A synthase 2	protein-coding	0.388834697012955	-0.20363965584035	-0.209405514930644	0.725007996157834	-0.220241086631849	-0.202344954698847	-0.208130655385618	-0.213096255291835	-3.96412527825095	0.101605045280259	1
Merged-chr4-133276982-2	chr4	133276882	133277082	+	940.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_025667, intron 1 of 5)	intron (NM_025667, intron 1 of 5)	808.0	NM_025667	52174.0	Mm.244748	NM_025667	ENSMUSG00000028857	Tmem222	5730406H10Rik|AA409341|D4Ertd196e	transmembrane protein 222	protein-coding	-1.50874880059862	-1.47511716453926	-1.4852876488768	-1.49364198752927	-1.50638792193216	-0.992828729615453	-1.48298527415345	-1.4921465649048	2.3185461113984	0.50391666537493	1
Merged-chr1-37492401-3	chr1	37492334	37492534	+	900.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173870, intron 4 of 15)	intron (NM_173870, intron 4 of 15)	-3829.0	NR_024017	77633.0	Mm.483177	NR_024017	ENSMUSG00000103948	4930594C11Rik	-	G1 to S phase transition pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-125434145-4	chr5	125434046	125434246	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_203319)	promoter-TSS (NM_203319)	-98.0	NM_203319	208144.0	Mm.296385	NM_203319	ENSMUSG00000029480	Dhx37	Gm1050|Gm451|mKIAA1517	DEAH (Asp-Glu-Ala-His) box polypeptide 37	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81127768-3	chr10	81127659	81127859	+	952.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8512.0	NM_010731	16969.0	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-17097885-3	chr1	17097768	17097968	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020604)	promoter-TSS (NM_020604)	21.0	NM_020604	57339.0	Mm.143761	NM_020604	ENSMUSG00000042686	Jph1	JP-1|Jp1	junctophilin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-27165778-2	chr7	27165678	27165878	+	777.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357767)	promoter-TSS (NM_001357767)	-50.0	NM_001357767	112406.0	Mm.29978	NM_053208	ENSMUSG00000058709	Egln2	0610011A13Rik|C85656|Hif-p4h-1|Ier4|Phd1|SM-20	egl-9 family hypoxia-inducible factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-53876164-4	chr1	53876090	53876290	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001883, intron 17 of 28)	intron (NM_001001883, intron 17 of 28)	26766.0	NR_106149	102465783.0		NR_106149	ENSMUSG00000098443	Mir7681	Gm27806|mmu-mir-7681	microRNA 7681	ncRNA	3.04162497493938	3.63321456884381	3.7496890911896	1.48295151279907	2.61926241561093	2.95625322918604	2.06906382816008	3.22469116777391	-0.745187666124352	0.347409634546401	0.847509430458407
Merged-chr1-39443815-2	chr1	39443715	39443915	+	731.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357521, intron 1 of 19)	intron (NM_001357521, intron 1 of 19)	34932.0	NM_018775	54610.0	Mm.387293	NM_018775	ENSMUSG00000003134	Tbc1d8	AD3|HBLP1|VRP	TBC1 domain family, member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-7405290-4	chr4	7405214	7405414	+	876.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-155374.0	NR_040645	71510.0	Mm.410775	NR_040645	ENSMUSG00000086070	8430436N08Rik	-	RIKEN cDNA 8430436N08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-67053063-2	chr14	67052922	67053122	+	621.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360033, intron 2 of 10)	intron (NM_001360033, intron 2 of 10)	19449.0	NM_001360034	71978.0	Mm.273997	NM_028032	ENSMUSG00000022052	Ppp2r2a	2410004D02Rik|mKIAA1541	protein phosphatase 2, regulatory subunit B, alpha	protein-coding	1.14888380932355	1.61460989857318	2.05710952004872	1.50042684886504	0.793693694506766	0.850850399262815	1.90083792104651	0.817005932926036	-1.388225386971	0.31359031005482	0.81522774665592
Merged-chr13-83732844-2	chr13	83732744	83732944	+	572.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_152245, intron 2 of 3)	intron (NR_152245, intron 2 of 3)	351.0	NR_152246	320203.0	Mm.245636	NM_177100	ENSMUSG00000050334	C130071C03Rik	2810449C10Rik|ECONEXIN|EyeLinc1|Visc-1	RIKEN cDNA C130071C03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-61418366-2	chr10	61418266	61418466	+	677.125	f1_balb.idr|f1_c57bl6.idr	exon (NM_013611, exon 1 of 3)	exon (NM_013611, exon 1 of 3)	394.0	NM_013611	18119.0	Mm.57195	NM_013611	ENSMUSG00000037171	Nodal	Tg.413d	nodal	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-104239738-4	chr8	104239625	104239825	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045642, intron 4 of 8)	PB1D10|SINE|Alu	8833.0	NR_045642	57813.0	Mm.183110	NM_021028	ENSMUSG00000035824	Tk2	AU024611|mt-TK	thymidine kinase 2, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-36635544-2	chr16	36635444	36635644	+	613.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019388, intron 1 of 7)	intron (NM_019388, intron 1 of 7)	30533.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-99090115-4	chr9	99090006	99090206	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029094, intron 7 of 23)	intron (NM_029094, intron 7 of 23)	50105.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-120031567-2	chr4	120031467	120031667	+	558.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010657, intron 2 of 8)	intron (NM_010657, intron 2 of 8)	-129639.0	NM_007902	13615.0	Mm.284855	NM_007902	ENSMUSG00000028635	Edn2	ET-2|PPET2|VIC	endothelin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-100067608-4	chr12	100067508	100067708	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC4a|LINE|L1	-44723.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-121249944-4	chr9	121249861	121250061	+	969.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177589, intron 15 of 36)	intron (NM_177589, intron 15 of 36)	27211.0	NM_177589	209012.0	Mm.371804	NM_177589	ENSMUSG00000040936	Ulk4	4932415A06Rik|A730098P15	unc-51-like kinase 4	protein-coding	4.3077853164531	3.72334292486848	3.76174175731349	4.91242974137241	3.93470270872316	3.6573235768587	4.13251436611725	2.68079272181803	-0.781337556849154	0.137002332537656	0.577469500630244
Merged-chr17-29082139-4	chr17	29082033	29082233	+	963.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3007.0	NR_036469	100504267.0	Mm.438550	NR_036469	ENSMUSG00000085912	Trp53cor1	Gm16197|linc-p21|lincRNA-p21	tumor protein p53 pathway corepressor 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180412559-2	chr1	180412459	180412659	+	691.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081175, intron 2 of 7)	intron (NM_001081175, intron 2 of 7)	70945.0	NM_001081227	381310.0	Mm.44791	NM_001081227	ENSMUSG00000053963	Stum	6330403A02Rik|Gm10001|R75555	mechanosensory transduction mediator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-94550348-4	chr11	94550246	94550446	+	954.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1139.0	NM_001013381	237926.0	Mm.342275	NM_001013381	ENSMUSG00000039096	Rsad1	B430319G23|BC056485	radical S-adenosyl methionine domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-15709889-3	chr17	15709814	15710014	+	781.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007690, intron 2 of 35)	Lx7|LINE|L1	4947.0	NM_007690	12648.0	Mm.8137	NM_007690	ENSMUSG00000023852	Chd1	4930525N21Rik|AI851787|AW555109	chromodomain helicase DNA binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167014440-2	chr2	167014339	167014539	+	858.625	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153065)	promoter-TSS (NM_153065)	-874.0	NM_153065	228889.0	Mm.295031	NM_153065	ENSMUSG00000017999	Ddx27	C86129	DEAD (Asp-Glu-Ala-Asp) box polypeptide 27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-13239134-2	chr16	13239034	13239234	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17347.0	NM_001122667	239719.0	Mm.270643	NM_153588	ENSMUSG00000009569	Mkl2	Gt4-1|MRTF-B|Mrtfb|mKIAA1243	MKL/myocardin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-84180218-4	chr11	84180134	84180334	+	979.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-12758.0	NM_001037932	628813.0	Mm.390389	NM_001037932	ENSMUSG00000051452	Gm11437	AI463690	predicted gene 11437	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-138659955-2	chr2	138659855	138660055	+	669.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-159974.0	NR_035477	100316816.0		NR_035477	ENSMUSG00000088983	Mir1952	mmu-mir-1952	microRNA 1952	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-137687913-4	chr6	137687816	137688016	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38631.0	NM_007945	13860.0	Mm.235346	NM_007945	ENSMUSG00000015766	Eps8	AW261790	epidermal growth factor receptor pathway substrate 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-58347780-1	chr15	58347680	58347880	+	683.0	f1_balb.idr	intron (NM_027211, intron 7 of 8)	intron (NM_027211, intron 7 of 8)	-23611.0	NM_177755	268807.0	Mm.124498	NM_177755	ENSMUSG00000022357	Klhl38	8230402K04Rik	kelch-like 38	protein-coding	-2.18292257394068	-2.15545247547656	-2.03304972317742	-2.17058342868585	-2.18099422382073	-2.1536522739386	-2.16187909550322	-2.16936197735154	-0.683654500252594	0.846597994014493	1
Merged-chr14-63087858-2	chr14	63087758	63087958	+	835.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32785.0	NR_046019	72609.0	Mm.387101	NR_046019		2700070H01Rik	-	RIKEN cDNA 2700070H01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-52953380-2	chr2	52953280	52953480	+	799.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	95512.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114879834-4	chr11	114879736	114879936	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10205.0	NM_001347654	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-82863673-3	chr6	82863581	82863781	+	847.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18172.0	NR_040520	69652.0	Mm.96357	NR_040520	ENSMUSG00000100291	2310069B03Rik	-	RIKEN cDNA 2310069B03 gene	ncRNA	0.0753969220690701	0.113996563652619	1.38703268789818	0.0920336967160233	0.0779152898888875	0.116711293465907	1.40597999102608	0.0937458192319581	0.0413660174825526	0.98997745679989	0.998431161219273
Merged-chr11-6214259-1	chr11	6214159	6214359	+	541.0	f1_c57bl6.idr	intron (NM_207242, intron 17 of 18)	intron (NM_207242, intron 17 of 18)	-13808.0	NM_173748	209586.0	Mm.25321	NM_173748	ENSMUSG00000053838	Nudcd3	AI427847|BC024322|mKIAA1068	NudC domain containing 3	protein-coding	0.445209673446244	1.28586681629209	0.985568929892411	0.458911546530452	0.447264690628649	1.29964420696402	0.996459954802601	0.460338468849082	0.0399650996303294	0.981831851919169	0.998431161219273
Merged-chr17-84128069-2	chr17	84127969	84128169	+	733.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	49409.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-161035059-4	chr1	161034966	161035166	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_151478)	promoter-TSS (NR_151478)	150.0	NR_153812	14455.0	Mm.270065	NR_002840	ENSMUSG00000053332	Gas5	Gas-5|Mir5117|Snhg2	growth arrest specific 5	ncRNA	6.29142284812335	5.51388063660533	6.06447689871114	6.02279706997178	6.63701071260535	5.85078478872697	6.39019637721607	6.64236127359127	0.449446101042501	0.070117772493984	0.398455810411819
Merged-chr5-17821623-4	chr5	17821520	17821720	+	976.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159557, intron 4 of 15)	intron (NM_001159557, intron 4 of 15)	14276.0	NM_001159555	12491.0	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 molecule	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-113691230-4	chr6	113691121	113691321	+	929.31665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 11 of 11)	intron (NM_001113553, intron 11 of 11)	-5829.0	NM_001347356	381801.0	Mm.333322	NM_001033463	ENSMUSG00000056952	Tatdn2	AI646012|mKIAA0218	TatD DNase domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-80641454-4	chr1	80641357	80641557	+	946.7666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175291, intron 2 of 55)	intron (NM_175291, intron 2 of 55)	23895.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-121927787-1	chr14	121927687	121927887	+	939.0	f1_balb.idr	intron (NM_026861, intron 4 of 8)	intron (NM_026861, intron 4 of 8)	-12013.0	NM_182806	110168.0	Mm.37405	NM_182806	ENSMUSG00000050350	Gpr18	-	G protein-coupled receptor 18	protein-coding	1.88539925586292	2.9551712878254	2.19094729708536	1.20951309775431	2.71220361677839	2.5324753558284	1.51149606130016	1.67584242658185	-0.00432165204881351	0.996597235721154	0.99920671037736
Merged-chr7-43353332-4	chr7	43353253	43353453	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145581, intron 5 of 9)	intron (NM_145581, intron 5 of 9)	2012.0	NM_145581	233186.0	Mm.290569	NM_145581	ENSMUSG00000039013	Siglecf	Siglec5|mSiglec-F	sialic acid binding Ig-like lectin F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-3713686-2	chr16	3713586	3713786	+	731.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001161790, exon 3 of 9)	exon (NM_001161790, exon 3 of 9)	4438.0	NM_001161790	54483.0	Mm.143718	NM_019453	ENSMUSG00000022534	Mefv	FMF|TRIM20|pyrin	Mediterranean fever	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-114079929-2	chr7	114079829	114080029	+	945.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025846, intron 1 of 5)	intron (NM_025846, intron 1 of 5)	37852.0	NM_025846	66922.0	Mm.276572	NM_025846	ENSMUSG00000055723	Rras2	2610016H24Rik|C86394|TC21	related RAS viral (r-ras) oncogene 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165969685-3	chr2	165969572	165969772	+	801.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22965.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27013086-2	chr17	27012986	27013186	+	754.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4949.0	NM_001251881	70772.0	Mm.440437	NM_027544	ENSMUSG00000048731	Ggnbp1	0610031G08Rik|mdf	gametogenetin binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-73452421-3	chr7	73452318	73452518	+	571.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081345, intron 32 of 38)	intron (NM_001081345, intron 32 of 38)	-76644.0	NR_040324	319783.0	Mm.349813	NR_040324	ENSMUSG00000097756	A730056A06Rik	C76391	RIKEN cDNA A730056A06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76723867-4	chr15	76723774	76723974	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_176828)	promoter-TSS (NM_176828)	-29.0	NM_176828	223665.0	Mm.291713	NM_145472	ENSMUSG00000116138	C030006K11Rik	1110033I13Rik	RIKEN cDNA C030006K11 gene	protein-coding	3.99402735850003	4.47156671609639	4.96850167134593	4.51949778420951	3.77345034184535	4.61746950824265	4.88876191896557	5.46435619166174	0.355499711938595	0.410764301093512	0.894256659801134
Merged-chr16-76293897-2	chr16	76293797	76293997	+	876.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_173440, exon 4 of 4)	exon (NM_173440, exon 4 of 4)	79152.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-148482894-2	chr5	148482794	148482994	+	610.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A2|LTR|ERVL-MaLR	68779.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-97575473-2	chr15	97575373	97575573	+	653.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	130349.0	NM_028003	71919.0	Mm.12255	NM_028003	ENSMUSG00000022466	Rpap3	2310042P20Rik|D15Ertd682e	RNA polymerase II associated protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-27184566-2	chr14	27184466	27184666	+	983.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289686, intron 2 of 12)	intron (NM_001289686, intron 2 of 12)	40573.0	NM_001289686	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-8114344-4	chr14	8114250	8114450	+	928.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360314, intron 1 of 19)	intron (NM_001360314, intron 1 of 19)	16139.0	NM_001360315	218699.0	Mm.29515	NM_145458	ENSMUSG00000033885	Pxk	C230080L11Rik|D14Ertd813e|Monaka|Slob	PX domain containing serine/threonine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102469570-4	chr12	102469462	102469662	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013747)	promoter-TSS (NM_013747)	-348.0	NM_013747	27277.0	Mm.273370	NM_013747	ENSMUSG00000021192	Golga5	Ret-II	golgi autoantigen, golgin subfamily a, 5	protein-coding	6.41990811957296	4.98339636511521	6.36321225322372	6.62503653630943	6.33865761644297	5.01855483762867	6.52438728732334	6.62581389957543	0.0302508492659948	0.952822267801573	0.998431161219273
Merged-chr17-26465195-4	chr17	26465086	26465286	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43286.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	7.43566987982627	7.29527717843822	7.22435560432017	7.24234649175867	5.46717462815181	6.3332869431718	5.64754220665492	5.43763345945622	-1.65571375653456	1.52982020453455e-14	7.64782617250229e-12
Merged-chr1-136128149-3	chr1	136128042	136128242	+	661.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_046169, intron 2 of 2)	intron (NR_046169, intron 2 of 2)	3041.0	NR_046170	329253.0	Mm.487858	NR_046167	ENSMUSG00000086264	Gm15850	6530439I21	predicted gene 15850	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-125316798-3	chr10	125316708	125316908	+	710.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358496, intron 1 of 5)	ID_B1|SINE|B4	-7992.0	NM_001358915	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-84988079-4	chr15	84987985	84988185	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033273)	promoter-TSS (NM_001033273)	-114.0	NM_001033273	223739.0	Mm.323925	NM_001033273	ENSMUSG00000036046	5031439G07Rik	AW554572|mKIAA0930	RIKEN cDNA 5031439G07 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-78499292-3	chr9	78499187	78499387	+	638.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-17563.0	NM_010106	13627.0	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-55468374-2	chr13	55468288	55468488	+	654.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_001030296, intron 1 of 2)	B1F|SINE|Alu	4121.0	NM_001030296	432763.0	Mm.315457	NM_001030296	ENSMUSG00000034686	Prr7	XM_484263	proline rich 7 (synaptic)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-23290449-4	chr16	23290365	23290565	+	946.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252506)	promoter-TSS (NM_001252506)	-5.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-45772755-2	chr14	45772655	45772855	+	852.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-114612.0	NM_001042719	114874.0	Mm.121918	NM_176845	ENSMUSG00000037697	Ddhd1	Mir5131|PA-PLA1	DDHD domain containing 1	protein-coding	3.65377010980582	2.8136036212772	1.42476936203979	2.83595169377757	3.32182710261843	2.57402259275077	2.73624004711138	1.39095902107405	-0.403583676937078	0.659490535891027	0.989483215875849
Merged-chr18-60881512-4	chr18	60881406	60881606	+	906.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30734.0	NM_001038499	545260.0	Mm.20147	NM_001038499	ENSMUSG00000036412	Arsi	BC020108	arylsulfatase i	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-71439423-2	chr6	71439323	71439523	+	923.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355745, intron 1 of 9)	intron (NM_001355745, intron 1 of 9)	1214.0	NM_001355745	68477.0	Mm.28474	NM_024288	ENSMUSG00000002222	Rmnd5a	1110007A06Rik|AJ237586|AW125795|Gid2|MTA.D02.090	required for meiotic nuclear division 5 homolog A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-119604082-1	chr8	119603982	119604182	+	551.0	f1_balb.idr	intron (NM_021441, intron 2 of 14)	intron (NM_021441, intron 2 of 14)	1158.0	NM_021441	21341.0	Mm.41977	NM_021441	ENSMUSG00000031832	Taf1c	Tafi95|mTAFI95	TATA-box binding protein associated factor, RNA polymerase I, C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-60003139-4	chr10	60003034	60003234	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347451)	promoter-TSS (NM_001347451)	1.0	NM_001347451	52717.0	Mm.21793	NM_025514	ENSMUSG00000020107	Anapc16	2310005G07Rik|APC16|D10Ertd641e	anaphase promoting complex subunit 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64887236-4	chr5	64887135	64887335	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45464.0	NM_030682	21897.0	Mm.273024	NM_030682	ENSMUSG00000044827	Tlr1	-	toll-like receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-58715101-4	chr2	58714972	58715172	+	934.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289660, intron 1 of 7)	L1MA4A|LINE|L1	-40112.0	NM_001289659	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-51679942-1	chr12	51679842	51680042	+	807.0	f0_balb.idr	intron (NM_001172098, intron 1 of 15)	L1M4|LINE|L1	-11024.0	NM_001329699	11782.0	Mm.386749	NM_021710	ENSMUSG00000020955	Ap4s1	AI314282	adaptor-related protein complex AP-4, sigma 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-86918973-2	chr17	86918877	86919077	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001277980, intron 2 of 2)	B2_Mm2|SINE|B2	1629.0	NM_030104	78469.0	Mm.67234	NM_030104	ENSMUSG00000037689	Tmem247	1700090G07Rik	transmembrane protein 247	protein-coding	0.151236346983465	0.185260963637867	1.21401965229107	0.381238126677505	0.153432882770162	0.187682161685169	1.40408056839238	0.167315804112281	0.22804086875838	0.908445522360381	1
Merged-chr10-127288002-2	chr10	127287902	127288102	+	847.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347171, intron 1 of 12)	intron (NM_001347171, intron 1 of 12)	1016.0	NM_001347171	110962.0	Mm.372826	NM_033072	ENSMUSG00000025409	Mbd6	D10Wsu93e	methyl-CpG binding domain protein 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-132243070-4	chr7	132242963	132243163	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029935, intron 6 of 7)	intron (NM_029935, intron 6 of 7)	-72601.0	NR_028578	100043682.0	Mm.482794	NR_028578	ENSMUSG00000109270	Gm10584	-	predicted gene 10584	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-13784228-1	chr13	13784128	13784328	+	598.0	f0_balb.idr	promoter-TSS (NM_010317)	promoter-TSS (NM_010317)	-79.0	NM_010317	14706.0	Mm.215394	NM_010317	ENSMUSG00000021303	Gng4	-	guanine nucleotide binding protein (G protein), gamma 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-65697918-4	chr5	65697785	65697985	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081321)	promoter-TSS (NM_001081321)	-29.0	NM_001081321	71521.0	Mm.278974	NM_027818	ENSMUSG00000029202	Pds5a	9030416H16Rik|E230024D05Rik|mKIAA0648	PDS5 cohesin associated factor A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-35677164-2	chr5	35677064	35677264	+	562.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001042615, intron 1 of 6)	intron (NM_001042615, intron 1 of 6)	2616.0	NM_001042615	78558.0	Mm.274255	NM_030127	ENSMUSG00000029096	Htra3	2210021K23Rik|9530081K03Rik|Prsp|Tasp	HtrA serine peptidase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-48546439-1	chr6	48546339	48546539	+	644.0	f1_c57bl6.idr	Intergenic	Intergenic	-8360.0	NM_001110160	243371.0	Mm.290764	NM_177736	ENSMUSG00000073096	Lrrc61	BC027309	leucine rich repeat containing 61	protein-coding	2.96295495663366	1.60675495031543	1.07461844969069	2.36314788007965	2.16632538404894	1.39179440301811	1.56271651793126	1.30686764474501	-1.36504290300316	0.216468341864663	0.707423415387388
Merged-chr19-43617112-2	chr19	43617012	43617212	+	637.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4787.0	NM_008699	18089.0	Mm.56994	NM_008699	ENSMUSG00000044220	Nkx2-3	Nkx-2.3|Nkx2.3|tinman	NK2 homeobox 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-34524857-6	chr19	34524809	34525009	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021460, intron 1 of 9)	intron (NM_021460, intron 1 of 9)	2565.0	NM_001111100	16889.0	Mm.157545	NM_021460	ENSMUSG00000024781	Lipa	AA960673|Lal|Lip-1|Lip1	lysosomal acid lipase A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-111692157-2	chr2	111692057	111692257	+	794.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033534, exon 4 of 4)	non-coding (NR_033534, exon 4 of 4)	24720.0	NR_033534	258199.0	Mm.437874	NR_033534	ENSMUSG00000109389	Olfr1300-ps1	MOR248-12	olfactory receptor 1300, pseudogene 1	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-81705407-4	chr17	81705274	81705474	+	890.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 1 of 8)	intron (NR_104580, intron 1 of 8)	33013.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-9572064-4	chr15	9571974	9572174	+	879.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42198.0	NM_008372	16197.0	Mm.389	NM_008372	ENSMUSG00000003882	Il7r	CD127|IL-7Ralpha	interleukin 7 receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80802823-1	chr7	80802723	80802923	+	1000.0	f0_balb.idr	intron (NM_016721, intron 1 of 37)	intron (NM_016721, intron 1 of 37)	508.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-145341962-4	chr6	145341868	145342068	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45657.0	NR_003625	381827.0	Mm.179075	NM_001001987		1700073E17Rik	-	ribosomal protein L7 pseudogene	pseudo	5.19530829722608	5.4932542780137	5.6150703536176	5.23495201174951	5.15176774249546	5.12911442752693	5.57301723242627	5.42921575215125	-0.0664740248414045	0.815230529879087	0.998431161219273
Merged-chr8-13648584-4	chr8	13648485	13648685	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 1 of 23)	(TTCCC)n|Simple_repeat|Simple_repeat	29002.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-58036252-2	chr2	58036152	58036352	+	830.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_172855, intron 9 of 9)	MTE2a|LTR|ERVL-MaLR	16500.0	NM_029972	77767.0	Mm.91712	NM_029972	ENSMUSG00000026830	Ermn	A330104H05Rik|AI854460|ermin|mKIAA1189	ermin, ERM-like protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-75059104-2	chr14	75059004	75059204	+	577.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_030568, intron 2 of 3)	intron (NR_030568, intron 2 of 3)	43077.0	NM_198642	271221.0	Mm.320280	NM_198642	ENSMUSG00000034959	Rubcnl	5031414D18Rik|Gm744|Gm911|Kiaa0226l	RUN and cysteine rich domain containing beclin 1 interacting protein like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-25196825-4	chr2	25196746	25196946	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146115)	promoter-TSS (NM_146115)	-33.0	NM_146115	227612.0	Mm.119747	NM_146115	ENSMUSG00000059555	Tor4a	A830007P12Rik	torsin family 4, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-28037386-4	chr5	28037283	28037483	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34029.0	NM_153526	231070.0	Mm.30221	NM_153526	ENSMUSG00000045294	Insig1	1810013C12Rik|Insig-1	insulin induced gene 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-25376523-2	chr15	25376423	25376623	+	548.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027395, intron 1 of 1)	intron (NM_027395, intron 1 of 1)	37241.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-150156221-4	chr5	150156120	150156320	+	794.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-103710.0	NM_172887	320365.0	Mm.216590	NM_172887	ENSMUSG00000056602	Fry	13CDNA73|9330186A19Rik|AF346502|AI462658|C87180|D930046M03|cg003|mKIAA4143	FRY microtubule binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-95006755-4	chr11	95006641	95006841	+	891.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172261, exon 10 of 10)	3' UTR (NM_172261, exon 10 of 10)	-3138.0	NM_146025	217125.0	Mm.297199	NM_146025	ENSMUSG00000047181	Samd14	AI839049|AI854782|BC034054	sterile alpha motif domain containing 14	protein-coding	-1.53624506061781	-1.50498120743042	-1.36567403739569	-1.52220181915623	-1.2509067664531	-1.50293238927041	-1.51229537506134	-1.5208116794288	0.640753741356348	0.855918148133185	1
Merged-chr8-34876789-2	chr8	34876670	34876870	+	693.5	f0_balb.idr|f1_c57bl6.idr	intron (NM_175091, intron 5 of 26)	MTE2a|LTR|ERVL-MaLR	69160.0	NM_176933	319520.0	Mm.170276	NM_176933	ENSMUSG00000031530	Dusp4	2700078F24Rik|AI844617|BB104621|E130306H24Rik|MKP2	dual specificity phosphatase 4	protein-coding	1.24256116550734	0.686381936979576	1.26595993365257	1.32329881146084	0.944176975398328	0.688533523093505	0.866555261669874	1.11886017592038	-1.18274955125131	0.417276537379613	0.897326543579985
Merged-chr11-96915575-2	chr11	96915475	96915675	+	801.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_030248, intron 2 of 13)	B1_Mur2|SINE|Alu	939.0	NM_001308183	80280.0	Mm.28297	NM_030248	ENSMUSG00000018669	Cdk5rap3	1810007E24Rik|BC002318|C53|C81486|HSF-27|IC53|LZAP|MST016	CDK5 regulatory subunit associated protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-90076041-2	chr3	90075941	90076141	+	563.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_022314, intron 2 of 8)	intron (NM_022314, intron 2 of 8)	3390.0	NM_022314	59069.0	Mm.240839	NM_022314	ENSMUSG00000027940	Tpm3	TM30nm|TMnm|Tm5NM|Tpm-5|Tpm5|Trop-5|gamma-TM|hTM30nm|hTMnm	tropomyosin 3, gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-108248513-4	chr11	108248405	108248605	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011101, intron 2 of 16)	intron (NM_011101, intron 2 of 16)	95383.0	NM_011101	18750.0	Mm.222178	NM_011101	ENSMUSG00000050965	Prkca	AI875142|Pkca	protein kinase C, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-67043955-4	chr9	67043849	67044049	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164254)	promoter-TSS (NM_001164254)	-78.0	NM_001164256	22003.0	Mm.121878	NM_024427	ENSMUSG00000032366	Tpm1	AA986836|AI854628|TM2|TPM1kappa|Tm3|Tmpa|Tpm-1|alpha-TM	tropomyosin 1, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115278036-3	chr11	115277950	115278150	+	796.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1081.0	NM_007997	14149.0	Mm.4719	NM_007997	ENSMUSG00000018861	Fdxr	AR	ferredoxin reductase	protein-coding	1.75060732358984	1.0032701211987	2.25652289329618	1.63436005055145	1.43900540529099	1.61706446381628	1.56128734275612	0.972390037493734	-1.04884234086777	0.386652321425817	0.876478988598962
Merged-chr2-165529032-1	chr2	165528932	165529132	+	542.0	f1_balb.idr	Intergenic	Intergenic	25135.0	NM_130451	170441.0	Mm.34147	NM_130451	ENSMUSG00000027661	Slc2a10	AA450473|Glut10	solute carrier family 2 (facilitated glucose transporter), member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-14222295-2	chr2	14222195	14222395	+	557.166687	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001081310)	TTS (NM_001081310)	-7119.0	NM_008625	17533.0	Mm.2019	NM_008625	ENSMUSG00000026712	Mrc1	AW259686|CD206|MR	mannose receptor, C type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-44760358-4	chr16	44760258	44760458	+	952.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5378.0	NM_021325	57781.0	Mm.416152	NM_021325	ENSMUSG00000022667	Cd200r1	CD200R|Mox2r|OX2R	CD200 receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-111945753-2	chr13	111945653	111945853	+	679.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	77817.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-41438668-4	chr12	41438563	41438763	+	929.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053122, intron 4 of 6)	intron (NM_053122, intron 4 of 6)	47394.0	NM_001271708	16981.0	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-50098003-1	chr18	50097903	50098103	+	680.0	f1_c57bl6.idr	Intergenic	Intergenic	-30198.0	NM_008292	15488.0	Mm.277857	NM_008292	ENSMUSG00000024507	Hsd17b4	17-beta-HSD|17[b]-HSD|DBP|MFE-2|MFP2|MPF-2|Mfp-2|perMFE-2	hydroxysteroid (17-beta) dehydrogenase 4	protein-coding	2.29955554337793	2.28613278176511	0.949024827139259	1.68666380882508	0.899154017016731	1.25684991777048	0.954670088568843	2.38269128602512	-0.936841832774745	0.470622777354861	0.925762173358338
Merged-chr18-3329076-3	chr18	3328982	3329182	+	678.977783	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110851, intron 1 of 4)	B2_Mm1t|SINE|B2	-1491.0	NM_001110850	12916.0	Mm.5244	NM_013498	ENSMUSG00000063889	Crem	ICER|ICERI	cAMP responsive element modulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-103365607-5	chr15	103365532	103365732	+	854.2333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001314041, intron 1 of 30)	intron (NM_001314041, intron 1 of 30)	1159.0	NM_010577	16402.0	Mm.16234	NM_010577	ENSMUSG00000000555	Itga5	Cd49e|Fnra|VLA5	integrin alpha 5 (fibronectin receptor alpha)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-117518100-2	chr12	117518000	117518200	+	775.75	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_175930, exon 2 of 28)	5' UTR (NM_175930, exon 2 of 28)	1621.0	NM_175930	217944.0	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-87385602-1	chr6	87385502	87385702	+	547.0	f1_c57bl6.idr	intron (NM_026860, intron 3 of 5)	intron (NM_026860, intron 3 of 5)	3333.0	NM_026860	68888.0	Mm.46387	NM_026860	ENSMUSG00000030048	Gkn3	1190003M12Rik	gastrokine 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-155380474-1	chr2	155380374	155380574	+	609.0	f1_balb.idr	Intergenic	Intergenic	-1382.0	NM_178111	68728.0	Mm.293605	NM_178111	ENSMUSG00000038375	Trp53inp2	1110029F20Rik|Tp53inp2	transformation related protein 53 inducible nuclear protein 2	protein-coding	-0.289851946104314	-0.737899168765768	-0.740932179010924	-0.743264539078787	-0.280173431323445	-0.737213951634147	-0.740264187498491	-0.742857569821679	0.0418983010157508	0.98887086484455	1
Merged-chr3-89280141-1	chr3	89280041	89280241	+	704.0	f0_balb.idr	promoter-TSS (NM_010107)	promoter-TSS (NM_010107)	-496.0	NM_010107	13636.0	Mm.15675	NM_010107	ENSMUSG00000027954	Efna1	AI325262|B61|Efl1|Epl1|Eplg1|Lerk1	ephrin A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-121378014-2	chr5	121377914	121378114	+	738.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359947, intron 5 of 11)	intron (NM_001359947, intron 5 of 11)	7395.0	NM_001359947	231712.0	Mm.20488	NM_172275	ENSMUSG00000042726	Trafd1	1110008K06Rik|Fln29	TRAF type zinc finger domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-106760290-3	chr14	106760181	106760381	+	871.305542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-273761.0	NR_045938	73631.0	Mm.48862	NR_045938	ENSMUSG00000099794	1700128A07Rik	-	RIKEN cDNA 1700128A07 gene	ncRNA	2.08470878782236	3.11017313798141	3.21847546821641	2.5666960282375	2.34814167339263	2.5094811885183	1.44522867277581	2.47004191944568	-1.14474857139997	0.169440819200473	0.63642158770741
Merged-chr11-94585961-3	chr11	94585857	94586057	+	963.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153807, intron 1 of 15)	B3|SINE|B2	15829.0	NM_153807	264895.0	Mm.386885	NM_153807	ENSMUSG00000076435	Acsf2	-	acyl-CoA synthetase family member 2	protein-coding	0.823176130831178	1.53180723115528	0.867601349420521	1.98493914936303	1.20961760175661	1.83131088866854	0.872182230007194	2.23008611334538	0.725057338084549	0.592629960124899	0.970302164516722
Merged-chr14-106439488-1	chr14	106439388	106439588	+	662.0	f0_balb.idr	intron (NR_045938, intron 2 of 3)	intron (NR_045938, intron 2 of 3)	47032.0	NR_045938	73631.0	Mm.48862	NR_045938	ENSMUSG00000099794	1700128A07Rik	-	RIKEN cDNA 1700128A07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-143424074-4	chr5	143423978	143424178	+	977.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20258.0	NM_025841	66913.0	Mm.181880	NM_025841	ENSMUSG00000079111	Kdelr2	1110007A14Rik	KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-33353638-4	chr2	33353536	33353736	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290570, intron 1 of 16)	intron (NM_001290570, intron 1 of 16)	17858.0	NM_001290570	241308.0	Mm.274249	NM_175211	ENSMUSG00000038831	Ralgps1	5830418G11Rik|AI853783|AI854138|RALGEF2|RALGPS1A|RalGEF 2|mKIAA0351	Ral GEF with PH domain and SH3 binding motif 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127324707-4	chr10	127324609	127324809	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359657)	promoter-TSS (NM_001359657)	-933.0	NM_001359657	216445.0	Mm.227198	NM_146011	ENSMUSG00000040345	Arhgap9	AU043488	Rho GTPase activating protein 9	protein-coding	4.32418085174465	3.43376098826768	4.33773166175325	3.09406044914633	4.56954373896443	3.76600525085722	4.79468778301214	3.22712933477237	0.433682461897952	0.419623552994825	0.899498409000238
Merged-chr10-67534796-2	chr10	67534696	67534896	+	968.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-3073.0	NM_010118	13654.0	Mm.290421	NM_010118	ENSMUSG00000037868	Egr2	Egr-2|Krox-20|Krox20|NGF1-B|Zfp-25|Zfp-6	early growth response 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-122576464-3	chr6	122576357	122576557	+	878.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22648.0	NM_009645	11628.0	Mm.391503	NM_009645	ENSMUSG00000040627	Aicda	Aid|Arp2	activation-induced cytidine deaminase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-95861022-2	chr16	95860922	95861122	+	679.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_040484, intron 1 of 3)	intron (NR_040484, intron 1 of 3)	37691.0	NR_040485	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-110907944-2	chr2	110907844	110908044	+	721.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355246, intron 1 of 3)	RMER1C|Other|Other	42300.0	NM_001355246	228432.0	Mm.483325	NM_001081556	ENSMUSG00000074968	Ano3	AI838058|B230324K02Rik|Tmem16c	anoctamin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-10170116-3	chr8	10170012	10170212	+	770.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001319151, intron 1 of 34)	intron (NM_001319151, intron 1 of 34)	16201.0	NM_001319151	244281.0	Mm.422761	NM_001081397	ENSMUSG00000039057	Myo16	BM140241|C230040D10Rik|Gm1105|NYAP3|mKIAA0865	myosin XVI	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53111402-2	chr4	53111302	53111502	+	923.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 5 of 49)	intron (NM_013454, intron 5 of 49)	48493.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-36935397-3	chr15	36935284	36935484	+	911.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A1|LTR|ERVL-MaLR	72018.0	NM_026521	68036.0	Mm.371631	NM_026521	ENSMUSG00000062397	Zfp706	3110006P09Rik|AA793007|AW536850|C77232|Znf706	zinc finger protein 706	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-113611766-2	chr5	113611666	113611866	+	759.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001359060)	TTS (NM_001359060)	31837.0	NM_001359060	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-57328642-2	chr8	57328541	57328741	+	785.416626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3794.0	NR_131041	75996.0	Mm.399754	NR_131041	ENSMUSG00000097910	5033428I22Rik	-	RIKEN cDNA 5033428I22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-149792443-4	chr4	149792328	149792528	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18161.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-39056104-4	chr6	39056023	39056223	+	678.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 9 of 12)	intron (NM_011539, intron 9 of 12)	11463.0	NR_040523	69986.0	Mm.490941	NR_040523	ENSMUSG00000100121	1700025N23Rik	-	RIKEN cDNA 1700025N23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83054583-4	chr6	83054487	83054687	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007517)	promoter-TSS (NM_007517)	-16.0	NM_019752	64704.0	Mm.21880	NM_019752	ENSMUSG00000068329	Htra2	AI481710|Omi|Prss25|mnd2	HtrA serine peptidase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-9022808-4	chr13	9022707	9022907	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26795.0	NM_027000	69237.0	Mm.41800	NM_027000	ENSMUSG00000021149	Gtpbp4	2610028C09Rik|Crfg|Gtpbp3|NGB|Nog1	GTP binding protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-32619682-4	chr11	32619588	32619788	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 18 of 18)	intron (NM_009288, intron 18 of 18)	-22867.0	NM_001271348	103583.0	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	1.28187302499395	3.01507759367737	2.44550299247043	3.40352117675133	1.29343387233849	3.03818742517314	2.60120439273668	3.42073150888282	0.0810454326269914	0.931637418232549	0.998431161219273
Merged-chr2-80038159-1	chr2	80038059	80038259	+	551.0	f0_balb.idr	intron (NM_001355141, intron 2 of 15)	intron (NM_001355141, intron 2 of 15)	743.0	NM_001355142	18573.0	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-138157888-2	chr1	138157788	138157988	+	711.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001268286, intron 2 of 28)	intron (NM_001268286, intron 2 of 28)	17238.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-13560453-4	chr10	13560319	13560519	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025748, intron 3 of 5)	intron (NM_025748, intron 3 of 5)	-7277.0	NM_001347361	56535.0	Mm.282711	NM_019961	ENSMUSG00000019809	Pex3	1700014F15Rik|2810027F19Rik|2900010N04Rik	peroxisomal biogenesis factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-11617757-2	chr16	11617657	11617857	+	727.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028964, intron 15 of 20)	intron (NM_028964, intron 15 of 20)	-161945.0	NR_126430	73761.0	Mm.39183	NR_126430		4833415N18Rik	-	RIKEN cDNA 4833415N18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117818758-4	chr10	117818606	117818806	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024457, intron 5 of 7)	intron (NM_024457, intron 5 of 7)	-26001.0	NM_134010	103468.0	Mm.12568	NM_134010	ENSMUSG00000052798	Nup107	AW541137|C76801	nucleoporin 107	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132748932-4	chr4	132748851	132749051	+	990.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133888, intron 1 of 7)	intron (NM_133888, intron 1 of 7)	8220.0	NM_133888	100340.0	Mm.287187	NM_133888	ENSMUSG00000028885	Smpdl3b	1110054A24Rik|AU045240|Asml3b	sphingomyelin phosphodiesterase, acid-like 3B	protein-coding	2.06302539476401	2.05651258175874	1.47972217671548	1.58735460338919	1.39015306697144	1.53586224345748	1.77662114887858	1.2802521807754	-1.05616638210066	0.325275255194498	0.827782420413875
Merged-chr9-120011742-4	chr9	120011618	120011818	+	986.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	11880.0	NM_011724	22437.0	Mm.10117	NM_011724	ENSMUSG00000079243	Xirp1	AI415219|Cmya1	xin actin-binding repeat containing 1	protein-coding	-0.463792974921799	-0.602186254780073	-0.606121779139294	-0.609162675426911	-0.459698143633645	-0.601300044104547	0.198416202760725	-0.608631153007492	2.61004847724149	0.316169418323442	1
Merged-chr2-150872798-3	chr2	150872708	150872908	+	695.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151505, intron 1 of 12)	intron (NR_151505, intron 1 of 12)	-30238.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-59177269-2	chr6	59177169	59177369	+	591.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR15|LTR|ERVK	-31601.0	NM_001081145	68140.0	Mm.25843	NM_001081145	ENSMUSG00000049232	Tigd2	3632410O17Rik	tigger transposable element derived 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67594743-2	chr10	67594643	67594843	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	FordPrefect|DNA|hAT-Tip100	-22784.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126915123-3	chr8	126915023	126915223	+	622.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30798.0	NM_024214	67952.0	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-25600780-2	chr8	25600680	25600880	+	711.666687	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001308481)	promoter-TSS (NM_001308481)	-821.0	NM_001308481	234135.0	Mm.217337	NM_001001735	ENSMUSG00000054823	Nsd3	6720429E03|A530023P05|AI528490|WHISTLE|Whsc1l1	nuclear receptor binding SET domain protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-86415612-2	chr1	86415512	86415712	+	765.099976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10717.0	NM_027966	71863.0	Mm.179627	NM_027966	ENSMUSG00000036574	Tex44	1700019O17Rik	testis expressed 44	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-92828851-2	chr16	92828751	92828951	+	678.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2777.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-72492045-8	chr8	72491980	72492180	+	821.03125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177766, intron 1 of 5)	CpG	534.0	NM_177766	270066.0	Mm.291461	NM_177766	ENSMUSG00000019731	Slc35e1	6030458H05|AA408278	solute carrier family 35, member E1	protein-coding	2.73491226861819	3.77913116760834	3.72190570525777	2.99651034138525	3.12972220451405	2.30631918273116	3.68569870985897	3.20278236704212	-0.331706844808133	0.604451340443304	0.973889860145757
Merged-chr15-99812449-2	chr15	99812349	99812549	+	607.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113545, intron 4 of 10)	intron (NM_001113545, intron 4 of 10)	7700.0	NM_023063	65970.0	Mm.33207	NM_023063	ENSMUSG00000023022	Lima1	Eplin	LIM domain and actin binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-122653874-4	chr6	122653769	122653969	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27445.0	NM_139218	73708.0	Mm.27982	NM_139218	ENSMUSG00000046323	Dppa3	2410075G02Rik|PCG7|PGC7|Stella	developmental pluripotency-associated 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-172026734-1	chr1	172026634	172026834	+	619.0	f1_c57bl6.idr	intron (NM_033509, intron 1 of 7)	intron (NM_033509, intron 1 of 7)	561.0	NM_033509	93840.0	Mm.36148	NM_033509	ENSMUSG00000026556	Vangl2	C530001F03Rik|Lootl|Lp|Lpp1|Ltap|Vang1l2|loop-tail|ska17|ska<m17Jus>|stbm|strabismus	VANGL planar cell polarity 2	protein-coding	1.61204721695454	1.39961025669068	2.12779916889728	1.70601912692713	0.92291981254388	1.40973490048164	1.65554465860497	0.944659050040809	-1.65787005210182	0.183224842954411	0.658051785801345
Merged-chr1-152580227-2	chr1	152580127	152580327	+	682.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 3 of 17)	intron (NM_016846, intron 3 of 17)	44990.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-61086384-4	chr18	61086290	61086490	+	981.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-19182.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-83147930-2	chr15	83147830	83148030	+	951.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347082, intron 1 of 7)	intron (NM_001347082, intron 1 of 7)	1448.0	NM_178627	73826.0	Mm.23758	NM_178627	ENSMUSG00000041815	Poldip3	1110008P04Rik|AA408269|AL022852|C77954|PDIP46|SKAR|mKIAA1649	polymerase (DNA-directed), delta interacting protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-85593207-3	chr1	85593079	85593279	+	811.333313	f0_balb.idr|f1_balb.idr	intron (NM_030194, intron 3 of 11)	intron (NM_030194, intron 3 of 11)	5631.0	NM_030194	109032.0	Mm.335802	NM_030194	ENSMUSG00000070034	Sp110	5031415C07Rik|52kDa|5830484A20Rik|Ifi75|Ipr1	Sp110 nuclear body protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-83512409-4	chr4	83512280	83512480	+	879.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	A-rich|Low_complexity|Low_complexity	-13165.0	NM_001355549	320226.0	Mm.180032	NM_029117	ENSMUSG00000052407	Ccdc171	4930418J05Rik|4930473A06Rik|A330015D16Rik	coiled-coil domain containing 171	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-35053055-1	chr12	35052955	35053155	+	747.0	f1_c57bl6.idr	intron (NM_001014973, intron 1 of 25)	intron (NM_001014973, intron 1 of 25)	5866.0	NM_001014973	217463.0	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	-0.634503804247033	0.133813848429343	-0.62628525061586	-0.62936975079378	-0.633739003456245	-0.621398605481711	-0.273527281711446	-0.628830456742091	-1.42520201465403	0.615503948813685	1
Merged-chr6-16863132-5	chr6	16863052	16863252	+	816.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031198, intron 2 of 6)	MTE2a|LTR|ERVL-MaLR	35289.0	NM_031198	21426.0	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96246697-3	chr3	96246606	96246806	+	957.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178216).2	promoter-TSS (NM_178216).2	6.0	NM_054045	97114.0	Mm.358797	NM_054045	ENSMUSG00000081058	Hist2h3c2	H3-614|H3.2-614|Hist2h3c2-ps|Hist2h3ca1|M32461	histone cluster 2, H3c2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-31059332-4	chr7	31059258	31059458	+	927.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144556)	promoter-TSS (NM_144556)	-577.0	NM_144556	243914.0	Mm.389870	NM_144556	ENSMUSG00000036560	Lgi4	Lgil3|clp	leucine-rich repeat LGI family, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25682948-2	chr7	25682848	25683048	+	632.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172148, intron 1 of 2)	B1_Mur4|SINE|Alu	1790.0	NM_172148	232987.0	Mm.22849	NM_172148	ENSMUSG00000063439	B9d2	stumpy	B9 protein domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129595790-1	chr2	129595690	129595890	+	1000.0	f0_balb.idr	intron (NM_001355160, intron 1 of 7)	intron (NM_001355160, intron 1 of 7)	328.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	7.0464794231335	6.47264779436222	6.92277162819441	6.03428860100505	6.69258948493688	6.67403530807037	6.30516088785996	7.04143219491165	0.0287868064026189	0.903937287405443	0.998431161219273
Merged-chr12-17692153-4	chr12	17691979	17692179	+	942.2666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016677, intron 1 of 3)	intron (NM_016677, intron 1 of 3)	1270.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-7495153-2	chr13	7495053	7495253	+	851.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3A|LINE|L1	-707713.0	NM_001289530	94191.0	Mm.425794	NM_052977	ENSMUSG00000052551	Adarb2	Adar3|RED2	adenosine deaminase, RNA-specific, B2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-33211578-4	chr15	33211459	33211659	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018755, intron 2 of 8)	intron (NM_018755, intron 2 of 8)	128430.0	NM_176073	54381.0	Mm.158251	NM_018755	ENSMUSG00000039007	Cpq	1190003P12Rik|2610034C17Rik|Hls2|Lal-1|Pgcp	carboxypeptidase Q	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-35223208-4	chr4	35223108	35223308	+	978.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081343, intron 1 of 10)	intron (NM_001081343, intron 1 of 10)	2672.0	NM_001081343	73205.0	Mm.331544	NM_001081343	ENSMUSG00000028300	3110043O21Rik	AI840585|C9orf72	RIKEN cDNA 3110043O21 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180393239-4	chr1	180393130	180393330	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081175, intron 2 of 7)	intron (NM_001081175, intron 2 of 7)	-62681.0	NR_003623	277333.0	Mm.389223	NM_199472		Gm5069	EG277333	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-109985274-1	chr7	109985174	109985374	+	545.0	f1_c57bl6.idr	intron (NM_153525, intron 1 of 6)	B1_Mus1|SINE|Alu	956.0	NM_153525	233724.0	Mm.43212	NM_153525	ENSMUSG00000047554	Tmem41b	1500015G02Rik|1500031M19Rik|AU018901|D7Ertd70e|D7Ertd743e	transmembrane protein 41B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-112874292-2	chr12	112874192	112874392	+	908.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13376.0	NM_019925	56696.0	Mm.20455	NM_019925	ENSMUSG00000021298	Gpr132	G2a	G protein-coupled receptor 132	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-35802304-4	chr16	35802178	35802378	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152314, intron 3 of 8)	intron (NR_152314, intron 3 of 8)	31892.0	NM_175111	66667.0	Mm.45272	NM_175111	ENSMUSG00000022849	Hspbap1	3830421G21Rik	Hspb associated protein 1	protein-coding	2.75891024977606	2.53837564304908	2.1933636423984	2.90683932505809	2.2767281040446	1.70871407541536	1.39438787680148	2.84938360130071	-0.919941461753392	0.304721444884871	0.806210138838192
Merged-chr5-65199579-4	chr5	65199459	65199659	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153391)	promoter-TSS (NM_153391)	-137.0	NM_001359880	213081.0	Mm.127550	NM_153391	ENSMUSG00000037890	Wdr19	C330027H04Rik|D330023L08Rik|DYF2|Ift144|PWDMP|mKIAA1638	WD repeat domain 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-64281760-3	chr7	64281686	64281886	+	611.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14|LTR|ERV1	-5884.0	NM_172742	233315.0	Mm.214959	NM_172742	ENSMUSG00000030522	Mtmr10	BB128963|C79734	myotubularin related protein 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122718497-2	chr8	122718397	122718597	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	-19388.0	NM_009824	12398.0	Mm.194339	NM_009824	ENSMUSG00000006362	Cbfa2t3	A630044F12Rik|AI465270|AW229127|Cbfa2t3h|ETO-2|Eto2|MTGR2	core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-144288292-2	chr2	144288192	144288392	+	978.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17388.0	NM_001355688	74528.0	Mm.386817	NM_028984	ENSMUSG00000027424	Mgme1	8430406I07Rik|AI426476	mitochondrial genome maintenance exonuclease 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53120549-4	chr4	53120433	53120633	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 5 of 49)	intron (NM_013454, intron 5 of 49)	39362.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-32191347-2	chr17	32191247	32191447	+	665.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	-1877.0	NM_001347341	71932.0	Mm.176240	NM_001033163	ENSMUSG00000037577	Ephx3	2310063B19Rik|Abhd9|EH3	epoxide hydrolase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-30046578-2	chr4	30046478	30046678	+	893.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-618018.0	NR_040655	75332.0	Mm.108636	NR_040655		4930556G01Rik	-	RIKEN cDNA 4930556G01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46952872-2	chr8	46952772	46952972	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34015.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139329632-2	chr5	139329532	139329732	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	-4168.0	NM_172723	231821.0	Mm.297819	NM_172723	ENSMUSG00000056413	Adap1	4930431P11Rik|Centa1|GC1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-53289004-3	chr15	53288910	53289110	+	839.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	57173.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-85184480-4	chr10	85184399	85184599	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_007771, exon 1 of 13)	5' UTR (NM_007771, exon 1 of 13)	555.0	NM_007771	12952.0	Mm.26237	NM_007771	ENSMUSG00000020038	Cry1	AU020726|AU021000|Phll1	cryptochrome 1 (photolyase-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-103478158-4	chr14	103478051	103478251	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35190.0	NM_022886	64929.0	Mm.244003	NM_022886	ENSMUSG00000022123	Scel	9230114I02Rik	sciellin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-23466389-4	chr1	23466312	23466512	+	837.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-83237.0	NM_001081079	70155.0	Mm.28013	NM_001081079	ENSMUSG00000026158	Ogfrl1	2210417C17Rik	opioid growth factor receptor-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-9417303-2	chr5	9417203	9417403	+	571.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_153371, intron 4 of 21)	Lx8|LINE|L1	41599.0	NR_030537	100124492.0		NR_030537	ENSMUSG00000077896	Mir879	Mirn879|mir-879|mmu-mir-879	microRNA 879	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126848279-4	chr8	126848192	126848392	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_151740)	promoter-TSS (NR_151740)	-728.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-6311031-1	chr11	6310931	6311131	+	551.0	f1_c57bl6.idr	intron (NM_010956, intron 2 of 22)	intron (NM_010956, intron 2 of 22)	18452.0	NM_001361902	18293.0	Mm.276348	NM_010956	ENSMUSG00000020456	Ogdh	2210403E04Rik|2210412K19Rik|AA409584|d1401|mKIAA4192	oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-24619897-4	chr4	24619806	24620006	+	972.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355618, intron 9 of 9)	RMER15|LTR|ERVL	123455.0	NM_199467	212377.0	Mm.120919	NM_199467	ENSMUSG00000045751	Mms22l	F730047E07Rik|Gm134	MMS22-like, DNA repair protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-29493048-2	chr7	29492948	29493148	+	574.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081028, intron 2 of 22)	intron (NM_001081028, intron 2 of 22)	12412.0	NM_001081028	74206.0	Mm.447042	NM_001081028	ENSMUSG00000030583	Sipa1l3	2610511M17Rik	signal-induced proliferation-associated 1 like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-73971086-3	chr17	73970972	73971172	+	868.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20876.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-8913773-2	chr4	8913673	8913873	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	162449.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-73625390-1	chr18	73625290	73625490	+	541.0	f1_c57bl6.idr	Intergenic	Intergenic	52685.0	NM_001039214	240396.0	Mm.24131	NM_001039214	ENSMUSG00000037253	Mex3c	A130001D14Rik|BC035207|BM-013|Rkhd2	mex3 RNA binding family member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27916464-1	chr17	27916364	27916564	+	541.0	f1_balb.idr	intron (NM_181413, intron 1 of 24)	intron (NM_181413, intron 1 of 24)	7158.0	NM_181413	224650.0	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	0.929017298151537	1.23371034535431	0.970396235854011	1.85257996680104	1.55578662678771	1.61305523460408	1.81883944815555	2.20229166879049	1.67733922094127	0.172830370380384	0.640855159947368
Merged-chr6-22356206-4	chr6	22356106	22356306	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138587)	promoter-TSS (NM_138587)	-125.0	NM_138587	27999.0	Mm.490307	NM_138587	ENSMUSG00000029672	Fam3c	D6Wsu176e|Ilei	family with sequence similarity 3, member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-31131918-4	chr9	31131796	31131996	+	823.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011176)	promoter-TSS (NM_011176)	-97.0	NM_011176	19143.0	Mm.243926	NM_011176	ENSMUSG00000031995	St14	Epithin|MT-SP1|Prss14|Tmprss14|mCAP3|matriptase	suppression of tumorigenicity 14 (colon carcinoma)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5809076-4	chr19	5808956	5809156	+	972.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6384.0	NR_002847	72289.0	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69379741-2	chr11	69379591	69379791	+	596.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10265.0	NM_146019	216848.0	Mm.178246	NM_146019	ENSMUSG00000018474	Chd3	2600010P09Rik|AF020312|Chd7|Prp7|Prp9-1	chromodomain helicase DNA binding protein 3	protein-coding	-1.50408632163699	-1.47243681084455	-1.48200788414105	-1.18867649397355	-1.50186458449932	-1.47036271933452	-1.47984120293868	-1.33786588344523	-0.709784890658749	0.839804335673694	1
Merged-chr17-56183955-4	chr17	56183830	56184030	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080837)	promoter-TSS (NM_080837)	-10.0	NM_080837	28106.0	Mm.294870	NM_080837	ENSMUSG00000019579	Mydgf	D17Wsu104e|Il25|Ly6elg	myeloid derived growth factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70497895-4	chr11	70497784	70497984	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7390.0	NM_029360	75604.0	Mm.24400	NM_029360	ENSMUSG00000018919	Tm4sf5	2010003F10Rik|AI323987	transmembrane 4 superfamily member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-69366779-2	chr12	69366679	69366879	+	790.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5371.0	NM_007481	11845.0	Mm.27308	NM_007481	ENSMUSG00000044147	Arf6	AI788669|AW496366	ADP-ribosylation factor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-31557440-5	chr17	31557379	31557579	+	641.983337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7294.0	NR_027493	18771.0	Mm.259295	NM_016670	ENSMUSG00000006705	Pknox1	D17Wsu76e|PREP1	Pbx/knotted 1 homeobox	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-49182754-2	chr13	49182654	49182854	+	867.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4793.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-110412194-2	chr7	110412095	110412295	+	938.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177324, intron 16 of 40)	intron (NM_177324, intron 16 of 40)	190492.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43668171-2	chr4	43668071	43668271	+	638.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001085508)	promoter-TSS (NM_001085508)	688.0	NM_175517	242408.0	Mm.440423	NM_175517	ENSMUSG00000043633	Fam221b	4930412F15Rik	family with sequence similarity 221, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-34314223-4	chr13	34314123	34314323	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033167, intron 1 of 10)	intron (NM_001033167, intron 1 of 10)	30959.0	NM_001033167	73102.0	Mm.23932	NM_001033167	ENSMUSG00000038267	Slc22a23	3110004L20Rik	solute carrier family 22, member 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-65512916-9	chr18	65512983	65513183	+	885.4074099999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_105742, intron 3 of 6)	intron (NR_105742, intron 3 of 6)	-67147.0	NM_207255	328977.0	Mm.286232	NM_207255	ENSMUSG00000042439	Zfp532	C530030I18Rik|Znf532|mKIAA1629	zinc finger protein 532	protein-coding	0.711812062193656	0.941298925402507	0.906420587889804	0.879156355464858	0.948820749510933	1.08636878198114	0.589489670658864	1.00448355727467	0.344755774673622	0.812282486350683	1
Merged-chr3-148984637-1	chr3	148984537	148984737	+	554.0	f1_c57bl6.idr	Intergenic	Intergenic	-30002.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	-0.734697168562934	-1.28094420828655	-1.29131886204401	-1.29984091153697	-1.31008363841169	-1.2786959775384	-1.28897026783925	-1.29831546875223	-2.42902550944018	0.482518537989684	1
Merged-chr14-120409359-2	chr14	120409259	120409459	+	719.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360376, intron 8 of 8)	intron (NM_001360376, intron 8 of 8)	-69102.0	NM_029519	76108.0	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-29773525-4	chr17	29773423	29773623	+	878.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56506.0	NM_001163741	68597.0	Mm.390979	NM_026782	ENSMUSG00000024018	Ccdc167	1110021J02Rik	coiled-coil domain containing 167	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-58865389-4	chr2	58865288	58865488	+	875.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362394, intron 11 of 13)	RMER1B|Other|Other	110204.0	NM_029692	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4885042-2	chr16	4884942	4885142	+	719.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1058.0	NM_001357062	17237.0	Mm.291326	NM_029657	ENSMUSG00000022517	Mgrn1	2610042J20Rik|mKIAA0544|md|nc	mahogunin, ring finger 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88651823-4	chr3	88651704	88651904	+	941.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_181817)	TTS (NM_181817)	1338.0	NM_181817	242093.0	Mm.269130	NM_181817	ENSMUSG00000049741	Rxfp4	GPCR142|Gpr100|Rln3r2|SALPR	relaxin family peptide receptor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-162931332-6	chr2	162931209	162931409	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026499)	promoter-TSS (NM_026499)	-199.0	NM_026499	67996.0	Mm.24042	NM_026499	ENSMUSG00000016921	Srsf6	1210001E11Rik|AI314910|AW146126|Sfrs6	serine/arginine-rich splicing factor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-39505936-1	chr1	39505836	39506036	+	605.0	f0_balb.idr	Intergenic	Intergenic	-27181.0	NM_001357521	54610.0	Mm.387293	NM_018775	ENSMUSG00000003134	Tbc1d8	AD3|HBLP1|VRP	TBC1 domain family, member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71487858-4	chr8	71487757	71487957	+	969.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_032544)	promoter-TSS (NM_032544)	-246.0	NM_032544	70359.0	Mm.142112	NM_032544	ENSMUSG00000007610	Gtpbp3	2410009F13Rik|AI607903	GTP binding protein 3	protein-coding	2.55145597018551	2.14740942791748	1.1589081679312	2.12257871652704	2.02513912540654	1.19337647040856	2.58266060410133	1.38115031928812	-0.399652507093773	0.719478057143641	0.998431161219273
Merged-chr11-46806994-4	chr11	46806882	46807082	+	968.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3817.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44344718-2	chr9	44344618	44344818	+	658.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013551)	promoter-TSS (NM_013551)	-490.0	NM_013551	15288.0	Mm.247676	NM_013551	ENSMUSG00000032126	Hmbs	PBGD|T25658|Ups|Uros1	hydroxymethylbilane synthase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72552272-4	chr6	72552159	72552359	+	852.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271395, intron 1 of 9)	MER31A|LTR|ERV1	2612.0	NM_001271395	12332.0	Mm.18626	NM_007599	ENSMUSG00000056737	Capg	gCap39|mbh1	capping protein (actin filament), gelsolin-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-67884081-2	chr5	67883981	67884181	+	631.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36650.0	NM_001038999	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-69402193-4	chr18	69402107	69402307	+	892.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 3 of 19)	intron (NM_001361128, intron 3 of 19)	56047.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	3.1112626374369	1.57994626969401	2.72583093567848	3.00260001115154	2.631157518129	2.84037910690299	2.51004135326552	2.66331639365351	-0.150658475350452	0.847227037262045	0.998431161219273
Merged-chr5-145205310-4	chr5	145205194	145205394	+	977.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001167944, exon 1 of 4)	5' UTR (NM_001167944, exon 1 of 4)	735.0	NM_001359188	22757.0	Mm.332842	NM_016683	ENSMUSG00000055991	Zkscan5	AI132486|AI326970|Zfp95|hKraba1	zinc finger with KRAB and SCAN domains 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-4967399-4	chr6	4967301	4967501	+	867.0750119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181595, intron 2 of 15)	intron (NM_181595, intron 2 of 15)	64081.0	NM_181595	243725.0	Mm.332901	NM_181595	ENSMUSG00000032827	Ppp1r9a	2810430P21Rik|4930518N04Rik|5330407E15|A230094E16Rik|BB181831|NRB|mKIAA1222|neurabin-I	protein phosphatase 1, regulatory (inhibitor) subunit 9A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-9132312-4	chr16	9132220	9132420	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	302220.0	NM_001081400	69053.0	Mm.390868	NM_001081400	ENSMUSG00000022507	1810013L24Rik	1110017P05Rik|3010002C02Rik|AA792997|AW124177|Gm19906|R74903	RIKEN cDNA 1810013L24 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100850592-4	chr11	100850470	100850670	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113563)	promoter-TSS (NM_001113563)	15.0	NM_001113563	20851.0	Mm.34064	NM_011489	ENSMUSG00000020919	Stat5b	-	signal transducer and activator of transcription 5B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-34139930-2	chr7	34139830	34140030	+	730.166687	f1_balb.idr|f1_c57bl6.idr	TTS (NM_016682)	TTS (NM_016682)	-6662.0	NM_207212	101543.0	Mm.422738	NM_207212	ENSMUSG00000036459	Wtip	-	WT1-interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141065305-4	chr4	141065216	141065416	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4771.0	NM_001145958	230872.0	Mm.80685	NM_172122	ENSMUSG00000040860	Crocc	-	ciliary rootlet coiled-coil, rootletin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-87458630-2	chr6	87458530	87458730	+	568.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_175476)	TTS (NM_175476)	29636.0	NM_009756	12154.0	Mm.483321	NM_009756	ENSMUSG00000030046	Bmp10	b2b2711Clo	bone morphogenetic protein 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-195017262-2	chr1	195017162	195017362	+	660.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015566)	promoter-TSS (NR_015566)	-137.0	NR_015566	320977.0	Mm.99905	NR_015566	ENSMUSG00000096929	A330023F24Rik	C030002C11Rik	RIKEN cDNA A330023F24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-150750837-4	chr2	150750719	150750919	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355068, intron 1 of 13)	intron (NM_001355068, intron 1 of 13)	1738.0	NM_172117	12497.0	Mm.275524	NM_172117	ENSMUSG00000033068	Entpd6	2700026H11Rik|Cd39l2|NTPDase-6	ectonucleoside triphosphate diphosphohydrolase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-76052177-4	chr14	76052081	76052281	+	853.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14|LTR|ERV1	-41316.0	NM_026816	68705.0	Mm.20415	NM_026816	ENSMUSG00000067995	Gtf2f2	1110031C13Rik|AI326315	general transcription factor IIF, polypeptide 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-90198386-2	chr16	90198286	90198486	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22356.0	NM_011434	20655.0	Mm.276325	NM_011434	ENSMUSG00000022982	Sod1	B430204E11Rik|Cu/Zn-SOD|CuZnSOD|Ipo-1|Ipo1|SODC|Sod-1	superoxide dismutase 1, soluble	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-19575481-1	chr10	19575381	19575581	+	656.75	f0_balb.idr	Intergenic	Lx6|LINE|L1	-16468.0	NM_010511	15979.0	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-156352356-3	chr2	156352272	156352472	+	669.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027585, intron 8 of 12)	intron (NM_027585, intron 8 of 12)	-39668.0	NM_020255	19018.0	Mm.389346	NM_020255	ENSMUSG00000046229	Scand1	2310003H23Rik|Leap1|PGC-2|Ppargc2	SCAN domain-containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72534274-4	chr6	72534155	72534355	+	879.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10136.0	NM_007599	12332.0	Mm.18626	NM_007599	ENSMUSG00000056737	Capg	gCap39|mbh1	capping protein (actin filament), gelsolin-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-54571932-2	chr13	54571832	54572032	+	548.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3081.0	NM_019968	56795.0	Mm.89484	NM_019968	ENSMUSG00000025870	Arl10	Arl10a|Arm1	ADP-ribosylation factor-like 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-143293849-4	chr6	143293759	143293959	+	890.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027803, intron 3 of 3)	intron (NR_027803, intron 3 of 3)	47971.0	NR_027803	52285.0	Mm.354898	NM_001033129		D6Ertd474e	1700001I24Rik|AU023129	DNA segment, Chr 6, ERATO Doi 474, expressed	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85256342-4	chr12	85256250	85256450	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175337, intron 5 of 11)	MER44B|DNA|TcMar-Tigger	-10365.0	NR_105903	102466769.0		NR_105903	ENSMUSG00000098263	Mir6938	Gm27519|mmu-mir-6938	microRNA 6938	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-84104330-2	chr17	84104280	84104480	+	701.416626	f1_balb.idr|f1_c57bl6.idr	Intergenic	L4_B_Mam|LINE|RTE-X	25720.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5429267-2	chr19	5429167	5429367	+	998.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4123.0	NM_001256515	107242.0	Mm.329658	NM_134149	ENSMUSG00000047423	AI837181	Bles03|N28173	expressed sequence AI837181	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-74272819-1	chr17	74272719	74272919	+	717.0	f1_balb.idr	intron (NM_133771, intron 1 of 8)	RMER17B2|LTR|ERVK	22044.0	NM_133771	76890.0	Mm.311874	NM_133771	ENSMUSG00000058704	Memo1	0610016J10Rik|D930048L02Rik	mediator of cell motility 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-46563962-4	chr4	46563842	46564042	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164804, intron 1 of 11)	intron (NM_001164804, intron 1 of 11)	2498.0	NM_178893	107684.0	Mm.416311	NM_178893	ENSMUSG00000028337	Coro2a	9030208C03Rik|AI563590|IR10	coronin, actin binding protein 2A	protein-coding	2.20427520267916	2.85617657676426	3.84845346246338	3.6189709142531	3.32728737421761	2.71867269047605	4.37008971537783	3.63717681575111	0.558955851041604	0.393663712503764	0.882309644749821
Merged-chr16-24569870-4	chr16	24569767	24569967	+	833.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 4 of 12)	intron (NM_178665, intron 4 of 12)	40553.0	NR_038091	624582.0	Mm.439775	NR_038091		Morf4l1-ps1	A730098P11Rik	mortality factor 4 like 1, pseudogene 1	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-10472451-4	chr10	10472336	10472536	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001127353)	promoter-TSS (NM_001127353)	-122.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-67528382-7	chr7	67528326	67528526	+	956.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028144, intron 8 of 8)	intron (NR_028144, intron 8 of 8)	116810.0	NM_175124	67867.0	Mm.31247	NM_027413	ENSMUSG00000030556	Lrrc28	1300004K21Rik|2210012C09Rik|2310058O11Rik	leucine rich repeat containing 28	protein-coding	2.6591238063965	3.37205387159727	3.33990763515821	2.26484315250439	2.78162350161769	3.00826816462437	3.50741621719781	2.81883593038343	0.13076357455386	0.845995064282327	0.998431161219273
Merged-chr4-18098314-2	chr4	18098197	18098397	+	547.5	f0_balb.idr|f1_balb.idr	intron (NM_019724, intron 7 of 9)	intron (NM_019724, intron 7 of 9)	244839.0	NM_019724	17389.0	Mm.187315	NM_019724	ENSMUSG00000028226	Mmp16	MT-MMP 3|MT3-MMP|Mt3mmp	matrix metallopeptidase 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-60962423-1	chr2	60962323	60962523	+	665.0	f0_c57.idr	intron (NM_020296, intron 1 of 13)	CpG	781.0	NM_020296	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106173382-2	chr11	106173282	106173482	+	803.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252449, intron 3 of 10)	intron (NM_001252449, intron 3 of 10)	-12653.0	NM_001356458	67803.0	Mm.21687	NM_172397	ENSMUSG00000040699	Limd2	0610025L06Rik|AI413966	LIM domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-58552847-4	chr9	58552765	58552965	+	886.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11925.0	NM_133983	102657.0	Mm.5356	NM_133983	ENSMUSG00000035914	Cd276	6030411F23Rik|AU016588|B7RP-2|B7h3	CD276 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-125435683-7	chr1	125435589	125435789	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001205385)	promoter-TSS (NM_001205385)	38.0	NM_001205386	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-136173772-4	chr5	136173707	136173907	+	972.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-3151.0	NM_178751	269717.0	Mm.308396	NM_178751	ENSMUSG00000039747	Orai2	A730041O15Rik|Tmem142b	ORAI calcium release-activated calcium modulator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-79451719-2	chr16	79451619	79451819	+	589.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-360622.0	NM_178855	19146.0	Mm.5184	NM_008941	ENSMUSG00000022857	Tmprss15	Entk|Prss7	transmembrane protease, serine 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-22727337-4	chr2	22727236	22727436	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-46991.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-79686606-2	chr15	79686506	79686706	+	821.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028792, intron 1 of 3)	intron (NM_028792, intron 1 of 3)	1266.0	NM_028792	74158.0	Mm.323393	NM_028792	ENSMUSG00000022426	Josd1	1300006C06Rik|mKIAA0063	Josephin domain containing 1	protein-coding	1.14924286962777	1.94002116075848	0.840205572667076	1.35988100026913	1.15867999958355	1.9569941477241	0.843933125994904	1.36755944705247	0.0372513047183536	0.977356215290093	0.998431161219273
Merged-chr11-119603103-6	chr11	119603045	119603245	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001306081, exon 1 of 33)	5' UTR (NM_001306081, exon 1 of 33)	240.0	NM_028898	74370.0	Mm.209933	NM_028898	ENSMUSG00000025583	Rptor	4932417H02Rik|Rap|Raptor|mKIAA1303	regulatory associated protein of MTOR, complex 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-121605186-2	chr5	121605099	121605299	+	713.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178799, intron 7 of 10)	intron (NM_178799, intron 7 of 10)	-11375.0	NM_001308450	11669.0	Mm.284446	NM_009656	ENSMUSG00000029455	Aldh2	AHD-M1|ALDH-E2|ALDHI|Ahd-5|Ahd5	aldehyde dehydrogenase 2, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-61072608-2	chr18	61072508	61072708	+	716.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008809, intron 11 of 22)	intron (NM_008809, intron 11 of 22)	27458.0	NM_008809	18596.0	Mm.4146	NM_008809	ENSMUSG00000024620	Pdgfrb	AI528809|CD140b|PDGFR-1|Pdgfr	platelet derived growth factor receptor, beta polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120584948-2	chr8	120584848	120585048	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178856, intron 3 of 4)	intron (NM_178856, intron 3 of 4)	4127.0	NM_178856	272551.0	Mm.275910	NM_178856	ENSMUSG00000031821	Gins2	2210013I18Rik|4833427B12Rik|AI323585|Pfs2	GINS complex subunit 2 (Psf2 homolog)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115636860-2	chr11	115636760	115636960	+	762.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8565.0	NM_001252395	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-87638285-4	chr16	87638204	87638404	+	999.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	BGLII_Mur|LTR|ERVK	-60650.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	3.40003669633974	2.07712948306281	2.91478954988615	4.14626548893401	3.73542936094008	4.21889896199194	2.64065821263545	4.16582774416404	0.68592478609202	0.295588501164277	0.7986401962885
Merged-chr10-26772415-4	chr10	26772337	26772537	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_176837)	promoter-TSS (NM_176837)	-75.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-90458862-2	chr16	90458762	90458962	+	633.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_015755, intron 4 of 10)	intron (NM_015755, intron 4 of 10)	72465.0	NM_015755	26559.0	Mm.125874	NM_015755	ENSMUSG00000053414	Hunk	Bstk1|Mak-v	hormonally upregulated Neu-associated kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-57519717-2	chr9	57519617	57519817	+	642.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	-1515.0	NM_007747	12858.0	Mm.273403	NM_007747	ENSMUSG00000000088	Cox5a	AA959768|CcOX	cytochrome c oxidase subunit Va	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-45474407-4	chr5	45474306	45474506	+	811.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18968.0	NM_024434	66988.0	Mm.286830	NM_024434	ENSMUSG00000039682	Lap3	2410015L10Rik|AA410100|LAP-3|Lap|Lapep|Pep-7|Pep-S|Pep7|Peps	leucine aminopeptidase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-43676011-4	chr19	43675888	43676088	+	993.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045645, exon 1 of 1)	non-coding (NR_045645, exon 1 of 1)	810.0	NR_045645	100502982.0	Mm.313570	NR_045645		BC037704	-	cDNA sequence BC037704	ncRNA	-1.07142959718456	-1.18850429617302	-1.1989910054659	-1.20760510071201	-1.06773399208602	-0.856224159103991	-1.19661704434411	-1.20606318178146	1.43171530115239	0.641787244669509	1
Merged-chr13-45572961-2	chr13	45572861	45573061	+	931.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199304, intron 5 of 6)	intron (NM_001199304, intron 5 of 6)	65517.0	NM_025508	66355.0	Mm.290802	NM_025508	ENSMUSG00000000253	Gmpr	2310004P21Rik|AV028449|GMPR 1	guanosine monophosphate reductase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-72215628-2	chr11	72215524	72215724	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_026068)	promoter-TSS (NM_026068)	-32.0	NM_026068	67279.0	Mm.159496	NM_026068	ENSMUSG00000020801	Med31	3110004H13Rik|CGI-125|l11Jus15	mediator complex subunit 31	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116429810-2	chr11	116429710	116429910	+	763.6875	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4284.0	NM_176902	319370.0	Mm.258466	NM_176902	ENSMUSG00000050628	Ubald2	1110014K08Rik|D030012E24Rik|Fam100b	UBA-like domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71282537-2	chr17	71282536	71282736	+	621.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357337, intron 2 of 7)	intron (NM_001357337, intron 2 of 7)	28375.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	1.94888108016555	1.49196712609133	0.879552964667675	1.52274016598784	1.89779095736341	1.50402486276557	0.883297097561381	0.868627602235909	-0.469057812015612	0.73271044358557	0.998431161219273
Merged-chr11-54865901-2	chr11	54865801	54866001	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008248)	promoter-TSS (NM_008248)	-482.0	NM_008248	15254.0	Mm.425	NM_008248	ENSMUSG00000020267	Hint1	AA673479|Hint|Ipk1|PKCI-1|PRKCNH1	histidine triad nucleotide binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-73557511-2	chr7	73557411	73557611	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_037569, intron 1 of 4)	intron (NR_037569, intron 1 of 4)	884.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-38913103-4	chr6	38913005	38913205	+	983.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5881.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-89888322-2	chr18	89888207	89888407	+	577.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus1|LINE|L1	-119171.0	NM_001039173	623279.0	Mm.447164	NM_001039173	ENSMUSG00000073514	Dok6	Dok-6	docking protein 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52828026-2	chr13	52827926	52828126	+	955.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-70821.0	NR_027893	105404.0	Mm.184173	NR_027893		BB123696	-	expressed sequence BB123696	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-121907756-4	chr8	121907660	121907860	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033485)	promoter-TSS (NM_001033485)	-73.0	NM_001033485	407789.0	Mm.436576	NM_001033485		BC048644	-	cDNA sequence BC048644	protein-coding	6.78851661581216	6.23852511095509	6.0063639431799	6.39243282231363	7.02341372081958	6.85340766107049	6.29764246523706	6.60819852910918	0.354306477981485	0.121987827863382	0.547245267450283
Merged-chr2-60370529-2	chr2	60370429	60370629	+	584.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_013825, intron 2 of 34)	intron (NM_013825, intron 2 of 34)	12702.0	NM_013825	17076.0	Mm.2074	NM_013825	ENSMUSG00000026980	Ly75	CD205|DEC-205|DEC205	lymphocyte antigen 75	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-25563876-2	chr2	25563776	25563976	+	699.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081199, intron 27 of 28)	intron (NM_001081199, intron 27 of 28)	5976.0	NM_021519	59022.0	Mm.29945	NM_021519	ENSMUSG00000015092	Edf1	0610008L11Rik|AA409425	endothelial differentiation-related factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-117493179-2	chr5	117493079	117493279	+	723.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001312914, intron 1 of 19)	intron (NM_001312914, intron 1 of 19)	79177.0	NM_001312914	333050.0	Mm.437947	NM_001034873	ENSMUSG00000061578	Ksr2	-	kinase suppressor of ras 2	protein-coding	0.943342353802671	1.67564515257254	0.995428541125864	2.50456991499224	1.34150586833921	1.8446760718678	1.45611008890691	2.23324794721941	0.126491681306544	0.917131853415905	0.998431161219273
Merged-chr1-172046532-2	chr1	172046432	172046632	+	801.0	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	11064.0	NM_010916	18071.0	Mm.2474	NM_010916	ENSMUSG00000051251	Nhlh1	Hen1|Nscl|Tal2|bHLHa35	nescient helix loop helix 1	protein-coding	3.36857151901149	3.51441729203951	2.88601110367735	3.56201740318472	3.31415700818068	5.15842942003746	4.24479923266083	4.82112118239781	1.61775633685296	0.00212139079805631	0.0349306389206876
Merged-chr19-21785272-4	chr19	21785172	21785372	+	929.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031997, intron 2 of 24)	intron (NM_031997, intron 2 of 24)	6932.0	NM_031997	83921.0	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-97523967-4	chr13	97523841	97524041	+	716.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36059.0	NR_046157	328314.0	Mm.138047	NR_046157	ENSMUSG00000110235	Gm5086	B230311A21|EG328314	predicted gene 5086	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-149103343-1	chr4	149103243	149103443	+	717.0	f1_balb.idr	promoter-TSS (NM_010044)	promoter-TSS (NM_010044)	-799.0	NR_104263	13347.0	Mm.41433	NM_010044	ENSMUSG00000028974	Dffa	A330085O09Rik|DFF35|Dff45|ICAD|ICAD-L|ICAD-S	DNA fragmentation factor, alpha subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120594781-2	chr8	120594681	120594881	+	659.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-5706.0	NM_178856	272551.0	Mm.275910	NM_178856	ENSMUSG00000031821	Gins2	2210013I18Rik|4833427B12Rik|AI323585|Pfs2	GINS complex subunit 2 (Psf2 homolog)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-120404147-4	chr2	120404020	120404220	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001110496)	promoter-TSS (NM_001110496)	-4.0	NM_001110496	211499.0	Mm.260712	NM_173734	ENSMUSG00000033808	Tmem87a	A930025J12Rik	transmembrane protein 87A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-144899333-2	chr4	144899233	144899433	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357274, intron 2 of 6)	intron (NM_001357274, intron 2 of 6)	6196.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90964956-3	chr2	90964859	90965059	+	690.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001244891, intron 2 of 14)	intron (NM_001244891, intron 2 of 14)	24562.0	NM_017368	13046.0	Mm.29495	NM_017368	ENSMUSG00000005506	Celf1	1600010O03Rik|AA407467|Brunol2|CUG-BP|CUG-BP1|CUGBP|Cugbp1|D2Wsu101e|HNAB50|NAB50	CUGBP, Elav-like family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-15778048-2	chr17	15777867	15778067	+	740.075012	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA6|LINE|L1	48619.0	NM_178615	68799.0	Mm.293466	NM_178615	ENSMUSG00000048027	Rgmb	1110059F19Rik|DRAGON	repulsive guidance molecule family member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-45407628-1	chr9	45407528	45407728	+	1000.0	f1_balb.idr	intron (NM_007503, intron 1 of 5)	intron (NM_007503, intron 1 of 5)	1551.0	NM_007503	11936.0	Mm.22742	NM_007503	ENSMUSG00000059412	Fxyd2	Atp1g1	FXYD domain-containing ion transport regulator 2	protein-coding	0.510047942995523	0.237276181670936	1.22878764534098	0.223012120688747	0.842440102319364	0.456105500077362	0.231028692327271	0.22410564167173	-0.885262349325666	0.643296756820205	1
Merged-chr17-47039040-4	chr17	47038933	47039133	+	712.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28501.0	NM_001177374	224826.0	Mm.28234	NM_146078	ENSMUSG00000023977	Ubr2	9930021A08Rik|AI462103|AW540746|E130209G04Rik|mKIAA0349	ubiquitin protein ligase E3 component n-recognin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-86162174-1	chr15	86162074	86162274	+	630.0	f1_c57bl6.idr	intron (NM_145475, intron 3 of 12)	B2_Mm2|SINE|B2	-23554.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	-0.181092104867839	-0.518961010657187	-0.0975975816807718	-0.52462757540625	-0.276381331923885	-0.51823564029449	-0.521461676874043	-0.524198578964346	-1.5683136731713	0.557688994997577	1
Merged-chr18-4797956-4	chr18	4797853	4798053	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14533.0	NR_045881	100038439.0	Mm.387569	NR_045881	ENSMUSG00000097043	Gm10556	-	predicted gene 10556	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-11402865-2	chr2	11402765	11402965	+	614.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4365.0	NR_040615	77543.0	Mm.490670	NR_040615	ENSMUSG00000102674	8030442B05Rik	-	RIKEN cDNA 8030442B05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-77581656-4	chr10	77581563	77581763	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145925)	promoter-TSS (NM_145925)	8.0	NM_145925	108705.0	Mm.28853	NM_145925	ENSMUSG00000009291	Pttg1ip	1810010L20Rik|AI314311|AU018448|C79540|PBF	pituitary tumor-transforming 1 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-136425470-2	chr3	136425370	136425570	+	549.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	23879.0	NR_040592	70055.0	Mm.261063	NR_040592	ENSMUSG00000099508	1700030L20Rik	-	RIKEN cDNA 1700030L20 gene	ncRNA	-2.05752322593321	-2.15521190974092	-2.16307242109104	-2.16952927915413	-2.17938029103484	-2.15350850414045	-2.16129297361887	-2.16837350464794	-0.683654500252594	0.846597994014493	1
Merged-chr16-20227728-4	chr16	20227635	20227835	+	864.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001145930, exon 28 of 31)	exon (NM_001145930, exon 28 of 31)	13623.0	NM_198599	208158.0	Mm.326383	NM_198599	ENSMUSG00000041205	Map6d1	A330066I15Rik	MAP6 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-27596927-4	chr15	27596837	27597037	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25443.0	NR_106065	102466808.0		NR_106065	ENSMUSG00000098416	Mir7117	Gm27729|mmu-mir-7117	microRNA 7117	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80148926-4	chr10	80148831	80149031	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001305799)	promoter-TSS (NM_001305799)	659.0	NM_001347117	59090.0	Mm.143813	NM_021565	ENSMUSG00000035621	Midn	3000003C15Rik	midnolin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-36233818-2	chr17	36233718	36233918	+	648.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR10D|LTR|ERVK	24028.0	NM_026308	67676.0	Mm.27131	NM_026308	ENSMUSG00000024446	Rpp21	0610037N01Rik	ribonuclease P 21 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-51481258-4	chr3	51481141	51481341	+	880.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2725.0	NM_016858	19338.0	Mm.1664	NM_016858	ENSMUSG00000027739	Rab33b	-	RAB33B, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-68129239-4	chr7	68129147	68129347	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010513, intron 2 of 20)	intron (NM_010513, intron 2 of 20)	134986.0	NM_030101	78444.0	Mm.425468	NM_030101	ENSMUSG00000030553	Pgpep1l	C330024D12Rik	pyroglutamyl-peptidase I-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101649061-4	chr7	101648955	101649155	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14713.0	NM_009191	20480.0	Mm.3990	NM_009191	ENSMUSG00000001829	Clpb	AL118244|Skd3	ClpB caseinolytic peptidase B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-6965077-1	chr3	6964977	6965177	+	598.0	f1_balb.idr	Intergenic	Lx3_Mus|LINE|L1	-344634.0	NM_027048	69347.0	Mm.45822	NM_027048	ENSMUSG00000069118	1700008P02Rik	-	RIKEN cDNA 1700008P02 gene	protein-coding	-0.387424802247219	0.225093859036634	-0.379366054029851	-0.0859443517545632	-0.386678495882768	-0.374533681460938	-0.378497430311819	-0.081557658621459	-1.68638265740021	0.50796622284999	1
Merged-chr4-101157405-2	chr4	101157305	101157505	+	624.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146145, intron 20 of 24)	intron (NM_146145, intron 20 of 24)	88367.0	NM_183024	242570.0	Mm.185636	NM_183024	ENSMUSG00000035275	Raver2	A430091O22Rik	ribonucleoprotein, PTB-binding 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-91421768-3	chr13	91421695	91421895	+	628.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33710.0	NR_045161	320297.0	Mm.375866	NR_045161	ENSMUSG00000097182	A830009L08Rik	-	RIKEN cDNA A830009L08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-120172798-2	chr6	120172698	120172898	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016718, intron 1 of 3)	L1MD3|LINE|L1	-21025.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-98695037-2	chr13	98694937	98695137	+	656.214294	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001025606)	promoter-TSS (NM_001025606)	-206.0	NM_001025606	380863.0	Mm.28264	NM_001025606	ENSMUSG00000052485	Tmem171	Gm905	transmembrane protein 171	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-9454909-4	chr13	9454787	9454987	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081426, intron 1 of 36)	intron (NM_001081426, intron 1 of 36)	178362.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-87468522-2	chr1	87468422	87468622	+	556.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-1679.0	NM_028473	73234.0	Mm.7310	NM_028473	ENSMUSG00000026258	3110079O15Rik	Snorc	RIKEN cDNA 3110079O15 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85399304-2	chr12	85399204	85399404	+	585.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24587.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-77438418-2	chr3	77438318	77438518	+	563.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	1362835.0	NM_001253719	213262.0	Mm.379337	NM_178673	ENSMUSG00000034098	Fstl5	9130207J01Rik	follistatin-like 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-148489114-4	chr2	148489020	148489220	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-45585.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-63449158-2	chr14	63449058	63449258	+	669.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177628, intron 2 of 3)	intron (NM_177628, intron 2 of 3)	12764.0	NM_177628	219148.0	Mm.37882	NM_177628	ENSMUSG00000035095	Fam167a	A030013D21	family with sequence similarity 167, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-29246799-3	chr17	29246693	29246893	+	822.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9003.0	NM_001360239	240058.0	Mm.39905	NM_153166	ENSMUSG00000024008	Cpne5	A830083G22Rik	copine V	protein-coding	1.77017847066228	2.123038691935	2.29381656267304	1.99700290389519	2.22869300505317	2.3915144231416	1.31456555080617	2.5169903424122	0.350557836129713	0.7121421781733	0.998431161219273
Merged-chr1-178369058-4	chr1	178368970	178369170	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-31255.0	NR_149827	51810.0	Mm.86589	NM_016805	ENSMUSG00000039630	Hnrnpu	AA408410|AI256620|AL024194|AL024437|AW557595|C86794|Hnrpu|SAFA|Sp120|hnRNP U	heterogeneous nuclear ribonucleoprotein U	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-113351812-4	chr6	113351700	113351900	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7878.0	NM_133926	52163.0	Mm.277373	NM_133926	ENSMUSG00000030272	Camk1	AI505105|CaMKIalpha|D6Ertd263e	calcium/calmodulin-dependent protein kinase I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-106431539-2	chr8	106431439	106431639	+	797.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16200.0	NM_011764	22751.0	Mm.295582	NM_011764	ENSMUSG00000031907	Zfp90	6430515L01Rik|KRAB17|NK10|Zfp64|Zfp83|mKIAA1954	zinc finger protein 90	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-45570098-2	chr17	45569998	45570198	+	631.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008302, intron 6 of 10)	intron (NM_008302, intron 6 of 10)	3163.0	NM_008302	15516.0	Mm.2180	NM_008302	ENSMUSG00000023944	Hsp90ab1	90kDa|AL022974|C81438|Hsp84|Hsp84-1|Hsp90|Hspcb	heat shock protein 90 alpha (cytosolic), class B member 1	protein-coding	-0.523596773874937	-0.51334229423208	-0.516718032720414	-0.363577805320431	-0.0663533466456171	-0.512579198133826	-0.0747035649964827	-0.518859332323257	2.45311371678479	0.34970679546246	1
Merged-chr6-116193543-4	chr6	116193456	116193656	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177412)	promoter-TSS (NM_177412)	-182.0	NM_177412	330401.0	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-126483489-3	chr2	126483398	126483598	+	944.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359975, intron 2 of 27)	intron (NM_001359975, intron 2 of 27)	8055.0	NM_001080944	241633.0	Mm.222235	NM_001080944	ENSMUSG00000060131	Atp8b4	Im	ATPase, class I, type 8B, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-98120020-2	chr7	98119920	98120120	+	725.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001256081)	promoter-TSS (NM_001256081)	-527.0	NM_008663	17921.0	Mm.1403	NM_008663	ENSMUSG00000030761	Myo7a	Hdb|Myo7|USH1B|nmf371|polka|sh-1|sh1	myosin VIIA	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115210209-2	chr11	115210109	115210309	+	559.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033393, intron 8 of 9)	intron (NM_001033393, intron 8 of 9)	22722.0	NM_001033393	320534.0	Mm.260587	NM_001033393	ENSMUSG00000045980	Tmem104	C630005D06Rik|mFLJ00021	transmembrane protein 104	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-87597638-1	chr6	87597538	87597738	+	804.333313	f0_balb.idr	Intergenic	Intergenic	-6895.0	NM_021381	58182.0	Mm.333226	NM_021381	ENSMUSG00000049409	Prokr1	EG-VEGFR1|Gpr73|Pk-r1|Pkr1	prokineticin receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-56430342-3	chr8	56430253	56430453	+	597.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	54615.0	NR_131020	75123.0	Mm.72666	NR_131020	ENSMUSG00000110310	4930518J21Rik	-	RIKEN cDNA 4930518J21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-44929820-2	chr19	44929719	44929919	+	702.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1300.0	NM_172638	226151.0	Mm.212609	NM_172638	ENSMUSG00000036097	Slf2	3632432H19|Fam178a	SMC5-SMC6 complex localization factor 2	protein-coding	0.885587114075645	-0.0691839129373916	-0.0754638010139449	0.100293479397816	-0.0872700798417213	0.473112908702409	-0.0740751565133143	-0.0794844169681931	-1.34757551820684	0.549851750107635	1
Merged-chr6-119476815-2	chr6	119476715	119476915	+	623.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009525, intron 1 of 4)	YREP_Mm|Unknown|Unknown	-2853.0	NM_133940	101358.0	Mm.125477	NM_133940	ENSMUSG00000030019	Fbxl14	AW322056|Fbx14l	F-box and leucine-rich repeat protein 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-128435922-3	chr8	128435824	128436024	+	904.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358959, intron 6 of 16)	intron (NM_001358959, intron 6 of 16)	76683.0	NR_035436	100316680.0		NR_035436	ENSMUSG00000084523	Mir1903	Mirn1903|mmu-mir-1903	microRNA 1903	ncRNA	1.31645220649107	2.18230058959652	0.979185325132082	1.38905396599114	1.73146736070441	2.5537496581221	0.984536040933614	1.70419581826581	0.875633835856568	0.464609362088691	0.922521920152562
Merged-chr9-109021606-4	chr9	109021503	109021703	+	786.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153430, intron 9 of 13)	intron (NR_153430, intron 9 of 13)	-16964.0	NM_001284332	66940.0	Mm.196533	NM_025858	ENSMUSG00000025647	Shisa5	2310008D10Rik|6430628I05Rik|Scotin|mShisa5	shisa family member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116110304-4	chr11	116110194	116110394	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172570)	promoter-TSS (NM_172570)	-59.0	NM_172570	217333.0	Mm.347770	NM_172570	ENSMUSG00000020773	Trim47	2210023F24Rik	tripartite motif-containing 47	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-101265289-4	chr4	101265188	101265388	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146145)	promoter-TSS (NM_146145)	-6.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135972631-4	chr4	135972532	135972732	+	946.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011942)	promoter-TSS (NM_011942)	-38.0	NM_011942	26394.0	Mm.34302	NM_011942	ENSMUSG00000028670	Lypla2	LysoII	lysophospholipase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-37243603-1	chr12	37243503	37243703	+	628.0	f1_balb.idr	intron (NM_178767, intron 1 of 12)	intron (NM_178767, intron 1 of 12)	1964.0	NM_178767	319660.0	Mm.485540	NM_178767	ENSMUSG00000050103	Agmo	A530016O06Rik|AI790538|Tmem195	alkylglycerol monooxygenase	protein-coding	-1.58994551673671	-1.55912852307891	-1.56844783632235	-1.57610299769523	-1.18549093183599	-1.55710898902261	-1.56633814807757	-1.57473272746952	1.78703309985663	0.610309988231842	1
Merged-chr10-81494812-4	chr10	81494737	81494937	+	866.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134009, intron 1 of 13)	intron (NM_134009, intron 1 of 13)	1526.0	NM_134009	103425.0	Mm.302791	NM_134009	ENSMUSG00000020238	Ncln	3100002P13Rik|AW120537	nicalin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-72917537-4	chr17	72917442	72917642	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029999)	promoter-TSS (NM_029999)	-763.0	NM_029999	77889.0	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36075487-2	chr1	36075387	36075587	+	796.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_015818, intron 1 of 1)	intron (NM_015818, intron 1 of 1)	7087.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83502420-4	chr6	83502344	83502544	+	993.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149734, intron 1 of 6)	intron (NR_149734, intron 1 of 6)	4525.0	NM_013764	27369.0	Mm.42234	NM_013764	ENSMUSG00000014554	Dguok	dGK|dGK1|dGK2|dGK3	deoxyguanosine kinase	protein-coding	4.39768426000976	4.9684395056579	4.6473356992707	4.88552436260574	4.59101529201444	4.56904489771116	4.68053505693256	4.239424594169	-0.259697274655166	0.470866971152717	0.92584289530549
Merged-chr6-146481610-3	chr6	146481510	146481710	+	611.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019923, intron 1 of 56)	intron (NM_019923, intron 1 of 56)	20613.0	NM_010586	16439.0	Mm.7800	NM_010586	ENSMUSG00000030287	Itpr2	AI649341|InsP3R-2|InsP3R-5|Ip3r2|Itpr5|insP3R2	inositol 1,4,5-triphosphate receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70943419-4	chr8	70943312	70943512	+	904.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MurERV4_19-int|LTR|ERVK	12097.0	NM_001357655	665828.0	Mm.482151	NM_001357655	ENSMUSG00000074252	Gm10654	EG665828	predicted gene 10654	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-24163431-4	chr10	24163334	24163534	+	635.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016797, intron 2 of 9)	intron (NM_016797, intron 2 of 9)	14117.0	NM_016797	53331.0	Mm.248042	NM_016797	ENSMUSG00000019998	Stx7	AI315064|AI317144|AW107239|Syn7	syntaxin 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-39304328-3	chr18	39304218	39304418	+	828.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361073, intron 19 of 21)	intron (NM_001361073, intron 19 of 21)	182927.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-94325899-1	chr11	94325799	94325999	+	702.0	f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-2102.0	NM_027799	71452.0	Mm.141054	NM_027799	ENSMUSG00000020864	Ankrd40	1110011C06Rik|5530600A18Rik|Gcap15	ankyrin repeat domain 40	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-87746449-4	chr17	87746366	87746566	+	989.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_199251, exon 2 of 2)	exon (NM_199251, exon 2 of 2)	51528.0	NM_199251	210741.0	Mm.312046	NM_199251	ENSMUSG00000050138	Kcnk12	mntk1	potassium channel, subfamily K, member 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-19955745-3	chr3	19955650	19955850	+	800.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1304.0	NM_001276250	12870.0	Mm.13787	NM_007752	ENSMUSG00000003617	Cp	D3Ertd555e	ceruloplasmin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-18832493-2	chr15	18832393	18832593	+	759.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009865, intron 1 of 11)	intron (NM_009865, intron 1 of 11)	12164.0	NM_009865	320873.0	Mm.117794	NM_009865	ENSMUSG00000022321	Cdh10	A830016G23Rik|C030003B10Rik|C030011H18Rik	cadherin 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-123982463-2	chr8	123982358	123982558	+	785.5	f0_balb.idr|f1_balb.idr	exon (NM_019552, exon 1 of 13)	exon (NM_019552, exon 1 of 13)	664.0	NM_019552	56199.0	Mm.274243	NM_019552	ENSMUSG00000031974	Abcb10	Abc-me|Abcb12	ATP-binding cassette, sub-family B (MDR/TAP), member 10	protein-coding	1.03609892415133	1.7147068893303	1.99848579828105	2.02482632316434	0.826646618857331	2.2894616797094	0.875779329672999	0.856046119819407	-0.945706773180634	0.484032025286384	0.931207887927275
Merged-chr6-37417721-4	chr6	37417612	37417812	+	804.616699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178661, intron 1 of 11)	intron (NM_178661, intron 1 of 11)	24436.0	NM_178661	208647.0	Mm.169929	NM_178661	ENSMUSG00000038648	Creb3l2	BBF2H7|C530025K05Rik|SCIRR69	cAMP responsive element binding protein 3-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32308435-2	chr2	32308335	32308535	+	887.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_125959)	TTS (NR_125959)	-9830.0	NR_128563	104795665.0		NR_128563	ENSMUSG00000092765	Gm23363	Mir3154|mir-3154|mmu-mir-3154	predicted gene, 23363	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-15883262-2	chr19	15883162	15883362	+	863.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41360.0	NM_001205339	107272.0	Mm.289936	NM_177420	ENSMUSG00000024640	Psat1	D8Ertd814e|EPIP|PSA|Psat	phosphoserine aminotransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-22861441-4	chr2	22861353	22861553	+	968.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019456, intron 10 of 13)	intron (NM_019456, intron 10 of 13)	-34069.0	NM_019501	56075.0	Mm.249752	NM_019501	ENSMUSG00000026784	Pdss1	2610203G20Rik|2700031G06Rik|TPT|TPT 1|Tprt|mDLP1|mSPS1	prenyl (solanesyl) diphosphate synthase, subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-128694689-4	chr8	128694601	128694801	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010578, intron 1 of 15)	MTC|LTR|ERVL-MaLR	9047.0	NM_010578	16412.0	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-80668512-2	chr12	80668428	80668628	+	850.25	f0_balb.idr|f0_c57.idr	intron (NM_026244, intron 3 of 6)	intron (NM_026244, intron 3 of 6)	23938.0	NR_037995	68354.0	Mm.46194	NR_037995		Plekhd1os	0610009B14Rik	pleckstrin homology domain containing, family D (with coiled-coil domains) member 1, opposite strand	ncRNA	0.805925711005376	0.308363829745636	0.299885974157886	0.763170917539661	1.34951504192748	0.310263841035169	0.502266129757225	0.294444510388218	0.733930077953521	0.693786711378187	1
Merged-chr16-36720393-4	chr16	36720308	36720508	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285791, intron 5 of 6)	intron (NM_001285791, intron 5 of 6)	26430.0	NM_001285791	106347.0	Mm.17807	NM_134109	ENSMUSG00000022900	Ildr1	AU041483|AU044638	immunoglobulin-like domain containing receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-73593076-4	chr7	73592944	73593144	+	888.0125119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34649.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-93452381-1	chr10	93452281	93452481	+	1000.0	f1_balb.idr	Intergenic	Intergenic	-1015.0	NM_001313897	16993.0	Mm.271071	NM_008517	ENSMUSG00000015889	Lta4h	-	leukotriene A4 hydrolase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-46728036-4	chr13	46727924	46728124	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175749)	promoter-TSS (NM_175749)	-175.0	NM_175749	218210.0	Mm.255398	NM_175749	ENSMUSG00000021374	Nup153	B130015D15Rik|C88147	nucleoporin 153	protein-coding	4.58332903511451	5.31298272077944	5.22419764430806	5.03073289432425	5.08138317521149	5.27632932180008	5.19299971527857	4.61715084805067	0.00463654525870585	0.988691521430343	0.998431161219273
Merged-chr1-78678663-3	chr1	78678553	78678753	+	898.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028817, intron 2 of 15)	ORR1C2|LTR|ERVL-MaLR	20213.0	NM_001136226	195434.0	Mm.276016	NM_001001981	ENSMUSG00000079470	Utp14b	4932411L21Rik|jsd	UTP14B small subunit processome component	protein-coding	0.772041425407992	0.452816230650188	0.438666265618538	0.427478833226068	0.411233254463526	1.09731242857324	1.04327565736227	1.95934020571794	3.46280305914148	0.0457316613860767	0.308598691400533
Merged-chr10-60739812-4	chr10	60739738	60739938	+	892.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023596, intron 2 of 5)	intron (NM_023596, intron 2 of 5)	12944.0	NM_023596	71279.0	Mm.284462	NM_023596	ENSMUSG00000020100	Slc29a3	4933435C21Rik|AW987637|Ent3	solute carrier family 29 (nucleoside transporters), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-172306369-4	chr1	172306261	172306461	+	852.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6006.0	NM_080419	140559.0	Mm.271717	NM_080419	ENSMUSG00000038034	Igsf8	ESTM34|EWI-2|KCT-4|PGRL	immunoglobulin superfamily, member 8	protein-coding	0.133975350894868	0.71930689969894	0.00421676813759342	0.000173691587087882	0.370578022645331	0.204217325194208	0.00537304993123783	0.164536872082869	-0.491763601843771	0.805720206377366	1
Merged-chr11-60774576-2	chr11	60774476	60774676	+	722.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_009410, intron 1 of 18)	intron (NM_009410, intron 1 of 18)	2789.0	NM_009410	21975.0	Mm.10708	NM_009410	ENSMUSG00000002814	Top3a	-	topoisomerase (DNA) III alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70651346-1	chr8	70651246	70651446	+	586.0	f1_c57bl6.idr	exon (NM_023217, exon 4 of 5)	exon (NM_023217, exon 4 of 5)	8392.0	NM_023217	66522.0	Mm.154906	NM_023217	ENSMUSG00000056204	Pgpep1	2810003H13Rik|Gm19458|PAP-I|PGP|PGP-I|PGPI|Pcp	pyroglutamyl-peptidase I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-51226102-2	chr3	51226002	51226202	+	657.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_009834, intron 1 of 2)	B1_Mur2|SINE|Alu	1655.0	NM_009834	12457.0	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-52072055-4	chr11	52071951	52072151	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166654, intron 13 of 13)	intron (NM_001166654, intron 13 of 13)	-26773.0	NM_019411	19052.0	Mm.260288	NM_019411	ENSMUSG00000020349	Ppp2ca	PP2A|R75353	protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-126708625-2	chr2	126708525	126708725	+	615.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019729, intron 1 of 18)	intron (NM_019729, intron 1 of 18)	1297.0	NM_019729	84092.0	Mm.272629	NM_019729	ENSMUSG00000027363	Usp8	AI574262|AW557536|Ubpy|mKIAA0055	ubiquitin specific peptidase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-14230051-5	chr2	14229895	14230095	+	843.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008625, intron 1 of 29)	intron (NM_008625, intron 1 of 29)	581.0	NM_008625	17533.0	Mm.2019	NM_008625	ENSMUSG00000026712	Mrc1	AW259686|CD206|MR	mannose receptor, C type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-75784051-4	chr10	75783938	75784138	+	914.80835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001358778, exon 5 of 5)	3' UTR (NM_001358778, exon 5 of 5)	-2616.0	NM_001346523	103140.0	Mm.5731	NM_133994	ENSMUSG00000001665	Gstt3	AI118089	glutathione S-transferase, theta 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-25504290-4	chr9	25504205	25504405	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 2 of 7)	intron (NM_026189, intron 2 of 7)	22708.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-94386915-2	chr8	94386841	94387041	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357205, intron 1 of 7)	intron (NM_001357205, intron 1 of 7)	512.0	NM_022331	64209.0	Mm.29151	NM_022331	ENSMUSG00000031770	Herpud1	Herp|Mifl|SUP	homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80185047-2	chr10	80184947	80185147	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007909, intron 1 of 3)	intron (NM_007909, intron 1 of 3)	5565.0	NM_007909	13637.0	Mm.1478	NM_007909	ENSMUSG00000003070	Efna2	CEK7L|Elf1|Epl6|Eplg6|Lerk6	ephrin A2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141008544-2	chr7	141008444	141008644	+	711.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	2200.0	NM_025378	66141.0	Mm.141021	NM_025378	ENSMUSG00000025492	Ifitm3	1110004C05Rik|Cd225|Cdw217|DSPA2b|Fgls|IP15|mil-1	interferon induced transmembrane protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-13667260-2	chr16	13667160	13667360	+	688.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358453, intron 2 of 22)	intron (NM_001358453, intron 2 of 22)	910.0	NM_001358452	74108.0	Mm.182350	NM_028761	ENSMUSG00000022685	Parn	1200003I18Rik|DAN	poly(A)-specific ribonuclease (deadenylation nuclease)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-54840258-2	chr1	54840158	54840358	+	551.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081433, intron 1 of 27)	intron (NM_001081433, intron 1 of 27)	86129.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-121464906-2	chr9	121464806	121465006	+	605.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357968, intron 13 of 14)	intron (NM_001357968, intron 13 of 14)	30788.0	NM_001284508	12424.0	Mm.2619	NM_031161	ENSMUSG00000032532	Cck	-	cholecystokinin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-115665216-1	chr6	115665116	115665316	+	542.0	f1_balb.idr	intron (NM_029780, intron 1 of 16)	intron (NM_029780, intron 1 of 16)	10672.0	NM_001356334	110157.0	Mm.184163	NM_029780	ENSMUSG00000000441	Raf1	6430402F14Rik|AA990557|BB129353|Craf1|D830050J10Rik|Raf-1|c-Raf|cRaf|v-Raf	v-raf-leukemia viral oncogene 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-58385042-4	chr13	58384938	58385138	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027335, exon 1 of 4)	exon (NM_027335, exon 1 of 4)	187.0	NM_027335	70153.0	Mm.296610	NM_027335	ENSMUSG00000021550	2210016F16Rik	-	RIKEN cDNA 2210016F16 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19328854-2	chr7	19328754	19328954	+	807.299988	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-16217.0	NM_001127324	13870.0	Mm.280913	NM_007948	ENSMUSG00000003549	Ercc1	Ercc-1	excision repair cross-complementing rodent repair deficiency, complementation group 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-99457833-2	chr10	99457733	99457933	+	804.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-151338.0	NR_038019	100504202.0	Mm.403801	NR_038019	ENSMUSG00000111962	Gm20110	-	predicted gene, 20110	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-13660452-4	chr8	13660333	13660533	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 1 of 23)	intron (NM_009025, intron 1 of 23)	17154.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-78306769-2	chr18	78306669	78306869	+	781.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_207651, intron 3 of 21)	intron (NM_207651, intron 3 of 21)	-100329.0	NM_001110274	27411.0	Mm.44158	NM_030683	ENSMUSG00000024552	Slc14a2	UT-A1|UT-A3	solute carrier family 14 (urea transporter), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-12940507-3	chr18	12940411	12940611	+	779.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207530, intron 1 of 27)	intron (NM_207530, intron 1 of 27)	1330.0	NM_207530	64291.0	Mm.259470	NM_020573	ENSMUSG00000044252	Osbpl1a	G430090F17Rik|Gm753|ORP-1|Osbpl1b	oxysterol binding protein-like 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-31005717-2	chr17	31005603	31005803	+	783.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_177465, intron 20 of 21)	MLT1C|LTR|ERVL-MaLR	51020.0	NM_177465	52020.0	Mm.25923	NM_177465	ENSMUSG00000054134	Umodl1	D17Ertd488e	uromodulin-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6403164-2	chr19	6403064	6403264	+	798.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011242, intron 4 of 16)	intron (NM_011242, intron 4 of 16)	2581.0	NM_011242	19395.0	Mm.77017	NM_011242	ENSMUSG00000032946	Rasgrp2	CDC25L|Caldaggef1	RAS, guanyl releasing protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-7226438-3	chr15	7226334	7226534	+	858.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289496, intron 17 of 22)	intron (NM_001289496, intron 17 of 22)	85892.0	NM_013584	16880.0	Mm.149720	NM_013584	ENSMUSG00000054263	Lifr	A230075M04Rik|AW061234|LIF	leukemia inhibitory factor receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-127789934-4	chr3	127789826	127790026	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145133)	promoter-TSS (NM_145133)	54.0	NM_145133	211550.0	Mm.31852	NM_145133	ENSMUSG00000046688	Tifa	T2bp	TRAF-interacting protein with forkhead-associated domain	protein-coding	4.77437628530363	5.40704011178102	5.92615969560331	4.72940014421525	5.68607806261316	5.00394514466682	6.56475908824554	5.41303505778208	0.567875796371378	0.127472758279992	0.558861688371503
Merged-chr15-36893921-2	chr15	36893821	36894021	+	559.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-96992.0	NM_001253806	22631.0	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-57652593-8	chr8	57652440	57652640	+	989.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040698, intron 1 of 3)	CpG	515.0	NM_001167981	108150.0	Mm.62886	NM_144731	ENSMUSG00000031608	Galnt7	AI225872	polypeptide N-acetylgalactosaminyltransferase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-50479112-5	chr9	50479041	50479241	+	820.366638	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15384.0	NM_029639	76509.0	Mm.29959	NM_029639	ENSMUSG00000032068	Plet1	0610037B23Rik|1600029D21Rik|AA407923|AU043048	placenta expressed transcript 1	protein-coding	0.191211074346938	0.541505322532381	0.115468762277144	-0.0581747184582327	0.399281583305911	-0.048622552317183	-0.0534354032986315	-0.0575315487551664	-1.10312715593924	0.610914748327008	1
Merged-chr11-114927364-4	chr11	114927273	114927473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347651, intron 2 of 3)	intron (NM_001347651, intron 2 of 3)	7013.0	NM_001347651	217304.0	Mm.185355	NM_199221	ENSMUSG00000063193	Cd300lb	CLM-7|Clm7|Gm253|LMIR5	CD300 molecule like family member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30604992-4	chr2	30604925	30605125	+	997.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030137, intron 1 of 1)	intron (NM_030137, intron 1 of 1)	9981.0	NM_030137	78617.0	Mm.40413	NM_030137	ENSMUSG00000047363	Cstad	9530039B02Rik	CSA-conditional, T cell activation-dependent protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-21374803-2	chr5	21374703	21374903	+	642.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008013, intron 1 of 1)	MIRb|SINE|MIR	2130.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-21735794-4	chr5	21735692	21735892	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-1368.0	NM_028431	73078.0	Mm.301655	NM_028431	ENSMUSG00000029017	Pmpcb	3110004O18Rik|MPP11|MPPB|MPPP52	peptidase (mitochondrial processing) beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-40802881-2	chr1	40802781	40802981	+	609.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2720.0	NM_001081198	381339.0	Mm.334678	NM_001081198	ENSMUSG00000079588	Tmem182	2310079P10Rik|AI414494	transmembrane protein 182	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129199895-2	chr2	129199795	129199995	+	999.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001159593, exon 2 of 6)	exon (NM_001159593, exon 2 of 6)	1122.0	NM_001159593	20515.0	Mm.272675	NM_015747	ENSMUSG00000027397	Slc20a1	AI607883|Glvr-1|Glvr1	solute carrier family 20, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-42952579-2	chr4	42952479	42952679	+	656.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355439, intron 2 of 4)	intron (NM_001355439, intron 2 of 4)	2183.0	NM_001355440	56323.0	Mm.20437	NM_019874	ENSMUSG00000036052	Dnajb5	1110058L06Rik|AI462558|Hsc40|Hsp40-3	DnaJ heat shock protein family (Hsp40) member B5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-103965281-2	chr2	103965181	103965381	+	603.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001142337, intron 1 of 3)	intron (NM_001142337, intron 1 of 3)	-4276.0	NM_001142336	16909.0	Mm.29266	NM_008505	ENSMUSG00000032698	Lmo2	Rbtn-2|Rbtn2|Rhom-2|Ttg2	LIM domain only 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46349041-4	chr19	46348959	46349159	+	973.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040418)	promoter-TSS (NR_040418)	-71.0	NR_040418	75579.0	Mm.436708	NR_040418		2310034G01Rik	-	RIKEN cDNA 2310034G01 gene	ncRNA	-0.793650056394788	-0.783705931693247	-0.21027321078573	-0.789480025915912	-0.793030001426252	-0.415380182365828	-0.786247284288473	-0.789040960978802	-0.90798300836589	0.762730093520851	1
Merged-chr5-69559070-2	chr5	69558970	69559170	+	590.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310631, intron 4 of 14)	intron (NM_001310631, intron 4 of 14)	2146.0	NM_001310631	231279.0	Mm.21105	NM_172711	ENSMUSG00000029208	Guf1	4631409J12|AA407526|EF-4	GUF1 homolog, GTPase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-100081327-4	chr15	100081223	100081423	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_037311, intron 3 of 3)	intron (NR_037311, intron 3 of 3)	42659.0	NM_001159361	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-145249164-2	chr7	145249052	145249252	+	577.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_132644, intron 24 of 24)	intron (NR_132644, intron 24 of 24)	34859.0	NR_132644	233979.0	Mm.102235	NM_146206	ENSMUSG00000048677	Tpcn2	D830047E22Rik|Gm35086	two pore segment channel 2	protein-coding	-0.766098858631549	-0.671242401325267	-1.0149493652839	-1.0179632996	-0.880686909715294	-1.0013333639235	-1.01241599330598	-1.01763485038982	-1.68656770867149	0.569182430965611	1
Merged-chr14-65890881-3	chr14	65890749	65890949	+	992.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53547.0	NM_145944	67179.0	Mm.214576	NM_145944	ENSMUSG00000022035	Ccdc25	2610528H13Rik|NSrp70	coiled-coil domain containing 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-138026487-4	chr3	138026375	138026575	+	946.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40913.0	NR_037975	329763.0	Mm.169710	NM_177860	ENSMUSG00000049349	Gm5105	D830013H12|EG329763	predicted gene 5105	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-16198317-2	chr3	16198217	16198417	+	869.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358042, intron 2 of 3)	RMER17A2|LTR|ERVK	15152.0	NM_172677	229096.0	Mm.23834	NM_172677	ENSMUSG00000047213	Ythdf3	9130022A11Rik	YTH domain family 3	protein-coding	-1.3681463318974	-1.33624156493372	-1.34650167276047	-0.80669348975676	-1.36769697821496	-1.33401815676661	-1.34417900924365	-1.3534210303531	-2.3580830592467	0.49586638340111	1
Merged-chr2-27445181-2	chr2	27445081	27445281	+	800.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001113574)	TTS (NM_001113574)	2745.0	NM_001360792	100504116.0	Mm.36529	NM_001360790		Brd3os	A230069D13|D2Bwg1423e|Gm20071	bromodomain containing 3, opposite strand	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129385854-3	chr4	129385755	129385955	+	856.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151530, intron 1 of 2)	MTD|LTR|ERVL-MaLR	3136.0	NR_151530	320896.0	Mm.404042	NR_151530		C330020E22Rik	-	RIKEN cDNA C330020E22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34619220-4	chr17	34619128	34619328	+	818.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302395, intron 7 of 8)	intron (NM_001302395, intron 7 of 8)	-3257.0	NM_152922	81701.0	Mm.231343	NM_152922	ENSMUSG00000015467	Egfl8	Ng3	EGF-like domain 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-86503575-4	chr1	86503437	86503637	+	908.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23020.0	NR_153834	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-53535033-2	chr11	53534933	53535133	+	659.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001252332, exon 4 of 10)	exon (NM_001252332, exon 4 of 10)	14845.0	NM_001361969	20362.0	Mm.274399	NM_033144	ENSMUSG00000018398	Sept8	AW046166|Sepl	septin 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-95524458-3	chr13	95524391	95524591	+	712.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007974, intron 1 of 1)	CpG	749.0	NM_007974	14063.0	Mm.1614	NM_007974	ENSMUSG00000021678	F2rl1	Gpcr11|PAR-2|Par2	coagulation factor II (thrombin) receptor-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-22477441-3	chr8	22477278	22477478	+	942.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001012667)	promoter-TSS (NM_001012667)	-499.0	NM_001146117	102032.0	Mm.378231	NM_001012667	ENSMUSG00000031534	Smim19	AI316807|BG694986|EST-c39	small integral membrane protein 19	protein-coding	1.71834152059019	0.579560946724873	1.10169407756055	0.55805766285506	1.3973941207367	0.814215411889381	0.570182935347093	0.760035940391823	-0.670300675367536	0.673967309392288	0.99440487726309
Merged-chr15-59809166-1	chr15	59809066	59809266	+	966.0	f0_c57.idr	Intergenic	Intergenic	-14207.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	3.97990760322159	4.63553760531077	3.91788928799808	3.19241960767537	4.01075434640464	2.77066241103478	2.48764105746341	2.99139124772107	-1.16776311989804	0.0534207762757584	0.33847839990981
Merged-chr11-97993964-2	chr11	97993864	97994064	+	997.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_207231, intron 3 of 5)	intron (NM_207231, intron 3 of 5)	2209.0	NM_207231	217151.0	Mm.277896	NM_207231	ENSMUSG00000038352	Arl5c	Arl12|BC065791	ADP-ribosylation factor-like 5C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-142905981-4	chr5	142905896	142906096	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007393, intron 1 of 5)	CpG	758.0	NM_007393	11461.0	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-107094749-4	chr13	107094663	107094863	+	893.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	72193.0	NR_015471	100040322.0	Mm.133867	NR_015471	ENSMUSG00000071181	3830408C21Rik	-	RIKEN cDNA 3830408C21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-44292463-4	chr12	44292367	44292567	+	777.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026164, intron 5 of 9)	intron (NM_026164, intron 5 of 9)	23313.0	NM_026164	67452.0	Mm.54126	NM_026164	ENSMUSG00000036257	Pnpla8	1200006O19Rik|AI467579|Ipla2(gamma)	patatin-like phospholipase domain containing 8	protein-coding	1.16751690804576	1.11808763968806	1.08735850191718	1.48621898958642	1.17625041830675	1.7254066730413	1.8572992473936	1.06742207839897	1.06411911702525	0.381600139302264	0.872879327710422
Merged-chr2-93459821-1	chr2	93459721	93459921	+	1000.0	f1_balb.idr	intron (NR_040532, intron 2 of 4)	intron (NR_040532, intron 2 of 4)	2030.0	NM_001271461	12521.0	Mm.4261	NM_007656	ENSMUSG00000027215	Cd82	AA682076|AL023070|C33|IA4|Kai1|Tspan27	CD82 antigen	protein-coding	1.28554318134815	1.82110316971743	2.67283324183511	2.45081771832436	1.07616336888232	1.9926136997622	1.59721028980841	1.85999244360523	-1.30618499485444	0.223530867436331	0.714791840691861
Merged-chr1-93165571-3	chr1	93165464	93165664	+	826.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB3|LINE|L1	-2859.0	NM_001310428	381284.0	Mm.193346	NM_001310428	ENSMUSG00000084989	Crocc2	E030010N08Rik|Gm976	ciliary rootlet coiled-coil, rootletin family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32536998-4	chr2	32536895	32537095	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153560, intron 1 of 10)	intron (NM_153560, intron 1 of 10)	1636.0	NM_153560	98952.0	Mm.4065	NM_153560	ENSMUSG00000039157	Fam102a	AI426465|C230093N12Rik|Eeig1	family with sequence similarity 102, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-103367948-2	chr9	103367848	103368048	+	760.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2168.0	NM_175565	321022.0	Mm.261025	NM_175565	ENSMUSG00000032803	Cdv3	2510010F10Rik|C230084J24Rik|C79446|TPP36	carnitine deficiency-associated gene expressed in ventricle 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69134458-4	chr11	69134366	69134566	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011786, exon 10 of 15)	exon (NM_011786, exon 10 of 15)	8089.0	NM_011786	23801.0	Mm.41989	NM_011786	ENSMUSG00000020892	Aloxe3	e-LOX-3|eLOX-3	arachidonate lipoxygenase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-24629471-2	chr10	24629371	24629571	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34029.0	NM_010217	14219.0	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80291835-2	chr10	80291725	80291925	+	548.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310726)	promoter-TSS (NM_001310726)	-606.0	NM_009091	20054.0	Mm.643	NM_009091	ENSMUSG00000063457	Rps15	rig	ribosomal protein S15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-15890673-4	chr16	15890581	15890781	+	869.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355731, intron 18 of 18)	intron (NM_001355731, intron 18 of 18)	3395.0	NM_007679	12609.0	Mm.347407	NM_007679	ENSMUSG00000071637	Cebpd	c/EBPdelta	CCAAT/enhancer binding protein (C/EBP), delta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-136635952-4	chr1	136635890	136636090	+	928.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11089.0	NM_001160251	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-38434851-4	chr6	38434764	38434964	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177185, intron 1 of 16)	CpG	939.0	NM_177185	320538.0	Mm.302831	NM_177185	ENSMUSG00000038538	Ubn2	2900060J04Rik|6030408G03Rik|BC060116|D130059P03Rik|mKIAA2030	ubinuclein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-60280517-4	chr10	60280446	60280646	+	765.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011179, intron 1 of 14)	intron (NM_011179, intron 1 of 14)	2918.0	NM_001146121	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69604057-3	chr11	69603987	69604187	+	605.916687	f1_balb.idr|f1_c57bl6.idr	intron (NM_013415, intron 1 of 6)	intron (NM_013415, intron 1 of 6)	1873.0	NM_013415	11932.0	Mm.235204	NM_013415	ENSMUSG00000041329	Atp1b2	Amog|Atpb-2	ATPase, Na+/K+ transporting, beta 2 polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26750127-4	chr17	26750039	26750239	+	931.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029870, intron 4 of 8)	intron (NM_029870, intron 4 of 8)	-30940.0	NM_172149	224630.0	Mm.21795	NM_172149	ENSMUSG00000024191	Bnip1	2010005M06Rik|5930429G21Rik|Sec20	BCL2/adenovirus E1B interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45080104-4	chr7	45080130	45080330	+	897.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11983.0	NM_026555	52377.0	Mm.29997	NM_026555	ENSMUSG00000019539	Rcn3	6030455P07Rik|D530026G20Rik|D7Ertd671e|RLP49	reticulocalbin 3, EF-hand calcium binding domain	protein-coding	1.93352038145819	2.45405468680801	2.36716388182512	2.17725414845803	2.9459491531844	1.32480106994532	2.93511951984936	1.25658681929508	0.308364656330098	0.760408108711524	0.998431161219273
Merged-chr6-85904986-3	chr6	85904912	85905112	+	577.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029331)	promoter-TSS (NM_029331)	-74.0	NM_029331	75541.0	Mm.24454	NM_029331	ENSMUSG00000068299	Nat8f4	1700019G17Rik	N-acetyltransferase 8 (GCN5-related) family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-83943308-2	chr10	83943208	83943408	+	740.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	157389.0	NR_152790	102637349.0	Mm.402869	NR_152790	ENSMUSG00000111049	Gm34184	-	predicted gene, 34184	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-119997228-4	chr1	119997087	119997287	+	698.979187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1977.0	NM_001115074	226356.0	Mm.297290	NM_001115074	ENSMUSG00000036962	Cfap221	Gm101|Pcdp1	cilia and flagella associated protein 221	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-13591133-2	chr8	13591033	13591233	+	633.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 8 of 23)	intron (NM_009025, intron 8 of 23)	-28672.0	NM_001080781	66501.0	Mm.46136	NM_025601	ENSMUSG00000031452	1700029H14Rik	-	RIKEN cDNA 1700029H14 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-105779146-1	chr9	105779046	105779246	+	578.0	f0_balb.idr	intron (NM_172927, intron 6 of 7)	intron (NM_172927, intron 6 of 7)	30502.0	NM_172927	245026.0	Mm.482507	NM_172927	ENSMUSG00000043719	Col6a6	E330019B14|E330026B02Rik	collagen, type VI, alpha 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-23434418-6	chr5	23434302	23434502	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026984)	promoter-TSS (NM_026984)	-27.0	NM_026984	69188.0	Mm.205190	NM_026984	ENSMUSG00000029004	Kmt2e	1810033J14Rik|9530077A04Rik|D230038D11Rik|Mll5|NKp44L	lysine (K)-specific methyltransferase 2E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-6411097-2	chr9	6410997	6411197	+	964.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-144550.0	NM_027942	71829.0	Mm.141452	NM_027942	ENSMUSG00000047619	Ddi1	1700011N24Rik	DNA-damage inducible 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127621802-4	chr10	127621730	127621930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008512)	promoter-TSS (NM_008512)	-682.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-89378569-3	chr13	89378469	89378669	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-162067.0	NM_013500	12950.0	Mm.266790	NM_013500	ENSMUSG00000021613	Hapln1	BB099155|CLP|Crtl1|Crtl1l|LP|LP-1	hyaluronan and proteoglycan link protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-85065062-6	chr16	85065013	85065213	+	760.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198825, intron 5 of 15)	intron (NM_001198825, intron 5 of 15)	92902.0	NR_045889	100038614.0	Mm.441351	NR_045889	ENSMUSG00000115518	Gm10791	-	predicted gene 10791	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-40741930-3	chr19	40741759	40741959	+	829.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009848)	TTS (NM_009848)	82089.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-91440882-4	chr6	91440767	91440967	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045980)	promoter-TSS (NR_045980)	-13.0	NR_045980	75787.0	Mm.30842	NR_045980	ENSMUSG00000097693	4930471M09Rik	4930427C17Rik	RIKEN cDNA 4930471M09 gene	ncRNA	1.93311544603133	1.84511326258089	2.00739139460325	1.45571918080423	1.2433722744283	2.09713259688301	1.319897374584	1.46232876462022	-0.77439025643996	0.473875842904463	0.926289078391617
Merged-chr4-137964401-3	chr4	137964262	137964462	+	707.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_199307, exon 20 of 20)	3' UTR (NM_199307, exon 20 of 20)	-29094.0	NM_001256198	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	2.14182606225085	2.9840738106935	2.31849455447984	1.62454847617311	2.26758323191438	2.41552347462121	2.33635695036032	2.38043541660724	-0.0405505115804718	0.962034844566351	0.998431161219273
Merged-chr7-125597267-3	chr7	125597134	125597334	+	873.900024	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6195.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	2.399318512814	3.20414485162083	3.3142062038138	1.9274761515431	2.42009454582004	2.26917714838071	3.33939891691141	2.12197914600379	-0.361843171449046	0.650233516247114	0.985422869512088
Merged-chr16-11000633-3	chr16	11000527	11000727	+	935.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7506.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-21652214-2	chr19	21652114	21652314	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025423, intron 1 of 3)	intron (NM_025423, intron 1 of 3)	577.0	NM_025423	66206.0	Mm.272430	NM_025423	ENSMUSG00000035171	1110059E24Rik	-	RIKEN cDNA 1110059E24 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-117852122-4	chr2	117852028	117852228	+	959.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040631, intron 2 of 5)	intron (NR_040631, intron 2 of 5)	30200.0	NR_040631	73938.0	Mm.399107	NR_040631	ENSMUSG00000086221	4930412B13Rik	-	RIKEN cDNA 4930412B13 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-40095553-4	chr10	40095464	40095664	+	897.18335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 1 of 5)	intron (NM_001114332, intron 1 of 5)	46690.0	NM_028247	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-52941787-4	chr2	52941668	52941868	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	83900.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-54577439-4	chr12	54577332	54577532	+	912.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6BA|LTR|ERVK	68580.0	NR_035439	100316682.0		NR_035439	ENSMUSG00000106344	Mir1892	Mirn1892|mir-1892|mmu-mir-1892	microRNA 1892	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-62663578-4	chr4	62663457	62663657	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134257, intron 10 of 15)	intron (NM_134257, intron 10 of 15)	-10417.0	NM_001310706	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-77491949-2	chr11	77491849	77492049	+	854.1666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1463.0	NM_001004144	216963.0	Mm.290182	NM_001004144	ENSMUSG00000011877	Git1	Cat-1|p95Cat	G protein-coupled receptor kinase-interactor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4203052-1	chr19	4202952	4203152	+	581.0	f0_balb.idr	Intergenic	Intergenic	-1449.0	NM_011237	19367.0	Mm.277629	NM_011237	ENSMUSG00000024824	Rad9a	Rad9	RAD9 checkpoint clamp component A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-21033510-2	chr11	21033410	21033610	+	549.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57814.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165881119-4	chr2	165881008	165881208	+	972.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252587, intron 1 of 11)	intron (NM_001252587, intron 1 of 11)	1170.0	NM_001281926	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-31900761-4	chr11	31900714	31900914	+	738.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290678, intron 2 of 7)	intron (NM_001290678, intron 2 of 7)	29874.0	NM_026252	67579.0	Mm.339792	NM_026252	ENSMUSG00000020300	Cpeb4	Cpe-bp4|Cpeb-4|mCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding	2.04307336124317	2.00258034864822	2.21253342279324	2.61830557129185	1.94231757595308	1.36546464560509	2.22971776684758	2.63175262019762	-0.268201211300606	0.774113974166032	0.998431161219273
Merged-chr8-69091241-4	chr8	69091130	69091330	+	981.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007509, intron 1 of 13)	intron (NM_007509, intron 1 of 13)	-2008.0	NM_153054	110877.0	Mm.19301	NM_153054	ENSMUSG00000036330	Slc18a1	4832416I10Rik|Vat1|Vmat1	solute carrier family 18 (vesicular monoamine), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-178957337-2	chr2	178957143	178957343	+	601.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-457693.0	NM_026596	68175.0	Mm.158187	NM_026596		4930591A17Rik	-	RIKEN cDNA 4930591A17 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-105699322-4	chr5	105699219	105699419	+	847.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001122768)	promoter-TSS (NM_001122768)	-650.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	2.4623210930567	2.76575508214945	3.03446445254729	2.07819273475608	2.7481143572674	2.54043330753751	1.48309682906747	3.10821465414034	-0.0534222198304413	0.949048969566254	0.998431161219273
Merged-chr11-54787082-4	chr11	54786957	54787157	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178626, intron 1 of 5)	CpG	646.0	NM_178626	72729.0	Mm.29476	NM_178626	ENSMUSG00000052298	Cdc42se2	2810404F18Rik|AA408783|AA536669|SPEC2	CDC42 small effector 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-84188442-4	chr12	84188321	84188521	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163501, intron 1 of 12)	intron (NM_001163501, intron 1 of 12)	5594.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-180710948-3	chr2	180710928	180711128	+	938.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289651, intron 1 of 4)	intron (NM_001289651, intron 1 of 4)	700.0	NM_001289651	76425.0	Mm.41464	NM_029607	ENSMUSG00000027573	Gid8	2310003C23Rik|4833420G11Rik|AI451474|Twa1	GID complex subunit 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-20727934-4	chr9	20727835	20728035	+	865.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357635)	promoter-TSS (NM_001357635)	294.0	NM_173777	244723.0	Mm.293552	NM_173777	ENSMUSG00000032172	Olfm2	A030009A06Rik	olfactomedin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-73325953-6	chr14	73325842	73326042	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009029)	promoter-TSS (NM_009029)	-120.0	NM_009029	19645.0	Mm.273862	NM_009029	ENSMUSG00000022105	Rb1	Rb|Rb-1|pRb|pp105	RB transcriptional corepressor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-100923164-2	chr3	100923064	100923264	+	835.333374	f1_balb.idr|f1_c57bl6.idr	exon (NM_001165953, exon 1 of 7)	exon (NM_001165953, exon 1 of 7)	671.0	NM_001165953	229644.0	Mm.189351	NM_194343	ENSMUSG00000033233	Trim45	4921530N01Rik	tripartite motif-containing 45	protein-coding	0.734110043374833	0.785223851854271	2.11864089203416	1.42468847245732	1.35226032133546	1.40421888816701	0.772566436972834	1.30188584830052	-0.636663497289455	0.654374681824428	0.987615146053888
Merged-chr17-34150238-3	chr17	34150137	34150337	+	845.8110960000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010388, intron 3 of 5)	intron (NM_010388, intron 3 of 5)	-2954.0	NM_010387	14999.0	Mm.460938	NM_010387	ENSMUSG00000079547	H2-DMb1	AI385589|H-2Mb1|H2-Mb1	histocompatibility 2, class II, locus Mb1	protein-coding	2.97242187128335	3.12920209297188	3.6549555636032	2.22229367935492	5.12306963866286	4.58178087071296	4.11777578589872	4.68122023199252	2.20841410699478	1.46037428385089e-05	0.000631787403520778
Merged-chr11-68457457-2	chr11	68457357	68457557	+	890.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177320, intron 1 of 18)	intron (NM_177320, intron 1 of 18)	25332.0	NM_177320	320207.0	Mm.244960	NM_177320	ENSMUSG00000020901	Pik3r5	AV230647|F730038I15Rik|Foap2|p101	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-114284035-2	chr7	114283935	114284135	+	712.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur2|SINE|Alu	-7919.0	NM_011965	26440.0	Mm.121265	NM_011965	ENSMUSG00000030751	Psma1	C2|HC2|Pros-30|alpha-type	proteasome (prosome, macropain) subunit, alpha type 1	protein-coding	-0.70121692323671	-0.691108584364508	-0.241211193028357	-0.166897199968639	-0.700587733935071	-0.690359750800191	-0.69369550375725	-0.696536417376513	-3.22552977091651	0.26151418260318	1
Merged-chr13-37531234-2	chr13	37531134	37531334	+	693.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	185889.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-61413786-2	chr3	61413686	61413886	+	810.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49279.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-122478775-2	chr14	122478675	122478875	+	897.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009574, intron 2 of 2)	intron (NM_009574, intron 2 of 2)	3391.0	NM_009574	22772.0	Mm.308936	NM_009574	ENSMUSG00000061524	Zic2	HPE5|Ku	zinc finger protein of the cerebellum 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-121476912-3	chr10	121476804	121477004	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138956)	promoter-TSS (NM_138956)	-654.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	3.44401861714636	4.14245430041795	4.1282696922992	2.65683782585506	3.90728974752154	3.72457685421236	4.3168293883734	4.0387083905861	0.425944698237715	0.412762978833547	0.894783826796838
Merged-chr6-124863724-3	chr6	124863630	124863830	+	882.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_013488)	TTS (NM_013488)	253.0	NM_013533	14788.0	Mm.2514	NM_013533	ENSMUSG00000038390	Gpr162	A-2|BC031437|Grca	G protein-coupled receptor 162	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-60741949-2	chr9	60741849	60742049	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28828.0	NM_026235	67557.0	Mm.44546	NM_026235	ENSMUSG00000034839	Larp6	5430431G03Rik|AI552438|Achn	La ribonucleoprotein domain family, member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-14540406-1	chr5	14540306	14540506	+	575.0	f1_balb.idr	exon (NM_011995, exon 3 of 25)	exon (NM_011995, exon 3 of 25)	25488.0	NM_001110796	26875.0	Mm.146275	NM_011995	ENSMUSG00000061601	Pclo	Acz|Pico	piccolo (presynaptic cytomatrix protein)	protein-coding	0.535835656402832	0.564738179341243	0.555338580298179	0.725195252590976	1.05602818240135	1.09854248882216	1.17305832748582	1.32044322705412	3.83636424584078	0.0201035536465975	1
Merged-chr16-65365079-2	chr16	65364979	65365179	+	594.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-155550.0	NM_008849	18736.0	Mm.355440	NM_008849	ENSMUSG00000004842	Pou1f1	GHF-1|Hmp1|Pit-1|Pit1|Pit1-rs1|dw|dwarf	POU domain, class 1, transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-117432889-1	chr6	117432789	117432989	+	541.0	f1_balb.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-62346.0	NR_152214	100126203.0	Mm.217172	NR_152214		6820426E19Rik	Gm43983	RIKEN cDNA 6820426E19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78903082-1	chr15	78902982	78903182	+	628.0	f1_balb.idr	exon (NM_001316684, exon 6 of 18)	exon (NM_001316684, exon 6 of 18)	3314.0	NM_009164	20401.0	Mm.4462	NM_009164	ENSMUSG00000022436	Sh3bp1	3BP-1	SH3-domain binding protein 1	protein-coding	1.15826584292074	0.670025882465169	0.650177688973309	1.07422445999745	2.13344723945708	0.674400530068305	0.654619417968927	2.20606905712586	2.43753527703959	0.104419185018108	0.503950676527456
Merged-chr19-32276046-2	chr19	32275946	32276146	+	687.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001168525, intron 2 of 9)	MTB_Mm|LTR|ERVL-MaLR	-65033.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-103306174-2	chr15	103306074	103306274	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	4264.0	NM_030720	80910.0	Mm.160369	NM_030720	ENSMUSG00000063234	Gpr84	EX33	G protein-coupled receptor 84	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-157566250-4	chr2	157566142	157566342	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001355426, exon 1 of 2)	5' UTR (NM_001355426, exon 1 of 2)	119.0	NM_001355426	53619.0	Mm.480461	NM_016916	ENSMUSG00000067787	Blcap	AI462828|Bc10	bladder cancer associated protein	protein-coding	3.40156958141184	2.83387852924627	2.21360207005295	3.7019502152452	3.36414964140374	2.85576422483013	3.48988777154387	4.02774005296997	0.53803360136142	0.40030195991198	0.885176145862419
Merged-chr16-35862271-2	chr16	35862171	35862371	+	606.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039530, intron 4 of 16)	B3|SINE|B2	9111.0	NM_001039530	547253.0	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10252263-2	chr19	10252163	10252363	+	954.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198114, intron 16 of 19)	intron (NM_198114, intron 16 of 19)	-11515.0	NM_001033481	225908.0	Mm.329716	NM_001033481	ENSMUSG00000036098	Myrf	6030439E18|Gm1804|Gm98|Mrf	myelin regulatory factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-73425984-4	chr13	73425858	73426058	+	821.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41425.0	NM_145376	210992.0	Mm.284649	NM_145376	ENSMUSG00000021608	Lpcat1	2900035H07Rik|Aytl2|BB137372|BC005662|C87117|LPCAT|rd11	lysophosphatidylcholine acyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-142038075-3	chr7	142037997	142038197	+	600.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357705, intron 1 of 4)	intron (NM_001357705, intron 1 of 4)	22756.0	NM_001347560	101513.0	Mm.53259	NM_028308	ENSMUSG00000025147	Mob2	1110017M21Rik|2700078K21Rik|AI256456|Mmh	MOB kinase activator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-118081682-4	chr10	118081568	118081768	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-60119.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	-0.814646203414956	-0.948132458442233	-0.260580320090758	-0.961569116139344	-0.964955961651228	-0.945393490738569	-0.957910421812185	-0.96115068189259	-3.02226751932349	0.31744843379996	1
Merged-chr7-80390053-2	chr7	80389952	80390152	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001081454, exon 16 of 16)	3' UTR (NM_001081454, exon 16 of 16)	-2106.0	NM_010194	14159.0	Mm.48757	NM_010194	ENSMUSG00000053158	Fes	AI586313|BB137047|FPS|c-fes	feline sarcoma oncogene	protein-coding	1.00214813423674	0.597562601496212	0.585949619133512	1.29903515492009	1.47686730814444	0.600156005347828	1.4659095799029	0.578458939069424	0.854440234440691	0.606536639509006	0.974576632476413
Merged-chr15-98917224-2	chr15	98917124	98917324	+	680.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029098, intron 1 of 16)	intron (NM_029098, intron 1 of 16)	874.0	NM_029098	74775.0	Mm.385020	NM_029098	ENSMUSG00000022999	Lmbr1l	1110013E13Rik|AA415653|D15Ertd735e|Limr	limb region 1 like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-8003970-3	chr6	8003881	8004081	+	676.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037865, intron 33 of 34)	intron (NM_001037865, intron 33 of 34)	158757.0	NM_052993	94192.0	Mm.102752	NM_052993	ENSMUSG00000042460	C1galt1	2210410E06Rik|AV284120|T-synthase	core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-85091449-4	chr15	85091417	85091617	+	876.4226070000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080470, intron 16 of 24)	intron (NM_080470, intron 16 of 24)	40440.0	NM_080470	140557.0	Mm.182737	NM_080470	ENSMUSG00000022432	Smc1b	SMC-1B|SMC1beta|Smc1l2	structural maintenance of chromosomes 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81846962-1	chr15	81846862	81847062	+	785.0	f1_c57bl6.idr	Intergenic	Intergenic	11364.0	NM_020507	57259.0	Mm.323595	NM_020507	ENSMUSG00000048546	Tob2	2900090N22Rik|4930545K18Rik|AV071822|mKIAA1663	transducer of ERBB2, 2	protein-coding	2.50946613028798	0.88733117475797	0.860517770554006	2.18249428068566	1.04529235467223	1.18496076269747	0.866539818183155	2.49625615964069	-0.545315170199091	0.685699672240329	0.996533206832645
Merged-chr12-99284653-4	chr12	99284550	99284750	+	883.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183186, intron 4 of 5)	intron (NM_183186, intron 4 of 5)	-121842.0	NR_038130	67639.0	Mm.87374	NR_038130	ENSMUSG00000113210	4930474N09Rik	-	RIKEN cDNA 4930474N09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-8859296-2	chr10	8859196	8859396	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 1 of 19)	intron (NM_175155, intron 1 of 19)	26774.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24455853-1	chr17	24455753	24455953	+	719.0	f1_c57bl6.idr	promoter-TSS (NM_007893)	promoter-TSS (NM_007893)	-461.0	NR_125990	13560.0	Mm.163132	NM_007893	ENSMUSG00000024137	E4f1	p120E4F|phi-AP3	E4F transcription factor 1	protein-coding	3.21529078085445	4.02284657316207	2.73487065444528	2.39982084053754	2.63124449124449	2.97390220221422	1.42827991585429	1.66325632256211	-1.6299113092507	0.0506632424563863	0.327862773997693
Merged-chr4-150642358-2	chr4	150642258	150642458	+	793.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355737, intron 4 of 8)	intron (NM_001355737, intron 4 of 8)	9816.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90490473-4	chr2	90490368	90490568	+	953.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	-11294.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-9133524-1	chr4	9133424	9133624	+	631.0	f1_c57bl6.idr	Intergenic	L2c|LINE|L2	-135769.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	0.254058296389706	-0.120169107726763	0.747109242018011	-0.129852639450924	0.148366114055704	-0.118940477752464	-0.124423522088225	-0.129114091633488	-2.37244364002904	0.307736268392813	1
Merged-chr4-114926417-2	chr4	114926317	114926517	+	747.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015758)	promoter-TSS (NM_015758)	-404.0	NM_015758	30923.0	Mm.377122	NM_015758	ENSMUSG00000044518	Foxe3	FREAC8|dyl|rct	forkhead box E3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-184137441-2	chr1	184137341	184137541	+	826.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	103060.0	NM_022019	63953.0	Mm.404024	NM_022019	ENSMUSG00000039384	Dusp10	2610306G15Rik|AI158871|MKP-5|MKP5	dual specificity phosphatase 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-67559774-4	chr11	67559655	67559855	+	997.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008088, intron 1 of 13)	intron (NM_008088, intron 1 of 13)	-26745.0	NM_001109657	14457.0	Mm.40338	NM_008088	ENSMUSG00000033066	Gas7	AW124766|B230343A10Rik|Gas7-cb	growth arrest specific 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-34938587-4	chr6	34938479	34938679	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009292, intron 8 of 8)	intron (NM_009292, intron 8 of 8)	17631.0	NM_009292	20899.0	Mm.5171	NM_009292	ENSMUSG00000029848	Stra8	-	stimulated by retinoic acid gene 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71570506-4	chr8	71570414	71570614	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357182)	promoter-TSS (NM_001357182)	-80.0	NM_001357182	26457.0	Mm.38165	NM_011977	ENSMUSG00000031808	Slc27a1	FATP1|Fatp	solute carrier family 27 (fatty acid transporter), member 1	protein-coding	5.71994545376739	5.71330398457257	6.26576368025417	5.46922529324418	5.96870364254207	6.00941746263593	6.63319484270278	5.93357775236181	0.379215647885225	0.151785505644643	0.605292210300608
Merged-chr17-8902176-4	chr17	8902095	8902295	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347321, intron 2 of 21)	ORR1D2|LTR|ERVL-MaLR	52210.0	NM_001347321	23984.0	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-170184783-4	chr2	170184675	170184875	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42100.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35420589-4	chr17	35420490	35420690	+	813.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4257.0	NM_023124	15019.0	Mm.486287	NM_023124		H2-Q8	H-2Q8|MMS10-T|Ms10t|Qa-2|Qa-8|Qa8	histocompatibility 2, Q region locus 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-72366701-4	chr2	72366579	72366779	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023057, intron 4 of 19)	intron (NM_023057, intron 4 of 19)	80978.0	NM_178084	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-59076334-4	chr19	59076234	59076434	+	762.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175172)	promoter-TSS (NM_175172)	-265.0	NM_001114312	71653.0	Mm.37338	NM_175172	ENSMUSG00000041362	Shtn1	4930506M07Rik|Shootin1|mKIAA1598	shootin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-147401592-2	chr4	147401492	147401692	+	995.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039209, intron 1 of 2)	intron (NM_001039209, intron 1 of 2)	-151685.0	NM_001014397	433804.0	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154	zinc finger protein 985	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-125390148-4	chr5	125390056	125390256	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019639)	promoter-TSS (NM_019639)	-139.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	5.76901659892997	5.4193686052186	5.44449370457913	4.840451737843	5.27409387213657	5.85142385369642	4.12183909363907	5.52321629613516	-0.0993434848160997	0.783257201937832	0.998431161219273
Merged-chr6-31385780-4	chr6	31385679	31385879	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040300, intron 2 of 2)	intron (NR_040300, intron 2 of 2)	12994.0	NR_040300	100503869.0	Mm.370532	NR_040300	ENSMUSG00000086212	Mkln1os	Gm13845	muskelin 1, intracellular mediator containing kelch motifs, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-138085168-2	chr1	138085068	138085268	+	753.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001268286, intron 16 of 28)	Lx5|LINE|L1	89958.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-18965082-4	chr10	18964987	18965187	+	996.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46876.0	NM_001166402	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-67636444-1	chr15	67636344	67636544	+	809.0	f0_balb.idr	Intergenic	MLT1F|LTR|ERVL-MaLR	409675.0	NR_045140	69334.0	Mm.63770	NR_045140	ENSMUSG00000102069	1700012I11Rik	-	RIKEN cDNA 1700012I11 gene	ncRNA	0.395347629317897	0.0306629733416245	0.0248935850115826	0.0204350821846155	0.676642278197614	0.663939241225262	0.0261669500478313	0.021214451207122	1.96273646015171	0.38037948766835	1
Merged-chr2-168978238-4	chr2	168978143	168978343	+	983.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040326)	promoter-TSS (NR_040326)	-26.0	NR_040326	75508.0	Mm.271256	NR_040326	ENSMUSG00000086348	1700017J07Rik	-	RIKEN cDNA 1700017J07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-87287514-2	chr17	87287414	87287614	+	649.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028639, intron 1 of 19)	intron (NM_028639, intron 1 of 19)	4628.0	NM_028639	225049.0	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-174453894-4	chr2	174453840	174454040	+	903.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080971, intron 1 of 3)	intron (NM_001080971, intron 1 of 3)	3345.0	NM_001080971	545486.0	Mm.45285	NM_001080971	ENSMUSG00000016255	Tubb1	2810484G07Rik|M(beta)1	tubulin, beta 1 class VI	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-78415631-2	chr17	78415531	78415731	+	749.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360407, intron 1 of 9)	intron (NM_001360407, intron 1 of 9)	2521.0	NM_001285949	225020.0	Mm.236835	NM_199448	ENSMUSG00000056121	Fez2	9030616F16|D17Ertd315e	fasciculation and elongation protein zeta 2 (zygin II)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-41084939-2	chr3	41084839	41085039	+	759.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1893.0	NM_027558	70804.0	Mm.40321	NM_027558	ENSMUSG00000049940	Pgrmc2	4631434O19Rik|5730409G06Rik|DG6|PMBP	progesterone receptor membrane component 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-62065794-2	chr15	62065694	62065894	+	699.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_132746, intron 1 of 6)	intron (NR_132746, intron 1 of 6)	26537.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-152149508-4	chr3	152149426	152149626	+	907.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016867, intron 1 of 5)	intron (NM_016867, intron 1 of 5)	16374.0	NM_016867	54120.0	Mm.97	NM_016867	ENSMUSG00000039131	Gipc2	2200002N01Rik|AU021850|Semcap2	GIPC PDZ domain containing family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89102044-4	chr3	89101941	89102141	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134469)	promoter-TSS (NM_134469)	-74.0	NM_001253751	110196.0	Mm.39472	NM_134469	ENSMUSG00000059743	Fdps	6030492I17Rik|AI256750|Fdpsl1|mKIAA1293	farnesyl diphosphate synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-9647464-4	chr4	9647375	9647575	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290367, intron 1 of 22)	intron (NM_001290367, intron 1 of 22)	-3758.0	NM_001177852	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	3.68781688796856	3.08886749763332	3.57761440132684	3.3993632706158	3.66042689126978	4.01022062572505	3.52299040655092	3.41664761386836	0.311660588486976	0.549125157837548	0.958545631969191
Merged-chr10-62793007-2	chr10	62792907	62793107	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026201)	promoter-TSS (NM_026201)	-639.0	NM_026201	67500.0	Mm.196371	NM_026201	ENSMUSG00000020074	Ccar1	2610511G16Rik|9430036H15Rik|Carp1	cell division cycle and apoptosis regulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90532513-2	chr2	90532413	90532613	+	737.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	48134.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-74492758-2	chr11	74492658	74492858	+	812.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001015046, intron 2 of 24)	intron (NM_001015046, intron 2 of 24)	97400.0	NM_001015046	380711.0	Mm.425690	NM_001015046	ENSMUSG00000038807	Rap1gap2	AU067654|Garnl4|Gm1561|mKIAA1039	RAP1 GTPase activating protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-23609065-2	chr16	23608965	23609165	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023386)	promoter-TSS (NM_023386)	-854.0	NM_023386	67775.0	Mm.475107	NM_023386	ENSMUSG00000033355	Rtp4	5830458K16Rik|Ifrg28	receptor transporter protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-65788346-4	chr11	65788258	65788458	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009157)	promoter-TSS (NM_009157)	1.0	NM_009157	26398.0	Mm.412922	NM_009157	ENSMUSG00000033352	Map2k4	JNKK1|MEK4|MKK4|PRKMK4|Sek1|Serk1	mitogen-activated protein kinase kinase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128249817-2	chr2	128249717	128249917	+	866.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	122242.0	NM_001284410	12125.0	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31573129-4	chr14	31573036	31573236	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009937, intron 1 of 16)	intron (NM_009937, intron 1 of 16)	4247.0	NM_009937	382864.0	Mm.239821	NM_009937	ENSMUSG00000057606	Colq	A130034K24Rik	collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-100557764-2	chr5	100557664	100557864	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_139198, intron 3 of 4)	intron (NM_139198, intron 3 of 4)	14441.0	NM_139198	231507.0	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	0.38955846949441	0.205175130553805	-0.142415717606315	0.369549518968037	-0.150875935181856	-0.136825919851991	-0.141410900408127	-0.145313512615122	-3.77305088279917	0.101904156730478	1
Merged-chr2-13561941-2	chr2	13561841	13562041	+	683.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-12370.0	NM_011701	22352.0	Mm.268000	NM_011701	ENSMUSG00000026728	Vim	-	vimentin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-183508043-1	chr1	183507943	183508143	+	560.0	f0_balb.idr	Intergenic	Intergenic	88795.0	NM_001308052	78772.0	Mm.29003	NM_030175	ENSMUSG00000053461	Hhipl2	4930507C10Rik|AW208802|Hhip3	hedgehog interacting protein-like 2	protein-coding	0.872657286207417	1.44009797904327	1.49541265962723	0.717819301690231	0.878639552401192	1.45297234594871	1.50972574762182	0.719611272613587	0.0402423168864087	0.977546521102628	0.998431161219273
Merged-chr11-74637611-1	chr11	74637511	74637711	+	543.0	f1_balb.idr	intron (NM_001013784, intron 3 of 3)	intron (NM_001013784, intron 3 of 3)	-11884.0	NM_001081158	74148.0	Mm.214574	NM_001081158	ENSMUSG00000020741	Cluh	1300001I01Rik|Kiaa0664|mKIAA0664	clustered mitochondria (cluA/CLU1) homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-56439956-1	chr18	56439856	56440056	+	696.5	f0_balb.idr	intron (NM_026240, intron 1 of 13)	intron (NM_026240, intron 1 of 13)	7824.0	NM_026240	107022.0	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|Gramd2b|NS3TP2	GRAM domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-29270676-2	chr6	29270576	29270776	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1812.0	NM_001190461	69573.0	Mm.45161	NM_023516	ENSMUSG00000043421	Hilpda	2310016C08Rik|AW049004|Hig2	hypoxia inducible lipid droplet associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-177487974-3	chr1	177487877	177488077	+	737.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42156.0	NM_013915	30928.0	Mm.330700	NM_013915	ENSMUSG00000063659	Zbtb18	RP58|Zfp238|Znf238.|zfp-238	zinc finger and BTB domain containing 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-142095356-4	chr7	142095264	142095464	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008748)	promoter-TSS (NM_008748)	-80.0	NM_008748	18218.0	Mm.39725	NM_008748	ENSMUSG00000037887	Dusp8	5530400B01Rik|AI593498|Nttp1	dual specificity phosphatase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98741862-4	chr11	98741782	98741982	+	995.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001313983)	promoter-TSS (NM_001313983)	97.0	NM_001313983	21833.0	Mm.265917	NM_178060	ENSMUSG00000058756	Thra	6430529J03Rik|AW259572|Erba|Nr1a1|Rvr|T3R[a]|T3Ralpha|Thra1|Thra2|c-erbA-1|c-erbA-alpha|c-erbAalpha	thyroid hormone receptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-107100486-4	chr8	107100360	107100560	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-3915.0	NR_104410	21750.0	Mm.6402	NM_009353	ENSMUSG00000031921	Terf2	TRF2	telomeric repeat binding factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-54663606-1	chr1	54663506	54663706	+	560.0	f1_balb.idr	intron (NM_001081433, intron 19 of 27)	(CAAAAA)n|Simple_repeat|Simple_repeat	-105922.0	NM_001163314	241062.0	Mm.103539	NM_175508	ENSMUSG00000073678	Pgap1	5033403E17Rik|9030223K07Rik|A530084K22|D230012E17Rik|oto	post-GPI attachment to proteins 1	protein-coding	0.853009543044074	0.578282571509239	0.567316738323092	0.906460967682705	1.19581620762752	1.59628788575665	1.09216610291707	0.560254198248887	2.11767973752252	0.180310177728545	0.652400938596829
Merged-chr2-84608227-1	chr2	84608127	84608327	+	950.0	f1_c57bl6.idr	intron (NM_001355064, intron 16 of 18)	intron (NM_001355064, intron 16 of 18)	41253.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	-1.05427326193291	-1.03570194074565	-0.879154215749717	-1.05124488368308	-0.687671082709643	-1.03332322628081	-0.875031633807149	-1.05092502691648	1.58131202794897	0.597958077664382	1
Merged-chr16-32645646-2	chr16	32645546	32645746	+	773.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110147, intron 1 of 13)	intron (NM_001110147, intron 1 of 13)	1003.0	NM_016788	51789.0	Mm.251115	NM_016788	ENSMUSG00000022791	Tnk2	Ack|Ack-1|Ack1|Cdgip|Pyk1	tyrosine kinase, non-receptor, 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-107935021-3	chr13	107934880	107935080	+	930.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44916.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	1.26045101020349	0.541163566573898	0.699937517164415	1.04098789364616	0.522052216223715	0.5426845427165	0.535921666779954	1.28751908594678	-0.72704577707968	0.682752223234591	1
Merged-chr10-87860284-4	chr10	87860198	87860398	+	867.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001111276)	promoter-TSS (NM_001111276)	-813.0	NM_001111274	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35195876-4	chr17	35195766	35195966	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_105939)	TTS (NR_105939)	894.0	NR_105939	102465588.0		NR_105939	ENSMUSG00000098291	Mir6973a	Gm27967|mmu-mir-6973a	microRNA 6973a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56630414-3	chr17	56630317	56630517	+	716.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175350, intron 1 of 21)	IAPLTR2a|LTR|ERVK	2274.0	NM_175350	106757.0	Mm.23401	NM_175350	ENSMUSG00000040828	Catsperd	4921529N20Rik|4933402B14Rik|619718|AW045609|Gm6095|Tmem146	cation channel sperm associated auxiliary subunit delta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-12010359-2	chr4	12010259	12010459	+	823.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43785.0	NR_040577	100503636.0	Mm.209078	NR_040577		1700123M08Rik	1600025K15Rik	RIKEN cDNA 1700123M08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4307505-1	chr19	4307405	4307605	+	581.0	f1_balb.idr	Intergenic	Intergenic	-1283.0	NM_001290818	110355.0	Mm.254144	NM_130863	ENSMUSG00000024858	Grk2	Adrbk-1|Adrbk1|Bark-1|beta ARK|betaARK1	G protein-coupled receptor kinase 2	protein-coding	-1.20406370813143	-1.56956373024278	-1.57884638916872	-1.58647144159385	-1.598104728449	-1.56755213932999	-1.57674499865798	-1.58510656085539	-1.70745470802464	0.626337835847419	1
Merged-chr1-131700584-4	chr1	131700484	131700684	+	997.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311096, intron 4 of 4)	intron (NM_001311096, intron 4 of 4)	11889.0	NM_145509	226421.0	Mm.44508	NM_145509	ENSMUSG00000052688	Rab7b	5430435G22Rik	RAB7B, member RAS oncogene family	protein-coding	5.73818282335897	5.20434833709705	6.13243788974451	6.55689843793033	4.89571061851071	4.54425513064566	4.82683100426382	4.31592523813412	-1.52680663156475	5.43879418757872e-06	0.000272651752072017
Merged-chr4-147346834-2	chr4	147346734	147346934	+	685.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039209, intron 1 of 2)	ORR1F|LTR|ERVL-MaLR	170968.0	NM_001039209	195531.0	Mm.270762	NM_001039209	ENSMUSG00000078496	Zfp982	Gm13152	zinc finger protein 982	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-80329843-4	chr12	80329731	80329931	+	812.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61846.0	NR_037207	100526530.0		NR_037207	ENSMUSG00000105972	Mir1843a	Mir1843|mir-1843a|mmu-mir-1843|mmu-mir-1843a	microRNA 1843a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-57075356-4	chr9	57075268	57075468	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_152107, exon 2 of 2)	non-coding (NR_152107, exon 2 of 2)	681.0	NR_152107	72588.0	Mm.70350	NR_152107		2700012I20Rik	-	RIKEN cDNA 2700012I20 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116037448-1	chr11	116037348	116037548	+	607.0	f1_c57bl6.idr	intron (NM_001286006, intron 1 of 15)	intron (NM_001286006, intron 1 of 15)	7132.0	NM_172569	217331.0	Mm.297706	NM_172569	ENSMUSG00000020770	Unk	B230379M23Rik|Unkh|Zc3h5|Zc3hdc5|mKIAA1753	unkempt family zinc finger	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45338825-2	chr7	45338725	45338925	+	993.3333130000001	f1_balb.idr|f1_c57bl6.idr	TTS (NM_029741)	TTS (NM_029741)	3556.0	NM_010473	15464.0	Mm.39968	NM_010473	ENSMUSG00000038239	Hrc	-	histidine rich calcium binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-91156717-4	chr6	91156590	91156790	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144919)	promoter-TSS (NM_144919)	-125.0	NM_144919	232232.0	Mm.206218	NM_144919	ENSMUSG00000034245	Hdac11	-	histone deacetylase 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-86224750-4	chr3	86224612	86224812	+	816.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030695)	promoter-TSS (NM_030695)	22.0	NM_001077688	80877.0	Mm.439825	NM_030695	ENSMUSG00000028080	Lrba	C80285|D3Ertd775e|Lab300|Lba	LPS-responsive beige-like anchor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-12300948-2	chr12	12300848	12301048	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029758, intron 2 of 12)	intron (NM_029758, intron 2 of 12)	38809.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-35076141-4	chr12	35076040	35076240	+	865.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001014973, intron 1 of 25)	intron (NM_001014973, intron 1 of 25)	28951.0	NM_001014973	217463.0	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	2.15090253033504	2.83196079641953	2.45448363175837	1.23183897656219	2.16986399707814	2.93558551590145	1.26835213021928	2.03185110075261	-0.111567169461661	0.913105549992106	0.998431161219273
Merged-chr3-81127267-3	chr3	81127172	81127372	+	654.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019971, intron 1 of 5)	intron (NM_019971, intron 1 of 5)	90856.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	-1.7024385483431	-1.81249224917775	-1.82134771053534	-1.82862185015837	-1.70038292649591	-1.81057323376012	-1.81934302819017	-1.82731978264371	0.0376840119903864	0.991491645451152	1
Merged-chr3-95929191-4	chr3	95929095	95929295	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253758)	promoter-TSS (NM_001253758)	-62.0	NM_001253758	66471.0	Mm.218657	NM_023210	ENSMUSG00000015749	Anp32e	2810018A15Rik|AI047746|AI326868|CPD1|LANP-L|LANPL|mLANP-L	acidic (leucine-rich) nuclear phosphoprotein 32 family, member E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3655031-2	chr19	3654931	3655131	+	659.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_008513, intron 2 of 22)	intron (NM_008513, intron 2 of 22)	31533.0	NM_008513	16973.0	Mm.274581	NM_008513	ENSMUSG00000024913	Lrp5	BMND1|HBM|LR3|LRP7|OPPG|mKIAA4142	low density lipoprotein receptor-related protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126502518-4	chr7	126502416	126502616	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347658)	promoter-TSS (NM_001347658)	-91.0	NM_001347658	233871.0	Mm.231450	NM_183020	ENSMUSG00000032637	Atxn2l	A2D|A2LG|A2RP|A2lp|Atxnl2	ataxin 2-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-12461086-4	chr19	12461000	12461200	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010821, exon 2 of 2)	5' UTR (NM_010821, exon 2 of 2)	321.0	NM_010821	17476.0	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	2.72309934240058	2.54608519893304	2.45818454746413	2.96716541736016	3.39002952458184	2.85041190392533	3.76624476964275	2.39954345433561	0.928424948280496	0.178410154176176	0.648969449595264
Merged-chr15-99688949-3	chr15	99688861	99689061	+	620.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009597, intron 3 of 11)	intron (NM_009597, intron 3 of 11)	-3263.0	NM_001289791	11419.0	Mm.440107	NM_009597	ENSMUSG00000023017	Asic1	AI843610|ASIC|ASIC1a|Accn2|B530003N02Rik|BNaC2	acid-sensing (proton-gated) ion channel 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-62448537-3	chr15	62448436	62448636	+	808.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-229085.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-43862887-4	chr2	43862768	43862968	+	945.43335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301831, intron 5 of 14)	intron (NM_001301831, intron 5 of 14)	114044.0	NM_001301831	76117.0	Mm.217350	NM_153820	ENSMUSG00000049744	Arhgap15	5830480G12Rik	Rho GTPase activating protein 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-144296477-2	chr1	144296354	144296554	+	552.5	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47350.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-53556304-4	chr15	53556200	53556400	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177225, intron 4 of 4)	intron (NM_177225, intron 4 of 4)	57979.0	NR_039538	100628567.0		NR_039538	ENSMUSG00000104794	Mir28c	mmu-mir-28c	microRNA 28c	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-136979600-4	chr6	136979514	136979714	+	909.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25091.0	NM_023898	78600.0	Mm.290622	NM_023898	ENSMUSG00000064330	Pde6h	A930033D18Rik|PDEgamma	phosphodiesterase 6H, cGMP-specific, cone, gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-130916231-2	chr4	130916131	130916331	+	751.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010686, intron 1 of 7)	intron (NM_010686, intron 1 of 7)	2897.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-148316370-3	chr3	148316270	148316470	+	927.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	638265.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	1.62880522945855	1.10457418245018	1.76428000834298	1.27418539018544	1.93002557373819	1.53631499963452	2.00327549442487	1.93904109488899	1.27839210287303	0.247773958850797	0.747080687713142
Merged-chr9-15710285-4	chr9	15710194	15710394	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172289, intron 1 of 10)	intron (NM_172289, intron 1 of 10)	556.0	NM_172289	234967.0	Mm.138815	NM_172289	ENSMUSG00000043885	Slc36a4	6330573I15Rik|PAT4	solute carrier family 36 (proton/amino acid symporter), member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-142904852-3	chr5	142904775	142904975	+	827.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007393, intron 3 of 5)	intron (NM_007393, intron 3 of 5)	1879.0	NM_007393	11461.0	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-58978720-4	chr11	58978606	58978806	+	997.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053168, intron 1 of 5)	intron (NM_053168, intron 1 of 5)	613.0	NM_053168	94091.0	Mm.248049	NM_053168	ENSMUSG00000020455	Trim11	-	tripartite motif-containing 11	protein-coding	3.68830601587153	5.02057990749773	4.61806504317797	3.59296550414419	3.50877020947769	4.09330621884925	2.95168027925258	4.25174241792596	-0.763420844078022	0.147448071260442	0.597466522728415
Merged-chr10-94728356-3	chr10	94728263	94728463	+	643.722229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029852, intron 4 of 15)	B1_Mm|SINE|Alu	39573.0	NM_029852	77048.0	Mm.296971	NM_029852	ENSMUSG00000020024	Cep83	2600001G24Rik|4921537D05Rik|5730513H21Rik|Ccdc41	centrosomal protein 83	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-131871615-2	chr4	131871511	131871711	+	543.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2B2|LTR|ERVL	-2028.0	NM_020587	57317.0	Mm.2478	NM_020587	ENSMUSG00000028911	Srsf4	5730499P16Rik|AW550192|MNCb-2616|SRp75|Sfrs4	serine/arginine-rich splicing factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-82043794-1	chr15	82043694	82043894	+	616.0	f1_balb.idr	intron (NM_011482, intron 2 of 2)	intron (NM_011482, intron 2 of 2)	3804.0	NM_011482	20826.0	Mm.299312	NM_011482	ENSMUSG00000063480	Snu13	FA-1|Fta1|Nhp2l1|Ssfa1	SNU13 homolog, small nuclear ribonucleoprotein (U4/U6.U5)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-60964149-4	chr8	60964050	60964250	+	916.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007711, intron 1 of 11)	intron (NM_007711, intron 1 of 11)	-9351.0	NM_173876	12725.0	Mm.25263	NM_007711	ENSMUSG00000004319	Clcn3	Clc3	chloride channel, voltage-sensitive 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16316823-2	chr7	16316723	16316923	+	711.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133234, intron 3 of 3)	intron (NM_133234, intron 3 of 3)	7240.0	NM_133234	170770.0	Mm.7660	NM_133234	ENSMUSG00000002083	Bbc3	PUMA|PUMA/JFY1	BCL2 binding component 3	protein-coding	2.30912636127359	1.85189465407072	1.28983556019693	1.44228362466345	2.32973279117545	1.08236730124819	1.29836762505087	1.74248085657964	-0.199701592994109	0.862093632216741	0.998431161219273
Merged-chr19-29252351-5	chr19	29252185	29252385	+	874.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001048177, intron 1 of 23)	intron (NM_001048177, intron 1 of 23)	482.0	NM_008413	16452.0	Mm.275839	NM_008413	ENSMUSG00000024789	Jak2	Fd17	Janus kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-31896217-2	chr11	31896117	31896317	+	777.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290678, intron 2 of 7)	intron (NM_001290678, intron 2 of 7)	25277.0	NM_026252	67579.0	Mm.339792	NM_026252	ENSMUSG00000020300	Cpeb4	Cpe-bp4|Cpeb-4|mCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding	0.239295627919492	0.898823687945215	0.951142845414932	0.248660192397808	0.745571125600876	0.469096372364677	0.255870753545655	0.249641951830947	-1.11513611482668	0.564779593126642	1
Merged-chr8-72271095-1	chr8	72270995	72271195	+	1000.0	f1_balb.idr	Intergenic	Intergenic	31077.0	NM_007456	11767.0	Mm.290086	NM_007456	ENSMUSG00000003033	Ap1m1	AA408894|AP47|Adtm1A|Cltnm|mu1A	adaptor-related protein complex AP-1, mu subunit 1	protein-coding	1.55321734832685	0.654334001678344	0.840618383876483	0.634896564967488	0.92904066045171	1.33622332578927	0.846682266406219	1.23180985262044	0.433378415065507	0.770455692359411	0.998431161219273
Merged-chr10-75220905-2	chr10	75220805	75221005	+	650.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145826, intron 1 of 18)	intron (NM_001145826, intron 1 of 18)	8515.0	NM_001145826	74392.0	Mm.27716	NM_153406	ENSMUSG00000033444	Specc1l	4930470P14Rik|4932439K10Rik|9530057A13Rik|AI317249|Cytsa|mKIAA0376	sperm antigen with calponin homology and coiled-coil domains 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129406669-4	chr4	129406550	129406750	+	864.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23931.0	NR_151530	320896.0	Mm.404042	NR_151530		C330020E22Rik	-	RIKEN cDNA C330020E22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-86066739-4	chr5	86066635	86066835	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1152.0	NM_007683	12617.0	Mm.4649	NM_007683	ENSMUSG00000029253	Cenpc1	CENP-C|Cenpc	centromere protein C1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132624412-4	chr4	132624294	132624494	+	731.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-14652.0	NM_210071	14050.0	Mm.227733	NM_010166	ENSMUSG00000028886	Eya3	AI844637	EYA transcriptional coactivator and phosphatase 3	protein-coding	2.85255509550482	2.2681335139649	2.72531487341898	3.14498965341039	2.31532951913588	2.59493066806136	3.18607684807396	1.96615080458719	-0.376395115571528	0.62187925975495	0.979537295922371
Merged-chr1-155025970-3	chr1	155025872	155026072	+	749.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57292.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-24891694-4	chr16	24891651	24891851	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 10 of 12)	intron (NM_178665, intron 10 of 12)	-167888.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-43017664-4	chr17	43017581	43017781	+	924.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178589, intron 1 of 5)	intron (NM_178589, intron 1 of 5)	1126.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	3.15034284941826	3.38316956084068	3.76864024912913	1.45244266339581	2.87795889952956	3.14150339191761	2.7005250205583	1.73913914610894	-0.804407914620616	0.328946882797572	0.831468686756728
Merged-chr9-56417122-2	chr9	56417022	56417222	+	887.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_172924, intron 1 of 6)	intron (NM_172924, intron 1 of 6)	928.0	NM_172924	244895.0	Mm.490331	NM_172924	ENSMUSG00000074305	Peak1	1110049L02Rik|9530046P14|AA690169|BE132841|C230081A13Rik|SGK269|mKIAA2002	pseudopodium-enriched atypical kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-49326463-4	chr13	49326366	49326566	+	975.033325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15083.0	NM_001039179	76895.0	Mm.197387	NM_029791	ENSMUSG00000037933	Bicd2	-	BICD cargo adaptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-106909192-2	chr4	106909141	106909341	+	747.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2229.0	NM_198438	72475.0	Mm.195635	NM_023672	ENSMUSG00000061887	Ssbp3	2610021L12Rik|2610200M23Rik|5730488C10Rik|AI854733|AW551939|LAST|SSDP1	single-stranded DNA binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-110399586-2	chr13	110399486	110399686	+	883.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_152804, intron 12 of 13)	MER5A|DNA|hAT-Charlie	4542.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-41526483-1	chr5	41526383	41526583	+	635.0	f1_c57bl6.idr	Intergenic	Intergenic	181208.0	NM_001310592	100972.0	Mm.41555	NM_027295	ENSMUSG00000029128	Rab28	2700023P08Rik|AW496496	RAB28, member RAS oncogene family	protein-coding	1.05527383908018	1.00755499224187	0.963147350457428	0.928266977824193	0.877878956734134	0.516384607363134	0.508500350955496	0.501757227544888	-2.34180568338502	0.16532882468416	1
Merged-chr7-126175004-2	chr7	126174904	126175104	+	790.200012	f1_balb.idr|f1_c57bl6.idr	intron (NM_028816, intron 1 of 23)	intron (NM_028816, intron 1 of 23)	25497.0	NM_001311143	74204.0	Mm.235663	NM_028816	ENSMUSG00000000131	Xpo6	2610005L19Rik|AL022631|C230091E20Rik|R75304|Ranbp20|exp6|mKIAA0370	exportin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126752030-4	chr7	126751937	126752137	+	858.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4|LINE|L1	-7589.0	NM_011952	26417.0	Mm.8385	NM_011952	ENSMUSG00000063065	Mapk3	Erk-1|Erk1|Ert2|Esrk1|Mnk1|Mtap2k|Prkm3|p44|p44erk1|p44mapk	mitogen-activated protein kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-81578088-4	chr7	81577977	81578177	+	939.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004185, intron 2 of 9)	intron (NM_001004185, intron 2 of 9)	6785.0	NM_001004185	434204.0	Mm.181641	NM_001004185	ENSMUSG00000045795	Whamm	BB081391|Whdc1|mKIAA1971	WAS protein homolog associated with actin, golgi membranes and microtubules	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-97034387-3	chr7	97034287	97034487	+	940.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153591, intron 9 of 13)	L2a|LINE|L2	-47364.0	NM_001162477	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	2.55442082215728	3.71790104457022	3.73692138145108	3.423325082695	2.70537183158848	3.74420332191353	3.76473868103659	3.44069798304631	0.0635505982719683	0.915031064980892	0.998431161219273
Merged-chr17-34934415-2	chr17	34934315	34934515	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_010893, exon 5 of 6)	exon (NM_010893, exon 5 of 6)	3162.0	NM_010893	18010.0	Mm.8856	NM_010893	ENSMUSG00000007038	Neu1	AA407268|AA407316|Aglp|Apl|Bat-7|Bat7|G9|Map-2|Neu|Neu-1	neuraminidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-44380715-4	chr10	44380639	44380839	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21063.0	NR_035450	100316688.0		NR_035450	ENSMUSG00000089260	Mir1929	mir-1929|mmu-mir-1929	microRNA 1929	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-74530717-2	chr17	74530617	74530817	+	696.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007566, intron 1 of 72)	B3A|SINE|B2	2422.0	NM_007566	12211.0	Mm.442564	NM_007566	ENSMUSG00000024073	Birc6	A430032G04Rik|A430040A19Rik|AA501170|Bruce|D630005A10Rik|mKIAA1289	baculoviral IAP repeat-containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-68693112-2	chr3	68693012	68693212	+	665.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008351, intron 2 of 6)	B3|SINE|B2	1688.0	NM_008351	16159.0	Mm.103783	NM_008351	ENSMUSG00000027776	Il12a	IL-12p35|Il-12a|Ll12a|p35	interleukin 12a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-148989463-14	chr3	148989242	148989442	+	905.031616	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-34707.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-105700971-2	chr4	105700871	105701071	+	551.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-540242.0	NR_151521	105244641.0	Mm.404914	NR_151521		Gm12724	-	predicted gene 12724	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-35039319-6	chr9	35039102	35039302	+	998.1904910000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-77526.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-3907132-2	chr16	3907032	3907232	+	634.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_028484, exon 2 of 3)	exon (NM_028484, exon 2 of 3)	1521.0	NR_153801	105246059.0		NR_153801		Gm41410	-	predicted gene, 41410	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-11352140-3	chr16	11352018	11352218	+	861.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028964, intron 3 of 20)	intron (NM_028964, intron 3 of 20)	29214.0	NM_028964	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-36330829-4	chr3	36330726	36330926	+	999.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1C|Other|Other	-108551.0	NM_198192	229214.0	Mm.330975	NM_198192	ENSMUSG00000058400	Qrfpr	AQ27|Gpr103|SP9155	pyroglutamylated RFamide peptide receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44928181-2	chr7	44928081	44928281	+	554.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077264, intron 1 of 22)	intron (NM_001077264, intron 1 of 22)	1309.0	NM_007458	11771.0	Mm.6877	NM_007458	ENSMUSG00000060279	Ap2a1	Adtaa	adaptor-related protein complex 2, alpha 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-94512461-4	chr9	94512377	94512577	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25604.0	NM_001033145	68861.0	Mm.258746	NM_001033145	ENSMUSG00000045414	1190002N15Rik	GoPro49|HASF	RIKEN cDNA 1190002N15 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-93543892-4	chr16	93543776	93543976	+	815.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	59939.0	NM_145482	224440.0	Mm.10628	NM_145482	ENSMUSG00000022948	Setd4	AY037804|C21orf18|ORF21	SET domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-73005312-3	chr17	73005201	73005401	+	676.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	86996.0	NM_029999	77889.0	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-32277009-4	chr19	32276888	32277088	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168525, intron 2 of 9)	intron (NM_001168525, intron 2 of 9)	-65975.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-54914650-4	chr1	54914551	54914751	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081433, intron 1 of 27)	intron (NM_001081433, intron 1 of 27)	11736.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-8280167-2	chr15	8280067	8280267	+	601.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	111061.0	NM_001162906	73692.0	Mm.164436	NM_001162906	ENSMUSG00000039801	2410089E03Rik	4732468D17Rik|Hug|Jbts17|b2b012Clo	RIKEN cDNA 2410089E03 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-98302250-2	chr6	98302150	98302350	+	815.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001128092, intron 2 of 3)	MTC|LTR|ERVL-MaLR	40504.0	NM_001128092	330390.0	Mm.484161	NM_001128092	ENSMUSG00000090667	Gm765	-	predicted gene 765	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-25108940-4	chr8	25108855	25109055	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155282, intron 1 of 1)	intron (NR_155282, intron 1 of 1)	6776.0	NR_155282	74744.0	Mm.117802	NR_155282		5830408C22Rik	2700026D01Rik	RIKEN cDNA 5830408C22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-95941901-2	chr15	95941801	95942001	+	606.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 11 of 19)	intron (NM_175344, intron 11 of 19)	-111829.0	NR_155276	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41796965-3	chr19	41796868	41797068	+	736.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027667, intron 1 of 11)	intron (NM_027667, intron 1 of 11)	5116.0	NM_001163495	71085.0	Mm.21646	NM_027667	ENSMUSG00000025154	Arhgap19	4933411B03Rik|AI120128|AW546831|mFLJ00368	Rho GTPase activating protein 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-53509318-4	chr10	53509213	53509413	+	996.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_037973, intron 3 of 3)	intron (NR_037973, intron 3 of 3)	9676.0	NR_037973	100502868.0	Mm.297722	NR_037973	ENSMUSG00000112739	Gm20597	B230314j19	predicted gene, 20597	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128752825-2	chr2	128752725	128752925	+	743.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 6 of 18)	intron (NM_008587, intron 6 of 18)	53910.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-132010350-2	chr1	132010250	132010450	+	762.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007923, intron 1 of 4)	B2_Mm1a|SINE|B2	2745.0	NM_007923	13714.0	Mm.254233	NM_007923	ENSMUSG00000026436	Elk4	2310011G17Rik|A130026I01Rik|BB162516|SAP-1|Sap1	ELK4, member of ETS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-22003083-4	chr6	22002994	22003194	+	989.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081351, intron 1 of 21)	intron (NM_001081351, intron 1 of 21)	17184.0	NM_001081351	214642.0	Mm.221404	NM_001081351	ENSMUSG00000062980	Cped1	6720481P07|A430107O13Rik|AI552584	cadherin-like and PC-esterase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-30318595-2	chr6	30318495	30318695	+	701.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-14056.0	NM_001169576	22214.0	Mm.332967	NM_009459	ENSMUSG00000039159	Ube2h	1500009C23Rik|AI181839|AI326965|AI462483|AW227540|E2-20K|Gid3|N28148|Ubc8	ubiquitin-conjugating enzyme E2H	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116419346-3	chr11	116419206	116419406	+	702.208313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6274.0	NM_027258	217340.0	Mm.426344	NM_027258	ENSMUSG00000052949	Rnf157	2610036E23Rik|A130073L17Rik|mKIAA1917	ring finger protein 157	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-29732886-2	chr10	29732786	29732986	+	736.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-197019.0	NM_028351	72780.0	Mm.45191	NM_028351	ENSMUSG00000019880	Rspo3	2810459H04Rik|AW742308|Cristin1|Thsd2	R-spondin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-127624644-1	chr5	127624544	127624744	+	726.666687	f0_balb.idr	Intergenic	B3A|SINE|B2	-7252.0	NM_133895	100561.0	Mm.28506	NM_133895	ENSMUSG00000029416	Slc15a4	AA987064|AW742963|C130069N12Rik|PHT1|PTR4	solute carrier family 15, member 4	protein-coding	2.18803629427772	1.41397124457019	1.58370568459668	1.0759600384059	2.85898905601978	1.13890284927153	1.93882295254892	2.72127783575967	1.68859600341907	0.127692402657449	0.559030175729842
Merged-chr12-112840366-4	chr12	112840289	112840489	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10868.0	NM_001359234	71963.0	Mm.313185	NM_028023	ENSMUSG00000047832	Cdca4	2410018C03Rik|HEPP|SEI-3	cell division cycle associated 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-110681934-2	chr9	110681834	110682034	+	877.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028312, intron 1 of 6)	intron (NM_028312, intron 1 of 6)	25431.0	NM_028312	72654.0	Mm.249115	NM_028312	ENSMUSG00000019659	Ccdc12	2700094L05Rik|C76605	coiled-coil domain containing 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-5374738-2	chr12	5374638	5374838	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164493, intron 1 of 13)	CpG	944.0	NM_001164493	208439.0	Mm.388281	NM_001164493	ENSMUSG00000020627	Klhl29	A230106N14Rik|Gm68|Kbtbd9|mKIAA1921	kelch-like 29	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-165734491-4	chr1	165734382	165734582	+	965.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR19-int|LTR|ERVK	-26388.0	NM_178593	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-134582701-4	chr5	134582616	134582816	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020022)	promoter-TSS (NM_020022)	26.0	NM_020022	19718.0	Mm.332739	NM_020022	ENSMUSG00000023104	Rfc2	2610008M13Rik|40kDa|AI326953|Recc2	replication factor C (activator 1) 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-54899103-2	chr18	54899003	54899203	+	828.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_175751, exon 5 of 10)	exon (NM_175751, exon 5 of 10)	91077.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91640384-4	chr16	91640299	91640499	+	841.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357351, intron 4 of 21)	intron (NM_001357351, intron 4 of 21)	6573.0	NM_010256	14450.0	Mm.4505	NM_010256	ENSMUSG00000022962	Gart	Gaps|Prgs	phosphoribosylglycinamide formyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-79895302-4	chr15	79895213	79895413	+	916.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347041, intron 1 of 7)	intron (NM_001347041, intron 1 of 7)	290.0	NM_001347041	80287.0	Mm.284059	NM_030255	ENSMUSG00000009585	Apobec3	Apobec|Arp3|BC003314|Cem15|Gm20117|Rfv3	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 3	protein-coding	5.23446512886799	4.53214178552533	4.70125883118873	4.66757524174811	5.36303118244174	4.37022507598444	4.6874071166802	5.88183110421459	0.467920848050958	0.227821246568934	0.72106957756012
Merged-chr9-59548055-4	chr9	59547929	59548129	+	875.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010421, intron 1 of 13)	L2c|LINE|L2	8489.0	NM_010421	15211.0	Mm.2284	NM_010421	ENSMUSG00000025232	Hexa	Hex-1	hexosaminidase A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-137032857-4	chr5	137032767	137032967	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001039385, exon 2 of 2)	3' UTR (NM_001039385, exon 2 of 2)	2572.0	NM_001039385	381677.0	Mm.389697	NM_001039385	ENSMUSG00000037428	Vgf	Gm1052	VGF nerve growth factor inducible	protein-coding	4.41293542390058	3.48442634319699	4.53419895114469	3.93072168714429	3.997010010687	4.20852839201893	5.05183688587494	3.47857935481122	0.197177030306159	0.686759501295487	0.996533206832645
Merged-chr9-43339846-1	chr9	43339746	43339946	+	951.0	f1_balb.idr	Intergenic	Intergenic	29083.0	NM_023655	72169.0	Mm.273277	NM_023655	ENSMUSG00000032013	Trim29	1110047J21Rik|2810431N19Rik|4732461M22Rik|AI119726	tripartite motif-containing 29	protein-coding	3.56543760464475	3.48657182431714	2.20402537298158	3.43082865747579	4.04101476293567	3.22275531387914	2.59400542397292	3.11574693873696	0.139085106674665	0.832477942364496	0.998431161219273
Merged-chr1-155817766-1	chr1	155817666	155817866	+	906.6666869999999	f0_balb.idr	Intergenic	Intergenic	-4867.0	NM_001024945	104009.0	Mm.27035	NM_023268	ENSMUSG00000033684	Qsox1	1300003H02Rik|QSOX|Qscn6|SOx|b2b2673Clo	quiescin Q6 sulfhydryl oxidase 1	protein-coding	-1.05877568042897	-1.03501312238488	-1.04817210678232	-1.05426068996071	-1.05810152525527	-1.03216151557194	-0.188696606725984	-1.05378786495764	3.16074139804981	0.330468818528456	1
Merged-chr19-6304936-4	chr19	6304863	6305063	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1494.0	NM_001033342	240505.0	Mm.329622	NM_001033342	ENSMUSG00000024769	Cdc42bpg	BC046418|MRCKgamma	CDC42 binding protein kinase gamma (DMPK-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-175142005-4	chr2	175141867	175142067	+	917.366699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	64950.0	NM_001164689	626832.0	Mm.441314	NM_001164689	ENSMUSG00000078887	Gm6710	1600017I02Rik|2310011F05Rik|2900089K14Rik|3100002L24Rik|WF-4	predicted gene 6710	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-109115132-2	chr4	109115032	109115232	+	610.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355190, intron 2 of 21)	RMER10A|LTR|ERVL	2904.0	NM_173350	100273.0	Mm.366315	NM_133885	ENSMUSG00000028559	Osbpl9	2600011I06Rik|AU015843|Orp-9	oxysterol binding protein-like 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-97283022-4	chr10	97282921	97283121	+	956.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER121|DNA|TcMar?	-140457.0	NR_039547	100628616.0		NR_039547	ENSMUSG00000105557	Mir3966	mmu-mir-3966|mu-mir-3966	microRNA 3966	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80166647-2	chr10	80166547	80166747	+	937.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 1 of 4)	B3|SINE|B2	-1192.0	NM_007705	12696.0	Mm.17898	NM_007705	ENSMUSG00000045193	Cirbp	Cirp|R74941	cold inducible RNA binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-105735430-5	chr7	105735263	105735463	+	856.033325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133951, intron 1 of 6)	intron (NM_133951, intron 1 of 6)	1221.0	NM_025897	101867.0	Mm.231400	NM_025897	ENSMUSG00000030888	Rrp8	1500003O22Rik|2900001K19Rik|AW538116	ribosomal RNA processing 8, methyltransferase, homolog (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85818599-4	chr12	85818482	85818682	+	932.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001360813)	TTS (NM_001360813)	6311.0	NM_001360451	58520.0	Mm.143795	NM_021446	ENSMUSG00000021252	Erg28	0610007P14Rik|1190004E09Rik|AU019315|C77855|ORF11	ergosterol biosynthesis 28	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-5186496-2	chr18	5186396	5186596	+	583.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20765.0	NR_153824	102637682.0	Mm.451914	NR_153824		Gm26682	Gm38715	predicted gene, 26682	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-6106464-4	chr17	6106365	6106565	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001103181)	promoter-TSS (NM_001103181)	-365.0	NM_001103181	68842.0	Mm.449307	NM_054040	ENSMUSG00000034377	Tulp4	1110057P05Rik|2210038L17Rik|Tusp	tubby like protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89520085-4	chr3	89519968	89520168	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080466)	promoter-TSS (NM_080466)	-96.0	NM_080466	140493.0	Mm.120250	NM_080466	ENSMUSG00000000794	Kcnn3	KCa2.3|SK3|SKCA3	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-181291166-4	chr2	181291022	181291222	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-3156.0	NM_198169	229004.0	Mm.220423	NM_198169	ENSMUSG00000038705	Gmeb2	AI839884	glucocorticoid modulatory element binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-51566860-2	chr3	51566760	51566960	+	616.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033624, exon 5 of 5)	non-coding (NR_033624, exon 5 of 5)	-6037.0	NM_080793	73251.0	Mm.192111	NM_080793	ENSMUSG00000037111	Setd7	1600028F23Rik|H3K4MT|KMT7|Set7|Set7/9|mKIAA1717	SET domain containing (lysine methyltransferase) 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10896022-3	chr19	10895900	10896100	+	695.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134129, intron 1 of 15)	intron (NM_134129, intron 1 of 15)	769.0	NM_001253843	28000.0	Mm.491104	NM_134129	ENSMUSG00000024735	Prpf19	AA617263|AL024362|D19Wsu55e|NMP200|PSO4|Prp19|Snev	pre-mRNA processing factor 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-72157889-2	chr16	72157789	72157989	+	704.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6C|LTR|ERVK	76438.0	NR_131116	319533.0	Mm.373754	NR_131115		8030451O07Rik	-	RIKEN cDNA 8030451O07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-11447846-2	chr8	11447746	11447946	+	578.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009932, intron 47 of 47)	ID_B1|SINE|B4	-30083.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19276979-4	chr7	19276877	19277077	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177691, exon 5 of 5)	3' UTR (NM_177691, exon 5 of 5)	3072.0	NM_177691	232941.0	Mm.134068	NM_177691	ENSMUSG00000030402	Ppm1n	A930002H20|C79127	protein phosphatase, Mg2+/Mn2+ dependent, 1N (putative)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-88111597-2	chr17	88111497	88111697	+	606.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(A)n|Simple_repeat|Simple_repeat	-13915.0	NM_001190356	225058.0	Mm.312053	NM_001190356		Gm4832	EG225058	predicted gene 4832	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-26560868-2	chr2	26560768	26560968	+	599.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20188.0	NM_178444	353156.0	Mm.268933	NM_178444	ENSMUSG00000026921	Egfl7	VE-statin|Zneu1	EGF-like domain 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55724570-4	chr14	55724493	55724693	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2330.0	NM_001360387	56187.0	Mm.87216	NM_019519	ENSMUSG00000040472	Rabggta	gm	Rab geranylgeranyl transferase, a subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-119131312-1	chr4	119131212	119131412	+	1000.0	f0_balb.idr	intron (NM_011400, intron 2 of 9)	intron (NM_011400, intron 2 of 9)	22567.0	NM_011400	20525.0	Mm.21002	NM_011400	ENSMUSG00000028645	Slc2a1	Glut-1|Glut1	solute carrier family 2 (facilitated glucose transporter), member 1	protein-coding	0.176789075610646	0.274690390940372	-0.0626586416446643	-0.0661029932347866	-0.0709488139257233	0.281790535899656	-0.0616716816511759	0.440779097759059	0.674940279906825	0.756713843917597	1
Merged-chr3-94758144-3	chr3	94758038	94758238	+	849.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	28377.0	NM_001293727	70737.0	Mm.87634	NM_001037711	ENSMUSG00000068876	Cgn	6330408J11Rik	cingulin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119050622-2	chr11	119050522	119050722	+	792.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9709.0	NM_013926	30951.0	Mm.99953	NM_013926	ENSMUSG00000025578	Cbx8	Pc3	chromobox 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-99484404-4	chr4	99484301	99484501	+	675.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-171898.0	NM_010425	15221.0	Mm.4758	NM_010425	ENSMUSG00000067261	Foxd3	CWH3|Genesis|Hfh2	forkhead box D3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-104111969-3	chr8	104111894	104112094	+	802.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009868, intron 1 of 11)	B3|SINE|B2	-6121.0	NR_131138	546096.0	Mm.252264	NR_131138	ENSMUSG00000110053	Gm29682	Gm45664	predicted gene, 29682	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-67672845-4	chr7	67672738	67672938	+	832.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001168477)	TTS (NM_001168477)	25428.0	NM_001360653	67009.0	Mm.249356	NM_025905	ENSMUSG00000030555	Ttc23	1600012K10Rik	tetratricopeptide repeat domain 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-23968868-2	chr17	23968751	23968951	+	840.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6379.0	NM_013921	30943.0	Mm.142568	NM_013921	ENSMUSG00000024124	Prss30	2010015P21Rik|Disp|Disp1|Tmprss8	protease, serine 30	protein-coding	1.50883425080184	1.82781433950068	1.88366859307009	1.93144008328757	2.1590736639676	1.09787050220298	1.48644415577053	1.27131524668751	-0.624966626836087	0.579066025045052	0.965985075107763
Merged-chr6-50385686-4	chr6	50385582	50385782	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163645, intron 2 of 21)	intron (NM_001163645, intron 2 of 21)	-2845.0	NM_027881	71720.0	Mm.44153	NM_027881	ENSMUSG00000029822	Osbpl3	1200014M06Rik|6720421I08Rik|A530055M08|ORP-3|ORP3|OSBP3	oxysterol binding protein-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-17461909-2	chr16	17461809	17462009	+	770.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001277231, intron 1 of 1)	ORR1D2|LTR|ERVL-MaLR	9924.0	NM_007764	12929.0	Mm.21048	NM_007764	ENSMUSG00000006134	Crkl	1110025F07Rik|AA589403|AI325100|Crkol	v-crk avian sarcoma virus CT10 oncogene homolog-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-86697046-4	chr4	86696952	86697152	+	859.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26993.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-23706991-1	chr13	23706891	23707091	+	676.0	f1_c57bl6.idr	exon (NM_010424, exon 3 of 6)	exon (NM_010424, exon 3 of 6)	3863.0	NM_001347493	15216.0	Mm.2681	NM_010424	ENSMUSG00000006611	Hfe	MR2	hemochromatosis	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-50236339-2	chr17	50236239	50236439	+	546.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2869.0	NR_131975	446210.0	Mm.378184	NM_001004437	ENSMUSG00000067103	AY702103	STDP2	cDNA sequence AY702103	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-64078551-4	chr1	64078450	64078650	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033563, intron 2 of 3)	intron (NM_033563, intron 2 of 3)	-36049.0	NR_105864	102466760.0		NR_105864	ENSMUSG00000098487	Mir6899	Gm27384|mmu-mir-6899	microRNA 6899	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111406881-2	chr12	111406781	111406981	+	705.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001101503)	promoter-TSS (NM_001101503)	72.0	NM_001358956	380787.0	Mm.125602	NM_001101503	ENSMUSG00000087075	Lbhd2	A230065H16Rik|Gm898|Lbh2	LBH domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-86615859-2	chr11	86615759	86615959	+	989.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356531, intron 7 of 11)	RMER1B|Other|Other	-31701.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-41761968-2	chr6	41761868	41762068	+	671.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10329.0	NM_146576	258569.0	Mm.377571	NM_146576	ENSMUSG00000045479	Olfr459	MOR120-1	olfactory receptor 459	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-86937977-4	chr17	86937872	86938072	+	999.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9915.0	NM_029121	74915.0	Mm.159369	NM_029121	ENSMUSG00000053375	Atp6v1e2	4930500C14Rik|Atp6e1|E1	ATPase, H+ transporting, lysosomal V1 subunit E2	protein-coding	2.78604724092642	2.52602224439803	2.81813855912388	3.23863665577068	2.89055394674169	3.13766280069519	2.30247479822139	2.8545130661453	-0.0787288623184205	0.9087577268638	0.998431161219273
Merged-chr17-29099224-3	chr17	29099120	29099320	+	661.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111099, intron 2 of 2)	intron (NM_001111099, intron 2 of 2)	5451.0	NM_007669	12575.0	Mm.195663	NM_007669	ENSMUSG00000023067	Cdkn1a	CAP20|CDKI|CIP1|Cdkn1|P21|SDI1|Waf1|mda6|p21Cip1|p21WAF	cyclin-dependent kinase inhibitor 1A (P21)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-14506908-3	chr19	14506806	14507006	+	700.155579	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302951, intron 8 of 19)	intron (NM_001302951, intron 8 of 19)	-68400.0	NR_003027	19862.0		NR_003027	ENSMUSG00000095132	Rnu6	-	U6 small nuclear RNA	snRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-57995984-4	chr1	57995878	57996078	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199007)	promoter-TSS (NM_199007)	4.0	NM_199007	68549.0	Mm.32800	NM_199007	ENSMUSG00000026039	Sgo2a	1110007N04Rik|4932411A20Rik|5730576N04Rik|AU018846|AV008062|D1Ertd8e|Sgol2|Sgol2a|Tripin	shugoshin 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122054658-4	chr5	122054558	122054758	+	998.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR33|LTR|ERVL	-4807.0	NM_001312908	13048.0	Mm.156172	NM_007804	ENSMUSG00000042589	Cux2	1700051K22Rik|Cutl2|Cux-2	cut-like homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70942205-1	chr8	70942105	70942305	+	629.0	f0_balb.idr	Intergenic	RMER19C|LTR|ERVK	10890.0	NM_001357655	665828.0	Mm.482151	NM_001357655	ENSMUSG00000074252	Gm10654	EG665828	predicted gene 10654	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-64324194-4	chr1	64324104	64324304	+	950.787476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-202815.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-172376442-4	chr1	172376326	172376526	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026234)	promoter-TSS (NM_026234)	-105.0	NM_026234	67556.0	Mm.26612	NM_026234	ENSMUSG00000050229	Pigm	4933437L05Rik|AI644422|AV302080|C920011G20Rik	phosphatidylinositol glycan anchor biosynthesis, class M	protein-coding	7.13029690118451	6.97445809564564	7.36920745139531	7.60354604147741	7.390006996743	7.21085285683978	6.98250971986918	7.13820339167706	-0.105489880660816	0.552012810533722	0.95940318976411
Merged-chr8-115616281-2	chr8	115616181	115616381	+	781.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	90613.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-12037918-2	chr15	12037818	12038018	+	750.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-41911.0	NM_011294	20024.0	Mm.41746	NM_011294	ENSMUSG00000022205	Sub1	AI842364|P15|P9|Pc4|Rpo2tc1	SUB1 homolog (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64392669-4	chr5	64392590	64392790	+	982.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	75252.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	4.57586779425001	4.84627870402326	3.47172270471064	3.26609429620698	4.28906666641323	4.87756360360131	2.33224067761311	2.78522556294126	-0.336272461095381	0.602844133302824	0.973565005745828
Merged-chr1-55238000-5	chr1	55237896	55238096	+	854.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175439, exon 1 of 1)	exon (NM_175439, exon 1 of 1)	819.0	NM_175439	212679.0	Mm.19223	NM_175439	ENSMUSG00000046994	Mars2	C730026E21Rik|MetRS	methionine-tRNA synthetase 2 (mitochondrial)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166906412-4	chr2	166906307	166906507	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023565, intron 1 of 24)	CpG	311.0	NM_023565	110750.0	Mm.22417	NM_023565	ENSMUSG00000002718	Cse1l	2610100P18Rik|AA407533|Capts|Cas|Xpo2	chromosome segregation 1-like (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-84809480-2	chr12	84809380	84809580	+	789.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013589, intron 11 of 34)	intron (NM_013589, intron 11 of 34)	36210.0	NM_028863	74316.0	Mm.25719	NM_028863	ENSMUSG00000021241	Isca2	0710001C05Rik|5730594E03Rik|Hbld1	iron-sulfur cluster assembly 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-59633218-3	chr11	59633132	59633332	+	921.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	20266.0	NM_001011740	257886.0	Mm.457883	NM_001011740	ENSMUSG00000044061	Olfr225	MOR256-51	olfactory receptor 225	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-102987085-4	chr4	102986978	102987178	+	904.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163767, intron 1 of 4)	intron (NM_001163767, intron 1 of 4)	699.0	NM_026100	67344.0	Mm.111346	NM_026100	ENSMUSG00000028523	Tctex1d1	1700055O19Rik	Tctex1 domain containing 1	protein-coding	1.97512446921351	1.64831250099917	1.39671049996366	1.71338419808019	1.99224444155242	2.77650511761523	1.9235472344786	1.36937245963374	1.12942426961089	0.266253753940206	0.769151254995423
Merged-chr10-63582798-2	chr10	63582698	63582898	+	914.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164376, intron 5 of 17)	intron (NM_001164376, intron 5 of 17)	125287.0	NM_001164376	216033.0	Mm.444692	NM_177612	ENSMUSG00000060843	Ctnna3	4930429L08Rik|4933408A16|Catna3|Vr22	catenin (cadherin associated protein), alpha 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-84196672-2	chr12	84196572	84196772	+	588.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163501, intron 1 of 12)	intron (NM_001163501, intron 1 of 12)	-2657.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153443951-4	chr2	153443854	153444054	+	869.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001134300, intron 4 of 10)	CpG	525.0	NM_001001986	329540.0	Mm.50600	NM_001001986	ENSMUSG00000061411	Nol4l	4931410H15|8430427H17Rik|AI429157|Gm1636	nucleolar protein 4-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81142719-2	chr10	81142619	81142819	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010731, intron 1 of 2)	intron (NM_010731, intron 1 of 2)	6448.0	NM_010731	16969.0	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116335446-4	chr11	116335339	116335539	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008240)	promoter-TSS (NM_008240)	-85.0	NM_008240	15223.0	Mm.378938	NM_008240	ENSMUSG00000034227	Foxj1	FKHL-13|HFH-4|Hfh4	forkhead box J1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-65824989-2	chr15	65824889	65825089	+	660.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_133766, intron 5 of 22)	intron (NM_133766, intron 5 of 22)	37969.0	NM_001356582	76740.0	Mm.260647	NM_133766	ENSMUSG00000015002	Efr3a	A130089M23Rik|BB071175|C76891|C920006C10Rik|D030063F01Rik|mKIAA0143	EFR3 homolog A	protein-coding	-1.27480050717774	-0.604729833679879	-1.25573295904267	-1.26493563944758	-1.27428069156472	-1.24210192204986	-1.25319678955844	-1.26328836405502	-2.6632876257018	0.439827081912762	1
Merged-chr17-40654016-2	chr17	40653916	40654116	+	919.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur2|LINE|L1	21941.0	NM_001251916	100126766.0	Mm.471591	NM_001251916	ENSMUSG00000093957	Esp3	Gm21945	exocrine gland secreted peptide 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105573578-2	chr8	105573478	105573678	+	789.400024	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271806, intron 1 of 4)	(TC)n|Simple_repeat|Simple_repeat	-5277.0	NM_007427	11604.0	Mm.441696	NM_007427	ENSMUSG00000005705	Agrp	Agrt|Art	agouti related neuropeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-113114941-2	chr12	113114841	113115041	+	634.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346696, intron 2 of 19)	intron (NM_001346696, intron 2 of 19)	16663.0	NM_054081	116870.0	Mm.212577	NM_054081	ENSMUSG00000021144	Mta1	-	metastasis associated 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-25119256-4	chr10	25119153	25119353	+	996.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	80917.0	NM_001347460	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-36067604-1	chr16	36067504	36067704	+	596.0	f0_balb.idr	intron (NM_027342, intron 1 of 4)	B3A|SINE|B2	3911.0	NM_027342	70186.0	Mm.212991	NM_027342	ENSMUSG00000003955	Fam162a	2310056P07Rik|HGTD-P	family with sequence similarity 162, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-104949058-3	chr4	104948954	104949154	+	859.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104376, intron 3 of 20)	intron (NR_104376, intron 3 of 20)	35598.0	NM_001285952	242594.0	Mm.65181	NM_001162980	ENSMUSG00000078612	Fyb2	1700024P16Rik|ARAP|C1orf168|Gm620	FYN binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-68655742-4	chr11	68655660	68655860	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36155.0	NM_175260	77579.0	Mm.218233	NM_175260	ENSMUSG00000020900	Myh10	5730504C04Rik|9330167F11Rik|Fltn|Myhn-2|Myhn2|NMHC II-B|NMHC-B|NMHCII-B|NMMHC II-b|NMMHC-B|NMMHC-IIB|SMemb|mKIAA3005	myosin, heavy polypeptide 10, non-muscle	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44515379-6	chr9	44515265	44515465	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007551, intron 1 of 1)	intron (NM_007551, intron 1 of 1)	11056.0	NM_007551	12145.0	Mm.6246	NM_007551	ENSMUSG00000047880	Cxcr5	Blr1|CXC-R5|CXCR-5|Gpcr6|MDR15	chemokine (C-X-C motif) receptor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30638576-1	chr7	30638476	30638676	+	618.0	f1_c57bl6.idr	Intergenic	B3|SINE|B2	-2724.0	NM_007959	14008.0	Mm.4829	NM_007959	ENSMUSG00000006311	Etv2	Etsrp71	ets variant 2	protein-coding	-1.02623923925007	-0.0785174723847883	-1.01664411116562	-1.02119558009008	-1.02548487198161	-0.999699361692546	-1.0134913975053	-1.0206685408436	-3.25251655617119	0.303463431741018	1
Merged-chr4-156255690-1	chr4	156255590	156255790	+	691.333313	f0_balb.idr	promoter-TSS (NM_001110516)	promoter-TSS (NM_001110516)	-348.0	NM_001110516	231004.0	Mm.406833	NM_173736	ENSMUSG00000096351	Samd11	BC026991|mr-s	sterile alpha motif domain containing 11	protein-coding	1.97139981716971	2.21433611894357	2.77601725259963	1.31406870605193	1.84797237827359	2.49795902432482	2.87640686735213	2.33749706708144	0.580715574284524	0.529933833269198	0.950016854003961
Merged-chr1-84286400-3	chr1	84286301	84286501	+	821.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1756.0	NM_001003948	98496.0	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4|P-CLI1	phosphotyrosine interaction domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-118231167-2	chr14	118231067	118231267	+	828.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5065.0	NR_131969	105245869.0	Mm.460408	NR_131969	ENSMUSG00000090534	LOC105245869	-	uncharacterized LOC105245869	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-100080996-4	chr15	100080879	100081079	+	888.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_037311, intron 3 of 3)	RSINE1|SINE|B4	42315.0	NM_001159361	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-48469191-1	chr17	48469091	48469291	+	737.0	f1_balb.idr	TTS (NM_152823)	TTS (NM_152823)	14290.0	NM_152823	76589.0	Mm.311629	NM_152823	ENSMUSG00000043592	Unc5cl	2510009H09Rik|BB155270|Zud	unc-5 family C-terminal like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-74090481-3	chr13	74090390	74090590	+	937.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28205.0	NM_028959	74470.0	Mm.73234	NM_028959	ENSMUSG00000021572	Cep72	2610029E11Rik|4933440J22Rik	centrosomal protein 72	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-11989517-4	chr19	11989419	11989619	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033174, intron 11 of 13)	intron (NM_001033174, intron 11 of 13)	23675.0	NM_001033174	76303.0	Mm.291279	NM_001033174	ENSMUSG00000024687	Osbp	1110018F06Rik|AW559088|mKIAA4220	oxysterol binding protein	protein-coding	3.8913096212938	3.74404506859467	2.08414233228051	4.23279756750324	3.64124775094116	3.68494470769582	4.46341892874477	3.61218136650426	0.284280619987524	0.628102758704907	0.980912176761026
Merged-chr11-116142113-1	chr11	116142013	116142213	+	552.0	f1_c57bl6.idr	TTS (NM_172571)	TTS (NM_172571)	-3245.0	NM_024177	60441.0	Mm.29974	NM_024177	ENSMUSG00000020775	Mrpl38	1110036N21Rik|4733401F03Rik|MRP-L3|R75240|Rpml3	mitochondrial ribosomal protein L38	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-12251925-4	chr13	12251830	12252030	+	821.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081128, intron 2 of 32)	intron (NM_001081128, intron 2 of 32)	6183.0	NM_001081128	238505.0	Mm.40335	NM_001081128	ENSMUSG00000021311	Mtr	AI894170|D830038K18Rik|MS	5-methyltetrahydrofolate-homocysteine methyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16096436-2	chr7	16096336	16096536	+	778.700012	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001347559)	TTS (NM_001347559)	-2144.0	NM_025898	108124.0	Mm.104540	NM_025898	ENSMUSG00000006024	Napa	1500039N14Rik|AW209189|RA81|SNAP-alpha|SNAPA|SNARE|a-SNAP|hyh	N-ethylmaleimide sensitive fusion protein attachment protein alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-161494534-4	chr1	161494448	161494648	+	923.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183391)	promoter-TSS (NM_183391)	-109.0	NM_183391	240873.0	Mm.276823	NM_183391	ENSMUSG00000066755	Tnfsf18	Gitrl|Tnlg2a	tumor necrosis factor (ligand) superfamily, member 18	protein-coding	3.90665501271689	2.23131134344259	3.9695787476498	2.60247115906338	4.20280478434284	1.99618947925319	3.82751031822199	2.61770647165686	0.0806755988468037	0.914506375426478	0.998431161219273
Merged-chr2-32919795-2	chr2	32919695	32919895	+	955.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_146119, exon 8 of 14)	exon (NM_146119, exon 8 of 14)	41460.0	NM_199302	227738.0	Mm.248037	NM_199302	ENSMUSG00000026792	Lrsam1	-	leucine rich repeat and sterile alpha motif containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88609720-2	chr3	88609620	88609820	+	912.2999880000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F2|SINE|Alu	-6487.0	NM_001198911	16800.0	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	3.21555132343426	2.57656934369005	3.47505541354478	2.55730064570416	3.30355239148345	2.42448769071659	3.50087715919528	2.5707688769857	0.0266489975273268	0.969093218265312	0.998431161219273
Merged-chr6-149357293-4	chr6	149357185	149357385	+	983.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVB3_1-LTR_MM|LTR|ERVK	47871.0	NM_001289662	67246.0	Mm.333515	NM_026054	ENSMUSG00000032712	2810474O19Rik	6720435I21Rik|AA536804|AU020969|GET|Kiaa1551	RIKEN cDNA 2810474O19 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-31618591-2	chr13	31618491	31618691	+	648.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7225.0	NM_010225	14238.0	Mm.125548	NM_010225	ENSMUSG00000038402	Foxf2	FREAC2|Fkh20|LUN	forkhead box F2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-3190110-9	chr11	3190020	3190220	+	962.0184939999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030207, intron 1 of 32)	RLTR33|LTR|ERVK	3343.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-99359436-2	chr5	99359336	99359536	+	669.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-106509.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95681705-2	chr3	95681605	95681805	+	565.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_144899, exon 8 of 18)	exon (NM_144899, exon 8 of 18)	6212.0	NM_144899	229595.0	Mm.490574	NM_144899	ENSMUSG00000015850	Adamtsl4	ADAMTSL-4|Tsrc1	ADAMTS-like 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-84996076-4	chr15	84995992	84996192	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8121.0	NM_001033273	223739.0	Mm.323925	NM_001033273	ENSMUSG00000036046	5031439G07Rik	AW554572|mKIAA0930	RIKEN cDNA 5031439G07 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-8238776-1	chr10	8238676	8238876	+	804.333313	f0_balb.idr	intron (NM_177387, intron 7 of 7)	intron (NM_177387, intron 7 of 7)	280049.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84193676-3	chr8	84193537	84193737	+	811.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14676.0	NR_029821	723819.0		NR_029821	ENSMUSG00000065483	Mir181c	Mirn181c|mir-181c	microRNA 181c	ncRNA	1.38675443847357	1.14666980216556	0.647618513062888	0.632903646026849	0.611374572470421	1.85967363542103	2.11789631607068	0.635504031087625	1.66103349396327	0.279799682445634	0.783093158405392
Merged-chr3-122943770-2	chr3	122943670	122943870	+	762.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_133857, intron 14 of 15)	intron (NM_133857, intron 14 of 15)	19373.0	NM_024461	67704.0	Mm.24219	NM_024461	ENSMUSG00000054091	1810037I17Rik	5730414I01Rik|Aln	RIKEN cDNA 1810037I17 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-165855927-2	chr1	165855827	165856027	+	797.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113391, intron 2 of 7)	intron (NM_001113391, intron 2 of 7)	67246.0	NM_001113392	12503.0	Mm.217308	NM_031162	ENSMUSG00000005763	Cd247	4930549J05Rik|A430104F18Rik|AW552088|Cd3|Cd3-eta|Cd3-zeta|Cd3h|Cd3z|Cd3zeta|T3z|Tcrk|Tcrz	CD247 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-24385047-4	chr7	24384947	24385147	+	888.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008433, exon 9 of 9)	3' UTR (NM_008433, exon 9 of 9)	-14581.0	NM_028047	71997.0	Mm.150977	NM_028047	ENSMUSG00000002210	Smg9	1500002O20Rik|AI429693|N28092	smg-9 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	-0.537382852446384	-0.524074922872398	-0.180496792163893	-0.531781841561794	-0.536548094607104	-0.523097535501982	-0.527460196710144	0.318816864963369	1.67966953440563	0.542482878096213	1
Merged-chr17-56988640-2	chr17	56988540	56988740	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-1624.0	NM_017393	53895.0	Mm.287892	NM_017393	ENSMUSG00000002660	Clpp	AU019820|D17Wsu160e	caseinolytic mitochondrial matrix peptidase proteolytic subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-43764380-2	chr13	43764280	43764480	+	877.583374	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1H|LTR|ERVL-MaLR	-20732.0	NM_009856	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	-0.681483215845423	-0.808778982965691	-0.811569454328099	-0.407429694821291	-0.816712203393355	-0.806136282010663	-0.492845126338777	-0.81333372715168	-0.75046530529284	0.792818351011968	1
Merged-chr1-171453142-4	chr1	171453074	171453274	+	848.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172647, intron 1 of 9)	intron (NM_172647, intron 1 of 9)	15613.0	NM_172647	16456.0	Mm.294882	NM_172647	ENSMUSG00000038235	F11r	9130004G24|AA638916|ESTM33|JAM|JAM-1|JAM-A|Jcam|Jcam1|Ly106	F11 receptor	protein-coding	2.4741193552426	4.19130690831935	2.93119672015139	2.84498471794009	2.22859758692663	2.13802781271471	2.58720439267223	3.21517717101562	-1.15796208334056	0.120884473724641	0.545687322573484
Merged-chr14-14013501-1	chr14	14013401	14013601	+	1000.0	f0_c57.idr	intron (NM_139227, intron 2 of 11)	CpG	1010.0	NM_139227	246103.0	Mm.133625	NM_139227	ENSMUSG00000021738	Atxn7	A430107N12Rik|AI627028|Sca7|ataxin-7	ataxin 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-28929348-4	chr6	28929262	28929462	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-93257.0	NR_029567	387237.0		NR_029567	ENSMUSG00000065469	Mir129-1	Mirn129-1|Mirn129b|miR-129b|mir-129-1	microRNA 129-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-128491400-4	chr8	128491298	128491498	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358959, intron 12 of 16)	intron (NM_001358959, intron 12 of 16)	132157.0	NR_035436	100316680.0		NR_035436	ENSMUSG00000084523	Mir1903	Mirn1903|mmu-mir-1903	microRNA 1903	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-125286416-4	chr8	125286336	125286536	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	206397.0	NM_001081337	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	6.41269071147197	5.89287822278606	5.59250310024106	6.9949622794162	6.45209321522803	5.84999550068512	5.73806840318792	6.43395388005661	-0.185792040251359	0.531127540841966	0.950654387632934
Merged-chr6-39419171-2	chr6	39419071	39419271	+	757.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_018810, intron 1 of 7)	intron (NM_018810, intron 1 of 7)	605.0	NM_001311109	54484.0	Mm.270484	NM_018810	ENSMUSG00000029922	Mkrn1	RFP	makorin, ring finger protein, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-85961856-7	chr6	85961743	85961943	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028099)	promoter-TSS (NM_028099)	-176.0	NM_028099	72102.0	Mm.24007	NM_028099	ENSMUSG00000030002	Dusp11	2010300F21Rik|AI481497	dual specificity phosphatase 11 (RNA/RNP complex 1-interacting)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-84113815-2	chr12	84113715	84113915	+	904.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346528)	promoter-TSS (NM_001346528)	-513.0	NM_028821	105000.0	Mm.101525	NM_028821	ENSMUSG00000042523	Dnal1	1700010H15Rik|AW121714|Dnalc1|E330027P08Rik	dynein, axonemal, light chain 1	protein-coding	-1.84446540621454	-1.66703209084435	-1.82297003008319	-1.83062437091832	-1.84230234211872	-1.6650127732569	-1.82086056797065	-1.82925424756847	0.037684011990387	0.991491645451152	1
Merged-chr7-126729050-2	chr7	126728950	126729150	+	982.083374	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A1|LTR|ERVL-MaLR	-24234.0	NM_009898	12721.0	Mm.290482	NM_009898	ENSMUSG00000030707	Coro1a	Clabp|Lmb3|TACO|p57	coronin, actin binding protein 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-116601145-3	chr3	116601047	116601247	+	664.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030016, intron 1 of 11)	intron (NM_030016, intron 1 of 11)	6189.0	NM_001289571	72776.0	Mm.440836	NM_028349	ENSMUSG00000027959	Sass6	2810453L12Rik	SAS-6 centriolar assembly protein	protein-coding	0.769351789364176	0.813472187812895	1.57637490281856	1.15016225639499	1.54154485219081	0.81662952787762	1.69500976745965	1.5337657719499	1.20074477810929	0.399135986136393	0.885176145862419
Merged-chr11-105562657-3	chr11	105562560	105562760	+	705.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27326.0	NM_181071	77097.0	Mm.22501	NM_175492	ENSMUSG00000053580	Tanc2	3526402J09Rik|5730590C14Rik	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-55892488-4	chr13	55892382	55892582	+	990.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61057.0	NM_011097	18740.0	Mm.135195	NM_011097	ENSMUSG00000021506	Pitx1	Bft|P-OTX|Potx|Ptx1	paired-like homeodomain transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3866110-2	chr12	3865976	3866176	+	721.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001271753, exon 4 of 23)	exon (NM_001271753, exon 4 of 23)	-3832.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-73488184-2	chr2	73488084	73488284	+	681.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	-2431.0	NM_001289723	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-114414671-2	chr7	114414571	114414771	+	899.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011055)	promoter-TSS (NM_011055)	490.0	NR_029437	71045.0	Mm.235682	NR_029437	ENSMUSG00000087475	4933406I18Rik	4933403D24Rik	RIKEN cDNA 4933406I18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-11270814-4	chr16	11270699	11270899	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-16354.0	NR_035466	100316833.0		NR_035466	ENSMUSG00000088544	Mir1945	mir-1945|mmu-mir-1945	microRNA 1945	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-15981759-2	chr7	15981659	15981859	+	613.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081418, intron 6 of 13)	intron (NM_001081418, intron 6 of 13)	-14224.0	NM_153068	259300.0	Mm.138215	NM_153068	ENSMUSG00000074364	Ehd2	BC027084|C130052H20Rik	EH-domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25789505-4	chr7	25789391	25789591	+	845.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001190974)	promoter-TSS (NM_001190974)	-758.0	NM_001190975	26362.0	Mm.4128	NM_009465	ENSMUSG00000002602	Axl	AI323647|Ark|Tyro7|Ufo	AXL receptor tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-90403802-4	chr15	90403677	90403877	+	916.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50067.0	NR_155426	102640415.0	Mm.394352	NR_155426	ENSMUSG00000116204	Gm36480	-	predicted gene, 36480	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-20043891-1	chr4	20043791	20043991	+	541.0	f1_balb.idr	intron (NM_010281, intron 1 of 8)	RSINE1|SINE|B4	1839.0	NM_010281	14590.0	Mm.20461	NM_010281	ENSMUSG00000073987	Ggh	gamma-GH	gamma-glutamyl hydrolase	protein-coding	-0.0109230889172497	0.0109189370148934	0.842670281650459	-0.00167957803539495	0.157282021294872	0.0125073221508626	0.857206043886893	-0.000713612003973629	0.216911052260246	0.920731219800175	1
Merged-chr13-100744626-4	chr13	100744537	100744737	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001190264)	promoter-TSS (NM_001190264)	22.0	NM_001190264	66128.0	Mm.306173	NM_025369	ENSMUSG00000061474	Mrps36	1110018B13Rik|S36mt	mitochondrial ribosomal protein S36	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-141862968-4	chr3	141862857	141863057	+	810.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355043, intron 6 of 10)	intron (NM_001355043, intron 6 of 10)	68463.0	NM_001355043	12167.0	Mm.39089	NM_007560	ENSMUSG00000052430	Bmpr1b	AI385617|ALK-6|AV355320|Acvrlk6|Alk6|BMPR-1B|BMPR-IB|CFK-43a|SKR6	bone morphogenetic protein receptor, type 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-57928999-2	chr15	57928899	57929099	+	643.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356310, intron 3 of 19)	intron (NM_001356310, intron 3 of 19)	16800.0	NM_001356310	210544.0	Mm.390835	NM_199300	ENSMUSG00000022364	Tbc1d31	4B3|D330013L20Rik|Gm85|Wdr67	TBC1 domain family, member 31	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80747589-4	chr10	80747493	80747693	+	954.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5318.0	NM_007460	11776.0	Mm.27082	NM_007460	ENSMUSG00000020198	Ap3d1	AA407035|Ap3d|Bolvr|mBLVR1|mh|mocha	adaptor-related protein complex 3, delta 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-63143671-2	chr14	63143571	63143771	+	764.625	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007798, exon 10 of 10)	3' UTR (NM_007798, exon 10 of 10)	21209.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-54921776-3	chr11	54921673	54921873	+	805.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271456, intron 12 of 18)	intron (NM_001271456, intron 12 of 18)	18919.0	NM_008161	14778.0	Mm.200916	NM_008161	ENSMUSG00000018339	Gpx3	AA960521|EGPx|GPx|GSHPx-3|GSHPx-P	glutathione peroxidase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32577847-2	chr2	32577747	32577947	+	724.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198191, intron 2 of 9)	intron (NM_198191, intron 2 of 9)	2129.0	NM_198191	227733.0	Mm.78923	NM_198191	ENSMUSG00000046854	Pip5kl1	BC028795	phosphatidylinositol-4-phosphate 5-kinase-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-121461621-4	chr10	121461475	121461675	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138956, intron 1 of 4)	intron (NM_138956, intron 1 of 4)	14675.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	5.61512462035333	5.81591904006833	5.32555457973637	5.01460707661429	6.50437047151962	5.92896611943732	6.57217769692834	6.33539240208455	0.982080499826096	0.000142896287893173	0.00411472718914149
Merged-chr6-29209615-2	chr6	29209515	29209715	+	575.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001302934, intron 2 of 14)	ID_B1|SINE|B4	2682.0	NM_011829	23917.0	Mm.260707	NM_011829	ENSMUSG00000003500	Impdh1	B930086D20Rik|IMPDH-I	inosine monophosphate dehydrogenase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-81041151-4	chr3	81041045	81041245	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019971, intron 1 of 5)	Tigger15a|DNA|TcMar-Tigger	4729.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-92534928-2	chr6	92534828	92535028	+	819.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001134459)	promoter-TSS (NM_001134459)	-67.0	NM_001134459	243548.0	Mm.248820	NM_001081146	ENSMUSG00000030020	Prickle2	6230400G14Rik|6720451F06Rik|mpk2	prickle planar cell polarity protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-108773111-4	chr6	108773086	108773286	+	759.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9873.0	NM_026011	67166.0	Mm.271178	NM_026011	ENSMUSG00000030105	Arl8b	2610313E07Rik|3100002J04Rik|Arl10c|gie1	ADP-ribosylation factor-like 8B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111038460-4	chr12	111038395	111038595	+	848.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1303.0	NM_198023	217864.0	Mm.23808	NM_198023	ENSMUSG00000037896	Rcor1	5730409O11|6720480E22Rik|AU042633|D12Wsu95e|Rocr1|mKIAA0071	REST corepressor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91193358-2	chr2	91193258	91193458	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355279, intron 2 of 9)	intron (NM_001355279, intron 2 of 9)	1677.0	NM_013839	22259.0	Mm.22690	NM_013839	ENSMUSG00000002108	Nr1h3	AU018371|LXR|RLD1|Unr1	nuclear receptor subfamily 1, group H, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-95649033-2	chr11	95648933	95649133	+	675.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17924.0	NM_008831	18673.0	Mm.263862	NM_008831	ENSMUSG00000038845	Phb	Bap32	prohibitin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-23654174-2	chr17	23654074	23654274	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6332.0	NM_153784	212733.0	Mm.59997	NM_153784	ENSMUSG00000043782	Bicdl2	BICDR-2|Ccdc64b	BICD family like cargo adaptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135581721-2	chr5	135581621	135581821	+	551.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	T-rich|Low_complexity|Low_complexity	-8672.0	NM_001356630	56221.0	Mm.31505	NM_019577	ENSMUSG00000004814	Ccl24	CKb-6|MPIF-2|Scya24	chemokine (C-C motif) ligand 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-63129659-4	chr11	63129549	63129749	+	972.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302261, intron 1 of 3)	intron (NM_001302261, intron 1 of 3)	667.0	NM_001302261	18858.0	Mm.1237	NM_008885	ENSMUSG00000018217	Pmp22	22kDa|Gas-3|HNPP|TRE002|Tr|trembler	peripheral myelin protein 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125147010-4	chr6	125146913	125147113	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039669, intron 1 of 9)	intron (NM_001039669, intron 1 of 9)	1789.0	NM_001302779	320678.0	Mm.129415	NM_178787	ENSMUSG00000038271	Iffo1	4733401N06Rik|A930037G23Rik|HOM-TES-103|Iffo	intermediate filament family orphan 1	protein-coding	6.09179615413669	6.09050438246585	6.34163823114334	6.54902087596621	5.85407827411843	6.61162265001423	6.37988108496464	6.07166748510033	-0.0349810254385334	0.881363347297618	0.998431161219273
Merged-chr4-134560836-1	chr4	134560736	134560936	+	567.0	f1_c57bl6.idr	TTS (NM_207237)	TTS (NM_207237)	7015.0	NR_105829	102465216.0		NR_105829	ENSMUSG00000099289	Mir6403	Gm27992|mmu-mir-6403	microRNA 6403	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-86182077-4	chr15	86182036	86182236	+	928.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145475, intron 1 of 12)	intron (NM_145475, intron 1 of 12)	-3592.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-45050325-4	chr14	45050243	45050443	+	967.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	62232.0	NM_008964	19217.0	Mm.4630	NM_008964	ENSMUSG00000037759	Ptger2	EP2|Ptgerep2	prostaglandin E receptor 2 (subtype EP2)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-33939804-1	chr13	33939704	33939904	+	548.0	f1_c57bl6.idr	intron (NR_040707, intron 1 of 4)	MMERVK9E_I-int|LTR|ERVK	-3721.0	NM_001164117	20719.0	Mm.252210	NM_009254	ENSMUSG00000060147	Serpinb6a	4930482L21Rik|D330015H01Rik|PI-6|Serpinb6|Spi3|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 6a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-14135240-4	chr16	14135122	14135322	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081154, intron 13 of 26)	ORR1B2|LTR|ERVL-MaLR	24052.0	NM_001081154	223989.0	Mm.85442	NM_001081154	ENSMUSG00000060657	Marf1	4921513D23Rik|BC031575|C87306|E030019O05|Lkap|mKIAA0430	meiosis regulator and mRNA stability 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-74807186-3	chr13	74807079	74807279	+	929.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301153, intron 1 of 31)	intron (NM_001301153, intron 1 of 31)	781.0	NM_009817	12380.0	Mm.29163	NM_009817	ENSMUSG00000021585	Cast	-	calpastatin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-31737480-2	chr11	31737368	31737568	+	593.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65606.0	NM_001024919	69556.0	Mm.34183	NM_001024919	ENSMUSG00000044502	Bod1	2310022M17Rik|BOD2.1|Fam44b	biorientation of chromosomes in cell division 1	protein-coding	0.149382552560657	-0.377806599971422	-0.381617531282314	-0.384548481665311	-0.388676461454665	-0.187067227369059	0.0658967246934755	-0.384037036306567	0.120796563801204	0.962224166663884	1
Merged-chr10-61097548-1	chr10	61097448	61097648	+	577.0	f1_balb.idr	Intergenic	RMER13A2|LTR|ERVK	8217.0	NM_025273	13180.0	Mm.39473	NM_025273	ENSMUSG00000020098	Pcbd1	Dcoh|Pcbd|Pcd|Phs	pterin 4 alpha carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127674946-4	chr10	127674782	127674982	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-2183.0	NM_173732	210035.0	Mm.251075	NM_173732	ENSMUSG00000040195	Nemp1	Tmem194|Tmem194a	nuclear envelope integral membrane protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127324161-2	chr10	127324061	127324261	+	627.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_146011, intron 1 of 14)	MLTR14|LTR|ERV1	454.0	NM_001359656	216445.0	Mm.227198	NM_146011	ENSMUSG00000040345	Arhgap9	AU043488	Rho GTPase activating protein 9	protein-coding	0.456867715499873	1.60855630864132	0.71718945902844	0.475501699137048	0.459682228801973	1.62536693128889	0.489499912622843	1.16330268884595	0.423783258865277	0.802392218181358	0.998431161219273
Merged-chr1-180944798-4	chr1	180944719	180944919	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144794, intron 1 of 22)	intron (NM_144794, intron 1 of 22)	2301.0	NM_144794	208795.0	Mm.185518	NM_144794	ENSMUSG00000026519	Tmem63a	BC014795|Tmem64a	transmembrane protein 63a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-126412735-4	chr4	126412636	126412836	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153402, intron 2 of 18)	RMER19B|LTR|ERVK	16806.0	NM_153402	214150.0	Mm.440915	NM_153402	ENSMUSG00000028842	Ago3	AW048688|C130014L07Rik|Eif2c3	argonaute RISC catalytic subunit 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-25379107-4	chr14	25379009	25379209	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-80076.0	NM_001310666	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-4351422-3	chr18	4351310	4351510	+	936.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007746, intron 1 of 7)	intron (NM_007746, intron 1 of 7)	1543.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6271051-2	chr19	6270951	6271151	+	732.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5845.0	NM_010119	13660.0	Mm.30169	NM_010119	ENSMUSG00000024772	Ehd1	AA409636|Past1|RME-1	EH-domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-58040267-4	chr4	58040154	58040354	+	954.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31130.0	NM_026132	67402.0	Mm.87357	NM_026132	ENSMUSG00000038709	Txndc8	4930429J24Rik|Sptrx-3|Sptrx3|Trx6	thioredoxin domain containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43555508-1	chr4	43555408	43555608	+	548.0	f1_balb.idr	intron (NM_011602, intron 5 of 56)	intron (NM_011602, intron 5 of 56)	7075.0	NM_011602	21894.0	Mm.208601	NM_011602	ENSMUSG00000028465	Tln1	Tln	talin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-38973390-2	chr6	38973272	38973472	+	555.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 3 of 12)	intron (NM_011539, intron 3 of 12)	54386.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-22752707-4	chr2	22752603	22752803	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21624.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-105055135-4	chr3	105055027	105055227	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1981.0	NM_030249	80281.0	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-22548375-4	chr16	22548287	22548487	+	960.9874880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346673, intron 19 of 23)	intron (NM_001346673, intron 19 of 23)	-16203.0	NR_106170	102465887.0		NR_106170	ENSMUSG00000099071	Mir8095	Gm27566|mmu-mir-8095	microRNA 8095	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85523928-4	chr12	85523825	85524025	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50035.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-53479174-4	chr17	53479108	53479308	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025887)	promoter-TSS (NM_025887)	-26.0	NM_025887	271457.0	Mm.329123	NM_025887	ENSMUSG00000017831	Rab5a	2410015H04Rik|AI663973|AU021172|nnyRab5a	RAB5A, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-108567465-4	chr9	108567356	108567556	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023247)	promoter-TSS (NM_023247)	-114.0	NM_023247	66706.0	Mm.29471	NM_023247	ENSMUSG00000070283	Ndufaf3	4733401H18Rik	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 3	protein-coding	4.80642068878399	4.92415225260665	5.64469039098257	5.19599329819587	4.8083205243873	5.12993845717838	5.19930283039908	4.91642769546684	-0.19185263517523	0.553547263289011	0.959685872563428
Merged-chr6-84019304-4	chr6	84019226	84019426	+	869.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021469)	promoter-TSS (NM_021469)	-60.0	NM_001310152	26903.0	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-105623034-4	chr5	105622978	105623178	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-76891.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-84313237-4	chr3	84313121	84313321	+	976.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC5|LINE|L1	-8446.0	NM_001271726	80890.0	Mm.44876	NM_030706	ENSMUSG00000027993	Trim2	mKIAA0517|narf	tripartite motif-containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91363572-3	chr16	91363520	91363720	+	675.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9163.0	NM_010509	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-64078534-2	chr7	64078434	64078634	+	765.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-75301.0	NM_001039104	17364.0	Mm.38875	NM_018752	ENSMUSG00000030523	Trpm1	4732499L03Rik|AI606771|Ltrpc1|Mlsn1	transient receptor potential cation channel, subfamily M, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-71103086-4	chr1	71102988	71103188	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007525)	promoter-TSS (NM_007525)	-116.0	NM_007525	12021.0	Mm.10764	NM_007525	ENSMUSG00000026196	Bard1	-	BRCA1 associated RING domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-68098313-1	chr10	68098213	68098413	+	970.5	f1_balb.idr	exon (NM_023598, exon 10 of 10)	exon (NM_023598, exon 10 of 10)	118743.0	NM_001359319	170799.0	Mm.209844	NM_133244	ENSMUSG00000037846	Rtkn2	B130039D23Rik|Mbf|Plekhk1	rhotekin 2	protein-coding	-0.884151943040017	-0.86624766296593	-0.874346483115882	-0.877999885265216	-0.883229761593409	-0.862865047594633	0.225856448367219	-0.877358843395171	3.5762970005776	0.2292649794022	1
Merged-chr14-25868974-2	chr14	25868874	25869074	+	629.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013469, intron 2 of 14)	intron (NM_013469, intron 2 of 14)	26819.0	NM_013469	11744.0	Mm.294083	NM_013469	ENSMUSG00000021866	Anxa11	A830099O17Rik|Anx11	annexin A11	protein-coding	-1.69986312423686	-1.81314243252593	-1.82225744210362	-1.82974478236248	-1.84116796638235	-1.66774645889968	-1.82019400373055	-1.82840455203593	0.0376840119903864	0.991491645451152	1
Merged-chr8-24431497-4	chr8	24431411	24431611	+	717.825012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7435.0	NM_026931	69068.0	Mm.25775	NM_026931	ENSMUSG00000056313	Tcim	1110065B09Rik|1810011O10Rik|AW121743|AW321058	transcriptional and immune response regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-26601977-4	chr11	26601856	26602056	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER34A|LTR|ERV1	-8036.0	NM_001252447	69922.0	Mm.285351	NM_027260	ENSMUSG00000064090	Vrk2	2810003O05Rik|AI447698	vaccinia related kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-29486737-4	chr19	29486628	29486828	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35259.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-99120983-4	chr4	99120901	99121101	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290636)	promoter-TSS (NM_001290636)	-86.0	NM_026082	67299.0	Mm.260623	NM_026082	ENSMUSG00000028556	Dock7	3110056M06Rik|Gm430	dedicator of cytokinesis 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-136674196-2	chr3	136674096	136674296	+	969.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008913, intron 1 of 13)	intron (NM_008913, intron 1 of 13)	4130.0	NM_001293622	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-22324870-2	chr9	22324770	22324970	+	641.900024	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	5820.0	NR_033622	625603.0	Mm.37987	NR_033622		Gm6607	EG625603	40S ribosomal protein S20 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-29097149-2	chr17	29097061	29097261	+	684.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007669, intron 1 of 2)	intron (NM_007669, intron 1 of 2)	3392.0	NM_007669	12575.0	Mm.195663	NM_007669	ENSMUSG00000023067	Cdkn1a	CAP20|CDKI|CIP1|Cdkn1|P21|SDI1|Waf1|mda6|p21Cip1|p21WAF	cyclin-dependent kinase inhibitor 1A (P21)	protein-coding	0.136381609128166	-0.218566288903469	-0.223048132622712	-0.226501254400363	0.0360069145424354	-0.21755504193951	-0.222060231391098	0.488115839225169	1.58838917015099	0.511215862333981	1
Merged-chr12-111149713-3	chr12	111149614	111149814	+	685.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16656.0	NM_001286122	22031.0	Mm.27431	NM_011632	ENSMUSG00000021277	Traf3	AI528849|CAP-1|CD40bp|CRAF1|LAP1|T-BAM|amn	TNF receptor-associated factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-14606208-4	chr14	14606100	14606300	+	908.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-96825.0	NM_001360505	218756.0	Mm.258893	NM_001033270	ENSMUSG00000021733	Slc4a7	E430014N10Rik|NBC3|NBCn1|NBCn1-G|Tg(Thy1-SNCA)12Mjff	solute carrier family 4, sodium bicarbonate cotransporter, member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-118567844-4	chr1	118567736	118567936	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359330, intron 33 of 39)	intron (NM_001359330, intron 33 of 39)	-60109.0	NM_023755	81879.0	Mm.24621	NM_023755	ENSMUSG00000026380	Tfcp2l1	1810030F05Rik|4932442M07Rik|AA575098|Cp2l1|Crtr-1|D930018N21Rik|LBP-9|Tcfcp2l1	transcription factor CP2-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-124230646-1	chr8	124230546	124230746	+	986.0	f1_balb.idr	promoter-TSS (NM_139272)	promoter-TSS (NM_139272)	-748.0	NM_139272	108148.0	Mm.33808	NM_139272	ENSMUSG00000089704	Galnt2	AI480629	polypeptide N-acetylgalactosaminyltransferase 2	protein-coding	3.46025345880522	2.88999790349164	1.53639248845695	3.07994136321402	2.4787071331641	3.45672871065612	2.69516865254807	2.48234176198084	-0.141337783305278	0.857877224892927	0.998431161219273
Merged-chr11-117313221-2	chr11	117313121	117313321	+	564.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113486, intron 3 of 11)	intron (NM_001113486, intron 3 of 11)	-18494.0	NM_017380	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-82793802-3	chr10	82793703	82793903	+	931.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16B|LTR|ERVL	-18320.0	NR_038042	70003.0	Mm.48789	NR_038042	ENSMUSG00000056821	1700028I16Rik	-	RIKEN cDNA 1700028I16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-46585177-3	chr4	46585118	46585318	+	815.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164804, intron 1 of 11)	intron (NM_001164804, intron 1 of 11)	16711.0	NM_001164804	107684.0	Mm.416311	NM_178893	ENSMUSG00000028337	Coro2a	9030208C03Rik|AI563590|IR10	coronin, actin binding protein 2A	protein-coding	-0.259803732773196	-0.246379397016487	-0.250784366462968	-0.254178280537129	0.302225138156052	-0.0511580693897862	0.319830559396381	-0.253585660012889	3.73465238258191	0.116069629417522	1
Merged-chr2-32439357-2	chr2	32439257	32439457	+	920.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146118, intron 1 of 10)	intron (NM_146118, intron 1 of 10)	-8206.0	NM_001164358	227731.0	Mm.37395	NM_146118	ENSMUSG00000026819	Slc25a25	1110030N17Rik|MCSC|mKIAA1896	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-53255956-4	chr15	53255850	53256050	+	742.020813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	90233.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91061764-4	chr16	91061670	91061870	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028905, intron 1 of 2)	intron (NM_028905, intron 1 of 2)	7375.0	NM_001163695	74387.0	Mm.236220	NM_028905	ENSMUSG00000039851	4932438H23Rik	4931406G06Rik|AI550392	RIKEN cDNA 4932438H23 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28762086-4	chr17	28761981	28762181	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7236.0	NM_011950	26415.0	Mm.27970	NM_011950	ENSMUSG00000004864	Mapk13	SAPK4|Serk4	mitogen-activated protein kinase 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-123329408-4	chr3	123329311	123329511	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027135, intron 9 of 22)	intron (NM_027135, intron 9 of 22)	56579.0	NM_201638	210529.0	Mm.260039	NM_201638	ENSMUSG00000028114	Mettl14	G430022H21Rik|mKIAA1627	methyltransferase like 14	protein-coding	4.7538445002248	5.58221284065309	6.21815966290535	5.01912597578961	4.75470324686461	4.73865668952716	4.41834392086933	4.22197797485015	-1.13009771311022	0.00296574092645688	0.045041721057759
Merged-chr12-84751454-4	chr12	84751346	84751546	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	21666.0	NM_023409	67963.0	Mm.282556	NM_023409	ENSMUSG00000021242	Npc2	2700012J19Rik|AA408070|AU045843|HE1	NPC intracellular cholesterol transporter 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-112578845-4	chr12	112578769	112578969	+	821.31665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9915.0	NM_198411	70435.0	Mm.250193	NM_198411	ENSMUSG00000037679	Inf2	2610204M08Rik|AA589465|AW125550|EG629699	inverted formin, FH2 and WH2 domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-6525851-2	chr11	6525751	6525951	+	722.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045893, intron 3 of 3)	intron (NR_045893, intron 3 of 3)	2909.0	NR_045893	100041286.0	Mm.459507	NR_045893	ENSMUSG00000085156	Snhg15	Gm11974	small nucleolar RNA host gene 15	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150912972-2	chr4	150912872	150913072	+	835.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3051.0	NM_020569	57320.0	Mm.277349	NM_020569	ENSMUSG00000028964	Park7	DJ-1|Dj1	Parkinson disease (autosomal recessive, early onset) 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-106679838-4	chr5	106679761	106679961	+	921.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026856, intron 1 of 6)	intron (NM_026856, intron 1 of 6)	16969.0	NM_026856	52397.0	Mm.249474	NM_026856	ENSMUSG00000049606	Zfp644	1110068L01Rik|AA408882|BM-005|D5Ertd689e|Zep-2	zinc finger protein 644	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-116657431-2	chr8	116657331	116657531	+	622.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029441, intron 1 of 6)	L1ME1|LINE|L1	75560.0	NM_029441	75796.0	Mm.159575	NM_029441	ENSMUSG00000031758	Cdyl2	1700029M19Rik|4930453I21Rik|Gm20194	chromodomain protein, Y chromosome-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-40755340-4	chr11	40755228	40755428	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009831)	promoter-TSS (NM_009831)	-42.0	NM_009831	12450.0	Mm.2103	NM_009831	ENSMUSG00000020326	Ccng1	AI314029	cyclin G1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-90213703-4	chr3	90213606	90213806	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027015)	promoter-TSS (NM_027015)	-9.0	NM_001293741	68328.0	Mm.29355	NM_026677	ENSMUSG00000027935	Rab13	0610007N03Rik|B230212B15Rik	RAB13, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44512719-2	chr9	44512619	44512819	+	864.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_030256)	TTS (NM_030256)	13583.0	NM_030256	80288.0	Mm.370270	NM_030256	ENSMUSG00000063382	Bcl9l	B9L|BC003321|BCL9-2|DLNB11	B cell CLL/lymphoma 9-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-65786095-4	chr15	65785950	65786150	+	799.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356582)	promoter-TSS (NM_001356582)	-970.0	NM_133766	76740.0	Mm.260647	NM_133766	ENSMUSG00000015002	Efr3a	A130089M23Rik|BB071175|C76891|C920006C10Rik|D030063F01Rik|mKIAA0143	EFR3 homolog A	protein-coding	3.05821449813363	1.50684092930392	2.32375237247593	2.25448501162227	3.66768984236181	3.1394138916765	2.62090514677417	2.26682149217262	1.1611908836926	0.156908395008559	0.613360045340919
Merged-chr7-96213427-3	chr7	96213333	96213533	+	863.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310760, intron 1 of 32)	intron (NM_001310760, intron 1 of 32)	1762.0	NM_001310760	23966.0	Mm.254610	NM_011858	ENSMUSG00000048078	Tenm4	Doc4|ELM2|Odz4|R75022|Ten-m4|l(7)-3Rn|l7Rn3|mKIAA1302	teneurin transmembrane protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118721478-2	chr9	118721378	118721578	+	599.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 1 of 13)	intron (NM_001113514, intron 1 of 13)	9786.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-42139966-3	chr19	42139882	42140082	+	750.972229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-7407.0	NM_183195	277010.0	Mm.206250	NM_183195	ENSMUSG00000044345	Marveld1	AI504298|Mrvldc1	MARVEL (membrane-associating) domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-7870694-4	chr9	7870589	7870789	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007464, intron 1 of 8)	ORR1C2|LTR|ERVL-MaLR	2481.0	NM_007464	11796.0	Mm.2026	NM_007464	ENSMUSG00000032000	Birc3	AW107670|Api1|Api2|Birc2|C-IAP2|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF49|cIAP-1|cIAP-2|cIAP1|cIAP2	baculoviral IAP repeat-containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-102715425-4	chr3	102715276	102715476	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19394.0	NM_027533	70747.0	Mm.27469	NM_027533	ENSMUSG00000027858	Tspan2	6330415F13Rik|B230119D02Rik|tspan-2	tetraspanin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-40551494-4	chr12	40551409	40551609	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	105456.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-39896619-2	chr10	39896519	39896719	+	630.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_033628, intron 1 of 3)	MTC-int|LTR|ERVL-MaLR	2619.0	NR_033628	213332.0	Mm.484359	NR_033628		Mfsd4b4	AA474331	major facilitator superfamily domain containing 4B4	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166073591-1	chr2	166073491	166073691	+	605.0	f1_c57bl6.idr	TTS (NM_028072)	TTS (NM_028072)	80954.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	-0.166530541985169	-0.600160856458528	-0.603267031174828	-0.205484559570547	-0.472474387903552	-0.5994583378596	-0.60258340440784	-0.60523597710851	-2.30861822721674	0.39051577112159	1
Merged-chr11-114673069-2	chr11	114672969	114673169	+	864.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_023372)	TTS (NM_023372)	-2399.0	NM_053273	117160.0	Mm.271934	NM_053273	ENSMUSG00000034714	Ttyh2	1110001A03Rik	tweety family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3779109-2	chr4	3779009	3779209	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 10 of 12)	intron (NM_001111096, intron 10 of 12)	56546.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33561401-2	chr16	33561301	33561501	+	697.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083902, intron 4 of 11)	MIRb|SINE|MIR	42806.0	NM_001083902	171286.0	Mm.35253	NM_134251	ENSMUSG00000035506	Slc12a8	CCC9|E330020C02Rik	solute carrier family 12 (potassium/chloride transporters), member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134517593-1	chr6	134517493	134517693	+	609.0	f0_balb.idr	intron (NM_008514, intron 3 of 22)	L1M4|LINE|L1	49320.0	NM_008514	16974.0	Mm.321990	NM_008514	ENSMUSG00000030201	Lrp6	C030016K15Rik|Cd|Gw|ska26|ska<m26Jus>|skax26	low density lipoprotein receptor-related protein 6	protein-coding	2.120670353045	3.80383335694949	2.19602861141944	1.09014462161748	2.45245607109328	1.96384677892944	1.13497973361649	1.81870528663408	-1.52082386668296	0.14501341477178	0.594909640442646
Merged-chr7-35099695-1	chr7	35099595	35099795	+	738.0	f0_balb.idr	Intergenic	Intergenic	-19598.0	NM_001287521	12606.0	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	0.848660763873534	0.471573567636079	0.462746923076728	0.782163840472427	1.36175110465939	0.473553954573568	1.07888850170671	0.636522795695671	1.52532437540439	0.361759663948599	1
Merged-chr12-3854199-2	chr12	3854099	3854299	+	585.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007872, intron 3 of 22)	B2_Mm2|SINE|B2	8045.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46525615-2	chr19	46525515	46525715	+	642.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23967.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-3562279-2	chr10	3562179	3562379	+	687.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22000.0	NM_027391	70337.0	Mm.24153	NM_027391	ENSMUSG00000019762	Iyd	0610009A07Rik|AI265638|Dehal1	iodotyrosine deiodinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-108457086-2	chr4	108456986	108457186	+	705.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-2340.0	NM_175472	230594.0	Mm.25181	NM_175472	ENSMUSG00000034610	Zcchc11	6030404K05Rik|9230115F04Rik|PPAPD3|mKIAA0191	zinc finger, CCHC domain containing 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-55100088-3	chr11	55099990	55100190	+	916.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010299, intron 1 of 3)	MIRb|SINE|MIR	2105.0	NM_010299	14667.0	Mm.287807	NM_010299	ENSMUSG00000000594	Gm2a	AA408702|AW215435|GM2-AP|SAP-3	GM2 ganglioside activator protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-107456188-2	chr10	107456088	107456288	+	797.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	29946.0	NM_008656	17877.0	Mm.4984	NM_008656	ENSMUSG00000000435	Myf5	B130010J22Rik|Myf-5|bHLHc2	myogenic factor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-20091440-4	chr13	20091373	20091573	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 1 of 21)	CpG	966.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132512481-2	chr4	132512381	132512581	+	882.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2025.0	NM_144907	230784.0	Mm.23608	NM_144907	ENSMUSG00000028893	Sesn2	HI95|SEST2|Ses2	sestrin 2	protein-coding	0.500886798110733	0.342987662117967	1.57694869083005	0.319297826102994	0.507314983525217	0.345922512323228	1.59571716127697	0.321141210717248	0.0410950568014028	0.98141847098692	0.998431161219273
Merged-chr8-88137847-4	chr8	88137749	88137949	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_106039)	promoter-TSS (NR_106039)	-36.0	NM_172757	234549.0	Mm.36291	NM_172757	ENSMUSG00000031657	Heatr3	C030036P15Rik	HEAT repeat containing 3	protein-coding	4.75774399881201	4.2605200154676	4.24361687372514	4.33980108911054	4.60366465677184	3.83409886534413	4.38561354610255	3.17531340667438	-0.404146939078254	0.374197393266863	0.867141279322472
Merged-chr15-62220172-3	chr15	62220069	62220269	+	728.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_003523)	promoter-TSS (NR_003523)	-718.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	1.75897788047525	1.75711776441325	1.56787213653612	1.22157341381656	1.77400720835979	1.77046559210732	1.57974425629918	1.02821955797967	-0.0651592841733056	0.955026762954029	0.998431161219273
Merged-chr8-94371594-4	chr8	94371509	94371709	+	866.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14820.0	NM_001357205	64209.0	Mm.29151	NM_022331	ENSMUSG00000031770	Herpud1	Herp|Mifl|SUP	homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19685507-2	chr7	19685407	19685607	+	971.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4047.0	NM_001309799	105886299.0	Mm.28394	NM_001309799	ENSMUSG00000109350	Gm44805	Apoc4-apoc2	predicted gene 44805	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-35165821-2	chr2	35165721	35165921	+	664.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_012018, exon 33 of 44)	exon (NM_012018, exon 33 of 44)	33587.0	NM_001290635	26920.0	Mm.231332	NM_012018	ENSMUSG00000057110	Cntrl	6720467O09Rik|AA968343|Cep1|Cep110|IB3/5|Ma2a8|b2b1468.1Clo|b2b1468Clo	centriolin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-177981516-4	chr1	177981409	177981609	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-9889.0	NR_155538	545391.0	Mm.442974	NM_001034899	ENSMUSG00000091476	Gm16432	EG545391|EG666250	predicted gene 16432	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55745686-4	chr14	55745585	55745785	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026403)	promoter-TSS (NM_026403)	-1.0	NM_026819	52585.0	Mm.21623	NM_026819	ENSMUSG00000002332	Dhrs1	1110029G07Rik|AW112170|D14Ertd484e	dehydrogenase/reductase (SDR family) member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122281966-4	chr8	122281862	122282062	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009569)	promoter-TSS (NM_009569)	-179.0	NM_009569	22761.0	Mm.3105	NM_009569	ENSMUSG00000049577	Zfpm1	FOG|Fog1	zinc finger protein, multitype 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-43899292-2	chr1	43899192	43899392	+	745.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34702.0	NM_001310540	22019.0	Mm.401675	NM_009418	ENSMUSG00000041763	Tpp2	TPP-2|TppII	tripeptidyl peptidase II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-135175718-2	chr6	135175677	135175877	+	803.0	f0_balb.idr|f1_balb.idr	Intergenic	B1_Mus2|SINE|Alu	-7562.0	NM_013546	15199.0	Mm.378937	NM_013546	ENSMUSG00000042770	Hebp1	Hebp|p22HBP	heme binding protein 1	protein-coding	1.14536295251392	1.5523086059401	1.22786106808006	2.56747521310687	2.15983871307284	3.01599328838436	2.66836391558545	2.5815223545245	1.95109012513355	0.0532073656701925	0.337649139621458
Merged-chr6-124496169-4	chr6	124496057	124496257	+	994.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181344, intron 2 of 5)	HAL1|LINE|L1	3044.0	NM_181344	232371.0	Mm.132974	NM_181344	ENSMUSG00000038527	C1rl	C1r-LP|C1rl1|C1rlp	complement component 1, r subcomponent-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-8320210-4	chr12	8320082	8320282	+	888.033325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021429, intron 2 of 6)	intron (NM_021429, intron 2 of 6)	6749.0	NM_021429	58240.0	Mm.309954	NM_021429	ENSMUSG00000020605	Hs1bp3	-	HCLS1 binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-31731088-3	chr2	31730989	31731189	+	737.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001283047, intron 2 of 11)	intron (NM_001283047, intron 2 of 11)	-28850.0	NM_009594	11350.0	Mm.1318	NM_009594	ENSMUSG00000026842	Abl1	AI325092|Abl|E430008G22Rik|c-Abl	c-abl oncogene 1, non-receptor tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-53706465-4	chr9	53706369	53706569	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175562)	promoter-TSS (NM_175562)	-237.0	NM_175562	270160.0	Mm.290285	NM_175562	ENSMUSG00000055069	Rab39	C230094F14Rik|Rab39a	RAB39, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19841522-4	chr7	19841401	19841601	+	992.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10502.0	NM_001270489	100502736.0	Mm.445354	NM_001270489	ENSMUSG00000092216	Gm19345	-	predicted gene, 19345	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78328747-2	chr15	78328647	78328847	+	645.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358854, intron 2 of 14)	intron (NM_001358854, intron 2 of 14)	2757.0	NM_007780	12983.0	Mm.235324	NM_007780	ENSMUSG00000071713	Csf2rb	AI848964|AIC2B|Bc|CDw131|Csf2rb1|Csfgmrb|Il3r|Il3rb|Il3rb1|Il5rb	colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-29549734-4	chr17	29549633	29549833	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162901)	promoter-TSS (NM_001162901)	-69.0	NM_198647	381085.0	Mm.328934	NM_198647	ENSMUSG00000042203	Tbc1d22b	BC045600	TBC1 domain family, member 22B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-113042067-4	chr12	113041959	113042159	+	891.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081170, intron 1 of 23)	intron (NM_001081170, intron 1 of 23)	27551.0	NM_001291444	217893.0	Mm.35754	NM_198165	ENSMUSG00000021143	Pacs2	6720425G15Rik|AW208651|AW489976|E230011J22|Pacs1l|mKIAA0602	phosphofurin acidic cluster sorting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-31107888-3	chr3	31107791	31107991	+	912.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039090, intron 2 of 6)	intron (NM_001039090, intron 2 of 6)	12833.0	NM_001271772	20482.0	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-35545135-5	chr2	35544999	35545199	+	738.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13359.0	NM_001114125	69601.0	Mm.29629	NM_001001602	ENSMUSG00000026883	Dab2ip	2310011D08Rik|AI480459|Aip1|mKIAA1743	disabled 2 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-54534053-4	chr11	54533951	54534151	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252494, intron 1 of 28)	RLTR14|LTR|ERV1	11206.0	NM_001252496	192786.0	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-64186885-4	chr15	64186798	64186998	+	889.095825	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 5 of 28)	intron (NM_001276461, intron 5 of 28)	125775.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	3.8868447344418	4.14124541176197	4.07392026293229	4.65154105528809	4.43561402576777	4.73323751281698	4.10457401489176	4.04639403309327	0.180380169802035	0.668354338648285	0.99330435992635
Merged-chr4-87759292-4	chr4	87759181	87759381	+	809.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47042.0	NM_001286158	70122.0	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-6602635-4	chr15	6602529	6602729	+	958.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011815, intron 1 of 17)	intron (NM_011815, intron 1 of 17)	22782.0	NM_011815	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-75702893-5	chr7	75702951	75703151	+	761.016663	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 16 of 36)	MIRb|SINE|MIR	-145287.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-123432114-4	chr4	123432005	123432205	+	916.0125119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001199136, exon 57 of 98)	exon (NM_001199136, exon 57 of 98)	-20194.0	NM_001167918	442834.0	Mm.483803	NM_001167918		D830031N03Rik	Kiaa0754|mKIAA0754	RIKEN cDNA D830031N03 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-5790963-1	chr10	5790863	5791063	+	542.0	f1_c57bl6.idr	Intergenic	Intergenic	14502.0	NM_025995	67141.0	Mm.197520	NM_025995	ENSMUSG00000019773	Fbxo5	2510044I10Rik|C85305|Emi1|Fbxo31	F-box protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-133904709-2	chr6	133904613	133904813	+	580.0	f0_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51046.0	NM_010594	16483.0	Mm.13052	NM_010594	ENSMUSG00000032758	Kap	AW146435|FKSG22	kidney androgen regulated protein	protein-coding	-0.195394753743139	1.21821902555544	-0.1763487089785	-0.183400255059642	-0.193586771770925	-0.165399306641661	0.424117330887734	-0.182159236988909	-1.87917852206486	0.41304844836632	1
Merged-chr5-123699393-3	chr5	123699281	123699481	+	857.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_027494, exon 14 of 14)	3' UTR (NM_027494, exon 14 of 14)	-15020.0	NM_001359222	56430.0	Mm.241109	NM_019765	ENSMUSG00000049550	Clip1	1110007I12Rik|4631429H07Rik|AV017631|C81039|CLIP-170|CLIP170|CYLN1|Clip50|Rsn|mKIAA4046|restin	CAP-GLY domain containing linker protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-107028083-4	chr11	107028019	107028219	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163473)	promoter-TSS (NM_001163473)	-104.0	NM_001163473	69066.0	Mm.40679	NM_001163473	ENSMUSG00000078607	1810010H24Rik	-	RIKEN cDNA 1810010H24 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-9716561-2	chr6	9716460	9716660	+	756.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus1|LINE|L1	766541.0	NM_008751	18231.0	Mm.46954	NM_008751	ENSMUSG00000046178	Nxph1	C130005L03Rik	neurexophilin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-77259206-4	chr10	77259108	77259308	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_026944)	promoter-TSS (NR_026944)	15.0	NR_026944	100169878.0	Mm.420901	NR_026944	ENSMUSG00000078444	Gm10941	-	predicted gene 10941	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-73496169-4	chr2	73496066	73496266	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	-10413.0	NM_001289723	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-37174039-2	chr18	37173939	37174139	+	612.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001003672, intron 3 of 3)	Lx4A|LINE|L1	30070.0	NM_001003672	353237.0	Mm.308500	NM_001003672	ENSMUSG00000102697	Pcdhac2	CNRc2	protocadherin alpha subfamily C, 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19333880-2	chr7	19333780	19333980	+	805.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-11191.0	NM_001127324	13870.0	Mm.280913	NM_007948	ENSMUSG00000003549	Ercc1	Ercc-1	excision repair cross-complementing rodent repair deficiency, complementation group 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141024929-4	chr7	141024835	141025035	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8043.0	NM_001033632	213002.0	Mm.276440	NM_001033632	ENSMUSG00000059108	Ifitm6	A330075D07|Dspa2f|Fgls5|fragilis5	interferon induced transmembrane protein 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-108120850-4	chr9	108120747	108120947	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007567, intron 3 of 11)	intron (NM_007567, intron 3 of 11)	-12871.0	NR_126078	76873.0	Mm.436935	NR_126077	ENSMUSG00000102224	4930447F24Rik	-	RIKEN cDNA 4930447F24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-25558129-2	chr8	25558029	25558229	+	640.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_010206, exon 5 of 18)	exon (NM_010206, exon 5 of 18)	-2046.0	NR_110510	102633315.0	Mm.437828	NR_110510	ENSMUSG00000086134	Gm16159	-	predicted gene 16159	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131960564-2	chr1	131960464	131960664	+	707.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2351.0	NM_001177628	212980.0	Mm.200307	NM_145977	ENSMUSG00000026435	Slc45a3	2210413P12Rik|AU023994|AU043764|IPCA-6|PRST|Pcanap6	solute carrier family 45, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-121224532-2	chr3	121224432	121224632	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355678, intron 6 of 7)	intron (NM_001355678, intron 6 of 7)	38627.0	NM_001355678	99887.0	Mm.26088	NM_178936	ENSMUSG00000028132	Tmem56	4930577M16Rik|AU018104|AW109744|C730036B01Rik	transmembrane protein 56	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122130343-2	chr5	122130243	122130443	+	544.5	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001289809, exon 2 of 12)	5' UTR (NM_001289809, exon 2 of 12)	4550.0	NM_001289811	330188.0	Mm.386907	NM_183307	ENSMUSG00000043036	Ccdc63	4921511C16Rik	coiled-coil domain containing 63	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-19162114-3	chr8	19162029	19162229	+	737.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4242.0	NM_153115	78128.0	Mm.229357	NM_153115	ENSMUSG00000079842	Spag11a	9230111C08Rik|Bin1b|EP2Q|EP2e|Spag11	sperm associated antigen 11A	protein-coding	3.55632577020209	2.99345987038869	1.77859846609673	3.07594205292823	2.85908229341361	1.55947989522385	3.60479024441974	2.46560158073394	-0.296431674414447	0.722601499561894	0.998431161219273
Merged-chr16-77002631-3	chr16	77002510	77002710	+	953.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8271.0	NR_040573	76601.0	Mm.396217	NR_040573	ENSMUSG00000100857	1700041M19Rik	-	RIKEN cDNA 1700041M19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123456868-2	chr5	123456768	123456968	+	718.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_133917, exon 17 of 17)	3' UTR (NM_133917, exon 17 of 17)	25233.0	NM_029594	76399.0	Mm.75049	NM_029594	ENSMUSG00000029437	Il31	1700013B14Rik	interleukin 31	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-86671058-3	chr4	86670921	86671121	+	844.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007408)	promoter-TSS (NM_007408)	-962.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	-1.0433167833895	-1.02384614025209	-1.0354241979555	-1.03992149915231	-0.471480376444205	-1.02133712684873	-0.855046535079835	-1.03956363812707	2.84354138876931	0.366125231135294	1
Merged-chr19-55255427-2	chr19	55255327	55255527	+	689.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027976, intron 1 of 21)	intron (NM_027976, intron 1 of 21)	2058.0	NM_027976	433256.0	Mm.292056	NM_027976	ENSMUSG00000024981	Acsl5	1700030F05Rik|ACS2|ACS5|Facl5	acyl-CoA synthetase long-chain family member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-37961132-4	chr15	37961026	37961226	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199476)	promoter-TSS (NM_199476)	-71.0	NM_199476	382985.0	Mm.24738	NM_199476	ENSMUSG00000022292	Rrm2b	p53R2	ribonucleotide reductase M2 B (TP53 inducible)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-20829615-2	chr16	20829515	20829715	+	886.900024	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-95104.0	NM_009379	21832.0	Mm.3943	NM_009379	ENSMUSG00000022847	Thpo	Mgdf|Ml|Mpllg|Tpo	thrombopoietin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-118743092-2	chr2	118742992	118743192	+	648.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-2666.0	NM_001301269	100043272.0	Mm.398072	NM_001301269	ENSMUSG00000074918	Inafm2	5430417L22Rik	InaF motif containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-36021782-2	chr2	36021682	36021882	+	754.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27510.0	NM_026703	68375.0	Mm.19834	NM_026703	ENSMUSG00000026895	Ndufa8	0610033L03Rik|AW261656	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-92678216-2	chr1	92678116	92678316	+	620.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29375.0	NM_153114	260301.0	Mm.219545	NM_153114	ENSMUSG00000044055	Otos	OTOSP	otospiralin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-41662876-3	chr13	41662777	41662977	+	625.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56661.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-83067097-4	chr8	83066998	83067198	+	784.729187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177378, intron 6 of 6)	intron (NM_177378, intron 6 of 6)	-98254.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	2.4081858417915	2.36972494096844	2.40750380187543	2.53555353261593	2.24211754250665	2.09554021780789	1.40865237245909	2.6343564144195	-0.585250927892493	0.505987514819063	0.941896700889395
Merged-chr3-101836290-4	chr3	101836208	101836408	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172295)	promoter-TSS (NM_172295)	-85.0	NM_172295	242125.0	Mm.32900	NM_172295	ENSMUSG00000044313	Mab21l3	-	mab-21-like 3 (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-7041094-2	chr19	7040994	7041194	+	650.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1068.0	NM_016737	20867.0	Mm.258633	NM_016737	ENSMUSG00000024966	Stip1	Hop|Sti1|p60	stress-induced phosphoprotein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-102757364-4	chr2	102757268	102757468	+	850.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077514, intron 7 of 10)	intron (NM_001077514, intron 7 of 10)	-10608.0	NR_153853	102637542.0	Mm.371582	NR_153852		Gm13872	-	predicted gene 13872	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-114438951-2	chr8	114438851	114439051	+	627.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019573)	promoter-TSS (NM_019573)	-701.0	NM_019573	80707.0	Mm.440420	NM_019573	ENSMUSG00000004637	Wwox	5330426P09Rik|9030416C10Rik|WOX1	WW domain-containing oxidoreductase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-55040743-3	chr18	55040704	55040904	+	597.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48213.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-44392357-2	chr16	44392257	44392457	+	859.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2442.0	NM_001033247	212517.0	Mm.327888	NM_001033247	ENSMUSG00000071550	Cfap44	6330444M21Rik|D16Ertd642e|Gm1750|Wdr52	cilia and flagella associated protein 44	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-136899860-1	chr4	136899760	136899960	+	1000.0	f1_balb.idr	Intergenic	RSINE1|SINE|B4	-1016.0	NM_007572	12259.0	Mm.439957	NM_007572	ENSMUSG00000036887	C1qa	AI255395|C1q	complement component 1, q subcomponent, alpha polypeptide	protein-coding	1.57054680237159	3.0294510189999	1.22094742613821	1.83408677351933	2.13714916947564	1.54924294262556	2.80417621266905	2.46143168950535	0.409106761549656	0.686772673612439	0.996533206832645
Merged-chr2-180052231-2	chr2	180052131	180052331	+	686.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_178750, intron 1 of 10)	intron (NM_178750, intron 1 of 10)	9748.0	NM_178750	269397.0	Mm.63068	NM_178750	ENSMUSG00000039086	Ss18l1	A230053O16Rik|CREST	SS18, nBAF chromatin remodeling complex subunit like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-31073507-4	chr17	31073402	31073602	+	919.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009593, intron 2 of 14)	intron (NM_009593, intron 2 of 14)	15808.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	3.0364129612548	3.61815480763834	1.43389798198476	1.38966337505543	3.56630508238159	2.60786514332612	3.24773952242806	2.42875071308905	0.531771474989059	0.556509064104323	0.960321604678676
Merged-chr16-32507640-2	chr16	32507569	32507769	+	799.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_199309)	TTS (NM_199309)	11388.0	NM_199309	245308.0	Mm.76859	NM_199309	ENSMUSG00000052363	Zdhhc19	Gm1744|Gm616	zinc finger, DHHC domain containing 19	protein-coding	1.5387918072478	2.29237179364852	1.45883661799309	1.9143971671951	2.64648247654064	1.90140919841071	1.46836415800091	2.35260367962258	0.863576556436376	0.3845135735877	0.875517558686467
Merged-chr2-167661719-4	chr2	167661596	167661796	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145538)	promoter-TSS (NM_145538)	-152.0	NM_145538	407243.0	Mm.4863	NM_145538	ENSMUSG00000090213	Tmem189	AI840826|Kua	transmembrane protein 189	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-55520727-3	chr3	55520615	55520815	+	769.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357475, intron 16 of 16)	intron (NM_001357475, intron 16 of 16)	58987.0	NM_001357476	13175.0	Mm.393242	NM_019978	ENSMUSG00000027797	Dclk1	1700113D08Rik|2810480F11Rik|AI836758|Click-I|Cpg16|Dcamkl1|Dcl|Dclk|mKIAA0369	doublecortin-like kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-61719377-2	chr11	61719277	61719477	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033227, intron 2 of 15)	intron (NM_001033227, intron 2 of 15)	1422.0	NM_001033227	109342.0	Mm.441070	NM_001033227	ENSMUSG00000042371	Slc5a10	C330021F16Rik|SGLT5	solute carrier family 5 (sodium/glucose cotransporter), member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91487061-3	chr16	91486975	91487175	+	681.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010508, intron 1 of 10)	ORR1A1|LTR|ERVL-MaLR	1860.0	NM_010508	15975.0	Mm.502	NM_010508	ENSMUSG00000022967	Ifnar1	Ifar|Ifnar|Ifrc|Infar	interferon (alpha and beta) receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106815600-4	chr11	106815482	106815682	+	975.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177088, exon 15 of 20)	exon (NM_177088, exon 15 of 20)	26330.0	NM_001166685	320162.0	Mm.30524	NM_177088	ENSMUSG00000018372	Cep95	4732496G21Rik|AI118346|AI448335|Ccdc45|D330027A14Rik|F630025I20Rik	centrosomal protein 95	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64959652-4	chr5	64959547	64959747	+	814.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359180, intron 1 of 1)	intron (NM_001359180, intron 1 of 1)	449.0	NM_001359180	21899.0	Mm.42146	NM_011604	ENSMUSG00000051498	Tlr6	-	toll-like receptor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70041701-2	chr11	70041601	70041801	+	576.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007864, intron 12 of 19)	intron (NM_007864, intron 12 of 19)	-12423.0	NM_001291131	11889.0	Mm.6559	NM_009714	ENSMUSG00000020884	Asgr1	ASGPR1|Asgr|Asgr-1|HL-1	asialoglycoprotein receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27051767-4	chr17	27051662	27051862	+	850.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5542.0	NM_080553	16440.0	Mm.458106	NM_080553	ENSMUSG00000042644	Itpr3	IP3R 3|Ip3r3|Itpr-3|tf	inositol 1,4,5-triphosphate receptor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53122455-3	chr4	53122346	53122546	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 5 of 49)	intron (NM_013454, intron 5 of 49)	37449.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119458415-2	chr11	119458315	119458515	+	607.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32820.0	NR_153849	78439.0	Mm.440446	NR_153849	ENSMUSG00000109408	A930037H05Rik	Gm44935	RIKEN cDNA A930037H05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180762867-4	chr1	180762753	180762953	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	36810.0	NM_133225	170760.0	Mm.272981	NM_133225	ENSMUSG00000026499	Acbd3	60kDa|8430407O11Rik|D1Ertd10e|GCP60|GOLPH1|Gocap1|Pap7	acyl-Coenzyme A binding domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-125392370-3	chr5	125392274	125392474	+	910.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2357.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-68939816-4	chr11	68939703	68939903	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20B3A_MM|LTR|ERVK	-12722.0	NM_145746	252868.0	Mm.76826	NM_145746	ENSMUSG00000032921	Odf4	Oppo1	outer dense fiber of sperm tails 4	protein-coding	4.39048606890208	5.21290740953579	5.43047509223754	4.36683799669303	4.70630812712471	4.82684321180602	5.51859762866129	4.49326567247121	0.0191801562307067	0.960639977572749	0.998431161219273
Merged-chr11-120932851-4	chr11	120932756	120932956	+	944.2708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027745)	promoter-TSS (NM_027745)	16.0	NM_027745	71276.0	Mm.275751	NM_027745	ENSMUSG00000048445	Ccdc57	4933434G05Rik	coiled-coil domain containing 57	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47658979-3	chr17	47658879	47659079	+	918.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198421, intron 2 of 6)	intron (NM_198421, intron 2 of 6)	28289.0	NM_198421	224836.0	Mm.59393	NM_198421	ENSMUSG00000090115	Usp49	C330046L10Rik|Gm545	ubiquitin specific peptidase 49	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-10572741-3	chr17	10572605	10572805	+	615.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027032, intron 4 of 4)	intron (NM_027032, intron 4 of 4)	116489.0	NR_077238	319750.0	Mm.383485	NR_077237	ENSMUSG00000089633	A230009B12Rik	-	RIKEN cDNA A230009B12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-103827087-2	chr14	103826987	103827187	+	658.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001276296, intron 1 of 7)	intron (NM_001276296, intron 1 of 7)	16614.0	NM_007904	13618.0	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-137511385-2	chr5	137511285	137511485	+	862.3333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TCTG)n|Simple_repeat|Simple_repeat	-7495.0	NM_031408	57330.0	Mm.268344	NM_031408	ENSMUSG00000029714	Gigyf1	Perq1|mKIAA4110	GRB10 interacting GYF protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-92042796-4	chr5	92042707	92042907	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001276315)	promoter-TSS (NM_001276315)	-111.0	NM_001276315	53886.0	Mm.44963	NM_016912	ENSMUSG00000029403	Cdkl2	5330436L21Rik|AI505225|KKIAMRE|Kkm	cyclin-dependent kinase-like 2 (CDC2-related kinase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-20769678-4	chr10	20769574	20769774	+	898.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44596.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	3.47341568676145	2.51137675393554	3.33537448305538	2.35562340671678	2.38451711371903	2.530181594397	3.36047052214008	2.50829407182209	-0.471365600389946	0.51721572415101	0.947641799425091
Merged-chr9-48448061-2	chr9	48447960	48448160	+	780.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6284.0	NR_026561	667933.0	Mm.491076	NR_026561		Gm8884	EG667933	predicted gene 8884	ncRNA	1.02066940018907	0.367742473606025	0.359735923220315	0.353523027795611	0.948986473231901	0.369540403425808	0.553134995122631	1.11716862606265	1.16089769640606	0.531566828242338	1
Merged-chr14-67723377-3	chr14	67723290	67723490	+	680.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111028, intron 1 of 11)	ORR1D1|LTR|ERVL-MaLR	7292.0	NM_001285933	105440.0	Mm.6720	NM_134073	ENSMUSG00000034327	Kctd9	-	potassium channel tetramerisation domain containing 9	protein-coding	0.835852491913327	1.08478825558451	1.15383532010791	0.5779021725236	1.05377393536782	0.594384134190184	0.918921248026056	0.888003291565406	-0.303394005132998	0.841589508359924	1
Merged-chr5-147894820-4	chr5	147894687	147894887	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027872)	promoter-TSS (NM_027872)	28.0	NM_001357002	71706.0	Mm.153218	NM_027872	ENSMUSG00000029650	Slc46a3	1200006F02Rik	solute carrier family 46, member 3	protein-coding	5.79975399172322	5.48496930833365	6.05234715183111	6.22821867990268	5.72811754508346	5.13814902326043	6.22019647408982	6.01641378618102	-0.0955372931821283	0.733230959875888	0.998431161219273
Merged-chr1-128463749-1	chr1	128463649	128463849	+	551.0	f0_balb.idr	Intergenic	Intergenic	-46333.0	NM_145507	226414.0	Mm.28693	NM_145507	ENSMUSG00000026356	Dars	5730439G15Rik	aspartyl-tRNA synthetase	protein-coding	1.24059423245733	2.10918210429016	1.62535349576758	0.928445786766128	1.61028910234184	1.55846201086517	0.9453657055689	1.58492297459852	-0.364486241975119	0.772165397860491	0.998431161219273
Merged-chr6-72601934-4	chr6	72601826	72602026	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026159, intron 3 of 10)	intron (NM_026159, intron 3 of 10)	3298.0	NM_026159	67442.0	Mm.305108	NM_026159	ENSMUSG00000056666	Retsat	0610039N19Rik|C80029|MMT-7|Ppsig	retinol saturase (all trans retinol 13,14 reductase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-32754542-2	chr19	32754442	32754642	+	561.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3035.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21011177-4	chr9	21011066	21011266	+	956.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	-4774.0	NM_010493	15894.0	Mm.435508	NM_010493	ENSMUSG00000037405	Icam1	CD54|Icam-1|Ly-47|MALA-2	intercellular adhesion molecule 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-134762598-4	chr4	134762496	134762696	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145554, intron 1 of 8)	intron (NM_145554, intron 1 of 8)	5408.0	NM_145554	100017.0	Mm.27486	NM_145554	ENSMUSG00000037295	Ldlrap1	AA691260|ARH2|Arh|Arh1|FHCB1|FHCB2	low density lipoprotein receptor adaptor protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45783679-2	chr7	45783648	45783848	+	738.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_110987)	promoter-TSS (NR_110987)	-199.0	NM_001005511	381983.0	Mm.44928	NM_001005511	ENSMUSG00000062044	Lmtk3	BC059845|aatyk3	lemur tyrosine kinase 3	protein-coding	-0.429165910719733	-0.873612895455471	-0.880042310359133	-0.882147047040279	-0.515285789036623	-0.870994549976101	-0.879439369138014	-0.881779851595733	-0.36230783815378	0.907723332250447	1
Merged-chr5-52741590-4	chr5	52741483	52741683	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025951)	promoter-TSS (NM_025951)	9.0	NM_025951	67073.0	Mm.248647	NM_025951	ENSMUSG00000029186	Pi4k2b	2610042N09Rik|4933409G22Rik	phosphatidylinositol 4-kinase type 2 beta	protein-coding	1.82060302337324	1.69194263805942	1.49803973589596	2.01654298098084	0.730450915734695	0.787240567728283	0.769349022961718	0.753650907087612	-5.17265148850141	0.000458989328787609	0.0104166846786767
Merged-chr11-70459837-4	chr11	70459742	70459942	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_151497, exon 1 of 6)	non-coding (NR_151497, exon 1 of 6)	142.0	NR_151499	66102.0	Mm.425692	NM_023158	ENSMUSG00000018920	Cxcl16	0910001K24Rik|AV290116|BB024863|CXCL16v1|CXCL16v2|SR-PSOX|Zmynd15|b2b498Clo	chemokine (C-X-C motif) ligand 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120853731-4	chr11	120853652	120853852	+	809.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027745, intron 18 of 18)	intron (NM_027745, intron 18 of 18)	-29205.0	NM_007988	14104.0	Mm.236443	NM_007988	ENSMUSG00000025153	Fasn	A630082H08Rik|FAS	fatty acid synthase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114673610-2	chr11	114673510	114673710	+	826.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1858.0	NM_053273	117160.0	Mm.271934	NM_053273	ENSMUSG00000034714	Ttyh2	1110001A03Rik	tweety family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-31003436-4	chr17	31003345	31003545	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177465, intron 20 of 21)	intron (NM_177465, intron 20 of 21)	48762.0	NM_177465	52020.0	Mm.25923	NM_177465	ENSMUSG00000054134	Umodl1	D17Ertd488e	uromodulin-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-5036607-4	chr2	5036508	5036708	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356487, intron 7 of 13)	intron (NM_001356487, intron 7 of 13)	-23817.0	NM_027290	70024.0	Mm.23828	NM_027290	ENSMUSG00000026669	Mcm10	2410041F14Rik|AU018508|C330019M07Rik|C79164	minichromosome maintenance 10 replication initiation factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-46637302-4	chr17	46637199	46637399	+	909.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357130, intron 6 of 15)	intron (NM_001357130, intron 6 of 15)	-7795.0	NM_175168	71461.0	Mm.181833	NM_175168	ENSMUSG00000023972	Ptk7	8430404F20Rik|chz|mPTK7/CCK4	PTK7 protein tyrosine kinase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-142440409-2	chr7	142440309	142440509	+	633.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001285858)	TTS (NM_001285858)	-2059.0	NM_009405	21953.0	Mm.39469	NM_009405	ENSMUSG00000031097	Tnni2	-	troponin I, skeletal, fast 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-82769348-2	chr6	82769248	82769448	+	735.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013820, intron 1 of 17)	B1F|SINE|Alu	5106.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-87672283-4	chr6	87672193	87672393	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001170489)	promoter-TSS (NM_001170489)	-125.0	NM_001170489	72103.0	Mm.31770	NM_024251	ENSMUSG00000030051	Aplf	2010301N04Rik|AI452191	aprataxin and PNKP like factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-144679759-1	chr3	144679659	144679859	+	666.0	f0_balb.idr	Intergenic	Intergenic	40576.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-77535205-3	chr8	77535078	77535278	+	798.744446	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14219.0	NM_001081240	102182.0	Mm.197630	NM_178903	ENSMUSG00000037134	Prmt9	AI931714|Prmt10	protein arginine methyltransferase 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30760916-4	chr7	30760811	30761011	+	902.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-2845.0	NM_001166173	73712.0	Mm.30138	NM_028618	ENSMUSG00000060962	Dmkn	1110014F24Rik|AW561900|C130074A08|SK30|SK89|cI-36	dermokine	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-82772841-3	chr6	82772743	82772943	+	899.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013820, intron 1 of 17)	intron (NM_013820, intron 1 of 17)	1611.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-9997502-1	chr19	9997402	9997602	+	668.0	f1_balb.idr	intron (NM_011913, intron 1 of 11)	intron (NM_011913, intron 1 of 11)	4131.0	NM_011913	24115.0	Mm.31577	NM_011913	ENSMUSG00000037418	Best1	Bmd|Vmd2|mBest1	bestrophin 1	protein-coding	-1.18818405238703	-1.1621273909064	-1.17340543805306	-1.18266956177369	-0.508992984534732	-1.15968339104222	-1.17085233538681	-1.18101128805699	2.76775479490304	0.421927342186551	1
Merged-chr2-158147591-2	chr2	158147491	158147691	+	931.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1199.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-121412967-2	chr10	121412867	121413067	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_138956, exon 5 of 5)	exon (NM_138956, exon 5 of 5)	47877.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-95036382-4	chr9	95036236	95036436	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177909, intron 11 of 15)	MTE2a|LTR|ERVL-MaLR	284507.0	NR_106116	102465763.0		NR_106116	ENSMUSG00000098251	Mir7656	Gm27614|mmu-mir-7656	microRNA 7656	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-39173216-2	chr10	39173116	39173316	+	648.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9422.0	NM_001127376	327743.0	Mm.208111	NM_001127376	ENSMUSG00000062074	Wisp3	CCN6|Gm735|WISP-3	WNT1 inducible signaling pathway protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-27665287-2	chr3	27665187	27665387	+	625.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_173182, intron 1 of 25)	intron (NM_173182, intron 1 of 25)	45165.0	NM_001356953	72007.0	Mm.38832	NM_173182	ENSMUSG00000039286	Fndc3b	1600019O04Rik|AW550168|Fad104|mKIAA4164	fibronectin type III domain containing 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-84004739-4	chr12	84004615	84004815	+	936.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	-4787.0	NM_012006	26897.0	Mm.1978	NM_012006	ENSMUSG00000072949	Acot1	ACH2|CTE-1|CTE-I|Cte1|D12Ucla1	acyl-CoA thioesterase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-17374560-4	chr17	17374459	17374659	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_025934, exon 1 of 10)	5' UTR (NM_025934, exon 1 of 10)	227.0	NM_025934	67045.0	Mm.35117	NM_025934	ENSMUSG00000023852	Riok2	2010110K24Rik|2410085M17Rik	RIO kinase 2	protein-coding	2.78341359065931	1.62002205825991	2.70005191666675	3.44508918204501	2.50475521749508	3.32687987403935	3.2967599202177	2.85466530959934	0.416143321270541	0.581459719687662	0.966599221005409
Merged-chr13-60356352-4	chr13	60356282	60356482	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	150911.0	NR_036449	100503759.0	Mm.38101	NM_177810	ENSMUSG00000050765	Gm5084	A030007L22|EG328264	predicted gene 5084	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-50652883-2	chr10	50652783	50652983	+	636.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198007, intron 11 of 41)	ORR1C1|LTR|ERVL-MaLR	60214.0	NM_198007	77987.0	Mm.222497	NM_198007	ENSMUSG00000038774	Ascc3	ASC1p200|B630009I04Rik|BC023451|D430001L07Rik|D630041L21|Helic1|RNAH	activating signal cointegrator 1 complex subunit 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-114837182-3	chr13	114837078	114837278	+	710.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008396, exon 29 of 30)	exon (NM_008396, exon 29 of 30)	18941.0	NM_001113374	17434.0	Mm.19027	NM_013826	ENSMUSG00000015536	Mocs2	AI415403	molybdenum cofactor synthesis 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-129526218-3	chr7	129526126	129526326	+	928.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65637.0	NM_172255	207425.0	Mm.229323	NM_172255	ENSMUSG00000042055	Wdr11	2900055P10Rik|AW489876|Brwd2|mKIAA1351	WD repeat domain 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-75307215-6	chr18	75307294	75307494	+	936.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10065.0	NR_045393	100503117.0	Mm.250517	NR_045393	ENSMUSG00000102047	2010010A06Rik	5033420E22Rik	RIKEN cDNA 2010010A06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-21973337-3	chr14	21973239	21973439	+	871.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER63A|DNA|hAT-Blackjack	16262.0	NM_145459	218820.0	Mm.292401	NM_145459	ENSMUSG00000039081	Zfp503	AI181838|B830002A16Rik|Nolz-1|Nolz1|Znf503	zinc finger protein 503	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-74720114-2	chr15	74720014	74720214	+	905.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1120.0	NM_198607	223626.0	Mm.268603	NM_198607	ENSMUSG00000056665	Them6	4930572J05Rik	thioesterase superfamily member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-8429927-1	chr11	8429827	8430027	+	541.0	f1_c57bl6.idr	Intergenic	Intergenic	234608.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-13540492-2	chr17	13540392	13540592	+	603.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045436, intron 2 of 4)	intron (NR_045436, intron 2 of 4)	13602.0	NR_045436	72578.0	Mm.46549	NR_045436	ENSMUSG00000038347	2700054A10Rik	-	RIKEN cDNA 2700054A10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-63076499-4	chr14	63076353	63076553	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21380.0	NR_046019	72609.0	Mm.387101	NR_046019		2700070H01Rik	-	RIKEN cDNA 2700070H01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-60933648-4	chr10	60933557	60933757	+	909.0166630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033616, intron 1 of 2)	intron (NR_033616, intron 1 of 2)	4475.0	NR_033616	73616.0	Mm.159038	NR_033616	ENSMUSG00000037247	Pldi	1700125F08Rik|Poldi	polymorphic derived intron containing	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-83212646-4	chr17	83212538	83212738	+	996.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2645.0	NM_134117	106522.0	Mm.311974	NM_134117	ENSMUSG00000024247	Pkdcc	AI115348|AW548124|Adtk1|ESTM17|MAd1|Sgk493|Vlk|X83346	protein kinase domain containing, cytoplasmic	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-61696567-4	chr14	61696482	61696682	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14209.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-32947315-3	chr19	32947216	32947416	+	734.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	189739.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-64100655-4	chr15	64100553	64100753	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 25 of 28)	intron (NM_001276461, intron 25 of 28)	-40205.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80824075-4	chr10	80823941	80824141	+	925.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2615.0	NM_001301034	18245.0	Mm.398119	NM_008753	ENSMUSG00000035242	Oaz1	AZ-1|AZ1|Antizyme|ODC-Az|Oaz	ornithine decarboxylase antizyme 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-73186879-6	chr15	73186638	73186838	+	820.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1791.0	NM_153178	239528.0	Mm.23095	NM_153178	ENSMUSG00000036698	Ago2	1110029L17Rik|2310051F07Rik|AI225898|AL022874|AW546247|Eif2c2|Gerp95|Gm10365|mKIAA4215	argonaute RISC catalytic subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132491949-4	chr4	132491843	132492043	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_144907)	TTS (NM_144907)	18513.0	NM_144907	230784.0	Mm.23608	NM_144907	ENSMUSG00000028893	Sesn2	HI95|SEST2|Ses2	sestrin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94416642-2	chr10	94416542	94416742	+	632.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 1 of 4)	intron (NM_001359762, intron 1 of 4)	-98215.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-125671411-2	chr2	125671311	125671511	+	613.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_199022, intron 4 of 11)	intron (NM_199022, intron 4 of 11)	-1689.0	NM_025613	58521.0	Mm.425101	NM_025613	ENSMUSG00000091337	Eid1	2610002K20Rik|Cri1|EID-1|ORF12|PNAS-22|PTD014	EP300 interacting inhibitor of differentiation 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-152293123-2	chr4	152293023	152293223	+	628.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1461.0	NM_008237	15207.0	Mm.3516	NM_008237	ENSMUSG00000028946	Hes3	Hes-3|bHLHb43	hes family bHLH transcription factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6090511-2	chr19	6090411	6090611	+	987.416626	f1_balb.idr|f1_c57bl6.idr	exon (NM_026410, exon 5 of 6)	exon (NM_026410, exon 5 of 6)	-3908.0	NM_001362427	225852.0	Mm.301487	NM_001362427		Gm550	-	predicted gene 550	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-46374605-3	chr4	46374483	46374683	+	712.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	14840.0	NM_029086	74753.0	Mm.45973	NM_029086	ENSMUSG00000028331	Trmo	5830415F09Rik|AV014846|Nap1	tRNA methyltransferase O	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-24037717-3	chr13	24037603	24037803	+	944.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026825, intron 33 of 37)	intron (NM_026825, intron 33 of 37)	-46489.0	NM_145399	214189.0	Mm.255667	NM_145399	ENSMUSG00000021337	Scgn	-	secretagogin, EF-hand calcium binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-70014041-2	chr9	70013941	70014141	+	719.233337	f1_balb.idr|f1_c57bl6.idr	intron (NM_001282083, intron 1 of 4)	intron (NM_001282083, intron 1 of 4)	1493.0	NR_104093	235459.0	Mm.293117	NM_199151	ENSMUSG00000033543	Gtf2a2	TFIIA-gamma|TfIIg|Tfiia2	general transcription factor II A, 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-38043897-3	chr19	38043789	38043989	+	767.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001099634)	promoter-TSS (NM_001099634)	-312.0	NM_001302140	226101.0	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding	3.49064608647791	3.62392839220363	3.35426635532832	3.17891946919414	3.57247106313051	2.68776197730214	2.59619143354072	2.90192028362146	-0.670044115280434	0.272077845815952	0.775512352098463
Merged-chr1-93654547-2	chr1	93654447	93654647	+	591.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18820.0	NM_021537	59041.0	Mm.28761	NM_021537	ENSMUSG00000026277	Stk25	1500019J11Rik|AU018434|C86992|Ste20-like|Ysk1	serine/threonine kinase 25 (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-56421400-1	chr13	56421300	56421500	+	662.0	f0_balb.idr	Intergenic	L1MD1|LINE|L1	-16955.0	NM_177809	328258.0	Mm.482177	NM_177809	ENSMUSG00000021509	Slc25a48	AU042651|E230025K15	solute carrier family 25, member 48	protein-coding	-0.28157073058951	0.714895959528905	-0.269877724608631	-0.274253327170818	0.0220021127390843	-0.0451051082113219	-0.268631195317635	-0.273487204006855	-1.51458465392481	0.521937073538182	1
Merged-chr4-122896869-2	chr4	122896769	122896969	+	949.3333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	-10793.0	NM_001358036	12331.0	Mm.8687	NM_007598	ENSMUSG00000028656	Cap1	-	CAP, adenylate cyclase-associated protein 1 (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-11264902-2	chr19	11264802	11265002	+	726.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007641, intron 1 of 6)	intron (NM_007641, intron 1 of 6)	1249.0	NM_007641	12482.0	Mm.4046	NM_007641	ENSMUSG00000024673	Ms4a1	AA960661|Cd20|Ly-44|Ms4a2	membrane-spanning 4-domains, subfamily A, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-50455947-4	chr6	50455884	50456084	+	938.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001347213, exon 1 of 24)	5' UTR (NM_001347213, exon 1 of 24)	186.0	NM_001163645	71720.0	Mm.44153	NM_027881	ENSMUSG00000029822	Osbpl3	1200014M06Rik|6720421I08Rik|A530055M08|ORP-3|ORP3|OSBP3	oxysterol binding protein-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-80373086-4	chr18	80372987	80373187	+	942.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8833.0	NM_001190373	240444.0	Mm.279568	NM_001190373	ENSMUSG00000059852	Kcng2	AA591524	potassium voltage-gated channel, subfamily G, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-12834384-2	chr13	12834284	12834484	+	791.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus1|LINE|L1	-34305.0	NM_011118	18812.0	Mm.457984	NM_011118	ENSMUSG00000056457	Prl2c3	Ghd1|MRP-2|MRP-3|Mrpplf3|PLF-2|PLF-3|Plf2|Prl2c4|mrp/plf3	prolactin family 2, subfamily c, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-21030405-4	chr5	21030287	21030487	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011203, intron 1 of 17)	intron (NM_011203, intron 1 of 17)	4860.0	NM_001356592	19248.0	Mm.319117	NM_011203	ENSMUSG00000028771	Ptpn12	P19-PTP|PTP-P19|PTP-PEST|PTPG1	protein tyrosine phosphatase, non-receptor type 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-147046484-3	chr5	147046388	147046588	+	989.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080795, intron 1 of 9)	intron (NM_080795, intron 1 of 9)	30084.0	NM_080795	140887.0	Mm.272203	NM_080795	ENSMUSG00000016520	Lnx2	9630046H24|AW209022	ligand of numb-protein X 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-72796477-4	chr5	72796386	72796586	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013689, intron 3 of 17)	intron (NM_013689, intron 3 of 17)	-43709.0	NM_001122754	22165.0	Mm.3264	NM_013698	ENSMUSG00000054892	Txk	A130089B16Rik|Btkl|PTK-RL-18|PTK4|Rlk	TXK tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97363362-3	chr6	97363276	97363476	+	754.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 6 of 23)	L4_A_Mam|LINE|RTE-X	95910.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-39900771-4	chr1	39900671	39900871	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252201)	promoter-TSS (NM_001252201)	-142.0	NM_001252202	26921.0	Mm.491139	NM_008696	ENSMUSG00000026074	Map4k4	9430080K19Rik|AU043147|AU045934|AW046177|HGK|Nik	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-163607910-2	chr2	163607780	163607980	+	935.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_131225, intron 2 of 3)	ID_B1|SINE|B4	668.0	NM_001305803	76080.0	Mm.89828	NM_029512	ENSMUSG00000017679	Ttpal	3110080A02Rik|5830472M02Rik	tocopherol (alpha) transfer protein-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-5194886-6	chr10	5194789	5194989	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001079686)	promoter-TSS (NM_001079686)	-182.0	NM_001079686	64009.0	Mm.331626	NM_022027	ENSMUSG00000096054	Syne1	8B|A330049M09Rik|BE692247|C130039F11Rik|CPG2|KASH1|Myne1|mKIAA1756|myne-1	spectrin repeat containing, nuclear envelope 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-34374033-4	chr6	34373933	34374133	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10214.0	NM_172398	67861.0	Mm.70371	NM_172398	ENSMUSG00000061758	Akr1b10	2310005E10Rik|Akr1b16	aldo-keto reductase family 1, member B10 (aldose reductase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118494265-4	chr11	118494165	118494365	+	925.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024931, intron 13 of 14)	intron (NM_001024931, intron 13 of 14)	17433.0	NM_001359368	217364.0	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-94549163-2	chr8	94549078	94549278	+	648.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153507, intron 2 of 15)	intron (NM_153507, intron 2 of 15)	16150.0	NM_153507	234577.0	Mm.291815	NM_153507	ENSMUSG00000034361	Cpne2	3322401K10Rik	copine II	protein-coding	1.27608937933732	0.504214823609405	0.0873859657701777	0.0810141356634816	0.519301044401402	0.0973779120107482	0.0891957893559496	0.0821319410598675	-2.29610576564625	0.274467688085394	1
Merged-chr5-121606396-2	chr5	121606296	121606496	+	995.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_178799, intron 6 of 10)	intron (NM_178799, intron 6 of 10)	12542.0	NM_178799	338350.0	Mm.482918	NM_178799	ENSMUSG00000042647	Acad12	9330129D05Rik	acyl-Coenzyme A dehydrogenase family, member 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-129631221-4	chr6	129631138	129631338	+	771.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-7374.0	NM_001286018	27007.0	Mm.8217	NM_033078	ENSMUSG00000030149	Klrk1	D6H12S2489E|NKG2-D|Nkg2d	killer cell lectin-like receptor subfamily K, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-110286983-4	chr7	110286830	110287030	+	788.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	65227.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-103141746-1	chr11	103141646	103141846	+	542.0	f1_balb.idr	Intergenic	Intergenic	8387.0	NM_027658	71059.0	Mm.273871	NM_027658	ENSMUSG00000043372	Hexim2	4933402L21Rik	hexamethylene bis-acetamide inducible 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-119289283-4	chr2	119289183	119289383	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172269, intron 1 of 4)	intron (NM_172269, intron 1 of 4)	541.0	NM_172269	228545.0	Mm.294761	NM_172269	ENSMUSG00000034216	Vps18	9930024E13Rik	VPS18 CORVET/HOPS core subunit	protein-coding	4.36788454478505	4.76187428724107	4.37270155788364	3.1559713521176	4.07788252072127	5.33634511702283	3.61826584820985	4.47409092984872	0.317629774806609	0.525555571681023	0.948340152465298
Merged-chr18-64598139-3	chr18	64598041	64598241	+	940.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001488, intron 2 of 27)	intron (NM_001001488, intron 2 of 27)	62859.0	NM_001001488	54670.0	Mm.270043	NM_001001488	ENSMUSG00000039529	Atp8b1	AI451886|FIC1|Ic	ATPase, class I, type 8B, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-58711948-1	chr7	58711848	58712048	+	568.0	f0_balb.idr	intron (NM_009728, intron 1 of 20)	intron (NM_009728, intron 1 of 20)	53746.0	NM_009728	11982.0	Mm.135129	NM_009728	ENSMUSG00000025324	Atp10a	Atp10c|pfatp	ATPase, class V, type 10A	protein-coding	0.091080311543137	0.108951805566029	0.103102118930477	0.0985856538080764	0.573698172970052	0.30706358646015	0.436500336161331	0.823379045475142	4.10926739295049	0.0394662584772193	1
Merged-chr6-127247749-2	chr6	127247649	127247849	+	637.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60218.0	NR_073373	232386.0	Mm.257367	NR_073373	ENSMUSG00000107153	Gm38404	D130058E03	predicted gene, 38404	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95519691-2	chr3	95519591	95519791	+	894.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7095.0	NM_021281	13040.0	Mm.3619	NM_021281	ENSMUSG00000038642	Ctss	Cats	cathepsin S	protein-coding	0.562893764130808	1.35680231042373	0.411393473222134	1.23437108925765	0.391065433019155	1.14188655832738	0.413759913742009	0.404513469272544	-1.53920021060703	0.38663857049487	0.876478988598962
Merged-chr17-28217816-4	chr17	28217723	28217923	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027185, intron 3 of 10)	intron (NM_027185, intron 3 of 10)	10045.0	NM_027185	23853.0	Mm.204731	NM_027185	ENSMUSG00000002257	Def6	2410003F05Rik|6430538D02Rik|AV094905|Ibp|Slat|Slat2|Slat6	differentially expressed in FDCP 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80024380-6	chr7	80024284	80024484	+	991.7666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146000)	promoter-TSS (NM_001146000)	-430.0	NM_001145999	209225.0	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	-2.05752322593321	-2.15521190974092	-2.16307242109104	-2.16952927915413	-2.17938029103484	-2.15350850414045	-2.16129297361887	-2.16837350464794	-0.683654500252594	0.846597994014493	1
Merged-chr15-99816954-2	chr15	99816854	99817054	+	630.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113545, intron 4 of 10)	B1_Mur1|SINE|Alu	3195.0	NM_023063	65970.0	Mm.33207	NM_023063	ENSMUSG00000023022	Lima1	Eplin	LIM domain and actin binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-36221511-2	chr2	36221411	36221611	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A2|LTR|ERVL-MaLR	-8915.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-31412051-3	chr3	31411949	31412149	+	938.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR17|LTR|ERVK	-101730.0	NM_172861	241919.0	Mm.285366	NM_172861	ENSMUSG00000069072	Slc7a14	A930013N06|BC061928	solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-63430613-3	chr17	63430537	63430737	+	784.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015794, intron 4 of 8)	MTEa|LTR|ERVL-MaLR	69943.0	NM_015794	50758.0	Mm.136366	NM_015794	ENSMUSG00000023965	Fbxl17	6330576B01Rik|AI452053|BB073797|C130023C01Rik|Fbx13|Fbxo13	F-box and leucine-rich repeat protein 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-31277367-4	chr17	31277261	31277461	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025290)	promoter-TSS (NM_025290)	-5.0	NM_025290	22092.0	Mm.12743	NM_025290	ENSMUSG00000024033	Rsph1	MCA|Tsga2	radial spoke head 1 homolog (Chlamydomonas)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-35975895-3	chr1	35975805	35976005	+	844.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-92495.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-118237383-2	chr14	118237283	118237483	+	642.400024	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177753)	promoter-TSS (NM_177753)	-353.0	NM_177753	223227.0	Mm.70950	NM_177753	ENSMUSG00000061517	Sox21	Sox25	SRY (sex determining region Y)-box 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106561046-4	chr11	106560958	106561158	+	996.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198292, intron 2 of 11)	intron (NM_198292, intron 2 of 11)	51872.0	NM_198292	21763.0	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-93149061-2	chr3	93148961	93149161	+	573.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081200, exon 3 of 3)	exon (NM_001081200, exon 3 of 3)	4274.0	NM_001081200	381457.0	Mm.458570	NM_001081200	ENSMUSG00000078657	Crnn	Gm1015	cornulin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-107349354-2	chr11	107349254	107349454	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 1 of 9)	intron (NR_153311, intron 1 of 9)	121366.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-49169977-3	chr13	49169882	49170082	+	991.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17565.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-122882797-4	chr10	122882694	122882894	+	924.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110218, intron 6 of 9)	intron (NM_001110218, intron 6 of 9)	102930.0	NR_029527	387251.0		NR_029527	ENSMUSG00000065406	Mirlet7i	Mirnlet7i|let-7i|mmu-let-7i	microRNA let7i	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-67080718-2	chr13	67080618	67080818	+	766.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001012449, intron 1 of 2)	intron (NM_001012449, intron 1 of 2)	827.0	NM_001012448	432769.0	Mm.458849	NM_001012325	ENSMUSG00000058883	Zfp708	Rslcan11	zinc finger protein 708	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52033229-3	chr13	52033152	52033352	+	874.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63489.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-84719798-2	chr2	84719698	84719898	+	681.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-4634.0	NM_144887	228136.0	Mm.288508	NM_144887	ENSMUSG00000034075	Zdhhc5	1110032A17Rik|AI451382|Zisp	zinc finger, DHHC domain containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-46502390-1	chr4	46502290	46502490	+	799.0	f1_balb.idr	intron (NM_053179, intron 5 of 5)	intron (NM_053179, intron 5 of 5)	13061.0	NM_053179	94181.0	Mm.249349	NM_053179	ENSMUSG00000028334	Nans	4632418E04Rik|BB056474|Sas	N-acetylneuraminic acid synthase (sialic acid synthase)	protein-coding	-0.244500626163425	-0.230365440734443	-0.0574128226255587	-0.238570517724251	0.482871018057147	-0.229321095473637	0.229768599762428	-0.23794637929031	2.91559130174114	0.224423959440453	1
Merged-chr2-43675427-2	chr2	43675327	43675527	+	651.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289593, intron 12 of 12)	intron (NM_001289593, intron 12 of 12)	-73397.0	NM_001301832	76117.0	Mm.217350	NM_153820	ENSMUSG00000049744	Arhgap15	5830480G12Rik	Rho GTPase activating protein 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-100449724-5	chr15	100449685	100449885	+	787.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19226.0	NM_001357983	68614.0	Mm.275272	NM_134093	ENSMUSG00000037353	Letmd1	1110019O13Rik|AI593524|BB130465|BB235638|HCCR-2|HCCR1|MCC-32|Mccr	LETM1 domain containing 1	protein-coding	2.08022050079785	2.32953810218445	2.01789783318775	2.08266619713589	1.88408414747672	1.33053436599024	2.15762520801176	2.29785209800992	-0.409531942804742	0.666784437135123	0.992515300319318
Merged-chr10-43723405-2	chr10	43723305	43723505	+	710.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22753.0	NR_040581	69443.0	Mm.484042	NR_040581	ENSMUSG00000111422	1700027J07Rik	-	RIKEN cDNA 1700027J07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-34690604-4	chr16	34690527	34690727	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172824)	promoter-TSS (NM_172824)	11.0	NM_172824	239839.0	Mm.272045	NM_172824	ENSMUSG00000022833	Ccdc14	G630039H03Rik	coiled-coil domain containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166329674-2	chr2	166329574	166329774	+	659.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55766.0	NR_033467	670775.0	Mm.384326	NR_033467	ENSMUSG00000084840	Gm11468	-	predicted gene 11468	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25782592-6	chr7	25782388	25782588	+	718.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009465, intron 4 of 19)	RLTR20A4|LTR|ERVK	6245.0	NM_001190974	26362.0	Mm.4128	NM_009465	ENSMUSG00000002602	Axl	AI323647|Ark|Tyro7|Ufo	AXL receptor tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-137823413-4	chr5	137823326	137823526	+	824.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001005426)	TTS (NM_001005426)	12852.0	NM_153510	231805.0	Mm.379385	NM_153510	ENSMUSG00000046245	Pilra	AV021745|FDF03	paired immunoglobin-like type 2 receptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-105047036-4	chr3	105046950	105047150	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030249, intron 1 of 5)	intron (NM_030249, intron 1 of 5)	5903.0	NM_001163332	80281.0	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-43580018-4	chr7	43579913	43580113	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357769, intron 1 of 3)	intron (NM_001357769, intron 1 of 3)	427.0	NM_001357769	210105.0	Mm.234422	NM_172482	ENSMUSG00000030469	Zfp719	8030458J18|9430094P17Rik|C630016O21Rik|mszf6	zinc finger protein 719	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56473662-4	chr17	56473563	56473763	+	808.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252455, intron 1 of 27)	intron (NM_001252455, intron 1 of 27)	2817.0	NM_001252455	19280.0	Mm.258771	NM_011218	ENSMUSG00000013236	Ptprs	AL022616|PTP|PTP-NU3|PTPNU-3|PTPsigma|Ptpt9|R-PTP-S|RPTPsigma	protein tyrosine phosphatase, receptor type, S	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-91455563-1	chr1	91455463	91455663	+	708.0	f0_c57.idr	intron (NM_011066, intron 1 of 22)	intron (NM_011066, intron 1 of 22)	3765.0	NM_011066	18627.0	Mm.482463	NM_011066	ENSMUSG00000055866	Per2	mKIAA0347|mPer2	period circadian clock 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-6226551-1	chr2	6226451	6226651	+	641.0	f1_c57bl6.idr	intron (NR_040333, intron 1 of 6)	intron (NR_040333, intron 1 of 6)	-13557.0	NM_024208	67856.0	Mm.38342	NM_024208	ENSMUSG00000039063	Echdc3	2310005D12Rik|AI662097	enoyl Coenzyme A hydratase domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6278897-4	chr19	6278829	6279029	+	890.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010119, intron 1 of 4)	intron (NM_010119, intron 1 of 4)	2033.0	NM_010119	13660.0	Mm.30169	NM_010119	ENSMUSG00000024772	Ehd1	AA409636|Past1|RME-1	EH-domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-85653634-3	chr15	85653507	85653707	+	876.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50166.0	NR_110483	102800312.0	Mm.33117	NR_110483		Lncppara	Lincppara|Mirlet7bhg|linc-Ppara	long noncoding RNA near Ppara	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-8647399-6	chr4	8647298	8647498	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-43008.0	NM_001277149	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	2.43939848630849	1.45991705975863	4.28149183911297	1.64197828880213	3.42940149885462	2.49820038184623	4.55888243266541	2.30777907988587	0.767274719236909	0.586894962932342	0.967957151188163
Merged-chr8-120740179-2	chr8	120740079	120740279	+	822.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301811, intron 2 of 8)	intron (NM_001301811, intron 2 of 8)	1540.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-103593143-2	chr5	103593043	103593243	+	547.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011204, intron 45 of 47)	intron (NM_011204, intron 45 of 47)	36260.0	NM_029415	75750.0	Mm.7446	NM_029415	ENSMUSG00000029321	Slc10a6	8430417G17Rik|C78479|Soat	solute carrier family 10 (sodium/bile acid cotransporter family), member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-116241602-3	chr9	116241544	116241744	+	953.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52464.0	NR_152204	100043817.0	Mm.404276	NR_152204		Gm4668	-	predicted gene 4668	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-62392567-4	chr15	62392453	62392653	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-173102.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126554201-4	chr7	126554108	126554308	+	956.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146200, intron 15 of 20)	RSINE1|SINE|B4	12158.0	NM_146200	56347.0	Mm.22776	NM_146200	ENSMUSG00000030738	Eif3c	110kDa|3230401O13Rik|Eif3s8|NIPIL(A3)|NipilA3|Xs|Xsl	eukaryotic translation initiation factor 3, subunit C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132608901-2	chr4	132608801	132609001	+	874.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-30145.0	NM_210071	14050.0	Mm.227733	NM_010166	ENSMUSG00000028886	Eya3	AI844637	EYA transcriptional coactivator and phosphatase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98859217-4	chr11	98859033	98859233	+	823.700012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4465.0	NM_197940	68524.0	Mm.28661	NM_197940	ENSMUSG00000038013	Wipf2	1110014J05Rik|5730509C05Rik|AA407487|Gm1176|Wich|Wire	WAS/WASL interacting protein family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-43542049-1	chr6	43541949	43542149	+	633.0	f0_balb.idr	intron (NM_013861, intron 4 of 8)	intron (NM_013861, intron 4 of 8)	99620.0	NR_045988	319812.0	Mm.446393	NR_045988		9430018G01Rik	-	RIKEN cDNA 9430018G01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-57440757-3	chr9	57440636	57440836	+	897.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357914)	promoter-TSS (NM_001357914)	-622.0	NM_001357916	66812.0	Mm.250508	NM_176831	ENSMUSG00000063849	Ppcdc	1810057I13Rik|8430432M10Rik	phosphopantothenoylcysteine decarboxylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-95950897-3	chr13	95950735	95950935	+	735.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58913.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-64758812-3	chr18	64758693	64758893	+	651.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-97793.0	NM_001001488	54670.0	Mm.270043	NM_001001488	ENSMUSG00000039529	Atp8b1	AI451886|FIC1|Ic	ATPase, class I, type 8B, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-32300739-4	chr11	32300635	32300835	+	725.108337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175000, exon 3 of 3)	exon (NM_175000, exon 3 of 3)	666.0	NM_175000	216635.0	Mm.338482	NM_175000	ENSMUSG00000020295	Hbq1a	A230090E05Rik|Gm876|Hbq1|Hbqt2	hemoglobin, theta 1A	protein-coding	2.85945124658247	3.07951857231526	1.53947324062432	1.24442749941313	1.79896041712288	2.33733011211809	2.25539158627717	2.18219993518625	-0.601505315098068	0.539804673043444	0.954403851908463
Merged-chr11-118169672-2	chr11	118169572	118169772	+	682.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001112700, intron 11 of 12)	B4A|SINE|B4	-40453.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-136469781-4	chr4	136469685	136469885	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024452)	promoter-TSS (NM_024452)	24.0	NM_024452	269593.0	Mm.485824	NM_024452	ENSMUSG00000001089	Luzp1	2700072H04Rik|AI266952|Luzp|mFLJ00226	leucine zipper protein 1	protein-coding	6.57379313573629	5.57503043240054	5.58908433450165	6.78425011624564	6.54984671846506	5.54517312248673	5.85906562522923	6.57722618377535	-0.0408208176381984	0.89644071241455	0.998431161219273
Merged-chr4-55353210-3	chr4	55353121	55353321	+	777.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009011, intron 1 of 9)	intron (NM_009011, intron 1 of 9)	3179.0	NM_009011	19359.0	Mm.196846	NM_009011	ENSMUSG00000028426	Rad23b	0610007D13Rik|AV001138|HR23B|mHR23B|p58	RAD23 homolog B, nucleotide excision repair protein	protein-coding	0.816386650183934	0.65381332651879	0.910692321247233	0.611789257034722	0.585487027818346	1.19760948378355	0.452670450526362	0.615015525329638	0.00103468068048616	0.999467381244447	1
Merged-chr6-54022558-4	chr6	54022448	54022648	+	861.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17384.0	NM_001163640	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	1.03735096283717	1.18499418249299	0.843471395237581	0.822990424121373	0.793576487558128	0.666289726911937	1.14838138945396	1.50147474735552	0.464606014091327	0.742958147609172	0.998431161219273
Merged-chr11-100694484-2	chr11	100694384	100694584	+	607.333374	f1_balb.idr|f1_c57bl6.idr	TTS (NM_030150)	TTS (NM_030150)	9787.0	NM_030150	80861.0	Mm.271830	NM_030150	ENSMUSG00000017830	Dhx58	B430001I08Rik|D11Lgp2e|LPG2|Lgp2|RLR-3	DEXH (Asp-Glu-X-His) box polypeptide 58	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-77816219-4	chr11	77816094	77816294	+	980.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291213, intron 2 of 40)	intron (NM_001291213, intron 2 of 40)	14896.0	NM_001291215	360013.0	Mm.341248	NM_011586	ENSMUSG00000000631	Myo18a	MAJN|MyoPDZ|MysPDZ|SP-R210	myosin XVIIIA	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-13933514-2	chr10	13933414	13933614	+	821.25	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32561.0	NM_001358783	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	4.34851807586281	4.49396077810044	4.48397956895496	3.99695721275994	3.03547792052014	2.56651601429192	3.51021467551433	1.63771890863799	-2.18329033295741	0.000157325426701546	0.00446590805102165
Merged-chr13-73603398-2	chr13	73603298	73603498	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146047)	promoter-TSS (NM_146047)	-604.0	NM_146047	218335.0	Mm.30099	NM_146047	ENSMUSG00000021610	Clptm1l	C130052I12Rik|Crr9	CLPTM1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-94657978-2	chr15	94657878	94658078	+	844.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_178789, intron 2 of 7)	intron (NM_178789, intron 2 of 7)	28793.0	NM_178789	320709.0	Mm.74873	NM_178789	ENSMUSG00000063296	Tmem117	B930062P21Rik	transmembrane protein 117	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124864076-2	chr6	124863976	124864176	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355257)	promoter-TSS (NM_001355257)	-93.0	NM_001355257	14788.0	Mm.2514	NM_013533	ENSMUSG00000038390	Gpr162	A-2|BC031437|Grca	G protein-coupled receptor 162	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-60528415-4	chr3	60528294	60528494	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253711, intron 1 of 7)	intron (NM_001253711, intron 1 of 7)	27215.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-66978865-3	chr3	66978785	66978985	+	759.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302358)	promoter-TSS (NM_001302358)	-74.0	NM_001302358	20429.0	Mm.39093	NM_013665	ENSMUSG00000027833	Shox2	6330543G17Rik|OG12|Og12x|Prx3|SHOT	short stature homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-77515853-4	chr10	77515732	77515932	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133998)	promoter-TSS (NM_133998)	-19.0	NM_133998	108707.0	Mm.259547	NM_133998	ENSMUSG00000032977	Fam207a	1810008A18Rik|AI303072	family with sequence similarity 207, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-105778607-4	chr7	105778489	105778689	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162943, intron 1 of 20)	intron (NM_001162943, intron 1 of 20)	8961.0	NM_001162943	233651.0	Mm.334108	NM_001162943	ENSMUSG00000036862	Dchs1	3110041P15Rik|C130033F22Rik|CDH25|FIB1|Gm165|PCDH16	dachsous cadherin related 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21221713-4	chr9	21221619	21221819	+	916.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	17613.0	NM_016679	50868.0	Mm.248266	NM_016679	ENSMUSG00000003308	Keap1	INRF2|mKIAA0132	kelch-like ECH-associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81129127-4	chr10	81129003	81129203	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7168.0	NM_010731	16969.0	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-86503692-4	chr6	86503590	86503790	+	977.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15463.0	NR_040292	381792.0	Mm.333223	NR_040292	ENSMUSG00000101655	2310040G24Rik	-	RIKEN cDNA 2310040G24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-96949350-1	chr5	96949250	96949450	+	779.0	f0_balb.idr	Intergenic	URR1A|DNA|hAT-Charlie	28078.0	NR_131152	666266.0	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	-2.18138529563533	-2.15523716995652	-2.1631445789866	-2.16963996020037	-2.05513010215571	-2.15352360143315	-2.16135451490766	-2.16847729006863	0.759018020146679	0.829933115115583	1
Merged-chr10-117455695-2	chr10	117455595	117455795	+	831.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-8260.0	NR_152734	102634600.0	Mm.399106	NR_152734	ENSMUSG00000112344	Gm32141	-	predicted gene, 32141	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-6525557-3	chr15	6525429	6525629	+	782.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-54318.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52602248-4	chr13	52602129	52602329	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011518, intron 1 of 13)	Tigger17a|DNA|TcMar-Tigger	5347.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44772909-4	chr9	44772820	44773020	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023831)	promoter-TSS (NM_023831)	-89.0	NM_023831	76568.0	Mm.278597	NM_023831	ENSMUSG00000002031	Ift46	1500035H01Rik|AA408110|AI663846|R75047|c11orf2	intraflagellar transport 46	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-153899877-4	chr1	153899777	153899977	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_106194)	promoter-TSS (NR_106194)	-49.0	NR_106194	102466257.0		NR_106194	ENSMUSG00000099227	Mir8114	Gm27382|mmu-mir-8114	microRNA 8114	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-12923984-4	chr2	12923877	12924077	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001305436)	promoter-TSS (NM_001305436)	-64.0	NM_008961	19212.0	Mm.229322	NM_008961	ENSMUSG00000026730	Pter	AI790318|Mpr56-1	phosphotriesterase related	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-149056042-4	chr4	149055949	149056149	+	889.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019781, intron 2 of 8)	intron (NM_019781, intron 2 of 8)	43763.0	NM_019781	56273.0	Mm.184172	NM_019781	ENSMUSG00000028975	Pex14	Pex14p|R75137	peroxisomal biogenesis factor 14	protein-coding	2.68051470108437	4.10241843077277	2.25456801864504	2.8445169362678	4.38419693316442	4.00533586554812	3.94079068180732	3.62606391159531	1.26339088729608	0.0352778069043893	0.265757509777436
Merged-chr2-33871072-3	chr2	33870974	33871174	+	674.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175184, intron 2 of 9)	intron (NM_175184, intron 2 of 9)	16872.0	NM_175184	72543.0	Mm.254914	NM_175184	ENSMUSG00000038740	Mvb12b	2610200O14Rik|2610528K11Rik|AI414895|Fam125b	multivesicular body subunit 12B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91522698-4	chr16	91522608	91522808	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4836.0	NR_105786	102465190.0		NR_105786	ENSMUSG00000099308	Mir6367	Gm27467|mmu-mir-6367	microRNA 6367	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-25401728-4	chr14	25401612	25401812	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57473.0	NM_001310666	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-111545665-3	chr8	111545607	111545807	+	768.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168623, intron 1 of 4)	B1_Mm|SINE|Alu	7364.0	NM_001168623	170737.0	Mm.271578	NM_133206	ENSMUSG00000033545	Znrf1	B830022L21Rik|Rnf42|Zrfp1|nin283	zinc and ring finger 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-50997292-4	chr14	50997146	50997346	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10505.0	NM_001162863	75019.0	Mm.318775	NM_029145	ENSMUSG00000021872	Rnase10	4930474F22Rik|Rah1	ribonuclease, RNase A family, 10 (non-active)	protein-coding	4.30228166827888	4.11701146045051	4.82902487038879	3.64022075128711	4.72758646304357	3.11789456441767	4.86192333717268	3.74055926619486	0.0127352054409048	0.979859715659178	0.998431161219273
Merged-chr11-107340175-2	chr11	107340075	107340275	+	858.875	f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 1 of 9)	B4A|SINE|B4	130545.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-25590920-2	chr9	25590820	25591020	+	630.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 6 of 7)	intron (NM_026189, intron 6 of 7)	109323.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-116060112-2	chr9	116060012	116060212	+	684.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028638, intron 14 of 14)	intron (NM_028638, intron 14 of 14)	115251.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-113738102-4	chr11	113738001	113738201	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163346, intron 1 of 1)	intron (NM_001163346, intron 1 of 1)	13059.0	NM_020006	56699.0	Mm.293378	NM_020006	ENSMUSG00000041598	Cdc42ep4	1500041M20Rik|Borg4|CEP4	CDC42 effector protein (Rho GTPase binding) 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-154934195-3	chr4	154934096	154934296	+	858.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6119.0	NM_178931	230979.0	Mm.215147	NM_178931	ENSMUSG00000042333	Tnfrsf14	Atar|HveA|Hvem|Tnfrs14	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106366521-2	chr11	106366421	106366621	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8305.0	NM_029345	75573.0	Mm.159539	NM_029345	ENSMUSG00000009210	Prr29	2310007L24Rik	proline rich 29	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-137953359-4	chr3	137953260	137953460	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011932, intron 3 of 8)	intron (NM_011932, intron 3 of 8)	28189.0	NM_001310753	26377.0	Mm.254835	NM_011932	ENSMUSG00000028159	Dapp1	Bam32	dual adaptor for phosphotyrosine and 3-phosphoinositides 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-78352445-4	chr10	78352373	78352573	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053014)	promoter-TSS (NM_053014)	-773.0	NM_053014	28169.0	Mm.141230	NM_053014	ENSMUSG00000001211	Agpat3	AW061257|AW493985|D10Jhu12e|lpaat3	1-acylglycerol-3-phosphate O-acyltransferase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-20562455-4	chr13	20562353	20562553	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198093, intron 1 of 6)	MIR3|SINE|MIR	89463.0	NM_198093	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-152008224-3	chr4	152008133	152008333	+	794.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033352)	promoter-TSS (NM_001033352)	-658.0	NM_001033352	242785.0	Mm.22306	NM_001033352	ENSMUSG00000073700	Klhl21	1810045K06Rik|D330008A20|mKIAA0469	kelch-like 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-13028437-2	chr17	13028337	13028537	+	828.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-6307.0	NR_155514	102639918.0	Mm.374192	NR_155514		Gm36117	-	predicted gene, 36117	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-4231700-2	chr8	4231600	4231800	+	696.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_028175, exon 2 of 3)	exon (NM_028175, exon 2 of 3)	4873.0	NM_028175	72267.0	Mm.25479	NM_028175	ENSMUSG00000046589	Lrrc8e	1810049O03Rik|C87354	leucine rich repeat containing 8 family, member E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-10952567-4	chr4	10952451	10952651	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	55068.0	NM_175175	71801.0	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-38985115-1	chr6	38985015	38985215	+	560.0	f1_balb.idr	intron (NM_011539, intron 4 of 12)	intron (NM_011539, intron 4 of 12)	66129.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-97537959-1	chr16	97537859	97538059	+	1000.0	f1_balb.idr	intron (NM_013606, intron 1 of 13)	intron (NM_013606, intron 1 of 13)	1876.0	NM_013606	17858.0	Mm.14157	NM_013606	ENSMUSG00000023341	Mx2	AI528743|Mx-2	MX dynamin-like GTPase 2	protein-coding	-0.429165910719733	-0.873612895455471	-0.880042310359133	-0.882147047040279	-0.515285789036623	-0.870994549976101	-0.879439369138014	-0.881779851595733	-0.36230783815378	0.907723332250447	1
Merged-chr2-26747630-3	chr2	26747543	26747743	+	849.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx10|LINE|L1	15923.0	NM_001359164	105244099.0		NM_001359164		Gm39773	LCN16	predicted gene, 39773	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-157368220-2	chr2	157368120	157368320	+	968.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_026968, intron 1 of 2)	MER44B|DNA|TcMar-Tigger	626.0	NM_026968	69161.0	Mm.228619	NM_026968	ENSMUSG00000063019	Manbal	1810024K12Rik|AI836500	mannosidase, beta A, lysosomal-like	protein-coding	2.38549325169893	2.58086155947657	1.33476260907571	2.42060938874112	2.71050102076726	2.60030564107615	1.34244147334662	2.32766837663797	0.186440853032134	0.848960747783077	0.998431161219273
Merged-chr11-96318602-4	chr11	96318476	96318676	+	973.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010459, exon 1 of 2)	5' UTR (NM_010459, exon 1 of 2)	309.0	NM_010459	15412.0	Mm.3546	NM_010459	ENSMUSG00000038692	Hoxb4	Hox-2.6	homeobox B4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70595172-3	chr8	70595064	70595264	+	909.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_023627, exon 4 of 11)	exon (NM_023627, exon 4 of 11)	683.0	NM_023627	71780.0	Mm.29357	NM_023627	ENSMUSG00000019139	Isyna1	1300017C10Rik|AU018670	myo-inositol 1-phosphate synthase A1	protein-coding	0.473752675583548	0.979011123696933	0.33969923505426	0.88604929371536	0.325682644930267	0.990535000859931	0.341353346710433	0.508236764759706	-0.708753601052342	0.690125145164295	1
Merged-chr10-62549930-4	chr10	62549832	62550032	+	967.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22487.0	NM_001358965	19073.0	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-18251515-2	chr16	18251415	18251615	+	742.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357146, intron 6 of 11)	intron (NM_001357146, intron 6 of 11)	2632.0	NM_001081000	15547.0	Mm.271798	NM_008307	ENSMUSG00000022721	Trmt2a	Htf9c	TRM2 tRNA methyltransferase 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-34862629-4	chr6	34862529	34862729	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_197986)	promoter-TSS (NM_197986)	-517.0	NM_197986	68487.0	Mm.248440	NM_197986	ENSMUSG00000057137	Tmem140	1110007F12Rik	transmembrane protein 140	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44722225-1	chr9	44722125	44722325	+	557.0	f1_balb.idr	intron (NM_153537, intron 4 of 21)	B3|SINE|B2	12973.0	NM_153537	102693.0	Mm.28639	NM_153537	ENSMUSG00000048537	Phldb1	AU041016|D330037A14Rik|Ll5a	pleckstrin homology like domain, family B, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-75563233-3	chr12	75563154	75563354	+	728.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012024, intron 2 of 13)	intron (NM_012024, intron 2 of 13)	32946.0	NM_012024	26932.0	Mm.259626	NM_012024	ENSMUSG00000021051	Ppp2r5e	4633401M22Rik|AI449017|B56beta	protein phosphatase 2, regulatory subunit B', epsilon	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-11559023-2	chr8	11558923	11559123	+	758.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001302459, intron 1 of 1)	intron (NM_001302459, intron 1 of 1)	613.0	NM_001302459	26356.0	Mm.25709	NM_011919	ENSMUSG00000045969	Ing1	2610028J21Rik|AA407184|AI875420|mING1h|p33Ing1|p37Ing1b	inhibitor of growth family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-79441648-4	chr14	79441545	79441745	+	988.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10190.0	NM_001034882	432879.0	Mm.308666	NM_001034882	ENSMUSG00000075502	Kbtbd6	EG432879|Gm5465|Zbtbd6	kelch repeat and BTB (POZ) domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-55005775-2	chr11	55005675	55005875	+	578.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_138556, intron 8 of 24)	intron (NR_138556, intron 8 of 24)	27696.0	NR_138556	11749.0	Mm.265347	NM_013472	ENSMUSG00000018340	Anxa6	AW107198|Anx6|AnxVI|Cabm|Camb	annexin A6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-25349908-2	chr16	25349808	25350008	+	717.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175165, intron 3 of 5)	intron (NM_175165, intron 3 of 5)	63091.0	NM_175165	71338.0	Mm.126851	NM_175165	ENSMUSG00000048399	Tprg	5430420C16Rik|Tprg1	transformation related protein 63 regulated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-145045294-2	chr7	145045194	145045394	+	712.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-105369.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-75649215-3	chr7	75649113	75649313	+	712.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 8 of 36)	intron (NM_029332, intron 8 of 36)	193679.0	NM_029332	75547.0	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-31217792-2	chr5	31217690	31217890	+	745.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008014, intron 1 of 9)	intron (NM_008014, intron 1 of 9)	2755.0	NM_008014	14208.0	Mm.14501	NM_008014	ENSMUSG00000029147	Ppm1g	AI385652|Fin13	protein phosphatase 1G (formerly 2C), magnesium-dependent, gamma isoform	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34349597-4	chr17	34349503	34349703	+	895.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4958.0	NM_010381	100504404.0	Mm.15680	NM_010381		H2-Ea-ps	AI323765|E-alpha-f|H-2Ea|H2-Ea|I-Ealpha|Ia-3|Ia3|MHC-H2-Ea	histocompatibility 2, class II antigen E alpha, pseudogene	protein-coding	4.04521892148346	3.41684393574104	3.401771477362	4.7484712410036	4.25101918077725	3.05111721242237	3.99879051052746	4.0032831958842	-0.179105450655797	0.734863960479496	0.998431161219273
Merged-chr11-106150428-2	chr11	106150328	106150528	+	870.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011947, intron 12 of 15)	intron (NM_011947, intron 12 of 15)	9499.0	NM_001356459	67803.0	Mm.21687	NM_172397	ENSMUSG00000040699	Limd2	0610025L06Rik|AI413966	LIM domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36302552-2	chr1	36302452	36302652	+	612.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5181.0	NM_001172206	214855.0	Mm.34316	NM_145996	ENSMUSG00000037447	Arid5a	D430024K22Rik|Mrf1	AT rich interactive domain 5A (MRF1-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129590941-2	chr2	129590828	129591028	+	856.2000119999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1911.0	NM_001291020	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	-0.820095337968538	-0.810992159820244	-0.814206172322431	-0.656770695015105	-0.265493124171896	-0.808275858600872	-0.813570452351274	-0.654164138467236	2.09884761037068	0.455927072897513	1
Merged-chr2-155757074-3	chr2	155756967	155757167	+	883.805542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16A|LTR|ERVL	5850.0	NM_011171	19124.0	Mm.3243	NM_011171	ENSMUSG00000027611	Procr	AI325044|Ccca|Ccd41|Epcr	protein C receptor, endothelial	protein-coding	-0.751221285118541	-0.888343578643529	-0.896236055383535	-0.149430170358548	-0.902349630920144	-0.885498297691879	-0.895513012698068	-0.898324906258	-3.13084946361618	0.290811707281626	1
Merged-chr7-39518684-4	chr7	39518576	39518776	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004139, intron 1 of 3)	ID_B1|SINE|B4	910.0	NM_001004139	70227.0	Mm.333800	NM_001004139	ENSMUSG00000068959	Zfp619	3000002G13Rik	zinc finger protein 619	protein-coding	4.58375012101551	5.39578829590064	4.68899653794041	4.0465492768897	3.73677806362377	5.10739448104284	4.12846383795756	3.4189635889313	-0.646262801009237	0.175890037647681	0.645775639984829
Merged-chr10-34198280-4	chr10	34198170	34198370	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172508, intron 1 of 5)	intron (NM_172508, intron 1 of 5)	9281.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91855917-4	chr16	91855808	91856008	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110275, intron 23 of 28)	intron (NM_001110275, intron 23 of 28)	75722.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-35753099-2	chr18	35752999	35753199	+	619.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-12545.0	NM_001289592	72512.0	Mm.45995	NM_028261	ENSMUSG00000024349	Tmem173	2610307O08Rik|ERIS|MPYS|Mita|STING	transmembrane protein 173	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-95840126-4	chr10	95840021	95840221	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-100542.0	NM_001001932	216238.0	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-72405516-2	chr1	72405416	72405616	+	572.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	98095.0	NM_001357519	22596.0	Mm.246952	NM_009533	ENSMUSG00000026187	Xrcc5	AI314015|CTC85|CTCBF|Ku80|Ku86	X-ray repair complementing defective repair in Chinese hamster cells 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-17359489-1	chr6	17359389	17359589	+	607.0	f0_balb.idr	Intergenic	Intergenic	51849.0	NM_001243064	12389.0	Mm.28278	NM_007616	ENSMUSG00000007655	Cav1	Cav|Cav-1	caveolin 1, caveolae protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-61022011-4	chr9	61021911	61022111	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5b|LINE|L1	4942.0	NR_040767	330956.0	Mm.207985	NR_040767	ENSMUSG00000111290	Gm5122	A430102L10	predicted gene 5122	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-124672999-2	chr4	124672899	124673099	+	798.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15353.0	NM_011141	18991.0	Mm.297371	NM_011141	ENSMUSG00000090125	Pou3f1	Oct-6|Oct6|Otf-6|Otf6|Scip|Test1|Tst-1|Tst1	POU domain, class 3, transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81603022-4	chr10	81602908	81603108	+	974.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TC)n|Simple_repeat|Simple_repeat	-2108.0	NM_001346695	114606.0	Mm.206764	NM_053254	ENSMUSG00000034758	Tle6	1810057E06Rik|Grg6	transducin-like enhancer of split 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-184735266-4	chr1	184735168	184735368	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2775.0	NM_008250	15284.0	Mm.1347	NM_008250	ENSMUSG00000039377	Hlx	Hlx1	H2.0-like homeobox	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-31219289-2	chr5	31219189	31219389	+	562.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008014, intron 1 of 9)	(A)n|Simple_repeat|Simple_repeat	1256.0	NM_008014	14208.0	Mm.14501	NM_008014	ENSMUSG00000029147	Ppm1g	AI385652|Fin13	protein phosphatase 1G (formerly 2C), magnesium-dependent, gamma isoform	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-104296921-3	chr7	104296798	104296998	+	804.944458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8792.0	NM_001310602	667823.0	Mm.482375	NM_001310602	ENSMUSG00000060441	Trim5	EG667823|Gm8833	tripartite motif-containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-84309195-2	chr3	84309095	84309295	+	574.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A1|LTR|ERVL-MaLR	-4420.0	NM_001271726	80890.0	Mm.44876	NM_030706	ENSMUSG00000027993	Trim2	mKIAA0517|narf	tripartite motif-containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70475667-2	chr11	70475567	70475767	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	-15683.0	NM_023158	66102.0	Mm.425692	NM_023158	ENSMUSG00000018920	Cxcl16	0910001K24Rik|AV290116|BB024863|CXCL16v1|CXCL16v2|SR-PSOX|Zmynd15|b2b498Clo	chemokine (C-X-C motif) ligand 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-17977856-4	chr13	17977745	17977945	+	965.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15506.0	NM_025904	67008.0	Mm.252918	NM_025904	ENSMUSG00000075054	Yae1d1	1600012F09Rik	Yae1 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-136623336-4	chr5	136623249	136623449	+	891.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-55859.0	NM_001291238	13047.0	Mm.320317	NM_009986	ENSMUSG00000029705	Cux1	CDP|Cutl1|Cux|Cux-1	cut-like homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-89118452-2	chr2	89118352	89118552	+	771.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE-int|LTR|ERVL-MaLR	-5942.0	NM_146902	258904.0	Mm.330377	NM_146902	ENSMUSG00000075102	Olfr1221	MOR233-3	olfactory receptor 1221	protein-coding	0.46711586159296	0.502202792661736	1.02303744044072	1.69959543021522	0.796485280227151	0.504723277047588	1.03418718688367	0.683023661602818	-1.21223786567638	0.454136957856156	0.919120493489568
Merged-chr3-79150837-2	chr3	79150712	79150912	+	691.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-4937.0	NM_001099624	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	-1.84456824087626	-1.81369603968745	-1.82303204814395	-1.83070092346192	-1.84240106943552	-1.51787681909439	-1.82091858046888	-1.82932819844659	1.64481029852639	0.639921510788462	1
Merged-chr2-84530283-2	chr2	84530183	84530383	+	685.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-23410.0	NR_046046	672763.0	Mm.491046	NR_046046	ENSMUSG00000087362	Gm13710	-	predicted gene 13710	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-51915724-4	chr11	51915616	51915816	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51915.0	NM_029976	52626.0	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-35583577-4	chr5	35583476	35583676	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001357020, exon 1 of 19)	5' UTR (NM_001357020, exon 1 of 19)	542.0	NM_030721	80911.0	Mm.291503	NM_030721	ENSMUSG00000029098	Acox3	BI685180|EST-s59|PCOX	acyl-Coenzyme A oxidase 3, pristanoyl	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-82399160-3	chr8	82399015	82399215	+	802.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr	intron (NM_001254747, intron 1 of 7)	intron (NM_001254747, intron 1 of 7)	3471.0	NM_001254747	16168.0	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	-0.997540169838772	-0.978590902270682	-0.991157157510519	-0.993556727375279	-0.996947071237203	-0.330909171284168	-0.797902940985175	-0.993138032165001	3.02916026761537	0.318278610605222	1
Merged-chr5-118468243-3	chr5	118468153	118468353	+	878.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-92466.0	NM_001347445	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-123254820-2	chr4	123254720	123254920	+	627.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21264.0	NM_013905	56198.0	Mm.103615	NM_013905	ENSMUSG00000032744	Heyl	Hey3|Hrt3|bHLHb33|hesr3	hairy/enhancer-of-split related with YRPW motif-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-29255713-2	chr19	29255613	29255813	+	798.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008413, intron 2 of 24)	intron (NM_008413, intron 2 of 24)	3910.0	NM_008413	16452.0	Mm.275839	NM_008413	ENSMUSG00000024789	Jak2	Fd17	Janus kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126499720-2	chr8	126499620	126499820	+	605.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24655.0	NM_001159907	212728.0	Mm.482479	NM_001159907	ENSMUSG00000090290	Tarbp1	Gm17296|Gm179	TAR RNA binding protein 1	protein-coding	1.87196015289712	1.26540110892714	2.89528007940899	2.10823933893921	1.88814748487429	1.27252414227337	2.61341198948278	2.5295278305505	0.0131009282311954	0.989955080754326	0.998431161219273
Merged-chr11-61832630-2	chr11	61832530	61832730	+	590.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013881, intron 7 of 26)	ORR1E|LTR|ERVL-MaLR	22462.0	NM_013881	29869.0	Mm.162025	NM_013881	ENSMUSG00000004798	Ulk2	A830085I22Rik|AU015340|Unc51.2|mKIAA0623	unc-51 like kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-41801518-3	chr13	41801421	41801621	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145875, intron 4 of 6)	intron (NM_001145875, intron 4 of 6)	45967.0	NM_175417	109254.0	Mm.25195	NM_175417	ENSMUSG00000058022	Adtrp	9530008L14Rik	androgen dependent TFPI regulating protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-34386729-4	chr1	34386615	34386815	+	657.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20C|LTR|ERVK	46484.0	NR_039562	100628580.0		NR_039562	ENSMUSG00000092852	Mir5103	mir-5103|mmu-mir-5103|mu-mir-5103	microRNA 5103	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28908045-2	chr17	28907945	28908145	+	824.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_172450, intron 3 of 11)	intron (NM_172450, intron 3 of 11)	2780.0	NR_045457	74179.0	Mm.248931	NR_045457	ENSMUSG00000085333	1700030A11Rik	-	RIKEN cDNA 1700030A11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-136123219-4	chr4	136123141	136123341	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20581.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-21384256-1	chr17	21384156	21384356	+	616.0	f1_c57bl6.idr	intron (NM_172486, intron 1 of 3)	(CAA)n|Simple_repeat|Simple_repeat	508.0	NM_172486	210503.0	Mm.33443	NM_172486	ENSMUSG00000062743	Zfp677	A830058L05Rik|Tce8	zinc finger protein 677	protein-coding	1.20372789169761	2.2057628619875	1.05144831240613	1.73358331369427	2.20053539278284	1.07868033251638	1.8015022176041	2.07143305484237	0.622126503068789	0.600027074606897	0.972767071588175
Merged-chr10-118081118-2	chr10	118080981	118081181	+	677.666626	f0_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-60706.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	2.13079967243509	1.97931526415285	2.42444429607504	1.68962317757131	1.77863837675482	2.81264576601853	1.2811242247335	2.70730894737621	0.515466311188486	0.596322768044648	0.971586575449917
Merged-chr11-96075846-4	chr11	96075761	96075961	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161419)	promoter-TSS (NM_001161419)	-167.0	NM_007506	11951.0	Mm.258	NM_007506	ENSMUSG00000006057	Atp5g1	-	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C1 (subunit 9)	protein-coding	4.59915307295072	5.10221374943621	5.19651961157084	4.25688441486689	5.08304854325121	5.24765853475109	5.16534827114633	4.39169097386212	0.209812826964325	0.562097912796559	0.960362415684079
Merged-chr5-33272573-2	chr5	33272473	33272673	+	605.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001198860, intron 1 of 9)	intron (NM_001198860, intron 1 of 9)	2431.0	NM_001310535	13016.0	Mm.7286	NM_013502	ENSMUSG00000037373	Ctbp1	BARS|CtBP3/BARS|D4S115h|D5H4S115|D5H4S115E	C-terminal binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-100029632-2	chr6	100029532	100029732	+	800.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	257726.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-104051178-3	chr8	104051088	104051288	+	826.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50437.0	NM_009868	12562.0	Mm.21767	NM_009868	ENSMUSG00000031871	Cdh5	7B4|AA408225|Cd144|VE-Cad|VECD|VEcad|Vec	cadherin 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-107353303-2	chr1	107353203	107353403	+	554.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC2|LINE|L1	-9011.0	NM_025867	66957.0	Mm.12638	NM_025867	ENSMUSG00000026327	Serpinb11	2310046M08Rik|AU015399	serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), member 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-94688245-2	chr11	94688145	94688345	+	791.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	-10752.0	NM_145828	217119.0	Mm.100638	NM_145828	ENSMUSG00000020868	Xylt2	E030002B02Rik|XT-II|XT2|xylT-II	xylosyltransferase II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3085625-3	chr4	3085531	3085731	+	646.083313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-86452.0	NM_001167534	100312470.0	Mm.480297	NM_001167534	ENSMUSG00000115072	Vmn1r2	Gm11776	vomeronasal 1 receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-12158788-2	chr17	12158688	12158888	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026644, intron 2 of 8)	intron (NM_026644, intron 2 of 8)	39504.0	NM_026644	68262.0	Mm.258300	NM_026644	ENSMUSG00000023827	Agpat4	1500003P24Rik	1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-128925157-4	chr4	128925057	128925257	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	37298.0	NM_172875	242669.0	Mm.215814	NM_172875	ENSMUSG00000028789	Azin2	4933429I20Rik|Adc|Azi2|B930082O19|ODC-p|Odcp	antizyme inhibitor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-46596419-2	chr18	46596319	46596519	+	749.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025698, intron 1 of 2)	intron (NM_025698, intron 1 of 2)	1116.0	NM_025698	66676.0	Mm.296043	NM_025698	ENSMUSG00000033184	Tmed7	3930401E15Rik|5830493P14Rik|AU044611|AW545765|TRAM	transmembrane p24 trafficking protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-166409840-4	chr1	166409740	166409940	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001142948)	promoter-TSS (NM_001142948)	-12.0	NM_175170	71592.0	Mm.192094	NM_175170	ENSMUSG00000040596	Pogk	9130401E23Rik|BASS2|mKIAA1513	pogo transposable element with KRAB domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-81233069-4	chr13	81232942	81233142	+	965.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 85 of 89)	MIR|SINE|MIR	268968.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-25082373-1	chr18	25082273	25082473	+	564.0	f1_balb.idr	intron (NM_001289654, intron 14 of 24)	intron (NM_001289654, intron 14 of 24)	83592.0	NM_001142697	66648.0	Mm.263189	NM_001004361	ENSMUSG00000024269	Tpgs2	5730437P09Rik|5730494M16Rik|AI666318|Pgs2	tubulin polyglutamylase complex subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-110525910-4	chr9	110525817	110526017	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010628)	TTS (NM_010628)	-6680.0	NM_001081340	235626.0	Mm.288949	NM_001081340	ENSMUSG00000044791	Setd2	4921524K10Rik|BC031601|KMT3A	SET domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-3247523-3	chr11	3247427	3247627	+	849.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_037301, intron 1 of 1)	intron (NR_037301, intron 1 of 1)	18936.0	NM_007879	13494.0	Mm.3250	NM_007879	ENSMUSG00000020457	Drg1	AA408859|AI132520|DRG-1|NEDD-3|Nedd3	developmentally regulated GTP binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-119058656-2	chr10	119058556	119058756	+	708.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8157.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-12626252-4	chr13	12626161	12626361	+	986.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_003568, intron 2 of 6)	intron (NR_003568, intron 2 of 6)	24134.0	NR_003568	664862.0	Mm.415635	NR_003568		Gpr137b-ps	2310041G17Rik	G protein-coupled receptor 137B, pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-14352767-2	chr14	14352667	14352867	+	932.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_008369, intron 10 of 11)	intron (NM_008369, intron 10 of 11)	6272.0	NM_008369	16188.0	Mm.425857	NM_008369	ENSMUSG00000068758	Il3ra	CD123|CDw123|SUT-1	interleukin 3 receptor, alpha chain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-75392468-3	chr18	75392332	75392532	+	900.244446	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042660, intron 3 of 3)	intron (NM_001042660, intron 3 of 3)	25067.0	NM_001042660	17131.0	Mm.34407	NM_008543	ENSMUSG00000025880	Smad7	Madh7	SMAD family member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-58452460-4	chr10	58452365	58452565	+	757.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011240, intron 2 of 28)	intron (NM_011240, intron 2 of 28)	5613.0	NM_011240	19386.0	Mm.431695	NM_011240	ENSMUSG00000003226	Ranbp2	A430087B05Rik|AI256741|NUP358	RAN binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101393604-2	chr7	101393504	101393704	+	713.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198096)	promoter-TSS (NM_198096)	-784.0	NM_198096	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191259314-4	chr1	191259201	191259401	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	34847.0	NR_151547	100504360.0	Mm.16927	NM_001033188		D730003I15Rik	AU020850	RIKEN cDNA D730003I15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-172311485-6	chr1	172311424	172311624	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080419)	promoter-TSS (NM_080419)	-843.0	NM_080419	140559.0	Mm.271717	NM_080419	ENSMUSG00000038034	Igsf8	ESTM34|EWI-2|KCT-4|PGRL	immunoglobulin superfamily, member 8	protein-coding	2.69623150852702	3.39746680142143	4.02498415383366	4.16935820937048	5.05336675123187	5.26320756690907	5.35302416870566	5.31972235037383	1.97484768295516	1.64642500712209e-06	9.94319156146857e-05
Merged-chr5-21355048-5	chr5	21354930	21355130	+	782.4571530000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029195, intron 2 of 18)	intron (NM_029195, intron 2 of 18)	-17643.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114790910-2	chr11	114790810	114791010	+	859.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001102615)	TTS (NM_001102615)	4982.0	NM_028055	72014.0	Mm.38347	NM_028055	ENSMUSG00000000202	Btbd17	1500005I02Rik|Tango10a	BTB (POZ) domain containing 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135203420-4	chr4	135203328	135203528	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	69332.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-105972518-3	chr12	105972392	105972592	+	741.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	-37771.0	NM_011705	22367.0	Mm.2981	NM_011705	ENSMUSG00000021115	Vrk1	51PK	vaccinia related kinase 1	protein-coding	1.28131188477968	1.23119627010481	1.41537898604656	1.46085465132669	0.965215100164283	0.692971291206012	0.68166536751138	0.671907500933958	-3.26942798042135	0.0397971463466091	0.283992562569359
Merged-chr10-52331100-3	chr10	52331024	52331224	+	737.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51000.0	NM_053187	94221.0	Mm.390258	NM_053187	ENSMUSG00000019861	Gopc	2210402P09Rik|AI844555|CAL|FIG|GOPC1|PIST	golgi associated PDZ and coiled-coil motif containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-28316390-2	chr6	28316290	28316490	+	545.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-54789.0	NM_001081678	627049.0	Mm.84441	NM_001081678	ENSMUSG00000039841	Zfp800	AA407452|Znf800	zinc finger protein 800	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-4840247-4	chr12	4840141	4840341	+	850.116699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016863, intron 1 of 3)	intron (NM_016863, intron 1 of 3)	1354.0	NM_016863	14226.0	Mm.20453	NM_016863	ENSMUSG00000020635	Fkbp1b	12.6kDa|AW494148|FKBP12.6|calstabin2	FK506 binding protein 1b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-172586587-4	chr1	172586455	172586655	+	900.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029084, intron 2 of 4)	intron (NM_029084, intron 2 of 4)	4013.0	NM_029084	74748.0	Mm.179812	NM_029084	ENSMUSG00000053318	Slamf8	5830408F06Rik|Blame|SBBI42	SLAM family member 8	protein-coding	4.93358678041346	4.29246889535687	5.01089691081405	4.26935126057763	4.28577812408302	3.55314820803046	4.78930887783499	3.51553587230791	-0.674414463181327	0.131615856938025	0.567486961503026
Merged-chr13-52035937-4	chr13	52035833	52036033	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60808.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19285014-2	chr7	19284914	19285114	+	899.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013648, intron 1 of 9)	URR1A|DNA|hAT-Charlie	2390.0	NM_013648	20167.0	Mm.24142	NM_013648	ENSMUSG00000030401	Rtn2	MMS10-P|Ms10p|NSPLI|Nspl1	reticulon 2 (Z-band associated protein)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-50737300-2	chr16	50737199	50737399	+	622.5	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-4526.0	NR_028300	68190.0	Mm.139089	NR_028300		Dubr	5330426P16Rik|Dum	Dppa2 upstream binding RNA	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-59227002-4	chr11	59226911	59227111	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007476, intron 1 of 4)	intron (NM_007476, intron 1 of 4)	1151.0	NM_001130408	11840.0	Mm.371546	NM_007476	ENSMUSG00000048076	Arf1	-	ADP-ribosylation factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-110743878-2	chr10	110743778	110743978	+	611.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-1561.0	NM_001358560	52679.0	Mm.11747	NM_178609	ENSMUSG00000020185	E2f7	A630014C11Rik|D10Ertd739e|E2F-7	E2F transcription factor 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-50930476-4	chr14	50930423	50930623	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310507, intron 1 of 5)	CpG	326.0	NM_001310506	219024.0	Mm.239117	NM_001033271	ENSMUSG00000035953	Tmem55b	BC039161|Pip4p1	transmembrane protein 55b	protein-coding	5.36823734859126	4.72036381162708	4.27441195926348	4.9974998057854	5.95493805000164	4.7532510648263	5.26185927340432	5.05481782410375	0.51175896528915	0.164901737564503	0.629157636410506
Merged-chr3-154692485-2	chr3	154692385	154692585	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18648.0	NM_175176	209601.0	Mm.331454	NM_175176	ENSMUSG00000078161	Erich3	1700013E18Rik|4922501L14Rik|5031409G23Rik|AI596448|Gm133	glutamate rich 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-94788983-4	chr13	94788915	94789115	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009321)	promoter-TSS (NM_009321)	72.0	NM_009321	21371.0	Mm.379025	NM_009321	ENSMUSG00000042043	Tbca	Tbca13	tubulin cofactor A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-114855864-2	chr5	114855764	114855964	+	871.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026263, intron 1 of 11)	intron (NM_026263, intron 1 of 11)	2150.0	NM_026263	67593.0	Mm.251409	NM_026263	ENSMUSG00000029564	4930519G04Rik	1700014B12Rik	RIKEN cDNA 4930519G04 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-107313824-1	chr4	107313724	107313924	+	657.333313	f0_balb.idr	promoter-TSS (NM_145550)	promoter-TSS (NM_145550)	-539.0	NM_145550	230584.0	Mm.29118	NM_145550	ENSMUSG00000057375	Yipf1	C030002N13Rik	Yip1 domain family, member 1	protein-coding	0.97099019093881	1.04332649685946	1.89587220055537	2.36923304629422	2.03509411793059	1.04836638336104	2.026664018825	1.72476573422238	0.114555419832867	0.927759874765165	0.998431161219273
Merged-chr8-70562000-3	chr8	70561905	70562105	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007924, intron 1 of 11)	intron (NM_007924, intron 1 of 11)	22330.0	NM_007924	13716.0	Mm.271973	NM_007924	ENSMUSG00000070002	Ell	Ell1|Men	elongation factor RNA polymerase II	protein-coding	2.84098712899575	2.77092018987086	3.07252707143659	2.35074080701123	2.59890473305404	3.19791349036677	2.91486521391947	2.36257752214181	0.035902753918744	0.959250764502513	0.998431161219273
Merged-chr5-36466096-4	chr5	36465988	36466188	+	864.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024478, intron 1 of 3)	intron (NM_024478, intron 1 of 3)	903.0	NM_024478	17713.0	Mm.21535	NM_024478	ENSMUSG00000029198	Grpel1	AA408748|mt-GrpE#1|mt-Grpel1	GrpE-like 1, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-103236313-2	chr15	103236213	103236413	+	820.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358950, intron 1 of 4)	intron (NM_001358950, intron 1 of 4)	3539.0	NM_001358950	12419.0	Mm.262059	NM_007626	ENSMUSG00000009575	Cbx5	2610029O15Rik|C75991|HP1|Hp1a|Hp1alpha	chromobox 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91262584-2	chr2	91262484	91262684	+	560.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028733, intron 6 of 10)	intron (NM_028733, intron 6 of 10)	-2531.0	NM_001166024	77038.0	Mm.43636	NM_023854	ENSMUSG00000027255	Arfgap2	2310032E02Rik|Zfp289	ADP-ribosylation factor GTPase activating protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-116446886-4	chr7	116446777	116446977	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3419.0	NM_011083	18704.0	Mm.3810	NM_011083	ENSMUSG00000030660	Pik3c2a	Cpk-m|PI3KC2	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-34770752-4	chr11	34770681	34770881	+	935.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033374, intron 1 of 51)	intron (NM_033374, intron 1 of 51)	13124.0	NM_033374	94176.0	Mm.380679	NM_033374	ENSMUSG00000020143	Dock2	AI662014|AW122239|CED-5|Hch|MBC	dedicator of cyto-kinesis 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-89174540-2	chr15	89174440	89174640	+	861.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159521)	promoter-TSS (NM_001159521)	-589.0	NM_001159521	140570.0	Mm.267514	NM_138749	ENSMUSG00000036606	Plxnb2	Debt|plexin-B2	plexin B2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-65644042-2	chr7	65643942	65644142	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172310)	promoter-TSS (NM_172310)	-856.0	NM_172310	272396.0	Mm.35127	NM_172310	ENSMUSG00000030515	Tarsl2	A530046H20Rik	threonyl-tRNA synthetase-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-37307985-4	chr19	37307882	37308082	+	918.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031156, intron 10 of 23)	L1M5|LINE|L1	22631.0	NM_031156	15925.0	Mm.28366	NM_031156	ENSMUSG00000056999	Ide	1300012G03Rik|4833415K22Rik|AA675336|AI507533	insulin degrading enzyme	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-84630402-2	chr18	84630302	84630502	+	649.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177450, intron 6 of 11)	intron (NM_177450, intron 6 of 11)	19693.0	NM_177450	338403.0	Mm.23278	NM_177450	ENSMUSG00000056162	Cndp1	AI746433|Cn1	carnosine dipeptidase 1 (metallopeptidase M20 family)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-13583853-4	chr3	13583771	13583971	+	901.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357034, intron 1 of 7)	L1_Mus2|LINE|L1	68994.0	NR_040598	75203.0	Mm.490940	NR_040598		4930539N22Rik	-	RIKEN cDNA 4930539N22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-37165417-4	chr14	37165306	37165506	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30084.0	NM_078478	66092.0	Mm.182912	NM_078478	ENSMUSG00000041028	Ghitm	1010001P14Rik|C77840|MICS1|PTD010|Tmbim5	growth hormone inducible transmembrane protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-88005144-4	chr1	88005037	88005237	+	804.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033291, intron 2 of 27)	intron (NM_001033291, intron 2 of 27)	3414.0	NM_001198573	227334.0	Mm.80484	NM_001033291	ENSMUSG00000005501	Usp40	B230215L03Rik|C730029K03	ubiquitin specific peptidase 40	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-78829617-1	chr17	78829517	78829717	+	891.0	f1_c57bl6.idr	exon (NM_001081179, exon 5 of 36)	exon (NM_001081179, exon 5 of 36)	5764.0	NM_001081179	320473.0	Mm.46309	NM_028084	ENSMUSG00000039414	Heatr5b	2010013B10Rik|A230048G03Rik|AV071430|D330050P16Rik|mKIAA1414	HEAT repeat containing 5B	protein-coding	3.23197809547209	3.12307488651018	1.27903357779171	3.24706128212437	1.83755695430476	1.88065364495207	2.18014055816042	1.52548295300718	-2.19769766793064	0.0170365519633756	0.159276273083049
Merged-chr4-22421045-2	chr4	22420945	22421145	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172988, intron 6 of 8)	intron (NM_172988, intron 6 of 8)	63502.0	NR_104380	269514.0	Mm.40708	NM_172988	ENSMUSG00000040410	Fbxl4	AI836810|FBL4|FBL5	F-box and leucine-rich repeat protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-74295164-7	chr17	74295054	74295254	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133771)	promoter-TSS (NM_133771)	-291.0	NM_133771	76890.0	Mm.311874	NM_133771	ENSMUSG00000058704	Memo1	0610016J10Rik|D930048L02Rik	mediator of cell motility 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-7571734-4	chr9	7571632	7571832	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310717, intron 1 of 9)	intron (NM_001310717, intron 1 of 9)	336.0	NM_001310717	234911.0	Mm.334940	NM_001030289	ENSMUSG00000070323	Mmp27	Gm180	matrix metallopeptidase 27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71537539-4	chr8	71537440	71537640	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198095)	promoter-TSS (NM_198095)	-103.0	NM_198095	69550.0	Mm.260325	NM_198095	ENSMUSG00000046718	Bst2	2310015I10Rik|Bst-2|C87040|CD317|DAMP-1|GREG	bone marrow stromal cell antigen 2	protein-coding	5.00269883945537	4.8194091883623	6.07158860856727	5.67832756804243	5.47596404804738	5.13354304636249	5.73229411662473	5.23211147636234	-0.0817586908345414	0.80387261140092	0.998431161219273
Merged-chr3-127762073-4	chr3	127761982	127762182	+	828.299988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027808, intron 1 of 13)	intron (NM_027808, intron 1 of 13)	18445.0	NM_027808	71481.0	Mm.158704	NM_027808	ENSMUSG00000028028	Alpk1	8430410J10Rik|LAK	alpha-kinase 1	protein-coding	2.02005793190078	2.02350480906175	1.46847971035306	2.22472144853692	1.69933708656717	1.71959910009209	2.48500565532437	1.77817612710603	0.0130642757222361	0.989307870801334	0.998431161219273
Merged-chr1-74507467-2	chr1	74507367	74507567	+	614.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021383, intron 1 of 7)	intron (NM_021383, intron 1 of 7)	1407.0	NM_021383	58184.0	Mm.291708	NM_021383	ENSMUSG00000026174	Cnot9	2610007F23Rik|AI593551|Fl10|Rqcd1	CCR4-NOT transcription complex, subunit 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-117219044-4	chr4	117218951	117219151	+	982.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145637, intron 7 of 12)	intron (NM_001145637, intron 7 of 12)	32866.0	NM_001145637	381544.0	Mm.23504	NM_001033774	ENSMUSG00000060268	Armh1	1700012C08Rik|Gm1661|Gm1662|Ncrna00082	armadillo-like helical domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21728540-4	chr9	21728434	21728634	+	997.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252659, intron 1 of 17)	RMER4B|LTR|ERVK	4958.0	NM_010700	16835.0	Mm.3213	NM_010700	ENSMUSG00000032193	Ldlr	Hlb301	low density lipoprotein receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-48428991-2	chr6	48428777	48428977	+	812.5	f0_balb.idr|f1_balb.idr	intron (NM_001085417, intron 4 of 4)	intron (NM_001085417, intron 4 of 4)	16213.0	NM_001085415	68910.0	Mm.2464	NM_020589	ENSMUSG00000068551	Zfp467	1190001I08Rik|AB041616|AI426952|AV017623|EZI|MNCb-3350|Znf467	zinc finger protein 467	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-87261652-4	chr12	87261569	87261769	+	712.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142581, intron 2 of 18)	MTC|LTR|ERVL-MaLR	2575.0	NM_134044	104799.0	Mm.208750	NM_134044	ENSMUSG00000021038	Vipas39	6720456H09Rik|9330175H22Rik|AI413782|SPE-39|Spe39|Vipar|hSPE-39	VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-37452350-5	chr13	37452254	37452454	+	840.2666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	107009.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	2.09243895011381	2.04946966085674	1.15750822781892	1.80703657284065	2.11023231834911	1.93747025039149	1.73519620365497	1.35682588910189	-0.0426903986511148	0.968279840604734	0.998431161219273
Merged-chr16-55698725-4	chr16	55698606	55698806	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	123432.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-87616569-1	chr3	87616469	87616669	+	572.0	f1_balb.idr	promoter-TSS (NM_001003912)	promoter-TSS (NM_001003912)	-990.0	NM_001360197	213498.0	Mm.287267	NM_001003912	ENSMUSG00000041977	Arhgef11	PDZ-RhoGEF|Prg|RhoGEF|mKIAA0380	Rho guanine nucleotide exchange factor (GEF) 11	protein-coding	1.12900155115882	0.286895188759372	0.278293127695911	0.271593072296344	0.262025168499632	0.975486963358775	0.280198176606776	0.978882017798974	0.57424555979881	0.774462878085718	1
Merged-chr14-103682563-1	chr14	103682463	103682663	+	590.0	f0_balb.idr	intron (NM_198014, intron 2 of 6)	intron (NM_198014, intron 2 of 6)	16869.0	NR_045148	70898.0	Mm.27548	NR_045148	ENSMUSG00000089707	Slain1os	4921525B02Rik	SLAIN motif family, member 1, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-51068869-2	chr14	51068769	51068969	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	2573.0	NM_207558	404319.0	Mm.377276	NM_207558	ENSMUSG00000035932	Olfr750	GA_x5J8B7W5WBF-6267395-6266441|GA_x6K02T2PMLR-6808276-6807281|MOR103-18	olfactory receptor 750	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114912292-2	chr11	114912192	114912392	+	971.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	AT_rich|Low_complexity|Low_complexity	22094.0	NM_001347651	217304.0	Mm.185355	NM_199221	ENSMUSG00000063193	Cd300lb	CLM-7|Clm7|Gm253|LMIR5	CD300 molecule like family member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180250263-4	chr1	180250150	180250350	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001128605, intron 1 of 10)	intron (NM_001128605, intron 1 of 10)	-4300.0	NM_011183	19165.0	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-55809483-1	chr16	55809383	55809583	+	935.0	f0_balb.idr	Intergenic	Intergenic	12655.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-3333485-2	chr2	3333385	3333585	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001013376)	promoter-TSS (NM_001013376)	-857.0	NM_001013376	227522.0	Mm.293948	NM_001013376	ENSMUSG00000049950	Rpp38	C330006A15Rik	ribonuclease P/MRP 38 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-69721935-4	chr3	69721822	69722022	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133787)	promoter-TSS (NM_133787)	-133.0	NM_133787	97112.0	Mm.21062	NM_133787	ENSMUSG00000027787	Nmd3	C87860	NMD3 ribosome export adaptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-75195738-4	chr14	75195634	75195834	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008879, intron 2 of 16)	intron (NM_008879, intron 2 of 16)	-46553.0	NM_019775	56373.0	Mm.24242	NM_019775	ENSMUSG00000021999	Cpb2	1110032P04Rik|4930405E17Rik|AI255929|CPR|Cpu|TAFI	carboxypeptidase B2 (plasma)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-34781003-2	chr11	34780903	34781103	+	674.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_033374, intron 1 of 51)	MLT1J|LTR|ERVL-MaLR	2902.0	NM_033374	94176.0	Mm.380679	NM_033374	ENSMUSG00000020143	Dock2	AI662014|AW122239|CED-5|Hch|MBC	dedicator of cyto-kinesis 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-137861569-2	chr3	137861469	137861669	+	596.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-2918.0	NM_001316995	51788.0	Mm.117541	NM_016750	ENSMUSG00000037894	H2afz	H2A.Z|H2a.z-1	H2A histone family, member Z	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-64941696-4	chr14	64941605	64941805	+	937.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177338, intron 1 of 9)	intron (NM_177338, intron 1 of 9)	8152.0	NM_177338	219150.0	Mm.344074	NM_177338	ENSMUSG00000021972	Hmbox1	AI451877|AI604847|F830020C16Rik	homeobox containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-82353819-1	chr15	82353719	82353919	+	697.0	f1_c57bl6.idr	intron (NM_025987, intron 1 of 2)	intron (NM_025987, intron 1 of 2)	472.0	NM_025987	67130.0	Mm.27570	NM_025987	ENSMUSG00000022450	Ndufa6	14kDa|2700038D15Rik|B230217P19Rik	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 6 (B14)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-118004701-2	chr2	118004598	118004798	+	628.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_126479, intron 8 of 9)	ORR1E|LTR|ERVL-MaLR	106504.0	NR_126479	329496.0	Mm.235844	NR_126479	ENSMUSG00000087203	Gm13986	C230060E24	predicted gene 13986	ncRNA	-0.0158065297312044	0.0111234945486545	0.00245760947288415	0.944652884358338	-0.0140822830287179	0.0130571058661452	0.00438149577379865	1.11715532306202	0.389082634604634	0.863052770284642	1
Merged-chr1-168362658-4	chr1	168362568	168362768	+	819.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183355, intron 2 of 8)	intron (NM_183355, intron 2 of 8)	69501.0	NM_001291509	18514.0	Mm.43358	NM_008783	ENSMUSG00000052534	Pbx1	2310056B04Rik|D230003C07Rik|Pbx-1	pre B cell leukemia homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-48167273-4	chr17	48167167	48167367	+	935.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113556)	promoter-TSS (NM_001113556)	-10.0	NM_178796	328830.0	Mm.470939	NM_178796	ENSMUSG00000043939	A530064D06Rik	Trem4|pdctrem	RIKEN cDNA A530064D06 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-10834836-2	chr8	10834736	10834936	+	649.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47618.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-33645540-2	chr2	33645440	33645640	+	624.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_046275, exon 3 of 3)	non-coding (NR_046275, exon 3 of 3)	4347.0	NR_046275	100504399.0	Mm.72070	NM_177842		C130021I20Rik	-	Riken cDNA C130021I20 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-93304804-1	chr13	93304704	93304904	+	841.0	f1_c57bl6.idr	5' UTR (NM_001284189, exon 1 of 9)	5' UTR (NM_001284189, exon 1 of 9)	1047.0	NM_011982	26556.0	Mm.37533	NM_011982	ENSMUSG00000007617	Homer1	PSD-Zip45|SYN47|Ves-1|homer-1|vesl-1	homer scaffolding protein 1	protein-coding	0.657217657138354	0.310290949269956	1.90822543024347	0.282960494523064	0.265254258767891	1.42035850930024	0.298471466950428	0.285100089366261	-1.06346083030291	0.746620689109114	0.998431161219273
Merged-chr4-129914422-2	chr4	129914322	129914522	+	572.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8196.0	NR_045190	319894.0	Mm.59196	NR_045190	ENSMUSG00000086369	E330017L17Rik	-	RIKEN cDNA E330017L17 gene	ncRNA	0.0146066039415324	0.255304148148796	0.029839145555982	0.0241507593469536	0.656182491039265	0.0387852297818703	0.0314572149398452	1.07214271792721	3.42915603483346	0.109502092260988	1
Merged-chr10-81543826-2	chr10	81543726	81543926	+	715.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010301, intron 1 of 6)	intron (NM_010301, intron 1 of 6)	1220.0	NM_010301	14672.0	Mm.260925	NM_010301	ENSMUSG00000034781	Gna11	Dsk7|E430025L19	guanine nucleotide binding protein, alpha 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-53429344-2	chr11	53429244	53429444	+	593.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025352, intron 1 of 1)	B3|SINE|B2	1487.0	NM_025352	22272.0	Mm.251621	NM_025352	ENSMUSG00000044894	Uqcrq	1100001F06Rik|1500040F11Rik|5830407L17Rik|9.5kDa|AA959903|QP-C|Qpc|Uqcrb|c1502	ubiquinol-cytochrome c reductase, complex III subunit VII	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-136685487-4	chr1	136685405	136685605	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045325, intron 1 of 2)	intron (NR_045325, intron 1 of 2)	1876.0	NR_045325	100503460.0	Mm.30630	NR_045324	ENSMUSG00000097113	Gm19705	-	predicted gene, 19705	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-63498691-4	chr15	63498567	63498767	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19059.0	NR_045279	432958.0	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-182560428-2	chr1	182560328	182560528	+	704.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4579.0	NM_001145806	170725.0	Mm.189201	NM_130890	ENSMUSG00000038599	Capn8	nCL-2|nCL-2'	calpain 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-97489497-2	chr15	97489397	97489597	+	616.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	216325.0	NM_028003	71919.0	Mm.12255	NM_028003	ENSMUSG00000022466	Rpap3	2310042P20Rik|D15Ertd682e	RNA polymerase II associated protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-16214509-2	chr4	16214409	16214609	+	597.166687	f1_balb.idr|f1_c57bl6.idr	intron (NR_045765, intron 3 of 6)	MTE2b|LTR|ERVL-MaLR	50399.0	NR_045765	100415915.0	Mm.387180	NR_045765	ENSMUSG00000085112	A530072M11Rik	-	RIKEN cDNA gene A530072M11	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-10536741-2	chr5	10536641	10536841	+	634.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-328288.0	NR_003596	623849.0	Mm.335888	NR_003596	ENSMUSG00000091422	Gm6455	EG623849	predicted gene 6455	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-93750680-4	chr16	93750557	93750757	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357118, intron 6 of 35)	intron (NM_001357118, intron 6 of 35)	20558.0	NM_001357118	70028.0	Mm.23230	NM_026700	ENSMUSG00000022946	Dopey2	0610038M01Rik|2610510B01Rik|AI503246|C21orf5|mKIAA0933	dopey family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-32693993-3	chr12	32693876	32694076	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR33|LTR|ERVK	-126359.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78528965-2	chr15	78528865	78529065	+	578.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001204152, intron 1 of 3)	intron (NM_001204152, intron 1 of 3)	686.0	NM_001204153	72709.0	Mm.34776	NM_028331	ENSMUSG00000022440	C1qtnf6	2810036M19Rik|CTRP6	C1q and tumor necrosis factor related protein 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-42034880-1	chr11	42034780	42034980	+	619.0	f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	-34166.0	NM_008073	14406.0	Mm.5309	NM_008073	ENSMUSG00000020436	Gabrg2	GABAA-R|Gabrg-2|gamma2	gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	protein-coding	-1.84370019007128	-1.66877396961587	-1.82250853902154	-1.83005472565269	-1.84156768960994	-1.81133110542633	-1.82042888315889	-1.68415604098269	0.0376840119903871	0.991491645451152	1
Merged-chr12-112947545-2	chr12	112947445	112947645	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5403.0	NM_001316724	66174.0	Mm.7070	NM_025399	ENSMUSG00000002804	Nudt14	1110030M18Rik|UGPPase	nudix (nucleoside diphosphate linked moiety X)-type motif 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141871166-4	chr4	141871055	141871255	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025994, intron 1 of 3)	intron (NM_025994, intron 1 of 3)	3765.0	NM_025994	27984.0	Mm.395598	NM_025994	ENSMUSG00000040659	Efhd2	2600015J22Rik|AA408606|D4Wsu27e	EF hand domain containing 2	protein-coding	6.51219056429185	6.68010091691618	6.69078461075717	7.23789036089273	6.47160318853063	6.52463837175266	6.32076979807945	6.45187025560279	-0.389484344842041	0.0606792930788793	0.364501080621025
Merged-chr15-31648228-3	chr15	31648068	31648268	+	865.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR78|LTR|ERV1	46052.0	NM_001356313	68073.0	Mm.119185	NM_026546	ENSMUSG00000039065	Fam173b	A930016P21Rik|AA987072	family with sequence similarity 173, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-122598617-4	chr6	122598516	122598716	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001134391, intron 2 of 7)	RLTR14|LTR|ERV1	3828.0	NM_031159	11810.0	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-4431862-1	chr10	4431762	4431962	+	1000.0	f1_balb.idr	promoter-TSS (NM_024261)	promoter-TSS (NM_024261)	526.0	NM_025343	66084.0	Mm.153111	NM_025343	ENSMUSG00000019763	Rmnd1	0610042C05Rik|AA408137|AI462664|AW536662	required for meiotic nuclear division 1 homolog	protein-coding	0.665530511801404	1.5567956483018	0.694670741809269	1.3269528193658	1.45707907719284	0.711562295594181	0.697737699776425	1.79937619817622	0.517027319139491	0.743497267112766	0.998431161219273
Merged-chr3-95511970-4	chr3	95511870	95512070	+	936.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12760.0	NM_007802	13038.0	Mm.272085	NM_007802	ENSMUSG00000028111	Ctsk	AI323530|MMS10-Q|Ms10q|catK	cathepsin K	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-148682384-4	chr2	148682308	148682508	+	811.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355689, intron 1 of 5)	intron (NM_001355689, intron 1 of 5)	1288.0	NM_028986	74533.0	Mm.136913	NM_028986	ENSMUSG00000027439	Gzf1	8430437G08Rik|Zfp336|mGZF1	GDNF-inducible zinc finger protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-30505145-2	chr15	30505045	30505245	+	586.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355502, intron 3 of 21)	MLT2B3|LTR|ERVL	332552.0	NM_008729	18163.0	Mm.321648	NM_008729	ENSMUSG00000022240	Ctnnd2	Catnd2|Nprap|neurojugin	catenin (cadherin associated protein), delta 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119495343-1	chr11	119495243	119495443	+	547.0	f1_c57bl6.idr	intron (NM_001164636, intron 2 of 8)	intron (NM_001164636, intron 2 of 8)	3723.0	NM_177394	338371.0	Mm.271946	NM_177394	ENSMUSG00000039850	Endov	A730011L01Rik	endonuclease V	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-135682446-4	chr1	135682342	135682542	+	806.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	-37621.0	NM_001360782	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-39009263-2	chr2	39009163	39009363	+	726.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_028809, intron 1 of 3)	intron (NM_028809, intron 1 of 3)	1124.0	NM_028809	74192.0	Mm.38155	NM_028809	ENSMUSG00000026755	Arpc5l	2010015J01Rik|AI852867|ARC16-2|AW555592|AW742746	actin related protein 2/3 complex, subunit 5-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-160280813-4	chr1	160280709	160280909	+	877.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038621, intron 2 of 8)	intron (NM_001038621, intron 2 of 8)	15163.0	NR_035448	100316784.0		NR_035448	ENSMUSG00000089204	Mir1927	mmu-mir-1927	microRNA 1927	ncRNA	2.35042150743229	2.77831748378511	2.68337086585931	2.91659900466425	2.95297752271148	3.71600723197727	2.8212285875713	2.00962022768504	0.587372857592915	0.422728315586661	0.900322118218157
Merged-chr14-103978985-4	chr14	103978853	103979053	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045953, exon 3 of 3)	non-coding (NR_045953, exon 3 of 3)	48189.0	NR_045953	73877.0	Mm.399172	NR_045953	ENSMUSG00000115727	4930432J09Rik	-	RIKEN cDNA 4930432J09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-69179880-3	chr3	69179787	69179987	+	837.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-42532.0	NM_027843	71619.0	Mm.98122	NM_027843	ENSMUSG00000098207	Arl14	9130014L17Rik|Arf7	ADP-ribosylation factor-like 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-83451197-2	chr8	83451063	83451263	+	587.5	f0_balb.idr|f0_c57.idr	intron (NM_001039137, intron 1 of 3)	intron (NM_001039137, intron 1 of 3)	7233.0	NM_001039137	56367.0	Mm.246911	NM_019708	ENSMUSG00000063253	Scoc	0610011C06Rik|2810002J11Rik|AA415030|SCOCO	short coiled-coil protein	protein-coding	2.49558373291224	2.14536234725816	2.80575746382955	3.42479404338477	2.31578812768509	1.7343060334499	1.67958902824946	2.6476434836776	-1.33210791124048	0.115278273714389	0.531964895394323
Merged-chr2-180102780-2	chr2	180102680	180102880	+	542.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_133849, exon 2 of 3)	exon (NM_133849, exon 2 of 3)	1627.0	NR_102309	99296.0	Mm.285360	NM_133849	ENSMUSG00000039059	Hrh3	AW049250|H3R|HH3R	histamine receptor H3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-104262397-1	chr9	104262297	104262497	+	1000.0	f0_balb.idr	intron (NM_001359740, intron 1 of 56)	CpG	533.0	NM_001359740	235567.0	Mm.217256	NM_001163026	ENSMUSG00000032560	Dnajc13	D030002L11Rik|Gm1124|RME-8|Rme8|mKIAA0678	DnaJ heat shock protein family (Hsp40) member C13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-25527488-3	chr14	25527388	25527588	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 2 of 23)	intron (NM_183208, intron 2 of 23)	-6951.0	NR_037236	100526533.0		NR_037236	ENSMUSG00000093081	Mir3075	mir-3075|mmu-mir-3075	microRNA 3075	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-59053722-2	chr5	59053622	59053822	+	830.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-600724.0	NR_046190	78163.0	Mm.243828	NR_046190	ENSMUSG00000105234	4930459L07Rik	-	RIKEN cDNA 4930459L07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-44511943-2	chr19	44511836	44512036	+	757.833313	f1_balb.idr|f1_c57bl6.idr	exon (NM_011720, exon 6 of 6)	exon (NM_011720, exon 6 of 6)	18464.0	NM_011720	22423.0	Mm.88365	NM_011720	ENSMUSG00000036961	Wnt8b	-	wingless-type MMTV integration site family, member 8B	protein-coding	-0.667543147450544	-0.65831952661807	-0.66135736860609	-0.260289805444673	-0.529204966490427	-0.657632628119559	-0.66068867894781	-0.254793673190986	0.389194164369103	0.887428419764641	1
Merged-chr2-174477331-3	chr2	174477251	174477451	+	891.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4410.0	NM_025531	66390.0	Mm.182294	NM_025531	ENSMUSG00000016257	Prelid3b	2310042G06Rik|AA407013|Slmo2	PRELI domain containing 3B	protein-coding	0.865887220894916	0.738988767429675	1.46605011695339	1.59707865539829	1.34430071993259	0.74160210112616	1.24336439363877	0.907148450858883	-0.593143622100002	0.678336731298043	0.994999283375466
Merged-chr7-35745348-3	chr7	35745245	35745445	+	908.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178704, intron 3 of 18)	intron (NM_178704, intron 3 of 18)	9109.0	NM_178704	233115.0	Mm.257808	NM_178704	ENSMUSG00000043671	Dpy19l3	6030410G08|9330164H19Rik	dpy-19-like 3 (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-99964300-2	chr14	99964200	99964400	+	576.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010636, intron 4 of 6)	intron (NM_010636, intron 4 of 6)	185496.0	NM_010636	16597.0	Mm.396499	NM_010636	ENSMUSG00000072294	Klf12	2700063E05Rik|AI225908|AI315654|AP-2rep|B130052C06Rik|D530033K05Rik	Kruppel-like factor 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-67308641-2	chr2	67308541	67308741	+	753.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	134807.0	NM_001033477	383709.0	Mm.244520	NM_001033477		Gm1322	-	predicted gene 1322	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101133192-4	chr15	101133088	101133288	+	980.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001277259, intron 3 of 11)	intron (NM_001277259, intron 3 of 11)	4666.0	NM_001277257	11482.0	Mm.279542	NM_009612	ENSMUSG00000000530	Acvrl1	AI115505|AI427544|Acvrlk1|Alk1	activin A receptor, type II-like 1	protein-coding	1.69554281207081	1.2360265298859	2.53422749833632	1.93252402128836	2.17490146255713	2.34162360063973	1.21295433311282	2.69898624446442	0.657850113050183	0.534321236884735	0.952851694432678
Merged-chr9-59617221-4	chr9	59617121	59617321	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_038075)	promoter-TSS (NR_038075)	-63.0	NR_038075	67287.0	Mm.439943	NM_029922	ENSMUSG00000025237	Parp6	1700119G14Rik|2310028P13Rik|3110038K10Rik|ARTD17|C030013N01Rik|PARP-6	poly (ADP-ribose) polymerase family, member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-47531299-7	chr9	47531118	47531318	+	914.380981	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	CpG	866.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-100397247-1	chr12	100397147	100397347	+	659.0	f0_c57.idr	intron (NM_001033213, intron 9 of 19)	L1MB7|LINE|L1	120638.0	NR_045741	100038713.0	Mm.470751	NR_045741	ENSMUSG00000113679	Gm10432	-	predicted gene 10432	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80075483-4	chr10	80075405	80075605	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359636)	promoter-TSS (NM_001359636)	-66.0	NM_001359636	216161.0	Mm.262102	NM_183426	ENSMUSG00000035673	Sbno2	BC019206|F730040C21|Sno|Stno	strawberry notch 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-102009884-4	chr5	102009770	102009970	+	974.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_172882, exon 3 of 67)	5' UTR (NM_172882, exon 3 of 67)	60051.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	3.21623875747263	2.46625482204293	2.82453005286923	3.31146322063056	3.171339166989	2.65821322112348	3.87285465738768	3.32803375563789	0.552161496198605	0.387578499139302	0.877169296907698
Merged-chr5-117360745-4	chr5	117360630	117360830	+	946.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021539, intron 1 of 8)	intron (NM_021539, intron 1 of 8)	3425.0	NM_021539	59043.0	Mm.28489	NM_021539	ENSMUSG00000029364	Wsb2	AA673511|Swip2|WSB-2	WD repeat and SOCS box-containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118611316-4	chr9	118611201	118611401	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 1 of 27)	intron (NM_133721, intron 1 of 27)	4592.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-94602635-3	chr8	94602611	94602811	+	994.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028221)	promoter-TSS (NM_028221)	770.0	NM_026274	67610.0	Mm.109074	NM_026274	ENSMUSG00000050079	Rspry1	4930470D19Rik|AI608258	ring finger and SPRY domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-26868901-2	chr18	26868801	26869001	+	696.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1114744.0	NM_001362334	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-101782172-1	chr2	101782072	101782272	+	573.0	f0_balb.idr	intron (NM_001355625, intron 1 of 8)	MTD|LTR|ERVL-MaLR	15535.0	NM_175181	72446.0	Mm.24138	NM_175181	ENSMUSG00000032841	Prr5l	2600010E01Rik|4833411O04Rik|Protor-2|Protor2	proline rich 5 like	protein-coding	2.0126205041124	2.63085290149001	1.39026305838308	2.36511754246487	2.61735909556838	2.93294334366102	2.1972812324741	2.26073957202561	0.790977194018117	0.367900633754867	0.862698441166634
Merged-chr10-67582091-4	chr10	67581982	67582182	+	980.883301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10123.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-42188226-3	chr2	42188128	42188328	+	780.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053011, intron 2 of 90)	intron (NM_053011, intron 2 of 90)	259340.0	NR_105754	102465171.0		NR_105754	ENSMUSG00000098660	Mir6336	Gm27584|mmu-mir-6336	microRNA 6336	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-58904233-4	chr11	58904149	58904349	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011758)	promoter-TSS (NM_011758)	-24.0	NM_011758	22698.0	Mm.127646	NM_011758	ENSMUSG00000037001	Zfp39	CTfin33|Zfp-39	zinc finger protein 39	protein-coding	4.80766861083093	4.49634809430866	5.46926779208639	5.16728478284604	4.94092358354851	5.38916175089083	5.1310195310288	5.30805483540665	0.192168455302696	0.555258409404348	0.959914380895535
Merged-chr8-70376586-6	chr8	70376515	70376715	+	839.361084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016685, intron 8 of 18)	CpG-14088	3067.0	NM_016685	12845.0	Mm.45071	NM_016685	ENSMUSG00000031849	Comp	TSP5	cartilage oligomeric matrix protein	protein-coding	1.05121490586617	0.905101632970708	1.14450973479459	0.858716301447709	1.55342219554306	2.60478676159489	1.55392711941577	2.41843267392027	4.07202123509483	0.00278060954918173	0.042918207595732
Merged-chr15-89475676-2	chr15	89475576	89475776	+	724.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_077233)	promoter-TSS (NR_077233)	-576.0	NR_077233	100532730.0	Mm.461541	NR_077233		C230037L18Rik	-	RIKEN cDNA C230037L18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-119437053-4	chr8	119436947	119437147	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027950)	promoter-TSS (NM_027950)	-115.0	NM_027950	71839.0	Mm.272357	NM_027950	ENSMUSG00000074063	Osgin1	1700012B18Rik|Okl38	oxidative stress induced growth inhibitor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25848195-4	chr7	25848089	25848289	+	949.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31659.0	NM_028775	74134.0	Mm.275188	NM_028775	ENSMUSG00000040703	Cyp2s1	1200011C15Rik|AU041727|C79779	cytochrome P450, family 2, subfamily s, polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-88705474-4	chr9	88705401	88705601	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359992, intron 2 of 2)	intron (NM_001359992, intron 2 of 2)	14086.0	NM_001359992	100039707.0	Mm.347377	NM_001128601	ENSMUSG00000079427	Mthfsl	Gm2382	5, 10-methenyltetrahydrofolate synthetase-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-65185769-4	chr1	65185680	65185880	+	743.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011086)	promoter-TSS (NM_011086)	699.0	NM_001111320	15926.0	Mm.9925	NM_010497	ENSMUSG00000025950	Idh1	AI314845|AI788952|E030024J03Rik|Id-1|Idh-1|Idpc	isocitrate dehydrogenase 1 (NADP+), soluble	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-5362212-4	chr6	5362111	5362311	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21175.0	NM_023048	65255.0	Mm.51340	NM_023048	ENSMUSG00000042607	Asb4	8430401O13Rik|AV117194|AW060255	ankyrin repeat and SOCS box-containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-143056269-2	chr5	143056169	143056369	+	902.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359851, intron 12 of 15)	intron (NM_001359851, intron 12 of 15)	56751.0	NM_207110	108086.0	Mm.381440	NM_080561	ENSMUSG00000045078	Rnf216	2810055G22Rik|AI647468|AU019462|C86502|F830018F18Rik|TRIAD3|UIP83|Ubce7ip1	ring finger protein 216	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31569376-4	chr14	31569301	31569501	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009937, intron 1 of 16)	intron (NM_009937, intron 1 of 16)	7982.0	NM_009937	382864.0	Mm.239821	NM_009937	ENSMUSG00000057606	Colq	A130034K24Rik	collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5703325-2	chr19	5703225	5703425	+	694.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_022012)	TTS (NM_022012)	-1146.0	NM_010609	16530.0	Mm.440033	NM_010609	ENSMUSG00000024936	Kcnk7	2310014G03Rik|Kcnk6|Kcnk8|Knot|Mlk3	potassium channel, subfamily K, member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-5802967-2	chr8	5802867	5803067	+	609.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3_Mus|LINE|L1	-697680.0	NM_011388	20494.0	Mm.3500	NM_011388	ENSMUSG00000023073	Slc10a2	9130221J18Rik|AI605518|ASBT|IBAT|ISBT	solute carrier family 10, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-13574083-9	chr2	13574024	13574224	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011701)	promoter-TSS (NM_011701)	-187.0	NM_011701	22352.0	Mm.268000	NM_011701	ENSMUSG00000026728	Vim	-	vimentin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-38346969-4	chr16	38346879	38347079	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001017429)	promoter-TSS (NM_001017429)	-20.0	NM_001017429	12856.0	Mm.27396	NM_001017429	ENSMUSG00000046516	Cox17	AI037035	cytochrome c oxidase assembly protein 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-6284766-3	chr15	6284668	6284868	+	851.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15021.0	NM_001008702	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-156024639-2	chr1	156024560	156024760	+	861.0	f0_balb.idr|f1_balb.idr	intron (NM_144791, intron 4 of 6)	intron (NM_144791, intron 4 of 6)	10157.0	NM_001160019	208263.0	Mm.211654	NM_144791	ENSMUSG00000026466	Tor1aip1	LAP1|Lap1B	torsin A interacting protein 1	protein-coding	1.96751689867902	2.02229447474731	2.69753723665972	2.23961807230505	1.98486417070185	3.0248690856581	3.60658419185537	3.00047279489891	1.48547876068121	0.0595519215503768	0.361347246170644
Merged-chr17-55950150-2	chr17	55950050	55950250	+	598.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310337)	promoter-TSS (NM_001310337)	-650.0	NM_001310337	240120.0	Mm.441018	NM_146249	ENSMUSG00000062101	Zfp119b	-	zinc finger protein 119b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-104672236-3	chr3	104672145	104672345	+	865.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33581.0	NM_009196	20501.0	Mm.9086	NM_009196	ENSMUSG00000032902	Slc16a1	AL022710|Mct1	solute carrier family 16 (monocarboxylic acid transporters), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-27086718-3	chr8	27086657	27086857	+	679.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054044, intron 1 of 18)	intron (NM_054044, intron 1 of 18)	916.0	NM_054044	78560.0	Mm.87046	NM_054044	ENSMUSG00000031486	Adgra2	8430414O08Rik|9530074E10Rik|Gpr124|Tem5|mKIAA1531	adhesion G protein-coupled receptor A2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-9947155-2	chr19	9947055	9947255	+	556.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33445.0	NR_073181	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-95682545-4	chr10	95682440	95682640	+	930.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-118394.0	NM_001358996	71207.0	Mm.24397	NM_027722	ENSMUSG00000020029	Nudt4	4933436C10Rik|DIPP-2|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P	nudix (nucleoside diphosphate linked moiety X)-type motif 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-119720291-1	chr7	119720191	119720391	+	848.0	f0_balb.idr	intron (NM_145585, intron 2 of 4)	CpG	3328.0	NM_145585	233802.0	Mm.26392	NM_145585	ENSMUSG00000030942	Thumpd1	6330575P11Rik	THUMP domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-111538370-4	chr8	111538267	111538467	+	981.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001168623)	promoter-TSS (NM_001168623)	24.0	NM_001168623	170737.0	Mm.271578	NM_133206	ENSMUSG00000033545	Znrf1	B830022L21Rik|Rnf42|Zrfp1|nin283	zinc and ring finger 1	protein-coding	2.84221901348316	1.21687658668115	1.99067804909767	2.06223404235422	2.50826631858163	1.22376321743956	2.56654613032322	1.41431239616102	-0.196144094667271	0.857738598117256	0.998431161219273
Merged-chr12-80131732-2	chr12	80131632	80131832	+	938.833374	f1_balb.idr|f1_c57bl6.idr	intron (NR_033514, intron 2 of 2)	intron (NR_033514, intron 2 of 2)	1112.0	NR_033514	69548.0	Mm.269712	NR_033514		2310015A10Rik	5330419I17Rik	RIKEN cDNA 2310015A10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-44538901-4	chr11	44538703	44538903	+	878.723816	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166553, intron 3 of 5)	C-rich|Low_complexity|Low_complexity	19426.0	NM_001166553	74315.0	Mm.156771	NM_028862	ENSMUSG00000019189	Rnf145	3732413I11Rik|TMRF1	ring finger protein 145	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-34012180-4	chr11	34012064	34012264	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155520, intron 4 of 4)	intron (NR_155520, intron 4 of 4)	-18971.0	NM_001190886	70357.0	Mm.252514	NM_027398	ENSMUSG00000053519	Kcnip1	KCHIP1|Kchip1.2	Kv channel-interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-40268060-3	chr9	40267970	40268170	+	691.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1146.0	NM_001083917	235281.0	Mm.290083	NM_153522	ENSMUSG00000049281	Scn3b	1110001K16Rik|4833414B02Rik|Scnb3	sodium channel, voltage-gated, type III, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131091029-4	chr1	131090915	131091115	+	885.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008551, intron 1 of 9)	intron (NM_008551, intron 1 of 9)	6828.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-81329973-2	chr7	81329873	81330073	+	752.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008803, intron 20 of 21)	intron (NM_008803, intron 20 of 21)	15261.0	NM_009092	20068.0	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-22358187-3	chr10	22358084	22358284	+	696.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009018, intron 6 of 6)	intron (NM_009018, intron 6 of 6)	-3710.0	NM_020030	56554.0	Mm.458004	NM_020030	ENSMUSG00000078452	Raet1d	RAE-1delta	retinoic acid early transcript delta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-93143419-2	chr4	93143319	93143519	+	725.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	192092.0	NM_026954	69136.0	Mm.171558	NM_026954	ENSMUSG00000054000	Tusc1	2200001D17Rik|TSG-9	tumor suppressor candidate 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-17163647-4	chr19	17163533	17163733	+	972.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181348, intron 9 of 19)	intron (NM_181348, intron 9 of 19)	175872.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-7878242-4	chr15	7878139	7878339	+	893.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081402, intron 17 of 17)	intron (NM_001081402, intron 17 of 17)	62689.0	NM_001301357	14573.0	Mm.4679	NM_010275	ENSMUSG00000022144	Gdnf	AI385739|ATF	glial cell line derived neurotrophic factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80494800-2	chr10	80494700	80494900	+	736.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_139226)	promoter-TSS (NM_139226)	-106.0	NM_139226	246086.0	Mm.250572	NM_139226	ENSMUSG00000045518	Onecut3	OC-3|Oc3	one cut domain, family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-83350809-4	chr17	83350705	83350905	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286567)	promoter-TSS (NM_001286567)	-126.0	NM_001114361	78798.0	Mm.295565	NM_199466	ENSMUSG00000032624	Eml4	4930443C24Rik|AI644019	echinoderm microtubule associated protein like 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-35654328-2	chr18	35654228	35654428	+	915.333374	f1_balb.idr|f1_c57bl6.idr	exon (NM_001270646, exon 1 of 1)	exon (NM_001270646, exon 1 of 1)	871.0	NM_001270646	381148.0	Mm.297784	NM_001270646	ENSMUSG00000073600	Prob1	Gm1614	proline rich basic protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-19898206-4	chr4	19898115	19898315	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175406, intron 2 of 7)	intron (NM_175406, intron 2 of 7)	24351.0	NM_175406	242341.0	Mm.19298	NM_175406	ENSMUSG00000028238	Atp6v0d2	1620401A02Rik|AI324824|V-ATPase	ATPase, H+ transporting, lysosomal V0 subunit D2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-17720398-2	chr10	17720298	17720498	+	561.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2830.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-159187025-4	chr1	159186928	159187128	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45172.0	NM_001360878	26374.0	Mm.328135	NM_011931	ENSMUSG00000040782	Cop1	AI316802|C80879|Rfwd2	COP1, E3 ubiquitin ligase	protein-coding	3.76945230204614	3.23744441058795	3.23695002855214	3.95895524771899	3.74458070808032	3.26187457528196	3.70996206718749	4.08171590330132	0.204910383371447	0.693528724019038	0.997536945022547
Merged-chr11-51263044-4	chr11	51262928	51263128	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007714)	promoter-TSS (NM_007714)	29.0	NM_001358282	193286.0	Mm.80975	NM_177567	ENSMUSG00000045942	BC049762	4930503F14	cDNA sequence BC049762	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-109932358-3	chr2	109932244	109932444	+	816.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172671, intron 1 of 17)	intron (NM_172671, intron 1 of 17)	14697.0	NM_172671	107515.0	Mm.277351	NM_172671	ENSMUSG00000050199	Lgr4	9130225G07|A330106J01Rik|A930009A08Rik|Gpr48	leucine-rich repeat-containing G protein-coupled receptor 4	protein-coding	1.67565730976115	1.02105974671948	0.990072482551594	0.765193267416248	1.95689659699453	1.02794790373273	0.99697013078174	1.28228279541353	0.791990816835152	0.555120991445023	0.959914380895535
Merged-chr7-25226443-2	chr7	25226343	25226543	+	624.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_175436, exon 3 of 3)	3' UTR (NM_175436, exon 3 of 3)	-2280.0	NR_046001	77124.0	Mm.294664	NM_178400	ENSMUSG00000090330	9130221H12Rik	AU016887	RIKEN cDNA 9130221H12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-16755283-1	chr3	16755183	16755383	+	569.0	f1_c57bl6.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-61811.0	NR_153388	102632048.0	Mm.417635	NR_153388		Gm30223	-	predicted gene, 30223	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-43512251-4	chr19	43512147	43512347	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010324, intron 2 of 8)	B3|SINE|B2	12358.0	NM_010324	14718.0	Mm.19039	NM_010324	ENSMUSG00000025190	Got1	AI789014|Got-1|cAspAT|cCAT	glutamic-oxaloacetic transaminase 1, soluble	protein-coding	7.95108106088571	7.92205312510364	7.93441655035263	7.51206813970609	7.71823901784913	7.83740282609268	7.7112864187064	7.50289218377399	-0.150295863285814	0.306412260322651	0.806865344318695
Merged-chr4-58502362-2	chr4	58502262	58502462	+	723.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_172989, intron 2 of 3)	intron (NM_172989, intron 2 of 3)	-2959.0	NM_001290486	14745.0	Mm.4772	NM_010336	ENSMUSG00000038668	Lpar1	AI326300|Edg2|Gpcr26|Kdt2|lpA1|vzg-1	lysophosphatidic acid receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-105700631-4	chr5	105700521	105700721	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178701)	promoter-TSS (NM_178701)	-189.0	NM_178701	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	5.96261558080155	5.4469865495453	6.16208021597672	4.84850440389442	5.13571341850747	6.25143163334668	6.19972274511403	6.39728305351721	0.41584082515911	0.204456111387941	0.69170614885264
Merged-chr12-81971976-4	chr12	81971873	81972073	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018814, intron 20 of 35)	intron (NM_018814, intron 20 of 35)	111943.0	NM_018814	54604.0	Mm.86584	NM_018814	ENSMUSG00000021140	Pcnx	2900024E21Rik|3526401J03Rik|AF096286|AI327143|AI413187|Pcnx1|Pcnxl1	pecanex homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3999391-3	chr19	3999274	3999474	+	804.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011533, exon 8 of 8)	3' UTR (NM_011533, exon 8 of 8)	-1206.0	NM_025529	66387.0	Mm.259222	NM_025529	ENSMUSG00000110949	Nudt8	2310039H17Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-114292711-4	chr7	114292600	114292800	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16584.0	NM_011965	26440.0	Mm.121265	NM_011965	ENSMUSG00000030751	Psma1	C2|HC2|Pros-30|alpha-type	proteasome (prosome, macropain) subunit, alpha type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-154792655-1	chr2	154792555	154792755	+	1000.0	f1_balb.idr	intron (NM_001139513, intron 1 of 8)	intron (NM_001139513, intron 1 of 8)	1545.0	NM_001139511	19383.0	Mm.221440	NM_023130	ENSMUSG00000027593	Raly	AI663842|Merc	hnRNP-associated with lethal yellow	protein-coding	1.2330273985308	0.939232932174415	2.13123368039048	1.44836517629772	1.38284187792263	0.943335827436155	2.06679034569106	1.45625920329964	0.0150630897496897	0.990438571178035	0.998431161219273
Merged-chr12-24595516-3	chr12	24595417	24595617	+	715.650024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145890, intron 6 of 13)	MTC|LTR|ERVL-MaLR	14798.0	NM_145890	195733.0	Mm.263068	NM_145890	ENSMUSG00000020656	Grhl1	LBP-32|MGR|Tcfcp2l2	grainyhead like transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-19521935-2	chr3	19521835	19522035	+	640.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025489, intron 1 of 4)	intron (NM_025489, intron 1 of 4)	-9312.0	NM_001163537	66326.0	Mm.45615	NM_025489	ENSMUSG00000027606	Dnajc5b	1700008A05Rik	DnaJ heat shock protein family (Hsp40) member C5 beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-33122853-4	chr19	33122777	33122977	+	825.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34235.0	NR_039552	100628575.0		NR_039552	ENSMUSG00000106278	Mir3970	mmu-mir-3970|mu-mir-3970	microRNA 3970	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85389265-4	chr12	85389152	85389352	+	972.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14535.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19578855-2	chr7	19578755	19578955	+	936.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_022409, intron 2 of 2)	B1_Mur1|SINE|Alu	1568.0	NM_022409	63872.0	Mm.23310	NM_022409	ENSMUSG00000011267	Zfp296	2210018A16Rik|Znf296	zinc finger protein 296	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-4094563-4	chr11	4094461	4094661	+	921.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026443, intron 1 of 3)	intron (NM_026443, intron 1 of 3)	870.0	NM_026443	67900.0	Mm.41719	NM_026443	ENSMUSG00000004748	Mtfp1	1700020C11Rik|2610507A21Rik|AV005788|Mtp18	mitochondrial fission process 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-9610207-4	chr4	9610114	9610314	+	829.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290367, intron 4 of 22)	intron (NM_001290367, intron 4 of 22)	33503.0	NM_001177853	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-58735286-4	chr6	58735188	58735388	+	944.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-96177.0	NM_001361967	73998.0	Mm.191892	NM_028705	ENSMUSG00000029804	Herc3	5730409F18Rik|AI646603|mKIAA0032	hect domain and RLD 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-156553703-1	chr1	156553603	156553803	+	1000.0	f1_c57bl6.idr	Intergenic	Intergenic	-5084.0	NM_009595	11352.0	Mm.329515	NM_009595	ENSMUSG00000026596	Abl2	AA536808|Abll|Arg	v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)	protein-coding	-0.458596091919229	-0.444341895660838	-0.448992445342042	0.469814927771942	-0.299446408735584	-0.443296131152155	-0.25330337731255	-0.451963376886943	-1.95604680666319	0.43774442980629	1
Merged-chr7-16259274-4	chr7	16259127	16259327	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_007577, exon 2 of 3)	5' UTR (NM_007577, exon 2 of 3)	111.0	NM_001173550	12273.0	Mm.247623	NM_007577	ENSMUSG00000049130	C5ar1	C5aR|C5r1|Cd88|D7Msu1	complement component 5a receptor 1	protein-coding	5.3606612696566	4.84007965014102	5.30534355661276	5.23692538398891	5.01097449393132	5.33054562295212	5.27736617914103	4.84929304783589	-0.0956144253070225	0.753088464243427	0.998431161219273
Merged-chr3-30593916-4	chr3	30593808	30594008	+	980.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	5962.0	NM_029690	76652.0	Mm.116928	NM_029690	ENSMUSG00000037737	Actrt3	1700119I24Rik|ARP-T3|Arpm1	actin related protein T3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-94382241-4	chr13	94382149	94382349	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009680, intron 1 of 26)	intron (NM_009680, intron 1 of 26)	23289.0	NM_009680	11774.0	Mm.21185	NM_009680	ENSMUSG00000021686	Ap3b1	AP-3|AU015684|C78395|Hps2|beta3A|pe|pearl|rim2	adaptor-related protein complex 3, beta 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97394349-3	chr11	97394258	97394458	+	905.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_138657, exon 10 of 10)	3' UTR (NM_138657, exon 10 of 10)	31807.0	NM_138657	192157.0	Mm.34339	NM_138657	ENSMUSG00000038485	Socs7	2310063P06Rik|C85125|Nap4	suppressor of cytokine signaling 7	protein-coding	1.92579487454916	3.13694445851653	1.28302686694491	1.63644468791787	1.94434350452654	1.0471019054698	2.00820998858016	0.989047231105917	-1.50755604860538	0.188012270378061	0.666074179132669
Merged-chr8-120094887-2	chr8	120094787	120094987	+	883.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133967, intron 1 of 7)	intron (NM_133967, intron 1 of 7)	6585.0	NM_133967	102193.0	Mm.240076	NM_133967	ENSMUSG00000031823	Zdhhc7	AL024087|Gramp2	zinc finger, DHHC domain containing 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-80392197-3	chr18	80392135	80392335	+	864.3110960000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27981.0	NM_001190373	240444.0	Mm.279568	NM_001190373	ENSMUSG00000059852	Kcng2	AA591524	potassium voltage-gated channel, subfamily G, member 2	protein-coding	1.07945706520202	0.711497817193743	1.29785516045642	0.867674722436976	1.19293344067239	0.713753434905386	1.4164462507101	1.14909554786841	0.617472487869611	0.667256809614965	0.992612068328693
Merged-chr10-80589547-3	chr10	80589429	80589629	+	850.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145421, intron 1 of 4)	RSINE1|SINE|B4	812.0	NM_145421	216169.0	Mm.29802	NM_145421	ENSMUSG00000003346	Abhd17a	1700013O15Rik|BC005632|D10Bwg1364e|Fam108a	abhydrolase domain containing 17A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-38975037-4	chr6	38974929	38975129	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 3 of 12)	intron (NM_011539, intron 3 of 12)	56043.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-60350584-4	chr10	60350418	60350618	+	926.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028732, intron 1 of 6)	intron (NM_028732, intron 1 of 6)	3667.0	NM_028732	74048.0	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-73814754-3	chr18	73814606	73814806	+	912.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145494, intron 1 of 15)	intron (NM_145494, intron 1 of 15)	686.0	NM_145494	107029.0	Mm.36817	NM_145494	ENSMUSG00000024556	Me2	AW120568|D030040L20Rik|NAD-ME	malic enzyme 2, NAD(+)-dependent, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16885362-7	chr7	16885226	16885426	+	979.404785	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081655, exon 4 of 4)	exon (NM_001081655, exon 4 of 4)	-6460.0	NM_010320	14709.0	Mm.103770	NM_010320	ENSMUSG00000063594	Gng8	G(y)8	guanine nucleotide binding protein (G protein), gamma 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-61198434-2	chr10	61198334	61198534	+	590.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001081127, exon 22 of 22)	3' UTR (NM_001081127, exon 22 of 22)	23172.0	NM_023064	65971.0	Mm.30227	NM_023064	ENSMUSG00000020096	Tbata	1700021K02Rik|AI428928|Spatial|Titest	thymus, brain and testes associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-12781014-2	chr17	12780914	12781114	+	768.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_027784, intron 2 of 2)	L1MD1|LINE|L1	-11308.0	NM_010515	16004.0	Mm.26553	NM_010515	ENSMUSG00000023830	Igf2r	AI661837|CD222|CI-MPR|M6P/IGF2R|Mpr300	insulin-like growth factor 2 receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-51087891-3	chr14	51087787	51087987	+	807.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3190.0	NM_001161731	11727.0	Mm.202665	NM_007447	ENSMUSG00000072115	Ang	AI385586|Ang1|Rnase5|Rnase5a	angiogenin, ribonuclease, RNase A family, 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-41530841-3	chr3	41530750	41530950	+	697.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2376.0	NR_130791	78648.0	Mm.366093	NR_130791		2400006E01Rik	Gm43733|lncRNA-JADE	RIKEN cDNA 2400006E01 gene	ncRNA	0.836383271493123	0.696611747898303	1.24172467627367	1.32803054709381	0.842863777703727	0.699878153551566	2.03388644005566	1.20691372880449	1.0020662793098	0.478652102914469	0.928092227925527
Merged-chr1-61709986-2	chr1	61709886	61710086	+	911.5833130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081050, intron 1 of 22)	intron (NM_001081050, intron 1 of 22)	71162.0	NM_001081050	72823.0	Mm.35153	NM_001081050	ENSMUSG00000052062	Pard3b	1810008K04Rik|2010002N16Rik|2810455B10Rik|Als2cr19|PAR3B|PAR3L|PAR3beta	par-3 family cell polarity regulator beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-46438696-2	chr11	46438596	46438796	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001104556, intron 1 of 1)	intron (NM_001104556, intron 1 of 1)	1735.0	NM_025426	66213.0	Mm.24159	NM_025426	ENSMUSG00000020397	Med7	1110063B05Rik|Crsp33|Crsp9	mediator complex subunit 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-24641931-4	chr10	24641841	24642041	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008813, exon 25 of 25)	exon (NM_008813, exon 25 of 25)	46499.0	NM_010217	14219.0	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-124599182-4	chr2	124599083	124599283	+	924.5166630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290997, intron 5 of 20)	intron (NM_001290997, intron 5 of 20)	-11113.0	NM_199238	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-55747371-4	chr16	55747280	55747480	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	74758.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-164652441-4	chr1	164652339	164652539	+	836.158325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	-144224.0	NM_019759	56429.0	Mm.28935	NM_019759	ENSMUSG00000026574	Dpt	1810032B19Rik|5033416F05Rik|EQ-1|Eq1	dermatopontin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-16842693-3	chr6	16842592	16842792	+	924.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031198, intron 4 of 6)	intron (NM_031198, intron 4 of 6)	55749.0	NM_031198	21426.0	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-78362152-2	chr17	78362052	78362252	+	921.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_015800, intron 13 of 16)	intron (NM_015800, intron 13 of 16)	56000.0	NM_001285949	225020.0	Mm.236835	NM_199448	ENSMUSG00000056121	Fez2	9030616F16|D17Ertd315e	fasciculation and elongation protein zeta 2 (zygin II)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46478950-4	chr19	46478847	46479047	+	971.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025391, intron 10 of 11)	intron (NM_001025391, intron 10 of 11)	-22701.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-18891916-2	chr2	18891816	18892016	+	660.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008845, intron 3 of 9)	intron (NM_008845, intron 3 of 9)	-90098.0	NR_131254	66774.0	Mm.87075	NR_131254	ENSMUSG00000097638	Carlr	4933439G12Rik|Carl	cardiac and apoptosis-related long non-coding RNA	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75571409-4	chr11	75571324	75571524	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199284, intron 12 of 13)	intron (NM_001199284, intron 12 of 13)	-16655.0	NM_008850	18738.0	Mm.3128	NM_008850	ENSMUSG00000017781	Pitpna	Pitpn|vb|vibrator	phosphatidylinositol transfer protein, alpha	protein-coding	4.9761913837642	3.82054784981941	4.85358941630624	4.68793769762279	4.83009987706619	5.70744823256548	4.71188563868627	4.71009578322535	0.474025078581099	0.224903500726212	0.716808259790979
Merged-chr14-76702273-4	chr14	76702194	76702394	+	763.43335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24726.0	NR_015485	73272.0	Mm.116804	NR_015485	ENSMUSG00000101009	1700108F19Rik	1700020I02Rik|BB065030	RIKEN cDNA 1700108F19 gene	ncRNA	1.36917255227876	1.58157110991799	2.60066372189578	3.38227771992822	0.891761458714434	1.01697749946803	0.978958331150563	2.61531135949168	-1.83786834842822	0.330966145617197	0.83197671091297
Merged-chr10-19170807-4	chr10	19170702	19170902	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038022, intron 1 of 1)	intron (NR_038022, intron 1 of 1)	3564.0	NR_038022	100504265.0	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-52275945-2	chr14	52275845	52276045	+	752.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172601, intron 2 of 7)	B3A|SINE|B2	-3201.0	NM_023434	268741.0	Mm.246237	NM_023434	ENSMUSG00000016831	Tox4	5730589K01Rik|A630040M18|AA410149|LCP1	TOX high mobility group box family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-62980250-4	chr10	62980161	62980361	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027425)	promoter-TSS (NM_027425)	38.0	NM_027425	70432.0	Mm.234587	NM_027425	ENSMUSG00000020070	Rufy2	2610111M19Rik|AI844453|Denn|LZ-FYVE|ZFYVE13	RUN and FYVE domain-containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-104048211-3	chr5	104048177	104048377	+	840.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_049192)	TTS (NR_049192)	274.0	NR_049192	100885831.0		NR_049192	ENSMUSG00000093690	Mir5619	Gm23866|mir-5619|mmu-mir-5619	microRNA 5619	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-20916607-4	chr10	20916507	20916707	+	836.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35940.0	NM_026203	52906.0	Mm.253280	NM_026203	ENSMUSG00000019986	Ahi1	1700015F03Rik|Ahi-1|D10Bwg0629e	Abelson helper integration site 1	protein-coding	2.41076660424265	2.81765435258338	2.3188314600718	1.1715273119333	2.79287491779532	2.74935606729131	1.20968455450317	1.17684126680632	-0.167878504277312	0.881285301091161	0.998431161219273
Merged-chr17-56005888-4	chr17	56005790	56005990	+	778.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_102313)	promoter-TSS (NR_102313)	-284.0	NR_102313	106766.0	Mm.204991	NM_145934	ENSMUSG00000038781	Stap2	AW049765|STAP-2	signal transducing adaptor family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-153250797-4	chr3	153250693	153250893	+	997.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011372, intron 3 of 4)	intron (NM_011372, intron 3 of 4)	47856.0	NR_126464	75489.0	Mm.443252	NR_126464	ENSMUSG00000105023	1700012D16Rik	-	RIKEN cDNA 1700012D16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3802340-2	chr4	3802240	3802440	+	852.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	33315.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171851719-4	chr1	171851624	171851824	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289470, intron 2 of 8)	intron (NM_001289470, intron 2 of 8)	12027.0	NM_013489	12523.0	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	3.08932660422759	2.96237382668324	3.04470319799592	2.78514463625567	1.90911840035945	2.63247344920359	2.88648461094508	2.33246971136783	-0.965491829154724	0.179683262496058	0.651048857487728
Merged-chr14-30652180-2	chr14	30652080	30652280	+	628.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2195.0	NM_177815	328370.0	Mm.259657	NM_177815	ENSMUSG00000052395	Rft1	D930025H04	RFT1 homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21128953-2	chr9	21128853	21129053	+	723.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205312, intron 1 of 24)	RSINE1|SINE|B4	2322.0	NM_018793	54721.0	Mm.20249	NM_018793	ENSMUSG00000032175	Tyk2	JTK1	tyrosine kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70646580-2	chr8	70646480	70646680	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_023217, exon 5 of 5)	3' UTR (NM_023217, exon 5 of 5)	13158.0	NM_023217	66522.0	Mm.154906	NM_023217	ENSMUSG00000056204	Pgpep1	2810003H13Rik|Gm19458|PAP-I|PGP|PGP-I|PGPI|Pcp	pyroglutamyl-peptidase I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-13676589-4	chr8	13676472	13676672	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 1 of 23)	intron (NM_009025, intron 1 of 23)	1015.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-34041155-4	chr12	34041064	34041264	+	988.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	83493.0	NM_011658	22160.0	Mm.3280	NM_011658	ENSMUSG00000035799	Twist1	M-Twist|Pde|Ska10|Ska<m10Jus>|Twist|bHLHa38|pdt	twist basic helix-loop-helix transcription factor 1	protein-coding	2.58147257614838	2.37537843918786	2.15574413445636	1.31296233709195	2.989303916997	1.89442051377576	1.83258264900329	2.9556888827654	0.756569174215014	0.416875952585772	0.897222495742637
Merged-chr8-11442106-2	chr8	11442006	11442206	+	717.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009932, intron 41 of 47)	intron (NM_009932, intron 41 of 47)	-35823.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123713974-4	chr5	123713872	123714072	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027494, intron 5 of 13)	intron (NM_027494, intron 5 of 13)	7072.0	NM_027494	70650.0	Mm.279427	NM_027494	ENSMUSG00000029427	Zcchc8	5730565F05Rik	zinc finger, CCHC domain containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-128633372-4	chr7	128633270	128633470	+	967.31665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178641, intron 1 of 19)	intron (NM_178641, intron 1 of 19)	22005.0	NM_178641	101490.0	Mm.490344	NM_178641	ENSMUSG00000042105	Inpp5f	5830435P03Rik|AI115354|AW561896|SAC2|cI-27|hSAC2|mKIAA0966	inositol polyphosphate-5-phosphatase F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-102659039-1	chr2	102658939	102659139	+	655.0	f0_balb.idr	5' UTR (NM_001361018, exon 1 of 10)	5' UTR (NM_001361018, exon 1 of 10)	350.0	NM_001361018	20511.0	Mm.267547	NM_011393	ENSMUSG00000005089	Slc1a2	1700091C19Rik|2900019G14Rik|AI159670|Eaat2|GLT-1|GLT1|MGLT1	solute carrier family 1 (glial high affinity glutamate transporter), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-115351120-3	chr10	115351012	115351212	+	880.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359472, intron 3 of 6)	ORR1B2|LTR|ERVL-MaLR	11137.0	NM_001359470	67226.0	Mm.29647	NM_133683	ENSMUSG00000069520	Tmem19	2810428F02Rik|AW125171	transmembrane protein 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-80715504-4	chr18	80715398	80715598	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2427.0	NM_001164110	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-93511033-4	chr4	93510927	93511127	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-175516.0	NM_026954	69136.0	Mm.171558	NM_026954	ENSMUSG00000054000	Tusc1	2200001D17Rik|TSG-9	tumor suppressor candidate 1	protein-coding	0.494609951530516	0.836726557011377	0.423212307099575	0.407092905506189	0.384191060280035	0.448702487940613	0.427809314307849	0.409913612959165	-1.01989026443992	0.530332588356725	1
Merged-chr8-95037499-2	chr8	95037399	95037599	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173036, intron 8 of 11)	L1MC4a|LINE|L1	-17604.0	NM_001042715	330830.0	Mm.277112	NM_001042715	ENSMUSG00000031786	Drc7	Ccdc135|Gm770|SRG-L|SRG-S	dynein regulatory complex subunit 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-48695589-4	chr2	48695488	48695688	+	993.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-118521.0	NM_007396	11480.0	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-93915100-2	chr16	93915000	93915200	+	830.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	14467.0	NM_001165925	56173.0	Mm.328716	NM_019500	ENSMUSG00000047109	Cldn14	AI851731	claudin 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-145352164-1	chr6	145352064	145352264	+	728.0	f1_c57bl6.idr	Intergenic	Intergenic	-35461.0	NR_003625	381827.0	Mm.179075	NM_001001987		1700073E17Rik	-	ribosomal protein L7 pseudogene	pseudo	-0.762803289301568	-1.10544259309554	-1.11614960012009	-1.12425028724527	-1.12678658544461	-1.10312234000797	-1.11372576842064	-0.823703745348463	-0.24845674615299	0.940606257856883	1
Merged-chr3-14381780-3	chr3	14381682	14381882	+	969.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18665.0	NR_033591	622229.0	Mm.486084	NR_033591		Gm6300	EG622229	solute carrier family 7 (cationic amino acid transporter, y+ system), member pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-74252898-3	chr5	74252776	74252976	+	702.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114660, intron 5 of 8)	intron (NM_001114660, intron 5 of 8)	57550.0	NM_026878	68939.0	Mm.293316	NM_026878	ENSMUSG00000049907	Rasl11b	1190017B18Rik	RAS-like, family 11, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-86217775-1	chr15	86217675	86217875	+	551.0	f1_balb.idr	intron (NM_145476, intron 1 of 12)	intron (NM_145476, intron 1 of 12)	3316.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-8168416-2	chr15	8168316	8168516	+	986.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162906)	promoter-TSS (NM_001162906)	-690.0	NM_001162906	73692.0	Mm.164436	NM_001162906	ENSMUSG00000039801	2410089E03Rik	4732468D17Rik|Hug|Jbts17|b2b012Clo	RIKEN cDNA 2410089E03 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-10390065-2	chr17	10389965	10390165	+	644.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	65463.0	NR_045461	76634.0	Mm.491052	NR_045461	ENSMUSG00000099384	1700110C19Rik	-	RIKEN cDNA 1700110C19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-14871614-3	chr3	14871520	14871720	+	934.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007606, exon 7 of 7)	exon (NM_007606, exon 7 of 7)	8082.0	NM_007606	12350.0	Mm.300	NM_007606	ENSMUSG00000027559	Car3	BB219044|Ca3|Car-3	carbonic anhydrase 3	protein-coding	-2.18308165884198	-2.15547475440471	-2.16382331017202	-2.1706810624505	-2.18114370519566	-2.15366558754311	-2.03057248461154	-2.16945352807143	0.759018020146679	0.829933115115583	1
Merged-chr11-69052982-4	chr11	69052965	69053165	+	785.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A3-int|LTR|ERVL-MaLR	-6710.0	NM_028005	71923.0	Mm.340257	NM_028005	ENSMUSG00000045176	Borcs6	2310047M10Rik	BLOC-1 related complex subunit 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-121397943-4	chr5	121397892	121398092	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172722)	promoter-TSS (NM_172722)	10.0	NM_172722	231713.0	Mm.33919	NM_172722	ENSMUSG00000042719	Naa25	4833422K13Rik|A630046C11|AI450868|C330023M02Rik|Mdm20	N(alpha)-acetyltransferase 25, NatB auxiliary subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-25844568-4	chr17	25844474	25844674	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001163766)	TTS (NM_001163766)	277.0	NM_145999	214952.0	Mm.40907	NM_145999	ENSMUSG00000025733	Rhot2	Arht2|Miro2	ras homolog family member T2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-105151013-4	chr5	105150917	105151117	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11431.0	NM_001359080	17472.0	Mm.440525	NM_008620	ENSMUSG00000079363	Gbp4	AW228052|Mag-2|Mpa-2|Mpa2	guanylate binding protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56079291-5	chr17	56079247	56079447	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001304785)	promoter-TSS (NM_001304785)	-14.0	NM_024432	66530.0	Mm.28000	NM_024432	ENSMUSG00000019578	Ubxn6	1200008L11Rik|2210415J11Rik|AU040909|Ubxd1|Ubxdc2	UBX domain protein 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-43641834-2	chr7	43641734	43641934	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_028236, exon 4 of 6)	exon (NM_028236, exon 4 of 6)	7095.0	NM_028236	72431.0	Mm.158821	NM_028236	ENSMUSG00000030472	Ceacam18	2010110O04Rik	carcinoembryonic antigen-related cell adhesion molecule 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-17199827-2	chr16	17199727	17199927	+	982.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009456, intron 1 of 3)	intron (NM_009456, intron 1 of 3)	1665.0	NM_009456	22195.0	Mm.3074	NM_009456	ENSMUSG00000038965	Ube2l3	C79827|UbcM4|Ubce7	ubiquitin-conjugating enzyme E2L 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-138126483-1	chr1	138126383	138126583	+	591.0	f0_balb.idr	intron (NM_001268286, intron 2 of 28)	intron (NM_001268286, intron 2 of 28)	48643.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-132018363-4	chr2	132018252	132018452	+	954.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175445, intron 1 of 10)	intron (NM_175445, intron 1 of 10)	11636.0	NM_175445	215653.0	Mm.204737	NM_175445	ENSMUSG00000027339	Rassf2	3830431H01Rik|9030412M04Rik|AI852669|AW495050	Ras association (RalGDS/AF-6) domain family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-39594936-4	chr8	39594845	39595045	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113326, intron 8 of 9)	intron (NM_001113326, intron 8 of 9)	47733.0	NM_031195	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	4.24657785988562	4.28555929465868	4.48035067674553	4.62634231257263	4.23410312614833	4.65336107875205	4.46247196466375	3.41920343511715	-0.205883876021212	0.626122609506784	0.980912176761026
Merged-chr10-122794690-7	chr10	122794560	122794760	+	999.9523929999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110218, intron 2 of 9)	intron (NM_001110218, intron 2 of 9)	115345.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-66001026-1	chr5	66000926	66001126	+	612.0	f1_balb.idr	intron (NR_027961, intron 2 of 6)	intron (NR_027961, intron 2 of 6)	3259.0	NR_027961	231253.0	Mm.436542	NM_177679	ENSMUSG00000054598	9130230L23Rik	-	RIKEN cDNA 9130230L23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-44419270-4	chr13	44419168	44419368	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20459.0	NR_045489	69491.0	Mm.392410	NR_045489	ENSMUSG00000098144	1700029N11Rik	-	RIKEN cDNA 1700029N11 gene	ncRNA	2.7160932294088	4.12950548944812	3.21107680935718	2.87976886000589	3.61145836172192	4.03308712950056	3.53089563058493	4.46164926488412	0.902119971327778	0.11309180067321	0.52650449242973
Merged-chr7-126702530-4	chr7	126702433	126702633	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301374, intron 2 of 10)	intron (NM_001301374, intron 2 of 10)	1687.0	NM_001301374	12721.0	Mm.290482	NM_009898	ENSMUSG00000030707	Coro1a	Clabp|Lmb3|TACO|p57	coronin, actin binding protein 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191085748-4	chr1	191085650	191085850	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12664.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	5.62073755495212	5.07290567729003	5.4480539920063	6.06346083501954	4.92635952364102	6.21665503926415	5.7270767722658	5.21646134939009	-0.0032842111848927	0.992068023738	0.998431161219273
Merged-chr1-172409203-2	chr1	172409103	172409303	+	712.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32672.0	NM_026234	67556.0	Mm.26612	NM_026234	ENSMUSG00000050229	Pigm	4933437L05Rik|AI644422|AV302080|C920011G20Rik	phosphatidylinositol glycan anchor biosynthesis, class M	protein-coding	1.01702849755725	0.52863482565601	0.519022601117594	1.28733647890626	1.02827284783481	0.530789126778811	0.521150568236739	1.29653022070477	0.0334742686616352	0.984535874823786	1
Merged-chr6-115925293-2	chr6	115925193	115925393	+	626.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001167763, intron 26 of 28)	intron (NM_001167763, intron 26 of 28)	-6634.0	NM_145383	212541.0	Mm.2965	NM_145383	ENSMUSG00000030324	Rho	Noerg1|Opn2|Ops|RP4	rhodopsin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-64347553-2	chr9	64347453	64347653	+	573.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6296.0	NM_001001295	213550.0	Mm.268341	NM_172519	ENSMUSG00000032396	Dis3l	AV340375	DIS3 like exosome 3'-5' exoribonuclease	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-3138511-5	chr11	3138353	3138553	+	917.714294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030207, intron 22 of 32)	MT2B|LTR|ERVL	14432.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-14823562-5	chr1	14823541	14823741	+	968.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-67675.0	NM_010827	17681.0	Mm.5820	NM_010827	ENSMUSG00000025930	Msc	MyoR|bHLHa22	musculin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-43311761-2	chr7	43311626	43311826	+	601.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357812, intron 1 of 4)	intron (NM_001357812, intron 1 of 4)	1574.0	NM_001357812	69930.0	Mm.45367	NM_027264	ENSMUSG00000012640	Zfp715	2610041B18Rik|mszf15	zinc finger protein 715	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-66914533-2	chr9	66914433	66914633	+	600.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	5172.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-52425712-3	chr2	52425586	52425786	+	702.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_182994)	promoter-TSS (NM_182994)	-812.0	NM_182994	75423.0	Mm.314378	NM_182994	ENSMUSG00000036093	Arl5a	2410015N24Rik|2810410P22Rik|AA408731|AW610751|Arl5|T25534	ADP-ribosylation factor-like 5A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-4947963-2	chr11	4947863	4948063	+	543.5	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010904, exon 1 of 4)	intron (NM_001243043, intron 1 of 22)	101.0	NM_010904	380684.0	Mm.298283	NM_010904	ENSMUSG00000020396	Nefh	NF-H|NF200|Nfh|mKIAA0845	neurofilament, heavy polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-84555025-4	chr11	84554924	84555124	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	29364.0	NR_038057	78365.0	Mm.260345	NR_038057	ENSMUSG00000087211	Lhx1os	1500016L03Rik|Lhx1as	LIM homeobox 1, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3809114-2	chr4	3809039	3809239	+	720.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19C|LTR|ERVK	26516.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	-2.18138529563533	-2.15523716995652	-2.1631445789866	-2.16963996020037	-2.05513010215571	-2.15352360143315	-2.16135451490766	-2.16847729006863	0.759018020146679	0.829933115115583	1
Merged-chr14-57890400-4	chr14	57890287	57890487	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360097)	promoter-TSS (NM_001360097)	-51.0	NM_001360097	75965.0	Mm.29044	NM_029492	ENSMUSG00000021969	Zdhhc20	4930542A17Rik|5033406L14Rik|AI448102|B230110O18Rik|HK11	zinc finger, DHHC domain containing 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-97787859-10	chr15	97787801	97788001	+	985.525024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026353, intron 1 of 2)	intron (NM_026353, intron 1 of 2)	3536.0	NM_026353	67739.0	Mm.28955	NM_026353	ENSMUSG00000081534	Slc48a1	4930570C03Rik	solute carrier family 48 (heme transporter), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131972710-4	chr1	131972594	131972794	+	971.658325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145977, intron 1 of 4)	intron (NM_145977, intron 1 of 4)	2085.0	NM_145977	212980.0	Mm.200307	NM_145977	ENSMUSG00000026435	Slc45a3	2210413P12Rik|AU023994|AU043764|IPCA-6|PRST|Pcanap6	solute carrier family 45, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-62230766-2	chr14	62230666	62230866	+	589.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	62213.0	NM_173419	239133.0	Mm.127330	NM_173419	ENSMUSG00000048281	Dleu7	BC038059	deleted in lymphocytic leukemia, 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-114130822-4	chr5	114130727	114130927	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011677)	promoter-TSS (NM_011677)	-329.0	NM_011677	22256.0	Mm.1393	NM_011677	ENSMUSG00000029591	Ung	UNG1|UNG2	uracil DNA glycosylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6942505-4	chr19	6942405	6942605	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285453)	promoter-TSS (NM_001285453)	-55.0	NM_001177361	107173.0	Mm.276555	NM_207220	ENSMUSG00000024958	Gpr137	AI428855	G protein-coupled receptor 137	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-116244470-2	chr7	116244370	116244570	+	569.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001305185, intron 3 of 26)	B2_Mm2|SINE|B2	-6694.0	NM_001305186	233765.0	Mm.3741	NM_172743	ENSMUSG00000045659	Plekha7	A430081P20Rik|AI414265	pleckstrin homology domain containing, family A member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-10113110-2	chr17	10113010	10113210	+	587.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	206251.0	NM_021881	19317.0	Mm.130694	NM_021881	ENSMUSG00000062078	Qk	1110003F05Rik|1500005P18|QkI|l(17)-1Wis|l17Wis1	quaking	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139750700-4	chr5	139750613	139750813	+	717.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_026748)	TTS (NM_026748)	-14380.0	NM_174850	231830.0	Mm.240510	NM_174850	ENSMUSG00000036718	Micall2	A930021H16Rik|JRAB|MICAL-L2|mFLJ00139	MICAL-like 2	protein-coding	2.7721062905059	3.3432999580393	2.92962777673164	1.60798000755096	2.7170627202806	1.43112876231055	1.66931780246944	3.08953442228121	-0.718248730674636	0.435984326737999	0.907834077091723
Merged-chr10-75313199-2	chr10	75313099	75313299	+	681.75	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001145826)	TTS (NM_001145826)	-3678.0	NM_009630	11540.0	Mm.333734	NM_009630	ENSMUSG00000020178	Adora2a	A2AAR|A2aR|AA2AR	adenosine A2a receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-58697427-2	chr3	58697327	58697527	+	572.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045167, intron 2 of 7)	intron (NR_045167, intron 2 of 7)	4838.0	NR_045167	71301.0	Mm.254475	NR_045167	ENSMUSG00000097725	4930593A02Rik	4933440I01Rik	RIKEN cDNA 4930593A02 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-109752273-4	chr7	109752201	109752401	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020050)	promoter-TSS (NM_020050)	-38.0	NM_020050	56786.0	Mm.240668	NM_020050	ENSMUSG00000031021	Tmem9b	2310004K06Rik|AW539847|D7H11orf15|ICRFP703B1614Q5.3	TMEM9 domain family, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-8708841-4	chr11	8708745	8708945	+	966.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44310.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-60800053-2	chr14	60799953	60800153	+	636.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027436, intron 5 of 18)	B1F2|SINE|Alu	15487.0	NR_040642	70478.0	Mm.274650	NM_027436	ENSMUSG00000021993	Mipep	5730405E07Rik|MIP	mitochondrial intermediate peptidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-63991660-2	chr7	63991567	63991767	+	565.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52752.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	-1.33968511576914	-1.30956341409706	-1.31970802375329	-1.32804110817214	-0.94743229445443	-1.14774401221339	-1.31741150649064	-1.32654949004532	2.34703116667703	0.48488442496103	1
Merged-chr16-36071048-2	chr16	36070948	36071148	+	929.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159421)	promoter-TSS (NM_001159421)	467.0	NM_027342	70186.0	Mm.212991	NM_027342	ENSMUSG00000003955	Fam162a	2310056P07Rik|HGTD-P	family with sequence similarity 162, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-10501896-2	chr16	10501796	10501996	+	973.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001243761, exon 2 of 19)	exon (NM_001243761, exon 2 of 19)	12115.0	NM_001243761	12265.0	Mm.249560	NM_007575	ENSMUSG00000022504	Ciita	C2ta|EG669998|Gm9475|Mhc2ta	class II transactivator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-3714910-4	chr16	3714824	3715024	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019453, intron 2 of 9)	intron (NM_019453, intron 2 of 9)	3200.0	NM_001161790	54483.0	Mm.143718	NM_019453	ENSMUSG00000022534	Mefv	FMF|TRIM20|pyrin	Mediterranean fever	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-76498323-2	chr11	76498223	76498423	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198018, intron 1 of 21)	intron (NM_198018, intron 1 of 21)	-3828.0	NM_001346670	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-36538816-4	chr5	36538722	36538922	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133910, intron 3 of 13)	L1MEf|LINE|L1	-8199.0	NM_001113364	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-23840926-2	chr18	23840826	23841026	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162941, intron 3 of 7)	intron (NM_001162941, intron 3 of 7)	36956.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84069443-3	chr8	84069368	84069568	+	782.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009055, intron 1 of 20)	intron (NM_009055, intron 1 of 20)	2632.0	NM_009055	19724.0	Mm.7892	NM_009055	ENSMUSG00000031706	Rfx1	AI047719|AI385641	regulatory factor X, 1 (influences HLA class II expression)	protein-coding	1.15160877277451	1.75222184840311	1.91374700694261	1.85570552018093	1.15860155136803	1.0289227635766	1.82320909001394	1.64961983845251	-0.786292389303426	0.505162609109706	0.940939014262092
Merged-chr10-34307264-4	chr10	34307175	34307375	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176968, intron 11 of 11)	intron (NM_176968, intron 11 of 11)	9854.0	NM_030203	72480.0	Mm.21485	NM_030203	ENSMUSG00000039485	Tspyl4	2610102M01Rik|B230210I21Rik|D10Bwg0791e	TSPY-like 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-14439289-3	chr16	14439201	14439401	+	766.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008576, intron 14 of 30)	intron (NM_008576, intron 14 of 30)	77743.0	NM_008576	17250.0	Mm.196634	NM_008576	ENSMUSG00000023088	Abcc1	Abcc1a|Abcc1b|MRP|Mdrap|Mrp1	ATP-binding cassette, sub-family C (CFTR/MRP), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-35442283-4	chr2	35442179	35442379	+	969.087524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010283, intron 1 of 8)	intron (NM_010283, intron 1 of 8)	19170.0	NM_001308299	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25766096-5	chr7	25765898	25766098	+	709.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009465, intron 14 of 19)	LTR33A|LTR|ERVL	-11239.0	NM_178089	232989.0	Mm.254223	NM_144922	ENSMUSG00000040725	Hnrnpul1	E130317O14Rik|E1B-AP5|E1BAP5|Hnrnpul|Hnrpul1	heterogeneous nuclear ribonucleoprotein U-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-47699278-2	chr9	47699178	47699378	+	729.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	118930.0	NR_046048	100038460.0	Mm.447649	NR_046048		Gm10677	-	predicted gene 10677	ncRNA	1.37154981065202	1.92412080626624	1.62543980978778	0.918570179071786	1.24636780131052	1.94018891078835	1.63933493910199	0.921006625441285	-0.0514848279813235	0.967502119102471	0.998431161219273
Merged-chr7-34968799-1	chr7	34968699	34968899	+	747.0	f1_balb.idr	intron (NM_008820, intron 7 of 14)	ORR1B2|LTR|ERVL-MaLR	56392.0	NM_008820	18624.0	Mm.69751	NM_008820	ENSMUSG00000063931	Pepd	Pep-4|Pep4|dal	peptidase D	protein-coding	-1.58994551673671	-1.55912852307891	-1.56844783632235	-1.57610299769523	-1.18549093183599	-1.55710898902261	-1.56633814807757	-1.57473272746952	1.78703309985663	0.610309988231842	1
Merged-chr8-128558187-3	chr8	128558084	128558284	+	970.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-127470.0	NM_010578	16412.0	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	2.6630549723244	2.92501591055907	4.02073441108018	3.56949842194114	5.64129158772123	5.38098395396452	5.91767043916055	5.3147325441447	2.73714023584246	2.58831088096712e-11	6.29484201686018e-09
Merged-chr11-85841504-2	chr11	85841404	85841604	+	803.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009324, exon 7 of 7)	3' UTR (NM_009324, exon 7 of 7)	8889.0	NM_009324	21385.0	Mm.287052	NM_009324	ENSMUSG00000000093	Tbx2	-	T-box 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-77371359-4	chr11	77371252	77371452	+	909.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291190, intron 1 of 13)	intron (NM_001291190, intron 1 of 13)	23072.0	NM_001291190	237860.0	Mm.440381	NM_177710	ENSMUSG00000037926	Ssh2	SSH-2|SSH-2L|mSSH-2L	slingshot protein phosphatase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-35696062-2	chr5	35695962	35696162	+	910.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16282.0	NM_030127	78558.0	Mm.274255	NM_030127	ENSMUSG00000029096	Htra3	2210021K23Rik|9530081K03Rik|Prsp|Tasp	HtrA serine peptidase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-134374127-4	chr5	134374014	134374214	+	767.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081462, intron 22 of 29)	intron (NM_001081462, intron 22 of 29)	47660.0	NR_039544	100628570.0		NR_039544	ENSMUSG00000093311	Mir3965	mmu-mir-3965|mu-mir-3965	microRNA 3965	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-53799210-2	chr11	53799110	53799310	+	660.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_033332, intron 3 of 3)	MTE2b|LTR|ERVL-MaLR	28737.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-9072212-6	chr15	9072031	9072231	+	963.805542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040395, intron 1 of 12)	intron (NM_001040395, intron 1 of 12)	871.0	NM_001040395	68646.0	Mm.244226	NM_001040395	ENSMUSG00000022253	Nadk2	MNADK|Nadkd1	NAD kinase 2, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-92385086-2	chr5	92384986	92385186	+	757.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310664, intron 2 of 10)	ORR1D1|LTR|ERVL-MaLR	-3048.0	NM_181728	109979.0	Mm.263514	NM_181728	ENSMUSG00000034842	Art3	4930569O04Rik|ARTC3	ADP-ribosyltransferase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-24512106-4	chr9	24512042	24512242	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9002.0	NM_172920	244745.0	Mm.38526	NM_172920	ENSMUSG00000043067	Dpy19l1	1100001I19Rik|6030402K12|AI225861|AW558481	dpy-19-like 1 (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132178800-4	chr4	132178704	132178904	+	964.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33452.0	NM_145393	213541.0	Mm.23998	NM_145393	ENSMUSG00000040025	Ythdf2	9430020E02Rik|HGRG8|NY-REN-2	YTH domain family 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-24683926-2	chr11	24683826	24684026	+	773.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46796.0	NR_033491	100038617.0	Mm.387376	NR_033491	ENSMUSG00000073103	Gm10466	-	predicted gene 10466	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-62705924-2	chr4	62705824	62706024	+	769.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31950.0	NM_001310706	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-32366356-3	chr4	32366249	32366449	+	740.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-51086.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-55878132-2	chr17	55878032	55878232	+	659.3000490000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_144546, intron 1 of 3)	intron (NM_144546, intron 1 of 3)	821.0	NM_144546	104349.0	Mm.460659	NM_144546	ENSMUSG00000057835	Zfp119a	AL024077|Mzf13|Zfp119	zinc finger protein 119a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-19589220-2	chr6	19589120	19589320	+	901.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	33878.0	NR_105789	102465192.0		NR_105789	ENSMUSG00000099149	Mir6370	Gm27480|mmu-mir-6370	microRNA 6370	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45726670-2	chr7	45726570	45726770	+	557.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027055)	promoter-TSS (NM_027055)	-854.0	NM_027055	69363.0	Mm.45607	NM_027055	ENSMUSG00000070563	Spaca4	1700008E09Rik|AV043694|Samp14	sperm acrosome associated 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-140888934-4	chr6	140888818	140889018	+	987.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	262033.0	NM_001309436	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-35219719-4	chr4	35219610	35219810	+	919.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081343, intron 1 of 10)	intron (NM_001081343, intron 1 of 10)	6170.0	NM_001081343	73205.0	Mm.331544	NM_001081343	ENSMUSG00000028300	3110043O21Rik	AI840585|C9orf72	RIKEN cDNA 3110043O21 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-3723490-4	chr16	3723385	3723585	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5361.0	NM_001161791	54483.0	Mm.143718	NM_019453	ENSMUSG00000022534	Mefv	FMF|TRIM20|pyrin	Mediterranean fever	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-20646702-2	chr9	20646602	20646802	+	658.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_153857)	TTS (NR_153857)	1899.0	NR_153859	66177.0	Mm.390165	NM_025401	ENSMUSG00000084786	Ubl5	1110030M22Rik|beacon	ubiquitin-like 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81854815-2	chr15	81854730	81854930	+	653.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_020507, intron 1 of 1)	B3A|SINE|B2	3496.0	NM_020507	57259.0	Mm.323595	NM_020507	ENSMUSG00000048546	Tob2	2900090N22Rik|4930545K18Rik|AV071822|mKIAA1663	transducer of ERBB2, 2	protein-coding	-0.444625619854891	-0.692463809513052	-0.14289512517372	-0.697972119679026	-0.560176605561735	-0.691760258584148	-0.694891968605246	-0.697554345884745	-2.24069052871221	0.41123471797803	1
Merged-chr13-56174718-2	chr13	56174618	56174818	+	635.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001168615, exon 3 of 3)	3' UTR (NM_001168615, exon 3 of 3)	4167.0	NM_145976	212937.0	Mm.116697	NM_145976	ENSMUSG00000049625	Tifab	-	TRAF-interacting protein with forkhead-associated domain, family member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-97816804-3	chr15	97816702	97816902	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001204280, intron 1 of 21)	intron (NM_001204280, intron 1 of 21)	-1939.0	NM_001204281	56233.0	Mm.384027	NM_019572	ENSMUSG00000022475	Hdac7	5830434K02Rik|HD7|HD7a|Hdac7a|mFLJ00062	histone deacetylase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-82122699-4	chr12	82122594	82122794	+	978.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47322.0	NM_001167983	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-6405506-2	chr11	6405406	6405606	+	632.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028601, exon 19 of 19)	3' UTR (NM_028601, exon 19 of 19)	3876.0	NR_106109	102465759.0		NR_106109	ENSMUSG00000098516	Mir7651	Gm27664|mmu-mir-7651	microRNA 7651	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69410457-4	chr11	69410359	69410559	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001017426, intron 1 of 22)	CpG	3216.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-91696473-2	chr13	91696373	91696573	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360776, intron 15 of 15)	intron (NM_001360776, intron 15 of 15)	-45048.0	NM_028790	74156.0	Mm.275963	NM_028790	ENSMUSG00000021620	Acot12	1300004O04Rik|4930449F15Rik|AV027244|Cach|mCACH-1	acyl-CoA thioesterase 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-30464744-2	chr14	30464644	30464844	+	751.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028981, intron 1 of 46)	B4|SINE|B4	6708.0	NR_131095	77710.0	Mm.410773	NR_131095		4831407H17Rik	-	RIKEN cDNA 4831407H17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-29400297-2	chr17	29400196	29400396	+	983.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	39382.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	1.5102337492698	2.06696084889731	0.772874813818235	1.72222874693498	0.733033400547786	2.08555811198632	0.777411443444037	0.759569739275128	-1.01553795571498	0.490307729719108	0.934345795476137
Merged-chr4-108870176-3	chr4	108870088	108870288	+	665.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8882.0	NM_023537	69908.0	Mm.41580	NM_023537	ENSMUSG00000003411	Rab3b	2610528C18Rik	RAB3B, member RAS oncogene family	protein-coding	3.24914843086588	3.26694339432082	3.72866211175091	3.49422745852599	3.75801369829862	3.48867501568624	3.07235665223464	2.97659753739911	-0.126063174032991	0.821808546075301	0.998431161219273
Merged-chr8-70763450-6	chr8	70763314	70763514	+	904.194458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023065, intron 6 of 7)	intron (NM_023065, intron 6 of 7)	-2493.0	NM_183170	234384.0	Mm.213010	NM_183170	ENSMUSG00000035559	Mpv17l2	Fksg24	MPV17 mitochondrial membrane protein-like 2	protein-coding	2.82011077845472	3.43768898254168	2.46407531561607	2.27072697782373	2.50892302016729	2.69264530651858	1.85985004454731	2.5261525399575	-0.8710700609472	0.269119634128926	0.772709964170116
Merged-chr4-154945900-2	chr4	154945800	154946000	+	889.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15023.0	NM_010419	15208.0	Mm.137268	NM_010419	ENSMUSG00000048001	Hes5	bHLHb38	hes family bHLH transcription factor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5808598-2	chr19	5808502	5808702	+	560.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5930.0	NR_002847	72289.0	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-123648217-2	chr14	123648117	123648317	+	942.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	-11923.0	NM_145467	223272.0	Mm.383176	NM_145467	ENSMUSG00000032925	Itgbl1	B930011D01Rik	integrin, beta-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-97697499-2	chr1	97697399	97697599	+	762.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35481.0	NM_133825	52392.0	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71136042-2	chr17	71135942	71136142	+	996.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47490.0	NM_001357791	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-49861924-2	chr16	49861824	49862024	+	566.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010581, intron 1 of 9)	intron (NM_010581, intron 1 of 9)	6270.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-31797091-1	chr17	31796991	31797191	+	596.0	f1_balb.idr	Intergenic	Intergenic	58713.0	NM_010831	17691.0	Mm.290941	NM_010831	ENSMUSG00000024042	Sik1	Hrt-20|Msk|Sik|Sik-1|Snf1lk	salt inducible kinase 1	protein-coding	-1.84371485578039	-1.81332821174849	-1.82251738371298	-1.83006564316449	-1.84158176955426	-1.81133687985023	-1.5312619047181	-1.82871450833159	1.60090129203521	0.64914985597185	1
Merged-chr2-163716597-4	chr2	163716508	163716708	+	895.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039390, intron 3 of 4)	intron (NM_001039390, intron 3 of 4)	22571.0	NM_011106	18769.0	Mm.10091	NM_011106	ENSMUSG00000035268	Pkig	PKIgamma	protein kinase inhibitor, gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-130221243-2	chr5	130221143	130221343	+	952.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081394, intron 1 of 6)	RMER15|LTR|ERVL	-1092.0	NM_027854	71667.0	Mm.258508	NM_027854	ENSMUSG00000053094	Tmem248	0610007L01Rik|A930023A16Rik|AW557951|G430067H08Rik	transmembrane protein 248	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-103367933-3	chr15	103367843	103368043	+	881.9166869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1152.0	NM_001314041	16402.0	Mm.16234	NM_010577	ENSMUSG00000000555	Itga5	Cd49e|Fnra|VLA5	integrin alpha 5 (fibronectin receptor alpha)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-28204340-4	chr2	28204258	28204458	+	757.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038613, intron 1 of 5)	intron (NM_001038613, intron 1 of 5)	-1331.0	NM_001038612	56177.0	Mm.43278	NM_019498	ENSMUSG00000026833	Olfm1	AMY|AW742568|Noe1|OlfA|Pancortin|Pancortin3	olfactomedin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-99985038-4	chr5	99984885	99985085	+	910.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6047.0	NM_001077267	11991.0	Mm.150231	NM_007516	ENSMUSG00000000568	Hnrnpd	Auf1|Hnrpd	heterogeneous nuclear ribonucleoprotein D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-78217883-4	chr16	78217806	78218006	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37548.0	NR_045698	100503619.0	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-65131699-2	chr18	65131599	65131799	+	651.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114386, intron 5 of 30)	intron (NM_001114386, intron 5 of 30)	108172.0	NM_031881	83814.0	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	-1.22315906685268	-1.19557143632602	-1.20673282037136	-0.55836125556573	-1.22265483704505	-1.19315271784257	-1.20420612767407	-1.21425999345206	-2.67891099987134	0.437057736398543	1
Merged-chr11-62576004-4	chr11	62575876	62576076	+	935.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_011706, exon 2 of 16)	5' UTR (NM_011706, exon 2 of 16)	1490.0	NM_011706	22368.0	Mm.288064	NM_011706	ENSMUSG00000018507	Trpv2	GRC|OTRPC2|VRL-1|Vrl1	transient receptor potential cation channel, subfamily V, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-73088918-1	chr11	73088818	73089018	+	544.0	f1_balb.idr	Intergenic	Intergenic	-1665.0	NM_001361245	16407.0	Mm.96	NM_008399	ENSMUSG00000005947	Itgae	A530055J10|CD103|aM290|alpha-E1|alpha-M290	integrin alpha E, epithelial-associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-103214397-3	chr3	103214296	103214496	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42741.0	NM_001356331	68183.0	Mm.104919	NM_026602	ENSMUSG00000005687	Bcas2	6430539P16Rik|AI132645|C76366|C80030	breast carcinoma amplified sequence 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-46204736-1	chr6	46204636	46204836	+	788.666687	f0_balb.idr	intron (NM_001004357, intron 9 of 23)	ORR1B2|LTR|ERVL-MaLR	-1039660.0	NM_025771	66797.0	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	1.54925953402449	1.98026822947797	1.1706154484641	1.13590504528208	1.90687207073734	3.35105801470475	3.23798920149751	2.70848956489264	3.31630632473373	0.000948703002106602	0.0186598993758607
Merged-chr10-79855094-4	chr10	79855001	79855201	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029447)	promoter-TSS (NR_029447)	-130.0	NR_029447	414101.0	Mm.401339	NR_029447	ENSMUSG00000091994	E130317F20Rik	-	RIKEN cDNA E130317F20 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-7820378-4	chr10	7820284	7820484	+	908.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026141, intron 12 of 12)	intron (NM_026141, intron 12 of 12)	-12086.0	NM_172785	237256.0	Mm.140055	NM_172785	ENSMUSG00000039981	Zc3h12d	D730019B10Rik|TFL	zinc finger CCCH type containing 12D	protein-coding	1.76937384560185	0.982966247429455	1.39359536425279	2.22260217741011	2.18367481273764	0.987630085153858	1.84162671131829	0.948080310133068	-0.178542795192638	0.891021256120589	0.998431161219273
Merged-chr5-66112239-4	chr5	66112148	66112348	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127382, intron 2 of 7)	intron (NM_001127382, intron 2 of 7)	-14069.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-22478352-3	chr9	22478255	22478455	+	953.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178415, intron 2 of 22)	intron (NM_178415, intron 2 of 22)	2640.0	NM_181316	319845.0	Mm.176725	NM_178415	ENSMUSG00000035919	Bbs9	E130103I17Rik	Bardet-Biedl syndrome 9 (human)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-106708491-3	chr4	106708378	106708578	+	766.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001126487, exon 8 of 24)	exon (NM_001126487, exon 8 of 24)	19452.0	NM_001126487	381538.0	Mm.318201	NM_001126487	ENSMUSG00000047502	Mroh7	Gm1027|Heatr8	maestro heat-like repeat family member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-87547606-4	chr6	87547532	87547732	+	943.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14373.0	NM_001286610	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	-1.00356377293102	-0.987150951819342	-0.998321543843311	-1.00048868285571	-0.745263436745829	-0.98473023792851	-0.680803940465498	-0.841775081918015	2.72292292274083	0.350446366542034	1
Merged-chr3-96570872-3	chr3	96570770	96570970	+	955.477783	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4069.0	NR_040409	100038464.0	Mm.475126	NR_040409	ENSMUSG00000074398	Gm15441	-	predicted gene 15441	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-168445610-2	chr2	168445510	168445710	+	767.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	144755.0	NM_001291178	18019.0	Mm.116802	NM_010899	ENSMUSG00000027544	Nfatc2	AI607462|NF-ATc2|NF-ATp|NFAT1|NFAT1-D|Nfatp	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-108692739-1	chr8	108692639	108692839	+	553.0	f0_balb.idr	Intergenic	Intergenic	-21905.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83794359-2	chr6	83794259	83794459	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019542)	promoter-TSS (NM_019542)	-89.0	NR_136916	665004.0		NR_136916		Gm7443	EG665004	ribosomal protein L27 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30415589-4	chr2	30415494	30415694	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138748)	promoter-TSS (NM_138748)	154.0	NM_007760	12908.0	Mm.20396	NM_007760	ENSMUSG00000026853	Crat	AW107812|CARAT	carnitine acetyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-139212553-4	chr7	139212452	139212652	+	994.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027164)	promoter-TSS (NM_027164)	-436.0	NM_027164	76612.0	Mm.17757	NM_027164	ENSMUSG00000015980	Lrrc27	1700071K18Rik|2310044E02Rik	leucine rich repeat containing 27	protein-coding	2.65927386493328	1.86381802318292	1.23575441152808	3.67074511757793	1.63668174156391	2.28501189312791	1.5550913686092	3.77278692949164	-0.0202899716579938	0.983856028232214	0.998431161219273
Merged-chr7-118117230-2	chr7	118117130	118117330	+	694.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-1083.0	NM_170669	267019.0	Mm.288212	NM_170669	ENSMUSG00000008683	Rps15a	A630031B11Rik	ribosomal protein S15A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80503005-2	chr10	80502905	80503105	+	590.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_139226, intron 1 of 1)	intron (NM_139226, intron 1 of 1)	8099.0	NM_139226	246086.0	Mm.250572	NM_139226	ENSMUSG00000045518	Onecut3	OC-3|Oc3	one cut domain, family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-134704363-3	chr5	134704251	134704451	+	812.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007925, intron 36 of 36)	intron (NM_007925, intron 36 of 36)	-15761.0	NM_010717	16885.0	Mm.15409	NM_010717	ENSMUSG00000029674	Limk1	KIZ-1|LIMK-1|Limk	LIM-domain containing, protein kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-108424419-2	chr3	108424319	108424519	+	584.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001204979)	TTS (NM_001204979)	-8925.0	NM_001004177	53883.0	Mm.39728	NM_017392	ENSMUSG00000068740	Celsr2	Adgrc2|EGFL2|Flamingo1|flamingo|mKIAA0279|mfmi1	cadherin, EGF LAG seven-pass G-type receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141795099-2	chr4	141794960	141795160	+	584.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355176, intron 1 of 8)	intron (NM_001355176, intron 1 of 8)	1448.0	NM_001277932	12371.0	Mm.88829	NM_015733	ENSMUSG00000028914	Casp9	AI115399|APAF-3|AW493809|CASP-9|Caspase-9|ICE-LAP6|Mch6	caspase 9	protein-coding	1.39467764572292	1.1137285486621	0.722258675681158	1.04433164625888	1.00016759723402	1.40077111463955	1.34564709484249	0.715242609205342	0.225692238078633	0.873960393894846	0.998431161219273
Merged-chr12-86891572-2	chr12	86891472	86891672	+	886.083374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6758.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91845715-2	chr16	91845615	91845815	+	718.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110275, intron 19 of 28)	ORR1G|LTR|ERVL-MaLR	85915.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131360286-2	chr1	131360186	131360386	+	848.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081011, intron 5 of 22)	intron (NM_001081011, intron 5 of 22)	-80723.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-62008083-2	chr15	62007983	62008183	+	886.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22742.0	NM_001177352	17869.0	Mm.2444	NM_010849	ENSMUSG00000022346	Myc	AU016757|Myc2|Niard|Nird|bHLHe39	myelocytomatosis oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-26849440-1	chr3	26849340	26849540	+	632.0	f1_balb.idr	intron (NM_029150, intron 5 of 10)	L1_Mus2|LINE|L1	211809.0	NM_027583	70862.0	Mm.330943	NM_027583	ENSMUSG00000039335	Spata16	4921511F01Rik|4930503K02Rik|Nyd-sp12	spermatogenesis associated 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-25264371-3	chr8	25264269	25264469	+	890.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	41901.0	NR_040352	74489.0	Mm.256468	NR_040352	ENSMUSG00000110140	5430421F17Rik	-	RIKEN cDNA 5430421F17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-38943456-3	chr18	38943362	38943562	+	911.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033789, intron 4 of 4)	intron (NM_001033789, intron 4 of 4)	-24763.0	NM_010197	14164.0	Mm.241282	NM_010197	ENSMUSG00000036585	Fgf1	Dffrx|Fam|Fgf-1|Fgfa	fibroblast growth factor 1	protein-coding	1.23938683655823	1.90009881208648	1.32626939601169	1.06771272062349	2.17704260982627	1.58565910284215	2.28736077207258	2.29550768051237	2.12448209981952	0.0540579610223037	0.340763966556357
Merged-chr6-134027222-4	chr6	134027105	134027305	+	988.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-8495.0	NM_001303102	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64722337-4	chr5	64722236	64722436	+	747.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1H|LTR|ERVL-MaLR	-81187.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	0.0575743958146349	-0.357209221576843	-0.36055259815303	-0.0897158636533556	-0.236419823261277	-0.356452004217378	-0.359817417130656	-0.0856114655683416	-0.875268768296879	0.714721821018261	1
Merged-chr6-30337097-4	chr6	30337034	30337234	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32595.0	NM_001169576	22214.0	Mm.332967	NM_009459	ENSMUSG00000039159	Ube2h	1500009C23Rik|AI181839|AI326965|AI462483|AW227540|E2-20K|Gid3|N28148|Ubc8	ubiquitin-conjugating enzyme E2H	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-7216457-2	chr9	7216357	7216557	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31952.0	NM_029775	76863.0	Mm.27293	NM_029775	ENSMUSG00000032002	Dcun1d5	3110001A18Rik|4833420K19Rik|AW060460|D430047L21Rik	DCN1, defective in cullin neddylation 1, domain containing 5 (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-28929990-3	chr16	28929897	28930097	+	828.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177718)	promoter-TSS (NM_177718)	-299.0	NM_177718	239796.0	Mm.155887	NM_177718	ENSMUSG00000051065	Mb21d2	1600021P15Rik|A430031N04|C87006	Mab-21 domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-138198322-4	chr3	138198203	138198403	+	806.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11590.0	NM_001163386	67741.0	Mm.383221	NM_001163385	ENSMUSG00000012042	4930579F01Rik	-	RIKEN cDNA 4930579F01 gene	protein-coding	2.26731965394741	2.38943918985982	2.76392718112763	2.25551138555992	2.8100353909636	2.40592854642095	2.87147605313867	2.50519430538194	0.507051795549869	0.500065870487449	0.938059363548374
Merged-chr14-120328581-2	chr14	120328481	120328681	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360376, intron 2 of 8)	intron (NM_001360376, intron 2 of 8)	22129.0	NM_001360376	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-47393919-3	chr14	47393826	47394026	+	843.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144553, intron 15 of 18)	PB1|SINE|Alu	20066.0	NM_001145953	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	-0.852376258653067	-0.835156229788835	-0.840936328385064	-0.845184054518198	-0.851294952271611	0.375545671077789	-0.83973335743148	-0.844437489302235	3.74591567714168	0.190027406988851	1
Merged-chr4-95152416-2	chr4	95152316	95152516	+	555.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-100194.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-87495163-1	chr16	87495063	87495263	+	943.0	f0_balb.idr	promoter-TSS (NR_040375)	promoter-TSS (NR_040375)	706.0	NM_009840	12469.0	Mm.328673	NM_009840	ENSMUSG00000025613	Cct8	AI132397|Cctq|Tcpq	chaperonin containing Tcp1, subunit 8 (theta)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139488470-2	chr5	139488370	139488570	+	958.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3979.0	NM_001159908	100494.0	Mm.24521	NM_133349	ENSMUSG00000053581	Zfand2a	AA407930|AU016206|Airap	zinc finger, AN1-type domain 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-35063286-2	chr15	35063186	35063386	+	563.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357821, intron 7 of 11)	L2a|LINE|L2	92520.0	NM_001357821	56274.0	Mm.262330	NM_019635	ENSMUSG00000022329	Stk3	0610042I06Rik|MST|Mst2|Mst3|Ste20|mess1	serine/threonine kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-137741447-6	chr5	137741294	137741494	+	983.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347505)	promoter-TSS (NM_001347505)	-226.0	NM_001347505	243300.0	Mm.74750	NM_175521	ENSMUSG00000045348	Nyap1	6430598A04Rik	neuronal tyrosine-phosphorylated phosphoinositide 3-kinase adaptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-17977041-4	chr13	17976938	17977138	+	971.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16313.0	NM_025904	67008.0	Mm.252918	NM_025904	ENSMUSG00000075054	Yae1d1	1600012F09Rik	Yae1 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28368266-2	chr7	28368166	28368366	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_138752, intron 7 of 18)	intron (NM_138752, intron 7 of 18)	4396.0	NM_138752	101497.0	Mm.235700	NM_138752	ENSMUSG00000037552	Plekhg2	AI194308|Clg|Cslg	pleckstrin homology domain containing, family G (with RhoGef domain) member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-29522234-4	chr19	29522128	29522328	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015567)	promoter-TSS (NR_015567)	-54.0	NM_001081319	226089.0	Mm.353838	NM_177641	ENSMUSG00000038658	Ric1	C030046E11Rik|C130057E09Rik|Kiaa1432	RAB6A GEF complex partner 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-63303023-1	chr13	63302923	63303123	+	798.0	f1_balb.idr	TTS (NR_110520)	TTS (NR_110520)	-1740.0	NR_037235	100526474.0		NR_037235	ENSMUSG00000092741	Mir3074-1	mmu-mir-3074-1	microRNA 3074-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-24026730-1	chr18	24026630	24026830	+	621.0	f1_c57bl6.idr	Intergenic	MLT2B3|LTR|ERVL	-5917.0	NM_021559	59057.0	Mm.417427	NM_021559	ENSMUSG00000051469	Zfp24	3526401F17Rik|5033419P20Rik|AI480505|AI642085|AL024422|KOX17|ZF-12|Zfp191|Znf24	zinc finger protein 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-51223297-2	chr3	51223197	51223397	+	995.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1150.0	NM_009834	12457.0	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-73439387-2	chr7	73439287	73439487	+	821.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081345, intron 37 of 38)	ORR1B1|LTR|ERVL-MaLR	-63613.0	NR_040324	319783.0	Mm.349813	NR_040324	ENSMUSG00000097756	A730056A06Rik	C76391	RIKEN cDNA A730056A06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34951002-4	chr17	34950966	34951166	+	834.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028527)	promoter-TSS (NR_028527)	-58.0	NR_028527	100217427.0		NR_028527	ENSMUSG00000093009	Snord52	MBII-297	small nucleolar RNA, C/D box 52	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97465700-2	chr6	97465630	97465830	+	613.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	-6444.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0.0613070542516116	0.0885280117319828	0.0797567497187791	0.0728942022952398	0.243751784755162	0.943705306651809	0.0817030661088713	1.17783539657058	4.42929848941977	0.0285136274110864	1
Merged-chr12-3909871-2	chr12	3909771	3909971	+	961.75	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001271753, exon 23 of 23)	3' UTR (NM_001271753, exon 23 of 23)	18127.0	NM_153743	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-25087145-3	chr5	25087062	25087262	+	788.399963	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145401, intron 1 of 15)	intron (NM_145401, intron 1 of 15)	13480.0	NM_145401	108099.0	Mm.33649	NM_145401	ENSMUSG00000028944	Prkag2	2410051C13Rik|AAKG|AAKG2|AI854673|H91620p|WPWS	protein kinase, AMP-activated, gamma 2 non-catalytic subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-67943377-4	chr5	67943307	67943507	+	783.520813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_038182)	promoter-TSS (NR_038182)	-326.0	NR_038182	73865.0	Mm.66946	NR_038182	ENSMUSG00000106880	4930425K10Rik	-	RIKEN cDNA 4930425K10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-103890003-2	chr14	103889903	103890103	+	620.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-45527.0	NM_001136061	13618.0	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-36334568-3	chr15	36334456	36334656	+	982.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51409.0	NM_001357631	30945.0	Mm.5181	NM_013923	ENSMUSG00000022280	Rnf19a	AA032313|Dorfin|Rnf19|UIP117|Ubce7ip2|XYbp	ring finger protein 19A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111163851-2	chr12	111163751	111163951	+	791.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_130987, intron 2 of 3)	PB1D10|SINE|Alu	-2519.0	NM_001286122	22031.0	Mm.27431	NM_011632	ENSMUSG00000021277	Traf3	AI528849|CAP-1|CD40bp|CRAF1|LAP1|T-BAM|amn	TNF receptor-associated factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120353841-4	chr11	120353731	120353931	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5153.0	NR_038126	66838.0	Mm.375010	NR_038126	ENSMUSG00000043644	0610009L18Rik	-	RIKEN cDNA 0610009L18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-48881125-4	chr7	48881025	48881225	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001013368)	promoter-TSS (NM_001013368)	-84.0	NM_001013368	108961.0	Mm.240566	NM_001013368	ENSMUSG00000046179	E2f8	4432406C08Rik|AA410048	E2F transcription factor 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129630273-1	chr2	129630173	129630373	+	840.0	f1_c57bl6.idr	3' UTR (NM_001291021, exon 6 of 6)	3' UTR (NM_001291021, exon 6 of 6)	34811.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	2.14367437476128	2.30152274440006	1.84958552300079	2.34736078224799	1.85595406712262	1.54816233182907	1.50782447184687	2.27016028053157	-0.898263574831483	0.346973368924357	0.847437850938575
Merged-chr6-57742980-2	chr6	57742880	57743080	+	827.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	MERVL_2A-int|LTR|ERVL	40525.0	NM_133737	71835.0	Mm.274904	NM_133737	ENSMUSG00000062190	Lancl2	1700003F10Rik	LanC (bacterial lantibiotic synthetase component C)-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-38183884-4	chr7	38183797	38183997	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_028166, exon 1 of 4)	5' UTR (NM_028166, exon 1 of 4)	110.0	NM_028166	72244.0	Mm.187554	NM_028166		1600014C10Rik	AI428873	RIKEN cDNA 1600014C10 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-17271491-4	chr12	17271372	17271572	+	914.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027959, intron 2 of 12)	ORR1D2|LTR|ERVL-MaLR	4877.0	NM_027959	71853.0	Mm.222825	NM_027959	ENSMUSG00000020571	Pdia6	1700015E05Rik|AL023058|C77895|CaBP5|P5|Txndc7	protein disulfide isomerase associated 6	protein-coding	1.06072466728246	1.82575197279747	2.45097330625701	1.43949419673789	2.66911741653813	1.24333686363046	3.84790836734661	3.73428603207734	2.67146348900984	0.00641008667163638	0.0801127290482222
Merged-chr1-151617863-2	chr1	151617763	151617963	+	610.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_022018, intron 1 of 13)	Lx2B2|LINE|L1	46490.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-127404154-1	chr1	127404054	127404254	+	578.0	f1_c57bl6.idr	intron (NM_145128, intron 11 of 17)	intron (NM_145128, intron 11 of 17)	199168.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-140790034-2	chr6	140789934	140790134	+	754.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	163149.0	NM_001309436	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106036811-4	chr11	106036722	106036922	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027946)	promoter-TSS (NM_027946)	-50.0	NM_027946	71833.0	Mm.307455	NM_027946	ENSMUSG00000049354	Dcaf7	1700012F10Rik|2610037L01Rik|C86529|HAN11|Wdr68	DDB1 and CUL4 associated factor 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-58485237-4	chr2	58485159	58485359	+	807.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355048, intron 3 of 10)	intron (NM_001355048, intron 3 of 10)	76151.0	NM_001355049	11477.0	Mm.689	NM_007394	ENSMUSG00000026836	Acvr1	ALK2|ActR-I|ActRIA|Acvr|Acvrlk2|Alk-2|Alk8|D330013D15Rik|SKR1|Tsk7L	activin A receptor, type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-5436180-4	chr2	5436078	5436278	+	889.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030601, intron 1 of 1)	intron (NR_030601, intron 1 of 1)	56788.0	NR_030601	100124465.0		NR_030601	ENSMUSG00000078031	Mir466d	Mirn466d	microRNA 466d	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-26890772-4	chr10	26890661	26890861	+	885.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176837, intron 12 of 14)	intron (NM_176837, intron 12 of 14)	118249.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-97310363-2	chr7	97310263	97310463	+	808.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001177412, exon 10 of 10)	exon (NM_001177412, exon 10 of 10)	15601.0	NM_001177412	244144.0	Mm.297541	NM_001177412	ENSMUSG00000035713	Usp35	Gm1088|Gm493	ubiquitin specific peptidase 35	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-67879501-4	chr8	67879395	67879595	+	895.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177698, intron 8 of 14)	intron (NM_177698, intron 8 of 14)	31451.0	NM_030263	234353.0	Mm.32525	NM_027626	ENSMUSG00000030465	Psd3	4931420C21Rik|AI661273|BC003498|D430018P08|EFA6D	pleckstrin and Sec7 domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-98846453-4	chr6	98846342	98846542	+	963.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	181856.0	NM_001197322	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-139068296-2	chr7	139068196	139068396	+	558.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028708, intron 19 of 19)	intron (NM_028708, intron 19 of 19)	-17705.0	NM_011993	26757.0	Mm.250414	NM_011993	ENSMUSG00000025478	Dpysl4	AI173505|CRMP-3|Crmp3|DPY4|Drp-4|Ulip4	dihydropyrimidinase-like 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-7018429-5	chr19	7018330	7018530	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362399, intron 2 of 14)	intron (NM_001362399, intron 2 of 14)	1039.0	NM_153795	108101.0	Mm.157591	NM_153795	ENSMUSG00000024965	Fermt3	C79673|Kindlin3	fermitin family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-38566436-2	chr18	38566336	38566536	+	618.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34832.0	NM_011898	24066.0	Mm.42038	NM_011898	ENSMUSG00000024427	Spry4	A030006O18Rik|sprouty4	sprouty RTK signaling antagonist 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85444858-4	chr12	85444749	85444949	+	942.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29041.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-67844306-4	chr13	67844217	67844417	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11587.0	NM_001309373	102637366.0	Mm.121460	NM_001015506	ENSMUSG00000058246	Gm10037	EG328280|Rslcan24	predicted gene 10037	protein-coding	4.55974692003014	3.89635309312656	4.9534978954626	4.10991322377263	3.70380778523592	2.88617021252267	2.93498852897219	4.18342845186616	-1.21542780422295	0.0177634575248923	0.164449045820724
Merged-chr6-17811226-4	chr6	17811147	17811347	+	976.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022332, intron 1 of 15)	RLTR40|LTR|ERVK	62077.0	NM_001083315	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-88253566-3	chr1	88253485	88253685	+	728.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001281466, intron 31 of 41)	intron (NM_001281466, intron 31 of 41)	15823.0	NR_040291	78605.0	Mm.384762	NR_040291		6430706D22Rik	-	RIKEN cDNA 6430706D22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-68898070-3	chr18	68897968	68898168	+	946.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038051, intron 3 of 6)	ORR1E|LTR|ERVL-MaLR	53460.0	NR_038051	78931.0	Mm.160155	NR_038051		4930546C10Rik	-	RIKEN cDNA 4930546C10 gene	ncRNA	2.7133770074378	1.67455718488762	3.29715654456348	2.07245520547883	3.78560001165736	3.85634332174608	4.59223521994412	3.86220166027183	2.29569900679524	0.000329613232840996	0.00788836349925453
Merged-chr11-59560457-2	chr11	59560357	59560557	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153314, intron 7 of 9)	RLTR9E|LTR|ERVK	11281.0	NM_001011789	257962.0	Mm.377316	NM_001011789	ENSMUSG00000059610	Olfr222	MOR256-45P	olfactory receptor 222	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-59161700-6	chr2	59161539	59161739	+	996.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001001178)	promoter-TSS (NM_001001178)	789.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-54734558-4	chr9	54734451	54734651	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023191)	promoter-TSS (NM_023191)	-2.0	NM_001025375	66317.0	Mm.28437	NM_023191	ENSMUSG00000061559	Wdr61	2700038L12Rik|2810418I05Rik|REC14	WD repeat domain 61	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-154547108-2	chr2	154547009	154547209	+	779.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_021546, exon 7 of 13)	exon (NM_021546, exon 7 of 13)	-1795.0	NM_029305	75480.0	Mm.440434	NM_029305	ENSMUSG00000038523	1700003F12Rik	-	RIKEN cDNA 1700003F12 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-34821606-4	chr1	34821523	34821723	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160236, intron 3 of 6)	L1ME2|LINE|L1	19901.0	NM_183019	226970.0	Mm.41604	NM_183019	ENSMUSG00000037509	Arhgef4	9330140K16Rik|Asef	Rho guanine nucleotide exchange factor (GEF) 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31017822-5	chr14	31017763	31017963	+	830.966675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_153547, exon 2 of 15)	exon (NM_153547, exon 2 of 15)	1268.0	NM_153547	30877.0	Mm.88512	NM_153547	ENSMUSG00000042354	Gnl3	Ns	guanine nucleotide binding protein-like 3 (nucleolar)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69073550-4	chr11	69073448	69073648	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_028566)	TTS (NR_028566)	122.0	NR_028566	100216530.0	Mm.453052	NR_028566	ENSMUSG00000064899	Snord118	MBI-34	small nucleolar RNA, C/D box 118	snoRNA	2.77434437048342	3.12412928874571	3.82489787976114	3.13624276526369	3.57209664446219	3.91366124438899	2.92010622034786	3.15252133467657	0.275805156700606	0.645026516986658	0.983701068654072
Merged-chr15-15658864-2	chr15	15658764	15658964	+	593.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-1119237.0	NM_009869	12565.0	Mm.439758	NM_009869	ENSMUSG00000025370	Cdh9	-	cadherin 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-172522716-4	chr1	172522592	172522792	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027972, intron 1 of 11)	intron (NM_027972, intron 1 of 11)	1562.0	NM_027972	71870.0	Mm.78373	NM_027972	ENSMUSG00000026546	Cfap45	1700028D05Rik|Ccdc19|Nesg1	cilia and flagella associated protein 45	protein-coding	1.11582856210219	1.55884025401234	1.90480747062649	1.75678407171992	0.781931874392798	1.07044823182807	1.22130455240903	0.801899897029695	-2.74047354597167	0.0474246835374895	0.315877879209548
Merged-chr2-69613497-4	chr2	69613397	69613597	+	999.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27430.0	NM_001081088	14725.0	Mm.23847	NM_001081088	ENSMUSG00000027070	Lrp2	AI315343|AW536255|D230004K18Rik|Gp330|Megalin|b2b1625.2Clo	low density lipoprotein receptor-related protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-115697923-4	chr6	115697807	115698007	+	959.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21272.0	NM_029780	110157.0	Mm.184163	NM_029780	ENSMUSG00000000441	Raf1	6430402F14Rik|AA990557|BB129353|Craf1|D830050J10Rik|Raf-1|c-Raf|cRaf|v-Raf	v-raf-leukemia viral oncogene 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-43091340-3	chr1	43091170	43091370	+	925.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013025, intron 2 of 12)	intron (NM_001013025, intron 2 of 12)	1216.0	NM_001357299	73122.0	Mm.246069	NM_001013025	ENSMUSG00000070939	Tgfbrap1	3110018K12Rik|AU024090|AU042859|AW742551|Trap1	transforming growth factor, beta receptor associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-13969179-4	chr10	13969080	13969280	+	851.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358782, intron 1 of 9)	intron (NM_001358782, intron 1 of 9)	2801.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-170254038-2	chr2	170253938	170254138	+	588.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-102323.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-120526447-4	chr5	120526346	120526546	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177595, intron 11 of 13)	intron (NM_001177595, intron 11 of 13)	15254.0	NM_001177594	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-87472332-4	chr12	87472233	87472433	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025507)	promoter-TSS (NM_025507)	-34.0	NM_025507	66354.0	Mm.271174	NM_025507	ENSMUSG00000021039	Snw1	2310008B08Rik|AW048543|NCoA-62|SKIP|Skiip	SNW domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25723544-2	chr7	25723444	25723644	+	553.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144922, intron 13 of 14)	B2_Mm2|SINE|B2	-4491.0	NM_028771	52132.0	Mm.278798	NM_028771	ENSMUSG00000002608	Ccdc97	1200014H14Rik|2810446P04Rik|AA545218|D7Ertd462e	coiled-coil domain containing 97	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-82969071-2	chr17	82968971	82969171	+	820.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1VL4|LINE|L1	109154.0	NR_045094	100503434.0	Mm.187281	NR_045094		Gm19689	-	predicted gene, 19689	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-99804404-4	chr6	99804326	99804526	+	807.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-78034.0	NM_001037539	50501.0	Mm.87365	NM_015768	ENSMUSG00000030069	Prok2	Bv8|PK2|Prok1	prokineticin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-194977288-5	chr1	194977225	194977425	+	889.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033564)	promoter-TSS (NR_033564)	-366.0	NR_033564	320400.0	Mm.417608	NR_033564	ENSMUSG00000097325	Gm16897	C030002c11rik	predicted gene, 16897	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152288108-4	chr1	152288020	152288220	+	889.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1E3|LTR|ERVL-MaLR	98562.0	NM_025677	66637.0	Mm.379120	NM_025677	ENSMUSG00000014980	Tsen15	5730449L18Rik|AL023077|Sen15	tRNA splicing endonuclease subunit 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-9678796-2	chr13	9678696	9678896	+	790.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	85014.0	NM_001347471	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-9738314-3	chr13	9738214	9738414	+	856.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347474, intron 1 of 14)	intron (NM_001347474, intron 1 of 14)	25496.0	NM_001347471	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-59236587-4	chr4	59236491	59236691	+	825.679199	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23460.0	NR_105031	101055769.0	Mm.421401	NR_105031		Gm12596	-	predicted gene 12596	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171637325-4	chr1	171637285	171637485	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_144539, exon 6 of 8)	exon (NM_144539, exon 6 of 8)	4515.0	NR_106151	102465784.0		NR_106151	ENSMUSG00000098316	Mir7683	Gm27950|mmu-mir-7683	microRNA 7683	ncRNA	4.11422347389045	3.36341429943704	4.77725751810819	4.58295329240417	4.09792363798039	4.70344232808964	3.49309557314512	3.88072281634134	-0.266488149864195	0.580611532352034	0.966599221005409
Merged-chr4-133440654-2	chr4	133440554	133440754	+	890.583374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39479.0	NM_175307	100342.0	Mm.204656	NM_175307	ENSMUSG00000046694	Fam46b	4732473B16Rik|AU045678|AU046069	family with sequence similarity 46, member B	protein-coding	1.21929675872078	3.11499552742294	1.04925743592434	2.50611944927214	1.75934261776004	1.09106007339449	2.52088860318532	1.51842243902346	-0.957058679304572	0.4030477267443	0.888600996964005
Merged-chr7-128520663-2	chr7	128520563	128520763	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A2|LTR|ERVL-MaLR	-2920.0	NM_013863	29810.0	Mm.84073	NM_013863	ENSMUSG00000030847	Bag3	AA407278|Bis|mg638	BCL2-associated athanogene 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-77741493-4	chr1	77741397	77741597	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER20A|LTR|ERVK	-226409.0	NM_007936	13838.0	Mm.400747	NM_007936	ENSMUSG00000026235	Epha4	2900005C20Rik|AI385584|Cek8|Hek8|Sek|Sek1|Tyro1|rb	Eph receptor A4	protein-coding	6.63343675343788	6.86647331150367	6.74613880004708	6.7601413656592	6.51009705382384	7.1448697634989	6.47438820258843	6.22209052136971	-0.136708978573651	0.522037087491548	0.947836760490745
Merged-chr15-83145089-2	chr15	83144989	83145189	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347082, intron 1 of 7)	intron (NM_001347082, intron 1 of 7)	4289.0	NM_178627	73826.0	Mm.23758	NM_178627	ENSMUSG00000041815	Poldip3	1110008P04Rik|AA408269|AL022852|C77954|PDIP46|SKAR|mKIAA1649	polymerase (DNA-directed), delta interacting protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80180027-4	chr7	80179989	80180189	+	878.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6752.0	NM_013659	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	3.18334894236274	2.63502186799288	2.67250730834617	3.66661738644162	2.4814406591577	2.13787623763254	2.91496917527308	2.34494021585046	-1.15615936650618	0.108434033744217	0.515448310960032
Merged-chr4-32984063-2	chr4	32983963	32984163	+	607.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027491, intron 1 of 6)	intron (NM_027491, intron 1 of 6)	1065.0	NM_027491	52187.0	Mm.300814	NM_027491	ENSMUSG00000028278	Rragd	5730543C08Rik|AI467523|C030003H22Rik|D4Ertd174e	Ras-related GTP binding D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-32795365-4	chr16	32795262	32795462	+	830.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145874, intron 1 of 3)	intron (NM_001145874, intron 1 of 3)	2073.0	NM_146071	224116.0	Mm.153301	NM_146071	ENSMUSG00000035638	Muc20	BC026367	mucin 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-85323893-1	chr1	85323793	85323993	+	670.0	f1_balb.idr	Intergenic	Intergenic	-53327.0	NM_001037909	620078.0	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik	RIKEN cDNA C130026I21 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-4427451-4	chr7	4427372	4427572	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001290409, exon 6 of 6)	3' UTR (NM_001290409, exon 6 of 6)	18185.0	NM_175372	108841.0	Mm.413106	NM_175372	ENSMUSG00000008435	Rdh13	8430425D21Rik	retinol dehydrogenase 13 (all-trans and 9-cis)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-144294150-2	chr2	144294050	144294250	+	750.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	23246.0	NM_001355688	74528.0	Mm.386817	NM_028984	ENSMUSG00000027424	Mgme1	8430406I07Rik|AI426476	mitochondrial genome maintenance exonuclease 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-23618527-1	chr5	23618427	23618627	+	676.0	f1_balb.idr	intron (NM_001359174, intron 2 of 16)	intron (NM_001359174, intron 2 of 16)	-1956.0	NM_009274	20817.0	Mm.288728	NM_009274	ENSMUSG00000062604	Srpk2	AW226533|AW492537|AW547358|Wbp6|mSRPK2	serine/arginine-rich protein specific kinase 2	protein-coding	-0.773269170465148	-0.536731853074065	-1.03283113491845	-1.03706869426034	-1.03996662017948	-1.01870368359699	-1.03020260335842	-1.0367099657609	-2.78541583542897	0.373634043026092	1
Merged-chr18-61632509-4	chr18	61632421	61632621	+	985.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7132.0	NR_045420	545261.0	Mm.426593	NR_045420	ENSMUSG00000098098	Bvht	Braveheart|Gm20748	braveheart long non-coding RNA	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-29858958-2	chr6	29858858	29859058	+	621.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001171001)	promoter-TSS (NM_001171001)	-638.0	NM_001171001	74340.0	Mm.210899	NM_021414	ENSMUSG00000029772	Ahcyl2	4631427C17Rik|AI227036|Adohcyase3|mKIAA0828	S-adenosylhomocysteine hydrolase-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-145745656-1	chr6	145745556	145745756	+	594.0	f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-62727.0	NM_027760	71323.0	Mm.158669	NM_027760	ENSMUSG00000030259	Rassf8	5133400D11Rik|AA815821|AW123240|Hoj1|mHoj-1	Ras association (RalGDS/AF-6) domain family (N-terminal) member 8	protein-coding	0.100011990349821	-0.381939349664428	-0.386603088501706	-0.390210399581215	-0.395321954651376	-0.380889879358863	0.422574782060094	-0.389579629483281	0.988093478769146	0.709927738748555	1
Merged-chr4-148903162-3	chr4	148903082	148903282	+	606.900024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027195, intron 4 of 15)	intron (NM_027195, intron 4 of 15)	49140.0	NR_154553	108168987.0	Mm.393596	NR_154553		Gm13205	AA408865	predicted gene 13205	ncRNA	-0.178584643804795	-0.158030627326763	-0.164689683400289	-0.169876179353641	0.473892062955757	-0.156539161655703	0.883301759253242	-0.16896696703687	4.13671187574688	0.0772162697992281	1
Merged-chr14-65098147-4	chr14	65098032	65098232	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018788)	promoter-TSS (NM_018788)	-26.0	NM_001360385	54616.0	Mm.103748	NM_018788	ENSMUSG00000021978	Extl3	2900009G18Rik|AU040105|Ext1l|mKIAA0519	exostoses (multiple)-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-115839725-2	chr6	115839625	115839825	+	917.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_010774)	TTS (NM_010774)	-1313.0	NM_001110506	212516.0	Mm.333333	NM_198603	ENSMUSG00000030321	Efcab12	BB124106	EF-hand calcium binding domain 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-92976893-1	chr14	92976793	92976993	+	550.0	f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	913776.0	NM_001271800	211712.0	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-75929826-4	chr15	75929733	75929933	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031201)	promoter-TSS (NM_031201)	-15.0	NM_001357005	22122.0	Mm.22596	NM_031201	ENSMUSG00000022570	Tsta3	AI256181|FX|Tstap35b	tissue specific transplantation antigen P35B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-116133239-2	chr6	116133139	116133339	+	699.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_177412, intron 3 of 5)	intron (NM_177412, intron 3 of 5)	60135.0	NM_177412	330401.0	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-65176352-4	chr13	65176242	65176442	+	870.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_175290)	TTS (NM_175290)	24116.0	NM_146819	258816.0	Mm.377705	NM_146819	ENSMUSG00000049806	Olfr466	MOR209-1	olfactory receptor 466	protein-coding	-0.539072095141396	-1.17607782048307	-1.18720726126045	-1.19634931528472	-1.20196491063698	-1.17366602423904	-1.18468779981884	-1.19471289198531	-2.68787187143179	0.435473844436726	1
Merged-chr13-37678148-4	chr13	37678051	37678251	+	921.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-147887.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75489760-2	chr11	75489660	75489860	+	835.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_138659, exon 3 of 42)	exon (NM_138659, exon 3 of 42)	2983.0	NM_138659	192159.0	Mm.3757	NM_138659	ENSMUSG00000020850	Prpf8	AU019467|D11Bwg0410e|DBF3/PRP8|Prp8|Sfprp8l	pre-mRNA processing factor 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-29385127-4	chr19	29385022	29385222	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021893, intron 6 of 6)	intron (NM_021893, intron 6 of 6)	17684.0	NM_021893	60533.0	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-17629920-4	chr10	17629822	17630022	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-93306.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	-0.151591052260365	-0.130940799197888	0.714739633291343	-0.142844897156857	-0.150282248982373	-0.12944136653855	0.729351554324659	-0.141931488452262	0.041083046276385	0.986412301813541	1
Merged-chr3-137848551-4	chr3	137848444	137848644	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15943.0	NM_001316995	51788.0	Mm.117541	NM_016750	ENSMUSG00000037894	H2afz	H2A.Z|H2a.z-1	H2A histone family, member Z	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-135671472-2	chr7	135671372	135671572	+	873.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001316681, intron 12 of 17)	intron (NM_001316681, intron 12 of 17)	-19158.0	NR_015548	67765.0	Mm.445272	NR_015548	ENSMUSG00000097471	5830432E09Rik	-	RIKEN cDNA 5830432E09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-93797551-4	chr16	93797427	93797627	+	898.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027293, intron 27 of 36)	intron (NM_027293, intron 27 of 36)	-2626.0	NR_151466	102633000.0	Mm.443436	NR_151466		2310043M15Rik	-	RIKEN cDNA 2310043M15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-92635865-3	chr13	92635754	92635954	+	620.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172588, intron 1 of 11)	ORR1D1|LTR|ERVL-MaLR	24716.0	NM_172588	218442.0	Mm.297970	NM_172588	ENSMUSG00000021703	Serinc5	A130038L21Rik|AIGP3|C86123|TPO1	serine incorporator 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72753037-4	chr6	72752945	72753145	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001079822, intron 3 of 12)	intron (NM_001079822, intron 3 of 12)	36000.0	NM_001079822	21415.0	Mm.440067	NM_009332	ENSMUSG00000055799	Tcf7l1	Tcf-3|Tcf3|bHLHb21	transcription factor 7 like 1 (T cell specific, HMG box)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-31285346-3	chr16	31285251	31285451	+	896.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10074.0	NM_025800	66849.0	Mm.291593	NM_025800	ENSMUSG00000047714	Ppp1r2	0610025N14Rik|2310007G06Rik|4930440J04Rik|5430408E15Rik|D16Ertd248e|I-2|IPP-2	protein phosphatase 1, regulatory (inhibitor) subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-127320184-1	chr1	127320084	127320284	+	554.0	f1_c57bl6.idr	intron (NM_145128, intron 3 of 17)	B4A|SINE|B4	115198.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-103499077-2	chr15	103498977	103499177	+	581.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_153505)	TTS (NM_153505)	-3957.0	NM_008800	18574.0	Mm.390792	NM_008800	ENSMUSG00000022489	Pde1b	Pde1b1	phosphodiesterase 1B, Ca2+-calmodulin dependent	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-116384371-4	chr9	116384269	116384469	+	960.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	195189.0	NR_152204	100043817.0	Mm.404276	NR_152204		Gm4668	-	predicted gene 4668	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-116951549-4	chr13	116951456	116951656	+	966.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081009, intron 3 of 26)	intron (NM_001081009, intron 3 of 26)	73960.0	NM_001081009	52552.0	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	3.85051747989921	3.99384350824317	4.09766911636307	3.69917816667296	3.33230470554733	3.3528849899446	3.52735242089969	2.62017303111713	-1.00810190056102	0.0534485444275466	0.33847839990981
Merged-chr15-84245486-2	chr15	84245386	84245586	+	849.3000490000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_133167, intron 1 of 12)	intron (NM_133167, intron 1 of 12)	13443.0	NM_133167	170736.0	Mm.323892	NM_133167	ENSMUSG00000022438	Parvb	AI595373|AW742462|D15Gsk1|affixin	parvin, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-154826019-2	chr4	154825919	154826119	+	782.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30181.0	NM_172878	242800.0	Mm.72944	NM_172878	ENSMUSG00000046637	Ttc34	4932418L02|B230396O12Rik	tetratricopeptide repeat domain 34	protein-coding	2.61707413113947	2.04783994648228	2.10474546057851	1.63363389428609	1.95840539300885	1.28338388307843	2.12123983043471	1.93503597396375	-0.775337271252116	0.433524738873541	0.905745034524566
Merged-chr13-109287028-1	chr13	109286928	109287128	+	544.0	f1_c57bl6.idr	intron (NM_011056, intron 3 of 16)	MIR3|SINE|MIR	-37716.0	NR_030644	100124489.0		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-84441263-4	chr10	84441142	84441342	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001004363)	promoter-TSS (NM_001004363)	-771.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-5130316-4	chr2	5130215	5130415	+	815.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7461.0	NM_028804	74186.0	Mm.274715	NM_028804	ENSMUSG00000026676	Ccdc3	2310045O21Rik	coiled-coil domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-11555376-4	chr8	11555280	11555480	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302458)	promoter-TSS (NM_001302458)	-382.0	NM_001302458	26356.0	Mm.25709	NM_011919	ENSMUSG00000045969	Ing1	2610028J21Rik|AA407184|AI875420|mING1h|p33Ing1|p37Ing1b	inhibitor of growth family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-17598685-4	chr6	17598601	17598801	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38309.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-54967676-2	chr6	54967576	54967776	+	835.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_172729, intron 1 of 11)	intron (NM_172729, intron 1 of 11)	3985.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116681160-4	chr11	116681070	116681270	+	963.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009180, intron 6 of 8)	intron (NM_009180, intron 6 of 8)	6573.0	NR_028570	100216538.0		NR_028570	ENSMUSG00000065094	Snord1a	snR38	small nucleolar RNA, C/D box 1A	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-101768098-4	chr5	101767937	101768137	+	835.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173370, intron 1 of 12)	intron (NM_173370, intron 1 of 12)	2907.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-30066508-4	chr16	30066399	30066599	+	992.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008235, intron 3 of 3)	CpG	1142.0	NM_008235	15205.0	Mm.390859	NM_008235	ENSMUSG00000022528	Hes1	Hry|bHLHb39	hes family bHLH transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134079772-4	chr6	134079651	134079851	+	859.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 2 of 8)	intron (NM_001303102, intron 2 of 8)	44051.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-46787316-2	chr11	46787216	46787416	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-23483.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-25746000-3	chr8	25745900	25746100	+	864.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361595, intron 7 of 15)	RLTR31D_MM|LTR|ERVK	8280.0	NM_028102	72108.0	Mm.246875	NM_028102	ENSMUSG00000061313	Ddhd2	2010305K11Rik|SAMWD1|mKIAA0725	DDHD domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-57357803-4	chr17	57357719	57357919	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355723)	promoter-TSS (NM_001355723)	-867.0	NM_001355723	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-34207123-2	chr5	34207023	34207223	+	617.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001015039, intron 8 of 12)	intron (NM_001015039, intron 8 of 12)	-19413.0	NM_010753	17122.0	Mm.259260	NM_010753	ENSMUSG00000037235	Mxd4	2810410A03Rik|Mad4|bHLHc12	Max dimerization protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-30623863-2	chr14	30623759	30623959	+	597.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011103, intron 1 of 17)	intron (NM_011103, intron 1 of 17)	2349.0	NM_011103	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-23195818-3	chr16	23195717	23195917	+	730.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155420, intron 2 of 2)	MTE-int|LTR|ERVL-MaLR	20537.0	NR_155420	105246089.0	Mm.390905	NR_155420		C730014E05Rik	-	RIKEN cDNA C730014E05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-15077275-2	chr15	15077175	15077375	+	561.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	-1700826.0	NM_009869	12565.0	Mm.439758	NM_009869	ENSMUSG00000025370	Cdh9	-	cadherin 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-54087895-2	chr11	54087795	54087995	+	690.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13029.0	NM_001136076	18452.0	Mm.3705	NM_011031	ENSMUSG00000018906	P4ha2	AA407196|C76437|P4hl	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-34084926-2	chr11	34084826	34085026	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010696, intron 17 of 20)	intron (NM_010696, intron 17 of 20)	13628.0	NR_155520	76874.0	Mm.437529	NR_155520		4930469K13Rik	-	RIKEN cDNA 4930469K13 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16257454-3	chr7	16257341	16257541	+	917.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001173550, intron 1 of 1)	B2_Mm2|SINE|B2	1897.0	NM_001173550	12273.0	Mm.247623	NM_007577	ENSMUSG00000049130	C5ar1	C5aR|C5r1|Cd88|D7Msu1	complement component 5a receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-106681434-4	chr14	106681334	106681534	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-194914.0	NR_045938	73631.0	Mm.48862	NR_045938	ENSMUSG00000099794	1700128A07Rik	-	RIKEN cDNA 1700128A07 gene	ncRNA	-1.26571374789235	-1.51209590594483	-1.52146493977932	-1.38174326885381	-1.5409024774237	-1.51006559722904	-1.51934399588257	-1.52778336220656	-1.78996300869195	0.608863169873916	1
Merged-chr8-105374812-4	chr8	105374735	105374935	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081333)	promoter-TSS (NM_001081333)	-546.0	NM_001081333	102075.0	Mm.32034	NM_175321	ENSMUSG00000014782	Plekhg4	4931414L13Rik|AI448583|mFLJ00068	pleckstrin homology domain containing, family G (with RhoGef domain) member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-9071149-4	chr15	9071067	9071267	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286255)	promoter-TSS (NM_001286255)	-93.0	NM_001286255	68646.0	Mm.244226	NM_001040395	ENSMUSG00000022253	Nadk2	MNADK|Nadkd1	NAD kinase 2, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-76202026-4	chr11	76201918	76202118	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027773)	promoter-TSS (NM_027773)	-38.0	NM_027773	116972.0	Mm.188413	NM_027773	ENSMUSG00000069808	Fam57a	2310047D13Rik|4932415L08Rik|5430402E13Rik|5430420K21Rik|Wdt3	family with sequence similarity 57, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-118301373-4	chr12	118301288	118301488	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009239)	promoter-TSS (NM_009239)	52.0	NM_009239	20688.0	Mm.34699	NM_009239	ENSMUSG00000025323	Sp4	5730497N03Rik|HF-1b|HF1-b	trans-acting transcription factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-5777951-2	chr13	5777851	5778051	+	625.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER5A1|DNA|hAT-Charlie	80141.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-60714992-1	chr13	60714892	60715092	+	547.0	f1_balb.idr	intron (NM_134062, intron 3 of 26)	intron (NM_134062, intron 3 of 26)	71372.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	1.43621011226388	1.13945615395957	0.720600050846553	0.710579913791977	1.14565815567964	1.66983011137307	0.723440588368024	1.44263386695191	1.0053427146105	0.496837666609843	0.936897994490085
Merged-chr2-170132195-3	chr2	170132072	170132272	+	932.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033299)	promoter-TSS (NM_001033299)	-952.0	NM_001033299	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83906845-4	chr6	83906745	83906945	+	997.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	-7508.0	NM_001166371	18139.0	Mm.132392	NM_008717	ENSMUSG00000030016	Zfp638	AI323587|Np220|Zfml|Znf638|mNP220	zinc finger protein 638	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91265155-4	chr2	91265068	91265268	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166024)	promoter-TSS (NM_001166024)	53.0	NM_023854	77038.0	Mm.43636	NM_023854	ENSMUSG00000027255	Arfgap2	2310032E02Rik|Zfp289	ADP-ribosylation factor GTPase activating protein 2	protein-coding	6.09212607530121	6.02232762924986	6.27457112401941	6.35800300738399	6.28480918586942	6.31470188616741	6.14809069782788	6.52210297373811	0.142072367702254	0.501852827750003	0.938491965352433
Merged-chr12-73688624-2	chr12	73688524	73688724	+	958.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008856, intron 2 of 13)	intron (NM_008856, intron 2 of 13)	103828.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-32492546-3	chr17	32492380	32492580	+	971.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177307, exon 14 of 14)	3' UTR (NM_177307, exon 14 of 14)	-13982.0	NM_001101445	208285.0	Mm.311422	NM_001101445	ENSMUSG00000091586	Cyp4f17	EG208285	cytochrome P450, family 4, subfamily f, polypeptide 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-57073008-2	chr19	57072944	57073144	+	590.833374	f0_balb.idr|f1_balb.idr	intron (NM_001103177, intron 8 of 21)	intron (NM_001103177, intron 8 of 21)	45980.0	NM_001347459	226251.0	Mm.217161	NM_178688	ENSMUSG00000025085	Ablim1	2210411C18Rik|2610209L21Rik|4833406P10Rik|9330196J19Rik|AV079770|AW060987|AW215784|Limab1|mKIAA0059	actin-binding LIM protein 1	protein-coding	3.51020569152851	3.24500042500217	3.03316323049222	1.58028265413726	3.08009035511767	2.78683603868244	3.34017668554475	3.95751953604131	0.563044275296849	0.432537305471133	0.904738945439794
Merged-chr3-108383704-4	chr3	108383579	108383779	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040560)	promoter-TSS (NR_040560)	62.0	NR_040560	100038453.0	Mm.214328	NR_040560	ENSMUSG00000074281	Gm12522	-	predicted gene 12522	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-136116483-2	chr4	136116421	136116621	+	964.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-27301.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	0.821200112826398	2.69626728249283	0.882506724102728	1.91504653297366	1.26392329630639	0.916191633201457	1.3887594841531	2.45791857239909	-0.430482997625233	0.742277005333519	0.998431161219273
Merged-chr8-123021933-3	chr8	123021819	123022019	+	809.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 1 of 12)	intron (NM_001081379, intron 1 of 12)	20365.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-48838388-2	chr13	48838288	48838488	+	701.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011078, intron 1 of 21)	L1MB8|LINE|L1	32497.0	NM_011078	18676.0	Mm.486213	NM_011078	ENSMUSG00000038025	Phf2	GRC5	PHD finger protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-25101372-4	chr5	25101275	25101475	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145401)	promoter-TSS (NM_145401)	400.0	NR_027851	67261.0	Mm.461781	NM_026059	ENSMUSG00000043833	2900005J15Rik	-	RIKEN cDNA 2900005J15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115635706-4	chr5	115635600	115635800	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198163, intron 1 of 5)	intron (NM_198163, intron 1 of 5)	3713.0	NM_198163	77407.0	Mm.27553	NM_198163	ENSMUSG00000029518	Rab35	9530019H02Rik|AU040256|H-ray|RAB1C|RAY	RAB35, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-78204629-2	chr17	78204506	78204706	+	889.291626	f1_balb.idr|f1_c57bl6.idr	intron (NM_015800, intron 1 of 16)	intron (NM_015800, intron 1 of 16)	4358.0	NM_015800	50766.0	Mm.311912	NM_015800	ENSMUSG00000024074	Crim1	AU015004	cysteine rich transmembrane BMP regulator 1 (chordin like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-92494426-2	chr5	92494326	92494526	+	661.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007644, intron 1 of 11)	intron (NM_007644, intron 1 of 11)	11231.0	NM_007644	12492.0	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-40609912-3	chr8	40609779	40609979	+	831.0	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	intron (NM_001040699, intron 1 of 13)	B3A|SINE|B2	24913.0	NM_001040699	54384.0	Mm.294871	NM_019433	ENSMUSG00000039431	Mtmr7	-	myotubularin related protein 7	protein-coding	3.07751956527499	2.6790239754751	2.70000684615085	2.12327286416415	2.30146711009125	2.9150228251608	2.4889641300087	2.41449192504219	-0.306052617440844	0.684220248215321	0.996533206832645
Merged-chr11-103328686-2	chr11	103328586	103328786	+	761.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16016.0	NM_133715	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	1.60653880786066	1.05510070923546	2.1676318420119	1.81318308706297	1.62019897435398	1.05960260555265	2.18613406468436	1.41865571928721	-0.237822052198663	0.840939859195867	0.998431161219273
Merged-chr4-134186555-2	chr4	134186454	134186654	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144527, intron 1 of 13)	CpG	531.0	NM_144527	70012.0	Mm.26542	NM_144527	ENSMUSG00000037443	Cep85	2410030J07Rik|AI173272|AI173504|Ccdc21	centrosomal protein 85	protein-coding	1.74258442692615	0.776361048785476	0.764283011509262	1.3476422181029	1.28227834442415	0.997218374316608	1.13649694620743	1.23675556205999	-0.315497163108254	0.821225827986859	0.998431161219273
Merged-chr4-126819477-4	chr4	126819385	126819585	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001035525, intron 5 of 23)	intron (NM_001035525, intron 5 of 23)	65715.0	NM_001035526	100317.0	Mm.206206	NM_133886	ENSMUSG00000028830	AU040320	A730047D20Rik|AAVR|Kiaa0319l	expressed sequence AU040320	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-116638147-4	chr3	116638027	116638227	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008246, intron 8 of 11)	intron (NM_008246, intron 8 of 11)	-23540.0	NM_030016	229780.0	Mm.259648	NM_030016	ENSMUSG00000033439	Trmt13	4631408H19Rik|A330067P21|A930028L21Rik|Ccdc76	tRNA methyltransferase 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-149144608-4	chr4	149144484	149144684	+	915.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6984.0	NM_027263	69928.0	Mm.260893	NM_027263	ENSMUSG00000073705	Cenps	2610040C18Rik|2810407L01Rik|Apitd1|CENP-S	centromere protein S	protein-coding	4.61213622695376	4.0485966990708	2.61815725848183	4.92942475267036	5.11868866844897	3.82471758065325	3.38354134978814	5.04239646371201	0.319461526814567	0.570382455648247	0.962718661854691
Merged-chr9-77915030-2	chr9	77914930	77915130	+	649.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2335.0	NM_134255	68801.0	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-41740986-4	chr4	41740881	41741081	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286605, intron 1 of 3)	CpG-9828	378.0	NM_001286540	18391.0	Mm.425181	NM_011014	ENSMUSG00000036078	Sigmar1	Oprs1|Sig1R|sigma1R	sigma non-opioid intracellular receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-118981610-4	chr10	118981494	118981694	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54451.0	NR_110482	216377.0	Mm.208936	NR_110482	ENSMUSG00000112854	Gm38403	C230029M16	predicted gene, 38403	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-72987928-2	chr16	72987828	72988028	+	578.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019413, intron 16 of 28)	B1_Mus1|SINE|Alu	324779.0	NM_019413	19876.0	Mm.310772	NM_019413	ENSMUSG00000022883	Robo1	AW494633|AW742721|DUTT1|Gm310	roundabout guidance receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-96164111-6	chr5	96163935	96164135	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2045.0	NM_144910	231464.0	Mm.28374	NM_144910	ENSMUSG00000034724	Cnot6l	4932442K20Rik	CCR4-NOT transcription complex, subunit 6-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-27197256-2	chr9	27197156	27197356	+	667.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	-41835.0	NM_023277	83964.0	Mm.28770	NM_023277	ENSMUSG00000031990	Jam3	1110002N23Rik|JAM-3|JAM-C|Jcam3	junction adhesion molecule 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-82387238-2	chr12	82387138	82387338	+	771.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001167983, intron 9 of 23)	intron (NM_001167983, intron 9 of 23)	75889.0	NM_172579	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-45889152-3	chr13	45889051	45889251	+	927.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199304, intron 2 of 6)	(CA)n|Simple_repeat|Simple_repeat	75840.0	NM_001199304	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-49201270-3	chr11	49201171	49201371	+	900.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2229.0	NM_001024846	22720.0	Mm.16650	NM_009562	ENSMUSG00000046311	Zfp62	-	zinc finger protein 62	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-25211975-2	chr12	25211875	25212075	+	765.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	82801.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-84710371-2	chr1	84710271	84710471	+	590.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14150.0	NM_152915	227325.0	Mm.292560	NM_152915	ENSMUSG00000036766	Dner	A930026D19Rik|BET|Bret	delta/notch-like EGF repeat containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132505475-4	chr4	132505381	132505581	+	963.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144907, intron 1 of 9)	intron (NM_144907, intron 1 of 9)	4975.0	NM_144907	230784.0	Mm.23608	NM_144907	ENSMUSG00000028893	Sesn2	HI95|SEST2|Ses2	sestrin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-25840765-4	chr8	25840680	25840880	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011791)	promoter-TSS (NM_011791)	7.0	NM_001359012	23808.0	Mm.27706	NM_011791	ENSMUSG00000031575	Ash2l	-	ASH2 like histone lysine methyltransferase complex subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-80842096-2	chr1	80841996	80842196	+	750.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-83543.0	NM_175291	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75529587-1	chr11	75529487	75529687	+	544.0	f1_c57bl6.idr	Intergenic	Intergenic	-2107.0	NM_001199284	215113.0	Mm.11186	NM_173388	ENSMUSG00000038178	Slc43a2	7630402D21Rik|BC042513|Lat4	solute carrier family 43, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-154817920-2	chr3	154817820	154818020	+	704.083313	f1_balb.idr|f1_c57bl6.idr	intron (NM_177066, intron 23 of 24)	intron (NM_177066, intron 23 of 24)	106787.0	NM_175176	209601.0	Mm.331454	NM_175176	ENSMUSG00000078161	Erich3	1700013E18Rik|4922501L14Rik|5031409G23Rik|AI596448|Gm133	glutamate rich 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75468451-2	chr11	75468351	75468551	+	671.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027249, intron 1 of 4)	intron (NM_027249, intron 1 of 4)	401.0	NM_027249	380712.0	Mm.41393	NM_027249	ENSMUSG00000038217	Tlcd2	-	TLC domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-43574539-2	chr16	43574439	43574639	+	645.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285805, intron 7 of 10)	intron (NM_001285805, intron 7 of 10)	-66116.0	NR_030576	100124467.0		NR_030576	ENSMUSG00000076372	Mir568	Mirn568|mmu-mir-568	microRNA 568	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-29434392-2	chr17	29434300	29434500	+	705.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-56645.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	1.21670052320854	2.42704089594093	1.12531139507671	1.28742478735662	1.7357180028971	2.09556431907493	0.88124798231638	0.861775518536429	-0.379445982252834	0.766752095893376	0.998431161219273
Merged-chr17-33685467-4	chr17	33685365	33685565	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029804)	promoter-TSS (NM_029804)	-7.0	NM_029804	76936.0	Mm.311439	NM_029804	ENSMUSG00000059208	Hnrnpm	2610023M21Rik|AA409009|Hnrpm|mKIAA4193	heterogeneous nuclear ribonucleoprotein M	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-72963597-1	chr1	72963497	72963697	+	879.0	f0_balb.idr	Intergenic	Intergenic	52302.0	NM_009407	21958.0	Mm.425024	NM_009407	ENSMUSG00000026182	Tnp1	Stp-1|TP1|Tp-1	transition protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-102478340-2	chr11	102478240	102478440	+	679.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001159492, exon 8 of 8)	exon (NM_001159492, exon 8 of 8)	-8457.0	NM_010575	16399.0	Mm.26646	NM_010575	ENSMUSG00000034664	Itga2b	AI172977|CD41|CD41B|GpIIb|alphaIIb	integrin alpha 2b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-97825194-4	chr15	97825091	97825291	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001204280, intron 1 of 21)	intron (NM_001204280, intron 1 of 21)	6576.0	NM_019572	56233.0	Mm.384027	NM_019572	ENSMUSG00000022475	Hdac7	5830434K02Rik|HD7|HD7a|Hdac7a|mFLJ00062	histone deacetylase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-17508746-1	chr6	17508646	17508846	+	898.25	f0_balb.idr	intron (NM_008591, intron 3 of 21)	intron (NM_008591, intron 3 of 21)	44789.0	NM_008591	17295.0	Mm.86844	NM_008591	ENSMUSG00000009376	Met	AI838057|HGF|HGFR|Par4|c-Met	met proto-oncogene	protein-coding	0.505572548461856	0.382454041044515	0.834935338342314	0.369604210502398	0.361673145885744	1.01174897787319	0.844749434294491	0.806336644996934	1.4724541544532	0.402549775104517	1
Merged-chr1-132316061-4	chr1	132315919	132316119	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028778)	promoter-TSS (NM_028778)	-106.0	NM_001195025	74137.0	Mm.100666	NM_028778	ENSMUSG00000009772	Nuak2	1200013B22Rik|Omphk2|Snark|mKIAA0537	NUAK family, SNF1-like kinase, 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-10992245-4	chr16	10992150	10992350	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019980, intron 1 of 3)	intron (NM_019980, intron 1 of 3)	871.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-25512457-2	chr9	25512357	25512557	+	627.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 2 of 7)	intron (NM_026189, intron 2 of 7)	30860.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-21645858-4	chr5	21645755	21645955	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177076)	promoter-TSS (NM_177076)	-129.0	NM_026034	67211.0	Mm.260782	NM_026034	ENSMUSG00000038525	Armc10	2810037C14Rik|Svh	armadillo repeat containing 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34071248-1	chr17	34071148	34071348	+	884.0	f1_c57bl6.idr	Intergenic	Intergenic	-21131.0	NM_008206	15001.0	Mm.116	NM_008206	ENSMUSG00000024334	H2-Oa	H-2Oa	histocompatibility 2, O region alpha locus	protein-coding	0.252024808434437	0.994592481110988	0.272681222433178	0.264999298959771	0.253973125547257	1.00717317016118	1.26468237329794	0.26634832885488	1.43336139675422	0.466746049475332	1
Merged-chr1-121440802-4	chr1	121440693	121440893	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029955, intron 3 of 23)	MTD|LTR|ERVL-MaLR	9726.0	NM_029955	70829.0	Mm.25788	NM_027567	ENSMUSG00000026339	Ccdc93	4633402D15Rik|9230102M16Rik	coiled-coil domain containing 93	protein-coding	3.05947604135513	3.34386709278101	4.27414056866921	3.01916695665483	3.08665243065749	3.97969429733171	4.30441925399304	3.86575594481113	0.497818164156778	0.378104045960734	0.871285341249083
Merged-chr15-57698215-2	chr15	57698115	57698315	+	881.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_199449, intron 1 of 3)	intron (NM_199449, intron 1 of 3)	3548.0	NM_199449	387609.0	Mm.36557	NM_199449	ENSMUSG00000071757	Zhx2	Afr-1|Afr1|Raf|mKIAA0854	zinc fingers and homeoboxes 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-107244274-2	chr11	107244174	107244374	+	949.333374	f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 6 of 9)	intron (NR_153311, intron 6 of 9)	-54893.0	NM_001161329	68979.0	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-87246027-4	chr17	87245934	87246134	+	893.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19913.0	NM_176808	193813.0	Mm.30251	NM_139295	ENSMUSG00000024150	Mcfd2	1810021C21Rik|F5f8d|Lman1ip|Sdnsf	multiple coagulation factor deficiency 2	protein-coding	2.6544098214824	3.6630090992071	2.88611670696242	3.5189677042224	3.43664165630932	3.61206431024606	3.02905562518615	3.31430677060793	0.195841242387985	0.741895323183603	0.998431161219273
Merged-chr7-19323263-2	chr7	19323167	19323367	+	591.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-13222.0	NM_001347586	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	0.626421402657096	0.146994606272847	0.14015555397006	0.697100376899966	0.127323748212531	0.148531422655061	0.141667009543077	0.98178584364314	-0.0484520936896438	0.981776941156834	1
Merged-chr19-46528778-6	chr19	46528625	46528825	+	963.861084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27077.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	1.63603426011294	1.31626729329749	3.37110551964295	1.23965272249736	2.84324913255622	2.76547511950979	2.66776370408771	2.2353307850252	0.732824750670505	0.466792034174059	0.923362083397688
Merged-chr19-45084584-2	chr19	45084484	45084684	+	770.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8497.0	NM_001362397	107250.0	Mm.24417	NM_178929	ENSMUSG00000025213	Kazald1	AI842353|Bono1|IGFBP-rP10	Kazal-type serine peptidase inhibitor domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117830063-4	chr11	117829952	117830152	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027827, intron 2 of 10)	intron (NM_027827, intron 2 of 10)	-4038.0	NM_009387	21877.0	Mm.2661	NM_009387	ENSMUSG00000025574	Tk1	D530002A18Rik|Tk-1|Tk1a|Tk1b	thymidine kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-15542481-2	chr15	15542381	15542581	+	577.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MMERVK9E_I-int|LTR|ERVK	-1235620.0	NM_009869	12565.0	Mm.439758	NM_009869	ENSMUSG00000025370	Cdh9	-	cadherin 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-31918739-6	chr18	31918593	31918793	+	968.4097289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6790.0	NM_026006	67158.0	Mm.31537	NM_026006	ENSMUSG00000044982	Sft2d3	2610206C24Rik|AI847965|AW046173	SFT2 domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116621451-4	chr11	116621370	116621570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172572, intron 1 of 18)	intron (NM_172572, intron 1 of 18)	2782.0	NM_001167680	217344.0	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-63046555-4	chr11	63046443	63046643	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15116.0	NM_027660	71062.0	Mm.23534	NM_027660	ENSMUSG00000042189	Tekt3	4933407G07Rik	tektin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-71353903-3	chr10	71353809	71354009	+	972.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027184, intron 1 of 5)	intron (NM_027184, intron 1 of 5)	6146.0	NM_027184	69718.0	Mm.245867	NM_027184	ENSMUSG00000060733	Ipmk	2410017C19Rik|AA408208|Impk	inositol polyphosphate multikinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-13836112-2	chr17	13836012	13836212	+	671.916626	f1_balb.idr|f1_c57bl6.idr	intron (NR_151731, intron 13 of 33)	intron (NR_151731, intron 13 of 33)	-74718.0	NM_022311	21646.0	Mm.486358	NM_022311	ENSMUSG00000038347	Tcte2	AI429268|Tcte-2	t-complex-associated testis expressed 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-115958568-4	chr13	115958453	115958653	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	351135.0	NM_021459	16392.0	Mm.42242	NM_021459	ENSMUSG00000042258	Isl1	-	ISL1 transcription factor, LIM/homeodomain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-55501491-2	chr12	55501391	55501591	+	588.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8844.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-91312909-3	chr12	91312818	91313018	+	880.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181815, intron 10 of 25)	RSINE1|SINE|B4	71491.0	NM_181815	75216.0	Mm.312204	NM_181815	ENSMUSG00000061533	Cep128	4930534B04Rik|5430424K18Rik|AI449708|AI480494|E230024F20	centrosomal protein 128	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-69996526-4	chr8	69996426	69996626	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145596)	promoter-TSS (NM_145596)	-142.0	NM_145596	234366.0	Mm.270044	NM_145596	ENSMUSG00000036180	Gatad2a	1110066C11Rik|BC031407|C80248	GATA zinc finger domain containing 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-19685684-2	chr10	19685584	19685784	+	668.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-26903.0	NM_172786	237313.0	Mm.234667	NM_172786	ENSMUSG00000020007	Il20ra	E230031K19	interleukin 20 receptor, alpha	protein-coding	-1.3681463318974	-1.33624156493372	-1.34650167276047	-0.80669348975676	-1.36769697821496	-1.33401815676661	-1.34417900924365	-1.3534210303531	-2.3580830592467	0.49586638340111	1
Merged-chr4-128719514-2	chr4	128719414	128719614	+	810.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_018774, intron 7 of 14)	intron (NM_018774, intron 7 of 14)	-8057.0	NM_001195083	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-66708739-4	chr15	66708621	66708821	+	967.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009375, intron 22 of 47)	MIRc|SINE|MIR	37951.0	NM_009375	21819.0	Mm.441333	NM_009375	ENSMUSG00000053469	Tg	Tgn|cog	thyroglobulin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-10968184-2	chr16	10968084	10968284	+	967.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019980, intron 1 of 3)	ID_B1|SINE|B4	24937.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80548941-4	chr10	80548838	80549038	+	725.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025852, intron 2 of 14)	intron (NM_025852, intron 2 of 14)	-9814.0	NM_026094	67331.0	Mm.52511	NM_026094	ENSMUSG00000003341	Atp8b3	1700042F02Rik|1700056N23Rik|ATPIK|SAPLT	ATPase, class I, type 8B, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114808204-2	chr11	114808104	114808304	+	632.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9280.0	NM_181749	217302.0	Mm.269127	NM_181749	ENSMUSG00000034677	Gpr142	PGR2	G protein-coupled receptor 142	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-3194798-4	chr11	3194684	3194884	+	948.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1321.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-67374131-4	chr7	67374012	67374212	+	924.3583369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1254.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84662886-4	chr8	84662763	84662963	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010499)	promoter-TSS (NM_010499)	-11.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	3.40148033544222	2.92325789645927	3.78564854936081	2.85803889784999	3.30574919272748	2.48625928547626	3.17102437494101	2.87290743642366	-0.507090021025656	0.423437247767088	0.900460846988572
Merged-chr1-191269702-4	chr1	191269615	191269815	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45261.0	NR_151547	100504360.0	Mm.16927	NM_001033188		D730003I15Rik	AU020850	RIKEN cDNA D730003I15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101548374-3	chr7	101548258	101548458	+	943.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	7444.0	NM_007490	11871.0	Mm.439746	NM_007490	ENSMUSG00000092517	Art2a-ps	ARTC2|Art2a|Ly92a|Rt-6|Rt6|Rt6-1	ADP-ribosyltransferase 2a, pseudogene	protein-coding	0.884370027875802	1.55760244550184	0.431825444478461	0.409411568547043	0.186929420392253	0.220245518737355	0.209635691568976	0.200410263229981	-4.57639868327653	0.0119309584139333	1
Merged-chr17-47754371-4	chr17	47754275	47754475	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161723, intron 1 of 8)	intron (NM_001161723, intron 1 of 8)	16444.0	NM_001161723	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	6.11070195766123	6.01882405332576	5.36487898439574	6.27136277525201	5.79473671266326	6.3057839428289	5.3690130501842	6.36999064197181	0.0340651091560729	0.903987827283128	0.998431161219273
Merged-chr10-128030943-2	chr10	128030843	128031043	+	679.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_008921)	TTS (NM_008921)	-4403.0	NM_013608	17938.0	Mm.3746	NM_013608	ENSMUSG00000061315	Naca	AL022831|AL024382|Gm1878|mKIAA0363|skNAC	nascent polypeptide-associated complex alpha polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117856387-4	chr10	117856271	117856471	+	982.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10397.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-90743864-4	chr16	90743753	90743953	+	982.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029844, intron 1 of 2)	intron (NM_029844, intron 1 of 2)	5529.0	NM_029844	77037.0	Mm.22455	NM_029844	ENSMUSG00000039956	Mrap	1110025G12Rik|C21ORF61|Falp|ORF61	melanocortin 2 receptor accessory protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94381204-4	chr10	94381103	94381303	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 1 of 4)	intron (NM_001359762, intron 1 of 4)	69254.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-112692904-2	chr12	112692804	112693004	+	598.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14064.0	NM_001100460	382639.0	Mm.11350	NM_001100460	ENSMUSG00000037638	Zbtb42	EG382639|Gm5188|simiRP58	zinc finger and BTB domain containing 42	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-36214522-3	chr12	36214426	36214626	+	905.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361098, intron 5 of 8)	intron (NM_001361098, intron 5 of 8)	3692.0	NM_027699	71156.0	Mm.250837	NM_027699	ENSMUSG00000020545	Lrrc72	1700108M19Rik|4933421E18Rik	leucine rich repeat containing 72	protein-coding	0.667345626616275	1.58640175366511	0.699764032031831	1.35106491648562	1.27966671166701	1.90960177034525	0.931198755543139	0.689891950139996	0.543364293623197	0.714136934760177	0.998431161219273
Merged-chr1-191833644-1	chr1	191833544	191833744	+	571.0	f1_c57bl6.idr	TTS (NM_010892)	TTS (NM_010892)	12171.0	NM_010892	18005.0	Mm.33773	NM_010892	ENSMUSG00000026622	Nek2	AA617254|C77054	NIMA (never in mitosis gene a)-related expressed kinase 2	protein-coding	0.541984099713845	0.282384153365548	0.408338568002371	0.792274261344665	0.0747015491884839	0.0921709016246836	0.0864851549868897	0.0816343178206649	-4.03628266051516	0.0449052250548836	1
Merged-chr10-128704683-1	chr10	128704583	128704783	+	1000.0	f0_balb.idr	intron (NM_183417, intron 1 of 7)	CpG	368.0	NM_183417	12566.0	Mm.111326	NM_016756	ENSMUSG00000025358	Cdk2	A630093N05Rik	cyclin-dependent kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-61263756-2	chr19	61263656	61263856	+	658.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR33|LTR|ERVK	-35338.0	NM_009970	12982.0	Mm.287228	NM_009970	ENSMUSG00000059326	Csf2ra	CD116|Csfgmra|GM-CSF-Ra|GM-CSFR	colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167950049-1	chr2	167949949	167950149	+	541.0	f1_balb.idr	intron (NM_011201, intron 1 of 8)	intron (NM_011201, intron 1 of 8)	17722.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-60225660-2	chr11	60225560	60225760	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3079.0	NM_001358315	20787.0	Mm.278701	NM_011480	ENSMUSG00000020538	Srebf1	ADD1|SREBP1|bHLHd1	sterol regulatory element binding transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16387827-4	chr7	16387702	16387902	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285892)	promoter-TSS (NM_001285892)	94.0	NM_001285892	56459.0	Mm.258530	NM_019748	ENSMUSG00000052833	Sae1	2400010M20Rik|2610044L12Rik|AL033372|AOS1|AW743391|D7Ertd177e|HSPC140|Sua1|Uble1a	SUMO1 activating enzyme subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-97017458-2	chr5	97017358	97017558	+	578.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_080708, intron 1 of 15)	intron (NM_080708, intron 1 of 15)	19769.0	NM_080708	140780.0	Mm.281490	NM_080708	ENSMUSG00000034663	Bmp2k	4933417M22Rik|AA673486|AV128808|BIKE	BMP2 inducible kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-9976428-4	chr8	9976322	9976522	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_176953)	promoter-TSS (NM_176953)	-99.0	NM_176953	319583.0	Mm.80584	NM_176953	ENSMUSG00000049717	Lig4	5830471N16Rik|tiny	ligase IV, DNA, ATP-dependent	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-139294722-2	chr7	139294622	139294822	+	738.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46240.0	NM_001098636	101631.0	Mm.334300	NM_001033206	ENSMUSG00000060260	Pwwp2b	AI594893|D7Ertd517e|D930023J19Rik|Pwwp2	PWWP domain containing 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-50916209-4	chr11	50916096	50916296	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178447)	promoter-TSS (NM_178447)	-20.0	NM_001294323	22678.0	Mm.259230	NM_009550	ENSMUSG00000049321	Zfp2	9930007F06Rik|Fnp-2|Zfp-2|mKR2|mkr-2|mszf87	zinc finger protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-106692381-2	chr13	106692281	106692481	+	783.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4|SINE|ID	244577.0	NM_001360897	76582.0	Mm.132208	NM_029665	ENSMUSG00000042590	Ipo11	1700081H05Rik|2510001A17Rik|AI314624|AW555235|E330021B14Rik|Ranbp11	importin 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-32441396-3	chr18	32441285	32441485	+	862.6333619999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63101.0	NR_045403	402767.0	Mm.385109	NR_045403	ENSMUSG00000097413	A830052D11Rik	-	RIKEN cDNA A830052D11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-122918736-3	chr3	122918636	122918836	+	802.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_046036, intron 2 of 5)	intron (NR_046036, intron 2 of 5)	5380.0	NR_046036	74057.0	Mm.159123	NR_046036	ENSMUSG00000097852	4933405D12Rik	-	RIKEN cDNA 4933405D12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28568428-4	chr7	28568321	28568521	+	907.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027470, intron 2 of 9)	intron (NM_027470, intron 2 of 9)	-7437.0	NR_106016	102466795.0		NR_106016	ENSMUSG00000098558	Mir7049	Gm27277|mmu-mir-7049	microRNA 7049	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-4234148-4	chr12	4234007	4234207	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001204912)	promoter-TSS (NM_001204912)	80.0	NM_001204912	69709.0	Mm.250552	NM_001204912	ENSMUSG00000096199	Ptrhd1	2410017P09Rik	peptidyl-tRNA hydrolase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-152686250-1	chr2	152686150	152686350	+	649.0	f1_c57bl6.idr	promoter-TSS (NM_025543)	promoter-TSS (NM_025543)	-898.0	NM_025543	66405.0	Mm.440291	NM_025543	ENSMUSG00000042814	Mcts2	2400002F11Rik|MCT-2	malignant T cell amplified sequence 2	protein-coding	2.52825237387514	2.56128482343087	2.66520634801883	2.89046526766408	1.42962687303782	1.30890183755338	1.27266955249842	2.60070654849644	-1.96664757482493	0.0459744051653114	0.309424596020983
Merged-chr6-122340594-4	chr6	122340479	122340679	+	947.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_073364)	promoter-TSS (NR_073364)	-352.0	NM_001271579	13619.0	Mm.6822	NM_007905	ENSMUSG00000040669	Phc1	AW557034|Edr|Edr1|Mph1|Rae-28|rae28	polyhomeotic 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-65060286-4	chr1	65060194	65060394	+	916.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3146.0	NM_007776	12967.0	Mm.425031	NM_007776	ENSMUSG00000067299	Crygd	Aey4|Cryg-1|DGcry-1|Lop12	crystallin, gamma D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-72563663-2	chr14	72563563	72563763	+	749.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_207636, intron 15 of 25)	intron (NM_207636, intron 15 of 25)	146340.0	NM_207636	319448.0	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-24538866-2	chr7	24538766	24538966	+	731.166626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_153134)	TTS (NM_153134)	7139.0	NM_001037143	641361.0	Mm.333661	NM_001037143	ENSMUSG00000011632	Pinlyp	2310033E01Rik	phospholipase A2 inhibitor and LY6/PLAUR domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-56141827-3	chr4	56141688	56141888	+	744.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	599637.0	NM_025271	11471.0	Mm.251434	NM_025271	ENSMUSG00000070980	Actl7b	Gm26657|Tact1	actin-like 7b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141541302-2	chr7	141541202	141541402	+	761.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1445.0	NM_001142681	68038.0	Mm.245355	NM_026522	ENSMUSG00000025512	Chid1	3110023E09Rik|AI841869	chitinase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-131479123-4	chr2	131479004	131479204	+	952.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC1|LINE|L1	-12758.0	NM_001177834	228608.0	Mm.136586	NM_145533	ENSMUSG00000027333	Smox	B130066H01Rik|PAO|PAOh1|SMO	spermine oxidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-79539116-4	chr10	79539037	79539237	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5350.0	NM_001302389	50784.0	Mm.28873	NM_015817	ENSMUSG00000052151	Plpp2	Lpp2|PAP2-G|PAP2-gamma|PAP2c|Ppap2c	phospholipid phosphatase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85349966-3	chr12	85349858	85350058	+	895.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026775, intron 3 of 4)	intron (NM_026775, intron 3 of 4)	-10596.0	NM_145138	217718.0	Mm.29071	NM_145138	ENSMUSG00000034290	Nek9	C130021H08Rik	NIMA (never in mitosis gene a)-related expressed kinase 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85462887-3	chr12	85462748	85462948	+	812.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11042.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-53782165-2	chr11	53782065	53782265	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11692.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-17787899-2	chr6	17787799	17787999	+	822.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_022332, intron 1 of 15)	L2b|LINE|L2	38729.0	NM_001083315	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-98531730-1	chr6	98531630	98531830	+	760.0	f0_balb.idr	Intergenic	Intergenic	-188976.0	NM_001128092	330390.0	Mm.484161	NM_001128092	ENSMUSG00000090667	Gm765	-	predicted gene 765	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-103100863-2	chr15	103100763	103100963	+	644.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45965.0	NR_045743	432989.0	Mm.383979	NR_045743	ENSMUSG00000097003	D930007P13Rik	-	Riken cDNA D930007P13 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-5837533-4	chr13	5837444	5837644	+	893.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F1|LTR|ERVL-MaLR	20548.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-55819025-3	chr16	55818905	55819105	+	723.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001159394, exon 3 of 12)	exon (NM_001159394, exon 3 of 12)	3133.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118811899-2	chr9	118811799	118811999	+	886.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 4 of 13)	LTR16C|LTR|ERVL	100207.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141646197-4	chr4	141646095	141646295	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347237, intron 1 of 18)	intron (NM_001347237, intron 1 of 18)	17920.0	NM_001347237	69582.0	Mm.33220	NM_001033150	ENSMUSG00000028917	Plekhm2	2310034J19Rik|AI854247|mKIAA0842	pleckstrin homology domain containing, family M (with RUN domain) member 2	protein-coding	5.42032597497746	5.19651792935272	5.47807158070276	5.02122219141398	4.02277966905241	4.98631984449818	5.14892238008048	4.559204884132	-0.666336174825292	0.0532493578888408	0.337758904331179
Merged-chr3-132744877-4	chr3	132744756	132744956	+	992.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163455, intron 20 of 25)	intron (NM_001163455, intron 20 of 25)	60712.0	NM_001163455	271981.0	Mm.257864	NM_173032	ENSMUSG00000028030	Tbck	1700120J03Rik|9430001M19|A630047E20Rik|C030007I09Rik|Tbckl	TBC1 domain containing kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-63124421-4	chr14	63124316	63124516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007798, intron 1 of 9)	intron (NM_007798, intron 1 of 9)	1954.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-82208933-2	chr4	82208833	82209033	+	814.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR30E_MM|LTR|ERV1	-143043.0	NR_151604	102635575.0	Mm.403314	NR_151604	ENSMUSG00000087110	Gm11264	-	predicted gene 11264	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-89295391-2	chr6	89295291	89295491	+	638.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9666.0	NR_131021	75131.0	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	Gm44205	RIKEN cDNA 4930512J16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-80729964-2	chr17	80729864	80730064	+	590.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1939.0	NM_001290345	225028.0	Mm.311948	NM_001081357	ENSMUSG00000024242	Map4k3	4833416M01Rik|4833416M07Rik|9530052P13Rik|Glk|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1	mitogen-activated protein kinase kinase kinase kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34628649-2	chr17	34628549	34628749	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302394)	promoter-TSS (NM_001302394)	-370.0	NM_001302393	54397.0	Mm.373627	NM_019441	ENSMUSG00000015474	Ppt2	0610007M19Rik|AA672937	palmitoyl-protein thioesterase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-128411100-4	chr7	128410930	128411130	+	960.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026418, intron 1 of 4)	intron (NM_026418, intron 1 of 4)	7142.0	NM_026418	67865.0	Mm.18635	NM_026418	ENSMUSG00000030844	Rgs10	2310010N19Rik	regulator of G-protein signalling 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-182413011-3	chr1	182412886	182413086	+	642.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173378, intron 1 of 17)	intron (NM_173378, intron 1 of 17)	3819.0	NM_173378	209456.0	Mm.287450	NM_173378	ENSMUSG00000026510	Trp53bp2	53BP2|AI746547|ASPP2|PPP1R13A|Tp53bp2|X98550	transformation related protein 53 binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-86609367-2	chr6	86609267	86609467	+	739.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18807.0	NM_026414	67855.0	Mm.183043	NM_026414	ENSMUSG00000033508	Asprv1	2300003P22Rik|AA986851|SASP|SASPase|Taps	aspartic peptidase, retroviral-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75053186-4	chr11	75053084	75053284	+	955.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001002764, intron 12 of 18)	intron (NM_001002764, intron 12 of 18)	12807.0	NR_030454	735274.0		NR_030454	ENSMUSG00000106252	Mir684-1	Mirn684-1	microRNA 684-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-49497131-3	chr7	49497015	49497215	+	848.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175272, intron 11 of 37)	intron (NM_175272, intron 11 of 37)	139720.0	NM_001005232	13172.0	Mm.307176	NM_001005232	ENSMUSG00000030507	Dbx1	AI426026|Dbx	developing brain homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44502332-2	chr9	44502232	44502432	+	777.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357490, intron 3 of 7)	intron (NM_001357490, intron 3 of 7)	3196.0	NM_030256	80288.0	Mm.370270	NM_030256	ENSMUSG00000063382	Bcl9l	B9L|BC003321|BCL9-2|DLNB11	B cell CLL/lymphoma 9-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-36272633-6	chr2	36272520	36272720	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42194.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-88278302-6	chr1	88278194	88278394	+	983.2777710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198652)	promoter-TSS (NM_198652)	-715.0	NM_198652	381280.0	Mm.384762	NM_198652	ENSMUSG00000044783	Hjurp	6430706D22Rik|A730008H23Rik|C330011F01Rik|Gm975|Mfleg1	Holliday junction recognition protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-11280178-9	chr2	11280057	11280257	+	944.552917	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008859, intron 14 of 17)	intron (NM_008859, intron 14 of 17)	-59332.0	NR_040369	100503147.0	Mm.91961	NR_040369	ENSMUSG00000086006	Gm13293	-	predicted gene 13293	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-13990947-2	chr10	13990847	13991047	+	609.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358782, intron 1 of 9)	MLT1C|LTR|ERVL-MaLR	24568.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-67724322-4	chr13	67724232	67724432	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145622, intron 1 of 3)	intron (NM_145622, intron 1 of 3)	4841.0	NM_145622	235907.0	Mm.440123	NM_145622	ENSMUSG00000071281	Zfp65	KRAB5|Zfp71-rs1|pz114	zinc finger protein 65	protein-coding	4.53829304240356	5.38685456880267	4.09355533914009	5.42932277352333	5.03138483584297	4.64783362593209	4.5551053635428	4.25589240764277	-0.384898869718395	0.336983393359424	0.83703930093451
Merged-chr11-53470063-3	chr11	53469965	53470165	+	909.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10130.0	NM_183173	237761.0	Mm.145208	NM_183173	ENSMUSG00000044352	Sowaha	A830006N08Rik|Ankrd43	sosondowah ankyrin repeat domain family member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-23717157-2	chr13	23717057	23717257	+	652.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR50B|LTR|ERVK	-6303.0	NM_010424	15216.0	Mm.2681	NM_010424	ENSMUSG00000006611	Hfe	MR2	hemochromatosis	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-129584643-2	chr5	129584543	129584743	+	712.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011846, intron 1 of 9)	CpG	474.0	NM_011846	23948.0	Mm.42047	NM_011846	ENSMUSG00000029436	Mmp17	MT4-MMP|MT4MMP|MTMMP4	matrix metallopeptidase 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83142358-3	chr6	83142183	83142383	+	813.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001355524, exon 1 of 12)	5' UTR (NM_001355524, exon 1 of 12)	177.0	NM_001355525	20166.0	Mm.4139	NM_009106	ENSMUSG00000034930	Rtkn	-	rhotekin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-78346430-2	chr11	78346330	78346530	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001313987)	promoter-TSS (NM_001313987)	-280.0	NM_001313986	22248.0	Mm.284811	NM_011676	ENSMUSG00000002058	Unc119	D11Bhm52|HRG4|MRG4|Rg4|Rtg4|Unc119h	unc-119 lipid binding chaperone	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-60368613-2	chr10	60368513	60368713	+	570.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001159572, exon 6 of 7)	exon (NM_001159572, exon 6 of 7)	21762.0	NM_028732	74048.0	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-57589454-4	chr8	57589344	57589544	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167981, intron 1 of 11)	intron (NM_001167981, intron 1 of 11)	-62309.0	NR_040698	100502619.0	Mm.393851	NR_040698		AW046200	-	expressed sequence AW046200	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-3558594-4	chr17	3558493	3558693	+	890.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146074)	promoter-TSS (NM_146074)	769.0	NR_045302	68230.0	Mm.431352	NR_045302		1700102H20Rik	-	RIKEN cDNA 1700102H20 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26069511-4	chr17	26069395	26069595	+	895.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162868)	promoter-TSS (NM_001162868)	-318.0	NM_001162869	215445.0	Mm.41191	NM_153140	ENSMUSG00000037098	Rab11fip3	Cart1|D030060O14Rik|Rab11-FIP3|mKIAA0665	RAB11 family interacting protein 3 (class II)	protein-coding	3.23859431302406	4.22227850837365	2.69360184394336	2.09436531154546	3.7819536449851	2.95868551260464	3.61170109514513	2.62566142067347	0.040640067116199	0.953845252675094	0.998431161219273
Merged-chr13-23531731-4	chr13	23531626	23531826	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_153173)	TTS (NM_153173)	682.0	NM_153173	69386.0	Mm.158272	NM_153173	ENSMUSG00000060981	Hist1h4h	1700024H08Rik	histone cluster 1, H4h	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-130525664-4	chr2	130525560	130525760	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355161, intron 7 of 21)	intron (NM_001355161, intron 7 of 21)	38089.0	NR_040348	321014.0	Mm.442588	NR_040348	ENSMUSG00000060029	4930473A02Rik	-	RIKEN cDNA 4930473A02 gene	ncRNA	3.10273053166222	3.18299768407985	3.077584692808	2.52278240797403	2.51770834169039	2.5778239355229	2.34840411057265	1.46504032624751	-1.39251226172611	0.0735776775531091	0.410089025371107
Merged-chr19-3837505-1	chr19	3837405	3837605	+	821.0	f1_balb.idr	Intergenic	Intergenic	-14268.0	NM_001271496	12660.0	Mm.225505	NM_013490	ENSMUSG00000024843	Chka	CK|CK/EK-alpha|Chetk-alpha|Chk|ChoK|EK|EtnK-alpha	choline kinase alpha	protein-coding	0.42664390942458	1.51790563601133	0.845970543799867	0.442186462661354	0.428982385062029	0.896518244396198	0.453953440102772	1.39580625121631	-0.153416977636357	0.929696942180134	0.998431161219273
Merged-chr5-127616293-3	chr5	127616196	127616396	+	938.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133895, intron 1 of 7)	intron (NM_133895, intron 1 of 7)	1096.0	NM_133895	100561.0	Mm.28506	NM_133895	ENSMUSG00000029416	Slc15a4	AA987064|AW742963|C130069N12Rik|PHT1|PTR4	solute carrier family 15, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-104118072-4	chr8	104117972	104118172	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009868, intron 2 of 11)	ORR1E|LTR|ERVL-MaLR	-12199.0	NR_131138	546096.0	Mm.252264	NR_131138	ENSMUSG00000110053	Gm29682	Gm45664	predicted gene, 29682	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-76367389-4	chr2	76367292	76367492	+	966.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2592.0	NM_153405	241490.0	Mm.33310	NM_153405	ENSMUSG00000042369	Rbm45	Drb1|Drbp1|G430095G15Rik	RNA binding motif protein 45	protein-coding	0.0786420977301286	0.54466384326592	0.658686241618756	0.0914585232062939	0.0805701626526474	1.37931846395224	0.101162579867569	0.0927880002204952	0.996755917684136	0.623502936271534	1
Merged-chr9-27000195-4	chr9	27000077	27000277	+	927.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025862)	promoter-TSS (NM_025862)	500.0	NM_001326361	77862.0	Mm.16925	NM_144543	ENSMUSG00000035443	Thyn1	D730042P09Rik|HSPC144|MDS012|MY105|Thy28	thymocyte nuclear protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-24471696-2	chr18	24471596	24471796	+	608.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026529, intron 2 of 4)	intron (NM_026529, intron 2 of 4)	825.0	NM_026529	68046.0	Mm.276574	NM_026529	ENSMUSG00000024273	2700062C07Rik	AI195775|C87515	RIKEN cDNA 2700062C07 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71541641-2	chr8	71541499	71541699	+	797.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-1331.0	NM_028617	73711.0	Mm.307770	NM_028617	ENSMUSG00000031813	Mvb12a	1110012M11Rik|Fam125a	multivesicular body subunit 12A	protein-coding	1.06454514451765	0.389147827198043	0.380271675210464	0.709107149927342	1.36526119882678	0.391137071558721	0.382236736543515	0.71431783642444	0.59157132089146	0.744030065901265	1
Merged-chr18-23888080-4	chr18	23887987	23888187	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162941, intron 7 of 7)	intron (NM_001162941, intron 7 of 7)	-66601.0	NM_027007	69256.0	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-128630234-3	chr6	128630144	128630344	+	891.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7310.0	NM_010737	17057.0	Mm.16729	NM_010737	ENSMUSG00000030361	Klrb1a	Ly55a|NKR-P1.7|NKR-P1A|NKRP12|Nkrp1-a|Nkrp1a|ly-55A	killer cell lectin-like receptor subfamily B member 1A	protein-coding	1.55564744920968	1.72805787439928	1.23579143924537	2.16382293372896	2.06867567807417	2.07098637512214	2.34988827771798	2.60351240254359	1.53062166295208	0.119005395895521	0.541133408551742
Merged-chr2-22941552-2	chr2	22941452	22941652	+	740.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001331044, exon 10 of 10)	3' UTR (NM_001331044, exon 10 of 10)	46030.0	NM_001355467	56075.0	Mm.249752	NM_019501	ENSMUSG00000026784	Pdss1	2610203G20Rik|2700031G06Rik|TPT|TPT 1|Tprt|mDLP1|mSPS1	prenyl (solanesyl) diphosphate synthase, subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123172099-1	chr5	123171999	123172199	+	566.0	f1_c57bl6.idr	intron (NM_008277, intron 13 of 13)	intron (NM_008277, intron 13 of 13)	10624.0	NM_008277	15445.0	Mm.439709	NM_008277	ENSMUSG00000029445	Hpd	4HPPD|Fla|Flp|Hppd|Laf	4-hydroxyphenylpyruvic acid dioxygenase	protein-coding	0.177885352672228	-0.449518208382885	-0.453494425896435	0.0764871658780074	-0.460887695968601	-0.448621412489134	-0.452617753464583	-0.456024370238125	-3.53159461346186	0.188195973438757	1
Merged-chr4-3420272-1	chr4	3420172	3420372	+	554.0	f1_c57bl6.idr	Intergenic	Intergenic	-116818.0	NR_037306	100499523.0		NR_037306	ENSMUSG00000094253	Mir3471-2	mmu-mir-3471-2	microRNA 3471-2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123345373-2	chr5	123345273	123345473	+	671.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029850, intron 1 of 5)	CpG	925.0	NM_029850	77045.0	Mm.151960	NM_029850	ENSMUSG00000029438	Bcl7a	4432415N06Rik|AI448316	B cell CLL/lymphoma 7A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-21161782-2	chr13	21161685	21161885	+	672.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18146.0	NM_009054	19720.0	Mm.314056	NM_009054	ENSMUSG00000021326	Trim27	AW538890|Gm19403|Rfp	tripartite motif-containing 27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85629777-2	chr12	85629677	85629877	+	547.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205053, intron 2 of 3)	intron (NM_001205053, intron 2 of 3)	29759.0	NM_001205053	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89164343-2	chr3	89164243	89164443	+	713.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007712)	promoter-TSS (NM_007712)	-452.0	NM_001310016	105943584.0		NM_001310016		Gm45927	Clk2-scamp3|TU52	predicted gene, 45927	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-11454527-3	chr4	11454422	11454622	+	880.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31436.0	NM_001081183	66185.0	Mm.331487	NM_001081183	ENSMUSG00000040720	Virma	1110037F02Rik|4930422M05Rik|Kiaa1429|mKIAA1429	vir like m6A methyltransferase associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-36036250-2	chr12	36036150	36036350	+	693.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025359, intron 1 of 5)	L2|LINE|L2	6228.0	NM_025359	66109.0	Mm.254663	NM_025359	ENSMUSG00000020577	Tspan13	1100001I23Rik|NET-6|Tm4sf13	tetraspanin 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70468816-4	chr11	70468727	70468927	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8843.0	NM_023158	66102.0	Mm.425692	NM_023158	ENSMUSG00000018920	Cxcl16	0910001K24Rik|AV290116|BB024863|CXCL16v1|CXCL16v2|SR-PSOX|Zmynd15|b2b498Clo	chemokine (C-X-C motif) ligand 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33560463-4	chr16	33560368	33560568	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083902, intron 4 of 11)	intron (NM_001083902, intron 4 of 11)	41873.0	NM_001083902	171286.0	Mm.35253	NM_134251	ENSMUSG00000035506	Slc12a8	CCC9|E330020C02Rik	solute carrier family 12 (potassium/chloride transporters), member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-102572836-1	chr4	102572736	102572936	+	1000.0	f1_balb.idr	intron (NM_019840, intron 6 of 14)	intron (NM_019840, intron 6 of 14)	2776.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	2.22470243115741	3.0286569878989	3.35016561594494	2.35199114239948	2.08962292238566	2.9406112535943	2.84099249118553	3.73265228442427	0.383376081302477	0.607574483550027	0.974576632476413
Merged-chr13-102898945-2	chr13	102898845	102899045	+	680.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175171, intron 4 of 28)	intron (NM_175171, intron 4 of 28)	138690.0	NR_130171	76624.0	Mm.426384	NR_130171	ENSMUSG00000091906	1700099I09Rik	-	RIKEN cDNA 1700099I09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-10393626-2	chr17	10393526	10393726	+	576.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	-62590.0	NR_077239	319750.0	Mm.383485	NR_077237	ENSMUSG00000089633	A230009B12Rik	-	RIKEN cDNA A230009B12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-57745648-3	chr6	57745539	57745739	+	830.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43184.0	NM_133737	71835.0	Mm.274904	NM_133737	ENSMUSG00000062190	Lancl2	1700003F10Rik	LanC (bacterial lantibiotic synthetase component C)-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-45552995-2	chr17	45552895	45553095	+	712.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur2|LINE|L1	-2705.0	NM_008690	18037.0	Mm.57043	NM_008690	ENSMUSG00000023947	Nfkbie	I-kappa-B-epsilon|IKBE|IkB-E|NF-kappa-BIE|ikB-epsilon	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, epsilon	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-104369226-3	chr7	104369139	104369339	+	869.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	-10593.0	NM_175648	244183.0	Mm.347647	NM_175648	ENSMUSG00000052749	Trim30b	A530023O14Rik|Trim30-1	tripartite motif-containing 30B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69696007-4	chr11	69695918	69696118	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001034097)	promoter-TSS (NM_001034097)	80.0	NM_011614	21944.0	Mm.8983	NM_011614	ENSMUSG00000097328	Tnfsf12	Apo3l|Dr3l|Dr3lg|Tweak	tumor necrosis factor (ligand) superfamily, member 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-85574221-3	chr17	85574121	85574321	+	977.361084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44175.0	NR_038084	100043902.0	Mm.150838	NR_015385	ENSMUSG00000093460	Six3os1	D17Mgi26|E130112H22Rik|Rncr1|Six3os	SIX homeobox 3, opposite strand 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-46043165-3	chr13	46043098	46043298	+	957.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	UCON26|Unknown|Unknown	-78207.0	NM_009124	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-122945035-3	chr6	122944936	122945136	+	875.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	-7479.0	NM_001204241	73149.0	Mm.25684	NM_153197	ENSMUSG00000043832	Clec4a3	3110037K17Rik|Dcir3	C-type lectin domain family 4, member a3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80752329-4	chr10	80752265	80752465	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2838.0	NM_199322	208266.0	Mm.152371	NM_199322	ENSMUSG00000061589	Dot1l	A630076O07|AW907654|Dot1|KMT4|mDot1	DOT1-like, histone H3 methyltransferase (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167717891-3	chr2	167717809	167718009	+	841.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26732.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-79781046-2	chr17	79780946	79781146	+	544.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66005.0	NM_009994	13078.0	Mm.214016	NM_009994	ENSMUSG00000024087	Cyp1b1	CP1B|P4501b1	cytochrome P450, family 1, subfamily b, polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167761823-4	chr2	167761728	167761928	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Charlie8|DNA|hAT-Charlie	70651.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-117747576-3	chr12	117747500	117747700	+	734.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175930, intron 25 of 27)	(TTC)n|Simple_repeat|Simple_repeat	-96261.0	NM_146040	217946.0	Mm.281149	NM_146040	ENSMUSG00000021175	Cdca7l	BC006933|JPO2	cell division cycle associated 7 like	protein-coding	1.64328964713888	2.82417200428779	2.23199087924227	1.89389879822269	1.81378040091401	2.84523957467525	2.11556711568704	1.90347572919505	0.0235975705685797	0.979385047370061	0.998431161219273
Merged-chr13-21771641-1	chr13	21771541	21771741	+	662.25	f0_c57.idr	Intergenic	RLTR45|LTR|ERVK	8984.0	NM_020034	56702.0	Mm.221314	NM_020034	ENSMUSG00000058773	Hist1h1b	H1.5|H1B|H1f5|H1s-3	histone cluster 1, H1b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-95850411-6	chr4	95850286	95850486	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113412, intron 14 of 15)	intron (NM_001113412, intron 14 of 15)	116649.0	NR_045777	319247.0	Mm.473527	NM_175680	ENSMUSG00000044125	9530080O11Rik	-	RIKEN cDNA 9530080O11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-103218494-3	chr11	103218367	103218567	+	705.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177801)	promoter-TSS (NM_177801)	-35.0	NM_177801	328019.0	Mm.189646	NM_177801	ENSMUSG00000044787	Spata32	4933400C05Rik|VAD1.2	spermatogenesis associated 32	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-24698085-3	chr1	24698013	24698213	+	933.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026719, intron 3 of 15)	L1M4|LINE|L1	19195.0	NM_001310483	68421.0	Mm.336563	NM_026719	ENSMUSG00000073725	Lmbrd1	0910001K20Rik|AV347960	LMBR1 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-152154753-1	chr4	152154653	152154853	+	543.0	f1_c57bl6.idr	Intergenic	(TTTTTG)n|Simple_repeat|Simple_repeat	-2546.0	NM_207687	56226.0	Mm.264215	NM_019585	ENSMUSG00000028943	Espn	je	espin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-25854261-4	chr14	25854154	25854354	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013469, intron 1 of 14)	intron (NM_013469, intron 1 of 14)	12099.0	NM_013469	11744.0	Mm.294083	NM_013469	ENSMUSG00000021866	Anxa11	A830099O17Rik|Anx11	annexin A11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-24593881-4	chr7	24593782	24593982	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_023154, exon 2 of 8)	5' UTR (NM_023154, exon 2 of 8)	-6241.0	NM_001033205	101544.0	Mm.20117	NM_001033205	ENSMUSG00000066721	Zfp575	AI326876|Znf575	zinc finger protein 575	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81860100-4	chr15	81859975	81860175	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1749.0	NM_020507	57259.0	Mm.323595	NM_020507	ENSMUSG00000048546	Tob2	2900090N22Rik|4930545K18Rik|AV071822|mKIAA1663	transducer of ERBB2, 2	protein-coding	7.32902931259638	6.74221158451978	7.23678543091739	7.41148490065047	7.43865478588174	6.97292083567508	7.0797370161131	7.39272980171904	0.0340612009901154	0.853194074535865	0.998431161219273
Merged-chr2-178768331-2	chr2	178768231	178768431	+	585.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	337816.0	NM_198656	381409.0	Mm.330860	NM_198656	ENSMUSG00000039155	Cdh26	Gm1010	cadherin-like 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-23313831-2	chr16	23313731	23313931	+	642.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252506, intron 1 of 6)	MIRc|SINE|MIR	23361.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-93817087-3	chr16	93816991	93817191	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-15030.0	NM_001045529	338467.0	Mm.287329	NM_001045529	ENSMUSG00000039456	Morc3	1110051N18Rik|AI452146|BF318192|D16Jhu32e|NXP2|Zcwcc3	microrchidia 3	protein-coding	2.98011047004629	3.1612554110777	2.09669901683996	3.21702884276976	3.59640279745488	1.95008948014961	3.3334319687601	2.78261527208172	0.229333584850422	0.754502183592931	0.998431161219273
Merged-chr14-65558051-2	chr14	65557951	65558151	+	637.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028811, intron 10 of 14)	intron (NM_028811, intron 10 of 14)	35061.0	NM_001253812	74195.0	Mm.29719	NM_028811	ENSMUSG00000022031	Elp3	2610507P14Rik|KAT9	elongator acetyltransferase complex subunit 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91279471-2	chr2	91279371	91279571	+	577.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175123, intron 7 of 8)	intron (NM_175123, intron 7 of 8)	14356.0	NM_023854	77038.0	Mm.43636	NM_023854	ENSMUSG00000027255	Arfgap2	2310032E02Rik|Zfp289	ADP-ribosylation factor GTPase activating protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-83832320-4	chr18	83832225	83832425	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	254237.0	NM_001081300	110796.0	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-29156698-2	chr7	29156598	29156798	+	661.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146023)	promoter-TSS (NM_001146023)	-488.0	NM_001146023	73833.0	Mm.260890	NM_028661	ENSMUSG00000030590	Fam98c	1110006G06Rik|AI836081|AV026483|B230110F21Rik	family with sequence similarity 98, member C	protein-coding	2.41942890334428	2.27268811080401	2.19375214925424	2.02101938634928	1.93281002917051	1.24271874482556	2.09721581988672	1.19419350637354	-1.48034823430197	0.154819391185515	0.610090778008695
Merged-chr10-80051963-9	chr10	80051860	80052060	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110342, intron 2 of 6)	intron (NR_110342, intron 2 of 6)	-1528.0	NM_008162	625249.0	Mm.332810	NM_008162	ENSMUSG00000075706	Gpx4	GPx-4|GSHPx-4|PHGPx|mtPHGPx|snGPx	glutathione peroxidase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27326020-2	chr2	27325920	27326120	+	699.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_133905, intron 2 of 29)	intron (NR_133905, intron 2 of 29)	-78717.0	NM_138665	192166.0	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-95951245-4	chr13	95951150	95951350	+	963.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59328.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-125107516-4	chr5	125107400	125107600	+	895.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011424, intron 5 of 46)	intron (NM_011424, intron 5 of 46)	71714.0	NM_001253905	20602.0	Mm.278646	NM_011424	ENSMUSG00000029478	Ncor2	N-CoR|SMRT|SMRTe	nuclear receptor co-repressor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91929505-4	chr2	91929290	91929490	+	815.8809809999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001291483)	TTS (NM_001291483)	2312.0	NM_001291481	17242.0	Mm.906	NM_010784	ENSMUSG00000027239	Mdk	MK|Mek	midkine	protein-coding	0.121453553584619	0.330799425918582	0.796831750534193	0.550548871553469	0.599986349631093	0.14066111008722	0.134774605217779	0.129751471263382	-1.43460082334018	0.482350182871441	1
Merged-chr15-36933807-4	chr15	36933664	36933864	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	73638.0	NM_026521	68036.0	Mm.371631	NM_026521	ENSMUSG00000062397	Zfp706	3110006P09Rik|AA793007|AW536850|C77232|Znf706	zinc finger protein 706	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-99309171-3	chr5	99309100	99309300	+	909.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-56273.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	2.74859090983098	2.16732900534574	2.6225506523279	2.01527424906704	3.20355158706894	3.66975468996837	3.02492639219343	4.43045207838497	2.14148480741466	0.00167727839528003	0.0294497358827851
Merged-chr19-3832108-1	chr19	3832008	3832208	+	804.0	f1_c57bl6.idr	Intergenic	Intergenic	-19665.0	NM_001271496	12660.0	Mm.225505	NM_013490	ENSMUSG00000024843	Chka	CK|CK/EK-alpha|Chetk-alpha|Chk|ChoK|EK|EtnK-alpha	choline kinase alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-90334303-3	chr16	90334206	90334406	+	825.472229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49803.0	NM_178923	224432.0	Mm.439811	NM_178923	ENSMUSG00000022983	Scaf4	AA517739|Sfrs15|Sra4|Srsf15	SR-related CTD-associated factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127265960-2	chr10	127265860	127266060	+	837.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001190454)	promoter-TSS (NM_001190454)	-302.0	NM_027151	69654.0	Mm.167537	NM_027151	ENSMUSG00000025410	Dctn2	2310042E05Rik|C130077D06Rik|C87049|DCTN-50|GMP23-48K|RBP50|p50	dynactin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-23791095-1	chr17	23790995	23791195	+	546.0	f1_balb.idr	Intergenic	MER70B|LTR|ERVL	-4879.0	NM_001357140	76917.0	Mm.269613	NM_029798	ENSMUSG00000023911	Flywch2	2810417J12Rik|3010014L17Rik|AW548203	FLYWCH family member 2	protein-coding	-0.0977810112546613	-0.640100280118097	-0.643489345463267	-0.646098977299263	-0.64977895376042	-0.639335316722349	-0.1839472796963	-0.645643407029608	-0.324071321984594	0.911381361791499	1
Merged-chr17-71310953-4	chr17	71310853	71311053	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145158)	promoter-TSS (NM_145158)	58.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-30946833-2	chr14	30946733	30946933	+	718.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3544.0	NM_001306078	16424.0	Mm.3227	NM_008406	ENSMUSG00000006529	Itih1	ITI-HC1|Intin1|Itih-1	inter-alpha trypsin inhibitor, heavy chain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-49158686-4	chr7	49158572	49158772	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_154465, intron 3 of 3)	MER112|DNA|hAT-Charlie	3486.0	NR_154465	108167511.0	Mm.400599	NR_154465		9130015G15Rik	-	RIKEN cDNA 9130015G15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-108854093-4	chr9	108854014	108854214	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134420)	promoter-TSS (NM_134420)	71.0	NM_134420	171429.0	Mm.45201	NM_134420	ENSMUSG00000023259	Slc26a6	B930010B04Rik|CFEX|Pat-1|Pat1	solute carrier family 26, member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-118407031-4	chr10	118406930	118407130	+	969.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34016.0	NM_008337	15978.0	Mm.240327	NM_008337	ENSMUSG00000055170	Ifng	IFN-g|Ifg	interferon gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-91534701-4	chr12	91534613	91534813	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011648, intron 9 of 9)	intron (NM_011648, intron 9 of 9)	54936.0	NM_031391	83602.0	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-146168002-2	chr4	146167902	146168102	+	756.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177545, intron 2 of 4)	IAPLTR4|LTR|ERVK	10312.0	NM_001177545	667666.0	Mm.459230	NM_001177545	ENSMUSG00000066007	Zfp600	Gm13164	zinc finger protein 600	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166636494-2	chr2	166636394	166636594	+	574.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 4 of 39)	intron (NM_177782, intron 4 of 39)	71972.0	NR_152154	433503.0	Mm.491336	NR_152154		Gm29679	-	predicted gene, 29679	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-34193032-4	chr7	34192938	34193138	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001360710, exon 4 of 6)	exon (NM_001360710, exon 4 of 6)	3632.0	NM_026549	68079.0	Mm.38173	NM_026549	ENSMUSG00000002635	Pdcd2l	6030457N17Rik	programmed cell death 2-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-172335343-3	chr1	172335231	172335431	+	967.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5879.0	NM_001039484	16513.0	Mm.254563	NM_020269	ENSMUSG00000044708	Kcnj10	BIR10|BIRK-1|Kir1.2|Kir4.1	potassium inwardly-rectifying channel, subfamily J, member 10	protein-coding	0.381149378198284	0.131206182510401	0.125200804895882	0.120562568787946	0.387909118058551	0.634774492233409	0.126525922157648	0.849361795139368	2.59312353681141	0.207441102358498	1
Merged-chr14-121409175-3	chr14	121409072	121409272	+	776.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29942.0	NM_145465	223255.0	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	1.9381179024814	2.30026805835065	1.11123620684363	1.32241971474798	2.21895296756282	2.31855737204098	2.01521643981667	1.09455439614188	0.610204998689422	0.594079309323061	0.9706660979479
Merged-chr3-95671441-2	chr3	95671341	95671541	+	682.700012	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12720.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-151661772-4	chr1	151661669	151661869	+	907.633301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022018, intron 5 of 13)	intron (NM_022018, intron 5 of 13)	90396.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4298977-2	chr19	4298877	4299077	+	758.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290818, intron 1 of 20)	intron (NM_001290818, intron 1 of 20)	7245.0	NM_130863	110355.0	Mm.254144	NM_130863	ENSMUSG00000024858	Grk2	Adrbk-1|Adrbk1|Bark-1|beta ARK|betaARK1	G protein-coupled receptor kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-24050081-1	chr18	24049981	24050181	+	641.333313	f0_balb.idr	Intergenic	B3|SINE|B2	-29268.0	NM_021559	59057.0	Mm.417427	NM_021559	ENSMUSG00000051469	Zfp24	3526401F17Rik|5033419P20Rik|AI480505|AI642085|AL024422|KOX17|ZF-12|Zfp191|Znf24	zinc finger protein 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-16525646-4	chr16	16525548	16525748	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301817, intron 1 of 16)	intron (NM_001301817, intron 1 of 16)	1763.0	NM_001301818	224014.0	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105856106-3	chr8	105856152	105856352	+	972.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_021513, exon 1 of 1)	exon (NM_021513, exon 1 of 1)	1149.0	NM_021513	59016.0	Mm.286598	NM_021513	ENSMUSG00000036442	Thap11	2810036E22Rik|AB041579|CTG-B43a|CTG-B45d|Ronin	THAP domain containing 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80672452-3	chr10	80672386	80672586	+	848.7000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021462, intron 2 of 13)	intron (NM_021462, intron 2 of 13)	3807.0	NM_021462	17347.0	Mm.42126	NM_021462	ENSMUSG00000020190	Mknk2	2010016G11Rik|Gprk7|Mnk2	MAP kinase-interacting serine/threonine kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-8115974-4	chr14	8115863	8116063	+	926.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360314, intron 1 of 19)	intron (NM_001360314, intron 1 of 19)	17752.0	NM_001360315	218699.0	Mm.29515	NM_145458	ENSMUSG00000033885	Pxk	C230080L11Rik|D14Ertd813e|Monaka|Slob	PX domain containing serine/threonine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84222695-4	chr8	84222613	84222813	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172503, intron 10 of 13)	intron (NM_172503, intron 10 of 13)	-13806.0	NR_037294	100526528.0		NR_037294	ENSMUSG00000105458	Mir3074-2	mir-3074-2|mmu-mir-3074-2	microRNA 3074-2	ncRNA	4.32315735837492	3.59359546465769	4.40935611511578	4.54495484937629	5.16239114125544	4.98571409075893	5.26815851924991	5.56706355435212	1.20903733934093	0.000699053930927057	0.0146459529626243
Merged-chr10-81167881-4	chr10	81167788	81167988	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021501)	promoter-TSS (NM_021501)	-168.0	NM_021501	59004.0	Mm.34428	NM_021501	ENSMUSG00000004934	Pias4	PIASY|Pias-gamma|Piasg	protein inhibitor of activated STAT 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171102675-10	chr1	171102570	171102770	+	976.116699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-18991.0	NM_001081275	75472.0	Mm.32760	NM_029301	ENSMUSG00000026649	Cfap126	1700009P17Rik|AV282292|Flattop|Fltp	cilia and flagella associated protein 126	protein-coding	4.14942932499616	3.24149942625367	4.18709603217622	2.77598660884058	3.69797021006167	4.18284864021143	3.55848731906789	3.44851183730682	0.0292644501230228	0.957725383572473	0.998431161219273
Merged-chr2-181365415-4	chr2	181365323	181365523	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001165991)	promoter-TSS (NM_001165991)	0.0	NM_001048148	229007.0	Mm.87720	NM_144894	ENSMUSG00000027582	Zgpat	1500006I01Rik|BC021513	zinc finger, CCCH-type with G patch domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-136896722-7	chr4	136896623	136896823	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007572, exon 3 of 3)	exon (NM_007572, exon 3 of 3)	2121.0	NM_007572	12259.0	Mm.439957	NM_007572	ENSMUSG00000036887	C1qa	AI255395|C1q	complement component 1, q subcomponent, alpha polypeptide	protein-coding	2.6495390688574	3.98659287314595	1.74590196982141	2.80460628429132	2.32276701676711	1.52115654609857	3.43126697332709	3.39245827601176	-0.268147046883322	0.755419253646323	0.998431161219273
Merged-chr7-30935627-2	chr7	30935527	30935727	+	736.299988	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	8402.0	NM_032541	84506.0	Mm.439939	NM_032541	ENSMUSG00000050440	Hamp	Hamp1|Hepc|Hepc1	hepcidin antimicrobial peptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-9828749-4	chr3	9828654	9828854	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195031, intron 1 of 8)	intron (NM_001195031, intron 1 of 8)	4925.0	NM_053182	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-49321636-3	chr13	49321531	49321731	+	877.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12423.0	NM_015759	30938.0	Mm.291089	NM_015759	ENSMUSG00000037946	Fgd3	5830461L01Rik|ZFYVE5	FYVE, RhoGEF and PH domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-97751546-4	chr7	97751501	97751701	+	687.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M3|LINE|L1	-13354.0	NM_175105	66333.0	Mm.29756	NM_175105	ENSMUSG00000042797	Aqp11	1700015P13Rik|AI648923|sjds	aquaporin 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-99526946-4	chr12	99526838	99527038	+	931.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36903.0	NR_136760	102639404.0	Mm.396324	NR_136760	ENSMUSG00000097917	Gm26839	-	predicted gene, 26839	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-20420065-3	chr11	20419971	20420171	+	656.277771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVB5_1-I_MM-int|LTR|ERVK	-87358.0	NM_018861	55963.0	Mm.6379	NM_018861	ENSMUSG00000020142	Slc1a4	ASCT-1|ASCT1|AW045657|SATT	solute carrier family 1 (glutamate/neutral amino acid transporter), member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71521240-2	chr8	71521140	71521340	+	730.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9471.0	NM_032398	84094.0	Mm.260768	NM_032398	ENSMUSG00000034845	Plvap	MECA32|Pv1	plasmalemma vesicle associated protein	protein-coding	0.993673276469333	2.46314607285543	0.817566595487415	2.48917398866957	1.50209668541774	1.56469300397904	0.823270140035778	0.80076397587232	-1.96727082192043	0.138549910786453	0.581095955353949
Merged-chr4-87944577-4	chr4	87944463	87944663	+	998.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027326, intron 2 of 10)	L1ME3A|LINE|L1	88844.0	NM_027326	70122.0	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-117146220-4	chr2	117146119	117146319	+	992.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001277256, intron 1 of 4)	intron (NM_001277256, intron 1 of 4)	25148.0	NM_033524	114715.0	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-84950793-3	chr18	84950718	84950918	+	861.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025969, intron 1 of 5)	intron (NM_025969, intron 1 of 5)	706.0	NM_025969	67105.0	Mm.250617	NM_025969	ENSMUSG00000024645	Timm21	1700034H14Rik|2700002I20Rik	translocase of inner mitochondrial membrane 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69553436-2	chr11	69553336	69553536	+	759.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_007911)	TTS (NM_007911)	-4328.0	NM_001081330	327954.0	Mm.247478	NM_177617	ENSMUSG00000005237	Dnah2	2900022L05Rik|4930564A01|D130094J20|D330014H01Rik|Dnahc2|Dnhd3	dynein, axonemal, heavy chain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36272690-4	chr1	36272586	36272786	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153408, intron 1 of 3)	intron (NM_153408, intron 1 of 3)	739.0	NM_153408	214854.0	Mm.389110	NM_153408	ENSMUSG00000047180	Neurl3	2010300P06Rik|Lincr	neuralized E3 ubiquitin protein ligase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71868084-3	chr17	71868062	71868262	+	778.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_007439)	TTS (NM_007439)	86215.0	NM_030179	78785.0	Mm.196382	NM_030179	ENSMUSG00000024059	Clip4	1700024K14Rik|1700074B05Rik|4833417L20Rik|5830409B12Rik|Rsnl2	CAP-GLY domain containing linker protein family, member 4	protein-coding	1.32016827163238	0.88484173691193	1.44164315348311	0.85272246362945	1.75367370405728	1.90005141712534	2.01660677917703	0.85522271001068	1.94078097544118	0.148433113156992	0.599495228340753
Merged-chr18-23498147-1	chr18	23498047	23498247	+	558.0	f1_balb.idr	intron (NM_001361215, intron 1 of 19)	intron (NM_001361215, intron 1 of 19)	665.0	NM_001285810	13527.0	Mm.94371	NM_010087	ENSMUSG00000024302	Dtna	2210407P21Rik|DTN-A|Dtn|Gm19389|a-DB-1|adbn	dystrobrevin alpha	protein-coding	0.386005768843944	0.950129107526668	0.404861990479779	0.865864956671304	0.387773967050567	0.960604400135146	0.406864563845064	1.27470961591215	0.7189558505064	0.690928265767522	1
Merged-chr5-86960713-4	chr5	86960602	86960802	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34199.0	NM_152811	71773.0	Mm.26741	NM_152811	ENSMUSG00000035836	Ugt2b1	1300012D20Rik	UDP glucuronosyltransferase 2 family, polypeptide B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106066123-6	chr11	106066041	106066241	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027346)	promoter-TSS (NM_027346)	34.0	NM_027346	70207.0	Mm.343857	NM_027346	ENSMUSG00000001983	Taco1	2310066I18Rik|Ccdc44	translational activator of mitochondrially encoded cytochrome c oxidase I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-54303833-2	chr13	54303733	54303933	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-67516.0	NM_009946	12890.0	Mm.268902	NM_009946	ENSMUSG00000025867	Cplx2	921-L|AI413745|AW492120|Gm34843	complexin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-20827625-4	chr14	20827531	20827731	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9031.0	NM_008873	18792.0	Mm.4183	NM_008873	ENSMUSG00000021822	Plau	u-PA|uPA	plasminogen activator, urokinase	protein-coding	3.13827084891225	2.9438208800838	4.14916551370843	3.31256903993822	3.82976596018681	3.10788599270968	4.17876289491567	3.78122215514232	0.454293466636305	0.416634576746008	0.897222495742637
Merged-chr13-6192153-2	chr13	6192053	6192253	+	558.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	330664.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-90200498-2	chr16	90200398	90200598	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D11|SINE|Alu	-20244.0	NM_011434	20655.0	Mm.276325	NM_011434	ENSMUSG00000022982	Sod1	B430204E11Rik|Cu/Zn-SOD|CuZnSOD|Ipo-1|Ipo1|SODC|Sod-1	superoxide dismutase 1, soluble	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-104590301-2	chr11	104590201	104590401	+	918.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13020.0	NM_001355755	17896.0	Mm.390355	NM_010858	ENSMUSG00000061086	Myl4	ALC1|AMLC|ELC|ELC1a|GT1|MLC1EMB|MLC1a|Myla	myosin, light polypeptide 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-16466578-4	chr5	16466568	16466768	+	833.549988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-86827.0	NM_001289460	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-128103578-2	chr8	128103478	128103678	+	942.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	174647.0	NR_105822	102465212.0		NR_105822	ENSMUSG00000099326	Mir21c	Gm28013|mmu-mir-21c	microRNA 21c	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-24638268-4	chr7	24638168	24638368	+	885.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133743, intron 2 of 4)	intron (NM_133743, intron 2 of 4)	1698.0	NM_133743	72434.0	Mm.281093	NM_133743	ENSMUSG00000057454	Lypd3	2310061G07Rik|C4.4a	Ly6/Plaur domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-91441899-1	chr6	91441799	91441999	+	547.0	f1_balb.idr	TTS (NR_038153)	TTS (NR_038153)	912.0	NR_038153	69798.0	Mm.229265	NR_038153	ENSMUSG00000100680	1810044D09Rik	-	RIKEN cDNA 1810044D09 gene	ncRNA	0.166547559619724	0.180071782293672	0.677662001617266	0.172168353748858	0.73753811314299	0.501378496968912	0.334241059864695	0.172764420392242	1.02557719949284	0.615656630503972	1
Merged-chr2-27448309-2	chr2	27448209	27448409	+	605.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001113574, exon 13 of 13)	3' UTR (NM_001113574, exon 13 of 13)	2321.0	NR_106102	102466836.0		NR_106102	ENSMUSG00000098812	Mir7578	Gm27789|mmu-mir-7578	microRNA 7578	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-120270935-2	chr10	120270835	120271035	+	990.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	43875.0	NM_025431	66225.0	Mm.291755	NM_025431	ENSMUSG00000020224	Llph	1190005P17Rik	LLP homolog, long-term synaptic facilitation (Aplysia)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-71003266-2	chr11	71003166	71003366	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178367, intron 1 of 11)	intron (NM_178367, intron 1 of 11)	1166.0	NM_178367	216877.0	Mm.35399	NM_178367	ENSMUSG00000040620	Dhx33	3110057P17Rik|9430096J02Rik|Ddx33	DEAH (Asp-Glu-Ala-His) box polypeptide 33	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122901853-4	chr5	122901749	122901949	+	974.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003953, intron 12 of 22)	intron (NM_001003953, intron 12 of 22)	-1499.0	NM_013910	30841.0	Mm.86406	NM_013910	ENSMUSG00000029475	Kdm2b	Cxxc2|Fbl10|Fbxl10|Jhdm1b|PCCX2	lysine (K)-specific demethylase 2B	protein-coding	3.42739631058971	3.67481873883018	4.15395642716808	3.16833375040067	3.93337806966785	3.61040784941081	3.57995515163025	4.21355350614526	0.30703502644365	0.544973304918456	0.956287659200869
Merged-chr9-107985282-4	chr9	107985164	107985364	+	978.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026597, intron 1 of 1)	intron (NM_026597, intron 1 of 1)	652.0	NM_026597	68176.0	Mm.76166	NM_026597	ENSMUSG00000042106	Fam212a	6230427J02Rik|Inka1	family with sequence similarity 212, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70334697-2	chr11	70334597	70334797	+	784.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12167.0	NM_145684	11685.0	Mm.274093	NM_145684	ENSMUSG00000018907	Alox12e	12-LOX|8-LOX|AW259591|Alox12-ps1|Alox12-ps2|Aloxe|e-LOX1	arachidonate lipoxygenase, epidermal	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-140489727-3	chr6	140489620	140489820	+	925.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144920, intron 3 of 30)	intron (NM_144920, intron 3 of 30)	65621.0	NM_144920	109135.0	Mm.247670	NM_144920	ENSMUSG00000030231	Plekha5	2810431N21Rik|AI428202|AK129423|AMH-Cre|Ayu21-9|Gt(pU21)9Imeg|Pepp2|Tg(AMH-cre)1Flor	pleckstrin homology domain containing, family A member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-59333628-4	chr10	59333523	59333723	+	779.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316370, intron 1 of 13)	RSINE1|SINE|B4	10327.0	NM_001316370	18451.0	Mm.2212	NM_011030	ENSMUSG00000019916	P4ha1	AL022634|P4ha	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-62675557-2	chr4	62675457	62675657	+	740.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310706, intron 1 of 6)	intron (NM_001310706, intron 1 of 6)	1583.0	NM_001310706	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-67262137-2	chr7	67262037	67262237	+	575.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357324, intron 7 of 11)	B3|SINE|B2	39521.0	NM_001191051	75099.0	Mm.121691	NM_175215	ENSMUSG00000043831	Lysmd4	4930506D23Rik	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-29371708-2	chr11	29371608	29371808	+	605.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2464.0	NM_176841	108686.0	Mm.338284	NM_176841	ENSMUSG00000032740	Ccdc88a	A430106J12Rik|AI848406|Ape|C130096N06Rik|C330012F17Rik|D130005J21Rik|Girdin|Giv|Grdn|Hkrp1	coiled coil domain containing 88A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-25054991-2	chr2	25054891	25055091	+	869.833374	f1_balb.idr|f1_c57bl6.idr	TTS (NM_146251)	TTS (NM_146251)	612.0	NM_001177655	56876.0	Mm.42956	NM_020276	ENSMUSG00000006476	Nsmf	Jacob|Nelf	NMDA receptor synaptonuclear signaling and neuronal migration factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-46855902-2	chr17	46855802	46856002	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24489.0	NM_001100452	210982.0	Mm.37642	NM_001100452	ENSMUSG00000036568	Bicral	Gltscr1l|mKIAA0240	BRD4 interacting chromatin remodeling complex associated protein like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-160074856-2	chr2	160074751	160074951	+	765.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	58198.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	-2.18138529563533	-2.15523716995652	-2.1631445789866	-2.16963996020037	-2.05513010215571	-2.15352360143315	-2.16135451490766	-2.16847729006863	0.759018020146679	0.829933115115583	1
Merged-chr10-95507052-4	chr10	95506952	95507152	+	953.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-5103.0	NM_001359477	67270.0	Mm.30008	NM_026065	ENSMUSG00000062981	Mrpl42	2700009F22Rik|2900055D03Rik|D10Ertd322e|HSPC204|L31mt|L42mt|MRP-L31|MRP-L42|MRP-S32|PTD007|Rpml31|S32mt	mitochondrial ribosomal protein L42	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-47713465-4	chr8	47713362	47713562	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359133, intron 1 of 2)	CpG	469.0	NM_001359133	70925.0	Mm.393807	NM_172407	ENSMUSG00000038069	Cdkn2aip	4921511I16Rik|AW208986|CARF	CDKN2A interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-122459803-4	chr7	122459746	122459946	+	962.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316672, intron 5 of 16)	intron (NM_001316672, intron 5 of 16)	170721.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117330803-4	chr10	117330745	117330945	+	933.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37977.0	NM_013590	17110.0	Mm.177539	NM_013590	ENSMUSG00000069515	Lyz1	Lyz|Lyzf3|Lzp-s	lysozyme 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-102414100-2	chr11	102414000	102414200	+	960.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4|SINE|ID	-6583.0	NM_026542	68066.0	Mm.44226	NM_026542	ENSMUSG00000018677	Slc25a39	3010027G13Rik|D11Ertd333e	solute carrier family 25, member 39	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-57694996-3	chr15	57694902	57695102	+	926.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_199449, exon 1 of 4)	5' UTR (NM_199449, exon 1 of 4)	335.0	NM_199449	387609.0	Mm.36557	NM_199449	ENSMUSG00000071757	Zhx2	Afr-1|Afr1|Raf|mKIAA0854	zinc fingers and homeoboxes 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-5033869-5	chr2	5033849	5034049	+	869.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356487, intron 9 of 13)	intron (NM_001356487, intron 9 of 13)	-21158.0	NM_027290	70024.0	Mm.23828	NM_027290	ENSMUSG00000026669	Mcm10	2410041F14Rik|AU018508|C330019M07Rik|C79164	minichromosome maintenance 10 replication initiation factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-5513117-2	chr11	5513017	5513217	+	808.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-7524.0	NM_013842	22433.0	Mm.469937	NM_013842	ENSMUSG00000020484	Xbp1	D11Ertd39e|TREB-5|TREB5|XBP-1	X-box binding protein 1	protein-coding	-0.538673675333784	-0.981089336704586	-0.992568154151272	-0.698280499963765	-0.997513107734042	-0.978601829078858	-0.989969601489856	-0.994387082668474	-2.78006992060951	0.375475650665873	1
Merged-chr14-8112126-3	chr14	8112049	8112249	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360314, intron 1 of 19)	intron (NM_001360314, intron 1 of 19)	13938.0	NM_001360315	218699.0	Mm.29515	NM_145458	ENSMUSG00000033885	Pxk	C230080L11Rik|D14Ertd813e|Monaka|Slob	PX domain containing serine/threonine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-181186748-4	chr2	181186667	181186867	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_151465)	promoter-TSS (NR_151465)	-55.0	NR_151465	66496.0	Mm.213943	NM_025598	ENSMUSG00000016344	Ppdpf	0610012G23Rik|2610317A05Rik|2700038C09Rik|3110053G12Rik	pancreatic progenitor cell differentiation and proliferation factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-40247033-4	chr10	40246931	40247131	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023323)	promoter-TSS (NM_023323)	8.0	NM_023323	67239.0	Mm.11480	NM_023323	ENSMUSG00000038510	Rpf2	2810470K21Rik|AU040229|AU043242|Bxdc1	ribosome production factor 2 homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-96743436-4	chr15	96743333	96743533	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43705.0	NM_175121	67760.0	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-59012177-2	chr3	59012077	59012277	+	762.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177855, intron 1 of 43)	intron (NM_177855, intron 1 of 43)	5199.0	NM_177855	329650.0	Mm.240059	NM_177855	ENSMUSG00000056476	Med12l	A130035F20|A630079M02|AU044581|TRALPUSH	mediator complex subunit 12-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166905995-4	chr2	166905908	166906108	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023565)	promoter-TSS (NM_023565)	-88.0	NM_023565	110750.0	Mm.22417	NM_023565	ENSMUSG00000002718	Cse1l	2610100P18Rik|AA407533|Capts|Cas|Xpo2	chromosome segregation 1-like (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97998566-2	chr11	97998466	97998666	+	933.916626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2393.0	NR_152188	217151.0	Mm.277896	NM_207231	ENSMUSG00000038352	Arl5c	Arl12|BC065791	ADP-ribosylation factor-like 5C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-59498825-1	chr16	59498725	59498925	+	809.666687	f0_balb.idr	intron (NM_174848, intron 16 of 18)	RLTR45|LTR|ERVK	27050.0	NM_025910	67014.0	Mm.289150	NM_025910	ENSMUSG00000022724	Riox2	1810047J07Rik|2410057H13Rik|3830408E23Rik|AI449204|Mina	ribosomal oxygenase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-137116903-4	chr2	137116839	137117039	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013822)	promoter-TSS (NM_013822)	-419.0	NM_013822	16449.0	Mm.22398	NM_013822	ENSMUSG00000027276	Jag1	ABE2|Gsfabe2|Htu|Ozz|Ser-1	jagged 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-131352907-4	chr2	131352803	131353003	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178607)	promoter-TSS (NM_178607)	-11.0	NM_178607	51902.0	Mm.477523	NM_178607	ENSMUSG00000048911	Rnf24	2810473M14Rik|4930505A13Rik|AI317164|C86507|D2Ertd504e	ring finger protein 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-132119013-2	chr2	132118913	132119113	+	668.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355430, intron 1 of 15)	intron (NM_001355430, intron 1 of 15)	26095.0	NM_001355431	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-80046854-4	chr18	80046765	80046965	+	998.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053117)	promoter-TSS (NM_053117)	-30.0	NM_053117	93737.0	Mm.24678	NM_053117	ENSMUSG00000056214	Pard6g	2410049N21Rik|Par6a	par-6 family cell polarity regulator gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-59204542-2	chr11	59204442	59204642	+	594.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001302334, exon 3 of 4)	exon (NM_001302334, exon 3 of 4)	2056.0	NM_001302336	67212.0	Mm.282694	NM_026035	ENSMUSG00000036860	Mrpl55	2810038N09Rik|L55mt|MRP-L55	mitochondrial ribosomal protein L55	protein-coding	1.83541094557327	2.47504434975632	0.983916862593183	0.964176108423584	1.8526633208902	2.31939145601167	0.989447792355574	1.57341109492524	0.0858331266307377	0.945987562491884	0.998431161219273
Merged-chr11-120358904-2	chr11	120358804	120359004	+	713.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2630.0	NM_172802	238021.0	Mm.481403	NM_172802	ENSMUSG00000025380	Fscn2	A930022G03|Ahl8|C630046B20Rik	fascin actin-bundling protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129134935-3	chr4	129134833	129135033	+	659.888855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2066.0	NM_027402	384061.0	Mm.44075	NM_027402	ENSMUSG00000001334	Fndc5	1500001L03Rik|AI836596|C87088|PeP|Pxp	fibronectin type III domain containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-34103262-2	chr10	34103162	34103362	+	695.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162937, intron 6 of 6)	RLTR12D|LTR|ERVK	-6743.0	NM_178908	103511.0	Mm.66334	NM_178908	ENSMUSG00000049872	Fam26e	BB146404|Calhm5	family with sequence similarity 26, member E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-74833558-2	chr11	74833458	74833658	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010813, intron 1 of 5)	intron (NM_010813, intron 1 of 5)	2634.0	NM_010813	17428.0	Mm.3759	NM_010813	ENSMUSG00000000282	Mnt	Rox|bHLHd3	max binding protein	protein-coding	-1.84335282827126	-1.8131721693203	-1.82229904969614	-1.82979614098203	-1.69762670694229	-1.6675868413945	-1.82023292403457	-1.82845416522631	1.43472749533542	0.684151459466795	1
Merged-chr7-3629788-6	chr7	3629645	3629845	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027328)	promoter-TSS (NM_027328)	184.0	NM_023524	69714.0	Mm.358730	NM_023524	ENSMUSG00000006335	Tfpt	2400004F01Rik|AI450389|Amida|FB1	TCF3 (E2A) fusion partner	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-6602948-2	chr11	6602848	6603048	+	703.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081652, intron 1 of 7)	intron (NM_001081652, intron 1 of 7)	3106.0	NM_001081652	192950.0	Mm.337771	NM_001081652	ENSMUSG00000041073	Nacad	D230024G13Rik|mKIAA0363	NAC alpha domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-98789838-2	chr15	98789738	98789938	+	898.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021279)	promoter-TSS (NM_021279)	-19.0	NM_021279	22408.0	Mm.1123	NM_021279	ENSMUSG00000022997	Wnt1	Int-1|Wnt-1|sw|swaying	wingless-type MMTV integration site family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-95833797-4	chr8	95833702	95833902	+	775.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19689.0	NM_172758	234595.0	Mm.29267	NM_172758	ENSMUSG00000036534	Slc38a7	D430050E18	solute carrier family 38, member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10215089-2	chr19	10214989	10215189	+	553.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001033481, exon 19 of 26)	exon (NM_001033481, exon 19 of 26)	9056.0	NM_001163431	69038.0	Mm.375100	NM_026919	ENSMUSG00000036372	Tmem258	1810006K21Rik	transmembrane protein 258	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-24698644-3	chr1	24698564	24698764	+	908.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026719, intron 3 of 15)	intron (NM_026719, intron 3 of 15)	19746.0	NM_001310483	68421.0	Mm.336563	NM_026719	ENSMUSG00000073725	Lmbrd1	0910001K20Rik|AV347960	LMBR1 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-57468087-4	chr9	57467934	57468134	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020270)	promoter-TSS (NM_020270)	26.0	NM_001301634	56807.0	Mm.102278	NM_020270	ENSMUSG00000040722	Scamp5	Sc5	secretory carrier membrane protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167951482-4	chr2	167951376	167951576	+	892.2416380000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011201, intron 1 of 8)	intron (NM_011201, intron 1 of 8)	19149.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-125408145-4	chr5	125408051	125408251	+	957.1749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18134.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10749033-2	chr19	10748933	10749133	+	851.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_027805, intron 1 of 3)	intron (NR_027805, intron 1 of 3)	8086.0	NR_027805	403202.0	Mm.34482	NM_207529	ENSMUSG00000067577	A430093F15Rik	Gm674	RIKEN cDNA A430093F15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-104288355-2	chr13	104288255	104288455	+	726.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_136938, intron 1 of 26)	intron (NR_136938, intron 1 of 26)	520.0	NM_001081020	108154.0	Mm.208125	NM_175496	ENSMUSG00000046169	Adamts6	A930019D11Rik|ADAM-TS6|b2b1879.1Clo|b2b2029Clo|b2b2182Clo|b2b2187.1Clo|b2b2228Clo	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-86663736-4	chr17	86663631	86663831	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	-90133.0	NM_010137	13819.0	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16046587-4	chr7	16046488	16046688	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25257.0	NM_001347559	666528.0	Mm.290718	NM_001099277	ENSMUSG00000078796	Zfp541	EG666528|Znf541	zinc finger protein 541	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-15197174-2	chr18	15197074	15197274	+	731.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45728.0	NM_134112	106931.0	Mm.329299	NM_134112	ENSMUSG00000036225	Kctd1	4933402K10Rik|AI661543|AW553000	potassium channel tetramerisation domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-115414296-4	chr8	115414187	115414387	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	AmnSINE1|SINE|Deu	292607.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-107687969-4	chr5	107687887	107688087	+	938.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	15493.0	NR_045871	654809.0	Mm.399159	NR_045871	ENSMUSG00000106333	4930428O21Rik	-	RIKEN cDNA 4930428O21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-52000809-4	chr11	52000689	52000889	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009458)	promoter-TSS (NM_009458)	-323.0	NM_009458	22210.0	Mm.384918	NM_009458	ENSMUSG00000020390	Ube2b	E2-14k|HR6B|Rad6b|mHR6B	ubiquitin-conjugating enzyme E2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127480759-2	chr10	127480659	127480859	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359246, intron 13 of 23)	intron (NM_001359246, intron 13 of 23)	-20927.0	NM_001359751	237611.0	Mm.32087	NM_177707	ENSMUSG00000040287	Stac3	9830125E18	SH3 and cysteine rich domain 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-53540944-2	chr19	53540844	53541044	+	566.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001085390, exon 4 of 4)	exon (NM_001085390, exon 4 of 4)	11626.0	NM_001085390	240672.0	Mm.482424	NM_001085390	ENSMUSG00000034765	Dusp5	Gm337	dual specificity phosphatase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88191817-2	chr3	88191717	88191917	+	657.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14032.0	NR_045997	76642.0	Mm.424420	NR_045997	ENSMUSG00000096935	1700113A16Rik	2210408E11Rik|AA408983	RIKEN cDNA 1700113A16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-84154137-2	chr1	84154037	84154237	+	691.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001003948, intron 2 of 2)	intron (NM_001003948, intron 2 of 2)	64824.0	NR_105771	102465181.0		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56762190-4	chr17	56762065	56762265	+	999.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2586.0	NM_001360405	224907.0	Mm.293973	NM_144858	ENSMUSG00000007603	Dus3l	AI662135|AW557805	dihydrouridine synthase 3-like (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-22316396-2	chr16	22316296	22316496	+	674.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21408.0	NR_153764	100043507.0		NR_153764		Gng5-ps	Gm15776	G protein subunit gamma 5, pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-10522397-2	chr16	10522297	10522497	+	596.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007575, intron 15 of 18)	intron (NM_007575, intron 15 of 18)	20657.0	NM_021428	58239.0	Mm.353006	NM_021428	ENSMUSG00000038055	Dexi	1810029J14Rik|AI836170|AW413143|D16Bwg0586e|Myle	dexamethasone-induced transcript	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-106929670-3	chr8	106929577	106929777	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6073.0	NM_009229	20650.0	Mm.30228	NM_009229	ENSMUSG00000041308	Sntb2	Snt2	syntrophin, basic 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-56980826-2	chr1	56980726	56980926	+	639.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358580)	promoter-TSS (NM_001358580)	-578.0	NM_001358580	212712.0	Mm.145599	NM_139146	ENSMUSG00000038331	Satb2	mKIAA1034	special AT-rich sequence binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-81424566-4	chr17	81424471	81424671	+	836.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 7 of 8)	intron (NR_104580, intron 7 of 8)	313816.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-163995073-4	chr2	163994988	163995188	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018753)	promoter-TSS (NM_018753)	-109.0	NM_018753	54401.0	Mm.34319	NM_018753	ENSMUSG00000018326	Ywhab	1300003C17Rik|14-3-3b	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-139579185-4	chr4	139579078	139579278	+	975.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205173, intron 1 of 8)	intron (NM_001205173, intron 1 of 8)	4458.0	NM_001205173	212632.0	Mm.30464	NM_183148	ENSMUSG00000041025	Iffo2	C79267	intermediate filament family orphan 2	protein-coding	5.20931066053957	5.3099244203902	5.74537512019424	5.09243318907455	3.96630758586627	3.91076438335655	4.63624160987126	3.22028813986788	-1.64262614176259	2.36258300994771e-05	0.000928371319432947
Merged-chr17-73883327-2	chr17	73883227	73883427	+	733.666626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_011723)	TTS (NM_011723)	66869.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91409526-2	chr16	91409426	91409626	+	728.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008349, intron 2 of 6)	intron (NM_008349, intron 2 of 6)	3291.0	NM_008349	16155.0	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-57796746-2	chr6	57796646	57796846	+	562.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146168, intron 1 of 4)	intron (NM_146168, intron 1 of 4)	28379.0	NM_146168	232023.0	Mm.24642	NM_146168	ENSMUSG00000037788	Vopp1	AW146242|Ecop	vesicular, overexpressed in cancer, prosurvival protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-67842964-4	chr9	67842867	67843067	+	910.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177184, intron 1 of 84)	intron (NM_177184, intron 1 of 84)	2571.0	NM_177184	320528.0	Mm.241454	NM_177184	ENSMUSG00000035284	Vps13c	AI552542|AV026040|C230055H22Rik|W51662|chorein	vacuolar protein sorting 13C	protein-coding	4.3973522391386	4.56330128115436	3.55737560437394	4.15680158224411	4.39206174144155	3.97556284495304	3.26385084223403	4.37711721064191	-0.183886616888989	0.694671579547673	0.997836418558882
Merged-chr17-78915916-2	chr17	78915814	78916014	+	624.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177402)	promoter-TSS (NM_001177402)	-585.0	NM_001177403	68554.0	Mm.391820	NM_001177402	ENSMUSG00000062691	Cebpzos	1110001A16Rik	CCAAT/enhancer binding protein (C/EBP), zeta, opposite strand	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-148473209-4	chr5	148473119	148473319	+	877.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1C|Other|Other	-73315.0	NM_007513	11987.0	Mm.275489	NM_007513	ENSMUSG00000041313	Slc7a1	4831426K01Rik|AI447493|Atrc-1|Atrc1|Cat1|Rec-1|Rev-1|mCAT-1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-24586743-4	chr5	24586639	24586839	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133913)	promoter-TSS (NM_133913)	-11.0	NM_133913	100910.0	Mm.140672	NM_133913	ENSMUSG00000038181	Chpf2	2010209O12Rik|AW060945|Gm42230|mKIAA1402|mir-671	chondroitin polymerizing factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-95919582-4	chr5	95919483	95919683	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37356.0	NM_018866	55985.0	Mm.10116	NM_018866	ENSMUSG00000023078	Cxcl13	4631412M08Rik|ANGIE2|Angie|BCA-1|BLC|BLR1L|Scyb13	chemokine (C-X-C motif) ligand 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-6411219-4	chr18	6411139	6411339	+	911.93335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	79407.0	NR_035446	100316773.0		NR_035446	ENSMUSG00000084514	Mir1893	Mirn1893|mmu-mir-1893	microRNA 1893	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-15080648-3	chr4	15080547	15080747	+	827.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178617, intron 3 of 12)	intron (NM_178617, intron 3 of 12)	68484.0	NM_178617	69352.0	Mm.389031	NM_178617	ENSMUSG00000040536	Necab1	1700003H21Rik|Efcbp1|STIP-1	N-terminal EF-hand calcium binding protein 1	protein-coding	-1.58994551673671	-1.55912852307891	-1.56844783632235	-1.57610299769523	-1.18549093183599	-1.55710898902261	-1.56633814807757	-1.57473272746952	1.78703309985663	0.610309988231842	1
Merged-chr11-117082514-2	chr11	117082414	117082614	+	552.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5166.0	NR_105853	102465258.0		NR_105853	ENSMUSG00000104740	Mir6516	mmu-mir-6516	microRNA 6516	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28880006-3	chr17	28879901	28880101	+	809.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034885, intron 5 of 9)	intron (NM_001034885, intron 5 of 9)	21590.0	NM_001034885	433091.0	Mm.328925	NM_001034885	ENSMUSG00000043286	Pnpla1	-	patatin-like phospholipase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5512913-4	chr19	5512809	5513009	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2392.0	NM_001024560	225861.0	Mm.20071	NM_001024560	ENSMUSG00000056185	Snx32	B930037P14Rik|Snx6b	sorting nexin 32	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-5952096-2	chr15	5951996	5952196	+	549.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	92608.0	NR_155428	105245876.0	Mm.128197	NR_155428		Gm41259	-	predicted gene, 41259	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-32194956-4	chr16	32194850	32195050	+	800.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15150.0	NM_001033539	328660.0	Mm.441006	NM_001033539	ENSMUSG00000075269	Bex6	B020003O03Rik	brain expressed family member 6	protein-coding	0.70558564913914	0.421661492970924	1.53391715924652	1.12733770560981	0.84118436629747	0.423969898751597	0.413621589044758	0.404670423353596	-2.57640946606596	0.148260749127618	0.598971216270614
Merged-chr10-118857240-3	chr10	118857148	118857348	+	967.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11655.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	1.56844130112288	1.90837060233598	2.18008502625548	1.49489986358377	1.26474399555178	2.17313527722383	1.11126255729754	2.29954664119443	0.0406911013358039	0.970634410666643	0.998431161219273
Merged-chr4-142076593-2	chr4	142076493	142076693	+	986.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145402, intron 1 of 2)	intron (NM_145402, intron 1 of 2)	-7705.0	NR_027137	100038693.0	Mm.402714	NR_027137	ENSMUSG00000073728	Tmem51os1	Gm10565|Tmem51as1	Tmem51 opposite strand 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-38481348-4	chr2	38481280	38481480	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30317.0	NM_021606	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-4918274-4	chr12	4918191	4918391	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362349, intron 1 of 27)	intron (NM_001362349, intron 1 of 27)	938.0	NM_001362349	320817.0	Mm.210966	NM_001099628	ENSMUSG00000052812	Atad2b	1110014E10Rik|BC032887|C79189|D530031C13Rik	ATPase family, AAA domain containing 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-31031386-2	chr7	31031286	31031486	+	587.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	8931.0	NR_106017	102465635.0		NR_106017	ENSMUSG00000098783	Mir7050	Gm27578|mmu-mir-7050	microRNA 7050	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-107869873-4	chr5	107869770	107869970	+	981.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007964, intron 1 of 17)	intron (NM_007964, intron 1 of 17)	5237.0	NM_007964	14020.0	Mm.35796	NM_007964	ENSMUSG00000011831	Evi5	NB4S	ecotropic viral integration site 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-112449348-4	chr2	112449255	112449455	+	856.091675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5670.0	NM_133749	73024.0	Mm.268027	NM_133749	ENSMUSG00000055943	Emc7	2900064A13Rik|AI451465|ORF3|c11orf3	ER membrane protein complex subunit 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30796159-2	chr2	30796059	30796259	+	838.666626	f1_balb.idr|f1_c57bl6.idr	exon (NM_198000, exon 6 of 7)	exon (NM_198000, exon 6 of 7)	5578.0	NM_198000	73598.0	Mm.34166	NM_198000	ENSMUSG00000044320	1700001O22Rik	1700113K14Rik|4930549G18Rik	RIKEN cDNA 1700001O22 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-61099164-4	chr18	61099049	61099249	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6423.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-51845106-4	chr12	51844972	51845172	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15536.0	NM_144788	207304.0	Mm.249391	NM_144788	ENSMUSG00000035247	Hectd1	A630086P08Rik|AI844876|b2b327Clo|opm	HECT domain E3 ubiquitin protein ligase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167366895-2	chr2	167366795	167366995	+	647.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17717.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-35166331-4	chr9	35166233	35166433	+	644.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027030, intron 2 of 5)	intron (NM_027030, intron 2 of 5)	9654.0	NM_027030	69305.0	Mm.229110	NM_027030	ENSMUSG00000032040	Dcps	1700001E16Rik|AA408441	decapping enzyme, scavenger	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-31572065-2	chr2	31571965	31572165	+	547.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033389)	promoter-TSS (NM_001033389)	-586.0	NM_001033389	320267.0	Mm.207261	NM_001033389	ENSMUSG00000026843	Fubp3	A330051M14Rik|AV006371|FBP3|Marta2	far upstream element (FUSE) binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-17130663-2	chr16	17130563	17130763	+	991.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_022324, exon 3 of 3)	exon (NM_022324, exon 3 of 3)	1720.0	NM_022324	64136.0	Mm.30222	NM_022324	ENSMUSG00000022769	Sdf2l1	-	stromal cell-derived factor 2-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-32645227-2	chr11	32645023	32645223	+	770.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271349, intron 1 of 11)	L1_Mus1|LINE|L1	2568.0	NM_001271347	103583.0	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	-2.18308165884198	-2.15547475440471	-2.16382331017202	-2.1706810624505	-2.18114370519566	-2.15366558754311	-2.03057248461154	-2.16945352807143	0.759018020146679	0.829933115115583	1
Merged-chr11-70849414-4	chr11	70849364	70849564	+	942.4833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291143, intron 2 of 18)	B2_Mm1a|SINE|B2	4703.0	NM_001291142	54189.0	Mm.7087	NM_019400	ENSMUSG00000020817	Rabep1	Rab5ep|rabaptin-5|rabaptin-5alpha	rabaptin, RAB GTPase binding effector protein 1	protein-coding	-0.846390191011184	-0.831819789139191	0.193351182241113	-0.84020487638748	-0.84545812403323	-0.830604595290638	-0.835538330417158	-0.839564684224917	-3.95723586738745	0.142861010112219	1
Merged-chr6-47317414-4	chr6	47317294	47317494	+	831.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14_RN|LTR|ERV1	72998.0	NM_025771	66797.0	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-4113474-1	chr10	4113374	4113574	+	802.0	f1_c57bl6.idr	intron (NM_001170785, intron 26 of 27)	intron (NM_001170785, intron 26 of 27)	99646.0	NR_152620	102632515.0	Mm.416995	NR_152620	ENSMUSG00000111266	Gm30570	-	predicted gene, 30570	ncRNA	0.015051226182587	0.0393015342793647	0.555809383335506	0.0253432294380327	0.336870275075649	0.041055901408703	1.1683101783101	0.0264162346696788	1.86913324792778	0.378476918592078	1
Merged-chr9-114793548-2	chr9	114793449	114793649	+	666.25	f0_c57.idr|f1_c57bl6.idr	intron (NM_027294, intron 2 of 3)	intron (NM_027294, intron 2 of 3)	-11556.0	NM_001252479	102545.0	Mm.35600	NM_133978	ENSMUSG00000032436	Cmtm7	AI481279|Cklfsf7|LNV	CKLF-like MARVEL transmembrane domain containing 7	protein-coding	3.94780758780832	3.92405790291709	2.85043061897579	3.69516828923826	1.87306128452568	2.85181304283792	1.51704372282897	2.5184286649046	-2.40539508095003	0.000823250866006511	0.0165375446896443
Merged-chr3-87375955-1	chr3	87375855	87376055	+	623.0	f1_balb.idr	promoter-TSS (NM_001310545)	promoter-TSS (NM_001310545)	-432.0	NM_001310545	229499.0	Mm.255203	NM_153090	ENSMUSG00000059994	Fcrl1	A230020G22Rik|Bxmas1|Bxmh1|Bxmh1b|Fcrh1|Fcrh1l|Fcrh1s|Ifgp1	Fc receptor-like 1	protein-coding	-0.349417834622663	0.520987209169207	-0.339358810119218	-0.168201442626625	-0.348480909339466	-0.333386551721029	-0.338282070002269	-0.01634815655297	-1.9650615211158	0.424392220366569	1
Merged-chr1-182292239-4	chr1	182292149	182292349	+	821.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A2-int|LTR|ERVL-MaLR	-8585.0	NR_015458	67330.0	Mm.331019	NR_015458	ENSMUSG00000100147	1700047M11Rik	-	RIKEN cDNA 1700047M11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-20811958-1	chr18	20811858	20812058	+	602.0	f0_balb.idr	Intergenic	Intergenic	-65554.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-84814437-4	chr3	84814359	84814559	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1118.0	NM_001177773	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	4.15376231610068	4.16832100213643	3.45740199688583	4.16025399995631	4.23122588330895	4.69504890957325	3.13278684054959	4.77880300638396	0.438227916447222	0.365494781715402	0.861036332257394
Merged-chr15-34022961-2	chr15	34022861	34023061	+	896.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59758.0	NM_001357926	67154.0	Mm.130883	NM_026002	ENSMUSG00000022255	Mtdh	2610103J23Rik|3D3|3D3/Lyric|AEG-1|AV353288|D8Bwg1112e|Lyric	metadherin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-84427885-2	chr2	84427785	84427985	+	645.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2619.0	NM_018782	54598.0	Mm.75467	NM_018782	ENSMUSG00000059588	Calcrl	AV071593|CRLR	calcitonin receptor-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-5508566-2	chr6	5508466	5508666	+	929.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12288.0	NM_013743	27273.0	Mm.235547	NM_013743	ENSMUSG00000019577	Pdk4	AV005916	pyruvate dehydrogenase kinase, isoenzyme 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-132029924-4	chr2	132029831	132030031	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175445)	promoter-TSS (NM_175445)	57.0	NM_175445	215653.0	Mm.204737	NM_175445	ENSMUSG00000027339	Rassf2	3830431H01Rik|9030412M04Rik|AI852669|AW495050	Ras association (RalGDS/AF-6) domain family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-26389299-4	chr2	26389192	26389392	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173180)	promoter-TSS (NM_173180)	24.0	NM_001085407	68112.0	Mm.253771	NM_026563	ENSMUSG00000026927	Sdccag3	C330016H24Rik|C630038K21Rik	serologically defined colon cancer antigen 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-34301077-2	chr16	34300977	34301177	+	910.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_177357, intron 9 of 59)	intron (NM_177357, intron 9 of 59)	212950.0	NM_001164268	545156.0	Mm.82274	NM_177357	ENSMUSG00000061751	Kalrn	2210407G14Rik|AV235988|DUET|E530005C20Rik|Gm539|Hapip|TRAD	kalirin, RhoGEF kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44491506-2	chr7	44491406	44491606	+	647.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355107, intron 6 of 7)	intron (NM_001355107, intron 6 of 7)	5007.0	NM_197991	69683.0	Mm.294759	NM_197991	ENSMUSG00000008140	Emc10	2310044H10Rik|5430410O10Rik|Inm02|Mirta22	ER membrane protein complex subunit 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-113390239-2	chr13	113390139	113390339	+	672.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	112605.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-130914164-4	chr4	130914072	130914272	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010686, intron 1 of 7)	L3b|LINE|CR1	838.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-59262317-4	chr3	59262219	59262419	+	793.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177855, exon 34 of 44)	exon (NM_177855, exon 34 of 44)	666.0	NM_027571	70839.0	Mm.422675	NM_027571	ENSMUSG00000036353	P2ry12	2900079B22Rik|4921504D23Rik|P2Y12	purinergic receptor P2Y, G-protein coupled 12	protein-coding	2.40093572354258	1.4394431394443	3.12061068683575	2.30325643472044	2.51774637731067	3.017712660161	2.82929453536681	1.62998960204985	0.27916555207618	0.755483160554878	0.998431161219273
Merged-chr11-70791186-2	chr11	70791086	70791286	+	952.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001045526, exon 5 of 5)	3' UTR (NM_001045526, exon 5 of 5)	21375.0	NM_001045526	327957.0	Mm.164325	NM_001045526	ENSMUSG00000057135	Scimp	A430084P05Rik	SLP adaptor and CSK interacting membrane protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-22898776-3	chr5	22898686	22898886	+	930.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359998, intron 1 of 3)	MIR3|SINE|MIR	-151902.0	NR_027362	330052.0	Mm.459265	NR_027362	ENSMUSG00000105076	A930003O13Rik	-	RIKEN cDNA A930003O13 gene	ncRNA	3.35260849155796	3.42448599485027	3.44685337009912	3.3511966390591	2.01588235910151	1.52770242034135	2.78817535868884	1.7057095066152	-2.43843956770156	0.00127302635613091	0.0236436071530319
Merged-chr11-16525095-3	chr11	16525002	16525202	+	899.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16618.0	NM_001109971	20335.0	Mm.325350	NM_011343	ENSMUSG00000078974	Sec61g	-	SEC61, gamma subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-11593539-4	chr2	11593422	11593622	+	588.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152824, intron 5 of 11)	intron (NM_152824, intron 5 of 11)	9677.0	NM_152824	76938.0	Mm.182769	NM_152824	ENSMUSG00000037197	Rbm17	2700027J02Rik	RNA binding motif protein 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-20882804-4	chr10	20882711	20882911	+	719.633301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69736.0	NM_026203	52906.0	Mm.253280	NM_026203	ENSMUSG00000019986	Ahi1	1700015F03Rik|Ahi-1|D10Bwg0629e	Abelson helper integration site 1	protein-coding	2.55995900826516	2.04754407561588	2.27097101320861	1.29031380728166	1.6723929106928	2.06292657958968	2.88306119673483	2.99778401119216	0.86192403380202	0.360193238483251	0.856327306866984
Merged-chr6-116673872-4	chr6	116673800	116674000	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178045)	promoter-TSS (NM_178045)	-64.0	NM_178045	213391.0	Mm.257931	NM_178045	ENSMUSG00000042129	Rassf4	3830411C14Rik|AD037|AI586137	Ras association (RalGDS/AF-6) domain family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-5141985-3	chr18	5141878	5142078	+	856.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	23753.0	NR_153824	102637682.0	Mm.451914	NR_153824		Gm26682	Gm38715	predicted gene, 26682	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-38070739-2	chr7	38070640	38070840	+	846.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	36750.0	NM_007633	12447.0	Mm.16110	NM_007633	ENSMUSG00000002068	Ccne1	AW538188|CycE1	cyclin E1	protein-coding	0.921989957571894	1.216796590558	0.495882654397602	0.486920725801248	0.474040575821051	1.55861127403755	0.498422530402282	1.12157126940634	0.799820788418527	0.639348044596556	0.982599433509505
Merged-chr7-25278430-4	chr7	25278300	25278500	+	962.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302811, intron 2 of 20)	CpG	-3779.0	NM_027882	71722.0	Mm.28833	NM_027882	ENSMUSG00000005442	Cic	1200010B10Rik|mKIAA0306	capicua transcriptional repressor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-21836874-4	chr16	21836742	21836942	+	836.645813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42495.0	NR_037957	100043489.0	Mm.326535	NR_037957	ENSMUSG00000097290	1300002E11Rik	1500026P21Rik	RIKEN cDNA 1300002E11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-28481865-1	chr18	28481765	28481965	+	601.0	f1_balb.idr	Intergenic	B3A|SINE|B2	-78299.0	NR_045398	320624.0	Mm.50107	NR_045398		4930474G06Rik	-	RIKEN cDNA 4930474G06 gene	ncRNA	-1.06749048699405	-1.18409811726534	-1.19455639931541	-1.20314714357788	-0.732344966823593	-1.18183176391733	-1.19218887349829	-1.20160940446224	1.4740915481595	0.659875114534777	1
Merged-chr1-32144651-2	chr1	32144551	32144751	+	555.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	-28071.0	NM_133235	170771.0	Mm.336594	NM_133235	ENSMUSG00000026058	Khdrbs2	6330586C16Rik|Slim1|Slm-1|Slm1|TG-RP135|Tg(LRRK2*R1441G)135Cjli|mSLM-1	KH domain containing, RNA binding, signal transduction associated 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-6706349-4	chr2	6706286	6706486	+	643.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110232, intron 4 of 15)	RSINE1|SINE|B4	15276.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-145312025-2	chr6	145311925	145312125	+	597.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	61473.0	NR_045598	100039495.0	Mm.121014	NR_045598	ENSMUSG00000086013	Gm15706	-	predicted gene 15706	ncRNA	-1.24864081166954	-1.05697584198546	-1.2323168292158	-1.24092358447484	-0.973582218360407	-1.0547052647222	-1.22994489092327	-1.23938297939847	1.26180024232165	0.681544385077103	1
Merged-chr2-58752401-4	chr2	58752294	58752494	+	874.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289660, intron 1 of 7)	intron (NM_001289660, intron 1 of 7)	-2790.0	NM_001289659	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-62646782-4	chr11	62646681	62646881	+	925.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198861, intron 1 of 3)	intron (NM_198861, intron 1 of 3)	1268.0	NM_001357955	192976.0	Mm.339972	NM_198861	ENSMUSG00000046417	Lrrc75a	Fam211a	leucine rich repeat containing 75A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-22151024-6	chr9	22150853	22151053	+	903.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13D3|LTR|ERVK	-5893.0	NM_001082532	66268.0	Mm.28924	NM_025457	ENSMUSG00000010607	Pigyl	1810008A14Rik|PIG-Y|Pigy	phosphatidylinositol glycan anchor biosynthesis, class Y-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-19418041-4	chr13	19417907	19418107	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22194.0	NM_001347485	76205.0	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128809106-2	chr2	128809006	128809206	+	657.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-9197.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-95828209-4	chr15	95828116	95828316	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155276, intron 1 of 1)	intron (NR_155276, intron 1 of 1)	1856.0	NR_155277	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120491312-2	chr11	120491212	120491412	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013770)	promoter-TSS (NM_013770)	-525.0	NM_013770	27376.0	Mm.3991	NM_013770	ENSMUSG00000025792	Slc25a10	Dic	solute carrier family 25 (mitochondrial carrier, dicarboxylate transporter), member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-96921221-4	chr5	96921129	96921329	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_131152)	promoter-TSS (NR_131152)	-43.0	NR_131152	666266.0	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	4.79383923372017	4.95424036238391	5.07895749665599	4.6791568107738	5.41253543147292	4.84729783194476	4.79231841054953	5.31724714404668	0.297027798465655	0.361228916190432	0.856978223659267
Merged-chr8-119443008-2	chr8	119442908	119443108	+	945.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_027950, exon 4 of 6)	exon (NM_027950, exon 4 of 6)	-3711.0	NM_054095	117148.0	Mm.356184	NM_054095	ENSMUSG00000031837	Necab2	Efcbp2	N-terminal EF-hand calcium binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-4371786-2	chr8	4371686	4371886	+	554.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22198.0	NM_009138	20300.0	Mm.7275	NM_009138	ENSMUSG00000023235	Ccl25	A130072A22Rik|AI852536|CKb15|Scya25|TECK	chemokine (C-C motif) ligand 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6936632-1	chr19	6936532	6936732	+	781.0	f1_balb.idr	Intergenic	B2_Mm1t|SINE|B2	-2117.0	NM_008431	16528.0	Mm.12894	NM_008431	ENSMUSG00000024957	Kcnk4	Catsperz|MLZ-622|TRAAK|TRAAKt|Tex40	potassium channel, subfamily K, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124075073-4	chr5	124074974	124075174	+	987.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019875, intron 9 of 11)	intron (NM_019875, intron 9 of 11)	20724.0	NM_019875	56325.0	Mm.254839	NM_019875	ENSMUSG00000029408	Abcb9	TAPL|mKIAA1520	ATP-binding cassette, sub-family B (MDR/TAP), member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-28537718-2	chr2	28537618	28537818	+	595.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145836, intron 1 of 17)	intron (NM_001145836, intron 1 of 17)	4254.0	NM_001145836	19730.0	Mm.5236	NM_009058	ENSMUSG00000026821	Ralgds	Gnds|Rgds|mKIAA1308	ral guanine nucleotide dissociation stimulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-30546942-4	chr6	30546849	30547049	+	893.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024698, intron 4 of 10)	intron (NM_001024698, intron 4 of 10)	5307.0	NM_001024698	232680.0	Mm.268855	NM_001024698	ENSMUSG00000071553	Cpa2	-	carboxypeptidase A2, pancreatic	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-169061688-2	chr2	169061574	169061774	+	688.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	83405.0	NR_040326	75508.0	Mm.271256	NR_040326	ENSMUSG00000086348	1700017J07Rik	-	RIKEN cDNA 1700017J07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-93464412-1	chr10	93464312	93464512	+	568.0	f0_balb.idr	intron (NM_008517, intron 3 of 18)	intron (NM_008517, intron 3 of 18)	11016.0	NM_008517	16993.0	Mm.271071	NM_008517	ENSMUSG00000015889	Lta4h	-	leukotriene A4 hydrolase	protein-coding	0.667400031573602	0.734051600149014	0.712982673661528	0.696234206716239	2.15518858156002	0.738706321350448	2.07978049503428	2.21892787908112	5.46949622616753	0.000344656638581186	0.00820946725314045
Merged-chr14-77794659-4	chr14	77794573	77794773	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001033440, exon 3 of 3)	3' UTR (NM_001033440, exon 3 of 3)	4295.0	NM_001033440	380920.0	Mm.297771	NM_001033440	ENSMUSG00000075512	Gm1587	-	predicted gene 1587	protein-coding	3.60201246039875	4.01968064958607	2.86690240499921	3.50793487190002	3.80265307801396	4.04738114813065	3.78662801567737	3.44419933652185	0.332854296816932	0.522100114616248	0.947836760490745
Merged-chr2-103719099-3	chr2	103718996	103719196	+	742.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_178890)	TTS (NM_178890)	42174.0	NM_153126	98956.0	Mm.288005	NM_153126	ENSMUSG00000027185	Nat10	AI429152	N-acetyltransferase 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-40368094-1	chr11	40367994	40368194	+	822.0	f0_balb.idr	Intergenic	Intergenic	324588.0	NM_134017	108645.0	Mm.293771	NM_134017	ENSMUSG00000042032	Mat2b	1110064C04Rik|2410018D16Rik|AI182287|AU022853|MAT-II|MATIIbeta|TGR	methionine adenosyltransferase II, beta	protein-coding	1.3044127041701	0.548488394014462	0.53844728745864	0.530624612043506	1.23868914505985	1.09707836936488	1.17347310611721	0.531996150377174	1.1581652398809	0.499572886704178	0.937813001148962
Merged-chr2-119743746-2	chr2	119743691	119743891	+	699.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146125, intron 1 of 6)	intron (NM_146125, intron 1 of 6)	1454.0	NM_146125	228550.0	Mm.65337	NM_146125	ENSMUSG00000027296	Itpka	-	inositol 1,4,5-trisphosphate 3-kinase A	protein-coding	0.592356228478611	0.45560857894431	0.445366422555749	1.33673506931366	1.07978206727876	0.457898462411364	0.447637406432217	1.34683674661776	0.54688949798305	0.756655233806748	0.998431161219273
Merged-chr6-115712334-3	chr6	115712230	115712430	+	746.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35695.0	NM_029780	110157.0	Mm.184163	NM_029780	ENSMUSG00000000441	Raf1	6430402F14Rik|AA990557|BB129353|Craf1|D830050J10Rik|Raf-1|c-Raf|cRaf|v-Raf	v-raf-leukemia viral oncogene 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-48924016-3	chr11	48923906	48924106	+	695.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045540, intron 1 of 2)	intron (NM_001045540, intron 1 of 2)	3176.0	NM_001045540	620913.0	Mm.452174	NM_001045540	ENSMUSG00000048852	Gm12185	Irgb2b1	predicted gene 12185	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-39006300-4	chr8	39006203	39006403	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357305, intron 1 of 8)	CpG	458.0	NM_001357306	80286.0	Mm.272722	NM_030254	ENSMUSG00000039530	Tusc3	AU022242|BC003311|N33	tumor suppressor candidate 3	protein-coding	5.89760886726588	6.51286139468752	5.34973584962276	5.91220346522767	5.10501601582837	6.58024188185651	5.75560267281662	5.2070507594095	-0.213697652759391	0.529244424596757	0.949537624311418
Merged-chr10-83343373-4	chr10	83343265	83343465	+	971.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-5548.0	NM_177388	338365.0	Mm.67073	NM_177388	ENSMUSG00000034591	Slc41a2	A230035L05Rik|SLC41A1-L1	solute carrier family 41, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-59969361-3	chr2	59969274	59969474	+	846.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001001182, exon 7 of 36)	exon (NM_001001182, exon 7 of 36)	-86768.0	NM_028118	72137.0	Mm.288734	NM_028118	ENSMUSG00000026988	Wdsub1	1700048E19Rik|2610014F08Rik	WD repeat, SAM and U-box domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32211997-2	chr2	32211897	32212097	+	712.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172661, intron 14 of 29)	intron (NM_172661, intron 14 of 29)	-24686.0	NM_145145	99011.0	Mm.31192	NM_145145	ENSMUSG00000039254	Pomt1	AI505244	protein-O-mannosyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30439771-2	chr2	30439671	30439871	+	663.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_138748, intron 8 of 9)	intron (NM_138748, intron 8 of 9)	23721.0	NM_138748	110854.0	Mm.275393	NM_138748	ENSMUSG00000039515	Ptpa	2610042B21Rik|C77440|N28142|PR53|Ppp2r4	protein phosphatase 2 protein activator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-158065012-1	chr2	158064912	158065112	+	541.0	f1_balb.idr	intron (NM_027434, intron 6 of 6)	intron (NM_027434, intron 6 of 6)	26785.0	NR_040609	72340.0	Mm.443395	NR_040609	ENSMUSG00000100860	2010009K17Rik	-	RIKEN cDNA 2010009K17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-60161129-4	chr19	60161030	60161230	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_026942, exon 5 of 5)	non-coding (NR_026942, exon 5 of 5)	16455.0	NR_026942	107376.0	Mm.245813	NR_026942	ENSMUSG00000053117	E330013P04Rik	9930018I18Rik|AW492152	RIKEN cDNA E330013P04 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101813418-2	chr11	101813318	101813518	+	851.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28108.0	NM_001316365	18612.0	Mm.5025	NM_008815	ENSMUSG00000017724	Etv4	AW414408|Pea-3|Pea3	ets variant 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75535230-4	chr11	75535186	75535386	+	662.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199284, intron 2 of 13)	intron (NM_001199284, intron 2 of 13)	3174.0	NM_001199283	215113.0	Mm.11186	NM_173388	ENSMUSG00000038178	Slc43a2	7630402D21Rik|BC042513|Lat4	solute carrier family 43, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-83695512-4	chr8	83695435	83695635	+	999.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177262, intron 1 of 21)	(CA)n|Simple_repeat|Simple_repeat	-1474.0	NM_001199593	320795.0	Mm.213000	NM_177262	ENSMUSG00000057672	Pkn1	DBK|F730027O18Rik|PAK1|PRK1|Pkn|Prkcl1|Stk3	protein kinase N1	protein-coding	5.12371012806276	5.37252806155243	5.79403775786056	5.7268134938166	5.04486618615296	5.18081724823732	5.38112429337916	5.85332103105519	-0.14469481489356	0.630724322836773	0.981465575333797
Merged-chr17-8199246-4	chr17	8199136	8199336	+	943.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33718.0	NM_201230	75296.0	Mm.227250	NM_201230	ENSMUSG00000069135	Fgfr1op	4930553O10Rik|FOP	Fgfr1 oncogene partner	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90904711-4	chr2	90904556	90904756	+	991.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311116)	promoter-TSS (NM_001311116)	65.0	NM_026688	68349.0	Mm.30113	NM_026688	ENSMUSG00000005510	Ndufs3	0610010M09Rik|CI-30kD	NADH dehydrogenase (ubiquinone) Fe-S protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91256923-3	chr2	91256861	91257061	+	797.488892	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028733)	promoter-TSS (NM_028733)	148.0	NM_001289678	80708.0	Mm.236650	NM_028733	ENSMUSG00000027257	Pacsin3	4921507A02Rik|6330413E15Rik|AW413130	protein kinase C and casein kinase substrate in neurons 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-135195073-2	chr6	135194969	135195169	+	696.666626	f0_c57.idr|f1_c57bl6.idr	TTS (NR_040296)	TTS (NR_040296)	-2918.0	NM_001362110	74525.0	Mm.34182	NM_028982	ENSMUSG00000030207	Fam234b	8430419L09Rik|mKIAA1467	family with sequence similarity 234, member B	protein-coding	2.09946339231381	3.59964972815605	2.77451316477948	3.21422800635084	1.13576097224016	2.68390754503483	1.24357698433507	1.4899700999237	-2.51971633714174	0.00899347299049146	0.10097038890198
Merged-chr7-101838353-2	chr7	101838253	101838453	+	924.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001122739)	promoter-TSS (NM_001122739)	-127.0	NM_010567	16332.0	Mm.476000	NM_010567	ENSMUSG00000032737	Inppl1	51C|SHIP2	inositol polyphosphate phosphatase-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-99278454-1	chr5	99278354	99278554	+	726.0	f0_balb.idr	Intergenic	Intergenic	-25527.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-19214777-4	chr3	19214699	19214899	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356295, intron 4 of 7)	intron (NM_001356295, intron 4 of 7)	26504.0	NM_001356295	67472.0	Mm.45125	NM_026182	ENSMUSG00000027601	Mtfr1	1300002C08Rik|1700080D04Rik|2810026O10Rik|4930579E05Rik|Chppr|Fam54a2	mitochondrial fission regulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-53968608-4	chr6	53968506	53968706	+	954.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027749, intron 2 of 12)	intron (NM_027749, intron 2 of 12)	10067.0	NM_027749	71287.0	Mm.158654	NM_027749	ENSMUSG00000052955	Cpvl	4933436L16Rik|HVLP	carboxypeptidase, vitellogenic-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-97379521-2	chr15	97379421	97379621	+	815.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172293, intron 5 of 5)	intron (NM_172293, intron 5 of 5)	-132234.0	NM_001164602	105827.0	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43558077-2	chr4	43557977	43558177	+	633.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_011602, intron 1 of 56)	intron (NM_011602, intron 1 of 56)	4506.0	NM_011602	21894.0	Mm.208601	NM_011602	ENSMUSG00000028465	Tln1	Tln	talin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-93809264-1	chr1	93809164	93809364	+	552.0	f1_balb.idr	intron (NM_025454, intron 2 of 7)	intron (NM_025454, intron 2 of 7)	5299.0	NM_025454	66262.0	Mm.64065	NM_025454	ENSMUSG00000026283	Ing5	1700001C14Rik|1700027H23Rik|1810018M11Rik|AI225768	inhibitor of growth family, member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99116563-4	chr15	99116454	99116654	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10291.0	NM_139140	72572.0	Mm.276650	NM_139140	ENSMUSG00000051934	Spats2	2700012F11Rik|59kDa|Scr59|p59	spermatogenesis associated, serine-rich 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-129098040-4	chr6	129097949	129098149	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153506, intron 2 of 4)	intron (NM_153506, intron 2 of 4)	2854.0	NM_153506	232409.0	Mm.30870	NM_153506	ENSMUSG00000030155	Clec2e	Clra|clr-a	C-type lectin domain family 2, member e	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-107547795-6	chr11	107547736	107547936	+	862.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198298)	promoter-TSS (NM_198298)	-124.0	NM_198298	78455.0	Mm.272047	NM_198298	ENSMUSG00000020721	Helz	3110078M01Rik|9430093I07Rik|9630002H22Rik|AI851979|DRHC	helicase with zinc finger domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-92485735-2	chr13	92485635	92485835	+	688.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1704.0	NM_001163627	73942.0	Mm.85935	NM_001163627	ENSMUSG00000034334	Fam151b	4930405M20Rik	family with sequence similarity 151, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125046861-4	chr6	125046758	125046958	+	942.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133345, intron 2 of 7)	intron (NM_133345, intron 2 of 7)	2995.0	NR_130997	78202.0	Mm.445941	NR_130997	ENSMUSG00000108034	4930557K07Rik	Gm43989	RIKEN cDNA 4930557K07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100282829-2	chr11	100282729	100282929	+	787.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12958.0	NM_212483	68239.0	Mm.158190	NM_212483	ENSMUSG00000053654	Krt42	2410039E07Rik|K17n|Ka22|ecat6	keratin 42	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-122104638-3	chr3	122104544	122104744	+	902.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007378, intron 13 of 49)	intron (NM_007378, intron 13 of 49)	60184.0	NM_007378	11304.0	Mm.3918	NM_007378	ENSMUSG00000028125	Abca4	AW050280|Abc10|Abcr|D430003I15Rik|RmP	ATP-binding cassette, sub-family A (ABC1), member 4	protein-coding	-0.07825766246471	0.169866835009557	0.773810236571029	-0.231596590733366	-0.238072722279429	-0.219872013308136	-0.225750246164008	-0.230799749448807	-3.95573048069993	0.0810187873442649	1
Merged-chr7-101563207-3	chr7	101563111	101563311	+	759.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13D3|LTR|ERVK	-2346.0	NR_033804	11871.0	Mm.439746	NM_007490	ENSMUSG00000092517	Art2a-ps	ARTC2|Art2a|Ly92a|Rt-6|Rt6|Rt6-1	ADP-ribosyltransferase 2a, pseudogene	protein-coding	0.0527296636573748	0.401161498189665	0.468852825715777	0.0791044482077239	0.0566686785338265	-0.067505401457599	-0.0721410067668458	-0.0760833721776658	-2.94506992090964	0.154487663724502	1
Merged-chr14-120276504-4	chr14	120276411	120276611	+	905.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360380, intron 1 of 7)	intron (NM_001360380, intron 1 of 7)	842.0	NM_001360380	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-41300481-3	chr12	41300377	41300577	+	941.3666380000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053122, intron 4 of 6)	intron (NM_053122, intron 4 of 6)	185580.0	NM_001271708	16981.0	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-76647289-2	chr2	76647189	76647389	+	735.466675	f1_balb.idr|f1_c57bl6.idr	exon (NM_011871, exon 2 of 8)	exon (NM_011871, exon 2 of 8)	705.0	NM_011871	23992.0	Mm.277250	NM_011871	ENSMUSG00000002731	Prkra	AV120107|PRK|Pact|RAX|lear	protein kinase, interferon inducible double stranded RNA dependent activator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-129400094-4	chr6	129399994	129400194	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_019985, exon 2 of 6)	exon (NM_019985, exon 2 of 6)	2797.0	NM_001204239	56760.0	Mm.30700	NM_019985	ENSMUSG00000030159	Clec1b	1810061I13Rik|Clec-2|Clec2	C-type lectin domain family 1, member b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-11589595-4	chr2	11589508	11589708	+	930.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152824, intron 7 of 11)	intron (NM_152824, intron 7 of 11)	13591.0	NM_152824	76938.0	Mm.182769	NM_152824	ENSMUSG00000037197	Rbm17	2700027J02Rik	RNA binding motif protein 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-16021313-3	chr3	16021212	16021412	+	873.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13D5|LTR|ERVK	-14980.0	NM_001081687	381484.0	Mm.217376	NM_001081687	ENSMUSG00000078780	Gm5150	-	predicted gene 5150	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-145699853-4	chr2	145699742	145699942	+	995.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1353.0	NR_033220	408057.0	Mm.486711	NR_033220	ENSMUSG00000087594	BC039771	-	cDNA sequence BC039771	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-37559796-2	chr13	37559696	37559896	+	629.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	214451.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-79335602-2	chr15	79335502	79335702	+	571.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7231.0	NM_001199023	53357.0	Mm.155620	NM_016915	ENSMUSG00000042632	Pla2g6	BB112799|PNPLA9|iPLA(2)beta|iPLA2|iPLA2beta	phospholipase A2, group VI	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-96640282-2	chr15	96640182	96640382	+	821.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166458, intron 1 of 15)	intron (NM_001166458, intron 1 of 15)	1680.0	NM_134086	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35193182-4	chr17	35193086	35193286	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1321.0	NM_008518	16994.0	Mm.1715	NM_008518	ENSMUSG00000024399	Ltb	AI662801|LTbeta|Tnfc|Tnfsf3|Tnlg1c|p33	lymphotoxin B	protein-coding	3.96600311906524	3.69566515754443	4.44190433187124	3.01384720217185	4.65672136659264	4.88121747722392	4.13973199915779	4.34690967564548	0.871592473149952	0.0576262150850301	0.355313252702313
Merged-chr9-114500361-1	chr9	114500261	114500461	+	771.0	f1_balb.idr	Intergenic	Intergenic	-3817.0	NM_009916	12773.0	Mm.1337	NM_009916	ENSMUSG00000047898	Ccr4	C-C CKR-4|CHEMR1|Cmkbr4|LESTR|Sdf1r	chemokine (C-C motif) receptor 4	protein-coding	2.3324984662148	2.77687104083302	2.02889803802086	2.46897088688457	2.05576801985197	3.61744958329878	3.73470222946291	3.18843874991633	1.55964471116789	0.0344540158864512	0.262296499115254
Merged-chr10-95703213-7	chr10	95703113	95703313	+	967.8639529999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-139067.0	NM_001358996	71207.0	Mm.24397	NM_027722	ENSMUSG00000020029	Nudt4	4933436C10Rik|DIPP-2|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P	nudix (nucleoside diphosphate linked moiety X)-type motif 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-17872407-2	chr17	17872294	17872494	+	707.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	11545.0	NM_013521	14293.0	Mm.56951	NM_013521	ENSMUSG00000045551	Fpr1	FPR|LXA4R|fMLF-R	formyl peptide receptor 1	protein-coding	3.66396964212408	3.48097646218315	2.85136353620617	1.90272249642859	3.41265033748242	2.83843294432094	3.68843870771768	3.70280328091787	0.498096930664291	0.451723860598359	0.918146120638574
Merged-chr17-31563694-2	chr17	31563594	31563794	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1079.0	NR_027493	18771.0	Mm.259295	NM_016670	ENSMUSG00000006705	Pknox1	D17Wsu76e|PREP1	Pbx/knotted 1 homeobox	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83593647-4	chr11	83593547	83593747	+	903.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009139)	promoter-TSS (NM_009139)	-560.0	NM_009139	20305.0	Mm.137	NM_009139	ENSMUSG00000018927	Ccl6	MRP-1|Scya6|c10	chemokine (C-C motif) ligand 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-76497143-2	chr11	76497043	76497243	+	655.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198018, intron 1 of 21)	intron (NM_198018, intron 1 of 21)	-2648.0	NM_001346670	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-59121236-4	chr2	59121145	59121345	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362394, intron 1 of 13)	MTE2a|LTR|ERVL-MaLR	39438.0	NM_001362393	227933.0	Mm.330234	NM_177650	ENSMUSG00000036641	Ccdc148	5830402J09|Gm38473	coiled-coil domain containing 148	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-101842715-2	chr5	101842615	101842815	+	603.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 66 of 66)	intron (NM_172882, intron 66 of 66)	77585.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-66260784-2	chr14	66260684	66260884	+	585.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	20268.0	NM_001162366	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-97942742-4	chr15	97942666	97942866	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-21463.0	NM_001356508	380967.0	Mm.196630	NM_201359	ENSMUSG00000052369	Tmem106c	AI046681|BC046621|D15Ertd405e	transmembrane protein 106C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-132264138-4	chr2	132264065	132264265	+	870.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291040, intron 1 of 3)	intron (NM_001291040, intron 1 of 3)	1017.0	NM_138651	110911.0	Mm.284503	NM_138651	ENSMUSG00000058793	Cds2	5730450N06Rik|5730460C18Rik|AI854580|D2Wsu127e	CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-12195309-2	chr15	12195209	12195409	+	716.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9719.0	NM_001356498	268783.0	Mm.54460	NM_172958	ENSMUSG00000039458	Mtmr12	3Pap|4932703C11|C730015A02Rik|Pip3ap|mKIAA1682	myotubularin related protein 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-66091547-2	chr5	66091447	66091647	+	997.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_139065, intron 2 of 6)	intron (NM_139065, intron 2 of 6)	6632.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-83333273-1	chr8	83333173	83333373	+	605.5	f0_balb.idr	promoter-TSS (NM_001170691)	promoter-TSS (NM_001170691)	-787.0	NM_178736	244548.0	Mm.38762	NM_178736	ENSMUSG00000035151	Elmod2	9830169G11Rik	ELMO/CED-12 domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-157737347-4	chr2	157737225	157737425	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025680)	promoter-TSS (NM_025680)	-76.0	NM_025680	66642.0	Mm.45193	NM_025680	ENSMUSG00000027649	Ctnnbl1	5730471K09Rik|NAP|NYD-SP19|P14L	catenin, beta like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-87359488-4	chr3	87359388	87359588	+	946.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009690, intron 1 of 5)	intron (NM_009690, intron 1 of 5)	1607.0	NM_009690	11801.0	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	3.38354981036913	2.29468528053345	2.20262361699219	3.63930869697196	4.78520821307643	3.02774255886051	3.54639530800921	4.01082916306943	1.43270640996311	0.027831171094571	0.225195509290189
Merged-chr7-126770987-4	chr7	126770893	126771093	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_024228, exon 8 of 10)	exon (NM_024228, exon 8 of 10)	4579.0	NM_024228	68616.0	Mm.246881	NM_024228	ENSMUSG00000030703	Gdpd3	1110015E22Rik	glycerophosphodiester phosphodiesterase domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-9828162-3	chr18	9828058	9828258	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130449, intron 2 of 9)	intron (NM_130449, intron 2 of 9)	120510.0	NM_130449	140792.0	Mm.218571	NM_130449	ENSMUSG00000036103	Colec12	CL-P1|SRCL|Scara4	collectin sub-family member 12	protein-coding	1.65015560212621	2.91247231419748	2.80139940326475	1.47865684175531	4.46381967846743	3.95724200106789	4.20474074652272	3.51041528276733	2.79287802219379	3.62531262903269e-05	0.00135362554740044
Merged-chr7-12883173-2	chr7	12883073	12883273	+	579.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153802, intron 1 of 3)	MLT1D|LTR|ERVL-MaLR	1995.0	NM_153802	243833.0	Mm.293823	NM_153802	ENSMUSG00000060397	Zfp128	9630016P15Rik|Znf8|mZnf8	zinc finger protein 128	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-106568701-1	chr3	106568601	106568801	+	708.0	f0_balb.idr	intron (NM_001025582, intron 5 of 6)	Lx7|LINE|L1	-20899.0	NM_133869	99712.0	Mm.429443	NM_133869	ENSMUSG00000040774	Cept1	9930118K05Rik|mCEPT1	choline/ethanolaminephosphotransferase 1	protein-coding	-0.539072095141396	-1.17607782048307	-1.18720726126045	-1.19634931528472	-1.20196491063698	-1.17366602423904	-1.18468779981884	-1.19471289198531	-2.68787187143179	0.435473844436726	1
Merged-chr14-30881473-3	chr14	30881374	30881574	+	605.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_181390, exon 3 of 3)	3' UTR (NM_181390, exon 3 of 3)	2217.0	NM_181390	66175.0	Mm.220895	NM_181390	ENSMUSG00000042485	Mustn1	1110028G01Rik|Mustang	musculoskeletal, embryonic nuclear protein 1	protein-coding	1.69755331557092	1.65156273412255	1.06221504414443	1.98085781757994	1.89133584132245	1.6635146221207	1.28066946433295	1.56229822083584	-0.0816917507404711	0.94278799717137	0.998431161219273
Merged-chr2-32509467-4	chr2	32509375	32509575	+	998.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25884.0	NM_153560	98952.0	Mm.4065	NM_153560	ENSMUSG00000039157	Fam102a	AI426465|C230093N12Rik|Eeig1	family with sequence similarity 102, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141102194-2	chr4	141102094	141102294	+	640.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177867, intron 7 of 14)	intron (NM_177867, intron 7 of 14)	13849.0	NM_177867	329972.0	Mm.247201	NM_177867	ENSMUSG00000045004	Spata21	4933414G08	spermatogenesis associated 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69074749-2	chr11	69074649	69074849	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	1323.0	NR_028566	100216530.0	Mm.453052	NR_028566	ENSMUSG00000064899	Snord118	MBI-34	small nucleolar RNA, C/D box 118	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-127084825-2	chr2	127084725	127084925	+	812.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_026678, intron 3 of 7)	intron (NM_026678, intron 3 of 7)	14168.0	NM_026678	109778.0	Mm.22028	NM_026678	ENSMUSG00000001999	Blvra	0610006A11Rik|2500001N03Rik|Blvr	biliverdin reductase A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-36623428-2	chr5	36623328	36623528	+	680.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081232, intron 3 of 8)	intron (NM_001081232, intron 3 of 8)	-37202.0	NM_001113362	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-105116885-2	chr12	105116785	105116985	+	550.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-30134.0	NM_013775	27381.0	Mm.103653	NM_013775	ENSMUSG00000060863	Tcl1b2	-	T cell leukemia/lymphoma 1B, 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33077269-4	chr16	33077176	33077376	+	890.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172823, intron 6 of 16)	intron (NM_172823, intron 6 of 16)	14755.0	NM_172823	239833.0	Mm.131951	NM_172823	ENSMUSG00000022802	Lmln	5330415H22Rik|AI465495	leishmanolysin-like (metallopeptidase M8 family)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-10416239-4	chr16	10416108	10416308	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011955, intron 3 of 10)	intron (NM_011955, intron 3 of 10)	4270.0	NM_011955	26425.0	Mm.29037	NM_011955	ENSMUSG00000022503	Nubp1	-	nucleotide binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-173978970-3	chr1	173978869	173979069	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008327, intron 1 of 6)	Lx3_Mus|LINE|L1	3875.0	NM_008327	26388.0	Mm.218770	NM_008327	ENSMUSG00000026535	Ifi202b	Ifbip-1|Ifi202|Ifi202a|p202	interferon activated gene 202B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-66832630-4	chr9	66832519	66832719	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026674, intron 2 of 5)	intron (NM_026674, intron 2 of 5)	2087.0	NM_026674	68318.0	Mm.284229	NM_026674	ENSMUSG00000053040	Aph1c	0610008A10Rik|APH-1b|Aph1b	aph1 homolog C, gamma secretase subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-93962370-4	chr10	93962267	93962467	+	955.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001304572, exon 12 of 12)	3' UTR (NM_001304572, exon 12 of 12)	1496.0	NR_029764	723908.0		NR_029764	ENSMUSG00000065607	Mir331	Mirn331|mmu-mir-331	microRNA 331	ncRNA	5.26335875968845	5.82292410733079	4.63670230679192	5.19534077192928	4.07161802736511	4.22932105410443	2.88877023492548	4.38684046212661	-1.58119616736603	0.000165283580603592	0.00464057503919321
Merged-chr1-135620042-4	chr1	135619943	135620143	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22267.0	NR_151586	215714.0	Mm.472859	NM_175447		Gm4793	EG215714	predicted gene 4793	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-100669565-4	chr15	100669476	100669676	+	973.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001270537)	promoter-TSS (NM_001270537)	-76.0	NM_001270537	668218.0	Mm.451225	NM_001270537	ENSMUSG00000098112	Bin2	-	bridging integrator 2	protein-coding	2.29145716528035	3.30486820903169	3.67872809865835	2.42185224006373	2.73380669042013	2.60557833908613	1.77987129027476	2.43492799602364	-1.15791184316478	0.135586427799238	0.575099915414303
Merged-chr9-65038908-3	chr9	65038829	65039029	+	636.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028906, intron 3 of 20)	intron (NM_028906, intron 3 of 20)	6471.0	NM_028906	74388.0	Mm.202749	NM_028906	ENSMUSG00000032393	Dpp8	2310004I03Rik|4932434F09Rik|AI666706|DPP VIII	dipeptidylpeptidase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-26718438-2	chr19	26718338	26718538	+	543.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011416, intron 26 of 32)	intron (NM_011416, intron 26 of 32)	-29727.0	NM_001347439	67155.0	Mm.491146	NM_011416	ENSMUSG00000024921	Smarca2	2610209L14Rik|SNF2alpha|Snf2l2|brahma|brm	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-66234849-2	chr14	66234749	66234949	+	584.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 1 of 30)	MIRb|SINE|MIR	-21025.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-87433132-4	chr11	87433035	87433235	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199293, intron 1 of 30)	ORR1C2|LTR|ERVL-MaLR	5544.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-119618590-4	chr2	119618488	119618688	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001042653)	promoter-TSS (NM_001042653)	-83.0	NM_001042653	70645.0	Mm.246412	NM_001042653	ENSMUSG00000072980	Oip5	5730547N13Rik|Lint-25|Ms18b	Opa interacting protein 5	protein-coding	3.89734610802888	4.22876416255998	4.02805115854861	4.52926208556517	4.3117904305941	2.76152828205965	4.54894554802631	4.32936565518936	-0.0538680540236706	0.911714212324505	0.998431161219273
Merged-chr12-54402809-2	chr12	54402709	54402909	+	625.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11491.0	NR_033689	665239.0	Mm.26856	NR_033689		Gm7550	EG665239|Gm666	predicted gene 7550	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-14017904-4	chr10	14017794	14017994	+	960.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358783, intron 2 of 12)	intron (NM_001358783, intron 2 of 12)	51515.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-112622709-2	chr12	112622609	112622809	+	914.0714109999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_007421, intron 1 of 12)	intron (NM_007421, intron 1 of 12)	2662.0	NM_007421	11565.0	Mm.3440	NM_007421	ENSMUSG00000011148	Adssl1	AI528595|Adss|Adss1	adenylosuccinate synthetase like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-43405302-4	chr16	43405207	43405407	+	790.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181058, intron 2 of 6)	MIR|SINE|MIR	14889.0	NR_046026	626693.0	Mm.447083	NR_046026	ENSMUSG00000085499	Gm15713	-	predicted gene 15713	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-84712976-2	chr18	84712876	84713076	+	587.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7168.0	NM_173770	240479.0	Mm.472378	NM_173770	ENSMUSG00000047992	Fam69c	B230399E16Rik	family with sequence similarity 69, member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122882629-2	chr8	122882529	122882729	+	719.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34255.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-21213978-4	chr5	21213880	21214080	+	971.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153365, intron 5 of 26)	intron (NR_153365, intron 5 of 26)	27713.0	NM_001359877	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-69199929-6	chr17	69199829	69200029	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355736, intron 1 of 21)	intron (NM_001355736, intron 1 of 21)	40573.0	NM_001355735	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	2.79011687596934	2.42887756610923	2.61891068049836	1.43869541369408	3.10262250609399	3.60020084348501	3.05375207981601	2.12369540409144	1.21875596476529	0.128444685277465	0.560528370741642
Merged-chr2-165782391-2	chr2	165782291	165782491	+	687.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	75782.0	NM_001252585	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-137465210-2	chr6	137465110	137465310	+	687.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001164401)	TTS (NM_001164401)	54489.0	NM_001164403	19277.0	Mm.186361	NM_011216	ENSMUSG00000030223	Ptpro	D28|GLEPP1|PTPBK|PTPROt|PTPU2|PTPoc|PTPphi|Ptpn15|R-PTP-O	protein tyrosine phosphatase, receptor type, O	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-84623482-2	chr2	84623382	84623582	+	903.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355067, intron 1 of 15)	intron (NM_001355067, intron 1 of 15)	25998.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-52064574-3	chr6	52064474	52064674	+	727.783325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38375.0	NR_110440	102635415.0	Mm.333063	NR_110440	ENSMUSG00000085412	Halr1	Gm15055|Haunt|Linchoxa1|linc-Evx1|linc-Hoxa1|linc1547	Hoxa adjacent long noncoding RNA 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-103468295-2	chr14	103468195	103468395	+	776.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45046.0	NM_022886	64929.0	Mm.244003	NM_022886	ENSMUSG00000022123	Scel	9230114I02Rik	sciellin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96594199-4	chr3	96594101	96594301	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001293701)	promoter-TSS (NM_001293701)	-20.0	NM_001293701	69870.0	Mm.292739	NM_027241	ENSMUSG00000028104	Polr3gl	2010003I19Rik	polymerase (RNA) III (DNA directed) polypeptide G like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24170888-4	chr17	24170806	24171006	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1228.0	NM_001361531	11984.0	Mm.30155	NM_009729	ENSMUSG00000024121	Atp6v0c	Atp6c|Atp6c2|Atp6l|Atpl|Atpl-rs1|PL16|VATL|Vma3	ATPase, H+ transporting, lysosomal V0 subunit C	protein-coding	4.93819701783064	4.73071090625972	5.02481580832639	5.39592409363517	4.74126365233359	5.17446378701351	5.48031353775087	5.3660464911718	0.195230238958246	0.543104255128278	0.955286497618918
Merged-chr12-28635935-4	chr12	28635807	28636007	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011300)	promoter-TSS (NM_011300)	46.0	NM_011300	20115.0	Mm.279839	NM_011300	ENSMUSG00000061477	Rps7	Mtu|Rps7A|S7	ribosomal protein S7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-21439598-1	chr19	21439498	21439698	+	724.0	f0_balb.idr	intron (NM_010266, intron 1 of 13)	intron (NM_010266, intron 1 of 13)	33063.0	NM_010266	14544.0	Mm.45054	NM_010266	ENSMUSG00000058624	Gda	AU015411|AW047581|GAH	guanine deaminase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-101945907-2	chr5	101945790	101945990	+	729.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 10 of 66)	L1M1|LINE|L1	124031.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	1.32158545978433	0.769396892239563	0.541225589633277	0.532971742017717	1.06703276463288	0.775467905187847	0.543569579846628	1.51050723799417	0.835345133163704	0.607106365273003	0.974576632476413
Merged-chr12-4086274-2	chr12	4086174	4086374	+	728.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_153082, intron 2 of 6)	intron (NM_153082, intron 2 of 6)	3700.0	NM_153082	217378.0	Mm.271656	NM_153082	ENSMUSG00000020657	Dnajc27	AI639580|C330021A05Rik|Rabj|Rbj	DnaJ heat shock protein family (Hsp40) member C27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-138291606-1	chr1	138291506	138291706	+	760.0	f0_balb.idr	Intergenic	Intergenic	17868.0	NM_177397	338375.0	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-40790037-4	chr17	40789950	40790150	+	961.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001204071, intron 4 of 9)	MLT1D|LTR|ERVL-MaLR	4096.0	NM_001204071	22024.0	Mm.1296	NM_009420	ENSMUSG00000023930	Crisp2	CRISP-2|GAPDL5|Tpx-1|Tpx1	cysteine-rich secretory protein 2	protein-coding	2.31920363256109	3.15907889434833	2.51537511567146	2.64902766635005	1.79399277111929	2.49524522335646	2.74680722118227	1.87971486163172	-0.862142513616772	0.28842968503468	0.793815200967874
Merged-chr1-7394265-4	chr1	7394177	7394377	+	905.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	305357.0	NM_183028	319263.0	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118169095-2	chr11	118168995	118169195	+	791.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_001112699, exon 12 of 13)	exon (NM_001112699, exon 12 of 13)	-39876.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-6834401-2	chr17	6834301	6834501	+	692.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	IMPB_01|Satellite|Satellite	-51621.0	NM_009510	22350.0	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-11189860-2	chr2	11189760	11189960	+	679.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008859, intron 1 of 17)	intron (NM_008859, intron 1 of 17)	17478.0	NM_008859	18761.0	Mm.329993	NM_008859	ENSMUSG00000026778	Prkcq	A130035A12Rik|AW494342|PKC-0|PKC-theta|PKCtheta|Pkcq	protein kinase C, theta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84723635-2	chr8	84723535	84723735	+	672.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001297601, intron 6 of 8)	intron (NM_001297601, intron 6 of 8)	22178.0	NM_008535	17095.0	Mm.4925	NM_008535	ENSMUSG00000034041	Lyl1	Lyl-1|bHLHa18	lymphoblastomic leukemia 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-64638248-2	chr14	64638148	64638348	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	-14283.0	NM_001081177	16554.0	Mm.23611	NM_001081177	ENSMUSG00000060012	Kif13b	5330429L19Rik|6030414C01|AI429803|C130021D12Rik|GAKIN	kinesin family member 13B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-113793148-2	chr13	113793048	113793248	+	590.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1360.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-4435690-2	chr2	4435590	4435790	+	753.400024	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 2 of 23)	intron (NM_001177843, intron 2 of 23)	34714.0	NM_001177843	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90463810-2	chr2	90463710	90463910	+	763.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 6 of 23)	MIRb|SINE|MIR	15364.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-43112741-5	chr13	43112603	43112803	+	679.700012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005740, intron 8 of 12)	intron (NM_001005740, intron 8 of 12)	-10136.0	NM_001005748	218194.0	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-117048598-4	chr13	117048503	117048703	+	984.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1N2|LTR|ERVL-MaLR	-23087.0	NM_001081009	52552.0	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-77397143-1	chr10	77397043	77397243	+	773.0	f0_balb.idr	intron (NM_001024838, intron 1 of 11)	intron (NM_001024838, intron 1 of 11)	21130.0	NM_130895	110532.0	Mm.276815	NM_130895	ENSMUSG00000020262	Adarb1	1700057H01Rik|AW124433|AW558573|Adar2|BB220382|D10Bwg0447e|Red1	adenosine deaminase, RNA-specific, B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-7581298-4	chr19	7581204	7581404	+	867.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362425, intron 4 of 4)	MTEa|LTR|ERVL-MaLR	23819.0	NM_001362425	225845.0	Mm.274810	NM_139269	ENSMUSG00000060675	Pla2g16	AdPLA|C78643|HRSL3|Hrasls3|Hrev107|MLP-3	phospholipase A2, group XVI	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-116668440-4	chr4	116668355	116668555	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16781.0	NM_021473	58810.0	Mm.30085	NM_021473	ENSMUSG00000028692	Akr1a1	2610201A18Rik|Akr1a4	aldo-keto reductase family 1, member A1 (aldehyde reductase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-89941217-4	chr7	89941092	89941292	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291288)	promoter-TSS (NM_001291288)	12.0	NM_001291289	67669.0	Mm.28679	NM_026304	ENSMUSG00000062797	Hikeshi	0610007P06Rik|1110002N09Rik|l(7)6Rn|l7Rn6	heat shock protein nuclear import factor	protein-coding	-0.802415726786774	-0.787382979186797	0.23067884335587	-0.795954720465485	-0.801439689780782	-0.786221060657725	-0.791104791999366	-0.795288134095484	-4.08283921478518	0.119072665304076	1
Merged-chr7-30600150-4	chr7	30600032	30600232	+	970.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1223.0	NR_153655	58206.0	Mm.116789	NM_021397	ENSMUSG00000006310	Zbtb32	4930524C15Rik|FAXF|FAZF|PLZP|Rog|Tzfp	zinc finger and BTB domain containing 32	protein-coding	2.58444678561219	4.11556015308674	3.30855305790024	3.8802020337797	3.66235621033261	3.34532379466644	3.11642094968847	4.33009175742746	0.169735020356169	0.773204534277893	0.998431161219273
Merged-chr1-168430322-3	chr1	168430230	168430430	+	587.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183355, intron 1 of 8)	intron (NM_183355, intron 1 of 8)	1839.0	NM_001291509	18514.0	Mm.43358	NM_008783	ENSMUSG00000052534	Pbx1	2310056B04Rik|D230003C07Rik|Pbx-1	pre B cell leukemia homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81012255-2	chr15	81012155	81012355	+	791.25	f1_balb.idr|f1_c57bl6.idr	TTS (NM_134091)	TTS (NM_134091)	34490.0	NM_134091	105835.0	Mm.274943	NM_134091	ENSMUSG00000042303	Sgsm3	1810012I01Rik|AI428557|BB175482|Cip85|R75178|RUSC3|Rutbc3	small G protein signaling modulator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-66911792-4	chr10	66911679	66911879	+	801.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_138560)	TTS (NR_138560)	8605.0	NR_138560	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95650757-4	chr3	95650650	95650850	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7971.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	-0.223702720219485	-0.204168868457791	0.814478878256692	0.387283126423996	-0.222465542893003	-0.202749449238425	-0.209100720715876	-0.214568902213217	-4.03633288200961	0.0906706208698369	1
Merged-chr8-46843647-2	chr8	46843547	46843747	+	681.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_152560, intron 6 of 7)	intron (NR_152560, intron 6 of 7)	103902.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-99448957-3	chr11	99448853	99449053	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10800.0	NM_023256	66809.0	Mm.28042	NM_023256	ENSMUSG00000035775	Krt20	9030623C06Rik|Ck-20|Ck20|K20|Krt21	keratin 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-80025830-4	chr2	80025746	80025946	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355141, intron 2 of 15)	intron (NM_001355141, intron 2 of 15)	13056.0	NM_001355142	18573.0	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding	3.90193946211139	3.91207403582089	3.63636999083321	3.45476850233169	3.9800560662962	3.51426617828705	3.81483849101424	3.55388587978297	-0.00706671000180484	0.988396681198356	0.998431161219273
Merged-chr5-145199119-1	chr5	145199019	145199219	+	797.0	f1_balb.idr	intron (NM_023322, intron 1 of 2)	MTEa|LTR|ERVL-MaLR	2763.0	NM_023322	67235.0	Mm.432480	NM_023322	ENSMUSG00000029627	Zkscan14	2310046C23Rik|2810437E14Rik|Zfp99|Znf394	zinc finger with KRAB and SCAN domains 14	protein-coding	0.588179832520654	0.996580144814359	0.4454252585734	0.77790132875857	0.427339101744037	1.00717493059526	1.38542858482836	0.439284482009416	0.848000189415254	0.61462034446921	1
Merged-chr13-17805365-4	chr13	17805274	17805474	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081058)	promoter-TSS (NM_001081058)	-277.0	NM_027118	69562.0	Mm.193924	NM_027118	ENSMUSG00000041297	Cdk13	2310015O17Rik|Cdc2l5	cyclin-dependent kinase 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-39762206-4	chr1	39762105	39762305	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41216.0	NM_001145660	619289.0	Mm.334107	NM_001145660	ENSMUSG00000057173	Rfx8	4933400N17Rik	regulatory factor X 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97999907-3	chr11	97999815	98000015	+	801.083313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3742.0	NR_152188	217151.0	Mm.277896	NM_207231	ENSMUSG00000038352	Arl5c	Arl12|BC065791	ADP-ribosylation factor-like 5C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153145516-4	chr2	153145413	153145613	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001172117, intron 11 of 12)	L1MB7|LINE|L1	-15788.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-143954086-2	chr2	143953986	143954186	+	807.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_024281, intron 16 of 23)	intron (NM_024281, intron 16 of 23)	38755.0	NM_019771	56431.0	Mm.28919	NM_019771	ENSMUSG00000015932	Dstn	2610043P17Rik|ADF|AU042046|Dsn|corn1|sid23p	destrin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-10210908-4	chr13	10210794	10210994	+	891.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033269, intron 2 of 4)	CT-rich|Low_complexity|Low_complexity	149909.0	NM_033269	12671.0	Mm.342315	NM_033269	ENSMUSG00000046159	Chrm3	Chrm-3|M3|M3R	cholinergic receptor, muscarinic 3, cardiac	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118246702-3	chr11	118246543	118246743	+	901.8666380000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	MLT1D|LTR|ERVL-MaLR	1949.0	NM_001112699	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-170324912-4	chr2	170324812	170325012	+	999.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	-31449.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129316977-2	chr2	129316877	129317077	+	905.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	-7005.0	NM_010554	16175.0	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140510775-3	chr5	140510674	140510874	+	605.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021528, intron 1 of 1)	intron (NM_021528, intron 1 of 1)	5165.0	NM_021528	59031.0	Mm.28934	NM_021528	ENSMUSG00000036599	Chst12	AI595374|C4S-2|C4ST2	carbohydrate sulfotransferase 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19274152-2	chr7	19274052	19274252	+	772.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-2298.0	NM_001282022	22323.0	Mm.9684	NM_009499	ENSMUSG00000030403	Vasp	-	vasodilator-stimulated phosphoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-13913897-4	chr10	13913807	13914007	+	810.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	42627.0	NR_152745	102634635.0		NR_152745	ENSMUSG00000112172	Gm32172	-	predicted gene, 32172	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-65109215-2	chr3	65109115	65109315	+	719.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010597, exon 1 of 14)	5' UTR (NM_010597, exon 1 of 14)	201.0	NM_010597	16497.0	Mm.316402	NM_010597	ENSMUSG00000027827	Kcnab1	Akr8a8|Kvbeta1.1|mKv(beta)1	potassium voltage-gated channel, shaker-related subfamily, beta member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-12316776-2	chr2	12316676	12316876	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14832.0	NM_001001309	241226.0	Mm.329997	NM_001001309	ENSMUSG00000026768	Itga8	AI447669	integrin alpha 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94572037-3	chr10	94571899	94572099	+	883.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359760, intron 1 of 3)	intron (NM_001359760, intron 1 of 3)	-3258.0	NM_001168684	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-67353622-4	chr17	67353572	67353772	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	CpG	787.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-60181303-2	chr1	60181203	60181403	+	987.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173444, intron 1 of 54)	intron (NM_173444, intron 1 of 54)	704.0	NM_173444	269198.0	Mm.205224	NM_173444	ENSMUSG00000073664	Nbeal1	2310076G13Rik|A530050O19Rik|A530083I02Rik|AI662228|ALS2CR17	neurobeachin like 1	protein-coding	-0.301742415395706	-0.290617935721241	-0.131813085238308	0.195008031973571	-0.0521164749747485	-0.289788033364561	-0.293478728198701	-0.0137358672904686	-0.417252052781475	0.858483864349889	1
Merged-chr12-112894072-2	chr12	112893972	112894172	+	689.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26469.0	NR_105906	102465567.0		NR_105906	ENSMUSG00000098338	Mir6941	Gm27923|mmu-mir-6941	microRNA 6941	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-110668882-2	chr7	110668782	110668982	+	605.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41225.0	NM_009627	11535.0	Mm.1408	NM_009627	ENSMUSG00000030790	Adm	AM	adrenomedullin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-104110699-2	chr2	104110599	104110799	+	882.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007652, intron 2 of 3)	intron (NM_007652, intron 2 of 3)	-12070.0	NM_026634	68243.0	Mm.158191	NM_026634	ENSMUSG00000032671	A930018P22Rik	-	RIKEN cDNA A930018P22 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-98872668-4	chr13	98872547	98872747	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178716, intron 6 of 23)	intron (NM_178716, intron 6 of 23)	18395.0	NM_001048267	238799.0	Mm.173286	NM_178716	ENSMUSG00000009470	Tnpo1	AU021749|D13Ertd688e|IPO2|Kpnb2|MIP|MIP1|TRN	transportin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-119898687-1	chr9	119898587	119898787	+	548.0	f1_c57bl6.idr	intron (NM_026236, intron 1 of 18)	PB1D9|SINE|Alu	3792.0	NM_026236	67561.0	Mm.104789	NM_026236	ENSMUSG00000032512	Wdr48	8430408H12Rik|Uaf1|mKIAA1449	WD repeat domain 48	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-123085491-4	chr10	123085386	123085586	+	986.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8981.0	NM_001163025	67074.0	Mm.169924	NM_153395	ENSMUSG00000034602	Mon2	2610528O22Rik|AW495628|Sf21|mKIAA1040	MON2 homolog, regulator of endosome to Golgi trafficking	protein-coding	2.92807805182108	3.75590160606878	2.6171178166233	3.53478479914317	2.1082779955924	3.71692598882293	1.57482233392277	3.42217534544944	-0.476591338814428	0.539256396234704	0.954403851908463
Merged-chr6-5269308-4	chr6	5269219	5269419	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183308, intron 5 of 8)	intron (NM_183308, intron 5 of 8)	-13086.0	NM_173006	269823.0	Mm.9122	NM_173006	ENSMUSG00000029759	Pon3	2810004E20|AI786302	paraoxonase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-92274008-4	chr13	92273907	92274107	+	866.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010829, exon 15 of 24)	exon (NM_010829, exon 15 of 24)	-80776.0	NM_010049	13361.0	Mm.23695	NM_010049	ENSMUSG00000021707	Dhfr	8430436I03Rik|AA607882|AI662710|AW555094	dihydrofolate reductase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-32278011-4	chr19	32277904	32278104	+	918.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168525, intron 2 of 9)	intron (NM_001168525, intron 2 of 9)	-66991.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-83601952-3	chr13	83601828	83602028	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347569, intron 3 of 10)	intron (NM_001347569, intron 3 of 10)	28321.0	NM_001347569	17260.0	Mm.24001	NM_025282	ENSMUSG00000005583	Mef2c	5430401D19Rik|9930028G15Rik|AV011172|Mef2	myocyte enhancer factor 2C	protein-coding	3.75849427586416	4.18086412756081	2.59723641615018	3.39205227524106	3.16569764751368	3.8576478127853	2.61941582045595	2.81538309037491	-0.623031151484545	0.323977441034509	0.826452445967124
Merged-chr5-16506864-4	chr5	16506779	16506979	+	899.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46616.0	NM_001289460	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-140768378-4	chr6	140768295	140768495	+	979.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	141510.0	NM_001309436	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-17800393-4	chr6	17800271	17800471	+	656.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022332, intron 1 of 15)	intron (NM_022332, intron 1 of 15)	51201.0	NM_001083315	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-21646238-3	chr16	21646159	21646359	+	663.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48406.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-113623593-2	chr5	113623493	113623693	+	741.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008153, intron 1 of 2)	intron (NM_008153, intron 1 of 2)	20010.0	NM_001359060	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122850054-4	chr5	122849954	122850154	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030564)	promoter-TSS (NM_030564)	-134.0	NM_030564	80751.0	Mm.388529	NM_030564	ENSMUSG00000029474	Rnf34	AW061037|AW536122|BC004042|C88279|RIFF	ring finger protein 34	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-121822703-1	chr5	121822603	121822803	+	666.0	f1_c57bl6.idr	intron (NM_001306126, intron 3 of 8)	intron (NM_001306126, intron 3 of 8)	-3430.0	NR_105998	102465624.0		NR_105998	ENSMUSG00000099063	Mir7031	Gm27859|mmu-mir-7031	microRNA 7031	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-100528503-3	chr12	100528416	100528616	+	692.866638	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7694.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-5333619-3	chr9	5333493	5333693	+	767.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007609, intron 7 of 8)	ORR1A4-int|LTR|ERVL-MaLR	-11883.0	NM_009808	12364.0	Mm.42163	NM_009808	ENSMUSG00000025887	Casp12	-	caspase 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-154899884-3	chr4	154899778	154899978	+	665.944458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025582)	promoter-TSS (NM_025582)	-835.0	NM_025582	66469.0	Mm.41868	NM_025582	ENSMUSG00000029059	Fam213b	2810405K02Rik|AI836168|PM/PGFS	family with sequence similarity 213, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-181187806-4	chr2	181187701	181187901	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_151465, exon 2 of 4)	non-coding (NR_151465, exon 2 of 4)	554.0	NM_001356427	66496.0	Mm.213943	NM_025598	ENSMUSG00000016344	Ppdpf	0610012G23Rik|2610317A05Rik|2700038C09Rik|3110053G12Rik	pancreatic progenitor cell differentiation and proliferation factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-3912634-2	chr11	3912534	3912734	+	877.857178	f1_balb.idr|f1_c57bl6.idr	exon (NM_153142, exon 1 of 2)	exon (NM_153142, exon 1 of 2)	2030.0	NM_153142	103710.0	Mm.171514	NM_153142	ENSMUSG00000048807	Slc35e4	A330108F03Rik|AI414849|AI536442	solute carrier family 35, member E4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126908041-3	chr7	126907927	126908127	+	826.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9749.0	NM_028389	68742.0	Mm.248646	NM_026827	ENSMUSG00000060538	Tmem219	1110032O16Rik|2900045G02Rik|IGFBP-3R	transmembrane protein 219	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-97848797-2	chr16	97848697	97848897	+	642.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359077, intron 1 of 23)	intron (NM_001359077, intron 1 of 23)	2430.0	NM_144789	114604.0	Mm.328741	NM_144789	ENSMUSG00000014039	Prdm15	C21orf83|E130018M06Rik|ORF62|Zfp298	PR domain containing 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-95749166-2	chr8	95749066	95749266	+	550.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205226, intron 22 of 48)	intron (NM_001205226, intron 22 of 48)	4048.0	NR_106041	102465650.0		NR_106041	ENSMUSG00000106145	Mir7073	mmu-mir-7073	microRNA 7073	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-92636272-2	chr7	92636172	92636372	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_028665, exon 1 of 12)	5' UTR (NM_028665, exon 1 of 12)	870.0	NM_028665	73845.0	Mm.73248	NM_028665	ENSMUSG00000041343	Ankrd42	4931426M20|4933417L02Rik|Ikbn	ankyrin repeat domain 42	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-118701754-1	chr2	118701654	118701854	+	623.0	f1_balb.idr	3' UTR (NM_001081971, exon 1 of 1)	3' UTR (NM_001081971, exon 1 of 1)	2209.0	NM_001081971	383787.0	Mm.35758	NM_001081971	ENSMUSG00000078137	Ankrd63	Gm1337	ankyrin repeat domain 63	protein-coding	-1.01141362372852	-0.989706134456912	-1.00316642475632	-1.00675598761451	-1.01071814941888	-0.986789233398088	-1.0001193100737	-0.11057046896199	3.2289113956799	0.314019726092946	1
Merged-chr11-54858920-2	chr11	54858820	54859020	+	581.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029327, intron 1 of 4)	ID_B1|SINE|B4	1671.0	NM_029327	75530.0	Mm.83578	NM_029327	ENSMUSG00000020268	Lyrm7	1700024C24Rik|9330147L21Rik	LYR motif containing 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-126096635-4	chr4	126096544	126096744	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138721)	promoter-TSS (NM_138721)	-9.0	NM_001163266	116748.0	Mm.41865	NM_138721	ENSMUSG00000050188	Lsm10	-	U7 snRNP-specific Sm-like protein LSM10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-12464343-4	chr13	12464237	12464437	+	912.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-2599.0	NM_001291057	56048.0	Mm.474138	NM_018886	ENSMUSG00000057554	Lgals8	1200015E08Rik|AI326142|D13Ertd524e|Lgals-8	lectin, galactose binding, soluble 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-76364807-4	chr16	76364709	76364909	+	851.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173440, intron 1 of 3)	intron (NM_173440, intron 1 of 3)	8240.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-86069581-4	chr5	86069382	86069582	+	880.6749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2264.0	NM_019992	56792.0	Mm.131237	NM_019992	ENSMUSG00000029254	Stap1	AI586015|Brdg1|STAP-1	signal transducing adaptor family member 1	protein-coding	0.99481378267191	1.56342480173801	0.907015418374813	0.882060503878136	0.845801819833508	1.9696538239391	0.688481843158711	1.06067003345376	0.525672775225456	0.700165497727394	0.998431161219273
Merged-chr13-107885173-3	chr13	107885077	107885277	+	840.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 2 of 14)	intron (NM_145456, intron 2 of 14)	4887.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-90305518-1	chr3	90305418	90305618	+	610.0	f1_balb.idr	Intergenic	Intergenic	35369.0	NR_105979	102465612.0		NR_105979	ENSMUSG00000099199	Mir7012	Gm27370|mmu-mir-7012	microRNA 7012	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-76114796-4	chr14	76114696	76114896	+	981.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013745, intron 3 of 9)	intron (NM_013745, intron 3 of 9)	3905.0	NM_013745	27275.0	Mm.21138	NM_013745	ENSMUSG00000022009	Nufip1	Nufip	nuclear fragile X mental retardation protein interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-4154436-3	chr12	4154355	4154555	+	814.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159537, intron 2 of 21)	intron (NM_001159537, intron 2 of 21)	20302.0	NM_138305	104111.0	Mm.489807	NM_138305	ENSMUSG00000020654	Adcy3	AC3|mKIAA0511	adenylate cyclase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-95731566-2	chr16	95731466	95731666	+	692.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29159.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35830595-1	chr17	35830495	35830695	+	774.0	f1_c57bl6.idr	intron (NM_008027, intron 10 of 12)	RSINE1|SINE|B4	7238.0	NM_008027	14251.0	Mm.2931	NM_008027	ENSMUSG00000059714	Flot1	reggie-2	flotillin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-87333829-1	chr5	87333729	87333929	+	542.0	f1_balb.idr	intron (NM_028094, intron 1 of 5)	intron (NM_028094, intron 1 of 5)	3366.0	NM_028094	72094.0	Mm.482739	NM_028094	ENSMUSG00000035780	Ugt2a3	2010321J07Rik	UDP glucuronosyltransferase 2 family, polypeptide A3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-128059995-3	chr8	128059849	128060049	+	827.007935	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	218276.0	NR_105822	102465212.0		NR_105822	ENSMUSG00000099326	Mir21c	Gm28013|mmu-mir-21c	microRNA 21c	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-23801823-1	chr18	23801723	23801923	+	578.0	f1_balb.idr	intron (NM_001162941, intron 2 of 7)	intron (NM_001162941, intron 2 of 7)	-2147.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	-1.36015291771705	-1.32842431658676	-1.33874579108173	-1.34722415754512	-1.35969949349639	-1.32618761000664	-1.33640923549635	-0.791042329471244	2.42373733289067	0.484013421080845	1
Merged-chr10-80955830-4	chr10	80955737	80955937	+	880.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038655, intron 2 of 3)	intron (NM_001038655, intron 2 of 3)	25746.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-31948634-2	chr12	31948534	31948734	+	733.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177993, intron 1 of 8)	intron (NM_177993, intron 1 of 8)	1611.0	NM_177993	73389.0	Mm.390461	NM_153198	ENSMUSG00000002996	Hbp1	1700058O05Rik|BE629963|C330012F01Rik|C86454	high mobility group box transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16294400-3	chr7	16294270	16294470	+	884.9714359999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-7575.0	NM_001136471	243846.0	Mm.482401	NM_172297	ENSMUSG00000041375	Ccdc9	2600011L02Rik	coiled-coil domain containing 9	protein-coding	1.72873452015334	1.90938332293811	1.98548997771056	2.24128406078493	1.74048369624706	1.92212323873963	1.99996822271697	2.25210930544658	0.0360726516783052	0.969074109797625	0.998431161219273
Merged-chr17-12367599-3	chr17	12367494	12367694	+	849.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11015.0	NM_008877	18815.0	Mm.971	NM_008877	ENSMUSG00000059481	Plg	AI649309|Pg	plasminogen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-98514550-2	chr6	98514450	98514650	+	804.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-171796.0	NM_001128092	330390.0	Mm.484161	NM_001128092	ENSMUSG00000090667	Gm765	-	predicted gene 765	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-107661367-4	chr7	107661263	107661463	+	975.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008905, intron 3 of 24)	intron (NM_008905, intron 3 of 24)	-4115.0	NM_001357437	19024.0	Mm.2817	NM_008905	ENSMUSG00000036528	Ppfibp2	Cclp1	PTPRF interacting protein, binding protein 2 (liprin beta 2)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-63998185-2	chr7	63998085	63998285	+	681.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59270.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126548643-2	chr8	126548518	126548718	+	779.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	44818.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123755411-4	chr5	123755298	123755498	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042421, intron 2 of 63)	intron (NM_001042421, intron 2 of 63)	5672.0	NM_001042421	208628.0	Mm.441089	NM_001042421	ENSMUSG00000029414	Kntc1	D330012D13|jgl	kinetochore associated 1	protein-coding	0.624842645636609	0.99556711280163	0.36768996814487	0.362047410755034	0.631867128994586	1.00696834627111	0.70691920547463	0.363033899015389	0.4614730680719	0.791201893915018	1
Merged-chr1-167370073-4	chr1	167370005	167370205	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20114.0	NM_019993	56752.0	Mm.292539	NM_019993	ENSMUSG00000026687	Aldh9a1	AA139417|Abaldh|ESTM40|TMABA-DH|Tmabadh	aldehyde dehydrogenase 9, subfamily A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-178020938-4	chr2	178020825	178021025	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	-2359.0	NM_001177400	626848.0	Mm.422604	NM_001177399	ENSMUSG00000074519	Zfp971	Etohi1	zinc finger protein 971	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-40576512-4	chr6	40576412	40576612	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_021364, exon 6 of 6)	3' UTR (NM_021364, exon 6 of 6)	5124.0	NM_146383	258381.0	Mm.377469	NM_146383	ENSMUSG00000045514	Olfr460	MOR120-2	olfactory receptor 460	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-60021240-2	chr2	60021140	60021340	+	827.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001182, intron 2 of 35)	ID_B1|SINE|B4	104500.0	NM_001001182	407823.0	Mm.228071	NM_001001182	ENSMUSG00000026987	Baz2b	5830435C13Rik|BC053917|D2Ertd794e	bromodomain adjacent to zinc finger domain, 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-22843821-4	chr8	22843727	22843927	+	765.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB3|LINE|L1	-15712.0	NM_001081149	244349.0	Mm.182776	NM_001081149	ENSMUSG00000031540	Kat6a	1500036M03|9930021N24Rik|MOZ|Myst3|Zfp220	K(lysine) acetyltransferase 6A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44841320-2	chr7	44841220	44841420	+	945.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_010215)	TTS (NM_010215)	5032.0	NM_010215	14204.0	Mm.2565	NM_010215	ENSMUSG00000074141	Il4i1	Fig1|Fig1-ps|LAAO|LAO	interleukin 4 induced 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-93922718-3	chr13	93922609	93922809	+	928.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009712, intron 6 of 7)	intron (NM_009712, intron 6 of 7)	131932.0	NR_049198	100885837.0		NR_049198	ENSMUSG00000093480	Mir5624	Gm25075|mir-5624|mmu-mir-5624	microRNA 5624	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-64873010-4	chr7	64872896	64873096	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023239)	promoter-TSS (NM_023239)	44.0	NM_023239	66647.0	Mm.19944	NM_023239	ENSMUSG00000070520	Nsmce3	5730494G16Rik|AI642138|BB044375|HCA4|Mageg1|Ndnl2|mage-g1	NSE3 homolog, SMC5-SMC6 complex component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-57581417-4	chr6	57581311	57581511	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025992, intron 1 of 22)	intron (NM_025992, intron 1 of 22)	419.0	NM_025992	67138.0	Mm.297393	NM_025992	ENSMUSG00000029798	Herc6	1700121D12Rik|2510038N07Rik|4930427L17Rik|AI451296|CEB1|Herc5	hect domain and RLD 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-122394122-1	chr3	122394022	122394222	+	745.0	f0_balb.idr	Intergenic	Intergenic	-25635.0	NM_013867	29815.0	Mm.45815	NM_013867	ENSMUSG00000028121	Bcar3	AI131758|AND-34	breast cancer anti-estrogen resistance 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-142399019-4	chr7	142398891	142399091	+	853.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-11121.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89998719-4	chr3	89998625	89998825	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310681)	promoter-TSS (NM_001310681)	-9.0	NM_001282032	23897.0	Mm.256035	NM_011826	ENSMUSG00000027944	Hax1	HAX-1|HSP1BP-1|Hs1bp1|SIG-111|Silg111|mHAX-1s	HCLS1 associated X-1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-86898647-2	chr12	86898547	86898747	+	597.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	-13833.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-93969085-1	chr11	93968985	93969185	+	721.0	f1_balb.idr	promoter-TSS (NM_008704)	promoter-TSS (NM_008704)	-564.0	NM_008704	18102.0	Mm.439702	NM_008704	ENSMUSG00000037601	Nme1	AL024257|NDPK-A|NM23-M1|NM23A	NME/NM23 nucleoside diphosphate kinase 1	protein-coding	2.85189062662837	1.42809174588626	3.09708784251371	2.02185258380127	3.38512799544608	1.43799648796429	2.41684985580336	3.02458236811282	0.45780980438989	0.625832876051139	0.980912176761026
Merged-chr5-34661151-1	chr5	34661051	34661251	+	540.0	f1_balb.idr	intron (NM_001080743, intron 1 of 5)	intron (NM_001080743, intron 1 of 5)	772.0	NM_019497	14772.0	Mm.117076	NM_019497	ENSMUSG00000052783	Grk4	A830025H08Rik|GRK|Gprk2l|Gprk4	G protein-coupled receptor kinase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-131245952-2	chr3	131245852	131246052	+	724.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008212, intron 3 of 7)	intron (NM_008212, intron 3 of 7)	26149.0	NM_008212	15107.0	Mm.260164	NM_008212	ENSMUSG00000027984	Hadh	AA409008|AU019341|AW742602|HCDH|Hadhsc|Schad	hydroxyacyl-Coenzyme A dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122267941-2	chr8	122267841	122268041	+	671.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14200.0	NM_009569	22761.0	Mm.3105	NM_009569	ENSMUSG00000049577	Zfpm1	FOG|Fog1	zinc finger protein, multitype 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-84994023-1	chr1	84993923	84994123	+	989.0	f1_balb.idr	Intergenic	Intergenic	-58940.0	NM_027921	71781.0	Mm.158754	NM_027921	ENSMUSG00000026220	Slc16a14	1110004H10Rik	solute carrier family 16 (monocarboxylic acid transporters), member 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180432050-4	chr1	180431958	180432158	+	990.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001081227)	TTS (NM_001081227)	51446.0	NM_001081227	381310.0	Mm.44791	NM_001081227	ENSMUSG00000053963	Stum	6330403A02Rik|Gm10001|R75555	mechanosensory transduction mediator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-43069055-3	chr17	43068959	43069159	+	891.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178589, intron 4 of 5)	intron (NM_178589, intron 4 of 5)	52504.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	2.32232630902381	2.61255340103664	1.70206377579713	2.04101993917813	2.85902563713837	1.99691155164981	3.35206794573232	2.76495773736916	1.29189992805098	0.113603653642651	0.528164545235542
Merged-chr4-127124546-2	chr4	127124448	127124648	+	676.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001285885)	TTS (NM_001285885)	-1495.0	NM_001099319	100039968.0	Mm.392655	NM_001099319	ENSMUSG00000070737	Tmem35b	Gm12942|Zmym6nb	transmembrane protein 35B	protein-coding	-0.328776573856028	-0.600188814636732	-0.604272739944933	-0.607431646519224	-0.611907711007944	-0.599269851726019	-0.603370993079868	0.239327087033985	1.90174218327966	0.499153276903018	1
Merged-chr8-107425097-4	chr8	107425020	107425220	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026277)	promoter-TSS (NM_026277)	-82.0	NM_026277	67619.0	Mm.36817	NM_026277	ENSMUSG00000003848	Nob1	1700021I09Rik|ART-4|Nob1p|Psmd8bp1	NIN1/RPN12 binding protein 1 homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-113632822-4	chr8	113632728	113632928	+	911.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2758.0	NM_001048143	270096.0	Mm.74689	NM_173015	ENSMUSG00000078908	Mon1b	5031407H10|5033413H12Rik	MON1 homolog B, secretory traffciking associated	protein-coding	0.221605030936224	-0.487239964750612	-0.49120836588167	-0.494269310236585	-0.498593662273297	-0.486345272178728	-0.490333205032157	-0.0579379631856254	-0.940474356705701	0.734885036005541	1
Merged-chr1-93636385-3	chr1	93636285	93636485	+	818.583313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021537)	promoter-TSS (NM_021537)	-658.0	NM_021537	59041.0	Mm.28761	NM_021537	ENSMUSG00000026277	Stk25	1500019J11Rik|AU018434|C86992|Ste20-like|Ysk1	serine/threonine kinase 25 (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-35253178-4	chr6	35253084	35253284	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027875, intron 1 of 2)	intron (NR_027875, intron 1 of 2)	452.0	NR_027875	67705.0	Mm.228046	NR_015608	ENSMUSG00000073155	1810058I24Rik	AI414869|AI848234	RIKEN cDNA 1810058I24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-124241064-3	chr8	124240904	124241104	+	705.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139272, intron 1 of 15)	intron (NM_139272, intron 1 of 15)	9610.0	NM_139272	108148.0	Mm.33808	NM_139272	ENSMUSG00000089704	Galnt2	AI480629	polypeptide N-acetylgalactosaminyltransferase 2	protein-coding	-2.18138529563533	-2.15523716995652	-2.1631445789866	-2.16963996020037	-2.05513010215571	-2.15352360143315	-2.16135451490766	-2.16847729006863	0.759018020146679	0.829933115115583	1
Merged-chr16-94602462-2	chr16	94602362	94602562	+	764.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113389, intron 1 of 11)	intron (NM_001113389, intron 1 of 11)	-8957.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71278563-1	chr8	71278463	71278663	+	545.0	f1_c57bl6.idr	intron (NM_001142322, intron 1 of 39)	intron (NM_001142322, intron 1 of 39)	5849.0	NM_001142323	17925.0	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	-0.911481480886591	-0.898215642992522	-0.459082056543934	-0.907960834089373	-0.536665650048259	-0.895592930349906	-0.905223025989836	-0.90758942202298	-0.317626373511902	0.91927360265618	1
Merged-chr1-155058123-2	chr1	155058023	155058223	+	810.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	25141.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-64095885-2	chr15	64095785	64095985	+	961.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 26 of 28)	ORR1C2|LTR|ERVL-MaLR	-35437.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-54085680-3	chr2	54085613	54085813	+	846.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023396)	promoter-TSS (NM_023396)	-161.0	NM_023396	67874.0	Mm.27086	NM_023396	ENSMUSG00000075334	Rprm	2410012A13Rik|Reprimo	reprimo, TP53 dependent G2 arrest mediator candidate	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-62929417-4	chr13	62929351	62929551	+	917.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-35442.0	NM_001289926	72061.0	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124526731-3	chr5	124526620	124526820	+	887.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021430, intron 1 of 6)	L2c|LINE|L2	4671.0	NM_021430	75695.0	Mm.41180	NM_021430	ENSMUSG00000029392	Rilpl1	2900002H16Rik|6330559I19Rik|GOSPEL	Rab interacting lysosomal protein-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-72933826-4	chr14	72933727	72933927	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-91776.0	NR_027860	668489.0	Mm.158324	NR_027860		Gm9199	EG668489	glycine cleavage system protein H (aminomethyl carrier) pseudogene	pseudo	1.74081627045331	1.5378768686858	2.45797410811247	1.17131659340835	1.7569610279291	1.99394700212475	3.3597829942488	2.90632422690852	1.85060149708761	0.0581111624899942	0.356207967075077
Merged-chr8-46834105-2	chr8	46834005	46834205	+	965.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008391, intron 6 of 8)	intron (NM_008391, intron 6 of 8)	94360.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-6561047-4	chr11	6560962	6561162	+	974.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001190344, intron 1 of 9)	intron (NM_001190344, intron 1 of 9)	879.0	NM_001190344	216527.0	Mm.221271	NM_146014	ENSMUSG00000000378	Ccm2	BC029157	cerebral cavernous malformation 2	protein-coding	1.30499943501171	1.02411685265326	1.63698757251958	1.2642536126002	1.66078939419717	0.811727796898661	0.799310366372615	1.13496742201057	-0.626188253868672	0.648708344430037	0.985300985663378
Merged-chr11-94937080-4	chr11	94936963	94937163	+	800.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007742, intron 1 of 50)	intron (NM_007742, intron 1 of 50)	839.0	NM_007742	12842.0	Mm.277735	NM_007742	ENSMUSG00000001506	Col1a1	Col1a-1|Cola-1|Cola1|Mov-13|Mov13	collagen, type I, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-112942565-1	chr12	112942465	112942665	+	678.0	f0_c57.idr	promoter-TSS (NM_025399)	promoter-TSS (NM_025399)	-423.0	NM_001316724	66174.0	Mm.7070	NM_025399	ENSMUSG00000002804	Nudt14	1110030M18Rik|UGPPase	nudix (nucleoside diphosphate linked moiety X)-type motif 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-121792360-4	chr8	121792251	121792451	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37218.0	NM_145605	234825.0	Mm.209329	NM_145605	ENSMUSG00000040263	Klhdc4	AA408426|AV352552|BC012312|G430025P05Rik	kelch domain containing 4	protein-coding	4.39274462892527	4.78658895920115	4.93587028234352	3.97255692559092	3.52640536904837	2.92250881300462	4.40085107858109	3.45310523147216	-1.17342814162484	0.0154338676778116	0.148061469401692
Merged-chr17-21535676-6	chr17	21535601	21535801	+	953.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_144515, exon 1 of 5)	5' UTR (NM_144515, exon 1 of 5)	162.0	NM_144515	22710.0	Mm.296100	NM_144515	ENSMUSG00000051341	Zfp52	KRAB11|Zfp-52|Zfp76|mszf23-2|mszf24|mszf34|mszf75|zfec29	zinc finger protein 52	protein-coding	1.39517280400639	0.993689134120902	1.75373455662006	1.89056446656364	1.62398214133578	1.57434897123816	0.981188895875262	1.59963314394564	-0.298137335125638	0.809234629719002	0.998431161219273
Merged-chr11-53775966-4	chr11	53775882	53776082	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001159396, exon 9 of 10)	exon (NM_001159396, exon 9 of 10)	5509.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-49002206-2	chr13	49002106	49002306	+	778.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34094.0	NR_015601	68128.0	Mm.426304	NR_015601		Fam120aos	C030044B11Rik	family with sequence similarity 120A, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-60463726-2	chr14	60463626	60463826	+	614.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17B2|LTR|ERVK	85440.0	NM_001164705	72125.0	Mm.275499	NM_028113	ENSMUSG00000021986	Amer2	2600011E07Rik|Fam123a	APC membrane recruitment 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-62821739-4	chr5	62821627	62821827	+	962.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170705, intron 2 of 8)	intron (NM_001170705, intron 2 of 8)	7904.0	NM_001170705	100322896.0	Mm.479821	NM_001170705	ENSMUSG00000090326	Dthd1	Gm17384	death domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-93503711-2	chr11	93503611	93503811	+	668.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361708, intron 5 of 9)	intron (NM_001361708, intron 5 of 9)	382055.0	NM_001013375	217109.0	Mm.379350	NM_001013375	ENSMUSG00000054079	Utp18	6230425C22Rik|6430513M13|Wdr50	UTP18 small subunit processome component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-16619809-2	chr1	16619709	16619909	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025773)	promoter-TSS (NM_025773)	-471.0	NM_001271017	66799.0	Mm.122430	NM_025773	ENSMUSG00000025939	Ube2w	6130401J04Rik	ubiquitin-conjugating enzyme E2W (putative)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-73380476-4	chr14	73380382	73380582	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008410, intron 1 of 5)	intron (NM_008410, intron 1 of 5)	4807.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-36041577-2	chr17	36041477	36041677	+	763.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001347382, exon 4 of 9)	exon (NM_001347382, exon 4 of 9)	1115.0	NM_010399	15051.0	Mm.195061	NM_010399		H2-T9	H-2T9	histocompatibility 2, T region locus 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-56369353-4	chr10	56369188	56369388	+	845.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8012.0	NM_010288	14609.0	Mm.378921	NM_010288	ENSMUSG00000050953	Gja1	AU042049|AW546267|Cnx43|Cx43|Cx43alpha1|Gja-1|Npm1|connexin43	gap junction protein, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-60878079-5	chr2	60877859	60878059	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	3479.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-9619729-3	chr3	9619623	9619823	+	886.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9638.0	NM_133218	170753.0	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	2.92559623555167	3.08520905657115	3.47095026482103	3.44162147657425	2.30893428212486	2.99849768851203	2.34233606344075	3.00884233328025	-0.978395440902021	0.137229807414621	0.577469500630244
Merged-chr2-91272316-1	chr2	91272216	91272416	+	558.0	f1_c57bl6.idr	TTS (NM_001311144)	TTS (NM_001311144)	7201.0	NM_023854	77038.0	Mm.43636	NM_023854	ENSMUSG00000027255	Arfgap2	2310032E02Rik|Zfp289	ADP-ribosylation factor GTPase activating protein 2	protein-coding	2.14909313758439	0.741617304735242	0.72211330889821	1.29548703348644	2.17066039971379	0.74592283352318	0.726473627817332	1.30374935169266	0.0392582796727013	0.97920952079056	0.998431161219273
Merged-chr13-113433691-4	chr13	113433581	113433781	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	69163.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-55097345-3	chr15	55097265	55097465	+	925.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A2|LTR|ERVL-MaLR	-6874.0	NM_001355594	72107.0	Mm.486550	NM_183089	ENSMUSG00000022422	Dscc1	2010006I05Rik|2600005O03Rik|Dcc1	DNA replication and sister chromatid cohesion 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-75505523-1	chr18	75505423	75505623	+	883.0	f1_balb.idr	intron (NM_201354, intron 9 of 11)	intron (NM_201354, intron 9 of 11)	-9122.0	NR_045879	100038353.0	Mm.440724	NR_045879	ENSMUSG00000097712	Gm10532	-	predicted gene 10532	ncRNA	1.73826272447644	1.01862534756467	1.45083610722901	1.40836144422389	2.67263410665555	1.02410932551224	1.46272283356244	2.33040129536138	1.71247247792941	0.14433351621251	0.593767767787634
Merged-chr7-144906758-2	chr7	144906658	144906858	+	744.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8342.0	NM_001357868	72284.0	Mm.273049	NM_028184	ENSMUSG00000031072	Oraov1	2210010N10Rik|TAOS1	oral cancer overexpressed 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-54995930-2	chr11	54995830	54996030	+	693.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_138556, intron 14 of 24)	intron (NR_138556, intron 14 of 24)	-32990.0	NM_001271455	57783.0	Mm.259671	NM_021327	ENSMUSG00000020400	Tnip1	ABIN|ABIN-1|ABIN1|AU018810|Naf1|Nef|VAN	TNFAIP3 interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-64627664-3	chr11	64627562	64627762	+	845.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-190988.0	NR_028445	654805.0	Mm.436132	NR_028445		F930015N05Rik	-	RIKEN cDNA F930015N05 gene	ncRNA	-1.18832717429738	-1.16380929885254	-0.856565824811958	-1.18328408639367	-1.18787580914644	-1.16149229066421	-0.849604865165746	-1.18171197755832	0.0406512889656815	0.990321405100139	1
Merged-chr12-85110035-2	chr12	85109935	85110135	+	779.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030225)	promoter-TSS (NM_030225)	-798.0	NM_030225	78920.0	Mm.296221	NM_030225	ENSMUSG00000004789	Dlst	1600017E01Rik|4632413C10Rik|4930529O08Rik|DLTS	dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-164078649-2	chr1	164078549	164078749	+	675.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164059, intron 7 of 7)	intron (NM_001164059, intron 7 of 7)	16573.0	NM_011346	20343.0	Mm.1461	NM_011346	ENSMUSG00000026581	Sell	AI528707|CD62L|L-selectin|LECAM-1|Lnhr|Ly-22|Ly-m22|Lyam-1|Lyam1	selectin, lymphocyte	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21017327-2	chr9	21017227	21017427	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010493, intron 1 of 6)	intron (NM_010493, intron 1 of 6)	1387.0	NM_010493	15894.0	Mm.435508	NM_010493	ENSMUSG00000037405	Icam1	CD54|Icam-1|Ly-47|MALA-2	intercellular adhesion molecule 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116617379-2	chr11	116617279	116617479	+	795.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172572, intron 1 of 18)	intron (NM_172572, intron 1 of 18)	6873.0	NM_001167680	217344.0	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-64569058-2	chr2	64568958	64569158	+	575.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	453708.0	NM_016719	50915.0	Mm.214554	NM_016719	ENSMUSG00000026888	Grb14	AI505286	growth factor receptor bound protein 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32530630-2	chr2	32530523	32530723	+	648.0	f0_balb.idr|f0_c57.idr	Intergenic	MTD|LTR|ERVL-MaLR	-4736.0	NM_153560	98952.0	Mm.4065	NM_153560	ENSMUSG00000039157	Fam102a	AI426465|C230093N12Rik|Eeig1	family with sequence similarity 102, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-78375886-2	chr11	78375786	78375986	+	843.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008238, intron 1 of 8)	intron (NM_008238, intron 1 of 8)	10722.0	NM_008238	15218.0	Mm.4496	NM_008238	ENSMUSG00000002057	Foxn1	D11Bhm185e|Fkh19|HFH-11|Hfh11|Whn|nu|nude	forkhead box N1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-153957209-4	chr4	153957093	153957293	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163019)	promoter-TSS (NM_001163019)	-44.0	NM_175287	97159.0	Mm.7066	NM_175287	ENSMUSG00000047613	A430005L14Rik	C79672	RIKEN cDNA A430005L14 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70092225-4	chr11	70092105	70092305	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001313926)	promoter-TSS (NM_001313926)	-439.0	NM_007493	11890.0	Mm.1357	NM_007493	ENSMUSG00000040963	Asgr2	ASGPR2|Asgr|Asgr-2|HL-2	asialoglycoprotein receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-113684100-4	chr11	113684009	113684209	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138598)	promoter-TSS (NM_138598)	42.0	NM_138598	28081.0	Mm.351688	NM_138598	ENSMUSG00000041629	Fam104a	D11Wsu99e	family with sequence similarity 104, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71663458-2	chr17	71663358	71663558	+	672.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-9803.0	NM_177087	320159.0	Mm.187372	NM_177087	ENSMUSG00000045761	Togaram2	4632412N22Rik|Fam179a	TOG array regulator of axonemal microtubules 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-84678231-4	chr2	84678167	84678367	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290751)	promoter-TSS (NM_001290751)	-93.0	NM_001290751	66958.0	Mm.371621	NM_025868	ENSMUSG00000050043	Tmx2	2310042M24Rik|AA589631|Txndc14	thioredoxin-related transmembrane protein 2	protein-coding	6.07509967617044	6.44074169156774	6.18319559838223	6.21713399171143	5.81587157630858	6.51144024224157	6.36110083985609	6.1756067934318	-0.00071928037273827	0.997463484080416	0.999268611847349
Merged-chr6-120363907-6	chr6	120363813	120364013	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145997)	promoter-TSS (NM_145997)	-186.0	NM_145997	214899.0	Mm.404761	NM_145997	ENSMUSG00000030180	Kdm5a	AA409370|C76986|Jarid1a|RBP2|Rbbp2	lysine (K)-specific demethylase 5A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-8993436-4	chr12	8993336	8993536	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159527, intron 10 of 26)	B4A|SINE|B4	19435.0	NM_172470	74682.0	Mm.87389	NM_172470	ENSMUSG00000066643	Wdr35	4930459M12Rik|4931430C06|mKIAA1336	WD repeat domain 35	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135152371-1	chr4	135152271	135152471	+	542.0	f1_c57bl6.idr	intron (NM_019732, intron 1 of 5)	CpG	31726.0	NM_019732	12399.0	Mm.378894	NM_019732	ENSMUSG00000070691	Runx3	AML2|Cbfa3|Pebp2a3	runt related transcription factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-5414621-2	chr5	5414521	5414721	+	712.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34370.0	NM_011074	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-136525161-2	chr1	136525061	136525261	+	670.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001287179, intron 26 of 28)	intron (NM_001287179, intron 26 of 28)	57313.0	NM_001287179	381293.0	Mm.458468	NM_001081258	ENSMUSG00000041498	Kif14	D1Ertd367e|E130203M01	kinesin family member 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36470382-2	chr18	36470283	36470483	+	665.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CAG)n|Simple_repeat|Simple_repeat	-15888.0	NM_026027	67199.0	Mm.30184	NM_026027	ENSMUSG00000024346	Pfdn1	2700086I23Rik|AA408327|AU044714	prefoldin 1	protein-coding	0.742526839391205	0.367494024423821	0.359483516269203	1.01692403866707	0.751784950221634	1.13546688089727	0.361254611320334	0.354356164297892	0.22968199504489	0.900597210970782	1
Merged-chr11-106193090-3	chr11	106192998	106193198	+	951.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252449, intron 1 of 10)	intron (NM_001252449, intron 1 of 10)	505.0	NM_001252448	72149.0	Mm.403722	NM_028126	ENSMUSG00000069631	Strada	2610019A05Rik|6030402H20Rik|AI480680|E130112C09Rik	STE20-related kinase adaptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-3451313-2	chr11	3451213	3451413	+	840.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_145355, intron 1 of 7)	L3|LINE|CR1	-1124.0	NR_028317	71523.0	Mm.72795	NM_027820	ENSMUSG00000034587	8430429K09Rik	-	RIKEN cDNA 8430429K09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-106335969-1	chr12	106335869	106336069	+	664.0	f1_balb.idr	Intergenic	Intergenic	111697.0	NR_036593	76639.0	Mm.375609	NR_036593	ENSMUSG00000092066	1700121N20Rik	-	RIKEN cDNA 1700121N20 gene	ncRNA	-0.764648945392083	-0.754086259354115	-0.757544880642854	-0.760214620353687	-0.482139607878127	-0.753306916925858	-0.0548312926197707	-0.759748144135135	3.28066214419949	0.252943705171362	1
Merged-chr13-52608953-2	chr13	52608853	52609053	+	777.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_011518, intron 1 of 13)	intron (NM_011518, intron 1 of 13)	12071.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150092512-3	chr4	150092418	150092618	+	601.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177366, intron 1 of 3)	intron (NM_177366, intron 1 of 3)	5015.0	NM_177366	269604.0	Mm.219307	NM_177366	ENSMUSG00000047875	Gpr157	F730108M23Rik	G protein-coupled receptor 157	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-48776798-3	chr11	48776670	48776870	+	864.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-23590.0	NM_008143	14694.0	Mm.5305	NM_008143	ENSMUSG00000020372	Rack1	AL033335|GB-like|Gnb2-rs1|Gnb2l1|p205	receptor for activated C kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-84855560-2	chr15	84855460	84855660	+	793.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356573)	promoter-TSS (NM_001356573)	-461.0	NM_001356573	271305.0	Mm.101022	NM_001081166	ENSMUSG00000016624	Phf21b	A730032D07Rik	PHD finger protein 21B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-76576071-2	chr11	76575971	76576171	+	761.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198894, intron 1 of 22)	intron (NM_198894, intron 1 of 22)	1668.0	NM_198894	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	1.04017055053379	0.742808955179294	0.727193535241117	1.49528461799747	1.41621679084226	1.19140011479317	0.7306708653209	2.07746061746862	1.49474292094698	0.298243927237117	0.800257675359925
Merged-chr5-96159778-2	chr5	96159678	96159878	+	573.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144910, intron 1 of 11)	intron (NM_144910, intron 1 of 11)	1769.0	NM_001285511	231464.0	Mm.28374	NM_144910	ENSMUSG00000034724	Cnot6l	4932442K20Rik	CCR4-NOT transcription complex, subunit 6-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-110416626-6	chr5	110416476	110416676	+	986.361084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142642, intron 3 of 18)	(TG)n|Simple_repeat|Simple_repeat	-29449.0	NM_028596	381668.0	Mm.348782	NM_028596	ENSMUSG00000043323	Fbrsl1	2410025L10Rik|AI467568|Gm1049|Gm29766|mKIAA1545	fibrosin-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-54236827-2	chr11	54236727	54236927	+	895.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13072.0	NM_009969	12981.0	Mm.4922	NM_009969	ENSMUSG00000018916	Csf2	CSF|Csfgm|GMCSF|Gm-CSf|MGI-IGM	colony stimulating factor 2 (granulocyte-macrophage)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-20544631-4	chr9	20544516	20544716	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23197.0	NM_001082485	77519.0	Mm.431849	NM_001082485	ENSMUSG00000060510	Zfp266	5330440G10Rik|5730601F06Rik|AW552317	zinc finger protein 266	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-30583454-2	chr12	30583326	30583526	+	682.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4B|LINE|L1	-1017.0	NM_172049	211986.0	Mm.34035	NM_172049	ENSMUSG00000043061	Tmem18	BC024093	transmembrane protein 18	protein-coding	0.754735755539629	0.297611490341311	0.965759366173244	0.285484332377805	0.277993923360096	0.803311232136348	0.474776739592568	0.455008605429028	-0.603167666615802	0.740033687752466	1
Merged-chr17-65768667-4	chr17	65768548	65768748	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133685, intron 1 of 6)	intron (NM_133685, intron 1 of 6)	4104.0	NM_133685	106572.0	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	3.69422546387773	2.56595138997927	3.87032522318797	3.35068532025449	3.28356739886011	3.05983898242865	4.06594408912954	3.36785971058491	0.0599560322474618	0.918854993902465	0.998431161219273
Merged-chr4-118428083-4	chr4	118427991	118428191	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019422)	promoter-TSS (NM_019422)	-2.0	NM_001039175	54325.0	Mm.282096	NM_019422	ENSMUSG00000006390	Elovl1	AA407424|BB151133|Ssc1	elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44966990-4	chr9	44966909	44967109	+	932.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1409.0	NM_145400	140630.0	Mm.215069	NM_145400	ENSMUSG00000059890	Ube4a	4732444G18Rik|9930123J21Rik|UFD2b	ubiquitination factor E4A	protein-coding	2.83133823495681	3.17998115768571	3.37688712615211	2.31445073900745	1.66871364786163	2.77793488731191	2.23686945567934	3.48345768216785	-0.459508721298444	0.558372075532586	0.960321604678676
Merged-chr5-95953527-2	chr5	95953427	95953627	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	-3412.0	NM_018866	55985.0	Mm.10116	NM_018866	ENSMUSG00000023078	Cxcl13	4631412M08Rik|ANGIE2|Angie|BCA-1|BLC|BLR1L|Scyb13	chemokine (C-X-C motif) ligand 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-102828646-4	chr14	102828537	102828737	+	971.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	153995.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-25276213-2	chr8	25276113	25276313	+	828.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30057.0	NR_040352	74489.0	Mm.256468	NR_040352	ENSMUSG00000110140	5430421F17Rik	-	RIKEN cDNA 5430421F17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-24515496-3	chr13	24515368	24515568	+	862.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66721.0	NM_001286100	193385.0	Mm.217319	NM_029679	ENSMUSG00000036006	Ripor2	Fam65b	RHO family interacting cell polarization regulator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-37618261-4	chr17	37618163	37618363	+	862.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	6370.0	NM_146632	258625.0	Mm.377599	NM_146632	ENSMUSG00000061336	Olfr116	MOR218-2	olfactory receptor 116	protein-coding	0.631698973021466	0.501996725494213	0.847357102379521	0.948488903621015	1.26301863881008	1.28807171471607	0.494687510493826	0.486586196156077	1.03096856789413	0.532762959279089	1
Merged-chr10-23787277-4	chr10	23787175	23787375	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011295)	promoter-TSS (NM_011295)	-66.0	NM_011295	20042.0	Mm.371846	NM_011295	ENSMUSG00000061983	Rps12	-	ribosomal protein S12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-33274028-2	chr5	33273978	33274178	+	941.400024	f0_balb.idr|f0_c57.idr	intron (NM_001198860, intron 1 of 9)	intron (NM_001198860, intron 1 of 9)	926.0	NM_001310535	13016.0	Mm.7286	NM_013502	ENSMUSG00000037373	Ctbp1	BARS|CtBP3/BARS|D4S115h|D5H4S115|D5H4S115E	C-terminal binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-31801263-2	chr2	31801163	31801363	+	765.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001283045, exon 11 of 11)	exon (NM_001283045, exon 11 of 11)	9317.0	NM_183424	227717.0	Mm.185027	NM_183424	ENSMUSG00000043102	Qrfp	P518	pyroglutamylated RFamide peptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-55823747-1	chr4	55823647	55823847	+	600.0	f0_balb.idr	Intergenic	B4|SINE|B4	-291272.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-31017645-2	chr13	31017545	31017745	+	671.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-43598.0	NM_025588	66482.0	Mm.293510	NM_025588	ENSMUSG00000021357	Exoc2	2410030I24Rik|AI648199|Sec5|Sec5l1	exocyst complex component 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-104469086-3	chr11	104468989	104469189	+	938.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359634)	promoter-TSS (NM_001359634)	-228.0	NM_001359634	76719.0	Mm.136418	NM_001081045	ENSMUSG00000018412	Kansl1	1700081L11Rik|9430041J06Rik|mKIAA1267	KAT8 regulatory NSL complex subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30469902-3	chr2	30469814	30470014	+	829.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4285.0	NM_030244	72500.0	Mm.295464	NM_030244	ENSMUSG00000089762	Ier5l	2610524G09Rik	immediate early response 5-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36276820-2	chr1	36276720	36276920	+	899.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-3395.0	NM_153408	214854.0	Mm.389110	NM_153408	ENSMUSG00000047180	Neurl3	2010300P06Rik|Lincr	neuralized E3 ubiquitin protein ligase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-58711144-2	chr1	58711044	58711244	+	727.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289704)	promoter-TSS (NM_001289704)	-347.0	NR_149257	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-65421685-4	chr7	65421581	65421781	+	834.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50437.0	NM_009386	21872.0	Mm.4342	NM_009386	ENSMUSG00000030516	Tjp1	ZO1	tight junction protein 1	protein-coding	0.510824269409519	1.21741449007543	2.17838025570419	0.533661497794075	1.17942228657058	0.567344229876111	1.17354248181405	0.536005246971504	-1.46136986906838	0.358890124796151	0.856306289008338
Merged-chr6-113680198-4	chr6	113680122	113680322	+	975.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 8 of 11)	intron (NM_001113553, intron 8 of 11)	-16828.0	NM_001347356	381801.0	Mm.333322	NM_001033463	ENSMUSG00000056952	Tatdn2	AI646012|mKIAA0218	TatD DNase domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-63806755-4	chr11	63806634	63806834	+	931.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	115550.0	NM_018805	54710.0	Mm.274426	NM_018805	ENSMUSG00000070407	Hs3st3b1	3-OST-3B|3OST3B1|3Ost3b|AU041882|AW536289|Hs3st3b|m3-OST-3B	heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	protein-coding	3.16290675464601	3.69327914293475	4.21963172930179	2.78968529238078	2.76552024958524	1.62969829258258	2.48322028630757	2.91539865812907	-1.74060976824386	0.0140318219401421	0.138600822972963
Merged-chr1-50962775-1	chr1	50962675	50962875	+	606.0	f0_balb.idr	intron (NM_019790, intron 4 of 9)	intron (NM_019790, intron 4 of 9)	35252.0	NM_019790	56363.0	Mm.245154	NM_019790	ENSMUSG00000026109	Tmeff2	4832418D20Rik|7630402F16Rik|TR-2	transmembrane protein with EGF-like and two follistatin-like domains 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-8084133-2	chr14	8084033	8084233	+	558.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025938, intron 3 of 5)	intron (NM_025938, intron 3 of 5)	3820.0	NM_025938	67053.0	Mm.210048	NM_025938	ENSMUSG00000023156	Rpp14	2610511E03Rik|AA682089	ribonuclease P 14 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4630138-4	chr16	4630014	4630214	+	864.404175	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030205, intron 23 of 27)	intron (NM_030205, intron 23 of 27)	-5168.0	NM_025571	66449.0	Mm.354760	NM_025571	ENSMUSG00000014301	Pam16	2010110I09Rik|AV006767|CGI-136|Magmas|Tim16|Timm16	presequence translocase-asssociated motor 16 homolog (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-114875273-4	chr6	114875171	114875371	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356371, intron 3 of 5)	intron (NM_001356371, intron 3 of 5)	46550.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-105018130-3	chr14	105018029	105018229	+	797.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	96547.0	NR_040628	100502987.0	Mm.124957	NR_040628		Gm17066	-	predicted gene 17066	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-34876199-4	chr6	34876142	34876342	+	913.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199145, intron 2 of 3)	intron (NM_199145, intron 2 of 3)	1823.0	NM_199145	78412.0	Mm.248440	NM_199145	ENSMUSG00000046806	3110062M04Rik	AL023049|Cyren|Mri	RIKEN cDNA 3110062M04 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-38443717-3	chr18	38443609	38443809	+	884.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355749, intron 2 of 7)	intron (NM_001355749, intron 2 of 7)	24802.0	NM_001355749	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-74876713-4	chr18	74876613	74876813	+	816.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	84550.0	NM_010720	16891.0	Mm.299647	NM_010720	ENSMUSG00000053846	Lipg	3110013K01Rik|EL|lipase|mEDL	lipase, endothelial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-29867858-2	chr2	29867758	29867958	+	956.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1636.0	NM_207298	99151.0	Mm.296336	NM_207298	ENSMUSG00000039787	Cercam	2600006K01Rik|AL024097|Ceecam1	cerebral endothelial cell adhesion molecule	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-134558045-3	chr4	134557913	134558113	+	976.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5847.0	NM_029100	74777.0	Mm.29773	NM_029100	ENSMUSG00000050989	Selenon	1110019I12Rik|AI414492|SelN|Sepn1	selenoprotein N	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-82350061-2	chr15	82349961	82350161	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_026914)	TTS (NM_026914)	4015.0	NM_026914	69029.0	Mm.260042	NM_026914	ENSMUSG00000022452	Smdt1	1500032L24Rik|Emre	single-pass membrane protein with aspartate rich tail 1	protein-coding	-0.615199253409485	-0.847850756076199	-0.852543267469836	-0.704572031078934	-0.609365715699889	-0.84534768159575	-0.852001820715513	-0.702115704238587	0.0371181303275201	0.98909404214881	1
Merged-chr6-39447995-4	chr6	39447877	39448077	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	27599.0	NR_152168	621427.0	Mm.389742	NR_152168	ENSMUSG00000068601	Gm10244	Anmkrn1	predicted gene 10244	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-4256594-4	chr18	4256481	4256681	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	90749.0	NM_026092	67328.0	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-116892634-2	chr2	116892534	116892734	+	656.125	f1_balb.idr|f1_c57bl6.idr	TTS (NM_026104)	TTS (NM_026104)	-7518.0	NR_040336	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-19981218-2	chr16	19981118	19981318	+	782.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_183390, intron 1 of 6)	intron (NM_183390, intron 1 of 6)	1831.0	NM_183390	239743.0	Mm.86699	NM_183390	ENSMUSG00000043008	Klhl6	-	kelch-like 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27932525-3	chr17	27932425	27932625	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181413, intron 1 of 24)	URR1A|DNA|hAT-Charlie	23219.0	NM_181413	224650.0	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	3.24424686190072	3.02096034387887	2.24889315735566	3.49675406307386	3.81786966010957	4.07828449629075	3.06197079181355	4.04582214704495	1.11344024597322	0.0584477938485085	0.357176552085435
Merged-chr2-5477076-1	chr2	5476976	5477176	+	678.0	f1_c57bl6.idr	intron (NM_001290375, intron 2 of 10)	intron (NM_001290375, intron 2 of 10)	97686.0	NR_030601	100124465.0		NR_030601	ENSMUSG00000078031	Mir466d	Mirn466d	microRNA 466d	ncRNA	-0.200568666196312	1.09785345324031	-0.183100980425799	-0.189582498806984	-0.198915848810781	0.448363933170829	-0.18126612456482	-0.188443008318227	-1.5828797107009	0.497915095421535	1
Merged-chr10-84409069-4	chr10	84408969	84409169	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004363, intron 2 of 6)	intron (NM_001004363, intron 2 of 6)	31402.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76305923-2	chr15	76305823	76306023	+	573.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153122, intron 3 of 26)	intron (NM_153122, intron 3 of 26)	1322.0	NM_153122	75475.0	Mm.322738	NM_153122	ENSMUSG00000022562	Oplah	1700010G02Rik	5-oxoprolinase (ATP-hydrolysing)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-19627464-7	chr2	19627406	19627606	+	921.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30391.0	NR_033642	100041244.0	Mm.407223	NR_033642		Gm3230	-	predicted gene 3230	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-160660856-1	chr2	160660756	160660956	+	602.0	f1_c57bl6.idr	intron (NM_009408, intron 2 of 20)	intron (NM_009408, intron 2 of 20)	14959.0	NM_009408	21969.0	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	1.42785834505122	1.13522877668151	0.579725402581247	1.16644229318605	0.559730600312784	0.592671629037329	0.58206761283086	1.37534082353773	-1.22932579770173	0.464911306276269	0.922521920152562
Merged-chr8-84660182-4	chr8	84660106	84660306	+	973.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	2646.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-46595330-2	chr18	46595230	46595430	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025698, intron 1 of 2)	MER68C|LTR|ERVL	2205.0	NM_025698	66676.0	Mm.296043	NM_025698	ENSMUSG00000033184	Tmed7	3930401E15Rik|5830493P14Rik|AU044611|AW545765|TRAM	transmembrane p24 trafficking protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-45363641-4	chr19	45363531	45363731	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009771)	promoter-TSS (NM_009771)	-103.0	NM_001360122	12234.0	Mm.119717	NM_009771	ENSMUSG00000025217	Btrc	Beta-Trcp1|E3RS-IkappaB|E3RSIkappaB|FWD1|Fbw1a|HOS|SCF b-TRCP|Slimb|b-TrCP|beta-TrCP	beta-transducin repeat containing protein	protein-coding	5.12909050716868	4.91233653014612	5.07307082135319	4.87684578450467	4.88695039427053	3.50627043028271	5.46978036706066	4.131587872314	-0.36407926889658	0.382309462854756	0.873396688145393
Merged-chr5-113643290-2	chr5	113643190	113643390	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359060, intron 1 of 4)	intron (NM_001359060, intron 1 of 4)	313.0	NM_001359060	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-84061829-4	chr17	84061722	84061922	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1G1|LTR|ERVL-MaLR	-16838.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-136085558-4	chr5	136085461	136085661	+	897.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039103, intron 1 of 19)	intron (NM_001039103, intron 1 of 19)	1645.0	NM_001039103	54153.0	Mm.290655	NM_133914	ENSMUSG00000004952	Rasa4	AA793972|AW112107|BB079060|CAPRI|GAPL	RAS p21 protein activator 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-161400349-3	chr1	161400243	161400443	+	668.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009452, intron 1 of 2)	intron (NM_009452, intron 1 of 2)	4905.0	NM_009452	22164.0	Mm.4994	NM_009452	ENSMUSG00000026700	Tnfsf4	Ath-1|Ath1|CD134L|OX-40L|Ox40l|TXGP1|Tnlg2b|Txgp1l|gp34	tumor necrosis factor (ligand) superfamily, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-32411443-1	chr4	32411343	32411543	+	619.0	f0_balb.idr	Intergenic	Intergenic	-5992.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-103005568-2	chr14	103005468	103005668	+	679.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_045657, intron 2 of 2)	intron (NR_045657, intron 2 of 2)	-22931.0	NM_177715	239217.0	Mm.246466	NM_177715	ENSMUSG00000098557	Kctd12	AU046135|AW538430|Pfet1|Pfetin	potassium channel tetramerisation domain containing 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-41563604-4	chr5	41563514	41563714	+	881.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	144077.0	NM_001310592	100972.0	Mm.41555	NM_027295	ENSMUSG00000029128	Rab28	2700023P08Rik|AW496496	RAB28, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-92729787-2	chr7	92729687	92729887	+	755.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11672.0	NR_015510	666737.0	Mm.473620	NR_015510	ENSMUSG00000074024	4632427E13Rik	AU015482	RIKEN cDNA 4632427E13 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21237650-4	chr9	21237526	21237726	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_016679, exon 1 of 5)	exon (NM_016679, exon 1 of 5)	1706.0	NM_016679	50868.0	Mm.248266	NM_016679	ENSMUSG00000003308	Keap1	INRF2|mKIAA0132	kelch-like ECH-associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26663716-2	chr17	26663614	26663814	+	650.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12682.0	NM_025272	11974.0	Mm.22602	NM_025272	ENSMUSG00000015575	Atp6v0e	Atp6k|Atp6v0e1|M9.2	ATPase, H+ transporting, lysosomal V0 subunit E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-8367081-2	chr5	8366981	8367181	+	667.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001007220, intron 2 of 28)	intron (NM_001007220, intron 2 of 28)	1079.0	NM_001007221	11496.0	Mm.275895	NM_001007220	ENSMUSG00000040537	Adam22	2900022I03Rik|AI854032|MDC2	a disintegrin and metallopeptidase domain 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-29237720-4	chr7	29237616	29237816	+	904.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001110201)	promoter-TSS (NM_001110201)	122.0	NM_001357668	77254.0	Mm.36699	NM_029887	ENSMUSG00000030588	Yif1b	9430029K10Rik|Yip1b	Yip1 interacting factor homolog B (S. cerevisiae)	protein-coding	3.73307374145263	3.22234595307417	3.47122119488277	3.3765781036575	3.55554284184994	3.24596154067895	3.13843252454674	2.37868857815267	-0.512478698317514	0.388600642262259	0.878378015422492
Merged-chr4-59265839-4	chr4	59265762	59265962	+	968.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_105031, intron 3 of 3)	intron (NR_105031, intron 3 of 3)	5811.0	NR_105031	101055769.0	Mm.421401	NR_105031		Gm12596	-	predicted gene 12596	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-136803280-2	chr6	136803164	136803364	+	825.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_175652)	TTS (NM_175652)	1167.0	NM_175652	320332.0	Mm.246720	NM_175652	ENSMUSG00000096010	Hist4h4	B130044J01Rik	histone cluster 4, H4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-130799238-9	chr4	130799213	130799413	+	883.7222289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011520, intron 1 of 4)	intron (NM_011520, intron 1 of 4)	6776.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-57354874-4	chr19	57354790	57354990	+	736.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040316, intron 1 of 2)	intron (NR_040316, intron 1 of 2)	6009.0	NR_040316	320879.0	Mm.375089	NR_040316	ENSMUSG00000097785	B230217O12Rik	-	RIKEN cDNA B230217O12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-80902870-3	chr13	80902774	80902974	+	582.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16779.0	NR_153411	105171.0	Mm.423137	NM_001042591	ENSMUSG00000074794	Arrdc3	AI450344|mKIAA1376	arrestin domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-18575274-1	chr19	18575174	18575374	+	593.0	f1_c57bl6.idr	Intergenic	Intergenic	56539.0	NM_017375	20409.0	Mm.172222	NM_017375	ENSMUSG00000024725	Ostf1	C78236|SH3P2|Sh3d3	osteoclast stimulating factor 1	protein-coding	1.67302005822339	2.14544208650643	2.56836283078756	1.05079143256756	2.09232010014503	1.09833642388131	1.83888828615946	1.28353671897959	-0.915730649431783	0.433341313104072	0.905745034524566
Merged-chr8-84640490-1	chr8	84640390	84640590	+	543.0	f1_c57bl6.idr	TTS (NM_007578)	TTS (NM_007578)	22362.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	0.195337651019191	0.697132382644677	0.221510148216873	1.73372875894803	0.197832149533489	0.236461312010338	0.224236258631041	0.918213048815885	-2.00144568200665	0.294527539369884	0.798191705447
Merged-chr3-40705244-4	chr3	40705132	40705332	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_175515)	TTS (NM_175515)	-3639.0	NM_178386	73333.0	Mm.78691	NM_178386	ENSMUSG00000069041	Slc25a31	1700034J06Rik|Ant4|Sfec	solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 31	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107626320-1	chr9	107626220	107626420	+	628.0	f1_balb.idr	intron (NM_008138, intron 1 of 8)	intron (NM_008138, intron 1 of 8)	9022.0	NM_008138	14678.0	Mm.196464	NM_008138	ENSMUSG00000032562	Gnai2	C76432|Galphai2|Gia|Gnai-2	guanine nucleotide binding protein (G protein), alpha inhibiting 2	protein-coding	2.07068836135388	1.24036912640911	2.4609548993646	1.42807938851502	2.36339710138016	2.83035587002846	2.15383528052844	1.43465854520779	0.922097209298271	0.368741130562997	0.862969327274677
Merged-chr7-130648281-4	chr7	130648184	130648384	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004468, intron 3 of 21)	intron (NM_001004468, intron 3 of 21)	-44272.0	NM_001347637	57752.0	Mm.86322	NM_021314	ENSMUSG00000030852	Tacc2	mKIAA4180	transforming, acidic coiled-coil containing protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-7925413-4	chr17	7925298	7925498	+	982.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145968)	promoter-TSS (NM_145968)	-602.0	NM_145968	72536.0	Mm.119680	NM_145968	ENSMUSG00000033450	Tagap	2610315E15Rik|TRD|Tcd-1|Tcd1|Tcd1a|tcs-1|tcs1	T cell activation Rho GTPase activating protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-65319442-2	chr7	65319342	65319542	+	695.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009386, intron 15 of 27)	MER20|DNA|hAT-Charlie	51802.0	NM_001163574	21872.0	Mm.4342	NM_009386	ENSMUSG00000030516	Tjp1	ZO1	tight junction protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134366089-3	chr6	134365957	134366157	+	723.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153848, intron 3 of 8)	intron (NR_153848, intron 3 of 8)	-30272.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	0.828395406533227	0.136354085924978	1.1436434009543	0.122466929510626	0.42340020298599	0.138103396863192	0.130274998177798	0.12353250907129	-2.80474119688462	0.185213456416832	1
Merged-chr6-72851758-3	chr6	72851660	72851860	+	925.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019715, intron 3 of 6)	intron (NM_019715, intron 3 of 6)	47532.0	NM_001347231	74287.0	Mm.29194	NM_019715	ENSMUSG00000055239	Kcmf1	1700094M07Rik|Debt91|Pmcf	potassium channel modulatory factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-58408189-4	chr10	58408097	58408297	+	938.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359116, intron 3 of 9)	MTD|LTR|ERVL-MaLR	13824.0	NM_001346676	110829.0	Mm.57734	NM_026148	ENSMUSG00000019920	Lims1	2310016J22Rik|4921524A02Rik|AI507642|AU021743|AW551584|C430041B13Rik|Lims1l|PINCH|PINCH1	LIM and senescent cell antigen-like domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-128842095-2	chr6	128841995	128842195	+	646.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15780.0	NM_030599	80782.0	Mm.6180	NM_030599	ENSMUSG00000079298	Klrb1b	Klrb1d|Ly55b|Ly55d|NKR-P1B|NKR-P1D|Nkrp1-b|Nkrp1b|Nkrp1d|ly-55b|ly-55d	killer cell lectin-like receptor subfamily B member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34926494-2	chr17	34926394	34926594	+	824.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_023557, intron 13 of 20)	ID_B1|SINE|B4	-4759.0	NM_010893	18010.0	Mm.8856	NM_010893	ENSMUSG00000007038	Neu1	AA407268|AA407316|Aglp|Apl|Bat-7|Bat7|G9|Map-2|Neu|Neu-1	neuraminidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-98283678-4	chr12	98283583	98283783	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15048.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-73592020-2	chr15	73591920	73592120	+	592.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357747, intron 2 of 7)	intron (NM_001357747, intron 2 of 7)	4506.0	NM_001168255	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-44362811-2	chr16	44362711	44362911	+	939.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144550, intron 4 of 17)	L1Md_F2|LINE|L1	15410.0	NM_144550	212514.0	Mm.24035	NM_144550	ENSMUSG00000043065	Spice1	Ccdc52|D16Ertd480e	spindle and centriole associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-13889103-2	chr13	13888990	13889190	+	696.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_T|LINE|L1	-65584.0	NM_001362404	97884.0	Mm.21686	NM_178640	ENSMUSG00000039242	B3galnt2	A930105D20Rik|C80633|D230016N13Rik	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28519360-2	chr17	28519260	28519460	+	678.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11501.0	NM_026290	67645.0	Mm.46170	NM_026290	ENSMUSG00000024223	Armc12	4930511I11Rik|AV041658	armadillo repeat containing 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-130788498-2	chr4	130788398	130788598	+	898.4166869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4039.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119388849-2	chr11	119388749	119388949	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-1623.0	NR_035453	100316690.0		NR_035453	ENSMUSG00000088015	Mir1932	mir-1932|mmu-mir-1932	microRNA 1932	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127545464-6	chr10	127545309	127545509	+	716.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 75 of 88)	intron (NM_008512, intron 75 of 88)	-10850.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-54393399-3	chr14	54393290	54393490	+	878.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011405, intron 4 of 11)	intron (NM_011405, intron 4 of 11)	16082.0	NM_001253680	20540.0	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	0.296844273945874	0.160391557209962	0.152896237201458	0.147070704538395	1.00324267733088	0.951842481404944	0.353498979099482	0.148091176079033	3.52123428537648	0.0752434433798397	1
Merged-chr9-103215311-1	chr9	103215211	103215411	+	616.0	f1_c57bl6.idr	intron (NM_133977, intron 13 of 16)	intron (NM_133977, intron 13 of 16)	-13246.0	NM_009275	20818.0	Mm.273053	NM_009275	ENSMUSG00000032553	Srprb	AA409543	signal recognition particle receptor, B subunit	protein-coding	-1.13129152895393	-0.760314410582534	-1.11939102144509	-1.12796902636669	-1.1307976245896	-0.753160406462703	-1.11683883442949	-1.12699414366937	0.0387695613834025	0.99058038935327	1
Merged-chr3-98227263-4	chr3	98227178	98227378	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026328, intron 2 of 5)	MIR|SINE|MIR	5122.0	NM_026328	67709.0	Mm.46306	NM_026328	ENSMUSG00000027876	Reg4	2010002L15Rik|GISP|RELP	regenerating islet-derived family, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-161489857-2	chr1	161489757	161489957	+	790.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4800.0	NM_183391	240873.0	Mm.276823	NM_183391	ENSMUSG00000066755	Tnfsf18	Gitrl|Tnlg2a	tumor necrosis factor (ligand) superfamily, member 18	protein-coding	0.333824748731117	0.0562399444058956	1.05492872436881	0.0434512718134521	0.0354764568056273	0.0578529847125946	0.050638010710422	0.640362353741799	-1.35217499649217	0.527872622727507	1
Merged-chr12-24831573-4	chr12	24831531	24831731	+	999.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001083341)	promoter-TSS (NM_001083341)	32.0	NM_001083341	67216.0	Mm.167671	NM_026037	ENSMUSG00000020646	Mboat2	2810049G06Rik|AU022889|AW547221|LPCAT4|Moact2|Oact2	membrane bound O-acyltransferase domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-136570221-2	chr1	136570121	136570321	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54680.0	NM_177643	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-143919529-6	chr5	143919442	143919642	+	834.944458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008886, exon 8 of 15)	exon (NM_008886, exon 8 of 15)	9541.0	NM_008886	18861.0	Mm.2950	NM_008886	ENSMUSG00000075569	Pms2	AW555130|Pmsl2	PMS1 homolog2, mismatch repair system component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-3139518-2	chr11	3139411	3139611	+	1000.0	f0_balb.idr|f1_balb.idr	intron (NM_030207, intron 22 of 32)	MTA_Mm|LTR|ERVL-MaLR	15490.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-40068888-4	chr10	40068791	40068991	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 3 of 5)	intron (NM_001114332, intron 3 of 5)	-43623.0	NM_144821	215929.0	Mm.55513	NM_144821	ENSMUSG00000038522	Mfsd4b1	AI317395|AI482555|Naglt1a	major facilitator superfamily domain containing 4B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-7828025-2	chr9	7827925	7828125	+	904.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007465, intron 2 of 7)	MTC|LTR|ERVL-MaLR	8781.0	NM_001291503	11797.0	Mm.335659	NM_007465	ENSMUSG00000057367	Birc2	AW146227|Api1|Api2|Birc3|C-IAP1|C330006D17Rik|HIAP1|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF48|cIAP1|cIAP2|mcIAP1	baculoviral IAP repeat-containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-21571987-4	chr11	21571883	21572083	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008618)	promoter-TSS (NM_008618)	-49.0	NM_001316675	17449.0	Mm.212703	NM_008618	ENSMUSG00000020321	Mdh1	B230377B03Rik|D17921|MDH-s|MDHA|Mor-2|Mor2	malate dehydrogenase 1, NAD (soluble)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-36054723-3	chr12	36054599	36054799	+	570.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12221.0	NM_025359	66109.0	Mm.254663	NM_025359	ENSMUSG00000020577	Tspan13	1100001I23Rik|NET-6|Tm4sf13	tetraspanin 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-119614344-2	chr13	119614244	119614444	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9475.0	NM_020279	56838.0	Mm.143745	NM_020279	ENSMUSG00000074715	Ccl28	CCK1|MEC|Scya28	chemokine (C-C motif) ligand 28	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165901247-3	chr2	165901148	165901348	+	830.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-16410.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101337785-2	chr15	101337685	101337885	+	655.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31567.0	NR_035462	100316694.0		NR_035462	ENSMUSG00000088459	Mir1941	mmu-mir-1941	microRNA 1941	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-95637271-1	chr4	95637171	95637371	+	749.0	f0_balb.idr	intron (NM_029347, intron 5 of 10)	intron (NM_029347, intron 5 of 10)	57850.0	NM_029347	75578.0	Mm.276098	NM_029347	ENSMUSG00000028573	Fggy	2310009E04Rik	FGGY carbohydrate kinase domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-45921147-2	chr1	45921047	45921247	+	943.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016917, intron 3 of 7)	intron (NM_016917, intron 3 of 7)	4447.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-54941338-4	chr6	54941243	54941443	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001171007, intron 4 of 11)	RLTR28|LTR|ERVL	30318.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118255690-2	chr11	118255612	118255812	+	577.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7120.0	NM_011180	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75141265-4	chr11	75141190	75141390	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001002764, intron 14 of 18)	intron (NM_001002764, intron 14 of 18)	26862.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-39881289-4	chr13	39881194	39881394	+	959.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	406717.0	NM_172143	218165.0	Mm.364096	NM_172143	ENSMUSG00000047094	Ofcc1	opo	orofacial cleft 1 candidate 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-18957301-2	chr11	18957201	18957401	+	564.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010789, intron 7 of 11)	intron (NM_010789, intron 7 of 11)	61668.0	NM_001193271	17268.0	Mm.356578	NM_010789	ENSMUSG00000020160	Meis1	C530044H18Rik|Evi8	Meis homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-58445535-4	chr1	58445418	58445618	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027351)	promoter-TSS (NM_027351)	-32.0	NM_027351	70225.0	Mm.340195	NM_027351	ENSMUSG00000026035	Ppil3	2310076N22Rik|2510026K04Rik|Cyp10l	peptidylprolyl isomerase (cyclophilin)-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-90251716-4	chr3	90251645	90251845	+	960.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013901, exon 4 of 4)	exon (NM_013901, exon 4 of 4)	-2113.0	NR_151631	74343.0	Mm.35627	NM_028881	ENSMUSG00000027936	Crtc2	4632407F12Rik|Torc2	CREB regulated transcription coactivator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65165158-2	chr9	65165058	65165258	+	706.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357257, intron 2 of 13)	intron (NM_001357257, intron 2 of 13)	24004.0	NM_001357257	19289.0	Mm.41529	NM_008988	ENSMUSG00000032394	Igdcc3	2810401C09Rik|AI851425|Punc|WI-14920	immunoglobulin superfamily, DCC subclass, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131278747-2	chr1	131278647	131278847	+	596.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_019777, exon 2 of 22)	5' UTR (NM_019777, exon 2 of 22)	816.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70776778-4	chr8	70776680	70776880	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008841)	promoter-TSS (NM_008841)	-68.0	NM_008841	18709.0	Mm.12945	NM_008841	ENSMUSG00000031834	Pik3r2	p85beta	phosphoinositide-3-kinase regulatory subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127581231-2	chr10	127581125	127581325	+	782.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 20 of 88)	intron (NM_008512, intron 20 of 88)	39923.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	0.238218320999609	-0.144722141669669	-0.150374871333179	-0.154753859778112	0.809101453726037	-0.143451415524189	0.0440022213218058	-0.153987718549033	1.90079415426402	0.412721985356804	1
Merged-chr16-18697389-2	chr16	18697289	18697489	+	609.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-67451.0	NM_213614	18951.0	Mm.20365	NM_213614	ENSMUSG00000072214	Sept5	Cdcrel-1|Cdcrel1|Pnutl1	septin 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78926678-3	chr15	78926576	78926776	+	698.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008495)	promoter-TSS (NM_008495)	-49.0	NM_008495	16852.0	Mm.43831	NM_008495	ENSMUSG00000068220	Lgals1	AA410090|Gal-1|Galbp|L-14.5|L14|Lect14|galectin-1	lectin, galactose binding, soluble 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83538695-2	chr11	83538595	83538795	+	642.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-8177.0	NM_013653	20304.0	Mm.284248	NM_013653	ENSMUSG00000035042	Ccl5	MuRantes|RANTES|SISd|Scya5|TCP228	chemokine (C-C motif) ligand 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36566563-4	chr1	36566419	36566619	+	705.287476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001126046, intron 12 of 14)	intron (NM_001126046, intron 12 of 14)	-8138.0	NM_001126047	20353.0	Mm.29558	NM_001126047	ENSMUSG00000026121	Sema4c	AI426163|M-Sema F|Semacl1|Semaf|Semai|sema I	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-24197521-2	chr15	24197421	24197621	+	587.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3_Mus|LINE|L1	1161058.0	NM_001081299	320865.0	Mm.241965	NM_001081299	ENSMUSG00000040420	Cdh18	B230220E17Rik|Cdh14l|Tg(GFAP-APOE_i4)1Hol	cadherin 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-77013658-4	chr16	77013574	77013774	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013918)	promoter-TSS (NM_013918)	-395.0	NM_013918	30940.0	Mm.40986	NM_013918	ENSMUSG00000022867	Usp25	-	ubiquitin specific peptidase 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-33122591-2	chr11	33122491	33122691	+	782.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008005, intron 4 of 4)	intron (NM_008005, intron 4 of 4)	24809.0	NM_008005	14172.0	Mm.339812	NM_008005	ENSMUSG00000057967	Fgf18	D130055P09Rik|FGF-18	fibroblast growth factor 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-60198106-2	chr11	60198006	60198206	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001358314)	TTS (NM_001358314)	2511.0	NR_105886	102465555.0		NR_105886	ENSMUSG00000098547	Mir6921	Gm27352|mmu-mir-6921	microRNA 6921	ncRNA	-0.662826441749988	-1.00555184936033	-1.01675512286785	-1.01992432642343	-0.654846858003193	-1.00312405325568	-1.01421894731451	-1.01959449741028	0.0418081237259606	0.989738874530268	1
Merged-chr4-139579634-3	chr4	139579533	139579733	+	862.055542	f0_balb.idr|f0_c57.idr|f1_balb.idr	intron (NM_001205173, intron 1 of 8)	intron (NM_001205173, intron 1 of 8)	4913.0	NM_001205173	212632.0	Mm.30464	NM_183148	ENSMUSG00000041025	Iffo2	C79267	intermediate filament family orphan 2	protein-coding	3.27717552539304	1.78955016385558	2.31513927702688	2.51417527169874	3.25037626634552	1.50842228315868	3.39368406751165	2.64226183844061	0.523798459983357	0.543023925246641	0.955286497618918
Merged-chr1-157038015-1	chr1	157037915	157038115	+	849.0	f1_balb.idr	Intergenic	Intergenic	70635.0	NM_001305059	73435.0	Mm.116705	NM_028540	ENSMUSG00000026592	Tex35	1700057K13Rik	testis expressed 35	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-6872303-3	chr2	6872213	6872413	+	764.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347094)	promoter-TSS (NM_001347094)	-278.0	NM_001347094	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-122812944-2	chr6	122812844	122813044	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-7240.0	NM_021899	60611.0	Mm.87142	NM_021899	ENSMUSG00000003154	Foxj2	Fhx	forkhead box J2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-122570661-4	chr2	122570575	122570775	+	937.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40602.0	NM_025961	67092.0	Mm.29975	NM_025961	ENSMUSG00000027199	Gatm	1810003P21Rik|AI314789|AT	glycine amidinotransferase (L-arginine:glycine amidinotransferase)	protein-coding	3.91740726196022	3.90742411500353	3.07968874378129	4.21907047548084	4.18701426987699	4.15157196548223	3.64262389239517	4.42219576184364	0.394755265359436	0.406632571649104	0.891589472705765
Merged-chr11-85492594-6	chr11	85492614	85492814	+	893.055542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138681, intron 14 of 25)	intron (NM_138681, intron 14 of 25)	139550.0	NM_001166643	192197.0	Mm.209989	NM_138681	ENSMUSG00000059439	Bcas3	1500019F07Rik|2610028P08Rik|AU021018|BC028339|K20D4|rudhira	breast carcinoma amplified sequence 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-108758764-2	chr12	108758664	108758864	+	769.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-34547.0	NM_009537	22632.0	Mm.3868	NM_009537	ENSMUSG00000021264	Yy1	AW488674|NF-E1	YY1 transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-98631667-4	chr15	98631554	98631754	+	942.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001044741)	promoter-TSS (NM_001044741)	-674.0	NM_001044741	12297.0	Mm.3544	NM_007581	ENSMUSG00000003352	Cacnb3	Beta3|CAB3|Ca(v)beta3|Cchb3	calcium channel, voltage-dependent, beta 3 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-94066384-1	chr16	94066284	94066484	+	543.0	f0_balb.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-18876.0	NM_011377	20465.0	Mm.4775	NM_011377	ENSMUSG00000062713	Sim2	bHLHe15	single-minded family bHLH transcription factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-15904598-1	chr7	15904498	15904698	+	546.0	f1_c57bl6.idr	TTS (NM_001145190)	TTS (NM_001145190)	2952.0	NM_001145190	546024.0	Mm.259041	NM_001033638	ENSMUSG00000074365	Crxos	AA606869|AY590891|Crxos1|Egam1	cone-rod homeobox, opposite strand	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-44927172-4	chr2	44927091	44927291	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-65569.0	NM_172662	227835.0	Mm.314312	NM_172662	ENSMUSG00000036890	Gtdc1	E330008O22Rik	glycosyltransferase-like domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-115582275-4	chr8	115582155	115582355	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	124639.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-124347369-3	chr8	124347315	124347515	+	843.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	86521.0	NM_171824	209966.0	Mm.234233	NM_171824	ENSMUSG00000050751	Pgbd5	2900019M05Rik|AI854313	piggyBac transposable element derived 5	protein-coding	1.50024436049402	1.67067753133947	1.86151993017294	1.80831101423034	1.51146293499762	1.82093386557287	1.7600916279615	1.07302834812564	-0.469895884699324	0.671418623643189	0.994059363767912
Merged-chr11-83066878-4	chr11	83066771	83066971	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011408, intron 1 of 1)	intron (NM_011408, intron 1 of 1)	1759.0	NM_011408	20556.0	Mm.278689	NM_011408	ENSMUSG00000072620	Slfn2	Shlf2	schlafen 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-181861072-7	chr1	181860976	181861176	+	907.714294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18675.0	NM_133815	98386.0	Mm.4538	NM_133815	ENSMUSG00000004880	Lbr	AI505894|ic	lamin B receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-98703813-3	chr12	98703719	98703919	+	845.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146199, intron 8 of 18)	intron (NM_001146199, intron 8 of 18)	30826.0	NM_011877	24000.0	Mm.4420	NM_011877	ENSMUSG00000021009	Ptpn21	PTPD1|PTPRL10	protein tyrosine phosphatase, non-receptor type 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167650340-3	chr2	167650262	167650462	+	770.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145538, intron 2 of 5)	intron (NM_145538, intron 2 of 5)	11182.0	NM_145538	407243.0	Mm.4863	NM_145538	ENSMUSG00000090213	Tmem189	AI840826|Kua	transmembrane protein 189	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-89257651-3	chr6	89257525	89257725	+	915.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Charlie8|DNA|hAT-Charlie	28100.0	NR_131021	75131.0	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	Gm44205	RIKEN cDNA 4930512J16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117836530-2	chr11	117836430	117836630	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027827, intron 10 of 10)	intron (NM_027827, intron 10 of 10)	-10516.0	NM_009387	21877.0	Mm.2661	NM_009387	ENSMUSG00000025574	Tk1	D530002A18Rik|Tk-1|Tk1a|Tk1b	thymidine kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-66859150-2	chr10	66859050	66859250	+	557.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	61234.0	NR_138560	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71526691-1	chr8	71526591	71526791	+	546.0	f1_c57bl6.idr	Intergenic	Intergenic	10746.0	NM_198095	69550.0	Mm.260325	NM_198095	ENSMUSG00000046718	Bst2	2310015I10Rik|Bst-2|C87040|CD317|DAMP-1|GREG	bone marrow stromal cell antigen 2	protein-coding	-0.195086640270443	0.734665501483398	0.56959227620861	-0.186649707587838	-0.193824381413512	-0.173712337406152	-0.180190454319017	-0.185768353349219	-4.05052506720737	0.0879572642997291	1
Merged-chr12-40220126-2	chr12	40220026	40220226	+	971.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013562, intron 1 of 11)	intron (NM_013562, intron 1 of 11)	2685.0	NR_035459	100316693.0		NR_035459	ENSMUSG00000089371	Mir1938	mir-1938|mmu-mir-1938	microRNA 1938	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-75929721-4	chr16	75929609	75929809	+	927.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20443.0	NM_023380	67742.0	Mm.131406	NM_023380	ENSMUSG00000022876	Samsn1	4930571B16Rik|930571B16Rik|Hacs1|SLy2	SAM domain, SH3 domain and nuclear localization signals, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-53333887-2	chr19	53333787	53333987	+	650.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001008543, intron 2 of 5)	intron (NM_001008543, intron 2 of 5)	3479.0	NM_001008543	17859.0	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-66463170-2	chr18	66463070	66463270	+	556.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021451, intron 2 of 2)	intron (NM_021451, intron 2 of 2)	4566.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-93421697-2	chr2	93421581	93421781	+	716.416626	f1_balb.idr|f1_c57bl6.idr	TTS (NR_105967)	TTS (NR_105967)	326.0	NR_105967	102465605.0		NR_105967	ENSMUSG00000099238	Mir7001	Gm27886|mmu-mir-7001	microRNA 7001	ncRNA	2.69931167861306	2.93695223848337	2.92434041387834	2.06192186774704	2.55458366112782	1.79275478511653	1.95462633001414	2.93544857373079	-0.602615969852875	0.460485841044175	0.920920511309258
Merged-chr1-172277326-4	chr1	172277225	172277425	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178405, intron 20 of 22)	intron (NM_178405, intron 20 of 22)	-18901.0	NM_013734	27222.0	Mm.482392	NM_013734	ENSMUSG00000007107	Atp1a4	-	ATPase, Na+/K+ transporting, alpha 4 polypeptide	protein-coding	4.47653496700034	5.59070958170894	4.78745504324355	5.0194207548586	5.38289981254612	5.59611105643284	5.34903080027713	5.40809773766052	0.486218165208691	0.127042896833651	0.55765634495493
Merged-chr5-33443235-3	chr5	33443133	33443333	+	848.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-9143.0	NM_011320	672284.0		NM_011320	ENSMUSG00000029112	Nkx1-1	Nkx-1.1|Sax2	NK1 homeobox 1	protein-coding	1.15081311839901	1.56385167572839	0.73688242253234	0.726771747554533	1.27388673038734	1.45780394191082	1.51425398355969	0.728547752284934	0.719037535985254	0.624946642303523	0.980912176761026
Merged-chr8-13784728-2	chr8	13784628	13784828	+	760.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025924)	promoter-TSS (NM_025924)	-887.0	NM_025924	67031.0	Mm.44858	NM_025924	ENSMUSG00000038398	Upf3a	2600001C03Rik|4930546M19Rik|RENT3A|UPF3	UPF3 regulator of nonsense transcripts homolog A (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-14244358-3	chr2	14244264	14244464	+	854.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008625, intron 3 of 29)	ID4|SINE|ID	14950.0	NM_008625	17533.0	Mm.2019	NM_008625	ENSMUSG00000026712	Mrc1	AW259686|CD206|MR	mannose receptor, C type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-161250787-2	chr1	161250693	161250893	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001303408, intron 1 of 5)	intron (NM_001303408, intron 1 of 5)	417.0	NM_007453	11758.0	Mm.186185	NM_007453	ENSMUSG00000026701	Prdx6	1-Cys Prx|1-cysPrx|9430088D19Rik|AA690119|Aop2|Brp-12|CP-3|GPx|Ltw-4|Ltw4|Lvtw-4|NSGPx|ORF06|Prdx5|aiPLA2	peroxiredoxin 6	protein-coding	0.676453757789426	0.315627564166022	0.986888220013297	0.941615719503868	0.44489345430828	0.516887369047438	0.310160119513236	0.304132551317896	-2.65206401157804	0.151253985319352	1
Merged-chr5-88637839-2	chr5	88637739	88637939	+	741.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359208, intron 12 of 13)	MTD|LTR|ERVL-MaLR	37741.0	NM_001098476	231413.0	Mm.332474	NM_178700	ENSMUSG00000044221	Grsf1	BB232551|C80280|D5Wsu31e	G-rich RNA sequence binding factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-84119886-2	chr6	84119786	84119986	+	583.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077694, intron 30 of 54)	intron (NM_001077694, intron 30 of 54)	100500.0	NM_021469	26903.0	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-8885765-4	chr13	8885628	8885828	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_145360, exon 1 of 5)	5' UTR (NM_145360, exon 1 of 5)	122.0	NM_145360	319554.0	Mm.29847	NM_145360	ENSMUSG00000058258	Idi1	4832416K17Rik|IPPI1	isopentenyl-diphosphate delta isomerase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-101448007-2	chr14	101447907	101448107	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081278, intron 17 of 18)	intron (NM_001081278, intron 17 of 18)	161184.0	NM_001081278	210789.0	Mm.320639	NM_173380	ENSMUSG00000033083	Tbc1d4	5930406J04Rik|A930035N22|AV295684|As160	TBC1 domain family, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19714367-2	chr7	19714267	19714467	+	824.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001109748, intron 1 of 8)	intron (NM_001109748, intron 1 of 8)	1062.0	NM_001109748	53333.0	Mm.61682	NM_016871	ENSMUSG00000002984	Tomm40	AW539759|Mom35|Tom40	translocase of outer mitochondrial membrane 40	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24734101-2	chr17	24734008	24734208	+	891.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_025425, intron 4 of 6)	intron (NM_025425, intron 4 of 6)	1423.0	NM_025425	66211.0	Mm.46198	NM_025425	ENSMUSG00000002500	Rpl3l	1110057H16Rik	ribosomal protein L3-like	protein-coding	2.1097594457398	1.36465052038524	1.32869753485268	1.96986737749145	2.12798315154459	1.37262267913385	1.33671318355882	1.98038632481677	0.0367964081571453	0.973244808617958	0.998431161219273
Merged-chr2-163777073-3	chr2	163776973	163777173	+	918.544434	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Arthur1|DNA|hAT-Tip100	-26834.0	NM_001272052	11486.0	Mm.388	NM_007398	ENSMUSG00000017697	Ada	-	adenosine deaminase	protein-coding	1.76113622614701	0.824643372778021	1.33767052166362	0.799869096616589	1.62897597580282	0.827740750053193	1.47891444249382	1.30413537528971	0.318580611091367	0.82332637522616	0.998431161219273
Merged-chr14-122983849-2	chr14	122983749	122983949	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360598)	promoter-TSS (NM_001360598)	-566.0	NR_153663	70551.0	Mm.271988	NM_028651	ENSMUSG00000041594	Tmtc4	4930403J22Rik|5730419O14Rik	transmembrane and tetratricopeptide repeat containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85465094-4	chr12	85464994	85465194	+	960.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8796.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-76677065-1	chr2	76676965	76677165	+	671.333313	f0_balb.idr	intron (NM_031256, intron 1 of 7)	intron (NM_031256, intron 1 of 7)	1750.0	NM_031256	83435.0	Mm.41636	NM_031256	ENSMUSG00000002733	Plekha3	FAPP1	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90486521-4	chr2	90486377	90486577	+	854.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	-7303.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	2.40508104018653	1.24175934119256	1.47833956062284	2.85008880622194	1.89186358259475	2.14219158097844	3.14825689763967	1.44434422355086	0.33445871003306	0.746074041039611	0.998431161219273
Merged-chr2-24335494-4	chr2	24335383	24335583	+	992.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1377.0	NM_031167	16181.0	Mm.882	NM_031167	ENSMUSG00000026981	Il1rn	F630041P17Rik|IL-1ra	interleukin 1 receptor antagonist	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153216070-2	chr2	153215970	153216170	+	604.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9371.0	NM_198617	241732.0	Mm.277243	NM_198617	ENSMUSG00000074671	Tspyl3	AW212607|Gm36	TSPY-like 3	protein-coding	-0.226235296896101	0.595109062818019	-0.213198233288771	-0.218068504042706	-0.225013795898844	0.608384863201147	-0.211812549537951	-0.217215065379025	0.0395006580732415	0.987233647591244	1
Merged-chr4-147343717-2	chr4	147343617	147343817	+	708.599976	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039209, intron 1 of 2)	intron (NM_001039209, intron 1 of 2)	167851.0	NM_001039209	195531.0	Mm.270762	NM_001039209	ENSMUSG00000078496	Zfp982	Gm13152	zinc finger protein 982	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126887494-3	chr8	126887467	126887667	+	820.6611330000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38547.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	2.08108372981687	3.09897727073029	2.39846737558981	2.19495655744321	2.62957100958783	2.94969756102597	1.44582064299662	2.84821824689603	0.16856005585638	0.844118395509303	0.998431161219273
Merged-chr9-64830225-4	chr9	64830142	64830342	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162917, intron 2 of 34)	intron (NM_001162917, intron 2 of 34)	19231.0	NM_001162917	102442.0	Mm.222473	NM_176935	ENSMUSG00000053641	Dennd4a	AI115600|AI851943|F730015K02Rik	DENN/MADD domain containing 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-52106924-4	chr14	52106821	52107021	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2900.0	NM_001360180	15381.0	Mm.427321	NM_016884	ENSMUSG00000060373	Hnrnpc	AL022939|D14Wsu171e|Hnrpc|Hnrpc1|Hnrpc2|hnRNPC1|hnRNPC2|hnrnp-C	heterogeneous nuclear ribonucleoprotein C	protein-coding	3.62956129470216	4.23296775457495	3.85773588213508	3.16954697350405	3.88462802601177	3.5138407192668	3.39569640857997	4.11872132137831	-0.00639692358387459	0.989992228706724	0.998431161219273
Merged-chr13-14618974-4	chr13	14618863	14619063	+	895.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008944, intron 3 of 7)	B3|SINE|B2	5721.0	NM_008944	19166.0	Mm.252255	NM_008944	ENSMUSG00000015671	Psma2	Lmpc3	proteasome (prosome, macropain) subunit, alpha type 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-88114350-2	chr17	88114250	88114450	+	718.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-11162.0	NM_001190356	225058.0	Mm.312053	NM_001190356		Gm4832	EG225058	predicted gene 4832	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-74991412-4	chr9	74991343	74991543	+	758.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153584, intron 1 of 11)	Lx10|LINE|L1	15332.0	NM_153584	235493.0	Mm.208955	NM_153584	ENSMUSG00000034858	Fam214a	6330415I01Rik|AI553555|C130047D21Rik|Kiaa1370|mKIAA1370	family with sequence similarity 214, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-52172503-1	chr9	52172403	52172603	+	810.0	f0_balb.idr	Intergenic	Intergenic	-4392.0	NM_001162921	244871.0	Mm.295686	NM_001162921	ENSMUSG00000035164	Zc3h12c	A230108E06|C230027N18Rik|mKIAA1726	zinc finger CCCH type containing 12C	protein-coding	1.48982437930492	1.98301444479543	1.24767875872541	1.21453134762455	2.47033951216761	1.0256100677137	2.49481933261091	1.22040258682608	1.26913396766668	0.274568276183605	0.778541872770812
Merged-chr8-115778631-4	chr8	115778538	115778738	+	828.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-71744.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-92511450-4	chr5	92511332	92511532	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A3|LTR|ERVL-MaLR	-5775.0	NM_007644	12492.0	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-102616131-4	chr14	102616023	102616223	+	843.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	366509.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-90655040-4	chr5	90654949	90655149	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14522.0	NM_001310656	73246.0	Mm.30172	NM_028478	ENSMUSG00000029370	Rassf6	1600016B17Rik	Ras association (RalGDS/AF-6) domain family member 6	protein-coding	4.18192682323096	3.94644675943397	4.93120153977164	4.53390928202055	4.35272027530658	4.05900219963541	5.0343082507705	4.46393744512716	0.0960864582503866	0.816772666215814	0.998431161219273
Merged-chr7-14534128-4	chr7	14534043	14534243	+	983.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045120, intron 12 of 12)	intron (NR_045120, intron 12 of 12)	28028.0	NM_001244031	627280.0	Mm.372763	NM_001039146	ENSMUSG00000100586	Vmn1r90	B430211C08Rik	vomeronasal 1 receptor 90	protein-coding	0.282630819964131	0.301384912475236	0.844389160857523	0.805505090086294	0.653381032093479	0.302773676093217	0.470449193500429	0.588202706640528	-0.522182178938022	0.77381230058989	1
Merged-chr14-100211287-4	chr14	100211207	100211407	+	994.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61511.0	NM_010636	16597.0	Mm.396499	NM_010636	ENSMUSG00000072294	Klf12	2700063E05Rik|AI225908|AI315654|AP-2rep|B130052C06Rik|D530033K05Rik	Kruppel-like factor 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-99338856-2	chr5	99338756	99338956	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-85929.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88404583-2	chr3	88404483	88404683	+	555.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025928, intron 1 of 4)	intron (NM_025928, intron 1 of 4)	5814.0	NM_001310605	67037.0	Mm.36715	NM_025928	ENSMUSG00000028066	Pmf1	2600009M07Rik|AL033286|AW060657	polyamine-modulated factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-92870390-4	chr16	92870304	92870504	+	975.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44330.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4037957-4	chr19	4037862	4038062	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013541)	promoter-TSS (NM_013541)	-50.0	NM_013541	14870.0	Mm.299292	NM_013541	ENSMUSG00000060803	Gstp1	GstpiB	glutathione S-transferase, pi 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-3462871-1	chr8	3462771	3462971	+	541.0	f1_c57bl6.idr	intron (NM_026951, intron 3 of 4)	B4A|SINE|B4	4777.0	NM_026951	69129.0	Mm.45279	NM_026951	ENSMUSG00000069633	Pex11g	1810022F11Rik|1810049N02Rik|Pex11c|Pex11gamma	peroxisomal biogenesis factor 11 gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-36027586-2	chr19	36027486	36027686	+	629.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360298, intron 1 of 2)	L1Md_F2|LINE|L1	29774.0	NM_001360318	15566.0	Mm.254266	NM_008315	ENSMUSG00000024798	Htr7	5-HT-X|5-HT7	5-hydroxytryptamine (serotonin) receptor 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-18339319-4	chr3	18339218	18339418	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	-95980.0	NM_007825	13123.0	Mm.316000	NM_007825	ENSMUSG00000039519	Cyp7b1	AW261589|D3Ertd552e|hct-1	cytochrome P450, family 7, subfamily b, polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-32756630-1	chr8	32756530	32756730	+	557.0	f1_c57bl6.idr	Intergenic	Intergenic	193396.0	NM_001177589	100042715.0	Mm.291093	NM_001177589		Gm3985	-	predicted gene 3985	protein-coding	0.938709395345019	3.0617937026544	2.53676918362799	1.25193524999207	1.56857341550524	1.96213493691739	1.88668454931608	0.989945828121254	-1.3900789047265	0.230325584145473	0.724047080849969
Merged-chr5-43912734-2	chr5	43912634	43912834	+	557.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_007646)	TTS (NM_007646)	43925.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-79555084-4	chr10	79554988	79555188	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027422)	promoter-TSS (NM_027422)	40.0	NM_001316699	70427.0	Mm.334193	NM_027422	ENSMUSG00000042570	Mier2	2700087H15Rik|mKIAA1193	MIER family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80427139-2	chr7	80427054	80427254	+	680.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-21718.0	NM_001081454	18550.0	Mm.5241	NM_011046	ENSMUSG00000030530	Furin	9130404I01Rik|Fur|PACE|Pcsk3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-60681072-4	chr18	60680949	60681149	+	915.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17639.0	NR_045401	328963.0	Mm.417203	NR_045401		G630071F17Rik	G630071F17	RIKEN cDNA G630071F17 gene	ncRNA	3.93676327319744	3.65992849869741	3.90654598751762	2.92294487407248	4.01348350745886	3.85066064536605	3.93546944422535	3.1719383223523	0.169152654027321	0.746342501874014	0.998431161219273
Merged-chr8-34766550-1	chr8	34766450	34766650	+	570.0	f1_balb.idr	Intergenic	MTC|LTR|ERVL-MaLR	-41060.0	NM_176933	319520.0	Mm.170276	NM_176933	ENSMUSG00000031530	Dusp4	2700078F24Rik|AI844617|BB104621|E130306H24Rik|MKP2	dual specificity phosphatase 4	protein-coding	0.710145544621845	0.387754486092455	0.382310818580034	0.764057142280542	0.501134804539275	0.388988712823111	0.995230150243187	0.769621993851278	0.769760837291338	0.663127656889492	1
Merged-chr17-5623848-2	chr17	5623748	5623948	+	573.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	131248.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126540266-2	chr7	126540166	126540366	+	710.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26100.0	NM_146200	56347.0	Mm.22776	NM_146200	ENSMUSG00000030738	Eif3c	110kDa|3230401O13Rik|Eif3s8|NIPIL(A3)|NipilA3|Xs|Xsl	eukaryotic translation initiation factor 3, subunit C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-148037646-2	chr4	148037546	148037746	+	613.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011929, intron 2 of 22)	intron (NM_011929, intron 2 of 22)	1167.0	NM_011929	26372.0	Mm.89987	NM_011929	ENSMUSG00000029016	Clcn6	AI850629|Clc6	chloride channel, voltage-sensitive 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-63132973-4	chr11	63132867	63133067	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001302260, exon 1 of 5)	5' UTR (NM_001302260, exon 1 of 5)	164.0	NM_001302260	18858.0	Mm.1237	NM_008885	ENSMUSG00000018217	Pmp22	22kDa|Gas-3|HNPP|TRE002|Tr|trembler	peripheral myelin protein 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-7222242-2	chr9	7222142	7222342	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37737.0	NM_029775	76863.0	Mm.27293	NM_029775	ENSMUSG00000032002	Dcun1d5	3110001A18Rik|4833420K19Rik|AW060460|D430047L21Rik	DCN1, defective in cullin neddylation 1, domain containing 5 (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-149155917-4	chr4	149155852	149156052	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081274, intron 8 of 12)	intron (NM_001081274, intron 8 of 12)	10130.0	NM_001356332	110208.0	Mm.252080	NM_025801	ENSMUSG00000028961	Pgd	0610042A05Rik|AU019875|C78335	phosphogluconate dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-7907368-2	chr4	7907268	7907468	+	873.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	331673.0	NM_007592	12319.0	Mm.119320	NM_007592	ENSMUSG00000041261	Car8	AW546993|Ca8|Cals|Cals1|Carp|wdl	carbonic anhydrase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-64956286-4	chr18	64956378	64956578	+	777.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114386, intron 1 of 30)	intron (NM_001114386, intron 1 of 30)	-67049.0	NM_031881	83814.0	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	1.23983080783103	2.00776404151361	0.77562013314167	1.21613034167571	0.514529399788387	0.560931301991695	0.54625343280143	0.754684732117655	-4.14828143845479	0.00943182788467007	0.104586941737774
Merged-chr5-138225377-2	chr5	138225277	138225477	+	732.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001013773)	promoter-TSS (NM_001013773)	-527.0	NM_001013773	381680.0	Mm.156846	NM_001013773	ENSMUSG00000047592	Nxpe5	-	neurexophilin and PC-esterase domain family, member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-63373527-2	chr4	63373427	63373627	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001045514, intron 17 of 21)	intron (NM_001045514, intron 17 of 21)	11078.0	NM_011016	18406.0	Mm.14173	NM_011016	ENSMUSG00000061540	Orm2	Agp1|Orm-2	orosomucoid 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150609556-2	chr4	150609456	150609656	+	590.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 12 of 22)	B4|SINE|B4	42618.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-121297559-4	chr10	121297436	121297636	+	909.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361015, intron 6 of 12)	intron (NM_001361015, intron 6 of 12)	13860.0	NM_029057	74694.0	Mm.233833	NM_029057	ENSMUSG00000052302	Tbc1d30	4930505D03Rik|9530013E20Rik	TBC1 domain family, member 30	protein-coding	3.10570167470383	3.67157004304071	3.46611794651903	2.3923118676136	3.51138323807376	3.07193870299915	4.24629451267908	4.21698230532715	0.929121968772908	0.112934469139054	0.526413271457021
Merged-chr6-108784321-6	chr6	108784220	108784420	+	981.111084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026011, intron 1 of 6)	intron (NM_026011, intron 1 of 6)	1261.0	NM_026011	67166.0	Mm.271178	NM_026011	ENSMUSG00000030105	Arl8b	2610313E07Rik|3100002J04Rik|Arl10c|gie1	ADP-ribosylation factor-like 8B	protein-coding	-1.56355737717652	-1.81244775989375	-1.82128546162293	-1.82854501295842	-1.83962066705452	-1.81053259306168	-1.81928479966835	-1.82724555674025	-1.28500227969968	0.715751224811686	1
Merged-chr14-102827926-4	chr14	102827837	102828037	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	154695.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-57467004-2	chr9	57466904	57467104	+	674.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301635, intron 1 of 5)	intron (NM_001301635, intron 1 of 5)	1056.0	NM_001301634	56807.0	Mm.102278	NM_020270	ENSMUSG00000040722	Scamp5	Sc5	secretory carrier membrane protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-81134949-4	chr3	81134849	81135049	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357746, intron 2 of 6)	intron (NM_001357746, intron 2 of 6)	98533.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-129231810-3	chr6	129231760	129231960	+	760.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_040265)	TTS (NR_040265)	6185.0	NR_040265	76432.0	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-51883751-4	chr14	51883653	51883853	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-1089.0	NM_001029990	52535.0	Mm.5750	NM_001029990	ENSMUSG00000004561	Mettl17	2310032K15Rik|D14Ertd209e|Mett11d1	methyltransferase like 17	protein-coding	3.83963844585891	3.30464188262129	3.75381003192188	4.03440826512184	4.02261985627211	3.98371854583629	3.61980129007848	4.25698409471992	0.321848273005491	0.494078036557686	0.935679785535167
Merged-chr5-137883112-4	chr5	137883017	137883217	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11359.0	NM_001024932	545812.0	Mm.332769	NM_001024932	ENSMUSG00000066682	Pilrb2	EG545812	paired immunoglobin-like type 2 receptor beta 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-51498147-4	chr1	51498048	51498248	+	914.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19749.0	NM_001310549	109019.0	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-6081484-4	chr15	6081397	6081597	+	989.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR82B|LTR|ERVL	-36793.0	NR_155429	105245876.0	Mm.128197	NR_155428		Gm41259	-	predicted gene, 41259	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69417208-2	chr11	69417108	69417308	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3533.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-11951793-2	chr19	11951700	11951900	+	659.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-14044.0	NM_001033174	76303.0	Mm.291279	NM_001033174	ENSMUSG00000024687	Osbp	1110018F06Rik|AW559088|mKIAA4220	oxysterol binding protein	protein-coding	1.93790143265059	1.05815584233989	2.58247379817554	1.72381935941462	1.64505858030059	1.06314711455511	1.4805491596282	1.73326955811846	-1.2802622620917	0.268740530499017	0.771990954092706
Merged-chr6-114916500-4	chr6	114916390	114916590	+	887.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356371, intron 2 of 5)	intron (NM_001356371, intron 2 of 5)	5331.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-86803491-2	chr5	86803391	86803591	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347375)	promoter-TSS (NM_001347375)	-775.0	NM_001347375	231386.0	Mm.196325	NM_177680	ENSMUSG00000035851	Ythdc1	A730098D12Rik|C80342|mKIAA1966	YTH domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-70570973-2	chr17	70570873	70571073	+	600.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001128181, intron 1 of 9)	intron (NM_001128181, intron 1 of 9)	9226.0	NM_001128181	224997.0	Mm.311840	NM_027712	ENSMUSG00000003279	Dlgap1	4933422O14Rik|9630002F18|AI845682|AI848168|BB075781|D17Bwg0511e|GKAP/SAPAP|GKPA/SAPAP|Gkap|Sapap1|mKIAA4162	DLG associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76233083-3	chr15	76233013	76233213	+	865.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001163575, exon 11 of 11)	3' UTR (NM_001163575, exon 11 of 11)	-1735.0	NM_011117	18810.0	Mm.234912	NM_011117	ENSMUSG00000022565	Plec	AA591047|AU042537|EBS1|PCN|PLTN|Plec1	plectin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-99316020-2	chr13	99315954	99316154	+	776.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	28624.0	NM_026873	68927.0	Mm.276502	NM_026873	ENSMUSG00000021650	Ptcd2	1190005P08Rik	pentatricopeptide repeat domain 2	protein-coding	-1.50676311888816	-1.3179642277071	-1.48389084616614	-1.49203548946145	-1.50446149868796	-1.47182697681864	-1.16962343134569	-1.49057760220565	0.878851526425973	0.799141216532148	1
Merged-chr8-57531184-4	chr8	57531082	57531282	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167981, intron 11 of 11)	intron (NM_001167981, intron 11 of 11)	19339.0	NM_008252	97165.0	Mm.276881	NM_008252	ENSMUSG00000054717	Hmgb2	C80539|HMG-2|Hmg2	high mobility group box 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-73328494-4	chr13	73328384	73328584	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010888)	promoter-TSS (NM_010888)	-2.0	NM_010888	407785.0	Mm.29897	NM_010888	ENSMUSG00000021606	Ndufs6	BC059730|IP13	NADH dehydrogenase (ubiquinone) Fe-S protein 6	protein-coding	5.83065635790194	6.30819224017497	6.39131038552687	5.65616868802219	5.6045392330533	5.44760522293252	5.89748372615011	5.20880674652548	-0.570898281409751	0.0351377209779132	0.26541953317202
Merged-chr14-37135381-4	chr14	37135296	37135496	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199122)	promoter-TSS (NM_001199122)	-74.0	NM_078478	66092.0	Mm.182912	NM_078478	ENSMUSG00000041028	Ghitm	1010001P14Rik|C77840|MICS1|PTD010|Tmbim5	growth hormone inducible transmembrane protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-57622017-4	chr19	57621923	57622123	+	951.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181415, intron 1 of 28)	L1ME1|LINE|L1	10989.0	NM_181415	226255.0	Mm.245340	NM_181415	ENSMUSG00000054843	Atrnl1	AI504415|AW555641|Alp|Atrnl|Atrnlp	attractin like 1	protein-coding	3.10830986078495	1.72215734268591	2.97633948053436	2.63003931315362	3.60540078505753	3.68565952188958	4.05550938834533	3.93980740150714	1.77666302031504	0.00382147092046914	0.0542389685770371
Merged-chr14-17773101-3	chr14	17772988	17773188	+	745.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113417, intron 1 of 9)	intron (NM_001113417, intron 1 of 9)	112128.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-37338979-2	chr2	37338879	37339079	+	672.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7230.0	NM_146374	258371.0	Mm.223061	NM_146374	ENSMUSG00000049018	Olfr368	MOR178-1	olfactory receptor 368	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43460860-4	chr4	43460754	43460954	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MurERV4-int|LTR|ERVK	-6228.0	NM_007654	12517.0	Mm.188157	NM_007654	ENSMUSG00000028459	Cd72	CD72c|Ly-19|Ly-32|Ly-m19|Lyb-2	CD72 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116128235-2	chr11	116128132	116128332	+	577.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_178802, exon 2 of 6)	exon (NM_178802, exon 2 of 6)	2896.0	NM_178802	338364.0	Mm.439976	NM_178802	ENSMUSG00000054517	Trim65	4732463G12Rik	tripartite motif-containing 65	protein-coding	-1.36141685170164	-1.32709393682217	-1.4879644401065	-1.34460346395659	-1.50790826379678	-1.47626818093174	-1.48578825236566	-1.49444743734591	-1.97689080919423	0.533687321098919	1
Merged-chr11-59563006-4	chr11	59562888	59563088	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153314, intron 7 of 9)	MTE2b|LTR|ERVL-MaLR	8750.0	NM_001011789	257962.0	Mm.377316	NM_001011789	ENSMUSG00000059610	Olfr222	MOR256-45P	olfactory receptor 222	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-64887647-4	chr18	64887559	64887759	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001114386)	promoter-TSS (NM_001114386)	-97.0	NM_001114386	83814.0	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-63746480-2	chr4	63746380	63746580	+	738.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(GGAA)n|Simple_repeat|Simple_repeat	-1367.0	NM_177371	326623.0	Mm.208152	NM_177371	ENSMUSG00000050395	Tnfsf15	Tl1|Tl1a|Tnlg1b|Vegi	tumor necrosis factor (ligand) superfamily, member 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-21319792-3	chr19	21319685	21319885	+	718.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A1-int|LTR|ERVL-MaLR	47507.0	NM_009551	22682.0	Mm.292405	NM_009551	ENSMUSG00000024750	Zfand5	2310057A04Rik|5830475F03Rik|AA415485|Za20d2|Zfp216	zinc finger, AN1-type domain 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-42245877-4	chr6	42245783	42245983	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029555)	promoter-TSS (NM_029555)	-52.0	NM_029555	76263.0	Mm.267014	NM_029555	ENSMUSG00000029864	Gstk1	0610025I19Rik|AW260476|DsbA-L	glutathione S-transferase kappa 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88423033-2	chr3	88422933	88423133	+	606.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001281795, intron 1 of 3)	ID_B1|SINE|B4	2108.0	NM_178696	229517.0	Mm.301740	NM_178696	ENSMUSG00000050144	Slc25a44	6720482A19|B430110G05Rik	solute carrier family 25, member 44	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-47625351-1	chr9	47625251	47625451	+	544.0	f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	94999.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	0.230050994291862	0.244370081676876	0.394690882389491	0.791912774713412	0.357470607710668	0.567315188960087	0.240669558529447	0.715905845801724	0.288368600921776	0.87828937148097	1
Merged-chr4-35120315-4	chr4	35120207	35120407	+	960.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178061, intron 1 of 3)	intron (NM_178061, intron 1 of 3)	-31748.0	NM_199157	387510.0	Mm.386929	NM_199157	ENSMUSG00000042993	Ifnk	-	interferon kappa	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-105170333-4	chr1	105170238	105170438	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-185669.0	NR_151539	100504568.0	Mm.321153	NR_151538	ENSMUSG00000097482	Gm17634	-	predicted gene, 17634	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-31228919-3	chr5	31228834	31229034	+	974.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8389.0	NM_008014	14208.0	Mm.14501	NM_008014	ENSMUSG00000029147	Ppm1g	AI385652|Fin13	protein phosphatase 1G (formerly 2C), magnesium-dependent, gamma isoform	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-83610170-3	chr7	83610042	83610242	+	802.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177695, intron 14 of 22)	RMER15|LTR|ERVL	-21875.0	NM_023377	170460.0	Mm.357953	NM_023377	ENSMUSG00000046027	Stard5	2310058G22Rik|AI607880|D7Ertd152e	StAR-related lipid transfer (START) domain containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-181471450-2	chr2	181471350	181471550	+	573.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12024.0	NM_028125	72147.0	Mm.486504	NM_027656	ENSMUSG00000027583	Zbtb46	2610019F01Rik|4933406L05Rik|BZEL|Btbd4	zinc finger and BTB domain containing 46	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-29474619-4	chr6	29474502	29474702	+	999.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3165.0	NM_001145360	668210.0	Mm.420607	NM_001145360	ENSMUSG00000090685	Gm9047	EG668210	predicted gene 9047	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-11554860-1	chr8	11554760	11554960	+	906.0	f0_c57.idr	promoter-TSS (NM_001302458)	promoter-TSS (NM_001302458)	-902.0	NM_001302458	26356.0	Mm.25709	NM_011919	ENSMUSG00000045969	Ing1	2610028J21Rik|AA407184|AI875420|mING1h|p33Ing1|p37Ing1b	inhibitor of growth family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-31689234-4	chr2	31689151	31689351	+	888.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_153862)	promoter-TSS (NR_153862)	714.0	NM_001283046	11350.0	Mm.1318	NM_009594	ENSMUSG00000026842	Abl1	AI325092|Abl|E430008G22Rik|c-Abl	c-abl oncogene 1, non-receptor tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-52195840-3	chr14	52195728	52195928	+	811.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033618, intron 1 of 25)	B3|SINE|B2	1411.0	NM_033618	114741.0	Mm.21662	NM_033618	ENSMUSG00000035726	Supt16	Cdc68|Fact140|Spt16|Supt16h	suppressor of Ty 16	protein-coding	-2.18361151404719	-2.02201993626881	-2.16403530460334	-2.1710062446989	-2.18164157430194	-2.15370992785044	-2.16211418110791	-2.16975844975469	-0.683654500252594	0.846597994014493	1
Merged-chr11-98947119-2	chr11	98947019	98947219	+	776.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177303, intron 1 of 8)	intron (NM_001177303, intron 1 of 8)	7408.0	NM_001177303	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-147398552-2	chr4	147398452	147398652	+	956.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039209, intron 1 of 2)	RMER17D2|LTR|ERVK	-154725.0	NM_001014397	433804.0	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154	zinc finger protein 985	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91447250-2	chr16	91447150	91447350	+	704.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17854.0	NR_077219	100503120.0	Mm.387130	NR_077219	ENSMUSG00000084866	A930006K02Rik	-	RIKEN cDNA A930006K02 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95679447-2	chr3	95679347	95679547	+	599.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301705, intron 14 of 17)	intron (NM_001301705, intron 14 of 17)	8470.0	NM_144899	229595.0	Mm.490574	NM_144899	ENSMUSG00000015850	Adamtsl4	ADAMTSL-4|Tsrc1	ADAMTS-like 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-113101779-4	chr11	113101653	113101853	+	853.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015556, intron 1 of 2)	intron (NR_015556, intron 1 of 2)	100085.0	NR_015556	72386.0	Mm.266961	NR_015556	ENSMUSG00000087259	2610035D17Rik	-	RIKEN cDNA 2610035D17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81183696-2	chr10	81183596	81183796	+	563.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007828)	promoter-TSS (NM_007828)	-222.0	NM_007828	13144.0	Mm.10294	NM_007828	ENSMUSG00000034974	Dapk3	ZIPK|dlk	death-associated protein kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-148527988-4	chr2	148527938	148528138	+	862.383301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-84503.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-28812963-4	chr4	28812856	28813056	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001122889)	promoter-TSS (NM_001122889)	-175.0	NM_001290434	13841.0	Mm.257266	NM_010141	ENSMUSG00000028289	Epha7	Cek11|Ebk|Ehk3|Hek11|Mdk1	Eph receptor A7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115157613-2	chr11	115157513	115157713	+	808.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_021411, intron 2 of 8)	intron (NM_021411, intron 2 of 8)	3435.0	NM_021411	58222.0	Mm.143789	NM_021411	ENSMUSG00000020732	Rab37	B230331O03Rik|B230354I04Rik	RAB37, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-195232795-3	chr1	195232697	195232897	+	885.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56082.0	NM_007758	12902.0	Mm.235387	NM_007758	ENSMUSG00000026616	Cr2	C3DR|CD21|CD35|Cr-1|Cr-2|Cr1	complement receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47360219-2	chr17	47360130	47360330	+	612.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172622, exon 17 of 17)	3' UTR (NM_172622, exon 17 of 17)	-8657.0	NM_001146212	64657.0	Mm.216250	NM_183086	ENSMUSG00000034729	Mrps10	1110038B19Rik|AW743084|Rpms10	mitochondrial ribosomal protein S10	protein-coding	1.03721733033369	0.780956481859181	0.757107284119871	1.2028903848542	0.565730251666624	0.786302930181556	1.04404392846229	0.882853095642863	-0.700005436374134	0.636168666621825	1
Merged-chr8-35135837-3	chr8	35135721	35135921	+	961.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-170131.0	NM_175091	21951.0	Mm.88364	NM_175091	ENSMUSG00000031529	Tnks	4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	protein-coding	5.01108948498597	5.09310338591648	5.15712664493436	5.71997822423487	2.78817078774253	1.70647647274431	1.92538700724665	1.83242894030607	-4.54735192661925	1.06416834460391e-13	4.55996135662777e-11
Merged-chr11-84819556-4	chr11	84819465	84819665	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145433)	promoter-TSS (NM_145433)	-50.0	NM_145433	217038.0	Mm.280825	NM_145433	ENSMUSG00000018405	Mrm1	A530065E19Rik	mitochondrial rRNA methyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-138997275-2	chr5	138997175	138997375	+	572.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2322.0	NM_008808	18590.0	Mm.2675	NM_008808	ENSMUSG00000025856	Pdgfa	-	platelet derived growth factor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-62782071-4	chr10	62781963	62782163	+	733.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026201, intron 5 of 24)	B2_Mm1a|SINE|B2	10305.0	NM_026201	67500.0	Mm.196371	NM_026201	ENSMUSG00000020074	Ccar1	2610511G16Rik|9430036H15Rik|Carp1	cell division cycle and apoptosis regulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-83819130-4	chr18	83818994	83819194	+	768.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	267468.0	NM_001081300	110796.0	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-101629034-4	chr2	101628932	101629132	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026592)	promoter-TSS (NM_026592)	-46.0	NM_026592	68170.0	Mm.31263	NM_026592	ENSMUSG00000027165	B230118H07Rik	NWC	RIKEN cDNA B230118H07 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-24244449-2	chr18	24244349	24244549	+	911.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361200, intron 3 of 12)	intron (NM_001361200, intron 3 of 12)	38455.0	NM_001160404	14423.0	Mm.30249	NM_013814	ENSMUSG00000000420	Galnt1	-	polypeptide N-acetylgalactosaminyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-8342067-3	chr15	8341939	8342139	+	727.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201232, intron 11 of 45)	intron (NM_201232, intron 11 of 45)	102424.0	NM_027707	71175.0	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	NIPBL cohesin loading factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-101925476-1	chr5	101925376	101925576	+	542.0	f1_balb.idr	intron (NM_172882, intron 18 of 66)	intron (NM_172882, intron 18 of 66)	144445.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-110286327-4	chr5	110286278	110286478	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008993)	promoter-TSS (NM_008993)	59.0	NM_011132	18973.0	Mm.35061	NM_011132	ENSMUSG00000007080	Pole	-	polymerase (DNA directed), epsilon	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-23142881-4	chr19	23142799	23142999	+	925.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010638, intron 1 of 1)	intron (NM_010638, intron 1 of 1)	1673.0	NM_010638	16601.0	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|Gm9971	Kruppel-like factor 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-98084023-7	chr3	98083908	98084108	+	967.714294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010928, intron 5 of 33)	intron (NM_010928, intron 5 of 33)	70470.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139483669-4	chr5	139483559	139483759	+	954.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159908, intron 1 of 6)	intron (NM_001159908, intron 1 of 6)	832.0	NM_133349	100494.0	Mm.24521	NM_133349	ENSMUSG00000053581	Zfand2a	AA407930|AU016206|Airap	zinc finger, AN1-type domain 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-94593619-2	chr1	94593519	94593719	+	676.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	-203823.0	NR_040473	74689.0	Mm.399187	NR_040473	ENSMUSG00000100518	4930440C22Rik	-	RIKEN cDNA 4930440C22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-32713317-2	chr5	32713217	32713417	+	574.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33025.0	NM_001347332	320951.0	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-43365549-4	chr13	43365443	43365643	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-5173.0	NM_178848	68346.0	Mm.35325	NM_178848	ENSMUSG00000054021	Sirt5	0610012J09Rik|1500032M05Rik|AV001953	sirtuin 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46939486-2	chr8	46939386	46939586	+	567.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-47401.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-48552573-7	chr13	48552538	48552738	+	939.607117	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14366.0	NR_029725	387244.0		NR_029725	ENSMUSG00000065421	Mirlet7a-1	Let-7a|Mirnlet7a|Mirnlet7a-1|let-7a-1	microRNA let7a-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-116290726-2	chr10	116290626	116290826	+	737.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10648.0	NM_029928	19263.0	Mm.37213	NM_029928	ENSMUSG00000020154	Ptprb	3230402H02Rik|C130094E24|Ptpz|Rptpb|VE-PTP|Veptp	protein tyrosine phosphatase, receptor type, B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-27389906-4	chr16	27389792	27389992	+	869.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025615, intron 1 of 9)	intron (NM_001025615, intron 1 of 9)	936.0	NM_001289436	67501.0	Mm.258985	NM_026202	ENSMUSG00000038127	Ccdc50	C3orf6	coiled-coil domain containing 50	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-82848174-3	chr18	82848088	82848288	+	604.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7709.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-7023151-2	chr19	7023051	7023251	+	634.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016737, intron 10 of 13)	Lx6|LINE|L1	-3682.0	NM_001362399	108101.0	Mm.157591	NM_153795	ENSMUSG00000024965	Fermt3	C79673|Kindlin3	fermitin family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132983174-4	chr4	132983061	132983261	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010208, intron 1 of 12)	intron (NM_010208, intron 1 of 12)	9066.0	NM_010208	14191.0	Mm.271665	NM_010208	ENSMUSG00000028874	Fgr	-	FGR proto-oncogene, Src family tyrosine kinase	protein-coding	5.33899188113136	3.96197651177467	5.48127615280402	4.34325176592178	5.35290873014072	5.18084798803116	6.07126829442606	5.42762691716604	0.716193494761823	0.0577285493221676	0.355558077395979
Merged-chr16-44126647-4	chr16	44126543	44126743	+	981.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007508, intron 1 of 14)	intron (NM_007508, intron 1 of 14)	12616.0	NM_001358203	11964.0	Mm.217787	NM_007508	ENSMUSG00000052459	Atp6v1a	AI647066|Atp6a1|Atp6a2|Atp6v1a1|VA68|VPP2	ATPase, H+ transporting, lysosomal V1 subunit A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-84938161-3	chr3	84938033	84938233	+	806.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177774, intron 3 of 12)	intron (NM_001177774, intron 3 of 12)	-14078.0	NM_080428	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-99279729-1	chr10	99279629	99279829	+	583.0	f0_balb.idr	Intergenic	Intergenic	16498.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-90481036-3	chr7	90480890	90481090	+	907.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3A|LINE|L1	-4995.0	NM_026734	68472.0	Mm.289791	NM_026734	ENSMUSG00000030614	Tmem126b	1110001A23Rik	transmembrane protein 126B	protein-coding	1.22402583172372	2.35006327824593	1.34269828562474	1.8203084544343	3.49445616470003	3.11356334215048	3.45247125717859	3.21748265448475	3.31714516228965	0.000111860544396702	0.00334967423878111
Merged-chr8-120441932-3	chr8	120441836	120442036	+	993.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46930.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-114282785-4	chr6	114282660	114282860	+	956.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_178703, exon 1 of 16)	5' UTR (NM_178703, exon 1 of 16)	125.0	NM_178703	232333.0	Mm.5260	NM_178703	ENSMUSG00000030310	Slc6a1	A730043E01|GABATHG|GABATR|GAT-1|Gabt|Gabt1|Gat1|XT-1|Xtrp1	solute carrier family 6 (neurotransmitter transporter, GABA), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-62174702-3	chr18	62174613	62174813	+	764.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5268.0	NM_007420	11555.0	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129596523-3	chr2	129596426	129596626	+	966.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355160, intron 1 of 7)	intron (NM_001355160, intron 1 of 7)	1064.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	-0.585750136378803	-0.574740085344961	-0.578352923889335	-0.0496394507928595	-0.585064430927764	-0.573924946871814	-0.577556558535478	-0.0428439794746447	0.0283831331496041	0.992068125565279	1
Merged-chr9-45552814-2	chr9	45552714	45552914	+	687.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081270, intron 3 of 32)	MIRc|SINE|MIR	-121582.0	NR_040732	74602.0	Mm.394117	NR_040732	ENSMUSG00000097074	4833428L15Rik	-	RIKEN cDNA 4833428L15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-44414127-2	chr19	44414027	44414227	+	670.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-6418.0	NM_009127	20249.0	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100396083-3	chr11	100395936	100396136	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010593, intron 1 of 13)	intron (NM_010593, intron 1 of 13)	1754.0	NM_010593	16480.0	Mm.299774	NM_010593	ENSMUSG00000001552	Jup	Ctnng|D930025P04Rik|PG	junction plakoglobin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-97305669-2	chr7	97305569	97305769	+	904.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010248, exon 10 of 10)	3' UTR (NM_010248, exon 10 of 10)	20295.0	NM_001177412	244144.0	Mm.297541	NM_001177412	ENSMUSG00000035713	Usp35	Gm1088|Gm493	ubiquitin specific peptidase 35	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3917941-2	chr12	3917841	3918041	+	795.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26197.0	NM_153743	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117723482-2	chr10	117723382	117723582	+	541.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-12724.0	NM_001288586	17246.0	Mm.22670	NM_010786	ENSMUSG00000020184	Mdm2	1700007J15Rik|AA415488|Mdm-2	transformed mouse 3T3 cell double minute 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-5633203-4	chr6	5633104	5633304	+	788.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-92435.0	NM_001191023	13426.0	Mm.20893	NM_010063	ENSMUSG00000029757	Dync1i1	DH IC-1|DHIC-1|DIC|Dncic1|IC74	dynein cytoplasmic 1 intermediate chain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-110908813-1	chr7	110908713	110908913	+	592.0	f0_balb.idr	intron (NM_194464, intron 10 of 20)	HAL1b|LINE|L1	3828.0	NR_045267	100504184.0	Mm.441327	NR_045267	ENSMUSG00000087160	Gm16336	-	predicted gene 16336	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-109705492-4	chr8	109705399	109705599	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286393)	promoter-TSS (NM_001286393)	-47.0	NM_001286393	75871.0	Mm.180410	NM_029468	ENSMUSG00000031728	Zfp821	4930566A11Rik|Znf821	zinc finger protein 821	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19330204-2	chr7	19330104	19330304	+	652.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14867.0	NM_001127324	13870.0	Mm.280913	NM_007948	ENSMUSG00000003549	Ercc1	Ercc-1	excision repair cross-complementing rodent repair deficiency, complementation group 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-130786853-2	chr4	130786753	130786953	+	922.0625	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5684.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-67212968-3	chr18	67212895	67213095	+	914.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177137, intron 7 of 11)	intron (NM_177137, intron 7 of 11)	7636.0	NM_024190	67064.0	Mm.73777	NM_024190	ENSMUSG00000109901	Chmp1b	2810405I11Rik|Chmp1b1	charged multivesicular body protein 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-5062711-2	chr11	5062584	5062784	+	816.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_001190406, exon 3 of 5)	exon (NM_001190406, exon 3 of 5)	2643.0	NM_144560	78926.0	Mm.44591	NM_030228	ENSMUSG00000034201	Gas2l1	4930500E24Rik|D0Jmb1|Gar22|TU-71.1	growth arrest-specific 2 like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-105149681-4	chr4	105149624	105149824	+	948.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER58B|DNA|hAT-Charlie	-7623.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167416422-2	chr2	167416322	167416522	+	727.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5288.0	NM_148929	77031.0	Mm.278924	NM_148929	ENSMUSG00000039463	Slc9a8	1200006P13Rik|6430709P13Rik|AI182282|NHE-8|NHE8	solute carrier family 9 (sodium/hydrogen exchanger), member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-37331358-3	chr3	37331275	37331475	+	615.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17278.0	NM_008006	14173.0	Mm.473689	NM_008006	ENSMUSG00000037225	Fgf2	Fgf-2|Fgfb|bFGF	fibroblast growth factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-83571378-2	chr17	83571278	83571478	+	555.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57045.0	NM_001159529	20463.0	Mm.30072	NM_009187	ENSMUSG00000024248	Cox7a2l	COX7AR|COX7RP|EB1|SIG-81|SIG81|Silg81	cytochrome c oxidase subunit VIIa polypeptide 2-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28232629-4	chr17	28232532	28232732	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011145)	promoter-TSS (NM_011145)	-122.0	NM_011145	19015.0	Mm.328914	NM_011145	ENSMUSG00000002250	Ppard	NUC-1|NUC1|Nr1c2|PPAR-beta|PPAR-delta|PPAR[b]|PPARdelta|Pparb|Pparb/d	peroxisome proliferator activator receptor delta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-9884247-2	chr13	9884147	9884347	+	564.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_033269, intron 4 of 4)	L1_Mm|LINE|L1	-118926.0	NM_144516	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36580767-4	chr1	36580673	36580873	+	817.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001126046, intron 11 of 14)	intron (NM_001126046, intron 11 of 14)	12559.0	NM_027957	381337.0	Mm.17413	NM_027957	ENSMUSG00000046337	Fam178b	1700024G10Rik|Gm990	family with sequence similarity 178, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-79833533-2	chr15	79833462	79833662	+	748.416626	f1_balb.idr|f1_c57bl6.idr	exon (NM_028763, exon 4 of 5)	exon (NM_028763, exon 4 of 5)	771.0	NM_001013360	504193.0	Mm.38438	NM_029079	ENSMUSG00000089837	Npcd	Cbx6-Nptxr	neuronal pentraxin chromo domain	protein-coding	0.449238535431628	0.0275476084761149	0.323814567227741	0.0194261972664786	0.458784648045717	0.0285866832400327	0.330783457458334	0.0200413255651593	0.0414179665829699	0.984440840671361	1
Merged-chr15-84191621-2	chr15	84191521	84191721	+	566.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178614)	promoter-TSS (NM_178614)	-612.0	NM_178614	68653.0	Mm.290725	NM_178614	ENSMUSG00000022437	Samm50	1110030L07Rik	SAMM50 sorting and assembly machinery component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-56339285-4	chr10	56339182	56339382	+	912.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38018.0	NM_010288	14609.0	Mm.378921	NM_010288	ENSMUSG00000050953	Gja1	AU042049|AW546267|Cnx43|Cx43|Cx43alpha1|Gja-1|Npm1|connexin43	gap junction protein, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28293488-4	chr17	28293392	28293592	+	938.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011145, intron 3 of 7)	ID_B1|SINE|B4	-19870.0	NR_039557	100628577.0		NR_039557	ENSMUSG00000093061	Mir5098	mmu-mir-5098|mu-mir-5098	microRNA 5098	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-70092340-2	chr2	70092240	70092440	+	844.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177376, intron 2 of 34)	RLTR21|LTR|ERVK	53214.0	NM_177376	329421.0	Mm.99648	NM_177376	ENSMUSG00000042064	Myo3b	A430065P19Rik	myosin IIIB	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-49744442-4	chr2	49744395	49744595	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008449, intron 20 of 25)	intron (NM_008449, intron 20 of 25)	-43191.0	NM_027990	71897.0	Mm.41381	NM_027990	ENSMUSG00000026765	Lypd6b	2310010M24Rik|AW049525	LY6/PLAUR domain containing 6B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-75734884-2	chr2	75734791	75734991	+	644.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TTTTG)n|Simple_repeat|Simple_repeat	-30228.0	NM_010902	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	-1.20406370813143	-1.56956373024278	-1.57884638916872	-1.58647144159385	-1.598104728449	-1.56755213932999	-1.57674499865798	-1.58510656085539	-1.70745470802464	0.626337835847419	1
Merged-chr3-32365717-4	chr3	32365550	32365750	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009517)	promoter-TSS (NM_009517)	15.0	NM_009517	22401.0	Mm.35705	NM_009517	ENSMUSG00000027663	Zmat3	Wig1	zinc finger matrin type 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-119979931-1	chr9	119979831	119980031	+	542.0	f1_c57bl6.idr	intron (NM_153287, intron 1 of 4)	intron (NM_153287, intron 1 of 4)	3092.0	NM_001357560	215418.0	Mm.491094	NM_153287	ENSMUSG00000032515	Csrnp1	4931429D10Rik|Axud1|CSRNP-1|URAX1|taip-3	cysteine-serine-rich nuclear protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-31021709-2	chr17	31021644	31021844	+	928.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35950.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	1.0616668646424	0.971345248194821	0.293872781633245	0.287287438937105	1.07629769794976	0.304230747462635	0.295746072137105	0.288441582487068	-0.811274352628609	0.684779149202572	1
Merged-chr19-34386617-3	chr19	34386489	34386689	+	896.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	88546.0	NM_009890	12642.0	Mm.30824	NM_009890	ENSMUSG00000050370	Ch25h	AI462618|m25OH	cholesterol 25-hydroxylase	protein-coding	2.76297280267937	1.22532462798357	1.19590317110077	2.52821517279449	2.16369810653055	2.20623938681754	1.6673396948131	1.93177267947515	-0.337644172751648	0.754369986863278	0.998431161219273
Merged-chr13-40968233-2	chr13	40968133	40968333	+	913.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_155347, intron 1 of 4)	intron (NR_155347, intron 1 of 4)	-32777.0	NM_026550	68083.0	Mm.24789	NM_026550	ENSMUSG00000038683	Pak1ip1	5830431I15Rik|5930415H02Rik|AA419825|AI314040|AW556169|Gdpd1|PIP1	PAK1 interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-36588116-3	chr16	36587985	36588185	+	898.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-25951.0	NM_013803	12374.0	Mm.103619	NM_013803	ENSMUSG00000051980	Casr	CaR|Gprc2a	calcium-sensing receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-12002374-4	chr19	12002298	12002498	+	954.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34342.0	NM_146680	258675.0	Mm.271517	NM_146680	ENSMUSG00000067529	Olfr1423	MOR239-3	olfactory receptor 1423	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-67588580-4	chr11	67588472	67588672	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109657, intron 1 of 13)	MIR3|SINE|MIR	2072.0	NM_001109657	14457.0	Mm.40338	NM_008088	ENSMUSG00000033066	Gas7	AW124766|B230343A10Rik|Gas7-cb	growth arrest specific 7	protein-coding	3.41407995794343	3.88462111748238	2.87243443526953	3.59449499956261	3.50469709837839	1.76786183560566	3.02063050617716	4.04939765096805	-0.238551176892192	0.725329541000055	0.998431161219273
Merged-chr1-88584434-2	chr1	88584334	88584534	+	641.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32917.0	NR_037971	100503197.0	Mm.99352	NR_037971	ENSMUSG00000100798	Gm19589	-	predicted gene, 19589	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167982797-2	chr2	167982697	167982897	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001080708, exon 20 of 22)	exon (NM_001080708, exon 20 of 22)	27796.0	NM_001080708	69553.0	Mm.68454	NM_001080708	ENSMUSG00000074577	Ripor3	2310033K02Rik|Fam65c|Gm124	RIPOR family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-31118261-3	chr17	31118130	31118330	+	860.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009593)	TTS (NM_009593)	11381.0	NM_011575	21786.0	Mm.4641	NM_011575	ENSMUSG00000024029	Tff3	ITF|mITF	trefoil factor 3, intestinal	protein-coding	0.215049270220083	0.24052225840157	1.06897576894673	0.817484932982003	0.216663794648699	0.24237225041717	0.983713205057503	0.226964426364625	-0.914029760685578	0.653313850932315	1
Merged-chr9-121369319-2	chr9	121369219	121369419	+	612.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357973, intron 1 of 5)	intron (NM_001357973, intron 1 of 5)	2361.0	NM_175114	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-77286552-2	chr10	77286452	77286652	+	591.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A3|LTR|ERVL-MaLR	27252.0	NM_030262	80294.0	Mm.203556	NM_030262	ENSMUSG00000020260	Pofut2	2310011G23Rik|AI256847|BC003494|C21orf80|FUT13	protein O-fucosyltransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-11411300-2	chr16	11411196	11411396	+	896.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290148, intron 1 of 13)	intron (NM_001290148, intron 1 of 13)	5648.0	NM_001290148	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-88134684-2	chr17	88134584	88134784	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	9172.0	NM_001190356	225058.0	Mm.312053	NM_001190356		Gm4832	EG225058	predicted gene 4832	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-104473237-3	chr14	104473092	104473292	+	751.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-5193.0	NM_011143	18996.0	Mm.246550	NM_011143	ENSMUSG00000048349	Pou4f1	Brn-3|Brn-3.0|Brn3|Brn3.0|Brn3a|E130119J07Rik	POU domain, class 4, transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-102193608-2	chr11	102193508	102193708	+	935.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_175935, exon 6 of 6)	exon (NM_175935, exon 6 of 6)	3909.0	NM_175935	68401.0	Mm.22385	NM_175935	ENSMUSG00000034793	G6pc3	0710001K01Rik|AU019276|AU045429|AV128920|AW545836|UGRP	glucose 6 phosphatase, catalytic, 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-113847675-2	chr2	113847582	113847782	+	800.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_181416, intron 1 of 11)	intron (NM_181416, intron 1 of 11)	979.0	NM_181416	228482.0	Mm.45753	NM_181416	ENSMUSG00000041219	Arhgap11a	6530401L14Rik|mKIAA0013	Rho GTPase activating protein 11A	protein-coding	0.446516126271685	0.323867499076888	0.317088746882483	0.616001890241159	0.304451346447953	0.685270288287607	0.895900168876148	0.948455611949878	2.05668056936354	0.258008935549053	1
Merged-chr14-77832581-4	chr14	77832463	77832663	+	893.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025384, intron 5 of 5)	RMER6B|LTR|ERVK	-33595.0	NM_001033440	380920.0	Mm.297771	NM_001033440	ENSMUSG00000075512	Gm1587	-	predicted gene 1587	protein-coding	3.38624587457778	2.77493087706954	3.2679151732286	2.70309832581052	1.79675177527405	1.49290023413395	2.45495605340636	2.37609205015777	-1.98738873598882	0.0127965932194587	0.129673585681643
Merged-chr6-134556398-3	chr6	134556281	134556481	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008514, intron 1 of 22)	MER92A|LTR|ERV1	10532.0	NM_008514	16974.0	Mm.321990	NM_008514	ENSMUSG00000030201	Lrp6	C030016K15Rik|Cd|Gw|ska26|ska<m26Jus>|skax26	low density lipoprotein receptor-related protein 6	protein-coding	6.24329287691221	6.12870050961956	5.05409412925631	6.33230843299976	3.0689686125704	3.11232747964718	2.41308486586716	3.84850953466266	-3.44613754408572	1.43581204990643e-15	9.5704849859874e-13
Merged-chr19-46369365-4	chr19	46369268	46369468	+	895.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029186, intron 6 of 8)	intron (NM_029186, intron 6 of 8)	12488.0	NM_029186	75146.0	Mm.159290	NM_029186	ENSMUSG00000025227	Mfsd13a	4930449A08Rik|4930538D17Rik|Tmem180	major facilitator superfamily domain containing 13a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-98930253-2	chr15	98930153	98930353	+	800.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4137.0	NM_011654	22143.0	Mm.392113	NM_011654	ENSMUSG00000023004	Tuba1b	Tuba2	tubulin, alpha 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97531236-2	chr6	97531131	97531331	+	726.0	f0_balb.idr|f1_balb.idr	intron (NM_145148, intron 1 of 23)	(CA)n|Simple_repeat|Simple_repeat	-43411.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	2.32861375298913	1.27206959804838	1.503759005469	1.46327585579373	3.05596878186902	2.83641503891187	2.08032215918775	2.26792275422531	2.09847084936797	0.030176305407645	0.237985525162746
Merged-chr19-5639590-2	chr19	5639525	5639725	+	973.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009045, intron 4 of 10)	(CAAG)n|Simple_repeat|Simple_repeat	2135.0	NM_009045	19697.0	Mm.249966	NM_009045	ENSMUSG00000024927	Rela	p65	v-rel reticuloendotheliosis viral oncogene homolog A (avian)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120369825-4	chr11	120369749	120369949	+	801.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_027980, exon 10 of 10)	3' UTR (NM_027980, exon 10 of 10)	8315.0	NM_172802	238021.0	Mm.481403	NM_172802	ENSMUSG00000025380	Fscn2	A930022G03|Ahl8|C630046B20Rik	fascin actin-bundling protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-60958171-4	chr10	60958061	60958261	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	-2562.0	NR_130327	100316671.0		NR_130327	ENSMUSG00000080526	Mir466j	Mirn466j|mmu-mir-466j	microRNA 466j	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107636427-2	chr9	107636327	107636527	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-1085.0	NM_008138	14678.0	Mm.196464	NM_008138	ENSMUSG00000032562	Gnai2	C76432|Galphai2|Gia|Gnai-2	guanine nucleotide binding protein (G protein), alpha inhibiting 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-29820482-6	chr2	29820375	29820575	+	887.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6914.0	NM_026615	68205.0	Mm.20273	NM_026615	ENSMUSG00000069020	Urm1	2900073H19Rik	ubiquitin related modifier 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-142467361-5	chr1	142467251	142467451	+	951.2000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	-1173346.0	NM_020025	26878.0	Mm.285580	NM_020025	ENSMUSG00000033849	B3galt2	-	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-65885558-2	chr5	65885441	65885641	+	815.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081105, intron 1 of 2)	intron (NM_001081105, intron 1 of 2)	21972.0	NM_001081105	74734.0	Mm.20323	NM_001081105	ENSMUSG00000029204	Rhoh	5830400A04Rik|AU019774|Arhh	ras homolog family member H	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33912165-4	chr16	33912084	33912284	+	928.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 9 of 14)	intron (NM_001145884, intron 9 of 14)	54854.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-40384055-4	chr10	40383955	40384155	+	787.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291816, intron 1 of 11)	intron (NM_001291816, intron 1 of 11)	34747.0	NM_001291816	78334.0	Mm.200924	NM_198164	ENSMUSG00000038481	Cdk19	2700084L06Rik|AI845279|AW228747|CDK11|Cdc2l6|mKIAA1028	cyclin-dependent kinase 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-103501570-2	chr15	103501486	103501686	+	642.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1448.0	NM_008800	18574.0	Mm.390792	NM_008800	ENSMUSG00000022489	Pde1b	Pde1b1	phosphodiesterase 1B, Ca2+-calmodulin dependent	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-102841286-1	chr9	102841186	102841386	+	602.0	f0_balb.idr	intron (NM_001284258, intron 1 of 13)	intron (NM_001284258, intron 1 of 13)	6366.0	NM_001284258	20187.0	Mm.335391	NM_013649	ENSMUSG00000032547	Ryk	AW536699|ERK-3|Vik	receptor-like tyrosine kinase	protein-coding	0.327464594927618	0.44244366007575	0.0157568443870325	0.151335875205508	0.33492089818127	0.0203957637828088	0.0165866652743988	0.153848456127779	-0.952666538860761	0.638364997595672	1
Merged-chr5-125292096-4	chr5	125291995	125292195	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205083, intron 7 of 10)	intron (NM_001205083, intron 7 of 10)	48999.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	-2.18308165884198	-2.15547475440471	-2.16382331017202	-2.1706810624505	-2.18114370519566	-2.15366558754311	-2.03057248461154	-2.16945352807143	0.759018020146679	0.829933115115583	1
Merged-chr5-117158017-2	chr5	117157917	117158117	+	554.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081308, intron 1 of 19)	MTD|LTR|ERVL-MaLR	24429.0	NM_183306	330177.0	Mm.24343	NM_183306	ENSMUSG00000061288	Taok3	2900006A08Rik|A130052D22|A430105I05Rik	TAO kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28007343-4	chr17	28007234	28007434	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181413, intron 11 of 24)	intron (NM_181413, intron 11 of 24)	73250.0	NM_001357681	21463.0	Mm.29758	NM_013687	ENSMUSG00000062859	Tcp11	D17Ken1|Tcp-11	t-complex protein 11	protein-coding	3.60578751648722	3.17444174944487	3.30018778289601	4.38837978537489	3.8225099875184	4.13616808599061	3.86582960441909	4.77633502565111	0.680818717698757	0.182346999177696	0.656283871978818
Merged-chr1-128106559-2	chr1	128106459	128106659	+	842.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_181750, intron 1 of 26)	intron (NM_181750, intron 1 of 26)	3253.0	NM_181750	226412.0	Mm.221041	NM_181750	ENSMUSG00000056211	R3hdm1	R3hdm	R3H domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-63078528-4	chr14	63078413	63078613	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F|LTR|ERVL-MaLR	23440.0	NR_046019	72609.0	Mm.387101	NR_046019		2700070H01Rik	-	RIKEN cDNA 2700070H01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-122888638-4	chr3	122888505	122888705	+	887.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_046036, intron 5 of 5)	intron (NR_046036, intron 5 of 5)	-6467.0	NM_007980	14079.0	Mm.28398	NM_007980	ENSMUSG00000023057	Fabp2	Fabpi|I-FABP	fatty acid binding protein 2, intestinal	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-76633906-3	chr13	76633805	76634005	+	881.888855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030174, intron 1 of 20)	intron (NM_030174, intron 1 of 20)	248944.0	NM_030174	78771.0	Mm.316249	NM_030174	ENSMUSG00000021596	Mctp1	2810465F10Rik	multiple C2 domains, transmembrane 1	protein-coding	2.74007414147034	3.39950704242941	1.98666027950723	2.60090473818888	1.00186164391561	1.13118693817696	1.8323794065172	1.05634829247371	-3.93367221165318	0.00066254251836054	0.0140114896626729
Merged-chr2-131213186-2	chr2	131213086	131213286	+	708.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001291032, exon 4 of 4)	exon (NM_001291032, exon 4 of 4)	2826.0	NR_110992	69596.0	Mm.2937	NM_027129	ENSMUSG00000068264	Ap5s1	0610038L13Rik|2310035K24Rik|AW060727|sigma5	adaptor-related protein 5 complex, sigma 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-78862111-4	chr12	78861997	78862197	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026114)	promoter-TSS (NM_026114)	25.0	NM_026114	13665.0	Mm.196220	NM_026114	ENSMUSG00000021116	Eif2s1	0910001O23Rik|2410026C18Rik|35kDa|Eif2a|eIF2alpha	eukaryotic translation initiation factor 2, subunit 1 alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-34639443-4	chr2	34639347	34639547	+	766.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	115785.0	NM_001356441	66691.0	Mm.156452	NM_025709	ENSMUSG00000026867	Gapvd1	2010005B09Rik|4432404J10Rik|AW108497|Gapex-5|RAP6|RME-6|mKIAA1521	GTPase activating protein and VPS9 domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-6655135-2	chr11	6655037	6655237	+	791.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_028586, intron 3 of 5)	intron (NR_028586, intron 3 of 5)	-3396.0	NM_019511	56089.0	Mm.39884	NM_019511	ENSMUSG00000041046	Ramp3	AI850306	receptor (calcitonin) activity modifying protein 3	protein-coding	2.52398154984311	1.06288237255204	1.29504854124552	2.13193048108362	2.60339728343965	1.0689830703501	1.04134004164003	2.14423222748249	0.0195899351107334	0.987510258156827	0.998431161219273
Merged-chr4-132482470-2	chr4	132482370	132482570	+	761.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-18549.0	NM_026039	67219.0	Mm.45929	NM_026039	ENSMUSG00000066042	Med18	2810046C01Rik	mediator complex subunit 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-116951001-2	chr13	116950901	116951101	+	737.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081009, intron 3 of 26)	intron (NM_001081009, intron 3 of 26)	74515.0	NM_001081009	52552.0	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-105520087-3	chr5	105519947	105520147	+	962.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133897, intron 1 of 3)	intron (NM_133897, intron 1 of 3)	576.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-38227888-4	chr18	38227814	38228014	+	970.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME3Cz|LINE|L1	-18152.0	NM_029357	75599.0	Mm.36560	NM_029357	ENSMUSG00000051375	Pcdh1	2010005A06Rik|AI585920	protocadherin 1	protein-coding	3.58824075835807	3.54180184101605	4.0528071152787	3.13251321369107	3.61702841800487	3.56759876984655	4.08195423166505	3.14917529388497	0.0388230322419927	0.941771343183905	0.998431161219273
Merged-chr1-184716444-2	chr1	184716392	184716592	+	597.833374	f1_balb.idr|f1_c57bl6.idr	intron (NR_040627, intron 2 of 2)	intron (NR_040627, intron 2 of 2)	3995.0	NR_040627	74971.0	Mm.410816	NR_040627	ENSMUSG00000092578	4930488B22Rik	-	RIKEN cDNA 4930488B22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-95333425-4	chr11	95333318	95333518	+	899.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3600.0	NM_172543	215512.0	Mm.262113	NM_172543	ENSMUSG00000038893	Fam117a	5730593F17Rik|AW548096	family with sequence similarity 117, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-126301421-4	chr4	126301313	126301513	+	763.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199473, intron 2 of 3)	CpG	14619.0	NM_199473	329941.0	Mm.296327	NM_199473	ENSMUSG00000056174	Col8a2	AI429819	collagen, type VIII, alpha 2	protein-coding	1.76983652408955	2.3606482004143	1.60577839206019	2.30107310696998	1.65107831259432	1.45552625741484	1.16143237000514	2.68684510687253	-0.359545583316673	0.73557160049511	0.998431161219273
Merged-chr18-61081944-2	chr18	61081844	61082044	+	734.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001146268, exon 22 of 23)	exon (NM_001146268, exon 22 of 23)	-23628.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-63405890-2	chr4	63405790	63405990	+	598.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2445.0	NM_001045514	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-139035408-3	chr1	139035306	139035506	+	707.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166501, intron 3 of 21)	MTD|LTR|ERVL-MaLR	57749.0	NR_108103	78229.0	Mm.437838	NR_108103	ENSMUSG00000104900	4930596I21Rik	-	RIKEN cDNA 4930596I21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141005997-2	chr4	141005897	141006097	+	736.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164366, intron 25 of 28)	intron (NM_001164366, intron 25 of 28)	-4427.0	NM_001161799	17150.0	Mm.7386	NM_008546	ENSMUSG00000060572	Mfap2	AI893631|Magp|Magp1	microfibrillar-associated protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-43573890-4	chr17	43573822	43574022	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013737, intron 1 of 11)	intron (NM_013737, intron 1 of 11)	5471.0	NM_013737	27226.0	Mm.9277	NM_013737	ENSMUSG00000023913	Pla2g7	PAF-AH|R75400	phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-24387232-2	chr2	24387132	24387332	+	698.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355232, intron 1 of 16)	intron (NM_001355232, intron 1 of 16)	616.0	NM_001355232	215632.0	Mm.490434	NM_177611	ENSMUSG00000026979	Psd4	BC046518|EFA6B	pleckstrin and Sec7 domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34205161-2	chr17	34205061	34205261	+	641.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011530, intron 1 of 11)	intron (NM_011530, intron 1 of 11)	682.0	NM_011530	21355.0	Mm.14814	NM_011530	ENSMUSG00000024339	Tap2	ABC18|AI462429|APT2|Abcb3|Ham-2|Ham2|MTP2|PSF2|RING11|Tap-2|Y1|jas	transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-43667763-4	chr7	43667680	43667880	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTRIS_Mm|LTR|ERV1	-4251.0	NM_145582	233189.0	Mm.26514	NM_145582	ENSMUSG00000038888	Ctu1	Atpbd3|BC005752	cytosolic thiouridylase subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-42264918-4	chr6	42264813	42265013	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007610)	promoter-TSS (NM_007610)	-72.0	NM_007610	12366.0	Mm.3921	NM_007610	ENSMUSG00000029863	Casp2	CASP-2|ICH-1|NEDD-2|Nedd2	caspase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-122120278-3	chr9	122120191	122120391	+	655.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357776, intron 1 of 5)	intron (NM_001357776, intron 1 of 5)	2832.0	NM_001357776	20623.0	Mm.257989	NM_133741	ENSMUSG00000038145	Snrk	2010012F07Rik|AI448042|AW547029|E030034B15|R74830|mKIAA0096	SNF related kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101443081-2	chr11	101442981	101443181	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011289, intron 2 of 4)	intron (NM_011289, intron 2 of 4)	836.0	NM_011289	19942.0	Mm.340658	NM_011289	ENSMUSG00000063316	Rpl27	-	ribosomal protein L27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-118038550-3	chr10	118038455	118038655	+	953.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-103232.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	-0.161343160226579	-0.151006480318723	-0.154433959890411	-0.157051093942233	-0.16070885099321	0.285191682898502	0.344609440393916	0.109485161416712	3.76892866836511	0.107070039221437	1
Merged-chr8-109917433-2	chr8	109917333	109917533	+	619.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001122594, intron 9 of 18)	intron (NM_001122594, intron 9 of 18)	44772.0	NM_212447	73608.0	Mm.86833	NM_028584	ENSMUSG00000001672	Marveld3	1810006A16Rik|AI642133|Marvd3|Mrvldc3	MARVEL (membrane-associating) domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-88142187-3	chr15	88142087	88142287	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-172687.0	NR_045281	328579.0	Mm.146839	NR_045281	ENSMUSG00000116331	B230214G05Rik	B230214G05	RIKEN cDNA B230214G05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115076814-4	chr11	115076717	115076917	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-14614.0	NM_001163753	58222.0	Mm.143789	NM_021411	ENSMUSG00000020732	Rab37	B230331O03Rik|B230354I04Rik	RAB37, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-35599185-4	chr18	35599071	35599271	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357471, intron 1 of 3)	CpG	554.0	NM_001357472	67869.0	Mm.126534	NM_026420	ENSMUSG00000037058	Paip2	2310050K10Rik|AU045972	polyadenylate-binding protein-interacting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125331174-4	chr6	125331070	125331270	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011324, exon 2 of 12)	exon (NM_011324, exon 2 of 12)	9830.0	NM_011324	20276.0	Mm.144114	NM_011324	ENSMUSG00000030340	Scnn1a	ENaC|SCNEA|Scnn1|mENaC	sodium channel, nonvoltage-gated 1 alpha	protein-coding	4.89379859865902	5.05137449691017	5.24813625700337	4.4127804335668	4.00354941093939	4.48510757090969	5.08478608844834	5.36821994070116	-0.118561666872475	0.760639334030978	0.998431161219273
Merged-chr5-41281213-3	chr5	41281103	41281303	+	774.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	426488.0	NM_001310592	100972.0	Mm.41555	NM_027295	ENSMUSG00000029128	Rab28	2700023P08Rik|AW496496	RAB28, member RAS oncogene family	protein-coding	1.19976673568951	1.33830633174972	0.905389065417127	1.63808613432853	1.56065621749282	1.64859297940655	1.90589833691443	0.895193857671741	0.914618139465078	0.475835947518576	0.927406040011522
Merged-chr18-62176815-11	chr18	62176610	62176810	+	904.0242310000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3271.0	NM_007420	11555.0	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-51355501-4	chr12	51355400	51355600	+	774.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001015099, intron 4 of 14)	MTD|LTR|ERVL-MaLR	7270.0	NM_001015099	217558.0	Mm.253264	NM_001015099	ENSMUSG00000035293	G2e3	6030408C04Rik|9030416F18|AW046379|D930034K21Rik|mKIAA1333	G2/M-phase specific E3 ubiquitin ligase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-62280783-4	chr11	62280669	62280869	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029704)	promoter-TSS (NM_029704)	626.0	NM_027198	69747.0	Mm.141150	NM_027198	ENSMUSG00000014243	Zswim7	2410012H22Rik	zinc finger SWIM-type containing 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-56097972-7	chr9	56097870	56098070	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011193, intron 1 of 14)	intron (NM_011193, intron 1 of 14)	7994.0	NM_011193	19200.0	Mm.2534	NM_011193	ENSMUSG00000032322	Pstpip1	CD2BP1|def-2	proline-serine-threonine phosphatase-interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-87432609-4	chr16	87432498	87432698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081068)	promoter-TSS (NM_001081068)	8.0	NM_001081068	78913.0	Mm.249005	NM_001081068	ENSMUSG00000052299	Ltn1	4930528H02Rik|AV266914|C87237|Listerin|Rnf160|Zfp294	listerin E3 ubiquitin protein ligase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-31658851-4	chr17	31658753	31658953	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357907)	promoter-TSS (NM_001357907)	-89.0	NM_001357907	108121.0	Mm.379289	NM_024187	ENSMUSG00000061613	U2af1	2010107D16Rik	U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129413787-4	chr2	129413708	129413908	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42669.0	NM_008361	16176.0	Mm.222830	NM_008361	ENSMUSG00000027398	Il1b	IL-1beta|Il-1b	interleukin 1 beta	protein-coding	4.94070258003813	4.81913721808994	5.34125071158528	4.68095414373069	5.79074992742976	5.65733834076232	6.34736813943809	5.68268537634668	1.06405552979201	0.000316940393189391	0.00765632637265404
Merged-chr16-94241348-4	chr16	94241247	94241447	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360045, intron 5 of 10)	ORR1D2|LTR|ERVL-MaLR	48944.0	NM_001360045	110948.0	Mm.30921	NM_139145	ENSMUSG00000040820	Hlcs	410I21.SP6|D16Jhu34	holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-17554167-4	chr16	17554085	17554285	+	998.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145435, intron 4 of 7)	intron (NM_001145435, intron 4 of 7)	7062.0	NM_029053	74685.0	Mm.38634	NM_029053	ENSMUSG00000022759	Lrrc74b	4930451C15Rik|mCG12354|mCP17390	leucine rich repeat containing 74B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-153849867-2	chr3	153849767	153849967	+	618.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_040373)	TTS (NR_040373)	2557.0	NR_040373	72317.0	Mm.440147	NR_040373	ENSMUSG00000086438	Asb17os	2510003D18Rik	ankyrin repeat and SOCS box-containing 17, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-35756065-3	chr16	35755969	35756169	+	934.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153550, intron 1 of 8)	intron (NM_153550, intron 1 of 8)	13287.0	NM_153550	224132.0	Mm.24094	NM_153550	ENSMUSG00000022848	Dirc2	RCC4	disrupted in renal carcinoma 2 (human)	protein-coding	0.218649591272691	0.708102091420058	0.399367830891566	0.226003757221384	0.766825753210255	0.23751556743498	0.549642490800329	0.521101010407425	0.896077372921038	0.631199638808162	1
Merged-chr13-100575547-2	chr13	100575447	100575647	+	577.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-22829.0	NM_001360539	18260.0	Mm.4807	NM_008756	ENSMUSG00000021638	Ocln	AI503564|Ocl	occludin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-143548681-4	chr5	143548585	143548785	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026050)	promoter-TSS (NM_026050)	-21.0	NM_133703	67238.0	Mm.383219	NM_026050	ENSMUSG00000083012	Fam220a	1500026F15Rik|2810453I06Rik|AW047776|Acpin1|Sipar	family with sequence similarity 220, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-154103775-4	chr1	154103672	154103872	+	906.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD-int|LTR|ERVL-MaLR	-97415.0	NM_001204908	100503355.0	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	Gm10178|Gm203	zinc finger protein 648	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-98171572-4	chr7	98171460	98171660	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007602, intron 1 of 12)	intron (NM_007602, intron 1 of 12)	-5634.0	NR_045972	330599.0	Mm.406608	NR_045969		Gm16938	-	predicted gene, 16938	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-21268433-4	chr14	21268309	21268509	+	978.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134079, intron 6 of 10)	RMER19B|LTR|ERVK	192257.0	NM_001243041	11534.0	Mm.188734	NM_134079	ENSMUSG00000039197	Adk	2310026J05Rik|5033405D03Rik|AI255373|AI987814|Ak	adenosine kinase	protein-coding	0.714211797349778	1.04659817331101	1.21263656288158	1.81561405261876	0.718502606619928	1.74946011792867	2.31095305691664	0.745294120366098	0.929838938068984	0.512106718950141	0.945270217532891
Merged-chr7-143054096-2	chr7	143053996	143054196	+	873.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_110354)	promoter-TSS (NR_110354)	-410.0	NR_110354	97423.0	Mm.5250	NM_133790	ENSMUSG00000059277	R74862	-	expressed sequence R74862	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-21733003-2	chr13	21732903	21733103	+	556.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-2031.0	NM_178210	319159.0		NM_178210	ENSMUSG00000067455	Hist1h4j	-	histone cluster 1, H4j	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-41160692-2	chr9	41160592	41160792	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2630.0	NM_176860	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	1.48267854605811	1.91651129529784	1.60091832005499	1.55755342467524	2.11841780079165	1.66758031235069	1.064096289927	1.42009732863941	-0.0205521799232118	0.985491433811909	0.998431161219273
Merged-chr18-74913909-3	chr18	74913810	74914010	+	772.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	47353.0	NM_010720	16891.0	Mm.299647	NM_010720	ENSMUSG00000053846	Lipg	3110013K01Rik|EL|lipase|mEDL	lipase, endothelial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-84858317-3	chr18	84858206	84858406	+	897.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001348159, intron 1 of 5)	intron (NM_001348159, intron 1 of 5)	6968.0	NM_001348159	109672.0	Mm.31018	NM_025797	ENSMUSG00000024646	Cyb5a	0610009N12Rik|Cyb5	cytochrome b5 type A (microsomal)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-120083933-2	chr6	120083833	120084033	+	911.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9447.0	NM_016718	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-137636851-2	chr5	137636751	137636951	+	566.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001168652, exon 5 of 18)	exon (NM_001168652, exon 5 of 18)	-4622.0	NM_001081962	751865.0	Mm.200763	NM_001081962	ENSMUSG00000079165	Sap25	-	sin3 associated polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91166687-2	chr2	91166587	91166787	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177719, intron 13 of 34)	intron (NM_001177719, intron 13 of 34)	12634.0	NM_001177720	228355.0	Mm.36410	NM_145527	ENSMUSG00000040687	Madd	9630059K23Rik|IG20	MAP-kinase activating death domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-55466470-4	chr12	55466373	55466573	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26174.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127816166-2	chr7	127816066	127816266	+	547.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_024414, intron 1 of 9)	intron (NM_024414, intron 1 of 9)	8365.0	NM_024414	56216.0	Mm.439759	NM_024414	ENSMUSG00000030806	Stx1b	Stx1b2|Stx1bl|Syn1b	syntaxin 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-20697167-4	chr14	20697061	20697261	+	929.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028428, intron 2 of 2)	intron (NM_028428, intron 2 of 2)	2193.0	NM_028428	73068.0	Mm.277552	NM_028428	ENSMUSG00000039357	Fut11	3110009G03Rik|AI317183	fucosyltransferase 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-21370804-4	chr11	21370728	21370928	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_139297)	promoter-TSS (NM_139297)	-199.0	NM_139297	216558.0	Mm.28877	NM_139297	ENSMUSG00000001891	Ugp2	UDPGP|UGPase	UDP-glucose pyrophosphorylase 2	protein-coding	2.74800482095018	3.4651928026455	1.71598053424303	2.71729782228326	1.97674795013285	1.78955800060439	3.31243018281876	2.73179743150127	-0.366608559894285	0.665489015396715	0.992380258859526
Merged-chr14-30622296-2	chr14	30622196	30622396	+	916.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011103, intron 1 of 17)	intron (NM_011103, intron 1 of 17)	3912.0	NM_011103	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119991000-2	chr11	119990900	119991100	+	582.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037754, intron 6 of 13)	GC_rich|Low_complexity|Low_complexity	-23767.0	NR_037225	100526518.0		NR_037225	ENSMUSG00000105524	Mir3065	mir-3065|mmu-mir-3065	microRNA 3065	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-31353292-2	chr16	31353192	31353392	+	624.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28002.0	NR_155301	102636590.0	Mm.45825	NR_155301		AV205837	-	expressed sequence AV205837	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141274786-4	chr4	141274686	141274886	+	877.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3653.0	NR_151527	100503810.0		NR_151527	ENSMUSG00000085395	Gm13056	-	predicted gene 13056	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99904575-4	chr15	99904470	99904670	+	882.6749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27088.0	NM_028180	72277.0	Mm.272766	NM_028180	ENSMUSG00000045350	1700030F18Rik	FAM186A	RIKEN cDNA 1700030F18 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-37232081-4	chr10	37231981	37232181	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-93155.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-108817401-3	chr8	108817302	108817502	+	766.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007496, intron 3 of 9)	Lx7|LINE|L1	102758.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-62059243-4	chr18	62059156	62059356	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	106181.0	NM_172628	225608.0	Mm.262320	NM_172628	ENSMUSG00000045629	Sh3tc2	D430044G18Rik	SH3 domain and tetratricopeptide repeats 2	protein-coding	4.41929907458431	2.66559621737238	2.73708283188333	4.43052133559097	5.25795214340346	4.58142878730744	2.92687913785836	4.76536336885812	1.01128122860291	0.0938026003202974	0.474611131334239
Merged-chr1-54870806-2	chr1	54870717	54870917	+	796.0	f0_balb.idr|f1_balb.idr	intron (NM_001081433, intron 1 of 27)	ORR1E|LTR|ERVL-MaLR	55570.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	-1.06143507733505	-1.04162019955508	-1.05291486968025	-1.05819092327156	-0.791893878288663	-1.03917259742211	-0.595621597270265	-1.05784875621095	2.7531441000867	0.384928181925071	1
Merged-chr1-170709681-4	chr1	170709601	170709801	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001081304, exon 16 of 16)	3' UTR (NM_001081304, exon 16 of 16)	65169.0	NM_177068	320078.0	Mm.287131	NM_177068	ENSMUSG00000038463	Olfml2b	1110018N05Rik|4832415H08Rik|AI467542	olfactomedin-like 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-177089798-2	chr1	177089698	177089898	+	766.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011785, intron 5 of 12)	intron (NM_011785, intron 5 of 12)	158969.0	NM_011785	23797.0	Mm.235194	NM_011785	ENSMUSG00000019699	Akt3	AI851531|D930002M15Rik|Nmf350	thymoma viral proto-oncogene 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36690796-2	chr1	36690696	36690896	+	576.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009942)	promoter-TSS (NM_009942)	-691.0	NM_009942	12859.0	Mm.180182	NM_009942	ENSMUSG00000061518	Cox5b	-	cytochrome c oxidase subunit Vb	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-55661814-1	chr16	55661714	55661914	+	614.5	f0_balb.idr	Intergenic	Intergenic	160324.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99477642-2	chr15	99477542	99477742	+	708.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Arthur1|DNA|hAT-Tip100	-2912.0	NM_029236	75284.0	Mm.32826	NM_029236	ENSMUSG00000037525	Bcdin3d	4930556P03Rik|AV138748	BCDIN3 domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-119462757-4	chr13	119462675	119462875	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113550)	promoter-TSS (NM_001113550)	16.0	NM_001360805	67392.0	Mm.390641	NM_026127	ENSMUSG00000062822	4833420G17Rik	2210017J06Rik|5730533D17Rik|AW107518|C85193	RIKEN cDNA 4833420G17 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4001726-2	chr19	4001626	4001826	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025529, intron 3 of 3)	intron (NM_025529, intron 3 of 3)	1146.0	NM_025529	66387.0	Mm.259222	NM_025529	ENSMUSG00000110949	Nudt8	2310039H17Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-78244728-4	chr10	78244629	78244829	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081055)	promoter-TSS (NM_001081055)	-87.0	NM_001081055	216131.0	Mm.27539	NM_001081055	ENSMUSG00000000374	Trappc10	B230307C21Rik|Gm870|Tmem1|b2b2416Clo|b2b2613Clo	trafficking protein particle complex 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126495514-2	chr8	126495414	126495614	+	902.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-20449.0	NM_001159907	212728.0	Mm.482479	NM_001159907	ENSMUSG00000090290	Tarbp1	Gm17296|Gm179	TAR RNA binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72353400-2	chr6	72353300	72353500	+	761.333374	f1_balb.idr|f1_c57bl6.idr	TTS (NM_026696)	TTS (NM_026696)	-2083.0	NM_144916	232086.0	Mm.491165	NM_144916	ENSMUSG00000055912	Tmem150a	BC014685|Tmem150	transmembrane protein 150A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-23993702-4	chr17	23993598	23993798	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_133731, exon 6 of 6)	3' UTR (NM_133731, exon 6 of 6)	4402.0	NM_133731	70835.0	Mm.157351	NM_133731	ENSMUSG00000045027	Prss22	4733401N09Rik|BSSP-4|SP001LA	protease, serine 22	protein-coding	4.57144662673427	5.36728845751896	5.0022522650666	5.56522032988728	4.0809321294101	5.02744490391451	4.83261594605062	5.25946343329263	-0.372941547367594	0.311745301960242	0.813466753570896
Merged-chr3-60080782-4	chr3	60080667	60080867	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1102.0	NM_032400	84112.0	Mm.125110	NM_032400	ENSMUSG00000027762	Sucnr1	Gpr91	succinate receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-75586452-4	chr10	75586409	75586609	+	985.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008116)	TTS (NM_008116)	-2872.0	NM_011820	23887.0	Mm.257927	NM_011820	ENSMUSG00000006344	Ggt5	AI551243|GGL|GGT-REL|Ggtla1	gamma-glutamyltransferase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-25210486-2	chr12	25210386	25210586	+	780.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC3|LINE|L1	81312.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-24902993-4	chr7	24902890	24903090	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008488)	promoter-TSS (NM_008488)	4.0	NM_001130151	16801.0	Mm.3181	NM_008488	ENSMUSG00000040940	Arhgef1	Lbcl2|Lsc	Rho guanine nucleotide exchange factor (GEF) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-95546821-2	chr10	95546721	95546921	+	672.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_027722)	TTS (NM_027722)	12500.0	NR_037212	100526463.0		NR_037212	ENSMUSG00000092867	Mir3058	mir-3058|mmu-mir-3058	microRNA 3058	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10184361-3	chr19	10184212	10184412	+	891.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146094, intron 1 of 11)	intron (NM_146094, intron 1 of 11)	1424.0	NM_146094	76267.0	Mm.30158	NM_146094	ENSMUSG00000010663	Fads1	0710001O03Rik|A930006B21Rik|AI317215|DSD	fatty acid desaturase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35913168-2	chr17	35913068	35913268	+	847.900024	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347380, intron 1 of 3)	intron (NM_001347380, intron 1 of 3)	-3093.0	NM_001357865	73242.0	Mm.273155	NM_028476	ENSMUSG00000024426	Atat1	0610011P08Rik|2610008K08Rik|2610110G12Rik|3110080J08Rik|Mec17|TAT	alpha tubulin acetyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-59207650-2	chr3	59207550	59207750	+	714.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_028808)	TTS (NM_028808)	3232.0	NM_028808	74191.0	Mm.90067	NM_028808	ENSMUSG00000036362	P2ry13	2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174	purinergic receptor P2Y, G-protein coupled 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-62645089-2	chr11	62644989	62645189	+	705.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198861, intron 1 of 3)	intron (NM_198861, intron 1 of 3)	2960.0	NM_001357955	192976.0	Mm.339972	NM_198861	ENSMUSG00000046417	Lrrc75a	Fam211a	leucine rich repeat containing 75A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-16213479-4	chr4	16213375	16213575	+	976.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045765, intron 3 of 6)	Lx8b|LINE|L1	49365.0	NR_045765	100415915.0	Mm.387180	NR_045765	ENSMUSG00000085112	A530072M11Rik	-	RIKEN cDNA gene A530072M11	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99670692-3	chr15	99670578	99670778	+	623.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_009597, exon 1 of 12)	5' UTR (NM_009597, exon 1 of 12)	301.0	NM_009597	11419.0	Mm.440107	NM_009597	ENSMUSG00000023017	Asic1	AI843610|ASIC|ASIC1a|Accn2|B530003N02Rik|BNaC2	acid-sensing (proton-gated) ion channel 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-55776986-3	chr16	55776882	55777082	+	896.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	45156.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78897582-1	chr15	78897482	78897682	+	573.0	f1_balb.idr	Intergenic	Intergenic	-2186.0	NR_133564	20401.0	Mm.4462	NM_009164	ENSMUSG00000022436	Sh3bp1	3BP-1	SH3-domain binding protein 1	protein-coding	-2.18375600819439	-2.15556918946382	-2.16409311609999	-2.17109492323169	-2.18177734563694	-2.01960173909294	-2.16216348594872	-2.16984160310277	0.759018020146679	0.829933115115583	1
Merged-chr11-83578534-4	chr11	83578443	83578643	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011338)	promoter-TSS (NM_011338)	93.0	NM_011338	20308.0	Mm.416125	NM_011338	ENSMUSG00000019122	Ccl9	CCF18|MRP-2|Scya10|Scya9	chemokine (C-C motif) ligand 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-119674993-4	chr2	119674866	119675066	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030112)	promoter-TSS (NM_030112)	-102.0	NM_030112	76246.0	Mm.33437	NM_030112	ENSMUSG00000027304	Rtf1	2900005O08Rik|6530416A09Rik|AI853581|AU043144|AW553985|Gtl7|cbp82	RTF1, Paf1/RNA polymerase II complex component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-119325729-4	chr13	119325613	119325813	+	893.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	83298.0	NM_008710	18115.0	Mm.132584	NM_008710	ENSMUSG00000116207	Nnt	4930423F13Rik|AI323702|BB168308	nicotinamide nucleotide transhydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-114707775-4	chr5	114707662	114707862	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029992)	promoter-TSS (NM_029992)	-17.0	NM_029992	77832.0	Mm.239698	NM_029992	ENSMUSG00000002486	Tchp	A930031F18Rik|AV279199	trichoplein, keratin filament binding	protein-coding	1.15909314608368	2.62911546974184	2.91126842998246	1.71945482481785	1.63698717044844	1.61124852507421	2.93515493344246	3.34452144530815	0.630845744141426	0.527398415883589	0.948839578239191
Merged-chr11-3170688-2	chr11	3170587	3170787	+	1000.0	f0_balb.idr|f1_balb.idr	exon (NM_030207, exon 7 of 33)	exon (NM_030207, exon 7 of 33)	22776.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55825675-3	chr19	55825600	55825800	+	930.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_138565, intron 4 of 15)	intron (NR_138565, intron 4 of 15)	-69621.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	2.44405755129872	2.01970041391962	2.28418709954671	2.66845219803071	2.98609671551837	2.85761566841702	2.55693485409748	2.08578949309727	0.618232282538996	0.429309577992875	0.903553324188723
Merged-chr1-189689198-3	chr1	189689081	189689281	+	712.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1095.0	NM_001081363	108000.0	Mm.129746	NM_001081363	ENSMUSG00000026605	Cenpf	6530404A22Rik|AI325968|CENF|Lek1|PRO1779|mitosin	centromere protein F	protein-coding	3.67882628944651	3.9998124157415	3.22039838686106	2.38214698561695	4.43690752179686	3.15358907032188	1.83633849901298	1.47082312047269	-0.269476478627938	0.836058693034033	0.998431161219273
Merged-chr15-100766276-1	chr15	100766176	100766376	+	951.0	f1_balb.idr	intron (NM_021530, intron 1 of 24)	intron (NM_021530, intron 1 of 24)	4529.0	NM_021530	59033.0	Mm.209856	NM_021530	ENSMUSG00000023032	Slc4a8	AW493845|C230026C11|NDCBE|kNBC-3	solute carrier family 4 (anion exchanger), member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-151996668-1	chr1	151996568	151996768	+	550.0	f1_balb.idr	intron (NM_197990, intron 2 of 5)	Lx8|LINE|L1	93652.0	NM_197990	69399.0	Mm.278031	NM_197990	ENSMUSG00000032666	1700025G04Rik	2610510E02Rik|2900042O04Rik	RIKEN cDNA 1700025G04 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-77520226-2	chr11	77520126	77520326	+	593.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_026185, exon 2 of 2)	3' UTR (NM_026185, exon 2 of 2)	5109.0	NM_026185	67477.0	Mm.432526	NM_026185	ENSMUSG00000000686	Abhd15	1300007F04Rik	abhydrolase domain containing 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-103773017-2	chr3	103772917	103773117	+	680.400024	f1_balb.idr|f1_c57bl6.idr	intron (NM_010432, intron 2 of 15)	intron (NM_010432, intron 2 of 15)	18258.0	NM_001301306	15257.0	Mm.20827	NM_010432	ENSMUSG00000008730	Hipk1	1110062K04Rik|Myak	homeodomain interacting protein kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-24819928-2	chr13	24819828	24820028	+	560.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025790, intron 2 of 2)	intron (NM_025790, intron 2 of 2)	11561.0	NM_025790	66834.0	Mm.2125	NM_025790	ENSMUSG00000006717	Acot13	0610006O17Rik|Them2	acyl-CoA thioesterase 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-76959069-2	chr14	76958958	76959158	+	823.916626	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	77559.0	NM_172488	210808.0	Mm.89278	NM_172488	ENSMUSG00000044350	Lacc1	9030625A04Rik	laccase domain containing 1	protein-coding	2.32677954734912	1.69587832724042	1.62992919171743	1.57603284434805	2.9200170543106	2.36736389399329	3.95974495940285	3.52302945955056	2.87537412761055	0.000567813980522134	0.0123866038878265
Merged-chr16-20098151-4	chr16	20098062	20098262	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029436, intron 1 of 7)	CpG	608.0	NM_029436	75785.0	Mm.392450	NM_029436	ENSMUSG00000062901	Klhl24	1110046J11Rik|4930429H24Rik|6530402O20Rik|C85082	kelch-like 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-30666074-2	chr5	30665974	30666174	+	779.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302130)	promoter-TSS (NM_001302130)	-812.0	NM_007681	12615.0	Mm.290563	NM_007681	ENSMUSG00000029177	Cenpa	Cenp-A	centromere protein A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-20458882-2	chr11	20458782	20458982	+	585.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-84371.0	NM_021372	58172.0	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83649532-4	chr11	83649430	83649630	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011337)	promoter-TSS (NM_011337)	-152.0	NM_011337	20302.0	Mm.1282	NM_011337	ENSMUSG00000000982	Ccl3	AI323804|G0S19-1|LD78alpha|MIP-1alpha|MIP1-(a)|MIP1-alpha|Mip1a|Scya3	chemokine (C-C motif) ligand 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-10873762-4	chr15	10873656	10873856	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44705.0	NR_040357	100502601.0	Mm.399434	NR_040357		Gm19276	-	predicted gene, 19276	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-118137691-4	chr14	118137576	118137776	+	914.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021434, intron 1 of 8)	intron (NM_021434, intron 1 of 8)	549.0	NM_021434	58245.0	Mm.275411	NM_021434	ENSMUSG00000022131	Gpr180	AB041545|E130016I23Rik|Itr	G protein-coupled receptor 180	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-45250990-2	chr9	45250890	45251090	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15717.0	NR_106054	102466803.0		NR_106054	ENSMUSG00000098361	Mir7086	Gm27643|mmu-mir-7086	microRNA 7086	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-53437436-4	chr5	53437318	53437518	+	970.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-118361.0	NM_001080928	19664.0	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-9575181-2	chr10	9575081	9575281	+	725.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	100027.0	NM_177271	320825.0	Mm.101115	NM_177271	ENSMUSG00000060487	Samd5	E130306M17Rik	sterile alpha motif domain containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115813157-2	chr11	115813057	115813257	+	580.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_080643, intron 1 of 19)	intron (NM_080643, intron 1 of 19)	435.0	NM_080643	140721.0	Mm.383737	NM_080643	ENSMUSG00000034471	Caskin2	1600028L06Rik|mKIAA1139	CASK-interacting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111047461-2	chr12	111047361	111047561	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198023, intron 2 of 11)	B1_Mus1|SINE|Alu	7663.0	NM_198023	217864.0	Mm.23808	NM_198023	ENSMUSG00000037896	Rcor1	5730409O11|6720480E22Rik|AU042633|D12Wsu95e|Rocr1|mKIAA0071	REST corepressor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-112266391-4	chr2	112266301	112266501	+	996.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133649)	promoter-TSS (NM_133649)	87.0	NM_133649	107723.0	Mm.491155	NM_133648	ENSMUSG00000027130	Slc12a6	9530023I19Rik|KCC3|gaxp	solute carrier family 12, member 6	protein-coding	1.88636636455296	1.97785320493419	1.27820462239011	0.85157652150157	1.74629267833719	1.50381195747382	0.869399934398055	0.85402681772217	-0.888522778788223	0.517482481795189	0.947641799425091
Merged-chr14-9660088-4	chr14	9659984	9660184	+	849.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360141, intron 8 of 9)	L1_Mus3|LINE|L1	-224011.0	NR_030680	100042415.0	Mm.235938	NR_030680	ENSMUSG00000089686	Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-59810905-3	chr11	59810822	59811022	+	788.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271356)	promoter-TSS (NM_001271356)	842.0	NR_045686	100504104.0	Mm.391737	NR_045686	ENSMUSG00000087249	Gm16062	-	predicted gene 16062	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-128133090-2	chr6	128132990	128133190	+	560.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175414, intron 1 of 8)	intron (NM_175414, intron 1 of 8)	10488.0	NM_175414	109246.0	Mm.21814	NM_175414	ENSMUSG00000030352	Tspan9	6720474K14Rik|9430079M16Rik|AU018597|Tspan-9	tetraspanin 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-72710006-4	chr14	72709906	72710106	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207636)	promoter-TSS (NM_207636)	-3.0	NM_207636	319448.0	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	4.34630306294087	3.60923416746164	3.66026481735013	3.38654547060794	4.37804365043351	3.72762586335124	3.91185506152758	3.40443082233512	0.138210000091356	0.785061037096858	0.998431161219273
Merged-chr11-106122158-4	chr11	106122055	106122255	+	831.783325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011947, intron 5 of 15)	(TTTTG)n|Simple_repeat|Simple_repeat	37253.0	NM_011947	26406.0	Mm.27041	NM_011947	ENSMUSG00000020700	Map3k3	AW548911|MAPKKK3|Mekk3|mKIAA4031	mitogen-activated protein kinase kinase kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69514103-2	chr11	69514003	69514203	+	610.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081330, intron 12 of 85)	intron (NM_001081330, intron 12 of 85)	35005.0	NM_001081330	327954.0	Mm.247478	NM_177617	ENSMUSG00000005237	Dnah2	2900022L05Rik|4930564A01|D130094J20|D330014H01Rik|Dnahc2|Dnhd3	dynein, axonemal, heavy chain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-51934727-4	chr1	51934617	51934817	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18739.0	NM_010863	17912.0	Mm.3390	NM_010863	ENSMUSG00000018417	Myo1b	AA406997|MIH-L|MMIa	myosin IB	protein-coding	5.11643759798984	5.09701089249304	4.712188696022	5.38172214535815	5.23447697921023	5.91368200020877	5.46443585184781	6.08107588125569	0.700418725671771	0.0215139992530872	0.187966323820114
Merged-chr5-143059488-3	chr5	143059385	143059585	+	804.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359851, intron 12 of 15)	intron (NM_001359851, intron 12 of 15)	53535.0	NM_207110	108086.0	Mm.381440	NM_080561	ENSMUSG00000045078	Rnf216	2810055G22Rik|AI647468|AU019462|C86502|F830018F18Rik|TRIAD3|UIP83|Ubce7ip1	ring finger protein 216	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-94582258-3	chr6	94582163	94582363	+	790.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026255, intron 6 of 9)	intron (NM_026255, intron 6 of 9)	24152.0	NR_106008	102466992.0		NR_106008	ENSMUSG00000098531	Mir7041	Gm27872|mmu-mir-7041	microRNA 7041	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102302425-4	chr12	102302288	102302488	+	989.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161365, intron 1 of 9)	intron (NM_001161365, intron 1 of 9)	18747.0	NM_001161365	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34251212-2	chr17	34251112	34251312	+	789.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-12015.0	NM_207105	14961.0	Mm.254067	NM_207105	ENSMUSG00000073421	H2-Ab1	AI845868|Abeta|H-2Ab|H2-Ab|I-Abeta|IAb|Ia-2|Ia2|Rmcs1	histocompatibility 2, class II antigen A, beta 1	protein-coding	2.78920283516723	3.19898947945166	4.70425117555329	3.1024950722984	4.51647758413498	4.88225528851511	4.18960515078704	5.3036852145393	1.43647842361631	0.00644624469770386	0.0804410437396117
Merged-chr19-24556256-4	chr19	24556211	24556411	+	777.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008846)	promoter-TSS (NM_008846)	-439.0	NM_008846	18719.0	Mm.217214	NM_008846	ENSMUSG00000024867	Pip5k1b	PI4P5K-I[b]|PIP5K1-beta|PIP5KIbeta|Pipk5b|STM7	phosphatidylinositol-4-phosphate 5-kinase, type 1 beta	protein-coding	0.857252585831088	0.586359347687429	1.50690044683251	0.567368727788439	0.723111371258515	0.98898840955608	0.781252156226277	1.37257757742532	0.184037472179357	0.903758421829654	0.998431161219273
Merged-chr3-152481778-2	chr3	152481678	152481878	+	610.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081277, intron 10 of 13)	intron (NM_001081277, intron 10 of 13)	85094.0	NM_001287139	108946.0	Mm.379292	NM_198416	ENSMUSG00000039068	Zzz3	3110065C23Rik|6430567E01Rik|AA408566|AI481057|AW556059|R75514	zinc finger, ZZ domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-101733523-2	chr2	101733438	101733638	+	984.0	f0_balb.idr|f1_balb.idr	intron (NM_001355625, intron 7 of 8)	intron (NM_001355625, intron 7 of 8)	55118.0	NM_001303273	22034.0	Mm.292729	NM_009424	ENSMUSG00000027164	Traf6	2310003F17Rik|AI851288|C630032O20Rik	TNF receptor-associated factor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45125197-2	chr7	45125097	45125297	+	782.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013725)	promoter-TSS (NM_013725)	-808.0	NM_013725	27207.0	Mm.196538	NM_013725	ENSMUSG00000003429	Rps11	-	ribosomal protein S11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-170320370-2	chr2	170320270	170320470	+	579.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D11|SINE|Alu	-35991.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-100406273-3	chr15	100406137	100406337	+	933.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008732, intron 6 of 16)	intron (NM_008732, intron 6 of 16)	16818.0	NM_001146161	18174.0	Mm.234608	NM_008732	ENSMUSG00000023030	Slc11a2	DCT1|DMT1|Nramp2|mk|van	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2	protein-coding	0.817292925056293	0.870989935254289	1.88155591635851	1.50651679192875	1.31213621125127	1.87319602974361	1.69162274538196	0.842746920740191	0.435167538620487	0.75283571160653	0.998431161219273
Merged-chr4-45879198-2	chr4	45879094	45879294	+	883.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001305421, intron 12 of 18)	L1_Mur3|LINE|L1	-11109.0	NM_198660	381522.0	Mm.54220	NM_198660	ENSMUSG00000035539	Ccdc180	E230008N13Rik|Gm1025	coiled-coil domain containing 180	protein-coding	1.31603397575667	1.48408440794873	2.04291176774018	1.38876344506809	1.44365612750729	1.4958532205487	0.893111880339982	0.879418602661562	-1.39341007018789	0.275874706379782	0.77982362793126
Merged-chr15-81926255-4	chr15	81926104	81926304	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030229)	promoter-TSS (NM_030229)	9.0	NM_030229	78929.0	Mm.215115	NM_030229	ENSMUSG00000022476	Polr3h	5031409G22Rik|RPC8	polymerase (RNA) III (DNA directed) polypeptide H	protein-coding	6.05605822586987	5.86232609821616	5.38734965717245	5.56296046761335	6.01965864316198	5.37996752146726	6.37134735068458	6.03477255057239	0.28204774414907	0.301526223690024	0.802984233168001
Merged-chr6-83087310-3	chr6	83087269	83087469	+	783.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010692, intron 1 of 1)	intron (NM_010692, intron 1 of 1)	1004.0	NM_010692	16815.0	Mm.20359	NM_010692	ENSMUSG00000034968	Lbx2	Lbx2h	ladybird homeobox 2	protein-coding	1.51450999081409	1.08623714837689	2.35867485397548	1.44228797033956	1.52666527755326	2.10123998803484	1.65300095549766	1.60231144917299	0.0908774300214511	0.93485961956156	0.998431161219273
Merged-chr4-129822086-2	chr4	129821986	129822186	+	575.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164745, intron 1 of 5)	intron (NM_001164745, intron 1 of 5)	1378.0	NM_001164745	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-99708889-2	chr5	99708789	99708989	+	558.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 1 of 3)	intron (NR_030692, intron 1 of 3)	20171.0	NR_030692	319818.0	Mm.295233	NR_030692	ENSMUSG00000089809	A930011G23Rik	-	RIKEN cDNA A930011G23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-37290224-4	chr10	37290120	37290320	+	944.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-151294.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114665710-2	chr11	114665610	114665810	+	658.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-2833.0	NM_023372	67671.0	Mm.238817	NM_023372	ENSMUSG00000057322	Rpl38	0610025G13Rik|Rbt|Ts|Tss	ribosomal protein L38	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-4499270-1	chr7	4499170	4499370	+	541.0	f1_balb.idr	intron (NM_029834, intron 1 of 21)	intron (NM_029834, intron 1 of 21)	2410.0	NM_029834	232807.0	Mm.360391	NM_029834	ENSMUSG00000019254	Ppp1r12c	2410197A17Rik|AI839747|B430101M08|Mbs85	protein phosphatase 1, regulatory (inhibitor) subunit 12C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124328662-2	chr5	124328562	124328762	+	958.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001277867)	promoter-TSS (NM_001277867)	573.0	NM_001134717	72650.0	Mm.121658	NM_028310	ENSMUSG00000047635	2810006K23Rik	-	RIKEN cDNA 2810006K23 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101928184-2	chr11	101928084	101928284	+	664.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24237.0	NR_045806	73887.0	Mm.159084	NR_045806	ENSMUSG00000071818	4930417O22Rik	-	RIKEN cDNA 4930417O22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-73325652-1	chr12	73325552	73325752	+	543.0	f1_balb.idr	intron (NM_001037717, intron 5 of 15)	intron (NM_001037717, intron 5 of 15)	38804.0	NM_001037717	625098.0	Mm.32075	NM_001037717	ENSMUSG00000044712	Slc38a6	AW322671|EG625098	solute carrier family 38, member 6	protein-coding	-0.197006153276707	-0.32726614815467	0.339079728401382	-0.334939206175438	-0.339657752964525	-0.326289232178295	0.133540554564414	-0.334355685888218	-0.910960467429408	0.713840778676095	1
Merged-chr11-103419821-4	chr11	103419735	103419935	+	918.216675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7171.0	NM_183034	353047.0	Mm.18556	NM_183034	ENSMUSG00000034247	Plekhm1	AP162|B2|BC038943|D330036J23Rik	pleckstrin homology domain containing, family M (with RUN domain) member 1	protein-coding	0.377684697418611	-0.204701617990514	-0.210225047139442	-0.214505353929931	0.693859305272258	-0.203460260861301	-0.209004478751046	-0.213756385794684	0.871256042810368	0.728637662792114	1
Merged-chr5-88595684-4	chr5	88595521	88595721	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359208, intron 2 of 13)	intron (NM_001359208, intron 2 of 13)	12108.0	NM_001359209	52822.0	Mm.270469	NM_027530	ENSMUSG00000029291	Rufy3	2810428M05Rik|6330416M07Rik|AW455998|AW538594|D5Bwg0860e|Ripx|Rpipx	RUN and FYVE domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135478294-4	chr5	135478280	135478480	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146001, intron 1 of 30)	B3|SINE|B2	66742.0	NM_146001	215114.0	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-11015445-2	chr16	11015345	11015545	+	648.666626	f1_balb.idr|f1_c57bl6.idr	TTS (NR_040518)	TTS (NR_040518)	6547.0	NR_040518	100043147.0	Mm.489001	NR_040518	ENSMUSG00000097056	Gm4262	-	predicted gene 4262	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-9166158-2	chr9	9166058	9166258	+	927.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_027823, intron 2 of 22)	intron (NM_027823, intron 2 of 22)	-70130.0	NR_045754	100579151.0	Mm.412450	NR_045754	ENSMUSG00000085253	Gm16833	-	predicted gene, 16833	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-31600052-2	chr15	31599952	31600152	+	839.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007637, intron 1 of 10)	intron (NM_007637, intron 1 of 10)	1487.0	NM_001348035	12465.0	Mm.282158	NM_007637	ENSMUSG00000022234	Cct5	CCT-epsilon|Ccte|TCP-1-epsilon|TCPE|mKIAA0098	chaperonin containing Tcp1, subunit 5 (epsilon)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-119481526-2	chr6	119481426	119481626	+	787.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_133940, exon 1 of 1)	3' UTR (NM_133940, exon 1 of 1)	1858.0	NM_133940	101358.0	Mm.125477	NM_133940	ENSMUSG00000030019	Fbxl14	AW322056|Fbx14l	F-box and leucine-rich repeat protein 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70949699-4	chr14	70949591	70949791	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302094, intron 3 of 7)	intron (NM_001302094, intron 3 of 7)	59584.0	NM_001302094	14586.0	Mm.32619	NM_008115	ENSMUSG00000022103	Gfra2	-	glial cell line derived neurotrophic factor family receptor alpha 2	protein-coding	2.08019396786846	1.24440943594354	2.02462192102236	1.35835325985553	2.02784413455365	1.62546156056157	0.983915320774299	0.966723446564072	-0.727856823605604	0.55868558442034	0.960321604678676
Merged-chr7-4524436-4	chr7	4524333	4524533	+	837.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033548, intron 9 of 11)	B3A|SINE|B2	-1905.0	NM_009406	21954.0	Mm.27674	NM_009406	ENSMUSG00000035458	Tnni3	Tn1|cTnI	troponin I, cardiac 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-62756018-4	chr5	62755908	62756108	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178407, intron 1 of 32)	intron (NM_178407, intron 1 of 32)	10169.0	NM_178407	212285.0	Mm.244403	NM_178407	ENSMUSG00000037999	Arap2	Centd1|Gm148|mKIAA0580	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10947417-4	chr19	10947271	10947471	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023731, intron 1 of 3)	intron (NM_023731, intron 1 of 3)	1895.0	NM_023731	108673.0	Mm.294908	NM_023731	ENSMUSG00000024732	Ccdc86	4933411H20Rik|6720480F16Rik|D19Ertd678e	coiled-coil domain containing 86	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-97219653-3	chr13	97219551	97219751	+	621.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3A|LINE|L1	-21294.0	NM_010422	15212.0	Mm.27816	NM_010422	ENSMUSG00000021665	Hexb	-	hexosaminidase B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-14189295-4	chr10	14189194	14189394	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	222915.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	5.38249129713244	5.52273624434548	5.27366252110318	5.01259374673214	4.98028384648797	4.76992243408653	4.98792538675571	5.25962454769016	-0.344826505133829	0.253531966707881	0.751694505775946
Merged-chr17-5753145-6	chr17	5753013	5753213	+	877.305542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_146073, exon 9 of 9)	3' UTR (NM_146073, exon 9 of 9)	-45544.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-33908568-3	chr2	33908468	33908668	+	962.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20622.0	NM_175184	72543.0	Mm.254914	NM_175184	ENSMUSG00000038740	Mvb12b	2610200O14Rik|2610528K11Rik|AI414895|Fam125b	multivesicular body subunit 12B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-77423838-2	chr8	77423738	77423938	+	827.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_030113, intron 5 of 22)	intron (NM_030113, intron 5 of 22)	-93218.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-47318982-3	chr18	47318862	47319062	+	753.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311097, intron 1 of 17)	intron (NM_001311097, intron 1 of 17)	49906.0	NM_018744	20358.0	Mm.40909	NM_018744	ENSMUSG00000019647	Sema6a	A730020P05Rik|AI851735|Sema6A-1|Semaq|VIa	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-13601775-2	chr8	13601675	13601875	+	689.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 4 of 23)	intron (NM_009025, intron 4 of 23)	-39314.0	NM_001080781	66501.0	Mm.46136	NM_025601	ENSMUSG00000031452	1700029H14Rik	-	RIKEN cDNA 1700029H14 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-17932165-1	chr16	17932065	17932265	+	545.0	f1_c57bl6.idr	Intergenic	Intergenic	-3946.0	NM_153150	13358.0	Mm.229291	NM_153150	ENSMUSG00000003528	Slc25a1	1300019P08Rik|2610100G11Rik|AI194714|Ctp|Dgsj|Slc20a3	solute carrier family 25 (mitochondrial carrier, citrate transporter), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-141018474-4	chr5	141018369	141018569	+	950.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17873.0	NM_175362	108723.0	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-27545235-4	chr7	27545123	27545323	+	960.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_011116, exon 2 of 14)	5' UTR (NM_011116, exon 2 of 14)	7995.0	NM_011116	18807.0	Mm.6483	NM_011116	ENSMUSG00000003363	Pld3	Sam-9	phospholipase D family, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-31192420-2	chr5	31192359	31192559	+	862.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153680)	promoter-TSS (NM_153680)	680.0	NM_001127355	13667.0	Mm.29394	NM_010122	ENSMUSG00000029145	Eif2b4	Eif2b	eukaryotic translation initiation factor 2B, subunit 4 delta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27858276-4	chr17	27858153	27858353	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080769, intron 1 of 20)	RSINE1|SINE|B4	1746.0	NM_001080769	224648.0	Mm.291291	NM_001080769	ENSMUSG00000039512	Uhrf1bp1	1110020K19Rik|AA408674|F830021D11Rik|mKIAA4127	UHRF1 (ICBP90) binding protein 1	protein-coding	-0.173152844584279	-0.302534706255963	-0.130116834711261	-0.310252157328583	0.47823082813851	-0.301551859528306	-0.125534770279707	-0.309665397220765	2.01037758726275	0.389649788644304	1
Merged-chr3-119806311-4	chr3	119806185	119806385	+	981.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-22897.0	NM_019550	56195.0	Mm.29966	NM_019550	ENSMUSG00000028134	Ptbp2	Ptb2|brPTB|nPTB	polypyrimidine tract binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-58325030-2	chr10	58324930	58325130	+	920.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026148, intron 1 of 9)	L1MB3|LINE|L1	1483.0	NM_026148	110829.0	Mm.57734	NM_026148	ENSMUSG00000019920	Lims1	2310016J22Rik|4921524A02Rik|AI507642|AU021743|AW551584|C430041B13Rik|Lims1l|PINCH|PINCH1	LIM and senescent cell antigen-like domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-144263777-2	chr2	144263677	144263877	+	699.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_024225, intron 1 of 12)	Lx9|LINE|L1	2425.0	NR_030762	100313519.0	Mm.453538	NR_030762	ENSMUSG00000077714	Snord17	MBI-43	small nucleolar RNA, C/D box 17	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-126198912-2	chr4	126198812	126199012	+	565.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356455, intron 1 of 11)	intron (NM_001356455, intron 1 of 11)	2095.0	NM_001356456	230753.0	Mm.29813	NM_146153	ENSMUSG00000043962	Thrap3	9330151F09Rik|B230333E16Rik|Trap150	thyroid hormone receptor associated protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3518033-2	chr4	3517916	3518116	+	710.0	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-19074.0	NR_037306	100499523.0		NR_037306	ENSMUSG00000094253	Mir3471-2	mmu-mir-3471-2	microRNA 3471-2	ncRNA	0.309397386548772	0.339258596673486	0.329618992071226	0.322088928517545	1.06111376857019	0.341413537100769	1.30090435739821	1.05129020439773	4.5824060819929	0.0147105904820361	1
Merged-chr14-70889224-3	chr14	70889186	70889386	+	810.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008115)	promoter-TSS (NM_008115)	-821.0	NM_001302095	14586.0	Mm.32619	NM_008115	ENSMUSG00000022103	Gfra2	-	glial cell line derived neurotrophic factor family receptor alpha 2	protein-coding	1.35676689350198	0.840524871347917	1.79416953097265	1.43762997651701	1.56364927089928	0.843693876461482	1.4976280511436	0.817121971248247	-0.618998184557268	0.66017781214494	0.990101673764374
Merged-chr2-25186010-6	chr2	25185946	25186146	+	674.361084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	5288.0	NM_025980	67122.0	Mm.46539	NM_025980	ENSMUSG00000078202	Nrarp	2700054M22Rik	Notch-regulated ankyrin repeat protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90547994-3	chr2	90547896	90548096	+	584.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	32651.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.358840670450922	0.030386665139799	0.0258736590340959	0.41187442560053	0.366817426592572	0.0314077314751966	0.0268666928548457	0.417380277679181	0.0348560535760958	0.986867547413466	1
Merged-chr1-127982222-3	chr1	127982094	127982294	+	848.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285945, intron 12 of 20)	B4A|SINE|B4	113421.0	NM_178690	226407.0	Mm.489713	NM_178690	ENSMUSG00000036104	Rab3gap1	1700003B17Rik|4732493F09Rik|AL117896|Rab3gap|p130	RAB3 GTPase activating protein subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-113326757-4	chr6	113326630	113326830	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_149720)	promoter-TSS (NR_149720)	-246.0	NR_149720	18294.0	Mm.43612	NM_010957	ENSMUSG00000030271	Ogg1	Mmh	8-oxoguanine DNA-glycosylase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-143403839-4	chr5	143403759	143403959	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025841)	promoter-TSS (NM_025841)	39.0	NM_025841	66913.0	Mm.181880	NM_025841	ENSMUSG00000079111	Kdelr2	1110007A14Rik	KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-5108257-2	chr15	5108157	5108357	+	621.875	f1_balb.idr|f1_c57bl6.idr	exon (NM_001163138, exon 2 of 4)	exon (NM_001163138, exon 2 of 4)	276.0	NM_001163138	239319.0	Mm.31252	NM_001163138	ENSMUSG00000041849	Card6	D730008L15	caspase recruitment domain family, member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100394805-2	chr11	100394705	100394905	+	620.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010593, intron 1 of 13)	intron (NM_010593, intron 1 of 13)	2985.0	NM_010593	16480.0	Mm.299774	NM_010593	ENSMUSG00000001552	Jup	Ctnng|D930025P04Rik|PG	junction plakoglobin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-118170364-4	chr7	118170262	118170462	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001031814, intron 31 of 62)	RLTR13B1|LTR|ERVK	-40737.0	NM_019419	54208.0	Mm.29924	NM_019419	ENSMUSG00000030654	Arl6ip1	AIP-6|AL022945|ARMER|AU042858|Aip-1|Arl6ip|C85138|mKIAA0069	ADP-ribosylation factor-like 6 interacting protein 1	protein-coding	3.01953739144611	2.919031688045	2.71048274880021	2.93694436390157	2.4069579040592	3.31607684093694	2.46534167946037	2.85932975774528	-0.170142267803072	0.803320289455659	0.998431161219273
Merged-chr3-27656942-4	chr3	27656841	27657041	+	964.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173182, intron 1 of 25)	intron (NM_173182, intron 1 of 25)	53511.0	NM_001356953	72007.0	Mm.38832	NM_173182	ENSMUSG00000039286	Fndc3b	1600019O04Rik|AW550168|Fad104|mKIAA4164	fibronectin type III domain containing 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-31108206-2	chr5	31108106	31108306	+	601.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177677)	promoter-TSS (NM_177677)	38.0	NM_001347323	22784.0	Mm.1396	NM_011773	ENSMUSG00000029151	Slc30a3	Znt3	solute carrier family 30 (zinc transporter), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-77931069-4	chr9	77930998	77931198	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134255, intron 1 of 7)	intron (NM_134255, intron 1 of 7)	13733.0	NM_134255	68801.0	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	4.40543333627246	4.99651541104716	5.14784054397816	4.95136202244942	5.20434483214552	5.55684065419225	4.23262320756154	5.31780712661971	0.312788244928529	0.385376177358687	0.876154616828737
Merged-chr8-125771365-4	chr8	125771275	125771475	+	909.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175561, intron 27 of 33)	intron (NM_175561, intron 27 of 33)	37172.0	NM_001310688	66566.0	Mm.25296	NM_025636	ENSMUSG00000031851	Ntpcr	2310079N02Rik|AI449709	nucleoside-triphosphatase, cancer-related	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-72084735-1	chr12	72084635	72084835	+	772.0	f0_balb.idr	exon (NM_026038, exon 1 of 5)	exon (NM_026038, exon 1 of 5)	578.0	NM_026038	67217.0	Mm.286120	NM_026038	ENSMUSG00000019718	L3hypdh	2810055F11Rik	L-3-hydroxyproline dehydratase (trans-)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101252775-4	chr15	101252690	101252890	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-14056.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	6.47260752206328	6.51182887050445	6.22467796724529	6.80012298066522	6.11712519075959	6.06620802317187	4.64739521242436	5.72711239599184	-0.8369379747118	0.00295791768446694	0.0449988542412101
Merged-chr3-27218817-4	chr3	27218712	27218912	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 1 of 4)	intron (NM_178772, intron 1 of 4)	35808.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167745561-2	chr2	167745461	167745661	+	631.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54384.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3905796-2	chr12	3905696	3905896	+	737.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153743, intron 16 of 17)	intron (NM_153743, intron 16 of 17)	14052.0	NM_153743	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-42463489-4	chr15	42463392	42463592	+	760.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286062, intron 6 of 8)	intron (NM_001286062, intron 6 of 8)	213485.0	NM_001286062	11600.0	Mm.309336	NM_009640	ENSMUSG00000022309	Angpt1	1110046O21Rik|Ang-1|Ang1	angiopoietin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125482491-2	chr6	125482391	125482591	+	913.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_007657, intron 1 of 7)	intron (NM_007657, intron 1 of 7)	12269.0	NM_007657	12527.0	Mm.210676	NM_007657	ENSMUSG00000030342	Cd9	Tspan29	CD9 antigen	protein-coding	2.29496821490044	1.97602942951821	2.77061026014209	2.69517328680285	2.2059303305085	2.16919742653862	2.38252529976269	2.62222975455186	-0.267895698833464	0.73905940905982	0.998431161219273
Merged-chr7-28294692-3	chr7	28294589	28294789	+	639.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007866, exon 7 of 9)	exon (NM_007866, exon 7 of 9)	-3503.0	NM_175033	280621.0	Mm.212777	NM_175033	ENSMUSG00000046750	Selenov	Selv	selenoprotein V	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-107836393-3	chr13	107836288	107836488	+	932.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 2 of 14)	intron (NM_145456, intron 2 of 14)	53676.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	0.579583617182741	0.617743797523703	0.605473631566562	1.09756177800895	1.25543159005846	0.851408810889771	1.75958428542774	1.10463452909931	2.63177860881834	0.0944385339777154	0.475550312581511
Merged-chr19-17255734-4	chr19	17255628	17255828	+	916.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	83777.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	2.89564589473375	3.37906222178019	2.62523281326609	3.34941157618201	3.55782781392989	3.05138969791921	3.7117207519825	4.69134161958954	1.22402304560155	0.040782775458766	0.288423617037034
Merged-chr8-107572738-3	chr8	107572633	107572833	+	783.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	15749.0	NM_010817	17463.0	Mm.18347	NM_010817	ENSMUSG00000039067	Psmd7	AW107203|Mov-34|Mov34	proteasome (prosome, macropain) 26S subunit, non-ATPase, 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-105282881-1	chr9	105282781	105282981	+	607.0	f0_balb.idr	intron (NM_172461, intron 12 of 15)	intron (NM_172461, intron 12 of 15)	112406.0	NM_172461	208583.0	Mm.347509	NM_172461	ENSMUSG00000035032	Nek11	4932416N14Rik	NIMA (never in mitosis gene a)-related expressed kinase 11	protein-coding	-0.0572118195716904	-0.220077675995857	-0.411009536176994	0.194970480842028	-0.418003781277402	-0.406382611305921	-0.410178121312781	-0.413406436994428	-3.48788111323779	0.161866796274106	1
Merged-chr1-88304738-2	chr1	88304638	88304838	+	638.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1974.0	NM_134252	171382.0	Mm.218753	NM_134252	ENSMUSG00000036251	Trpm8	CMR1|LTRPC6|LTrpC-6|TRPP8|Trp-p8	transient receptor potential cation channel, subfamily M, member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-97348654-4	chr15	97348578	97348778	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172293, intron 3 of 5)	intron (NM_172293, intron 3 of 5)	-101391.0	NM_001164602	105827.0	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-145963744-3	chr3	145963662	145963862	+	744.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24108.0	NM_001166064	214804.0	Mm.268854	NM_001166064	ENSMUSG00000036863	Syde2	C430017H16Rik	synapse defective 1, Rho GTPase, homolog 2 (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-95146768-4	chr10	95146668	95146868	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_131146)	promoter-TSS (NR_131146)	-943.0	NR_131146	628062.0		NR_131146	ENSMUSG00000112481	Gm29684	-	predicted gene, 29684	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-68884610-3	chr9	68884518	68884718	+	781.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013646, intron 1 of 10)	intron (NM_013646, intron 1 of 10)	119272.0	NR_033299	320440.0	Mm.483129	NM_177159		9530091C08Rik	-	RIKEN cDNA 9530091C08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-60639506-2	chr10	60639406	60639606	+	781.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252635, intron 4 of 68)	intron (NM_001252635, intron 4 of 68)	56984.0	NM_001252635	22295.0	Mm.440327	NM_023370	ENSMUSG00000012819	Cdh23	4930542A03Rik|USH1D|ahl|ahl1|bob|bus|mdfw|nmf112|nmf181|nmf252|sals|v	cadherin 23 (otocadherin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-87811693-2	chr11	87811593	87811793	+	554.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_080420, intron 9 of 12)	intron (NM_080420, intron 9 of 12)	14421.0	NM_080420	76113.0	Mm.41236	NM_080420	ENSMUSG00000009356	Lpo	5830499B15Rik	lactoperoxidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70374738-4	chr8	70374626	70374826	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016685, intron 3 of 18)	CpG	1178.0	NM_016685	12845.0	Mm.45071	NM_016685	ENSMUSG00000031849	Comp	TSP5	cartilage oligomeric matrix protein	protein-coding	-2.18375600819439	-2.15556918946382	-2.16409311609999	-2.17109492323169	-2.18177734563694	-2.01960173909294	-2.16216348594872	-2.16984160310277	0.759018020146679	0.829933115115583	1
Merged-chr1-87653279-1	chr1	87653179	87653379	+	542.0	f0_balb.idr	intron (NM_001110192, intron 2 of 26)	intron (NM_001110192, intron 2 of 26)	32967.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-24999926-1	chr19	24999826	25000026	+	720.0	f1_balb.idr	intron (NM_028785, intron 1 of 47)	CpG	397.0	NM_028785	76088.0	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	1.31263367900526	0.544534090343397	0.73448313111117	0.525918651655007	1.05861846166208	0.767616929066716	0.536395475585419	1.50118687617822	0.857062594732584	0.598522697479825	0.972303230574462
Merged-chr2-44979976-2	chr2	44979876	44980076	+	712.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43201.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101177178-2	chr11	101177078	101177278	+	822.599976	f1_balb.idr|f1_c57bl6.idr	intron (NM_016782, intron 1 of 23)	intron (NM_016782, intron 1 of 23)	1061.0	NM_016782	53321.0	Mm.474527	NM_016782	ENSMUSG00000017167	Cntnap1	AI841080|Caspr|NCP1|Nrxn4|p190|shm	contactin associated protein-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59815695-2	chr15	59815595	59815795	+	608.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20736.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-60278714-4	chr10	60278669	60278869	+	913.1785890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011179, intron 1 of 14)	intron (NM_011179, intron 1 of 14)	1141.0	NM_001146121	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-44116228-2	chr19	44116128	44116328	+	633.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081077, intron 10 of 13)	intron (NM_001081077, intron 10 of 13)	-8751.0	NM_001162410	12675.0	Mm.3996	NM_007700	ENSMUSG00000025199	Chuk	AI256658|Chuk1|Fbx24|Fbxo24|IKBKA|IKK alpha|IKK1|Ikka|NFKBIKA	conserved helix-loop-helix ubiquitous kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-106548391-4	chr3	106548304	106548504	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133869)	promoter-TSS (NM_133869)	-602.0	NM_133869	99712.0	Mm.429443	NM_133869	ENSMUSG00000040774	Cept1	9930118K05Rik|mCEPT1	choline/ethanolaminephosphotransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-119422823-4	chr4	119422728	119422928	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355214)	promoter-TSS (NM_001355214)	144.0	NM_001014900	332934.0	Mm.388911	NM_001014900	ENSMUSG00000070806	Zmynd12	AI414736	zinc finger, MYND domain containing 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-132338159-4	chr1	132338052	132338252	+	651.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22027.0	NM_028778	74137.0	Mm.100666	NM_028778	ENSMUSG00000009772	Nuak2	1200013B22Rik|Omphk2|Snark|mKIAA0537	NUAK family, SNF1-like kinase, 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27288583-2	chr2	27288483	27288683	+	612.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_133905, intron 12 of 29)	intron (NR_133905, intron 12 of 29)	-41280.0	NM_138665	192166.0	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-60735360-2	chr13	60735227	60735427	+	783.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 17 of 26)	intron (NM_134062, intron 17 of 26)	51037.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-151009038-2	chr3	151008938	151009138	+	623.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus1|LINE|L1	14824.0	NR_039540	100628568.0		NR_039540	ENSMUSG00000092830	Mir3963	mmu-mir-3963|mu-mir-3963	microRNA 3963	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-142967369-2	chr2	142967269	142967469	+	547.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	64404.0	NR_131921	75053.0	Mm.72638	NR_131921	ENSMUSG00000086504	Kif16bos	4930511F01Rik	kinesin family member 16B, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132951253-4	chr4	132951190	132951390	+	828.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22805.0	NM_010208	14191.0	Mm.271665	NM_010208	ENSMUSG00000028874	Fgr	-	FGR proto-oncogene, Src family tyrosine kinase	protein-coding	0.461414144073096	0.8243220897669	0.0971300532896969	0.0926116461703008	0.359295394693864	0.465262918040153	0.09842113593723	0.0934012474871014	-1.02857028283532	0.613910954576842	1
Merged-chr17-5559892-2	chr17	5559792	5559992	+	711.099976	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	67292.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-32521561-4	chr9	32521453	32521653	+	997.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008026, intron 1 of 8)	L2b|LINE|L2	19899.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71728656-2	chr8	71728598	71728798	+	582.583374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3017.0	NM_028715	74015.0	Mm.22025	NM_028715	ENSMUSG00000070000	Fcho1	3322402E17Rik|N28152	FCH domain only 1	protein-coding	1.28746601100946	0.904564883732646	1.51824854227348	1.47296063160644	1.50482958582928	0.907500076662507	1.64228133730284	1.36216423901451	0.257188374748979	0.842512750966021	0.998431161219273
Merged-chr5-143547602-4	chr5	143547511	143547711	+	881.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1095.0	NM_133703	67238.0	Mm.383219	NM_026050	ENSMUSG00000083012	Fam220a	1500026F15Rik|2810453I06Rik|AW047776|Acpin1|Sipar	family with sequence similarity 220, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-111777418-2	chr13	111777277	111777477	+	833.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011945, intron 1 of 19)	intron (NM_011945, intron 1 of 19)	31616.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	2.65732883185437	1.82894707770459	2.55036829450843	1.09343494124547	1.47312608910284	2.38419593693749	1.77818060935318	1.0975931768635	-0.993090776265291	0.375382745770141	0.868350035427406
Merged-chr2-29736191-2	chr2	29736091	29736291	+	718.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_054050, intron 21 of 23)	intron (NM_054050, intron 21 of 23)	-25337.0	NM_001177392	433416.0	Mm.330112	NM_001034887	ENSMUSG00000075425	Gm13547	-	predicted gene 13547	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97284654-1	chr6	97284554	97284754	+	632.0	f1_c57bl6.idr	Intergenic	Intergenic	-31874.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	1.67196096203215	0.562603553020373	0.924809878548526	0.893349286922673	0.847739775638612	0.565069491269882	1.20784408017098	0.544459652963627	-1.19714182966912	0.450033850350967	0.916404393066723
Merged-chr13-12257224-4	chr13	12257132	12257332	+	917.037476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081128, intron 1 of 32)	intron (NM_001081128, intron 1 of 32)	881.0	NM_001081128	238505.0	Mm.40335	NM_001081128	ENSMUSG00000021311	Mtr	AI894170|D830038K18Rik|MS	5-methyltetrahydrofolate-homocysteine methyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-144290957-2	chr2	144290857	144291057	+	700.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur2|SINE|Alu	20053.0	NM_001355688	74528.0	Mm.386817	NM_028984	ENSMUSG00000027424	Mgme1	8430406I07Rik|AI426476	mitochondrial genome maintenance exonuclease 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118680176-2	chr9	118680051	118680251	+	860.1142580000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 11 of 27)	intron (NM_133721, intron 11 of 27)	-31541.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	3.04250535612106	3.61760461379762	3.80017407619186	3.47912464659686	3.06929043769298	4.2572423688582	4.22917944483306	2.89574902063721	0.364545516607646	0.526454297983261	0.94877971795044
Merged-chr4-59871102-4	chr4	59871069	59871269	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172468, intron 3 of 8)	intron (NM_172468, intron 3 of 8)	43887.0	NM_021053	30936.0	Mm.284433	NM_021053	ENSMUSG00000028386	Slc46a2	5430429N04Rik|Ly110|TSO-1C12|Tscot	solute carrier family 46, member 2	protein-coding	1.6103403619721	2.84285536116374	3.34550632017162	3.31708886976116	2.54160382293323	3.07700028530304	1.48432563331496	3.05131649241246	-0.473607250167536	0.577887115956393	0.96585843058813
Merged-chr1-135131852-2	chr1	135131752	135131952	+	644.6999509999999	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177081)	promoter-TSS (NM_177081)	723.0	NR_153383	13924.0	Mm.4450	NM_007955		Ptprv	Esp|OST|OST-PTP	protein tyrosine phosphatase, receptor type, V	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-24817663-4	chr7	24817554	24817754	+	705.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1141.0	NR_045096	545936.0	Mm.376228	NR_045096	ENSMUSG00000011350	Gm5893	EG545936|Gm477	predicted gene 5893	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-38005594-2	chr19	38005494	38005694	+	544.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001302140, intron 3 of 53)	MER31A|LTR|ERV1	37983.0	NM_001099634	226101.0	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-136202007-2	chr5	136201907	136202107	+	995.099976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3053.0	NM_025774	66801.0	Mm.425295	NM_025774	ENSMUSG00000039737	Prkrip1	8430424D23Rik|C114	Prkr interacting protein 1 (IL11 inducible)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-137860210-2	chr4	137859998	137860198	+	880.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2139.0	NM_199307	230857.0	Mm.401062	NM_199307	ENSMUSG00000057530	Ece1	AW322500|ECE-1|ECE-1a|ECE-1b|ECE-1d	endothelin converting enzyme 1	protein-coding	0.904445700294468	0.617948791159866	1.27359754438842	0.595453420313036	0.913005113778065	1.76724925887783	0.608142892220528	1.23537260549115	1.38207716826411	0.366678401124592	0.861862339647405
Merged-chr5-18217033-2	chr5	18216933	18217133	+	647.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR15|LTR|ERVK	143380.0	NM_010305	14677.0	Mm.254629	NM_010305	ENSMUSG00000057614	Gnai1	AU046200|Gialpha1|Gnai-1	guanine nucleotide binding protein (G protein), alpha inhibiting 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-50252245-1	chr11	50252145	50252345	+	541.0	f1_balb.idr	Intergenic	RLTR23|LTR|ERV1	-13713.0	NR_132733	17001.0	Mm.245151	NM_008521	ENSMUSG00000020377	Ltc4s	-	leukotriene C4 synthase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-102903046-4	chr14	102902942	102903142	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	79590.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-25396078-3	chr2	25395877	25396077	+	716.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009849, exon 1 of 9)	exon (NM_009849, exon 1 of 9)	103.0	NM_009849	12496.0	Mm.482100	NM_009849	ENSMUSG00000015085	Entpd2	Cd39l1|NTPDase2	ectonucleoside triphosphate diphosphohydrolase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-105267081-3	chr4	105266886	105267086	+	817.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A1|LTR|ERVL-MaLR	109639.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-63407733-2	chr14	63407633	63407833	+	674.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007549, intron 1 of 12)	intron (NM_007549, intron 1 of 12)	9454.0	NM_007549	12143.0	Mm.3962	NM_007549	ENSMUSG00000014453	Blk	-	B lymphoid kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-45438234-2	chr13	45438144	45438344	+	589.875	f0_balb.idr|f1_balb.idr	Intergenic	B1F|SINE|Alu	48502.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-119613225-6	chr13	119613093	119613293	+	868.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10626.0	NM_020279	56838.0	Mm.143745	NM_020279	ENSMUSG00000074715	Ccl28	CCK1|MEC|Scya28	chemokine (C-C motif) ligand 28	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34308300-4	chr17	34308247	34308447	+	968.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010382, intron 1 of 5)	intron (NM_010382, intron 1 of 5)	2480.0	NM_010382	14969.0	Mm.22564	NM_010382	ENSMUSG00000060586	H2-Eb1	Eb|H-2Eb|H2Eb|Ia-4|Ia4	histocompatibility 2, class II antigen E beta	protein-coding	5.29948350625711	5.34857757099242	4.85176658394548	3.85787649701085	5.75135435595855	5.38252118230359	5.49902554808558	4.29455956719105	0.444587576355344	0.266263145034013	0.769151254995423
Merged-chr11-95854000-2	chr11	95853943	95854143	+	839.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4774.0	NR_045187	73906.0	Mm.399894	NR_045187	ENSMUSG00000086015	4833417C18Rik	-	RIKEN cDNA 4833417C18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-12532643-2	chr11	12532543	12532743	+	815.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-67683.0	NM_001282993	12808.0	Mm.22847	NM_172496	ENSMUSG00000020173	Cobl	-	cordon-bleu WH2 repeat	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-42376372-4	chr6	42376294	42376494	+	999.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045169, intron 2 of 3)	intron (NR_045169, intron 2 of 3)	-3126.0	NM_023580	13835.0	Mm.133330	NM_023580	ENSMUSG00000029859	Epha1	5730453L17Rik|AL033318|Eph|Esk	Eph receptor A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-32437200-2	chr18	32437100	32437300	+	923.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-58916.0	NR_045403	402767.0	Mm.385109	NR_045403	ENSMUSG00000097413	A830052D11Rik	-	RIKEN cDNA A830052D11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-143732478-4	chr5	143732362	143732562	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029749)	promoter-TSS (NM_029749)	-182.0	NM_029749	76800.0	Mm.259620	NM_029749	ENSMUSG00000051306	Usp42	2410140K03Rik|3110031A07Rik|A630018G05Rik|D5Ertd591e	ubiquitin specific peptidase 42	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-75727807-4	chr15	75727707	75727907	+	878.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20115.0	NM_194350	378435.0	Mm.309589	NM_194350	ENSMUSG00000047591	Mafa	RIPE3b1	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein A (avian)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-78177096-2	chr11	78176996	78177196	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080849)	promoter-TSS (NM_080849)	-430.0	NM_080849	140859.0	Mm.23788	NM_080849	ENSMUSG00000017405	Nek8	4632401F23Rik|b2b1449Clo|jck	NIMA (never in mitosis gene a)-related expressed kinase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-108761423-4	chr12	108761314	108761514	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31897.0	NM_009537	22632.0	Mm.3868	NM_009537	ENSMUSG00000021264	Yy1	AW488674|NF-E1	YY1 transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-76538095-3	chr16	76538048	76538248	+	928.194458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10647.0	NR_155449	102632730.0		NR_155449		Gm30726	-	predicted gene, 30726	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-41574895-2	chr3	41574795	41574995	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001130186, intron 1 of 10)	intron (NM_001130186, intron 1 of 10)	10015.0	NM_001130186	269424.0	Mm.286285	NM_172303	ENSMUSG00000025764	Jade1	AU041499|D530048A03Rik|Phf17|mKIAA1807	jade family PHD finger 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45561424-4	chr7	45561333	45561533	+	914.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025330, intron 5 of 8)	B3|SINE|B2	6505.0	NM_025330	66065.0	Mm.285710	NM_025330	ENSMUSG00000030825	Hsd17b14	0610039E24Rik|Dhrs10|retSDR3	hydroxysteroid (17-beta) dehydrogenase 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-103841128-3	chr3	103841024	103841224	+	744.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142960, intron 3 of 3)	RLTR45|LTR|ERVK	8428.0	NM_001142960	229672.0	Mm.297245	NM_001142959	ENSMUSG00000044165	Bcl2l15	Bfk|Gm566	BCLl2-like 15	protein-coding	2.13155433364869	1.85552467372709	3.20990576941496	2.62492069154696	1.00615421895469	1.12217099627623	2.24196981842467	1.05478743573943	-2.64671724454829	0.0180060199152324	0.166270655686638
Merged-chr13-107798321-2	chr13	107798221	107798421	+	906.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 2 of 14)	intron (NM_145456, intron 2 of 14)	91743.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-3192077-2	chr6	3191977	3192177	+	911.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-96442.0	NR_036696	667335.0	Mm.380219	NR_036696	ENSMUSG00000106779	Gm8579	EG667335	spermatogenesis associated glutamate (E)-rich protein 4a pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-77848112-2	chr16	77848012	77848212	+	606.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	201839.0	NR_029540	723952.0		NR_029540	ENSMUSG00000065472	Mir125b-2	Mirn125b-2|mir-125b-2	microRNA 125b-2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-135795276-2	chr1	135795176	135795376	+	692.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4145.0	NM_021467	21952.0	Mm.44379	NM_021467	ENSMUSG00000026418	Tnni1	2700018B22Rik|AI747285|ssTnI	troponin I, skeletal, slow 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117745331-2	chr10	117745231	117745431	+	669.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029875, intron 1 of 4)	intron (NM_029875, intron 1 of 4)	1027.0	NM_029875	215436.0	Mm.256753	NM_029875	ENSMUSG00000060181	Slc35e3	9330166G04Rik|AI481200	solute carrier family 35, member E3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43031428-4	chr4	43031319	43031519	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023231)	promoter-TSS (NM_023231)	-35.0	NM_023231	66592.0	Mm.331565	NM_023231	ENSMUSG00000028455	Stoml2	0610038F01Rik|MSLP2|SLP-2	stomatin (Epb7.2)-like 2	protein-coding	3.97895814936801	4.32347331196806	3.20241610016622	4.33025071229205	3.90354296191815	2.91180770138756	4.27354072796381	4.9055917221692	0.211230909005653	0.690913447987243	0.996768576110068
Merged-chr5-34334535-4	chr5	34334433	34334633	+	994.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1717.0	NM_011278	19822.0	Mm.21281	NM_011278	ENSMUSG00000029110	Rnf4	AU018689|Gtrgeo8|SNURF	ring finger protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46507344-2	chr19	46507244	46507444	+	681.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_053100, intron 1 of 5)	intron (NM_053100, intron 1 of 5)	5696.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25855288-2	chr7	25855188	25855388	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38758.0	NM_028775	74134.0	Mm.275188	NM_028775	ENSMUSG00000040703	Cyp2s1	1200011C15Rik|AU041727|C79779	cytochrome P450, family 2, subfamily s, polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-78809017-4	chr18	78808922	78809122	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053099, intron 4 of 5)	intron (NM_053099, intron 4 of 5)	-212072.0	NM_207651	27411.0	Mm.44158	NM_030683	ENSMUSG00000024552	Slc14a2	UT-A1|UT-A3	solute carrier family 14 (urea transporter), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-170305183-3	chr1	170305077	170305277	+	890.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198955, intron 1 of 2)	intron (NM_001198955, intron 1 of 2)	1155.0	NM_001198955	665574.0	Mm.65316	NM_001198955	ENSMUSG00000102752	Gm7694	EG665574	predicted gene 7694	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85570028-4	chr12	85569960	85570160	+	885.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29045.0	NM_001205052	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120579090-2	chr11	120578990	120579190	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_133796, exon 6 of 6)	3' UTR (NM_133796, exon 6 of 6)	2530.0	NM_133796	192662.0	Mm.30016	NM_133796	ENSMUSG00000025132	Arhgdia	5330430M07Rik|Gdi-1|Rho-GDI|RhoDGI|RhoGDI-1	Rho GDP dissociation inhibitor (GDI) alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-25252504-4	chr9	25252401	25252601	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001205367)	promoter-TSS (NM_001205367)	62.0	NM_001205367	235072.0	Mm.270259	NM_009859	ENSMUSG00000001833	Sept7	Cdc10|E430034N22	septin 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-27709693-2	chr3	27709593	27709793	+	867.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356953, intron 1 of 26)	intron (NM_001356953, intron 1 of 26)	759.0	NM_001356953	72007.0	Mm.38832	NM_173182	ENSMUSG00000039286	Fndc3b	1600019O04Rik|AW550168|Fad104|mKIAA4164	fibronectin type III domain containing 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-42515553-4	chr19	42515459	42515659	+	898.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3246.0	NM_177464	52013.0	Mm.254169	NM_177464	ENSMUSG00000025184	R3hcc1l	1700036B12Rik|AI450607|C10orf28|D19Ertd386e|GIDRP86|Gidrp88	R3H domain and coiled-coil containing 1 like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-76054499-3	chr16	76054364	76054564	+	584.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53680.0	NR_155447	102632240.0	Mm.417237	NR_155447	ENSMUSG00000087214	Gm15555	-	predicted gene 15555	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-38993038-4	chr18	38992942	38993142	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175164)	promoter-TSS (NM_175164)	-103.0	NM_001361073	71302.0	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-52185111-4	chr16	52185018	52185218	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033238, intron 14 of 17)	intron (NM_001033238, intron 14 of 17)	153569.0	NM_001033238	208650.0	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-172528874-4	chr1	172528770	172528970	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027972, intron 2 of 11)	intron (NM_027972, intron 2 of 11)	7740.0	NM_027972	71870.0	Mm.78373	NM_027972	ENSMUSG00000026546	Cfap45	1700028D05Rik|Ccdc19|Nesg1	cilia and flagella associated protein 45	protein-coding	2.68051784542014	2.14508516433279	2.56160013754191	3.08364509387622	3.02584273699887	2.80186960201895	2.43912588826956	3.54189639177717	0.663015935055464	0.353747681637149	0.853132398390271
Merged-chr17-35301983-7	chr17	35301869	35302069	+	929.585693	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18578.0	NM_010390	15006.0	Mm.466882	NM_010390	ENSMUSG00000079507	H2-Q1	H-2Q1|Q1|Q1b|Q1d|Q1k|Qa-1|Qa1|Qed-1	histocompatibility 2, Q region locus 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-86024619-3	chr12	86024505	86024705	+	763.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081423, intron 33 of 33)	intron (NM_001081423, intron 33 of 33)	54436.0	NM_009368	21809.0	Mm.3992	NM_009368	ENSMUSG00000021253	Tgfb3	TGF-beta-3|Tgfb-3	transforming growth factor, beta 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-108569628-4	chr6	108569530	108569730	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53537.0	NR_040757	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-60604687-2	chr13	60604587	60604787	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	ORR1A2|LTR|ERVL-MaLR	2476.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	-1.56355737717652	-1.81244775989375	-1.82128546162293	-1.82854501295842	-1.83962066705452	-1.81053259306168	-1.81928479966835	-1.82724555674025	-1.28500227969968	0.715751224811686	1
Merged-chr1-61181288-3	chr1	61181190	61181390	+	807.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-197142.0	NR_040483	77341.0	Mm.402964	NR_040483	ENSMUSG00000085447	9530026F06Rik	-	RIKEN cDNA 9530026F06 gene	ncRNA	1.02342434605854	0.184848627066097	0.5089593179187	0.340592011757131	0.166584086478225	0.18628250129987	0.51660262677563	0.343668530355412	-1.7328852565701	0.361089764456965	1
Merged-chr6-11926247-4	chr6	11926122	11926322	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_029404, exon 1 of 17)	5' UTR (NM_029404, exon 1 of 17)	341.0	NM_001168382	75725.0	Mm.212411	NM_029404	ENSMUSG00000029629	Phf14	1110001C23Rik|4932409F11Rik|5730446A07Rik|AA623952|AV297001|mKIAA0783	PHD finger protein 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-20297945-2	chr13	20297832	20298032	+	638.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 13 of 21)	intron (NM_080288, intron 13 of 21)	-175058.0	NM_198093	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	1.59212408063246	0.691499869907241	2.16780184797629	1.70372288442856	1.02120641181046	0.695461689492509	0.677583665491396	0.661864303094374	-3.69719294906717	0.0200288427973613	0.179707022750148
Merged-chr8-36251671-4	chr8	36251591	36251791	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2175.0	NM_001081150	244421.0	Mm.324032	NM_001081150	ENSMUSG00000039633	Lonrf1	-	LON peptidase N-terminal domain and ring finger 1	protein-coding	4.31056362810173	4.54529226275055	3.95756898476523	3.98516450088604	4.4693544513894	5.21121667873487	3.54522726841279	5.16949056757211	0.6680407437112	0.135347778566021	0.574789826014803
Merged-chr14-30700399-1	chr14	30700299	30700499	+	580.0	f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-14450.0	NM_019460	54650.0	Mm.294662	NM_019460	ENSMUSG00000006527	Sfmbt1	4930442N21Rik|9330180L21Rik|AA536974|Sfmbt|Smr	Scm-like with four mbt domains 1	protein-coding	0.90897837285531	1.17886973702834	0.529022890252203	1.18382079157969	0.801784042949599	1.06367417601945	0.531001943567475	0.52329192870916	-1.18888037738195	0.465611380197305	1
Merged-chr11-33932842-6	chr11	33932688	33932888	+	849.8250119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001190886, intron 1 of 7)	Tigger7|DNA|TcMar-Tigger	-30225.0	NM_031169	16533.0	Mm.6206	NM_031169	ENSMUSG00000020155	Kcnmb1	BKbeta1	potassium large conductance calcium-activated channel, subfamily M, beta member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-128392492-4	chr7	128392379	128392579	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026418, intron 3 of 4)	intron (NM_026418, intron 3 of 4)	25693.0	NM_026418	67865.0	Mm.18635	NM_026418	ENSMUSG00000030844	Rgs10	2310010N19Rik	regulator of G-protein signalling 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52188810-4	chr13	52188700	52188900	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	92059.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96057916-4	chr3	96057830	96058030	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_013841, exon 1 of 15)	5' UTR (NM_013841, exon 1 of 15)	525.0	NM_013841	22365.0	Mm.263185	NM_013841	ENSMUSG00000015747	Vps45	AI462172|AW554165|mVps45	vacuolar protein sorting 45	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-57759501-3	chr9	57759385	57759585	+	916.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007713, intron 3 of 12)	intron (NM_007713, intron 3 of 12)	6375.0	NM_007713	102414.0	Mm.25720	NM_007713	ENSMUSG00000032316	Clk3	AI256811	CDC-like kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117370569-5	chr8	117370471	117370671	+	842.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028941, intron 1 of 20)	intron (NM_028941, intron 1 of 20)	21401.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44508969-2	chr9	44508869	44509069	+	559.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_030256, exon 9 of 9)	exon (NM_030256, exon 9 of 9)	9833.0	NM_030256	80288.0	Mm.370270	NM_030256	ENSMUSG00000063382	Bcl9l	B9L|BC003321|BCL9-2|DLNB11	B cell CLL/lymphoma 9-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-8802376-4	chr19	8802279	8802479	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001098237)	promoter-TSS (NM_001098237)	-117.0	NM_133759	75291.0	Mm.23423	NM_133759	ENSMUSG00000071661	Zbtb3	4930563M09Rik	zinc finger and BTB domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-110601387-4	chr12	110601274	110601474	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030238)	promoter-TSS (NM_030238)	-21.0	NM_030238	13424.0	Mm.181430	NM_030238	ENSMUSG00000018707	Dync1h1	9930018I23Rik|AI894280|DHC1|DHC1a|DNCL|Dnchc1|Dnec1|Dnecl|Loa|MAP1C|P22|Swl|mKIAA0325	dynein cytoplasmic 1 heavy chain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5755685-2	chr19	5755585	5755785	+	877.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008520, intron 20 of 27)	intron (NM_008520, intron 20 of 27)	14781.0	NM_008520	16998.0	Mm.182396	NM_008520	ENSMUSG00000024940	Ltbp3	Ltbp2|mFLJ00070	latent transforming growth factor beta binding protein 3	protein-coding	-0.778082596538266	-1.01822870734921	-1.02945680142399	-1.03348344941628	-0.568232152040811	-1.01579553252409	-1.02691500703827	-1.0331489920742	0.87297571659195	0.788523652777195	1
Merged-chr9-90112571-4	chr9	90112486	90112686	+	766.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039147, intron 1 of 12)	intron (NM_001039147, intron 1 of 12)	2234.0	NM_001039147	21761.0	Mm.426209	NM_024431	ENSMUSG00000062270	Morf4l1	MORFRG15|MRG15|TEG-189|Tex189|mKIAA4002	mortality factor 4 like 1	protein-coding	1.78561679741007	1.29789633908914	1.72257788162929	1.88573667335167	1.01673684363748	1.49625984766516	1.95942390906871	1.55585060254446	-0.454115050904732	0.692943764930507	0.99740158133691
Merged-chr15-8444109-1	chr15	8444009	8444209	+	1000.0	f0_balb.idr	intron (NM_201232, intron 1 of 45)	CpG	354.0	NM_027707	71175.0	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	NIPBL cohesin loading factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-42837312-4	chr17	42837219	42837419	+	874.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009847, intron 4 of 17)	intron (NM_009847, intron 4 of 17)	39105.0	NM_009847	12488.0	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-11687812-4	chr11	11687718	11687918	+	723.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025597, intron 1 of 7)	intron (NM_001025597, intron 1 of 7)	1893.0	NM_001025597	22778.0	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-103389916-4	chr11	103389838	103390038	+	973.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183034, intron 4 of 11)	L1M2|LINE|L1	22726.0	NM_183034	353047.0	Mm.18556	NM_183034	ENSMUSG00000034247	Plekhm1	AP162|B2|BC038943|D330036J23Rik	pleckstrin homology domain containing, family M (with RUN domain) member 1	protein-coding	2.18843315200483	2.46481145827656	3.31489229005075	2.81794797442091	1.93099359392938	2.48349546578851	1.41780927311553	2.74742109987255	-1.06974866469517	0.213430479335358	0.703038353542171
Merged-chr1-87174461-3	chr1	87174364	87174564	+	858.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8850.0	NM_027084	69453.0	Mm.84618	NM_027084	ENSMUSG00000036480	Prss56	1700027L20Rik	protease, serine 56	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-99006784-4	chr13	99006707	99006907	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22242.0	NM_027064	69382.0	Mm.45466	NM_027064	ENSMUSG00000045022	1700024P04Rik	H2bl1|Subh2bv	RIKEN cDNA 1700024P04 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150869943-1	chr4	150869843	150870043	+	668.0	f0_balb.idr	Intergenic	L2|LINE|L2	14873.0	NM_133753	74155.0	Mm.318841	NM_133753	ENSMUSG00000028967	Errfi1	1300002F13Rik|AI788755|Mig-6|Mig6|RALT	ERBB receptor feedback inhibitor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53028543-3	chr4	53028443	53028643	+	792.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16663.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24454802-4	chr17	24454721	24454921	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_125990, intron 1 of 13)	CpG	571.0	NM_001301784	13560.0	Mm.163132	NM_007893	ENSMUSG00000024137	E4f1	p120E4F|phi-AP3	E4F transcription factor 1	protein-coding	6.2008708523995	6.74712100231572	6.08570627916705	5.66537109557137	6.22649362271953	6.59114691377893	5.6872322429071	6.34866351330068	0.0276424630768568	0.917250744977534	0.998431161219273
Merged-chr17-80728632-4	chr17	80728507	80728707	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290345)	promoter-TSS (NM_001290345)	-582.0	NM_001290345	225028.0	Mm.311948	NM_001081357	ENSMUSG00000024242	Map4k3	4833416M01Rik|4833416M07Rik|9530052P13Rik|Glk|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1	mitogen-activated protein kinase kinase kinase kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-139919986-4	chr2	139919871	139920071	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110352, intron 9 of 12)	intron (NR_110352, intron 9 of 12)	146834.0	NM_001159640	75812.0	Mm.293449	NM_175225	ENSMUSG00000039033	Tasp1	4930485D02Rik|AW986064	taspase, threonine aspartase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-53451108-3	chr19	53451177	53451377	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028427, intron 4 of 9)	intron (NR_028427, intron 4 of 9)	13519.0	NR_028427	381232.0	Mm.248624	NR_028427	ENSMUSG00000097636	Mirt1	4833407H14Rik|5430437C04Rik|5830416P10Rik|Gm10758	myocardial infarction associated transcript 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-4570864-3	chr2	4570769	4570969	+	830.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177844, intron 2 of 11)	intron (NM_001177844, intron 2 of 11)	11115.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-116314824-4	chr8	116314704	116314904	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-190211.0	NM_029297	75465.0	Mm.23114	NM_029297	ENSMUSG00000034467	Dynlrb2	1700009A04Rik|DNLC2B|Dncl2b	dynein light chain roadblock-type 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84191061-1	chr8	84190961	84191161	+	601.0	f1_balb.idr	Intergenic	Intergenic	-12100.0	NR_029821	723819.0		NR_029821	ENSMUSG00000065483	Mir181c	Mirn181c|mir-181c	microRNA 181c	ncRNA	2.60914638870631	2.42838648121816	2.18323131316614	2.75176197464389	2.53348899768176	2.44661923136221	2.36376703124346	3.74963549705062	0.802624679562263	0.296271362417815	0.799088430255377
Merged-chr1-53785204-4	chr1	53785116	53785316	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133810)	promoter-TSS (NM_133810)	-1.0	NM_133810	98267.0	Mm.25559	NM_133810	ENSMUSG00000026094	Stk17b	3110009A03Rik|AI120141|Drak2	serine/threonine kinase 17b (apoptosis-inducing)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-60730592-2	chr13	60730492	60730692	+	733.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 16 of 26)	intron (NM_134062, intron 16 of 26)	55772.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	-0.990219700220919	-1.06815903705124	-1.24279257567618	-1.25136460524387	-1.2591314987605	-1.06589762089026	-1.24043020744747	-1.24983021604965	-1.18324435021495	0.700911767692951	1
Merged-chr6-122653281-4	chr6	122653171	122653371	+	963.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26847.0	NM_139218	73708.0	Mm.27982	NM_139218	ENSMUSG00000046323	Dppa3	2410075G02Rik|PCG7|PGC7|Stella	developmental pluripotency-associated 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47371612-2	chr17	47371512	47371712	+	864.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183086, intron 1 of 6)	intron (NM_183086, intron 1 of 6)	2415.0	NM_183086	64657.0	Mm.216250	NM_183086	ENSMUSG00000034729	Mrps10	1110038B19Rik|AW743084|Rpms10	mitochondrial ribosomal protein S10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80604228-1	chr10	80604128	80604328	+	631.0	f0_balb.idr	intron (NM_019575, intron 1 of 6)	intron (NM_019575, intron 1 of 6)	1346.0	NM_019575	56214.0	Mm.273170	NM_019575	ENSMUSG00000113949	Scamp4	2410022D05Rik|AI448940|AU022392|AW742369|Sc4	secretory carrier membrane protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-17737436-2	chr14	17737336	17737536	+	576.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113417, intron 1 of 9)	B4A|SINE|B4	76476.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-63124759-2	chr9	63124659	63124859	+	856.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22221.0	NM_172446	207667.0	Mm.36349	NM_172446	ENSMUSG00000022245	Skor1	AV273001|C230094B15Rik|Corl1|Lbxcor1	SKI family transcriptional corepressor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-82795495-4	chr1	82795398	82795598	+	803.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27042.0	NM_025453	66261.0	Mm.46325	NM_025453	ENSMUSG00000026149	Tm4sf20	1810018L02Rik	transmembrane 4 L six family member 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-51735251-2	chr15	51735151	51735351	+	736.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	130210.0	NM_080635	68135.0	Mm.289800	NM_080635	ENSMUSG00000022312	Eif3h	1110008A16Rik|40kD|9430017H16Rik|EIF3-P40|EIF3-gamma|Eif3s3	eukaryotic translation initiation factor 3, subunit H	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-83941003-4	chr2	83940907	83941107	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027964, intron 1 of 8)	intron (NM_027964, intron 1 of 8)	219.0	NM_027964	71861.0	Mm.116957	NM_027964	ENSMUSG00000034552	Zswim2	1700025P14Rik|4933437F18Rik|MEX	zinc finger SWIM-type containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-37477831-2	chr3	37477731	37477931	+	582.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021343, intron 14 of 15)	intron (NM_021343, intron 14 of 15)	57881.0	NM_021343	57815.0	Mm.172679	NM_021343	ENSMUSG00000027722	Spata5	2510048F20Rik|C78064|Spaf	spermatogenesis associated 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-34343221-4	chr14	34343138	34343338	+	979.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008133, intron 12 of 12)	intron (NM_008133, intron 12 of 12)	-1817.0	NR_027380	100041231.0	Mm.425871	NR_027380		Gm3219	-	B-cell CLL/lymphoma 7C pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85615740-3	chr12	85615643	85615843	+	870.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205053, intron 2 of 3)	intron (NM_001205053, intron 2 of 3)	15725.0	NM_001205053	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-37308187-4	chr1	37308089	37308289	+	807.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030266, intron 1 of 25)	intron (NM_030266, intron 1 of 25)	8351.0	NM_001290797	269180.0	Mm.5294	NM_030266	ENSMUSG00000026113	Inpp4a	107kDa|9630012D15|D130048C09Rik|R74740	inositol polyphosphate-4-phosphatase, type I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-54008973-4	chr6	54008899	54009099	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110484, intron 2 of 3)	intron (NR_110484, intron 2 of 3)	30308.0	NR_110484	320178.0	Mm.320413	NR_110484	ENSMUSG00000108060	4921529L05Rik	4930590G02Rik	RIKEN cDNA 4921529L05 gene	ncRNA	3.49682832262823	2.80371204138897	3.35616685339007	4.15453209157324	3.3389459322356	2.82559700810631	3.46428033749828	1.89347080982623	-0.850273668549001	0.204251829062528	0.69167790036705
Merged-chr3-81139815-2	chr3	81139715	81139915	+	627.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357746, intron 2 of 6)	URR1B|DNA|hAT-Charlie	103399.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-52417464-4	chr10	52417372	52417572	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030250)	promoter-TSS (NM_030250)	-75.0	NM_030250	52014.0	Mm.199964	NM_030250	ENSMUSG00000023068	Nus1	1600027K07Rik|AU019165|AW538011|BC003223|D10Ertd438e	NUS1 dehydrodolichyl diphosphate synthase subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-121585575-4	chr8	121585471	121585671	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-4897.0	NM_026160	67443.0	Mm.28357	NM_026160	ENSMUSG00000031812	Map1lc3b	1010001C15Rik|Atg8|LC3b|Map1lc3	microtubule-associated protein 1 light chain 3 beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-65278726-4	chr13	65278619	65278819	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178364)	promoter-TSS (NM_178364)	-135.0	NM_178364	170936.0	Mm.151546	NM_178364	ENSMUSG00000021514	Zfp369	B930030B22Rik|D230020H11Rik|NRIF2	zinc finger protein 369	protein-coding	5.26675059195375	4.75596197507489	4.51386948166423	4.66188371251663	4.0584741473597	4.87801972645485	3.44436550548482	3.94506685743517	-0.836055268865575	0.0490845975929995	0.322600509475351
Merged-chr2-52298137-4	chr2	52298027	52298227	+	977.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010889, intron 27 of 156)	intron (NM_010889, intron 27 of 156)	7125.0	NR_040620	78049.0	Mm.243883	NR_040620		4930573O16Rik	-	RIKEN cDNA 4930573O16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-117709863-2	chr14	117709810	117710010	+	633.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_011821, intron 4 of 8)	intron (NM_011821, intron 4 of 8)	243937.0	NR_105747	102465148.0		NR_105747	ENSMUSG00000098648	Mir6239	Gm28025|mmu-mir-6239	microRNA 6239	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-3199105-4	chr5	3199021	3199221	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-144772.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-32794100-2	chr19	32794000	32794200	+	564.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008960, intron 3 of 8)	intron (NM_008960, intron 3 of 8)	36523.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-73220461-2	chr6	73220361	73220561	+	574.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164669, intron 1 of 76)	MTD|LTR|ERVL-MaLR	1170.0	NM_001164669	330355.0	Mm.333166	NM_001164669	ENSMUSG00000052861	Dnah6	9830168K20|A730004I20Rik|Dnahc6|mKIAA1697|mdhc6	dynein, axonemal, heavy chain 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97473285-2	chr6	97473185	97473385	+	918.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	-13999.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59615100-4	chr15	59614995	59615195	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33559.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	4.27084918372908	4.69972886095661	4.72732366191057	4.39235734531342	4.93907471512397	4.00604360866396	2.84975662844325	3.82674667691326	-0.530455283160841	0.276810093715012	0.781366007374687
Merged-chr4-130360044-4	chr4	130359919	130360119	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153160)	promoter-TSS (NM_153160)	-27.0	NM_153160	619605.0	Mm.297196	NM_153160	ENSMUSG00000028772	Zcchc17	2810055E05Rik|HSPC251|LDC4|pNO40|pS1D	zinc finger, CCHC domain containing 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128604109-2	chr10	128604009	128604209	+	737.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14608.0	NM_010153	13867.0	Mm.373043	NM_010153	ENSMUSG00000018166	Erbb3	C76256|Erbb-3|Erbb3r|Her3	erb-b2 receptor tyrosine kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-20661849-2	chr11	20661749	20661949	+	689.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29872.0	NM_001038625	58172.0	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	0.820886593000681	1.42883348804835	1.05854619269002	1.33635302247989	1.88415553158997	1.57711446985037	1.23994762921782	1.03869821338656	1.15859670953617	0.367238935316454	0.862214284611162
Merged-chr16-23103046-2	chr16	23102946	23103146	+	595.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-4422.0	NR_152586	13682.0	Mm.260084	NM_013506	ENSMUSG00000022884	Eif4a2	4833432N07Rik|BM-010|Ddx2b|Eif4|eIF-4A-II|eIF4A-II	eukaryotic translation initiation factor 4A2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-69667429-4	chr18	69667322	69667522	+	855.491699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 15 of 19)	intron (NM_001361128, intron 15 of 19)	-258137.0	NM_201362	381175.0	Mm.266831	NM_201362	ENSMUSG00000038903	Ccdc68	BC046343	coiled-coil domain containing 68	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-92870818-2	chr17	92870718	92870918	+	639.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR17B_Mm|LTR|ERVK	-328199.0	NM_001315503	11516.0	Mm.3407	NM_009625	ENSMUSG00000024256	Adcyap1	PACAP	adenylate cyclase activating polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-61978002-3	chr9	61977894	61978094	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028748, intron 2 of 7)	(CA)n|Simple_repeat|Simple_repeat	-31195.0	NM_024245	71819.0	Mm.259374	NM_024245	ENSMUSG00000032254	Kif23	3110001D19Rik|C87313|CHO1|Knsl5|MKLP-1|MKLP1	kinesin family member 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-8770023-2	chr6	8769923	8770123	+	602.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010492, intron 1 of 13)	MIR3|SINE|MIR	8461.0	NM_010492	15893.0	Mm.275683	NM_010492	ENSMUSG00000062995	Ica1	69kDa|ICA69	islet cell autoantigen 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-12323775-4	chr12	12323691	12323891	+	885.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146119, intron 2 of 11)	intron (NM_001146119, intron 2 of 11)	61652.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	3.48031643132083	3.43922044845408	4.11528585361729	4.44602392337971	3.77895137983703	3.465691237443	4.14570824992778	4.65769812653914	0.206521495368161	0.679884653269474	0.995434762844999
Merged-chr4-105071139-2	chr4	105071039	105071239	+	702.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356568, intron 1 of 7)	MTE2a|LTR|ERVL-MaLR	38759.0	NM_178143	108079.0	Mm.48638	NM_178143	ENSMUSG00000028518	Prkaa2	2310008I11Rik|A830082D05|AMPKalpha2	protein kinase, AMP-activated, alpha 2 catalytic subunit	protein-coding	1.86906369815917	1.97466045146786	2.03383661946473	1.12969192553422	1.76849418792255	2.54223795486274	1.15604837841249	2.28883343070364	0.65439333270983	0.55172123558483	0.959312344950351
Merged-chr6-34879111-2	chr6	34879011	34879211	+	908.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1046.0	NM_001135611	78412.0	Mm.248440	NM_199145	ENSMUSG00000046806	3110062M04Rik	AL023049|Cyren|Mri	RIKEN cDNA 3110062M04 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-40540121-2	chr12	40540021	40540221	+	556.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	ORR1A2|LTR|ERVL-MaLR	94068.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-92611741-1	chr13	92611641	92611841	+	1000.0	f1_balb.idr	intron (NM_172588, intron 1 of 11)	intron (NM_172588, intron 1 of 11)	603.0	NM_172588	218442.0	Mm.297970	NM_172588	ENSMUSG00000021703	Serinc5	A130038L21Rik|AIGP3|C86123|TPO1	serine incorporator 5	protein-coding	0.104203025083203	-0.0205435936952501	-0.0256730950086987	-0.0296271335573506	0.231868193198669	0.592880559403115	-0.024542201390169	0.500505377557323	3.11607420494151	0.142948899231218	1
Merged-chr11-104467053-1	chr11	104466953	104467153	+	574.0	f0_balb.idr	intron (NM_001359634, intron 2 of 14)	intron (NM_001359634, intron 2 of 14)	1808.0	NM_001359634	76719.0	Mm.136418	NM_001081045	ENSMUSG00000018412	Kansl1	1700081L11Rik|9430041J06Rik|mKIAA1267	KAT8 regulatory NSL complex subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-54948808-4	chr6	54948684	54948884	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001171007, intron 2 of 11)	intron (NM_001171007, intron 2 of 11)	22877.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91549845-4	chr16	91549723	91549923	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008338, intron 1 of 6)	intron (NM_008338, intron 1 of 6)	2729.0	NM_008338	15980.0	Mm.249364	NM_008338	ENSMUSG00000022965	Ifngr2	Ifgr2|Ifgt	interferon gamma receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-25250381-2	chr10	25250281	25250481	+	697.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_018747, intron 5 of 7)	intron (NM_018747, intron 5 of 7)	48782.0	NM_018747	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-46881195-3	chr7	46881094	46881294	+	725.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19931.0	NM_013580	16833.0	Mm.16563	NM_013580	ENSMUSG00000030851	Ldhc	LDH-C4|Ldh-3|Ldh-x|Ldh3|Ldhc4	lactate dehydrogenase C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153147888-4	chr2	153147806	153148006	+	999.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001172117, intron 11 of 12)	intron (NM_001172117, intron 11 of 12)	-13395.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-88193758-2	chr11	88193608	88193808	+	774.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291270)	promoter-TSS (NM_001291270)	-398.0	NM_001291270	64656.0	Mm.168680	NM_024174	ENSMUSG00000023723	Mrps23	D11Bwg1153e|MRP-S23|Rpms23|S23mt	mitochondrial ribosomal protein S23	protein-coding	0.257726930108318	0.510523809919815	0.654924436954175	0.883310748527858	0.259562695684709	0.288615523323735	0.279295565634414	1.41458788952442	0.46200464571559	0.804124360978804	1
Merged-chr13-52576902-5	chr13	52576799	52576999	+	802.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3674.0	NR_046069	100040572.0	Mm.278873	NR_046069		Gm2848	-	predicted gene 2848	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-85047888-4	chr2	85047791	85047991	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001136081)	TTS (NM_001136081)	-2569.0	NM_001081260	228140.0	Mm.23606	NM_001081260	ENSMUSG00000033955	Tnks1bp1	Tab182|mKIAA1741	tankyrase 1 binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-45395224-3	chr9	45395121	45395321	+	826.966675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_022004, exon 8 of 8)	3' UTR (NM_022004, exon 8 of 8)	-4488.0	NR_028499	11936.0	Mm.22742	NM_007503	ENSMUSG00000059412	Fxyd2	Atp1g1	FXYD domain-containing ion transport regulator 2	protein-coding	2.38606499019219	3.3860398173173	2.71586983553353	2.85266622542719	2.40612183959906	3.40986624700187	2.73712722195267	2.86722817866868	0.0374125993302062	0.957215560894827	0.998431161219273
Merged-chr7-143649599-4	chr7	143649449	143649649	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_023680, exon 1 of 7)	exon (NM_023680, exon 1 of 7)	115.0	NM_001311145	79202.0	Mm.261384	NM_023680	ENSMUSG00000010751	Tnfrsf22	2810028K06Rik|C130035G06Rik|SOBa|Tnfrh2|Tnfrsf1al2|mDcTrailr2	tumor necrosis factor receptor superfamily, member 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-157142173-4	chr2	157142072	157142272	+	884.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-6950.0	NM_018851	56045.0	Mm.248478	NM_018851	ENSMUSG00000027639	Samhd1	E330031J07Rik|Mg11	SAM domain and HD domain, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-150751326-2	chr2	150751226	150751426	+	978.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355068, intron 1 of 13)	intron (NM_001355068, intron 1 of 13)	2245.0	NM_172117	12497.0	Mm.275524	NM_172117	ENSMUSG00000033068	Entpd6	2700026H11Rik|Cd39l2|NTPDase-6	ectonucleoside triphosphate diphosphohydrolase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-90240400-3	chr11	90240302	90240502	+	853.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9074.0	NM_026178	67468.0	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-97590907-4	chr15	97590809	97591009	+	954.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	114913.0	NM_028003	71919.0	Mm.12255	NM_028003	ENSMUSG00000022466	Rpap3	2310042P20Rik|D15Ertd682e	RNA polymerase II associated protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-41651754-4	chr7	41651624	41651824	+	881.716675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001360680)	TTS (NM_001360680)	-16290.0	NR_004441	75835.0	Mm.159597	NM_029460	ENSMUSG00000074164	Vmn2r-ps54	1700108E19Rik|4930562N12Rik|Casr-rs5|Gm10948|Gprc2a-rs5	vomeronasal 2, receptor, pseudogene 54	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-129936718-3	chr3	129936618	129936818	+	870.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025779, intron 1 of 7)	intron (NM_025779, intron 1 of 7)	33488.0	NM_025779	66815.0	Mm.31056	NM_025779	ENSMUSG00000027994	Mcub	9030408N13Rik|Ccdc109b	mitochondrial calcium uniporter dominant negative beta subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-85513569-2	chr6	85513469	85513669	+	812.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020596)	promoter-TSS (NM_020596)	20.0	NM_020596	13656.0	Mm.44137	NM_020596	ENSMUSG00000071341	Egr4	NGF1-C|NGFI-C|NGFIC|pAT133	early growth response 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-44962410-4	chr2	44962310	44962510	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60767.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-43722232-3	chr5	43722146	43722346	+	718.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359906, intron 26 of 37)	intron (NM_001359906, intron 26 of 37)	59867.0	NM_001359903	231214.0	Mm.44434	NM_172274	ENSMUSG00000039765	Cc2d2a	5730509K17Rik|b2b1035Clo	coiled-coil and C2 domain containing 2A	protein-coding	1.57995186226451	3.18163755017627	2.58041796715501	1.40017869184963	3.24046110737148	2.92615689527178	3.09826649358233	2.51768824878131	1.08574793170344	0.203609662389565	0.69073762375589
Merged-chr2-70990366-4	chr2	70990272	70990472	+	971.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145524, intron 3 of 9)	intron (NM_145524, intron 3 of 9)	28002.0	NM_001110512	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-66937292-4	chr10	66937199	66937399	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16915.0	NR_138561	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105901163-2	chr8	105901063	105901263	+	905.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_173432, intron 1 of 2)	intron (NM_173432, intron 1 of 2)	689.0	NM_173432	244631.0	Mm.27627	NM_173432	ENSMUSG00000048310	Pskh1	AW539964|E130013P03Rik|b2b1230Clo	protein serine kinase H1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-64624416-3	chr14	64624336	64624536	+	736.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28095.0	NM_001081177	16554.0	Mm.23611	NM_001081177	ENSMUSG00000060012	Kif13b	5330429L19Rik|6030414C01|AI429803|C130021D12Rik|GAKIN	kinesin family member 13B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98150512-4	chr11	98150400	98150600	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028149)	promoter-TSS (NM_028149)	-884.0	NM_028149	72194.0	Mm.218350	NM_028149	ENSMUSG00000020883	Fbxl20	2610511F20Rik|4632423N09Rik|AI849362|AL117906|C86145|Fbl2|Scr|mKIAA4147	F-box and leucine-rich repeat protein 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-62857427-3	chr9	62857344	62857544	+	924.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001102468)	promoter-TSS (NM_001102468)	-660.0	NM_001102468	75600.0	Mm.440576	NM_138304	ENSMUSG00000032246	Calml4	2010002G05Rik	calmodulin-like 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-164248156-4	chr1	164248041	164248241	+	892.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_054087)	promoter-TSS (NM_054087)	-905.0	NM_001276455	116914.0	Mm.35444	NM_054087	ENSMUSG00000040918	Slc19a2	AV276020|AW322295|DDA1|THTR1|TRMA|ThTr-1	solute carrier family 19 (thiamine transporter), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-66884825-2	chr9	66884725	66884925	+	567.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173413, intron 1 of 7)	RSINE1|SINE|B4	34880.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-31178437-3	chr6	31178338	31178538	+	859.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110470, intron 2 of 2)	intron (NR_110470, intron 2 of 2)	40036.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-88206585-2	chr7	88206485	88206685	+	686.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-71500.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-65866732-1	chr5	65866632	65866832	+	543.0	f1_c57bl6.idr	intron (NM_001081105, intron 1 of 2)	intron (NM_001081105, intron 1 of 2)	3163.0	NM_001081105	74734.0	Mm.20323	NM_001081105	ENSMUSG00000029204	Rhoh	5830400A04Rik|AU019774|Arhh	ras homolog family member H	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-77056893-3	chr12	77056817	77057017	+	866.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-94669.0	NM_001146176	17187.0	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-120747012-2	chr5	120746876	120747076	+	626.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347448, intron 2 of 11)	ORR1E|LTR|ERVL-MaLR	2872.0	NM_145227	246728.0	Mm.260926	NM_145227	ENSMUSG00000032690	Oas2	Oasl11	2'-5' oligoadenylate synthetase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-121197978-2	chr5	121197878	121198078	+	555.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6523.0	NM_011290	19988.0	Mm.262021	NM_011290	ENSMUSG00000029614	Rpl6	Taxreb107	ribosomal protein L6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-33372574-3	chr5	33372486	33372686	+	924.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_021500, exon 9 of 9)	3' UTR (NM_021500, exon 9 of 9)	-6110.0	NR_153108	71101.0	Mm.132178	NM_027674	ENSMUSG00000037355	Uvssa	4933407H18Rik|D330017J19Rik|Kiaa1530|mKIAA1530	UV stimulated scaffold protein A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-54603455-2	chr11	54603355	54603555	+	816.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252497, intron 1 of 11)	Lx2|LINE|L1	7309.0	NM_001252497	192786.0	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-39616641-2	chr4	39616563	39616763	+	627.0	f0_balb.idr|f1_balb.idr	Intergenic	Lx9|LINE|L1	166370.0	NM_001081095	75471.0	Mm.23522	NM_001081095	ENSMUSG00000028287	1700009N14Rik	AI429145	RIKEN cDNA 1700009N14 gene	protein-coding	-0.0566774134807055	-0.0296031325527479	-0.0383050312769938	-0.0451278941964975	-0.0549410448134445	1.23927907437761	0.531500984038043	0.166809185417913	4.38030696247716	0.0336906461731387	1
Merged-chr13-107619614-1	chr13	107619514	107619714	+	824.0	f1_balb.idr	Intergenic	Intergenic	-67783.0	NR_045900	72257.0	Mm.234155	NR_045900	ENSMUSG00000102000	1700006H21Rik	-	RIKEN cDNA 1700006H21 gene	ncRNA	-0.782390101874155	-0.14214928202986	-0.439164649644749	-0.778056364136865	-0.781745375115801	-0.771124917157624	-0.774700250864294	-0.777600363199559	-3.19422132273467	0.270259555383638	1
Merged-chr4-136893661-2	chr4	136893550	136893750	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007574)	promoter-TSS (NM_007574)	-736.0	NM_007574	12262.0	Mm.439732	NM_007574	ENSMUSG00000036896	C1qc	AI385742|C1qg|Ciqc	complement component 1, q subcomponent, C chain	protein-coding	3.6863627474115	3.41639621543216	3.46979169081022	2.15688806257222	3.71499162973715	3.34545141993452	3.57241023822028	2.6754182006149	0.130858729408648	0.836836403142972	0.998431161219273
Merged-chr2-5769880-4	chr2	5769797	5769997	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55135.0	NM_177343	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-31847534-2	chr17	31847434	31847634	+	679.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010831, intron 12 of 13)	intron (NM_010831, intron 12 of 13)	8270.0	NM_010831	17691.0	Mm.290941	NM_010831	ENSMUSG00000024042	Sik1	Hrt-20|Msk|Sik|Sik-1|Snf1lk	salt inducible kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-148478497-4	chr2	148478397	148478597	+	829.233337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34962.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134261585-1	chr6	134261485	134261685	+	716.0	f0_balb.idr	intron (NM_001303102, intron 6 of 8)	intron (NM_001303102, intron 6 of 8)	-134744.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-130173370-2	chr5	130173270	130173470	+	727.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359233, intron 1 of 7)	intron (NM_001359233, intron 1 of 7)	1551.0	NM_001359233	56715.0	Mm.288639	NM_019983	ENSMUSG00000025340	Rabgef1	Rab5ef|Rabex5|Rin2	RAB guanine nucleotide exchange factor (GEF) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-76524842-4	chr5	76524762	76524962	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4445.0	NM_001359372	69940.0	Mm.403233	NM_027270	ENSMUSG00000036435	Exoc1	2810407P21Rik|A730011E05Rik|SEC3|Sec3l1|Sec3p	exocyst complex component 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-64315779-4	chr13	64315714	64315914	+	929.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3104.0	NM_025370	66129.0	Mm.491110	NM_025370	ENSMUSG00000021482	Aaed1	1110018J18Rik|AI849003	AhpC/TSA antioxidant enzyme domain containing 1	protein-coding	2.59721633066417	3.38349313148315	2.07640092889756	1.61761238933117	2.32473778929881	2.94613959402238	2.84615635932714	1.62582073550029	-0.127464848397229	0.885028284447067	0.998431161219273
Merged-chr18-54901069-4	chr18	54900972	54901172	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360787, intron 2 of 8)	intron (NM_001360787, intron 2 of 8)	89108.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-44673653-3	chr13	44673629	44673829	+	628.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57045.0	NM_021878	16468.0	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-149696411-3	chr4	149696298	149696498	+	642.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029837, intron 1 of 23)	intron (NM_001029837, intron 1 of 23)	2310.0	NM_001164050	18707.0	Mm.229108	NM_008840	ENSMUSG00000039936	Pik3cd	2410099E07Rik|2610208K16Rik|AW545373|p110delta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding	1.7676510340087	1.47524367782032	1.77343255326924	1.85654707279558	1.7812236281266	1.98605290815731	2.33627496057192	1.86560577493653	0.844699133645927	0.386030608583362	0.876318810939384
Merged-chr4-62696139-3	chr4	62696050	62696250	+	751.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134257, intron 11 of 15)	intron (NM_134257, intron 11 of 15)	22176.0	NM_001310706	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97251157-1	chr6	97251057	97251257	+	674.0	f1_c57bl6.idr	intron (NM_001081157, intron 1 of 2)	intron (NM_001081157, intron 1 of 2)	1623.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122602451-3	chr5	122602398	122602598	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009879, intron 6 of 18)	intron (NM_009879, intron 6 of 18)	12046.0	NM_001358919	12589.0	Mm.10125	NM_009879	ENSMUSG00000029469	Ift81	AW060663|Cdv-1|Cdv-1r|Cdv1	intraflagellar transport 81	protein-coding	3.80748518370899	4.40296762517527	4.61904601238405	4.32011107884888	1.36029717664055	2.79879287026061	1.53716609175474	2.58869329410882	-3.410126520627	4.42977583661299e-07	3.28076854862239e-05
Merged-chr13-21830277-2	chr13	21830177	21830377	+	773.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	1881.0	NM_175657	319161.0	Mm.261664	NM_175657	ENSMUSG00000069305	Hist1h4n	-	histone cluster 1, H4n	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-3129755-5	chr11	3129671	3129871	+	915.56665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_003517, exon 6 of 7)	non-coding (NR_003517, exon 6 of 7)	5750.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-112457201-1	chr2	112457101	112457301	+	856.3333130000001	f0_balb.idr	intron (NM_133749, intron 1 of 4)	intron (NM_133749, intron 1 of 4)	2176.0	NM_133749	73024.0	Mm.268027	NM_133749	ENSMUSG00000055943	Emc7	2900064A13Rik|AI451465|ORF3|c11orf3	ER membrane protein complex subunit 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-91134118-4	chr8	91134020	91134220	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302337)	promoter-TSS (NM_001302337)	-93.0	NM_001302268	14339.0	Mm.324588	NM_010241	ENSMUSG00000031667	Aktip	AL023020|Fif|Ft|Ft1|Fts	thymoma viral proto-oncogene 1 interacting protein	protein-coding	7.76525901917804	7.91188546342118	8.55025432486736	7.72121979217698	7.84494776869198	7.87523934324307	8.55275173356184	8.21238926469073	0.127104537766918	0.503717801977925	0.939810209640962
Merged-chr10-88352857-4	chr10	88352760	88352960	+	922.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027878, intron 1 of 6)	intron (NM_027878, intron 1 of 6)	4215.0	NM_027878	71712.0	Mm.35450	NM_027878	ENSMUSG00000020057	Dram1	1200002N14Rik|Dram	DNA-damage regulated autophagy modulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-37616842-2	chr9	37616742	37616942	+	935.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_011734, exon 2 of 10)	exon (NM_011734, exon 2 of 10)	2995.0	NM_011734	22619.0	Mm.196345	NM_011734	ENSMUSG00000001942	Siae	LSE|Ysg2	sialic acid acetylesterase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4069153-2	chr19	4069053	4069253	+	865.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR19-int|LTR|ERVK	-9706.0	NM_001362043	225884.0	Mm.440201	NM_144869	ENSMUSG00000058216	Gstp3	-	glutathione S-transferase pi 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-110840969-4	chr12	110840840	110841040	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011973)	promoter-TSS (NM_011973)	-1.0	NM_011973	26448.0	Mm.140948	NM_011973	ENSMUSG00000056458	Mok	RAGE1|Rage|Stk30	MOK protein kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70808447-3	chr8	70808358	70808558	+	844.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008353)	promoter-TSS (NM_008353)	9.0	NM_008353	16161.0	Mm.731	NM_008353	ENSMUSG00000000791	Il12rb1	CD212|IL-12R[b]	interleukin 12 receptor, beta 1	protein-coding	-1.58994551673671	-1.55912852307891	-1.56844783632235	-1.57610299769523	-1.18549093183599	-1.55710898902261	-1.56633814807757	-1.57473272746952	1.78703309985663	0.610309988231842	1
Merged-chr3-36572808-2	chr3	36572708	36572908	+	739.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_027810)	TTS (NM_027810)	230.0	NM_009828	12428.0	Mm.4189	NM_009828	ENSMUSG00000027715	Ccna2	AA408589|Ccn-1|Ccn1|Ccna|CycA2|Cyca	cyclin A2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-6335537-4	chr2	6335441	6335641	+	977.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080548, intron 1 of 14)	intron (NM_001080548, intron 1 of 14)	12784.0	NM_001080548	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-20741683-4	chr18	20741584	20741784	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019737, intron 1 of 8)	intron (NM_019737, intron 1 of 8)	4720.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101107603-2	chr7	101107486	101107686	+	699.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4|SINE|ID	-1189.0	NM_001146010	207278.0	Mm.263041	NM_199012	ENSMUSG00000030691	Fchsd2	BC034086|R74866|Sh3md3|mKIAA0769	FCH and double SH3 domains 2	protein-coding	0.220747446776058	1.38609372851797	0.241316491131356	0.23366949231919	0.799967098379952	0.253265139732643	0.923915702083656	0.235012597222886	-0.292980226019789	0.882060866272345	1
Merged-chr13-70634714-2	chr13	70634614	70634814	+	548.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144837, intron 1 of 18)	intron (NM_144837, intron 1 of 18)	2920.0	NM_144837	218333.0	Mm.139738	NM_144837	ENSMUSG00000034525	Ice1	C77245|mKIAA0947	interactor of little elongation complex ELL subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-31564507-4	chr17	31564401	31564601	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016670)	promoter-TSS (NM_016670)	-272.0	NR_027493	18771.0	Mm.259295	NM_016670	ENSMUSG00000006705	Pknox1	D17Wsu76e|PREP1	Pbx/knotted 1 homeobox	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-85844259-4	chr11	85844149	85844349	+	897.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	11634.0	NM_009324	21385.0	Mm.287052	NM_009324	ENSMUSG00000000093	Tbx2	-	T-box 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-102824391-2	chr2	102824247	102824447	+	710.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039150, intron 11 of 13)	intron (NM_001039150, intron 11 of 13)	77318.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	-0.232266081403835	-0.460693634223037	-0.463792738357316	-0.0829727510489169	-0.226423527403894	-0.459991606461023	-0.300886159739425	-0.465753048101534	-0.698084837558707	0.776637308599255	1
Merged-chr14-55092468-4	chr14	55092380	55092580	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039198)	promoter-TSS (NM_001039198)	-432.0	NM_001039198	239102.0	Mm.441113	NM_001039198	ENSMUSG00000040721	Zfhx2	ZFH-5	zinc finger homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70250288-1	chr11	70250188	70250388	+	548.0	f1_c57bl6.idr	intron (NM_007440, intron 7 of 13)	L2b|LINE|L2	5082.0	NM_001331118	11684.0	Mm.12286	NM_007440	ENSMUSG00000000320	Alox12	9930022G08Rik|Alox12p|P-12LO	arachidonate 12-lipoxygenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-48408585-3	chr17	48408438	48408638	+	958.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110832, intron 1 of 9)	intron (NM_001110832, intron 1 of 9)	1282.0	NM_001110832	18044.0	Mm.4929	NM_010913	ENSMUSG00000023994	Nfya	AA407810|Cbf-b|SEZ-10|SEZ10	nuclear transcription factor-Y alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71637553-6	chr8	71637434	71637634	+	920.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029873, intron 35 of 41)	intron (NM_001029873, intron 35 of 41)	-6428.0	NR_106035	102466799.0		NR_106035	ENSMUSG00000098976	Mir6769b	Gm27546|mmu-mir-6769b	microRNA 6769b	ncRNA	-1.5081512200108	-1.16747411261397	-1.48555311441572	-1.49360012887111	-1.35277997577344	-1.47363385318999	-1.48333543526107	-1.49215971713098	-0.845322528307886	0.808204946884173	1
Merged-chr17-32215798-2	chr17	32215698	32215898	+	848.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286630, intron 8 of 19)	intron (NM_001286630, intron 8 of 19)	-26122.0	NR_102329	100043434.0		NR_102329		Gm4432	-	predicted gene 4432	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-21646283-4	chr19	21646209	21646409	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025423, intron 1 of 3)	MTD|LTR|ERVL-MaLR	6482.0	NM_025423	66206.0	Mm.272430	NM_025423	ENSMUSG00000035171	1110059E24Rik	-	RIKEN cDNA 1110059E24 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-75965199-4	chr2	75965110	75965310	+	919.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12969.0	NM_001081228	620631.0	Mm.389286	NM_001081228	ENSMUSG00000075272	Ttc30a2	-	tetratricopeptide repeat domain 30A2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-40229956-4	chr10	40229862	40230062	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042556, intron 7 of 9)	intron (NM_001042556, intron 7 of 9)	17017.0	NM_001042556	67239.0	Mm.11480	NM_023323	ENSMUSG00000038510	Rpf2	2810470K21Rik|AU040229|AU043242|Bxdc1	ribosome production factor 2 homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-16280955-2	chr19	16280855	16281055	+	771.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_008139, intron 2 of 6)	intron (NM_008139, intron 2 of 6)	34049.0	NR_105832	102465218.0		NR_105832	ENSMUSG00000098718	Mir496b	Gm28028|mmu-mir-496b	microRNA 496b	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-117907727-4	chr6	117907620	117907820	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166428)	intron (NM_133834, intron 1 of 3)	-84.0	NM_001166428	98758.0	Mm.422979	NM_133834	ENSMUSG00000042079	Hnrnpf	4833420I20Rik|AA407306|Hnrpf	heterogeneous nuclear ribonucleoprotein F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-51281859-2	chr3	51281759	51281959	+	831.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_023502, intron 4 of 9)	A-rich|Low_complexity|Low_complexity	-4345.0	NM_001291062	69257.0	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53060794-2	chr4	53060694	53060894	+	774.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 32 of 49)	intron (NM_013454, intron 32 of 49)	48914.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34263213-4	chr17	34263123	34263323	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207105)	promoter-TSS (NM_207105)	-4.0	NM_207105	14961.0	Mm.254067	NM_207105	ENSMUSG00000073421	H2-Ab1	AI845868|Abeta|H-2Ab|H2-Ab|I-Abeta|IAb|Ia-2|Ia2|Rmcs1	histocompatibility 2, class II antigen A, beta 1	protein-coding	7.07315603812794	7.76873925816029	7.33975923995387	7.53163748060043	7.37042455859341	8.21824145911148	7.61044736657949	7.36073368247659	0.24252185933181	0.227310931223075	0.720301392319614
Merged-chr8-69071188-4	chr8	69071057	69071257	+	976.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153054, intron 5 of 16)	intron (NM_153054, intron 5 of 16)	-17579.0	NM_007509	11966.0	Mm.249096	NM_007509	ENSMUSG00000006273	Atp6v1b2	AI194269|AI790362|Atp6b2|HO57|R74844	ATPase, H+ transporting, lysosomal V1 subunit B2	protein-coding	0.617438549745846	0.68512321058975	1.7223996657403	0.646934920311192	1.33419793019203	1.39038548204123	2.46110981313237	0.649941008382244	1.89388568254447	0.202670294045698	0.688808411556785
Merged-chr19-37511529-2	chr19	37511429	37511629	+	676.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38889.0	NM_175353	107371.0	Mm.24865	NM_175353	ENSMUSG00000053799	Exoc6	4833405E05Rik|AW413330|C430002C19|Sec15|Sec15l1|hbd|msec15	exocyst complex component 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-122360603-2	chr2	122360505	122360705	+	713.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013829, intron 1 of 5)	intron (NM_001013829, intron 1 of 5)	8313.0	NM_001013829	435684.0	Mm.458215	NM_001013829	ENSMUSG00000033256	Shf	-	Src homology 2 domain containing F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-72833728-6	chr15	72833566	72833766	+	864.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164641, intron 17 of 17)	L2|LINE|L2	-23342.0	NR_002864	353342.0	Mm.440245	NR_002864	ENSMUSG00000106847	Peg13	-	paternally expressed 13	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-87122413-8	chr6	87122317	87122517	+	827.197937	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17671.0	NM_001167937	52372.0	Mm.282851	NM_001167937	ENSMUSG00000090891	D6Ertd527e	AU043841	DNA segment, Chr 6, ERATO Doi 527, expressed	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126745106-2	chr7	126745006	126745206	+	824.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1G3|LTR|ERVL-MaLR	-14520.0	NM_011952	26417.0	Mm.8385	NM_011952	ENSMUSG00000063065	Mapk3	Erk-1|Erk1|Ert2|Esrk1|Mnk1|Mtap2k|Prkm3|p44|p44erk1|p44mapk	mitogen-activated protein kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-161414719-2	chr2	161414619	161414819	+	585.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17B|LTR|ERVK	-305633.0	NR_126509	71389.0	Mm.122738	NM_173368	ENSMUSG00000057133	Chd6	5430439G14Rik|6330406J24Rik|CHD-6	chromodomain helicase DNA binding protein 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-193875476-2	chr1	193875376	193875576	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	347283.0	NR_040477	74942.0	Mm.60689	NR_040477	ENSMUSG00000103692	4930503O07Rik	-	RIKEN cDNA 4930503O07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-74293028-2	chr1	74292928	74293128	+	824.833374	f1_balb.idr|f1_c57bl6.idr	exon (NM_027154, exon 4 of 12)	exon (NM_027154, exon 4 of 12)	7994.0	NM_001039509	56695.0	Mm.384726	NM_019999	ENSMUSG00000026179	Pnkd	2210013N15Rik|2810403H05Rik|AI854243|Brp17|MNCb-5687|MR-1|Tahccp2	paroxysmal nonkinesiogenic dyskinesia	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95632914-4	chr3	95632815	95633015	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_019561)	TTS (NM_019561)	7935.0	NM_001026212	56205.0	Mm.241365	NM_019561	ENSMUSG00000038619	Ensa	1700020C18Rik|2610007F17Rik|AI451924	endosulfine alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46801453-2	chr8	46801353	46801553	+	835.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_152560, intron 2 of 7)	intron (NR_152560, intron 2 of 7)	61708.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-120888673-1	chr5	120888573	120888773	+	560.0	f1_c57bl6.idr	Intergenic	BGLII_B|LTR|ERVK	-1060.0	NR_126529	23960.0	Mm.389688	NM_011852	ENSMUSG00000066861	Oas1g	AI449562|L2|Mmu-L|Mmu-L2|Oas1b|Oias-1|Oias1	2'-5' oligoadenylate synthetase 1G	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-84951613-4	chr18	84951509	84951709	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025969)	promoter-TSS (NM_025969)	-85.0	NM_025969	67105.0	Mm.250617	NM_025969	ENSMUSG00000024645	Timm21	1700034H14Rik|2700002I20Rik	translocase of inner mitochondrial membrane 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-132246428-2	chr2	132246328	132246528	+	747.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001141971, intron 1 of 3)	intron (NM_001141971, intron 1 of 3)	1360.0	NM_027478	70612.0	Mm.30116	NM_027478	ENSMUSG00000027341	Tmem230	5730494N06Rik|AA407821	transmembrane protein 230	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-116206127-3	chr3	116206034	116206234	+	814.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47350.0	NM_022427	64378.0	Mm.40025	NM_022427	ENSMUSG00000068696	Gpr88	AW061286|Strg	G-protein coupled receptor 88	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-32108107-4	chr19	32107989	32108189	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4949.0	NM_018830	54447.0	Mm.491229	NM_018830	ENSMUSG00000024887	Asah2	AI585898	N-acylsphingosine amidohydrolase 2	protein-coding	4.22481255524202	4.37627751666663	5.06705198041413	3.84911904972992	4.55117256552132	4.20613644202313	5.30981627975575	3.79268314566865	0.168557069940791	0.712448051018031	0.998431161219273
Merged-chr3-41034753-2	chr3	41034653	41034853	+	720.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	48293.0	NM_027558	70804.0	Mm.40321	NM_027558	ENSMUSG00000049940	Pgrmc2	4631434O19Rik|5730409G06Rik|DG6|PMBP	progesterone receptor membrane component 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-105599494-2	chr5	105599394	105599594	+	890.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133897, intron 3 of 3)	intron (NM_133897, intron 3 of 3)	80023.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-45241620-3	chr9	45241523	45241723	+	946.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198971, intron 2 of 4)	intron (NM_001198971, intron 2 of 4)	25084.0	NR_106054	102466803.0		NR_106054	ENSMUSG00000098361	Mir7086	Gm27643|mmu-mir-7086	microRNA 7086	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-82911723-4	chr18	82911609	82911809	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183033, intron 1 of 5)	intron (NM_183033, intron 1 of 5)	830.0	NM_183033	329003.0	Mm.326526	NM_183033	ENSMUSG00000058881	Zfp516	C330029B10Rik|D230016L03|Zfp26l|Znf516|mKIAA0222	zinc finger protein 516	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-25790830-3	chr14	25790726	25790926	+	954.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21970.0	NM_001101433	71918.0	Mm.41904	NM_001101433	ENSMUSG00000055538	Zcchc24	2310047A01Rik	zinc finger, CCHC domain containing 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127129174-2	chr7	127129061	127129261	+	562.5	f0_c57.idr|f1_balb.idr	Intergenic	B4A|SINE|B4	-7132.0	NM_133686	67375.0	Mm.26928	NM_133686	ENSMUSG00000030674	Qprt	2410027J01Rik|AI647766|QPRTase	quinolinate phosphoribosyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-33893711-1	chr17	33893611	33893811	+	612.0	f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-3078.0	NM_001195298	100502766.0	Mm.335713	NM_001195298	ENSMUSG00000079553	Kifc1	100042970|Gm4137|HSET|KNSL2|Kifc5a|Knsl2a|Tctex-7|Tctex-7A|Tctex7|Tctex7a	kinesin family member C1	protein-coding	0.66059202187591	0.291926923264985	0.284681796459492	1.17873538496524	0.669633067759168	0.497583219013799	0.286282476479012	0.453636636811415	-1.09608143395102	0.542492504018943	1
Merged-chr15-95883815-4	chr15	95883717	95883917	+	918.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 2 of 19)	intron (NM_175344, intron 2 of 19)	-53745.0	NR_155276	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-146784833-3	chr5	146784742	146784942	+	788.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011669, intron 1 of 8)	MLT1E2|LTR|ERVL-MaLR	10114.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-63611343-4	chr15	63611240	63611440	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-131732.0	NR_045279	432958.0	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-118695985-2	chr2	118695885	118696085	+	744.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033254, intron 10 of 10)	intron (NM_001033254, intron 10 of 10)	7978.0	NM_001081971	383787.0	Mm.35758	NM_001081971	ENSMUSG00000078137	Ankrd63	Gm1337	ankyrin repeat domain 63	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120540234-4	chr8	120540131	120540331	+	941.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145896, intron 1 of 15)	intron (NM_001145896, intron 1 of 15)	1535.0	NR_106159	102466849.0		NR_106159	ENSMUSG00000098280	Mir7687	Gm27573|mmu-mir-7687	microRNA 7687	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-99019659-3	chr4	99019543	99019743	+	739.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026082, intron 16 of 47)	intron (NM_026082, intron 16 of 47)	-11311.0	NM_013913	30924.0	Mm.28341	NM_013913	ENSMUSG00000028553	Angptl3	hypl	angiopoietin-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-151494148-4	chr2	151494025	151494225	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291074)	promoter-TSS (NM_001291074)	-57.0	NM_001291074	386649.0	Mm.419479	NM_198326	ENSMUSG00000027455	Nsfl1c	Munc-18c|Stxbp3a|p47	NSFL1 (p97) cofactor (p47)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89337665-5	chr3	89337467	89337667	+	910.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007910, intron 1 of 3)	intron (NM_007910, intron 1 of 3)	461.0	NM_007910	13639.0	Mm.16332	NM_007910	ENSMUSG00000028040	Efna4	EFL-4|Epl4|LERK-4	ephrin A4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-5167142-2	chr3	5167042	5167242	+	563.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	-51412.0	NM_030708	80892.0	Mm.41522	NM_030708	ENSMUSG00000025255	Zfhx4	A930021B15|C130041O22Rik|Zfh-4|Zfh4	zinc finger homeodomain 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101985365-1	chr11	101985265	101985465	+	953.5	f1_c57bl6.idr	promoter-TSS (NM_028207)	promoter-TSS (NM_028207)	-574.0	NM_028207	72349.0	Mm.196295	NM_028207	ENSMUSG00000003518	Dusp3	2210015O03Rik|5031436O03Rik|T-DSP11|VHR	dual specificity phosphatase 3 (vaccinia virus phosphatase VH1-related)	protein-coding	0.718937152844297	1.85152629973964	0.391217085774485	0.380917206039546	0.563565411419569	0.40717233618032	1.12481784638036	0.60324004917205	-1.24610091009703	0.445763605239456	0.913297769068133
Merged-chr10-128891033-3	chr10	128891129	128891329	+	908.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010272, intron 1 of 2)	CpG	489.0	NM_010272	14561.0	Mm.299218	NM_010272	ENSMUSG00000025352	Gdf11	BMP-11|Bmp11	growth differentiation factor 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-174043755-2	chr2	174043655	174043855	+	566.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-33296.0	NM_172675	228960.0	Mm.277977	NM_172675	ENSMUSG00000027522	Stx16	4930401D03|5430410K23Rik|6330500A18Rik|AI648908|AW553605|Syn16	syntaxin 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-17659143-4	chr14	17659034	17659234	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1826.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-31878754-4	chr16	31878646	31878846	+	803.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013900)	promoter-TSS (NM_013900)	-64.0	NM_013900	30060.0	Mm.30988	NM_013900	ENSMUSG00000022780	Meltf	CD228|MTf|Mfi2	melanotransferrin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127211654-4	chr10	127211575	127211775	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_054097)	promoter-TSS (NM_054097)	-53.0	NM_001359280	117150.0	Mm.22682	NM_054097	ENSMUSG00000025417	Pip4k2c	Pip5k2c	phosphatidylinositol-5-phosphate 4-kinase, type II, gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65572824-2	chr9	65572724	65572924	+	837.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153119, intron 2 of 5)	B1_Mur1|SINE|Alu	7263.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-92504411-4	chr5	92504325	92504525	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007644, intron 1 of 11)	intron (NM_007644, intron 1 of 11)	1232.0	NM_007644	12492.0	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-12782621-2	chr17	12782521	12782721	+	641.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_027784, intron 2 of 2)	intron (NR_027784, intron 2 of 2)	-12915.0	NM_010515	16004.0	Mm.26553	NM_010515	ENSMUSG00000023830	Igf2r	AI661837|CD222|CI-MPR|M6P/IGF2R|Mpr300	insulin-like growth factor 2 receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-3353548-4	chr8	3353446	3353646	+	964.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001033378, exon 1 of 11)	5' UTR (NM_001033378, exon 1 of 11)	131.0	NM_001033378	319493.0	Mm.234565	NM_001033378	ENSMUSG00000074497	A430078G23Rik	-	RIKEN cDNA A430078G23 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123160006-1	chr5	123159906	123160106	+	775.0	f1_balb.idr	exon (NM_001040398, exon 12 of 17)	exon (NM_001040398, exon 12 of 17)	17813.0	NM_001040398	208043.0	Mm.250391	NM_177581	ENSMUSG00000038384	Setd1b	AA516740|BC035291|KMT2G|mKIAA1076	SET domain containing 1B	protein-coding	-0.0922365578426654	0.744341492634671	-0.0697153619551719	-0.0780284707982181	-0.090089266483823	1.38457031039947	-0.0673709681935373	-0.0765633455101127	1.39033030195027	0.52603614582248	1
Merged-chr17-75412067-2	chr17	75411967	75412167	+	859.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3B|LINE|L1	-23838.0	NM_001166493	240168.0	Mm.329203	NM_207246	ENSMUSG00000071042	Rasgrp3	BC066069|Gm327	RAS, guanyl releasing protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-107112760-2	chr3	107112660	107112860	+	827.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008417, exon 3 of 3)	3' UTR (NM_008417, exon 3 of 3)	11193.0	NM_008417	16490.0	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-118522283-2	chr2	118522183	118522383	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22304.0	NR_138603	171543.0	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111912515-4	chr12	111912412	111912612	+	939.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4457.0	NM_011625	21981.0	Mm.313076	NM_011625	ENSMUSG00000021285	Ppp1r13b	AI449786|ASPP1|AW545810|Tp53bp2|Trp53bp2|p85	protein phosphatase 1, regulatory (inhibitor) subunit 13B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-47075771-2	chr7	47075671	47075871	+	540.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	7453.0	NR_106023	102465639.0		NR_106023	ENSMUSG00000098960	Mir7056	Gm27696|mmu-mir-7056	microRNA 7056	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-120836168-4	chr6	120836070	120836270	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153516)	promoter-TSS (NM_153516)	-60.0	NM_153516	94044.0	Mm.27990	NM_153516	ENSMUSG00000009112	Bcl2l13	BCL-RAMBO|E430016C20Rik|Mil-1|Mil1	BCL2-like 13 (apoptosis facilitator)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-114994366-2	chr4	114994266	114994466	+	822.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-5752.0	NM_001304559	20460.0	Mm.3988	NM_009185	ENSMUSG00000028718	Stil	Sil	Scl/Tal1 interrupting locus	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129121187-3	chr4	129121112	129121312	+	907.75	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010471)	promoter-TSS (NM_010471)	91.0	NM_010471	15444.0	Mm.384452	NM_010471	ENSMUSG00000028785	Hpca	-	hippocalcin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80500348-4	chr7	80500236	80500436	+	958.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042527, intron 7 of 21)	intron (NM_001042527, intron 7 of 21)	34662.0	NM_007550	12144.0	Mm.12932	NM_007550	ENSMUSG00000030528	Blm	-	Bloom syndrome, RecQ like helicase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-16249353-4	chr14	16249291	16249491	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001362433)	promoter-TSS (NM_001362433)	77.0	NM_001362432	59007.0	Mm.258381	NM_021504	ENSMUSG00000021785	Ngly1	1110002C09Rik|PNGase|Png1	N-glycanase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-34231905-1	chr10	34231805	34232005	+	560.0	f0_balb.idr	Intergenic	Intergenic	-24354.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-93160668-4	chr10	93160563	93160763	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146239)	promoter-TSS (NM_146239)	-213.0	NM_146239	237459.0	Mm.217404	NM_146239	ENSMUSG00000020015	Cdk17	6430598J10Rik|Pctk2	cyclin-dependent kinase 17	protein-coding	5.70847078613896	5.65171246937179	5.60052773213818	5.7527892712373	5.31583195466724	5.5336173358743	5.73971667833818	5.86008199512788	-0.0627769811809591	0.806500656690369	0.998431161219273
Merged-chr16-91059541-2	chr16	91059441	91059641	+	960.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163695, intron 1 of 1)	MLT1K|LTR|ERVL-MaLR	9604.0	NM_001163695	74387.0	Mm.236220	NM_028905	ENSMUSG00000039851	4932438H23Rik	4931406G06Rik|AI550392	RIKEN cDNA 4932438H23 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36513013-4	chr18	36512900	36513100	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010415, intron 2 of 5)	intron (NM_010415, intron 2 of 5)	2805.0	NM_010415	15200.0	Mm.289681	NM_010415	ENSMUSG00000024486	Hbegf	AW047313|Dtr|Dts|Hegfl	heparin-binding EGF-like growth factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-12573434-4	chr19	12573335	12573535	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346545)	promoter-TSS (NM_001346545)	-75.0	NM_001346545	107373.0	Mm.1643	NM_026640	ENSMUSG00000024691	Fam111a	4632417K18Rik|AW413625	family with sequence similarity 111, member A	protein-coding	4.23225650415902	4.60918816212282	4.41307607088888	4.58024002430335	4.00827161623382	4.14045156018714	5.16651673971395	4.46699216516654	0.0770455227127871	0.850777064591826	0.998431161219273
Merged-chr4-151996313-4	chr4	151996214	151996414	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172705)	promoter-TSS (NM_172705)	-135.0	NM_172705	230936.0	Mm.25582	NM_172705	ENSMUSG00000047777	Phf13	BC029632|Phf5|SPOC1	PHD finger protein 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-47287679-4	chr4	47287580	47287780	+	937.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009928, intron 22 of 39)	intron (NM_009928, intron 22 of 39)	-65542.0	NM_001312868	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-16014-1	chr4	15914	16114	+	1000.0	f1_c57bl6.idr	Intergenic	Intergenic	-3156069.0	NM_001167534	100312470.0	Mm.480297	NM_001167534	ENSMUSG00000115072	Vmn1r2	Gm11776	vomeronasal 1 receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-60741233-2	chr13	60741133	60741333	+	573.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 19 of 26)	MTC|LTR|ERVL-MaLR	45131.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-83740694-3	chr18	83740603	83740803	+	943.133301	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	345859.0	NM_001081300	110796.0	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-83090663-2	chr8	83090590	83090790	+	893.083374	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177378, exon 7 of 7)	3' UTR (NM_177378, exon 7 of 7)	-74662.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	1.82597587298612	2.36329335187403	1.04081529298735	1.83984297238519	1.55660119009922	1.05695597247951	1.40628172786393	1.03242946095663	-2.17588613322093	0.0941345486935809	0.475481187998421
Merged-chr8-92998816-4	chr8	92998711	92998911	+	792.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009209, exon 14 of 14)	3' UTR (NM_009209, exon 14 of 14)	37764.0	NM_009209	20538.0	Mm.57040	NM_009209	ENSMUSG00000055368	Slc6a2	NE-T|NET|Slc6a5	solute carrier family 6 (neurotransmitter transporter, noradrenalin), member 2	protein-coding	4.98450032446797	4.18145679954076	5.03659174233129	4.57855531645422	4.06117803052328	3.8872414950543	4.7313570579155	4.08212998832819	-0.651728554271393	0.108049816409018	0.514301122960352
Merged-chr15-99816221-2	chr15	99816121	99816321	+	749.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113545, intron 4 of 10)	B3|SINE|B2	3928.0	NM_023063	65970.0	Mm.33207	NM_023063	ENSMUSG00000023022	Lima1	Eplin	LIM domain and actin binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100624026-4	chr11	100623910	100624110	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028024, intron 1 of 3)	intron (NM_028024, intron 1 of 3)	1055.0	NM_028024	71966.0	Mm.274734	NM_028024	ENSMUSG00000017837	Nkiras2	2410003M04Rik|4930527H08Rik|D630018G21Rik|KBRAS2	NFKB inhibitor interacting Ras-like protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19512619-2	chr7	19512519	19512719	+	712.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_138584, intron 1 of 3)	intron (NR_138584, intron 1 of 3)	3949.0	NM_025960	67091.0	Mm.44213	NM_025960	ENSMUSG00000002043	Trappc6a	1810073E21Rik|4930519D19Rik|AI480686|TRS33|mhyp	trafficking protein particle complex 6A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-83086696-1	chr8	83086596	83086796	+	548.0	f1_balb.idr	3' UTR (NM_177378, exon 7 of 7)	3' UTR (NM_177378, exon 7 of 7)	-78656.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	0.407454182729655	0.163916757201211	0.715485964508991	0.153622406466567	0.522636466343359	0.165227316445546	0.726554161344166	0.154405364014231	0.230075093625936	0.908680020857831	1
Merged-chr4-59864086-4	chr4	59863994	59864194	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172468, intron 2 of 8)	intron (NM_172468, intron 2 of 8)	50962.0	NM_021053	30936.0	Mm.284433	NM_021053	ENSMUSG00000028386	Slc46a2	5430429N04Rik|Ly110|TSO-1C12|Tscot	solute carrier family 46, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-96803264-4	chr5	96803160	96803360	+	954.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013470, intron 2 of 12)	intron (NM_013470, intron 2 of 12)	9875.0	NM_013470	11745.0	Mm.7214	NM_013470	ENSMUSG00000029484	Anxa3	Anx3	annexin A3	protein-coding	3.90327680570874	5.24631188185167	5.19279922852933	4.99956738962339	4.46322029153946	5.72461064772898	3.89940978844091	5.3241493626807	0.123527454152758	0.778966753658891	0.998431161219273
Merged-chr12-110682961-3	chr12	110682833	110683033	+	835.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025488)	promoter-TSS (NM_025488)	-314.0	NM_025488	66323.0	Mm.273316	NM_025488	ENSMUSG00000056508	1700001K19Rik	-	RIKEN cDNA 1700001K19 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-108834480-4	chr6	108834379	108834579	+	846.224976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138677, intron 1 of 11)	intron (NM_138677, intron 1 of 11)	5838.0	NM_138677	192193.0	Mm.21596	NM_138677	ENSMUSG00000030104	Edem1	A130059K23Rik|EDEM|mKIAA0212	ER degradation enhancer, mannosidase alpha-like 1	protein-coding	1.73334084501232	1.63072802578273	1.39733631927935	1.93910993704371	1.74706688379438	1.64154765821609	1.88936714312026	2.46109504327475	0.859323791879673	0.394841737683621	0.882837719236596
Merged-chr13-34044137-4	chr13	34044032	34044232	+	953.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026512, intron 1 of 6)	MTD|LTR|ERVL-MaLR	6491.0	NM_026512	68021.0	Mm.140243	NM_026512	ENSMUSG00000038286	Bphl	2010012D11Rik|5730533B08Rik|AI115341	biphenyl hydrolase-like (serine hydrolase, breast epithelial mucin-associated antigen)	protein-coding	2.29470135989161	3.3294104076898	3.05384496315269	2.87656145447685	1.83897667451523	3.74979389029367	2.37531820900665	1.94054670765407	-0.344918941168224	0.670016025088072	0.99359666617512
Merged-chr8-126759913-3	chr8	126759834	126760034	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-89086.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	1.83957201528868	1.08275498808215	1.89566963776962	1.94463424493904	2.02920221718713	2.09656258491183	1.29789593053823	1.04861354909505	-0.0888461324197884	0.940485661725258	0.998431161219273
Merged-chr11-106461356-4	chr11	106461246	106461446	+	999.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023913, intron 1 of 21)	(CA)n|Simple_repeat|Simple_repeat	26450.0	NM_023913	78943.0	Mm.340943	NM_023913	ENSMUSG00000020715	Ern1	9030414B18Rik|AI225830|C85377|Ire1a|Ire1alpha|Ire1p	endoplasmic reticulum (ER) to nucleus signalling 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-30582713-1	chr14	30582613	30582813	+	619.0	f1_c57bl6.idr	Intergenic	Intergenic	10564.0	NR_037237	100526475.0		NR_037237	ENSMUSG00000093156	Mir3076	mir-3076|mmu-mir-3076	microRNA 3076	ncRNA	-0.990650380700351	-0.904651015833861	-1.24251755869974	-1.25106517403754	-1.25878969348514	-1.22985680599037	-1.24016191879605	-1.2495351549788	-2.40917549759668	0.466501539218365	1
Merged-chr2-59240174-4	chr2	59240063	59240263	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 2 of 20)	intron (NM_175464, intron 2 of 20)	79313.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96409543-2	chr3	96409491	96409691	+	877.791626	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	5242.0	NR_001579	21748.0		NR_001579	ENSMUSG00000064796	Terc	mTER|mTR	telomerase RNA component	ncRNA	0.522529300442319	0.258156845854529	0.250564756262996	0.244671952456739	0.529810405941858	0.919469713330623	0.252243591879878	1.0992820622057	2.84782596778258	0.143900854090177	1
Merged-chr1-95315717-3	chr1	95315610	95315810	+	681.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026321, intron 1 of 2)	MER113|DNA|hAT-Charlie	2082.0	NM_026321	67698.0	Mm.272705	NM_026321	ENSMUSG00000051185	Fam174a	2310044D20Rik|Fam174|Naa6|Tmem157	family with sequence similarity 174, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-85960463-3	chr1	85960351	85960551	+	861.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033290, intron 1 of 1)	MIRc|SINE|MIR	604.0	NM_001033290	227326.0	Mm.244158	NM_001033290	ENSMUSG00000049608	Gpr55	CTFL|Gm218|Lpir1	G protein-coupled receptor 55	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-76178642-2	chr14	76178542	76178742	+	795.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	67751.0	NM_013745	27275.0	Mm.21138	NM_013745	ENSMUSG00000022009	Nufip1	Nufip	nuclear fragile X mental retardation protein interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-60734800-1	chr18	60734700	60734900	+	645.0	f1_c57bl6.idr	intron (NM_001348146, intron 1 of 6)	intron (NM_001348146, intron 1 of 6)	-1659.0	NM_001348102	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-83564409-3	chr9	83564307	83564507	+	954.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172507, intron 1 of 3)	intron (NM_172507, intron 1 of 3)	16069.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	1.02806649148737	1.50526669316368	1.10290468744995	1.07539260907804	1.19894276002863	2.0115834305902	2.10829749564229	1.08024917870992	1.74408251558739	0.150811288218634	0.602742783493395
Merged-chr8-13163976-4	chr8	13163887	13164087	+	767.895813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010684, intron 1 of 8)	MTC|LTR|ERVL-MaLR	4826.0	NM_010684	16783.0	Mm.16716	NM_010684	ENSMUSG00000031447	Lamp1	CD107a|LGP-120|LGP-A|Lamp-1|P2B|Perk	lysosomal-associated membrane protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-49308476-4	chr13	49308342	49308542	+	907.4874880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015759, intron 1 of 17)	intron (NM_015759, intron 1 of 17)	766.0	NM_015759	30938.0	Mm.291089	NM_015759	ENSMUSG00000037946	Fgd3	5830461L01Rik|ZFYVE5	FYVE, RhoGEF and PH domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-37242759-4	chr12	37242680	37242880	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178767, intron 1 of 12)	intron (NM_178767, intron 1 of 12)	1141.0	NM_178767	319660.0	Mm.485540	NM_178767	ENSMUSG00000050103	Agmo	A530016O06Rik|AI790538|Tmem195	alkylglycerol monooxygenase	protein-coding	4.71907056416527	4.86450938173782	5.40456961338763	3.45823862215173	5.11086698137804	4.89705778204991	5.10453960546136	4.31119553022551	0.146600616756045	0.72842891037522	0.998431161219273
Merged-chr13-103919423-4	chr13	103919309	103919509	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005868, intron 1 of 26)	intron (NM_001005868, intron 1 of 26)	1177.0	NM_001289473	59079.0	Mm.277354	NM_021563	ENSMUSG00000021709	Erbin	1700028E05Rik|Erbb2ip|mKIAA1225	Erbb2 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33185051-4	chr16	33184950	33185150	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_176840)	promoter-TSS (NM_176840)	-21.0	NM_176840	106326.0	Mm.486405	NM_176840	ENSMUSG00000022807	Osbpl11	9430097N02Rik|AI132306|AU019795|ORP-11	oxysterol binding protein-like 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70523167-4	chr8	70523054	70523254	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029366)	promoter-TSS (NM_029366)	26.0	NM_029366	75620.0	Mm.482129	NM_029366	ENSMUSG00000055553	Kxd1	0610030B01Rik|2810422J05Rik|C78305	KxDL motif containing 1	protein-coding	5.52829621734671	3.99579837806403	6.00448688542634	5.30295295859881	6.01887143666643	5.00287472382669	5.55738984561449	6.02319511615388	0.375124299278286	0.312046072960948	0.81366171762941
Merged-chr19-42461728-2	chr19	42461628	42461828	+	593.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29940.0	NM_001356589	72832.0	Mm.313558	NM_145123	ENSMUSG00000042401	Crtac1	2810454P21Rik|AW047536|Crtac1B|Lotus	cartilage acidic protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-57504892-4	chr16	57504796	57504996	+	974.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	-44346.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44767809-4	chr9	44767688	44767888	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145985)	promoter-TSS (NM_145985)	20.0	NM_145985	213827.0	Mm.371682	NM_145985	ENSMUSG00000032096	Arcn1	4632432M07Rik|nur17	archain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-69080577-3	chr8	69080517	69080717	+	880.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153054, intron 1 of 16)	L1MB2|LINE|L1	-8119.0	NM_007509	11966.0	Mm.249096	NM_007509	ENSMUSG00000006273	Atp6v1b2	AI194269|AI790362|Atp6b2|HO57|R74844	ATPase, H+ transporting, lysosomal V1 subunit B2	protein-coding	0.721342475227936	0.769280048675991	1.86020100636399	1.62029361760766	0.91285262334116	1.21435939880956	0.757327836703613	1.80877392908049	-0.354532238837986	0.808866471199699	0.998431161219273
Merged-chr5-99332272-2	chr5	99332172	99332372	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-79345.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-152285705-2	chr4	152285605	152285805	+	911.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_008237)	TTS (NM_008237)	5957.0	NM_008237	15207.0	Mm.3516	NM_008237	ENSMUSG00000028946	Hes3	Hes-3|bHLHb43	hes family bHLH transcription factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114670247-2	chr11	114670147	114670347	+	874.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001048058, intron 2 of 3)	B1_Mm|SINE|Alu	1466.0	NM_001048058	67671.0	Mm.238817	NM_023372	ENSMUSG00000057322	Rpl38	0610025G13Rik|Rbt|Ts|Tss	ribosomal protein L38	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-102350805-4	chr15	102350705	102350905	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153416)	promoter-TSS (NM_153416)	-22.0	NR_155425	102640093.0	Mm.385825	NR_155425	ENSMUSG00000116402	Gm36246	-	predicted gene, 36246	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107625380-1	chr9	107625280	107625480	+	816.0	f1_c57bl6.idr	intron (NM_008138, intron 1 of 8)	intron (NM_008138, intron 1 of 8)	9962.0	NM_008138	14678.0	Mm.196464	NM_008138	ENSMUSG00000032562	Gnai2	C76432|Galphai2|Gia|Gnai-2	guanine nucleotide binding protein (G protein), alpha inhibiting 2	protein-coding	2.95910172708269	1.96611594797559	2.99216699726856	2.82842738511533	2.21393478274011	1.9806463533813	1.41914887664941	3.13254367858206	-0.774158550314274	0.379195391197059	0.871744368943447
Merged-chr8-46070328-3	chr8	46070227	46070427	+	660.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207213, intron 5 of 17)	B1_Mus2|SINE|Alu	53819.0	NM_207213	102141.0	Mm.267258	NM_207213	ENSMUSG00000038291	Snx25	AI661919|Gm1699|Gm173|Sbbi31	sorting nexin 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128073179-2	chr2	128073078	128073278	+	718.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028765, intron 14 of 17)	intron (NM_028765, intron 14 of 17)	-52860.0	NM_207681	12125.0	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	1.5703337049966	2.36128374341442	0.92800843571335	2.42230847501594	1.28980585444017	2.07468103480589	0.933638451455576	0.911448039553197	-1.53508898975	0.228351429375321	0.721861600842291
Merged-chr3-52088105-2	chr3	52088005	52088205	+	722.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	16901.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-111996609-4	chr10	111996512	111996712	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028608, intron 1 of 5)	intron (NM_028608, intron 1 of 5)	652.0	NM_028608	73690.0	Mm.173790	NM_028608	ENSMUSG00000056888	Glipr1	2410114O14Rik|RTVP-1|RTVP1|mRTVP-1	GLI pathogenesis-related 1 (glioma)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-9899598-4	chr19	9899497	9899697	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016692)	promoter-TSS (NM_016692)	-64.0	NM_016692	16319.0	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165819701-4	chr2	165819598	165819798	+	944.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027230, intron 13 of 23)	intron (NM_027230, intron 13 of 23)	38475.0	NM_001252585	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-4731077-3	chr15	4730971	4731171	+	814.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016704, intron 1 of 15)	Lx7|LINE|L1	3861.0	NM_016704	12274.0	Mm.20247	NM_016704	ENSMUSG00000022181	C6	AW111623	complement component 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-97247348-4	chr15	97247201	97247401	+	915.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164563)	promoter-TSS (NM_001164563)	-14.0	NM_001164602	105827.0	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-68279071-2	chr10	68278964	68279164	+	685.833374	f0_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023598)	promoter-TSS (NM_023598)	-338.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	4.0191635875889	3.95688431548121	3.82818278703108	4.08897077333545	2.74476666881708	2.0120514360757	3.65615627040753	1.57022764303693	-1.89935319272075	0.0044834495118076	0.0615004884634157
Merged-chr2-73572610-4	chr2	73572511	73572711	+	882.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007389, intron 4 of 8)	intron (NM_007389, intron 4 of 8)	7727.0	NM_007389	11435.0	Mm.4583	NM_007389	ENSMUSG00000027107	Chrna1	AI385656|AI608266|Achr-1|Acra	cholinergic receptor, nicotinic, alpha polypeptide 1 (muscle)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-3278715-3	chr8	3278638	3278838	+	784.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001330056, intron 1 of 21)	intron (NM_001330056, intron 1 of 21)	879.0	NM_010568	16337.0	Mm.268003	NM_010568	ENSMUSG00000005534	Insr	4932439J01Rik|CD220|D630014A15Rik|IR|IR-A|IR-B	insulin receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-156726591-2	chr2	156726491	156726691	+	800.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001042487, intron 1 of 6)	intron (NM_001042487, intron 1 of 6)	5312.0	NM_001042487	228836.0	Mm.22094	NM_146128	ENSMUSG00000061689	Dlgap4	AI225853|BC024558|DAP-4|DAP4|SAPAP-4|Sapap4|WBP16	DLG associated protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-103119364-4	chr4	103119268	103119468	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039081)	promoter-TSS (NM_001039081)	-22.0	NM_001039081	71148.0	Mm.288721	NM_027696	ENSMUSG00000028522	Mier1	4933425I22Rik|5830411K19Rik|er1	MEIR1 treanscription regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30000797-3	chr7	30000684	30000884	+	922.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167873, intron 6 of 9)	intron (NM_001167873, intron 6 of 9)	16829.0	NM_001167872	243905.0	Mm.322432	NM_001033355	ENSMUSG00000074221	Zfp568	C80731|Gm1691|Znf568|chato	zinc finger protein 568	protein-coding	0.445221247980123	0.214046210745107	0.208687945673699	0.702874018041473	0.451560556135105	0.215257189154959	0.64285625482477	0.491894926551522	0.322806330055394	0.862492473008788	1
Merged-chr3-96305151-4	chr3	96305037	96305237	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11A|LTR|ERVK	-11168.0	NM_010186	14129.0	Mm.150	NM_010186	ENSMUSG00000015947	Fcgr1	AI323638|AV092959|CD64|FcgammaRI|IGGHAFC	Fc receptor, IgG, high affinity I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85365635-2	chr12	85365535	85365735	+	841.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026775, intron 1 of 4)	intron (NM_026775, intron 1 of 4)	9082.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-112296773-2	chr5	112296673	112296873	+	751.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001326590, intron 1 of 5)	intron (NM_001326590, intron 1 of 5)	20082.0	NM_009419	22022.0	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19712680-3	chr7	19712602	19712802	+	768.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109748, intron 3 of 8)	B1_Mm|SINE|Alu	2727.0	NM_001109748	53333.0	Mm.61682	NM_016871	ENSMUSG00000002984	Tomm40	AW539759|Mom35|Tom40	translocase of outer mitochondrial membrane 40	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-60735945-2	chr13	60735845	60736045	+	768.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 17 of 26)	intron (NM_134062, intron 17 of 26)	50419.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-74704023-4	chr14	74703888	74704088	+	947.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172812, intron 2 of 2)	intron (NM_172812, intron 2 of 2)	-28309.0	NM_001285423	13885.0	Mm.38055	NM_016903	ENSMUSG00000021996	Esd	Es-10|Es10|FGH|sid478	esterase D/formylglutathione hydrolase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106388099-4	chr11	106388001	106388201	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5320.0	NM_010494	15896.0	Mm.394	NM_010494	ENSMUSG00000001029	Icam2	CD102|Icam-2|Ly-60	intercellular adhesion molecule 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-120198150-3	chr6	120198069	120198269	+	854.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347432, intron 2 of 3)	intron (NM_001347432, intron 2 of 3)	4346.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-78850762-2	chr14	78850662	78850862	+	657.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027906, intron 1 of 44)	intron (NM_027906, intron 1 of 44)	1584.0	NM_173758	219189.0	Mm.159651	NM_027906	ENSMUSG00000058997	Vwa8	1300010F03Rik|4932416F07Rik|AI957255|Kiaa0564|mKIAA0564	von Willebrand factor A domain containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-51069818-2	chr14	51069718	51069918	+	942.958374	f1_balb.idr|f1_c57bl6.idr	TTS (NM_207558)	TTS (NM_207558)	1624.0	NM_207558	404319.0	Mm.377276	NM_207558	ENSMUSG00000035932	Olfr750	GA_x5J8B7W5WBF-6267395-6266441|GA_x6K02T2PMLR-6808276-6807281|MOR103-18	olfactory receptor 750	protein-coding	0.213969017006974	-0.0270684626633698	-0.0319471484118	0.656506084866428	0.220366969895049	-0.025967091112515	-0.0308721327759401	0.261042928574035	-1.00543399851032	0.637824434910351	1
Merged-chr6-83392108-2	chr6	83392008	83392208	+	610.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347313, intron 4 of 11)	MIRb|SINE|MIR	8994.0	NR_105793	102465194.0		NR_105793	ENSMUSG00000099045	Mir6374	Gm27292|mmu-mir-6374	microRNA 6374	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-28777078-4	chr19	28776969	28777169	+	880.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58097.0	NM_009199	20510.0	Mm.246670	NM_009199	ENSMUSG00000024935	Slc1a1	D130048G10Rik|EAAC1|EAAC2|EAAT3|MEAAC1	solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-31561886-2	chr15	31561786	31561986	+	837.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F1|LTR|ERVL-MaLR	-6947.0	NM_181588	69574.0	Mm.28108	NM_181588	ENSMUSG00000022235	Cmbl	2310016A09Rik	carboxymethylenebutenolidase-like (Pseudomonas)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34931941-3	chr17	34931771	34931971	+	976.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010893, intron 1 of 5)	intron (NM_010893, intron 1 of 5)	618.0	NM_010893	18010.0	Mm.8856	NM_010893	ENSMUSG00000007038	Neu1	AA407268|AA407316|Aglp|Apl|Bat-7|Bat7|G9|Map-2|Neu|Neu-1	neuraminidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-58183785-4	chr11	58183666	58183866	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001135115)	promoter-TSS (NM_001135115)	-77.0	NM_001135115	631323.0	Mm.394103	NM_001135115		Gm12250	Irgb10	predicted gene 12250	protein-coding	4.56572193977969	4.89950897859218	4.34772004327515	4.28397745397986	4.66548322421119	2.95612943208109	3.3905363161455	4.25294050437953	-0.705338660979719	0.142154006430336	0.588531321308203
Merged-chr10-8995855-2	chr10	8995755	8995955	+	752.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-109785.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	-1.56355737717652	-1.81244775989375	-1.82128546162293	-1.82854501295842	-1.83962066705452	-1.81053259306168	-1.81928479966835	-1.82724555674025	-1.28500227969968	0.715751224811686	1
Merged-chr1-180327280-2	chr1	180327180	180327380	+	561.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_003623, exon 1 of 1)	non-coding (NR_003623, exon 1 of 1)	-3196.0	NM_001081175	320404.0	Mm.132535	NM_001081175	ENSMUSG00000038855	Itpkb	1110033J02Rik|E130307H12Rik	inositol 1,4,5-trisphosphate 3-kinase B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10510998-4	chr19	10510882	10511082	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025333, intron 3 of 3)	MLT1E2|LTR|ERVL-MaLR	14227.0	NM_025333	66072.0	Mm.180063	NM_025333	ENSMUSG00000024668	Sdhaf2	0610038F07Rik|AA407634|AW049997	succinate dehydrogenase complex assembly factor 2	protein-coding	5.52954520175865	4.9176409360448	4.97573796361429	5.24834866932082	4.90195359394242	4.38852372450981	4.93014397647004	5.40777139821946	-0.280002496420353	0.404676296409999	0.889684743035763
Merged-chr17-56304194-4	chr17	56304110	56304310	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001111080)	promoter-TSS (NM_001111080)	-103.0	NM_001111078	18140.0	Mm.42196	NM_010931	ENSMUSG00000001228	Uhrf1	AL022808|ICBP90|Np95|RNF106	ubiquitin-like, containing PHD and RING finger domains, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-29772180-2	chr5	29772080	29772280	+	988.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359198, intron 8 of 8)	intron (NM_001359198, intron 8 of 8)	-36244.0	NR_028426	332993.0	Mm.473746	NR_028426		Gm5129	EG332993	predicted gene 5129	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-10487612-2	chr16	10487512	10487712	+	672.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007575)	promoter-TSS (NM_007575)	-566.0	NM_007575	12265.0	Mm.249560	NM_007575	ENSMUSG00000022504	Ciita	C2ta|EG669998|Gm9475|Mhc2ta	class II transactivator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-177110814-4	chr1	177110706	177110906	+	954.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011785, intron 2 of 12)	intron (NM_011785, intron 2 of 12)	137961.0	NM_011785	23797.0	Mm.235194	NM_011785	ENSMUSG00000019699	Akt3	AI851531|D930002M15Rik|Nmf350	thymoma viral proto-oncogene 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-64190609-3	chr13	64190505	64190705	+	549.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28739.0	NM_019986	56541.0	Mm.40989	NM_019986	ENSMUSG00000021476	Habp4	4933413D03Rik|4933428J01Rik	hyaluronic acid binding protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116843540-4	chr11	116843457	116843657	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033398)	promoter-TSS (NM_033398)	42.0	NM_028865	74319.0	Mm.429312	NM_028865	ENSMUSG00000090266	Mettl23	1110005A03Rik|1500035B17Rik|4933424L15Rik	methyltransferase like 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-102320132-3	chr11	102320007	102320207	+	800.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1011.0	NM_011551	21429.0	Mm.2845	NM_011551	ENSMUSG00000020923	Ubtf	A930005G04Rik|NOR-90|Tcfubf|UBF|UBF-1|UBF1	upstream binding transcription factor, RNA polymerase I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71268779-2	chr17	71268681	71268881	+	817.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357338, intron 4 of 7)	intron (NM_001357338, intron 4 of 7)	42230.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	-0.190949719808537	0.552083585625015	-0.180827563976792	-0.184631011485097	0.0857418526815772	-0.174790324055275	-0.179740621432603	0.25162510491544	-0.341218407158593	0.88506012644283	1
Merged-chr2-156809789-2	chr2	156809689	156809889	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30218.0	NM_001291124	228839.0	Mm.315625	NM_173396	ENSMUSG00000062175	Tgif2	4921501K24|5730599O09Rik|C80753|C81206	TGFB-induced factor homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-87507880-3	chr16	87507785	87507985	+	731.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11812.0	NR_040375	414095.0	Mm.166361	NR_040375	ENSMUSG00000093606	B130034C11Rik	-	RIKEN cDNA B130034C11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-43490187-2	chr10	43490087	43490287	+	937.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_199028, intron 1 of 3)	intron (NM_199028, intron 1 of 3)	-2452.0	NM_001359601	331623.0	Mm.490388	NM_199028	ENSMUSG00000038214	Bend3	mKIAA1553	BEN domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-135889604-3	chr7	135889555	135889755	+	810.516663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-173276.0	NM_001081117	17345.0	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-73114501-2	chr9	73114391	73114591	+	638.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198609, intron 1 of 5)	B1_Mm|SINE|Alu	1022.0	NM_198609	225215.0	Mm.379366	NM_198609	ENSMUSG00000032215	Rsl24d1	2410159K22Rik	ribosomal L24 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-139476843-2	chr7	139476743	139476943	+	734.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_183144, intron 2 of 15)	intron (NM_183144, intron 2 of 15)	76349.0	NM_001355162	212111.0	Mm.28308	NM_183144	ENSMUSG00000025477	Inpp5a	-	inositol polyphosphate-5-phosphatase A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-91053405-1	chr1	91053305	91053505	+	1000.0	f0_balb.idr	promoter-TSS (NM_001310732)	promoter-TSS (NM_001310732)	-39.0	NM_001111311	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65199511-1	chr9	65199411	65199611	+	542.0	f1_balb.idr	Intergenic	(CAAA)n|Simple_repeat|Simple_repeat	-15179.0	NM_177460	214424.0	Mm.31129	NM_177460	ENSMUSG00000032392	Parp16	ARTD15|BC055447|C79952|PARP-16	poly (ADP-ribose) polymerase family, member 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-123581034-2	chr2	123580934	123581134	+	753.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-508935.0	NM_001290997	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141456951-4	chr7	141456852	141457052	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028142, intron 2 of 9)	intron (NR_028142, intron 2 of 9)	1764.0	NM_001163689	66853.0	Mm.29998	NM_025802	ENSMUSG00000025509	Pnpla2	0610039C21Rik|1110001C14Rik|Atgl|TTS-2.2	patatin-like phospholipase domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-132237382-2	chr7	132237282	132237482	+	755.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001360768, exon 8 of 8)	3' UTR (NM_001360768, exon 8 of 8)	-78282.0	NR_028578	100043682.0	Mm.482794	NR_028578	ENSMUSG00000109270	Gm10584	-	predicted gene 10584	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-96554361-3	chr7	96554188	96554388	+	987.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011858, intron 5 of 32)	intron (NM_011858, intron 5 of 32)	-212324.0	NR_046043	670727.0	Mm.421352	NR_046043	ENSMUSG00000085751	Gm15412	-	predicted gene 15412	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-83526041-2	chr14	83525941	83526141	+	704.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	549249.0	NR_153783	102635012.0	Mm.399509	NR_153783	ENSMUSG00000115043	Gm32455	-	predicted gene, 32455	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-13052219-3	chr1	13052129	13052329	+	939.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61094.0	NM_172841	240726.0	Mm.24481	NM_172841	ENSMUSG00000025938	Slco5a1	4732454B15|A630033C23Rik|AA407151	solute carrier organic anion transporter family, member 5A1	protein-coding	0.891816003984878	0.892526345153651	0.984651682822022	0.531404877874126	0.791296798090805	0.900318706536121	0.538975445448879	1.06351906202416	0.0147302506730662	0.992428887221703	1
Merged-chr11-51289799-5	chr11	51289721	51289921	+	984.2666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153393)	promoter-TSS (NM_153393)	-99.0	NM_153393	237759.0	Mm.154093	NM_153393	ENSMUSG00000063564	Col23a1	2810458L13Rik|AI429655	collagen, type XXIII, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-40400252-2	chr6	40400152	40400352	+	588.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35883.0	NM_001356375	243780.0	Mm.333006	NM_175528	ENSMUSG00000037172	E330009J07Rik	AI841796|Lchn|mKIAA1147	RIKEN cDNA E330009J07 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-144015451-2	chr5	144015351	144015551	+	620.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177682)	promoter-TSS (NM_177682)	-598.0	NM_177682	231874.0	Mm.320432	NM_177682	ENSMUSG00000029617	Ccz1	AU022870	CCZ1 vacuolar protein trafficking and biogenesis associated	protein-coding	0.984375133529474	1.63354167721974	0.532702078732044	0.522039828250282	0.995373401155618	1.65019302991119	0.535714303051244	0.523916875759919	0.040030348519971	0.980694251517816	0.998431161219273
Merged-chr18-46572185-2	chr18	46572085	46572285	+	547.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173394, intron 2 of 2)	intron (NM_173394, intron 2 of 2)	2348.0	NM_173394	225471.0	Mm.149280	NM_173394	ENSMUSG00000056130	Ticam2	B430113A10|TICAM-2|TRAM|Tirp|Trif	toll-like receptor adaptor molecule 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-144905289-4	chr4	144905196	144905396	+	981.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357274, intron 2 of 6)	intron (NM_001357274, intron 2 of 6)	12159.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-9707081-1	chr18	9706981	9707181	+	601.0	f0_balb.idr	promoter-TSS (NM_130449)	promoter-TSS (NM_130449)	-567.0	NM_130449	140792.0	Mm.218571	NM_130449	ENSMUSG00000036103	Colec12	CL-P1|SRCL|Scara4	collectin sub-family member 12	protein-coding	-0.835128873370512	-0.823932163162512	-0.828224174591318	-0.830818164501896	-0.0821615777154027	-0.821020056346289	-0.637944191009866	-0.830364851710946	3.23877031165408	0.268031429925057	1
Merged-chr3-40540820-4	chr3	40540727	40540927	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175515)	promoter-TSS (NM_175515)	60.0	NM_175515	380614.0	Mm.105309	NM_175515	ENSMUSG00000060798	Intu	9230116I04Rik|9430087H23Rik|Pdzd6|Pdzk6|mKIAA1284	inturned planar cell polarity protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-86481617-2	chr17	86481517	86481717	+	839.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011104, intron 5 of 14)	intron (NM_011104, intron 5 of 14)	-194439.0	NR_045435	72104.0	Mm.443401	NR_045435	ENSMUSG00000100738	2010106C02Rik	-	RIKEN cDNA 2010106C02 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19872375-2	chr7	19872275	19872475	+	824.583374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11076.0	NM_001033419	330483.0	Mm.260192	NM_001033419	ENSMUSG00000014686	Ceacam16	Gm769	carcinoembryonic antigen-related cell adhesion molecule 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3679941-7	chr4	3679877	3680077	+	985.761902	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 1 of 12)	intron (NM_001111096, intron 1 of 12)	1856.0	NM_010747	17096.0	Mm.317331	NM_010747	ENSMUSG00000042228	Lyn	AA407514|Hck-2|p53Lyn|p56Lyn	LYN proto-oncogene, Src family tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-139043798-4	chr4	139043688	139043888	+	905.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029857, intron 14 of 16)	L1MEd|LINE|L1	31001.0	NM_021358	15565.0	Mm.291096	NM_021358	ENSMUSG00000028747	Htr6	5-HT6	5-hydroxytryptamine (serotonin) receptor 6	protein-coding	4.16994348325521	3.44266388638257	3.10508826798582	3.89798294176069	3.17224449213371	2.97303272286288	4.5508153168528	3.42799732562085	-0.0439960067931119	0.939966308290567	0.998431161219273
Merged-chr10-82909493-4	chr10	82909385	82909585	+	809.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42859.0	NM_025499	66341.0	Mm.443284	NM_025499	ENSMUSG00000109864	Eid3	1700027M21Rik|NS4EB	EP300 interacting inhibitor of differentiation 3	protein-coding	2.20331599747799	2.11495150538238	2.97322204590064	3.05643772099476	2.99900780744459	2.13030312234776	2.99624379394609	3.34643662927052	0.530722767503429	0.477186780944223	0.927980290875356
Merged-chr2-90906784-2	chr2	90906684	90906884	+	595.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361372, intron 2 of 3)	intron (NM_001361372, intron 2 of 3)	1782.0	NM_001361372	67136.0	Mm.330394	NM_025991	ENSMUSG00000005505	Kbtbd4	2510026C23Rik	kelch repeat and BTB (POZ) domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-91543145-3	chr13	91543052	91543252	+	669.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360776, intron 3 of 15)	intron (NM_001360776, intron 3 of 15)	82055.0	NM_024186	66970.0	Mm.343095	NM_024186	ENSMUSG00000003992	Ssbp2	1500004K09Rik|2310079I02Rik|9330163K02Rik|A830008M03Rik|AU067692|AW558684|Hspc116|SSDP2	single-stranded DNA binding protein 2	protein-coding	2.00044241387411	1.11737505973268	1.09345003735024	1.90755200984592	1.82052108787125	2.37968018360191	1.34207817526265	2.30271205054927	1.14805372020499	0.314605093490777	0.816548581995027
Merged-chr7-7296762-2	chr7	7296662	7296862	+	991.083374	f1_balb.idr|f1_c57bl6.idr	exon (NM_011334, exon 3 of 13)	exon (NM_011334, exon 3 of 13)	2074.0	NM_001302386	12727.0	Mm.297883	NM_011334	ENSMUSG00000000605	Clcn4	Clc4-2|Clcn4-2|clC-4	chloride channel, voltage-sensitive 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128753618-4	chr2	128753496	128753696	+	867.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 6 of 18)	ID_B1|SINE|B4	54681.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	1.02798504521731	0.402339545207426	0.573906065118071	0.389314174860493	0.657444007810065	1.03106252367984	0.39661423081967	0.825815705042743	0.646801486958873	0.709636973961919	1
Merged-chr16-93833742-4	chr16	93833634	93833834	+	980.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045529, intron 1 of 16)	intron (NM_001045529, intron 1 of 16)	1613.0	NM_001045529	338467.0	Mm.287329	NM_001045529	ENSMUSG00000039456	Morc3	1110051N18Rik|AI452146|BF318192|D16Jhu32e|NXP2|Zcwcc3	microrchidia 3	protein-coding	0.285427528692541	0.874507828506977	1.06086341083733	0.29223699752029	0.286435922088672	0.302995283239106	0.73190632056799	0.292957748505903	-1.9139635163517	0.353772954261298	1
Merged-chr6-125385301-2	chr6	125385237	125385437	+	791.549988	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4833.0	NM_198604	213522.0	Mm.333396	NM_198604	ENSMUSG00000038167	Plekhg6	BC026778|Gm155	pleckstrin homology domain containing, family G (with RhoGef domain) member 6	protein-coding	0.308195108019697	0.192375600872769	0.187149199639284	0.578494498486551	0.625010271984635	0.193557039984452	0.496895441669059	0.584120031123881	1.17917198915426	0.53391713511684	1
Merged-chr17-76813285-1	chr17	76813185	76813385	+	611.0	f1_balb.idr	Intergenic	Lx3_Mus|LINE|L1	952262.0	NR_033456	100043885.0	Mm.127562	NR_033456		Gm4710	-	predicted gene 4710	ncRNA	-0.381534712270828	-0.367743029701211	-0.372254425981719	-0.37573968752492	0.206881371801117	-0.366727000965275	0.32919362941858	-0.375130526097395	3.71399911208044	0.152111135589846	1
Merged-chr4-143412086-2	chr4	143411986	143412186	+	819.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355724)	promoter-TSS (NM_001355724)	-340.0	NM_172877	242736.0	Mm.275953	NM_172877	ENSMUSG00000046862	Pramef8	4732496O08Rik|AU023234	PRAME family member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-106892465-3	chr8	106892340	106892540	+	754.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145412, intron 1 of 3)	intron (NM_145412, intron 1 of 3)	1153.0	NM_145412	214987.0	Mm.490308	NM_145412	ENSMUSG00000046691	Chtf8	5830457O10Rik|Ctf8|Derpc	CTF8, chromosome transmission fidelity factor 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-98919236-2	chr10	98919136	98919336	+	741.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359507, intron 1 of 21)	intron (NM_001359507, intron 1 of 21)	4084.0	NM_026482	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118363866-2	chr11	118363766	118363966	+	705.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8455.0	NM_011594	21858.0	Mm.206505	NM_011594	ENSMUSG00000017466	Timp2	D11Bwg1104e|Timp-2	tissue inhibitor of metalloproteinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-55727455-4	chr13	55727337	55727537	+	999.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028281)	promoter-TSS (NM_028281)	69.0	NM_028281	72562.0	Mm.28145	NM_028281	ENSMUSG00000021496	Pcbd2	2700061N24Rik|Dcoh2|Dcohm	pterin 4 alpha carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-50513574-2	chr17	50513480	50513680	+	835.5	f0_balb.idr|f1_balb.idr	intron (NM_013880, intron 1 of 5)	intron (NM_013880, intron 1 of 5)	4033.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	-0.145515182285989	-0.131918283706408	-0.136387449807756	-0.139825786510055	0.114816968777127	0.214734906132382	0.0372096742953024	0.470861596353601	3.78706420560695	0.0800272773646434	1
Merged-chr2-166627165-2	chr2	166627065	166627265	+	917.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 5 of 39)	ORR1C2|LTR|ERVL-MaLR	62643.0	NR_152154	433503.0	Mm.491336	NR_152154		Gm29679	-	predicted gene, 29679	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-62159206-4	chr3	62159121	62159321	+	807.483337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	-179556.0	NM_001081295	622434.0	Mm.153974	NM_001081295	ENSMUSG00000036885	Arhgef26	4631416L12Rik|8430436L14Rik|AI303572|AW491953|SGEF	Rho guanine nucleotide exchange factor (GEF) 26	protein-coding	-0.792998761647641	-0.777505919786429	-0.782432012239085	-0.786329388588684	-0.791990200531773	-0.776365404355073	0.250891359300201	-0.785642225977318	4.16170718474364	0.108167267363163	1
Merged-chr11-116406321-3	chr11	116406207	116406407	+	776.5888669999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027258, intron 1 of 18)	L1MB7|LINE|L1	6725.0	NM_027258	217340.0	Mm.426344	NM_027258	ENSMUSG00000052949	Rnf157	2610036E23Rik|A130073L17Rik|mKIAA1917	ring finger protein 157	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-36006456-4	chr19	36006368	36006568	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360298, intron 1 of 2)	MER54A|LTR|ERVL	50892.0	NM_001360318	15566.0	Mm.254266	NM_008315	ENSMUSG00000024798	Htr7	5-HT-X|5-HT7	5-hydroxytryptamine (serotonin) receptor 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-80794592-2	chr12	80794492	80794692	+	909.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001242419, intron 1 of 6)	B1_Mus1|SINE|Alu	4060.0	NM_001242419	217684.0	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-57397760-3	chr14	57397647	57397847	+	820.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030004, intron 1 of 7)	intron (NM_030004, intron 1 of 7)	736.0	NM_030004	68631.0	Mm.25539	NM_030004	ENSMUSG00000021947	Cryl1	1110025H08Rik|A230106J09Rik|C85932|gul3dh	crystallin, lambda 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-74216098-4	chr18	74215999	74216199	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028868)	promoter-TSS (NM_028868)	-113.0	NM_028868	74322.0	Mm.17537	NM_028868	ENSMUSG00000024560	Cxxc1	2410002I16Rik|5830420C16Rik|AI426635|Cfp1|Cgbp|PHF18	CXXC finger 1 (PHD domain)	protein-coding	7.47828040309962	7.6874153800152	7.29660093952546	7.6988505096023	7.53673047575539	7.74085642377669	7.42289725970902	7.54453632800701	0.0159530017622162	0.915822532621523	0.998431161219273
Merged-chr7-133046751-4	chr7	133046647	133046847	+	887.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009980, intron 2 of 10)	intron (NM_009980, intron 2 of 10)	-31500.0	NM_001170744	13017.0	Mm.246240	NM_009980	ENSMUSG00000030970	Ctbp2	AA407280|D7Ertd45e|Gtrgeo6|Ribeye	C-terminal binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-63967648-6	chr5	63967504	63967704	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145923, intron 1 of 6)	intron (NM_145923, intron 1 of 6)	1293.0	NM_145923	100532.0	Mm.243632	NM_145923	ENSMUSG00000047881	Rell1	AA536743	RELT-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-41756652-3	chr4	41756566	41756766	+	686.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_155499)	promoter-TSS (NR_155499)	456.0	NM_001302511	14430.0	Mm.439669	NM_016658	ENSMUSG00000036073	Galt	AW553376	galactose-1-phosphate uridyl transferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3381465-2	chr19	3381365	3381565	+	945.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013495, intron 16 of 18)	intron (NM_013495, intron 16 of 18)	-7392.0	NM_001039658	17771.0	Mm.209941	NM_010841	ENSMUSG00000024905	Tesmin	Mtl5	testis expressed metallothionein like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16149406-3	chr7	16149304	16149504	+	800.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347561, intron 4 of 8)	intron (NM_001347561, intron 4 of 8)	19578.0	NM_148946	110891.0	Mm.241147	NM_148946	ENSMUSG00000030376	Slc8a2	Ncx2	solute carrier family 8 (sodium/calcium exchanger), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83965341-3	chr6	83965227	83965427	+	737.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355286, intron 16 of 26)	intron (NM_001355286, intron 16 of 26)	-43271.0	NM_001077694	26903.0	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-4401314-3	chr2	4401234	4401434	+	693.277771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001177843, exon 1 of 24)	5' UTR (NM_001177843, exon 1 of 24)	358.0	NM_001177843	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-138209703-3	chr5	138209602	138209802	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C-int|LTR|ERVK	15388.0	NM_177878	330216.0	Mm.19719	NM_177878	ENSMUSG00000049285	Mblac1	-	metallo-beta-lactamase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-124624780-2	chr2	124624680	124624880	+	847.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291000, intron 1 of 18)	intron (NM_001291000, intron 1 of 18)	14484.0	NM_172537	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-165189027-4	chr1	165188974	165189174	+	684.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151711, intron 1 of 6)	intron (NR_151711, intron 1 of 6)	5359.0	NM_145512	108735.0	Mm.288369	NM_145512	ENSMUSG00000040848	Sft2d2	2010005O13Rik|AI506168|AW561909|cI-45	SFT2 domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-23694911-2	chr13	23694820	23695020	+	584.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010377)	promoter-TSS (NM_010377)	-891.0	NM_010377	107970.0	Mm.8048	NM_010377	ENSMUSG00000036211	Hist1h1t	H1.6|H1ft|H1t	histone cluster 1, H1t	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-13093942-1	chr6	13093842	13094042	+	624.0	f1_balb.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	24183.0	NM_027992	71900.0	Mm.27742	NM_027992	ENSMUSG00000029571	Tmem106b	2310036D22Rik|5830455K21Rik|6430519M21Rik|AI428776|AI661344	transmembrane protein 106B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-15542589-1	chr4	15542489	15542689	+	658.0	f1_c57bl6.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	276769.0	NM_181401	100201.0	Mm.394111	NM_181401	ENSMUSG00000043252	Tmem64	9630015D15Rik|AI790744|AV300874	transmembrane protein 64	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-41976951-2	chr7	41976851	41977051	+	621.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	82030.0	NM_001105056	628444.0	Mm.469901	NM_001105056	ENSMUSG00000092032	Vmn2r59	EG628444	vomeronasal 2, receptor 59	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-45393279-2	chr13	45393136	45393336	+	673.0	f0_balb.idr|f1_balb.idr	intron (NM_153789, intron 2 of 6)	intron (NM_153789, intron 2 of 6)	3494.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	1.01205828378869	1.0868223103547	0.43580800433876	0.429317952507965	0.827059913733653	0.446061345420899	1.1518152783869	0.430453736873711	-0.142977126492108	0.936549342682998	1
Merged-chr4-103110152-4	chr4	103110067	103110267	+	794.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146254, intron 1 of 16)	ID_B1|SINE|B4	4132.0	NM_146254	242584.0	Mm.374877	NM_146254	ENSMUSG00000035126	Wdr78	BC028975	WD repeat domain 78	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-32204931-4	chr18	32204821	32205021	+	829.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011946, intron 7 of 16)	intron (NM_011946, intron 7 of 16)	-35410.0	NM_133658	13872.0	Mm.282335	NM_133658	ENSMUSG00000024382	Ercc3	BTF2 p89|Ercc-3|XPB	excision repair cross-complementing rodent repair deficiency, complementation group 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-118811290-4	chr10	118811193	118811393	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57610.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-65698392-6	chr5	65698347	65698547	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081321)	promoter-TSS (NM_001081321)	-591.0	NM_001081321	71521.0	Mm.278974	NM_027818	ENSMUSG00000029202	Pds5a	9030416H16Rik|E230024D05Rik|mKIAA0648	PDS5 cohesin associated factor A	protein-coding	2.52628923010933	2.61735635016763	1.92645426338902	2.04967918844803	3.35122569497725	2.85787014226892	1.94110382454548	2.46912365192019	0.934063111749215	0.251547664666777	0.749698831323701
Merged-chr1-191071700-4	chr1	191071576	191071776	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198654, intron 4 of 5)	intron (NM_198654, intron 4 of 5)	8655.0	NM_198654	381318.0	Mm.32504	NM_198654	ENSMUSG00000062510	Nsl1	4833432M17Rik|AI451597|Gm105|Gm984	NSL1, MIS12 kinetochore complex component	protein-coding	3.91244171570447	3.63920468514879	3.91842408779169	3.49989916102417	3.9438968392959	3.93042654563881	5.20943819762566	3.33123459110384	0.740352413143494	0.15922134278223	0.618391829904723
Merged-chr17-29045207-3	chr17	29045122	29045322	+	855.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12562.0	NR_036613	20383.0	Mm.6787	NM_013663	ENSMUSG00000071172	Srsf3	AL024116|Sfrs3|X16	serine/arginine-rich splicing factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55792655-2	chr19	55792555	55792755	+	780.75	f0_balb.idr|f0_c57.idr	intron (NM_001331146, intron 4 of 14)	intron (NM_001331146, intron 4 of 14)	50845.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-108444813-2	chr3	108444718	108444918	+	948.75	f0_balb.idr|f0_c57.idr	intron (NM_011319, intron 1 of 11)	CpG	441.0	NM_011319	20226.0	Mm.28688	NM_011319	ENSMUSG00000068739	Sars	Sars1|Strs|serRS	seryl-aminoacyl-tRNA synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150073936-2	chr4	150073836	150074036	+	715.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	5482.0	NR_029751	723848.0		NR_029751	ENSMUSG00000065493	Mir34a	Mirn34a|mir-34a|mmu-mir-34a	microRNA 34a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125096080-4	chr6	125095954	125096154	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145979)	promoter-TSS (NM_145979)	73.0	NM_001346610	107932.0	Mm.333388	NM_145979	ENSMUSG00000063870	Chd4	9530019N15Rik|AA617397|BC005710|D6Ertd380e|Mi-2beta|mKIAA4075	chromodomain helicase DNA binding protein 4	protein-coding	-1.18378942727406	-1.15669478905697	-0.457913181653105	-1.17806440097404	-1.18323730008524	-1.15415234459186	-1.16577117532349	-1.17633933179771	-2.81844548480871	0.412768592413622	1
Merged-chr10-80927751-5	chr10	80927658	80927858	+	728.200012	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-2333.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-110716734-2	chr12	110716634	110716834	+	651.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-20339.0	NM_010480	15519.0	Mm.1843	NM_010480	ENSMUSG00000021270	Hsp90aa1	86kDa|89kDa|AL024080|AL024147|Hsp86-1|Hsp89|Hsp90|Hspca|hsp4	heat shock protein 90, alpha (cytosolic), class A member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152534348-1	chr1	152534248	152534448	+	551.0	f1_c57bl6.idr	intron (NM_016846, intron 12 of 17)	intron (NM_016846, intron 12 of 17)	90869.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-51832291-3	chr17	51832159	51832359	+	871.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163632, intron 1 of 10)	CpG	388.0	NM_009122	20230.0	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-126655274-4	chr3	126655171	126655371	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025438, intron 2 of 18)	intron (NM_001025438, intron 2 of 18)	58320.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	2.22631634385295	3.33632261038734	3.70032783323104	3.53426850897713	3.73091307476117	2.87872854668646	3.79205820733209	3.14814075918098	0.224899905735092	0.71842961634446	0.998431161219273
Merged-chr4_GL456216_random-38951-1	chr4_GL456216_random	38851	39051	+	579.0	f0_c57.idr	Intergenic	Intergenic	23070.0	NM_001033326	236082.0	Mm.305345	NM_001033326	ENSMUSG00000063897	Dhrsx	C80877|D4Ertd296e|Dhrsxy|Pscad	dehydrogenase/reductase (SDR family) X chromosome	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-29772317-4	chr2	29772208	29772408	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10780.0	NM_001177392	433416.0	Mm.330112	NM_001034887	ENSMUSG00000075425	Gm13547	-	predicted gene 13547	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-31386141-4	chr9	31386059	31386259	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172766)	promoter-TSS (NM_172766)	-33.0	NM_172766	235134.0	Mm.238146	NM_172766	ENSMUSG00000042185	Nfrkb	A530090G11Rik	nuclear factor related to kappa B binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167589482-4	chr2	167589397	167589597	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	42508.0	NM_001311146	66589.0	Mm.278783	NM_023230	ENSMUSG00000078923	Ube2v1	0610011J09Rik|AI256840|CROC-1|CROC1|D7Bwg1382e|UEV-1	ubiquitin-conjugating enzyme E2 variant 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80386306-2	chr10	80386206	80386406	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198615, intron 1 of 1)	intron (NM_198615, intron 1 of 1)	1345.0	NM_198615	237400.0	Mm.268389	NM_198615	ENSMUSG00000048696	Mex3d	BC059858|Rkhd1	mex3 RNA binding family member D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-113648373-4	chr2	113648275	113648475	+	857.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285459, intron 13 of 16)	intron (NM_001285459, intron 13 of 16)	-36715.0	NM_001287818	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	1.50637699656029	4.3258970588589	3.19599313685482	4.47755042850413	2.7021770946782	4.68597455457909	3.3340530958988	4.37786906476566	0.277747715648489	0.811428862534826	0.998431161219273
Merged-chr15-50364117-2	chr15	50364017	50364217	+	666.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus4|LINE|L1	524932.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-53980408-4	chr11	53980221	53980421	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019723)	promoter-TSS (NM_019723)	12.0	NM_001362202	56517.0	Mm.154284	NM_019723	ENSMUSG00000063652	Slc22a21	Octn3|Slc22a9	solute carrier family 22 (organic cation transporter), member 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-111103335-4	chr10	111103248	111103448	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61454.0	NM_001003717	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-32813585-2	chr16	32813466	32813666	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-3120.0	NM_001256309	381043.0	Mm.303864	NM_001256309	ENSMUSG00000094430	Smbd1	Gm1743|Gm933	somatomedin B domain containing 1	protein-coding	2.9716819901536	3.46556265585991	1.82313632332314	2.58224296591786	2.67341235114918	2.88887754139409	2.89736681758224	2.47220189597486	-0.20120494785792	0.78835821509521	0.998431161219273
Merged-chr15-73089725-4	chr15	73089642	73089842	+	929.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053068)	promoter-TSS (NM_053068)	-670.0	NM_053068	93696.0	Mm.23095	NM_053068	ENSMUSG00000068391	Chrac1	2410152E03Rik|2810406L04Rik|YCL1	chromatin accessibility complex 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-53777947-2	chr1	53777854	53778054	+	663.0	f0_balb.idr|f1_balb.idr	intron (NM_133810, intron 1 of 7)	ORR1F|LTR|ERVL-MaLR	7261.0	NM_133810	98267.0	Mm.25559	NM_133810	ENSMUSG00000026094	Stk17b	3110009A03Rik|AI120141|Drak2	serine/threonine kinase 17b (apoptosis-inducing)	protein-coding	2.60086031631311	2.95507616252256	3.33705936517106	1.43525836474832	3.7824624535191	3.48180663082287	4.07913384243747	1.44450222666109	1.18801505717916	0.385572293453553	0.876154616828737
Merged-chr1-64367792-4	chr1	64367682	64367882	+	987.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-165022.0	NM_009952	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-44939516-3	chr13	44939408	44939608	+	806.611145	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025772, intron 7 of 9)	RLTR24|LTR|ERV1	62588.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127850316-4	chr7	127850217	127850417	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8509.0	NM_009294	20909.0	Mm.24867	NM_009294	ENSMUSG00000030805	Stx4a	Stx4|Syn-4|Syn4	syntaxin 4A (placental)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-54817641-4	chr6	54817532	54817732	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199143, intron 1 of 4)	intron (NM_199143, intron 1 of 4)	716.0	NM_199143	387524.0	Mm.286149	NM_199143	ENSMUSG00000058446	Znrf2	1190002C14Rik|AU044205|D6Ertd365e	zinc and ring finger 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118603353-2	chr9	118603253	118603453	+	686.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-3356.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-69165859-2	chr16	69165759	69165959	+	550.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	634522.0	NR_130991	78110.0	Mm.211406	NR_130991	ENSMUSG00000107073	4930428D20Rik	Gm43265	RIKEN cDNA 4930428D20 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-160066997-3	chr2	160066910	160067110	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50357.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	0.556131768544844	-0.177966472266967	-0.183401197351659	-0.187608726096849	0.570149214799136	-0.176744248994205	-0.182200734202892	-0.186872748852576	0.042017862341484	0.986649473535163	1
Merged-chr1-165661379-1	chr1	165661279	165661479	+	718.0	f0_balb.idr	intron (NM_001038846, intron 2 of 5)	intron (NM_001038846, intron 2 of 5)	-26838.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-124664211-2	chr2	124664111	124664311	+	694.666626	f1_balb.idr|f1_c57bl6.idr	exon (NM_172537, exon 17 of 17)	exon (NM_172537, exon 17 of 17)	10630.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34999236-2	chr17	34999136	34999336	+	665.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_033075, exon 2 of 2)	exon (NM_033075, exon 2 of 2)	1510.0	NM_033075	110956.0	Mm.22506	NM_033075		D17H6S56E-5	G7e	DNA segment, Chr 17, human D6S56E 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-40372522-4	chr10	40372416	40372616	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291816, intron 1 of 11)	intron (NM_001291816, intron 1 of 11)	23208.0	NM_001291816	78334.0	Mm.200924	NM_198164	ENSMUSG00000038481	Cdk19	2700084L06Rik|AI845279|AW228747|CDK11|Cdc2l6|mKIAA1028	cyclin-dependent kinase 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-57632055-4	chr10	57631980	57632180	+	943.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008863)	promoter-TSS (NM_008863)	99.0	NM_001039051	18768.0	Mm.262135	NM_008863	ENSMUSG00000019876	Pkib	Pkibeta|Prkacn2	protein kinase inhibitor beta, cAMP dependent, testis specific	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-35774508-1	chr16	35774408	35774608	+	739.0	f1_c57bl6.idr	intron (NR_152314, intron 1 of 8)	intron (NR_152314, intron 1 of 8)	4122.0	NM_175111	66667.0	Mm.45272	NM_175111	ENSMUSG00000022849	Hspbap1	3830421G21Rik	Hspb associated protein 1	protein-coding	-0.480268457480466	-0.467101752555498	0.222955013949356	-0.474733845517557	-0.479444240328687	0.0546288813157795	-0.470456509509936	-0.474152239425658	-0.549896034774043	0.840530923196334	1
Merged-chr8-46559615-2	chr8	46559515	46559715	+	792.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_027973, intron 3 of 12)	B3|SINE|B2	7546.0	NM_027973	71876.0	Mm.22108	NM_027973	ENSMUSG00000031629	Cenpu	1700029A22Rik|Mlf1ip	centromere protein U	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128444336-4	chr2	128444239	128444439	+	950.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14988.0	NR_028590	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	-0.848909596004161	-0.8385813001139	-0.670030676417376	-0.684938334285771	-0.848370288365039	-0.835888019418078	-0.84245093086906	-0.318834385137309	0.929727064967132	0.745920231574668	1
Merged-chr13-51756775-3	chr13	51756676	51756876	+	860.099976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001281880, intron 2 of 16)	intron (NM_001281880, intron 2 of 16)	36971.0	NM_001281880	20354.0	Mm.33903	NM_013660	ENSMUSG00000021451	Sema4d	CD100|Semacl2|Semaj|Semcl2|coll-4	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-32643685-2	chr11	32643585	32643785	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271349, intron 1 of 11)	intron (NM_001271349, intron 1 of 11)	1130.0	NM_001271347	103583.0	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-85162972-4	chr16	85162865	85163065	+	893.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198825, intron 1 of 15)	MTEa|LTR|ERVL-MaLR	10742.0	NM_001198825	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	3.60446351127437	2.87149599043135	3.63916869273265	3.04456148029668	3.57727058765556	2.89326343639697	3.85733740993969	3.06045926834539	0.113092844828832	0.847943630040121	0.998431161219273
Merged-chr12-16719105-2	chr12	16719040	16719240	+	767.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_015764, intron 9 of 34)	intron (NM_015764, intron 9 of 34)	38099.0	NM_001252071	268527.0	Mm.428062	NM_015764	ENSMUSG00000036523	Greb1	5730583K22Rik|9130004E13|AF180470|AU023194|mKIAA0575	gene regulated by estrogen in breast cancer protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-75547041-2	chr9	75546931	75547131	+	948.5	f0_balb.idr|f0_c57.idr	intron (NM_001357828, intron 1 of 10)	intron (NM_001357828, intron 1 of 10)	12626.0	NM_016963	50875.0	Mm.38445	NM_016963	ENSMUSG00000058587	Tmod3	U-Tmod|UTMOD	tropomodulin 3	protein-coding	0.264318537496648	0.868255970752747	0.130468885798043	0.668347874701033	0.509768627231782	0.138116654176153	0.131846991200376	0.126486113557383	-2.00539263779092	0.324982860605675	1
Merged-chr7-19634085-2	chr7	19633985	19634185	+	707.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_019649, exon 13 of 14)	exon (NM_019649, exon 13 of 14)	-4647.0	NM_009046	19698.0	Mm.1741	NM_009046	ENSMUSG00000002983	Relb	shep	avian reticuloendotheliosis viral (v-rel) oncogene related B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-15285651-2	chr9	15285551	15285751	+	697.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359258, intron 7 of 7)	B3|SINE|B2	-5784.0	NM_144933	234959.0	Mm.44151	NM_144933	ENSMUSG00000031935	Med17	77kDa|C330002H14Rik|Crsp6|Trap80	mediator complex subunit 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-17043172-4	chr10	17043087	17043287	+	835.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038020, intron 1 of 8)	intron (NR_038020, intron 1 of 8)	52595.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-50772774-4	chr15	50772662	50772862	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310485, intron 5 of 7)	intron (NM_001310485, intron 5 of 7)	116287.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	3.46074815735796	3.86975323911796	3.95421447027274	3.39293750609455	2.51979708100153	2.55359967526967	2.07296435889692	1.47567266303718	-2.58958604237496	0.000197367464853662	0.00534138686461859
Merged-chr3-19229554-2	chr3	19229454	19229654	+	869.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001122759, intron 12 of 12)	intron (NM_001122759, intron 12 of 12)	35454.0	NM_008802	18583.0	Mm.355614	NM_008802	ENSMUSG00000069094	Pde7a	AU015378|AW047537	phosphodiesterase 7A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-68732414-4	chr10	68732314	68732514	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177794, intron 1 of 5)	intron (NM_177794, intron 1 of 5)	8668.0	NM_177794	327766.0	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-54780436-3	chr14	54780345	54780545	+	767.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016972, intron 1 of 10)	intron (NM_016972, intron 1 of 10)	1441.0	NM_016972	50934.0	Mm.276831	NM_016972	ENSMUSG00000022180	Slc7a8	AA408822|LAT2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	protein-coding	2.15649144730496	1.32026539438975	2.80739665459889	2.16022458886303	1.4474468129414	2.32331713204754	2.90319388271243	2.03988374341393	0.152693189993151	0.875752083475596	0.998431161219273
Merged-chr2-19554215-4	chr2	19554087	19554287	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027600)	promoter-TSS (NM_027600)	-277.0	NM_027600	70909.0	Mm.158488	NM_027600	ENSMUSG00000026734	4921504E06Rik	4921522E24Rik	RIKEN cDNA 4921504E06 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-31602622-4	chr15	31602551	31602751	+	840.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007637)	promoter-TSS (NM_007637)	535.0	NM_001356313	68073.0	Mm.119185	NM_026546	ENSMUSG00000039065	Fam173b	A930016P21Rik|AA987072	family with sequence similarity 173, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-121327884-4	chr1	121327799	121327999	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271531)	promoter-TSS (NM_001271531)	125.0	NM_001357251	72999.0	Mm.27136	NM_133748	ENSMUSG00000003721	Insig2	2900053I11Rik|C730043J18Rik|Insig-2	insulin induced gene 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-4103559-2	chr7	4103459	4103659	+	601.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_033568, intron 3 of 8)	intron (NR_033568, intron 3 of 8)	-15971.0	NM_001109765	57776.0	Mm.29729	NM_021324	ENSMUSG00000030428	Ttyh1	4930459B04Rik|6330408P11Rik|TTY1|mTTY1|tty	tweety family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139327959-4	chr5	139327856	139328056	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-2492.0	NM_172723	231821.0	Mm.297819	NM_172723	ENSMUSG00000056413	Adap1	4930431P11Rik|Centa1|GC1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-116013876-4	chr6	116013770	116013970	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18865.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-121291700-4	chr3	121291602	121291802	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024178)	promoter-TSS (NM_024178)	-38.0	NR_155539	66789.0	Mm.269881	NM_024178	ENSMUSG00000039887	Alg14	5430428G01Rik|AI854024	asparagine-linked glycosylation 14	protein-coding	0.134841454498461	0.693034446263779	0.150407425358885	0.829456175986162	0.13629848055726	0.949486123270149	0.152064003964762	0.145607705455513	-0.474969641804542	0.821138856286766	1
Merged-chr15-59004273-4	chr15	59004173	59004373	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144800, intron 3 of 14)	intron (NM_144800, intron 3 of 14)	70463.0	NM_023172	66218.0	Mm.322294	NM_023172	ENSMUSG00000022354	Ndufb9	1190008J14Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-25023149-3	chr5	25023063	25023263	+	770.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145401, intron 2 of 15)	intron (NM_145401, intron 2 of 15)	-27410.0	NM_001310480	108099.0	Mm.33649	NM_145401	ENSMUSG00000028944	Prkag2	2410051C13Rik|AAKG|AAKG2|AI854673|H91620p|WPWS	protein kinase, AMP-activated, gamma 2 non-catalytic subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-121286073-5	chr9	121285980	121286180	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8908.0	NM_177589	209012.0	Mm.371804	NM_177589	ENSMUSG00000040936	Ulk4	4932415A06Rik|A730098P15	unc-51-like kinase 4	protein-coding	-1.18131090640469	-1.15791820863384	-1.16818967255415	-1.01995012113478	-1.04041832189799	-1.15569233955387	-1.00424741891831	-1.01742885644802	1.27405841157573	0.657736011530467	1
Merged-chr13-23422001-2	chr13	23421901	23422101	+	562.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_013924, exon 3 of 3)	exon (NM_013924, exon 3 of 3)	1865.0	NM_013924	30946.0	Mm.292094	NM_013924	ENSMUSG00000036376	Abt1	-	activator of basal transcription 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-13159571-3	chr8	13159471	13159671	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010684, intron 1 of 8)	L1MDb|LINE|L1	410.0	NM_010684	16783.0	Mm.16716	NM_010684	ENSMUSG00000031447	Lamp1	CD107a|LGP-120|LGP-A|Lamp-1|P2B|Perk	lysosomal-associated membrane protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-128763074-2	chr6	128762974	128763174	+	968.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25567.0	NM_001159904	17059.0	Mm.480764	NM_008527	ENSMUSG00000030325	Klrb1c	AI462337|CD161|Klrb1b|Ly-59|Ly55c|Ly59|NK-RP1|NK1.1|NKR-P1.9|NKRP1|NKRP140|Nk-1|Nk-1.2|Nk1|Nk1.2|Nkrp1b|Nkrp1c|ly-55c	killer cell lectin-like receptor subfamily B member 1C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-136886287-4	chr4	136886186	136886386	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009777)	promoter-TSS (NM_009777)	-109.0	NM_009777	12260.0	Mm.2570	NM_009777	ENSMUSG00000036905	C1qb	-	complement component 1, q subcomponent, beta polypeptide	protein-coding	8.25481388462653	7.75541554140607	8.31712326879923	8.17965449659311	7.74017083660404	8.08754395979402	8.06011324010784	7.48044874105028	-0.295217190816701	0.0675733131516689	0.390097867830591
Merged-chr4-43431322-2	chr4	43431222	43431422	+	617.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-2188.0	NM_001162381	329831.0	Mm.454466	NM_177377	ENSMUSG00000042788	Fam166b	4833436C18Rik	family with sequence similarity 166, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-78453890-2	chr11	78453790	78453990	+	843.583374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-11811.0	NM_026740	52466.0	Mm.131618	NM_026740	ENSMUSG00000020829	Slc46a1	1110002C08Rik|D11Ertd18e|HCP1|Pcft	solute carrier family 46, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-64928713-4	chr1	64928633	64928833	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039493, intron 2 of 7)	intron (NM_001039493, intron 2 of 7)	28091.0	NM_001039493	241075.0	Mm.239534	NM_175509	ENSMUSG00000051344	Plekhm3	9430067K14Rik|A230102O09Rik|AI449570|DAPR|Plekhm1l	pleckstrin homology domain containing, family M, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47010106-4	chr17	47010009	47010209	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146078, intron 1 of 46)	CpG	423.0	NM_146078	224826.0	Mm.28234	NM_146078	ENSMUSG00000023977	Ubr2	9930021A08Rik|AI462103|AW540746|E130209G04Rik|mKIAA0349	ubiquitin protein ligase E3 component n-recognin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-137122793-3	chr5	137122687	137122887	+	849.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6580.0	NM_201373	384309.0	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	-1.01707008444741	-0.993492043802862	-1.00764648088546	-1.01185324898415	-1.01628940292637	-0.0453400029982381	-1.00444222658639	-1.01130848519189	3.32945445846488	0.287936268400993	1
Merged-chr13-24338036-4	chr13	24337939	24338139	+	898.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001284519, intron 2 of 17)	intron (NM_001284519, intron 2 of 17)	10635.0	NM_001111110	12763.0	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-150372112-3	chr1	150372010	150372210	+	836.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_145511, exon 12 of 14)	exon (NM_145511, exon 12 of 14)	-20728.0	NM_133780	108989.0	Mm.174256	NM_133780	ENSMUSG00000006005	Tpr	2610029M07Rik|C77892	translocated promoter region, nuclear basket protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27004518-2	chr17	27004418	27004618	+	774.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-13517.0	NM_001251881	70772.0	Mm.440437	NM_027544	ENSMUSG00000048731	Ggnbp1	0610031G08Rik|mdf	gametogenetin binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-17643014-4	chr6	17642934	17643134	+	938.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007604, intron 1 of 9)	intron (NM_007604, intron 1 of 9)	6024.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-149336434-2	chr4	149336334	149336534	+	689.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_131918)	TTS (NR_131918)	1795.0	NR_131918	74310.0	Mm.440455	NR_131918	ENSMUSG00000085286	Ube4bos3	1700121F15Rik	ubiquitination factor E4B, opposite strand 3	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-24730473-2	chr5	24730373	24730573	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001081441, exon 1 of 6)	5' UTR (NM_001081441, exon 1 of 6)	207.0	NM_001081441	269633.0	Mm.392539	NM_026621	ENSMUSG00000055235	Wdr86	2810046M22Rik|BC059069	WD repeat domain 86	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-91809634-4	chr13	91809558	91809758	+	867.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1962.0	NM_145453	69085.0	Mm.52356	NM_145453	ENSMUSG00000021621	Zcchc9	1810019C21Rik	zinc finger, CCHC domain containing 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-78791668-4	chr7	78791560	78791760	+	879.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153793, intron 4 of 5)	intron (NR_153793, intron 4 of 5)	8529.0	NM_001360702	67994.0	Mm.297033	NM_026498	ENSMUSG00000030611	Mrps11	0710005I03Rik|C79873|MRP-S11|S11mt	mitochondrial ribosomal protein S11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141064746-2	chr4	141064646	141064846	+	617.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4201.0	NM_001145958	230872.0	Mm.80685	NM_172122	ENSMUSG00000040860	Crocc	-	ciliary rootlet coiled-coil, rootletin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43382050-4	chr4	43382104	43382304	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037709, intron 1 of 11)	CpG	222.0	NM_001037709	100213.0	Mm.235730	NM_199057	ENSMUSG00000035969	Rusc2	AI840675|mKIAA0375	RUN and SH3 domain containing 2	protein-coding	4.29519421543473	3.74271659400005	4.53317924492718	4.1587654065566	4.5267810825655	4.65810303464441	4.18379846736662	4.48327462272602	0.3334133755771	0.404995635464097	0.890227707166628
Merged-chr13-34076905-4	chr13	34076809	34077009	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009450, intron 1 of 3)	intron (NM_009450, intron 1 of 3)	1099.0	NM_009450	22151.0	Mm.422827	NM_009450	ENSMUSG00000058672	Tubb2a	M(beta)2|Tubb2	tubulin, beta 2A class IIA	protein-coding	3.90753967646914	2.11207457562392	3.05802200500404	4.05388070096932	3.98221682645589	3.84564766718005	3.48714601194443	3.09449062280308	0.219310412882325	0.724702280303737	0.998431161219273
Merged-chr16-38702375-2	chr16	38702275	38702475	+	625.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_020260, intron 1 of 11)	intron (NM_020260, intron 1 of 11)	10660.0	NM_020260	12549.0	Mm.370848	NM_020260	ENSMUSG00000022799	Arhgap31	5830477L08Rik|AU041750|Cdgap|D330026I07Rik	Rho GTPase activating protein 31	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-80799290-3	chr15	80799179	80799379	+	912.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177124, intron 1 of 21)	(TC)n|Simple_repeat|Simple_repeat	669.0	NM_177124	213988.0	Mm.131328	NM_144812	ENSMUSG00000047888	Tnrc6b	2700090M07Rik|A730065C02Rik|AI848765|D230019K20Rik	trinucleotide repeat containing 6b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-117710832-3	chr14	117710725	117710925	+	829.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011821, intron 4 of 8)	intron (NM_011821, intron 4 of 8)	243022.0	NR_105747	102465148.0		NR_105747	ENSMUSG00000098648	Mir6239	Gm28025|mmu-mir-6239	microRNA 6239	ncRNA	1.15712491219363	1.38864000643496	1.00379284012739	0.326582115202531	0.314859365455021	0.347482980593339	0.337053602739011	0.328015391044281	-4.59895991343862	0.0135648287330129	1
Merged-chr8-75101655-4	chr8	75101552	75101752	+	670.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7857.0	NM_001302540	17218.0	Mm.5048	NM_008566	ENSMUSG00000005410	Mcm5	AA617332|AI324988|AL033333|Cdc46|Mcmd5|P1-CDC46	minichromosome maintenance complex component 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-117900337-2	chr6	117900237	117900437	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166432)	promoter-TSS (NM_001166432)	-3.0	NM_001166432	98758.0	Mm.422979	NM_133834	ENSMUSG00000042079	Hnrnpf	4833420I20Rik|AA407306|Hnrpf	heterogeneous nuclear ribonucleoprotein F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-65351225-3	chr16	65351121	65351321	+	870.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-169408.0	NM_008849	18736.0	Mm.355440	NM_008849	ENSMUSG00000004842	Pou1f1	GHF-1|Hmp1|Pit-1|Pit1|Pit1-rs1|dw|dwarf	POU domain, class 1, transcription factor 1	protein-coding	0.00600965994580598	-0.230346478366965	-0.234329592585981	0.355522611544848	0.012160639757521	-0.229445943837425	-0.0644124460381127	-0.236855706077473	-1.20245761590016	0.600824757077298	1
Merged-chr12-102369427-10	chr12	102369251	102369451	+	921.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001161365, exon 6 of 10)	exon (NM_001161365, exon 6 of 10)	70462.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-116565731-2	chr10	116565631	116565831	+	981.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359563, intron 1 of 13)	L1M4|LINE|L1	14805.0	NM_001359250	72068.0	Mm.351553	NM_028082	ENSMUSG00000020166	Cnot2	2600016M12Rik|2810470K03Rik|AA537049|AA959607|AW557563|C79650	CCR4-NOT transcription complex, subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35302605-2	chr17	35302505	35302705	+	719.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur2|SINE|Alu	-17942.0	NM_010390	15006.0	Mm.466882	NM_010390	ENSMUSG00000079507	H2-Q1	H-2Q1|Q1|Q1b|Q1d|Q1k|Qa-1|Qa1|Qed-1	histocompatibility 2, Q region locus 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-72980935-3	chr15	72980911	72981111	+	675.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029640, intron 8 of 21)	intron (NM_029640, intron 8 of 21)	74801.0	NM_029640	76510.0	Mm.158902	NM_029640	ENSMUSG00000047921	Trappc9	1810044A24Rik|2900005P22Rik|4632408O18Rik|Ibp|Nibp|TRS130|mKIAA1882	trafficking protein particle complex 9	protein-coding	-0.989786300109673	-1.23260475256842	-1.24307021483566	-1.2516668571423	-1.25947646807559	-0.900997845241277	-1.24070106357476	-1.25012806227958	0.315345637906027	0.925948014407195	1
Merged-chr2-163750075-5	chr2	163749950	163750150	+	960.161926	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001272052, intron 1 of 11)	CpG	189.0	NM_007398	11486.0	Mm.388	NM_007398	ENSMUSG00000017697	Ada	-	adenosine deaminase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-101967389-1	chr5	101967289	101967489	+	637.0	f1_c57bl6.idr	intron (NM_172882, intron 5 of 66)	intron (NM_172882, intron 5 of 66)	102532.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	1.50350459446043	2.51311176673348	0.874135673224939	1.45568235073908	0.82920052201631	1.73610145221523	1.91812862394993	0.859164032528961	-0.851528318876773	0.520187256873479	0.947641799425091
Merged-chr15-12092321-3	chr15	12092193	12092393	+	869.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-25558.0	NM_011767	22763.0	Mm.273496	NM_011767	ENSMUSG00000022201	Zfr	C920030H05Rik	zinc finger RNA binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-25099687-4	chr8	25099596	25099796	+	993.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031257, intron 1 of 11)	intron (NM_031257, intron 1 of 11)	2115.0	NM_031257	83436.0	Mm.261122	NM_031257	ENSMUSG00000031557	Plekha2	6430512N22Rik|AI851530|AU041791|TAPP2|W91773	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-38574977-2	chr2	38574877	38575077	+	667.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021606, intron 7 of 9)	intron (NM_021606, intron 7 of 9)	63101.0	NM_001159631	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72742592-4	chr6	72742484	72742684	+	985.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001079822, intron 3 of 12)	intron (NM_001079822, intron 3 of 12)	46461.0	NM_001079822	21415.0	Mm.440067	NM_009332	ENSMUSG00000055799	Tcf7l1	Tcf-3|Tcf3|bHLHb21	transcription factor 7 like 1 (T cell specific, HMG box)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-23181766-4	chr16	23181660	23181860	+	898.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155420, intron 1 of 2)	intron (NR_155420, intron 1 of 2)	6480.0	NR_155420	105246089.0	Mm.390905	NR_155420		C730014E05Rik	-	RIKEN cDNA C730014E05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-161894298-3	chr1	161894203	161894403	+	943.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17621.0	NM_001357402	226551.0	Mm.170002	NM_172645	ENSMUSG00000040297	Suco	4732491B11|AI848100|AU016931|Opt	SUN domain containing ossification factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100855384-4	chr7	100855225	100855425	+	872.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177073, intron 1 of 10)	intron (NM_177073, intron 1 of 10)	8088.0	NM_001358914	320100.0	Mm.40336	NM_177073	ENSMUSG00000008318	Relt	E430021K24Rik|Tnfrsf19l	RELT tumor necrosis factor receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-86410980-2	chr5	86410880	86411080	+	587.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001033233, exon 9 of 9)	3' UTR (NM_001033233, exon 9 of 9)	-37593.0	NM_145561	231382.0	Mm.240139	NM_145561	ENSMUSG00000061259	Tmprss11d	AST|AsP|BC020151	transmembrane protease, serine 11d	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-84615700-4	chr10	84615603	84615803	+	898.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6734.0	NM_027423	70428.0	Mm.335007	NM_027423	ENSMUSG00000034453	Polr3b	2700078H01Rik|A330032P03Rik|C85372|RPC2	polymerase (RNA) III (DNA directed) polypeptide B	protein-coding	2.06742137862492	2.1870167464984	2.97018042291303	1.90249260968219	2.08505434356806	2.86960811262206	1.31791975338365	2.06182057466055	-0.335938905559829	0.721388084565529	0.998431161219273
Merged-chr6-29831721-2	chr6	29831621	29831821	+	866.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001171000, intron 1 of 16)	ID4|SINE|ID	-22020.0	NM_001347084	74340.0	Mm.210899	NM_021414	ENSMUSG00000029772	Ahcyl2	4631427C17Rik|AI227036|Adohcyase3|mKIAA0828	S-adenosylhomocysteine hydrolase-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-82612198-4	chr11	82612097	82612297	+	998.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21156.0	NR_033582	791422.0	Mm.341562	NR_033582	ENSMUSG00000069796	Gm11426	-	predicted gene 11426	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-92697414-4	chr16	92697326	92697526	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009821)	promoter-TSS (NM_009821)	-97.0	NM_009821	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-49609185-2	chr11	49609085	49609285	+	569.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008029)	promoter-TSS (NM_008029)	-494.0	NM_008029	14257.0	Mm.3291	NM_008029	ENSMUSG00000020357	Flt4	AI323512|Chy|Flt-4|VEGFR-3|VEGFR3	FMS-like tyrosine kinase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-17790990-2	chr6	17790890	17791090	+	645.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_022332, intron 1 of 15)	(TCCC)n|Simple_repeat|Simple_repeat	41820.0	NM_001083315	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-24392657-2	chr5	24392557	24392757	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001002897)	promoter-TSS (NM_001002897)	-514.0	NM_001002897	213948.0	Mm.332252	NM_001002897	ENSMUSG00000038295	Atg9b	Apg912|Apg9l2|Apgdc2|Gm574|Nos3as|eONE|sONE	autophagy related 9B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-33935826-2	chr5	33935726	33935926	+	722.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011914, intron 1 of 10)	intron (NM_011914, intron 1 of 10)	432.0	NM_011914	24116.0	Mm.332320	NM_011914	ENSMUSG00000029111	Nelfa	Whsc2|Whsc2h	negative elongation factor complex member A, Whsc2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-102943321-2	chr2	102943221	102943421	+	634.625	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41656.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-96334140-1	chr1	96334040	96334240	+	558.0	f1_balb.idr	Intergenic	L1Md_A|LINE|L1	-312382.0	NR_040467	73454.0	Mm.396229	NR_040467	ENSMUSG00000100062	1700063A18Rik	-	RIKEN cDNA 1700063A18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-80169591-4	chr18	80169485	80169685	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16654.0	NR_131039	105246506.0	Mm.392326	NR_131039		LOC105246506	-	uncharacterized LOC105246506	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-14252249-4	chr2	14252136	14252336	+	999.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008625, intron 4 of 29)	intron (NM_008625, intron 4 of 29)	-8767.0	NR_030609	100124488.0		NR_030609	ENSMUSG00000077897	Mir511	Mirn511|mir-511|mmu-mir-511	microRNA 511	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-122952596-4	chr6	122952488	122952688	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001204241)	promoter-TSS (NM_001204241)	-56.0	NM_153197	73149.0	Mm.25684	NM_153197	ENSMUSG00000043832	Clec4a3	3110037K17Rik|Dcir3	C-type lectin domain family 4, member a3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-67170481-4	chr6	67170414	67170614	+	953.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-96465.0	NM_001113566	66870.0	Mm.240490	NM_025814	ENSMUSG00000036371	Serbp1	1200009K13Rik|9330147J08Rik|AL022786|Pairbp1	serpine1 mRNA binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-113074335-6	chr12	113074242	113074442	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361919)	promoter-TSS (NM_001361919)	-160.0	NM_001361919	75671.0	Mm.23377	NM_029381	ENSMUSG00000012211	Tex22	1700028O09Rik|AV210422|Tep22	testis expressed gene 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-52499491-2	chr3	52499391	52499591	+	680.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17473.0	NR_153344	102631981.0	Mm.394225	NR_153344		Gm30173	-	predicted gene, 30173	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122620530-2	chr8	122620430	122620630	+	692.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001007462, intron 5 of 6)	intron (NM_001007462, intron 5 of 6)	1845.0	NR_105821	102466643.0		NR_105821	ENSMUSG00000098500	Mir6396	Gm27938|mmu-mir-6396	microRNA 6396	ncRNA	-1.31349849087795	-1.28274354783242	-1.29349452597086	-1.3023256995151	-1.3130151546297	-1.28041376602105	-0.694015972326031	-1.30074492367298	2.57396649482007	0.456321314346772	1
Merged-chr4-48074934-2	chr4	48074834	48075034	+	607.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_015743, intron 7 of 7)	intron (NM_015743, intron 7 of 7)	23688.0	NM_001307989	18124.0	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-51638090-4	chr11	51637993	51638193	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2197.0	NM_025346	66089.0	Mm.288183	NM_025346	ENSMUSG00000001054	Rmnd5b	0610039K22Rik|Gid2	required for meiotic nuclear division 5 homolog B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-113397275-1	chr2	113397175	113397375	+	759.0	f1_balb.idr	intron (NM_001285458, intron 2 of 16)	intron (NM_001285458, intron 2 of 16)	-43789.0	NM_001285459	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	-1.84362945061595	-1.81329140012928	-1.67810947190254	-1.83000206547234	-1.84149977556685	-1.81130325271815	-1.67603257143677	-1.82865309133977	0.037684011990387	0.991491645451152	1
Merged-chr9-57835163-4	chr9	57835078	57835278	+	864.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019689)	promoter-TSS (NM_019689)	-944.0	NM_019689	56380.0	Mm.425588	NM_019689	ENSMUSG00000004661	Arid3b	Bdp|Dri2	AT rich interactive domain 3B (BRIGHT-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83038826-4	chr6	83038745	83038945	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013586, intron 4 of 13)	intron (NM_013586, intron 4 of 13)	4621.0	NM_013586	16950.0	Mm.380433	NM_013586	ENSMUSG00000000693	Loxl3	Lor2|Loxl2	lysyl oxidase-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-173739294-2	chr1	173739191	173739391	+	784.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001204910, intron 1 of 7)	intron (NM_001204910, intron 1 of 7)	2518.0	NM_001204910	226691.0	Mm.440876	NM_001204910	ENSMUSG00000073490	Ifi207	AI607873|Pyhin-A|pyhinA	interferon activated gene 207	protein-coding	1.9833591739813	1.29795912216192	1.66293479172199	0.83593579900868	1.30120835324295	0.868697822249111	1.88260542181191	0.838190684371031	-0.7145089243026	0.607044963948384	0.974576632476413
Merged-chr8-92818348-4	chr8	92818237	92818437	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8960.0	NM_008610	17390.0	Mm.29564	NM_008610	ENSMUSG00000031740	Mmp2	Clg4a|GelA|MMP-2	matrix metallopeptidase 2	protein-coding	4.63651245036103	3.23496744847705	3.23412915394433	3.33676748566847	3.75288230102962	3.2600275287664	3.36623760439982	4.32797361713147	-0.0458067512288006	0.936967031652238	0.998431161219273
Merged-chr18-53857823-3	chr18	53857728	53857928	+	873.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-4285.0	NM_152809	70425.0	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	3.96159934118289	2.52051639991349	1.48371770127317	3.59156006817694	3.99198010737781	2.54166639246112	1.49811454627855	3.60984406499098	0.0366049627627712	0.980467333671123	0.998431161219273
Merged-chr10-121367291-4	chr10	121367170	121367370	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029364, intron 1 of 13)	intron (NM_029364, intron 1 of 13)	2180.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-51580495-4	chr6	51580401	51580601	+	862.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361577, intron 5 of 6)	intron (NM_001361577, intron 5 of 6)	35208.0	NM_001361577	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-55442661-2	chr13	55442529	55442729	+	799.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2443.0	NM_001286063	26385.0	Mm.10193	NM_011938	ENSMUSG00000074886	Grk6	Gprk6	G protein-coupled receptor kinase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-51823994-2	chr11	51823894	51824094	+	554.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357588, intron 10 of 12)	intron (NM_001357588, intron 10 of 12)	33487.0	NM_199299	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-60727612-4	chr18	60727504	60727704	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001348103)	promoter-TSS (NM_001348103)	-38.0	NM_001348103	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-116861848-4	chr3	116861758	116861958	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009146, intron 1 of 16)	intron (NM_009146, intron 1 of 16)	178.0	NM_009146	20321.0	Mm.66293	NM_009146	ENSMUSG00000033386	Frrs1	AI131732|Sdfr2	ferric-chelate reductase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-6648814-4	chr13	6648726	6648926	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291071)	promoter-TSS (NM_001291071)	-55.0	NM_001291071	56421.0	Mm.273874	NM_019703	ENSMUSG00000021196	Pfkp	1200015H23Rik|9330125N24Rik|ATP-PFK|PFK-C|PFK-P	phosphofructokinase, platelet	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-8650638-1	chr6	8650538	8650738	+	767.0	f0_balb.idr	intron (NM_001252266, intron 10 of 11)	intron (NM_001252266, intron 10 of 11)	107820.0	NM_001252266	15893.0	Mm.275683	NM_010492	ENSMUSG00000062995	Ica1	69kDa|ICA69	islet cell autoantigen 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-31214151-1	chr8	31214051	31214251	+	1000.0	f1_c57bl6.idr	intron (NM_001286425, intron 3 of 3)	intron (NM_001286425, intron 3 of 3)	26820.0	NM_001286425	171167.0	Mm.334477	NM_134161	ENSMUSG00000046152	Fut10	fuc-TX|fut10A	fucosyltransferase 10	protein-coding	4.60879151389861	1.99625658528407	3.18903927957872	3.43868978356786	2.33831072537563	3.22243348881452	3.84012415892732	3.0072956565197	-0.651702845573344	0.365241145763845	0.861036332257394
Merged-chr6-143114682-4	chr6	143114567	143114767	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153819, intron 7 of 8)	ORR1E|LTR|ERVL-MaLR	-14515.0	NM_001109688	74741.0	Mm.130260	NM_029081	ENSMUSG00000030279	C2cd5	5730419I09Rik|C030008B15Rik|CDP138	C2 calcium-dependent domain containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-91457402-3	chr7	91457305	91457505	+	958.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011807, intron 2 of 22)	intron (NM_011807, intron 2 of 22)	366619.0	NM_011807	23859.0	Mm.147213	NM_011807	ENSMUSG00000052572	Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|Gm21505|PSD93	discs large MAGUK scaffold protein 2	protein-coding	-0.774120033386388	-1.00494690279589	-1.0157728755947	-0.865653646975927	-0.885711117887955	-1.00260086932877	-0.847464536051115	-1.01860600856049	-0.404502495524251	0.886063346301876	1
Merged-chr2-26122338-2	chr2	26122238	26122438	+	579.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026495, intron 1 of 5)	CpG	473.0	NM_026495	67991.0	Mm.131074	NM_026495	ENSMUSG00000026932	Nacc2	0610020I02Rik|AI448087|Btbd14a|C030048H19Rik	nucleus accumbens associated 2, BEN and BTB (POZ) domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25246591-2	chr7	25246491	25246691	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010155, intron 1 of 3)	intron (NM_010155, intron 1 of 3)	4167.0	NM_010155	13875.0	Mm.8068	NM_010155	ENSMUSG00000040857	Erf	-	Ets2 repressor factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-163928633-4	chr2	163928548	163928748	+	995.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9965.0	NM_183023	241770.0	Mm.330760	NM_183023	ENSMUSG00000035226	Rims4	6530406L02|Rim4	regulating synaptic membrane exocytosis 4	protein-coding	5.34788377621121	4.57416276067814	5.11434657953287	4.66244094561744	5.70809232574757	5.30505615827856	5.47025359628673	5.53730361540206	0.633807113565564	0.0386088074730562	0.280178511327658
Merged-chr11-43353193-4	chr11	43353100	43353300	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21261.0	NR_029558	387164.0		NR_029558	ENSMUSG00000065601	Mir146	Mirn146|miR-146a|mmu-mir-146	microRNA 146	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-186575884-4	chr1	186575793	186575993	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17212.0	NR_131158	320449.0	Mm.404477	NR_131124	ENSMUSG00000103690	A730004F24Rik	-	RIKEN cDNA A730004F24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84745758-4	chr8	84745641	84745841	+	923.962524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081982, intron 2 of 9)	intron (NM_001081982, intron 2 of 9)	28628.0	NM_001081981	18032.0	Mm.9394	NM_010906	ENSMUSG00000001911	Nfix	CTF|NF-I/X|NF1-X|NFI-X	nuclear factor I/X	protein-coding	1.2902228099746	0.631164543361951	1.22850599326226	0.791605950551688	1.30387316668954	0.633407257547999	0.623375336592056	1.19302616234426	-0.160996126860053	0.91878289274584	0.998431161219273
Merged-chr4-119195795-2	chr4	119195695	119195895	+	795.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038998, intron 1 of 2)	MIR3|SINE|MIR	270.0	NM_001038998	69216.0	Mm.36697	NM_024462	ENSMUSG00000028643	Svbp	2410005K17Rik|AI851162|Ccdc23	small vasohibin binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101266015-4	chr15	101265918	101266118	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010444)	promoter-TSS (NM_010444)	-828.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-47754240-2	chr9	47754142	47754342	+	710.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	63966.0	NR_046048	100038460.0	Mm.447649	NR_046048		Gm10677	-	predicted gene 10677	ncRNA	-0.593971782808924	-0.229906841943083	-0.860943262579957	-0.863380900560312	-0.866824728787484	-0.852294731670505	-0.860246335031522	-0.862955084542922	-3.08409683035983	0.297545618168977	1
Merged-chr17-10558884-3	chr17	10558789	10558989	+	923.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027032, intron 4 of 4)	Lx8|LINE|L1	102673.0	NR_077238	319750.0	Mm.383485	NR_077237	ENSMUSG00000089633	A230009B12Rik	-	RIKEN cDNA A230009B12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71185449-3	chr17	71185358	71185558	+	743.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022882, intron 1 of 19)	intron (NM_022882, intron 1 of 19)	1480.0	NM_022882	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-37248751-1	chr10	37248651	37248851	+	954.0	f0_balb.idr	Intergenic	RMER19B|LTR|ERVK	-109825.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-55087158-2	chr11	55087058	55087258	+	669.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9027.0	NM_177471	52570.0	Mm.22361	NM_177471	ENSMUSG00000049588	Ccdc69	2210021E03Rik|D11Ertd461e	coiled-coil domain containing 69	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-7366485-3	chr3	7366386	7366586	+	983.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008862)	promoter-TSS (NM_008862)	-118.0	NM_008862	18767.0	Mm.3193	NM_008862	ENSMUSG00000027499	Pkia	AI415001|PKIalpha	protein kinase inhibitor, alpha	protein-coding	1.62966948422551	2.19914979096242	1.35917390667049	1.03504944221984	2.80061122812357	3.39631515635196	1.9828980693691	1.04064189779846	2.11296404507192	0.0512518690564296	0.330602110182281
Merged-chr11-79278768-4	chr11	79278656	79278856	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24061.0	NM_019653	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-19703304-2	chr4	19703204	19703404	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_074090, intron 1 of 24)	intron (NR_074090, intron 1 of 24)	5700.0	NM_177327	107568.0	Mm.78312	NM_177327	ENSMUSG00000041058	Wwp1	8030445B08Rik|AIP5|SDRP1|Tiul1	WW domain containing E3 ubiquitin protein ligase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-125427169-3	chr1	125427095	125427295	+	801.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205386, intron 2 of 12)	MTB_Mm|LTR|ERVL-MaLR	8532.0	NM_001205386	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84837316-2	chr8	84837216	84837416	+	873.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001297606, intron 7 of 8)	intron (NM_001297606, intron 7 of 8)	3349.0	NM_001297607	19358.0	Mm.255539	NM_009010	ENSMUSG00000003813	Rad23a	2310040P19Rik|AL024030|HR23A|mHR23A	RAD23 homolog A, nucleotide excision repair protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-40332007-2	chr9	40331907	40332107	+	682.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357618, intron 3 of 20)	intron (NM_001357618, intron 3 of 20)	-1465.0	NR_040728	73558.0	Mm.398307	NR_040728		1700110K17Rik	-	RIKEN cDNA 1700110K17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-121075903-6	chr7	121075828	121076028	+	990.0277710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021554, intron 4 of 4)	intron (NM_021554, intron 4 of 4)	-1398.0	NM_030691	80719.0	Mm.160384	NM_030691	ENSMUSG00000035004	Igsf6	-	immunoglobulin superfamily, member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-104507257-4	chr2	104507155	104507355	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-12766.0	NM_001145824	15259.0	Mm.257925	NM_010434	ENSMUSG00000027177	Hipk3	DYRK6|FIST3|PKY|mir-1902	homeodomain interacting protein kinase 3	protein-coding	0.973394501227126	0.844449009233489	1.48599276075714	0.819258025646254	1.25724195880362	1.42072765598585	1.71759460159463	1.65634009519159	1.88925133165589	0.158195962103421	0.615978522279375
Merged-chr11-53890509-2	chr11	53890409	53890609	+	774.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011396, intron 1 of 9)	intron (NM_011396, intron 1 of 9)	1194.0	NM_011396	20520.0	Mm.42253	NM_011396	ENSMUSG00000018900	Slc22a5	Lstpl|Octn2|jvs	solute carrier family 22 (organic cation transporter), member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-93991057-2	chr13	93990957	93991157	+	546.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66739.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-12120155-1	chr18	12120055	12120255	+	553.0	f1_balb.idr	intron (NM_178801, intron 1 of 14)	B3A|SINE|B2	1382.0	NR_110356	338363.0	Mm.271567	NM_178801	ENSMUSG00000049411	Tmem241	6030446N20Rik	transmembrane protein 241	protein-coding	0.234341986979431	0.596264727171977	0.246667052362696	0.401107382430029	0.499306747080667	0.254043807531162	0.809392543396964	0.766356530556566	1.62431536784413	0.382304036923362	1
Merged-chr17-64941761-4	chr17	64941672	64941872	+	969.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19C|LTR|ERVK	-105701.0	NM_030031	78057.0	Mm.109380	NM_030031	ENSMUSG00000024088	4930583I09Rik	-	RIKEN cDNA 4930583I09 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-30216804-3	chr14	30216686	30216886	+	874.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083616, intron 3 of 46)	intron (NM_001083616, intron 3 of 46)	136700.0	NM_001302637	12289.0	Mm.9772	NM_028981	ENSMUSG00000015968	Cacna1d	8430418G19Rik|C79217|Cach3|Cacn4|Cacnl1a2|Cav1.3|Cchl1a|Cchl1a2|D-LTCC	calcium channel, voltage-dependent, L type, alpha 1D subunit	protein-coding	-0.36336306221421	-0.605500364346446	-0.608662430483599	-0.611091460904882	-0.357280686873891	-0.126607596537912	-0.607966340993357	-0.610667784438145	1.52979204842182	0.573223077254403	1
Merged-chr3-86960712-1	chr3	86960612	86960812	+	895.0	f0_balb.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-25874.0	NM_001289449	12480.0	Mm.389465	NM_007640	ENSMUSG00000041750	Cd1d2	CD1.2|Cd1b|Ly-38	CD1d2 antigen	protein-coding	1.43556919044692	1.12605861199787	2.23212926861903	1.07767889012464	2.51116232782517	1.80582941621618	2.51951840645552	1.6866792012067	1.65745610550609	0.13601659924933	0.57583879950369
Merged-chr18-50229390-2	chr18	50229290	50229490	+	862.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48979.0	NM_001004061	225497.0	Mm.329435	NM_001004061	ENSMUSG00000035420	Fam170a	Gm93|Znfd	family with sequence similarity 170, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122434824-2	chr8	122434724	122434924	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_138656, exon 9 of 10)	exon (NM_138656, exon 9 of 10)	-1884.0	NM_007806	13057.0	Mm.271671	NM_007806	ENSMUSG00000006519	Cyba	b558|nmf333|p22-phox|p22phox	cytochrome b-245, alpha polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-79699133-1	chr2	79699033	79699233	+	552.0	f1_balb.idr	Intergenic	Intergenic	-8647.0	NM_172420	75276.0	Mm.257373	NM_172420	ENSMUSG00000034683	Ppp1r1c	4930565M23Rik|4930579P15Rik	protein phosphatase 1, regulatory (inhibitor) subunit 1C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101546476-2	chr7	101546376	101546576	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9326.0	NM_007490	11871.0	Mm.439746	NM_007490	ENSMUSG00000092517	Art2a-ps	ARTC2|Art2a|Ly92a|Rt-6|Rt6|Rt6-1	ADP-ribosyltransferase 2a, pseudogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-9937554-2	chr19	9937454	9937654	+	908.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER12|LTR|ERVK	-38021.0	NM_016692	16319.0	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-53138409-2	chr15	53138309	53138509	+	930.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010162, intron 1 of 10)	ID_B1|SINE|B4	207774.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-144995985-3	chr4	144995885	144996085	+	907.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276465, intron 67 of 69)	intron (NM_001276465, intron 67 of 69)	102848.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56751649-3	chr17	56751554	56751754	+	657.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008738, exon 3 of 3)	exon (NM_008738, exon 3 of 3)	5894.0	NM_008738	18188.0	Mm.8074	NM_008738	ENSMUSG00000039481	Nrtn	NTN	neurturin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-103376955-4	chr14	103376859	103377059	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30159.0	NM_207215	105689.0	Mm.6478	NM_207215	ENSMUSG00000033004	Mycbp2	AU023734|AW107953|AW546647|C130061D10Rik|Pam|Phr1|R75243	MYC binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-137727753-2	chr6	137727653	137727853	+	659.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7329.0	NM_011499	20901.0	Mm.22584	NM_011499	ENSMUSG00000030224	Strap	AW557906|C78091|C79202|Unrip	serine/threonine kinase receptor associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-78353090-1	chr6	78352990	78353190	+	780.0	f1_c57bl6.idr	Intergenic	L1Md_T|LINE|L1	-17795.0	NM_011036	18489.0	Mm.2553	NM_011036	ENSMUSG00000071356	Reg3b	HIP|PAP1|Pap|REG-III	regenerating islet-derived 3 beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-96830064-4	chr11	96829954	96830154	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001130450)	promoter-TSS (NM_001130450)	-86.0	NM_008686	18023.0	Mm.6743	NM_008686	ENSMUSG00000038615	Nfe2l1	AA408798|AW212678|LCR-F1|Lcrf1|NRF1|TCF-11|TCF11	nuclear factor, erythroid derived 2,-like 1	protein-coding	6.72239804660061	6.61203243772985	5.91758537936142	7.01544066855197	6.16298843257679	6.4474182800328	6.57061214721848	6.65727735952433	-0.166126997497225	0.481145183074759	0.929210758613564
Merged-chr19-37546484-3	chr19	37546375	37546575	+	688.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3943.0	NM_175353	107371.0	Mm.24865	NM_175353	ENSMUSG00000053799	Exoc6	4833405E05Rik|AW413330|C430002C19|Sec15|Sec15l1|hbd|msec15	exocyst complex component 6	protein-coding	2.50393537900035	2.56250669177553	2.89477233817047	2.41304683416497	2.52387147771736	2.58064283131903	2.91647080769251	2.42490615228595	0.0383498284235974	0.958029903820901	0.998431161219273
Merged-chr16-4839060-2	chr16	4838960	4839160	+	576.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030192, intron 1 of 15)	L1MB7|LINE|L1	3644.0	NM_030192	78809.0	Mm.325551	NM_030192	ENSMUSG00000022518	4930562C15Rik	-	RIKEN cDNA 4930562C15 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-157076400-4	chr1	157076277	157076477	+	831.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32273.0	NM_001305059	73435.0	Mm.116705	NM_028540	ENSMUSG00000026592	Tex35	1700057K13Rik	testis expressed 35	protein-coding	3.79554147163616	3.33742045972874	3.82267484573907	3.22558554818099	2.99668328797796	2.88335373200615	2.63404956256476	3.68043031644377	-0.731981427699596	0.21473108302354	0.705525650237064
Merged-chr2-166996364-4	chr2	166996278	166996478	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011490)	promoter-TSS (NM_011490)	-79.0	NM_001109905	20853.0	Mm.73276	NM_011490	ENSMUSG00000039536	Stau1	5830401L18Rik|AW549911|C85792|Stau	staufen double-stranded RNA binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-10258553-3	chr3	10258459	10258659	+	789.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357159, intron 1 of 4)	intron (NM_001357159, intron 1 of 4)	-4307.0	NM_001357160	75497.0	Mm.47052	NM_029310	ENSMUSG00000027530	Fabp12	1700008G05Rik	fatty acid binding protein 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-64621460-4	chr1	64621345	64621545	+	962.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger5b|DNA|TcMar-Tigger	-4277.0	NM_025964	67099.0	Mm.46394	NM_025964	ENSMUSG00000025956	Mettl21a	2310038H17Rik|AI464204|Fam119a	methyltransferase like 21A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101174843-1	chr15	101174743	101174943	+	557.0	f1_balb.idr	intron (NM_007395, intron 1 of 8)	intron (NM_007395, intron 1 of 8)	771.0	NM_007395	11479.0	Mm.308467	NM_007395	ENSMUSG00000000532	Acvr1b	6820432J04|ALK-4|ActR-IB|ActRIB|Acvrlk4|Alk4|SKR2	activin A receptor, type 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5764061-1	chr19	5763961	5764161	+	556.0	f1_c57bl6.idr	intron (NR_155264, intron 8 of 15)	intron (NR_155264, intron 8 of 15)	7358.0	NM_023912	78891.0	Mm.276063	NM_023912	ENSMUSG00000024941	Scyl1	2810011O19Rik|C85140|Ntkl|mdf|mfd|p105	SCY1-like 1 (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-134556209-4	chr7	134556105	134556305	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-114482.0	NM_001033420	330662.0	Mm.436572	NM_001033420	ENSMUSG00000058325	Dock1	9130006G06Rik|AI854900|D630004B07Rik|b2b3190Clo	dedicator of cytokinesis 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-113061356-4	chr6	113061244	113061444	+	858.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008188, intron 5 of 9)	intron (NM_008188, intron 5 of 9)	15042.0	NM_008188	14911.0	Mm.781	NM_008188	ENSMUSG00000030264	Thumpd3	AW556087|Gt(ROSA)26asSor|Gtrosa26as	THUMP domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33379980-1	chr16	33379880	33380080	+	636.0	f1_balb.idr	promoter-TSS (NM_011749)	promoter-TSS (NM_011749)	756.0	NR_045709	100502742.0	Mm.217880	NR_045709	ENSMUSG00000097318	1700007L15Rik	linc-Iqcg|linc1609	RIKEN cDNA 1700007L15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-13560175-4	chr9	13560086	13560286	+	867.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59803.0	NM_001013813	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	0.335767559047116	0.854959828319061	1.02659512880951	0.344961779317201	0.48586511539891	0.359249126223905	0.820667236712171	0.658107363401307	-0.532898743391549	0.763582783079871	1
Merged-chr15-35757233-4	chr15	35757126	35757326	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177151, intron 35 of 61)	intron (NM_177151, intron 35 of 61)	-96179.0	NR_030606	100124469.0		NR_030606	ENSMUSG00000077890	Mir875	Mirn875|mir-875|mmu-mir-875	microRNA 875	ncRNA	3.63469291824247	2.98424517173251	3.30357940644574	3.12026123725585	3.554857911577	2.86915792153385	2.62084259176381	3.98314579570886	0.149676642994462	0.808332722131305	0.998431161219273
Merged-chr17-80140653-2	chr17	80140553	80140753	+	897.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_176963, intron 2 of 6)	intron (NM_176963, intron 2 of 6)	13182.0	NM_176963	319625.0	Mm.29098	NM_176963	ENSMUSG00000035473	Galm	A530057M15Rik|AU015645|AU020959	galactose mutarotase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-77252705-1	chr5	77252605	77252805	+	680.0	f0_c57.idr	Intergenic	Lx8|LINE|L1	-12789.0	NM_011263	19712.0	Mm.28840	NM_011263	ENSMUSG00000029249	Rest	2610008J04Rik|AA407358|NRSF|REST4	RE1-silencing transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118482450-2	chr11	118482350	118482550	+	629.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153103, intron 5 of 13)	intron (NR_153103, intron 5 of 13)	5618.0	NM_001359368	217364.0	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-45084630-4	chr4	45084517	45084717	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024142)	promoter-TSS (NM_001024142)	-13.0	NM_001024142	269529.0	Mm.389552	NM_001024142	ENSMUSG00000048232	Fbxo10	FBX10|Gm634	F-box protein 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-44259701-1	chr19	44259601	44259801	+	579.0	f0_balb.idr	Intergenic	Intergenic	-33975.0	NM_009128	20250.0	Mm.487021	NM_009128	ENSMUSG00000025203	Scd2	Mir5114|Scd-2|mir-5114|swty	stearoyl-Coenzyme A desaturase 2	protein-coding	0.03561248240949	0.0535152982891863	0.228023894958152	0.0431381355413314	0.698860789136413	0.0548333287022947	0.739320703049832	0.213799480613264	3.24498228716459	0.118597689597936	1
Merged-chr4-117870618-2	chr4	117870518	117870718	+	960.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001034876, intron 4 of 7)	intron (NM_001034876, intron 4 of 7)	1852.0	NM_001034876	381546.0	Mm.440118	NM_001034876	ENSMUSG00000078588	Ccdc24	Gm1028	coiled-coil domain containing 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-109616547-4	chr7	109616469	109616669	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_037617)	promoter-TSS (NR_037617)	-1.0	NR_037617	76954.0	Mm.252009	NM_029811	ENSMUSG00000031024	St5	2010004M01Rik|2610305K15Rik	suppression of tumorigenicity 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-50223213-3	chr6	50223100	50223300	+	686.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018769, intron 5 of 9)	ORR1E|LTR|ERVL-MaLR	38569.0	NM_018769	54722.0	Mm.248361	NM_018769	ENSMUSG00000029821	Gsdme	2310037D07Rik|4932441K13Rik|Dfna5|Dfna5h|EG14210|Fin15	gasdermin E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-72257391-2	chr8	72257291	72257491	+	682.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_007456)	TTS (NM_007456)	17373.0	NM_007456	11767.0	Mm.290086	NM_007456	ENSMUSG00000003033	Ap1m1	AA408894|AP47|Adtm1A|Cltnm|mu1A	adaptor-related protein complex AP-1, mu subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-122565619-4	chr6	122565522	122565722	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	11813.0	NM_009645	11628.0	Mm.391503	NM_009645	ENSMUSG00000040627	Aicda	Aid|Arp2	activation-induced cytidine deaminase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28332727-2	chr17	28332627	28332827	+	724.833374	f1_balb.idr|f1_c57bl6.idr	exon (NM_011566, exon 13 of 13)	exon (NM_011566, exon 13 of 13)	4162.0	NM_001357628	19896.0	Mm.336955	NM_011287	ENSMUSG00000037805	Rpl10a	CsA-19|Nedd6	ribosomal protein L10A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-98344523-2	chr7	98344423	98344623	+	604.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16765.0	NM_001168540	244152.0	Mm.25317	NM_001024619	ENSMUSG00000049580	Tsku	9530051K01Rik|E2ig4|Lrrc54|Tsk	tsukushi, small leucine rich proteoglycan	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-135170039-3	chr6	135169944	135170144	+	649.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1829.0	NM_013546	15199.0	Mm.378937	NM_013546	ENSMUSG00000042770	Hebp1	Hebp|p22HBP	heme binding protein 1	protein-coding	0.188438673925214	-0.143882148221967	-0.14795936865683	0.128519136767653	0.371662120414845	-0.142959881619198	0.0190364887185191	-0.150543465735791	0.268839924075229	0.904538238844164	1
Merged-chr3-8964123-4	chr3	8963960	8964160	+	985.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001025261)	promoter-TSS (NM_001025261)	86.0	NM_001025262	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-24208232-1	chr5	24208132	24208332	+	591.0	f1_c57bl6.idr	Intergenic	Intergenic	43269.0	NM_001346582	231042.0	Mm.45513	NM_153092	ENSMUSG00000048439	Nupl2	AV116043|CG1|NLP-1|Nlp1	nucleoporin like 2	protein-coding	2.035905173543	2.99409024371192	1.9016596423739	1.83781360394476	1.30002162690479	0.951754855406339	0.922845938288362	0.897008550272823	-4.22377398503539	0.00179025609983608	0.0307142412094852
Merged-chr8-88200247-6	chr8	88200107	88200307	+	977.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001164497, exon 2 of 13)	exon (NM_001164497, exon 2 of 13)	994.0	NM_001164498	214627.0	Mm.491211	NM_001164497	ENSMUSG00000036779	Papd5	5730445M16Rik|5830428A09	PAP associated domain containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-62281457-4	chr11	62281370	62281570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029704)	promoter-TSS (NM_029704)	-3.0	NM_028360	72795.0	Mm.489722	NM_028360	ENSMUSG00000042298	Ttc19	2010204O13Rik|2810460C24Rik|AI505442	tetratricopeptide repeat domain 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-109485044-4	chr14	109484989	109485189	+	860.2333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	-570850.0	NM_199065	76965.0	Mm.257268	NM_199065	ENSMUSG00000075478	Slitrk1	3200001I04Rik	SLIT and NTRK-like family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118739042-3	chr11	118738962	118739162	+	846.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024931, intron 2 of 14)	intron (NM_001024931, intron 2 of 14)	21979.0	NM_001285438	52897.0	Mm.341103	NM_001024931	ENSMUSG00000025576	Rbfox3	Fox-3|Hrnbp3|NeuN|Neuna60	RNA binding protein, fox-1 homolog (C. elegans) 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-57777227-4	chr10	57777110	57777310	+	960.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7713.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-95508230-2	chr10	95508130	95508330	+	994.375	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6281.0	NM_001359477	67270.0	Mm.30008	NM_026065	ENSMUSG00000062981	Mrpl42	2700009F22Rik|2900055D03Rik|D10Ertd322e|HSPC204|L31mt|L42mt|MRP-L31|MRP-L42|MRP-S32|PTD007|Rpml31|S32mt	mitochondrial ribosomal protein L42	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-8708304-3	chr11	8708203	8708403	+	890.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43768.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-38876338-4	chr6	38876250	38876450	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001294144)	promoter-TSS (NM_001294144)	-160.0	NM_001294143	15258.0	Mm.23790	NM_010433	ENSMUSG00000061436	Hipk2	1110014O20Rik|B230339E18Rik|Stank	homeodomain interacting protein kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-48337048-4	chr17	48336946	48337146	+	974.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9355.0	NM_031254	83433.0	Mm.261623	NM_031254	ENSMUSG00000023992	Trem2	TREM-2|Trem2a|Trem2b|Trem2c	triggering receptor expressed on myeloid cells 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-124669472-5	chr2	124669428	124669628	+	900.4500119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15947.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-134921004-2	chr4	134920904	134921104	+	933.125	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-2621.0	NM_023665	27981.0	Mm.331964	NM_023665	ENSMUSG00000037266	Rsrp1	2700043I21Rik|D4Ucla2|D4Wsu53e	arginine/serine rich protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-115534955-2	chr14	115534855	115535055	+	549.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175500, intron 5 of 7)	Lx6|LINE|L1	-125403.0	NR_045761	75088.0	Mm.444706	NR_045761	ENSMUSG00000093551	4930505G20Rik	-	RIKEN cDNA 4930505G20 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-44800228-4	chr13	44800120	44800320	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205043, intron 1 of 17)	intron (NM_001205043, intron 1 of 17)	68949.0	NM_001205043	16468.0	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-25528167-2	chr5	25528067	25528267	+	685.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-1851.0	NR_027388	73571.0	Mm.105263	NR_027388	ENSMUSG00000101856	1700096K18Rik	-	RIKEN cDNA 1700096K18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-40636251-2	chr9	40636174	40636374	+	772.0	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-49690.0	NM_133733	71566.0	Mm.280560	NM_133733	ENSMUSG00000032024	Clmp	9030425E11Rik|ACAM|ASP5|AW557819	CXADR-like membrane protein	protein-coding	2.15579124121523	1.77488677084227	1.85216323605817	1.52710391230923	1.47188288149349	1.62300480275556	1.5755033246002	2.20709326111621	-0.273023211504369	0.789712038509088	0.998431161219273
Merged-chr9-99580859-4	chr9	99580745	99580945	+	734.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031403, intron 5 of 7)	B2_Mm2|SINE|B2	5046.0	NM_031403	83703.0	Mm.31324	NM_031403	ENSMUSG00000032469	Dbr1	AW018415	debranching RNA lariats 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-77518076-4	chr8	77517999	77518199	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030113)	promoter-TSS (NM_030113)	-192.0	NM_030113	78514.0	Mm.165974	NM_030113	ENSMUSG00000037148	Arhgap10	A930033B01Rik|PSGAP-m|PSGAP-s	Rho GTPase activating protein 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-156674898-4	chr1	156674824	156675024	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023141)	promoter-TSS (NM_023141)	-585.0	NM_023141	30935.0	Mm.206737	NM_023141	ENSMUSG00000060519	Tor3a	Adir	torsin family 3, member A	protein-coding	4.36963681079573	5.41519080381206	4.89764065702634	5.22218897558299	4.49485177244688	5.44907154776417	5.1956554954667	5.38482487211276	0.176897705546602	0.616580168329536	0.97736719401417
Merged-chr6-83273946-4	chr6	83273839	83274039	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166067, intron 13 of 24)	intron (NM_001166067, intron 13 of 24)	36564.0	NM_001166067	232156.0	Mm.333189	NM_001166067	ENSMUSG00000068323	Slc4a5	C330006M16|C330016K18Rik	solute carrier family 4, sodium bicarbonate cotransporter, member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-92669725-4	chr16	92669628	92669828	+	947.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111022, intron 4 of 6)	RMER17C|LTR|ERVK	27601.0	NM_001111023	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-41303017-1	chr3	41302917	41303117	+	727.0	f0_balb.idr	Intergenic	MER2|DNA|TcMar-Tigger	190182.0	NR_040385	78706.0	Mm.366094	NR_040385	ENSMUSG00000097639	Platr4	C430002E04Rik	pluripotency associated transcript 4	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-69669745-4	chr3	69669637	69669837	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-52318.0	NM_133787	97112.0	Mm.21062	NM_133787	ENSMUSG00000027787	Nmd3	C87860	NMD3 ribosome export adaptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-30058577-2	chr16	30058463	30058663	+	757.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6794.0	NM_008235	15205.0	Mm.390859	NM_008235	ENSMUSG00000022528	Hes1	Hry|bHLHb39	hes family bHLH transcription factor 1	protein-coding	-0.0601784524579514	0.440958050088291	-0.0497432231646876	0.108407510423706	0.209026909384718	0.571093885092882	-0.0486208299978912	-0.0529824531937272	0.548271582724407	0.798659505217108	1
Merged-chr18-36510285-15	chr18	36510198	36510398	+	775.222229	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010415, intron 3 of 5)	intron (NM_010415, intron 3 of 5)	5507.0	NM_010415	15200.0	Mm.289681	NM_010415	ENSMUSG00000024486	Hbegf	AW047313|Dtr|Dts|Hegfl	heparin-binding EGF-like growth factor	protein-coding	0.905550477760753	0.436519865826153	0.428419588819692	0.976626126689482	0.916314479617999	0.438339981091525	0.43020987213766	1.17508591227106	0.373401964458512	0.835876816351858	1
Merged-chr7-43463458-2	chr7	43463358	43463558	+	657.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290316, intron 1 of 9)	intron (NM_001290316, intron 1 of 9)	225.0	NM_001290316	75690.0	Mm.30200	NM_001290316	ENSMUSG00000070604	Vsig10l	-	V-set and immunoglobulin domain containing 10 like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-54825741-1	chr18	54825641	54825841	+	647.0	f1_balb.idr	Intergenic	RMER1A|Other|Other	164439.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-72815956-3	chr8	72815852	72816052	+	963.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010687, exon 15 of 15)	exon (NM_010687, exon 15 of 15)	54293.0	NM_007975	14065.0	Mm.12948	NM_007975	ENSMUSG00000050147	F2rl3	PAR4	coagulation factor II (thrombin) receptor-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56255571-2	chr17	56255471	56255671	+	800.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1222.0	NM_010192	14154.0	Mm.290813	NM_010192	ENSMUSG00000043683	Fem1a	AW611390|Fem1aa	feminization 1 homolog a (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101963043-2	chr11	101962943	101963143	+	622.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_024449, exon 2 of 2)	3' UTR (NM_024449, exon 2 of 2)	3972.0	NM_024449	74499.0	Mm.265602	NM_024449	ENSMUSG00000001494	Sost	5430411E23Rik	sclerostin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-44504333-4	chr11	44504282	44504482	+	981.991699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14582.0	NM_028862	74315.0	Mm.156771	NM_028862	ENSMUSG00000019189	Rnf145	3732413I11Rik|TMRF1	ring finger protein 145	protein-coding	2.87512921208833	3.53841673857474	2.60445154812819	4.22813893505568	3.80173081602629	3.47359528332932	3.74911089800995	2.36679561257167	-0.0204024878323968	0.974962619180735	0.998431161219273
Merged-chr9-110841052-3	chr9	110840936	110841136	+	758.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_153172, exon 6 of 6)	exon (NM_153172, exon 6 of 6)	-3470.0	NM_183103	74306.0	Mm.87419	NM_183103	ENSMUSG00000049719	Prss46	1700112C13Rik|79H19B|Tessp6	protease, serine 46	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-45487351-1	chr9	45487251	45487451	+	737.0	f1_c57bl6.idr	intron (NM_001081270, intron 3 of 32)	intron (NM_001081270, intron 3 of 32)	-56119.0	NR_040732	74602.0	Mm.394117	NR_040732	ENSMUSG00000097074	4833428L15Rik	-	RIKEN cDNA 4833428L15 gene	ncRNA	1.08836285640095	1.22017837615257	1.45192850943884	1.78222652948791	1.09695312297717	0.817013842498305	1.57943986631738	0.791594923505361	-1.16337015320492	0.390128145259759	0.879265642809537
Merged-chr2-66118843-2	chr2	66118743	66118943	+	602.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_015736, intron 1 of 10)	intron (NM_015736, intron 1 of 10)	5950.0	NM_015736	14425.0	Mm.439760	NM_015736	ENSMUSG00000026994	Galnt3	-	polypeptide N-acetylgalactosaminyltransferase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88624324-3	chr3	88624259	88624459	+	968.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198913, intron 1 of 21)	intron (NM_001198913, intron 1 of 21)	2965.0	NM_001198912	16800.0	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	1.49266428153179	0.858154268317397	1.52042711568698	0.830454190750183	1.28446760629233	0.861604351562491	1.75800179721731	1.87201450826154	1.01430080761321	0.463362656395778	0.921961053306225
Merged-chr18-60716907-4	chr18	60716794	60716994	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001348146, intron 1 of 6)	intron (NM_001348146, intron 1 of 6)	10672.0	NM_001348103	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-41084618-2	chr3	41084518	41084718	+	564.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1572.0	NM_027558	70804.0	Mm.40321	NM_027558	ENSMUSG00000049940	Pgrmc2	4631434O19Rik|5730409G06Rik|DG6|PMBP	progesterone receptor membrane component 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101656940-2	chr11	101656840	101657040	+	591.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-8601.0	NM_025404	80981.0	Mm.266840	NM_025404	ENSMUSG00000034936	Arl4d	1110036H21Rik|ARL6|AW456149|Arf4l|Arfl4|Arl5	ADP-ribosylation factor-like 4D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-11688293-2	chr2	11688193	11688393	+	751.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008367, intron 7 of 7)	intron (NM_008367, intron 7 of 7)	-17000.0	NM_001271498	16169.0	Mm.200196	NM_008358	ENSMUSG00000023206	Il15ra	AA690181|IL-15RA	interleukin 15 receptor, alpha chain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-29386520-2	chr17	29386420	29386620	+	941.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR11A2|LTR|ERVK	25606.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-73847595-4	chr13	73847470	73847670	+	832.362488	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028186)	promoter-TSS (NM_028186)	61.0	NM_028186	72293.0	Mm.45506	NM_028186	ENSMUSG00000021567	Nkd2	2210403L10Rik|AW212591|mNkd2	naked cuticle 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-93810603-3	chr13	93810508	93810708	+	729.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009712, intron 4 of 7)	L1_Mus2|LINE|L1	19831.0	NR_049198	100885837.0		NR_049198	ENSMUSG00000093480	Mir5624	Gm25075|mir-5624|mmu-mir-5624	microRNA 5624	ncRNA	0.437538976368046	0.547249849816984	0.171671243482104	0.16641738138462	0.312982501649892	0.38543087728552	0.173169816219918	1.07941260043382	1.32143614663019	0.480006568777045	1
Merged-chr12-86892446-6	chr12	86892259	86892459	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7545.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-57309963-1	chr16	57309863	57310063	+	816.333313	f0_c57.idr	intron (NM_025599, intron 6 of 9)	intron (NM_025599, intron 6 of 9)	-17112.0	NM_027651	71027.0	Mm.158563	NM_027651	ENSMUSG00000022753	Tmem30c	4933401B01Rik|4933409A18Rik|Cdc50c	transmembrane protein 30C	protein-coding	2.49269832336781	2.96904702021433	2.55275707889445	2.38357035951719	1.82587425302637	1.17930152786039	1.14536938335466	1.1149746527068	-3.46915714059824	0.0018001496686517	0.0308545653206902
Merged-chr8-13888019-4	chr8	13887905	13888105	+	873.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359059, intron 1 of 2)	intron (NM_001359059, intron 1 of 2)	2266.0	NM_001359059	66423.0	Mm.29063	NM_025556	ENSMUSG00000031458	Coprs	1700029I03Rik|2410022L05Rik|AA409325|AI256813|C85432|Copr5	coordinator of PRMT5, differentiation stimulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-161359534-3	chr1	161359424	161359624	+	791.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35914.0	NM_009452	22164.0	Mm.4994	NM_009452	ENSMUSG00000026700	Tnfsf4	Ath-1|Ath1|CD134L|OX-40L|Ox40l|TXGP1|Tnlg2b|Txgp1l|gp34	tumor necrosis factor (ligand) superfamily, member 4	protein-coding	0.113504545456383	0.13680227222103	0.129242110059809	0.123362048549707	0.114978780846206	1.0400974870709	0.641250565437126	0.71849396706957	4.30945967655626	0.0345005353331748	1
Merged-chr12-35827955-3	chr12	35827817	35828017	+	764.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4A|LINE|L1	-97704.0	NM_207531	403205.0	Mm.190508	NM_207531	ENSMUSG00000036231	Agr3	BCMP11|E030025L21Rik|Gm888	anterior gradient 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-25706726-2	chr2	25706626	25706826	+	745.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023326)	promoter-TSS (NM_023326)	-153.0	NM_023326	107771.0	Mm.330057	NM_023326	ENSMUSG00000049086	Bmyc	2900002K07Rik|AW060705|Mycb	brain expressed myelocytomatosis oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-119418234-3	chr9	119418141	119418341	+	967.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007397, intron 1 of 9)	intron (NM_007397, intron 1 of 9)	16063.0	NM_001313757	11481.0	Mm.8940	NM_007397	ENSMUSG00000061393	Acvr2b	4930516B21Rik|ActRIIB	activin receptor IIB	protein-coding	4.17768592984979	3.83670523557745	4.08334009021045	4.45410844161795	3.29816522294229	1.80652129507258	2.81358237483073	3.2969035131053	-1.81065078624517	0.00149479902198476	0.0269828465382746
Merged-chr7-30589563-4	chr7	30589446	30589646	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290573)	promoter-TSS (NM_001290573)	166.0	NR_106134	102465774.0		NR_106134	ENSMUSG00000098553	Mir3569	Gm27279|mmu-mir-3569	microRNA 3569	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-75135388-2	chr7	75135288	75135488	+	609.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360573, intron 10 of 13)	intron (NM_001360573, intron 10 of 13)	84631.0	NM_001360575	64176.0	Mm.273082	NM_153579	ENSMUSG00000053025	Sv2b	A830038F04Rik|AI850768|mKIAA0735	synaptic vesicle glycoprotein 2 b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-4211267-4	chr12	4211171	4211371	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159537, intron 19 of 21)	intron (NM_001159537, intron 19 of 21)	22694.0	NM_134046	52504.0	Mm.70546	NM_134046	ENSMUSG00000020652	Cenpo	2810429O05Rik|8430427C03Rik|D12Ertd482e	centromere protein O	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-105055285-2	chr5	105055185	105055385	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1724.0	NM_029509	76074.0	Mm.458519	NM_029509	ENSMUSG00000034438	Gbp8	5830443L24Rik|mGBP8	guanylate-binding protein 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36087300-2	chr1	36087200	36087400	+	637.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_015818, intron 1 of 1)	intron (NM_015818, intron 1 of 1)	18900.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-33589528-2	chr5	33589428	33589628	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37983.0	NM_001359461	74504.0	Mm.294695	NM_178390	ENSMUSG00000037339	Fam53a	2410018C17Rik|5430419M09Rik|Dntnp	family with sequence similarity 53, member A	protein-coding	-0.520821539515656	-0.871583049742127	-0.877923506059039	-0.88003680827373	-0.416899165617375	-0.868958809369053	-0.877318134074192	-0.879668109448034	0.445988717269444	0.886418580920667	1
Merged-chr7-31115753-4	chr7	31115673	31115873	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008281)	promoter-TSS (NM_008281)	-447.0	NM_001110252	15451.0	Mm.19182	NM_008281	ENSMUSG00000001249	Hpn	Hlb320	hepsin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-56086449-4	chr4	56086353	56086553	+	786.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-553978.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140622675-2	chr5	140622575	140622775	+	568.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_175274, exon 14 of 14)	3' UTR (NM_175274, exon 14 of 14)	15334.0	NM_008494	16848.0	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-101927437-2	chr5	101927337	101927537	+	621.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 17 of 66)	intron (NM_172882, intron 17 of 66)	142484.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-8744087-2	chr10	8743987	8744187	+	885.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 12 of 19)	MTEb|LTR|ERVL-MaLR	141983.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-127205719-2	chr1	127205619	127205819	+	828.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145128, intron 1 of 17)	intron (NM_145128, intron 1 of 17)	733.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46011469-2	chr8	46011369	46011569	+	666.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026278, intron 2 of 8)	intron (NM_026278, intron 2 of 8)	867.0	NM_026278	67620.0	Mm.383914	NM_026278	ENSMUSG00000031637	Lrp2bp	1700113N17Rik|2310006J04Rik|4930479L12Rik|MegBP	Lrp2 binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-99046280-4	chr14	99046192	99046392	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175245)	promoter-TSS (NM_175245)	-85.0	NR_153765	77744.0	Mm.23503	NM_175265	ENSMUSG00000022070	Bora	6720463M24Rik|AI317232	bora, aurora kinase A activator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-41788837-4	chr15	41788794	41788994	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_130885)	promoter-TSS (NM_130885)	-101.0	NM_001358976	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-60982808-4	chr18	60982840	60983040	+	878.966675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177407, intron 16 of 17)	intron (NM_177407, intron 16 of 17)	19386.0	NM_001286809	12322.0	Mm.131530	NM_009792	ENSMUSG00000024617	Camk2a	CaMKII|R74975|mKIAA0968	calcium/calmodulin-dependent protein kinase II alpha	protein-coding	0.0935627026303324	0.470736343309686	0.106022067444486	0.26837908245274	0.830607906335181	0.619658825270189	0.107357986177757	0.102162137842554	1.54593536845393	0.451281611857832	1
Merged-chr8-71495130-4	chr8	71495019	71495219	+	973.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7016.0	NM_032544	70359.0	Mm.142112	NM_032544	ENSMUSG00000007610	Gtpbp3	2410009F13Rik|AI607903	GTP binding protein 3	protein-coding	4.29494724290236	3.36313676443059	4.02279350583586	3.25436228714044	3.51006602148739	3.68235429334616	3.56190781629501	3.61137756676281	-0.335231509506399	0.516725460826078	0.947641799425091
Merged-chr12-70753111-3	chr12	70752990	70753190	+	881.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72424.0	NM_028127	319710.0	Mm.2962	NM_028127	ENSMUSG00000048285	Frmd6	2610019M19Rik|4930488L10Rik|AW212977|Willin	FERM domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69398199-2	chr11	69398104	69398304	+	769.233337	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025915)	promoter-TSS (NM_025915)	30.0	NM_025915	67020.0	Mm.390406	NM_025915	ENSMUSG00000045377	Tmem88	2600017H02Rik	transmembrane protein 88	protein-coding	1.76240607831078	1.17003611104784	1.93145351299919	1.55918038643494	1.22938102780437	1.9235623813454	0.918406826120115	0.903247738713764	-1.04837823607997	0.412158711943515	0.894659309956271
Merged-chr4-452-1	chr4	352	552	+	891.7777710000001	f1_c57bl6.idr	Intergenic	Intergenic	-3171631.0	NM_001167534	100312470.0	Mm.480297	NM_001167534	ENSMUSG00000115072	Vmn1r2	Gm11776	vomeronasal 1 receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-93799740-4	chr10	93799618	93799818	+	939.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31837.0	NM_001206851	327799.0	Mm.491598	NM_183199	ENSMUSG00000020020	Usp44	E430004F17Rik	ubiquitin specific peptidase 44	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-13324228-4	chr10	13324147	13324347	+	905.8833619999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033257)	promoter-TSS (NM_001033257)	42.0	NM_001195096	215789.0	Mm.283359	NM_001033257	ENSMUSG00000062866	Phactr2	AV158170|BC012871	phosphatase and actin regulator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-38432173-2	chr18	38432073	38432273	+	551.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355749, intron 1 of 7)	ORR1A4|LTR|ERVL-MaLR	13266.0	NM_001355749	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-36989587-3	chr6	36989481	36989681	+	830.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347104, intron 20 of 32)	intron (NM_001347104, intron 20 of 32)	-179402.0	NM_008973	19242.0	Mm.279690	NM_008973	ENSMUSG00000029838	Ptn	HARP|HB-GAM|HBBM|HBBN|HBGF-8|HBNF|OSF|Osf-1|Osf1	pleiotrophin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-17003397-3	chr7	17003301	17003501	+	892.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	8813.0	NM_001101535	434130.0	Mm.459162	NM_001101535	ENSMUSG00000041117	Ccdc8	-	coiled-coil domain containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-23803562-4	chr17	23803471	23803671	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175229, intron 1 of 13)	CpG	384.0	NM_175229	75956.0	Mm.5222	NM_175229	ENSMUSG00000039218	Srrm2	5033413A03Rik|AA410130|SRm300|mKIAA0324	serine/arginine repetitive matrix 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-85513415-4	chr8	85513289	85513489	+	920.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173866, intron 6 of 11)	MER5A|DNA|hAT-Charlie	20772.0	NM_173866	108682.0	Mm.200423	NM_173866	ENSMUSG00000031700	Gpt2	4631422C05Rik|ALT2|AU014768|AU041193|C87201	glutamic pyruvate transaminase (alanine aminotransferase) 2	protein-coding	1.94806652512317	2.53721568296922	2.34840957755359	1.74747444793259	1.96341488672398	2.55588187249393	2.47124360299376	1.75539603377364	0.115162566401192	0.897083773698648	0.998431161219273
Merged-chr7-4915401-4	chr7	4915289	4915489	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_170759, exon 1 of 3)	5' UTR (NM_170759, exon 1 of 3)	172.0	NM_170759	232816.0	Mm.27442	NM_170759	ENSMUSG00000074406	Zfp628	Zec|Znf628	zinc finger protein 628	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4675856-2	chr16	4675756	4675956	+	710.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030205, intron 2 of 27)	intron (NM_030205, intron 2 of 27)	3864.0	NM_030205	78885.0	Mm.325512	NM_030205	ENSMUSG00000039637	Coro7	0610011B16Rik|AW048373|AW556392	coronin 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-12010111-2	chr19	12009998	12010198	+	823.833374	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	26642.0	NM_146680	258675.0	Mm.271517	NM_146680	ENSMUSG00000067529	Olfr1423	MOR239-3	olfactory receptor 1423	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-116264201-4	chr6	116264095	116264295	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001309446)	promoter-TSS (NM_001309446)	-24.0	NM_001309446	67492.0	Mm.272772	NM_001081317	ENSMUSG00000042213	Zfand4	Anubl1	zinc finger, AN1-type domain 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99379179-2	chr7	99379079	99379279	+	856.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2339.0	NM_001362168	233552.0	Mm.286317	NM_201352	ENSMUSG00000035314	Gdpd5	BC024955|Gde2	glycerophosphodiester phosphodiesterase domain containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-104460221-4	chr2	104460128	104460328	+	851.3916630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010434, intron 2 of 15)	MIRb|SINE|MIR	-31288.0	NR_035432	100316678.0		NR_035432	ENSMUSG00000084516	Mir1902	Mirn1902|mmu-mir-1902	microRNA 1902	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-13790599-2	chr2	13790499	13790699	+	774.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145838, intron 2 of 7)	LTR81C|LTR|Gypsy	2921.0	NM_145838	241230.0	Mm.330004	NM_145838	ENSMUSG00000003418	St8sia6	1700007J08Rik|AI314453|AI875066|ST8SiaVI|Siat8f	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-32423856-2	chr18	32423756	32423956	+	694.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360876, intron 10 of 17)	intron (NM_001360876, intron 10 of 17)	-45572.0	NR_045403	402767.0	Mm.385109	NR_045403	ENSMUSG00000097413	A830052D11Rik	-	RIKEN cDNA A830052D11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-60811458-4	chr18	60811394	60811594	+	910.627808	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_039567)	promoter-TSS (NR_039567)	-582.0	NR_039567	100628611.0		NR_039567	ENSMUSG00000093327	Mir5107	mir-5107|mmu-mir-5107|mu-mir-5107	microRNA 5107	ncRNA	1.37358763900127	0.663147667211534	1.17934917189906	1.26168916661706	0.803348293425936	0.665932281682851	1.7186005484724	0.642607093704443	-0.329025066916733	0.829972206565118	0.998431161219273
Merged-chr7-89126693-3	chr7	89126599	89126799	+	700.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	212088.0	NM_028343	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-91668119-3	chr12	91667967	91668167	+	863.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 4 of 6)	intron (NM_175367, intron 4 of 6)	-77580.0	NM_175335	83602.0	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70789862-2	chr8	70789726	70789926	+	836.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_199308, intron 3 of 25)	intron (NM_199308, intron 3 of 25)	2607.0	NM_199308	546071.0	Mm.250731	NM_199308	ENSMUSG00000031833	Mast3	BC024265|mKIAA0561	microtubule associated serine/threonine kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-35505641-3	chr2	35505509	35505709	+	762.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44160.0	NM_001145821	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100399578-4	chr11	100399481	100399681	+	992.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132425, intron 1 of 3)	intron (NR_132425, intron 1 of 3)	1465.0	NR_132425	102635937.0	Mm.421398	NR_132425		Gm12348	-	predicted gene 12348	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-193796640-2	chr1	193796540	193796740	+	618.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13B|LTR|ERVK	-289110.0	NR_029592	387201.0		NR_029592	ENSMUSG00000065533	Mir205	Mirn205|mir-205|mmu-mir-205	microRNA 205	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-29397660-2	chr17	29397560	29397760	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	36746.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	0.414217526129888	0.167643824588997	0.161647902525527	0.782236916698769	0.420922354671656	0.168995089072347	0.162970564662346	0.790075924285609	0.032087056091868	0.987178062816809	1
Merged-chr10-79755108-4	chr10	79755033	79755233	+	828.891663	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023304)	promoter-TSS (NM_023304)	14.0	NM_023304	67112.0	Mm.154211	NM_023304	ENSMUSG00000020327	Fgf22	2210414E06Rik|FGF-22	fibroblast growth factor 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-99217497-3	chr5	99217415	99217615	+	894.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_145839)	TTS (NM_145839)	35412.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-34198072-4	chr7	34197964	34198164	+	818.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1394.0	NM_001360710	68079.0	Mm.38173	NM_026549	ENSMUSG00000002635	Pdcd2l	6030457N17Rik	programmed cell death 2-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-78249233-2	chr11	78249133	78249333	+	654.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359106, intron 1 of 3)	B4|SINE|B4	3482.0	NM_001359106	20316.0	Mm.20755	NM_009143	ENSMUSG00000002064	Sdf2	AI853825	stromal cell derived factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31169782-2	chr14	31169682	31169882	+	758.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur2|LINE|L1	-1141.0	NM_138672	192187.0	Mm.220821	NM_138672	ENSMUSG00000042286	Stab1	FEEL-1|FELE-1|MFEEL-1|MS-1|STAB-1|mKIAA0246	stabilin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-13716519-4	chr9	13716427	13716627	+	912.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32654.0	NR_024025	77116.0	Mm.210405	NM_023858	ENSMUSG00000031918	Mtmr2	6030445P13Rik	myotubularin related protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115165771-1	chr11	115165671	115165871	+	818.0	f1_balb.idr	intron (NM_012030, intron 1 of 5)	intron (NM_012030, intron 1 of 5)	2430.0	NM_012030	26941.0	Mm.27842	NM_012030	ENSMUSG00000020733	Slc9a3r1	EBP-50|NHE-RF|NHERF-1|NHERF1	solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 1	protein-coding	-0.287600922808311	-0.410214024282235	-0.413750369002423	-0.416466345384701	-0.283873218140396	-0.0691216640518683	-0.412971961380483	0.0917538497796053	2.57599733144979	0.282401736144928	1
Merged-chr17-63921797-4	chr17	63921691	63921891	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001286415, exon 4 of 18)	exon (NM_001286415, exon 4 of 18)	-16181.0	NM_008000	14158.0	Mm.23039	NM_008000	ENSMUSG00000000127	Fer	AV082135|C330004K01Rik|Fert|Fert2	fer (fms/fps related) protein kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-128381968-2	chr7	128381868	128382068	+	735.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026418, intron 4 of 4)	intron (NM_026418, intron 4 of 4)	36204.0	NM_026418	67865.0	Mm.18635	NM_026418	ENSMUSG00000030844	Rgs10	2310010N19Rik	regulator of G-protein signalling 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-40763845-4	chr17	40763744	40763944	+	858.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009420)	TTS (NM_009420)	30302.0	NM_001204071	22024.0	Mm.1296	NM_009420	ENSMUSG00000023930	Crisp2	CRISP-2|GAPDL5|Tpx-1|Tpx1	cysteine-rich secretory protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117304561-3	chr10	117304455	117304655	+	777.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11687.0	NM_013590	17110.0	Mm.177539	NM_013590	ENSMUSG00000069515	Lyz1	Lyz|Lyzf3|Lzp-s	lysozyme 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116418720-3	chr11	116418622	116418822	+	633.333313	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5690.0	NM_027258	217340.0	Mm.426344	NM_027258	ENSMUSG00000052949	Rnf157	2610036E23Rik|A130073L17Rik|mKIAA1917	ring finger protein 157	protein-coding	0.91591059018078	2.17101204378801	1.79122125034209	1.33482880867182	0.919843323165338	1.60065572987176	1.8068012786013	1.49443092745567	-0.472787559208678	0.705731061018524	0.998431161219273
Merged-chr4-155519487-4	chr4	155519386	155519586	+	708.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160016, intron 2 of 11)	intron (NM_001160016, intron 2 of 11)	28125.0	NM_001160016	14688.0	Mm.2344	NM_008142	ENSMUSG00000029064	Gnb1	AA409223|C77571|Gnb-1	guanine nucleotide binding protein (G protein), beta 1	protein-coding	-0.689490068136384	-0.924765769739751	-0.933196722546235	-0.935087199199616	-0.579629653037796	-0.922295978522143	-0.932654620762523	-0.778660670176222	0.93542112734704	0.752314007535959	1
Merged-chr6-120040835-2	chr6	120040735	120040935	+	857.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2180.0	NM_001185021	232341.0	Mm.333349	NM_198703	ENSMUSG00000045962	Wnk1	6430573H23Rik|EG406236|Hsn2|Prkwnk1|mKIAA0344	WNK lysine deficient protein kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-11690258-4	chr11	11690037	11690237	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001301866)	promoter-TSS (NM_001301866)	-40.0	NM_001301865	22778.0	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-112621572-2	chr12	112621472	112621672	+	853.714233	f1_balb.idr|f1_c57bl6.idr	intron (NM_007421, intron 1 of 12)	intron (NM_007421, intron 1 of 12)	1525.0	NM_007421	11565.0	Mm.3440	NM_007421	ENSMUSG00000011148	Adssl1	AI528595|Adss|Adss1	adenylosuccinate synthetase like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-21148547-4	chr14	21148462	21148662	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134079, intron 3 of 10)	intron (NM_134079, intron 3 of 10)	72410.0	NM_001243041	11534.0	Mm.188734	NM_134079	ENSMUSG00000039197	Adk	2310026J05Rik|5033405D03Rik|AI255373|AI987814|Ak	adenosine kinase	protein-coding	2.49260126577751	2.95635064326019	2.39755460008037	3.56144614342455	3.27922920745953	3.73882464128032	3.21043489932638	3.9146050741718	1.01883216394237	0.102105927969456	0.496960300318031
Merged-chr19-26711420-2	chr19	26711320	26711520	+	917.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011416, intron 25 of 32)	intron (NM_011416, intron 25 of 32)	-36745.0	NM_001347439	67155.0	Mm.491146	NM_011416	ENSMUSG00000024921	Smarca2	2610209L14Rik|SNF2alpha|Snf2l2|brahma|brm	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-64888912-2	chr18	64888812	64889012	+	659.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114386, intron 1 of 30)	intron (NM_001114386, intron 1 of 30)	1156.0	NM_001114386	83814.0	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-144204695-2	chr3	144204595	144204795	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010723, intron 1 of 4)	CpG	560.0	NM_010723	16911.0	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34028111-4	chr17	34028013	34028213	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013543)	promoter-TSS (NM_013543)	-58.0	NM_013543	14979.0	Mm.275452	NM_013543	ENSMUSG00000073422	H2-Ke6	D17H6S112E|H-2Ke6|Hsd17b8|Ke-6|Ke6|Ring2	H2-K region expressed gene 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-116016539-3	chr6	116016445	116016645	+	799.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21540.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-31117411-2	chr17	31117311	31117511	+	877.666626	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009593, exon 15 of 15)	3' UTR (NM_009593, exon 15 of 15)	12200.0	NM_011575	21786.0	Mm.4641	NM_011575	ENSMUSG00000024029	Tff3	ITF|mITF	trefoil factor 3, intestinal	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-60815719-10	chr18	60815397	60815597	+	831.446655	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011552, intron 22 of 24)	intron (NM_011552, intron 22 of 24)	3421.0	NR_039567	100628611.0		NR_039567	ENSMUSG00000093327	Mir5107	mir-5107|mmu-mir-5107|mu-mir-5107	microRNA 5107	ncRNA	0.554754658069136	0.590612557425385	0.579056077762082	1.18452740115557	1.2189561761049	1.52705097639558	0.581620093442171	1.30136996022614	2.07539110420794	0.211770901994227	0.700595757939356
Merged-chr11-69043924-3	chr11	69043821	69044021	+	765.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1716.0	NM_011496	20877.0	Mm.3488	NM_011496	ENSMUSG00000020897	Aurkb	AIM-1|AIRK2|AL022959|Aik2|Aim1|Ark2|AurB|IPL1|STK-1|Stk12|Stk5	aurora kinase B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-101660672-1	chr4	101660572	101660772	+	542.0	f1_c57bl6.idr	Intergenic	Intergenic	12889.0	NM_175036	230514.0	Mm.4756	NM_175036	ENSMUSG00000035212	Leprot	LEPR|OB-RGRP|Obrgrp|VPS55	leptin receptor overlapping transcript	protein-coding	2.15654862431947	3.21481930627373	3.02504285188841	2.27818660493231	2.02387872712076	3.46148951568415	2.86225362235793	2.13059042678735	0.0179040517170096	0.98193988752818	0.998431161219273
Merged-chr4-136120212-4	chr4	136120112	136120312	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23610.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	3.64139602732589	2.51652983655431	3.11296137779494	3.65376355521882	3.50241189333634	2.3312690951936	3.71754619623798	3.67163420838133	0.154253635411836	0.807051772666783	0.998431161219273
Merged-chr14-30716268-4	chr14	30716192	30716392	+	992.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166532, intron 1 of 20)	CpG	677.0	NM_001166532	54650.0	Mm.294662	NM_019460	ENSMUSG00000006527	Sfmbt1	4930442N21Rik|9330180L21Rik|AA536974|Sfmbt|Smr	Scm-like with four mbt domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-5577090-1	chr3	5576990	5577190	+	540.0	f1_c57bl6.idr	promoter-TSS (NM_001163301)	promoter-TSS (NM_001163301)	-842.0	NM_008994	19302.0	Mm.132336	NM_008994	ENSMUSG00000040374	Pex2	D3Ertd138e|PAF-1|PMP35|Pxmp3	peroxisomal biogenesis factor 2	protein-coding	2.61377138940724	2.23661826019673	1.0342884024206	1.74645922085057	1.8898448447273	1.88630498620207	1.03965694864292	1.01857199286643	-1.39140930014719	0.257116320799233	0.756222001213238
Merged-chr15-59862405-2	chr15	59862305	59862505	+	639.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-67446.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-74759359-4	chr13	74759271	74759471	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301153, intron 3 of 31)	intron (NM_001301153, intron 3 of 31)	11365.0	NM_001301156	12380.0	Mm.29163	NM_009817	ENSMUSG00000021585	Cast	-	calpastatin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-88063067-4	chr17	88062972	88063172	+	981.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081034, intron 1 of 22)	intron (NM_001081034, intron 1 of 22)	1860.0	NM_001348248	225055.0	Mm.386857	NM_001081034	ENSMUSG00000005371	Fbxo11	C80048|Jf	F-box protein 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116085968-2	chr11	116085868	116086068	+	838.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361446, intron 1 of 6)	intron (NM_001361446, intron 1 of 6)	1027.0	NM_001361446	22378.0	Mm.284792	NM_016852	ENSMUSG00000034341	Wbp2	-	WW domain binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-167220637-4	chr1	167220506	167220706	+	893.7666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	64521.0	NM_030724	80914.0	Mm.280895	NM_030724	ENSMUSG00000026558	Uck2	AA407809|AI481316|AU018180|AU020720|TSA903|UK|UMK|Umpk	uridine-cytidine kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-101720802-3	chr4	101720628	101720828	+	741.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146146, intron 1 of 18)	intron (NM_146146, intron 1 of 18)	3321.0	NM_010704	16847.0	Mm.259282	NM_010704	ENSMUSG00000057722	Lepr	LEPROT|Leprb|Modb1|OB-RGRP|Obr|db|diabetes|obese-like|obl	leptin receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-80042645-2	chr11	80042545	80042745	+	582.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38346.0	NM_001277106	54394.0	Mm.272093	NM_018776	ENSMUSG00000017561	Crlf3	BB164954|Creme9|Cytor4	cytokine receptor-like factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-50111435-4	chr18	50111336	50111536	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16765.0	NM_008292	15488.0	Mm.277857	NM_008292	ENSMUSG00000024507	Hsd17b4	17-beta-HSD|17[b]-HSD|DBP|MFE-2|MFP2|MPF-2|Mfp-2|perMFE-2	hydroxysteroid (17-beta) dehydrogenase 4	protein-coding	5.21124221186668	4.47668757178616	5.07434352137425	5.12339705699218	5.87273621656648	6.29127527672073	5.95209726762078	6.10305691555696	1.1875243838484	1.40092385271061e-05	0.000611952101389146
Merged-chr10-118804820-4	chr10	118804730	118804930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	64073.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-108868127-4	chr8	108868052	108868252	+	853.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007496, intron 4 of 9)	intron (NM_007496, intron 4 of 9)	-68708.0	NR_037295	100526511.0		NR_037295	ENSMUSG00000093241	Mir3108	mir-3108|mmu-mir-3108	microRNA 3108	ncRNA	3.12354409904292	3.2353948550822	3.87900457751328	3.03772203850234	3.67475281142454	2.45458891904194	2.5386316126256	2.45660423924432	-0.739008824457411	0.273437768025862	0.777173011870094
Merged-chr8-124756867-3	chr8	124756762	124756962	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5053.0	NM_001081120	69627.0	Mm.271600	NM_001081120	ENSMUSG00000043068	Fam89a	2310031A18Rik	family with sequence similarity 89, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-82362045-2	chr17	82361945	82362145	+	551.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3C|LINE|L1	-623658.0	NM_011406	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122968501-1	chr5	122968401	122968601	+	554.0	f1_balb.idr	intron (NM_001003953, intron 4 of 22)	intron (NM_001003953, intron 4 of 22)	20598.0	NM_001003953	30841.0	Mm.86406	NM_013910	ENSMUSG00000029475	Kdm2b	Cxxc2|Fbl10|Fbxl10|Jhdm1b|PCCX2	lysine (K)-specific demethylase 2B	protein-coding	1.00572069697582	0.545942016918425	0.537598485112154	1.07635086218561	1.19014439636754	0.547818990007936	0.723974991953109	1.08361955262778	0.490314374159272	0.765206296464257	1
Merged-chr18-9556046-4	chr18	9555951	9556151	+	938.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	63418.0	NM_007593	26369.0	Mm.195831	NM_007593	ENSMUSG00000050996	Cetn1	caltractin	centrin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-21267277-1	chr5	21267177	21267377	+	610.0	f0_balb.idr	intron (NR_153365, intron 18 of 26)	Lx8|LINE|L1	81010.0	NM_001359877	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134120418-4	chr6	134120320	134120520	+	996.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 2 of 8)	intron (NM_001303102, intron 2 of 8)	84720.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-80996789-2	chr8	80996689	80996889	+	894.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_027554, intron 4 of 9)	(A)n|Simple_repeat|Simple_repeat	18117.0	NM_027554	74841.0	Mm.246018	NM_027554	ENSMUSG00000038250	Usp38	4631402N15Rik|4833420O05Rik|AA536967|AU044701|AW544820|mKIAA1891	ubiquitin specific peptidase 38	protein-coding	0.250974621920146	0.46089153047133	0.131517528158053	0.404877845533155	0.254847578259679	0.467955127261303	0.132584581118541	0.522495628859431	0.28805387710669	0.875105800939675	1
Merged-chr17-32232530-2	chr17	32232430	32232630	+	771.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_020508, intron 2 of 19)	intron (NM_020508, intron 2 of 19)	-9390.0	NR_102329	100043434.0		NR_102329		Gm4432	-	predicted gene 4432	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-10849219-2	chr16	10849119	10849319	+	761.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14160.0	NM_001162932	223970.0	Mm.325777	NM_001033278	ENSMUSG00000037991	Rmi2	A630055G03Rik|Gm537|Gm929	RecQ mediated genome instability 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-98249926-2	chr2	98249826	98250026	+	631.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2B|LINE|L1	782269.0	NM_178725	241568.0	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-20390779-3	chr10	20390687	20390887	+	854.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42968.0	NM_027930	71804.0	Mm.262151	NM_027930	ENSMUSG00000019992	Mtfr2	2610016C23Rik|4933412C16Rik|Dufd1|Fam54a	mitochondrial fission regulator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-8708961-2	chr19	8708861	8709061	+	851.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161413, intron 8 of 9)	intron (NM_001161413, intron 8 of 9)	4936.0	NM_008577	17254.0	Mm.4114	NM_008577	ENSMUSG00000010095	Slc3a2	4F2|4F2HC|AI314110|Cd98|Ly-10|Ly-m10|Ly10|Mdu1|Mgp-2hc|NACAE	solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-103848525-2	chr13	103848425	103848625	+	670.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001005868, intron 15 of 26)	intron (NM_001005868, intron 15 of 26)	72061.0	NM_001289473	59079.0	Mm.277354	NM_021563	ENSMUSG00000021709	Erbin	1700028E05Rik|Erbb2ip|mKIAA1225	Erbb2 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-28081236-4	chr3	28081147	28081347	+	884.412476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008875, intron 15 of 25)	intron (NM_008875, intron 15 of 25)	97076.0	NM_008875	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25396155-4	chr7	25396095	25396295	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010719)	promoter-TSS (NM_010719)	-208.0	NM_010719	16890.0	Mm.158548	NM_010719	ENSMUSG00000003123	Lipe	4933403G17Rik|HSL	lipase, hormone sensitive	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139749934-2	chr5	139749834	139750034	+	692.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13601.0	NM_174850	231830.0	Mm.240510	NM_174850	ENSMUSG00000036718	Micall2	A930021H16Rik|JRAB|MICAL-L2|mFLJ00139	MICAL-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-72321956-1	chr8	72321856	72322056	+	1000.0	f1_c57bl6.idr	TTS (NM_008452)	TTS (NM_008452)	2894.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	4.31669589897679	4.22646975861877	4.2105225382923	4.09887399495769	4.17960441444514	3.11279176713645	4.1830789590749	4.27748578045806	-0.260022946721239	0.560649426559001	0.960350977191929
Merged-chr3-31425593-4	chr3	31425501	31425701	+	985.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1A|DNA|hAT-Charlie	-115282.0	NM_172861	241919.0	Mm.285366	NM_172861	ENSMUSG00000069072	Slc7a14	A930013N06|BC061928	solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122820964-4	chr5	122820862	122821062	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042491, intron 1 of 16)	CpG	380.0	NM_021505	59008.0	Mm.332667	NM_021505	ENSMUSG00000029472	Anapc5	2510006G12Rik|AA408751|AA536819|AA986414|APC5|Anpc5	anaphase-promoting complex subunit 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-100065754-2	chr12	100065654	100065854	+	787.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-46577.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-68472076-4	chr2	68471956	68472156	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016866)	promoter-TSS (NM_016866)	-75.0	NM_016866	53416.0	Mm.198414	NM_016866	ENSMUSG00000027030	Stk39	AW227544|AW556857|DCHT|RF005|Rnl5|SPAK	serine/threonine kinase 39	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-73794243-4	chr12	73794186	73794386	+	998.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-107038.0	NM_001313920	15251.0	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-102629771-2	chr14	102629671	102629871	+	612.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	352861.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-61930324-4	chr11	61930225	61930425	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019921)	promoter-TSS (NM_019921)	-68.0	NM_019921	56697.0	Mm.274404	NM_019921	ENSMUSG00000047804	Akap10	1500031L16Rik|B130049N18Rik|D-AKAP-2|D-AKAP2|PRKA10	A kinase (PRKA) anchor protein 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-46462183-4	chr11	46462109	46462309	+	997.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134250, intron 3 of 6)	intron (NM_134250, intron 3 of 6)	7278.0	NM_134250	171285.0	Mm.72168	NM_134250	ENSMUSG00000020399	Havcr2	TIM-3|Tim3|Timd3	hepatitis A virus cellular receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-86485948-2	chr11	86485848	86486048	+	915.2999880000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_029788, intron 1 of 8)	intron (NM_029788, intron 1 of 8)	1291.0	NM_029788	76892.0	Mm.262707	NM_029788	ENSMUSG00000020521	Rnft1	0610013E23Rik|AV007605	ring finger protein, transmembrane 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-139099488-4	chr3	139099407	139099607	+	808.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-24306.0	NM_001356388	229877.0	Mm.28893	NM_145544	ENSMUSG00000028149	Rap1gds1	BC011279|GDS1	RAP1, GTP-GDP dissociation stimulator 1	protein-coding	2.28250204529032	1.45265872495464	0.982172599688112	2.06243084305028	1.87987013007408	1.00696158877203	1.22216663465302	1.52737174618132	-1.03722987869414	0.399281642776294	0.885176145862419
Merged-chr15-100102323-4	chr15	100102223	100102423	+	618.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_037311, intron 2 of 3)	intron (NR_037311, intron 2 of 3)	-52073.0	NM_172819	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-12051995-3	chr15	12051889	12052089	+	861.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55982.0	NM_011294	20024.0	Mm.41746	NM_011294	ENSMUSG00000022205	Sub1	AI842364|P15|P9|Pc4|Rpo2tc1	SUB1 homolog (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-29629572-3	chr2	29629483	29629683	+	831.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054050, intron 1 of 23)	intron (NM_054050, intron 1 of 23)	9863.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-83442651-4	chr15	83442569	83442769	+	994.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358643, intron 1 of 9)	intron (NM_001358643, intron 1 of 9)	5211.0	NM_001358644	23970.0	Mm.23978	NM_011862	ENSMUSG00000016664	Pacsin2	AI197433	protein kinase C and casein kinase substrate in neurons 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-119937592-4	chr9	119937489	119937689	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028976)	promoter-TSS (NM_028976)	-17.0	NM_028735	74052.0	Mm.189573	NM_028735	ENSMUSG00000032514	Ttc21a	4921538N17Rik|AA387572|Thm2	tetratricopeptide repeat domain 21A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-34076006-3	chr13	34075919	34076119	+	860.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009450, intron 3 of 3)	intron (NM_009450, intron 3 of 3)	1989.0	NM_009450	22151.0	Mm.422827	NM_009450	ENSMUSG00000058672	Tubb2a	M(beta)2|Tubb2	tubulin, beta 2A class IIA	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-69229602-1	chr12	69229502	69229702	+	561.0	f1_c57bl6.idr	Intergenic	ORR1A3|LTR|ERVL-MaLR	-1412.0	NM_011133	18974.0	Mm.9199	NM_011133	ENSMUSG00000020974	Pole2	-	polymerase (DNA directed), epsilon 2 (p59 subunit)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-21808330-3	chr3	21808228	21808428	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1A|DNA|hAT-Charlie	-268324.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69012516-4	chr11	69012400	69012600	+	996.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR34C_MM|LTR|ERVK	-3411.0	NM_001281465	68964.0	Mm.285785	NM_001013256	ENSMUSG00000020898	Ctc1	1500010J02Rik|AAF-132|AAF132	CTS telomere maintenance complex component 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-156003324-1	chr1	156003224	156003424	+	619.0	f1_balb.idr	Intergenic	RMER1B|Other|Other	-30069.0	NM_001039184	74081.0	Mm.260247	NM_001039184	ENSMUSG00000033671	Cep350	4933409L06Rik|6430546F08Rik	centrosomal protein 350	protein-coding	0.0426659623282992	0.833786872852968	0.293194016817177	0.0560404646382265	0.0446808231025682	1.37148197161266	0.0661381242283152	0.0574253199034059	0.936660744046073	0.646417013656607	1
Merged-chr17-26462772-4	chr17	26462685	26462885	+	911.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45687.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-62201110-2	chr1	62201010	62201210	+	702.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081050, intron 11 of 22)	intron (NM_001081050, intron 11 of 22)	-65001.0	NR_151537	105243940.0		NR_151537		Pard3bos2	Gm12747	par-3 family cell polarity regulator beta, opposite strand 2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-132112478-4	chr2	132112362	132112562	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355430, intron 1 of 15)	intron (NM_001355430, intron 1 of 15)	32646.0	NM_001355431	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-43086221-2	chr15	43086121	43086321	+	809.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357956, intron 3 of 5)	intron (NM_001357956, intron 3 of 5)	84597.0	NM_001357957	239405.0	Mm.193274	NM_172815	ENSMUSG00000051920	Rspo2	2610028F08Rik|AA673245|D430027K22|ftls	R-spondin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-57693199-4	chr15	57693112	57693312	+	973.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1455.0	NM_199449	387609.0	Mm.36557	NM_199449	ENSMUSG00000071757	Zhx2	Afr-1|Afr1|Raf|mKIAA0854	zinc fingers and homeoboxes 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120045179-2	chr8	120045079	120045279	+	629.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310635, intron 14 of 14)	intron (NM_001310635, intron 14 of 14)	52741.0	NM_001310635	78892.0	Mm.264680	NM_030209	ENSMUSG00000031825	Crispld2	1810049K24Rik|Lcrisp2|Lgl1|coffeecrisp	cysteine-rich secretory protein LCCL domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-46930957-1	chr13	46930857	46931057	+	548.0	f0_c57.idr	Intergenic	Intergenic	-1239.0	NM_010617	16553.0	Mm.342703	NM_010617	ENSMUSG00000021375	Kif13a	4930505I07Rik|mKIAA4109	kinesin family member 13A	protein-coding	-0.944452312839821	-1.06980499840527	-1.08137418347786	-1.08830806243699	-1.09125475322374	-1.06729790773803	-0.492469820684107	-1.08794360978941	1.85122623007205	0.563032835033943	1
Merged-chr6-84026318-4	chr6	84026179	84026379	+	833.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310152, intron 1 of 53)	intron (NM_001310152, intron 1 of 53)	6893.0	NM_021469	26903.0	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-84033731-2	chr3	84033631	84033831	+	635.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172681, intron 2 of 34)	intron (NM_172681, intron 2 of 34)	6430.0	NM_172681	229473.0	Mm.28838	NM_172681	ENSMUSG00000033767	Tmem131l	D930015E06Rik|Kiaa0922|mKIAA0922	transmembrane 131 like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-111054719-2	chr9	111054619	111054819	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001302376)	TTS (NM_001302376)	2525.0	NM_001302377	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-8912408-4	chr10	8912296	8912496	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26326.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-144245065-4	chr1	144244960	144245160	+	932.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_015811, exon 5 of 5)	3' UTR (NM_015811, exon 5 of 5)	4044.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-23109386-4	chr8	23109291	23109491	+	860.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_102385, intron 21 of 45)	intron (NR_102385, intron 21 of 45)	-29639.0	NM_001310436	11733.0	Mm.334444	NM_031158	ENSMUSG00000031543	Ank1	Ank-1|nb|pale	ankyrin 1, erythroid	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124996768-4	chr6	124996677	124996877	+	867.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175696)	promoter-TSS (NM_175696)	57.0	NM_175696	319352.0	Mm.295327	NM_175696	ENSMUSG00000030329	Pianp	AI255183|AU067746|C530028O21Rik|Panp	PILR alpha associated neural protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-24493321-2	chr5	24493221	24493421	+	593.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359881, intron 11 of 15)	intron (NM_001359881, intron 11 of 15)	33527.0	NM_015739	231044.0	Mm.246596	NM_015739	ENSMUSG00000067724	Gbx1	Gbx-1	gastrulation brain homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-54989271-4	chr18	54989179	54989379	+	953.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360787, intron 1 of 8)	intron (NM_001360787, intron 1 of 8)	901.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-77968375-2	chr10	77968275	77968475	+	911.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_138301, intron 2 of 33)	intron (NM_138301, intron 2 of 33)	1497.0	NM_138301	28240.0	Mm.276762	NM_138301	ENSMUSG00000009292	Trpm2	9830168K16Rik|C79133|LTRPC2|TRPC7|Trp7|Trrp7	transient receptor potential cation channel, subfamily M, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-120219497-2	chr10	120219397	120219597	+	641.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026617, intron 3 of 6)	B2_Mm1a|SINE|B2	-7563.0	NM_025431	66225.0	Mm.291755	NM_025431	ENSMUSG00000020224	Llph	1190005P17Rik	LLP homolog, long-term synaptic facilitation (Aplysia)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97126348-1	chr11	97126248	97126448	+	556.0	f1_balb.idr	Intergenic	Intergenic	-11017.0	NM_019507	57765.0	Mm.94519	NM_019507	ENSMUSG00000001444	Tbx21	TBT1|Tbet|Tblym	T-box 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-55477525-2	chr16	55477425	55477625	+	574.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17206.0	NR_039578	100628589.0		NR_039578	ENSMUSG00000093292	Mir5118	mmu-mir-5118|mu-mir-5118	microRNA 5118	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-173429782-4	chr1	173429634	173429834	+	889.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013779, intron 2 of 8)	intron (NM_001013779, intron 2 of 8)	9130.0	NM_001013779	383619.0	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	-1.84335282827126	-1.8131721693203	-1.82229904969614	-1.82979614098203	-1.69762670694229	-1.6675868413945	-1.82023292403457	-1.82845416522631	1.43472749533542	0.684151459466795	1
Merged-chr2-145786163-1	chr2	145786063	145786263	+	614.0	f0_balb.idr	promoter-TSS (NM_028724)	promoter-TSS (NM_028724)	47.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-125341872-4	chr5	125341704	125341904	+	801.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001205082)	promoter-TSS (NM_001205082)	-710.0	NM_001205083	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-37430642-3	chr6	37430542	37430742	+	710.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178661, intron 1 of 11)	L2|LINE|L2	11506.0	NM_178661	208647.0	Mm.169929	NM_178661	ENSMUSG00000038648	Creb3l2	BBF2H7|C530025K05Rik|SCIRR69	cAMP responsive element binding protein 3-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-46452308-4	chr18	46452215	46452415	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13501.0	NR_045438	72076.0	Mm.82766	NM_028086		Mospd4	2010013H21Rik	motile sperm domain containing 4	pseudo	2.64285290834564	2.30005844000015	2.52338368389617	2.87709558040768	3.48287807304211	2.12281844678235	2.54319161669483	3.13163144517366	0.639626636369973	0.388738547587774	0.878578793881975
Merged-chr19-6924699-4	chr19	6924609	6924809	+	789.924988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008431)	TTS (NM_008431)	671.0	NM_001039494	67077.0	Mm.251306	NM_001039494	ENSMUSG00000050623	Catsperz	1700019N12Rik|A430107B04Rik|MLZ-622|Tex40	cation channel sperm associated auxiliary subunit zeta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-59380040-3	chr4	59379942	59380142	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163288, intron 7 of 16)	intron (NM_001163288, intron 7 of 16)	58591.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97417827-2	chr11	97417727	97417927	+	873.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32333.0	NM_021493	58996.0	Mm.394118	NM_021493	ENSMUSG00000049807	Arhgap23	A330041B18Rik	Rho GTPase activating protein 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-82402822-4	chr8	82402716	82402916	+	997.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001254747)	promoter-TSS (NM_001254747)	-230.0	NM_008357	16168.0	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	0.662533146413503	0.483907187811463	2.32801751057392	0.440810634444581	0.671609541117024	0.48911541428726	2.35150962370801	0.444235436903482	0.0414350900693368	0.987807207279168	0.998431161219273
Merged-chr5-63867227-2	chr5	63867127	63867327	+	585.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029554, intron 1 of 3)	intron (NM_029554, intron 1 of 3)	54732.0	NM_029554	76261.0	Mm.38143	NM_029554	ENSMUSG00000060512	0610040J01Rik	AI662686	RIKEN cDNA 0610040J01 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-120443439-4	chr1	120443318	120443518	+	954.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	61606.0	NM_010766	17167.0	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46486151-2	chr19	46486051	46486251	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_015752, exon 12 of 12)	3' UTR (NM_015752, exon 12 of 12)	-15497.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-113619931-2	chr13	113619831	113620031	+	744.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1367.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-88662241-2	chr15	88662141	88662341	+	661.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61939.0	NM_027306	70073.0	Mm.45306	NM_027306	ENSMUSG00000054117	Zdhhc25	1700030J15Rik	zinc finger, DHHC domain containing 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-121453978-4	chr5	121453856	121454056	+	886.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029912, intron 1 of 9)	RMER10A|LTR|ERVL	1247.0	NM_029912	77462.0	Mm.358781	NM_029912	ENSMUSG00000029452	Tmem116	4930406A18Rik|4930513P12Rik|C030022K24Rik	transmembrane protein 116	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-54375972-2	chr13	54375872	54376072	+	603.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009946, intron 1 of 3)	intron (NM_009946, intron 1 of 3)	4623.0	NM_009946	12890.0	Mm.268902	NM_009946	ENSMUSG00000025867	Cplx2	921-L|AI413745|AW492120|Gm34843	complexin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-126932035-1	chr2	126931935	126932135	+	576.0	f0_balb.idr	intron (NM_023220, intron 1 of 14)	intron (NM_023220, intron 1 of 14)	1200.0	NM_023220	66552.0	Mm.269928	NM_023220	ENSMUSG00000027366	Sppl2a	2010106G01Rik|C130089K23Rik	signal peptide peptidase like 2A	protein-coding	-0.391576954262341	-0.517340489662345	-0.520762687953453	-0.0121983929920566	-0.527095534610047	-0.516567096097321	-0.52000913436352	-0.110316413515512	-0.659143899526938	0.803338156251245	1
Merged-chr3-104999393-2	chr3	104999293	104999493	+	896.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-37684.0	NM_009520	22414.0	Mm.10740	NM_009520	ENSMUSG00000027840	Wnt2b	Wnt13	wingless-type MMTV integration site family, member 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-80253740-1	chr15	80253640	80253840	+	634.0	f1_c57bl6.idr	TTS (NM_178719)	TTS (NM_178719)	-1444.0	NM_001287180	11911.0	Mm.641	NM_009716	ENSMUSG00000042406	Atf4	Atf-4|C/ATF|CREB2|TAXREB67	activating transcription factor 4	protein-coding	1.72814262350796	2.07004696298987	1.01728512090686	0.991260033636816	1.37098305639134	0.81357199747378	0.797411064799067	1.32122373388007	-1.56338180782538	0.246488852283533	0.74563204527445
Merged-chr13-103921553-4	chr13	103921476	103921676	+	973.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289474)	promoter-TSS (NM_001289474)	-990.0	NM_001005868	59079.0	Mm.277354	NM_021563	ENSMUSG00000021709	Erbin	1700028E05Rik|Erbb2ip|mKIAA1225	Erbb2 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-115838405-4	chr4	115838299	115838499	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021461)	promoter-TSS (NM_021461)	-799.0	NM_001285488	17346.0	Mm.209327	NM_021461	ENSMUSG00000028708	Mknk1	2410048M24Rik|Mnk1	MAP kinase-interacting serine/threonine kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-95048855-4	chr4	95048748	95048948	+	848.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010591)	TTS (NM_010591)	3374.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-58746349-4	chr15	58746256	58746456	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	77071.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-152707675-2	chr3	152707575	152707775	+	898.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6425.0	NM_178016	329777.0	Mm.331447	NM_025662	ENSMUSG00000039047	Pigk	3000001O05Rik|Gm38470|PIG-K	phosphatidylinositol glycan anchor biosynthesis, class K	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123137806-4	chr5	123137710	123137910	+	963.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4383.0	NM_001040398	208043.0	Mm.250391	NM_177581	ENSMUSG00000038384	Setd1b	AA516740|BC035291|KMT2G|mKIAA1076	SET domain containing 1B	protein-coding	2.46560678012094	2.76445240928656	2.14716787165094	3.26895227390715	2.00058395250152	2.78465553280263	2.32056786481695	2.50299603385737	-0.631165236122733	0.419067270276834	0.898921771534229
Merged-chr17-81599348-3	chr17	81599246	81599446	+	906.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 2 of 8)	intron (NR_104580, intron 2 of 8)	139041.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-135228515-4	chr6	135228393	135228593	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_028982, exon 10 of 13)	exon (NM_028982, exon 10 of 13)	19391.0	NM_001080552	14840.0	Mm.272306	NM_010352	ENSMUSG00000030206	Gsg1	-	germ cell associated 1	protein-coding	3.69181306259306	2.82940525652584	4.52358455756907	3.29162515016804	2.51587361599771	2.99367282435334	2.88809535830305	3.2215066558176	-1.28959724388719	0.0405087143878253	0.286908828350135
Merged-chr2-71505066-4	chr2	71504967	71505167	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025633, intron 1 of 9)	intron (NM_025633, intron 1 of 9)	-24378.0	NM_010053	13390.0	Mm.475101	NM_010053	ENSMUSG00000041911	Dlx1	Dlx|Dlx-1	distal-less homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-6007357-2	chr17	6007257	6007457	+	839.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290698)	promoter-TSS (NM_001290698)	-223.0	NM_001290698	20975.0	Mm.236068	NM_011523	ENSMUSG00000023805	Synj2	AI481647|SJ2|mKIAA0348	synaptojanin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81856273-4	chr15	81856175	81856375	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020507, intron 1 of 1)	CpG	2051.0	NM_020507	57259.0	Mm.323595	NM_020507	ENSMUSG00000048546	Tob2	2900090N22Rik|4930545K18Rik|AV071822|mKIAA1663	transducer of ERBB2, 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-179517172-4	chr1	179517086	179517286	+	922.883301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027188, intron 1 of 11)	intron (NM_027188, intron 1 of 11)	855.0	NM_027188	69726.0	Mm.222338	NM_027188	ENSMUSG00000055067	Smyd3	2410008A19Rik|Zmynd1	SET and MYND domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107521886-1	chr9	107521786	107521986	+	556.0	f0_balb.idr	intron (NM_001174047, intron 23 of 38)	intron (NM_001174047, intron 23 of 38)	-12059.0	NM_019704	56395.0	Mm.260153	NM_019704	ENSMUSG00000010045	Tmem115	C78915|Pl6|Pp6	transmembrane protein 115	protein-coding	-0.555902259937479	-0.683272487958369	-0.686348290207527	-0.396749291289357	-0.692039069288472	-0.682577335125591	-0.68567104047264	-0.168998823831755	0.512105714410998	0.852635430077674	1
Merged-chr2-26964376-4	chr2	26964263	26964463	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207234)	promoter-TSS (NM_207234)	23.0	NM_207234	227656.0	Mm.291874	NM_207234	ENSMUSG00000052406	Rexo4	Gm111|Rex4|Xpmc2h	REX4, 3'-5' exonuclease	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-106009532-2	chr12	106009432	106009632	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011705)	promoter-TSS (NM_011705)	-731.0	NM_011705	22367.0	Mm.2981	NM_011705	ENSMUSG00000021115	Vrk1	51PK	vaccinia related kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-86393781-2	chr1	86393681	86393881	+	543.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4420.0	NM_001319227	14767.0	Mm.389159	NM_010341	ENSMUSG00000026237	Nmur1	FM-3|Gpr66|NMU-R1|NMU1R|NmU-R	neuromedin U receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97320623-2	chr6	97320432	97320632	+	980.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 12 of 23)	ID_B1|SINE|B4	-67752.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	0.171689335936	-0.721486509227273	-0.725434446378201	-0.728491828995993	-0.572344886542178	-0.720598883743848	-0.724562266450682	-0.727956989125025	-2.55206302487904	0.369470321878157	1
Merged-chr17-10407248-2	chr17	10407148	10407348	+	724.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027032, intron 4 of 4)	intron (NM_027032, intron 4 of 4)	-48968.0	NR_077239	319750.0	Mm.383485	NR_077237	ENSMUSG00000089633	A230009B12Rik	-	RIKEN cDNA A230009B12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-97673639-3	chr1	97673545	97673745	+	698.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-11627.0	NM_133825	52392.0	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-158115207-2	chr2	158115107	158115307	+	646.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23410.0	NR_040609	72340.0	Mm.443395	NR_040609	ENSMUSG00000100860	2010009K17Rik	-	RIKEN cDNA 2010009K17 gene	ncRNA	0.0599092008841667	-0.376772437458731	-0.212563692435947	-0.383320922942654	0.15510334026817	-0.375935499889491	-0.379660007817429	-0.382824503610461	-0.0366808268220387	0.988538278728784	1
Merged-chr10-79997314-4	chr10	79997215	79997415	+	811.148804	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013850)	promoter-TSS (NM_013850)	-293.0	NM_001347081	27403.0	Mm.103351	NM_013850	ENSMUSG00000035722	Abca7	ABCX|Abc51	ATP-binding cassette, sub-family A (ABC1), member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-63980288-4	chr7	63980180	63980380	+	901.81665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB7|LINE|L1	-41365.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65528925-2	chr9	65528825	65529025	+	664.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	51162.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-39171294-4	chr10	39171191	39171391	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7497.0	NM_001127376	327743.0	Mm.208111	NM_001127376	ENSMUSG00000062074	Wisp3	CCN6|Gm735|WISP-3	WNT1 inducible signaling pathway protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-85928607-4	chr10	85928505	85928705	+	869.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001163614, exon 1 of 1)	exon (NM_001163614, exon 1 of 1)	114.0	NM_001163614	67341.0	Mm.382315	NM_001163614	ENSMUSG00000085111	Ascl4	1700054F16Rik|bHLHa44	achaete-scute family bHLH transcription factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-74948629-2	chr14	74948529	74948729	+	789.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252132)	promoter-TSS (NM_001252132)	-752.0	NM_001033439	380916.0	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-151859407-3	chr4	151859294	151859494	+	911.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081557, intron 1 of 23)	intron (NM_001081557, intron 1 of 23)	2374.0	NM_001081557	100072.0	Mm.318846	NM_001081557	ENSMUSG00000014592	Camta1	1810059M14Rik|2310058O09Rik|AI316882|AW987475|mKIAA0833	calmodulin binding transcription activator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59744154-2	chr15	59744054	59744254	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	50805.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81015064-4	chr10	81014964	81015164	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010319)	promoter-TSS (NM_010319)	-139.0	NM_010319	14708.0	Mm.222496	NM_010319	ENSMUSG00000048240	Gng7	AI840417	guanine nucleotide binding protein (G protein), gamma 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-8469148-1	chr11	8469048	8469248	+	750.0	f1_balb.idr	intron (NM_001083587, intron 20 of 30)	intron (NM_001083587, intron 20 of 30)	195387.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	-2.18361151404719	-2.02201993626881	-2.16403530460334	-2.1710062446989	-2.18164157430194	-2.15370992785044	-2.16211418110791	-2.16975844975469	-0.683654500252594	0.846597994014493	1
Merged-chr8-40304605-4	chr8	40304511	40304711	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3318.0	NR_106126	102466237.0		NR_106126	ENSMUSG00000098431	Mir7666	Gm27915|mmu-mir-7666	microRNA 7666	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-57778112-2	chr10	57778012	57778212	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6811.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-33439311-3	chr17	33439215	33439415	+	856.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6416.0	NM_183282	69481.0	Mm.154333	NM_183282	ENSMUSG00000092519	Actl9	1700029I08Rik|AV259599	actin-like 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-17858093-3	chr5	17858009	17858209	+	925.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159558, intron 1 of 15)	RMER1B|Other|Other	-8317.0	NM_001159556	12491.0	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 molecule	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27756202-3	chr2	27756077	27756277	+	859.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290481, intron 7 of 9)	intron (NM_001290481, intron 7 of 9)	45594.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-21634753-2	chr10	21634653	21634853	+	636.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	41608.0	NR_027968	67692.0	Mm.54306	NM_183266	ENSMUSG00000050844	1700020N01Rik	-	RIKEN cDNA 1700020N01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-79305835-4	chr11	79305719	79305919	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34073.0	NM_010897	18015.0	Mm.255596	NM_010897	ENSMUSG00000020716	Nf1	AW494271|Dsk9|E030030H24Rik|Mhdadsk9|Nf-1	neurofibromin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-54073712-2	chr10	54073612	54073812	+	819.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008548, intron 2 of 12)	intron (NM_008548, intron 2 of 12)	2084.0	NM_008548	17155.0	Mm.117294	NM_008548	ENSMUSG00000003746	Man1a	Man1a1|PCR1	mannosidase 1, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-154936036-2	chr4	154935936	154936136	+	791.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7959.0	NM_178931	230979.0	Mm.215147	NM_178931	ENSMUSG00000042333	Tnfrsf14	Atar|HveA|Hvem|Tnfrs14	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-53254542-2	chr9	53254442	53254642	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6430.0	NM_029936	77591.0	Mm.133560	NM_029936	ENSMUSG00000053289	Ddx10	4632415A01Rik|AI646054	DEAD (Asp-Glu-Ala-Asp) box polypeptide 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-119779528-4	chr8	119779432	119779632	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1116.0	NM_028883	74347.0	Mm.358759	NM_028883	ENSMUSG00000034105	Tldc1	4632415K11Rik|Kiaa1609	TBC/LysM associated domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-119211438-2	chr2	119211338	119211538	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001164827, exon 5 of 10)	exon (NM_001164827, exon 5 of 10)	-2643.0	NM_139139	69408.0	Mm.222241	NM_139139	ENSMUSG00000034278	Dnajc17	1700025B16Rik|C87112|D9Bwg1371e	DnaJ heat shock protein family (Hsp40) member C17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-52361055-4	chr3	52360957	52361157	+	898.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	92720.0	NM_019739	56458.0	Mm.29891	NM_019739	ENSMUSG00000044167	Foxo1	AI876417|Afxh|FKHR|Fkhr1|Foxo1a	forkhead box O1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-38818462-1	chr19	38818362	38818562	+	638.0	f1_c57bl6.idr	intron (NM_021315, intron 1 of 20)	intron (NM_021315, intron 1 of 20)	775.0	NM_021315	57753.0	Mm.86482	NM_021315	ENSMUSG00000024999	Noc3l	AF233884|Fad24	NOC3 like DNA replication regulator	protein-coding	-0.464971477092494	-0.453016866751114	-0.280125158263218	-0.459960980680392	-0.464226669319315	-0.452132129649899	0.223137868174215	-0.152450378343232	2.61776765075451	0.304218546125591	1
Merged-chr12-80279637-4	chr12	80279554	80279754	+	961.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-19273.0	NM_001346669	109711.0	Mm.253564	NM_134156	ENSMUSG00000015143	Actn1	3110023F10Rik|Actn1a	actinin, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64963786-2	chr5	64963686	64963886	+	600.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-3690.0	NM_011604	21899.0	Mm.42146	NM_011604	ENSMUSG00000051498	Tlr6	-	toll-like receptor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-83859128-2	chr12	83859028	83859228	+	937.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_073564, intron 2 of 12)	ORR1A2-int|LTR|ERVL-MaLR	-16770.0	NM_010949	18222.0	Mm.4390	NM_010949	ENSMUSG00000021224	Numb	Nb	NUMB endocytic adaptor protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117900860-2	chr10	117900757	117900957	+	639.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24602.0	NR_045342	71067.0	Mm.410793	NR_045342	ENSMUSG00000112500	4933411E08Rik	-	RIKEN cDNA 4933411E08 gene	ncRNA	0.240930786999248	0.260790715980349	0.70955777894737	0.675448922650548	0.242171831180629	0.884338383996646	0.255723289089596	0.681449779409423	0.360114779047482	0.852900511653211	1
Merged-chr2-14073198-1	chr2	14073098	14073298	+	577.0	f0_balb.idr	promoter-TSS (NM_001356337)	promoter-TSS (NM_001356337)	736.0	NR_038162	70957.0	Mm.399049	NR_038162	ENSMUSG00000086657	Stamos	4921530L18Rik	signal transducing adaptor molecule (SH3 domain and ITAM motif) 1, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120715407-2	chr11	120715307	120715507	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153545, intron 4 of 17)	intron (NM_153545, intron 4 of 17)	1454.0	NM_153545	217366.0	Mm.347545	NM_153545	ENSMUSG00000025145	Lrrc45	BC023296	leucine rich repeat containing 45	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-25353267-2	chr2	25353167	25353367	+	627.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_031843, intron 10 of 12)	intron (NM_031843, intron 10 of 12)	3065.0	NM_031843	83768.0	Mm.21440	NM_031843	ENSMUSG00000026958	Dpp7	DPPII|Dpp2|QPP	dipeptidylpeptidase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-68059963-3	chr7	68059862	68060062	+	909.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010513, intron 2 of 20)	intron (NM_010513, intron 2 of 20)	107705.0	NM_010513	16001.0	Mm.275742	NM_010513	ENSMUSG00000005533	Igf1r	A330103N21Rik|CD221|D930020L01|IGF-1R|hyft	insulin-like growth factor I receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-180589390-4	chr2	180589395	180589595	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031373)	promoter-TSS (NM_031373)	88.0	NM_031373	72075.0	Mm.250418	NM_031373	ENSMUSG00000049401	Ogfr	2010013E17Rik	opioid growth factor receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-24987539-4	chr19	24987439	24987639	+	998.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR78|LTR|ERV1	-11990.0	NM_028785	76088.0	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	2.49987681444778	2.58586774553486	2.1040092406324	2.04909765471166	2.6801416868532	2.18735823621329	2.40198928635621	2.88568572993066	0.533822000972224	0.500433847276098	0.938059363548374
Merged-chr3-95818193-3	chr3	95818088	95818288	+	783.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081293, intron 1 of 10)	intron (NM_001081293, intron 1 of 10)	765.0	NM_001081293	75137.0	Mm.196275	NM_028328	ENSMUSG00000028106	Rprd2	2810036A19Rik|4930535B03Rik|6720469I21Rik|AL022841|AL022940|AU021304|BB077382|mKIAA0460	regulation of nuclear pre-mRNA domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-50109535-3	chr6	50109426	50109626	+	881.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164734)	promoter-TSS (NM_001164734)	-715.0	NM_019939	56524.0	Mm.41288	NM_008016	ENSMUSG00000038388	Mpp6	P55t|Pals2	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27039436-2	chr2	27039336	27039536	+	649.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11438.0	NM_001177627	227659.0	Mm.41203	NM_172659	ENSMUSG00000036067	Slc2a6	A330096C23|F630103L12Rik|Glut6|Glut9	solute carrier family 2 (facilitated glucose transporter), member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150099050-3	chr4	150098948	150099148	+	767.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177366, intron 2 of 3)	intron (NM_177366, intron 2 of 3)	11545.0	NM_177366	269604.0	Mm.219307	NM_177366	ENSMUSG00000047875	Gpr157	F730108M23Rik	G protein-coupled receptor 157	protein-coding	0.511195175749982	0.366029542071374	0.355184900856652	0.346682390660145	1.02183253653005	0.368447926992382	1.60422449319784	0.867085012786607	3.89948042981331	0.0293592128688106	0.233692062804062
Merged-chr9-83365800-2	chr9	83365700	83365900	+	666.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-65747.0	NR_102437	100039186.0	Mm.212721	NR_102437	ENSMUSG00000099718	Gm2087	-	predicted gene 2087	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-66849794-2	chr15	66849694	66849894	+	619.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_009375, intron 47 of 47)	intron (NM_009375, intron 47 of 47)	-17965.0	NM_009192	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-96697115-4	chr15	96697023	96697223	+	875.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355633, intron 3 of 14)	intron (NM_001355633, intron 3 of 14)	2605.0	NM_001355633	67760.0	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-152781262-3	chr2	152781158	152781358	+	782.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_149254, exon 2 of 2)	non-coding (NR_149254, exon 2 of 2)	27085.0	NM_053091	84682.0	Mm.196668	NM_053091	ENSMUSG00000009876	Cox4i2	Cox4b|CoxIV-2	cytochrome c oxidase subunit 4I2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118135429-4	chr11	118135340	118135540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-6221.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-29000631-4	chr17	29000531	29000731	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357173, intron 1 of 13)	MTE2a|LTR|ERVL-MaLR	7364.0	NM_134115	106504.0	Mm.439986	NM_134115	ENSMUSG00000024006	Stk38	5830476G13Rik|9530097A09Rik|AA617404|Ndr1	serine/threonine kinase 38	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167678998-2	chr2	167678898	167679098	+	972.375	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9917.0	NM_009883	12608.0	Mm.439656	NM_009883	ENSMUSG00000056501	Cebpb	C/EBPbeta|CRP2|IL-6DBP|LAP|LIP|NF-IL6|NF-M|Nfil6	CCAAT/enhancer binding protein (C/EBP), beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-181545585-3	chr1	181545488	181545688	+	906.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34137.0	NM_207280	403180.0	Mm.220754	NM_207280	ENSMUSG00000050625	Ccdc121	6530421E24Rik|Gm755	coiled-coil domain containing 121	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69017250-2	chr11	69017150	69017350	+	768.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001281465, intron 1 of 22)	intron (NM_001281465, intron 1 of 22)	1339.0	NM_001013256	68964.0	Mm.285785	NM_001013256	ENSMUSG00000020898	Ctc1	1500010J02Rik|AAF-132|AAF132	CTS telomere maintenance complex component 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-96503467-3	chr10	96503361	96503561	+	608.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-113540.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-118306053-2	chr12	118305953	118306153	+	588.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4613.0	NM_001166385	20688.0	Mm.34699	NM_009239	ENSMUSG00000025323	Sp4	5730497N03Rik|HF-1b|HF1-b	trans-acting transcription factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28283405-3	chr17	28283301	28283501	+	877.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011145, intron 2 of 7)	intron (NM_011145, intron 2 of 7)	-9779.0	NR_039557	100628577.0		NR_039557	ENSMUSG00000093061	Mir5098	mmu-mir-5098|mu-mir-5098	microRNA 5098	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-78666158-4	chr1	78666039	78666239	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001136226, exon 4 of 4)	exon (NM_001136226, exon 4 of 4)	7699.0	NM_001136226	195434.0	Mm.276016	NM_001001981	ENSMUSG00000079470	Utp14b	4932411L21Rik|jsd	UTP14B small subunit processome component	protein-coding	4.28382535613204	3.58253301143711	2.81097441955883	3.44764436290762	3.74037403048096	3.07646667175	3.30773767719644	3.3843637656376	-0.372037868148825	0.518914692299711	0.947641799425091
Merged-chr5-96948979-3	chr5	96948877	96949077	+	896.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27705.0	NR_131152	666266.0	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	1.55046957144121	0.910020834817195	0.893441104924858	1.64356342680886	1.45864055216082	0.913706537057159	1.71220823280815	2.01263158615837	0.968757676924302	0.471366835339766	0.926112329215041
Merged-chr10-40310396-4	chr10	40310290	40310490	+	957.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-8202.0	NM_009665	11702.0	Mm.253533	NM_009665	ENSMUSG00000075232	Amd1	AdoMetDC|Amd-1|SAMDC|SAMDC 1|adoMetDC1	S-adenosylmethionine decarboxylase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-61647281-4	chr18	61647154	61647354	+	806.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_029557)	TTS (NR_029557)	640.0	NR_029557	387163.0		NR_029557	ENSMUSG00000065592	Mir145a	Mir145|Mirn145|mir-145a|mmu-mir-145|mmu-mir-145a	microRNA 145a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-37775934-1	chr13	37775834	37776034	+	673.0	f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-50104.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5571995-4	chr19	5571872	5572072	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001033448)	TTS (NM_001033448)	3948.0	NM_001033448	381201.0	Mm.441906	NM_001033448	ENSMUSG00000049562	Ap5b1	Gm962|beta-5	adaptor-related protein complex 5, beta 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-113664775-2	chr8	113664675	113664875	+	858.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11683.0	NR_136914	102631810.0	Mm.412563	NR_136914	ENSMUSG00000110582	Gm30052	-	predicted gene, 30052	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-94600895-2	chr11	94600795	94600995	+	854.9166869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_153807, intron 1 of 15)	intron (NM_153807, intron 1 of 15)	891.0	NM_153807	264895.0	Mm.386885	NM_153807	ENSMUSG00000076435	Acsf2	-	acyl-CoA synthetase family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-99939473-4	chr13	99939370	99939570	+	680.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LFSINE_Vert|SINE|tRNA	-38787.0	NM_001081493	27220.0	Mm.75498	NM_013732	ENSMUSG00000021647	Cartpt	Cart	CART prepropeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-19580940-3	chr10	19580827	19581027	+	650.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11022.0	NM_010511	15979.0	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101359760-1	chr7	101359660	101359860	+	771.0	f1_balb.idr	intron (NM_001040111, intron 1 of 33)	ID4|SINE|ID	11691.0	NM_001040111	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-7925643-2	chr15	7925543	7925743	+	560.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081402, intron 10 of 17)	intron (NM_001081402, intron 10 of 17)	110093.0	NM_001301357	14573.0	Mm.4679	NM_010275	ENSMUSG00000022144	Gdnf	AI385739|ATF	glial cell line derived neurotrophic factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-40926197-4	chr8	40926083	40926283	+	872.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026840)	promoter-TSS (NM_026840)	-50.0	NM_026840	68797.0	Mm.284246	NM_026840	ENSMUSG00000031595	Pdgfrl	1110039P19Rik|AV013190	platelet-derived growth factor receptor-like	protein-coding	2.69672258914588	2.80016428721765	2.92567340817023	3.18176355215163	3.24292707572044	3.14899553819331	3.04559674741155	1.55347040887341	-0.0152445651955164	0.983757785349444	0.998431161219273
Merged-chr3-90313543-3	chr3	90313446	90313646	+	802.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-28108.0	NM_139304	229542.0	Mm.270999	NM_139304	ENSMUSG00000042390	Gatad2b	AL118180|C430014D17Rik|P66beta|mKIAA1150	GATA zinc finger domain containing 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135438089-3	chr4	135437979	135438179	+	816.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CTG)n|Simple_repeat|Simple_repeat	-4274.0	NM_022980	53902.0	Mm.331970	NM_022980	ENSMUSG00000059713	Rcan3	AU041093|Csp3|Dscr1l2	regulator of calcineurin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-53216596-3	chr15	53216507	53216707	+	956.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	129576.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-135947595-3	chr6	135947482	135947682	+	982.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008171, intron 4 of 14)	intron (NM_008171, intron 4 of 14)	225929.0	NM_008171	14812.0	Mm.436649	NM_008171	ENSMUSG00000030209	Grin2b	AW490526|GluN2B|NR2B|Nmdar2b	glutamate receptor, ionotropic, NMDA2B (epsilon 2)	protein-coding	3.98034202407209	3.44266059767507	2.33750954846532	3.22486542831474	1.09278314117385	2.2879708359563	1.21711865111198	1.1684743352974	-3.96410046600399	7.61555366100686e-05	0.00248291882675979
Merged-chr6-114893547-2	chr6	114893447	114893647	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356371, intron 2 of 5)	intron (NM_001356371, intron 2 of 5)	28274.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-113646478-2	chr13	113646378	113646578	+	642.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17198.0	NM_019960	56534.0	Mm.41410	NM_019960	ENSMUSG00000051456	Hspb3	2310035K17Rik|AI844863|Hsbp3|spb3	heat shock protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-62847634-2	chr5	62847526	62847726	+	630.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001170705, intron 6 of 8)	intron (NM_001170705, intron 6 of 8)	33803.0	NM_001170705	100322896.0	Mm.479821	NM_001170705	ENSMUSG00000090326	Dthd1	Gm17384	death domain containing 1	protein-coding	-0.735460677824181	-1.07239125569278	-1.0830811932343	-0.932592354733485	-1.09182165582818	-1.0700747016334	-1.08066122569166	-0.930083472397421	-1.46420606928321	0.629503128178758	1
Merged-chr12-34783824-4	chr12	34783730	34783930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271386, intron 3 of 27)	intron (NM_001271386, intron 3 of 27)	133265.0	NM_001271386	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	4.32902801712939	3.81640436846033	2.86851413266375	3.58981306067196	4.00689830543406	3.49005795366553	3.37267694910754	3.74891105271315	-0.114457825397492	0.831868431144061	0.998431161219273
Merged-chr4-117127208-4	chr4	117127163	117127363	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175030, intron 2 of 3)	intron (NM_175030, intron 2 of 3)	450.0	NM_175030	242646.0	Mm.358914	NM_175030	ENSMUSG00000047671	Tctex1d4	4833401D15Rik	Tctex1 domain containing 4	protein-coding	3.00225835090821	3.79112401147109	2.92721465297342	3.16769889450333	3.99376533523672	3.39841838007002	3.76484603304739	3.08438191353264	0.546117370116702	0.339618009878505	0.8404816361953
Merged-chr18-35554337-2	chr18	35554237	35554437	+	944.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_035472)	promoter-TSS (NR_035472)	-230.0	NR_035472	100316700.0		NR_035472	ENSMUSG00000105743	Mir1949	mir-1949|mmu-mir-1949	microRNA 1949	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-115318725-2	chr10	115318625	115318825	+	904.1666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3134.0	NM_024454	216344.0	Mm.21936	NM_024454	ENSMUSG00000020132	Rab21	9630024B22	RAB21, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-146498027-2	chr4	146497927	146498127	+	722.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-3973.0	NM_001243138	100041433.0	Mm.441741	NM_001243138	ENSMUSG00000056300	Zfp981	Gm13247	zinc finger protein 981	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-66918639-4	chr10	66918521	66918721	+	917.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_138560, exon 2 of 5)	non-coding (NR_138560, exon 2 of 5)	1763.0	NR_138560	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-110768614-4	chr7	110768575	110768775	+	809.68335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276301, intron 1 of 14)	CpG	469.0	NM_001276301	11717.0	Mm.3238	NM_009667	ENSMUSG00000005686	Ampd3	-	adenosine monophosphate deaminase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126458515-2	chr7	126458415	126458615	+	636.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007504, intron 5 of 22)	intron (NM_007504, intron 5 of 22)	4558.0	NM_007504	11937.0	Mm.35134	NM_007504	ENSMUSG00000030730	Atp2a1	SERCA1	ATPase, Ca++ transporting, cardiac muscle, fast twitch 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-106314856-1	chr9	106314756	106314956	+	778.0	f0_balb.idr	intron (NM_027354, intron 9 of 10)	intron (NM_027354, intron 9 of 10)	33795.0	NM_027354	70235.0	Mm.23054	NM_027354	ENSMUSG00000023345	Poc1a	2510040D07Rik|Wdr51a|cha	POC1 centriolar protein A	protein-coding	0.545118975734323	0.289472724362659	0.282267812070077	0.276687631404857	1.02032107525835	0.663216761079852	0.283859528357585	0.934858854706644	2.82479424002028	0.147357625108326	1
Merged-chr15-88026255-1	chr15	88026155	88026355	+	848.0	f0_balb.idr	Intergenic	ORR1E-int|LTR|ERVL-MaLR	-230312.0	NR_105817	102465209.0		NR_105817	ENSMUSG00000098938	Mir6393	Gm27424|mmu-mir-6393	microRNA 6393	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-144381175-4	chr3	144381117	144381317	+	818.81665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-175962.0	NM_010723	16911.0	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-61405970-2	chr14	61405870	61406070	+	746.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008466, intron 1 of 16)	L1MD|LINE|L1	33977.0	NM_008466	16648.0	Mm.25548	NM_008466	ENSMUSG00000021929	Kpna3	IPOA4	karyopherin (importin) alpha 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-64161781-4	chr13	64161687	64161887	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019986)	promoter-TSS (NM_019986)	-79.0	NM_019986	56541.0	Mm.40989	NM_019986	ENSMUSG00000021476	Habp4	4933413D03Rik|4933428J01Rik	hyaluronic acid binding protein 4	protein-coding	5.49147623413141	5.38929099531656	6.8958781170731	5.62139808752633	5.69859094887754	6.03225470150717	6.95555900489914	5.54415428783576	0.189210317931339	0.723236125497922	0.998431161219273
Merged-chr16-91728738-4	chr16	91728620	91728820	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133679)	promoter-TSS (NM_133679)	82.0	NM_026994	66609.0	Mm.109823	NM_026994	ENSMUSG00000058240	Cryzl1	2210407J23Rik|2410006O11Rik|QOH-1	crystallin, zeta (quinone reductase)-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-7693184-3	chr6	7693049	7693249	+	973.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_012055)	promoter-TSS (NM_012055)	33.0	NM_012055	27053.0	Mm.2942	NM_012055	ENSMUSG00000029752	Asns	-	asparagine synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-23005836-4	chr2	23005720	23005920	+	831.258301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077190, intron 1 of 10)	MLTR25A|LTR|ERVK	34421.0	NM_001077192	11308.0	Mm.205647	NM_007380	ENSMUSG00000058835	Abi1	E3B1|NAP1|Ssh3bp1|abi-1	abl-interactor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-65128041-4	chr16	65127952	65128152	+	872.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-22268.0	NM_008310	15557.0	Mm.5040	NM_008310	ENSMUSG00000050783	Htr1f	Htr1eb	5-hydroxytryptamine (serotonin) receptor 1F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-80157833-2	chr12	80157733	80157933	+	826.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24989.0	NR_033514	69548.0	Mm.269712	NR_033514		2310015A10Rik	5330419I17Rik	RIKEN cDNA 2310015A10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-97486036-4	chr13	97485868	97486068	+	769.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110430, intron 2 of 2)	intron (NR_110430, intron 2 of 2)	3267.0	NR_110431	100039691.0	Mm.219358	NR_110430	ENSMUSG00000078952	Lncenc1	Gm11019|Gm2373|Lincenc1|Platr18|linc-Enc1	long non-coding RNA, embryonic stem cells expressed 1	ncRNA	-0.745249309837815	-0.887777517003299	-0.89604999101388	-0.898804750886225	-0.902713206050012	-0.101932974233037	-0.895264164731359	-0.89832284198784	2.33843308823811	0.429799017594191	1
Merged-chr13-74649321-1	chr13	74649221	74649421	+	556.0	f1_c57bl6.idr	intron (NM_030711, intron 2 of 18)	Lx4A|LINE|L1	9468.0	NM_030711	80898.0	Mm.83526	NM_030711	ENSMUSG00000021583	Erap1	A-LAP|ARTS-1|Arts1|ERAAP|PILSA|PILSAP	endoplasmic reticulum aminopeptidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30657922-4	chr2	30657844	30658044	+	923.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_136917)	TTS (NR_136917)	20067.0	NR_136917	665635.0	Mm.450149	NR_136917		Gm14486	-	predicted gene 14486	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-24423711-4	chr5	24423596	24423796	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007668)	promoter-TSS (NM_007668)	-166.0	NM_007668	12568.0	Mm.298798	NM_007668	ENSMUSG00000028969	Cdk5	AW048668|Crk6	cyclin-dependent kinase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-98117352-2	chr7	98117252	98117452	+	700.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008663, intron 2 of 48)	intron (NM_008663, intron 2 of 48)	2141.0	NM_001256081	17921.0	Mm.1403	NM_008663	ENSMUSG00000030761	Myo7a	Hdb|Myo7|USH1B|nmf371|polka|sh-1|sh1	myosin VIIA	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-111249936-2	chr7	111249860	111250060	+	905.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-127285.0	NR_015573	75479.0	Mm.381620	NR_015573	ENSMUSG00000110424	1700012D14Rik	-	RIKEN cDNA 1700012D14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-83866760-2	chr17	83866660	83866860	+	623.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12342.0	NR_155491	320021.0	Mm.379475	NR_155490		C430042M11Rik	-	RIKEN cDNA C430042M11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-136158809-2	chr1	136158718	136158918	+	593.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039472, intron 17 of 34)	B1_Mm|SINE|Alu	27428.0	NR_153829	16565.0	Mm.276135	NM_019962	ENSMUSG00000041642	Kif21b	2610511N21Rik|mKIAA0449	kinesin family member 21B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-60819632-2	chr13	60819532	60819732	+	572.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16788.0	NM_027344	70202.0	Mm.158337	NM_027344	ENSMUSG00000056728	Ctsll3	2310051M13Rik	cathepsin L-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-14237545-1	chr2	14237445	14237645	+	568.0	f0_balb.idr	intron (NM_008625, intron 1 of 29)	intron (NM_008625, intron 1 of 29)	8131.0	NM_008625	17533.0	Mm.2019	NM_008625	ENSMUSG00000026712	Mrc1	AW259686|CD206|MR	mannose receptor, C type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4048070-3	chr19	4047986	4048186	+	831.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5865.0	NM_181796	14869.0	Mm.441542	NM_181796	ENSMUSG00000038155	Gstp2	GSTpiA|Gst-3|Gst3	glutathione S-transferase, pi 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-62913697-7	chr9	62913612	62913812	+	976.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019663, intron 6 of 13)	MIRc|SINE|MIR	-51688.0	NR_003965	677044.0	Mm.422004	NR_003965	ENSMUSG00000074250	Gm10653	-	ribsomal protein S2 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-11123772-4	chr4	11123681	11123881	+	992.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_151526)	promoter-TSS (NR_151526)	-177.0	NR_151526	100503518.0	Mm.102270	NR_151526	ENSMUSG00000086765	Gm11827	-	predicted gene 11827	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69058434-4	chr11	69058230	69058430	+	962.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-1445.0	NM_028005	71923.0	Mm.340257	NM_028005	ENSMUSG00000045176	Borcs6	2310047M10Rik	BLOC-1 related complex subunit 6	protein-coding	0.500078999290453	0.646101057190185	1.10356104300332	0.0873642296317406	0.0789994207181782	0.102451216198926	0.0948958857811087	0.0883918404233102	-4.26647427932442	0.0373001963655146	1
Merged-chr3-16025247-4	chr3	16025202	16025402	+	927.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPEY4_LTR|LTR|ERVK	-18970.0	NM_001081687	381484.0	Mm.217376	NM_001081687	ENSMUSG00000078780	Gm5150	-	predicted gene 5150	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-20966950-4	chr9	20966855	20967055	+	908.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010333, exon 2 of 2)	3' UTR (NM_010333, exon 2 of 2)	-7067.0	NM_001199432	13433.0	Mm.128580	NM_010066	ENSMUSG00000004099	Dnmt1	Cxxc9|Dnmt|Dnmt1o|MCMT|MTase|Met-1|Met1|MommeD2|m.MmuI	DNA methyltransferase (cytosine-5) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-44403258-1	chr13	44403158	44403358	+	793.0	f1_balb.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-36469.0	NR_045489	69491.0	Mm.392410	NR_045489	ENSMUSG00000098144	1700029N11Rik	-	RIKEN cDNA 1700029N11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-124139212-2	chr3	124139112	124139312	+	663.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-181825.0	NM_146140	229801.0	Mm.165810	NM_146140	ENSMUSG00000044528	Tram1l1	A830091N21Rik	translocation associated membrane protein 1-like 1	protein-coding	-2.18233058068552	-2.15536956715525	-2.16352280018114	-2.04193253143548	-2.18043796738662	-2.15360272754651	-2.16167708693786	-2.16902129354933	-0.683654500252594	0.846597994014493	1
Merged-chr15-89067890-2	chr15	89067790	89067990	+	852.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001002005, exon 2 of 3)	exon (NM_001002005, exon 2 of 3)	7964.0	NR_040417	69120.0	Mm.276391	NR_040417	ENSMUSG00000087331	1810021B22Rik	-	RIKEN cDNA 1810021B22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153791605-4	chr2	153791512	153791712	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_036629, intron 5 of 7)	intron (NR_036629, intron 5 of 7)	10733.0	NR_036629	100504221.0	Mm.246778	NM_177849	ENSMUSG00000044083	Efcab8	A630008I04|EG329541	EF-hand calcium binding domain 8	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97151648-4	chr11	97151499	97151699	+	840.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1887.0	NM_198100	73174.0	Mm.27882	NM_198100	ENSMUSG00000038517	Tbkbp1	3110043L15Rik|ProSAPiP2|SINTBAD	TBK1 binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-14755093-1	chr1	14754993	14755193	+	546.0	f1_c57bl6.idr	intron (NM_001360810, intron 1 of 2)	intron (NM_001360810, intron 1 of 2)	873.0	NM_001360810	17681.0	Mm.5820	NM_010827	ENSMUSG00000025930	Msc	MyoR|bHLHa22	musculin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-50207757-2	chr11	50207657	50207857	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290769, intron 2 of 7)	intron (NM_001290769, intron 2 of 7)	3063.0	NM_001290769	18412.0	Mm.40828	NM_011018	ENSMUSG00000015837	Sqstm1	A170|OSF-6|Osi|STAP|STONE14|p62	sequestosome 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-64197992-4	chr15	64197879	64198079	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 4 of 28)	intron (NM_001276461, intron 4 of 28)	114694.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	5.10728296586852	4.7804516676492	5.05967514257028	5.6517030277412	4.84393443952492	4.86368683668659	5.13115016815377	5.27962276847282	-0.178019258692964	0.581602740344455	0.966599221005409
Merged-chr3-105836207-3	chr3	105836097	105836297	+	839.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20630.0	NR_045845	433637.0	Mm.331285	NR_045845	ENSMUSG00000104835	Gm5547	EG433637	predicted gene 5547	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-3647985-4	chr5	3647869	3648069	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026033)	promoter-TSS (NM_026033)	-33.0	NM_026033	67210.0	Mm.178424	NM_026033	ENSMUSG00000007415	Gatad1	2310031E19Rik|2810047M21Rik|8430439A17Rik|9130430G15Rik|B330017N08Rik|Odag	GATA zinc finger domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-122008330-3	chr10	122008291	122008491	+	624.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081037, intron 1 of 21)	intron (NM_001081037, intron 1 of 21)	38924.0	NM_001242411	117600.0	Mm.288698	NM_001081037	ENSMUSG00000020121	Srgap1	4930572H05Rik|Arhgap13	SLIT-ROBO Rho GTPase activating protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-148752067-3	chr2	148751975	148752175	+	601.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177655, intron 2 of 3)	intron (NM_177655, intron 2 of 3)	1714.0	NM_177655	228756.0	Mm.189390	NM_177655	ENSMUSG00000055177	Cstl1	RCET1|RCET2|RCET3	cystatin-like 1	protein-coding	1.27201790823135	0.782681741554904	1.50207639675569	1.45280549052752	0.913353507444767	0.785330343005767	1.13917226861661	1.46150856069518	-0.749364961976396	0.589962055943098	0.969019541919132
Merged-chr1-92974313-4	chr1	92974184	92974384	+	883.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001104529, intron 1 of 1)	intron (NM_001104529, intron 1 of 1)	-1063.0	NM_001271766	64095.0	Mm.152780	NM_022320	ENSMUSG00000026271	Gpr35	KPG_007	G protein-coupled receptor 35	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-155012941-2	chr4	155012855	155013055	+	730.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356470, intron 1 of 22)	intron (NM_001356470, intron 1 of 22)	-1971.0	NM_001113360	269615.0	Mm.379458	NM_175556	ENSMUSG00000029055	Plch2	A930027K05Rik|PLCeta2|Plc-eta2|Plcl4	phospholipase C, eta 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-82509815-2	chr18	82509715	82509915	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025245, intron 2 of 3)	intron (NM_001025245, intron 2 of 3)	34692.0	NM_010777	17196.0	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30178513-4	chr2	30178417	30178617	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172660)	promoter-TSS (NM_172660)	-58.0	NM_172660	227695.0	Mm.4449	NM_172660	ENSMUSG00000039660	Spout1	9930028P05|AL033358|CENP-32|D2Wsu81e	SPOUT domain containing methyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-117936084-4	chr6	117936008	117936208	+	938.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033648, intron 2 of 8)	intron (NM_033648, intron 2 of 8)	1227.0	NM_001173372	108017.0	Mm.250392	NM_033648	ENSMUSG00000004988	Fxyd4	0610008I02Rik|AI267073|Chif	FXYD domain-containing ion transport regulator 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33781670-2	chr16	33781570	33781770	+	592.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12367.0	NM_010739	17063.0	Mm.3177	NM_010739	ENSMUSG00000022824	Muc13	114/A10|14/A10|AI159736|Lrrp|Ly64|NJ-1	mucin 13, epithelial transmembrane	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133461064-1	chr4	133460964	133461164	+	675.0	f1_c57bl6.idr	Intergenic	Intergenic	-19069.0	NM_175307	100342.0	Mm.204656	NM_175307	ENSMUSG00000046694	Fam46b	4732473B16Rik|AU045678|AU046069	family with sequence similarity 46, member B	protein-coding	0.156676525656776	0.175517243718557	0.624870593630936	0.698453376650619	0.157854937267687	0.374119670372731	0.170713039420521	0.802758945463241	-0.197265838642361	0.921890106517399	1
Merged-chr17-5566251-4	chr17	5566149	5566349	+	960.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	MTE2a|LTR|ERVL-MaLR	73649.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-50928723-2	chr14	50928623	50928823	+	549.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033271, intron 6 of 6)	intron (NM_001033271, intron 6 of 6)	2126.0	NM_001310506	219024.0	Mm.239117	NM_001033271	ENSMUSG00000035953	Tmem55b	BC039161|Pip4p1	transmembrane protein 55b	protein-coding	-1.84297643846673	-1.8130099360596	-1.82207205372894	-1.6869274651563	-1.84087284540582	-1.81104613735712	-1.82002058892457	-1.6855950118199	0.037684011990387	0.991491645451152	1
Merged-chr12-3355246-4	chr12	3355110	3355310	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-9922.0	NM_008445	16570.0	Mm.7688	NM_008445	ENSMUSG00000020668	Kif3c	mKIAA4058	kinesin family member 3C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-79886394-2	chr10	79886294	79886494	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015779)	promoter-TSS (NM_015779)	82.0	NM_015779	50701.0	Mm.262194	NM_015779	ENSMUSG00000020125	Elane	Ela2|F430011M15Rik|NE	elastase, neutrophil expressed	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30660218-2	chr2	30660118	30660318	+	988.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_136917, intron 2 of 3)	MIRc|SINE|MIR	17793.0	NR_136917	665635.0	Mm.450149	NR_136917		Gm14486	-	predicted gene 14486	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16207238-3	chr7	16207052	16207252	+	996.7999880000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027883, intron 7 of 16)	intron (NM_027883, intron 7 of 16)	14841.0	NM_001285931	71723.0	Mm.75259	NM_027883	ENSMUSG00000006019	Dhx34	1200013B07Rik|1810012L18Rik|Ddx34|mKIAA0134	DEAH (Asp-Glu-Ala-His) box polypeptide 34	protein-coding	3.1041848321517	3.3173884140263	3.83583758924636	3.83622852028094	2.54793794830455	1.62373678244598	3.86441566417619	1.78995833688521	-1.21652307495925	0.114547082590025	0.530743892265557
Merged-chr10-69217352-4	chr10	69217267	69217467	+	883.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252638, intron 2 of 11)	intron (NM_001252638, intron 2 of 11)	4173.0	NM_001252638	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69995068-4	chr11	69994963	69995163	+	997.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291125)	promoter-TSS (NM_001291125)	-703.0	NM_001291125	78246.0	Mm.20805	NM_030064	ENSMUSG00000018572	Phf23	JUNE-1	PHD finger protein 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-23538931-4	chr17	23538825	23539025	+	869.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11874.0	NR_126485	320020.0	Mm.445111	NR_126484		6330415G19Rik	-	RIKEN cDNA 6330415G19 gene	ncRNA	3.20711546762961	2.84651108570919	3.52583853969069	1.94425881642457	3.17446793966394	1.85165920194246	2.52354960875392	2.30136977774415	-0.809336911792705	0.306438349081071	0.806865344318695
Merged-chr15-5133353-2	chr15	5133253	5133453	+	615.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-10508.0	NM_001013367	105787.0	Mm.207004	NM_001013367	ENSMUSG00000050697	Prkaa1	AI194361|AI450832|AL024255|AMPKalpha1|C130083N04Rik	protein kinase, AMP-activated, alpha 1 catalytic subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-143614818-2	chr7	143614702	143614902	+	635.5	f0_balb.idr|f1_balb.idr	intron (NM_175649, intron 5 of 7)	MTC|LTR|ERVL-MaLR	13043.0	NM_175649	244237.0	Mm.247498	NM_175649	ENSMUSG00000045362	Tnfrsf26	Tnfrh3|Tnfrsf24	tumor necrosis factor receptor superfamily, member 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-5605606-4	chr13	5605536	5605736	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	252456.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-122571340-1	chr2	122571240	122571440	+	548.0	f1_balb.idr	Intergenic	Intergenic	39937.0	NM_025961	67092.0	Mm.29975	NM_025961	ENSMUSG00000027199	Gatm	1810003P21Rik|AI314789|AT	glycine amidinotransferase (L-arginine:glycine amidinotransferase)	protein-coding	1.17711862868525	1.33050757159711	1.44627481858195	0.834830689477042	1.33289205246713	2.36606650235536	1.72911267237525	0.837556476803909	1.58227817423279	0.214789967086119	0.705525650237064
Merged-chr7-19093269-4	chr7	19093156	19093356	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_126095, exon 15 of 15)	non-coding (NR_126095, exon 15 of 15)	-1288.0	NM_011383	20475.0	Mm.3410	NM_011383	ENSMUSG00000040841	Six5	Dmahp|MDMAHP|TrexBF	sine oculis-related homeobox 5	protein-coding	1.92357530921006	0.820261706960109	1.6073266007948	0.99690800713836	1.47605794303648	1.68844795912354	0.808425801638555	0.795202921668503	-0.574914279021156	0.687981924072361	0.996533206832645
Merged-chr2-3662696-2	chr2	3662596	3662796	+	719.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50762.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-17451950-4	chr16	17451860	17452060	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001277231)	promoter-TSS (NM_001277231)	-25.0	NM_001277231	12929.0	Mm.21048	NM_007764	ENSMUSG00000006134	Crkl	1110025F07Rik|AA589403|AI325100|Crkol	v-crk avian sarcoma virus CT10 oncogene homolog-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-32507033-3	chr6	32506922	32507122	+	712.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175750, intron 2 of 31)	intron (NM_175750, intron 2 of 31)	-4119.0	NR_040277	319849.0	Mm.440860	NR_040277	ENSMUSG00000086763	Plxna4os1	B230378P21Rik	plexin A4, opposite strand 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70945467-4	chr11	70945355	70945555	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083331, intron 10 of 16)	intron (NM_001083331, intron 10 of 16)	24518.0	NM_172394	19069.0	Mm.288962	NM_172394	ENSMUSG00000040667	Nup88	Nup84|Prei2	nucleoporin 88	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-76856207-2	chr11	76856107	76856307	+	955.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1K|LTR|ERVL-MaLR	-9199.0	NM_007754	12874.0	Mm.276736	NM_007754	ENSMUSG00000020841	Cpd	AA960140|AW322530|D830034L15Rik	carboxypeptidase D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-116732954-10	chr8	116732764	116732964	+	999.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_029441, exon 1 of 7)	5' UTR (NM_029441, exon 1 of 7)	127.0	NM_029441	75796.0	Mm.159575	NM_029441	ENSMUSG00000031758	Cdyl2	1700029M19Rik|4930453I21Rik|Gm20194	chromodomain protein, Y chromosome-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-45085358-4	chr14	45085263	45085463	+	842.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	97252.0	NM_008964	19217.0	Mm.4630	NM_008964	ENSMUSG00000037759	Ptger2	EP2|Ptgerep2	prostaglandin E receptor 2 (subtype EP2)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4301375-2	chr19	4301275	4301475	+	635.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290818, intron 1 of 20)	intron (NM_001290818, intron 1 of 20)	4847.0	NM_130863	110355.0	Mm.254144	NM_130863	ENSMUSG00000024858	Grk2	Adrbk-1|Adrbk1|Bark-1|beta ARK|betaARK1	G protein-coupled receptor kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-36061001-3	chr17	36060903	36061103	+	795.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2632.0	NM_001199967	100529082.0	Mm.484641	NM_001199967	ENSMUSG00000079492	Gm11127	-	predicted gene 11127	protein-coding	3.67347092113468	4.09402496852042	3.69766527933881	3.86117996192046	3.44336449033705	3.68542566943402	3.16568541408998	3.7543838316432	-0.455321819712119	0.357300459836107	0.853959579582101
Merged-chr8-111525355-4	chr8	111525265	111525465	+	984.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-3258.0	NM_176923	319481.0	Mm.247294	NM_176923	ENSMUSG00000031959	Wdr59	5430401O09Rik|Cdw12	WD repeat domain 59	protein-coding	3.28339600971092	2.48971969484377	2.40656134340789	3.27248266430592	2.68686143626342	2.65401108918858	3.00414505096863	2.19662776041178	-0.52223433027721	0.469438815013897	0.92494967744746
Merged-chr6-97504946-4	chr6	97504865	97505065	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	-17145.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	4.41695770291476	4.41209416765101	4.48427041662633	3.90738539206358	4.45014059982266	4.44240265115719	4.51633806435232	3.92735989400352	0.0385242674985192	0.923577113465887	0.998431161219273
Merged-chr11-77930941-2	chr11	77930841	77931041	+	753.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001291225, exon 1 of 16)	5' UTR (NM_001291225, exon 1 of 16)	102.0	NM_021286	20370.0	Mm.229330	NM_021286	ENSMUSG00000000632	Sez6	BSRP-C|D11Bhm177e|sez-6	seizure related gene 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16881823-2	chr7	16881723	16881923	+	914.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081655, intron 1 of 3)	B1_Mur1|SINE|Alu	6506.0	NM_001081655	629378.0	Mm.491123	NM_001081655	ENSMUSG00000078794	Dact3	EG666671|naa-3	dishevelled-binding antagonist of beta-catenin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43260380-3	chr4	43260292	43260492	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081413, intron 37 of 39)	intron (NM_001081413, intron 37 of 39)	-6767.0	NM_177195	320571.0	Mm.74465	NM_177195	ENSMUSG00000028457	Atp8b5	4930417M19Rik|Feta	ATPase, class I, type 8B, member 5	protein-coding	1.2307926132911	1.09780715618438	1.05684913352687	1.02338073911926	2.89164505509155	3.3815973241077	2.51779614278136	2.42929583123688	5.42247832385208	1.47991252203831e-05	0.000636874233416821
Merged-chr2-102938270-2	chr2	102938170	102938370	+	564.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-36605.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-60945142-1	chr19	60945042	60945242	+	660.0	f1_c57bl6.idr	intron (NM_018869, intron 1 of 15)	intron (NM_018869, intron 1 of 15)	55393.0	NM_018869	14773.0	Mm.279400	NM_018869	ENSMUSG00000003228	Grk5	Gprk5	G protein-coupled receptor kinase 5	protein-coding	0.703648334554598	0.752231427580262	0.736718724877028	1.86230305298072	1.6079439586333	0.755678727388178	1.57008166108894	1.51096492319174	0.898032648406619	0.55955451106166	0.960321604678676
Merged-chr19-41382864-4	chr19	41382757	41382957	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 1 of 16)	intron (NM_031376, intron 1 of 16)	2213.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-74874681-4	chr17	74874655	74874855	+	958.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-130774.0	NM_019919	268977.0	Mm.269747	NM_019919	ENSMUSG00000001870	Ltbp1	9430031G15Rik|9830146M04|Ltbp-1|Ltbp1L|TGF-beta1-BP-1|Tgfb|b2b1000Clo	latent transforming growth factor beta binding protein 1	protein-coding	-1.35914981169748	-1.4788811654986	-1.48870847347744	-1.49678091685108	-1.5090967730776	-1.16749470945895	-1.48648378635949	-1.49533595334674	0.921594974740572	0.790977103014573	1
Merged-chr15-101197831-2	chr15	101197731	101197931	+	647.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007395, intron 3 of 8)	intron (NM_007395, intron 3 of 8)	3962.0	NR_105927	102466774.0		NR_105927	ENSMUSG00000106563	Mir6962	mmu-mir-6962	microRNA 6962	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127509882-2	chr10	127509782	127509982	+	703.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5057.0	NM_001098789	407790.0	Mm.336856	NM_001098789	ENSMUSG00000040280	Ndufa4l2	BC064011	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24193121-2	chr17	24193025	24193225	+	762.0	f0_c57.idr|f1_c57bl6.idr	intron (NM_001163851, intron 1 of 8)	intron (NM_001163851, intron 1 of 8)	6832.0	NM_001163852	224617.0	Mm.301585	NM_173186	ENSMUSG00000036473	Tbc1d24	9630033P11|C530046L02Rik|mKIAA1171	TBC1 domain family, member 24	protein-coding	3.12233657821706	3.0159828516625	3.09215794664007	4.24940210826846	2.34908342518257	1.69112041240906	1.31054425025899	1.25973605190445	-3.39618584571136	0.00011607089276126	0.00344707567165741
Merged-chr1-191732844-2	chr1	191732744	191732944	+	583.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001134829, intron 2 of 7)	L1MB7|LINE|L1	14449.0	NM_001134829	226856.0	Mm.277958	NM_172266	ENSMUSG00000026623	Lpgat1	AI649174|AW112037|BC013667	lysophosphatidylglycerol acyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107733686-2	chr9	107733586	107733786	+	623.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23211.0	NM_011349	20350.0	Mm.12903	NM_011349	ENSMUSG00000034684	Sema3f	Sema4|Semak	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-25574165-2	chr14	25574065	25574265	+	597.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 4 of 23)	intron (NM_183208, intron 4 of 23)	-12639.0	NR_033492	77592.0	Mm.444871	NM_175264		4931406H21Rik	-	RIKEN cDNA 4931406H21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-82860992-1	chr2	82860892	82861092	+	562.0	f1_balb.idr	Intergenic	Lx5b|LINE|L1	-468790.0	NR_152125	228116.0	Mm.246588	NR_152125	ENSMUSG00000087061	A130030D18Rik	Gm558	RIKEN cDNA A130030D18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-110384639-2	chr7	110384539	110384739	+	683.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177324, intron 17 of 40)	intron (NM_177324, intron 17 of 40)	162936.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99105158-1	chr7	99105058	99105258	+	630.0	f1_c57bl6.idr	intron (NM_178635, intron 3 of 14)	AT_rich|Low_complexity|Low_complexity	35986.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	-0.0628794415792641	1.3697159167229	-0.0411688195513221	-0.0491948442093849	-0.0608139638169415	-0.0287322549515306	-0.0389028691261253	0.777262520790776	-1.27216759660378	0.562718523247056	1
Merged-chr15-58427585-2	chr15	58427485	58427685	+	708.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145959, intron 8 of 23)	intron (NM_145959, intron 8 of 23)	12117.0	NM_145959	210998.0	Mm.3224	NM_145959	ENSMUSG00000037119	Fam91a1	AV220772|BC033609|D15Ertd621e|SKIN|mKIAA0493	family with sequence similarity 91, member A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-49685860-2	chr19	49685760	49685960	+	680.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	992786.0	NM_001252501	58178.0	Mm.313672	NM_021377	ENSMUSG00000043531	Sorcs1	Sorcs|mSorCS	sortilin-related VPS10 domain containing receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-10535033-3	chr14	10534934	10535134	+	728.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360141, intron 4 of 9)	RMER10A|LTR|ERVL	-81576.0	NM_001308286	14198.0	Mm.397619	NM_010210	ENSMUSG00000060579	Fhit	AW045638|Fra14A2	fragile histidine triad gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-125390783-2	chr1	125390692	125390892	+	602.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	44935.0	NM_001205386	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	-1.3599752376502	-1.17122565963343	-1.48876449629253	-1.49679784522241	-1.50905405636673	-1.47686547648293	-1.48655058322419	-1.49535987960481	-2.0793664255897	0.544624818471572	1
Merged-chr2-172369742-2	chr2	172369642	172369842	+	559.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291185, intron 1 of 8)	ID_B1|SINE|B4	828.0	NM_001291185	20878.0	Mm.249363	NM_011497	ENSMUSG00000027496	Aurka	AIRK1|ARK-1|AU019385|AW539821|Ark1|Aurora-A|Ayk1|IAK|IAK1|Stk6	aurora kinase A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117322659-2	chr8	117322559	117322759	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	-26511.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-33557748-3	chr17	33557654	33557854	+	806.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053214, intron 1 of 27)	intron (NM_053214, intron 1 of 27)	2047.0	NM_053214	17916.0	Mm.42019	NM_053214	ENSMUSG00000024300	Myo1f	C330006B10Rik	myosin IF	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-123519382-2	chr8	123519282	123519482	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_018855, intron 1 of 10)	intron (NM_018855, intron 1 of 10)	547.0	NM_018855	104346.0	Mm.117265	NM_018855	ENSMUSG00000040220	Gas8	Gas11	growth arrest specific 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-155200986-4	chr4	155200904	155201104	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011385, intron 1 of 6)	intron (NM_011385, intron 1 of 6)	21531.0	NM_011385	20481.0	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-23884669-4	chr18	23884543	23884743	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162941, intron 7 of 7)	intron (NM_001162941, intron 7 of 7)	-70045.0	NM_027007	69256.0	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118760283-2	chr9	118760183	118760383	+	692.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 1 of 13)	intron (NM_001113514, intron 1 of 13)	48591.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141678287-2	chr4	141678210	141678410	+	855.6666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7406.0	NM_023544	69994.0	Mm.441022	NM_023544	ENSMUSG00000040715	Rsc1a1	1700027M01Rik|Rs1	regulatory solute carrier protein, family 1, member 1	protein-coding	0.300918150675734	0.326755605761343	0.318370381065689	0.311849402204796	1.23583864253076	0.870713492320939	0.518564283246623	0.900120487330729	4.46747640336995	0.0143238162184224	1
Merged-chr12-100684714-4	chr12	100684599	100684799	+	919.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153587, intron 1 of 17)	L1MB2|LINE|L1	40421.0	NM_001330702	73086.0	Mm.220417	NM_153587	ENSMUSG00000021180	Rps6ka5	3110005L17Rik|6330404E13Rik|AI854034|MSK1|MSPK1|RLPK|RLSK|S6K-alpha-5	ribosomal protein S6 kinase, polypeptide 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-73434408-2	chr14	73434308	73434508	+	878.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49119.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-114439924-3	chr7	114439817	114440017	+	793.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011055, intron 1 of 15)	intron (NM_011055, intron 1 of 15)	24663.0	NM_011055	18576.0	Mm.430730	NM_011055	ENSMUSG00000030671	Pde3b	9830102A01Rik|AI847709	phosphodiesterase 3B, cGMP-inhibited	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-21653070-4	chr19	21652988	21653188	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025423)	promoter-TSS (NM_025423)	-221.0	NM_146096	226016.0	Mm.28796	NM_146096	ENSMUSG00000047368	Abhd17b	5730446C15Rik|Cgi67|Fam108b|Fam108b1	abhydrolase domain containing 17B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-20951138-7	chr5	20951082	20951282	+	997.4285890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_030699, exon 1 of 1)	non-coding (NR_030699, exon 1 of 1)	193.0	NR_030699	320770.0	Mm.491217	NR_030699	ENSMUSG00000101013	A630072M18Rik	Aptr	RIKEN cDNA A630072M18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-107179352-1	chr4	107179252	107179452	+	681.0	f0_balb.idr	promoter-TSS (NM_025617)	promoter-TSS (NM_025617)	722.0	NM_029565	56374.0	Mm.291192	NM_029565	ENSMUSG00000028618	Tmem59	1110001M20Rik|3110046P06Rik|AI256529|D4Ertd20e|MTDCF1|ORF18	transmembrane protein 59	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131199392-4	chr1	131199277	131199477	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018750, intron 2 of 5)	intron (NM_018750, intron 2 of 5)	808.0	NM_001311094	54354.0	Mm.248291	NM_018750	ENSMUSG00000026430	Rassf5	1300019G20Rik|Maxp1|Nore1|Nore1A|Nore1B|Rapl	Ras association (RalGDS/AF-6) domain family member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-173401616-4	chr1	173401506	173401706	+	734.145813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18998.0	NM_001013779	383619.0	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	4.69786436923755	3.97776427479574	3.98495631066916	3.8112377053495	3.83373696079624	3.67082501764809	3.87722372607738	3.52505295016302	-0.616233731482467	0.188049866937621	0.666076255712725
Merged-chr15-74982582-1	chr15	74982482	74982682	+	868.0	f1_c57bl6.idr	intron (NM_020498, intron 1 of 2)	intron (NM_020498, intron 1 of 2)	848.0	NM_001358005	57248.0	Mm.358339	NM_020498	ENSMUSG00000022586	Ly6i	AI789751|Ly-6I|Ly-6M	lymphocyte antigen 6 complex, locus I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140766725-2	chr5	140766625	140766825	+	841.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010302, intron 2 of 3)	intron (NM_010302, intron 2 of 3)	42598.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-145029811-4	chr7	145029723	145029923	+	899.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-89898.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	3.58918581674358	2.58028218594818	3.17213095241773	2.42138425344499	2.67739365886962	3.38847775455103	2.90299523274537	2.91735037185879	-0.0849832666403924	0.900013725988051	0.998431161219273
Merged-chr15-38290320-3	chr15	38290227	38290427	+	783.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9573.0	NM_001357677	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-100439292-4	chr3	100439203	100439403	+	970.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12898.0	NR_040543	73806.0	Mm.396549	NR_040543	ENSMUSG00000086923	4930406D18Rik	-	RIKEN cDNA 4930406D18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-22247875-2	chr2	22247775	22247975	+	658.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_148413, intron 3 of 19)	intron (NM_148413, intron 3 of 19)	20372.0	NM_148413	667663.0	Mm.330033	NM_148413	ENSMUSG00000025716	Myo3a	9030416P08Rik	myosin IIIA	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128388167-2	chr2	128388067	128388267	+	617.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_028591, intron 1 of 1)	intron (NR_028591, intron 1 of 1)	41184.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-53889437-2	chr11	53889337	53889537	+	778.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011396, intron 1 of 9)	intron (NM_011396, intron 1 of 9)	2266.0	NM_011396	20520.0	Mm.42253	NM_011396	ENSMUSG00000018900	Slc22a5	Lstpl|Octn2|jvs	solute carrier family 22 (organic cation transporter), member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-90301092-4	chr16	90300986	90301186	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16583.0	NM_178923	224432.0	Mm.439811	NM_178923	ENSMUSG00000022983	Scaf4	AA517739|Sfrs15|Sra4|Srsf15	SR-related CTD-associated factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-164868151-2	chr2	164868059	164868259	+	963.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M5|LINE|L1	-10451.0	NM_011125	18830.0	Mm.6105	NM_011125	ENSMUSG00000017754	Pltp	Bpife|OD107	phospholipid transfer protein	protein-coding	1.7370500132486	1.96252820506344	2.0855815310737	3.61825606028135	2.44699315391106	2.35327393018504	3.26134023389153	2.19570735404986	0.0225352648331527	0.979362461773457	0.998431161219273
Merged-chr11-119524654-4	chr11	119524547	119524747	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	23173.0	NM_008730	18164.0	Mm.5142	NM_008730	ENSMUSG00000025582	Nptx1	D11Bwg1004e|Np1	neuronal pentraxin 1	protein-coding	3.67305516686797	3.82154499175453	3.61982115311269	3.66778433978773	4.29284553512121	3.39121990041623	3.72535243257381	3.17283314138797	0.0514350827142384	0.920545462700693	0.998431161219273
Merged-chr18-53266544-4	chr18	53266442	53266642	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029394, intron 1 of 6)	intron (NM_029394, intron 1 of 6)	20880.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133183437-1	chr4	133183337	133183537	+	989.0	f1_balb.idr	intron (NM_153423, intron 2 of 8)	intron (NM_153423, intron 2 of 8)	-12218.0	NR_105984	102466215.0		NR_105984	ENSMUSG00000099202	Mir7017	Gm27945|mmu-mir-7017	microRNA 7017	ncRNA	1.93097057949377	1.93174959964075	1.36583285499538	2.38515294219152	1.73152867491982	1.16123437949641	1.37462129844212	2.39792053807717	-0.497093536837314	0.650019006550729	0.985422869512088
Merged-chr18-62182449-4	chr18	62182356	62182556	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013754, intron 1 of 1)	intron (NM_001013754, intron 1 of 1)	2356.0	NM_001013754	225609.0	Mm.296917	NM_001013754	ENSMUSG00000054589	Gm9949	EG225609	predicted gene 9949	protein-coding	4.02955655378243	3.74829873749607	5.00269491273493	3.7534233013241	3.90402348651376	3.22080996455112	4.65139252215171	3.53242112673653	-0.407364154748094	0.43595618455701	0.907834077091723
Merged-chr18-57786291-4	chr18	57786173	57786373	+	999.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152225, intron 1 of 2)	intron (NR_152225, intron 1 of 2)	6060.0	NR_152225	100503033.0	Mm.381112	NR_152224		Gm19519	-	predicted gene, 19519	ncRNA	3.78980043468921	3.46977318782505	2.77723247846145	2.91766055867783	2.31485162060638	3.131125119738	2.35098371671242	3.20289688461923	-0.854266051919433	0.204848571839373	0.692253703623242
Merged-chr16-55757708-3	chr16	55757619	55757819	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	64419.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-44378099-4	chr11	44377996	44378196	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21967.0	NM_001303244	16160.0	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34285192-1	chr17	34285092	34285292	+	834.0	f1_c57bl6.idr	intron (NM_010378, intron 1 of 4)	intron (NM_010378, intron 1 of 4)	2579.0	NM_010378	14960.0	Mm.235338	NM_010378	ENSMUSG00000036594	H2-Aa	Aalpha|H-2Aa|H2Aa|I-Aalpha|IAalpha|Ia-1|Ia1	histocompatibility 2, class II antigen A, alpha	protein-coding	4.2240779969363	3.31694253947618	2.29245605635241	4.2256108933437	3.66004907070914	3.80490933485176	3.11280126730552	3.64249904934065	-0.233132029279294	0.697801640492939	0.998087997318924
Merged-chr3-101812670-3	chr3	101812547	101812747	+	743.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_172295)	TTS (NM_172295)	23576.0	NM_172295	242125.0	Mm.32900	NM_172295	ENSMUSG00000044313	Mab21l3	-	mab-21-like 3 (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43005410-2	chr4	43005310	43005510	+	549.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_053081, intron 8 of 13)	intron (NM_053081, intron 8 of 13)	4891.0	NM_001163233	60534.0	Mm.23122	NM_053081	ENSMUSG00000028453	Fancg	AU041407|Xrcc9	Fanconi anemia, complementation group G	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-73687573-4	chr12	73687500	73687700	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008856, intron 2 of 13)	intron (NM_008856, intron 2 of 13)	102804.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-60732541-3	chr18	60732486	60732686	+	982.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001348146, intron 1 of 6)	intron (NM_001348146, intron 1 of 6)	555.0	NM_001348102	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-68417990-4	chr11	68417887	68418087	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11B|LTR|ERVK	-14138.0	NM_177320	320207.0	Mm.244960	NM_177320	ENSMUSG00000020901	Pik3r5	AV230647|F730038I15Rik|Foap2|p101	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-113193228-4	chr7	113193112	113193312	+	910.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14253.0	NM_001243048	11865.0	Mm.33970	NM_007489	ENSMUSG00000055116	Arntl	Arnt3|BMAL1b|Bmal1|MOP3|bHLHe5|bmal1b'	aryl hydrocarbon receptor nuclear translocator-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94991804-1	chr10	94991704	94991904	+	593.0	f0_balb.idr	Intergenic	Intergenic	-47226.0	NM_018797	54712.0	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10277405-4	chr19	10277169	10277369	+	935.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198114, intron 1 of 19)	intron (NM_198114, intron 1 of 19)	27608.0	NM_198114	269060.0	Mm.329718	NM_198114	ENSMUSG00000035735	Dagla	Nsddr	diacylglycerol lipase, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-76154941-2	chr16	76154841	76155041	+	671.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_040575, intron 2 of 2)	intron (NR_040575, intron 2 of 2)	32328.0	NR_040575	78215.0	Mm.243885	NR_040575		4930578N18Rik	-	RIKEN cDNA 4930578N18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-55858644-3	chr13	55858538	55858738	+	834.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27213.0	NM_011097	18740.0	Mm.135195	NM_011097	ENSMUSG00000021506	Pitx1	Bft|P-OTX|Potx|Ptx1	paired-like homeodomain transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-182909817-4	chr1	182909713	182909913	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB3|LINE|L1	-44975.0	NM_016928	53791.0	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-108513875-2	chr9	108513775	108513975	+	859.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133794, intron 16 of 23)	intron (NM_133794, intron 16 of 23)	-3212.0	NM_001114119	69232.0	Mm.335449	NM_175143	ENSMUSG00000006673	Qrich1	2610028H07Rik|b2b2404Clo	glutamine-rich 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-37926165-7	chr18	37926067	37926267	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305981, intron 1 of 28)	intron (NM_001305981, intron 1 of 28)	9309.0	NM_001305981	13367.0	Mm.195916	NM_007858	ENSMUSG00000024456	Diaph1	D18Wsu154e|Dia1|Diap1|Drf1|p140mDia	diaphanous related formin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-8005585-2	chr10	8005485	8005685	+	671.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49462.0	NM_138667	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-72313687-2	chr1	72313587	72313787	+	701.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357519, intron 3 of 20)	MTD|LTR|ERVL-MaLR	6266.0	NM_001357519	22596.0	Mm.246952	NM_009533	ENSMUSG00000026187	Xrcc5	AI314015|CTC85|CTCBF|Ku80|Ku86	X-ray repair complementing defective repair in Chinese hamster cells 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-88873016-2	chr15	88872916	88873116	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6B|LTR|ERVK	10822.0	NM_145478	223775.0	Mm.400129	NM_145478	ENSMUSG00000035828	Pim3	BC026639|Kid1	proviral integration site 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111455309-1	chr12	111455209	111455409	+	563.0	f0_c57.idr	TTS (NM_009396)	TTS (NM_009396)	12648.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-96622522-3	chr10	96622407	96622607	+	898.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007569, exon 2 of 2)	3' UTR (NM_007569, exon 2 of 2)	5506.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4165491-2	chr19	4165391	4165591	+	840.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_134148, exon 10 of 10)	exon (NM_134148, exon 10 of 10)	-2108.0	NR_153659	58988.0	Mm.271937	NM_021485	ENSMUSG00000024830	Rps6kb2	S6K-beta-2|S6K2	ribosomal protein S6 kinase, polypeptide 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-68843535-4	chr2	68843429	68843629	+	803.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17912.0	NM_172856	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-47135859-6	chr19	47135749	47135949	+	919.444458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_133746, exon 2 of 3)	exon (NM_133746, exon 2 of 3)	2445.0	NM_133746	72691.0	Mm.31663	NM_133746	ENSMUSG00000033033	Calhm2	2810048G17Rik|Fam26b	calcium homeostasis modulator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-19851538-3	chr10	19851445	19851645	+	563.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029529)	promoter-TSS (NM_029529)	-86.0	NM_029529	76157.0	Mm.74324	NM_029529	ENSMUSG00000050473	Slc35d3	6230421J19Rik|Frcl1	solute carrier family 35, member D3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-113334911-2	chr6	113334811	113335011	+	562.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_149720)	TTS (NR_149720)	7935.0	NM_010957	18294.0	Mm.43612	NM_010957	ENSMUSG00000030271	Ogg1	Mmh	8-oxoguanine DNA-glycosylase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-94208940-2	chr11	94208840	94209040	+	712.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-2514.0	NM_009427	22057.0	Mm.259673	NM_009427	ENSMUSG00000037573	Tob1	Tob|Trob	transducer of ErbB-2.1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36313551-2	chr1	36313451	36313651	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290726, intron 2 of 7)	intron (NM_001290726, intron 2 of 7)	5818.0	NM_001172205	214855.0	Mm.34316	NM_145996	ENSMUSG00000037447	Arid5a	D430024K22Rik|Mrf1	AT rich interactive domain 5A (MRF1-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-51484275-3	chr10	51484168	51484368	+	856.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008147, intron 6 of 8)	intron (NM_008147, intron 6 of 8)	3656.0	NM_001291892	14727.0	Mm.439661	NM_008147	ENSMUSG00000112023	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-60350938-4	chr10	60350843	60351043	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028732, intron 1 of 6)	intron (NM_028732, intron 1 of 6)	4092.0	NM_028732	74048.0	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-61909940-3	chr8	61909857	61910057	+	871.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7263.0	NM_001293772	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131379691-2	chr1	131379590	131379790	+	666.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081011, intron 4 of 22)	B3|SINE|B2	-100127.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-148906871-1	chr1	148906771	148906971	+	640.0	f0_balb.idr	Intergenic	Intergenic	1015568.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-118134867-3	chr6	118134788	118134988	+	976.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030165, intron 1 of 7)	intron (NM_030165, intron 1 of 7)	3942.0	NM_001362149	78752.0	Mm.300317	NM_030165	ENSMUSG00000042042	Csgalnact2	4632415D10Rik|Galnact2	chondroitin sulfate N-acetylgalactosaminyltransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85336578-2	chr12	85336478	85336678	+	736.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145138, intron 1 of 21)	intron (NM_145138, intron 1 of 21)	2784.0	NM_145138	217718.0	Mm.29071	NM_145138	ENSMUSG00000034290	Nek9	C130021H08Rik	NIMA (never in mitosis gene a)-related expressed kinase 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-87415019-4	chr12	87414948	87415148	+	889.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F1|LTR|ERVL-MaLR	22709.0	NR_037228	100526546.0		NR_037228	ENSMUSG00000105428	Mir3068	mir-3068|mmu-mir-3068	microRNA 3068	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-33983637-4	chr5	33983602	33983802	+	781.958313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310547, intron 1 of 3)	CpG	269.0	NM_001310546	381633.0	Mm.4923	NM_001033458	ENSMUSG00000070858	Gm1673	-	predicted gene 1673	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-106885691-2	chr9	106885591	106885791	+	766.833374	f1_balb.idr|f1_c57bl6.idr	exon (NM_175402, exon 1 of 1)	exon (NM_175402, exon 1 of 1)	1309.0	NM_175402	109095.0	Mm.431589	NM_175402	ENSMUSG00000074102	Rbm15b	1810017N16Rik	RNA binding motif protein 15B	protein-coding	-0.885343988398316	-0.873197811915141	-0.879568534556306	-0.464008891048743	-0.884809499207366	-0.870535133016439	-0.878945546113603	-0.458408536970068	0.0285539633070526	0.992673327504828	1
Merged-chr4-46553952-4	chr4	46553862	46554062	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164804, intron 2 of 11)	intron (NM_001164804, intron 2 of 11)	12478.0	NM_178893	107684.0	Mm.416311	NM_178893	ENSMUSG00000028337	Coro2a	9030208C03Rik|AI563590|IR10	coronin, actin binding protein 2A	protein-coding	1.82097820807101	0.796366028481621	1.56106982971236	0.999045052475595	1.29165706237192	0.801135997826592	0.779559247283799	2.55755326466714	0.7075900133523	0.608561284559783	0.974576632476413
Merged-chr8-71747309-3	chr8	71747210	71747410	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21629.0	NM_028715	74015.0	Mm.22025	NM_028715	ENSMUSG00000070000	Fcho1	3322402E17Rik|N28152	FCH domain only 1	protein-coding	4.60412062965943	4.44787319674094	3.8929013656668	4.96203094491221	3.5472895471599	3.0239972197769	3.51161840020063	2.6487870428648	-1.7997429690671	0.000297244730880068	0.00729810835149875
Merged-chr2-26253891-2	chr2	26253791	26253991	+	608.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16492.0	NM_001302956	227638.0	Mm.116769	NM_153559	ENSMUSG00000036327	Qsox2	BC030934|Qscn6l1|Soxn	quiescin Q6 sulfhydryl oxidase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-64615088-4	chr1	64615023	64615223	+	919.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_025964, exon 2 of 3)	exon (NM_025964, exon 2 of 3)	2045.0	NM_025964	67099.0	Mm.46394	NM_025964	ENSMUSG00000025956	Mettl21a	2310038H17Rik|AI464204|Fam119a	methyltransferase like 21A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-11707047-3	chr11	11706947	11707147	+	832.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025597, intron 2 of 7)	intron (NM_001025597, intron 2 of 7)	16870.0	NM_001301863	22778.0	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-83231410-2	chr12	83231310	83231510	+	614.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001267625, intron 8 of 10)	intron (NM_001267625, intron 8 of 10)	256326.0	NM_001267626	70127.0	Mm.151308	NM_058212	ENSMUSG00000021221	Dpf3	2810403B03Rik|6530402L11Rik|BAF45C|C78788|CERD4|cer-d4	D4, zinc and double PHD fingers, family 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100123699-4	chr7	100123611	100123811	+	943.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2211.0	NM_133692	67967.0	Mm.37562	NM_133692	ENSMUSG00000030726	Pold3	2410142G14Rik|C85233|P66|P68	polymerase (DNA-directed), delta 3, accessory subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-44873904-2	chr2	44873804	44874004	+	883.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	-12282.0	NM_172662	227835.0	Mm.314312	NM_172662	ENSMUSG00000036890	Gtdc1	E330008O22Rik	glycosyltransferase-like domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88148509-4	chr3	88148373	88148573	+	814.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310593, intron 1 of 10)	intron (NM_001310593, intron 1 of 10)	6101.0	NM_133665	17261.0	Mm.28184	NM_133665	ENSMUSG00000001419	Mef2d	C80750	myocyte enhancer factor 2D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-54002391-2	chr17	54002291	54002491	+	677.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11760.0	NM_018751	20888.0	Mm.10108	NM_018751	ENSMUSG00000023943	Sult1c1	(PST)G|P-SULT|ST1C1|Stp2|Sult1a2|mOLFST	sulfotransferase family, cytosolic, 1C, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-21048884-4	chr11	21048774	21048974	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42450.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-59892215-2	chr19	59892115	59892315	+	563.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51149.0	NM_001033172	74998.0	Mm.24167	NM_001033172	ENSMUSG00000040022	Rab11fip2	4930470G04Rik|A830046J09Rik|AW558126|Nrip11	RAB11 family interacting protein 2 (class I)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-73609966-3	chr15	73609825	73610025	+	753.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033219, intron 1 of 7)	intron (NM_001033219, intron 1 of 7)	7399.0	NM_001357747	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-103426252-1	chr10	103426152	103426352	+	708.0	f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	58444.0	NM_175328	103098.0	Mm.458408	NM_175328	ENSMUSG00000019894	Slc6a15	AA536730|AI326450|AI326451|v7-3	solute carrier family 6 (neurotransmitter transporter), member 15	protein-coding	-1.18832717429738	-1.16380929885254	-0.856565824811958	-1.18328408639367	-1.18787580914644	-1.16149229066421	-0.849604865165746	-1.18171197755832	0.0406512889656815	0.990321405100139	1
Merged-chr14-121895379-1	chr14	121895279	121895479	+	571.0	f1_c57bl6.idr	intron (NM_026861, intron 1 of 8)	intron (NM_026861, intron 1 of 8)	-15971.0	NR_130999	78312.0	Mm.188743	NR_130999	ENSMUSG00000102112	1810041H14Rik	-	RIKEN cDNA 1810041H14 gene	ncRNA	1.46689901372645	0.947386776753845	1.81669324177213	1.93304358645231	1.23213651482594	0.950866509101483	1.32753241059256	1.66992499227909	-0.972170910538627	0.441294032947693	0.910462995639072
Merged-chr18-60794604-2	chr18	60794500	60794700	+	595.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-9249.0	NM_001042605	16149.0	Mm.439737	NM_010545	ENSMUSG00000024610	Cd74	CLIP|DHLAG|HLADG|Ia-GAMMA|Ii	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	protein-coding	1.17579392048072	1.34257320186763	0.822441451402045	2.16968093957172	1.00162367666139	0.850644050726879	1.30207076276478	2.57012538284337	0.459154614764767	0.724173941947036	0.998431161219273
Merged-chr14-103715694-2	chr14	103715594	103715794	+	915.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16262.0	NR_045148	70898.0	Mm.27548	NR_045148	ENSMUSG00000089707	Slain1os	4921525B02Rik	SLAIN motif family, member 1, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-77522603-3	chr10	77522536	77522736	+	893.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6823.0	NM_133998	108707.0	Mm.259547	NM_133998	ENSMUSG00000032977	Fam207a	1810008A18Rik|AI303072	family with sequence similarity 207, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80665368-5	chr10	80665351	80665551	+	944.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_021462, exon 14 of 14)	3' UTR (NM_021462, exon 14 of 14)	-8380.0	NM_145361	208198.0	Mm.60720	NM_145361	ENSMUSG00000003344	Btbd2	2610037C03Rik|4930512K17Rik	BTB (POZ) domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123900054-1	chr5	123899954	123900154	+	765.0	f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-7221.0	NM_026603	68184.0	Mm.28549	NM_026603	ENSMUSG00000023106	Denr	1500003K04Rik	density-regulated protein	protein-coding	0.485034361280113	0.346614360223686	0.337229661300562	1.13760283175201	1.354232055345	0.756714179280001	0.339309678396861	0.331191293869612	0.706923919303047	0.700125341126173	1
Merged-chr8-26694571-2	chr8	26694471	26694671	+	718.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	129852.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-101906040-4	chr12	101905931	101906131	+	978.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028446, intron 1 of 20)	intron (NM_028446, intron 1 of 20)	-6636.0	NR_152255	100504056.0	Mm.416837	NR_152255		Gm20036	-	predicted gene, 20036	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-50689242-2	chr16	50689142	50689342	+	721.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37890.0	NR_105782	102466634.0		NR_105782	ENSMUSG00000098482	Mir6363	Gm28026|mmu-mir-6363	microRNA 6363	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-63923669-4	chr11	63923570	63923770	+	966.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1386.0	NM_018805	54710.0	Mm.274426	NM_018805	ENSMUSG00000070407	Hs3st3b1	3-OST-3B|3OST3B1|3Ost3b|AU041882|AW536289|Hs3st3b|m3-OST-3B	heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-6709837-2	chr15	6709737	6709937	+	957.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030168, intron 2 of 37)	intron (NM_030168, intron 2 of 37)	1456.0	NM_030168	78757.0	Mm.275811	NM_030168	ENSMUSG00000050310	Rictor	4921505C17Rik|6030405M08Rik|AVO3|AW492497|D530039E11Rik	RPTOR independent companion of MTOR, complex 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-11604475-2	chr2	11604375	11604575	+	724.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1276.0	NM_152824	76938.0	Mm.182769	NM_152824	ENSMUSG00000037197	Rbm17	2700027J02Rik	RNA binding motif protein 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-66180040-4	chr2	66179935	66180135	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55242.0	NM_015736	14425.0	Mm.439760	NM_015736	ENSMUSG00000026994	Galnt3	-	polypeptide N-acetylgalactosaminyltransferase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-58362768-4	chr3	58362685	58362885	+	957.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-51935.0	NM_001081229	72033.0	Mm.218409	NM_001081229	ENSMUSG00000027806	Tsc22d2	1810043J12Rik|5530402M19Rik	TSC22 domain family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44548896-4	chr7	44548798	44548998	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011131)	promoter-TSS (NM_011131)	-83.0	NM_011131	18971.0	Mm.16549	NM_011131	ENSMUSG00000038644	Pold1	125kDa	polymerase (DNA directed), delta 1, catalytic subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-45974002-4	chr13	45973926	45974126	+	988.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9035.0	NM_009124	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44818269-2	chr7	44818169	44818369	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001171024, intron 1 of 8)	B2_Mm2|SINE|B2	-1611.0	NR_033136	107503.0	Mm.389890	NM_030693	ENSMUSG00000038539	Atf5	AFTA|Atf7|Atfx|ODA-10	activating transcription factor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5511657-4	chr17	5511555	5511755	+	967.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	19055.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-122152287-2	chr2	122152187	122152387	+	906.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009735, intron 3 of 3)	intron (NM_009735, intron 3 of 3)	4600.0	NM_009735	12010.0	Mm.163	NM_009735	ENSMUSG00000060802	B2m	Ly-m11|beta2-m|beta2m	beta-2 microglobulin	protein-coding	1.10536888956952	0.400243232728869	0.390243490505863	1.28632206138267	1.27884116806191	0.402478538081434	0.392460959050296	0.383802327776174	-0.777334263107472	0.683675463117296	1
Merged-chr1-152688192-3	chr1	152688100	152688300	+	779.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346117, intron 1 of 18)	intron (NM_001346117, intron 1 of 18)	-62351.0	NM_001081197	71281.0	Mm.158650	NM_001081197	ENSMUSG00000055547	Apobec4	4933431M11Rik	apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 4 (putative)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-151584873-7	chr1	151584768	151584968	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022018, intron 1 of 13)	MTD|LTR|ERVL-MaLR	13495.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-112897076-3	chr12	112896967	112897167	+	919.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC1|LINE|L1	23474.0	NR_105906	102465567.0		NR_105906	ENSMUSG00000098338	Mir6941	Gm27923|mmu-mir-6941	microRNA 6941	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-117884319-1	chr4	117884219	117884419	+	701.0	f1_balb.idr	promoter-TSS (NM_001253381)	promoter-TSS (NM_001253381)	-843.0	NM_001253381	53418.0	Mm.123843	NM_017377	ENSMUSG00000028541	B4galt2	Ggtb2	UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-48740320-2	chr9	48740220	48740420	+	640.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033324, intron 3 of 6)	intron (NM_001033324, intron 3 of 6)	95625.0	NM_001033324	235320.0	Mm.457803	NM_001033324	ENSMUSG00000066687	Zbtb16	AI467657|PLZF|Zfp145|lu	zinc finger and BTB domain containing 16	protein-coding	-1.00919648871429	-0.358857994279776	-0.815938827036925	-1.0053256497997	-1.00862036031031	-0.98731868398489	-0.999590604604814	-1.00491860388599	-2.95196804306169	0.334505839027851	1
Merged-chr10-68378346-4	chr10	68378250	68378450	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB8|LINE|L1	-57208.0	NR_045357	75148.0	Mm.23505	NR_045357	ENSMUSG00000112157	4930545H06Rik	-	RIKEN cDNA 4930545H06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118211228-3	chr11	118211136	118211336	+	964.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	1506.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56884982-4	chr17	56884864	56885064	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_030141, exon 11 of 14)	exon (NM_030141, exon 11 of 14)	9331.0	NM_030141	78625.0	Mm.160106	NM_030141	ENSMUSG00000024209	1700061G19Rik	1700026H02|AI507598	RIKEN cDNA 1700061G19 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-54557688-4	chr1	54557591	54557791	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163314)	promoter-TSS (NM_001163314)	-7.0	NM_001163314	241062.0	Mm.103539	NM_175508	ENSMUSG00000073678	Pgap1	5033403E17Rik|9030223K07Rik|A530084K22|D230012E17Rik|oto	post-GPI attachment to proteins 1	protein-coding	6.40378867113775	4.50337093417718	5.92911043070453	6.58353947503296	6.22093908473022	5.89689492646557	4.78549581407158	6.23793306461002	-0.174445747791229	0.75976123230559	0.998431161219273
Merged-chr6-117877940-2	chr6	117877840	117878040	+	735.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	15059.0	NM_001001792	22685.0	Mm.249661	NM_008616	ENSMUSG00000042097	Zfp239	Mok-2|Mok2|Znf239	zinc finger protein 239	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-62441463-4	chr2	62441362	62441562	+	895.6749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29231.0	NM_001159543	13482.0	Mm.1151	NM_010074	ENSMUSG00000035000	Dpp4	Cd26|Dpp-4|THAM	dipeptidylpeptidase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-31602984-2	chr15	31602884	31603084	+	612.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026546, intron 1 of 4)	intron (NM_026546, intron 1 of 4)	868.0	NM_001356313	68073.0	Mm.119185	NM_026546	ENSMUSG00000039065	Fam173b	A930016P21Rik|AA987072	family with sequence similarity 173, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-144263531-3	chr1	144263432	144263632	+	835.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14428.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128764248-3	chr2	128764147	128764347	+	625.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 8 of 18)	intron (NM_008587, intron 8 of 18)	-54056.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	-0.954405996294011	-0.939128586936942	-0.628263158555397	-0.950988910944965	-0.482468089803291	-0.936567086410499	-0.948273002289547	-0.950628393041393	0.642294036855339	0.839637034350725	1
Merged-chr8-83972818-4	chr8	83972718	83972918	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008854)	promoter-TSS (NM_008854)	-160.0	NM_008854	18747.0	Mm.19111	NM_008854	ENSMUSG00000005469	Prkaca	PKCD|Pkaca	protein kinase, cAMP dependent, catalytic, alpha	protein-coding	6.25122091029101	6.92119463049597	6.79894746515277	6.37860353829139	6.26381796398113	6.86766564124764	6.51258491619563	6.3123040610945	-0.112465519563912	0.61422651938558	0.977250439470701
Merged-chr9-80002995-2	chr9	80002893	80003093	+	891.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357352, intron 1 of 5)	intron (NM_001357352, intron 1 of 5)	9858.0	NM_001357352	70598.0	Mm.23049	NM_001081243	ENSMUSG00000034898	Filip1	5730485H21Rik|AI843021	filamin A interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-66986953-2	chr3	66986853	66987053	+	814.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356273, intron 1 of 9)	intron (NM_001356273, intron 1 of 9)	986.0	NM_001356273	66880.0	Mm.316418	NM_025822	ENSMUSG00000034544	Rsrc1	1200013F24Rik|SRrp53	arginine/serine-rich coiled-coil 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-68474701-4	chr11	68474597	68474797	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177320, intron 2 of 18)	intron (NM_177320, intron 2 of 18)	-28322.0	NM_001004435	104709.0	Mm.234573	NM_001004435	ENSMUSG00000046207	Pik3r6	BB220380|p84|p84 PIKAP|p87(PIKAP)|p87PIKAP	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129607101-4	chr2	129606952	129607152	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355160, intron 1 of 7)	intron (NM_001355160, intron 1 of 7)	11590.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	1.73590524331876	1.12007949732341	2.08323146737089	1.52532647225296	0.816552531872003	0.875036280575449	0.856586578070784	1.94570933156569	-1.35468583405294	0.324099184322274	0.826645836202943
Merged-chr11-98217626-3	chr11	98217531	98217731	+	771.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026952, intron 2 of 12)	intron (NM_026952, intron 2 of 12)	14326.0	NM_001109626	69131.0	Mm.260516	NM_026952	ENSMUSG00000003119	Cdk12	1810022J16Rik|AI646528|Crk7|Crkrs|D11Ertd752e|Pksc	cyclin-dependent kinase 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-29474258-3	chr17	29474163	29474363	+	705.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MamTip2|DNA|hAT-Tip100	-16782.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69323901-4	chr11	69323809	69324009	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172560)	promoter-TSS (NM_172560)	-36.0	NM_172560	216846.0	Mm.28774	NM_172560	ENSMUSG00000032782	Cntrob	9830165K03Rik|Lip8|Nip2	centrobin, centrosomal BRCA2 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84104973-4	chr8	84104879	84105079	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357322)	promoter-TSS (NM_001357322)	-182.0	NM_172502	212123.0	Mm.260557	NM_172502	ENSMUSG00000037103	Dcaf15	6720484B16	DDB1 and CUL4 associated factor 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132823672-2	chr4	132823572	132823772	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19462.0	NM_001355198	100336.0	Mm.105230	NM_146154	ENSMUSG00000028882	Ppp1r8	6330548N22Rik|AU044684|NIPP1	protein phosphatase 1, regulatory (inhibitor) subunit 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-71990494-2	chr9	71990394	71990594	+	627.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011544, intron 5 of 20)	intron (NM_011544, intron 5 of 20)	-94398.0	NM_001253863	21406.0	Mm.171615	NM_011544	ENSMUSG00000032228	Tcf12	A130037E08Rik|ALF1|HEB|HEBAlt|HTF-4|HTF4|ME1|REB|bHLHb20	transcription factor 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-12877415-2	chr8	12877315	12877515	+	580.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38478.0	NM_178076	17207.0	Mm.334413	NM_178076	ENSMUSG00000031442	Mcf2l	C130040G20Rik|Dbs|Ost|mKIAA0362	mcf.2 transforming sequence-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-83360141-4	chr10	83360023	83360223	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026579)	promoter-TSS (NM_026579)	-98.0	NM_026579	28109.0	Mm.196210	NM_026579	ENSMUSG00000020255	D10Wsu102e	AI747614|C430041I18Rik	DNA segment, Chr 10, Wayne State University 102, expressed	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124280180-1	chr6	124280080	124280280	+	581.0	f0_balb.idr	Intergenic	Intergenic	-24471.0	NM_001170395	93671.0	Mm.37426	NM_053094	ENSMUSG00000008845	Cd163	CD163v2|CD163v3	CD163 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-11333460-4	chr2	11333352	11333552	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6037.0	NR_040369	100503147.0	Mm.91961	NR_040369	ENSMUSG00000086006	Gm13293	-	predicted gene 13293	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-57224526-2	chr2	57224426	57224626	+	828.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT2B3|LTR|ERVL	-13152.0	NM_001145820	14571.0	Mm.3711	NM_010274	ENSMUSG00000026827	Gpd2	AA408484|AI448216|AU021455|AW494132|GPDH|Gdm1|Gpd-m|Gpdh-m|TISP38	glycerol phosphate dehydrogenase 2, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-99181370-2	chr11	99181270	99181470	+	552.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26293.0	NM_007719	12775.0	Mm.2932	NM_007719	ENSMUSG00000037944	Ccr7	CC-CKR-7|CCR-7|CD197|Cdw197|Cmkbr7|EBI1|Ebi1h	chemokine (C-C motif) receptor 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-88708211-2	chr4	88708111	88708311	+	985.3333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14297.0	NM_172871	242521.0	Mm.260601	NM_172871	ENSMUSG00000070923	Klhl9	8030469P05|C530050O22Rik|mKIAA1354	kelch-like 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118239040-2	chr11	118238940	118239140	+	540.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	IMPB_01|Satellite|Satellite	9552.0	NM_001112699	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0.223876111734655	0.0822230794256515	-0.0846542510721199	0.0499211727529476	0.23118156094656	0.0863393676462787	-0.0838945977859034	0.0523764062918734	0.0384501682475386	0.984536389538016	1
Merged-chr4-3626847-4	chr4	3626749	3626949	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR30D2_MM|LTR|ERV1	-29657.0	NR_040643	70143.0	Mm.417835	NR_040643	ENSMUSG00000085394	2210414B05Rik	-	RIKEN cDNA 2210414B05 gene	ncRNA	4.30472198313839	4.79012953709353	4.27031419158529	5.01471513888323	4.38339896753716	5.22270742170627	4.76595995646648	4.04562487304866	0.044879975850797	0.910905049389927	0.998431161219273
Merged-chr6-97418995-2	chr6	97418895	97419095	+	677.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 4 of 23)	RLTR11A2|LTR|ERVK	40291.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-143501919-2	chr7	143501819	143502019	+	808.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_009434, intron 1 of 1)	CpG	605.0	NM_009434	22113.0	Mm.334344	NM_009434	ENSMUSG00000010760	Phlda2	Ipl|Tssc3	pleckstrin homology like domain, family A, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-39911669-3	chr1	39911597	39911797	+	867.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252202, intron 2 of 29)	intron (NM_001252202, intron 2 of 29)	10784.0	NM_008696	26921.0	Mm.491139	NM_008696	ENSMUSG00000026074	Map4k4	9430080K19Rik|AU043147|AU045934|AW046177|HGK|Nik	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-130255544-4	chr5	130255440	130255640	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023248)	promoter-TSS (NM_023248)	-10.0	NM_023248	66711.0	Mm.280484	NM_023248	ENSMUSG00000025337	Sbds	4733401P19Rik|AI836084|CGI-97|SDS	SBDS ribosome maturation factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-88300637-2	chr1	88300537	88300737	+	632.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-6075.0	NM_134252	171382.0	Mm.218753	NM_134252	ENSMUSG00000036251	Trpm8	CMR1|LTRPC6|LTrpC-6|TRPP8|Trp-p8	transient receptor potential cation channel, subfamily M, member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78865097-2	chr15	78864997	78865197	+	639.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9568.0	NM_025622	107753.0	Mm.390793	NM_025622	ENSMUSG00000043501	Lgals2	2200008F12Rik|AI324147	lectin, galactose-binding, soluble 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-45067142-4	chr10	45067042	45067242	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011156)	promoter-TSS (NM_011156)	-72.0	NM_011156	19072.0	Mm.10281	NM_011156	ENSMUSG00000019849	Prep	AI047692|AI450383|D10Wsu136e|PEP|Pop	prolyl endopeptidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-162998720-4	chr2	162998625	162998825	+	915.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291154, intron 9 of 12)	intron (NM_001291154, intron 9 of 12)	7310.0	NM_001291152	27219.0	Mm.26462	NM_013731	ENSMUSG00000017868	Sgk2	AI098171|AW146006|Sgkl	serum/glucocorticoid regulated kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-177442682-2	chr1	177442582	177442782	+	805.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355099, intron 1 of 1)	CpG	331.0	NM_001355100	30928.0	Mm.330700	NM_013915	ENSMUSG00000063659	Zbtb18	RP58|Zfp238|Znf238.|zfp-238	zinc finger and BTB domain containing 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120724222-2	chr8	120724122	120724322	+	604.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-12136.0	NM_008320	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-43665694-2	chr19	43665626	43665826	+	548.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356944, intron 2 of 2)	intron (NM_001356944, intron 2 of 2)	9155.0	NM_145156	246696.0	Mm.23827	NM_145156	ENSMUSG00000040414	Slc25a28	Mfrn2|Mrs3/4	solute carrier family 25, member 28	protein-coding	-1.13799161856527	-1.11509962161431	-1.12611682695956	-0.600839935108385	-0.990754861597232	-1.11271214725662	-1.12362277315966	-1.13354676675577	-1.63747442377455	0.616904426498488	1
Merged-chr7-19263661-2	chr7	19263561	19263761	+	772.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001282022, intron 3 of 12)	B1_Mus2|SINE|Alu	8193.0	NM_001282021	22323.0	Mm.9684	NM_009499	ENSMUSG00000030403	Vasp	-	vasodilator-stimulated phosphoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132760491-4	chr4	132760397	132760597	+	995.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3326.0	NM_133888	100340.0	Mm.287187	NM_133888	ENSMUSG00000028885	Smpdl3b	1110054A24Rik|AU045240|Asml3b	sphingomyelin phosphodiesterase, acid-like 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-34673718-3	chr19	34673630	34673830	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172838, intron 5 of 6)	intron (NM_172838, intron 5 of 6)	32841.0	NM_008331	15957.0	Mm.439751	NM_008331	ENSMUSG00000034459	Ifit1	ISG56|Ifi56|P56	interferon-induced protein with tetratricopeptide repeats 1	protein-coding	3.57234640151379	4.17894415564645	2.13146560921075	4.17020857761158	4.88331768825688	5.16259656725087	3.47052654821372	5.48201866282653	1.54525467667264	0.00482793494077808	0.0650849027184892
Merged-chr2-45060963-2	chr2	45060863	45061063	+	730.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355291, intron 2 of 9)	intron (NM_001355291, intron 2 of 9)	-37786.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-96151493-2	chr7	96151395	96151595	+	581.0	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-19749.0	NM_001310762	23966.0	Mm.254610	NM_011858	ENSMUSG00000048078	Tenm4	Doc4|ELM2|Odz4|R75022|Ten-m4|l(7)-3Rn|l7Rn3|mKIAA1302	teneurin transmembrane protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-146231080-4	chr5	146230953	146231153	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359990)	promoter-TSS (NM_001359990)	-197.0	NM_001359990	264064.0	Mm.260576	NM_153599	ENSMUSG00000029635	Cdk8	-	cyclin-dependent kinase 8	protein-coding	5.2331039404575	5.68862350994303	6.17586650390618	4.48692042444496	5.99572906155987	6.08873114875802	5.79271063367111	4.33965248522377	0.199171666177888	0.611944455176208	0.976008377912766
Merged-chr7-116307928-2	chr7	116307828	116308028	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001305185, exon 3 of 27)	exon (NM_001305185, exon 3 of 27)	448.0	NM_001305185	233765.0	Mm.3741	NM_172743	ENSMUSG00000045659	Plekha7	A430081P20Rik|AI414265	pleckstrin homology domain containing, family A member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-18677863-3	chr2	18677790	18677990	+	838.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007552, intron 1 of 9)	intron (NM_007552, intron 1 of 9)	872.0	NM_007552	12151.0	Mm.289584	NM_007552	ENSMUSG00000026739	Bmi1	AW546694|Bmi-1|Pcgf4	Bmi1 polycomb ring finger oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120434832-2	chr8	120434732	120434932	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54034.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-90185275-3	chr16	90185161	90185361	+	818.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35481.0	NM_011434	20655.0	Mm.276325	NM_011434	ENSMUSG00000022982	Sod1	B430204E11Rik|Cu/Zn-SOD|CuZnSOD|Ipo-1|Ipo1|SODC|Sod-1	superoxide dismutase 1, soluble	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-4228089-2	chr7	4227989	4228189	+	619.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9665.0	NM_001081239	232801.0	Mm.258061	NM_001081239	ENSMUSG00000070873	Lilra5	E030017K20|EG232801|Gm4878|Lilrc1	leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 5	protein-coding	0.857964369772268	0.759991260665509	0.400014218710842	0.926539467867827	0.532900960457068	0.408778753565671	0.401592499088666	1.03033466709914	-0.709700191606472	0.683207740391814	1
Merged-chr4-8854188-4	chr4	8854094	8854294	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001277149, exon 29 of 38)	exon (NM_001277149, exon 29 of 38)	102870.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	5.88869442009327	5.56878828615141	5.13466955914879	5.69373960710411	5.61720505052539	5.7228833766285	5.6706234493612	6.37007388892972	0.312154637097728	0.266899516586203	0.769897515627807
Merged-chr19-47357249-1	chr19	47357149	47357349	+	990.0	f1_c57bl6.idr	intron (NM_008018, intron 5 of 14)	intron (NM_008018, intron 5 of 14)	-83660.0	NR_105961	102466782.0		NR_105961	ENSMUSG00000098786	Mir6995	Gm27576|mmu-mir-6995	microRNA 6995	ncRNA	-1.56355737717652	-1.81244775989375	-1.82128546162293	-1.82854501295842	-1.83962066705452	-1.81053259306168	-1.81928479966835	-1.82724555674025	-1.28500227969968	0.715751224811686	1
Merged-chr10-63025186-2	chr10	63025086	63025286	+	833.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026085, intron 1 of 9)	intron (NM_026085, intron 1 of 9)	674.0	NM_026085	67307.0	Mm.368563	NM_026085	ENSMUSG00000020072	Pbld2	3110049J23Rik|Mawbp	phenazine biosynthesis-like protein domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-65496693-3	chr4	65496597	65496797	+	939.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207109, intron 19 of 22)	intron (NM_207109, intron 19 of 22)	-108289.0	NM_053084	69807.0	Mm.22786	NM_053084	ENSMUSG00000051675	Trim32	1810045E12Rik|3f3|BBS11|Zfp117	tripartite motif-containing 32	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-80047633-2	chr18	80047493	80047693	+	779.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_053117, intron 1 of 2)	CpG	698.0	NM_053117	93737.0	Mm.24678	NM_053117	ENSMUSG00000056214	Pard6g	2410049N21Rik|Par6a	par-6 family cell polarity regulator gamma	protein-coding	0.212380990211348	-0.25509047058336	-0.259858812270985	-0.263541374283945	-0.118679450180548	0.491091814991362	-0.258806671103046	-0.262897801310032	1.0587197897877	0.660891120011074	1
Merged-chr11-70500990-2	chr11	70500890	70501090	+	634.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-4284.0	NM_029360	75604.0	Mm.24400	NM_029360	ENSMUSG00000018919	Tm4sf5	2010003F10Rik|AI323987	transmembrane 4 superfamily member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-33138685-4	chr2	33138563	33138763	+	966.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290570, intron 16 of 16)	intron (NM_001290570, intron 16 of 16)	-7227.0	NM_001355201	99326.0	Mm.41290	NM_178888	ENSMUSG00000038860	Garnl3	AW120551	GTPase activating RANGAP domain-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33248403-2	chr16	33248303	33248503	+	897.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-3053.0	NM_080557	69150.0	Mm.28196	NM_080557	ENSMUSG00000022808	Snx4	1810036H14Rik|AI037066	sorting nexin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105614740-2	chr8	105614640	105614840	+	635.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_035492)	promoter-TSS (NR_035492)	-726.0	NR_035492	100316712.0		NR_035492	ENSMUSG00000089432	Mir1966	mir-1966|mmu-mir-1966	microRNA 1966	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-36230497-4	chr2	36230403	36230603	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008969)	promoter-TSS (NM_008969)	77.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-66082760-2	chr5	66082660	66082860	+	557.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_139065, intron 2 of 6)	intron (NM_139065, intron 2 of 6)	15419.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-150788903-3	chr2	150788801	150789001	+	897.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153781, intron 1 of 19)	intron (NM_153781, intron 1 of 19)	2105.0	NM_153781	110078.0	Mm.222584	NM_153781	ENSMUSG00000033059	Pygb	-	brain glycogen phosphorylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-81163363-3	chr13	81163282	81163482	+	892.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 86 of 89)	intron (NM_054053, intron 86 of 89)	199308.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-79225783-4	chr8	79225687	79225887	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026315, intron 2 of 5)	MTEa|LTR|ERVL-MaLR	22796.0	NM_026315	67687.0	Mm.178707	NM_026315	ENSMUSG00000031682	1700011L22Rik	-	RIKEN cDNA 1700011L22 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-72526250-4	chr9	72526151	72526351	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045735, intron 1 of 2)	MTC|LTR|ERVL-MaLR	5607.0	NR_045735	75115.0	Mm.280755	NR_045735	ENSMUSG00000096986	4930509E16Rik	-	RIKEN cDNA 4930509E16 gene	ncRNA	3.33238639959136	3.0617029970094	4.00598869460036	4.37742236508605	4.28860869432723	4.10038769615026	4.27600308382893	4.52471424536438	0.688300007068854	0.146996012272334	0.597139402897766
Merged-chr5-102072239-4	chr5	102072136	102072336	+	948.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2315.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-11203552-4	chr2	11203505	11203705	+	916.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008859, intron 1 of 17)	intron (NM_008859, intron 1 of 17)	31223.0	NM_008859	18761.0	Mm.329993	NM_008859	ENSMUSG00000026778	Prkcq	A130035A12Rik|AW494342|PKC-0|PKC-theta|PKCtheta|Pkcq	protein kinase C, theta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-9131803-4	chr4	9131714	9131914	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER5A|DNA|hAT-Charlie	-137479.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-113627304-4	chr13	113627218	113627418	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8754.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-124775875-2	chr8	124775776	124775976	+	631.5	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-17143.0	NM_198632	330863.0	Mm.422769	NM_198632	ENSMUSG00000036913	Trim67	D130049O21Rik|TNL	tripartite motif-containing 67	protein-coding	2.38230648322336	2.23136867456955	1.95766043708754	1.40797556739011	3.08277029553928	3.45140798929625	3.03310085736546	3.23776578960348	2.32476137921264	0.00256122687079837	0.0402219895233493
Merged-chr17-92173733-1	chr17	92173633	92173833	+	559.0	f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	-1025284.0	NM_001315503	11516.0	Mm.3407	NM_009625	ENSMUSG00000024256	Adcyap1	PACAP	adenylate cyclase activating polypeptide 1	protein-coding	-2.18308165884198	-2.15547475440471	-2.16382331017202	-2.1706810624505	-2.18114370519566	-2.15366558754311	-2.03057248461154	-2.16945352807143	0.759018020146679	0.829933115115583	1
Merged-chr5-33222166-2	chr5	33222066	33222266	+	864.1666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4|LINE|L1	-3928.0	NM_133903	100689.0	Mm.34694	NM_133903	ENSMUSG00000037379	Spon2	2310045I24Rik|AI504350|M-spondin|Mindin|Mspondin	spondin 2, extracellular matrix protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80697958-2	chr10	80697858	80698058	+	827.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_172457, intron 1 of 3)	intron (NM_172457, intron 1 of 3)	3862.0	NM_172457	208228.0	Mm.49309	NM_172457	ENSMUSG00000003348	Mob3a	5330417K06Rik|A630029F06|AV218468|Mobkl2a	MOB kinase activator 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-69633616-4	chr3	69633512	69633712	+	979.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34652.0	NM_020026	26879.0	Mm.153710	NM_020026	ENSMUSG00000043300	B3galnt1	B3galt3|b3GT3	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-55148334-2	chr18	55148234	55148434	+	878.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-155743.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44872082-2	chr7	44871982	44872182	+	842.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER4B|LTR|ERVK	-2294.0	NM_133949	84113.0	Mm.42855	NM_133949	ENSMUSG00000038502	Ptov1	1110030G05Rik|AU041779|Gcap3	prostate tumor over expressed gene 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-45598798-2	chr14	45598698	45598898	+	661.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039106, intron 11 of 11)	intron (NM_001039106, intron 11 of 11)	55088.0	NR_045809	67651.0	Mm.55930	NR_045809	ENSMUSG00000115324	4930527F14Rik	-	RIKEN cDNA 4930527F14 gene	ncRNA	-1.50811478453619	-0.99851579554048	-1.48484165847197	-1.49312904261012	-1.50577282675516	-1.47256636097272	-1.48255773576353	-1.49164560481169	-2.24133836997777	0.518237887813808	1
Merged-chr6-110040532-4	chr6	110040458	110040658	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-604954.0	NM_001346640	108073.0	Mm.240881	NM_177328	ENSMUSG00000056755	Grm7	6330570A01Rik|BB176677|C030018L03|E130018M02Rik|Gpr1g|Gprc1g|SMN2|Tg(SMN2)89Ahmb|mGluR7	glutamate receptor, metabotropic 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95142818-4	chr3	95142744	95142944	+	919.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027206)	promoter-TSS (NM_027206)	-484.0	NM_027206	69769.0	Mm.34368	NM_027206	ENSMUSG00000013707	Tnfaip8l2	1810019A08Rik|AW610835|TIPE2	tumor necrosis factor, alpha-induced protein 8-like 2	protein-coding	2.78556550778414	2.87667287865464	2.07139278158994	3.0001781651977	2.30690781326666	2.15727717536276	1.69492433008222	2.17411790087829	-1.38620186422923	0.0905287368430903	0.46483471525395
Merged-chr10-44270997-2	chr10	44270897	44271097	+	654.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358596, intron 1 of 6)	intron (NM_001358596, intron 1 of 6)	2658.0	NM_001358596	11793.0	Mm.22264	NM_053069	ENSMUSG00000038160	Atg5	2010107M05Rik|3110067M24Rik|AW319544|Apg5l|Atg5l|C88337|Paddy	autophagy related 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-52917035-1	chr4	52916935	52917135	+	825.0	f1_balb.idr	Intergenic	Intergenic	-5243.0	NM_146839	258836.0	Mm.331617	NM_146839	ENSMUSG00000051593	Olfr272	MOR262-7	olfactory receptor 272	protein-coding	1.06061627451721	0.567651340135654	1.47614643870834	0.549603311344348	0.964253161390429	0.786268399107609	1.19168040458911	0.550989163360237	-0.400796399575253	0.803231939839378	0.998431161219273
Merged-chr4-137951845-3	chr4	137951657	137951857	+	875.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199307, intron 15 of 19)	intron (NM_199307, intron 15 of 19)	-41699.0	NM_001256198	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	2.97362479117578	3.426883956313	2.35211421912638	3.44275327446629	2.81532239506485	2.6352559485936	2.82772780215319	4.07824768358532	0.213660258360906	0.755138044875649	0.998431161219273
Merged-chr5-124478389-4	chr5	124478242	124478442	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030259)	promoter-TSS (NM_030259)	-107.0	NM_030259	80291.0	Mm.425280	NM_030259	ENSMUSG00000029401	Rilpl2	-	Rab interacting lysosomal protein-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-85026824-4	chr8	85026705	85026905	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026760)	promoter-TSS (NM_026760)	-28.0	NM_026760	68544.0	Mm.196005	NM_026760	ENSMUSG00000041203	Trir	1110002H14Rik|2310036O22Rik|AI854688	telomerase RNA component interacting RNase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-148896190-4	chr6	148896074	148896274	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001301351)	promoter-TSS (NM_001301351)	63.0	NM_001301351	232560.0	Mm.150568	NM_181541	ENSMUSG00000030309	Caprin2	C1qdc1|Eeg1|rng140	caprin family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-104758650-4	chr3	104758557	104758757	+	665.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	18890.0	NM_183224	329731.0	Mm.389494	NM_183224	ENSMUSG00000055865	Fam19a3	7530404M11Rik|Sam3|TAFA3|Tafa-3	family with sequence similarity 19, member A3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-155144451-3	chr4	155144340	155144540	+	850.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081100, intron 13 of 13)	intron (NM_001081100, intron 13 of 13)	57836.0	NM_001356327	76866.0	Mm.200590	NM_001081100	ENSMUSG00000029049	Morn1	2900057D20Rik|4930417P05Rik|AU042805	MORN repeat containing 1	protein-coding	1.48217804594122	1.49635290109508	2.32669950743206	1.40938655545304	1.3528960824368	1.82444766728834	1.99402133877536	1.01789565260979	-0.418113955888693	0.714366065694909	0.998431161219273
Merged-chr5-117287659-4	chr5	117287596	117287796	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018858)	promoter-TSS (NM_018858)	-132.0	NM_018858	23980.0	Mm.195898	NM_018858	ENSMUSG00000032959	Pebp1	HCNP|Pbp|Pbp1|Pbpr|Rkip	phosphatidylethanolamine binding protein 1	protein-coding	7.0738777414055	6.15044488118223	7.1614719258156	6.98049627535227	6.78255928256018	6.79078396923732	6.56119296534485	7.24728784316441	-0.030714862170032	0.891671084689452	0.998431161219273
Merged-chr8-125533935-2	chr8	125533835	125534035	+	707.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_001357372, intron 1 of 21)	intron (NM_001357372, intron 1 of 21)	35928.0	NM_001357372	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	2.46918308963817	1.15207073341427	2.43540047293206	2.3602561395184	1.65932483457658	1.15935720439585	1.12624394246274	3.00823149044614	-0.382319575898192	0.743227975563252	0.998431161219273
Merged-chr5-139470612-4	chr5	139470517	139470717	+	934.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001159908)	TTS (NM_001159908)	-10083.0	NM_028469	73212.0	Mm.84294	NM_028469	ENSMUSG00000053553	3110082I17Rik	AW411904	RIKEN cDNA 3110082I17 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-105691061-4	chr7	105690955	105691155	+	977.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	45529.0	NM_025897	101867.0	Mm.231400	NM_025897	ENSMUSG00000030888	Rrp8	1500003O22Rik|2900001K19Rik|AW538116	ribosomal RNA processing 8, methyltransferase, homolog (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-118171225-2	chr7	118171125	118171325	+	596.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001031814, intron 31 of 62)	intron (NM_001031814, intron 31 of 62)	-41600.0	NM_019419	54208.0	Mm.29924	NM_019419	ENSMUSG00000030654	Arl6ip1	AIP-6|AL022945|ARMER|AU042858|Aip-1|Arl6ip|C85138|mKIAA0069	ADP-ribosylation factor-like 6 interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-12932420-2	chr9	12932320	12932520	+	549.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	173435.0	NR_040755	78219.0	Mm.414868	NR_040755	ENSMUSG00000111830	4930568E12Rik	-	RIKEN cDNA 4930568E12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-53818008-4	chr5	53817888	53818088	+	923.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144517, intron 1 of 20)	intron (NM_144517, intron 1 of 20)	8361.0	NM_144517	67249.0	Mm.28823	NM_144517	ENSMUSG00000039178	Tbc1d19	2810453K03Rik	TBC1 domain family, member 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-57730514-4	chr14	57730414	57730614	+	872.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153382, intron 1 of 1)	intron (NM_153382, intron 1 of 1)	3904.0	NM_153382	50523.0	Mm.347899	NM_015771	ENSMUSG00000021959	Lats2	4932411G09Rik|AV277261|AW228608	large tumor suppressor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-67782151-4	chr15	67782156	67782356	+	934.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	476600.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-51457071-2	chr10	51456971	51457171	+	640.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23541.0	NM_008147	14727.0	Mm.439661	NM_008147	ENSMUSG00000112023	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-94266138-4	chr2	94265983	94266183	+	839.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4684.0	NR_030431	735259.0		NR_030431	ENSMUSG00000076335	Mir670	Mirn670|mir-670|mmu-mir-670	microRNA 670	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-92850475-1	chr8	92850375	92850575	+	554.0	f1_c57bl6.idr	intron (NM_008610, intron 12 of 12)	intron (NM_008610, intron 12 of 12)	-4858.0	NM_173014	270084.0	Mm.21463	NM_173014	ENSMUSG00000033192	Lpcat2	1-AGPAT 11|A330042H22|Aytl1|Aytl1a|lpafat1|lysoPAFAT|lysoPAFAT/LPCAT2	lysophosphatidylcholine acyltransferase 2	protein-coding	1.64187412281445	0.800627460509068	0.564885020870273	1.37826832177219	0.542891797796968	0.993383884335995	0.567445569403304	0.917469260808184	-1.88748903422671	0.237217396973637	0.733808141787246
Merged-chr16-44757361-3	chr16	44757264	44757464	+	722.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-8372.0	NM_021325	57781.0	Mm.416152	NM_021325	ENSMUSG00000022667	Cd200r1	CD200R|Mox2r|OX2R	CD200 receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100276647-2	chr7	100276548	100276748	+	607.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_027629, exon 14 of 14)	3' UTR (NM_027629, exon 14 of 14)	-8872.0	NM_177161	320452.0	Mm.150294	NM_177161	ENSMUSG00000051048	P4ha3	D930031A02Rik	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha polypeptide III	protein-coding	0.805894043896294	0.917181011159969	1.12588225556818	0.545459005335122	0.813037106968367	0.925176516630762	1.13743840054382	0.546570661783433	0.0404908495371023	0.979058174419707	1
Merged-chr6-38826058-1	chr6	38825958	38826158	+	545.0	f0_balb.idr	intron (NM_010433, intron 1 of 14)	intron (NM_010433, intron 1 of 14)	11253.0	NM_001136065	15258.0	Mm.23790	NM_010433	ENSMUSG00000061436	Hipk2	1110014O20Rik|B230339E18Rik|Stank	homeodomain interacting protein kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-25197274-2	chr2	25197174	25197374	+	935.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146115)	promoter-TSS (NM_146115)	-461.0	NM_146115	227612.0	Mm.119747	NM_146115	ENSMUSG00000059555	Tor4a	A830007P12Rik	torsin family 4, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-42592511-2	chr10	42592411	42592611	+	940.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8923.0	NM_152229	21907.0	Mm.287100	NM_152229	ENSMUSG00000019803	Nr2e1	Mtl1|Mtll|TLL|Tlx|XTLL|fierce|frc|tailless	nuclear receptor subfamily 2, group E, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3873719-6	chr12	3873601	3873801	+	900.7777710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007872, intron 6 of 22)	intron (NM_007872, intron 6 of 22)	-11457.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-35115576-2	chr9	35115494	35115694	+	733.75	f0_balb.idr|f0_c57.idr	intron (NM_009178, intron 1 of 10)	intron (NM_009178, intron 1 of 10)	-1134.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-12343563-1	chr14	12343463	12343663	+	631.0	f1_c57bl6.idr	intron (NM_080433, intron 4 of 4)	intron (NM_080433, intron 4 of 4)	2302.0	NM_080433	54713.0	Mm.34644	NM_080433	ENSMUSG00000021743	Fezf2	AI451466|AI852056|Fez|Fezl|Zfp312	Fez family zinc finger 2	protein-coding	-0.763259141758315	-1.10033796993195	-1.11088047887396	-0.961254762351736	-0.98163800128464	-1.09805336426509	-1.10849388593471	-1.11799028615135	-1.46376624633071	0.631847984820285	1
Merged-chr10-77900951-2	chr10	77900851	77901051	+	579.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_145152, exon 2 of 2)	exon (NM_145152, exon 2 of 2)	1585.0	NM_145152	237387.0	Mm.133301	NM_145152	ENSMUSG00000051652	Lrrc3	1300011L04Rik|C21orf102	leucine rich repeat containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-21907246-4	chr10	21907116	21907316	+	904.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161845, intron 1 of 13)	intron (NM_001161845, intron 1 of 13)	25032.0	NM_001161845	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-23092483-3	chr2	23092420	23092620	+	883.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149742, intron 8 of 12)	(CA)n|Simple_repeat|Simple_repeat	23448.0	NM_001355638	74159.0	Mm.181973	NM_028793	ENSMUSG00000026781	Acbd5	1300014E15Rik	acyl-Coenzyme A binding domain containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141958764-2	chr4	141958664	141958864	+	558.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177868, intron 9 of 31)	intron (NM_177868, intron 9 of 31)	-24228.0	NR_040672	545691.0	Mm.332015	NR_040672	ENSMUSG00000085424	Fhad1os1	Gm13037	forkhead-associated (FHA) phosphopeptide binding domain 1, opposite strand 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101981144-2	chr15	101981044	101981244	+	806.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23198.0	NM_031170	16691.0	Mm.358618	NM_031170	ENSMUSG00000049382	Krt8	AA960620|AL022697|AU019895|Card2|EndoA|K8|Krt-2.8|Krt2-8	keratin 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-128380724-2	chr7	128380624	128380824	+	568.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026418, intron 4 of 4)	intron (NM_026418, intron 4 of 4)	37448.0	NM_026418	67865.0	Mm.18635	NM_026418	ENSMUSG00000030844	Rgs10	2310010N19Rik	regulator of G-protein signalling 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75651329-7	chr11	75651239	75651439	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008659)	promoter-TSS (NM_008659)	-170.0	NM_008659	17913.0	Mm.234502	NM_008659	ENSMUSG00000017774	Myo1c	C80397|MMIb|MYO1E|NMI|mm1beta|myr2	myosin IC	protein-coding	3.26928782407528	3.49931982790991	4.59936320069311	2.8396940687194	2.93275223191471	3.06698678195658	4.55787458746957	2.98096577572436	-0.194971777294276	0.765001023204393	0.998431161219273
Merged-chr18-12648266-4	chr18	12648150	12648350	+	918.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028341, intron 1 of 13)	intron (NM_028341, intron 1 of 13)	4717.0	NM_028341	72747.0	Mm.52526	NM_028341	ENSMUSG00000024424	Ttc39c	1700008N02Rik|2810439F02Rik	tetratricopeptide repeat domain 39C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120686732-2	chr8	120686632	120686832	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18412.0	NM_001293559	12857.0	Mm.386758	NM_009941	ENSMUSG00000031818	Cox4i1	AL024441|COX|COX IV-1|COXIV|Cox4|Cox4a|IV-1	cytochrome c oxidase subunit 4I1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-138973235-1	chr4	138973135	138973335	+	1000.0	f0_balb.idr	5' UTR (NM_029857, exon 1 of 17)	5' UTR (NM_029857, exon 1 of 17)	330.0	NM_029857	77056.0	Mm.122336	NM_029857	ENSMUSG00000041143	Tmco4	4632413C14Rik|AI430825	transmembrane and coiled-coil domains 4	protein-coding	3.25091757681146	1.50967597889768	2.83695585457934	3.238539538073	3.52352217949402	1.81727179980161	2.75203982906064	2.11216042293675	-0.238708954256908	0.782500183021698	0.998431161219273
Merged-chr16-6644624-1	chr16	6644524	6644724	+	671.0	f1_c57bl6.idr	intron (NM_001359725, intron 4 of 16)	B4A|SINE|B4	-394746.0	NM_001359729	268859.0	Mm.370334	NM_021477	ENSMUSG00000008658	Rbfox1	A2bp|A2bp1|Hrnbp1|fox-1	RNA binding protein, fox-1 homolog (C. elegans) 1	protein-coding	-0.973420454409262	-1.32062347626183	-1.33050850609429	-1.33862836391711	-1.34999588871066	-1.31848134906075	-1.3282707520139	-1.18163826627392	-0.987604359287374	0.774485391035196	1
Merged-chr12-54405266-4	chr12	54405162	54405362	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13944.0	NR_033689	665239.0	Mm.26856	NR_033689		Gm7550	EG665239|Gm666	predicted gene 7550	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-59839199-1	chr13	59839099	59839299	+	604.666687	f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-16052.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	1.79673732084104	1.75043881748306	0.889924932286816	1.73160341922689	1.19720442728325	1.64117294490968	0.893485601080164	1.08445208596602	-1.29907701752944	0.317073120069088	0.820351486757242
Merged-chr16-91045738-2	chr16	91045638	91045838	+	984.083374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1359.0	NR_152264	67367.0	Mm.347	NM_026110	ENSMUSG00000022974	Paxbp1	1810007M14Rik|C21orf66|Gcfc|Gcfc1|Pax3/7bp	PAX3 and PAX7 binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-17481229-4	chr6	17481106	17481306	+	859.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008591, intron 1 of 21)	intron (NM_008591, intron 1 of 21)	17249.0	NM_008591	17295.0	Mm.86844	NM_008591	ENSMUSG00000009376	Met	AI838057|HGF|HGFR|Par4|c-Met	met proto-oncogene	protein-coding	1.74993895431483	1.74678604088572	0.972961580338891	2.03605419951499	1.66696455941941	0.996446072687009	0.977247272601722	2.04771600092624	-0.51094844690766	0.693845052280671	0.997555376536883
Merged-chr5-32738125-1	chr5	32738025	32738225	+	730.0	f1_balb.idr	exon (NM_177298, exon 7 of 8)	exon (NM_177298, exon 7 of 8)	8217.0	NM_001347332	320951.0	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69763681-1	chr11	69763581	69763781	+	790.0	f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	-1837.0	NM_019871	56293.0	Mm.6211	NM_019871	ENSMUSG00000018776	Slc35g3	Amac1	solute carrier family 35, member G3	protein-coding	0.679633901646877	0.729649820179769	0.713654189554568	1.86327194491831	1.18365417103534	1.63655195660735	1.8659963893992	0.703277083147835	0.99038872234763	0.520443162148913	0.947641799425091
Merged-chr3-135192083-4	chr3	135191975	135192175	+	976.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20488.0	NM_173762	229841.0	Mm.161470	NM_173762	ENSMUSG00000045328	Cenpe	312kDa|AU019344|BC049989|C530022J18|CENP-E|Kif10	centromere protein E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-49358328-2	chr2	49358228	49358428	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-93158.0	NM_172663	227867.0	Mm.29167	NM_172663	ENSMUSG00000069495	Epc2	5830499L14|D2Ertd694e	enhancer of polycomb homolog 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-104818596-4	chr3	104818495	104818695	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008619)	promoter-TSS (NM_008619)	-32.0	NM_001163440	17454.0	Mm.1597	NM_008619	ENSMUSG00000002227	Mov10	C77703|Mov-10	Moloney leukemia virus 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-91074757-1	chr5	91074657	91074857	+	577.0	f1_balb.idr	5' UTR (NM_007950, exon 1 of 5)	5' UTR (NM_007950, exon 1 of 5)	140.0	NM_007950	13874.0	Mm.4791	NM_007950	ENSMUSG00000029377	Ereg	EPR	epiregulin	protein-coding	0.526163100203341	-0.159160572301825	0.75442021479293	-0.170050730303792	-0.17682889951071	-0.157785350750971	-0.16393381048043	-0.169216897728455	-4.0278075454437	0.0907616493429026	1
Merged-chr1-141727-1	chr1	141627	141827	+	1000.0	f1_c57bl6.idr	Intergenic	Intergenic	3529771.0	NM_001011874	497097.0	Mm.454496	NM_001011874	ENSMUSG00000051951	Xkr4	AY534250|Gm210|XRG4|mKIAA1889	X-linked Kx blood group related 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-59811581-1	chr11	59811481	59811681	+	633.0	f0_balb.idr	intron (NR_045686, intron 1 of 1)	intron (NR_045686, intron 1 of 1)	1501.0	NR_045686	100504104.0	Mm.391737	NR_045686	ENSMUSG00000087249	Gm16062	-	predicted gene 16062	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-82859179-4	chr10	82859081	82859281	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015762)	promoter-TSS (NM_015762)	-25.0	NM_001042513	50493.0	Mm.210155	NM_015762	ENSMUSG00000020250	Txnrd1	TR|TR1|TrxR1	thioredoxin reductase 1	protein-coding	7.14867717512866	7.12143282813468	7.22341395117857	7.05137469889317	7.33567972173173	7.69160977998014	7.32676286838144	7.60796425166663	0.375667118249238	0.0165511108281137	0.1555458702734
Merged-chr9-14147264-2	chr9	14147164	14147364	+	732.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-129037.0	NM_030261	75747.0	Mm.325126	NM_030261	ENSMUSG00000032009	Sesn3	5630400E15Rik|BC003348|SEST3	sestrin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-16847453-4	chr12	16847348	16847548	+	809.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR33|LTR|ERVL	36483.0	NM_033270	50496.0	Mm.23296	NM_033270	ENSMUSG00000057469	E2f6	AI462434|E2F6a|E2F6b|EMA	E2F transcription factor 6	protein-coding	0.534601689755146	1.23509278046272	0.916778488952793	0.731999831975686	0.964203513498982	1.46782414951425	0.558221490808433	0.735679038126085	0.480089727025364	0.754366629142031	0.998431161219273
Merged-chr9-95954787-4	chr9	95954673	95954873	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011916)	promoter-TSS (NM_011916)	13.0	NM_011916	24127.0	Mm.291179	NM_011916	ENSMUSG00000032410	Xrn1	Dhm2|exo|mXrn1	5'-3' exoribonuclease 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-31767295-2	chr2	31767195	31767395	+	814.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001283045, intron 1 of 10)	(CTGTG)n|Simple_repeat|Simple_repeat	7122.0	NM_001283045	11350.0	Mm.1318	NM_009594	ENSMUSG00000026842	Abl1	AI325092|Abl|E430008G22Rik|c-Abl	c-abl oncogene 1, non-receptor tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-66107294-2	chr5	66107194	66107394	+	602.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001127382, intron 2 of 7)	intron (NM_001127382, intron 2 of 7)	-9115.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115412057-2	chr11	115411957	115412157	+	777.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001347645, exon 6 of 6)	3' UTR (NM_001347645, exon 6 of 6)	7862.0	NM_027862	71679.0	Mm.371641	NM_027862	ENSMUSG00000034566	Atp5h	0610009D10Rik	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-61557633-2	chr14	61557533	61557733	+	646.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025697)	promoter-TSS (NM_025697)	-747.0	NM_001310603	66674.0	Mm.282706	NM_025697	ENSMUSG00000021930	Spryd7	6330409N04Rik|Clld6	SPRY domain containing 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-42860276-4	chr10	42860155	42860355	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172938)	promoter-TSS (NM_172938)	-257.0	NM_172938	268297.0	Mm.98731	NM_172938	ENSMUSG00000044770	Scml4	9330161D17|mFLJ00197	Scm polycomb group protein like 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-78532233-4	chr9	78532108	78532308	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50484.0	NM_010106	13627.0	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19756392-2	chr7	19756292	19756492	+	632.625	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_020486, exon 15 of 15)	3' UTR (NM_020486, exon 15 of 15)	-6819.0	NM_001159724	19294.0	Mm.4341	NM_008990	ENSMUSG00000062300	Nectin2	AI325026|AI987993|Cd112|MPH|Pvr|Pvrl2|Pvs|nectin-2	nectin cell adhesion molecule 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27476670-2	chr2	27476570	27476770	+	541.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113574)	promoter-TSS (NM_001113574)	-997.0	NM_001113574	67382.0	Mm.28721	NM_023336	ENSMUSG00000026918	Brd3	2410084F24Rik|AW060456|Fsrg2|ORFX|RINGL3	bromodomain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-87695524-3	chr16	87695419	87695619	+	756.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3435.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-40090557-2	chr10	40090457	40090657	+	731.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 1 of 5)	RMER19B|LTR|ERVK	51697.0	NM_028247	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-50304498-2	chr6	50304398	50304598	+	702.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_027881, intron 18 of 21)	PB1D10|SINE|Alu	-42729.0	NM_018769	54722.0	Mm.248361	NM_018769	ENSMUSG00000029821	Gsdme	2310037D07Rik|4932441K13Rik|Dfna5|Dfna5h|EG14210|Fin15	gasdermin E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-119247125-2	chr9	119247025	119247225	+	612.666687	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045693, exon 14 of 19)	non-coding (NR_045693, exon 14 of 19)	-15433.0	NR_033303	109280.0	Mm.261557	NM_175420	ENSMUSG00000092212	Slc22a13b-ps	9330176C04Rik|Slc22a13b	solute carrier family 22 (organic cation transporter), member 13b, pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152802419-2	chr1	152802319	152802519	+	692.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010877, intron 1 of 15)	RLTR17D_Mm|LTR|ERVK	2266.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45051080-3	chr7	45050994	45051194	+	701.277771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175022, intron 2 of 13)	intron (NM_175022, intron 2 of 13)	1787.0	NM_175022	233210.0	Mm.219137	NM_175022	ENSMUSG00000046574	Prr12	6720469B10|BC058674	proline rich 12	protein-coding	-1.69986312423686	-1.81314243252593	-1.82225744210362	-1.82974478236248	-1.84116796638235	-1.66774645889968	-1.82019400373055	-1.82840455203593	0.0376840119903864	0.991491645451152	1
Merged-chr16-35803817-3	chr16	35803666	35803866	+	978.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152314, intron 3 of 8)	intron (NR_152314, intron 3 of 8)	33380.0	NM_175111	66667.0	Mm.45272	NM_175111	ENSMUSG00000022849	Hspbap1	3830421G21Rik	Hspb associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-113453679-4	chr2	113453536	113453736	+	917.341675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285459, intron 2 of 16)	ORR1E|LTR|ERVL-MaLR	12572.0	NM_001285459	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-98676945-3	chr10	98676815	98677015	+	838.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-237727.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67636732-4	chr10	67636633	67636833	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64774.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-17394500-4	chr17	17394409	17394609	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_025934, exon 10 of 10)	3' UTR (NM_025934, exon 10 of 10)	-8177.0	NM_025681	66643.0	Mm.268018	NM_025681	ENSMUSG00000047786	Lix1	5730466L18Rik	limb and CNS expressed 1	protein-coding	6.34222592028645	6.34343887190871	6.11700018219853	6.57025900450346	6.3693064972383	6.9304369970052	5.58537251850744	6.54363998687139	0.0864607529789492	0.735049650474094	0.998431161219273
Merged-chr4-41304520-3	chr4	41304426	41304626	+	935.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026893, intron 2 of 8)	intron (NM_026893, intron 2 of 8)	10375.0	NM_026893	68970.0	Mm.28891	NM_026893	ENSMUSG00000028436	Dcaf12	1500001L20Rik|5830424K06Rik|AA420338|AI851081|Wdr40a	DDB1 and CUL4 associated factor 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-130059781-2	chr3	130059681	130059881	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_207209, intron 1 of 23)	intron (NM_207209, intron 1 of 23)	1126.0	NM_207209	99683.0	Mm.192303	NM_207209	ENSMUSG00000001052	Sec24b	AI605202|SEC24	Sec24 related gene family, member B (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141860700-4	chr4	141860608	141860808	+	759.549988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025994, intron 2 of 3)	intron (NM_025994, intron 2 of 3)	14212.0	NM_025994	27984.0	Mm.395598	NM_025994	ENSMUSG00000040659	Efhd2	2600015J22Rik|AA408606|D4Wsu27e	EF hand domain containing 2	protein-coding	0.430833667053696	0.47992922280689	1.34668129316099	0.452033067896664	0.644081207334734	2.00387106926596	0.467845095358509	1.17827476855208	1.79520117800554	0.276898819687837	0.781366007374687
Merged-chr17-26530548-1	chr17	26530448	26530648	+	587.0	f1_c57bl6.idr	Intergenic	Intergenic	-22076.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	2.17383899178925	2.3396140950726	2.25818678841941	2.29461889186877	1.18497489267395	1.54417241480093	2.64989363538197	1.65561018430099	-0.894682775862498	0.374233834333369	0.867141279322472
Merged-chr14-65871482-2	chr14	65871382	65871582	+	555.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34180.0	NM_145944	67179.0	Mm.214576	NM_145944	ENSMUSG00000022035	Ccdc25	2610528H13Rik|NSrp70	coiled-coil domain containing 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-99212859-4	chr9	99212732	99212932	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MEc|LINE|L1	24407.0	NM_001244762	623459.0	Mm.260891	NM_001244762	ENSMUSG00000096316	Faiml	EG623459|Gm6432	Fas apoptotic inhibitory molecule like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-85519064-3	chr17	85518965	85519165	+	644.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	99331.0	NR_038084	100043902.0	Mm.150838	NR_015385	ENSMUSG00000093460	Six3os1	D17Mgi26|E130112H22Rik|Rncr1|Six3os	SIX homeobox 3, opposite strand 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-48750043-4	chr7	48749861	48750061	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39042.0	NM_028031	243983.0	Mm.279116	NM_028031	ENSMUSG00000030471	Zdhhc13	2410004E01Rik|C530010M18|HIP3RP|Hip14l|kojak|skc4	zinc finger, DHHC domain containing 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-121109450-2	chr8	121109350	121109550	+	782.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	-1071.0	NM_001166482	234814.0	Mm.31690	NM_172761	ENSMUSG00000031816	Mthfsd	AW049977|BC052066|C920004D05	methenyltetrahydrofolate synthetase domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-106458879-1	chr6	106458779	106458979	+	814.666687	f0_balb.idr	intron (NM_001109749, intron 8 of 25)	intron (NM_001109749, intron 8 of 25)	290158.0	NM_008370	16192.0	Mm.3448	NM_008370	ENSMUSG00000005364	Il5ra	CD125|CDw125|Il5r	interleukin 5 receptor, alpha	protein-coding	-0.0426300059533425	0.13455038012712	-0.0351776937764647	-0.0380011077561997	0.371021663087661	0.402512259004383	0.119991152357836	0.103988568796578	2.90843703236916	0.1596833636662	1
Merged-chr8-120566816-2	chr8	120566716	120566916	+	725.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145896, intron 4 of 15)	intron (NM_001145896, intron 4 of 15)	22259.0	NM_178856	272551.0	Mm.275910	NM_178856	ENSMUSG00000031821	Gins2	2210013I18Rik|4833427B12Rik|AI323585|Pfs2	GINS complex subunit 2 (Psf2 homolog)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-18798928-4	chr2	18798845	18799045	+	992.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_131254)	TTS (NR_131254)	2873.0	NR_131254	66774.0	Mm.87075	NR_131254	ENSMUSG00000097638	Carlr	4933439G12Rik|Carl	cardiac and apoptosis-related long non-coding RNA	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-92021819-4	chr16	92021736	92021936	+	994.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-36486.0	NM_017391	53881.0	Mm.217354	NM_017391	ENSMUSG00000089774	Slc5a3	AA623876|BF642829|Smit1	solute carrier family 5 (inositol transporters), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-45521757-1	chr9	45521657	45521857	+	673.0	f1_balb.idr	intron (NM_001081270, intron 3 of 32)	intron (NM_001081270, intron 3 of 32)	-90525.0	NR_040732	74602.0	Mm.394117	NR_040732	ENSMUSG00000097074	4833428L15Rik	-	RIKEN cDNA 4833428L15 gene	ncRNA	-1.52696403314699	-1.49523967873556	-1.5048333853602	-1.51271394162622	-1.52473704212565	-1.49316068248889	-1.50266158046844	-1.06847079017215	2.01069003169785	0.564432837776867	1
Merged-chr11-114799925-2	chr11	114799825	114800025	+	648.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_181749, intron 1 of 2)	B2_Mm2|SINE|B2	1001.0	NM_181749	217302.0	Mm.269127	NM_181749	ENSMUSG00000034677	Gpr142	PGR2	G protein-coupled receptor 142	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-180257289-4	chr2	180257189	180257389	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025587)	promoter-TSS (NM_025587)	-90.0	NM_025587	66481.0	Mm.289669	NM_025587	ENSMUSG00000039001	Rps21	1810049N11Rik|2410030A14Rik	ribosomal protein S21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126655903-4	chr7	126655799	126655999	+	904.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029339, intron 1 of 9)	ORR1B1|LTR|ERVL-MaLR	6590.0	NM_029339	75565.0	Mm.45686	NM_029339	ENSMUSG00000030714	Sgf29	1700023O11Rik|9530025I05Rik|Ccdc101	SAGA complex associated factor 29	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-90829703-3	chr8	90829666	90829866	+	884.9722289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177224, intron 1 of 39)	intron (NM_177224, intron 1 of 39)	931.0	NM_177224	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	1.15733563545898	0.463415415168433	0.758507204506921	0.452836946032138	0.893538714820207	0.464772580421139	0.995413271150094	0.453636298529258	-0.165674569740314	0.927735456163855	1
Merged-chr17-27657482-1	chr17	27657382	27657582	+	560.0	f1_balb.idr	intron (NM_001286744, intron 1 of 9)	intron (NM_001286744, intron 1 of 9)	1891.0	NM_001286743	23969.0	Mm.4926	NM_011861	ENSMUSG00000040276	Pacsin1	A830061D09Rik|H74|mKIAA1379|syndapin	protein kinase C and casein kinase substrate in neurons 1	protein-coding	0.0313675941825707	0.228298680164761	0.041336001682131	0.438851582387331	0.486244296605952	0.047327689959333	0.0424122197987638	0.547433283333744	0.846866718402409	0.688829232903416	1
Merged-chr10-60260774-4	chr10	60260662	60260862	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16866.0	NM_001146123	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-115178343-3	chr13	115178221	115178421	+	629.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-76357.0	NM_001033228	109700.0	Mm.317280	NM_001033228	ENSMUSG00000042284	Itga1	CD49A|E130012M19Rik|Vla1	integrin alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-145938522-3	chr3	145938418	145938618	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025555, intron 1 of 2)	CpG	504.0	NR_151446	66421.0	Mm.25137	NM_025555	ENSMUSG00000036873	2410004B18Rik	4930572C24Rik	RIKEN cDNA 2410004B18 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-36870202-1	chr17	36870102	36870302	+	543.0	f1_balb.idr	exon (NM_011280, exon 1 of 7)	exon (NM_011280, exon 1 of 7)	628.0	NM_011280	19824.0	Mm.299155	NM_011280	ENSMUSG00000073400	Trim10	AI324236|BB139825|Herf1|Rnf9	tripartite motif-containing 10	protein-coding	0.437591074905618	0.080382787382179	0.833673272141827	0.0702621953505418	0.446201310934521	0.0816698888749393	0.256264091202499	0.0710325955627535	-1.26132249879109	0.540774174180685	1
Merged-chr8-122928979-4	chr8	122928880	122929080	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 2 of 12)	intron (NM_001081379, intron 2 of 12)	80606.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-66087679-2	chr9	66087579	66087779	+	885.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_019727)	TTS (NM_019727)	-17948.0	NM_001025612	382083.0	Mm.477103	NM_001025612	ENSMUSG00000039452	Snx22	Gm1120	sorting nexin 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-92348941-4	chr5	92348802	92349002	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021274)	promoter-TSS (NM_021274)	-13.0	NM_021274	15945.0	Mm.877	NM_021274	ENSMUSG00000034855	Cxcl10	C7|CRG-2|INP10|IP-10|IP10|Ifi10|Scyb10|gIP-10|mob-1	chemokine (C-X-C motif) ligand 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-123539289-4	chr9	123539172	123539372	+	910.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357485, intron 1 of 19)	intron (NM_001357485, intron 1 of 19)	9519.0	NM_030692	83493.0	Mm.273671	NM_030692	ENSMUSG00000025240	Sacm1l	SAC1|Sac1p|mKIAA0851	SAC1 suppressor of actin mutations 1-like (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135613053-4	chr5	135612941	135613141	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19613.0	NM_001357037	215160.0	Mm.295438	NM_031398	ENSMUSG00000039917	Rhbdd2	0610011L13Rik|AI480532|Rhbdl7|Usmg1	rhomboid domain containing 2	protein-coding	4.81407716873548	5.10697736596071	4.73289200625027	4.60682027876513	5.94215345346001	5.39942149787884	5.45977647384895	5.10282670152946	0.811793340671561	0.0103353337321468	0.111446974941549
Merged-chr18-38210045-2	chr18	38209945	38210145	+	631.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029357)	promoter-TSS (NM_029357)	-283.0	NM_029357	75599.0	Mm.36560	NM_029357	ENSMUSG00000051375	Pcdh1	2010005A06Rik|AI585920	protocadherin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-113649188-2	chr6	113649088	113649288	+	684.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 2 of 11)	intron (NM_001113553, intron 2 of 11)	10721.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-39968206-3	chr15	39968077	39968277	+	993.2000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_045719)	TTS (NR_045719)	5528.0	NR_045719	105976.0	Mm.394885	NR_045719		AU022793	-	expressed sequence AU022793	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-62244599-2	chr14	62244499	62244699	+	736.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48380.0	NM_173419	239133.0	Mm.127330	NM_173419	ENSMUSG00000048281	Dleu7	BC038059	deleted in lymphocytic leukemia, 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101112360-1	chr15	101112260	101112460	+	687.0	f1_c57bl6.idr	Intergenic	L1MA8|LINE|L1	-3395.0	NM_144790	208258.0	Mm.152952	NM_144790	ENSMUSG00000047034	Ankrd33	A930021G21Rik|Panky|Panky-a	ankyrin repeat domain 33	protein-coding	0.7378075502547	0.182961070933554	0.176419242263675	0.17135814418268	0.557799938721101	0.931078904020805	0.17786378947751	0.343747219337548	1.19524739343016	0.546674574588699	1
Merged-chr2-180618787-1	chr2	180618687	180618887	+	629.0	f1_balb.idr	intron (NM_009936, intron 30 of 31)	intron (NM_009936, intron 30 of 31)	20565.0	NM_009936	12841.0	Mm.141312	NM_009936	ENSMUSG00000027570	Col9a3	AV006866	collagen, type IX, alpha 3	protein-coding	-2.05752322593321	-2.15521190974092	-2.16307242109104	-2.16952927915413	-2.17938029103484	-2.15350850414045	-2.16129297361887	-2.16837350464794	-0.683654500252594	0.846597994014493	1
Merged-chr1-7397055-4	chr1	7396967	7397167	+	993.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	308147.0	NM_183028	319263.0	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-122099662-2	chr10	122099554	122099754	+	742.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A2|LTR|ERVL-MaLR	-2552.0	NM_153059	216395.0	Mm.236764	NM_153059	ENSMUSG00000034620	Tmem5	6330415D21Rik	transmembrane protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-22041365-4	chr13	22041273	22041473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175656)	promoter-TSS (NM_175656)	-11.0	NM_175656	319158.0	Mm.14775	NM_175656	ENSMUSG00000060639	Hist1h4i	-	histone cluster 1, H4i	protein-coding	4.11752964971906	4.79002535203896	3.20328678529074	3.4208078301798	4.27867115325239	4.28560612424038	3.9582681014258	3.61442162657838	0.0414368396758667	0.935119093898956	0.998431161219273
Merged-chr14-101529415-1	chr14	101529315	101529515	+	746.0	f0_balb.idr	intron (NM_001081278, intron 1 of 18)	intron (NM_001081278, intron 1 of 18)	79776.0	NM_001081278	210789.0	Mm.320639	NM_173380	ENSMUSG00000033083	Tbc1d4	5930406J04Rik|A930035N22|AV295684|As160	TBC1 domain family, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116626566-4	chr11	116626457	116626657	+	864.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172572, intron 1 of 18)	intron (NM_172572, intron 1 of 18)	462.0	NM_172572	217344.0	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-54477008-2	chr18	54476908	54477108	+	606.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54713.0	NR_040338	77433.0	Mm.159919	NR_040338		Redrum	9430076G02Rik	Redrum, erythroid developmental long intergenic non-protein coding transcript	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-82799897-3	chr3	82799808	82800008	+	830.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	76575.0	NM_001277170	633285.0	Mm.265114	NM_001146328	ENSMUSG00000033882	Rbm46	EG633285|Gm761	RNA binding motif protein 46	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-155162901-4	chr4	155162769	155162969	+	976.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011385, intron 1 of 6)	intron (NM_011385, intron 1 of 6)	59666.0	NM_011385	20481.0	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117376501-4	chr10	117376392	117376592	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013391, intron 1 of 9)	CpG	481.0	NM_001013391	432508.0	Mm.478881	NM_001013391	ENSMUSG00000055531	Cpsf6	4733401N12Rik|AI256641|CFIM|CFIM68|HPBRII-4|HPBRII-7	cleavage and polyadenylation specific factor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-139198240-4	chr4	139198142	139198342	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	4131.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	4.36455861650401	4.84665345962603	3.3054295158088	4.66317719796545	4.48001233323373	4.47435287763644	4.64431971750727	4.83585306944413	0.264860901692759	0.526452352198662	0.94877971795044
Merged-chr10-111180207-2	chr10	111180107	111180307	+	569.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001003717, intron 1 of 22)	intron (NM_001003717, intron 1 of 22)	15405.0	NM_175489	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6364528-4	chr19	6364391	6364591	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360393, intron 1 of 11)	CpG	801.0	NR_122118	22668.0	Mm.256422	NM_011750	ENSMUSG00000024949	Sf1	BBP|MZFM|WBP4|Zfp162	splicing factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-44985144-1	chr19	44985044	44985244	+	666.0	f1_balb.idr	promoter-TSS (NR_040294)	promoter-TSS (NR_040294)	-594.0	NR_040294	73894.0	Mm.491408	NR_040294		4930414N06Rik	-	RIKEN cDNA 4930414N06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-126436581-2	chr4	126436481	126436681	+	588.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001317173, exon 19 of 19)	3' UTR (NM_001317173, exon 19 of 19)	-7039.0	NM_153402	214150.0	Mm.440915	NM_153402	ENSMUSG00000028842	Ago3	AW048688|C130014L07Rik|Eif2c3	argonaute RISC catalytic subunit 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-39009703-2	chr2	39009603	39009803	+	639.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028809, intron 1 of 3)	intron (NM_028809, intron 1 of 3)	1564.0	NM_028809	74192.0	Mm.38155	NM_028809	ENSMUSG00000026755	Arpc5l	2010015J01Rik|AI852867|ARC16-2|AW555592|AW742746	actin related protein 2/3 complex, subunit 5-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45562867-2	chr7	45562767	45562967	+	970.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025330, intron 5 of 8)	intron (NM_025330, intron 5 of 8)	-7286.0	NM_009737	12036.0	Mm.24210	NM_009737	ENSMUSG00000030826	Bcat2	Bcat(m)|Bcat-2|Eca40	branched chain aminotransferase 2, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117841124-3	chr10	117841029	117841229	+	862.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024457, intron 1 of 7)	intron (NM_024457, intron 1 of 7)	4845.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-65492957-4	chr5	65492846	65493046	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133697)	promoter-TSS (NM_133697)	-111.0	NM_133697	68552.0	Mm.10709	NM_133697	ENSMUSG00000037822	Smim14	1110003E01Rik|1700127H04Rik|5430439C17Rik|MAd4	small integral membrane protein 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85386717-2	chr12	85386617	85386817	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12000.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26534904-4	chr17	26534785	26534985	+	997.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26413.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	3.08922668611067	4.86730984278844	3.81226466055168	4.0261389277285	3.21416350165428	4.86125812254883	3.04706141706744	3.48192260912375	-0.309695537986999	0.603224058402607	0.973565005745828
Merged-chr3-108346069-3	chr3	108345935	108346135	+	932.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019972, intron 13 of 19)	intron (NM_019972, intron 13 of 19)	-18876.0	NM_026831	68753.0	Mm.75201	NM_026831	ENSMUSG00000068745	Mybphl	1110037P11Rik	myosin binding protein H-like	protein-coding	0.514347371793999	2.10324162697436	0.558899136004469	0.542630852268468	0.518663263733003	1.84028028164018	0.563452448335807	1.78008694704922	0.456700542228547	0.889020415088853	0.998431161219273
Merged-chr2-155135925-4	chr2	155135795	155135995	+	842.4583130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001243712, intron 1 of 25)	URR1B|DNA|hAT-Charlie	2414.0	NM_008395	16396.0	Mm.208286	NM_008395	ENSMUSG00000027598	Itch	6720481N21Rik|8030492O04Rik|A130065M08|AIP4|C230047C07Rik	itchy, E3 ubiquitin protein ligase	protein-coding	1.1358915576516	1.76174768196567	0.562228756216256	0.939710845103161	0.535144485353074	0.579385168810417	0.565353642815313	1.62978875188118	-0.890633216825106	0.585929055894482	0.967449368090758
Merged-chr11-101253770-4	chr11	101253682	101253882	+	983.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001284414)	promoter-TSS (NM_001284414)	75.0	NM_026776	28084.0	Mm.301020	NM_026776	ENSMUSG00000078656	Vps25	1110020N13Rik|AW107467|D11Wsu68e	vacuolar protein sorting 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-65642930-2	chr7	65642830	65643030	+	915.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-1968.0	NM_172310	272396.0	Mm.35127	NM_172310	ENSMUSG00000030515	Tarsl2	A530046H20Rik	threonyl-tRNA synthetase-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99395156-1	chr15	99395056	99395256	+	642.0	f1_c57bl6.idr	intron (NM_001171036, intron 2 of 10)	intron (NM_001171036, intron 2 of 10)	1937.0	NM_001171035	110213.0	Mm.16769	NM_026669	ENSMUSG00000023010	Tmbim6	5031406P05Rik|Bi1|Tegt	transmembrane BAX inhibitor motif containing 6	protein-coding	-1.18378942727406	-1.15669478905697	-0.457913181653105	-1.17806440097404	-1.18323730008524	-1.15415234459186	-1.16577117532349	-1.17633933179771	-2.81844548480871	0.412768592413622	1
Merged-chr15-50887379-2	chr15	50887279	50887479	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_032000, intron 1 of 5)	intron (NM_032000, intron 1 of 5)	1670.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-145001734-2	chr7	145001643	145001843	+	618.25	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-61818.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	-0.0724670859883757	-0.0587555158714491	-0.0632670922569036	0.218257270897341	0.380539629692218	0.12724845564832	-0.0622736706667138	0.441565481547522	2.07348347970496	0.349035160254398	1
Merged-chr9-120572915-2	chr9	120572815	120573015	+	597.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025974, intron 3 of 5)	intron (NM_025974, intron 3 of 5)	1398.0	NM_025974	67115.0	Mm.289810	NM_025974	ENSMUSG00000025794	Rpl14	3100001N19Rik|AA407502|AL022816|CAG-ISL-7|CTG-B33|L14	ribosomal protein L14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127008356-4	chr7	127008247	127008447	+	956.224976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080638, intron 1 of 14)	intron (NM_080638, intron 1 of 14)	6247.0	NM_080638	78388.0	Mm.228797	NM_080638	ENSMUSG00000030681	Mvp	2310009M24Rik|LRP|VAULT1	major vault protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-25585771-2	chr14	25585671	25585871	+	563.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 6 of 23)	intron (NM_183208, intron 6 of 23)	-1033.0	NR_033492	77592.0	Mm.444871	NM_175264		4931406H21Rik	-	RIKEN cDNA 4931406H21 gene	ncRNA	-0.662826441749988	-1.00555184936033	-1.01675512286785	-1.01992432642343	-0.654846858003193	-1.00312405325568	-1.01421894731451	-1.01959449741028	0.0418081237259606	0.989738874530268	1
Merged-chr6-47454560-5	chr6	47454493	47454693	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355550)	promoter-TSS (NM_001355550)	-164.0	NM_001355550	26965.0	Mm.87611	NM_012042	ENSMUSG00000029686	Cul1	Cul-1	cullin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-27741252-2	chr11	27741152	27741352	+	546.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	843072.0	NM_001166661	216613.0	Mm.93759	NM_181577	ENSMUSG00000032878	Ccdc85a	-	coiled-coil domain containing 85A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-33928433-4	chr8	33928358	33928558	+	909.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042675, intron 1 of 6)	intron (NM_001042675, intron 1 of 6)	1405.0	NM_019733	19663.0	Mm.323997	NM_019733	ENSMUSG00000031586	Rbpms	2010300K22Rik|2700019M19Rik|AU017537|RBP-MS|hermes	RNA binding protein gene with multiple splicing	protein-coding	0.22228754832649	0.283306473279037	0.62249262783627	0.247976186033447	0.340416540434948	0.287791413777353	0.104355160513649	0.250671111437385	-0.875273473060553	0.623571505748117	1
Merged-chr18-56722935-3	chr18	56722854	56723054	+	856.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010721, intron 1 of 10)	intron (NM_010721, intron 1 of 10)	15141.0	NM_010721	16906.0	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-75838177-3	chr10	75838094	75838294	+	860.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3313.0	NM_010361	14872.0	Mm.24118	NM_010361	ENSMUSG00000033318	Gstt2	AI266894|Yrs|mGSTT2	glutathione S-transferase, theta 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-13666116-3	chr8	13666019	13666219	+	969.1333619999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 1 of 23)	intron (NM_009025, intron 1 of 23)	11468.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-117116130-4	chr5	117115993	117116193	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178622)	promoter-TSS (NM_178622)	-100.0	NM_178622	71954.0	Mm.34456	NM_178622	ENSMUSG00000066900	Suds3	2400003N08Rik|2410008L21Rik|AU067672|mSds3	suppressor of defective silencing 3 homolog (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-110715817-4	chr7	110715690	110715890	+	984.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52416.0	NM_001276301	11717.0	Mm.3238	NM_009667	ENSMUSG00000005686	Ampd3	-	adenosine monophosphate deaminase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-10078584-2	chr2	10078484	10078684	+	881.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_020615, intron 1 of 9)	intron (NM_020615, intron 1 of 9)	1926.0	NM_020615	11949.0	Mm.12677	NM_020615	ENSMUSG00000025781	Atp5c1	1700094F02Rik|Atp5f1c	ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-114984847-1	chr13	114984747	114984947	+	714.0	f0_balb.idr	intron (NM_001033228, intron 18 of 28)	intron (NM_001033228, intron 18 of 28)	-52747.0	NM_008396	16398.0	Mm.5007	NM_008396	ENSMUSG00000015533	Itga2	CD49B|DX5|GPIa	integrin alpha 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-36909943-2	chr19	36909843	36910043	+	697.025024	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9656.0	NM_028263	72514.0	Mm.41674	NM_028263	ENSMUSG00000047632	Fgfbp3	2610306H15Rik|Fgf-bp3	fibroblast growth factor binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-57280369-4	chr16	57280290	57280490	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027651, intron 3 of 7)	intron (NM_027651, intron 3 of 7)	12461.0	NM_027651	71027.0	Mm.158563	NM_027651	ENSMUSG00000022753	Tmem30c	4933401B01Rik|4933409A18Rik|Cdc50c	transmembrane protein 30C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165337258-2	chr2	165337158	165337358	+	732.125	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-10779.0	NM_207706	140579.0	Mm.35064	NM_080287	ENSMUSG00000017670	Elmo2	1190002F24Rik|CED-12	engulfment and cell motility 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-96481652-2	chr9	96481552	96481752	+	700.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2977.0	NM_001311135	19823.0	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28381189-4	chr7	28381112	28381312	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1984.0	NM_011756	22695.0	Mm.389856	NM_011756	ENSMUSG00000044786	Zfp36	Gos24|Nup475|TIS11D|TISII|Tis11|Ttp|Zfp-36	zinc finger protein 36	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-38892251-4	chr6	38892148	38892348	+	960.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16058.0	NM_001294143	15258.0	Mm.23790	NM_010433	ENSMUSG00000061436	Hipk2	1110014O20Rik|B230339E18Rik|Stank	homeodomain interacting protein kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122762743-6	chr8	122762635	122762835	+	808.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_151739)	promoter-TSS (NR_151739)	26.0	NR_151739	382036.0	Mm.132367	NR_151739		A530010L16Rik	BC032935|Gm1908|Gm45801	RIKEN cDNA A530010L16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-53257193-3	chr19	53257130	53257330	+	722.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2025.0	NR_036590	69319.0	Mm.57452	NR_036590		1700001K23Rik	-	RIKEN cDNA 1700001K23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-87946746-2	chr3	87946646	87946846	+	680.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1947.0	NM_007759	12904.0	Mm.4757	NM_007759	ENSMUSG00000004885	Crabp2	AI893628|Crabp-2|CrabpII	cellular retinoic acid binding protein II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-128806892-4	chr4	128806865	128807065	+	938.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081098)	promoter-TSS (NM_001081098)	-853.0	NM_001081098	230761.0	Mm.22616	NM_001081098	ENSMUSG00000028799	Zfp362	-	zinc finger protein 362	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-67230362-2	chr7	67230262	67230462	+	642.666687	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001291191)	TTS (NM_001291191)	7746.0	NM_001191051	75099.0	Mm.121691	NM_175215	ENSMUSG00000043831	Lysmd4	4930506D23Rik	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-25040614-4	chr8	25040517	25040717	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_031257, exon 12 of 12)	3' UTR (NM_031257, exon 12 of 12)	-1655.0	NM_001081187	330723.0	Mm.334452	NM_001081187	ENSMUSG00000037406	Htra4	B430206E18Rik	HtrA serine peptidase 4	protein-coding	2.49773906859671	1.23083884711979	2.20377395337763	1.41272181945072	1.53893506266123	1.89129014162519	2.42175881020579	2.25201124533508	0.273602039447265	0.793139023513917	0.998431161219273
Merged-chr10-63223273-4	chr10	63223171	63223371	+	934.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19319.0	NM_182992	68802.0	Mm.259767	NM_182992	ENSMUSG00000020067	Mypn	1110056A04Rik|9830112J03|AI853556|mKIAA4170	myopalladin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-96552167-4	chr15	96552073	96552273	+	976.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	89789.0	NM_134086	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-132285912-3	chr2	132285822	132286022	+	783.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291039)	promoter-TSS (NM_001291039)	-17.0	NM_001291039	110911.0	Mm.284503	NM_138651	ENSMUSG00000058793	Cds2	5730450N06Rik|5730460C18Rik|AI854580|D2Wsu127e	CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-110271887-4	chr11	110271781	110271981	+	720.325012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_147219, exon 39 of 39)	3' UTR (NM_147219, exon 39 of 39)	-20105.0	NM_001166557	76184.0	Mm.159704	NM_147218	ENSMUSG00000044749	Abca6	6330565N06Rik	ATP-binding cassette, sub-family A (ABC1), member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70605311-3	chr11	70605207	70605407	+	814.06665	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016713, intron 12 of 30)	intron (NM_016713, intron 12 of 30)	-10587.0	NM_001145537	668433.0	Mm.425687	NM_001145537	ENSMUSG00000087279	4930544D05Rik	-	RIKEN cDNA 4930544D05 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-144676661-4	chr3	144676619	144676819	+	725.25	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43616.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	0.545175630605006	0.409371318189696	1.24520611025892	1.35949772341731	0.693310042821029	0.411510642795073	0.606798354691076	0.393664729827138	-2.38386793511348	0.168458901634906	1
Merged-chr17-66101579-4	chr17	66101460	66101660	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001278415)	promoter-TSS (NM_001278415)	-1.0	NM_028388	72900.0	Mm.2206	NM_028388	ENSMUSG00000024099	Ndufv2	2900010C23Rik	NADH dehydrogenase (ubiquinone) flavoprotein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-92468092-2	chr16	92467992	92468192	+	555.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB7|LINE|L1	-1923.0	NM_001081549	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-83865389-2	chr17	83865289	83865489	+	894.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13A|LTR|ERVK	-10971.0	NR_155491	320021.0	Mm.379475	NR_155490		C430042M11Rik	-	RIKEN cDNA C430042M11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-136124454-4	chr1	136124342	136124542	+	944.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6741.0	NR_046170	329253.0	Mm.487858	NR_046167	ENSMUSG00000086264	Gm15850	6530439I21	predicted gene 15850	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30414807-5	chr7	30414686	30414886	+	920.7999880000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011662, intron 3 of 4)	intron (NM_011662, intron 3 of 4)	998.0	NM_011662	22177.0	Mm.46301	NM_011662	ENSMUSG00000030579	Tyrobp	DAP12|KARAP|Ly83	TYRO protein tyrosine kinase binding protein	protein-coding	2.16956800530561	2.98146637696037	2.23718626634352	1.29478716202132	2.46120609308912	2.03539481665619	2.25496150272491	1.90927984880507	-0.29826589550288	0.75153751593594	0.998431161219273
Merged-chr5-105569141-2	chr5	105569041	105569241	+	706.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133897, intron 2 of 3)	intron (NM_133897, intron 2 of 3)	49670.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-110627828-4	chr13	110627732	110627932	+	984.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	232788.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-35901949-4	chr16	35901860	35902060	+	943.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-30578.0	NM_001039530	547253.0	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-137331923-2	chr4	137331823	137332023	+	792.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009861, intron 3 of 5)	intron (NM_009861, intron 3 of 5)	25836.0	NM_009861	12540.0	Mm.1022	NM_009861	ENSMUSG00000006699	Cdc42	AI747189|AU018915	cell division cycle 42	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32451510-4	chr2	32451382	32451582	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164357)	promoter-TSS (NM_001164357)	-12.0	NM_146118	227731.0	Mm.37395	NM_146118	ENSMUSG00000026819	Slc25a25	1110030N17Rik|MCSC|mKIAA1896	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-9605629-4	chr4	9605533	9605733	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177854, intron 3 of 11)	Tigger7|DNA|TcMar-Tigger	38084.0	NM_001177853	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-18049669-2	chr2	18049569	18049769	+	673.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1220.0	NM_028317	72668.0	Mm.102183	NM_028317	ENSMUSG00000054074	Skida1	2810030E01Rik|5730507N06Rik|BB088113|DLN-1	SKI/DACH domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166575787-2	chr2	166575687	166575887	+	723.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 31 of 39)	intron (NM_177782, intron 31 of 39)	11265.0	NR_152154	433503.0	Mm.491336	NR_152154		Gm29679	-	predicted gene, 29679	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-11886559-4	chr11	11886456	11886656	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001190448, intron 1 of 14)	intron (NM_001190448, intron 1 of 14)	3852.0	NM_016672	13195.0	Mm.12906	NM_016672	ENSMUSG00000020182	Ddc	Aadc	dopa decarboxylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-14381580-4	chr9	14381543	14381743	+	878.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028013)	promoter-TSS (NM_028013)	-401.0	NM_028013	71946.0	Mm.41423	NM_028013	ENSMUSG00000037419	Endod1	2210414F18Rik|2310067E08Rik|C85344	endonuclease domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-82235665-1	chr1	82235565	82235765	+	543.0	f0_balb.idr	3' UTR (NM_010570, exon 2 of 2)	3' UTR (NM_010570, exon 2 of 2)	55774.0	NM_010570	16367.0	Mm.4952	NM_010570	ENSMUSG00000055980	Irs1	G972R|IRS-1	insulin receptor substrate 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-113001840-2	chr12	113001740	113001940	+	664.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-1219.0	NM_028193	72308.0	Mm.196721	NM_028193	ENSMUSG00000011158	Brf1	2510002F24Rik|GTF3B|TAF3C|TAFIII90|TFIIIB90|mTFIIIB90	BRF1, RNA polymerase III transcription initiation factor 90 kDa subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-132006327-2	chr1	132006227	132006427	+	926.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-1278.0	NM_007923	13714.0	Mm.254233	NM_007923	ENSMUSG00000026436	Elk4	2310011G17Rik|A130026I01Rik|BB162516|SAP-1|Sap1	ELK4, member of ETS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-75727597-4	chr12	75727497	75727697	+	878.9833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030750, intron 1 of 2)	intron (NM_030750, intron 1 of 2)	8132.0	NM_030750	81535.0	Mm.280199	NM_030750	ENSMUSG00000021054	Sgpp1	AI463453|SPP|SPP1|Spph1	sphingosine-1-phosphate phosphatase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-125389483-4	chr10	125389370	125389570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	G-rich|Low_complexity|Low_complexity	-60507.0	NM_001358496	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118508081-2	chr11	118507981	118508181	+	876.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001024931, intron 5 of 14)	intron (NM_001024931, intron 5 of 14)	31249.0	NM_001359368	217364.0	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-16329874-3	chr1	16329767	16329967	+	617.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111272, intron 11 of 12)	intron (NM_001111272, intron 11 of 12)	189248.0	NM_001347044	29819.0	Mm.216257	NM_025303	ENSMUSG00000025920	Stau2	-	staufen double-stranded RNA binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117452693-2	chr8	117452593	117452793	+	683.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_106045)	promoter-TSS (NR_106045)	-330.0	NR_106045	102466801.0		NR_106045	ENSMUSG00000099062	Mir7077	Gm27774|mmu-mir-7077	microRNA 7077	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-33813239-1	chr17	33813139	33813339	+	828.0	f1_c57bl6.idr	intron (NM_030697, intron 1 of 10)	intron (NM_030697, intron 1 of 10)	2716.0	NM_030697	80880.0	Mm.196330	NM_030697	ENSMUSG00000042099	Kank3	0610013D04Rik|Ankrd47|D17Ertd288e|NG28	KN motif and ankyrin repeat domains 3	protein-coding	1.63558593249953	1.18267688004175	2.28402083747194	2.35238318143395	0.847177134244192	0.920024935872626	0.897287685196013	1.74959122966358	-2.45962624854965	0.0602442799060711	0.36309990136288
Merged-chr12-12249704-4	chr12	12249580	12249780	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12459.0	NM_029758	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	4.61362553787893	4.0331977490265	4.73456063507956	3.63620947416816	4.14521432217842	4.13496282349736	4.195810974221	3.47978882956231	-0.418299139354054	0.359734055056106	0.856306289008338
Merged-chr10-99274824-2	chr10	99274724	99274924	+	678.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	11593.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-43741542-2	chr10	43741442	43741642	+	546.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4616.0	NR_040581	69443.0	Mm.484042	NR_040581	ENSMUSG00000111422	1700027J07Rik	-	RIKEN cDNA 1700027J07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-151499868-3	chr1	151499763	151499963	+	923.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360844, intron 1 of 8)	intron (NM_001360844, intron 1 of 8)	1128.0	NM_001360845	19821.0	Mm.474038	NM_011277	ENSMUSG00000026484	Rnf2	AI326319|AI450156|AU019207|Ring1B|dinG	ring finger protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-27621089-3	chr15	27621001	27621201	+	880.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013792, intron 2 of 6)	intron (NM_001013792, intron 2 of 6)	9592.0	NM_001013792	432940.0	Mm.309164	NM_001013792	ENSMUSG00000046034	Otulin	C79097|Fam105b|m3Sapc|m7-1Sapc	OTU deubiquitinase with linear linkage specificity	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-38310177-2	chr5	38310077	38310277	+	908.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9332.0	NM_013503	13492.0	Mm.167154	NM_013503	ENSMUSG00000039358	Drd5	D5R|Drd-5|Drd1b|Gpcr1	dopamine receptor D5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-108155871-4	chr10	108155783	108155983	+	866.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6517.0	NM_027892	17931.0	Mm.422959	NM_027892	ENSMUSG00000019907	Ppp1r12a	1200015F06Rik|5730577I22Rik|AA792106|AV099298|D10Ertd625e|Mypt1	protein phosphatase 1, regulatory (inhibitor) subunit 12A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89428104-3	chr3	89427994	89428194	+	865.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011368, intron 12 of 12)	intron (NM_011368, intron 12 of 12)	-2120.0	NM_001293766	68911.0	Mm.22521	NM_026869	ENSMUSG00000047824	Pygo2	1190004M21Rik	pygopus 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-53876126-4	chr10	53876002	53876202	+	999.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-125193.0	NM_001081428	75906.0	Mm.436785	NM_001081428	ENSMUSG00000019856	Fam184a	3110012E06Rik|4930438C08Rik|4930589M24Rik	family with sequence similarity 184, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28340795-2	chr7	28340695	28340895	+	751.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR49|LTR|ERVK	-2076.0	NM_013676	20924.0	Mm.285906	NM_013676	ENSMUSG00000003435	Supt5	AL033283|AL033321|AU019549|Spt5|Supt5h	suppressor of Ty 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28430715-4	chr7	28430621	28430821	+	983.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175021, intron 1 of 12)	intron (NM_175021, intron 1 of 12)	5470.0	NM_175021	233033.0	Mm.54120	NM_175021	ENSMUSG00000109336	Samd4b	BC042901	sterile alpha motif domain containing 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135085598-2	chr4	135085498	135085698	+	676.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35047.0	NM_019732	12399.0	Mm.378894	NM_019732	ENSMUSG00000070691	Runx3	AML2|Cbfa3|Pebp2a3	runt related transcription factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-159116315-2	chr3	159116215	159116415	+	738.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_040750, intron 2 of 4)	ORR1A2|LTR|ERVL-MaLR	39951.0	NR_040750	624759.0	Mm.491054	NR_040750	ENSMUSG00000106053	Gm20752	-	predicted gene, 20752	ncRNA	-2.18361151404719	-2.02201993626881	-2.16403530460334	-2.1710062446989	-2.18164157430194	-2.15370992785044	-2.16211418110791	-2.16975844975469	-0.683654500252594	0.846597994014493	1
Merged-chr9-47745811-3	chr9	47745722	47745922	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	72386.0	NR_046048	100038460.0	Mm.447649	NR_046048		Gm10677	-	predicted gene 10677	ncRNA	2.07534067733203	2.72543815159708	2.6232117237543	1.48311978608504	3.3483037553004	4.00066105781299	3.62958381792304	4.09230855212616	2.54981573816313	0.000166305567738469	0.00466199579842559
Merged-chr12-69197173-4	chr12	69197056	69197256	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033222)	promoter-TSS (NR_033222)	-55.0	NR_033222	414085.0	Mm.256223	NR_033222	ENSMUSG00000097061	9330151L19Rik	-	RIKEN cDNA 9330151L19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-43279933-4	chr5	43279836	43280036	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177379, intron 7 of 10)	intron (NM_001177379, intron 7 of 10)	-44582.0	NR_028417	665934.0	Mm.381491	NR_028417	ENSMUSG00000085720	Gm7854	EG665934	predicted gene 7854	ncRNA	3.11447039084869	4.42633299092828	3.29745302636098	4.93989601684806	3.03876046962776	4.50948019680868	3.32578793245143	4.77550024361929	-0.0672001223116445	0.909628083213446	0.998431161219273
Merged-chr17-71486168-8	chr17	71486041	71486241	+	986.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10798.0	NM_028887	74355.0	Mm.194450	NM_028887	ENSMUSG00000024054	Smchd1	4931400A14Rik|AW554188|MommeD1|mKIAA0650	SMC hinge domain containing 1	protein-coding	3.02884558535126	3.11100531302338	3.19406831556372	2.10061548663218	3.127479331328	2.90456457236373	3.45305492704522	3.1220135822236	0.424712087558859	0.51494353867173	0.947106680171193
Merged-chr3-64204965-3	chr3	64204865	64205065	+	844.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-67485.0	NM_001104592	100125586.0	Mm.469888	NM_001104592	ENSMUSG00000043897	Vmn2r2	-	vomeronasal 2, receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-7375350-1	chr13	7375250	7375450	+	546.0	f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-726579.0	NM_001291071	56421.0	Mm.273874	NM_019703	ENSMUSG00000021196	Pfkp	1200015H23Rik|9330125N24Rik|ATP-PFK|PFK-C|PFK-P	phosphofructokinase, platelet	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117333162-2	chr8	117333062	117333262	+	664.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	-16008.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81325718-2	chr10	81325618	81325818	+	812.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_027381, exon 9 of 9)	exon (NM_027381, exon 9 of 9)	-2550.0	NM_001358512	21390.0	Mm.4545	NM_009325	ENSMUSG00000034881	Tbxa2r	TP|TXA2-R	thromboxane A2 receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124121019-2	chr5	124120919	124121119	+	675.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011256, exon 25 of 25)	3' UTR (NM_011256, exon 25 of 25)	4911.0	NM_144509	65105.0	Mm.29430	NM_144509	ENSMUSG00000029404	Arl6ip4	AA408210|AA408365|Aip-4|Srp25	ADP-ribosylation factor-like 6 interacting protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-48870230-6	chr13	48870115	48870315	+	891.986084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011078, intron 1 of 21)	CpG	670.0	NM_011078	18676.0	Mm.486213	NM_011078	ENSMUSG00000038025	Phf2	GRC5	PHD finger protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-85670464-2	chr11	85670364	85670564	+	566.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_138681, intron 24 of 25)	intron (NM_138681, intron 24 of 25)	49280.0	NR_045875	71489.0	Mm.442482	NR_045875	ENSMUSG00000086199	Bcas3os1	8430403D17Rik	breast carcinoma amplified sequence 3, opposite strand 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-3848353-2	chr8	3848253	3848453	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_130905, exon 6 of 6)	3' UTR (NM_130905, exon 6 of 6)	5933.0	NM_130905	170780.0	Mm.52281	NM_130905	ENSMUSG00000040197	Cd209e	SIGNR4|mSIGNR4	CD209e antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-88667082-2	chr8	88666982	88667182	+	942.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145857, intron 4 of 12)	intron (NM_145857, intron 4 of 12)	19735.0	NM_145857	257632.0	Mm.222633	NM_145857	ENSMUSG00000055994	Nod2	ACUG|BLAU|CD|Card15|F830032C23Rik|IBD1|Nlrc2	nucleotide-binding oligomerization domain containing 2	protein-coding	1.03336954689882	1.15690303972628	0.761609512118749	1.21819627645361	1.53364704314221	1.16569656359518	0.764133065383057	1.54033325752857	1.04990057326452	0.450613285738156	0.916866851716177
Merged-chr18-75696642-2	chr18	75696543	75696743	+	876.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_201354, intron 1 of 11)	CpG	1053.0	NM_201354	269037.0	Mm.36745	NM_201354	ENSMUSG00000052928	Ctif	Gm672	CBP80/20-dependent translation initiation factor	protein-coding	2.23802702236858	1.80945386630837	1.54656978419673	2.14389258371094	2.0501300686519	1.82212909361417	3.06224704955562	2.26981262312593	1.02862894297091	0.263187844750521	0.764706432349876
Merged-chr5-137864697-1	chr5	137864597	137864797	+	545.0	f1_balb.idr	Intergenic	Intergenic	-6648.0	NM_133209	170741.0	Mm.347593	NM_133209	ENSMUSG00000066684	Pilrb1	FDFACT|Fdact|Pilrb	paired immunoglobin-like type 2 receptor beta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65909435-2	chr9	65909335	65909535	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019797)	promoter-TSS (NM_019797)	425.0	NM_173185	214897.0	Mm.325816	NM_173185	ENSMUSG00000032384	Csnk1g1	9130020E21Rik	casein kinase 1, gamma 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-113017212-4	chr5	113017113	113017313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-1675.0	NM_177078	320129.0	Mm.285619	NM_177078	ENSMUSG00000042249	Grk3	4833444A01Rik|AI851927|AW551196|Adrbk-2|Adrbk2|Bark-2	G protein-coupled receptor kinase 3	protein-coding	2.72001249438474	3.68151801944294	3.04776534350113	3.34644768186028	2.41377792927608	2.56271840875304	2.47608120937278	2.77898264852681	-1.2493239274663	0.0626526948599036	0.372277308381826
Merged-chr10-79877902-4	chr10	79877791	79877991	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 3 of 4)	intron (NR_038088, intron 3 of 4)	-1776.0	NM_011178	19152.0	Mm.2364	NM_011178	ENSMUSG00000057729	Prtn3	PR3|mPR3	proteinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-58414640-4	chr3	58414540	58414740	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081229)	promoter-TSS (NM_001081229)	-80.0	NM_001081229	72033.0	Mm.218409	NM_001081229	ENSMUSG00000027806	Tsc22d2	1810043J12Rik|5530402M19Rik	TSC22 domain family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71254892-4	chr17	71254813	71255013	+	809.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357337, intron 7 of 7)	intron (NM_001357337, intron 7 of 7)	50259.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	2.5388188440662	3.05867184621067	3.40518205603259	2.14781969180533	2.20254398290212	2.30561014409454	2.53496602317095	3.33020661042866	-0.358659441674939	0.639135320394254	0.982599433509505
Merged-chr10-121494104-4	chr10	121494001	121494201	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17851.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	2.49952980325033	3.3885999255317	2.44267976414951	3.18920400162621	2.81875540852047	2.94893100481498	2.108365842281	3.34335763154135	-0.113633121094273	0.87365635964865	0.998431161219273
Merged-chr10-22286504-2	chr10	22286404	22286604	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177775, intron 4 of 5)	intron (NM_001177775, intron 4 of 5)	13030.0	NM_001177775	667281.0	Mm.484254	NM_001177775	ENSMUSG00000075297	H60b	EG667281	histocompatibility 60b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120609972-2	chr11	120609872	120610072	+	830.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001347615)	TTS (NM_001347615)	1495.0	NM_001347616	208990.0	Mm.29444	NM_153288	ENSMUSG00000044034	Npb	PPL7|mPPL7	neuropeptide B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-35232162-4	chr2	35232067	35232267	+	810.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24192.0	NM_001206367	227753.0	Mm.443	NM_146120	ENSMUSG00000026879	Gsn	ADF	gelsolin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-64809190-2	chr9	64809090	64809290	+	654.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-1821.0	NM_001162917	102442.0	Mm.222473	NM_176935	ENSMUSG00000053641	Dennd4a	AI115600|AI851943|F730015K02Rik	DENN/MADD domain containing 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-16371900-3	chr19	16371792	16371992	+	877.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008139, intron 5 of 6)	MLTR11A|LTR|ERVK	-56888.0	NR_105832	102465218.0		NR_105832	ENSMUSG00000098718	Mir496b	Gm28028|mmu-mir-496b	microRNA 496b	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-45575646-1	chr19	45575546	45575746	+	612.0	f1_balb.idr	intron (NM_172639, intron 4 of 5)	intron (NM_172639, intron 4 of 5)	15061.0	NM_172639	226162.0	Mm.21978	NM_172639	ENSMUSG00000041035	Dpcd	Ndac	deleted in primary ciliary dyskinesia	protein-coding	-0.0171274771265039	-0.259326490843924	-0.263439372218395	-0.266602942072931	0.190542916313934	-0.258397437713912	0.294246272964173	-0.26605087795495	2.06019188140925	0.406120329683926	1
Merged-chr1-88301524-2	chr1	88301424	88301624	+	614.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5188.0	NM_134252	171382.0	Mm.218753	NM_134252	ENSMUSG00000036251	Trpm8	CMR1|LTRPC6|LTrpC-6|TRPP8|Trp-p8	transient receptor potential cation channel, subfamily M, member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70800597-3	chr14	70800509	70800709	+	834.638916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26228.0	NM_010071	13449.0	Mm.243323	NM_010071	ENSMUSG00000022102	Dok2	DokR|Frip|dok-R	docking protein 2	protein-coding	3.56349022585704	3.24576361898176	3.23609187774529	2.14687098699578	2.89788872669417	3.94532258094965	3.15748917219233	4.47638622959842	0.948622127651615	0.13849504637175	0.581001246981908
Merged-chr2-102899401-4	chr2	102899315	102899515	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039150, intron 1 of 13)	intron (NM_001039150, intron 1 of 13)	2250.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-180891484-1	chr2	180891384	180891584	+	680.0	f1_balb.idr	Intergenic	Intergenic	-2556.0	NR_029538	723951.0		NR_029538	ENSMUSG00000065454	Mir124a-3	Mirn124a-3|mir-124-3|mir-124a-3	microRNA 124a-3	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-45000994-4	chr13	45000888	45001088	+	910.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025772, intron 1 of 9)	intron (NM_025772, intron 1 of 9)	1108.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-54998655-4	chr18	54998575	54998775	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6084.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129304673-4	chr2	129304564	129304764	+	941.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010554, intron 5 of 6)	intron (NM_010554, intron 5 of 6)	5308.0	NM_010554	16175.0	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	3.14252898454044	3.11198804041038	3.63839583376177	2.48534124411717	2.95926776419867	2.14893062889385	2.82706093304109	2.01109184778161	-1.09397965384854	0.131201805837564	0.566652003757774
Merged-chr15-88855650-2	chr15	88855550	88855750	+	561.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6544.0	NM_145478	223775.0	Mm.400129	NM_145478	ENSMUSG00000035828	Pim3	BC026639|Kid1	proviral integration site 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124031233-4	chr5	124031143	124031343	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177876, intron 1 of 3)	intron (NM_177876, intron 1 of 3)	1017.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-95324386-3	chr13	95324285	95324485	+	885.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028106)	promoter-TSS (NM_028106)	-440.0	NM_028106	72114.0	Mm.3774	NM_028106	ENSMUSG00000041995	Zbed3	0610037K01Rik|2610005H11Rik|AU018975|AU024588	zinc finger, BED type containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-6157045-2	chr7	6156945	6157145	+	786.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1074.0	NM_001013012	67109.0	Mm.3254	NM_001013012	ENSMUSG00000046792	Zfp787	2210018M03Rik|Znf787	zinc finger protein 787	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-50333682-2	chr9	50333582	50333782	+	577.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	-100500.0	NR_131161	71873.0		NR_131161	ENSMUSG00000110916	2310003N18Rik	-	RIKEN cDNA 2310003N18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98969802-2	chr11	98969702	98969902	+	694.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361954, intron 3 of 7)	intron (NM_001361954, intron 3 of 7)	4930.0	NM_001361954	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-192771163-2	chr1	192771063	192771263	+	933.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144881)	promoter-TSS (NM_144881)	56.0	NM_144881	226861.0	Mm.145857	NM_144881	ENSMUSG00000037375	Hhat	2810432O22Rik|AI462858|AP-2CRE|Skn|Tg(TFAP2A-cre)1Will	hedgehog acyltransferase	protein-coding	0.867224609388834	0.81606610709539	1.0775492800352	1.42357312224225	0.874591833685619	0.821668238859633	0.95311040771909	0.601610361548297	-1.33319042039649	0.357493494181799	1
Merged-chr6-73228558-2	chr6	73228458	73228658	+	562.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER5A1|DNA|hAT-Charlie	-6927.0	NM_001164669	330355.0	Mm.333166	NM_001164669	ENSMUSG00000052861	Dnah6	9830168K20|A730004I20Rik|Dnahc6|mKIAA1697|mdhc6	dynein, axonemal, heavy chain 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-86407147-4	chr1	86407056	86407256	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17795.0	NM_001319227	14767.0	Mm.389159	NM_010341	ENSMUSG00000026237	Nmur1	FM-3|Gpr66|NMU-R1|NMU1R|NmU-R	neuromedin U receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-49188123-4	chr13	49188030	49188230	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013610, intron 1 of 3)	intron (NM_013610, intron 1 of 3)	583.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30534263-2	chr7	30534163	30534363	+	729.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178252, intron 1 of 21)	intron (NM_178252, intron 1 of 21)	797.0	NM_001289670	233071.0	Mm.190704	NM_178252	ENSMUSG00000036882	Arhgap33	AW324378|NOMA-GAP|Snx26|TCGAP	Rho GTPase activating protein 33	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-21785198-2	chr16	21785098	21785298	+	583.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023737, intron 1 of 6)	intron (NM_023737, intron 1 of 6)	2636.0	NM_023737	74147.0	Mm.28100	NM_023737	ENSMUSG00000022853	Ehhadh	1300002P22Rik|HD|L-PBE|LBFP|LBP|MFP|MFP1|PBFE	enoyl-Coenzyme A, hydratase/3-hydroxyacyl Coenzyme A dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-115033710-2	chr14	115033610	115033810	+	578.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9961.0	NR_029785	723905.0		NR_029785	ENSMUSG00000065508	Mir17	Mirn17|mir-17|mmu-mir-17	microRNA 17	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-7931764-4	chr17	7931657	7931857	+	958.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145968, intron 8 of 9)	intron (NM_145968, intron 8 of 9)	5757.0	NM_145968	72536.0	Mm.119680	NM_145968	ENSMUSG00000033450	Tagap	2610315E15Rik|TRD|Tcd-1|Tcd1|Tcd1a|tcs-1|tcs1	T cell activation Rho GTPase activating protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-16949012-3	chr11	16948908	16949108	+	757.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110421, intron 2 of 5)	intron (NR_110421, intron 2 of 5)	2274.0	NR_110421	72735.0	Mm.268598	NR_015469		Eldr	2810442I21Rik|4930500E12Rik|Fabl	Egfr long non-coding downstream RNA	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-21382360-4	chr16	21382259	21382459	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40759.0	NM_001285893	209018.0	Mm.235683	NM_145948	ENSMUSG00000033653	Vps8	AI315068|AU040738|mKIAA0804	VPS8 CORVET complex subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-151608001-3	chr1	151607915	151608115	+	782.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022018, intron 1 of 13)	intron (NM_022018, intron 1 of 13)	36642.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-87575908-2	chr16	87575828	87576028	+	701.25	f0_balb.idr|f1_c57bl6.idr	intron (NM_144854, intron 3 of 4)	intron (NM_144854, intron 3 of 4)	22598.0	NM_144854	224419.0	Mm.194466	NM_144854	ENSMUSG00000025610	Map3k7cl	C21orf7|ORF63|Tak1l	Map3k7 C-terminal like	protein-coding	2.1452310763983	3.58160766876548	1.33327482140227	2.27051670154194	2.88645130008611	1.68162215674473	2.4905207466781	2.40891360617067	-0.337426956853056	0.717679737109954	0.998431161219273
Merged-chr19-46044364-4	chr19	46044303	46044503	+	616.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113408, intron 1 of 10)	intron (NM_001113408, intron 1 of 10)	908.0	NM_001113408	16825.0	Mm.327442	NM_010697	ENSMUSG00000025223	Ldb1	CLIM2|NLI	LIM domain binding 1	protein-coding	-0.393695853632059	-0.751181653761304	-0.754251884853322	-0.756614066174729	-0.20124806483922	-0.750488270562737	-0.753575544849141	-0.756201818088136	0.759966263124917	0.800583933387673	1
Merged-chr16-35764207-4	chr16	35764123	35764323	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153550, intron 1 of 8)	intron (NM_153550, intron 1 of 8)	5133.0	NM_153550	224132.0	Mm.24094	NM_153550	ENSMUSG00000022848	Dirc2	RCC4	disrupted in renal carcinoma 2 (human)	protein-coding	3.73251268006469	3.1289508335526	3.69993422078524	3.52230389644444	3.81650993752991	4.18477475661547	3.72796711854069	3.61668221151752	0.445314833377842	0.36955905115325	0.863423892458138
Merged-chr16-78540569-3	chr16	78540445	78540645	+	920.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001252440, exon 5 of 5)	3' UTR (NM_001252440, exon 5 of 5)	-19771.0	NR_040569	75818.0	Mm.410817	NR_040569		4930478L05Rik	-	RIKEN cDNA 4930478L05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-150672933-4	chr2	150672817	150673017	+	955.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4677.0	NM_080575	68738.0	Mm.7044	NM_080575	ENSMUSG00000027452	Acss1	1110032O15Rik|AI788978|Acas2|Acas2l|AceCS2	acyl-CoA synthetase short-chain family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-11717903-2	chr11	11717803	11718003	+	656.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301865, intron 3 of 6)	intron (NM_001301865, intron 3 of 6)	27726.0	NM_001301863	22778.0	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-186123886-4	chr1	186123798	186123998	+	658.779175	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	-6588.0	NM_146106	226791.0	Mm.257116	NM_146106	ENSMUSG00000039246	Lyplal1	BC027340|Q96AVO	lysophospholipase-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-136117201-4	chr4	136117066	136117266	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26656.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	1.44967788099632	1.8119819650888	2.52626085983226	2.72261714387376	1.05282655319951	1.98584306745136	1.76199620950046	1.33505353041288	-1.72984409554635	0.10691169339044	0.510910713209705
Merged-chr19-5083949-2	chr19	5083849	5084049	+	566.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001885, intron 1 of 1)	intron (NM_001001885, intron 1 of 1)	1528.0	NM_001001885	381199.0	Mm.329663	NM_001001885	ENSMUSG00000061451	Tmem151a	AW125688|Gm961|Tmem151	transmembrane protein 151A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-15563322-2	chr17	15563222	15563422	+	780.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144809)	promoter-TSS (NM_144809)	1.0	NM_144809	213389.0	Mm.215162	NM_144809	ENSMUSG00000051977	Prdm9	BC012016|Dsbc1|G1-419-29|Meisetz|PRDM9-B|Rcr1|repro7	PR domain containing 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-69321461-4	chr10	69321414	69321614	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31398.0	NM_007659	12534.0	Mm.281367	NM_007659	ENSMUSG00000019942	Cdk1	Cdc2|Cdc2a|p34<CDC2>	cyclin-dependent kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-47631753-4	chr6	47631642	47631842	+	933.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23352.0	NR_002841	19799.0		NR_002841		Rn4.5s	-	4.5S RNA	rRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118554697-3	chr9	118554628	118554828	+	932.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018748, intron 14 of 23)	intron (NM_018748, intron 14 of 23)	48410.0	NM_018748	54214.0	Mm.10409	NM_018748	ENSMUSG00000038708	Golga4	AI225887|AU019508|Olp-1	golgi autoantigen, golgin subfamily a, 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-122034502-4	chr7	122034425	122034625	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_026140, exon 9 of 9)	3' UTR (NM_026140, exon 9 of 9)	-13327.0	NM_028758	74105.0	Mm.29619	NM_028758	ENSMUSG00000030872	Gga2	1200007E24Rik|mKIAA1080	golgi associated, gamma adaptin ear containing, ARF binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80072471-2	chr10	80072371	80072571	+	664.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_183426, exon 5 of 32)	exon (NM_183426, exon 5 of 32)	2968.0	NM_001359636	216161.0	Mm.262102	NM_183426	ENSMUSG00000035673	Sbno2	BC019206|F730040C21|Sno|Stno	strawberry notch 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120109356-4	chr8	120109278	120109478	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4774.0	NM_001163762	234797.0	Mm.101958	NM_172286	ENSMUSG00000031824	6430548M08Rik	AW049007|Kiaa0513|mKIAA0513	RIKEN cDNA 6430548M08 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-9882651-2	chr2	9882551	9882751	+	579.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_040511)	TTS (NR_040511)	1405.0	NR_024257	381347.0	Mm.441450	NR_024257		4930412O13Rik	Gm10853	RIKEN cDNA 4930412O13 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-131909995-5	chr4	131909876	131910076	+	896.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_102393, intron 3 of 4)	RLTR31D_MM|LTR|ERVK	10053.0	NR_102394	545681.0	Mm.2478	NR_102393	ENSMUSG00000085667	Gm12992	-	predicted gene 12992	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-34010996-4	chr11	34010913	34011113	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155520, intron 4 of 4)	intron (NR_155520, intron 4 of 4)	-17820.0	NM_001190886	70357.0	Mm.252514	NM_027398	ENSMUSG00000053519	Kcnip1	KCHIP1|Kchip1.2	Kv channel-interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-104033245-1	chr5	104033145	104033345	+	725.0	f0_balb.idr	Intergenic	Intergenic	-11449.0	NM_053262	114664.0	Mm.46019	NM_053262	ENSMUSG00000029311	Hsd17b11	Dhrs8|Pan1b|SDR2|retSDR2	hydroxysteroid (17-beta) dehydrogenase 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-93302900-2	chr13	93302800	93303000	+	578.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001284189)	promoter-TSS (NM_001284189)	-857.0	NM_147176	26556.0	Mm.37533	NM_011982	ENSMUSG00000007617	Homer1	PSD-Zip45|SYN47|Ves-1|homer-1|vesl-1	homer scaffolding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56469708-2	chr17	56469608	56469808	+	709.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252455, intron 1 of 27)	MIRb|SINE|MIR	6772.0	NM_001252455	19280.0	Mm.258771	NM_011218	ENSMUSG00000013236	Ptprs	AL022616|PTP|PTP-NU3|PTPNU-3|PTPsigma|Ptpt9|R-PTP-S|RPTPsigma	protein tyrosine phosphatase, receptor type, S	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-44759233-4	chr18	44759130	44759330	+	981.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001085373, exon 2 of 19)	exon (NM_001085373, exon 2 of 19)	52952.0	NM_001085373	328949.0	Mm.312511	NM_001033406	ENSMUSG00000071856	Mcc	D18Ertd451e|E330037C19	mutated in colorectal cancers	protein-coding	0.132358662688055	0.154223986464117	0.955723477081924	0.141588902723475	0.745260884253535	0.689159247108776	0.148682756615221	0.142555445729228	0.306841527931048	0.884537622145736	1
Merged-chr4-111721108-2	chr4	111721008	111721208	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026470, intron 1 of 12)	intron (NM_026470, intron 1 of 12)	1098.0	NM_026470	67946.0	Mm.275526	NM_026470	ENSMUSG00000034401	Spata6	1700062C23Rik|AI790763|Hash|KRP|Mash	spermatogenesis associated 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97413984-2	chr6	97413884	97414084	+	611.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 4 of 23)	B3|SINE|B2	45302.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-40924512-3	chr14	40924436	40924636	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145928, intron 2 of 8)	MIR3|SINE|MIR	23673.0	NM_001316748	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-103777357-2	chr13	103777257	103777457	+	871.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2749.0	NM_001361085	218543.0	Mm.458176	NM_172592	ENSMUSG00000032621	Srek1	8430401B01|AI450757|AI462342|SRrp508|SRrp86|Sfrs12|Srsf12	splicing regulatory glutamine/lysine-rich protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-25555052-2	chr2	25554952	25555152	+	614.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2848.0	NM_021519	59022.0	Mm.29945	NM_021519	ENSMUSG00000015092	Edf1	0610008L11Rik|AA409425	endothelial differentiation-related factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-69145979-4	chr17	69145889	69146089	+	904.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355732, intron 1 of 21)	intron (NM_001355732, intron 1 of 21)	-10755.0	NM_013813	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3870279-2	chr12	3870179	3870379	+	785.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_007872, intron 4 of 22)	intron (NM_007872, intron 4 of 22)	-8035.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-120841587-2	chr14	120841487	120841687	+	618.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69607.0	NM_023579	70572.0	Mm.221452	NM_023579	ENSMUSG00000030662	Ipo5	1110011C18Rik|5730478E03Rik|AA409333|C76941|IMB3|Kpnb3|Ranbp5|imp5	importin 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-106873098-2	chr3	106872998	106873198	+	737.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-50541.0	NM_146489	258482.0	Mm.377527	NM_146489	ENSMUSG00000043529	Olfr266	MOR122-2	olfactory receptor 266	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-69128327-3	chr3	69128223	69128423	+	786.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1231.0	NM_008467	16649.0	Mm.30601	NM_008467	ENSMUSG00000027782	Kpna4	1110058D08Rik|IPOA3	karyopherin (importin) alpha 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84668881-2	chr8	84668812	84669012	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6060.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	1.47798935402708	1.49187097739816	1.02992327957759	1.91042857178623	1.82196564976259	1.8182318975595	1.03439472125843	2.26032756035546	0.893097874789206	0.452244957422954	0.918447765642932
Merged-chr7-100962125-2	chr7	100962025	100962225	+	978.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_183168, intron 1 of 2)	intron (NM_183168, intron 1 of 2)	2241.0	NM_183168	233571.0	Mm.235193	NM_183168	ENSMUSG00000048779	P2ry6	2010204J23Rik|P2Y6	pyrimidinergic receptor P2Y, G-protein coupled, 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-62039715-2	chr15	62039615	62039815	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_132746, intron 1 of 6)	intron (NR_132746, intron 1 of 6)	458.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128428254-4	chr2	128428154	128428354	+	969.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028591, intron 1 of 1)	intron (NR_028591, intron 1 of 1)	1097.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-30266025-3	chr12	30265919	30266119	+	695.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001324520, intron 8 of 16)	intron (NM_001324520, intron 8 of 16)	107356.0	NM_172951	268534.0	Mm.279765	NM_172951	ENSMUSG00000020672	Sntg2	2210008K22Rik|9530013L23|BB121248|G2syn|Syn5	syntrophin, gamma 2	protein-coding	0.154299618082058	0.0391701426590214	0.331544966335902	0.0312268450783411	0.374028979238939	0.0401872179368951	0.459078900722584	0.311543160687757	1.40218167563125	0.484546198655753	1
Merged-chr7-130547373-4	chr7	130547283	130547483	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162855)	promoter-TSS (NM_001162855)	-2.0	NM_001162855	67872.0	Mm.21714	NM_001162855	ENSMUSG00000040331	Nsmce4a	2410003A14Rik	NSE4 homolog A, SMC5-SMC6 complex component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46795514-4	chr8	46795429	46795629	+	958.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152560, intron 2 of 7)	B1_Mur3|SINE|Alu	55784.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-60559980-3	chr3	60559902	60560102	+	907.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310514, intron 2 of 8)	intron (NM_001310514, intron 2 of 8)	58823.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	2.46801698594773	2.99731302233788	2.4098748740742	3.22127450919598	3.15079254757589	2.79295725640546	1.85475870744696	3.23725681277912	0.0923994049184645	0.901047715558049	0.998431161219273
Merged-chr5-118381534-4	chr5	118381410	118381610	+	975.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	136283.0	NM_001081236	76792.0	Mm.103428	NM_001081236	ENSMUSG00000032840	2410131K14Rik	-	RIKEN cDNA 2410131K14 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-84194828-2	chr12	84194728	84194928	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163502)	promoter-TSS (NM_001163502)	-813.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-102233815-4	chr7	102233738	102233938	+	978.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_111937, intron 2 of 5)	intron (NR_111937, intron 2 of 5)	10810.0	NR_111937	233575.0	Mm.302013	NM_145583	ENSMUSG00000030990	Pgap2	1810006G21Rik|C76649|Frag1	post-GPI attachment to proteins 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-52158291-4	chr6	52158202	52158402	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311118)	promoter-TSS (NM_001311118)	15.0	NM_010449	15394.0	Mm.197	NM_010449	ENSMUSG00000029844	Hoxa1	ERA1|Hox-1.6	homeobox A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-62461008-4	chr2	62460892	62461092	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22661.0	NM_008100	14526.0	Mm.45494	NM_008100	ENSMUSG00000000394	Gcg	GLP-1|Glu|PPG	glucagon	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-75880906-4	chr7	75880823	75881023	+	798.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32585.0	NM_029652	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-121598037-2	chr3	121597937	121598137	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45448.0	NR_036456	100503044.0	Mm.65320	NM_176992	ENSMUSG00000044522	A730020M07Rik	-	RIKEN cDNA A730020M07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153414213-1	chr2	153414113	153414313	+	750.0	f1_balb.idr	intron (NM_001001986, intron 7 of 7)	intron (NM_001001986, intron 7 of 7)	30266.0	NM_001001986	329540.0	Mm.50600	NM_001001986	ENSMUSG00000061411	Nol4l	4931410H15|8430427H17Rik|AI429157|Gm1636	nucleolar protein 4-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-21129729-2	chr19	21129629	21129829	+	874.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25019.0	NR_126458	75354.0	Mm.243873	NR_126458		4930554I06Rik	-	RIKEN cDNA 4930554I06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-6124638-2	chr7	6124538	6124738	+	648.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31333.0	NM_001013012	67109.0	Mm.3254	NM_001013012	ENSMUSG00000046792	Zfp787	2210018M03Rik|Znf787	zinc finger protein 787	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-121591507-4	chr8	121591416	121591616	+	945.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026160, intron 1 of 3)	intron (NM_026160, intron 1 of 3)	1048.0	NM_026160	67443.0	Mm.28357	NM_026160	ENSMUSG00000031812	Map1lc3b	1010001C15Rik|Atg8|LC3b|Map1lc3	microtubule-associated protein 1 light chain 3 beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-51817255-2	chr11	51817155	51817355	+	860.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_199299, exon 12 of 12)	exon (NM_199299, exon 12 of 12)	40226.0	NM_199299	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-79841531-4	chr12	79841433	79841633	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	83200.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-52270083-4	chr3	52270009	52270209	+	995.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019739, intron 1 of 2)	intron (NM_019739, intron 1 of 2)	1772.0	NM_019739	56458.0	Mm.29891	NM_019739	ENSMUSG00000044167	Foxo1	AI876417|Afxh|FKHR|Fkhr1|Foxo1a	forkhead box O1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-42275461-6	chr10	42275312	42275512	+	982.388916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_019740, exon 2 of 4)	exon (NM_019740, exon 2 of 4)	1330.0	NM_019740	56484.0	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107932547-1	chr9	107932447	107932647	+	559.0	f1_c57bl6.idr	TTS (NM_026338)	TTS (NM_026338)	-3373.0	NM_145621	235604.0	Mm.274540	NM_145621	ENSMUSG00000032936	Camkv	1G5|BB074618|BC017634	CaM kinase-like vesicle-associated	protein-coding	0.293448826088199	1.21222112128243	0.131034877292388	1.16458087045951	0.112500045184226	0.142883535744242	0.133187104807968	0.124771133044569	-4.485321313375	0.0232575620180859	1
Merged-chr2-57115395-4	chr2	57115290	57115490	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013613)	promoter-TSS (NM_013613)	-352.0	NM_013613	18227.0	Mm.3507	NM_013613	ENSMUSG00000026826	Nr4a2	HZF-3|NOT|Nurr1|RNR-1|TINOR|TINUR	nuclear receptor subfamily 4, group A, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-19562648-4	chr3	19562545	19562745	+	764.549988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163536, intron 2 of 4)	intron (NM_001163536, intron 2 of 4)	31398.0	NM_001163537	66326.0	Mm.45615	NM_025489	ENSMUSG00000027606	Dnajc5b	1700008A05Rik	DnaJ heat shock protein family (Hsp40) member C5 beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55822670-4	chr14	55822581	55822781	+	974.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2114.0	NM_001168346	73181.0	Mm.27908	NM_023699	ENSMUSG00000023411	Nfatc4	3110041H08Rik|AW107667|AW546455|Nfat3	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-73752199-4	chr18	73752092	73752292	+	952.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053255, intron 1 of 3)	intron (NM_053255, intron 1 of 3)	2287.0	NM_053255	114615.0	Mm.50642	NM_053255	ENSMUSG00000036941	Elac1	2610018O07Rik|8430417G19Rik	elaC ribonuclease Z 1	protein-coding	4.64503964051407	4.65469239591662	3.12955080830039	4.7243246896856	4.77216164290033	3.64100617148437	4.33871939722042	3.90239826119688	-0.237571019738668	0.622597671921241	0.980048132735641
Merged-chr13-95887727-3	chr13	95887608	95887808	+	711.633362	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027711, intron 1 of 35)	intron (NM_027711, intron 1 of 35)	4214.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	1.07994649550491	0.574115579607618	0.932885630521006	1.67100108169005	0.856409238269196	0.576547072675827	0.565652237168046	1.04428996456334	-1.66795632150617	0.289348791154746	0.794926228179246
Merged-chr3-148226645-1	chr3	148226545	148226745	+	551.0	f0_balb.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	727990.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	-0.320893563258355	-0.308059580742977	-0.137982642669618	0.208579273590873	-0.320094483130425	-0.307109023807873	0.257977510738869	-0.314950148645697	-0.180125411788386	0.942216422643997	1
Merged-chr11-106733994-4	chr11	106733865	106734065	+	865.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger12|DNA|TcMar-Tigger	-17261.0	NM_001271375	380732.0	Mm.343952	NM_001033435	ENSMUSG00000040528	Milr1	Allergin-1|Gm885|Mca32	mast cell immunoglobulin like receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-10500916-4	chr16	10500803	10501003	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302619, intron 2 of 19)	MTEb|LTR|ERVL-MaLR	11122.0	NM_001243761	12265.0	Mm.249560	NM_007575	ENSMUSG00000022504	Ciita	C2ta|EG669998|Gm9475|Mhc2ta	class II transactivator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-110600041-2	chr12	110599941	110600141	+	760.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1354.0	NM_030238	13424.0	Mm.181430	NM_030238	ENSMUSG00000018707	Dync1h1	9930018I23Rik|AI894280|DHC1|DHC1a|DNCL|Dnchc1|Dnec1|Dnecl|Loa|MAP1C|P22|Swl|mKIAA0325	dynein cytoplasmic 1 heavy chain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-39619010-4	chr8	39618872	39619072	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113326, intron 5 of 9)	intron (NM_001113326, intron 5 of 9)	23706.0	NM_031195	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	-0.816197293366231	-0.80724490921107	-0.810191369837912	-0.396342611380217	-0.345796718968459	-0.804586221216491	-0.809543431923338	-0.812059261816221	0.217041845743973	0.943328585514677	1
Merged-chr2-14242097-2	chr2	14241997	14242197	+	804.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008625, intron 2 of 29)	B1_Mus1|SINE|Alu	12683.0	NM_008625	17533.0	Mm.2019	NM_008625	ENSMUSG00000026712	Mrc1	AW259686|CD206|MR	mannose receptor, C type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-173276601-4	chr2	173276531	173276731	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022995)	promoter-TSS (NM_022995)	-98.0	NM_022995	65112.0	Mm.73682	NM_022995	ENSMUSG00000038400	Pmepa1	2210418I02Rik|AW455466|Erg1.2|N4wbp4|Stag1|Tmepai	prostate transmembrane protein, androgen induced 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-38002455-3	chr15	38002384	38002584	+	711.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001112721, intron 33 of 58)	intron (NM_001112721, intron 33 of 58)	-41429.0	NM_199476	382985.0	Mm.24738	NM_199476	ENSMUSG00000022292	Rrm2b	p53R2	ribonucleotide reductase M2 B (TP53 inducible)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-41713021-2	chr4	41712921	41713121	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027278, intron 1 of 1)	intron (NM_027278, intron 1 of 1)	496.0	NM_027278	69961.0	Mm.425182	NM_027278	ENSMUSG00000036114	Rpp25l	2810432D09Rik|AW987258|Rppl25	ribonuclease P/MRP 25 subunit-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-63675330-2	chr4	63675230	63675430	+	586.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40909.0	NR_151544	102632940.0	Mm.399154	NR_151544	ENSMUSG00000086817	Gm11482	-	predicted gene 11482	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117348454-2	chr11	117348354	117348554	+	595.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113488, intron 1 of 9)	intron (NM_001113488, intron 1 of 9)	16141.0	NM_001113488	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-156415198-2	chr3	156415098	156415298	+	566.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	146489.0	NR_040398	329782.0	Mm.183459	NR_040398	ENSMUSG00000085084	4930570G19Rik	C630015G22	RIKEN cDNA 4930570G19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-40794127-2	chr17	40794023	40794223	+	648.833374	f0_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009420)	promoter-TSS (NM_009420)	23.0	NM_001204071	22024.0	Mm.1296	NM_009420	ENSMUSG00000023930	Crisp2	CRISP-2|GAPDL5|Tpx-1|Tpx1	cysteine-rich secretory protein 2	protein-coding	4.03852085627443	2.89658016124422	2.66340167205838	3.49601662903686	2.4661091099802	3.25687679675533	2.93897046715648	2.59874276672107	-0.940232772501135	0.158192608652221	0.615978522279375
Merged-chr10-96706878-4	chr10	96706785	96706985	+	941.80835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	89884.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-17545440-2	chr12	17545341	17545541	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013614, intron 1 of 11)	intron (NM_013614, intron 1 of 11)	568.0	NM_013614	18263.0	Mm.34102	NM_013614	ENSMUSG00000011179	Odc1	ODC	ornithine decarboxylase, structural 1	protein-coding	2.67834879655492	2.73205533371484	3.04336013304834	3.34300745409872	3.76834003112958	3.74565086605462	4.06026767153877	3.71929936748852	1.34138669105113	0.0144622949598006	0.141382158965207
Merged-chr8-11100479-3	chr8	11100372	11100572	+	941.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-92042.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-66463436-2	chr15	66463336	66463536	+	626.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019457, intron 4 of 11)	LFSINE_Vert|SINE|tRNA	37474.0	NM_019457	54562.0	Mm.244890	NM_019457	ENSMUSG00000022375	Lrrc6	LRTP	leucine rich repeat containing 6 (testis)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-60877388-2	chr18	60877288	60877488	+	553.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28424.0	NM_001198984	21453.0	Mm.486251	NM_011552	ENSMUSG00000024613	Tcof1	AA408847|AW209012|treacle	treacle ribosome biogenesis factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-21362843-4	chr13	21362741	21362941	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016684)	promoter-TSS (NM_016684)	21.0	NM_016684	22758.0	Mm.24124	NM_016684	ENSMUSG00000036721	Zscan12	2510038J07Rik|FPM315|Zfp96|mKIAA0426|zfp-96	zinc finger and SCAN domain containing 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128774606-2	chr2	128774506	128774706	+	950.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 9 of 18)	Tigger6a|DNA|TcMar-Tigger	-43697.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	0.166690620786306	0.523896569630579	0.0382383143058065	0.648319128476842	0.401412845507828	0.0447045531438976	0.0394013639442027	0.0348824521821481	-1.80622271652579	0.394001028722665	1
Merged-chr7-63908863-4	chr7	63908750	63908950	+	907.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021366, intron 1 of 1)	intron (NM_021366, intron 1 of 1)	-8007.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27970420-3	chr17	27970323	27970523	+	689.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181413, intron 1 of 24)	intron (NM_181413, intron 1 of 24)	61117.0	NM_181413	224650.0	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-22354362-4	chr10	22354162	22354362	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009018, intron 6 of 6)	intron (NM_009018, intron 6 of 6)	-7632.0	NM_020030	56554.0	Mm.458004	NM_020030	ENSMUSG00000078452	Raet1d	RAE-1delta	retinoic acid early transcript delta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-62456889-4	chr11	62456745	62456945	+	827.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177229, intron 1 of 8)	CpG	487.0	NM_177229	20185.0	Mm.271814	NM_011308	ENSMUSG00000018501	Ncor1	5730405M06Rik|A230020K14Rik|N-CoR|RIP13|Rxrip13|mKIAA1047	nuclear receptor co-repressor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-51509425-4	chr6	51509324	51509524	+	944.43335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14479.0	NM_001361582	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	3.55301403033091	3.96482313444056	3.32498619474031	3.7943750952679	3.17101824209347	3.55695978730386	1.72781640676349	3.41502841187864	-0.847184040713453	0.178292981326998	0.648754303465828
Merged-chr14-36969878-2	chr14	36969778	36969978	+	976.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1114.0	NM_027045	72972.0	Mm.27621	NM_027045	ENSMUSG00000058690	Ccser2	1700012P13Rik|2900054P12Rik|AI035535|AW108503|Fam190b|Gcap14	coiled-coil serine rich 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-61243570-4	chr9	61243471	61243671	+	928.4249880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	HAL1ME|LINE|L1	50238.0	NR_045334	622037.0	Mm.126243	NR_045334	ENSMUSG00000111658	B930092H01Rik	-	RIKEN cDNA B930092H01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-46825129-1	chr14	46825029	46825229	+	677.0	f0_balb.idr	Intergenic	Intergenic	-2887.0	NM_022023	63985.0	Mm.87312	NM_022023	ENSMUSG00000062014	Gmfb	3110001H22Rik|3110001O16Rik|AI851627|C79176|D14Ertd630e	glia maturation factor, beta	protein-coding	0.438766119873305	-0.0251009287861966	-0.0306566660045063	-0.0349494292233168	0.349030836787335	0.718284975848118	-0.0294305324441509	-0.03419907466532	1.36529067239402	0.545246923177522	1
Merged-chr7-67426298-3	chr7	67426197	67426397	+	846.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53439.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	2.69172010225277	1.73401637808518	1.88885986223227	2.90340434223846	2.39022689222778	2.44072214243189	2.36111392073481	2.40500910593447	-0.0497227504672502	0.952987651012713	0.998431161219273
Merged-chr6-31119569-2	chr6	31119469	31119669	+	570.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_110471, intron 3 of 3)	intron (NR_110471, intron 3 of 3)	-56476.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-27673292-4	chr15	27673177	27673377	+	925.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198301, intron 1 of 6)	intron (NM_198301, intron 1 of 6)	8265.0	NM_001242424	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-41288761-4	chr12	41288653	41288853	+	732.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053122, intron 4 of 6)	intron (NM_053122, intron 4 of 6)	197304.0	NM_001271708	16981.0	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-120032733-2	chr2	120032668	120032868	+	861.833374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145378)	promoter-TSS (NM_145378)	-665.0	NM_145378	211429.0	Mm.41467	NM_145378	ENSMUSG00000098488	Pla2g4b	A030011C02Rik|Gm1013|cPLA2-beta	phospholipase A2, group IVB (cytosolic)	protein-coding	-1.20406370813143	-1.56956373024278	-1.57884638916872	-1.58647144159385	-1.598104728449	-1.56755213932999	-1.57674499865798	-1.58510656085539	-1.70745470802464	0.626337835847419	1
Merged-chr3-95527635-2	chr3	95527535	95527735	+	605.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021281, intron 1 of 7)	intron (NM_021281, intron 1 of 7)	849.0	NM_001267695	13040.0	Mm.3619	NM_021281	ENSMUSG00000038642	Ctss	Cats	cathepsin S	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-62778249-2	chr4	62778149	62778349	+	599.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	104275.0	NM_001310706	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-51250504-3	chr14	51250408	51250608	+	942.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5604.0	NM_053113	93726.0	Mm.153688	NM_053113	ENSMUSG00000047222	Rnase2a	Ear11	ribonuclease, RNase A family, 2A (liver, eosinophil-derived neurotoxin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-31090004-4	chr17	31089894	31090094	+	938.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009593, intron 2 of 14)	intron (NM_009593, intron 2 of 14)	32300.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-53578462-3	chr17	53578366	53578566	+	694.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151733, intron 1 of 16)	RSINE1|SINE|B4	-5660.0	NM_001190846	18519.0	Mm.255025	NM_020005	ENSMUSG00000000708	Kat2b	A930006P13Rik|AI461839|AW536563|Pcaf|p/CAF	K(lysine) acetyltransferase 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91424950-2	chr16	91424850	91425050	+	669.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_008349, exon 7 of 7)	exon (NM_008349, exon 7 of 7)	18715.0	NM_008349	16155.0	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-40329242-3	chr9	40329180	40329380	+	957.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151734, intron 2 of 18)	intron (NR_151734, intron 2 of 18)	-4192.0	NR_040728	73558.0	Mm.398307	NR_040728		1700110K17Rik	-	RIKEN cDNA 1700110K17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-115715591-3	chr3	115715595	115715795	+	714.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007901)	promoter-TSS (NM_007901)	-640.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	1.53477619371116	1.62171089092276	0.908111966371941	1.25363915296853	1.80252195391888	0.926296314227559	1.69075109333649	1.25962138913404	0.404321828728122	0.753480112059616	0.998431161219273
Merged-chr2-27023590-2	chr2	27023490	27023690	+	653.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_172659, exon 7 of 10)	exon (NM_172659, exon 7 of 10)	4408.0	NM_172659	227659.0	Mm.41203	NM_172659	ENSMUSG00000036067	Slc2a6	A330096C23|F630103L12Rik|Glut6|Glut9	solute carrier family 2 (facilitated glucose transporter), member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-113510167-2	chr13	113510067	113510267	+	909.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7323.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-91029195-3	chr10	91029136	91029336	+	854.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042558, intron 17 of 26)	L1MB4|LINE|L1	53507.0	NM_001042558	11783.0	Mm.220289	NM_009684	ENSMUSG00000019979	Apaf1	6230400I06Rik|Apaf-1|Apaf1l|fog|mKIAA0413	apoptotic peptidase activating factor 1	protein-coding	1.19971563341597	1.53754592879209	0.862656277959511	1.43077418763043	1.36083643311135	2.55914463781543	0.867414278180458	1.58024203328719	1.46721938909649	0.239664657777146	0.736299905431086
Merged-chr10-37210466-4	chr10	37210340	37210540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-71514.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118647645-2	chr9	118647549	118647749	+	646.049988	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 4 of 27)	intron (NM_133721, intron 4 of 27)	40940.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	-2.18243820993087	-2.15538464093652	-2.16356586349869	-2.17028616330028	-2.18053909940952	-2.15361173587851	-2.16171381403791	-2.0403552525549	0.759018020146679	0.829933115115583	1
Merged-chr5-120538042-2	chr5	120537942	120538142	+	695.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145853, intron 25 of 27)	intron (NM_145853, intron 25 of 27)	26850.0	NM_001177594	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-57842009-3	chr10	57841902	57842102	+	806.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47458.0	NM_020561	57319.0	Mm.2379	NM_020561	ENSMUSG00000019872	Smpdl3a	0610010C24Rik|AI529588|ASM3A|ASML3|ASML3A	sphingomyelin phosphodiesterase, acid-like 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-73254049-1	chr5	73253949	73254149	+	800.0	f1_balb.idr	intron (NM_028194, intron 1 of 62)	intron (NM_028194, intron 1 of 62)	2569.0	NM_028194	72313.0	Mm.260594	NM_028194	ENSMUSG00000070733	Fryl	2010313D22Rik|2310004H21Rik|2510002A14Rik|9030227G01Rik|mKIAA0826	FRY like transcription coactivator	protein-coding	-0.512087259394331	-0.73549788037413	-0.737885491530974	-0.739709584734473	-0.616224373224235	-0.418681162405448	-0.737361148137381	-0.59461745748828	1.20145054907507	0.650015480352166	1
Merged-chr16-34738878-1	chr16	34738778	34738978	+	780.0	f0_balb.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-46072.0	NM_139300	107589.0	Mm.33360	NM_139300	ENSMUSG00000022836	Mylk	9530072E15Rik|A930019C19Rik|AW489456|KRP|MLCK108|MLCK210|Mlck|nmMlck|smMLCK	myosin, light polypeptide kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-5059981-3	chr11	5059880	5060080	+	625.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001190408)	TTS (NM_001190408)	1852.0	NM_145216	75668.0	Mm.374836	NM_145216	ENSMUSG00000034209	Rasl10a	2210403B10Rik|AI852688	RAS-like, family 10, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-127786052-4	chr1	127785954	127786154	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028399, intron 2 of 8)	intron (NM_028399, intron 2 of 8)	11890.0	NM_028399	72949.0	Mm.268672	NM_028399	ENSMUSG00000026349	Ccnt2	2900041I18Rik|C81304|CycT2|CycT2a|CycT2b	cyclin T2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-144881499-2	chr5	144881399	144881599	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038627, intron 16 of 17)	intron (NM_001038627, intron 16 of 17)	15317.0	NR_106006	102465629.0		NR_106006	ENSMUSG00000098822	Mir7039	Gm27824|mmu-mir-7039	microRNA 7039	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-120172046-2	chr6	120171946	120172146	+	701.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016718, intron 1 of 3)	intron (NM_016718, intron 1 of 3)	-21777.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-27538461-2	chr7	27538361	27538561	+	620.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001317355, intron 9 of 13)	intron (NM_001317355, intron 9 of 13)	14757.0	NM_011116	18807.0	Mm.6483	NM_011116	ENSMUSG00000003363	Pld3	Sam-9	phospholipase D family, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-54943618-2	chr6	54943518	54943718	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_172729, exon 4 of 12)	exon (NM_172729, exon 4 of 12)	28043.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-106901170-1	chr9	106901070	106901270	+	561.0	f1_balb.idr	intron (NM_153413, intron 50 of 52)	intron (NM_153413, intron 50 of 52)	-9232.0	NM_029103	74840.0	Mm.29778	NM_029103	ENSMUSG00000032575	Manf	3230402M22Rik|AA407711|AA408789|AA673178|Armet|D17914|D18Mgi17	mesencephalic astrocyte-derived neurotrophic factor	protein-coding	1.14498620638708	1.0022345004629	0.965234911806728	1.64658348576547	0.889673726519447	2.8698968054969	2.97252605632305	2.74134854975745	3.51344692317061	0.00363263943124404	0.0520929178040629
Merged-chr8-13157343-4	chr8	13157242	13157442	+	878.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-1819.0	NM_001317353	16783.0	Mm.16716	NM_010684	ENSMUSG00000031447	Lamp1	CD107a|LGP-120|LGP-A|Lamp-1|P2B|Perk	lysosomal-associated membrane protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-98261849-2	chr13	98261749	98261949	+	702.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178918, intron 1 of 12)	intron (NM_178918, intron 1 of 12)	1143.0	NM_178918	105372.0	Mm.28221	NM_178918	ENSMUSG00000041747	Utp15	AW544865	UTP15 small subunit processome component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-130274529-2	chr5	130274429	130274629	+	695.833313	f1_balb.idr|f1_c57bl6.idr	intron (NR_153350, intron 6 of 15)	ID4_|SINE|ID	17492.0	NM_001015876	100929.0	Mm.271296	NM_178897	ENSMUSG00000056310	Tyw1	AW125391|Rsafd1	tRNA-yW synthesizing protein 1 homolog (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-67236779-2	chr5	67236679	67236879	+	657.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	T-rich|Low_complexity|Low_complexity	-23786.0	NM_001285452	67878.0	Mm.23217	NM_028975	ENSMUSG00000037720	Tmem33	1110006G02Rik|1600019D15Rik|2410089A21Rik|2700052H22Rik|5430406L04Rik|AA388285|AI314185|AI426615|db83	transmembrane protein 33	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-55078021-1	chr11	55077921	55078121	+	758.0	f0_balb.idr	exon (NM_177471, exon 1 of 7)	exon (NM_177471, exon 1 of 7)	110.0	NM_177471	52570.0	Mm.22361	NM_177471	ENSMUSG00000049588	Ccdc69	2210021E03Rik|D11Ertd461e	coiled-coil domain containing 69	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-71346871-4	chr10	71346767	71346967	+	859.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347191)	promoter-TSS (NM_001347191)	-896.0	NM_001347191	69718.0	Mm.245867	NM_027184	ENSMUSG00000060733	Ipmk	2410017C19Rik|AA408208|Impk	inositol polyphosphate multikinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-111165162-4	chr11	111165103	111165303	+	940.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	99039.0	NM_008425	16518.0	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80248240-2	chr10	80248140	80248340	+	802.125	f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 1 of 4)	ID_B1|SINE|B4	-1212.0	NM_029272	75406.0	Mm.28712	NM_029272	ENSMUSG00000020153	Ndufs7	1010001M04Rik	NADH dehydrogenase (ubiquinone) Fe-S protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-37348541-4	chr3	37348468	37348668	+	758.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008006)	promoter-TSS (NM_008006)	-85.0	NM_008006	14173.0	Mm.473689	NM_008006	ENSMUSG00000037225	Fgf2	Fgf-2|Fgfb|bFGF	fibroblast growth factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-16165959-2	chr4	16165859	16166059	+	576.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045765, intron 1 of 6)	intron (NR_045765, intron 1 of 6)	1849.0	NR_045765	100415915.0	Mm.387180	NR_045765	ENSMUSG00000085112	A530072M11Rik	-	RIKEN cDNA gene A530072M11	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-23524818-4	chr13	23524708	23524908	+	866.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6236.0	NM_153173	69386.0	Mm.158272	NM_153173	ENSMUSG00000060981	Hist1h4h	1700024H08Rik	histone cluster 1, H4h	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31439638-2	chr14	31439538	31439738	+	592.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3538.0	NM_011894	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-52313284-2	chr14	52313184	52313384	+	547.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_015772, exon 2 of 2)	exon (NM_015772, exon 2 of 2)	3039.0	NM_001244916	50524.0	Mm.39487	NM_015772	ENSMUSG00000049532	Sall2	AI225809|AW559097|Msal-2|Sal-2|mKIAA0360|p150(Sal2)	spalt like transcription factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-88911070-3	chr18	88910966	88911166	+	791.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16859.0	NM_018821	54607.0	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111441813-4	chr12	111441697	111441897	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009396)	promoter-TSS (NM_009396)	-864.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140138223-3	chr5	140138120	140138320	+	889.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359027, intron 1 of 6)	intron (NM_001359027, intron 1 of 6)	36698.0	NM_001359027	17120.0	Mm.27250	NM_010752	ENSMUSG00000029554	Mad1l1	AI173502|AW550425|Mad1	MAD1 mitotic arrest deficient 1-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78984599-2	chr15	78984499	78984699	+	766.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001024716, intron 1 of 13)	intron (NM_001024716, intron 1 of 13)	1543.0	NM_001024716	110253.0	Mm.123714	NM_138579	ENSMUSG00000033088	Triobp	AI428493|EST478828|Tara|mKIAA1662	TRIO and F-actin binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75549541-2	chr11	75549441	75549641	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199284, intron 5 of 13)	intron (NM_001199284, intron 5 of 13)	-1888.0	NR_039553	100628624.0		NR_039553	ENSMUSG00000093100	Mir3971	mmu-mir-3971|mu-mir-3971	microRNA 3971	ncRNA	1.3667767867435	0.716216434460587	0.701479386474657	0.689877596534939	1.78839779394725	1.59292376116607	1.52664460314674	0.69191961978139	2.2174219325302	0.153193814950683	0.607810645429328
Merged-chr19-6306558-8	chr19	6306427	6306627	+	986.591675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033342)	promoter-TSS (NM_001033342)	70.0	NM_001033342	240505.0	Mm.329622	NM_001033342	ENSMUSG00000024769	Cdc42bpg	BC046418|MRCKgamma	CDC42 binding protein kinase gamma (DMPK-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-5125518-4	chr18	5125425	5125625	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40206.0	NR_153824	102637682.0	Mm.451914	NR_153824		Gm26682	Gm38715	predicted gene, 26682	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-30760745-2	chr14	30760645	30760845	+	681.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166531, intron 2 of 21)	intron (NM_001166531, intron 2 of 21)	45130.0	NM_001166532	54650.0	Mm.294662	NM_019460	ENSMUSG00000006527	Sfmbt1	4930442N21Rik|9330180L21Rik|AA536974|Sfmbt|Smr	Scm-like with four mbt domains 1	protein-coding	1.16907644109545	1.32071551424793	1.39337743395831	0.772729846174183	1.17895199434355	1.3314513810403	1.40575514474632	0.774286870636115	0.0404453154918761	0.976614212605563	0.998431161219273
Merged-chr10-125325301-4	chr10	125325210	125325410	+	865.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358496, intron 1 of 5)	ORR1F|LTR|ERVL-MaLR	3653.0	NM_011391	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-77672979-1	chr4	77672879	77673079	+	577.0	f1_c57bl6.idr	intron (NM_011211, intron 2 of 39)	intron (NM_011211, intron 2 of 39)	538916.0	NM_011211	19266.0	Mm.184021	NM_011211	ENSMUSG00000028399	Ptprd	1110002J03Rik|3000002J10Rik|B230219D21Rik|R-PTP-delta	protein tyrosine phosphatase, receptor type, D	protein-coding	-1.18378942727406	-1.15669478905697	-0.457913181653105	-1.17806440097404	-1.18323730008524	-1.15415234459186	-1.16577117532349	-1.17633933179771	-2.81844548480871	0.412768592413622	1
Merged-chr7-66102103-2	chr7	66102003	66102203	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7412.0	NM_001081163	269941.0	Mm.333916	NM_001081163	ENSMUSG00000032640	Chsy1	mKIAA0990	chondroitin sulfate synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-94054128-1	chr6	94054028	94054228	+	553.0	f0_balb.idr	intron (NM_001029850, intron 1 of 23)	intron (NM_001029850, intron 1 of 23)	-140438.0	NM_001083320	14924.0	Mm.217216	NM_010367	ENSMUSG00000045095	Magi1	AIP3|BAP1|Baiap1|Gukmi1|MAGI1c|Magi-1|TNRC19|WWP3|mKIAA4129	membrane associated guanylate kinase, WW and PDZ domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-91187038-1	chr1	91186938	91187138	+	680.0	f1_balb.idr	intron (NM_001168392, intron 1 of 3)	ORR1F|LTR|ERVL-MaLR	7216.0	NM_001168392	51801.0	Mm.3272	NM_016894	ENSMUSG00000034353	Ramp1	9130218E19Rik	receptor (calcitonin) activity modifying protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-164948672-2	chr2	164948572	164948772	+	751.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_013599, intron 1 of 12)	intron (NM_013599, intron 1 of 12)	453.0	NM_013599	17395.0	Mm.4406	NM_013599	ENSMUSG00000017737	Mmp9	AW743869|B/MMP9|Clg4b|Gel B|MMP-9|pro-MMP-9	matrix metallopeptidase 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-49057668-2	chr9	49057568	49057768	+	917.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_012039, exon 2 of 16)	exon (NM_012039, exon 2 of 16)	2087.0	NM_012039	26951.0	Mm.24791	NM_012039	ENSMUSG00000032264	Zw10	6330566F14Rik|MmZw10	zw10 kinetochore protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-89314676-2	chr15	89314576	89314776	+	725.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081030, intron 1 of 39)	CpG	635.0	NM_001081030	77980.0	Mm.35483	NM_030019	ENSMUSG00000036529	Sbf1	2610510A08Rik|B230113C15Rik|Mtmr5|mKIAA3020	SET binding factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129701674-4	chr4	129701573	129701773	+	981.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4828.0	NM_001356378	230770.0	Mm.257157	NM_199305	ENSMUSG00000053730	Tmem39b	6330509E05Rik|BC037095	transmembrane protein 39b	protein-coding	4.27361441920597	4.33028333596534	4.91325033767602	4.60964669348002	4.07037299344842	3.28227202626837	3.70854636756101	4.63080505432267	-0.689244531960027	0.121890028014884	0.547245267450283
Merged-chr3-121494225-4	chr3	121494126	121494326	+	953.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145394, intron 10 of 14)	intron (NM_145394, intron 10 of 14)	38118.0	NM_145394	213603.0	Mm.33062	NM_145394	ENSMUSG00000039865	Slc44a3	BC010552	solute carrier family 44, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-120698755-1	chr10	120698655	120698855	+	575.0	f0_balb.idr	Intergenic	Intergenic	-66977.0	NR_038000	70874.0	Mm.427286	NR_038000	ENSMUSG00000044544	4921513I03Rik	-	RIKEN cDNA 4921513I03 gene	ncRNA	-1.5061220274826	-1.47360709383584	-1.48343987814663	-1.49151681994238	-1.50383953926072	-1.47147628845725	-1.0170701920923	-1.49007105122263	2.15652851593596	0.535359572134045	1
Merged-chr5-137817657-4	chr5	137817550	137817750	+	996.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360023, intron 13 of 16)	intron (NM_001360023, intron 13 of 16)	18628.0	NM_153510	231805.0	Mm.379385	NM_153510	ENSMUSG00000046245	Pilra	AV021745|FDF03	paired immunoglobin-like type 2 receptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-63447168-2	chr14	63447068	63447268	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177628, intron 2 of 3)	intron (NM_177628, intron 2 of 3)	10774.0	NM_177628	219148.0	Mm.37882	NM_177628	ENSMUSG00000035095	Fam167a	A030013D21	family with sequence similarity 167, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-30507736-2	chr18	30507636	30507836	+	979.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	234871.0	NR_151699	225326.0	Mm.194127	NM_181414	ENSMUSG00000033628	Pik3c3	5330434F23Rik|Vps34	phosphatidylinositol 3-kinase catalytic subunit type 3	protein-coding	-1.50561175621786	-1.47331375025452	-1.02203377115094	-1.49110398925286	-1.50334449591826	-1.47119716082604	-1.48086985756939	-1.48966786617048	-2.07776723614574	0.550394407909386	1
Merged-chr19-4102934-2	chr19	4102834	4103034	+	610.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008851, intron 2 of 22)	intron (NM_008851, intron 2 of 22)	2312.0	NM_008851	18739.0	Mm.1860	NM_008851	ENSMUSG00000024851	Pitpnm1	DRES9|Mpt-1|Nir-2|PITPnm 1|Pitpnm|R75447|Rd9|RdgB|RdgB1	phosphatidylinositol transfer protein, membrane-associated 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-53842134-2	chr19	53842034	53842234	+	915.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001170847, intron 8 of 13)	intron (NM_001170847, intron 8 of 13)	-50097.0	NM_011050	18569.0	Mm.1605	NM_011050	ENSMUSG00000024975	Pdcd4	D19Ucla1|Ma3|Tis	programmed cell death 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-77531119-4	chr10	77531021	77531221	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008404, intron 1 of 15)	intron (NM_008404, intron 1 of 15)	773.0	NM_008404	16414.0	Mm.1137	NM_008404	ENSMUSG00000000290	Itgb2	2E6|AI528527|Cd18|LAD|LCAMB|Lfa1|MF17	integrin beta 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-54113057-4	chr11	54112957	54113157	+	995.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001136076, intron 5 of 15)	intron (NM_001136076, intron 5 of 15)	12133.0	NM_011031	18452.0	Mm.3705	NM_011031	ENSMUSG00000018906	P4ha2	AA407196|C76437|P4hl	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-36768248-1	chr9	36768148	36768348	+	825.0	f0_c57.idr	promoter-TSS (NM_008408)	promoter-TSS (NM_008408)	-670.0	NM_008408	16430.0	Mm.2863	NM_008408	ENSMUSG00000032116	Stt3a	AA408947|BB081708|Itm1	STT3, subunit of the oligosaccharyltransferase complex, homolog A (S. cerevisiae)	protein-coding	3.16158433031404	2.93074191846396	2.72145660631263	2.75595585202999	2.2870325828383	2.95184820953576	2.74241023735494	3.27259930665491	-0.0838683289966074	0.901971262482332	0.998431161219273
Merged-chr11-70617289-2	chr11	70617189	70617389	+	998.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001145537)	TTS (NM_001145537)	1395.0	NM_001145537	668433.0	Mm.425687	NM_001145537	ENSMUSG00000087279	4930544D05Rik	-	RIKEN cDNA 4930544D05 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-75194219-2	chr1	75194119	75194319	+	759.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_026187, exon 2 of 13)	exon (NM_026187, exon 2 of 13)	2059.0	NR_051998	52231.0	Mm.259326	NM_026187	ENSMUSG00000026199	Ankzf1	1300008P06Rik|2810025E10Rik|D1Ertd161e	ankyrin repeat and zinc finger domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-148914078-4	chr6	148913947	148914147	+	986.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17810.0	NM_181541	232560.0	Mm.150568	NM_181541	ENSMUSG00000030309	Caprin2	C1qdc1|Eeg1|rng140	caprin family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-87042232-3	chr1	87042093	87042293	+	723.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001172157, intron 15 of 21)	intron (NM_001172157, intron 15 of 21)	47735.0	NM_007433	11650.0	Mm.195224	NM_007433	ENSMUSG00000026246	Alppl2	Akp5|C77216|D1Ertd816e|EAP	alkaline phosphatase, placental-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81466220-4	chr15	81466126	81466326	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019712)	promoter-TSS (NM_019712)	-90.0	NM_019712	56438.0	Mm.29405	NM_019712	ENSMUSG00000022400	Rbx1	1500002P15Rik|AA517855|ROC1	ring-box 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-34672757-2	chr7	34672657	34672857	+	579.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17248.0	NM_001360818	233107.0	Mm.76761	NM_146188	ENSMUSG00000030499	Kctd15	BC031749	potassium channel tetramerisation domain containing 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80510500-4	chr10	80510378	80510578	+	973.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139226, intron 1 of 1)	intron (NM_139226, intron 1 of 1)	15572.0	NM_139226	246086.0	Mm.250572	NM_139226	ENSMUSG00000045518	Onecut3	OC-3|Oc3	one cut domain, family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19303947-4	chr7	19303830	19304030	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008036, exon 4 of 4)	3' UTR (NM_008036, exon 4 of 4)	6115.0	NM_008036	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-38679065-4	chr16	38678973	38679173	+	953.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020260, intron 1 of 11)	RCHARR1|DNA|hAT-Charlie	33962.0	NM_020260	12549.0	Mm.370848	NM_020260	ENSMUSG00000022799	Arhgap31	5830477L08Rik|AU041750|Cdgap|D330026I07Rik	Rho GTPase activating protein 31	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-36867159-2	chr17	36867101	36867301	+	646.375	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024134)	promoter-TSS (NM_001024134)	9.0	NM_001177872	69097.0	Mm.307027	NM_001024134	ENSMUSG00000050747	Trim15	1810012B10Rik	tripartite motif-containing 15	protein-coding	-0.953721354153451	-1.41025554057125	-1.42001056191158	-1.42802362688808	-1.44024889148474	-1.40814158675276	-1.41780223890411	-1.42658929208844	-2.11310844444413	0.543369238581748	1
Merged-chr1-127836811-4	chr1	127836699	127836899	+	971.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011737, intron 2 of 9)	MLT1A0|LTR|ERVL-MaLR	3491.0	NM_011737	22625.0	Mm.246566	NM_011737	ENSMUSG00000051590	Map3k19	Ysk4	mitogen-activated protein kinase kinase kinase 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-74395553-4	chr17	74395437	74395637	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144798)	promoter-TSS (NM_144798)	-71.0	NM_001252478	210148.0	Mm.243943	NM_144798	ENSMUSG00000024069	Slc30a6	9530029F08Rik|ZnT6	solute carrier family 30 (zinc transporter), member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-72262660-2	chr5	72262560	72262760	+	653.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_003966, intron 11 of 22)	intron (NR_003966, intron 11 of 22)	59317.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-18047496-3	chr2	18047379	18047579	+	858.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_028317, exon 1 of 1)	exon (NM_028317, exon 1 of 1)	970.0	NM_028317	72668.0	Mm.102183	NM_028317	ENSMUSG00000054074	Skida1	2810030E01Rik|5730507N06Rik|BB088113|DLN-1	SKI/DACH domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-79331157-1	chr11	79331057	79331257	+	621.0	f1_c57bl6.idr	Intergenic	Intergenic	-8735.0	NM_010897	18015.0	Mm.255596	NM_010897	ENSMUSG00000020716	Nf1	AW494271|Dsk9|E030030H24Rik|Mhdadsk9|Nf-1	neurofibromin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-156106054-2	chr4	156105954	156106154	+	597.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3944.0	NM_145557	230996.0	Mm.318925	NM_145557	ENSMUSG00000059939	9430015G10Rik	-	RIKEN cDNA 9430015G10 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-37615274-4	chr6	37615195	37615395	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	85122.0	NM_145364	208665.0	Mm.262635	NM_145364	ENSMUSG00000038641	Akr1d1	-	aldo-keto reductase family 1, member D1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90465438-2	chr2	90465338	90465538	+	858.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 5 of 23)	intron (NM_008982, intron 5 of 23)	13736.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97400133-2	chr6	97400033	97400233	+	964.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 5 of 23)	intron (NM_145148, intron 5 of 23)	59153.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-41918582-2	chr13	41918482	41918682	+	720.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52667.0	NR_033545	100038577.0	Mm.387093	NR_033545	ENSMUSG00000113856	Gm10790	-	predicted gene 10790	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191180084-3	chr1	191179909	191180109	+	922.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007498, intron 1 of 3)	intron (NM_007498, intron 1 of 3)	3324.0	NM_007498	11910.0	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-37255621-4	chr12	37255528	37255728	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178767, intron 3 of 12)	intron (NM_178767, intron 3 of 12)	13989.0	NM_178767	319660.0	Mm.485540	NM_178767	ENSMUSG00000050103	Agmo	A530016O06Rik|AI790538|Tmem195	alkylglycerol monooxygenase	protein-coding	-0.0985742157436188	-0.0753264072888102	0.88771344875468	-0.0887002154626479	-0.0970939548375921	-0.0736469802800072	0.809752541314791	-0.0876714137318263	-0.182705803784161	0.937914573591807	1
Merged-chr12-72336225-4	chr12	72336124	72336324	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153457, intron 1 of 8)	intron (NM_153457, intron 1 of 8)	72830.0	NM_001286448	104001.0	Mm.221275	NM_153457	ENSMUSG00000021087	Rtn1	Nsp	reticulon 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102695543-4	chr12	102695391	102695591	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172584, intron 1 of 9)	intron (NM_172584, intron 1 of 9)	9378.0	NM_172584	217837.0	Mm.482192	NM_172584	ENSMUSG00000057963	Itpk1	BC031182	inositol 1,3,4-triphosphate 5/6 kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-36534342-4	chr13	36534254	36534454	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039189, intron 5 of 5)	intron (NM_001039189, intron 5 of 5)	200123.0	NM_153529	68404.0	Mm.232930	NM_153529	ENSMUSG00000039114	Nrn1	0710008J23Rik|Cpg15|Nrn	neuritin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91685729-4	chr16	91685618	91685818	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021720, intron 3 of 9)	intron (NM_021720, intron 3 of 9)	3010.0	NM_021720	60364.0	Mm.328698	NM_021720	ENSMUSG00000022960	Donson	1110025J21Rik|AI845729|ORF60	downstream neighbor of SON	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-34785955-2	chr2	34785855	34786055	+	742.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_145522, intron 4 of 7)	(CACAG)n|Simple_repeat|Simple_repeat	13865.0	NM_022310	14828.0	Mm.330160	NM_022310	ENSMUSG00000026864	Hspa5	AL022860|AU019543|Bip|D2Wsu141e|D2Wsu17e|Grp78|Hsce70|SEZ-7|Sez7|baffled|mBiP	heat shock protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-22325834-4	chr6	22325707	22325907	+	844.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138587, intron 5 of 9)	intron (NM_138587, intron 5 of 9)	30274.0	NM_138587	27999.0	Mm.490307	NM_138587	ENSMUSG00000029672	Fam3c	D6Wsu176e|Ilei	family with sequence similarity 3, member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81810975-4	chr15	81810888	81811088	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017376)	promoter-TSS (NM_017376)	-426.0	NM_017376	21685.0	Mm.270278	NM_017376	ENSMUSG00000022389	Tef	2310028D20Rik	thyrotroph embryonic factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-78869799-3	chr2	78869691	78869891	+	973.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_151458, exon 1 of 7)	non-coding (NR_151458, exon 1 of 7)	113.0	NR_151457	22193.0	Mm.1485	NM_009454	ENSMUSG00000027011	Ube2e3	Ubce4|ubcM2	ubiquitin-conjugating enzyme E2E 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80431975-2	chr10	80431875	80432075	+	747.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164153, intron 1 of 18)	intron (NM_001164153, intron 1 of 18)	1678.0	NM_001164150	21423.0	Mm.3406	NM_011548	ENSMUSG00000020167	Tcf3	A1|AA408400|ALF2|AW209082|E12|E12/E47|E2A|E47|KA1|ME2|Pan1|Pan2|TCF-3|Tcfe2a|VDIR|bHLHb21	transcription factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117800006-2	chr11	117799906	117800106	+	897.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029964, intron 2 of 5)	B2_Mm2|SINE|B2	2346.0	NM_029964	77727.0	Mm.159981	NM_029964	ENSMUSG00000025573	6030468B19Rik	Il-40	RIKEN cDNA 6030468B19 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-27160034-4	chr7	27159916	27160116	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357767, intron 2 of 4)	intron (NM_001357767, intron 2 of 4)	5712.0	NM_001357767	112406.0	Mm.29978	NM_053208	ENSMUSG00000058709	Egln2	0610011A13Rik|C85656|Hif-p4h-1|Ier4|Phd1|SM-20	egl-9 family hypoxia-inducible factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-56704171-3	chr13	56704084	56704284	+	806.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164042, intron 1 of 6)	intron (NM_001164042, intron 1 of 6)	516.0	NM_001164042	17129.0	Mm.272920	NM_008541	ENSMUSG00000021540	Smad5	1110051M15Rik|AI451355|Dwf-C|Madh5|MusMLP	SMAD family member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98891616-2	chr11	98891516	98891716	+	547.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_197940, intron 4 of 7)	intron (NM_197940, intron 4 of 7)	-16273.0	NM_001025779	23834.0	Mm.20912	NM_011799	ENSMUSG00000017499	Cdc6	CDC18L	cell division cycle 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-74077546-3	chr1	74077456	74077656	+	729.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289895, intron 2 of 32)	intron (NM_001289895, intron 2 of 32)	46891.0	NM_027884	21961.0	Mm.309975	NM_027884	ENSMUSG00000055322	Tns1	1110018I21Rik|1200014E20Rik|AI648117|E030018G17Rik|E030037J05Rik|Tns	tensin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-160208477-4	chr2	160208383	160208583	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	119011.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-151294180-3	chr3	151294077	151294277	+	830.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-143705.0	NM_133222	170757.0	Mm.317261	NM_133222	ENSMUSG00000039167	Adgrl4	1110033N21Rik|ETL1|Eltd1|Etl	adhesion G protein-coupled receptor L4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-95533087-4	chr10	95532974	95533174	+	681.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080560, intron 1 of 3)	RLTR17|LTR|ERVK	17912.0	NM_080560	93765.0	Mm.371667	NM_080560	ENSMUSG00000074781	Ube2n	1500026J17Rik|AL022654|BB101821|UBC13	ubiquitin-conjugating enzyme E2N	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-181187239-4	chr2	181187129	181187329	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356427)	promoter-TSS (NM_001356427)	-18.0	NM_025598	66496.0	Mm.213943	NM_025598	ENSMUSG00000016344	Ppdpf	0610012G23Rik|2610317A05Rik|2700038C09Rik|3110053G12Rik	pancreatic progenitor cell differentiation and proliferation factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-79358530-2	chr15	79358430	79358630	+	827.400024	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001304830, exon 3 of 3)	3' UTR (NM_001304830, exon 3 of 3)	10128.0	NM_001304832	17133.0	Mm.86646	NM_010755	ENSMUSG00000042622	Maff	-	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein F (avian)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-94546136-2	chr11	94546036	94546236	+	876.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013381, intron 3 of 8)	B1F2|SINE|Alu	3071.0	NM_001013381	237926.0	Mm.342275	NM_001013381	ENSMUSG00000039096	Rsad1	B430319G23|BC056485	radical S-adenosyl methionine domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-62076819-2	chr1	62076719	62076919	+	831.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081050, intron 4 of 22)	intron (NM_001081050, intron 4 of 22)	59290.0	NR_151537	105243940.0		NR_151537		Pard3bos2	Gm12747	par-3 family cell polarity regulator beta, opposite strand 2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-104218844-4	chr7	104218719	104218919	+	690.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001013616)	promoter-TSS (NM_001013616)	24.0	NM_001013616	94088.0	Mm.274843	NM_001013616	ENSMUSG00000072244	Trim6	C430046K18Rik|D7Ertd684e	tripartite motif-containing 6	protein-coding	0.167608168154403	0.199154473602089	0.189025495901138	1.30174333829939	0.169634452273335	0.201411899948142	0.416478139859479	1.23469574101582	0.0450555764720747	0.982046124832335	1
Merged-chr17-10377285-2	chr17	10377185	10377385	+	939.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR11B|LTR|ERVK	52683.0	NR_045461	76634.0	Mm.491052	NR_045461	ENSMUSG00000099384	1700110C19Rik	-	RIKEN cDNA 1700110C19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-4414578-2	chr10	4414443	4414643	+	846.333374	f0_c57.idr|f1_c57bl6.idr	non-coding (NR_002891, exon 6 of 12)	non-coding (NR_002891, exon 6 of 12)	14623.0	NR_002891	433224.0	Mm.153111	NR_002891	ENSMUSG00000112693	Gm5512	EG433224	required for meiotic nuclear division 1 pseudogene	pseudo	1.78332391062771	0.987468644230938	2.96644533123751	1.19927441680598	2.024992973151	0.994450737415554	2.67262032411032	0.934210767848972	-0.28153910852557	0.823340578212807	0.998431161219273
Merged-chr1-64925892-4	chr1	64925811	64926011	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039493, intron 2 of 7)	intron (NM_001039493, intron 2 of 7)	30913.0	NM_001039493	241075.0	Mm.239534	NM_175509	ENSMUSG00000051344	Plekhm3	9430067K14Rik|A230102O09Rik|AI449570|DAPR|Plekhm1l	pleckstrin homology domain containing, family M, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-116003692-4	chr6	116003589	116003789	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8684.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-82652978-4	chr6	82652879	82653079	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025882)	promoter-TSS (NM_025882)	-114.0	NM_025882	66979.0	Mm.195753	NM_025882	ENSMUSG00000030042	Pole4	2400007P05Rik|5830430F06Rik	polymerase (DNA-directed), epsilon 4 (p12 subunit)	protein-coding	6.2536420149343	5.74796971656138	6.12984955563779	6.02957202353614	6.63339038915483	5.96779811733091	5.37596383916489	6.14265912798888	0.0588264153048689	0.828527948360886	0.998431161219273
Merged-chr18-82876403-4	chr18	82876288	82876488	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20491.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45417229-2	chr7	45417129	45417329	+	713.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_198190)	TTS (NM_198190)	3534.0	NM_198190	78405.0	Mm.20344	NM_198190	ENSMUSG00000074121	Ntf5	2900040K06Rik|AI462899|NT-4|NT-5|NT4|NT4/5|Ntf-5|Ntf4	neurotrophin 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-27176201-2	chr9	27176101	27176301	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20780.0	NM_023277	83964.0	Mm.28770	NM_023277	ENSMUSG00000031990	Jam3	1110002N23Rik|JAM-3|JAM-C|Jcam3	junction adhesion molecule 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-82860760-4	chr10	82860632	82860832	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042513, intron 2 of 14)	intron (NM_001042513, intron 2 of 14)	391.0	NM_001042514	50493.0	Mm.210155	NM_015762	ENSMUSG00000020250	Txnrd1	TR|TR1|TrxR1	thioredoxin reductase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-20210637-2	chr11	20210537	20210737	+	572.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008996, intron 1 of 5)	B2_Mm1a|SINE|B2	9225.0	NM_008996	19324.0	Mm.271944	NM_008996	ENSMUSG00000020149	Rab1a	Gtbp|Rab-1|Rab1|Ypt1|mKIAA3012	RAB1A, member RAS oncogene family	protein-coding	-1.23826193677681	-1.21241040182355	-1.22270105026776	-0.934241458926562	-1.23783648736863	-1.21018037537722	-1.22037147302458	-0.929982742503718	0.0323590357436516	0.9924297640193	1
Merged-chr11-110987274-4	chr11	110987178	110987378	+	716.55835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252207, intron 2 of 2)	intron (NM_001252207, intron 2 of 2)	-10209.0	NM_001252209	16517.0	Mm.30176	NM_010604	ENSMUSG00000051497	Kcnj16	6430410F18Rik|AI132396|Kir5.1	potassium inwardly-rectifying channel, subfamily J, member 16	protein-coding	2.02804850486789	2.20559437818811	1.4670998711335	1.00806647112772	1.64545506184901	2.4111966975927	1.03181539173682	1.43332194309863	-0.0633825302334868	0.957548373756382	0.998431161219273
Merged-chr4-32570786-4	chr4	32570671	32570871	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_026843, intron 1 of 4)	intron (NR_026843, intron 1 of 4)	891.0	NR_026843	414068.0	Mm.389550	NR_026843	ENSMUSG00000086150	Bach2os	-	BTB and CNC homology 2, opposite strand	ncRNA	3.27288176280305	4.30371875069201	3.14975615987979	4.50278450586803	3.30139458952484	3.29196245872873	4.20002073466213	3.96833124599465	-0.266559360956022	0.627426189846023	0.980912176761026
Merged-chr2-30808684-2	chr2	30808577	30808777	+	597.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356433, intron 1 of 3)	intron (NM_001356433, intron 1 of 3)	494.0	NM_001356437	66617.0	Mm.33167	NM_170592	ENSMUSG00000026857	Ntmt1	2610205E22Rik|AL033331|AL033332|Mettl11a|NTM1A	N-terminal Xaa-Pro-Lys N-methyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16983047-2	chr7	16982947	16983147	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11541.0	NM_001101535	434130.0	Mm.459162	NM_001101535	ENSMUSG00000041117	Ccdc8	-	coiled-coil domain containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-122596756-4	chr6	122596687	122596887	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001134391, intron 2 of 7)	intron (NM_001134391, intron 2 of 7)	5657.0	NM_031159	11810.0	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	3.02131973824281	2.30706313567166	3.56106819803536	1.72274456852817	3.42875252078881	3.15332777951377	3.7068420174119	1.45056068692095	0.546333911502096	0.518053221732285	0.947641799425091
Merged-chr17-35047278-4	chr17	35047185	35047385	+	953.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146215)	promoter-TSS (NM_001146215)	-540.0	NM_001146215	17687.0	Mm.24192	NM_013600	ENSMUSG00000007035	Msh5	Mut5	mutS homolog 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101428524-2	chr7	101428424	101428624	+	580.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001008548, intron 1 of 30)	intron (NM_001008548, intron 1 of 30)	6833.0	NR_152192	207728.0	Mm.247564	NM_001008548	ENSMUSG00000030653	Pde2a	CGS-PDE|cGSPDE	phosphodiesterase 2A, cGMP-stimulated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-61174584-4	chr11	61174453	61174653	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004143, intron 1 of 12)	CpG	506.0	NM_001004143	216825.0	Mm.30602	NM_001004143	ENSMUSG00000042506	Usp22	AI427806	ubiquitin specific peptidase 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-22034751-4	chr3	22034657	22034857	+	802.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41895.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-59474414-2	chr17	59474314	59474514	+	625.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3_Mus|LINE|L1	-461092.0	NM_026497	67993.0	Mm.36507	NM_026497	ENSMUSG00000024228	Nudt12	0610016O18Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127141818-2	chr10	127141718	127141918	+	663.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20658.0	NM_001171026	216440.0	Mm.295246	NM_177614	ENSMUSG00000040462	Os9	4632413K17Rik|AU022351	amplified in osteosarcoma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89103191-4	chr3	89103085	89103285	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1218.0	NM_001253751	110196.0	Mm.39472	NM_134469	ENSMUSG00000059743	Fdps	6030492I17Rik|AI256750|Fdpsl1|mKIAA1293	farnesyl diphosphate synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-12462797-8	chr19	12462722	12462922	+	987.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010821, exon 2 of 2)	exon (NM_010821, exon 2 of 2)	2043.0	NM_010821	17476.0	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	2.26900076998425	1.83165944272702	2.65633946291019	1.2765375118486	2.81168530334889	1.62073071489293	2.11978289305561	2.75207321808254	0.683051600063019	0.480147396638179	0.928595475837891
Merged-chr19-23153258-2	chr19	23153158	23153358	+	810.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010638, intron 1 of 1)	B2_Mm2|SINE|B2	3827.0	NR_035423	100316672.0		NR_035423	ENSMUSG00000080626	Mir1192	Mirn1192|mmu-mir-1192	microRNA 1192	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-43048608-5	chr5	43048478	43048678	+	926.7800289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-184885.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-54736288-4	chr6	54736178	54736378	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Zaphod|DNA|hAT-Tip100	54654.0	NM_001289740	68235.0	Mm.233860	NM_026629	ENSMUSG00000038065	Mturn	2410066E13Rik|AI448550|B230212L03Rik	maturin, neural progenitor differentiation regulator homolog (Xenopus)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-25584650-2	chr14	25584550	25584750	+	927.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 6 of 23)	intron (NM_183208, intron 6 of 23)	-2154.0	NR_033492	77592.0	Mm.444871	NM_175264		4931406H21Rik	-	RIKEN cDNA 4931406H21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-122845088-4	chr6	122844992	122845192	+	869.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_021899, exon 11 of 11)	3' UTR (NM_021899, exon 11 of 11)	11065.0	NM_009779	12267.0	Mm.2408	NM_009779	ENSMUSG00000040552	C3ar1	AZ3B|C3AR|HNFAG09	complement component 3a receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-127327972-2	chr4	127327872	127328072	+	594.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001160012, intron 1 of 1)	intron (NM_001160012, intron 1 of 1)	1153.0	NM_008126	14620.0	Mm.90003	NM_008126	ENSMUSG00000042367	Gjb3	Cnx31|Cx31|D4Wsu144e|Gjb-3	gap junction protein, beta 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75172747-12	chr11	75172687	75172887	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029794)	promoter-TSS (NR_029794)	-601.0	NR_029794	387208.0		NR_029794	ENSMUSG00000065590	Mir212	Mirn212|mir-212|mmu-mir-212	microRNA 212	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-172422235-2	chr2	172422135	172422335	+	555.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080820, intron 2 of 6)	intron (NM_001080820, intron 2 of 6)	-18343.0	NM_025542	66404.0	Mm.25157	NM_025542	ENSMUSG00000027502	Rtf2	1700067C04Rik|2410001C21Rik|5730427M17Rik|AA589417|Rtfdc1	replication termination factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76247396-4	chr15	76247275	76247475	+	833.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_105918)	promoter-TSS (NR_105918)	568.0	NM_023168	66168.0	Mm.41665	NM_023168	ENSMUSG00000022564	Grina	1110025J15Rik|Lag|Tmbim3	glutamate receptor, ionotropic, N-methyl D-aspartate-associated protein 1 (glutamate binding)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-119516986-2	chr2	119516886	119517086	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30641.0	NM_172857	241624.0	Mm.212773	NM_172857	ENSMUSG00000048647	Exd1	4932702D22Rik|Exdl1|mExd1	exonuclease 3'-5' domain containing 1	protein-coding	-1.17548259612893	-1.15151556669643	-0.993759823691155	-1.17101671941623	-0.697239103652171	-1.14919542171728	-1.15979835608045	-1.16944248224289	1.47493997988595	0.655975420262184	1
Merged-chr3-89421602-4	chr3	89421523	89421723	+	899.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113331)	promoter-TSS (NM_001113331)	2.0	NM_001113331	20416.0	Mm.86595	NM_011368	ENSMUSG00000042626	Shc1	Shc|ShcA|p66|p66shc	src homology 2 domain-containing transforming protein C1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44549725-2	chr7	44549625	44549825	+	689.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011131)	promoter-TSS (NM_011131)	-910.0	NM_011131	18971.0	Mm.16549	NM_011131	ENSMUSG00000038644	Pold1	125kDa	polymerase (DNA directed), delta 1, catalytic subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-150922355-4	chr2	150922249	150922449	+	986.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027014, intron 4 of 6)	Lx9|LINE|L1	12755.0	NM_001163476	69270.0	Mm.271603	NM_027014	ENSMUSG00000027454	Gins1	2810418N01Rik|Gins4|PSF1|mKIAA0186	GINS complex subunit 1 (Psf1 homolog)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-116861184-2	chr3	116861078	116861278	+	813.0	f0_c57.idr|f1_balb.idr	promoter-TSS (NM_009146)	promoter-TSS (NM_009146)	-502.0	NM_009146	20321.0	Mm.66293	NM_009146	ENSMUSG00000033386	Frrs1	AI131732|Sdfr2	ferric-chelate reductase 1	protein-coding	1.59341498113376	1.4055529214877	2.21139599193975	2.39619566901333	1.85031270442278	1.41443443106331	1.13221189253595	2.33170809782793	-0.523808209579916	0.632599246836889	0.982230082053879
Merged-chr10-81420331-2	chr10	81420231	81420431	+	685.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_008688, exon 2 of 10)	exon (NM_008688, exon 2 of 10)	-4034.0	NR_106141	102465778.0		NR_106141	ENSMUSG00000105379	Mir1191b	mmu-mir-1191b	microRNA 1191b	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-46651790-2	chr17	46651690	46651890	+	837.666626	f1_balb.idr|f1_c57bl6.idr	exon (NM_025611, exon 2 of 26)	exon (NM_025611, exon 2 of 26)	1452.0	NM_025611	66515.0	Mm.329078	NM_025611	ENSMUSG00000038545	Cul7	2510004L20Rik|AA409809|C230011P08Rik|p185|p193	cullin 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76090615-2	chr15	76090515	76090715	+	872.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358359, intron 3 of 17)	CpG-4987	1075.0	NM_001358359	223649.0	Mm.101946	NM_144847	ENSMUSG00000075590	Nrbp2	BC011468	nuclear receptor binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111122551-2	chr12	111122451	111122651	+	573.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43819.0	NM_001286122	22031.0	Mm.27431	NM_011632	ENSMUSG00000021277	Traf3	AI528849|CAP-1|CD40bp|CRAF1|LAP1|T-BAM|amn	TNF receptor-associated factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-11844199-3	chr18	11844098	11844298	+	854.172241	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022021, intron 1 of 8)	intron (NM_022021, intron 1 of 8)	-3760.0	NR_035447	100316686.0		NR_035447	ENSMUSG00000084565	Mir1901	Mirn1901|mmu-mir-1901	microRNA 1901	ncRNA	2.98270525860976	1.80102242760792	1.23417430205485	2.16385909100996	3.28764770975286	2.18601033259407	1.24286161362372	2.30013262248159	0.506421288082673	0.626891109944344	0.980912176761026
Merged-chr8-10872146-2	chr8	10872046	10872246	+	695.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040705, exon 6 of 6)	non-coding (NR_040705, exon 6 of 6)	10308.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-34769156-2	chr2	34769056	34769256	+	668.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-2934.0	NM_001163434	14828.0	Mm.330160	NM_022310	ENSMUSG00000026864	Hspa5	AL022860|AU019543|Bip|D2Wsu141e|D2Wsu17e|Grp78|Hsce70|SEZ-7|Sez7|baffled|mBiP	heat shock protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-85588695-1	chr1	85588595	85588795	+	989.3333130000001	f1_balb.idr	intron (NM_030194, intron 5 of 11)	intron (NM_030194, intron 5 of 11)	10115.0	NM_030194	109032.0	Mm.335802	NM_030194	ENSMUSG00000070034	Sp110	5031415C07Rik|52kDa|5830484A20Rik|Ifi75|Ipr1	Sp110 nuclear body protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-121408493-2	chr10	121408393	121408593	+	923.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER21B|LTR|ERVL	43403.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-38476418-4	chr16	38476330	38476530	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359898, intron 2 of 5)	intron (NM_001359898, intron 2 of 5)	17497.0	NM_009855	12519.0	Mm.89474	NM_009855	ENSMUSG00000075122	Cd80	B71|Cd28l|Ly-53|Ly53|MIC17|TSA1	CD80 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-68978843-4	chr2	68978750	68978950	+	983.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347161, intron 3 of 10)	intron (NM_001347161, intron 3 of 10)	117409.0	NM_001347161	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-121197183-4	chr4	121197078	121197278	+	978.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346660, intron 1 of 7)	intron (NM_001346660, intron 1 of 7)	17906.0	NM_001346660	109263.0	Mm.215745	NM_001081013	ENSMUSG00000049878	Rlf	9230110M18Rik|AI195322|MommeD8	rearranged L-myc fusion sequence	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-23701376-4	chr13	23701280	23701480	+	999.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010424)	TTS (NM_010424)	-2922.0	NM_178208	319155.0	Mm.261662	NM_178208	ENSMUSG00000060678	Hist1h4c	-	histone cluster 1, H4c	protein-coding	0.881217935571387	1.3166716850935	0.944910888388603	0.725166840167992	1.16583832395975	1.32801760611325	0.95156525095929	1.88559871019144	1.6997234910555	0.20926358231839	0.698750491439807
Merged-chr6-72550856-3	chr6	72550773	72550973	+	783.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271395, intron 1 of 9)	L3|LINE|CR1	1226.0	NM_001271395	12332.0	Mm.18626	NM_007599	ENSMUSG00000056737	Capg	gCap39|mbh1	capping protein (actin filament), gelsolin-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-54408473-4	chr14	54408284	54408484	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011405, intron 4 of 11)	intron (NM_011405, intron 4 of 11)	1088.0	NM_001253680	20540.0	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	4.29801958583687	3.5274372128003	3.60694188785315	4.27076176067079	4.73789538811859	5.01380804413717	4.36507256258013	4.87880561291137	1.00538367357915	0.0141101195538084	0.138992786869124
Merged-chr11-95831232-2	chr11	95831132	95831332	+	746.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_153104, exon 3 of 3)	exon (NM_153104, exon 3 of 3)	6732.0	NM_153104	237928.0	Mm.133075	NM_153104	ENSMUSG00000050860	Phospho1	D11Moh36|Phospo1	phosphatase, orphan 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-138255697-4	chr5	138255624	138255824	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001081108, exon 1 of 4)	5' UTR (NM_001081108, exon 1 of 4)	242.0	NM_001081108	66096.0	Mm.206901	NM_001081108	ENSMUSG00000050552	Lamtor4	0910001L09Rik|AV006840	late endosomal/lysosomal adaptor, MAPK and MTOR activator 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-174707421-1	chr1	174707321	174707521	+	635.0	f1_c57bl6.idr	intron (NM_019445, intron 13 of 17)	intron (NM_019445, intron 13 of 17)	205596.0	NM_019445	54418.0	Mm.330620	NM_019445	ENSMUSG00000028354	Fmn2	AU024104	formin 2	protein-coding	0.160158408553151	0.524968584665794	-0.0991730902866759	0.532228893691244	-0.108896727920095	-0.0927826034755201	-0.0980223836696696	-0.1024965106486	-3.8953973568494	0.0826793155188481	1
Merged-chr13-63430580-2	chr13	63430491	63430691	+	640.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347515, intron 1 of 15)	intron (NM_001347515, intron 1 of 15)	1154.0	NM_001347515	14088.0	Mm.126106	NM_007985	ENSMUSG00000021461	Fancc	Facc	Fanconi anemia, complementation group C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-72106805-4	chr1	72106698	72106898	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-101603.0	NR_040454	71134.0	Mm.370574	NR_040454	ENSMUSG00000101848	4933417E11Rik	-	RIKEN cDNA 4933417E11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-88953751-1	chr11	88953651	88953851	+	580.0	f1_c57bl6.idr	intron (NM_029023, intron 1 of 12)	intron (NM_029023, intron 1 of 12)	1691.0	NM_029023	74617.0	Mm.34126	NM_029023	ENSMUSG00000000278	Scpep1	2410018F01Rik|4833411K15Rik|AI957256|Risc	serine carboxypeptidase 1	protein-coding	0.466241483352445	1.35636006053876	0.492200887692375	0.687184153015004	0.653538100636818	0.5071865200422	1.67684157622797	1.00860620699835	1.00866004822575	0.53298142142435	0.952082138848632
Merged-chr9-64222296-4	chr9	64222188	64222388	+	881.4249880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008927, intron 1 of 10)	intron (NM_008927, intron 1 of 10)	-12913.0	NM_033607	93841.0	Mm.390180	NM_033607	ENSMUSG00000035337	Uchl4	-	ubiquitin carboxyl-terminal esterase L4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-25045480-2	chr17	25045387	25045587	+	751.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_134126, intron 13 of 29)	intron (NM_134126, intron 13 of 29)	29401.0	NM_134126	106633.0	Mm.32802	NM_134126	ENSMUSG00000024169	Ift140	AI661311|Tce5|Wdtc2|mKIAA0590	intraflagellar transport 140	protein-coding	1.21884158992194	0.361028381718721	1.10688811569087	1.15418717447926	0.333351695969196	0.36316453361777	0.353594840158488	0.34533087013394	-4.54555396299185	0.015437854568503	1
Merged-chr15-66553946-1	chr15	66553846	66554046	+	545.0	f1_c57bl6.idr	intron (NM_172514, intron 4 of 9)	intron (NM_172514, intron 4 of 9)	7100.0	NM_172514	213068.0	Mm.132299	NM_172514	ENSMUSG00000036944	Tmem71	AI661017|E430024D12	transmembrane protein 71	protein-coding	-1.53362919331644	-1.50201671710775	-1.51157659084044	-1.08120497225282	-1.53141005593807	-1.49994505258991	-1.50941244497383	-1.51802371459528	-1.94474658522739	0.577200604274218	1
Merged-chr19-11910685-5	chr19	11910559	11910759	+	909.4799800000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-1740.0	NM_172635	225929.0	Mm.42711	NM_172635	ENSMUSG00000046139	Patl1	AV312086|Pat1b	protein associated with topoisomerase II homolog 1 (yeast)	protein-coding	0.984562783622958	0.705859681354767	0.194068608132917	0.626976774002016	0.181560137018777	0.202256257233071	0.195544776745434	0.362030840956145	-3.38441808264974	0.0870494079527985	1
Merged-chr13-24407020-4	chr13	24406923	24407123	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111110, intron 2 of 16)	MER21-int|LTR|ERVL	-8099.0	NM_007717	12763.0	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-55536619-4	chr13	55536521	55536721	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134059)	promoter-TSS (NM_134059)	37.0	NM_134059	72935.0	Mm.205045	NM_134059	ENSMUSG00000021494	Ddx41	2900024F02Rik|AA958953|ABS|AI324246	DEAD (Asp-Glu-Ala-Asp) box polypeptide 41	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70135797-2	chr14	70135697	70135897	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021328, intron 8 of 8)	intron (NM_021328, intron 8 of 8)	17994.0	NM_146055	219158.0	Mm.218284	NM_146055	ENSMUSG00000033712	Ccar2	2610301G19Rik|Dbc1|mKIAA1967	cell cycle activator and apoptosis regulator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-113266757-3	chr13	113266639	113266839	+	794.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57080.0	NM_023612	71690.0	Mm.38929	NM_023612	ENSMUSG00000042379	Esm1	0610042H23Rik|AV004503|ESM-1	endothelial cell-specific molecule 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-119351049-3	chr2	119350956	119351156	+	742.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026929)	promoter-TSS (NM_026929)	-186.0	NM_026929	69065.0	Mm.35083	NM_026929	ENSMUSG00000027313	Chac1	1810008K03Rik	ChaC, cation transport regulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5771297-6	chr19	5771149	5771349	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001361921, exon 1 of 17)	exon (NM_001361921, exon 1 of 17)	170.0	NM_023912	78891.0	Mm.276063	NM_023912	ENSMUSG00000024941	Scyl1	2810011O19Rik|C85140|Ntkl|mdf|mfd|p105	SCY1-like 1 (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180519184-2	chr1	180519084	180519284	+	597.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-35680.0	NM_001081227	381310.0	Mm.44791	NM_001081227	ENSMUSG00000053963	Stum	6330403A02Rik|Gm10001|R75555	mechanosensory transduction mediator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-21959775-2	chr3	21959675	21959875	+	596.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-116877.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65568876-4	chr9	65568763	65568963	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153119, intron 2 of 5)	MTD|LTR|ERVL-MaLR	11224.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	6.14714807485436	5.88238942131949	5.37220343409387	5.99319647268947	6.47448817071834	6.04046759122441	5.82831990992624	6.60500902728327	0.433702445013856	0.0936020958592112	0.473989003707998
Merged-chr17-23969433-4	chr17	23969328	23969528	+	865.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	5802.0	NM_013921	30943.0	Mm.142568	NM_013921	ENSMUSG00000024124	Prss30	2010015P21Rik|Disp|Disp1|Tmprss8	protease, serine 30	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-49250544-4	chr11	49250410	49250610	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001110150)	promoter-TSS (NM_001110150)	-42.0	NM_001110150	17308.0	Mm.196933	NM_010794	ENSMUSG00000020346	Mgat1	Mgat-1	mannoside acetylglucosaminyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-19552827-2	chr2	19552727	19552927	+	914.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027600, intron 1 of 16)	intron (NM_027600, intron 1 of 16)	1083.0	NM_027600	70909.0	Mm.158488	NM_027600	ENSMUSG00000026734	4921504E06Rik	4921522E24Rik	RIKEN cDNA 4921504E06 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81395293-6	chr10	81395137	81395337	+	771.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008688)	TTS (NM_008688)	2173.0	NM_001099917	72273.0	Mm.253147	NM_001099917	ENSMUSG00000078439	Smim24	2210404O07Rik	small integral membrane protein 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-55388289-2	chr12	55388189	55388389	+	711.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310583, intron 1 of 6)	PB1D10|SINE|Alu	4067.0	NM_001310583	26443.0	Mm.30210	NM_011968	ENSMUSG00000021024	Psma6	IOTA	proteasome (prosome, macropain) subunit, alpha type 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-100132428-2	chr15	100132328	100132528	+	597.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159361, intron 3 of 37)	intron (NM_001159361, intron 3 of 37)	-21968.0	NM_172819	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-47016662-1	chr7	47016562	47016762	+	586.0	f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	-8248.0	NM_175318	101685.0	Mm.155687	NM_175318	ENSMUSG00000049516	Spty2d1	5830435K17Rik|AI852426|P16H6	SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-117270489-2	chr4	117270385	117270585	+	597.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_025739)	TTS (NM_025739)	18145.0	NM_029589	68777.0	Mm.331805	NM_026837	ENSMUSG00000048772	Tmem53	1110038M16Rik|1500001P22Rik|1700012A05Rik	transmembrane protein 53	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-136132169-2	chr4	136132069	136132269	+	586.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-11653.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-72241718-3	chr5	72241621	72241821	+	943.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_003966, intron 4 of 22)	intron (NR_003966, intron 4 of 22)	38378.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6872804-4	chr19	6872739	6872939	+	924.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-14628.0	NM_001081291	78317.0	Mm.329596	NM_198008	ENSMUSG00000047810	Ccdc88b	2610041P08Rik|Ccdc88	coiled-coil domain containing 88B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-95242813-2	chr9	95242713	95242913	+	622.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	164457.0	NM_018763	54371.0	Mm.212446	NM_018763	ENSMUSG00000033350	Chst2	AI428561|AW121776|C130041E03Rik|Chts2|GST-2|GlcNAc6ST|Gn6st	carbohydrate sulfotransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-58160158-4	chr2	58160067	58160267	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_139200)	promoter-TSS (NM_139200)	-45.0	NM_139200	227929.0	Mm.273905	NM_139200	ENSMUSG00000026832	Cytip	A130053M09Rik|AI462064|C80816|Cbp|Cybr|Pscdbp	cytohesin 1 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122093211-1	chr5	122093111	122093311	+	843.5	f0_balb.idr	Intergenic	Intergenic	-7740.0	NM_010861	17906.0	Mm.1529	NM_010861	ENSMUSG00000013936	Myl2	MLC-2|MLC-2s/v|MLC-2v|Mlc2v|Mylpc	myosin, light polypeptide 2, regulatory, cardiac, slow	protein-coding	-0.961808289013217	-0.941143281918953	-0.953353259954851	-0.9565109400711	-0.961015840561242	-0.938024035002784	0.030272756003758	-0.955957512668286	3.38343409954699	0.275427317743097	1
Merged-chr1-192745666-4	chr1	192745553	192745753	+	941.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144881, intron 3 of 11)	U5|snRNA|snRNA	25566.0	NM_144881	226861.0	Mm.145857	NM_144881	ENSMUSG00000037375	Hhat	2810432O22Rik|AI462858|AP-2CRE|Skn|Tg(TFAP2A-cre)1Will	hedgehog acyltransferase	protein-coding	3.68973035677479	3.6438084128142	3.92242510670711	3.0717900331046	3.2040569942805	2.92102307578967	3.76770648412562	2.97944063729752	-0.549913956556368	0.330830638496449	0.83197671091297
Merged-chr8-11091780-2	chr8	11091680	11091880	+	823.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-83350.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-145852081-2	chr4	145851981	145852181	+	563.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	14862.0	NR_033612	236069.0	Mm.276881	NR_033612	ENSMUSG00000096233	Gm13238	-	carnitine deficiency-associated gene expressed in ventricle 3 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-117916014-3	chr4	117915919	117916119	+	941.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1020.0	NM_146152	230673.0	Mm.287810	NM_146152	ENSMUSG00000033365	Ipo13	Imp13|Kap13|Ranbp13	importin 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-38911371-4	chr6	38911279	38911479	+	911.283325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7607.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-75790167-2	chr2	75790067	75790267	+	622.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42010.0	NM_172666	228061.0	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101896691-4	chr7	101896585	101896785	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291349, intron 1 of 4)	intron (NM_001291349, intron 1 of 4)	354.0	NM_001291349	75430.0	Mm.284491	NM_027532	ENSMUSG00000030649	Anapc15	3200002M19Rik|6330414C15Rik|APC15	anaphase prompoting complex C subunit 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-86761744-2	chr11	86761644	86761844	+	942.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-4177.0	NM_001356393	67300.0	Mm.254588	NM_001003908	ENSMUSG00000047126	Cltc	3110065L21Rik|CHC|R74732	clathrin, heavy polypeptide (Hc)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-119648619-4	chr1	119648500	119648700	+	869.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145506, intron 1 of 24)	CpG	400.0	NM_001113416	226352.0	Mm.253156	NM_145506	ENSMUSG00000026383	Epb41l5	1700030C16Rik|AL022914|BE37|E230025E14Rik|Epb4.1l5|Lulu1|NBL5	erythrocyte membrane protein band 4.1 like 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-88707967-2	chr10	88707867	88708067	+	693.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	23134.0	NM_001037166	237433.0	Mm.478763	NM_001037166		Gm4925	EG237433	predicted gene 4925	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-56209044-4	chr9	56208964	56209164	+	759.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172924, intron 6 of 6)	L1MA5|LINE|L1	-47994.0	NM_019793	56434.0	Mm.28484	NM_019793	ENSMUSG00000032324	Tspan3	1700055K04Rik|TM4-A|Tm4sf8	tetraspanin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124874976-3	chr6	124874876	124875076	+	934.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013488, intron 3 of 9)	intron (NM_013488, intron 3 of 9)	-10993.0	NM_001355257	14788.0	Mm.2514	NM_013533	ENSMUSG00000038390	Gpr162	A-2|BC031437|Grca	G protein-coupled receptor 162	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-59626662-1	chr4	59626562	59626762	+	715.333313	f0_c57.idr	intron (NM_001015681, intron 1 of 3)	CpG	451.0	NM_153158	230259.0	Mm.45688	NM_153158	ENSMUSG00000045071	E130308A19Rik	-	RIKEN cDNA E130308A19 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107974677-2	chr9	107974577	107974777	+	783.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023738)	promoter-TSS (NM_023738)	-890.0	NM_023738	74153.0	Mm.277125	NM_023738	ENSMUSG00000032596	Uba7	1300004C08Rik|Ube1l	ubiquitin-like modifier activating enzyme 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-8757195-4	chr10	8757090	8757290	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 8 of 19)	intron (NM_175155, intron 8 of 19)	128880.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	5.14496498824479	5.09503150479036	5.87848509155908	4.41319914920799	4.87021079863458	4.6637269833639	4.67152230859798	3.93324335501065	-0.782594742349536	0.0455435224669579	0.307496285056087
Merged-chr11-50225281-4	chr11	50225199	50225399	+	995.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145926)	promoter-TSS (NM_145926)	-36.0	NM_145926	103534.0	Mm.86759	NM_145926	ENSMUSG00000036620	Mgat4b	AA407995|GnTIVb	mannoside acetylglucosaminyltransferase 4, isoenzyme B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-87022648-3	chr9	87022553	87022753	+	865.93335	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359962, intron 1 of 14)	intron (NM_001359962, intron 1 of 14)	624.0	NM_001359962	266690.0	Mm.30166	NM_024195	ENSMUSG00000032872	Cyb5r4	2810034J18Rik|B5+B5R|C79736|Cb5cb5r|Ncb5or|b5/b5r|b5b5r	cytochrome b5 reductase 4	protein-coding	2.33449259485056	2.01995969628457	2.18405561293121	1.90159911830314	1.56122708118585	1.52171598992094	2.0913968755553	1.77845101446764	-1.03994603821175	0.278818391945095	0.782334674124706
Merged-chr15-100590721-3	chr15	100590618	100590818	+	793.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304965, intron 3 of 10)	RMER6B|LTR|ERVK	-4353.0	NM_010127	19009.0	Mm.28825	NM_010127	ENSMUSG00000009739	Pou6f1	2310038G18Rik|C79593|Emb|cns-1	POU domain, class 6, transcription factor 1	protein-coding	1.85580799461381	2.45763732338547	1.69380266087677	1.50388329574963	0.909165926164646	0.976923639791277	1.19849721726352	1.6503768032383	-2.35123706815075	0.0546270713456728	0.343509225369697
Merged-chr10-81417738-2	chr10	81417638	81417838	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026756, intron 2 of 8)	intron (NM_026756, intron 2 of 8)	-1441.0	NR_106141	102465778.0		NR_106141	ENSMUSG00000105379	Mir1191b	mmu-mir-1191b	microRNA 1191b	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-21985082-4	chr6	21984986	21985186	+	997.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081351)	promoter-TSS (NM_001081351)	-824.0	NM_001081351	214642.0	Mm.221404	NM_001081351	ENSMUSG00000062980	Cped1	6720481P07|A430107O13Rik|AI552584	cadherin-like and PC-esterase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-86166409-4	chr12	86166315	86166515	+	743.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2926.0	NR_046081	328136.0	Mm.312050	NR_046081	ENSMUSG00000097543	Gm805	-	predicted gene 805	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-70043007-1	chr13	70042907	70043107	+	597.0	f0_c57.idr	intron (NR_131156, intron 2 of 2)	intron (NR_131156, intron 2 of 2)	-14659.0	NR_045965	74280.0	Mm.273343	NR_045965	ENSMUSG00000099639	1700084F23Rik	1700003E18Rik|4930589D02Rik	RIKEN cDNA 1700084F23 gene	ncRNA	-1.18843546917626	-0.672880934833519	-1.0000600259471	-1.18308460022907	-1.18795000374374	-1.1605532696126	-1.17150120785794	-1.18145913969456	-2.61982285023827	0.417764462822768	1
Merged-chr12-99523090-4	chr12	99523005	99523205	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-40736.0	NR_136760	102639404.0	Mm.396324	NR_136760	ENSMUSG00000097917	Gm26839	-	predicted gene, 26839	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-36554035-4	chr5	36553939	36554139	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133910, intron 2 of 13)	B3A|SINE|B2	-23416.0	NM_001113364	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	5.06453944076731	4.22935121857626	4.22293771227	4.28457161676657	4.52502142225724	5.20829559303535	5.12739664948509	4.85028950941284	0.529477613315265	0.160842027807927	0.621041401943631
Merged-chr4-134734634-7	chr4	134734544	134734744	+	906.88092	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30354.0	NM_207237	230815.0	Mm.18905	NM_207237	ENSMUSG00000037306	Man1c1	AI593348	mannosidase, alpha, class 1C, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-24344807-2	chr2	24344707	24344907	+	908.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159562)	promoter-TSS (NM_001159562)	-484.0	NM_001159562	16181.0	Mm.882	NM_031167	ENSMUSG00000026981	Il1rn	F630041P17Rik|IL-1ra	interleukin 1 receptor antagonist	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-116005404-2	chr6	116005304	116005504	+	584.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-10399.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126567877-2	chr8	126567777	126567977	+	579.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Eulor6E|DNA?|DNA?	25559.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	0.63850253993946	1.02743856712065	0.240577431034784	0.234356159627367	0.388730437942541	1.04071612151099	0.242348008987096	0.235446154150138	-0.282071376247763	0.882552413205148	1
Merged-chr8-104321956-3	chr8	104321838	104322038	+	905.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028524)	promoter-TSS (NM_028524)	-289.0	NM_028524	75502.0	Mm.232593	NM_028524	ENSMUSG00000035785	Cmtm2b	1700013O04Rik|Cklfsf22|Cklfsf2b	CKLF-like MARVEL transmembrane domain containing 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-15665222-3	chr18	15665109	15665309	+	785.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199055, intron 1 of 3)	intron (NM_199055, intron 1 of 3)	52837.0	NM_199055	71367.0	Mm.329304	NM_199055	ENSMUSG00000047161	Chst9	5430438D01Rik	carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75592854-4	chr11	75592767	75592967	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008850, intron 2 of 11)	intron (NM_008850, intron 2 of 11)	4788.0	NM_008850	18738.0	Mm.3128	NM_008850	ENSMUSG00000017781	Pitpna	Pitpn|vb|vibrator	phosphatidylinositol transfer protein, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-102076950-2	chr7	102076850	102077050	+	977.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011644, intron 3 of 21)	B2_Mm2|SINE|B2	5731.0	NM_011644	102443351.0	Mm.292904	NM_011644	ENSMUSG00000070425	Xntrpc	Xndr-trpc2	Xndc1-transient receptor potential cation channel, subfamily C, member 2 readthrough	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-81323614-2	chr5	81323514	81323714	+	700.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359826, intron 4 of 24)	intron (NM_001359826, intron 4 of 24)	302021.0	NM_198702	319387.0	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-77544864-4	chr9	77544775	77544975	+	987.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172528)	promoter-TSS (NM_172528)	-23.0	NM_001146048	214345.0	Mm.28534	NM_172528	ENSMUSG00000032352	Lrrc1	A430093J20Rik|AU016091|D030059I21|mKIAA4018	leucine rich repeat containing 1	protein-coding	2.84010474160515	2.3037180660938	2.34462033614344	1.49101043360346	1.62439997179855	2.93415175105283	1.27566665523023	2.28752880634859	-0.296558200667289	0.765439475317085	0.998431161219273
Merged-chr17-5807322-3	chr17	5807234	5807434	+	955.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7844.0	NR_045080	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-72275400-4	chr9	72275246	72275446	+	915.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146224, intron 1 of 21)	CpG	458.0	NM_001311105	235469.0	Mm.242791	NM_146224	ENSMUSG00000038535	Zfp280d	A930005F02Rik|BC027163|Suhw4|ZNF634|Znf280d	zinc finger protein 280D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-100439292-3	chr6	100439196	100439396	+	710.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-88104.0	NR_040525	73395.0	Mm.69413	NR_040525	ENSMUSG00000101553	1700049E22Rik	-	RIKEN cDNA 1700049E22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111172932-2	chr12	111172832	111173032	+	968.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286122, intron 1 of 9)	intron (NM_001286122, intron 1 of 9)	6562.0	NM_011632	22031.0	Mm.27431	NM_011632	ENSMUSG00000021277	Traf3	AI528849|CAP-1|CD40bp|CRAF1|LAP1|T-BAM|amn	TNF receptor-associated factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-61103454-2	chr18	61103354	61103554	+	721.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB5|LINE|L1	-2118.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-16978149-2	chr11	16978049	16978249	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019549, intron 9 of 9)	intron (NM_019549, intron 9 of 9)	26739.0	NM_176982	319701.0	Mm.120672	NM_176982	ENSMUSG00000044966	Fbxo48	A630050E13Rik	F-box protein 48	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132260573-4	chr4	132260496	132260696	+	828.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122992, intron 1 of 10)	intron (NM_001122992, intron 1 of 10)	953.0	NM_020273	56809.0	Mm.103489	NM_020273	ENSMUSG00000028901	Gmeb1	1110050A04Rik|AI256615|AI481278	glucocorticoid modulatory element binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-10498350-4	chr16	10498261	10498461	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302619, intron 2 of 19)	intron (NM_001302619, intron 2 of 19)	8580.0	NM_001243761	12265.0	Mm.249560	NM_007575	ENSMUSG00000022504	Ciita	C2ta|EG669998|Gm9475|Mhc2ta	class II transactivator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91613179-4	chr16	91613065	91613265	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	5834.0	NM_001099738	246738.0	Mm.101927	NM_138664	ENSMUSG00000039763	Dnajc28	BC020175|ORF28	DnaJ heat shock protein family (Hsp40) member C28	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-54857202-1	chr4	54857102	54857302	+	828.0	f0_balb.idr	Intergenic	Intergenic	-90743.0	NM_172867	242466.0	Mm.102904	NM_172867	ENSMUSG00000060206	Zfp462	6030417H05|9430078C22Rik|Gt4-2|Zfpip	zinc finger protein 462	protein-coding	0.819406201168923	0.868556880585173	1.25034568929001	1.70374359578439	1.99065918239438	0.872071326953868	1.41598061502402	1.7138743770095	1.21848233431454	0.378675694789619	0.871397690824179
Merged-chr9-22367683-4	chr9	22367574	22367774	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028390, intron 8 of 23)	A-rich|Low_complexity|Low_complexity	21532.0	NM_028390	68743.0	Mm.282751	NM_028390	ENSMUSG00000036777	Anln	1110037A17Rik|2900037I21Rik|C78101|Scraps	anillin, actin binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-116449768-4	chr12	116449659	116449859	+	898.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133762, intron 26 of 28)	MTD|LTR|ERVL-MaLR	-35961.0	NM_011215	19276.0	Mm.206054	NM_011215	ENSMUSG00000056553	Ptprn2	4930425H11Rik|IA2beta|PTP-NP|Phol|mKIAA0387|phogrin	protein tyrosine phosphatase, receptor type, N polypeptide 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30551473-2	chr7	30551373	30551573	+	790.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183321, intron 1 of 11)	B1_Mm|SINE|Alu	799.0	NM_183321	333193.0	Mm.34885	NM_183321	ENSMUSG00000036864	Proser3	-	proline and serine rich 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5718216-2	chr19	5718107	5718307	+	899.25	f0_c57.idr|f1_c57bl6.idr	exon (NM_001114597, exon 9 of 19)	exon (NM_001114597, exon 9 of 19)	8110.0	NM_001114595	114601.0	Mm.210447	NM_053252	ENSMUSG00000024937	Ehbp1l1	G430002G23Rik	EH domain binding protein 1-like 1	protein-coding	3.37950296634415	3.93940423212076	4.03858919283998	4.8676255208987	1.88988806414687	2.78467798768066	1.53664226048334	2.57882442201907	-3.02444291112833	9.25717748165094e-06	0.000430494633429643
Merged-chr3-31232993-4	chr3	31232877	31233077	+	998.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172861, intron 4 of 7)	intron (NM_172861, intron 4 of 7)	77342.0	NM_172861	241919.0	Mm.285366	NM_172861	ENSMUSG00000069072	Slc7a14	A930013N06|BC061928	solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-33721888-4	chr5	33721795	33721995	+	830.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163217)	promoter-TSS (NM_001163217)	171.0	NM_001163215	14184.0	Mm.6904	NM_008010	ENSMUSG00000054252	Fgfr3	CD333|FR3|Fgfr-3|Flg-2|HBGFR|Mfr3|sam3	fibroblast growth factor receptor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122111142-1	chr8	122111042	122111242	+	851.0	f0_balb.idr	Intergenic	Intergenic	133118.0	NR_106096	102466915.0		NR_106096	ENSMUSG00000099140	Mir7237	Gm27482|mmu-mir-7237	microRNA 7237	ncRNA	0.632952776656948	0.370603769915855	0.362414660312468	0.681845659740616	0.505345912048396	1.14514217555873	1.08576592352284	0.357169656164972	1.75620246047335	0.314005258409958	1
Merged-chr6-148539033-4	chr6	148538917	148539117	+	999.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	75292.0	NR_045867	622319.0	Mm.491049	NM_001037912	ENSMUSG00000070995	Gm6313	EG622319	predicted gene 6313	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-153564503-2	chr3	153564403	153564603	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011372, intron 1 of 4)	intron (NM_011372, intron 1 of 4)	160630.0	NM_011372	20447.0	Mm.296453	NM_011372	ENSMUSG00000052544	St6galnac3	Siat7c	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-116077344-3	chr4	116077250	116077450	+	766.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153521, intron 1 of 9)	intron (NM_153521, intron 1 of 9)	2081.0	NM_153521	230654.0	Mm.3655	NM_153521	ENSMUSG00000028703	Lrrc41	AA409966|AW555107|D630045E04Rik|D730026A16Rik|MUF1	leucine rich repeat containing 41	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167783632-3	chr2	167783532	167783732	+	785.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	92455.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81020478-2	chr15	81020378	81020578	+	761.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001082536, intron 7 of 13)	intron (NM_001082536, intron 7 of 13)	42713.0	NM_134091	105835.0	Mm.274943	NM_134091	ENSMUSG00000042303	Sgsm3	1810012I01Rik|AI428557|BB175482|Cip85|R75178|RUSC3|Rutbc3	small G protein signaling modulator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-73345767-2	chr13	73345667	73345867	+	654.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045293, intron 2 of 2)	B3|SINE|B2	1617.0	NR_045293	432777.0	Mm.415319	NR_045293	ENSMUSG00000113346	Eprn	AU019512|D630045M09Rik	ephemeron, early developmental lncRNA	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119425157-2	chr11	119425057	119425257	+	874.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	34685.0	NR_035453	100316690.0		NR_035453	ENSMUSG00000088015	Mir1932	mir-1932|mmu-mir-1932	microRNA 1932	ncRNA	-1.84354474832578	-1.81325489144778	-1.53416061964661	-1.82993901100912	-1.8414184563789	-1.81126990231468	-1.82034119297928	-1.82859217979378	-1.52252619601533	0.665276690233728	1
Merged-chr13-49189231-4	chr13	49189090	49189290	+	969.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013610, intron 1 of 3)	intron (NM_013610, intron 1 of 3)	1643.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-56252965-2	chr19	56252865	56253065	+	640.583374	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13B|LTR|ERVK	-34947.0	NM_001329936	226243.0	Mm.25791	NM_146101	ENSMUSG00000025075	Habp2	AI035669|FSAP|HABP|HGFAL|PHBP	hyaluronic acid binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-110373582-3	chr12	110373482	110373682	+	883.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-73597.0	NM_001135001	26931.0	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-31180334-2	chr6	31180234	31180434	+	865.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_110470, intron 2 of 2)	intron (NR_110470, intron 2 of 2)	38140.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-33539325-2	chr17	33539219	33539419	+	629.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_137629, intron 10 of 23)	intron (NR_137629, intron 10 of 23)	15234.0	NM_001329147	224697.0	Mm.29304	NM_172619	ENSMUSG00000024299	Adamts10	9430006O18|AW045948|Adam-ts10|Adamts-10|Znmp	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 10	protein-coding	1.21683580035757	1.84364013615553	2.19772649293755	1.59528046819826	1.52790153504426	1.09547429535389	2.21606440066329	1.60339275308508	-0.244030094256232	0.828593265323212	0.998431161219273
Merged-chr4-123921270-4	chr4	123921151	123921351	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017475, intron 3 of 6)	intron (NM_017475, intron 3 of 6)	3818.0	NM_017475	54170.0	Mm.220922	NM_017475	ENSMUSG00000028646	Rragc	AU041672|Gtr2|RAGC|TIB929|YGR163W	Ras-related GTP binding C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-120432181-4	chr2	120432083	120432283	+	925.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172672, intron 10 of 23)	HAL1|LINE|L1	-28067.0	NM_001110496	211499.0	Mm.260712	NM_173734	ENSMUSG00000033808	Tmem87a	A930025J12Rik	transmembrane protein 87A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-20538843-2	chr16	20538743	20538943	+	599.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001302970, intron 2 of 10)	intron (NM_001302970, intron 2 of 10)	3363.0	NM_009679	11773.0	Mm.18946	NM_009679	ENSMUSG00000022841	Ap2m1	-	adaptor-related protein complex 2, mu 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-16865034-1	chr12	16864934	16865134	+	546.0	f1_balb.idr	Intergenic	Intergenic	-29944.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	2.99490941859902	2.51861910452888	1.3146076171388	2.23389836532665	3.12585779305606	2.76374972540383	1.32361682288613	1.95019535223025	0.152540168962535	0.878061190486606	0.998431161219273
Merged-chr3-116651172-3	chr3	116651077	116651277	+	701.755554	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008246, intron 2 of 11)	intron (NM_008246, intron 2 of 11)	11500.0	NM_008246	15247.0	Mm.280077	NM_008246	ENSMUSG00000089911	Mfsd14a	Hiat1	major facilitator superfamily domain containing 14A	protein-coding	1.56017522389674	0.950023715493664	0.92255807979675	0.901035991460345	1.42151521805308	0.741735867031394	0.928655503715362	1.41395666067958	0.180183711399911	0.896596903670643	0.998431161219273
Merged-chr2-141030872-4	chr2	141030771	141030971	+	942.354126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013802, intron 5 of 18)	intron (NM_001013802, intron 5 of 18)	-359395.0	NM_178382	71436.0	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-70243470-1	chr9	70243370	70243570	+	540.0	f1_balb.idr	intron (NM_181072, intron 1 of 27)	intron (NM_181072, intron 1 of 27)	36120.0	NM_181072	71602.0	Mm.249311	NM_181072	ENSMUSG00000032220	Myo1e	2310020N23Rik|9130023P14Rik|AA407778|myosin-1e|myr 3	myosin IE	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-4812358-3	chr7	4812264	4812464	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133777)	promoter-TSS (NM_133777)	-24.0	NM_133777	77891.0	Mm.389787	NM_133777	ENSMUSG00000060860	Ube2s	0910001J09Rik|6720465F12Rik|AA409170|E2-EPF	ubiquitin-conjugating enzyme E2S	protein-coding	2.61651805948208	2.27168184743186	2.51823688783106	2.61404090568484	1.19831655670481	1.57708402387576	2.43962006559467	1.48769989931001	-1.81569797246043	0.0627501380027998	0.372329502694922
Merged-chr5-125404157-5	chr5	125404063	125404263	+	811.733337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14146.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	-0.696163854512474	-0.944158366292128	-0.954309940727346	-0.956421472985335	-0.959397431369417	-0.941573008238724	-0.953387951697818	-0.421153821691454	1.09996124479401	0.728260505401646	1
Merged-chr19-3665635-2	chr19	3665535	3665735	+	731.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008513, intron 1 of 22)	intron (NM_008513, intron 1 of 22)	20929.0	NM_008513	16973.0	Mm.274581	NM_008513	ENSMUSG00000024913	Lrp5	BMND1|HBM|LR3|LRP7|OPPG|mKIAA4142	low density lipoprotein receptor-related protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-58507426-1	chr3	58507326	58507526	+	570.0	f1_c57bl6.idr	Intergenic	Intergenic	-18395.0	NM_001005509	229317.0	Mm.21617	NM_001005509	ENSMUSG00000027810	Eif2a	D030048D22|D3Ertd194e	eukaryotic translation initiation factor 2A	protein-coding	2.26248684951913	2.55749333225563	2.46618343044657	2.71073277269106	1.13070122425825	1.51298170088229	2.15505573700288	1.17341119856089	-2.48761625745142	0.0164532717058691	0.154805680013323
Merged-chr9-118714875-1	chr9	118714775	118714975	+	967.0	f1_c57bl6.idr	intron (NM_001113514, intron 1 of 13)	intron (NM_001113514, intron 1 of 13)	3183.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	1.80555643879246	1.33622093142449	0.525341263730673	0.512786600371025	1.82575194848053	0.544684376040562	0.528875220138329	0.515002046248036	-0.540063502943457	0.86712999881253	0.998431161219273
Merged-chr2-116913729-4	chr2	116913632	116913832	+	748.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_040335)	TTS (NR_040335)	13580.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-144317790-4	chr1	144317692	144317892	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68688.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-109422265-2	chr11	109422165	109422365	+	860.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3681.0	NM_025275	13929.0	Mm.211850	NM_025275	ENSMUSG00000020610	Amz2	AA408420|ESTM12|X83328	archaelysin family metallopeptidase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-101827343-3	chr2	101827249	101827449	+	798.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355625, intron 1 of 8)	intron (NM_001355625, intron 1 of 8)	11631.0	NM_001110849	72446.0	Mm.24138	NM_175181	ENSMUSG00000032841	Prr5l	2600010E01Rik|4833411O04Rik|Protor-2|Protor2	proline rich 5 like	protein-coding	1.95295084743104	1.90739110076411	1.45778494965563	1.17846684281206	2.63428440239478	1.92185094956948	2.86200542547473	1.94510909487965	1.90693853747499	0.0549506327489719	0.344761543070179
Merged-chr4-128709945-2	chr4	128709845	128710045	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_018774, intron 5 of 14)	intron (NM_018774, intron 5 of 14)	-17626.0	NM_001195083	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-53781024-4	chr19	53780927	53781127	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170847, intron 1 of 13)	intron (NM_001170847, intron 1 of 13)	103721.0	NM_001170847	73713.0	Mm.313695	NM_001170847	ENSMUSG00000043639	Rbm20	1110018J23Rik|2010003H22Rik|AI646761	RNA binding motif protein 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-49197966-3	chr7	49197843	49198043	+	646.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111016, intron 2 of 38)	B1F|SINE|Alu	-35785.0	NR_154465	108167511.0	Mm.400599	NR_154465		9130015G15Rik	-	RIKEN cDNA 9130015G15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-68087699-3	chr7	68087595	68087795	+	924.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010513, intron 2 of 20)	intron (NM_010513, intron 2 of 20)	135438.0	NM_010513	16001.0	Mm.275742	NM_010513	ENSMUSG00000005533	Igf1r	A330103N21Rik|CD221|D930020L01|IGF-1R|hyft	insulin-like growth factor I receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72881824-1	chr6	72881724	72881924	+	630.0	f0_balb.idr	intron (NM_019715, intron 1 of 6)	MTD|LTR|ERVL-MaLR	17468.0	NM_001347231	74287.0	Mm.29194	NM_019715	ENSMUSG00000055239	Kcmf1	1700094M07Rik|Debt91|Pmcf	potassium channel modulatory factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-61419960-2	chr17	61419860	61420060	+	569.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER67A|LTR|ERV1	1461357.0	NM_207654	13640.0	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114702813-4	chr11	114702711	114702911	+	914.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053273, intron 6 of 13)	intron (NM_053273, intron 6 of 13)	-24601.0	NM_001034878	432611.0	Mm.212764	NM_001034878	ENSMUSG00000034706	Dnaic2	C030015H18Rik|Dnai2|Gm728|b2b3405Clo	dynein, axonemal, intermediate chain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-84184958-2	chr15	84184858	84185058	+	819.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_054088, intron 7 of 7)	intron (NM_054088, intron 7 of 7)	-7275.0	NM_178614	68653.0	Mm.290725	NM_178614	ENSMUSG00000022437	Samm50	1110030L07Rik	SAMM50 sorting and assembly machinery component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-183398075-1	chr1	183397975	183398175	+	628.0	f0_balb.idr	intron (NM_001277957, intron 4 of 10)	intron (NM_001277957, intron 4 of 10)	9090.0	NM_001277958	21339.0	Mm.383556	NM_021466	ENSMUSG00000072258	Taf1a	TAFI48|mTAFI48	TATA-box binding protein associated factor, RNA polymerase I, A	protein-coding	-1.05250607526984	-0.402739045299741	-1.04366794023272	-1.04875758567453	-0.897607459308638	-1.02893395323655	-1.040926557591	-1.04836336437307	-1.93683734114878	0.536907385174869	1
Merged-chr14-58071169-4	chr14	58071015	58071215	+	622.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1571.0	NM_013518	14180.0	Mm.8846	NM_013518	ENSMUSG00000021974	Fgf9	Eks	fibroblast growth factor 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-92804526-4	chr13	92804418	92804618	+	967.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9700.0	NM_011582	21828.0	Mm.20865	NM_011582	ENSMUSG00000021702	Thbs4	TSP4	thrombospondin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-160068080-4	chr2	160067974	160068174	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51421.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-90771979-1	chr5	90771879	90772079	+	955.0	f1_balb.idr	promoter-TSS (NM_019932)	promoter-TSS (NM_019932)	-456.0	NM_019932	56744.0	Mm.332490	NM_019932	ENSMUSG00000029373	Pf4	Cxcl4|Scyb4	platelet factor 4	protein-coding	1.81998880313994	3.03114396164278	2.39091877270205	1.54230681744474	2.90785648566467	2.49635329711966	1.80872443200079	1.75433697422068	0.0246907853582122	0.978834183245388	0.998431161219273
Merged-chr5-113008241-2	chr5	113008141	113008341	+	697.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285806, intron 1 of 20)	intron (NM_001285806, intron 1 of 20)	7297.0	NM_001285806	320129.0	Mm.285619	NM_177078	ENSMUSG00000042249	Grk3	4833444A01Rik|AI851927|AW551196|Adrbk-2|Adrbk2|Bark-2	G protein-coupled receptor kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117821400-2	chr11	117821300	117821500	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271729, intron 3 of 5)	PB1D10|SINE|Alu	-4519.0	NM_027827	71562.0	Mm.273958	NM_027827	ENSMUSG00000017718	Afmid	9030621K19Rik|Ammd|FKF|KFA|Kf|formylase	arylformamidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-130373911-1	chr1	130373811	130374011	+	628.0	f0_balb.idr	Intergenic	Intergenic	-48913.0	NR_151525	102640368.0		NR_151525	ENSMUSG00000087691	Gm15674	-	predicted gene 15674	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-35240077-4	chr4	35239964	35240164	+	930.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14184.0	NM_001081343	73205.0	Mm.331544	NM_001081343	ENSMUSG00000028300	3110043O21Rik	AI840585|C9orf72	RIKEN cDNA 3110043O21 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134172097-1	chr6	134171997	134172197	+	773.75	f0_balb.idr	intron (NM_001303102, intron 3 of 8)	intron (NM_001303102, intron 3 of 8)	136397.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44852554-2	chr7	44852457	44852657	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253920, intron 1 of 4)	intron (NM_001253920, intron 1 of 4)	2550.0	NM_001253920	67605.0	Mm.148007	NM_026270	ENSMUSG00000011096	Akt1s1	1110012J22Rik|AI227026|Lobe|Lobel|PRAS40	AKT1 substrate 1 (proline-rich)	protein-coding	0.934256975127924	0.882803065717847	1.15172594160605	0.985278401629234	0.941954504036489	1.55397021400737	1.02375479554139	0.65971054451573	0.478665400859968	0.730710757397785	0.998431161219273
Merged-chr16-44986287-4	chr16	44986202	44986402	+	934.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11A|LTR|ERVK	42624.0	NM_001128132	74603.0	Mm.297337	NM_027578	ENSMUSG00000036172	Cd200r3	4733401I18Rik|4833409J19Rik|AI505817|BB106877|mCD200RLb	CD200 receptor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45471156-4	chr7	45471098	45471298	+	826.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4300.0	NM_007527	12028.0	Mm.19904	NM_007527	ENSMUSG00000003873	Bax	-	BCL2-associated X protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-12158759-3	chr18	12158639	12158839	+	730.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	-9991.0	NM_029623	76482.0	Mm.196596	NM_029623	ENSMUSG00000024410	3110002H16Rik	2400010D15Rik|Mic-1|Mic1|Rmc1|Wdr98	RIKEN cDNA 3110002H16 gene	protein-coding	2.34090086380439	2.61604838812795	2.41297313097852	2.82747750546731	2.63236943800709	2.63474899748203	2.43113971535653	1.91958520876919	-0.274030936696226	0.724303871063668	0.998431161219273
Merged-chr18-75839503-5	chr18	75839470	75839670	+	957.966675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145356, intron 1 of 4)	intron (NM_145356, intron 1 of 4)	19392.0	NM_145356	207259.0	Mm.159332	NM_145356	ENSMUSG00000044646	Zbtb7c	B230208J24Rik|Kr-pok|Zbtb36	zinc finger and BTB domain containing 7C	protein-coding	1.73671721325555	0.882613897653451	1.72901845529366	1.2095651464507	1.40110348082361	0.885707716583181	1.07949786807278	1.58599697212264	-0.648227581833979	0.624439026947841	0.980630817450287
Merged-chr2-4516271-2	chr2	4516171	4516371	+	554.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 7 of 23)	B4A|SINE|B4	-43483.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-14159950-2	chr2	14159850	14160050	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14574.0	NM_001081310	625286.0	Mm.158781	NM_001081310	ENSMUSG00000061531	Tmem236	2010003H20Rik|Fam23a|Gm613	transmembrane protein 236	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-101083672-4	chr12	101083616	101083816	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_211355)	promoter-TSS (NM_211355)	-14.0	NM_001160214	68734.0	Mm.87077	NM_211355	ENSMUSG00000041846	Ppp4r3a	1110034C04Rik|BC064465|Smek1|mKIAA2010	protein phosphatase 4 regulatory subunit 3A	protein-coding	5.07813630281945	4.59015169622603	4.74553330179773	4.79059312089152	5.05979021468919	4.7842632838758	5.02698859030771	5.18951507841839	0.248299305640004	0.442897457152641	0.911647291190116
Merged-chr17-28406683-2	chr17	28406583	28406783	+	830.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010220, intron 8 of 10)	intron (NM_010220, intron 8 of 10)	-41467.0	NM_021478	22157.0	Mm.42102	NM_021478	ENSMUSG00000037446	Tulp1	Tulp1l	tubby like protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84424514-1	chr8	84424414	84424614	+	837.0	f1_c57bl6.idr	intron (NM_001252060, intron 1 of 47)	intron (NM_001252060, intron 1 of 47)	9150.0	NM_001252061	12286.0	Mm.334658	NM_007578	ENSMUSG00000034656	Cacna1a	APCA|BI|Caca1a|Cacnl1a4|Cav2.1|Ccha1a|EA2|FHM|HPCA|MHP|MHP1|SCA6|alpha1A|la|nmf352|rkr|smrl|tg	calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-98056749-3	chr4	98056636	98056836	+	869.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010905, intron 7 of 10)	URR1A|DNA|hAT-Charlie	279110.0	NM_010905	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131671307-4	chr1	131671195	131671395	+	979.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007799, intron 7 of 9)	intron (NM_007799, intron 7 of 9)	-17400.0	NM_001311096	226421.0	Mm.44508	NM_145509	ENSMUSG00000052688	Rab7b	5430435G22Rik	RAB7B, member RAS oncogene family	protein-coding	5.7248588091519	5.61428652316859	5.28085388520699	5.91179816086457	3.49140978758423	4.68519611507386	4.41871332797424	4.6945172627162	-1.49904431810683	1.61523372110125e-05	0.000679190684080823
Merged-chr11-62539040-7	chr11	62538894	62539094	+	938.0476070000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_028448, exon 1 of 5)	exon (NM_028448, exon 1 of 5)	267.0	NM_028448	73139.0	Mm.390409	NM_028448	ENSMUSG00000018509	Cenpv	3110013H01Rik|AA671303|Prr6	centromere protein V	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-57888241-4	chr9	57888119	57888319	+	977.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CAAAAA)n|Simple_repeat|Simple_repeat	-22767.0	NM_027086	69459.0	Mm.41735	NM_027086	ENSMUSG00000055720	Ubl7	2300004C15Rik	ubiquitin-like 7 (bone marrow stromal cell-derived)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-105781529-4	chr12	105781419	105781619	+	976.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030187, intron 17 of 17)	intron (NM_030187, intron 17 of 17)	-3178.0	NM_011112	18789.0	Mm.255877	NM_011112	ENSMUSG00000021111	Papola	Pap|PapIII|Plap	poly (A) polymerase alpha	protein-coding	3.08304294795358	3.90520657006496	3.7043116830817	4.36160814980569	3.01022777331751	3.5016597815105	3.80682408949029	4.1597942131898	-0.222998475831657	0.680487062859485	0.995506882643648
Merged-chr11-8676825-3	chr11	8676736	8676936	+	913.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa-int|LTR|ERVL-MaLR	-12301.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-8989921-1	chr19	8989821	8990021	+	626.0	f0_balb.idr	intron (NM_001039959, intron 1 of 5)	CpG	637.0	NM_001286518	66395.0	Mm.203866	NM_009643	ENSMUSG00000069833	Ahnak	DY6	AHNAK nucleoprotein (desmoyokin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-94243304-2	chr2	94243204	94243404	+	683.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1851.0	NR_029752	723953.0		NR_029752	ENSMUSG00000065511	Mir129-2	Mirn129-2|mir-129-2	microRNA 129-2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-129682924-2	chr6	129682826	129683026	+	598.5	f0_c57.idr|f1_balb.idr	Intergenic	RLTR12BD_Mm|LTR|ERVK	-3953.0	NM_010652	16641.0	Mm.56899	NM_010652	ENSMUSG00000030167	Klrc1	CD159a|NKG2A|NKG2B	killer cell lectin-like receptor subfamily C, member 1	protein-coding	0.209351667548793	-0.138385788014111	-0.142930578583232	-0.146428983512171	0.399531509716723	0.347249126705834	-0.141929206982617	-0.145818320451495	1.6354493016556	0.492697231096651	1
Merged-chr18-60821788-2	chr18	60821688	60821888	+	677.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011552, intron 17 of 24)	intron (NM_011552, intron 17 of 24)	9712.0	NR_039567	100628611.0		NR_039567	ENSMUSG00000093327	Mir5107	mir-5107|mmu-mir-5107|mu-mir-5107	microRNA 5107	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-152122311-3	chr3	152122209	152122409	+	910.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016867, intron 3 of 5)	intron (NM_016867, intron 3 of 5)	43591.0	NM_016867	54120.0	Mm.97	NM_016867	ENSMUSG00000039131	Gipc2	2200002N01Rik|AU021850|Semcap2	GIPC PDZ domain containing family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-24196270-2	chr1	24196170	24196370	+	782.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007740, intron 7 of 37)	intron (NM_007740, intron 7 of 37)	1067.0	NM_001290691	12839.0	Mm.154662	NM_007740	ENSMUSG00000026147	Col9a1	Col9a-1	collagen, type IX, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-87659916-1	chr16	87659816	87660016	+	705.0	f1_balb.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-39038.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	0.585444840290511	0.336065512564787	0.329030527539673	0.959721596591855	0.894290938586766	0.337649679223145	0.914601339598345	0.324544559028914	0.400708546051615	0.83127739462624	1
Merged-chr6-142715099-4	chr6	142715007	142715207	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12833.0	NM_001310143	20928.0	Mm.35670	NM_011511	ENSMUSG00000030249	Abcc9	AI414027|AI449286|SUR2A|SUR2B|Sur2	ATP-binding cassette, sub-family C (CFTR/MRP), member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-146152454-3	chr3	146152378	146152578	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005846, intron 1 of 13)	intron (NM_001005846, intron 1 of 13)	2304.0	NM_001005846	68279.0	Mm.116862	NM_026656	ENSMUSG00000011008	Mcoln2	3300002C04Rik|AI549968|C86638|TRPML2	mucolipin 2	protein-coding	0.874836389662988	0.966729232488209	0.938181341819972	0.915179156108012	2.43849486181767	2.25146187865596	2.52446485717694	2.08710326550269	5.70684493189873	1.84318989161562e-05	0.000760823130261614
Merged-chr10-46108973-4	chr10	46108860	46109060	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-135788.0	NR_028274	100302593.0		NR_028274	ENSMUSG00000095118	Snord14d	Gm23710	small nucleolar RNA, C/D box 14D	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-36747366-2	chr16	36747266	36747466	+	747.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37596.0	NM_001145899	57738.0	Mm.281804	NM_021301	ENSMUSG00000022899	Slc15a2	8430408C16Rik|C78862|Pept2	solute carrier family 15 (H+/peptide transporter), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-156860021-2	chr1	156859917	156860117	+	904.875	f0_balb.idr|f1_balb.idr	intron (NM_028333, intron 4 of 4)	intron (NM_028333, intron 4 of 4)	20994.0	NM_028333	72713.0	Mm.389206	NM_028333	ENSMUSG00000033544	Angptl1	2810039D03Rik|ANG3|ANGPT3|ANGY|ARP1	angiopoietin-like 1	protein-coding	3.6041795224706	2.22210981966282	4.42060478717592	4.05044378072339	4.38104357221556	3.75085194194453	3.93959459013621	4.75533925260491	0.64251762721696	0.243509281063488	0.740751247850617
Merged-chr7-45742055-3	chr7	45741914	45742114	+	718.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360784, intron 1 of 5)	polypyrimidine|Low_complexity|Low_complexity	464.0	NM_001360784	54200.0	Mm.271634	NM_017465	ENSMUSG00000003271	Sult2b1	AI326997|BB173635|ST2B1|SULT2B	sulfotransferase family, cytosolic, 2B, member 1	protein-coding	1.91114369643126	2.51289992057076	1.44261958163837	1.81820230715846	0.965930452607032	1.29443173203324	1.2561398746144	1.70653026177185	-2.04747074934308	0.0750703678259019	0.415449387995928
Merged-chr10-99393775-1	chr10	99393675	99393875	+	591.0	f0_balb.idr	Intergenic	Intergenic	130544.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-12796267-4	chr19	12796162	12796362	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_024093)	promoter-TSS (NR_024093)	69.0	NM_001361971	107321.0	Mm.313136	NM_134152	ENSMUSG00000024696	Lpxn	4933402K05Rik|A530083L21Rik|AV278559|LDPL	leupaxin	protein-coding	4.79175955653337	4.14136103792445	4.73296970122542	4.37800308402366	4.69537334624631	5.11415073873872	4.58084215480207	4.3993147699866	0.218079227693892	0.558573096338889	0.960321604678676
Merged-chr5-125412699-2	chr5	125412599	125412799	+	685.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19A|LTR|ERVK	21349.0	NM_203319	208144.0	Mm.296385	NM_203319	ENSMUSG00000029480	Dhx37	Gm1050|Gm451|mKIAA1517	DEAH (Asp-Glu-Ala-His) box polypeptide 37	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-22730580-2	chr10	22730480	22730680	+	747.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011603, intron 1 of 6)	intron (NM_011603, intron 1 of 6)	867.0	NM_011603	237336.0	Mm.86670	NM_011603	ENSMUSG00000071359	Tbpl1	4732475G08|AW011832|AW491032|D18347|STD|TLF|TRF2|TRP|Tlp	TATA box binding protein-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-58616899-4	chr15	58616800	58617000	+	998.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	201432.0	NM_145959	210998.0	Mm.3224	NM_145959	ENSMUSG00000037119	Fam91a1	AV220772|BC033609|D15Ertd621e|SKIN|mKIAA0493	family with sequence similarity 91, member A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-42528353-4	chr13	42528246	42528446	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-152453.0	NM_001302635	218194.0	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139483121-2	chr5	139483021	139483221	+	860.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159908, intron 1 of 6)	intron (NM_001159908, intron 1 of 6)	1370.0	NM_133349	100494.0	Mm.24521	NM_133349	ENSMUSG00000053581	Zfand2a	AA407930|AU016206|Airap	zinc finger, AN1-type domain 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132564961-2	chr4	132564861	132565061	+	774.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081211, intron 1 of 1)	B1F|SINE|Alu	894.0	NM_001081211	19204.0	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-97002482-3	chr5	97002395	97002595	+	916.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080708, intron 1 of 15)	intron (NM_080708, intron 1 of 15)	4806.0	NM_080708	140780.0	Mm.281490	NM_080708	ENSMUSG00000034663	Bmp2k	4933417M22Rik|AA673486|AV128808|BIKE	BMP2 inducible kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-79444878-2	chr12	79444778	79444978	+	697.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	147527.0	NM_001252562	19363.0	Mm.341756	NM_009014	ENSMUSG00000059060	Rad51b	AI553500|R51H2|Rad51l1|mREC2	RAD51 paralog B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53111930-4	chr4	53111820	53112020	+	994.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 5 of 49)	intron (NM_013454, intron 5 of 49)	47975.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-61139488-2	chr1	61139388	61139588	+	916.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	161574.0	NM_017480	54167.0	Mm.42044	NM_017480	ENSMUSG00000026009	Icos	AILIM|CCLP|CRP-1|H4|Ly115	inducible T cell co-stimulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-102988717-4	chr9	102988577	102988777	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19812.0	NM_033314	24059.0	Mm.207106	NM_033314	ENSMUSG00000032548	Slco2a1	2310021C19Rik|Pgt|Slc21a2|mPgt	solute carrier organic anion transporter family, member 2a1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122049330-2	chr5	122049230	122049430	+	762.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001312908, intron 1 of 22)	intron (NM_001312908, intron 1 of 22)	521.0	NM_001312908	13048.0	Mm.156172	NM_007804	ENSMUSG00000042589	Cux2	1700051K22Rik|Cutl2|Cux-2	cut-like homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129599158-6	chr2	129598949	129599149	+	735.233337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355160, intron 1 of 7)	intron (NM_001355160, intron 1 of 7)	3587.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	0.422727610234881	0.826394615129335	1.04514838208514	0.43391009462432	1.12083610027241	0.451163027641681	1.16413792565864	0.435081395864134	0.680990587600046	0.704720932576749	1
Merged-chr2-22781628-4	chr2	22781526	22781726	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019456, intron 1 of 13)	L1_Mus4|LINE|L1	7299.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-34783472-4	chr2	34783351	34783551	+	989.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145522, intron 6 of 7)	intron (NM_145522, intron 6 of 7)	11361.0	NM_022310	14828.0	Mm.330160	NM_022310	ENSMUSG00000026864	Hspa5	AL022860|AU019543|Bip|D2Wsu141e|D2Wsu17e|Grp78|Hsce70|SEZ-7|Sez7|baffled|mBiP	heat shock protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-43569869-4	chr11	43569763	43569963	+	938.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045530, intron 3 of 5)	intron (NM_001045530, intron 3 of 5)	31699.0	NM_008375	16204.0	Mm.142716	NM_008375	ENSMUSG00000020405	Fabp6	GT|I-15P|I-BABP|ILBP|ILBP3|Illbp	fatty acid binding protein 6, ileal (gastrotropin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-41085374-3	chr9	41085282	41085482	+	897.944458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176860, intron 1 of 13)	intron (NM_176860, intron 1 of 13)	-5876.0	NM_001357412	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	2.2597325032517	3.08354168337058	2.8929268504292	2.61790454481794	2.50252164088287	2.05026892079622	1.76007888732432	3.37953258653064	-0.283527116571444	0.727065490916188	0.998431161219273
Merged-chr9-119093168-2	chr9	119093068	119093268	+	798.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019676, intron 1 of 14)	intron (NM_019676, intron 1 of 14)	334.0	NR_121571	18799.0	Mm.23963	NM_019676	ENSMUSG00000010660	Plcd1	AW212592|C79986	phospholipase C, delta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70721667-1	chr8	70721567	70721767	+	1000.0	f1_c57bl6.idr	intron (NM_001195253, intron 2 of 3)	ZP3AR|Satellite|Satellite	-2397.0	NM_001310465	110385.0	Mm.255180	NM_201607	ENSMUSG00000031842	Pde4c	Dpde1|E130301F19Rik|dunce	phosphodiesterase 4C, cAMP specific	protein-coding	1.18961270536095	0.599317279356935	0.588833519317088	0.764828128334209	0.997086495593911	1.28095901886603	0.591156057915716	1.46374904424253	1.45580878916735	0.35747294790692	0.8541477221828
Merged-chr14-106607241-2	chr14	106607141	106607341	+	664.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-120721.0	NR_045938	73631.0	Mm.48862	NR_045938	ENSMUSG00000099794	1700128A07Rik	-	RIKEN cDNA 1700128A07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141546613-4	chr4	141546533	141546733	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_030695, exon 1 of 1)	non-coding (NR_030695, exon 1 of 1)	471.0	NR_030695	320456.0	Mm.32859	NM_177163		B330016D10Rik	-	RIKEN cDNA B330016D10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-34410048-4	chr1	34409951	34410151	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23148.0	NR_039562	100628580.0		NR_039562	ENSMUSG00000092852	Mir5103	mir-5103|mmu-mir-5103|mu-mir-5103	microRNA 5103	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-71834921-4	chr9	71834808	71835008	+	634.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	61188.0	NM_001253864	21406.0	Mm.171615	NM_011544	ENSMUSG00000032228	Tcf12	A130037E08Rik|ALF1|HEB|HEBAlt|HTF-4|HTF4|ME1|REB|bHLHb20	transcription factor 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-142903055-4	chr2	142902952	142903152	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_131921)	promoter-TSS (NR_131921)	87.0	NR_131921	75053.0	Mm.72638	NR_131921	ENSMUSG00000086504	Kif16bos	4930511F01Rik	kinesin family member 16B, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44930378-1	chr7	44930278	44930478	+	682.0	f1_balb.idr	promoter-TSS (NM_007458)	promoter-TSS (NM_007458)	-888.0	NM_001077264	11771.0	Mm.6877	NM_007458	ENSMUSG00000060279	Ap2a1	Adtaa	adaptor-related protein complex 2, alpha 1 subunit	protein-coding	-1.06749048699405	-1.18409811726534	-1.19455639931541	-1.20314714357788	-0.732344966823593	-1.18183176391733	-1.19218887349829	-1.20160940446224	1.4740915481595	0.659875114534777	1
Merged-chr12-111428312-2	chr12	111428212	111428412	+	893.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289487, intron 10 of 13)	intron (NM_001289487, intron 10 of 13)	10867.0	NM_001289488	74190.0	Mm.248640	NM_028807	ENSMUSG00000021280	Exoc3l4	1200009I06Rik|1600013K19Rik	exocyst complex component 3-like 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-35302324-2	chr13	35302224	35302424	+	864.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M5|LINE|L1	-90276.0	NR_126478	75543.0	Mm.489052	NR_126478	ENSMUSG00000113770	1700019C18Rik	-	RIKEN cDNA 1700019C18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-112257879-1	chr7	112257779	112257979	+	580.0	f1_c57bl6.idr	intron (NM_001193305, intron 2 of 25)	ORR1E|LTR|ERVL-MaLR	32043.0	NM_001193305	320878.0	Mm.52312	NM_177282	ENSMUSG00000038244	Mical2	5330438E18Rik|9530064J02|MICAL-2|mKIAA0750	microtubule associated monooxygenase, calponin and LIM domain containing 2	protein-coding	-0.551420657415748	-0.538711406277857	-0.542865720015577	-0.546077153722024	-0.149083059645637	0.224875528462801	-0.541948672128187	-0.545515727175258	3.55593588242333	0.186893430861633	1
Merged-chr9-20896517-1	chr9	20896417	20896617	+	557.0	f1_balb.idr	intron (NM_016876, intron 5 of 10)	intron (NM_016876, intron 5 of 10)	2073.0	NM_016876	53356.0	Mm.427309	NM_016876	ENSMUSG00000070319	Eif3g	44kDa|D0Jmb4|Eif3s4|TU-189B2|eIF3-p44|p44	eukaryotic translation initiation factor 3, subunit G	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-117289842-4	chr13	117289670	117289870	+	839.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	69197.0	NM_010330	13723.0	Mm.274926	NM_010330	ENSMUSG00000021728	Emb	AL022799|Gp70	embigin	protein-coding	3.61473973537437	4.63096704254471	3.0091418767052	3.8028708972953	2.88888289532931	2.31472160928822	2.90802041270633	3.334105601454	-1.50440993087029	0.0146998012870653	0.143078595869829
Merged-chr1-173765999-2	chr1	173765897	173766097	+	814.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_008329, intron 1 of 8)	B1_Mur2|SINE|Alu	922.0	NM_008329	15951.0	Mm.261270	NM_008329	ENSMUSG00000073489	Ifi204	Ifi16|p204	interferon activated gene 204	protein-coding	-1.32440223303897	-1.29339468673833	-0.717877708899544	-1.31276353204239	-1.32392690786997	-1.29109028300231	-1.30162128075409	-1.31119997543009	-2.49510383040271	0.470258445164311	1
Merged-chr13-103780496-2	chr13	103780396	103780596	+	825.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR41|LTR|ERVL	-5888.0	NM_001361085	218543.0	Mm.458176	NM_172592	ENSMUSG00000032621	Srek1	8430401B01|AI450757|AI462342|SRrp508|SRrp86|Sfrs12|Srsf12	splicing regulatory glutamine/lysine-rich protein 1	protein-coding	1.32194728448677	1.21548612967932	0.791773089507696	1.92829573636458	1.09128253562915	1.22487220745216	0.794845903571715	1.41062392764755	-0.926262206275485	0.494316754638797	0.935679785535167
Merged-chr13-20125196-4	chr13	20125077	20125277	+	797.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	34670.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	0.958446900328527	1.9569396422967	1.4461775351835	2.35765403950394	1.73945350021093	1.03537951422981	1.25752863638753	2.22115069669966	-0.386055504219692	0.751763784443365	0.998431161219273
Merged-chr4-140982407-2	chr4	140982307	140982507	+	701.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4466.0	NM_029097	74772.0	Mm.205625	NM_029097	ENSMUSG00000036622	Atp13a2	1110012E06Rik|AA589443	ATPase type 13A2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-43784040-2	chr13	43783940	43784140	+	847.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1072.0	NM_009856	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-136118646-4	chr4	136118540	136118740	+	896.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25182.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	3.26788939669366	3.49254236173714	2.74696471749629	3.01669258659422	3.42476012131804	3.33628926908541	2.9007395294798	3.70905433314085	0.360396924229689	0.541148633013353	0.954866069207078
Merged-chr10-19033859-4	chr10	19033774	19033974	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-18464.0	NM_009397	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-59950890-3	chr10	59950758	59950958	+	795.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029083, exon 3 of 3)	exon (NM_029083, exon 3 of 3)	912.0	NM_029083	74747.0	Mm.21697	NM_029083	ENSMUSG00000020108	Ddit4	5830413E08Rik|AA415483|REDD1|Rtp801|dig2	DNA-damage-inducible transcript 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-96531554-2	chr9	96531454	96531654	+	730.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52879.0	NM_001311135	19823.0	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-87653922-2	chr1	87653822	87654022	+	680.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110192, intron 2 of 26)	intron (NM_001110192, intron 2 of 26)	33610.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-24389499-4	chr5	24389405	24389605	+	938.741699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001002897, intron 5 of 13)	intron (NM_001002897, intron 5 of 13)	2638.0	NM_001002897	213948.0	Mm.332252	NM_001002897	ENSMUSG00000038295	Atg9b	Apg912|Apg9l2|Apgdc2|Gm574|Nos3as|eONE|sONE	autophagy related 9B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-19347471-4	chr2	19347361	19347561	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_126563, intron 1 of 3)	intron (NR_126563, intron 1 of 3)	3144.0	NR_126563	108871.0	Mm.107666	NR_126563		4930447M23Rik	-	RIKEN cDNA 4930447M23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-29012057-2	chr17	29011957	29012157	+	790.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4062.0	NM_001357173	106504.0	Mm.439986	NM_134115	ENSMUSG00000024006	Stk38	5830476G13Rik|9530097A09Rik|AA617404|Ndr1	serine/threonine kinase 38	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-73641737-2	chr15	73641637	73641837	+	561.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-16993.0	NM_001033219	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-31291600-2	chr2	31291500	31291700	+	554.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_019681, intron 7 of 7)	intron (NM_019681, intron 7 of 7)	45677.0	NM_019681	14299.0	Mm.249318	NM_019681	ENSMUSG00000062661	Ncs1	9430075O15Rik|A730032G13Rik|AI836659|Freq|Mfreq|NCS-1	neuronal calcium sensor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-78749472-4	chr12	78749300	78749500	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019579, intron 1 of 14)	CpG	453.0	NM_019579	56217.0	Mm.425777	NM_019579	ENSMUSG00000021112	Mpp5	3830420B02Rik|AI255216|AI644496|Pals1	membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-99028915-4	chr6	99028796	99028996	+	878.6375119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001197322)	promoter-TSS (NM_001197322)	-598.0	NM_001197322	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-113645750-2	chr9	113645650	113645850	+	775.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58598.0	NR_040760	102688.0	Mm.394901	NR_040760	ENSMUSG00000109890	AU023762	-	expressed sequence AU023762	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85601112-4	chr12	85601008	85601208	+	989.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205053, intron 1 of 3)	intron (NM_001205053, intron 1 of 3)	1090.0	NM_001205053	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-100439687-2	chr3	100439587	100439787	+	546.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13282.0	NR_040543	73806.0	Mm.396549	NR_040543	ENSMUSG00000086923	4930406D18Rik	-	RIKEN cDNA 4930406D18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-125463051-4	chr1	125462889	125463089	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-27262.0	NM_001205385	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100854717-2	chr7	100854617	100854817	+	813.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177073, intron 1 of 10)	intron (NM_177073, intron 1 of 10)	8696.0	NM_001358914	320100.0	Mm.40336	NM_177073	ENSMUSG00000008318	Relt	E430021K24Rik|Tnfrsf19l	RELT tumor necrosis factor receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-71279594-4	chr6	71279490	71279690	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145568, intron 1 of 3)	intron (NM_145568, intron 1 of 3)	7571.0	NM_145568	57896.0	Mm.250569	NM_145568	ENSMUSG00000053012	Krcc1	AA792894	lysine-rich coiled-coil 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-133111891-3	chr3	133111811	133112011	+	758.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_027927)	TTS (NM_027927)	-19872.0	NM_001356309	67553.0	Mm.304899	NM_026231	ENSMUSG00000028018	Gstcd	4933434L15Rik	glutathione S-transferase, C-terminal domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-93600840-2	chr2	93600740	93600940	+	584.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41594.0	NM_007442	11695.0	Mm.389389	NM_007442	ENSMUSG00000040310	Alx4	lst	aristaless-like homeobox 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-121225127-4	chr6	121225013	121225213	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017379, intron 4 of 4)	intron (NM_017379, intron 4 of 4)	14379.0	NM_017379	53857.0	Mm.32884	NM_017379	ENSMUSG00000030137	Tuba8	-	tubulin, alpha 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-24261280-4	chr5	24261164	24261364	+	763.733337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3736.0	NR_030454	735274.0		NR_030454	ENSMUSG00000106252	Mir684-1	Mirn684-1	microRNA 684-1	ncRNA	3.08116869828956	4.05407907053383	2.62349753035142	2.67494902124308	3.10676263114298	2.9997488823736	2.12921301002236	2.912702265917	-0.698255197671529	0.3202974142248	0.822777175850409
Merged-chr7-19922157-3	chr7	19922066	19922266	+	689.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1023.0	NM_027514	52118.0	Mm.227506	NM_027514	ENSMUSG00000040511	Pvr	3830421F03Rik|CD155|D7Ertd458e|HVED|PVS|Taa1|Tage4|mE4|necl-5	poliovirus receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-52064584-3	chr11	52064473	52064673	+	623.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166654, intron 13 of 13)	B3|SINE|B2	-34251.0	NM_019411	19052.0	Mm.260288	NM_019411	ENSMUSG00000020349	Ppp2ca	PP2A|R75353	protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117810002-1	chr10	117809902	117810102	+	595.0	f0_balb.idr	Intergenic	Intergenic	-17297.0	NM_134010	103468.0	Mm.12568	NM_134010	ENSMUSG00000052798	Nup107	AW541137|C76801	nucleoporin 107	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5321763-2	chr17	5321663	5321863	+	626.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 13 of 19)	intron (NM_001085355, intron 13 of 19)	97004.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-22301064-4	chr10	22300872	22301072	+	691.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009018, intron 6 of 6)	MTC-int|LTR|ERVL-MaLR	-5748.0	NR_015465	606736.0	Mm.387042	NR_015465	ENSMUSG00000097352	C920009B18Rik	-	RIKEN cDNA C920009B18 gene	ncRNA	1.18370384467949	1.80312215318892	0.621647773821519	0.610643889440511	1.39883361196016	1.38782822494093	0.62475755320686	0.612580669742372	-0.359905908588456	0.823350176004491	0.998431161219273
Merged-chr11-62555539-1	chr11	62555439	62555639	+	773.0	f0_balb.idr	Intergenic	Intergenic	3808.0	NM_001313984	22187.0	Mm.371592	NM_011664	ENSMUSG00000019505	Ubb	AL033289|Rps27a|Uba52|Ubb2|Ubc	ubiquitin B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-50617202-5	chr9	50617092	50617292	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028300)	promoter-TSS (NM_028300)	-129.0	NM_028300	72614.0	Mm.147232	NM_028300	ENSMUSG00000000167	Pih1d2	2700059L22Rik	PIH1 domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133680377-3	chr4	133680295	133680495	+	700.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001080819, exon 20 of 20)	exon (NM_001080819, exon 20 of 20)	-7229.0	NM_001356466	230801.0	Mm.217004	NM_178698	ENSMUSG00000043257	Pigv	B330013B03|D430024F16Rik	phosphatidylinositol glycan anchor biosynthesis, class V	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-65667730-2	chr3	65667614	65667814	+	911.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037923, intron 1 of 2)	intron (NM_001037923, intron 1 of 2)	1486.0	NM_001166659	624866.0	Mm.296317	NM_001037923	ENSMUSG00000074579	Lekr1	EG546798|EG624866|Gm6534	leucine, glutamate and lysine rich 1	protein-coding	-0.54341485374287	-0.89742595136803	-0.905016171108014	-0.907153240756156	-0.910163754634862	-0.894797809717363	-0.448600745209986	-0.906780294735573	0.400252185036517	0.89827482116786	1
Merged-chr18-61110476-2	chr18	61110376	61110576	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001037859, exon 4 of 22)	exon (NM_001037859, exon 4 of 22)	4904.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99887510-4	chr7	99887387	99887587	+	863.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164258, intron 8 of 18)	intron (NM_001164258, intron 8 of 18)	28269.0	NM_001164258	446101.0	Mm.440757	NM_001164258	ENSMUSG00000035211	Xrra1	AI449753	X-ray radiation resistance associated 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70781399-1	chr8	70781299	70781499	+	654.0	f1_balb.idr	intron (NM_199308, intron 21 of 25)	intron (NM_199308, intron 21 of 25)	4537.0	NR_029440	72093.0	Mm.271208	NR_029440		2010320M18Rik	-	RIKEN cDNA 2010320M18 gene	ncRNA	0.854938072412449	1.20853237386051	0.675408214128049	1.56651365876074	1.47748849013436	2.59388311911791	0.680364215730821	0.660829682675744	1.49018030281064	0.28924823788838	0.794869527756478
Merged-chr1-174469873-2	chr1	174469773	174469973	+	783.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15-int|LTR|ERVL	21248.0	NM_207694	546747.0	Mm.380253	NM_207694	ENSMUSG00000066671	Olfr220	EG546747|MOR103-13P|MOR103-17|Olfr220-ps1|Olfr413-ps1	olfactory receptor 220	protein-coding	1.05469180745294	1.58261360303813	1.14163441747564	1.65192034106333	1.0629834940053	0.790037470965919	0.777668031936143	1.37203773920703	-1.51338727709074	0.270483341285481	0.773417332874928
Merged-chr19-11824575-2	chr19	11824475	11824675	+	689.25	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	4449.0	NM_146936	258938.0	Mm.451671	NM_146936	ENSMUSG00000048292	Olfr1417	MOR266-2	olfactory receptor 1417	protein-coding	2.84047773323853	1.50372839617067	2.83617772975206	1.88481393000727	2.4575688334697	2.75544362547639	2.76524457027301	2.77106021072675	0.571149784741985	0.495346846179278	0.935903410809185
Merged-chr18-37335886-1	chr18	37335786	37335986	+	643.0	f1_balb.idr	exon (NM_053131, exon 1 of 1)	exon (NM_053131, exon 1 of 1)	1858.0	NM_053131	93877.0	Mm.59009	NM_053131	ENSMUSG00000051678	Pcdhb6	Pcdhb5B|PcdhbF	protocadherin beta 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-7828922-4	chr9	7828797	7828997	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007465, intron 2 of 7)	RLTR24B_MM|LTR|ERV1	7909.0	NM_001291503	11797.0	Mm.335659	NM_007465	ENSMUSG00000057367	Birc2	AW146227|Api1|Api2|Birc3|C-IAP1|C330006D17Rik|HIAP1|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF48|cIAP1|cIAP2|mcIAP1	baculoviral IAP repeat-containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76900304-2	chr15	76900204	76900404	+	865.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025536, intron 1 of 1)	intron (NM_025536, intron 1 of 1)	363.0	NM_025536	66398.0	Mm.291716	NM_025536	ENSMUSG00000055041	Commd5	2310065H03Rik|AI854466|D15Ertd81e|Hcarg	COMM domain containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-34866895-2	chr6	34866795	34866995	+	581.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_197986, intron 1 of 1)	B4|SINE|B4	3749.0	NM_197986	68487.0	Mm.248440	NM_197986	ENSMUSG00000057137	Tmem140	1110007F12Rik	transmembrane protein 140	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-120872583-3	chr4	120872490	120872690	+	849.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_182929, exon 2 of 8)	5' UTR (NM_182929, exon 2 of 8)	17791.0	NM_182929	242662.0	Mm.192502	NM_182929	ENSMUSG00000032890	Rims3	A730060M23Rik|Nim3|Rim3|mKIAA0237	regulating synaptic membrane exocytosis 3	protein-coding	2.38888943388891	2.38715595062871	1.92519175929594	1.30745973956332	2.32871819542068	2.1531749534549	2.08380868847586	2.25467000535911	0.314406679113304	0.738150570512289	0.998431161219273
Merged-chr4-63582852-2	chr4	63582752	63582952	+	543.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144905, intron 9 of 9)	intron (NM_144905, intron 9 of 9)	17912.0	NM_001354647	670833.0	Mm.32213	NM_001354647	ENSMUSG00000084782	Gm11213	-	predicted gene 11213	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-46592286-4	chr4	46592153	46592353	+	819.041626	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164804, intron 1 of 11)	intron (NM_001164804, intron 1 of 11)	9676.0	NM_001164804	107684.0	Mm.416311	NM_178893	ENSMUSG00000028337	Coro2a	9030208C03Rik|AI563590|IR10	coronin, actin binding protein 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191272952-3	chr1	191272886	191273086	+	731.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45132.0	NM_025424	66208.0	Mm.46444	NM_025424	ENSMUSG00000037499	Nenf	1110060M21Rik|SCIRP10|Spuf	neuron derived neurotrophic factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-5045526-2	chr6	5045426	5045626	+	626.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_181595, intron 2 of 15)	B4A|SINE|B4	142206.0	NM_181595	243725.0	Mm.332901	NM_181595	ENSMUSG00000032827	Ppp1r9a	2810430P21Rik|4930518N04Rik|5330407E15|A230094E16Rik|BB181831|NRB|mKIAA1222|neurabin-I	protein phosphatase 1, regulatory (inhibitor) subunit 9A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-106557192-2	chr7	106557096	106557296	+	645.75	f0_balb.idr|f1_balb.idr	Intergenic	Lx9|LINE|L1	87449.0	NM_001277179	434223.0	Mm.276443	NM_001277179		Gm1966	-	predicted gene 1966	protein-coding	0.664677824229055	0.500966210886976	0.482813939590001	0.468327040162952	1.72363587479326	0.504966969871035	2.2050311151924	0.92164110588447	4.40423710062872	0.00713879520101262	0.0859952458049692
Merged-chr7-67431238-4	chr7	67431150	67431350	+	815.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58392.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	-2.18308165884198	-2.15547475440471	-2.16382331017202	-2.1706810624505	-2.18114370519566	-2.15366558754311	-2.03057248461154	-2.16945352807143	0.759018020146679	0.829933115115583	1
Merged-chr12-71139577-2	chr12	71139477	71139677	+	736.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163378, intron 1 of 29)	B2_Mm2|SINE|B2	2729.0	NM_001163378	76967.0	Mm.87290	NM_029818	ENSMUSG00000034601	2700049A03Rik	Ta3|Talpid3|mKIAA0586	RIKEN cDNA 2700049A03 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96501995-2	chr3	96501895	96502095	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23190.0	NM_027126	69585.0	Mm.171314	NM_027126	ENSMUSG00000038403	Hfe2	2310035L15Rik|5230400G09Rik|AI414844|AI789733|DL-M|HJV|Rgmc|hemojuvelin	hemochromatosis type 2 (juvenile)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-57483065-4	chr16	57482998	57483198	+	983.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	-66144.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-90229101-2	chr11	90229001	90229201	+	612.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-20375.0	NM_026178	67468.0	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27737596-2	chr2	27737496	27737696	+	614.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290481, intron 2 of 9)	intron (NM_001290481, intron 2 of 9)	27013.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-102245580-2	chr15	102245480	102245680	+	668.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_011244, intron 3 of 9)	intron (NM_011244, intron 3 of 9)	920.0	NM_001042727	19411.0	Mm.1273	NM_011244	ENSMUSG00000001288	Rarg	Nr1b3|RAR-gamma|RARD|RARgamma2	retinoic acid receptor, gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-111024412-4	chr7	111024309	111024509	+	866.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4542.0	NM_009431	22083.0	Mm.255858	NM_009431	ENSMUSG00000005609	Ctr9	AA409336|Sh2bp1|Tsbp|Tsp|mKIAA0155	CTR9 homolog, Paf1/RNA polymerase II complex component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-78697535-4	chr11	78697433	78697633	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008702)	promoter-TSS (NM_008702)	-108.0	NM_008702	18099.0	Mm.9001	NM_008702	ENSMUSG00000017376	Nlk	AI194375	nemo like kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-103338707-8	chr12	103338582	103338782	+	830.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023049, intron 2 of 9)	intron (NM_023049, intron 2 of 9)	17319.0	NM_023049	65256.0	Mm.27159	NM_023049	ENSMUSG00000021200	Asb2	1110008E15Rik	ankyrin repeat and SOCS box-containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99380581-2	chr15	99380481	99380681	+	757.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-10099.0	NM_001310622	22379.0	Mm.29043	NM_011711	ENSMUSG00000023008	Fmnl3	2700073B04Rik|FBP11|Wbp3|mKIAA2014	formin-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-59246770-2	chr2	59246670	59246870	+	692.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 2 of 20)	Lx9|LINE|L1	85920.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119925410-4	chr11	119925316	119925516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_039557, intron 2 of 2)	intron (NR_039557, intron 2 of 2)	11606.0	NM_001085498	208092.0	Mm.306673	NM_001085498	ENSMUSG00000025371	Chmp6	2400004G01Rik	charged multivesicular body protein 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-120296316-4	chr2	120296171	120296371	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7202.0	NM_001024137	78390.0	Mm.330507	NM_001024137	ENSMUSG00000070719	Pla2g4d	2610311B01Rik|Pla2delta|cPLA2delta	phospholipase A2, group IVD	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-137485655-2	chr5	137485555	137485755	+	920.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001312875, intron 1 of 4)	intron (NM_001312875, intron 1 of 4)	161.0	NM_007942	13856.0	Mm.349116	NM_007942	ENSMUSG00000029711	Epo	-	erythropoietin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-121082430-4	chr11	121082321	121082521	+	941.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1282.0	NM_145373	209588.0	Mm.69553	NM_145373	ENSMUSG00000025165	Sectm1a	BC010462	secreted and transmembrane 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-83610080-4	chr9	83609956	83610156	+	870.0458369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61718.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	2.03088758860935	1.09684830106307	2.29650736101591	2.14760695529845	1.23076191772198	1.34901874012331	1.66544525391304	1.61422569885574	-1.53234452221161	0.171217874990597	0.638755914366425
Merged-chr7-99915783-2	chr7	99915683	99915883	+	615.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164258, intron 15 of 18)	intron (NM_001164258, intron 15 of 18)	56565.0	NM_001164258	446101.0	Mm.440757	NM_001164258	ENSMUSG00000035211	Xrra1	AI449753	X-ray radiation resistance associated 1	protein-coding	-1.8418762459921	-1.8125357239735	-1.82140854000656	-1.82869693527674	-1.56059678980999	-1.8106129477253	-1.81939992894326	-1.82739231600805	1.3620893379502	0.699511506488145	1
Merged-chr15-88828857-4	chr15	88828746	88828946	+	959.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9200.0	NM_029720	76737.0	Mm.292567	NM_029720	ENSMUSG00000023272	Creld2	5730592L21Rik|C85758	cysteine-rich with EGF-like domains 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105708211-4	chr8	105708114	105708314	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198299)	promoter-TSS (NM_198299)	-46.0	NM_198299	102124.0	Mm.276087	NM_198299	ENSMUSG00000013155	Enkd1	AI606951|E130303B06Rik	enkurin domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-65872738-4	chr15	65872627	65872827	+	904.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001356582, exon 23 of 23)	3' UTR (NM_001356582, exon 23 of 23)	39527.0	NM_001347038	18256.0	Mm.41776	NM_010953	ENSMUSG00000015001	Oc90	Ocn-95|PLA2L|Pla2ll|oc95	otoconin 90	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127212000-2	chr7	127211900	127212100	+	608.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016754, intron 1 of 6)	intron (NM_016754, intron 1 of 6)	392.0	NM_016754	17907.0	Mm.14526	NM_016754	ENSMUSG00000030672	Mylpf	2410014J02Rik|MLC-2|Mlc2	myosin light chain, phosphorylatable, fast skeletal muscle	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-4925123-4	chr7	4925029	4925229	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173008)	promoter-TSS (NM_173008)	-715.0	NM_173008	269855.0	Mm.44190	NM_173008	ENSMUSG00000035279	Ssc5d	A430110N23Rik|S5D-SRCRB	scavenger receptor cysteine rich family, 5 domains	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-53285364-2	chr10	53285264	53285464	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001204983, intron 10 of 12)	intron (NM_001204983, intron 10 of 12)	5094.0	NR_038015	100502820.0	Mm.55827	NR_038015	ENSMUSG00000112709	Gm19395	-	predicted gene, 19395	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-110190263-4	chr7	110190157	110190357	+	966.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31446.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-86464734-4	chr9	86464647	86464847	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027394, exon 1 of 10)	exon (NM_027394, exon 1 of 10)	169.0	NM_027394	70348.0	Mm.53469	NM_027394	ENSMUSG00000032415	Ube2cbp	2610018I03Rik|Ube3d	ubiquitin-conjugating enzyme E2C binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-46446678-3	chr18	46446572	46446772	+	626.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	19144.0	NR_045438	72076.0	Mm.82766	NM_028086		Mospd4	2010013H21Rik	motile sperm domain containing 4	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-87024898-2	chr11	87024798	87024998	+	632.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-31136.0	NM_001005341	77864.0	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120112797-4	chr8	120112688	120112888	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	-1364.0	NM_001163762	234797.0	Mm.101958	NM_172286	ENSMUSG00000031824	6430548M08Rik	AW049007|Kiaa0513|mKIAA0513	RIKEN cDNA 6430548M08 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-74990408-3	chr7	74990309	74990509	+	869.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39802.0	NR_131122	75205.0	Mm.399304	NR_131122	ENSMUSG00000108803	4930533N22Rik	Gm44904	RIKEN cDNA 4930533N22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-136793723-1	chr3	136793623	136793823	+	587.0	f0_balb.idr	intron (NM_008913, intron 1 of 13)	intron (NM_008913, intron 1 of 13)	123657.0	NM_001293622	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180256335-4	chr1	180256237	180256437	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001128605)	promoter-TSS (NM_001128605)	-37.0	NM_001128605	19165.0	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83742655-2	chr11	83742555	83742755	+	665.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TC)n|Simple_repeat|Simple_repeat	-4285.0	NM_183249	66107.0	Mm.902	NM_183249	ENSMUSG00000051748	Wfdc21	1100001G20Rik|Wdnm1-like	WAP four-disulfide core domain 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-113491670-1	chr2	113491570	113491770	+	580.0	f0_balb.idr	intron (NM_001285459, intron 3 of 16)	CT-rich|Low_complexity|Low_complexity	50606.0	NM_001285459	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	0.047327796405563	-0.389207122644	-0.392873289209811	-0.39569055317889	0.142480985952002	-0.388378441866701	-0.392066107062101	-0.237562658943667	0.650331519071622	0.79968701878879	1
Merged-chr6-34156245-2	chr6	34156145	34156345	+	625.333374	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_021435, exon 10 of 10)	3' UTR (NM_021435, exon 10 of 10)	20809.0	NM_021435	58246.0	Mm.245527	NM_021435	ENSMUSG00000018999	Slc35b4	4930474D06Rik|AB041549|AW494345	solute carrier family 35, member B4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-23889778-3	chr13	23889678	23889878	+	651.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_121611, intron 11 of 12)	intron (NR_121611, intron 11 of 12)	19505.0	NM_001170638	20504.0	Mm.2656	NM_009198	ENSMUSG00000021335	Slc17a1	NAPI-1|Napi1|Npt1	solute carrier family 17 (sodium phosphate), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-113645799-4	chr5	113645657	113645857	+	957.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008153, intron 1 of 2)	intron (NM_008153, intron 1 of 2)	-2154.0	NM_001359060	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-165643896-3	chr1	165643801	165644001	+	765.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9360.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-16139876-4	chr19	16139759	16139959	+	931.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008139, intron 1 of 6)	intron (NM_008139, intron 1 of 6)	7028.0	NM_008139	14682.0	Mm.439701	NM_008139	ENSMUSG00000024639	Gnaq	1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI	guanine nucleotide binding protein, alpha q polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19068991-3	chr7	19068889	19069089	+	762.483337	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031255, intron 5 of 5)	intron (NM_031255, intron 5 of 5)	-7211.0	NM_010058	13401.0	Mm.2852	NM_010058	ENSMUSG00000030410	Dmwd	DMR-N9|Dm9	dystrophia myotonica-containing WD repeat motif	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-5714901-2	chr13	5714801	5715001	+	860.083374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	143191.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-76180216-2	chr14	76180116	76180316	+	911.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	69325.0	NM_013745	27275.0	Mm.21138	NM_013745	ENSMUSG00000022009	Nufip1	Nufip	nuclear fragile X mental retardation protein interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-45831723-2	chr11	45831623	45831823	+	613.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045876, exon 2 of 4)	non-coding (NR_045876, exon 2 of 4)	-20241.0	NM_001346760	216705.0	Mm.169673	NM_001045520	ENSMUSG00000006169	Clint1	AI642036|AW537616|C530049I24Rik|Enth|Epn4|F630206G17Rik|mKIAA0171	clathrin interactor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-112618126-4	chr12	112618037	112618237	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1910.0	NM_007421	11565.0	Mm.3440	NM_007421	ENSMUSG00000011148	Adssl1	AI528595|Adss|Adss1	adenylosuccinate synthetase like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-92215435-3	chr1	92215336	92215536	+	668.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35095.0	NM_207225	208727.0	Mm.318567	NM_207225	ENSMUSG00000026313	Hdac4	4932408F19Rik|HD4	histone deacetylase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-119879381-4	chr7	119879275	119879475	+	952.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163703, intron 1 of 2)	intron (NM_001163703, intron 1 of 2)	16083.0	NM_173408	233805.0	Mm.31539	NM_173408	ENSMUSG00000048787	Dcun1d3	1700020A13Rik|BC030335	DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-51478031-1	chr17	51477931	51478131	+	764.0	f0_balb.idr	intron (NR_037268, intron 3 of 4)	intron (NR_037268, intron 3 of 4)	-29762.0	NR_046166	328837.0	Mm.236143	NR_046166		C330011F03Rik	C330011F03	RIKEN cDNA C330011F03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-49173424-2	chr14	49173324	49173524	+	668.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027492, intron 2 of 4)	intron (NM_027492, intron 2 of 4)	1178.0	NM_027492	70646.0	Mm.275688	NM_027492	ENSMUSG00000036282	Naa30	4930487N19Rik|5730533P17Rik|AI447922|AW322455|Nat12	N(alpha)-acetyltransferase 30, NatC catalytic subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-73723234-4	chr12	73723129	73723329	+	973.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008856, intron 10 of 13)	ORR1D1|LTR|ERVL-MaLR	138433.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-75887010-1	chr16	75886910	75887110	+	1000.0	f0_c57.idr	intron (NM_023380, intron 2 of 7)	intron (NM_023380, intron 2 of 7)	22256.0	NM_023380	67742.0	Mm.131406	NM_023380	ENSMUSG00000022876	Samsn1	4930571B16Rik|930571B16Rik|Hacs1|SLy2	SAM domain, SH3 domain and nuclear localization signals, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-57673729-4	chr3	57673585	57673785	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033349, intron 2 of 3)	intron (NM_001033349, intron 2 of 3)	18852.0	NM_001033349	242037.0	Mm.291091	NM_001033349	ENSMUSG00000074591	Ankub1	Gm410	ankrin repeat and ubiquitin domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-47855626-4	chr19	47855526	47855726	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010362, intron 2 of 5)	intron (NM_010362, intron 2 of 5)	653.0	NM_010362	14873.0	Mm.378931	NM_010362	ENSMUSG00000025068	Gsto1	AA407097|AI194287|AU018802|Gsto-1|Gstx|Spg-r|p28	glutathione S-transferase omega 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153109062-4	chr2	153108956	153109156	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001172117, intron 1 of 12)	intron (NM_001172117, intron 1 of 12)	588.0	NM_010407	15162.0	Mm.715	NM_010407	ENSMUSG00000003283	Hck	AI849071|Bmk	hemopoietic cell kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-51165506-4	chr14	51165455	51165655	+	775.44165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3295.0	NM_019398	54159.0	Mm.377125	NM_019398	ENSMUSG00000059606	Rnase2b	Ear5|Raf4|mR5	ribonuclease, RNase A family, 2B (liver, eosinophil-derived neurotoxin)	protein-coding	1.21715544620708	1.32847869817125	2.65942823740393	2.39628643312585	2.54642021861704	2.03067598704454	2.84495378605023	2.30222577712055	0.88262246652902	0.376988501716518	0.869940000691393
Merged-chr10-8240317-3	chr10	8240229	8240429	+	617.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177387, intron 7 of 7)	intron (NM_177387, intron 7 of 7)	278496.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-120476768-2	chr14	120476668	120476868	+	758.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1693.0	NM_029519	76108.0	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-108348666-4	chr4	108348564	108348764	+	946.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	20512.0	NM_027250	69893.0	Mm.28354	NM_027250	ENSMUSG00000048351	Coa7	2010305A19Rik|AI451324|D4Ertd796e|Selrc1	cytochrome c oxidase assembly factor 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-4509963-4	chr2	4509863	4510063	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 5 of 23)	intron (NM_001177843, intron 5 of 23)	-49791.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-114164500-4	chr7	114164453	114164653	+	979.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER5A|DNA|hAT-Charlie	-46772.0	NM_025846	66922.0	Mm.276572	NM_025846	ENSMUSG00000055723	Rras2	2610016H24Rik|C86394|TC21	related RAS viral (r-ras) oncogene 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-44181443-3	chr12	44181331	44181531	+	967.7222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28637.0	NM_013760	27362.0	Mm.27432	NM_013760	ENSMUSG00000014905	Dnajb9	AA408011|AA673251|AA673481|AW556981|ERdj4|Mdg1|mDj7	DnaJ heat shock protein family (Hsp40) member B9	protein-coding	-0.59218821906885	-0.404167751408691	-0.284587864955599	-0.588380909268403	-0.591624016859405	-0.399950631458139	-0.2778711837023	-0.587978272755536	0.0402502350073351	0.987384701353673	1
Merged-chr10-61267582-4	chr10	61267471	61267671	+	960.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081127, intron 2 of 21)	intron (NM_001081127, intron 2 of 21)	5867.0	NM_001081127	237360.0	Mm.333252	NM_001081127	ENSMUSG00000059901	Adamts14	Adamts-14|TS14	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-69732673-4	chr14	69732554	69732754	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134078)	promoter-TSS (NM_134078)	-84.0	NM_134078	105513.0	Mm.159637	NM_134078	ENSMUSG00000034190	Chmp7	4930596K11Rik|6330407G04Rik|AI450338|AW550775	charged multivesicular body protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-69331359-4	chr12	69331253	69331453	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025441, intron 17 of 32)	B3|SINE|B2	25823.0	NM_025441	66244.0	Mm.46705	NM_025441	ENSMUSG00000020982	Nemf	1500011I12Rik|4933405E14Rik|Sdccag1	nuclear export mediator factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4115485-2	chr19	4115385	4115585	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001276284, exon 4 of 6)	exon (NM_001276284, exon 4 of 6)	6090.0	NM_001276284	11632.0	Mm.10433	NM_016666	ENSMUSG00000024847	Aip	AA408703|AW476050|Ara9|D19Bwg1412e|Fkbp16|Xap2	aryl-hydrocarbon receptor-interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95890619-1	chr3	95890519	95890719	+	567.0	f1_balb.idr	intron (NM_153513, intron 1 of 5)	MIR3|SINE|MIR	1386.0	NM_153513	229600.0	Mm.89556	NM_153513	ENSMUSG00000038543	BC028528	L259	cDNA sequence BC028528	protein-coding	0.0523697770481789	-0.428811826791536	-0.433299050502267	-0.436768773069496	-0.441683705684453	0.335488343819779	-0.432308400300749	-0.436162129993693	0.886934096145362	0.741891276913931	1
Merged-chr11-84794666-2	chr11	84794566	84794766	+	764.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24849.0	NM_145433	217038.0	Mm.280825	NM_145433	ENSMUSG00000018405	Mrm1	A530065E19Rik	mitochondrial rRNA methyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-4566413-2	chr2	4566313	4566513	+	722.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177844, intron 2 of 11)	intron (NM_001177844, intron 2 of 11)	6659.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-146888449-4	chr6	146888357	146888557	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001170433)	promoter-TSS (NM_001170433)	-37.0	NM_001355728	67533.0	Mm.103382	NM_026221	ENSMUSG00000016487	Ppfibp1	4632409B19Rik|AW214454|AW261454	PTPRF interacting protein, binding protein 1 (liprin beta 1)	protein-coding	4.46844496065675	3.78742572203649	5.03154438696074	4.94221924739593	4.3326282996299	4.55694119514667	4.95861722005124	4.44168599610111	-0.068087840373531	0.86481622138539	0.998431161219273
Merged-chr16-3885638-4	chr16	3885481	3885681	+	868.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290689, intron 1 of 5)	intron (NM_001290689, intron 1 of 5)	962.0	NM_001290689	74763.0	Mm.28403	NM_029090	ENSMUSG00000005982	Naa60	1200013P24Rik|AI315146|HAT4|Nat15|NatF	N(alpha)-acetyltransferase 60, NatF catalytic subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-14677131-2	chr2	14677031	14677231	+	628.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_023116, intron 2 of 13)	intron (NM_023116, intron 2 of 13)	-43511.0	NR_028497	625342.0	Mm.484784	NR_028497		Gm13315	-	lactate dehydrogenase A pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-23772599-2	chr11	23772499	23772699	+	917.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1629.0	NM_009044	19696.0	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-60098283-4	chr1	60098196	60098396	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199061)	promoter-TSS (NM_001199061)	49.0	NM_001285463	241066.0	Mm.276441	NM_139150	ENSMUSG00000026017	Carf	Als2cr8|ECBRC-FC1|ECBRC-FC2	calcium response factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-144550813-3	chr2	144550711	144550911	+	961.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015754)	promoter-TSS (NM_015754)	48.0	NM_015754	26450.0	Mm.440564	NM_015754	ENSMUSG00000027428	Rbbp9	Bog	retinoblastoma binding protein 9, serine hydrolase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-30857225-1	chr3	30857125	30857325	+	549.0	f1_c57bl6.idr	intron (NM_001286994, intron 1 of 3)	intron (NM_001286994, intron 1 of 3)	1275.0	NM_001286994	71862.0	Mm.272019	NM_027965	ENSMUSG00000037661	Gpr160	1700025D19Rik|GPCR150	G protein-coupled receptor 160	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-35854577-2	chr18	35854477	35854677	+	615.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357459)	promoter-TSS (NM_001357459)	-110.0	NM_001357459	67393.0	Mm.94560	NM_133687	ENSMUSG00000046668	Cxxc5	4930415K17Rik	CXXC finger 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-134124235-7	chr4	134124113	134124313	+	864.914307	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045571, intron 10 of 13)	intron (NR_045571, intron 10 of 13)	4540.0	NM_080559	73723.0	Mm.22240	NM_080559	ENSMUSG00000028843	Sh3bgrl3	1110004L05Rik|AU022188	SH3 domain binding glutamic acid-rich protein-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-112361822-4	chr13	112361712	112361912	+	986.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168403, intron 8 of 11)	L1MD3|LINE|L1	73294.0	NM_001168404	77318.0	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	3.00503940535562	1.63758415970285	2.65307518407364	1.7546596362657	2.35815646857537	1.35509355305127	3.39597404742943	2.10851883601632	0.249166750506004	0.795542323575748	0.998431161219273
Merged-chr6-136499347-4	chr6	136499219	136499419	+	815.583313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	-19532.0	NM_019426	54343.0	Mm.173271	NM_019426	ENSMUSG00000030213	Atf7ip	2610204M12Rik|AM|Mcaf1	activating transcription factor 7 interacting protein	protein-coding	1.40394565801711	1.72531721555211	1.43075889025577	0.733242382168551	0.902622493958572	0.763143285908094	0.748262013524921	1.78510491784011	-0.811235675082464	0.579057750196423	0.965985075107763
Merged-chr12-59010844-2	chr12	59010744	59010944	+	845.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009147, intron 1 of 19)	(TG)n|Simple_repeat|Simple_repeat	1173.0	NM_009147	20334.0	Mm.491137	NM_009147	ENSMUSG00000020986	Sec23a	Msec23|Sec23r	SEC23 homolog A, COPII coat complex component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-130221783-2	chr5	130221683	130221883	+	945.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027854)	promoter-TSS (NM_027854)	-552.0	NM_027854	71667.0	Mm.258508	NM_027854	ENSMUSG00000053094	Tmem248	0610007L01Rik|A930023A16Rik|AW557951|G430067H08Rik	transmembrane protein 248	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24752965-3	chr17	24752884	24753084	+	628.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357340)	promoter-TSS (NM_001357340)	-4.0	NM_001357342	328779.0	Mm.328848	NM_001012402	ENSMUSG00000039628	Hs3st6	3-OST-6	heparan sulfate (glucosamine) 3-O-sulfotransferase 6	protein-coding	2.54403964428779	2.35893672123862	3.5339916275853	2.472203718671	1.95963765419697	1.48293037463298	2.68269051415433	2.96082683748359	-0.818790592205401	0.335656678009679	0.836089117450301
Merged-chr1-140257908-4	chr1	140257802	140258002	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081027, intron 1 of 27)	intron (NM_001081027, intron 1 of 27)	11645.0	NM_001081027	240776.0	Mm.483845	NM_001081027	ENSMUSG00000052726	Kcnt2	E330038N15Rik|Slick	potassium channel, subfamily T, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-20035197-4	chr3	20035090	20035290	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001146324, exon 1 of 9)	exon (NM_001146324, exon 1 of 9)	120.0	NM_001146324	12807.0	Mm.291533	NM_080634	ENSMUSG00000027615	Hps3	coa	HPS3, biogenesis of lysosomal organelles complex 2 subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-94405051-4	chr2	94404958	94405158	+	995.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183106, intron 1 of 24)	intron (NM_183106, intron 1 of 24)	1631.0	NM_183106	74569.0	Mm.248504	NM_183106	ENSMUSG00000027194	Ttc17	9130020K17Rik|D2Bwg1005e	tetratricopeptide repeat domain 17	protein-coding	2.73130286788733	3.06128981428461	1.62486064990062	1.78558065103985	1.87353219232633	2.40329386556982	2.65464881033027	2.11701036407269	-0.350069363844656	0.695153481984171	0.997870549741095
Merged-chr17-6746190-4	chr17	6746101	6746301	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009510, intron 7 of 12)	intron (NM_009510, intron 7 of 12)	36579.0	NM_009510	22350.0	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-108317702-4	chr8	108317614	108317814	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MD1|LINE|L1	266963.0	NR_077224	109215.0	Mm.65282	NR_077224	ENSMUSG00000110613	Lncbate1	3010033K07Rik|Lnc-BATE1	brown adipose tissue enriched long non-coding RNA 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-9977759-4	chr8	9977661	9977861	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026868)	promoter-TSS (NM_026868)	44.0	NM_026868	68904.0	Mm.142570	NM_026868	ENSMUSG00000040396	Abhd13	1110065L07Rik|AI463703|AI788994	abhydrolase domain containing 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-71140330-4	chr9	71140258	71140458	+	837.237488	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_073483, intron 1 of 6)	intron (NR_073483, intron 1 of 6)	22275.0	NM_001271843	64008.0	Mm.449427	NM_022026	ENSMUSG00000032204	Aqp9	1700020I22Rik|AI266899|AQP-9	aquaporin 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-4611037-1	chr13	4610937	4611137	+	553.0	f1_c57bl6.idr	Intergenic	Intergenic	-1873.0	NM_018859	56043.0	Mm.251908	NM_018859	ENSMUSG00000045410	Akr1e1	1810061I10Rik|Akr1e2	aldo-keto reductase family 1, member E1	protein-coding	1.17462374749541	0.75008413155379	0.719264032156507	1.95573047679389	0.659507786298395	0.756924920854496	0.49507686210785	0.483385642222186	-3.30613778146805	0.0403591171201561	0.286493264140378
Merged-chr17-57279129-4	chr17	57279028	57279228	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011691)	promoter-TSS (NM_011691)	28.0	NM_001163815	22324.0	Mm.248172	NM_011691	ENSMUSG00000034116	Vav1	Vav|vav-T	vav 1 oncogene	protein-coding	3.56089962397255	3.68607323466214	2.50377995017157	3.6810334172305	3.64902864490973	4.06356855465889	3.223230301219	3.6992158334246	0.374595088117675	0.501148722505304	0.938226730357636
Merged-chr8-19707373-5	chr8	19707238	19707438	+	901.2000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22238.0	NM_001270553	100861668.0	Mm.491087	NM_001270553	ENSMUSG00000095294	Gm21119	-	predicted gene, 21119	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-12284786-4	chr14	12284657	12284857	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001284384, intron 1 of 4)	intron (NM_001284384, intron 1 of 4)	554.0	NM_001284386	218734.0	Mm.44068	NM_146051	ENSMUSG00000033111	3830406C13Rik	-	RIKEN cDNA 3830406C13 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83734337-2	chr11	83734237	83734437	+	765.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12603.0	NM_183249	66107.0	Mm.902	NM_183249	ENSMUSG00000051748	Wfdc21	1100001G20Rik|Wdnm1-like	WAP four-disulfide core domain 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-94381526-2	chr11	94381420	94381620	+	647.0	f0_balb.idr|f1_balb.idr	intron (NM_029600, intron 1 of 30)	intron (NM_029600, intron 1 of 30)	11456.0	NM_029600	76408.0	Mm.23942	NM_029600	ENSMUSG00000020865	Abcc3	1700019L09Rik|ABC31|MLP2|MOAT-D|MRP3	ATP-binding cassette, sub-family C (CFTR/MRP), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117267615-4	chr8	117267499	117267699	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	10580.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-51613906-2	chr8	51613806	51614006	+	573.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1E|LTR|ERVL-MaLR	-742705.0	NR_151738	330767.0	Mm.246790	NR_151738	ENSMUSG00000110013	1190028D05Rik	-	RIKEN cDNA 1190028D05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-139298685-3	chr7	139298577	139298777	+	940.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50195.0	NM_001098636	101631.0	Mm.334300	NM_001033206	ENSMUSG00000060260	Pwwp2b	AI594893|D7Ertd517e|D930023J19Rik|Pwwp2	PWWP domain containing 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139285540-4	chr5	139285426	139285626	+	956.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172723, intron 4 of 10)	intron (NM_172723, intron 4 of 10)	32029.0	NM_001163316	67604.0	Mm.270137	NM_026269	ENSMUSG00000025858	Get4	1110007L15Rik|AW412535|Cee	golgi to ER traffic protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-87266969-1	chr17	87266869	87267069	+	781.0	f1_balb.idr	Intergenic	Intergenic	-1022.0	NM_139295	193813.0	Mm.30251	NM_139295	ENSMUSG00000024150	Mcfd2	1810021C21Rik|F5f8d|Lman1ip|Sdnsf	multiple coagulation factor deficiency 2	protein-coding	0.233320997160665	-0.00915063524938556	-0.0141657496467085	0.394170438403131	0.682155111621336	-0.00801882379450441	-0.0130604469505825	0.143823794096063	0.59468587323522	0.779995820832886	1
Merged-chr13-55447861-4	chr13	55447767	55447967	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038018, intron 1 of 15)	intron (NM_001038018, intron 1 of 15)	2536.0	NM_001112711	26385.0	Mm.10193	NM_011938	ENSMUSG00000074886	Grk6	Gprk6	G protein-coupled receptor kinase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-22376625-4	chr10	22376549	22376749	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14755.0	NM_020030	56554.0	Mm.458004	NM_020030	ENSMUSG00000078452	Raet1d	RAE-1delta	retinoic acid early transcript delta	protein-coding	3.19274337261623	1.75050700539781	1.96621892635738	3.28836310600798	4.62096728427417	4.54378821848763	4.4049746808251	4.44850762937608	2.54416466218862	8.11684635514623e-06	0.000386452073686684
Merged-chr10-81349332-2	chr10	81349232	81349432	+	935.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163165, intron 3 of 9)	intron (NM_001163165, intron 3 of 9)	1094.0	NM_001163165	15353.0	Mm.38474	NM_010440	ENSMUSG00000020232	Hmg20b	AW610687|BRAF35|Hmgx2|Hmgxb2|Smarce1r	high mobility group 20B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-41182524-1	chr3	41182424	41182624	+	589.0	f0_balb.idr	Intergenic	Intergenic	-99478.0	NM_027558	70804.0	Mm.40321	NM_027558	ENSMUSG00000049940	Pgrmc2	4631434O19Rik|5730409G06Rik|DG6|PMBP	progesterone receptor membrane component 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111667807-2	chr12	111667707	111667907	+	871.6666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4531.0	NM_021273	12709.0	Mm.16831	NM_021273	ENSMUSG00000001270	Ckb	B-CK|Bck|CPK-B|Ck-3|Ck3|Ckbb	creatine kinase, brain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-30655652-4	chr14	30655522	30655722	+	837.55835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177815, intron 1 of 12)	PB1D10|SINE|Alu	1247.0	NM_177815	328370.0	Mm.259657	NM_177815	ENSMUSG00000052395	Rft1	D930025H04	RFT1 homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-31129316-2	chr6	31129216	31129416	+	617.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_110471, intron 3 of 3)	intron (NR_110471, intron 3 of 3)	-66223.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25010481-2	chr7	25010381	25010581	+	976.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008168, exon 20 of 20)	exon (NM_008168, exon 20 of 20)	-4544.0	NM_001290469	232975.0	Mm.44101	NM_144921	ENSMUSG00000040907	Atp1a3	Atpa-2	ATPase, Na+/K+ transporting, alpha 3 polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153135725-2	chr2	153135625	153135825	+	634.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001172117, intron 8 of 12)	RSINE1|SINE|B4	-25576.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-39011922-2	chr2	39011822	39012022	+	756.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028809, intron 1 of 3)	B1_Mm|SINE|Alu	3783.0	NM_028809	74192.0	Mm.38155	NM_028809	ENSMUSG00000026755	Arpc5l	2010015J01Rik|AI852867|ARC16-2|AW555592|AW742746	actin related protein 2/3 complex, subunit 5-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-102974244-4	chr2	102974125	102974325	+	978.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72560.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166800438-2	chr2	166800338	166800538	+	772.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_023815)	TTS (NM_023815)	-5143.0	NM_001085495	99371.0	Mm.297192	NM_001085495	ENSMUSG00000074582	Arfgef2	AI463430|AW493672|BIG2|E230011G24Rik	ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-101168489-2	chr4	101168389	101168589	+	624.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146145, intron 11 of 24)	intron (NM_146145, intron 11 of 24)	96793.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35169320-2	chr17	35169220	35169420	+	964.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-4443.0	NM_020027	53761.0	Mm.272462	NM_020027	ENSMUSG00000024393	Prrc2a	3110039B05Rik|Bat-2|Bat2|D17H6S51E|G2|Wbp12|mKIAA4178	proline-rich coiled-coil 2A	protein-coding	0.105411292095475	-0.203170094141296	0.0724507142970575	-0.208873330134633	-0.0901352467431855	0.226133244633359	-0.205694808040215	-0.208443798286985	-0.0438294810438054	0.984738996041823	1
Merged-chr14-50352592-3	chr14	50352481	50352681	+	923.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR41|LTR|ERV1	-5333.0	NM_205819	239081.0	Mm.291512	NM_205819	ENSMUSG00000051969	Tlr11	Gm287	toll-like receptor 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-108729225-2	chr8	108729125	108729325	+	789.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007496, intron 1 of 9)	intron (NM_007496, intron 1 of 9)	14581.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36286306-6	chr18	36286216	36286416	+	858.694458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008989, intron 1 of 1)	intron (NM_008989, intron 1 of 1)	5154.0	NM_008989	19290.0	Mm.231802	NM_008989	ENSMUSG00000043991	Pura	CAGER-1|Pur-alpha|ssCRE-BP	purine rich element binding protein A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-13439367-2	chr10	13439267	13439467	+	825.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001195065, intron 1 of 12)	L1MC5|LINE|L1	35029.0	NM_001195065	215789.0	Mm.283359	NM_001033257	ENSMUSG00000062866	Phactr2	AV158170|BC012871	phosphatase and actin regulator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-102073753-4	chr15	102073638	102073838	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145625)	promoter-TSS (NM_145625)	-35.0	NM_145625	75705.0	Mm.290022	NM_145625	ENSMUSG00000058655	Eif4b	2310046H11Rik|AL024095|C85189|Eif4a2	eukaryotic translation initiation factor 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-38471906-2	chr15	38471806	38472006	+	913.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18641.0	NR_105916	102465574.0		NR_105916	ENSMUSG00000099110	Mir6951	Gm27765|mmu-mir-6951	microRNA 6951	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-55020310-4	chr13	55020220	55020420	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033245, intron 1 of 18)	intron (NM_001033245, intron 1 of 18)	499.0	NM_001206390	212032.0	Mm.267479	NM_001033245	ENSMUSG00000025877	Hk3	HK III|HK-III	hexokinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71698694-2	chr8	71698574	71698774	+	938.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_028189, intron 1 of 2)	intron (NM_028189, intron 1 of 2)	3126.0	NM_028189	72297.0	Mm.290837	NM_028189	ENSMUSG00000031803	B3gnt3	2210008L19Rik	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3	protein-coding	1.7105805052166	2.6678527192382	1.63596061882034	2.60002394172234	2.57208581994519	3.21304597523925	1.64808909303763	2.70563931551194	0.84284719911925	0.342076608889227	0.843220480780636
Merged-chr7-19283183-3	chr7	19283132	19283332	+	900.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013648, intron 1 of 9)	intron (NM_013648, intron 1 of 9)	608.0	NM_013648	20167.0	Mm.24142	NM_013648	ENSMUSG00000030401	Rtn2	MMS10-P|Ms10p|NSPLI|Nspl1	reticulon 2 (Z-band associated protein)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70068011-2	chr14	70067911	70068111	+	692.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9434.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-89325147-2	chr6	89325047	89325247	+	592.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008881, intron 23 of 31)	intron (NM_008881, intron 23 of 31)	37466.0	NM_008881	18844.0	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-107889241-4	chr13	107889136	107889336	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 2 of 14)	CpG	828.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-46182829-2	chr16	46182729	46182929	+	555.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27752.0	NM_001304528	11615.0	Mm.330692	NM_001304528	ENSMUSG00000048087	Gm4737	AL024110|EG11615	predicted gene 4737	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-4266801-3	chr11	4266671	4266871	+	746.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039537)	promoter-TSS (NM_001039537)	-25.0	NM_001039537	16878.0	Mm.4964	NM_008501	ENSMUSG00000034394	Lif	-	leukemia inhibitory factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-47788527-4	chr6	47788406	47788606	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15146.0	NR_030485	735289.0		NR_030485	ENSMUSG00000076060	Mir704	Mirn704|mir-704|mmu-mir-704	microRNA 704	ncRNA	4.8081382535941	3.6566257264233	4.8486046822155	4.43523477986256	4.38835666247556	4.57579586112981	4.26365010472517	4.25257756821753	-0.191460522741288	0.639680257444035	0.982599433509505
Merged-chr7-29301420-1	chr7	29301320	29301520	+	577.0	f1_c57bl6.idr	Intergenic	Intergenic	-2585.0	NM_013874	29861.0	Mm.101885	NM_013874	ENSMUSG00000030584	Dpf1	Neud4	D4, zinc and double PHD fingers family 1	protein-coding	-0.364508034508901	0.231757307414047	-0.501955391549695	-0.50501377807342	-0.232961517855496	-0.497097383896533	-0.501081053781646	-0.504479498861281	-1.82965093255265	0.480855451975344	1
Merged-chr17-33554385-2	chr17	33554285	33554485	+	657.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_172619)	TTS (NM_172619)	-1322.0	NM_053214	17916.0	Mm.42019	NM_053214	ENSMUSG00000024300	Myo1f	C330006B10Rik	myosin IF	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59800436-3	chr15	59800327	59800527	+	881.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-5468.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	0.164220912980536	0.184208543908918	0.758338474902777	0.341671965381069	0.165474230531407	0.185677538806552	0.87391869944007	0.614568244968514	0.696283462969797	0.726499946201654	1
Merged-chr15-79804561-4	chr15	79804431	79804631	+	841.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_030689, exon 1 of 5)	exon (NM_030689, exon 1 of 5)	178.0	NM_030689	73340.0	Mm.38438	NM_030689	ENSMUSG00000022421	Nptxr	1200009K17Rik|1700036C17Rik|5730406O18Rik|AI452369|AI785356|D15Bwg0580e|NPR|Npcd	neuronal pentraxin receptor	protein-coding	1.02107676620938	0.573540349993735	1.92679253956718	0.54739751190454	1.03236559534499	0.576782753845319	1.52334140193998	0.549430016378259	-0.637386936524263	0.694165616762596	0.997569417625163
Merged-chr7-116504269-4	chr7	116504170	116504370	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001130479)	promoter-TSS (NM_001130479)	-99.0	NM_001130479	53322.0	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116031221-4	chr11	116031102	116031302	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286006, intron 1 of 15)	intron (NM_001286006, intron 1 of 15)	886.0	NM_172569	217331.0	Mm.297706	NM_172569	ENSMUSG00000020770	Unk	B230379M23Rik|Unkh|Zc3h5|Zc3hdc5|mKIAA1753	unkempt family zinc finger	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-75105798-3	chr10	75105723	75105923	+	918.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081412, intron 1 of 22)	MER58A|DNA|hAT-Charlie	44927.0	NM_001081412	110279.0	Mm.333722	NM_001081412	ENSMUSG00000009681	Bcr	5133400C09Rik|AI561783|AI853148|mKIAA3017	breakpoint cluster region	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-144974651-1	chr4	144974551	144974751	+	549.0	f0_balb.idr	3' UTR (NM_001276502, exon 69 of 69)	3' UTR (NM_001276502, exon 69 of 69)	81514.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-15695771-4	chr17	15695668	15695868	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9199.0	NM_007690	12648.0	Mm.8137	NM_007690	ENSMUSG00000023852	Chd1	4930525N21Rik|AI851787|AW555109	chromodomain helicase DNA binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-50132607-2	chr11	50132507	50132707	+	690.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029745, intron 1 of 20)	intron (NM_029745, intron 1 of 20)	1247.0	NM_029745	76795.0	Mm.290975	NM_029745	ENSMUSG00000036644	Tbc1d9b	-	TBC1 domain family, member 9B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-102796602-1	chr2	102796502	102796702	+	700.0	f1_balb.idr	Intergenic	Intergenic	-49842.0	NR_153853	102637542.0	Mm.371582	NR_153852		Gm13872	-	predicted gene 13872	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-24500681-2	chr14	24500581	24500781	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9928.0	NM_001360586	20088.0	Mm.16775	NM_011297	ENSMUSG00000025290	Rps24	-	ribosomal protein S24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-72940934-4	chr11	72940796	72940996	+	919.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F2|LTR|ERVL-MaLR	-20273.0	NM_016745	53313.0	Mm.6306	NM_016745	ENSMUSG00000020788	Atp2a3	SERCA3b|Serca3	ATPase, Ca++ transporting, ubiquitous	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-105996274-4	chr1	105996203	105996403	+	831.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122675, intron 1 of 12)	intron (NM_001122675, intron 1 of 12)	5897.0	NM_001122675	227449.0	Mm.210188	NM_001122675	ENSMUSG00000038866	Zcchc2	9930114B20Rik|AW212015	zinc finger, CCHC domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-101742863-4	chr13	101742769	101742969	+	938.2416380000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077495, intron 2 of 15)	intron (NM_001077495, intron 2 of 15)	25348.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-133494951-2	chr2	133494851	133495051	+	587.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57208.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-70793632-2	chr2	70793532	70793732	+	773.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_172664, intron 1 of 19)	ORR1D-int|LTR|ERVL-MaLR	31848.0	NM_172664	228012.0	Mm.136511	NM_172664	ENSMUSG00000041997	Tlk1	4930545J15Rik	tousled-like kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-30182934-4	chr17	30182841	30183041	+	925.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356265, intron 4 of 5)	intron (NM_001356265, intron 4 of 5)	177902.0	NM_001356265	21769.0	Mm.220972	NM_148926	ENSMUSG00000044477	Zfand3	AW539211|TEG-27|Tex27	zinc finger, AN1-type domain 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-3322434-2	chr2	3322334	3322534	+	639.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008708, intron 10 of 13)	intron (NM_008708, intron 10 of 13)	10194.0	NM_001013376	227522.0	Mm.293948	NM_001013376	ENSMUSG00000049950	Rpp38	C330006A15Rik	ribonuclease P/MRP 38 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-148811755-1	chr4	148811655	148811855	+	551.0	f1_c57bl6.idr	intron (NM_027195, intron 1 of 15)	intron (NM_027195, intron 1 of 15)	7363.0	NM_027195	69743.0	Mm.233879	NM_027195	ENSMUSG00000028977	Casz1	2410019P08Rik|AV096627|BC040081|Cst|D4Ertd432e	castor zinc finger 1	protein-coding	0.635309002750248	2.43934303263936	2.55353088653647	0.674784848936858	0.897719350459249	1.95777137227007	0.70339594377529	0.678765971207528	-1.7839151969707	0.473513196225642	0.926125823511231
Merged-chr15-93484431-2	chr15	93484331	93484531	+	986.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358750, intron 6 of 6)	ID_B1|SINE|B4	85967.0	NM_001285863	223828.0	Mm.74208	NM_146062	ENSMUSG00000036167	Pphln1	CR|HSPC206|HSPC232	periphilin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-81046700-3	chr3	81046600	81046800	+	975.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019971, intron 1 of 5)	intron (NM_019971, intron 1 of 5)	10284.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-121657091-3	chr3	121656991	121657191	+	847.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10638.0	NR_036458	100503044.0	Mm.65320	NM_176992	ENSMUSG00000044522	A730020M07Rik	-	RIKEN cDNA A730020M07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-59465350-3	chr1	59465253	59465453	+	807.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16794.0	NM_008057	14369.0	Mm.297906	NM_008057	ENSMUSG00000041075	Fzd7	Fz7	frizzled class receptor 7	protein-coding	-0.339033014450202	-0.774643058470277	-0.777410977756846	-0.77953576756815	-0.527287666824175	-0.773802961957106	-0.606368262257622	-0.779165251228185	-0.239355761176214	0.932747891490759	1
Merged-chr18-13006514-4	chr18	13006427	13006627	+	823.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153087)	promoter-TSS (NM_153087)	-463.0	NM_153087	225192.0	Mm.207073	NM_153087	ENSMUSG00000037346	Hrh4	AXOR35|BG26|GPCR105|GPRv53|H4|H4R|HH4R	histamine receptor H4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-25567418-2	chr15	25567318	25567518	+	792.799988	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55132.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-109374320-2	chr11	109374220	109374420	+	569.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010303, intron 2 of 3)	B1_Mur4|SINE|Alu	-10666.0	NR_038097	100036768.0	Mm.467767	NR_038097	ENSMUSG00000056687	Gm11696	-	predicted gene 11696	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-77329809-1	chr1	77329709	77329909	+	552.0	f0_balb.idr	Intergenic	Intergenic	166959.0	NR_105770	102465180.0		NR_105770	ENSMUSG00000099141	Mir6352	Gm27481|mmu-mir-6352	microRNA 6352	ncRNA	-0.762815510770208	-0.888810099978931	-0.89605646336994	-0.378435724824249	-0.901135071873698	-0.886197275572406	-0.895452375767285	-0.735451535779862	-1.91440903337127	0.505076966137192	1
Merged-chr14-70867995-3	chr14	70867907	70868107	+	913.861084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045939, intron 2 of 3)	Lx|LINE|L1	15074.0	NR_045939	73648.0	Mm.410851	NR_045939	ENSMUSG00000099528	2410012E07Rik	-	RIKEN cDNA 2410012E07 gene	ncRNA	3.60311737808496	4.13616550822065	3.57717791905484	3.88163534231207	4.9048112887337	4.09140453602308	5.79645839807631	4.03769471672278	1.40328017038082	0.00372121622000339	0.0531513716757151
Merged-chr11-43367995-3	chr11	43367899	43368099	+	867.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	6462.0	NR_029558	387164.0		NR_029558	ENSMUSG00000065601	Mir146	Mirn146|miR-146a|mmu-mir-146	microRNA 146	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-39966922-2	chr6	39966822	39967022	+	683.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360978, intron 1 of 3)	B4A|SINE|B4	95486.0	NM_001360978	434008.0	Mm.53915	NM_001004182	ENSMUSG00000057716	Tmem178b	A930009E05Rik|EG434008|Gm5567	transmembrane protein 178B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-113748900-2	chr6	113748800	113749000	+	770.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001036684, intron 19 of 19)	intron (NM_001036684, intron 19 of 19)	-8219.0	NM_024206	110379.0	Mm.29296	NM_024206	ENSMUSG00000030298	Sec13	1110003H02Rik|Sec13l1|Sec13r	SEC13 homolog, nuclear pore and COPII coat complex component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5807993-4	chr17	5807888	5808088	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8498.0	NR_045080	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118868025-4	chr9	118867920	118868120	+	960.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 9 of 13)	intron (NM_001113514, intron 9 of 13)	-58516.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	2.6947136824628	3.51748858304484	3.92510214855339	3.54765772948046	3.31528802265938	3.87980892231642	4.71514618904245	2.58323026858501	0.528382618852781	0.394811346886496	0.882837719236596
Merged-chr10-80433686-4	chr10	80433603	80433803	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164151)	promoter-TSS (NM_001164151)	-50.0	NM_001164148	21423.0	Mm.3406	NM_011548	ENSMUSG00000020167	Tcf3	A1|AA408400|ALF2|AW209082|E12|E12/E47|E2A|E47|KA1|ME2|Pan1|Pan2|TCF-3|Tcfe2a|VDIR|bHLHb21	transcription factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-98743508-2	chr7	98743408	98743608	+	851.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40261.0	NM_028410	72981.0	Mm.4428	NM_028410	ENSMUSG00000030753	Thap12	2900052B10Rik|Dap4|Prkrir|Rpkrir	THAP domain containing 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-38650989-4	chr15	38650895	38651095	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10909.0	NM_025494	66335.0	Mm.276618	NM_025494	ENSMUSG00000022295	Atp6v1c1	1700025B18Rik|U13839	ATPase, H+ transporting, lysosomal V1 subunit C1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-73652739-2	chr15	73652639	73652839	+	718.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F2|SINE|Alu	-27995.0	NM_001033219	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70387883-2	chr14	70387783	70387983	+	679.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_021308, intron 20 of 22)	MER77B|LTR|ERVL	-36459.0	NM_001135151	213053.0	Mm.270647	NM_144808	ENSMUSG00000022094	Slc39a14	FAD-123|ZIP-14|Zip14|fad123	solute carrier family 39 (zinc transporter), member 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-90082578-2	chr3	90082478	90082678	+	616.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357581, intron 1 of 8)	intron (NM_001357581, intron 1 of 8)	3057.0	NM_001293749	59069.0	Mm.240839	NM_022314	ENSMUSG00000027940	Tpm3	TM30nm|TMnm|Tm5NM|Tpm-5|Tpm5|Trop-5|gamma-TM|hTM30nm|hTMnm	tropomyosin 3, gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-33965268-3	chr13	33965177	33965377	+	906.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163239, intron 1 of 5)	intron (NM_001163239, intron 1 of 5)	618.0	NM_001163241	18105.0	Mm.264036	NM_020282	ENSMUSG00000046949	Nqo2	NMO2|Nmor2|Ox2	N-ribosyldihydronicotinamide quinone reductase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-144170720-1	chr3	144170620	144170820	+	626.0	f0_balb.idr	Intergenic	ORR1B2-int|LTR|ERVL-MaLR	31612.0	NM_001161770	16911.0	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-55058200-1	chr1	55058100	55058300	+	978.0	f1_c57bl6.idr	intron (NM_026424, intron 1 of 3)	Lx8|LINE|L1	5430.0	NM_001039710	67876.0	Mm.281019	NM_026424	ENSMUSG00000025981	Coq10b	1500041J02Rik|1700030I21Rik|9530077A17Rik|AV002237|AW742641	coenzyme Q10B	protein-coding	1.41516796726521	1.46550721980538	0.907344127246118	1.59980668583261	1.42712919908118	1.47670012518156	0.910353982684491	1.60872496632626	0.0357771970455986	0.977868391383575	0.998431161219273
Merged-chr18-35830297-2	chr18	35830197	35830397	+	600.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357458)	promoter-TSS (NM_001357458)	-17.0	NM_001357458	67393.0	Mm.94560	NM_133687	ENSMUSG00000046668	Cxxc5	4930415K17Rik	CXXC finger 5	protein-coding	0.740405999361704	0.262425310207927	0.544856651720547	0.25409503858859	0.81819725777891	0.263496597926883	0.551712057542873	0.254723273261298	0.217726109177832	0.912231810706342	1
Merged-chr14-115092238-4	chr14	115092128	115092328	+	939.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175500)	promoter-TSS (NM_175500)	13.0	NM_175500	103978.0	Mm.320791	NM_175500	ENSMUSG00000022112	Gpc5	A230034F01Rik	glypican 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94378483-4	chr10	94378373	94378573	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 1 of 4)	intron (NM_001359762, intron 1 of 4)	66524.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32965697-3	chr2	32965603	32965803	+	755.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	2402.0	NR_002898	104367.0	Mm.250030	NR_002898	ENSMUSG00000065124	Snora65	MBII-351|Rnu65	small nucleolar RNA, H/ACA box 65	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-11022982-4	chr4	11022886	11023086	+	965.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15367.0	NM_175175	71801.0	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-42210198-2	chr8	42210095	42210295	+	813.0	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	382928.0	NR_045497	69966.0	Mm.416903	NR_045497	ENSMUSG00000102046	2810404M03Rik	-	RIKEN cDNA 2810404M03 gene	ncRNA	1.9045372753623	2.46511765653278	1.38778575067389	1.8302123486039	2.91637141774771	2.6163355027095	2.93033749600065	3.30882458728778	2.18605573787999	0.00841638390676094	0.096171213441255
Merged-chr19-3916180-2	chr19	3916080	3916280	+	679.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026316, intron 8 of 9)	intron (NM_026316, intron 8 of 9)	-3406.0	NM_001271444	225887.0	Mm.44227	NM_144870	ENSMUSG00000059734	Ndufs8	BC021616|CI-23kD|TYKY	NADH dehydrogenase (ubiquinone) Fe-S protein 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-4313447-1	chr18	4313347	4313547	+	611.0	f0_c57.idr	Intergenic	Intergenic	39506.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106790921-2	chr11	106790821	106791021	+	750.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166685, intron 2 of 18)	intron (NM_001166685, intron 2 of 18)	1669.0	NM_001166685	320162.0	Mm.30524	NM_177088	ENSMUSG00000018372	Cep95	4732496G21Rik|AI118346|AI448335|Ccdc45|D330027A14Rik|F630025I20Rik	centrosomal protein 95	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-40832391-4	chr10	40832280	40832480	+	955.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_027879, exon 15 of 15)	3' UTR (NM_027879, exon 15 of 15)	50763.0	NM_027879	71713.0	Mm.46063	NM_027879	ENSMUSG00000038446	Cdc40	1200003H23Rik|EHB3|PRP17	cell division cycle 40	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-103306572-3	chr11	103306467	103306667	+	852.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38135.0	NM_133715	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36465217-4	chr18	36465100	36465300	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-10705.0	NM_026027	67199.0	Mm.30184	NM_026027	ENSMUSG00000024346	Pfdn1	2700086I23Rik|AA408327|AU044714	prefoldin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-30479556-4	chr14	30479473	30479673	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133761)	promoter-TSS (NM_133761)	8.0	NM_133761	75901.0	Mm.28733	NM_133761	ENSMUSG00000021962	Dcp1a	1110066A22Rik|4930568L04Rik|AU019772|D14Ertd817e|Mitc1|SMIF	decapping mRNA 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-139616276-3	chr4	139616119	139616319	+	700.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205173, intron 8 of 8)	intron (NM_001205173, intron 8 of 8)	-6675.0	NM_175438	212647.0	Mm.273571	NM_175438	ENSMUSG00000028737	Aldh4a1	A930035F14Rik|Ahd-1|Ahd1|Aldh4|Aldh5a1|E330022C09|P5cd|P5cdh|P5cdhl|P5cdhs|Ssdh1	aldehyde dehydrogenase 4 family, member A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-105770991-2	chr3	105770891	105771091	+	645.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145541, intron 1 of 7)	intron (NM_145541, intron 1 of 7)	30390.0	NM_145541	109905.0	Mm.101922	NM_145541	ENSMUSG00000068798	Rap1a	AI848598|G-22K|Krev-1|Rap1	RAS-related protein 1a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-77886545-2	chr10	77886445	77886645	+	838.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001287074, exon 12 of 12)	exon (NM_001287074, exon 12 of 12)	-6875.0	NR_015547	75188.0	Mm.348012	NM_029200	ENSMUSG00000096573	1700009J07Rik	4930535B06Rik	RIKEN cDNA 1700009J07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-35552120-2	chr18	35552020	35552220	+	621.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1290.0	NR_038073	100503380.0	Mm.482118	NR_038073	ENSMUSG00000097769	Snhg4	Gm17457	small nucleolar RNA host gene 4	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36943678-2	chr1	36943578	36943778	+	604.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4151.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-130058647-4	chr3	130058569	130058769	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207209, intron 1 of 23)	intron (NM_207209, intron 1 of 23)	2238.0	NM_207209	99683.0	Mm.192303	NM_207209	ENSMUSG00000001052	Sec24b	AI605202|SEC24	Sec24 related gene family, member B (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-122906758-1	chr9	122906658	122906858	+	605.0	f0_c57.idr	intron (NM_001353989, intron 2 of 2)	intron (NM_001353989, intron 2 of 2)	3512.0	NM_001353989	666257.0	Mm.390242	NM_001353989		Gm8008	EG666257|Znf660	predicted gene 8008	protein-coding	-1.19470384696939	-0.680995530274879	-1.18000752418307	-1.02205573797408	-1.19422589551209	-1.16668601215437	-1.17752894443093	-1.18739136583846	-2.58939083648206	0.425227369375087	1
Merged-chr9-20889402-4	chr9	20889312	20889512	+	877.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_145610, exon 3 of 11)	exon (NM_145610, exon 3 of 11)	1237.0	NM_145610	235036.0	Mm.2930	NM_145610	ENSMUSG00000004100	Ppan	A230087P06Rik|SSF1	peter pan homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-101972830-4	chr5	101972732	101972932	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 4 of 66)	B2_Mm2|SINE|B2	97089.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	1.8479259761994	2.08918793638775	3.50437969449994	2.98358343658535	2.67245739056135	2.10533320383297	3.58978211011117	2.99917457209218	0.298284078137367	0.708037175597231	0.998431161219273
Merged-chr9-76041536-2	chr9	76041436	76041636	+	604.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_173731, intron 1 of 8)	intron (NM_173731, intron 1 of 8)	26559.0	NM_173731	208982.0	Mm.82306	NM_173731	ENSMUSG00000007908	Hmgcll1	BC037381	3-hydroxymethyl-3-methylglutaryl-Coenzyme A lyase-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69430113-2	chr11	69430013	69430213	+	612.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081330, intron 76 of 85)	B2_Mm2|SINE|B2	-16438.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-83282548-2	chr4	83282443	83282643	+	823.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027238, intron 2 of 19)	intron (NM_027238, intron 2 of 19)	41646.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	1.30062984687438	1.48441361543841	0.776405861653479	1.58582680420591	0.751075508792487	1.49728562928394	0.779351980852302	1.38831949117512	-0.661402500086315	0.64879042855593	0.985309421980721
Merged-chr11-106762681-1	chr11	106762581	106762781	+	618.0	f0_balb.idr	intron (NR_073165, intron 6 of 9)	intron (NR_073165, intron 6 of 9)	11455.0	NM_001033435	380732.0	Mm.343952	NM_001033435	ENSMUSG00000040528	Milr1	Allergin-1|Gm885|Mca32	mast cell immunoglobulin like receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-5698838-1	chr2	5698738	5698938	+	815.0	f0_balb.idr	intron (NM_001290374, intron 1 of 9)	MTEb|LTR|ERVL-MaLR	15924.0	NM_001290374	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124688519-4	chr6	124688351	124688551	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149320, intron 1 of 11)	intron (NR_149320, intron 1 of 11)	23727.0	NM_013536	14791.0	Mm.6390	NM_013536	ENSMUSG00000004268	Emg1	C2f|Grcc2f	EMG1 N1-specific pseudouridine methyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-4593749-4	chr12	4593655	4593855	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198969, intron 1 of 16)	intron (NM_001198969, intron 1 of 16)	747.0	NM_001198968	20403.0	Mm.341204	NM_011365	ENSMUSG00000020640	Itsn2	AI327390|Ese2|Sh3d1B|Sh3p18|mKIAA1256	intersectin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-113597261-2	chr13	113597161	113597361	+	891.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_130796, intron 1 of 1)	intron (NM_130796, intron 1 of 1)	21303.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-82801726-2	chr1	82801626	82801826	+	567.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33270.0	NM_025453	66261.0	Mm.46325	NM_025453	ENSMUSG00000026149	Tm4sf20	1810018L02Rik	transmembrane 4 L six family member 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-152153973-4	chr4	152153874	152154074	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1767.0	NM_207687	56226.0	Mm.264215	NM_019585	ENSMUSG00000028943	Espn	je	espin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53069802-2	chr4	53069702	53069902	+	682.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_013454, exon 27 of 50)	exon (NM_013454, exon 27 of 50)	57922.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-128798420-4	chr6	128798321	128798521	+	877.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9780.0	NM_008527	17059.0	Mm.480764	NM_008527	ENSMUSG00000030325	Klrb1c	AI462337|CD161|Klrb1b|Ly-59|Ly55c|Ly59|NK-RP1|NK1.1|NKR-P1.9|NKRP1|NKRP140|Nk-1|Nk-1.2|Nk1|Nk1.2|Nkrp1b|Nkrp1c|ly-55c	killer cell lectin-like receptor subfamily B member 1C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-127351870-4	chr6	127351779	127351979	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11B|LTR|ERVK	-43912.0	NR_073373	232386.0	Mm.257367	NR_073373	ENSMUSG00000107153	Gm38404	D130058E03	predicted gene, 38404	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83731315-2	chr6	83731215	83731415	+	730.083313	f1_balb.idr|f1_c57bl6.idr	intron (NM_011912, intron 1 of 2)	intron (NM_011912, intron 1 of 2)	-11702.0	NM_134157	110935.0	Mm.220823	NM_134157	ENSMUSG00000006269	Atp6v1b1	AW208839|Atp6b1|D630003L15|D630030L16Rik|D630039P21Rik|Vpp-3|Vpp3	ATPase, H+ transporting, lysosomal V1 subunit B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-81290246-1	chr7	81290146	81290346	+	550.0	f1_c57bl6.idr	intron (NM_008803, intron 3 of 21)	intron (NM_008803, intron 3 of 21)	54988.0	NM_009092	20068.0	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-163764568-3	chr2	163764482	163764682	+	999.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14343.0	NM_001272052	11486.0	Mm.388	NM_007398	ENSMUSG00000017697	Ada	-	adenosine deaminase	protein-coding	2.65988897593701	2.73991092879334	2.79268425325143	1.87863972427368	5.35400133507558	4.09438462699819	4.46945310350666	5.30990972839062	3.3399608903825	2.1482829364488e-09	3.30449982968112e-07
Merged-chr7-19004116-4	chr7	19004041	19004241	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178757)	promoter-TSS (NM_178757)	76.0	NM_178757	272359.0	Mm.274237	NM_178757	ENSMUSG00000044030	Irf2bp1	6330414O09Rik|C530033F24	interferon regulatory factor 2 binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-120148642-2	chr6	120148542	120148742	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016718, intron 1 of 3)	(TG)n|Simple_repeat|Simple_repeat	-45181.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-85244681-2	chr13	85244581	85244781	+	577.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145452, intron 7 of 24)	AT_rich|Low_complexity|Low_complexity	44805.0	NM_145452	218397.0	Mm.259653	NM_145452	ENSMUSG00000021549	Rasa1	Gap|RasGAP|Rasa	RAS p21 protein activator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-41161649-4	chr9	41161629	41161829	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3667.0	NM_176860	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	5.2369107023865	5.33920971165548	5.3655834371648	5.51517163225486	4.7309217774649	3.63267396688203	4.39535107021577	4.20139031977445	-1.27330732682794	0.000248582151889073	0.00638193008209364
Merged-chr17-83654736-4	chr17	83654605	83654805	+	887.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22810.0	NM_153512	225030.0	Mm.223506	NM_153512	ENSMUSG00000045053	Kcng3	KV6.3|Kv10.1a|Kv10.1b	potassium voltage-gated channel, subfamily G, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-54002425-2	chr11	54002325	54002525	+	919.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_019687, intron 3 of 9)	intron (NM_019687, intron 3 of 9)	-22092.0	NM_019723	56517.0	Mm.154284	NM_019723	ENSMUSG00000063652	Slc22a21	Octn3|Slc22a9	solute carrier family 22 (organic cation transporter), member 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-71293750-2	chr6	71293650	71293850	+	631.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357905)	promoter-TSS (NM_001357905)	-15.0	NM_001357905	381785.0	Mm.333146	NM_001033462	ENSMUSG00000073018	Gm1070	-	predicted gene 1070	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-67213852-4	chr17	67213763	67213963	+	972.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	140596.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	1.24855607031104	3.1591535847352	2.48465464868811	2.41016951421004	2.68128019366743	3.25696186779691	1.35684531054833	2.42342978733847	0.199367710126199	0.836595301429906	0.998431161219273
Merged-chr6-66929831-4	chr6	66929736	66929936	+	945.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177556, intron 2 of 3)	Lx8|LINE|L1	32945.0	NM_001177558	14701.0	Mm.234342	NM_025278	ENSMUSG00000036402	Gng12	2010305F15Rik|AA536815|AI115529|AI314170|AI842738	guanine nucleotide binding protein (G protein), gamma 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-137504366-2	chr5	137504266	137504466	+	686.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1937.0	NM_028753	74097.0	Mm.290242	NM_028753	ENSMUSG00000029715	Pop7	0610037N12Rik|AI852017|Rpp20	processing of precursor 7, ribonuclease P family, (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-73524112-2	chr7	73524012	73524212	+	677.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081345, intron 2 of 38)	intron (NM_001081345, intron 2 of 38)	17634.0	NM_001081345	244059.0	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-19020548-4	chr11	19020455	19020655	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1586.0	NM_010789	17268.0	Mm.356578	NM_010789	ENSMUSG00000020160	Meis1	C530044H18Rik|Evi8	Meis homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-90193045-2	chr7	90192945	90193145	+	785.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360867, intron 17 of 19)	intron (NM_001360867, intron 17 of 19)	62832.0	NM_001252520	233489.0	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	-1.5061220274826	-1.47360709383584	-1.48343987814663	-1.49151681994238	-1.50383953926072	-1.47147628845725	-1.0170701920923	-1.49007105122263	2.15652851593596	0.535359572134045	1
Merged-chr11-86753260-1	chr11	86753160	86753360	+	545.0	f0_balb.idr	intron (NM_001003908, intron 1 of 31)	intron (NM_001003908, intron 1 of 31)	4307.0	NM_001003908	67300.0	Mm.254588	NM_001003908	ENSMUSG00000047126	Cltc	3110065L21Rik|CHC|R74732	clathrin, heavy polypeptide (Hc)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43429019-2	chr4	43428919	43429119	+	816.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162381, intron 1 of 4)	intron (NM_001162381, intron 1 of 4)	115.0	NM_177377	329831.0	Mm.454466	NM_177377	ENSMUSG00000042788	Fam166b	4833436C18Rik	family with sequence similarity 166, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-104591169-2	chr11	104591069	104591269	+	587.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	13888.0	NM_001355755	17896.0	Mm.390355	NM_010858	ENSMUSG00000061086	Myl4	ALC1|AMLC|ELC|ELC1a|GT1|MLC1EMB|MLC1a|Myla	myosin, light polypeptide 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-62504928-3	chr10	62504847	62505047	+	856.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358965, intron 2 of 3)	B1_Mur4|SINE|Alu	2810.0	NM_011157	19073.0	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-183992125-2	chr1	183992025	183992225	+	718.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	41873.0	NM_028516	73363.0	Mm.50115	NM_028516	ENSMUSG00000044854	1700056E22Rik	-	RIKEN cDNA 1700056E22 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-38695605-4	chr6	38695499	38695699	+	876.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32530.0	NM_001101507	665180.0	Mm.349066	NM_001101507	ENSMUSG00000079598	Clec2l	AI414054|AW122724|Gm1064	C-type lectin domain family 2, member L	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-127780972-8	chr8	127780907	127781107	+	789.075012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	481355.0	NM_001013580	93742.0	Mm.299254	NM_033620	ENSMUSG00000025812	Pard3	AA960621|AI256638|Asip|D8Ertd580e|Par-3|Par3|Pard-3|Pard3a|Phip	par-3 family cell polarity regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85954166-2	chr12	85954066	85954266	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347395, intron 28 of 32)	intron (NM_001347395, intron 28 of 32)	124875.0	NM_009368	21809.0	Mm.3992	NM_009368	ENSMUSG00000021253	Tgfb3	TGF-beta-3|Tgfb-3	transforming growth factor, beta 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46640018-4	chr8	46639914	46640114	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009810)	TTS (NM_009810)	22723.0	NM_009810	12367.0	Mm.34405	NM_009810	ENSMUSG00000031628	Casp3	A830040C14Rik|AC-3|CASP-3|CC3|CPP-32|CPP32|Caspase-3|Lice|SCA-1|Yama|mldy	caspase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-124803080-4	chr4	124802941	124803141	+	742.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008636, intron 1 of 10)	intron (NM_008636, intron 1 of 10)	492.0	NM_008636	17764.0	Mm.272397	NM_008636	ENSMUSG00000028890	Mtf1	MTF-1|Thyls	metal response element binding transcription factor 1	protein-coding	0.501466724970413	1.42945025920116	1.03155918745444	1.21707799046895	0.503470801385726	0.535369379581917	0.525100901844621	1.11953712694405	-1.92670449892921	0.262826102952455	0.764148848923318
Merged-chr17-70986574-2	chr17	70986474	70986674	+	901.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023402, intron 1 of 3)	intron (NM_023402, intron 1 of 3)	3942.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-45673194-4	chr19	45673134	45673334	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13041.0	NM_013907	30838.0	Mm.254739	NM_013907	ENSMUSG00000040913	Fbxw4	Dac|Fbw4|SHFM3|SHSF3|dactylin|dactylyn	F-box and WD-40 domain protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-132033988-4	chr3	132033895	132034095	+	872.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51297.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-127980231-2	chr1	127980131	127980331	+	927.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285945, intron 12 of 20)	intron (NM_001285945, intron 12 of 20)	111458.0	NM_178690	226407.0	Mm.489713	NM_178690	ENSMUSG00000036104	Rab3gap1	1700003B17Rik|4732493F09Rik|AL117896|Rab3gap|p130	RAB3 GTPase activating protein subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-23874646-4	chr5	23874563	23874763	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22430.0	NR_028536	100217436.0		NR_028536		Snord93	Gm22397|MBII-336	small nucleolar RNA, C/D box 93	snoRNA	5.43610830436601	5.4321924687045	4.8088250959791	5.10983430360398	5.47347454597782	5.81414240603918	5.82214696325804	5.09924620663997	0.40769646654902	0.173109822049324	0.640902961210202
Merged-chr1-65010328-4	chr1	65010248	65010448	+	993.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22411.0	NM_001310617	70861.0	Mm.18725	NM_027582	ENSMUSG00000025955	Akr1cl	4921521F21Rik|AI451536|AI503553	aldo-keto reductase family 1, member C-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-79711745-4	chr8	79711629	79711829	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357235)	promoter-TSS (NM_001357235)	11.0	NM_015751	24015.0	Mm.5831	NM_015751	ENSMUSG00000058355	Abce1	C79080|Oabp|RLI|RNS41|RNS4I|Rnaseli	ATP-binding cassette, sub-family E (OABP), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-114849660-2	chr6	114849560	114849760	+	605.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253718, intron 19 of 19)	intron (NM_001253718, intron 19 of 19)	72161.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-4390658-2	chr10	4390558	4390758	+	588.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2550.0	NM_001033466	381990.0	Mm.262466	NM_001033466	ENSMUSG00000075327	Zbtb2	Gm1103	zinc finger and BTB domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5728343-4	chr17	5728237	5728437	+	926.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 7 of 8)	MTC|LTR|ERVL-MaLR	-70320.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-13295274-4	chr10	13295169	13295369	+	798.033325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195065, intron 1 of 12)	intron (NM_001195065, intron 1 of 12)	29020.0	NM_001195096	215789.0	Mm.283359	NM_001033257	ENSMUSG00000062866	Phactr2	AV158170|BC012871	phosphatase and actin regulator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-119014949-1	chr2	119014849	119015049	+	682.0	f1_balb.idr	Intergenic	Intergenic	14444.0	NM_199310	269336.0	Mm.292465	NM_199310	ENSMUSG00000039983	Ccdc32	Gm631	coiled-coil domain containing 32	protein-coding	0.183706955674141	0.0517404779158433	0.837250487993236	0.0406682895902683	0.188192886210634	0.053143817933041	0.0468785754836457	0.704943070772216	-0.308148016200707	0.881215643588339	1
Merged-chr3-52198179-4	chr3	52198089	52198289	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70148.0	NM_019739	56458.0	Mm.29891	NM_019739	ENSMUSG00000044167	Foxo1	AI876417|Afxh|FKHR|Fkhr1|Foxo1a	forkhead box O1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-103848452-1	chr3	103848352	103848552	+	774.0	f1_c57bl6.idr	intron (NM_001142960, intron 3 of 3)	RLTR22_Mus|LTR|ERVK	-11343.0	NR_104070	19260.0	Mm.395	NM_008979	ENSMUSG00000027843	Ptpn22	70zpep|PEP|Ptpn8	protein tyrosine phosphatase, non-receptor type 22 (lymphoid)	protein-coding	1.86589321164397	0.636961368163762	0.6232799735375	1.26220727819181	0.596978719664812	0.640005910696406	1.3230485629211	1.2706034154016	-0.802767519000311	0.618847988893961	0.978231579824862
Merged-chr16-85099239-4	chr16	85099131	85099331	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198825, intron 3 of 15)	intron (NM_001198825, intron 3 of 15)	74476.0	NM_001198825	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99423664-2	chr15	99423564	99423764	+	639.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001001884, exon 11 of 13)	exon (NM_001001884, exon 11 of 13)	30445.0	NM_001171035	110213.0	Mm.16769	NM_026669	ENSMUSG00000023010	Tmbim6	5031406P05Rik|Bi1|Tegt	transmembrane BAX inhibitor motif containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-19084517-4	chr3	19084435	19084635	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	78560.0	NM_028840	74252.0	Mm.200383	NM_028840	ENSMUSG00000027599	Armc1	2310016N05Rik|2900046P06Rik|3110009G21Rik|AA409258|AW048872|Arcp|C330014L16Rik	armadillo repeat containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118494758-3	chr11	118494643	118494843	+	803.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024931, intron 13 of 14)	intron (NM_001024931, intron 13 of 14)	17911.0	NM_001359368	217364.0	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-12217523-2	chr15	12217423	12217623	+	567.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356498, intron 1 of 15)	intron (NM_001356498, intron 1 of 15)	12495.0	NM_172958	268783.0	Mm.54460	NM_172958	ENSMUSG00000039458	Mtmr12	3Pap|4932703C11|C730015A02Rik|Pip3ap|mKIAA1682	myotubularin related protein 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-37471874-2	chr17	37471774	37471974	+	997.4166869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVB7_4-LTR_MM|LTR|ERVK	5666.0	NM_146835	258832.0	Mm.377712	NM_146835	ENSMUSG00000029184	Olfr109	MOR250-1	olfactory receptor 109	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-62058272-2	chr18	62058172	62058372	+	945.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	105197.0	NM_172628	225608.0	Mm.262320	NM_172628	ENSMUSG00000045629	Sh3tc2	D430044G18Rik	SH3 domain and tetratricopeptide repeats 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139666678-4	chr5	139666564	139666764	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	69669.0	NM_174850	231830.0	Mm.240510	NM_174850	ENSMUSG00000036718	Micall2	A930021H16Rik|JRAB|MICAL-L2|mFLJ00139	MICAL-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-123506996-4	chr3	123506998	123507198	+	988.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008939)	TTS (NM_008939)	968.0	NR_028573	100306957.0	Mm.260791	NR_028573	ENSMUSG00000092730	Snora24	ACA24	small nucleolar RNA, H/ACA box 24	snoRNA	1.79023739211832	1.73255485483318	2.32561655953006	0.918508363255674	1.13458414684553	1.54220109774074	3.26608654563714	0.923343391049523	0.761241415693469	0.52410054728454	0.948249477177025
Merged-chr5-20256762-4	chr5	20256625	20256825	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170746, intron 6 of 22)	intron (NM_001170746, intron 6 of 22)	349207.0	NM_015823	50791.0	Mm.332231	NM_015823	ENSMUSG00000040003	Magi2	AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705	membrane associated guanylate kinase, WW and PDZ domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-91961568-4	chr5	91961463	91961663	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_073442, intron 1 of 9)	intron (NR_073442, intron 1 of 9)	993.0	NR_073442	68098.0	Mm.159453	NM_026557	ENSMUSG00000029397	Rchy1	ARNIP|CHIMP|Pirh2|Zfp363|Znf363	ring finger and CHY zinc finger domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-125432898-2	chr5	125432798	125432998	+	936.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_203319, intron 1 of 26)	intron (NM_203319, intron 1 of 26)	1150.0	NM_203319	208144.0	Mm.296385	NM_203319	ENSMUSG00000029480	Dhx37	Gm1050|Gm451|mKIAA1517	DEAH (Asp-Glu-Ala-His) box polypeptide 37	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-12781147-2	chr7	12781047	12781247	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5489.0	NM_001017955	232875.0	Mm.333573	NM_001017955	ENSMUSG00000070822	Zscan18	EG232875	zinc finger and SCAN domain containing 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-65774074-4	chr3	65773985	65774185	+	943.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166659, intron 7 of 12)	intron (NM_001166659, intron 7 of 12)	107857.0	NM_001166659	624866.0	Mm.296317	NM_001037923	ENSMUSG00000074579	Lekr1	EG546798|EG624866|Gm6534	leucine, glutamate and lysine rich 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-20649614-2	chr18	20649514	20649714	+	714.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_155534, intron 1 of 2)	MTD|LTR|ERVL-MaLR	-15636.0	NM_013697	22139.0	Mm.2108	NM_013697	ENSMUSG00000061808	Ttr	AA408768|AI787086|D17860|prealbumin	transthyretin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-90877925-2	chr8	90877830	90878030	+	793.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177224, intron 2 of 39)	intron (NM_177224, intron 2 of 39)	49095.0	NM_177224	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	2.61713201336176	1.47977232353433	2.26666408346152	2.92352038294741	2.93550112038086	2.00342052382733	2.28477424306801	3.26748788710075	0.584168926925012	0.496455380056489	0.936846752110373
Merged-chr5-90892494-1	chr5	90892394	90892594	+	615.0	f1_c57bl6.idr	intron (NM_008176, intron 3 of 3)	intron (NM_008176, intron 3 of 3)	1249.0	NM_008176	14825.0	Mm.21013	NM_008176	ENSMUSG00000029380	Cxcl1	Fsp|Gro1|KC|Mgsa|N51|Scyb1|gro	chemokine (C-X-C motif) ligand 1	protein-coding	-0.0378951226769892	0.614863263554999	-0.0258120600678425	0.712342263083653	0.247617821246186	-0.0186370544312059	-0.0245185754181783	-0.0295516560897072	-2.46853458656736	0.27824161372931	1
Merged-chr8-31121094-4	chr8	31120948	31121148	+	906.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175136, intron 2 of 5)	intron (NM_175136, intron 2 of 5)	9202.0	NM_175136	68867.0	Mm.29532	NM_175136	ENSMUSG00000039328	Rnf122	1110063C11Rik	ring finger protein 122	protein-coding	2.48607358475396	3.4439460607987	3.24739592508517	3.45884575466082	3.02252554869953	2.66797487448997	3.58019513323698	3.08429474159831	-0.12990265722737	0.83683098765186	0.998431161219273
Merged-chr8-61608499-2	chr8	61608399	61608599	+	833.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001293772, intron 10 of 21)	B1_Mur1|SINE|Alu	-17330.0	NM_001293774	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-65137934-4	chr6	65137817	65138017	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019455, intron 2 of 5)	intron (NM_019455, intron 2 of 5)	6813.0	NM_019455	54486.0	Mm.410688	NM_019455	ENSMUSG00000029919	Hpgds	H-PGDS|Ptgds2	hematopoietic prostaglandin D synthase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99136375-3	chr7	99136260	99136460	+	723.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 1 of 14)	MER21C|LTR|ERVL	4784.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	0.896527353440572	0.976484973255805	1.20739693281122	0.931405547381325	2.38106988313153	2.20134918871108	1.89105095720271	2.22455123141155	4.80307314829536	0.000384027826927472	0.00898744967648076
Merged-chr4-135883419-3	chr4	135883332	135883532	+	884.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9586.0	NM_026383	52830.0	Mm.29159	NM_026383	ENSMUSG00000028675	Pnrc2	0610011E17Rik|D4Bwg0593e	proline-rich nuclear receptor coactivator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-63826967-4	chr17	63826880	63827080	+	994.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37001.0	NM_001037997	14158.0	Mm.23039	NM_008000	ENSMUSG00000000127	Fer	AV082135|C330004K01Rik|Fert|Fert2	fer (fms/fps related) protein kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-40191268-2	chr9	40191168	40191368	+	889.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1048.0	NR_153114	80902.0	Mm.132196	NM_030713	ENSMUSG00000025602	Zfp202	C130037E22Rik|Znf202	zinc finger protein 202	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167644812-2	chr2	167644712	167644912	+	668.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_145538, exon 5 of 6)	exon (NM_145538, exon 5 of 6)	-12807.0	NM_023230	66589.0	Mm.278783	NM_023230	ENSMUSG00000078923	Ube2v1	0610011J09Rik|AI256840|CROC-1|CROC1|D7Bwg1382e|UEV-1	ubiquitin-conjugating enzyme E2 variant 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-63897391-3	chr4	63897279	63897479	+	623.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36095.0	NM_009403	21949.0	Mm.4664	NM_009403	ENSMUSG00000028362	Tnfsf8	CD153|CD30LG|Cd30l|Tnlg3a	tumor necrosis factor (ligand) superfamily, member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-35122689-2	chr9	35122589	35122789	+	977.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_029475, intron 2 of 5)	intron (NR_029475, intron 2 of 5)	-5825.0	NM_009178	20443.0	Mm.275973	NM_009178	ENSMUSG00000032038	St3gal4	SIAT4-C|ST3Gal IV|ST3GalIV|Siat4c	ST3 beta-galactoside alpha-2,3-sialyltransferase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-63939601-2	chr7	63939501	63939701	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021366)	promoter-TSS (NM_021366)	-686.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	2.44124513257362	2.74287387815926	1.81455254366559	2.68578819290941	2.7558357244241	2.63182657047436	3.07408285103501	3.50494008181085	1.09741002557529	0.134007005886542	0.571666672850202
Merged-chr10-80799703-2	chr10	80799603	80799803	+	691.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013651, intron 1 of 8)	PB1D7|SINE|Alu	968.0	NM_013651	20222.0	Mm.358633	NM_013651	ENSMUSG00000020211	Sf3a2	66kDa|AW047242|PRP11|SFA66|Sap62	splicing factor 3a, subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-9082356-4	chr13	9082269	9082469	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11512.0	NM_001311117	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-25532335-4	chr9	25532211	25532411	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 2 of 7)	intron (NM_026189, intron 2 of 7)	50714.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-6548272-2	chr11	6548172	6548372	+	732.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001190343, intron 1 of 8)	intron (NM_001190343, intron 1 of 8)	1385.0	NM_001190343	216527.0	Mm.221271	NM_146014	ENSMUSG00000000378	Ccm2	BC029157	cerebral cavernous malformation 2	protein-coding	1.42706785060734	1.45506619061473	0.671491767553887	1.1271897310802	1.0721615419971	0.684477369981638	0.673839297239342	1.13386642454458	-1.37575638844939	0.366125705445683	0.861036332257394
Merged-chr14-99047032-2	chr14	99046932	99047132	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175245)	promoter-TSS (NM_175245)	655.0	NM_175265	77744.0	Mm.23503	NM_175265	ENSMUSG00000022070	Bora	6720463M24Rik|AI317232	bora, aurora kinase A activator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-35400593-4	chr8	35400486	35400686	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24845.0	NM_177741	244416.0	Mm.247126	NM_177741	ENSMUSG00000046794	Ppp1r3b	6430576E21|AW821953|GL|PTG	protein phosphatase 1, regulatory (inhibitor) subunit 3B	protein-coding	5.97670875586798	6.21405820861666	6.08660715375537	5.70109527972545	5.21917615175328	5.70194326961159	6.72964427888546	4.64044483202534	-0.240029114547508	0.500218352173193	0.938059363548374
Merged-chr2-83759342-3	chr2	83759232	83759432	+	584.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008402, intron 4 of 29)	intron (NM_008402, intron 4 of 29)	34935.0	NM_008402	16410.0	Mm.227	NM_008402	ENSMUSG00000027087	Itgav	1110004F14Rik|2610028E01Rik|CD51|D430040G12Rik	integrin alpha V	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191821447-4	chr1	191821344	191821544	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010892)	promoter-TSS (NM_010892)	-29.0	NM_010892	18005.0	Mm.33773	NM_010892	ENSMUSG00000026622	Nek2	AA617254|C77054	NIMA (never in mitosis gene a)-related expressed kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-84946210-4	chr1	84946090	84946290	+	998.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11107.0	NM_027921	71781.0	Mm.158754	NM_027921	ENSMUSG00000026220	Slc16a14	1110004H10Rik	solute carrier family 16 (monocarboxylic acid transporters), member 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-29211982-3	chr6	29211865	29212065	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302934, intron 2 of 14)	CpG	332.0	NM_011829	23917.0	Mm.260707	NM_011829	ENSMUSG00000003500	Impdh1	B930086D20Rik|IMPDH-I	inosine monophosphate dehydrogenase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-127568975-2	chr3	127568871	127569071	+	748.083374	f0_c57.idr|f1_c57bl6.idr	intron (NM_197997, intron 7 of 25)	MTC|LTR|ERVL-MaLR	15482.0	NM_197997	71643.0	Mm.274884	NM_197997	ENSMUSG00000051278	Zgrf1	4930422G04Rik|AI448607	zinc finger, GRF-type containing 1	protein-coding	0.911049093068269	-0.0187424136541093	0.162561006432985	0.14483777330367	-0.0360848400160332	0.361737413905789	-0.0234444445306961	-0.0286342149134921	-2.22237276890668	0.300175449437397	1
Merged-chr8-83310055-3	chr8	83309905	83310105	+	902.677795	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19657.0	NM_009463	22227.0	Mm.4177	NM_009463	ENSMUSG00000031710	Ucp1	AI385626|Slc25a7|Ucp	uncoupling protein 1 (mitochondrial, proton carrier)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-45011728-4	chr4	45011622	45011822	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001163284, exon 1 of 2)	5' UTR (NM_001163284, exon 1 of 2)	690.0	NM_001163284	230119.0	Mm.44222	NM_173399	ENSMUSG00000049657	Zbtb5	5930421I10|9430083K24Rik|AI646847|mKIAA0354	zinc finger and BTB domain containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-115000005-4	chr4	114999902	115000102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009185)	promoter-TSS (NM_009185)	-116.0	NM_001304559	20460.0	Mm.3988	NM_009185	ENSMUSG00000028718	Stil	Sil	Scl/Tal1 interrupting locus	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-6872792-1	chr2	6872692	6872892	+	555.0	f0_balb.idr	promoter-TSS (NM_001347094)	promoter-TSS (NM_001347094)	-757.0	NM_001347094	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-77714488-4	chr18	77714393	77714593	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178670)	promoter-TSS (NM_178670)	309.0	NR_027978	67640.0	Mm.482903	NM_026289		4930465K10Rik	-	RIKEN cDNA 4930465K10 gene	ncRNA	0.267770753258496	0.119806990071271	1.08743549123922	1.11243729956977	0.0943452196942644	0.121766207761893	0.112982363240387	0.10538312613412	-4.40547098868603	0.0285523711253528	1
Merged-chr11-121203447-2	chr11	121203363	121203563	+	941.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001001333)	promoter-TSS (NM_001001333)	-970.0	NM_001001333	238023.0	Mm.275130	NM_001001333	ENSMUSG00000039307	Hexdc	BC069960	hexosaminidase (glycosyl hydrolase family 20, catalytic domain) containing	protein-coding	-1.36015291771705	-1.32842431658676	-1.33874579108173	-1.34722415754512	-1.35969949349639	-1.32618761000664	-1.33640923549635	-0.791042329471244	2.42373733289067	0.484013421080845	1
Merged-chr17-83707588-2	chr17	83707488	83707688	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_054082, intron 1 of 16)	B1_Mur4|SINE|Alu	1425.0	NM_001171052	116871.0	Mm.277668	NM_054082	ENSMUSG00000055817	Mta3	1110002J22Rik|mKIAA1266	metastasis associated 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-24297036-3	chr2	24296936	24297136	+	693.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5840.0	NM_153077	215274.0	Mm.218750	NM_153077	ENSMUSG00000046845	Il1f10	-	interleukin 1 family, member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-73723476-2	chr15	73723376	73723576	+	636.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001166390, exon 1 of 5)	exon (NM_001166390, exon 1 of 5)	331.0	NM_001166389	19245.0	Mm.390807	NM_008975	ENSMUSG00000059895	Ptp4a3	AV088979|Prl-3|pPtp4a3	protein tyrosine phosphatase 4a3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-90251233-4	chr9	90251148	90251348	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 1 of 12)	intron (NM_194334, intron 1 of 12)	19521.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-46808452-4	chr11	46808387	46808587	+	831.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2312.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-72307536-4	chr1	72307448	72307648	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009533, exon 1 of 21)	exon (NM_009533, exon 1 of 21)	127.0	NM_001357519	22596.0	Mm.246952	NM_009533	ENSMUSG00000026187	Xrcc5	AI314015|CTC85|CTCBF|Ku80|Ku86	X-ray repair complementing defective repair in Chinese hamster cells 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-31925309-2	chr16	31925209	31925409	+	778.083374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8542.0	NM_172822	239827.0	Mm.440388	NM_172822	ENSMUSG00000045625	Pigz	F630022B06Rik	phosphatidylinositol glycan anchor biosynthesis, class Z	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-146058414-4	chr3	146058333	146058533	+	968.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172864, intron 16 of 22)	intron (NM_172864, intron 16 of 22)	49603.0	NM_172864	242253.0	Mm.235040	NM_172864	ENSMUSG00000043020	Wdr63	4931433A13Rik|IC140|Ida7	WD repeat domain 63	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-32508885-4	chr9	32508786	32508986	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008026, intron 1 of 8)	intron (NM_008026, intron 1 of 8)	32566.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-78114840-3	chr11	78114738	78114938	+	708.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145430, intron 1 of 2)	intron (NM_145430, intron 1 of 2)	20165.0	NM_145430	216971.0	Mm.119387	NM_145430	ENSMUSG00000037750	Fam222b	9630020I17Rik	family with sequence similarity 222, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-45557546-4	chr17	45557440	45557640	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008690, intron 1 of 5)	intron (NM_008690, intron 1 of 5)	1840.0	NM_001304956	18037.0	Mm.57043	NM_008690	ENSMUSG00000023947	Nfkbie	I-kappa-B-epsilon|IKBE|IkB-E|NF-kappa-BIE|ikB-epsilon	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, epsilon	protein-coding	0.71779837208787	0.984387898083497	1.67776403576701	0.565062051451665	0.867719987939513	0.587201407567879	1.0991585442371	0.918716578649535	-0.867260244957554	0.563837807638775	0.960367595640396
Merged-chr15-88857999-2	chr15	88857899	88858099	+	789.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4195.0	NM_145478	223775.0	Mm.400129	NM_145478	ENSMUSG00000035828	Pim3	BC026639|Kid1	proviral integration site 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59868194-2	chr15	59868093	59868293	+	612.583374	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER5|LTR|ERV1	-73234.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-23927923-1	chr16	23927823	23928023	+	647.5	f0_balb.idr	intron (NM_001008230, intron 1 of 1)	intron (NM_001008230, intron 1 of 1)	2871.0	NM_001008230	224055.0	Mm.39248	NM_001008230	ENSMUSG00000047531	Rtp2	Gm605	receptor transporter protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-108387796-4	chr4	108387683	108387883	+	883.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4128.0	NM_001099303	545667.0	Mm.380025	NM_001099303	ENSMUSG00000059816	Fam159a	Shisal2a	family with sequence similarity 159, member A	protein-coding	1.62179870813021	2.29181534026362	2.00579572584409	2.05374470520846	1.63403524404507	1.20845990962542	1.89946715791556	1.84221454856555	-0.99285172010989	0.333166766635332	0.833588530395671
Merged-chr16-91480682-3	chr16	91480570	91480770	+	859.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-4545.0	NM_010508	15975.0	Mm.502	NM_010508	ENSMUSG00000022967	Ifnar1	Ifar|Ifnar|Ifrc|Infar	interferon (alpha and beta) receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-108049986-2	chr9	108049886	108050086	+	996.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_177910, intron 3 of 8)	intron (NM_177910, intron 3 of 8)	722.0	NM_001357682	331026.0	Mm.22554	NM_177910	ENSMUSG00000070284	Gmppb	AI317178|E430010H19	GDP-mannose pyrophosphorylase B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10678685-3	chr19	10678596	10678796	+	859.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021453)	promoter-TSS (NM_021453)	-625.0	NM_021453	58803.0	Mm.34037	NM_021453	ENSMUSG00000024738	Pga5	1110035E17Rik|Pepf	pepsinogen 5, group I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-135544975-4	chr1	135544876	135545076	+	959.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173437, intron 1 of 28)	intron (NM_173437, intron 1 of 28)	40379.0	NM_173437	215690.0	Mm.34977	NM_173437	ENSMUSG00000009418	Nav1	9530089B19|9930003A20Rik|C230080M11Rik|Gm38399|Pomfil3|Unc53h1|mKIAA1151|steerin-1	neuron navigator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-121365463-3	chr10	121365344	121365544	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029364, intron 1 of 13)	CpG	354.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-122163941-4	chr2	122163848	122164048	+	993.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080510, intron 1 of 6)	intron (NM_080510, intron 1 of 6)	3248.0	NM_080510	70928.0	Mm.379188	NM_080510	ENSMUSG00000033368	Trim69	4921519C19Rik|Rnf36|Trif|Trimless	tripartite motif-containing 69	protein-coding	4.67015643341429	4.74289639199278	4.59367761756845	4.7821142996686	5.53232116298716	4.87343136774534	4.52249945810254	5.15095753807589	0.462274313864345	0.183332284630266	0.658116185534174
Merged-chr17-23630418-3	chr17	23630322	23630522	+	950.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001320258, exon 10 of 10)	3' UTR (NM_001320258, exon 10 of 10)	14847.0	NM_001033339	240047.0	Mm.235343	NM_001033339	ENSMUSG00000023903	Mmp25	F730048C11Rik|Leukolysin|MMP20|MT6-MMP	matrix metallopeptidase 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-27560318-2	chr7	27560218	27560418	+	814.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001122767)	promoter-TSS (NM_001122767)	-158.0	NM_001122767	66367.0	Mm.29831	NM_175107	ENSMUSG00000049643	2310022A10Rik	-	RIKEN cDNA 2310022A10 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72409435-2	chr6	72409335	72409535	+	667.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4|SINE|ID	-4873.0	NM_019802	56316.0	Mm.19937	NM_019802	ENSMUSG00000053460	Ggcx	-	gamma-glutamyl carboxylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-121423639-4	chr14	121423537	121423737	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44407.0	NM_145465	223255.0	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-118310530-2	chr1	118310430	118310630	+	781.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011650, intron 1 of 5)	intron (NM_011650, intron 1 of 5)	198.0	NR_153836	22099.0	Mm.426637	NM_011650	ENSMUSG00000026374	Tsn	2610034C24Rik|AU040286|C3PO|TB-RBP	translin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115260511-4	chr5	115260412	115260612	+	991.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302449, intron 1 of 16)	intron (NM_001302449, intron 1 of 16)	12383.0	NM_001302448	50849.0	Mm.30051	NM_016698	ENSMUSG00000041740	Rnf10	AA675014|RIE2|mKIAA0262	ring finger protein 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-156680878-4	chr1	156680749	156680949	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_145413, exon 8 of 8)	3' UTR (NM_145413, exon 8 of 8)	-6510.0	NM_023141	30935.0	Mm.206737	NM_023141	ENSMUSG00000060519	Tor3a	Adir	torsin family 3, member A	protein-coding	5.92269270797492	6.09327098707312	6.26521765530586	6.12460402967033	7.0483875024537	7.35002240131532	7.42340409753135	6.90335490934681	1.16199131797913	3.67450583793144e-09	5.00985466403425e-07
Merged-chr5-38079902-1	chr5	38079802	38080002	+	614.0	f1_c57bl6.idr	intron (NM_001359398, intron 1 of 9)	intron (NM_001359398, intron 1 of 9)	40672.0	NM_026959	71116.0	Mm.18959	NM_026959	ENSMUSG00000029125	Stx18	1810035L21Rik|4933425D03Rik|AU041562	syntaxin 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-42340333-4	chr6	42340264	42340464	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19C|LTR|ERVK	-9464.0	NM_001289619	22793.0	Mm.282303	NM_011777	ENSMUSG00000029860	Zyx	9530098H06Rik|R75157	zyxin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-58460062-2	chr13	58459962	58460162	+	729.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger10|DNA|TcMar-Tigger	-56719.0	NM_001301341	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140663136-6	chr5	140663053	140663253	+	786.111084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_028833)	TTS (NM_028833)	-14122.0	NM_175274	78339.0	Mm.28947	NM_175274	ENSMUSG00000036565	Ttyh3	2900029G13Rik|AI414930|TTY3|mTTY3	tweety family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-53001316-3	chr2	53001207	53001407	+	613.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	MER119|DNA|hAT-Charlie	143439.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114802127-2	chr11	114802027	114802227	+	558.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_181749, intron 1 of 2)	ORR1C2|LTR|ERVL-MaLR	3203.0	NM_181749	217302.0	Mm.269127	NM_181749	ENSMUSG00000034677	Gpr142	PGR2	G protein-coupled receptor 142	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-74282045-2	chr1	74281945	74282145	+	638.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001190444, exon 5 of 11)	exon (NM_001190444, exon 5 of 11)	2693.0	NM_001190444	227290.0	Mm.379371	NM_146110	ENSMUSG00000006299	Aamp	AU040907|Aamp-rs	angio-associated migratory protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-132028889-2	chr2	132028789	132028989	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175445, intron 1 of 10)	intron (NM_175445, intron 1 of 10)	1099.0	NM_175445	215653.0	Mm.204737	NM_175445	ENSMUSG00000027339	Rassf2	3830431H01Rik|9030412M04Rik|AI852669|AW495050	Ras association (RalGDS/AF-6) domain family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-13004412-1	chr11	13004312	13004512	+	647.0	f1_c57bl6.idr	Intergenic	Lx2B2|LINE|L1	-539452.0	NM_001282993	12808.0	Mm.22847	NM_172496	ENSMUSG00000020173	Cobl	-	cordon-bleu WH2 repeat	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-46999870-4	chr14	46999766	46999966	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037221, intron 2 of 12)	intron (NM_001037221, intron 2 of 12)	-1474.0	NM_001163433	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-88529015-4	chr17	88528920	88529120	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-1104.0	NM_028658	73825.0	Mm.271817	NM_028658	ENSMUSG00000034709	Ppp1r21	1110018J12Rik|AI426045|AW550781|Ccdc128|Klraq1	protein phosphatase 1, regulatory subunit 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-25330435-2	chr2	25330335	25330535	+	591.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_027448, intron 1 of 1)	B2_Mm2|SINE|B2	2136.0	NR_027448	100272219.0	Mm.382103	NR_027448	ENSMUSG00000097345	AA543186	-	expressed sequence AA543186	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-57537725-6	chr9	57537642	57537842	+	885.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001166364, exon 1 of 5)	exon (NM_001166364, exon 1 of 5)	214.0	NM_001166364	78323.0	Mm.25814	NM_175273	ENSMUSG00000032305	Fam219b	2310046O06Rik|AI594866	family with sequence similarity 219, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-25181135-1	chr2	25181035	25181235	+	650.0	f0_balb.idr	exon (NM_025980, exon 1 of 1)	exon (NM_025980, exon 1 of 1)	377.0	NM_025980	67122.0	Mm.46539	NM_025980	ENSMUSG00000078202	Nrarp	2700054M22Rik	Notch-regulated ankyrin repeat protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-34843403-1	chr19	34843303	34843503	+	612.0	f1_balb.idr	intron (NM_001114339, intron 1 of 6)	B1_Mus2|SINE|Alu	-22630.0	NR_029783	723826.0		NR_029783	ENSMUSG00000065594	Mir107	Mirn107|mir-107|mmu-mir-107	microRNA 107	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-136716277-4	chr6	136716186	136716386	+	976.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145067, intron 18 of 25)	intron (NM_145067, intron 18 of 25)	-54393.0	NM_025806	66857.0	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	4.44117045495222	3.90627346441634	3.85003284945611	5.18064465437482	3.04014134869644	4.74968354336109	2.93335072164551	3.42260646749782	-0.948517121578679	0.0914091373836905	0.467487992467825
Merged-chr8-31981051-1	chr8	31980951	31981151	+	816.666687	f0_balb.idr	Intergenic	Intergenic	-62848.0	NM_178591	211323.0	Mm.153432	NM_178591	ENSMUSG00000062991	Nrg1	6030402G23Rik|ARIA|D230005F13Rik|GGF|GGFII|HRG|HRGalpha|Hgl|NDF|SMDF	neuregulin 1	protein-coding	-0.131270593860067	-0.116281697930028	-0.121195212373933	-0.124984111056168	-0.130335684280126	0.242904860580992	0.453495132616409	0.410380637717282	3.87275553772528	0.0892365036143118	1
Merged-chr17-35128905-2	chr17	35128864	35129064	+	770.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_018816)	TTS (NM_018816)	2562.0	NM_033477	114585.0	Mm.42070	NM_033477	ENSMUSG00000043311	D17H6S53E	G4|NG34	DNA segment, Chr 17, human D6S53E	protein-coding	-0.0575046185065595	0.208496030164046	-0.0393855632996626	-0.0461166606936349	-0.0557930488627014	1.23291330760854	-0.03747834819778	0.48433864066327	3.52924181434668	0.0951845901906412	1
Merged-chr13-52025610-2	chr13	52025510	52025710	+	652.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-71131.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-92866778-2	chr7	92866678	92866878	+	830.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355126, intron 2 of 5)	intron (NM_001355126, intron 2 of 5)	7469.0	NM_001355126	74041.0	Mm.26468	NM_028729	ENSMUSG00000030641	Ddias	4632434I11Rik|noxin	DNA damage-induced apoptosis suppressor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-66005942-2	chr5	66005842	66006042	+	767.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2B|LTR|ERVL	-1657.0	NR_027961	231253.0	Mm.436542	NM_177679	ENSMUSG00000054598	9130230L23Rik	-	RIKEN cDNA 9130230L23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117477800-2	chr8	117477700	117477900	+	940.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18535.0	NR_106046	102465653.0		NR_106046	ENSMUSG00000098483	Mir7078	Gm27386|mmu-mir-7078	microRNA 7078	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-30764342-4	chr16	30764244	30764444	+	846.974976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	164621.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-15583276-3	chr17	15583164	15583364	+	821.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19941.0	NM_144809	213389.0	Mm.215162	NM_144809	ENSMUSG00000051977	Prdm9	BC012016|Dsbc1|G1-419-29|Meisetz|PRDM9-B|Rcr1|repro7	PR domain containing 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139017609-1	chr5	139017509	139017709	+	963.0	f0_c57.idr	3' UTR (NM_001253890, exon 11 of 11)	3' UTR (NM_001253890, exon 11 of 11)	-22656.0	NM_008808	18590.0	Mm.2675	NM_008808	ENSMUSG00000025856	Pdgfa	-	platelet derived growth factor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-122615834-4	chr10	122615747	122615947	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-32492.0	NR_105839	102465223.0		NR_105839	ENSMUSG00000098522	Mir6412	Gm27364|mmu-mir-6412	microRNA 6412	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30416925-2	chr2	30416825	30417025	+	680.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_138748, intron 1 of 9)	intron (NM_138748, intron 1 of 9)	875.0	NM_138748	110854.0	Mm.275393	NM_138748	ENSMUSG00000039515	Ptpa	2610042B21Rik|C77440|N28142|PR53|Ppp2r4	protein phosphatase 2 protein activator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-84100802-4	chr17	84100692	84100892	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22132.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-22809581-4	chr11	22809489	22809689	+	972.883301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50146.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-95836444-2	chr11	95836344	95836544	+	909.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025659, intron 2 of 7)	intron (NM_025659, intron 2 of 7)	-5851.0	NM_023121	14710.0	Mm.46299	NM_023121	ENSMUSG00000038811	Gngt2	AV096488	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-128775551-2	chr4	128775451	128775651	+	574.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081098, intron 8 of 8)	ORR1B1|LTR|ERVL-MaLR	16293.0	NM_001009819	215493.0	Mm.300900	NM_001009819	ENSMUSG00000028794	A3galt2	Gm433|iGb3|iGb3S	alpha 1,3-galactosyltransferase 2 (isoglobotriaosylceramide synthase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-20763423-3	chr10	20763325	20763525	+	902.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38347.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-110447386-4	chr5	110447290	110447490	+	827.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001317042, intron 1 of 2)	intron (NM_001317042, intron 1 of 2)	1113.0	NM_001317042	381668.0	Mm.348782	NM_028596	ENSMUSG00000043323	Fbrsl1	2410025L10Rik|AI467568|Gm1049|Gm29766|mKIAA1545	fibrosin-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-130673583-2	chr7	130673483	130673683	+	585.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_206856, intron 3 of 20)	intron (NM_206856, intron 3 of 20)	-18973.0	NM_001347637	57752.0	Mm.86322	NM_021314	ENSMUSG00000030852	Tacc2	mKIAA4180	transforming, acidic coiled-coil containing protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-24638929-3	chr10	24638803	24639003	+	728.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008813, exon 25 of 25)	3' UTR (NM_008813, exon 25 of 25)	43461.0	NM_010217	14219.0	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132030208-4	chr4	132030061	132030261	+	956.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183428, intron 1 of 20)	L1MC5|LINE|L1	18917.0	NM_001128606	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-80420792-2	chr18	80420692	80420892	+	627.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026295, intron 11 of 12)	intron (NM_026295, intron 11 of 12)	48875.0	NM_026295	67655.0	Mm.312893	NM_026295	ENSMUSG00000033323	Ctdp1	4930563P03Rik|AW553592	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-8834580-2	chr16	8834480	8834680	+	586.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081400, intron 2 of 3)	intron (NM_001081400, intron 2 of 3)	4480.0	NM_001081400	69053.0	Mm.390868	NM_001081400	ENSMUSG00000022507	1810013L24Rik	1110017P05Rik|3010002C02Rik|AA792997|AW124177|Gm19906|R74903	RIKEN cDNA 1810013L24 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-51072694-1	chr2	51072594	51072794	+	633.0	f0_balb.idr	Intergenic	Intergenic	76417.0	NM_028810	74194.0	Mm.46497	NM_028810	ENSMUSG00000017144	Rnd3	2610017M01Rik|AI661404|Arhe|Rhoe	Rho family GTPase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-43186775-1	chr12	43186675	43186875	+	542.0	f1_balb.idr	Intergenic	L1_Mus4|LINE|L1	-152558.0	NR_148724	102636207.0		NR_148724		Gm33340	Gm40882	predicted gene, 33340	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-43921581-3	chr2	43921475	43921675	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301831, intron 6 of 14)	intron (NM_001301831, intron 6 of 14)	143749.0	NR_040622	320872.0	Mm.445023	NR_040622	ENSMUSG00000085089	Arhgap15os	A430092G05Rik	Rho GTPase activating protein 15, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-27021876-2	chr8	27021776	27021976	+	797.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1923.0	NM_153592	244373.0	Mm.277699	NM_153592	ENSMUSG00000031483	Erlin2	BC036333|C87251|Spfh2	ER lipid raft associated 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-9536865-2	chr11	9536765	9536965	+	722.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178259, intron 47 of 61)	intron (NM_178259, intron 47 of 61)	344923.0	NM_178259	268379.0	Mm.39270	NM_178259	ENSMUSG00000004668	Abca13	9830132L24|A930002G16Rik|AI956815	ATP-binding cassette, sub-family A (ABC1), member 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-152152002-2	chr4	152151902	152152102	+	879.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_207687, exon 1 of 16)	exon (NM_207687, exon 1 of 16)	205.0	NM_207687	56226.0	Mm.264215	NM_019585	ENSMUSG00000028943	Espn	je	espin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33751748-4	chr16	33751646	33751846	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175256, intron 12 of 14)	intron (NM_175256, intron 12 of 14)	-42291.0	NM_010739	17063.0	Mm.3177	NM_010739	ENSMUSG00000022824	Muc13	114/A10|14/A10|AI159736|Lrrp|Ly64|NJ-1	mucin 13, epithelial transmembrane	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118705755-4	chr9	118705638	118705838	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 15 of 27)	MTD|LTR|ERVL-MaLR	-5954.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	5.28937856008826	5.66630719784469	5.08782635839446	6.45199250595542	4.64278455674927	4.54950644929289	4.63134050308354	6.12478351690238	-0.633152435752909	0.121794185512792	0.547245267450283
Merged-chr10-119055422-4	chr10	119055297	119055497	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4898.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-103364419-2	chr15	103364319	103364519	+	910.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001314041, intron 1 of 30)	intron (NM_001314041, intron 1 of 30)	2372.0	NM_010577	16402.0	Mm.16234	NM_010577	ENSMUSG00000000555	Itga5	Cd49e|Fnra|VLA5	integrin alpha 5 (fibronectin receptor alpha)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-42398469-4	chr6	42398391	42398591	+	743.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-1747.0	NM_001001452	387514.0	Mm.377921	NM_001001452	ENSMUSG00000046652	Tas2r143	Gm1404|Tas2r43|mt2r36	taste receptor, type 2, member 143	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-104119084-2	chr8	104118984	104119184	+	561.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_009868, intron 2 of 11)	intron (NM_009868, intron 2 of 11)	-13211.0	NR_131138	546096.0	Mm.252264	NR_131138	ENSMUSG00000110053	Gm29682	Gm45664	predicted gene, 29682	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-9871834-2	chr13	9871734	9871934	+	803.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC-int|LTR|ERVL-MaLR	-106513.0	NM_144516	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-70148909-1	chr12	70148809	70149009	+	673.0	f1_balb.idr	Intergenic	Intergenic	-5262.0	NM_001195033	100504285.0	Mm.291105	NM_001195033	ENSMUSG00000090121	Abhd12b	Gm804	abhydrolase domain containing 12B	protein-coding	-0.256795646099043	-0.48926706593346	-0.330861103408081	-0.494829321697916	-0.0574297731543298	-0.307904778767758	-0.49172304862406	-0.494408606123121	0.753951868721948	0.761575722028303	1
Merged-chr13-110558065-3	chr13	110557959	110558159	+	624.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	163015.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127061765-2	chr10	127061665	127061865	+	599.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-1581.0	NM_001033262	216438.0	Mm.37892	NM_001033262	ENSMUSG00000040502	March9	AI608492|BC019560	membrane-associated ring finger (C3HC4) 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-17755922-2	chr18	17755822	17756022	+	746.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-174932.0	NR_045374	75162.0	Mm.60874	NR_045374		4930545E07Rik	-	RIKEN cDNA 4930545E07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141622615-1	chr7	141622515	141622715	+	542.0	f1_c57bl6.idr	intron (NM_001357068, intron 14 of 21)	B1_Mus1|SINE|Alu	1914.0	NR_106030	102466798.0		NR_106030	ENSMUSG00000098759	Mir7063	Gm27654|mmu-mir-7063	microRNA 7063	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-87274551-4	chr3	87274443	87274643	+	753.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11019.0	NM_030707	80891.0	Mm.45173	NM_030707	ENSMUSG00000015852	Fcrls	2810439C17Rik|9330158F12|FcRH2sc|Fcrh2|IFGP2|IgSR|MMAN-g|Msr2|moFcRH2sc	Fc receptor-like S, scavenger receptor	protein-coding	3.92622308921851	4.11001264118826	3.33683764040871	2.80312020158752	2.66729707801128	4.43845976285784	2.23259922931064	3.256715046789	-0.310671335876018	0.645716493571305	0.984116759910594
Merged-chr11-9117991-4	chr11	9117890	9118090	+	716.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159402)	promoter-TSS (NM_001159402)	-18.0	NM_001159401	22271.0	Mm.4610	NM_009477	ENSMUSG00000020407	Upp1	AI325217|UPase|UdRPase|Up|Upp	uridine phosphorylase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-4346313-4	chr2	4346213	4346413	+	811.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172475, intron 1 of 22)	intron (NM_172475, intron 1 of 22)	-54663.0	NM_001177843	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67608269-4	chr10	67608153	67608353	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36294.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-25151343-1	chr9	25151243	25151443	+	1000.0	f0_c57.idr	5' UTR (NM_020586, exon 1 of 8)	5' UTR (NM_020586, exon 1 of 8)	438.0	NM_020586	80517.0	Mm.142843	NM_020586	ENSMUSG00000008429	Herpud2	5031400M07Rik|AB041580	HERPUD family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-93808559-2	chr16	93808459	93808659	+	553.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357118, intron 34 of 35)	L1ME1|LINE|L1	-13658.0	NR_151466	102633000.0	Mm.443436	NR_151466		2310043M15Rik	-	RIKEN cDNA 2310043M15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-9555237-2	chr18	9555137	9555337	+	862.416626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	64232.0	NM_007593	26369.0	Mm.195831	NM_007593	ENSMUSG00000050996	Cetn1	caltractin	centrin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-120492177-2	chr9	120492077	120492277	+	788.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026892)	promoter-TSS (NM_026892)	-429.0	NM_026892	68969.0	Mm.28753	NM_026892	ENSMUSG00000006941	Eif1b	1500010M16Rik|3110001N14Rik|Gc20	eukaryotic translation initiation factor 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-31050351-2	chr6	31050251	31050451	+	553.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT2D|LTR|ERVL	12396.0	NR_029744	387222.0		NR_029744	ENSMUSG00000065610	Mir29a	Mirn29a|mir-29a|mmu-mir-29a	microRNA 29a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-8635843-2	chr11	8635743	8635943	+	737.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 1 of 30)	intron (NM_001083587, intron 1 of 30)	28692.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3680953-2	chr4	3680853	3681053	+	623.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 1 of 12)	intron (NM_001111096, intron 1 of 12)	2832.0	NM_010747	17096.0	Mm.317331	NM_010747	ENSMUSG00000042228	Lyn	AA407514|Hck-2|p53Lyn|p56Lyn	LYN proto-oncogene, Src family tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-166843561-3	chr1	166843498	166843698	+	838.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	156132.0	NR_037988	100503962.0	Mm.216842	NR_037988	ENSMUSG00000102548	Gm16701	-	predicted gene, 16701	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41264071-4	chr19	41263944	41264144	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133352)	promoter-TSS (NM_133352)	-40.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-67355510-2	chr15	67355396	67355596	+	687.5	f0_balb.idr|f1_balb.idr	intron (NR_045140, intron 7 of 8)	MIR|SINE|MIR	128727.0	NR_045140	69334.0	Mm.63770	NR_045140	ENSMUSG00000102069	1700012I11Rik	-	RIKEN cDNA 1700012I11 gene	ncRNA	3.20341886338233	4.03204073938265	1.91960181766216	1.56539165420119	3.51421219201073	4.32891154662682	3.87065702355218	3.69182549401451	1.24752005115475	0.0837471703077738	0.443684964388874
Merged-chr6-139331417-1	chr6	139331317	139331517	+	541.0	f1_balb.idr	Intergenic	B4A|SINE|B4	-8841.0	NR_045149	70962.0	Mm.410833	NR_045149	ENSMUSG00000108128	4922502N22Rik	-	RIKEN cDNA 4922502N22 gene	ncRNA	-0.131583980967465	-0.116192144479804	-0.121233203817895	0.301542575217522	-0.130622709157904	-0.115055959287293	0.213441468773466	0.601433825907754	1.47358787198035	0.529000534124718	1
Merged-chr19-5650909-2	chr19	5650809	5651009	+	737.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001164482)	TTS (NM_001164482)	12798.0	NM_001164482	20469.0	Mm.3072	NM_011379	ENSMUSG00000056917	Sipa1	Spa1	signal-induced proliferation associated gene 1	protein-coding	-1.14149542847138	-0.33100028091332	-1.12720875772362	-1.13728867753953	-1.14086750656251	-1.11193125150289	-1.12436624874263	-1.1356767669541	-2.98824766641611	0.369648585513947	1
Merged-chr11-99043154-4	chr11	99043048	99043248	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010517, intron 1 of 3)	intron (NM_010517, intron 1 of 3)	1904.0	NM_010517	16010.0	Mm.233799	NM_010517	ENSMUSG00000017493	Igfbp4	AI875747|Deb2|IBP-4|IGFBP-4	insulin-like growth factor binding protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-104442943-4	chr8	104442829	104443029	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001013380, exon 1 of 13)	5' UTR (NM_001013380, exon 1 of 13)	118.0	NM_001013380	234663.0	Mm.289583	NM_001013380	ENSMUSG00000035770	Dync1li2	AA409702|C920003I06|Dncli2|Dnclic2|LIC2	dynein, cytoplasmic 1 light intermediate chain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-47813071-2	chr1	47812971	47813171	+	575.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR19A|LTR|ERVK	-345946.0	NR_105768	102466969.0		NR_105768	ENSMUSG00000098876	Mir6350	Gm27958|mmu-mir-6350	microRNA 6350	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-102257239-2	chr15	102257139	102257339	+	674.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011244, intron 1 of 9)	CpG	283.0	NM_011244	19411.0	Mm.1273	NM_011244	ENSMUSG00000001288	Rarg	Nr1b3|RAR-gamma|RARD|RARgamma2	retinoic acid receptor, gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-75919582-1	chr6	75919482	75919682	+	540.0	f1_balb.idr	Intergenic	Lx3A|LINE|L1	-1322895.0	NR_155299	74342.0	Mm.292568	NM_028880	ENSMUSG00000060780	Lrrtm1	4632401D06Rik|AW125451	leucine rich repeat transmembrane neuronal 1	protein-coding	-1.1373882097986	-1.25072181621019	-1.10358334894958	-1.26891050250677	-1.01052543487044	-1.24855782160973	-1.25844715736982	-1.26744221463098	-0.0304936902749621	0.992362352355808	1
Merged-chr9-64774528-4	chr9	64774418	64774618	+	925.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36493.0	NM_001162917	102442.0	Mm.222473	NM_176935	ENSMUSG00000053641	Dennd4a	AI115600|AI851943|F730015K02Rik	DENN/MADD domain containing 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-52283399-3	chr11	52283294	52283494	+	724.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001313981)	promoter-TSS (NM_001313981)	-380.0	NM_001313981	21414.0	Mm.31630	NM_009331	ENSMUSG00000000782	Tcf7	AI465550|TCF-1|Tcf1	transcription factor 7, T cell specific	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-5579597-4	chr2	5579507	5579707	+	968.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290374, intron 1 of 9)	intron (NM_001290374, intron 1 of 9)	96439.0	NM_001290376	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	2.00634377326912	2.50027207201226	2.02066276093563	1.60890393622874	2.66826567619874	2.72926550916394	2.31767571155978	2.36168007155138	1.08560142746351	0.199227768538817	0.682952790551064
Merged-chr9-87255496-4	chr9	87255410	87255610	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199316)	promoter-TSS (NM_199316)	22.0	NM_199316	382090.0	Mm.335338	NM_199316	ENSMUSG00000056919	Cep162	4922501C03Rik|mKIAA1009	centrosomal protein 162	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-123057301-2	chr10	123057201	123057401	+	649.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163024, intron 2 of 34)	B2_Mm2|SINE|B2	19204.0	NM_001163024	67074.0	Mm.169924	NM_153395	ENSMUSG00000034602	Mon2	2610528O22Rik|AW495628|Sf21|mKIAA1040	MON2 homolog, regulator of endosome to Golgi trafficking	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-55115017-4	chr3	55114908	55115108	+	876.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001144987, intron 1 of 8)	intron (NM_001144987, intron 1 of 8)	2842.0	NM_001144987	229285.0	Mm.235523	NM_144895	ENSMUSG00000036580	Spg20	AI840044|C79168|SPARTIN|Spart|TAHCCP1|mKIAA0610	spastic paraplegia 20, spartin (Troyer syndrome) homolog (human)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127584731-2	chr10	127584631	127584831	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008512, exon 16 of 89)	exon (NM_008512, exon 16 of 89)	36417.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126573862-2	chr8	126573762	126573962	+	560.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19574.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	1.1881661411074	0.651467159461694	1.31676644828342	0.999506556941801	0.612240582487164	0.654459221344601	1.89314562401582	1.00545043859159	0.440483735837722	0.770964255074243	0.998431161219273
Merged-chr3-133542242-4	chr3	133542134	133542334	+	982.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040400, intron 1 of 10)	intron (NM_001040400, intron 1 of 10)	2156.0	NM_001040400	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-87521425-4	chr6	87521289	87521489	+	972.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037727, intron 1 of 10)	ORR1F|LTR|ERVL-MaLR	11870.0	NM_001037727	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	1.58036411119552	1.09396756364014	1.43467844456678	1.77559796590294	1.05539797138727	2.30755672304675	1.44444906225142	1.88432538352476	0.967262269107285	0.428964387332698	0.903416445927044
Merged-chr6-117932768-2	chr6	117932668	117932868	+	869.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001173372)	TTS (NM_001173372)	4567.0	NM_001173372	108017.0	Mm.250392	NM_033648	ENSMUSG00000004988	Fxyd4	0610008I02Rik|AI267073|Chif	FXYD domain-containing ion transport regulator 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-136136104-4	chr5	136136006	136136206	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347492)	promoter-TSS (NM_001347492)	-32.0	NM_027891	71735.0	Mm.425292	NM_027891	ENSMUSG00000029703	Lrwd1	1200011O22Rik|AU042569|AW548074|Orca	leucine-rich repeats and WD repeat domain containing 1	protein-coding	5.33751505641235	4.70811773437663	5.5855020093681	5.40504115421993	3.19595239744522	5.67501183923078	4.64280521622241	5.29348285749494	-0.393284630084243	0.369238783973722	0.863136285888838
Merged-chr11-69846513-4	chr11	69846407	69846607	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023564)	promoter-TSS (NM_023564)	-110.0	NM_023564	70310.0	Mm.28874	NM_023564	ENSMUSG00000019461	Plscr3	2210403O21Rik|2610037N06Rik|ESTM3|X83310	phospholipid scramblase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-30781222-4	chr10	30781125	30781325	+	910.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358842, intron 1 of 14)	intron (NM_001358842, intron 1 of 14)	22101.0	NM_001358841	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	0.186795177610403	0.207685249954804	0.200869573139565	0.845994515453242	0.188106998613394	0.851082360060698	0.681331233527509	0.369965695493252	0.909262115581996	0.64505164164719	1
Merged-chr1-39585633-3	chr1	39585526	39585726	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-8279.0	NM_001033135	67702.0	Mm.28614	NM_001033135	ENSMUSG00000048234	Rnf149	1600023E10Rik|AV037261|C76763|Gm15832|Greul4	ring finger protein 149	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46143643-4	chr8	46143576	46143776	+	822.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19530.0	NM_207213	102141.0	Mm.267258	NM_207213	ENSMUSG00000038291	Snx25	AI661919|Gm1699|Gm173|Sbbi31	sorting nexin 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-10229776-4	chr18	10229665	10229865	+	955.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47973.0	NM_009071	19877.0	Mm.6710	NM_009071	ENSMUSG00000024290	Rock1	1110055K06Rik|Rock-I	Rho-associated coiled-coil containing protein kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-26593564-5	chr11	26593444	26593644	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027260, intron 1 of 12)	CpG	376.0	NM_027260	69922.0	Mm.285351	NM_027260	ENSMUSG00000064090	Vrk2	2810003O05Rik|AI447698	vaccinia related kinase 2	protein-coding	4.35231390337981	2.23414780993123	5.25818657458483	4.25075656553352	4.26133493802057	3.21679351363562	4.59046526110638	4.04885166241552	-0.349135613113775	0.553809632094567	0.959833585208582
Merged-chr3-116804679-2	chr3	116804580	116804780	+	748.0	f0_c57.idr|f1_c57bl6.idr	intron (NM_001362367, intron 2 of 27)	intron (NM_001362367, intron 2 of 27)	3486.0	NM_001362367	77559.0	Mm.237099	NM_001081326	ENSMUSG00000033400	Agl	1110061O17Rik|9430004C13Rik|9630046L06Rik|AI850929|C77197	amylo-1,6-glucosidase, 4-alpha-glucanotransferase	protein-coding	-1.20406370813143	-1.56956373024278	-1.57884638916872	-1.58647144159385	-1.598104728449	-1.56755213932999	-1.57674499865798	-1.58510656085539	-1.70745470802464	0.626337835847419	1
Merged-chr18-44386120-2	chr18	44386020	44386220	+	723.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027490, intron 1 of 10)	intron (NM_027490, intron 1 of 10)	5620.0	NM_027490	70640.0	Mm.87629	NM_027490	ENSMUSG00000024472	Dcp2	2410015D23Rik|5730537H01Rik|AL118268	decapping mRNA 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-59219546-4	chr3	59219432	59219632	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357010, intron 3 of 3)	intron (NM_001357010, intron 3 of 3)	-8650.0	NM_028808	74191.0	Mm.90067	NM_028808	ENSMUSG00000036362	P2ry13	2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174	purinergic receptor P2Y, G-protein coupled 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-131246822-3	chr3	131246715	131246915	+	761.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008212, intron 3 of 7)	intron (NM_008212, intron 3 of 7)	25286.0	NM_008212	15107.0	Mm.260164	NM_008212	ENSMUSG00000027984	Hadh	AA409008|AU019341|AW742602|HCDH|Hadhsc|Schad	hydroxyacyl-Coenzyme A dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-17006928-2	chr12	17006803	17007003	+	623.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001201333, intron 3 of 3)	intron (NM_001201333, intron 3 of 3)	4824.0	NM_001201332	73667.0	Mm.159048	NM_001201332	ENSMUSG00000071398	2410004P03Rik	-	RIKEN cDNA 2410004P03 gene	protein-coding	0.354849089240712	0.773099704479532	1.10753142063228	1.23946438494226	0.356612459569396	0.781550327753432	0.375640101229794	0.367859150321505	-2.7457205010904	0.143608503230864	1
Merged-chr17-34397476-2	chr17	34397376	34397576	+	765.083374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1344.0	NM_001001177	407788.0	Mm.73205	NM_001001177	ENSMUSG00000057246	BC051142	NG8|TSBP|Tesb|Tesbp	cDNA sequence BC051142	protein-coding	1.14598644634039	1.3495327170573	1.28839224830113	2.35747179703226	3.54160285993321	4.11231039265948	2.86214058423837	3.95172701528351	4.04561797331753	7.71224317798282e-06	0.000370125974597751
Merged-chr10-42055490-2	chr10	42055390	42055590	+	696.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR11A2|LTR|ERVK	-37108.0	NM_001034858	213402.0	Mm.211320	NM_001034858	ENSMUSG00000071324	Armc2	2610018I05Rik	armadillo repeat containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-125596607-4	chr7	125596519	125596719	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4|LINE|L1	-6810.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	3.38574623960766	4.49213083343193	2.5087937847817	4.10912065541379	3.25764123263487	3.46786119439052	3.84471830609173	3.66106805816314	-0.357798411659695	0.53801908398816	0.953963493057627
Merged-chr3-90005251-4	chr3	90005240	90005440	+	713.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001165988)	TTS (NM_001165988)	5870.0	NR_106129	102465771.0		NR_106129	ENSMUSG00000098397	Mir7669	Gm27996|mmu-mir-7669	microRNA 7669	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-42822760-2	chr13	42822660	42822860	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001005740, intron 1 of 12)	intron (NM_001005740, intron 1 of 12)	-43487.0	NM_001302636	218194.0	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83152031-1	chr6	83151931	83152131	+	762.0	f1_c57bl6.idr	TTS (NM_023790)	TTS (NM_023790)	4348.0	NM_001362120	75659.0	Mm.130665	NM_023790	ENSMUSG00000030032	Wdr54	1700030E05Rik	WD repeat domain 54	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-10342721-4	chr3	10342633	10342833	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025512, intron 6 of 7)	RLTR20D|LTR|ERVK	-7077.0	NM_001010834	241877.0	Mm.442146	NM_001010834	ENSMUSG00000058921	Slc10a5	Gm405|mP5	solute carrier family 10 (sodium/bile acid cotransporter family), member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-65953525-2	chr5	65953425	65953625	+	760.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	-13599.0	NM_001081104	231252.0	Mm.140015	NM_001081104	ENSMUSG00000029205	Chrna9	2410015I05Rik|Acra9|EG666827|Gm8311	cholinergic receptor, nicotinic, alpha polypeptide 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36194810-4	chr18	36194700	36194900	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167891, intron 1 of 9)	intron (NM_001167891, intron 1 of 9)	2360.0	NM_001167891	100042150.0	Mm.380390	NM_001167891	ENSMUSG00000060275	Nrg2	Don1|NTAK	neuregulin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-136669994-4	chr3	136669902	136670102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001293622)	promoter-TSS (NM_001293622)	-64.0	NM_008913	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-37139368-3	chr3	37139265	37139465	+	905.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13411.0	NM_008366	16183.0	Mm.14190	NM_008366	ENSMUSG00000027720	Il2	Il-2	interleukin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-46727268-4	chr13	46727182	46727382	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175749, intron 1 of 21)	CpG	567.0	NM_175749	218210.0	Mm.255398	NM_175749	ENSMUSG00000021374	Nup153	B130015D15Rik|C88147	nucleoporin 153	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80936590-2	chr10	80936490	80936690	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6499.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-107030209-4	chr8	107030058	107030258	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1168.0	NM_126165	116733.0	Mm.236004	NM_126165	ENSMUSG00000031913	Vps4a	4930589C15Rik|AI325971|AW553189	vacuolar protein sorting 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-102808441-4	chr4	102808342	102808542	+	845.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144906, intron 1 of 23)	MTD|LTR|ERVL-MaLR	48307.0	NM_001285859	73094.0	Mm.54201	NM_144906	ENSMUSG00000028524	Sgip1	3110007P09Rik|SGIP1alpha|gag	SH3-domain GRB2-like (endophilin) interacting protein 1	protein-coding	1.21030167306231	1.07941411307707	1.67348274205533	1.45961876779757	1.21893963300098	2.16520984387145	2.45490838683727	2.44667564944215	2.32917661225683	0.0375430342332887	0.275667885392287
Merged-chr11-8628922-4	chr11	8628824	8629024	+	926.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 1 of 30)	intron (NM_001083587, intron 1 of 30)	35611.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-65141123-3	chr6	65141034	65141234	+	927.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019455, intron 1 of 5)	intron (NM_019455, intron 1 of 5)	3596.0	NM_019455	54486.0	Mm.410688	NM_019455	ENSMUSG00000029919	Hpgds	H-PGDS|Ptgds2	hematopoietic prostaglandin D synthase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-36747201-2	chr5	36747101	36747301	+	628.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_133724)	TTS (NM_133724)	1478.0	NM_133724	117197.0	Mm.46744	NM_133724	ENSMUSG00000060708	Bloc1s4	2610101N07Rik|Blos4|Cno	biogenesis of lysosomal organelles complex-1, subunit 4, cappuccino	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26641286-2	chr17	26641186	26641386	+	569.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026170, intron 8 of 9)	intron (NM_026170, intron 8 of 9)	-35110.0	NM_025272	11974.0	Mm.22602	NM_025272	ENSMUSG00000015575	Atp6v0e	Atp6k|Atp6v0e1|M9.2	ATPase, H+ transporting, lysosomal V0 subunit E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-61479485-2	chr17	61479385	61479585	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MMERGLN-int|LTR|ERV1	1401832.0	NM_207654	13640.0	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84743313-3	chr8	84743191	84743391	+	864.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081982, intron 2 of 9)	intron (NM_001081982, intron 2 of 9)	31078.0	NM_001081981	18032.0	Mm.9394	NM_010906	ENSMUSG00000001911	Nfix	CTF|NF-I/X|NF1-X|NFI-X	nuclear factor I/X	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-60738293-4	chr10	60738230	60738430	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023596, intron 2 of 5)	B1_Mm|SINE|Alu	14452.0	NM_023596	71279.0	Mm.284462	NM_023596	ENSMUSG00000020100	Slc29a3	4933435C21Rik|AW987637|Ent3	solute carrier family 29 (nucleoside transporters), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-90508322-3	chr3	90508236	90508436	+	674.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293777, intron 1 of 5)	intron (NM_001293777, intron 1 of 5)	1162.0	NM_001293776	66511.0	Mm.154136	NM_023215	ENSMUSG00000001017	Chtop	2500003M10Rik|Fop|Srag	chromatin target of PRMT1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122230820-2	chr8	122230720	122230920	+	912.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-51321.0	NM_009569	22761.0	Mm.3105	NM_009569	ENSMUSG00000049577	Zfpm1	FOG|Fog1	zinc finger protein, multitype 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-93768402-3	chr10	93768328	93768528	+	691.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-63127.0	NM_001206851	327799.0	Mm.491598	NM_183199	ENSMUSG00000020020	Usp44	E430004F17Rik	ubiquitin specific peptidase 44	protein-coding	-0.163365317673659	-0.149452729375976	-0.154021162811712	0.00187996488779258	0.304990061727967	0.459005153502451	-0.153014446963893	0.00467524211004441	2.92866234492188	0.187539959621511	1
Merged-chr16-4381696-4	chr16	4381598	4381798	+	916.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009624, intron 2 of 10)	intron (NM_009624, intron 2 of 10)	38800.0	NM_001291910	11515.0	Mm.439750	NM_009624	ENSMUSG00000005580	Adcy9	AC9|ACtp10|AW125421|D16Wsu65e|mKIAA0520	adenylate cyclase 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-97138442-2	chr15	97138342	97138542	+	673.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	28802.0	NR_155278	102635594.0	Mm.392594	NR_155278	ENSMUSG00000116295	Gm32885	-	predicted gene, 32885	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-90294203-3	chr9	90294102	90294302	+	861.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-23433.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-31770828-4	chr2	31770761	31770961	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001283045, intron 1 of 10)	intron (NM_001283045, intron 1 of 10)	10688.0	NM_001283045	11350.0	Mm.1318	NM_009594	ENSMUSG00000026842	Abl1	AI325092|Abl|E430008G22Rik|c-Abl	c-abl oncogene 1, non-receptor tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-86337284-4	chr17	86337220	86337420	+	893.695801	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011104, intron 1 of 14)	intron (NM_011104, intron 1 of 14)	-50142.0	NR_045435	72104.0	Mm.443401	NR_045435	ENSMUSG00000100738	2010106C02Rik	-	RIKEN cDNA 2010106C02 gene	ncRNA	2.15866449957564	1.90031832007551	1.32525593219851	1.29360342595384	1.04295137615577	2.54010998744311	1.70182296814608	1.91123402600879	0.513609942512907	0.648989158646411	0.985309421980721
Merged-chr1-155475177-4	chr1	155475078	155475278	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	51933.0	NR_132128	433367.0	Mm.359304	NR_132128	ENSMUSG00000073535	Gm5532	EG433367	predicted gene 5532	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-52418962-2	chr16	52418862	52419062	+	661.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009655, intron 1 of 15)	intron (NM_009655, intron 1 of 15)	34119.0	NM_009655	11658.0	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-45659739-4	chr19	45659579	45659779	+	886.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013907, intron 1 of 8)	CpG	514.0	NM_013907	30838.0	Mm.254739	NM_013907	ENSMUSG00000040913	Fbxw4	Dac|Fbw4|SHFM3|SHSF3|dactylin|dactylyn	F-box and WD-40 domain protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-96829054-3	chr10	96828943	96829143	+	853.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-206725.0	NR_045358	75301.0	Mm.108650	NR_045358	ENSMUSG00000111924	4930556N09Rik	-	RIKEN cDNA 4930556N09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122811883-4	chr5	122811787	122811987	+	808.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042491, intron 5 of 16)	B3|SINE|B2	9455.0	NM_021505	59008.0	Mm.332667	NM_021505	ENSMUSG00000029472	Anapc5	2510006G12Rik|AA408751|AA536819|AA986414|APC5|Anpc5	anaphase-promoting complex subunit 5	protein-coding	1.79893681443387	2.57121563559734	2.24825531816601	1.26615492848619	3.14241204090921	2.59095644707354	1.78674585820661	2.06010022492071	0.996611707371936	0.293634473660839	0.797907235765382
Merged-chr5-101981289-1	chr5	101981189	101981389	+	700.0	f1_balb.idr	intron (NM_172882, intron 4 of 66)	intron (NM_172882, intron 4 of 66)	88632.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	1.70369649196811	1.76778061391691	1.97268196176854	2.36547227731097	1.93105383319701	1.15166700646616	2.10069180441411	1.10909395141045	-0.898913343434072	0.422395377147533	0.900322118218157
Merged-chr12-69733693-4	chr12	69733589	69733789	+	827.604187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361691, intron 1 of 4)	intron (NM_001361691, intron 1 of 4)	8744.0	NM_001361690	68055.0	Mm.27844	NM_026536	ENSMUSG00000054894	Atp5s	1110015E18Rik|ATPW	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit S	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-64048541-4	chr7	64048434	64048634	+	982.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	C-rich|Low_complexity|Low_complexity	-105301.0	NM_001039104	17364.0	Mm.38875	NM_018752	ENSMUSG00000030523	Trpm1	4732499L03Rik|AI606771|Ltrpc1|Mlsn1	transient receptor potential cation channel, subfamily M, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-67213157-2	chr8	67213057	67213257	+	568.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	-277601.0	NM_008673	17960.0	Mm.14125	NM_008673	ENSMUSG00000025588	Nat1	Nat-1	N-acetyl transferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-14203973-1	chr9	14203873	14204073	+	696.0	f0_balb.idr	Intergenic	Intergenic	-72328.0	NM_030261	75747.0	Mm.325126	NM_030261	ENSMUSG00000032009	Sesn3	5630400E15Rik|BC003348|SEST3	sestrin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-62466804-4	chr13	62466722	62466922	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001136496)	promoter-TSS (NM_001136496)	-10.0	NM_001136496	71508.0	Mm.442497	NM_178875	ENSMUSG00000113450	Zfp935	8430426H19Rik|Es113	zinc finger protein 935	protein-coding	0.591383049174143	0.395297812255193	2.90209198036528	0.342716759733178	0.306975838505762	0.401570322658782	2.20360353163479	0.346941305045546	-1.07044126332546	0.743114645274641	0.998431161219273
Merged-chr9-88708748-2	chr9	88708648	88708848	+	685.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359992, intron 2 of 2)	PB1D10|SINE|Alu	10839.0	NM_001359992	100039707.0	Mm.347377	NM_001128601	ENSMUSG00000079427	Mthfsl	Gm2382	5, 10-methenyltetrahydrofolate synthetase-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-162004401-4	chr1	162004359	162004559	+	892.75	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040562)	promoter-TSS (NR_040562)	-510.0	NR_040562	72753.0	Mm.452125	NR_040562	ENSMUSG00000090260	2810442N19Rik	-	RIKEN cDNA 2810442N19 gene	ncRNA	1.59404609162465	2.03530523724702	1.95654312058423	0.888185737557975	0.866301073425703	1.17799475576538	1.87382897859971	1.11125429710751	-1.19277062302079	0.356178186852576	0.85378439273359
Merged-chr9-65533081-4	chr9	65532936	65533136	+	997.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47051.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-19596203-2	chr10	19596103	19596303	+	599.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010511, intron 1 of 6)	ORR1B1|LTR|ERVL-MaLR	4254.0	NM_010511	15979.0	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-120362715-4	chr14	120362615	120362815	+	845.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360376, intron 2 of 8)	intron (NM_001360376, intron 2 of 8)	56263.0	NM_001360376	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-156859390-2	chr1	156859296	156859496	+	716.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028333, intron 4 of 4)	MTE2a|LTR|ERVL-MaLR	20373.0	NM_028333	72713.0	Mm.389206	NM_028333	ENSMUSG00000033544	Angptl1	2810039D03Rik|ANG3|ANGPT3|ANGY|ARP1	angiopoietin-like 1	protein-coding	-0.161128716517695	-0.883036795930771	-0.890611598625965	-0.893061778427922	-0.744085630581921	-0.880233907459775	-0.889911326547133	-0.892633676848341	-2.19211081861067	0.468800837409772	1
Merged-chr19-44554754-4	chr19	44554652	44554852	+	803.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026061, intron 2 of 4)	intron (NM_026061, intron 2 of 4)	690.0	NM_001347447	67264.0	Mm.2060	NM_026061	ENSMUSG00000025204	Ndufb8	2900010I05Rik|AI987932|CI-ASHI	NADH dehydrogenase (ubiquinone) 1 beta subcomplex 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32745869-2	chr2	32745769	32745969	+	602.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001252547, exon 4 of 11)	exon (NM_001252547, exon 4 of 11)	-4853.0	NM_027529	70730.0	Mm.401360	NM_027529	ENSMUSG00000009551	6330409D20Rik	AA517851	RIKEN cDNA 6330409D20 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-112141341-2	chr10	112141241	112141441	+	620.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22280.0	NM_001310675	353025.0	Mm.194428	NM_178278	ENSMUSG00000035694	Caps2	D630005B03Rik	calcyphosphine 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-57452934-4	chr19	57452831	57453031	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028115)	promoter-TSS (NM_028115)	25.0	NM_028115	72133.0	Mm.258404	NM_028115	ENSMUSG00000025086	Trub1	2610009I02Rik|9030425C13Rik|AI448235|BB118943|C76870	TruB pseudouridine (psi) synthase family member 1	protein-coding	4.60130568021056	5.21806675500215	4.31902001446959	4.90250882516032	4.71099927457204	5.59780718811901	5.23501775445173	4.59513305124877	0.348023470230306	0.341795828047512	0.842759215970827
Merged-chr4-72165865-4	chr4	72165792	72165992	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285531, intron 6 of 6)	intron (NM_001285531, intron 6 of 6)	35001.0	NM_011599	21885.0	Mm.278444	NM_011599	ENSMUSG00000008305	Tle1	C230057C06Rik|Estm14|Grg-1|Grg1|Tle4l	transducin-like enhancer of split 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-58890243-2	chr15	58890143	58890343	+	844.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_175151)	TTS (NM_175151)	1014.0	NM_175226	75841.0	Mm.4537	NM_175226	ENSMUSG00000037075	Rnf139	4930555P18Rik	ring finger protein 139	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69100037-4	chr11	69099932	69100132	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159367)	promoter-TSS (NM_001159367)	-120.0	NM_001159367	18626.0	Mm.7373	NM_011065	ENSMUSG00000020893	Per1	Hftm|Per|m-rigui|mPer1	period circadian clock 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-95795698-3	chr10	95795608	95795808	+	935.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-144955.0	NM_001001932	216238.0	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-57580108-3	chr9	57580013	57580213	+	852.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022813, intron 4 of 8)	intron (NM_022813, intron 4 of 8)	-9339.0	NM_027895	71742.0	Mm.155877	NM_027895	ENSMUSG00000032308	Ulk3	1200015E14Rik	unc-51-like kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122550639-4	chr5	122550549	122550749	+	842.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001358917, exon 19 of 19)	3' UTR (NM_001358917, exon 19 of 19)	-48424.0	NR_027838	11938.0	Mm.227583	NM_009722	ENSMUSG00000029467	Atp2a2	9530097L16Rik|D5Wsu150e|SERCA2|SERCA2B|Serca2a|mKIAA4195	ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	protein-coding	2.03163565948157	1.30918563870961	2.32952090844107	2.2614405496249	2.1599659346394	1.31641419101313	2.5572071123149	2.98371360855167	0.808769077294771	0.418176206485625	0.898080810038401
Merged-chr19-3907506-1	chr19	3907406	3907606	+	1000.0	f0_balb.idr	promoter-TSS (NM_001167784)	promoter-TSS (NM_001167784)	-373.0	NM_001136091	27060.0	Mm.271689	NM_016921	ENSMUSG00000001750	Tcirg1	ATP6N1C|ATP6a3|Atp6i|OC-116|OPTB1|Stv1|TIRC7|Vph1|oc	T cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 protein A3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-148831880-2	chr5	148831780	148831980	+	622.849976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53917.0	NR_131106	78015.0	Mm.243839	NR_131106	ENSMUSG00000085740	4930505K14Rik	-	RIKEN cDNA 4930505K14 gene	ncRNA	-0.552022471132673	-0.537767799055013	-0.542409429227245	-0.210069605379263	-0.551125005868952	0.361712905932759	-0.541383343894221	-0.54537924417294	1.85605969038588	0.496528761342534	1
Merged-chr15-74934284-4	chr15	74934167	74934367	+	895.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20784.0	NM_001164039	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-32408042-4	chr18	32407952	32408152	+	896.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360876, intron 2 of 17)	intron (NM_001360876, intron 2 of 17)	-29768.0	NR_045403	402767.0	Mm.385109	NR_045403	ENSMUSG00000097413	A830052D11Rik	-	RIKEN cDNA A830052D11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-12433267-4	chr19	12433172	12433372	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5367.0	NM_019540	56093.0	Mm.285849	NM_019540	ENSMUSG00000040065	Pfpl	Epcs5|Epcs50	pore forming protein-like	protein-coding	3.52066533985394	3.28920433034472	3.88193255592055	3.70795706007107	4.30310711964797	3.63586529549811	4.21150768431659	3.86081108299027	0.596628374322588	0.212601907332562	0.702047781144169
Merged-chr3-127918218-3	chr3	127918122	127918322	+	709.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040552, intron 1 of 4)	ORR1D2|LTR|ERVL-MaLR	2051.0	NR_040552	329753.0	Mm.119720	NR_040552	ENSMUSG00000104763	9830132P13Rik	9830132P13	RIKEN cDNA 9830132P13 gene	ncRNA	3.09231571522083	3.47791618783853	4.48150131039365	3.50884955340022	2.82187246942889	2.91578000430141	3.70934612190614	3.28139851554516	-0.795456578560902	0.180285853274561	0.652400938596829
Merged-chr4-63824298-2	chr4	63824198	63824398	+	717.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36986.0	NM_009403	21949.0	Mm.4664	NM_009403	ENSMUSG00000028362	Tnfsf8	CD153|CD30LG|Cd30l|Tnlg3a	tumor necrosis factor (ligand) superfamily, member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127064337-3	chr10	127064250	127064450	+	891.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009870, exon 2 of 8)	exon (NM_009870, exon 2 of 8)	815.0	NM_001355005	12567.0	Mm.6839	NM_009870	ENSMUSG00000006728	Cdk4	Crk3	cyclin-dependent kinase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-160864272-3	chr2	160864180	160864380	+	613.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177263, intron 1 of 3)	intron (NM_177263, intron 1 of 3)	8710.0	NM_177263	320799.0	Mm.436734	NM_177263	ENSMUSG00000035877	Zhx3	1810059C13Rik|4932418O04Rik|9530010N21Rik|Tix1|mKIAA0395	zinc fingers and homeoboxes 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-29965451-4	chr2	29965350	29965550	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001309460)	promoter-TSS (NM_001309460)	-110.0	NM_001177668	20740.0	Mm.204969	NM_001076554	ENSMUSG00000057738	Sptan1	2610027H02Rik|Spna-2|Spna2	spectrin alpha, non-erythrocytic 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-15067925-2	chr14	15067825	15068025	+	880.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	247110.0	NM_001195229	674895.0	Mm.317563	NM_001034865	ENSMUSG00000042567	Nek10	Gm282	NIMA (never in mitosis gene a)- related kinase 10	protein-coding	0.196514907729107	0.217900912035613	0.905990290425712	0.377987002163869	0.598620809858838	0.219468389678923	0.918927977288924	0.206472037892199	0.352178549557123	0.857142074225692	1
Merged-chr4-126227644-4	chr4	126227565	126227765	+	738.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24955.0	NM_146153	230753.0	Mm.29813	NM_146153	ENSMUSG00000043962	Thrap3	9330151F09Rik|B230333E16Rik|Trap150	thyroid hormone receptor associated protein 3	protein-coding	0.101838181885207	0.607161432623866	0.289081897722433	0.109233057841142	0.824483289777842	0.120758281057266	0.293904615464883	0.275109200018026	0.823123351192443	0.671851817245134	1
Merged-chr16-58016999-1	chr16	58016899	58017099	+	541.0	f0_balb.idr	Intergenic	Intergenic	-262262.0	NM_007739	12837.0	Mm.130388	NM_007739	ENSMUSG00000068196	Col8a1	Col8a-1	collagen, type VIII, alpha 1	protein-coding	1.36612818038969	0.666238254014948	0.654207454063586	0.836909134209556	1.6775285517989	1.371086439532	0.865772609603309	0.840867577426516	1.34384468504962	0.362295805643993	0.8580597646541
Merged-chr2-60882745-1	chr2	60882645	60882845	+	540.0	f1_c57bl6.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	-1307.0	NM_001141931	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-53249748-4	chr18	53249600	53249800	+	988.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029394, intron 1 of 6)	intron (NM_029394, intron 1 of 6)	4038.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-139387941-2	chr7	139387841	139388041	+	881.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1168.0	NM_183144	212111.0	Mm.28308	NM_183144	ENSMUSG00000025477	Inpp5a	-	inositol polyphosphate-5-phosphatase A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-37046392-3	chr6	37046296	37046496	+	730.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347104, intron 12 of 32)	intron (NM_001347104, intron 12 of 32)	-236217.0	NM_008973	19242.0	Mm.279690	NM_008973	ENSMUSG00000029838	Ptn	HARP|HB-GAM|HBBM|HBBN|HBGF-8|HBNF|OSF|Osf-1|Osf1	pleiotrophin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131911070-4	chr1	131910971	131911171	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145804, intron 1 of 6)	CpG	613.0	NM_175294	98415.0	Mm.246869	NM_175294	ENSMUSG00000026434	Nucks1	2700010L10Rik|8430423A01Rik|AI647518|C78391|Nucks	nuclear casein kinase and cyclin-dependent kinase substrate 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-5291014-3	chr6	5290922	5291122	+	654.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183308, intron 1 of 8)	intron (NM_183308, intron 1 of 8)	7351.0	NM_183308	330260.0	Mm.126984	NM_183308	ENSMUSG00000032667	Pon2	6330405I24Rik|AI481612	paraoxonase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-58952144-3	chr4	58952040	58952240	+	749.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355408, intron 5 of 6)	intron (NM_001355408, intron 5 of 6)	8512.0	NM_001355408	100041581.0	Mm.463942	NM_001099323	ENSMUSG00000038630	Zkscan16	XM_143800|Zfp483	zinc finger with KRAB and SCAN domains 16	protein-coding	0.0341043043078888	0.0529374372965467	0.0467900680488012	0.0420324975189302	0.535855885354445	0.0543202998441793	0.847736581163729	0.490091789196824	4.12989217349181	0.0519366576101814	1
Merged-chr2-62654729-4	chr2	62654626	62654826	+	877.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8471.0	NM_001164477	71586.0	Mm.136224	NM_027835	ENSMUSG00000026896	Ifih1	9130009C22Rik|Helicard|Hlcd|MDA5|RLR-2	interferon induced with helicase C domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-97080364-3	chr7	97080200	97080400	+	830.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1451.0	NM_001162477	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-43477634-4	chr15	43477532	43477732	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_046064)	promoter-TSS (NR_046064)	403.0	NM_025736	66736.0	Mm.244512	NM_025736	ENSMUSG00000022337	Emc2	4921531G14Rik|AV060620|AW209495|Ttc35	ER membrane protein complex subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-13498259-2	chr10	13498159	13498359	+	767.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-2769.0	NM_001330198	66848.0	Mm.26625	NM_025799	ENSMUSG00000019810	Fuca2	0610025O11Rik|5530401P20Rik	fucosidase, alpha-L- 2, plasma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-66441825-2	chr16	66441725	66441925	+	702.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2B|LINE|L1	-215293.0	NR_040512	75501.0	Mm.394300	NR_040512	ENSMUSG00000092599	1700010K23Rik	-	RIKEN cDNA 1700010K23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-105047496-4	chr13	105047377	105047577	+	917.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029879, intron 2 of 5)	intron (NM_029879, intron 2 of 5)	7453.0	NM_029879	52882.0	Mm.100348	NM_029879	ENSMUSG00000021719	Rgs7bp	A930030I01Rik|AI842293|D13Bwg1146e|R7bp	regulator of G-protein signalling 7 binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-95303084-2	chr10	95302984	95303184	+	653.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001330138, intron 2 of 2)	PB1D7|SINE|Alu	20625.0	NM_001330138	12905.0	Mm.473739	NM_009950	ENSMUSG00000045867	Cradd	RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-22028875-4	chr13	22028774	22028974	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6769.0	NM_175659	319168.0	Mm.250564	NM_175659	ENSMUSG00000069302	Hist1h2ah	-	histone cluster 1, H2ah	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84065229-2	chr8	84065129	84065329	+	839.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1607.0	NM_009055	19724.0	Mm.7892	NM_009055	ENSMUSG00000031706	Rfx1	AI047719|AI385641	regulatory factor X, 1 (influences HLA class II expression)	protein-coding	0.725648939366903	0.951212369029677	0.60807229662732	1.20107926348421	0.730039433165078	0.958946619693124	0.777833211881055	1.20842507322601	0.212968386545589	0.885474339393813	1
Merged-chr8-84186762-4	chr8	84186692	84186892	+	935.1749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7831.0	NR_029821	723819.0		NR_029821	ENSMUSG00000065483	Mir181c	Mirn181c|mir-181c	microRNA 181c	ncRNA	4.01097717892479	3.13319937723304	4.3228637240785	2.92455884968724	4.0421827729433	4.09331927677383	4.4897918841411	2.94133247344436	0.376574044651819	0.503901501244724	0.939958055338028
Merged-chr10-80053510-4	chr10	80053402	80053602	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008162)	promoter-TSS (NM_008162)	14.0	NM_008162	625249.0	Mm.332810	NM_008162	ENSMUSG00000075706	Gpx4	GPx-4|GSHPx-4|PHGPx|mtPHGPx|snGPx	glutathione peroxidase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-43110724-4	chr1	43110616	43110816	+	935.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133818, intron 2 of 3)	ORR1D2|LTR|ERVL-MaLR	12006.0	NM_133818	98404.0	Mm.28817	NM_133818	ENSMUSG00000010290	AI597479	-	expressed sequence AI597479	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-55280464-3	chr15	55280351	55280551	+	669.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27299.0	NM_181277	12818.0	Mm.297859	NM_181277	ENSMUSG00000022371	Col14a1	5730412L22Rik|AW108078	collagen, type XIV, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-37466599-3	chr1	37466519	37466719	+	799.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173870, intron 5 of 15)	intron (NM_173870, intron 5 of 15)	21986.0	NR_024017	77633.0	Mm.483177	NR_024017	ENSMUSG00000103948	4930594C11Rik	-	G1 to S phase transition pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-18005612-2	chr5	18005512	18005712	+	742.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081143, intron 5 of 7)	RMER17A2|LTR|ERVK	43042.0	NM_001081143	242851.0	Mm.332230	NM_001081143	ENSMUSG00000028777	Gnat3	Ggust|Gtn	guanine nucleotide binding protein, alpha transducing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-72038392-3	chr2	72038299	72038499	+	645.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001204167, intron 3 of 5)	intron (NM_001204167, intron 3 of 5)	-16218.0	NM_001355478	56508.0	Mm.196153	NM_019688	ENSMUSG00000049044	Rapgef4	1300003D15Rik|5730402K07Rik|6330581N18Rik|EPAC 2|Epac-2|Epac2|mKIAA4040	Rap guanine nucleotide exchange factor (GEF) 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-83576107-4	chr9	83576010	83576210	+	898.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172507, intron 1 of 3)	intron (NM_172507, intron 1 of 3)	27772.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	4.3611477413361	4.09736586507905	3.23574781721539	4.10271895741867	4.6389130863636	4.64403495835059	3.99346396008397	3.64720119945083	0.376847449696027	0.423707186520423	0.900822000686126
Merged-chr12-12247264-4	chr12	12247201	12247401	+	735.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-14838.0	NM_029758	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	3.81624758401538	3.22720788857683	3.74888414558544	2.76607660002815	4.19941401016616	4.10198385574931	3.54240163545841	3.43359395456011	0.593078358207225	0.271668308470089	0.775081570630341
Merged-chr11-103418735-4	chr11	103418630	103418830	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6066.0	NM_183034	353047.0	Mm.18556	NM_183034	ENSMUSG00000034247	Plekhm1	AP162|B2|BC038943|D330036J23Rik	pleckstrin homology domain containing, family M (with RUN domain) member 1	protein-coding	4.830986262819	5.12762998980189	4.80709776190443	5.12615332505178	5.28588674258034	4.57933177585276	4.48996256806189	5.93454292652206	0.275544909252968	0.459540339504281	0.920256758657899
Merged-chr6-38641426-4	chr6	38641355	38641555	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4216.0	NM_001033171	74253.0	Mm.121859	NM_001033171	ENSMUSG00000071537	Klrg2	2310020F24Rik	killer cell lectin-like receptor subfamily G, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-107447409-2	chr1	107447309	107447509	+	927.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027548, intron 5 of 7)	intron (NM_027548, intron 5 of 7)	24720.0	NM_027548	116872.0	Mm.66015	NM_027548	ENSMUSG00000067001	Serpinb7	4631416M05Rik|megsin|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-20424982-4	chr16	20424900	20425100	+	919.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176839, intron 1 of 6)	intron (NM_176839, intron 1 of 6)	1394.0	NM_013790	27416.0	Mm.20845	NM_013790	ENSMUSG00000022822	Abcc5	2900011L11Rik|AI132311|Abcc5a|Abcc5b|Mrp5	ATP-binding cassette, sub-family C (CFTR/MRP), member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-76218556-4	chr16	76218448	76218648	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	95935.0	NR_040575	78215.0	Mm.243885	NR_040575		4930578N18Rik	-	RIKEN cDNA 4930578N18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-25389298-4	chr12	25389221	25389421	+	938.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	260147.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-136929228-3	chr5	136929128	136929328	+	912.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015555, intron 3 of 3)	intron (NR_015555, intron 3 of 3)	10082.0	NR_015555	66752.0	Mm.135764	NR_015555	ENSMUSG00000097908	4933404O12Rik	AW494809	RIKEN cDNA 4933404O12 gene	ncRNA	4.55814899788034	4.65470795670065	4.78701702799922	3.40195492667505	3.63841668061001	3.05214280491122	3.62731887860255	3.51184319456088	-1.32382777449289	0.00727923040245168	0.0868967414443667
Merged-chr8-45409227-2	chr8	45409127	45409327	+	694.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357317, intron 1 of 5)	intron (NM_001357317, intron 1 of 5)	1153.0	NM_001357316	142980.0	Mm.33874	NM_126166	ENSMUSG00000031639	Tlr3	AI957183	toll-like receptor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-76002001-2	chr14	76001901	76002101	+	608.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026816, intron 2 of 7)	ORR1B1|LTR|ERVL-MaLR	8864.0	NM_026816	68705.0	Mm.20415	NM_026816	ENSMUSG00000067995	Gtf2f2	1110031C13Rik|AI326315	general transcription factor IIF, polypeptide 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-137593907-7	chr4	137593806	137594006	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347227)	promoter-TSS (NM_001347227)	-266.0	NM_001347227	170707.0	Mm.218478	NM_130879	ENSMUSG00000043411	Usp48	2810449C13Rik|AI115503|BC021769|D330022K21Rik|Usp31	ubiquitin specific peptidase 48	protein-coding	4.68229359467897	3.04085229007612	3.69342184352698	4.52669696532847	3.94600141845186	3.34082889370828	4.46030059750747	3.76083932157931	-0.287400958982697	0.584675510251849	0.967268722441911
Merged-chr14-60805798-2	chr14	60805698	60805898	+	732.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_027436, intron 7 of 18)	L2|LINE|L2	21232.0	NR_040642	70478.0	Mm.274650	NM_027436	ENSMUSG00000021993	Mipep	5730405E07Rik|MIP	mitochondrial intermediate peptidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-95685921-3	chr13	95685830	95686030	+	975.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027711, intron 14 of 35)	intron (NM_027711, intron 14 of 35)	-10990.0	NM_010170	14064.0	Mm.440952	NM_010170	ENSMUSG00000021675	F2rl2	F730031A08|PAR3	coagulation factor II (thrombin) receptor-like 2	protein-coding	2.63798270427393	2.2801713207873	2.86895058717996	1.45592408413792	3.06429810523988	2.47243852614131	3.73552229188922	3.06878558709415	1.3822299485854	0.0755272085060523	0.416495553867369
Merged-chr2-59184281-4	chr2	59184185	59184385	+	991.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 1 of 20)	intron (NM_175464, intron 1 of 20)	23435.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95736423-2	chr3	95736323	95736523	+	765.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007899, intron 7 of 10)	(CA)n|Simple_repeat|Simple_repeat	-1450.0	NR_105981	102466787.0		NR_105981	ENSMUSG00000098737	Mir7014	Gm27837|mmu-mir-7014	microRNA 7014	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-72136391-3	chr8	72136296	72136496	+	858.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001491, intron 1 of 7)	intron (NM_001001491, intron 1 of 7)	1104.0	NM_001001491	326618.0	Mm.295124	NM_001001491	ENSMUSG00000031799	Tpm4	2610528G24Rik|Tpm4.2|Tpm4.2cy	tropomyosin 4	protein-coding	2.46557971867453	1.48150006772369	1.71160311679631	3.30719132013939	2.76183003237516	2.3961940035708	2.81113359241862	3.38081222725428	0.78872444408771	0.36050943954491	0.856513317952442
Merged-chr11-114727342-4	chr11	114727233	114727433	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001034878)	promoter-TSS (NM_001034878)	-79.0	NM_001034878	432611.0	Mm.212764	NM_001034878	ENSMUSG00000034706	Dnaic2	C030015H18Rik|Dnai2|Gm728|b2b3405Clo	dynein, axonemal, intermediate chain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5658514-2	chr17	5658414	5658614	+	738.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 2 of 8)	intron (NM_146073, intron 2 of 8)	-140143.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28963828-2	chr7	28963728	28963928	+	785.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1496.0	NM_001360548	60595.0	Mm.81144	NM_021895	ENSMUSG00000054808	Actn4	C77391	actinin alpha 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-53301870-2	chr11	53301770	53301970	+	801.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1391.0	NM_008300	15525.0	Mm.239865	NM_008300	ENSMUSG00000020361	Hspa4	70kDa|AI317151|APG-2|Hsp110|Hsp70RY|mKIAA4025	heat shock protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-75765233-2	chr16	75765133	75765333	+	901.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_030201, exon 2 of 5)	exon (NM_030201, exon 2 of 5)	1585.0	NR_027492	110920.0	Mm.26704	NM_030201	ENSMUSG00000032932	Hspa13	1600002I10Rik|AV006182|B230217N24Rik|Stch	heat shock protein 70 family, member 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-155979481-4	chr2	155979382	155979582	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001130000, intron 19 of 32)	intron (NM_001130000, intron 19 of 32)	22924.0	NM_177217	16328.0	Mm.288729	NM_008383	ENSMUSG00000038241	Cep250	AW490617|B230210E21Rik|Cep2|Inmp	centrosomal protein 250	protein-coding	3.21662104342627	2.8543814288486	2.23033367254554	3.53608833699323	3.62887748355764	3.36167764797601	3.34379951712353	4.1835769128879	0.987209549321072	0.103473067340352	0.500914100336688
Merged-chr3-79445053-2	chr3	79444953	79445153	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001142953, intron 3 of 4)	intron (NM_001142953, intron 3 of 4)	99677.0	NM_001142953	100233207.0	Mm.373801	NM_001142953	ENSMUSG00000091685	Gm17359	-	predicted gene, 17359	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-39639378-2	chr18	39639278	39639478	+	606.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-134119.0	NM_011033	18459.0	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-3475920-3	chr2	3475766	3475966	+	924.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022724)	promoter-TSS (NM_022724)	-880.0	NR_027509	64707.0	Mm.23483	NM_022724	ENSMUSG00000026646	Suv39h2	4930507K23Rik|AA536750|D030054H19Rik|D2Ertd544e|KMT1B	suppressor of variegation 3-9 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-83858081-3	chr8	83857948	83858148	+	683.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2-int|LTR|ERVL-MaLR	-42050.0	NM_181039	330814.0	Mm.260733	NM_181039	ENSMUSG00000013033	Adgrl1	2900070I05Rik|AI182398|CLIBA|Lec2|Lphn1|mKIAA0821	adhesion G protein-coupled receptor L1	protein-coding	1.57180864577486	1.69088319280069	1.21320129118587	0.793858493569974	1.12524978896129	2.01382342098392	1.0371535122063	0.796119326710513	-0.0611353982095802	0.963883031327719	0.998431161219273
Merged-chr12-4195413-4	chr12	4195354	4195554	+	903.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159537, intron 6 of 21)	intron (NM_001159537, intron 6 of 21)	38511.0	NM_134046	52504.0	Mm.70546	NM_134046	ENSMUSG00000020652	Cenpo	2810429O05Rik|8430427C03Rik|D12Ertd482e	centromere protein O	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-13554947-4	chr9	13554792	13554992	+	980.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65097.0	NM_001013813	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-3646016-4	chr8	3645919	3646119	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-9751.0	NM_001204959	57264.0	Mm.1181	NM_022984	ENSMUSG00000012705	Retn	ADSF|Fizz3|Rstn|Xcp4	resistin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-123504521-3	chr9	123504434	123504634	+	836.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013860, intron 2 of 7)	intron (NM_013860, intron 2 of 7)	-25219.0	NM_001357485	83493.0	Mm.273671	NM_030692	ENSMUSG00000025240	Sacm1l	SAC1|Sac1p|mKIAA0851	SAC1 suppressor of actin mutations 1-like (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97315458-2	chr6	97315353	97315553	+	643.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 12 of 23)	intron (NM_145148, intron 12 of 23)	-62673.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	-1.26687315729308	-1.51144556179868	-1.52074032698608	-1.52837532385482	-1.39377469321613	-1.50943134740853	-1.5186361958831	-1.52700866306571	-0.563662181339258	0.873093626595385	1
Merged-chr9-118608718-5	chr9	118608506	118608706	+	989.2666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 1 of 27)	intron (NM_133721, intron 1 of 27)	1897.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-22799802-4	chr2	22799697	22799897	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019456, intron 1 of 13)	intron (NM_019456, intron 1 of 13)	25470.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-10599214-3	chr17	10599118	10599318	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027032, intron 2 of 4)	intron (NM_027032, intron 2 of 4)	143002.0	NR_077238	319750.0	Mm.383485	NR_077237	ENSMUSG00000089633	A230009B12Rik	-	RIKEN cDNA A230009B12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-78429846-3	chr9	78429732	78429932	+	641.861084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_173386)	TTS (NM_173386)	13405.0	NR_125721	214763.0	Mm.101559	NM_173386	ENSMUSG00000032344	Mb21d1	E330016A19Rik|cGAS	Mab-21 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-29039801-4	chr7	29039702	29039902	+	985.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009109, intron 87 of 105)	MER91B|DNA|hAT-Tip100	43892.0	NR_035489	100316710.0		NR_035489	ENSMUSG00000089219	Mir1963	mir-1963|mmu-mir-1963	microRNA 1963	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-40545748-2	chr12	40545648	40545848	+	903.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	99695.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-60854384-4	chr15	60854286	60854486	+	938.05835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29306.0	NM_001162926	399603.0	Mm.411968	NM_207269	ENSMUSG00000072568	Fam84b	BF642811|D330050I23Rik	family with sequence similarity 84, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-76176649-3	chr5	76176555	76176755	+	804.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR19-int|LTR|ERVK	-7225.0	NM_011626	21982.0	Mm.790	NM_011626	ENSMUSG00000029234	Tmem165	AV026557|Tpardl|Tparl|pFT27	transmembrane protein 165	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-30715162-2	chr14	30715059	30715259	+	987.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_001166532)	promoter-TSS (NM_001166532)	-8.0	NM_001166531	54650.0	Mm.294662	NM_019460	ENSMUSG00000006527	Sfmbt1	4930442N21Rik|9330180L21Rik|AA536974|Sfmbt|Smr	Scm-like with four mbt domains 1	protein-coding	1.75005247562656	1.74736798170191	0.995433696267601	1.18809965795845	1.93456633792021	1.88692721258298	0.999469812196236	1.75888165456766	0.741830125606633	0.546883324265799	0.957629043069512
Merged-chr19-11964402-2	chr19	11964302	11964502	+	571.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-1442.0	NM_001033174	76303.0	Mm.291279	NM_001033174	ENSMUSG00000024687	Osbp	1110018F06Rik|AW559088|mKIAA4220	oxysterol binding protein	protein-coding	1.2257691598676	3.02917132091776	2.75509460634977	1.76510290187108	2.00803861632932	3.05197362077429	2.77755749305834	1.77460338108795	0.226477605171654	0.812316915420172	0.998431161219273
Merged-chr3-79161310-4	chr3	79161203	79161403	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15428.0	NM_001099624	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	4.03625378645142	2.71577742584056	3.62654985524131	3.96245668442881	4.51898044395843	4.47169825602058	4.03943115416775	4.68309211916125	1.02531895293138	0.0287286274455782	0.230089049602083
Merged-chr19-47224954-4	chr19	47224876	47225076	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021360, intron 1 of 5)	ORR1E|LTR|ERVL-MaLR	-3867.0	NM_001163480	18011.0	Mm.313651	NM_021360	ENSMUSG00000006435	Neurl1a	2410129E16Rik|AI450910|AI481072|Neu1|Neur1|Neurl|Neurl1|Nlz|Rnf67	neuralized E3 ubiquitin protein ligase 1A	protein-coding	6.24581230232206	5.68402231651065	6.06464079945314	5.88849920773273	5.999989297681	6.12220620348234	5.61394026443676	6.02844494227493	-0.0429524696108249	0.85853640033481	0.998431161219273
Merged-chr5-139470034-2	chr5	139469909	139470109	+	574.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9475.0	NM_028469	73212.0	Mm.84294	NM_028469	ENSMUSG00000053553	3110082I17Rik	AW411904	RIKEN cDNA 3110082I17 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88410059-4	chr3	88409970	88410170	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_178696)	TTS (NM_178696)	327.0	NM_001310605	67037.0	Mm.36715	NM_025928	ENSMUSG00000028066	Pmf1	2600009M07Rik|AL033286|AW060657	polyamine-modulated factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139505298-4	chr5	139505224	139505424	+	846.0750119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18427.0	NR_040701	74973.0	Mm.141282	NR_040701	ENSMUSG00000106056	4930500L23Rik	-	RIKEN cDNA 4930500L23 gene	ncRNA	2.13948944176772	0.848629972001926	1.55868395992016	1.62658860218588	0.995437572145984	0.852732766924077	1.9108225321901	0.818003689881846	-1.22390460882397	0.376492902449578	0.869600522734195
Merged-chr4-150010387-2	chr4	150010288	150010488	+	662.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1365.0	NM_173371	100198.0	Mm.22183	NM_173371	ENSMUSG00000028980	H6pd	AI785303|G6pd1|Gpd-1|Gpd1	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	protein-coding	1.24489547218089	0.739677700867039	0.727432722239437	1.20311123237745	1.14542508461339	1.66214995673958	0.730146801028313	1.53570294352495	1.31923096558871	0.368837596328011	0.863082852829959
Merged-chr1-85342384-1	chr1	85342284	85342484	+	540.0	f1_balb.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-71818.0	NM_001037909	620078.0	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik	RIKEN cDNA C130026I21 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-66846120-4	chr15	66846013	66846213	+	952.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009375, intron 45 of 47)	intron (NM_009375, intron 45 of 47)	-14284.0	NM_009192	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80703911-2	chr10	80703811	80704011	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_027829, exon 5 of 10)	exon (NM_027829, exon 5 of 10)	1218.0	NM_027829	71564.0	Mm.35802	NM_027829	ENSMUSG00000055862	Izumo4	9030607L17Rik|AI550407	IZUMO family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-98880638-2	chr15	98880538	98880738	+	729.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026967, intron 1 of 7)	intron (NM_026967, intron 1 of 7)	776.0	NM_026967	69159.0	Mm.259708	NM_026967	ENSMUSG00000023755	Rhebl1	1810036J22Rik|Rheb2	Ras homolog enriched in brain like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4305785-4	chr19	4305622	4305822	+	775.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130863, intron 1 of 21)	CpG	500.0	NM_130863	110355.0	Mm.254144	NM_130863	ENSMUSG00000024858	Grk2	Adrbk-1|Adrbk1|Bark-1|beta ARK|betaARK1	G protein-coupled receptor kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-34837703-2	chr1	34837603	34837803	+	547.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001160236, intron 1 of 6)	(TA)n|Simple_repeat|Simple_repeat	5347.0	NM_174997	214469.0	Mm.120151	NM_174997	ENSMUSG00000037503	Fam168b	Mani|mKIAA4042	family with sequence similarity 168, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45700145-2	chr7	45700039	45700239	+	915.75	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_009800, exon 1 of 9)	5' UTR (NM_009800, exon 1 of 9)	172.0	NM_009800	12348.0	Mm.27736	NM_009800	ENSMUSG00000003273	Car11	Ca11	carbonic anhydrase 11	protein-coding	1.20874466158255	0.487156490467379	1.35848954833485	0.466942408855786	0.633027274469254	0.489685570407739	1.46842458767791	0.468502422409158	-0.413121866673424	0.811713444755074	0.998431161219273
Merged-chr4-120749962-2	chr4	120749862	120750062	+	744.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2786.0	NM_001081142	60613.0	Mm.249977	NM_001081142	ENSMUSG00000028631	Kcnq4	-	potassium voltage-gated channel, subfamily Q, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-85867854-3	chr15	85867747	85867947	+	884.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013882, intron 5 of 10)	intron (NM_013882, intron 5 of 10)	7901.0	NM_013882	29870.0	Mm.20858	NM_013882	ENSMUSG00000022385	Gtse1	B99|Gtse-1	G two S phase expressed protein 1	protein-coding	2.62519627579472	2.68891716437214	1.28957551678189	2.05522947111585	2.49141934168415	3.12634701495973	1.56832678605869	1.73361675663872	0.239005737899253	0.806535434276368	0.998431161219273
Merged-chr2-131208486-2	chr2	131208386	131208586	+	869.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1874.0	NM_001291032	69596.0	Mm.2937	NM_027129	ENSMUSG00000068264	Ap5s1	0610038L13Rik|2310035K24Rik|AW060727|sigma5	adaptor-related protein 5 complex, sigma 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-149171696-4	chr4	149171576	149171776	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4971.0	NM_001081274	110208.0	Mm.252080	NM_025801	ENSMUSG00000028961	Pgd	0610042A05Rik|AU019875|C78335	phosphogluconate dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85959606-4	chr12	85959491	85959691	+	975.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347395, intron 29 of 32)	intron (NM_001347395, intron 29 of 32)	119450.0	NM_009368	21809.0	Mm.3992	NM_009368	ENSMUSG00000021253	Tgfb3	TGF-beta-3|Tgfb-3	transforming growth factor, beta 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19360546-4	chr7	19360449	19360649	+	941.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001010836)	promoter-TSS (NM_001010836)	-667.0	NM_001010836	333654.0	Mm.333640	NM_001010836	ENSMUSG00000040734	Ppp1r13l	AV260376|IASPP|Nkip1|wa3	protein phosphatase 1, regulatory (inhibitor) subunit 13 like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-30596012-7	chr14	30595941	30596141	+	882.5238039999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011103, intron 17 of 17)	intron (NM_011103, intron 17 of 17)	14269.0	NM_001310682	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-20877106-2	chr9	20877006	20877206	+	821.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_145154, intron 2 of 5)	intron (NM_145154, intron 2 of 5)	2604.0	NM_145154	70726.0	Mm.34019	NM_145154	ENSMUSG00000038742	Angptl6	6330404E11Rik|AGF|ARP3|Arp5	angiopoietin-like 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-119663198-4	chr4	119663100	119663300	+	909.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-4255.0	NM_008191	14916.0	Mm.278	NM_008191	ENSMUSG00000032978	Guca2b	AV066530|Gcap2|Ugn	guanylate cyclase activator 2b (retina)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-88720372-5	chr9	88720205	88720405	+	903.0399779999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001128601)	promoter-TSS (NM_001128601)	-507.0	NM_001128601	100039707.0	Mm.347377	NM_001128601	ENSMUSG00000079427	Mthfsl	Gm2382	5, 10-methenyltetrahydrofolate synthetase-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-125531844-4	chr8	125531739	125531939	+	928.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357372, intron 1 of 21)	ORR1E|LTR|ERVL-MaLR	38024.0	NM_001357372	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	2.98045354530576	2.45018349084079	3.47279093773303	3.44718063201087	3.16338311193321	3.81869128030812	2.18660728171686	3.15841301972342	0.0829158974026617	0.901771549282486	0.998431161219273
Merged-chr17-27707356-1	chr17	27707256	27707456	+	555.0	f1_c57bl6.idr	intron (NM_001286743, intron 8 of 9)	intron (NM_001286743, intron 8 of 9)	21595.0	NM_013891	30051.0	Mm.26768	NM_013891	ENSMUSG00000024215	Spdef	PDEF|Pse	SAM pointed domain containing ets transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-102944518-3	chr4	102944408	102944608	+	969.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285859, intron 17 of 23)	intron (NM_001285859, intron 17 of 23)	-41871.0	NM_001163767	67344.0	Mm.111346	NM_026100	ENSMUSG00000028523	Tctex1d1	1700055O19Rik	Tctex1 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-30677636-2	chr10	30677536	30677736	+	785.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358842, intron 9 of 14)	intron (NM_001358842, intron 9 of 14)	-21769.0	NM_001111267	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-27466534-4	chr15	27466413	27466613	+	996.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020332)	promoter-TSS (NM_020332)	-164.0	NM_020332	11732.0	Mm.265264	NM_020332	ENSMUSG00000022265	Ank	Ankh|D15Ertd221e|ank|mKIAA1581	progressive ankylosis	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-110922184-1	chr10	110922084	110922284	+	560.0	f1_balb.idr	intron (NM_007792, intron 1 of 5)	intron (NM_007792, intron 1 of 5)	2008.0	NM_007792	13008.0	Mm.2020	NM_007792	ENSMUSG00000020186	Csrp2	AW551867|Crp2|SmLim	cysteine and glycine-rich protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-90238579-2	chr9	90238479	90238679	+	639.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 3 of 12)	intron (NM_194334, intron 3 of 12)	32190.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-136126510-1	chr4	136126410	136126610	+	581.0	f1_balb.idr	Intergenic	B4A|SINE|B4	-17312.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	1.41072130486172	0.426354595432847	0.414533120189262	0.405246515659888	0.391858277779235	1.29910194209846	1.34104603843216	0.406879718755263	0.772006186029617	0.678306135419646	0.994999283375466
Merged-chr2-155775078-2	chr2	155774978	155775178	+	564.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010808)	promoter-TSS (NM_010808)	-264.0	NM_010808	17391.0	Mm.389325	NM_010808	ENSMUSG00000027612	Mmp24	AU040325|MMP-21|MT5-MMP|MT5MMP|MTMMP5	matrix metallopeptidase 24	protein-coding	0.645199983981203	0.158013001063695	0.150841539881964	0.145275403050608	0.656048776098004	0.15962310950133	0.152427346552426	1.08295302855199	1.73871895448353	0.407198410657761	1
Merged-chr13-113490694-4	chr13	113490598	113490798	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045501, intron 1 of 6)	intron (NR_045501, intron 1 of 6)	12146.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-135423342-4	chr3	135423237	135423437	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025902)	promoter-TSS (NM_025902)	96.0	NM_025902	67006.0	Mm.269993	NM_025902	ENSMUSG00000028165	Cisd2	1500009M05Rik|1500026J14Rik|1500031D15Rik|AI848398|B630006A20Rik|Miner1|Naf-1|Noxp70|Zcd2	CDGSH iron sulfur domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-126904160-1	chr10	126904060	126904260	+	540.0	f1_balb.idr	Intergenic	MTD|LTR|ERVL-MaLR	-2789.0	NM_001358970	68876.0	Mm.276769	NM_026858	ENSMUSG00000025436	Atp23	1110068E08Rik|2410012H02Rik|Xrcc6bp1	ATP23 metallopeptidase and ATP synthase assembly factor homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141147540-4	chr4	141147442	141147642	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172518)	promoter-TSS (NM_172518)	-380.0	NM_172518	213499.0	Mm.28865	NM_172518	ENSMUSG00000028920	Fbxo42	6720460I06Rik|mKIAA1332	F-box protein 42	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-26907361-4	chr2	26907295	26907495	+	868.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011513, exon 3 of 3)	3' UTR (NM_011513, exon 3 of 3)	3247.0	NM_011513	20933.0	Mm.397932	NM_011513	ENSMUSG00000015776	Med22	AW212655|AW558812|Surf-5|Surf5	mediator complex subunit 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-51095728-6	chr14	51095547	51095747	+	890.944458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007447)	promoter-TSS (NM_007447)	-353.0	NM_007447	11727.0	Mm.202665	NM_007447	ENSMUSG00000072115	Ang	AI385586|Ang1|Rnase5|Rnase5a	angiogenin, ribonuclease, RNase A family, 5	protein-coding	-2.05752322593321	-2.15521190974092	-2.16307242109104	-2.16952927915413	-2.17938029103484	-2.15350850414045	-2.16129297361887	-2.16837350464794	-0.683654500252594	0.846597994014493	1
Merged-chr12-40508051-1	chr12	40507951	40508151	+	595.0	f0_balb.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	61998.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-50107405-6	chr11	50107239	50107439	+	859.944458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290750, intron 7 of 7)	intron (NM_001290750, intron 7 of 7)	-24021.0	NM_001290759	76795.0	Mm.290975	NM_029745	ENSMUSG00000036644	Tbc1d9b	-	TBC1 domain family, member 9B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-82217790-2	chr16	82217690	82217890	+	764.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	1017093.0	NM_010954	17968.0	Mm.433941	NM_010954	ENSMUSG00000022762	Ncam2	Ncam-2|Ocam|RNCAM	neural cell adhesion molecule 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-39267155-4	chr10	39267032	39267232	+	980.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-102667.0	NM_001122892	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-88248825-2	chr17	88248725	88248925	+	843.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	123313.0	NM_001190356	225058.0	Mm.312053	NM_001190356		Gm4832	EG225058	predicted gene 4832	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153052737-2	chr2	153052637	153052837	+	567.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001011732, exon 2 of 3)	exon (NM_001011732, exon 2 of 3)	-13218.0	NM_145536	228788.0	Mm.299979	NM_145536	ENSMUSG00000027474	Ccm2l	-	cerebral cavernous malformation 2-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-71581052-7	chr2	71580966	71581166	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_039557, intron 2 of 3).2	intron (NR_039557, intron 2 of 3).2	-34312.0	NM_010054	13392.0	Mm.3896	NM_010054	ENSMUSG00000023391	Dlx2	AW121999|Dlx-2|Tes-1	distal-less homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-92786114-2	chr6	92786014	92786214	+	642.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175314, intron 28 of 29)	intron (NM_175314, intron 28 of 29)	-79930.0	NM_001081146	243548.0	Mm.248820	NM_001081146	ENSMUSG00000030020	Prickle2	6230400G14Rik|6720451F06Rik|mpk2	prickle planar cell polarity protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-32516129-2	chr9	32516029	32516229	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008026, intron 1 of 8)	intron (NM_008026, intron 1 of 8)	25323.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-16254386-2	chr19	16254286	16254486	+	587.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008139, intron 2 of 6)	intron (NM_008139, intron 2 of 6)	60618.0	NR_105832	102465218.0		NR_105832	ENSMUSG00000098718	Mir496b	Gm28028|mmu-mir-496b	microRNA 496b	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-84284597-4	chr1	84284508	84284708	+	958.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001003948)	promoter-TSS (NM_001003948)	37.0	NM_001003948	98496.0	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4|P-CLI1	phosphotyrosine interaction domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-55696207-3	chr13	55696116	55696316	+	928.25	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181278, intron 1 of 1)	B4A|SINE|B4	3092.0	NM_181278	78521.0	Mm.28449	NM_181278	ENSMUSG00000045767	B230219D22Rik	AA119856|D530037I19Rik	RIKEN cDNA B230219D22 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-75203018-4	chr3	75202951	75203151	+	905.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	-59279.0	NM_172515	213234.0	Mm.80075	NM_172515	ENSMUSG00000034151	Zbbx	4931432L23	zinc finger, B-box domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99818483-2	chr7	99818356	99818556	+	827.041626	f1_balb.idr|f1_c57bl6.idr	intron (NM_016720, intron 2 of 2)	MMVL30-int|LTR|ERV1	9961.0	NM_016720	50877.0	Mm.103703	NM_016720	ENSMUSG00000035239	Neu3	-	neuraminidase 3	protein-coding	3.01206338387954	1.64284255859653	3.00265507373983	1.27591107915907	1.47404669306168	2.55042919431761	2.33139512538188	3.06865395969329	0.0164765409818061	0.986618062768978	0.998431161219273
Merged-chr10-60745105-4	chr10	60744983	60745183	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023596, intron 2 of 5)	intron (NM_023596, intron 2 of 5)	7699.0	NM_023596	71279.0	Mm.284462	NM_023596	ENSMUSG00000020100	Slc29a3	4933435C21Rik|AW987637|Ent3	solute carrier family 29 (nucleoside transporters), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-48293798-2	chr17	48293698	48293898	+	602.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-6240.0	NM_001033405	328833.0	Mm.329104	NM_001033405	ENSMUSG00000071068	Treml2	AW049306|Gm750|Tlt2	triggering receptor expressed on myeloid cells-like 2	protein-coding	-1.52696403314699	-1.49523967873556	-1.5048333853602	-1.51271394162622	-1.52473704212565	-1.49316068248889	-1.50266158046844	-1.06847079017215	2.01069003169785	0.564432837776867	1
Merged-chr13-73770241-2	chr13	73770141	73770341	+	642.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360694, intron 1 of 24)	intron (NM_001360694, intron 1 of 24)	6544.0	NM_011390	20499.0	Mm.275800	NM_011390	ENSMUSG00000017756	Slc12a7	AA408796|D13Ertd261e|Kcc4	solute carrier family 12, member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-64600860-7	chr17	64600693	64600893	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008549)	promoter-TSS (NM_008549)	-856.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5741341-2	chr19	5741241	5741441	+	664.5	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_008520, exon 2 of 28)	5' UTR (NM_008520, exon 2 of 28)	437.0	NM_008520	16998.0	Mm.182396	NM_008520	ENSMUSG00000024940	Ltbp3	Ltbp2|mFLJ00070	latent transforming growth factor beta binding protein 3	protein-coding	-1.01619048107133	-0.995033651274249	-1.00815691281228	-1.0117845606299	-0.146812645560773	-0.992189785753965	-1.00518609405377	-1.01132261587602	3.17967657538059	0.326742161226751	1
Merged-chr12-77100615-3	chr12	77100521	77100721	+	780.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-137483.0	NM_001252614	53618.0	Mm.35628	NM_016893	ENSMUSG00000021065	Fut8	-	fucosyltransferase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-123923269-4	chr9	123923193	123923393	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	45399.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89773947-1	chr3	89773847	89774047	+	1000.0	f0_balb.idr	promoter-TSS (NR_130957)	promoter-TSS (NR_130957)	338.0	NM_027315	70093.0	Mm.41438	NM_027315	ENSMUSG00000042572	Ube2q1	1110002C01Rik|2310012M18Rik|AI854014|Gtap|NICE-5|PRO3094|Ube2q	ubiquitin-conjugating enzyme E2Q family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-24030785-4	chr5	24030680	24030880	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053090)	promoter-TSS (NM_053090)	-90.0	NM_053090	84652.0	Mm.304976	NM_053090	ENSMUSG00000028995	Fam126a	AB030242|Drctnnb1a	family with sequence similarity 126, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-96332974-4	chr10	96332875	96333075	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	106768.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134461345-4	chr6	134461219	134461419	+	999.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008514, intron 17 of 22)	intron (NM_008514, intron 17 of 22)	46891.0	NM_001355686	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	4.24734787779939	3.60718918548423	3.86807085344486	4.62242328403346	5.83445013216607	5.37737749331088	5.89849895149343	6.31198258084604	2.05042395805395	3.23211593140757e-09	4.54440550137047e-07
Merged-chr5-139252234-4	chr5	139252122	139252322	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026269)	promoter-TSS (NM_026269)	-102.0	NM_001359238	67604.0	Mm.270137	NM_026269	ENSMUSG00000025858	Get4	1110007L15Rik|AW412535|Cee	golgi to ER traffic protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-77921117-4	chr9	77921019	77921219	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134255, intron 1 of 7)	intron (NM_134255, intron 1 of 7)	3754.0	NM_134255	68801.0	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-91788346-2	chr12	91788246	91788446	+	595.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	-1910.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-19933818-4	chr10	19933649	19933849	+	998.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008580)	promoter-TSS (NM_008580)	-777.0	NM_008580	26408.0	Mm.6595	NM_008580	ENSMUSG00000071369	Map3k5	7420452D20Rik|ASK|ASK1|MAPKKK5|Mekk5	mitogen-activated protein kinase kinase kinase 5	protein-coding	3.45912286309172	3.52140153686328	4.01978902460367	3.64473625058817	4.15186672637204	3.82242257677822	4.04930922774667	3.99109422035078	0.478832324622109	0.303163747180675	0.805462835517226
Merged-chr18-80477287-2	chr18	80477187	80477387	+	834.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa-int|LTR|ERVL-MaLR	-7620.0	NM_026295	67655.0	Mm.312893	NM_026295	ENSMUSG00000033323	Ctdp1	4930563P03Rik|AW553592	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-3630990-4	chr2	3630882	3631082	+	776.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-82476.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-34392502-2	chr7	34392402	34392602	+	569.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-2797.0	NM_025948	67070.0	Mm.276503	NM_025948	ENSMUSG00000066568	Lsm14a	2700023B17Rik|AA407828|AU017544|Tral|mRAP55A	LSM14A mRNA processing body assembly factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-123872388-2	chr9	123872288	123872488	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28|LTR|ERVL	-10359.0	NM_011798	23832.0	Mm.390241	NM_011798	ENSMUSG00000060509	Xcr1	Ccxcr1|Gpr5|mXcr1	chemokine (C motif) receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-35475086-4	chr2	35474976	35475176	+	893.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-13627.0	NM_001145821	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-90228269-2	chr9	90228169	90228369	+	747.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 4 of 12)	ORR1F|LTR|ERVL-MaLR	42500.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118716481-1	chr9	118716381	118716581	+	629.0	f0_balb.idr	intron (NM_001113514, intron 1 of 13)	intron (NM_001113514, intron 1 of 13)	4789.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-119240161-4	chr10	119240064	119240264	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027994)	promoter-TSS (NM_027994)	-109.0	NM_027994	71902.0	Mm.203965	NM_027994	ENSMUSG00000020114	Cand1	2310038O07Rik|6330512O03Rik|AI195005|AI846556|D10Ertd516e|Tp120a|mKIAA0829	cullin associated and neddylation disassociated 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-25501228-2	chr9	25501128	25501328	+	921.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 2 of 7)	intron (NM_026189, intron 2 of 7)	19631.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-72487184-4	chr8	72487081	72487281	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177766, intron 4 of 5)	intron (NM_177766, intron 4 of 5)	5433.0	NM_177766	270066.0	Mm.291461	NM_177766	ENSMUSG00000019731	Slc35e1	6030458H05|AA408278	solute carrier family 35, member E1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-134533759-1	chr4	134533659	134533859	+	561.0	f1_c57bl6.idr	intron (NM_029759, intron 1 of 6)	intron (NM_029759, intron 1 of 6)	1337.0	NM_001355188	76824.0	Mm.30153	NM_029759	ENSMUSG00000046671	Mtfr1l	2410166I05Rik|AI480750|Fam54b	mitochondrial fission regulator 1-like	protein-coding	1.61438470589253	0.978917569037275	1.76152226340314	1.98624352033069	1.11406303822963	0.982741113176332	1.77659880388209	1.60356432546311	-0.745147806135246	0.55134921722492	0.959195395405638
Merged-chr19-55702936-4	chr19	55702828	55703028	+	922.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045318)	promoter-TSS (NR_045318)	-724.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	3.37530698445644	2.7194321672477	1.88173907874183	2.9103421883398	2.06960818951798	1.72600841376986	3.09705302699452	1.61739162869761	-1.07200807537205	0.221433297847126	0.712904304356839
Merged-chr19-42090296-4	chr19	42090171	42090371	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145501)	promoter-TSS (NM_145501)	-164.0	NM_145501	84095.0	Mm.117037	NM_145501	ENSMUSG00000025178	Pi4k2a	Pi4k2	phosphatidylinositol 4-kinase type 2 alpha	protein-coding	0.17949921324129	0.246414110184991	1.89570623975619	0.208947077467972	0.184021050972765	0.250943928735371	2.19666944598001	0.211922988303951	0.489617994187493	0.881108510792986	0.998431161219273
Merged-chr17-5770458-4	chr17	5770339	5770539	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28218.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75550039-4	chr11	75549939	75550139	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199284, intron 5 of 13)	intron (NM_001199284, intron 5 of 13)	-1390.0	NR_039553	100628624.0		NR_039553	ENSMUSG00000093100	Mir3971	mmu-mir-3971|mu-mir-3971	microRNA 3971	ncRNA	6.66250207289311	5.78164469412419	6.73390260541123	6.37558782993543	6.64134523164727	6.27304649143408	6.64032673021107	6.82850715471768	0.184217252096139	0.423032291011793	0.900322118218157
Merged-chr9-31446125-3	chr9	31446029	31446229	+	975.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144936, intron 1 of 5)	intron (NM_144936, intron 1 of 5)	18109.0	NM_144936	235135.0	Mm.390134	NM_144936	ENSMUSG00000041737	Tmem45b	BC018222	transmembrane protein 45b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167737193-2	chr2	167737093	167737293	+	580.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	46016.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-43936562-2	chr1	43936462	43936662	+	614.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009418, intron 1 of 29)	intron (NM_009418, intron 1 of 29)	2568.0	NM_009418	22019.0	Mm.401675	NM_009418	ENSMUSG00000041763	Tpp2	TPP-2|TppII	tripeptidyl peptidase II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-63590634-4	chr4	63590520	63590720	+	915.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4|LINE|L1	10144.0	NM_001354647	670833.0	Mm.32213	NM_001354647	ENSMUSG00000084782	Gm11213	-	predicted gene 11213	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35384920-1	chr17	35384820	35385020	+	579.0	f1_c57bl6.idr	TTS (NM_001143689)	TTS (NM_001143689)	5303.0	NM_001143689	15015.0	Mm.464284	NM_001143689	ENSMUSG00000035929	H2-Q4	H-2Q4|H2-Gs10|Qa-4|Qa4|Qat-4|Qb-1|Qb1	histocompatibility 2, Q region locus 4	protein-coding	-0.824304660665838	-0.88927760145927	-1.06999218569642	-1.07585713136635	-0.818287444740617	-1.05685314174029	-1.06754755566929	-1.07554359523961	-0.576351167167816	0.850199307881881	1
Merged-chr9-62415412-2	chr9	62415312	62415512	+	610.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	74069.0	NM_009672	11737.0	Mm.269088	NM_009672	ENSMUSG00000032249	Anp32a	Anp32|I1PP2A|LANP|PHAP1|W91701|pp32	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-106158368-2	chr8	106158268	106158468	+	724.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357319, intron 2 of 5)	B3|SINE|B2	8014.0	NM_001357319	192654.0	Mm.284770	NM_133792	ENSMUSG00000031903	Pla2g15	ACS|C87498|LLPL|Lpla2|Lypla3	phospholipase A2, group XV	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-58746754-2	chr15	58746654	58746854	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	76673.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-54214842-2	chr11	54214742	54214942	+	674.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1554.0	NR_045506	71056.0	Mm.56332	NR_045506	ENSMUSG00000086209	4933405E24Rik	-	RIKEN cDNA 4933405E24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167659312-4	chr2	167659228	167659428	+	934.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145538, intron 1 of 5)	intron (NM_145538, intron 1 of 5)	2216.0	NM_145538	407243.0	Mm.4863	NM_145538	ENSMUSG00000090213	Tmem189	AI840826|Kua	transmembrane protein 189	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-9129593-2	chr9	9129493	9129693	+	645.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027823, intron 3 of 22)	intron (NM_027823, intron 3 of 22)	-106695.0	NR_045754	100579151.0	Mm.412450	NR_045754	ENSMUSG00000085253	Gm16833	-	predicted gene, 16833	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-84243307-4	chr12	84243191	84243391	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24410.0	NM_001163501	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124013079-4	chr5	124012973	124013173	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177876, intron 1 of 3)	intron (NM_177876, intron 1 of 3)	16221.0	NR_105999	102465625.0		NR_105999	ENSMUSG00000098454	Mir7032	Gm27309|mmu-mir-7032	microRNA 7032	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-132115941-4	chr3	132115858	132116058	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020265, intron 1 of 3)	C-rich|Low_complexity|Low_complexity	30666.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-63075527-2	chr14	63075427	63075627	+	840.375	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20454.0	NR_046019	72609.0	Mm.387101	NR_046019		2700070H01Rik	-	RIKEN cDNA 2700070H01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-45298256-4	chr9	45298175	45298375	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20825.0	NM_001013373	214531.0	Mm.394987	NM_001013373	ENSMUSG00000037129	Tmprss13	BC010843|Tpmrss13	transmembrane protease, serine 13	protein-coding	2.76383460346143	3.21640826526159	1.89204308262418	2.69404231626851	3.27077870329338	2.60509047210162	3.84141172540352	3.73104355213605	1.23099615774554	0.0706427961231076	0.399798239568418
Merged-chr11-110697213-4	chr11	110697114	110697314	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	217874.0	NM_001356346	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-22868200-1	chr5	22868100	22868300	+	751.666687	f1_c57bl6.idr	intron (NM_001359998, intron 1 of 3)	intron (NM_001359998, intron 1 of 3)	-121316.0	NR_027362	330052.0	Mm.459265	NR_027362	ENSMUSG00000105076	A930003O13Rik	-	RIKEN cDNA A930003O13 gene	ncRNA	3.19232099219319	2.23140917753664	3.77394618238175	3.3009531895595	2.28140245832858	2.24917346650299	1.44545629025783	2.40768412611955	-2.0772321699885	0.00864210362195269	0.0980037422081175
Merged-chr12-75415175-4	chr12	75415075	75415275	+	943.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175644, intron 2 of 2)	intron (NM_175644, intron 2 of 2)	1606.0	NM_175644	217674.0	Mm.252250	NM_175644	ENSMUSG00000048982	Gphb5	OGH|Zlut1	glycoprotein hormone beta 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-121427894-4	chr14	121427801	121428001	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-48671.0	NM_145465	223255.0	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-103376576-4	chr5	103376472	103376672	+	984.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29974.0	NR_152117	75519.0	Mm.416851	NR_152117	ENSMUSG00000105426	1700021F02Rik	Gm42618	RIKEN cDNA 1700021F02 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-58747928-2	chr15	58747828	58748028	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28|LTR|ERVL	75499.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-103401319-2	chr14	103401219	103401419	+	643.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-54519.0	NM_207215	105689.0	Mm.6478	NM_207215	ENSMUSG00000033004	Mycbp2	AU023734|AW107953|AW546647|C130061D10Rik|Pam|Phr1|R75243	MYC binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-86490118-4	chr6	86490013	86490213	+	934.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1886.0	NR_040292	381792.0	Mm.333223	NR_040292	ENSMUSG00000101655	2310040G24Rik	-	RIKEN cDNA 2310040G24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115213269-1	chr11	115213169	115213369	+	865.0	f1_c57bl6.idr	intron (NM_001033393, intron 8 of 9)	MTC|LTR|ERVL-MaLR	25782.0	NM_001033393	320534.0	Mm.260587	NM_001033393	ENSMUSG00000045980	Tmem104	C630005D06Rik|mFLJ00021	transmembrane protein 104	protein-coding	1.51913675354135	1.04651510501482	2.71386491630862	1.75295388718664	2.31840893646103	1.89509806134482	1.28507235412479	1.00289030692353	-0.469929687564208	0.692785268364577	0.99740158133691
Merged-chr7-25717775-2	chr7	25717675	25717875	+	551.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028771, intron 1 of 4)	ID_B1|SINE|B4	1278.0	NM_028771	52132.0	Mm.278798	NM_028771	ENSMUSG00000002608	Ccdc97	1200014H14Rik|2810446P04Rik|AA545218|D7Ertd462e	coiled-coil domain containing 97	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-60852557-4	chr1	60852453	60852653	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56472.0	NM_009843	12477.0	Mm.390	NM_009843	ENSMUSG00000026011	Ctla4	Cd152|Ctla-4|Ly-56	cytotoxic T-lymphocyte-associated protein 4	protein-coding	4.65650811714416	5.1931493977483	4.2376965955425	5.01820847336956	4.1700977801945	4.94891827703147	4.96456356900048	5.00755394481686	-0.0169155876016734	0.963742696692195	0.998431161219273
Merged-chr11-116007369-2	chr11	116007266	116007466	+	667.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_016905)	TTS (NM_016905)	5353.0	NM_016905	14635.0	Mm.2820	NM_016905	ENSMUSG00000020766	Galk1	AA409894|GALK|Gk|Glk|Glk1	galactokinase 1	protein-coding	0.772766388240492	0.891215018613652	0.853287944473141	1.35053784519289	0.480336666721532	1.17937559023646	0.500265543967157	0.492111451613635	-1.46009616212336	0.375858716398705	1
Merged-chr1-84002860-3	chr1	84002746	84002946	+	931.755554	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	216115.0	NR_105771	102465181.0		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-10740346-4	chr17	10740233	10740433	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027032, intron 2 of 4)	intron (NM_027032, intron 2 of 4)	99858.0	NM_027032	69310.0	Mm.18889	NM_027032	ENSMUSG00000037196	Pacrg	1700008H23Rik	PARK2 co-regulated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132072955-2	chr4	132072855	132073055	+	721.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183428)	promoter-TSS (NM_183428)	-858.0	NM_183428	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59562882-1	chr15	59562782	59562982	+	546.0	f1_c57bl6.idr	intron (NM_026746, intron 4 of 6)	B1_Mur4|SINE|Alu	-85772.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	-1.3681463318974	-1.33624156493372	-1.34650167276047	-0.80669348975676	-1.36769697821496	-1.33401815676661	-1.34417900924365	-1.3534210303531	-2.3580830592467	0.49586638340111	1
Merged-chr6-87748180-2	chr6	87748080	87748280	+	941.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159697, intron 2 of 7)	intron (NM_001159697, intron 2 of 7)	17311.0	NM_001159697	58229.0	Mm.333229	NM_021418	ENSMUSG00000068263	Efcc1	Ccdc48	EF hand and coiled-coil domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-60605462-4	chr13	60605372	60605572	+	907.785706	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	3261.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	0.563281267241048	0.334687300270485	0.492305356494809	0.476005899841661	0.765463891713709	0.518076255536525	0.496953345663793	0.826930778889474	1.36830078517269	0.406561246558487	1
Merged-chr16-48831497-3	chr16	48831391	48831591	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11061.0	NM_020509	57262.0	Mm.441868	NM_020509	ENSMUSG00000061100	Retnla	1810019L16Rik|Fizz-1|Fizz1|HIMF|RELM-alpha|RELMa|RELMalpha|Xcp2	resistin like alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139722885-2	chr5	139722757	139722957	+	850.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_174850, intron 1 of 16)	intron (NM_174850, intron 1 of 16)	13476.0	NM_174850	231830.0	Mm.240510	NM_174850	ENSMUSG00000036718	Micall2	A930021H16Rik|JRAB|MICAL-L2|mFLJ00139	MICAL-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-125343026-2	chr5	125342999	125343199	+	752.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2005.0	NM_001205083	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47793520-4	chr17	47793441	47793641	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7797.0	NM_011549	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-119690237-4	chr13	119690131	119690331	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145942)	promoter-TSS (NM_145942)	-120.0	NM_145942	208715.0	Mm.61526	NM_145942	ENSMUSG00000093930	Hmgcs1	B130032C06Rik	3-hydroxy-3-methylglutaryl-Coenzyme A synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150033491-2	chr4	150033391	150033591	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24468.0	NM_173371	100198.0	Mm.22183	NM_173371	ENSMUSG00000028980	H6pd	AI785303|G6pd1|Gpd-1|Gpd1	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	protein-coding	-0.121516223633547	-0.455824558562068	-0.459092583099957	-0.311100785803492	-0.331819428889638	-0.455084892144564	-0.0293912954196616	-0.46116209979058	0.247691789007519	0.919452481797171	1
Merged-chr5-30915655-2	chr5	30915551	30915751	+	889.1999509999999	f1_balb.idr|f1_c57bl6.idr	exon (NM_133918, exon 3 of 8)	exon (NM_133918, exon 3 of 8)	1865.0	NM_133918	100952.0	Mm.286375	NM_133918	ENSMUSG00000029163	Emilin1	5830419M17Rik|AW229038|BB105748|EMILIN-1|gp115	elastin microfibril interfacer 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-5236724-4	chr15	5236625	5236825	+	771.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001136079, intron 2 of 2)	intron (NM_001136079, intron 2 of 2)	7462.0	NM_001136079	19219.0	Mm.18509	NM_008965	ENSMUSG00000039942	Ptger4	EP4|Ptgerep4	prostaglandin E receptor 4 (subtype EP4)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-92106465-4	chr5	92106360	92106560	+	923.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359197, intron 1 of 10)	intron (NM_001359197, intron 1 of 10)	-22716.0	NM_001080795	23881.0	Mm.290530	NM_011816	ENSMUSG00000029405	G3bp2	AA409541|E430034L04Rik|G3BP|mKIAA0660	GTPase activating protein (SH3 domain) binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166697943-2	chr2	166697843	166698043	+	768.424988	f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	15889.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-94273400-4	chr2	94273306	94273506	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-12007.0	NR_030431	735259.0		NR_030431	ENSMUSG00000076335	Mir670	Mirn670|mir-670|mmu-mir-670	microRNA 670	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167077422-2	chr2	167077322	167077522	+	703.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12129.0	NR_028540	100217443.0		NR_028540		Snord12	MBII-99	small nucleolar RNA, C/D box 12	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-49853839-1	chr16	49853739	49853939	+	694.0	f0_balb.idr	Intergenic	Intergenic	-1815.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119264533-1	chr11	119264433	119264633	+	580.0	f1_c57bl6.idr	3' UTR (NM_175430, exon 19 of 19)	3' UTR (NM_175430, exon 19 of 19)	-3430.0	NM_001159324	14387.0	Mm.4793	NM_008064	ENSMUSG00000025579	Gaa	E430018M07Rik	glucosidase, alpha, acid	protein-coding	0.603601125757691	0.860126241148401	0.462188328548782	1.04091110404674	1.45091081121801	0.868633848570504	0.464289968158243	0.456092912073586	0.6276732122348	0.707439861150806	1
Merged-chr5-29737090-4	chr5	29737007	29737207	+	953.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359198, intron 1 of 8)	intron (NM_001359198, intron 1 of 8)	-1171.0	NR_028426	332993.0	Mm.473746	NR_028426		Gm5129	EG332993	predicted gene 5129	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-146657644-4	chr3	146657533	146657733	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6316.0	NM_029144	75015.0	Mm.250432	NM_029144	ENSMUSG00000048652	4930503B20Rik	1700013A07Rik|1700095G21Rik|4930483N21Rik|Gm1652|Samd13	RIKEN cDNA 4930503B20 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124477578-4	chr6	124477495	124477695	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12811.0	NM_153508	232370.0	Mm.193701	NM_153508	ENSMUSG00000008153	Clstn3	CSTN3|Cs3|Cst-3|alc-beta	calsyntenin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-90034123-4	chr9	90034017	90034217	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20150.0	NM_007801	13036.0	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	3.74794787864312	4.06642142005355	3.35118557082113	2.29912803190509	3.11352785837846	2.96062481552903	2.19220150454822	3.50018315062925	-0.779640069178841	0.246573291467094	0.74563204527445
Merged-chr4-41463793-2	chr4	41463693	41463893	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_024241, intron 1 of 12)	intron (NM_024241, intron 1 of 12)	1055.0	NM_024241	109242.0	Mm.370288	NM_024241	ENSMUSG00000028438	Kif24	4933425J19Rik|9430029L23Rik	kinesin family member 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-79812673-2	chr12	79812573	79812773	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 10 of 10)	intron (NM_009014, intron 10 of 10)	112060.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-15727773-4	chr6	15727660	15727860	+	992.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175088, intron 2 of 4)	intron (NM_175088, intron 2 of 4)	7099.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-58797086-4	chr2	58796987	58797187	+	835.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41903.0	NM_029692	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-86064652-2	chr5	86064577	86064777	+	663.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001345903, intron 1 of 19)	intron (NM_001345903, intron 1 of 19)	906.0	NM_001345902	12617.0	Mm.4649	NM_007683	ENSMUSG00000029253	Cenpc1	CENP-C|Cenpc	centromere protein C1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78948619-1	chr15	78948519	78948719	+	669.0	f1_c57bl6.idr	intron (NM_001039156, intron 2 of 24)	intron (NM_001039156, intron 2 of 24)	895.0	NM_001039155	110253.0	Mm.123714	NM_138579	ENSMUSG00000033088	Triobp	AI428493|EST478828|Tara|mKIAA1662	TRIO and F-actin binding protein	protein-coding	0.745227194580096	1.53876654734499	1.88925447941832	1.29897197415673	0.748466126207376	1.24107982200471	1.72006176510733	0.76889747749265	-0.858046389994684	0.550500441147058	0.958882219733107
Merged-chr4-62519984-4	chr4	62519872	62520072	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008525)	promoter-TSS (NM_008525)	-63.0	NM_001276446	17025.0	Mm.6988	NM_008525	ENSMUSG00000028393	Alad	ALADH|Lv	aminolevulinate, delta-, dehydratase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-137048762-4	chr4	137048635	137048835	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198248)	promoter-TSS (NM_198248)	-40.0	NM_198248	230848.0	Mm.31068	NM_198248	ENSMUSG00000060862	Zbtb40	BC059177|C230087D24|Gm571|mKIAA0478	zinc finger and BTB domain containing 40	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-127850257-1	chr1	127850157	127850357	+	587.0	f0_balb.idr	Intergenic	Intergenic	-9967.0	NM_011737	22625.0	Mm.246566	NM_011737	ENSMUSG00000051590	Map3k19	Ysk4	mitogen-activated protein kinase kinase kinase 19	protein-coding	0.832144732354751	0.448247911581155	0.932251562324298	1.29127955657205	0.422142207043496	0.450274895060385	0.441207607779723	1.12176479362305	-1.32133891455684	0.457822508338294	1
Merged-chr12-85573112-2	chr12	85573012	85573212	+	547.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25993.0	NM_001205052	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70658727-2	chr11	70658627	70658827	+	552.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001136062, intron 5 of 11)	intron (NM_001136062, intron 5 of 11)	1551.0	NM_007933	13808.0	Mm.251322	NM_007933	ENSMUSG00000060600	Eno3	Eno-3|MSE	enolase 3, beta muscle	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-11376609-3	chr19	11376528	11376728	+	974.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310331, intron 1 of 6)	intron (NM_001310331, intron 1 of 6)	1140.0	NM_001310331	666907.0		NM_001310331	ENSMUSG00000101389	Ms4a4a	EG666907	membrane-spanning 4-domains, subfamily A, member 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-88285354-5	chr7	88285204	88285404	+	861.995544	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009982, intron 2 of 6)	intron (NM_009982, intron 2 of 6)	7219.0	NM_001311790	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119709414-4	chr11	119709319	119709519	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028898, intron 3 of 33)	intron (NM_028898, intron 3 of 33)	106514.0	NM_028898	74370.0	Mm.209933	NM_028898	ENSMUSG00000025583	Rptor	4932417H02Rik|Rap|Raptor|mKIAA1303	regulatory associated protein of MTOR, complex 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-84750863-2	chr12	84750763	84750963	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22249.0	NM_023409	67963.0	Mm.282556	NM_023409	ENSMUSG00000021242	Npc2	2700012J19Rik|AA408070|AU045843|HE1	NPC intracellular cholesterol transporter 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-72366998-1	chr4	72366898	72367098	+	623.0	f0_balb.idr	Intergenic	MLT2B3|LTR|ERVL	165754.0	NR_027923	68285.0	Mm.37541	NR_027923		C630043F03Rik	AI851307	RIKEN cDNA C630043F03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34647617-4	chr17	34647520	34647720	+	973.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017406, intron 1 of 17)	CpG	474.0	NM_017406	12915.0	Mm.4068	NM_017406	ENSMUSG00000015461	Atf6b	AA617266|ATF6beta|Creb-rp|Crebl1	activating transcription factor 6 beta	protein-coding	3.22198243363625	3.20905930213496	3.20942133468133	3.21724732919879	3.8720113731237	4.13401331017575	3.82210457180732	3.6426532157536	1.01263555283795	0.0469321531402313	0.313525597648382
Merged-chr3-8666046-2	chr3	8665946	8666146	+	746.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010423, intron 3 of 4)	intron (NM_010423, intron 3 of 4)	992.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-49840983-2	chr16	49840883	49841083	+	550.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR18_MM|LTR|ERVK	-14671.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-49125598-2	chr7	49125498	49125698	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_154465, intron 3 of 3)	intron (NR_154465, intron 3 of 3)	36560.0	NR_154465	108167511.0	Mm.400599	NR_154465		9130015G15Rik	-	RIKEN cDNA 9130015G15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-40995071-4	chr8	40994983	40995183	+	915.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005863, intron 12 of 13)	G-rich|Low_complexity|Low_complexity	-22385.0	NR_015457	78849.0	Mm.440930	NR_015457	ENSMUSG00000084960	B430010I23Rik	-	RIKEN cDNA B430010I23 gene	ncRNA	2.85866233315391	2.57278997243654	1.76132233833541	2.41090747109618	2.88258191588677	1.83496442036312	3.4679298843868	3.24251814690446	0.996221227965879	0.209976702518889	0.69949048545273
Merged-chr17-57077829-3	chr17	57077726	57077926	+	892.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153551, intron 1 of 23)	intron (NM_153551, intron 1 of 23)	684.0	NM_153551	70785.0	Mm.284447	NM_153551	ENSMUSG00000002668	Dennd1c	4432409M07Rik	DENN/MADD domain containing 1C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107626883-3	chr9	107626751	107626951	+	876.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008138, intron 1 of 8)	intron (NM_008138, intron 1 of 8)	8491.0	NM_008138	14678.0	Mm.196464	NM_008138	ENSMUSG00000032562	Gnai2	C76432|Galphai2|Gia|Gnai-2	guanine nucleotide binding protein (G protein), alpha inhibiting 2	protein-coding	3.57755032853911	3.10296609757074	3.67822805547935	3.20685683256147	3.65836794688027	3.60746086500233	2.61612821475738	2.53131179861202	-0.321420311636337	0.60218023208624	0.973565005745828
Merged-chr17-17628937-2	chr17	17628837	17629037	+	722.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVB3_1-I_MM-int|LTR|ERVK	-4448.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-91140919-2	chr10	91140819	91141019	+	550.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-16956.0	NM_133668	18674.0	Mm.298	NM_133668	ENSMUSG00000061904	Slc25a3	5730556H19Rik|PTP|Phc	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-18424148-2	chr16	18424048	18424248	+	649.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_007744, intron 1 of 4)	B4|SINE|B4	-2269.0	NM_001353143	26462.0	Mm.390906	NM_013711	ENSMUSG00000075704	Txnrd2	AA118373|ESTM573010|TGR|Tr3|Trxr2|Trxrd2	thioredoxin reductase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-157063586-4	chr2	157063478	157063678	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164663, intron 1 of 14)	intron (NM_001164663, intron 1 of 14)	15687.0	NM_001164663	320706.0	Mm.79466	NM_001164663	ENSMUSG00000055485	Soga1	9830001H06Rik|AI426038|D430036N24Rik|Soga	suppressor of glucose, autophagy associated 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28385104-2	chr7	28385004	28385204	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_026042)	TTS (NM_026042)	-5876.0	NM_011756	22695.0	Mm.389856	NM_011756	ENSMUSG00000044786	Zfp36	Gos24|Nup475|TIS11D|TISII|Tis11|Ttp|Zfp-36	zinc finger protein 36	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-8004172-3	chr14	8004077	8004277	+	697.966675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001331064, intron 1 of 8)	intron (NM_001331064, intron 1 of 8)	1211.0	NM_001331064	66082.0	Mm.181473	NM_025341	ENSMUSG00000025277	Abhd6	0610041D24Rik|AA673485|AV065425	abhydrolase domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-66277133-7	chr9	66277025	66277225	+	961.157166	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73325.0	NM_145617	235439.0	Mm.244179	NM_145617	ENSMUSG00000038664	Herc1	2810449H11Rik|B230218H07|D130015N03Rik|tbl	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55496775-2	chr19	55496675	55496875	+	637.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360431, intron 6 of 8)	intron (NM_001360431, intron 6 of 8)	180718.0	NM_001293686	53611.0	Mm.258637	NM_016862	ENSMUSG00000024983	Vti1a	1110014F16Rik|1110018K19Rik|4921537J05Rik|MVti1|MVti1a|Vti1|Vti1-rp2	vesicle transport through interaction with t-SNAREs 1A	protein-coding	0.135991283364948	1.08566508878775	0.15387647969952	0.147211962478529	0.137673312923621	0.164324683168753	1.0337403258147	0.507105241298154	0.267602689342365	0.896486319369844	1
Merged-chr8-85083665-4	chr8	85083570	85083770	+	985.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010764, intron 1 of 23)	intron (NM_010764, intron 1 of 23)	401.0	NM_010764	17159.0	Mm.4219	NM_010764	ENSMUSG00000005142	Man2b1	AW107687|LAMAN	mannosidase 2, alpha B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-81858096-2	chr12	81857996	81858196	+	658.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1934.0	NM_018814	54604.0	Mm.86584	NM_018814	ENSMUSG00000021140	Pcnx	2900024E21Rik|3526401J03Rik|AF096286|AI327143|AI413187|Pcnx1|Pcnxl1	pecanex homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-120603538-2	chr5	120603438	120603638	+	602.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029408, intron 3 of 4)	intron (NM_029408, intron 3 of 4)	9051.0	NM_029096	100764.0	Mm.9654	NM_029096	ENSMUSG00000029600	Rita1	1110008J03Rik|AI853657|C86297|Rita	RBPJ interacting and tubulin associated 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-20733995-1	chr5	20733895	20734095	+	540.0	f1_c57bl6.idr	Intergenic	MTD-int|LTR|ERVL-MaLR	148129.0	NM_172992	68770.0	Mm.86410	NM_172992	ENSMUSG00000039987	Phtf2	1110054G21Rik|9530062N20Rik|AI447096|C77923	putative homeodomain transcription factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-48242607-3	chr4	48242506	48242706	+	867.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355184, intron 2 of 10)	MER5A|DNA|hAT-Charlie	-29391.0	NR_035484	100316708.0		NR_035484	ENSMUSG00000087844	Mir1958	mmu-mir-1958	microRNA 1958	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70541062-2	chr11	70540962	70541162	+	953.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361935, intron 2 of 23)	intron (NM_001361935, intron 2 of 23)	790.0	NM_001302476	18806.0	Mm.260177	NM_008876	ENSMUSG00000020828	Pld2	PLD1C	phospholipase D2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-66861294-3	chr1	66861195	66861395	+	853.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007381, intron 1 of 10)	ORR1D2|LTR|ERVL-MaLR	2014.0	NM_007381	11363.0	Mm.2445	NM_007381	ENSMUSG00000026003	Acadl	AA960361|AU018452|C79855|LCAD	acyl-Coenzyme A dehydrogenase, long-chain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-112466231-3	chr13	112466133	112466333	+	838.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010560, intron 1 of 16)	intron (NM_010560, intron 1 of 16)	2163.0	NM_010560	16195.0	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-19733517-4	chr14	19733377	19733577	+	961.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17780.0	NM_008695	18074.0	Mm.20348	NM_008695	ENSMUSG00000021806	Nid2	AW547149|Ly111|NID-2|entactin-2|nidogen-2	nidogen 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-8969725-4	chr3	8969620	8969820	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	-5574.0	NM_001025261	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	5.59863605719113	5.69251942983936	5.55862834049246	5.75861853412934	5.25099339895521	5.80818228720328	5.07457279433974	5.3949805949684	-0.285643010292709	0.29458311280914	0.798191705447
Merged-chr2-160021775-4	chr2	160021697	160021897	+	945.908325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040499, intron 1 of 3)	intron (NR_040499, intron 1 of 3)	5144.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-74207252-1	chr18	74207152	74207352	+	646.0	f1_balb.idr	intron (NM_001164355, intron 1 of 6)	RMER30|DNA|hAT-Charlie	566.0	NM_001164355	66468.0	Mm.283406	NM_025581	ENSMUSG00000036223	Ska1	2810433K01Rik|AV117428	spindle and kinetochore associated complex subunit 1	protein-coding	-0.618802996698496	-0.607328694272964	-0.611086729728348	-0.613986951272676	-0.618086468559668	0.0317600808888597	-0.610257766076773	-0.17212621731017	3.41989740960314	0.218146092618797	1
Merged-chr9-3029780-4	chr9	3029708	3029908	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GSAT_MM|Satellite|Satellite	8935.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6077211-4	chr19	6077133	6077333	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081041)	promoter-TSS (NM_001081041)	-46.0	NM_001081041	68505.0	Mm.227361	NM_001081041	ENSMUSG00000024799	Vps51	1110014N23Rik|3110057M17Rik|AI837850|Ffr	VPS51 GARP complex subunit	protein-coding	-0.394268771343417	-0.637339041592498	-0.640448874972672	-0.642837887928229	-0.102430145763574	-0.636635974780597	-0.46764826046914	-0.642421185079289	1.51999016357436	0.58004333610162	1
Merged-chr10-4047265-3	chr10	4047166	4047366	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170785, intron 17 of 27)	intron (NM_001170785, intron 17 of 27)	74191.0	NM_172308	270685.0	Mm.184752	NM_172308	ENSMUSG00000040675	Mthfd1l	2410004L15Rik|AI647056|Fthfsdc1	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-62249116-3	chr11	62249011	62249211	+	869.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007413, exon 1 of 2)	exon (NM_007413, exon 1 of 2)	127.0	NM_007413	11541.0	Mm.40740	NM_007413	ENSMUSG00000018500	Adora2b	A2BAR|A2BR|A2b|AA2BR|AI480866|AI605384	adenosine A2b receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-110017781-4	chr2	110017688	110017888	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026613)	promoter-TSS (NM_026613)	-29.0	NM_001355581	68201.0	Mm.181767	NM_026613	ENSMUSG00000027160	Ccdc34	2810027O19Rik|4930522P10Rik|AI596202	coiled-coil domain containing 34	protein-coding	3.78321537384961	3.47580620470073	4.21424782844231	3.91956253275854	4.22788179106403	3.80634762310276	4.9355864979853	4.33064527280669	0.690468953728523	0.128392113688741	0.560434845999582
Merged-chr7-27689387-4	chr7	27689264	27689464	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001112731)	promoter-TSS (NM_001112731)	24.0	NM_001112731	112415.0	Mm.145362	NM_198417	ENSMUSG00000057093	Zfp607b	C030039L03Rik	zinc finger protein 607B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-25197962-4	chr12	25197889	25198089	+	894.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	68815.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	1.90024919483167	1.6732656030449	1.07123338842226	1.91528278755662	1.91667017026804	1.09378825318919	1.63048100938683	1.82344799676452	-0.0904935259989008	0.938575336037402	0.998431161219273
Merged-chr18-40476835-2	chr18	40476735	40476935	+	590.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026135, intron 1 of 1)	URR1A|DNA|hAT-Charlie	218474.0	NM_026135	383348.0	Mm.76366	NM_026135	ENSMUSG00000051401	Kctd16	4930434H12Rik|Gm1267	potassium channel tetramerisation domain containing 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-42924965-4	chr17	42924866	42925066	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48542.0	NM_009847	12488.0	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-45108120-4	chr4	45107982	45108182	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001134646)	promoter-TSS (NM_001134646)	31.0	NM_001134646	68512.0	Mm.282081	NM_001099675	ENSMUSG00000078713	Tomm5	1110019J04Rik|Tom5	translocase of outer mitochondrial membrane 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-139286805-2	chr4	139286705	139286905	+	766.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037761, intron 6 of 9)	intron (NM_001037761, intron 6 of 9)	23903.0	NR_151463	212555.0	Mm.45131	NM_145384	ENSMUSG00000028744	Pqlc2	BC019216	PQ loop repeat containing 2	protein-coding	-0.570176278079204	-0.828172689240768	-0.832418311687752	-0.201448708538692	-0.838185769364555	-0.825368027620195	-0.831734101493321	-0.834392483589968	-3.09671510812096	0.295048739405684	1
Merged-chr4-146168378-2	chr4	146168278	146168478	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177545, intron 2 of 4)	intron (NM_001177545, intron 2 of 4)	10688.0	NM_001177545	667666.0	Mm.459230	NM_001177545	ENSMUSG00000066007	Zfp600	Gm13164	zinc finger protein 600	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-119396418-4	chr6	119396332	119396532	+	992.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197985, intron 1 of 7)	intron (NM_197985, intron 1 of 7)	-7698.0	NM_001355692	68465.0	Mm.291826	NM_197985	ENSMUSG00000030168	Adipor2	1110001I14Rik|ADCR2|AI115388|AW554121|D6Ucla1e|Paqr2	adiponectin receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-18319176-2	chr10	18319076	18319276	+	781.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-84195.0	NM_144820	215814.0	Mm.296565	NM_144820	ENSMUSG00000059554	Ccdc28a	1700009P13Rik|AI480677	coiled-coil domain containing 28A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83703908-4	chr11	83703795	83703995	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081957)	promoter-TSS (NM_001081957)	-161.0	NM_001081957	100034251.0	Mm.24097	NM_001081957	ENSMUSG00000069792	Wfdc17	Amwap|Gm11428	WAP four-disulfide core domain 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81482752-4	chr10	81482589	81482789	+	999.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311124)	promoter-TSS (NM_001311124)	20.0	NM_176954	319586.0	Mm.152689	NM_176954	ENSMUSG00000034818	Celf5	4930565A21Rik|Brunol5	CUGBP, Elav-like family member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-48901057-4	chr11	48900949	48901149	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024230, intron 2 of 4)	intron (NM_001024230, intron 2 of 4)	1103.0	NM_001024230	432555.0	Mm.338931	NM_001024230	ENSMUSG00000058163	Gm5431	EG432555|Irgb9b8	predicted gene 5431	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-3635491-2	chr7	3635391	3635591	+	547.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159714, intron 7 of 13)	MLT1B|LTR|ERVL-MaLR	5506.0	NM_027328	68988.0	Mm.246863	NM_027328	ENSMUSG00000008373	Prpf31	1500019O16Rik|2810404O06Rik|AW554706|PRP31|RP11	pre-mRNA processing factor 31	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-73928184-4	chr17	73928075	73928275	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011723, intron 6 of 35)	B1F1|SINE|Alu	22021.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114760853-2	chr11	114760753	114760953	+	620.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4536.0	NM_001102615	286942.0	Mm.308713	NM_001102615	ENSMUSG00000010021	Kif19a	Kif19	kinesin family member 19A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-3144977-2	chr11	3144894	3145094	+	1000.0	f0_balb.idr|f1_balb.idr	intron (NM_030207, intron 16 of 32)	intron (NM_030207, intron 16 of 32)	20973.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129621343-1	chr2	129621243	129621443	+	761.0	f1_balb.idr	intron (NM_001355158, intron 7 of 8)	intron (NM_001355158, intron 7 of 8)	25881.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46817424-4	chr8	46817307	46817507	+	970.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152560, intron 5 of 7)	intron (NR_152560, intron 5 of 7)	77662.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-52941114-3	chr2	52941031	52941231	+	912.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	83263.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-120648913-5	chr5	120648929	120649129	+	850.1199949999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001281999)	promoter-TSS (NM_001281999)	-159.0	NM_001281999	19415.0	Mm.41209	NM_013832	ENSMUSG00000029602	Rasal1	MRASAL	RAS protein activator like 1 (GAP1 like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105621500-2	chr8	105621400	105621600	+	693.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081241, intron 20 of 21)	intron (NM_001081241, intron 20 of 21)	6034.0	NR_035492	100316712.0		NR_035492	ENSMUSG00000089432	Mir1966	mir-1966|mmu-mir-1966	microRNA 1966	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-37894398-1	chr13	37894298	37894498	+	970.0	f0_balb.idr	non-coding (NR_033615, exon 4 of 10)	non-coding (NR_033615, exon 4 of 10)	5527.0	NM_001177869	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-13985697-2	chr10	13985597	13985797	+	864.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358782, intron 1 of 9)	intron (NM_001358782, intron 1 of 9)	19318.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-154713243-1	chr2	154713143	154713343	+	869.0	f1_c57bl6.idr	Intergenic	(TCCC)n|Simple_repeat|Simple_repeat	56217.0	NM_029362	75608.0	Mm.262480	NM_029362	ENSMUSG00000038467	Chmp4b	2010012F05Rik|C76846|Snf7-2	charged multivesicular body protein 4B	protein-coding	2.18588441064155	2.35131625465378	1.8773457410516	2.82662094147403	2.10774762745369	1.30031714665401	1.51723543033503	2.10364397122426	-1.37943925299564	0.155929038210727	0.611251339725214
Merged-chr3-16086739-4	chr3	16086635	16086835	+	906.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-80403.0	NM_001081687	381484.0	Mm.217376	NM_001081687	ENSMUSG00000078780	Gm5150	-	predicted gene 5150	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-54358959-4	chr3	54358888	54359088	+	954.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2119.0	NM_001198766	50706.0	Mm.236067	NM_015784	ENSMUSG00000027750	Postn	A630052E07Rik|AI747096|OSF-2|Osf2|PLF|PN	periostin, osteoblast specific factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-123374888-3	chr8	123374779	123374979	+	886.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359076, intron 1 of 16)	intron (NM_001359076, intron 1 of 16)	1168.0	NM_001286363	66855.0	Mm.178818	NM_025804	ENSMUSG00000001472	Tcf25	1100001J13Rik|1810041K11Rik|D8Ertd325e|Nulp1|mKIAA1049	transcription factor 25 (basic helix-loop-helix)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-92675878-4	chr16	92675772	92675972	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111022, intron 4 of 6)	intron (NM_001111022, intron 4 of 6)	21457.0	NM_001111023	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	3.49841087383214	4.59271149765281	3.5413017263787	4.33922126803299	3.36818720698209	4.30342500004466	4.16881841928662	4.35961076526272	0.0328863221595295	0.946238744006203	0.998431161219273
Merged-chr2-51089917-4	chr2	51089818	51090018	+	890.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	59193.0	NM_028810	74194.0	Mm.46497	NM_028810	ENSMUSG00000017144	Rnd3	2610017M01Rik|AI661404|Arhe|Rhoe	Rho family GTPase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-140924626-2	chr6	140924526	140924726	+	632.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	297741.0	NM_001309436	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-17131269-1	chr19	17131169	17131369	+	776.5	f0_balb.idr	intron (NM_181348, intron 9 of 19)	intron (NM_181348, intron 9 of 19)	175151.0	NM_181348	353211.0	Mm.257354	NM_181348	ENSMUSG00000039126	Prune2	6330414G02Rik|A230083H22Rik|A330102H22Rik|Bmcc1|mKIAA0367	prune homolog 2	protein-coding	0.991729868325099	0.717874143965162	1.35012566787667	0.695858725557142	1.33818731198437	1.42021651397329	1.57832588085074	0.697555400241974	1.4065099173546	0.344966074546768	0.845797837334461
Merged-chr2-91239126-2	chr2	91239026	91239226	+	568.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_015464)	TTS (NR_015464)	1980.0	NR_015464	606735.0	Mm.246808	NR_015464	ENSMUSG00000097868	A330069E16Rik	-	RIKEN cDNA A330069E16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-23317940-2	chr16	23317840	23318040	+	549.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252505, intron 3 of 7)	intron (NM_001252505, intron 3 of 7)	27470.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-5714613-7	chr2	5714551	5714751	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_177343, exon 1 of 11)	5' UTR (NM_177343, exon 1 of 11)	111.0	NM_001290374	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-144981849-4	chr7	144981711	144981911	+	975.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41886.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	3.24793738221577	3.22168391203988	3.20513991159937	3.41557943570847	3.06307381574166	2.25704255286497	2.37288356767806	3.43233585544437	-0.665957593620237	0.307701523850222	0.808836493842255
Merged-chr15-53204998-2	chr15	53204898	53205098	+	603.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	141185.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-11686125-3	chr16	11686000	11686200	+	729.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028964, intron 18 of 20)	ORR1F|LTR|ERVL-MaLR	-93602.0	NR_126430	73761.0	Mm.39183	NR_126430		4833415N18Rik	-	RIKEN cDNA 4833415N18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-52043421-4	chr11	52043326	52043526	+	935.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166654, intron 13 of 13)	intron (NM_001166654, intron 13 of 13)	39205.0	NM_001166653	213084.0	Mm.280557	NM_153785	ENSMUSG00000020389	Cdkl3	AI852479|B230379H01Rik	cyclin-dependent kinase-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-51521150-2	chr10	51521050	51521250	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30252.0	NM_013532	14728.0	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-27486383-2	chr7	27486283	27486483	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018820)	promoter-TSS (NM_018820)	-570.0	NM_018820	55942.0	Mm.153684	NM_018820	ENSMUSG00000008384	Sertad1	1110032C13Rik|AV000455|AW456625|Sei-1|Sei1|TRIP-Br1	SERTA domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-49488600-2	chr18	49488500	49488700	+	614.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34689.0	NR_033785	67321.0	Mm.245802	NR_033785	ENSMUSG00000100297	1700044K03Rik	-	RIKEN cDNA 1700044K03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-29655347-3	chr11	29655249	29655449	+	641.583313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13D3|LTR|ERVK	-37549.0	NM_194053	68585.0	Mm.192580	NM_024226	ENSMUSG00000020458	Rtn4	1110020G17Rik|AA407876|AA409940|AA960376|ASY|C130026I10Rik|NOGO|NSP-CL|NgA|Nogo-A|Nogo-B|Nogo-C|mKIAA0886|mKIAA4153	reticulon 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-25505307-2	chr9	25505207	25505407	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 2 of 7)	intron (NM_026189, intron 2 of 7)	23710.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-115703414-2	chr8	115703314	115703514	+	572.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001025577, exon 1 of 1)	3' UTR (NM_001025577, exon 1 of 1)	3480.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-88557037-2	chr5	88556937	88557137	+	661.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_023054)	TTS (NM_023054)	2575.0	NM_023054	65961.0	Mm.490364	NM_023054	ENSMUSG00000070697	Utp3	2400011K09Rik|AW557551|C87704|Crl-1|Crl1|Crlz1|Sas10	UTP3 small subunit processome component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126102836-2	chr7	126102736	126102936	+	601.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028816, intron 23 of 23)	intron (NM_028816, intron 23 of 23)	-20425.0	NM_001358885	269994.0	Mm.39599	NM_001101488	ENSMUSG00000046182	Gsg1l	AI852434|C230098I05Rik|G630023A01Rik|Gm637|g1l	GSG1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118500007-2	chr11	118499907	118500107	+	579.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001024931, intron 9 of 14)	MTD|LTR|ERVL-MaLR	23175.0	NM_001359368	217364.0	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135712424-3	chr5	135712314	135712514	+	902.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008898, intron 1 of 15)	MTEb|LTR|ERVL-MaLR	23269.0	NM_008898	18984.0	Mm.3863	NM_008898	ENSMUSG00000005514	Por	4933424M13Rik|CPR|CYPOR|P450R	P450 (cytochrome) oxidoreductase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-77959959-4	chr9	77959859	77960059	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134255, intron 2 of 7)	intron (NM_134255, intron 2 of 7)	42594.0	NM_134255	68801.0	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	3.75220295436993	3.60593144061207	2.89795499129843	2.81332255230592	3.7809865651574	3.46049150425779	3.43405886164323	2.69745559296032	0.103195730407835	0.86415974259035	0.998431161219273
Merged-chr7-127262659-2	chr7	127262559	127262759	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	tRNA-Ala-GCY_|tRNA|tRNA	-1992.0	NM_023203	66422.0	Mm.29898	NM_023203	ENSMUSG00000042462	Dctpp1	2410015N17Rik|AI854235|RS21-C6	dCTP pyrophosphatase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-33101522-4	chr19	33101408	33101608	+	902.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55604.0	NR_039552	100628575.0		NR_039552	ENSMUSG00000106278	Mir3970	mmu-mir-3970|mu-mir-3970	microRNA 3970	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-108923287-4	chr3	108923209	108923409	+	902.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11580.0	NM_001356292	66921.0	Mm.51049	NM_025845	ENSMUSG00000027881	Prpf38b	1110021E09Rik|AU018955	PRP38 pre-mRNA processing factor 38 (yeast) domain containing B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91408104-3	chr16	91407964	91408164	+	830.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008349, intron 2 of 6)	intron (NM_008349, intron 2 of 6)	1829.0	NM_008349	16155.0	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72349239-2	chr6	72349139	72349339	+	545.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_026696, exon 4 of 4)	3' UTR (NM_026696, exon 4 of 4)	1922.0	NM_026696	68364.0	Mm.52711	NM_026696	ENSMUSG00000058706	0610030E20Rik	1500031N04Rik|2810411C16Rik|AI461894	RIKEN cDNA 0610030E20 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-58250832-2	chr9	58250732	58250932	+	651.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1046.0	NM_178087	18854.0	Mm.392123	NM_008884	ENSMUSG00000036986	Pml	1200009E24Rik|AI661194|Trim19	promyelocytic leukemia	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-116608021-2	chr7	116607921	116608121	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	103652.0	NM_001360375	53322.0	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-84666231-4	chr3	84666132	84666332	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177260)	promoter-TSS (NM_177260)	40.0	NM_177260	320782.0	Mm.107370	NM_177260	ENSMUSG00000056498	Tmem154	9930117H01Rik	transmembrane protein 154	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80055725-2	chr10	80055625	80055825	+	939.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037741, intron 4 of 6)	B3|SINE|B2	1706.0	NM_001037741	625249.0	Mm.332810	NM_008162	ENSMUSG00000075706	Gpx4	GPx-4|GSHPx-4|PHGPx|mtPHGPx|snGPx	glutathione peroxidase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-39231026-2	chr15	39230959	39231159	+	727.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001256383, intron 1 of 25)	MERV1_I-int|LTR|ERV1	32773.0	NM_053271	116838.0	Mm.309296	NM_053271	ENSMUSG00000037386	Rims2	2810036I15Rik|AW048769|RIM2|Rab3ip2|Rim2(+40A)|Rim2(+44A)|Rim2(+4A)|Serg2|Syt3-rs|mKIAA0751	regulating synaptic membrane exocytosis 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-7573755-2	chr9	7573655	7573855	+	895.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310717, intron 4 of 9)	intron (NM_001310717, intron 4 of 9)	2359.0	NM_001310717	234911.0	Mm.334940	NM_001030289	ENSMUSG00000070323	Mmp27	Gm180	matrix metallopeptidase 27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33932292-4	chr16	33932146	33932346	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 10 of 14)	intron (NM_001145884, intron 10 of 14)	34792.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-110369839-2	chr11	110369739	110369939	+	727.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29263.0	NM_001356345	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-105431754-4	chr14	105431653	105431853	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045859, intron 1 of 2)	intron (NR_045859, intron 1 of 2)	4194.0	NR_045859	71362.0	Mm.410781	NR_045859	ENSMUSG00000115548	5430440P10Rik	-	RIKEN cDNA 5430440P10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-72779521-4	chr11	72779393	72779593	+	935.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024926, intron 3 of 3)	intron (NM_001024926, intron 3 of 3)	16346.0	NM_001024926	192986.0	Mm.194755	NM_001024926	ENSMUSG00000057778	Cyb5d2	9330151E16Rik|Gm2	cytochrome b5 domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90474207-2	chr2	90474107	90474307	+	667.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 2 of 23)	intron (NM_008982, intron 2 of 23)	4967.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30603204-2	chr2	30603104	30603304	+	797.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030137, intron 1 of 1)	intron (NM_030137, intron 1 of 1)	8160.0	NM_030137	78617.0	Mm.40413	NM_030137	ENSMUSG00000047363	Cstad	9530039B02Rik	CSA-conditional, T cell activation-dependent protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4171963-2	chr19	4171863	4172063	+	876.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_134148, intron 4 of 9)	intron (NM_134148, intron 4 of 9)	3516.0	NM_134148	107239.0	Mm.482310	NM_134148	ENSMUSG00000075289	Carns1	AI790298|Atpgd1|mKIAA1394	carnosine synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85499758-2	chr12	85499658	85499858	+	638.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25868.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-111226645-3	chr10	111226525	111226725	+	832.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175489, intron 3 of 23)	intron (NM_175489, intron 3 of 23)	61823.0	NM_175489	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129183980-4	chr2	129183879	129184079	+	690.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3306.0	NR_045264	100048701.0	Mm.428544	NR_045264	ENSMUSG00000084826	AI847159	-	expressed sequence AI847159	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-32746436-4	chr5	32746342	32746542	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347332)	promoter-TSS (NM_001347332)	-100.0	NM_001347332	320951.0	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-92692325-4	chr16	92692187	92692387	+	874.7333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111022, intron 3 of 6)	intron (NM_001111022, intron 3 of 6)	5042.0	NM_001111023	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-132347161-2	chr1	132347061	132347261	+	556.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	20787.0	NM_001311108	68875.0	Mm.273785	NM_178874	ENSMUSG00000042066	Tmcc2	1110063G11Rik	transmembrane and coiled-coil domains 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-86467174-4	chr9	86467027	86467227	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177208)	promoter-TSS (NM_177208)	-27.0	NM_177208	320615.0	Mm.245500	NM_177208	ENSMUSG00000034973	Dopey1	B130005I07Rik|BC035275|C130028L17|D9Ertd809e	dopey family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-68656551-3	chr7	68656456	68656656	+	620.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	38100.0	NR_003648	384639.0	Mm.261760	NM_001013781		Gm5334	EG384639	tetraspanin 7 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-10704325-3	chr17	10704221	10704421	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027032, intron 2 of 4)	L1MEf|LINE|L1	135870.0	NM_027032	69310.0	Mm.18889	NM_027032	ENSMUSG00000037196	Pacrg	1700008H23Rik	PARK2 co-regulated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-29114095-3	chr17	29113979	29114179	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20310.0	NM_007669	12575.0	Mm.195663	NM_007669	ENSMUSG00000023067	Cdkn1a	CAP20|CDKI|CIP1|Cdkn1|P21|SDI1|Waf1|mda6|p21Cip1|p21WAF	cyclin-dependent kinase inhibitor 1A (P21)	protein-coding	2.39658699299109	1.56476648612732	1.47700981265266	1.4039353114007	4.51501378424505	5.07575120862855	4.82467139025036	5.51628831608532	5.25043082615546	1.09161420554844e-11	2.80654012246505e-09
Merged-chr15-76119352-2	chr15	76119252	76119452	+	854.25	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001142968)	TTS (NM_001142968)	843.0	NM_144848	223650.0	Mm.259929	NM_144848		Eppk1	6230424I18Rik|EPIPL|EPIPL1|EPPK	epiplakin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-55086173-2	chr1	55086073	55086273	+	703.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356512, intron 2 of 11)	B2_Mm1t|SINE|B2	1759.0	NM_010477	15510.0	Mm.1777	NM_010477	ENSMUSG00000025980	Hspd1	60kDa|CPN60|HSP-60|HSP-65|Hsp60	heat shock protein 1 (chaperonin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46882133-1	chr8	46882033	46882233	+	719.0	f0_balb.idr	Intergenic	Intergenic	-104754.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-75739263-2	chr10	75739163	75739363	+	610.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172549, intron 14 of 36)	intron (NM_172549, intron 14 of 36)	25094.0	NM_172549	104248.0	Mm.257404	NM_172549	ENSMUSG00000020196	Cabin1	A330070M20Rik|Cain|Ppp3in	calcineurin binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111878387-4	chr12	111878288	111878488	+	862.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011625, intron 1 of 16)	intron (NM_011625, intron 1 of 16)	29667.0	NM_011625	21981.0	Mm.313076	NM_011625	ENSMUSG00000021285	Ppp1r13b	AI449786|ASPP1|AW545810|Tp53bp2|Trp53bp2|p85	protein phosphatase 1, regulatory (inhibitor) subunit 13B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118862638-2	chr9	118862538	118862738	+	768.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 9 of 13)	intron (NM_001113514, intron 9 of 13)	-63898.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-43561390-4	chr2	43561296	43561496	+	958.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289593, intron 1 of 12)	intron (NM_001289593, intron 1 of 12)	6071.0	NM_027552	70789.0	Mm.105278	NM_027552	ENSMUSG00000026866	Kynu	4432411A05Rik	kynureninase (L-kynurenine hydrolase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6334916-4	chr19	6334815	6335015	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001168488)	promoter-TSS (NM_001168488)	-64.0	NM_001168488	17283.0	Mm.12917	NM_008583	ENSMUSG00000024947	Men1	AW045611	multiple endocrine neoplasia 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166666818-2	chr2	166666718	166666918	+	641.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	47014.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-66437026-4	chr8	66436934	66437134	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175188, intron 6 of 7)	intron (NM_175188, intron 6 of 7)	49496.0	NM_025465	66282.0	Mm.294985	NM_025465	ENSMUSG00000025591	Tma16	1810029B16Rik	translation machinery associated 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-34471962-4	chr19	34471838	34472038	+	991.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3197.0	NM_009890	12642.0	Mm.30824	NM_009890	ENSMUSG00000050370	Ch25h	AI462618|m25OH	cholesterol 25-hydroxylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-114104867-2	chr7	114104767	114104967	+	621.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025846, intron 1 of 5)	intron (NM_025846, intron 1 of 5)	12914.0	NM_025846	66922.0	Mm.276572	NM_025846	ENSMUSG00000055723	Rras2	2610016H24Rik|C86394|TC21	related RAS viral (r-ras) oncogene 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-120564655-6	chr9	120564553	120564753	+	904.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178676, intron 10 of 10)	B4|SINE|B4	-6864.0	NM_025974	67115.0	Mm.289810	NM_025974	ENSMUSG00000025794	Rpl14	3100001N19Rik|AA407502|AL022816|CAG-ISL-7|CTG-B33|L14	ribosomal protein L14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31424127-2	chr14	31424027	31424227	+	907.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_011894, intron 2 of 8)	MTD|LTR|ERVL-MaLR	-6450.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-34277883-4	chr13	34277812	34278012	+	893.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033167, intron 3 of 10)	intron (NM_001033167, intron 3 of 10)	67270.0	NM_001033167	73102.0	Mm.23932	NM_001033167	ENSMUSG00000038267	Slc22a23	3110004L20Rik	solute carrier family 22, member 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-73320789-4	chr15	73320684	73320884	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001358045, exon 8 of 34)	exon (NM_001358045, exon 8 of 34)	-65902.0	NR_029561	387169.0		NR_029561	ENSMUSG00000065612	Mir151	Mirn151|mir-151|mmu-mir-151	microRNA 151	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-124706279-2	chr2	124706179	124706379	+	884.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52698.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-3475105-3	chr6	3475020	3475220	+	734.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178899, intron 4 of 9)	intron (NM_178899, intron 4 of 9)	19378.0	NM_178899	101202.0	Mm.206911	NM_178899	ENSMUSG00000044156	Hepacam2	AI987662	HEPACAM family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35810237-2	chr17	35810137	35810337	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11476.0	NM_133662	15937.0	Mm.25613	NM_133662	ENSMUSG00000003541	Ier3	AI663993|IEX-1|cI-3|gly96	immediate early response 3	protein-coding	-0.752703249331578	-1.19327662759868	-1.20367200772054	-1.21221108246634	-1.07350664517746	-1.1910239053609	-1.2013187215212	-1.21068259216948	-1.39419391438984	0.678133685438574	1
Merged-chr18-3010342-1	chr18	3010242	3010442	+	812.0	f0_balb.idr	Intergenic	Intergenic	113070.0	NM_001167539	100312476.0	Mm.480293	NM_001167539	ENSMUSG00000091539	Vmn1r238	-	vomeronasal 1 receptor, 238	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-50739412-4	chr9	50739318	50739518	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_025865)	TTS (NM_025865)	-1683.0	NM_001311069	330938.0	Mm.82598	NM_178118	ENSMUSG00000032064	Dixdc1	4930563F16Rik|BC048182|Ccd1|Ccd1Aalpha1L|Ccd1Abeta1L|Ccd1BalphaL|Ccd1BbetaL|Ccd1CL|mKIAA1735	DIX domain containing 1	protein-coding	5.78129590188659	5.84184107252249	5.43189671183495	5.59456922334364	5.87092253058558	5.28653400519787	5.71588066622437	5.71185467578471	-0.00174060645591925	0.994657725052416	0.998431161219273
Merged-chr16-87698918-4	chr16	87698817	87699017	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007520)	promoter-TSS (NM_007520)	-37.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-176816970-4	chr1	176816870	176817070	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357390, intron 1 of 18)	MLTR11B|LTR|ERVK	2310.0	NM_029756	76816.0	Mm.171399	NM_029756	ENSMUSG00000026504	Sdccag8	2700048G21Rik|5730470G24Rik|Cccap	serologically defined colon cancer antigen 8	protein-coding	5.08204863754455	4.72709839353397	3.53800485293768	4.83200092505956	4.78037079364875	4.80673918704329	4.87515021108479	3.54774868630396	-0.0827713361893951	0.853240975383501	0.998431161219273
Merged-chr10-88714969-4	chr10	88714864	88715064	+	985.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16137.0	NM_001037166	237433.0	Mm.478763	NM_001037166		Gm4925	EG237433	predicted gene 4925	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-9645475-4	chr4	9645301	9645501	+	943.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290367, intron 1 of 22)	MTC|LTR|ERVL-MaLR	-1684.0	NM_001177852	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-123941553-4	chr9	123941463	123941663	+	994.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27129.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-8886141-4	chr10	8886083	8886283	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175155)	promoter-TSS (NM_175155)	-113.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	4.32428702631151	3.78373991287131	4.72733518462537	4.31365039843949	4.23149599393049	3.50942103743029	3.92572966535002	4.00763440733611	-0.509961947789712	0.248820623833357	0.74758343357745
Merged-chr18-4267062-2	chr18	4266962	4267162	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	85891.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-47673612-4	chr8	47673526	47673726	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023503, intron 1 of 1)	intron (NM_023503, intron 1 of 1)	1533.0	NM_023503	69260.0	Mm.430733	NM_023503	ENSMUSG00000063049	Ing2	2810011M06Rik|Ing1l|Ing2b|P33ING2	inhibitor of growth family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118349080-4	chr11	118348985	118349185	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011594, intron 1 of 4)	intron (NM_011594, intron 1 of 4)	6326.0	NM_011594	21858.0	Mm.206505	NM_011594	ENSMUSG00000017466	Timp2	D11Bwg1104e|Timp-2	tissue inhibitor of metalloproteinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-79546146-4	chr15	79546072	79546272	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040187, intron 1 of 12)	CpG	387.0	NM_199079	67040.0	Mm.29644	NM_152806	ENSMUSG00000055065	Ddx17	2610007K22Rik|A430025E01Rik|AI047725|C80929|Gm926|p72	DEAD (Asp-Glu-Ala-Asp) box polypeptide 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-65216827-2	chr17	65216727	65216927	+	845.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	293230.0	NM_001360185	381107.0	Mm.141275	NM_001008973	ENSMUSG00000045036	Tmem232	E130009J12Rik|Gm940|Tes13-L|Tes13-S	transmembrane protein 232	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70445645-4	chr11	70445540	70445740	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6291.0	NM_025397	66172.0	Mm.46424	NM_025397	ENSMUSG00000018923	Med11	1110030J09Rik|AI465144|AW545069	mediator complex subunit 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-113222226-4	chr12	113222153	113222353	+	995.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36350.0	NM_153776	69195.0	Mm.313244	NM_153776	ENSMUSG00000049036	Tmem121	2410008J05Rik|Hole	transmembrane protein 121	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-115469481-1	chr9	115469381	115469581	+	662.0	f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	87662.0	NR_130329	100316675.0		NR_130329	ENSMUSG00000080409	Mir467h	Mirn467h|mmu-mir-467h	microRNA 467h	ncRNA	3.24766694546707	3.00434818800937	3.08677054946957	2.35665305982613	3.02439605879009	2.91955370975295	2.28277807826561	2.36868275695779	-0.516499677325926	0.465246651875983	0.922736970596151
Merged-chr9-21149242-2	chr9	21149142	21149342	+	583.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016742, intron 1 of 7)	RSINE1|SINE|B4	664.0	NM_016742	12539.0	Mm.32331	NM_016742	ENSMUSG00000019471	Cdc37	p50|p50Cdc37	cell division cycle 37	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-19014637-2	chr17	19014537	19014737	+	570.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	-38856.0	NM_001104550	224552.0	Mm.469860	NM_001104550	ENSMUSG00000096717	Vmn2r98	EG224552	vomeronasal 2, receptor 98	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-61224466-4	chr18	61224375	61224575	+	977.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146086, intron 1 of 21)	intron (NM_146086, intron 1 of 21)	3976.0	NM_146086	225600.0	Mm.391106	NM_146086	ENSMUSG00000024575	Pde6a	Pdea|nmf282	phosphodiesterase 6A, cGMP-specific, rod, alpha	protein-coding	1.63192388124699	1.59866423383331	2.38680812508864	2.32053130895216	2.22217194721566	2.13383720119379	2.06570781189507	2.23413742868137	0.31018663840058	0.735302088036166	0.998431161219273
Merged-chr7-24901384-3	chr7	24901269	24901469	+	632.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007655, intron 4 of 4)	intron (NM_007655, intron 4 of 4)	-1617.0	NM_001130150	16801.0	Mm.3181	NM_008488	ENSMUSG00000040940	Arhgef1	Lbcl2|Lsc	Rho guanine nucleotide exchange factor (GEF) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-9813105-3	chr1	9813002	9813202	+	894.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177547, intron 1 of 16)	RSINE1|SINE|B4	14972.0	NM_177547	170755.0	Mm.336410	NM_133220	ENSMUSG00000025915	Sgk3	2510015P22Rik|A330005P07Rik|Cisk|fy|fz	serum/glucocorticoid regulated kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-60177701-3	chr13	60177607	60177807	+	828.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008086)	promoter-TSS (NM_008086)	-172.0	NM_008086	14451.0	Mm.22701	NM_008086	ENSMUSG00000052957	Gas1	AW554192|Gas-1	growth arrest specific 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-108168124-3	chr6	108168027	108168227	+	962.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145937, intron 3 of 8)	ORR1E|LTR|ERVL-MaLR	17456.0	NM_145937	58911.0	Mm.439876	NM_145937	ENSMUSG00000030101	Sumf1	AA543204|AI463102|AI851573|FGE	sulfatase modifying factor 1	protein-coding	0.75747510943057	0.812381891804895	1.0258702662333	2.0252320893217	1.59936593860146	1.06773362460355	1.03351723605322	1.9624887151821	0.59594562540602	0.664180380590519	0.991874608829023
Merged-chr5-101843999-2	chr5	101843899	101844099	+	803.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 66 of 66)	intron (NM_172882, intron 66 of 66)	78869.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	0.486661840508062	0.226673401568741	0.695950184607062	0.38763974724644	0.206223223010757	0.228271612909955	1.11523156008402	0.390864399316629	0.56988012552929	0.756030986343382	1
Merged-chr8-30840286-1	chr8	30840186	30840386	+	568.0	f0_c57.idr	Intergenic	Intergenic	-249241.0	NM_025869	66959.0	Mm.23916	NM_025869	ENSMUSG00000039661	Dusp26	2310043K02Rik|Skrp3	dual specificity phosphatase 26 (putative)	protein-coding	0.95660734536745	0.0094096013039221	0.194974144166591	-0.00213304973315212	0.604680002844229	0.0108692666474939	0.00434685203252944	-0.00125026221002233	-1.10566839919845	0.61605856822968	1
Merged-chr18-76241864-4	chr18	76241774	76241974	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010754, exon 1 of 11)	5' UTR (NM_010754, exon 1 of 11)	173.0	NM_010754	17126.0	Mm.152699	NM_010754	ENSMUSG00000024563	Smad2	7120426M23Rik|Madh2|Madr2|Smad-2|mMad2	SMAD family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-10946204-4	chr8	10946063	10946263	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17706.0	NR_135302	665306.0	Mm.358758	NR_030715	ENSMUSG00000038917	3930402G23Rik	-	RIKEN cDNA 3930402G23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-32863616-4	chr5	32863493	32863693	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001170567)	promoter-TSS (NM_001170567)	-128.0	NM_177786	277854.0	Mm.101524	NM_177786	ENSMUSG00000037426	Depdc5	AV016528	DEP domain containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-84089744-4	chr17	84089571	84089771	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045458, intron 5 of 5)	intron (NR_045458, intron 5 of 5)	11011.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-17803071-5	chr16	17803039	17803239	+	902.8666380000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_153790, exon 4 of 11)	exon (NM_153790, exon 4 of 11)	5857.0	NM_153790	224024.0	Mm.194950	NM_153790	ENSMUSG00000012017	Scarf2	NSR1|SREC-II|SRECRP-1|Scatf1|Srec2|SrecII	scavenger receptor class F, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27667990-4	chr2	27667874	27668074	+	935.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9227.0	NM_011305	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-25958868-4	chr16	25958772	25958972	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	146912.0	NM_173379	210530.0	Mm.326869	NM_173379	ENSMUSG00000038168	P3h2	4832416N06|AW553532|Leprel1|Mlat4	prolyl 3-hydroxylase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-50856486-3	chr9	50856417	50856617	+	733.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001034085)	promoter-TSS (NM_001034085)	-407.0	NM_001034085	73699.0	Mm.7726	NM_028614	ENSMUSG00000032058	Ppp2r1b	2410091N08Rik|AI790395	protein phosphatase 2, regulatory subunit A, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75913408-2	chr11	75913308	75913508	+	622.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291159, intron 1 of 4)	intron (NM_001291159, intron 1 of 4)	-2349.0	NM_029548	380714.0	Mm.425697	NM_029548	ENSMUSG00000020847	Rph3al	Gm1753|Noc2	rabphilin 3A-like (without C2 domains)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-144294203-3	chr1	144294084	144294284	+	864.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45080.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-45814648-1	chr17	45814548	45814748	+	561.0	f1_c57bl6.idr	Intergenic	Intergenic	66804.0	NR_152136	75154.0	Mm.399341	NR_152136		4930542M03Rik	-	RIKEN cDNA 4930542M03 gene	ncRNA	0.150248111143947	-0.194651453598728	-0.198920786489709	0.401583130022213	0.158435875354338	-0.193687027234068	-0.197980431776952	-0.201631527478117	-1.48656195400035	0.539878738042812	1
Merged-chr6-24645524-4	chr6	24645428	24645628	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028459, intron 1 of 10)	intron (NM_028459, intron 1 of 10)	19467.0	NM_001167745	73178.0	Mm.1574	NM_028459	ENSMUSG00000029684	Wasl	2900021I12Rik|3110031I02Rik|N-WASP	Wiskott-Aldrich syndrome-like (human)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-38214352-1	chr7	38214252	38214452	+	578.0	f1_balb.idr	Intergenic	Intergenic	13642.0	NM_024413	72287.0	Mm.333798	NM_024413	ENSMUSG00000074170	Plekhf1	1810013P09Rik|APPD|LAPF|PHAFIN1|ZFYVE15	pleckstrin homology domain containing, family F (with FYVE domain) member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-67463824-4	chr3	67463712	67463912	+	996.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016753)	promoter-TSS (NM_016753)	95.0	NM_016753	17035.0	Mm.2632	NM_016753	ENSMUSG00000047557	Lxn	-	latexin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72615374-4	chr6	72615346	72615546	+	960.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009443, intron 2 of 3)	intron (NM_009443, intron 2 of 3)	1302.0	NM_009444	22135.0	Mm.246563	NM_009444		Tgoln2	TGN38B|TGN41|TGN46|Ttgn2	trans-golgi network protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28314387-1	chr7	28314287	28314487	+	601.0	f1_balb.idr	TTS (NM_013676)	TTS (NM_013676)	-2341.0	NM_025616	66525.0	Mm.167913	NM_025616	ENSMUSG00000003438	Timm50	2810403L02Rik|AU015082|TIM50L	translocase of inner mitochondrial membrane 50	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-54718980-4	chr6	54718878	54719078	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37354.0	NM_001289740	68235.0	Mm.233860	NM_026629	ENSMUSG00000038065	Mturn	2410066E13Rik|AI448550|B230212L03Rik	maturin, neural progenitor differentiation regulator homolog (Xenopus)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-27691649-4	chr3	27691558	27691758	+	972.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356953, intron 1 of 26)	intron (NM_001356953, intron 1 of 26)	18794.0	NM_001356953	72007.0	Mm.38832	NM_173182	ENSMUSG00000039286	Fndc3b	1600019O04Rik|AW550168|Fad104|mKIAA4164	fibronectin type III domain containing 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-40710222-3	chr9	40710184	40710384	+	977.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133733, intron 1 of 6)	B3A|SINE|B2	24320.0	NM_133733	71566.0	Mm.280560	NM_133733	ENSMUSG00000032024	Clmp	9030425E11Rik|ACAM|ASP5|AW557819	CXADR-like membrane protein	protein-coding	2.21897511327313	1.87637099428921	1.48565760127354	2.80600286903177	4.57710658750823	3.93210658830464	3.04575585453833	4.34689323903485	3.08518688467242	1.11545009656948e-05	0.000509511558070076
Merged-chr6-127035007-1	chr6	127034907	127035107	+	704.5	f0_balb.idr	Intergenic	Intergenic	19465.0	NM_010204	14177.0	Mm.3403	NM_010204	ENSMUSG00000000183	Fgf6	Fgf-6|HSTF-2	fibroblast growth factor 6	protein-coding	2.18168922573116	2.0414210672101	4.25932065335014	2.930569742861	3.67531268617075	4.37677404044693	4.33538565471539	3.26710024255039	1.16745744824697	0.085089464911698	0.448020902351155
Merged-chr19-11330436-2	chr19	11330336	11330536	+	909.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027836, intron 2 of 6)	intron (NM_027836, intron 2 of 6)	4259.0	NM_001276398	109225.0	Mm.491251	NM_027836	ENSMUSG00000024672	Ms4a7	9130422I10Rik|A430103C15Rik|CD20l4|CFFMA	membrane-spanning 4-domains, subfamily A, member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120324804-4	chr8	120324740	120324940	+	970.7333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-96610.0	NR_110496	434353.0	Mm.411793	NR_110496	ENSMUSG00000097960	A330074K22Rik	-	RIKEN cDNA A330074K22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-15029226-3	chr9	15029141	15029341	+	695.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019482, intron 1 of 4)	intron (NM_019482, intron 1 of 4)	16237.0	NM_019482	55991.0	Mm.142253	NM_019482	ENSMUSG00000031934	Panx1	AI847747	pannexin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-89382115-2	chr7	89382015	89382215	+	647.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360746, intron 1 of 14)	intron (NM_001360746, intron 1 of 14)	22107.0	NM_001360746	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70872093-2	chr8	70871993	70872193	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026964, intron 1 of 4)	intron (NM_026964, intron 1 of 4)	1397.0	NM_026964	234388.0	Mm.295791	NM_026964	ENSMUSG00000007721	Ccdc124	1810023B24Rik	coiled-coil domain containing 124	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-34725334-4	chr12	34725267	34725467	+	889.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271386, intron 3 of 27)	L2|LINE|L2	191728.0	NM_001271386	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107604180-3	chr9	107604024	107604224	+	670.666687	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_111986, exon 3 of 18)	non-coding (NR_111986, exon 3 of 18)	1278.0	NM_009153	20347.0	Mm.4083	NM_009153	ENSMUSG00000057969	Sema3b	SemA|Semaa|sema5|semaV	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B	protein-coding	-0.972132409480291	-0.956475468281651	-0.966832650959455	-0.555444602840396	-0.971642354041016	-0.771248855457823	-0.79020671689705	-0.968481818386545	-0.385036105679377	0.896805100187384	1
Merged-chr17-15827262-2	chr17	15827162	15827362	+	745.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178615)	promoter-TSS (NM_178615)	-676.0	NM_178615	68799.0	Mm.293466	NM_178615	ENSMUSG00000048027	Rgmb	1110059F19Rik|DRAGON	repulsive guidance molecule family member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135537486-4	chr5	135537389	135537589	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146001, intron 1 of 30)	intron (NM_146001, intron 1 of 30)	7633.0	NM_146001	215114.0	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-67331304-4	chr13	67331201	67331401	+	976.216675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177622, intron 1 of 4)	ID_B1|SINE|B4	1259.0	NM_177622	218314.0	Mm.289695	NM_177622	ENSMUSG00000057842	Zfp595	A230042K10Rik|Rslcan23	zinc finger protein 595	protein-coding	-0.374161058274869	-0.486299440835025	-0.337889815687399	-0.351522912728394	-0.263037961319481	-0.316229555930568	-0.488414047019785	-0.349141226130231	0.444296705581109	0.841519512596152	1
Merged-chr2-38797287-4	chr2	38797196	38797396	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010264, intron 3 of 10)	intron (NM_010264, intron 3 of 10)	-12781.0	NM_001159549	14536.0	Mm.439703	NM_010264	ENSMUSG00000063972	Nr6a1	1700113M01Rik|Gcnf|NCNF|RTR	nuclear receptor subfamily 6, group A, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-153333080-2	chr1	153332980	153333180	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010683)	promoter-TSS (NM_010683)	-294.0	NM_010683	226519.0	Mm.1249	NM_010683	ENSMUSG00000026478	Lamc1	Lamb2	laminin, gamma 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3299190-2	chr12	3299090	3299290	+	775.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016676, intron 1 of 5)	B3|SINE|B2	10779.0	NM_016676	19325.0	Mm.378993	NM_016676	ENSMUSG00000020671	Rab10	AW107754	RAB10, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-74957086-4	chr15	74956940	74957140	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008529, intron 1 of 3)	intron (NM_008529, intron 1 of 3)	1934.0	NM_001164040	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	4.29327886016319	4.72395451263875	4.57985520569073	4.09666296374617	5.17976151565034	3.85909827266486	4.1807922746867	3.6070663553842	-0.0895619046180516	0.846254969885969	0.998431161219273
Merged-chr13-14613130-4	chr13	14613032	14613232	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029271)	promoter-TSS (NM_029271)	-95.0	NM_029271	75398.0	Mm.36511	NM_029271	ENSMUSG00000015672	Mrpl32	0610033O15Rik	mitochondrial ribosomal protein L32	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-24454464-4	chr5	24454370	24454570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359881, intron 1 of 15)	intron (NM_001359881, intron 1 of 15)	2293.0	NM_139153	213990.0	Mm.250703	NM_139153	ENSMUSG00000023353	Agap3	AGAP-3|AV028425|Centg3|Crag|Crag.|MRIP-1|cnt-g3	ArfGAP with GTPase domain, ankyrin repeat and PH domain 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-18617838-4	chr16	18617742	18617942	+	891.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4561.0	NM_001001999	14724.0	Mm.475622	NM_010327	ENSMUSG00000050761	Gp1bb	-	glycoprotein Ib, beta polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-59964935-5	chr10	59964760	59964960	+	994.371399	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13090.0	NM_029083	74747.0	Mm.21697	NM_029083	ENSMUSG00000020108	Ddit4	5830413E08Rik|AA415483|REDD1|Rtp801|dig2	DNA-damage-inducible transcript 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-125560476-4	chr1	125560371	125560571	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356294)	promoter-TSS (NM_001356294)	-124.0	NM_001356294	74150.0	Mm.28654	NM_028787	ENSMUSG00000026342	Slc35f5	1300003P13Rik|AI646727	solute carrier family 35, member F5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-110604773-4	chr8	110604669	110604869	+	911.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172916, intron 85 of 86)	intron (NM_172916, intron 85 of 86)	-13798.0	NR_151674	234729.0	Mm.274894	NM_146216	ENSMUSG00000010936	Vac14	AA959718|BC032215|D8Wsu151e|Tax1bp2|Trx|ingls	Vac14 homolog (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-64018072-5	chr9	64017928	64018128	+	673.200012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008542, intron 1 of 3)	(TCTG)n|Simple_repeat|Simple_repeat	4031.0	NM_008542	17130.0	Mm.325757	NM_008542	ENSMUSG00000036867	Smad6	Madh6|b2b390Clo	SMAD family member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46658391-2	chr19	46658291	46658491	+	662.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14609.0	NM_007809	13074.0	Mm.1262	NM_007809	ENSMUSG00000003555	Cyp17a1	Cyp17|p450c17	cytochrome P450, family 17, subfamily a, polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140225312-3	chr5	140225214	140225414	+	846.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152617, intron 10 of 16)	intron (NR_152617, intron 10 of 16)	-50396.0	NM_001359027	17120.0	Mm.27250	NM_010752	ENSMUSG00000029554	Mad1l1	AI173502|AW550425|Mad1	MAD1 mitotic arrest deficient 1-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-9430133-3	chr13	9430010	9430210	+	723.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081426, intron 1 of 36)	intron (NM_001081426, intron 1 of 36)	153585.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-34017069-2	chr10	34016969	34017169	+	658.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025614, intron 1 of 6)	intron (NM_025614, intron 1 of 6)	2547.0	NM_025614	66521.0	Mm.28528	NM_025614	ENSMUSG00000019782	Rwdd1	0710001K08Rik|2610002D06Rik|2700069A07Rik|IH1	RWD domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70506618-4	chr11	70506522	70506722	+	953.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029360, intron 1 of 4)	intron (NM_029360, intron 1 of 4)	1348.0	NM_029360	75604.0	Mm.24400	NM_029360	ENSMUSG00000018919	Tm4sf5	2010003F10Rik|AI323987	transmembrane 4 superfamily member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64612237-3	chr5	64612102	64612302	+	774.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1503.0	NR_045078	100042198.0	Mm.25191	NR_045078	ENSMUSG00000105402	Gm3716	Gm1683	predicted gene 3716	ncRNA	0.90809774446478	1.50614129134261	0.976613200033302	0.95135204814169	1.61582199806633	1.95047151991838	0.983736249896798	0.746458327689336	1.16402667233897	0.385206655450463	0.876154616828737
Merged-chr5-66129002-3	chr5	66128913	66129113	+	773.8555299999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127382, intron 2 of 7)	Lx9|LINE|L1	21965.0	NM_001291226	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	3.50673481762563	4.46286828965905	3.09048771333026	4.03520381027839	3.32331762996693	3.09996928693467	3.42940251732252	3.32268414037007	-0.857204618798093	0.119499674299857	0.541957366772367
Merged-chr7-34918645-4	chr7	34918538	34918738	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008820, intron 1 of 14)	intron (NM_008820, intron 1 of 14)	6231.0	NM_008820	18624.0	Mm.69751	NM_008820	ENSMUSG00000063931	Pepd	Pep-4|Pep4|dal	peptidase D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-144126182-4	chr5	144126087	144126287	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081109, intron 1 of 13)	intron (NM_001081109, intron 1 of 13)	25751.0	NM_001081109	231876.0	Mm.288726	NM_001081109	ENSMUSG00000038970	Lmtk2	2900041G10Rik|A330101P12Rik|BREK|KPI-2|KPI2|aatyk2|cprk	lemur tyrosine kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-40762478-4	chr9	40762340	40762540	+	964.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133733, intron 2 of 6)	B1_Mus1|SINE|Alu	-38833.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	4.32277158036351	3.10508043290547	3.67823744955819	3.73648263824225	5.02967161725271	4.99668735888045	4.88864817693057	4.27286241885312	1.3332282120069	0.00210620046103572	0.0347754951351008
Merged-chr8-83747063-3	chr8	83746902	83747102	+	806.533325	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5691.0	NM_001163031	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	0.930707346600623	1.00972927265338	1.61619310342922	2.14577825559463	0.935950490078967	2.49832520736603	2.03205032430436	1.84749940933448	1.11281406103862	0.37841448144694	0.871397690824179
Merged-chr8-122835177-3	chr8	122835065	122835265	+	847.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13209.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-55986720-4	chr7	55986640	55986840	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153578, intron 3 of 4)	intron (NM_153578, intron 3 of 4)	24209.0	NR_015495	320845.0	Mm.274484	NM_001033396		A230056P14Rik	-	RIKEN cDNA A230056P14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-25426727-4	chr10	25426629	25426829	+	980.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013511, intron 1 of 19)	intron (NM_013511, intron 1 of 19)	18361.0	NM_013511	13822.0	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-66659125-2	chr7	66659025	66659225	+	608.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_080443, intron 5 of 5)	intron (NM_080443, intron 5 of 5)	30436.0	NM_080443	117589.0	Mm.34785	NM_080443	ENSMUSG00000030509	Asb7	AI449039|Asb-7|D030055C23Rik	ankyrin repeat and SOCS box-containing 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-76479312-4	chr11	76479180	76479380	+	996.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346670, intron 2 of 21)	intron (NM_001346670, intron 2 of 21)	-10815.0	NM_001291186	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	2.53470955664073	3.70205099114754	3.90545696867231	3.80239838878619	2.90889350582912	2.73558365080486	3.87547465896901	3.25702913644269	-0.480324500336659	0.435736429338214	0.907834077091723
Merged-chr3-61362346-2	chr3	61362246	61362446	+	639.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2161.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27173866-4	chr17	27173757	27173957	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6093.0	NM_173027	271424.0	Mm.209679	NM_173027	ENSMUSG00000024210	Ip6k3	D830007E07Rik|Ihpk3	inositol hexaphosphate kinase 3	protein-coding	2.67473839693439	1.8710131381037	3.5966927133541	3.24656182403133	2.87917883441296	1.88536859864163	3.62353599880094	2.48762671606878	-0.210234872353638	0.790547580002345	0.998431161219273
Merged-chr5-130248075-4	chr5	130247970	130248170	+	960.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023248, intron 4 of 4)	intron (NM_023248, intron 4 of 4)	7460.0	NM_023248	66711.0	Mm.280484	NM_023248	ENSMUSG00000025337	Sbds	4733401P19Rik|AI836084|CGI-97|SDS	SBDS ribosome maturation factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-94438841-2	chr2	94438741	94438941	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001349003)	promoter-TSS (NM_001349003)	-655.0	NM_001349003	11800.0	Mm.181824	NM_007466	ENSMUSG00000027193	Api5	AAC-11|AI196452|API-5	apoptosis inhibitor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-50237569-2	chr11	50237469	50237669	+	983.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001313968, intron 1 of 4)	intron (NM_001313968, intron 1 of 4)	963.0	NM_001313968	17001.0	Mm.245151	NM_008521	ENSMUSG00000020377	Ltc4s	-	leukotriene C4 synthase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-31500890-2	chr6	31500790	31500990	+	610.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013791, intron 17 of 17)	L1MA4|LINE|L1	63047.0	NM_013723	27205.0	Mm.89918	NM_013723	ENSMUSG00000025608	Podxl	AW121214|Ly102|PC|PCLP-1|Pclp1|Podxl1	podocalyxin-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-67988870-3	chr18	67988775	67988975	+	842.5166630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172631, intron 1 of 5)	intron (NM_172631, intron 1 of 5)	55702.0	NM_172631	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-133092471-4	chr3	133092378	133092578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026231)	promoter-TSS (NM_026231)	-439.0	NM_001356309	67553.0	Mm.304899	NM_026231	ENSMUSG00000028018	Gstcd	4933434L15Rik	glutathione S-transferase, C-terminal domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-114927955-2	chr5	114927854	114928054	+	885.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359946, intron 1 of 4)	intron (NM_001359946, intron 1 of 4)	4714.0	NM_001359945	231655.0	Mm.95479	NM_145209	ENSMUSG00000041827	Oasl1	7530414C13Rik|oasl9	2'-5' oligoadenylate synthetase-like 1	protein-coding	2.77661373447372	3.01506721982537	3.45550559784708	3.36022990799876	1.50090664799074	3.43845230537881	3.68375737165562	3.04731250720727	-0.0611237366043039	0.933412667477307	0.998431161219273
Merged-chr2-103583475-4	chr2	103583366	103583566	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178890, intron 1 of 16)	intron (NM_178890, intron 1 of 16)	17156.0	NM_178890	99382.0	Mm.35850	NM_178890	ENSMUSG00000032724	Abtb2	AW539457|BPOZ-2	ankyrin repeat and BTB (POZ) domain containing 2	protein-coding	3.21323164432478	4.73035507757056	3.73477466681239	2.99065001022271	4.07189330398526	3.96209348812971	3.11120987011346	2.5893895363917	-0.396791467135543	0.523572713223789	0.948197779519432
Merged-chr2-14333799-2	chr2	14333699	14333899	+	636.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54599.0	NM_001012305	277468.0	Mm.44662	NM_001012305	ENSMUSG00000036949	Slc39a12	AW046938|Gm731	solute carrier family 39 (zinc transporter), member 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-42091773-1	chr19	42091673	42091873	+	594.0	f1_c57bl6.idr	intron (NM_145501, intron 1 of 8)	intron (NM_145501, intron 1 of 8)	1338.0	NM_145501	84095.0	Mm.117037	NM_145501	ENSMUSG00000025178	Pi4k2a	Pi4k2	phosphatidylinositol 4-kinase type 2 alpha	protein-coding	-0.290792822991201	-0.274028028484528	-0.27948617478866	-0.283719770910831	0.234399717246101	-0.272802118054215	-0.278279547610063	0.66221457699774	3.93139925746095	0.110955754688977	1
Merged-chr12-111148891-2	chr12	111148791	111148991	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17479.0	NM_001286122	22031.0	Mm.27431	NM_011632	ENSMUSG00000021277	Traf3	AI528849|CAP-1|CD40bp|CRAF1|LAP1|T-BAM|amn	TNF receptor-associated factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-85000282-2	chr16	85000146	85000346	+	569.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001198825, intron 12 of 15)	intron (NM_001198825, intron 12 of 15)	28035.0	NR_045889	100038614.0	Mm.441351	NR_045889	ENSMUSG00000115518	Gm10791	-	predicted gene 10791	ncRNA	-0.115773127980481	-0.0924819881533998	0.960637377708984	-0.105876847081596	-0.114289157853863	-0.090800650878906	0.693170429890645	-0.104846055246222	-0.641405528860902	0.784829233107847	1
Merged-chr5-108433035-2	chr5	108432935	108433135	+	749.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_007507)	TTS (NM_007507)	1364.0	NR_154996	11958.0	Mm.136093	NM_007507	ENSMUSG00000050856	Atp5k	2610008D24Rik|Atp5i|Lfm1	ATP synthase, H+ transporting, mitochondrial F1F0 complex, subunit E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-84391096-3	chr17	84391006	84391206	+	617.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183021, intron 25 of 37)	ORR1E|LTR|ERVL-MaLR	75102.0	NM_183021	240174.0	Mm.246767	NM_177826	ENSMUSG00000024251	Thada	6530405K19|A930021O22|AU019899|BC052885|GITA	thyroid adenoma associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120508551-2	chr8	120508451	120508651	+	719.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198671, intron 1 of 15)	intron (NM_198671, intron 1 of 15)	19685.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-5355491-3	chr15	5355412	5355612	+	873.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-111325.0	NM_008965	19219.0	Mm.18509	NM_008965	ENSMUSG00000039942	Ptger4	EP4|Ptgerep4	prostaglandin E receptor 4 (subtype EP4)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-123015262-1	chr8	123015162	123015362	+	555.0	f0_balb.idr	intron (NM_001081379, intron 1 of 12)	intron (NM_001081379, intron 1 of 12)	27022.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6995445-3	chr19	6995352	6995552	+	731.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027351)	promoter-TSS (NR_027351)	585.0	NM_026675	68323.0	Mm.49041	NM_026675	ENSMUSG00000037349	Nudt22	0610006K04Rik|AI851793|AW545547	nudix (nucleoside diphosphate linked moiety X)-type motif 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-26818341-2	chr10	26818241	26818441	+	676.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_176837, intron 1 of 14)	L1_Mus3|LINE|L1	45829.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-32214352-1	chr11	32214252	32214452	+	595.0	f1_balb.idr	intron (NM_010117, intron 5 of 17)	intron (NM_010117, intron 5 of 17)	7941.0	NM_010117	13650.0	Mm.11545	NM_010117	ENSMUSG00000020282	Rhbdf1	C16ORF8|Dist|Dist1|Egfr-rs|mKIAA4242	rhomboid 5 homolog 1	protein-coding	0.817648831796486	0.421101335873357	0.395060965843376	0.181233150419068	0.171462269540139	0.198756841366119	1.32353716943414	0.182430709138054	0.626186515675814	0.744122934731822	1
Merged-chr16-65497197-1	chr16	65497097	65497297	+	581.0	f1_balb.idr	Intergenic	Intergenic	-23432.0	NM_008849	18736.0	Mm.355440	NM_008849	ENSMUSG00000004842	Pou1f1	GHF-1|Hmp1|Pit-1|Pit1|Pit1-rs1|dw|dwarf	POU domain, class 1, transcription factor 1	protein-coding	0.661177982694239	0.697841840661698	0.686010190694445	1.15901062225511	1.62930406044326	1.10425618082273	1.20915048307765	1.39322889844036	2.63293805215779	0.0861961516843891	0.451213537482243
Merged-chr2-5417395-3	chr2	5417300	5417500	+	925.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030601, intron 1 of 1)	ID4_|SINE|ID	38010.0	NR_030601	100124465.0		NR_030601	ENSMUSG00000078031	Mir466d	Mirn466d	microRNA 466d	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-58232616-4	chr9	58232495	58232695	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178087, intron 4 of 8)	intron (NM_178087, intron 4 of 8)	11445.0	NR_105806	102466639.0		NR_105806	ENSMUSG00000098886	Mir6385	Gm28021|mmu-mir-6385	microRNA 6385	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-105627346-2	chr7	105627311	105627511	+	709.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_018880, intron 1 of 11)	B1_Mur4|SINE|Alu	6160.0	NM_018880	55992.0	Mm.29290	NM_018880	ENSMUSG00000036989	Trim3	BERP1|HAC1|Rnf22	tripartite motif-containing 3	protein-coding	-0.0942706467948159	-0.0783939176945874	-0.0835923641067809	-0.0876049825414378	0.390532071756613	0.285283396008599	0.601073263517317	-0.0869038567259718	3.93807015432538	0.0787525291344879	1
Merged-chr16-43545387-2	chr16	43545287	43545487	+	858.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_181058, intron 3 of 6)	intron (NM_181058, intron 3 of 6)	-95268.0	NR_030576	100124467.0		NR_030576	ENSMUSG00000076372	Mir568	Mirn568|mmu-mir-568	microRNA 568	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-32887434-3	chr19	32887351	32887551	+	843.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	129874.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	0.43390007783682	0.469443036515401	0.458018111432518	0.95787195342415	1.21130729249098	1.62067316055146	0.460555339137945	0.82135015364825	2.51588157299809	0.146505486652933	0.59652924056399
Merged-chr3-22137971-3	chr3	22137878	22138078	+	774.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030732, intron 1 of 15)	intron (NM_030732, intron 1 of 15)	61326.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-16817729-2	chr15	16817629	16817829	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009869, intron 1 of 10)	ORR1E|LTR|ERVL-MaLR	39628.0	NM_009869	12565.0	Mm.439758	NM_009869	ENSMUSG00000025370	Cdh9	-	cadherin 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-72195333-4	chr4	72195236	72195436	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285530, intron 4 of 17)	intron (NM_001285530, intron 4 of 17)	5557.0	NM_011599	21885.0	Mm.278444	NM_011599	ENSMUSG00000008305	Tle1	C230057C06Rik|Estm14|Grg-1|Grg1|Tle4l	transducin-like enhancer of split 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128509239-2	chr10	128509139	128509339	+	772.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	2791.0	NR_105881	102465552.0		NR_105881	ENSMUSG00000099292	Mir6916	Gm27721|mmu-mir-6916	microRNA 6916	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-67414690-4	chr15	67414600	67414800	+	918.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	187931.0	NR_045140	69334.0	Mm.63770	NR_045140	ENSMUSG00000102069	1700012I11Rik	-	RIKEN cDNA 1700012I11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-70760241-2	chr9	70760141	70760341	+	795.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007399, intron 9 of 15)	intron (NM_007399, intron 9 of 15)	81259.0	NM_007399	11487.0	Mm.3037	NM_007399	ENSMUSG00000054693	Adam10	1700031C13Rik|MADM|kuz|kuzbanian	a disintegrin and metallopeptidase domain 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-22314195-4	chr9	22314098	22314298	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6560.0	NM_145612	235050.0	Mm.306038	NM_145612	ENSMUSG00000066829	Zfp810	BC005471	zinc finger protein 810	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106736454-4	chr11	106736341	106736541	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	-14785.0	NM_001271375	380732.0	Mm.343952	NM_001033435	ENSMUSG00000040528	Milr1	Allergin-1|Gm885|Mca32	mast cell immunoglobulin like receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-75658686-4	chr12	75658604	75658804	+	850.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028203, intron 1 of 1)	MTC|LTR|ERVL-MaLR	10833.0	NM_028203	72338.0	Mm.341719	NM_028203	ENSMUSG00000045690	Wdr89	2600001A11Rik	WD repeat domain 89	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-86573076-4	chr9	86572933	86573133	+	992.1785890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001145969, exon 2 of 3)	exon (NM_001145969, exon 2 of 3)	980.0	NM_027100	69519.0	Mm.272517	NM_027100	ENSMUSG00000032417	Rwdd2a	1700030C20Rik|AI848608|Rwdd2	RWD domain containing 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-34906937-4	chr6	34906818	34907018	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013366, intron 3 of 14)	intron (NM_001013366, intron 3 of 14)	3913.0	NM_001013366	101240.0	Mm.152120	NM_001013366	ENSMUSG00000058486	Wdr91	9530020G05Rik|AI987683|AU018665	WD repeat domain 91	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69417698-4	chr11	69417625	69417825	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4050.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83044547-2	chr6	83044447	83044647	+	967.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013586, intron 4 of 13)	intron (NM_013586, intron 4 of 13)	-5164.0	NR_106007	102465630.0		NR_106007	ENSMUSG00000099035	Mir7040	Gm27489|mmu-mir-7040	microRNA 7040	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-21031992-4	chr11	21031891	21032091	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59333.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-144730553-3	chr2	144730452	144730652	+	855.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025314, intron 4 of 5)	intron (NM_025314, intron 4 of 5)	-93114.0	NM_025490	66328.0	Mm.45377	NM_025490	ENSMUSG00000027431	Scp2d1	1700010M22Rik	SCP2 sterol-binding domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-131802226-3	chr7	131802118	131802318	+	714.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-164242.0	NM_173410	233919.0	Mm.208740	NM_173410	ENSMUSG00000040125	Gpr26	9630036A11Rik|A730021D22	G protein-coupled receptor 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102663571-3	chr12	102663480	102663680	+	961.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172584, intron 2 of 9)	intron (NM_172584, intron 2 of 9)	21440.0	NR_035457	100316812.0		NR_035457	ENSMUSG00000089324	Mir1936	mir-1936|mmu-mir-1936	microRNA 1936	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-121584355-2	chr10	121584255	121584455	+	724.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019786, intron 1 of 20)	intron (NM_019786, intron 1 of 20)	2439.0	NM_019786	56480.0	Mm.34580	NM_019786	ENSMUSG00000020115	Tbk1	1200008B05Rik|AI462036|AW048562	TANK-binding kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-25615662-2	chr14	25615562	25615762	+	760.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 6 of 23)	intron (NM_183208, intron 6 of 23)	12149.0	NM_001309430	100188919.0	Mm.473810	NM_001309430		Gm45915	Israa	predicted gene, 45915	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117697475-2	chr8	117697375	117697575	+	653.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4471.0	NM_008290	15486.0	Mm.276466	NM_008290	ENSMUSG00000031844	Hsd17b2	AI194836|AI194967|AI255511	hydroxysteroid (17-beta) dehydrogenase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-30827873-2	chr15	30827773	30827973	+	632.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355502, intron 11 of 21)	B4A|SINE|B4	-211253.0	NR_045186	73784.0	Mm.66947	NR_045186	ENSMUSG00000115474	4930430F21Rik	-	RIKEN cDNA 4930430F21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-11331718-4	chr2	11331619	11331819	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7770.0	NR_040369	100503147.0	Mm.91961	NR_040369	ENSMUSG00000086006	Gm13293	-	predicted gene 13293	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-71389146-4	chr2	71389050	71389250	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026115)	promoter-TSS (NM_026115)	-110.0	NM_026115	107435.0	Mm.272472	NM_026115	ENSMUSG00000027018	Hat1	2410071B14Rik|AA536933|Hat-1|KAT1	histone aminotransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-79840855-3	chr10	79840760	79840960	+	929.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 3 of 4)	ZP3AR|Satellite|Satellite	-13572.0	NM_001077363	19205.0	Mm.265610	NM_008956	ENSMUSG00000006498	Ptbp1	AA407203|AL033359|HNRPI|PTB-1|PTB2|PTB3|PTB4|Ptb|pPTB	polypyrimidine tract binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-9770758-4	chr4	9770701	9770901	+	995.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030693, intron 1 of 3)	intron (NR_030693, intron 1 of 3)	216.0	NR_030693	320152.0	Mm.159946	NR_030693		4930412C18Rik	5730591J02Rik	RIKEN cDNA 4930412C18 gene	ncRNA	4.19608616510207	4.42212455304682	4.5127126857488	3.9610394187357	3.54200359370738	3.30256970113053	3.40799432355617	2.95567203775579	-1.37745176266367	0.003925385591939	0.0551484500375692
Merged-chr13-75879727-2	chr13	75879629	75879829	+	566.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028493, intron 8 of 11)	intron (NM_028493, intron 8 of 11)	39843.0	NM_053108	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	0.142828230820724	0.899174252613184	0.156143663971897	0.151148420454094	0.424644257734765	0.533499545207986	0.632316577503651	0.152021947405168	0.334620418776394	0.866707424451195	1
Merged-chr7-139453475-2	chr7	139453375	139453575	+	697.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355162, intron 1 of 15)	intron (NM_001355162, intron 1 of 15)	52981.0	NM_001355162	212111.0	Mm.28308	NM_183144	ENSMUSG00000025477	Inpp5a	-	inositol polyphosphate-5-phosphatase A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-21202063-4	chr2	21201957	21202157	+	889.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027728, intron 1 of 4)	intron (NM_027728, intron 1 of 4)	3308.0	NM_027728	71233.0	Mm.27658	NM_027728	ENSMUSG00000026679	Enkur	4933434I06Rik|AU016229	enkurin, TRPC channel interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-108629772-4	chr5	108629655	108629855	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001282052)	promoter-TSS (NM_001282052)	22.0	NM_001359924	231580.0	Mm.276647	NM_153569	ENSMUSG00000062234	Gak	D130045N16Rik	cyclin G associated kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-5830091-2	chr1	5829991	5830191	+	578.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1E1A|LTR|ERVL-MaLR	87307.0	NM_010342	226304.0	Mm.291110	NM_010342	ENSMUSG00000033774	Npbwr1	Gpr7|Nbpwr1	neuropeptides B/W receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36194036-4	chr18	36193934	36194134	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167891, intron 1 of 9)	intron (NM_001167891, intron 1 of 9)	3126.0	NM_001167891	100042150.0	Mm.380390	NM_001167891	ENSMUSG00000060275	Nrg2	Don1|NTAK	neuregulin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-109613155-2	chr11	109613055	109613255	+	801.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1766.0	NM_145940	52639.0	Mm.35817	NM_145940	ENSMUSG00000041895	Wipi1	4930533H01Rik|AW411817|D11Ertd498e	WD repeat domain, phosphoinositide interacting 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-51637295-2	chr13	51637195	51637395	+	686.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	MMVL30-int|LTR|ERV1	-7937.0	NM_025415	66197.0	Mm.222228	NM_025415	ENSMUSG00000062248	Cks2	1110038L14Rik|CKSHS2	CDC28 protein kinase regulatory subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-130903076-4	chr7	130902983	130903183	+	994.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133942, intron 6 of 9)	intron (NM_133942, intron 6 of 9)	-5185.0	NR_106028	102466219.0		NR_106028	ENSMUSG00000104914	Mir7061	mmu-mir-7061	microRNA 7061	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133179487-1	chr4	133179387	133179587	+	900.0	f1_c57bl6.idr	intron (NM_153423, intron 2 of 8)	RSINE1|SINE|B4	-16168.0	NR_105984	102466215.0		NR_105984	ENSMUSG00000099202	Mir7017	Gm27945|mmu-mir-7017	microRNA 7017	ncRNA	3.38094186577927	2.97119217289032	1.70788281256671	3.12074509903582	1.75265326488505	1.53925544573957	1.18584550233681	1.43117025417743	-3.3797380117062	0.000725816980194785	0.0149799635235843
Merged-chr18-32396835-2	chr18	32396735	32396935	+	553.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360876, intron 1 of 17)	intron (NM_001360876, intron 1 of 17)	-18551.0	NR_045403	402767.0	Mm.385109	NR_045403	ENSMUSG00000097413	A830052D11Rik	-	RIKEN cDNA A830052D11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70683720-4	chr11	70683615	70683815	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178116, intron 5 of 22)	intron (NM_178116, intron 5 of 22)	4390.0	NM_001190376	216874.0	Mm.473726	NM_178116	ENSMUSG00000040712	Camta2	Kiaa0909-hp|mKIAA0909	calmodulin binding transcription activator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-35127918-4	chr7	35127817	35128017	+	851.966675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	8624.0	NM_007678	12606.0	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-11004496-2	chr4	11004396	11004596	+	746.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175175, intron 1 of 1)	intron (NM_175175, intron 1 of 1)	3123.0	NM_175175	71801.0	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-78532666-4	chr9	78532550	78532750	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50926.0	NM_010106	13627.0	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-28412199-3	chr15	28412119	28412319	+	902.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133365, intron 65 of 78)	B3|SINE|B2	208453.0	NM_133365	110082.0	Mm.248464	NM_133365	ENSMUSG00000022262	Dnah5	AU022615|Dnahc5|Mdnah5|b2b1134Clo|b2b1154Clo|b2b1537Clo|b2b1565Clo|b2b3491Clo|b2b601Clo|mKIAA1603	dynein, axonemal, heavy chain 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46553774-3	chr19	46553666	46553866	+	795.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355233, intron 2 of 6)	intron (NM_001355233, intron 2 of 6)	19416.0	NM_001355233	56350.0	Mm.22085	NM_019718	ENSMUSG00000025035	Arl3	-	ADP-ribosylation factor-like 3	protein-coding	2.80885033396519	3.05150485815781	3.19148532480289	2.57471215634359	2.46549606506151	2.75770952306254	2.40591944764666	2.33392423047299	-0.858999459756163	0.223532133785246	0.714791840691861
Merged-chr1-69689182-4	chr1	69689093	69689293	+	998.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3233.0	NM_011770	22779.0	Mm.106343	NM_011770	ENSMUSG00000025997	Ikzf2	A730095J18Rik|Helios|Zfpn1a2|Znfn1a2	IKAROS family zinc finger 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-84883138-4	chr1	84883031	84883231	+	993.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025386, intron 2 of 3)	intron (NM_025386, intron 2 of 3)	43290.0	NM_025386	66153.0	Mm.381192	NM_025386	ENSMUSG00000073633	Fbxo36	0610008D19Rik|1110020F21Rik|2410002G19Rik|D1Ertd757e	F-box protein 36	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-152313395-2	chr4	152313295	152313495	+	649.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001033489, exon 10 of 17)	exon (NM_001033489, exon 10 of 17)	5230.0	NM_001033489	433809.0	Mm.156205	NM_001033489	ENSMUSG00000058498	Rnf207	D330010C22Rik|Gm143	ring finger protein 207	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-75142806-5	chr7	75142729	75142929	+	909.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360573, intron 7 of 13)	intron (NM_001360573, intron 7 of 13)	77190.0	NM_001360575	64176.0	Mm.273082	NM_153579	ENSMUSG00000053025	Sv2b	A830038F04Rik|AI850768|mKIAA0735	synaptic vesicle glycoprotein 2 b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-164928573-2	chr2	164928472	164928672	+	868.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-16822.0	NM_199027	329559.0	Mm.330776	NM_199027	ENSMUSG00000039834	Zfp335	1810045J01Rik|NIF-1|Nif1|Znf335	zinc finger protein 335	protein-coding	-0.307599413606951	-0.435608221664644	0.00603707273124099	-0.44234586657191	-0.44647756077421	-0.434748763848546	0.128047166996573	-0.441834296251783	0.123730437383921	0.961598102637959	1
Merged-chr4-117124214-2	chr4	117124114	117124314	+	805.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_024078, intron 2 of 6)	intron (NR_024078, intron 2 of 6)	1511.0	NR_024078	78611.0	Mm.446227	NM_001033187		Btbd19	9530048O09Rik|BB115071	BTB (POZ) domain containing 19	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-83676671-2	chr2	83676566	83676766	+	783.666626	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	32088.0	NM_026934	69082.0	Mm.27804	NM_026934	ENSMUSG00000027091	Zc3h15	1700006A17Rik|1810012H02Rik|2610312B22Rik|FM22|Ierepo4	zinc finger CCCH-type containing 15	protein-coding	1.34054942193421	1.53244789368079	1.47366491022474	1.14028922679075	3.16593283924925	3.31509112650293	3.13545085793645	2.18347181526262	4.18863798931583	9.94157876366866e-05	0.00309013114006468
Merged-chr8-71542824-4	chr8	71542725	71542925	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028617)	promoter-TSS (NM_028617)	-105.0	NM_028617	73711.0	Mm.307770	NM_028617	ENSMUSG00000031813	Mvb12a	1110012M11Rik|Fam125a	multivesicular body subunit 12A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-105639923-2	chr7	105639823	105640023	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360053)	promoter-TSS (NM_001360053)	493.0	NM_029802	76932.0	Mm.41637	NM_029802	ENSMUSG00000030881	Arfip2	2310002N04Rik|POR|Por1	ADP-ribosylation factor interacting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-106818583-4	chr1	106818492	106818692	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21867.0	NM_009190	20479.0	Mm.18705	NM_009190	ENSMUSG00000009907	Vps4b	8030489C12Rik|Skd1	vacuolar protein sorting 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28053659-3	chr7	28053572	28053772	+	930.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3580.0	NM_011874	23996.0	Mm.29582	NM_011874	ENSMUSG00000030603	Psmc4	CIP21|MIP224	proteasome (prosome, macropain) 26S subunit, ATPase, 4	protein-coding	2.11028798911546	1.08761339310676	1.06029405770214	2.32299918241542	1.23020739584665	1.59201353488072	2.71753658719565	1.93413677833463	0.540935356683644	0.643953137073789	0.983220888090013
Merged-chr12-41349601-4	chr12	41349518	41349718	+	948.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053122, intron 4 of 6)	L1MA9|LINE|L1	136439.0	NM_001271708	16981.0	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-116416386-3	chr6	116416283	116416483	+	970.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009662, intron 7 of 13)	ORR1E|LTR|ERVL-MaLR	44795.0	NM_009662	11689.0	Mm.41072	NM_009662	ENSMUSG00000025701	Alox5	5-LO|5-LOX|5LO|5LX|AI850497|F730011J02	arachidonate 5-lipoxygenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-170937265-4	chr1	170937163	170937363	+	882.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR12BD_Mm|LTR|ERVK	-9680.0	NM_001160215	98752.0	Mm.1850	NM_145141	ENSMUSG00000038421	Fcrla	BB219290|FCRL|FCRL1|FREB|Fcrlm1|Fcrx|Freb1|mFREB|mFcrX	Fc receptor-like A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99087108-2	chr7	99087032	99087232	+	687.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 5 of 14)	intron (NM_178635, intron 5 of 14)	54012.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-40521330-4	chr9	40521228	40521428	+	967.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357617, intron 1 of 20)	intron (NM_001357617, intron 1 of 20)	10055.0	NM_001357617	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	3.69922984923506	3.20785436124703	4.39438444844741	4.53847331370585	3.9071386963617	4.09763417347921	3.96658692714698	4.0951493852439	-0.0707397085739535	0.881754111927689	0.998431161219273
Merged-chr1-33907060-3	chr1	33906939	33907139	+	921.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177235, intron 1 of 6)	CpG	582.0	NM_177235	320705.0	Mm.336619	NM_177235	ENSMUSG00000042182	Bend6	B230209C24Rik	BEN domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-116075255-7	chr4	116075087	116075287	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025641)	promoter-TSS (NM_025641)	-82.0	NM_153521	230654.0	Mm.3655	NM_153521	ENSMUSG00000028703	Lrrc41	AA409966|AW555107|D630045E04Rik|D730026A16Rik|MUF1	leucine rich repeat containing 41	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-34778644-4	chr2	34778529	34778729	+	980.591675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_145522)	TTS (NM_145522)	6539.0	NM_022310	14828.0	Mm.330160	NM_022310	ENSMUSG00000026864	Hspa5	AL022860|AU019543|Bip|D2Wsu141e|D2Wsu17e|Grp78|Hsce70|SEZ-7|Sez7|baffled|mBiP	heat shock protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-79757233-3	chr2	79757120	79757320	+	660.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290743, intron 3 of 4)	ORR1A4|LTR|ERVL-MaLR	49440.0	NM_001290743	75276.0	Mm.257373	NM_172420	ENSMUSG00000034683	Ppp1r1c	4930565M23Rik|4930579P15Rik	protein phosphatase 1, regulatory (inhibitor) subunit 1C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-14152630-2	chr12	14152577	14152777	+	752.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029007)	promoter-TSS (NM_029007)	-639.0	NM_029007	105005.0	Mm.227253	NM_029007	ENSMUSG00000020607	Fam84a	2310003N02Rik|4731402F03Rik|AW125753|Nse1	family with sequence similarity 84, member A	protein-coding	1.28728096048289	1.93364866933652	1.6557470079545	1.48892618374213	1.70692728532672	0.870204939187401	0.854058811038414	0.839983124575749	-1.6932074446562	0.216268878644168	0.706899928979131
Merged-chr15-73148364-4	chr15	73148276	73148476	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153178, intron 1 of 18)	intron (NM_153178, intron 1 of 18)	36571.0	NM_153178	239528.0	Mm.23095	NM_153178	ENSMUSG00000036698	Ago2	1110029L17Rik|2310051F07Rik|AI225898|AL022874|AW546247|Eif2c2|Gerp95|Gm10365|mKIAA4215	argonaute RISC catalytic subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-4890604-3	chr2	4890505	4890705	+	882.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175400, intron 3 of 8)	intron (NM_175400, intron 3 of 8)	9041.0	NM_175400	109079.0	Mm.34329	NM_175400	ENSMUSG00000026662	Sephs1	1110046B24Rik|AA589574|AI505014|AW111620|SELD|SPS|SPS1	selenophosphate synthetase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-34067252-4	chr15	34067171	34067371	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR23|LTR|ERV1	-15448.0	NM_001357926	67154.0	Mm.130883	NM_026002	ENSMUSG00000022255	Mtdh	2610103J23Rik|3D3|3D3/Lyric|AEG-1|AV353288|D8Bwg1112e|Lyric	metadherin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-49186568-2	chr7	49186468	49186668	+	711.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111016, intron 2 of 38)	MIRb|SINE|MIR	-24410.0	NR_154465	108167511.0	Mm.400599	NR_154465		9130015G15Rik	-	RIKEN cDNA 9130015G15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-57563193-2	chr9	57563093	57563293	+	810.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_022813, intron 1 of 8)	intron (NM_022813, intron 1 of 8)	2249.0	NM_022813	24044.0	Mm.286069	NM_022813	ENSMUSG00000040188	Scamp2	AI875466|Sc2	secretory carrier membrane protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167833744-4	chr2	167833642	167833842	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-98585.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-129434346-2	chr3	129434246	129434446	+	775.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033594, exon 1 of 1)	non-coding (NR_033594, exon 1 of 1)	673.0	NR_033594	435755.0	Mm.430561	NR_033594	ENSMUSG00000105712	Pou5f1-rs4	EG435755|Gm5712|Oct4P1|Otf3-rs4|Otf3d	POU domain, class 5, transcription factor 1, related sequence 4	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-105890746-1	chr1	105890646	105890846	+	832.5	f0_balb.idr	Intergenic	Intergenic	99536.0	NR_151625	635504.0	Mm.359717	NR_151625		Gm7160	EG635504	predicted gene 7160	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125141862-1	chr6	125141762	125141962	+	887.0	f1_c57bl6.idr	intron (NM_138747, intron 15 of 15)	RSINE1|SINE|B4	-3362.0	NR_126495	320678.0	Mm.129415	NM_178787	ENSMUSG00000038271	Iffo1	4733401N06Rik|A930037G23Rik|HOM-TES-103|Iffo	intermediate filament family orphan 1	protein-coding	-0.716237744739947	0.0494062112591463	-0.708535853739007	-0.711427291429827	-0.427796444454228	-0.703953110769027	-0.707710144426032	-0.710921823867411	-1.65205339647367	0.568904339895239	1
Merged-chr10-125323063-2	chr10	125322963	125323163	+	721.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358496, intron 1 of 5)	Lx9|LINE|L1	5900.0	NM_011391	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5702312-2	chr19	5702212	5702412	+	672.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_022012, exon 12 of 12)	exon (NM_022012, exon 12 of 12)	-2159.0	NM_010609	16530.0	Mm.440033	NM_010609	ENSMUSG00000024936	Kcnk7	2310014G03Rik|Kcnk6|Kcnk8|Knot|Mlk3	potassium channel, subfamily K, member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-21745292-4	chr14	21745179	21745379	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001007268, intron 3 of 7)	MER91C|DNA|hAT-Tip100	-2400.0	NM_013849	27389.0	Mm.390674	NM_013849	ENSMUSG00000021768	Dusp13	DUSP13A|DUSP13B|Gm1203|LMW-DSP6|MDSP|TMDP|TS-DSP6	dual specificity phosphatase 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-123385993-4	chr3	123385952	123386152	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_201638)	promoter-TSS (NM_201638)	-62.0	NM_201638	210529.0	Mm.260039	NM_201638	ENSMUSG00000028114	Mettl14	G430022H21Rik|mKIAA1627	methyltransferase like 14	protein-coding	7.53525396696341	7.66085169641207	7.84431934323942	7.75257511974152	7.84519317225097	8.2056859101063	8.18655778049918	8.126649128941	0.406574340078687	0.00318887251325279	0.0473125627543367
Merged-chr5-148509402-4	chr5	148509322	148509522	+	943.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359199, intron 4 of 6)	intron (NM_001359199, intron 4 of 6)	42251.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-24572170-4	chr12	24572055	24572255	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161406)	promoter-TSS (NM_001161406)	-132.0	NM_001161406	195733.0	Mm.263068	NM_145890	ENSMUSG00000020656	Grhl1	LBP-32|MGR|Tcfcp2l2	grainyhead like transcription factor 1	protein-coding	6.34127482741104	6.67416185939213	6.73420124628402	6.58174351672067	6.31731671783242	6.11107213083604	6.28444747597043	5.65045818811391	-0.508982518547575	0.0206035832012726	0.182661422105075
Merged-chr7-145243268-4	chr7	145243198	145243398	+	856.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132644, intron 24 of 24)	intron (NR_132644, intron 24 of 24)	-35179.0	NR_033626	100040049.0	Mm.102235	NR_033626	ENSMUSG00000109305	1810010D01Rik	Gm2572	RIKEN cDNA 1810010D01 gene	ncRNA	1.51509492360656	1.27103044998122	2.00628823924709	0.626098702179097	1.23310118521418	0.657124819901339	0.6417175621904	0.628245783520987	-2.55231289492153	0.105673670640069	0.507102598763296
Merged-chr5-129020085-4	chr5	129019980	129020180	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009391)	promoter-TSS (NM_009391)	-76.0	NM_009391	19384.0	Mm.297440	NM_009391	ENSMUSG00000029430	Ran	-	RAN, member RAS oncogene family	protein-coding	3.49282254216702	3.83014111962818	4.03335003646769	3.74416645866394	3.3767211784242	3.69392967131417	3.94136954010482	3.46487302714354	-0.224660779332901	0.648164623456499	0.984971605872381
Merged-chr12-17557024-3	chr12	17556992	17557192	+	774.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12219.0	NM_013614	18263.0	Mm.34102	NM_013614	ENSMUSG00000011179	Odc1	ODC	ornithine decarboxylase, structural 1	protein-coding	2.00513366979478	1.82622962714042	3.22831874148658	2.68169893181069	2.55835684043959	3.76274029960498	3.39865408106869	2.13656781176044	0.989994150816882	0.212824961376737	0.702521201524664
Merged-chr17-32166068-3	chr17	32165969	32166169	+	715.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008716, intron 1 of 32)	CpG	783.0	NM_008716	18131.0	Mm.439741	NM_008716	ENSMUSG00000038146	Notch3	AW229011|N3|hpbk	notch 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-71196287-4	chr6	71196175	71196375	+	767.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3604.0	NM_017399	14080.0	Mm.22126	NM_017399	ENSMUSG00000054422	Fabp1	Fabpl|L-FABP	fatty acid binding protein 1, liver	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-30647848-4	chr3	30647749	30647949	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027941)	promoter-TSS (NM_027941)	-31.0	NM_027941	71827.0	Mm.45373	NM_027941	ENSMUSG00000027702	Lrrc34	1700007J06Rik|SPATA34	leucine rich repeat containing 34	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-26459040-2	chr2	26458940	26459140	+	870.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_152207, exon 3 of 3)	non-coding (NR_152207, exon 3 of 3)	11079.0	NR_105962	102465602.0		NR_105962	ENSMUSG00000098548	Mir6996	Gm27531|mmu-mir-6996	microRNA 6996	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-145885375-3	chr2	145885279	145885479	+	671.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028724, intron 12 of 12)	intron (NM_028724, intron 12 of 12)	-17862.0	NM_026425	67877.0	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	1.68681171665857	1.89314207457395	1.61144574687688	3.03841297579713	3.22077856618023	2.41706111476948	1.84345283258034	2.68282107507009	0.869513115584445	0.339849889683776	0.84061001438138
Merged-chr7-88242319-3	chr7	88242225	88242425	+	683.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35760.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-55103787-4	chr3	55103730	55103930	+	803.216675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1C|Other|Other	-8278.0	NM_001144988	229285.0	Mm.235523	NM_144895	ENSMUSG00000036580	Spg20	AI840044|C79168|SPARTIN|Spart|TAHCCP1|mKIAA0610	spastic paraplegia 20, spartin (Troyer syndrome) homolog (human)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-98055976-4	chr3	98055850	98056050	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010928, intron 2 of 33)	intron (NM_010928, intron 2 of 33)	42412.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-74909253-3	chr14	74909161	74909361	+	557.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033439, intron 1 of 19)	intron (NM_001033439, intron 1 of 19)	38616.0	NM_001252132	380916.0	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-9885748-1	chr3	9885648	9885848	+	746.0	f1_balb.idr	Intergenic	Intergenic	-52069.0	NM_001195031	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	0.870391079150478	0.233000822467705	0.226190181615448	0.22091924225291	0.959678980149861	0.604244357865079	0.413688212389615	0.22184113523453	0.914772649613809	0.640770869625153	1
Merged-chr10-98883276-2	chr10	98883176	98883376	+	844.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31366.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-42752746-4	chr19	42752676	42752876	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029011)	promoter-TSS (NM_029011)	-1.0	NM_029011	74580.0	Mm.329858	NM_029011	ENSMUSG00000060224	Pyroxd2	3830409H07Rik|4833409A17Rik	pyridine nucleotide-disulphide oxidoreductase domain 2	protein-coding	4.31594802667836	4.48993425052882	4.15161405454311	3.96319075923752	5.2506361809437	5.80832018281385	4.82788488602639	4.69235922293178	1.18906630503879	0.00178138634833091	0.0306497228593799
Merged-chr19-45229646-5	chr19	45229557	45229757	+	732.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5579.0	NM_010691	16814.0	Mm.116815	NM_010691	ENSMUSG00000025216	Lbx1	Lbx1h	ladybird homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70192107-3	chr14	70192000	70192200	+	605.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001271408, exon 12 of 21)	exon (NM_001271408, exon 12 of 21)	146.0	NM_001271409	20410.0	Mm.5068	NM_011366	ENSMUSG00000022091	Sorbs3	SCAM-1|SH3P3|Sh3d4|vinexin-g	sorbin and SH3 domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-34089258-4	chr13	34089216	34089416	+	978.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_046184, intron 3 of 4)	intron (NR_046184, intron 3 of 4)	-11308.0	NM_009450	22151.0	Mm.422827	NM_009450	ENSMUSG00000058672	Tubb2a	M(beta)2|Tubb2	tubulin, beta 2A class IIA	protein-coding	-0.758604916710805	-0.881510999585754	-0.888160599081844	-0.890158287924046	-0.635773171357596	-0.87895920820787	-0.8875879482114	-0.480323219167976	1.93864606206767	0.500989653978189	1
Merged-chr17-84001371-2	chr17	84001271	84001471	+	932.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_130994, intron 1 of 1)	intron (NR_130994, intron 1 of 1)	2819.0	NR_130994	78148.0	Mm.243918	NR_130994		8430430B14Rik	-	RIKEN cDNA 8430430B14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56162398-4	chr17	56162298	56162498	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025566)	promoter-TSS (NM_025566)	-93.0	NM_025566	66443.0	Mm.2312	NM_025566	ENSMUSG00000044469	Tnfaip8l1	2600017J23Rik|TIPE1	tumor necrosis factor, alpha-induced protein 8-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-79413945-4	chr15	79413858	79414058	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10655.0	NM_172608	223693.0	Mm.323358	NM_172608	ENSMUSG00000009035	Tmem184b	2610507A11|4732495E13Rik	transmembrane protein 184b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-92526131-3	chr13	92526032	92526232	+	949.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173392, intron 1 of 17)	intron (NM_173392, intron 1 of 17)	4678.0	NM_173392	218441.0	Mm.259585	NM_173392	ENSMUSG00000021706	Zfyve16	AI035632|B130024H06Rik|B130031L15|mKIAA0305	zinc finger, FYVE domain containing 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107742492-2	chr9	107742392	107742592	+	745.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_148930, exon 24 of 25)	exon (NM_148930, exon 24 of 25)	28510.0	NM_148930	83486.0	Mm.259197	NM_148930	ENSMUSG00000032580	Rbm5	D030069N10Rik	RNA binding motif protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-57518840-2	chr16	57518740	57518940	+	880.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 4 of 4)	intron (NM_001040397, intron 4 of 4)	-30402.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167605392-4	chr2	167605289	167605489	+	796.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26616.0	NM_001311146	66589.0	Mm.278783	NM_023230	ENSMUSG00000078923	Ube2v1	0610011J09Rik|AI256840|CROC-1|CROC1|D7Bwg1382e|UEV-1	ubiquitin-conjugating enzyme E2 variant 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-54766427-1	chr14	54766327	54766527	+	606.0	f0_balb.idr	intron (NM_016972, intron 1 of 10)	intron (NM_016972, intron 1 of 10)	15459.0	NM_016972	50934.0	Mm.276831	NM_016972	ENSMUSG00000022180	Slc7a8	AA408822|LAT2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	protein-coding	0.261885143720256	0.151749447082823	0.14732186826369	0.143937666306121	0.47796186515892	0.70403768682599	0.661060704361358	0.144526875433151	3.27994711960297	0.108837852185017	1
Merged-chr1-131073170-2	chr1	131073070	131073270	+	842.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008551, intron 1 of 9)	Tigger6b|DNA|TcMar-Tigger	24673.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117712637-2	chr10	117712537	117712737	+	695.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-1879.0	NM_001288586	17246.0	Mm.22670	NM_010786	ENSMUSG00000020184	Mdm2	1700007J15Rik|AA415488|Mdm-2	transformed mouse 3T3 cell double minute 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171270316-4	chr1	171270213	171270413	+	986.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020579)	promoter-TSS (NM_020579)	-15.0	NM_020579	57370.0	Mm.274011	NM_020579	ENSMUSG00000052423	B4galt3	9530061M23Rik|AA104562|AW125175|ESTM26|ESTM6|R74981	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 3	protein-coding	2.72376023303206	2.55839179833983	3.80470772350805	2.5042180663318	1.66840512021151	1.64778054361473	2.48536519164211	1.25363236136	-2.43461708312368	0.00667214547568907	0.0823459791378874
Merged-chr17-7396258-3	chr17	7396174	7396374	+	678.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TCCC)n|Simple_repeat|Simple_repeat	-10969.0	NM_001142539	667055.0	Mm.327371	NM_001142539	ENSMUSG00000056133	Gm9992	-	predicted gene 9992	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-140902570-3	chr4	140902455	140902655	+	677.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3805.0	NM_008812	18600.0	Mm.2296	NM_008812	ENSMUSG00000028927	Padi2	Pdi|Pdi2|mKIAA0994	peptidyl arginine deiminase, type II	protein-coding	1.55099819554562	0.841550412720709	1.48646729196532	0.816070662926897	1.72830482388202	1.55859000057768	1.36915265955286	0.81803966381605	0.690135172511853	0.625649163159927	0.980912176761026
Merged-chr11-95825093-4	chr11	95824994	95825194	+	938.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153104, intron 1 of 2)	intron (NM_153104, intron 1 of 2)	594.0	NM_153104	237928.0	Mm.133075	NM_153104	ENSMUSG00000050860	Phospho1	D11Moh36|Phospo1	phosphatase, orphan 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-58448242-4	chr13	58448099	58448299	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44856.0	NM_001301341	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-172013049-1	chr1	172012949	172013149	+	569.0	f1_balb.idr	intron (NM_033509, intron 2 of 7)	intron (NM_033509, intron 2 of 7)	14246.0	NM_033509	93840.0	Mm.36148	NM_033509	ENSMUSG00000026556	Vangl2	C530001F03Rik|Lootl|Lp|Lpp1|Ltap|Vang1l2|loop-tail|ska17|ska<m17Jus>|stbm|strabismus	VANGL planar cell polarity 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-13587280-4	chr9	13587184	13587384	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32705.0	NM_001013813	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	6.07517651148745	6.79665620691293	6.66614269814923	6.26579935351705	6.56366812025082	6.3687793655592	6.62320858756024	6.2422745081449	-0.0145278747789334	0.947408226797308	0.998431161219273
Merged-chr9-107950942-4	chr9	107950837	107951037	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011634)	promoter-TSS (NM_011634)	-26.0	NM_011634	22036.0	Mm.297870	NM_011634	ENSMUSG00000032586	Traip	Trip	TRAF-interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-76292853-3	chr5	76292741	76292941	+	845.1333619999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007715, intron 2 of 22)	L1_Mus2|LINE|L1	10661.0	NM_001305222	12753.0	Mm.3552	NM_007715	ENSMUSG00000029238	Clock	5330400M04Rik|KAT13D	circadian locomotor output cycles kaput	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91742498-2	chr16	91742398	91742598	+	602.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110276, intron 1 of 15)	intron (NM_001110276, intron 1 of 15)	13127.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-39003023-2	chr2	39002923	39003123	+	805.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025592, intron 3 of 3)	intron (NM_025592, intron 3 of 3)	2108.0	NM_025592	66489.0	Mm.345333	NM_025592	ENSMUSG00000062997	Rpl35	2410039E09Rik	ribosomal protein L35	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116034487-2	chr11	116034439	116034639	+	784.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286006, intron 1 of 15)	(CAAAA)n|Simple_repeat|Simple_repeat	4223.0	NM_172569	217331.0	Mm.297706	NM_172569	ENSMUSG00000020770	Unk	B230379M23Rik|Unkh|Zc3h5|Zc3hdc5|mKIAA1753	unkempt family zinc finger	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83530658-4	chr11	83530557	83530757	+	946.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013653)	promoter-TSS (NM_013653)	-139.0	NM_013653	20304.0	Mm.284248	NM_013653	ENSMUSG00000035042	Ccl5	MuRantes|RANTES|SISd|Scya5|TCP228	chemokine (C-C motif) ligand 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-42887631-4	chr17	42887525	42887725	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11201.0	NM_009847	12488.0	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding	1.22275804823835	0.340770195981723	0.332550367978529	0.326163577669515	0.317067049024645	0.72957403264415	0.953794635824863	0.660593424064376	0.238825783753837	0.897974606944591	1
Merged-chr15-63740829-2	chr15	63740735	63740935	+	689.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	67904.0	NM_031378	83492.0	Mm.335619	NM_031378	ENSMUSG00000079025	Gsdmc	Gsdmc1|Mlze	gasdermin C	protein-coding	1.76654294443682	0.984251209971191	2.21180662616804	1.35353974404546	1.56826785746041	1.24498290902112	2.23126527558726	0.949723284456903	-0.189445021746447	0.878763122910127	0.998431161219273
Merged-chr5-64815216-2	chr5	64815116	64815316	+	567.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008453, intron 1 of 5)	intron (NM_008453, intron 1 of 5)	11693.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117166638-3	chr11	117166543	117166743	+	864.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33018.0	NM_001113486	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-50404036-3	chr15	50403863	50404063	+	734.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	485086.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-3130389-2	chr11	3130276	3130476	+	794.583374	f0_balb.idr|f1_balb.idr	non-coding (NR_003517, exon 7 of 7)	non-coding (NR_003517, exon 7 of 7)	6355.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-94173885-3	chr13	94173786	94173986	+	987.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172589, intron 2 of 3)	intron (NM_172589, intron 2 of 3)	111395.0	NM_029153	107767.0	Mm.201455	NM_029153	ENSMUSG00000021687	Scamp1	4930505M11Rik|AI415563|AW122395	secretory carrier membrane protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-9337332-4	chr11	9337178	9337378	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178259, intron 27 of 61)	intron (NM_178259, intron 27 of 61)	145336.0	NM_178259	268379.0	Mm.39270	NM_178259	ENSMUSG00000004668	Abca13	9830132L24|A930002G16Rik|AI956815	ATP-binding cassette, sub-family A (ABC1), member 13	protein-coding	1.26216483411456	2.39880415374329	1.54615175222146	2.23336583998265	0.877309248452902	1.77656819504637	1.18078242016745	0.907519138206258	-2.21915827171116	0.0734504414751412	0.409647915188285
Merged-chr15-79329503-2	chr15	79329403	79329603	+	723.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-1132.0	NM_001199023	53357.0	Mm.155620	NM_016915	ENSMUSG00000042632	Pla2g6	BB112799|PNPLA9|iPLA(2)beta|iPLA2|iPLA2beta	phospholipase A2, group VI	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-69607070-4	chr3	69606986	69607186	+	976.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8126.0	NM_020026	26879.0	Mm.153710	NM_020026	ENSMUSG00000043300	B3galnt1	B3galt3|b3GT3	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 1	protein-coding	-1.8429182434137	-1.8129848525291	-1.82203695700074	-1.54461076807193	-1.84081697472045	-1.81102322372834	-1.81998775896484	-1.82814164409203	-1.43114970378833	0.684630132144154	1
Merged-chr10-125966180-4	chr10	125966068	125966268	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177152)	promoter-TSS (NM_177152)	-51.0	NM_177152	320398.0	Mm.275586	NM_177152	ENSMUSG00000020105	Lrig3	9030421L11Rik|9130004I02Rik|9430095K15Rik|mKIAA3016	leucine-rich repeats and immunoglobulin-like domains 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-62338663-3	chr10	62338514	62338714	+	772.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010438, intron 4 of 21)	intron (NM_010438, intron 4 of 21)	1807.0	NM_001146100	15275.0	Mm.196605	NM_010438	ENSMUSG00000037012	Hk1	BB404130|Hk-1|Hk1-s|dea|mHk1-s	hexokinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-33004635-4	chr13	33004525	33004725	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009256)	promoter-TSS (NM_009256)	84.0	NM_009256	20723.0	Mm.245041	NM_009256	ENSMUSG00000045827	Serpinb9	BB283241|CAP-3|CAP3|PI-9|PI9|Spi6|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-148464629-4	chr5	148464567	148464767	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64763.0	NM_007513	11987.0	Mm.275489	NM_007513	ENSMUSG00000041313	Slc7a1	4831426K01Rik|AI447493|Atrc-1|Atrc1|Cat1|Rec-1|Rev-1|mCAT-1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-39797793-2	chr15	39797693	39797893	+	657.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045788, exon 2 of 3)	non-coding (NR_045788, exon 2 of 3)	748.0	NR_045788	100503072.0	Mm.446661	NR_045788	ENSMUSG00000087695	Gm16291	-	predicted gene 16291	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99382167-2	chr7	99382067	99382267	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001362166, exon 1 of 19)	5' UTR (NM_001362166, exon 1 of 19)	649.0	NM_001362166	233552.0	Mm.286317	NM_201352	ENSMUSG00000035314	Gdpd5	BC024955|Gde2	glycerophosphodiester phosphodiesterase domain containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171699207-3	chr1	171699117	171699317	+	800.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360767, intron 2 of 2)	intron (NM_001360767, intron 2 of 2)	17225.0	NM_001360767	12506.0	Mm.1738	NM_007649	ENSMUSG00000015355	Cd48	AI449234|AW610730|BCM1|BLAST|BLAST-1|BLAST1|Bcm-1|MEM-102|SLAMF2|Sgp-60	CD48 antigen	protein-coding	2.22449054864247	2.07922833233775	2.86149902168658	2.1020269160608	2.43120897836182	1.42750763977781	2.63402751996528	2.35513751650618	-0.155149840033883	0.862014070028245	0.998431161219273
Merged-chr11-69757149-2	chr11	69757049	69757249	+	811.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291068, intron 1 of 28)	B2_Mm1a|SINE|B2	1484.0	NM_001291068	20020.0	Mm.16533	NM_009089	ENSMUSG00000005198	Polr2a	220kDa|Rpb1|Rpo2-1	polymerase (RNA) II (DNA directed) polypeptide A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132926740-2	chr4	132926640	132926840	+	818.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	-4189.0	NM_001163792	230789.0	Mm.11473	NM_145553	ENSMUSG00000028878	Fam76a	-	family with sequence similarity 76, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-28726409-2	chr19	28726309	28726509	+	749.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46332.0	NM_175459	226075.0	Mm.223508	NM_175459	ENSMUSG00000052942	Glis3	4833409N03Rik|E330013K21Rik	GLIS family zinc finger 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-54883202-1	chr1	54883102	54883302	+	640.0	f0_balb.idr	intron (NM_001081433, intron 1 of 27)	intron (NM_001081433, intron 1 of 27)	43185.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-22653389-4	chr8	22653310	22653510	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011130)	promoter-TSS (NM_011130)	27.0	NM_011130	18970.0	Mm.123211	NM_011130	ENSMUSG00000031536	Polb	A430088C08Rik	polymerase (DNA directed), beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-83273099-2	chr4	83272999	83273199	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027238, intron 2 of 19)	RMER17B|LTR|ERVK	51090.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-37666982-2	chr13	37666882	37667082	+	587.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-159056.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-33795556-2	chr18	33795413	33795613	+	923.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_013512)	TTS (NM_013512)	621.0	NR_038151	69749.0	Mm.248787	NR_038151	ENSMUSG00000087590	Epb41l4aos	2410004N09Rik|Epb4.1l4aos	erythrocyte membrane protein band 4.1 like 4a, opposite strand	ncRNA	2.68346527947927	2.73012795892941	1.44029027839446	1.6071633483648	2.18029161516741	2.56907365679674	1.45095250030358	1.15676824389905	-0.659625819932811	0.533254873567495	0.952082138848632
Merged-chr4-63594452-2	chr4	63594352	63594552	+	748.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6312.0	NM_001354647	670833.0	Mm.32213	NM_001354647	ENSMUSG00000084782	Gm11213	-	predicted gene 11213	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-122572536-1	chr6	122572436	122572636	+	628.0	f1_c57bl6.idr	Intergenic	Intergenic	18727.0	NM_009645	11628.0	Mm.391503	NM_009645	ENSMUSG00000040627	Aicda	Aid|Arp2	activation-induced cytidine deaminase	protein-coding	3.10286785735775	1.48905934460942	3.02031854315229	2.8568233830463	2.65070457508722	2.01411545423442	1.94787940107529	2.87155275649046	-0.635326081532673	0.458415281275397	0.919607527898796
Merged-chr4-133662543-3	chr4	133662493	133662693	+	930.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001145956, exon 3 of 3)	exon (NM_001145956, exon 3 of 3)	10054.0	NM_001145955	230801.0	Mm.217004	NM_178698	ENSMUSG00000043257	Pigv	B330013B03|D430024F16Rik	phosphatidylinositol glycan anchor biosynthesis, class V	protein-coding	2.51134088264059	2.01876055830894	1.39097013654917	1.87374794776595	3.4413971061224	2.99629714517434	2.77425460566929	4.29182772812052	2.73417828994736	0.000555900845576598	0.012170982381803
Merged-chr8-105305791-5	chr8	105305714	105305914	+	834.200012	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_148952)	TTS (NM_148952)	213.0	NM_172760	234683.0	Mm.237966	NM_172760	ENSMUSG00000014791	Elmo3	9930107J06|BC058752|CED-12|Ced12	engulfment and cell motility 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99374529-3	chr7	99374438	99374638	+	726.533325	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-6980.0	NM_001362168	233552.0	Mm.286317	NM_201352	ENSMUSG00000035314	Gdpd5	BC024955|Gde2	glycerophosphodiester phosphodiesterase domain containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-32881790-3	chr11	32881691	32881891	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57197.0	NM_027050	69351.0	Mm.65488	NM_027050	ENSMUSG00000020270	Smim23	1700008A04Rik	small integral membrane protein 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28341444-2	chr17	28341344	28341544	+	753.875	f1_balb.idr|f1_c57bl6.idr	exon (NM_011566, exon 2 of 13)	exon (NM_011566, exon 2 of 13)	8902.0	NM_001204156	21678.0	Mm.6655	NM_011566	ENSMUSG00000002249	Tead3	DTEF-1|ETFR-1|TEAD-3|TEF-5|Tcf13r2	TEA domain family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-88292363-2	chr1	88292263	88292463	+	969.1666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus4|LINE|L1	-14349.0	NM_134252	171382.0	Mm.218753	NM_134252	ENSMUSG00000036251	Trpm8	CMR1|LTRPC6|LTrpC-6|TRPP8|Trp-p8	transient receptor potential cation channel, subfamily M, member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-81335865-2	chr7	81335765	81335965	+	888.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9369.0	NM_009092	20068.0	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34344252-2	chr17	34344152	34344352	+	982.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_010381, intron 1 of 3)	intron (NM_010381, intron 1 of 3)	393.0	NM_010381	100504404.0	Mm.15680	NM_010381		H2-Ea-ps	AI323765|E-alpha-f|H-2Ea|H2-Ea|I-Ealpha|Ia-3|Ia3|MHC-H2-Ea	histocompatibility 2, class II antigen E alpha, pseudogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-113594575-4	chr7	113594475	113594675	+	896.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29588.0	NR_126544	69295.0	Mm.396150	NR_126544	ENSMUSG00000084984	Far1os	1700006P19Rik	fatty acyl CoA reductase 1, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-54736976-3	chr11	54736838	54737038	+	773.549988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178626, intron 3 of 5)	intron (NM_178626, intron 3 of 5)	50765.0	NM_178626	72729.0	Mm.29476	NM_178626	ENSMUSG00000052298	Cdc42se2	2810404F18Rik|AA408783|AA536669|SPEC2	CDC42 small effector 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-69065455-2	chr3	69065355	69065555	+	554.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20713.0	NM_025863	66949.0	Mm.176695	NM_025863	ENSMUSG00000034317	Trim59	2310035M22Rik|2700022F13Rik|Mrf1|TSBF1	tripartite motif-containing 59	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-44782588-2	chr17	44782488	44782688	+	766.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178652, intron 1 of 11)	intron (NM_178652, intron 1 of 11)	5422.0	NM_178652	109115.0	Mm.431327	NM_178652	ENSMUSG00000038954	Supt3	2310066G22Rik|AI315192|SPT3|SPT3L|Supt3h	suppressor of Ty 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-63137182-2	chr9	63137082	63137282	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001163755)	TTS (NM_001163755)	9798.0	NM_172446	207667.0	Mm.36349	NM_172446	ENSMUSG00000022245	Skor1	AV273001|C230094B15Rik|Corl1|Lbxcor1	SKI family transcriptional corepressor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-24100541-4	chr5	24100451	24100651	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026448)	promoter-TSS (NM_026448)	-39.0	NM_026448	52323.0	Mm.273768	NM_026448	ENSMUSG00000028986	Klhl7	2700038B03Rik|D5Ertd363e|SBBI26	kelch-like 7	protein-coding	5.32558352666781	5.75754278882689	4.94410927129142	5.82500447079989	5.45498248626899	4.95499641878339	5.55310342502437	5.40879830638035	-0.159543004925689	0.595798454743897	0.971416365479727
Merged-chr12-71012255-4	chr12	71012158	71012358	+	692.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045056, intron 2 of 2)	B4A|SINE|B4	3565.0	NR_045056	73204.0	Mm.363770	NR_045055	ENSMUSG00000085622	3110056K07Rik	4921536K06Rik	RIKEN cDNA 3110056K07 gene	ncRNA	0.569469009598754	0.446427204239135	1.01592764747677	0.600560662130839	1.16478438055375	0.448167304508057	0.624298415483925	0.872177460280962	0.73339955502102	0.653047120232247	1
Merged-chr18-46447796-4	chr18	46447690	46447890	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18026.0	NR_045438	72076.0	Mm.82766	NM_028086		Mospd4	2010013H21Rik	motile sperm domain containing 4	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16819946-2	chr7	16819846	16820046	+	552.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039878, intron 1 of 17)	intron (NM_001039878, intron 1 of 17)	-3214.0	NM_173430	243853.0	Mm.39703	NM_173430	ENSMUSG00000048920	Fkrp	A830029B19Rik|AI842067|AI847300|LGMD1I|MDC1C	fukutin related protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-29767920-2	chr6	29767827	29768027	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021414)	promoter-TSS (NM_021414)	-516.0	NM_021414	74340.0	Mm.210899	NM_021414	ENSMUSG00000029772	Ahcyl2	4631427C17Rik|AI227036|Adohcyase3|mKIAA0828	S-adenosylhomocysteine hydrolase-like 2	protein-coding	4.17153459764631	4.63278272469727	3.5314344177435	4.01927934217607	3.79055393495655	3.86772726786052	3.10854738053752	4.81318470579382	-0.13188802674473	0.797301078694123	0.998431161219273
Merged-chr6-124717558-4	chr6	124717462	124717662	+	730.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_029554)	TTS (NR_029554)	423.0	NR_029554	387159.0		NR_029554	ENSMUSG00000065474	Mir141	Mirn141|mir-141|mmu-mir-141	microRNA 141	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-172396044-2	chr2	172395944	172396144	+	902.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080820, intron 1 of 6)	intron (NM_001080820, intron 1 of 6)	2250.0	NM_001276423	320664.0	Mm.210195	NM_001033538	ENSMUSG00000074570	Cass4	F730031O20Rik	Cas scaffolding protein family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-149173859-4	chr4	149173741	149173941	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7136.0	NM_001081274	110208.0	Mm.252080	NM_025801	ENSMUSG00000028961	Pgd	0610042A05Rik|AU019875|C78335	phosphogluconate dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-61452916-4	chr10	61452814	61453014	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010124)	promoter-TSS (NM_010124)	-245.0	NM_010124	13688.0	Mm.259516	NM_010124	ENSMUSG00000020091	Eif4ebp2	2810011I19Rik|4E-BP2|AA792569|BC010348|PHAS-II	eukaryotic translation initiation factor 4E binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-15223527-1	chr18	15223427	15223627	+	549.0	f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	-72081.0	NM_134112	106931.0	Mm.329299	NM_134112	ENSMUSG00000036225	Kctd1	4933402K10Rik|AI661543|AW553000	potassium channel tetramerisation domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-38286709-4	chr2	38286548	38286748	+	874.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146122, intron 1 of 21)	intron (NM_146122, intron 1 of 21)	736.0	NM_146122	227801.0	Mm.314245	NM_146122	ENSMUSG00000035392	Dennd1a	6030446I19Rik|connecdenn	DENN/MADD domain containing 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-79193998-3	chr2	79193897	79194097	+	846.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61429.0	NM_010576	16401.0	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-142534746-2	chr7	142534646	142534846	+	910.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011288, intron 1 of 4)	intron (NM_011288, intron 1 of 4)	1629.0	NM_011288	19935.0	Mm.12144	NM_011288	ENSMUSG00000037772	Mrpl23	L23mrp|Rpl23|Rpl23l	mitochondrial ribosomal protein L23	protein-coding	-1.84297643846673	-1.8130099360596	-1.82207205372894	-1.6869274651563	-1.84087284540582	-1.81104613735712	-1.82002058892457	-1.6855950118199	0.037684011990387	0.991491645451152	1
Merged-chr18-60957466-2	chr18	60957366	60957566	+	730.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_105948)	promoter-TSS (NR_105948)	-607.0	NR_105948	102465593.0		NR_105948	ENSMUSG00000098475	Mir6982	Gm27890|mmu-mir-6982	microRNA 6982	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-58282722-4	chr2	58282613	58282813	+	885.43335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033369, intron 5 of 7)	intron (NM_001033369, intron 5 of 7)	5934.0	NR_040365	100502932.0	Mm.417207	NR_040365	ENSMUSG00000086995	Gm13544	-	predicted gene 13544	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-14367037-4	chr16	14366875	14367075	+	800.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008576, intron 1 of 30)	L2|LINE|L2	5417.0	NM_008576	17250.0	Mm.196634	NM_008576	ENSMUSG00000023088	Abcc1	Abcc1a|Abcc1b|MRP|Mdrap|Mrp1	ATP-binding cassette, sub-family C (CFTR/MRP), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-195241706-4	chr1	195241579	195241779	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-64964.0	NM_007758	12902.0	Mm.235387	NM_007758	ENSMUSG00000026616	Cr2	C3DR|CD21|CD35|Cr-1|Cr-2|Cr1	complement receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-108855483-2	chr9	108855383	108855583	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134420, intron 1 of 17)	intron (NM_134420, intron 1 of 17)	1440.0	NM_134420	171429.0	Mm.45201	NM_134420	ENSMUSG00000023259	Slc26a6	B930010B04Rik|CFEX|Pat-1|Pat1	solute carrier family 26, member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-8902813-4	chr12	8902722	8902922	+	897.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	T-rich|Low_complexity|Low_complexity	-18485.0	NM_008640	17775.0	Mm.30071	NM_008640	ENSMUSG00000020585	Laptm4a	AA286466|LAPTM4|MTP|Mtrp|mKIAA0108	lysosomal-associated protein transmembrane 4A	protein-coding	-1.23460850737911	-1.20778397121128	-0.764630119593346	-1.22720560894177	-1.23414887269344	-1.20547328650897	-1.04825763330377	-1.22563779064292	-1.35544360464281	0.683796689557226	1
Merged-chr8-41003208-4	chr8	41003098	41003298	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005863, intron 7 of 13)	L1MB2|LINE|L1	-14270.0	NR_015457	78849.0	Mm.440930	NR_015457	ENSMUSG00000084960	B430010I23Rik	-	RIKEN cDNA B430010I23 gene	ncRNA	7.33969582519136	7.54926887523516	7.68586342080285	7.83467639780296	6.81563162741471	6.6694101241021	6.27368200825705	7.03145873245416	-0.927721864596079	6.17682589148274e-07	4.31715154703057e-05
Merged-chr11-72216657-4	chr11	72216563	72216763	+	876.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001163728, exon 1 of 1)	3' UTR (NM_001163728, exon 1 of 1)	-1071.0	NM_026068	67279.0	Mm.159496	NM_026068	ENSMUSG00000020801	Med31	3110004H13Rik|CGI-125|l11Jus15	mediator complex subunit 31	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126704274-4	chr7	126704177	126704377	+	847.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001301374)	promoter-TSS (NM_001301374)	-57.0	NM_001301374	12721.0	Mm.290482	NM_009898	ENSMUSG00000030707	Coro1a	Clabp|Lmb3|TACO|p57	coronin, actin binding protein 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-47835678-4	chr6	47835556	47835756	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027477)	promoter-TSS (NM_027477)	-5.0	NM_027477	272347.0	Mm.169059	NM_027477	ENSMUSG00000062519	Zfp398	5730513I23Rik	zinc finger protein 398	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-108743379-4	chr8	108743267	108743467	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007496, intron 1 of 9)	intron (NM_007496, intron 1 of 9)	28723.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-87795754-2	chr3	87795654	87795854	+	755.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033124)	promoter-TSS (NM_001033124)	-592.0	NM_001033124	18211.0	Mm.80682	NM_001033124	ENSMUSG00000028072	Ntrk1	C80751|Tkr|TrkA|trk	neurotrophic tyrosine kinase, receptor, type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-61971651-4	chr14	61971566	61971766	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-289293.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-134589142-3	chr4	134589036	134589236	+	728.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207237, intron 4 of 11)	intron (NM_207237, intron 4 of 11)	-21285.0	NR_105829	102465216.0		NR_105829	ENSMUSG00000099289	Mir6403	Gm27992|mmu-mir-6403	microRNA 6403	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-9033891-2	chr12	9033791	9033991	+	608.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029321, intron 1 of 2)	B1_Mur1|SINE|Alu	3894.0	NM_029321	75516.0	Mm.37581	NM_029321	ENSMUSG00000066637	Ttc32	1700013G20Rik	tetratricopeptide repeat domain 32	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-40247477-3	chr19	40247380	40247580	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016861, intron 3 of 6)	intron (NM_016861, intron 3 of 6)	24136.0	NM_016861	54132.0	Mm.5567	NM_016861	ENSMUSG00000055044	Pdlim1	CLP36|Clim1|mClim1	PDZ and LIM domain 1 (elfin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-11957550-3	chr19	11957438	11957638	+	905.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8306.0	NM_001033174	76303.0	Mm.291279	NM_001033174	ENSMUSG00000024687	Osbp	1110018F06Rik|AW559088|mKIAA4220	oxysterol binding protein	protein-coding	3.87401069319584	2.95577696331648	3.83997779738985	3.46986378088747	2.11227423155825	2.00877885552102	1.36724452859571	1.31494578372756	-3.63190167815211	1.57772901027327e-05	0.000664973981215177
Merged-chr7-130646241-4	chr7	130646197	130646397	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004468, intron 3 of 21)	CpG	-46259.0	NM_001347637	57752.0	Mm.86322	NM_021314	ENSMUSG00000030852	Tacc2	mKIAA4180	transforming, acidic coiled-coil containing protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-14974811-3	chr14	14974735	14974935	+	763.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195229, intron 29 of 34)	L1_Mus3|LINE|L1	154020.0	NM_001195229	674895.0	Mm.317563	NM_001034865	ENSMUSG00000042567	Nek10	Gm282	NIMA (never in mitosis gene a)- related kinase 10	protein-coding	1.82665907711248	1.09891500941214	1.07129299264771	1.04913377863307	2.37423693610929	2.32665026764648	1.87957939020169	2.57504097122602	2.92948646307898	0.0117486568391414	0.121838673569423
Merged-chr3-98069486-4	chr3	98069369	98069569	+	903.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010928, intron 2 of 33)	intron (NM_010928, intron 2 of 33)	55931.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-58870143-4	chr15	58870082	58870282	+	954.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2467.0	NM_026642	68260.0	Mm.278805	NM_026642	ENSMUSG00000037085	Trmt12	4632406N01Rik|AI449275|Tyw2	tRNA methyltranferase 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55689764-4	chr19	55689661	55689861	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045318, intron 2 of 3)	intron (NR_045318, intron 2 of 3)	12443.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	4.27237973968975	3.90089534239247	4.75281297439021	4.58561674197111	4.15532315463667	5.34933660214412	5.29071127539078	5.29345184027538	0.827061213779507	0.0352452954848916	0.265623778409378
Merged-chr7-46917939-4	chr7	46917874	46918074	+	877.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021884, intron 1 of 9)	L2a|LINE|L2	1995.0	NM_001348089	22088.0	Mm.241334	NM_021884	ENSMUSG00000014402	Tsg101	AI255943|CC2	tumor susceptibility gene 101	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-62492771-4	chr3	62492669	62492869	+	880.6083369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028136, intron 8 of 24)	intron (NM_028136, intron 8 of 24)	14219.0	NM_028136	72162.0	Mm.224233	NM_028136	ENSMUSG00000027770	Dhx36	2810407E23Rik|AI452301|AU022184|Ddx36|mKIAA1488	DEAH (Asp-Glu-Ala-His) box polypeptide 36	protein-coding	1.60624092348466	0.497054150481328	1.79817884912436	0.471238190479173	1.20166509429199	0.500252163862385	0.485849078509681	0.473247257374848	-2.10554579078509	0.231377621613227	0.725747702762793
Merged-chr16-89913967-2	chr16	89913867	89914067	+	663.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009384, intron 2 of 27)	intron (NM_009384, intron 2 of 27)	46860.0	NM_009384	21844.0	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-83631926-4	chr7	83631825	83632025	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023377)	promoter-TSS (NM_023377)	-92.0	NM_023377	170460.0	Mm.357953	NM_023377	ENSMUSG00000046027	Stard5	2310058G22Rik|AI607880|D7Ertd152e	StAR-related lipid transfer (START) domain containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-113874939-3	chr5	113874800	113875000	+	848.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011779, intron 2 of 10)	intron (NM_011779, intron 2 of 10)	33806.0	NM_011779	23790.0	Mm.260158	NM_011779	ENSMUSG00000004530	Coro1c	AL022675|AW455561|AW548837	coronin, actin binding protein 1C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-146728448-2	chr5	146728348	146728548	+	830.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	66508.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	-1.31349849087795	-1.28274354783242	-1.29349452597086	-1.3023256995151	-1.3130151546297	-1.28041376602105	-0.694015972326031	-1.30074492367298	2.57396649482007	0.456321314346772	1
Merged-chr10-21603794-2	chr10	21603729	21603929	+	753.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_027968, intron 2 of 2)	Lx8|LINE|L1	10684.0	NR_027968	67692.0	Mm.54306	NM_183266	ENSMUSG00000050844	1700020N01Rik	-	RIKEN cDNA 1700020N01 gene	ncRNA	2.54978164507984	1.50950533192072	2.3054173576575	1.43633234961495	2.22679976546109	1.89935178185976	1.98192631917852	1.62669716849511	-0.277781042643695	0.780458237221915	0.998431161219273
Merged-chr7-142363277-3	chr7	142363171	142363371	+	896.3666380000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347541, intron 2 of 2)	intron (NM_001347541, intron 2 of 2)	8988.0	NM_177265	320802.0	Mm.154486	NM_177265	ENSMUSG00000045777	Ifitm10	6330512M04Rik|AI848576|DSPA3	interferon induced transmembrane protein 10	protein-coding	1.09318421951881	0.958756449211633	1.03122279089328	0.989271483362183	0.418086244995219	0.444144758079318	0.435721788103347	0.428492132913767	-4.45756787448354	0.0111398312983479	1
Merged-chr13-16020821-2	chr13	16020721	16020921	+	871.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008380, intron 4 of 4)	intron (NM_008380, intron 4 of 4)	2602.0	NR_155430	100503142.0	Mm.359204	NR_155430		B230303A05Rik	B230303A05|EG328191	U1 small nuclear ribonucleoprotein 1C pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27912580-1	chr17	27912480	27912680	+	686.0	f1_balb.idr	intron (NM_181413, intron 1 of 24)	intron (NM_181413, intron 1 of 24)	3274.0	NM_181413	224650.0	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	2.47538098594483	1.16003845543956	1.13523842930129	2.25022030276273	1.74726740486378	1.63590164386586	2.24425121745492	1.8376782538887	-0.0920230541452393	0.934794483760517	0.998431161219273
Merged-chr2-27736632-2	chr2	27736532	27736732	+	665.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290482, intron 1 of 9)	intron (NM_001290482, intron 1 of 9)	26049.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-32712270-4	chr19	32712134	32712334	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026487)	promoter-TSS (NM_026487)	64.0	NM_026487	67979.0	Mm.27123	NM_026487	ENSMUSG00000013662	Atad1	4921525H23Rik|AW107648|Thorase	ATPase family, AAA domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-66834839-4	chr9	66834737	66834937	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026674)	promoter-TSS (NM_026674)	-131.0	NM_026674	68318.0	Mm.284229	NM_026674	ENSMUSG00000053040	Aph1c	0610008A10Rik|APH-1b|Aph1b	aph1 homolog C, gamma secretase subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-85343222-5	chr9	85343158	85343358	+	898.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16108.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	0.292954569463894	0.325029072365207	1.10069003078285	0.306624046008575	0.976339149670841	1.38725241971629	0.316999253303186	0.30804417090652	1.27272205981277	0.509196263310759	1
Merged-chr10-81111034-2	chr10	81110934	81111134	+	696.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023138, intron 2 of 10)	intron (NM_023138, intron 2 of 10)	5119.0	NM_001358539	26396.0	Mm.275436	NM_023138	ENSMUSG00000035027	Map2k2	AA589381|MEK2|MK2|Prkmk2	mitogen-activated protein kinase kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-112427627-4	chr13	112427528	112427728	+	986.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-36442.0	NM_010560	16195.0	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44820097-1	chr7	44819997	44820197	+	544.0	f1_c57bl6.idr	intron (NM_001171024, intron 1 of 8)	intron (NM_001171024, intron 1 of 8)	-3439.0	NR_033136	107503.0	Mm.389890	NM_030693	ENSMUSG00000038539	Atf5	AFTA|Atf7|Atfx|ODA-10	activating transcription factor 5	protein-coding	-2.05752322593321	-2.15521190974092	-2.16307242109104	-2.16952927915413	-2.17938029103484	-2.15350850414045	-2.16129297361887	-2.16837350464794	-0.683654500252594	0.846597994014493	1
Merged-chr7-25706500-4	chr7	25706416	25706616	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12537.0	NM_028771	52132.0	Mm.278798	NM_028771	ENSMUSG00000002608	Ccdc97	1200014H14Rik|2810446P04Rik|AA545218|D7Ertd462e	coiled-coil domain containing 97	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5755947-2	chr17	5755847	5756047	+	569.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42710.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-93506090-4	chr3	93505974	93506174	+	953.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14422.0	NM_016740	20195.0	Mm.280038	NM_016740	ENSMUSG00000027907	S100a11	EMAPI|Emap1|S100a14|S100c|cal	S100 calcium binding protein A11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-27113285-2	chr8	27113185	27113385	+	597.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_054044, intron 8 of 18)	intron (NM_054044, intron 8 of 18)	15347.0	NM_025686	66653.0	Mm.334467	NM_025686	ENSMUSG00000031487	Brf2	2700059M06Rik|5730512K07Rik|AU018504|AU022602|BRFU|TFIIIB50	BRF2, RNA polymerase III transcription initiation factor 50kDa subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-39737888-4	chr18	39737785	39737985	+	966.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35612.0	NM_011033	18459.0	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-69079523-4	chr17	69079418	69079618	+	963.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355732, intron 1 of 21)	intron (NM_001355732, intron 1 of 21)	3841.0	NM_001355732	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-70843242-2	chr9	70843142	70843342	+	923.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001324473, intron 1 of 8)	intron (NM_001324473, intron 1 of 8)	91566.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6346007-2	chr19	6345907	6346107	+	569.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_105955)	promoter-TSS (NR_105955)	-473.0	NR_105955	102465598.0		NR_105955	ENSMUSG00000099230	Mir6989	Gm27885|mmu-mir-6989	microRNA 6989	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31189983-2	chr14	31189883	31190083	+	846.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347583, intron 6 of 13)	B1_Mus1|SINE|Alu	16843.0	NM_022656	64652.0	Mm.298728	NM_022656	ENSMUSG00000021910	Nisch	1200007D05Rik|3202002H23Rik|AW494485|I-1|edsn	nischarin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78826765-4	chr15	78826666	78826866	+	910.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15881.0	NM_027219	104445.0	Mm.307488	NM_027219	ENSMUSG00000049521	Cdc42ep1	1810058K22Rik|AA980734|Borg5|CEP1|MSE55	CDC42 effector protein (Rho GTPase binding) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-44361938-2	chr10	44361838	44362038	+	953.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358596, intron 6 of 6)	intron (NM_001358596, intron 6 of 6)	2262.0	NR_035450	100316688.0		NR_035450	ENSMUSG00000089260	Mir1929	mir-1929|mmu-mir-1929	microRNA 1929	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-59177463-4	chr2	59177324	59177524	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 1 of 20)	intron (NM_175464, intron 1 of 20)	16574.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-102433943-2	chr11	102433843	102434043	+	946.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008175, exon 5 of 13)	exon (NM_008175, exon 5 of 13)	3621.0	NM_008175	14824.0	Mm.1568	NM_008175	ENSMUSG00000034708	Grn	Pgrn|epithelin	granulin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5599158-4	chr17	5599064	5599264	+	931.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	106564.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-79107893-4	chr2	79107781	79107981	+	861.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-147545.0	NM_010576	16401.0	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-54002901-2	chr11	54002801	54003001	+	929.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019687, intron 3 of 9)	intron (NM_019687, intron 3 of 9)	-22568.0	NM_019723	56517.0	Mm.154284	NM_019723	ENSMUSG00000063652	Slc22a21	Octn3|Slc22a9	solute carrier family 22 (organic cation transporter), member 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36192812-2	chr18	36192712	36192912	+	737.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001167891, intron 1 of 9)	intron (NM_001167891, intron 1 of 9)	4348.0	NM_001167891	100042150.0	Mm.380390	NM_001167891	ENSMUSG00000060275	Nrg2	Don1|NTAK	neuregulin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-73099374-2	chr10	73099274	73099474	+	563.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-12669.0	NR_040646	327768.0	Mm.417745	NR_040646	ENSMUSG00000111994	A330049N07Rik	-	RIKEN cDNA A330049N07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-154036961-4	chr1	154036854	154037054	+	931.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	137025.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72738381-2	chr6	72738281	72738481	+	716.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001079822, intron 3 of 12)	intron (NM_001079822, intron 3 of 12)	50664.0	NM_001079822	21415.0	Mm.440067	NM_009332	ENSMUSG00000055799	Tcf7l1	Tcf-3|Tcf3|bHLHb21	transcription factor 7 like 1 (T cell specific, HMG box)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27745291-2	chr2	27745191	27745391	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290481, intron 4 of 9)	intron (NM_001290481, intron 4 of 9)	34708.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-25493185-2	chr14	25493069	25493269	+	854.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	33984.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0.764542058590497	1.46282946900397	0.582645162676227	0.566299785119813	0.542226820226492	0.607560543924666	2.33049001193932	1.79816752127427	2.09596778223697	0.174430790976474	0.642663775706403
Merged-chr2-132271775-2	chr2	132271675	132271875	+	565.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291040, intron 1 of 3)	intron (NM_001291040, intron 1 of 3)	8627.0	NM_138651	110911.0	Mm.284503	NM_138651	ENSMUSG00000058793	Cds2	5730450N06Rik|5730460C18Rik|AI854580|D2Wsu127e	CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6850088-2	chr19	6849988	6850188	+	638.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081291, intron 16 of 26)	intron (NM_001081291, intron 16 of 26)	8123.0	NM_001081291	78317.0	Mm.329596	NM_198008	ENSMUSG00000047810	Ccdc88b	2610041P08Rik|Ccdc88	coiled-coil domain containing 88B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-86823977-2	chr6	86823877	86824077	+	826.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25463.0	NR_028298	67170.0	Mm.119489	NR_028298	ENSMUSG00000100164	2610306M01Rik	-	RIKEN cDNA 2610306M01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-29680923-2	chr4	29680823	29681023	+	550.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	612844.0	NR_151693	102634169.0		NR_151693		Gm11917	-	predicted gene 11917	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-53311203-6	chr19	53311124	53311324	+	990.888916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360348)	promoter-TSS (NM_001360348)	-221.0	NM_001360348	17859.0	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-144931696-1	chr7	144931596	144931796	+	580.0	f1_c57bl6.idr	TTS (NM_001347537)	TTS (NM_001347537)	8229.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-111030229-1	chr8	111030129	111030329	+	566.0	f0_c57.idr	intron (NM_001190786, intron 1 of 11)	B1_Mur1|SINE|Alu	1522.0	NM_001190786	234733.0	Mm.482176	NM_172284	ENSMUSG00000033658	Ddx19b	2810457M08Rik|4921519L13Rik|AW260119	DEAD (Asp-Glu-Ala-Asp) box polypeptide 19b	protein-coding	2.28115001034696	1.52385268535169	1.28948974043412	1.83607788967834	1.52111376383712	2.09199602007131	1.06791761327835	1.59611322294634	-0.521010446548131	0.644930481144071	0.983701068654072
Merged-chr1-20821171-2	chr1	20821071	20821271	+	593.833313	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008563)	promoter-TSS (NM_008563)	-859.0	NM_008563	17215.0	Mm.4502	NM_008563	ENSMUSG00000041859	Mcm3	AL033361|C80350|Mcmd|P1|P1-MCM3|p1.m	minichromosome maintenance complex component 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-34643363-4	chr4	34643272	34643472	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151507, intron 8 of 19)	intron (NR_151507, intron 8 of 19)	28415.0	NM_181406	109093.0	Mm.22363	NM_181406	ENSMUSG00000028292	Rars2	1500002I10Rik|PRO1992|Rarsl	arginyl-tRNA synthetase 2, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-109019731-4	chr8	109019615	109019815	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-55507.0	NR_126329	628686.0	Mm.203332	NR_126329	ENSMUSG00000097393	D030068K23Rik	-	RIKEN cDNA D030068K23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-105795854-4	chr1	105795757	105795957	+	858.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009399, intron 1 of 9)	intron (NM_009399, intron 1 of 9)	15134.0	NM_009399	21934.0	Mm.6251	NM_009399	ENSMUSG00000026321	Tnfrsf11a	Ly109|ODFR|OFE|Rank|TRANCE-R|mRANK	tumor necrosis factor receptor superfamily, member 11a, NFKB activator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-107202544-2	chr11	107202444	107202644	+	781.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-13163.0	NM_001161329	68979.0	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-137863756-1	chr4	137863656	137863856	+	561.0	f1_c57bl6.idr	intron (NM_199307, intron 1 of 19)	intron (NM_199307, intron 1 of 19)	1519.0	NM_199307	230857.0	Mm.401062	NM_199307	ENSMUSG00000057530	Ece1	AW322500|ECE-1|ECE-1a|ECE-1b|ECE-1d	endothelin converting enzyme 1	protein-coding	0.933427851329445	1.6207024914453	0.977394051759599	2.14356462906106	1.13810843735712	1.63346101424684	2.05529154018168	1.8875586766918	0.559589992835123	0.653578175960669	0.986782418856054
Merged-chr18-56924952-4	chr18	56924962	56925162	+	912.4285890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177115, intron 1 of 4)	CpG	486.0	NM_177115	320253.0	Mm.312623	NM_177115	ENSMUSG00000032656	March3	6330411I15Rik|A530081L18Rik|AI843639|MARCH-III	membrane-associated ring finger (C3HC4) 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-184733439-4	chr1	184733325	184733525	+	914.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008250)	promoter-TSS (NM_008250)	-932.0	NM_008250	15284.0	Mm.1347	NM_008250	ENSMUSG00000039377	Hlx	Hlx1	H2.0-like homeobox	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-67619705-2	chr16	67619605	67619805	+	665.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178721, intron 1 of 9)	intron (NM_178721, intron 1 of 9)	1203.0	NM_001347247	239857.0	Mm.394300	NM_178721	ENSMUSG00000064115	Cadm2	2900078E11Rik|9330131D06|A830029E02Rik|Igdf4d|Igsf4d|NECL3|SynCAM 2|SynCAM2	cell adhesion molecule 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71256976-2	chr17	71256865	71257065	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357338, intron 4 of 7)	intron (NM_001357338, intron 4 of 7)	52311.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	2.21993668685556	1.88475891184554	1.8121516513244	2.76584096536058	3.23828003567091	3.82851809881236	3.924904849728	3.53490768488474	2.49948969607384	0.000285241635035909	0.00708068097343621
Merged-chr2-145952929-3	chr2	145952833	145953033	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175280, intron 6 of 6)	intron (NM_175280, intron 6 of 6)	18149.0	NM_175280	78774.0	Mm.136347	NM_175280	ENSMUSG00000037143	Cfap61	4930529M08Rik|BB178539|BC024760	cilia and flagella associated protein 61	protein-coding	6.07398048395695	5.10267196157131	6.03195861761948	5.4268392870539	5.03484969404091	4.16347082357334	4.80823871355062	4.30185339782665	-1.26999299543591	0.000238193598694364	0.00616852706891225
Merged-chr10-67049466-4	chr10	67049366	67049566	+	909.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178606, intron 2 of 7)	intron (NM_178606, intron 2 of 7)	44391.0	NR_110511	102634101.0	Mm.445258	NR_110511	ENSMUSG00000112925	Gm31763	-	predicted gene, 31763	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-18392541-4	chr16	18392446	18392646	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001272032)	promoter-TSS (NM_001272032)	-17.0	NM_001272031	11877.0	Mm.293599	NM_033474	ENSMUSG00000000325	Arvcf	-	armadillo repeat gene deleted in velocardiofacial syndrome	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-92623808-1	chr16	92623708	92623908	+	571.0	f1_c57bl6.idr	intron (NM_001111022, intron 5 of 6)	intron (NM_001111022, intron 5 of 6)	73521.0	NM_001111023	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91688827-4	chr16	91688724	91688924	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021720)	promoter-TSS (NM_021720)	-74.0	NR_040389	100038392.0	Mm.440384	NR_040389	ENSMUSG00000085169	Gm10785	-	predicted gene 10785	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117447266-2	chr8	117447166	117447366	+	978.5625	f1_balb.idr|f1_c57bl6.idr	intron (NM_028941, intron 12 of 20)	intron (NM_028941, intron 12 of 20)	-5757.0	NR_106045	102466801.0		NR_106045	ENSMUSG00000099062	Mir7077	Gm27774|mmu-mir-7077	microRNA 7077	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-154791379-4	chr2	154791265	154791465	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001139511, exon 1 of 8)	5' UTR (NM_001139511, exon 1 of 8)	255.0	NM_001139511	19383.0	Mm.221440	NM_023130	ENSMUSG00000027593	Raly	AI663842|Merc	hnRNP-associated with lethal yellow	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-5102833-3	chr7	5102716	5102916	+	829.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14095.0	NM_001145013	192658.0	Mm.28764	NM_138954	ENSMUSG00000035191	Rfpl4	D7Ertd486e|Rfpl4a	ret finger protein-like 4	protein-coding	0.666346818393566	0.425947037806544	0.418983950302544	0.936857208220597	0.967146175451328	0.780468745691735	0.420519630953908	0.837068788196332	0.789639408750786	0.646183720411329	1
Merged-chr11-5502566-4	chr11	5502470	5502670	+	998.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-18071.0	NM_013842	22433.0	Mm.469937	NM_013842	ENSMUSG00000020484	Xbp1	D11Ertd39e|TREB-5|TREB5|XBP-1	X-box binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-36166189-2	chr17	36166089	36166289	+	556.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081032, intron 3 of 7)	intron (NM_001081032, intron 3 of 7)	2348.0	NM_001081032	667977.0	Mm.441651	NM_001081032	ENSMUSG00000073402	Gm8909	EG667977|H2-Tw5l|H2-gs17	predicted gene 8909	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-122070184-4	chr2	122070082	122070282	+	915.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145531, intron 26 of 39)	intron (NM_145531, intron 26 of 39)	41599.0	NM_001256055	100042807.0	Mm.329403	NM_001256055	ENSMUSG00000043424	Eif3j2	Eif3j-2|Gm9781|eIF3 p35|eIF3j-B	eukaryotic translation initiation factor 3, subunit J2	protein-coding	2.31464360904286	1.84970366495023	2.87717276678546	3.27773835833505	2.45749792457228	2.1043410494749	3.69169718956368	3.15388710133847	0.548626304923423	0.486494111818951	0.932503166794264
Merged-chr11-75195233-5	chr11	75195115	75195315	+	915.2999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177708, intron 1 of 1)	CpG	1222.0	NM_177708	237847.0	Mm.82661	NM_177708	ENSMUSG00000045287	Rtn4rl1	Ngr3|Ngrh2|Ngrl2	reticulon 4 receptor-like 1	protein-coding	0.372910955986996	0.410414818714274	1.58403440850962	0.598152442785844	0.375328793201645	1.4044724476381	0.627983663351004	0.60225143308578	-0.172586594057206	0.918153405612159	0.998431161219273
Merged-chr7-28797559-2	chr7	28797459	28797659	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358916, intron 10 of 11)	intron (NM_001358916, intron 10 of 11)	8590.0	NM_177158	320435.0	Mm.74632	NM_177158	ENSMUSG00000051735	Rinl	5830482F20Rik|9930116N10Rik	Ras and Rab interactor-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-60361762-2	chr10	60361662	60361862	+	569.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028732, intron 3 of 6)	intron (NM_028732, intron 3 of 6)	14911.0	NM_028732	74048.0	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45924171-4	chr7	45924084	45924284	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2758.0	NM_010129	13732.0	Mm.20829	NM_010129	ENSMUSG00000040212	Emp3	H-4|H4|HNMP-1|MI-35|Ymp	epithelial membrane protein 3	protein-coding	2.81547027209083	2.69002825937262	4.20013825327399	3.83936637585377	2.63556696320193	2.71160841408299	1.53590269629493	2.78157336867964	-1.76003425108454	0.0168130505170445	0.157596078205859
Merged-chr13-4934831-4	chr13	4934734	4934934	+	795.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-325670.0	NM_018859	56043.0	Mm.251908	NM_018859	ENSMUSG00000045410	Akr1e1	1810061I10Rik|Akr1e2	aldo-keto reductase family 1, member E1	protein-coding	2.60418199276207	1.63625730442072	2.71217808106537	3.26418129993152	3.12647883867918	2.82930037792398	3.5150130991348	3.05005162953785	0.837703808084831	0.249293800885579	0.747698903845194
Merged-chr13-117202984-3	chr13	117202893	117203093	+	746.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-17580.0	NM_010330	13723.0	Mm.274926	NM_010330	ENSMUSG00000021728	Emb	AL022799|Gp70	embigin	protein-coding	0.813169382284639	1.29722461918673	0.556258338138694	0.861110941598592	1.0345632723	0.566663498462008	0.89741227635906	0.866082087491934	-0.311997320743722	0.838153702775857	1
Merged-chr17-83735241-2	chr17	83735141	83735341	+	601.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_054082, intron 3 of 16)	B1_Mus1|SINE|Alu	29078.0	NM_001171052	116871.0	Mm.277668	NM_054082	ENSMUSG00000055817	Mta3	1110002J22Rik|mKIAA1266	metastasis associated 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-92458632-2	chr2	92458532	92458732	+	876.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_211358, intron 1 of 1)	intron (NM_211358, intron 1 of 1)	1162.0	NM_211358	228368.0	Mm.273990	NM_145832	ENSMUSG00000049922	Slc35c1	E430007K15Rik|fuct1	solute carrier family 35, member C1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-99244749-2	chr9	99244649	99244849	+	554.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023873, intron 1 of 17)	B4A|SINE|B4	1408.0	NM_023873	68121.0	Mm.288739	NM_023873	ENSMUSG00000056267	Cep70	6720484E09Rik|Bite|C030018L16Rik	centrosomal protein 70	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166154498-5	chr2	166154398	166154598	+	763.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355619, intron 1 of 21)	CpG	787.0	NM_001355619	72043.0	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-26602368-2	chr11	26602265	26602465	+	1000.0	f0_balb.idr|f0_c57.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-8445.0	NM_001252447	69922.0	Mm.285351	NM_027260	ENSMUSG00000064090	Vrk2	2810003O05Rik|AI447698	vaccinia related kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-17422749-3	chr10	17422659	17422859	+	808.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-300469.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-54438072-4	chr11	54437971	54438171	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173753)	promoter-TSS (NM_173753)	-108.0	NM_173753	216742.0	Mm.34087	NM_173753	ENSMUSG00000035992	Fnip1	A730024A03Rik|AI838773|AW557298	folliculin interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-62858661-4	chr5	62858555	62858755	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170705, intron 7 of 8)	intron (NM_001170705, intron 7 of 8)	44832.0	NM_001170705	100322896.0	Mm.479821	NM_001170705	ENSMUSG00000090326	Dthd1	Gm17384	death domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-50221117-3	chr6	50221032	50221232	+	666.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018769, intron 6 of 9)	intron (NM_018769, intron 6 of 9)	40637.0	NM_018769	54722.0	Mm.248361	NM_018769	ENSMUSG00000029821	Gsdme	2310037D07Rik|4932441K13Rik|Dfna5|Dfna5h|EG14210|Fin15	gasdermin E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-130708694-4	chr3	130708565	130708765	+	871.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025509, intron 1 of 3)	intron (NM_025509, intron 1 of 3)	779.0	NM_025509	66357.0	Mm.300697	NM_025509	ENSMUSG00000041084	Ostc	2310008M10Rik|5730557H03Rik	oligosaccharyltransferase complex subunit (non-catalytic)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128743897-4	chr10	128743818	128744018	+	871.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_016811, exon 1 of 24)	5' UTR (NM_016811, exon 1 of 24)	158.0	NM_016811	13139.0	Mm.291235	NM_016811	ENSMUSG00000025357	Dgka	80kDa|AW146112|Dagk1	diacylglycerol kinase, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-65073035-2	chr12	65072919	65073119	+	638.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_013902, intron 1 of 6)	PB1D10|SINE|Alu	919.0	NM_013902	30795.0	Mm.28480	NM_013902	ENSMUSG00000020949	Fkbp3	25kDa|FKBP-3|FKBP25	FK506 binding protein 3	protein-coding	-0.960356745253565	-0.944632716951783	-0.954778622669631	-0.429329592755357	-0.690970668601764	-0.942053516937827	-0.953840318496883	-0.956512928848077	-1.03243114258619	0.744669050894141	1
Merged-chr1-78489781-2	chr1	78489681	78489881	+	549.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_102757)	promoter-TSS (NR_102757)	-884.0	NM_011811	23874.0	Mm.17898	NM_011811	ENSMUSG00000026245	Farsb	C76708|Farsa|Farsl|Farslb|Frsb	phenylalanyl-tRNA synthetase, beta subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140737408-3	chr5	140737296	140737496	+	962.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173405, intron 2 of 7)	intron (NM_173405, intron 2 of 7)	13269.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-111119841-1	chr9	111119741	111119941	+	577.666687	f0_balb.idr	intron (NM_027742, intron 2 of 13)	intron (NM_027742, intron 2 of 13)	1730.0	NM_001164838	71268.0	Mm.302287	NM_027742	ENSMUSG00000032497	Lrrfip2	5133400F20Rik|AI850587	leucine rich repeat (in FLII) interacting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-44173343-4	chr4	44173237	44173437	+	817.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5054.0	NM_001038993	73469.0	Mm.262859	NM_175201	ENSMUSG00000035696	Rnf38	1700065B19Rik|2610202O07Rik|AA673263|Oip1	ring finger protein 38	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81166946-2	chr10	81166846	81167046	+	855.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_021501, intron 1 of 10)	intron (NM_021501, intron 1 of 10)	774.0	NM_021501	59004.0	Mm.34428	NM_021501	ENSMUSG00000004934	Pias4	PIASY|Pias-gamma|Piasg	protein inhibitor of activated STAT 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-77608800-3	chr10	77608700	77608900	+	978.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301671, intron 1 of 3)	intron (NM_001301671, intron 1 of 3)	2202.0	NM_001301671	20610.0	Mm.24433	NM_019929	ENSMUSG00000020265	Sumo3	2810014B19Rik|D10Ertd345e|SMT3A|SUMO-3|Smt3h1	small ubiquitin-like modifier 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-37531051-4	chr9	37530998	37531198	+	829.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_136939, intron 1 of 6)	intron (NR_136939, intron 1 of 6)	3009.0	NM_027102	69524.0	Mm.41751	NM_027102	ENSMUSG00000001946	Esam	2310008D05Rik|Esam1|W117m	endothelial cell-specific adhesion molecule	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-34957129-2	chr4	34957029	34957229	+	589.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178061, intron 3 of 3)	PB1D11|SINE|Alu	-45648.0	NR_040652	73696.0	Mm.1361	NR_040652	ENSMUSG00000085824	Platr9	2410114N07Rik	pluripotency associated transcript 9	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-135364562-4	chr6	135364434	135364634	+	948.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001288628, intron 1 of 5)	intron (NM_001288628, intron 1 of 5)	1603.0	NM_001288628	13730.0	Mm.182785	NM_010128	ENSMUSG00000030208	Emp1	I-8-09|TMP	epithelial membrane protein 1	protein-coding	3.52899592254276	3.37580334931389	4.12271395817862	4.00909154910294	4.46348991355292	4.35476251520177	4.49027072898724	5.26907962519824	1.18837948662062	0.00682912421826285	0.0838361177053728
Merged-chr9-106365846-1	chr9	106365746	106365946	+	583.0	f1_balb.idr	Intergenic	RMER15|LTR|ERVL	-2786.0	NM_153459	235584.0	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	1.0487241333808	0.637566727598765	1.59592501445584	0.615582915234336	1.45332440739608	1.48013785335096	0.627966075098376	0.617276360677203	0.277734159511836	0.864874843422158	0.998431161219273
Merged-chr9-121642136-4	chr9	121642036	121642236	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011703)	promoter-TSS (NM_011703)	-40.0	NM_001357346	69032.0	Mm.33351	NM_026915	ENSMUSG00000032530	Lyzl4	1810009N24Rik|AI504271|Lyc4|Lyza	lysozyme-like 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-84824509-2	chr11	84824409	84824609	+	646.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177564, intron 2 of 6)	URR1B|DNA|hAT-Charlie	4494.0	NM_177564	192970.0	Mm.192213	NM_177564	ENSMUSG00000034449	Dhrs11	-	dehydrogenase/reductase (SDR family) member 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-3485322-1	chr6	3485222	3485422	+	633.0	f1_c57bl6.idr	intron (NM_178899, intron 2 of 9)	intron (NM_178899, intron 2 of 9)	9176.0	NM_178899	101202.0	Mm.206911	NM_178899	ENSMUSG00000044156	Hepacam2	AI987662	HEPACAM family member 2	protein-coding	-0.472075384946382	-0.730951653393591	-0.920608588685081	-0.764500953831846	-0.925465893720833	-0.909763623154292	-0.920030331444187	-0.922274660076806	-2.84353162208339	0.319880629004171	1
Merged-chr8-47534974-2	chr8	47534874	47535074	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_203507, intron 1 of 6)	intron (NM_203507, intron 1 of 6)	1329.0	NM_203507	192174.0	Mm.273081	NM_203507	ENSMUSG00000031568	Rwdd4a	BC016198|Gm1942|Rwdd4	RWD domain containing 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141214750-2	chr4	141214650	141214850	+	779.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081174, intron 2 of 5)	intron (NM_001081174, intron 2 of 5)	794.0	NM_001081174	76166.0	Mm.271064	NM_001081174	ENSMUSG00000073733	Rsg1	6330545A04Rik|Gm723|b2b2804Clo|b2b2827Clo	REM2 and RAB-like small GTPase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133241571-7	chr4	133241381	133241581	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016693, intron 1 of 28)	CpG	663.0	NM_016693	53608.0	Mm.36640	NM_016693	ENSMUSG00000028862	Map3k6	Ask2|MAPKKK6|MEKK6	mitogen-activated protein kinase kinase kinase 6	protein-coding	4.59917569637759	5.31620714275598	4.64624517663086	4.52352387975377	4.87705143263054	4.82845418365028	5.26165395619052	4.95711767806196	0.228735695505369	0.504505005044108	0.940596350956057
Merged-chr11-18970049-4	chr11	18969949	18970149	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010789, intron 7 of 11)	intron (NM_010789, intron 7 of 11)	48920.0	NM_001193271	17268.0	Mm.356578	NM_010789	ENSMUSG00000020160	Meis1	C530044H18Rik|Evi8	Meis homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-148961098-4	chr3	148960988	148961188	+	996.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6453.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	3.58361622576184	3.86873870025466	2.75321623321267	3.02563253179379	3.49868081805559	3.44388672716554	3.13852172281044	2.81690578511445	-0.209942672984279	0.72682571632301	0.998431161219273
Merged-chr14-21744667-2	chr14	21744567	21744767	+	984.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001007268, intron 4 of 7)	intron (NM_001007268, intron 4 of 7)	-1788.0	NM_013849	27389.0	Mm.390674	NM_013849	ENSMUSG00000021768	Dusp13	DUSP13A|DUSP13B|Gm1203|LMW-DSP6|MDSP|TMDP|TS-DSP6	dual specificity phosphatase 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-82969579-4	chr6	82969462	82969662	+	961.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033079, intron 3 of 9)	L1MCa|LINE|L1	22640.0	NM_033079	110958.0	Mm.100652	NM_033079	ENSMUSG00000030041	M1ap	D6Mm5e	meiosis 1 associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-41463187-2	chr4	41463087	41463287	+	896.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_024241, intron 1 of 12)	MTB|LTR|ERVL-MaLR	1661.0	NM_024241	109242.0	Mm.370288	NM_024241	ENSMUSG00000028438	Kif24	4933425J19Rik|9430029L23Rik	kinesin family member 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120438713-2	chr8	120438613	120438813	+	605.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-50153.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-173018761-4	chr2	173018667	173018867	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3135.0	NM_019547	56190.0	Mm.485782	NM_019547	ENSMUSG00000027510	Rbm38	Rnpc1|Seb4|Seb4l	RNA binding motif protein 38	protein-coding	2.66061604532505	2.66678794581483	3.46138924517548	3.25149539360678	2.26583532072992	2.03229986631554	1.45850372761473	2.62506151621222	-1.77144866729923	0.0265099880577462	0.217953519906468
Merged-chr14-76193403-4	chr14	76193279	76193479	+	787.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-58083.0	NR_152108	72893.0	Mm.233565	NR_152108		2900040C04Rik	-	RIKEN cDNA 2900040C04 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91883123-2	chr2	91883023	91883223	+	590.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080754, intron 13 of 18)	B1_Mur2|SINE|Alu	-39066.0	NM_007699	12672.0	Mm.330405	NM_007699	ENSMUSG00000040495	Chrm4	Chrm-4|M4	cholinergic receptor, muscarinic 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-116338040-4	chr6	116337945	116338145	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302383)	promoter-TSS (NM_001302383)	23.0	NM_001302383	71779.0	Mm.27064	NM_027920	ENSMUSG00000025702	March8	1300017E09Rik|MARCH-VIII|Mir	membrane-associated ring finger (C3HC4) 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122176601-2	chr5	122176501	122176701	+	621.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18322.0	NM_013636	19047.0	Mm.280784	NM_013636	ENSMUSG00000004455	Ppp1cc	PP-1G|PP1|dis2m1	protein phosphatase 1, catalytic subunit, gamma isoform	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-67920114-1	chr14	67920014	67920214	+	618.0	f0_balb.idr	intron (NM_177780, intron 1 of 51)	intron (NM_177780, intron 1 of 51)	13458.0	NM_177780	68813.0	Mm.258155	NM_177780	ENSMUSG00000044447	Dock5	1110060D06Rik|AI666732|AI956923|BC016533|E130320D18|lr2|rlc	dedicator of cytokinesis 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117849188-4	chr11	117849098	117849298	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009689)	promoter-TSS (NM_009689)	-39.0	NM_001012273	11799.0	Mm.8552	NM_009689	ENSMUSG00000017716	Birc5	AAC-11|Api4|TIAP|survivin40	baculoviral IAP repeat-containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-60021776-4	chr2	60021682	60021882	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001182, intron 2 of 35)	intron (NM_001001182, intron 2 of 35)	103958.0	NM_001001182	407823.0	Mm.228071	NM_001001182	ENSMUSG00000026987	Baz2b	5830435C13Rik|BC053917|D2Ertd794e	bromodomain adjacent to zinc finger domain, 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-155770223-6	chr4	155770096	155770296	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_147776, exon 4 of 4)	3' UTR (NM_147776, exon 4 of 4)	4365.0	NM_147776	246228.0	Mm.26515	NM_147776	ENSMUSG00000042116	Vwa1	4932416A11Rik|WARP	von Willebrand factor A domain containing 1	protein-coding	0.986680596230668	0.214833034404919	0.206559453529846	0.543861065387478	1.21092620934419	0.216686083984226	0.208391826768782	0.201244589465182	0.134725708740509	0.947283993157845	1
Merged-chr4-34561170-2	chr4	34561070	34561270	+	665.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001007589, intron 1 of 4)	B3|SINE|B2	10555.0	NM_001007589	433693.0	Mm.389532	NM_026019	ENSMUSG00000028291	Akirin2	2700059D21Rik|AA114675|AA522011|AU019887|Akirin-2	akirin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-120197386-4	chr1	120197275	120197475	+	872.9249880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	67905.0	NM_133186	68428.0	Mm.181033	NM_133186	ENSMUSG00000026389	Steap3	1010001D01Rik|Tsap6|pHyde	STEAP family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-30604688-4	chr16	30604592	30604792	+	985.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4969.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-25681505-7	chr18	25681294	25681494	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362322, intron 1 of 12)	intron (NM_001362322, intron 1 of 12)	-1646.0	NM_001362337	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-75398894-4	chr1	75398795	75398995	+	972.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085370, intron 4 of 38)	intron (NM_001085370, intron 4 of 38)	-1190.0	NM_001173477	11790.0	Mm.275397	NM_007463	ENSMUSG00000026207	Speg	AW125581|Apeg1|BPEG|D1Bwg1450e|SPEGalpha|SPEGbeta|mKIAA1297	SPEG complex locus	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-25621499-3	chr18	25621405	25621605	+	776.200012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362322, intron 2 of 12)	intron (NM_001362322, intron 2 of 12)	58243.0	NM_001362337	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-95618566-4	chr13	95618474	95618674	+	951.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010169)	promoter-TSS (NM_010169)	-108.0	NM_010169	14062.0	Mm.24816	NM_010169	ENSMUSG00000048376	F2r	AI482343|Cf2r|Par1|ThrR	coagulation factor II (thrombin) receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126630134-4	chr7	126630013	126630213	+	828.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4643.0	NM_019738	56312.0	Mm.18742	NM_019738	ENSMUSG00000030717	Nupr1	2310032H04Rik|Com1|p8	nuclear protein transcription regulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-128746903-2	chr1	128746793	128746993	+	674.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-154594.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	2.06799566001324	1.94609897345625	1.75383336494698	1.41810616848499	1.50274700808617	1.06592453664399	1.04552545554969	2.20082484485253	-0.755256333858297	0.523443068735064	0.948187958023104
Merged-chr18-15195263-2	chr18	15195163	15195363	+	751.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43817.0	NM_134112	106931.0	Mm.329299	NM_134112	ENSMUSG00000036225	Kctd1	4933402K10Rik|AI661543|AW553000	potassium channel tetramerisation domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152519363-2	chr1	152519263	152519463	+	572.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 17 of 17)	intron (NM_016846, intron 17 of 17)	105854.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52643125-2	chr13	52643025	52643225	+	625.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_001198977, exon 13 of 14)	exon (NM_001198977, exon 13 of 14)	46243.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-139087033-2	chr4	139086902	139087102	+	706.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008675, intron 1 of 3)	intron (NM_008675, intron 1 of 3)	5968.0	NM_008675	17965.0	Mm.9404	NM_008675	ENSMUSG00000041120	Nbl1	D4H1S1733E|DAN|Dana|NO3	neuroblastoma, suppression of tumorigenicity 1	protein-coding	2.96720371046698	2.23123154062549	2.91835543655649	2.58578516856955	2.99240129871028	4.03499840148465	3.05190676567464	3.64059595064778	1.33065400932833	0.0395728252536698	0.283177787709859
Merged-chr10-120848344-2	chr10	120848244	120848444	+	604.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177092, intron 4 of 6)	intron (NM_177092, intron 4 of 6)	-9285.0	NR_038023	100504616.0	Mm.451174	NR_038023	ENSMUSG00000087480	Gm15910	-	predicted gene 15910	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69996285-4	chr11	69996190	69996390	+	870.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291126)	promoter-TSS (NM_001291126)	524.0	NM_030064	78246.0	Mm.20805	NM_030064	ENSMUSG00000018572	Phf23	JUNE-1	PHD finger protein 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-156471278-4	chr1	156471183	156471383	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009230, intron 1 of 15)	intron (NM_009230, intron 1 of 15)	3045.0	NM_009230	20652.0	Mm.28099	NM_009230	ENSMUSG00000026600	Soat1	8430426K15Rik|ACAT-1|AW550831|Acact|ald|hid	sterol O-acyltransferase 1	protein-coding	4.48022987231227	4.91945774945766	4.25928842984945	4.4029211118344	3.9138477183695	3.65460423412876	4.5035190374674	3.98126601472444	-0.634237990551134	0.128791259516375	0.561496196103731
Merged-chr7-141259715-2	chr7	141259615	141259815	+	593.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081118, exon 14 of 18)	exon (NM_001081118, exon 14 of 18)	6709.0	NM_001252601	54123.0	Mm.3233	NM_016850	ENSMUSG00000025498	Irf7	-	interferon regulatory factor 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84076285-2	chr8	84076185	84076385	+	918.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_009055, intron 2 of 20)	intron (NM_009055, intron 2 of 20)	9449.0	NM_009055	19724.0	Mm.7892	NM_009055	ENSMUSG00000031706	Rfx1	AI047719|AI385641	regulatory factor X, 1 (influences HLA class II expression)	protein-coding	1.85860950107087	2.53963365930222	2.61909211653751	1.95664290406974	1.87363714231136	1.29570063149508	1.8818742489061	2.09065542252004	-1.20668144113489	0.208993776654639	0.698371420334047
Merged-chr11-120011349-2	chr11	120011249	120011449	+	558.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001198785, exon 11 of 14)	exon (NM_001198785, exon 11 of 14)	-3418.0	NR_037225	100526518.0		NR_037225	ENSMUSG00000105524	Mir3065	mir-3065|mmu-mir-3065	microRNA 3065	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85490957-2	chr12	85490857	85491057	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17067.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-180920471-2	chr2	180920357	180920557	+	993.5	f0_c57.idr|f1_balb.idr	intron (NM_173761, intron 1 of 4)	CpG	479.0	NM_173761	228994.0	Mm.30205	NM_173761	ENSMUSG00000038848	Ythdf1	2210410K23Rik|8030473O16	YTH domain family 1	protein-coding	2.5643943618225	1.45344979585429	2.68950961307331	2.86292735838277	2.40627104924942	2.9872005087821	1.9009870340798	2.17005751959343	-0.145392032913569	0.86828913011594	0.998431161219273
Merged-chr14-77909092-4	chr14	77908989	77909189	+	909.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029495, intron 1 of 11)	MTD|LTR|ERVL-MaLR	4850.0	NM_029495	108670.0	Mm.68134	NM_029495	ENSMUSG00000022014	Epsti1	2310046K10Rik|5033415K03Rik|BRESI1	epithelial stromal interaction 1 (breast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-62466526-4	chr14	62466412	62466612	+	837.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10223.0	NM_172810	239134.0	Mm.236557	NM_172810	ENSMUSG00000021933	Gucy1b2	B930025B03|GC-SB2	guanylate cyclase 1, soluble, beta 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-65974215-2	chr5	65974115	65974315	+	807.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081104, intron 4 of 4)	intron (NM_001081104, intron 4 of 4)	7091.0	NM_001081104	231252.0	Mm.140015	NM_001081104	ENSMUSG00000029205	Chrna9	2410015I05Rik|Acra9|EG666827|Gm8311	cholinergic receptor, nicotinic, alpha polypeptide 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-118083207-4	chr10	118083103	118083303	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58584.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	7.96634003661851	7.74020315710213	7.61429392753692	7.66990402055985	8.1628573619581	8.08720607224886	8.11300384540039	8.43841407866012	0.465755930057737	0.000721632182604571	0.0149450108059085
Merged-chr5-115159329-1	chr5	115159229	115159429	+	718.0	f1_balb.idr	Intergenic	B3|SINE|B2	-1153.0	NM_175403	109154.0	Mm.153963	NM_175403	ENSMUSG00000048578	Mlec	2410014A08Rik|AI850530|ESTM19|X83352|mKIAA0152	malectin	protein-coding	2.16470415210871	1.3194073464601	1.0492738739741	2.21513129360506	2.03387174077317	1.5330251299883	1.05407208651163	1.85132705340707	-0.354098292092797	0.768084250813628	0.998431161219273
Merged-chr11-102438410-4	chr11	102438265	102438465	+	839.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_199200, exon 8 of 8)	exon (NM_199200, exon 8 of 8)	8043.0	NM_008175	14824.0	Mm.1568	NM_008175	ENSMUSG00000034708	Grn	Pgrn|epithelin	granulin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-45869545-2	chr1	45869445	45869645	+	589.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56049.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31136584-2	chr14	31136484	31136684	+	856.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_027289, intron 8 of 12)	intron (NM_027289, intron 8 of 12)	1731.0	NM_027289	70021.0	Mm.261681	NM_027289	ENSMUSG00000071547	Nt5dc2	2510015F01Rik	5'-nucleotidase domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-38542738-4	chr18	38542637	38542837	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58531.0	NM_011898	24066.0	Mm.42038	NM_011898	ENSMUSG00000024427	Spry4	A030006O18Rik|sprouty4	sprouty RTK signaling antagonist 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-93168196-4	chr10	93168102	93168302	+	997.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146239, intron 1 of 16)	intron (NM_146239, intron 1 of 16)	5417.0	NR_035452	100316689.0		NR_035452	ENSMUSG00000089214	Mir1931	mir-1931|mmu-mir-1931	microRNA 1931	ncRNA	3.8216581717978	2.38980199495256	4.07176320345456	3.96320613692719	3.95283919177537	3.57153786578651	2.52209827657996	4.5536666755538	0.193766406127017	0.754312144442935	0.998431161219273
Merged-chr18-4873220-4	chr18	4873133	4873333	+	981.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	60747.0	NR_045881	100038439.0	Mm.387569	NR_045881	ENSMUSG00000097043	Gm10556	-	predicted gene 10556	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-79810657-2	chr9	79810557	79810757	+	896.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	17016.0	NR_040734	74633.0	Mm.262175	NR_040734	ENSMUSG00000086918	4930429F24Rik	-	RIKEN cDNA 4930429F24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-144897293-2	chr4	144897193	144897393	+	905.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357274, intron 2 of 6)	intron (NM_001357274, intron 2 of 6)	4156.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-15986683-4	chr4	15986584	15986784	+	859.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013752, intron 13 of 15)	intron (NM_013752, intron 13 of 15)	27154.0	NM_001355615	209212.0	Mm.46455	NM_145950	ENSMUSG00000041153	Osgin2	BC010311|C230027H09Rik	oxidative stress induced growth inhibitor family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-21998155-3	chr16	21998071	21998271	+	805.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2629.0	NM_001289581	239759.0	Mm.33192	NM_153404	ENSMUSG00000044626	Liph	C130037N08Rik|D16Wsu119e|H06|Lpdlr|P3|PLA1B|lpd1|lpd2|mPA-PLA1	lipase, member H	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69091980-2	chr11	69091880	69092080	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009497, exon 5 of 5)	3' UTR (NM_009497, exon 5 of 5)	3452.0	NM_009497	22318.0	Mm.28643	NM_009497	ENSMUSG00000020894	Vamp2	Syb-2|Syb2|Vamp-2|sybII	vesicle-associated membrane protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-156050036-2	chr4	156049936	156050136	+	560.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029264, intron 2 of 14)	intron (NM_029264, intron 2 of 14)	781.0	NM_029264	330010.0	Mm.440232	NM_029264	ENSMUSG00000029074	Ttll10	4833412E22Rik|4930595O22Rik|AU022799|BC042775|Ttll5	tubulin tyrosine ligase-like family, member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166200879-2	chr2	166200779	166200979	+	833.916626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45196.0	NM_028072	72043.0	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-157139502-3	chr1	157139368	157139568	+	877.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177644, exon 18 of 18)	3' UTR (NM_177644, exon 18 of 18)	-30788.0	NM_001305063	73435.0	Mm.116705	NM_028540	ENSMUSG00000026592	Tex35	1700057K13Rik	testis expressed 35	protein-coding	0.631029975784588	0.483699561572808	0.308201826998662	0.304381375086942	0.638978148383099	0.63666418914655	0.309299668995089	0.868343569978211	1.42326542581394	0.437242995235182	1
Merged-chr10-61492269-4	chr10	61492183	61492383	+	952.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153542, intron 2 of 4)	intron (NM_153542, intron 2 of 4)	16450.0	NM_153542	216011.0	Mm.136116	NM_153542	ENSMUSG00000037151	Lrrc20	BC036304	leucine rich repeat containing 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-20882319-4	chr5	20882227	20882427	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177601)	promoter-TSS (NM_177601)	-126.0	NM_177601	212090.0	Mm.347525	NM_177601	ENSMUSG00000045435	Tmem60	BC027828	transmembrane protein 60	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141576319-2	chr7	141576219	141576419	+	763.299988	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357068, intron 1 of 21)	intron (NM_001357068, intron 1 of 21)	14139.0	NM_007459	11772.0	Mm.253090	NM_007459	ENSMUSG00000002957	Ap2a2	2410074K14Rik|AF006990|AW146353|Adtab|C78001|L25	adaptor-related protein complex 2, alpha 2 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-33074283-2	chr13	33074186	33074386	+	852.583374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9817.0	NM_173052	282663.0	Mm.314490	NM_173052	ENSMUSG00000051029	Serpinb1b	6330533H24Rik|EIB|Serpin1b1|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 1b	protein-coding	-0.498981902373153	-0.744388551262053	-0.747320326093482	-0.237620288339165	-0.613281599263441	-0.743725836975061	-0.746674860146477	-0.749180059260959	-2.14508674055068	0.4388104754781	1
Merged-chr11-86746253-4	chr11	86746131	86746331	+	992.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003908, intron 1 of 31)	intron (NM_001003908, intron 1 of 31)	11336.0	NM_001003908	67300.0	Mm.254588	NM_001003908	ENSMUSG00000047126	Cltc	3110065L21Rik|CHC|R74732	clathrin, heavy polypeptide (Hc)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-32304439-1	chr4	32304339	32304539	+	627.0	f0_balb.idr	Intergenic	Intergenic	-112996.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-80209023-4	chr11	80208914	80209114	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021536)	promoter-TSS (NM_021536)	-41.0	NM_001163354	59040.0	Mm.489674	NM_021536	ENSMUSG00000017686	Rhot1	2210403N23Rik|AA415293|AF244542|AI834919|Arht1|C430039G08Rik|Miro1	ras homolog family member T1	protein-coding	6.24162274143751	5.4582787682877	6.29351601085124	5.90410942985485	5.528587955725	5.49363079875986	6.28085822078881	6.07842643909164	-0.144677811117784	0.599712128586489	0.972644048358371
Merged-chr11-69422596-2	chr11	69422496	69422696	+	788.333374	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081330, exon 82 of 86)	exon (NM_001081330, exon 82 of 86)	-8921.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-102292216-2	chr11	102292116	102292316	+	576.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001098836, intron 10 of 12)	intron (NM_001098836, intron 10 of 12)	4413.0	NM_001098836	217218.0	Mm.390381	NM_001098836	ENSMUSG00000059995	Atxn7l3	E030022H21Rik	ataxin 7-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-88025398-2	chr17	88025298	88025498	+	785.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081034, intron 1 of 22)	intron (NM_001081034, intron 1 of 22)	39534.0	NM_001348248	225055.0	Mm.386857	NM_001081034	ENSMUSG00000005371	Fbxo11	C80048|Jf	F-box protein 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-146303667-3	chr5	146303571	146303771	+	639.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001359990)	TTS (NM_001359990)	72421.0	NM_153599	264064.0	Mm.260576	NM_153599	ENSMUSG00000029635	Cdk8	-	cyclin-dependent kinase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-103320422-4	chr11	103320342	103320542	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24260.0	NM_133715	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	4.17082887592132	4.38609661446936	3.40382899563741	3.91947498015964	3.87020707182954	4.12335290726296	3.52850262619056	3.41788664548418	-0.361598114187647	0.455712766877268	0.919264728457769
Merged-chr14-26971659-4	chr14	26971551	26971751	+	910.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1100.0	NM_145221	72993.0	Mm.202322	NM_145221	ENSMUSG00000040760	Appl1	2900057D21Rik|7330406P05Rik|AI585782|AW209077|BB022931|C88264|DIP13	adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-31315829-4	chr15	31315739	31315939	+	968.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357922, intron 1 of 2)	intron (NM_001357922, intron 1 of 2)	51920.0	NM_001357923	67434.0	Mm.102470	NM_026153	ENSMUSG00000022237	Ankrd33b	0610012A05Rik|3021401C12Rik|5730557B15Rik	ankyrin repeat domain 33B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-114562804-8	chr7	114562710	114562910	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177382, exon 1 of 5)	exon (NM_177382, exon 1 of 5)	162.0	NR_110407	244209.0	Mm.108037	NM_177382	ENSMUSG00000030670	Cyp2r1	-	cytochrome P450, family 2, subfamily r, polypeptide 1	protein-coding	3.26880109076468	2.31419763837286	2.53530792399694	2.5854723287721	3.12367921058922	2.33088474916618	3.15880809511232	2.47711659297398	0.171661496034664	0.81492679931121	0.998431161219273
Merged-chr19-5802580-4	chr19	5802480	5802680	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_002847)	promoter-TSS (NR_002847)	92.0	NR_002847	72289.0	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-95839704-4	chr16	95839618	95839818	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040485, intron 3 of 3)	MLT1A1|LTR|ERVL-MaLR	58995.0	NR_040485	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119507648-1	chr11	119507548	119507748	+	567.0	f1_balb.idr	3' UTR (NM_177394, exon 8 of 8)	3' UTR (NM_177394, exon 8 of 8)	16028.0	NM_177394	338371.0	Mm.271946	NM_177394	ENSMUSG00000039850	Endov	A730011L01Rik	endonuclease V	protein-coding	0.400708810343154	-0.252368337554583	-0.257438558843195	-0.261361041042553	-0.266920532314154	-0.251227532908617	-0.256318961999385	0.494416719864219	0.268596084744395	0.916752121297152	1
Merged-chr13-51313724-2	chr13	51313624	51313824	+	631.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-94894.0	NM_010101	13610.0	Mm.136736	NM_010101	ENSMUSG00000067586	S1pr3	AI132464|Edg3|Lpb3|S1p3	sphingosine-1-phosphate receptor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-85879287-4	chr15	85879195	85879395	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028063)	promoter-TSS (NM_028063)	-32.0	NM_028063	72026.0	Mm.158211	NM_028063	ENSMUSG00000022386	Trmu	1110005N20Rik|1600025P05Rik|AI314320|Trmt1	tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-22802506-2	chr14	22802406	22802606	+	828.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028275, intron 5 of 6)	intron (NM_028275, intron 5 of 6)	-259708.0	NR_046307	74896.0	Mm.444661	NR_046307	ENSMUSG00000114412	4930405A10Rik	4930456G20Rik	RIKEN cDNA 4930405A10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-180115876-4	chr2	180115773	180115973	+	996.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3493.0	NM_144500	228983.0	Mm.253578	NM_144500	ENSMUSG00000039050	Osbpl2	C130070J12Rik|ORP-2|Orp2|mKIAA0772	oxysterol binding protein-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-7785785-4	chr9	7785703	7785903	+	972.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152989, intron 3 of 5)	intron (NR_152989, intron 3 of 5)	1413.0	NR_049191	100885830.0		NR_049191	ENSMUSG00000093615	Mir5618	Gm23685|mmu-mir-5618	microRNA 5618	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-84438208-4	chr10	84438114	84438314	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004363, intron 1 of 6)	intron (NM_001004363, intron 1 of 6)	2257.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-136894477-4	chr7	136894381	136894581	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008598)	promoter-TSS (NM_008598)	-130.0	NM_008598	17314.0	Mm.440219	NM_008598	ENSMUSG00000054612	Mgmt	AGT|AI267024|Agat	O-6-methylguanine-DNA methyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-32978675-1	chr19	32978575	32978775	+	561.0	f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-178437.0	NR_039552	100628575.0		NR_039552	ENSMUSG00000106278	Mir3970	mmu-mir-3970|mu-mir-3970	microRNA 3970	ncRNA	-0.182756035124958	0.190198617206426	-0.172618967021318	0.545685682765848	-0.181814365192015	0.197662387021716	-0.171530333400521	-0.175762603249659	-1.89156299270789	0.430328640689943	1
Merged-chr2-83615761-2	chr2	83615661	83615861	+	580.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	-28817.0	NM_026934	69082.0	Mm.27804	NM_026934	ENSMUSG00000027091	Zc3h15	1700006A17Rik|1810012H02Rik|2610312B22Rik|FM22|Ierepo4	zinc finger CCCH-type containing 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-43353843-4	chr11	43353757	43353957	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20604.0	NR_029558	387164.0		NR_029558	ENSMUSG00000065601	Mir146	Mirn146|miR-146a|mmu-mir-146	microRNA 146	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-30051187-2	chr6	30051087	30051287	+	738.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164226, intron 1 of 11)	B3|SINE|B2	3199.0	NM_001164227	18181.0	Mm.259258	NM_010938	ENSMUSG00000058440	Nrf1	C87038|D6Ertd415e	nuclear respiratory factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-39650936-4	chr1	39650820	39651020	+	968.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_170597, exon 1 of 4)	exon (NM_170597, exon 1 of 4)	262.0	NM_170597	263764.0	Mm.122091	NM_170597	ENSMUSG00000050967	Creg2	A830098L22Rik	cellular repressor of E1A-stimulated genes 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-113134033-1	chr7	113133933	113134133	+	570.0	f0_balb.idr	intron (NR_045978, intron 2 of 5)	intron (NR_045978, intron 2 of 5)	7982.0	NR_045978	75239.0	Mm.381688	NR_045978	ENSMUSG00000110009	4930543E12Rik	4930545H14Rik	RIKEN cDNA 4930543E12 gene	ncRNA	-0.0389424665835452	0.00257983267204426	-0.010517275112065	-0.0209463513610635	-0.0362082913887853	0.0054702035032686	0.812200706933578	1.74615624052616	4.77387584617869	0.160195579128588	0.62016942789409
Merged-chr17-47738555-5	chr17	47738550	47738750	+	865.56665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161723, intron 1 of 8)	intron (NM_001161723, intron 1 of 8)	719.0	NM_001161723	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-58686805-4	chr7	58686697	58686897	+	969.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009728, intron 1 of 20)	MTD|LTR|ERVL-MaLR	28595.0	NM_009728	11982.0	Mm.135129	NM_009728	ENSMUSG00000025324	Atp10a	Atp10c|pfatp	ATPase, class V, type 10A	protein-coding	1.48036801832072	1.67234648631837	3.07235508419316	2.7469666707871	1.80433104633073	1.68542150548557	1.13159443347818	1.7515106190676	-1.96543261213198	0.0564319826049842	0.350813951966114
Merged-chr3-84480432-3	chr3	84480316	84480516	+	748.233337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001205355)	promoter-TSS (NM_001205355)	23.0	NM_001033301	229474.0	Mm.331107	NM_001033301	ENSMUSG00000041842	Fhdc1	6330505N24Rik|Gm126	FH2 domain containing 1	protein-coding	-0.830497771553722	-1.06295710102748	-1.07364806252224	-1.07942217809857	-0.824540885624342	-1.06064032507315	-0.905139258440146	-1.07911592823587	0.59745655489768	0.845447175348831	1
Merged-chr2-27764345-5	chr2	27764248	27764448	+	989.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53765.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-35018532-3	chr4	35018444	35018644	+	671.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178061, intron 2 of 3)	B1_Mur2|SINE|Alu	-107063.0	NR_040652	73696.0	Mm.1361	NR_040652	ENSMUSG00000085824	Platr9	2410114N07Rik	pluripotency associated transcript 9	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-121377132-4	chr10	121377048	121377248	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029364, intron 5 of 13)	intron (NM_029364, intron 5 of 13)	12058.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	2.29383467033837	2.96328359842526	3.233273954362	2.78626879193836	3.21969158251664	2.98464449513765	2.88753610891304	2.99512404339663	0.313493867921598	0.634220562269633	0.982417279970648
Merged-chr9-108080333-2	chr9	108080233	108080433	+	824.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008243)	promoter-TSS (NM_008243)	-103.0	NM_008243	15235.0	Mm.8369	NM_008243	ENSMUSG00000032591	Mst1	D3F15S2h|D9H3F15S2|DNF15S2h|Hgfl	macrophage stimulating 1 (hepatocyte growth factor-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123973636-3	chr5	123973543	123973743	+	719.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145070)	promoter-TSS (NM_145070)	15.0	NM_145070	29816.0	Mm.149954	NM_145070	ENSMUSG00000000915	Hip1r	AA410023|mKIAA0655	huntingtin interacting protein 1 related	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44253314-2	chr7	44253214	44253414	+	544.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_025880)	TTS (NM_025880)	3164.0	NR_028533	100217433.0		NR_028533	ENSMUSG00000095472	Snord88a	MBII-211	small nucleolar RNA, C/D box 88A	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27635332-4	chr17	27635222	27635422	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025963)	promoter-TSS (NM_025963)	-80.0	NM_025963	67097.0	Mm.275810	NM_025963	ENSMUSG00000052146	Rps10	2210402A09Rik	ribosomal protein S10	protein-coding	5.64980236587569	4.84538578449814	4.58967815558593	5.41038932731125	5.42706721464311	5.65251502588873	4.95310751478362	5.0417705425421	0.111405559161732	0.740086237122037	0.998431161219273
Merged-chr1-74372465-2	chr1	74372365	74372565	+	881.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-2738.0	NM_013612	18173.0	Mm.2913	NM_013612	ENSMUSG00000026177	Slc11a1	Bcg|Ity|Ity1|Lsh|Nramp|Nramp1|ity	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-100678742-4	chr15	100678650	100678850	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033612, intron 6 of 7)	intron (NM_033612, intron 6 of 7)	9170.0	NM_033612	109901.0	Mm.2131	NM_033612	ENSMUSG00000023031	Cela1	1810009A17Rik|1810062B19Rik|Ela-1|Ela1|PC-TsF	chymotrypsin-like elastase family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-20740614-4	chr11	20740506	20740706	+	958.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181411, intron 1 of 8)	intron (NM_181411, intron 1 of 8)	950.0	NM_001290545	216549.0	Mm.356580	NM_181411	ENSMUSG00000049659	Aftph	-	aftiphilin	protein-coding	-1.36065019082248	-1.47891690628011	-1.48864200592577	-1.49663049233137	-1.50881825822641	-1.32378922160346	-1.33342024151989	-1.49520055708416	0.883586364496874	0.783241025044169	1
Merged-chr7-81864162-2	chr7	81864102	81864302	+	572.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291282, intron 2 of 9)	intron (NM_001291282, intron 2 of 9)	1515.0	NM_001291282	107769.0	Mm.221412	NM_145375	ENSMUSG00000038623	Tm6sf1	AI428514|BC023123|C630016D09Rik	transmembrane 6 superfamily member 1	protein-coding	-0.792850727670398	-0.917582688271705	-0.926263467500238	-0.408356686332177	-0.789160138014327	-0.915009389859582	-0.925671412394738	-0.927969865833305	-1.91422077851553	0.508229283169218	1
Merged-chr2-91193810-2	chr2	91193710	91193910	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355279, intron 1 of 9)	intron (NM_001355279, intron 1 of 9)	1225.0	NM_013839	22259.0	Mm.22690	NM_013839	ENSMUSG00000002108	Nr1h3	AU018371|LXR|RLD1|Unr1	nuclear receptor subfamily 1, group H, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-83947673-4	chr3	83947579	83947779	+	962.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172681, intron 7 of 34)	intron (NM_172681, intron 7 of 34)	92482.0	NM_172681	229473.0	Mm.28838	NM_172681	ENSMUSG00000033767	Tmem131l	D930015E06Rik|Kiaa0922|mKIAA0922	transmembrane 131 like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-12728568-2	chr10	12728468	12728668	+	602.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011682, intron 14 of 73)	intron (NM_011682, intron 14 of 73)	133167.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-71103486-3	chr2	71103384	71103584	+	883.3666380000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14570.0	NM_028593	73649.0	Mm.45435	NM_028593	ENSMUSG00000027015	Cybrd1	2210407P13Rik|Dcytb	cytochrome b reductase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-124327328-1	chr10	124327228	124327428	+	579.0	f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-141746.0	NR_028310	75030.0	Mm.159403	NR_028310	ENSMUSG00000112364	4930503E24Rik	-	eukaryotic translation initiation factor 3, subunit I pseudogene	pseudo	-0.0623833550397832	-0.372884932430855	0.85866409625201	-0.384601453963822	-0.3919717808076	-0.371416054311535	-0.378001714183627	-0.383698954347525	-4.02270962330494	0.0960915854705732	1
Merged-chr2-160026048-3	chr2	160025942	160026142	+	712.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040499, intron 2 of 3)	intron (NR_040499, intron 2 of 3)	9389.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	-0.335150255279636	0.10272676644875	-0.321712015386238	-0.326721185741396	-0.333887160134939	-0.313856653269454	-0.320289171523172	0.835318914923815	2.18921789203891	0.383306957513815	1
Merged-chr1-151615842-4	chr1	151615735	151615935	+	876.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022018, intron 1 of 13)	intron (NM_022018, intron 1 of 13)	44462.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53134271-4	chr4	53134175	53134375	+	915.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 2 of 49)	intron (NM_013454, intron 2 of 49)	25620.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-60186208-1	chr11	60186108	60186308	+	571.0	f0_balb.idr	exon (NM_009021, exon 3 of 6)	exon (NM_009021, exon 3 of 6)	14409.0	NR_105886	102465555.0		NR_105886	ENSMUSG00000098547	Mir6921	Gm27352|mmu-mir-6921	microRNA 6921	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5189866-4	chr17	5189760	5189960	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 4 of 19)	CpG	194786.0	NM_001085355	239985.0	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-73964458-4	chr12	73964343	73964543	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178392)	promoter-TSS (NM_178392)	-87.0	NM_178392	75627.0	Mm.25937	NM_178392	ENSMUSG00000021113	Snapc1	2700033G17Rik|AU015787	small nuclear RNA activating complex, polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-131554016-3	chr7	131553927	131554127	+	866.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145998)	promoter-TSS (NM_145998)	-35.0	NM_145998	15372.0	Mm.303357	NM_145998	ENSMUSG00000050100	Hmx2	Nkx-5.2|Nkx5-2	H6 homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-7589818-4	chr10	7589725	7589925	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359742)	promoter-TSS (NM_001359742)	25.0	NM_001359743	237253.0	Mm.206759	NM_172784	ENSMUSG00000019796	Lrp11	1700034J19Rik|6330533B21|9830160H19Rik	low density lipoprotein receptor-related protein 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123831994-4	chr5	123831914	123832114	+	830.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33502.0	NM_030701	80885.0	Mm.440567	NM_030701	ENSMUSG00000045502	Hcar2	Gpr109a|Gpr109b|HM74|Niacr1|PUMA-G|Pumag|mHM74b	hydroxycarboxylic acid receptor 2	protein-coding	3.27637085810632	3.91519918494438	4.58899475059542	4.54160669466714	2.31725637774714	1.67179689702849	2.1557577565539	3.5577339138966	-2.32175330992044	0.000581712339121117	0.0126591015322403
Merged-chr8-105609820-2	chr8	105609720	105609920	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081241, intron 1 of 21)	L2|LINE|L2	4591.0	NM_001081241	75687.0	Mm.41261	NM_001081241	ENSMUSG00000038604	Ripor1	2310066E14Rik|AI837433|Fam65a	RHO family interacting cell polarization regulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-17827023-4	chr17	17827007	17827207	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-3081.0	NR_029536	387230.0		NR_029536	ENSMUSG00000065396	Mir99b	Mirn99b|mmu-mir-99b	microRNA 99b	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133412041-2	chr4	133411941	133412141	+	615.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_016981, exon 2 of 12)	exon (NM_016981, exon 2 of 12)	42265.0	NR_039582	100628620.0		NR_039582	ENSMUSG00000092745	Mir5122	mmu-mir-5122|mu-mir-5122	microRNA 5122	ncRNA	1.28785249796337	0.641596870422086	0.632012906585754	1.07264201847432	1.2164048749021	1.1660684295731	0.634132739391722	1.07908838985144	0.453045772406719	0.772025705815167	0.998431161219273
Merged-chr1-182124725-4	chr1	182124652	182124852	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_012058)	promoter-TSS (NM_012058)	15.0	NM_012058	27058.0	Mm.273196	NM_012058	ENSMUSG00000026511	Srp9	9kDa	signal recognition particle 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-73323422-2	chr11	73323322	73323522	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023113, intron 1 of 5)	intron (NM_023113, intron 1 of 5)	1215.0	NM_023113	11484.0	Mm.293574	NM_023113	ENSMUSG00000020774	Aspa	Acy-2|Acy2|nur7	aspartoacylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-59220187-3	chr3	59220089	59220289	+	855.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357007, intron 1 of 2)	intron (NM_001357007, intron 1 of 2)	-9307.0	NM_028808	74191.0	Mm.90067	NM_028808	ENSMUSG00000036362	P2ry13	2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174	purinergic receptor P2Y, G-protein coupled 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-66814163-4	chr15	66814074	66814274	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009192, intron 1 of 8)	intron (NM_009192, intron 1 of 8)	17655.0	NM_001029841	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-108710922-4	chr9	108710810	108711010	+	953.133301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008924, intron 1 of 10)	intron (NM_008924, intron 1 of 10)	18767.0	NM_008924	19087.0	Mm.253102	NM_008924	ENSMUSG00000032601	Prkar2a	1110061A24Rik|AI317181|AI836829|RII(alpha)	protein kinase, cAMP dependent regulatory, type II alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-40846776-4	chr4	40846701	40846901	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022305, intron 1 of 5)	MTD|LTR|ERVL-MaLR	3337.0	NR_039584	100628614.0		NR_039584	ENSMUSG00000096377	Mir5123	mmu-mir-5123|mu-mir-5123	microRNA 5123	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-44422175-2	chr15	44422075	44422275	+	615.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113554, intron 1 of 9)	B3|SINE|B2	-5936.0	NM_175009	223527.0	Mm.291828	NM_175009	ENSMUSG00000022338	Eny2	1810057B09Rik|6720481I12|DC6|Ey2	ENY2 transcription and export complex 2 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-105843276-2	chr10	105843176	105843376	+	558.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025602, intron 2 of 3)	intron (NM_025602, intron 2 of 3)	1797.0	NM_025602	52713.0	Mm.339224	NM_025602	ENSMUSG00000019897	Ccdc59	2300004H16Rik|D10Ertd718e	coiled-coil domain containing 59	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-121955375-4	chr2	121955279	121955479	+	901.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290992)	promoter-TSS (NM_001290992)	-622.0	NM_001290992	329506.0	Mm.249405	NM_212450	ENSMUSG00000033411	Ctdspl2	D2Ertd485e|SCP4	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2	protein-coding	-0.998708004169574	-1.23656917697027	-1.2467819647641	-1.2551710527351	-1.26296550373295	-1.23435602325169	-0.926385977887582	-1.25366940999922	0.276530546718458	0.935641945642945	1
Merged-chr2-26931088-2	chr2	26931025	26931225	+	589.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_011512, intron 1 of 5)	intron (NM_011512, intron 1 of 5)	2386.0	NM_011512	20932.0	Mm.300594	NM_011512	ENSMUSG00000014867	Surf4	AL033340|AL033373|Surf-4	surfeit gene 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-117091006-1	chr7	117090906	117091106	+	940.0	f1_c57bl6.idr	Intergenic	Intergenic	-289973.0	NM_175645	233781.0	Mm.461427	NM_175645	ENSMUSG00000030657	Xylt1	8030490L12	xylosyltransferase 1	protein-coding	1.30773379360296	2.08880801367356	1.57526766858807	0.820987055533686	1.31988218876369	0.859889294567148	2.10978434382594	0.823693298394813	-0.386679844189391	0.777400349899237	0.998431161219273
Merged-chr13-92027912-2	chr13	92027812	92028012	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39870.0	NM_009027	19418.0	Mm.248630	NM_009027	ENSMUSG00000021708	Rasgrf2	6330417G04Rik|AW048350|Grf2|Ras-GRF2	RAS protein-specific guanine nucleotide-releasing factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-23687417-4	chr19	23687339	23687539	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028208)	promoter-TSS (NM_028208)	39.0	NM_028208	72351.0	Mm.474795	NM_028208	ENSMUSG00000074925	Ptar1	1700084D09Rik|2010013L17Rik|4930428J16Rik|AI449677	protein prenyltransferase alpha subunit repeat containing 1	protein-coding	5.03669302562069	5.11265422166088	4.73719479180527	4.16714668819157	5.74037114990038	5.81100099607325	5.49473940342197	5.37932252128679	0.941050130103978	0.00265323896101365	0.0414499492893772
Merged-chr13-12896823-2	chr13	12896723	12896923	+	723.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	-96744.0	NM_011118	18812.0	Mm.457984	NM_011118	ENSMUSG00000056457	Prl2c3	Ghd1|MRP-2|MRP-3|Mrpplf3|PLF-2|PLF-3|Plf2|Prl2c4|mrp/plf3	prolactin family 2, subfamily c, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-19444258-2	chr6	19444159	19444359	+	650.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3A|LINE|L1	-111083.0	NR_105789	102465192.0		NR_105789	ENSMUSG00000099149	Mir6370	Gm27480|mmu-mir-6370	microRNA 6370	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-24603319-2	chr12	24603219	24603419	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145890, intron 7 of 13)	intron (NM_145890, intron 7 of 13)	22600.0	NM_145890	195733.0	Mm.263068	NM_145890	ENSMUSG00000020656	Grhl1	LBP-32|MGR|Tcfcp2l2	grainyhead like transcription factor 1	protein-coding	1.68789924285286	1.80900324635597	1.74089231024824	1.78949464366702	0.892887142675365	0.948391963883438	1.75612746556541	0.915463141639008	-2.0350033186785	0.122782692980368	0.549408285819912
Merged-chr9-23597947-4	chr9	23597821	23598021	+	988.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	374845.0	NM_028472	73230.0	Mm.335020	NM_028472	ENSMUSG00000031963	Bmper	3110056H04Rik|CV-2|Crim3|Cv2	BMP-binding endothelial regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-79224892-4	chr15	79224797	79224997	+	945.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4276.0	NM_008837	18693.0	Mm.259464	NM_008837	ENSMUSG00000068206	Pick1	Prkcabp	protein interacting with C kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-27236996-4	chr3	27236874	27237074	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 3 of 4)	MTC|LTR|ERVL-MaLR	53970.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55788329-4	chr14	55788254	55788454	+	966.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_019955, exon 2 of 10)	exon (NM_019955, exon 2 of 10)	503.0	NM_001164107	56532.0	Mm.46612	NM_019955	ENSMUSG00000022221	Ripk3	2610528K09Rik|AW107945|Rip3	receptor-interacting serine-threonine kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-53534108-3	chr19	53534058	53534258	+	662.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085390, intron 2 of 3)	intron (NM_001085390, intron 2 of 3)	4840.0	NM_001085390	240672.0	Mm.482424	NM_001085390	ENSMUSG00000034765	Dusp5	Gm337	dual specificity phosphatase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-42136792-1	chr15	42136692	42136892	+	562.0	f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	-267072.0	NM_175456	223513.0	Mm.148913	NM_175456	ENSMUSG00000042895	Abra	C130068O12Rik|STARS	actin-binding Rho activating protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-121262960-3	chr3	121262770	121262970	+	947.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001355678, exon 1 of 8)	5' UTR (NM_001355678, exon 1 of 8)	289.0	NM_001355678	99887.0	Mm.26088	NM_178936	ENSMUSG00000028132	Tmem56	4930577M16Rik|AU018104|AW109744|C730036B01Rik	transmembrane protein 56	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27350515-4	chr2	27350399	27350599	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_133905, intron 1 of 29)	RMER1C|Other|Other	77109.0	NR_133905	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-144761596-2	chr5	144761496	144761696	+	617.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177735)	promoter-TSS (NM_177735)	-18.0	NM_177735	243339.0	Mm.126793	NM_177735	ENSMUSG00000043388	Tmem130	BC067004|C130036G08	transmembrane protein 130	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70758293-2	chr8	70758193	70758393	+	611.924988	f1_balb.idr|f1_c57bl6.idr	TTS (NM_183170)	TTS (NM_183170)	2628.0	NM_183170	234384.0	Mm.213010	NM_183170	ENSMUSG00000035559	Mpv17l2	Fksg24	MPV17 mitochondrial membrane protein-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-12238015-2	chr18	12237915	12238115	+	827.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	-1629.0	NM_008720	18145.0	Mm.3484	NM_008720	ENSMUSG00000024413	Npc1	A430089E03Rik|C85354|D18Ertd139e|D18Ertd723e|lcsd|nmf164|spm	NPC intracellular cholesterol transporter 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-35888249-1	chr12	35888149	35888349	+	637.0	f1_balb.idr	Intergenic	Intergenic	-37372.0	NM_207531	403205.0	Mm.190508	NM_207531	ENSMUSG00000036231	Agr3	BCMP11|E030025L21Rik|Gm888	anterior gradient 3	protein-coding	3.26231112395479	2.08242648341803	1.44253628842881	3.13974233300573	2.60106685236084	3.62314955714134	2.01700577297283	4.51494497086692	1.33919455175689	0.109674768357656	0.519015726040689
Merged-chr8-13155529-4	chr8	13155382	13155582	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3679.0	NM_001317353	16783.0	Mm.16716	NM_010684	ENSMUSG00000031447	Lamp1	CD107a|LGP-120|LGP-A|Lamp-1|P2B|Perk	lysosomal-associated membrane protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-84455385-4	chr2	84455301	84455501	+	977.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355271, intron 3 of 8)	intron (NM_001355271, intron 3 of 8)	18773.0	NM_011576	21788.0	Mm.124316	NM_011576	ENSMUSG00000027082	Tfpi	A630013F22Rik|AW552122|EPI|LACI	tissue factor pathway inhibitor	protein-coding	2.43536342574539	2.72877213242906	2.2202535283969	2.67335596892715	3.03605242660757	2.8641860758164	2.23710567067734	3.24735795397058	0.743802721756503	0.305385965852753	0.806769348156094
Merged-chr16-4609096-2	chr16	4608996	4609196	+	590.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_031184, intron 2 of 6)	intron (NM_031184, intron 2 of 6)	14383.0	NM_031184	83396.0	Mm.134072	NM_031184	ENSMUSG00000014303	Glis2	Gli5|Klf16|Nkl	GLIS family zinc finger 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-75182650-2	chr14	75182550	75182750	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008879, intron 2 of 16)	intron (NM_008879, intron 2 of 16)	46225.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-50730181-2	chr17	50730081	50730281	+	590.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31500.0	NM_001297747	12228.0	Mm.392910	NM_009770	ENSMUSG00000022863	Btg3	ANA|tob5	B cell translocation gene 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-29864480-4	chr11	29864362	29864562	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146016, intron 7 of 41)	Lx7|LINE|L1	-38794.0	NM_176829	216622.0	Mm.443260	NM_176829	ENSMUSG00000078157	4931440F15Rik	Fem1ab	RIKEN cDNA 4931440F15 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-61793581-4	chr11	61793473	61793673	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013881, intron 20 of 26)	intron (NM_013881, intron 20 of 26)	-31485.0	NM_001164243	212627.0	Mm.27703	NM_144806	ENSMUSG00000020528	Prpsap2	A230054F23Rik	phosphoribosyl pyrophosphate synthetase-associated protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-137775272-3	chr3	137775167	137775367	+	733.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	8348.0	NR_105801	102466638.0		NR_105801	ENSMUSG00000099011	Mir6380	Gm27356|mmu-mir-6380	microRNA 6380	ncRNA	2.73995873225328	2.0997319832293	2.64364301667029	2.95249760786094	2.36578448782162	2.11489333081324	1.39960647399715	2.13300557076829	-1.33648535748317	0.123211413509074	0.550368778585952
Merged-chr6-54818212-2	chr6	54818112	54818312	+	721.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_199143, intron 1 of 4)	intron (NM_199143, intron 1 of 4)	1296.0	NM_199143	387524.0	Mm.286149	NM_199143	ENSMUSG00000058446	Znrf2	1190002C14Rik|AU044205|D6Ertd365e	zinc and ring finger 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-122979313-1	chr7	122979213	122979413	+	559.0	f0_balb.idr	3' UTR (NM_175023, exon 3 of 3)	3' UTR (NM_175023, exon 3 of 3)	8749.0	NM_175023	19647.0	Mm.4480	NM_011247	ENSMUSG00000030779	Rbbp6	4933422O15Rik|AI316869|BB233631|C030034J04Rik|C77662|P2P-R|PACT	retinoblastoma binding protein 6, ubiquitin ligase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-66814683-5	chr1	66814540	66814740	+	782.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357156, intron 1 of 14)	intron (NM_001357156, intron 1 of 14)	2955.0	NM_177645	68691.0	Mm.240912	NM_177645	ENSMUSG00000026004	Kansl1l	1110028C15Rik|1190030G24|AI427598|C430010P07Rik|mKIAA4189	KAT8 regulatory NSL complex subunit 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-110429365-2	chr5	110429265	110429465	+	599.75	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001317042)	TTS (NM_001317042)	19138.0	NM_001317042	381668.0	Mm.348782	NM_028596	ENSMUSG00000043323	Fbrsl1	2410025L10Rik|AI467568|Gm1049|Gm29766|mKIAA1545	fibrosin-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-73427130-3	chr2	73427022	73427222	+	722.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26767.0	NM_001289722	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-128064362-2	chr7	128064262	128064462	+	783.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008401, intron 1 of 29)	ID_B1|SINE|B4	1722.0	NM_008401	16409.0	Mm.262106	NM_008401	ENSMUSG00000030786	Itgam	CD11b/CD18|CR3|CR3A|Cd11b|F730045J24Rik|Ly-40|MAC1|Mac-1|Mac-1a	integrin alpha M	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-58145859-3	chr15	58145783	58145983	+	904.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029734, intron 1 of 5)	PB1D9|SINE|Alu	4517.0	NM_001326599	76773.0	Mm.26771	NM_029734	ENSMUSG00000022359	Wdyhv1	2410187C16Rik|AU014961|AW550036|Ntaq1	WDYHV motif containing 1	protein-coding	4.88404352017658	5.78530207969762	4.74039596214591	4.65764594210733	2.63142685660484	3.86667137792131	2.7489347426885	2.80429960532335	-2.65369859532202	9.35166878166478e-08	8.5432478712498e-06
Merged-chr4-58912181-4	chr4	58912083	58912283	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355697)	promoter-TSS (NM_001355697)	-253.0	NM_001355696	230249.0	Mm.234801	NM_172381	ENSMUSG00000050812	AI314180	AW558785|BB181316|Ecpas|mKIAA0368	expressed sequence AI314180	protein-coding	1.97752741858022	1.31830711985864	2.13900013336314	2.18732105935062	2.09460388944538	2.45030075648818	1.88865572160669	2.09064491332016	0.502421827399028	0.598315022301692	0.972303230574462
Merged-chr2-5047148-2	chr2	5047048	5047248	+	570.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356487, intron 3 of 13)	intron (NM_001356487, intron 3 of 13)	16969.0	NM_181848	71648.0	Mm.116942	NM_181848	ENSMUSG00000026672	Optn	4930441O07Rik|FIP2|HYPL|NRP	optineurin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-51595490-2	chr11	51595390	51595590	+	563.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028398, intron 8 of 12)	intron (NM_028398, intron 8 of 12)	10733.0	NM_028398	72947.0	Mm.256875	NM_028398	ENSMUSG00000020359	Phykpl	2900006B13Rik|Agxt2l2	5-phosphohydroxy-L-lysine phospholyase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-32275541-3	chr17	32275453	32275653	+	833.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286630, intron 1 of 19)	intron (NM_001286630, intron 1 of 19)	8570.0	NM_198094	57261.0	Mm.253518	NM_020508	ENSMUSG00000024002	Brd4	Brd5|HUNK1|MCAP|WI-11513	bromodomain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-25961853-4	chr15	25961739	25961939	+	946.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001277317, intron 1 of 6)	intron (NM_001277317, intron 1 of 6)	13612.0	NR_106071	102465698.0		NR_106071	ENSMUSG00000098719	Mir7212	Gm28027|mmu-mir-7212	microRNA 7212	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-41211218-2	chr1	41211118	41211318	+	750.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29966.0	NR_040475	74897.0	Mm.243822	NR_040475	ENSMUSG00000104072	4930448I06Rik	-	RIKEN cDNA 4930448I06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-35019573-2	chr9	35019473	35019673	+	599.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001190912, intron 9 of 15)	intron (NM_001190912, intron 9 of 15)	-97155.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-76607453-4	chr16	76607367	76607567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58672.0	NR_155449	102632730.0		NR_155449		Gm30726	-	predicted gene, 30726	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52569783-2	chr13	52569683	52569883	+	695.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_046069)	TTS (NR_046069)	3442.0	NR_046069	100040572.0	Mm.278873	NR_046069		Gm2848	-	predicted gene 2848	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56287981-2	chr17	56287881	56288081	+	598.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025836, intron 1 of 7)	intron (NM_025836, intron 1 of 7)	2530.0	NM_025836	66905.0	Mm.311696	NM_025836	ENSMUSG00000024197	Plin3	1300012C15Rik|M6prbp1|Tip47	perilipin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-172482401-2	chr1	172482300	172482500	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033608)	promoter-TSS (NM_033608)	83.0	NM_033608	93842.0	Mm.214530	NM_033608	ENSMUSG00000037995	Igsf9	644ETD8|Dasm1|Kiaa1355-hp|NRT1|Ncaml|mKIAA1355	immunoglobulin superfamily, member 9	protein-coding	2.1044062136598	1.74478273188067	1.45759710764741	1.1521582141471	2.12376030040836	1.95735740790498	3.39980464873048	2.45460364958741	2.21651586549022	0.0237639939369814	0.201736131548988
Merged-chr4-148772968-4	chr4	148772858	148773058	+	952.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-31434.0	NM_001159344	69743.0	Mm.233879	NM_027195	ENSMUSG00000028977	Casz1	2410019P08Rik|AV096627|BC040081|Cst|D4Ertd432e	castor zinc finger 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-32856674-2	chr14	32856574	32856774	+	954.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361602)	promoter-TSS (NM_001361602)	-82.0	NM_178791	320736.0	Mm.187910	NM_178791	ENSMUSG00000050666	Vstm4	E130203B14Rik	V-set and transmembrane domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-165471692-2	chr1	165471592	165471792	+	894.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027430, intron 1 of 4)	PB1D9|SINE|Alu	10484.0	NM_027430	70456.0	Mm.195625	NM_027430	ENSMUSG00000026568	Mpc2	0610006C01Rik|2010002I07Rik|2610205H19Rik|AA108335|Brp44|ESTM43	mitochondrial pyruvate carrier 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-122209302-4	chr7	122209200	122209400	+	909.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10196.0	NM_027363	70261.0	Mm.96997	NM_027363	ENSMUSG00000030865	Chp2	2010110P09Rik|Cbhp2	calcineurin-like EF hand protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-52714346-4	chr6	52714221	52714421	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001355596, exon 1 of 18)	5' UTR (NM_001355596, exon 1 of 18)	156.0	NM_001355596	52440.0	Mm.389757	NM_025816	ENSMUSG00000004535	Tax1bp1	1200003J11Rik|1700069J21Rik|AA930106|D6Ertd404e|D6Ertd772e|T6bp|TXBP151	Tax1 (human T cell leukemia virus type I) binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16858553-2	chr7	16858453	16858653	+	599.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178900, intron 14 of 17)	intron (NM_178900, intron 14 of 17)	15488.0	NM_178900	101540.0	Mm.1881	NM_178900	ENSMUSG00000041187	Prkd2	AI325941|PKD2	protein kinase D2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-118302941-1	chr6	118302841	118303041	+	540.0	f0_balb.idr	intron (NR_110507, intron 4 of 5)	intron (NR_110507, intron 4 of 5)	5778.0	NR_110507	102632423.0	Mm.261755	NR_110507	ENSMUSG00000107933	Gm30498	-	predicted gene, 30498	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-67460998-2	chr7	67460898	67461098	+	634.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-88140.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	-1.84371485578039	-1.81332821174849	-1.82251738371298	-1.83006564316449	-1.84158176955426	-1.81133687985023	-1.5312619047181	-1.82871450833159	1.60090129203521	0.64914985597185	1
Merged-chr8-27175225-4	chr8	27175134	27175334	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080813)	promoter-TSS (NM_001080813)	-588.0	NM_001080813	75767.0	Mm.205335	NM_029423	ENSMUSG00000031488	Rab11fip1	2010200K21Rik|4833414G05Rik|Rcp	RAB11 family interacting protein 1 (class I)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-46872804-2	chr14	46872716	46872916	+	597.0	f0_c57.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-10149.0	NM_028966	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	1.45143552648864	1.64721367725179	2.56177931942393	2.11092578348815	0.914022324682262	1.8174211011586	0.966345923236541	1.1843893755437	-2.30676069835287	0.0564836081617999	0.350892473623718
Merged-chr1-183978794-4	chr1	183978661	183978861	+	984.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	55237.0	NM_028516	73363.0	Mm.50115	NM_028516	ENSMUSG00000044854	1700056E22Rik	-	RIKEN cDNA 1700056E22 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-15792959-4	chr6	15792856	15793056	+	936.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175088, intron 4 of 4)	intron (NM_175088, intron 4 of 4)	72295.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-137879497-4	chr3	137879388	137879588	+	950.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033155, intron 1 of 7)	RSINE1|SINE|B4	11813.0	NM_001033155	70604.0	Mm.256488	NM_001033155	ENSMUSG00000074212	Dnajb14	5730496F10Rik	DnaJ heat shock protein family (Hsp40) member B14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-81203723-4	chr7	81203584	81203784	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR10D2|LTR|ERVK	-10120.0	NM_008803	18584.0	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-62223604-1	chr15	62223504	62223704	+	583.0	f0_balb.idr	intron (NR_132746, intron 3 of 6)	intron (NR_132746, intron 3 of 6)	-4153.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	-0.468058375582389	0.0170768578604562	-0.46073424156925	-0.463494510560119	-0.00618929388979922	-0.456333128692587	-0.286528640521727	-0.463012897100722	0.347873771164253	0.89371401871916	1
Merged-chr9-109923997-4	chr9	109923914	109924114	+	999.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7760.0	NM_001205331	17758.0	Mm.217318	NM_008633	ENSMUSG00000032479	Map4	AA407148|MAP-4|Mtap-4|Mtap4	microtubule-associated protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-74381642-4	chr1	74381522	74381722	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013612, intron 8 of 14)	intron (NM_013612, intron 8 of 14)	6419.0	NM_013612	18173.0	Mm.2913	NM_013612	ENSMUSG00000026177	Slc11a1	Bcg|Ity|Ity1|Lsh|Nramp|Nramp1|ity	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-44545388-4	chr11	44545287	44545487	+	988.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166553, intron 4 of 5)	intron (NM_001166553, intron 4 of 5)	26010.0	NM_001166553	74315.0	Mm.156771	NM_028862	ENSMUSG00000019189	Rnf145	3732413I11Rik|TMRF1	ring finger protein 145	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-4247477-4	chr18	4247372	4247572	+	972.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20C2_MM|LTR|ERVK	81640.0	NM_026092	67328.0	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-43984923-2	chr9	43984823	43985023	+	689.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58461.0	NM_009382	21838.0	Mm.3951	NM_009382	ENSMUSG00000032011	Thy1	CD90|T25|Thy-1|Thy-1.2|Thy1.1|Thy1.2	thymus cell antigen 1, theta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-59200533-2	chr2	59200433	59200633	+	571.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 1 of 20)	intron (NM_175464, intron 1 of 20)	39683.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-33722760-2	chr5	33722660	33722860	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359036, intron 2 of 17)	CpG	454.0	NM_001163216	14184.0	Mm.6904	NM_008010	ENSMUSG00000054252	Fgfr3	CD333|FR3|Fgfr-3|Flg-2|HBGFR|Mfr3|sam3	fibroblast growth factor receptor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-26863704-4	chr18	26863590	26863790	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1109533.0	NM_001362334	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-120857199-4	chr4	120857081	120857281	+	867.008301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_182929, intron 1 of 7)	intron (NM_182929, intron 1 of 7)	2382.0	NM_182929	242662.0	Mm.192502	NM_182929	ENSMUSG00000032890	Rims3	A730060M23Rik|Nim3|Rim3|mKIAA0237	regulating synaptic membrane exocytosis 3	protein-coding	1.00096154193036	0.637946495681859	0.614112644383043	2.39273477606204	1.01259930875064	0.643168697581222	0.61946668550814	2.40780101504652	0.0289227367137926	0.990866163387389	0.998431161219273
Merged-chr10-127531724-1	chr10	127531624	127531824	+	574.0	f1_balb.idr	intron (NM_183297, intron 1 of 1)	intron (NM_183297, intron 1 of 1)	2835.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	0.126482102088757	-0.123514508216607	0.436427379275274	-0.132213236373323	-0.137563880857468	-0.122407144115651	-0.127342634090988	0.500927861295706	-0.250181968917277	0.914867263739155	1
Merged-chr11-106146503-4	chr11	106146405	106146605	+	807.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011947, intron 8 of 15)	intron (NM_011947, intron 8 of 15)	13422.0	NM_001356459	67803.0	Mm.21687	NM_172397	ENSMUSG00000040699	Limd2	0610025L06Rik|AI413966	LIM domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44844133-1	chr7	44844033	44844233	+	684.0	f1_c57bl6.idr	exon (NM_001042655, exon 9 of 17)	exon (NM_001042655, exon 9 of 17)	4946.0	NM_001042655	233204.0	Mm.27567	NM_144924	ENSMUSG00000038520	Tbc1d17	BC017607	TBC1 domain family, member 17	protein-coding	-0.539072095141396	-1.17607782048307	-1.18720726126045	-1.19634931528472	-1.20196491063698	-1.17366602423904	-1.18468779981884	-1.19471289198531	-2.68787187143179	0.435473844436726	1
Merged-chr12-112608403-2	chr12	112608303	112608503	+	610.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198411, intron 14 of 22)	intron (NM_198411, intron 14 of 22)	-11644.0	NM_007421	11565.0	Mm.3440	NM_007421	ENSMUSG00000011148	Adssl1	AI528595|Adss|Adss1	adenylosuccinate synthetase like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-131388467-4	chr6	131388416	131388616	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_139117)	promoter-TSS (NM_139117)	-66.0	NM_011733	56449.0	Mm.458000	NM_011733	ENSMUSG00000030189	Ybx3	Csda|Dpba|MSY3|MSY4|Yb2|dbpA|oxyR	Y box protein 3	protein-coding	3.61387751703856	2.59651310331218	3.38934350191625	3.60715599544821	3.31197969290728	4.05512753380816	3.66289930937053	3.69241221293855	0.501284074318138	0.361026796664644	0.856837565551048
Merged-chr14-70361646-4	chr14	70361550	70361750	+	991.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-10226.0	NM_001135151	213053.0	Mm.270647	NM_144808	ENSMUSG00000022094	Slc39a14	FAD-123|ZIP-14|Zip14|fad123	solute carrier family 39 (zinc transporter), member 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-23855418-1	chr16	23855318	23855518	+	544.0	f0_balb.idr	Intergenic	Intergenic	35426.0	NM_009215	20604.0	Mm.2453	NM_009215	ENSMUSG00000004366	Sst	SOM|SRIF|SS|Smst	somatostatin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-116042028-2	chr9	116041928	116042128	+	829.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028638, intron 14 of 14)	intron (NM_028638, intron 14 of 14)	132573.0	NM_028638	73748.0	Mm.485018	NM_028638	ENSMUSG00000056880	Gadl1	1110027M19Rik|ADC|CSADC	glutamate decarboxylase-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-136683942-4	chr1	136683850	136684050	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045325, intron 1 of 2)	intron (NR_045325, intron 1 of 2)	321.0	NR_045325	100503460.0	Mm.30630	NR_045324	ENSMUSG00000097113	Gm19705	-	predicted gene, 19705	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-135477090-4	chr3	135476981	135477181	+	941.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8530.0	NM_027288	110173.0	Mm.280536	NM_027288	ENSMUSG00000028164	Manba	2410030O07Rik|B930014J03Rik|Bmn	mannosidase, beta A, lysosomal	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-24488566-2	chr14	24488466	24488666	+	598.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1508.0	NM_001081247	218832.0	Mm.343610	NM_183157	ENSMUSG00000025280	Polr3a	9330175N20Rik|BC053071|RPC1|RPC155	polymerase (RNA) III (DNA directed) polypeptide A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-96437246-2	chr9	96437146	96437346	+	654.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41429.0	NM_011279	19823.0	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-82918656-2	chr18	82918556	82918756	+	641.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033307, exon 3 of 3)	non-coding (NR_033307, exon 3 of 3)	1904.0	NR_033307	75853.0	Mm.420737	NR_033307		4930592I03Rik	-	RIKEN cDNA 4930592I03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-65326846-4	chr5	65326731	65326931	+	685.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011258, intron 1 of 24)	intron (NM_011258, intron 1 of 24)	8808.0	NM_011258	19687.0	Mm.148877	NM_011258	ENSMUSG00000029191	Rfc1	140kDa|Alp145|RFC140|Recc1	replication factor C (activator 1) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-50431766-4	chr16	50431674	50431874	+	992.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027444, intron 1 of 16)	CpG	615.0	NM_027444	70508.0	Mm.28940	NM_027444	ENSMUSG00000022641	Bbx	5530401J07Rik|5730403O13Rik	bobby sox HMG box containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-122649699-1	chr6	122649599	122649799	+	842.0	f1_balb.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	23275.0	NM_139218	73708.0	Mm.27982	NM_139218	ENSMUSG00000046323	Dppa3	2410075G02Rik|PCG7|PGC7|Stella	developmental pluripotency-associated 3	protein-coding	1.29838220491359	0.83860209144711	1.06110755416132	0.802947168907309	1.6579972432357	1.64943338151565	1.06931243434726	2.43053174683366	2.80502132311346	0.0337761822500745	0.258668064661528
Merged-chr10-83857977-4	chr10	83857884	83858084	+	839.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MamRep4096|DNA|hAT?	135119.0	NM_001145198	69784.0	Mm.271188	NM_001145198	ENSMUSG00000087651	1500009L16Rik	2700050C19Rik|OCC-1	RIKEN cDNA 1500009L16 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-94869270-2	chr17	94869170	94869370	+	624.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001024731, intron 1 of 4)	B1_Mm|SINE|Alu	4352.0	NM_001024731	100044193.0		NM_001024731	ENSMUSG00000095193	Gm20939	-	predicted gene, 20939	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-83742238-2	chr7	83742138	83742338	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6699.0	NM_010551	16170.0	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	1.57766075821459	2.21717367683303	0.857158708367053	1.06989852939324	1.87627554860624	1.94190263602154	0.861728971600673	0.843764491317368	-0.160437101575311	0.906744374018741	0.998431161219273
Merged-chr8-72348038-2	chr8	72347938	72348138	+	864.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007944, intron 22 of 23)	intron (NM_007944, intron 22 of 23)	28976.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115481616-2	chr11	115481516	115481716	+	836.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177778, intron 2 of 2)	RCHARR1|DNA|hAT-Charlie	5949.0	NM_001361594	276905.0	Mm.38019	NM_177778	ENSMUSG00000057219	Armc7	A630084C13|BC023126	armadillo repeat containing 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-122608428-2	chr6	122608328	122608528	+	730.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008108, intron 1 of 1)	intron (NM_008108, intron 1 of 1)	1659.0	NM_008108	14562.0	Mm.299742	NM_008108	ENSMUSG00000030117	Gdf3	C78318|Gdf-3|Vgr-2|Vgr2|ecat9	growth differentiation factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-129005272-1	chr5	129005172	129005372	+	1000.0	f1_balb.idr	intron (NR_152615, intron 1 of 11)	intron (NR_152615, intron 1 of 11)	3300.0	NR_152615	13852.0	Mm.260716	NM_007941	ENSMUSG00000029428	Stx2	AW538950|Epim|G1-536-1|Syn-2|repro34	syntaxin 2	protein-coding	0.520248435375385	0.749391339965406	0.285706204527644	0.676101582395213	0.526594651226101	0.292545900012403	0.453632646890276	0.566978834361325	-0.747614534079971	0.664765005835809	1
Merged-chr3-108554760-4	chr3	108554626	108554826	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028538)	promoter-TSS (NR_028538)	-324.0	NR_028538	100217438.0		NR_028538		Scarna2	MBII-382	small Cajal body-specific RNA 2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90577765-4	chr2	90577654	90577854	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	B4A|SINE|B4	2893.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-64193880-2	chr1	64193780	64193980	+	743.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72491.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-149780775-4	chr4	149780681	149780881	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MD|LINE|L1	-6514.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4129099-2	chr19	4128999	4129199	+	599.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025889, intron 5 of 6)	intron (NM_025889, intron 5 of 6)	3139.0	NM_025889	66990.0	Mm.276255	NM_025889		Tmem134	2410001H17Rik|AI463452	transmembrane protein 134	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-45344473-4	chr8	45344384	45344584	+	906.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_153535, exon 10 of 14)	exon (NM_153535, exon 10 of 14)	-11288.0	NM_133969	102294.0	Mm.245297	NM_133969	ENSMUSG00000079057	Cyp4v3	AU043077|AW111961|Cyp4v2	cytochrome P450, family 4, subfamily v, polypeptide 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-122119693-2	chr10	122119593	122119793	+	650.791626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027637)	promoter-TSS (NR_027637)	-4.0	NR_027637	100043513.0	Mm.429141	NR_027637	ENSMUSG00000111952	Gm4489	Gm241	predicted gene 4489	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-58724284-4	chr1	58724206	58724406	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355056, intron 1 of 8)	intron (NM_001355056, intron 1 of 8)	-6246.0	NM_001293805	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-34695716-4	chr5	34695614	34695814	+	956.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019497, intron 5 of 15)	intron (NM_019497, intron 5 of 15)	35335.0	NM_019497	14772.0	Mm.117076	NM_019497	ENSMUSG00000052783	Grk4	A830025H08Rik|GRK|Gprk2l|Gprk4	G protein-coupled receptor kinase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6867045-2	chr19	6866945	6867145	+	550.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8834.0	NM_001081291	78317.0	Mm.329596	NM_198008	ENSMUSG00000047810	Ccdc88b	2610041P08Rik|Ccdc88	coiled-coil domain containing 88B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-148893674-1	chr1	148893574	148893774	+	556.0	f0_balb.idr	Intergenic	L1MCa|LINE|L1	1028765.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107569055-4	chr9	107568958	107569158	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010489)	promoter-TSS (NM_010489)	-105.0	NM_010489	15587.0	Mm.4834	NM_010489	ENSMUSG00000010047	Hyal2	AI256841|AU020858|AW555733	hyaluronoglucosaminidase 2	protein-coding	3.34594455622513	2.81553964023881	4.99729432139815	2.77172461916724	3.8436192207847	4.03192902923226	4.50353732535642	3.71033817173728	0.282681247414269	0.643185145837825	0.982823301118608
Merged-chr15-66768825-4	chr15	66768728	66768928	+	871.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009375, intron 40 of 47)	intron (NM_009375, intron 40 of 47)	63001.0	NM_001029841	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-79533566-2	chr11	79533466	79533666	+	651.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010897, intron 36 of 57)	RMER1A|Other|Other	-2957.0	NM_010161	14017.0	Mm.439665	NM_010161	ENSMUSG00000078771	Evi2a	AW491894|Evi-2|Evi2	ecotropic viral integration site 2a	protein-coding	-1.58994551673671	-1.55912852307891	-1.56844783632235	-1.57610299769523	-1.18549093183599	-1.55710898902261	-1.56633814807757	-1.57473272746952	1.78703309985663	0.610309988231842	1
Merged-chr9-106820189-2	chr9	106820089	106820289	+	589.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1787.0	NM_001015507	321006.0	Mm.440089	NM_001015507	ENSMUSG00000040325	Dcaf1	AI447437|B930007L02Rik|Vprbp|mKIAA0800	DDB1 and CUL4 associated factor 1	protein-coding	-0.435773845197323	-0.424741796166605	0.115577099703441	-0.14130049335493	-0.435089327050091	-0.423921550678098	-0.427572225886268	-0.137009635467618	-1.57326677848299	0.544127313700176	1
Merged-chr9-55277793-3	chr9	55277684	55277884	+	724.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_032002, intron 3 of 7)	B1F|SINE|Alu	5841.0	NM_032002	83961.0	Mm.443874	NM_032002	ENSMUSG00000032311	Nrg4	AI552600	neuregulin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45169767-2	chr7	45169667	45169867	+	809.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_182993, intron 2 of 11)	intron (NM_182993, intron 2 of 11)	-3536.0	NR_106022	102465638.0		NR_106022	ENSMUSG00000106470	Mir7055	mmu-mir-7055	microRNA 7055	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90491024-3	chr2	90490994	90491194	+	769.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	(A)n|Simple_repeat|Simple_repeat	-11920.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	-1.7024385483431	-1.81249224917775	-1.82134771053534	-1.82862185015837	-1.70038292649591	-1.81057323376012	-1.81934302819017	-1.82731978264371	0.0376840119903864	0.991491645451152	1
Merged-chr17-64398873-3	chr17	64398769	64398969	+	747.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41937.0	NR_105848	102465228.0		NR_105848	ENSMUSG00000098984	Mir6420	Gm28007|mmu-mir-6420	microRNA 6420	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-41665697-4	chr10	41665575	41665775	+	999.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358562, intron 10 of 47)	L1MB2|LINE|L1	50788.0	NM_001358562	75973.0	Mm.228517	NM_029493	ENSMUSG00000075225	Ccdc162	5033413D22Rik|Ccdc162p|Gm29096|Gm61|Gm6976	coiled-coil domain containing 162	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-95698292-2	chr9	95698192	95698392	+	572.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52066.0	NM_001311123	22063.0	Mm.149633	NM_011643	ENSMUSG00000032839	Trpc1	Mtrp1|Trp1|Trrp1	transient receptor potential cation channel, subfamily C, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-67758130-2	chr5	67758033	67758233	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038999, intron 14 of 36)	intron (NM_001038999, intron 14 of 36)	89298.0	NM_009727	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	-1.53362919331644	-1.50201671710775	-1.51157659084044	-1.08120497225282	-1.53141005593807	-1.49994505258991	-1.50941244497383	-1.51802371459528	-1.94474658522739	0.577200604274218	1
Merged-chr4-123650370-2	chr4	123650270	123650470	+	559.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199137, intron 1 of 92)	intron (NM_001199137, intron 1 of 92)	-15511.0	NR_136925	102633214.0	Mm.399387	NR_136925		Gm12925	-	predicted gene 12925	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-22896327-2	chr8	22896227	22896427	+	660.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081149, intron 3 of 17)	intron (NM_001081149, intron 3 of 17)	36788.0	NM_001081149	244349.0	Mm.182776	NM_001081149	ENSMUSG00000031540	Kat6a	1500036M03|9930021N24Rik|MOZ|Myst3|Zfp220	K(lysine) acetyltransferase 6A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-110337645-4	chr11	110337498	110337698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_147219, exon 1 of 39)	5' UTR (NM_147219, exon 1 of 39)	118.0	NM_147219	217265.0	Mm.41942	NM_147219	ENSMUSG00000018800	Abca5	ABC13|B930033A02Rik|mKIAA1888	ATP-binding cassette, sub-family A (ABC1), member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-23885731-4	chr13	23885645	23885845	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_121611, intron 10 of 12)	intron (NR_121611, intron 10 of 12)	15472.0	NM_001170638	20504.0	Mm.2656	NM_009198	ENSMUSG00000021335	Slc17a1	NAPI-1|Napi1|Npt1	solute carrier family 17 (sodium phosphate), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-125158330-1	chr5	125158230	125158430	+	658.0	f0_balb.idr	intron (NM_001253905, intron 1 of 42)	intron (NM_001253905, intron 1 of 42)	20884.0	NM_001253905	20602.0	Mm.278646	NM_011424	ENSMUSG00000029478	Ncor2	N-CoR|SMRT|SMRTe	nuclear receptor co-repressor 2	protein-coding	-1.7024385483431	-1.81249224917775	-1.82134771053534	-1.82862185015837	-1.70038292649591	-1.81057323376012	-1.81934302819017	-1.82731978264371	0.0376840119903864	0.991491645451152	1
Merged-chr19-22595488-2	chr19	22595388	22595588	+	567.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177341, intron 1 of 26)	intron (NM_177341, intron 1 of 26)	-97131.0	NM_001035245	226025.0	Mm.131943	NM_177341	ENSMUSG00000052387	Trpm3	6330504P12Rik|9330180E14|AU018608|B930001P07Rik|LTRPC3|MLSN2	transient receptor potential cation channel, subfamily M, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70718032-1	chr11	70717932	70718132	+	600.0	f1_c57bl6.idr	intron (NM_153103, intron 17 of 22)	intron (NM_153103, intron 17 of 22)	12042.0	NR_105890	102465557.0		NR_105890	ENSMUSG00000105932	Mir6925	mmu-mir-6925	microRNA 6925	ncRNA	0.53362617709554	-0.31621042964763	-0.138493429648499	-0.324389929002386	-0.0495892382820776	-0.315170916648417	-0.31980705199939	-0.323766960571372	-2.13801153286147	0.387328524802856	1
Merged-chr3-123267977-4	chr3	123267892	123268092	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027135, intron 1 of 22)	CpG	496.0	NM_027135	69608.0	Mm.29293	NM_027135	ENSMUSG00000039234	Sec24d	2310020L09Rik|Gm1349	Sec24 related gene family, member D (S. cerevisiae)	protein-coding	2.21776800345869	2.22834413122662	2.00382528566012	2.33705050475946	3.0579103707301	1.42018674123725	2.304421520925	2.45331976008472	0.574204139235018	0.523675003774532	0.948197779519432
Merged-chr7-110860308-3	chr7	110860202	110860402	+	993.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053247, intron 1 of 5)	intron (NM_053247, intron 1 of 5)	2651.0	NM_053247	114332.0	Mm.396078	NM_053247	ENSMUSG00000030787	Lyve1	1200012G08Rik|Crsbp-1|Lyve-1|Xlkd1	lymphatic vessel endothelial hyaluronan receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-17619435-4	chr16	17619332	17619532	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029945)	promoter-TSS (NM_029945)	78.0	NM_001164609	77626.0	Mm.34659	NM_029945	ENSMUSG00000005899	Smpd4	4122402O22Rik	sphingomyelin phosphodiesterase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-121214705-2	chr4	121214605	121214805	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_001346660, intron 1 of 7)	CpG	379.0	NM_001346660	109263.0	Mm.215745	NM_001081013	ENSMUSG00000049878	Rlf	9230110M18Rik|AI195322|MommeD8	rearranged L-myc fusion sequence	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-103775618-2	chr13	103775518	103775718	+	795.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR19|LTR|ERVK	-1010.0	NM_001361085	218543.0	Mm.458176	NM_172592	ENSMUSG00000032621	Srek1	8430401B01|AI450757|AI462342|SRrp508|SRrp86|Sfrs12|Srsf12	splicing regulatory glutamine/lysine-rich protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-151917914-4	chr1	151917840	151918040	+	888.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197990, intron 4 of 5)	intron (NM_197990, intron 4 of 5)	162566.0	NM_001311166	66967.0	Mm.337691	NM_001039644	ENSMUSG00000043019	Edem3	2310050N11Rik	ER degradation enhancer, mannosidase alpha-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25129020-4	chr7	25128900	25129100	+	994.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163556, intron 1 of 13)	B1_Mus2|SINE|Alu	3460.0	NM_011138	18987.0	Mm.76683	NM_011138	ENSMUSG00000008496	Pou2f2	Oct-2|Oct2a|Oct2b|Oct2c|Oct2d|Otf-2|Otf2	POU domain, class 2, transcription factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-80258856-1	chr15	80258756	80258956	+	1000.0	f1_balb.idr	Intergenic	Intergenic	3672.0	NM_009716	11911.0	Mm.641	NM_009716	ENSMUSG00000042406	Atf4	Atf-4|C/ATF|CREB2|TAXREB67	activating transcription factor 4	protein-coding	3.86380381507413	2.30269243867047	2.92048679997184	2.67740564017538	2.67480784707514	5.19701823493002	3.60480588166226	4.97404011260037	1.88254521005938	0.00430916249433422	0.059518033315835
Merged-chr1-131364610-4	chr1	131364513	131364713	+	961.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081011, intron 4 of 22)	intron (NM_001081011, intron 4 of 22)	-85050.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-51912553-2	chr1	51912453	51912653	+	583.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010863, intron 1 of 29)	intron (NM_010863, intron 1 of 29)	3425.0	NM_001161817	17912.0	Mm.3390	NM_010863	ENSMUSG00000018417	Myo1b	AA406997|MIH-L|MMIa	myosin IB	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-143567942-1	chr5	143567842	143568042	+	564.0	f0_balb.idr	Intergenic	Intergenic	19236.0	NM_026050	67238.0	Mm.383219	NM_026050	ENSMUSG00000083012	Fam220a	1500026F15Rik|2810453I06Rik|AW047776|Acpin1|Sipar	family with sequence similarity 220, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-53560150-3	chr11	53560051	53560251	+	995.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7218.0	NM_008443	16568.0	Mm.88694	NM_008443	ENSMUSG00000018395	Kif3a	Kif3|Kifl|Kns3	kinesin family member 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116581018-4	chr11	116580974	116581174	+	896.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_173755, exon 1 of 18)	exon (NM_173755, exon 1 of 18)	373.0	NM_173755	217342.0	Mm.243950	NM_173755	ENSMUSG00000020802	Ube2o	9630022H21|B230113M03Rik|E2-230K|mKIAA1734	ubiquitin-conjugating enzyme E2O	protein-coding	0.457542878100888	1.14518575363225	1.09082972849547	0.469636459376482	1.08087985468351	0.488197422916165	1.10294180308221	0.470900166141991	-0.0568611487353325	0.974350718997267	1
Merged-chr19-16393956-2	chr19	16393856	16394056	+	632.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MCa|LINE|L1	-41711.0	NM_008137	14675.0	Mm.313181	NM_008137	ENSMUSG00000024697	Gna14	AU023208	guanine nucleotide binding protein, alpha 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-90222187-1	chr3	90222087	90222287	+	548.0	f1_c57bl6.idr	intron (NM_026677, intron 1 of 7)	intron (NM_026677, intron 1 of 7)	1403.0	NM_026677	68328.0	Mm.29355	NM_026677	ENSMUSG00000027935	Rab13	0610007N03Rik|B230212B15Rik	RAB13, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-116138862-5	chr9	116138678	116138878	+	798.546692	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029575, intron 1 of 6)	intron (NM_029575, intron 1 of 6)	36585.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-60202937-2	chr11	60202837	60203037	+	687.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_105887)	promoter-TSS (NR_105887)	-610.0	NR_105887	102465556.0		NR_105887	ENSMUSG00000099259	Mir6922	Gm27269|mmu-mir-6922	microRNA 6922	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4943799-2	chr16	4943699	4943899	+	918.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028301, intron 11 of 16)	intron (NM_028301, intron 11 of 16)	-4214.0	NR_037666	100503704.0	Mm.480572	NR_037666	ENSMUSG00000097397	Gm16861	-	predicted gene, 16861	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-71730381-3	chr1	71730288	71730488	+	945.8666380000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	77053.0	NR_040308	100042814.0	Mm.405775	NR_040308	ENSMUSG00000073652	Apol7d	Gm15456	apolipoprotein L 7d	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-110847093-4	chr8	110847022	110847222	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133953)	promoter-TSS (NM_133953)	98.0	NM_133973	102339.0	Mm.272930	NM_133973	ENSMUSG00000031753	Cog4	AW554810|D8Ertd515e	component of oligomeric golgi complex 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-9073241-2	chr1	9073141	9073341	+	651.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027671, intron 2 of 20)	L1_Mus1|LINE|L1	226636.0	NM_001290393	71096.0	Mm.336395	NM_027671	ENSMUSG00000025909	Sntg1	4933426D16Rik|G1SYN|SYN4	syntrophin, gamma 1	protein-coding	-0.151591052260365	-0.130940799197888	0.714739633291343	-0.142844897156857	-0.150282248982373	-0.12944136653855	0.729351554324659	-0.141931488452262	0.041083046276385	0.986412301813541	1
Merged-chr11-11770125-2	chr11	11770025	11770225	+	552.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001301868, exon 8 of 8)	3' UTR (NM_001301868, exon 8 of 8)	38837.0	NM_021891	60530.0	Mm.236114	NM_021891	ENSMUSG00000035455	Fignl1	-	fidgetin-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-38560787-4	chr5	38560695	38560895	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011715, intron 2 of 14)	intron (NM_011715, intron 2 of 14)	800.0	NM_011715	22388.0	Mm.2654	NM_011715	ENSMUSG00000005103	Wdr1	Aip1|D5Wsu185e|rede	WD repeat domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-74218882-2	chr18	74218781	74218981	+	627.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_028868, exon 7 of 15)	exon (NM_028868, exon 7 of 15)	2669.0	NM_028868	74322.0	Mm.17537	NM_028868	ENSMUSG00000024560	Cxxc1	2410002I16Rik|5830420C16Rik|AI426635|Cfp1|Cgbp|PHF18	CXXC finger 1 (PHD domain)	protein-coding	0.926882038436399	0.99988870331802	0.361678833448332	0.355817889347772	0.499932840043015	1.01141291533505	0.363351342465335	0.529788663363897	-0.411169413106608	0.815483864926817	1
Merged-chr19-5953541-4	chr19	5953454	5953654	+	984.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164057, intron 6 of 17)	intron (NM_001164057, intron 6 of 17)	10652.0	NM_001164057	18969.0	Mm.209931	NM_008893	ENSMUSG00000024833	Pola2	AI573378	polymerase (DNA directed), alpha 2	protein-coding	4.89805326398267	4.23862828463165	3.11151359853308	4.53942212059173	3.82018330592968	4.13346306406749	3.99971145286411	4.1851733310659	-0.418320813402107	0.381413961484238	0.872879327710422
Merged-chr6-17655319-3	chr6	17655198	17655398	+	854.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007604, intron 4 of 9)	intron (NM_007604, intron 4 of 9)	18288.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-3630616-4	chr7	3630548	3630748	+	780.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290381)	promoter-TSS (NM_001290381)	663.0	NM_027328	68988.0	Mm.246863	NM_027328	ENSMUSG00000008373	Prpf31	1500019O16Rik|2810404O06Rik|AW554706|PRP31|RP11	pre-mRNA processing factor 31	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41372564-4	chr19	41372456	41372656	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 2 of 16)	intron (NM_031376, intron 2 of 16)	12514.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	1.84543984085993	1.13407476539725	1.73354861626134	1.51793159611944	2.62829373305025	1.96774102768872	1.11329605695068	2.51298866544367	1.60107115519781	0.146668612852081	0.5967883846934
Merged-chr18-53672228-2	chr18	53672128	53672328	+	653.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_040349, intron 1 of 2)	B3A|SINE|B2	24077.0	NR_040349	100502945.0	Mm.376937	NR_040349		Gm19466	-	predicted gene, 19466	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-90604788-4	chr6	90604682	90604882	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027868)	promoter-TSS (NM_027868)	-98.0	NM_027868	71699.0	Mm.272633	NM_027868	ENSMUSG00000030089	Slc41a3	1010001P06Rik|AI480742|SLC41A1-L2	solute carrier family 41, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140338153-2	chr5	140338053	140338253	+	622.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001356585)	TTS (NM_001356585)	6197.0	NM_001356584	17766.0	Mm.118846	NM_008637	ENSMUSG00000036639	Nudt1	Mth1	nudix (nucleoside diphosphate linked moiety X)-type motif 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-151044800-4	chr4	151044695	151044895	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289878)	promoter-TSS (NM_001289878)	-130.0	NM_001289878	18628.0	Mm.121361	NM_011067	ENSMUSG00000028957	Per3	2810049O06Rik|mPer3	period circadian clock 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-142261454-2	chr3	142261354	142261554	+	575.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001190854, intron 8 of 12)	(CA)n|Simple_repeat|Simple_repeat	-92029.0	NM_001277216	12167.0	Mm.39089	NM_007560	ENSMUSG00000052430	Bmpr1b	AI385617|ALK-6|AV355320|Acvrlk6|Alk6|BMPR-1B|BMPR-IB|CFK-43a|SKR6	bone morphogenetic protein receptor, type 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123662241-4	chr5	123662142	123662342	+	998.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359224, intron 1 of 18)	intron (NM_001359224, intron 1 of 18)	22119.0	NM_019765	56430.0	Mm.241109	NM_019765	ENSMUSG00000049550	Clip1	1110007I12Rik|4631429H07Rik|AV017631|C81039|CLIP-170|CLIP170|CYLN1|Clip50|Rsn|mKIAA4046|restin	CAP-GLY domain containing linker protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-163699662-4	chr2	163699558	163699758	+	758.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011106, intron 1 of 3)	intron (NM_011106, intron 1 of 3)	5621.0	NM_011106	18769.0	Mm.10091	NM_011106	ENSMUSG00000035268	Pkig	PKIgamma	protein kinase inhibitor, gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-82935183-4	chr10	82935083	82935283	+	822.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50314.0	NM_021439	58250.0	Mm.360747	NM_021439	ENSMUSG00000034612	Chst11	1110020P09Rik|C4ST|C4ST-1|C4ST1|C4s	carbohydrate sulfotransferase 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-12091059-4	chr16	12090979	12091179	+	968.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028277, intron 2 of 4)	Tigger9b|DNA|TcMar-Tigger	106966.0	NM_001174086	72555.0	Mm.310139	NM_028277	ENSMUSG00000022494	Shisa9	2700045P11Rik|Ckamp44	shisa family member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129355731-1	chr2	129355631	129355831	+	894.0	f1_balb.idr	Intergenic	L1Md_F2|LINE|L1	-14171.0	NR_015474	329514.0	Mm.207315	NM_177848	ENSMUSG00000074805	Il1bos	9430083I22|Gm14047	interleukin 1 beta, opposite strand	ncRNA	2.58152189068509	1.39098181042501	2.71251448270518	1.28701675104453	1.72798135240036	3.92387553962121	3.8477940227976	3.12430040872104	2.158832016511	0.0153206671790256	0.147289555139382
Merged-chr7-16193949-2	chr7	16193843	16194043	+	633.900024	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	18548.0	NR_102730	17537.0	Mm.360516	NM_008627	ENSMUSG00000041420	Meis3	AI573393|Mrg2	Meis homeobox 3	protein-coding	3.28019504982282	2.39089017877022	3.66893306133309	3.16662256307852	3.02954550858513	3.30643127261426	1.61621298831817	3.09912663404908	-0.510097388017724	0.486422082734696	0.932503166794264
Merged-chr10-94464070-3	chr10	94463945	94464145	+	795.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 2 of 4)	intron (NM_001359762, intron 2 of 4)	-50812.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-62482197-2	chr4	62482097	62482297	+	692.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_138653, intron 1 of 6)	L2|LINE|L2	2130.0	NM_138653	192120.0	Mm.29808	NM_138653	ENSMUSG00000028392	Bspry	-	B-box and SPRY domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107231400-2	chr9	107231300	107231500	+	615.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153413, intron 1 of 52)	CpG	509.0	NM_153413	208869.0	Mm.150259	NM_153413	ENSMUSG00000039716	Dock3	MOCA|PBP|mKIAA0299	dedicator of cyto-kinesis 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-163932368-3	chr2	163932260	163932460	+	995.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13677.0	NM_183023	241770.0	Mm.330760	NM_183023	ENSMUSG00000035226	Rims4	6530406L02|Rim4	regulating synaptic membrane exocytosis 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-51529046-4	chr10	51528958	51529158	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MuRRS4-int|LTR|ERV1	38160.0	NM_013532	14728.0	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-46705081-4	chr17	46704993	46705193	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009358)	promoter-TSS (NM_009358)	-67.0	NM_001357684	21770.0	Mm.295009	NM_009358	ENSMUSG00000059409	Ppp2r5d	B'delta|TEG-271|Tex271	protein phosphatase 2, regulatory subunit B', delta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-77606980-4	chr11	77606877	77607077	+	997.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144825, intron 1 of 19)	intron (NM_144825, intron 1 of 19)	838.0	NM_144825	216965.0	Mm.340436	NM_144825	ENSMUSG00000017291	Taok1	2810468K05Rik|AU020252|D130018F14Rik|Map3k16|Markk|Psk2|mKIAA1361	TAO kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-85829436-1	chr10	85829336	85829536	+	583.0	f0_balb.idr	Intergenic	CpG	-42395.0	NM_133993	103136.0	Mm.18834	NM_133993	ENSMUSG00000001785	Pwp1	2310058A11Rik|2610205J09Rik|AI098170|AL022879|AV083409|AW550690	PWP1 homolog, endonuclein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76703119-2	chr15	76703019	76703219	+	572.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_058214)	TTS (NM_058214)	1577.0	NM_027122	69572.0	Mm.34920	NM_027122	ENSMUSG00000019080	Mfsd3	2310010G13Rik	major facilitator superfamily domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30882299-2	chr7	30882199	30882399	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1957.0	NM_001043317	12483.0	Mm.260994	NM_009845	ENSMUSG00000030577	Cd22	A530093D23|Lyb-8|Lyb8	CD22 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-64189725-4	chr1	64189640	64189840	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-68351.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-36571543-3	chr3	36571445	36571645	+	875.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009828, intron 2 of 8)	CpG	1493.0	NM_009828	12428.0	Mm.4189	NM_009828	ENSMUSG00000027715	Ccna2	AA408589|Ccn-1|Ccn1|Ccna|CycA2|Cyca	cyclin A2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-142393285-4	chr7	142393178	142393378	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5408.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	5.53774504329091	5.41975948531408	4.72319362841703	5.73478605567985	5.1947481543796	5.0459867738723	4.24485900536494	4.71128802573231	-0.653784710028454	0.0578580471718027	0.356111927137802
Merged-chr8-117364995-4	chr8	117364895	117365095	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028941, intron 1 of 20)	intron (NM_028941, intron 1 of 20)	15825.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-121900734-3	chr5	121900635	121900835	+	874.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007804, intron 4 of 22)	intron (NM_007804, intron 4 of 22)	51738.0	NM_001359949	231717.0	Mm.12654	NM_175474	ENSMUSG00000044134	Fam109a	A230106M15Rik|AU017694|IPIP27A|Ses1	family with sequence similarity 109, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-146634458-4	chr6	146634369	146634569	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_026281, exon 1 of 12)	5' UTR (NM_026281, exon 1 of 12)	123.0	NM_026281	67623.0	Mm.278037	NM_026281	ENSMUSG00000040234	Tm7sf3	2010003B14Rik|NARP1	transmembrane 7 superfamily member 3	protein-coding	3.26366360554512	2.76136523445469	3.59859224958273	3.56354932825426	2.59071925204224	3.74405783972197	1.93247139401977	2.95533929377376	-0.611907014471258	0.374147963415073	0.867141279322472
Merged-chr4-75317346-4	chr4	75317245	75317445	+	886.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-39053.0	NM_025849	66928.0	Mm.24332	NM_025849	ENSMUSG00000028398	Dmac1	1700027K24Rik|3110001D03Rik|Tmem261	distal membrane arm assembly complex 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-9760219-4	chr13	9760125	9760325	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347474, intron 1 of 14)	intron (NM_001347474, intron 1 of 14)	3585.0	NM_001347471	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-151683200-4	chr1	151683079	151683279	+	941.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022018, intron 5 of 13)	intron (NM_022018, intron 5 of 13)	71548.0	NR_151474	102640772.0		NR_151473	ENSMUSG00000100594	2810414N06Rik	-	RIKEN cDNA 2810414N06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114960511-3	chr11	114960412	114960612	+	868.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199225)	promoter-TSS (NM_199225)	-95.0	NM_199225	387565.0	Mm.351450	NM_199225	ENSMUSG00000058728	Cd300c	Clm6	CD300C molecule	protein-coding	-1.5081512200108	-1.16747411261397	-1.48555311441572	-1.49360012887111	-1.35277997577344	-1.47363385318999	-1.48333543526107	-1.49215971713098	-0.845322528307886	0.808204946884173	1
Merged-chr4-128658958-2	chr4	128658858	128659058	+	697.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001195130, intron 1 of 14)	intron (NM_001195130, intron 1 of 14)	4256.0	NM_001195130	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-90934312-2	chr16	90934212	90934412	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026502, intron 1 of 6)	CpG	537.0	NM_026502	68001.0	Mm.45374	NM_026502	ENSMUSG00000022972	1110004E09Rik	-	RIKEN cDNA 1110004E09 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-9218021-3	chr3	9217904	9218104	+	617.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32563.0	NM_177660	229055.0	Mm.103262	NM_177660	ENSMUSG00000069114	Zbtb10	4832414A18|AU021107|RINZF	zinc finger and BTB domain containing 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-98739220-2	chr15	98739120	98739320	+	986.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007478, exon 5 of 5)	3' UTR (NM_007478, exon 5 of 5)	-11022.0	NM_024169	66120.0	Mm.30729	NM_024169	ENSMUSG00000003355	Fkbp11	1110002O23Rik|FKBP-11	FK506 binding protein 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-82863304-4	chr8	82863215	82863415	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177378)	promoter-TSS (NM_177378)	-41.0	NM_177378	330812.0	Mm.491438	NM_177378	ENSMUSG00000047747	Rnf150	A630007N06Rik|C030044C12Rik|Greul5|mKIAA1214	ring finger protein 150	protein-coding	2.25200153490196	2.16425573961338	2.22193993297583	2.37315890252386	1.48907366466853	2.0250353216776	1.78921429799247	2.84889176194357	-0.21094683115028	0.818539164752771	0.998431161219273
Merged-chr5-66111102-2	chr5	66111002	66111202	+	811.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001127382, intron 2 of 7)	intron (NM_001127382, intron 2 of 7)	-12923.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70296772-2	chr8	70296672	70296872	+	566.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001024922, intron 6 of 12)	PB1D9|SINE|Alu	5680.0	NM_001024922	234374.0	Mm.388127	NM_001024922	ENSMUSG00000057788	Ddx49	R27090_2	DEAD (Asp-Glu-Ala-Asp) box polypeptide 49	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-178013495-4	chr2	178013404	178013604	+	700.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	-9780.0	NM_001177400	626848.0	Mm.422604	NM_001177399	ENSMUSG00000074519	Zfp971	Etohi1	zinc finger protein 971	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-80738467-4	chr8	80738397	80738597	+	962.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053124, intron 1 of 23)	CpG	962.0	NM_053124	93762.0	Mm.246803	NM_053124	ENSMUSG00000031715	Smarca5	4933427E24Rik|D030040M08Rik|D330027N15Rik|MommeD4|Snf2h	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-82178572-5	chr10	82178434	82178634	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	50521.0	NM_001163064	216177.0	Mm.482395	NM_001163064	ENSMUSG00000078435	AU041133	-	expressed sequence AU041133	protein-coding	5.13077603444275	4.14313382182082	5.21153275273092	4.21646077082836	5.21422951298705	4.01044215677177	5.04906018587052	4.11478745199109	-0.0733981890934687	0.865241459401798	0.998431161219273
Merged-chr16-38238545-2	chr16	38238445	38238645	+	611.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347232, intron 11 of 11)	intron (NM_001347232, intron 11 of 11)	56279.0	NM_010936	18171.0	Mm.8509	NM_010936	ENSMUSG00000022809	Nr1i2	PXR|PXR.1|PXR.2|PXR1|SXR|mPXR	nuclear receptor subfamily 1, group I, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140765641-4	chr5	140765540	140765740	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010302, intron 2 of 3)	intron (NM_010302, intron 2 of 3)	41513.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-172436436-2	chr2	172436336	172436536	+	804.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER68|LTR|ERVL	-4142.0	NM_025542	66404.0	Mm.25157	NM_025542	ENSMUSG00000027502	Rtf2	1700067C04Rik|2410001C21Rik|5730427M17Rik|AA589417|Rtfdc1	replication termination factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78935076-4	chr15	78934937	78935137	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_133800, exon 1 of 6)	exon (NM_133800, exon 1 of 6)	104.0	NM_133800	97961.0	Mm.157216	NM_133800	ENSMUSG00000033099	Nol12	C78541|Nop25	nucleolar protein 12	protein-coding	4.02557507428891	2.46309181320339	4.42896805218422	3.90427776293061	3.9086748618211	4.10867987462012	3.97855232154218	3.5725320527208	0.0241667719858752	0.963847915479904	0.998431161219273
Merged-chr4-11476327-1	chr4	11476227	11476427	+	553.0	f0_c57.idr	Intergenic	Intergenic	-9631.0	NM_001081183	66185.0	Mm.331487	NM_001081183	ENSMUSG00000040720	Virma	1110037F02Rik|4930422M05Rik|Kiaa1429|mKIAA1429	vir like m6A methyltransferase associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-4562542-2	chr2	4562442	4562642	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177844, intron 1 of 11)	intron (NM_001177844, intron 1 of 11)	2788.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-79909307-4	chr10	79909191	79909391	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359629)	promoter-TSS (NM_001359629)	-353.0	NM_001359629	216154.0	Mm.260089	NM_198107	ENSMUSG00000013833	Med16	95kDa|A630083L04|DRIP92|Thrap5|Trap95	mediator complex subunit 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125412670-2	chr6	125412570	125412770	+	694.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32166.0	NM_198604	213522.0	Mm.333396	NM_198604	ENSMUSG00000038167	Plekhg6	BC026778|Gm155	pleckstrin homology domain containing, family G (with RhoGef domain) member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-34977375-4	chr2	34977278	34977478	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15606.0	NM_001326601	22029.0	Mm.239514	NM_009421	ENSMUSG00000026875	Traf1	4732496E14Rik	TNF receptor-associated factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-34162967-4	chr13	34162805	34163005	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001101430)	promoter-TSS (NM_001101430)	-59.0	NM_001101430	69666.0	Mm.24788	NM_001101430	ENSMUSG00000071451	Psmg4	PAC-4|mPAC4	proteasome (prosome, macropain) assembly chaperone 4	protein-coding	5.01987108088033	5.56616335675259	4.67362542819374	4.9641140582913	5.40560564179721	5.41744375221652	4.55221721102467	4.8751132356632	0.0256994854098937	0.940306989822095	0.998431161219273
Merged-chr2-129305519-2	chr2	129305404	129305604	+	855.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_040371, intron 3 of 4)	intron (NR_040371, intron 3 of 4)	4468.0	NM_010554	16175.0	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	2.37521109638099	2.85854152417759	2.25121880254094	2.75760498401663	2.63575639516306	2.0433939779689	1.30973171074973	1.27832133732792	-1.38379720259827	0.154943914147474	0.610178472914225
Merged-chr12-80946163-4	chr12	80946077	80946277	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045057)	promoter-TSS (NR_045057)	678.0	NM_001347415	20384.0	Mm.43331	NM_009159	ENSMUSG00000021134	Srsf5	Sfrs5	serine/arginine-rich splicing factor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-43579229-2	chr16	43579129	43579329	+	876.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_181058, intron 5 of 6)	intron (NM_181058, intron 5 of 6)	-61426.0	NR_030576	100124467.0		NR_030576	ENSMUSG00000076372	Mir568	Mirn568|mmu-mir-568	microRNA 568	ncRNA	-0.317174774914876	0.282082147401165	-0.600673939914653	-0.604051620913064	-0.608847209000576	-0.595335716984071	-0.599710747652842	-0.603460606257713	-3.54301506102005	0.188208996652481	1
Merged-chr12-3776061-3	chr12	3775905	3776105	+	910.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027870, intron 18 of 19)	intron (NR_027870, intron 18 of 19)	-30975.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100891417-2	chr11	100891317	100891517	+	707.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_213660, intron 21 of 23)	intron (NM_213660, intron 21 of 23)	30933.0	NM_001164062	20850.0	Mm.277403	NM_011488	ENSMUSG00000004043	Stat5a	AA959963|STAT5	signal transducer and activator of transcription 5A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127199083-2	chr7	127198983	127199183	+	709.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_144522, exon 9 of 9)	exon (NM_144522, exon 9 of 9)	-3006.0	NM_027353	70233.0	Mm.28050	NM_027353	ENSMUSG00000042502	Cd2bp2	1500011B02Rik|2410024K20Rik|AW048183	CD2 antigen (cytoplasmic tail) binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59082145-4	chr15	59082042	59082242	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146180)	promoter-TSS (NM_001146180)	-116.0	NM_144800	211401.0	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-84846014-2	chr12	84845914	84846114	+	964.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013589, intron 3 of 34)	Tigger7|DNA|TcMar-Tigger	-29788.0	NR_028577	100303738.0	Mm.479389	NR_028577	ENSMUSG00000092130	D030025P21Rik	-	RIKEN cDNA D030025P21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122483318-2	chr8	122483218	122483418	+	616.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_153775)	TTS (NM_153775)	7175.0	NR_152823	66965.0	Mm.482288	NM_153775	ENSMUSG00000049482	Ctu2	2310061F22Rik|C16orf84|Ncs2	cytosolic thiouridylase subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-93235584-2	chr14	93235471	93235671	+	598.666626	f0_balb.idr|f1_c57bl6.idr	intron (NM_001271800, intron 3 of 3)	intron (NM_001271800, intron 3 of 3)	655098.0	NM_001271800	211712.0	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding	0.75201986457843	0.574179041248555	0.545679691841227	0.522494954496248	1.5925791206132	1.57385091705346	0.552109044692339	3.05368305660962	4.91396769455462	0.00119925550593712	0.0224355523288464
Merged-chr3-88630125-2	chr3	88630025	88630225	+	813.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001198913, intron 2 of 21)	intron (NM_001198913, intron 2 of 21)	8731.0	NM_001198912	16800.0	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-111511906-2	chr8	111511806	111512006	+	591.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001170742, intron 1 of 25)	B1_Mur4|SINE|Alu	10201.0	NM_001170742	319481.0	Mm.247294	NM_176923	ENSMUSG00000031959	Wdr59	5430401O09Rik|Cdw12	WD repeat domain 59	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28179987-4	chr7	28179883	28180083	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271370)	promoter-TSS (NM_001271370)	-333.0	NM_001271370	13549.0	Mm.57249	NM_010092	ENSMUSG00000002409	Dyrk1b	Mirk	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-52160839-2	chr15	52160739	52160939	+	654.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	120732.0	NM_175503	239435.0	Mm.24204	NM_175503	ENSMUSG00000068522	Aard	A5D3|AV328152	alanine and arginine rich domain containing protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-55293571-4	chr3	55293475	55293675	+	976.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357475, intron 3 of 16)	intron (NM_001357475, intron 3 of 16)	51211.0	NM_001357466	13175.0	Mm.393242	NM_019978	ENSMUSG00000027797	Dclk1	1700113D08Rik|2810480F11Rik|AI836758|Click-I|Cpg16|Dcamkl1|Dcl|Dclk|mKIAA0369	doublecortin-like kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-38371231-2	chr18	38371131	38371331	+	877.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32238.0	NM_011937	26384.0	Mm.22374	NM_011937	ENSMUSG00000052102	Gnpda1	GNPDA|Gnp1|Gnpi|oscillin	glucosamine-6-phosphate deaminase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-21269133-1	chr19	21269033	21269233	+	803.5	f1_balb.idr	Intergenic	Intergenic	-3145.0	NM_009551	22682.0	Mm.292405	NM_009551	ENSMUSG00000024750	Zfand5	2310057A04Rik|5830475F03Rik|AA415485|Za20d2|Zfp216	zinc finger, AN1-type domain 5	protein-coding	0.338271400677453	1.00554610655108	0.354750943968568	0.34858203915107	0.339810922251269	0.89001180065593	0.844437254053097	0.918240573253168	1.23454033183659	0.507008894710979	1
Merged-chr7-83604969-2	chr7	83604869	83605069	+	768.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177695, intron 11 of 22)	intron (NM_177695, intron 11 of 22)	20038.0	NM_177695	233424.0	Mm.486619	NM_177695	ENSMUSG00000038540	Tmc3	9030203A06	transmembrane channel-like gene family 3	protein-coding	0.852117237354135	0.803870287985753	0.313418618753782	0.308398914041143	0.445085516433118	0.813464800328409	0.314853812121957	0.612037922533966	-0.250731634755826	0.889277199683452	1
Merged-chr17-15621205-1	chr17	15621105	15621305	+	641.0	f0_balb.idr	Intergenic	Intergenic	-10583.0	NR_045431	71008.0	Mm.399492	NR_045431		4933401D09Rik	-	RIKEN cDNA 4933401D09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97553080-1	chr11	97552980	97553180	+	591.0	f1_c57bl6.idr	intron (NM_018873, intron 1 of 19)	intron (NM_018873, intron 1 of 19)	22046.0	NM_018873	56013.0	Mm.342665	NM_018873	ENSMUSG00000038453	Srcin1	P140|SNIP|mKIAA1684|p140Cap	SRC kinase signaling inhibitor 1	protein-coding	-1.20406370813143	-1.56956373024278	-1.57884638916872	-1.58647144159385	-1.598104728449	-1.56755213932999	-1.57674499865798	-1.58510656085539	-1.70745470802464	0.626337835847419	1
Merged-chr6-38767953-2	chr6	38767853	38768053	+	886.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010433, intron 2 of 14)	intron (NM_010433, intron 2 of 14)	69358.0	NM_001136065	15258.0	Mm.23790	NM_010433	ENSMUSG00000061436	Hipk2	1110014O20Rik|B230339E18Rik|Stank	homeodomain interacting protein kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-17703888-3	chr16	17703782	17703982	+	904.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285886, intron 2 of 16)	intron (NM_001285886, intron 2 of 16)	19018.0	NM_001285886	94112.0	Mm.208970	NM_033609	ENSMUSG00000012114	Med15	A230074L19Rik|AW536074|Pcqap|mPcqap	mediator complex subunit 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120404678-3	chr8	120404537	120404737	+	858.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-84229.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-91604532-1	chr14	91604432	91604632	+	627.0	f1_balb.idr	Intergenic	Lx5c|LINE|L1	1477641.0	NR_045712	74967.0	Mm.390704	NR_045712	ENSMUSG00000115001	4930474H20Rik	-	RIKEN cDNA 4930474H20 gene	ncRNA	0.275320807323236	0.129771806270796	0.121263679386658	0.733011872730984	0.105104000358671	1.2605009448284	0.336007177585355	0.115785242158328	1.19975253931396	0.537861016530444	1
Merged-chr18-80043384-2	chr18	80043284	80043484	+	596.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-3511.0	NM_053117	93737.0	Mm.24678	NM_053117	ENSMUSG00000056214	Pard6g	2410049N21Rik|Par6a	par-6 family cell polarity regulator gamma	protein-coding	2.05988850700589	0.69962628897653	2.1399190265943	0.664908777021019	1.03789925295905	0.703890394619271	1.46805382336765	0.667630416851556	-1.87720428392054	0.212578278834044	0.702047781144169
Merged-chr17-45551470-2	chr17	45551370	45551570	+	704.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1793.0	NM_001013749	210573.0	Mm.329064	NM_001013749	ENSMUSG00000096847	Tmem151b	Gm323	transmembrane protein 151B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152625065-5	chr1	152624890	152625090	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_016846, exon 1 of 18)	exon (NM_016846, exon 1 of 18)	227.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-107961538-3	chr5	107961528	107961728	+	906.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026062, intron 1 of 4)	intron (NM_026062, intron 1 of 4)	25449.0	NM_026062	67266.0	Mm.277897	NM_026062	ENSMUSG00000029270	Fam69a	2900024C23Rik|AI315274	family with sequence similarity 69, member A	protein-coding	-1.84329857115688	-1.81314878319164	-1.67880572530269	-1.82975575063909	-1.84118211178869	-1.81117297321283	-1.82020231564948	-1.68495454493044	0.0376840119903871	0.991491645451152	1
Merged-chr4-107939304-2	chr4	107939204	107939404	+	573.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14628.0	NR_131071	77223.0	Mm.401926	NR_131071	ENSMUSG00000086713	4930407G08Rik	-	RIKEN cDNA 4930407G08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-43755626-4	chr11	43755522	43755722	+	987.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-7649.0	NM_133795	66827.0	Mm.271974	NM_133795	ENSMUSG00000041278	Ttc1	4833412C19Rik|C79328|TPR1	tetratricopeptide repeat domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-85525194-4	chr11	85525085	85525285	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138681, intron 16 of 25)	intron (NM_138681, intron 16 of 25)	172021.0	NM_001166643	192197.0	Mm.209989	NM_138681	ENSMUSG00000059439	Bcas3	1500019F07Rik|2610028P08Rik|AU021018|BC028339|K20D4|rudhira	breast carcinoma amplified sequence 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-11256506-2	chr16	11256406	11256606	+	868.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2061.0	NR_035466	100316833.0		NR_035466	ENSMUSG00000088544	Mir1945	mir-1945|mmu-mir-1945	microRNA 1945	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-71864044-4	chr12	71863968	71864168	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026102, intron 1 of 25)	intron (NM_026102, intron 1 of 25)	-25475.0	NM_001286452	208846.0	Mm.87417	NM_026102	ENSMUSG00000034574	Daam1	-	dishevelled associated activator of morphogenesis 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-73804653-4	chr13	73804569	73804769	+	953.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360694, intron 17 of 24)	intron (NM_001360694, intron 17 of 24)	40972.0	NM_011390	20499.0	Mm.275800	NM_011390	ENSMUSG00000017756	Slc12a7	AA408796|D13Ertd261e|Kcc4	solute carrier family 12, member 7	protein-coding	-1.8418762459921	-1.8125357239735	-1.82140854000656	-1.82869693527674	-1.56059678980999	-1.8106129477253	-1.81939992894326	-1.82739231600805	1.3620893379502	0.699511506488145	1
Merged-chr19-46960404-3	chr19	46960317	46960517	+	818.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164363, intron 1 of 17)	ID4_|SINE|ID	1934.0	NM_029810	76952.0	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	1.30988456993364	1.62890851642734	0.651205159395905	0.640336108509077	1.32373790152624	1.64448254831968	0.654279256306124	0.642248165675274	0.0403661579391632	0.979906151036856	0.998431161219273
Merged-chr2-164454256-2	chr2	164454157	164454357	+	589.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6714.0	NM_025575	66460.0	Mm.44218	NM_025575	ENSMUSG00000045503	Sys1	2610042O14Rik|AI266964|C87389	SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)	protein-coding	-0.955861266431766	-0.939312647090745	-0.949627244197155	-0.303288209597	-0.955282438204586	-0.740615642643367	-0.948954731844904	-0.951561093566521	-1.95890783655533	0.523841026496453	1
Merged-chr8-117068137-2	chr8	117067974	117068174	+	568.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_029686, intron 6 of 42)	intron (NM_029686, intron 6 of 42)	14375.0	NM_029686	76645.0	Mm.159753	NM_029686	ENSMUSG00000034416	Pkd1l2	1700126L06Rik	polycystic kidney disease 1 like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-30614589-3	chr15	30614534	30614734	+	765.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355502, intron 3 of 21)	intron (NM_001355502, intron 3 of 21)	-424492.0	NR_045186	73784.0	Mm.66947	NR_045186	ENSMUSG00000115474	4930430F21Rik	-	RIKEN cDNA 4930430F21 gene	ncRNA	1.26892577382416	1.13800877720492	2.67147070519172	1.07978497578846	2.46968325158868	1.66760477781033	1.95513853669322	2.87042601190132	1.31433791598769	0.24024401230809	0.736569477638593
Merged-chr5-139826912-4	chr5	139826804	139827004	+	985.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356963)	promoter-TSS (NM_001356963)	-10.0	NM_025604	66506.0	Mm.29070	NM_025604	ENSMUSG00000029551	Psmg3	1810042K04Rik|4930403H09Rik|AI303239	proteasome (prosome, macropain) assembly chaperone 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-35495651-4	chr2	35495551	35495751	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1E3|LTR|ERVL-MaLR	-34202.0	NM_001145821	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-109029734-4	chr3	109029627	109029827	+	715.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2120.0	NM_001163567	329739.0	Mm.69013	NM_001163567	ENSMUSG00000040339	Fam102b	1600010D10Rik|B430201A12Rik	family with sequence similarity 102, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56875881-2	chr17	56875781	56875981	+	548.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030141, intron 1 of 13)	B4A|SINE|B4	248.0	NM_030141	78625.0	Mm.160106	NM_030141	ENSMUSG00000024209	1700061G19Rik	1700026H02|AI507598	RIKEN cDNA 1700061G19 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-34464641-4	chr19	34464558	34464758	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	10477.0	NM_009890	12642.0	Mm.30824	NM_009890	ENSMUSG00000050370	Ch25h	AI462618|m25OH	cholesterol 25-hydroxylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-34781592-4	chr2	34781516	34781716	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145522, intron 6 of 7)	intron (NM_145522, intron 6 of 7)	9526.0	NM_022310	14828.0	Mm.330160	NM_022310	ENSMUSG00000026864	Hspa5	AL022860|AU019543|Bip|D2Wsu141e|D2Wsu17e|Grp78|Hsce70|SEZ-7|Sez7|baffled|mBiP	heat shock protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-86657759-2	chr4	86657681	86657881	+	652.0	f0_balb.idr|f1_balb.idr	intron (NM_007408, intron 7 of 7)	intron (NM_007408, intron 7 of 7)	12278.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	-0.191333013299571	-0.451162390342992	-0.273841573420971	-0.458523717352422	-0.463057503474312	0.294895251821397	-0.454400453711712	-0.457963411504941	1.16037582615893	0.648665069781735	1
Merged-chr13-63256959-4	chr13	63256845	63257045	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289926, intron 13 of 15)	intron (NM_001289926, intron 13 of 15)	16916.0	NR_110521	72061.0	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	3.73812696340995	3.21280610208611	3.65109580887522	3.62285195703904	3.59889106008876	3.63793420591663	3.52080543595349	3.32955442368613	-0.0785594944196783	0.878449698674956	0.998431161219273
Merged-chr6-17772681-3	chr6	17772579	17772779	+	774.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022332, intron 1 of 15)	intron (NM_022332, intron 1 of 15)	23509.0	NM_001083315	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-73360467-1	chr17	73360367	73360567	+	555.0	f0_balb.idr	exon (NM_001033444, exon 5 of 23)	exon (NM_001033444, exon 5 of 23)	38829.0	NM_001033444	381122.0	Mm.81496	NM_001033444	ENSMUSG00000043705	Capn13	CANP 13|Gm943	calpain 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-155708742-4	chr4	155708634	155708834	+	964.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026899, intron 1 of 4)	B2_Mm2|SINE|B2	3919.0	NM_026899	68991.0	Mm.294770	NM_026899	ENSMUSG00000029038	Ssu72	1190002E22Rik|1500011L16Rik|2610101M12Rik	Ssu72 RNA polymerase II CTD phosphatase homolog (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-26976050-4	chr8	26975952	26976152	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1284.0	NM_001101502	353310.0	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-31111689-1	chr17	31111589	31111789	+	1000.0	f1_c57bl6.idr	intron (NM_009593, intron 13 of 14)	intron (NM_009593, intron 13 of 14)	17922.0	NM_011575	21786.0	Mm.4641	NM_011575	ENSMUSG00000024029	Tff3	ITF|mITF	trefoil factor 3, intestinal	protein-coding	1.24996066093784	1.79809212423917	2.5935001366452	1.07113847826113	2.16649866691539	2.7086014627084	1.56838117506152	1.31738195711914	0.545112081064466	0.626220234471264	0.980912176761026
Merged-chr4-32213662-2	chr4	32213562	32213762	+	623.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus1|LINE|L1	-203773.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	1.50440425674559	1.95441486312763	1.89119835136832	1.95354898259095	1.51425500283511	1.96837758189504	1.90533122350992	1.96328810150692	0.0367759841730976	0.970202859454296	0.998431161219273
Merged-chr16-39881761-1	chr16	39881661	39881861	+	801.5	f0_balb.idr	Intergenic	Intergenic	-102603.0	NM_001361282	268890.0	Mm.310524	NM_175548	ENSMUSG00000061080	Lsamp	5430428I19|AW046674|B130007O04Rik|D930023J12Rik|Gm29907|Lam|Lamp	limbic system-associated membrane protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-120101210-3	chr2	120101112	120101312	+	721.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133838, intron 4 of 5)	intron (NM_133838, intron 4 of 5)	53363.0	NM_133838	98878.0	Mm.132226	NM_133838	ENSMUSG00000027293	Ehd4	2210022F10Rik|AI197390|AI846352|AV006278|Past2	EH-domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-46077891-8	chr11	46077834	46078034	+	975.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291890, intron 3 of 22)	intron (NM_001291890, intron 3 of 22)	21950.0	NM_001291891	11492.0	Mm.89940	NM_009616	ENSMUSG00000011256	Adam19	AL024287|MADDAM|MTLNB|Mltnb	a disintegrin and metallopeptidase domain 19 (meltrin beta)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-48131776-1	chr4	48131676	48131876	+	546.0	f1_c57bl6.idr	5' UTR (NM_026343, exon 2 of 8)	5' UTR (NM_026343, exon 2 of 8)	6857.0	NM_026343	67727.0	Mm.171334	NM_026343	ENSMUSG00000061455	Stx17	4833418L03Rik|6330411F21Rik|9030425C21Rik|AW048351	syntaxin 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-128981313-4	chr4	128981198	128981398	+	956.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11926.0	NM_016895	11637.0	Mm.29460	NM_016895	ENSMUSG00000028792	Ak2	Ak-2|D4Ertd220e	adenylate kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-11905504-2	chr15	11905404	11905604	+	610.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_008728, exon 1 of 8)	exon (NM_008728, exon 1 of 8)	170.0	NM_008728	18162.0	Mm.25259	NM_008728	ENSMUSG00000022206	Npr3	ANP-C|ANPR-C|EF-2|NPR-C|lgj|stri	natriuretic peptide receptor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-46862750-1	chr10	46862650	46862850	+	588.0	f1_balb.idr	Intergenic	L1_Mus2|LINE|L1	618001.0	NR_028276	108637.0		NR_028276	ENSMUSG00000096263	Snord14c	Gm23107|Rnu14|U14	small nucleolar RNA, C/D box 14C	snoRNA	0.484892761783082	0.0427732235160569	0.0375632093258411	0.0335494934068621	0.398838995726253	0.64947539601652	0.0387115526498574	0.195571316506104	1.3145969741177	0.531986280210003	1
Merged-chr8-10990971-3	chr8	10990867	10991067	+	745.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081212, intron 1 of 1)	intron (NM_001081212, intron 1 of 1)	-16883.0	NR_046017	619321.0	Mm.403007	NR_046017	ENSMUSG00000096938	9530052E02Rik	-	RIKEN cDNA 9530052E02 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4559932-4	chr16	4559821	4560021	+	980.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031182)	promoter-TSS (NM_031182)	-201.0	NM_031182	83383.0	Mm.273210	NM_031182	ENSMUSG00000005718	Tfap4	AI642933|AP-4|D930048N17Rik|Tcfap4|bHLHc41	transcription factor AP4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-85758178-1	chr1	85758078	85758278	+	680.0	f0_balb.idr	Intergenic	Intergenic	6230.0	NR_106172	102466882.0		NR_106172	ENSMUSG00000098634	Mir8096	Gm27479|mmu-mir-8096	microRNA 8096	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-66437534-4	chr18	66437434	66437634	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21070.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-122553269-3	chr10	122553169	122553369	+	727.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16622.0	NR_040616	319272.0	Mm.411763	NR_040616	ENSMUSG00000112095	A130077B15Rik	-	RIKEN cDNA A130077B15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-5688638-4	chr18	5688471	5688671	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360981, intron 2 of 8)	MTD|LTR|ERVL-MaLR	95924.0	NM_001360981	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	1.67928873359834	1.22163859386717	2.51227989994067	2.35180942372918	1.69321468242068	1.22799451087242	2.5329253704515	2.36455283260281	0.0362425294343158	0.973126007678385	0.998431161219273
Merged-chr6-37442355-4	chr6	37442243	37442443	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178661)	promoter-TSS (NM_178661)	-195.0	NM_178661	208647.0	Mm.169929	NM_178661	ENSMUSG00000038648	Creb3l2	BBF2H7|C530025K05Rik|SCIRR69	cAMP responsive element binding protein 3-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-27296740-3	chr16	27296645	27296845	+	919.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10896.0	NM_198112	239790.0	Mm.390880	NM_198112	ENSMUSG00000052276	Ostn	Ostc	osteocrin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-40739175-3	chr3	40739085	40739285	+	867.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6428.0	NM_011020	18415.0	Mm.39330	NM_011020	ENSMUSG00000025757	Hspa4l	94kDa|AI461691|APG-1|Osp94	heat shock protein 4 like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71255315-2	chr17	71255215	71255415	+	727.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357337, intron 6 of 7)	intron (NM_001357337, intron 6 of 7)	50661.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	0.415263492846434	1.15708903270724	0.438211893205438	0.429681053005841	0.744721891867978	1.49891742020659	0.440630470672218	1.06241864886613	1.62460827281515	0.351150545332641	0.851820510089169
Merged-chr3-52198653-4	chr3	52198557	52198757	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69680.0	NM_019739	56458.0	Mm.29891	NM_019739	ENSMUSG00000044167	Foxo1	AI876417|Afxh|FKHR|Fkhr1|Foxo1a	forkhead box O1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-33238380-2	chr4	33238280	33238480	+	749.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	10407.0	NM_001033225	108767.0	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-125386844-3	chr10	125386738	125386938	+	771.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57875.0	NM_001358496	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	1.41397476584809	0.66285469473963	0.648414169613569	0.63703765688345	1.59798764664919	0.666064875883587	1.06428559569974	1.8559769718046	1.88176273848776	0.233619437850041	0.729053064502721
Merged-chr2-129363259-2	chr2	129363165	129363365	+	580.0	f0_c57.idr|f1_balb.idr	Intergenic	L1ME4b|LINE|L1	-6637.0	NR_015474	329514.0	Mm.207315	NM_177848	ENSMUSG00000074805	Il1bos	9430083I22|Gm14047	interleukin 1 beta, opposite strand	ncRNA	1.5818444685481	1.00786302838349	1.85275218141515	1.7951266190207	2.07005859270336	1.01265142047589	2.34319267514959	0.972023304283447	0.460871817394963	0.717901596985309	0.998431161219273
Merged-chr6-98971967-2	chr6	98971867	98972067	+	591.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001197321, intron 9 of 17)	intron (NM_001197321, intron 9 of 17)	56331.0	NM_001197322	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-23843537-4	chr18	23843444	23843644	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162941, intron 3 of 7)	intron (NM_001162941, intron 3 of 7)	39574.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-120098904-4	chr9	120098826	120099026	+	831.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6793.0	NM_007720	12776.0	Mm.442098	NM_007720	ENSMUSG00000042262	Ccr8	C-C|C-C CKR-8|CC-CKR-8|CCR-8|CKR-8|Cmkbr8|mCCR8	chemokine (C-C motif) receptor 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-107508120-2	chr10	107508020	107508220	+	814.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-13391.0	NM_008657	17878.0	Mm.11	NM_008657	ENSMUSG00000035923	Myf6	MRF4|bHLHc4|herculin	myogenic factor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-8738407-2	chr3	8738307	8738507	+	824.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-71369.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-19189502-2	chr3	19189402	19189602	+	632.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356295, intron 1 of 7)	RMER19B|LTR|ERVK	1207.0	NM_001356295	67472.0	Mm.45125	NM_026182	ENSMUSG00000027601	Mtfr1	1300002C08Rik|1700080D04Rik|2810026O10Rik|4930579E05Rik|Chppr|Fam54a2	mitochondrial fission regulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-73597963-2	chr15	73597863	73598063	+	838.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357747, intron 2 of 7)	intron (NM_001357747, intron 2 of 7)	-1437.0	NM_001168255	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-42387871-2	chr6	42387771	42387971	+	768.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12367.0	NM_001001452	387514.0	Mm.377921	NM_001001452	ENSMUSG00000046652	Tas2r143	Gm1404|Tas2r43|mt2r36	taste receptor, type 2, member 143	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-75273744-4	chr9	75273639	75273839	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081322, intron 19 of 40)	intron (NM_001081322, intron 19 of 40)	-32549.0	NM_010313	14697.0	Mm.17604	NM_010313	ENSMUSG00000032192	Gnb5	GBS|Gbeta5|flr	guanine nucleotide binding protein (G protein), beta 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180417336-4	chr1	180417235	180417435	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081175, intron 4 of 7)	intron (NM_001081175, intron 4 of 7)	66169.0	NM_001081227	381310.0	Mm.44791	NM_001081227	ENSMUSG00000053963	Stum	6330403A02Rik|Gm10001|R75555	mechanosensory transduction mediator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-121596772-4	chr5	121596680	121596880	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	-2956.0	NM_001308450	11669.0	Mm.284446	NM_009656	ENSMUSG00000029455	Aldh2	AHD-M1|ALDH-E2|ALDHI|Ahd-5|Ahd5	aldehyde dehydrogenase 2, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-33820171-1	chr17	33820071	33820271	+	1000.0	f1_c57bl6.idr	intron (NM_030697, intron 7 of 10)	B4A|SINE|B4	4391.0	NM_016844	54127.0	Mm.352374	NM_016844	ENSMUSG00000067288	Rps28	-	ribosomal protein S28	protein-coding	-0.167461943126027	-0.151789138379011	0.0245337067040045	-0.160876523702557	0.498579452087015	0.48461035013118	-0.155784579977537	-0.160184290400623	3.03321107817534	0.194312668224566	1
Merged-chr12-3825203-3	chr12	3825086	3825286	+	893.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271753, intron 1 of 22)	UCON10|Unknown|Unknown	18026.0	NM_001271753	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-15826064-3	chr17	15825993	15826193	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_178615, exon 1 of 3)	exon (NM_178615, exon 1 of 3)	493.0	NM_178615	68799.0	Mm.293466	NM_178615	ENSMUSG00000048027	Rgmb	1110059F19Rik|DRAGON	repulsive guidance molecule family member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-95507391-3	chr11	95507318	95507518	+	887.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7147.0	NM_130858	104079.0	Mm.22970	NM_130858	ENSMUSG00000046719	Nxph3	-	neurexophilin 3	protein-coding	1.10909164068492	1.89724532675202	2.34940390301247	2.62146831037187	1.53528100486613	1.21695112107025	2.72342314635607	2.2912511794907	-0.068460381599934	0.950106353932342	0.998431161219273
Merged-chr11-60776837-4	chr11	60776731	60776931	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175491)	promoter-TSS (NM_175491)	534.0	NM_009410	21975.0	Mm.10708	NM_009410	ENSMUSG00000002814	Top3a	-	topoisomerase (DNA) III alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-114948985-3	chr14	114948852	114949052	+	997.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3004.0	NR_126548	74982.0		NR_126548	ENSMUSG00000115372	1700100I10Rik	1700085D13Rik|4930481K08Rik	RIKEN cDNA 1700100I10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71308149-4	chr8	71308020	71308220	+	813.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142322, intron 2 of 39)	intron (NM_001142322, intron 2 of 39)	35406.0	NM_001142323	17925.0	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	1.98818026145994	1.01554244828006	1.23383699942248	2.53124207580953	1.15778355128268	1.28105471271642	1.75555256304879	1.81947188548762	-0.903245774718795	0.443545979893279	0.912075280648966
Merged-chr8-15519942-4	chr8	15519848	15520048	+	968.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	462295.0	NM_008664	17930.0	Mm.272115	NM_008664	ENSMUSG00000031461	Myom2	AW146149	myomesin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25132526-4	chr7	25132420	25132620	+	981.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163555)	promoter-TSS (NM_001163555)	-60.0	NM_001163554	18987.0	Mm.76683	NM_011138	ENSMUSG00000008496	Pou2f2	Oct-2|Oct2a|Oct2b|Oct2c|Oct2d|Otf-2|Otf2	POU domain, class 2, transcription factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-115806127-4	chr10	115806015	115806215	+	961.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-11169.0	NM_001168680	216350.0	Mm.22270	NM_146010	ENSMUSG00000034127	Tspan8	C76990|E330007O21Rik|Tm4sf3	tetraspanin 8	protein-coding	2.081864584912	2.32743984514157	2.61142626615261	3.13910106174716	2.09848062723164	2.18481500989053	2.52309366800452	2.44688002311635	-0.622134895091322	0.43783796346675	0.908612234382228
Merged-chr10-80250206-2	chr10	80250106	80250306	+	563.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029272, intron 1 of 7)	ID_B1|SINE|B4	754.0	NM_029272	75406.0	Mm.28712	NM_029272	ENSMUSG00000020153	Ndufs7	1010001M04Rik	NADH dehydrogenase (ubiquinone) Fe-S protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-24546012-2	chr8	24545912	24546112	+	752.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145949, intron 7 of 9)	intron (NM_145949, intron 7 of 9)	30321.0	NM_145949	209176.0	Mm.219580	NM_145949	ENSMUSG00000031549	Ido2	AI265623|C230043N17Rik|Ido-2|Indol1	indoleamine 2,3-dioxygenase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-132255036-2	chr2	132254936	132255136	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Kanga1|DNA|TcMar-Tc2	-1856.0	NM_011045	18538.0	Mm.7141	NM_011045	ENSMUSG00000027342	Pcna	-	proliferating cell nuclear antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-35448348-2	chr2	35448248	35448448	+	664.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010283, intron 1 of 8)	intron (NM_010283, intron 1 of 8)	13101.0	NM_001308299	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33769653-2	chr16	33769553	33769753	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-24384.0	NM_010739	17063.0	Mm.3177	NM_010739	ENSMUSG00000022824	Muc13	114/A10|14/A10|AI159736|Lrrp|Ly64|NJ-1	mucin 13, epithelial transmembrane	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-173424635-1	chr1	173424535	173424735	+	741.0	f1_balb.idr	intron (NM_001013779, intron 1 of 8)	B4A|SINE|B4	4031.0	NM_001013779	383619.0	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-41348029-4	chr4	41347931	41348131	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290454)	promoter-TSS (NM_001290454)	-965.0	NM_001355509	67123.0	Mm.289795	NM_023305	ENSMUSG00000028437	Ubap1	2700092A01Rik|NAG20|UBAP-1|Ubap	ubiquitin-associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-79417074-2	chr6	79416974	79417174	+	706.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	385032.0	NR_040301	100504701.0	Mm.400420	NR_040301	ENSMUSG00000108072	Gm20362	-	predicted gene, 20362	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124741500-1	chr6	124741400	124741600	+	1000.0	f0_c57.idr	promoter-TSS (NM_013535)	promoter-TSS (NM_013535)	-421.0	NM_013535	14790.0	Mm.439877	NM_013535	ENSMUSG00000072772	Grcc10	2310033H05Rik|C10	gene rich cluster, C10 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-96691146-4	chr10	96691069	96691269	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	74168.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-62642699-4	chr17	62642604	62642804	+	976.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010109, intron 2 of 3)	intron (NM_010109, intron 2 of 3)	238613.0	NM_207654	13640.0	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-109704713-4	chr8	109704586	109704786	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286393)	promoter-TSS (NM_001286393)	-860.0	NM_001286393	75871.0	Mm.180410	NM_029468	ENSMUSG00000031728	Zfp821	4930566A11Rik|Znf821	zinc finger protein 821	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28972863-4	chr7	28972745	28972945	+	676.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028659, intron 6 of 7)	intron (NM_028659, intron 6 of 7)	9043.0	NM_001285943	73830.0	Mm.29714	NM_028659	ENSMUSG00000053565	Eif3k	1200009C21Rik|Eif3s12	eukaryotic translation initiation factor 3, subunit K	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-130795673-2	chr4	130795573	130795773	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011520, intron 1 of 4)	intron (NM_011520, intron 1 of 4)	3136.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30240219-2	chr7	30240117	30240317	+	804.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_146186)	TTS (NM_146186)	-3452.0	NM_001289817	381867.0	Mm.483986	NM_001289817	ENSMUSG00000100512	Ovol3	Gm1903|movo3	ovo like zinc finger 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-57527258-2	chr6	57527158	57527358	+	683.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175523, intron 1 of 6)	Lx8|LINE|L1	8168.0	NM_175523	243382.0	Mm.396893	NM_175523	ENSMUSG00000037826	Ppm1k	2900063A19Rik|A930026L03Rik|PP2Cm	protein phosphatase 1K (PP2C domain containing)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-88902883-2	chr6	88902783	88902983	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011906, intron 1 of 11)	intron (NM_011906, intron 1 of 11)	632.0	NM_011906	24100.0	Mm.284480	NM_011906	ENSMUSG00000002871	Tpra1	40kDa|Gpr175|Tpra40	transmembrane protein, adipocyte asscociated 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-42977299-4	chr5	42977201	42977401	+	937.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-256162.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-143917784-4	chr1	143917682	143917882	+	995.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	86367.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34261660-4	chr17	34261510	34261710	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1617.0	NM_207105	14961.0	Mm.254067	NM_207105	ENSMUSG00000073421	H2-Ab1	AI845868|Abeta|H-2Ab|H2-Ab|I-Abeta|IAb|Ia-2|Ia2|Rmcs1	histocompatibility 2, class II antigen A, beta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-105574244-4	chr10	105574057	105574257	+	762.424988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_038032)	promoter-TSS (NR_038032)	322.0	NM_177368	278279.0	Mm.25225	NM_177368	ENSMUSG00000036019	Tmtc2	8430438D04Rik|D330034A10Rik	transmembrane and tetratricopeptide repeat containing 2	protein-coding	0.392355568632159	0.444527573368608	1.82236854115587	1.01482368095354	0.395789158289578	0.448163705838858	1.84245734147919	0.417272873148139	-0.305308927374573	0.925837453452198	0.998431161219273
Merged-chr14-74848332-4	chr14	74848234	74848434	+	972.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033439, intron 2 of 19)	intron (NM_001033439, intron 2 of 19)	99543.0	NM_001252132	380916.0	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-21327932-2	chr5	21327832	21328032	+	614.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_029195, intron 4 of 18)	intron (NM_029195, intron 4 of 18)	-44741.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-97187886-4	chr13	97187804	97188004	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010422, intron 5 of 13)	intron (NM_010422, intron 5 of 13)	10453.0	NM_010422	15212.0	Mm.27816	NM_010422	ENSMUSG00000021665	Hexb	-	hexosaminidase B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-87213374-2	chr1	87213274	87213474	+	935.8333130000001	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347083)	promoter-TSS (NM_001347083)	-537.0	NM_001347083	26987.0	Mm.227183	NM_023314	ENSMUSG00000026254	Eif4e2	2700069E09Rik|AI036339|AV129531|D0H0S6743E|Eif4el3	eukaryotic translation initiation factor 4E member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-120953948-2	chr4	120953848	120954048	+	864.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2247.0	NM_001005788	381549.0	Mm.331840	NM_001005788	ENSMUSG00000064141	Zfp69	Gm1029|Krab2|Zfp63	zinc finger protein 69	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-24639339-2	chr10	24639239	24639439	+	551.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008813, exon 25 of 25)	3' UTR (NM_008813, exon 25 of 25)	43897.0	NM_010217	14219.0	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-27676541-2	chr15	27676441	27676641	+	833.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_198301, intron 1 of 6)	intron (NM_198301, intron 1 of 6)	5001.0	NM_001242424	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-56161030-4	chr9	56160905	56161105	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019793)	promoter-TSS (NM_019793)	65.0	NM_019793	56434.0	Mm.28484	NM_019793	ENSMUSG00000032324	Tspan3	1700055K04Rik|TM4-A|Tm4sf8	tetraspanin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-81065057-4	chr17	81064956	81065156	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028138)	promoter-TSS (NM_028138)	29.0	NM_028138	72167.0	Mm.273257	NM_028138	ENSMUSG00000024246	Thumpd2	2810025A12Rik	THUMP domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-98812989-2	chr7	98812889	98813089	+	612.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22123.0	NM_001285794	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70505074-4	chr8	70504968	70505168	+	825.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_018827)	TTS (NM_018827)	1358.0	NR_151646	66462.0	Mm.28242	NM_025577	ENSMUSG00000058833	Rex1bd	2810428I15Rik	required for excision 1-B domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101235975-2	chr15	101235875	101236075	+	971.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10789.0	NR_045328	380977.0	Mm.399924	NR_045326	ENSMUSG00000097915	A330009N23Rik	-	RIKEN cDNA A330009N23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-4471344-3	chr7	4471254	4471454	+	925.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028416)	promoter-TSS (NR_028416)	-470.0	NR_028416	320749.0	Mm.396688	NR_028416		D630041G03Rik	-	RIKEN cDNA D630041G03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-28914384-3	chr16	28914301	28914501	+	902.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177718, intron 1 of 1)	intron (NM_177718, intron 1 of 1)	15297.0	NM_177718	239796.0	Mm.155887	NM_177718	ENSMUSG00000051065	Mb21d2	1600021P15Rik|A430031N04|C87006	Mab-21 domain containing 2	protein-coding	5.57227161469132	5.07698071693052	4.52899781542324	4.49919627799239	3.85966510321785	3.34804601943857	2.77646523383472	2.83063759485848	-2.24649777092029	3.17175412948196e-06	0.000172975936570566
Merged-chr2-121484665-2	chr2	121484557	121484757	+	980.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10634.0	NM_001081975	100034361.0	Mm.270393	NM_001081975	ENSMUSG00000048222	Mfap1b	-	microfibrillar-associated protein 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-119808161-2	chr13	119808061	119808261	+	808.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-17039.0	NM_001302550	72465.0	Mm.139115	NM_028245	ENSMUSG00000094870	Zfp131	2610109I01Rik|AW558871|Znf131	zinc finger protein 131	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-106296935-4	chr9	106296828	106297028	+	903.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027354, intron 7 of 10)	intron (NM_027354, intron 7 of 10)	15867.0	NM_027354	70235.0	Mm.23054	NM_027354	ENSMUSG00000023345	Poc1a	2510040D07Rik|Wdr51a|cha	POC1 centriolar protein A	protein-coding	5.74075496157818	5.34354351626064	5.11975282733103	4.9571984923557	5.21065832405829	4.07188860523579	4.88410235566652	4.78803038112147	-0.611947576735133	0.0789149810101134	0.427523453714332
Merged-chr2-151979328-2	chr2	151979228	151979428	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146127, intron 1 of 1)	MIRc|SINE|MIR	891.0	NM_146127	73847.0	Mm.272444	NM_028666	ENSMUSG00000027459	Fam110a	1700008J10Rik|5430432M24Rik|AI747080	family with sequence similarity 110, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-53083452-2	chr2	53083352	53083552	+	919.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 9 of 26)	B2_Mm2|SINE|B2	107735.0	NM_018785	56194.0	Mm.257474	NM_018785	ENSMUSG00000061136	Prpf40a	2810012K09Rik|FBP-11|FBP11|Fnbp11|Fnbp3	pre-mRNA processing factor 40A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139324280-3	chr5	139324184	139324384	+	896.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172723, intron 1 of 10)	intron (NM_172723, intron 1 of 10)	1180.0	NM_172723	231821.0	Mm.297819	NM_172723	ENSMUSG00000056413	Adap1	4930431P11Rik|Centa1|GC1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-81262992-3	chr3	81262881	81263081	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	226565.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	3.76103513263082	3.33067923489349	3.96198886664231	4.24043525761601	2.41509662430525	2.58781863823759	2.3080909803313	1.48901633854133	-2.74611819718025	4.6578804477447e-05	0.00165139545515189
Merged-chr7-143906624-1	chr7	143906524	143906724	+	890.3333130000001	f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	-26491.0	NR_105830	102465217.0		NR_105830	ENSMUSG00000099321	Mir6404	Gm28014|mmu-mir-6404	microRNA 6404	ncRNA	3.41013648809427	4.07012356381613	4.0969679633153	3.98973912616518	3.05734658015254	2.49740173237654	3.22934242549569	1.59653260244206	-1.84934700402814	0.00354217495877854	0.051039649906435
Merged-chr12-4817466-4	chr12	4817348	4817548	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025323)	promoter-TSS (NM_025323)	-160.0	NM_025323	66055.0	Mm.102627	NM_025323	ENSMUSG00000037361	Sf3b6	0610009D07Rik|6030419K15Rik|AV001342|Sf3b14	splicing factor 3B, subunit 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-52687567-3	chr12	52687489	52687689	+	839.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11794.0	NM_198111	238161.0	Mm.310822	NM_198111	ENSMUSG00000061603	Akap6	AI482140|Akapalpha|Akapbeta|PRKA	A kinase (PRKA) anchor protein 6	protein-coding	3.25350366653644	4.89494011445663	4.31312430032919	4.2507920900463	3.60618569365626	3.88274337773434	4.1759768878626	3.99268424412645	-0.4881669860495	0.312429602932567	0.813718605496006
Merged-chr6-6281407-2	chr6	6281307	6281507	+	785.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_136906)	TTS (NR_136906)	32748.0	NR_136905	101056138.0	Mm.389085	NR_136904	ENSMUSG00000093482	Gm20619	-	predicted gene 20619	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-50419057-3	chr17	50418945	50419145	+	904.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MuRRS4-int|LTR|ERV1	-90502.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	1.5718556188397	2.08726264800782	0.791587680844723	1.45291640976664	1.67718801630005	0.812265188548576	0.795359197578766	0.997720546127402	-1.45577247078935	0.300964311517961	0.802318873409678
Merged-chr9-69529307-2	chr9	69529207	69529407	+	586.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	72363.0	NR_037296	100526560.0		NR_037296	ENSMUSG00000093042	Mir3109	mir-3109|mmu-mir-3109	microRNA 3109	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125215499-4	chr6	125215410	125215610	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009496)	promoter-TSS (NM_009496)	-71.0	NM_001080557	22317.0	Mm.32321	NM_009496	ENSMUSG00000030337	Vamp1	Syb-1|Syb1|VAMP-1|lew	vesicle-associated membrane protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28133481-2	chr17	28133381	28133581	+	721.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_039557, intron 3 of 3)	intron (NR_039557, intron 3 of 3)	-9045.0	NM_001004366	268935.0	Mm.258491	NM_001004366	ENSMUSG00000038677	Scube3	CEGF3|D030038I21Rik	signal peptide, CUB domain, EGF-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36522855-2	chr18	36522755	36522955	+	665.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	-5297.0	NM_172830	240215.0	Mm.135463	NM_172830	ENSMUSG00000024485	Slc4a9	AE4|D630003B07|D630024F24Rik	solute carrier family 4, sodium bicarbonate cotransporter, member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70079732-2	chr14	70079632	70079832	+	656.333374	f1_balb.idr|f1_c57bl6.idr	exon (NM_001289925, exon 3 of 3)	exon (NM_001289925, exon 3 of 3)	1937.0	NM_001289927	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-87703386-2	chr16	87703286	87703486	+	946.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007520, intron 1 of 4)	intron (NM_007520, intron 1 of 4)	4432.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-34682247-4	chr6	34682141	34682341	+	947.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347100, intron 2 of 13)	intron (NM_001347100, intron 2 of 13)	-27203.0	NM_145575	109624.0	Mm.308134	NM_145575	ENSMUSG00000029761	Cald1	4833423D12Rik|AI195384|AV071549|AW536160|C920027I18Rik	caldesmon 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19843766-4	chr7	19843667	19843867	+	957.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8236.0	NM_001270489	100502736.0	Mm.445354	NM_001270489	ENSMUSG00000092216	Gm19345	-	predicted gene, 19345	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118270442-4	chr11	118270325	118270525	+	944.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033528, intron 13 of 20)	intron (NM_001033528, intron 13 of 20)	19819.0	NM_001033528	72344.0	Mm.232293	NM_001033528	ENSMUSG00000033909	Usp36	2700002L06Rik|mKIAA1453	ubiquitin specific peptidase 36	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-79996446-4	chr10	79996353	79996553	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 1 of 4)	intron (NR_038088, intron 1 of 4)	-1155.0	NM_001347081	27403.0	Mm.103351	NM_013850	ENSMUSG00000035722	Abca7	ABCX|Abc51	ATP-binding cassette, sub-family A (ABC1), member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-86972659-2	chr10	86972559	86972759	+	591.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_138673, intron 6 of 68)	intron (NM_138673, intron 6 of 68)	35283.0	NM_138673	192188.0	Mm.279611	NM_138673	ENSMUSG00000035459	Stab2	FEEL-2|FELL|MFEEL-2|STAB-2	stabilin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-64368208-2	chr13	64368102	64368302	+	833.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_009984, exon 3 of 8)	exon (NM_009984, exon 3 of 8)	2318.0	NM_009984	13039.0	Mm.930	NM_009984	ENSMUSG00000021477	Ctsl	1190035F06Rik|CatL|Ctsl1|MEP|fs|nkt	cathepsin L	protein-coding	2.53550000433359	1.38467369771213	2.18147836885925	1.31278288379573	2.71545994343627	3.12793153233564	2.86656109056091	2.38815683052603	1.76911489599446	0.05194750783161	0.333535247394037
Merged-chr7-123500694-2	chr7	123500594	123500794	+	709.200012	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081329)	promoter-TSS (NM_001081329)	-68.0	NM_001081329	210162.0	Mm.135397	NM_175435	ENSMUSG00000030757	Zkscan2	9430065N20Rik|AW493225|Zfp694	zinc finger with KRAB and SCAN domains 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-83768749-4	chr8	83768652	83768852	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11B|LTR|ERVK	-27441.0	NM_001163031	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	1.97598897861591	3.82335745434683	2.94608429806067	3.16012607748776	2.72784320154329	3.9120348840891	3.59636269485392	2.87464582686392	0.379390906835268	0.580806878473786	0.966599221005409
Merged-chr17-81703944-3	chr17	81703840	81704040	+	983.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 1 of 8)	intron (NR_104580, intron 1 of 8)	34447.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-143086520-3	chr7	143086406	143086606	+	888.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020277, intron 5 of 24)	intron (NM_020277, intron 5 of 24)	8136.0	NM_020277	56843.0	Mm.286668	NM_020277	ENSMUSG00000009246	Trpm5	9430099A16Rik|LTrpC-5|Ltrpc5|Mtr1	transient receptor potential cation channel, subfamily M, member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115164592-4	chr11	115164513	115164713	+	962.3875119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012030, intron 1 of 5)	intron (NM_012030, intron 1 of 5)	1272.0	NM_012030	26941.0	Mm.27842	NM_012030	ENSMUSG00000020733	Slc9a3r1	EBP-50|NHE-RF|NHERF-1|NHERF1	solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 1	protein-coding	3.11510280692236	4.27488513943784	2.47504016913663	3.85150035018446	3.59008768314243	3.03090858123292	1.56495673487506	2.23432728541487	-1.20743094857569	0.113120184873631	0.52650449242973
Merged-chr15-88818005-2	chr15	88817905	88818105	+	700.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001142357, intron 1 of 9)	B1_Mus1|SINE|Alu	1313.0	NM_001142357	223774.0	Mm.41512	NM_145477	ENSMUSG00000035845	Alg12	ECM39	asparagine-linked glycosylation 12 (alpha-1,6-mannosyltransferase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43975069-4	chr4	43974970	43975170	+	913.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027450, intron 4 of 4)	intron (NM_027450, intron 4 of 4)	-8434.0	NM_001002787	442829.0	Mm.348215	NM_001002787	ENSMUSG00000070999	Ccin	4933417A14Rik	calicin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-37204173-4	chr3	37204058	37204258	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21273.0	NR_153188	102639848.0	Mm.424479	NR_153188		Gm12532	-	predicted gene 12532	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-34387994-2	chr12	34387894	34388094	+	855.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271386, intron 13 of 27)	URR1B|DNA|hAT-Charlie	140895.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105367818-2	chr8	105367718	105367918	+	604.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081332, intron 15 of 15)	intron (NM_001081332, intron 15 of 15)	-7563.0	NM_001081333	102075.0	Mm.32034	NM_175321	ENSMUSG00000014782	Plekhg4	4931414L13Rik|AI448583|mFLJ00068	pleckstrin homology domain containing, family G (with RhoGef domain) member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-22349322-2	chr16	22349222	22349422	+	732.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER5B|DNA|hAT-Charlie	54334.0	NR_153764	100043507.0		NR_153764		Gng5-ps	Gm15776	G protein subunit gamma 5, pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-75609360-2	chr7	75609260	75609460	+	636.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_029332, exon 7 of 37)	exon (NM_029332, exon 7 of 37)	153826.0	NM_029332	75547.0	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-121016651-2	chr4	121016551	121016751	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133716, intron 1 of 9)	intron (NM_133716, intron 1 of 9)	596.0	NM_133716	69780.0	Mm.271819	NM_133716	ENSMUSG00000032870	Smap2	1810031K02Rik|AA408614|Smap1l	small ArfGAP 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3728876-4	chr4	3728776	3728976	+	761.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 1 of 12)	intron (NM_001111096, intron 1 of 12)	13912.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	0.391809855697799	0.146198197194583	0.386037731369753	0.354426862708965	-0.0461443958879962	-0.0323746496181597	-0.0368808271522233	-0.0407067762959513	-3.80420469464899	0.072061455253098	1
Merged-chr1-92980354-2	chr1	92980254	92980454	+	574.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_022320, intron 1 of 1)	intron (NM_022320, intron 1 of 1)	1451.0	NM_022320	64095.0	Mm.152780	NM_022320	ENSMUSG00000026271	Gpr35	KPG_007	G protein-coupled receptor 35	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-19047581-4	chr10	19047494	19047694	+	937.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32184.0	NM_009397	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-24578793-4	chr5	24578687	24578887	+	948.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1320.0	NM_001190443	27407.0	Mm.21629	NM_013853	ENSMUSG00000028953	Abcf2	0710005O05Rik|Drr3|E430001O06	ATP-binding cassette, sub-family F (GCN20), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-113343916-4	chr6	113343779	113343979	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133926)	promoter-TSS (NM_133926)	43.0	NM_133926	52163.0	Mm.277373	NM_133926	ENSMUSG00000030272	Camk1	AI505105|CaMKIalpha|D6Ertd263e	calcium/calmodulin-dependent protein kinase I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-70099220-4	chr7	70099124	70099324	+	986.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	238598.0	NR_131145	624549.0	Mm.116344	NR_131144	ENSMUSG00000109097	Gm29683	Gm44536	predicted gene, 29683	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-29053119-4	chr2	29053012	29053212	+	970.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166705, intron 1 of 5)	intron (NM_001166705, intron 1 of 5)	1954.0	NM_001166705	329375.0	Mm.425079	NM_001085514	ENSMUSG00000079502	Cfap77	1700101E01Rik|Gm823	cilia and flagella associated protein 77	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-123924945-3	chr8	123924883	123925083	+	721.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172288, intron 12 of 25)	intron (NM_172288, intron 12 of 25)	24282.0	NM_172288	234865.0	Mm.267812	NM_172288	ENSMUSG00000039509	Nup133	mermaid	nucleoporin 133	protein-coding	2.22985924921969	1.66475541530666	1.46088562745579	1.69231352592394	1.50457719946998	1.51618332396131	1.29287098348764	1.57514188644958	-1.10771513344381	0.304850779758183	0.806230636782956
Merged-chr18-9212178-3	chr18	9212083	9212283	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008058)	promoter-TSS (NM_008058)	-673.0	NM_008058	14370.0	Mm.184289	NM_008058	ENSMUSG00000036904	Fzd8	Fz8	frizzled class receptor 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-59238700-2	chr10	59238600	59238800	+	913.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	16778.0	NM_172939	268301.0	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-118690487-2	chr14	118690387	118690587	+	663.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163676, intron 1 of 29)	intron (NM_001163676, intron 1 of 29)	-13556.0	NM_001163675	239273.0	Mm.40537	NM_001033336	ENSMUSG00000032849	Abcc4	ABCC4-N1|D630049P08Rik|MOATB|MRP4	ATP-binding cassette, sub-family C (CFTR/MRP), member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-15625798-2	chr6	15625698	15625898	+	907.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-94863.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-133976258-2	chr7	133976158	133976358	+	675.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007400, intron 6 of 22)	intron (NM_007400, intron 6 of 22)	-193473.0	NM_001286031	101437.0	Mm.199223	NM_133941	ENSMUSG00000030986	Dhx32	3110079L04Rik|4732469F02Rik|AA408140|Ddx32|muDDX32	DEAH (Asp-Glu-Ala-His) box polypeptide 32	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167925175-4	chr2	167925059	167925259	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7168.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5683327-2	chr19	5683227	5683427	+	654.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_144868, exon 10 of 35)	exon (NM_144868, exon 10 of 35)	-4251.0	NR_105953	102465596.0		NR_105953	ENSMUSG00000098568	Mir6987	Gm27891|mmu-mir-6987	microRNA 6987	ncRNA	-0.369421755444154	-0.641374009290437	-0.645347539005701	-0.648420801864181	-0.652775087352273	-0.640479841063662	0.170198846463605	-0.6478834323802	1.83037016334557	0.51990333278248	1
Merged-chr1-34843435-2	chr1	34843335	34843535	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001160235)	promoter-TSS (NM_001160235)	-385.0	NM_001160236	214469.0	Mm.120151	NM_174997	ENSMUSG00000037503	Fam168b	Mani|mKIAA4042	family with sequence similarity 168, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-42274450-3	chr10	42274342	42274542	+	891.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019740, intron 2 of 3)	intron (NM_019740, intron 2 of 3)	2300.0	NM_019740	56484.0	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-49609445-3	chr18	49609346	49609546	+	930.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	86157.0	NR_033785	67321.0	Mm.245802	NR_033785	ENSMUSG00000100297	1700044K03Rik	-	RIKEN cDNA 1700044K03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-56144408-1	chr19	56144308	56144508	+	733.0	f0_balb.idr	Intergenic	Intergenic	-143504.0	NM_001329936	226243.0	Mm.25791	NM_146101	ENSMUSG00000025075	Habp2	AI035669|FSAP|HABP|HGFAL|PHBP	hyaluronic acid binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5208625-2	chr17	5208525	5208725	+	655.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 4 of 19)	intron (NM_001085355, intron 4 of 19)	210142.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-111192109-1	chr5	111192009	111192209	+	900.0	f0_balb.idr	intron (NM_001267622, intron 6 of 22)	intron (NM_001267622, intron 6 of 22)	-138588.0	NM_001301644	56305.0	Mm.200516	NM_019640	ENSMUSG00000050017	Pitpnb	PI-TP-beta	phosphatidylinositol transfer protein, beta	protein-coding	0.174798658082421	-0.0813008154275949	-0.0866621716879728	-0.0908044014344877	-0.096667249641679	0.553347719929251	-0.0854789774558527	0.557313408002852	2.40361430608834	0.301350859531067	1
Merged-chr11-114968939-4	chr11	114968788	114968988	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8471.0	NM_199225	387565.0	Mm.351450	NM_199225	ENSMUSG00000058728	Cd300c	Clm6	CD300C molecule	protein-coding	6.53163756500348	6.34006275275059	6.27956620242572	6.69570440227015	6.84916188843759	6.77264829419294	6.55957114410349	6.50518318415681	0.219262916106076	0.265524446041368	0.768147155667337
Merged-chr19-5460636-4	chr19	5460521	5460721	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253832)	promoter-TSS (NM_001253832)	14.0	NM_021438	58249.0	Mm.329656	NM_021438	ENSMUSG00000024911	Fibp	2010004G08Rik|2010005N21Rik|3010027N18Rik	fibroblast growth factor (acidic) intracellular binding protein	protein-coding	-0.283836678722598	-0.268141725735982	-0.273263741077694	0.385191595738241	-0.282851562873926	-0.266989722268694	-0.272132421925656	0.484788004519644	0.290014737906397	0.910283889333232	1
Merged-chr4-8838906-2	chr4	8838806	8839006	+	665.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355382, intron 15 of 36)	intron (NM_001355382, intron 15 of 36)	87582.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111436676-7	chr12	111436552	111436752	+	978.7261960000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6009.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-56375713-4	chr19	56375597	56375797	+	856.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008733, intron 11 of 41)	B4A|SINE|B4	14341.0	NM_198059	18175.0	Mm.386769	NM_008733	ENSMUSG00000049134	Nrap	-	nebulin-related anchoring protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-63282956-2	chr18	63282856	63283056	+	629.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039485, intron 2 of 53)	MTC|LTR|ERVL-MaLR	104227.0	NM_001039485	667742.0	Mm.158720	NM_172629	ENSMUSG00000041482	Piezo2	5930434P17|9030411M15Rik|9430028L06Rik|Fam38b|Fam38b2	piezo-type mechanosensitive ion channel component 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-92418464-2	chr16	92418364	92418564	+	993.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081549, intron 1 of 3)	ORR1A1-int|LTR|ERVL-MaLR	-18386.0	NM_019466	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-90258295-4	chr9	90258190	90258390	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 1 of 12)	intron (NM_194334, intron 1 of 12)	12479.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-132586065-3	chr2	132585964	132586164	+	915.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7816.0	NM_001355652	74182.0	Mm.211211	NM_027096	ENSMUSG00000027346	Gpcpd1	2310004G06Rik|2310032D16Rik|AU015213|Gde5|Prei4|mKIAA1434	glycerophosphocholine phosphodiesterase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-78199336-2	chr1	78199236	78199436	+	750.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2200.0	NM_008781	18505.0	Mm.1371	NM_008781	ENSMUSG00000004872	Pax3	Pax-3|Sp|Splchl2|splotch	paired box 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-75767084-2	chr10	75766984	75767184	+	768.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-2727.0	NM_172549	104248.0	Mm.257404	NM_172549	ENSMUSG00000020196	Cabin1	A330070M20Rik|Cain|Ppp3in	calcineurin binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-4621341-1	chr12	4621241	4621441	+	547.0	f1_balb.idr	intron (NM_001198969, intron 2 of 16)	L1_Mus2|LINE|L1	28333.0	NM_001198968	20403.0	Mm.341204	NM_011365	ENSMUSG00000020640	Itsn2	AI327390|Ese2|Sh3d1B|Sh3p18|mKIAA1256	intersectin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-109516916-5	chr7	109516858	109517058	+	673.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2237.0	NM_011975	26451.0	Mm.305750	NM_011975	ENSMUSG00000046364	Rpl27a	L27'|L27A|L29	ribosomal protein L27A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53033222-2	chr4	53033122	53033322	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_013454, exon 50 of 50)	3' UTR (NM_013454, exon 50 of 50)	21342.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-107868518-4	chr5	107868397	107868597	+	888.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007964, intron 1 of 17)	CpG	6610.0	NM_007964	14020.0	Mm.35796	NM_007964	ENSMUSG00000011831	Evi5	NB4S	ecotropic viral integration site 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-32743862-2	chr5	32743762	32743962	+	758.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347332, intron 2 of 8)	intron (NM_001347332, intron 2 of 8)	2480.0	NM_001347332	320951.0	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-56217655-1	chr8	56217555	56217755	+	1000.0	f1_balb.idr	Intergenic	Intergenic	-76897.0	NM_008278	15446.0	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	1.74310476243265	2.08376796996336	0.774000969727614	0.760458291811654	1.76063039664012	1.4275396926301	0.777825313466163	0.762843017762802	-0.723095091115177	0.630682363454761	0.981465575333797
Merged-chr7-87926484-9	chr7	87926385	87926585	+	785.523804	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081414, intron 4 of 9)	intron (NM_001081414, intron 4 of 9)	342317.0	NM_001143834	108071.0	Mm.235018	NM_001033224	ENSMUSG00000049583	Grm5	6430542K11Rik|AI850523|Glu5R|Gprc1e|mGluR5|mGluR5b	glutamate receptor, metabotropic 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-59496113-4	chr1	59496018	59496218	+	949.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13971.0	NM_008057	14369.0	Mm.297906	NM_008057	ENSMUSG00000041075	Fzd7	Fz7	frizzled class receptor 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5521749-4	chr17	5521658	5521858	+	936.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	29158.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-100083723-2	chr15	100083623	100083823	+	743.833374	f1_balb.idr|f1_c57bl6.idr	intron (NR_037311, intron 3 of 3)	B1F|SINE|Alu	45059.0	NM_001159361	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-22808012-4	chr8	22807932	22808132	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2378.0	NM_001122820	64933.0	Mm.390023	NM_029505	ENSMUSG00000031539	Ap3m2	5830445E16Rik|AP-3B	adaptor-related protein complex 3, mu 2 subunit	protein-coding	5.14477168639781	4.85773984922051	5.79032549723388	4.33778909472157	4.48378249035938	3.72821300249721	4.87145633349438	4.35947485190285	-0.865567358029346	0.0351592024827525	0.26541953317202
Merged-chr4-101192209-2	chr4	101192109	101192309	+	813.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146145, intron 2 of 24)	intron (NM_146145, intron 2 of 24)	73073.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-123265502-2	chr10	123265402	123265602	+	572.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045514, exon 1 of 6)	non-coding (NR_045514, exon 1 of 6)	1426.0	NM_001252387	268354.0	Mm.51939	NM_182807	ENSMUSG00000044071	Fam19a2	6330575M02|FAM19A2 TAFA-2|Sam2|TAFA2|Tafa-2	family with sequence similarity 19, member A2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70774288-4	chr14	70774177	70774377	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010071)	promoter-TSS (NM_010071)	-104.0	NM_010071	13449.0	Mm.243323	NM_010071	ENSMUSG00000022102	Dok2	DokR|Frip|dok-R	docking protein 2	protein-coding	3.23436022986316	2.81158843267614	3.25922364195872	2.87950893605972	3.38987249878489	3.08878985844439	3.77880416518753	2.7791292482126	0.42131675766165	0.490787547682988	0.934345795476137
Merged-chr5-121382611-2	chr5	121382511	121382711	+	992.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359947, intron 2 of 11)	intron (NM_001359947, intron 2 of 11)	2798.0	NM_001359947	231712.0	Mm.20488	NM_172275	ENSMUSG00000042726	Trafd1	1110008K06Rik|Fln29	TRAF type zinc finger domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-102076502-2	chr5	102076402	102076602	+	617.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-6581.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-58955088-4	chr11	58954975	58955175	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_134309)	promoter-TSS (NR_134309)	390.0	NM_178218	319162.0	Mm.212549	NM_178218	ENSMUSG00000078851	Hist3h2a	-	histone cluster 3, H2a	protein-coding	4.12854142738136	3.87164566882048	3.42096934023306	3.01402315980045	3.98906999510733	4.27369996350736	3.00739394828242	3.03061987874522	0.0232702757329687	0.967561465422298	0.998431161219273
Merged-chr5-92348388-3	chr5	92348283	92348483	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021274, intron 1 of 3)	intron (NM_021274, intron 1 of 3)	506.0	NM_021274	15945.0	Mm.877	NM_021274	ENSMUSG00000034855	Cxcl10	C7|CRG-2|INP10|IP-10|IP10|Ifi10|Scyb10|gIP-10|mob-1	chemokine (C-X-C motif) ligand 10	protein-coding	1.81225216081375	2.8705300996281	1.42761724011114	1.76740833399944	1.10191313852066	2.73608678742337	1.99312070277025	1.92752764785298	-0.0705406404038912	0.946451510446739	0.998431161219273
Merged-chr17-69381566-2	chr17	69381466	69381666	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1609.0	NM_001356283	22666.0	Mm.29434	NM_009547	ENSMUSG00000049672	Zbtb14	ZF5|Zfp161|b2b1982Clo	zinc finger and BTB domain containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-78005659-2	chr9	78005534	78005734	+	870.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46324.0	NM_008103	14531.0	Mm.1400	NM_008103	ENSMUSG00000023333	Gcm1	GCMa|Gcm-rs2|Gcm1-rs1|glide	glial cells missing homolog 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19003320-4	chr7	19003210	19003410	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178757)	promoter-TSS (NM_178757)	-755.0	NM_178757	272359.0	Mm.274237	NM_178757	ENSMUSG00000044030	Irf2bp1	6330414O09Rik|C530033F24	interferon regulatory factor 2 binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88644136-2	chr3	88644036	88644236	+	777.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001198911, exon 21 of 23)	exon (NM_001198911, exon 21 of 23)	9006.0	NM_181817	242093.0	Mm.269130	NM_181817	ENSMUSG00000049741	Rxfp4	GPCR142|Gpr100|Rln3r2|SALPR	relaxin family peptide receptor 4	protein-coding	-0.306899087056831	-0.293802962996356	0.363588537018294	-0.301410640371602	-0.0375280282996475	0.06401359331621	-0.297152588594392	-0.300832495620178	-0.366476921880154	0.881597287191833	1
Merged-chr17-83214295-4	chr17	83214191	83214391	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134117)	promoter-TSS (NM_134117)	-992.0	NM_134117	106522.0	Mm.311974	NM_134117	ENSMUSG00000024247	Pkdcc	AI115348|AW548124|Adtk1|ESTM17|MAd1|Sgk493|Vlk|X83346	protein kinase domain containing, cytoplasmic	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-86885655-3	chr14	86885587	86885787	+	866.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019670, intron 20 of 27)	intron (NM_019670, intron 20 of 27)	255537.0	NM_019670	56419.0	Mm.440585	NM_019670	ENSMUSG00000022021	Diaph3	4930417P13Rik|Dia2|Diap3|Drf3|p134MDia2	diaphanous related formin 3	protein-coding	0.988313196780573	2.23230149354695	2.24413430722281	1.98246384613731	1.20660705584404	2.1418014587807	1.6696622900594	1.0252626188645	-1.00688665689027	0.397642181060115	0.883903683534674
Merged-chr2-25624564-2	chr2	25624464	25624664	+	687.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_007995)	TTS (NM_007995)	-2559.0	NM_001109993	51875.0	Mm.271147	NM_001040130	ENSMUSG00000026939	Tmem141	1110065P14Rik|AI663999|D2Ertd217e	transmembrane protein 141	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-118098155-4	chr10	118098047	118098247	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43640.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	4.90187450609456	4.46052854883395	5.45740058287001	4.93335142247283	4.37910757100658	4.13375876054974	5.09406134681285	5.57036627808728	-0.0811243346236677	0.838176163456446	0.998431161219273
Merged-chr11-106216434-4	chr11	106216331	106216531	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026009)	promoter-TSS (NM_026009)	-64.0	NM_026009	67163.0	Mm.22109	NM_026009	ENSMUSG00000078622	Ccdc47	2610204L23Rik|C88307|asp4|calumin	coiled-coil domain containing 47	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-54658936-4	chr12	54658856	54659056	+	801.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-2384.0	NM_134054	104725.0	Mm.485026	NM_134054	ENSMUSG00000044408	Sptssa	1110002B05Rik|AA407909|AA409588|AU041967|Ssspta	serine palmitoyltransferase, small subunit A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-91759026-2	chr12	91758926	91759126	+	792.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 1 of 6)	RMER6A|LTR|ERVK	27410.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124316143-3	chr6	124316051	124316251	+	899.638916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170395, intron 6 of 16)	intron (NM_001170395, intron 6 of 16)	11500.0	NM_053094	93671.0	Mm.37426	NM_053094	ENSMUSG00000008845	Cd163	CD163v2|CD163v3	CD163 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-103914553-2	chr5	103914453	103914653	+	895.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3294.0	NM_001359986	246293.0	Mm.179871	NM_178741	ENSMUSG00000029312	Klhl8	2310001P09Rik|D5Ertd431e	kelch-like 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-92471724-2	chr5	92471624	92471824	+	771.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007644, intron 2 of 11)	intron (NM_007644, intron 2 of 11)	13167.0	NR_105843	102466159.0		NR_105843	ENSMUSG00000099160	Mir6415	Gm27714|mmu-mir-6415	microRNA 6415	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-41353485-4	chr4	41353376	41353576	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001355508, exon 1 of 7)	5' UTR (NM_001355508, exon 1 of 7)	1513.0	NM_001355508	67123.0	Mm.289795	NM_023305	ENSMUSG00000028437	Ubap1	2700092A01Rik|NAG20|UBAP-1|Ubap	ubiquitin-associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5093336-2	chr19	5093236	5093436	+	605.25	f1_balb.idr|f1_c57bl6.idr	TTS (NM_026553)	TTS (NM_026553)	4798.0	NM_026553	68090.0	Mm.44202	NM_026553	ENSMUSG00000024875	Yif1a	5330422J23Rik|54TM|Yif1|Yif1p	Yip1 interacting factor homolog A (S. cerevisiae)	protein-coding	-0.879434232553282	-0.863368186228245	-0.870001710421719	0.207470257140781	-0.878548218226478	-0.860017512281834	-0.869002348459762	-0.872902222154427	-3.52577640122347	0.237954581177968	1
Merged-chr7-130944504-2	chr7	130944404	130944604	+	570.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019564, intron 1 of 8)	MIRc|SINE|MIR	8301.0	NM_019564	56213.0	Mm.30156	NM_019564	ENSMUSG00000006205	Htra1	AI429470|HTRA|L56|Prss11|RSPP11	HtrA serine peptidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100536467-2	chr7	100536367	100536567	+	718.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183270)	promoter-TSS (NM_183270)	-633.0	NM_183270	68185.0	Mm.228995	NM_183270	ENSMUSG00000044881	Coa4	5330414O08Rik|AI115477|AW047259|Chchd8|E2ig2	cytochrome c oxidase assembly factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-120498679-3	chr5	120498590	120498790	+	933.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023625, intron 2 of 11)	ID_B1|SINE|B4	4933.0	NM_023625	71772.0	Mm.100065	NM_023625	ENSMUSG00000029598	Plbd2	1300012G16Rik|AU019810|P76	phospholipase B domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-16035731-3	chr16	16035679	16035879	+	916.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355731, intron 7 of 18)	Lx9|LINE|L1	111072.0	NM_001355731	224008.0	Mm.244703	NM_146068	ENSMUSG00000041974	Spidr	2310008H04Rik|Kiaa0146	scaffolding protein involved in DNA repair	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-79642224-2	chr11	79642124	79642324	+	618.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_175543, intron 3 of 14)	PB1D10|SINE|Alu	-19061.0	NR_003283	790912.0	Mm.447313	NR_003283	ENSMUSG00000087434	Rab11fip4os1	Gm11202	RAB11 family interacting protein 4 (class II), opposite strand 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81989896-4	chr15	81989809	81990009	+	837.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9369.0	NM_025503	66346.0	Mm.54292	NM_025503	ENSMUSG00000061633	1700029P11Rik	-	RIKEN cDNA 1700029P11 gene	protein-coding	4.1654145022665	4.47751402968676	4.15880811522852	4.82293809811958	4.14927583522667	4.32800961125549	3.90718109100421	4.8096084595161	-0.117946465288585	0.775650874442663	0.998431161219273
Merged-chr10-7663295-4	chr10	7663179	7663379	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_030698)	promoter-TSS (NR_030698)	-92.0	NR_030698	320642.0	Mm.398806	NR_030698		A630066F11Rik	-	RIKEN cDNA A630066F11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-121818990-2	chr3	121818890	121819090	+	945.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-3688.0	NM_008991	19299.0	Mm.399042	NM_008991	ENSMUSG00000028127	Abcd3	AI313901|AU018866|AW146054|PMP68|PMP70|Pxmp1	ATP-binding cassette, sub-family D (ALD), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-40515062-2	chr19	40514930	40515130	+	799.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1218.0	NM_009166	20411.0	Mm.210815	NM_009166	ENSMUSG00000025006	Sorbs1	2310065E01Rik|9530001P15Rik|CAP|SH3P12|Sh3d5|mKIAA1296	sorbin and SH3 domain containing 1	protein-coding	1.85996789850852	0.96545502397533	1.94798506991141	0.935123877704062	1.61453323036299	1.70459536101035	1.17286289571924	1.4615092671751	-0.0957608001932822	0.939834766867465	0.998431161219273
Merged-chr16-33416470-4	chr16	33416367	33416567	+	865.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358569, intron 1 of 8)	RLTR40|LTR|ERVK	16022.0	NM_001358569	22661.0	Mm.392667	NM_011749	ENSMUSG00000022811	Zfp148	2210405J08Rik|AI480666|AW045217|BERF-1|BFCOL1|ZBP-89|Znf148	zinc finger protein 148	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-91768460-1	chr12	91768360	91768560	+	541.0	f1_balb.idr	intron (NM_175367, intron 1 of 6)	intron (NM_175367, intron 1 of 6)	17976.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-98580288-2	chr15	98580188	98580388	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001201322, intron 1 of 3)	intron (NM_001201322, intron 1 of 3)	9284.0	NM_001201322	73863.0	Mm.66894	NM_001201322	ENSMUSG00000022993	4930415O20Rik	-	RIKEN cDNA 4930415O20 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-34030520-2	chr10	34030420	34030620	+	729.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7077.0	NM_001162937	692132.0	Mm.383415	NM_001162937	ENSMUSG00000071340	Trappc3l	Bet3l	trafficking protein particle complex 3 like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53187398-4	chr4	53187305	53187505	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27510.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-57128953-2	chr17	57128853	57129053	+	550.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	20824.0	NM_011617	21948.0	Mm.42228	NM_011617	ENSMUSG00000019489	Cd70	CD27LG|Cd27l|Tnfsf7|Tnlg8a	CD70 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-58199498-4	chr11	58199398	58199598	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018738)	promoter-TSS (NM_018738)	-58.0	NM_018738	16145.0	Mm.33902	NM_018738	ENSMUSG00000078853	Igtp	AW558444|Irgm3	interferon gamma induced GTPase	protein-coding	5.07008407546515	4.26063037426204	4.78205423104129	4.8217418829362	5.02383577368191	4.96524238109251	4.98051535461069	4.98930755214917	0.260378047306013	0.434010327979479	0.906135020028617
Merged-chr2-125625220-4	chr2	125625123	125625323	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081091)	promoter-TSS (NM_001081091)	-110.0	NM_001081091	99100.0	Mm.330545	NM_001081091	ENSMUSG00000068394	Cep152	AI851464|mKIAA0912	centrosomal protein 152	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-51919616-2	chr11	51919516	51919716	+	697.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-48015.0	NM_029976	52626.0	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133688581-3	chr4	133688526	133688726	+	870.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080819, intron 12 of 19)	intron (NM_001080819, intron 12 of 19)	-15460.0	NM_001356466	230801.0	Mm.217004	NM_178698	ENSMUSG00000043257	Pigv	B330013B03|D430024F16Rik	phosphatidylinositol glycan anchor biosynthesis, class V	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-134669789-4	chr7	134669786	134669986	+	833.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033420)	promoter-TSS (NM_001033420)	-801.0	NM_001033420	330662.0	Mm.436572	NM_001033420	ENSMUSG00000058325	Dock1	9130006G06Rik|AI854900|D630004B07Rik|b2b3190Clo	dedicator of cytokinesis 1	protein-coding	-1.32440223303897	-1.29339468673833	-0.717877708899544	-1.31276353204239	-1.32392690786997	-1.29109028300231	-1.30162128075409	-1.31119997543009	-2.49510383040271	0.470258445164311	1
Merged-chr2-158360929-2	chr2	158360829	158361029	+	732.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_015463, intron 2 of 5)	intron (NR_015463, intron 2 of 5)	580.0	NR_015463	68108.0	Mm.119198	NR_015463		Snhg17	9430008C03Rik	small nucleolar RNA host gene 17	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-5206303-1	chr16	5206203	5206403	+	543.0	f0_balb.idr	Intergenic	RLTR12B2|LTR|ERVK	-2291.0	NR_027804	27426.0	Mm.215641	NM_013796	ENSMUSG00000023143	Nagpa	AI596180|UCE	N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-63559517-4	chr4	63559477	63559677	+	887.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144905)	promoter-TSS (NM_144905)	-650.0	NM_144905	230279.0	Mm.41523	NM_144905	ENSMUSG00000045917	Tmem268	6330416G13Rik|AW492431|bM230C2.2	transmembrane protein 268	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-98265218-4	chr12	98265105	98265305	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-3430.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-20873518-4	chr14	20873412	20873612	+	847.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36850.0	NM_008873	18792.0	Mm.4183	NM_008873	ENSMUSG00000021822	Plau	u-PA|uPA	plasminogen activator, urokinase	protein-coding	4.86661186077765	4.18517598481605	4.79298023672163	4.78139929948301	3.94529388910588	3.39025066918067	2.8330279933036	4.49213895407327	-1.13457820697696	0.015666348352764	0.149967847888438
Merged-chr6-108605887-2	chr6	108605787	108605987	+	566.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_104577, intron 3 of 6)	intron (NR_104577, intron 3 of 6)	17280.0	NR_040757	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	1.02015353190615	0.929541263395707	0.984225372465455	0.246208753874395	0.237104520372158	0.262634133505317	0.25440763512853	0.247327308339793	-4.38569737020958	0.0255823956724474	1
Merged-chr4-9657511-4	chr4	9657419	9657619	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290367, intron 1 of 22)	intron (NM_001290367, intron 1 of 22)	11643.0	NM_023066	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	5.29865291689836	5.72877835783316	5.86923131365574	5.99850423751131	3.68550613418439	5.14687266100267	4.81773645705793	4.96706984822875	-1.16355346579358	0.000740150888322353	0.0152234234710142
Merged-chr5-123057402-2	chr5	123057302	123057502	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR15|LTR|ERVK	-10386.0	NM_001347456	74890.0	Mm.141383	NM_029112	ENSMUSG00000029477	Morn3	4930438O03Rik	MORN repeat containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-24627839-4	chr6	24627747	24627947	+	780.654175	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028459, intron 5 of 10)	intron (NM_028459, intron 5 of 10)	30076.0	NM_053098	93677.0	Mm.332941	NM_053098	ENSMUSG00000029683	Lmod2	C-Lmod	leiomodin 2 (cardiac)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-47362616-1	chr14	47362516	47362716	+	551.0	f1_c57bl6.idr	Intergenic	Intergenic	-11244.0	NM_010705	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	2.0075990713712	1.13691788950289	1.57198081977888	1.63652940650551	0.855424370233439	0.906328359609839	1.81185118747648	1.08250804192639	-1.37047315228901	0.296944105210672	0.800135209084663
Merged-chr7-43926182-2	chr7	43926077	43926277	+	863.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7594.0	NM_174865	317652.0	Mm.389896	NM_174865	ENSMUSG00000055193	Klk15	-	kallikrein related-peptidase 15	protein-coding	2.13454256344849	2.90251287485533	2.58702560513916	1.7042755539505	2.69443508077859	2.25125866138482	2.92181044690951	3.439870950044	0.975783022201911	0.216760814849682	0.707538695710375
Merged-chr17-24165093-4	chr17	24164964	24165164	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361533, intron 1 of 2)	intron (NM_001361533, intron 1 of 2)	-1331.0	NM_172935	245847.0	Mm.87319	NM_172935	ENSMUSG00000036820	Amdhd2	5730457F11Rik	amidohydrolase domain containing 2	protein-coding	5.67898906362595	5.80330801700223	5.80918663623939	5.40229843282674	5.53742985919105	5.67491517677675	4.66380693987535	5.80759284868576	-0.218648322321386	0.456606391791121	0.919264728457769
Merged-chr11-116488951-2	chr11	116488851	116489051	+	701.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026364, intron 1 of 9)	B2_Mm2|SINE|B2	1395.0	NM_026364	67763.0	Mm.25125	NM_026364	ENSMUSG00000015869	Prpsap1	5730409F23Rik|PAP39	phosphoribosyl pyrophosphate synthetase-associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-88648123-2	chr8	88648023	88648223	+	744.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145857, intron 1 of 12)	intron (NM_145857, intron 1 of 12)	776.0	NM_145857	257632.0	Mm.222633	NM_145857	ENSMUSG00000055994	Nod2	ACUG|BLAU|CD|Card15|F830032C23Rik|IBD1|Nlrc2	nucleotide-binding oligomerization domain containing 2	protein-coding	1.37660115363136	2.11436785102778	2.31768196224617	1.03445563167541	1.77903159040889	2.13143868175327	1.66729575928374	1.03770012480341	-0.306898948833988	0.794537008155202	0.998431161219273
Merged-chr18-38601254-5	chr18	38601178	38601378	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011898)	promoter-TSS (NM_011898)	-10.0	NM_011898	24066.0	Mm.42038	NM_011898	ENSMUSG00000024427	Spry4	A030006O18Rik|sprouty4	sprouty RTK signaling antagonist 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-44422062-2	chr11	44421962	44422162	+	592.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RodERV21-int|LTR|ERV1	21999.0	NM_001303244	16160.0	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-78050078-4	chr2	78049987	78050187	+	940.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1090.0	NR_108098	78158.0	Mm.78473	NR_108098	ENSMUSG00000085431	4930440I19Rik	-	RIKEN cDNA 4930440I19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-113794410-4	chr13	113794294	113794494	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172595)	promoter-TSS (NM_172595)	-114.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116829841-2	chr11	116829698	116829898	+	606.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13A1|LTR|ERVK	-1671.0	NM_001347633	67622.0	Mm.64962	NM_026280	ENSMUSG00000020814	Mxra7	1810057P16Rik|E130302J09Rik	matrix-remodelling associated 7	protein-coding	0.630438266683069	0.486419939053808	1.47739419487872	1.22480122585259	0.450807231665665	1.4674044016769	0.476928186867204	0.466314395225796	-0.862590821075687	0.616098107709135	0.977352076822579
Merged-chr4-32567431-2	chr4	32567373	32567573	+	599.125	f1_balb.idr|f1_c57bl6.idr	intron (NR_026843, intron 1 of 4)	L1MB8|LINE|L1	4189.0	NR_026843	414068.0	Mm.389550	NR_026843	ENSMUSG00000086150	Bach2os	-	BTB and CNC homology 2, opposite strand	ncRNA	-1.50514773300692	-1.47304699349736	-1.17726703805604	-1.49072857509552	-1.50289432044763	-1.47094333155708	-1.48055695039366	-1.33655748140551	-0.800871154242185	0.818457102725253	1
Merged-chr7-109519073-4	chr7	109518959	109519159	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011975)	promoter-TSS (NM_011975)	-136.0	NM_011975	26451.0	Mm.305750	NM_011975	ENSMUSG00000046364	Rpl27a	L27'|L27A|L29	ribosomal protein L27A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-61642371-4	chr11	61642253	61642453	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10968.0	NM_027817	71520.0	Mm.202760	NM_027817	ENSMUSG00000004837	Grap	8430435N19Rik|BB233594	GRB2-related adaptor protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-101601014-4	chr3	101600903	101601103	+	994.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144900, intron 1 of 22)	intron (NM_144900, intron 1 of 22)	3704.0	NM_144900	11928.0	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124445358-4	chr5	124445268	124445468	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310723)	promoter-TSS (NM_001310723)	-131.0	NM_001310723	67956.0	Mm.137966	NM_030241	ENSMUSG00000049327	Kmt5a	2410195B05Rik|AA617402|AW536475|PR-SET7|PR/SET07|Setd8	lysine methyltransferase 5A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-37175300-4	chr19	37175200	37175400	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290827, intron 1 of 10)	intron (NM_001290827, intron 1 of 10)	763.0	NM_001290826	208922.0	Mm.391176	NM_198300	ENSMUSG00000039652	Cpeb3	4831444O18Rik|CPE-BP3|mKIAA0940	cytoplasmic polyadenylation element binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-120170954-3	chr2	120170851	120171051	+	805.366699	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177845, intron 17 of 19)	intron (NM_177845, intron 17 of 19)	-16376.0	NM_133838	98878.0	Mm.132226	NM_133838	ENSMUSG00000027293	Ehd4	2210022F10Rik|AI197390|AI846352|AV006278|Past2	EH-domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-20231375-4	chr11	20231262	20231462	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172260, intron 5 of 6)	intron (NM_172260, intron 5 of 6)	18062.0	NM_172260	216543.0	Mm.260314	NM_172260	ENSMUSG00000044066	Cep68	6030463E10Rik|AI481761|BC027174|Kiaa0582	centrosomal protein 68	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-58544505-2	chr2	58544405	58544605	+	891.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110204, intron 1 of 12)	intron (NM_001110204, intron 1 of 12)	16905.0	NM_001355049	11477.0	Mm.689	NM_007394	ENSMUSG00000026836	Acvr1	ALK2|ActR-I|ActRIA|Acvr|Acvrlk2|Alk-2|Alk8|D330013D15Rik|SKR1|Tsk7L	activin A receptor, type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34248928-3	chr17	34248828	34249028	+	984.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10023.0	NM_010389	15002.0	Mm.327358	NM_010389	ENSMUSG00000041538	H2-Ob	A-beta-2|A-beta2|H-2Ab|H-2I|H-2Ob|H2-Ab|H2-Ab2|H2-IAb2|Ob	histocompatibility 2, O region beta locus	protein-coding	2.58101981513374	1.42382315187025	1.90919891831614	1.54182202169563	1.47648369822256	1.16211390667787	2.70119415642061	1.99030880978997	0.0560891672381587	0.958720202945485	0.998431161219273
Merged-chr11-23357523-4	chr11	23357443	23357643	+	984.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001190401, intron 10 of 79)	intron (NM_001190401, intron 10 of 79)	50648.0	NM_001190401	17847.0	Mm.119155	NM_001190401	ENSMUSG00000056342	Usp34	A530081C03Rik|Murr2	ubiquitin specific peptidase 34	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-123562576-4	chr4	123562485	123562685	+	987.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199137, intron 1 of 92)	intron (NM_001199137, intron 1 of 92)	-53835.0	NR_105824	102465214.0		NR_105824	ENSMUSG00000099005	Mir6398	Gm27657|mmu-mir-6398	microRNA 6398	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-86884324-4	chr10	86884073	86884273	+	919.62854	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138673, intron 43 of 68)	intron (NM_138673, intron 43 of 68)	105168.0	NM_175331	103466.0	Mm.200446	NM_175331	ENSMUSG00000054027	Nt5dc3	AU040402|AW540062|C630002B14Rik|TU12B1-TY	5'-nucleotidase domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4011220-2	chr19	4011120	4011320	+	728.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_133666, exon 3 of 10)	exon (NM_133666, exon 3 of 10)	1535.0	NM_133666	17995.0	Mm.29842	NM_133666	ENSMUSG00000037916	Ndufv1	CI-51kD	NADH dehydrogenase (ubiquinone) flavoprotein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-57331677-3	chr17	57331513	57331713	+	902.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27073.0	NM_001355723	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-78476943-2	chr9	78476843	78477043	+	799.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4781.0	NM_010106	13627.0	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-31563184-2	chr17	31563084	31563284	+	714.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-1589.0	NR_027493	18771.0	Mm.259295	NM_016670	ENSMUSG00000006705	Pknox1	D17Wsu76e|PREP1	Pbx/knotted 1 homeobox	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-25721706-3	chr3	25721590	25721790	+	858.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357095, intron 4 of 6)	intron (NM_001357095, intron 4 of 6)	432296.0	NM_001163387	192167.0	Mm.316080	NM_138666	ENSMUSG00000063887	Nlgn1	6330415N05Rik|BB179718|NL1|Nlg1|mKIAA1070	neuroligin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-45902105-4	chr1	45902012	45902212	+	997.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	23482.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-88770666-4	chr18	88770573	88770773	+	926.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	123534.0	NM_018821	54607.0	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-7653722-1	chr2	7653622	7653822	+	692.0	f0_balb.idr	Intergenic	RMER19B2|LTR|ERVK	-257524.0	NM_001110231	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-84532418-2	chr10	84532318	84532518	+	819.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175451, intron 1 of 1)	intron (NM_175451, intron 1 of 1)	1470.0	NM_175451	216197.0	Mm.334999	NM_175451	ENSMUSG00000046841	Ckap4	5630400A09Rik|CLIMP-63|P63	cytoskeleton-associated protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36307298-2	chr18	36307198	36307398	+	655.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7197.0	NM_001267796	109169.0	Mm.426423	NM_001267796	ENSMUSG00000110185	Igip	6330403M23Rik	IgA inducing protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-37089347-2	chr9	37089247	37089447	+	616.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001029838, intron 1 of 12)	intron (NM_001029838, intron 1 of 12)	57975.0	NM_148950	208076.0	Mm.260335	NM_148950	ENSMUSG00000035934	Pknox2	D230005H23Rik|Prep2	Pbx/knotted 1 homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-33398269-4	chr14	33398183	33398383	+	977.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310452, intron 4 of 10)	intron (NM_001310452, intron 4 of 10)	12741.0	NM_001310452	26419.0	Mm.21495	NM_016700	ENSMUSG00000021936	Mapk8	AI849689|JNK|JNK1|Prkm8|SAPK1	mitogen-activated protein kinase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-29430292-2	chr17	29430192	29430392	+	799.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60753.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	-2.18375600819439	-2.15556918946382	-2.16409311609999	-2.17109492323169	-2.18177734563694	-2.01960173909294	-2.16216348594872	-2.16984160310277	0.759018020146679	0.829933115115583	1
Merged-chr10-75201149-2	chr10	75201049	75201249	+	580.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10924.0	NM_153406	74392.0	Mm.27716	NM_153406	ENSMUSG00000033444	Specc1l	4930470P14Rik|4932439K10Rik|9530057A13Rik|AI317249|Cytsa|mKIAA0376	sperm antigen with calponin homology and coiled-coil domains 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-80839167-4	chr12	80839052	80839252	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178682, intron 2 of 5)	ORR1D2|LTR|ERVL-MaLR	48620.0	NM_001242419	217684.0	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-87857811-2	chr10	87857711	87857911	+	905.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001314010)	promoter-TSS (NM_001314010)	-454.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-7977672-4	chr14	7977568	7977768	+	838.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007870, intron 4 of 7)	intron (NM_007870, intron 4 of 7)	16514.0	NM_007870	13421.0	Mm.272258	NM_007870	ENSMUSG00000025279	Dnase1l3	DNasegamma|Dhp2|Lsd	deoxyribonuclease 1-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-93481426-2	chr4	93481326	93481526	+	795.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR84a|LTR|ERVL	-145915.0	NM_026954	69136.0	Mm.171558	NM_026954	ENSMUSG00000054000	Tusc1	2200001D17Rik|TSG-9	tumor suppressor candidate 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-4073426-4	chr7	4073317	4073517	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_033568)	TTS (NR_033568)	-10213.0	NM_001302676	52855.0	Mm.290880	NM_178611	ENSMUSG00000055541	Lair1	5133400O11Rik|BB115266|D7Bwg0421e|Lair-1	leukocyte-associated Ig-like receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132494759-4	chr4	132494673	132494873	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144907, intron 8 of 9)	intron (NM_144907, intron 8 of 9)	15683.0	NM_144907	230784.0	Mm.23608	NM_144907	ENSMUSG00000028893	Sesn2	HI95|SEST2|Ses2	sestrin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-112367937-4	chr2	112367808	112368008	+	986.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_026519, exon 1 of 5)	5' UTR (NM_026519, exon 1 of 5)	119.0	NM_026519	68032.0	Mm.220942	NM_026519	ENSMUSG00000027131	Emc4	2610318K02Rik|Tmem85	ER membrane protein complex subunit 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45351127-2	chr7	45351027	45351227	+	678.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029741, intron 15 of 29)	B4A|SINE|B4	-15034.0	NR_015480	50994.0	Mm.389897	NM_016664	ENSMUSG00000091510	Mtag2	MAG	metastasis associated gene 2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122501508-5	chr5	122501434	122501634	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110140, intron 1 of 19)	CpG	691.0	NM_001110140	11938.0	Mm.227583	NM_009722	ENSMUSG00000029467	Atp2a2	9530097L16Rik|D5Wsu150e|SERCA2|SERCA2B|Serca2a|mKIAA4195	ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-51805398-4	chr11	51805295	51805495	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR42|LTR|ERVK	41732.0	NM_025535	66397.0	Mm.196592	NM_025535	ENSMUSG00000020386	Sar1b	2310075M17Rik|2900019I22Rik|CMRD|Sara1b|Sara2|Sarb	secretion associated Ras related GTPase 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-114898793-2	chr4	114898693	114898893	+	617.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10105.0	NM_008593	17301.0	Mm.7997	NM_008593	ENSMUSG00000055210	Foxd2	AI426778|Mf2	forkhead box D2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-170706257-4	chr1	170706154	170706354	+	895.69165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001081304, exon 16 of 16)	3' UTR (NM_001081304, exon 16 of 16)	61722.0	NM_177068	320078.0	Mm.287131	NM_177068	ENSMUSG00000038463	Olfml2b	1110018N05Rik|4832415H08Rik|AI467542	olfactomedin-like 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-25469285-2	chr14	25469185	25469385	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	10100.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-49298644-4	chr13	49298538	49298738	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015759, intron 1 of 17)	intron (NM_015759, intron 1 of 17)	10570.0	NM_015759	30938.0	Mm.291089	NM_015759	ENSMUSG00000037946	Fgd3	5830461L01Rik|ZFYVE5	FYVE, RhoGEF and PH domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70213202-4	chr8	70213075	70213275	+	990.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001007570)	promoter-TSS (NM_001007570)	-894.0	NM_001007570	73095.0	Mm.185413	NM_001007570	ENSMUSG00000002346	Slc25a42	2900084M01Rik	solute carrier family 25, member 42	protein-coding	5.72393834559001	5.69482008000739	5.45180225518246	5.50672755237567	5.12151820397838	5.12661570678487	5.36829591076105	4.69985684162994	-0.580478601297257	0.0417219677921413	0.292503799799122
Merged-chr13-55837493-2	chr13	55837393	55837593	+	563.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6068.0	NM_011097	18740.0	Mm.135195	NM_011097	ENSMUSG00000021506	Pitx1	Bft|P-OTX|Potx|Ptx1	paired-like homeodomain transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-143521372-1	chr5	143521272	143521472	+	696.0	f1_balb.idr	intron (NM_001347530, intron 1 of 6)	intron (NM_001347530, intron 1 of 6)	6621.0	NM_009007	19353.0	Mm.292510	NM_009007	ENSMUSG00000001847	Rac1	AL023026|D5Ertd559e	Rac family small GTPase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70139225-4	chr8	70139119	70139319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001309645)	promoter-TSS (NM_001309645)	-22.0	NM_001025589	19727.0	Mm.161167	NM_011266	ENSMUSG00000036120	Rfxank	Tvl1	regulatory factor X-associated ankyrin-containing protein	protein-coding	7.94432050131219	7.72109006517544	7.93363312644861	8.49558384422241	8.27894913040981	7.88355245684165	8.03614807376835	8.50063428458919	0.14528891258018	0.396166903961595	0.883276804275027
Merged-chr5-146741301-2	chr5	146741218	146741418	+	701.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011669, intron 6 of 8)	MMAR1|DNA|TcMar-Mariner	53638.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	0.267098294305705	0.824542520165793	0.284023478751608	0.959821818174064	0.268683093313387	1.0803281814268	0.483677802677432	0.278805923990244	-0.235628392853084	0.901314850430875	1
Merged-chr4-126043134-2	chr4	126043034	126043234	+	648.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252651, intron 14 of 14)	intron (NM_001252651, intron 14 of 14)	-3794.0	NM_025544	66407.0	Mm.195628	NM_025544	ENSMUSG00000028861	Mrps15	1500003E24Rik|2410002B11Rik|Mprs15	mitochondrial ribosomal protein S15	protein-coding	-1.50525340993932	-1.47388616340953	-1.48337187766321	-1.34191013583787	-1.3545969562444	-1.47183056956015	-1.48122451987711	-1.34051539875028	0.708891105143862	0.826881111389938	1
Merged-chr8-70771767-2	chr8	70771667	70771867	+	558.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008841, intron 6 of 15)	intron (NM_008841, intron 6 of 15)	4945.0	NM_008841	18709.0	Mm.12945	NM_008841	ENSMUSG00000031834	Pik3r2	p85beta	phosphoinositide-3-kinase regulatory subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-66930874-4	chr10	66930778	66930978	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10494.0	NR_138561	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3986532-4	chr19	3986437	3986637	+	959.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302482)	promoter-TSS (NM_001302482)	-33.0	NM_001302479	71670.0	Mm.29735	NM_027857	ENSMUSG00000024866	Acy3	0610006H10Rik|AA3|AAIII|AW107362|Acy-3|HCBP1	aspartoacylase (aminoacylase) 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-145069885-2	chr5	145069785	145069985	+	698.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13984.0	NM_019767	56443.0	Mm.371610	NM_019767	ENSMUSG00000029621	Arpc1a	0610010H08Rik|1110030K07Rik|41kDa|AA407347|Sid32|Sid329	actin related protein 2/3 complex, subunit 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-27317362-3	chr14	27317265	27317465	+	861.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027871, intron 2 of 10)	intron (NM_027871, intron 2 of 10)	-18672.0	NM_001289687	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-64720735-3	chr17	64720607	64720807	+	968.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008549, intron 16 of 21)	intron (NM_008549, intron 16 of 21)	-46404.0	NR_105051	101202683.0	Mm.393309	NR_105051		Dreh	-	down-regulated in hepatocellular carcinoma	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-41466386-4	chr13	41466291	41466491	+	927.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111324, intron 1 of 7)	intron (NM_001111324, intron 1 of 7)	20969.0	NM_001111324	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-108856192-2	chr9	108856092	108856292	+	552.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134420, intron 3 of 17)	intron (NM_134420, intron 3 of 17)	2149.0	NM_134420	171429.0	Mm.45201	NM_134420	ENSMUSG00000023259	Slc26a6	B930010B04Rik|CFEX|Pat-1|Pat1	solute carrier family 26, member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-3668112-2	chr2	3668012	3668212	+	785.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45346.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127503356-2	chr10	127503256	127503456	+	875.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359751, intron 3 of 11)	intron (NM_001359751, intron 3 of 11)	1639.0	NM_177707	237611.0	Mm.32087	NM_177707	ENSMUSG00000040287	Stac3	9830125E18	SH3 and cysteine rich domain 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-20947573-2	chr17	20947473	20947673	+	625.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016891, intron 1 of 14)	intron (NM_016891, intron 1 of 14)	2119.0	NM_016891	51792.0	Mm.294138	NM_016891	ENSMUSG00000007564	Ppp2r1a	6330556D22Rik|PP2A|PR65	protein phosphatase 2, regulatory subunit A, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-16781711-3	chr19	16781603	16781803	+	737.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173028)	promoter-TSS (NM_173028)	-770.0	NM_173028	271564.0	Mm.211963	NM_173028	ENSMUSG00000046230	Vps13a	4930425F11|4930516E05Rik|4930543C13Rik|9930023P20|Chac|Chorein|D330038K10Rik|mKIAA0986	vacuolar protein sorting 13A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-129742901-2	chr1	129742801	129743001	+	597.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172485, intron 7 of 27)	L1_Mus2|LINE|L1	469597.0	NM_172485	210417.0	Mm.380518	NM_172485	ENSMUSG00000042581	Thsd7b	1700074E13Rik|B930082A18|D130067I03Rik	thrombospondin, type I, domain containing 7B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99674991-3	chr7	99674889	99675089	+	829.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175316, intron 7 of 13)	intron (NM_175316, intron 7 of 13)	20820.0	NM_001252531	101488.0	Mm.11249	NM_175316	ENSMUSG00000030737	Slco2b1	AI060904|AI852653|OATP-B|Slc21a9	solute carrier organic anion transporter family, member 2b1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-73370529-2	chr12	73370429	73370629	+	671.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_046013, intron 3 of 3)	intron (NR_046013, intron 3 of 3)	39034.0	NR_046013	380765.0	Mm.490476	NR_046013	ENSMUSG00000056359	D830013O20Rik	Gm891	RIKEN cDNA D830013O20 gene	ncRNA	1.17169141774286	0.607542506679742	1.30503990109253	1.25625099878954	0.564425918359588	0.610806198660898	1.97254913368205	0.583285580343794	0.0733002686514833	0.963701923806571	0.998431161219273
Merged-chr13-9560865-2	chr13	9560765	9560965	+	843.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081426, intron 9 of 36)	intron (NM_001081426, intron 9 of 36)	202945.0	NM_001347471	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118245742-2	chr11	118245642	118245842	+	703.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	2850.0	NM_001112699	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-142400611-2	chr7	142400511	142400711	+	666.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME1|LINE|L1	-12741.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-29488240-4	chr19	29488170	29488370	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33717.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-55365079-2	chr15	55364979	55365179	+	840.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_181277, intron 7 of 47)	ID4|SINE|ID	57329.0	NM_181277	12818.0	Mm.297859	NM_181277	ENSMUSG00000022371	Col14a1	5730412L22Rik|AW108078	collagen, type XIV, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25762572-2	chr7	25762472	25762672	+	682.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_009465, intron 17 of 19)	B1_Mur2|SINE|Alu	-7813.0	NM_178089	232989.0	Mm.254223	NM_144922	ENSMUSG00000040725	Hnrnpul1	E130317O14Rik|E1B-AP5|E1BAP5|Hnrnpul|Hnrpul1	heterogeneous nuclear ribonucleoprotein U-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5924885-4	chr19	5924763	5924963	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026772)	promoter-TSS (NM_026772)	-47.0	NM_026772	104252.0	Mm.491103	NM_026772	ENSMUSG00000045664	Cdc42ep2	1110008C05Rik|Borg1|Cep2|D19Bwg1013e	CDC42 effector protein (Rho GTPase binding) 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-93453371-4	chr10	93453252	93453452	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001313897)	promoter-TSS (NM_001313897)	-44.0	NM_001313897	16993.0	Mm.271071	NM_008517	ENSMUSG00000015889	Lta4h	-	leukotriene A4 hydrolase	protein-coding	4.10842199741077	2.62821551172572	3.43789501432477	4.12746972964337	3.75380396295022	4.39962175285646	3.36811112939919	3.35640700523569	0.103273872597139	0.855191630014186	0.998431161219273
Merged-chr15-101165797-4	chr15	101165693	101165893	+	993.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8279.0	NM_007395	11479.0	Mm.308467	NM_007395	ENSMUSG00000000532	Acvr1b	6820432J04|ALK-4|ActR-IB|ActRIB|Acvrlk4|Alk4|SKR2	activin A receptor, type 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-94222382-3	chr6	94222308	94222508	+	953.2000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_130996, intron 1 of 1)	intron (NR_130996, intron 1 of 1)	15034.0	NR_130996	78178.0	Mm.452749	NR_130996	ENSMUSG00000045095	4930511A08Rik	-	RIKEN cDNA 4930511A08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-21034254-2	chr19	21034154	21034354	+	765.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70456.0	NR_126458	75354.0	Mm.243873	NR_126458		4930554I06Rik	-	RIKEN cDNA 4930554I06 gene	ncRNA	1.24520810302564	1.2373276089455	0.571139231515501	0.894293157150906	0.552592277101463	1.2494405324995	0.573313750453387	0.89956056406014	-0.7812681603142	0.625934230732331	0.980912176761026
Merged-chr11-97072736-2	chr11	97072636	97072836	+	679.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8968.0	NR_106181	102465893.0		NR_106181	ENSMUSG00000098769	Mir8103	Gm27841|mmu-mir-8103	microRNA 8103	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-23314934-4	chr16	23314848	23315048	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252506, intron 1 of 6)	intron (NM_001252506, intron 1 of 6)	24478.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-134111187-2	chr1	134111087	134111287	+	861.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001284524)	promoter-TSS (NM_001284524)	-55.0	NM_001284525	71884.0	Mm.328268	NM_027979	ENSMUSG00000026450	Chit1	2300002L19Rik	chitinase 1 (chitotriosidase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-79835982-2	chr17	79835882	79836082	+	851.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60141.0	NM_178050	56298.0	Mm.175403	NM_019717	ENSMUSG00000059811	Atl2	2010110I21Rik|AA407293|AV334690|Aip-2|Arl6ip2	atlastin GTPase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-34797932-2	chr2	34797756	34797956	+	608.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_145522, intron 1 of 7)	ID4|SINE|ID	2056.0	NM_145522	227746.0	Mm.158705	NM_145522	ENSMUSG00000070953	Rabepk	8430412M01Rik|9530020D24Rik|AV073337|C87311|Rab9p40	Rab9 effector protein with kelch motifs	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-96917068-4	chr5	96916966	96917166	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4206.0	NR_131152	666266.0	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	3.37781512310679	4.28264670478149	4.57602605425271	3.78986028357924	3.40717023358056	2.88263752453597	4.48012100467642	3.99939524305948	-0.344882211985639	0.521040585852618	0.947836760490745
Merged-chr8-126589288-2	chr8	126589188	126589388	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001164598, exon 2 of 2)	3' UTR (NM_001164598, exon 2 of 2)	4148.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-156008012-4	chr2	156007870	156008070	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145352)	promoter-TSS (NM_001145352)	7.0	NM_001145352	320095.0	Mm.442175	NM_001145351	ENSMUSG00000074646	6430550D23Rik	-	RIKEN cDNA 6430550D23 gene	protein-coding	6.16592144563174	6.29667597376506	6.91153680347495	6.82502459960344	6.53359395033445	6.64775371660546	6.34817142266475	6.24525739855962	-0.143945066524428	0.519421586406782	0.947641799425091
Merged-chr1-78490313-4	chr1	78490211	78490411	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1414.0	NM_011811	23874.0	Mm.17898	NM_011811	ENSMUSG00000026245	Farsb	C76708|Farsa|Farsl|Farslb|Frsb	phenylalanyl-tRNA synthetase, beta subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-9099496-4	chr13	9099404	9099604	+	974.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172585, intron 1 of 17)	intron (NM_172585, intron 1 of 17)	5623.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-6707413-3	chr2	6707293	6707493	+	856.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110232, intron 4 of 15)	intron (NM_001110232, intron 4 of 15)	14269.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97139275-2	chr11	97139175	97139375	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_198100, exon 8 of 9)	exon (NM_198100, exon 8 of 9)	7144.0	NR_106094	102466822.0		NR_106094	ENSMUSG00000099286	Mir7235	Gm27986|mmu-mir-7235	microRNA 7235	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101472333-2	chr11	101472233	101472433	+	947.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_009708)	TTS (NM_009708)	4158.0	NM_009708	11858.0	Mm.378883	NM_009708	ENSMUSG00000001313	Rnd2	Arhn|Rohn|rho7	Rho family GTPase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36130469-4	chr1	36130376	36130576	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13837.0	NR_105862	102465540.0		NR_105862	ENSMUSG00000098752	Mir6897	Gm27652|mmu-mir-6897	microRNA 6897	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165061791-4	chr2	165061687	165061887	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027852, intron 1 of 7)	MER113|DNA|hAT-Charlie	6151.0	NM_011611	21939.0	Mm.271833	NM_011611	ENSMUSG00000017652	Cd40	AI326936|Bp50|GP39|HIGM1|IGM|IMD3|T-BAM|TRAP|Tnfrsf5|p50	CD40 antigen	protein-coding	4.96724888013946	3.3796760544499	3.76308518570754	4.57671751722761	4.71843125148285	4.30185933192008	3.15143155065627	5.07614664617548	0.201957611482344	0.69705296358042	0.997929106458421
Merged-chr4-133927375-1	chr4	133927275	133927475	+	586.0	f1_balb.idr	Intergenic	Intergenic	-39578.0	NM_009097	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	-2.18375600819439	-2.15556918946382	-2.16409311609999	-2.17109492323169	-2.18177734563694	-2.01960173909294	-2.16216348594872	-2.16984160310277	0.759018020146679	0.829933115115583	1
Merged-chr1-106221062-1	chr1	106220962	106221162	+	610.0	f0_balb.idr	intron (NM_133821, intron 1 of 16)	intron (NM_133821, intron 1 of 16)	49193.0	NM_133821	98432.0	Mm.24115	NM_133821	ENSMUSG00000044340	Phlpp1	AI836256|Phlpp|Plekhe1|SCOP|mKIAA0606	PH domain and leucine rich repeat protein phosphatase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-78697978-4	chr11	78697862	78698062	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008702)	promoter-TSS (NM_008702)	-537.0	NM_008702	18099.0	Mm.9001	NM_008702	ENSMUSG00000017376	Nlk	AI194375	nemo like kinase	protein-coding	5.79747878184784	5.44942461511171	5.6701503403817	5.72657605134249	6.17650564356905	6.03948829966127	5.7577643138768	5.8579215505665	0.331852732300793	0.171751722473075	0.639432302306149
Merged-chr8-75077959-2	chr8	75077859	75078059	+	758.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15659.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34186935-4	chr17	34186828	34187028	+	873.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013683)	promoter-TSS (NM_013683)	402.0	NM_013585	16912.0	Mm.390983	NM_013585	ENSMUSG00000096727	Psmb9	Lmp-2|Lmp2	proteasome (prosome, macropain) subunit, beta type 9 (large multifunctional peptidase 2)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-82805399-2	chr15	82805299	82805499	+	618.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11154.0	NM_029562	76279.0	Mm.439931	NM_029562	ENSMUSG00000022445	Cyp2d26	1300006E06Rik	cytochrome P450, family 2, subfamily d, polypeptide 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-123805466-2	chr9	123805366	123805566	+	605.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110253, intron 14 of 17)	B3|SINE|B2	-1011.0	NM_030712	80901.0	Mm.124289	NM_030712	ENSMUSG00000048521	Cxcr6	BB217514|BONZO|STRL33	chemokine (C-X-C motif) receptor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-37933694-4	chr18	37933627	37933827	+	801.612488	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305981, intron 1 of 28)	intron (NM_001305981, intron 1 of 28)	1749.0	NM_001305981	13367.0	Mm.195916	NM_007858	ENSMUSG00000024456	Diaph1	D18Wsu154e|Dia1|Diap1|Drf1|p140mDia	diaphanous related formin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-46174797-1	chr3	46174697	46174897	+	657.0	f1_c57bl6.idr	Intergenic	Intergenic	273144.0	NM_001101479	241989.0	Mm.119234	NM_001101479	ENSMUSG00000090919	Pabpc4l	C330050A14Rik|EG241989	poly(A) binding protein, cytoplasmic 4-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-53994822-2	chr5	53994722	53994922	+	565.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3701.0	NM_001081103	116873.0	Mm.265985	NM_054083	ENSMUSG00000039156	Stim2	-	stromal interaction molecule 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-93953744-4	chr15	93953644	93953844	+	916.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26633.0	NR_045737	77248.0	Mm.410768	NR_045737	ENSMUSG00000116360	9430014N10Rik	-	RIKEN cDNA 9430014N10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95993645-2	chr3	95993545	95993745	+	896.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023320, intron 2 of 5)	intron (NM_023320, intron 2 of 5)	2194.0	NM_023320	67220.0	Mm.458147	NM_023320	ENSMUSG00000015745	Plekho1	2810052M02Rik|CKIP-1|Ckip1|JZA-20|Jza2	pleckstrin homology domain containing, family O member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-75377634-1	chr18	75377534	75377734	+	575.0	f0_balb.idr	intron (NM_001042660, intron 3 of 3)	intron (NM_001042660, intron 3 of 3)	10269.0	NM_001042660	17131.0	Mm.34407	NM_008543	ENSMUSG00000025880	Smad7	Madh7	SMAD family member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-31754893-2	chr16	31754793	31754993	+	948.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001252436, exon 1 of 23)	exon (NM_001252436, exon 1 of 23)	543.0	NM_001252436	13383.0	Mm.382	NM_007862	ENSMUSG00000022770	Dlg1	B130052P05Rik|Dlgh1|E-dlg/SAP97|SAP-97|SAP97|mKIAA4187	discs large MAGUK scaffold protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-33176645-2	chr2	33176545	33176745	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290570, intron 7 of 16)	MIR3|SINE|MIR	-39316.0	NM_011923	26360.0	Mm.208919	NM_011923	ENSMUSG00000004105	Angptl2	AI593246|AW260363|Arp2	angiopoietin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-5206255-3	chr5	5206168	5206368	+	697.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011074, intron 4 of 14)	intron (NM_011074, intron 4 of 14)	59800.0	NM_001310448	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-122888722-2	chr10	122888622	122888822	+	860.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110218, intron 6 of 9)	RLTR17B_Mm|LTR|ERVK	97002.0	NR_029527	387251.0		NR_029527	ENSMUSG00000065406	Mirlet7i	Mirnlet7i|let-7i|mmu-let-7i	microRNA let7i	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-136953160-4	chr5	136953074	136953274	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163243)	promoter-TSS (NM_001163243)	-101.0	NM_001163243	66437.0	Mm.25849	NM_025562	ENSMUSG00000019054	Fis1	2010003O14Rik|Ttc11	fission, mitochondrial 1	protein-coding	5.61672932344032	5.36575662911999	4.83919607848619	6.06447203908604	5.75078996561727	5.93083375015957	5.64133751678905	6.25065415435527	0.409778183132356	0.164444504494351	0.627932209944809
Merged-chr1-106553043-4	chr1	106552947	106553147	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009741, intron 1 of 1)	intron (NM_009741, intron 1 of 1)	-6416.0	NR_106164	102466254.0		NR_106164	ENSMUSG00000098344	Mir3473f	Gm27846|mmu-mir-3473f	microRNA 3473f	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-15098580-1	chr2	15098480	15098680	+	547.0	f0_balb.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	43218.0	NM_029466	75869.0	Mm.174068	NM_029466	ENSMUSG00000017418	Arl5b	4930587A11Rik|AW146430|Arl8	ADP-ribosylation factor-like 5B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-44746295-4	chr16	44746190	44746390	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356392)	promoter-TSS (NM_001356392)	73.0	NM_001356392	66067.0	Mm.34520	NM_025332	ENSMUSG00000022668	Gtpbp8	0610037H22Rik	GTP-binding protein 8 (putative)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-80463174-4	chr12	80463129	80463329	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_133798, exon 1 of 9)	5' UTR (NM_133798, exon 1 of 9)	134.0	NM_133798	97827.0	Mm.206631	NM_133798	ENSMUSG00000032705	Exd2	4930539P14Rik|C85658|Exdl2	exonuclease 3'-5' domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-40136188-4	chr10	40136082	40136282	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 1 of 5)	intron (NM_001114332, intron 1 of 5)	6072.0	NM_028247	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-87388466-4	chr12	87388371	87388571	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011479)	promoter-TSS (NM_011479)	-116.0	NM_011479	20773.0	Mm.565	NM_011479	ENSMUSG00000021036	Sptlc2	LCB2|LCB2a|Spt2	serine palmitoyltransferase, long chain base subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-84597139-4	chr11	84597064	84597264	+	968.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	71504.0	NR_038057	78365.0	Mm.260345	NR_038057	ENSMUSG00000087211	Lhx1os	1500016L03Rik|Lhx1as	LIM homeobox 1, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-62730099-2	chr4	62729999	62730199	+	728.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB3|LINE|L1	56125.0	NM_001310706	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-96634690-2	chr15	96634590	96634790	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166458, intron 1 of 15)	B1_Mus1|SINE|Alu	7272.0	NM_134086	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-101909718-4	chr5	101909640	101909840	+	945.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 27 of 66)	intron (NM_172882, intron 27 of 66)	144610.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-50355676-4	chr11	50355545	50355745	+	849.354126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	2234.0	NR_030529	100049547.0		NR_030529	ENSMUSG00000076450	Mir804	Mirn804|mmu-mir-804	microRNA 804	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-35888383-4	chr16	35888284	35888484	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17002.0	NM_001039530	547253.0	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-20888233-4	chr9	20888132	20888332	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145610)	promoter-TSS (NM_145610)	57.0	NM_145610	235036.0	Mm.2930	NM_145610	ENSMUSG00000004100	Ppan	A230087P06Rik|SSF1	peter pan homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84833419-1	chr8	84833319	84833519	+	775.0	f1_balb.idr	intron (NM_183358, intron 1 of 1)	intron (NM_183358, intron 1 of 1)	1137.0	NM_183358	102060.0	Mm.489649	NM_183358	ENSMUSG00000033751	Gadd45gip1	2310040G17Rik|AI425883|Crif1|MRP-L59|Plinp1	growth arrest and DNA-damage-inducible, gamma interacting protein 1	protein-coding	0.0892087983829178	0.109915787057837	0.10317140065078	0.854735723727774	0.0905122513467236	0.767982320436487	0.104662095744583	0.556186081052202	0.428967970472792	0.841764508253076	1
Merged-chr13-23574892-4	chr13	23574791	23574991	+	889.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178204)	promoter-TSS (NM_178204)	510.0	NM_178188	319165.0	Mm.390553	NM_178188	ENSMUSG00000071478	Hist1h2ad	-	histone cluster 1, H2ad	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-8985083-4	chr13	8984987	8985187	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027000, intron 10 of 16)	intron (NM_027000, intron 10 of 16)	10925.0	NM_027000	69237.0	Mm.41800	NM_027000	ENSMUSG00000021149	Gtpbp4	2610028C09Rik|Crfg|Gtpbp3|NGB|Nog1	GTP binding protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105296039-2	chr8	105295939	105296139	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177788)	promoter-TSS (NM_177788)	74.0	NM_001357379	277978.0	Mm.40228	NM_177788	ENSMUSG00000043251	Exoc3l	C730015A04Rik|Exoc3l1	exocyst complex component 3-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-140137653-4	chr7	140137539	140137739	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199301)	promoter-TSS (NM_199301)	75.0	NM_199301	212508.0	Mm.296088	NM_199301	ENSMUSG00000039018	Mtg1	Gm169|Gtpbp7	mitochondrial ribosome-associated GTPase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41386385-9	chr19	41386269	41386469	+	927.1333619999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1299.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-51848606-1	chr12	51848506	51848706	+	617.0	f1_balb.idr	Intergenic	RSINE1|SINE|B4	-19070.0	NM_144788	207304.0	Mm.249391	NM_144788	ENSMUSG00000035247	Hectd1	A630086P08Rik|AI844876|b2b327Clo|opm	HECT domain E3 ubiquitin protein ligase 1	protein-coding	-0.503680328016747	-0.490727307185336	-0.49496269038526	-0.325916578770542	-0.502869568158885	-0.489773679091833	-0.304777399194402	0.335997229975576	2.72195232031665	0.283830932169822	1
Merged-chr1-156454584-1	chr1	156454484	156454684	+	744.666687	f0_balb.idr	intron (NM_009230, intron 3 of 15)	intron (NM_009230, intron 3 of 15)	19744.0	NM_009230	20652.0	Mm.28099	NM_009230	ENSMUSG00000026600	Soat1	8430426K15Rik|ACAT-1|AW550831|Acact|ald|hid	sterol O-acyltransferase 1	protein-coding	1.11632834493563	2.08785539484315	0.804253875180324	1.32794940235537	1.38562435699074	1.71071717296777	1.03699828195698	0.793451870060173	-0.52910599970558	0.692864774136612	0.99740158133691
Merged-chr10-44595467-2	chr10	44595367	44595567	+	905.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB1|LINE|L1	-136719.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141549652-4	chr7	141549558	141549758	+	877.8250119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9801.0	NM_001142681	68038.0	Mm.245355	NM_026522	ENSMUSG00000025512	Chid1	3110023E09Rik|AI841869	chitinase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-16556415-1	chr1	16556315	16556515	+	566.0	f1_c57bl6.idr	intron (NM_001271016, intron 5 of 6)	L1_Mus2|LINE|L1	-37113.0	NM_001347045	29819.0	Mm.216257	NM_025303	ENSMUSG00000025920	Stau2	-	staufen double-stranded RNA binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106498145-4	chr11	106498059	106498259	+	891.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2832.0	NR_030703	100216537.0		NR_030703	ENSMUSG00000065126	Snord104	-	small nucleolar RNA, C/D box 104	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-13540155-1	chr9	13540055	13540255	+	799.5	f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-79834.0	NM_001013813	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	0.857909357202591	0.319747772087312	0.979271816425549	0.610603003194099	0.446494429126548	0.321261139897808	0.645087502851106	0.308746272511473	-1.90277793912823	0.294057032483099	1
Merged-chr2-4962805-2	chr2	4962705	4962905	+	695.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13317.0	NM_001311208	68527.0	Mm.27791	NM_026754	ENSMUSG00000026668	Ucma	1110017I16Rik|AW121955|Grp	upper zone of growth plate and cartilage matrix associated	protein-coding	-0.283015241440405	-0.270754347129046	-0.274786941294021	-0.277887743275903	0.0820870088528058	0.209828411088693	-0.273898839116271	0.1336165662498	3.63664353953009	0.129561124686124	1
Merged-chr7-35802938-4	chr7	35802828	35803028	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177739)	promoter-TSS (NM_177739)	61.0	NM_177739	668501.0	Mm.286296	NM_177739	ENSMUSG00000044452	Zfp507	1810022O10Rik|A230056M16Rik|AL024009|AU021817|BB105092|Gm480|Znf507|mKIAA1084	zinc finger protein 507	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-44029452-4	chr16	44029361	44029561	+	912.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359085, intron 4 of 16)	intron (NM_001359085, intron 4 of 16)	-1516.0	NM_001172107	207798.0	Mm.19316	NM_153528	ENSMUSG00000036292	Gramd1c	4921521N14Rik	GRAM domain containing 1C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-107013810-1	chr11	107013710	107013910	+	684.0	f1_balb.idr	Intergenic	B1_Mm|SINE|Alu	-14285.0	NM_010655	16647.0	Mm.12508	NM_010655	ENSMUSG00000018362	Kpna2	2410044B12Rik|IPOA1|PTAC58|Rch1	karyopherin (importin) alpha 2	protein-coding	-1.03893171936929	-1.01878014509757	-1.03085782218114	-1.035225960386	-1.0383803877219	-0.82612586385501	-0.432885863295756	-1.03483606749936	2.93024725923328	0.343480707088508	1
Merged-chr10-21994618-4	chr10	21994498	21994698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011361)	promoter-TSS (NM_011361)	-68.0	NM_011361	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-6779161-2	chr2	6779061	6779261	+	551.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110232, intron 3 of 15)	intron (NM_001110232, intron 3 of 15)	-57499.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-121034031-4	chr10	121033942	121034142	+	966.770874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011915)	promoter-TSS (NM_011915)	38.0	NM_011915	24117.0	Mm.32831	NM_011915	ENSMUSG00000020218	Wif1	AW107799|WIF-1	Wnt inhibitory factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-122845857-2	chr6	122845757	122845957	+	812.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_021899)	TTS (NM_021899)	10300.0	NM_009779	12267.0	Mm.2408	NM_009779	ENSMUSG00000040552	C3ar1	AZ3B|C3AR|HNFAG09	complement component 3a receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-29406135-4	chr2	29406039	29406239	+	799.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290490, intron 3 of 5)	RMER4A|LTR|ERVK	27625.0	NM_001290490	68975.0	Mm.330109	NM_026896	ENSMUSG00000026799	Med27	1500015J03Rik|2310042P07Rik|AA682045|Crsp8|D2Ertd434e	mediator complex subunit 27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43964704-4	chr4	43964613	43964813	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027450, intron 1 of 4)	intron (NM_027450, intron 1 of 4)	7011.0	NM_027450	384009.0	Mm.22213	NM_027450	ENSMUSG00000028480	Glipr2	5730414A08Rik|C77180|GAPR-1	GLI pathogenesis-related 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-108572004-2	chr9	108571904	108572104	+	735.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_031392)	TTS (NM_031392)	2112.0	NM_026378	67789.0	Mm.458081	NM_026378	ENSMUSG00000019039	Dalrd3	6330580J24Rik|C77829|mir-425	DALR anticodon binding domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-37779530-4	chr13	37779451	37779651	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46487.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-60283721-4	chr10	60283634	60283834	+	874.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146124)	promoter-TSS (NM_001146124)	-727.0	NM_001146124	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-117486661-4	chr7	117486571	117486771	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175645, intron 2 of 11)	intron (NM_175645, intron 2 of 11)	105692.0	NM_175645	233781.0	Mm.461427	NM_175645	ENSMUSG00000030657	Xylt1	8030490L12	xylosyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-113643660-4	chr8	113643568	113643768	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_173015, exon 5 of 5)	3' UTR (NM_173015, exon 5 of 5)	455.0	NM_001048145	668110.0	Mm.390078	NM_029139	ENSMUSG00000033409	Syce1l	4930481F22Rik|MMRP|PSESS|mmrp2	synaptonemal complex central element protein 1 like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-25612271-2	chr2	25612171	25612371	+	558.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029859, intron 6 of 13)	intron (NM_029859, intron 6 of 13)	-3825.0	NM_001024616	227624.0	Mm.29600	NM_001024616	ENSMUSG00000015087	Rabl6	B230208H17Rik|Rbel1|Rbel1a|Rbel1b|parf	RAB, member RAS oncogene family-like 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-32531636-3	chr4	32531541	32531741	+	939.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109661, intron 2 of 4)	intron (NM_001109661, intron 2 of 4)	40021.0	NR_026843	414068.0	Mm.389550	NR_026843	ENSMUSG00000086150	Bach2os	-	BTB and CNC homology 2, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-14056177-4	chr2	14056080	14056280	+	915.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013935)	promoter-TSS (NM_013935)	-145.0	NM_013935	30963.0	Mm.241205	NM_013935	ENSMUSG00000063275	Hacd1	Ptpla	3-hydroxyacyl-CoA dehydratase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-62294555-3	chr13	62294462	62294662	+	879.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MMVL30-int|LTR|ERV1	88612.0	NM_001162910	100041979.0	Mm.445930	NM_001162910	ENSMUSG00000094942	Gm3604	-	predicted gene 3604	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-39967388-2	chr15	39967288	39967488	+	580.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045719, exon 3 of 3)	non-coding (NR_045719, exon 3 of 3)	4739.0	NR_045719	105976.0	Mm.394885	NR_045719		AU022793	-	expressed sequence AU022793	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-19151021-2	chr5	19150921	19151121	+	607.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	75534.0	NR_102341	70832.0	Mm.398993	NR_102341	ENSMUSG00000097626	4921504A21Rik	-	RIKEN cDNA 4921504A21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-13193001-7	chr10	13192887	13193087	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181470, intron 1 of 10)	CpG	150.0	NM_181470	353258.0	Mm.117581	NM_181470	ENSMUSG00000019814	Ltv1	2610020N02Rik	LTV1 ribosome biogenesis factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-20000419-2	chr16	20000319	20000519	+	593.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	-17370.0	NM_183390	239743.0	Mm.86699	NM_183390	ENSMUSG00000043008	Klhl6	-	kelch-like 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-96616014-3	chr12	96615913	96616113	+	745.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-568791.0	NR_103800	69423.0	Mm.46121	NM_027076		1700019M22Rik	-	NFX-like protein	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-30888058-4	chr5	30887967	30888167	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_122117)	promoter-TSS (NR_122117)	-785.0	NM_174849	231093.0	Mm.440364	NM_174849	ENSMUSG00000029165	Agbl5	9430057O19Rik|CCP5	ATP/GTP binding protein-like 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-122219529-4	chr7	122219377	122219577	+	904.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027363)	promoter-TSS (NM_027363)	-19.0	NM_027363	70261.0	Mm.96997	NM_027363	ENSMUSG00000030865	Chp2	2010110P09Rik|Cbhp2	calcineurin-like EF hand protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-127271361-4	chr1	127271266	127271466	+	967.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145128, intron 2 of 17)	intron (NM_145128, intron 2 of 17)	66380.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-79910923-4	chr3	79910807	79911007	+	849.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133187, intron 2 of 3)	intron (NM_133187, intron 2 of 3)	24977.0	NM_133187	68659.0	Mm.427274	NM_133187	ENSMUSG00000027955	Fam198b	1110032E23Rik|2210419I08Rik|AV011458|Ened	family with sequence similarity 198, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-26451399-3	chr12	26451310	26451510	+	669.400024	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021384, intron 2 of 5)	intron (NM_021384, intron 2 of 5)	5042.0	NM_021384	58185.0	Mm.24045	NM_021384	ENSMUSG00000020641	Rsad2	2510004L01Rik|Vig1|cig5	radical S-adenosyl methionine domain containing 2	protein-coding	1.56769382094383	1.88747084585256	1.96437356798101	2.22465430728222	1.94417498225167	2.16995999586532	1.84242312162751	1.92171853907566	0.112961603552404	0.904603509197523	0.998431161219273
Merged-chr11-94704116-4	chr11	94704011	94704211	+	997.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001007584, exon 1 of 2)	exon (NM_001007584, exon 1 of 2)	388.0	NM_001007584	432589.0	Mm.342314	NM_001007584	ENSMUSG00000056008	Gm11541	-	predicted gene 11541	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96333741-2	chr3	96333641	96333841	+	584.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11546.0	NR_152105	100504145.0	Mm.100443	NR_152105	ENSMUSG00000097851	Platr30	Gm17580	pluripotency associated transcript 30	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135955507-1	chr5	135955407	135955607	+	589.0	f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	18969.0	NM_001160366	109267.0	Mm.332750	NM_001160366	ENSMUSG00000029699	Ssc4d	C330016E03Rik|S4D-SRCRB|SRCRB-S4D|Srcrb4d	scavenger receptor cysteine rich family, 4 domains	protein-coding	-1.58994551673671	-1.55912852307891	-1.56844783632235	-1.57610299769523	-1.18549093183599	-1.55710898902261	-1.56633814807757	-1.57473272746952	1.78703309985663	0.610309988231842	1
Merged-chr12-84752235-4	chr12	84752154	84752354	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20858.0	NM_023409	67963.0	Mm.282556	NM_023409	ENSMUSG00000021242	Npc2	2700012J19Rik|AA408070|AU045843|HE1	NPC intracellular cholesterol transporter 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-91460360-2	chr1	91460260	91460460	+	897.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1032.0	NM_011066	18627.0	Mm.482463	NM_011066	ENSMUSG00000055866	Per2	mKIAA0347|mPer2	period circadian clock 2	protein-coding	0.389715021427295	0.209705227876425	0.193545380274091	0.180624865102286	0.161625531914535	1.99740351235738	1.29708463670347	0.182912052325925	4.21684643730124	0.0223416084405539	0.193401600338936
Merged-chr2-69051823-2	chr2	69051723	69051923	+	850.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347161, intron 6 of 10)	intron (NM_001347161, intron 6 of 10)	-83977.0	NM_181547	329416.0	Mm.90047	NM_181547	ENSMUSG00000034738	Nostrin	Daip2|mDaIP2	nitric oxide synthase trafficker	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-163575499-4	chr2	163575346	163575546	+	953.2976070000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26868.0	NM_181734	76080.0	Mm.89828	NM_029512	ENSMUSG00000017679	Ttpal	3110080A02Rik|5830472M02Rik	tocopherol (alpha) transfer protein-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-86139426-2	chr15	86139326	86139526	+	649.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_145475, exon 13 of 13)	3' UTR (NM_145475, exon 13 of 13)	-46302.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-60728409-4	chr11	60728313	60728513	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_039559)	promoter-TSS (NR_039559)	15.0	NM_001009927	237781.0	Mm.339760	NM_001009927	ENSMUSG00000018599	Mief2	AI482195|Gm11|Smcr7	mitochondrial elongation factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-110968258-4	chr13	110968159	110968359	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64413.0	NR_131194	102636142.0	Mm.417611	NR_131194		4930526H09Rik	-	RIKEN cDNA 4930526H09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-24973018-1	chr12	24972918	24973118	+	600.0	f1_c57bl6.idr	Intergenic	Intergenic	-1914.0	NM_001081378	77480.0	Mm.250641	NM_001081378	ENSMUSG00000036333	Kidins220	3110039L19Rik|AI194387|AI316525|C330002I19Rik|mKIAA1250	kinase D-interacting substrate 220	protein-coding	-2.18375600819439	-2.15556918946382	-2.16409311609999	-2.17109492323169	-2.18177734563694	-2.01960173909294	-2.16216348594872	-2.16984160310277	0.759018020146679	0.829933115115583	1
Merged-chr2-132598295-4	chr2	132598203	132598403	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033469, exon 1 of 4)	non-coding (NR_033469, exon 1 of 4)	107.0	NR_033469	767814.0	Mm.371752	NR_033468	ENSMUSG00000074783	AU019990	-	expressed sequence AU019990	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-67888184-4	chr14	67888083	67888283	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177780, intron 1 of 51)	MIR3|SINE|MIR	-28438.0	NR_105857	102465310.0		NR_105857	ENSMUSG00000098866	Mir6539	Gm27464|mir-6539|mmu-mir-6539	microRNA 6539	ncRNA	4.06751756114178	3.98486677728705	4.47599188850801	4.67398577345263	3.58348826958466	3.34806682948063	3.34539087921796	4.08367486747971	-0.966114571466262	0.0382343729283537	0.278359227181061
Merged-chr19-41482728-4	chr19	41482637	41482837	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42515.0	NM_001326287	627352.0	Mm.395111	NM_001326287		Morf4l1b	EG627352|Gm6747	mortality factor 4 like 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-31188241-4	chr16	31188134	31188334	+	832.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030138, intron 1 of 22)	MER45A|DNA|hAT-Tip100	13004.0	NM_030138	78618.0	Mm.274646	NM_030138	ENSMUSG00000049076	Acap2	4832442G16|9530039J15Rik|CNT-B2|Centb2|mKIAA0041	ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-80704018-2	chr18	80703920	80704120	+	793.1999509999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_198429, intron 1 of 9)	intron (NM_198429, intron 1 of 9)	4153.0	NM_001164111	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	1.52729254337132	1.85939139277112	0.950838500467288	1.61611224208943	2.00159757427504	0.97447379456027	0.955153356106185	2.11538395597422	0.341728709098936	0.794200916923723	0.998431161219273
Merged-chr8-86623998-4	chr8	86623879	86624079	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025827)	promoter-TSS (NM_025827)	-64.0	NM_025827	66887.0	Mm.324550	NM_025827	ENSMUSG00000047866	Lonp2	1300002A08Rik|AU015403|Lonp	lon peptidase 2, peroxisomal	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-108201320-4	chr9	108201216	108201416	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10933.0	NM_007567	12217.0	Mm.20425	NM_007567	ENSMUSG00000032589	Bsn	-	bassoon	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-15684164-2	chr17	15684064	15684264	+	653.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-20803.0	NM_007690	12648.0	Mm.8137	NM_007690	ENSMUSG00000023852	Chd1	4930525N21Rik|AI851787|AW555109	chromodomain helicase DNA binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5276084-4	chr17	5275984	5276184	+	898.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 6 of 19)	intron (NM_001085355, intron 6 of 19)	142683.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-17387432-2	chr19	17387332	17387532	+	677.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6611.0	NM_019437	54391.0	Mm.7013	NM_019437	ENSMUSG00000024712	Rfk	0610038L10Rik|AF031381|KOI-4	riboflavin kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-54710309-1	chr14	54710209	54710409	+	586.0	f1_balb.idr	TTS (NM_207131)	TTS (NM_207131)	1865.0	NM_207131	110794.0	Mm.236223	NM_207131	ENSMUSG00000052435	Cebpe	C/EBPe|C/EBPepsilon|CRP1|Gm294	CCAAT/enhancer binding protein (C/EBP), epsilon	protein-coding	0.328161140702298	0.402517106180976	0.379518053153233	1.70717628173725	0.80814423234962	0.407542051892103	0.384693907725893	2.61278962347201	1.59050223772585	0.627950511330033	0.980912176761026
Merged-chr4-41314353-4	chr4	41314294	41314494	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026893, intron 1 of 8)	CpG	507.0	NM_026893	68970.0	Mm.28891	NM_026893	ENSMUSG00000028436	Dcaf12	1500001L20Rik|5830424K06Rik|AA420338|AI851081|Wdr40a	DDB1 and CUL4 associated factor 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-83198574-4	chr10	83198462	83198662	+	827.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	139255.0	NM_177388	338365.0	Mm.67073	NM_177388	ENSMUSG00000034591	Slc41a2	A230035L05Rik|SLC41A1-L1	solute carrier family 41, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129625299-5	chr4	129625257	129625457	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001199695)	TTS (NM_001199695)	-1449.0	NM_025455	66264.0	Mm.383215	NM_025455	ENSMUSG00000028795	Ccdc28b	1110002E08Rik|1810010N17Rik	coiled coil domain containing 28B	protein-coding	3.69360238166059	3.18809909925371	3.6129723311113	3.38776581827453	2.8575026509814	2.57759597971647	2.63757663620792	1.54521026122544	-1.73947594242938	0.0111723196801922	0.117670654828338
Merged-chr6-134947604-4	chr6	134947519	134947719	+	896.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_037956, intron 1 of 1)	intron (NR_037956, intron 1 of 1)	18527.0	NR_037955	381822.0	Mm.5935	NR_037955	ENSMUSG00000098318	Lockd	1190002F15Rik|AI120476|Droc	lncRNA downstream of Cdkn1b	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-87058589-2	chr15	87058489	87058689	+	609.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-485710.0	NM_001252310	106014.0	Mm.244319	NM_134096	ENSMUSG00000054863	Fam19a5	TAFA5|Tafa-5|Tara-5	family with sequence similarity 19, member A5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116075411-2	chr11	116075311	116075511	+	802.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001009573, intron 7 of 32)	(T)n|Simple_repeat|Simple_repeat	2550.0	NM_001009573	70450.0	Mm.259460	NM_001009573	ENSMUSG00000057948	Unc13d	2610108D09Rik|Jinx|Munc13-4|mFLJ00067	unc-13 homolog D (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-139267365-2	chr4	139267265	139267465	+	712.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037761, intron 4 of 9)	intron (NM_001037761, intron 4 of 9)	43343.0	NR_151463	212555.0	Mm.45131	NM_145384	ENSMUSG00000028744	Pqlc2	BC019216	PQ loop repeat containing 2	protein-coding	0.315787589036097	0.079181334556164	0.0740950440339722	0.358231896813182	0.60714348119479	0.0803300407720589	0.0752155162270747	0.583583260714657	1.17171189385346	0.572830282285118	1
Merged-chr2-27732999-3	chr2	27732899	27733099	+	891.2777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290482, intron 1 of 9)	intron (NM_001290482, intron 1 of 9)	22416.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-35388594-3	chr13	35388494	35388694	+	736.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-176546.0	NR_126478	75543.0	Mm.489052	NR_126478	ENSMUSG00000113770	1700019C18Rik	-	RIKEN cDNA 1700019C18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-111954947-1	chr11	111954847	111955047	+	663.0	f0_balb.idr	Intergenic	Intergenic	756409.0	NR_024085	217294.0	Mm.297761	NM_146031	ENSMUSG00000041674	BC006965	-	cDNA sequence BC006965	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-94697871-2	chr16	94697771	94697971	+	572.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	86452.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127557898-4	chr7	127557790	127557990	+	868.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304266, intron 33 of 33)	intron (NM_001304266, intron 33 of 33)	-3333.0	NM_001304267	105180375.0	Mm.428042	NM_001304267	ENSMUSG00000106715	Tmem265	-	transmembrane protein 265	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-81996163-4	chr3	81996044	81996244	+	923.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021370)	promoter-TSS (NM_021370)	-778.0	NM_021370	58170.0	Mm.88839	NM_021370	ENSMUSG00000028008	Asic5	Accn5|Blinac|Inac	acid-sensing (proton-gated) ion channel family member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-102831688-4	chr2	102831570	102831770	+	881.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039150, intron 9 of 13)	intron (NM_001039150, intron 9 of 13)	69995.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	0.033994655494547	0.697039597433062	0.0472266586341752	0.0422686854936948	0.0352290235470714	0.708605175907366	0.536729114553444	0.0431362096516369	0.800059393760815	0.715247062146912	1
Merged-chr11-19018212-4	chr11	19018130	19018330	+	919.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001193271, exon 1 of 13)	exon (NM_001193271, exon 1 of 13)	739.0	NM_001193271	17268.0	Mm.356578	NM_010789	ENSMUSG00000020160	Meis1	C530044H18Rik|Evi8	Meis homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-97161445-2	chr15	97161345	97161545	+	669.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_155279, intron 2 of 2)	intron (NR_155279, intron 2 of 2)	5799.0	NR_155278	102635594.0	Mm.392594	NR_155278	ENSMUSG00000116295	Gm32885	-	predicted gene, 32885	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-26470639-2	chr2	26470539	26470739	+	568.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_105962)	promoter-TSS (NR_105962)	-520.0	NR_105962	102465602.0		NR_105962	ENSMUSG00000098548	Mir6996	Gm27531|mmu-mir-6996	microRNA 6996	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-108651239-5	chr12	108651215	108651415	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163396, intron 3 of 14)	intron (NM_001163396, intron 3 of 14)	-7305.0	NR_029771	723909.0		NR_029771	ENSMUSG00000065436	Mir342	Mirn342|mmu-mir-342	microRNA 342	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-7495522-4	chr19	7495421	7495621	+	897.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146091, intron 1 of 12)	intron (NM_146091, intron 1 of 12)	1083.0	NM_146091	109168.0	Mm.264016	NM_146091	ENSMUSG00000024759	Atl3	4633402C03Rik|5730596K20Rik|AI465397|AW228836	atlastin GTPase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-38623639-2	chr10	38623539	38623739	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	198140.0	NM_001177783	215919.0	Mm.294313	NM_001177783	ENSMUSG00000094311	Rfpl4b	100040915|Gm3037|Gm62	ret finger protein-like 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-148535758-4	chr2	148535664	148535864	+	815.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-92229.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	0.454184473197438	1.22434881653069	0.480212699078547	1.33231522216989	0.456650971437237	0.735588021368188	1.58830908918795	0.472260730761549	-0.0853852116706847	0.960566974789346	0.998431161219273
Merged-chr6-121230073-4	chr6	121229971	121230171	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MD|LINE|L1	-15835.0	NM_011909	24110.0	Mm.326911	NM_011909	ENSMUSG00000030107	Usp18	1110058H21Rik|AW047653|UBP43|Ubp15	ubiquitin specific peptidase 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-64797423-4	chr1	64797316	64797516	+	935.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039493, intron 7 of 7)	intron (NM_001039493, intron 7 of 7)	-59666.0	NM_022721	14367.0	Mm.150813	NM_022721	ENSMUSG00000045005	Fzd5	5330434N09Rik|AI427138|Fz-5|Fz5|mFz5	frizzled class receptor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-20304956-4	chr3	20304856	20305056	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29223.0	NM_029706	76703.0	Mm.34692	NM_029706	ENSMUSG00000011463	Cpb1	0910001A18Rik|1810063F02Rik|2210008M23Rik|AI504870	carboxypeptidase B1 (tissue)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116842905-4	chr11	116842683	116842883	+	995.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028865)	promoter-TSS (NM_028865)	666.0	NM_033398	107817.0	Mm.481684	NM_033398	ENSMUSG00000056962	Jmjd6	5730436I23Rik|D11Ertd195e|PSR|PtdSerR|Ptdsr|mKIAA0585	jumonji domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-57746716-4	chr14	57746619	57746819	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015771)	promoter-TSS (NM_015771)	-596.0	NM_015771	50523.0	Mm.347899	NM_015771	ENSMUSG00000021959	Lats2	4932411G09Rik|AV277261|AW228608	large tumor suppressor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-37322996-3	chr1	37322874	37323074	+	675.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030266, intron 1 of 25)	MIRc|SINE|MIR	23136.0	NM_001290797	269180.0	Mm.5294	NM_030266	ENSMUSG00000026113	Inpp4a	107kDa|9630012D15|D130048C09Rik|R74740	inositol polyphosphate-4-phosphatase, type I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71286549-2	chr17	71286449	71286649	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357337, intron 2 of 7)	L1MC1|LINE|L1	24462.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	-1.21126401937928	-1.18612895332696	-1.19662667369145	-0.905677053183207	-1.21082540297107	-1.18385405353169	-0.874355872764029	-1.20370627581025	0.130889411444333	0.969106491518409	1
Merged-chr8-72570968-5	chr8	72570901	72571101	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172396)	promoter-TSS (NM_172396)	47.0	NM_172396	66818.0	Mm.22565	NM_172396	ENSMUSG00000044600	Smim7	9130011J15Rik	small integral membrane protein 7	protein-coding	3.944041986156	3.33399975417554	3.92884026771351	3.56297174946106	3.41198650946802	3.64972821301666	3.69037364394507	3.0350431276851	-0.386973574081899	0.457439566384926	0.919462395309797
Merged-chr11-60912592-4	chr11	60912505	60912705	+	709.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025294, intron 1 of 2)	intron (NM_025294, intron 1 of 2)	1187.0	NM_025294	24083.0	Mm.22780	NM_025294	ENSMUSG00000018931	Natd1	AI256713|F3-2|Gm16515|Gtlf3b	N-acetyltransferase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128089687-2	chr10	128089587	128089787	+	668.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016774, intron 9 of 9)	intron (NM_016774, intron 9 of 9)	-3096.0	NM_054078	116848.0	Mm.252213	NM_054078	ENSMUSG00000040054	Baz2a	AA415431|C030005G16Rik|C78388|Tip5|Walp3|mKIAA0314	bromodomain adjacent to zinc finger domain, 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-17347709-1	chr12	17347609	17347809	+	1000.0	f1_balb.idr	promoter-TSS (NM_001008421)	promoter-TSS (NM_001008421)	-784.0	NM_001008421	217431.0	Mm.27536	NM_001008421	ENSMUSG00000061458	Nol10	Gm67	nucleolar protein 10	protein-coding	0.256910160307275	-0.0698331810946242	-0.0739709038067502	0.309317858299219	0.163780970088416	-0.0688966125966884	-0.073060703362238	0.314760583414716	-0.20284497782312	0.926090377375751	1
Merged-chr5-52743033-1	chr5	52742933	52743133	+	711.0	f1_c57bl6.idr	intron (NM_025951, intron 1 of 9)	intron (NM_025951, intron 1 of 9)	1459.0	NM_025951	67073.0	Mm.248647	NM_025951	ENSMUSG00000029186	Pi4k2b	2610042N09Rik|4933409G22Rik	phosphatidylinositol 4-kinase type 2 beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19225865-1	chr7	19225765	19225965	+	580.0	f1_balb.idr	Intergenic	Intergenic	-2524.0	NM_207525	403187.0	Mm.239583	NM_207525	ENSMUSG00000052214	Opa3	D630048P19Rik|Gm1425|Gm472	optic atrophy 3	protein-coding	1.94993888693909	2.19211721521987	2.48085396747659	1.29028365668187	2.47927112363668	2.78632734621749	1.58616996929925	2.76627744226178	0.992675353921259	0.291894356922662	0.796184107538216
Merged-chr2-148575670-4	chr2	148575574	148575774	+	773.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-96941.0	NM_019761	56488.0	Mm.34663	NM_019761	ENSMUSG00000036992	Nxt1	1110001N02Rik	NTF2-related export protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-177470317-4	chr1	177470189	177470389	+	980.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24468.0	NM_013915	30928.0	Mm.330700	NM_013915	ENSMUSG00000063659	Zbtb18	RP58|Zfp238|Znf238.|zfp-238	zinc finger and BTB domain containing 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-135699450-4	chr7	135699362	135699562	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081117, exon 12 of 14)	exon (NM_001081117, exon 12 of 14)	16917.0	NM_001081117	17345.0	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-77887877-2	chr16	77887777	77887977	+	606.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	241604.0	NR_029540	723952.0		NR_029540	ENSMUSG00000065472	Mir125b-2	Mirn125b-2|mir-125b-2	microRNA 125b-2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105471490-4	chr8	105471418	105471618	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026481)	promoter-TSS (NM_026481)	-96.0	NM_026481	67971.0	Mm.29358	NM_026481	ENSMUSG00000014846	Tppp3	2700055K07Rik|CGI-38|Ceacam9|mmCGM8	tubulin polymerization-promoting protein family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-47447036-4	chr19	47446946	47447146	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008018, intron 1 of 14)	intron (NM_008018, intron 1 of 14)	17365.0	NM_001164717	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	1.64657051955631	0.61610816329726	0.834147005466365	0.588418805174613	1.41367786198297	0.619537267976548	1.92954503290604	0.590574285411358	0.907080633546046	0.573428390770007	0.964496317550327
Merged-chr10-20663171-4	chr10	20663095	20663295	+	941.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013875, intron 1 of 12)	intron (NM_013875, intron 1 of 12)	61883.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70241055-2	chr11	70240955	70241155	+	918.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001331118)	TTS (NM_001331118)	-1203.0	NM_173742	52898.0	Mm.29852	NM_173742	ENSMUSG00000093989	Rnasek	2310033H11Rik|AA571397|D11Bwg0434e	ribonuclease, RNase K	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-58795511-4	chr1	58795465	58795665	+	982.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_009812, exon 1 of 9)	5' UTR (NM_009812, exon 1 of 9)	191.0	NM_009812	12370.0	Mm.336851	NM_009812	ENSMUSG00000026029	Casp8	CASP-8|FLICE|MACH|Mch5	caspase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-100882306-4	chr10	100882200	100882400	+	926.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-140665.0	NR_152765	102639396.0	Mm.404529	NR_152765		Gm35722	-	predicted gene, 35722	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32590404-4	chr2	32590303	32590503	+	979.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011373, intron 2 of 4)	intron (NM_011373, intron 2 of 4)	3325.0	NM_011373	20448.0	Mm.27446	NM_011373	ENSMUSG00000079442	St6galnac4	SIAT7-D|ST6GalNAcIV|Siat7d	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135957721-4	chr5	135957603	135957803	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16773.0	NM_001160366	109267.0	Mm.332750	NM_001160366	ENSMUSG00000029699	Ssc4d	C330016E03Rik|S4D-SRCRB|SRCRB-S4D|Srcrb4d	scavenger receptor cysteine rich family, 4 domains	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-51187343-2	chr14	51187242	51187442	+	766.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8581.0	NM_007449	11731.0	Mm.377077	NM_007449	ENSMUSG00000047894	Ang2	Angrp|Raa3|Rnase5b	angiogenin, ribonuclease A family, member 2	protein-coding	2.10430702567613	2.58847778828184	2.4974410582745	2.80683553754286	1.88889919004624	1.27820238635472	2.05315651861114	1.21806073393841	-2.16931581594238	0.0279159231443562	0.225393839761767
Merged-chr11-106278431-2	chr11	106278331	106278531	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029467, intron 1 of 7)	ID_B1|SINE|B4	1759.0	NM_029467	75870.0	Mm.159608	NM_029467	ENSMUSG00000020712	Tcam1	4930570F09Rik|AI429105	testicular cell adhesion molecule 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-70261160-1	chr10	70261060	70261260	+	699.0	f0_balb.idr	intron (NM_025807, intron 2 of 5)	intron (NM_025807, intron 2 of 5)	15884.0	NM_025807	66859.0	Mm.19325	NM_025807	ENSMUSG00000037762	Slc16a9	1200003C15Rik|4930425B13Rik|AI552636	solute carrier family 16 (monocarboxylic acid transporters), member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-5464872-2	chr15	5464772	5464972	+	844.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31446.0	NR_045274	71432.0	Mm.291087	NR_045274	ENSMUSG00000110018	5430437J10Rik	-	RIKEN cDNA 5430437J10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-160214290-3	chr2	160214183	160214383	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	113211.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123129131-1	chr5	123129031	123129231	+	571.0	f0_balb.idr	intron (NM_175092, intron 2 of 4)	intron (NM_175092, intron 2 of 4)	3498.0	NM_175092	23912.0	Mm.253876	NM_175092	ENSMUSG00000029449	Rhof	AI845056|AV026554|Arhf|Ifld1|Rif	ras homolog family member F (in filopodia)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81198769-2	chr10	81198669	81198869	+	700.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_027120, exon 7 of 7)	3' UTR (NM_027120, exon 7 of 7)	3268.0	NM_027120	69564.0	Mm.437211	NM_027120	ENSMUSG00000004939	Nmrk2	2310015C21Rik|Itgb1bp3|Mibp	nicotinamide riboside kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67265081-3	chr10	67264981	67265181	+	840.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20200.0	NM_001036293	641340.0	Mm.136223	NM_001036293	ENSMUSG00000075000	Nrbf2	NRBF-2	nuclear receptor binding factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117461674-2	chr8	117461574	117461774	+	838.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001163262)	TTS (NM_001163262)	2409.0	NR_106046	102465653.0		NR_106046	ENSMUSG00000098483	Mir7078	Gm27386|mmu-mir-7078	microRNA 7078	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-50567626-4	chr9	50567520	50567720	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008360, intron 3 of 7)	intron (NM_008360, intron 3 of 7)	-6352.0	NM_025687	66654.0	Mm.442255	NM_025687	ENSMUSG00000032065	Tex12	5730518K06Rik	testis expressed gene 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-138228619-2	chr5	138228519	138228719	+	613.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013773, intron 1 of 5)	intron (NM_001013773, intron 1 of 5)	2715.0	NM_001013773	381680.0	Mm.156846	NM_001013773	ENSMUSG00000047592	Nxpe5	-	neurexophilin and PC-esterase domain family, member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80371411-4	chr7	80371330	80371530	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172903)	promoter-TSS (NM_172903)	-55.0	NM_172903	140481.0	Mm.269245	NM_172903	ENSMUSG00000038886	Man2a2	1700052O22Rik|4931438M07Rik|AI480988|MX|Man IIx	mannosidase 2, alpha 2	protein-coding	3.40874370784545	2.32245111053224	1.51150585500438	3.19772104632738	3.67921049724683	2.67896070214889	2.05394387458894	3.71002368162988	0.655602368186431	0.422584071716986	0.900322118218157
Merged-chr7-25278993-4	chr7	25278911	25279111	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302811, intron 2 of 20)	CpG	-3168.0	NM_027882	71722.0	Mm.28833	NM_027882	ENSMUSG00000005442	Cic	1200010B10Rik|mKIAA0306	capicua transcriptional repressor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-65054700-1	chr1	65054600	65054800	+	578.0	f0_c57.idr	Intergenic	RLTR45|LTR|ERVK	-3537.0	NM_007777	12968.0	Mm.258170	NM_007777	ENSMUSG00000070870	Cryge	Cryg-2|Cryg-6|DGcry-2|Elo	crystallin, gamma E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-18840683-4	chr7	18840605	18840805	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153760, intron 1 of 4)	intron (NM_153760, intron 1 of 4)	739.0	NM_153760	243864.0	Mm.233503	NM_153760	ENSMUSG00000040987	Mill2	Micb	MHC I like leukocyte 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-80833733-4	chr12	80833599	80833799	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178682, intron 2 of 5)	intron (NM_178682, intron 2 of 5)	43167.0	NM_001242419	217684.0	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10244497-2	chr19	10244397	10244597	+	645.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_198114)	TTS (NM_198114)	-3749.0	NM_001033481	225908.0	Mm.329716	NM_001033481	ENSMUSG00000036098	Myrf	6030439E18|Gm1804|Gm98|Mrf	myelin regulatory factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35766546-4	chr17	35766386	35766586	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5964.0	NR_045459	74601.0	Mm.410840	NR_045459	ENSMUSG00000092171	4833427F10Rik	-	RIKEN cDNA 4833427F10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-47303540-4	chr4	47303439	47303639	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009928, intron 33 of 39)	intron (NM_009928, intron 33 of 39)	-49683.0	NM_001312868	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123973301-2	chr5	123973201	123973401	+	669.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145070)	promoter-TSS (NM_145070)	-327.0	NM_145070	29816.0	Mm.149954	NM_145070	ENSMUSG00000000915	Hip1r	AA410023|mKIAA0655	huntingtin interacting protein 1 related	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-43785890-2	chr13	43785790	43785990	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009856, intron 2 of 4)	intron (NM_009856, intron 2 of 4)	778.0	NM_001289915	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-117905868-2	chr6	117905768	117905968	+	782.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166431)	promoter-TSS (NM_001166431)	-914.0	NM_001166430	98758.0	Mm.422979	NM_133834	ENSMUSG00000042079	Hnrnpf	4833420I20Rik|AA407306|Hnrpf	heterogeneous nuclear ribonucleoprotein F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-40558822-4	chr12	40558723	40558923	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	112770.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-106148099-4	chr8	106148021	106148221	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-2233.0	NM_133792	192654.0	Mm.284770	NM_133792	ENSMUSG00000031903	Pla2g15	ACS|C87498|LLPL|Lpla2|Lypla3	phospholipase A2, group XV	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-92636962-2	chr12	92636862	92637062	+	583.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	X2_LINE|LINE|CR1	-787805.0	NM_011344	20338.0	Mm.250605	NM_011344	ENSMUSG00000020964	Sel1l	AW493766|Sel1h|mKIAA4137	sel-1 suppressor of lin-12-like (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10023836-4	chr19	10023728	10023928	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153790, intron 1 of 10)	intron (NR_153790, intron 1 of 10)	5634.0	NM_001347430	74760.0	Mm.281969	NM_144538	ENSMUSG00000024663	Rab3il1	1200014K04Rik|AI115013|C76746|Rab3ail1	RAB3A interacting protein (rabin3)-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129827387-2	chr4	129827287	129827487	+	782.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164745, intron 1 of 5)	intron (NM_001164745, intron 1 of 5)	6679.0	NM_001164745	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-109114508-2	chr4	109114408	109114608	+	578.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355190, intron 2 of 21)	B1_Mus2|SINE|Alu	3528.0	NM_173350	100273.0	Mm.366315	NM_133885	ENSMUSG00000028559	Osbpl9	2600011I06Rik|AU015843|Orp-9	oxysterol binding protein-like 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55114251-2	chr14	55114151	55114351	+	558.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177049, intron 2 of 5)	CpG	2684.0	NM_177049	319984.0	Mm.19047	NM_177049	ENSMUSG00000022208	Jph4	9330157P13Rik|JP-4|JPHL1	junctophilin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-43034492-4	chr9	43034392	43034592	+	713.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359232, intron 4 of 40)	intron (NM_001359232, intron 4 of 40)	71226.0	NM_001359232	69632.0	Mm.275266	NM_027144	ENSMUSG00000059495	Arhgef12	2310014B11Rik|AU019857|Larg|mKIAA0382	Rho guanine nucleotide exchange factor (GEF) 12	protein-coding	3.56618035308893	3.01811131133742	2.77778126149783	3.96280617011598	3.80465644243977	3.04111293665712	2.800763673694	3.8789682372664	0.0788306764655289	0.896881539073912	0.998431161219273
Merged-chr13-110568669-4	chr13	110568572	110568772	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	173628.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-26697480-1	chr8	26697380	26697580	+	1000.0	f0_c57.idr	Intergenic	Intergenic	126943.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	4.70025664953448	5.2812797206109	4.21398110285527	4.26830615339515	4.28471248682653	4.0333166526536	3.89860178909363	3.92464347484364	-0.820517012168399	0.0517111078843601	0.332610725016022
Merged-chr7-73528581-4	chr7	73528482	73528682	+	882.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081345, intron 2 of 38)	intron (NM_001081345, intron 2 of 38)	13164.0	NM_001081345	244059.0	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-157386697-1	chr1	157386597	157386797	+	693.333313	f0_balb.idr	intron (NM_177644, intron 1 of 17)	intron (NM_177644, intron 1 of 17)	-25655.0	NR_027984	69953.0	Mm.286863	NM_027274	ENSMUSG00000049881	2810025M15Rik	AI429618	RIKEN cDNA 2810025M15 gene	ncRNA	2.55943549269466	1.44667946385112	1.39810301945779	2.80315354831973	2.91733947455091	2.21021190311364	3.49827930171067	3.39344849927747	1.65471944193165	0.0576429773808746	0.355313252702313
Merged-chr5-34547172-1	chr5	34547072	34547272	+	637.0	f1_balb.idr	intron (NM_001145858, intron 1 of 12)	intron (NM_001145858, intron 1 of 12)	-2404.0	NM_001145859	24055.0	Mm.5012	NM_011893	ENSMUSG00000054520	Sh3bp2	3BP2	SH3-domain binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-105496837-3	chr5	105496740	105496940	+	940.7333369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-22631.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55927978-2	chr19	55927878	55928078	+	717.333313	f1_balb.idr|f1_c57bl6.idr	intron (NR_138565, intron 15 of 15)	intron (NR_138565, intron 15 of 15)	32657.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116026536-2	chr11	116026436	116026636	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2032.0	NM_008211	15081.0	Mm.18516	NM_008211	ENSMUSG00000016559	H3f3b	9430068D06Rik|H3.3B	H3 histone, family 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-134727580-2	chr4	134727480	134727680	+	895.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23290.0	NM_207237	230815.0	Mm.18905	NM_207237	ENSMUSG00000037306	Man1c1	AI593348	mannosidase, alpha, class 1C, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-48101098-4	chr17	48101041	48101241	+	976.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10763.0	NR_110485	320638.0	Mm.404482	NR_110485		A730006G06Rik	-	RIKEN cDNA A730006G06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-85834325-2	chr13	85834225	85834425	+	758.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3A|LINE|L1	212470.0	NM_007749	12867.0	Mm.378898	NM_007749	ENSMUSG00000017778	Cox7c	COXVIIc|Cox7c1	cytochrome c oxidase subunit VIIc	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-40782105-2	chr4	40782005	40782205	+	676.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24220.0	NM_021535	74255.0	Mm.289929	NM_021535	ENSMUSG00000028409	Smu1	2600001O03Rik|2610203K23Rik|AB044414|AI845086|AW556129|Bwd	smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-74262565-2	chr1	74262465	74262665	+	768.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_029711, exon 7 of 10)	exon (NM_029711, exon 7 of 10)	-16035.0	NM_174985	227289.0	Mm.246587	NM_174985	ENSMUSG00000064272	Gpbar1	BG37|GPCR|GPR131|M-BAR|TGR5	G protein-coupled bile acid receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24632645-4	chr17	24632559	24632759	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286720)	promoter-TSS (NM_001286720)	-23.0	NM_001357615	18207.0	Mm.148315	NM_008743	ENSMUSG00000041429	Nthl1	Nth1|Octs3	nth (endonuclease III)-like 1 (E.coli)	protein-coding	3.3588619535557	4.48114780109954	3.35978121690097	4.90224688465158	4.15133358559572	3.90765165614138	4.56909370142182	4.44133204162626	0.123404477736749	0.801984016532944	0.998431161219273
Merged-chr15-53415994-4	chr15	53415893	53416093	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69810.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59027922-1	chr15	59027822	59028022	+	678.0	f0_balb.idr	intron (NM_144800, intron 3 of 14)	intron (NM_144800, intron 3 of 14)	54104.0	NM_001146180	211401.0	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5640978-2	chr17	5640878	5641078	+	835.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	ORR1B1|LTR|ERVL-MaLR	148378.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-64153379-4	chr13	64153274	64153474	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175494)	promoter-TSS (NM_175494)	-175.0	NM_175494	238673.0	Mm.300065	NM_175494	ENSMUSG00000044934	Zfp367	8030486J21Rik|ZFF29a|ZFF29b|Znf367	zinc finger protein 367	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-137969375-3	chr3	137969268	137969468	+	946.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011932, intron 1 of 8)	intron (NM_011932, intron 1 of 8)	12181.0	NM_001310753	26377.0	Mm.254835	NM_011932	ENSMUSG00000028159	Dapp1	Bam32	dual adaptor for phosphotyrosine and 3-phosphoinositides 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-94076959-4	chr8	94076821	94077021	+	837.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026116, intron 13 of 16)	intron (NM_026116, intron 13 of 16)	21890.0	NM_026116	67378.0	Mm.292107	NM_026116	ENSMUSG00000031755	Bbs2	2410125H22Rik|AI447581	Bardet-Biedl syndrome 2 (human)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-88252364-2	chr11	88252264	88252464	+	673.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41679.0	NM_028859	74297.0	Mm.207320	NM_028859	ENSMUSG00000034031	Ccdc182	1700106J16Rik	coiled-coil domain containing 182	protein-coding	0.0493992544795473	0.54189281117054	-0.0859064721615614	-0.0900331048449103	0.0536533494348495	0.553127264162033	-0.0847276532047559	-0.0893118442418122	0.0397771334702483	0.985300056049408	1
Merged-chr6-22347657-4	chr6	22347528	22347728	+	997.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138587, intron 1 of 9)	intron (NM_138587, intron 1 of 9)	8453.0	NM_138587	27999.0	Mm.490307	NM_138587	ENSMUSG00000029672	Fam3c	D6Wsu176e|Ilei	family with sequence similarity 3, member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83615699-4	chr11	83615602	83615802	+	790.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_036453, intron 5 of 8)	intron (NR_036453, intron 5 of 8)	-22615.0	NM_009139	20305.0	Mm.137	NM_009139	ENSMUSG00000018927	Ccl6	MRP-1|Scya6|c10	chemokine (C-C motif) ligand 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-23007910-2	chr2	23007810	23008010	+	674.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077190, intron 1 of 10)	intron (NM_001077190, intron 1 of 10)	32331.0	NM_001077192	11308.0	Mm.205647	NM_007380	ENSMUSG00000058835	Abi1	E3B1|NAP1|Ssh3bp1|abi-1	abl-interactor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36133266-4	chr1	36133169	36133369	+	981.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	11044.0	NR_105862	102465540.0		NR_105862	ENSMUSG00000098752	Mir6897	Gm27652|mmu-mir-6897	microRNA 6897	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-106529232-4	chr7	106529132	106529332	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-88159.0	NR_003967	209380.0	Mm.461779	NM_001001318		Gm4759	EG209380	GTPase, very large interferon inducible 1 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-32008891-1	chr12	32008791	32008991	+	1000.0	f0_c57.idr	intron (NM_011158, intron 2 of 10)	B1_Mur2|SINE|Alu	52388.0	NM_011158	19088.0	Mm.25594	NM_011158	ENSMUSG00000002997	Prkar2b	AI451071|AW061005|PKARIIbeta|Pkarb2|RII(beta)	protein kinase, cAMP dependent regulatory, type II beta	protein-coding	3.19698675998618	1.35245137208192	1.52967423788425	2.61962981623541	1.58031769348124	1.36307470741164	1.03281692255404	1.67301553745945	-2.4357807326353	0.0256584240975248	0.213192363103949
Merged-chr12-95738312-4	chr12	95738193	95738393	+	865.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201518, intron 1 of 1)	intron (NM_201518, intron 1 of 1)	46067.0	NM_201518	399558.0	Mm.341948	NM_201518	ENSMUSG00000047414	Flrt2	-	fibronectin leucine rich transmembrane protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-128245132-4	chr1	128245054	128245254	+	997.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356529, intron 1 of 12)	intron (NM_001356529, intron 1 of 12)	1017.0	NM_001356529	67812.0	Mm.293321	NM_026390	ENSMUSG00000026353	Ubxn4	1300013G12Rik|Ubxd2|mKIAA0242	UBX domain protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140648687-4	chr5	140648571	140648771	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001308040, intron 1 of 12)	CpG	360.0	NM_001308040	78339.0	Mm.28947	NM_175274	ENSMUSG00000036565	Ttyh3	2900029G13Rik|AI414930|TTY3|mTTY3	tweety family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-117495480-1	chr5	117495380	117495580	+	753.0	f1_c57bl6.idr	intron (NM_001312914, intron 1 of 19)	intron (NM_001312914, intron 1 of 19)	81478.0	NM_001312914	333050.0	Mm.437947	NM_001034873	ENSMUSG00000061578	Ksr2	-	kinase suppressor of ras 2	protein-coding	0.1272976956496	1.02439060143958	0.142406972224602	0.713239734693038	0.652094660942468	0.151317423987041	0.144016591180909	0.137745073319021	-1.66858952720773	0.428582891658413	1
Merged-chr13-113489677-2	chr13	113489577	113489777	+	585.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045501, intron 1 of 6)	URR1B|DNA|hAT-Charlie	13167.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-17835946-4	chr5	17835828	17836028	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159555)	promoter-TSS (NM_001159555)	-32.0	NM_007643	12491.0	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 molecule	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-92484421-3	chr2	92484334	92484534	+	860.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23916.0	NM_145832	228368.0	Mm.273990	NM_145832	ENSMUSG00000049922	Slc35c1	E430007K15Rik|fuct1	solute carrier family 35, member C1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-76947250-1	chr12	76947150	76947350	+	545.0	f1_c57bl6.idr	intron (NM_001361663, intron 3 of 4)	intron (NM_001361663, intron 3 of 4)	14998.0	NM_008558	17187.0	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-15255850-2	chr9	15255750	15255950	+	845.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026955, intron 1 of 3)	RMER17B|LTR|ERVK	16805.0	NM_026955	69137.0	Mm.41396	NM_026955	ENSMUSG00000031937	Vstm5	2200002K05Rik	V-set and transmembrane domain containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-24275302-1	chr6	24275202	24275402	+	953.0	f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-107210.0	NM_019481	55961.0	Mm.19299	NM_019481	ENSMUSG00000029700	Slc13a1	AI314066|AI987826|NaSi-1|Nas1	solute carrier family 13 (sodium/sulfate symporters), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99130227-4	chr7	99130132	99130332	+	921.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 1 of 14)	intron (NM_178635, intron 1 of 14)	10912.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	2.32464673811569	1.75207529353041	1.50582627184963	2.45064546733377	2.26482261961753	2.22083989721765	2.02033673211248	1.47844485156312	-0.113200875250364	0.90709314171313	0.998431161219273
Merged-chr8-122447700-2	chr8	122447600	122447800	+	785.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_015497, intron 1 of 2)	MTC|LTR|ERVL-MaLR	3622.0	NR_015497	319574.0	Mm.271989	NR_015497	ENSMUSG00000110656	Gm20735	-	predicted gene, 20735	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28811417-4	chr7	28811321	28811521	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177301, intron 1 of 12)	CpG	531.0	NM_177301	15388.0	Mm.9043	NM_177301	ENSMUSG00000015165	Hnrnpl	C79783|D830027H13Rik|Hnrpl	heterogeneous nuclear ribonucleoprotein L	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-23261603-2	chr11	23261503	23261703	+	731.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001035226, intron 2 of 25)	B2_Mm1a|SINE|B2	5562.0	NM_134014	103573.0	Mm.217547	NM_134014	ENSMUSG00000020290	Xpo1	AA420417|Crm1|Exp1	exportin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-18881488-2	chr5	18881388	18881588	+	597.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	345067.0	NR_102341	70832.0	Mm.398993	NR_102341	ENSMUSG00000097626	4921504A21Rik	-	RIKEN cDNA 4921504A21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-26980085-4	chr8	26980013	26980213	+	968.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001101502, exon 2 of 2)	3' UTR (NM_001101502, exon 2 of 2)	2777.0	NM_001110508	353310.0	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-39369358-2	chr1	39369258	39369458	+	961.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252219, intron 2 of 4)	intron (NM_001252219, intron 2 of 4)	1507.0	NM_001252218	114641.0	Mm.379302	NM_053257	ENSMUSG00000073702	Rpl31	Dts	ribosomal protein L31	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-34880766-2	chr6	34880666	34880866	+	889.900024	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001013366, exon 15 of 15)	3' UTR (NM_001013366, exon 15 of 15)	-2701.0	NM_001135611	78412.0	Mm.248440	NM_199145	ENSMUSG00000046806	3110062M04Rik	AL023049|Cyren|Mri	RIKEN cDNA 3110062M04 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27026118-3	chr17	27025993	27026193	+	855.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149749, intron 1 of 6)	intron (NR_149749, intron 1 of 6)	2534.0	NM_007523	12018.0	Mm.2443	NM_007523	ENSMUSG00000057789	Bak1	Bak|N-BAK1|N-Bak	BCL2-antagonist/killer 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-64448192-1	chr13	64448092	64448292	+	570.25	f0_balb.idr	Intergenic	Intergenic	15639.0	NM_053180	105278.0	Mm.74982	NM_053180	ENSMUSG00000021483	Cdk20	4932702G04Rik|AU019450|AW558027|CDCH|Ccrk|PNQLARE|p42	cyclin-dependent kinase 20	protein-coding	1.15857442691841	2.56317203611353	1.25896679701168	1.22249662145768	1.79832066786654	2.81320588554808	0.996205818003429	1.76982896092668	0.723732464438557	0.531646068799616	0.951191400754218
Merged-chr13-51397971-4	chr13	51397842	51398042	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10676.0	NM_010101	13610.0	Mm.136736	NM_010101	ENSMUSG00000067586	S1pr3	AI132464|Edg3|Lpb3|S1p3	sphingosine-1-phosphate receptor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-100423106-4	chr15	100423009	100423209	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356952)	promoter-TSS (NM_001356952)	-54.0	NM_008732	18174.0	Mm.234608	NM_008732	ENSMUSG00000023030	Slc11a2	DCT1|DMT1|Nramp2|mk|van	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-28414209-3	chr10	28414120	28414320	+	970.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359356, intron 7 of 30)	intron (NM_001359356, intron 7 of 30)	-254140.0	NM_001305663	210757.0	Mm.123021	NM_178666	ENSMUSG00000049109	Themis	E430004N04Rik|Gasp|Spot|Tsepa|thylex	thymocyte selection associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70352709-3	chr8	70352645	70352845	+	775.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030680, intron 1 of 23)	CpG	534.0	NM_030680	19704.0	Mm.258280	NM_030680	ENSMUSG00000058301	Upf1	B430202H16Rik|NORF1|PNORF-1|Rent1|Upflp	UPF1 regulator of nonsense transcripts homolog (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-43848668-4	chr6	43848590	43848790	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-182412.0	NM_001311111	29807.0	Mm.320979	NM_013861	ENSMUSG00000029735	Tpk1	-	thiamine pyrophosphokinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-170742608-4	chr1	170742518	170742718	+	997.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081304, intron 15 of 15)	Lx8|LINE|L1	98086.0	NM_177068	320078.0	Mm.287131	NM_177068	ENSMUSG00000038463	Olfml2b	1110018N05Rik|4832415H08Rik|AI467542	olfactomedin-like 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-96400946-2	chr10	96400846	96401046	+	582.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	174739.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-129536383-4	chr3	129536280	129536480	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130450, intron 2 of 4)	intron (NM_130450, intron 2 of 4)	-3992.0	NR_153368	102639747.0	Mm.393257	NR_153368		Gm35986	-	predicted gene, 35986	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-74967062-4	chr10	74966992	74967192	+	922.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010311)	promoter-TSS (NM_010311)	-85.0	NM_010311	14687.0	Mm.32595	NM_010311	ENSMUSG00000040009	Gnaz	AI847979|Gz	guanine nucleotide binding protein, alpha z subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-69654452-4	chr8	69654343	69654543	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177527)	promoter-TSS (NM_001177527)	-113.0	NM_001177527	636741.0	Mm.480188	NM_001177527	ENSMUSG00000091764	Zfp964	4732490P12|EG636741|Gm7187	zinc finger protein 964	protein-coding	5.66586481058127	5.83148042410857	5.35028834452147	5.2167790595599	6.35413047538971	5.86705394200791	5.62495570971757	6.36605163342303	0.62374388191485	0.0213321030182939	0.187209377782892
Merged-chr7-55969613-4	chr7	55969527	55969727	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015495, intron 1 of 5)	ORR1E-int|LTR|ERVL-MaLR	7096.0	NR_015495	320845.0	Mm.274484	NM_001033396		A230056P14Rik	-	RIKEN cDNA A230056P14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-83540814-2	chr9	83540714	83540914	+	757.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7524.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	0.192595877835057	0.067528131498322	0.0619440894531865	0.682632713069493	0.321762327211564	0.0687868956684949	0.0631756865418643	0.690443340041081	0.225911563994048	0.913122147849257	1
Merged-chr1-79762975-4	chr1	79762863	79763063	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-1194.0	NM_027057	69368.0	Mm.293273	NM_027057	ENSMUSG00000073643	Wdfy1	1700013B03Rik|1700120F24Rik|FENS-1|Jr1|WDF1|ZFYVE17|mKIAA1435	WD repeat and FYVE domain containing 1	protein-coding	5.91141109395663	6.73036966581052	5.73987611721174	6.75667863199474	5.10028034985424	5.33226846280576	4.67556346079482	5.83256246159431	-1.1729434774609	0.000197911096278862	0.00534805705665268
Merged-chr2-150362763-4	chr2	150362677	150362877	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027017)	promoter-TSS (NM_027017)	-12.0	NM_027017	69277.0	Mm.272470	NM_027017	ENSMUSG00000063364	3300002I08Rik	2900016H11Rik	RIKEN cDNA 3300002I08 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-84615306-4	chr12	84615185	84615385	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008992, intron 2 of 18)	intron (NM_008992, intron 2 of 18)	2181.0	NM_008992	19300.0	Mm.229109	NM_008992	ENSMUSG00000021240	Abcd4	P69r|P70R|Pxmp1l	ATP-binding cassette, sub-family D (ALD), member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-27024717-2	chr8	27024617	27024817	+	797.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153592, intron 1 of 11)	intron (NM_153592, intron 1 of 11)	918.0	NM_153592	244373.0	Mm.277699	NM_153592	ENSMUSG00000031483	Erlin2	BC036333|C87251|Spfh2	ER lipid raft associated 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123149834-4	chr5	123149722	123149922	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040398, intron 6 of 16)	intron (NM_001040398, intron 6 of 16)	7629.0	NM_001040398	208043.0	Mm.250391	NM_177581	ENSMUSG00000038384	Setd1b	AA516740|BC035291|KMT2G|mKIAA1076	SET domain containing 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-124647887-4	chr2	124647771	124647971	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291000, intron 1 of 18)	intron (NM_001291000, intron 1 of 18)	-5710.0	NM_199240	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-3279572-4	chr8	3279465	3279665	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010568)	promoter-TSS (NM_010568)	52.0	NM_010568	16337.0	Mm.268003	NM_010568	ENSMUSG00000005534	Insr	4932439J01Rik|CD220|D630014A15Rik|IR|IR-A|IR-B	insulin receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34912294-4	chr17	34912197	34912397	+	911.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286575, intron 25 of 27)	intron (NM_001286575, intron 25 of 27)	-2169.0	NM_023557	70129.0	Mm.183126	NM_023557	ENSMUSG00000007034	Slc44a4	2210409B01Rik|NG22|mTPPT1	solute carrier family 44, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-96668828-2	chr9	96668728	96668928	+	671.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37325.0	NM_053268	114713.0	Mm.124502	NM_053268	ENSMUSG00000032413	Rasa2	5430433H21Rik|AA517451|AU023900|GAP1m	RAS p21 protein activator 2	protein-coding	-2.05752322593321	-2.15521190974092	-2.16307242109104	-2.16952927915413	-2.17938029103484	-2.15350850414045	-2.16129297361887	-2.16837350464794	-0.683654500252594	0.846597994014493	1
Merged-chr11-94689153-4	chr11	94689050	94689250	+	851.645874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	-11657.0	NM_145828	217119.0	Mm.100638	NM_145828	ENSMUSG00000020868	Xylt2	E030002B02Rik|XT-II|XT2|xylT-II	xylosyltransferase II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115612939-4	chr11	115612835	115613035	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001243586)	promoter-TSS (NM_001243586)	34.0	NM_001243584	69674.0	Mm.390387	NM_027162	ENSMUSG00000020743	Mif4gd	1110014L05Rik|2310075G12Rik	MIF4G domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-73098976-3	chr16	73098886	73099086	+	750.416687	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	435837.0	NM_019413	19876.0	Mm.310772	NM_019413	ENSMUSG00000022883	Robo1	AW494633|AW742721|DUTT1|Gm310	roundabout guidance receptor 1	protein-coding	4.35550394528354	1.76016567457149	2.8922326476828	4.1135675354384	3.4030258240994	3.47775671977238	3.26302374283349	3.42487325944734	-0.377409044572691	0.582191723236282	0.966599221005409
Merged-chr10-13540089-4	chr10	13539983	13540183	+	917.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019961, intron 3 of 11)	intron (NM_019961, intron 3 of 11)	-12824.0	NM_025748	66757.0	Mm.331841	NM_025748	ENSMUSG00000019808	Adat2	4933426M09Rik|Deadc1	adenosine deaminase, tRNA-specific 2	protein-coding	1.67594305473696	2.46340546743215	1.50663015885759	1.77464778075416	1.21543542534398	2.64759779810497	1.05194828934394	1.47085391089785	-0.31198561820687	0.781189452335714	0.998431161219273
Merged-chr3-138518143-2	chr3	138518043	138518243	+	827.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-8048.0	NM_007917	13684.0	Mm.3941	NM_007917	ENSMUSG00000028156	Eif4e	EG668879|Eif4e-ps|If4e|eIF-4E	eukaryotic translation initiation factor 4E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-69790677-4	chr12	69790580	69790780	+	958.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183294)	promoter-TSS (NM_183294)	27.0	NM_183294	71091.0	Mm.132325	NM_183294	ENSMUSG00000020990	Cdkl1	4933411O17Rik	cyclin-dependent kinase-like 1 (CDC2-related kinase)	protein-coding	0.788331066475385	1.3705341135334	1.65409799132332	0.990291914836339	1.43220197859023	1.0481733274962	1.01931746234121	1.51413632176391	0.0967498203255905	0.941952292248409	0.998431161219273
Merged-chr11-98589608-2	chr11	98589508	98589708	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-2363.0	NM_025661	66612.0	Mm.180546	NM_025661	ENSMUSG00000038150	Ormdl3	2810011N17Rik|AI315223	ORM1-like 3 (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-114079493-4	chr7	114079362	114079562	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025846, intron 1 of 5)	intron (NM_025846, intron 1 of 5)	38319.0	NM_025846	66922.0	Mm.276572	NM_025846	ENSMUSG00000055723	Rras2	2610016H24Rik|C86394|TC21	related RAS viral (r-ras) oncogene 2	protein-coding	5.29122854166705	4.93476343449743	5.27330398137877	5.2064596426302	5.41882971917699	5.25736473990553	4.90468731539224	4.88815892211319	-0.0562995251020647	0.853131408312081	0.998431161219273
Merged-chr16-21908668-4	chr16	21908607	21908807	+	814.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172821, exon 7 of 13)	exon (NM_172821, exon 7 of 13)	16738.0	NM_172821	71751.0	Mm.420837	NM_172821	ENSMUSG00000033618	Map3k13	C130026N12Rik|LZK	mitogen-activated protein kinase kinase kinase 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-55365408-1	chr13	55365308	55365508	+	545.0	f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-2625.0	NM_025828	66890.0	Mm.38868	NM_025828	ENSMUSG00000021484	Lman2	1110003H06Rik|1300009F09Rik|AA408240|AL023023|AU040819|GP36B|VIP36	lectin, mannose-binding 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-113624048-4	chr6	113623947	113624147	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009507)	promoter-TSS (NM_009507)	26.0	NM_009507	22346.0	Mm.29407	NM_009507	ENSMUSG00000033933	Vhl	Vhlh	von Hippel-Lindau tumor suppressor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-101595811-4	chr14	101595702	101595902	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081278, intron 1 of 18)	intron (NM_001081278, intron 1 of 18)	13389.0	NM_001081278	210789.0	Mm.320639	NM_173380	ENSMUSG00000033083	Tbc1d4	5930406J04Rik|A930035N22|AV295684|As160	TBC1 domain family, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-113913735-6	chr13	113913632	113913832	+	991.511108	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172595, intron 1 of 4)	intron (NM_172595, intron 1 of 4)	119224.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-82793297-4	chr1	82793188	82793388	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24832.0	NM_025453	66261.0	Mm.46325	NM_025453	ENSMUSG00000026149	Tm4sf20	1810018L02Rik	transmembrane 4 L six family member 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-91327750-2	chr12	91327650	91327850	+	641.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_181815, intron 9 of 25)	MTD|LTR|ERVL-MaLR	56659.0	NM_181815	75216.0	Mm.312204	NM_181815	ENSMUSG00000061533	Cep128	4930534B04Rik|5430424K18Rik|AI449708|AI480494|E230024F20	centrosomal protein 128	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-86591603-4	chr11	86591501	86591701	+	807.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356531, intron 10 of 11)	intron (NM_001356531, intron 10 of 11)	-7443.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-75061022-2	chr10	75060922	75061122	+	599.166626	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001081412, exon 1 of 23)	5' UTR (NM_001081412, exon 1 of 23)	126.0	NM_001081412	110279.0	Mm.333722	NM_001081412	ENSMUSG00000009681	Bcr	5133400C09Rik|AI561783|AI853148|mKIAA3017	breakpoint cluster region	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-121950362-8	chr8	121950202	121950402	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001110100)	promoter-TSS (NM_001110100)	-190.0	NM_016812	53325.0	Mm.287163	NM_016812	ENSMUSG00000025316	Banp	AA408158|SMAR1	BTG3 associated nuclear protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-22042512-4	chr13	22042393	22042593	+	791.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178198)	promoter-TSS (NM_178198)	456.0	NM_178186	319167.0	Mm.263165	NM_178186	ENSMUSG00000069301	Hist1h2ag	-	histone cluster 1, H2ag	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152525120-4	chr1	152525020	152525220	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 15 of 17)	intron (NM_016846, intron 15 of 17)	100097.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-19893987-4	chr4	19893886	19894086	+	868.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175406, intron 2 of 7)	intron (NM_175406, intron 2 of 7)	28580.0	NM_175406	242341.0	Mm.19298	NM_175406	ENSMUSG00000028238	Atp6v0d2	1620401A02Rik|AI324824|V-ATPase	ATPase, H+ transporting, lysosomal V0 subunit D2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125163869-5	chr6	125163675	125163875	+	951.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289726, intron 2 of 6)	intron (NM_001289726, intron 2 of 6)	1998.0	NM_008084	14433.0	Mm.304088	NM_008084	ENSMUSG00000057666	Gapdh	Gapd	glyceraldehyde-3-phosphate dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-27577817-4	chr7	27577704	27577904	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175107, intron 8 of 9)	MTC|LTR|ERVL-MaLR	-13748.0	NM_001110208	11652.0	Mm.177194	NM_007434	ENSMUSG00000004056	Akt2	2410016A19Rik|AW554154|PKB|PKBbeta	thymoma viral proto-oncogene 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72409727-2	chr6	72409627	72409827	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-4581.0	NM_019802	56316.0	Mm.19937	NM_019802	ENSMUSG00000053460	Ggcx	-	gamma-glutamyl carboxylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-27183831-2	chr14	27183731	27183931	+	871.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289686, intron 2 of 12)	intron (NM_001289686, intron 2 of 12)	39838.0	NM_001289686	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-90955391-1	chr8	90955291	90955491	+	674.0	f0_c57.idr	intron (NM_177224, intron 3 of 39)	intron (NM_177224, intron 3 of 39)	23142.0	NM_001310530	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-143470095-2	chr7	143469995	143470195	+	997.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3660.0	NM_008767	18400.0	Mm.271740	NM_008767	ENSMUSG00000000154	Slc22a18	AW260131|BWR1A|BWSCR1A|HET|ITM|Impt1|Orctl2|Slc22a1l|TSSC5|p45-BWR1A	solute carrier family 22 (organic cation transporter), member 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-101751625-2	chr13	101751525	101751725	+	554.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077495, intron 2 of 15)	intron (NM_001077495, intron 2 of 15)	16592.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-34489371-3	chr14	34489278	34489478	+	850.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009758, intron 1 of 12)	L2|LINE|L2	13168.0	NM_009758	12166.0	Mm.237825	NM_009758	ENSMUSG00000021796	Bmpr1a	1110037I22Rik|ALK-3|ALK3|AU045487|BMPR-1A|BMPR-IA|Bmpr|SKR5	bone morphogenetic protein receptor, type 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-54684520-3	chr1	54684468	54684668	+	725.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081433, intron 16 of 27)	intron (NM_001081433, intron 16 of 27)	-126884.0	NM_001163314	241062.0	Mm.103539	NM_175508	ENSMUSG00000073678	Pgap1	5033403E17Rik|9030223K07Rik|A530084K22|D230012E17Rik|oto	post-GPI attachment to proteins 1	protein-coding	0.872570242546603	0.424746488208058	0.740709967227011	0.713624254876811	0.78475405369758	0.426355425100427	1.09333440032347	0.413056693830854	0.116358767136567	0.945879052820966	1
Merged-chr12-108209238-2	chr12	108209138	108209338	+	883.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159910, intron 3 of 5)	intron (NM_001159910, intron 3 of 5)	29500.0	NM_009832	12454.0	Mm.474441	NM_009832	ENSMUSG00000021258	Ccnk	AW123198|AW413594|CPR4|CycK	cyclin K	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-41713463-4	chr4	41713349	41713549	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027278)	promoter-TSS (NM_027278)	68.0	NM_027278	69961.0	Mm.425182	NM_027278	ENSMUSG00000036114	Rpp25l	2810432D09Rik|AW987258|Rppl25	ribonuclease P/MRP 25 subunit-like	protein-coding	2.85525053960567	2.99036760721854	3.54465523821619	2.69790484673549	3.11489865529321	2.44310856049546	2.91331013595777	3.26637863584466	-0.153270199329316	0.815043096900841	0.998431161219273
Merged-chr12-105763877-2	chr12	105763778	105763978	+	843.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030187, intron 13 of 17)	PB1D7|SINE|Alu	-20819.0	NM_011112	18789.0	Mm.255877	NM_011112	ENSMUSG00000021111	Papola	Pap|PapIII|Plap	poly (A) polymerase alpha	protein-coding	-0.311843183099418	-0.766701022838102	-0.769777834882444	-0.772145876086986	-0.775483384570713	-0.766006314403769	-0.311767054070988	-0.771732555174591	-0.00684721864641614	0.998186576973833	1
Merged-chr7-19094642-4	chr7	19094562	19094762	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001190491)	TTS (NM_001190491)	118.0	NM_011383	20475.0	Mm.3410	NM_011383	ENSMUSG00000040841	Six5	Dmahp|MDMAHP|TrexBF	sine oculis-related homeobox 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-24460006-4	chr7	24459908	24460108	+	938.2416380000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2475.0	NM_011113	18793.0	Mm.1359	NM_011113	ENSMUSG00000046223	Plaur	Cd87|u-PAR|uPAR	plasminogen activator, urokinase receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-59653727-2	chr5	59653627	59653827	+	607.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	332275.0	NR_040683	71057.0	Mm.50817	NR_040682	ENSMUSG00000106013	4933402J10Rik	-	RIKEN cDNA 4933402J10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-84425310-4	chr2	84425190	84425390	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018782)	promoter-TSS (NM_018782)	-24.0	NM_018782	54598.0	Mm.75467	NM_018782	ENSMUSG00000059588	Calcrl	AV071593|CRLR	calcitonin receptor-like	protein-coding	3.96011120769909	3.87308309593209	3.32549374669371	4.40735623809789	3.5549374875739	3.24622402858556	2.53760744128757	3.85805965594515	-0.816890012866413	0.138907352728386	0.582323696029062
Merged-chr8-113637067-1	chr8	113636967	113637167	+	673.0	f1_balb.idr	intron (NM_001048143, intron 2 of 5)	intron (NM_001048143, intron 2 of 5)	1268.0	NM_173015	270096.0	Mm.74689	NM_173015	ENSMUSG00000078908	Mon1b	5031407H10|5033413H12Rik	MON1 homolog B, secretory traffciking associated	protein-coding	1.45325186338539	1.79906767271431	1.73156233891653	0.952854369531534	1.13887690754136	2.1782879597432	0.976327948787882	2.42021689152591	0.89962575477345	0.462079023203296	0.921194606787634
Merged-chr2-45693869-3	chr2	45693775	45693975	+	998.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2730.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120924531-2	chr11	120924431	120924631	+	612.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027745, intron 1 of 18)	MTEa|LTR|ERVL-MaLR	8341.0	NM_027745	71276.0	Mm.275751	NM_027745	ENSMUSG00000048445	Ccdc57	4933434G05Rik	coiled-coil domain containing 57	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-36555213-1	chr19	36555113	36555313	+	546.0	f0_balb.idr	intron (NM_001163471, intron 1 of 20)	intron (NM_001163471, intron 1 of 20)	574.0	NM_172637	226098.0	Mm.61107	NM_172637	ENSMUSG00000041180	Hectd2	4921524L07|A630025O09Rik|AW212605	HECT domain E3 ubiquitin protein ligase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46739583-4	chr8	46739554	46739754	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008391)	promoter-TSS (NM_008391)	-91.0	NM_008391	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118796835-2	chr9	118796735	118796935	+	602.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 3 of 13)	B4|SINE|B4	85143.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-35631400-4	chr5	35631302	35631502	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42639.0	NR_045807	74364.0	Mm.473123	NM_175208	ENSMUSG00000055061	4931431C16Rik	-	RIKEN cDNA 4931431C16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-165194485-4	chr1	165194364	165194564	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145512)	promoter-TSS (NM_145512)	-26.0	NR_151712	108735.0	Mm.288369	NM_145512	ENSMUSG00000040848	Sft2d2	2010005O13Rik|AI506168|AW561909|cI-45	SFT2 domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-56485398-1	chr8	56485298	56485498	+	584.0	f1_c57bl6.idr	promoter-TSS (NR_131020)	promoter-TSS (NR_131020)	-430.0	NR_131020	75123.0	Mm.72666	NR_131020	ENSMUSG00000110310	4930518J21Rik	-	RIKEN cDNA 4930518J21 gene	ncRNA	-0.106024655909337	-0.413951430444403	-0.0308740409303783	-0.418857520428924	-0.421823176089694	-0.41331941813496	-0.132911044517469	-0.418488047345758	-1.35067407192318	0.605684829477243	1
Merged-chr7-25281278-2	chr7	25281178	25281378	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027882)	promoter-TSS (NM_027882)	-901.0	NM_027882	71722.0	Mm.28833	NM_027882	ENSMUSG00000005442	Cic	1200010B10Rik|mKIAA0306	capicua transcriptional repressor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26212827-2	chr17	26212727	26212927	+	712.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001206335, exon 13 of 13)	3' UTR (NM_001206335, exon 13 of 13)	9886.0	NM_001081069	50782.0	Mm.109840	NM_001081069	ENSMUSG00000024186	Rgs11	C78048	regulator of G-protein signaling 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-29419040-3	chr19	29418908	29419108	+	950.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021396, intron 1 of 5)	intron (NM_021396, intron 1 of 5)	8089.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-45757072-4	chr16	45756960	45757160	+	790.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357078, intron 14 of 16)	intron (NM_001357078, intron 14 of 16)	-14105.0	NM_172511	213012.0	Mm.247453	NM_172511	ENSMUSG00000033157	Abhd10	-	abhydrolase domain containing 10	protein-coding	3.36068223699653	3.30507244343324	2.65370752442933	3.10745140018056	2.97399662902955	3.41517613796698	1.94133855157901	3.28315173181571	-0.204526134343731	0.76286059375282	0.998431161219273
Merged-chr2-171723367-2	chr2	171723267	171723467	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	239432.0	NR_040509	75655.0	Mm.396203	NR_040509	ENSMUSG00000086823	1700028P15Rik	-	RIKEN cDNA 1700028P15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-3776652-4	chr13	3776571	3776771	+	694.62085	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER57C2|LTR|ERV1	27647.0	NM_027416	70405.0	Mm.20079	NM_027416	ENSMUSG00000063130	Calml3	2310068O22Rik|AI326174	calmodulin-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-66219040-4	chr14	66218972	66219172	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	-5248.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	2.55598208915997	2.68991358407171	2.5020918811637	2.21408016980678	1.86196910759678	2.07804952975221	1.37645481302948	2.62613539799904	-0.984627875232226	0.271645473933796	0.775081570630341
Merged-chr10-81560489-4	chr10	81560465	81560665	+	857.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276288, intron 1 of 6)	intron (NM_001276288, intron 1 of 6)	1121.0	NM_001276288	14797.0	Mm.180013	NM_010347	ENSMUSG00000054452	Aes	AL024115|Esp1|Grg|Grg-5|Grg5|Tle5	amino-terminal enhancer of split	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-83693941-4	chr8	83693848	83694048	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177262, intron 1 of 21)	intron (NM_177262, intron 1 of 21)	113.0	NM_001199593	320795.0	Mm.213000	NM_177262	ENSMUSG00000057672	Pkn1	DBK|F730027O18Rik|PAK1|PRK1|Pkn|Prkcl1|Stk3	protein kinase N1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-120039817-4	chr6	120039714	120039914	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1159.0	NM_001185021	232341.0	Mm.333349	NM_198703	ENSMUSG00000045962	Wnk1	6430573H23Rik|EG406236|Hsn2|Prkwnk1|mKIAA0344	WNK lysine deficient protein kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107769703-4	chr9	107769598	107769798	+	850.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153191, intron 1 of 23)	intron (NR_153191, intron 1 of 23)	1304.0	NM_148930	83486.0	Mm.259197	NM_148930	ENSMUSG00000032580	Rbm5	D030069N10Rik	RNA binding motif protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64884410-4	chr5	64884305	64884505	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48294.0	NM_030682	21897.0	Mm.273024	NM_030682	ENSMUSG00000044827	Tlr1	-	toll-like receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-98998003-2	chr15	98997903	98998103	+	581.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	12038.0	NR_045991	75951.0	Mm.441657	NR_045991	ENSMUSG00000097587	4930578M01Rik	3010001K12Rik	RIKEN cDNA 4930578M01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-58458996-4	chr13	58458904	58459104	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55661.0	NM_001301341	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-94386386-4	chr8	94386292	94386492	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022331)	promoter-TSS (NM_022331)	-37.0	NM_001357205	64209.0	Mm.29151	NM_022331	ENSMUSG00000031770	Herpud1	Herp|Mifl|SUP	homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-110164957-4	chr7	110164858	110165058	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42899.0	NM_009516	22390.0	Mm.287173	NM_009516	ENSMUSG00000031016	Wee1	Wee1A	WEE 1 homolog 1 (S. pombe)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-141492167-3	chr3	141492059	141492259	+	828.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293561, intron 1 of 16)	intron (NM_001293561, intron 1 of 16)	26595.0	NM_009472	22253.0	Mm.24430	NM_009472	ENSMUSG00000059921	Unc5c	B130051O18Rik|Unc5h3|rcm	unc-5 netrin receptor C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-32489536-4	chr11	32489430	32489630	+	966.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361561, intron 1 of 1)	B4A|SINE|B4	34160.0	NM_173784	327900.0	Mm.260956	NM_173784	ENSMUSG00000044949	Ubtd2	4930571L24|9630054F20Rik|AI645720	ubiquitin domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-130786135-2	chr7	130786035	130786235	+	803.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081038, intron 5 of 15)	intron (NM_001081038, intron 5 of 15)	12066.0	NM_001081038	330660.0	Mm.271550	NM_001081038	ENSMUSG00000040298	Btbd16	E330040A16Rik	BTB (POZ) domain containing 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-118595115-3	chr5	118595016	118595216	+	662.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347445, intron 2 of 30)	intron (NM_001347445, intron 2 of 30)	34397.0	NM_172424	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25072864-2	chr7	25072764	25072964	+	676.916626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008168)	promoter-TSS (NM_008168)	-495.0	NM_001360067	14809.0	Mm.2879	NM_008168	ENSMUSG00000003378	Grik5	GluK5|GluRgamma2|KA2	glutamate receptor, ionotropic, kainate 5 (gamma 2)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-18013443-4	chr5	18013343	18013543	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081143, intron 5 of 7)	intron (NM_001081143, intron 5 of 7)	50873.0	NM_001081143	242851.0	Mm.332230	NM_001081143	ENSMUSG00000028777	Gnat3	Ggust|Gtn	guanine nucleotide binding protein, alpha transducing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-29953975-4	chr7	29953811	29954011	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_178384, exon 1 of 6)	5' UTR (NM_178384, exon 1 of 6)	154.0	NM_178384	72723.0	Mm.371648	NM_178384	ENSMUSG00000059975	Zfp74	2810054M15Rik|KRAB8|Zfp66|Znf569|mszf21|mszf77|zfp-74	zinc finger protein 74	protein-coding	4.70772462069969	4.84361699214794	5.60700995100599	5.24857305551237	4.33453036771776	4.55635072802761	5.05874773344767	4.63756316122268	-0.575447856696213	0.105997737544856	0.507927874471082
Merged-chr15-11968344-2	chr15	11968244	11968444	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_040447, intron 2 of 2)	MTC|LTR|ERVL-MaLR	1282.0	NR_040447	73339.0	Mm.231975	NR_040447	ENSMUSG00000099349	1700047G03Rik	-	RIKEN cDNA 1700047G03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-4658790-2	chr11	4658690	4658890	+	582.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029291, intron 7 of 19)	intron (NM_029291, intron 7 of 19)	20997.0	NM_029291	75452.0	Mm.439906	NM_029291	ENSMUSG00000020412	Ascc2	1700011I11Rik|2610034L15Rik|AI482016|ASC1p100|AW046480	activating signal cointegrator 1 complex subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-20014770-2	chr3	20014670	20014870	+	571.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001146324)	TTS (NM_001146324)	20540.0	NM_001146324	12807.0	Mm.291533	NM_080634	ENSMUSG00000027615	Hps3	coa	HPS3, biogenesis of lysosomal organelles complex 2 subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-52046952-4	chr11	52046862	52047062	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166654, intron 13 of 13)	intron (NM_001166654, intron 13 of 13)	42741.0	NM_001166653	213084.0	Mm.280557	NM_153785	ENSMUSG00000020389	Cdkl3	AI852479|B230379H01Rik	cyclin-dependent kinase-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-112646952-2	chr12	112646852	112647052	+	897.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_013929, exon 2 of 4)	exon (NM_013929, exon 2 of 4)	2124.0	NM_013929	30954.0	Mm.289812	NM_013929	ENSMUSG00000064326	Siva1	CD27bp|Siva	SIVA1, apoptosis-inducing factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-14381984-2	chr1	14381884	14382084	+	731.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3A|LINE|L1	-71785.0	NM_010164	14048.0	Mm.250185	NM_010164	ENSMUSG00000025932	Eya1	bor	EYA transcriptional coactivator and phosphatase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-4461038-4	chr2	4460951	4461151	+	888.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 2 of 23)	RSINE1|SINE|B4	60075.0	NM_001177843	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-3302209-2	chr7	3302048	3302248	+	783.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1384.0	NM_001291434	18752.0	Mm.7980	NM_011102	ENSMUSG00000078816	Prkcg	PKCgamma|Pkcc|Prkcc	protein kinase C, gamma	protein-coding	-0.0821827945224703	-0.325401247398778	0.316439565748929	-0.174716891971609	-0.336668337839111	-0.324509107112658	-0.328480854691824	-0.172010819300032	-2.66863137331875	0.251899158740321	1
Merged-chr4-83288798-3	chr4	83288676	83288876	+	719.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027238, intron 2 of 19)	ORR1D2|LTR|ERVL-MaLR	35413.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-136675932-4	chr1	136675827	136676027	+	967.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7469.0	NR_045324	100503460.0	Mm.30630	NR_045324	ENSMUSG00000097113	Gm19705	-	predicted gene, 19705	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-76195500-4	chr14	76195378	76195578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55984.0	NR_152108	72893.0	Mm.233565	NR_152108		2900040C04Rik	-	RIKEN cDNA 2900040C04 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-106433852-2	chr1	106433752	106433952	+	774.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	112779.0	NR_106164	102466254.0		NR_106164	ENSMUSG00000098344	Mir3473f	Gm27846|mmu-mir-3473f	microRNA 3473f	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-40747523-1	chr9	40747423	40747623	+	554.0	f0_balb.idr	intron (NM_133733, intron 1 of 6)	intron (NM_133733, intron 1 of 6)	-53750.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	1.62889320267852	1.82373607553096	1.16835834630897	1.71387256410109	1.98895941639736	2.53134305738938	2.35888343384278	1.56323613570916	1.58145990602208	0.123490544724432	0.550882249037229
Merged-chr13-3406828-4	chr13	3406739	3406939	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-71464.0	NR_015522	76937.0	Mm.487240	NR_015522	ENSMUSG00000097709	2810429I04Rik	AI256682	RIKEN cDNA 2810429I04 gene	ncRNA	-2.18138529563533	-2.15523716995652	-2.1631445789866	-2.16963996020037	-2.05513010215571	-2.15352360143315	-2.16135451490766	-2.16847729006863	0.759018020146679	0.829933115115583	1
Merged-chr6-106750513-4	chr6	106750413	106750613	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1476.0	NM_008370	16192.0	Mm.3448	NM_008370	ENSMUSG00000005364	Il5ra	CD125|CDw125|Il5r	interleukin 5 receptor, alpha	protein-coding	3.19826367161665	3.39807788199762	4.55584228076142	3.17999616222922	4.05682770625766	4.23479191691783	4.26882020841452	3.48797387709363	0.450001430489212	0.398138961094029	0.884402587897014
Merged-chr4-35980800-1	chr4	35980700	35980900	+	903.0	f0_balb.idr	intron (NM_001166000, intron 7 of 8)	intron (NM_001166000, intron 7 of 8)	-135596.0	NM_175516	242384.0	Mm.132507	NM_175516	ENSMUSG00000045083	Lingo2	B230217C06Rik|Lern3|Lrrn6c	leucine rich repeat and Ig domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-51577061-2	chr8	51576961	51577161	+	597.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	-779550.0	NR_151738	330767.0	Mm.246790	NR_151738	ENSMUSG00000110013	1190028D05Rik	-	RIKEN cDNA 1190028D05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-40700923-2	chr4	40700823	40701023	+	834.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025444, intron 1 of 7)	intron (NM_001025444, intron 1 of 7)	1993.0	NM_025545	66408.0	Mm.430710	NM_025545	ENSMUSG00000028411	Aptx	2410016G21Rik|AA388047|FHA-HIT	aprataxin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-134921506-2	chr4	134921406	134921606	+	613.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-2119.0	NM_023665	27981.0	Mm.331964	NM_023665	ENSMUSG00000037266	Rsrp1	2700043I21Rik|D4Ucla2|D4Wsu53e	arginine/serine rich protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75092318-4	chr11	75092202	75092402	+	983.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001002764, intron 13 of 18)	intron (NM_001002764, intron 13 of 18)	-26311.0	NR_030454	735274.0		NR_030454	ENSMUSG00000106252	Mir684-1	Mirn684-1	microRNA 684-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-26128598-4	chr11	26128503	26128703	+	967.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027973, intron 1 of 5)	intron (NR_027973, intron 1 of 5)	-73637.0	NR_105791	102466154.0		NR_105791	ENSMUSG00000099015	Mir6372	Gm27358|mmu-mir-6372	microRNA 6372	ncRNA	1.51926623951277	1.54860765425102	1.373973586167	0.724498666128679	1.15145384724231	0.749311484399282	1.25954821318895	0.726197143588147	-1.43925699006039	0.328795315302747	0.831319090967059
Merged-chr3-15126392-3	chr3	15126297	15126497	+	895.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	155196.0	NR_040550	77127.0	Mm.195792	NR_040549	ENSMUSG00000098008	A930001A20Rik	-	RIKEN cDNA A930001A20 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5273134-4	chr19	5273056	5273256	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153129)	promoter-TSS (NM_153129)	-37.0	NM_153129	107975.0	Mm.234923	NM_153129	ENSMUSG00000024855	Pacs1	AI325977	phosphofurin acidic cluster sorting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-45234877-2	chr2	45234777	45234977	+	807.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-117435.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-58552252-4	chr9	58552142	58552342	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11302.0	NM_133983	102657.0	Mm.5356	NM_133983	ENSMUSG00000035914	Cd276	6030411F23Rik|AU016588|B7RP-2|B7h3	CD276 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-126831618-3	chr3	126831514	126831714	+	848.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025438, intron 14 of 18)	intron (NM_001025438, intron 14 of 18)	111772.0	NM_001034168	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-76846320-5	chr11	76846234	76846434	+	703.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007754, exon 1 of 21)	exon (NM_007754, exon 1 of 21)	674.0	NM_007754	12874.0	Mm.276736	NM_007754	ENSMUSG00000020841	Cpd	AA960140|AW322530|D830034L15Rik	carboxypeptidase D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-36469069-4	chr3	36468956	36469156	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009673, intron 2 of 12)	intron (NM_009673, intron 2 of 12)	6468.0	NR_105976	102466786.0		NR_105976	ENSMUSG00000098808	Mir7009	Gm27472|mmu-mir-7009	microRNA 7009	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46876004-4	chr19	46875907	46876107	+	843.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033569, intron 6 of 7)	intron (NM_033569, intron 6 of 7)	86344.0	NM_029810	76952.0	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-104647287-4	chr7	104647179	104647379	+	909.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_147049)	promoter-TSS (NM_147049)	26.0	NM_147049	259051.0	Mm.223432	NM_147049	ENSMUSG00000070421	Olfr658	MOR34-5	olfactory receptor 658	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-56166365-3	chr9	56166290	56166490	+	768.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5320.0	NM_019793	56434.0	Mm.28484	NM_019793	ENSMUSG00000032324	Tspan3	1700055K04Rik|TM4-A|Tm4sf8	tetraspanin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-75809350-1	chr5	75809250	75809450	+	685.0	f1_c57bl6.idr	Intergenic	Intergenic	169078.0	NM_010612	16542.0	Mm.285	NM_010612	ENSMUSG00000062960	Kdr	6130401C07|Flk-1|Flk1|Krd-1|Ly73|VEGFR-2|VEGFR2|orv|sVEGFR-2	kinase insert domain protein receptor	protein-coding	-0.273169219812813	-0.256470012127043	-0.261909662840807	0.587554748258836	-0.272118325376676	-0.255247881267126	0.361234096922596	-0.265388945161726	-0.635239462204038	0.802927125788453	1
Merged-chr6-136661231-11	chr6	136661121	136661321	+	884.7045289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025806, intron 1 of 10)	intron (NM_025806, intron 1 of 10)	672.0	NM_025806	66857.0	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	1.46423722585337	0.9097986352529	2.31899707974508	1.55161586753718	1.47757516443259	1.36320045620871	1.31656946911178	0.87981050531834	-1.31295321615884	0.29825339024926	0.800257675359925
Merged-chr2-130449393-2	chr2	130449293	130449493	+	663.833374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163688)	promoter-TSS (NM_001163688)	-885.0	NM_008980	19262.0	Mm.224246	NM_008980	ENSMUSG00000027303	Ptpra	Ptpa|Ptpalpha|Rptpalpha|Rptra|Rptralpha	protein tyrosine phosphatase, receptor type, A	protein-coding	-0.545552962809617	-0.0206700593230789	-0.537104491414453	-0.540277050889754	-0.544767401897737	0.115101523067047	-0.536198306479445	-0.539722514297988	0.464434819266072	0.867390803141146	1
Merged-chr10-119063223-3	chr10	119063137	119063337	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12738.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-135700582-2	chr7	135700482	135700682	+	597.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081117, exon 12 of 14)	exon (NM_001081117, exon 12 of 14)	15797.0	NM_001081117	17345.0	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-59449961-4	chr11	59449834	59450034	+	968.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_037992)	promoter-TSS (NR_037992)	100.0	NM_001356454	67826.0	Mm.26680	NM_144521	ENSMUSG00000009894	Snap47	1110031B06Rik|SNAP-47	synaptosomal-associated protein, 47	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-34805026-2	chr1	34804926	34805126	+	735.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_183019, exon 2 of 10)	exon (NM_183019, exon 2 of 10)	3304.0	NM_183019	226970.0	Mm.41604	NM_183019	ENSMUSG00000037509	Arhgef4	9330140K16Rik|Asef	Rho guanine nucleotide exchange factor (GEF) 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34313102-3	chr17	34312958	34313158	+	881.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010382, intron 2 of 5)	MTC|LTR|ERVL-MaLR	7191.0	NM_010382	14969.0	Mm.22564	NM_010382	ENSMUSG00000060586	H2-Eb1	Eb|H-2Eb|H2Eb|Ia-4|Ia4	histocompatibility 2, class II antigen E beta	protein-coding	0.206067111117195	-0.0524261152465376	0.723288648686764	0.485872024480645	-0.0684864380527248	-0.0511657954737232	-0.0567891129248095	-0.0615973475072736	-3.97585908846568	0.0710065098210704	1
Merged-chr6-48435849-3	chr6	48435745	48435945	+	697.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001085415)	TTS (NM_001085415)	9245.0	NM_001085415	68910.0	Mm.2464	NM_020589	ENSMUSG00000068551	Zfp467	1190001I08Rik|AB041616|AI426952|AV017623|EZI|MNCb-3350|Znf467	zinc finger protein 467	protein-coding	2.75995744501998	2.41277788550257	1.64484276515586	2.90805955565075	1.89592621460459	2.43087940659072	1.65648130650083	2.92293040774696	-0.405407117222121	0.648461443885181	0.985197290992086
Merged-chr17-64754219-4	chr17	64754117	64754317	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008549, exon 22 of 22)	3' UTR (NM_008549, exon 22 of 22)	-12894.0	NR_105051	101202683.0	Mm.393309	NR_105051		Dreh	-	down-regulated in hepatocellular carcinoma	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-10683302-4	chr8	10683203	10683403	+	974.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	199151.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-117210986-2	chr2	117210886	117211086	+	580.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	25859.0	NR_030440	732489.0		NR_030440	ENSMUSG00000076376	Mir674	Mirn674|mir-674|mmu-mir-674	microRNA 674	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-66118395-2	chr7	66118295	66118495	+	727.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081163, intron 1 of 2)	intron (NM_001081163, intron 1 of 2)	8880.0	NM_001081163	269941.0	Mm.333916	NM_001081163	ENSMUSG00000032640	Chsy1	mKIAA0990	chondroitin sulfate synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59524234-4	chr15	59524145	59524345	+	936.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026746, intron 4 of 6)	intron (NM_026746, intron 4 of 6)	-124409.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-102276752-3	chr11	102276659	102276859	+	872.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_148953, exon 3 of 5)	exon (NM_148953, exon 3 of 5)	7936.0	NM_148953	217217.0	Mm.216432	NM_148953	ENSMUSG00000034768	Asb16	-	ankyrin repeat and SOCS box-containing 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-71106453-1	chr3	71106353	71106553	+	689.0	f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	-299162.0	NR_040556	625901.0	Mm.366028	NR_040556	ENSMUSG00000097252	Gm6634	EG625901	predicted gene 6634	ncRNA	-0.0366851524303376	0.175190283371476	-0.160667175156228	-0.163860845531638	0.188087276187791	-0.155569750373736	-0.159751972541139	0.341499997821834	1.04293456517373	0.643154489332538	1
Merged-chr13-85359368-4	chr13	85359262	85359462	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69876.0	NM_145452	218397.0	Mm.259653	NM_145452	ENSMUSG00000021549	Rasa1	Gap|RasGAP|Rasa	RAS p21 protein activator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-41313605-4	chr12	41313518	41313718	+	927.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053122, intron 4 of 6)	intron (NM_053122, intron 4 of 6)	172439.0	NM_001271708	16981.0	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-73926564-2	chr17	73926464	73926664	+	883.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_011723, exon 7 of 36)	exon (NM_011723, exon 7 of 36)	23632.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94598487-2	chr10	94598387	94598587	+	987.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12288.0	NR_106070	102466817.0		NR_106070	ENSMUSG00000098544	Mir7211	Gm27536|mmu-mir-7211	microRNA 7211	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75679941-4	chr11	75679836	75680036	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001277221, intron 1 of 1)	intron (NM_001277221, intron 1 of 1)	677.0	NM_001277221	12928.0	Mm.280125	NM_133656	ENSMUSG00000017776	Crk	Crk-I|Crk-II|Crk-III|Crk3|CrkIII|Crko|c-Crk|p38	v-crk avian sarcoma virus CT10 oncogene homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-51170735-2	chr13	51170635	51170835	+	606.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029173)	promoter-TSS (NM_029173)	-290.0	NM_029173	75124.0	Mm.179243	NM_029173	ENSMUSG00000021396	Nxnl2	4930519N16Rik|Rdcvf2	nucleoredoxin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-75793303-2	chr2	75793203	75793403	+	731.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38874.0	NM_172666	228061.0	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89861968-2	chr3	89861868	89862068	+	590.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	U6|snRNA|snRNA	30598.0	NM_172530	214547.0	Mm.225	NM_172530	ENSMUSG00000046280	She	9430022A14	src homology 2 domain-containing transforming protein E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-118864471-3	chr10	118864346	118864546	+	592.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001014390, intron 2 of 2)	intron (NM_001014390, intron 2 of 2)	4457.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	-1.32440223303897	-1.29339468673833	-0.717877708899544	-1.31276353204239	-1.32392690786997	-1.29109028300231	-1.30162128075409	-1.31119997543009	-2.49510383040271	0.470258445164311	1
Merged-chr13-34279144-4	chr13	34279086	34279286	+	836.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033167, intron 3 of 10)	intron (NM_001033167, intron 3 of 10)	65996.0	NM_001033167	73102.0	Mm.23932	NM_001033167	ENSMUSG00000038267	Slc22a23	3110004L20Rik	solute carrier family 22, member 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-93541823-2	chr10	93541723	93541923	+	582.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175488, intron 1 of 15)	(GA)n|Simple_repeat|Simple_repeat	1191.0	NM_175488	237465.0	Mm.477086	NM_175488	ENSMUSG00000036168	Ccdc38	4933417K05Rik	coiled-coil domain containing 38	protein-coding	-0.853663677946078	-0.978463413354341	-0.990106194490317	-0.992178239630038	-0.849920698321794	-0.487743081575316	-0.987554519810412	-0.991817244365349	1.89089006403382	0.516639116518846	1
Merged-chr3-104865071-4	chr3	104864978	104865178	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355044)	promoter-TSS (NM_001355044)	572.0	NM_001253702	229681.0	Mm.206379	NM_153091	ENSMUSG00000045576	St7l	St7r	suppression of tumorigenicity 7-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-83640084-1	chr10	83639984	83640184	+	834.0	f0_balb.idr	intron (NM_145220, intron 2 of 20)	intron (NM_145220, intron 2 of 20)	8580.0	NM_145220	216190.0	Mm.282985	NM_145220	ENSMUSG00000020263	Appl2	Dip3b	adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-86614315-4	chr11	86614243	86614443	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356531, intron 7 of 11)	intron (NM_001356531, intron 7 of 11)	-30185.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-78883702-2	chr7	78883602	78883802	+	685.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4575.0	NR_029826	723884.0		NR_029826	ENSMUSG00000065609	Mir7-2	Mir7a2|Mirn7-2|mir-7a-2|mir-7a2|mmu-mir-7-2|mmu-mir-7a2	microRNA 7-2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-66748602-2	chr15	66748501	66748701	+	547.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009375, intron 34 of 47)	intron (NM_009375, intron 34 of 47)	77831.0	NM_009375	21819.0	Mm.441333	NM_009375	ENSMUSG00000053469	Tg	Tgn|cog	thyroglobulin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-34875499-4	chr13	34875376	34875576	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013830)	promoter-TSS (NM_013830)	-18.0	NM_013830	19134.0	Mm.10027	NM_013830	ENSMUSG00000021413	Prpf4b	2610037H07|Prp4|Prp4k|Prpk|cbp143	pre-mRNA processing factor 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-88309309-2	chr1	88309209	88309409	+	700.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_134252, intron 2 of 26)	Lx5c|LINE|L1	2597.0	NM_134252	171382.0	Mm.218753	NM_134252	ENSMUSG00000036251	Trpm8	CMR1|LTRPC6|LTrpC-6|TRPP8|Trp-p8	transient receptor potential cation channel, subfamily M, member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-101914756-2	chr5	101914656	101914856	+	720.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 24 of 66)	MTD|LTR|ERVL-MaLR	149626.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34631590-2	chr17	34631490	34631690	+	958.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_030890, intron 2 of 3)	intron (NM_030890, intron 2 of 3)	1904.0	NM_030890	260297.0	Mm.390965	NM_030890	ENSMUSG00000015476	Prrt1	Bat-4|Bat4|D17H6S54E|DSPD1|G5b|NG5|ORF31|SynDIG4	proline-rich transmembrane protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101074694-4	chr7	101074511	101074711	+	976.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1K|LTR|ERVL-MaLR	-34164.0	NM_001146010	207278.0	Mm.263041	NM_199012	ENSMUSG00000030691	Fchsd2	BC034086|R74866|Sh3md3|mKIAA0769	FCH and double SH3 domains 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-80012831-4	chr15	80012724	80012924	+	894.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011057, intron 1 of 6)	CpG	1984.0	NM_011057	18591.0	Mm.144089	NM_011057	ENSMUSG00000000489	Pdgfb	PDGF-B|Sis	platelet derived growth factor, B polypeptide	protein-coding	0.547692509650738	0.797339956194915	0.770082816571286	1.0397978223523	0.860328025268205	1.13752480708025	0.572443488883287	1.61003115966273	1.47641443441322	0.33208705976466	0.833319968570075
Merged-chr1-9631182-4	chr1	9631090	9631290	+	967.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015470)	promoter-TSS (NR_015470)	-98.0	NR_015470	72481.0	Mm.279818	NR_015470	ENSMUSG00000079671	2610203C22Rik	2310007M24Rik	RIKEN cDNA 2610203C22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84658327-2	chr8	84658270	84658470	+	724.095215	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	4482.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95645455-4	chr3	95645359	95645559	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13262.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-78392333-4	chr10	78392233	78392433	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16212.0	NR_105872	102465547.0		NR_105872	ENSMUSG00000098376	Mir6907	Gm27351|mmu-mir-6907	microRNA 6907	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150509273-4	chr4	150509179	150509379	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 9 of 22)	intron (NM_001085492, intron 9 of 22)	142895.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	4.5929072028543	4.55404252242829	3.63182538139243	4.6605210480175	4.3536309386272	4.1382421542028	4.96552986317977	4.64138703054307	0.177418495256255	0.665288321029635	0.992380258859526
Merged-chr11-97575321-2	chr11	97575221	97575421	+	899.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018873)	promoter-TSS (NM_018873)	-195.0	NM_018873	56013.0	Mm.342665	NM_018873	ENSMUSG00000038453	Srcin1	P140|SNIP|mKIAA1684|p140Cap	SRC kinase signaling inhibitor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-87435300-2	chr16	87435200	87435400	+	780.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016924, intron 4 of 4)	intron (NM_016924, intron 4 of 4)	-2694.0	NM_001081068	78913.0	Mm.249005	NM_001081068	ENSMUSG00000052299	Ltn1	4930528H02Rik|AV266914|C87237|Listerin|Rnf160|Zfp294	listerin E3 ubiquitin protein ligase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31409621-2	chr14	31409521	31409721	+	764.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347585, intron 2 of 7)	intron (NM_001347585, intron 2 of 7)	8056.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-53713327-2	chr6	53713227	53713427	+	711.166626	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	107498.0	NM_025817	66873.0	Mm.422727	NM_025817	ENSMUSG00000043496	Tril	1200009O22Rik|AI316813|mKIAA0644	TLR4 interactor with leucine-rich repeats	protein-coding	0.367766200890653	2.39869730867567	0.433245513858519	0.409719172689872	0.892941273010113	2.76318605074305	0.439756410042491	0.413916947535582	0.653239442600261	0.841321956319263	0.998431161219273
Merged-chr9-20999052-2	chr9	20998952	20999152	+	591.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3685.0	NM_023167	66163.0	Mm.427576	NM_023167	ENSMUSG00000003299	Mrpl4	1110017G11Rik	mitochondrial ribosomal protein L4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135184664-4	chr5	135184563	135184763	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-2660.0	NM_011714	22385.0	Mm.40331	NM_011714	ENSMUSG00000002748	Baz1b	C87820|WSTF|Wbscr9	bromodomain adjacent to zinc finger domain, 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-79703655-4	chr11	79703536	79703736	+	841.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8333.0	NR_029579	387188.0		NR_029579	ENSMUSG00000065395	Mir193a	Mir193|Mirn193|mir-193a|mmu-mir-193|mmu-mir-193a	microRNA 193a	ncRNA	2.17481500879916	3.66748975801832	1.32758938350321	3.45052070030588	1.89434347871543	2.63339399535259	1.63292687277936	2.67818635405921	-1.2638421933074	0.167318023469606	0.633485087165721
Merged-chr11-68473651-2	chr11	68473551	68473751	+	818.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_177320, intron 1 of 18)	intron (NM_177320, intron 1 of 18)	-29368.0	NM_001004435	104709.0	Mm.234573	NM_001004435	ENSMUSG00000046207	Pik3r6	BB220380|p84|p84 PIKAP|p87(PIKAP)|p87PIKAP	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-123041681-4	chr8	123041578	123041778	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045268)	promoter-TSS (NR_045268)	606.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-64095412-4	chr15	64095293	64095493	+	980.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 26 of 28)	intron (NM_001276461, intron 26 of 28)	-34945.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	2.22642026807386	1.74639488860198	1.08697559199262	1.47998301702117	1.41975601634065	2.53947498023476	1.69967140635573	1.64660487324105	0.531458203199104	0.628774052210588	0.981055511574238
Merged-chr6-128438694-4	chr6	128438602	128438802	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028592)	promoter-TSS (NR_028592)	-46.0	NM_010219	14228.0	Mm.12758	NM_010219	ENSMUSG00000030357	Fkbp4	AL022792|AW208983|FKBP-4|FKBP-52|FKBP52|FKPB52|p59	FK506 binding protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-81789483-4	chr7	81789394	81789594	+	995.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026077)	promoter-TSS (NM_026077)	-41.0	NM_026077	67290.0	Mm.248391	NM_026077	ENSMUSG00000025102	3110040N11Rik	AI851475	RIKEN cDNA 3110040N11 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115196944-1	chr11	115196844	115197044	+	572.0	f1_c57bl6.idr	intron (NM_001033393, intron 2 of 9)	intron (NM_001033393, intron 2 of 9)	9457.0	NM_001033393	320534.0	Mm.260587	NM_001033393	ENSMUSG00000045980	Tmem104	C630005D06Rik|mFLJ00021	transmembrane protein 104	protein-coding	1.36719064970388	2.1528543353694	2.23299768693635	1.10471249242949	0.855384805939456	0.920099454984576	1.50739912562275	1.4561404008968	-1.91859050047906	0.128299892723758	0.560332465185109
Merged-chr8-108393067-4	chr8	108392963	108393163	+	807.508301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	191614.0	NR_077224	109215.0	Mm.65282	NR_077224	ENSMUSG00000110613	Lncbate1	3010033K07Rik|Lnc-BATE1	brown adipose tissue enriched long non-coding RNA 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-170208470-2	chr2	170208370	170208570	+	626.625	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65795.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152535133-2	chr1	152535033	152535233	+	744.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 12 of 17)	intron (NM_016846, intron 12 of 17)	90084.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-182020525-2	chr1	182020425	182020625	+	603.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010135)	promoter-TSS (NM_010135)	-545.0	NM_001083120	13800.0	Mm.87759	NM_008680	ENSMUSG00000022995	Enah	Mena|NDPP-1|Ndpp1|WBP8	ENAH actin regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-109106998-2	chr9	109106898	109107098	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172775, intron 16 of 37)	intron (NM_172775, intron 16 of 37)	11562.0	NM_172775	235611.0	Mm.53862	NM_172775	ENSMUSG00000053646	Plxnb1	2900002G15Rik|AU042020|mKIAA0407	plexin B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-143686312-4	chr7	143686214	143686414	+	984.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024290)	promoter-TSS (NM_024290)	-439.0	NR_131763	79201.0	Mm.290780	NM_024290	ENSMUSG00000037613	Tnfrsf23	SOB|TNFRSFH23|Tnfrh1|Tnfrsf1al1|mDcTRAILR1|mSOB	tumor necrosis factor receptor superfamily, member 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-49999836-4	chr16	49999742	49999942	+	854.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19382.0	NR_045001	628951.0	Mm.428032	NR_045001		Gm6936	-	predicted gene 6936	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191166449-4	chr1	191166357	191166557	+	970.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-1640.0	NM_001109759	619288.0	Mm.61148	NM_001109759	ENSMUSG00000091017	Fam71a	4933417M04Rik|GARI-L4	family with sequence similarity 71, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-29966234-6	chr14	29966220	29966420	+	917.5277710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F1|SINE|Alu	-2060.0	NM_019979	80795.0	Mm.104491	NM_019979	ENSMUSG00000042682	Selenok	1110001C03Rik|AA673253|HSPC030|Hsp30|Selk	selenoprotein K	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-87251861-2	chr17	87251761	87251961	+	588.366699	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14086.0	NM_176808	193813.0	Mm.30251	NM_139295	ENSMUSG00000024150	Mcfd2	1810021C21Rik|F5f8d|Lman1ip|Sdnsf	multiple coagulation factor deficiency 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83652215-4	chr6	83652113	83652313	+	945.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016751, intron 4 of 6)	intron (NM_016751, intron 4 of 6)	3903.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-79339262-3	chr2	79339165	79339365	+	862.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001048176, intron 10 of 12)	intron (NM_001048176, intron 10 of 12)	83839.0	NM_010576	16401.0	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-73257532-3	chr14	73257434	73257634	+	861.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009029, intron 17 of 26)	intron (NM_009029, intron 17 of 26)	19643.0	NM_175116	67168.0	Mm.390681	NM_175116	ENSMUSG00000033446	Lpar6	2610302I02Rik|P2ry5|P2y5	lysophosphatidic acid receptor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127935528-4	chr7	127935412	127935612	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001319147, exon 10 of 15)	exon (NM_001319147, exon 10 of 15)	-5399.0	NM_133351	76560.0	Mm.5875	NM_133351	ENSMUSG00000030800	Prss8	2410039E18Rik|AI313909|C79772|CAP1|fr|mCAP1	protease, serine 8 (prostasin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128441836-3	chr10	128441665	128441865	+	781.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_104288)	TTS (NR_104288)	-16915.0	NR_106183	102465894.0		NR_106183	ENSMUSG00000098957	Mir8105	Gm27346|mmu-mir-8105	microRNA 8105	ncRNA	0.844607972921828	0.93233851065874	0.905045329656599	2.30219499014424	1.4461101966782	2.31255148696365	1.18428617194932	2.59598512567119	1.48323073187813	0.250815380715424	0.748769407088865
Merged-chr4-148586812-3	chr4	148586707	148586907	+	993.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16C|LTR|ERVK	-4706.0	NM_009272	20810.0	Mm.10	NM_009272	ENSMUSG00000006442	Srm	AA407669|SpdST|SpdSy	spermidine synthase	protein-coding	2.39276732295239	3.01760700366348	1.5237839908108	1.75997120067937	3.49927070976809	3.78542744791375	4.0174426364252	4.36146888917974	2.73615262587671	6.12379150132486e-05	0.00207943161602535
Merged-chr7-59232120-3	chr7	59232048	59232248	+	734.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033962, intron 1 of 10)	intron (NM_001033962, intron 1 of 10)	3398.0	NM_173010	22215.0	Mm.9002	NM_011668	ENSMUSG00000025326	Ube3a	4732496B02|5830462N02Rik|A130086L21Rik|Hpve6a	ubiquitin protein ligase E3A	protein-coding	1.74675455632278	2.18749550796649	1.29641678480703	1.05320616534614	1.86080114115307	1.85797041836913	2.02654355987792	1.2724027547616	0.385943809646837	0.734361307863168	0.998431161219273
Merged-chr2-60172799-4	chr2	60172698	60172898	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37138.0	NM_020575	57438.0	Mm.260635	NM_020575	ENSMUSG00000026977	March7	Axo|Axot|Gtrgeo17	membrane-associated ring finger (C3HC4) 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-155187313-4	chr4	155187213	155187413	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011385, intron 1 of 6)	intron (NM_011385, intron 1 of 6)	35222.0	NM_011385	20481.0	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	2.62601073744904	2.69989046584723	3.64449545797121	3.14594174605408	3.45552090593012	1.66016620078714	3.08477468470466	2.89272118133451	-0.279057373277939	0.706631249763944	0.998431161219273
Merged-chr7-81921806-4	chr7	81921747	81921947	+	869.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013886, intron 1 of 5)	intron (NM_013886, intron 1 of 5)	12612.0	NM_013886	29877.0	Mm.392934	NM_013886	ENSMUSG00000025104	Hdgfl3	2700022B06Rik|HRP-3|Hdgfrp3	HDGF like 3	protein-coding	0.217258802143799	-0.0196679146150847	0.612183294560196	0.259263004143456	0.104535042127125	-0.0186014486562416	0.147320457849331	-0.0273859879275393	-2.14977441464733	0.296473845775885	1
Merged-chr9-14898220-2	chr9	14898120	14898320	+	837.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_176807, intron 4 of 4)	intron (NM_176807, intron 4 of 4)	5731.0	NM_176807	64931.0	Mm.86738	NM_022888	ENSMUSG00000031933	Izumo1r	0910001L11Rik|C86255|Folbp3|Folr4|Juno	IZUMO1 receptor, JUNO	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19085296-2	chr7	19085196	19085396	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_032418, intron 1 of 14)	intron (NM_032418, intron 1 of 14)	1447.0	NM_001190491	13400.0	Mm.6529	NM_032418	ENSMUSG00000030409	Dmpk	DM|DMK|Dm15|MDPK|MT-PK	dystrophia myotonica-protein kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-22864864-4	chr2	22864763	22864963	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019456, intron 10 of 13)	intron (NM_019456, intron 10 of 13)	-30659.0	NM_019501	56075.0	Mm.249752	NM_019501	ENSMUSG00000026784	Pdss1	2610203G20Rik|2700031G06Rik|TPT|TPT 1|Tprt|mDLP1|mSPS1	prenyl (solanesyl) diphosphate synthase, subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-54668041-3	chr6	54667850	54668050	+	850.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13C2|LTR|ERVK	-13674.0	NM_001289741	68235.0	Mm.233860	NM_026629	ENSMUSG00000038065	Mturn	2410066E13Rik|AI448550|B230212L03Rik	maturin, neural progenitor differentiation regulator homolog (Xenopus)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107676648-1	chr9	107676548	107676748	+	694.0	f1_c57bl6.idr	exon (NM_008140, exon 6 of 9)	exon (NM_008140, exon 6 of 9)	2944.0	NM_008140	14685.0	Mm.284853	NM_008140	ENSMUSG00000034837	Gnat1	Gnat-1|Ird1|Ird2|Tralpha|irdc|irdr|transducin	guanine nucleotide binding protein, alpha transducing 1	protein-coding	2.41708752667592	3.79686672843841	2.8500131505892	2.55255891901548	2.18374023613746	2.6099419781739	2.76663763748897	2.13922057092291	-1.10137346051358	0.145467893649242	0.595944839973915
Merged-chr18-46179425-4	chr18	46179323	46179523	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178872, intron 4 of 9)	intron (NM_178872, intron 4 of 9)	19395.0	NM_001170855	28105.0	Mm.277382	NM_178872	ENSMUSG00000033949	Trim36	D18Wsu100e|haprin	tripartite motif-containing 36	protein-coding	3.94540129195025	3.96668462763963	3.4921049201675	4.22221488681425	2.21723120960042	2.70937247115122	2.90561057915944	2.93178650248462	-1.94658138892733	0.000770148016573269	0.0157095141873753
Merged-chr19-3933613-2	chr19	3933513	3933713	+	986.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1573.0	NM_019449	54445.0	Mm.262094	NM_019449	ENSMUSG00000036908	Unc93b1	Unc-93B1|Unc93b	unc-93 homolog B1 (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-140058200-2	chr7	140058100	140058300	+	929.1666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-9112.0	NM_001347609	17703.0	Mm.4816	NM_010836	ENSMUSG00000025469	Msx3	AI323377	msh homeobox 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-104099179-4	chr8	104099069	104099269	+	872.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131138, intron 1 of 2)	B3|SINE|B2	-2456.0	NM_009868	12562.0	Mm.21767	NM_009868	ENSMUSG00000031871	Cdh5	7B4|AA408225|Cd144|VE-Cad|VECD|VEcad|Vec	cadherin 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-38368098-2	chr15	38367998	38368198	+	997.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-67387.0	NM_001289471	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139736413-4	chr5	139736314	139736514	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_174850)	promoter-TSS (NM_174850)	-81.0	NM_174850	231830.0	Mm.240510	NM_174850	ENSMUSG00000036718	Micall2	A930021H16Rik|JRAB|MICAL-L2|mFLJ00139	MICAL-like 2	protein-coding	6.72943263006713	6.77491951606325	7.28756879401061	7.06367281637151	7.02732151821976	6.94856193433031	6.59767328603378	7.35786780967233	0.031966380633114	0.873416283380619	0.998431161219273
Merged-chr3-106545052-2	chr3	106544952	106545152	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001293694, intron 1 of 8)	intron (NM_001293694, intron 1 of 8)	-1906.0	NM_001357819	99712.0	Mm.429443	NM_133869	ENSMUSG00000040774	Cept1	9930118K05Rik|mCEPT1	choline/ethanolaminephosphotransferase 1	protein-coding	-1.84446540621454	-1.66703209084435	-1.82297003008319	-1.83062437091832	-1.84230234211872	-1.6650127732569	-1.82086056797065	-1.82925424756847	0.037684011990387	0.991491645451152	1
Merged-chr1-86179021-4	chr1	86178925	86179125	+	971.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027456, intron 9 of 20)	intron (NM_027456, intron 9 of 20)	24245.0	NM_001310702	78795.0	Mm.379264	NM_027456	ENSMUSG00000062590	Armc9	3830422A13Rik|4831423D23Rik|4930438O05Rik|5730415N24Rik	armadillo repeat containing 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35998862-2	chr17	35998762	35998962	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_015618, intron 1 of 1)	IMPB_01|Satellite|Satellite	4358.0	NR_015618	77810.0	Mm.483143	NR_015618		A930015D03Rik	-	RIKEN cDNA A930015D03 gene	ncRNA	0.796326104349156	0.510007989585045	0.70946146526894	1.22443520447196	0.476822628862163	0.933245393423242	1.65263268976127	0.491233478745506	0.691884513360427	0.669509308070153	0.993577811443337
Merged-chr6-73248497-4	chr6	73248415	73248615	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019879)	promoter-TSS (NM_019879)	10.0	NM_019879	56451.0	Mm.29845	NM_019879	ENSMUSG00000052738	Suclg1	1500000I01Rik|Sucla1	succinate-CoA ligase, GDP-forming, alpha subunit	protein-coding	5.17494838299629	5.34487348438464	5.91595577907949	4.49015628954163	4.99101906191522	4.51429964665672	5.52213930264421	4.16762756571923	-0.499283898833203	0.203980398052816	0.69167790036705
Merged-chr8-25441475-2	chr8	25441375	25441575	+	545.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-77284.0	NM_001079909	14182.0	Mm.265716	NM_010206	ENSMUSG00000031565	Fgfr1	AW208770|Eask|FGFR-I|FLG|Fgfr-1|Flt-2|Hspy|MFR|bFGF-R-1|c-fgr	fibroblast growth factor receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101700579-2	chr11	101700479	101700679	+	597.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32377.0	NM_144831	217207.0	Mm.28186	NM_144831	ENSMUSG00000034931	Dhx8	Ddx8|mDEAH6|mKIAA4096	DEAH (Asp-Glu-Ala-His) box polypeptide 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-126690809-4	chr3	126690646	126690846	+	982.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025438, intron 3 of 18)	intron (NM_001025438, intron 3 of 18)	93795.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	3.14220928209742	3.00304675267491	4.16098549954774	2.12146225723969	3.35460024006836	1.52098654977621	2.68284556896967	1.93459441641139	-1.23570782975721	0.13643282924865	0.576515996240423
Merged-chr10-86473826-2	chr10	86473726	86473926	+	655.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013722, intron 1 of 13)	L1_Mm|LINE|L1	25070.0	NM_001164495	27204.0	Mm.394931	NM_013722	ENSMUSG00000059602	Syn3	-	synapsin III	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3849132-2	chr19	3849032	3849232	+	810.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2641.0	NM_001271496	12660.0	Mm.225505	NM_013490	ENSMUSG00000024843	Chka	CK|CK/EK-alpha|Chetk-alpha|Chk|ChoK|EK|EtnK-alpha	choline kinase alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-73715182-2	chr12	73715082	73715282	+	720.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008856, intron 9 of 13)	intron (NM_008856, intron 9 of 13)	130386.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-82953633-4	chr10	82953513	82953713	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR35B_MM|LTR|ERVL	-31884.0	NM_021439	58250.0	Mm.360747	NM_021439	ENSMUSG00000034612	Chst11	1110020P09Rik|C4ST|C4ST-1|C4ST1|C4s	carbohydrate sulfotransferase 11	protein-coding	4.72130164077819	4.59710328154766	5.45349493265529	5.47769547344152	3.66850171654263	4.84464929010056	5.31468181928108	5.74320462992566	-0.0465402579234201	0.912231953825109	0.998431161219273
Merged-chr9-118669936-4	chr9	118669830	118670030	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 9 of 27)	MER2|DNA|TcMar-Tigger	-41762.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	5.76034561228526	5.61276532831111	4.65804023629482	4.72111563223006	6.00401818795135	5.42894358939561	5.23757474404368	5.31624019559875	0.293767740998909	0.387676657183602	0.877281126535054
Merged-chr2-26360446-2	chr2	26360346	26360546	+	938.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001037747)	promoter-TSS (NM_001037747)	-899.0	NM_001037747	332579.0	Mm.330064	NM_001037747	ENSMUSG00000026928	Card9	Gm782	caspase recruitment domain family, member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-31297863-1	chr8	31297763	31297963	+	823.0	f1_balb.idr	Intergenic	Intergenic	-69886.0	NR_046272	74517.0	Mm.390001	NR_046272	ENSMUSG00000109915	7420700N18Rik	-	RIKEN cDNA 7420700N18 gene	ncRNA	2.61157338555231	1.87379723925306	2.10419268408028	1.09966850610629	2.63473071655994	1.16744358748855	2.86941311161659	1.10447273078667	0.364614246658286	0.755647770988036	0.998431161219273
Merged-chr12-54835196-4	chr12	54835083	54835283	+	902.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27694.0	NM_007688	12632.0	Mm.276826	NM_007688	ENSMUSG00000062929	Cfl2	-	cofilin 2, muscle	protein-coding	1.69787762428177	0.722936658505301	1.57452398576048	0.917420653781054	2.22222246478016	0.726879479715653	0.709094121432741	0.922328514014756	0.175557880261382	0.904845855780494	0.998431161219273
Merged-chr12-12231800-4	chr12	12231694	12231894	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30345.0	NM_029758	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	2.1202313261008	2.03815276193934	1.84183703982309	1.79687317406053	2.13676215757316	2.05224046959778	1.85451151637111	1.80479988724874	0.0385329310187791	0.966886717063302	0.998431161219273
Merged-chr8-85036838-4	chr8	85036758	85036958	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001122843)	promoter-TSS (NM_001122843)	-57.0	NM_145390	212999.0	Mm.220357	NM_145390	ENSMUSG00000031691	Tnpo2	1110034O24Rik|AA414969|AI464345|AI852433|IPO3|Knpb2b|Kpnb2b|TRN2	transportin 2 (importin 3, karyopherin beta 2b)	protein-coding	1.82768324313844	1.20113872433233	1.43583405626128	1.3964483153724	1.97158165216666	3.06506396687845	2.58400663067149	2.40829645522089	2.79478686906813	0.00551530270727903	0.071926741176015
Merged-chr9-122785421-4	chr9	122785311	122785511	+	967.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199736, intron 12 of 19)	intron (NM_001199736, intron 12 of 19)	-20136.0	NM_001013405	382117.0	Mm.215892	NM_001013405	ENSMUSG00000046603	Tcaim	D9Ertd402e|Gm1129|TOAG-1	T cell activation inhibitor, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-155108574-4	chr1	155108404	155108604	+	859.354126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8868.0	NM_010500	15939.0	Mm.12246	NM_010500	ENSMUSG00000056708	Ier5	-	immediate early response 5	protein-coding	-0.318527100689821	-0.303283697171178	0.576834472535787	-0.137270105293877	-0.317570752666027	-0.302164298382408	-0.307160900613691	0.0145781698663951	-2.01721471279004	0.40866237338594	1
Merged-chr16-93913013-2	chr16	93912913	93913113	+	607.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	16554.0	NM_001165925	56173.0	Mm.328716	NM_019500	ENSMUSG00000047109	Cldn14	AI851731	claudin 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139196140-2	chr5	139196040	139196240	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-4497.0	NM_001256115	77053.0	Mm.210845	NM_024451	ENSMUSG00000036817	Sun1	4632417G13Rik|5730434D03Rik|Unc84a|mKIAA0810	Sad1 and UNC84 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-67515629-4	chr3	67515522	67515722	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164763)	promoter-TSS (NM_001164763)	-99.0	NM_001164763	109222.0	Mm.38002	NM_001164763	ENSMUSG00000049404	Rarres1	5430417P09Rik|AI662122	retinoic acid receptor responder (tazarotene induced) 1	protein-coding	4.18835496236257	4.41862690439959	3.61394753968939	3.91707592276501	3.09975032197337	2.9958204366586	3.46811998851927	3.53064356740757	-1.13718077446446	0.0250163181532789	0.209404036188168
Merged-chr15-3994944-1	chr15	3994844	3995044	+	565.0	f0_balb.idr	intron (NM_145930, intron 1 of 5)	intron (NM_145930, intron 1 of 5)	808.0	NM_145930	106064.0	Mm.21299	NM_145930	ENSMUSG00000041935	AW549877	AI195826	expressed sequence AW549877	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-76988130-4	chr8	76988027	76988227	+	915.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083906, intron 2 of 8)	Charlie4a|DNA|hAT-Charlie	85619.0	NM_001083906	110784.0	Mm.324393	NM_001083906	ENSMUSG00000031618	Nr3c2	MR|Mlr	nuclear receptor subfamily 3, group C, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-29420769-1	chr6	29420669	29420869	+	549.0	f1_balb.idr	intron (NM_001347071, intron 17 of 17)	intron (NM_001347071, intron 17 of 17)	-12384.0	NM_001081185	68794.0	Mm.39046	NM_026839	ENSMUSG00000068699	Flnc	1110055E19Rik|ABP-280|ABPL|Fln2	filamin C, gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36051972-2	chr1	36051872	36052072	+	552.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16428.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53397482-4	chr4	53397384	53397584	+	939.7666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-42929.0	NM_001159633	100434.0	Mm.482207	NM_133891	ENSMUSG00000028412	Slc44a1	2210409B22Rik|4833416H08Rik|AW547365|CHTL1|CTL1|Cdw92	solute carrier family 44, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129608786-4	chr4	129608703	129608903	+	959.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_029748)	TTS (NM_029748)	5454.0	NM_001195730	100504491.0	Mm.482597	NM_001195730	ENSMUSG00000078552	Dcdc2b	Gm12964|Gm1366	doublecortin domain containing 2b	protein-coding	3.78410695792001	3.29785814996226	3.40033516460034	3.9803466392663	3.56069840556327	3.74228731557325	4.33673571345199	4.73113915811048	0.735523700203499	0.141866092507204	0.587744950932814
Merged-chr2-167904158-2	chr2	167904058	167904258	+	809.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-28169.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-99179347-4	chr10	99179246	99179446	+	883.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153333, intron 11 of 12)	intron (NR_153333, intron 11 of 12)	71211.0	NM_015737	14426.0	Mm.314	NM_015737	ENSMUSG00000090035	Galnt4	AV011803	polypeptide N-acetylgalactosaminyltransferase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-117298273-2	chr14	117298173	117298373	+	609.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011821, intron 2 of 8)	intron (NM_011821, intron 2 of 8)	372976.0	NM_011821	23888.0	Mm.440025	NM_011821	ENSMUSG00000058571	Gpc6	-	glypican 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100715211-2	chr11	100715111	100715311	+	662.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_029307)	TTS (NM_029307)	1361.0	NM_029307	75482.0	Mm.46175	NM_029307	ENSMUSG00000017832	Hspb9	1700007H20Rik	heat shock protein, alpha-crystallin-related, B9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-108825965-2	chr9	108825869	108826069	+	657.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359573)	promoter-TSS (NM_001359573)	-76.0	NM_001359573	107934.0	Mm.39945	NM_080437	ENSMUSG00000023473	Celsr3	Adgrc3|Fmi1|flamingo|mKIAA0812	cadherin, EGF LAG seven-pass G-type receptor 3	protein-coding	1.86148851432666	1.55888698361034	1.79841762295618	2.1415875560262	1.07699762866728	1.73325186434663	1.5224429205019	1.87139533197014	-0.859362720686656	0.432139887625219	0.904679012727573
Merged-chr13-45567074-2	chr13	45566974	45567174	+	811.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_009124, exon 7 of 8)	exon (NM_009124, exon 7 of 8)	59630.0	NM_025508	66355.0	Mm.290802	NM_025508	ENSMUSG00000000253	Gmpr	2310004P21Rik|AV028449|GMPR 1	guanosine monophosphate reductase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-81675005-2	chr4	81674905	81675105	+	722.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-187992.0	NR_030570	100124446.0		NR_030570	ENSMUSG00000077941	Mir466h	Mirn466h	microRNA 466h	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-172481323-4	chr1	172481208	172481408	+	692.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145800)	promoter-TSS (NM_001145800)	-905.0	NM_001145800	93842.0	Mm.214530	NM_033608	ENSMUSG00000037995	Igsf9	644ETD8|Dasm1|Kiaa1355-hp|NRT1|Ncaml|mKIAA1355	immunoglobulin superfamily, member 9	protein-coding	2.7660737067301	2.36978845336742	1.25798943532624	2.10681792970248	2.12196169659152	2.12597038582041	1.26483950056542	2.43094934516608	-0.442664837630949	0.668217707747004	0.993302559372498
Merged-chr16-33684456-4	chr16	33684344	33684544	+	999.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175256)	promoter-TSS (NM_175256)	-22.0	NM_175256	77446.0	Mm.245741	NM_172934	ENSMUSG00000075254	Heg1	4632417D23Rik|5530401I02Rik|9530025L16Rik|BC038614|Gm629	heart development protein with EGF-like domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-51888615-4	chr16	51888499	51888699	+	823.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	98688.0	NR_153657	629091.0	Mm.364775	NR_153657		Gm29686	-	predicted gene, 29686	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-115252405-4	chr10	115252243	115252443	+	732.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025706)	promoter-TSS (NM_025706)	-850.0	NM_025706	66687.0	Mm.22252	NM_025706	ENSMUSG00000020130	Tbc1d15	4432405K22Rik|AU022358|AU023730|AW557774|Ly6dl|Rab7-GAP	TBC1 domain family, member 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-143046486-4	chr7	143046375	143046575	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110355, intron 1 of 4)	intron (NR_110355, intron 1 of 4)	-6275.0	NM_133655	12520.0	Mm.806	NM_133655	ENSMUSG00000037706	Cd81	Tapa-1|Tapa1|Tspan28	CD81 antigen	protein-coding	4.9610054777213	4.73642172918273	4.92709760784265	4.84090434341719	5.07559957811148	4.49946330659934	3.77420335679271	3.73787664356696	-0.581878019523493	0.153880398066021	0.609057735648598
Merged-chr7-16242289-4	chr7	16242163	16242363	+	790.55835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146005)	promoter-TSS (NM_001146005)	68.0	NM_001146005	319430.0	Mm.239570	NM_176912	ENSMUSG00000074361	C5ar2	C5L2|E030029A11Rik|Gpr77	complement component 5a receptor 2	protein-coding	1.91736137677096	2.79172806627612	2.23045806010541	2.01831249141467	2.59389476541232	1.74836434958318	2.97563727370835	2.88536538075791	0.755868078606433	0.366236375788494	0.861138758174226
Merged-chr9-17523040-2	chr9	17522940	17523140	+	544.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur2|LINE|L1	-769227.0	NM_025844	66917.0	Mm.103534	NM_025844	ENSMUSG00000001774	Chordc1	1110001O09Rik|AA409036|Chp-1|morgana	cysteine and histidine-rich domain (CHORD)-containing, zinc-binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-24137487-4	chr16	24137393	24137593	+	982.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54803.0	NR_155457	108168278.0	Mm.417246	NR_155457		Gm46545	-	predicted gene, 46545	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-13443686-4	chr9	13443584	13443784	+	963.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12323.0	NR_028271	18689.0	Mm.41972	NM_008835	ENSMUSG00000031802	Phxr4	Sp5	per-hexamer repeat gene 4	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-114973403-4	chr4	114973321	114973521	+	950.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025647, intron 1 of 5)	intron (NM_025647, intron 1 of 5)	13807.0	NM_025647	66588.0	Mm.294159	NM_025647	ENSMUSG00000028719	Cmpk1	0610011D08Rik|CK|Cmpk|UMP-CMPk	cytidine monophosphate (UMP-CMP) kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-61348208-2	chr9	61348108	61348308	+	998.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24158.0	NM_001083928	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34347765-4	chr17	34347629	34347829	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3084.0	NM_010381	100504404.0	Mm.15680	NM_010381		H2-Ea-ps	AI323765|E-alpha-f|H-2Ea|H2-Ea|I-Ealpha|Ia-3|Ia3|MHC-H2-Ea	histocompatibility 2, class II antigen E alpha, pseudogene	protein-coding	6.55450650976943	6.88656069074133	6.20833491350742	6.2418708401028	7.03551253799401	6.87115590365577	6.54586615986979	6.33075602227605	0.24303535193221	0.279173309953816	0.782600907240097
Merged-chr5-139281932-2	chr5	139281832	139282032	+	724.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172723, intron 4 of 10)	intron (NM_172723, intron 4 of 10)	28435.0	NM_001163316	67604.0	Mm.270137	NM_026269	ENSMUSG00000025858	Get4	1110007L15Rik|AW412535|Cee	golgi to ER traffic protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126564365-2	chr8	126564265	126564465	+	592.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29071.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-85500680-4	chr8	85500592	85500792	+	956.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173866, intron 2 of 11)	intron (NM_173866, intron 2 of 11)	8075.0	NM_173866	108682.0	Mm.200423	NM_173866	ENSMUSG00000031700	Gpt2	4631422C05Rik|ALT2|AU014768|AU041193|C87201	glutamic pyruvate transaminase (alanine aminotransferase) 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-56277348-4	chr8	56277250	56277450	+	896.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17202.0	NM_008278	15446.0	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100414577-4	chr11	100414485	100414685	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_176830, exon 1 of 8)	exon (NM_176830, exon 1 of 8)	234.0	NM_176830	66180.0	Mm.4940	NM_176830	ENSMUSG00000006931	P3h4	1110036O03Rik|AI413214|Leprel4|Sc65	prolyl 3-hydroxylase family member 4 (non-enzymatic)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101113972-3	chr15	101113825	101114025	+	826.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-1830.0	NM_144790	208258.0	Mm.152952	NM_144790	ENSMUSG00000047034	Ankrd33	A930021G21Rik|Panky|Panky-a	ankyrin repeat domain 33	protein-coding	1.84444033656564	1.1493648428056	1.12390385440001	2.15991269407607	1.86047467118587	1.9644144637642	2.65443290935246	1.69421761959319	1.18339907296143	0.282053223911276	0.784607383364121
Merged-chr4-49632015-4	chr4	49631922	49632122	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163263)	promoter-TSS (NM_001163263)	-38.0	NM_001163263	109331.0	Mm.24765	NM_182999	ENSMUSG00000028309	Rnf20	4833430L21Rik|AW540162|C79397|mKIAA4116	ring finger protein 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-82342420-3	chr15	82342385	82342585	+	706.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177391, intron 1 of 1)	intron (NM_177391, intron 1 of 1)	1306.0	NM_177391	338368.0	Mm.444916	NM_177391	ENSMUSG00000049687	Fam109b	C920005C14Rik|IPIP27B|Ses2	family with sequence similarity 109, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-135670835-2	chr7	135670735	135670935	+	941.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001316678, exon 13 of 20)	exon (NM_001316678, exon 13 of 20)	-18521.0	NR_015548	67765.0	Mm.445272	NR_015548	ENSMUSG00000097471	5830432E09Rik	-	RIKEN cDNA 5830432E09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122978407-2	chr8	122978307	122978507	+	693.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 1 of 12)	URR1A|DNA|hAT-Charlie	63877.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-103505214-3	chr13	103505120	103505320	+	768.527771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MDa|LINE|L1	-170728.0	NM_175171	328329.0	Mm.202606	NM_175171	ENSMUSG00000034751	Mast4	4930420O11Rik|AI642422|mKIAA0303	microtubule associated serine/threonine kinase family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-91716420-4	chr6	91716323	91716523	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009320, intron 2 of 14)	intron (NM_009320, intron 2 of 14)	32356.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-81322179-2	chr7	81322079	81322279	+	655.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008803, intron 17 of 21)	intron (NM_008803, intron 17 of 21)	23055.0	NM_009092	20068.0	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-65038654-2	chr12	65038554	65038754	+	657.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_177806, intron 1 of 13)	intron (NM_177806, intron 1 of 13)	2320.0	NM_177806	328110.0	Mm.283339	NM_177806	ENSMUSG00000035597	Prpf39	Srcs1	pre-mRNA processing factor 39	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71252546-5	chr17	71252488	71252688	+	590.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001357336, exon 8 of 8)	3' UTR (NM_001357336, exon 8 of 8)	47934.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	1.54562903861263	1.60509496623913	0.96030565064145	2.04726177423057	2.22899949945984	0.985066404360954	0.964830100332781	1.87258529547212	0.144279732095099	0.911908054870973	0.998431161219273
Merged-chr14-25402666-3	chr14	25402542	25402742	+	850.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56543.0	NM_001310666	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-155470621-4	chr1	155470512	155470712	+	953.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-53168.0	NM_011273	19775.0	Mm.266215	NM_011273	ENSMUSG00000026469	Xpr1	Rmc-1|Rmc1|Sxv|Syg1|XR	xenotropic and polytropic retrovirus receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-11573872-4	chr11	11573775	11573975	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53963.0	NM_001305143	102631730.0	Mm.159430	NM_001305143	ENSMUSG00000062511	4930512M02Rik	-	RIKEN cDNA 4930512M02 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-150919479-3	chr2	150919369	150919569	+	634.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027014, intron 4 of 6)	L1Md_F2|LINE|L1	9875.0	NM_001163476	69270.0	Mm.271603	NM_027014	ENSMUSG00000027454	Gins1	2810418N01Rik|Gins4|PSF1|mKIAA0186	GINS complex subunit 1 (Psf1 homolog)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-127483340-2	chr2	127483240	127483440	+	614.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001111331)	promoter-TSS (NM_001111331)	-841.0	NM_001111331	56461.0	Mm.315292	NM_019789	ENSMUSG00000079056	Kcnip3	4933407H12Rik|AI413860|Csen|DREAM|KChIP3|R74849	Kv channel interacting protein 3, calsenilin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-170885465-4	chr1	170885350	170885550	+	979.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356485)	promoter-TSS (NM_001356485)	90.0	NR_151476	80915.0	Mm.34365	NM_023173	ENSMUSG00000026659	Dusp12	1190004O14Rik|AA027408|AW049275|ESTM36|LMW-DSP4|T-DSP4|VH1|mVH1	dual specificity phosphatase 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-35941739-2	chr18	35941639	35941839	+	911.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23091.0	NM_001289602	74002.0	Mm.196944	NM_028707	ENSMUSG00000024347	Psd2	6330404E20Rik|AW125584|EFA6C	pleckstrin and Sec7 domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-86188734-2	chr15	86188634	86188834	+	553.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2593.0	NM_145475	223753.0	Mm.222685	NM_145475	ENSMUSG00000035891	Cerk	AI848610|D330016D08Rik|mKIAA1646	ceramide kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16044031-4	chr7	16043943	16044143	+	945.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27802.0	NM_001347559	666528.0	Mm.290718	NM_001099277	ENSMUSG00000078796	Zfp541	EG666528|Znf541	zinc finger protein 541	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-46498093-2	chr17	46497993	46498193	+	616.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_207161, intron 1 of 3)	intron (NM_207161, intron 1 of 3)	1304.0	NM_207161	381101.0	Mm.35801	NM_207161	ENSMUSG00000040658	Dnph1	C76683|Rcl	2'-deoxynucleoside 5'-phosphate N-hydrolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-65092140-4	chr5	65092042	65092242	+	885.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15426.0	NM_001347355	71778.0	Mm.10281	NM_175174	ENSMUSG00000054920	Klhl5	1300013C10Rik	kelch-like 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-37127762-2	chr14	37127662	37127862	+	774.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359902, intron 5 of 8)	intron (NM_001359902, intron 5 of 8)	7377.0	NM_001199122	66092.0	Mm.182912	NM_078478	ENSMUSG00000041028	Ghitm	1010001P14Rik|C77840|MICS1|PTD010|Tmbim5	growth hormone inducible transmembrane protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-13872335-4	chr6	13872224	13872424	+	995.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001352887)	promoter-TSS (NM_001352887)	755.0	NR_045995	76311.0	Mm.367129	NR_045995	ENSMUSG00000097616	1110019D14Rik	-	RIKEN cDNA 1110019D14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-59854992-4	chr5	59854899	59855099	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	131003.0	NR_040683	71057.0	Mm.50817	NR_040682	ENSMUSG00000106013	4933402J10Rik	-	RIKEN cDNA 4933402J10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-19300481-4	chr2	19300377	19300577	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001271564, exon 17 of 19)	exon (NM_001271564, exon 17 of 19)	-43840.0	NR_126563	108871.0	Mm.107666	NR_126563		4930447M23Rik	-	RIKEN cDNA 4930447M23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64861504-4	chr5	64861400	64861600	+	908.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57977.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44721423-4	chr9	44721320	44721520	+	975.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153537, intron 4 of 21)	CpG	13778.0	NM_153537	102693.0	Mm.28639	NM_153537	ENSMUSG00000048537	Phldb1	AU041016|D330037A14Rik|Ll5a	pleckstrin homology like domain, family B, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-3665680-4	chr8	3665576	3665776	+	902.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026985)	promoter-TSS (NM_026985)	-86.0	NM_026985	69189.0	Mm.175176	NM_026985	ENSMUSG00000013974	Mcemp1	1810033B17Rik	mast cell expressed membrane protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-44464402-2	chr6	44464302	44464502	+	824.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	-595659.0	NM_001004357	66797.0	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-93271295-1	chr10	93271195	93271395	+	656.0	f0_balb.idr	intron (NM_001322265, intron 2 of 4)	intron (NM_001322265, intron 2 of 4)	39864.0	NM_001322268	13713.0	Mm.4454	NM_013508	ENSMUSG00000008398	Elk3	D430049E23Rik|Erp|Etrp|Net|Sap-2	ELK3, member of ETS oncogene family	protein-coding	0.942045998357397	0.659540936260591	0.646885264210768	1.26198240394694	1.69077851145151	0.662363574395713	0.863827581202622	1.57021917754896	1.55466246392222	0.307695564153702	0.808836493842255
Merged-chr8-35802458-1	chr8	35802358	35802558	+	580.0	f1_balb.idr	Intergenic	Intergenic	24101.0	NM_027998	71908.0	Mm.37817	NM_027998	ENSMUSG00000055976	Cldn23	2310014B08Rik	claudin 23	protein-coding	-1.21575676353841	-1.1882771616738	-1.1995328574972	-1.2087786211754	-1.21524488394202	-1.18583800543462	-1.19698481468061	-0.540595393272118	2.74438217975722	0.425994238664144	1
Merged-chr2-6791737-1	chr2	6791637	6791837	+	568.0	f0_balb.idr	intron (NM_001110232, intron 3 of 15)	intron (NM_001110232, intron 3 of 15)	-70075.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-93405737-4	chr15	93405557	93405757	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358749, intron 2 of 8)	intron (NM_001358749, intron 2 of 8)	7193.0	NM_001285863	223828.0	Mm.74208	NM_146062	ENSMUSG00000036167	Pphln1	CR|HSPC206|HSPC232	periphilin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-58775755-4	chr15	58775650	58775850	+	866.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47677.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-94722022-2	chr1	94721922	94722122	+	808.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-75420.0	NR_040473	74689.0	Mm.399187	NR_040473	ENSMUSG00000100518	4930440C22Rik	-	RIKEN cDNA 4930440C22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-21353019-2	chr16	21352919	21353119	+	548.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19663.0	NR_131983	76222.0	Mm.86031	NR_131983		Magef1	6430590I03Rik	melanoma antigen family F, 1	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-134962557-4	chr1	134962442	134962642	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001278115)	promoter-TSS (NM_001278115)	-23.0	NM_026024	67196.0	Mm.284587	NM_026024	ENSMUSG00000026429	Ube2t	2700084L22Rik|C80607	ubiquitin-conjugating enzyme E2T	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-119076731-5	chr9	119076747	119076947	+	965.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019676, intron 3 of 14)	intron (NM_019676, intron 3 of 14)	11414.0	NM_001293648	18799.0	Mm.23963	NM_019676	ENSMUSG00000010660	Plcd1	AW212592|C79986	phospholipase C, delta 1	protein-coding	1.59531045244222	0.619009707832281	0.824035494745828	0.595176978496523	1.80662536183917	0.621980209464428	0.830793429902329	1.12228758266958	0.732515606038405	0.638070078155026	0.982599433509505
Merged-chr7-27545839-3	chr7	27545729	27545929	+	868.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011116, intron 1 of 13)	RMER19B|LTR|ERVK	7389.0	NM_011116	18807.0	Mm.6483	NM_011116	ENSMUSG00000003363	Pld3	Sam-9	phospholipase D family, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-169736182-1	chr2	169736082	169736282	+	543.0	f1_c57bl6.idr	intron (NM_080455, intron 1 of 1)	intron (NM_080455, intron 1 of 1)	102536.0	NM_080455	228911.0	Mm.315789	NM_080455	ENSMUSG00000047907	Tshz2	2900073F20Rik|B830045G17|Mtsh2|Sdccag33l|Tsh2|Zfp218|mKIAA4248|teashirt2	teashirt zinc finger family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-63181211-4	chr1	63181111	63181311	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_018796)	TTS (NM_018796)	2188.0	NR_028558	100217464.0	Mm.484706	NR_028558	ENSMUSG00000064602	Snora41	MBI-83	small nucleolar RNA, H/ACA box 41	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-23386012-1	chr5	23385912	23386112	+	680.0	f1_c57bl6.idr	Intergenic	Intergenic	48341.0	NR_040469	269630.0	Mm.425231	NR_040469	ENSMUSG00000073147	5031425E22Rik	-	RIKEN cDNA 5031425E22 gene	ncRNA	2.87573487591772	3.37994858008481	2.94640672251377	3.24558354439447	2.02885508270929	1.55659942855758	2.96969879547473	2.29733239483578	-1.54033406727517	0.0443145230374229	0.302323150532411
Merged-chr13-96697944-4	chr13	96697828	96698028	+	788.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-26992.0	NM_008255	15357.0	Mm.316652	NM_008255	ENSMUSG00000021670	Hmgcr	HMG-CoAR|Red	3-hydroxy-3-methylglutaryl-Coenzyme A reductase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89430299-4	chr3	89430206	89430406	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001293763)	promoter-TSS (NM_001293763)	92.0	NM_001293763	68911.0	Mm.22521	NM_026869	ENSMUSG00000047824	Pygo2	1190004M21Rik	pygopus 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-95799038-3	chr13	95798883	95799083	+	838.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027711, intron 2 of 35)	intron (NM_027711, intron 2 of 35)	92939.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	3.56781582463715	3.97129089440469	3.14492249972498	2.73458666075736	2.48590306754105	3.27822455546116	2.70614840753651	2.86664162132947	-0.968261977866021	0.130787206424075	0.566336454410263
Merged-chr1-185207995-4	chr1	185207878	185208078	+	921.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163754, intron 1 of 34)	MTC|LTR|ERVL-MaLR	3810.0	NM_001163754	98732.0	Mm.275841	NM_172649	ENSMUSG00000039318	Rab3gap2	1110059F07Rik|2010002H18Rik|5830469C09|AI851069|AW743433|RAB3-GAP150|mKIAA0839	RAB3 GTPase activating protein subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124862591-4	chr5	124862520	124862720	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144819)	promoter-TSS (NM_144819)	-85.0	NM_001081750	269704.0	Mm.138617	NM_001081750	ENSMUSG00000079215	Zfp664	AW060232|D930038J03Rik|ZFOC1|Znf664	zinc finger protein 664	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106999611-4	chr11	106999509	106999709	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010655)	promoter-TSS (NM_010655)	-84.0	NM_010655	16647.0	Mm.12508	NM_010655	ENSMUSG00000018362	Kpna2	2410044B12Rik|IPOA1|PTAC58|Rch1	karyopherin (importin) alpha 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167653258-2	chr2	167653158	167653358	+	637.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145538, intron 2 of 5)	intron (NM_145538, intron 2 of 5)	8286.0	NM_145538	407243.0	Mm.4863	NM_145538	ENSMUSG00000090213	Tmem189	AI840826|Kua	transmembrane protein 189	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-113608609-2	chr13	113608509	113608709	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_130796, intron 1 of 1)	intron (NM_130796, intron 1 of 1)	9955.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-100624964-4	chr5	100624844	100625044	+	987.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49312.0	NM_027978	71883.0	Mm.260661	NM_027978	ENSMUSG00000029319	Coq2	2310002F18Rik|PHB:PPT	coenzyme Q2 4-hydroxybenzoate polyprenyltransferase	protein-coding	0.0340123648254514	-0.206520364461348	0.431810368537044	-0.213982425247977	0.0402774671097905	-0.205567425542279	-0.209809453186841	-0.0548457589224041	-1.34374587727098	0.554574533896726	1
Merged-chr10-117720057-4	chr10	117719965	117720165	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9307.0	NM_001288586	17246.0	Mm.22670	NM_010786	ENSMUSG00000020184	Mdm2	1700007J15Rik|AA415488|Mdm-2	transformed mouse 3T3 cell double minute 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-88283406-2	chr8	88283306	88283506	+	757.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001109756, intron 1 of 27)	intron (NM_001109756, intron 1 of 27)	414.0	NM_001109756	11513.0	Mm.288206	NM_007406	ENSMUSG00000031659	Adcy7	AA407758	adenylate cyclase 7	protein-coding	-1.3681463318974	-1.33624156493372	-1.34650167276047	-0.80669348975676	-1.36769697821496	-1.33401815676661	-1.34417900924365	-1.3534210303531	-2.3580830592467	0.49586638340111	1
Merged-chr19-47449080-4	chr19	47448960	47449160	+	795.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008018, intron 1 of 14)	MIR|SINE|MIR	15351.0	NM_001164717	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	0.946204957538221	0.896375433040703	0.567022039048903	0.378744308679123	1.11761705955026	0.39398947486154	0.572283646498816	0.379777387535264	-0.300218169929897	0.864151956616446	1
Merged-chr7-79715190-2	chr7	79715090	79715290	+	698.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1004.0	NM_001291222	16576.0	Mm.101633	NM_010626	ENSMUSG00000050382	Kif7	-	kinesin family member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-15048285-2	chr2	15048185	15048385	+	670.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001165943, intron 1 of 10)	B1_Mus2|SINE|Alu	1027.0	NM_001165942	74455.0	Mm.478923	NM_028950	ENSMUSG00000026707	Nsun6	4933403D21Rik|4933414E04Rik|NOPD1	NOL1/NOP2/Sun domain family member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-145018355-2	chr7	145018290	145018490	+	824.583374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-78465.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	0.954777713837907	2.70740766590006	2.53594675177746	0.746826174038742	1.16980759007286	0.803685524986289	0.775814124937752	1.5910392011753	-2.44207238822515	0.0656546403984701	0.383507485638191
Merged-chr12-80325001-7	chr12	80324910	80325110	+	973.142883	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-64629.0	NM_001346669	109711.0	Mm.253564	NM_134156	ENSMUSG00000015143	Actn1	3110023F10Rik|Actn1a	actinin, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-64916050-4	chr14	64915941	64916141	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177338, intron 1 of 9)	intron (NM_177338, intron 1 of 9)	33816.0	NM_177338	219150.0	Mm.344074	NM_177338	ENSMUSG00000021972	Hmbox1	AI451877|AI604847|F830020C16Rik	homeobox containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-118422568-2	chr14	118422468	118422668	+	879.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56690.0	NR_045624	73306.0	Mm.362328	NR_045624	ENSMUSG00000099911	1700044C05Rik	-	RIKEN cDNA 1700044C05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-137481371-2	chr7	137481271	137481471	+	592.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13A2|LTR|ERVK	43697.0	NR_033611	620016.0	Mm.388932	NR_033611	ENSMUSG00000100863	Gm12669	-	glutaredoxin 3 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-66833536-4	chr15	66833415	66833615	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009375, intron 43 of 47)	intron (NM_009375, intron 43 of 47)	-1686.0	NM_009192	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-60877458-4	chr13	60877357	60877557	+	999.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-13041.0	NM_178098	214639.0	Mm.19839	NM_178098	ENSMUSG00000050345	4930486L24Rik	AW545031	RIKEN cDNA 4930486L24 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-32978661-3	chr16	32978564	32978764	+	721.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081255, intron 8 of 20)	intron (NM_001081255, intron 8 of 20)	64564.0	NM_001310672	70144.0	Mm.491178	NM_001081255	ENSMUSG00000022801	Lrch3	2210409B11Rik|AW215594|Gm1742	leucine-rich repeats and calponin homology (CH) domain containing 3	protein-coding	0.134907671892564	-0.106287155569181	0.0589434848101465	-0.114413986178178	0.580167029014236	-0.105250154392866	-0.109867810706112	0.181597095792015	1.52126856809952	0.491018339047918	1
Merged-chr9-44267567-2	chr9	44267467	44267667	+	673.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163742, intron 1 of 9)	intron (NM_001163742, intron 1 of 9)	620.0	NM_001163743	270151.0	Mm.3957	NM_178420	ENSMUSG00000032109	Nlrx1	BC034204|NOD9	NLR family member X1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71203437-4	chr17	71203330	71203530	+	918.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022882, intron 1 of 19)	intron (NM_022882, intron 1 of 19)	-1224.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-33807630-2	chr17	33807530	33807730	+	697.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17D2|LTR|ERVK	-2893.0	NM_001357162	80880.0	Mm.196330	NM_030697	ENSMUSG00000042099	Kank3	0610013D04Rik|Ankrd47|D17Ertd288e|NG28	KN motif and ankyrin repeat domains 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-45107628-2	chr13	45107486	45107686	+	799.5	f0_balb.idr|f1_balb.idr	Intergenic	ID_B1|SINE|B4	-105490.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	1.94812411715405	1.3339653860155	1.29753084183545	2.31144678220754	3.06386747350423	2.70835665448022	2.61494393260383	2.32393304326667	2.07957896676551	0.0259814385545938	0.215279903161614
Merged-chr1-166379136-4	chr1	166379048	166379248	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030245)	promoter-TSS (NM_030245)	-19.0	NM_030245	27878.0	Mm.100665	NM_030245	ENSMUSG00000026563	Tada1	2900026B15Rik|D1Ertd251e|Staf42|Tada1l	transcriptional adaptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-58636904-3	chr3	58636773	58636973	+	831.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081262, exon 1 of 14)	exon (NM_001081262, exon 1 of 14)	334.0	NM_001081262	545527.0	Mm.357722	NM_001081262	ENSMUSG00000070471	Erich6	4932431H17Rik|Fam194a	glutamate rich 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-76406854-4	chr11	76406780	76406980	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291161)	promoter-TSS (NM_001291161)	-45.0	NM_001291161	56322.0	Mm.18803	NM_019818	ENSMUSG00000020843	Timm22	Tim22	translocase of inner mitochondrial membrane 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-21547211-4	chr5	21547126	21547326	+	957.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199632, intron 11 of 20)	intron (NM_001199632, intron 11 of 20)	3699.0	NM_028977	74511.0	Mm.439963	NM_028977	ENSMUSG00000039883	Lrrc17	37kDa|4833425M04Rik|6130400C22Rik|P37nb	leucine rich repeat containing 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-52179665-2	chr18	52179565	52179765	+	618.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	-56119.0	NR_029788	723830.0		NR_029788	ENSMUSG00000065494	Mir28a	Mir28|Mirn28|mmu-mir-28|mmu-mir-28a	microRNA 28a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80901014-4	chr10	80900939	80901139	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013895)	promoter-TSS (NM_013895)	-70.0	NM_013895	30055.0	Mm.142132	NM_013895	ENSMUSG00000020219	Timm13	D10Ertd378e|Tim9|Timm9	translocase of inner mitochondrial membrane 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4049800-2	chr19	4049700	4049900	+	629.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7579.0	NM_181796	14869.0	Mm.441542	NM_181796	ENSMUSG00000038155	Gstp2	GSTpiA|Gst-3|Gst3	glutathione S-transferase, pi 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-152346840-2	chr3	152346740	152346940	+	943.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355666, intron 1 of 21)	CpG	362.0	NM_001076676	170822.0	Mm.258320	NM_133247	ENSMUSG00000025437	Usp33	9830169D19Rik|AA409780|Vdu1	ubiquitin specific peptidase 33	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-35028077-6	chr7	35027948	35028148	+	861.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008820, intron 11 of 14)	intron (NM_008820, intron 11 of 14)	28518.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53101350-2	chr4	53101250	53101450	+	738.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 7 of 49)	intron (NM_013454, intron 7 of 49)	58545.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-42392877-2	chr6	42392777	42392977	+	644.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7361.0	NM_001001452	387514.0	Mm.377921	NM_001001452	ENSMUSG00000046652	Tas2r143	Gm1404|Tas2r43|mt2r36	taste receptor, type 2, member 143	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98058200-2	chr11	98058100	98058300	+	932.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-4738.0	NM_146028	217154.0	Mm.181008	NM_146028	ENSMUSG00000017400	Stac2	24b2|24b2/STAC2|AW240854	SH3 and cysteine rich domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-33119206-2	chr12	33119106	33119306	+	580.0	f0_balb.idr|f1_c57bl6.idr	non-coding (NR_015602, exon 5 of 6)	non-coding (NR_015602, exon 5 of 6)	-26331.0	NM_001024478	68764.0	Mm.60083	NM_001024478	ENSMUSG00000035860	Cdhr3	1110049B09Rik|BB172694|Cdh28	cadherin-related family member 3	protein-coding	2.4907223547849	3.12347327645974	3.10851089297261	2.9356667505622	2.61981896313091	1.93761899185163	3.49769066644236	2.8563192135761	-0.144426303958094	0.841484014600046	0.998431161219273
Merged-chr17-56765718-2	chr17	56765618	56765818	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_144858, exon 2 of 13)	exon (NM_144858, exon 2 of 13)	967.0	NM_144858	224907.0	Mm.293973	NM_144858	ENSMUSG00000007603	Dus3l	AI662135|AW557805	dihydrouridine synthase 3-like (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-67636602-4	chr11	67636476	67636676	+	751.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001277080, intron 3 of 12)	intron (NM_001277080, intron 3 of 12)	40021.0	NM_001277079	14457.0	Mm.40338	NM_008088	ENSMUSG00000033066	Gas7	AW124766|B230343A10Rik|Gas7-cb	growth arrest specific 7	protein-coding	1.87564267808584	2.22691149179201	0.886054086740887	0.870459418128512	2.11165325006957	0.91015769250727	1.49735525548139	1.09872102331988	-0.337442915398257	0.804403921490508	0.998431161219273
Merged-chr14-75841848-4	chr14	75841698	75841898	+	973.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	3166.0	NR_045294	100043189.0	Mm.426329	NR_045294		Gm4285	-	predicted gene 4285	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-138659106-4	chr5	138659000	138659200	+	834.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36241.0	NM_183025	243308.0	Mm.36612	NM_183025	ENSMUSG00000056014	A430033K04Rik	C86988	RIKEN cDNA A430033K04 gene	protein-coding	1.47260418542793	1.17525620909115	2.14043649722515	2.35153882835849	1.9832224882073	1.65230183620688	1.39984273753108	2.51495056062344	0.220851920273938	0.837482968358172	0.998431161219273
Merged-chr10-118098825-2	chr10	118098694	118098894	+	719.200012	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19A|LTR|ERVK	-42993.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-134454428-2	chr1	134454328	134454528	+	556.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16B|LTR|ERVL	-1103.0	NM_153128	240756.0	Mm.87398	NM_153128	ENSMUSG00000026455	Klhl12	C3ip1	kelch-like 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-48818518-4	chr11	48818417	48818617	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1126.0	NM_145377	211007.0	Mm.794	NM_145377	ENSMUSG00000040365	Trim41	AW552703|BC020156|R75223|RINCK	tripartite motif-containing 41	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-125306561-4	chr5	125306461	125306661	+	977.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205083, intron 1 of 10)	PB1D9|SINE|Alu	34533.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91880693-4	chr16	91880597	91880797	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010587, intron 28 of 38)	intron (NM_010587, intron 28 of 38)	50933.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135973242-4	chr4	135973156	135973356	+	815.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011942)	promoter-TSS (NM_011942)	-662.0	NM_011942	26394.0	Mm.34302	NM_011942	ENSMUSG00000028670	Lypla2	LysoII	lysophospholipase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-45318712-4	chr14	45318601	45318801	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015774)	promoter-TSS (NM_015774)	-129.0	NM_015774	50527.0	Mm.387108	NM_015774	ENSMUSG00000021831	Ero1l	ERO1-L|Ero1a	ERO1-like (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-87449055-3	chr17	87448959	87449159	+	874.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2124.0	NM_007589	12314.0	Mm.329243	NM_007589	ENSMUSG00000036438	Calm2	1500001E21Rik|AL024017|Cam2|CamC	calmodulin 2	protein-coding	2.97577833363493	4.2608325488103	2.42761960555088	3.86888537689136	3.18030446046581	3.57273176104885	2.44919203566368	4.04158948477307	-0.202014197395928	0.759066802261041	0.998431161219273
Merged-chr12-4107584-3	chr12	4107494	4107694	+	765.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_153082, exon 7 of 7)	3' UTR (NM_153082, exon 7 of 7)	25020.0	NM_153082	217378.0	Mm.271656	NM_153082	ENSMUSG00000020657	Dnajc27	AI639580|C330021A05Rik|Rabj|Rbj	DnaJ heat shock protein family (Hsp40) member C27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132567571-4	chr4	132567482	132567682	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081211, intron 1 of 1)	intron (NM_001081211, intron 1 of 1)	3515.0	NM_001081211	19204.0	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-58954614-3	chr9	58954533	58954733	+	948.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008684, intron 7 of 28)	LTR41|LTR|ERVL	81808.0	NM_001042752	18007.0	Mm.42249	NM_008684	ENSMUSG00000032340	Neo1	2610028H22Rik|AI327052|D930014N22Rik|Igdcc2	neogenin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-31168342-2	chr6	31168195	31168395	+	634.916626	f1_balb.idr|f1_c57bl6.idr	intron (NR_110470, intron 2 of 2)	intron (NR_110470, intron 2 of 2)	50179.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-31611449-2	chr5	31611349	31611549	+	581.625	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	-2502.0	NM_025796	66845.0	Mm.120763	NM_025796	ENSMUSG00000106918	Mrpl33	0610009M10Rik|L33mt|MRP-L33	mitochondrial ribosomal protein L33	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-64403676-3	chr13	64403531	64403731	+	565.166687	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	Intergenic	RLTR23|LTR|ERV1	-28922.0	NM_053180	105278.0	Mm.74982	NM_053180	ENSMUSG00000021483	Cdk20	4932702G04Rik|AU019450|AW558027|CDCH|Ccrk|PNQLARE|p42	cyclin-dependent kinase 20	protein-coding	1.05082696264425	0.488600021910307	1.07287404447037	1.22150607343227	0.619065266871013	0.490512136273091	0.48196869193503	0.797883963196111	-2.28755881694619	0.177523753999035	1
Merged-chr14-34311248-4	chr14	34311141	34311341	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029389)	promoter-TSS (NM_029389)	514.0	NM_008133	14661.0	Mm.10600	NM_008133	ENSMUSG00000021794	Glud1	AI118167|Gdh-X|Glud|Gludl	glutamate dehydrogenase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91981502-1	chr2	91981402	91981602	+	841.0	f1_balb.idr	TTS (NM_011957)	TTS (NM_011957)	-17939.0	NM_138306	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	-1.21575676353841	-1.1882771616738	-1.1995328574972	-1.2087786211754	-1.21524488394202	-1.18583800543462	-1.19698481468061	-0.540595393272118	2.74438217975722	0.425994238664144	1
Merged-chr9-111049606-1	chr9	111049506	111049706	+	547.0	f1_balb.idr	Intergenic	RLTR31_Mur|LTR|ERVK	7638.0	NM_001302377	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-127791002-4	chr3	127790919	127791119	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356430, intron 1 of 2)	intron (NM_001356430, intron 1 of 2)	362.0	NM_001356430	211550.0	Mm.31852	NM_145133	ENSMUSG00000046688	Tifa	T2bp	TRAF-interacting protein with forkhead-associated domain	protein-coding	6.77169961604936	7.3411769478269	7.22299918476618	7.00262931245464	7.59992530837692	7.98511061553147	7.03032786563495	7.48550279478894	0.488925383033413	0.013590146257655	0.135565997842739
Merged-chr16-5210565-3	chr16	5210465	5210665	+	904.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5309.0	NR_105783	102465188.0		NR_105783	ENSMUSG00000098675	Mir6364	Gm27327|mmu-mir-6364	microRNA 6364	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-82751416-4	chr18	82751324	82751524	+	967.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7615.0	NR_045389	76961.0	Mm.396392	NR_045389	ENSMUSG00000101773	2210420H20Rik	-	RIKEN cDNA 2210420H20 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-29107091-2	chr10	29106991	29107191	+	668.083374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-36905.0	NM_026138	67412.0	Mm.390264	NM_026138	ENSMUSG00000038916	Soga3	6330407J23Rik	SOGA family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-136124450-2	chr5	136124350	136124550	+	556.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027891, intron 11 of 14)	RMER21B|LTR|ERV1	7759.0	NM_011293	20022.0	Mm.4896	NM_011293	ENSMUSG00000039771	Polr2j	14.5kDa|Polr2i|Rpb11a|Rpo2-4	polymerase (RNA) II (DNA directed) polypeptide J	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-75406499-2	chr9	75406399	75406599	+	812.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_015806, intron 1 of 5)	intron (NM_015806, intron 1 of 5)	2860.0	NM_027418	50772.0	Mm.480076	NM_015806	ENSMUSG00000042688	Mapk6	2610021I23Rik|D130053K17Rik|Erk3|Mapk4|Mapk63|Prkm4|Prkm6	mitogen-activated protein kinase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-35094143-4	chr18	35094027	35094227	+	761.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24785.0	NM_009818	12385.0	Mm.18962	NM_009818	ENSMUSG00000037815	Ctnna1	2010010M04Rik|AA517462|AI988031|Catna1	catenin (cadherin associated protein), alpha 1	protein-coding	1.41765020462898	1.87977754655088	1.11630825116084	1.76419845705016	1.89582239771582	2.32974066515078	1.69192378688761	1.64160118253387	1.04508768217703	0.33110932187649	0.83197671091297
Merged-chr10-75781207-6	chr10	75781084	75781284	+	871.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_133994, exon 1 of 5)	5' UTR (NM_133994, exon 1 of 5)	230.0	NM_133994	103140.0	Mm.5731	NM_133994	ENSMUSG00000001665	Gstt3	AI118089	glutathione S-transferase, theta 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-89426879-2	chr15	89426779	89426979	+	584.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_004843, exon 9 of 27)	non-coding (NR_004843, exon 9 of 27)	-1017.0	NM_009948	12895.0	Mm.227738	NM_009948	ENSMUSG00000078937	Cpt1b	Cpt1|Cpt1-m|Cpti|Cpti-m|M-cpti	carnitine palmitoyltransferase 1b, muscle	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-62558389-4	chr17	62558297	62558497	+	970.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	322920.0	NM_207654	13640.0	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4633058-2	chr16	4632958	4633158	+	618.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030205, intron 16 of 27)	(TAAA)n|Simple_repeat|Simple_repeat	-6887.0	NM_139307	246154.0	Mm.482140	NM_139307	ENSMUSG00000039646	Vasn	2610528G05Rik|Atia|Slitl2	vasorin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-113693601-3	chr13	113693512	113693712	+	760.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29936.0	NM_019960	56534.0	Mm.41410	NM_019960	ENSMUSG00000051456	Hspb3	2310035K17Rik|AI844863|Hsbp3|spb3	heat shock protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-73658647-4	chr12	73658550	73658750	+	943.216675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008856, intron 2 of 13)	Charlie1a|DNA|hAT-Charlie	73854.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3687050-2	chr4	3686992	3687192	+	794.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 1 of 12)	B2_Mm2|SINE|B2	8971.0	NM_010747	17096.0	Mm.317331	NM_010747	ENSMUSG00000042228	Lyn	AA407514|Hck-2|p53Lyn|p56Lyn	LYN proto-oncogene, Src family tyrosine kinase	protein-coding	-0.338987595569869	-0.324930679909044	-0.329529821017737	-0.333082205180306	0.329787108795439	-0.323894753110985	-0.328514950014388	0.31968822681724	3.75587326726971	0.143453181143543	1
Merged-chr2-181091017-2	chr2	181090917	181091117	+	730.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001003824, intron 10 of 16)	intron (NM_001003824, intron 10 of 16)	44272.0	NM_001006668	16536.0	Mm.40615	NM_010611	ENSMUSG00000016346	Kcnq2	HNSPC|KQT2|Nmf134	potassium voltage-gated channel, subfamily Q, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191850334-3	chr1	191850242	191850442	+	919.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28869.0	NM_010892	18005.0	Mm.33773	NM_010892	ENSMUSG00000026622	Nek2	AA617254|C77054	NIMA (never in mitosis gene a)-related expressed kinase 2	protein-coding	3.31967894394863	2.71673799741707	3.60109082567897	3.76782612701424	3.96470283310583	1.79872273005199	3.702817100245	4.19237267316567	0.401300206155404	0.545250525243631	0.956332845226679
Merged-chr8-33797576-3	chr8	33797483	33797683	+	777.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286168, intron 5 of 7)	intron (NM_001286168, intron 5 of 7)	-49813.0	NM_001206849	72632.0	Mm.443483	NM_001206849	ENSMUSG00000094500	Smim18	2700090O03Rik|AI835723	small integral membrane protein 18	protein-coding	2.06831069533507	1.74449455523031	1.09628458209595	2.00050655678589	1.56805439485456	1.90725422056045	2.35902051104281	1.08147150484468	0.101793899290986	0.929494112836128	0.998431161219273
Merged-chr9-90271676-4	chr9	90271594	90271794	+	969.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_194334)	promoter-TSS (NM_194334)	-925.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	1.66699207257408	2.25027448225094	1.93843779950691	2.00400034732498	1.80578524118247	2.372435105335	1.95343347751234	1.19968463007403	-0.205496312768598	0.839476172724628	0.998431161219273
Merged-chr17-26601086-3	chr17	26600972	26601172	+	824.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026170, intron 1 of 9)	intron (NM_026170, intron 1 of 9)	39560.0	NM_026170	67458.0	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	0.919564900023648	0.633855335762329	0.621147281054791	1.35227621706269	0.77676411261177	1.59173272717214	0.623970241974592	1.55232678303606	1.20065486486018	0.435835952186334	0.907834077091723
Merged-chr10-81380122-2	chr10	81380027	81380227	+	670.599976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1757.0	NM_019757	56371.0	Mm.24202	NM_019757	ENSMUSG00000020235	Fzr1	AW108046|Cdh1|FZR|FZR2|Fyr|HCDH|HCDH1	fizzy and cell division cycle 20 related 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-115063086-4	chr4	115063031	115063231	+	761.083374	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001287388, exon 3 of 5)	exon (NM_001287388, exon 3 of 5)	5320.0	NM_001287388	21349.0	Mm.239869	NM_011527	ENSMUSG00000028717	Tal1	Hpt|SCL/tal-1|Scl|bHLHa17|tal-1	T cell acute lymphocytic leukemia 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-82954506-4	chr11	82954428	82954628	+	878.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183201, intron 1 of 5)	MER89|LTR|ERV1	2426.0	NM_183201	327978.0	Mm.42147	NM_183201	ENSMUSG00000054404	Slfn5	AI956840	schlafen 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-37506267-4	chr13	37506188	37506388	+	995.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	160943.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-39368842-3	chr1	39368750	39368950	+	815.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252219, intron 2 of 4)	intron (NM_001252219, intron 2 of 4)	999.0	NM_001252218	114641.0	Mm.379302	NM_053257	ENSMUSG00000073702	Rpl31	Dts	ribosomal protein L31	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-170147850-4	chr2	170147687	170147887	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5112.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	1.47460730632453	1.9702571555288	2.24591281107334	1.84663749891503	1.10772153080371	2.61345892725324	1.60167263693798	1.85638577203609	0.0404896031347238	0.969755728206294	0.998431161219273
Merged-chr6-86792985-2	chr6	86792887	86793087	+	889.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013471, intron 1 of 12)	intron (NM_013471, intron 1 of 12)	597.0	NM_013471	11746.0	Mm.259702	NM_013471	ENSMUSG00000029994	Anxa4	AI265406|AIV|AW106930|Anx4|Xanx-4	annexin A4	protein-coding	2.18905113358949	2.90650278394201	1.41780488610087	3.21612784576498	2.07945694041924	2.481047011383	2.39701450780816	2.65130411941476	-0.408529259373983	0.638944082391127	0.982599433509505
Merged-chr3-108844874-2	chr3	108844784	108844984	+	664.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-4382.0	NM_011504	20912.0	Mm.316894	NM_011504	ENSMUSG00000027882	Stxbp3	Munc-18c|Stxbp3a|Sxtbp3|Unc18-3	syntaxin binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-84268248-2	chr15	84268148	84268348	+	586.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133167, intron 1 of 12)	B4A|SINE|B4	36205.0	NM_133167	170736.0	Mm.323892	NM_133167	ENSMUSG00000022438	Parvb	AI595373|AW742462|D15Gsk1|affixin	parvin, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-93427242-2	chr6	93427142	93427342	+	588.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	485721.0	NR_104594	14924.0	Mm.217216	NM_010367	ENSMUSG00000045095	Magi1	AIP3|BAP1|Baiap1|Gukmi1|MAGI1c|Magi-1|TNRC19|WWP3|mKIAA4129	membrane associated guanylate kinase, WW and PDZ domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-61224008-2	chr19	61223911	61224111	+	643.25	f0_balb.idr|f0_c57.idr	TTS (NM_009970)	TTS (NM_009970)	4407.0	NM_009970	12982.0	Mm.287228	NM_009970	ENSMUSG00000059326	Csf2ra	CD116|Csfgmra|GM-CSF-Ra|GM-CSFR	colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)	protein-coding	-0.971312285390935	-1.32150654078059	-1.33147993744313	-1.33967238241123	-1.35121754901196	-1.3193452641188	-1.17229511841967	-1.33820593867886	-0.987986103315274	0.773449200295012	1
Merged-chr15-80289717-2	chr15	80289617	80289817	+	642.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001044308, intron 1 of 36)	intron (NM_001044308, intron 1 of 36)	2479.0	NM_001044308	239556.0	Mm.291058	NM_001044308	ENSMUSG00000022416	Cacna1i	Ca(V)3.3	calcium channel, voltage-dependent, alpha 1I subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-83854373-2	chr17	83854273	83854473	+	635.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_155490)	promoter-TSS (NR_155490)	45.0	NR_155490	320021.0	Mm.379475	NR_155490		C430042M11Rik	-	RIKEN cDNA C430042M11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43025602-4	chr4	43025510	43025710	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_020035, exon 1 of 10)	5' UTR (NM_020035, exon 1 of 10)	164.0	NM_020035	56703.0	Mm.143738	NM_020035	ENSMUSG00000028454	Pigo	PIG-O	phosphatidylinositol glycan anchor biosynthesis, class O	protein-coding	5.36815409322314	4.87291876424427	5.43639483771875	4.15508303437664	5.2660776439397	5.4803865659245	4.89004584650217	4.94950115700313	0.137190186268646	0.698498944270102	0.998284579433352
Merged-chr7-44284073-2	chr7	44283973	44284173	+	815.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10915.0	NM_001361137	102632142.0		NM_001361137		Gm18905	-	predicted gene, 18905	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-76689508-3	chr13	76689418	76689618	+	696.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030174, intron 3 of 20)	intron (NM_030174, intron 3 of 20)	304557.0	NM_030174	78771.0	Mm.316249	NM_030174	ENSMUSG00000021596	Mctp1	2810465F10Rik	multiple C2 domains, transmembrane 1	protein-coding	0.827060943751589	1.57092687378824	1.62570334891884	1.67231417098408	1.28319379677872	1.10248478268493	1.5251686534521	0.848089386495529	-0.963201186913549	0.470599203108557	0.925762173358338
Merged-chr6-6307789-1	chr6	6307689	6307889	+	659.0	f0_balb.idr	intron (NR_136905, intron 1 of 3)	intron (NR_136905, intron 1 of 3)	59130.0	NR_136905	101056138.0	Mm.389085	NR_136904	ENSMUSG00000093482	Gm20619	-	predicted gene 20619	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45082910-10	chr7	45082819	45083019	+	986.2333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_026555)	TTS (NM_026555)	9294.0	NM_026555	52377.0	Mm.29997	NM_026555	ENSMUSG00000019539	Rcn3	6030455P07Rik|D530026G20Rik|D7Ertd671e|RLP49	reticulocalbin 3, EF-hand calcium binding domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-139295837-4	chr7	139295737	139295937	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47355.0	NM_001098636	101631.0	Mm.334300	NM_001033206	ENSMUSG00000060260	Pwwp2b	AI594893|D7Ertd517e|D930023J19Rik|Pwwp2	PWWP domain containing 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97151307-2	chr6	97151207	97151407	+	612.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001081111)	TTS (NM_001081111)	-2424.0	NM_175313	101351.0	Mm.116802	NM_175313	ENSMUSG00000035245	Eogt	A130022J15Rik|AI447490|AW214473|AW259391|Aer61	EGF domain-specific O-linked N-acetylglucosamine (GlcNAc) transferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-23140254-4	chr19	23140156	23140356	+	858.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010638)	promoter-TSS (NM_010638)	-970.0	NM_010638	16601.0	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|Gm9971	Kruppel-like factor 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-74950539-1	chr9	74950439	74950639	+	540.0	f1_c57bl6.idr	Intergenic	Intergenic	-2341.0	NM_001359816	235493.0	Mm.208955	NM_153584	ENSMUSG00000034858	Fam214a	6330415I01Rik|AI553555|C130047D21Rik|Kiaa1370|mKIAA1370	family with sequence similarity 214, member A	protein-coding	2.11582162275321	3.26034775201098	1.05475449983764	2.5308446717301	0.982122572395946	1.85297025474764	1.06282047041887	2.14771605472799	-1.95463912859048	0.088144797989422	0.456764160499749
Merged-chr11-116609637-2	chr11	116609537	116609737	+	883.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001167680, intron 2 of 18)	intron (NM_001167680, intron 2 of 18)	14615.0	NM_001167680	217344.0	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67113112-4	chr10	67113018	67113218	+	740.141663	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus1|LINE|L1	-14140.0	NM_207221	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-55446776-3	chr12	55446657	55446857	+	700.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45890.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-60211328-2	chr2	60211228	60211428	+	938.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_020575, intron 1 of 9)	B1F1|SINE|Alu	1392.0	NM_020575	57438.0	Mm.260635	NM_020575	ENSMUSG00000026977	March7	Axo|Axot|Gtrgeo17	membrane-associated ring finger (C3HC4) 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28247819-4	chr17	28247723	28247923	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011145, intron 2 of 7)	intron (NM_011145, intron 2 of 7)	15069.0	NM_011145	19015.0	Mm.328914	NM_011145	ENSMUSG00000002250	Ppard	NUC-1|NUC1|Nr1c2|PPAR-beta|PPAR-delta|PPAR[b]|PPARdelta|Pparb|Pparb/d	peroxisome proliferator activator receptor delta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-37716395-3	chr2	37716309	37716509	+	655.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28125.0	NR_039590	100628597.0		NR_039590	ENSMUSG00000092958	Mir5128	mir-5128|mmu-mir-5128|mu-mir-5128	microRNA 5128	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44398646-1	chr9	44398546	44398746	+	558.0	f1_balb.idr	intron (NM_001357730, intron 2 of 9)	intron (NM_001357730, intron 2 of 9)	470.0	NM_008063	14385.0	Mm.30087	NM_008063	ENSMUSG00000032114	Slc37a4	100043178|G6PT|G6pt1|GSD-1b|mG6PT	solute carrier family 37 (glucose-6-phosphate transporter), member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46886366-4	chr8	46886261	46886461	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-100526.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-111674033-2	chr10	111673933	111674133	+	811.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C|LTR|ERVK	-79760.0	NR_045344	71321.0	Mm.410785	NR_045344	ENSMUSG00000097082	4933440J02Rik	-	RIKEN cDNA 4933440J02 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-81120870-4	chr3	81120724	81120924	+	781.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019971, intron 1 of 5)	intron (NM_019971, intron 1 of 5)	84408.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	1.76475352933028	2.27624336594332	2.06401763649337	2.35300396296287	1.62100973708505	3.03591324046274	1.53996994864174	2.14497551131793	0.269994259014465	0.774602211715101	0.998431161219273
Merged-chr7-120842808-4	chr7	120842706	120842906	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007908)	promoter-TSS (NM_007908)	-25.0	NM_007908	13631.0	Mm.25997	NM_007908	ENSMUSG00000035064	Eef2k	C86191|eEF-2K	eukaryotic elongation factor-2 kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-140985637-2	chr4	140985537	140985737	+	616.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-1236.0	NM_029097	74772.0	Mm.205625	NM_029097	ENSMUSG00000036622	Atp13a2	1110012E06Rik|AA589443	ATPase type 13A2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-9213569-3	chr18	9213497	9213697	+	917.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008058, exon 1 of 1)	exon (NM_008058, exon 1 of 1)	741.0	NM_008058	14370.0	Mm.184289	NM_008058	ENSMUSG00000036904	Fzd8	Fz8	frizzled class receptor 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-75855300-2	chr7	75855200	75855400	+	573.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029652, intron 1 of 2)	intron (NM_029652, intron 1 of 2)	6962.0	NM_029652	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	0.445258312237189	1.79220743380685	1.20208419153541	0.464435666410979	0.448157378906785	1.40755221213809	0.717015563551296	0.466412778271564	-1.07930052451389	0.522652174458635	0.947836760490745
Merged-chr4-32373356-4	chr4	32373219	32373419	+	990.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44116.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	1.5705477378536	2.19011936902103	1.07769515755815	2.55086028873519	1.4283466967562	2.51171071037381	1.34002656574313	1.50064715744966	-0.446354234746634	0.687729967721475	0.996533206832645
Merged-chr17-9774959-2	chr17	9774854	9775054	+	864.25	f0_balb.idr|f1_c57bl6.idr	non-coding (NR_045433, exon 2 of 4)	non-coding (NR_045433, exon 2 of 4)	912.0	NR_045433	71092.0	Mm.243827	NR_045433		4930452A19Rik	4933424P20Rik	RIKEN cDNA 4930452A19 gene	ncRNA	2.93407149390129	2.90349528592935	3.45548771224398	1.80430038157683	2.70656116794703	2.67449910733202	3.02888601453555	2.84329090002405	-0.159003800688156	0.827659880665332	0.998431161219273
Merged-chr15-96288664-3	chr15	96288589	96288789	+	705.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175251, intron 2 of 20)	intron (NM_175251, intron 2 of 20)	1167.0	NM_175251	77044.0	Mm.17166	NM_175251	ENSMUSG00000033237	Arid2	1700124K17Rik|4432409D24Rik|BAF200|zipzap/p200	AT rich interactive domain 2 (ARID, RFX-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-45769038-2	chr17	45768938	45769138	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_152153, intron 2 of 4)	C-rich|Low_complexity|Low_complexity	34532.0	NR_152153	433111.0	Mm.213441	NR_152153	ENSMUSG00000097727	F630040K05Rik	-	RIKEN cDNA F630040K05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129371148-4	chr2	129371035	129371235	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008361)	promoter-TSS (NM_008361)	4.0	NM_008361	16176.0	Mm.222830	NM_008361	ENSMUSG00000027398	Il1b	IL-1beta|Il-1b	interleukin 1 beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-84986737-4	chr15	84986649	84986849	+	995.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033273, intron 1 of 9)	intron (NM_001033273, intron 1 of 9)	1222.0	NM_001033273	223739.0	Mm.323925	NM_001033273	ENSMUSG00000036046	5031439G07Rik	AW554572|mKIAA0930	RIKEN cDNA 5031439G07 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-64200677-4	chr1	64200575	64200775	+	844.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-79286.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19256760-3	chr7	19256667	19256867	+	674.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001282021)	TTS (NM_001282021)	15087.0	NM_001282021	22323.0	Mm.9684	NM_009499	ENSMUSG00000030403	Vasp	-	vasodilator-stimulated phosphoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89316406-2	chr3	89316306	89316506	+	566.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010108, intron 2 of 4)	intron (NM_010108, intron 2 of 4)	6473.0	NM_010108	13638.0	Mm.331159	NM_010108	ENSMUSG00000028039	Efna3	AW494418|EFL-2|Ehk1-L|Epl3|LERK-3	ephrin A3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-61751838-2	chr11	61751738	61751938	+	960.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_144806, intron 5 of 11)	B3|SINE|B2	10250.0	NM_144806	212627.0	Mm.27703	NM_144806	ENSMUSG00000020528	Prpsap2	A230054F23Rik	phosphoribosyl pyrophosphate synthetase-associated protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-87816755-3	chr3	87816659	87816859	+	672.583313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011832)	TTS (NM_011832)	19808.0	NM_011832	23920.0	Mm.42041	NM_011832	ENSMUSG00000005640	Insrr	Irr	insulin receptor-related receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-160237038-4	chr2	160236938	160237138	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	90456.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-6937318-3	chr7	6937238	6937438	+	722.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360502, intron 5 of 7)	intron (NM_001360502, intron 5 of 7)	39324.0	NR_036631	116811.0	Mm.381671	NR_036631	ENSMUSG00000108043	Zim3	1700128I23Rik	zinc finger, imprinted 3	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-23726397-4	chr17	23726312	23726512	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023058)	promoter-TSS (NM_023058)	76.0	NM_023058	268930.0	Mm.182193	NM_023058	ENSMUSG00000023908	Pkmyt1	6230424P17|AW209059|Myt1	protein kinase, membrane associated tyrosine/threonine 1	protein-coding	2.86900436955589	1.92120190058732	3.94365237537638	2.30889883308891	2.43950371180281	1.36259061105854	3.43265739311285	1.26527184661088	-0.967343442272126	0.517853642764496	0.947641799425091
Merged-chr13-17781995-4	chr13	17781905	17782105	+	975.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027118, intron 1 of 13)	L1_Mus3|LINE|L1	23092.0	NM_001081058	69562.0	Mm.193924	NM_027118	ENSMUSG00000041297	Cdk13	2310015O17Rik|Cdc2l5	cyclin-dependent kinase 13	protein-coding	-1.06932346315282	-1.04545378193536	-0.220844647149311	-1.06494782147003	-1.06867040657128	-1.04264807175102	-1.05547001227371	-1.06448932552894	-3.08190232315036	0.346744811462451	1
Merged-chr1-139422263-4	chr1	139422170	139422370	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172643)	promoter-TSS (NM_172643)	-113.0	NM_172643	226470.0	Mm.119711	NM_172643	ENSMUSG00000033964	Zbtb41	8430415N23Rik|9430031N01|9830132G07Rik|AI316857	zinc finger and BTB domain containing 41	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-88720468-4	chr4	88720373	88720573	+	904.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172871, exon 1 of 1)	exon (NM_172871, exon 1 of 1)	2035.0	NM_172871	242521.0	Mm.260601	NM_172871	ENSMUSG00000070923	Klhl9	8030469P05|C530050O22Rik|mKIAA1354	kelch-like 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-102033477-4	chr5	102033393	102033593	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 2 of 66)	intron (NM_172882, intron 2 of 66)	36428.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	4.46605748360014	3.34943522534228	3.54978355914077	4.35226738047757	4.49901579510762	4.63808967611234	4.29605374152173	3.36574960588282	0.333943965365665	0.4960592128184	0.936688453792126
Merged-chr19-5515322-2	chr19	5515222	5515422	+	880.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-4805.0	NM_001024560	225861.0	Mm.20071	NM_001024560	ENSMUSG00000056185	Snx32	B930037P14Rik|Snx6b	sorting nexin 32	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98202870-5	chr11	98202862	98203062	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001109626)	promoter-TSS (NM_001109626)	-343.0	NM_001109628	69131.0	Mm.260516	NM_026952	ENSMUSG00000003119	Cdk12	1810022J16Rik|AI646528|Crk7|Crkrs|D11Ertd752e|Pksc	cyclin-dependent kinase 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-86487548-4	chr1	86487417	86487617	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-39040.0	NR_153834	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-96553640-3	chr4	96553541	96553741	+	903.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010008)	promoter-TSS (NM_010008)	10.0	NM_010008	13110.0	Mm.98200	NM_010008	ENSMUSG00000052914	Cyp2j6	-	cytochrome P450, family 2, subfamily j, polypeptide 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-135585648-2	chr1	135585548	135585748	+	873.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173437)	promoter-TSS (NM_173437)	-293.0	NM_173437	215690.0	Mm.34977	NM_173437	ENSMUSG00000009418	Nav1	9530089B19|9930003A20Rik|C230080M11Rik|Gm38399|Pomfil3|Unc53h1|mKIAA1151|steerin-1	neuron navigator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-38039252-4	chr5	38039146	38039346	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289535)	promoter-TSS (NM_001289535)	16.0	NM_026959	71116.0	Mm.18959	NM_026959	ENSMUSG00000029125	Stx18	1810035L21Rik|4933425D03Rik|AU041562	syntaxin 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-92326008-2	chr13	92325908	92326108	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001311120, intron 8 of 23)	intron (NM_001311120, intron 8 of 23)	-28775.0	NM_010049	13361.0	Mm.23695	NM_010049	ENSMUSG00000021707	Dhfr	8430436I03Rik|AA607882|AI662710|AW555094	dihydrofolate reductase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-105866899-4	chr1	105866806	105867006	+	987.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	86183.0	NM_009399	21934.0	Mm.6251	NM_009399	ENSMUSG00000026321	Tnfrsf11a	Ly109|ODFR|OFE|Rank|TRANCE-R|mRANK	tumor necrosis factor receptor superfamily, member 11a, NFKB activator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-36136751-4	chr2	36136663	36136863	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026434)	promoter-TSS (NM_026434)	-59.0	NR_027515	67889.0	Mm.205937	NM_026434	ENSMUSG00000026889	Rbm18	2010004P11Rik|AU015530	RNA binding motif protein 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-108990647-4	chr12	108990582	108990782	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177602, intron 3 of 6)	intron (NM_177602, intron 3 of 6)	77535.0	NM_001163175	380785.0	Mm.342085	NM_001163175	ENSMUSG00000040867	Begain	BM948371|Gm897	brain-enriched guanylate kinase-associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-95149526-3	chr8	95149410	95149610	+	939.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6970.0	NM_001145831	16582.0	Mm.378951	NM_010631	ENSMUSG00000031788	Kifc3	AI325457|BB123200	kinesin family member C3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-73000030-4	chr15	72999935	73000135	+	794.93335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_180662, exon 8 of 22)	exon (NM_180662, exon 8 of 22)	55777.0	NM_029640	76510.0	Mm.158902	NM_029640	ENSMUSG00000047921	Trappc9	1810044A24Rik|2900005P22Rik|4632408O18Rik|Ibp|Nibp|TRS130|mKIAA1882	trafficking protein particle complex 9	protein-coding	2.65020696662078	2.37291585271993	2.29140246009009	1.32355530609467	2.67240528645721	1.39584007971743	2.64199969646272	2.73149275558342	0.464563073383013	0.630185863051641	0.981387068864916
Merged-chr17-46546356-4	chr17	46546255	46546455	+	902.408325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081335)	promoter-TSS (NM_001081335)	33.0	NM_001081335	78309.0	Mm.329076	NM_001081335	ENSMUSG00000040327	Cul9	1810035I07Rik|Cul-9|Parc|mKIAA0708	cullin 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-77288296-3	chr2	77288200	77288400	+	862.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7708.0	NM_175465	228071.0	Mm.27120	NM_175465	ENSMUSG00000042272	Sestd1	1500031J16Rik|A930010O20|Solo/Trio8	SEC14 and spectrin domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191852082-2	chr1	191851982	191852182	+	633.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30609.0	NM_010892	18005.0	Mm.33773	NM_010892	ENSMUSG00000026622	Nek2	AA617254|C77054	NIMA (never in mitosis gene a)-related expressed kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-66896377-4	chr6	66896288	66896488	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177557)	promoter-TSS (NM_001177557)	-9.0	NM_001177559	14701.0	Mm.234342	NM_025278	ENSMUSG00000036402	Gng12	2010305F15Rik|AA536815|AI115529|AI314170|AI842738	guanine nucleotide binding protein (G protein), gamma 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-35155158-2	chr16	35155058	35155258	+	736.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001012765)	promoter-TSS (NM_001012765)	-478.0	NM_001012765	224129.0	Mm.41137	NM_001012765	ENSMUSG00000022840	Adcy5	AW121902|Ac5	adenylate cyclase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-121330535-1	chr5	121330435	121330635	+	649.0	f0_c57.idr	intron (NM_181421, intron 49 of 75)	IAPLTR2a|LTR|ERVK	54874.0	NM_001359947	231712.0	Mm.20488	NM_172275	ENSMUSG00000042726	Trafd1	1110008K06Rik|Fln29	TRAF type zinc finger domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-91223174-4	chr13	91223068	91223268	+	976.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025770, intron 1 of 7)	intron (NM_025770, intron 1 of 7)	819.0	NM_025770	66795.0	Mm.235385	NM_025770	ENSMUSG00000021619	Atg10	5330424L23Rik|5430428K15Rik|AI852123|APG10|Agp10|Apg10l|Apg10p|Atg10l	autophagy related 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-90198825-6	chr9	90198822	90199022	+	909.388916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003911, intron 23 of 23)	intron (NM_001003911, intron 23 of 23)	35944.0	NM_001311115	108153.0	Mm.102141	NM_001003911	ENSMUSG00000032363	Adamts7	ADAM-TS7|ADAMTS7B	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-98728146-3	chr15	98728000	98728200	+	990.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357893)	promoter-TSS (NM_001357893)	98.0	NM_024169	66120.0	Mm.30729	NM_024169	ENSMUSG00000003355	Fkbp11	1110002O23Rik|FKBP-11	FK506 binding protein 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-148485222-2	chr5	148485122	148485322	+	826.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	66451.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-35496146-3	chr8	35496090	35496290	+	795.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026067)	promoter-TSS (NM_026067)	-657.0	NM_026067	67276.0	Mm.207534	NM_026067	ENSMUSG00000031527	Eri1	3'hexo|3110010F15Rik|Thex1|eri-1	exoribonuclease 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-22353012-3	chr17	22352896	22353096	+	757.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355280, intron 4 of 6)	intron (NM_001355280, intron 4 of 6)	8404.0	NM_176962	319615.0	Mm.442162	NM_176962	ENSMUSG00000033972	Zfp944	6330416L07Rik	zinc finger protein 944	protein-coding	3.1631477504955	2.60743674380177	2.96542170145959	2.30181144359246	2.83919169540139	2.30359406090354	3.67594292521841	1.74728397407786	0.091529475609591	0.907901338584857	0.998431161219273
Merged-chr5-31453891-2	chr5	31453791	31453991	+	579.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360000, intron 2 of 12)	B1F2|SINE|Alu	1455.0	NM_001360000	269639.0	Mm.259127	NM_172993	ENSMUSG00000062761	Zfp512	2500002M11Rik|AI450173|D230008H22|Znf512	zinc finger protein 512	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-7265647-2	chr19	7265547	7265747	+	835.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1747.0	NM_054048	104383.0	Mm.283859	NM_054048	ENSMUSG00000024968	Rcor2	1A13|AW122124|CoREST|Rcor|Rcor1	REST corepressor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-90032276-5	chr7	90032169	90032369	+	690.133362	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110365, intron 1 of 5)	MTE-int|LTR|ERVL-MaLR	3110.0	NR_110364	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4794699-2	chr19	4794599	4794799	+	604.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290122)	promoter-TSS (NM_001290122)	-690.0	NM_001290123	19653.0	Mm.426069	NM_009032	ENSMUSG00000094936	Rbm4	4921506I22Rik|Lark1|Mlark|Rbm4a|lark	RNA binding motif protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-24244476-2	chr14	24244376	24244576	+	564.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163513, intron 1 of 31)	intron (NM_001163513, intron 1 of 31)	1444.0	NM_001163513	71228.0	Mm.68971	NM_027726	ENSMUSG00000021782	Dlg5	4933429D20Rik|T25557|mKIAA0583	discs large MAGUK scaffold protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-110843539-2	chr7	110843439	110843639	+	812.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_025999, intron 1 of 5)	intron (NM_025999, intron 1 of 5)	842.0	NM_025999	67150.0	Mm.96867	NM_025999	ENSMUSG00000030788	Rnf141	2610110L04Rik|AA792898|AU022812|ZFP36|ZNF230	ring finger protein 141	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-19630703-4	chr2	19630612	19630812	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27185.0	NR_033642	100041244.0	Mm.407223	NR_033642		Gm3230	-	predicted gene 3230	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-60351443-4	chr10	60351330	60351530	+	916.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028732, intron 1 of 6)	intron (NM_028732, intron 1 of 6)	4579.0	NM_028732	74048.0	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-100846395-4	chr5	100846302	100846502	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172715, intron 1 of 12)	CpG	173.0	NM_172715	231510.0	Mm.271911	NM_172715	ENSMUSG00000029314	Gpat3	1-AGPAT|1-AGPAT 9|4933407I02Rik|4933408F15|A230097K15Rik|Agpat9|GPAT-3|mGPAT3	glycerol-3-phosphate acyltransferase 3	protein-coding	3.6159459426265	4.52750749532565	4.91099337757907	2.88411364487976	4.45239908121592	5.52312402874232	4.1116793678181	4.48536294559306	0.706164388477961	0.168525013610573	0.634772848461591
Merged-chr13-12258192-4	chr13	12258094	12258294	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081128)	promoter-TSS (NM_001081128)	-81.0	NM_001081128	238505.0	Mm.40335	NM_001081128	ENSMUSG00000021311	Mtr	AI894170|D830038K18Rik|MS	5-methyltetrahydrofolate-homocysteine methyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139268512-2	chr5	139268412	139268612	+	623.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359238, intron 8 of 8)	intron (NM_001359238, intron 8 of 8)	15015.0	NM_001163316	67604.0	Mm.270137	NM_026269	ENSMUSG00000025858	Get4	1110007L15Rik|AW412535|Cee	golgi to ER traffic protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70076195-2	chr14	70076105	70076305	+	591.5	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-1240.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-56566280-3	chr18	56566294	56566494	+	712.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162989, intron 1 of 4)	intron (NM_001162989, intron 1 of 4)	3825.0	NM_001162989	56698.0	Mm.214569	NM_019996	ENSMUSG00000008301	Phax	2810055C14Rik|4933427L19Rik|AU018701|AU018854|D18Ertd65e|Rnuxa|p55	phosphorylated adaptor for RNA export	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-105346702-1	chr5	105346602	105346802	+	981.0	f1_balb.idr	promoter-TSS (NM_001039647)	promoter-TSS (NM_001039647)	-226.0	NR_132129	634650.0	Mm.458435	NM_001039647	ENSMUSG00000092021	Gbp11	EG634650|Gm7141	guanylate binding protein 11	protein-coding	0.487764680969806	1.00338362782761	0.350564776960829	0.667754545214811	0.626571768148109	0.360345849482662	1.16618456898163	0.345451639540608	0.144003623397511	0.934289571232359	1
Merged-chr6-35287623-2	chr6	35287523	35287723	+	599.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172892, intron 4 of 15)	intron (NM_172892, intron 4 of 15)	20503.0	NM_172892	243755.0	Mm.23666	NM_172892	ENSMUSG00000029843	Slc13a4	9630060C05Rik|SUT-1|SUT1	solute carrier family 13 (sodium/sulfate symporters), member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-13278286-3	chr2	13278190	13278390	+	736.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081084, intron 66 of 66)	intron (NM_001081084, intron 66 of 66)	-6875.0	NM_009105	20163.0	Mm.905	NM_009105	ENSMUSG00000026727	Rsu1	RsuI|rsp-1	Ras suppressor protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-158176553-4	chr2	158176469	158176669	+	976.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-15439.0	NR_036606	73399.0	Mm.416861	NR_036606	ENSMUSG00000078957	1700060C20Rik	-	RIKEN cDNA 1700060C20 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-80555907-2	chr17	80555807	80556007	+	600.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360144, intron 3 of 9)	B3|SINE|B2	7927.0	NM_001033443	381113.0	Mm.329216	NM_001033443	ENSMUSG00000033966	Cdkl4	AU067824|Gm942	cyclin-dependent kinase-like 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-112971157-2	chr12	112971057	112971257	+	571.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028193, intron 7 of 17)	intron (NM_028193, intron 7 of 17)	-5325.0	NM_001145900	399566.0	Mm.440140	NM_201646	ENSMUSG00000002803	Btbd6	-	BTB (POZ) domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-24989399-4	chr6	24989282	24989482	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33257.0	NM_177013	319832.0	Mm.127446	NM_177013	ENSMUSG00000048022	Tmem229a	6332401O19Rik	transmembrane protein 229A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-181822438-2	chr2	181822338	181822538	+	755.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001171615, intron 20 of 22)	intron (NM_001171615, intron 20 of 22)	-15416.0	NM_153594	245867.0	Mm.491085	NM_153594	ENSMUSG00000027589	Pcmtd2	5330414D10Rik|AI314201	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64293865-2	chr5	64293765	64293965	+	951.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 11 of 18)	MT2B2|LTR|ERVL	63508.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-121409807-3	chr10	121409705	121409905	+	929.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_138956)	TTS (NM_138956)	44715.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152592630-3	chr1	152592532	152592732	+	715.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346119, intron 2 of 17)	LTR48|LTR|ERV1	32585.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-15988162-1	chr19	15988062	15988262	+	612.0	f1_c57bl6.idr	intron (NR_045355, intron 2 of 2)	RMER19B|LTR|ERVK	3087.0	NR_045355	100502653.0	Mm.149980	NR_045355	ENSMUSG00000097557	C130060C02Rik	-	RIKEN cDNA C130060C02 gene	ncRNA	0.714908334370766	1.09193421006074	0.335240547403646	0.329268556646259	0.826981075684886	0.866427087020223	0.336943029904237	0.330313743807576	-0.252068965440565	0.892395637186465	1
Merged-chr18-67270164-4	chr18	67270059	67270259	+	847.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19064.0	NM_053261	114663.0	Mm.34079	NM_053261	ENSMUSG00000024525	Impa2	2210415D20Rik|AI326924|AW259601	inositol (myo)-1(or 4)-monophosphatase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-16240178-4	chr14	16240065	16240265	+	853.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001359883, exon 3 of 3)	3' UTR (NM_001359883, exon 3 of 3)	3166.0	NM_001359883	71147.0	Mm.197960	NM_027695	ENSMUSG00000021786	Oxsm	4933425A18Rik|C80494	3-oxoacyl-ACP synthase, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-47418267-4	chr14	47418141	47418341	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_144553, exon 1 of 19)	5' UTR (NM_144553, exon 1 of 19)	166.0	NM_144553	218977.0	Mm.240543	NM_144553	ENSMUSG00000037544	Dlgap5	C77459|C86398|Dap-5|Dlg7|Hurp|mKIAA0008	DLG associated protein 5	protein-coding	5.10116287941929	5.50892174162234	5.35131726285232	3.93644415738849	5.21642042307902	4.23641526062345	5.95920107670637	5.05445395365852	0.191997980889127	0.641622815045282	0.982599433509505
Merged-chr15-3218050-2	chr15	3217950	3218150	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52717.0	NM_001042613	20363.0	Mm.392203	NM_009155	ENSMUSG00000064373	Selenop	AU018766|D15Ucla1|Se-P|Sepp1|selp	selenoprotein P	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-136696251-2	chr1	136696151	136696351	+	859.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_037986)	promoter-TSS (NR_037986)	40.0	NR_037986	100503474.0	Mm.428276	NR_037986		Platr22	Gm16880	pluripotency associated transcript 22	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-73552351-2	chr10	73552251	73552451	+	664.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-269516.0	NM_001142760	11994.0	Mm.338933	NM_023115	ENSMUSG00000052613	Pcdh15	BB078305|Gm9815|Ush1f|av|nmf19|roda	protocadherin 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-8588262-1	chr1	8588162	8588362	+	589.0	f1_c57bl6.idr	intron (NM_001290392, intron 10 of 17)	L1_Mus3|LINE|L1	711615.0	NM_001290393	71096.0	Mm.336395	NM_027671	ENSMUSG00000025909	Sntg1	4933426D16Rik|G1SYN|SYN4	syntrophin, gamma 1	protein-coding	-1.50561175621786	-1.47331375025452	-1.02203377115094	-1.49110398925286	-1.50334449591826	-1.47119716082604	-1.48086985756939	-1.48966786617048	-2.07776723614574	0.550394407909386	1
Merged-chr11-68433172-2	chr11	68433072	68433272	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177320, intron 1 of 18)	intron (NM_177320, intron 1 of 18)	1047.0	NM_177320	320207.0	Mm.244960	NM_177320	ENSMUSG00000020901	Pik3r5	AV230647|F730038I15Rik|Foap2|p101	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-122655319-2	chr6	122655219	122655419	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR22_Mur|LTR|ERVK	28895.0	NM_139218	73708.0	Mm.27982	NM_139218	ENSMUSG00000046323	Dppa3	2410075G02Rik|PCG7|PGC7|Stella	developmental pluripotency-associated 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-20976465-2	chr9	20976365	20976565	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010333, intron 1 of 1)	CpG	328.0	NM_010333	14739.0	Mm.46493	NM_010333	ENSMUSG00000043895	S1pr2	1100001A16Rik|Edg5|Gpcr13|H218|LPb2|S1P2	sphingosine-1-phosphate receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-35800743-3	chr12	35800659	35800859	+	649.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-105641.0	NR_045050	71581.0	Mm.100110	NR_045050	ENSMUSG00000113985	9130015A21Rik	100043575|Gm4527	RIKEN cDNA 9130015A21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-60770809-2	chr2	60770709	60770909	+	767.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001141932, intron 6 of 14)	intron (NM_001141932, intron 6 of 14)	-48206.0	NM_001159564	16420.0	Mm.98193	NM_021359	ENSMUSG00000026971	Itgb6	2210409C20Rik|4831415H04Rik	integrin beta 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-96912323-5	chr5	96912170	96912370	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-9002.0	NR_131152	666266.0	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	0.480035443691954	0.841592231987079	0.353872342538066	0.764925331807807	0.900702654747395	0.361964430833762	0.355328340010733	0.770854194073553	-0.00139798824540457	0.999370828714976	1
Merged-chr2-155367823-4	chr2	155367754	155367954	+	973.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-10430.0	NM_001004721	228812.0	Mm.5434	NM_001004721	ENSMUSG00000038383	Pigu	5430426F17Rik|BC028278|Cdc91l1	phosphatidylinositol glycan anchor biosynthesis, class U	protein-coding	5.65328573633703	5.42248022876097	5.69767857956371	5.83664298327298	4.90675503334994	3.98449982068361	4.24082246014243	4.91539960073231	-1.25812847603953	0.00010144624789885	0.00310856358965891
Merged-chr17-5732678-2	chr17	5732578	5732778	+	639.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 8 of 8)	intron (NM_146073, intron 8 of 8)	-65979.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-41550151-2	chr5	41550016	41550216	+	761.25	f0_c57.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	157575.0	NM_001310592	100972.0	Mm.41555	NM_027295	ENSMUSG00000029128	Rab28	2700023P08Rik|AW496496	RAB28, member RAS oncogene family	protein-coding	1.42966753491466	1.51543421063304	1.32692711720104	0.782600868340141	1.44333044947402	1.75942679203268	0.796820012327611	0.784548983118999	-0.0636527172966986	0.964598267469819	0.998431161219273
Merged-chr2-32487355-4	chr2	32487242	32487442	+	910.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-35872.0	NM_146118	227731.0	Mm.37395	NM_146118	ENSMUSG00000026819	Slc25a25	1110030N17Rik|MCSC|mKIAA1896	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-107294408-4	chr8	107294299	107294499	+	979.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286260, intron 1 of 12)	CpG	929.0	NM_133957	54446.0	Mm.390057	NM_018823	ENSMUSG00000003847	Nfat5	AI225870|B130038B15Rik|CAG-8|CAG80|NFATL1|OREBP|TonEBP|mKIAA0827|nfatz	nuclear factor of activated T cells 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-26436454-3	chr14	26436375	26436575	+	718.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310445, intron 16 of 22)	B2_Mm2|SINE|B2	78928.0	NR_038005	71106.0	Mm.158564	NR_038005	ENSMUSG00000021874	4933413J09Rik	GCSE	RIKEN cDNA 4933413J09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-38486116-4	chr2	38486013	38486213	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25584.0	NM_021606	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-25251975-3	chr9	25251884	25252084	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_001205367)	promoter-TSS (NM_001205367)	-7.0	NM_001359736	235072.0	Mm.270259	NM_009859	ENSMUSG00000001833	Sept7	Cdc10|E430034N22	septin 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-77202116-3	chr2	77202027	77202227	+	633.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175465, intron 10 of 17)	intron (NM_175465, intron 10 of 17)	-31492.0	NM_001025576	545428.0	Mm.26579	NM_001025576	ENSMUSG00000044033	Ccdc141	2610301F02Rik|CAMDI	coiled-coil domain containing 141	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-135607888-3	chr3	135607798	135607998	+	850.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008689, intron 13 of 24)	MER44A|DNA|TcMar-Tigger	83649.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-23739764-4	chr13	23739654	23739854	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_015786)	TTS (NM_015786)	947.0	NM_015786	50708.0	Mm.193539	NM_015786	ENSMUSG00000036181	Hist1h1c	0610008C09Rik|H1.2|H1c|H1f2|H1var1|His1a	histone cluster 1, H1c	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139251394-2	chr5	139251271	139251471	+	776.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026269)	promoter-TSS (NM_026269)	-953.0	NM_001359238	67604.0	Mm.270137	NM_026269	ENSMUSG00000025858	Get4	1110007L15Rik|AW412535|Cee	golgi to ER traffic protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-113379082-4	chr13	113378997	113379197	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	123747.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-120940323-2	chr1	120940223	120940423	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-147082.0	NR_038008	98452.0	Mm.131017	NR_038008	ENSMUSG00000097881	Celrr	AI848258|B230209K01Rik|Celr|Gm818	cerebellum expressed regulatory RNA	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-94301236-7	chr13	94301118	94301318	+	949.897949	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15387.0	NM_001346609	107767.0	Mm.201455	NM_029153	ENSMUSG00000021687	Scamp1	4930505M11Rik|AI415563|AW122395	secretory carrier membrane protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-16686072-1	chr1	16685972	16686172	+	703.0	f1_balb.idr	Intergenic	B1_Mm|SINE|Alu	-2384.0	NM_016923	17087.0	Mm.116844	NM_016923	ENSMUSG00000025779	Ly96	ESOP-1|MD-2|MD2	lymphocyte antigen 96	protein-coding	-0.202256013204645	0.442054719676769	-0.184358716866054	-0.19099525925187	-0.200560916782559	1.12476936469804	-0.182480893617476	-0.189828145112693	1.66212534738478	0.474307784759479	1
Merged-chr8-35375605-4	chr8	35375539	35375739	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177741)	promoter-TSS (NM_177741)	-102.0	NM_177741	244416.0	Mm.247126	NM_177741	ENSMUSG00000046794	Ppp1r3b	6430576E21|AW821953|GL|PTG	protein phosphatase 1, regulatory (inhibitor) subunit 3B	protein-coding	4.26640966790403	4.14765310445018	4.86536956158465	4.53077521606702	5.16485705359861	5.0863222757243	4.68511276747561	4.4061757634569	0.483560835505245	0.195990144683688	0.67745443837728
Merged-chr8-46869535-4	chr8	46869428	46869628	+	994.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-117359.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-4192083-2	chr5	4191983	4192183	+	697.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001042670)	promoter-TSS (NM_001042670)	-284.0	NM_001042670	208595.0	Mm.129815	NM_001042670	ENSMUSG00000053178	Mterf1b	Gm9897	mitochondrial transcription termination factor 1b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-56754906-3	chr18	56754827	56755027	+	964.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47114.0	NM_010721	16906.0	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-125542766-4	chr7	125542668	125542868	+	905.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9514.0	NM_001008700	16190.0	Mm.233802	NM_010557	ENSMUSG00000030748	Il4ra	CD124|Il4r	interleukin 4 receptor, alpha	protein-coding	1.17825321930116	0.382159637835585	0.374229228070201	0.541634013858436	0.51454249605436	0.906020527487595	0.375982212948317	0.933965283404596	0.149808514310247	0.931821149697008	1
Merged-chr8-71663672-2	chr8	71663557	71663757	+	706.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001029873, intron 4 of 41)	intron (NM_001029873, intron 4 of 41)	8100.0	NM_001029873	382018.0	Mm.334606	NM_001029873	ENSMUSG00000034799	Unc13a	2410078G03Rik|Munc13-1	unc-13 homolog A (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-86899398-1	chr4	86899298	86899498	+	794.333313	f0_balb.idr	intron (NM_001290541, intron 3 of 4)	intron (NM_001290541, intron 3 of 4)	24984.0	NM_139306	230379.0	Mm.45019	NM_139306	ENSMUSG00000038007	Acer2	2410116I05Rik|Asah3l|CRG-L1|maCER2	alkaline ceramidase 2	protein-coding	-0.786262629245248	-0.776497758068123	-0.779701483814774	-0.782170269015053	-0.785654354407548	-0.270941693778889	-0.778995247043066	-0.348526007787681	3.17456216948478	0.277662686590329	1
Merged-chr8-117257368-5	chr8	117257300	117257500	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001163262, exon 1 of 21)	exon (NM_001163262, exon 1 of 21)	381.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-3004902-2	chr18	3004802	3005002	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	118510.0	NM_001167539	100312476.0	Mm.480293	NM_001167539	ENSMUSG00000091539	Vmn1r238	-	vomeronasal 1 receptor, 238	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122398562-2	chr5	122398462	122398662	+	638.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019824, intron 2 of 6)	B3|SINE|B2	6684.0	NM_019824	56378.0	Mm.275942	NM_019824	ENSMUSG00000029465	Arpc3	1110006A04Rik|p21-ARC|p21-Ar|p21Arc	actin related protein 2/3 complex, subunit 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101618996-1	chr7	101618896	101619096	+	643.0	f1_c57bl6.idr	Intergenic	L1M5|LINE|L1	-37835.0	NM_019915	11872.0	Mm.57008	NM_019915	ENSMUSG00000030651	Art2b	ART2.2|ARTC2|Art|Ly92b|Rt-6|Rt6|Rt6-2	ADP-ribosyltransferase 2b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-31094759-2	chr5	31094659	31094859	+	715.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347323, intron 1 of 8)	intron (NM_001347323, intron 1 of 8)	-1232.0	NM_011773	22784.0	Mm.1396	NM_011773	ENSMUSG00000029151	Slc30a3	Znt3	solute carrier family 30 (zinc transporter), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-144303640-2	chr1	144303540	144303740	+	556.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3B|LINE|L1	-54536.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-60045790-2	chr11	60045690	60045890	+	892.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290012, intron 1 of 6)	intron (NM_001290012, intron 1 of 6)	699.0	NM_001290012	18618.0	Mm.2731	NM_008819	ENSMUSG00000000301	Pemt	PEAMT|PEMT2|PLMT|Pempt|Pempt2	phosphatidylethanolamine N-methyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41825166-2	chr19	41825066	41825266	+	830.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4804.0	NM_008043	14296.0	Mm.4573	NM_008043	ENSMUSG00000067199	Frat1	AW060382	frequently rearranged in advanced T cell lymphomas	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-124350404-1	chr8	124350304	124350504	+	1000.0	f1_balb.idr	Intergenic	Intergenic	83532.0	NM_171824	209966.0	Mm.234233	NM_171824	ENSMUSG00000050751	Pgbd5	2900019M05Rik|AI854313	piggyBac transposable element derived 5	protein-coding	2.01762365819461	2.37893176505215	1.20382907490567	1.89657104860843	1.53531103458814	1.7058832625609	2.57633032314333	2.02987151223726	0.226624083232713	0.825355039511545	0.998431161219273
Merged-chr4-105240979-2	chr4	105240879	105241079	+	780.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17B|LTR|ERVK	83632.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-40739440-2	chr19	40739340	40739540	+	631.700012	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009848, exon 10 of 10)	3' UTR (NM_009848, exon 10 of 10)	79670.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-114918776-2	chr6	114918676	114918876	+	571.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356371, intron 2 of 5)	intron (NM_001356371, intron 2 of 5)	3045.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-123340402-4	chr4	123340299	123340499	+	948.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007558, intron 1 of 6)	intron (NM_007558, intron 1 of 6)	2853.0	NM_001256019	12163.0	Mm.439749	NM_007558	ENSMUSG00000032726	Bmp8a	Bmp7r1|OP-2|OP2	bone morphogenetic protein 8a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-159517754-2	chr3	159517654	159517854	+	864.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001172092, intron 6 of 11)	RLTR11A2|LTR|ERVK	22321.0	NM_001172092	76131.0	Mm.371655	NM_029523	ENSMUSG00000028175	Depdc1a	5830484J08Rik|Depdc1	DEP domain containing 1a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-132000632-2	chr1	132000532	132000732	+	694.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-6973.0	NM_007923	13714.0	Mm.254233	NM_007923	ENSMUSG00000026436	Elk4	2310011G17Rik|A130026I01Rik|BB162516|SAP-1|Sap1	ELK4, member of ETS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-128381434-4	chr6	128381344	128381544	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027697, intron 2 of 2)	intron (NM_027697, intron 2 of 2)	5934.0	NM_027697	71149.0	Mm.483176	NM_027697	ENSMUSG00000079304	Tex52	4933413G19Rik	testis expressed 52	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-54686207-2	chr14	54686103	54686303	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_021437)	promoter-TSS (NM_021437)	32.0	NM_021437	58248.0	Mm.197509	NM_021437	ENSMUSG00000040822	1700123O20Rik	MNCb-2990	RIKEN cDNA 1700123O20 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5714078-2	chr17	5713978	5714178	+	626.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 4 of 8)	intron (NM_146073, intron 4 of 8)	-84579.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-86670036-4	chr4	86669937	86670137	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007408)	promoter-TSS (NM_007408)	22.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-95716330-4	chr4	95716226	95716426	+	877.229126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029347, intron 6 of 10)	intron (NM_029347, intron 6 of 10)	136905.0	NM_029347	75578.0	Mm.276098	NM_029347	ENSMUSG00000028573	Fggy	2310009E04Rik	FGGY carbohydrate kinase domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115061722-4	chr11	115061639	115061839	+	850.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172050, intron 1 of 3)	intron (NM_172050, intron 1 of 3)	300.0	NM_172050	217306.0	Mm.222667	NM_172050	ENSMUSG00000048498	Cd300e	BC034097|CLM2|Cd300le|TREM5	CD300E molecule	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-11517571-4	chr19	11517466	11517666	+	912.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027209)	promoter-TSS (NM_027209)	-993.0	NM_027209	69774.0	Mm.436639	NM_027209	ENSMUSG00000024677	Ms4a6b	1810027D10Rik	membrane-spanning 4-domains, subfamily A, member 6B	protein-coding	2.11755098114342	2.54463944023303	3.68879561528199	2.07877037615595	2.50299805371345	2.69914988660695	1.7354740011505	3.2219826740447	-0.284336377294049	0.73329572338601	0.998431161219273
Merged-chr17-86447318-4	chr17	86447208	86447408	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011104, intron 2 of 14)	intron (NM_011104, intron 2 of 14)	-160130.0	NR_045435	72104.0	Mm.443401	NR_045435	ENSMUSG00000100738	2010106C02Rik	-	RIKEN cDNA 2010106C02 gene	ncRNA	5.90635687170827	5.27374893422786	6.03780955782795	5.88171125510432	6.03985932743154	6.31703510885754	5.68842341957252	5.92599153413855	0.220162567922389	0.389713141395504	0.878821374845813
Merged-chr3-67576954-4	chr3	67576839	67577039	+	844.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5829.0	NM_025813	66868.0	Mm.491153	NM_025813	ENSMUSG00000027775	Mfsd1	1200003O06Rik	major facilitator superfamily domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-122619095-3	chr3	122618990	122619190	+	955.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114665, intron 1 of 15)	CpG	624.0	NM_153118	214459.0	Mm.209491	NM_153118	ENSMUSG00000039735	Fnbp1l	2610318I01Rik|AW548221|TOCA1|toca-1	formin binding protein 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-13054775-4	chr7	13054660	13054860	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290453)	promoter-TSS (NM_001290453)	4.0	NM_001290452	109889.0	Mm.10103	NM_145819	ENSMUSG00000030380	Mzf1	Mzf-2|Mzf2|Zfp121|Zfp98|Znf42	myeloid zinc finger 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-67997080-3	chr8	67997000	67997200	+	870.4722289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-22526.0	NM_177698	234353.0	Mm.32525	NM_027626	ENSMUSG00000030465	Psd3	4931420C21Rik|AI661273|BC003498|D430018P08|EFA6D	pleckstrin and Sec7 domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-130178927-3	chr2	130178721	130178921	+	898.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009225, intron 1 of 6)	CpG	543.0	NM_009225	20638.0	Mm.88216	NM_009225	ENSMUSG00000027404	Snrpb	AL024368|AU018828|SM-B|SM11|SMB|SNRNP-B	small nuclear ribonucleoprotein B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-120955841-4	chr4	120955740	120955940	+	978.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4139.0	NM_001005788	381549.0	Mm.331840	NM_001005788	ENSMUSG00000064141	Zfp69	Gm1029|Krab2|Zfp63	zinc finger protein 69	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139747820-2	chr5	139747715	139747915	+	753.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11482.0	NM_174850	231830.0	Mm.240510	NM_174850	ENSMUSG00000036718	Micall2	A930021H16Rik|JRAB|MICAL-L2|mFLJ00139	MICAL-like 2	protein-coding	-1.00889295329784	-0.99108363469249	-1.00272438891682	-1.00550846905646	-1.00839030617611	-0.988561034691512	-0.541909310070216	-0.699179411987023	2.83733230312755	0.363951738899942	1
Merged-chr1-95366426-4	chr1	95366329	95366529	+	865.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC5|LINE|L1	52801.0	NM_026321	67698.0	Mm.272705	NM_026321	ENSMUSG00000051185	Fam174a	2310044D20Rik|Fam174|Naa6|Tmem157	family with sequence similarity 174, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-68136670-4	chr10	68136564	68136764	+	996.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023598, intron 4 of 9)	intron (NM_023598, intron 4 of 9)	142062.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	1.1262805962365	0.675376618813015	0.659102661714696	0.866823004386108	0.828118566489625	1.31393476017469	2.19630002896356	1.21024717473655	2.58033250380466	0.069509730854464	0.396000831335166
Merged-chr13-5716961-4	chr13	5716871	5717071	+	980.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	141121.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-18235077-6	chr16	18234904	18235104	+	881.861084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172151, exon 1 of 11)	exon (NM_172151, exon 1 of 11)	132.0	NM_172151	27801.0	Mm.326263	NM_172151	ENSMUSG00000060166	Zdhhc8	D16H22S1738E|DHHC-8|E330009O14Rik|Op53c05|ZDHHCL1	zinc finger, DHHC domain containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-14279510-2	chr2	14279410	14279610	+	622.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008625, intron 10 of 29)	RMER15|LTR|ERVL	18507.0	NR_030609	100124488.0		NR_030609	ENSMUSG00000077897	Mir511	Mirn511|mir-511|mmu-mir-511	microRNA 511	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-65799384-2	chr18	65799284	65799484	+	596.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVL-E-int|LTR|ERVL	-1194.0	NM_025468	66286.0	Mm.27800	NM_025468	ENSMUSG00000024516	Sec11c	1810029G24Rik|Sec11l3	SEC11 homolog C, signal peptidase complex subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-115316025-3	chr10	115315945	115316145	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024454)	promoter-TSS (NM_024454)	-454.0	NM_024454	216344.0	Mm.21936	NM_024454	ENSMUSG00000020132	Rab21	9630024B22	RAB21, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-150567865-1	chr2	150567765	150567965	+	544.0	f1_c57bl6.idr	Intergenic	Intergenic	-2550.0	NM_009977	13011.0	Mm.12965	NM_009977	ENSMUSG00000068129	Cst7	Cmap	cystatin F (leukocystatin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-92514473-2	chr13	92514373	92514573	+	605.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_173392, intron 5 of 17)	ORR1F|LTR|ERVL-MaLR	16337.0	NM_173392	218441.0	Mm.259585	NM_173392	ENSMUSG00000021706	Zfyve16	AI035632|B130024H06Rik|B130031L15|mKIAA0305	zinc finger, FYVE domain containing 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-29024309-2	chr6	29024209	29024409	+	916.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	1690.0	NR_029567	387237.0		NR_029567	ENSMUSG00000065469	Mir129-1	Mirn129-1|Mirn129b|miR-129b|mir-129-1	microRNA 129-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-121592891-2	chr10	121592790	121592990	+	623.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359618, intron 24 of 24)	intron (NM_001359618, intron 24 of 24)	-6096.0	NM_019786	56480.0	Mm.34580	NM_019786	ENSMUSG00000020115	Tbk1	1200008B05Rik|AI462036|AW048562	TANK-binding kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-77485204-6	chr8	77485092	77485292	+	806.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030113, intron 1 of 22)	intron (NM_030113, intron 1 of 22)	-31864.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-77795309-3	chr11	77795191	77795391	+	704.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011586, intron 1 of 39)	intron (NM_011586, intron 1 of 39)	-6007.0	NM_001291214	360013.0	Mm.341248	NM_011586	ENSMUSG00000000631	Myo18a	MAJN|MyoPDZ|MysPDZ|SP-R210	myosin XVIIIA	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-67606676-2	chr18	67606576	67606776	+	695.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34679.0	NM_001357523	225659.0	Mm.111928	NM_001081073	ENSMUSG00000073542	Cep76	6230425F05Rik|9630013E05	centrosomal protein 76	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-4561147-2	chr2	4561047	4561247	+	895.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177844, intron 1 of 11)	intron (NM_001177844, intron 1 of 11)	1393.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-31940958-2	chr16	31940898	31941098	+	558.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172822, intron 1 of 2)	intron (NM_172822, intron 1 of 2)	7147.0	NM_172822	239827.0	Mm.440388	NM_172822	ENSMUSG00000045625	Pigz	F630022B06Rik	phosphatidylinositol glycan anchor biosynthesis, class Z	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64813651-4	chr5	64813541	64813741	+	904.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008453, intron 1 of 5)	intron (NM_008453, intron 1 of 5)	10118.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-67775303-4	chr18	67775201	67775401	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_045376)	TTS (NR_045376)	425.0	NM_028112	72124.0	Mm.307315	NM_028112	ENSMUSG00000079614	Seh1l	2610007A16Rik|AW540070|SEC13L|SEH1A|SEH1B|Seh1	SEH1-like (S. cerevisiae	protein-coding	0.597642845188612	0.457525373014135	1.22207166170621	0.635130465701971	0.42569114993383	0.691428718500403	1.59992472293363	0.639007365338926	0.762391167202538	0.632107578462395	0.982230082053879
Merged-chr3-38237813-3	chr3	38237728	38237928	+	913.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29709.0	NR_040541	71342.0	Mm.410782	NR_040541	ENSMUSG00000106002	5430434I15Rik	-	RIKEN cDNA 5430434I15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-117298309-2	chr9	117298209	117298409	+	760.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001172121, intron 2 of 14)	intron (NM_001172121, intron 2 of 14)	-45826.0	NM_001172124	207181.0	Mm.326411	NM_178660	ENSMUSG00000039607	Rbms3	6720477E09Rik|8430436O14Rik	RNA binding motif, single stranded interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118479755-5	chr11	118479674	118479874	+	986.900024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153103, intron 3 of 13)	B1_Mus2|SINE|Alu	2942.0	NM_001359368	217364.0	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-66131568-6	chr9	66131452	66131652	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359210, intron 1 of 3)	intron (NM_001359210, intron 1 of 3)	4941.0	NM_026635	68250.0	Mm.27107	NM_026635	ENSMUSG00000032381	Fam96a	5730536A07Rik	family with sequence similarity 96, member A	protein-coding	2.39483240137242	2.57294828523176	1.69694703335341	2.02471871885102	2.59111230307598	3.06770519142284	2.38559886696395	2.42992687295723	0.942781760656312	0.247045001066721	0.74636039687725
Merged-chr4-138426884-4	chr4	138426787	138426987	+	938.4874880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7785.0	NM_026689	68350.0	Mm.103413	NM_026689	ENSMUSG00000041241	Mul1	0610009K11Rik|AV000801|Gide	mitochondrial ubiquitin ligase activator of NFKB 1	protein-coding	4.2161896272944	3.96567365218002	3.83107053180406	4.71018038257806	3.7655215055029	3.26333857699674	4.37900866331236	5.2101341851777	0.175980683123105	0.727986689840858	0.998431161219273
Merged-chr5-73134023-3	chr5	73133933	73134133	+	734.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028194, intron 5 of 62)	intron (NM_028194, intron 5 of 62)	122585.0	NM_028194	72313.0	Mm.260594	NM_028194	ENSMUSG00000070733	Fryl	2010313D22Rik|2310004H21Rik|2510002A14Rik|9030227G01Rik|mKIAA0826	FRY like transcription coactivator	protein-coding	3.6642547741213	1.6991839233395	4.34793169133925	4.01330052991513	4.10796745641352	2.27884854112708	2.39929156770616	3.69583225866616	-0.542690634103335	0.638592229132304	0.982599433509505
Merged-chr1-88699869-2	chr1	88699769	88699969	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177305, exon 1 of 1)	3' UTR (NM_177305, exon 1 of 1)	2322.0	NM_177305	320982.0	Mm.27968	NM_177305	ENSMUSG00000049866	Arl4c	A630084M22Rik|Arl7|LAK	ADP-ribosylation factor-like 4C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128082774-3	chr2	128082669	128082869	+	815.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028765, intron 15 of 17)	intron (NM_028765, intron 15 of 17)	-43269.0	NM_207681	12125.0	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-23651525-3	chr9	23651431	23651631	+	935.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	428455.0	NM_028472	73230.0	Mm.335020	NM_028472	ENSMUSG00000031963	Bmper	3110056H04Rik|CV-2|Crim3|Cv2	BMP-binding endothelial regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80669755-2	chr10	80669655	80669855	+	654.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021462, intron 6 of 13)	intron (NM_021462, intron 6 of 13)	6538.0	NM_021462	17347.0	Mm.42126	NM_021462	ENSMUSG00000020190	Mknk2	2010016G11Rik|Gprk7|Mnk2	MAP kinase-interacting serine/threonine kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-164085895-4	chr2	164085796	164085996	+	960.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021420, intron 3 of 10)	intron (NM_021420, intron 3 of 10)	11718.0	NM_021420	58231.0	Mm.234472	NM_021420	ENSMUSG00000018209	Stk4	AI447339|AU020804|Kas-2|Mst1|Ysk3	serine/threonine kinase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-26586761-3	chr2	26586655	26586855	+	818.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164564, intron 1 of 8)	CpG	125.0	NM_001164564	353156.0	Mm.268933	NM_178444	ENSMUSG00000026921	Egfl7	VE-statin|Zneu1	EGF-like domain 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-194999614-3	chr1	194999515	194999715	+	862.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17784.0	NR_015566	320977.0	Mm.99905	NR_015566	ENSMUSG00000096929	A330023F24Rik	C030002C11Rik	RIKEN cDNA A330023F24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115058533-2	chr11	115058433	115058633	+	640.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_172050, intron 1 of 3)	intron (NM_172050, intron 1 of 3)	3506.0	NM_172050	217306.0	Mm.222667	NM_172050	ENSMUSG00000048498	Cd300e	BC034097|CLM2|Cd300le|TREM5	CD300E molecule	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-83633951-2	chr7	83633851	83634051	+	678.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023377, intron 3 of 5)	intron (NM_023377, intron 3 of 5)	1934.0	NM_023377	170460.0	Mm.357953	NM_023377	ENSMUSG00000046027	Stard5	2310058G22Rik|AI607880|D7Ertd152e	StAR-related lipid transfer (START) domain containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-155099650-4	chr1	155099559	155099759	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010500)	promoter-TSS (NM_010500)	-23.0	NM_010500	15939.0	Mm.12246	NM_010500	ENSMUSG00000056708	Ier5	-	immediate early response 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-96625320-1	chr10	96625220	96625420	+	558.0	f0_balb.idr	Intergenic	Intergenic	8319.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-60287946-2	chr10	60287846	60288046	+	750.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001146124, intron 1 of 13)	intron (NM_001146124, intron 1 of 13)	3485.0	NM_001146124	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-12979232-2	chr7	12979132	12979332	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001168561, exon 2 of 5)	exon (NM_001168561, exon 2 of 5)	1384.0	NM_001168561	269870.0	Mm.62083	NM_175558	ENSMUSG00000033961	Zfp446	A630035I11Rik|A930031C22|AA120513|AV306632	zinc finger protein 446	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-124752601-3	chr4	124752485	124752685	+	845.511108	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008385, intron 7 of 23)	intron (NM_008385, intron 7 of 23)	-1231.0	NR_151694	102634646.0	Mm.348378	NR_151694		Gm12915	-	predicted gene 12915	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-110830752-2	chr12	110830652	110830852	+	839.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_011973, intron 2 of 11)	(GGA)n|Simple_repeat|Simple_repeat	10187.0	NM_011973	26448.0	Mm.140948	NM_011973	ENSMUSG00000056458	Mok	RAGE1|Rage|Stk30	MOK protein kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-80843950-2	chr18	80843878	80844078	+	748.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_015805, intron 10 of 28)	intron (NM_015805, intron 10 of 28)	90080.0	NM_001201569	50771.0	Mm.247138	NM_015805	ENSMUSG00000024566	Atp9b	AA934181|Atpc2b|IIb|MMR	ATPase, class II, type 9B	protein-coding	-0.49840664201179	-0.652559344667922	0.380228079349879	-0.661061095647301	-0.666365035426364	-0.651487601602333	-0.656282565149571	-0.660409247511622	-3.62746233986149	0.175107776941155	1
Merged-chr7-100876512-1	chr7	100876412	100876612	+	612.0	f1_balb.idr	exon (NM_001081116, exon 20 of 21)	exon (NM_001081116, exon 20 of 21)	5897.0	NR_037289	100526508.0		NR_037289	ENSMUSG00000093296	Mir3102	mmu-mir-3102	microRNA 3102	ncRNA	-0.332090229506693	-0.319126419015562	-0.323379295055267	0.384500386353012	0.04778097941871	-0.318166981601723	-0.143091849041136	-0.326084377736013	-0.671444861557844	0.786811304784586	1
Merged-chr3-89729934-3	chr3	89729874	89730074	+	926.644409	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019655)	promoter-TSS (NM_019655)	-744.0	NM_001146296	56417.0	Mm.316628	NM_019655	ENSMUSG00000027951	Adar	AV242451|Adar1|Adar1p110|Adar1p150|DRADA|mZaADAR	adenosine deaminase, RNA-specific	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-49140896-4	chr14	49140814	49141014	+	906.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-31332.0	NM_027492	70646.0	Mm.275688	NM_027492	ENSMUSG00000036282	Naa30	4930487N19Rik|5730533P17Rik|AI447922|AW322455|Nat12	N(alpha)-acetyltransferase 30, NatC catalytic subunit	protein-coding	3.00328348921948	3.26972503381381	3.41499994185047	2.32974628419582	3.25369954904124	3.47282270433009	3.08756512224492	3.26167088485595	0.356134224352065	0.562800321504509	0.960362415684079
Merged-chr6-55507749-2	chr6	55507649	55507849	+	999.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	55771.0	NM_007407	11517.0	Mm.44245	NM_007407	ENSMUSG00000029778	Adcyap1r1	2900024I10Rik|AI846590|PAC1|PAC1R|PACAP1-R	adenylate cyclase activating polypeptide 1 receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5804895-3	chr19	5804854	5805054	+	925.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	AT_rich|Low_complexity|Low_complexity	-2282.0	NR_002847	72289.0	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101473921-2	chr11	101473821	101474021	+	874.6666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	5746.0	NM_009708	11858.0	Mm.378883	NM_009708	ENSMUSG00000001313	Rnd2	Arhn|Rohn|rho7	Rho family GTPase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101248141-4	chr15	101248034	101248234	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18712.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127513648-2	chr10	127513548	127513748	+	913.8333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1291.0	NM_001098789	407790.0	Mm.336856	NM_001098789	ENSMUSG00000040280	Ndufa4l2	BC064011	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-85449689-4	chr9	85449586	85449786	+	888.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-122536.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-85413993-4	chr9	85413864	85414064	+	998.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-86814.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-109027771-4	chr3	109027629	109027829	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163567)	promoter-TSS (NM_001163567)	-122.0	NM_001163567	329739.0	Mm.69013	NM_001163567	ENSMUSG00000040339	Fam102b	1600010D10Rik|B430201A12Rik	family with sequence similarity 102, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-106841641-2	chr4	106841545	106841745	+	709.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36638.0	NM_001347159	329910.0	Mm.222956	NM_025590	ENSMUSG00000034853	Acot11	1110020M10Rik|2010309H15Rik|AW060409|BFIT|BFIT1|Thea|Them1|mKIAA0707	acyl-CoA thioesterase 11	protein-coding	-0.61702243745495	-0.607035559936551	-0.610320332445244	-0.0970814891698997	-0.475649907265772	-0.256245023033334	-0.609596919199087	-0.612405393885242	-0.25076176607119	0.926046165889952	1
Merged-chr12-83989512-2	chr12	83989412	83989612	+	580.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134188, intron 1 of 2)	B2_Mm2|SINE|B2	1651.0	NM_134188	171210.0	Mm.371675	NM_134188	ENSMUSG00000021226	Acot2	AA571646|MTE-I|Mte1	acyl-CoA thioesterase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-142045429-4	chr4	142045258	142045458	+	848.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145402, intron 1 of 2)	ID_B1|SINE|B4	27460.0	NR_131014	78917.0	Mm.139995	NR_131014	ENSMUSG00000085761	4930455G09Rik	-	RIKEN cDNA 4930455G09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-61517092-2	chr11	61516992	61517192	+	704.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_010148)	TTS (NM_010148)	11948.0	NM_001330781	27078.0	Mm.261226	NM_013717	ENSMUSG00000001039	B9d1	AW045994|B9|Eppb9	B9 protein domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-30512154-4	chr16	30512057	30512257	+	999.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172614, exon 10 of 10)	3' UTR (NM_172614, exon 10 of 10)	38421.0	NM_172614	224090.0	Mm.241459	NM_172614	ENSMUSG00000022537	Tmem44	1700007N03Rik|9330161C17Rik|B230220N21	transmembrane protein 44	protein-coding	4.38757355509015	5.55429179377752	4.59082751197203	4.85705520890872	5.07769669800231	5.08986418662814	4.06856194799163	5.14983385948307	-4.32183137646713e-05	0.999911117077241	0.999966680042182
Merged-chr8-126819480-2	chr8	126819380	126819580	+	789.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29540.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-9411971-4	chr14	9411877	9412077	+	986.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-472118.0	NR_030680	100042415.0	Mm.235938	NR_030680	ENSMUSG00000089686	Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-12291804-2	chr12	12291704	12291904	+	601.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029758, intron 2 of 12)	intron (NM_029758, intron 2 of 12)	29665.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-71555756-3	chr6	71555684	71555884	+	881.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361405, intron 2 of 6)	RMER19B|LTR|ERVK	9661.0	NM_001355674	66700.0	Mm.181278	NM_025783	ENSMUSG00000053119	Chmp3	25.1|4921505F14Rik|9130011K15Rik|CGI-49|D6Ertd286e|NEDF|Vps24	charged multivesicular body protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95053895-4	chr3	95053809	95054009	+	687.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Rod|LINE|L1	-11295.0	NM_008951	19185.0	Mm.2261	NM_008951	ENSMUSG00000005625	Psmd4	Af1|Mcb1|angiocidin	proteasome (prosome, macropain) 26S subunit, non-ATPase, 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-47503679-2	chr19	47503579	47503779	+	683.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175360, intron 9 of 9)	intron (NM_175360, intron 9 of 9)	-9303.0	NR_045322	100503104.0	Mm.442735	NR_045322	ENSMUSG00000097990	Gm19557	-	predicted gene, 19557	ncRNA	-0.520821539515656	-0.871583049742127	-0.877923506059039	-0.88003680827373	-0.416899165617375	-0.868958809369053	-0.877318134074192	-0.879668109448034	0.445988717269444	0.886418580920667	1
Merged-chr5-88961537-3	chr5	88961458	88961658	+	828.283325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359211, intron 3 of 26)	intron (NM_001359211, intron 3 of 26)	-66408.0	NM_001359212	54403.0	Mm.41044	NM_018760	ENSMUSG00000060961	Slc4a4	AI835705|NBC|NBC1	solute carrier family 4 (anion exchanger), member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-73227319-3	chr14	73227215	73227415	+	803.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009029, intron 17 of 26)	intron (NM_009029, intron 17 of 26)	-10576.0	NM_175116	67168.0	Mm.390681	NM_175116	ENSMUSG00000033446	Lpar6	2610302I02Rik|P2ry5|P2y5	lysophosphatidic acid receptor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-56754855-3	chr10	56754746	56754946	+	716.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	322865.0	NR_152768	102640560.0	Mm.417249	NR_152768		Gm36595	-	predicted gene, 36595	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-33955721-4	chr17	33955604	33955804	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011296)	promoter-TSS (NM_011296)	-63.0	NM_011296	20084.0	Mm.298745	NM_011296	ENSMUSG00000008668	Rps18	H-2Ke3|H2-Ke3|Ke-3|ke3	ribosomal protein S18	protein-coding	5.13674005158901	4.13926454063011	5.32986579855673	5.56770846272855	5.25013292859907	5.35912719876004	5.16980977441231	4.92048255146882	0.0424066737338366	0.901523032737872	0.998431161219273
Merged-chr8-83609852-2	chr8	83609752	83609952	+	619.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_018808, exon 2 of 3)	exon (NM_018808, exon 2 of 3)	1304.0	NM_001308227	81489.0	Mm.282092	NM_018808	ENSMUSG00000005483	Dnajb1	0610007I11Rik|DjB1|HSPF1|Hdj1|Hsp40	DnaJ heat shock protein family (Hsp40) member B1	protein-coding	-0.662826441749988	-1.00555184936033	-1.01675512286785	-1.01992432642343	-0.654846858003193	-1.00312405325568	-1.01421894731451	-1.01959449741028	0.0418081237259606	0.989738874530268	1
Merged-chr5-18010488-4	chr5	18010350	18010550	+	967.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081143, intron 5 of 7)	intron (NM_001081143, intron 5 of 7)	47880.0	NM_001081143	242851.0	Mm.332230	NM_001081143	ENSMUSG00000028777	Gnat3	Ggust|Gtn	guanine nucleotide binding protein, alpha transducing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-138161050-4	chr5	138160948	138161148	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_012002)	promoter-TSS (NM_012002)	-54.0	NM_012002	26893.0	Mm.3981	NM_012002	ENSMUSG00000019494	Cops6	Sgn3|VIP/MOV34	COP9 signalosome subunit 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-108246522-4	chr5	108246388	108246588	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22409.0	NM_026106	13486.0	Mm.303534	NM_026106	ENSMUSG00000029265	Dr1	1700121L09Rik|Dr1l|NC2|NC2beta	down-regulator of transcription 1	protein-coding	5.96810218342264	5.25605457374879	5.40608947579129	5.14369505422306	6.24581104703082	5.40324350654764	6.27510689661899	5.96575196072133	0.589731653509619	0.0414212751231694	0.290967481807837
Merged-chr17-56996157-2	chr17	56996057	56996257	+	648.666626	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_017393, exon 6 of 6)	3' UTR (NM_017393, exon 6 of 6)	-1182.0	NM_025538	66400.0	Mm.196150	NM_025538	ENSMUSG00000002661	Alkbh7	2310045B01Rik|2510008E23Rik|Abh7|Spata11	alkB homolog 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-25456227-2	chr14	25456127	25456327	+	610.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2958.0	NM_001310666	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-53478312-1	chr3	53478212	53478412	+	664.0	f1_balb.idr	exon (NM_173382, exon 11 of 13)	exon (NM_173382, exon 11 of 13)	-10481.0	NM_153156	229277.0	Mm.222810	NM_153156	ENSMUSG00000027744	Stoml3	Epb7.2l|SLP3|sro	stomatin (Epb7.2)-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-79713802-4	chr2	79713708	79713908	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110980, intron 2 of 2)	intron (NR_110980, intron 2 of 2)	6028.0	NM_001290743	75276.0	Mm.257373	NM_172420	ENSMUSG00000034683	Ppp1r1c	4930565M23Rik|4930579P15Rik	protein phosphatase 1, regulatory (inhibitor) subunit 1C	protein-coding	4.69436406105604	4.88064165278066	3.99811000280044	4.69454280050689	5.00174343022497	5.11512868117854	3.86950796918175	4.54380033242901	0.136741090101093	0.734363637459843	0.998431161219273
Merged-chr8-106403440-2	chr8	106403340	106403540	+	707.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11899.0	NM_011764	22751.0	Mm.295582	NM_011764	ENSMUSG00000031907	Zfp90	6430515L01Rik|KRAB17|NK10|Zfp64|Zfp83|mKIAA1954	zinc finger protein 90	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-37231333-4	chr6	37231229	37231429	+	972.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347104, intron 1 of 32)	intron (NM_001347104, intron 1 of 32)	68647.0	NM_001081206	320127.0	Mm.119469	NM_001081206	ENSMUSG00000038665	Dgki	6430604M11Rik|C130010K08Rik	diacylglycerol kinase, iota	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-91055138-4	chr1	91055067	91055267	+	948.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008515, intron 1 of 22)	intron (NM_008515, intron 1 of 22)	1723.0	NM_001310732	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-27791024-1	chr5	27790924	27791124	+	880.0	f0_balb.idr	intron (NM_018878, intron 1 of 20)	CpG	526.0	NM_018878	55982.0	Mm.277190	NM_018878	ENSMUSG00000002221	Paxip1	D5Ertd149e|PTIP	PAX interacting (with transcription-activation domain) protein 1	protein-coding	-0.366626417179347	-0.352692175281507	-0.357249875608969	0.28625245588711	-0.365754612910758	-0.35166575818681	-0.356244039914784	0.294119739107777	0.0282770312316891	0.991511101680898	1
Merged-chr10-60346033-2	chr10	60345933	60346133	+	655.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159572)	promoter-TSS (NM_001159572)	-818.0	NM_001159572	74048.0	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-67321626-2	chr15	67321520	67321720	+	605.0	f0_balb.idr|f0_c57.idr	intron (NR_045140, intron 5 of 8)	RLTR24B_MM|LTR|ERV1	94851.0	NR_045140	69334.0	Mm.63770	NR_045140	ENSMUSG00000102069	1700012I11Rik	-	RIKEN cDNA 1700012I11 gene	ncRNA	2.03813602858092	2.29856318959075	3.80608904265394	2.58062071617928	2.46474021882883	3.00377656866683	2.90296453928401	2.70848345572689	-0.20940728088495	0.784844812816334	0.998431161219273
Merged-chr2-115581658-4	chr2	115581550	115581750	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145898)	promoter-TSS (NM_001145898)	-66.0	NM_207264	399568.0	Mm.134929	NM_207264	ENSMUSG00000040282	BC052040	-	cDNA sequence BC052040	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-88735852-3	chr18	88735746	88735946	+	808.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	158361.0	NM_018821	54607.0	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36462024-1	chr1	36461924	36462124	+	576.0	f0_balb.idr	Intergenic	Intergenic	-9573.0	NM_033570	94220.0	Mm.422638	NM_033570	ENSMUSG00000037408	Cnnm4	5430430O18Rik|Acdp4	cyclin M4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-76365240-2	chr16	76365140	76365340	+	564.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_173440, intron 1 of 3)	intron (NM_173440, intron 1 of 3)	7809.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-44394135-4	chr19	44394034	44394234	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009127)	TTS (NM_009127)	13575.0	NM_009127	20249.0	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-15284147-4	chr3	15284053	15284253	+	852.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48149.0	NM_001076679	751864.0	Mm.431296	NM_001076679	ENSMUSG00000078783	Gm9733	-	predicted gene 9733	protein-coding	1.87926419361037	2.58237188430678	2.92210488721048	2.54701015385788	2.72245713319344	2.60101899784971	2.9443236632774	2.94007238067099	0.558595349047788	0.449521166364701	0.915783612300828
Merged-chr6-136858444-1	chr6	136858344	136858544	+	580.5	f0_balb.idr	promoter-TSS (NM_026639)	promoter-TSS (NM_026639)	-844.0	NM_026639	109978.0	Mm.31840	NM_026639	ENSMUSG00000030217	Art4	4432404K01Rik|ARTC4|DO|DOK1	ADP-ribosyltransferase 4	protein-coding	1.29540149332408	0.719831648456501	1.06142507990273	0.880033518158185	1.61587582470842	0.93407208015877	1.20968962491946	0.883738334069537	0.84612531994903	0.541464409351744	0.954866069207078
Merged-chr2-3419133-4	chr2	3419025	3419225	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355210)	promoter-TSS (NM_001355210)	4.0	NM_001355207	104362.0	Mm.2688	NM_008579	ENSMUSG00000026650	Meig1	MLZ-278|Meg1	meiosis expressed gene 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-155667193-3	chr4	155667098	155667298	+	796.916687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145124, intron 1 of 18)	intron (NM_145124, intron 1 of 18)	2056.0	NM_001256108	76580.0	Mm.235738	NM_145124	ENSMUSG00000029060	Mib2	2210008I11Rik|Zzank1|skd	mindbomb E3 ubiquitin protein ligase 2	protein-coding	0.484921845567416	0.028675845263387	0.0231175530448092	0.18374347942226	0.285741306911767	0.76187163962572	0.0243437728088648	0.0195764190797865	0.848986627182977	0.684228806613288	1
Merged-chr5-99377895-2	chr5	99377795	99377995	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 2 of 3)	intron (NR_030692, intron 2 of 3)	-124968.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-146855219-1	chr6	146855119	146855319	+	699.0	f0_balb.idr	intron (NM_027059, intron 2 of 9)	MTE2b|LTR|ERVL-MaLR	5109.0	NM_027059	69371.0	Mm.252733	NM_027059	ENSMUSG00000030292	Smco2	1700023A16Rik	single-pass membrane protein with coiled-coil domains 2	protein-coding	1.13902716020294	1.77440810140978	0.986775439693341	1.65782280495384	0.947172479886104	1.91906602049315	2.15272997239777	1.89347989589235	1.14926012165448	0.34947250826872	0.850156357300912
Merged-chr4-146455679-2	chr4	146455611	146455811	+	598.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085522, intron 1 of 3)	RMER17B|LTR|ERVK	6681.0	NM_001085522	433791.0	Mm.276881	NM_001085522	ENSMUSG00000070605	Zfp992	Gm13251	zinc finger protein 992	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53110481-2	chr4	53110381	53110581	+	640.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 5 of 49)	intron (NM_013454, intron 5 of 49)	49414.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-40293109-1	chr12	40293009	40293209	+	545.0	f1_balb.idr	Intergenic	Intergenic	69745.0	NR_045157	629820.0	Mm.435540	NR_045157	ENSMUSG00000035983	Gm7008	EG629820	predicted gene 7008	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-93973679-3	chr16	93973523	93973723	+	659.511108	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019500, intron 1 of 2)	G-rich|Low_complexity|Low_complexity	35214.0	NM_019500	56173.0	Mm.328716	NM_019500	ENSMUSG00000047109	Cldn14	AI851731	claudin 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139382137-3	chr5	139382056	139382256	+	953.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030258, intron 1 of 1)	intron (NM_030258, intron 1 of 1)	1517.0	NM_030258	80290.0	Mm.270003	NM_030258	ENSMUSG00000044197	Gpr146	BC003323|D830046C22Rik|PGR8	G protein-coupled receptor 146	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-23425663-4	chr13	23425557	23425757	+	896.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	tRNA-Tyr-TAC|tRNA|tRNA	-1791.0	NM_013924	30946.0	Mm.292094	NM_013924	ENSMUSG00000036376	Abt1	-	activator of basal transcription 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72375355-2	chr6	72375233	72375433	+	840.0	f0_balb.idr|f0_c57.idr	intron (NM_016872, intron 1 of 2)	MIR|SINE|MIR	5135.0	NM_001080742	53620.0	Mm.440321	NM_016872	ENSMUSG00000073002	Vamp5	AF119384|Camp	vesicle-associated membrane protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-59199552-4	chr4	59199466	59199666	+	809.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011673, intron 1 of 8)	intron (NM_011673, intron 1 of 8)	10016.0	NM_011673	22234.0	Mm.198803	NM_011673	ENSMUSG00000028381	Ugcg	AU043821|C80537|Epcs21|GlcT-1|Ugcgl	UDP-glucose ceramide glucosyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-99193047-5	chr4	99192989	99193189	+	829.623352	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175029)	promoter-TSS (NM_175029)	-845.0	NM_175029	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-59207310-1	chr3	59207210	59207410	+	591.0	f0_balb.idr	TTS (NM_028808)	TTS (NM_028808)	3572.0	NM_028808	74191.0	Mm.90067	NM_028808	ENSMUSG00000036362	P2ry13	2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174	purinergic receptor P2Y, G-protein coupled 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-21723103-2	chr4	21723003	21723203	+	708.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR17|LTR|ERVK	-4598.0	NM_001290422	51813.0	Mm.278584	NM_016746	ENSMUSG00000028252	Ccnc	AI451004|AU020987|CG1C	cyclin C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167257354-4	chr2	167257260	167257460	+	832.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-16823.0	NM_008968	19223.0	Mm.2339	NM_008968	ENSMUSG00000017969	Ptgis	Cyp8|Cyp8a1|Pgis	prostaglandin I2 (prostacyclin) synthase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-69048703-2	chr5	69048603	69048803	+	717.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPLTR2b|LTR|ERVK	293006.0	NM_175519	243043.0	Mm.234821	NM_175519	ENSMUSG00000037653	Kctd8	A730087N02Rik	potassium channel tetramerisation domain containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-31288387-3	chr5	31288304	31288504	+	766.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026298, intron 1 of 47)	intron (NM_026298, intron 1 of 47)	2710.0	NM_026298	67661.0	Mm.293023	NM_026298	ENSMUSG00000038564	Ift172	4930553F24Rik|Slb|avc1|wim	intraflagellar transport 172	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102742340-2	chr12	102742240	102742440	+	734.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_022323, exon 2 of 2)	exon (NM_022323, exon 2 of 2)	1321.0	NM_001142937	64113.0	Mm.291222	NM_022323	ENSMUSG00000096458	Moap1	AA987038|Map-1|Pnma4	modulator of apoptosis 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-30300576-4	chr6	30300499	30300699	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009459, intron 1 of 6)	intron (NM_009459, intron 1 of 6)	3940.0	NM_009459	22214.0	Mm.332967	NM_009459	ENSMUSG00000039159	Ube2h	1500009C23Rik|AI181839|AI326965|AI462483|AW227540|E2-20K|Gid3|N28148|Ubc8	ubiquitin-conjugating enzyme E2H	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85531151-2	chr12	85531051	85531251	+	973.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57261.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-4369318-4	chr18	4369230	4369430	+	798.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_040328)	TTS (NR_040328)	-6262.0	NM_001361008	67440.0	Mm.49826	NM_026157	ENSMUSG00000024234	Mtpap	0610027A18Rik|AW551379|Papd1	mitochondrial poly(A) polymerase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-115570511-4	chr8	115570422	115570622	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	136372.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-23257461-4	chr11	23257366	23257566	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001035226, intron 2 of 25)	intron (NM_001035226, intron 2 of 25)	1425.0	NM_134014	103573.0	Mm.217547	NM_134014	ENSMUSG00000020290	Xpo1	AA420417|Crm1|Exp1	exportin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111183076-2	chr12	111182976	111183176	+	646.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_130987, intron 1 of 3)	ID_B1|SINE|B4	1415.0	NR_130987	78062.0	Mm.427248	NR_130987	ENSMUSG00000083193	4930595D18Rik	-	RIKEN cDNA 4930595D18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-77452101-4	chr8	77452016	77452216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030113, intron 1 of 22)	(A)n|Simple_repeat|Simple_repeat	-64940.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-78915105-4	chr2	78915020	78915220	+	766.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356395, intron 4 of 5)	intron (NM_001356395, intron 4 of 5)	45442.0	NR_151457	22193.0	Mm.1485	NM_009454	ENSMUSG00000027011	Ube2e3	Ubce4|ubcM2	ubiquitin-conjugating enzyme E2E 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-18876290-5	chr11	18876273	18876473	+	852.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	142596.0	NM_001193271	17268.0	Mm.356578	NM_010789	ENSMUSG00000020160	Meis1	C530044H18Rik|Evi8	Meis homeobox 1	protein-coding	0.243751403534578	0.265707936025344	0.258548840752233	0.253003289120927	0.923220766079535	0.472001024093055	0.965248003285244	0.701915687711925	4.32035652356759	0.0217110156481103	1
Merged-chr6-137757819-4	chr6	137757723	137757923	+	989.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172733, intron 1 of 8)	MTC|LTR|ERVL-MaLR	3246.0	NM_172733	232449.0	Mm.29181	NM_172733	ENSMUSG00000030225	Dera	2010002D22Rik|2500002K03Rik|DEOC	deoxyribose-phosphate aldolase (putative)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-31332800-3	chr15	31332681	31332881	+	977.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027496, intron 1 of 3)	MTEa-int|LTR|ERVL-MaLR	34978.0	NM_001357923	67434.0	Mm.102470	NM_026153	ENSMUSG00000022237	Ankrd33b	0610012A05Rik|3021401C12Rik|5730557B15Rik	ankyrin repeat domain 33B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-96503498-3	chr9	96503398	96503598	+	711.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24823.0	NM_001311135	19823.0	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-79255958-4	chr2	79255829	79256029	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010576, intron 1 of 27)	intron (NM_010576, intron 1 of 27)	503.0	NM_010576	16401.0	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-20142090-2	chr13	20141997	20142197	+	708.0	f0_balb.idr|f1_balb.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	51590.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	3.14341521011545	3.27525327986897	2.97410736802292	2.98585929708664	2.54432300019971	3.74797434555054	3.19006645590625	1.5541836861621	-0.176086838848448	0.813486623075069	0.998431161219273
Merged-chr5-41709688-2	chr5	41709588	41709788	+	792.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	-1509.0	NM_001310590	100972.0	Mm.41555	NM_027295	ENSMUSG00000029128	Rab28	2700023P08Rik|AW496496	RAB28, member RAS oncogene family	protein-coding	1.18736794075411	1.05018607821178	2.77057080977112	1.91474379930738	1.38989158185486	1.05656461424948	2.5858550575389	1.92596251750199	-0.138654832061837	0.906770621953568	0.998431161219273
Merged-chr9-15015828-4	chr9	15015781	15015981	+	778.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019482, intron 2 of 4)	intron (NM_019482, intron 2 of 4)	29597.0	NM_019482	55991.0	Mm.142253	NM_019482	ENSMUSG00000031934	Panx1	AI847747	pannexin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-110130950-1	chr11	110130850	110131050	+	744.0	f1_c57bl6.idr	intron (NM_147220, intron 23 of 38)	intron (NM_147220, intron 23 of 38)	-35013.0	NM_153145	217258.0	Mm.344148	NM_153145	ENSMUSG00000041828	Abca8a	-	ATP-binding cassette, sub-family A (ABC1), member 8a	protein-coding	3.60060947717615	2.5538611339401	2.22179320583935	2.37355885327014	1.18745775122488	1.04491358325986	1.00463811028465	0.968135781053031	-5.39201073400638	2.55592068716914e-05	0.000993496859762051
Merged-chr8-83166093-4	chr8	83165978	83166178	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027758, exon 1 of 18)	exon (NM_027758, exon 1 of 18)	726.0	NM_027758	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-106446855-1	chr4	106446755	106446955	+	595.0	f1_balb.idr	intron (NM_153565, intron 9 of 11)	intron (NM_153565, intron 9 of 11)	17470.0	NM_153565	100102.0	Mm.133268	NM_153565	ENSMUSG00000044254	Pcsk9	AI415265|AI747682|FH3|HCHOLA3|Narc1|PC9	proprotein convertase subtilisin/kexin type 9	protein-coding	1.12681406385094	0.991162553282353	0.459588883907185	0.452739474590092	1.14028864681887	1.00148020895775	0.4615392365432	0.453939127986423	0.0408616426312795	0.98173510665009	1
Merged-chr2-3420403-2	chr2	3420303	3420503	+	571.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355205, intron 1 of 3)	intron (NM_001355205, intron 1 of 3)	-1274.0	NM_001355209	104362.0	Mm.2688	NM_008579	ENSMUSG00000026650	Meig1	MLZ-278|Meg1	meiosis expressed gene 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-34020860-2	chr3	34020760	34020960	+	722.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113189, intron 1 of 16)	intron (NM_001113189, intron 1 of 16)	781.0	NM_001113189	14359.0	Mm.259021	NM_008053	ENSMUSG00000027680	Fxr1	1110050J02Rik|9530073J07Rik|AI851072|Fxr1h|Fxr1p	fragile X mental retardation gene 1, autosomal homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-70202777-2	chr10	70202677	70202877	+	696.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1887.0	NM_001304739	69563.0	Mm.64672	NM_001304739	ENSMUSG00000019933	Mrln	2310015B20Rik|Linc-RAM|Mln	myoregulin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-33730213-2	chr8	33730110	33730310	+	603.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A2|LTR|ERVL-MaLR	-1704.0	NM_001167921	68153.0	Mm.286104	NM_026584	ENSMUSG00000031585	Gtf2e2	34kDa|AI462509|C330006J08Rik	general transcription factor II E, polypeptide 2 (beta subunit)	protein-coding	-0.230307646926299	-0.290548593707237	-0.487284188027412	-0.490229702923107	-0.494386154021681	-0.48259873876704	0.191694670477941	-0.48971537944223	0.947334707148718	0.714865408520534	1
Merged-chr6-91186651-2	chr6	91186551	91186751	+	660.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26113.0	NM_001081437	14115.0	Mm.249146	NM_007992	ENSMUSG00000064080	Fbln2	5730577E14Rik|FIBL-2	fibulin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-54075813-4	chr10	54075694	54075894	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_038016)	promoter-TSS (NR_038016)	2.0	NM_008548	17155.0	Mm.117294	NM_008548	ENSMUSG00000003746	Man1a	Man1a1|PCR1	mannosidase 1, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-118762636-4	chr2	118762482	118762682	+	908.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001001982)	promoter-TSS (NM_001001982)	79.0	NM_001001982	214239.0	Mm.379342	NM_001001982	ENSMUSG00000045838	A430105I19Rik	Ccdc9b|Gm353	RIKEN cDNA A430105I19 gene	protein-coding	2.57528532043916	2.69034333913477	2.23802701761035	2.94134327223027	2.3189271598883	1.49228514837839	2.25521343412898	2.7260268444337	-0.766850323292386	0.360187744078428	0.856327306866984
Merged-chr6-126939607-4	chr6	126939514	126939714	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138594)	promoter-TSS (NM_138594)	-27.0	NM_009013	19362.0	Mm.204634	NM_009013	ENSMUSG00000030346	Rad51ap1	2510006L10Rik|RAB22	RAD51 associated protein 1	protein-coding	2.6741545040697	2.90799600365388	3.07589678895887	3.13558205686616	1.61585046107732	3.20588245257227	2.33473136028513	1.69734657582535	-1.10750568375717	0.173313505976301	0.640902961210202
Merged-chr15-101256243-4	chr15	101256136	101256336	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10610.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	3.43965142938253	3.90158234017308	3.50239038729853	2.69873677565984	3.01396916549832	3.56311685608281	3.36155420625956	3.25945587042869	-0.225602069702317	0.696119459066922	0.997923870727665
Merged-chr8-27259066-2	chr8	27258966	27259166	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-1261.0	NM_007918	13685.0	Mm.6700	NM_007918	ENSMUSG00000031490	Eif4ebp1	4e-bp1|AA959816|PHAS-I	eukaryotic translation initiation factor 4E binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-96721442-2	chr10	96721342	96721542	+	602.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	104441.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83651011-2	chr6	83650911	83651111	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016751, intron 4 of 6)	intron (NM_016751, intron 4 of 6)	5105.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	1.889660786561	2.2257479884001	1.63404669702653	1.7431994814252	1.90462205825116	2.2422416562322	1.64496415154615	1.75132504428498	0.0382088016393766	0.968528922079526	0.998431161219273
Merged-chr8-84011371-4	chr8	84011277	84011477	+	922.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_035431)	TTS (NR_035431)	256.0	NR_035431	100316677.0		NR_035431	ENSMUSG00000080665	Mir1199	Mirn1199|mir-1199|mmu-mir-1199	microRNA 1199	ncRNA	-1.50874880059862	-1.47511716453926	-1.4852876488768	-1.49364198752927	-1.50638792193216	-0.992828729615453	-1.48298527415345	-1.4921465649048	2.3185461113984	0.50391666537493	1
Merged-chr4-148774916-2	chr4	148774816	148775016	+	736.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29476.0	NM_001159344	69743.0	Mm.233879	NM_027195	ENSMUSG00000028977	Casz1	2410019P08Rik|AV096627|BC040081|Cst|D4Ertd432e	castor zinc finger 1	protein-coding	-2.18138529563533	-2.15523716995652	-2.1631445789866	-2.16963996020037	-2.05513010215571	-2.15352360143315	-2.16135451490766	-2.16847729006863	0.759018020146679	0.829933115115583	1
Merged-chr11-26211033-2	chr11	26210933	26211133	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027973)	promoter-TSS (NR_027973)	-457.0	NR_027973	70626.0	Mm.379180	NM_027486		5730522E02Rik	-	RIKEN cDNA 5730522E02 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-79252992-1	chr3	79252892	79253092	+	864.3333130000001	f0_balb.idr	intron (NR_045502, intron 2 of 2)	intron (NR_045502, intron 2 of 2)	40073.0	NR_045502	70924.0	Mm.444622	NR_045502	ENSMUSG00000104585	4921511C10Rik	-	RIKEN cDNA 4921511C10 gene	ncRNA	1.4200699610564	1.99146790124859	1.80658479007545	2.12134452399263	0.925988284678112	1.76238931565356	1.20306179585851	0.951533409476341	-2.06002227518001	0.0952559857769146	0.47819301981231
Merged-chr10-117742081-1	chr10	117741981	117742181	+	550.0	f1_c57bl6.idr	intron (NM_029875, intron 2 of 4)	intron (NM_029875, intron 2 of 4)	4277.0	NM_029875	215436.0	Mm.256753	NM_029875	ENSMUSG00000060181	Slc35e3	9330166G04Rik|AI481200	solute carrier family 35, member E3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-13215689-2	chr17	13215589	13215789	+	546.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-5499.0	NM_013741	27263.0	Mm.371809	NM_013741	ENSMUSG00000073458	Smok2a	Smok2	sperm motility kinase 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-94214507-4	chr8	94214423	94214623	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357266)	promoter-TSS (NM_001357266)	-41.0	NM_001357266	71805.0	Mm.458170	NM_172410	ENSMUSG00000032939	Nup93	2410008G02Rik	nucleoporin 93	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-149173737-3	chr3	149173643	149173843	+	626.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-100994.0	NR_040591	381482.0	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101550001-2	chr7	101549893	101550093	+	925.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1I|LTR|ERVL-MaLR	5809.0	NM_007490	11871.0	Mm.439746	NM_007490	ENSMUSG00000092517	Art2a-ps	ARTC2|Art2a|Ly92a|Rt-6|Rt6|Rt6-1	ADP-ribosyltransferase 2a, pseudogene	protein-coding	1.55012736811924	0.870486552510277	1.05654781217604	1.32456917479915	1.6462255377812	0.873403368789579	1.50100451599208	1.45090023515895	0.663069557389657	0.618384977669369	0.977853948300882
Merged-chr15-96476575-4	chr15	96476479	96476679	+	906.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15736.0	NM_028148	72193.0	Mm.324474	NM_028148	ENSMUSG00000033228	Scaf11	1110061H03Rik|2610510E10Rik|AI462454|CASP11|SIP1|SRRP129|Sfrs2ip|Srsf2ip|mKIAA3013	SR-related CTD-associated factor 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-24393585-4	chr5	24393488	24393688	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029020)	promoter-TSS (NM_029020)	-568.0	NM_029020	74610.0	Mm.283914	NM_029020	ENSMUSG00000028973	Abcb8	4833412N02Rik|AA409895	ATP-binding cassette, sub-family B (MDR/TAP), member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-57517295-4	chr9	57517193	57517393	+	853.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3939.0	NM_007747	12858.0	Mm.273403	NM_007747	ENSMUSG00000000088	Cox5a	AA959768|CcOX	cytochrome c oxidase subunit Va	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59006989-2	chr15	59006889	59007089	+	806.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144800, intron 3 of 14)	intron (NM_144800, intron 3 of 14)	73179.0	NM_023172	66218.0	Mm.322294	NM_023172	ENSMUSG00000022354	Ndufb9	1190008J14Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-49056975-2	chr13	49056875	49057075	+	731.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_029361, exon 23 of 28)	exon (NM_029361, exon 23 of 28)	88863.0	NR_015601	68128.0	Mm.426304	NR_015601		Fam120aos	C030044B11Rik	family with sequence similarity 120A, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-84348283-4	chr3	84348168	84348368	+	919.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31653.0	NR_040752	75309.0	Mm.159497	NR_040752	ENSMUSG00000104004	4930565D16Rik	-	RIKEN cDNA 4930565D16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-41933687-3	chr10	41933630	41933830	+	641.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034858, intron 12 of 17)	intron (NM_001034858, intron 12 of 17)	46291.0	NM_001013370	140742.0	Mm.139418	NM_001013370	ENSMUSG00000038332	Sesn1	1110002G11Rik|AU044290|Pa26|Sest1	sestrin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-108994587-4	chr8	108994499	108994699	+	997.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57739.0	NR_037295	100526511.0		NR_037295	ENSMUSG00000093241	Mir3108	mir-3108|mmu-mir-3108	microRNA 3108	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-45455361-2	chr13	45455261	45455461	+	939.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52083.0	NM_025508	66355.0	Mm.290802	NM_025508	ENSMUSG00000000253	Gmpr	2310004P21Rik|AV028449|GMPR 1	guanosine monophosphate reductase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-74673511-4	chr15	74673417	74673617	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001276684)	promoter-TSS (NM_001276684)	-947.0	NM_018790	11838.0	Mm.491310	NM_018790	ENSMUSG00000022602	Arc	Arc3.1|C86064|arg3.1|mArc	activity regulated cytoskeletal-associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133905367-4	chr4	133905269	133905469	+	753.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-17572.0	NM_009097	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-3943670-4	chr10	3943565	3943765	+	748.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033253, intron 10 of 15)	intron (NM_001033253, intron 10 of 15)	-29410.0	NM_001170786	270685.0	Mm.184752	NM_172308	ENSMUSG00000040675	Mthfd1l	2410004L15Rik|AI647056|Fthfsdc1	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-77928287-2	chr15	77928187	77928387	+	660.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019913, intron 1 of 3)	intron (NM_019913, intron 1 of 3)	707.0	NM_019913	56551.0	Mm.291917	NM_019913	ENSMUSG00000005354	Txn2	2510006J11Rik|AI788873|Trx2	thioredoxin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-133335313-4	chr3	133335210	133335410	+	981.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293641, intron 5 of 11)	intron (NM_001293641, intron 5 of 11)	25200.0	NM_001293641	74776.0	Mm.210305	NM_146141	ENSMUSG00000028013	Ppa2	1110013G13Rik|Sid6306	pyrophosphatase (inorganic) 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-5520910-4	chr11	5520826	5521026	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001271730, exon 1 of 6)	5' UTR (NM_001271730, exon 1 of 6)	285.0	NM_001271730	22433.0	Mm.469937	NM_013842	ENSMUSG00000020484	Xbp1	D11Ertd39e|TREB-5|TREB5|XBP-1	X-box binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-10470666-4	chr15	10470550	10470750	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030046)	promoter-TSS (NM_030046)	-134.0	NM_030046	78244.0	Mm.297862	NM_030046	ENSMUSG00000044224	Dnajc21	4930461P20Rik|9930116P15Rik	DnaJ heat shock protein family (Hsp40) member C21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-40325174-4	chr9	40325064	40325264	+	953.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151734, intron 3 of 18)	intron (NR_151734, intron 3 of 18)	-3841.0	NM_001357622	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100122362-2	chr7	100122262	100122462	+	582.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133692)	promoter-TSS (NM_133692)	-862.0	NM_133692	67967.0	Mm.37562	NM_133692	ENSMUSG00000030726	Pold3	2410142G14Rik|C85233|P66|P68	polymerase (DNA-directed), delta 3, accessory subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126882944-2	chr8	126882844	126883044	+	961.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	33924.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-27217230-4	chr3	27217157	27217357	+	939.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 1 of 4)	intron (NM_178772, intron 1 of 4)	34253.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131094079-4	chr1	131093969	131094169	+	945.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008551, intron 1 of 9)	intron (NM_008551, intron 1 of 9)	3774.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	3.78042777902003	3.46488097753725	4.02237759048784	3.3439106935003	3.96160400937097	4.18066944474292	2.73833924002229	3.74982918348349	0.115123435162787	0.830152669750025	0.998431161219273
Merged-chr10-14117181-4	chr10	14117085	14117285	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358783, intron 4 of 12)	intron (NM_001358783, intron 4 of 12)	150806.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-83857345-4	chr7	83857251	83857451	+	931.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26990.0	NM_030705	80889.0	Mm.272998	NM_030705	ENSMUSG00000070462	Tlnrd1	AW061151|Mesdc1	talin rod domain containing 1	protein-coding	0.563694335139518	0.627623350294211	0.86860796463658	1.35481394700793	0.794354645720652	0.914494041520684	2.5065537133731	1.21729464202029	2.25238543624003	0.108201318812522	0.514749969513338
Merged-chr8-126849918-5	chr8	126849793	126849993	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_151740, exon 2 of 2)	non-coding (NR_151740, exon 2 of 2)	873.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70777537-2	chr14	70777437	70777637	+	780.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_010071, exon 5 of 5)	exon (NM_010071, exon 5 of 5)	3156.0	NM_010071	13449.0	Mm.243323	NM_010071	ENSMUSG00000022102	Dok2	DokR|Frip|dok-R	docking protein 2	protein-coding	-1.56355737717652	-1.81244775989375	-1.82128546162293	-1.82854501295842	-1.83962066705452	-1.81053259306168	-1.81928479966835	-1.82724555674025	-1.28500227969968	0.715751224811686	1
Merged-chr11-8566665-4	chr11	8566579	8566779	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 4 of 30)	intron (NM_001083587, intron 4 of 30)	97856.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	6.88336584308271	6.64630336545852	7.24137755683948	6.80582106423808	7.18763634059542	7.68067137739857	7.49190094745057	6.91828939961738	0.45369351093587	0.0214117859880184	0.187426027444731
Merged-chr2-6720283-2	chr2	6720183	6720383	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110232, intron 4 of 15)	intron (NM_001110232, intron 4 of 15)	1379.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81511845-3	chr15	81511694	81511894	+	975.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45478.0	NM_019712	56438.0	Mm.29405	NM_019712	ENSMUSG00000022400	Rbx1	1500002P15Rik|AA517855|ROC1	ring-box 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-80705354-1	chr18	80705254	80705454	+	632.0	f0_balb.idr	intron (NM_198429, intron 1 of 9)	intron (NM_198429, intron 1 of 9)	2819.0	NM_001164111	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-69888633-4	chr10	69888526	69888726	+	966.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_170729, intron 16 of 40)	intron (NM_170729, intron 16 of 40)	-36906.0	NM_170687	11735.0	Mm.235960	NM_009670	ENSMUSG00000069601	Ank3	2900054D09Rik|AI314020|Ank-3|AnkG|Ankyrin-3|Ankyrin-G	ankyrin 3, epithelial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-94192813-2	chr8	94192713	94192913	+	565.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13724.0	NM_013602	17748.0	Mm.192991	NM_013602	ENSMUSG00000031765	Mt1	MT-I|Mt-1	metallothionein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45125708-2	chr7	45125605	45125805	+	846.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_000003)	TTS (NR_000003)	730.0	NR_000003	27211.0		NR_000003	ENSMUSG00000065818	Snord35a	Rnu35a|U35|U35A	small nucleolar RNA, C/D box 35A	snoRNA	-2.18292257394068	-2.15545247547656	-2.03304972317742	-2.17058342868585	-2.18099422382073	-2.1536522739386	-2.16187909550322	-2.16936197735154	-0.683654500252594	0.846597994014493	1
Merged-chr10-80839661-2	chr10	80839561	80839761	+	633.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013758, intron 1 of 1)	ZP3AR|Satellite|Satellite	4137.0	NM_001359746	237403.0	Mm.40213	NM_001013758	ENSMUSG00000051067	Lingo3	AI851712|LERN2	leucine rich repeat and Ig domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64866052-1	chr5	64865952	64866152	+	546.0	f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	62529.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-73046746-4	chr12	73046658	73046858	+	942.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009189)	promoter-TSS (NM_009189)	-46.0	NM_009189	20471.0	Mm.4645	NM_009189	ENSMUSG00000051367	Six1	BB138287	sine oculis-related homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-126495997-1	chr2	126495897	126496097	+	687.333313	f0_balb.idr	intron (NM_001359975, intron 1 of 27)	intron (NM_001359975, intron 1 of 27)	3850.0	NM_001359975	241633.0	Mm.222235	NM_001080944	ENSMUSG00000060131	Atp8b4	Im	ATPase, class I, type 8B, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27819480-2	chr17	27819342	27819542	+	973.714294	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033279, intron 1 of 4)	intron (NM_001033279, intron 1 of 4)	1100.0	NM_001033279	224647.0	Mm.196577	NM_001033279	ENSMUSG00000056692	D17Wsu92e	AU020189|C030010A15|C80239	DNA segment, Chr 17, Wayne State University 92, expressed	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-45114091-4	chr2	45113974	45114174	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355289)	promoter-TSS (NM_001355289)	-795.0	NM_015753	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-101741144-3	chr4	101740997	101741197	+	910.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146146, intron 4 of 18)	RMER15|LTR|ERVL	23690.0	NM_010704	16847.0	Mm.259282	NM_010704	ENSMUSG00000057722	Lepr	LEPROT|Leprb|Modb1|OB-RGRP|Obr|db|diabetes|obese-like|obl	leptin receptor	protein-coding	2.2953933238405	2.03733409963361	2.49613869888499	2.03549289138275	1.54595456119292	1.50627954610085	2.42877255502601	1.19345106845846	-1.1999457888903	0.239113361206838	0.735635286471347
Merged-chr7-122453998-3	chr7	122453903	122454103	+	865.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316672, intron 3 of 16)	intron (NM_001316672, intron 3 of 16)	164878.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-9032823-3	chr5	9032724	9032924	+	802.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-35678.0	NM_023733	74114.0	Mm.28197	NM_023733	ENSMUSG00000003623	Crot	1200003H03Rik	carnitine O-octanoyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-115468167-3	chr6	115468063	115468263	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001308354, intron 6 of 7)	intron (NM_001308354, intron 6 of 7)	46097.0	NM_011146	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-51839808-3	chr13	51839709	51839909	+	960.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6866.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-110652490-4	chr9	110652398	110652598	+	810.395813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183276, intron 1 of 53)	intron (NM_183276, intron 1 of 53)	1663.0	NM_183276	235627.0	Mm.335481	NM_183276	ENSMUSG00000056724	Nbeal2	1110014F23Rik|BC042396|mKIAA0540	neurobeachin-like 2	protein-coding	-1.18832717429738	-1.16380929885254	-0.856565824811958	-1.18328408639367	-1.18787580914644	-1.16149229066421	-0.849604865165746	-1.18171197755832	0.0406512889656815	0.990321405100139	1
Merged-chr2-169536765-2	chr2	169536665	169536865	+	556.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-96881.0	NM_080455	228911.0	Mm.315789	NM_080455	ENSMUSG00000047907	Tshz2	2900073F20Rik|B830045G17|Mtsh2|Sdccag33l|Tsh2|Zfp218|mKIAA4248|teashirt2	teashirt zinc finger family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-62387788-3	chr15	62387672	62387872	+	673.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-168321.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	1.39709046431907	0.735657876753784	1.5443920754141	1.68818016839253	0.689859253329146	0.739128866337035	1.8559803822595	0.709878670417372	-0.895806806380413	0.561931550769487	0.960362415684079
Merged-chr15-98875613-2	chr15	98875513	98875713	+	856.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-4408.0	NM_001033276	381022.0	Mm.264889	NM_001033276	ENSMUSG00000048154	Kmt2d	ALR|BC032281|BC058659|C430014K11Rik|KMT2B|Mll2|Mll4	lysine (K)-specific methyltransferase 2D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-12943460-2	chr18	12943360	12943560	+	853.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1619.0	NM_207530	64291.0	Mm.259470	NM_020573	ENSMUSG00000044252	Osbpl1a	G430090F17Rik|Gm753|ORP-1|Osbpl1b	oxysterol binding protein-like 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-108784576-1	chr8	108784476	108784676	+	1000.0	f1_c57bl6.idr	intron (NM_007496, intron 1 of 9)	B3|SINE|B2	69932.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-115650417-4	chr8	115650330	115650530	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56464.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43262983-4	chr4	43262767	43262967	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081413, intron 38 of 39)	intron (NM_001081413, intron 38 of 39)	-4292.0	NM_177195	320571.0	Mm.74465	NM_177195	ENSMUSG00000028457	Atp8b5	4930417M19Rik|Feta	ATPase, class I, type 8B, member 5	protein-coding	3.57539728013886	2.78192377084194	3.34024355245019	2.92395623709107	3.51008741793814	2.1310913570734	1.53870313717683	2.4894675404181	-0.949589650359535	0.228497814351227	0.721861600842291
Merged-chr6-51523462-2	chr6	51523362	51523562	+	611.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001127349)	promoter-TSS (NM_001127349)	-441.0	NM_001361582	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122158211-4	chr5	122158074	122158274	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013636)	promoter-TSS (NM_013636)	-105.0	NM_013636	19047.0	Mm.280784	NM_013636	ENSMUSG00000004455	Ppp1cc	PP-1G|PP1|dis2m1	protein phosphatase 1, catalytic subunit, gamma isoform	protein-coding	0.119231453169246	0.219066436390452	1.90961145014565	0.1641295236923	0.126233071592746	0.225557808921988	2.94509506565201	0.168578547740115	1.681174607767	1	1
Merged-chr2-166489499-2	chr2	166489399	166489599	+	939.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42048.0	NR_015558	319684.0	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70360979-1	chr8	70360879	70361079	+	638.0	f1_c57bl6.idr	Intergenic	Intergenic	-7700.0	NM_001122829	19704.0	Mm.258280	NM_030680	ENSMUSG00000058301	Upf1	B430202H16Rik|NORF1|PNORF-1|Rent1|Upflp	UPF1 regulator of nonsense transcripts homolog (yeast)	protein-coding	1.16301054459888	2.29650922973049	2.81104262766658	3.10791584796777	2.04779655741885	1.28652192104716	2.23249560140745	2.02320389128133	-1.30992549495942	0.196228561000061	0.677629928399006
Merged-chr2-157080028-2	chr2	157079928	157080128	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164663)	promoter-TSS (NM_001164663)	-763.0	NM_001164663	320706.0	Mm.79466	NM_001164663	ENSMUSG00000055485	Soga1	9830001H06Rik|AI426038|D430036N24Rik|Soga	suppressor of glucose, autophagy associated 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-57511715-4	chr8	57511613	57511813	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008252)	promoter-TSS (NM_008252)	-130.0	NM_008252	97165.0	Mm.276881	NM_008252	ENSMUSG00000054717	Hmgb2	C80539|HMG-2|Hmg2	high mobility group box 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5812155-6	chr19	5812028	5812228	+	706.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9456.0	NR_002847	72289.0	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115645969-2	chr11	115645869	115646069	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001313936, intron 5 of 5)	intron (NM_001313936, intron 5 of 5)	-17674.0	NM_001252395	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-86141772-3	chr3	86141699	86141899	+	886.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_016959, exon 2 of 6)	exon (NM_016959, exon 2 of 6)	869.0	NM_016959	20091.0	Mm.391785	NM_016959	ENSMUSG00000028081	Rps3a1	Rps3a	ribosomal protein S3A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-8845355-1	chr17	8845255	8845455	+	758.0	f1_balb.idr	intron (NM_011866, intron 1 of 21)	intron (NM_011866, intron 1 of 21)	-4630.0	NM_001347321	23984.0	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	0.699403866848536	0.100873092950637	0.0934497565861327	0.0876756929805763	0.385224988025704	0.102537306560719	0.0950928020787632	1.12416350310545	1.33956242186382	0.525010181270739	1
Merged-chr9-53666407-2	chr9	53666307	53666507	+	742.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161618, intron 1 of 17)	intron (NM_001161618, intron 1 of 17)	1100.0	NM_001161618	75717.0	Mm.218910	NM_027807	ENSMUSG00000032030	Cul5	4921514I20Rik|8430423K24Rik|AI852817|C030032G03Rik|C330021I08Rik|VACM-1|VACM1	cullin 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-136114890-2	chr5	136114790	136114990	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TCC)n|Simple_repeat|Simple_repeat	-1801.0	NM_011293	20022.0	Mm.4896	NM_011293	ENSMUSG00000039771	Polr2j	14.5kDa|Polr2i|Rpb11a|Rpo2-4	polymerase (RNA) II (DNA directed) polypeptide J	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-23716457-4	chr13	23716329	23716529	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-5575.0	NM_010424	15216.0	Mm.2681	NM_010424	ENSMUSG00000006611	Hfe	MR2	hemochromatosis	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-99382712-4	chr9	99382602	99382802	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24172.0	NM_177775	272636.0	Mm.490440	NM_177775	ENSMUSG00000037681	Esyt3	D930024E11|D9Ertd280e|Fam62c|mKIAA4186	extended synaptotagmin-like protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-50357806-4	chr14	50357714	50357914	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_205819)	promoter-TSS (NM_205819)	-100.0	NM_205819	239081.0	Mm.291512	NM_205819	ENSMUSG00000051969	Tlr11	Gm287	toll-like receptor 11	protein-coding	4.68943819398403	5.00197540939315	4.64888171666748	4.48436426545432	5.01438217940226	3.57089345946557	3.65166168488017	4.25369486662995	-0.556806418502193	0.202105924110815	0.687970553475004
Merged-chr14-55109876-2	chr14	55109776	55109976	+	562.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177049, intron 4 of 5)	intron (NM_177049, intron 4 of 5)	-3283.0	NM_007455	11766.0	Mm.238879	NM_007455	ENSMUSG00000040701	Ap1g2	Adtg2|G2ad	adaptor protein complex AP-1, gamma 2 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-16575191-2	chr16	16575091	16575291	+	885.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301817, intron 1 of 16)	intron (NM_001301817, intron 1 of 16)	-14972.0	NM_139232	224014.0	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-123919844-4	chr1	123919763	123919963	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199021, intron 1 of 25)	intron (NM_199021, intron 1 of 25)	125696.0	NM_199021	269109.0	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124470733-4	chr5	124470715	124470915	+	748.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030259, intron 1 of 3)	intron (NM_030259, intron 1 of 3)	7420.0	NM_030259	80291.0	Mm.425280	NM_030259	ENSMUSG00000029401	Rilpl2	-	Rab interacting lysosomal protein-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-103187288-2	chr14	103187188	103187388	+	770.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_207215, intron 49 of 84)	Lx8b|LINE|L1	-87722.0	NM_001360342	50789.0	Mm.214746	NM_015822	ENSMUSG00000022124	Fbxl3	AU041772|AW212966|FBK|Fbl3a|Fbxl3a|Ovtm|Play68	F-box and leucine-rich repeat protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-73039637-4	chr9	73039465	73039665	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001308425)	promoter-TSS (NM_001308425)	134.0	NM_018889	55981.0	Mm.139905	NM_018889	ENSMUSG00000079469	Pigb	Pig-b	phosphatidylinositol glycan anchor biosynthesis, class B	protein-coding	3.11291348894921	2.969257803665	3.0947449481623	2.51326541388915	3.41720878483821	3.50964049790775	3.81111796512388	3.29489303630248	0.957395098186777	0.10108503619161	0.494758606565247
Merged-chr15-99388851-2	chr15	99388751	99388951	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4096.0	NM_026669	110213.0	Mm.16769	NM_026669	ENSMUSG00000023010	Tmbim6	5031406P05Rik|Bi1|Tegt	transmembrane BAX inhibitor motif containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-109481239-2	chr11	109481139	109481339	+	615.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028710, intron 1 of 13)	intron (NM_028710, intron 1 of 13)	-4653.0	NM_001361975	74008.0	Mm.482224	NM_028710	ENSMUSG00000020604	Arsg	6330406P08Rik|AI846872|ASG	arylsulfatase G	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-25476580-2	chr14	25476480	25476680	+	632.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	17395.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-24424434-4	chr8	24424333	24424533	+	984.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	14513.0	NM_026931	69068.0	Mm.25775	NM_026931	ENSMUSG00000056313	Tcim	1110065B09Rik|1810011O10Rik|AW121743|AW321058	transcriptional and immune response regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-107120083-3	chr3	107119840	107120040	+	826.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18373.0	NM_008417	16490.0	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	0.849563214358724	2.35583845675407	1.57187027948966	1.25160129661716	1.03336217744759	0.703384410255498	0.935719612459878	0.668320419429623	-3.07390802747512	0.0312083098104715	0.243457282903795
Merged-chr18-5334912-4	chr18	5334821	5335021	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178722)	promoter-TSS (NM_178722)	-114.0	NM_001360447	240186.0	Mm.118257	NM_178722	ENSMUSG00000050945	Zfp438	9430031G09|9430091M14Rik|B830013J05Rik	zinc finger protein 438	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-3360519-2	chr13	3360419	3360619	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-117784.0	NR_015522	76937.0	Mm.487240	NR_015522	ENSMUSG00000097709	2810429I04Rik	AI256682	RIKEN cDNA 2810429I04 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-16011378-2	chr13	16011278	16011478	+	983.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008380)	promoter-TSS (NM_008380)	-473.0	NM_008380	16323.0	Mm.8042	NM_008380	ENSMUSG00000041324	Inhba	-	inhibin beta-A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-146757434-4	chr5	146757299	146757499	+	979.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011669, intron 3 of 8)	intron (NM_011669, intron 3 of 8)	37557.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-18664084-3	chr19	18663989	18664189	+	637.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-6691.0	NM_026120	67383.0	Mm.306602	NM_026120	ENSMUSG00000024726	Carnmt1	2410127L17Rik	carnosine N-methyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-113648082-2	chr6	113647982	113648182	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 2 of 11)	RSINE1|SINE|B4	9615.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-102973084-7	chr2	102972969	102973169	+	955.1825560000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-71404.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-21634993-4	chr3	21634916	21635116	+	980.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER57E2|LTR|ERV1	-441636.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-33900327-4	chr1	33900241	33900441	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177235, intron 1 of 6)	intron (NM_177235, intron 1 of 6)	7280.0	NM_177235	320705.0	Mm.336619	NM_177235	ENSMUSG00000042182	Bend6	B230209C24Rik	BEN domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5442291-2	chr17	5442191	5442391	+	596.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTRIS6|LTR|ERV1	-2031.0	NM_027457	70544.0	Mm.46654	NM_027457	ENSMUSG00000004945	Tmem242	1110008A10Rik|2310046K16Rik|5730437N04Rik	transmembrane protein 242	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55697460-4	chr14	55697338	55697538	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6A|LTR|ERVK	-15621.0	NM_145705	28113.0	Mm.29346	NM_145705	ENSMUSG00000007589	Tinf2	AW552114|D14Wsu146e|Tin2	Terf1 (TRF1)-interacting nuclear factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-105633650-4	chr7	105633554	105633754	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285871)	promoter-TSS (NM_001285871)	-83.0	NM_001285871	55992.0	Mm.29290	NM_018880	ENSMUSG00000036989	Trim3	BERP1|HAC1|Rnf22	tripartite motif-containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-38938635-4	chr6	38938552	38938752	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 1 of 12)	intron (NM_011539, intron 1 of 12)	19666.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-37044869-4	chr17	37044818	37045018	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER20B|DNA|hAT-Charlie	-1048.0	NM_019439	54393.0	Mm.32191	NM_019439	ENSMUSG00000024462	Gabbr1	GABAB1|GABAbR1|bM573K1.1	gamma-aminobutyric acid (GABA) B receptor, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3904113-4	chr12	3904022	3904222	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153743, intron 14 of 17)	intron (NM_153743, intron 14 of 17)	12378.0	NM_153743	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-88437082-2	chr12	88436982	88437182	+	645.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361598, intron 4 of 9)	intron (NM_001361598, intron 4 of 9)	-59759.0	NR_045888	71818.0	Mm.490789	NR_045888	ENSMUSG00000113434	3200001D21Rik	-	RIKEN cDNA 3200001D21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85346600-4	chr12	85346487	85346687	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026775, intron 3 of 4)	intron (NM_026775, intron 3 of 4)	-7225.0	NM_145138	217718.0	Mm.29071	NM_145138	ENSMUSG00000034290	Nek9	C130021H08Rik	NIMA (never in mitosis gene a)-related expressed kinase 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-110181853-2	chr2	110181753	110181953	+	726.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	123872.0	NM_130452	170442.0	Mm.27335	NM_130452	ENSMUSG00000041660	Bbox1	AI874739	butyrobetaine (gamma), 2-oxoglutarate dioxygenase 1 (gamma-butyrobetaine hydroxylase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-20112747-3	chr13	20112654	20112854	+	877.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	22247.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	1.2694903443825	0.97174889563597	1.70893687602568	1.3507948453435	0.703578174858644	0.746108013591093	1.7252269702023	0.720720852304114	-1.05598835999212	0.475583646772492	0.927343103251982
Merged-chr2-33746664-2	chr2	33746564	33746764	+	737.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_175184, intron 9 of 9)	intron (NM_175184, intron 9 of 9)	-59152.0	NR_045729	320482.0	Mm.442057	NR_045729	ENSMUSG00000086484	Nron	A630071L07Rik|Gm24353	non-protein coding RNA, repressor of NFAT	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-8793449-1	chr10	8793349	8793549	+	544.0	f1_balb.idr	intron (NM_175155, intron 4 of 19)	intron (NM_175155, intron 4 of 19)	92621.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-122057176-2	chr10	122057076	122057276	+	963.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2B1|LTR|ERVL	-9861.0	NM_001081037	117600.0	Mm.288698	NM_001081037	ENSMUSG00000020121	Srgap1	4930572H05Rik|Arhgap13	SLIT-ROBO Rho GTPase activating protein 1	protein-coding	-1.06997269762433	-1.30473905204845	-1.3145270772132	-1.32256725251374	-1.06385251204029	-1.30261794616352	-1.3123112828633	-1.32112806497905	0.0394047164033882	0.991001358494878	1
Merged-chr13-23879830-4	chr13	23879737	23879937	+	804.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_121611, intron 8 of 12)	intron (NR_121611, intron 8 of 12)	9564.0	NM_001170638	20504.0	Mm.2656	NM_009198	ENSMUSG00000021335	Slc17a1	NAPI-1|Napi1|Npt1	solute carrier family 17 (sodium phosphate), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-96793464-4	chr5	96793400	96793600	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_013470, exon 1 of 13)	5' UTR (NM_013470, exon 1 of 13)	115.0	NM_013470	11745.0	Mm.7214	NM_013470	ENSMUSG00000029484	Anxa3	Anx3	annexin A3	protein-coding	1.20084154924078	0.841225783657498	1.53026004371414	0.823763905815363	1.2107334913859	1.36363850081272	1.84124533864031	0.825089087104184	1.03914668936704	0.473450034434446	0.926125823511231
Merged-chr13-77135449-4	chr13	77135311	77135511	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145676)	promoter-TSS (NM_001145676)	57.0	NM_134071	105377.0	Mm.209730	NM_134071	ENSMUSG00000021597	Slf1	2700017A04Rik|AW545819|Ankrd32|Brctd1|Brctx|C730024G01Rik	SMC5-SMC6 complex localization factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-135619419-2	chr1	135619319	135619519	+	654.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21643.0	NR_151586	215714.0	Mm.472859	NM_175447		Gm4793	EG215714	predicted gene 4793	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-130952569-2	chr4	130952469	130952669	+	573.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_010769, intron 5 of 7)	intron (NM_010769, intron 5 of 7)	8184.0	NM_010769	17180.0	Mm.271796	NM_010769	ENSMUSG00000040533	Matn1	CMP|Crtm|Mat1|matrilin-1	matrilin 1, cartilage matrix protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-38709697-4	chr15	38709635	38709835	+	893.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18781.0	NR_131206	105463124.0	Mm.432448	NR_131206	ENSMUSG00000115620	Gm45924	Borg	predicted gene, 45924	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27548144-2	chr2	27548044	27548244	+	679.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	32997.0	NM_080848	140858.0	Mm.28265	NM_080848	ENSMUSG00000026917	Wdr5	2410008O07Rik|AA408785|AA960360|Big|Big-3	WD repeat domain 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-155732781-4	chr4	155732661	155732861	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026899, intron 4 of 4)	intron (NM_026899, intron 4 of 4)	-2043.0	NM_001101506	381582.0	Mm.379515	NM_001101506	ENSMUSG00000084845	Tmem240	EG381582|Gm5151	transmembrane protein 240	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-28482056-4	chr13	28481959	28482159	+	853.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045054, intron 7 of 7)	intron (NR_045054, intron 7 of 7)	228814.0	NR_105787	102466635.0		NR_105787	ENSMUSG00000099158	Mir6368	Gm27800|mmu-mir-6368	microRNA 6368	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140623491-1	chr5	140623391	140623591	+	562.0	f0_balb.idr	exon (NM_175274, exon 14 of 14)	exon (NM_175274, exon 14 of 14)	16150.0	NM_008494	16848.0	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-40553804-4	chr12	40553700	40553900	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	107747.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80629540-4	chr7	80629403	80629603	+	787.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173863, intron 3 of 14)	intron (NM_173863, intron 3 of 14)	-6514.0	NR_040343	100504375.0	Mm.322881	NR_040343	ENSMUSG00000084821	Gm15880	-	predicted gene 15880	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70211910-1	chr8	70211810	70212010	+	1000.0	f1_balb.idr	intron (NM_001007570, intron 1 of 7)	CpG	371.0	NM_001007570	73095.0	Mm.185413	NM_001007570	ENSMUSG00000002346	Slc25a42	2900084M01Rik	solute carrier family 25, member 42	protein-coding	2.19169394659392	1.71641233998597	2.39137061853215	1.60920463580446	2.63325726458434	3.61311809648594	2.26444476870566	3.15776769270067	2.02913832644678	0.0138339243752157	0.13740018597172
Merged-chr4-59415516-2	chr4	59415416	59415616	+	889.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163288, intron 3 of 16)	intron (NM_001163288, intron 3 of 16)	23117.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-44831390-3	chr17	44831289	44831489	+	731.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178652, intron 2 of 11)	RMER17C|LTR|ERVK	-16592.0	NR_073392	12393.0	Mm.391013	NM_009820	ENSMUSG00000039153	Runx2	AML3|Cbf|Cbfa-1|Cbfa1|LS3|Osf2|PEBP2aA|Pebp2a1|Pebpa2a	runt related transcription factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-137980864-4	chr3	137980768	137980968	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011932, intron 1 of 8)	intron (NM_011932, intron 1 of 8)	681.0	NM_001310753	26377.0	Mm.254835	NM_011932	ENSMUSG00000028159	Dapp1	Bam32	dual adaptor for phosphotyrosine and 3-phosphoinositides 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-4027422-4	chr15	4027318	4027518	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028266)	promoter-TSS (NR_028266)	-12.0	NR_028266	414066.0	Mm.394461	NR_028266		BC037032	-	cDNA Sequence BC037032	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-109253840-2	chr4	109253740	109253940	+	552.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001285895, exon 9 of 9)	exon (NM_001285895, exon 9 of 9)	18208.0	NM_001033226	108802.0	Mm.318248	NM_001033226	ENSMUSG00000028558	Calr4	4933403L16Rik|AU017583	calreticulin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-107860201-4	chr13	107860124	107860324	+	946.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 2 of 14)	intron (NM_145456, intron 2 of 14)	29840.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-6446770-2	chr2	6446670	6446870	+	811.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	94034.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-63658253-2	chr1	63658153	63658353	+	730.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081658, intron 10 of 14)	intron (NM_001081658, intron 10 of 14)	28674.0	NM_001081658	241073.0	Mm.297680	NM_001081658	ENSMUSG00000069085	Dytn	Gm215	dystrotelin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118483500-4	chr11	118483390	118483590	+	964.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153103, intron 7 of 13)	intron (NR_153103, intron 7 of 13)	6658.0	NM_001359368	217364.0	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-100553672-2	chr6	100553572	100553772	+	556.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26272.0	NR_040525	73395.0	Mm.69413	NR_040525	ENSMUSG00000101553	1700049E22Rik	-	RIKEN cDNA 1700049E22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-146872908-1	chr2	146872808	146873008	+	816.333313	f0_balb.idr	intron (NM_001033298, intron 4 of 13)	intron (NM_001033298, intron 4 of 13)	17019.0	NM_001033298	228730.0	Mm.292352	NM_001033298	ENSMUSG00000074749	Kiz	Gm114|Ncrna00153|Plk1s1	kizuna centrosomal protein	protein-coding	1.01448277453299	1.01552040728141	0.467598917221649	0.451249887657852	0.666771136138006	0.492446723738207	2.53779162336623	0.930460357938241	2.28591150258034	0.124721659397035	0.553113157211875
Merged-chr3-95434304-4	chr3	95434199	95434399	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009709)	promoter-TSS (NM_009709)	-91.0	NM_009709	11863.0	Mm.250265	NM_009709	ENSMUSG00000015522	Arnt	D3Ertd557e|Drnt|ESTM42|Hif1b|W08714|bHLHe2|mKIAA4051	aryl hydrocarbon receptor nuclear translocator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45396416-4	chr7	45396328	45396528	+	886.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009224)	promoter-TSS (NM_009224)	-686.0	NR_126538	20637.0	Mm.216386	NM_009224	ENSMUSG00000063511	Snrnp70	2700022N21Rik|3200002N22Rik|AI325098|R74807|Rnu1p70|Rnulp70|Snrp70|Srnp70|U1-70|U1-70K	small nuclear ribonucleoprotein 70 (U1)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-39938717-2	chr1	39938617	39938817	+	691.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252202, intron 2 of 29)	RLTR17B_Mm|LTR|ERVK	37804.0	NM_008696	26921.0	Mm.491139	NM_008696	ENSMUSG00000026074	Map4k4	9430080K19Rik|AU043147|AU045934|AW046177|HGK|Nik	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-62353658-3	chr4	62353559	62353759	+	655.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355385, intron 1 of 27)	intron (NM_001355385, intron 1 of 27)	6937.0	NM_001355385	338355.0	Mm.357792	NM_001045528	ENSMUSG00000066151	Fkbp15	BB131447|C430014M02Rik|FKBO133|FKBP-133|FKBP-15|FKBP133|mKIAA0674	FK506 binding protein 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-87349897-4	chr3	87349807	87350007	+	984.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-7974.0	NM_009690	11801.0	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	3.99403879574831	3.99163608793121	4.26443137051266	3.48032192832379	4.32082475769306	3.93742361086787	4.65474735418563	5.65773724751607	1.09215530134869	0.0204363314605837	0.181802601326216
Merged-chr11-86963326-2	chr11	86963226	86963426	+	970.5833130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001005341, intron 2 of 4)	intron (NM_001005341, intron 2 of 4)	30436.0	NM_001005341	77864.0	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117909302-4	chr10	117909173	117909373	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F|LTR|ERVL-MaLR	-16186.0	NR_045342	71067.0	Mm.410793	NR_045342	ENSMUSG00000112500	4933411E08Rik	-	RIKEN cDNA 4933411E08 gene	ncRNA	1.68888662106476	2.35174749577846	2.14091845590645	2.83216128916167	1.70152692543722	2.49225775735795	2.00633694323948	2.62056325970763	-0.151258046091	0.864988459433523	0.998431161219273
Merged-chr14-76237586-3	chr14	76237487	76237687	+	759.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13875.0	NR_152108	72893.0	Mm.233565	NR_152108		2900040C04Rik	-	RIKEN cDNA 2900040C04 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-121431087-4	chr1	121430986	121431186	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001025156)	promoter-TSS (NM_001025156)	19.0	NM_029955	70829.0	Mm.25788	NM_027567	ENSMUSG00000026339	Ccdc93	4633402D15Rik|9230102M16Rik	coiled-coil domain containing 93	protein-coding	6.97769103437914	6.58275593946201	6.18246359093733	7.12598511630315	6.93462329212073	6.92563321248059	6.38331191986016	7.30888554127661	0.1686955662527	0.471897157014673	0.926125823511231
Merged-chr3-149395284-4	chr3	149395180	149395380	+	917.44165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	120543.0	NR_040591	381482.0	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-58955763-2	chr11	58955663	58955863	+	689.75	f1_balb.idr|f1_c57bl6.idr	TTS (NM_178218)	TTS (NM_178218)	1078.0	NM_178218	319162.0	Mm.212549	NM_178218	ENSMUSG00000078851	Hist3h2a	-	histone cluster 3, H2a	protein-coding	1.72051075380302	1.57824840822045	0.978492058997603	1.60731741088729	1.28433593172536	0.999418181826164	1.78817309213007	2.00806538546542	0.283161006926777	0.818703139952407	0.998431161219273
Merged-chr14-122645709-1	chr14	122645609	122645809	+	549.0	f0_balb.idr	intron (NR_153443, intron 8 of 24)	intron (NR_153443, intron 8 of 24)	111381.0	NM_144844	110821.0	Mm.23876	NM_144844	ENSMUSG00000041650	Pcca	C79630	propionyl-Coenzyme A carboxylase, alpha polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-43558533-1	chr17	43558433	43558633	+	558.0	f1_balb.idr	Intergenic	Intergenic	-9918.0	NM_013737	27226.0	Mm.9277	NM_013737	ENSMUSG00000023913	Pla2g7	PAF-AH|R75400	phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-176832201-4	chr1	176832033	176832233	+	855.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357390, intron 5 of 18)	intron (NM_001357390, intron 5 of 18)	4000.0	NR_037996	15365.0	Mm.441435	NR_037996		Hmga2-ps1	EG666235|Gm7996|Hmgic-ps1|[y]i-c	high mobility group AT-hook 2, pseudogene 1	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36132221-2	chr1	36132121	36132321	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12092.0	NR_105862	102465540.0		NR_105862	ENSMUSG00000098752	Mir6897	Gm27652|mmu-mir-6897	microRNA 6897	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97704728-2	chr11	97704628	97704828	+	548.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011971, intron 2 of 5)	B3|SINE|B2	1294.0	NM_011971	26446.0	Mm.21874	NM_011971	ENSMUSG00000069744	Psmb3	AL033320|C10-II	proteasome (prosome, macropain) subunit, beta type 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-54927966-3	chr11	54927860	54928060	+	872.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271456, intron 9 of 18)	intron (NM_001271456, intron 9 of 18)	25106.0	NM_008161	14778.0	Mm.200916	NM_008161	ENSMUSG00000018339	Gpx3	AA960521|EGPx|GPx|GSHPx-3|GSHPx-P	glutathione peroxidase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-40766978-2	chr9	40766901	40767101	+	885.5	f0_balb.idr|f1_balb.idr	intron (NM_133733, intron 2 of 6)	LTR37A|LTR|ERV1	-34272.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	2.46812571755457	3.62117118442889	3.31731806811175	1.55283719163128	3.95220419703	4.79429319654544	3.82106547444931	2.78593268543621	1.57644142903572	0.0240702243422344	0.203535542265229
Merged-chr17-24152364-4	chr17	24152254	24152454	+	923.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1432.0	NM_001286662	18607.0	Mm.10504	NM_011062	ENSMUSG00000024122	Pdpk1	Pdk1	3-phosphoinositide dependent protein kinase 1	protein-coding	2.31099908275144	3.54059274888309	3.19135556304325	4.17304480399434	2.18782929074328	2.09308077953568	1.76968320505494	2.83392271703321	-2.08241687745242	0.00616242547030401	0.0779923848024341
Merged-chr7-126801064-2	chr7	126800964	126801164	+	853.3333130000001	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177308)	promoter-TSS (NM_001177308)	-617.0	NM_001177308	11674.0	Mm.275831	NM_007438	ENSMUSG00000030695	Aldoa	Aldo-1|Aldo1	aldolase A, fructose-bisphosphate	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34980142-2	chr17	34980042	34980242	+	777.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_013558)	TTS (NM_013558)	-1712.0	NM_001110101	27756.0	Mm.165735	NM_030597	ENSMUSG00000007050	Lsm2	D17H6S56E-2|D17H6S56E2|Dmapl|Dmpkap|G7b|Sm-X5|SmX5|snRNP	LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-109059729-4	chr9	109059593	109059793	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011637)	promoter-TSS (NM_011637)	30.0	NM_011637	22040.0	Mm.439964	NM_011637	ENSMUSG00000049734	Trex1	AU041952	three prime repair exonuclease 1	protein-coding	2.5545528902067	2.05105983069052	2.92355834886813	1.7562966143194	2.41244718917543	2.06614496358224	2.71027920557637	1.31552376352811	-0.38612746365059	0.680862885392392	0.995813843836398
Merged-chr2-84505227-3	chr2	84505137	84505337	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_046046, intron 1 of 2)	IAPLTR1_Mm|LTR|ERVK	1636.0	NR_046046	672763.0	Mm.491046	NR_046046	ENSMUSG00000087362	Gm13710	-	predicted gene 13710	ncRNA	-2.18292257394068	-2.15545247547656	-2.03304972317742	-2.17058342868585	-2.18099422382073	-2.1536522739386	-2.16187909550322	-2.16936197735154	-0.683654500252594	0.846597994014493	1
Merged-chr11-119091073-4	chr11	119090985	119091185	+	990.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-4848.0	NM_007625	12418.0	Mm.268070	NM_007625	ENSMUSG00000039989	Cbx4	MPc2|PC2	chromobox 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-14816406-3	chr8	14816294	14816494	+	927.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172910, intron 9 of 15)	T-rich|Low_complexity|Low_complexity	-72142.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	2.60088660507056	3.14948695096236	3.39379626807427	3.30224225627398	2.62286456979142	3.17226543414593	3.4191769604561	3.07107087734014	-0.0770567000198743	0.901954730198742	0.998431161219273
Merged-chr8-10031371-2	chr8	10031271	10031471	+	692.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001347309, exon 4 of 6)	exon (NM_001347309, exon 4 of 6)	24738.0	NM_033622	24099.0	Mm.28835	NM_033622	ENSMUSG00000031497	Tnfsf13b	BAFF|BLyS|D8Ertd387e|TALL-1|TALL1|THANK|TNFSF20|Tnlg7a|zTNF4	tumor necrosis factor (ligand) superfamily, member 13b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-61451330-1	chr18	61451230	61451430	+	577.0	f1_c57bl6.idr	Intergenic	Intergenic	33277.0	NR_045419	442846.0	Mm.417648	NR_045419		A530050N04Rik	-	RIKEN cDNA A530050N04 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-146983421-2	chr5	146983321	146983521	+	678.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19566.0	NM_001359467	76366.0	Mm.486234	NM_029581	ENSMUSG00000016510	Mtif3	2810012L14Rik|AI414549	mitochondrial translational initiation factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-23988056-4	chr16	23987991	23988191	+	952.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009744, intron 1 of 9)	CpG	761.0	NM_009744	12053.0	Mm.347398	NM_009744	ENSMUSG00000022508	Bcl6	Bcl5	B cell leukemia/lymphoma 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-34328584-2	chr10	34328484	34328684	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347463, intron 5 of 10)	intron (NM_001347463, intron 5 of 10)	31163.0	NM_030203	72480.0	Mm.21485	NM_030203	ENSMUSG00000039485	Tspyl4	2610102M01Rik|B230210I21Rik|D10Bwg0791e	TSPY-like 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24657296-2	chr17	24657282	24657482	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001099664)	TTS (NM_001099664)	1043.0	NM_001099664	381073.0	Mm.291772	NM_001099664	ENSMUSG00000071230	Npw	Gm935	neuropeptide W	protein-coding	0.591997097039451	0.623175414228414	1.22435612046099	1.1810842256212	0.892344270392704	0.625441165881675	1.11420816022294	1.38576027140299	0.427170965072056	0.785944782567324	0.998431161219273
Merged-chr2-132243531-2	chr2	132243431	132243631	+	701.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027478, intron 3 of 3)	intron (NM_027478, intron 3 of 3)	4257.0	NM_027478	70612.0	Mm.30116	NM_027478	ENSMUSG00000027341	Tmem230	5730494N06Rik|AA407821	transmembrane protein 230	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-152479080-6	chr3	152478961	152479161	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081277, intron 11 of 13)	intron (NM_001081277, intron 11 of 13)	82377.0	NM_001287139	108946.0	Mm.379292	NM_198416	ENSMUSG00000039068	Zzz3	3110065C23Rik|6430567E01Rik|AA408566|AI481057|AW556059|R75514	zinc finger, ZZ domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-140036558-6	chr7	140036436	140036636	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133755)	promoter-TSS (NM_133755)	138.0	NM_001286007	74237.0	Mm.40888	NM_133755	ENSMUSG00000025474	Tubgcp2	1700022B05Rik	tubulin, gamma complex associated protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-46339916-1	chr17	46339816	46340016	+	573.0	f1_c57bl6.idr	Intergenic	ID4_|SINE|ID	-11893.0	NM_170680	224814.0	Mm.76543	NM_145140	ENSMUSG00000032842	Abcc10	Mrp7|mFLJ00002	ATP-binding cassette, sub-family C (CFTR/MRP), member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5365927-2	chr19	5365827	5366027	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027236)	promoter-TSS (NM_027236)	436.0	NM_001038231	23825.0	Mm.358649	NM_011793	ENSMUSG00000024844	Banf1	Baf|Bcrp1|L2bp1/Baf	barrier to autointegration factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53073223-2	chr4	53073123	53073323	+	734.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 23 of 49)	intron (NM_013454, intron 23 of 49)	61343.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-34571103-4	chr19	34570941	34571141	+	728.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008332, intron 2 of 2)	RMER17C|LTR|ERVK	-12488.0	NM_010501	15959.0	Mm.426079	NM_010501	ENSMUSG00000074896	Ifit3	Ifi49|P49	interferon-induced protein with tetratricopeptide repeats 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-107832970-4	chr13	107832865	107833065	+	972.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 2 of 14)	ORR1B2|LTR|ERVL-MaLR	57099.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	4.10528319362582	3.52135519501178	3.79356673350184	3.98355840912949	2.96776538959979	2.62105203357186	3.9497137955671	3.32264272433392	-0.839424524064149	0.127701148466775	0.559030175729842
Merged-chr11-31924175-2	chr11	31924075	31924275	+	938.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026252, intron 5 of 9)	intron (NM_026252, intron 5 of 9)	-41458.0	NM_026262	67592.0	Mm.78654	NM_026262	ENSMUSG00000020299	4930524B15Rik	-	RIKEN cDNA 4930524B15 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-60451810-4	chr14	60451708	60451908	+	744.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	73522.0	NM_001164705	72125.0	Mm.275499	NM_028113	ENSMUSG00000021986	Amer2	2600011E07Rik|Fam123a	APC membrane recruitment 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127577098-2	chr10	127576998	127577198	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 22 of 88)	intron (NM_008512, intron 22 of 88)	-42539.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-18407038-2	chr10	18406936	18407136	+	628.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173390)	promoter-TSS (NM_173390)	-639.0	NM_173390	215819.0	Mm.297971	NM_173390	ENSMUSG00000039835	Nhsl1	5730409E15Rik|A630035H13Rik|A730096F01|BC013565|D10Bwg0940e|mKIAA1357	NHS-like 1	protein-coding	-1.53362919331644	-1.50201671710775	-1.51157659084044	-1.08120497225282	-1.53141005593807	-1.49994505258991	-1.50941244497383	-1.51802371459528	-1.94474658522739	0.577200604274218	1
Merged-chr10-68132231-3	chr10	68132070	68132270	+	732.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023598, intron 5 of 9)	intron (NM_023598, intron 5 of 9)	146556.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43053881-1	chr4	43053781	43053981	+	1000.0	f1_balb.idr	Intergenic	B2_Mm1a|SINE|B2	-5072.0	NM_021468	22249.0	Mm.128892	NM_021468	ENSMUSG00000028456	Unc13b	Munc13-1|Munc13-2|Unc13a|Unc13h1|Unc13h2	unc-13 homolog B (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-30065745-2	chr16	30065645	30065845	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008235, intron 1 of 3)	intron (NM_008235, intron 1 of 3)	388.0	NM_008235	15205.0	Mm.390859	NM_008235	ENSMUSG00000022528	Hes1	Hry|bHLHb39	hes family bHLH transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-62051566-3	chr1	62051435	62051635	+	938.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081050, intron 3 of 22)	intron (NM_001081050, intron 3 of 22)	84574.0	NR_151537	105243940.0		NR_151537		Pard3bos2	Gm12747	par-3 family cell polarity regulator beta, opposite strand 2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117354899-2	chr8	117354799	117354999	+	615.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028941, intron 1 of 20)	intron (NM_028941, intron 1 of 20)	5729.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-120516273-4	chr5	120516180	120516380	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177595, intron 2 of 13)	intron (NM_001177595, intron 2 of 13)	5088.0	NM_001177594	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123280533-3	chr5	123280447	123280647	+	744.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52357.0	NM_026000	67151.0	Mm.278997	NM_026000	ENSMUSG00000029440	Psmd9	1500011J20Rik|2610202L11Rik|Bridge-1|P27	proteasome (prosome, macropain) 26S subunit, non-ATPase, 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27048705-2	chr17	27048605	27048805	+	640.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8599.0	NM_080553	16440.0	Mm.458106	NM_080553	ENSMUSG00000042644	Itpr3	IP3R 3|Ip3r3|Itpr-3|tf	inositol 1,4,5-triphosphate receptor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70414071-2	chr11	70413971	70414171	+	835.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4040.0	NM_029231	75273.0	Mm.340601	NM_029231	ENSMUSG00000018921	Pelp1	4930563C04Rik|MNAR	proline, glutamic acid and leucine rich protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107624744-4	chr9	107624638	107624838	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008138, intron 1 of 8)	intron (NM_008138, intron 1 of 8)	10604.0	NM_008138	14678.0	Mm.196464	NM_008138	ENSMUSG00000032562	Gnai2	C76432|Galphai2|Gia|Gnai-2	guanine nucleotide binding protein (G protein), alpha inhibiting 2	protein-coding	5.23278978279145	5.19817024461809	5.74786635581503	4.55372225283294	4.16658995730269	4.41298769948161	4.0557353645182	4.90582351511774	-0.990465998479347	0.00900493917271791	0.101036091204117
Merged-chr11-23149966-2	chr11	23149866	23150066	+	739.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2174.0	NR_131065	76993.0	Mm.59224	NR_131065	ENSMUSG00000086366	1700061J23Rik	-	RIKEN cDNA 1700061J23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-97329807-2	chr7	97329654	97329854	+	590.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2569.0	NM_001039039	622320.0	Mm.334029	NM_001039039	ENSMUSG00000044952	Kctd21	EG622320	potassium channel tetramerisation domain containing 21	protein-coding	-1.31349849087795	-1.28274354783242	-1.29349452597086	-1.3023256995151	-1.3130151546297	-1.28041376602105	-0.694015972326031	-1.30074492367298	2.57396649482007	0.456321314346772	1
Merged-chr2-35327924-2	chr2	35327824	35328024	+	622.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013515, intron 1 of 6)	HAL1|LINE|L1	9085.0	NM_013515	13830.0	Mm.295284	NM_013515	ENSMUSG00000026880	Stom	Epb7.2	stomatin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-133481159-3	chr2	133481059	133481259	+	796.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-71000.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-137644690-2	chr5	137644590	137644790	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_010571, exon 2 of 2)	exon (NM_010571, exon 2 of 2)	1024.0	NM_010571	16369.0	Mm.24486	NM_010571	ENSMUSG00000047182	Irs3	AA408304	insulin receptor substrate 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5457546-4	chr19	5457433	5457633	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001243307)	promoter-TSS (NM_001243307)	30.0	NM_198616	240514.0	Mm.329657	NM_198616	ENSMUSG00000095098	Ccdc85b	AI842788|BB115872	coiled-coil domain containing 85B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-85282609-1	chr1	85282509	85282709	+	653.0	f1_balb.idr	Intergenic	Intergenic	-12043.0	NM_001037909	620078.0	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik	RIKEN cDNA C130026I21 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-88105577-2	chr8	88105477	88105677	+	634.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_151771, intron 2 of 7)	intron (NR_151771, intron 2 of 7)	13030.0	NR_151771	100040328.0	Mm.56398	NR_151771		Gm2716	4933416k23	predicted gene 2716	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-9826053-4	chr1	9825935	9826135	+	976.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177547, intron 1 of 16)	intron (NM_177547, intron 1 of 16)	-22246.0	NM_001037759	170755.0	Mm.336410	NM_133220	ENSMUSG00000025915	Sgk3	2510015P22Rik|A330005P07Rik|Cisk|fy|fz	serum/glucocorticoid regulated kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-85113659-4	chr15	85113557	85113757	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080470, intron 9 of 24)	intron (NM_080470, intron 9 of 24)	18300.0	NM_080470	140557.0	Mm.182737	NM_080470	ENSMUSG00000022432	Smc1b	SMC-1B|SMC1beta|Smc1l2	structural maintenance of chromosomes 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-38854470-3	chr12	38854373	38854573	+	995.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347379, intron 9 of 11)	intron (NM_001347379, intron 9 of 11)	70762.0	NM_001163154	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-156841945-2	chr1	156841854	156842054	+	949.333374	f0_balb.idr|f1_balb.idr	intron (NM_028333, intron 1 of 4)	intron (NM_028333, intron 1 of 4)	2931.0	NM_028333	72713.0	Mm.389206	NM_028333	ENSMUSG00000033544	Angptl1	2810039D03Rik|ANG3|ANGPT3|ANGY|ARP1	angiopoietin-like 1	protein-coding	1.37989875292779	1.33463885636005	1.29123277574889	1.01106327588247	2.83813535529048	1.91724869765	1.69256620420348	2.31749545567515	3.11857709286755	0.00620601500643562	0.0784337444317569
Merged-chr15-97948255-2	chr15	97948155	97948355	+	677.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15974.0	NM_001356508	380967.0	Mm.196630	NM_201359	ENSMUSG00000052369	Tmem106c	AI046681|BC046621|D15Ertd405e	transmembrane protein 106C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-83308152-2	chr4	83308052	83308252	+	598.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027238, intron 1 of 19)	ORR1G|LTR|ERVL-MaLR	16037.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-136556340-1	chr6	136556240	136556440	+	596.0	f1_balb.idr	intron (NM_019426, intron 1 of 14)	intron (NM_019426, intron 1 of 14)	37489.0	NM_019426	54343.0	Mm.173271	NM_019426	ENSMUSG00000030213	Atf7ip	2610204M12Rik|AM|Mcaf1	activating transcription factor 7 interacting protein	protein-coding	1.03752214810952	1.35200689007298	0.580270361882906	0.568840817176625	1.04873576077081	1.97120434026313	0.583496283089887	0.787957453054754	1.13399142223802	0.457117406297635	0.919371384099387
Merged-chr15-99074375-2	chr15	99074275	99074475	+	745.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030159)	promoter-TSS (NM_030159)	294.0	NR_155351	102637490.0	Mm.421289	NR_155351	ENSMUSG00000116371	Gm34284	-	predicted gene, 34284	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-35634112-4	chr8	35634031	35634231	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081279, intron 1 of 2)	intron (NM_001081279, intron 1 of 2)	-45111.0	NR_040376	100504714.0	Mm.381744	NR_040376	ENSMUSG00000097357	Gm16793	-	predicted gene, 16793	ncRNA	5.48831516788267	5.33112306889307	4.73370196032902	5.3763368916398	5.20472706243753	4.33161328259307	5.27687635996568	5.42589757261748	-0.161204386425942	0.628299812560122	0.980958768686087
Merged-chr2-83929626-3	chr2	83929482	83929682	+	650.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027964, intron 3 of 8)	ORR1C2|LTR|ERVL-MaLR	11644.0	NM_027964	71861.0	Mm.116957	NM_027964	ENSMUSG00000034552	Zswim2	1700025P14Rik|4933437F18Rik|MEX	zinc finger SWIM-type containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34004209-1	chr17	34004109	34004309	+	617.0	f1_balb.idr	Intergenic	MT2B1|LTR|ERVL	-3862.0	NM_001347346	14972.0	Mm.422886	NM_001001892	ENSMUSG00000061232	H2-K1	H-2K|H-2K(d)|H2-K|K-f	histocompatibility 2, K1, K region	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64683535-3	chr5	64683439	64683639	+	640.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72840.0	NR_045078	100042198.0	Mm.25191	NR_045078	ENSMUSG00000105402	Gm3716	Gm1683	predicted gene 3716	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-135296539-4	chr6	135296436	135296636	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13848.0	NM_029595	76400.0	Mm.293018	NM_029595	ENSMUSG00000047104	Pbp2	1700023A18Rik|AI326308|Pebp-2|Pebp2	phosphatidylethanolamine binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69033167-2	chr11	69033067	69033267	+	596.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001281465, intron 15 of 22)	intron (NM_001281465, intron 15 of 22)	-12470.0	NM_011496	20877.0	Mm.3488	NM_011496	ENSMUSG00000020897	Aurkb	AIM-1|AIRK2|AL022959|Aik2|Aim1|Ark2|AurB|IPL1|STK-1|Stk12|Stk5	aurora kinase B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120582817-3	chr11	120582703	120582903	+	808.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1183.0	NM_133796	192662.0	Mm.30016	NM_133796	ENSMUSG00000025132	Arhgdia	5330430M07Rik|Gdi-1|Rho-GDI|RhoDGI|RhoGDI-1	Rho GDP dissociation inhibitor (GDI) alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-92711795-2	chr7	92711694	92711894	+	760.5	f0_c57.idr|f1_c57bl6.idr	Intergenic	L1M5|LINE|L1	29665.0	NR_015510	666737.0	Mm.473620	NR_015510	ENSMUSG00000074024	4632427E13Rik	AU015482	RIKEN cDNA 4632427E13 gene	ncRNA	2.91899704363493	4.07411495225708	3.25562724494217	3.16243538328354	2.57056813179839	2.08872440378897	2.39082826583957	1.42598583026634	-2.26017375904616	0.00280729342758873	0.0432558731304061
Merged-chr7-143045513-3	chr7	143045418	143045618	+	857.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110355, intron 1 of 4)	intron (NR_110355, intron 1 of 4)	-7232.0	NM_133655	12520.0	Mm.806	NM_133655	ENSMUSG00000037706	Cd81	Tapa-1|Tapa1|Tspan28	CD81 antigen	protein-coding	0.0390446946883444	0.241745158043424	0.0497251919215467	0.561494969051882	0.592329011337422	0.405058467911706	0.0508753239986282	0.0464073904051829	0.397846662873566	0.850054139165238	1
Merged-chr13-41883894-4	chr13	41883836	41884036	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033545, exon 2 of 7)	non-coding (NR_033545, exon 2 of 7)	18021.0	NR_033545	100038577.0	Mm.387093	NR_033545	ENSMUSG00000113856	Gm10790	-	predicted gene 10790	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-102693925-2	chr15	102693825	102694025	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22059.0	NR_030460	751542.0		NR_030460	ENSMUSG00000076009	Mir688	Mirn688|mmu-mir-688	microRNA 688	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-73096714-4	chr17	73096610	73096810	+	850.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-11275.0	NM_001177968	225010.0	Mm.329194	NM_001081071	ENSMUSG00000054469	Lclat1	AI181996|Agpat8|Alcat1|Gm91|Lycat	lysocardiolipin acyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-81053770-3	chr13	81053666	81053866	+	691.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015587, intron 1 of 1)	intron (NR_015587, intron 1 of 1)	89692.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-108361883-2	chr9	108361783	108361983	+	818.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011678, intron 4 of 21)	intron (NM_011678, intron 4 of 21)	14052.0	NM_011678	22258.0	Mm.3974	NM_011678	ENSMUSG00000032612	Usp4	F730026I20Rik|Unp|mKIAA4155	ubiquitin specific peptidase 4 (proto-oncogene)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-51378258-2	chr3	51378158	51378358	+	691.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME1|LINE|L1	18289.0	NR_028121	67749.0	Mm.273339	NM_026358	ENSMUSG00000037161	Mgarp	4930583H14Rik|AI195347|CESP-1|HUMMR|Osap|Qsap	mitochondria localized glutamic acid rich protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-128078885-4	chr8	128078791	128078991	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	199334.0	NR_105822	102465212.0		NR_105822	ENSMUSG00000099326	Mir21c	Gm28013|mmu-mir-21c	microRNA 21c	ncRNA	2.17561699335284	1.93065995686422	3.10649641674464	1.28616428296949	2.43575281118815	1.69492489479325	3.81635431237958	3.03209862289001	1.2384578514404	0.17692130536163	0.646570188136342
Merged-chr18-4366507-2	chr18	4366407	4366607	+	910.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_040328, intron 2 of 3)	intron (NR_040328, intron 2 of 3)	-9085.0	NM_001361008	67440.0	Mm.49826	NM_026157	ENSMUSG00000024234	Mtpap	0610027A18Rik|AW551379|Papd1	mitochondrial poly(A) polymerase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-79761740-4	chr1	79761652	79761852	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001111279)	promoter-TSS (NM_001111279)	17.0	NM_001111279	69368.0	Mm.293273	NM_027057	ENSMUSG00000073643	Wdfy1	1700013B03Rik|1700120F24Rik|FENS-1|Jr1|WDF1|ZFYVE17|mKIAA1435	WD repeat and FYVE domain containing 1	protein-coding	4.88309753575159	3.8869934680078	4.44320267768554	4.47564261818319	4.38341070676701	5.47558360734791	4.47616004677489	4.79563246996408	0.456859071371638	0.258317368167875	0.758397705974887
Merged-chr15-8382466-4	chr15	8382392	8382592	+	998.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201232, intron 1 of 45)	intron (NM_201232, intron 1 of 45)	61971.0	NM_027707	71175.0	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	NIPBL cohesin loading factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-74964427-3	chr5	74964340	74964540	+	922.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045866, intron 4 of 4)	intron (NR_045866, intron 4 of 4)	15246.0	NR_045866	619945.0	Mm.359372	NM_001037908	ENSMUSG00000072874	Gm6116	EG619945	predicted gene 6116	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-59155557-4	chr2	59155447	59155647	+	880.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362394, intron 1 of 13)	Lx4A|LINE|L1	5136.0	NM_001362393	227933.0	Mm.330234	NM_177650	ENSMUSG00000036641	Ccdc148	5830402J09|Gm38473	coiled-coil domain containing 148	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-35535261-4	chr9	35535161	35535361	+	927.2291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	23209.0	NM_013932	30959.0	Mm.291723	NM_013932	ENSMUSG00000032101	Ddx25	AW047046|GRTH	DEAD (Asp-Glu-Ala-Asp) box polypeptide 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36613243-1	chr1	36613143	36613343	+	581.0	f0_balb.idr	intron (NM_201365, intron 6 of 9)	ID4_|SINE|ID	-19911.0	NM_027957	381337.0	Mm.17413	NM_027957	ENSMUSG00000046337	Fam178b	1700024G10Rik|Gm990	family with sequence similarity 178, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-121113444-4	chr8	121113332	121113532	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2739.0	NM_013519	14234.0	Mm.14092	NM_013519	ENSMUSG00000046714	Foxc2	Fkh14|Hfhbf3|MFH-1|Mfh1	forkhead box C2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-170206492-1	chr2	170206392	170206592	+	646.0	f0_balb.idr	Intergenic	Intergenic	-63817.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100964370-4	chr7	100964277	100964477	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183168)	promoter-TSS (NM_183168)	-11.0	NM_183168	233571.0	Mm.235193	NM_183168	ENSMUSG00000048779	P2ry6	2010204J23Rik|P2Y6	pyrimidinergic receptor P2Y, G-protein coupled, 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-63137562-2	chr14	63137462	63137662	+	975.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007798, intron 5 of 9)	Tigger7|DNA|TcMar-Tigger	15100.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-61211918-4	chr10	61211803	61212003	+	842.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081127, intron 14 of 21)	intron (NM_001081127, intron 14 of 21)	36641.0	NM_023064	65971.0	Mm.30227	NM_023064	ENSMUSG00000020096	Tbata	1700021K02Rik|AI428928|Spatial|Titest	thymus, brain and testes associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-120251387-1	chr1	120251287	120251487	+	701.0	f0_balb.idr	intron (NM_001085409, intron 2 of 5)	intron (NM_001085409, intron 2 of 5)	13893.0	NM_133186	68428.0	Mm.181033	NM_133186	ENSMUSG00000026389	Steap3	1010001D01Rik|Tsap6|pHyde	STEAP family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-17235577-2	chr12	17235477	17235677	+	686.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-31018.0	NM_027959	71853.0	Mm.222825	NM_027959	ENSMUSG00000020571	Pdia6	1700015E05Rik|AL023058|C77895|CaBP5|P5|Txndc7	protein disulfide isomerase associated 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-94537823-2	chr8	94537723	94537923	+	566.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153507, intron 1 of 15)	intron (NM_153507, intron 1 of 15)	4795.0	NM_153507	234577.0	Mm.291815	NM_153507	ENSMUSG00000034361	Cpne2	3322401K10Rik	copine II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111930932-2	chr12	111930832	111931032	+	993.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13550.0	NR_029464	77675.0	Mm.98331	NR_029464	ENSMUSG00000113769	5033406O09Rik	9130204G15Rik	RIKEN cDNA 5033406O09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-121413125-3	chr2	121413017	121413217	+	826.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007952)	promoter-TSS (NM_007952)	675.0	NM_153075	212670.0	Mm.384318	NM_153075	ENSMUSG00000033486	Catsper2	-	cation channel, sperm associated 2	protein-coding	1.18299927538064	2.76742738046889	0.740690269003632	0.424304748156138	0.395523023450443	0.791728872604141	0.990609759613516	0.427737546308195	-3.10845258065776	0.0387615711229753	0.280608204143277
Merged-chr2-130274366-4	chr2	130274246	130274446	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024193)	promoter-TSS (NM_024193)	-66.0	NM_024193	67134.0	Mm.29363	NM_024193	ENSMUSG00000027405	Nop56	2310044F10Rik|Nol5a	NOP56 ribonucleoprotein	protein-coding	6.45261412418484	5.74464438038622	5.6345468300144	5.78754716167072	6.01930175248447	6.34781109096101	5.96162201858367	6.0135329249063	0.14898355065238	0.557819135005137	0.960321604678676
Merged-chr11-77827538-2	chr11	77827438	77827638	+	824.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001291212, exon 16 of 41)	exon (NM_001291212, exon 16 of 41)	26240.0	NM_001291215	360013.0	Mm.341248	NM_011586	ENSMUSG00000000631	Myo18a	MAJN|MyoPDZ|MysPDZ|SP-R210	myosin XVIIIA	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-85360768-2	chr9	85360668	85360868	+	619.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33618.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-97239713-4	chr13	97239606	97239806	+	917.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1399.0	NM_007930	13803.0	Mm.241073	NM_007930	ENSMUSG00000041773	Enc1	Nrpb|PIG10	ectodermal-neural cortex 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-63904776-2	chr7	63904676	63904876	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021366, intron 1 of 1)	L1MC3|LINE|L1	-12081.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-40459108-4	chr12	40459015	40459215	+	906.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	13062.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-21189210-4	chr5	21189105	21189305	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153365, intron 1 of 26)	intron (NR_153365, intron 1 of 26)	2938.0	NM_001359877	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-129471579-4	chr6	129471469	129471669	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020008, intron 1 of 5)	intron (NM_020008, intron 1 of 5)	1210.0	NM_001309637	56644.0	Mm.239516	NM_020008	ENSMUSG00000079293	Clec7a	BGR|Clecsf12|beta-GR	C-type lectin domain family 7, member a	protein-coding	4.59176691230927	4.96935827425668	3.74996568705269	4.92053636720605	4.69786065418776	4.38322520278557	4.17438541290443	5.42321573527507	0.159348793812122	0.706289881724877	0.998431161219273
Merged-chr6-124662936-4	chr6	124662813	124663013	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145130)	promoter-TSS (NM_145130)	-191.0	NR_149320	14792.0	Mm.273915	NM_145130	ENSMUSG00000004270	Lpcat3	C3f|Grcc3f|Lpcat|Lpeat|Lplat5|Lpsat|Mboat5|Moact5|Oact5|PTG	lysophosphatidylcholine acyltransferase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70230528-4	chr11	70230424	70230624	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007528)	promoter-TSS (NM_007528)	-726.0	NM_007528	12029.0	Mm.12930	NM_007528	ENSMUSG00000000317	Bcl6b	Bazf	B cell CLL/lymphoma 6, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-12373743-4	chr15	12373644	12373844	+	991.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081064, exon 19 of 24)	exon (NM_001081064, exon 19 of 24)	52248.0	NM_025673	66629.0	Mm.157655	NM_025673	ENSMUSG00000022200	Golph3	4733401N08Rik|5730410D03Rik|AW413496	golgi phosphoprotein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-86887043-4	chr10	86886919	86887119	+	975.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138673, intron 42 of 68)	intron (NM_138673, intron 42 of 68)	108014.0	NM_175331	103466.0	Mm.200446	NM_175331	ENSMUSG00000054027	Nt5dc3	AU040402|AW540062|C630002B14Rik|TU12B1-TY	5'-nucleotidase domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-35374290-1	chr8	35374190	35374390	+	615.0	f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-1451.0	NM_177741	244416.0	Mm.247126	NM_177741	ENSMUSG00000046794	Ppp1r3b	6430576E21|AW821953|GL|PTG	protein phosphatase 1, regulatory (inhibitor) subunit 3B	protein-coding	0.317218973189546	-0.468181840924574	-0.472323057355108	-0.475520160557193	-0.0878244561287446	-0.467248756178452	-0.471409427907089	-0.474961504318558	-1.33792653694403	0.62652658069842	1
Merged-chr3-144696734-4	chr3	144696645	144696845	+	913.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001282037, intron 9 of 10)	intron (NM_001282037, intron 9 of 10)	23590.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-27623746-2	chr8	27623646	27623846	+	557.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR26B_MM|LTR|ERVK	176076.0	NM_027618	70952.0	Mm.158160	NM_026256	ENSMUSG00000063932	Poteg	4921537P18Rik|4930456F22Rik|Gsarp1|Gsarp2	POTE ankyrin domain family, member G	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-96699771-4	chr15	96699670	96699870	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175121)	promoter-TSS (NM_175121)	-42.0	NM_175121	67760.0	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-8095563-4	chr14	8095469	8095669	+	976.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2642.0	NM_145458	218699.0	Mm.29515	NM_145458	ENSMUSG00000033885	Pxk	C230080L11Rik|D14Ertd813e|Monaka|Slob	PX domain containing serine/threonine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-17408045-4	chr10	17407943	17408143	+	996.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-312261.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-86952014-1	chr15	86951914	86952114	+	991.0	f1_c57bl6.idr	Intergenic	B4|SINE|B4	-592285.0	NM_001252310	106014.0	Mm.244319	NM_134096	ENSMUSG00000054863	Fam19a5	TAFA5|Tafa-5|Tara-5	family with sequence similarity 19, member A5	protein-coding	-0.548148127287174	-0.534994719662482	0.263484604031121	-0.542612953676498	-0.547323257953237	-0.150462351890654	-0.53834130381974	-0.542031808161518	-1.50711037112802	0.587523960093481	1
Merged-chr7-28362873-2	chr7	28362773	28362973	+	622.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001083912, exon 17 of 19)	exon (NM_001083912, exon 17 of 19)	9789.0	NM_138752	101497.0	Mm.235700	NM_138752	ENSMUSG00000037552	Plekhg2	AI194308|Clg|Cslg	pleckstrin homology domain containing, family G (with RhoGef domain) member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-21738112-2	chr5	21738012	21738212	+	725.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028431, intron 1 of 12)	(CAGA)n|Simple_repeat|Simple_repeat	952.0	NM_028431	73078.0	Mm.301655	NM_028431	ENSMUSG00000029017	Pmpcb	3110004O18Rik|MPP11|MPPB|MPPP52	peptidase (mitochondrial processing) beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128177562-2	chr10	128177462	128177662	+	793.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019711)	promoter-TSS (NM_019711)	-994.0	NM_019711	56516.0	Mm.42247	NM_019711	ENSMUSG00000040043	Rbms2	2610315E04Rik|Scr3	RNA binding motif, single stranded interacting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-120506671-2	chr5	120506571	120506771	+	707.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3048.0	NM_023625	71772.0	Mm.100065	NM_023625	ENSMUSG00000029598	Plbd2	1300012G16Rik|AU019810|P76	phospholipase B domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-20708961-2	chr16	20708861	20709061	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009900, intron 15 of 23)	intron (NM_009900, intron 15 of 23)	7675.0	NM_009900	12724.0	Mm.177761	NM_009900	ENSMUSG00000022843	Clcn2	AL118368|ClC-2|Clc2|nmf240	chloride channel, voltage-sensitive 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47923717-4	chr17	47923622	47923822	+	970.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028767, intron 1 of 16)	CpG	910.0	NM_028767	74123.0	Mm.240062	NM_028767	ENSMUSG00000023991	Foxp4	1200010K03Rik|2310007G05Rik|mFKHLA	forkhead box P4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-117835703-1	chr4	117835603	117835803	+	573.0	f1_balb.idr	intron (NM_008135, intron 1 of 13)	CpG	445.0	NM_008135	14664.0	Mm.244549	NM_008135	ENSMUSG00000028542	Slc6a9	Glyt-1|Glyt1	solute carrier family 6 (neurotransmitter transporter, glycine), member 9	protein-coding	1.23978480026569	0.481886543415946	0.4722605542919	0.648750770715754	0.619192364577807	1.27946587120172	1.10832821906005	0.46607714128142	0.726854216124916	0.664013172628108	1
Merged-chr12-52383141-4	chr12	52383024	52383224	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(GGGTG)n|Simple_repeat|Simple_repeat	97485.0	NR_136881	102638611.0	Mm.363799	NR_136881	ENSMUSG00000111982	Gm35135	-	predicted gene, 35135	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-58980782-2	chr15	58980682	58980882	+	910.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144800, intron 3 of 14)	intron (NM_144800, intron 3 of 14)	46972.0	NM_023172	66218.0	Mm.322294	NM_023172	ENSMUSG00000022354	Ndufb9	1190008J14Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-62574418-3	chr11	62574332	62574532	+	887.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011706)	promoter-TSS (NM_011706)	-54.0	NM_011706	22368.0	Mm.288064	NM_011706	ENSMUSG00000018507	Trpv2	GRC|OTRPC2|VRL-1|Vrl1	transient receptor potential cation channel, subfamily V, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-80801511-4	chr17	80801404	80801604	+	890.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73479.0	NM_001290345	225028.0	Mm.311948	NM_001081357	ENSMUSG00000024242	Map4k3	4833416M01Rik|4833416M07Rik|9530052P13Rik|Glk|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1	mitogen-activated protein kinase kinase kinase kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-41931417-2	chr17	41931317	41931517	+	801.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4A|LINE|L1	-384530.0	NM_028474	627626.0	Mm.390999	NM_028474	ENSMUSG00000042256	Ptchd4	3110082D06Rik|Gm321	patched domain containing 4	protein-coding	-0.232748228794272	-0.603860863971285	-0.60758690818963	-0.610461606700171	-0.614523794090807	-0.603020958349874	0.0867520977167229	-0.609959408815613	1.13245091000738	0.691588786158326	1
Merged-chr10-116560701-2	chr10	116560601	116560801	+	748.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359563, intron 1 of 13)	intron (NM_001359563, intron 1 of 13)	19835.0	NM_001359250	72068.0	Mm.351553	NM_028082	ENSMUSG00000020166	Cnot2	2600016M12Rik|2810470K03Rik|AA537049|AA959607|AW557563|C79650	CCR4-NOT transcription complex, subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-50130911-4	chr11	50130806	50131006	+	986.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290759)	promoter-TSS (NM_001290759)	-454.0	NM_001290759	76795.0	Mm.290975	NM_029745	ENSMUSG00000036644	Tbc1d9b	-	TBC1 domain family, member 9B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-34064079-4	chr13	34063902	34064102	+	854.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026512, exon 6 of 7)	exon (NM_026512, exon 6 of 7)	14006.0	NM_009450	22151.0	Mm.422827	NM_009450	ENSMUSG00000058672	Tubb2a	M(beta)2|Tubb2	tubulin, beta 2A class IIA	protein-coding	-1.02025144102781	-1.25489908136126	-1.26489059703642	-1.27309792550096	-1.13773022307635	-1.25273387823386	-1.10541658147931	-1.27162881762983	0.11056628894859	0.972301396537896	1
Merged-chr13-112532257-1	chr13	112532157	112532357	+	659.0	f1_c57bl6.idr	intron (NM_139299, intron 12 of 16)	intron (NM_139299, intron 12 of 16)	48405.0	NM_139299	218624.0	Mm.380801	NM_139299	ENSMUSG00000050377	Il31ra	CRL3|GLM-R|GPL|Glmr|NR10	interleukin 31 receptor A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-75775897-4	chr2	75775795	75775995	+	958.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56282.0	NM_172666	228061.0	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-26127584-3	chr11	26127504	26127704	+	637.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027973, intron 1 of 5)	L2a|LINE|L2	-74636.0	NR_105791	102466154.0		NR_105791	ENSMUSG00000099015	Mir6372	Gm27358|mmu-mir-6372	microRNA 6372	ncRNA	0.497980804752068	0.047384901168739	0.0419145927624321	0.564861756413088	0.676978381314707	0.0486181962607727	0.0431209988648304	0.0384319700051284	-0.486299122623589	0.827342334914949	1
Merged-chr18-37741966-1	chr18	37741866	37742066	+	593.0	f0_c57.idr	promoter-TSS (NM_033578)	promoter-TSS (NM_033578)	-128.0	NM_033578	93703.0	Mm.247203	NM_033578	ENSMUSG00000103088	Pcdhgb6	-	protocadherin gamma subfamily B, 6	protein-coding	2.50405488566425	2.16916533443938	1.92326198418016	3.020687289766	2.09753693474618	2.18456911153171	2.63400237088091	2.89761685749763	0.0329845280027739	0.967896931409122	0.998431161219273
Merged-chr11-82566268-4	chr11	82566181	82566381	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-67072.0	NR_033582	791422.0	Mm.341562	NR_033582	ENSMUSG00000069796	Gm11426	-	predicted gene 11426	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-61886194-2	chr9	61886094	61886294	+	674.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28316.0	NM_018853	56040.0	Mm.3158	NM_018853	ENSMUSG00000007892	Rplp1	2410042H16Rik|Arpp1|C430017H15Rik	ribosomal protein, large, P1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-95032707-2	chr13	95032607	95032807	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172263, intron 17 of 19)	intron (NM_172263, intron 17 of 19)	56363.0	NM_172590	218460.0	Mm.33856	NM_172590	ENSMUSG00000042015	Wdr41	B830029I03Rik|MSTP048	WD repeat domain 41	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-11581423-2	chr19	11581346	11581546	+	671.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23358.0	NM_026835	68774.0	Mm.290390	NM_026835	ENSMUSG00000024679	Ms4a6d	1110058E16Rik|AI447446|Ms4a11	membrane-spanning 4-domains, subfamily A, member 6D	protein-coding	1.08876646519549	1.69364926229336	0.941189207951461	1.13471039978216	2.02620334674892	1.20285562297636	1.76550556409719	1.80891900863109	1.73478682462051	0.155470534666296	0.610928767307068
Merged-chr3-38482794-2	chr3	38482694	38482894	+	552.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001167883, exon 2 of 4)	exon (NM_001167883, exon 2 of 4)	2022.0	NM_001167883	99696.0	Mm.290937	NM_001033198	ENSMUSG00000044864	Ankrd50	AI662170|E430012K20Rik|mKIAA1223|mKIAA3019	ankyrin repeat domain 50	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-97110839-3	chr15	97110737	97110937	+	765.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54881.0	NM_027052	69354.0	Mm.250980	NM_027052	ENSMUSG00000022464	Slc38a4	1110012E16Rik|1700012A18Rik|Ata3|mATA3|mNAT3	solute carrier family 38, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-60614494-2	chr13	60614394	60614594	+	649.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	12283.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56933977-2	chr17	56933877	56934077	+	553.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_022328, intron 1 of 11)	intron (NM_022328, intron 1 of 11)	1411.0	NM_022328	64144.0	Mm.148748	NM_022328	ENSMUSG00000024212	Mllt1	AA407901|BAM11|ENL|LTG19	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122576862-4	chr8	122576768	122576968	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009698)	promoter-TSS (NM_009698)	39.0	NM_009698	11821.0	Mm.1786	NM_009698	ENSMUSG00000006589	Aprt	C85684	adenine phosphoribosyl transferase	protein-coding	4.97559443884975	5.19175474701374	4.39043852765471	5.08313797178829	4.89003376379312	5.22505929189283	4.64346756921327	5.25721459326443	0.0987147782696254	0.769032578746318	0.998431161219273
Merged-chr16-3238415-2	chr16	3238315	3238515	+	574.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TACTG)n|Simple_repeat|Simple_repeat	-353983.0	NM_146860	258859.0	Mm.377723	NM_146860	ENSMUSG00000051003	Olfr161	MOR131-1|OR912-47M6	olfactory receptor 161	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-58610194-2	chr11	58610081	58610281	+	784.5	f0_balb.idr|f1_balb.idr	intron (NM_144544, intron 5 of 5)	MLT1F2|LTR|ERVL-MaLR	3311.0	NM_144544	78354.0	Mm.58038	NM_144544	ENSMUSG00000037145	2210407C18Rik	Ep1	RIKEN cDNA 2210407C18 gene	protein-coding	1.08452223406683	1.21561937345647	2.20590049302679	1.14271665627252	2.94466839204507	2.15776347787817	2.93186200004303	3.09881620277346	3.20064268543753	0.00212958711708573	0.0349372646729187
Merged-chr17-56612744-2	chr17	56612644	56612844	+	828.666687	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018730)	promoter-TSS (NM_018730)	-651.0	NM_018730	54217.0	Mm.11376	NM_018730	ENSMUSG00000057863	Rpl36	-	ribosomal protein L36	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-132098309-2	chr1	132098209	132098409	+	798.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-30247.0	NM_001114662	213006.0	Mm.208445	NM_172510	ENSMUSG00000059149	Mfsd4a	A230072B04|A930031D07Rik|AI850289|Mfsd4	major facilitator superfamily domain containing 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-61458847-2	chr18	61458747	61458947	+	731.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25760.0	NR_045419	442846.0	Mm.417648	NR_045419		A530050N04Rik	-	RIKEN cDNA A530050N04 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-119124959-4	chr4	119124873	119125073	+	910.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011400, intron 2 of 9)	MIR3|SINE|MIR	16228.0	NM_011400	20525.0	Mm.21002	NM_011400	ENSMUSG00000028645	Slc2a1	Glut-1|Glut1	solute carrier family 2 (facilitated glucose transporter), member 1	protein-coding	2.8076849539589	2.68342962859114	4.21120210291518	3.14426557306579	3.00462730136885	2.70461452131734	2.97886028530195	1.49576304667651	-1.18147269152486	0.120532675329744	0.544833604198046
Merged-chr16-57569183-4	chr16	57569087	57569287	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177871, intron 1 of 1)	MIR|SINE|MIR	19945.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-36019559-1	chr8	36019459	36019659	+	703.0	f0_balb.idr	Intergenic	Intergenic	-75269.0	NM_172911	244418.0	Mm.244971	NM_172911	ENSMUSG00000050271	Prag1	9830148H23|D8Ertd82e|NACK|Sgk223|mFLJ00269	PEAK1 related kinase activating pseudokinase 1	protein-coding	0.878846838625246	0.496102126565985	0.841166595794234	1.05736936984663	1.46315526350013	0.498193348001431	0.685813758972019	0.480786642606933	0.177143284253269	0.914789925607181	1
Merged-chr6-38900317-4	chr6	38900235	38900435	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-18651.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-138248813-2	chr1	138248713	138248913	+	613.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-24925.0	NM_177397	338375.0	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-67764973-1	chr5	67764873	67765073	+	661.5	f0_balb.idr	exon (NM_009727, exon 12 of 36)	exon (NM_009727, exon 12 of 36)	82458.0	NM_009727	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-88765003-4	chr5	88764917	88765117	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007832)	promoter-TSS (NM_007832)	4.0	NM_007832	13178.0	Mm.298892	NM_007832	ENSMUSG00000029366	Dck	-	deoxycytidine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-33782840-4	chr5	33782744	33782944	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019694)	promoter-TSS (NM_019694)	-140.0	NM_019694	56384.0	Mm.260538	NM_019694	ENSMUSG00000005299	Letm1	-	leucine zipper-EF-hand containing transmembrane protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-10553147-4	chr10	10553053	10553253	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026405, intron 1 of 2)	intron (NM_026405, intron 1 of 2)	5054.0	NM_026405	67844.0	Mm.31486	NM_026405	ENSMUSG00000019832	Rab32	2810011A17Rik|AU022057	RAB32, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-74531022-2	chr5	74530939	74531139	+	639.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_178672, exon 1 of 5)	exon (NM_178672, exon 1 of 5)	703.0	NM_178672	212986.0	Mm.134147	NM_178672	ENSMUSG00000062110	Scfd2	E430013M20Rik|STXBP1L1	Sec1 family domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-27404658-2	chr7	27404555	27404755	+	772.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_032610, exon 16 of 36)	exon (NM_032610, exon 16 of 36)	-8102.0	NM_001199236	80297.0	Mm.459123	NM_032610	ENSMUSG00000011751	Sptbn4	1700022P15Rik|5830426A08Rik|ROSA62|SpbIV|Spnb4|dyn|lnd|nmf261|nmf379|qv	spectrin beta, non-erythrocytic 4	protein-coding	0.777435924474112	1.44293292468321	2.86174952545294	0.824159489755483	0.784645180428279	0.89003093411894	2.45945897043429	2.52759364519211	0.225227025819477	0.930110275786113	0.998431161219273
Merged-chr1-171661883-4	chr1	171661703	171661903	+	868.991699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8766.0	NM_144539	75345.0	Mm.164642	NM_144539	ENSMUSG00000038179	Slamf7	19A|19A24|4930560D03Rik|CRACC|CS1	SLAM family member 7	protein-coding	-0.574049040224471	-0.563755355083771	-0.567140583789313	-0.158836676945873	-0.4326755647566	-0.0773073579570004	-0.566395010402631	-0.5692896359391	0.622095998119609	0.815766167734643	1
Merged-chr7-6189633-2	chr7	6189533	6189733	+	662.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001146024, exon 5 of 5)	exon (NM_001146024, exon 5 of 5)	-7457.0	NM_178028	232836.0	Mm.246599	NM_178028	ENSMUSG00000034660	Galp	-	galanin-like peptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-147443254-2	chr4	147443154	147443354	+	541.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039209, intron 1 of 2)	CpG	-110023.0	NM_001014397	433804.0	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154	zinc finger protein 985	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-144299723-2	chr1	144299623	144299823	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50619.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44312086-4	chr7	44311975	44312175	+	849.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034115, intron 1 of 24)	intron (NM_001034115, intron 1 of 24)	1811.0	NM_001034115	243961.0	Mm.360368	NM_001034115	ENSMUSG00000038738	Shank1	-	SH3 and multiple ankyrin repeat domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-25998454-2	chr3	25998354	25998554	+	658.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_138666, intron 3 of 7)	RSINE1|SINE|B4	155532.0	NM_001163387	192167.0	Mm.316080	NM_138666	ENSMUSG00000063887	Nlgn1	6330415N05Rik|BB179718|NL1|Nlg1|mKIAA1070	neuroligin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81150497-2	chr10	81150397	81150597	+	547.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010731, exon 3 of 3)	3' UTR (NM_010731, exon 3 of 3)	14226.0	NM_010731	16969.0	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-120299480-3	chr13	120299361	120299561	+	839.3110960000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001037925)	promoter-TSS (NM_001037925)	-931.0	NM_001037925	625360.0	Mm.327506	NM_001037925	ENSMUSG00000094796	BC147527	-	cDNA sequence BC147527	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-10498182-2	chr17	10498082	10498282	+	571.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027032, intron 4 of 4)	intron (NM_027032, intron 4 of 4)	41966.0	NR_077238	319750.0	Mm.383485	NR_077237	ENSMUSG00000089633	A230009B12Rik	-	RIKEN cDNA A230009B12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-78815681-3	chr14	78815596	78815796	+	734.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33482.0	NM_027906	219189.0	Mm.159651	NM_027906	ENSMUSG00000058997	Vwa8	1300010F03Rik|4932416F07Rik|AI957255|Kiaa0564|mKIAA0564	von Willebrand factor A domain containing 8	protein-coding	1.33797409915657	0.872558616567224	0.851378919492647	0.834502517493745	1.48200109021538	1.54032252129931	2.45385366451611	1.90684659811223	3.37140456965405	0.0135965230930791	0.135565997842739
Merged-chr9-111273515-2	chr9	111273431	111273631	+	818.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_175266, exon 1 of 1)	exon (NM_175266, exon 1 of 1)	1686.0	NM_175266	77781.0	Mm.209005	NM_175266	ENSMUSG00000046785	Epm2aip1	A930003G21Rik|mKIAA0766	EPM2A (laforin) interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-132054080-2	chr2	132053980	132054180	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001355430, exon 16 of 16)	3' UTR (NM_001355430, exon 16 of 16)	-24092.0	NM_175445	215653.0	Mm.204737	NM_175445	ENSMUSG00000027339	Rassf2	3830431H01Rik|9030412M04Rik|AI852669|AW495050	Ras association (RalGDS/AF-6) domain family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-7399042-2	chr1	7398942	7399142	+	729.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	310122.0	NM_183028	319263.0	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-81053574-2	chr16	81053474	81053674	+	565.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3B|LINE|L1	-147123.0	NM_001113208	17968.0	Mm.433941	NM_010954	ENSMUSG00000022762	Ncam2	Ncam-2|Ocam|RNCAM	neural cell adhesion molecule 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-31688214-4	chr2	31688128	31688328	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001283047)	promoter-TSS (NM_001283047)	241.0	NR_153862	108168742.0	Mm.416860	NR_153862		Gm13427	-	predicted gene 13427	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-148407378-6	chr2	148407256	148407456	+	942.966675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009378, exon 1 of 1)	exon (NM_009378, exon 1 of 1)	832.0	NM_009378	21824.0	Mm.24096	NM_009378	ENSMUSG00000074743	Thbd	AI385582|CD141|TM	thrombomodulin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-148986986-2	chr3	148986911	148987111	+	601.333374	f0_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32376.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-52158940-4	chr1	52158840	52159040	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205313, intron 24 of 24)	intron (NM_001205313, intron 24 of 24)	39318.0	NM_001205313	20846.0	Mm.277406	NM_009283	ENSMUSG00000026104	Stat1	2010005J02Rik|AA408197	signal transducer and activator of transcription 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141011394-1	chr7	141011294	141011494	+	540.0	f1_balb.idr	promoter-TSS (NM_025378)	promoter-TSS (NM_025378)	-650.0	NM_025378	66141.0	Mm.141021	NM_025378	ENSMUSG00000025492	Ifitm3	1110004C05Rik|Cd225|Cdw217|DSPA2b|Fgls|IP15|mil-1	interferon induced transmembrane protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-72791866-4	chr9	72791748	72791948	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15426.0	NM_175485	235472.0	Mm.31696	NM_175485	ENSMUSG00000036030	Prtg	A230098A12Rik|Igdcc5	protogenin	protein-coding	4.504511564461	5.13664593992528	5.59823084015384	4.73256076692056	4.54011379988107	5.68777286459126	5.09302551339468	5.33507441751202	0.195071166086055	0.59074253965267	0.969590568131566
Merged-chr2-68886295-4	chr2	68886196	68886396	+	890.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347161, intron 1 of 10)	RMER10B|LTR|ERVL	24855.0	NM_001347161	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-80129845-3	chr12	80129773	80129973	+	839.357178	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033514, intron 2 of 2)	intron (NR_033514, intron 2 of 2)	2971.0	NR_033514	69548.0	Mm.269712	NR_033514		2310015A10Rik	5330419I17Rik	RIKEN cDNA 2310015A10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-102495682-4	chr4	102495561	102495761	+	798.479126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177983, intron 2 of 5)	intron (NM_001177983, intron 2 of 5)	-74399.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-67610499-1	chr18	67610399	67610599	+	562.0	f0_c57.idr	Intergenic	(CGG)n|Simple_repeat|Simple_repeat	30856.0	NM_001357523	225659.0	Mm.111928	NM_001081073	ENSMUSG00000073542	Cep76	6230425F05Rik|9630013E05	centrosomal protein 76	protein-coding	0.0972208012337047	-0.0518406756579605	0.0625922380152492	-0.229394100110187	0.0060756477900953	-0.22236163705361	-0.066399443878138	-0.22892320808453	-1.02953961058809	0.637478943738084	1
Merged-chr8-4403022-2	chr8	4402922	4403122	+	915.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53434.0	NM_009138	20300.0	Mm.7275	NM_009138	ENSMUSG00000023235	Ccl25	A130072A22Rik|AI852536|CKb15|Scya25|TECK	chemokine (C-C motif) ligand 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180616946-2	chr1	180616846	180617046	+	749.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24204.0	NM_001103182	72568.0	Mm.275044	NM_175186	ENSMUSG00000058729	Lin9	2700022J23Rik|Bara|Lin-9|TGS|TGS1|mLin-9	lin-9 homolog (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-86191455-1	chr5	86191355	86191555	+	624.0	f1_c57bl6.idr	intron (NM_001310653, intron 1 of 1)	intron (NM_001310653, intron 1 of 1)	6446.0	NM_001310653	14715.0	Mm.26791	NM_010323	ENSMUSG00000029255	Gnrhr	-	gonadotropin releasing hormone receptor	protein-coding	2.49103495789567	2.29098303411459	1.30578985946071	2.6268415348163	1.4627850485949	2.01250602599235	2.45562958378545	2.37881061428741	-0.330809571425998	0.733839985767252	0.998431161219273
Merged-chr18-76932898-2	chr18	76932798	76932998	+	832.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_025409, intron 1 of 2)	intron (NM_025409, intron 1 of 2)	2871.0	NM_025409	66191.0	Mm.28593	NM_025409	ENSMUSG00000090000	Ier3ip1	1110057H19Rik|AI644142|AL022842|AL022863|AV026606	immediate early response 3 interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-58418270-4	chr15	58418148	58418348	+	898.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145959, intron 1 of 23)	intron (NM_145959, intron 1 of 23)	2780.0	NM_145959	210998.0	Mm.3224	NM_145959	ENSMUSG00000037119	Fam91a1	AV220772|BC033609|D15Ertd621e|SKIN|mKIAA0493	family with sequence similarity 91, member A1	protein-coding	1.10701912312519	0.814666913695734	2.06255226014672	1.16825645833198	1.37315053073841	0.818231829282782	1.02829075393272	1.76629541897341	-0.307705372457623	0.819371309811155	0.998431161219273
Merged-chr3-95263417-4	chr3	95263318	95263518	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173347, intron 4 of 7)	intron (NM_173347, intron 4 of 7)	-12225.0	NM_134253	171388.0	Mm.331209	NM_134253	ENSMUSG00000028115	Bnipl	1700128A13Rik|BNIP-S|BNIPL1|BNIPL2|PP73|PP753	BCL2/adenovirus E1B 19kD interacting protein like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-43747982-4	chr7	43747854	43748054	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_077063, intron 2 of 2)	intron (NR_077063, intron 2 of 2)	7982.0	NR_077063	100504720.0	Mm.226595	NR_077063		2310002F09Rik	-	RIKEN cDNA 2310002F09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4100947-3	chr19	4100904	4101104	+	912.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_008851, exon 1 of 23)	5' UTR (NM_008851, exon 1 of 23)	382.0	NM_008851	18739.0	Mm.1860	NM_008851	ENSMUSG00000024851	Pitpnm1	DRES9|Mpt-1|Nir-2|PITPnm 1|Pitpnm|R75447|Rd9|RdgB|RdgB1	phosphatidylinositol transfer protein, membrane-associated 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-35104313-2	chr5	35104213	35104413	+	666.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013587, intron 1 of 7)	intron (NM_013587, intron 1 of 7)	1384.0	NM_013587	16976.0	Mm.277661	NM_013587	ENSMUSG00000029103	Lrpap1	AA617339|AI790446|AU042172|C77774|HBP44|RAP	low density lipoprotein receptor-related protein associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120437876-2	chr8	120437776	120437976	+	839.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50990.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-9713716-4	chr3	9713621	9713821	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053182, intron 2 of 7)	intron (NM_053182, intron 2 of 7)	-103636.0	NM_133218	170753.0	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-121386535-5	chr5	121386447	121386647	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163470)	promoter-TSS (NM_001163470)	-932.0	NM_172275	231712.0	Mm.20488	NM_172275	ENSMUSG00000042726	Trafd1	1110008K06Rik|Fln29	TRAF type zinc finger domain containing 1	protein-coding	4.39586550839551	3.92153554066179	3.79399227386441	3.82393055771586	3.8906417769911	3.87394474619478	2.76056687319432	3.4749127800646	-0.62694898624923	0.218712433893959	0.709986953966375
Merged-chr10-81125741-2	chr10	81125641	81125841	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10530.0	NM_010731	16969.0	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-75168988-4	chr1	75168897	75169097	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026846, intron 1 of 8)	intron (NM_026846, intron 1 of 8)	262.0	NM_026846	68818.0	Mm.32646	NM_026846	ENSMUSG00000026197	Zfand2b	1110060O18Rik|C81256	zinc finger, AN1 type domain 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133211157-2	chr4	133211057	133211257	+	994.666626	f1_balb.idr|f1_c57bl6.idr	exon (NM_008154, exon 2 of 2)	exon (NM_008154, exon 2 of 2)	1379.0	NM_008154	14748.0	Mm.4721	NM_008154	ENSMUSG00000049649	Gpr3	Gpcr20|Gpcr21|Gpcr3	G-protein coupled receptor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44700635-2	chr9	44700535	44700735	+	714.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153537, intron 13 of 21)	intron (NM_153537, intron 13 of 21)	27402.0	NM_001277847	58866.0	Mm.45380	NM_021481	ENSMUSG00000032098	Treh	2210412M19Rik	trehalase (brush-border membrane glycoprotein)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120358077-4	chr11	120357970	120358170	+	942.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3464.0	NM_172802	238021.0	Mm.481403	NM_172802	ENSMUSG00000025380	Fscn2	A930022G03|Ahl8|C630046B20Rik	fascin actin-bundling protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118156724-4	chr11	118156642	118156842	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27523.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-141075462-4	chr6	141075355	141075555	+	861.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-173814.0	NM_018779	54611.0	Mm.103728	NM_018779	ENSMUSG00000041741	Pde3a	A930022O17Rik|C87899	phosphodiesterase 3A, cGMP inhibited	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3607810-3	chr4	3607710	3607910	+	935.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054089, intron 12 of 12)	intron (NM_054089, intron 12 of 12)	32931.0	NM_054089	116940.0	Mm.171323	NM_054089	ENSMUSG00000028233	Tgs1	D4Ertd800e|Ncoa6ip|Pimt	trimethylguanosine synthase 1	protein-coding	3.23011408026522	3.25555169979036	2.77830942535165	2.80139608527545	2.67952686841068	2.49737415001807	1.56527174299374	3.07719035866501	-0.866492585858538	0.2500908161246	0.748509191602971
Merged-chr10-60697191-4	chr10	60697097	60697297	+	773.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045556)	promoter-TSS (NR_045556)	-707.0	NM_023370	22295.0	Mm.440327	NM_023370	ENSMUSG00000012819	Cdh23	4930542A03Rik|USH1D|ahl|ahl1|bob|bus|mdfw|nmf112|nmf181|nmf252|sals|v	cadherin 23 (otocadherin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-154140237-2	chr4	154140137	154140337	+	782.333313	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011642)	promoter-TSS (NM_011642)	-29.0	NM_011642	22062.0	Mm.78015	NM_011642	ENSMUSG00000029026	Trp73	TAp73|Tp73|deltaNp73|p73	transformation related protein 73	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-21223004-3	chr11	21222875	21223075	+	909.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16057.0	NM_139061	245944.0	Mm.170103	NM_139061	ENSMUSG00000020128	Vps54	Hcc8|Vps54l|mSLP8|wr	VPS54 GARP complex subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-79818770-2	chr10	79818670	79818870	+	715.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023128, intron 8 of 8)	intron (NM_023128, intron 8 of 8)	-2251.0	NM_030218	78906.0	Mm.33087	NM_030218	ENSMUSG00000035852	Misp	9130017N09Rik	mitotic spindle positioning	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-119857968-4	chr8	119857861	119858061	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4344.0	NM_146219	234796.0	Mm.86446	NM_146219	ENSMUSG00000031828	Klhl36	-	kelch-like 36	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-62717898-2	chr1	62717798	62717998	+	608.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077404, intron 1 of 16)	intron (NM_001077404, intron 1 of 16)	14581.0	NM_001077407	18187.0	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-74524379-1	chr17	74524279	74524479	+	556.0	f1_c57bl6.idr	Intergenic	L1MC|LINE|L1	-3916.0	NM_007566	12211.0	Mm.442564	NM_007566	ENSMUSG00000024073	Birc6	A430032G04Rik|A430040A19Rik|AA501170|Bruce|D630005A10Rik|mKIAA1289	baculoviral IAP repeat-containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-47538330-1	chr19	47538230	47538430	+	604.0	f1_balb.idr	Intergenic	Intergenic	-1211.0	NM_175360	108689.0	Mm.218048	NM_175360	ENSMUSG00000042694	Stn1	0610009H20Rik|2310057J23Rik|AAF-44|AAF44|AI413458|Obfc1|RPA-32	STN1, CST complex subunit	protein-coding	-0.770847234568204	-0.762040894855499	-0.764939801776131	-0.767167277527549	-0.510454053419776	-0.571715057404529	-0.31892364744463	-0.766778720584646	3.07146617477932	0.262161511370722	1
Merged-chr11-101248852-2	chr11	101248752	101248952	+	999.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_019444)	TTS (NM_019444)	2518.0	NM_019444	54409.0	Mm.260698	NM_019444	ENSMUSG00000001240	Ramp2	-	receptor (calcitonin) activity modifying protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-127249701-2	chr1	127249601	127249801	+	669.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145128, intron 1 of 17)	intron (NM_145128, intron 1 of 17)	44715.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126085197-2	chr7	126085097	126085297	+	752.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2786.0	NM_001358885	269994.0	Mm.39599	NM_001101488	ENSMUSG00000046182	Gsg1l	AI852434|C230098I05Rik|G630023A01Rik|Gm637|g1l	GSG1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-128611988-2	chr7	128611896	128612096	+	892.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_178641, intron 1 of 19)	intron (NM_178641, intron 1 of 19)	631.0	NM_178641	101490.0	Mm.490344	NM_178641	ENSMUSG00000042105	Inpp5f	5830435P03Rik|AI115354|AW561896|SAC2|cI-27|hSAC2|mKIAA0966	inositol polyphosphate-5-phosphatase F	protein-coding	1.36674782360577	0.708360431398412	1.18535601531163	0.689709945849815	0.974029372591067	1.24358400329653	1.42595759292954	0.871223611261663	0.519735413646621	0.719458830180196	0.998431161219273
Merged-chr2-154902296-3	chr2	154902202	154902402	+	789.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9396.0	NM_026030	67204.0	Mm.377134	NM_026030	ENSMUSG00000074656	Eif2s2	2810026E11Rik|38kDa|AA408636|AA571381|AA986487|AW822225|D2Ertd303e|EIF2|EIF2B	eukaryotic translation initiation factor 2, subunit 2 (beta)	protein-coding	1.58001553914531	2.30741376364453	1.50343935232611	2.26430063049316	1.97341326047586	2.32454082019097	1.8683880484038	2.0704961399707	0.257113709208535	0.787087713389816	0.998431161219273
Merged-chr2-158409734-4	chr2	158409620	158409820	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291138)	promoter-TSS (NM_001291138)	-133.0	NM_001291137	228850.0	Mm.398185	NM_177227	ENSMUSG00000027652	Ralgapb	AI507211|B230339M05Rik|p170	Ral GTPase activating protein, beta subunit (non-catalytic)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-78247951-4	chr11	78247859	78248059	+	948.43335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359106, intron 1 of 3)	RLTR12E|LTR|ERVK	2208.0	NM_001359106	20316.0	Mm.20755	NM_009143	ENSMUSG00000002064	Sdf2	AI853825	stromal cell derived factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-64440735-4	chr14	64440661	64440861	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026322, exon 6 of 11)	exon (NM_026322, exon 6 of 11)	265.0	NM_001253715	110265.0	Mm.26713	NM_026322	ENSMUSG00000054733	Msra	2310045J23Rik|6530413P12Rik|MSR-A	methionine sulfoxide reductase A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-73470610-2	chr6	73470511	73470711	+	944.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025737)	promoter-TSS (NM_025737)	410.0	NR_108032	73408.0	Mm.233629	NR_108032	ENSMUSG00000107408	1700065L07Rik	-	RIKEN cDNA 1700065L07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16727058-1	chr7	16726958	16727158	+	547.0	f1_balb.idr	TTS (NM_011927)	TTS (NM_011927)	5129.0	NM_011927	26368.0	Mm.27096	NM_011927	ENSMUSG00000007209	Ceacam9	AA410097|AW545709|Cea-5|Cea5|mmCGM8	carcinoembryonic antigen-related cell adhesion molecule 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-25446032-3	chr15	25445944	25446144	+	811.988892	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027376, intron 1 of 1)	intron (NR_027376, intron 1 of 1)	31852.0	NR_027376	432939.0	Mm.146555	NM_001013791		Gm5468	100040583|EG432939	predicted gene 5468	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-58499838-4	chr16	58499756	58499956	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357433, intron 2 of 10)	intron (NM_001357433, intron 2 of 10)	23570.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-99179670-4	chr4	99179564	99179764	+	908.591675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14270.0	NM_175029	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	4.41203666040476	4.86564557677689	5.47533731445016	5.91984224836011	3.28125415425718	3.38658089752604	3.95045575889657	2.85958566960307	-2.37431990760652	3.32871873791341e-07	2.53843013246727e-05
Merged-chr1-93442299-2	chr1	93442199	93442399	+	724.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133808, intron 1 of 27)	intron (NM_133808, intron 1 of 27)	3402.0	NM_001301364	110611.0	Mm.30012	NM_133808	ENSMUSG00000034088	Hdlbp	1110005P14Rik|AA960365|AI118566|D1Ertd101e	high density lipoprotein (HDL) binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94355585-4	chr10	94355475	94355675	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 1 of 4)	intron (NM_001359762, intron 1 of 4)	43626.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117087181-4	chr11	117087071	117087271	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9823.0	NR_105853	102465258.0		NR_105853	ENSMUSG00000104740	Mir6516	mmu-mir-6516	microRNA 6516	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-130525243-3	chr2	130525150	130525350	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355161, intron 7 of 21)	intron (NM_001355161, intron 7 of 21)	38499.0	NR_040348	321014.0	Mm.442588	NR_040348	ENSMUSG00000060029	4930473A02Rik	-	RIKEN cDNA 4930473A02 gene	ncRNA	3.07280647842903	2.72402497353311	3.02917826124492	3.67346135712206	3.63627068430804	3.27142935956102	3.73705541014302	3.49283710067561	0.589122388062718	0.301345128505741	0.802739531929815
Merged-chr15-73350513-4	chr15	73350410	73350610	+	862.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358046, intron 2 of 34)	intron (NM_001358046, intron 2 of 34)	72681.0	NM_007982	14083.0	Mm.254494	NM_007982	ENSMUSG00000022607	Ptk2	FADK 1|FAK|FRNK|Fadk|p125FAK	PTK2 protein tyrosine kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-19655893-2	chr2	19655793	19655993	+	579.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_033642)	TTS (NR_033642)	2004.0	NR_033642	100041244.0	Mm.407223	NR_033642		Gm3230	-	predicted gene 3230	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16614688-2	chr7	16614581	16614781	+	1000.0	f0_balb.idr|f0_c57.idr	5' UTR (NM_172739, exon 1 of 7)	5' UTR (NM_172739, exon 1 of 7)	312.0	NM_172739	232906.0	Mm.28646	NM_172739	ENSMUSG00000058230	Arhgap35	6430596G11Rik|AI841135|Grlf1|mKIAA1722|p190A|p190RhoGAP	Rho GTPase activating protein 35	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-60876707-4	chr13	60876591	60876791	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RCHARR1|DNA|hAT-Charlie	-12275.0	NM_178098	214639.0	Mm.19839	NM_178098	ENSMUSG00000050345	4930486L24Rik	AW545031	RIKEN cDNA 4930486L24 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-50767686-1	chr9	50767586	50767786	+	666.0	f1_c57bl6.idr	promoter-TSS (NM_198675)	promoter-TSS (NM_198675)	498.0	NM_001361108	68721.0	Mm.171374	NM_023483	ENSMUSG00000037971	1110032A03Rik	4930500N06Rik|c11orf1	RIKEN cDNA 1110032A03 gene	protein-coding	2.02791151674282	2.11009744349883	2.72944088849111	2.1319929790467	2.16370611207212	1.94353804906274	2.83261458716478	2.58092554479085	0.336461050485418	0.688156379757704	0.996533206832645
Merged-chr1-131184527-4	chr1	131184416	131184616	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018750, intron 2 of 5)	intron (NM_018750, intron 2 of 5)	15669.0	NM_001311094	54354.0	Mm.248291	NM_018750	ENSMUSG00000026430	Rassf5	1300019G20Rik|Maxp1|Nore1|Nore1A|Nore1B|Rapl	Ras association (RalGDS/AF-6) domain family member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45408246-2	chr7	45408146	45408346	+	890.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010596, intron 1 of 1)	B1_Mur1|SINE|Alu	2286.0	NM_010596	16495.0	Mm.12955	NM_010596	ENSMUSG00000038201	Kcna7	Kv1.7	potassium voltage-gated channel, shaker-related subfamily, member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32539703-2	chr2	32539603	32539803	+	760.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153560, intron 1 of 10)	intron (NM_153560, intron 1 of 10)	4344.0	NM_153560	98952.0	Mm.4065	NM_153560	ENSMUSG00000039157	Fam102a	AI426465|C230093N12Rik|Eeig1	family with sequence similarity 102, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-44704548-3	chr4	44704450	44704650	+	892.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_073462, exon 1 of 1)	non-coding (NR_073462, exon 1 of 1)	1750.0	NR_073462	70602.0	Mm.491142	NR_073462	ENSMUSG00000103995	5730488B01Rik	-	RIKEN cDNA 5730488B01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-73677757-4	chr8	73677664	73677864	+	821.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER3|DNA|hAT-Charlie	-324224.0	NM_010687	16795.0	Mm.324371	NM_010687	ENSMUSG00000004383	Large1	BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd	LARGE xylosyl- and glucuronyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-42299613-3	chr10	42299511	42299711	+	703.194458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MD|LINE|L1	-22869.0	NM_019740	56484.0	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-54215989-3	chr13	54215883	54216083	+	997.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153432, intron 2 of 3)	intron (NR_153432, intron 2 of 3)	23850.0	NR_153432	15466.0	Mm.57243	NM_008286	ENSMUSG00000034987	Hrh2	H2R|HH2R	histamine receptor H2	protein-coding	5.84071362611015	5.96620469566366	5.76394043586194	6.13978174666132	3.32571654099371	2.18005023359115	2.53959821075626	1.96669602119324	-4.27820417527511	8.46010259293545e-20	9.12893737854542e-17
Merged-chr17-12783423-4	chr17	12783313	12783513	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027784, intron 2 of 2)	intron (NR_027784, intron 2 of 2)	-13707.0	NM_010515	16004.0	Mm.26553	NM_010515	ENSMUSG00000023830	Igf2r	AI661837|CD222|CI-MPR|M6P/IGF2R|Mpr300	insulin-like growth factor 2 receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-15575126-3	chr3	15575029	15575229	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001173460)	promoter-TSS (NM_001173460)	-64.0	NM_001173460	668101.0	Mm.423523	NM_001173460	ENSMUSG00000095028	Sirpb1b	-	signal-regulatory protein beta 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-116950426-4	chr10	116950275	116950475	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_038025)	promoter-TSS (NR_038025)	78.0	NM_001359645	216363.0	Mm.336394	NM_001003950	ENSMUSG00000064181	Rab3ip	B230311A06|Gtpat12|Rabin3	RAB3A interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-20798110-4	chr13	20798015	20798215	+	975.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012054, intron 1 of 20)	intron (NM_012054, intron 1 of 20)	4002.0	NM_012054	27052.0	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	4.51343641539231	3.01815640481736	4.1297346424412	3.77742818391132	3.47739293625816	3.81361114526822	3.84223620117523	3.8620050537771	-0.32105397720452	0.528086583815643	0.949163512326988
Merged-chr10-128096119-2	chr10	128096019	128096219	+	689.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_054078, intron 1 of 29)	intron (NM_054078, intron 1 of 29)	3336.0	NM_054078	116848.0	Mm.252213	NM_054078	ENSMUSG00000040054	Baz2a	AA415431|C030005G16Rik|C78388|Tip5|Walp3|mKIAA0314	bromodomain adjacent to zinc finger domain, 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-116028332-2	chr12	116028211	116028411	+	661.0	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-19413.0	NM_001004066	56220.0	Mm.254997	NM_019565	ENSMUSG00000042063	Zfp386	Kzf1|mKIAA4205	zinc finger protein 386 (Kruppel-like)	protein-coding	2.63950912267873	2.71038088903474	2.74604633510877	2.66944608846784	2.84890147700801	3.51120857538102	2.9863135447205	3.15670704570145	0.846194482763141	0.191689757150178	0.670022180678953
Merged-chr19-44419143-3	chr19	44419060	44419260	+	779.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11451.0	NM_009127	20249.0	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-18773253-3	chr2	18773162	18773362	+	885.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12400.0	NR_126079	100041479.0	Mm.393659	NR_126079	ENSMUSG00000092353	Gm3363	-	predicted gene 3363	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-6002659-4	chr13	6002576	6002776	+	873.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	X3_LINE|LINE|RTE-BovB	141187.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117317739-2	chr11	117317639	117317839	+	828.416687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113486, intron 3 of 11)	intron (NM_001113486, intron 3 of 11)	-13976.0	NM_017380	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-88657228-2	chr1	88657128	88657328	+	573.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44963.0	NM_177305	320982.0	Mm.27968	NM_177305	ENSMUSG00000049866	Arl4c	A630084M22Rik|Arl7|LAK	ADP-ribosylation factor-like 4C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-14228118-2	chr2	14228018	14228218	+	778.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-1296.0	NM_008625	17533.0	Mm.2019	NM_008625	ENSMUSG00000026712	Mrc1	AW259686|CD206|MR	mannose receptor, C type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-112635397-2	chr13	112635297	112635497	+	680.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145885, intron 5 of 21)	intron (NM_001145885, intron 5 of 21)	16913.0	NM_010029	13206.0	Mm.12818	NM_010029	ENSMUSG00000021758	Ddx4	AV206478|Mvh|VASA	DEAD (Asp-Glu-Ala-Asp) box polypeptide 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-55480445-1	chr16	55480345	55480545	+	615.0	f0_balb.idr	Intergenic	Intergenic	-14286.0	NR_039578	100628589.0		NR_039578	ENSMUSG00000093292	Mir5118	mmu-mir-5118|mu-mir-5118	microRNA 5118	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-17056221-4	chr7	17056123	17056323	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016868, intron 2 of 14)	CpG	456.0	NM_016868	53417.0	Mm.135110	NM_016868	ENSMUSG00000004328	Hif3a	Ipas|MOP7|NEPAS|bHLHe17	hypoxia inducible factor 3, alpha subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21989449-4	chr9	21989345	21989545	+	971.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023622)	promoter-TSS (NM_023622)	8.0	NM_023622	71746.0	Mm.110594	NM_023622	ENSMUSG00000040146	Rgl3	1300003D20Rik|mFLJ00153	ral guanine nucleotide dissociation stimulator-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-55468027-2	chr13	55467927	55468127	+	657.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001030296, intron 1 of 2)	intron (NM_001030296, intron 1 of 2)	3760.0	NM_001030296	432763.0	Mm.315457	NM_001030296	ENSMUSG00000034686	Prr7	XM_484263	proline rich 7 (synaptic)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-133550124-3	chr3	133550082	133550282	+	688.977783	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5792.0	NM_001346736	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-41972957-3	chr10	41972867	41973067	+	849.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034858, intron 7 of 17)	intron (NM_001034858, intron 7 of 17)	45415.0	NM_001034858	213402.0	Mm.211320	NM_001034858	ENSMUSG00000071324	Armc2	2610018I05Rik	armadillo repeat containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-97829008-2	chr15	97828908	97829108	+	642.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001204276, intron 1 of 25)	intron (NM_001204276, intron 1 of 25)	2759.0	NM_019572	56233.0	Mm.384027	NM_019572	ENSMUSG00000022475	Hdac7	5830434K02Rik|HD7|HD7a|Hdac7a|mFLJ00062	histone deacetylase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-45040278-2	chr10	45040178	45040378	+	716.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	-26936.0	NM_011156	19072.0	Mm.10281	NM_011156	ENSMUSG00000019849	Prep	AI047692|AI450383|D10Wsu136e|PEP|Pop	prolyl endopeptidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-73078791-8	chr15	73078695	73078895	+	910.2728880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-11617.0	NM_053068	93696.0	Mm.23095	NM_053068	ENSMUSG00000068391	Chrac1	2410152E03Rik|2810406L04Rik|YCL1	chromatin accessibility complex 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-12940595-2	chr17	12940495	12940695	+	629.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153151)	promoter-TSS (NM_153151)	-199.0	NM_153151	224530.0	Mm.490312	NM_153151	ENSMUSG00000062480	Acat3	ACTL	acetyl-Coenzyme A acetyltransferase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-57473484-4	chr9	57473393	57473593	+	905.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5433.0	NM_001301635	56807.0	Mm.102278	NM_020270	ENSMUSG00000040722	Scamp5	Sc5	secretory carrier membrane protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-103502792-3	chr15	103502626	103502826	+	903.361084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008800)	promoter-TSS (NM_008800)	-308.0	NM_008800	18574.0	Mm.390792	NM_008800	ENSMUSG00000022489	Pde1b	Pde1b1	phosphodiesterase 1B, Ca2+-calmodulin dependent	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-29705409-4	chr11	29705316	29705516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194051, intron 1 of 8)	intron (NM_194051, intron 1 of 8)	11642.0	NM_194051	68585.0	Mm.192580	NM_024226	ENSMUSG00000020458	Rtn4	1110020G17Rik|AA407876|AA409940|AA960376|ASY|C130026I10Rik|NOGO|NSP-CL|NgA|Nogo-A|Nogo-B|Nogo-C|mKIAA0886|mKIAA4153	reticulon 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-107649344-2	chr7	107649244	107649444	+	621.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_008905, intron 2 of 24)	intron (NM_008905, intron 2 of 24)	-16134.0	NM_001357437	19024.0	Mm.2817	NM_008905	ENSMUSG00000036528	Ppfibp2	Cclp1	PTPRF interacting protein, binding protein 2 (liprin beta 2)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-37576627-2	chr16	37576527	37576727	+	589.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3526.0	NR_027778	15233.0	Mm.157442	NM_013547	ENSMUSG00000022821	Hgd	Hgo|aku	homogentisate 1, 2-dioxygenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3575933-4	chr19	3575842	3576042	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028999)	promoter-TSS (NM_028999)	-193.0	NM_028999	52036.0	Mm.284686	NM_028999	ENSMUSG00000024908	Ppp6r3	4930528G08Rik|9130026N02Rik|D19Bwg1430e|D19Ertd703e|Pp6r3|Ppcs3|Pptcs3|Sapl|Saps3|mKIAA1558	protein phosphatase 6, regulatory subunit 3	protein-coding	7.16698534020357	6.76538277334877	7.48891464492464	6.79303245752531	7.23594154003265	6.72870722447035	7.52847459543089	6.86303490133072	0.0415743173071934	0.845776895102068	0.998431161219273
Merged-chr13-41515918-4	chr13	41515844	41516044	+	907.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28584.0	NM_001111324	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-37852293-4	chr18	37852184	37852384	+	997.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007858, intron 25 of 26)	intron (NM_007858, intron 25 of 26)	2376.0	NR_105945	102465592.0		NR_105945	ENSMUSG00000098706	Mir6979	Gm27524|mmu-mir-6979	microRNA 6979	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-134914990-4	chr4	134914887	134915087	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027935)	promoter-TSS (NM_027935)	-71.0	NM_027935	71817.0	Mm.88349	NM_027935	ENSMUSG00000028822	Tmem50a	3200001F09Rik|CAM|Smp1	transmembrane protein 50A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-72570772-4	chr11	72570659	72570859	+	938.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20513.0	NM_029932	77577.0	Mm.46185	NM_029932	ENSMUSG00000020798	Spns3	9830002I17Rik	spinster homolog 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-110654232-2	chr8	110654132	110654332	+	991.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_151675, intron 12 of 17)	intron (NR_151675, intron 12 of 17)	35665.0	NR_151675	234729.0	Mm.274894	NM_146216	ENSMUSG00000010936	Vac14	AA959718|BC032215|D8Wsu151e|Tax1bp2|Trx|ingls	Vac14 homolog (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-13356186-4	chr14	13356084	13356284	+	975.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028052, intron 2 of 5)	intron (NM_028052, intron 2 of 5)	71404.0	NM_028052	72003.0	Mm.317515	NM_028052	ENSMUSG00000056296	Synpr	1500003F20Rik|SPO	synaptoporin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-113655005-3	chr6	113654914	113655114	+	839.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 2 of 11)	intron (NM_001113553, intron 2 of 11)	16547.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-128804877-2	chr4	128804777	128804977	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081098, intron 1 of 8)	intron (NM_001081098, intron 1 of 8)	1235.0	NM_001081098	230761.0	Mm.22616	NM_001081098	ENSMUSG00000028799	Zfp362	-	zinc finger protein 362	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-115523178-3	chr6	115523076	115523276	+	958.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21528.0	NM_199033	381802.0	Mm.291208	NM_199033	ENSMUSG00000042389	Tsen2	AU067695	tRNA splicing endonuclease subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83630789-3	chr11	83630697	83630897	+	851.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18581.0	NM_011337	20302.0	Mm.1282	NM_011337	ENSMUSG00000000982	Ccl3	AI323804|G0S19-1|LD78alpha|MIP-1alpha|MIP1-(a)|MIP1-alpha|Mip1a|Scya3	chemokine (C-C motif) ligand 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-80150819-4	chr12	80150705	80150905	+	753.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17961.0	NR_033514	69548.0	Mm.269712	NR_033514		2310015A10Rik	5330419I17Rik	RIKEN cDNA 2310015A10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55827036-2	chr14	55826936	55827136	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_023699, exon 2 of 10)	exon (NM_023699, exon 2 of 10)	2241.0	NM_023699	73181.0	Mm.27908	NM_023699	ENSMUSG00000023411	Nfatc4	3110041H08Rik|AW107667|AW546455|Nfat3	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-9638206-4	chr13	9638085	9638285	+	939.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081426, intron 31 of 36)	(CA)n|Simple_repeat|Simple_repeat	125625.0	NM_001347471	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-75551967-4	chr17	75551872	75552072	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133747)	promoter-TSS (NM_133747)	-26.0	NM_001357860	72722.0	Mm.24641	NM_133747	ENSMUSG00000002017	Fam98a	2810405J04Rik|AL024114	family with sequence similarity 98, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139725187-4	chr5	139725081	139725281	+	810.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_174850, intron 1 of 16)	intron (NM_174850, intron 1 of 16)	11152.0	NM_174850	231830.0	Mm.240510	NM_174850	ENSMUSG00000036718	Micall2	A930021H16Rik|JRAB|MICAL-L2|mFLJ00139	MICAL-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127756145-2	chr10	127756045	127756245	+	642.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3618.0	NM_080436	107605.0	Mm.484271	NM_080436	ENSMUSG00000089789	Rdh1	-	retinol dehydrogenase 1 (all trans)	protein-coding	0.434980259230864	0.561629451691434	0.0967145653187283	0.244975888205462	0.0876051471665326	0.439015079010632	0.0977990471871624	0.379513335915575	-0.676687137415799	0.729410634925099	1
Merged-chr5-122648669-2	chr5	122648569	122648769	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038845, intron 1 of 12)	MIR|SINE|MIR	-1755.0	NM_001284402	18439.0	Mm.42026	NM_011027	ENSMUSG00000029468	P2rx7	AI467586|P2X(7)|P2X7R	purinergic receptor P2X, ligand-gated ion channel, 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-59959478-4	chr9	59959358	59959558	+	947.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001101600)	TTS (NM_001101600)	8164.0	NM_001101600	665389.0	Mm.335214	NM_001101600		Gm7616	EG665389	predicted gene 7616	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-17570966-1	chr15	17570866	17571066	+	541.0	f1_balb.idr	Intergenic	Lx|LINE|L1	792865.0	NM_009869	12565.0	Mm.439758	NM_009869	ENSMUSG00000025370	Cdh9	-	cadherin 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-39847214-4	chr17	39847133	39847333	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_046233, exon 1 of 1)	non-coding (NR_046233, exon 1 of 1)	4236.0	NR_046233	100861531.0		NR_046233		Rn45s	-	45S pre-ribosomal RNA	rRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-125765339-2	chr8	125765239	125765439	+	697.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175561, intron 28 of 33)	MTEb|LTR|ERVL-MaLR	31136.0	NM_001310688	66566.0	Mm.25296	NM_025636	ENSMUSG00000031851	Ntpcr	2310079N02Rik|AI449709	nucleoside-triphosphatase, cancer-related	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-8376833-4	chr18	8376713	8376913	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	507100.0	NM_001360956	225131.0	Mm.204524	NM_153085	ENSMUSG00000024283	Wac	1110067P07Rik|A230035H12Rik|AI256735|AI256776|Wwp4	WW domain containing adaptor with coiled-coil	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-92957210-3	chr1	92957098	92957298	+	933.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	-6608.0	NR_015525	100037260.0	Mm.442236	NR_015525	ENSMUSG00000100632	9430060I03Rik	-	RIKEN cDNA 9430060I03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-82147141-4	chr15	82147053	82147253	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033218)	promoter-TSS (NM_033218)	-116.0	NM_033218	20788.0	Mm.38016	NM_033218	ENSMUSG00000022463	Srebf2	AI608257|SREBP-2|SREBP2|SREBP2gc|bHLHd2|lop13|nuc	sterol regulatory element binding factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-122859257-4	chr4	122859162	122859362	+	834.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008917)	TTS (NM_008917)	23035.0	NM_008917	19063.0	Mm.277719	NM_008917	ENSMUSG00000028657	Ppt1	9530043G02Rik|AA960502|C77813|CLN1|D4Ertd184e|INCL|PPT	palmitoyl-protein thioesterase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-31253371-4	chr6	31253276	31253476	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040257, intron 2 of 7)	intron (NR_040257, intron 2 of 7)	33025.0	NR_040259	73652.0	Mm.441297	NR_040257	ENSMUSG00000087380	2210408F21Rik	-	RIKEN cDNA 2210408F21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-91010861-3	chr1	91010751	91010951	+	811.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111312, intron 1 of 12)	intron (NM_001111312, intron 1 of 12)	12124.0	NM_001111312	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-63386405-2	chr4	63386305	63386505	+	795.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001045514, intron 5 of 21)	intron (NM_001045514, intron 5 of 21)	11835.0	NM_001305432	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-32011360-3	chr4	32011270	32011470	+	972.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009316, intron 14 of 16)	L1MA5A|LINE|L1	47263.0	NM_172688	26409.0	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-94290291-4	chr16	94290198	94290398	+	961.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360045)	promoter-TSS (NM_001360045)	-7.0	NM_001360045	110948.0	Mm.30921	NM_139145	ENSMUSG00000040820	Hlcs	410I21.SP6|D16Jhu34	holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-107953259-1	chr13	107953159	107953359	+	716.0	f1_c57bl6.idr	Intergenic	Intergenic	-63195.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	-0.928940593673113	0.15260240890053	-0.919403370180166	-0.922956985378252	-0.928043701396376	-0.905131160573435	-0.918394354967459	-0.922333464130162	-3.4757377177308	0.248847205590595	1
Merged-chr18-56709876-4	chr18	56709706	56709906	+	977.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010721, intron 1 of 10)	B3|SINE|B2	1993.0	NM_010721	16906.0	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107575090-3	chr9	107574989	107575189	+	962.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-1838.0	NM_008317	15586.0	Mm.475658	NM_008317	ENSMUSG00000010051	Hyal1	Hya1|Hyal-1	hyaluronoglucosaminidase 1	protein-coding	4.16896506306332	3.67641242625596	4.10128221667228	4.04765721011981	3.71929860812277	3.4077300417215	3.49216166407101	3.18708645729776	-0.797854509608395	0.0996245740789723	0.49093671225075
Merged-chr3-133711745-2	chr3	133711645	133711845	+	763.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-167355.0	NM_001346736	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-38690069-2	chr6	38689969	38690169	+	638.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27000.0	NM_001101507	665180.0	Mm.349066	NM_001101507	ENSMUSG00000079598	Clec2l	AI414054|AW122724|Gm1064	C-type lectin domain family 2, member L	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-110599785-4	chr13	110599691	110599891	+	975.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CAAAA)n|Simple_repeat|Simple_repeat	204747.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-79852383-4	chr10	79852286	79852486	+	968.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_029447, exon 1 of 1)	non-coding (NR_029447, exon 1 of 1)	-2046.0	NM_001077363	19205.0	Mm.265610	NM_008956	ENSMUSG00000006498	Ptbp1	AA407203|AL033359|HNRPI|PTB-1|PTB2|PTB3|PTB4|Ptb|pPTB	polypyrimidine tract binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-37535232-4	chr19	37535143	37535343	+	964.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15175.0	NM_175353	107371.0	Mm.24865	NM_175353	ENSMUSG00000053799	Exoc6	4833405E05Rik|AW413330|C430002C19|Sec15|Sec15l1|hbd|msec15	exocyst complex component 6	protein-coding	0.998111334261428	0.856932117258145	1.07728337039362	1.52968139700104	1.32455125941221	0.861287030029112	2.27283287858584	2.04260996728627	2.01040508247706	0.121081500940143	0.546004453124467
Merged-chr15-59699235-2	chr15	59699135	59699335	+	625.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50581.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-20708539-3	chr14	20708408	20708608	+	878.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027996, intron 1 of 25)	intron (NM_027996, intron 1 of 25)	956.0	NM_001252082	268721.0	Mm.275082	NM_027996	ENSMUSG00000021819	Zswim8	2310021P13Rik|4832404P21Rik|Kiaa0913|mKIAA0913	zinc finger SWIM-type containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6268973-4	chr19	6268875	6269075	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC4|LINE|L1	4131.0	NR_029720	387187.0		NR_029720	ENSMUSG00000065523	Mir192	Mirn192|mir-192|mmu-mir-192	microRNA 192	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-28048119-2	chr3	28048019	28048219	+	593.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001164056, exon 11 of 27)	exon (NM_001164056, exon 11 of 27)	63948.0	NM_008875	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-37370614-4	chr19	37370516	37370716	+	993.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur3|SINE|Alu	-5787.0	NM_010615	16551.0	Mm.42203	NM_010615	ENSMUSG00000012443	Kif11	Eg5|Kif8|Kifl1|Knsl1	kinesin family member 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-87764277-2	chr3	87764177	87764377	+	909.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_152799, intron 1 of 24)	intron (NM_152799, intron 1 of 24)	4676.0	NM_001289600	73182.0	Mm.158962	NM_028460	ENSMUSG00000028073	Pear1	3110045G13Rik|Jedi-1|Megf12	platelet endothelial aggregation receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-56734170-4	chr19	56734047	56734247	+	978.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11775.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-137412274-2	chr7	137412174	137412374	+	695.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-1518.0	NM_029886	77252.0	Mm.29184	NM_029886	ENSMUSG00000040139	9430038I01Rik	-	RIKEN cDNA 9430038I01 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-163996168-2	chr2	163996068	163996268	+	569.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_018753, intron 1 of 5)	intron (NM_018753, intron 1 of 5)	971.0	NM_018753	54401.0	Mm.34319	NM_018753	ENSMUSG00000018326	Ywhab	1300003C17Rik|14-3-3b	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-147938341-4	chr4	147938259	147938459	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1583.0	NM_011122	18822.0	Mm.23951	NM_011122	ENSMUSG00000019055	Plod1	2410042F05Rik|AI854890|AV007929|Lh1|Plod	procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-76474661-4	chr11	76474552	76474752	+	887.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346670, intron 3 of 21)	PB1|SINE|Alu	-6187.0	NM_001291186	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	3.13181930629581	1.92683169530596	2.69079278831466	2.91819591028943	3.156640223011	2.80368791302447	2.58572936611458	3.09810500943701	0.341148444014054	0.632879926181963	0.982230082053879
Merged-chr9-114887858-3	chr9	114887744	114887944	+	627.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-43692.0	NM_027294	70031.0	Mm.150064	NM_027294	ENSMUSG00000041012	Cmtm8	2700018N07Rik|AA408515|Cklfsf8	CKLF-like MARVEL transmembrane domain containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-71149727-3	chr6	71149600	71149800	+	887.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5320.0	NM_178413	232078.0	Mm.37547	NM_178413	ENSMUSG00000054474	Thnsl2	BC051244|TSH2	threonine synthase-like 2 (bacterial)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-23272989-4	chr16	23272831	23273031	+	965.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252505, intron 2 of 7)	intron (NM_001252505, intron 2 of 7)	-17539.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-18630628-4	chr19	18630520	18630720	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017375, intron 1 of 9)	intron (NM_017375, intron 1 of 9)	1193.0	NM_017375	20409.0	Mm.172222	NM_017375	ENSMUSG00000024725	Ostf1	C78236|SH3P2|Sh3d3	osteoclast stimulating factor 1	protein-coding	4.92551140617178	5.0862880331156	4.89251566554892	5.12455972877899	4.80004380042441	4.94749816859188	4.92709641370892	5.4288297346771	0.0465320759288563	0.883333753748326	0.998431161219273
Merged-chr11-93980022-4	chr11	93979923	93980123	+	961.0166630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11502.0	NM_008704	18102.0	Mm.439702	NM_008704	ENSMUSG00000037601	Nme1	AL024257|NDPK-A|NM23-M1|NM23A	NME/NM23 nucleoside diphosphate kinase 1	protein-coding	-0.554459396759707	-0.537088357358106	0.603949874171847	-0.547086493046679	-0.553354678371831	-0.535832126319626	-0.322646613017806	-0.546317799593293	-2.9448648930602	0.259054174086748	1
Merged-chr16-31294000-4	chr16	31293885	31294085	+	963.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18708.0	NM_025800	66849.0	Mm.291593	NM_025800	ENSMUSG00000047714	Ppp1r2	0610025N14Rik|2310007G06Rik|4930440J04Rik|5430408E15Rik|D16Ertd248e|I-2|IPP-2	protein phosphatase 1, regulatory (inhibitor) subunit 2	protein-coding	1.32997563912703	0.83047571426278	1.45404700309474	0.995207746495615	1.23117593849173	1.52416772303432	0.820494803849165	1.70774926071251	0.742678941131158	0.583397428771038	0.966599221005409
Merged-chr1-84148015-4	chr1	84147898	84148098	+	943.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003948, intron 2 of 2)	intron (NM_001003948, intron 2 of 2)	70963.0	NR_105771	102465181.0		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-109706996-4	chr8	109706830	109707030	+	761.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286393, intron 2 of 7)	intron (NM_001286393, intron 2 of 7)	911.0	NM_029468	75871.0	Mm.180410	NM_029468	ENSMUSG00000031728	Zfp821	4930566A11Rik|Znf821	zinc finger protein 821	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-14163225-4	chr16	14163136	14163336	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023317)	promoter-TSS (NM_023317)	-39.0	NM_023317	67203.0	Mm.24105	NM_023317	ENSMUSG00000022678	Nde1	2810027M15Rik|AU042936|AW822251|Nude|mNudE	nudE neurodevelopment protein 1	protein-coding	6.33156525577688	6.2617026417214	6.4049672266438	6.10352305064862	6.18814407921855	5.89480037578299	5.50638604236647	5.83949729160065	-0.433100878947367	0.0614603482471233	0.367964699735022
Merged-chr6-125651533-3	chr6	125651427	125651627	+	781.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011708, intron 34 of 51)	intron (NM_011708, intron 34 of 51)	-38892.0	NM_153589	243634.0	Mm.333398	NM_153589	ENSMUSG00000038115	Ano2	BC033409|Tmem16b	anoctamin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-92100337-2	chr6	92100237	92100437	+	599.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347342, intron 1 of 14)	intron (NM_001347342, intron 1 of 14)	7904.0	NM_001347342	22026.0	Mm.87062	NM_011630	ENSMUSG00000005893	Nr2c2	TAK1|Tr4|mKIAA4145	nuclear receptor subfamily 2, group C, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-42876626-4	chr17	42876519	42876719	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009847)	promoter-TSS (NM_009847)	-195.0	NM_009847	12488.0	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding	6.94375531137999	6.79773723604055	6.99869836802706	6.60353416592878	6.64097780557494	6.45628472855985	7.02715062870061	5.71645279302811	-0.330254723657973	0.167167587939842	0.633286287152144
Merged-chr2-124711232-4	chr2	124711124	124711324	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57643.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-134644191-4	chr2	134644078	134644278	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029148)	promoter-TSS (NM_029148)	-57.0	NM_029148	52837.0	Mm.264096	NM_029148	ENSMUSG00000034723	Tmx4	2810417D04Rik|4930500L08Rik|AI843224|AW046784|D2Bwg1356e|Txndc13|mKIAA1162	thioredoxin-related transmembrane protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26781024-4	chr17	26780941	26781141	+	839.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172149)	promoter-TSS (NM_172149)	-38.0	NM_172149	224630.0	Mm.21795	NM_172149	ENSMUSG00000024191	Bnip1	2010005M06Rik|5930429G21Rik|Sec20	BCL2/adenovirus E1B interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-86886543-2	chr12	86886443	86886643	+	685.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MamRep488|DNA|hAT-Tip100	-1729.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-57902416-2	chr4	57902316	57902516	+	560.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13848.0	NM_178727	242484.0	Mm.23214	NM_178727	ENSMUSG00000052117	D630039A03Rik	-	RIKEN cDNA D630039A03 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-119348458-2	chr6	119348358	119348558	+	804.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001362214, intron 9 of 11)	intron (NM_001362214, intron 9 of 11)	-17692.0	NM_172492	211187.0	Mm.121498	NM_172492	ENSMUSG00000055003	Lrtm2	A230084J22|AI841794	leucine-rich repeats and transmembrane domains 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191328120-4	chr1	191328070	191328270	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025864, intron 1 of 7)	intron (NM_025864, intron 1 of 7)	2205.0	NM_025864	66950.0	Mm.236300	NM_025864	ENSMUSG00000026627	Tmem206	2310028N02Rik|AI118576	transmembrane protein 206	protein-coding	5.40677128642787	4.85094722806342	4.38461800166617	4.94137581788516	5.00458846433313	4.9751206008932	4.86846791144023	4.89102084762504	-0.0223611030885665	0.947528521029345	0.998431161219273
Merged-chr12-87260683-4	chr12	87260544	87260744	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_134044, exon 3 of 19)	exon (NM_134044, exon 3 of 19)	3600.0	NM_134044	104799.0	Mm.208750	NM_134044	ENSMUSG00000021038	Vipas39	6720456H09Rik|9330175H22Rik|AI413782|SPE-39|Spe39|Vipar|hSPE-39	VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-122557187-4	chr6	122557100	122557300	+	951.966675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009645, intron 1 of 4)	intron (NM_009645, intron 1 of 4)	3391.0	NM_009645	11628.0	Mm.391503	NM_009645	ENSMUSG00000040627	Aicda	Aid|Arp2	activation-induced cytidine deaminase	protein-coding	1.50941204618908	1.39596782046035	0.918789574852397	2.37164272960654	1.99222174999264	0.943317851786286	1.52335268205332	1.1304656823551	-0.607521871051616	0.631473361927489	0.982079922850444
Merged-chr18-84091728-4	chr18	84091625	84091825	+	934.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146090, intron 1 of 1)	intron (NM_146090, intron 1 of 1)	3567.0	NM_146090	225791.0	Mm.147052	NM_146090	ENSMUSG00000049090	Zadh2	C530046K17Rik|PTGR-3|Pthr3	zinc binding alcohol dehydrogenase, domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120698612-2	chr8	120698512	120698712	+	558.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30292.0	NM_001293559	12857.0	Mm.386758	NM_009941	ENSMUSG00000031818	Cox4i1	AL024441|COX|COX IV-1|COXIV|Cox4|Cox4a|IV-1	cytochrome c oxidase subunit 4I1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-23975225-4	chr5	23975129	23975329	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053090, intron 10 of 10)	intron (NM_053090, intron 10 of 10)	55083.0	NM_001310471	84652.0	Mm.304976	NM_053090	ENSMUSG00000028995	Fam126a	AB030242|Drctnnb1a	family with sequence similarity 126, member A	protein-coding	5.3635655225332	5.57820122735756	5.58655764607529	5.37257437794208	5.30369707096229	5.8093131453264	5.62307966919648	5.57946441271751	0.122820057144233	0.643117307883014	0.982823301118608
Merged-chr11-63908693-4	chr11	63908582	63908782	+	815.991699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018805, intron 1 of 1)	ORR1E|LTR|ERVL-MaLR	13602.0	NM_018805	54710.0	Mm.274426	NM_018805	ENSMUSG00000070407	Hs3st3b1	3-OST-3B|3OST3B1|3Ost3b|AU041882|AW536289|Hs3st3b|m3-OST-3B	heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	protein-coding	3.18650403415087	4.42640725102725	3.45167575595541	2.98192101756353	3.72709759341027	3.0727648833983	2.97367404683675	3.52856324111271	-0.427449157947815	0.475600202423504	0.927343103251982
Merged-chr7-123397573-4	chr7	123397457	123397657	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025304, intron 1 of 10)	intron (NM_025304, intron 1 of 10)	-10260.0	NM_001355050	30949.0	Mm.260527	NM_025304	ENSMUSG00000030763	Lcmt1	AL033290|LCMT-1|Lcmt	leucine carboxyl methyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-149959364-2	chr1	149959264	149959464	+	623.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008869, intron 1 of 17)	intron (NM_008869, intron 1 of 17)	1926.0	NM_008869	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-93006415-2	chr1	93006315	93006515	+	817.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177587)	promoter-TSS (NM_177587)	81.0	NM_177587	208760.0	Mm.235537	NM_177587	ENSMUSG00000045091	Aqp12	AB084104|mAQP12	aquaporin 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-87204996-2	chr11	87204896	87205096	+	757.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_197987, intron 19 of 23)	L1MB7|LINE|L1	77921.0	NM_197987	68729.0	Mm.17436	NM_197987	ENSMUSG00000018548	Trim37	1110032A10Rik|2810004E07Rik|AI848587|AU043018|MUL|TEF3|mKIAA0898	tripartite motif-containing 37	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125040457-3	chr6	125040355	125040555	+	864.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133345, intron 1 of 7)	intron (NM_133345, intron 1 of 7)	607.0	NM_133345	28019.0	Mm.262547	NM_133345	ENSMUSG00000030330	Ing4	D6Wsu147e|D6Xrf92|p29ING4	inhibitor of growth family, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-100734253-4	chr9	100734172	100734372	+	988.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009282, intron 3 of 33)	intron (NM_009282, intron 3 of 33)	90824.0	NM_001357265	20842.0	Mm.42135	NM_009282	ENSMUSG00000037286	Stag1	AU045003|SA-1|Scc3	stromal antigen 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123017427-2	chr5	123017327	123017527	+	809.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_175423, intron 1 of 1)	intron (NM_175423, intron 1 of 1)	2353.0	NM_175423	109305.0	Mm.218582	NM_175423	ENSMUSG00000049686	Orai1	D730049H07Rik|Tmem142a|orai-1	ORAI calcium release-activated calcium modulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-51606411-4	chr6	51606306	51606506	+	930.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61113.0	NM_001361577	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-36271942-3	chr2	36271861	36272061	+	771.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41535.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-109394972-4	chr11	109394875	109395075	+	877.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010303, intron 3 of 3)	intron (NM_010303, intron 3 of 3)	-30971.0	NM_025275	13929.0	Mm.211850	NM_025275	ENSMUSG00000020610	Amz2	AA408420|ESTM12|X83328	archaelysin family metallopeptidase 2	protein-coding	1.5404003015605	0.784986745917233	0.768873118387188	1.90041122687406	1.72621453735971	0.788565671663772	1.60692232616125	0.758400586698976	-0.157705040872372	0.917423252470169	0.998431161219273
Merged-chr8-123065028-2	chr8	123064928	123065128	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153176)	promoter-TSS (NM_153176)	-480.0	NM_153176	234847.0	Mm.292075	NM_153176	ENSMUSG00000000738	Spg7	AI452278|AU015315|Cmar|PGN	SPG7, paraplegin matrix AAA peptidase subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-156010220-3	chr1	156010121	156010321	+	878.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144791, intron 6 of 6)	MTB|LTR|ERVL-MaLR	24596.0	NM_001160019	208263.0	Mm.211654	NM_144791	ENSMUSG00000026466	Tor1aip1	LAP1|Lap1B	torsin A interacting protein 1	protein-coding	2.0660834578023	2.43299705180652	1.58873087122269	1.12364627355391	1.88324398189514	2.24450528680316	2.27001476078844	1.12733445522775	0.14496262614365	0.896771082203429	0.998431161219273
Merged-chr5-32130553-2	chr5	32130453	32130653	+	614.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-5919.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-69612445-2	chr13	69612345	69612545	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175283)	promoter-TSS (NM_175283)	429.0	NM_145354	28114.0	Mm.260009	NM_145354	ENSMUSG00000021595	Nsun2	D13Wsu123e|Misu	NOL1/NOP2/Sun domain family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-150823190-4	chr2	150823088	150823288	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153781, intron 14 of 19)	ORR1F|LTR|ERVL-MaLR	19382.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-92649247-2	chr16	92649147	92649347	+	617.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111023, intron 3 of 5)	intron (NM_001111023, intron 3 of 5)	48082.0	NM_001111023	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-49428350-4	chr17	49428252	49428452	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028464)	promoter-TSS (NM_028464)	-12.0	NM_028464	56738.0	Mm.22256	NM_020042	ENSMUSG00000064120	Mocs1	3110045D15Rik|AI043170|AW536397	molybdenum cofactor synthesis 1	protein-coding	4.63120605076716	5.055409490158	5.22081339069919	5.18501039404619	5.10301651913193	4.77245725453635	4.62472644747322	4.15040592152476	-0.396914106456052	0.260655253970292	0.761775350065499
Merged-chr18-42506793-2	chr18	42506646	42506846	+	724.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-4741.0	NM_001039474	56070.0	Mm.270511	NM_001039474	ENSMUSG00000024498	Tcerg1	2410022J09Rik|2900090C16Rik|AI428505|CA150b|FBP23|FBP28|Taf2s|ca150|p144	transcription elongation regulator 1 (CA150)	protein-coding	0.993811575174953	2.12777603116657	0.903358080722871	0.877356950996131	1.00320947248025	1.46420477594381	0.910680051736939	0.663324473879275	-1.14269266009375	0.399869391226769	0.885176145862419
Merged-chr8-84154498-1	chr8	84154398	84154598	+	726.0	f1_c57bl6.idr	intron (NM_029045, intron 2 of 8)	intron (NM_029045, intron 2 of 8)	6460.0	NM_029045	74666.0	Mm.33625	NM_029045	ENSMUSG00000008129	4930432K21Rik	-	RIKEN cDNA 4930432K21 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-82538463-3	chr18	82538462	82538662	+	866.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025245, intron 3 of 3)	intron (NM_001025245, intron 3 of 3)	-15901.0	NM_001025258	17196.0	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128401797-2	chr10	128401697	128401897	+	647.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001136237)	promoter-TSS (NM_001136237)	-573.0	NM_001136237	72002.0	Mm.22983	NM_028051	ENSMUSG00000039878	Slc39a5	1810013D05Rik|2010205A06Rik|Zip5	solute carrier family 39 (metal ion transporter), member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-83899360-1	chr8	83899260	83899460	+	596.0	f1_balb.idr	promoter-TSS (NM_181039)	promoter-TSS (NM_181039)	-738.0	NM_181039	330814.0	Mm.260733	NM_181039	ENSMUSG00000013033	Adgrl1	2900070I05Rik|AI182398|CLIBA|Lec2|Lphn1|mKIAA0821	adhesion G protein-coupled receptor L1	protein-coding	-0.59218821906885	-0.404167751408691	-0.284587864955599	-0.588380909268403	-0.591624016859405	-0.399950631458139	-0.2778711837023	-0.587978272755536	0.0402502350073351	0.987384701353673	1
Merged-chr9-107541549-2	chr9	107541449	107541649	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018879)	promoter-TSS (NM_018879)	316.0	NM_019720	56368.0	Mm.24833	NM_019720	ENSMUSG00000037190	Cyb561d2	AW049681|Tsp10	cytochrome b-561 domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-30498747-3	chr3	30498603	30498803	+	984.672241	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361034, intron 1 of 16)	intron (NM_001361034, intron 1 of 16)	10972.0	NM_001361034	14013.0	Mm.56965	NM_007963	ENSMUSG00000027684	Mecom	D630039M04Rik|Evi-1|Evi1|Jbo|Mds|Mds1|Mds1-Evi1|Prdm3|Znfpr1b1	MDS1 and EVI1 complex locus	protein-coding	2.20054938563329	2.32841727586062	1.4908787707269	2.49258105649958	3.67669383251551	4.14321690723889	3.63675093539542	2.98160897420803	2.63086818221561	0.000207076814970731	0.00555408150018798
Merged-chr8-107436480-5	chr8	107436397	107436597	+	912.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025830)	promoter-TSS (NM_025830)	99.0	NM_025830	66894.0	Mm.390058	NM_025830	ENSMUSG00000031930	Wwp2	1300010O06Rik|AA690238|AIP2|AW554328	WW domain containing E3 ubiquitin protein ligase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-8636333-2	chr12	8636233	8636433	+	851.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR17B_Mm|LTR|ERVK	-37267.0	NM_177802	328059.0	Mm.46326	NM_177802	ENSMUSG00000020600	Slc7a15	Arpat	solute carrier family 7 (cationic amino acid transporter, y+ system), member 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-34797754-3	chr4	34797658	34797858	+	776.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19392.0	NM_025471	66291.0	Mm.28071	NM_025471	ENSMUSG00000028295	Smim8	1810030N24Rik|2810406B13Rik	small integral membrane protein 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-12084583-4	chr2	12084530	12084730	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-216616.0	NR_040353	338535.0	Mm.483275	NR_040353	ENSMUSG00000086843	E030013I19Rik	-	RIKEN cDNA E030013I19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-164864080-2	chr2	164863980	164864180	+	670.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-6372.0	NM_011125	18830.0	Mm.6105	NM_011125	ENSMUSG00000017754	Pltp	Bpife|OD107	phospholipid transfer protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-87802653-4	chr6	87802566	87802766	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104478, intron 1 of 2)	ORR1F|LTR|ERVL-MaLR	7091.0	NM_133717	69834.0	Mm.37380	NM_133717	ENSMUSG00000030055	Rab43	1810048P08Rik|2500004H21Rik|AW490415	RAB43, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-101712223-3	chr13	101712131	101712331	+	752.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077495, intron 2 of 15)	intron (NM_001077495, intron 2 of 15)	-19601.0	NM_001024955	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-96966366-3	chr5	96966264	96966464	+	620.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31325.0	NM_080708	140780.0	Mm.281490	NM_080708	ENSMUSG00000034663	Bmp2k	4933417M22Rik|AA673486|AV128808|BIKE	BMP2 inducible kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3898067-2	chr12	3897967	3898167	+	896.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_153743, intron 7 of 17)	B4A|SINE|B4	6323.0	NM_153743	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-98355776-2	chr13	98355676	98355876	+	581.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_008242, exon 1 of 1)	exon (NM_008242, exon 1 of 1)	1531.0	NM_008242	15229.0	Mm.347441	NM_008242	ENSMUSG00000078302	Foxd1	AI385632|BF-2|FREAC4|Hfh10|Hfhbf2	forkhead box D1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115530658-4	chr5	115530535	115530735	+	927.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011223, intron 1 of 10)	intron (NM_011223, intron 1 of 10)	23959.0	NM_133915	19303.0	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-38511425-2	chr2	38511325	38511525	+	815.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159631)	promoter-TSS (NM_001159631)	-272.0	NM_021606	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-99116085-4	chr4	99116003	99116203	+	796.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026082, intron 1 of 47)	intron (NM_026082, intron 1 of 47)	4812.0	NM_001290636	67299.0	Mm.260623	NM_026082	ENSMUSG00000028556	Dock7	3110056M06Rik|Gm430	dedicator of cytokinesis 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120567362-2	chr8	120567262	120567462	+	940.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145896, intron 5 of 15)	intron (NM_001145896, intron 5 of 15)	21713.0	NM_178856	272551.0	Mm.275910	NM_178856	ENSMUSG00000031821	Gins2	2210013I18Rik|4833427B12Rik|AI323585|Pfs2	GINS complex subunit 2 (Psf2 homolog)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-101896018-1	chr2	101895918	101896118	+	564.0	f0_balb.idr	intron (NM_029635, intron 2 of 5)	LTR16E2|LTR|ERVL	9756.0	NM_029635	76501.0	Mm.330424	NM_029635	ENSMUSG00000027163	Commd9	1810029F08Rik|AA409293	COMM domain containing 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-21995640-2	chr13	21995540	21995740	+	752.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14101.0	NM_019429	54373.0	Mm.32043	NM_019429	ENSMUSG00000006179	Prss16	AI448615|TSSP	protease, serine 16 (thymus)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80823911-4	chr7	80823753	80823953	+	763.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20522.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-5945180-4	chr18	5945065	5945265	+	951.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	190933.0	NM_029277	75415.0	Mm.239675	NM_029277	ENSMUSG00000041225	Arhgap12	2810011M08Rik	Rho GTPase activating protein 12	protein-coding	2.15877632229872	1.70839855840112	3.67583460264536	2.64649330178232	3.93010540060428	3.7548689843394	4.33378802900981	4.62312991793631	2.15146108632743	0.000707156581573589	0.0147129445070288
Merged-chr11-73323065-2	chr11	73322965	73323165	+	560.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023113, intron 1 of 5)	intron (NM_023113, intron 1 of 5)	1572.0	NM_023113	11484.0	Mm.293574	NM_023113	ENSMUSG00000020774	Aspa	Acy-2|Acy2|nur7	aspartoacylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-108032774-3	chr11	108032686	108032886	+	730.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011101, intron 5 of 16)	intron (NM_011101, intron 5 of 16)	35938.0	NR_106082	102465705.0		NR_106082	ENSMUSG00000098989	Mir7223	Gm28009|mmu-mir-7223	microRNA 7223	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132182006-2	chr4	132181906	132182106	+	704.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30250.0	NM_145393	213541.0	Mm.23998	NM_145393	ENSMUSG00000040025	Ythdf2	9430020E02Rik|HGRG8|NY-REN-2	YTH domain family 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71299896-2	chr8	71299834	71300034	+	764.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001142322, intron 2 of 39)	intron (NM_001142322, intron 2 of 39)	27220.0	NM_001142323	17925.0	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	0.222715167769878	0.237424347820186	0.232558421803638	0.869054408797304	0.22362078081127	0.238527447593956	0.845083028301728	0.620140351320716	0.533601765722989	0.800811608271533	1
Merged-chr1-39859457-3	chr1	39859358	39859558	+	606.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-12128.0	NR_040465	73426.0	Mm.396239	NR_040465	ENSMUSG00000101634	1700066B17Rik	-	RIKEN cDNA 1700066B17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90889674-2	chr2	90889574	90889774	+	783.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_026161, exon 2 of 2)	exon (NM_026161, exon 2 of 2)	3888.0	NM_026161	67445.0	Mm.258993	NM_026161	ENSMUSG00000040794	C1qtnf4	0710001E10Rik|9430004J15Rik|CTRP4	C1q and tumor necrosis factor related protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-129996303-2	chr7	129996203	129996403	+	659.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34138.0	NR_046077	100043150.0	Mm.334264	NR_046077	ENSMUSG00000108504	Gm4265	-	predicted gene 4265	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-78459334-2	chr11	78459234	78459434	+	614.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6367.0	NM_026740	52466.0	Mm.131618	NM_026740	ENSMUSG00000020829	Slc46a1	1110002C08Rik|D11Ertd18e|HCP1|Pcft	solute carrier family 46, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-3491989-3	chr5	3491897	3492097	+	959.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 5 of 7)	intron (NM_009873, intron 5 of 7)	-51836.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89246937-3	chr3	89246855	89247055	+	587.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310625, intron 2 of 4)	intron (NM_001310625, intron 2 of 4)	482.0	NM_001310625	66059.0	Mm.177991	NM_025327	ENSMUSG00000042747	Krtcap2	0610010I12Rik|Kcp2	keratinocyte associated protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-49755433-3	chr11	49755333	49755533	+	964.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38722.0	NM_013529	14584.0	Mm.24402	NM_013529	ENSMUSG00000020363	Gfpt2	AI480523|GFAT2	glutamine fructose-6-phosphate transaminase 2	protein-coding	-1.84303373260285	-1.81303463126392	-1.82210660711932	-1.82955859819738	-1.84092785115721	-1.81106869625141	-1.8200529106377	-1.54273750312762	1.50114612804783	0.670102668014672	1
Merged-chr1-159234228-2	chr1	159234128	159234328	+	700.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011931, intron 1 of 19)	B1_Mus1|SINE|Alu	2028.0	NM_011931	26374.0	Mm.328135	NM_011931	ENSMUSG00000040782	Cop1	AI316802|C80879|Rfwd2	COP1, E3 ubiquitin ligase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69516854-3	chr11	69516747	69516947	+	700.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081330, intron 8 of 85)	intron (NM_001081330, intron 8 of 85)	32261.0	NM_001081330	327954.0	Mm.247478	NM_177617	ENSMUSG00000005237	Dnah2	2900022L05Rik|4930564A01|D130094J20|D330014H01Rik|Dnahc2|Dnhd3	dynein, axonemal, heavy chain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-146108193-4	chr3	146108105	146108305	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172864)	promoter-TSS (NM_172864)	-169.0	NM_172864	242253.0	Mm.235040	NM_172864	ENSMUSG00000043020	Wdr63	4931433A13Rik|IC140|Ida7	WD repeat domain 63	protein-coding	6.65954603363954	6.50016637158782	6.8859015656258	6.31860218493078	6.02828012954048	6.10972410458645	6.28311380924964	5.76915643761324	-0.59560119885653	0.00644884572476174	0.0804410437396117
Merged-chr18-30160452-3	chr18	30160337	30160537	+	962.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-112428.0	NM_181414	225326.0	Mm.194127	NM_181414	ENSMUSG00000033628	Pik3c3	5330434F23Rik|Vps34	phosphatidylinositol 3-kinase catalytic subunit type 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-84293719-4	chr18	84293605	84293805	+	926.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033341, intron 8 of 8)	intron (NM_001033341, intron 8 of 8)	205547.0	NM_146090	225791.0	Mm.147052	NM_146090	ENSMUSG00000049090	Zadh2	C530046K17Rik|PTGR-3|Pthr3	zinc binding alcohol dehydrogenase, domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-73386011-1	chr2	73385911	73386111	+	673.0	f0_balb.idr	intron (NM_001276444, intron 1 of 15)	intron (NM_001276444, intron 1 of 15)	469.0	NM_001276443	68526.0	Mm.451014	NM_001080707	ENSMUSG00000041762	Gpr155	1110017O10Rik|DEPDC3|F730029F15Rik|PGR22	G protein-coupled receptor 155	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-100644050-4	chr5	100643921	100644121	+	817.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30235.0	NM_027978	71883.0	Mm.260661	NM_027978	ENSMUSG00000029319	Coq2	2310002F18Rik|PHB:PPT	coenzyme Q2 4-hydroxybenzoate polyprenyltransferase	protein-coding	0.472097169072136	1.15215462808602	2.0305564027875	1.18884837250011	0.677908647253509	0.522270691452888	0.748418083621239	0.494360240932499	-3.40132763059849	0.0382887509933392	0.278642398555247
Merged-chr10-21027924-2	chr10	21027826	21028026	+	890.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358561, intron 17 of 22)	intron (NM_001358561, intron 17 of 22)	-12894.0	NM_001177776	52906.0	Mm.253280	NM_026203	ENSMUSG00000019986	Ahi1	1700015F03Rik|Ahi-1|D10Bwg0629e	Abelson helper integration site 1	protein-coding	2.37246621216949	3.03537486771708	2.82662207899358	2.74572025886496	2.3930707429777	3.15821960797477	3.7941381622067	2.3769354677907	0.562078221382729	0.434268789347585	0.906411599962625
Merged-chr7-109486485-4	chr7	109486372	109486572	+	821.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181853, intron 1 of 19)	intron (NM_181853, intron 1 of 19)	7266.0	NM_001170913	330627.0	Mm.183528	NM_181853	ENSMUSG00000031026	Trim66	Kiaa0298-hp|Tif1d	tripartite motif-containing 66	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-16535464-1	chr16	16535364	16535564	+	548.0	f0_c57.idr	intron (NM_001301817, intron 1 of 16)	RMER10A|LTR|ERVL	-8053.0	NM_001301818	224014.0	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-42949776-4	chr4	42949682	42949882	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355440)	promoter-TSS (NM_001355440)	-85.0	NM_001355438	56323.0	Mm.20437	NM_019874	ENSMUSG00000036052	Dnajb5	1110058L06Rik|AI462558|Hsc40|Hsp40-3	DnaJ heat shock protein family (Hsp40) member B5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-104604888-2	chr9	104604772	104604972	+	736.166626	f0_balb.idr|f1_balb.idr	intron (NM_028719, intron 1 of 15)	intron (NM_028719, intron 1 of 15)	35389.0	NM_028719	74020.0	Mm.326240	NM_028719	ENSMUSG00000032564	Cpne4	3632411M23Rik|4933406O10Rik	copine IV	protein-coding	-1.8418762459921	-1.8125357239735	-1.82140854000656	-1.82869693527674	-1.56059678980999	-1.8106129477253	-1.81939992894326	-1.82739231600805	1.3620893379502	0.699511506488145	1
Merged-chr3-135478439-2	chr3	135478339	135478539	+	646.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7172.0	NM_027288	110173.0	Mm.280536	NM_027288	ENSMUSG00000028164	Manba	2410030O07Rik|B930014J03Rik|Bmn	mannosidase, beta A, lysosomal	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43059671-2	chr4	43059571	43059771	+	546.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081413, intron 1 of 39)	intron (NM_001081413, intron 1 of 39)	718.0	NM_001310758	22249.0	Mm.128892	NM_021468	ENSMUSG00000028456	Unc13b	Munc13-1|Munc13-2|Unc13a|Unc13h1|Unc13h2	unc-13 homolog B (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-46800715-2	chr18	46800615	46800815	+	547.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-49324.0	NM_029008	74574.0	Mm.26379	NM_029008	ENSMUSG00000024481	Lvrn	4833403I15Rik|APQ|Aqpep	laeverin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-96614893-2	chr10	96614793	96614993	+	733.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2108.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-46842448-4	chr11	46842349	46842549	+	958.2291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178759, intron 8 of 8)	(A)n|Simple_repeat|Simple_repeat	31650.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	4.88085350168874	4.40968293825579	4.13532080155429	5.65292494024733	4.85600009786877	3.71086389353017	4.35855318075199	4.67282126955023	-0.531591392791334	0.224531193310187	0.716302896348785
Merged-chr14-118950291-3	chr14	118950179	118950379	+	789.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008929, intron 1 of 11)	intron (NM_008929, intron 1 of 11)	12347.0	NM_008929	100037258.0	Mm.12616	NM_008929	ENSMUSG00000022136	Dnajc3	AA408985|AU067833|Dnajc3a|Dnajc3b|Prkri|mp58|p58|p58IPK	DnaJ heat shock protein family (Hsp40) member C3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128612847-4	chr10	128612773	128612973	+	842.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13633.0	NM_013765	27370.0	Mm.32118	NM_013765	ENSMUSG00000025362	Rps26	-	ribosomal protein S26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-85246387-1	chr1	85246287	85246487	+	594.666687	f1_balb.idr	TTS (NM_001037909)	TTS (NM_001037909)	24179.0	NM_175219	620078.0	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik	RIKEN cDNA C130026I21 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-55085199-2	chr11	55085099	55085299	+	793.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID|SINE|ID	-7068.0	NM_177471	52570.0	Mm.22361	NM_177471	ENSMUSG00000049588	Ccdc69	2210021E03Rik|D11Ertd461e	coiled-coil domain containing 69	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-65476029-4	chr5	65475932	65476132	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133697, intron 1 of 4)	intron (NM_133697, intron 1 of 4)	16803.0	NM_133697	68552.0	Mm.10709	NM_133697	ENSMUSG00000037822	Smim14	1110003E01Rik|1700127H04Rik|5430439C17Rik|MAd4	small integral membrane protein 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-7874857-2	chr9	7874757	7874957	+	588.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1687.0	NM_007464	11796.0	Mm.2026	NM_007464	ENSMUSG00000032000	Birc3	AW107670|Api1|Api2|Birc2|C-IAP2|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF49|cIAP-1|cIAP-2|cIAP1|cIAP2	baculoviral IAP repeat-containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116868834-2	chr11	116868778	116868978	+	638.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178620, intron 10 of 12)	ID_B1|SINE|B4	14878.0	NM_001361586	69900.0	Mm.348004	NM_178620	ENSMUSG00000020818	Mfsd11	2600014M03Rik	major facilitator superfamily domain containing 11	protein-coding	-0.212369232525816	-0.00204478880125149	0.472225008532336	-0.206175777337807	-0.211447625487545	-0.196527144419928	-0.20138127261778	0.338078183253546	-0.712982675311553	0.766008536014706	1
Merged-chr2-91202941-4	chr2	91202825	91203025	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007387)	promoter-TSS (NM_007387)	13.0	NM_007387	11432.0	Mm.45570	NM_007387	ENSMUSG00000002103	Acp2	Acp-2|LAP	acid phosphatase 2, lysosomal	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-162697395-2	chr1	162697295	162697495	+	695.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081290, intron 19 of 34)	intron (NM_001081290, intron 19 of 34)	-39176.0	NM_001177581	100038657.0	Mm.416999	NM_001177581	ENSMUSG00000091060	Myocos	7420461P10Rik	myocilin opposite strand	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-155974195-2	chr1	155974095	155974295	+	796.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039184)	promoter-TSS (NM_001039184)	-940.0	NM_001039184	74081.0	Mm.260247	NM_001039184	ENSMUSG00000033671	Cep350	4933409L06Rik|6430546F08Rik	centrosomal protein 350	protein-coding	2.40091811884749	1.92785017307738	1.27419619945393	1.95331840274592	1.98615833523688	1.76705450951186	2.36608861988583	2.38332182552299	0.492942833062562	0.61473829359978	0.977257714216349
Merged-chr18-56701440-2	chr18	56701340	56701540	+	749.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-6373.0	NM_010721	16906.0	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89229436-2	chr3	89229336	89229536	+	545.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013605, intron 1 of 6)	intron (NM_013605, intron 1 of 6)	380.0	NM_013605	17829.0	Mm.16193	NM_013605	ENSMUSG00000042784	Muc1	CD227|EMA|Muc-1	mucin 1, transmembrane	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-139191719-4	chr4	139191645	139191845	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1154.0	NM_009798	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-17767435-1	chr10	17767335	17767535	+	615.0	f1_c57bl6.idr	Intergenic	Intergenic	-28784.0	NM_138628	378431.0	Mm.283493	NM_138628	ENSMUSG00000039891	Txlnb	2310001N14Rik|Mdp77	taxilin beta	protein-coding	0.437023754593066	0.878340106922254	0.459496485864451	0.451135777102261	1.49136802307404	0.887223033935604	0.461868244485346	1.28210998715636	3.00337656762343	0.0944226353911205	0.475550312581511
Merged-chr15-86272418-3	chr15	86272354	86272554	+	601.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145476, intron 4 of 12)	MTD|LTR|ERVL-MaLR	-5221.0	NM_001358062	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127126827-4	chr10	127126729	127126929	+	798.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR35B_MM|LTR|ERVL	-5669.0	NM_001171026	216440.0	Mm.295246	NM_177614	ENSMUSG00000040462	Os9	4632413K17Rik|AU022351	amplified in osteosarcoma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-79128011-4	chr3	79127926	79128126	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001099624, intron 1 of 23)	intron (NM_001099624, intron 1 of 23)	16861.0	NM_001310536	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-130840065-4	chr2	130840009	130840209	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311147)	promoter-TSS (NM_001311147)	36.0	NM_029432	228602.0	Mm.271990	NM_028367	ENSMUSG00000027309	4930402H24Rik	2810487F15Rik|AI413763|C78926	RIKEN cDNA 4930402H24 gene	protein-coding	1.51659644452633	1.24213376078984	1.03033004435253	1.19044462908671	1.7995325176528	1.24866173029673	1.7678993215325	2.08654142917458	2.00986785608674	0.0975834042554012	0.485542860487823
Merged-chr19-29064709-4	chr19	29064568	29064768	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2633.0	NR_045687	100503337.0	Mm.103412	NR_045687		Gm9895	-	predicted gene 9895	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-76690872-2	chr13	76690772	76690972	+	727.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_030174, intron 3 of 20)	RMER19C|LTR|ERVK	305911.0	NM_030174	78771.0	Mm.316249	NM_030174	ENSMUSG00000021596	Mctp1	2810465F10Rik	multiple C2 domains, transmembrane 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32363049-4	chr2	32362959	32363159	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028412)	promoter-TSS (NM_028412)	49.0	NM_001252536	68379.0	Mm.170508	NM_028412	ENSMUSG00000039205	Ciz1	0610038H21Rik|2900056O04Rik|LSFR1|ZNF356	CDKN1A interacting zinc finger protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-41870268-3	chr10	41870198	41870398	+	654.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162908, intron 1 of 9)	intron (NM_001162908, intron 1 of 9)	-17141.0	NM_001013370	140742.0	Mm.139418	NM_001013370	ENSMUSG00000038332	Sesn1	1110002G11Rik|AU044290|Pa26|Sest1	sestrin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-163923580-2	chr1	163923480	163923680	+	541.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14-int|LTR|ERV1	-5520.0	NM_001286002	240880.0	Mm.389213	NM_028776	ENSMUSG00000026584	Scyl3	1200016D23Rik|6030457O16|AW214499|Pace1	SCY1-like 3 (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-108203201-4	chr9	108203105	108203305	+	937.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12822.0	NM_007567	12217.0	Mm.20425	NM_007567	ENSMUSG00000032589	Bsn	-	bassoon	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-72437621-3	chr4	72437541	72437741	+	868.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	236397.0	NR_027923	68285.0	Mm.37541	NR_027923		C630043F03Rik	AI851307	RIKEN cDNA C630043F03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129296117-2	chr2	129296017	129296217	+	693.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_181589, intron 2 of 8)	intron (NM_181589, intron 2 of 8)	1095.0	NM_181589	70466.0	Mm.45785	NM_181589	ENSMUSG00000048327	Ckap2l	2010016H04Rik|2610318C08Rik|AV070319|radmis|rdm	cytoskeleton associated protein 2-like	protein-coding	-1.50811478453619	-0.99851579554048	-1.48484165847197	-1.49312904261012	-1.50577282675516	-1.47256636097272	-1.48255773576353	-1.49164560481169	-2.24133836997777	0.518237887813808	1
Merged-chr1-8567584-1	chr1	8567484	8567684	+	778.5	f1_c57bl6.idr	intron (NM_027671, intron 14 of 20)	L1_Mus4|LINE|L1	732293.0	NM_001290393	71096.0	Mm.336395	NM_027671	ENSMUSG00000025909	Sntg1	4933426D16Rik|G1SYN|SYN4	syntrophin, gamma 1	protein-coding	0.259720655205658	0.866180298675058	1.06105140085051	1.3582780803894	0.261685843894938	0.292660308059555	0.282749099015831	0.274166624167865	-4.54350815972262	0.0171099380612149	1
Merged-chr19-40733567-2	chr19	40733433	40733633	+	845.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001304721, intron 7 of 9)	intron (NM_001304721, intron 7 of 9)	73763.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-96851703-3	chr5	96851587	96851787	+	828.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MERVK26-int|LTR|ERVK	58302.0	NM_013470	11745.0	Mm.7214	NM_013470	ENSMUSG00000029484	Anxa3	Anx3	annexin A3	protein-coding	-0.264724150261651	-0.2463806653007	0.760886696554918	-0.256967575152854	0.276442882078747	-0.245044830457283	-0.25101910497826	-0.256156422789049	-1.31579681182373	0.598132071052006	1
Merged-chr16-4707333-2	chr16	4707233	4707433	+	895.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_023646, exon 12 of 12)	3' UTR (NM_023646, exon 12 of 12)	12023.0	NM_001290763	67824.0	Mm.28451	NM_026393	ENSMUSG00000063445	Nmral1	1110025F24Rik|AI256624	NmrA-like family domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81085829-2	chr15	81085729	81085929	+	682.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001082536, intron 2 of 13)	intron (NM_001082536, intron 2 of 13)	19218.0	NM_153049	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-83668562-2	chr8	83668462	83668662	+	862.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_013641, exon 2 of 3)	exon (NM_013641, exon 2 of 3)	1918.0	NM_013641	19216.0	Mm.213000	NM_013641	ENSMUSG00000019464	Ptger1	EP1|Ptgerep1	prostaglandin E receptor 1 (subtype EP1)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-94343492-3	chr8	94343410	94343610	+	738.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019415, intron 13 of 24)	intron (NM_019415, intron 13 of 24)	14302.0	NM_001205311	20497.0	Mm.25804	NM_019415	ENSMUSG00000031766	Slc12a3	AI035291|NCC|NCCT|TSC	solute carrier family 12, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-148945825-4	chr4	148945725	148945925	+	919.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_027195)	TTS (NM_027195)	6497.0	NR_154553	108168987.0	Mm.393596	NR_154553		Gm13205	AA408865	predicted gene 13205	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44554595-3	chr7	44554494	44554694	+	838.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285519)	promoter-TSS (NM_001285519)	-629.0	NM_001285517	22260.0	Mm.968	NM_009473	ENSMUSG00000060601	Nr1h2	AI194859|LXR|LXRB|LXRBSV|LXRbeta|NER1|OR-1|RIP15|UR|Unr|Unr2	nuclear receptor subfamily 1, group H, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-131362812-4	chr7	131362699	131362899	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026655)	promoter-TSS (NM_026655)	-73.0	NR_152380	68277.0	Mm.121122	NM_026655	ENSMUSG00000040177	2310057M21Rik	3110040E10Rik|AI429544	RIKEN cDNA 2310057M21 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-34792176-4	chr13	34792048	34792248	+	986.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52506.0	NM_138746	108161.0	Mm.41991	NM_138746	ENSMUSG00000038246	Fam50b	D0H6S2654E|X5L|XAP-5-like	family with sequence similarity 50, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70686682-2	chr11	70686582	70686782	+	886.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001190379, intron 1 of 20)	intron (NM_001190379, intron 1 of 20)	1423.0	NM_001190376	216874.0	Mm.473726	NM_178116	ENSMUSG00000040712	Camta2	Kiaa0909-hp|mKIAA0909	calmodulin binding transcription activator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-14988068-1	chr17	14987968	14988168	+	642.0	f0_balb.idr	intron (NM_001123370, intron 9 of 11)	intron (NM_001123370, intron 9 of 11)	9204.0	NM_001123370	100041574.0	Mm.393767	NM_001123370	ENSMUSG00000036552	9030025P20Rik	D17Zt9e	RIKEN cDNA 9030025P20 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-74867028-4	chr17	74866940	74867140	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-138489.0	NM_019919	268977.0	Mm.269747	NM_019919	ENSMUSG00000001870	Ltbp1	9430031G15Rik|9830146M04|Ltbp-1|Ltbp1L|TGF-beta1-BP-1|Tgfb|b2b1000Clo	latent transforming growth factor beta binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-149665203-4	chr4	149665097	149665297	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029837, intron 2 of 23)	intron (NM_001029837, intron 2 of 23)	-1881.0	NM_001164052	18707.0	Mm.229108	NM_008840	ENSMUSG00000039936	Pik3cd	2410099E07Rik|2610208K16Rik|AW545373|p110delta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-100588331-4	chr5	100588226	100588426	+	997.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16121.0	NM_139198	231507.0	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131915878-4	chr1	131915760	131915960	+	961.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145804, intron 1 of 6)	intron (NM_001145804, intron 1 of 6)	5402.0	NM_175294	98415.0	Mm.246869	NM_175294	ENSMUSG00000026434	Nucks1	2700010L10Rik|8430423A01Rik|AI647518|C78391|Nucks	nuclear casein kinase and cyclin-dependent kinase substrate 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-89985411-4	chr11	89985299	89985499	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316372, intron 4 of 4)	intron (NM_001316372, intron 4 of 4)	17495.0	NM_008796	18559.0	Mm.5062	NM_008796	ENSMUSG00000020553	Pctp	PC-TP|StarD2	phosphatidylcholine transfer protein	protein-coding	-0.294083384950798	-0.277963382818132	0.430175288204581	-0.287290034214969	-0.293070061983337	-0.276782190008417	0.44311158986884	-0.286577643912737	0.0410571026119648	0.987250810110592	1
Merged-chr16-16146821-4	chr16	16146709	16146909	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146068)	promoter-TSS (NM_146068)	42.0	NM_001355731	224008.0	Mm.244703	NM_146068	ENSMUSG00000041974	Spidr	2310008H04Rik|Kiaa0146	scaffolding protein involved in DNA repair	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-21045672-4	chr5	21045586	21045786	+	930.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011203, intron 1 of 17)	MTD|LTR|ERVL-MaLR	10225.0	NM_001356591	19248.0	Mm.319117	NM_011203	ENSMUSG00000028771	Ptpn12	P19-PTP|PTP-P19|PTP-PEST|PTPG1	protein tyrosine phosphatase, non-receptor type 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84256694-2	chr8	84256604	84256804	+	656.0	f0_c57.idr|f1_balb.idr	intron (NM_026423, intron 1 of 4)	intron (NM_026423, intron 1 of 4)	620.0	NM_026423	67873.0	Mm.278085	NM_026423	ENSMUSG00000004996	Mri1	2410018C20Rik	methylthioribose-1-phosphate isomerase 1	protein-coding	1.22602165439445	2.28240565253612	2.20415787097039	2.01394343142249	1.6351830200003	2.72694599600314	2.44742362612237	2.37055366928451	0.86376213874381	0.367700459543646	0.862661267523493
Merged-chr1-36927790-4	chr1	36927690	36927890	+	982.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018872, intron 1 of 40)	intron (NM_018872, intron 1 of 40)	11737.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-61101801-2	chr1	61101701	61101901	+	595.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16C|LTR|ERVL	123887.0	NM_017480	54167.0	Mm.42044	NM_017480	ENSMUSG00000026009	Icos	AILIM|CCLP|CRP-1|H4|Ly115	inducible T cell co-stimulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-36861094-2	chr3	36860994	36861194	+	834.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-2012.0	NM_172679	229227.0	Mm.207907	NM_172679	ENSMUSG00000037270	4932438A13Rik	4732443H21|B830039D19Rik|D630029K19Rik|FSA|Kiaa1109|Tweek	RIKEN cDNA 4932438A13 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46769538-4	chr8	46769468	46769668	+	944.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152560, intron 1 of 7)	ORR1E|LTR|ERVL-MaLR	29823.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-72694145-2	chr11	72694062	72694262	+	654.75	f0_balb.idr|f0_c57.idr	intron (NM_009671, intron 1 of 24)	ORR1C2|LTR|ERVL-MaLR	4160.0	NM_009671	11736.0	Mm.10313	NM_009671	ENSMUSG00000020790	Ankfy1	Ankhzn|ZFYVE14|mKIAA1255	ankyrin repeat and FYVE domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-95791062-4	chr7	95790968	95791168	+	927.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-380176.0	NM_001310762	23966.0	Mm.254610	NM_011858	ENSMUSG00000048078	Tenm4	Doc4|ELM2|Odz4|R75022|Ten-m4|l(7)-3Rn|l7Rn3|mKIAA1302	teneurin transmembrane protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-62863015-1	chr4	62862915	62863115	+	796.0	f1_c57bl6.idr	Intergenic	Intergenic	-102559.0	NM_028326	72701.0	Mm.26479	NM_028326	ENSMUSG00000028358	Zfp618	2810031P15Rik|2810040O04Rik|AI415580|AI505139|D430033D05Rik|Nedd10|Znf618|bM257P7.1	zinc finger protein 618	protein-coding	-1.56355737717652	-1.81244775989375	-1.82128546162293	-1.82854501295842	-1.83962066705452	-1.81053259306168	-1.81928479966835	-1.82724555674025	-1.28500227969968	0.715751224811686	1
Merged-chr10-95684902-4	chr10	95684794	95684994	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB3|LINE|L1	-120748.0	NM_001358996	71207.0	Mm.24397	NM_027722	ENSMUSG00000020029	Nudt4	4933436C10Rik|DIPP-2|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P	nudix (nucleoside diphosphate linked moiety X)-type motif 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117876675-4	chr10	117876563	117876763	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30689.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-81370229-2	chr13	81370129	81370329	+	932.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 83 of 89)	intron (NM_054053, intron 83 of 89)	262915.0	NM_054053	110789.0	Mm.288694	NM_054053	ENSMUSG00000069170	Adgrv1	Frings|Gpr98|Mass1|Mgr1|VLGR1	adhesion G protein-coupled receptor V1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-70287503-4	chr10	70287397	70287597	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42221.0	NM_025807	66859.0	Mm.19325	NM_025807	ENSMUSG00000037762	Slc16a9	1200003C15Rik|4930425B13Rik|AI552636	solute carrier family 16 (monocarboxylic acid transporters), member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65827757-4	chr9	65827678	65827878	+	999.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172536)	promoter-TSS (NM_172536)	-214.0	NM_172536	214812.0	Mm.139231	NM_172536	ENSMUSG00000040524	Zfp609	9830165N24|BC016271|Znf609|mKIAA0295	zinc finger protein 609	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25285188-2	chr7	25285088	25285288	+	900.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_027882, exon 3 of 20)	exon (NM_027882, exon 3 of 20)	3009.0	NM_027882	71722.0	Mm.28833	NM_027882	ENSMUSG00000005442	Cic	1200010B10Rik|mKIAA0306	capicua transcriptional repressor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-66816680-2	chr10	66816580	66816780	+	700.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C|LTR|ERVK	103704.0	NR_138560	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-41004390-2	chr10	41004290	41004490	+	822.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	67900.0	NM_199058	140741.0	Mm.290693	NM_199058	ENSMUSG00000046922	Gpr6	AI852874|Gm233	G protein-coupled receptor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-58991334-1	chr15	58991234	58991434	+	547.0	f0_balb.idr	intron (NM_144800, intron 3 of 14)	intron (NM_144800, intron 3 of 14)	57524.0	NM_023172	66218.0	Mm.322294	NM_023172	ENSMUSG00000022354	Ndufb9	1190008J14Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10838649-2	chr19	10838549	10838749	+	688.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-3895.0	NM_023044	65221.0	Mm.27387	NM_023044	ENSMUSG00000024737	Slc15a3	Ci1|cI-1	solute carrier family 15, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-55302686-4	chr12	55302602	55302802	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025373)	promoter-TSS (NM_025373)	65.0	NM_025373	66132.0	Mm.383213	NM_025373	ENSMUSG00000021023	1110008L16Rik	Kiaa0391|Mrpp3|mKIAA0391	RIKEN cDNA 1110008L16 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-67782455-2	chr18	67782355	67782555	+	650.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360934, intron 2 of 8)	PB1D10|SINE|Alu	7579.0	NM_028112	72124.0	Mm.307315	NM_028112	ENSMUSG00000079614	Seh1l	2610007A16Rik|AW540070|SEC13L|SEH1A|SEH1B|Seh1	SEH1-like (S. cerevisiae	protein-coding	0.732906756765523	0.572988419498502	0.554196718475367	1.42127853758389	1.44282965002445	0.577130615323513	0.558401702024358	2.34542959017348	1.93054355480598	0.215891726284788	0.706180188649098
Merged-chr5-139482041-2	chr5	139481941	139482141	+	787.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001159908, exon 3 of 7)	exon (NM_001159908, exon 3 of 7)	2450.0	NM_133349	100494.0	Mm.24521	NM_133349	ENSMUSG00000053581	Zfand2a	AA407930|AU016206|Airap	zinc finger, AN1-type domain 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-112989660-2	chr13	112989560	112989760	+	662.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081062, exon 3 of 3)	exon (NM_001081062, exon 3 of 3)	1858.0	NM_001081062	218630.0	Mm.25457	NM_001081062	ENSMUSG00000042417	Ccno	C86987|Ccnu|E130318K11|UDG2|Ung2	cyclin O	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-16233749-4	chr9	16233626	16233826	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080814, intron 2 of 24)	MTC|LTR|ERVL-MaLR	144505.0	NM_001080814	270120.0	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT atypical cadherin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-6715883-4	chr2	6715796	6715996	+	987.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110232, intron 4 of 15)	intron (NM_001110232, intron 4 of 15)	5766.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-111053468-3	chr9	111053464	111053664	+	693.133362	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	IMPB_01|Satellite|Satellite	3680.0	NM_001302377	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-60006191-2	chr17	60006091	60006291	+	583.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	-992869.0	NM_026497	67993.0	Mm.36507	NM_026497	ENSMUSG00000024228	Nudt12	0610016O18Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-149221031-3	chr3	149220986	149221186	+	936.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53651.0	NR_040591	381482.0	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-79146492-4	chr11	79146381	79146581	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013571)	promoter-TSS (NM_013571)	-8.0	NM_013571	16706.0	Mm.4745	NM_013571	ENSMUSG00000018334	Ksr1	AW492498|B-KSR1|D11Bhm183e|D11Bhm184e|Ksr|RSU2|hb|mKSR1	kinase suppressor of ras 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-106910337-4	chr4	106910228	106910428	+	998.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1142.0	NM_198438	72475.0	Mm.195635	NM_023672	ENSMUSG00000061887	Ssbp3	2610021L12Rik|2610200M23Rik|5730488C10Rik|AI854733|AW551939|LAST|SSDP1	single-stranded DNA binding protein 3	protein-coding	4.02048668666707	4.6916271025326	4.34410778070311	4.47703305284398	4.05290124648205	4.62343514810816	4.37602087150527	4.49807427603811	-8.05395460889328e-05	0.999836826741184	0.999947950589669
Merged-chr7-98193995-5	chr7	98193956	98194156	+	794.788879	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081167, exon 2 of 2)	exon (NM_001081167, exon 2 of 2)	5419.0	NM_001081167	272411.0	Mm.98333	NM_001081167	ENSMUSG00000074004	B3gnt6	BC039789|Core-3|Core3	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6 (core 3 synthase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80389363-4	chr10	80389200	80389400	+	829.391663	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-1649.0	NM_198615	237400.0	Mm.268389	NM_198615	ENSMUSG00000048696	Mex3d	BC059858|Rkhd1	mex3 RNA binding family member D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-14740210-2	chr1	14740114	14740314	+	774.5	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	15752.0	NM_001360810	17681.0	Mm.5820	NM_010827	ENSMUSG00000025930	Msc	MyoR|bHLHa22	musculin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-8780639-4	chr13	8780550	8780750	+	686.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	90394.0	NM_001039389	207615.0	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-54688212-4	chr13	54688092	54688292	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146025)	promoter-TSS (NM_001146025)	8.0	NM_001146027	105239.0	Mm.25366	NM_134064	ENSMUSG00000034928	Rnf44	AI854545|mKIAA1100	ring finger protein 44	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-93551302-4	chr4	93551210	93551410	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-215799.0	NM_026954	69136.0	Mm.171558	NM_026954	ENSMUSG00000054000	Tusc1	2200001D17Rik|TSG-9	tumor suppressor candidate 1	protein-coding	2.63299719860181	2.82616439854169	3.58162552505372	3.1844101876712	3.1290350161807	3.49651628610434	3.46385679462261	3.20049959342295	0.367900488697589	0.540498256357116	0.954866069207078
Merged-chr2-163055188-1	chr2	163055088	163055288	+	653.0	f0_c57.idr	intron (NM_008652, intron 1 of 13)	CpG	553.0	NM_008652	17865.0	Mm.4594	NM_008652	ENSMUSG00000017861	Mybl2	B-Myb|Bmyb	myeloblastosis oncogene-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-114810744-2	chr5	114810644	114810844	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_027817, intron 1 of 1)	B3A|SINE|B2	3232.0	NR_027818	66236.0	Mm.268546	NR_027817	ENSMUSG00000072694	1500011B03Rik	AI415201|AV141149|AW556386	RIKEN cDNA 1500011B03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-61914006-3	chr8	61913930	61914130	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11336.0	NM_001293772	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-98963495-2	chr7	98963395	98963595	+	623.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 12 of 14)	intron (NM_178635, intron 12 of 14)	124650.0	NM_001285795	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-88574400-2	chr4	88574300	88574500	+	898.5833130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-2602.0	NM_206975	404549.0	Mm.377947	NM_206975	ENSMUSG00000095896	Ifna14	-	interferon alpha 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-87312624-1	chr17	87312524	87312724	+	583.0	f1_balb.idr	intron (NM_028639, intron 5 of 19)	intron (NM_028639, intron 5 of 19)	29738.0	NM_028639	225049.0	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-18710166-2	chr3	18710066	18710266	+	546.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-229689.0	NR_040544	73959.0	Mm.60616	NR_040544	ENSMUSG00000102699	4930433B08Rik	-	RIKEN cDNA 4930433B08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-150047348-2	chr3	150047248	150047448	+	558.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4B|LINE|L1	772611.0	NR_040591	381482.0	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-181334231-3	chr2	181334132	181334332	+	851.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001882, intron 8 of 33)	B3|SINE|B2	13426.0	NR_030710	269400.0	Mm.11333	NM_001001882	ENSMUSG00000038685	Rtel1	AI451565|AW540478|Rtel	regulator of telomere elongation helicase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-30554755-2	chr19	30554655	30554855	+	772.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5259.0	NM_010051	13380.0	Mm.214717	NM_010051	ENSMUSG00000024868	Dkk1	mdkk-1	dickkopf WNT signaling pathway inhibitor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-13624968-3	chr8	13624861	13625061	+	969.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 2 of 23)	intron (NM_009025, intron 2 of 23)	52626.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-32078423-2	chr16	32078323	32078523	+	609.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177326, intron 1 of 14)	intron (NM_177326, intron 1 of 14)	919.0	NM_177326	224105.0	Mm.234204	NM_177326	ENSMUSG00000022781	Pak2	5330420P17Rik|A130002K10Rik|AI836325|D16Ertd269e|PAK-2|mKIAA4182	p21 (RAC1) activated kinase 2	protein-coding	0.634829353775725	0.361889905924964	0.352962433093145	1.22124934486785	0.642493838286684	0.3638897614871	0.354939418034556	1.23113667373744	0.0312133283981148	0.986334423595453	1
Merged-chr19-47004267-4	chr19	47004144	47004344	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164363, intron 1 of 17)	intron (NM_001164363, intron 1 of 17)	-10454.0	NM_146100	226180.0	Mm.276251	NM_146100	ENSMUSG00000034336	Ina	AV028420|NF-66|NF66	internexin neuronal intermediate filament protein, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-137577012-5	chr6	137576938	137577138	+	630.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271588, intron 1 of 20)	intron (NM_001271588, intron 1 of 20)	-6029.0	NM_001271587	13860.0	Mm.235346	NM_007945	ENSMUSG00000015766	Eps8	AW261790	epidermal growth factor receptor pathway substrate 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-107605415-2	chr3	107605315	107605515	+	762.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007441, exon 4 of 4)	3' UTR (NM_007441, exon 4 of 4)	10384.0	NM_007441	11694.0	Mm.10112	NM_007441	ENSMUSG00000014603	Alx3	-	aristaless-like homeobox 3	protein-coding	-0.331438929609567	-0.123164254093861	0.441572330244817	-0.16021019222642	-0.3306013926943	-0.317025744029369	-0.321445568156223	-0.1573730720594	-2.77715940283121	0.230040811672436	1
Merged-chr5-65086712-4	chr5	65086593	65086793	+	889.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	-20875.0	NM_001347355	71778.0	Mm.10281	NM_175174	ENSMUSG00000054920	Klhl5	1300013C10Rik	kelch-like 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-82345519-3	chr15	82345403	82345603	+	849.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026914)	promoter-TSS (NM_026914)	-543.0	NM_026914	69029.0	Mm.260042	NM_026914	ENSMUSG00000022452	Smdt1	1500032L24Rik|Emre	single-pass membrane protein with aspartate rich tail 1	protein-coding	3.119259301284	2.53567063654495	2.08787641951314	2.21264955262096	2.99907238331942	3.07747570896093	3.07327512851956	3.89286415589722	1.3422203734463	0.0551332817692443	0.345104624927801
Merged-chr10-81465632-2	chr10	81465532	81465732	+	603.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_176954, intron 9 of 11)	intron (NM_176954, intron 9 of 11)	7499.0	NM_001311127	319586.0	Mm.152689	NM_176954	ENSMUSG00000034818	Celf5	4930565A21Rik|Brunol5	CUGBP, Elav-like family member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141737001-4	chr4	141736859	141737059	+	997.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MEc|LINE|L1	-9716.0	NM_001081408	75986.0	Mm.30032	NM_001081408	ENSMUSG00000040706	Agmat	5033405N08Rik	agmatine ureohydrolase (agmatinase)	protein-coding	2.91870824440756	2.88730212830314	3.16056923280142	2.59910541717429	2.78103025383686	2.78970640900648	1.5762312892899	3.36495147376887	-0.221849754824373	0.770788280611418	0.998431161219273
Merged-chr10-71897373-2	chr10	71897273	71897473	+	595.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	83317.0	NR_003644	108950.0	Mm.212793	NM_175390		1700049L16Rik	-	hematological and neurological expressed 1-like pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-143829579-4	chr7	143829453	143829653	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007856, intron 1 of 8)	intron (NM_007856, intron 1 of 8)	6386.0	NM_007856	13360.0	Mm.249342	NM_007856	ENSMUSG00000058454	Dhcr7	AA409147	7-dehydrocholesterol reductase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44655310-3	chr9	44655239	44655439	+	845.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17894.0	NM_001277851	58866.0	Mm.45380	NM_021481	ENSMUSG00000032098	Treh	2210412M19Rik	trehalase (brush-border membrane glycoprotein)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-95770721-4	chr4	95770623	95770823	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029347, intron 8 of 10)	intron (NM_029347, intron 8 of 10)	191302.0	NM_029347	75578.0	Mm.276098	NM_029347	ENSMUSG00000028573	Fggy	2310009E04Rik	FGGY carbohydrate kinase domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19134622-2	chr7	19134522	19134722	+	735.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175530, intron 1 of 1)	intron (NM_175530, intron 1 of 1)	14574.0	NM_026111	67369.0	Mm.234876	NM_026111	ENSMUSG00000030407	Qpctl	1810019P04Rik|BB101812|gQC	glutaminyl-peptide cyclotransferase-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-29409276-2	chr2	29409176	29409376	+	564.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290490, intron 3 of 5)	intron (NM_001290490, intron 3 of 5)	30762.0	NM_001290490	68975.0	Mm.330109	NM_026896	ENSMUSG00000026799	Med27	1500015J03Rik|2310042P07Rik|AA682045|Crsp8|D2Ertd434e	mediator complex subunit 27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-126199843-3	chr4	126199733	126199933	+	760.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356455, intron 1 of 11)	intron (NM_001356455, intron 1 of 11)	1174.0	NM_001356456	230753.0	Mm.29813	NM_146153	ENSMUSG00000043962	Thrap3	9330151F09Rik|B230333E16Rik|Trap150	thyroid hormone receptor associated protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118253445-2	chr11	118253345	118253545	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4853.0	NM_011180	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5422946-2	chr17	5422846	5423046	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027457, intron 3 of 3)	intron (NM_027457, intron 3 of 3)	-4179.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-97162477-4	chr15	97162352	97162552	+	995.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155278, intron 2 of 3)	intron (NR_155278, intron 2 of 3)	4792.0	NR_155278	102635594.0	Mm.392594	NR_155278	ENSMUSG00000116295	Gm32885	-	predicted gene, 32885	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52635545-2	chr13	52635445	52635645	+	756.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011518, intron 9 of 13)	intron (NM_011518, intron 9 of 13)	38663.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-36410281-3	chr19	36410199	36410399	+	790.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029508, intron 1 of 8)	CpG	31232.0	NM_029508	76073.0	Mm.259180	NM_029508	ENSMUSG00000024805	Pcgf5	0610009F02Rik|1110054A01Rik|5830406C17Rik|5830443C21Rik|9530023M17Rik|AI324127	polycomb group ring finger 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-8144104-4	chr17	8144043	8144243	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026611, intron 2 of 8)	intron (NM_026611, intron 2 of 8)	3645.0	NM_001083938	100037283.0	Mm.426736	NM_001083938	ENSMUSG00000095687	Rnaset2a	0610007O07Rik|4833423A10Rik|4930532K22Rik|C79750|RNASE6PL|Rnaset2	ribonuclease T2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-33323996-2	chr2	33323896	33324096	+	604.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290570, intron 3 of 16)	intron (NM_001290570, intron 3 of 16)	47498.0	NM_001290570	241308.0	Mm.274249	NM_175211	ENSMUSG00000038831	Ralgps1	5830418G11Rik|AI853783|AI854138|RALGEF2|RALGPS1A|RalGEF 2|mKIAA0351	Ral GEF with PH domain and SH3 binding motif 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-170992767-3	chr1	170992634	170992834	+	863.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-16663.0	NM_001077189	14130.0	Mm.425062	NM_010187	ENSMUSG00000026656	Fcgr2b	AI528646|CD32|F630109E10Rik|Fc[g]RII|FcgRII|Fcgr2|Fcgr2a|Fcr-2|Fcr-3|Ly-17|Ly-m20|LyM-1|Lym-1|fcRII	Fc receptor, IgG, low affinity IIb	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-107049686-2	chr5	107049586	107049786	+	593.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	85125.0	NM_001271566	12545.0	Mm.20842	NM_009863	ENSMUSG00000029283	Cdc7	AI597260|Cdc7l1|muCdc7	cell division cycle 7 (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-11679414-2	chr11	11679314	11679514	+	607.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6511.0	NM_009578	22778.0	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115119680-4	chr11	115119580	115119780	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001169153, intron 4 of 6)	intron (NM_001169153, intron 4 of 6)	14312.0	NM_001347648	246746.0	Mm.277387	NM_145634	ENSMUSG00000047798	Cd300lf	CLIM1|CLM-1|CLM1|Digr2|F730004D16Rik|IREM1|IgSF13|LMIR3|Pigr3	CD300 molecule like family member F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-50761760-4	chr15	50761660	50761860	+	940.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310481, intron 4 of 5)	intron (NM_001310481, intron 4 of 5)	127289.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	2.08068382459607	0.905860219705859	1.34272653624521	2.53925393706065	1.05749687584272	1.88772084914829	1.14530260547348	0.867344418855023	-1.66745938057734	0.188297178236847	0.666689812458891
Merged-chr4-129082910-4	chr4	129082816	129083016	+	900.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029219, intron 8 of 8)	intron (NM_029219, intron 8 of 8)	-22614.0	NM_025452	66260.0	Mm.25295	NM_025452	ENSMUSG00000028786	Tmem54	1810017F10Rik|AI507302	transmembrane protein 54	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-87108078-2	chr17	87107978	87108178	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019654, intron 1 of 2)	CpG	399.0	NM_019654	56468.0	Mm.126885	NM_019654	ENSMUSG00000037104	Socs5	1810018L08Rik|Cish5|mKIAA0671	suppressor of cytokine signaling 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5522171-3	chr17	5522069	5522269	+	878.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	GA-rich|Low_complexity|Low_complexity	29569.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-115314507-4	chr10	115314414	115314614	+	833.56665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024454, intron 1 of 6)	intron (NM_024454, intron 1 of 6)	1077.0	NM_024454	216344.0	Mm.21936	NM_024454	ENSMUSG00000020132	Rab21	9630024B22	RAB21, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-56977906-1	chr1	56977806	56978006	+	754.0	f1_c57bl6.idr	intron (NM_001358580, intron 1 of 11)	intron (NM_001358580, intron 1 of 11)	744.0	NM_001358581	212712.0	Mm.145599	NM_139146	ENSMUSG00000038331	Satb2	mKIAA1034	special AT-rich sequence binding protein 2	protein-coding	-0.256603618888565	0.260677121881342	-0.246698100927503	-0.250418805757947	-0.105529522259347	-0.24079553867763	-0.245635102455881	0.48836169011648	0.95055071771071	0.693300593637711	1
Merged-chr14-76171479-4	chr14	76171392	76171592	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60601.0	NM_013745	27275.0	Mm.21138	NM_013745	ENSMUSG00000022009	Nufip1	Nufip	nuclear fragile X mental retardation protein interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-5719456-3	chr5	5719345	5719545	+	932.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19C|LTR|ERVK	-24877.0	NM_028734	74051.0	Mm.274956	NM_028734	ENSMUSG00000015653	Steap2	4921538B17Rik|AI930049|AW045895|IPCA-1|IPCA1|PCANAP1|STAMP1|STMP	six transmembrane epithelial antigen of prostate 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98146901-2	chr11	98146801	98147001	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028149, intron 1 of 14)	intron (NM_028149, intron 1 of 14)	2715.0	NM_028149	72194.0	Mm.218350	NM_028149	ENSMUSG00000020883	Fbxl20	2610511F20Rik|4632423N09Rik|AI849362|AL117906|C86145|Fbl2|Scr|mKIAA4147	F-box and leucine-rich repeat protein 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69090874-2	chr11	69090774	69090974	+	603.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009497, exon 5 of 5)	3' UTR (NM_009497, exon 5 of 5)	2346.0	NM_009497	22318.0	Mm.28643	NM_009497	ENSMUSG00000020894	Vamp2	Syb-2|Syb2|Vamp-2|sybII	vesicle-associated membrane protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141218402-2	chr4	141218302	141218502	+	666.8000490000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081174, intron 4 of 5)	MIR3|SINE|MIR	4446.0	NM_001081174	76166.0	Mm.271064	NM_001081174	ENSMUSG00000073733	Rsg1	6330545A04Rik|Gm723|b2b2804Clo|b2b2827Clo	REM2 and RAB-like small GTPase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36083538-2	chr1	36083438	36083638	+	640.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_015818, intron 1 of 1)	intron (NM_015818, intron 1 of 1)	15138.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-10768955-3	chr16	10768835	10769035	+	675.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16601.0	NM_009896	12703.0	Mm.130	NM_009896	ENSMUSG00000038037	Socs1	Cish1|Cish7|JAB|SOCS-1|SSI-1	suppressor of cytokine signaling 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-121024878-2	chr4	121024778	121024978	+	864.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1|SINE|Alu	-7631.0	NM_133716	69780.0	Mm.271819	NM_133716	ENSMUSG00000032870	Smap2	1810031K02Rik|AA408614|Smap1l	small ArfGAP 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-53750678-1	chr18	53750578	53750778	+	659.0	f1_balb.idr	Intergenic	Intergenic	-6131.0	NM_178686	225523.0	Mm.193678	NM_178686	ENSMUSG00000048799	Cep120	A230075C01|AU016693|Ccdc100	centrosomal protein 120	protein-coding	-0.808605850418255	-0.800120914963731	-0.802915105048821	-0.648498842461609	-0.4439532871718	-0.453429611700148	-0.802300013879708	-0.804687052022746	2.03341917731014	0.470163749995924	1
Merged-chr5-31614055-4	chr5	31613948	31614148	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025796)	promoter-TSS (NM_025796)	97.0	NM_025796	66845.0	Mm.120763	NM_025796	ENSMUSG00000106918	Mrpl33	0610009M10Rik|L33mt|MRP-L33	mitochondrial ribosomal protein L33	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100757744-4	chr11	100757659	100757859	+	967.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081194, exon 2 of 17)	exon (NM_001081194, exon 2 of 17)	2019.0	NM_001081194	380728.0	Mm.297539	NM_001081194	ENSMUSG00000035355	Kcnh4	BEC2	potassium voltage-gated channel, subfamily H (eag-related), member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-48767995-4	chr2	48767884	48768084	+	972.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-46125.0	NM_007396	11480.0	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117236551-2	chr8	117236451	117236651	+	825.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-20468.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-137900771-2	chr1	137900671	137900871	+	650.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65684.0	NR_029795	735252.0		NR_029795	ENSMUSG00000065565	Mir181a-1	Mirn181a-1|Mirn213|miR-213|mir-181a-1|mmu-mir-213	microRNA 181a-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-51858037-4	chr6	51857948	51858148	+	972.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	154501.0	NM_018773	54353.0	Mm.221479	NM_018773	ENSMUSG00000059182	Skap2	2610021A10Rik|AA960083|BB137539|RA70|SKAP-HOM|Saps|Scap2|mSKAP55R	src family associated phosphoprotein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-12925887-2	chr13	12925787	12925987	+	815.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR46A|LTR|ERVK	79443.0	NM_031191	18811.0	Mm.88796	NM_031191	ENSMUSG00000079092	Prl2c2	Ghd2|MRP-1|PLF-1|Plf|Plf1	prolactin family 2, subfamily c, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-22470362-3	chr16	22470220	22470420	+	622.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346673, intron 23 of 23)	intron (NM_001346673, intron 23 of 23)	-30750.0	NM_023794	104156.0	Mm.155708	NM_023794	ENSMUSG00000013089	Etv5	1110005E01Rik|8430401F14Rik|ERM	ets variant 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-97964135-4	chr15	97964019	97964219	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252153)	promoter-TSS (NM_001252153)	-110.0	NM_001356508	380967.0	Mm.196630	NM_201359	ENSMUSG00000052369	Tmem106c	AI046681|BC046621|D15Ertd405e	transmembrane protein 106C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81519759-4	chr10	81519645	81519845	+	943.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010304, intron 1 of 6)	intron (NM_010304, intron 1 of 6)	4480.0	NM_010304	14676.0	Mm.1546	NM_010304	ENSMUSG00000034792	Gna15	G[a]15|Galpha15	guanine nucleotide binding protein, alpha 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-34100226-1	chr8	34100126	34100326	+	576.0	f1_balb.idr	intron (NM_001293759, intron 2 of 7)	intron (NM_001293759, intron 2 of 7)	7588.0	NM_001293758	22428.0	Mm.150373	NM_011722	ENSMUSG00000031516	Dctn6	AU044699|WS-3|p27	dynactin 6	protein-coding	0.486738655594424	0.542302422217354	1.83535298934296	0.510822323831225	0.490398851321239	1.64153174225075	1.76693570992288	0.513288513334219	0.758463377572584	0.817129877118509	0.998431161219273
Merged-chr11-120660667-5	chr11	120660505	120660705	+	872.179993	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175263, intron 1 of 11)	CpG-2953	232.0	NM_175263	77583.0	Mm.32839	NM_175263	ENSMUSG00000042988	Notum	5730593N15Rik	notum palmitoleoyl-protein carboxylesterase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-29360936-2	chr19	29360836	29361036	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026362, intron 1 of 5)	intron (NM_026362, intron 1 of 5)	935.0	NM_026362	67759.0	Mm.275511	NM_026362	ENSMUSG00000016495	Plgrkt	1110007H22Rik|5033414D02Rik|AI852040|Plg-R(KT)|Plg-RKT	plasminogen receptor, C-terminal lysine transmembrane protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-45780490-2	chr19	45780398	45780598	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023799, intron 1 of 15)	RSINE1|SINE|B4	3055.0	NR_151594	76055.0	Mm.122725	NM_023799	ENSMUSG00000025220	Mgea5	Hy5|Ncoat|OGA	meningioma expressed antigen 5 (hyaluronidase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-103286591-2	chr9	103286491	103286691	+	579.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027918, intron 1 of 16)	intron (NM_027918, intron 1 of 16)	1706.0	NM_027918	71775.0	Mm.18802	NM_027918	ENSMUSG00000033688	1300017J02Rik	Ica|mICA	RIKEN cDNA 1300017J02 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-74392205-4	chr1	74392127	74392327	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153088, intron 1 of 6)	CpG	618.0	NM_153088	227292.0	Mm.165042	NM_153088	ENSMUSG00000026176	Ctdsp1	GIP|NLIIF|Nif3|SCP1	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34001211-4	chr17	34001082	34001282	+	872.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347346)	promoter-TSS (NM_001347346)	-835.0	NM_001347346	14972.0	Mm.422886	NM_001001892	ENSMUSG00000061232	H2-K1	H-2K|H-2K(d)|H2-K|K-f	histocompatibility 2, K1, K region	protein-coding	2.96586839358422	3.12699733746674	3.57500198387457	3.20319764251516	2.99004473366732	2.47035620047958	3.04705168043326	2.95493924892849	-0.610313680831069	0.328225171699188	0.830597486712967
Merged-chr16-91875087-2	chr16	91874987	91875187	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010587, intron 28 of 38)	intron (NM_010587, intron 28 of 38)	56543.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-54637294-3	chr14	54637181	54637381	+	778.555542	f1_balb.idr|f1_c57bl6.idr	intron (NM_199470, intron 7 of 11)	intron (NM_199470, intron 7 of 11)	4083.0	NM_199470	239096.0	Mm.386871	NM_199470	ENSMUSG00000059674	Cdh24	1700040A22Rik	cadherin-like 24	protein-coding	1.90922382134602	1.72074666946343	3.09542648314117	2.93116866384594	2.33635329249262	2.96980879423825	3.32656467557354	1.35143337306857	0.257463099816795	0.77826557586305	0.998431161219273
Merged-chr11-119268466-4	chr11	119268345	119268545	+	994.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008064, intron 1 of 19)	intron (NM_008064, intron 1 of 19)	482.0	NM_008064	14387.0	Mm.4793	NM_008064	ENSMUSG00000025579	Gaa	E430018M07Rik	glucosidase, alpha, acid	protein-coding	1.7305072461744	1.68245768439634	1.05400670885606	1.82804519007004	1.20935552283171	1.52592019413732	2.36025515871908	1.72042878913688	0.529140977008513	0.64088585353046	0.982599433509505
Merged-chr19-50229975-2	chr19	50229875	50230075	+	647.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360457, intron 13 of 26)	intron (NM_001360457, intron 13 of 26)	448671.0	NM_001252501	58178.0	Mm.313672	NM_021377	ENSMUSG00000043531	Sorcs1	Sorcs|mSorCS	sortilin-related VPS10 domain containing receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-32758264-5	chr19	32758201	32758401	+	905.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_008960, exon 1 of 9)	5' UTR (NM_008960, exon 1 of 9)	724.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-20947933-2	chr5	20947833	20948033	+	569.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080977, intron 1 of 7)	PB1D10|SINE|Alu	-3056.0	NR_030699	320770.0	Mm.491217	NR_030699	ENSMUSG00000101013	A630072M18Rik	Aptr	RIKEN cDNA A630072M18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-11106999-2	chr8	11106899	11107099	+	765.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-98569.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-129515289-3	chr6	129515190	129515390	+	750.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081186, intron 2 of 4)	intron (NM_001081186, intron 2 of 4)	2733.0	NM_001081186	330428.0	Mm.44237	NM_001081186	ENSMUSG00000030160	Tmem52b	D630042F21Rik	transmembrane protein 52B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-10138781-2	chr14	10138681	10138881	+	769.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360141, intron 5 of 9)	PB1D10|SINE|Alu	254686.0	NR_030680	100042415.0	Mm.235938	NR_030680	ENSMUSG00000089686	Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140614202-2	chr5	140614102	140614302	+	643.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008494, exon 7 of 8)	exon (NM_008494, exon 7 of 8)	6861.0	NM_008494	16848.0	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-150747471-2	chr2	150747371	150747571	+	747.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1610.0	NM_001355068	12497.0	Mm.275524	NM_172117	ENSMUSG00000033068	Entpd6	2700026H11Rik|Cd39l2|NTPDase-6	ectonucleoside triphosphate diphosphohydrolase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135294159-3	chr4	135294059	135294259	+	675.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21399.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-73274626-3	chr2	73274532	73274732	+	688.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001005343, exon 2 of 2)	3' UTR (NM_001005343, exon 2 of 2)	2706.0	NM_001005343	381373.0	Mm.330293	NM_001005343	ENSMUSG00000068859	Sp9	-	trans-acting transcription factor 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-82932209-2	chr10	82932109	82932309	+	805.416626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1K|LTR|ERVL-MaLR	-53288.0	NM_021439	58250.0	Mm.360747	NM_021439	ENSMUSG00000034612	Chst11	1110020P09Rik|C4ST|C4ST-1|C4ST1|C4s	carbohydrate sulfotransferase 11	protein-coding	-0.341548005186802	-0.461950676844805	-0.465207319575118	-0.0758052411959477	-0.337922102115331	-0.461213633920307	-0.464490881199752	-0.0703859597097778	0.0318375429219428	0.989636970963125	1
Merged-chr7-46993279-4	chr7	46993142	46993342	+	867.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_175318, exon 6 of 6)	3' UTR (NM_175318, exon 6 of 6)	15172.0	NM_175318	101685.0	Mm.155687	NM_175318	ENSMUSG00000049516	Spty2d1	5830435K17Rik|AI852426|P16H6	SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-91117006-4	chr6	91116918	91117118	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018815)	promoter-TSS (NM_018815)	-192.0	NM_018815	54563.0	Mm.28162	NM_018815	ENSMUSG00000030091	Nup210	9830001L10|AI836801|Pom210|gp190|gp210	nucleoporin 210	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-31181956-2	chr2	31181856	31182056	+	665.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178760, intron 9 of 17)	RLTR31D_MM|LTR|ERVK	29640.0	NM_178760	277463.0	Mm.236074	NM_178760	ENSMUSG00000000194	Gpr107	9930033D15Rik|AI790205|C530034M11|mKIAA1624	G protein-coupled receptor 107	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19007122-2	chr7	19007022	19007222	+	721.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_178757)	TTS (NM_178757)	3057.0	NM_178757	272359.0	Mm.274237	NM_178757	ENSMUSG00000044030	Irf2bp1	6330414O09Rik|C530033F24	interferon regulatory factor 2 binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-18912414-3	chr8	18912311	18912511	+	890.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38460.0	NM_001286469	319581.0	Mm.111354	NM_176951	ENSMUSG00000039814	Xkr5	5430438H03Rik|XRG5	X-linked Kx blood group related 5	protein-coding	1.58646558746873	1.60853816308105	1.08499943501346	1.06225455733842	2.69707443585084	1.80830002211837	2.61183102743694	1.96436334854233	2.81207927942099	0.0109484846860066	0.116042331504158
Merged-chr8-47680515-4	chr8	47680422	47680622	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5363.0	NM_023503	69260.0	Mm.430733	NM_023503	ENSMUSG00000063049	Ing2	2810011M06Rik|Ing1l|Ing2b|P33ING2	inhibitor of growth family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-35036321-3	chr7	35036235	35036435	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008820, intron 12 of 14)	intron (NM_008820, intron 12 of 14)	20231.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-14890480-3	chr8	14890384	14890584	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012000, intron 1 of 2)	intron (NM_012000, intron 1 of 2)	1948.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3844489-3	chr12	3844428	3844628	+	873.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007872, intron 2 of 22)	intron (NM_007872, intron 2 of 22)	17716.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-29826831-2	chr19	29826731	29826931	+	773.916626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13857.0	NM_177721	240614.0	Mm.125503	NM_177721	ENSMUSG00000074909	Ranbp6	C630001B19	RAN binding protein 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-113614126-4	chr13	113614037	113614237	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130796, intron 1 of 1)	intron (NM_130796, intron 1 of 1)	4427.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-29467697-4	chr6	29467592	29467792	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025381)	promoter-TSS (NM_025381)	-91.0	NM_025381	66144.0	Mm.371614	NM_025381	ENSMUSG00000004285	Atp6v1f	1110004G16Rik	ATPase, H+ transporting, lysosomal V1 subunit F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135610586-2	chr5	135610486	135610686	+	544.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR31B2|LTR|ERVK	-22068.0	NM_001357037	215160.0	Mm.295438	NM_031398	ENSMUSG00000039917	Rhbdd2	0610011L13Rik|AI480532|Rhbdl7|Usmg1	rhomboid domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21610068-4	chr9	21609964	21610164	+	976.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1735.0	NR_003372	666043.0	Mm.247282	NR_003372		Gm7904	EG666043	predicted gene 7904	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6987687-4	chr19	6987627	6987827	+	963.357117	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001185164)	promoter-TSS (NM_001185164)	-76.0	NM_011697	22340.0	Mm.15607	NM_011697	ENSMUSG00000024962	Vegfb	VEGF-B|Vrf	vascular endothelial growth factor B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-97315717-4	chr7	97315660	97315860	+	698.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177412, intron 5 of 9)	MTC|LTR|ERVL-MaLR	10204.0	NM_001177412	244144.0	Mm.297541	NM_001177412	ENSMUSG00000035713	Usp35	Gm1088|Gm493	ubiquitin specific peptidase 35	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-139296465-4	chr7	139296325	139296525	+	762.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47943.0	NM_001098636	101631.0	Mm.334300	NM_001033206	ENSMUSG00000060260	Pwwp2b	AI594893|D7Ertd517e|D930023J19Rik|Pwwp2	PWWP domain containing 2B	protein-coding	0.626270398238136	0.670325566430575	0.65622423156994	1.41036220497793	1.33299635235529	1.75589377150204	1.47774072716434	0.647083206418455	1.90107185264909	0.229899005324418	0.723590835750883
Merged-chr6-145123108-4	chr6	145123036	145123236	+	851.694458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008511, intron 1 of 18)	intron (NM_008511, intron 1 of 18)	1397.0	NM_008511	16970.0	Mm.843	NM_008511	ENSMUSG00000030263	Lrmp	D6Int3|D6Int4|D6Int5|D6Int7|D6Int8|Jaw1	lymphoid-restricted membrane protein	protein-coding	0.603990212713826	0.156114501989468	0.150263781222281	0.67099585270637	0.283563589321536	0.15743350056742	0.151554124630165	0.773950089528636	-0.304548244904246	0.880087954921102	1
Merged-chr6-148523093-1	chr6	148522993	148523193	+	733.5	f0_balb.idr	Intergenic	Intergenic	-78741.0	NM_001347518	387314.0	Mm.137858	NM_198967	ENSMUSG00000030306	Tmtc1	Arg99|BC023818	transmembrane and tetratricopeptide repeat containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-26133412-1	chr2	26133312	26133512	+	906.0	f0_balb.idr	Intergenic	Intergenic	6131.0	NM_001256522	109299.0	Mm.389259	NM_001256521		Tmem250-ps	AI551216|C330006A16Rik	transmembrane protein 250, pseudogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-117828487-3	chr6	117828357	117828557	+	623.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12724.0	NM_001346649	232337.0	Mm.290847	NM_177684	ENSMUSG00000059689	Zfp637	AI646709|BC021601|Znf32	zinc finger protein 637	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102339328-3	chr12	102339234	102339434	+	725.244446	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177620, intron 3 of 9)	MLT1H|LTR|ERVL-MaLR	55693.0	NM_001161365	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	1.96484033480954	2.81108494197412	2.59372448323006	1.39591905815086	2.51089359447817	3.30672535017265	2.48282114871494	3.67534299744425	1.50534473740264	0.0654121577680081	0.383110167914689
Merged-chr9-15302218-1	chr9	15302118	15302318	+	727.0	f0_c57.idr	promoter-TSS (NM_133732)	promoter-TSS (NM_133732)	-611.0	NM_133732	70984.0	Mm.261842	NM_133732	ENSMUSG00000031938	4931406C07Rik	-	RIKEN cDNA 4931406C07 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-99260192-2	chr10	99260092	99260292	+	577.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3039.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-120430318-3	chr1	120430219	120430419	+	900.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger7|DNA|TcMar-Tigger	74705.0	NM_010766	17167.0	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	1.00478012264054	0.649604441434711	0.604294532258884	0.111736461407913	0.104029808192016	0.125706769113447	0.118699486005625	0.11268516149574	-4.22173968608702	0.0411503772309329	1
Merged-chr19-46899505-3	chr19	46899403	46899603	+	982.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029810, intron 5 of 17)	intron (NM_029810, intron 5 of 17)	62848.0	NM_029810	76952.0	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	0.347460783745827	0.204139389132499	0.195310853308434	0.803143096831817	0.499527830693147	1.3299414888954	0.197268138392792	0.189627114279493	1.27464967719668	0.500854066080143	1
Merged-chr14-51237716-4	chr14	51237640	51237840	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18372.0	NM_053113	93726.0	Mm.153688	NM_053113	ENSMUSG00000047222	Rnase2a	Ear11	ribonuclease, RNase A family, 2A (liver, eosinophil-derived neurotoxin)	protein-coding	3.42783830695105	3.06606638661823	3.84233263353645	2.99037106224063	3.64397739275324	4.28042792036528	3.2180797163195	3.4788126101143	0.507506456464368	0.36239343534924	0.858157191576352
Merged-chr2-128816494-2	chr2	128816394	128816594	+	581.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1809.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-3711885-4	chr8	3711786	3711986	+	954.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8765.0	NM_029465	75863.0	Mm.109183	NM_029465	ENSMUSG00000074491	Clec4g	4930572L20Rik	C-type lectin domain family 4, member g	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-37439985-2	chr6	37439885	37440085	+	812.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178661, intron 1 of 11)	intron (NM_178661, intron 1 of 11)	2163.0	NM_178661	208647.0	Mm.169929	NM_178661	ENSMUSG00000038648	Creb3l2	BBF2H7|C530025K05Rik|SCIRR69	cAMP responsive element binding protein 3-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-111875977-3	chr8	111875886	111876086	+	830.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025781, intron 1 of 2)	intron (NM_025781, intron 1 of 2)	689.0	NM_025781	66817.0	Mm.345350	NM_025781	ENSMUSG00000031953	Tmem170	9030409E16Rik|AA403674|D8Bwg1414e|Tmem170a	transmembrane protein 170	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-77921102-2	chr15	77921002	77921202	+	579.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019913, intron 3 of 3)	intron (NM_019913, intron 3 of 3)	7892.0	NM_019913	56551.0	Mm.291917	NM_019913	ENSMUSG00000005354	Txn2	2510006J11Rik|AI788873|Trx2	thioredoxin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-98937475-4	chr15	98937350	98937550	+	844.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-3060.0	NM_011654	22143.0	Mm.392113	NM_011654	ENSMUSG00000023004	Tuba1b	Tuba2	tubulin, alpha 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24880845-2	chr17	24880745	24880945	+	589.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_008340, exon 2 of 2)	exon (NM_008340, exon 2 of 2)	2075.0	NM_008340	16005.0	Mm.3135	NM_008340	ENSMUSG00000046070	Igfals	ALS|Albs|mKIAA4111	insulin-like growth factor binding protein, acid labile subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-29731133-4	chr5	29731024	29731224	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4774.0	NM_001359198	23950.0	Mm.290110	NM_011847	ENSMUSG00000029131	Dnajb6	HSJ-2|Mrj|mDj4	DnaJ heat shock protein family (Hsp40) member B6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46737050-2	chr8	46736950	46737150	+	660.666626	f1_balb.idr|f1_c57bl6.idr	intron (NR_045750, intron 1 of 2)	intron (NR_045750, intron 1 of 2)	2465.0	NR_045750	100503498.0	Mm.187358	NR_045750	ENSMUSG00000097534	Gm16675	-	predicted gene, 16675	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67505557-2	chr10	67505457	67505657	+	909.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32312.0	NM_010118	13654.0	Mm.290421	NM_010118	ENSMUSG00000037868	Egr2	Egr-2|Krox-20|Krox20|NGF1-B|Zfp-25|Zfp-6	early growth response 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-102830330-2	chr14	102830230	102830430	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	152302.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-79994462-1	chr18	79994362	79994562	+	747.0	f1_balb.idr	Intergenic	L1_Mus2|LINE|L1	-52433.0	NM_053117	93737.0	Mm.24678	NM_053117	ENSMUSG00000056214	Pard6g	2410049N21Rik|Par6a	par-6 family cell polarity regulator gamma	protein-coding	2.23008454757086	3.75316736010997	3.01297524029281	3.66347889126941	3.16655650118912	3.54602161857304	3.65974885388004	3.32658392593446	0.226614427998804	0.712496100862632	0.998431161219273
Merged-chr8-128437705-2	chr8	128437605	128437805	+	649.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358959, intron 6 of 16)	intron (NM_001358959, intron 6 of 16)	78464.0	NR_035436	100316680.0		NR_035436	ENSMUSG00000084523	Mir1903	Mirn1903|mmu-mir-1903	microRNA 1903	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-105821335-2	chr5	105821235	105821435	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55233.0	NR_030777	54367.0	Mm.248876	NM_018759	ENSMUSG00000029290	Zfp326	5730470H14Rik|ZAN75|Znf326	zinc finger protein 326	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-62583419-2	chr10	62583319	62583519	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019553, intron 13 of 14)	intron (NM_019553, intron 13 of 14)	-4962.0	NM_028197	72320.0	Mm.258955	NM_028197	ENSMUSG00000036955	Kif1bp	0710007C18Rik|2510003E04Rik|KBP|mKIAA1279	KIF1 binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-37177240-4	chr9	37177068	37177268	+	821.575012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29846.0	NM_001029838	208076.0	Mm.260335	NM_148950	ENSMUSG00000035934	Pknox2	D230005H23Rik|Prep2	Pbx/knotted 1 homeobox 2	protein-coding	1.74998861095796	0.872351396236454	1.52311917193002	1.68556182364523	1.40616588855559	1.59602194023152	0.860710951115097	0.847696744902479	-1.0193437612965	0.461269792496494	0.920953234475195
Merged-chr1-36134314-2	chr1	36134214	36134414	+	788.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	9999.0	NR_105862	102465540.0		NR_105862	ENSMUSG00000098752	Mir6897	Gm27652|mmu-mir-6897	microRNA 6897	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44175998-5	chr9	44175872	44176072	+	696.633301	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007619, intron 2 of 15)	intron (NM_007619, intron 2 of 15)	41314.0	NM_001359530	84004.0	Mm.275003	NM_023061	ENSMUSG00000032135	Mcam	1-gicerin|AV025631|CD146|CD149|Muc18|s-endo|s-gicerin	melanoma cell adhesion molecule	protein-coding	-1.00134343045903	-1.23445314347098	-1.2444620711464	-1.0972199549058	-1.26014533251785	-1.23228416709048	-1.24219626931013	-1.09468840724069	-1.07557070655604	0.731890363325274	1
Merged-chr9-110653075-2	chr9	110652982	110653182	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183276, intron 1 of 53)	intron (NM_183276, intron 1 of 53)	1079.0	NM_183276	235627.0	Mm.335481	NM_183276	ENSMUSG00000056724	Nbeal2	1110014F23Rik|BC042396|mKIAA0540	neurobeachin-like 2	protein-coding	-2.18361151404719	-2.02201993626881	-2.16403530460334	-2.1710062446989	-2.18164157430194	-2.15370992785044	-2.16211418110791	-2.16975844975469	-0.683654500252594	0.846597994014493	1
Merged-chr2-53000534-4	chr2	53000448	53000648	+	936.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	142680.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-154685104-2	chr2	154685004	154685204	+	636.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029362, intron 1 of 4)	intron (NM_029362, intron 1 of 4)	28078.0	NM_029362	75608.0	Mm.262480	NM_029362	ENSMUSG00000038467	Chmp4b	2010012F05Rik|C76846|Snf7-2	charged multivesicular body protein 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-49427629-3	chr9	49427493	49427693	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172922)	promoter-TSS (NM_172922)	-572.0	NM_172922	244859.0	Mm.119994	NM_172922	ENSMUSG00000032257	Ankk1	9930020N01Rik	ankyrin repeat and kinase domain containing 1	protein-coding	3.37141171746165	3.00230740383125	2.0848694859449	3.72722690322109	4.60639209149595	4.83053503226573	4.51452671607083	5.04945381993043	2.14466320852648	1.22220087598061e-05	0.00054730997309315
Merged-chr3-90512273-1	chr3	90512173	90512373	+	577.0	f1_balb.idr	intron (NM_011309, intron 1 of 2)	intron (NM_011309, intron 1 of 2)	2057.0	NM_011309	20193.0	Mm.24662	NM_011309	ENSMUSG00000044080	S100a1	AI266795|S100|S100a	S100 calcium binding protein A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-17347944-2	chr10	17347844	17348044	+	785.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-252162.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-31557463-3	chr10	31557405	31557605	+	886.5238039999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146349, intron 1 of 5)	intron (NM_001146349, intron 1 of 5)	52220.0	NM_001146349	268291.0	Mm.295212	NM_001146349	ENSMUSG00000063760	Rnf217	AU016819|Ibrdc1	ring finger protein 217	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-146913252-3	chr6	146913117	146913317	+	885.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355728, intron 1 of 30)	intron (NM_001355728, intron 1 of 30)	24723.0	NM_026221	67533.0	Mm.103382	NM_026221	ENSMUSG00000016487	Ppfibp1	4632409B19Rik|AW214454|AW261454	PTPRF interacting protein, binding protein 1 (liprin beta 1)	protein-coding	2.45660602530573	1.3734834295527	3.21990548468066	2.38297328066696	2.1543985863792	1.38251129860311	3.24489740367956	2.39603273382473	-0.0936694546090142	0.922895300373481	0.998431161219273
Merged-chr5-123061511-4	chr5	123061329	123061529	+	996.590942	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	-14413.0	NM_001347456	74890.0	Mm.141383	NM_029112	ENSMUSG00000029477	Morn3	4930438O03Rik	MORN repeat containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117366676-3	chr8	117366573	117366773	+	857.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028941, intron 1 of 20)	intron (NM_028941, intron 1 of 20)	17503.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-21568919-2	chr19	21568819	21569019	+	649.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	83872.0	NM_025423	66206.0	Mm.272430	NM_025423	ENSMUSG00000035171	1110059E24Rik	-	RIKEN cDNA 1110059E24 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-34674731-4	chr14	34674618	34674818	+	994.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004436, intron 1 of 18)	CpG	790.0	NM_001301330	218914.0	Mm.27957	NM_001004436	ENSMUSG00000041408	Wapl	A530089A20Rik|BC037674|DIF-2|FOE|Wapal	WAPL cohesin release factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-18443636-3	chr16	18443518	18443718	+	962.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001353143, intron 8 of 16)	intron (NM_001353143, intron 8 of 16)	-16902.0	NM_001111062	12846.0	Mm.100940	NM_007744	ENSMUSG00000000326	Comt	Comt1|D16Wsu103e|D330014B15Rik	catechol-O-methyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-131218478-3	chr3	131218373	131218573	+	888.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276403, intron 11 of 11)	intron (NM_001276403, intron 11 of 11)	53628.0	NM_008212	15107.0	Mm.260164	NM_008212	ENSMUSG00000027984	Hadh	AA409008|AU019341|AW742602|HCDH|Hadhsc|Schad	hydroxyacyl-Coenzyme A dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69326187-4	chr11	69326081	69326281	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010599)	promoter-TSS (NM_010599)	-77.0	NM_010599	16499.0	Mm.232472	NM_010599	ENSMUSG00000018470	Kcnab3	C330022D06Rik|Kcnab4|mKv(beta)4	potassium voltage-gated channel, shaker-related subfamily, beta member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-102053987-1	chr11	102053887	102054087	+	729.0	f1_c57bl6.idr	intron (NM_001160711, intron 7 of 7)	intron (NM_001160711, intron 7 of 7)	12476.0	NM_001160713	52685.0	Mm.266885	NM_027987	ENSMUSG00000017309	Cd300lg	2310016B05Rik|Clm9|D11Ertd736e	CD300 molecule like family member G	protein-coding	1.36838739964746	0.813630595548509	0.249684643970168	0.242806852427919	0.232970474729908	0.485074076972891	0.251638713879795	0.597077940103322	-2.07822283775987	0.27408275630586	1
Merged-chr17-26642526-2	chr17	26642426	26642626	+	672.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026170, intron 9 of 9)	intron (NM_026170, intron 9 of 9)	-33870.0	NM_025272	11974.0	Mm.22602	NM_025272	ENSMUSG00000015575	Atp6v0e	Atp6k|Atp6v0e1|M9.2	ATPase, H+ transporting, lysosomal V0 subunit E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-73882369-4	chr17	73882255	73882455	+	871.474976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	67841.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107675905-3	chr9	107675809	107676009	+	786.233337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008140, exon 8 of 9)	exon (NM_008140, exon 8 of 9)	3683.0	NM_008140	14685.0	Mm.284853	NM_008140	ENSMUSG00000034837	Gnat1	Gnat-1|Ird1|Ird2|Tralpha|irdc|irdr|transducin	guanine nucleotide binding protein, alpha transducing 1	protein-coding	0.526663345092324	1.81523248424087	0.55463527687154	0.75148829786911	1.41627980565091	0.57073843150687	0.966332681211588	0.928953007609563	-0.194574838107633	0.901579355807195	0.998431161219273
Merged-chr14-59557208-3	chr14	59557079	59557279	+	920.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40780.0	NM_001168537	71891.0	Mm.439850	NM_027986	ENSMUSG00000021982	Cdadc1	2310010M10Rik|AI449174|AI463398|BB130816|NYD-SP15	cytidine and dCMP deaminase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-46783121-4	chr17	46782990	46783190	+	865.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025433)	promoter-TSS (NM_025433)	-434.0	NM_025433	66229.0	Mm.218533	NM_025433	ENSMUSG00000063888	Rpl7l1	1500016H10Rik	ribosomal protein L7-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-24105499-4	chr13	24105391	24105591	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026825, intron 17 of 37)	MTEa|LTR|ERVL-MaLR	-114277.0	NM_145399	214189.0	Mm.255667	NM_145399	ENSMUSG00000021337	Scgn	-	secretagogin, EF-hand calcium binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-76309344-4	chr16	76309242	76309442	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358238, intron 3 of 3)	intron (NM_001358238, intron 3 of 3)	63707.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-20348621-3	chr10	20348513	20348713	+	852.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027930, intron 2 of 6)	intron (NM_027930, intron 2 of 6)	794.0	NM_027930	71804.0	Mm.262151	NM_027930	ENSMUSG00000019992	Mtfr2	2610016C23Rik|4933412C16Rik|Dufd1|Fam54a	mitochondrial fission regulator 2	protein-coding	2.79237824688095	3.12735007499386	2.62783993136196	3.01983553944293	2.44275541187956	2.85638546430097	1.54751373547416	2.87017373741663	-0.722467358919703	0.346828024929973	0.847437850938575
Merged-chr7-40188663-1	chr7	40188563	40188763	+	832.0	f1_c57bl6.idr	Intergenic	Intergenic	-486074.0	NR_045504	71029.0	Mm.399496	NR_045504	ENSMUSG00000102004	4933402C06Rik	-	RIKEN cDNA 4933402C06 gene	ncRNA	-0.334844430405299	-0.321472775649039	0.131357035799823	-0.329235009758998	-0.186772428792279	-0.320484748747072	0.359224079295192	-0.328644587272518	0.992968704581631	0.688502294821563	1
Merged-chr3-32366378-2	chr3	32366278	32366478	+	683.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009517)	promoter-TSS (NM_009517)	-713.0	NM_009517	22401.0	Mm.35705	NM_009517	ENSMUSG00000027663	Zmat3	Wig1	zinc finger matrin type 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-58475890-2	chr16	58475790	58475990	+	710.333374	f1_balb.idr|f1_c57bl6.idr	exon (NM_018784, exon 7 of 11)	exon (NM_018784, exon 7 of 11)	47536.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-118709915-4	chr14	118709824	118710024	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4|LINE|L1	-3705.0	NM_001033336	239273.0	Mm.40537	NM_001033336	ENSMUSG00000032849	Abcc4	ABCC4-N1|D630049P08Rik|MOATB|MRP4	ATP-binding cassette, sub-family C (CFTR/MRP), member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129822849-2	chr4	129822749	129822949	+	640.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164745, intron 1 of 5)	intron (NM_001164745, intron 1 of 5)	2141.0	NM_001164745	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-70849877-4	chr17	70849783	70849983	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164076)	promoter-TSS (NM_001164076)	-93.0	NM_001164076	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59005265-3	chr15	59005182	59005382	+	826.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144800, intron 3 of 14)	intron (NM_144800, intron 3 of 14)	71472.0	NM_023172	66218.0	Mm.322294	NM_023172	ENSMUSG00000022354	Ndufb9	1190008J14Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-32501598-4	chr9	32501487	32501687	+	919.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008026, intron 1 of 8)	intron (NM_008026, intron 1 of 8)	39865.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117151929-2	chr10	117151829	117152029	+	685.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3455.0	NM_177798	327826.0	Mm.135965	NM_177798	ENSMUSG00000020170	Frs2	4732458E18|C330018A15Rik|Frs2alpha|SNT1	fibroblast growth factor receptor substrate 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70538194-2	chr14	70538096	70538296	+	683.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_145219, exon 8 of 8)	3' UTR (NM_145219, exon 8 of 8)	-7055.0	NM_180588	72549.0	Mm.46742	NM_180588	ENSMUSG00000033589	Reep4	2700029E10Rik	receptor accessory protein 4	protein-coding	1.04731058717346	1.18142025039208	3.56959411862919	2.36245925795551	2.44051401218303	1.19033467819581	2.34165045814327	2.37622473084209	-0.626933953330438	0.735841116410391	0.998431161219273
Merged-chr11-117877269-2	chr11	117877169	117877369	+	865.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3743.0	NM_027919	71776.0	Mm.3200	NM_027919	ENSMUSG00000017713	Tha1	1300017K07Rik|GLY1	threonine aldolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-46669940-2	chr13	46669840	46670040	+	599.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001033192, exon 1 of 5)	exon (NM_001033192, exon 1 of 5)	418.0	NM_001033192	97863.0	Mm.275934	NM_001033192	ENSMUSG00000069237	Fam8a1	C78339	family with sequence similarity 8, member A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81133864-3	chr10	81133757	81133957	+	901.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur2|SINE|Alu	-2414.0	NM_010731	16969.0	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-117977264-2	chr5	117977164	117977364	+	789.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346588, intron 1 of 11)	CpG	494.0	NM_001346588	231670.0	Mm.21912	NM_145564	ENSMUSG00000032898	Fbxo21	2810425J22Rik|AU016673	F-box protein 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-75008463-2	chr14	75008363	75008563	+	675.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_030568, intron 3 of 3)	MTB|LTR|ERVL-MaLR	-7564.0	NM_198642	271221.0	Mm.320280	NM_198642	ENSMUSG00000034959	Rubcnl	5031414D18Rik|Gm744|Gm911|Kiaa0226l	RUN and cysteine rich domain containing beclin 1 interacting protein like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191909346-2	chr1	191909246	191909446	+	588.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_009579, exon 2 of 2)	exon (NM_009579, exon 2 of 2)	-1819.0	NR_030669	98736.0	Mm.379232	NM_001024489	ENSMUSG00000055833	1700034H15Rik	4930557M11Rik|BB016121	RIKEN cDNA 1700034H15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-125476431-2	chr5	125476331	125476531	+	799.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_030210, intron 1 of 17)	intron (NM_030210, intron 1 of 17)	558.0	NM_030210	78894.0	Mm.431573	NM_030210	ENSMUSG00000029482	Aacs	2210408B16Rik|SUR5	acetoacetyl-CoA synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-143052784-4	chr7	143052671	143052871	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133655)	promoter-TSS (NM_133655)	21.0	NM_133655	12520.0	Mm.806	NM_133655	ENSMUSG00000037706	Cd81	Tapa-1|Tapa1|Tspan28	CD81 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-137951971-1	chr3	137951871	137952071	+	1000.0	f0_balb.idr	intron (NM_011932, intron 3 of 8)	intron (NM_011932, intron 3 of 8)	29578.0	NM_001310753	26377.0	Mm.254835	NM_011932	ENSMUSG00000028159	Dapp1	Bam32	dual adaptor for phosphotyrosine and 3-phosphoinositides 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-120558976-4	chr5	120558883	120559083	+	975.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145853, intron 3 of 27)	intron (NM_145853, intron 3 of 27)	29630.0	NM_145853	252972.0	Mm.114054	NM_145853	ENSMUSG00000032741	Tpcn1	5730403B01Rik|Tpc1|mKIAA1169	two pore channel 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-21820413-4	chr19	21820341	21820541	+	846.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033759, intron 12 of 23)	intron (NM_001033759, intron 12 of 23)	42101.0	NM_031997	83921.0	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-79398638-4	chr8	79398551	79398751	+	995.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008539, intron 1 of 6)	CpG	817.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-68459677-4	chr11	68459563	68459763	+	987.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177320, intron 1 of 18)	L1ME2|LINE|L1	27538.0	NM_177320	320207.0	Mm.244960	NM_177320	ENSMUSG00000020901	Pik3r5	AV230647|F730038I15Rik|Foap2|p101	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-31400515-3	chr9	31400405	31400605	+	559.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359654, intron 10 of 25)	intron (NM_001359654, intron 10 of 25)	14313.0	NM_001359654	235134.0	Mm.238146	NM_172766	ENSMUSG00000042185	Nfrkb	A530090G11Rik	nuclear factor related to kappa B binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140828335-2	chr5	140828235	140828435	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010302, intron 1 of 3)	intron (NM_010302, intron 1 of 3)	2096.0	NM_010302	14673.0	Mm.370185	NM_010302	ENSMUSG00000000149	Gna12	AI414047|AI504261|Galpha12	guanine nucleotide binding protein, alpha 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83323802-4	chr6	83323690	83323890	+	994.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2249.0	NM_145571	232157.0	Mm.29500	NM_145571	ENSMUSG00000043131	Mob1a	4022402H07Rik|MOB1|MOB4B|Mobk1b|Mobkl1b	MOB kinase activator 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-8865053-4	chr12	8864965	8865165	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	-56242.0	NM_008640	17775.0	Mm.30071	NM_008640	ENSMUSG00000020585	Laptm4a	AA286466|LAPTM4|MTP|Mtrp|mKIAA0108	lysosomal-associated protein transmembrane 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-8209212-4	chr6	8209121	8209321	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145374)	promoter-TSS (NM_145374)	-6.0	NM_145374	252875.0	Mm.257151	NM_145374	ENSMUSG00000042447	Mios	C81488	meiosis regulator for oocyte development	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-6430785-2	chr17	6430685	6430885	+	908.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_009342, intron 1 of 4)	intron (NM_009342, intron 1 of 4)	673.0	NM_009342	21648.0	Mm.1948	NM_009342	ENSMUSG00000096255	Dynlt1b	AGS2|Dynlt1|Tctex-1|Tctex1	dynein light chain Tctex-type 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-122294544-4	chr9	122294439	122294639	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133979)	promoter-TSS (NM_133979)	-116.0	NM_133979	102566.0	Mm.87676	NM_133979	ENSMUSG00000037949	Ano10	AI604832|Tmem16k	anoctamin 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-12340784-4	chr13	12340680	12340880	+	942.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033268)	promoter-TSS (NM_033268)	-48.0	NM_033268	11472.0	Mm.37638	NM_033268	ENSMUSG00000052374	Actn2	1110008F24Rik	actinin alpha 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128869510-2	chr2	128869403	128869603	+	643.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_024237, intron 1 of 7)	intron (NM_024237, intron 1 of 7)	5571.0	NM_024237	70370.0	Mm.5107	NM_024237	ENSMUSG00000027386	Fbln7	1600015H20Rik|AI464334|TM14	fibulin 7	protein-coding	2.33348641377249	0.993724339906188	1.82644484949037	1.76951131248501	2.04124998033982	1.45752172363647	0.978091485193413	0.960524189600455	-1.09087095999931	0.398953555939975	0.885102732944651
Merged-chr8-125224618-4	chr8	125224534	125224734	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_174854, intron 10 of 12)	intron (NM_174854, intron 10 of 12)	170439.0	NM_174854	244667.0	Mm.233504	NM_170596	ENSMUSG00000043051	Disc1	-	disrupted in schizophrenia 1	protein-coding	5.25295195251557	5.50268940338481	5.07814102489069	5.3317983389	5.1064319180878	4.97840059816533	5.3810708368384	5.07927906832561	-0.178340897879929	0.541350228011463	0.954866069207078
Merged-chr12-21336014-4	chr12	21335912	21336112	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291871, intron 11 of 18)	intron (NM_001291871, intron 11 of 18)	19620.0	NM_026347	67732.0	Mm.335830	NM_026347	ENSMUSG00000062054	Iah1	1500019E20Rik|4833421E05Rik	isoamyl acetate-hydrolyzing esterase 1 homolog	protein-coding	7.28037586481638	7.3401808781275	7.51496465717376	7.22803118942053	7.17347136862987	7.64267817098346	7.09397023319583	6.99795881928583	-0.104046919407885	0.548098879795091	0.95796208018571
Merged-chr9-45179474-4	chr9	45179376	45179576	+	958.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145403, intron 6 of 12)	intron (NM_145403, intron 6 of 12)	-16290.0	NM_001198971	408059.0	Mm.249297	NM_001198971	ENSMUSG00000091996	BC049352	SMIM35	cDNA sequence BC049352	protein-coding	3.29037571994194	3.12170617738956	2.44224089886496	3.46351937051761	3.72875895960829	3.36136494600714	3.90780596881328	3.05111738582495	0.667309186036904	0.259199537330372	0.75927260363863
Merged-chr19-8755542-2	chr19	8755442	8755642	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001167799)	TTS (NM_001167799)	1427.0	NR_132423	102640359.0	Mm.440831	NR_132423		1700023D09Rik	AV208457	RIKEN cDNA 1700023D09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-74897191-4	chr11	74897112	74897312	+	995.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177325)	promoter-TSS (NM_177325)	-132.0	NM_197943	97761.0	Mm.245894	NM_197943	ENSMUSG00000038351	Sgsm2	D630003G22Rik|R74628|Rutbc1|mKIAA0397	small G protein signaling modulator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-55024069-4	chr9	55023977	55024177	+	925.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145129, intron 3 of 5)	intron (NM_145129, intron 3 of 5)	2482.0	NM_145129	110834.0	Mm.63569	NM_145129	ENSMUSG00000032303	Chrna3	(a)3|A730007P14Rik|Acra-3|Acra3	cholinergic receptor, nicotinic, alpha polypeptide 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-16898591-4	chr6	16898439	16898639	+	991.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031198)	promoter-TSS (NM_031198)	-98.0	NM_031198	21426.0	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90448371-2	chr2	90448271	90448471	+	612.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 17 of 23)	MLT1C|LTR|ERVL-MaLR	30803.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135353265-4	chr4	135353166	135353366	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001130477)	promoter-TSS (NM_001130477)	-52.0	NM_001130477	51796.0	Mm.1963	NM_016799	ENSMUSG00000028809	Srrm1	AA407769|POP101|Srm160	serine/arginine repetitive matrix 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-91816959-2	chr12	91816859	91817059	+	583.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039089, intron 14 of 20)	intron (NM_001039089, intron 14 of 20)	-30523.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34312427-4	chr17	34312307	34312507	+	924.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010382, intron 2 of 5)	intron (NM_010382, intron 2 of 5)	6540.0	NM_010382	14969.0	Mm.22564	NM_010382	ENSMUSG00000060586	H2-Eb1	Eb|H-2Eb|H2Eb|Ia-4|Ia4	histocompatibility 2, class II antigen E beta	protein-coding	5.43614130957559	6.19368022576966	5.00837413149846	5.5206712470923	4.09042605173426	5.27188002831093	2.00909357011506	4.46621422530897	-1.46369203069844	0.127576642890921	0.55901813510261
Merged-chr11-79084988-2	chr11	79084888	79085088	+	804.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_013571, intron 1 of 17)	intron (NM_013571, intron 1 of 17)	-25152.0	NM_001348207	16706.0	Mm.4745	NM_013571	ENSMUSG00000018334	Ksr1	AW492498|B-KSR1|D11Bhm183e|D11Bhm184e|Ksr|RSU2|hb|mKSR1	kinase suppressor of ras 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-69238392-4	chr14	69238276	69238476	+	860.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46727.0	NM_026331	67712.0	Mm.293635	NM_026331	ENSMUSG00000034248	Slc25a37	1700020E22Rik|4930513O14Rik|4930526G11Rik|AI848481|C330015G08Rik|Mfrn|Mfrn1|Mscp|frascati|mitoferrin	solute carrier family 25, member 37	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-111025468-2	chr7	111025368	111025568	+	890.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-3483.0	NM_009431	22083.0	Mm.255858	NM_009431	ENSMUSG00000005609	Ctr9	AA409336|Sh2bp1|Tsbp|Tsp|mKIAA0155	CTR9 homolog, Paf1/RNA polymerase II complex component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-74506691-3	chr1	74506571	74506771	+	982.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310662)	promoter-TSS (NM_001310662)	611.0	NM_021383	58184.0	Mm.291708	NM_021383	ENSMUSG00000026174	Cnot9	2610007F23Rik|AI593551|Fl10|Rqcd1	CCR4-NOT transcription complex, subunit 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-102433135-2	chr7	102433035	102433235	+	745.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009287, intron 11 of 11)	intron (NM_009287, intron 11 of 11)	-8560.0	NM_009103	20133.0	Mm.197486	NM_009103	ENSMUSG00000030978	Rrm1	RnrM1	ribonucleotide reductase M1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-24438085-1	chr7	24437985	24438185	+	870.0	f1_c57bl6.idr	intron (NM_199013, intron 1 of 2)	intron (NM_199013, intron 1 of 2)	-2553.0	NM_001358033	210145.0	Mm.33811	NM_199013	ENSMUSG00000062028	Irgc1	F630044M05Rik|Gm1102|Gm474|Ifgge|Iigp5|Irgc	immunity-related GTPase family, cinema 1	protein-coding	0.567682952405799	0.0313297689903325	0.0259536095048325	0.441473416286964	0.659508699281282	0.0325420212007747	0.0271391368183074	0.0225316332377994	-0.45633328305184	0.838753337480664	1
Merged-chr2-91087487-4	chr2	91087362	91087562	+	741.658325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9216.0	NM_011355	20375.0	Mm.1302	NM_011355	ENSMUSG00000002111	Spi1	Dis-1|Dis1|PU.1|Sfpi-1|Sfpi1|Spi-1|Tcfpu1|Tfpu.1	spleen focus forming virus (SFFV) proviral integration oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-14676587-1	chr8	14676487	14676687	+	621.0	f0_balb.idr	intron (NM_172910, intron 4 of 15)	B4|SINE|B4	-211949.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-81484962-4	chr12	81484876	81485076	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_132134)	promoter-TSS (NR_132134)	-125.0	NR_132134	66272.0	Mm.439970	NM_025461	ENSMUSG00000091803	Cox16	1810020G14Rik|1810055I05Rik|BB388670	cytochrome c oxidase assembly protein 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-41358121-1	chr13	41358021	41358221	+	646.0	f0_balb.idr	intron (NM_001111324, intron 2 of 7)	intron (NM_001111324, intron 2 of 7)	880.0	NM_017464	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-166160843-4	chr1	166160760	166160960	+	908.474976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021610, intron 4 of 6)	intron (NM_021610, intron 4 of 6)	30639.0	NM_001360925	59290.0	Mm.46357	NM_021610	ENSMUSG00000000544	Gpa33	2010310L10Rik|2210401D16Rik|BB116197|mA33	glycoprotein A33 (transmembrane)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-147459941-4	chr5	147459847	147460047	+	925.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028291, intron 4 of 18)	intron (NM_028291, intron 4 of 18)	29791.0	NM_028291	72587.0	Mm.320469	NM_028291	ENSMUSG00000029647	Pan3	2700050F09Rik|A430027N15Rik|AU014670	PAN3 poly(A) specific ribonuclease subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-180954354-1	chr2	180954254	180954454	+	601.0	f0_balb.idr	intron (NM_001141933, intron 1 of 5)	intron (NM_001141933, intron 1 of 5)	345.0	NM_001141933	58237.0	Mm.40361	NM_021426	ENSMUSG00000027574	Nkain4	AB030182|C030019F02Rik	Na+/K+ transporting ATPase interacting 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-107285642-4	chr4	107285542	107285742	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21526.0	NM_007860	13370.0	Mm.148342	NM_007860	ENSMUSG00000034785	Dio1	5DI|D1|ITDI1|TXDI1	deiodinase, iodothyronine, type I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-17657187-2	chr14	17657087	17657287	+	569.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER45B|DNA|hAT-Tip100	-3773.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19023555-4	chr7	19023431	19023631	+	943.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026605)	promoter-TSS (NM_026605)	8.0	NM_008260	15377.0	Mm.42260	NM_008260	ENSMUSG00000040891	Foxa3	Hnf-3g|Hnf3g|Tcf-3g|Tcf3g	forkhead box A3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-104223904-3	chr12	104223831	104224031	+	697.488892	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009251, intron 3 of 6)	intron (NM_009251, intron 3 of 6)	9298.0	NM_001033335	238393.0	Mm.483584	NM_001033335	ENSMUSG00000066363	Serpina3f	2A1|BC049975	serine (or cysteine) peptidase inhibitor, clade A, member 3F	protein-coding	0.211790499349042	0.0879646076393643	0.082404025529765	0.697600592039164	0.633807475231078	0.444004168470275	0.0836302118476884	0.0788647117935853	0.229840526944604	0.911489566741342	1
Merged-chr5-130008045-1	chr5	130007945	130008145	+	647.5	f1_c57bl6.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	-4996.0	NM_001357027	110006.0	Mm.3317	NM_010368	ENSMUSG00000025534	Gusb	AI747421|Gur|Gus|Gus-r|Gus-s|Gus-t|Gus-u|Gut|asd|g	glucuronidase, beta	protein-coding	-0.773269170465148	-0.536731853074065	-1.03283113491845	-1.03706869426034	-1.03996662017948	-1.01870368359699	-1.03020260335842	-1.0367099657609	-2.78541583542897	0.373634043026092	1
Merged-chr4-6355537-4	chr4	6355463	6355663	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	AT_rich|Low_complexity|Low_complexity	-10117.0	NM_016807	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-14596503-4	chr19	14596407	14596607	+	954.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302951, intron 2 of 19)	intron (NM_001302951, intron 2 of 19)	706.0	NM_001302951	21888.0	Mm.103638	NM_011600	ENSMUSG00000024642	Tle4	5730411M05Rik|AA792082|Bce-1|Bce1|ESTM13|ESTM14|Grg4|X83332|X83333|grg-4	transducin-like enhancer of split 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-86885295-4	chr8	86885192	86885392	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030563)	promoter-TSS (NM_030563)	-34.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	4.52503616563287	3.7653380686426	4.11416097475744	4.34908760851951	4.16895624334571	5.19032240872895	5.1090068859354	4.46901408620849	0.713348888605725	0.0826628737246977	0.440062109720246
Merged-chr15-35917523-4	chr15	35917390	35917590	+	912.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177151, intron 58 of 61)	intron (NM_177151, intron 58 of 61)	20756.0	NM_053071	12864.0	Mm.548	NM_053071	ENSMUSG00000014313	Cox6c	-	cytochrome c oxidase subunit VIc	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-34460259-4	chr1	34460141	34460341	+	979.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011206, intron 1 of 14)	intron (NM_011206, intron 1 of 14)	495.0	NM_011206	19253.0	Mm.361	NM_011206	ENSMUSG00000026126	Ptpn18	FLP1|HSCF|PTP-HSCF|PTP-K1|Ptpk1	protein tyrosine phosphatase, non-receptor type 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-29526631-4	chr6	29526518	29526718	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_012057)	promoter-TSS (NM_012057)	-7.0	NM_001311083	27056.0	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-114727533-4	chr9	114727470	114727670	+	834.43335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3633.0	NM_026036	67213.0	Mm.28858	NM_026036	ENSMUSG00000032434	Cmtm6	2810051A14Rik|AA536733|Cklfsf6	CKLF-like MARVEL transmembrane domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-5100995-2	chr11	5100895	5101095	+	764.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177370, intron 3 of 8)	intron (NM_177370, intron 3 of 8)	830.0	NM_001290493	279766.0	Mm.260866	NM_177370	ENSMUSG00000034175	Rhbdd3	Ptag	rhomboid domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-85050626-4	chr16	85050566	85050766	+	814.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198825, intron 6 of 15)	intron (NM_001198825, intron 6 of 15)	78455.0	NR_045889	100038614.0	Mm.441351	NR_045889	ENSMUSG00000115518	Gm10791	-	predicted gene 10791	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-40894810-4	chr14	40894746	40894946	+	894.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1881.0	NM_177816	328381.0	Mm.235694	NM_177816	ENSMUSG00000037833	Sh2d4b	A430109M18Rik|D030001E08	SH2 domain containing 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-92565933-2	chr16	92565823	92566023	+	854.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	67776.0	NM_172469	209195.0	Mm.44747	NM_172469	ENSMUSG00000022949	Clic6	5730466J16Rik|AL022908|AW045520|CLIC1L	chloride intracellular channel 6	protein-coding	1.50519076465961	1.70283984451107	1.16956266899949	0.934827134514559	1.72197233233678	2.0567536315364	0.952699455214521	1.7148805490008	1.03539372765591	0.408187400370837	0.892172533941456
Merged-chr10-125318701-3	chr10	125318599	125318799	+	867.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358496, intron 1 of 5)	intron (NM_001358496, intron 1 of 5)	-9883.0	NM_001358915	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-52764240-4	chr1	52764146	52764346	+	983.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36888.0	NM_001357464	98682.0	Mm.491173	NM_133829	ENSMUSG00000041439	Mfsd6	2210010L05Rik|9630025I22Rik|AI836200|AW212394|MMR2	major facilitator superfamily domain containing 6	protein-coding	4.00336778972948	4.18011773916197	4.31028923999253	3.75629920796289	3.21678811798153	3.4091943302498	3.29260725163356	3.70615644418734	-0.955798849882731	0.0485113038506134	0.32062355321318
Merged-chr16-49817041-4	chr16	49816932	49817132	+	746.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-38622.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-73938597-2	chr13	73938497	73938697	+	730.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027182)	promoter-TSS (NM_027182)	786.0	NM_001308041	105246.0	Mm.278509	NM_001024508	ENSMUSG00000057649	Brd9	AL022779	bromodomain containing 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80793216-2	chr10	80793116	80793316	+	570.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_199322, intron 27 of 27)	intron (NM_199322, intron 27 of 27)	5410.0	NM_023900	78670.0	Mm.41479	NM_023900	ENSMUSG00000035278	Plekhj1	9530063M10Rik	pleckstrin homology domain containing, family J member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-61552587-2	chr8	61552487	61552687	+	587.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001293772, intron 10 of 21)	intron (NM_001293772, intron 10 of 21)	38582.0	NM_001293774	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-24503294-4	chr9	24503196	24503396	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172920)	promoter-TSS (NM_172920)	-156.0	NM_172920	244745.0	Mm.38526	NM_172920	ENSMUSG00000043067	Dpy19l1	1100001I19Rik|6030402K12|AI225861|AW558481	dpy-19-like 1 (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-91671533-2	chr12	91671433	91671633	+	601.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 4 of 6)	URR1A|DNA|hAT-Charlie	-81046.0	NM_175335	83602.0	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-56952090-2	chr9	56951990	56952190	+	905.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_178374, intron 1 of 8)	B2_Mm2|SINE|B2	1166.0	NM_178374	66069.0	Mm.220984	NM_178374	ENSMUSG00000055334	Snupn	0610031A09Rik|Rnut1|Snupn1	snurportin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-66856105-3	chr9	66856008	66856208	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173413, intron 3 of 7)	intron (NM_173413, intron 3 of 7)	-21402.0	NM_026674	68318.0	Mm.284229	NM_026674	ENSMUSG00000053040	Aph1c	0610008A10Rik|APH-1b|Aph1b	aph1 homolog C, gamma secretase subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-53868592-4	chr11	53868474	53868674	+	815.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011396, intron 7 of 9)	ID_B1|SINE|B4	-9318.0	NR_033332	622459.0	Mm.479656	NR_033332	ENSMUSG00000081769	Gm12216	602-19-115	predicted gene 12216	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-17252280-1	chr19	17252180	17252380	+	556.0	f0_c57.idr	Intergenic	Intergenic	87225.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	2.16889677361996	2.33057012620654	2.3535358141587	2.28651877971029	1.59602931535699	2.22916275585988	1.88181662295393	1.2516026172166	-1.32688634705883	0.168876385090517	0.63531908954007
Merged-chr2-34777452-12	chr2	34777344	34777544	+	956.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_022310)	TTS (NM_022310)	5354.0	NM_022310	14828.0	Mm.330160	NM_022310	ENSMUSG00000026864	Hspa5	AL022860|AU019543|Bip|D2Wsu141e|D2Wsu17e|Grp78|Hsce70|SEZ-7|Sez7|baffled|mBiP	heat shock protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-172399046-2	chr2	172398946	172399146	+	955.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080820, intron 1 of 6)	intron (NM_001080820, intron 1 of 6)	5252.0	NM_001276423	320664.0	Mm.210195	NM_001033538	ENSMUSG00000074570	Cass4	F730031O20Rik	Cas scaffolding protein family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-136224926-3	chr4	136224839	136225039	+	776.266663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001008232, intron 1 of 24)	intron (NM_001008232, intron 1 of 24)	18574.0	NM_001355698	230837.0	Mm.77788	NM_001008232	ENSMUSG00000036995	Asap3	9430088F20Rik|Ddefl1|Gm140|UPLC1	ArfGAP with SH3 domain, ankyrin repeat and PH domain 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-29173525-4	chr11	29173433	29173633	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134034, intron 1 of 15)	intron (NM_134034, intron 1 of 15)	626.0	NM_134034	104570.0	Mm.276386	NM_134034	ENSMUSG00000020463	Ppp4r3b	AW011752|AW557776|Smek2|mKIAA1387	protein phosphatase 4 regulatory subunit 3B	protein-coding	3.59522075760266	4.02355748095375	4.71572814736285	4.13812194150906	3.48463727457976	3.5452420561056	3.77719930376783	3.4109192811881	-0.873877011477514	0.0726087520986763	0.406830545305068
Merged-chr13-73471790-2	chr13	73471690	73471890	+	752.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145376, intron 1 of 13)	MTC|LTR|ERVL-MaLR	4407.0	NM_145376	210992.0	Mm.284649	NM_145376	ENSMUSG00000021608	Lpcat1	2900035H07Rik|Aytl2|BB137372|BC005662|C87117|LPCAT|rd11	lysophosphatidylcholine acyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122103273-4	chr5	122103149	122103349	+	806.841675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010861, intron 3 of 6)	intron (NM_010861, intron 3 of 6)	2298.0	NM_010861	17906.0	Mm.1529	NM_010861	ENSMUSG00000013936	Myl2	MLC-2|MLC-2s/v|MLC-2v|Mlc2v|Mylpc	myosin, light polypeptide 2, regulatory, cardiac, slow	protein-coding	2.48881646145719	0.993822036047936	1.22393868214876	1.55638293530639	2.56497287601795	0.999372918773776	1.23325884343902	1.83966223072297	0.259455750976496	0.833798787389439	0.998431161219273
Merged-chr5-125485146-2	chr5	125485046	125485246	+	813.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030210, intron 3 of 17)	intron (NM_030210, intron 3 of 17)	9273.0	NM_030210	78894.0	Mm.431573	NM_030210	ENSMUSG00000029482	Aacs	2210408B16Rik|SUR5	acetoacetyl-CoA synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3387691-2	chr19	3387591	3387791	+	686.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1166.0	NM_001039658	17771.0	Mm.209941	NM_010841	ENSMUSG00000024905	Tesmin	Mtl5	testis expressed metallothionein like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-82361044-3	chr8	82360920	82361120	+	726.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008357, intron 2 of 7)	intron (NM_008357, intron 2 of 7)	41566.0	NM_001254747	16168.0	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-34684025-3	chr13	34683922	34684122	+	939.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(A)n|Simple_repeat|Simple_repeat	31099.0	NR_105041	101056149.0	Mm.421309	NR_105041	ENSMUSG00000086786	Gm15908	-	predicted gene 15908	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-10984844-4	chr16	10984748	10984948	+	864.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019980, intron 1 of 3)	intron (NM_019980, intron 1 of 3)	8273.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-99066477-2	chr9	99066377	99066577	+	656.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029094, intron 11 of 23)	RMER1B|Other|Other	-30787.0	NM_001080776	382097.0	Mm.293727	NM_001080776	ENSMUSG00000044860	Gm1123	AV052824|CLSP	predicted gene 1123	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-41563566-3	chr4	41563455	41563655	+	996.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027993, intron 1 of 5)	intron (NM_027993, intron 1 of 5)	5972.0	NM_001159583	71901.0	Mm.39215	NM_027993	ENSMUSG00000028439	Fam219a	2310028H24Rik	family with sequence similarity 219, member A	protein-coding	3.62415764849677	3.72317094396149	3.76795132707636	3.23600654278142	1.79432997630433	1.48294069418946	1.72840112278819	2.28420626094502	-3.38200045087658	1.49628469267665e-05	0.000639635050216193
Merged-chr13-99328582-2	chr13	99328482	99328682	+	794.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_026873, intron 7 of 9)	intron (NM_026873, intron 7 of 9)	16096.0	NM_026873	68927.0	Mm.276502	NM_026873	ENSMUSG00000021650	Ptcd2	1190005P08Rik	pentatricopeptide repeat domain 2	protein-coding	-0.834961445925102	-0.824899295443922	-0.828820896194705	-0.831132949643661	-0.834392715112411	-0.82213528919339	-0.367617276090873	-0.403244228759449	3.08550322448598	0.300156928301189	1
Merged-chr9-45237678-2	chr9	45237578	45237778	+	890.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001198971, intron 1 of 4)	Lx8|LINE|L1	29029.0	NR_106054	102466803.0		NR_106054	ENSMUSG00000098361	Mir7086	Gm27643|mmu-mir-7086	microRNA 7086	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127192375-2	chr7	127192228	127192428	+	874.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_027353, exon 7 of 7)	3' UTR (NM_027353, exon 7 of 7)	3749.0	NM_001285907	70233.0	Mm.28050	NM_027353	ENSMUSG00000042502	Cd2bp2	1500011B02Rik|2410024K20Rik|AW048183	CD2 antigen (cytoplasmic tail) binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-116442797-4	chr12	116442697	116442897	+	998.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133762, intron 23 of 28)	intron (NM_133762, intron 23 of 28)	37395.0	NM_133762	76044.0	Mm.491196	NM_133762	ENSMUSG00000042029	Ncapg2	5830426I05Rik|Luzp5|Mtb|mCAP-G2	non-SMC condensin II complex, subunit G2	protein-coding	3.37421462538294	2.76274203742845	3.03890598251187	2.87207890972832	2.24452454246307	2.66401742516655	1.71323642785035	1.39505591819938	-1.91742530767739	0.0193332828484858	0.175816620224456
Merged-chr12-56344927-2	chr12	56344827	56345027	+	869.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145442, intron 1 of 8)	intron (NM_145442, intron 1 of 8)	967.0	NM_145442	217588.0	Mm.25656	NM_145442	ENSMUSG00000021028	Mbip	4933408E06Rik	MAP3K12 binding inhibitory protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-109751846-4	chr5	109751746	109751946	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	82296.0	NR_027964	667213.0	Mm.454429	NR_027964	ENSMUSG00000105044	Gm10416	EG667213	zinc finger protein pseudogene	pseudo	4.56294508313634	5.67165079389338	5.73947548679257	3.39545282346648	5.69394999082304	6.42834648557957	6.2813851866455	4.86364364093848	0.922566253080689	0.174058474194383	0.641919003929331
Merged-chr17-47115948-2	chr17	47115848	47116048	+	736.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16E1|LTR|ERVL	-24994.0	NM_001097623	224829.0	Mm.260989	NM_172622		Trerf1	9430096I18Rik|AI429294|B830015H24|RAPA|Trep-132|Trep132	transcriptional regulating factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-17980189-2	chr13	17980089	17980289	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	13162.0	NM_025904	67008.0	Mm.252918	NM_025904	ENSMUSG00000075054	Yae1d1	1600012F09Rik	Yae1 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-3596632-4	chr5	3596538	3596738	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172991)	promoter-TSS (NM_172991)	-91.0	NM_172991	269623.0	Mm.38014	NM_172991	ENSMUSG00000040302	Rbm48	AW548102|C030048B08Rik	RNA binding motif protein 48	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-28451151-2	chr5	28451051	28451251	+	709.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15833.0	NR_015562	654796.0	Mm.57202	NR_015562	ENSMUSG00000097726	9530036O11Rik	-	RIKEN cDNA 9530036O11Rik	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126537487-4	chr8	126537386	126537586	+	970.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55950.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-51816024-4	chr11	51815909	51816109	+	809.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_199299, exon 12 of 12)	3' UTR (NM_199299, exon 12 of 12)	41472.0	NM_199299	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-23724968-1	chr13	23724868	23725068	+	550.0	f0_balb.idr	Intergenic	RMER17A2|LTR|ERVK	-13839.0	NM_015786	50708.0	Mm.193539	NM_015786	ENSMUSG00000036181	Hist1h1c	0610008C09Rik|H1.2|H1c|H1f2|H1var1|His1a	histone cluster 1, H1c	protein-coding	-0.871005820717275	-0.856965662620224	-0.863526904850342	-0.685444355401052	-0.870308789853087	-0.0707660149984618	-0.862727011488292	-0.86584035469931	2.33804081349928	0.426684863743744	1
Merged-chr12-73908512-4	chr12	73908392	73908592	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010431, intron 1 of 14)	CpG	625.0	NM_001313919	15251.0	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-168206443-4	chr2	168206293	168206493	+	913.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310086, intron 1 of 4)	CpG	719.0	NM_009628	11538.0	Mm.201322	NM_009628	ENSMUSG00000051149	Adnp	AA589558|mKIAA0784	activity-dependent neuroprotective protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129625211-4	chr2	129625107	129625307	+	963.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355158, intron 7 of 8)	intron (NM_001355158, intron 7 of 8)	29745.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	2.84157236982651	2.42441010662562	3.14859866274527	2.99031616219622	2.03873587982926	2.08799313020865	2.62456455264086	2.75207202529544	-0.93863083173331	0.209003082175872	0.698371420334047
Merged-chr8-83089746-4	chr8	83089617	83089817	+	870.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177378, exon 7 of 7)	3' UTR (NM_177378, exon 7 of 7)	-75635.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	1.04753378327383	1.52745229277986	1.48124434264665	1.58935109883889	2.01121354182167	1.70049956697498	1.897947888628	1.94011811226543	1.58944988729913	0.149726118342773	0.601628862608932
Merged-chr2-84382206-4	chr2	84382099	84382299	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018782, intron 2 of 15)	intron (NM_018782, intron 2 of 15)	43067.0	NM_018782	54598.0	Mm.75467	NM_018782	ENSMUSG00000059588	Calcrl	AV071593|CRLR	calcitonin receptor-like	protein-coding	4.08500760986355	4.32366479811222	3.78014271340039	5.27515423857094	5.2100875928031	5.4770989488042	5.29243228603778	5.37822710475592	1.01290339325464	0.00722054490382052	0.0864591793972441
Merged-chr11-101078816-2	chr11	101078716	101078916	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010475, intron 2 of 5)	intron (NM_010475, intron 2 of 5)	405.0	NM_010475	15485.0	Mm.188939	NM_010475	ENSMUSG00000019301	Hsd17b1	17HSDB1|17beta-HSD|E2DH|Hsd17ba	hydroxysteroid (17-beta) dehydrogenase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43445163-2	chr4	43445063	43445263	+	664.400024	f1_balb.idr|f1_c57bl6.idr	intron (NM_011571, intron 5 of 9)	intron (NM_011571, intron 5 of 9)	2886.0	NM_011571	21754.0	Mm.485441	NM_011571	ENSMUSG00000028458	Tesk1	AI326901	testis specific protein kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65294215-4	chr9	65294109	65294309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011802)	promoter-TSS (NM_011802)	-51.0	NM_011802	270166.0	Mm.30088	NM_011802	ENSMUSG00000015357	Clpx	AU014732|E330029I21	caseinolytic mitochondrial matrix peptidase chaperone subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84966154-4	chr8	84966051	84966251	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027187)	promoter-TSS (NM_027187)	-140.0	NM_027187	69724.0	Mm.182470	NM_027187	ENSMUSG00000052926	Rnaseh2a	2400006P09Rik|RNASEHI|RNHIA|RNHL	ribonuclease H2, large subunit	protein-coding	6.2968420823948	6.54323084946435	5.75692100093895	6.68286802707441	6.46966095575972	5.90921072972406	5.60718864517461	6.69625003609395	-0.128003843247366	0.639411405214636	0.982599433509505
Merged-chr9-107640358-4	chr9	107640286	107640486	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5044.0	NM_008138	14678.0	Mm.196464	NM_008138	ENSMUSG00000032562	Gnai2	C76432|Galphai2|Gia|Gnai-2	guanine nucleotide binding protein (G protein), alpha inhibiting 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-85454577-2	chr17	85454477	85454677	+	696.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028576, intron 10 of 10)	intron (NM_028576, intron 10 of 10)	163819.0	NR_038084	100043902.0	Mm.150838	NR_015385	ENSMUSG00000093460	Six3os1	D17Mgi26|E130112H22Rik|Rncr1|Six3os	SIX homeobox 3, opposite strand 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-93886062-1	chr11	93885962	93886162	+	1000.0	f0_c57.idr	promoter-TSS (NM_134012)	promoter-TSS (NM_134012)	-145.0	NM_001346525	103537.0	Mm.210334	NM_134012	ENSMUSG00000059474	Mbtd1	AA408199|AI194990|hemp	mbt domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69367333-1	chr11	69367233	69367433	+	545.0	f1_c57bl6.idr	intron (NM_146019, intron 1 of 39)	intron (NM_146019, intron 1 of 39)	2093.0	NM_146019	216848.0	Mm.178246	NM_146019	ENSMUSG00000018474	Chd3	2600010P09Rik|AF020312|Chd7|Prp7|Prp9-1	chromodomain helicase DNA binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95950875-2	chr3	95950787	95950987	+	1000.0	f0_balb.idr|f0_c57.idr	Intergenic	CpG	21630.0	NM_023210	66471.0	Mm.218657	NM_023210	ENSMUSG00000015749	Anp32e	2810018A15Rik|AI047746|AI326868|CPD1|LANP-L|LANPL|mLANP-L	acidic (leucine-rich) nuclear phosphoprotein 32 family, member E	protein-coding	1.43210324198238	0.277535958361551	0.470272726862443	0.607275337597471	0.421094507973035	0.279490277362279	0.645703860517441	0.263196242092576	-2.1669788520642	0.226760189999017	1
Merged-chr2-181287667-5	chr2	181287603	181287803	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198169, intron 1 of 9)	CpG	263.0	NM_198169	229004.0	Mm.220423	NM_198169	ENSMUSG00000038705	Gmeb2	AI839884	glucocorticoid modulatory element binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-106885245-2	chr9	106885139	106885339	+	750.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_175402, exon 1 of 1)	exon (NM_175402, exon 1 of 1)	1761.0	NM_175402	109095.0	Mm.431589	NM_175402	ENSMUSG00000074102	Rbm15b	1810017N16Rik	RNA binding motif protein 15B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-94720972-2	chr16	94720872	94721072	+	552.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	109553.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-76241471-4	chr16	76241386	76241586	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	118873.0	NR_040575	78215.0	Mm.243885	NR_040575		4930578N18Rik	-	RIKEN cDNA 4930578N18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-29460127-2	chr19	29460027	29460227	+	655.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021396, intron 5 of 5)	Lx8|LINE|L1	49208.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-13088819-2	chr15	13088724	13088924	+	735.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007666, intron 2 of 11)	MER119|DNA|hAT-Charlie	84851.0	NM_007666	12563.0	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36518012-2	chr18	36517912	36518112	+	640.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4|SINE|ID	-2207.0	NM_010415	15200.0	Mm.289681	NM_010415	ENSMUSG00000024486	Hbegf	AW047313|Dtr|Dts|Hegfl	heparin-binding EGF-like growth factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-77793400-4	chr11	77793296	77793496	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011586, intron 1 of 39)	intron (NM_011586, intron 1 of 39)	-7902.0	NM_001291214	360013.0	Mm.341248	NM_011586	ENSMUSG00000000631	Myo18a	MAJN|MyoPDZ|MysPDZ|SP-R210	myosin XVIIIA	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-90272161-2	chr9	90272061	90272261	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1392.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-114625797-2	chr5	114625697	114625897	+	707.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_022017, intron 13 of 15)	intron (NM_022017, intron 13 of 15)	32624.0	NM_022017	63873.0	Mm.266450	NM_022017	ENSMUSG00000014158	Trpv4	0610033B08Rik|OTRPC4|Trp12|VR-OAC|VRL-2|VROAC	transient receptor potential cation channel, subfamily V, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-131037328-4	chr2	131037224	131037424	+	955.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3074.0	NR_105969	102465606.0		NR_105969	ENSMUSG00000098686	Mir6973b	Gm27815|mmu-mir-6973b	microRNA 6973b	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-61375320-4	chr10	61375211	61375411	+	985.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013753, intron 1 of 19)	intron (NM_013753, intron 1 of 19)	8212.0	NM_013753	27355.0	Mm.269699	NM_013753	ENSMUSG00000020092	Pald1	MMPAL|Pald|mKIAA1274	phosphatase domain containing, paladin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-96192275-4	chr16	96192148	96192348	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001001492)	promoter-TSS (NM_001001492)	9.0	NM_001001492	385668.0	Mm.24626	NM_001001492	ENSMUSG00000045275	Lca5l	4921526F01Rik|Lcca5l	Leber congenital amaurosis 5-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-67085655-4	chr11	67085550	67085750	+	789.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001099635, intron 10 of 40)	intron (NM_001099635, intron 10 of 40)	7350.0	NM_001099635	17883.0	Mm.340090	NM_001099635	ENSMUSG00000020908	Myh3	MyHC-emb|Myhs-e|Myhse	myosin, heavy polypeptide 3, skeletal muscle, embryonic	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-57638080-4	chr9	57637974	57638174	+	945.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304761, intron 2 of 14)	intron (NM_001304761, intron 2 of 14)	7579.0	NM_007783	12988.0	Mm.21974	NM_007783	ENSMUSG00000032312	Csk	AW212630|p50CSK	c-src tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-45393843-2	chr4	45393743	45393943	+	874.4166869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14923.0	NM_001009949	230125.0	Mm.260210	NM_001009949	ENSMUSG00000045973	Slc25a51	9130208E07Rik|D130005A03Rik|Gm138|Mcart1	solute carrier family 25, member 51	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126795997-2	chr7	126795897	126796097	+	634.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001177308, exon 7 of 9)	exon (NM_001177308, exon 7 of 9)	3181.0	NM_001177307	11674.0	Mm.275831	NM_007438	ENSMUSG00000030695	Aldoa	Aldo-1|Aldo1	aldolase A, fructose-bisphosphate	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35910142-4	chr17	35910049	35910249	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001142745)	promoter-TSS (NM_001142745)	-74.0	NM_001357865	73242.0	Mm.273155	NM_028476	ENSMUSG00000024426	Atat1	0610011P08Rik|2610008K08Rik|2610110G12Rik|3110080J08Rik|Mec17|TAT	alpha tubulin acetyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-21642917-2	chr16	21642817	21643017	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081366, intron 46 of 46)	intron (NM_001081366, intron 46 of 46)	51748.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69964961-2	chr11	69964861	69965061	+	769.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016887)	promoter-TSS (NM_016887)	182.0	NM_001193619	53624.0	Mm.281896	NM_016887	ENSMUSG00000018569	Cldn7	-	claudin 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80582332-4	chr7	80582232	80582432	+	864.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-47213.0	NM_001042527	12144.0	Mm.12932	NM_007550	ENSMUSG00000030528	Blm	-	Bloom syndrome, RecQ like helicase	protein-coding	3.2087862395819	4.79155049822977	3.11049267639618	3.5376780070132	3.15575700146453	2.29712402701674	2.89403010206148	3.23321345456513	-1.3857484367057	0.0311468705631258	0.243457282903795
Merged-chr9-85844002-2	chr9	85843902	85844102	+	900.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_011627, exon 2 of 2)	exon (NM_011627, exon 2 of 2)	1150.0	NM_001164792	21983.0	Mm.20864	NM_011627	ENSMUSG00000035274	Tpbg	5T4|AW495680|WAIF1	trophoblast glycoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-28171973-2	chr3	28171873	28172073	+	596.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-91241.0	NM_001163007	665113.0	Mm.126193	NM_026910	ENSMUSG00000027692	Tnik	1500031A17Rik|4831440I19Rik|AI451411|C530008O15Rik|C630040K21Rik	TRAF2 and NCK interacting kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69915903-2	chr11	69915803	69916003	+	927.375	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001166596)	TTS (NM_001166596)	1869.0	NM_019726	56310.0	Mm.477738	NM_019726	ENSMUSG00000023170	Gps2	AI505953|GPS-2	G protein pathway suppressor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-67974949-2	chr17	67974849	67975049	+	915.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172964, intron 1 of 17)	intron (NM_172964, intron 1 of 17)	-24009.0	NM_001347410	268970.0	Mm.9935	NM_172964	ENSMUSG00000024043	Arhgap28	AU044757|AW550892|E130310N06	Rho GTPase activating protein 28	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-67842621-1	chr5	67842521	67842721	+	546.0	f1_c57bl6.idr	intron (NM_001038999, intron 1 of 36)	intron (NM_001038999, intron 1 of 36)	4810.0	NM_009727	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-42009875-1	chr18	42009775	42009975	+	868.0	f0_balb.idr	Intergenic	MER20B|DNA|hAT-Charlie	-10826.0	NM_001033426	332309.0	Mm.240520	NM_001033426	ENSMUSG00000073574	Grxcr2	Gm851	glutaredoxin, cysteine rich 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70236084-2	chr11	70235984	70236184	+	659.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_029581)	TTS (NR_029581)	1042.0	NR_029581	387190.0		NR_029581	ENSMUSG00000065411	Mir195a	Mir195|Mirn195|mir-195a|mmu-mir-195|mmu-mir-195a	microRNA 195a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115198991-4	chr11	115198824	115199024	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033393, intron 3 of 9)	intron (NM_001033393, intron 3 of 9)	11437.0	NM_001033393	320534.0	Mm.260587	NM_001033393	ENSMUSG00000045980	Tmem104	C630005D06Rik|mFLJ00021	transmembrane protein 104	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-24587956-4	chr2	24587833	24588033	+	843.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-112334.0	NM_011040	18510.0	Mm.2533	NM_011040	ENSMUSG00000026976	Pax8	Pax-8	paired box 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114894660-2	chr11	114894560	114894760	+	806.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_001359812, exon 4 of 8)	exon (NM_001359812, exon 4 of 8)	4619.0	NM_170758	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-84061100-3	chr12	84061006	84061206	+	786.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001346701)	TTS (NM_001346701)	-8218.0	NM_001347417	217698.0	Mm.484019	NM_145444	ENSMUSG00000042540	Acot5	BC016076|PTE-Ic	acyl-CoA thioesterase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-102779710-4	chr9	102779603	102779803	+	863.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40055.0	NR_033301	434510.0	Mm.387937	NM_001034892	ENSMUSG00000093812	Gm5627	EG434510	predicted gene 5627	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-60855741-2	chr18	60855641	60855841	+	706.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5b|LINE|L1	-6777.0	NM_001198984	21453.0	Mm.486251	NM_011552	ENSMUSG00000024613	Tcof1	AA408847|AW209012|treacle	treacle ribosome biogenesis factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-72533075-2	chr9	72532976	72533176	+	954.2000119999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033536, intron 1 of 8)	intron (NM_001033536, intron 1 of 8)	836.0	NM_001033536	319758.0	Mm.32081	NM_001033536	ENSMUSG00000037674	Rfx7	2510005N23Rik|9930116O05Rik|D130086K05Rik|Rfxdc2	regulatory factor X, 7	protein-coding	1.67934041761056	1.51807240804401	1.19337327753582	0.816086148717416	1.34896342670246	1.39722565382573	1.20249838880132	0.817864137936332	-0.547547016749478	0.685404909522408	0.996533206832645
Merged-chr18-39666365-3	chr18	39666269	39666469	+	799.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-107128.0	NM_011033	18459.0	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-124715311-2	chr4	124715211	124715411	+	851.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_029157, exon 2 of 17)	exon (NM_029157, exon 2 of 17)	450.0	NM_029157	75062.0	Mm.25779	NM_029157	ENSMUSG00000028902	Sf3a3	4930512K19Rik|60kDa	splicing factor 3a, subunit 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-41358842-4	chr4	41358751	41358951	+	968.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355508, intron 1 of 6)	intron (NM_001355508, intron 1 of 6)	6888.0	NM_001355508	67123.0	Mm.289795	NM_023305	ENSMUSG00000028437	Ubap1	2700092A01Rik|NAG20|UBAP-1|Ubap	ubiquitin-associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-30460035-4	chr14	30459951	30460151	+	789.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131095, intron 2 of 3)	intron (NR_131095, intron 2 of 3)	2015.0	NR_131095	77710.0	Mm.410773	NR_131095		4831407H17Rik	-	RIKEN cDNA 4831407H17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-96620942-4	chr10	96620781	96620981	+	968.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007569, exon 2 of 2)	3' UTR (NM_007569, exon 2 of 2)	3880.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-35477263-2	chr18	35477163	35477363	+	692.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030749, intron 1 of 9)	intron (NM_030749, intron 1 of 9)	-7311.0	NM_001360814	81500.0	Mm.291482	NM_030749	ENSMUSG00000024357	Sil1	1810057E01Rik|AI042831|wz	endoplasmic reticulum chaperone SIL1 homolog (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-103978535-2	chr14	103978435	103978635	+	569.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045953, exon 3 of 3)	non-coding (NR_045953, exon 3 of 3)	48607.0	NR_045953	73877.0	Mm.399172	NR_045953	ENSMUSG00000115727	4930432J09Rik	-	RIKEN cDNA 4930432J09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-15876910-1	chr3	15876810	15877010	+	588.5	f0_balb.idr	Intergenic	Lx4A|LINE|L1	-28423.0	NM_001173459	100038947.0	Mm.330924	NM_001173459	ENSMUSG00000074677	LOC100038947	-	signal-regulatory protein beta 1-like	protein-coding	0.935167868330455	1.00474393698978	0.982789440805058	1.53678991945963	2.21424809735192	2.06048143072821	1.98377110420952	1.915698630404	3.29990535877276	0.0104930888524756	0.112686274772465
Merged-chr14-118925130-4	chr14	118925015	118925215	+	842.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360412)	promoter-TSS (NM_001360412)	355.0	NM_025943	66573.0	Mm.87456	NM_025943	ENSMUSG00000042156	Dzip1	2510025K24Rik|2810422M04Rik	DAZ interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-86754029-2	chr11	86753929	86754129	+	722.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001003908, intron 1 of 31)	intron (NM_001003908, intron 1 of 31)	3538.0	NM_001003908	67300.0	Mm.254588	NM_001003908	ENSMUSG00000047126	Cltc	3110065L21Rik|CHC|R74732	clathrin, heavy polypeptide (Hc)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-121578882-4	chr8	121578811	121579011	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133765)	promoter-TSS (NM_133765)	-105.0	NM_133765	76454.0	Mm.24829	NM_133765	ENSMUSG00000052934	Fbxo31	1110003O08Rik|2310046N15Rik|Fbx14|Fbxo14	F-box protein 31	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100428525-4	chr7	100428428	100428628	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001017985, intron 20 of 32)	intron (NM_001017985, intron 20 of 32)	-44463.0	NM_009464	22229.0	Mm.6254	NM_009464	ENSMUSG00000032942	Ucp3	AI645527|Slc25a9|UCP-3	uncoupling protein 3 (mitochondrial, proton carrier)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-6030562-4	chr15	6030461	6030661	+	921.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155428, intron 2 of 2)	Lx8b|LINE|L1	14143.0	NR_155428	105245876.0	Mm.128197	NR_155428		Gm41259	-	predicted gene, 41259	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118236153-2	chr11	118236092	118236292	+	807.283325	f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	B1_Mus2|SINE|Alu	12400.0	NM_001112699	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-87758625-11	chr11	87758382	87758582	+	943.242432	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1527.0	NR_106176	102466883.0		NR_106176	ENSMUSG00000065420	Mir142b	Gm27750|mmu-mir-142b	microRNA 142b	ncRNA	2.18374842969811	1.49729506094068	3.28273439163998	2.31194350756135	1.71245277295703	2.10280603166177	1.18620453269312	1.80553299993197	-1.76312782845577	0.0766222639177472	0.420161756163222
Merged-chr10-118814089-2	chr10	118813989	118814189	+	650.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54814.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-91284144-4	chr17	91284040	91284240	+	999.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-191338.0	NM_020252	18189.0	Mm.478418	NM_020252	ENSMUSG00000024109	Nrxn1	1700062G21Rik|9330127H16Rik|A230068P09Rik|mKIAA0578	neurexin I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91710465-4	chr2	91710360	91710560	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178724)	promoter-TSS (NM_178724)	132.0	NM_145528	51897.0	Mm.28492	NM_145528	ENSMUSG00000027244	Atg13	1110053A20Rik|D2Ertd391e|Harbi1	autophagy related 13	protein-coding	1.09641632438923	1.09973023887217	1.30831322163498	1.15759416097287	1.20619457078717	0.942734705008224	1.07118224540248	0.726649662545245	-0.808023785207388	0.552271027974641	0.959523840754686
Merged-chr6-84054045-2	chr6	84053945	84054145	+	834.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077694, intron 3 of 54)	intron (NM_001077694, intron 3 of 54)	34659.0	NM_021469	26903.0	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96066223-3	chr3	96066077	96066277	+	667.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr	Intergenic	Intergenic	-7722.0	NM_013841	22365.0	Mm.263185	NM_013841	ENSMUSG00000015747	Vps45	AI462172|AW554165|mVps45	vacuolar protein sorting 45	protein-coding	2.55163843338213	0.960683347488898	1.1985750373819	1.1639267939355	1.94193707400379	2.58388043503102	1.42567573587098	0.916245075277673	0.491507051089514	0.69376198945403	0.997555376536883
Merged-chr1-152554014-2	chr1	152553914	152554114	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 6 of 17)	intron (NM_016846, intron 6 of 17)	71203.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-55152595-1	chr16	55152495	55152695	+	740.0	f0_balb.idr	Intergenic	Intergenic	130642.0	NM_178720	239852.0	Mm.245045	NM_178720	ENSMUSG00000064310	Zpld1	9430016A21Rik	zona pellucida like domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81067272-3	chr15	81067181	81067381	+	918.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001082536, intron 2 of 13)	intron (NM_001082536, intron 2 of 13)	37766.0	NM_153049	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150462610-2	chr4	150462510	150462710	+	885.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 4 of 22)	intron (NM_001085492, intron 4 of 22)	180694.0	NM_001085492	68703.0	Mm.291274	NM_001085492	ENSMUSG00000039852	Rere	1110033A15Rik|AI414665|ARG|ARP|ATN1L|AW742570|Atr2|DNB1|eye<m03Jus>|eyes3|mKIAA0458	arginine glutamic acid dipeptide (RE) repeats	protein-coding	-0.953721354153451	-1.41025554057125	-1.42001056191158	-1.42802362688808	-1.44024889148474	-1.40814158675276	-1.41780223890411	-1.42658929208844	-2.11310844444413	0.543369238581748	1
Merged-chr12-83592556-2	chr12	83592456	83592656	+	837.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359167, intron 3 of 12)	RSINE1|SINE|B4	4666.0	NM_001359167	217695.0	Mm.59257	NM_183154	ENSMUSG00000042628	Zfyve1	DFCP1|G630053K23|TAFF1|ZNFN2A1|mKIAA1589	zinc finger, FYVE domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-146779108-3	chr3	146779009	146779209	+	870.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011100, intron 1 of 9)	intron (NM_011100, intron 1 of 9)	2307.0	NM_001164200	18749.0	Mm.16766	NM_011100	ENSMUSG00000005034	Prkacb	CbPKA|Pkacb	protein kinase, cAMP dependent, catalytic, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5247769-2	chr17	5247669	5247869	+	575.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 5 of 19)	intron (NM_001085355, intron 5 of 19)	170998.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127767153-2	chr7	127767053	127767253	+	681.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_172748, intron 9 of 10)	L2a|LINE|L2	-2662.0	NM_198424	269999.0	Mm.36852	NM_198424	ENSMUSG00000043964	Orai3	9930124N15|BC061259|Tmem142c	ORAI calcium release-activated calcium modulator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-32799889-2	chr13	32799789	32799989	+	573.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR12G|LTR|ERVK	-2141.0	NM_030215	78903.0	Mm.286680	NM_030215	ENSMUSG00000021400	Wrnip1	4833444L21Rik|WHIP|Wrnip	Werner helicase interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-144004943-4	chr1	144004841	144005041	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009061)	promoter-TSS (NM_009061)	-792.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-25277300-2	chr8	25277200	25277400	+	644.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28970.0	NR_040352	74489.0	Mm.256468	NR_040352	ENSMUSG00000110140	5430421F17Rik	-	RIKEN cDNA 5430421F17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-30008089-2	chr17	30007989	30008189	+	546.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_151443, intron 1 of 4)	intron (NR_151443, intron 1 of 4)	3050.0	NM_001356265	21769.0	Mm.220972	NM_148926	ENSMUSG00000044477	Zfand3	AW539211|TEG-27|Tex27	zinc finger, AN1-type domain 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-69723055-7	chr2	69722981	69723181	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081086)	promoter-TSS (NM_001081086)	-7.0	NM_001081086	228005.0	Mm.11815	NM_001081086	ENSMUSG00000042133	Ppig	AU019516|AU022200|B230312B02Rik|CYP|SRCyp	peptidyl-prolyl isomerase G (cyclophilin G)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-152293955-4	chr2	152293856	152294056	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024196)	promoter-TSS (NM_024196)	84.0	NM_024196	67231.0	Mm.288733	NM_024196	ENSMUSG00000027465	Tbc1d20	1110028I04Rik|2810442O16Rik|AI414693|bs	TBC1 domain family, member 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-92824611-6	chr16	92824478	92824678	+	794.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111022, intron 2 of 6)	intron (NM_001111022, intron 2 of 6)	1496.0	NM_001111021	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34151179-2	chr17	34151073	34151273	+	988.75	f0_balb.idr|f1_balb.idr	TTS (NM_010388)	TTS (NM_010388)	-2018.0	NM_010387	14999.0	Mm.460938	NM_010387	ENSMUSG00000079547	H2-DMb1	AI385589|H-2Mb1|H2-Mb1	histocompatibility 2, class II, locus Mb1	protein-coding	1.24927331969677	2.74422503121907	1.43832790985039	1.371599911943	4.16753813442311	4.67953001984315	4.53676692577232	4.89248589270116	4.74704953871842	1.25657480695131e-09	2.01915864291988e-07
Merged-chr4-35222594-2	chr4	35222494	35222694	+	914.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081343, intron 1 of 10)	Tigger7|DNA|TcMar-Tigger	3286.0	NM_001081343	73205.0	Mm.331544	NM_001081343	ENSMUSG00000028300	3110043O21Rik	AI840585|C9orf72	RIKEN cDNA 3110043O21 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-66124787-4	chr7	66124699	66124899	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081163, intron 1 of 2)	intron (NM_001081163, intron 1 of 2)	15284.0	NM_001081163	269941.0	Mm.333916	NM_001081163	ENSMUSG00000032640	Chsy1	mKIAA0990	chondroitin sulfate synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-128417214-7	chr1	128417084	128417284	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177445, exon 1 of 16)	exon (NM_177445, exon 1 of 16)	232.0	NM_177445	226414.0	Mm.28693	NM_145507	ENSMUSG00000026356	Dars	5730439G15Rik	aspartyl-tRNA synthetase	protein-coding	2.96540426788524	2.69996886170125	3.00925668632676	3.30601181588842	4.17741383280107	3.25350992816564	3.72361031131821	3.14540299411949	1.01839140963551	0.0842229304848814	0.445418771653368
Merged-chr19-56399243-2	chr19	56399143	56399343	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007611, intron 1 of 6)	intron (NM_007611, intron 1 of 6)	2114.0	NM_007611	12369.0	Mm.35687	NM_007611	ENSMUSG00000025076	Casp7	AI314680|CMH-1|ICE-IAP3|Mch3|caspase-7|mCASP-7	caspase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5726335-4	chr19	5726223	5726423	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053252)	promoter-TSS (NM_053252)	-6.0	NM_053252	114601.0	Mm.210447	NM_053252	ENSMUSG00000024937	Ehbp1l1	G430002G23Rik	EH domain binding protein 1-like 1	protein-coding	3.43860517455044	3.49407749870251	2.66045760769718	3.4286725470378	2.89912959898585	1.70887379635288	3.04591054622494	3.63249999074336	-0.495813933717344	0.480317206524712	0.928692389968333
Merged-chr12-118772938-4	chr12	118772810	118773010	+	724.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6BA|LTR|ERVK	-73419.0	NM_177082	320145.0	Mm.51682	NM_177082	ENSMUSG00000048562	Sp8	D930049B17Rik|mBtd	trans-acting transcription factor 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-93659201-3	chr2	93659098	93659298	+	569.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007442, intron 1 of 3)	intron (NM_007442, intron 1 of 3)	16764.0	NM_007442	11695.0	Mm.389389	NM_007442	ENSMUSG00000040310	Alx4	lst	aristaless-like homeobox 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-160370673-2	chr2	160370573	160370773	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3608.0	NM_010658	16658.0	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-53250254-4	chr18	53250157	53250357	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029394, intron 1 of 6)	intron (NM_029394, intron 1 of 6)	4595.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	4.19251909553901	4.45626063083211	3.77346725034422	5.05119230776137	4.39833734545429	4.54178004117362	3.41530995417838	4.27480084641886	-0.298852139184501	0.511685815545274	0.94512318675548
Merged-chr16-10482529-4	chr16	10482416	10482616	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001243760, intron 1 of 18)	intron (NM_001243760, intron 1 of 18)	2444.0	NM_001302618	12265.0	Mm.249560	NM_007575	ENSMUSG00000022504	Ciita	C2ta|EG669998|Gm9475|Mhc2ta	class II transactivator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-53927685-1	chr10	53927585	53927785	+	1000.0	f0_balb.idr	intron (NM_008548, intron 8 of 12)	MTD|LTR|ERVL-MaLR	148111.0	NM_008548	17155.0	Mm.117294	NM_008548	ENSMUSG00000003746	Man1a	Man1a1|PCR1	mannosidase 1, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-41057440-5	chr8	41057307	41057507	+	875.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005863, intron 3 of 13)	intron (NM_001005863, intron 3 of 13)	-2611.0	NM_001005864	102103.0	Mm.149438	NM_001005863	ENSMUSG00000045636	Mtus1	AI481402|ATBP135|Atip1|B430010I23Rik|B430305I03Rik|C85752|Cctsg1-440|MD44|MTSG1|mKIAA1288	mitochondrial tumor suppressor 1	protein-coding	4.16074128735677	4.67164445852335	5.04762024392972	4.18122997817826	3.78906219252757	1.86363628639592	3.75400704910461	2.61227251156977	-1.81507300498344	0.00139274183261415	0.0254986518428859
Merged-chr3-60526407-4	chr3	60526316	60526516	+	932.716675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253711, intron 1 of 7)	intron (NM_001253711, intron 1 of 7)	25237.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	0.641308110845662	0.386067298153253	1.07095733621578	0.372261257164897	0.517197244359938	1.03083436695275	0.380007927060346	0.820865152116552	0.315970923582932	0.855687945241608	1
Merged-chr5-140332274-4	chr5	140332169	140332369	+	859.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026510)	promoter-TSS (NM_026510)	313.0	NM_001356584	17766.0	Mm.118846	NM_008637	ENSMUSG00000036639	Nudt1	Mth1	nudix (nucleoside diphosphate linked moiety X)-type motif 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-113422660-7	chr11	113422531	113422731	+	981.642883	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027216, intron 5 of 9)	intron (NM_027216, intron 5 of 9)	143184.0	NM_001166503	69806.0	Mm.341021	NM_027216	ENSMUSG00000041654	Slc39a11	1810074D23Rik	solute carrier family 39 (metal ion transporter), member 11	protein-coding	1.41681922381424	1.33534245348051	2.28034729891111	1.21748404472347	3.078494195435	3.30988034172477	4.74289285508616	3.46526180324192	4.16137194821956	3.83855123208988e-06	0.000203782910100064
Merged-chr11-69099356-4	chr11	69099259	69099459	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159367)	promoter-TSS (NM_001159367)	410.0	NM_011065	18626.0	Mm.7373	NM_011065	ENSMUSG00000020893	Per1	Hftm|Per|m-rigui|mPer1	period circadian clock 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-144752618-2	chr5	144752518	144752718	+	963.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177735, intron 2 of 7)	intron (NM_177735, intron 2 of 7)	8960.0	NM_177735	243339.0	Mm.126793	NM_177735	ENSMUSG00000043388	Tmem130	BC067004|C130036G08	transmembrane protein 130	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-64510257-4	chr18	64510179	64510379	+	958.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142950, intron 6 of 14)	intron (NM_001142950, intron 6 of 14)	6278.0	NM_027350	70223.0	Mm.29192	NM_027350	ENSMUSG00000024587	Nars	3010001M15Rik|AA960128|ASNRS|C78150	asparaginyl-tRNA synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-121679708-3	chr9	121679622	121679822	+	773.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_178677)	TTS (NM_178677)	25307.0	NM_178677	215474.0	Mm.31421	NM_178677	ENSMUSG00000061536	Sec22c	4932412K21|5930407I15Rik|C530046H07|Sec22l3	SEC22 homolog C, vesicle trafficking protein	protein-coding	0.22184302158291	-0.125587497292477	0.0405216867683512	-0.133693866074845	0.563806072645393	-0.124553385066374	0.0450548380076432	-0.133078380591263	0.974299637758906	0.660608633621012	1
Merged-chr2-168904383-4	chr2	168904253	168904453	+	925.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51234.0	NM_009564	22722.0	Mm.2095	NM_009564	ENSMUSG00000027551	Zfp64	-	zinc finger protein 64	protein-coding	1.71682233783842	1.74886395900949	1.13245925562698	1.26801711912792	1.34608882141578	0.947358208428268	1.69897866394939	1.27390897733489	-0.551016528054595	0.652594580319071	0.986434615290108
Merged-chr10-7469191-2	chr10	7469091	7469291	+	709.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029975, intron 1 of 5)	intron (NM_029975, intron 1 of 5)	4286.0	NM_029975	77777.0	Mm.442442	NM_029975	ENSMUSG00000079685	Ulbp1	A430108B07Rik|MULT1	UL16 binding protein 1	protein-coding	0.0416580832831417	-0.421944439306688	-0.426079071082992	-0.429268437961628	0.298006142688708	-0.421012304237342	-0.425167227303848	-0.428711300614874	0.830380190000066	0.760537087361261	1
Merged-chr5-123832474-4	chr5	123832398	123832598	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33018.0	NM_030701	80885.0	Mm.440567	NM_030701	ENSMUSG00000045502	Hcar2	Gpr109a|Gpr109b|HM74|Niacr1|PUMA-G|Pumag|mHM74b	hydroxycarboxylic acid receptor 2	protein-coding	5.77662419492692	4.85095382455464	5.47090860616091	5.62723266628323	4.28635497149703	3.7607614290773	4.99185682594942	4.59592809290903	-1.18562030137233	0.00104528565103744	0.0201629216095613
Merged-chr7-30559722-4	chr7	30559618	30559818	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290569)	promoter-TSS (NM_001290569)	-72.0	NM_001290569	75660.0	Mm.379242	NM_029377	ENSMUSG00000036845	Lin37	1810054G18Rik	lin-37 homolog (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-57797582-4	chr14	57797464	57797664	+	864.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001142441)	promoter-TSS (NM_001142441)	-625.0	NM_009119	20220.0	Mm.30173	NM_009119	ENSMUSG00000021963	Sap18	C530046K05Rik|D11Ertd539e|EMegR4|Sap18a|Sinbp1	Sin3-associated polypeptide 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-68874646-4	chr2	68874536	68874736	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347161, intron 1 of 10)	intron (NM_001347161, intron 1 of 10)	13195.0	NM_001347161	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-156253040-2	chr2	156252926	156253126	+	633.833374	f0_c57.idr|f1_c57bl6.idr	intron (NM_172674, intron 3 of 17)	intron (NM_172674, intron 3 of 17)	56379.0	NM_172674	228829.0	Mm.427078	NM_172674	ENSMUSG00000038116	Phf20	6820402O20Rik	PHD finger protein 20	protein-coding	2.16905981735205	2.33012012393388	3.56356898069025	2.41356082205857	1.77878123819344	1.26870611308279	2.61841396904987	1.19136168919015	-1.90157732378441	0.0531126179075902	0.337166767013369
Merged-chr2-170129433-4	chr2	170129261	170129461	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159683, intron 2 of 6)	intron (NM_001159683, intron 2 of 6)	1859.0	NM_001033299	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-39655333-1	chr7	39655233	39655433	+	1000.0	f0_c57.idr	Intergenic	IAPLTR2_Mm|LTR|ERVK	137567.0	NM_001004139	70227.0	Mm.333800	NM_001004139	ENSMUSG00000068959	Zfp619	3000002G13Rik	zinc finger protein 619	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-21997542-4	chr3	21997415	21997615	+	999.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-79137.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4698402-1	chr19	4698302	4698502	+	756.0	f1_c57bl6.idr	exon (NM_001033447, exon 1 of 15)	exon (NM_001033447, exon 1 of 15)	266.0	NM_001033447	381196.0	Mm.297789	NM_001033447	ENSMUSG00000071691	Gm960	TOPOVIBL|Top6bl	predicted gene 960	protein-coding	1.22026464669044	0.68207915660848	1.75467717261754	0.861594245736511	1.74159419191499	0.685166541447514	0.671293265540329	1.03703114187729	-0.278311690153374	0.853782008224931	0.998431161219273
Merged-chr1-135509311-2	chr1	135509211	135509411	+	801.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_173437, intron 3 of 28)	intron (NM_173437, intron 3 of 28)	-54628.0	NR_049188	100885827.0		NR_049188	ENSMUSG00000093515	Mir1231	Gm23720|mir-1231|mmu-mir-1231	microRNA 1231	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-66490834-4	chr8	66490718	66490918	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4288.0	NM_001357208	66282.0	Mm.294985	NM_025465	ENSMUSG00000025591	Tma16	1810029B16Rik	translation machinery associated 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-39003342-2	chr2	39003242	39003442	+	869.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025592, intron 3 of 3)	intron (NM_025592, intron 3 of 3)	1789.0	NM_025592	66489.0	Mm.345333	NM_025592	ENSMUSG00000062997	Rpl35	2410039E09Rik	ribosomal protein L35	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-72641192-1	chr1	72641092	72641292	+	621.0	f0_c57.idr	Intergenic	CpG	57941.0	NM_018817	54380.0	Mm.274232	NM_018817	ENSMUSG00000039354	Smarcal1	6030401P21Rik|AI851716|Mharp	SWI/SNF related matrix associated, actin dependent regulator of chromatin, subfamily a-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-113614784-4	chr13	113614679	113614879	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130796, intron 1 of 1)	intron (NM_130796, intron 1 of 1)	3785.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118629805-2	chr9	118629705	118629905	+	948.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 3 of 27)	intron (NM_133721, intron 3 of 27)	23096.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-44601262-1	chr13	44601162	44601362	+	547.0	f0_balb.idr	Intergenic	Intergenic	-129512.0	NM_021878	16468.0	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-67243376-2	chr7	67243276	67243476	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291195, intron 8 of 10)	intron (NM_001291195, intron 8 of 10)	20760.0	NM_001191051	75099.0	Mm.121691	NM_175215	ENSMUSG00000043831	Lysmd4	4930506D23Rik	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120663865-2	chr8	120663765	120663965	+	865.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_010926, intron 1 of 4)	B3A|SINE|B2	4247.0	NM_010926	18117.0	Mm.2136	NM_010926	ENSMUSG00000031819	Emc8	Cox4nb|Fam158b|Noc4	ER membrane protein complex subunit 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-57166796-4	chr16	57166717	57166917	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023175, intron 1 of 9)	intron (NM_023175, intron 1 of 9)	515.0	NM_023175	52633.0	Mm.383203	NM_023175	ENSMUSG00000022751	Nit2	1190017B19Rik|D16Ertd502e	nitrilase family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-36458082-1	chr8	36457982	36458182	+	802.0	f1_c57bl6.idr	Intergenic	CpG	-31109.0	NM_176952	319582.0	Mm.180924	NM_176952	ENSMUSG00000039620	6430573F11Rik	Kiaa1456|TRM9L|Trmt9b	RIKEN cDNA 6430573F11 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47503972-2	chr17	47503872	47504072	+	960.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	-1079.0	NM_001081636	12445.0	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-87249641-2	chr9	87249541	87249741	+	569.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_199316, intron 2 of 26)	intron (NM_199316, intron 2 of 26)	5891.0	NM_199316	382090.0	Mm.335338	NM_199316	ENSMUSG00000056919	Cep162	4922501C03Rik|mKIAA1009	centrosomal protein 162	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59864897-4	chr15	59864797	59864997	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J1|LTR|ERVL-MaLR	-69938.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-42329463-2	chr13	42329363	42329563	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27987.0	NM_010104	13614.0	Mm.14543	NM_010104	ENSMUSG00000021367	Edn1	ET-1|PPET1|preproET	endothelin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111567758-3	chr12	111567655	111567855	+	883.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6647.0	NR_045295	100504687.0	Mm.26072	NR_045295	ENSMUSG00000096995	2810029C07Rik	AU017849	RIKEN cDNA 2810029C07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-57167319-4	chr16	57167165	57167365	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023175)	promoter-TSS (NM_023175)	67.0	NM_023175	52633.0	Mm.383203	NM_023175	ENSMUSG00000022751	Nit2	1190017B19Rik|D16Ertd502e	nitrilase family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-101020273-4	chr4	101020146	101020346	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48792.0	NM_183024	242570.0	Mm.185636	NM_183024	ENSMUSG00000035275	Raver2	A430091O22Rik	ribonucleoprotein, PTB-binding 2	protein-coding	4.06942397555602	1.81064196553173	4.03923041859689	4.26937697031647	3.52738817933955	2.77328796454893	3.41847498045797	4.15534646297585	-0.38012394870636	0.563611018609153	0.960367595640396
Merged-chr3-145929169-2	chr3	145929069	145929269	+	849.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009740, intron 1 of 2)	B1_Mus2|SINE|Alu	4907.0	NM_009740	12042.0	Mm.239141	NM_009740	ENSMUSG00000028191	Bcl10	AI132454|BCL-10|C81403|CARMEN|CIPER|CLAP|ME10|cE10	B cell leukemia/lymphoma 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-87358888-4	chr3	87358877	87359077	+	915.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009690, intron 1 of 5)	intron (NM_009690, intron 1 of 5)	1096.0	NM_009690	11801.0	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	4.12001320493913	4.42987306367967	4.23246898596753	4.84513482839047	3.38449485606364	5.14411506928924	3.49301503605987	3.56858644048488	-0.415686127356037	0.415810013083825	0.896676881011847
Merged-chr9-45249526-2	chr9	45249426	45249626	+	888.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001198971, exon 5 of 5)	3' UTR (NM_001198971, exon 5 of 5)	17181.0	NR_106054	102466803.0		NR_106054	ENSMUSG00000098361	Mir7086	Gm27643|mmu-mir-7086	microRNA 7086	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-46858025-2	chr17	46857925	46858125	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26612.0	NM_001100452	210982.0	Mm.37642	NM_001100452	ENSMUSG00000036568	Bicral	Gltscr1l|mKIAA0240	BRD4 interacting chromatin remodeling complex associated protein like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-96849884-4	chr11	96849759	96849959	+	790.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019877)	promoter-TSS (NM_019877)	-17.0	NM_019877	56358.0	Mm.22144	NM_019877	ENSMUSG00000018672	Copz2	1110012D12Rik|zeta2-COP	coatomer protein complex, subunit zeta 2	protein-coding	0.859476275768936	1.12479478325202	0.919073453470307	1.59291037249883	0.865126384722286	0.95350705578047	0.925327727551705	1.60298766822065	-0.127679530594266	0.924009396633035	0.998431161219273
Merged-chr14-25313025-1	chr14	25312925	25313125	+	826.0	f0_balb.idr	Intergenic	ID|SINE|ID	-146160.0	NM_001310666	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-137670453-2	chr5	137670353	137670553	+	729.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001303271, intron 1 of 12)	B3|SINE|B2	14300.0	NM_001303271	231801.0	Mm.260869	NM_145566	ENSMUSG00000029722	Agfg2	A630095P14Rik|Hrbl|RAB-R|RABR	ArfGAP with FG repeats 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-12558346-4	chr19	12558231	12558431	+	976.991699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-15179.0	NM_001346545	107373.0	Mm.1643	NM_026640	ENSMUSG00000024691	Fam111a	4632417K18Rik|AW413625	family with sequence similarity 111, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-49902966-4	chr16	49902867	49903067	+	833.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010581, intron 8 of 9)	Lx9|LINE|L1	47313.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-43131034-2	chr17	43130934	43131134	+	820.083374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27257.0	NR_045155	545207.0	Mm.329050	NR_045153		E130008D07Rik	-	RIKEN cDNA E130008D07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-45048245-4	chr19	45048139	45048339	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362381, intron 1 of 10)	intron (NM_001362381, intron 1 of 10)	663.0	NM_001362381	94280.0	Mm.36169	NM_053197	ENSMUSG00000025212	Sfxn3	-	sideroflexin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98075667-4	chr11	98075683	98075883	+	738.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22321.0	NM_146028	217154.0	Mm.181008	NM_146028	ENSMUSG00000017400	Stac2	24b2|24b2/STAC2|AW240854	SH3 and cysteine rich domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36319966-2	chr1	36319866	36320066	+	621.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033310, exon 6 of 6)	non-coding (NR_033310, exon 6 of 6)	12233.0	NM_001172205	214855.0	Mm.34316	NM_145996	ENSMUSG00000037447	Arid5a	D430024K22Rik|Mrf1	AT rich interactive domain 5A (MRF1-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-22962546-4	chr9	22962447	22962647	+	795.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-260529.0	NM_028472	73230.0	Mm.335020	NM_028472	ENSMUSG00000031963	Bmper	3110056H04Rik|CV-2|Crim3|Cv2	BMP-binding endothelial regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-158405682-2	chr2	158405599	158405799	+	582.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA6|LINE|L1	-4154.0	NM_001291137	228850.0	Mm.398185	NM_177227	ENSMUSG00000027652	Ralgapb	AI507211|B230339M05Rik|p170	Ral GTPase activating protein, beta subunit (non-catalytic)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44269302-1	chr9	44269202	44269402	+	652.0	f0_c57.idr	promoter-TSS (NM_001163742)	promoter-TSS (NM_001163742)	-703.0	NM_001163742	270151.0	Mm.3957	NM_178420	ENSMUSG00000032109	Nlrx1	BC034204|NOD9	NLR family member X1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53217747-4	chr4	53217661	53217861	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28435.0	NR_040665	78180.0	Mm.243847	NR_040665	ENSMUSG00000086947	4930522O17Rik	-	RIKEN cDNA 4930522O17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-40965061-3	chr8	40964952	40965152	+	887.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026840, intron 2 of 5)	ORR1F|LTR|ERVL-MaLR	38819.0	NM_026840	68797.0	Mm.284246	NM_026840	ENSMUSG00000031595	Pdgfrl	1110039P19Rik|AV013190	platelet-derived growth factor receptor-like	protein-coding	2.25743435018143	2.03438342066685	2.63180404982051	2.74290875828207	0.893086538709987	0.992780543912134	0.962079081728526	0.934625541072621	-5.77669336105644	1.17888807177893e-05	0.000530411215695133
Merged-chr3-37324525-2	chr3	37324425	37324625	+	620.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11971.0	NM_001008502	241950.0	Mm.32171	NM_001008502	ENSMUSG00000051444	Bbs12	Gm1805|Gm407|Gm721	Bardet-Biedl syndrome 12 (human)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26569322-1	chr17	26569222	26569422	+	849.0	f1_c57bl6.idr	intron (NM_026170, intron 1 of 9)	L1MB1|LINE|L1	7810.0	NM_026170	67458.0	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	1.04821627294821	2.26307611811095	0.698093213267399	1.66318306609233	1.91235902188918	0.722571356311575	0.70258019263772	0.684925599721842	-1.25849764337588	0.401518950492771	0.886751325563677
Merged-chr6-120473653-4	chr6	120473559	120473759	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008359, intron 3 of 12)	intron (NM_008359, intron 3 of 12)	10462.0	NM_008359	16172.0	Mm.4481	NM_008359	ENSMUSG00000002897	Il17ra	AW538159|Cdw217|Il17r|VDw217	interleukin 17 receptor A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80710642-2	chr10	80710542	80710742	+	687.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007460, intron 24 of 30)	intron (NM_007460, intron 24 of 30)	7949.0	NM_027829	71564.0	Mm.35802	NM_027829	ENSMUSG00000055862	Izumo4	9030607L17Rik|AI550407	IZUMO family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-20636334-2	chr11	20636234	20636434	+	771.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038625, intron 1 of 1)	intron (NM_001038625, intron 1 of 1)	4357.0	NM_001038625	58172.0	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111557740-4	chr12	111557651	111557851	+	969.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16651.0	NR_045295	100504687.0	Mm.26072	NR_045295	ENSMUSG00000096995	2810029C07Rik	AU017849	RIKEN cDNA 2810029C07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-118598208-4	chr2	118598078	118598278	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009773)	promoter-TSS (NM_009773)	-33.0	NM_009773	12236.0	Mm.29133	NM_009773	ENSMUSG00000040084	Bub1b	AU045529|BUBR1	BUB1B, mitotic checkpoint serine/threonine kinase	protein-coding	5.6411889695992	4.64591656551368	5.27216982520102	3.713170644243	6.08592734521068	5.36364213502797	6.25123027374327	6.017983154841	1.09929514173778	0.00268843640356568	0.0419633911144592
Merged-chr5-92270656-4	chr5	92270569	92270769	+	704.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025972, intron 3 of 10)	intron (NM_025972, intron 3 of 10)	7512.0	NM_001163687	67111.0	Mm.28890	NM_025972	ENSMUSG00000029413	Naaa	2210023K21Rik|3830414F09Rik|Asahl	N-acylethanolamine acid amidase	protein-coding	3.59070065820166	3.94307218228134	4.07317813140764	4.12737039663872	3.32517481607578	4.04179594606249	3.98022030689472	3.40817894489308	-0.32529611169755	0.500784386778799	0.938130176835437
Merged-chr3-79982564-4	chr3	79982456	79982656	+	940.525024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	96626.0	NM_133187	68659.0	Mm.427274	NM_133187	ENSMUSG00000027955	Fam198b	1110032E23Rik|2210419I08Rik|AV011458|Ened	family with sequence similarity 198, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-23669426-4	chr9	23669334	23669534	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-428584.0	NM_175678	319239.0	Mm.130824	NM_175678	ENSMUSG00000043659	Npsr1	9330128H10Rik|GPRA|Gpr154|MVTR|PGR14|VRR1	neuropeptide S receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-64657819-3	chr14	64657714	64657914	+	937.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081177, intron 1 of 39)	intron (NM_001081177, intron 1 of 39)	5283.0	NM_001081177	16554.0	Mm.23611	NM_001081177	ENSMUSG00000060012	Kif13b	5330429L19Rik|6030414C01|AI429803|C130021D12Rik|GAKIN	kinesin family member 13B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-130861845-4	chr4	130861759	130861959	+	894.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-51475.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3928139-4	chr19	3928040	3928240	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026316, intron 1 of 9)	intron (NM_026316, intron 1 of 9)	1576.0	NM_026316	67689.0	Mm.109341	NM_026316	ENSMUSG00000024885	Aldh3b1	1700001N19Rik|ALDH4|ALDH7	aldehyde dehydrogenase 3 family, member B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-11160891-2	chr14	11160791	11160991	+	974.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360141, intron 1 of 9)	intron (NM_001360141, intron 1 of 9)	1144.0	NM_010210	14198.0	Mm.397619	NM_010210	ENSMUSG00000060579	Fhit	AW045638|Fra14A2	fragile histidine triad gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-68683482-2	chr7	68683382	68683582	+	874.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	65026.0	NR_003648	384639.0	Mm.261760	NM_001013781		Gm5334	EG384639	tetraspanin 7 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-40131220-2	chr15	40131120	40131320	+	706.375	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3145.0	NM_001256056	328531.0	Mm.60703	NM_001256056	ENSMUSG00000094112	9330182O14Rik	-	RIKEN cDNA 9330182O14 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115977869-4	chr5	115977764	115977964	+	964.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007708, intron 27 of 46)	ORR1D2|LTR|ERVL-MaLR	46564.0	NM_031869	19079.0	Mm.458152	NM_031869	ENSMUSG00000029513	Prkab1	1300015D22Rik|AU021155|E430008F22	protein kinase, AMP-activated, beta 1 non-catalytic subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153120306-4	chr2	153120197	153120397	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001172117, intron 1 of 12)	L1MA4|LINE|L1	11829.0	NM_010407	15162.0	Mm.715	NM_010407	ENSMUSG00000003283	Hck	AI849071|Bmk	hemopoietic cell kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-41274643-2	chr4	41274543	41274743	+	757.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026872, intron 1 of 28)	intron (NM_026872, intron 1 of 28)	492.0	NM_026872	68926.0	Mm.41864	NM_026872	ENSMUSG00000028433	Ubap2	1190005K07Rik|AA408600|AU045235|UBAP-2|mKIAA1491	ubiquitin-associated protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45023202-1	chr7	45023102	45023302	+	573.0	f1_balb.idr	Intergenic	PB1D10|SINE|Alu	3605.0	NM_001360133	20130.0	Mm.389894	NM_009101	ENSMUSG00000038387	Rras	AI573426	related RAS viral (r-ras) oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-24442482-4	chr7	24442362	24442562	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199013, intron 1 of 2)	intron (NM_199013, intron 1 of 2)	3220.0	NM_199013	210145.0	Mm.33811	NM_199013	ENSMUSG00000062028	Irgc1	F630044M05Rik|Gm1102|Gm474|Ifgge|Iigp5|Irgc	immunity-related GTPase family, cinema 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-57940192-4	chr9	57940134	57940334	+	832.700012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011352)	promoter-TSS (NM_011352)	99.0	NM_011352	20361.0	Mm.335187	NM_011352	ENSMUSG00000038264	Sema7a	2900057C09Rik|CDw108|H-Sema-L|M-Sema-L|Semal	sema domain, immunoglobulin domain (Ig), and GPI membrane anchor, (semaphorin) 7A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31154779-2	chr14	31154679	31154879	+	812.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_138672, intron 23 of 68)	intron (NM_138672, intron 23 of 68)	13862.0	NM_138672	192187.0	Mm.220821	NM_138672	ENSMUSG00000042286	Stab1	FEEL-1|FELE-1|MFEEL-1|MS-1|STAB-1|mKIAA0246	stabilin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-40271581-2	chr4	40271481	40271681	+	576.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033305, intron 3 of 3)	intron (NM_001033305, intron 3 of 3)	-1740.0	NM_134097	106021.0	Mm.251548	NM_134097	ENSMUSG00000036822	Topors	AW105885|LUN|TP53BPL|p53BP3/LUN	topoisomerase I binding, arginine/serine-rich	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-63997260-1	chr7	63997160	63997360	+	696.5	f0_balb.idr	Intergenic	Intergenic	-58345.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-41385656-4	chr10	41385559	41385759	+	999.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64699.0	NM_001277229	268294.0	Mm.258475	NM_153398	ENSMUSG00000019826	Zbtb24	BC055367|Bif1|Bsg1|ZNF450	zinc finger and BTB domain containing 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-57456798-2	chr17	57456698	57456898	+	567.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355722, intron 17 of 22)	Lx3A|LINE|L1	88516.0	NM_001104591	224916.0	Mm.469889	NM_001104591	ENSMUSG00000090655	Vmn2r120	EG224916	vomeronasal 2, receptor 120	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6870192-2	chr19	6870092	6870292	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR19-int|LTR|ERVK	-11981.0	NM_001081291	78317.0	Mm.329596	NM_198008	ENSMUSG00000047810	Ccdc88b	2610041P08Rik|Ccdc88	coiled-coil domain containing 88B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140771888-4	chr5	140771784	140771984	+	950.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010302, intron 2 of 3)	intron (NM_010302, intron 2 of 3)	47757.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75576868-2	chr11	75576768	75576968	+	583.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_173388, exon 14 of 14)	3' UTR (NM_173388, exon 14 of 14)	-11211.0	NM_008850	18738.0	Mm.3128	NM_008850	ENSMUSG00000017781	Pitpna	Pitpn|vb|vibrator	phosphatidylinositol transfer protein, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88603942-4	chr3	88603835	88604035	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12272.0	NM_001198911	16800.0	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-82349081-2	chr15	82348981	82349181	+	799.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_026914)	TTS (NM_026914)	3035.0	NM_026914	69029.0	Mm.260042	NM_026914	ENSMUSG00000022452	Smdt1	1500032L24Rik|Emre	single-pass membrane protein with aspartate rich tail 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94427707-2	chr10	94427607	94427807	+	779.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 1 of 4)	intron (NM_001359762, intron 1 of 4)	-87150.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-7501875-3	chr3	7501770	7501970	+	984.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1556.0	NM_173181	67306.0	Mm.332366	NM_173181	ENSMUSG00000043542	Zc2hc1a	3110050N22Rik|AI790358|AU023959|Fam164a	zinc finger, C2HC-type containing 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-32305178-2	chr19	32305078	32305278	+	871.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 2 of 9)	intron (NM_144792, intron 2 of 9)	44138.0	NM_001168525	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-20886502-4	chr18	20886318	20886518	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177038, intron 1 of 28)	MTEa|LTR|ERVL-MaLR	9660.0	NM_029491	75964.0	Mm.273769	NM_029491	ENSMUSG00000033382	Trappc8	5033403J15Rik|AI845423|D030074E01Rik|Trs85|mKIAA1012	trafficking protein particle complex 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133307611-2	chr4	133307501	133307701	+	556.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_199306, intron 6 of 15)	intron (NM_199306, intron 6 of 15)	-29811.0	NR_110978	52174.0	Mm.244748	NM_025667	ENSMUSG00000028857	Tmem222	5730406H10Rik|AA409341|D4Ertd196e	transmembrane protein 222	protein-coding	1.88467283770093	1.01955147618686	0.998672835503467	1.99687064676139	1.59696433877936	2.05328038722483	1.00333399379538	2.09748342124561	0.556665898487203	0.662257971323538	0.991056031673253
Merged-chr3-56270628-3	chr3	56270530	56270730	+	712.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-86929.0	NM_030595	26422.0	Mm.384353	NM_030595	ENSMUSG00000027799	Nbea	Lyst2|mKIAA1544	neurobeachin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-53179003-4	chr18	53178976	53179176	+	609.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357463, intron 1 of 15)	B1_Mur4|SINE|Alu	2784.0	NM_026386	67804.0	Mm.252171	NM_026386	ENSMUSG00000034484	Snx2	0610030A03Rik	sorting nexin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-46148765-4	chr16	46148651	46148851	+	766.21875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	6326.0	NM_001304528	11615.0	Mm.330692	NM_001304528	ENSMUSG00000048087	Gm4737	AL024110|EG11615	predicted gene 4737	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-99937451-3	chr4	99937364	99937564	+	954.138916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028132, intron 1 of 10)	intron (NM_028132, intron 1 of 10)	8013.0	NM_028132	72157.0	Mm.217764	NM_028132	ENSMUSG00000025791	Pgm2	2610020G18Rik|AA407108|AI098105|Pgm-2|Pgm1	phosphoglucomutase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-72132017-2	chr8	72131917	72132117	+	657.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3275.0	NM_001001491	326618.0	Mm.295124	NM_001001491	ENSMUSG00000031799	Tpm4	2610528G24Rik|Tpm4.2|Tpm4.2cy	tropomyosin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-98085576-4	chr7	98085473	98085673	+	999.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008663, intron 15 of 48)	intron (NM_008663, intron 15 of 48)	23675.0	NM_001256082	17921.0	Mm.1403	NM_008663	ENSMUSG00000030761	Myo7a	Hdb|Myo7|USH1B|nmf371|polka|sh-1|sh1	myosin VIIA	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-52319283-4	chr12	52319226	52319426	+	956.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RCHARR1|DNA|hAT-Charlie	161283.0	NR_136881	102638611.0	Mm.363799	NR_136881	ENSMUSG00000111982	Gm35135	-	predicted gene, 35135	ncRNA	2.32691269136595	1.9962101375504	1.7222764737519	2.55771373640374	2.44781991074154	2.84563873976395	3.00820112525267	2.75782100371455	1.24925804284458	0.114594807405251	0.530743892265557
Merged-chr17-26230845-2	chr17	26230745	26230945	+	619.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001206335, intron 1 of 12)	intron (NM_001206335, intron 1 of 12)	13397.0	NM_207217	106581.0	Mm.28844	NM_207217	ENSMUSG00000024187	Fam234a	Itfg3	family with sequence similarity 234, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-11286084-4	chr16	11285982	11286182	+	923.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger7|DNA|TcMar-Tigger	-27727.0	NM_011608	21935.0	Mm.12935	NM_011608	ENSMUSG00000022496	Tnfrsf17	BCM|BCMA|Tnfrsf13|Tnfrsf13a	tumor necrosis factor receptor superfamily, member 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35435002-3	chr17	35434935	35435135	+	854.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4120.0	NM_010394	15018.0	Mm.431282	NM_010394	ENSMUSG00000060550	H2-Q7	H-2Q7|Ped|Q9|Qa-2|Qa-7|Qa7	histocompatibility 2, Q region locus 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-94607621-2	chr11	94607521	94607721	+	820.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5835.0	NM_153807	264895.0	Mm.386885	NM_153807	ENSMUSG00000076435	Acsf2	-	acyl-CoA synthetase family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-181305088-4	chr2	181304981	181305181	+	868.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9419.0	NM_009133	20262.0	Mm.2319	NM_009133	ENSMUSG00000027581	Stmn3	9330161A03Rik|AI604839|R75323|Sclip	stathmin-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100741889-2	chr11	100741789	100741989	+	732.833313	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081194, exon 16 of 17)	exon (NM_001081194, exon 16 of 17)	-3674.0	NM_001305003	19345.0	Mm.29829	NM_024456	ENSMUSG00000019173	Rab5c	AI326010|Rabl	RAB5C, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-84950121-2	chr15	84950021	84950221	+	556.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033273, intron 8 of 9)	intron (NM_001033273, intron 8 of 9)	1502.0	NR_037206	100526461.0		NR_037206	ENSMUSG00000080441	Mir1249	mir-1249|mmu-mir-1249	microRNA 1249	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-21221087-3	chr5	21220985	21221185	+	923.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153365, intron 6 of 26)	intron (NR_153365, intron 6 of 26)	34818.0	NM_001359877	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-145294030-2	chr7	145293930	145294130	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-6879.0	NM_145379	211577.0	Mm.215151	NM_145379	ENSMUSG00000031070	Mrgprf	BC019711|Mgrc|MrgF	MAS-related GPR, member F	protein-coding	1.40389611602104	1.71586884555099	1.52171860367389	1.81938493797275	0.940371526599946	0.994725093108574	1.5338607597467	2.00742505862829	-0.530299499785536	0.668902650098601	0.993418137797039
Merged-chr17-32403581-3	chr17	32403478	32403678	+	854.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347343)	promoter-TSS (NM_001347343)	4.0	NM_178785	320484.0	Mm.122284	NM_178785	ENSMUSG00000052142	Rasal3	A430107D22Rik	RAS protein activator like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-81342936-2	chr7	81342836	81343036	+	572.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009092, intron 4 of 4)	intron (NM_009092, intron 4 of 4)	2298.0	NM_009092	20068.0	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-80483083-4	chr17	80482970	80483170	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2617.0	NM_009231	20662.0	Mm.60975	NM_009231	ENSMUSG00000024241	Sos1	4430401P03Rik|9630010N06|AI449023	SOS Ras/Rac guanine nucleotide exchange factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-33160636-2	chr12	33160536	33160736	+	948.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_028139, intron 2 of 3)	intron (NM_028139, intron 2 of 3)	12950.0	NM_028139	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	0.120330396867855	0.145061759155601	0.137052932846882	0.130813077793713	0.434336608258474	0.146855225291587	1.09112570394291	0.94177066103645	4.37442141930525	0.0296234956282228	1
Merged-chr3-123506420-2	chr3	123506322	123506522	+	694.200012	f1_balb.idr|f1_c57bl6.idr	exon (NM_008939, exon 11 of 11)	exon (NM_008939, exon 11 of 11)	1644.0	NR_028573	100306957.0	Mm.260791	NR_028573	ENSMUSG00000092730	Snora24	ACA24	small nucleolar RNA, H/ACA box 24	snoRNA	1.35846637817462	2.73155611674517	2.8331700143564	2.75352724172345	1.96199527913088	2.85688354870824	2.65981131472999	2.57746807273944	0.0156565724141883	0.985492860661435	0.998431161219273
Merged-chr2-170116894-3	chr2	170116794	170116994	+	791.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033299, intron 2 of 5)	intron (NM_001033299, intron 2 of 5)	14326.0	NM_001033299	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	-1.18818405238703	-1.1621273909064	-1.17340543805306	-1.18266956177369	-0.508992984534732	-1.15968339104222	-1.17085233538681	-1.18101128805699	2.76775479490304	0.421927342186551	1
Merged-chr19-10295990-2	chr19	10295890	10296090	+	812.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_198114, intron 1 of 19)	intron (NM_198114, intron 1 of 19)	8887.0	NM_198114	269060.0	Mm.329718	NM_198114	ENSMUSG00000035735	Dagla	Nsddr	diacylglycerol lipase, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-122807857-1	chr10	122807757	122807957	+	558.0	f1_c57bl6.idr	intron (NM_001110218, intron 3 of 9)	intron (NM_001110218, intron 3 of 9)	128542.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	-1.20406370813143	-1.56956373024278	-1.57884638916872	-1.58647144159385	-1.598104728449	-1.56755213932999	-1.57674499865798	-1.58510656085539	-1.70745470802464	0.626337835847419	1
Merged-chr14-61744135-3	chr14	61744022	61744222	+	983.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-61749.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	2.50658117727661	2.36940893567623	2.71710310249047	2.64120980801435	3.30324404943833	3.32806663861428	2.85245028657878	3.04654426093535	1.10214601646248	0.0964414319205127	0.48212679174263
Merged-chr2-78046549-2	chr2	78046449	78046649	+	577.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4628.0	NR_108098	78158.0	Mm.78473	NR_108098	ENSMUSG00000085431	4930440I19Rik	-	RIKEN cDNA 4930440I19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46517729-2	chr19	46517629	46517829	+	626.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16081.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-157016781-4	chr1	157016678	157016878	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-77152.0	NM_001357391	78255.0	Mm.28376	NM_023884	ENSMUSG00000026594	Ralgps2	1810020P17Rik|2210408F11Rik|4921528G01Rik|9130014M22Rik|AU043409|AW046161	Ral GEF with PH domain and SH3 binding motif 2	protein-coding	0.639448746574376	0.275062016704385	0.268105191874429	0.262721894398562	0.535193030360294	0.276627148991411	0.964364590368488	0.914162667833662	2.22303610813928	0.250489856793587	1
Merged-chr4-155089599-2	chr4	155089499	155089699	+	680.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356327, intron 3 of 12)	intron (NM_001356327, intron 3 of 12)	2995.0	NM_001356327	76866.0	Mm.200590	NM_001081100	ENSMUSG00000029049	Morn1	2900057D20Rik|4930417P05Rik|AU042805	MORN repeat containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44317863-1	chr9	44317763	44317963	+	1000.0	f1_balb.idr	intron (NM_001359259, intron 1 of 13)	intron (NM_001359259, intron 1 of 13)	2419.0	NM_001359259	71764.0	Mm.491174	NM_027909	ENSMUSG00000032120	C2cd2l	1300006O23Rik|Tmem24	C2 calcium-dependent domain containing 2-like	protein-coding	0.140014208041195	0.388667715468267	-0.126790151840635	-0.130994956724748	-0.136953134857044	0.635856016837258	-0.1255898028856	-0.130259717249751	0.229182711765316	0.920888233853344	1
Merged-chr19-10603039-3	chr19	10602930	10603130	+	933.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145496, intron 1 of 16)	intron (NM_145496, intron 1 of 16)	1228.0	NM_145496	225913.0	Mm.374868	NM_145496	ENSMUSG00000034371	Tkfc	BC021917|Dak	triokinase, FMN cyclase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-35727179-2	chr5	35727079	35727279	+	798.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359895, intron 1 of 17)	intron (NM_001359895, intron 1 of 17)	2097.0	NM_194344	231147.0	Mm.290429	NM_194344	ENSMUSG00000036553	Sh3tc1	4631428G15|BC024909	SH3 domain and tetratricopeptide repeats 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-30566988-4	chr13	30566873	30567073	+	916.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21657.0	NM_025710	66694.0	Mm.181933	NM_025710	ENSMUSG00000038462	Uqcrfs1	4430402G14Rik|AI875505	ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-134179160-2	chr5	134179040	134179240	+	590.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-2373.0	NM_033572	94254.0	Mm.29508	NM_033572	ENSMUSG00000061979	Rcc1l	5730496C04Rik|AU019812|Wbscr16	reculator of chromosome condensation 1 like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-67101513-4	chr15	67101403	67101603	+	863.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	75379.0	NM_009177	20442.0	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	3.00927241163274	3.1313401087745	1.78614128998167	2.66158779625255	3.0338135090272	3.1541171532022	1.79958071703929	2.67548195265531	0.0379182137496155	0.962002179318637	0.998431161219273
Merged-chr4-8838257-3	chr4	8838163	8838363	+	863.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355382, intron 14 of 36)	(TTTTG)n|Simple_repeat|Simple_repeat	86939.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115569329-3	chr5	115569231	115569431	+	637.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172719, intron 1 of 57)	intron (NM_172719, intron 1 of 57)	4068.0	NM_172719	231659.0	Mm.153014	NM_172719	ENSMUSG00000041638	Gcn1l1	4932409G22|AL022764|G431004K08Rik|GCN1L|Gcn1|mKIAA0219	GCN1 general control of amino-acid synthesis 1-like 1 (yeast)	protein-coding	0.00473808061476882	0.0339149922301896	0.0245523533009744	0.0172016843709871	0.611611662445869	0.036000809941697	1.38213063806485	0.232067542067916	4.47675352887995	0.0257443473010655	1
Merged-chr8-126945911-4	chr8	126945801	126946001	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024214)	promoter-TSS (NM_024214)	20.0	NM_024214	67952.0	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-110268164-3	chr7	110268079	110268279	+	905.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009302, intron 6 of 11)	intron (NM_009302, intron 6 of 11)	46476.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-77267209-4	chr10	77267112	77267312	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_030262, exon 8 of 9)	exon (NM_030262, exon 8 of 9)	7912.0	NM_030262	80294.0	Mm.203556	NM_030262	ENSMUSG00000020260	Pofut2	2310011G23Rik|AI256847|BC003494|C21orf80|FUT13	protein O-fucosyltransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71125663-4	chr17	71125562	71125762	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083934, intron 36 of 36)	intron (NM_001083934, intron 36 of 36)	-57870.0	NM_001357791	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-98660714-2	chr15	98660614	98660814	+	768.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080981, intron 1 of 16)	L2b|LINE|L2	2175.0	NM_001080981	74351.0	Mm.45725	NM_001080981	ENSMUSG00000003360	Ddx23	3110082M05Rik|4921506D17Rik	DEAD (Asp-Glu-Ala-Asp) box polypeptide 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-105171222-4	chr1	105171125	105171325	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-184782.0	NR_151539	100504568.0	Mm.321153	NR_151538	ENSMUSG00000097482	Gm17634	-	predicted gene, 17634	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-24859649-2	chr16	24859549	24859749	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 9 of 12)	intron (NM_178665, intron 9 of 12)	137794.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118645388-2	chr9	118645288	118645488	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 4 of 27)	intron (NM_133721, intron 4 of 27)	38679.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-143065008-2	chr5	143064908	143065108	+	836.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359851, intron 12 of 15)	intron (NM_001359851, intron 12 of 15)	48012.0	NM_207110	108086.0	Mm.381440	NM_080561	ENSMUSG00000045078	Rnf216	2810055G22Rik|AI647468|AU019462|C86502|F830018F18Rik|TRIAD3|UIP83|Ubce7ip1	ring finger protein 216	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-77925220-1	chr15	77925120	77925320	+	793.0	f1_balb.idr	intron (NM_019913, intron 2 of 3)	intron (NM_019913, intron 2 of 3)	3774.0	NM_019913	56551.0	Mm.291917	NM_019913	ENSMUSG00000005354	Txn2	2510006J11Rik|AI788873|Trx2	thioredoxin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-53742245-3	chr1	53742154	53742354	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35470.0	NM_001252070	627872.0	Mm.184692	NM_001252070	ENSMUSG00000096141	Dnah7a	Dnahc7|Dnahc7a|Gm992	dynein, axonemal, heavy chain 7A	protein-coding	3.49953339293869	4.02904457690564	3.67459573398371	4.06453417378733	2.18175759922211	2.31140213059204	1.43760764521397	1.37954660146663	-3.58507019277216	3.02596140410711e-06	0.000167049777269067
Merged-chr10-121426734-1	chr10	121426634	121426834	+	763.0	f0_c57.idr	intron (NM_138956, intron 1 of 4)	intron (NM_138956, intron 1 of 4)	49516.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-157407724-1	chr1	157407624	157407824	+	721.5	f0_balb.idr	intron (NM_177644, intron 1 of 17)	intron (NM_177644, intron 1 of 17)	-4628.0	NR_027984	69953.0	Mm.286863	NM_027274	ENSMUSG00000049881	2810025M15Rik	AI429618	RIKEN cDNA 2810025M15 gene	ncRNA	-0.121310333995987	-0.0612053799502385	-0.245926017851848	-0.248943956059619	0.280687876154583	-0.241108416834725	-0.245061112728457	0.154368258499193	1.88629546498853	0.418167980156455	1
Merged-chr2-122378688-2	chr2	122378588	122378788	+	741.099976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9770.0	NM_001013829	435684.0	Mm.458215	NM_001013829	ENSMUSG00000033256	Shf	-	Src homology 2 domain containing F	protein-coding	-0.546368915421199	-0.536114176353713	-0.539488670253753	-0.542082342424779	-0.545732781847454	-0.346327108837242	-0.0944793160927731	-0.129526355096655	3.34367101844009	0.197069224337931	1
Merged-chr8-20996326-2	chr8	20996226	20996426	+	657.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-29219.0	NM_183253	66298.0	Mm.482941	NM_183253	ENSMUSG00000074447	Defa21	2010016B13Rik|Defcr21	defensin, alpha, 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-95510585-2	chr9	95510485	95510685	+	798.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357977, intron 1 of 25)	intron (NM_001357977, intron 1 of 25)	1411.0	NM_001357975	67958.0	Mm.292742	NM_026476	ENSMUSG00000032407	U2surp	2610101N10Rik|AU023006|Sr140	U2 snRNP-associated SURP domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88139495-3	chr3	88139401	88139601	+	893.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2871.0	NM_001310593	17261.0	Mm.28184	NM_133665	ENSMUSG00000001419	Mef2d	C80750	myocyte enhancer factor 2D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-84642045-1	chr17	84641945	84642145	+	594.0	f1_balb.idr	intron (NM_172256, intron 5 of 12)	B3|SINE|B2	15546.0	NM_172256	213575.0	Mm.246119	NM_172256	ENSMUSG00000024253	Dync2li1	4933404O11Rik|CGI-60|D2lic|LIC3|mD2LIC	dynein cytoplasmic 2 light intermediate chain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-95310905-2	chr11	95310805	95311005	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001195004)	promoter-TSS (NM_001195004)	489.0	NR_155298	102640811.0	Mm.440938	NR_155298		Gm11520	-	predicted gene 11520	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-113590390-4	chr13	113590325	113590525	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28139.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117475154-4	chr8	117475054	117475254	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15889.0	NR_106046	102465653.0		NR_106046	ENSMUSG00000098483	Mir7078	Gm27386|mmu-mir-7078	microRNA 7078	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-25411259-2	chr15	25411159	25411359	+	877.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_027395, intron 1 of 1)	intron (NM_027395, intron 1 of 1)	2505.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-108627218-4	chr5	108627127	108627327	+	970.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359923, intron 1 of 22)	intron (NM_001359923, intron 1 of 22)	2550.0	NM_001359924	231580.0	Mm.276647	NM_153569	ENSMUSG00000062234	Gak	D130045N16Rik	cyclin G associated kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-119453409-2	chr13	119453309	119453509	+	937.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145457, intron 9 of 10)	B1_Mus1|SINE|Alu	-9350.0	NR_153825	67392.0	Mm.390641	NM_026127	ENSMUSG00000062822	4833420G17Rik	2210017J06Rik|5730533D17Rik|AW107518|C85193	RIKEN cDNA 4833420G17 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89160172-4	chr3	89160066	89160266	+	966.2333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008227)	promoter-TSS (NM_008227)	-9.0	NM_008227	15168.0	Mm.389461	NM_008227	ENSMUSG00000028051	Hcn3	BCNG-4|Bcng4|Hac3|Hcn4	hyperpolarization-activated, cyclic nucleotide-gated K+ 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-79768136-2	chr10	79768036	79768236	+	980.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 3 of 4)	intron (NR_038088, intron 3 of 4)	-1184.0	NR_027505	70294.0	Mm.466670	NM_144528	ENSMUSG00000035890	Rnf126	2610010O19Rik	ring finger protein 126	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-10839595-2	chr17	10839495	10839695	+	772.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016694)	promoter-TSS (NM_016694)	596.0	NM_027032	69310.0	Mm.18889	NM_027032	ENSMUSG00000037196	Pacrg	1700008H23Rik	PARK2 co-regulated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-63043396-2	chr17	63043296	63043496	+	714.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-162079.0	NM_010109	13640.0	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-86950370-2	chr12	86950270	86950470	+	551.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173735, intron 1 of 3)	intron (NM_173735, intron 1 of 3)	3027.0	NM_001289432	217732.0	Mm.22337	NM_173735	ENSMUSG00000034157	Cipc	2310044G17Rik|AI842544|AI853744|Kiaa1737|mKIAA1737	CLOCK interacting protein, circadian	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-122836252-4	chr4	122836152	122836352	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008917)	promoter-TSS (NM_008917)	25.0	NM_008917	19063.0	Mm.277719	NM_008917	ENSMUSG00000028657	Ppt1	9530043G02Rik|AA960502|C77813|CLN1|D4Ertd184e|INCL|PPT	palmitoyl-protein thioesterase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-144369586-3	chr2	144369447	144369647	+	835.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166640, intron 1 of 10)	intron (NM_001166640, intron 1 of 10)	512.0	NM_181417	228714.0	Mm.227925	NM_181417	ENSMUSG00000027425	Kat14	2510008M08Rik|ATAC2|AU023459|Csrp2bp|D2Ertd473e|D2Wsu131e|E430020F17	lysine acetyltransferase 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-130308661-3	chr4	130308574	130308774	+	752.861084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010174)	promoter-TSS (NM_010174)	-104.0	NM_010174	14077.0	Mm.388886	NM_010174	ENSMUSG00000028773	Fabp3	Fabph-1|Fabph-4|Fabph1|Fabph4|H-FABP|Mdgi	fatty acid binding protein 3, muscle and heart	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52079414-4	chr13	52079309	52079509	+	961.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17332.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-68238944-4	chr10	68238833	68239033	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023598, intron 3 of 9)	intron (NM_023598, intron 3 of 9)	39793.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	3.99350820276793	3.43313912091377	4.3428855285439	3.48339823306629	3.07271742188739	4.15033776029053	3.12307518865934	2.8991086410483	-0.688290878190006	0.222003893939225	0.713583934962101
Merged-chr5-92091851-3	chr5	92091753	92091953	+	671.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359197, intron 1 of 10)	intron (NM_001359197, intron 1 of 10)	-8109.0	NM_001080795	23881.0	Mm.290530	NM_011816	ENSMUSG00000029405	G3bp2	AA409541|E430034L04Rik|G3BP|mKIAA0660	GTPase activating protein (SH3 domain) binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-31067245-4	chr17	31067121	31067321	+	912.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009593, intron 2 of 14)	intron (NM_009593, intron 2 of 14)	9527.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	2.19696541104789	1.51106909688741	2.08274148290633	2.22765535733312	1.82745468661115	1.27161696467031	2.09896752848891	2.2392025874562	-0.330956987077645	0.742622250494182	0.998431161219273
Merged-chr10-85354535-3	chr10	85354442	85354642	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32272.0	NM_028709	74007.0	Mm.36544	NM_028709	ENSMUSG00000020042	Btbd11	6330404E16Rik	BTB (POZ) domain containing 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-104195965-2	chr11	104195865	104196065	+	998.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9638.0	NM_199019	237958.0	Mm.117063	NM_199019	ENSMUSG00000049506	Sppl2c	4933407P14Rik|IMP5	signal peptide peptidase 2C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-35732713-3	chr2	35732597	35732797	+	946.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35965.0	NM_001290639	69601.0	Mm.29629	NM_001001602	ENSMUSG00000026883	Dab2ip	2310011D08Rik|AI480459|Aip1|mKIAA1743	disabled 2 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-21698353-2	chr16	21698253	21698453	+	989.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1|SINE|Alu	-3688.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-57707431-3	chr6	57707327	57707527	+	879.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133737, intron 1 of 8)	MLT1F1|LTR|ERVL-MaLR	4972.0	NM_133737	71835.0	Mm.274904	NM_133737	ENSMUSG00000062190	Lancl2	1700003F10Rik	LanC (bacterial lantibiotic synthetase component C)-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-31734305-4	chr11	31734175	31734375	+	964.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62413.0	NM_001024919	69556.0	Mm.34183	NM_001024919	ENSMUSG00000044502	Bod1	2310022M17Rik|BOD2.1|Fam44b	biorientation of chromosomes in cell division 1	protein-coding	0.306441396996339	0.162362425466533	0.153787554372844	0.502292335606416	1.36089020402415	0.579623497102072	0.155688466133939	0.148267987684362	2.24806066854034	0.246217119138597	1
Merged-chr18-75006788-2	chr18	75006689	75006889	+	682.700012	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358306, intron 1 of 2)	B1F|SINE|Alu	950.0	NM_001001181	407819.0	Mm.29866	NM_001001181	ENSMUSG00000036299	BC031181	-	cDNA sequence BC031181	protein-coding	2.3527820899843	1.95939940202749	1.89837121807307	1.98389714217415	1.90367825941564	2.56874087928695	1.91203086080151	1.85823687894614	0.0807471609485564	0.929228730428936	0.998431161219273
Merged-chr3-87508440-4	chr3	87508322	87508522	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17156.0	NM_001083318	27049.0	Mm.219460	NM_012051	ENSMUSG00000003382	Etv3	AI414410|METS|Pe1	ets variant 3	protein-coding	6.04416956126575	5.70377381222052	6.50115779394117	5.63920902873277	5.76855335678182	5.99900944041284	5.48891493703957	5.75586242935991	-0.281814185209273	0.288467600951819	0.793815200967874
Merged-chr12-26465769-4	chr12	26465664	26465864	+	863.8916630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2-int|LTR|ERVL-MaLR	-3451.0	NM_020557	22169.0	Mm.271839	NM_020557	ENSMUSG00000020638	Cmpk2	1200004E04Rik|TDKI|Tyki	cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial	protein-coding	3.56053238851428	4.23062114411948	3.98221525742974	3.16123302235989	3.88075302800498	4.31455717721638	3.16964172751775	3.37656296574139	-0.0412920253305548	0.938163094690454	0.998431161219273
Merged-chr16-33668467-4	chr16	33668401	33668601	+	866.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15965.0	NM_175256	77446.0	Mm.245741	NM_172934	ENSMUSG00000075254	Heg1	4632417D23Rik|5530401I02Rik|9530025L16Rik|BC038614|Gm629	heart development protein with EGF-like domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-98956255-2	chr9	98956155	98956355	+	762.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_003248)	promoter-TSS (NR_003248)	648.0	NM_012020	26927.0	Mm.151239	NM_012020	ENSMUSG00000050397	Foxl2	AU045128|BPES|PINTO|Pfrk	forkhead box L2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-17211559-4	chr11	17211463	17211663	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178909)	promoter-TSS (NM_178909)	26.0	NM_025443	66249.0	Mm.27831	NM_025443	ENSMUSG00000020116	Pno1	1810003N24Rik|AA407421|AU015468|AU019495|AU042323|Emi3|Imi3	partner of NOB1 homolog	protein-coding	7.21715161646497	7.32646188083537	7.83806425296199	7.85825959149879	7.08646812196838	7.02022607700756	7.45064875755308	7.53227933177767	-0.311194968664425	0.0974304581380134	0.485184270921369
Merged-chr17-5626511-4	chr17	5626410	5626610	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	133910.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-47872713-4	chr8	47872807	47873007	+	902.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133791, intron 9 of 22)	intron (NM_133791, intron 9 of 22)	48425.0	NM_029383	75677.0	Mm.390033	NM_029383	ENSMUSG00000038064	Cldn22	2210404A22Rik|5330431C14Rik|9530051B05Rik	claudin 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-20719400-4	chr10	20719297	20719497	+	760.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013875, intron 1 of 12)	G-rich|Low_complexity|Low_complexity	5681.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-142153725-3	chr4	142153584	142153784	+	838.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109684, intron 3 of 6)	intron (NM_001109684, intron 3 of 6)	56524.0	NM_144531	71529.0	Mm.255986	NM_144531	ENSMUSG00000040606	Kazn	2310007B04Rik|9030409G11Rik|AI256607|AI666764|AW061099|Kaz|Kazrin	kazrin, periplakin interacting protein	protein-coding	-1.06932346315282	-1.04545378193536	-0.220844647149311	-1.06494782147003	-1.06867040657128	-1.04264807175102	-1.05547001227371	-1.06448932552894	-3.08190232315036	0.346744811462451	1
Merged-chr15-82992542-2	chr15	82992442	82992642	+	732.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30596.0	NM_028728	74039.0	Mm.32584	NM_028728	ENSMUSG00000058099	Nfam1	4921501M20Rik|Cnaip	Nfat activating molecule with ITAM motif 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-138322855-4	chr1	138322769	138322969	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49131.0	NM_177397	338375.0	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-44267327-2	chr10	44267227	44267427	+	748.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-1012.0	NM_001314013	11793.0	Mm.22264	NM_053069	ENSMUSG00000038160	Atg5	2010107M05Rik|3110067M24Rik|AW319544|Apg5l|Atg5l|C88337|Paddy	autophagy related 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-83697539-4	chr8	83697434	83697634	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177262, intron 1 of 21)	intron (NM_177262, intron 1 of 21)	1645.0	NM_177262	320795.0	Mm.213000	NM_177262	ENSMUSG00000057672	Pkn1	DBK|F730027O18Rik|PAK1|PRK1|Pkn|Prkcl1|Stk3	protein kinase N1	protein-coding	3.52676584346505	3.62267005734689	3.28117862083719	3.34116615952008	2.57262503206858	2.4310020711442	1.9172067514142	3.28440830980633	-1.36644733133923	0.0396001131039919	0.283260427477163
Merged-chr15-103281551-1	chr15	103281451	103281651	+	556.0	f0_balb.idr	intron (NM_019817, intron 1 of 8)	intron (NM_019817, intron 1 of 8)	-3574.0	NR_029766	724064.0		NR_029766	ENSMUSG00000065560	Mir148b	Mirn148b|mir-148b	microRNA 148b	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-152115597-4	chr2	152115496	152115696	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10072.0	NM_029688	76650.0	Mm.218639	NM_029688	ENSMUSG00000032802	Srxn1	1700127B04Rik|AI854065|AW488194|Npn3|Srx|Srx1|TX01	sulfiredoxin 1 homolog (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-74980790-3	chr8	74980641	74980841	+	713.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Arthur1A|DNA|hAT-Tip100	-12909.0	NM_001316753	70823.0	Mm.261739	NM_178017	ENSMUSG00000034518	Hmgxb4	4733401K04Rik|AI316803|Hmgb2l1	HMG box domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-66908395-1	chr17	66908295	66908495	+	600.0	f1_balb.idr	intron (NM_008984, intron 13 of 30)	intron (NM_008984, intron 13 of 30)	117840.0	NR_049205	100885844.0		NR_049205	ENSMUSG00000093508	Mir5709	Gm22041|mir-5709|mmu-mir-5709	microRNA 5709	ncRNA	-0.359422177770065	-0.811231036590447	-0.814471928285364	-0.816727043760355	-0.819903502276946	-0.808494398742237	-0.81382616339968	-0.394754792252693	-0.146442476954247	0.961813308845167	1
Merged-chr10-37222842-3	chr10	37222760	37222960	+	838.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-83934.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-14822968-2	chr8	14822868	14823068	+	686.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172910, intron 10 of 15)	intron (NM_172910, intron 10 of 15)	-65568.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-98509080-2	chr15	98508955	98509155	+	553.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm-int|LTR|ERVL-MaLR	10779.0	NR_034051	100217417.0	Mm.486440	NR_034051	ENSMUSG00000065336	Snora34	MBI-89	small nucleolar RNA, H/ACA box 34	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-138001904-2	chr4	138001795	138001995	+	712.0	f0_c57.idr|f1_c57bl6.idr	intron (NM_001355699, intron 1 of 32)	intron (NM_001355699, intron 1 of 32)	4070.0	NM_001355700	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	2.71454872566419	2.95361206337965	2.55068910485395	3.00982405228453	1.98627231325069	2.87916728308568	1.75051053204761	2.23729103494579	-1.11522445428592	0.156976960395878	0.613403374128879
Merged-chr11-87591982-4	chr11	87591861	87592061	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357901)	promoter-TSS (NM_001357901)	-205.0	NM_001357901	170749.0	Mm.399376	NM_133215	ENSMUSG00000018401	Mtmr4	AA596759|ESTM44|FYVE-DSP2|ZFYVE11|mKIAA0647	myotubularin related protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-109892873-4	chr9	109892753	109892953	+	750.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007658, exon 15 of 15)	3' UTR (NM_007658, exon 15 of 15)	3210.0	NR_106057	102465660.0		NR_106057	ENSMUSG00000098490	Mir7089	Gm27418|mmu-mir-7089	microRNA 7089	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-30834557-3	chr13	30834463	30834663	+	793.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025588, intron 23 of 27)	intron (NM_025588, intron 23 of 27)	85330.0	NM_013674	16364.0	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	0.709091861421383	0.405370025552203	0.393383321581755	1.72003686538665	0.370355963954617	1.16138956623733	0.396048804694301	0.772137962087575	-0.967512637594652	0.577505851091602	0.96585843058813
Merged-chr7-25659168-4	chr7	25659083	25659283	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138586)	promoter-TSS (NM_138586)	30.0	NR_104358	27998.0	Mm.27853	NM_138586	ENSMUSG00000061286	Exosc5	D7Wsu180e	exosome component 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-73236292-2	chr14	73236192	73236392	+	625.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009029, intron 17 of 26)	intron (NM_009029, intron 17 of 26)	-1599.0	NM_175116	67168.0	Mm.390681	NM_175116	ENSMUSG00000033446	Lpar6	2610302I02Rik|P2ry5|P2y5	lysophosphatidic acid receptor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-108517308-7	chr9	108517224	108517424	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175143, intron 1 of 9)	CpG	237.0	NM_175143	69232.0	Mm.335449	NM_175143	ENSMUSG00000006673	Qrich1	2610028H07Rik|b2b2404Clo	glutamine-rich 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-123718276-4	chr4	123718194	123718394	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_002445).2	promoter-TSS (NR_002445).2	-108.0	NM_001030274	595136.0	Mm.42805	NM_001030274	ENSMUSG00000028648	Ndufs5	AI256693	NADH dehydrogenase (ubiquinone) Fe-S protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165900265-3	chr2	165900139	165900339	+	740.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F1|SINE|Alu	-15401.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	-1.50578006401468	-1.47341050667617	-1.17515363242603	-1.49124015727368	-1.50350778094084	-1.47128922826211	-1.3269605056278	-1.48980085267657	-0.800720836253042	0.817773358996722	1
Merged-chr11-93816170-2	chr11	93816075	93816275	+	723.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4A|LINE|L1	69591.0	NM_001013375	217109.0	Mm.379350	NM_001013375	ENSMUSG00000054079	Utp18	6230425C22Rik|6430513M13|Wdr50	UTP18 small subunit processome component	protein-coding	-0.583449067377857	-1.02282152578373	-1.03400008326803	-1.03822883962362	-0.777224525718346	-1.02039908574442	-1.03146950288059	-1.03789690212328	-0.791518325477985	0.808258493497815	1
Merged-chr15-79028436-4	chr15	79028327	79028527	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_008197, exon 1 of 1)	5' UTR (NM_008197, exon 1 of 1)	215.0	NM_008197	14958.0	Mm.24350	NM_008197	ENSMUSG00000096210	H1f0	D130017D06Rik|H1(0)|H1fv	H1 histone family, member 0	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-15989100-1	chr7	15989000	15989200	+	581.0	f0_balb.idr	exon (NM_001081418, exon 5 of 14)	exon (NM_001081418, exon 5 of 14)	10395.0	NM_001081418	243842.0	Mm.440249	NM_001081418	ENSMUSG00000070808	Bicra	Gltscr1	BRD4 interacting chromatin remodeling complex associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-13363827-1	chr1	13363727	13363927	+	684.0	f0_balb.idr	intron (NM_008678, intron 1 of 22)	intron (NM_008678, intron 1 of 22)	8602.0	NM_001302702	17978.0	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-50214285-2	chr11	50214185	50214385	+	683.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-3465.0	NM_011018	18412.0	Mm.40828	NM_011018	ENSMUSG00000015837	Sqstm1	A170|OSF-6|Osi|STAP|STONE14|p62	sequestosome 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91372948-8	chr16	91372874	91373074	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001110498, exon 1 of 7)	5' UTR (NM_001110498, exon 1 of 7)	191.0	NM_001110498	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-45947706-2	chr10	45947606	45947806	+	678.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	140002.0	NR_040624	320363.0	Mm.123343	NR_040624	ENSMUSG00000110874	D030045P18Rik	-	RIKEN cDNA D030045P18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-129308363-1	chr3	129308263	129308463	+	545.0	f1_balb.idr	intron (NM_007934, intron 6 of 19)	intron (NM_007934, intron 6 of 19)	24386.0	NM_007934	13809.0	Mm.1193	NM_007934	ENSMUSG00000028024	Enpep	6030431M22Rik|APA|Bp-1/6C3|Ly-51|Ly51	glutamyl aminopeptidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-121462107-4	chr1	121462009	121462209	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029955, intron 9 of 23)	intron (NM_029955, intron 9 of 23)	31042.0	NM_029955	70829.0	Mm.25788	NM_027567	ENSMUSG00000026339	Ccdc93	4633402D15Rik|9230102M16Rik	coiled-coil domain containing 93	protein-coding	4.17789707486197	5.13319455312222	3.32292065674556	4.29303540821804	4.01868217753389	3.47531405697505	4.53438502104041	3.12258024192624	-0.639258336066069	0.227556708197847	0.720883308825321
Merged-chr17-24584683-1	chr17	24584583	24584783	+	839.0	f0_balb.idr	intron (NM_013630, intron 26 of 45)	Tigger6a|DNA|TcMar-Tigger	34733.0	NM_013630	18763.0	Mm.30435	NM_013630	ENSMUSG00000032855	Pkd1	PC1|mFLJ00285	polycystin 1, transient receptor poteintial channel interacting	protein-coding	0.500940564247338	0.776833166707099	0.746970847053345	0.517886130387251	1.7879225698366	1.28499971568762	1.09148667095	0.51964130710406	3.20171960976006	0.0543940227025385	0.342402667568236
Merged-chr3-69669353-1	chr3	69669253	69669453	+	1000.0	f0_balb.idr	Intergenic	Intergenic	-52702.0	NM_133787	97112.0	Mm.21062	NM_133787	ENSMUSG00000027787	Nmd3	C87860	NMD3 ribosome export adaptor	protein-coding	0.579034040719104	1.56895525767046	0.24160288925336	0.231855177169955	0.217720379772717	1.29879200146748	0.24435278409122	0.233572798107067	-0.750820199299511	0.817276281238321	0.998431161219273
Merged-chr14-73507826-4	chr14	73507763	73507963	+	822.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2186.0	NM_026119	67381.0	Mm.282888	NM_026119	ENSMUSG00000022109	Med4	2410046H15Rik|DRIP36|HSPC126|TRAP36|Vdirp|Vdrip	mediator complex subunit 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-36983905-2	chr15	36983805	36984005	+	772.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23497.0	NM_026521	68036.0	Mm.371631	NM_026521	ENSMUSG00000062397	Zfp706	3110006P09Rik|AA793007|AW536850|C77232|Znf706	zinc finger protein 706	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-62980888-4	chr9	62980723	62980923	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019663)	promoter-TSS (NM_019663)	56.0	NM_019663	56469.0	Mm.431253	NM_019663	ENSMUSG00000032405	Pias1	2900068C24Rik|Ddxbp1|GBP	protein inhibitor of activated STAT 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-21369715-3	chr11	21369609	21369809	+	951.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290634, intron 1 of 9)	intron (NM_001290634, intron 1 of 9)	920.0	NM_139297	216558.0	Mm.28877	NM_139297	ENSMUSG00000001891	Ugp2	UDPGP|UGPase	UDP-glucose pyrophosphorylase 2	protein-coding	0.462887491369067	-0.0447433602201361	-0.0491869214002968	0.342788660717048	0.297321243579158	-0.0437386953498991	-0.0482087366758132	0.10198375245377	-0.968272859327388	0.656681514170609	1
Merged-chr4-143288631-3	chr4	143288549	143288749	+	969.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010329, intron 1 of 5)	intron (NM_010329, intron 1 of 5)	10915.0	NM_010329	14726.0	Mm.2976	NM_010329	ENSMUSG00000028583	Pdpn	E11|Gp38|OTS-8|RANDAM-2|T1-alpha|T1a|T1alpha	podoplanin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-46012127-4	chr10	46012046	46012246	+	889.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	204442.0	NR_040624	320363.0	Mm.123343	NR_040624	ENSMUSG00000110874	D030045P18Rik	-	RIKEN cDNA D030045P18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-30155142-4	chr5	30155037	30155237	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178878)	promoter-TSS (NM_178878)	-116.0	NM_145558	231086.0	Mm.291463	NM_145558	ENSMUSG00000059447	Hadhb	4930479F15Rik|Mtpb|TP-beta	hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase (trifunctional protein), beta subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-111014550-2	chr10	111014407	111014607	+	564.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4441.0	NM_172554	320150.0	Mm.339281	NM_172554	ENSMUSG00000035798	Zdhhc17	A230053P19Rik|BB187739|D130071N24Rik|DHHC-17|Hip14	zinc finger, DHHC domain containing 17	protein-coding	1.32673563087637	2.10491388212857	1.1801539077012	2.17888821326957	1.64837851838636	2.12091869827185	2.16086246711471	2.09245022039881	0.649039941062525	0.536980580235743	0.953963493057627
Merged-chr10-5807723-3	chr10	5807617	5807817	+	825.355591	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2252.0	NM_025995	67141.0	Mm.197520	NM_025995	ENSMUSG00000019773	Fbxo5	2510044I10Rik|C85305|Emi1|Fbxo31	F-box protein 5	protein-coding	1.36001585287249	2.02818029882826	1.60680724427781	1.42148453966284	1.21754192324525	1.81197059236138	1.75090708677227	1.69713592663708	0.0211358130325637	0.984502669792896	0.998431161219273
Merged-chr14-46962944-1	chr14	46962844	46963044	+	552.0	f1_balb.idr	intron (NM_001037221, intron 2 of 12)	ORR1D2|LTR|ERVL-MaLR	-8016.0	NR_105813	102465206.0		NR_105813	ENSMUSG00000099036	Mir378c	Gm27930|mmu-mir-378c	microRNA 378c	ncRNA	1.54397325653967	1.73360688092704	2.15383616712465	1.06374452832498	1.99227089414114	2.34918922954379	1.08688622544066	1.77206737135257	0.549241656524087	0.633516710154309	0.982417279970648
Merged-chr7-15920596-2	chr7	15920539	15920739	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009156, intron 1 of 5)	intron (NM_009156, intron 1 of 5)	1732.0	NM_009156	20364.0	Mm.42829	NM_009156	ENSMUSG00000041571	Selenow	Sepw1|selW	selenoprotein W	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-112142696-3	chr13	112142547	112142747	+	649.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-145804.0	NM_001168403	77318.0	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-18968551-4	chr17	18968462	18968662	+	688.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPLTR3-int|LTR|ERVK	54240.0	NM_001104549	627367.0	Mm.384131	NM_001104549	ENSMUSG00000091491	Vmn2r97	EG627367|Vn2r97	vomeronasal 2, receptor 97	protein-coding	1.78492187689565	1.26134223836441	1.56759761058025	0.638541444013674	0.622286657848684	0.667239977490791	1.35612632829904	0.640520630207265	-2.13627648335852	0.180255940906396	0.652400938596829
Merged-chr9-101076198-2	chr9	101076098	101076298	+	984.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001100451, intron 1 of 1)	intron (NM_001100451, intron 1 of 1)	1436.0	NM_001100451	77853.0	Mm.326206	NM_001100451	ENSMUSG00000066415	Msl2	E130103E02Rik|Msl2l1|Rnf184	MSL complex subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90522107-4	chr2	90521996	90522196	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	MIRb|SINE|MIR	-42922.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-57762703-3	chr19	57762601	57762801	+	964.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181415, intron 24 of 28)	intron (NM_181415, intron 24 of 28)	151667.0	NM_181415	226255.0	Mm.245340	NM_181415	ENSMUSG00000054843	Atrnl1	AI504415|AW555641|Alp|Atrnl|Atrnlp	attractin like 1	protein-coding	-1.36015291771705	-1.32842431658676	-1.33874579108173	-1.34722415754512	-1.35969949349639	-1.32618761000664	-1.33640923549635	-0.791042329471244	2.42373733289067	0.484013421080845	1
Merged-chr19-45045306-2	chr19	45045206	45045406	+	676.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001195265, intron 1 of 15)	intron (NM_001195265, intron 1 of 15)	466.0	NM_001195265	100503041.0	Mm.329877	NM_177605	ENSMUSG00000074818	Pdzd7	9130207N01|EG435601|Pdzk7	PDZ domain containing 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70673670-4	chr8	70673566	70673766	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015816, intron 1 of 4)	CpG	435.0	NM_015816	50783.0	Mm.248188	NM_015816	ENSMUSG00000031848	Lsm4	-	LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	5.11327679560139	4.6596235555368	4.56406775634066	4.44368160867118	4.64020457860331	5.09509581666274	4.38047053987585	4.60615356986969	-0.0322062189134593	0.929539992607751	0.998431161219273
Merged-chr1-105922043-4	chr1	105921945	105922145	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	68237.0	NR_151625	635504.0	Mm.359717	NR_151625		Gm7160	EG635504	predicted gene 7160	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-126084954-2	chr4	126084891	126085091	+	765.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172701, intron 7 of 9)	intron (NM_172701, intron 7 of 9)	-11662.0	NM_001163266	116748.0	Mm.41865	NM_138721	ENSMUSG00000050188	Lsm10	-	U7 snRNP-specific Sm-like protein LSM10	protein-coding	1.11657256891525	1.29692780544684	0.591149614978457	0.58210842173311	1.40295733277727	0.605293327256626	1.46867759726237	0.583695831165439	0.639463224852465	0.700453285798384	0.998431161219273
Merged-chr6-102226384-2	chr6	102226284	102226484	+	725.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008779, intron 12 of 21)	RMER1B|Other|Other	-39716.0	NR_131018	75893.0	Mm.2968	NR_131017	ENSMUSG00000107563	4930587E11Rik	4930523E13Rik|Gm44188	RIKEN cDNA 4930587E11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-74332487-4	chr1	74332392	74332592	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019999)	promoter-TSS (NM_019999)	-118.0	NM_019999	56695.0	Mm.384726	NM_019999	ENSMUSG00000026179	Pnkd	2210013N15Rik|2810403H05Rik|AI854243|Brp17|MNCb-5687|MR-1|Tahccp2	paroxysmal nonkinesiogenic dyskinesia	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-160237548-3	chr2	160237441	160237641	+	941.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	89953.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-85571467-4	chr3	85571379	85571579	+	942.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2650.0	NM_144896	229487.0	Mm.52275	NM_144896	ENSMUSG00000028085	Gatb	9430026F02Rik|Pet112|Pet112l	glutamyl-tRNA(Gln) amidotransferase, subunit B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-55301561-2	chr15	55301461	55301661	+	671.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6189.0	NM_181277	12818.0	Mm.297859	NM_181277	ENSMUSG00000022371	Col14a1	5730412L22Rik|AW108078	collagen, type XIV, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-55732867-2	chr16	55732767	55732967	+	659.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	89271.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-105971414-2	chr12	105971285	105971485	+	643.099976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38878.0	NM_011705	22367.0	Mm.2981	NM_011705	ENSMUSG00000021115	Vrk1	51PK	vaccinia related kinase 1	protein-coding	1.03363801858718	0.636559615727265	1.56840322045993	0.616157477247752	0.918462785896341	0.862067683801953	1.49218694541244	0.809645514810228	0.0760969295566209	0.959124421798961	0.998431161219273
Merged-chr8-120665348-2	chr8	120665248	120665448	+	637.924988	f1_balb.idr|f1_c57bl6.idr	intron (NM_010926, intron 1 of 4)	intron (NM_010926, intron 1 of 4)	2764.0	NM_010926	18117.0	Mm.2136	NM_010926	ENSMUSG00000031819	Emc8	Cox4nb|Fam158b|Noc4	ER membrane protein complex subunit 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-107922749-2	chr7	107922649	107922849	+	772.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1VL2|LINE|L1	-10773.0	NM_146775	258771.0	Mm.451662	NM_146775	ENSMUSG00000095212	Olfr473	MOR204-4	olfactory receptor 473	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-85752423-3	chr1	85752319	85752519	+	649.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_106172)	TTS (NR_106172)	471.0	NR_106172	102466882.0		NR_106172	ENSMUSG00000098634	Mir8096	Gm27479|mmu-mir-8096	microRNA 8096	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-8866324-5	chr10	8866194	8866394	+	763.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 1 of 19)	intron (NM_175155, intron 1 of 19)	19776.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-88276452-2	chr7	88276352	88276552	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1633.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-120762973-4	chr14	120762881	120763081	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-148213.0	NM_023579	70572.0	Mm.221452	NM_023579	ENSMUSG00000030662	Ipo5	1110011C18Rik|5730478E03Rik|AA409333|C76941|IMB3|Kpnb3|Ranbp5|imp5	importin 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16913197-2	chr7	16913097	16913297	+	732.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	6707.0	NM_008967	19222.0	Mm.287572	NM_008967	ENSMUSG00000043017	Ptgir	IP|PGI2	prostaglandin I receptor (IP)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-89077245-2	chr15	89077145	89077345	+	690.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026485, intron 1 of 9)	MLT1A|LTR|ERVL-MaLR	1181.0	NM_001355617	67976.0	Mm.284710	NM_026485	ENSMUSG00000015363	Trabd	5730502D15Rik|AL023039	TraB domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-103197535-1	chr4	103197435	103197635	+	1000.0	f0_balb.idr	intron (NM_001356276, intron 8 of 11)	intron (NM_001356276, intron 8 of 11)	17641.0	NM_001356276	242585.0	Mm.281800	NM_177732	ENSMUSG00000028521	Slc35d1	AI834976|C330011J09|UGTREL7|mKIAA0260	solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115474676-2	chr11	115474576	115474776	+	641.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361594)	promoter-TSS (NM_001361594)	-991.0	NM_177778	276905.0	Mm.38019	NM_177778	ENSMUSG00000057219	Armc7	A630084C13|BC023126	armadillo repeat containing 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-143985263-4	chr1	143985178	143985378	+	863.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18871.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-145729769-4	chr3	145729694	145729894	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28898.0	NM_026993	69219.0	Mm.234247	NM_026993	ENSMUSG00000028194	Ddah1	2410006N07Rik|2510015N06Rik|AI987801|AW050362	dimethylarginine dimethylaminohydrolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-20836773-4	chr14	20836679	20836879	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008873, intron 1 of 10)	intron (NM_008873, intron 1 of 10)	117.0	NM_008873	18792.0	Mm.4183	NM_008873	ENSMUSG00000021822	Plau	u-PA|uPA	plasminogen activator, urokinase	protein-coding	5.41834694059879	5.1413384373323	5.02306169754407	4.31059215875677	5.60458004114051	6.23978517691348	6.39535879772416	5.13518813895795	1.01589187231934	0.00299801089001204	0.045378639182125
Merged-chr6-116001861-2	chr6	116001761	116001961	+	613.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6856.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-72492790-4	chr8	72492702	72492902	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177766)	promoter-TSS (NM_177766)	-188.0	NM_177766	270066.0	Mm.291461	NM_177766	ENSMUSG00000019731	Slc35e1	6030458H05|AA408278	solute carrier family 35, member E1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-18836623-2	chr2	18836523	18836723	+	665.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34805.0	NR_131254	66774.0	Mm.87075	NR_131254	ENSMUSG00000097638	Carlr	4933439G12Rik|Carl	cardiac and apoptosis-related long non-coding RNA	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-73068244-4	chr15	73068166	73068366	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7062.0	NM_001164643	76510.0	Mm.158902	NM_029640	ENSMUSG00000047921	Trappc9	1810044A24Rik|2900005P22Rik|4632408O18Rik|Ibp|Nibp|TRS130|mKIAA1882	trafficking protein particle complex 9	protein-coding	-0.038906797349027	-0.0169392658379135	-0.024060224201679	0.158855584930587	0.605475947776328	0.998166756977576	-0.0224835186485298	-0.0286321283531361	3.39642842569344	0.117825276814771	1
Merged-chr2-4569332-1	chr2	4569232	4569432	+	555.0	f0_balb.idr	intron (NM_001177844, intron 2 of 11)	intron (NM_001177844, intron 2 of 11)	9578.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-27280240-1	chr4	27280140	27280340	+	637.0	f1_balb.idr	Intergenic	RMER17A2|LTR|ERVK	-574791.0	NR_040656	75360.0	Mm.67233	NR_040656	ENSMUSG00000086257	4930548K13Rik	-	RIKEN cDNA 4930548K13 gene	ncRNA	-1.84371485578039	-1.81332821174849	-1.82251738371298	-1.83006564316449	-1.84158176955426	-1.81133687985023	-1.5312619047181	-1.82871450833159	1.60090129203521	0.64914985597185	1
Merged-chr1-167551861-1	chr1	167551761	167551961	+	632.0	f0_balb.idr	Intergenic	Intergenic	-46501.0	NM_009107	20183.0	Mm.3475	NM_009107	ENSMUSG00000015843	Rxrg	Nr2b3	retinoid X receptor gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-32353310-4	chr18	32353262	32353462	+	960.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-23855.0	NM_001083334	30948.0	Mm.4383	NM_009668	ENSMUSG00000024381	Bin1	ALP-1|Amphl|BRAMP-2|SH3P9	bridging integrator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80750090-1	chr7	80749990	80750190	+	642.0	f1_c57bl6.idr	intron (NM_016721, intron 14 of 37)	intron (NM_016721, intron 14 of 37)	53241.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	-2.18375600819439	-2.15556918946382	-2.16409311609999	-2.17109492323169	-2.18177734563694	-2.01960173909294	-2.16216348594872	-2.16984160310277	0.759018020146679	0.829933115115583	1
Merged-chr7-80114765-4	chr7	80114706	80114906	+	999.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173011, intron 1 of 10)	intron (NM_173011, intron 1 of 10)	544.0	NM_173011	269951.0	Mm.246432	NM_173011	ENSMUSG00000030541	Idh2	E430004F23|IDPm|Idh-2	isocitrate dehydrogenase 2 (NADP+), mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-39077015-2	chr15	39076915	39077115	+	740.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026778)	promoter-TSS (NM_026778)	83.0	NM_026778	68588.0	Mm.41556	NM_026778	ENSMUSG00000054196	Cthrc1	1110014B07Rik	collagen triple helix repeat containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-61394904-2	chr10	61394804	61395004	+	603.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11381.0	NM_013753	27355.0	Mm.269699	NM_013753	ENSMUSG00000020092	Pald1	MMPAL|Pald|mKIAA1274	phosphatase domain containing, paladin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-85229111-1	chr8	85229011	85229211	+	772.0	f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-1386.0	NM_146859	258858.0	Mm.354727	NM_146859	ENSMUSG00000051952	Olfr371	MOR141-3	olfactory receptor 371	protein-coding	-0.307719499767538	0.360817112278834	-0.296979725162757	-0.301004619564958	-0.30671793059183	-0.290616717664562	-0.295831814622967	0.470140876845699	0.324627527892289	0.89982063637916	1
Merged-chr13-23687440-3	chr13	23687228	23687428	+	780.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023422, intron 1 of 1)	intron (NM_023422, intron 1 of 1)	3129.0	NM_023422	68024.0	Mm.261676	NM_023422	ENSMUSG00000018102	Hist1h2bc	2610022J01Rik|H2bfs|R74621	histone cluster 1, H2bc	protein-coding	-0.812918163895958	-0.174354049092043	-0.806162519831849	-0.496138855704041	-0.812291056568506	-0.800263941935647	-0.80543647240272	-0.808258584045614	-3.15278192901271	0.28051632936314	1
Merged-chr6-51543967-3	chr6	51543868	51544068	+	785.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001127348)	promoter-TSS (NM_001127348)	-555.0	NM_028035	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-10988792-2	chr16	10988692	10988892	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019980, intron 1 of 3)	intron (NM_019980, intron 1 of 3)	4329.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5729227-8	chr19	5729044	5729244	+	854.8402710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181452, intron 1 of 1)	intron (NM_181452, intron 1 of 1)	522.0	NM_181452	17826.0	Mm.391142	NM_023166	ENSMUSG00000024939	Fam89b	1110021A21Rik|MMTV|Mtvr2	family with sequence similarity 89, member B	protein-coding	-0.0955561706200742	-0.343838752335969	-0.347912454608921	0.352965725719431	-0.0891956453881302	-0.342919257572651	-0.347014731277544	-0.350501747040731	-1.96539878450135	0.434930143273429	1
Merged-chr4-71338816-4	chr4	71338726	71338926	+	933.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-803898.0	NM_172694	230316.0	Mm.251188	NM_172694	ENSMUSG00000039270	Megf9	4933405H16Rik|9630025C07|Egfl5|mKIAA0818	multiple EGF-like-domains 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72096959-1	chr6	72096859	72097059	+	855.0	f0_balb.idr	promoter-TSS (NM_011375)	promoter-TSS (NM_011375)	-649.0	NM_001035228	20454.0	Mm.38248	NM_011375	ENSMUSG00000056091	St3gal5	3S-T|Siat9|[a]2	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-18794084-2	chr13	18793984	18794184	+	789.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172120, intron 6 of 28)	intron (NM_172120, intron 6 of 28)	76792.0	NM_172120	218035.0	Mm.27389	NM_172120	ENSMUSG00000041236	Vps41	AI317346|Vam2|mVam2	VPS41 HOPS complex subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-120822826-4	chr6	120822723	120822923	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007510)	promoter-TSS (NM_007510)	-125.0	NM_007510	11973.0	Mm.29045	NM_007510	ENSMUSG00000019210	Atp6v1e1	2410029D23Rik|Atp6e|Atp6e2|Atp6v1e|D6Ertd385e|Vma4|p31	ATPase, H+ transporting, lysosomal V1 subunit E1	protein-coding	6.11971305193673	6.8321311284926	6.4397751261411	5.69489357914149	7.2255740262364	7.2274519262058	7.35717358483957	7.1402554462147	0.973769495618532	6.77257862257512e-06	0.000333934513617765
Merged-chr6-34384255-4	chr6	34384165	34384365	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172398)	promoter-TSS (NM_172398)	18.0	NR_149754	67861.0	Mm.70371	NM_172398	ENSMUSG00000061758	Akr1b10	2310005E10Rik|Akr1b16	aldo-keto reductase family 1, member B10 (aldose reductase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-119167059-3	chr2	119166944	119167144	+	659.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177157)	promoter-TSS (NM_177157)	-744.0	NM_177157	320415.0	Mm.86373	NM_177157	ENSMUSG00000046814	Gchfr	2010323F13Rik|GFRP|P35	GTP cyclohydrolase I feedback regulator	protein-coding	0.831872211374521	1.819581917999	0.895162875948299	1.03606714311579	0.988015994980117	0.700534987353256	0.901774628358441	1.51821849922158	-0.589753838999545	0.669008453062937	0.993492649862288
Merged-chr18-83829084-1	chr18	83828984	83829184	+	550.0	f1_balb.idr	Intergenic	Intergenic	257478.0	NM_001081300	110796.0	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-17373573-2	chr17	17373371	17373571	+	997.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025934)	promoter-TSS (NM_025934)	-861.0	NM_025934	67045.0	Mm.35117	NM_025934	ENSMUSG00000023852	Riok2	2010110K24Rik|2410085M17Rik	RIO kinase 2	protein-coding	0.345386384820651	0.588442218467382	1.10095721897414	0.948118460917131	0.347156937622261	0.375316534650946	1.2142224034099	0.358446811031644	-0.668028455500783	0.716499334823461	1
Merged-chr1-136582782-3	chr1	136582685	136582885	+	855.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-42116.0	NM_177643	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-13189755-4	chr10	13189650	13189850	+	920.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181470, intron 3 of 10)	intron (NM_181470, intron 3 of 10)	3387.0	NM_181470	353258.0	Mm.117581	NM_181470	ENSMUSG00000019814	Ltv1	2610020N02Rik	LTV1 ribosome biogenesis factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-18318692-3	chr10	18318615	18318815	+	866.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-83734.0	NM_144820	215814.0	Mm.296565	NM_144820	ENSMUSG00000059554	Ccdc28a	1700009P13Rik|AI480677	coiled-coil domain containing 28A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-51606912-4	chr11	51606813	51607013	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010448)	promoter-TSS (NM_010448)	-32.0	NM_010448	15384.0	Mm.256875	NM_010448	ENSMUSG00000020358	Hnrnpab	3010025C11Rik|CBF-A|Cgbfa|Hnrpab	heterogeneous nuclear ribonucleoprotein A/B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-40415648-1	chr9	40415548	40415748	+	756.0	f1_balb.idr	intron (NM_001357617, intron 1 of 20)	intron (NM_001357617, intron 1 of 20)	-39231.0	NM_001357621	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	2.788446942336	2.75373928375299	2.4298500722775	2.7749116289831	1.82900976966744	2.0371866520005	3.11549587686851	2.37407541407328	-0.509189445054371	0.522337189778289	0.947836760490745
Merged-chr3-101551980-1	chr3	101551880	101552080	+	547.0	f1_c57bl6.idr	Intergenic	Intergenic	52727.0	NM_144900	11928.0	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding	0.123616410267188	0.0716703081913965	-0.410245437992515	-0.413163399084878	-0.276206981728312	-0.405596246309992	-0.409409970029324	-0.412654152184165	-2.61858827576364	0.302899583185532	1
Merged-chr1-93208150-2	chr1	93208050	93208250	+	713.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310428, intron 20 of 31)	intron (NM_001310428, intron 20 of 31)	-27747.0	NM_172463	208777.0	Mm.271897	NM_172463	ENSMUSG00000047793	Sned1	6720455I24Rik|AI197264|AI642697|D430044C15Rik|SST3|Snep	sushi, nidogen and EGF-like domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-94647998-2	chr8	94647898	94648098	+	709.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359093, intron 11 of 14)	MTD|LTR|ERVL-MaLR	-18602.0	NM_024191	107566.0	Mm.393247	NM_024191	ENSMUSG00000031776	Arl2bp	1700010P10Rik|1700027H16Rik|6330544B05Rik|AI482273|AI849834|BART|Bart1	ADP-ribosylation factor-like 2 binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-19759939-3	chr14	19759841	19760041	+	680.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008695, intron 2 of 20)	intron (NM_008695, intron 2 of 20)	8684.0	NM_008695	18074.0	Mm.20348	NM_008695	ENSMUSG00000021806	Nid2	AW547149|Ly111|NID-2|entactin-2|nidogen-2	nidogen 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-20388930-4	chr14	20388819	20389019	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134081)	promoter-TSS (NM_134081)	-9.0	NM_134081	108671.0	Mm.2871	NM_134081	ENSMUSG00000021811	Dnajc9	5330419I01Rik|AU020082	DnaJ heat shock protein family (Hsp40) member C9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-48247690-4	chr17	48247586	48247786	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021407)	promoter-TSS (NM_021407)	-43.0	NM_021407	58218.0	Mm.302438	NM_021407	ENSMUSG00000041754	Trem3	BB134760	triggering receptor expressed on myeloid cells 3	protein-coding	2.61962430440819	2.03134267623673	3.88028621390268	2.48930492575875	3.43899367782449	3.91202311977566	4.01941999693805	3.61063911448585	1.24307734867954	0.0544310904786054	0.342516201169043
Merged-chr3-88536772-4	chr3	88536665	88536865	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_035434)	promoter-TSS (NR_035434)	-383.0	NR_035434	100316808.0		NR_035434	ENSMUSG00000084728	Mir1905	Mirn1905|mmu-mir-1905	microRNA 1905	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-85553312-4	chr13	85553213	85553413	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	-263827.0	NM_145452	218397.0	Mm.259653	NM_145452	ENSMUSG00000021549	Rasa1	Gap|RasGAP|Rasa	RAS p21 protein activator 1	protein-coding	0.607730785478227	1.48850352339797	1.42363467215746	0.993237858335316	0.792031890815713	0.651442033052487	0.638344995869737	1.65708036215688	-0.580913531032214	0.706516466772502	0.998431161219273
Merged-chr13-36726916-1	chr13	36726816	36727016	+	754.0	f1_balb.idr	intron (NM_153529, intron 2 of 2)	intron (NM_153529, intron 2 of 2)	7561.0	NM_153529	68404.0	Mm.232930	NM_153529	ENSMUSG00000039114	Nrn1	0710008J23Rik|Cpg15|Nrn	neuritin 1	protein-coding	-1.58994551673671	-1.55912852307891	-1.56844783632235	-1.57610299769523	-1.18549093183599	-1.55710898902261	-1.56633814807757	-1.57473272746952	1.78703309985663	0.610309988231842	1
Merged-chr3-96716020-3	chr3	96715921	96716121	+	632.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028925, intron 9 of 14)	intron (NM_028925, intron 9 of 14)	-7461.0	NM_030094	78373.0	Mm.423186	NM_030094	ENSMUSG00000028100	Nudt17	2410015C20Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84212447-2	chr8	84212347	84212547	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_172503, exon 14 of 14)	exon (NM_172503, exon 14 of 14)	-3540.0	NR_037294	100526528.0		NR_037294	ENSMUSG00000105458	Mir3074-2	mir-3074-2|mmu-mir-3074-2	microRNA 3074-2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-97962739-4	chr16	97962667	97962867	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081684)	promoter-TSS (NM_001081684)	-145.0	NM_001320385	114565.0	Mm.474489	NM_175428	ENSMUSG00000046962	Zbtb21	5430437K12Rik|B430213I24Rik|Zfp295|Znf295|mKIAA1227	zinc finger and BTB domain containing 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-6807684-2	chr5	6807584	6807784	+	813.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163223, intron 2 of 3)	RMER19B|LTR|ERVK	-496480.0	NM_027603	70920.0	Mm.158494	NM_027603	ENSMUSG00000040514	Tex47	4921511H03Rik	testis expressed 47	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-57246148-3	chr17	57246029	57246229	+	747.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030084, intron 2 of 16)	Lx8|LINE|L1	1341.0	NM_001308074	78308.0	Mm.28468	NM_030084	ENSMUSG00000005823	Gpr108	1810015L19Rik|AA589464|C79132|Lustr2	G protein-coupled receptor 108	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83646890-1	chr6	83646790	83646990	+	806.0	f0_balb.idr	exon (NM_016751, exon 5 of 7)	exon (NM_016751, exon 5 of 7)	9226.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-5057089-3	chr10	5056991	5057191	+	701.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001079686, intron 41 of 54)	intron (NM_001079686, intron 41 of 54)	11972.0	NM_022027	64009.0	Mm.331626	NM_022027	ENSMUSG00000096054	Syne1	8B|A330049M09Rik|BE692247|C130039F11Rik|CPG2|KASH1|Myne1|mKIAA1756|myne-1	spectrin repeat containing, nuclear envelope 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-34143718-2	chr8	34143618	34143818	+	648.266663	f1_balb.idr|f1_c57bl6.idr	intron (NM_026609, intron 1 of 3)	intron (NM_026609, intron 1 of 3)	3021.0	NM_026609	68192.0	Mm.34212	NM_026609	ENSMUSG00000031513	Leprotl1	1110067H13Rik|1520402O14Rik|AI854296	leptin receptor overlapping transcript-like 1	protein-coding	0.109041330247724	0.660533448048656	0.614934350978484	0.118334514468906	1.03377332564184	0.132647971384433	0.12547111237383	0.119307166605378	0.175069317940859	0.934238636076351	1
Merged-chr11-49252241-2	chr11	49252141	49252341	+	802.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110148, intron 3 of 3)	PB1D10|SINE|Alu	1689.0	NM_001110150	17308.0	Mm.196933	NM_010794	ENSMUSG00000020346	Mgat1	Mgat-1	mannoside acetylglucosaminyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80388828-2	chr10	80388728	80388928	+	814.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1177.0	NM_198615	237400.0	Mm.268389	NM_198615	ENSMUSG00000048696	Mex3d	BC059858|Rkhd1	mex3 RNA binding family member D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41913060-2	chr19	41912960	41913160	+	785.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_023418, intron 1 of 3)	intron (NM_023418, intron 1 of 3)	1189.0	NM_023418	18648.0	Mm.16783	NM_023418	ENSMUSG00000011752	Pgam1	2310050F24Rik|Pgam-1	phosphoglycerate mutase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-88225499-2	chr7	88225282	88225482	+	571.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52703.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-120883024-3	chr10	120882916	120883116	+	857.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177092, intron 1 of 6)	intron (NM_177092, intron 1 of 6)	15955.0	NM_177092	320183.0	Mm.169755	NM_177092	ENSMUSG00000051236	Msrb3	D430026P16Rik|I-8-23|MsrB2	methionine sulfoxide reductase B3	protein-coding	0.306527572050412	0.337115603119514	0.327251093896898	1.04738686180091	0.974570573344581	0.339319599560047	0.329439253826878	1.40306987243869	1.42658680531126	0.460186752060886	1
Merged-chr9-66059419-2	chr9	66059319	66059519	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011149)	promoter-TSS (NM_011149)	-750.0	NM_011149	19035.0	Mm.335249	NM_011149	ENSMUSG00000032383	Ppib	AA408962|AA553318|AI844835|Cphn-2|Cphn2|CyP-20b	peptidylprolyl isomerase B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16313648-1	chr7	16313548	16313748	+	1000.0	f0_c57.idr	exon (NM_133234, exon 3 of 4)	exon (NM_133234, exon 3 of 4)	4065.0	NM_133234	170770.0	Mm.7660	NM_133234	ENSMUSG00000002083	Bbc3	PUMA|PUMA/JFY1	BCL2 binding component 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6098057-4	chr19	6097985	6098185	+	842.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001362427, exon 6 of 6)	3' UTR (NM_001362427, exon 6 of 6)	3666.0	NM_001362427	225852.0	Mm.301487	NM_001362427		Gm550	-	predicted gene 550	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-69087981-3	chr8	69087869	69088069	+	749.5	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	promoter-TSS (NM_007509)	promoter-TSS (NM_007509)	-767.0	NM_007509	11966.0	Mm.249096	NM_007509	ENSMUSG00000006273	Atp6v1b2	AI194269|AI790362|Atp6b2|HO57|R74844	ATPase, H+ transporting, lysosomal V1 subunit B2	protein-coding	2.83107641934801	3.44172834912729	2.86701015412579	1.55665263819337	3.16891816120754	3.20432673783996	3.56462146789165	2.79894046943962	0.650759149404601	0.37010942809051	0.863700645402606
Merged-chr14-75179460-4	chr14	75179356	75179556	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008879, intron 2 of 16)	intron (NM_008879, intron 2 of 16)	43031.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-87211718-2	chr1	87211618	87211818	+	681.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009604, exon 12 of 12)	3' UTR (NM_009604, exon 12 of 12)	-2193.0	NM_001347083	26987.0	Mm.227183	NM_023314	ENSMUSG00000026254	Eif4e2	2700069E09Rik|AI036339|AV129531|D0H0S6743E|Eif4el3	eukaryotic translation initiation factor 4E member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-97190573-4	chr13	97190473	97190673	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010422, intron 3 of 13)	LSU-rRNA_Hsa|rRNA|rRNA	7784.0	NM_010422	15212.0	Mm.27816	NM_010422	ENSMUSG00000021665	Hexb	-	hexosaminidase B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5787248-4	chr19	5787178	5787378	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	8703.0	NR_144621	109146451.0		NR_144621		Mascrna	-	Malat1-associated small cytoplasmic RNA	scRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-7903512-2	chr17	7903412	7903612	+	586.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-22488.0	NM_145968	72536.0	Mm.119680	NM_145968	ENSMUSG00000033450	Tagap	2610315E15Rik|TRD|Tcd-1|Tcd1|Tcd1a|tcs-1|tcs1	T cell activation Rho GTPase activating protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132305439-4	chr4	132305377	132305577	+	945.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2121.0	NM_001081651	242681.0	Mm.331927	NM_001081651	ENSMUSG00000089687	Rab42	9530096D07Rik|Rab42-ps	RAB42, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120124453-4	chr8	120124352	120124552	+	898.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172286, intron 1 of 12)	intron (NM_172286, intron 1 of 12)	10300.0	NM_001163761	234797.0	Mm.101958	NM_172286	ENSMUSG00000031824	6430548M08Rik	AW049007|Kiaa0513|mKIAA0513	RIKEN cDNA 6430548M08 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-14351734-2	chr16	14351634	14351834	+	845.7333369999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-9824.0	NM_008576	17250.0	Mm.196634	NM_008576	ENSMUSG00000023088	Abcc1	Abcc1a|Abcc1b|MRP|Mdrap|Mrp1	ATP-binding cassette, sub-family C (CFTR/MRP), member 1	protein-coding	-0.270044353026949	0.223825352901939	0.293171214863405	-0.264590269997416	-0.00446670542064719	-0.256054915370117	-0.260354743743889	-0.264015394272694	-2.03774940818866	0.410091113239826	1
Merged-chr2-167989319-2	chr2	167989219	167989419	+	853.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001080708, exon 13 of 22)	exon (NM_001080708, exon 13 of 22)	21274.0	NM_001080708	69553.0	Mm.68454	NM_001080708	ENSMUSG00000074577	Ripor3	2310033K02Rik|Fam65c|Gm124	RIPOR family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59509029-2	chr15	59508929	59509129	+	861.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026746, intron 4 of 6)	intron (NM_026746, intron 4 of 6)	134831.0	NM_001164604	68501.0	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-120072691-1	chr1	120072591	120072791	+	825.0	f1_balb.idr	intron (NM_019432, intron 1 of 1)	MIRc|SINE|MIR	1089.0	NM_019432	170706.0	Mm.24750	NM_019432	ENSMUSG00000050777	Tmem37	AI173373|AW540203|Pr|Pr1	transmembrane protein 37	protein-coding	2.10057721988425	3.10554815834191	3.50950992727366	3.86282003225436	1.93394662612472	3.50350424415626	2.32126672115409	3.4964304136495	-0.490983411354215	0.511723603139852	0.94512318675548
Merged-chr13-81401965-4	chr13	81401873	81402073	+	838.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 77 of 89)	MTE2b|LTR|ERVL-MaLR	231171.0	NM_054053	110789.0	Mm.288694	NM_054053	ENSMUSG00000069170	Adgrv1	Frings|Gpr98|Mass1|Mgr1|VLGR1	adhesion G protein-coupled receptor V1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-6369179-4	chr4	6369077	6369277	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001098227, intron 1 of 8)	intron (NM_001098227, intron 1 of 8)	3497.0	NM_001098227	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	3.31474565016018	3.54533632829659	2.78847300485725	3.5579492738306	3.6489382425981	3.80242790926833	3.06525631755444	3.17564307419313	0.195857928605919	0.730478075360709	0.998431161219273
Merged-chr19-11343294-4	chr19	11343185	11343385	+	955.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR78|LTR|ERV1	-7139.0	NM_027836	109225.0	Mm.491251	NM_027836	ENSMUSG00000024672	Ms4a7	9130422I10Rik|A430103C15Rik|CD20l4|CFFMA	membrane-spanning 4-domains, subfamily A, member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-21383687-4	chr5	21383591	21383791	+	903.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029195, intron 2 of 18)	intron (NM_029195, intron 2 of 18)	11018.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-134547086-2	chr5	134546986	134547186	+	548.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039162, intron 1 of 15)	RSINE1|SINE|B4	5348.0	NM_001039162	269713.0	Mm.255138	NM_009990	ENSMUSG00000063146	Clip2	B230327O20|CLIP-115|Clip1|Cyln2|WSCR4|mKIAA0291|wbscr4	CAP-GLY domain containing linker protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-22304735-1	chr10	22304635	22304835	+	913.0	f1_balb.idr	intron (NM_009018, intron 6 of 6)	L1M3|LINE|L1	-1985.0	NR_015465	606736.0	Mm.387042	NR_015465	ENSMUSG00000097352	C920009B18Rik	-	RIKEN cDNA C920009B18 gene	ncRNA	-1.17367364971587	-1.14665061133654	-1.15856004380685	-1.16834280623128	-1.17310571790619	-1.14406978763884	-0.42938571406771	-1.16659169643457	2.89727187181404	0.396361616615464	1
Merged-chr18-5680329-4	chr18	5680214	5680414	+	979.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360981, intron 2 of 8)	Lx9|LINE|L1	87667.0	NM_001360981	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-109340726-5	chr3	109340706	109340906	+	923.0285640000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_020505, exon 1 of 27)	5' UTR (NM_020505, exon 1 of 27)	123.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-86571882-4	chr9	86571751	86571951	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145969)	promoter-TSS (NM_001145969)	-9.0	NM_028352	109785.0	Mm.390201	NM_028352	ENSMUSG00000056131	Pgm3	2810473H05Rik|Agm1|BB187688|C77933|PAGM|Pgm-3	phosphoglucomutase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127675929-2	chr10	127675829	127676029	+	873.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-1136.0	NM_173732	210035.0	Mm.251075	NM_173732	ENSMUSG00000040195	Nemp1	Tmem194|Tmem194a	nuclear envelope integral membrane protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-43384936-1	chr6	43384836	43385036	+	574.0	f0_balb.idr	intron (NM_013861, intron 8 of 8)	intron (NM_013861, intron 8 of 8)	-57493.0	NR_045988	319812.0	Mm.446393	NR_045988		9430018G01Rik	-	RIKEN cDNA 9430018G01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-139375539-2	chr7	139375439	139375639	+	661.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-13570.0	NM_183144	212111.0	Mm.28308	NM_183144	ENSMUSG00000025477	Inpp5a	-	inositol polyphosphate-5-phosphatase A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-101848371-2	chr13	101848271	101848471	+	579.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-80154.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-41240471-2	chr8	41240386	41240586	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023662, intron 1 of 37)	intron (NM_023662, intron 1 of 37)	727.0	NM_023662	18536.0	Mm.117896	NM_023662	ENSMUSG00000031592	Pcm1	2600002H09Rik|9430077F19Rik|C030044G17Rik	pericentriolar material 1	protein-coding	2.30951100771102	1.43222299635814	1.39026454731218	1.849971160713	1.09468806222127	2.45397631444094	2.36742082400062	1.85982261066832	0.623184856137738	0.566316868070722	0.962236090886404
Merged-chr15-39943144-6	chr15	39943024	39943224	+	996.366699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172814, intron 1 of 6)	intron (NM_172814, intron 1 of 6)	870.0	NM_001347036	239393.0	Mm.39874	NM_172814	ENSMUSG00000022305	Lrp12	AI848829|C820005L12Rik|LRP-12	low density lipoprotein-related protein 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-83592116-3	chr9	83592047	83592247	+	743.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172507, intron 2 of 3)	intron (NM_172507, intron 2 of 3)	43809.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89244877-2	chr3	89244777	89244977	+	764.083374	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_121683, exon 1 of 11)	non-coding (NR_121683, exon 1 of 11)	136.0	NR_121683	360213.0	Mm.331156	NM_183037	ENSMUSG00000042766	Trim46	TRIFIC	tripartite motif-containing 46	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25385854-4	chr7	25385739	25385939	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_073028)	TTS (NR_073028)	4273.0	NM_001039507	16890.0	Mm.158548	NM_010719	ENSMUSG00000003123	Lipe	4933403G17Rik|HSL	lipase, hormone sensitive	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55661252-2	chr19	55661152	55661352	+	553.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045318, intron 2 of 3)	intron (NR_045318, intron 2 of 3)	40952.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-106411753-3	chr8	106411638	106411838	+	767.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3601.0	NM_011764	22751.0	Mm.295582	NM_011764	ENSMUSG00000031907	Zfp90	6430515L01Rik|KRAB17|NK10|Zfp64|Zfp83|mKIAA1954	zinc finger protein 90	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-99089212-2	chr9	99089112	99089312	+	927.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029094, intron 7 of 23)	B1_Mus2|SINE|Alu	50999.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33532290-2	chr16	33532190	33532390	+	655.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083902, intron 1 of 11)	intron (NM_001083902, intron 1 of 11)	13695.0	NM_001083902	171286.0	Mm.35253	NM_134251	ENSMUSG00000035506	Slc12a8	CCC9|E330020C02Rik	solute carrier family 12 (potassium/chloride transporters), member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-54383478-4	chr14	54383360	54383560	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011405, intron 4 of 11)	intron (NM_011405, intron 4 of 11)	22619.0	NM_026936	69089.0	Mm.182340	NM_026936	ENSMUSG00000000959	Oxa1l	1810020M02Rik|AI894287	oxidase assembly 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-57423609-4	chr16	57423524	57423724	+	915.2333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	70347.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-119112911-3	chr8	119112789	119112989	+	665.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019707, intron 7 of 13)	intron (NM_019707, intron 7 of 13)	-231649.0	NM_024219	68196.0	Mm.358714	NM_024219	ENSMUSG00000031839	Hsbp1	0610007A03Rik|AA408769|Hsp25	heat shock factor binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-144267751-3	chr5	144267628	144267828	+	926.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025833, intron 12 of 13)	intron (NM_025833, intron 12 of 13)	-9333.0	NR_040432	100504231.0	Mm.441035	NR_040432	ENSMUSG00000086894	Gm15708	-	predicted gene 15708	ncRNA	0.642005519084687	0.301858148148035	0.295842067494281	0.291210152287077	0.745416806393661	0.782375762335651	0.469202649464716	0.70374478681309	2.08857336506864	0.257484647302822	1
Merged-chr10-81503396-2	chr10	81503296	81503496	+	612.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010304, intron 6 of 6)	intron (NM_010304, intron 6 of 6)	-3259.0	NM_010102	13611.0	Mm.33065	NM_010102	ENSMUSG00000044199	S1pr4	Edg6|Lpc1|S1p4	sphingosine-1-phosphate receptor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-95942059-4	chr13	95941950	95942150	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR73|LTR|ERV1	-50128.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	1.47676333425183	1.14194313626064	2.94742204956971	1.07621279026479	2.17588662943355	1.69403244088543	3.15325759943051	1.92232001089921	0.907216413539499	0.410388995409137	0.894256659801134
Merged-chr9-61030229-2	chr9	61030129	61030329	+	786.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13160.0	NR_040767	330956.0	Mm.207985	NR_040767	ENSMUSG00000111290	Gm5122	A430102L10	predicted gene 5122	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75631367-2	chr11	75631267	75631467	+	749.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008916, intron 1 of 11)	intron (NM_008916, intron 1 of 11)	347.0	NM_008916	19062.0	Mm.1458	NM_008916	ENSMUSG00000006127	Inpp5k	C62|Pps|SKIP	inositol polyphosphate 5-phosphatase K	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-67565842-2	chr5	67565742	67565942	+	629.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42041.0	NM_001033415	330096.0	Mm.442747	NM_001033415	ENSMUSG00000050010	Shisa3	D830007B15Rik	shisa family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-121513589-2	chr8	121513511	121513711	+	556.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28343.0	NM_001357260	76405.0	Mm.165697	NM_029597	ENSMUSG00000031809	1700018B08Rik	1700084O22Rik	RIKEN cDNA 1700018B08 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-35994190-4	chr4	35994075	35994275	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166000, intron 7 of 8)	MERVL_2A-int|LTR|ERVL	-148971.0	NM_175516	242384.0	Mm.132507	NM_175516	ENSMUSG00000045083	Lingo2	B230217C06Rik|Lern3|Lrrn6c	leucine rich repeat and Ig domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3742630-4	chr4	3742549	3742749	+	837.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 3 of 12)	L1MB3|LINE|L1	27685.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-167341240-2	chr1	167341140	167341340	+	821.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1C|Other|Other	-8751.0	NM_019993	56752.0	Mm.292539	NM_019993	ENSMUSG00000026687	Aldh9a1	AA139417|Abaldh|ESTM40|TMABA-DH|Tmabadh	aldehyde dehydrogenase 9, subfamily A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-22051972-4	chr9	22051898	22052098	+	753.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010487)	promoter-TSS (NM_010487)	25.0	NM_010487	15571.0	Mm.390167	NM_010487	ENSMUSG00000003410	Elavl3	2600009P04Rik|Huc|PLE21|mHuC	ELAV like RNA binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-30611172-2	chr14	30611072	30611272	+	709.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310682)	promoter-TSS (NM_001310682)	-862.0	NM_001310682	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	0.496953722389019	1.01606988794868	0.358702258235613	0.352342798881071	0.501836365835978	0.899637253230163	0.360513661991069	1.12272942571782	0.929361739135462	0.596070938787478	1
Merged-chr19-44373159-4	chr19	44373054	44373254	+	908.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34555.0	NM_009127	20249.0	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81257996-4	chr10	81257828	81258028	+	842.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285853, intron 1 of 12)	intron (NM_001285853, intron 1 of 12)	629.0	NM_001285853	17179.0	Mm.2918	NM_010768	ENSMUSG00000004933	Matk	CHK|HYL|Ntk|p56ntk	megakaryocyte-associated tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-31940874-3	chr5	31940777	31940977	+	780.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144541, intron 7 of 11)	intron (NM_144541, intron 7 of 11)	-195595.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	1.14895033784066	1.33146433504188	0.617318012895636	0.803249533532173	1.16096052720439	1.67127600967921	0.620016669077212	0.609469226879667	0.403395519888971	0.793683517092675	0.998431161219273
Merged-chr1-120549508-2	chr1	120549408	120549608	+	675.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR41B|LTR|ERVL	-44484.0	NM_010766	17167.0	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	2.12648931090885	0.848995946398721	1.58806254492638	2.32467281765101	1.17610402232391	0.853547731189501	0.832986172647182	1.24137219082408	-2.80095509768182	0.0386638337574058	0.280238830500214
Merged-chr2-90539136-1	chr2	90539036	90539236	+	657.666687	f0_balb.idr	intron (NM_008982, intron 1 of 23)	L2a|LINE|L2	41511.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.957698320058764	1.99546471245712	1.7895399042493	2.25395236948511	1.77092521563445	1.04291097417656	2.50450003534147	0.99592262830615	-0.216996002006657	0.863161155457323	0.998431161219273
Merged-chr9-21546232-4	chr9	21546138	21546338	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021531)	promoter-TSS (NM_021531)	-656.0	NM_021531	59035.0	Mm.178115	NM_021531	ENSMUSG00000032185	Carm1	Prmt4	coactivator-associated arginine methyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-45608499-4	chr14	45608410	45608610	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176845, intron 8 of 12)	intron (NM_176845, intron 8 of 12)	49543.0	NR_039593	100628600.0		NR_039593	ENSMUSG00000093167	Mir5131	mmu-mir-5131|mu-mir-5131	microRNA 5131	ncRNA	4.3064399001373	4.10948014384762	4.77595393578257	4.1564299248914	2.93780702422361	3.75180135106169	3.32780427602671	3.74971998473697	-1.24182799418542	0.00892082835787328	0.100288022510509
Merged-chr4-40207284-2	chr4	40207184	40207384	+	660.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172689, intron 17 of 17)	intron (NM_172689, intron 17 of 17)	32541.0	NM_172689	230073.0	Mm.86382	NM_172689	ENSMUSG00000040296	Ddx58	6430573D20Rik|C330021E21|RIG-I|RLR-1	DEAD (Asp-Glu-Ala-Asp) box polypeptide 58	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-60417169-4	chr11	60417086	60417286	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145427)	promoter-TSS (NM_145427)	41.0	NM_025757	66771.0	Mm.29950	NM_025757	ENSMUSG00000018415	Gid4	4933439F18Rik	GID complex subunit 4, VID24 homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-58226488-3	chr9	58226374	58226574	+	857.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008884, intron 6 of 7)	intron (NM_008884, intron 6 of 7)	5324.0	NR_105806	102466639.0		NR_105806	ENSMUSG00000098886	Mir6385	Gm28021|mmu-mir-6385	microRNA 6385	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95662956-4	chr3	95662837	95663037	+	861.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008562, exon 3 of 3)	3' UTR (NM_008562, exon 3 of 3)	4216.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-105288732-4	chr14	105288641	105288841	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029561, intron 2 of 7)	intron (NM_029561, intron 2 of 7)	30068.0	NM_001190989	76273.0	Mm.290669	NM_029561	ENSMUSG00000053253	Ndfip2	0710001O20Rik|2810436B12Rik|9130207N19Rik|N4wbp5a|mKIAA1165	Nedd4 family interacting protein 2	protein-coding	5.63677953912659	6.40859512223942	5.89295772595005	6.13869957317547	5.36223802966578	5.52642875991129	6.05696352288205	6.16321053964526	-0.248858147401157	0.361492428782238	0.857264361680583
Merged-chr15-98807082-2	chr15	98806982	98807182	+	806.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_001013741, exon 2 of 2)	exon (NM_001013741, exon 2 of 2)	843.0	NM_001013741	13199.0	Mm.390810	NM_001013741	ENSMUSG00000059213	Ddn	Gm748	dendrin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-100298589-2	chr6	100298489	100298689	+	765.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11231.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95312602-2	chr3	95312502	95312702	+	690.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2588.0	NM_029789	76893.0	Mm.181009	NM_029789	ENSMUSG00000015714	Cers2	0610013I17Rik|AI225939|Lass2|TRH3	ceramide synthase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-76304879-1	chr13	76304779	76304979	+	662.0	f0_balb.idr	Intergenic	Intergenic	-80082.0	NM_030174	78771.0	Mm.316249	NM_030174	ENSMUSG00000021596	Mctp1	2810465F10Rik	multiple C2 domains, transmembrane 1	protein-coding	-0.852376258653067	-0.835156229788835	-0.840936328385064	-0.845184054518198	-0.851294952271611	0.375545671077789	-0.83973335743148	-0.844437489302235	3.74591567714168	0.190027406988851	1
Merged-chr6-128839660-4	chr6	128839555	128839755	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13340.0	NM_030599	80782.0	Mm.6180	NM_030599	ENSMUSG00000079298	Klrb1b	Klrb1d|Ly55b|Ly55d|NKR-P1B|NKR-P1D|Nkrp1-b|Nkrp1b|Nkrp1d|ly-55b|ly-55d	killer cell lectin-like receptor subfamily B member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-57437169-2	chr9	57437069	57437269	+	820.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_152146, intron 2 of 5)	B3A|SINE|B2	2567.0	NM_001357913	66812.0	Mm.250508	NM_176831	ENSMUSG00000063849	Ppcdc	1810057I13Rik|8430432M10Rik	phosphopantothenoylcysteine decarboxylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-22649777-3	chr9	22649679	22649879	+	714.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360259, intron 15 of 22)	intron (NM_001360259, intron 15 of 22)	174064.0	NM_181316	319845.0	Mm.176725	NM_178415	ENSMUSG00000035919	Bbs9	E130103I17Rik	Bardet-Biedl syndrome 9 (human)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-15799114-4	chr1	15799014	15799214	+	991.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6532.0	NM_009352	21749.0	Mm.4306	NM_009352	ENSMUSG00000025925	Terf1	Pin2|Trbf1|Trf1	telomeric repeat binding factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-88290104-4	chr1	88290026	88290226	+	777.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-12547.0	NM_198652	381280.0	Mm.384762	NM_198652	ENSMUSG00000044783	Hjurp	6430706D22Rik|A730008H23Rik|C330011F01Rik|Gm975|Mfleg1	Holliday junction recognition protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-59216888-4	chr12	59216796	59216996	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033156, intron 1 of 3)	intron (NM_001033156, intron 1 of 3)	2587.0	NM_001033156	70611.0	Mm.311026	NM_001033156	ENSMUSG00000035329	Fbxo33	5730501N20Rik|AI642135	F-box protein 33	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43372365-1	chr4	43372265	43372465	+	913.3333130000001	f0_balb.idr	intron (NM_177195, intron 27 of 28)	intron (NM_177195, intron 27 of 28)	-9617.0	NM_001037709	100213.0	Mm.235730	NM_199057	ENSMUSG00000035969	Rusc2	AI840675|mKIAA0375	RUN and SH3 domain containing 2	protein-coding	1.73365163117014	1.32113117705261	1.28472111042316	1.83105370615066	1.63912202870502	1.08348647288591	1.90264144491095	2.35438598704785	0.80572697642459	0.476659465724988	0.927980290875356
Merged-chr2-153157435-2	chr2	153157335	153157535	+	638.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-3866.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	-0.597777844133272	-0.257358364955218	-0.591576242934582	-0.441685136287825	-0.597205607609333	-0.250517649692254	-0.590904881466037	-0.439136425091432	0.0362272607868378	0.988617616351901	1
Merged-chr11-11558878-4	chr11	11558778	11558978	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	68960.0	NM_001305143	102631730.0	Mm.159430	NM_001305143	ENSMUSG00000062511	4930512M02Rik	-	RIKEN cDNA 4930512M02 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-82869633-2	chr18	82869533	82869733	+	557.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13736.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-33929802-6	chr6	33929720	33929920	+	810.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009148, intron 17 of 17)	intron (NM_009148, intron 17 of 17)	-99628.0	NM_028886	74354.0	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-38528003-4	chr13	38527924	38528124	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289599)	promoter-TSS (NM_001289599)	-110.0	NM_001289599	105245.0	Mm.28622	NM_145367	ENSMUSG00000038991	Txndc5	AL022641|ERp46|PC-TRP	thioredoxin domain containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16494048-2	chr7	16493948	16494148	+	762.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_172739)	TTS (NM_172739)	-17268.0	NM_008718	18142.0	Mm.145821	NM_008718	ENSMUSG00000001988	Npas1	MOP5|bHLHe11	neuronal PAS domain protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-25604243-2	chr14	25604143	25604343	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001309430, exon 1 of 1)	3' UTR (NM_001309430, exon 1 of 1)	730.0	NM_001309430	100188919.0	Mm.473810	NM_001309430		Gm45915	Israa	predicted gene, 45915	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-109062058-4	chr4	109061959	109062159	+	847.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001347169)	TTS (NM_001347169)	44404.0	NR_030432	791075.0		NR_030432	ENSMUSG00000076444	Mir761	Mirn761|mir-761|mmu-mir-761	microRNA 761	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-40629363-2	chr10	40629263	40629463	+	605.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001316719)	promoter-TSS (NM_001316719)	-648.0	NM_001316718	70503.0	Mm.252862	NM_027442	ENSMUSG00000063428	Ddo	5330420D20Rik|5730402C02Rik|AI467244	D-aspartate oxidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-73723023-2	chr15	73722923	73723123	+	641.166687	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166389)	promoter-TSS (NM_001166389)	-122.0	NM_001166390	19245.0	Mm.390807	NM_008975	ENSMUSG00000059895	Ptp4a3	AV088979|Prl-3|pPtp4a3	protein tyrosine phosphatase 4a3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-119478047-4	chr2	119478034	119478234	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026574)	promoter-TSS (NM_026574)	-505.0	NM_026574	68142.0	Mm.330496	NM_026574	ENSMUSG00000034154	Ino80	2310079N15Rik|4632409L19Rik|Inoc1	INO80 complex subunit	protein-coding	5.96939160377006	6.01097943275084	6.15092478579524	5.31847967359954	6.21098500213119	6.13544422108453	5.88313514231592	5.31196503578494	0.0361804814938672	0.895846963903315	0.998431161219273
Merged-chr12-55572352-4	chr12	55572250	55572450	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7145.0	NM_001277340	79459.0	Mm.392781	NM_001277340	ENSMUSG00000063129	Aldoart2	4933425L11Rik|Aldo1-ps1|Aldoa-ps1	aldolase 1 A, retrogene 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-86061402-2	chr11	86061302	86061502	+	644.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_178309, exon 20 of 20)	3' UTR (NM_178309, exon 20 of 20)	-37052.0	NR_046030	629393.0	Mm.372867	NR_046030		Gm20759	-	predicted gene, 20759	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27605992-2	chr2	27605892	27606092	+	664.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-71209.0	NM_011305	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-31044331-2	chr3	31044231	31044431	+	970.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_008857, intron 14 of 17)	intron (NM_008857, intron 14 of 17)	5365.0	NR_105975	102465610.0		NR_105975	ENSMUSG00000098890	Mir7008	Gm27752|mmu-mir-7008	microRNA 7008	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-150825449-2	chr2	150825349	150825549	+	621.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153781, intron 15 of 19)	ORR1A3|LTR|ERVL-MaLR	17121.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135272155-5	chr4	135272024	135272224	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013885, intron 1 of 5)	intron (NM_013885, intron 1 of 5)	636.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-149614174-2	chr4	149614074	149614274	+	716.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290989, intron 2 of 17)	intron (NM_001290989, intron 2 of 17)	27706.0	NM_023051	65945.0	Mm.38993	NM_023051	ENSMUSG00000039953	Clstn1	1810034E21Rik|Cst-1|Cstn1	calsyntenin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30955050-2	chr2	30954950	30955150	+	827.083313	f1_balb.idr|f1_c57bl6.idr	intron (NM_133673, intron 2 of 4)	intron (NM_133673, intron 2 of 4)	2049.0	NM_133673	30934.0	Mm.249164	NM_133673	ENSMUSG00000026848	Tor1b	2610016F05Rik|DQ1|torsinB	torsin family 1, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-127787322-4	chr3	127787272	127787472	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-2500.0	NM_145133	211550.0	Mm.31852	NM_145133	ENSMUSG00000046688	Tifa	T2bp	TRAF-interacting protein with forkhead-associated domain	protein-coding	3.9183861942307	2.88436848349695	3.19814809813333	4.27218455061287	4.2341161689679	4.01379565942695	4.41692471440337	4.62715090735633	0.882935185246335	0.0710312311597684	0.40136548420168
Merged-chr4-150882787-4	chr4	150882689	150882889	+	928.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A2-int|LTR|ERVL-MaLR	27132.0	NM_020569	57320.0	Mm.277349	NM_020569	ENSMUSG00000028964	Park7	DJ-1|Dj1	Parkinson disease (autosomal recessive, early onset) 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-95639584-2	chr9	95639484	95639684	+	624.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029620, intron 2 of 8)	intron (NM_029620, intron 2 of 8)	1956.0	NM_029620	76477.0	Mm.46016	NM_029620	ENSMUSG00000015354	Pcolce2	2400001O18Rik|Pcpe2	procollagen C-endopeptidase enhancer 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-138506836-3	chr1	138506740	138506940	+	910.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021605, intron 7 of 9)	intron (NM_021605, intron 7 of 9)	112917.0	NM_021605	59125.0	Mm.143817	NM_021605	ENSMUSG00000026393	Nek7	2810460C19Rik|AU020186	NIMA (never in mitosis gene a)-related expressed kinase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-56619162-2	chr6	56619062	56619262	+	545.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	85537.0	NM_025520	66373.0	Mm.25642	NM_025520	ENSMUSG00000091625	Lsm5	2010208O10Rik|2310034K10Rik	LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-45944895-1	chr9	45944795	45944995	+	556.0	f0_balb.idr	intron (NM_001359653, intron 16 of 26)	intron (NM_001359653, intron 16 of 26)	-5305.0	NR_106055	102465659.0		NR_106055	ENSMUSG00000098327	Mir7087	Gm27273|mmu-mir-7087	microRNA 7087	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-55827536-2	chr12	55827436	55827636	+	743.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur2|LINE|L1	-6020.0	NM_001286263	56784.0	Mm.292180	NM_019994	ENSMUSG00000021027	Ralgapa1	2310003F20Rik|4930400K19Rik|AI563624|GRIPE|Garnl1|Tulip1|mKIAA0884	Ral GTPase activating protein, alpha subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120949016-4	chr11	120948918	120949118	+	896.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001038654)	promoter-TSS (NM_001038654)	-49.0	NM_001038653	80879.0	Mm.28632	NM_030696	ENSMUSG00000025161	Slc16a3	Mct3|Mct4	solute carrier family 16 (monocarboxylic acid transporters), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167771764-4	chr2	167771666	167771866	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	80589.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-26154127-2	chr2	26154027	26154227	+	655.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13621.0	NM_001256521	109299.0	Mm.389259	NM_001256521		Tmem250-ps	AI551216|C330006A16Rik	transmembrane protein 250, pseudogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105851962-4	chr8	105851810	105852010	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177150)	promoter-TSS (NM_177150)	98.0	NM_177150	320394.0	Mm.334775	NM_177150	ENSMUSG00000036672	Cenpt	G630055P03Rik	centromere protein T	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-82910941-3	chr18	82910844	82911044	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183033)	promoter-TSS (NM_183033)	65.0	NM_183033	329003.0	Mm.326526	NM_183033	ENSMUSG00000058881	Zfp516	C330029B10Rik|D230016L03|Zfp26l|Znf516|mKIAA0222	zinc finger protein 516	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-57302757-2	chr17	57302657	57302857	+	735.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163816, intron 13 of 25)	intron (NM_001163816, intron 13 of 25)	23657.0	NM_001163815	22324.0	Mm.248172	NM_011691	ENSMUSG00000034116	Vav1	Vav|vav-T	vav 1 oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-82866672-4	chr11	82866566	82866766	+	947.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164569, intron 1 of 7)	intron (NM_001164569, intron 1 of 7)	4078.0	NM_001164570	67338.0	Mm.341608	NM_026097	ENSMUSG00000020696	Rffl	1700051E09Rik|4930516L10Rik|BG080975|Carp2	ring finger and FYVE like domain containing protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-9165521-2	chr13	9165421	9165621	+	543.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172585, intron 14 of 17)	Tigger7|DNA|TcMar-Tigger	71640.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141022293-4	chr7	141022205	141022405	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-5413.0	NM_001033632	213002.0	Mm.276440	NM_001033632	ENSMUSG00000059108	Ifitm6	A330075D07|Dspa2f|Fgls5|fragilis5	interferon induced transmembrane protein 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-5802400-4	chr13	5802264	5802464	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55728.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-22759799-4	chr14	22759681	22759881	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028275, intron 5 of 6)	intron (NM_028275, intron 5 of 6)	-216983.0	NR_046307	74896.0	Mm.444661	NR_046307	ENSMUSG00000114412	4930405A10Rik	4930456G20Rik	RIKEN cDNA 4930405A10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-20025714-3	chr3	20025606	20025806	+	812.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080634, intron 5 of 16)	intron (NM_080634, intron 5 of 16)	9604.0	NM_001146324	12807.0	Mm.291533	NM_080634	ENSMUSG00000027615	Hps3	coa	HPS3, biogenesis of lysosomal organelles complex 2 subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-87406422-2	chr17	87406322	87406522	+	654.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_029298, intron 5 of 6)	MTC|LTR|ERVL-MaLR	21319.0	NM_029298	75467.0	Mm.50108	NM_029298	ENSMUSG00000036557	Stpg4	1700011E24Rik|GSE	sperm tail PG rich repeat containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46002454-4	chr19	46002356	46002556	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152221, intron 1 of 1)	ORR1C2|LTR|ERVL-MaLR	-1022.0	NM_176785	20170.0	Mm.101110	NM_176785	ENSMUSG00000074811	Hps6	5330434M19Rik|BLOC2|ru	HPS6, biogenesis of lysosomal organelles complex 2 subunit 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-73324703-5	chr12	73324616	73324816	+	887.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037717, intron 5 of 15)	intron (NM_001037717, intron 5 of 15)	37868.0	NM_001037717	625098.0	Mm.32075	NM_001037717	ENSMUSG00000044712	Slc38a6	AW322671|EG625098	solute carrier family 38, member 6	protein-coding	-1.50578006401468	-1.47341050667617	-1.17515363242603	-1.49124015727368	-1.50350778094084	-1.47128922826211	-1.3269605056278	-1.48980085267657	-0.800720836253042	0.817773358996722	1
Merged-chr9-106429874-1	chr9	106429774	106429974	+	998.0	f0_balb.idr	5' UTR (NM_001324534, exon 1 of 3)	5' UTR (NM_001324534, exon 1 of 3)	463.0	NM_009082	19944.0	Mm.288696	NM_009082	ENSMUSG00000048758	Rpl29	Rpl43	ribosomal protein L29	protein-coding	4.14329574089678	3.98045889240429	4.23919256643897	2.17323843184742	3.70476871363104	3.32138301216091	4.11738640513944	2.186955187531	-0.485689310183234	0.462603633057147	0.921194606787634
Merged-chr9-107579561-4	chr9	107579443	107579643	+	884.508301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008317, exon 4 of 4)	3' UTR (NM_008317, exon 4 of 4)	-1126.0	NM_019750	56441.0	Mm.10305	NM_019750	ENSMUSG00000079334	Nat6	AI225910|Fus2	N-acetyltransferase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-89904773-4	chr13	89904704	89904904	+	766.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028012, intron 7 of 7)	intron (NM_028012, intron 7 of 7)	-162292.0	NM_001134475	13003.0	Mm.158700	NM_019389	ENSMUSG00000021614	Vcan	5430420N07Rik|9430051N09|Cspg2|DPEAAE|NG2|PG-M|PG-M(V0)|PG-M(V1)|hdf	versican	protein-coding	1.76523467156732	1.29034673544801	2.01133782258287	1.39462633767125	1.34410405531107	1.48300618927653	1.71707250135408	1.54129715144668	-0.444094520951335	0.68630531905239	0.996533206832645
Merged-chr10-99303097-3	chr10	99303000	99303200	+	653.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	39869.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152556844-4	chr1	152556739	152556939	+	984.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 5 of 17)	intron (NM_016846, intron 5 of 17)	68378.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-62182618-3	chr10	62182500	62182700	+	904.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11627.0	NR_106122	102465767.0		NR_106122	ENSMUSG00000099185	Mir7662	Gm27876|mmu-mir-7662	microRNA 7662	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-48131779-4	chr14	48131663	48131863	+	886.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033602, intron 1 of 5)	intron (NM_033602, intron 1 of 5)	10894.0	NM_033602	93834.0	Mm.296457	NM_033602	ENSMUSG00000021846	Peli2	AW047589|BB129927	pellino 2	protein-coding	0.896916174934272	1.65485852388836	2.19780723520337	0.931955381157113	1.60455217566486	1.96806513842228	2.53878902379643	0.935522365603669	0.917853608900167	0.473726857012225	0.926125823511231
Merged-chr4-46550179-3	chr4	46550084	46550284	+	792.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164804, intron 3 of 11)	intron (NM_001164804, intron 3 of 11)	-14043.0	NM_029077	74735.0	Mm.240252	NM_029077	ENSMUSG00000039853	Trim14	5830400N10Rik|pub	tripartite motif-containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-105291995-4	chr13	105291886	105292086	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360891, intron 1 of 7)	MMVL30-int|LTR|ERV1	1028.0	NM_027934	71816.0	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-119948386-2	chr6	119948286	119948486	+	649.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001199083, exon 19 of 28)	exon (NM_001199083, exon 19 of 28)	45688.0	NM_001166383	19365.0	Mm.149	NM_011236	ENSMUSG00000030166	Rad52	Rad52yh	RAD52 homolog, DNA repair protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-86232037-2	chr17	86231937	86232137	+	584.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011104, intron 1 of 14)	intron (NM_011104, intron 1 of 14)	55141.0	NR_045435	72104.0	Mm.443401	NR_045435	ENSMUSG00000100738	2010106C02Rik	-	RIKEN cDNA 2010106C02 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-17686785-3	chr16	17686706	17686906	+	898.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358404, intron 2 of 16)	intron (NM_001358404, intron 2 of 16)	36094.0	NM_001285886	94112.0	Mm.208970	NM_033609	ENSMUSG00000012114	Med15	A230074L19Rik|AW536074|Pcqap|mPcqap	mediator complex subunit 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-62013694-3	chr11	62013597	62013797	+	710.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310526, intron 1 of 7)	intron (NM_001310526, intron 1 of 7)	56934.0	NM_001310526	432572.0	Mm.438022	NM_001029936	ENSMUSG00000042331	Specc1	2810012G08Rik|B230396K10Rik|Cytsb	sperm antigen with calponin homology and coiled-coil domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-51578594-3	chr11	51578503	51578703	+	667.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153393, intron 27 of 28)	intron (NM_153393, intron 27 of 28)	-6154.0	NM_028398	72947.0	Mm.256875	NM_028398	ENSMUSG00000020359	Phykpl	2900006B13Rik|Agxt2l2	5-phosphohydroxy-L-lysine phospholyase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30474277-4	chr2	30474179	30474379	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030244)	promoter-TSS (NM_030244)	-80.0	NM_030244	72500.0	Mm.295464	NM_030244	ENSMUSG00000089762	Ier5l	2610524G09Rik	immediate early response 5-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-33660748-4	chr8	33660635	33660835	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010344, intron 1 of 12)	intron (NM_010344, intron 1 of 12)	7497.0	NM_010344	14782.0	Mm.283573	NM_010344	ENSMUSG00000031584	Gsr	AI325518|D8Ertd238e|Gr-1|Gr1	glutathione reductase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46041416-2	chr19	46041329	46041529	+	725.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113408, intron 1 of 10)	ID_B1|SINE|B4	-1808.0	NM_010697	16825.0	Mm.327442	NM_010697	ENSMUSG00000025223	Ldb1	CLIM2|NLI	LIM domain binding 1	protein-coding	1.16122688126813	0.352180675561758	0.341819912863076	0.333708116491218	0.322057604774751	0.354493310117458	1.42281960193256	0.970959015707868	1.12823689735719	0.556049754060993	1
Merged-chr3-38221828-2	chr3	38221728	38221928	+	547.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13709.0	NR_040541	71342.0	Mm.410782	NR_040541	ENSMUSG00000106002	5430434I15Rik	-	RIKEN cDNA 5430434I15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-34158405-4	chr8	34158310	34158510	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026432, intron 1 of 5)	intron (NM_026432, intron 1 of 5)	3847.0	NM_026432	67887.0	Mm.290353	NM_026432	ENSMUSG00000031532	Saraf	1810045K07Rik|Tmem66	store-operated calcium entry-associated regulatory factor	protein-coding	5.00099252738852	4.59403258210202	5.23823355527643	4.43198266175072	5.36188670682353	4.93390468859838	4.73776782292508	5.19524865809535	0.273199464928163	0.422996582743314	0.900322118218157
Merged-chr6-72397025-2	chr6	72396925	72397125	+	636.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6358.0	NM_016794	22320.0	Mm.1838	NM_016794	ENSMUSG00000050732	Vamp8	AU041171|Edb|endobrevin	vesicle-associated membrane protein 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-112927029-3	chr10	112926880	112927080	+	738.355591	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001033474, exon 1 of 1)	3' UTR (NM_001033474, exon 1 of 1)	2046.0	NM_001033474	382423.0	Mm.431239	NM_001033474	ENSMUSG00000074748	Atxn7l3b	4921506J03Rik|6230409E21Rik|AI315132	ataxin 7-like 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-89276748-1	chr4	89276648	89276848	+	546.5	f1_c57bl6.idr	exon (NM_009877, exon 2 of 3)	exon (NM_009877, exon 2 of 3)	5444.0	NM_001040654	12578.0	Mm.4733	NM_009877	ENSMUSG00000044303	Cdkn2a	ARF-INK4a|Arf|INK4a-ARF|Ink4a/Arf|MTS1|Pctr1|p16|p16(INK4a)|p16INK4a|p19<ARF>|p19ARF	cyclin dependent kinase inhibitor 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111150082-2	chr12	111149982	111150182	+	661.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16288.0	NM_001286122	22031.0	Mm.27431	NM_011632	ENSMUSG00000021277	Traf3	AI528849|CAP-1|CD40bp|CRAF1|LAP1|T-BAM|amn	TNF receptor-associated factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35785029-1	chr17	35784929	35785129	+	545.0	f1_c57bl6.idr	Intergenic	Intergenic	12579.0	NR_045459	74601.0	Mm.410840	NR_045459	ENSMUSG00000092171	4833427F10Rik	-	RIKEN cDNA 4833427F10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27028048-4	chr2	27027931	27028131	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172659)	promoter-TSS (NM_172659)	-33.0	NM_001177627	227659.0	Mm.41203	NM_172659	ENSMUSG00000036067	Slc2a6	A330096C23|F630103L12Rik|Glut6|Glut9	solute carrier family 2 (facilitated glucose transporter), member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-145253757-1	chr7	145253657	145253857	+	561.666687	f1_c57bl6.idr	TTS (NR_132642)	TTS (NR_132642)	30254.0	NR_132644	233979.0	Mm.102235	NM_146206	ENSMUSG00000048677	Tpcn2	D830047E22Rik|Gm35086	two pore segment channel 2	protein-coding	2.20820768316513	3.45362778422092	1.56322087055856	2.64177350106627	2.60410162643764	2.06626433465883	1.29691784372519	2.0863510921856	-1.14854809661875	0.224518235435695	0.716302896348785
Merged-chr4-132379037-2	chr4	132378937	132379137	+	673.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161797, intron 3 of 12)	intron (NM_001161797, intron 3 of 12)	-25351.0	NR_003270	399101.0	Mm.486919	NR_002904	ENSMUSG00000085241	Snhg3	Rnu17d|U17HG	small nucleolar RNA host gene 3	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-38371868-4	chr15	38371779	38371979	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-71168.0	NM_001289471	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133774961-7	chr4	133774978	133775178	+	999.888916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21467.0	NM_001080819	93760.0	Mm.22478	NM_001080819	ENSMUSG00000007880	Arid1a	1110030E03Rik|BAF250a|Osa1|Smarcf1	AT rich interactive domain 1A (SWI-like)	protein-coding	4.22543846747615	4.64840421872991	3.58230911415446	4.07308930727924	4.16583041176569	4.93773859090481	4.53835834756807	3.49479775371692	0.253653290562848	0.585031780603853	0.967268722441911
Merged-chr11-60218980-2	chr11	60218880	60219080	+	897.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358315, intron 1 of 18)	MIR|SINE|MIR	1647.0	NM_011480	20787.0	Mm.278701	NM_011480	ENSMUSG00000020538	Srebf1	ADD1|SREBP1|bHLHd1	sterol regulatory element binding transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-113648358-4	chr11	113648224	113648424	+	950.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1205.0	NM_013581	16834.0	Mm.261620	NM_013581	ENSMUSG00000018661	Cog1	6030445I15|Ldlb|mKIAA1381	component of oligomeric golgi complex 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-30898323-2	chr5	30898223	30898423	+	802.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001048192, intron 12 of 16)	intron (NM_001048192, intron 12 of 16)	8989.0	NM_001294262	231093.0	Mm.440364	NM_174849	ENSMUSG00000029165	Agbl5	9430057O19Rik|CCP5	ATP/GTP binding protein-like 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-19712479-3	chr4	19712394	19712594	+	945.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER20|DNA|hAT-Charlie	-3490.0	NR_074090	107568.0	Mm.78312	NM_177327	ENSMUSG00000041058	Wwp1	8030445B08Rik|AIP5|SDRP1|Tiul1	WW domain containing E3 ubiquitin protein ligase 1	protein-coding	1.93613947664673	1.60770577899193	1.11368181845557	1.81338478568798	2.13538067852433	2.58644512770461	2.0129112043159	1.09725354656509	1.11066547814379	0.320313330970208	0.822777175850409
Merged-chr9-44094913-4	chr9	44094808	44095008	+	895.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_016808, exon 13 of 13)	3' UTR (NM_016808, exon 13 of 13)	-6862.0	NM_001190314	259172.0	Mm.227110	NM_147126	ENSMUSG00000034739	Mfrp	rd6	membrane frizzled-related protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-183936453-2	chr1	183936342	183936542	+	742.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	97556.0	NM_028516	73363.0	Mm.50115	NM_028516	ENSMUSG00000044854	1700056E22Rik	-	RIKEN cDNA 1700056E22 gene	protein-coding	1.21628117105158	1.87148896792443	1.9305220583116	1.27027370936722	1.67192205163851	2.43013657036416	1.068577110525	2.09111829663245	0.859356995520455	0.445945976931488	0.913463435788299
Merged-chr9-102834888-4	chr9	102834805	102835005	+	996.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013649)	promoter-TSS (NM_013649)	-15.0	NM_013649	20187.0	Mm.335391	NM_013649	ENSMUSG00000032547	Ryk	AW536699|ERK-3|Vik	receptor-like tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122180025-2	chr5	122179925	122180125	+	622.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21746.0	NM_013636	19047.0	Mm.280784	NM_013636	ENSMUSG00000004455	Ppp1cc	PP-1G|PP1|dis2m1	protein phosphatase 1, catalytic subunit, gamma isoform	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-6415773-4	chr11	6415681	6415881	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008907)	promoter-TSS (NM_008907)	-89.0	NM_008907	268373.0	Mm.5246	NM_008907	ENSMUSG00000071866	Ppia	2700098C05|Cphn|CyP-18|CypA	peptidylprolyl isomerase A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-37272211-3	chr17	37272135	37272335	+	731.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_013819, intron 3 of 7)	intron (NM_013819, intron 3 of 7)	2001.0	NM_013819	14991.0	Mm.14437	NM_013819	ENSMUSG00000016206	H2-M3	H-2M3|Hmt|M3a|MuprM3|MuprM301|MuprM302|R4B2	histocompatibility 2, M region locus 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-86472447-2	chr1	86472347	86472547	+	847.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46118.0	NM_027966	71863.0	Mm.179627	NM_027966	ENSMUSG00000036574	Tex44	1700019O17Rik	testis expressed 44	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134862990-4	chr6	134862876	134863076	+	835.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	24809.0	NR_074084	14760.0	Mm.4787	NM_008157	ENSMUSG00000032641	Gpr19	-	G protein-coupled receptor 19	protein-coding	1.16971877379304	0.683119512080944	1.39690143097677	1.24491274997861	1.07412215237752	1.35626402276634	0.674736575619197	0.665433897077271	-0.763699494291276	0.61614843607912	0.977352076822579
Merged-chr10-78105665-4	chr10	78105570	78105770	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB3|LINE|L1	36302.0	NM_015790	50723.0	Mm.17819	NM_015790	ENSMUSG00000000732	Icosl	AU044799|B7-H2|B7RP-1|B7h|BG071784|GI50|GL50|GL50-B|ICOS-L|Icoslg|LICOS|Ly115l|mKIAA0653	icos ligand	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-81327211-2	chr7	81327111	81327311	+	941.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008803, intron 19 of 21)	intron (NM_008803, intron 19 of 21)	18023.0	NM_009092	20068.0	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-8751596-2	chr19	8751496	8751696	+	632.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_019829, intron 9 of 9)	ID4|SINE|ID	5373.0	NR_132423	102640359.0	Mm.440831	NR_132423		1700023D09Rik	AV208457	RIKEN cDNA 1700023D09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6663585-3	chr19	6663489	6663689	+	852.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-120519.0	NM_009203	20521.0	Mm.391146	NM_009203	ENSMUSG00000061742	Slc22a12	AI987855|OAT4L|Rst|Slc22al2|URAT1	solute carrier family 22 (organic anion/cation transporter), member 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25787771-2	chr7	25787671	25787871	+	982.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009465, intron 1 of 19)	intron (NM_009465, intron 1 of 19)	962.0	NM_001190974	26362.0	Mm.4128	NM_009465	ENSMUSG00000002602	Axl	AI323647|Ark|Tyro7|Ufo	AXL receptor tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10698513-3	chr19	10698412	10698612	+	773.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361958, intron 1 of 4)	intron (NM_001361958, intron 1 of 4)	-2256.0	NM_001361964	107305.0	Mm.19091	NM_181403	ENSMUSG00000048832	Vps37c	5730409F24Rik|AU042646	vacuolar protein sorting 37C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6356256-2	chr19	6356156	6356356	+	584.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001291787)	TTS (NM_001291787)	-7434.0	NM_011750	22668.0	Mm.256422	NM_011750	ENSMUSG00000024949	Sf1	BBP|MZFM|WBP4|Zfp162	splicing factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-16574676-4	chr16	16574560	16574760	+	981.966675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301817, intron 1 of 16)	intron (NM_001301817, intron 1 of 16)	-14441.0	NM_139232	224014.0	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45481541-3	chr7	45481439	45481639	+	741.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027903, intron 4 of 6)	intron (NM_027903, intron 4 of 6)	-4723.0	NM_001290996	56734.0	Mm.439742	NM_008807	ENSMUSG00000023467	Tulp2	Pdet	tubby-like protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132800210-5	chr4	132800144	132800344	+	691.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-3880.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-42341435-2	chr6	42341335	42341535	+	653.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-8393.0	NM_001289619	22793.0	Mm.282303	NM_011777	ENSMUSG00000029860	Zyx	9530098H06Rik|R75157	zyxin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-91387980-3	chr13	91387882	91388082	+	859.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045161, exon 1 of 3)	non-coding (NR_045161, exon 1 of 3)	103.0	NR_045161	320297.0	Mm.375866	NR_045161	ENSMUSG00000097182	A830009L08Rik	-	RIKEN cDNA A830009L08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-119981820-8	chr9	119981692	119981892	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153287, intron 1 of 4)	intron (NM_153287, intron 1 of 4)	1231.0	NM_001357560	215418.0	Mm.491094	NM_153287	ENSMUSG00000032515	Csrnp1	4931429D10Rik|Axud1|CSRNP-1|URAX1|taip-3	cysteine-serine-rich nuclear protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-106437876-4	chr9	106437765	106437965	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025371, intron 1 of 14)	MIRb|SINE|MIR	371.0	NM_001276442	109652.0	Mm.7165	NM_025371	ENSMUSG00000023262	Acy1	1110014J22Rik|Acy-1	aminoacylase 1	protein-coding	1.51007710464216	1.07331993994514	1.17386215899657	1.44928037939961	1.08022834278987	0.689582872419467	0.678699917332333	0.669332139863005	-2.70986835596299	0.0822062560243063	0.438620216326546
Merged-chr13-3610612-2	chr13	3610512	3610712	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360838, intron 1 of 19)	CpG	496.0	NM_134063	105203.0	Mm.221609	NM_134063	ENSMUSG00000033799	Fam208b	AI645998|Pap20|mKIAA2006	family with sequence similarity 208, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25755097-8	chr7	25755004	25755204	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360789)	promoter-TSS (NM_001360789)	-345.0	NM_178089	232989.0	Mm.254223	NM_144922	ENSMUSG00000040725	Hnrnpul1	E130317O14Rik|E1B-AP5|E1BAP5|Hnrnpul|Hnrpul1	heterogeneous nuclear ribonucleoprotein U-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34125349-2	chr17	34125246	34125446	+	608.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360530)	promoter-TSS (NM_001360530)	-172.0	NM_001360530	14998.0	Mm.16373	NM_010386	ENSMUSG00000037649	H2-DMa	H-2Ma|H2-Ma	histocompatibility 2, class II, locus DMa	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-163951924-4	chr2	163951807	163952007	+	930.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33224.0	NM_183023	241770.0	Mm.330760	NM_183023	ENSMUSG00000035226	Rims4	6530406L02|Rim4	regulating synaptic membrane exocytosis 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97432115-4	chr11	97431947	97432147	+	847.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18113.0	NM_021493	58996.0	Mm.394118	NM_021493	ENSMUSG00000049807	Arhgap23	A330041B18Rik	Rho GTPase activating protein 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-54860856-2	chr18	54860756	54860956	+	710.1999509999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	129324.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-63745302-4	chr4	63745215	63745415	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177371)	promoter-TSS (NM_177371)	-202.0	NM_177371	326623.0	Mm.208152	NM_177371	ENSMUSG00000050395	Tnfsf15	Tl1|Tl1a|Tnlg1b|Vegi	tumor necrosis factor (ligand) superfamily, member 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91139149-2	chr2	91139049	91139249	+	626.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177719, intron 33 of 34)	intron (NM_001177719, intron 33 of 34)	21005.0	NM_008653	17868.0	Mm.10728	NM_008653	ENSMUSG00000002100	Mybpc3	-	myosin binding protein C, cardiac	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30806921-2	chr2	30806821	30807021	+	583.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1047.0	NM_001356435	66617.0	Mm.33167	NM_170592	ENSMUSG00000026857	Ntmt1	2610205E22Rik|AL033331|AL033332|Mettl11a|NTM1A	N-terminal Xaa-Pro-Lys N-methyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-58945939-2	chr17	58945839	58946039	+	622.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027001, intron 6 of 12)	L1_Mus4|LINE|L1	45436.0	NM_027001	69239.0	Mm.246732	NM_027001	ENSMUSG00000024227	Pdzph1	2610034M16Rik|AV114557	PDZ and pleckstrin homology domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120576283-2	chr11	120576183	120576383	+	597.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_133796)	TTS (NM_133796)	-3030.0	NM_011032	18453.0	Mm.16660	NM_011032	ENSMUSG00000025130	P4hb	ERp59|PDI|Pdia1|Thbp	prolyl 4-hydroxylase, beta polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-27541654-2	chr7	27541554	27541754	+	765.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001317355, intron 6 of 13)	intron (NM_001317355, intron 6 of 13)	11564.0	NM_011116	18807.0	Mm.6483	NM_011116	ENSMUSG00000003363	Pld3	Sam-9	phospholipase D family, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-49107332-4	chr6	49107226	49107426	+	977.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023670, intron 8 of 14)	intron (NM_023670, intron 8 of 14)	33531.0	NM_029353	75593.0	Mm.439947	NM_029353	ENSMUSG00000029815	Malsu1	2410003K15Rik|Matsu1	mitochondrial assembly of ribosomal large subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-82901622-4	chr10	82901528	82901728	+	961.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35002.0	NM_025499	66341.0	Mm.443284	NM_025499	ENSMUSG00000109864	Eid3	1700027M21Rik|NS4EB	EP300 interacting inhibitor of differentiation 3	protein-coding	2.43973783338817	3.6425105548272	1.48888395768484	2.80664311572351	3.09060779356317	3.21737240158153	1.78919044360118	3.44471295028521	0.3482129592668	0.677539016291912	0.994818437932722
Merged-chr19-5880872-2	chr19	5880772	5880972	+	709.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134154, intron 4 of 5)	intron (NM_134154, intron 4 of 5)	3050.0	NM_001361974	107375.0	Mm.5323	NM_134154	ENSMUSG00000024818	Slc25a45	AW491445	solute carrier family 25, member 45	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-69158202-1	chr3	69158102	69158302	+	944.0	f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	26969.0	NR_126533	381452.0	Mm.331067	NM_001243000	ENSMUSG00000094763	Gm1647	-	predicted gene 1647	ncRNA	2.16774488152663	2.589883838836	1.34853999619014	2.63951207098837	2.91716520790151	2.61018617654579	1.35865080087492	3.5661517506017	1.08020528874394	0.248799949725462	0.74758343357745
Merged-chr7-46831447-4	chr7	46831368	46831568	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14336.0	NM_010699	16828.0	Mm.29324	NM_010699	ENSMUSG00000063229	Ldha	Ldh1|Ldhm|l7R2	lactate dehydrogenase A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-54046677-2	chr19	54046577	54046777	+	713.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_007417, exon 1 of 1)	exon (NM_007417, exon 1 of 1)	1495.0	NM_007417	11551.0	Mm.235195	NM_007417	ENSMUSG00000033717	Adra2a	AW122659|Adra-2|Adra-2a|alpha(2A)AR|alpha2-C10|alpha2A|alpha2A-AR	adrenergic receptor, alpha 2a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-96637367-4	chr9	96637275	96637475	+	996.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5872.0	NM_053268	114713.0	Mm.124502	NM_053268	ENSMUSG00000032413	Rasa2	5430433H21Rik|AA517451|AU023900|GAP1m	RAS p21 protein activator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-16363910-3	chr9	16363798	16363998	+	780.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080814, intron 1 of 24)	intron (NM_001080814, intron 1 of 24)	14333.0	NM_001080814	270120.0	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT atypical cadherin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-58549089-4	chr9	58548988	58549188	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8148.0	NM_133983	102657.0	Mm.5356	NM_133983	ENSMUSG00000035914	Cd276	6030411F23Rik|AU016588|B7RP-2|B7h3	CD276 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-24651868-4	chr12	24651756	24651956	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178357, intron 1 of 3)	CpG	485.0	NM_178357	194655.0	Mm.9616	NM_178357	ENSMUSG00000020653	Klf11	9830142A17|D12Ertd427e|Tieg2|Tieg2b|Tieg3	Kruppel-like factor 11	protein-coding	7.46356930169662	7.62800155136616	7.65288390759998	7.52853144326279	7.66701356030346	7.82538172988602	7.75404081410056	7.55448619544789	0.138655955404347	0.317057003505788	0.820351486757242
Merged-chr18-20789636-3	chr18	20789524	20789724	+	840.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43220.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-163858705-3	chr2	163858608	163858808	+	759.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001030292, exon 2 of 2)	exon (NM_001030292, exon 2 of 2)	4958.0	NM_001030292	241769.0	Mm.295337	NM_001030292	ENSMUSG00000035238	Kcnk15	KCNK11|KCNK14|KT3.3|TASK5	potassium channel, subfamily K, member 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-22303812-1	chr10	22303712	22303912	+	751.0	f1_balb.idr	intron (NM_009018, intron 6 of 6)	intron (NM_009018, intron 6 of 6)	-2908.0	NR_015465	606736.0	Mm.387042	NR_015465	ENSMUSG00000097352	C920009B18Rik	-	RIKEN cDNA C920009B18 gene	ncRNA	0.794827194798117	0.872272210577513	0.848053461484753	0.828640855794547	1.84424734966953	2.11573048448939	2.45437945418593	1.85234079498114	5.50705275844041	7.53791805192482e-05	0.00247103663352442
Merged-chr14-25479067-2	chr14	25478967	25479167	+	733.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	19882.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-75911876-2	chr15	75911776	75911976	+	975.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_178646, exon 1 of 1)	3' UTR (NM_178646, exon 1 of 1)	2141.0	NM_178646	105734.0	Mm.275583	NM_178646	ENSMUSG00000103906	Tigd5	AA409802|AA409995|AI666797	tigger transposable element derived 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115670736-3	chr11	115670641	115670841	+	612.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001313936, intron 2 of 5)	intron (NM_001313936, intron 2 of 5)	28793.0	NM_001313937	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-48512976-2	chr13	48512876	48513076	+	778.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164575, intron 1 of 4)	intron (NM_001164575, intron 1 of 4)	434.0	NM_001164575	67911.0	Mm.251375	NM_026450	ENSMUSG00000050954	Zfp169	1700025J14Rik|4930429A13Rik|BE688704	zinc finger protein 169	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-121078199-6	chr11	121078110	121078310	+	723.388916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145373, intron 1 of 5)	RLTR15|LTR|ERVK	2929.0	NM_145373	209588.0	Mm.69553	NM_145373	ENSMUSG00000025165	Sectm1a	BC010462	secreted and transmembrane 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101537766-4	chr7	101537652	101537852	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18050.0	NM_007490	11871.0	Mm.439746	NM_007490	ENSMUSG00000092517	Art2a-ps	ARTC2|Art2a|Ly92a|Rt-6|Rt6|Rt6-1	ADP-ribosyltransferase 2a, pseudogene	protein-coding	3.17770378839677	2.11771356855945	2.8614717288305	2.77991919883698	2.65768561923857	1.42469945723075	1.65494726326484	2.15131017087147	-1.50554001999297	0.0878190981341335	0.455601126872298
Merged-chr2-25272444-4	chr2	25272342	25272542	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023464)	promoter-TSS (NM_023464)	-24.0	NM_023464	68475.0	Mm.21444	NM_023464	ENSMUSG00000026966	Ssna1	1110003H09Rik|1190004J23Rik|AA934184|N14|NA14	SS nuclear autoantigen 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5458399-2	chr17	5458299	5458499	+	560.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18139.0	NM_027457	70544.0	Mm.46654	NM_027457	ENSMUSG00000004945	Tmem242	1110008A10Rik|2310046K16Rik|5730437N04Rik	transmembrane protein 242	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-101947342-2	chr5	101947264	101947464	+	730.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 10 of 66)	intron (NM_172882, intron 10 of 66)	122557.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0.686087158164972	0.527326223627098	0.332541941273061	0.327534331594891	0.463129870875969	0.829182608937747	0.50999110170345	0.950370835899669	1.50428887424951	0.381120681164297	1
Merged-chr14-118675291-2	chr14	118675191	118675391	+	648.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163676, intron 1 of 29)	ID_B1|SINE|B4	1640.0	NM_001163675	239273.0	Mm.40537	NM_001033336	ENSMUSG00000032849	Abcc4	ABCC4-N1|D630049P08Rik|MOATB|MRP4	ATP-binding cassette, sub-family C (CFTR/MRP), member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-20952585-4	chr10	20952486	20952686	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026203)	promoter-TSS (NM_026203)	39.0	NM_001358561	52906.0	Mm.253280	NM_026203	ENSMUSG00000019986	Ahi1	1700015F03Rik|Ahi-1|D10Bwg0629e	Abelson helper integration site 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-90322423-2	chr18	90322323	90322523	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-187731.0	NM_198295	67988.0	Mm.268041	NM_198295	ENSMUSG00000024614	Tmx3	6430411B10Rik|A730024F05Rik|AV259382|Txndc10|mKIAA1830	thioredoxin-related transmembrane protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-75956283-4	chr3	75956181	75956381	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175193, exon 1 of 15)	exon (NM_175193, exon 1 of 15)	668.0	NM_175193	73124.0	Mm.249232	NM_175193	ENSMUSG00000034109	Golim4	3110027H23Rik|GIMPC|GPP130|Golph4|P138	golgi integral membrane protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-24419492-4	chr8	24419367	24419567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19479.0	NM_026931	69068.0	Mm.25775	NM_026931	ENSMUSG00000056313	Tcim	1110065B09Rik|1810011O10Rik|AW121743|AW321058	transcriptional and immune response regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-92783818-1	chr16	92783718	92783918	+	886.6666869999999	f0_balb.idr	intron (NM_001111022, intron 2 of 6)	intron (NM_001111022, intron 2 of 6)	42256.0	NM_001111021	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-50580655-2	chr17	50580555	50580755	+	899.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_013880, intron 1 of 5)	intron (NM_013880, intron 1 of 5)	71108.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	2.28301541754015	3.13721506695497	1.65626993159193	2.41039645639065	2.30267118201607	3.16016371173591	1.6684908508405	2.42320763357185	0.0375067085297559	0.965836670680783	0.998431161219273
Merged-chr19-40999087-4	chr19	40998966	40999166	+	938.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4531.0	NM_008528	17060.0	Mm.9749	NM_008528	ENSMUSG00000061132	Blnk	BASH|Bca|Ly-57|Ly57|Lyw-57|SLP-65	B cell linker	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-69295794-2	chr12	69295694	69295894	+	737.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027117)	promoter-TSS (NM_027117)	-887.0	NM_027117	69554.0	Mm.234368	NM_027117	ENSMUSG00000020978	Klhdc2	2310022K15Rik|D12Ertd522e|HCLP-1|LCP	kelch domain containing 2	protein-coding	1.28743052929112	1.82380761288097	0.716289533766896	0.703921002668352	1.30038679344146	1.84068913422435	0.949670109647738	0.706100026705046	0.168404020290366	0.90870989759803	0.998431161219273
Merged-chr5-71593956-1	chr5	71593856	71594056	+	744.0	f0_balb.idr	intron (NM_001359050, intron 2 of 2)	intron (NM_001359050, intron 2 of 2)	-45751.0	NM_030052	78174.0	Mm.60690	NM_030052	ENSMUSG00000049387	Cox7b2	4930503B16Rik	cytochrome c oxidase subunit VIIb2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-45678885-4	chr11	45678784	45678984	+	966.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-129199.0	NR_045876	100009664.0	Mm.415439	NR_045876		F630206G17Rik	-	RIKEN cDNA F630206G17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83193696-1	chr6	83193596	83193796	+	618.0	f1_c57bl6.idr	intron (NM_007835, intron 18 of 31)	intron (NM_007835, intron 18 of 31)	7750.0	NM_001347310	13191.0	Mm.6919	NM_007835	ENSMUSG00000031865	Dctn1	AL022633|DAP-150|DP-150|Glued|p150|p150-glued|p150<glued>	dynactin 1	protein-coding	-1.50811478453619	-0.99851579554048	-1.48484165847197	-1.49312904261012	-1.50577282675516	-1.47256636097272	-1.48255773576353	-1.49164560481169	-2.24133836997777	0.518237887813808	1
Merged-chr17-35090468-1	chr17	35090368	35090568	+	645.0	f1_c57bl6.idr	intron (NM_178592, intron 2 of 19)	intron (NM_178592, intron 2 of 19)	1177.0	NM_178592	193742.0	Mm.43745	NM_178592	ENSMUSG00000007036	Abhd16a	AI326074|Bat-5|Bat5|D17H6S82E|NG26	abhydrolase domain containing 16A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-61498916-3	chr11	61498836	61499036	+	929.822205	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-4670.0	NM_001291034	23939.0	Mm.38172	NM_011841	ENSMUSG00000001034	Mapk7	BMK-1|BMK1|ERK-5|ERK5|Erk5-T|PRKM7|b2b2346Clo	mitogen-activated protein kinase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-77775504-2	chr18	77775404	77775604	+	847.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007505, intron 1 of 11)	B1F2|SINE|Alu	-1619.0	NM_001357531	225745.0	Mm.39293	NM_146089	ENSMUSG00000041840	Haus1	BC024400|Ccdc5|HEI-C	HAUS augmin-like complex, subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-47812699-2	chr6	47812617	47812817	+	626.0	f0_balb.idr|f1_balb.idr	intron (NM_009787, intron 1 of 9)	intron (NM_009787, intron 1 of 9)	795.0	NM_009787	12304.0	Mm.2442	NM_009787	ENSMUSG00000025823	Pdia4	AI987846|Cai|ERp-72|Erp72	protein disulfide isomerase associated 4	protein-coding	1.45102773342329	2.89747453567076	2.39468159678582	1.06946065526482	1.77302223183742	2.50662040146536	1.1019965842384	1.71984561336808	-0.673161035576334	0.548697474353131	0.958294539645345
Merged-chr14-49172589-4	chr14	49172498	49172698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027492, intron 1 of 4)	CpG	352.0	NM_027492	70646.0	Mm.275688	NM_027492	ENSMUSG00000036282	Naa30	4930487N19Rik|5730533P17Rik|AI447922|AW322455|Nat12	N(alpha)-acetyltransferase 30, NatC catalytic subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-75456293-3	chr7	75456164	75456364	+	869.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 1 of 36)	CpG	730.0	NM_029332	75547.0	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-144270655-4	chr2	144270559	144270759	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289630)	promoter-TSS (NM_001289630)	-87.0	NM_024225	69178.0	Mm.273379	NM_024225	ENSMUSG00000027423	Snx5	0910001N05Rik|1810032P22Rik|AU019504|D2Ertd52e	sorting nexin 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-105737365-4	chr7	105737233	105737433	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025897)	promoter-TSS (NM_025897)	52.0	NM_133951	101867.0	Mm.231400	NM_025897	ENSMUSG00000030888	Rrp8	1500003O22Rik|2900001K19Rik|AW538116	ribosomal RNA processing 8, methyltransferase, homolog (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-4892277-2	chr3	4892177	4892377	+	660.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR9F|LTR|ERVK	93569.0	NR_045272	100503859.0	Mm.75172	NR_045272	ENSMUSG00000098659	1110015O18Rik	-	RIKEN cDNA 1110015O18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124440223-1	chr5	124440123	124440323	+	1000.0	f0_c57.idr	intron (NM_001310725, intron 1 of 6)	CpG	293.0	NM_001310725	67956.0	Mm.137966	NM_030241	ENSMUSG00000049327	Kmt5a	2410195B05Rik|AA617402|AW536475|PR-SET7|PR/SET07|Setd8	lysine methyltransferase 5A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83636105-3	chr6	83636005	83636205	+	954.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20011.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-8781846-2	chr12	8781746	8781946	+	800.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011519, intron 1 of 4)	intron (NM_011519, intron 1 of 4)	10450.0	NM_011519	20969.0	Mm.2580	NM_011519	ENSMUSG00000020592	Sdc1	AA408134|AA409076|CD138|Sstn|Synd|Synd1|syn-1	syndecan 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-101175314-4	chr2	101175212	101175412	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-449436.0	NM_009020	19374.0	Mm.4988	NM_009020	ENSMUSG00000032864	Rag2	Rag-2	recombination activating gene 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-22645342-3	chr10	22645257	22645457	+	735.861084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178934, intron 1 of 4)	CpG	346.0	NM_178934	353169.0	Mm.473705	NM_178934	ENSMUSG00000037490	Slc2a12	GLUT-12|Glut12	solute carrier family 2 (facilitated glucose transporter), member 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-121719509-2	chr9	121719409	121719609	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_010918, exon 2 of 17)	exon (NM_010918, exon 2 of 17)	328.0	NM_010918	18087.0	Mm.32842	NM_010918	ENSMUSG00000032525	Nktr	5330401F18Rik|D9Wsu172e	natural killer tumor recognition sequence	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36802430-2	chr18	36802330	36802530	+	793.25	f1_balb.idr|f1_c57bl6.idr	TTS (NR_027885)	TTS (NR_027885)	667.0	NR_027885	378472.0	Mm.482379	NR_027885		Vaultrc5	Gm22653|Mvg1	vault RNA component 5	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-147911907-4	chr5	147911811	147912011	+	904.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17096.0	NM_027872	71706.0	Mm.153218	NM_027872	ENSMUSG00000029650	Slc46a3	1200006F02Rik	solute carrier family 46, member 3	protein-coding	1.32654926074652	0.921615079510441	1.11703832000987	1.73173778956206	1.45262603036063	1.9728762085746	1.12409201339222	1.40583873409092	0.751822729239091	0.542424175583243	0.954935047166076
Merged-chr15-64050297-2	chr15	64050197	64050397	+	833.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360037, intron 1 of 11)	intron (NM_001360037, intron 1 of 11)	9467.0	NM_001360038	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-47652748-4	chr9	47652639	47652839	+	708.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	122387.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	2.11352055022726	2.90998911142504	1.12222628645859	2.58481747912846	1.9183460823322	2.03124121320637	1.12926929823749	1.35631603117566	-1.6586808617224	0.127938416541738	0.559812225261772
Merged-chr5-130075947-1	chr5	130075847	130076047	+	541.0	f0_balb.idr	intron (NM_013837, intron 1 of 5)	(TTTTG)n|Simple_repeat|Simple_repeat	2621.0	NM_013837	22021.0	Mm.332720	NM_013837	ENSMUSG00000034118	Tpst1	R75054|Tango13a	protein-tyrosine sulfotransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-35106780-3	chr7	35106683	35106883	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MEb|LINE|L1	-12510.0	NM_001287521	12606.0	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-55821318-3	chr1	55821206	55821406	+	881.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-109935.0	NR_045837	329159.0	Mm.98697	NR_045837	ENSMUSG00000099950	9130227L01Rik	-	RIKEN cDNA 9130227L01 gene	ncRNA	1.46930836487825	1.79624906916003	1.01921371145022	1.00330241737574	1.90484606694515	2.25267171293942	1.74632425907377	1.55638590918484	1.69331116106717	0.149632342585294	0.601628862608932
Merged-chr2-41287719-2	chr2	41287619	41287819	+	929.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_053011, intron 27 of 90)	intron (NM_053011, intron 27 of 90)	1159849.0	NR_105754	102465171.0		NR_105754	ENSMUSG00000098660	Mir6336	Gm27584|mmu-mir-6336	microRNA 6336	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-75170652-2	chr18	75170552	75170752	+	588.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027727, intron 13 of 16)	intron (NM_027727, intron 13 of 16)	126665.0	NR_045394	100503117.0	Mm.250517	NR_045393	ENSMUSG00000102047	2010010A06Rik	5033420E22Rik	RIKEN cDNA 2010010A06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-57761437-4	chr15	57761334	57761534	+	975.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199449, intron 1 of 3)	intron (NM_199449, intron 1 of 3)	66767.0	NM_199449	387609.0	Mm.36557	NM_199449	ENSMUSG00000071757	Zhx2	Afr-1|Afr1|Raf|mKIAA0854	zinc fingers and homeoboxes 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-51202922-1	chr13	51202822	51203022	+	773.666687	f0_balb.idr	non-coding (NR_132443, exon 1 of 1)	non-coding (NR_132443, exon 1 of 1)	144.0	NR_132443	667728.0		NR_132443		Hist1h2al	EG667728	histone cluster 1, H2al	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-154662079-2	chr2	154661979	154662179	+	681.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_029362, intron 1 of 4)	intron (NM_029362, intron 1 of 4)	5053.0	NM_029362	75608.0	Mm.262480	NM_029362	ENSMUSG00000038467	Chmp4b	2010012F05Rik|C76846|Snf7-2	charged multivesicular body protein 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-34048886-5	chr11	34048891	34049091	+	954.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010696, intron 1 of 20)	intron (NM_010696, intron 1 of 20)	2063.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152015784-4	chr1	152015684	152015884	+	752.520813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197990, intron 1 of 5)	intron (NM_197990, intron 1 of 5)	74536.0	NM_197990	69399.0	Mm.278031	NM_197990	ENSMUSG00000032666	1700025G04Rik	2610510E02Rik|2900042O04Rik	RIKEN cDNA 1700025G04 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-152709274-4	chr2	152709175	152709375	+	964.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001159551)	TTS (NM_001159551)	22127.0	NM_025543	66405.0	Mm.440291	NM_025543	ENSMUSG00000042814	Mcts2	2400002F11Rik|MCT-2	malignant T cell amplified sequence 2	protein-coding	3.07338777360145	2.35094399857448	3.24912568185965	3.08776005860913	2.79977694739618	2.36785875518613	2.45084030104749	3.02357681838964	-0.554260275464295	0.426310107633534	0.902023751857747
Merged-chr11-118446665-2	chr11	118446565	118446765	+	604.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001204130, intron 3 of 3)	intron (NM_001204130, intron 3 of 3)	3131.0	NM_001204130	56745.0	Mm.23845	NM_019959	ENSMUSG00000017446	C1qtnf1	1600017K21Rik|CTRP1|Zsig37	C1q and tumor necrosis factor related protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43531821-2	chr4	43531721	43531921	+	977.916626	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011602, exon 57 of 57)	3' UTR (NM_011602, exon 57 of 57)	-8267.0	NM_001277875	22004.0	Mm.646	NM_009416	ENSMUSG00000028464	Tpm2	Tpm-2|Trop-2	tropomyosin 2, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-92216894-4	chr1	92216806	92217006	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36565.0	NM_207225	208727.0	Mm.318567	NM_207225	ENSMUSG00000026313	Hdac4	4932408F19Rik|HD4	histone deacetylase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-86659145-4	chr6	86659041	86659241	+	862.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010751, intron 3 of 5)	intron (NM_010751, intron 3 of 5)	10018.0	NM_010751	17119.0	Mm.279580	NM_010751	ENSMUSG00000001156	Mxd1	AW122478|Mad|Mad1	MAX dimerization protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-34514297-2	chr14	34514197	34514397	+	956.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_030062, intron 2 of 2)	intron (NM_030062, intron 2 of 2)	8504.0	NM_030062	78243.0	Mm.117483	NM_030062	ENSMUSG00000021797	9230112D13Rik	-	RIKEN cDNA 9230112D13 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-59528102-2	chr11	59528002	59528202	+	802.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13467.0	NM_001359638	216799.0	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-54719150-4	chr3	54719043	54719243	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358017, intron 20 of 24)	intron (NM_001358017, intron 20 of 24)	16221.0	NM_027148	69639.0	Mm.29253	NM_027148	ENSMUSG00000027752	Exosc8	2310032N20Rik|CIP3|mKIAA4013	exosome component 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-87768120-1	chr11	87768020	87768220	+	565.0	f1_balb.idr	intron (NM_172449, intron 10 of 31)	intron (NM_172449, intron 10 of 31)	7579.0	NM_172449	207777.0	Mm.342019	NM_172449	ENSMUSG00000034156	Tspoap1	Bzrap1|D230016K05|PRAX-1|mKIAA0612	TSPO associated protein 1	protein-coding	0.322950429611093	0.353504242864654	0.343646863236135	0.335942912337026	0.499618813954259	0.928940647036995	1.00930543518642	1.41462099653147	4.59403408782338	0.00988651466018648	1
Merged-chr4-128689956-4	chr4	128689850	128690050	+	968.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018774, intron 1 of 14)	intron (NM_018774, intron 1 of 14)	1212.0	NM_018774	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-120088769-3	chr5	120088680	120088880	+	845.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27733.0	NM_028762	74111.0	Mm.41022	NM_028762	ENSMUSG00000029594	Rbm19	1200009A02Rik|AV302714|NPO	RNA binding motif protein 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4055766-2	chr19	4055666	4055866	+	807.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3681.0	NM_144869	225884.0	Mm.440201	NM_144869	ENSMUSG00000058216	Gstp3	-	glutathione S-transferase pi 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-39182402-2	chr10	39182302	39182502	+	549.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13B|LTR|ERVK	-18608.0	NM_001127376	327743.0	Mm.208111	NM_001127376	ENSMUSG00000062074	Wisp3	CCN6|Gm735|WISP-3	WNT1 inducible signaling pathway protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-79448791-3	chr8	79448718	79448918	+	922.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-49350.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-43494221-2	chr11	43494121	43494321	+	936.625	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19915.0	NM_026979	69183.0	Mm.390374	NM_026979	ENSMUSG00000046491	C1qtnf2	1810033K05Rik|CTRP2	C1q and tumor necrosis factor related protein 2	protein-coding	2.56413767659604	1.31028938394914	2.32733041442292	2.36442497061044	2.94296500716753	1.31745823883264	2.22540215382823	1.87567411943598	0.041853654284965	0.967279020964364	0.998431161219273
Merged-chr10-80142300-4	chr10	80142185	80142385	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025313)	promoter-TSS (NM_025313)	10.0	NM_001347092	66043.0	Mm.278560	NM_025313	ENSMUSG00000003072	Atp5d	0610008F14Rik|1500000I11Rik|AA960090|AI876556|AU020773|Atp5f1d|C85518	ATP synthase, H+ transporting, mitochondrial F1 complex, delta subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-88270716-4	chr7	88270618	88270818	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7367.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-179668216-4	chr1	179668136	179668336	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178653)	promoter-TSS (NM_178653)	5.0	NM_178653	109232.0	Mm.136458	NM_178653	ENSMUSG00000038936	Sccpdh	AW214504|C330023F11Rik	saccharopine dehydrogenase (putative)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-34501785-4	chr5	34501704	34501904	+	985.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139064, intron 2 of 5)	intron (NM_139064, intron 2 of 5)	12175.0	NM_139064	231130.0	Mm.28615	NM_139064	ENSMUSG00000059866	Tnip2	1810020H16Rik|ABIN-2|AI428870	TNFAIP3 interacting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-45262140-4	chr2	45262024	45262224	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-144682.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-43361675-2	chr7	43361575	43361775	+	708.083374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	10334.0	NM_145581	233186.0	Mm.290569	NM_145581	ENSMUSG00000039013	Siglecf	Siglec5|mSiglec-F	sialic acid binding Ig-like lectin F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25181633-4	chr7	25181538	25181738	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26569.0	NR_045848	434147.0	Mm.59171	NM_001033781	ENSMUSG00000074274	D930028M14Rik	EG434147	RIKEN cDNA D930028M14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-79926992-4	chr10	79926899	79927099	+	994.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007880)	promoter-TSS (NM_007880)	-44.0	NM_001288626	13496.0	Mm.301282	NM_007880	ENSMUSG00000019564	Arid3a	Bright|Dri1|Dril1	AT rich interactive domain 3A (BRIGHT-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122281484-4	chr8	122281394	122281594	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009569)	promoter-TSS (NM_009569)	-647.0	NM_009569	22761.0	Mm.3105	NM_009569	ENSMUSG00000049577	Zfpm1	FOG|Fog1	zinc finger protein, multitype 1	protein-coding	5.50076625122665	5.69831086930183	5.45049980620914	6.16448486753104	5.02498535673443	5.78804918401244	4.71545314678251	6.12421431148492	-0.235142360957604	0.479364810412468	0.928092227925527
Merged-chr1-191119104-4	chr1	191118978	191119178	+	962.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20664.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	3.33112926018595	3.48106015760328	2.24845519805595	2.54417650933591	4.28588155803272	3.50698828446564	4.03010084123061	3.91371767714948	1.46918809554599	0.0108107643912572	0.115193207074871
Merged-chr8-84206840-2	chr8	84206731	84206931	+	667.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-1687.0	NR_029740	387216.0		NR_029740	ENSMUSG00000065611	Mir23a	Mirn23a|mir-23a|mmu-mir-23a	microRNA 23a	ncRNA	1.85018497110532	1.64701752074823	1.4225888867119	2.04665218500805	2.04710277198112	1.81960991964754	2.01562629475785	1.71458897419328	0.422627345921302	0.67083737148049	0.99359666617512
Merged-chr9-5421013-2	chr9	5420913	5421113	+	642.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	75537.0	NM_009808	12364.0	Mm.42163	NM_009808	ENSMUSG00000025887	Casp12	-	caspase 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-72285519-2	chr8	72285419	72285619	+	572.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33543.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	-1.39239040096365	-1.50706362993767	-1.51637061241093	-1.52401564492204	-1.25712099376264	-1.5050467680107	-1.51426371558223	-1.52264718775774	0.640753741356348	0.855918148133186	1
Merged-chr7-105554347-4	chr7	105554242	105554442	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011421)	promoter-TSS (NM_011421)	-18.0	NM_011421	20597.0	Mm.4628	NM_011421	ENSMUSG00000037049	Smpd1	A-SMase|ASM|Zn-SMase|aSMase	sphingomyelin phosphodiesterase 1, acid lysosomal	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-20714110-2	chr14	20714010	20714210	+	655.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001252081, exon 10 of 26)	exon (NM_001252081, exon 10 of 26)	6558.0	NM_001252082	268721.0	Mm.275082	NM_027996	ENSMUSG00000021819	Zswim8	2310021P13Rik|4832404P21Rik|Kiaa0913|mKIAA0913	zinc finger SWIM-type containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-17641066-3	chr18	17640970	17641170	+	979.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60080.0	NR_045374	75162.0	Mm.60874	NR_045374		4930545E07Rik	-	RIKEN cDNA 4930545E07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71923583-3	chr8	71923460	71923660	+	863.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133358, intron 1 of 3)	intron (NM_133358, intron 1 of 3)	735.0	NM_133358	170938.0	Mm.480419	NM_133358	ENSMUSG00000066880	Zfp617	Zfps11-6	zinc finger protein 617	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-123798022-3	chr3	123797914	123798114	+	808.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-107162.0	NR_121616	83398.0	Mm.443908	NM_031186	ENSMUSG00000027977	Ndst3	4921531K01Rik|4930511P15Rik|N-HSST 3|NDST-3	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19697002-2	chr7	19696902	19697102	+	763.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_009696, exon 4 of 4)	exon (NM_009696, exon 4 of 4)	1396.0	NM_001305819	11816.0	Mm.305152	NM_009696	ENSMUSG00000002985	Apoe	AI255918|Apo-E	apolipoprotein E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90528302-4	chr2	90528194	90528394	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	-49120.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	2.63016120547689	2.59802554557802	2.63559158183263	2.77183867033048	3.03986303744532	1.59665002510458	3.35307905243896	2.78605560354761	0.366604901339367	0.635642803478443	0.982417279970648
Merged-chr2-59343013-4	chr2	59342908	59343108	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 16 of 20)	intron (NM_175464, intron 16 of 20)	43674.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-111015108-4	chr7	111015014	111015214	+	997.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13837.0	NM_009431	22083.0	Mm.255858	NM_009431	ENSMUSG00000005609	Ctr9	AA409336|Sh2bp1|Tsbp|Tsp|mKIAA0155	CTR9 homolog, Paf1/RNA polymerase II complex component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71294819-4	chr17	71294815	71295015	+	992.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357337, intron 2 of 7)	L2c|LINE|L2	16096.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	0.600205892324587	0.185692271961219	0.432048659293685	0.282808438736964	-0.0136144655236065	0.00156456014300019	-0.00338945799582058	-0.00760567496559708	-3.89217741178834	0.0618069747004964	1
Merged-chr11-60838700-2	chr11	60838600	60838800	+	851.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001172112, intron 1 of 6)	intron (NM_001172112, intron 1 of 6)	8069.0	NM_145428	216820.0	Mm.21475	NM_145428	ENSMUSG00000042569	Dhrs7b	BC003479|C79874|C80074|PexRAP	dehydrogenase/reductase (SDR family) member 7B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-31218695-2	chr5	31218595	31218795	+	778.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008014, intron 1 of 9)	B1_Mus2|SINE|Alu	1850.0	NM_008014	14208.0	Mm.14501	NM_008014	ENSMUSG00000029147	Ppm1g	AI385652|Fin13	protein phosphatase 1G (formerly 2C), magnesium-dependent, gamma isoform	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6062138-4	chr19	6062006	6062206	+	946.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_028454)	TTS (NM_028454)	899.0	NM_013859	29805.0	Mm.2310	NM_013859	ENSMUSG00000075227	Znhit2	C11orf5|Fon|ORF6|Znhit2-ps	zinc finger, HIT domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-8431167-2	chr4	8431086	8431286	+	738.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-104458.0	NM_021518	59021.0	Mm.397471	NM_021518	ENSMUSG00000047187	Rab2a	9330148M11Rik|C80220|Rab2	RAB2A, member RAS oncogene family	protein-coding	1.40687141322182	0.893009731281644	1.92932921954887	1.06229073515258	1.30528244623358	1.12457431064911	1.26883119267275	1.70544260620788	-0.0997027626876718	0.936974327535296	0.998431161219273
Merged-chr3-96556783-2	chr3	96556683	96556883	+	701.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_040409, intron 3 of 3)	intron (NR_040409, intron 3 of 3)	-1174.0	NM_023719	56338.0	Mm.410189	NM_023719	ENSMUSG00000038393	Txnip	1200008J08Rik|AA682105|Hyplip1|THIF|Tbp-2|VDUP1	thioredoxin interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-31051657-2	chr7	31051560	31051760	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022007)	promoter-TSS (NM_022007)	-206.0	NM_022007	57780.0	Mm.41770	NM_022007	ENSMUSG00000036578	Fxyd7	1110035I01Rik	FXYD domain-containing ion transport regulator 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-95416069-6	chr10	95415942	95416142	+	781.277771	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001168657)	promoter-TSS (NM_001168657)	170.0	NM_001168655	216233.0	Mm.474283	NM_007706	ENSMUSG00000020027	Socs2	8030460M17|AI527257|AW108012|CIS2|Cish2|D130043N08Rik|JAB|SOCS-2|SSI-2|hg	suppressor of cytokine signaling 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-18469418-1	chr10	18469318	18469518	+	780.5	f0_balb.idr	promoter-TSS (NM_001163592)	promoter-TSS (NM_001163592)	-563.0	NM_001163592	215819.0	Mm.297971	NM_173390	ENSMUSG00000039835	Nhsl1	5730409E15Rik|A630035H13Rik|A730096F01|BC013565|D10Bwg0940e|mKIAA1357	NHS-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-57879464-3	chr18	57879406	57879606	+	740.2023929999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009194, exon 1 of 27)	exon (NM_009194, exon 1 of 27)	828.0	NM_009194	20496.0	Mm.399997	NM_009194	ENSMUSG00000024597	Slc12a2	9330166H04Rik|Nkcc1|mBSC2|sy-ns	solute carrier family 12, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171567059-3	chr1	171566974	171567174	+	762.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018729, intron 1 of 8)	intron (NM_018729, intron 1 of 8)	7881.0	NM_018729	18106.0	Mm.2299	NM_018729	ENSMUSG00000004709	Cd244	2B4|C9.1|F730046O15Rik|Ly90|NAIL|NKR2B4|Nmrk|SLAMF4	CD244 natural killer cell receptor 2B4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-136518841-2	chr5	136518741	136518941	+	581.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291238, intron 1 of 22)	ID_B1|SINE|B4	47140.0	NM_001291239	13047.0	Mm.320317	NM_009986	ENSMUSG00000029705	Cux1	CDP|Cutl1|Cux|Cux-1	cut-like homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-114273601-2	chr6	114273501	114273701	+	868.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-9034.0	NM_178703	232333.0	Mm.5260	NM_178703	ENSMUSG00000030310	Slc6a1	A730043E01|GABATHG|GABATR|GAT-1|Gabt|Gabt1|Gat1|XT-1|Xtrp1	solute carrier family 6 (neurotransmitter transporter, GABA), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-10316744-2	chr17	10316644	10316844	+	689.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021881, intron 1 of 6)	intron (NM_021881, intron 1 of 6)	2617.0	NM_021881	19317.0	Mm.130694	NM_021881	ENSMUSG00000062078	Qk	1110003F05Rik|1500005P18|QkI|l(17)-1Wis|l17Wis1	quaking	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-12289863-1	chr14	12289763	12289963	+	574.0	f0_balb.idr	intron (NM_001284385, intron 3 of 4)	intron (NM_001284385, intron 3 of 4)	5660.0	NM_001284386	218734.0	Mm.44068	NM_146051	ENSMUSG00000033111	3830406C13Rik	-	RIKEN cDNA 3830406C13 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-63132941-4	chr9	63132809	63133009	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14071.0	NM_172446	207667.0	Mm.36349	NM_172446	ENSMUSG00000022245	Skor1	AV273001|C230094B15Rik|Corl1|Lbxcor1	SKI family transcriptional corepressor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126626016-4	chr7	126625897	126626097	+	782.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019738)	promoter-TSS (NM_019738)	-527.0	NM_019738	56312.0	Mm.18742	NM_019738	ENSMUSG00000030717	Nupr1	2310032H04Rik|Com1|p8	nuclear protein transcription regulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-68717498-1	chr3	68717398	68717598	+	664.666687	f0_balb.idr	Intergenic	Intergenic	26074.0	NM_008351	16159.0	Mm.103783	NM_008351	ENSMUSG00000027776	Il12a	IL-12p35|Il-12a|Ll12a|p35	interleukin 12a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-113003122-2	chr13	113003022	113003222	+	577.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9254.0	NM_001037914	622408.0	Mm.360976	NM_001037914	ENSMUSG00000074651	Mcidas	EG622408|Gm6320|Idas|Mci|Mcin	multiciliate differentiation and DNA synthesis associated cell cycle protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-102990336-2	chr11	102990236	102990436	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	9585.0	NR_105896	102466988.0		NR_105896	ENSMUSG00000098613	Mir6931	Gm27303|mmu-mir-6931	microRNA 6931	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-89980537-4	chr7	89980444	89980644	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_021876, exon 1 of 12)	5' UTR (NM_021876, exon 1 of 12)	432.0	NM_021876	13626.0	Mm.380914	NM_021876	ENSMUSG00000030619	Eed	l(7)5Rn|l7Rn5|lusk	embryonic ectoderm development	protein-coding	3.23752518714315	3.63931058854722	1.69569861047554	3.6359789890098	3.26541126762776	3.0337872463918	4.01348428645796	4.38852757444732	0.815036213545197	0.219839908097923	0.710826235364411
Merged-chr2-162929557-2	chr2	162929457	162929657	+	653.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1951.0	NM_026499	67996.0	Mm.24042	NM_026499	ENSMUSG00000016921	Srsf6	1210001E11Rik|AI314910|AW146126|Sfrs6	serine/arginine-rich splicing factor 6	protein-coding	1.25189890231367	1.2982517531853	1.47851994531223	1.42989542050419	1.0374067244302	0.774099730615846	0.762902218914729	1.08718478397784	-2.15296313630351	0.124457067804841	0.552368396864051
Merged-chr7-128232199-2	chr7	128232099	128232299	+	672.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER21A|LTR|ERV1	-5158.0	NM_146205	233912.0	Mm.475117	NM_146205	ENSMUSG00000042178	Armc5	AW049683|BC032200	armadillo repeat containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-88865392-4	chr4	88865296	88865496	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14805.0	NM_177348	230405.0	Mm.246593	NM_177348	ENSMUSG00000045364	Ifne	Ifn-tau-1|Ifne1|Ifnt1|Infe1	interferon epsilon	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-125416391-3	chr8	125416274	125416474	+	871.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	76459.0	NM_001081337	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	4.40165634264088	4.49175532802267	3.6667521303836	4.90072544814249	2.74016486615879	2.24646898682869	1.89291311423144	2.06302751009826	-3.33846697157181	1.06835304581433e-07	9.28847814759444e-06
Merged-chr11-51926406-4	chr11	51926296	51926496	+	957.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41235.0	NM_029976	52626.0	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-9138637-2	chr4	9138537	9138737	+	885.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-130656.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-129518205-4	chr6	129518095	129518295	+	843.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001081186, exon 5 of 5)	3' UTR (NM_001081186, exon 5 of 5)	5638.0	NM_001081186	330428.0	Mm.44237	NM_001081186	ENSMUSG00000030160	Tmem52b	D630042F21Rik	transmembrane protein 52B	protein-coding	-1.26571374789235	-1.51209590594483	-1.52146493977932	-1.38174326885381	-1.5409024774237	-1.51006559722904	-1.51934399588257	-1.52778336220656	-1.78996300869195	0.608863169873916	1
Merged-chr4-137603435-2	chr4	137603331	137603531	+	866.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355588, intron 1 of 26)	B1F1|SINE|Alu	9259.0	NM_130879	170707.0	Mm.218478	NM_130879	ENSMUSG00000043411	Usp48	2810449C13Rik|AI115503|BC021769|D330022K21Rik|Usp31	ubiquitin specific peptidase 48	protein-coding	-0.39775221082262	-0.741028196029578	-0.743853948694094	-0.345221339453065	-0.612337384474907	-0.740389026862267	-0.743232086238244	-0.74564484537528	-2.10503621449659	0.449339302856489	1
Merged-chr19-44990855-2	chr19	44990755	44990955	+	610.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011976, intron 1 of 14)	intron (NM_011976, intron 1 of 14)	1511.0	NM_011976	26456.0	Mm.34404	NM_011976	ENSMUSG00000025207	Sema4g	AI507908|AW554132	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-107378355-4	chr11	107378259	107378459	+	977.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 1 of 9)	intron (NR_153311, intron 1 of 9)	92361.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-144928908-2	chr4	144928808	144929008	+	593.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001172424)	TTS (NM_001172424)	35771.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100875927-4	chr7	100875828	100876028	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081116, intron 20 of 20)	intron (NM_001081116, intron 20 of 20)	6481.0	NR_037289	100526508.0		NR_037289	ENSMUSG00000093296	Mir3102	mmu-mir-3102	microRNA 3102	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-118901862-2	chr2	118901762	118901962	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001045523, intron 1 of 6)	CpG	247.0	NM_001045523	228536.0	Mm.330487	NM_001045523	ENSMUSG00000040007	Bahd1	AL022997|AW541238|Gm117|mKIAA0945	bromo adjacent homology domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-121592631-3	chr5	121592540	121592740	+	841.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009656, intron 1 of 12)	PB1D10|SINE|Alu	1184.0	NM_009656	11669.0	Mm.284446	NM_009656	ENSMUSG00000029455	Aldh2	AHD-M1|ALDH-E2|ALDHI|Ahd-5|Ahd5	aldehyde dehydrogenase 2, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91090431-3	chr2	91090324	91090524	+	837.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-6254.0	NM_011355	20375.0	Mm.1302	NM_011355	ENSMUSG00000002111	Spi1	Dis-1|Dis1|PU.1|Sfpi-1|Sfpi1|Spi-1|Tcfpu1|Tfpu.1	spleen focus forming virus (SFFV) proviral integration oncogene	protein-coding	1.47083264016889	1.18844108622336	1.73586203274279	2.22500706758315	1.85412670991426	1.95258241679252	1.74886051409687	2.23683353314296	0.680799211813637	0.515999371556235	0.947402641287243
Merged-chr5-113828528-2	chr5	113828437	113828637	+	798.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009151, intron 1 of 1)	intron (NM_009151, intron 1 of 1)	1964.0	NM_009151	20345.0	Mm.332590	NM_009151	ENSMUSG00000048163	Selplg	CD162|Psgl-1|Psgl1|Selp1|Selpl	selectin, platelet (p-selectin) ligand	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-20428838-2	chr13	20428734	20428934	+	872.833374	f0_balb.idr|f1_balb.idr	intron (NM_080288, intron 15 of 21)	intron (NM_080288, intron 15 of 21)	-44156.0	NM_198093	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	3.6113647047447	3.18074119009392	2.80503480473601	2.39571757555838	4.03866029776179	4.17799447307845	4.04914365854055	3.54994405773397	1.33862879983294	0.0161747045827302	0.153047401879808
Merged-chr4-8912183-1	chr4	8912083	8912283	+	1000.0	f0_c57.idr	Intergenic	Intergenic	160859.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-159646125-4	chr2	159646029	159646229	+	921.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-301212.0	NR_040498	71081.0	Mm.383491	NR_040498	ENSMUSG00000085198	4933416E03Rik	-	RIKEN cDNA 4933416E03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71271872-3	chr8	71271762	71271962	+	803.716675	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001142323)	promoter-TSS (NM_001142323)	728.0	NM_001163042	76478.0	Mm.27355	NM_029621	ENSMUSG00000035439	Haus8	2410004L22Rik|Hice1	4HAUS augmin-like complex, subunit 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-92058663-4	chr2	92058580	92058780	+	968.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-34510.0	NM_011957	26427.0	Mm.10353	NM_011957	ENSMUSG00000027230	Creb3l1	Oasis	cAMP responsive element binding protein 3-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167802082-2	chr2	167801982	167802182	+	795.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	110905.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95498417-1	chr3	95498317	95498517	+	541.0	f1_balb.idr	promoter-TSS (NM_007802)	promoter-TSS (NM_007802)	-793.0	NM_007802	13038.0	Mm.272085	NM_007802	ENSMUSG00000028111	Ctsk	AI323530|MMS10-Q|Ms10q|catK	cathepsin K	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-9529886-2	chr15	9529786	9529986	+	725.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008372)	promoter-TSS (NM_008372)	-10.0	NM_008372	16197.0	Mm.389	NM_008372	ENSMUSG00000003882	Il7r	CD127|IL-7Ralpha	interleukin 7 receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-33243293-3	chr4	33243248	33243448	+	609.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5439.0	NM_001033225	108767.0	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-136636894-6	chr1	136636767	136636967	+	770.8229980000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	11966.0	NM_001160251	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-73442852-2	chr14	73442752	73442952	+	630.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57563.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-94974661-4	chr3	94974576	94974776	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001293716)	promoter-TSS (NM_001293716)	-55.0	NM_001293715	107650.0	Mm.217222	NM_175356	ENSMUSG00000038861	Pi4kb	ESTM41|PI4K-beta|PI4Kbeta|Pik4cb	phosphatidylinositol 4-kinase beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-96294911-4	chr10	96294821	96295021	+	793.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	68714.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16017627-1	chr7	16017527	16017727	+	600.333313	f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-18132.0	NM_001081418	243842.0	Mm.440249	NM_001081418	ENSMUSG00000070808	Bicra	Gltscr1	BRD4 interacting chromatin remodeling complex associated protein	protein-coding	0.909641173098247	0.736817830818839	0.287122564349292	0.428022657804657	0.27793728303601	0.293260736444524	0.288221954964786	0.769225929072953	-1.36610608335771	0.486376423652184	1
Merged-chr19-6358312-1	chr19	6358212	6358412	+	544.0	f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-5378.0	NM_011750	22668.0	Mm.256422	NM_011750	ENSMUSG00000024949	Sf1	BBP|MZFM|WBP4|Zfp162	splicing factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-76142055-4	chr5	76141952	76142152	+	993.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020611, intron 1 of 5)	intron (NM_020611, intron 1 of 5)	1779.0	NM_020611	57357.0	Mm.289446	NM_020611	ENSMUSG00000029233	Srd5a3	1110025P14Rik|A430076C09|AV364670|AW987574|D730040M03Rik|H5ar|S5AR 3|Srd5a2l	steroid 5 alpha-reductase 3	protein-coding	1.86688337959991	2.41757494757104	1.27807104253622	1.74196780081774	1.37593194205203	2.43721468688769	1.28718121966424	1.01488289851615	-0.598008384622089	0.601546131551305	0.973338823574839
Merged-chr6-114250462-4	chr6	114250341	114250541	+	691.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_172890)	TTS (NM_172890)	-32194.0	NM_178703	232333.0	Mm.5260	NM_178703	ENSMUSG00000030310	Slc6a1	A730043E01|GABATHG|GABATR|GAT-1|Gabt|Gabt1|Gat1|XT-1|Xtrp1	solute carrier family 6 (neurotransmitter transporter, GABA), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-67176049-3	chr17	67175947	67176147	+	824.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 2 of 32)	intron (NM_001357625, intron 2 of 32)	-149812.0	NR_049205	100885844.0		NR_049205	ENSMUSG00000093508	Mir5709	Gm22041|mir-5709|mmu-mir-5709	microRNA 5709	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-83675610-4	chr17	83675498	83675698	+	938.474976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	-30565.0	NM_001171054	116871.0	Mm.277668	NM_054082	ENSMUSG00000055817	Mta3	1110002J22Rik|mKIAA1266	metastasis associated 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-29986451-4	chr11	29986354	29986554	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146016, intron 2 of 41)	RLTR20C|LTR|ERVK	39579.0	NM_146016	237711.0	Mm.445271	NM_146016	ENSMUSG00000044072	Eml6	2900083P10Rik|C230094A16Rik|EMAP-6	echinoderm microtubule associated protein like 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107524197-1	chr9	107524097	107524297	+	870.0	f1_balb.idr	intron (NM_001174048, intron 24 of 37)	intron (NM_001174048, intron 24 of 37)	-9748.0	NM_019704	56395.0	Mm.260153	NM_019704	ENSMUSG00000010045	Tmem115	C78915|Pl6|Pp6	transmembrane protein 115	protein-coding	1.51121738246766	0.868913392701474	0.852767693100091	1.79845536163219	1.16527211637472	0.872503143913218	1.77944596775659	1.8092322186436	0.468515562089103	0.73495662712816	0.998431161219273
Merged-chr4-53032631-2	chr4	53032531	53032731	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_013454, exon 50 of 50)	3' UTR (NM_013454, exon 50 of 50)	20751.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33375633-4	chr16	33375507	33375707	+	866.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5129.0	NR_045709	100502742.0	Mm.217880	NR_045709	ENSMUSG00000097318	1700007L15Rik	linc-Iqcg|linc1609	RIKEN cDNA 1700007L15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-38060848-2	chr15	38060748	38060948	+	557.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001112721, intron 1 of 58)	intron (NM_001112721, intron 1 of 58)	18006.0	NM_001112721	70790.0	Mm.476840	NM_027553	ENSMUSG00000037487	Ubr5	Edd|Edd1	ubiquitin protein ligase E3 component n-recognin 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-49049426-4	chr10	49049347	49049547	+	998.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	738490.0	NM_001358866	14806.0	Mm.185993	NM_010349	ENSMUSG00000056073	Grik2	AW124492|C130030K03Rik|GluK2|Glur-6|Glur6|Glurbeta2	glutamate receptor, ionotropic, kainate 2 (beta 2)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88544866-2	chr3	88544766	88544966	+	823.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_016899, intron 2 of 4)	intron (NM_016899, intron 2 of 4)	3413.0	NM_016899	53868.0	Mm.26994	NM_016899	ENSMUSG00000008601	Rab25	AV012978	RAB25, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-20961695-4	chr9	20961605	20961805	+	899.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1817.0	NM_001199432	13433.0	Mm.128580	NM_010066	ENSMUSG00000004099	Dnmt1	Cxxc9|Dnmt|Dnmt1o|MCMT|MTase|Met-1|Met1|MommeD2|m.MmuI	DNA methyltransferase (cytosine-5) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-133611027-2	chr1	133610927	133611127	+	694.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009227)	promoter-TSS (NM_009227)	-747.0	NM_009227	20643.0	Mm.249110	NM_009227	ENSMUSG00000090553	Snrpe	AL022645|C76690|SME	small nuclear ribonucleoprotein E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75137277-4	chr11	75137175	75137375	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001002764, intron 13 of 18)	intron (NM_001002764, intron 13 of 18)	30877.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-134307745-4	chr4	134307630	134307830	+	965.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7390.0	NM_001039048	433766.0	Mm.331961	NM_001039048	ENSMUSG00000028834	Trim63	MuRF1|RF1|Rnf28	tripartite motif-containing 63	protein-coding	1.06598318935234	0.365073404657939	0.355485240826615	0.348000379259246	1.08001468307753	0.36721782281631	0.35761072467981	1.33701446364419	1.36836537615561	0.477653908718774	1
Merged-chr4-125063916-2	chr4	125063816	125064016	+	943.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_175223, intron 2 of 5)	intron (NM_175223, intron 2 of 5)	1741.0	NM_175223	75563.0	Mm.50304	NM_175223	ENSMUSG00000042707	Dnali1	1700023A09Rik|AW049135	dynein, axonemal, light intermediate polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-8848365-4	chr10	8848268	8848468	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 2 of 19)	intron (NM_175155, intron 2 of 19)	37702.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	-1.06997269762433	-1.30473905204845	-1.3145270772132	-1.32256725251374	-1.06385251204029	-1.30261794616352	-1.3123112828633	-1.32112806497905	0.0394047164033882	0.991001358494878	1
Merged-chr7-28969822-2	chr7	28969722	28969922	+	608.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7490.0	NM_001360548	60595.0	Mm.81144	NM_021895	ENSMUSG00000054808	Actn4	C77391	actinin alpha 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-46634264-4	chr13	46634154	46634354	+	916.2291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026056, intron 7 of 12)	intron (NM_026056, intron 7 of 12)	-35268.0	NM_001033192	97863.0	Mm.275934	NM_001033192	ENSMUSG00000069237	Fam8a1	C78339	family with sequence similarity 8, member A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75630884-4	chr11	75630792	75630992	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008916)	promoter-TSS (NM_008916)	-128.0	NM_008916	19062.0	Mm.1458	NM_008916	ENSMUSG00000006127	Inpp5k	C62|Pps|SKIP	inositol polyphosphate 5-phosphatase K	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4003791-1	chr19	4003691	4003891	+	543.0	f1_c57bl6.idr	exon (NM_021791, exon 2 of 11)	exon (NM_021791, exon 2 of 11)	406.0	NM_021791	60425.0	Mm.266972	NM_021791	ENSMUSG00000024871	Doc2g	D830013O18Rik	double C2, gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-60663208-4	chr19	60663107	60663307	+	958.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB7|LINE|L1	-82184.0	NM_001172096	78832.0	Mm.259026	NM_030197	ENSMUSG00000033417	Cacul1	2700078E11Rik|2810417M16Rik|9830127L17Rik|AI450346|D130033C15Rik	CDK2 associated, cullin domain 1	protein-coding	1.4409971465007	1.9788492728833	1.74965614465439	2.29966900205108	1.26120824434179	3.02357673005241	1.09545207857607	1.8568519073118	0.408509795546692	0.707620723433747	0.998431161219273
Merged-chr2-48270512-4	chr2	48270413	48270613	+	986.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-543596.0	NM_007396	11480.0	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-60391241-4	chr10	60391225	60391425	+	907.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252635, intron 30 of 68)	intron (NM_001252635, intron 30 of 68)	-8401.0	NM_001164374	100302688.0	Mm.444135	NM_001164374	ENSMUSG00000090439	Gm17455	-	predicted gene, 17455	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-119893176-4	chr1	119893086	119893286	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER30|DNA|hAT-Charlie	19982.0	NM_175106	66343.0	Mm.49942	NM_175106	ENSMUSG00000036975	Tmem177	2300008B03Rik	transmembrane protein 177	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-108307424-4	chr6	108307308	108307508	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 4 of 61)	intron (NM_010585, intron 4 of 61)	94312.0	NM_010585	16438.0	Mm.227912	NM_010585	ENSMUSG00000030102	Itpr1	D6Pas2|Gm10429|IP3R 1|IP3R1|InsP3R|Ip3r|Itpr-1|P400|Pcp-1|Pcp1|insP3R1|opt|wblo	inositol 1,4,5-trisphosphate receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-30873701-4	chr16	30873599	30873799	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	207733.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-23833235-2	chr13	23833135	23833335	+	700.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6199.0	NM_001164743	105355.0	Mm.27038	NM_134069	ENSMUSG00000036083	Slc17a3	AW261723|Npt4	solute carrier family 17 (sodium phosphate), member 3	protein-coding	3.26360782084134	2.4041554255215	3.28950803160336	2.09675963969898	2.60844408447855	1.82080332083582	3.09805936063115	2.10783480546547	-0.697689221598754	0.387039121941606	0.876517644221684
Merged-chr8-108911045-4	chr8	108910957	108911157	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007496, intron 4 of 9)	intron (NM_007496, intron 4 of 9)	-25803.0	NR_037295	100526511.0		NR_037295	ENSMUSG00000093241	Mir3108	mir-3108|mmu-mir-3108	microRNA 3108	ncRNA	5.7903709353715	5.60305836626613	5.610734015309	5.90598227361369	5.6998788734343	5.5762400051346	5.64760104082633	6.07688614565972	0.0342692019535741	0.891494295322988	0.998431161219273
Merged-chr4-16082373-4	chr4	16082302	16082502	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10B|LTR|ERVL	-68514.0	NM_145950	209212.0	Mm.46455	NM_145950	ENSMUSG00000041153	Osgin2	BC010311|C230027H09Rik	oxidative stress induced growth inhibitor family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-19511154-2	chr18	19511054	19511254	+	750.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6C|LTR|ERVK	490943.0	NM_007882	13507.0	Mm.89935	NM_007882	ENSMUSG00000059898	Dsc3	5430426I24Rik	desmocollin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101078360-2	chr15	101078260	101078460	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-23961.0	NM_001214911	668225.0	Mm.385011	NM_001214911	ENSMUSG00000095440	Fignl2	EG668225	fidgetin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-119802072-2	chr8	119802019	119802219	+	601.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-23703.0	NM_028883	74347.0	Mm.358759	NM_028883	ENSMUSG00000034105	Tldc1	4632415K11Rik|Kiaa1609	TBC/LysM associated domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59056655-4	chr15	59056551	59056751	+	854.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144800, intron 2 of 14)	intron (NM_144800, intron 2 of 14)	25375.0	NM_001146180	211401.0	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55227283-4	chr19	55227165	55227365	+	981.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081076, intron 8 of 20)	intron (NM_001081076, intron 8 of 20)	13971.0	NM_001081076	73707.0	Mm.489987	NM_001081076	ENSMUSG00000055523	Gucy2g	2410077I05Rik|GC-G	guanylate cyclase 2g	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-83725051-2	chr15	83724951	83725151	+	649.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271472)	promoter-TSS (NM_001271472)	-12.0	NM_022723	64706.0	Mm.40393	NM_022723	ENSMUSG00000016763	Scube1	7330410C13Rik|A630023E24Rik	signal peptide, CUB domain, EGF-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-94385848-2	chr11	94385748	94385948	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029600, intron 1 of 30)	intron (NM_029600, intron 1 of 30)	7128.0	NM_029600	76408.0	Mm.23942	NM_029600	ENSMUSG00000020865	Abcc3	1700019L09Rik|ABC31|MLP2|MOAT-D|MRP3	ATP-binding cassette, sub-family C (CFTR/MRP), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-60492427-4	chr9	60492315	60492515	+	977.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040426, intron 2 of 17)	CT-rich|Low_complexity|Low_complexity	18620.0	NM_001040426	207596.0	Mm.28791	NM_172444	ENSMUSG00000032289	Thsd4	ADAMTSL-6|ADAMTSL6|AI585901|Adamtsl4|B230114P05Rik	thrombospondin, type I, domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-6279281-1	chr2	6279181	6279381	+	609.0	f0_balb.idr	intron (NR_040333, intron 3 of 6)	intron (NR_040333, intron 3 of 6)	-43476.0	NM_001080548	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	0.66385149323939	0.736781045465782	0.980168621850232	0.695702708542478	0.900830060029868	1.88390244532741	1.8043217747418	2.49687804380355	4.65335657078882	0.00160385455775396	0.0285505148129554
Merged-chr13-56132013-2	chr13	56131913	56132113	+	651.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159513, intron 1 of 8)	intron (NM_001159513, intron 1 of 8)	3537.0	NM_012015	26914.0	Mm.283802	NM_012015	ENSMUSG00000015937	H2afy	H2AF12M|mH2a1|macroH2A1	H2A histone family, member Y	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124993014-3	chr6	124992943	124993143	+	697.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3677.0	NM_175696	319352.0	Mm.295327	NM_175696	ENSMUSG00000030329	Pianp	AI255183|AU067746|C530028O21Rik|Panp	PILR alpha associated neural protein	protein-coding	1.11418613798244	2.02646913215058	1.21627733696801	0.776132456138006	1.12403082154497	2.04457713960049	1.22678763651546	0.778644227487974	0.0399188101840367	0.976184421700747	0.998431161219273
Merged-chr12-16904100-3	chr12	16903999	16904199	+	886.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009072, intron 1 of 32)	ORR1D2|LTR|ERVL-MaLR	9121.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-35103693-3	chr9	35103568	35103768	+	564.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009178, intron 1 of 10)	intron (NM_009178, intron 1 of 10)	-13060.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128124158-4	chr2	128124043	128124243	+	924.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_028765)	TTS (NM_028765)	-1895.0	NM_207681	12125.0	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-37875104-1	chr18	37875004	37875204	+	658.0	f1_balb.idr	intron (NM_007858, intron 16 of 26)	intron (NM_007858, intron 16 of 26)	-20444.0	NR_105945	102465592.0		NR_105945	ENSMUSG00000098706	Mir6979	Gm27524|mmu-mir-6979	microRNA 6979	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-16101580-4	chr4	16101522	16101722	+	846.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	62021.0	NM_138952	192656.0	Mm.112765	NM_138952	ENSMUSG00000041135	Ripk2	2210420D18Rik|CARD3|CARDIAK|CCK|D4Bwg0615e|RICK|RIP2	receptor (TNFRSF)-interacting serine-threonine kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-61721844-2	chr11	61721744	61721944	+	832.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A1|LTR|ERVL-MaLR	-1045.0	NM_001033227	109342.0	Mm.441070	NM_001033227	ENSMUSG00000042371	Slc5a10	C330021F16Rik|SGLT5	solute carrier family 5 (sodium/glucose cotransporter), member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-151866218-2	chr4	151866118	151866318	+	583.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TCTG)n|Simple_repeat|Simple_repeat	-4450.0	NM_001195565	100072.0	Mm.318846	NM_001081557	ENSMUSG00000014592	Camta1	1810059M14Rik|2310058O09Rik|AI316882|AW987475|mKIAA0833	calmodulin binding transcription activator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-123512988-2	chr4	123512888	123513088	+	558.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001199136, exon 7 of 98)	exon (NM_001199136, exon 7 of 98)	-101077.0	NM_001167918	442834.0	Mm.483803	NM_001167918		D830031N03Rik	Kiaa0754|mKIAA0754	RIKEN cDNA D830031N03 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-38385862-2	chr15	38385762	38385962	+	691.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-85151.0	NM_001289471	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89374332-2	chr3	89374232	89374432	+	701.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur2|SINE|Alu	-9079.0	NM_029974	77772.0	Mm.164013	NM_029974	ENSMUSG00000042672	Dcst1	A330106H01Rik	DC-STAMP domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-64792318-2	chr17	64792218	64792418	+	697.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	25207.0	NR_105051	101202683.0	Mm.393309	NR_105051		Dreh	-	down-regulated in hepatocellular carcinoma	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115336909-4	chr5	115336780	115336980	+	909.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029645, intron 1 of 2)	B1_Mus1|SINE|Alu	4281.0	NM_029645	384281.0	Mm.229308	NM_029645	ENSMUSG00000029536	Gatc	2010003O18Rik	glutamyl-tRNA(Gln) amidotransferase, subunit C	protein-coding	0.0897536039201439	0.430476791208945	0.261405137121106	0.374380755084057	0.223707152852874	0.105403259364572	0.265851451732277	0.593403243633267	0.152236429337316	0.934817411336772	1
Merged-chr10-117436926-3	chr10	117436853	117437053	+	671.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10482.0	NR_152734	102634600.0	Mm.399106	NR_152734	ENSMUSG00000112344	Gm32141	-	predicted gene, 32141	ncRNA	2.75901296306056	2.87161112015804	3.19313111207756	3.80547309512149	2.96623973755362	1.97483300696977	2.50888357717748	3.82358328372776	-0.350452311943147	0.626377612097332	0.980912176761026
Merged-chr12-54656630-4	chr12	54656512	54656712	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134054)	promoter-TSS (NM_134054)	-40.0	NM_134054	104725.0	Mm.485026	NM_134054	ENSMUSG00000044408	Sptssa	1110002B05Rik|AA407909|AA409588|AU041967|Ssspta	serine palmitoyltransferase, small subunit A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-73435126-1	chr16	73435026	73435226	+	601.0	f0_balb.idr	Intergenic	RSINE1|SINE|B4	771977.0	NM_019413	19876.0	Mm.310772	NM_019413	ENSMUSG00000022883	Robo1	AW494633|AW742721|DUTT1|Gm310	roundabout guidance receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-72230825-3	chr1	72230718	72230918	+	638.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13175.0	NR_155355	320933.0	Mm.440953	NR_155355		D230017M19Rik	B930094L07Rik	RIKEN cDNA D230017M19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91475910-3	chr2	91475816	91476016	+	842.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172668, intron 8 of 37)	intron (NM_172668, intron 8 of 37)	18385.0	NM_001145857	228357.0	Mm.275149	NM_172668	ENSMUSG00000027253	Lrp4	6430526J12Rik|D230026E03|Megf7|mdig	low density lipoprotein receptor-related protein 4	protein-coding	-0.413270832553205	0.248879758316469	-0.403519686790488	-0.4071766335812	-0.41236239857827	0.260274020124072	-0.402476173372258	-0.406537021983025	0.0394809277679939	0.98817139586833	1
Merged-chr10-53928104-4	chr10	53928018	53928218	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008548, intron 8 of 12)	intron (NM_008548, intron 8 of 12)	147678.0	NM_008548	17155.0	Mm.117294	NM_008548	ENSMUSG00000003746	Man1a	Man1a1|PCR1	mannosidase 1, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-122681428-1	chr2	122681328	122681528	+	541.0	f1_c57bl6.idr	3' UTR (NM_001290993, exon 6 of 6)	3' UTR (NM_001290993, exon 6 of 6)	21235.0	NM_011774	22785.0	Mm.27801	NM_011774	ENSMUSG00000005802	Slc30a4	Znt4|lm|znT-4	solute carrier family 30 (zinc transporter), member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-110608966-4	chr12	110608897	110609097	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030238, intron 1 of 76)	intron (NM_030238, intron 1 of 76)	7602.0	NM_030238	13424.0	Mm.181430	NM_030238	ENSMUSG00000018707	Dync1h1	9930018I23Rik|AI894280|DHC1|DHC1a|DNCL|Dnchc1|Dnec1|Dnecl|Loa|MAP1C|P22|Swl|mKIAA0325	dynein cytoplasmic 1 heavy chain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124957530-4	chr6	124957415	124957615	+	970.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001164089)	TTS (NM_001164089)	8023.0	NM_012003	26894.0	Mm.244536	NM_012003	ENSMUSG00000030127	Cops7a	D6Ertd35e|SGN7a	COP9 signalosome subunit 7A	protein-coding	1.94988677217903	1.55442041375654	0.7630870242055	0.749150189226439	1.90226586101627	1.5684141375678	0.767011799099329	0.751608861416308	-0.0470642918292469	0.975266476958429	0.998431161219273
Merged-chr13-103897800-4	chr13	103897696	103897896	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005868, intron 1 of 26)	intron (NM_001005868, intron 1 of 26)	22790.0	NM_001289473	59079.0	Mm.277354	NM_021563	ENSMUSG00000021709	Erbin	1700028E05Rik|Erbb2ip|mKIAA1225	Erbb2 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-66349886-3	chr9	66349778	66349978	+	886.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145617)	promoter-TSS (NM_145617)	-572.0	NM_145617	235439.0	Mm.244179	NM_145617	ENSMUSG00000038664	Herc1	2810449H11Rik|B230218H07|D130015N03Rik|tbl	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-32638374-3	chr12	32638273	32638473	+	836.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-181962.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-58535720-2	chr18	58535621	58535821	+	660.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20519.0	NM_001081072	225579.0	Mm.258517	NM_001081072	ENSMUSG00000024600	Slc27a6	4732438L20Rik|FACVL2|FATP6|VLCS-H1	solute carrier family 27 (fatty acid transporter), member 6	protein-coding	0.452364506131677	0.515870055236302	0.49599022359435	1.71548856700948	0.456592860168038	1.40317061447803	2.26423187442698	0.482887007941534	1.39837182515584	0.67024503508709	0.99359666617512
Merged-chr5-118473723-3	chr5	118473626	118473826	+	677.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-86993.0	NM_001347445	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-22141077-4	chr10	22141028	22141228	+	771.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001254744, intron 1 of 1)	MuRRS-int|LTR|ERV1	8142.0	NM_001254744	319887.0	Mm.177746	NM_001254744	ENSMUSG00000097327	E030030I06Rik	-	RIKEN cDNA E030030I06 gene	protein-coding	4.51209865821527	3.87627224260604	3.82602742355159	4.110750196634	3.99508598702655	4.20325795854179	3.93115593896155	4.51650055852341	0.0823960984221331	0.849705642128204	0.998431161219273
Merged-chr8-105439030-2	chr8	105438930	105439130	+	672.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033371, intron 2 of 10)	B3|SINE|B2	11390.0	NM_001170789	270091.0	Mm.212709	NM_001033371	ENSMUSG00000054320	Lrrc36	BC036564	leucine rich repeat containing 36	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-35689010-4	chr5	35688866	35689066	+	971.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-9186.0	NM_030127	78558.0	Mm.274255	NM_030127	ENSMUSG00000029096	Htra3	2210021K23Rik|9530081K03Rik|Prsp|Tasp	HtrA serine peptidase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128706981-1	chr2	128706881	128707081	+	565.0	f1_balb.idr	intron (NM_008587, intron 1 of 18)	MERVL_2A-int|LTR|ERVL	8066.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-21894873-3	chr19	21894739	21894939	+	767.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4_|SINE|ID	116499.0	NM_031997	83921.0	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-122586453-2	chr2	122586353	122586553	+	632.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24824.0	NM_025961	67092.0	Mm.29975	NM_025961	ENSMUSG00000027199	Gatm	1810003P21Rik|AI314789|AT	glycine amidinotransferase (L-arginine:glycine amidinotransferase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-117872341-4	chr5	117872258	117872458	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008712, intron 1 of 27)	intron (NM_008712, intron 1 of 27)	5519.0	NM_008712	18125.0	Mm.44249	NM_008712	ENSMUSG00000029361	Nos1	2310005C01Rik|N-NOS|NC-NOS|NO|NOS|NOS-I|Nos-1|bNOS|nNOS	nitric oxide synthase 1, neuronal	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-33772140-3	chr17	33772039	33772239	+	792.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	9436.0	NM_020581	57875.0	Mm.196189	NM_020581	ENSMUSG00000002289	Angptl4	Arp4|Bk89|Fiaf|Hfarp|Ng27|Pgar|Pgarg|Pp1158	angiopoietin-like 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-108576244-2	chr8	108576144	108576344	+	608.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_077224, intron 1 of 1)	intron (NR_077224, intron 1 of 1)	8433.0	NR_077224	109215.0	Mm.65282	NR_077224	ENSMUSG00000110613	Lncbate1	3010033K07Rik|Lnc-BATE1	brown adipose tissue enriched long non-coding RNA 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-74674584-3	chr15	74674502	74674702	+	789.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2032.0	NM_018790	11838.0	Mm.491310	NM_018790	ENSMUSG00000022602	Arc	Arc3.1|C86064|arg3.1|mArc	activity regulated cytoskeletal-associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-7020880-2	chr19	7020780	7020980	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_016737, exon 14 of 14)	3' UTR (NM_016737, exon 14 of 14)	-1411.0	NM_001362399	108101.0	Mm.157591	NM_153795	ENSMUSG00000024965	Fermt3	C79673|Kindlin3	fermitin family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91838928-2	chr16	91838828	91839028	+	992.8000490000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110275, intron 17 of 28)	B3|SINE|B2	92702.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-34716699-3	chr6	34716604	34716804	+	903.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145575, intron 1 of 11)	intron (NM_145575, intron 1 of 11)	7260.0	NM_145575	109624.0	Mm.308134	NM_145575	ENSMUSG00000029761	Cald1	4833423D12Rik|AI195384|AV071549|AW536160|C920027I18Rik	caldesmon 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-57504009-3	chr9	57503935	57504135	+	872.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133982)	promoter-TSS (NM_133982)	-67.0	NM_133982	102614.0	Mm.274421	NM_133982	ENSMUSG00000062309	Rpp25	AI851155	ribonuclease P/MRP 25 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32607846-4	chr2	32607749	32607949	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025310, intron 1 of 5)	intron (NM_001025310, intron 1 of 5)	864.0	NR_110347	50935.0	Mm.88831	NM_016973	ENSMUSG00000026811	St6galnac6	ST6GalNAcVI|Siat7f	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-37236696-2	chr10	37236596	37236796	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-97770.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80673562-2	chr10	80673462	80673662	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021462, intron 2 of 13)	intron (NM_021462, intron 2 of 13)	2731.0	NM_021462	17347.0	Mm.42126	NM_021462	ENSMUSG00000020190	Mknk2	2010016G11Rik|Gprk7|Mnk2	MAP kinase-interacting serine/threonine kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-66907181-2	chr9	66907081	66907281	+	973.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	12524.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-54057129-3	chr13	54057036	54057236	+	647.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1478.0	NM_010076	13488.0	Mm.54161	NM_010076	ENSMUSG00000021478	Drd1	C030036C15Rik|Drd-1|Drd1a|Gpcr15	dopamine receptor D1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-57745305-4	chr18	57745205	57745405	+	880.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34690.0	NR_152224	100503033.0	Mm.381112	NR_152224		Gm19519	-	predicted gene, 19519	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-9119856-2	chr4	9119756	9119956	+	678.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-149437.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-57535857-3	chr16	57535738	57535938	+	881.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 4 of 4)	intron (NM_001040397, intron 4 of 4)	-13404.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81143607-2	chr10	81143507	81143707	+	865.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010731, intron 1 of 2)	intron (NM_010731, intron 1 of 2)	7336.0	NM_010731	16969.0	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-127975774-4	chr1	127975662	127975862	+	991.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285945, intron 13 of 20)	intron (NM_001285945, intron 13 of 20)	106989.0	NM_178690	226407.0	Mm.489713	NM_178690	ENSMUSG00000036104	Rab3gap1	1700003B17Rik|4732493F09Rik|AL117896|Rab3gap|p130	RAB3 GTPase activating protein subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167782564-2	chr2	167782464	167782664	+	685.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	91387.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-164458539-4	chr2	164458439	164458639	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-2432.0	NM_025575	66460.0	Mm.44218	NM_025575	ENSMUSG00000045503	Sys1	2610042O14Rik|AI266964|C87389	SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-179546308-4	chr1	179546166	179546366	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146105)	promoter-TSS (NM_146105)	10.0	NM_001331054	15278.0	Mm.293529	NM_008249	ENSMUSG00000026492	Tfb2m	Hkp1	transcription factor B2, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-115817269-1	chr10	115817169	115817369	+	1000.0	f1_balb.idr	promoter-TSS (NM_146010)	promoter-TSS (NM_146010)	-15.0	NM_001168680	216350.0	Mm.22270	NM_146010	ENSMUSG00000034127	Tspan8	C76990|E330007O21Rik|Tm4sf3	tetraspanin 8	protein-coding	-1.43172712806865	-1.3992492906874	-1.40907085678131	-1.41713858359971	-0.932192548427885	-1.39712091634321	-1.40684746950024	-1.41569446435649	2.19283191591698	0.528233640655333	1
Merged-chr1-173580064-3	chr1	173579954	173580154	+	906.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPEY3-int|LTR|ERVK	19220.0	NM_001177349	623121.0	Mm.138449	NM_001033384	ENSMUSG00000073491	Ifi213	E030037K03Rik|E430029J22Rik|Pydc4|Pyr-A	interferon activated gene 213	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133633150-2	chr4	133633050	133633250	+	788.833374	f1_balb.idr|f1_c57bl6.idr	exon (NM_001017968, exon 1 of 8)	exon (NM_001017968, exon 1 of 8)	279.0	NM_001017968	503610.0	Mm.331948	NM_001017968	ENSMUSG00000037553	Zdhhc18	-	zinc finger, DHHC domain containing 18	protein-coding	-0.222122635403787	-0.206158465928485	0.579651640297355	-0.215404950013321	-0.0668511024148993	0.317095103254683	-0.210220550511672	-0.214699648548079	-0.510952273320566	0.829094475276757	1
Merged-chr4-126883748-4	chr4	126883636	126883836	+	941.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114399, intron 23 of 29)	intron (NM_001114399, intron 23 of 29)	84187.0	NM_001357201	67785.0	Mm.165401	NM_001114399	ENSMUSG00000042446	Zmym4	6330503C17Rik|AI480785|AW493829|CDIR|D630001M21|MYM|Zfp262|Znf262|mKIAA0425	zinc finger, MYM-type 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-146177931-4	chr3	146177853	146178053	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005846, intron 7 of 13)	intron (NM_001005846, intron 7 of 13)	27779.0	NM_001005846	68279.0	Mm.116862	NM_026656	ENSMUSG00000011008	Mcoln2	3300002C04Rik|AI549968|C86638|TRPML2	mucolipin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-30814614-4	chr5	30814515	30814715	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133350)	promoter-TSS (NM_133350)	-26.0	NM_133350	100732.0	Mm.332295	NM_133350	ENSMUSG00000029166	Mapre3	AI790651|EB2|EB3|EBF3|RP3	microtubule-associated protein, RP/EB family, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-84152099-2	chr12	84151999	84152199	+	552.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001163502, exon 13 of 13)	3' UTR (NM_001163502, exon 13 of 13)	-3610.0	NM_027438	70481.0	Mm.444348	NM_027438	ENSMUSG00000054383	Pnma1	5730402C15Rik	paraneoplastic antigen MA1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-17257608-4	chr11	17257492	17257692	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001330649)	promoter-TSS (NM_001330649)	45.0	NM_020558	57316.0	Mm.287982	NM_020558	ENSMUSG00000000581	C1d	1110036E10Rik|AI875855|SUN-CoR	C1D nuclear receptor co-repressor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-134193799-2	chr5	134193699	134193899	+	876.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359852, intron 3 of 14)	intron (NM_001359852, intron 3 of 14)	9761.0	NM_053266	114674.0	Mm.218744	NM_053266	ENSMUSG00000015942	Gtf2ird2	1700012P16Rik	GTF2I repeat domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91843768-2	chr16	91843668	91843868	+	724.8000490000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110275, intron 19 of 28)	intron (NM_001110275, intron 19 of 28)	87862.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-84023272-4	chr12	84023181	84023381	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28B|LTR|ERVL	13779.0	NM_012006	26897.0	Mm.1978	NM_012006	ENSMUSG00000072949	Acot1	ACH2|CTE-1|CTE-I|Cte1|D12Ucla1	acyl-CoA thioesterase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-115555654-4	chr8	115555551	115555751	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	151243.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-38403250-2	chr16	38403150	38403350	+	727.700012	f1_balb.idr|f1_c57bl6.idr	intron (NM_134102, intron 8 of 10)	RMER4B|LTR|ERVK	29895.0	NM_134102	85031.0	Mm.279805	NM_134102	ENSMUSG00000002847	Pla1a	AA986889|Ps-pla1|Pspla1	phospholipase A1 member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-78849767-4	chr14	78849693	78849893	+	952.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027906, intron 1 of 44)	intron (NM_027906, intron 1 of 44)	615.0	NM_173758	219189.0	Mm.159651	NM_027906	ENSMUSG00000058997	Vwa8	1300010F03Rik|4932416F07Rik|AI957255|Kiaa0564|mKIAA0564	von Willebrand factor A domain containing 8	protein-coding	-1.23826193677681	-1.21241040182355	-1.22270105026776	-0.934241458926562	-1.23783648736863	-1.21018037537722	-1.22037147302458	-0.929982742503718	0.0323590357436516	0.9924297640193	1
Merged-chr11-32562515-2	chr11	32562415	32562615	+	863.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 2 of 18)	intron (NM_009288, intron 2 of 18)	29249.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	0.681968415234257	0.395322661279542	1.35075675418242	0.37690770267354	0.690092743922201	0.397630437037527	1.3668939835832	0.378326875775424	0.0411272926488172	0.981537550259133	0.998431161219273
Merged-chr11-68477450-2	chr11	68477350	68477550	+	732.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_177320, exon 5 of 19)	exon (NM_177320, exon 5 of 19)	-25569.0	NM_001004435	104709.0	Mm.234573	NM_001004435	ENSMUSG00000046207	Pik3r6	BB220380|p84|p84 PIKAP|p87(PIKAP)|p87PIKAP	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-34321090-2	chr16	34320990	34321190	+	618.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177357, intron 6 of 59)	intron (NM_177357, intron 6 of 59)	192937.0	NM_001164268	545156.0	Mm.82274	NM_177357	ENSMUSG00000061751	Kalrn	2210407G14Rik|AV235988|DUET|E530005C20Rik|Gm539|Hapip|TRAD	kalirin, RhoGEF kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-61132161-4	chr18	61132046	61132246	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_178277, exon 20 of 20)	exon (NM_178277, exon 20 of 20)	14678.0	NR_105949	102466212.0		NR_105949	ENSMUSG00000098389	Mir6983	Gm27496|mmu-mir-6983	microRNA 6983	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-109751890-2	chr8	109751790	109751990	+	710.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14151.0	NM_001080930	52335.0	Mm.276770	NM_001080930	ENSMUSG00000069895	Atxn1l	AW558552|Boat|C330011L24Rik|D6Mgi37|D8Ertd587e	ataxin 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46073864-2	chr19	46073764	46073964	+	583.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001081214)	TTS (NM_001081214)	-1983.0	NM_001039352	70769.0	Mm.402190	NM_053086	ENSMUSG00000015176	Nolc1	NOPP130|NOPP140|P130	nucleolar and coiled-body phosphoprotein 1	protein-coding	-1.52696403314699	-1.49523967873556	-1.5048333853602	-1.51271394162622	-1.52473704212565	-1.49316068248889	-1.50266158046844	-1.06847079017215	2.01069003169785	0.564432837776867	1
Merged-chr12-98957850-1	chr12	98957750	98957950	+	549.0	f1_c57bl6.idr	intron (NM_198311, intron 8 of 14)	intron (NM_198311, intron 8 of 14)	37238.0	NM_198311	76260.0	Mm.282660	NM_029553	ENSMUSG00000021013	Ttc8	0610012F22Rik|AV001447|BBS8	tetratricopeptide repeat domain 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-70843274-2	chr6	70843174	70843374	+	662.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1241.0	NM_010121	13666.0	Mm.247167	NM_010121	ENSMUSG00000031668	Eif2ak3	Pek|Perk	eukaryotic translation initiation factor 2 alpha kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-79093403-2	chr12	79093303	79093503	+	751.833374	f1_balb.idr|f1_c57bl6.idr	intron (NR_110486, intron 2 of 2)	L2|LINE|L2	-3733.0	NM_029988	110417.0	Mm.268317	NM_029988	ENSMUSG00000021120	Pigh	2210416H01Rik|A930028P05Rik	phosphatidylinositol glycan anchor biosynthesis, class H	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-105567401-4	chr11	105567271	105567471	+	892.525024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22615.0	NM_181071	77097.0	Mm.22501	NM_175492	ENSMUSG00000053580	Tanc2	3526402J09Rik|5730590C14Rik	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-94616917-2	chr3	94616817	94617017	+	741.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001293728, intron 8 of 11)	intron (NM_001293728, intron 8 of 11)	-34201.0	NM_029721	76742.0	Mm.28160	NM_029721	ENSMUSG00000028136	Snx27	5730552M22Rik|ESTM45|ESTM47|R75405	sorting nexin family member 27	protein-coding	0.00720325830884855	-0.418961923520245	-0.120248800028184	-0.424968547325859	-0.0754789368537887	-0.418192950454723	-0.421612774977877	-0.424513837624914	-1.06140600571653	0.683277466257509	1
Merged-chr2-170132862-2	chr2	170132762	170132962	+	794.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159683, intron 1 of 6)	intron (NM_001159683, intron 1 of 6)	-1642.0	NM_001033299	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-14824655-3	chr8	14824559	14824759	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172910, intron 11 of 15)	intron (NM_172910, intron 11 of 15)	-63877.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	4.81843738451946	3.45468858638699	4.08120661681146	4.12931820059193	3.1790115709879	2.81678371962807	3.45944644857829	3.14771077482048	-1.52291221190297	0.00428411360456027	0.0592175057920669
Merged-chr9-57074419-2	chr9	57074319	57074519	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_152107)	TTS (NR_152107)	1630.0	NR_152107	72588.0	Mm.70350	NR_152107		2700012I20Rik	-	RIKEN cDNA 2700012I20 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-55498116-4	chr11	55497982	55498182	+	813.395813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013716, intron 10 of 11)	intron (NM_013716, intron 10 of 11)	-3144.0	NR_106112	102465760.0		NR_106112	ENSMUSG00000098906	Mir7652	Gm27932|mmu-mir-7652	microRNA 7652	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123860604-3	chr5	123860506	123860706	+	819.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	X7A_LINE|LINE|CR1	4910.0	NM_030701	80885.0	Mm.440567	NM_030701	ENSMUSG00000045502	Hcar2	Gpr109a|Gpr109b|HM74|Niacr1|PUMA-G|Pumag|mHM74b	hydroxycarboxylic acid receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-118646482-4	chr7	118646388	118646588	+	761.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028930, intron 5 of 17)	ORR1G|LTR|ERVL-MaLR	12752.0	NM_028930	74424.0	Mm.11068	NM_028930	ENSMUSG00000030650	Tmc5	4932443L08Rik|AU016085	transmembrane channel-like gene family 5	protein-coding	1.76987836856705	2.29109797329255	0.989866144861119	1.76904070293347	1.57652618373646	1.01392366990914	1.22621495748144	1.77893686074638	-1.09559283642831	0.366795699376575	0.861862339647405
Merged-chr12-80326150-4	chr12	80326058	80326258	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	65519.0	NR_037207	100526530.0		NR_037207	ENSMUSG00000105972	Mir1843a	Mir1843|mir-1843a|mmu-mir-1843|mmu-mir-1843a	microRNA 1843a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-60941446-4	chr1	60941347	60941547	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32422.0	NM_001281976	12477.0	Mm.390	NM_009843	ENSMUSG00000026011	Ctla4	Cd152|Ctla-4|Ly-56	cytotoxic T-lymphocyte-associated protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6270040-4	chr19	6269938	6270138	+	925.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D11|SINE|Alu	5194.0	NR_029720	387187.0		NR_029720	ENSMUSG00000065523	Mir192	Mirn192|mir-192|mmu-mir-192	microRNA 192	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-71882684-2	chr2	71882601	71882801	+	596.0	f0_c57.idr|f1_c57bl6.idr	intron (NM_001360002, intron 3 of 10)	T-rich|Low_complexity|Low_complexity	7797.0	NM_001360002	228026.0	Mm.34411	NM_172665	ENSMUSG00000006494	Pdk1	B830012B01|D530020C15Rik	pyruvate dehydrogenase kinase, isoenzyme 1	protein-coding	2.63836125016082	2.48284340265405	3.47129148828357	0.876227859086189	1.10742382373102	0.95606967133086	1.48511685204501	0.881962447718314	-3.96679062279272	0.00161774962789438	0.0287126627743739
Merged-chr8-46763693-1	chr8	46763593	46763793	+	560.0	f0_balb.idr	intron (NR_152560, intron 1 of 7)	intron (NR_152560, intron 1 of 7)	23948.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-34367544-2	chr6	34367444	34367644	+	723.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008012, intron 9 of 9)	intron (NM_008012, intron 9 of 9)	13398.0	NM_008012	14187.0	Mm.5378	NM_008012	ENSMUSG00000029762	Akr1b8	FR-1|Fgfrp|Fgrp	aldo-keto reductase family 1, member B8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-59540803-3	chr9	59540756	59540956	+	809.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010421, intron 1 of 13)	ID_B1|SINE|B4	1316.0	NM_010421	15211.0	Mm.2284	NM_010421	ENSMUSG00000025232	Hexa	Hex-1	hexosaminidase A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-70078698-2	chr13	70078598	70078798	+	605.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_131156, intron 2 of 2)	intron (NR_131156, intron 2 of 2)	-50350.0	NR_045965	74280.0	Mm.273343	NR_045965	ENSMUSG00000099639	1700084F23Rik	1700003E18Rik|4930589D02Rik	RIKEN cDNA 1700084F23 gene	ncRNA	-2.18292257394068	-2.15545247547656	-2.03304972317742	-2.17058342868585	-2.18099422382073	-2.1536522739386	-2.16187909550322	-2.16936197735154	-0.683654500252594	0.846597994014493	1
Merged-chr6-28490263-2	chr6	28490163	28490363	+	713.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019776, intron 1 of 23)	B3A|SINE|B2	9915.0	NM_019776	56463.0	Mm.439987	NM_019776	ENSMUSG00000001424	Snd1	AL033314|Tudor-SN	staphylococcal nuclease and tudor domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-80008055-2	chr15	80007955	80008155	+	649.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011057, intron 1 of 6)	MIR3|SINE|MIR	6753.0	NM_011057	18591.0	Mm.144089	NM_011057	ENSMUSG00000000489	Pdgfb	PDGF-B|Sis	platelet derived growth factor, B polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-158462662-2	chr2	158462575	158462775	+	788.916687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291137, intron 20 of 30)	intron (NM_001291137, intron 20 of 30)	-39937.0	NM_145635	246747.0	Mm.28800	NM_145635	ENSMUSG00000044405	Adig	SMAF-1|Smaf1	adipogenin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115631675-4	chr11	115631582	115631782	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-3387.0	NM_001252395	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-120943885-2	chr9	120943785	120943985	+	748.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_007614, intron 1 of 14)	intron (NM_007614, intron 1 of 14)	10307.0	NM_001165902	12387.0	Mm.291928	NM_007614	ENSMUSG00000006932	Ctnnb1	Bfc|Catnb|Mesc	catenin (cadherin associated protein), beta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-104576323-1	chr9	104576223	104576423	+	747.0	f0_balb.idr	intron (NM_028719, intron 1 of 15)	intron (NM_028719, intron 1 of 15)	6840.0	NM_028719	74020.0	Mm.326240	NM_028719	ENSMUSG00000032564	Cpne4	3632411M23Rik|4933406O10Rik	copine IV	protein-coding	0.266788127620141	0.140358775200296	0.134230074429627	0.933085964817708	0.27115259616845	0.505472214057262	0.471197506896762	0.130322074127488	-0.490253008637879	0.797013973110552	1
Merged-chr11-121700912-2	chr11	121700812	121701012	+	559.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1515.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-176835831-7	chr1	176835741	176835941	+	848.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_037996, exon 1 of 1)	non-coding (NR_037996, exon 1 of 1)	292.0	NR_037996	15365.0	Mm.441435	NR_037996		Hmga2-ps1	EG666235|Gm7996|Hmgic-ps1|[y]i-c	high mobility group AT-hook 2, pseudogene 1	pseudo	2.75314553328993	2.76380416708692	3.42282024333219	2.18753507614481	2.48570229893037	2.90061450245279	2.56699802916036	2.91323262817084	-0.254877197940433	0.72244255932573	0.998431161219273
Merged-chr7-28818165-2	chr7	28818065	28818265	+	693.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_177301, intron 6 of 12)	intron (NM_177301, intron 6 of 12)	-7173.0	NM_016772	51798.0	Mm.291776	NM_016772	ENSMUSG00000053898	Ech1	AA617331	enoyl coenzyme A hydratase 1, peroxisomal	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-75288774-4	chr10	75288665	75288865	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153406, intron 13 of 15)	intron (NM_153406, intron 13 of 15)	-28112.0	NM_009630	11540.0	Mm.333734	NM_009630	ENSMUSG00000020178	Adora2a	A2AAR|A2aR|AA2AR	adenosine A2a receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-103694526-3	chr14	103694426	103694626	+	702.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045148, exon 3 of 3)	non-coding (NR_045148, exon 3 of 3)	4906.0	NR_045148	70898.0	Mm.27548	NR_045148	ENSMUSG00000089707	Slain1os	4921525B02Rik	SLAIN motif family, member 1, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81647208-1	chr15	81647108	81647308	+	654.0	f1_c57bl6.idr	intron (NM_177821, intron 29 of 30)	B3A|SINE|B2	-16681.0	NM_001289712	214669.0	Mm.280768	NM_145993	ENSMUSG00000022394	L3mbtl2	4732493N06Rik|M4mbt	L3MBTL2 polycomb repressive complex 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-66496426-2	chr8	66496326	66496526	+	786.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-9896.0	NM_001357208	66282.0	Mm.294985	NM_025465	ENSMUSG00000025591	Tma16	1810029B16Rik	translation machinery associated 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-88599454-3	chr11	88599351	88599551	+	872.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054043, intron 5 of 13)	intron (NM_054043, intron 5 of 13)	-19800.0	NR_131025	68397.0	Mm.426889	NR_131025		0610039H22Rik	-	RIKEN cDNA 0610039H22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119396204-4	chr11	119396101	119396301	+	948.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	5729.0	NR_035453	100316690.0		NR_035453	ENSMUSG00000088015	Mir1932	mir-1932|mmu-mir-1932	microRNA 1932	ncRNA	1.86071922292134	2.30830862368588	3.17615352459757	2.32250840465979	3.79572501035028	2.50221563253556	3.42478167142834	2.72594044897611	1.282859277599	0.0876542896523674	0.455271068073205
Merged-chr9-58580986-4	chr9	58580854	58581054	+	823.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1286.0	NM_001293673	20320.0	Mm.15125	NM_009145	ENSMUSG00000032336	Nptn	AW554172|SDR-1|Sdfr1	neuroplastin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-29821152-3	chr19	29821058	29821258	+	743.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8184.0	NM_177721	240614.0	Mm.125503	NM_177721	ENSMUSG00000074909	Ranbp6	C630001B19	RAN binding protein 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-15955076-1	chr7	15954976	15955176	+	551.0	f1_balb.idr	intron (NM_153068, intron 4 of 5)	intron (NM_153068, intron 4 of 5)	-8968.0	NM_133831	68077.0	Mm.277634	NM_133831	ENSMUSG00000041560	Nop53	5330430H08Rik|9430097C02Rik|AU041936|AW536441|Gltscr2|PICT-1|R74911	NOP53 ribosome biogenesis factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-59604305-4	chr16	59604185	59604385	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32660.0	NR_040564	75145.0	Mm.399348	NR_040564		4930547E14Rik	-	RIKEN cDNA 4930547E14 gene	ncRNA	6.11856681492655	6.44161488988832	6.22354468161269	5.84080913956479	5.08259510694425	5.14140527914475	6.03534341617369	6.17864507416229	-0.520568013726657	0.0726686651407335	0.406912870733597
Merged-chr6-137395851-2	chr6	137395751	137395951	+	567.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011216, intron 10 of 26)	intron (NM_011216, intron 10 of 26)	-14870.0	NM_001164402	19277.0	Mm.186361	NM_011216	ENSMUSG00000030223	Ptpro	D28|GLEPP1|PTPBK|PTPROt|PTPU2|PTPoc|PTPphi|Ptpn15|R-PTP-O	protein tyrosine phosphatase, receptor type, O	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-103557296-4	chr2	103557045	103557245	+	768.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9165.0	NM_178890	99382.0	Mm.35850	NM_178890	ENSMUSG00000032724	Abtb2	AW539457|BPOZ-2	ankyrin repeat and BTB (POZ) domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100943489-4	chr7	100943377	100943577	+	925.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183168, intron 1 of 2)	LTR108c_Mam|LTR|ERVL	-11316.0	NM_001081116	207212.0	Mm.29954	NM_001081116	ENSMUSG00000032875	Arhgef17	8030463K16|AI428794|AW558066|BC035332|mKIAA0337	Rho guanine nucleotide exchange factor (GEF) 17	protein-coding	3.92221285808625	4.19056875034681	4.7518637517375	3.94312679072033	3.48632349026171	4.28568722263211	4.52986478731078	4.35566907353777	-0.0403681839557816	0.928342281701015	0.998431161219273
Merged-chr17-75119652-4	chr17	75119547	75119747	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019919, intron 3 of 33)	intron (NM_019919, intron 3 of 33)	-59134.0	NM_001331236	268977.0	Mm.269747	NM_019919	ENSMUSG00000001870	Ltbp1	9430031G15Rik|9830146M04|Ltbp-1|Ltbp1L|TGF-beta1-BP-1|Tgfb|b2b1000Clo	latent transforming growth factor beta binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-48109304-1	chr4	48109204	48109404	+	821.0	f0_balb.idr	Intergenic	Intergenic	-15615.0	NM_026343	67727.0	Mm.171334	NM_026343	ENSMUSG00000061455	Stx17	4833418L03Rik|6330411F21Rik|9030425C21Rik|AW048351	syntaxin 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-5006772-4	chr6	5006654	5006854	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181595, intron 2 of 15)	intron (NM_181595, intron 2 of 15)	103434.0	NM_181595	243725.0	Mm.332901	NM_181595	ENSMUSG00000032827	Ppp1r9a	2810430P21Rik|4930518N04Rik|5330407E15|A230094E16Rik|BB181831|NRB|mKIAA1222|neurabin-I	protein phosphatase 1, regulatory (inhibitor) subunit 9A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-93262356-4	chr10	93262208	93262408	+	838.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001282967, intron 2 of 3)	intron (NM_001282967, intron 2 of 3)	48851.0	NM_001322268	13713.0	Mm.4454	NM_013508	ENSMUSG00000008398	Elk3	D430049E23Rik|Erp|Etrp|Net|Sap-2	ELK3, member of ETS oncogene family	protein-coding	-1.05602425698358	-1.03684877026278	-1.04804769749284	-0.636385453808002	-1.05555403824382	-1.03442191601459	-1.04551250584145	-0.750975328811224	-0.48266445766427	0.88250396657609	1
Merged-chr14-36957475-2	chr14	36957375	36957575	+	745.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_027045, intron 1 of 10)	MER21B|LTR|ERVL	11289.0	NM_027045	72972.0	Mm.27621	NM_027045	ENSMUSG00000058690	Ccser2	1700012P13Rik|2900054P12Rik|AI035535|AW108503|Fam190b|Gcap14	coiled-coil serine rich 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-37223934-4	chr6	37223849	37224049	+	981.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347104, intron 1 of 32)	intron (NM_001347104, intron 1 of 32)	76027.0	NM_001081206	320127.0	Mm.119469	NM_001081206	ENSMUSG00000038665	Dgki	6430604M11Rik|C130010K08Rik	diacylglycerol kinase, iota	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-120875853-2	chr10	120875720	120875920	+	909.9166869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_177092, intron 1 of 6)	intron (NM_177092, intron 1 of 6)	18191.0	NR_038023	100504616.0	Mm.451174	NR_038023	ENSMUSG00000087480	Gm15910	-	predicted gene 15910	ncRNA	1.08209506570979	0.258410491438668	0.865808770224301	0.926356414816938	0.235511246029074	0.260191090992423	0.252228612970021	0.245382905264616	-4.36883508364172	0.0265242217447445	1
Merged-chr5-90661026-2	chr5	90660926	90661126	+	720.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20499.0	NM_001310656	73246.0	Mm.30172	NM_028478	ENSMUSG00000029370	Rassf6	1600016B17Rik	Ras association (RalGDS/AF-6) domain family member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-44992694-2	chr2	44992594	44992794	+	763.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355291, intron 9 of 9)	intron (NM_001355291, intron 9 of 9)	30483.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-164837837-2	chr2	164837737	164837937	+	702.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038492, intron 11 of 14)	intron (NM_001038492, intron 11 of 14)	4064.0	NM_008906	19025.0	Mm.359633	NM_008906	ENSMUSG00000017760	Ctsa	AU019505|PPCA|Ppgb	cathepsin A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99159033-4	chr7	99158903	99159103	+	999.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026384, exon 5 of 8)	exon (NM_026384, exon 5 of 8)	-17859.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	5.08952142783106	3.72836845402335	4.85618082647862	4.35924685312801	4.08164897976507	4.17446809138119	3.71995357222705	4.22465977570288	-0.713789562950203	0.103142296520845	0.500067863816178
Merged-chr11-62744220-3	chr11	62744163	62744363	+	837.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15170.0	NM_133208	170740.0	Mm.339982	NM_133208	ENSMUSG00000005267	Zfp287	B230333C16Rik|SKAT-2|Skat2|Znf287|mszf16|mszf74	zinc finger protein 287	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-20724513-4	chr10	20724406	20724606	+	809.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013875, intron 1 of 12)	intron (NM_013875, intron 1 of 12)	572.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-61991321-2	chr15	61991221	61991421	+	652.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_010849)	TTS (NM_010849)	5980.0	NM_001177352	17869.0	Mm.2444	NM_010849	ENSMUSG00000022346	Myc	AU016757|Myc2|Niard|Nird|bHLHe39	myelocytomatosis oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111670516-2	chr12	111670416	111670616	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021273, intron 5 of 7)	intron (NM_021273, intron 5 of 7)	1822.0	NM_021273	12709.0	Mm.16831	NM_021273	ENSMUSG00000001270	Ckb	B-CK|Bck|CPK-B|Ck-3|Ck3|Ckbb	creatine kinase, brain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114813001-4	chr11	114813004	114813204	+	963.616699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14180.0	NM_181749	217302.0	Mm.269127	NM_181749	ENSMUSG00000034677	Gpr142	PGR2	G protein-coupled receptor 142	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-48715793-1	chr4	48715693	48715893	+	541.0	f1_c57bl6.idr	Intergenic	Intergenic	52279.0	NM_026509	68016.0	Mm.133444	NM_026509	ENSMUSG00000028348	Cavin4	2310039E09Rik|Murc	caveolae associated 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-14087319-2	chr14	14087219	14087419	+	551.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_139227, exon 5 of 12)	exon (NM_139227, exon 5 of 12)	33585.0	NM_025550	66413.0	Mm.27591	NM_025550	ENSMUSG00000021737	Psmd6	2400006A19Rik	proteasome (prosome, macropain) 26S subunit, non-ATPase, 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55234395-2	chr19	55234295	55234495	+	721.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081076, intron 3 of 20)	intron (NM_001081076, intron 3 of 20)	6841.0	NM_001081076	73707.0	Mm.489987	NM_001081076	ENSMUSG00000055523	Gucy2g	2410077I05Rik|GC-G	guanylate cyclase 2g	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-48488522-2	chr14	48488392	48488592	+	605.25	f0_balb.idr|f1_c57bl6.idr	intron (NR_132324, intron 9 of 13)	L1MA4|LINE|L1	42140.0	NR_132324	218989.0	Mm.85211	NM_172600	ENSMUSG00000036339	Tmem260	5930435P15|6720456H20Rik	transmembrane protein 260	protein-coding	1.44009561863789	3.09471028493173	3.0884790461524	2.79135366529645	3.03583947627283	3.64078871279297	2.64197395464236	3.91200261547666	1.09743881445396	0.137216450312857	0.577469500630244
Merged-chr6-112091118-6	chr6	112091054	112091254	+	954.0277710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-119554.0	NR_027865	67336.0	Mm.378014	NR_027865	ENSMUSG00000100219	1700054K19Rik	-	RIKEN cDNA 1700054K19 gene	ncRNA	2.80775748897181	3.22798498387934	2.21692138732532	2.15473504748872	2.97968398197851	2.75525552141743	3.2222694516844	2.16579986445649	0.301092173348001	0.688702471846203	0.996533206832645
Merged-chr3-40529091-4	chr3	40528984	40529184	+	909.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	-6172.0	NR_040445	100040882.0	Mm.272869	NR_040445	ENSMUSG00000037884	1700017G19Rik	-	RIKEN cDNA 1700017G19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133246346-1	chr4	133246246	133246446	+	720.0	f1_balb.idr	exon (NM_016693, exon 9 of 29)	exon (NM_016693, exon 9 of 29)	5528.0	NM_016693	53608.0	Mm.36640	NM_016693	ENSMUSG00000028862	Map3k6	Ask2|MAPKKK6|MEKK6	mitogen-activated protein kinase kinase kinase 6	protein-coding	-1.06932346315282	-1.04545378193536	-0.220844647149311	-1.06494782147003	-1.06867040657128	-1.04264807175102	-1.05547001227371	-1.06448932552894	-3.08190232315036	0.346744811462451	1
Merged-chr19-55840967-4	chr19	55840868	55841068	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_138565, intron 4 of 15)	intron (NR_138565, intron 4 of 15)	-54353.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89511090-3	chr3	89510961	89511161	+	792.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9103.0	NM_080466	140493.0	Mm.120250	NM_080466	ENSMUSG00000000794	Kcnn3	KCa2.3|SK3|SKCA3	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-64594421-2	chr17	64594321	64594521	+	625.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7228.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-20702094-11	chr5	20702071	20702271	+	951.4772949999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001170745, exon 21 of 21)	3' UTR (NM_001170745, exon 21 of 21)	179953.0	NM_172992	68770.0	Mm.86410	NM_172992	ENSMUSG00000039987	Phtf2	1110054G21Rik|9530062N20Rik|AI447096|C77923	putative homeodomain transcription factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-108855073-2	chr3	108855009	108855209	+	594.5	f0_balb.idr|f1_c57bl6.idr	3' UTR (NM_177091, exon 13 of 13)	3' UTR (NM_177091, exon 13 of 13)	-14607.0	NM_011504	20912.0	Mm.316894	NM_011504	ENSMUSG00000027882	Stxbp3	Munc-18c|Stxbp3a|Sxtbp3|Unc18-3	syntaxin binding protein 3	protein-coding	1.24647630441174	1.84113432875558	0.582993982980624	0.572459299851694	1.15455957385156	0.599367064621421	0.585972557058672	1.23248232103317	-0.996669432787911	0.539468145025598	0.954403851908463
Merged-chr11-35840080-2	chr11	35839980	35840180	+	987.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_170779, intron 22 of 22)	intron (NM_170779, intron 22 of 22)	-5552.0	NM_025936	104458.0	Mm.284906	NM_025936	ENSMUSG00000018848	Rars	2610011N19Rik|2610037E21Rik|AL033339|AW985894	arginyl-tRNA synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-51974495-2	chr15	51974395	51974595	+	767.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009009, intron 4 of 13)	B1_Mur2|SINE|Alu	17265.0	NM_009009	19357.0	Mm.182628	NM_009009	ENSMUSG00000022314	Rad21	SCC1|mKIAA0078	RAD21 cohesin complex component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-9797302-4	chr1	9797245	9797445	+	915.339294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177547)	promoter-TSS (NM_177547)	-785.0	NM_133220	170755.0	Mm.336410	NM_133220	ENSMUSG00000025915	Sgk3	2510015P22Rik|A330005P07Rik|Cisk|fy|fz	serum/glucocorticoid regulated kinase 3	protein-coding	-0.394821885508196	-0.757757771966637	-0.195169845244714	-0.763364242872938	-0.766804349483022	-0.757042947947547	-0.76022703016277	-0.762938404624901	-3.14800507728477	0.280583858862927	1
Merged-chr9-75561325-1	chr9	75561225	75561425	+	910.0	f1_c57bl6.idr	Intergenic	RMER1C|Other|Other	-1668.0	NM_001357828	50875.0	Mm.38445	NM_016963	ENSMUSG00000058587	Tmod3	U-Tmod|UTMOD	tropomodulin 3	protein-coding	0.335130163299975	0.395406646633827	0.721574386014802	0.593266091019753	0.213445242209506	0.399858322901706	0.222893559265227	0.48906539696053	-1.53532136172669	0.398731126995162	1
Merged-chr8-61581495-2	chr8	61581402	61581602	+	789.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001293772, intron 10 of 21)	intron (NM_001293772, intron 10 of 21)	9667.0	NM_001293774	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	2.57976624860338	2.64121916329301	1.29826461639602	1.88387000985742	1.80318608003349	2.66122903430279	2.57043706148382	1.72285964305302	0.093000894488148	0.923213777317642	0.998431161219273
Merged-chr2-144267088-2	chr2	144266988	144267188	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_030762)	promoter-TSS (NR_030762)	-886.0	NR_030762	100313519.0	Mm.453538	NR_030762	ENSMUSG00000077714	Snord17	MBI-43	small nucleolar RNA, C/D box 17	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-113612134-2	chr13	113612034	113612234	+	703.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_130796, intron 1 of 1)	intron (NM_130796, intron 1 of 1)	6430.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-75765975-4	chr12	75765884	75766084	+	755.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30255.0	NM_030750	81535.0	Mm.280199	NM_030750	ENSMUSG00000021054	Sgpp1	AI463453|SPP|SPP1|Spph1	sphingosine-1-phosphate phosphatase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-70367151-4	chr9	70367074	70367274	+	894.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181072, intron 19 of 27)	intron (NM_181072, intron 19 of 27)	38579.0	NR_049200	100885839.0		NR_049200	ENSMUSG00000093763	Mir5626	Gm25590|mir-5626|mmu-mir-5626	microRNA 5626	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16893613-2	chr7	16893513	16893713	+	725.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010320, intron 2 of 3)	intron (NM_010320, intron 2 of 3)	1827.0	NM_010320	14709.0	Mm.103770	NM_010320	ENSMUSG00000063594	Gng8	G(y)8	guanine nucleotide binding protein (G protein), gamma 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-63138918-4	chr11	63138827	63139027	+	797.645813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302255, intron 3 of 4)	intron (NM_001302255, intron 3 of 4)	6124.0	NM_001302260	18858.0	Mm.1237	NM_008885	ENSMUSG00000018217	Pmp22	22kDa|Gas-3|HNPP|TRE002|Tr|trembler	peripheral myelin protein 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-66323375-4	chr7	66323239	66323439	+	817.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146191, intron 6 of 33)	intron (NM_146191, intron 6 of 33)	58385.0	NR_106024	102465640.0		NR_106024	ENSMUSG00000098353	Mir7057	Gm27550|mmu-mir-7057	microRNA 7057	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-40036694-3	chr12	40036587	40036787	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007487, exon 2 of 2)	exon (NM_007487, exon 2 of 2)	689.0	NM_007487	11861.0	Mm.12723	NM_007487	ENSMUSG00000047446	Arl4a	AI467555|Arl4	ADP-ribosylation factor-like 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-147574709-4	chr5	147574621	147574821	+	894.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010228, intron 25 of 29)	intron (NM_010228, intron 25 of 29)	144565.0	NM_028291	72587.0	Mm.320469	NM_028291	ENSMUSG00000029647	Pan3	2700050F09Rik|A430027N15Rik|AU014670	PAN3 poly(A) specific ribonuclease subunit	protein-coding	0.901723209219418	0.164111727358082	0.157032931502918	0.995255566220835	0.301853326828584	0.165701561026766	0.35218953820467	0.152502714973951	-2.64007441410073	0.191804132015766	1
Merged-chr12-85228670-3	chr12	85228502	85228702	+	937.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9121.0	NM_145445	217715.0	Mm.29041	NM_145445	ENSMUSG00000004788	Eif2b2	EIF-2Bbeta|EIF2B	eukaryotic translation initiation factor 2B, subunit 2 beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35136771-2	chr17	35136671	35136871	+	710.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252469, intron 2 of 23)	intron (NM_001252469, intron 2 of 23)	1057.0	NM_001252469	224727.0	Mm.203962	NM_057171	ENSMUSG00000024392	Bag6	2410045D21Rik|AA408914|BAG-6|Bat3|D17H6S52E|G3|Scythe	BCL2-associated athanogene 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46338713-4	chr19	46338589	46338789	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164295)	promoter-TSS (NM_001164295)	-29.0	NM_001164292	67116.0	Mm.218848	NM_024192	ENSMUSG00000036748	Cuedc2	3010002G01Rik	CUE domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-6555735-4	chr15	6555618	6555818	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24129.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-9508574-4	chr18	9508474	9508674	+	887.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TCCTG)n|Simple_repeat|Simple_repeat	-58420.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76709128-2	chr15	76709028	76709228	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_058214, exon 5 of 22)	exon (NM_058214, exon 5 of 22)	1431.0	NM_058214	79456.0	Mm.18373	NM_058214	ENSMUSG00000033762	Recql4	RecQ4	RecQ protein-like 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-145308498-2	chr6	145308388	145308588	+	588.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57936.0	NR_045598	100039495.0	Mm.121014	NR_045598	ENSMUSG00000086013	Gm15706	-	predicted gene 15706	ncRNA	-0.0825153221030667	-0.314538141714482	-0.318124008806399	0.16999606336875	-0.0765156477192736	-0.132669514560997	-0.317335090898354	-0.320395336751712	-0.921000952774744	0.696464720312658	1
Merged-chr17-34586966-2	chr17	34586866	34587066	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010929, intron 28 of 29)	CpG	-2840.0	NM_134116	106512.0	Mm.26584	NM_134116	ENSMUSG00000034786	Gpsm3	AA960287|AGS4	G-protein signalling modulator 3 (AGS3-like, C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-85715165-6	chr11	85714999	85715199	+	877.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045875, intron 1 of 5)	intron (NR_045875, intron 1 of 5)	4645.0	NR_045875	71489.0	Mm.442482	NR_045875	ENSMUSG00000086199	Bcas3os1	8430403D17Rik	breast carcinoma amplified sequence 3, opposite strand 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-84796778-1	chr2	84796678	84796878	+	549.0	f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-2050.0	NM_019949	56791.0	Mm.38261	NM_019949	ENSMUSG00000027078	Ube2l6	2810489I21Rik|RIG-B|UBCH8|Ubce8|Ubcm8	ubiquitin-conjugating enzyme E2L 6	protein-coding	0.727073863536001	0.590245211113925	0.578235423979018	1.64931714314718	0.882509265514308	1.17164569198361	0.580901879290773	1.41066319106541	0.235710911630438	0.881181311218907	0.998431161219273
Merged-chr6-22459640-3	chr6	22459539	22459739	+	913.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR48B|LTR|ERV1	-103558.0	NM_138587	27999.0	Mm.490307	NM_138587	ENSMUSG00000029672	Fam3c	D6Wsu176e|Ilei	family with sequence similarity 3, member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-53386923-4	chr9	53386820	53387020	+	968.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_212445, intron 1 of 7)	intron (NM_212445, intron 1 of 7)	2897.0	NM_212445	68304.0	Mm.427519	NM_212445	ENSMUSG00000034487	Kdelc2	2010004J24Rik|4833410J10Rik|AW549401	KDEL (Lys-Asp-Glu-Leu) containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-103115555-4	chr14	103115467	103115667	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207215, intron 84 of 84)	intron (NM_207215, intron 84 of 84)	-16001.0	NM_001360342	50789.0	Mm.214746	NM_015822	ENSMUSG00000022124	Fbxl3	AU041772|AW212966|FBK|Fbl3a|Fbxl3a|Ovtm|Play68	F-box and leucine-rich repeat protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126519304-2	chr7	126519204	126519404	+	788.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15867.0	NM_183020	233871.0	Mm.231450	NM_183020	ENSMUSG00000032637	Atxn2l	A2D|A2LG|A2RP|A2lp|Atxnl2	ataxin 2-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115632409-2	chr5	115632309	115632509	+	998.8333130000001	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027810)	promoter-TSS (NR_027810)	422.0	NM_198163	77407.0	Mm.27553	NM_198163	ENSMUSG00000029518	Rab35	9530019H02Rik|AU040256|H-ray|RAB1C|RAY	RAB35, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-59137487-1	chr2	59137387	59137587	+	566.0	f0_balb.idr	intron (NM_001362394, intron 1 of 13)	intron (NM_001362394, intron 1 of 13)	23196.0	NM_001362393	227933.0	Mm.330234	NM_177650	ENSMUSG00000036641	Ccdc148	5830402J09|Gm38473	coiled-coil domain containing 148	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-76588715-4	chr5	76588585	76588785	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-3029.0	NM_199032	381644.0	Mm.332452	NM_199032	ENSMUSG00000036403	Cep135	BC062951|Cep4|Gm1044	centrosomal protein 135	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-66310814-4	chr7	66310728	66310928	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146191, intron 6 of 33)	MTC|LTR|ERVL-MaLR	70896.0	NR_106024	102465640.0		NR_106024	ENSMUSG00000098353	Mir7057	Gm27550|mmu-mir-7057	microRNA 7057	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81551721-4	chr10	81551587	81551787	+	997.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6641.0	NM_010301	14672.0	Mm.260925	NM_010301	ENSMUSG00000034781	Gna11	Dsk7|E430025L19	guanine nucleotide binding protein, alpha 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-7945866-4	chr17	7945747	7945947	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_025789, exon 1 of 8)	exon (NM_025789, exon 1 of 8)	233.0	NM_025789	66832.0	Mm.29830	NM_025789	ENSMUSG00000073471	Rsph3a	1700012G05Rik|4930524H12Rik|R74860|Rshl2|Rshl2a	radial spoke 3A homolog (Chlamydomonas)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-154612481-2	chr2	154612381	154612581	+	580.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199304)	promoter-TSS (NM_199304)	-887.0	NM_199304	228807.0	Mm.103555	NM_199304	ENSMUSG00000059842	Zfp341	Znf341	zinc finger protein 341	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-121995003-4	chr14	121994916	121995116	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026861, intron 7 of 8)	intron (NM_026861, intron 7 of 8)	-29823.0	NM_183031	321019.0	Mm.265618	NM_183031	ENSMUSG00000051212	Gpr183	Ebi2	G protein-coupled receptor 183	protein-coding	5.92758958977913	6.4808691591621	6.64549117245617	6.20819923975726	5.73706498108745	5.35089714103739	5.71902169800473	5.43482688195907	-0.838362982119611	0.000778529616122944	0.0158318615834629
Merged-chr1-54795461-4	chr1	54795379	54795579	+	987.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081433, intron 2 of 27)	MTD|LTR|ERVL-MaLR	130908.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31571207-2	chr14	31571107	31571307	+	815.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009937, intron 1 of 16)	MER5A|DNA|hAT-Charlie	6176.0	NM_009937	382864.0	Mm.239821	NM_009937	ENSMUSG00000057606	Colq	A130034K24Rik	collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-181278043-4	chr2	181277940	181278140	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_198169, exon 2 of 10)	exon (NM_198169, exon 2 of 10)	9926.0	NM_198169	229004.0	Mm.220423	NM_198169	ENSMUSG00000038705	Gmeb2	AI839884	glucocorticoid modulatory element binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10699962-2	chr19	10699862	10700062	+	663.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361964)	promoter-TSS (NM_001361964)	-806.0	NM_001361964	107305.0	Mm.19091	NM_181403	ENSMUSG00000048832	Vps37c	5730409F24Rik|AU042646	vacuolar protein sorting 37C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-111924651-4	chr13	111924551	111924751	+	868.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56715.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-103762396-3	chr7	103762303	103762503	+	729.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5053.0	NM_147098	259102.0	Mm.377844	NM_147098	ENSMUSG00000050281	Olfr630	MOR17-1	olfactory receptor 630	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-118707225-1	chr7	118707125	118707325	+	561.0	f1_c57bl6.idr	Intergenic	RMER17C|LTR|ERVK	-1487.0	NM_019580	56209.0	Mm.273142	NM_019580	ENSMUSG00000033917	Gde1	1200003M13Rik|Mir16|RGS16	glycerophosphodiester phosphodiesterase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-106236285-3	chr9	106236193	106236393	+	914.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020559, intron 9 of 10)	intron (NM_020559, intron 9 of 10)	11437.0	NM_001291835	11655.0	Mm.290578	NM_020559	ENSMUSG00000032786	Alas1	ALAS|ALAS-N|Alas-1|Alas-h	aminolevulinic acid synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-88241740-1	chr1	88241640	88241840	+	614.5	f0_balb.idr	intron (NM_001281466, intron 19 of 41)	intron (NM_001281466, intron 19 of 41)	14720.0	NM_001281466	100040766.0	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	Heatr7b1	maestro heat-like repeat family member 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-102688777-3	chr4	102688674	102688874	+	885.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-71361.0	NM_001285860	73094.0	Mm.54201	NM_144906	ENSMUSG00000028524	Sgip1	3110007P09Rik|SGIP1alpha|gag	SH3-domain GRB2-like (endophilin) interacting protein 1	protein-coding	2.03996902301919	2.21286593418287	2.03368150994068	1.86712434563989	1.67240635806842	1.56250284879952	1.08920519609521	1.07045071074407	-2.1437881084134	0.0585038066231909	0.357370254408199
Merged-chr10-57759173-4	chr10	57759092	57759292	+	987.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25731.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70321860-2	chr11	70321760	70321960	+	757.333374	f1_balb.idr|f1_c57bl6.idr	exon (NM_145684, exon 2 of 14)	exon (NM_145684, exon 2 of 14)	670.0	NM_145684	11685.0	Mm.274093	NM_145684	ENSMUSG00000018907	Alox12e	12-LOX|8-LOX|AW259591|Alox12-ps1|Alox12-ps2|Aloxe|e-LOX1	arachidonate lipoxygenase, epidermal	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-110936492-2	chr12	110936392	110936592	+	962.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175336, intron 11 of 20)	intron (NM_175336, intron 11 of 20)	42126.0	NM_001361917	74251.0	Mm.250989	NM_175207	ENSMUSG00000037904	Ankrd9	2500003O20Rik	ankyrin repeat domain 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-114648774-4	chr6	114648686	114648886	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253718, intron 2 of 19)	intron (NM_001253718, intron 2 of 19)	5689.0	NM_001253718	74244.0	Mm.275332	NM_028835	ENSMUSG00000030314	Atg7	1810013K23Rik|Agp7|Apg7l|Atg7l|Gm21553	autophagy related 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-44233553-2	chr10	44233453	44233653	+	857.6666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	18128.0	NR_027506	70365.0	Mm.87073	NR_001582	ENSMUSG00000091358	Speer5-ps1	1700007C10Rik|SPEER-5|Speer5-ps	spermatogenesis associated glutamate (E)-rich protein 5, pseudogene 1	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-118120194-2	chr7	118120094	118120294	+	850.625	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_019419, exon 6 of 6)	3' UTR (NM_019419, exon 6 of 6)	-4047.0	NM_170669	267019.0	Mm.288212	NM_170669	ENSMUSG00000008683	Rps15a	A630031B11Rik	ribosomal protein S15A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35007809-2	chr17	35007709	35007909	+	977.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011690, intron 8 of 29)	B3|SINE|B2	6902.0	NM_011690	22321.0	Mm.28420	NM_011690	ENSMUSG00000007029	Vars	Bat6|D17H6S56E|G7a|Vars2	valyl-tRNA synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-49980873-2	chr11	49980773	49980973	+	821.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001347462)	TTS (NM_001347462)	-44458.0	NM_021540	59044.0	Mm.359004	NM_021540	ENSMUSG00000020376	Rnf130	2510042A13Rik|G1RZFP|G1rp|GOLIATH|GP	ring finger protein 130	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-74722634-2	chr15	74722534	74722734	+	579.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198607, intron 1 of 1)	intron (NM_198607, intron 1 of 1)	1400.0	NM_198607	223626.0	Mm.268603	NM_198607	ENSMUSG00000056665	Them6	4930572J05Rik	thioesterase superfamily member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-33782690-1	chr17	33782590	33782790	+	707.0	f1_balb.idr	Intergenic	B1_Mur1|SINE|Alu	-1115.0	NM_020581	57875.0	Mm.196189	NM_020581	ENSMUSG00000002289	Angptl4	Arp4|Bk89|Fiaf|Hfarp|Ng27|Pgar|Pgarg|Pp1158	angiopoietin-like 4	protein-coding	1.00367176743689	0.51100633278493	0.501313065753443	0.493763767280698	0.647030538213052	0.906734358826046	1.4328451031582	1.0858657272147	2.10464974332314	0.202968028853064	1
Merged-chr15-79455015-4	chr15	79454911	79455111	+	967.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12868.0	NM_001359863	27373.0	Mm.30199	NM_013767	ENSMUSG00000022433	Csnk1e	AI426939|AI551861|AW457082|CK1epsilon|CKIe|KC1epsilon|tau	casein kinase 1, epsilon	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4584715-3	chr16	4584595	4584795	+	960.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-10018.0	NM_031184	83396.0	Mm.134072	NM_031184	ENSMUSG00000014303	Glis2	Gli5|Klf16|Nkl	GLIS family zinc finger 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-41021395-2	chr4	41021295	41021495	+	915.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023739, intron 19 of 23)	B4|SINE|B4	26741.0	NM_007473	11832.0	Mm.8728	NM_007473	ENSMUSG00000028427	Aqp7	AQP7L|AQPap	aquaporin 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101900853-4	chr7	101900748	101900948	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081679, intron 3 of 3)	MIRb|SINE|MIR	2937.0	NM_001282088	791260.0	Mm.475469	NM_001081679	ENSMUSG00000078630	Tomt	Comt2|F930017I19Rik	transmembrane O-methyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-113674685-2	chr6	113674585	113674785	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 5 of 11)	intron (NM_001113553, intron 5 of 11)	-22365.0	NM_001347356	381801.0	Mm.333322	NM_001033463	ENSMUSG00000056952	Tatdn2	AI646012|mKIAA0218	TatD DNase domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135618186-3	chr4	135618105	135618305	+	942.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8450.0	NR_015613	73937.0	Mm.292326	NM_028688	ENSMUSG00000086788	1700029M20Rik	4930406E24Rik	RIKEN cDNA 1700029M20 gene	ncRNA	2.71261229443867	3.29887266433839	2.74291126706324	3.17277094218694	2.43925730369549	2.2904123692069	1.52439509693044	3.11795290349248	-1.00249090109249	0.199551990694729	0.683023426499248
Merged-chr7-18990093-2	chr7	18989993	18990193	+	678.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1152.0	NM_145579	232934.0	Mm.440069	NM_145579	ENSMUSG00000048481	Mypop	Myodysa|P42pop	Myb-related transcription factor, partner of profilin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-74056323-2	chr5	74056223	74056423	+	649.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177561, intron 1 of 8)	intron (NM_177561, intron 1 of 8)	12088.0	NM_177561	69727.0	Mm.48795	NM_177561	ENSMUSG00000054814	Usp46	1190009E20Rik|2410018I08Rik|AI451644	ubiquitin specific peptidase 46	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-62038214-1	chr18	62038114	62038314	+	554.0	f1_balb.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	85139.0	NM_172628	225608.0	Mm.262320	NM_172628	ENSMUSG00000045629	Sh3tc2	D430044G18Rik	SH3 domain and tetratricopeptide repeats 2	protein-coding	1.1464624773585	1.30565724948451	0.733426780702317	0.723398300478025	1.54456382806888	1.3168640878116	1.61158204304497	0.725159724993971	1.42958957813273	0.33102780945891	0.83197671091297
Merged-chr16-23284627-4	chr16	23284540	23284740	+	979.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252505, intron 2 of 7)	intron (NM_001252505, intron 2 of 7)	-5830.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150730422-4	chr4	150730329	150730529	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-78255.0	NM_173774	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-154126900-2	chr1	154126800	154127000	+	784.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-74287.0	NM_001204908	100503355.0	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	Gm10178|Gm203	zinc finger protein 648	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-100421185-3	chr12	100421040	100421240	+	655.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033213, intron 5 of 19)	intron (NM_001033213, intron 5 of 19)	99682.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-87517273-4	chr6	87517178	87517378	+	965.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037727, intron 1 of 10)	intron (NM_001037727, intron 1 of 10)	15981.0	NM_001037727	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67553004-2	chr10	67552904	67553104	+	777.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-4049.0	NM_001005419	211488.0	Mm.297250	NM_001005419	ENSMUSG00000057134	Ado	Gm237	2-aminoethanethiol (cysteamine) dioxygenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-35728756-3	chr2	35728645	35728845	+	761.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001114124, exon 16 of 16)	3' UTR (NM_001114124, exon 16 of 16)	32013.0	NM_001290639	69601.0	Mm.29629	NM_001001602	ENSMUSG00000026883	Dab2ip	2310011D08Rik|AI480459|Aip1|mKIAA1743	disabled 2 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-108433042-4	chr6	108432940	108433140	+	803.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 42 of 61)	intron (NM_010585, intron 42 of 61)	-56703.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-123196432-4	chr10	123196294	123196494	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301628, intron 1 of 20)	CpG	625.0	NM_027604	14479.0	Mm.244209	NM_027604	ENSMUSG00000020124	Usp15	4921514G19Rik|AI327321|E430033I05Rik|Gcap18	ubiquitin specific peptidase 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-84095969-2	chr17	84095869	84096069	+	752.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17309.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-66119048-4	chr7	66118951	66119151	+	953.033325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081163, intron 1 of 2)	intron (NM_001081163, intron 1 of 2)	9536.0	NM_001081163	269941.0	Mm.333916	NM_001081163	ENSMUSG00000032640	Chsy1	mKIAA0990	chondroitin sulfate synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-109440060-4	chr11	109439968	109440168	+	991.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040680)	promoter-TSS (NR_040680)	-10.0	NR_040680	100503496.0	Mm.265874	NR_040680		Gm45916	-	predicted gene, 45916	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-8509300-4	chr6	8509194	8509394	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133236)	promoter-TSS (NM_133236)	-133.0	NR_040452	320312.0	Mm.374890	NR_040452	ENSMUSG00000087305	A430035B10Rik	2810488G03Rik	RIKEN cDNA A430035B10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59527363-2	chr15	59527263	59527463	+	554.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026746, intron 4 of 6)	intron (NM_026746, intron 4 of 6)	-121291.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-30974355-4	chr14	30974236	30974436	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011849, exon 8 of 15)	exon (NM_011849, exon 8 of 15)	22959.0	NM_011849	23955.0	Mm.251494	NM_011849	ENSMUSG00000021918	Nek4	Stk2	NIMA (never in mitosis gene a)-related expressed kinase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-89231169-3	chr15	89231074	89231274	+	855.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026813, intron 1 of 24)	MLTR11B|LTR|ERVK	19615.0	NM_027805	71474.0	Mm.184055	NM_026813	ENSMUSG00000036561	Ppp6r2	1110033O10Rik|8430411H09Rik|B230107H12Rik|Pp6r2|Saps2	protein phosphatase 6, regulatory subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139149403-1	chr5	139149303	139149503	+	1000.0	f0_balb.idr	promoter-TSS (NM_001081265)	promoter-TSS (NM_001081265)	598.0	NM_001359098	19085.0	Mm.306163	NM_008923	ENSMUSG00000025855	Prkar1b	AI385716|RIbeta	protein kinase, cAMP dependent regulatory, type I beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-50841108-1	chr15	50841008	50841208	+	549.0	f1_c57bl6.idr	intron (NM_001310481, intron 2 of 5)	intron (NM_001310481, intron 2 of 5)	47941.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-85112355-1	chr16	85112255	85112455	+	713.0	f0_balb.idr	intron (NM_001198825, intron 2 of 15)	intron (NM_001198825, intron 2 of 15)	61352.0	NM_001198825	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-32540891-4	chr9	32540781	32540981	+	982.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008026, intron 1 of 8)	CpG	571.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124006294-1	chr5	124006194	124006394	+	628.0	f1_balb.idr	exon (NM_177876, exon 4 of 4)	exon (NM_177876, exon 4 of 4)	9442.0	NR_105999	102465625.0		NR_105999	ENSMUSG00000098454	Mir7032	Gm27309|mmu-mir-7032	microRNA 7032	ncRNA	-0.867192004373006	-0.853178049867322	-0.857829183672456	0.175105548543967	-0.866307924685362	-0.85201738026348	-0.856843285303794	-0.860697015180688	-3.81510527957311	0.172414890274837	1
Merged-chr19-47855015-4	chr19	47854907	47855107	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010362)	promoter-TSS (NM_010362)	34.0	NM_010362	14873.0	Mm.378931	NM_010362	ENSMUSG00000025068	Gsto1	AA407097|AI194287|AU018802|Gsto-1|Gstx|Spg-r|p28	glutathione S-transferase omega 1	protein-coding	4.66035166135123	4.92105208890526	4.30454152719621	4.35749009342853	4.69545605394568	5.46068247799424	4.84782294504233	5.13989650587457	0.584035641433649	0.0980373239120587	0.48685919383149
Merged-chr1-56100356-3	chr1	56100231	56100431	+	671.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	81353.0	NR_126076	69356.0	Mm.393775	NR_126075	ENSMUSG00000100372	1700003I22Rik	-	RIKEN cDNA 1700003I22 gene	ncRNA	1.11784236120362	0.585328571524402	0.57800342058135	0.57237904011917	1.27832428038449	1.45791355082999	0.753075318007998	0.573359872918949	1.87091021923433	0.280439441232564	0.783412873231201
Merged-chr15-19753686-2	chr15	19753586	19753786	+	644.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	568313.0	NR_155419	102639102.0	Mm.463245	NR_155419	ENSMUSG00000115803	Gm35496	-	predicted gene, 35496	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-146668825-4	chr6	146668783	146668983	+	893.875	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	11665.0	NR_046277	74925.0	Mm.386304	NR_046277	ENSMUSG00000085238	4930479D17Rik	-	RIKEN cDNA 4930479D17 gene	ncRNA	1.94781227862525	2.30323776406502	2.10180661815227	2.27637829904958	2.27508030526083	2.54505215036322	2.24473613084034	1.57228924759877	0.114452630931719	0.897125074230891	0.998431161219273
Merged-chr5-123568354-3	chr5	123568259	123568459	+	867.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359513, intron 4 of 11)	intron (NM_001359513, intron 4 of 11)	4656.0	NM_001359513	77573.0	Mm.41372	NM_029929	ENSMUSG00000029434	Vps33a	3830421M04Rik|AI503300|AW048546|AW554476|bf	VPS33A CORVET/HOPS core subunit	protein-coding	4.03377431886662	3.78928910253421	4.04962683731129	3.79262350961635	2.23316044237861	1.56720324602791	1.50159727428127	2.67025720193692	-3.1562889371626	7.37832371741609e-06	0.000357918307122203
Merged-chr10-111875084-1	chr10	111874984	111875184	+	543.0	f1_balb.idr	promoter-TSS (NR_046029)	promoter-TSS (NR_046029)	-708.0	NR_046029	629206.0	Mm.391444	NR_046029	ENSMUSG00000112533	Gm20758	-	predicted gene, 20758	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-90207437-2	chr9	90207337	90207537	+	887.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 12 of 12)	intron (NM_194334, intron 12 of 12)	44459.0	NM_001311115	108153.0	Mm.102141	NM_001003911	ENSMUSG00000032363	Adamts7	ADAM-TS7|ADAMTS7B	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-63422837-2	chr14	63422737	63422937	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M3c|LINE|L1	-5650.0	NM_007549	12143.0	Mm.3962	NM_007549	ENSMUSG00000014453	Blk	-	B lymphoid kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-109860263-1	chr11	109860163	109860363	+	589.0	f0_c57.idr	Intergenic	Intergenic	14385.0	NR_045909	73257.0	Mm.250442	NR_045909	ENSMUSG00000087393	1700023C21Rik	-	RIKEN cDNA 1700023C21 gene	ncRNA	3.66523650380613	2.83811988138817	1.8208224065065	3.77400322128462	1.66830619151993	1.33493197018972	2.04614662383795	1.97239015869549	-2.8955562956332	0.00108861591962912	0.0207540473575903
Merged-chr16-44141565-5	chr16	44141425	44141625	+	728.866638	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028108, intron 1 of 4)	intron (NM_028108, intron 1 of 4)	1716.0	NM_028108	72117.0	Mm.278726	NM_028108	ENSMUSG00000022698	Naa50	2600005K24Rik|2810441M03Rik|AW112078|Mak3|Mak3p|Nat13|Nat5|San	N(alpha)-acetyltransferase 50, NatE catalytic subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6465495-2	chr19	6465395	6465595	+	582.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205234, intron 7 of 22)	intron (NM_001205234, intron 7 of 22)	46757.0	NM_001205234	18190.0	Mm.329616	NM_020253	ENSMUSG00000033768	Nrxn2	6430591O13Rik|mKIAA0921	neurexin II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-71458195-4	chr6	71458106	71458306	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-17569.0	NM_024288	68477.0	Mm.28474	NM_024288	ENSMUSG00000002222	Rmnd5a	1110007A06Rik|AJ237586|AW125795|Gid2|MTA.D02.090	required for meiotic nuclear division 5 homolog A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-17911622-2	chr17	17911522	17911722	+	751.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23798.0	NM_008039	14289.0	Mm.378918	NM_008039	ENSMUSG00000052270	Fpr2	E330010I07Rik|Fpr-rs2	formyl peptide receptor 2	protein-coding	1.42234012750545	0.747977090778669	1.23710525709333	1.59941516079659	1.14228138445352	0.750552866796221	0.739025140617999	1.32347787504673	-1.17667309538699	0.425056644992662	0.901293602726532
Merged-chr9-77655689-10	chr9	77655555	77655755	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172925, exon 3 of 3)	exon (NM_172925, exon 3 of 3)	18923.0	NM_172925	244923.0	Mm.138238	NM_172925	ENSMUSG00000044938	Klhl31	9830147P19Rik|D930047P17Rik|Kbtbd1	kelch-like 31	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-106953777-3	chr8	106953668	106953868	+	915.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009229, intron 1 of 6)	intron (NM_009229, intron 1 of 6)	18018.0	NM_009229	20650.0	Mm.30228	NM_009229	ENSMUSG00000041308	Sntb2	Snt2	syntrophin, basic 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-5324380-2	chr9	5324280	5324480	+	562.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007609, intron 4 of 8)	intron (NM_007609, intron 4 of 8)	15531.0	NM_007609	12363.0	Mm.1569	NM_007609	ENSMUSG00000033538	Casp4	CASP-11|CASP-4|Casp11|Caspl|ich-3	caspase 4, apoptosis-related cysteine peptidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36273493-4	chr1	36273396	36273596	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153408)	promoter-TSS (NM_153408)	-71.0	NM_153408	214854.0	Mm.389110	NM_153408	ENSMUSG00000047180	Neurl3	2010300P06Rik|Lincr	neuralized E3 ubiquitin protein ligase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-12320896-4	chr12	12320803	12321003	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146119, intron 2 of 11)	intron (NM_001146119, intron 2 of 11)	58764.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-72322619-4	chr8	72322538	72322738	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008452)	TTS (NM_008452)	3576.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-79022901-2	chr11	79022801	79023001	+	989.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045873)	promoter-TSS (NR_045873)	-696.0	NR_045873	790910.0	Mm.440410	NR_045873		Gm11201	-	predicted gene 11201	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-20951564-2	chr9	20951464	20951664	+	978.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199432, intron 1 of 38)	intron (NM_001199432, intron 1 of 38)	1059.0	NM_001199433	13433.0	Mm.128580	NM_010066	ENSMUSG00000004099	Dnmt1	Cxxc9|Dnmt|Dnmt1o|MCMT|MTase|Met-1|Met1|MommeD2|m.MmuI	DNA methyltransferase (cytosine-5) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-50833925-2	chr15	50833825	50834025	+	746.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310481, intron 2 of 5)	intron (NM_001310481, intron 2 of 5)	55124.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-20649108-2	chr18	20649008	20649208	+	690.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_155534, intron 1 of 2)	intron (NR_155534, intron 1 of 2)	-16142.0	NM_013697	22139.0	Mm.2108	NM_013697	ENSMUSG00000061808	Ttr	AA408768|AI787086|D17860|prealbumin	transthyretin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-33760481-4	chr17	33760384	33760584	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008997)	promoter-TSS (NM_008997)	2.0	NM_008997	19326.0	Mm.387587	NM_008997	ENSMUSG00000077450	Rab11b	A730055L17Rik	RAB11B, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-31433402-2	chr3	31433302	31433502	+	686.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-123083.0	NM_172861	241919.0	Mm.285366	NM_172861	ENSMUSG00000069072	Slc7a14	A930013N06|BC061928	solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-78659207-1	chr1	78659107	78659307	+	901.5	f0_balb.idr	intron (NM_001136226, intron 1 of 3)	intron (NM_001136226, intron 1 of 3)	767.0	NM_001136226	195434.0	Mm.276016	NM_001001981	ENSMUSG00000079470	Utp14b	4932411L21Rik|jsd	UTP14B small subunit processome component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-4592136-3	chr12	4592034	4592234	+	591.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001198968)	promoter-TSS (NM_001198968)	-874.0	NM_001198969	20403.0	Mm.341204	NM_011365	ENSMUSG00000020640	Itsn2	AI327390|Ese2|Sh3d1B|Sh3p18|mKIAA1256	intersectin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-67358598-2	chr17	67358498	67358698	+	928.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4107.0	NM_001357625	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-87214716-4	chr3	87214612	87214812	+	895.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-39965.0	NM_130867	170643.0	Mm.89552	NM_130867	ENSMUSG00000041734	Kirrel	6720469N11Rik|Kirrel1|Neph1	kirre like nephrin family adhesion molecule 1	protein-coding	4.41363825437939	4.36501937116573	4.63084818628243	4.65846284689397	3.58866865605285	2.63692464117951	2.71493724051091	2.77366025449154	-2.14616950622701	1.89949914698317e-05	0.000778708112716541
Merged-chr3-26014438-2	chr3	26014338	26014538	+	566.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_138666, intron 3 of 7)	Lx5c|LINE|L1	139548.0	NM_001163387	192167.0	Mm.316080	NM_138666	ENSMUSG00000063887	Nlgn1	6330415N05Rik|BB179718|NL1|Nlg1|mKIAA1070	neuroligin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-49013190-4	chr6	49013080	49013280	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13564.0	NR_126454	75347.0	Mm.207324	NR_126454	ENSMUSG00000107656	4930563H07Rik	-	RIKEN cDNA 4930563H07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-137194537-3	chr5	137194337	137194537	+	709.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-78230.0	NM_201373	384309.0	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	1.42140872103198	1.83058913156325	1.56179649546088	1.13863490725573	1.21918303914509	0.80745031149791	1.0060103264317	0.78163251356339	-2.37095358060808	0.0848292233484898	0.44758175503217
Merged-chr19-10173139-3	chr19	10173055	10173255	+	689.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-9733.0	NM_146094	76267.0	Mm.30158	NM_146094	ENSMUSG00000010663	Fads1	0710001O03Rik|A930006B21Rik|AI317215|DSD	fatty acid desaturase 1	protein-coding	1.60854823053612	0.778154807564357	0.762746999556791	0.750606307796151	1.21507040620267	1.02307313439528	1.69487930384402	1.88980957694155	1.68782255908592	0.240473740384748	0.736569477638593
Merged-chr9-63400261-2	chr9	63400161	63400361	+	804.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-1017.0	NM_027090	69478.0	Mm.113942	NM_027090	ENSMUSG00000032403	2300009A05Rik	-	RIKEN cDNA 2300009A05 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-82864410-2	chr8	82864308	82864508	+	849.6666869999999	f1_balb.idr|f1_c57bl6.idr	exon (NM_177378, exon 1 of 7)	exon (NM_177378, exon 1 of 7)	1052.0	NM_177378	330812.0	Mm.491438	NM_177378	ENSMUSG00000047747	Rnf150	A630007N06Rik|C030044C12Rik|Greul5|mKIAA1214	ring finger protein 150	protein-coding	1.37764892939471	1.73013265590456	2.34237125922723	2.27413333192439	1.96980236036146	2.54526993937246	1.23452915057573	2.37937895850747	0.330166471139909	0.747012543716205	0.998431161219273
Merged-chr4-28943626-3	chr4	28943514	28943714	+	673.133362	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290434, intron 9 of 16)	intron (NM_001290434, intron 9 of 16)	-124465.0	NR_151693	102634169.0		NR_151693		Gm11917	-	predicted gene 11917	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91841628-4	chr16	91841535	91841735	+	960.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110275, intron 19 of 28)	intron (NM_001110275, intron 19 of 28)	89995.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72736627-2	chr6	72736527	72736727	+	751.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001079822, intron 3 of 12)	intron (NM_001079822, intron 3 of 12)	52418.0	NM_001079822	21415.0	Mm.440067	NM_009332	ENSMUSG00000055799	Tcf7l1	Tcf-3|Tcf3|bHLHb21	transcription factor 7 like 1 (T cell specific, HMG box)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34909145-2	chr17	34909045	34909245	+	672.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286575, intron 21 of 27)	B1_Mur1|SINE|Alu	-5321.0	NM_023557	70129.0	Mm.183126	NM_023557	ENSMUSG00000007034	Slc44a4	2210409B01Rik|NG22|mTPPT1	solute carrier family 44, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-94090719-2	chr11	94090619	94090819	+	634.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001199203, exon 15 of 30)	exon (NM_001199203, exon 15 of 30)	46514.0	NM_001025429	70834.0	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-147084833-2	chr2	147084733	147084933	+	857.400024	f1_balb.idr|f1_c57bl6.idr	intron (NM_023504, intron 1 of 1)	CpG	512.0	NM_023504	228731.0	Mm.315498	NM_023504	ENSMUSG00000054160	Nkx2-4	1700001P03Rik|Nkx-2.4|tinman	NK2 homeobox 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-114588336-2	chr1	114588236	114588436	+	659.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-1096801.0	NM_001077425	636808.0	Mm.101576	NM_001077425	ENSMUSG00000070695	Cntnap5a	Caspr5-1|EG636808	contactin associated protein-like 5A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-21688797-2	chr4	21688697	21688897	+	996.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2834.0	NM_001080771	230025.0	Mm.208541	NM_001080771	ENSMUSG00000040478	Prdm13	-	PR domain containing 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-108105692-3	chr5	108105591	108105791	+	861.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152817, intron 16 of 16)	intron (NR_152817, intron 16 of 16)	26929.0	NM_001347383	73130.0	Mm.363960	NM_028876	ENSMUSG00000063406	Tmed5	3110020O18Rik|4432412D15Rik|p24gamma2	transmembrane p24 trafficking protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91645918-2	chr16	91645821	91646021	+	726.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_010256, intron 1 of 21)	intron (NM_010256, intron 1 of 21)	1051.0	NM_010256	14450.0	Mm.4505	NM_010256	ENSMUSG00000022962	Gart	Gaps|Prgs	phosphoribosylglycinamide formyltransferase	protein-coding	-0.717541876889383	-1.05685541724125	-1.06767587827142	-1.07341739815514	-1.07595272729156	-1.05451057819739	-0.897272344010799	-0.913295758340994	-0.224491936261253	0.941533984211983	1
Merged-chr7-130893253-4	chr7	130893156	130893356	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357696, intron 5 of 12)	intron (NM_001357696, intron 5 of 12)	-15012.0	NR_106028	102466219.0		NR_106028	ENSMUSG00000104914	Mir7061	mmu-mir-7061	microRNA 7061	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-65988037-2	chr14	65987937	65988137	+	546.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178747, intron 11 of 11)	intron (NM_178747, intron 11 of 11)	19554.0	NM_013492	12759.0	Mm.200608	NM_013492	ENSMUSG00000022037	Clu	AI893575|ApoJ|Cli|D14Ucla3|SP-40|Sgp-2|Sgp2|Sugp-2	clusterin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-92127033-4	chr6	92126901	92127101	+	897.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347342, intron 2 of 14)	intron (NM_001347342, intron 2 of 14)	34568.0	NM_001347342	22026.0	Mm.87062	NM_011630	ENSMUSG00000005893	Nr2c2	TAK1|Tr4|mKIAA4145	nuclear receptor subfamily 2, group C, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-112588689-4	chr12	112588595	112588795	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198411)	promoter-TSS (NM_198411)	-89.0	NM_198411	70435.0	Mm.250193	NM_198411	ENSMUSG00000037679	Inf2	2610204M08Rik|AA589465|AW125550|EG629699	inverted formin, FH2 and WH2 domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-56104468-4	chr9	56104366	56104566	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011193, intron 1 of 14)	intron (NM_011193, intron 1 of 14)	14490.0	NM_011193	19200.0	Mm.2534	NM_011193	ENSMUSG00000032322	Pstpip1	CD2BP1|def-2	proline-serine-threonine phosphatase-interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-45012560-4	chr4	45012481	45012681	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163284)	promoter-TSS (NM_001163284)	-169.0	NM_173399	230119.0	Mm.44222	NM_173399	ENSMUSG00000049657	Zbtb5	5930421I10|9430083K24Rik|AI646847|mKIAA0354	zinc finger and BTB domain containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-119088943-2	chr12	119088843	119089043	+	847.3333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-122522.0	NM_029961	77706.0	Mm.261496	NM_029961	ENSMUSG00000072791	Abcb5	9230106F14Rik	ATP-binding cassette, sub-family B (MDR/TAP), member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-54884607-4	chr11	54884504	54884704	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	18221.0	NM_008248	15254.0	Mm.425	NM_008248	ENSMUSG00000020267	Hint1	AA673479|Hint|Ipk1|PKCI-1|PRKCNH1	histidine triad nucleotide binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91030963-4	chr16	91030877	91031077	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152264, intron 7 of 17)	B1F1|SINE|Alu	13402.0	NM_026110	67367.0	Mm.347	NM_026110	ENSMUSG00000022974	Paxbp1	1810007M14Rik|C21orf66|Gcfc|Gcfc1|Pax3/7bp	PAX3 and PAX7 binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-14905061-4	chr14	14904923	14905123	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195229, intron 22 of 34)	intron (NM_001195229, intron 22 of 34)	84208.0	NM_001195229	674895.0	Mm.317563	NM_001034865	ENSMUSG00000042567	Nek10	Gm282	NIMA (never in mitosis gene a)- related kinase 10	protein-coding	0.639585289272959	0.0992606089700539	0.0935027115641623	0.252859260842044	0.354016347846583	0.100558213218553	0.0947728755008701	0.811202319185605	0.573438941121314	0.77947483436544	1
Merged-chr14-27249394-2	chr14	27249294	27249494	+	923.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_027871, intron 1 of 10)	intron (NM_027871, intron 1 of 10)	11384.0	NM_027871	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28823640-2	chr7	28823540	28823740	+	737.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-1698.0	NM_016772	51798.0	Mm.291776	NM_016772	ENSMUSG00000053898	Ech1	AA617331	enoyl coenzyme A hydratase 1, peroxisomal	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100739038-2	chr11	100738938	100739138	+	919.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024456)	promoter-TSS (NM_024456)	-823.0	NM_001305003	19345.0	Mm.29829	NM_024456	ENSMUSG00000019173	Rab5c	AI326010|Rabl	RAB5C, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-164824268-2	chr2	164824168	164824368	+	793.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_028028, intron 1 of 1)	intron (NM_028028, intron 1 of 1)	1582.0	NM_028028	71971.0	Mm.161149	NM_028028	ENSMUSG00000017764	Zswim1	2410003H12Rik|AI850991|BB046916	zinc finger SWIM-type containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-12592102-4	chr19	12591984	12592184	+	982.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015503, intron 1 of 1)	intron (NR_015503, intron 1 of 1)	4482.0	NR_015503	74333.0	Mm.329744	NR_015503	ENSMUSG00000086213	A330040F15Rik	-	RIKEN cDNA A330040F15 gene	ncRNA	1.16994604840166	0.581203344477629	0.570926966823553	0.900342207568999	1.18268221603875	0.583504301047241	0.773318746778004	1.5230718195002	1.10416136933616	0.488510225299735	0.933453007555711
Merged-chr18-36714302-2	chr18	36714177	36714377	+	990.875	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	12538.0	NM_009841	12475.0	Mm.3460	NM_009841	ENSMUSG00000051439	Cd14	-	CD14 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-166409306-4	chr1	166409206	166409406	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_175170, exon 2 of 6)	5' UTR (NM_175170, exon 2 of 6)	522.0	NM_001142948	71592.0	Mm.192094	NM_175170	ENSMUSG00000040596	Pogk	9130401E23Rik|BASS2|mKIAA1513	pogo transposable element with KRAB domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-64966800-3	chr12	64966726	64966926	+	956.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177805, exon 1 of 20)	exon (NM_177805, exon 1 of 20)	1084.0	NM_177805	328108.0	Mm.138465	NM_177805	ENSMUSG00000035614	Togaram1	A430041B07Rik|BC062107|C130034K06|Fam179b|mKIAA0423	TOG array regulator of axonemal microtubules 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-89436054-3	chr10	89435932	89436132	+	746.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001079876, intron 2 of 10)	intron (NM_001079876, intron 2 of 10)	7935.0	NM_001284344	237436.0	Mm.11982	NM_001033331	ENSMUSG00000074802	Gas2l3	8430435B07Rik|Gm240	growth arrest-specific 2 like 3	protein-coding	-1.39239040096365	-1.50706362993767	-1.51637061241093	-1.52401564492204	-1.25712099376264	-1.5050467680107	-1.51426371558223	-1.52264718775774	0.640753741356348	0.855918148133186	1
Merged-chr15-81585254-4	chr15	81585159	81585359	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177821)	promoter-TSS (NM_177821)	-955.0	NM_177821	328572.0	Mm.258397	NM_177821	ENSMUSG00000055024	Ep300	A430090G16|A730011L11|KAT3B|p300|p300 HAT	E1A binding protein p300	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111302150-3	chr12	111302058	111302258	+	586.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_183016, exon 28 of 37)	exon (NM_183016, exon 28 of 37)	31062.0	NM_033603	93835.0	Mm.197639	NM_033603	ENSMUSG00000021278	Amn	-	amnionless	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-107631747-4	chr3	107631636	107631836	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153563)	promoter-TSS (NM_153563)	-26.0	NM_153563	229707.0	Mm.278643	NM_153563	ENSMUSG00000014601	Strip1	6330569M22Rik|6530401O14Rik|Fam40a	striatin interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-121546755-4	chr5	121546657	121546857	+	933.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010765)	promoter-TSS (NM_010765)	-865.0	NM_010765	17165.0	Mm.272206	NM_010765	ENSMUSG00000029454	Mapkapk5	MK5|PRAK	MAP kinase-activated protein kinase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-64518557-2	chr11	64518457	64518657	+	590.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_178870, intron 1 of 1)	intron (NM_178870, intron 1 of 1)	-81883.0	NR_028445	654805.0	Mm.436132	NR_028445		F930015N05Rik	-	RIKEN cDNA F930015N05 gene	ncRNA	0.463927261791758	-0.0462428878907494	0.253770563992465	-0.0541894071852472	0.390586445157976	-0.0452271371496092	-0.0497471196010428	0.101300568519386	-0.496932154034519	0.819414880256655	1
Merged-chr5-143465554-4	chr5	143465461	143465661	+	803.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144915, intron 1 of 14)	ID_B1|SINE|B4	1068.0	NM_144915	231871.0	Mm.469963	NM_144915	ENSMUSG00000039206	Daglb	E330036I19Rik	diacylglycerol lipase, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35666288-3	chr17	35666185	35666385	+	781.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175137, intron 3 of 28)	intron (NM_175137, intron 3 of 28)	1307.0	NM_175137	68915.0	Mm.32002	NM_175137	ENSMUSG00000038838	Vars2	1190004I24Rik|Vars2l|mKIAA1885	valyl-tRNA synthetase 2, mitochondrial	protein-coding	1.75427107670558	0.79416722135325	1.67285635274852	0.768197511651892	1.33555851608926	1.03204378323672	0.782856958587152	1.62653117251136	-0.381823606411504	0.792711730943844	0.998431161219273
Merged-chr3-88835473-1	chr3	88835373	88835573	+	643.0	f1_balb.idr	intron (NM_027389, intron 1 of 31)	CpG	242.0	NM_001242372	76022.0	Mm.126870	NM_027389	ENSMUSG00000054199	Gon4l	1500041I23Rik|2610100B20Rik|3632445O20Rik|5430404N14Rik|AA387005	gon-4-like (C.elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-158161787-4	chr2	158161634	158161834	+	877.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15342.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-128670739-4	chr4	128670624	128670824	+	939.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195130, intron 1 of 14)	intron (NM_001195130, intron 1 of 14)	16022.0	NM_001195130	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69409535-4	chr11	69409438	69409638	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001017426, intron 1 of 22)	intron (NM_001017426, intron 1 of 22)	4137.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150583124-2	chr4	150583024	150583224	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 12 of 22)	intron (NM_001085492, intron 12 of 22)	69050.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-47375214-4	chr14	47375136	47375336	+	822.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145953, intron 1 of 5)	ORR1A2|LTR|ERVL-MaLR	1376.0	NM_001145953	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	1.93535666391536	1.61633583544683	1.37388356243612	1.12490337466249	1.73711104469491	2.4869699091665	2.12288167255695	1.9463567648058	1.60114544702914	0.13031152011604	0.56544727863238
Merged-chr7-141477334-4	chr7	141477176	141477376	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252588, intron 1 of 7)	MIRc|SINE|MIR	896.0	NM_001252588	64540.0	Mm.489619	NM_053082	ENSMUSG00000025511	Tspan4	AI325509|AI746565|D130042I01Rik|NAG-2|Tm4sf7|Tspan-4	tetraspanin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32507305-4	chr2	32507214	32507414	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28045.0	NM_153560	98952.0	Mm.4065	NM_153560	ENSMUSG00000039157	Fam102a	AI426465|C230093N12Rik|Eeig1	family with sequence similarity 102, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-64834699-4	chr14	64834619	64834819	+	953.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177338, intron 6 of 9)	intron (NM_177338, intron 6 of 9)	115138.0	NM_177338	219150.0	Mm.344074	NM_177338	ENSMUSG00000021972	Hmbox1	AI451877|AI604847|F830020C16Rik	homeobox containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-54820865-4	chr12	54820820	54821020	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25258.0	NM_026998	72183.0	Mm.28240	NM_026998	ENSMUSG00000005656	Snx6	2010006G21Rik|2610032J07Rik|2810425K19Rik|AU018928|C85963	sorting nexin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-7880164-4	chr9	7880071	7880271	+	906.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR30D_MM|LTR|ERV1	-7001.0	NM_007464	11796.0	Mm.2026	NM_007464	ENSMUSG00000032000	Birc3	AW107670|Api1|Api2|Birc2|C-IAP2|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF49|cIAP-1|cIAP-2|cIAP1|cIAP2	baculoviral IAP repeat-containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88191277-4	chr3	88191162	88191362	+	983.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13477.0	NR_045997	76642.0	Mm.424420	NR_045997	ENSMUSG00000096935	1700113A16Rik	2210408E11Rik|AA408983	RIKEN cDNA 1700113A16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-49178072-4	chr13	49177980	49178180	+	984.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-9467.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-42487083-4	chr10	42486980	42487180	+	743.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8515.0	NM_145743	215951.0	Mm.89646	NM_145743	ENSMUSG00000038302	Afg1l	CG8520|Lace1	AFG1 like ATPase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-61199772-4	chr19	61199667	61199867	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23458.0	NM_001177513	633057.0	Mm.426097	NM_001177513	ENSMUSG00000094649	Gm7102	EG633057	predicted gene 7102	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-46735448-4	chr13	46735349	46735549	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7600.0	NM_175749	218210.0	Mm.255398	NM_175749	ENSMUSG00000021374	Nup153	B130015D15Rik|C88147	nucleoporin 153	protein-coding	-0.73428542253146	-0.724498605925236	-0.727712433322492	-0.308406471629701	-0.733676550276079	-0.723773189141397	-0.727004212961365	-0.195327852850623	0.441262738279742	0.882069886315526	1
Merged-chr17-34198391-4	chr17	34198284	34198484	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010724, exon 1 of 6)	5' UTR (NM_010724, exon 1 of 6)	189.0	NM_010724	16913.0	Mm.180191	NM_010724	ENSMUSG00000024338	Psmb8	Lmp-7|Lmp7	proteasome (prosome, macropain) subunit, beta type 8 (large multifunctional peptidase 7)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131760271-3	chr1	131760204	131760404	+	947.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177243, intron 12 of 20)	intron (NM_177243, intron 12 of 20)	16282.0	NM_177243	320718.0	Mm.482704	NM_177243	ENSMUSG00000042268	Slc26a9	E030002L01Rik	solute carrier family 26, member 9	protein-coding	-0.247988577793371	0.106900832838563	-0.0689586289934405	-0.242612035797353	-0.247190116467651	-0.234186962953321	-0.0644938939584772	0.372880852869163	0.83792709671488	0.71568955708775	1
Merged-chr1-89891622-4	chr1	89891504	89891704	+	945.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_178119, exon 18 of 18)	3' UTR (NM_178119, exon 18 of 18)	39572.0	NM_010262	14472.0	Mm.204730	NM_010262	ENSMUSG00000034486	Gbx2	D130058E05Rik|Gbx-2|MMoxA|Stra7	gastrulation brain homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-138288943-4	chr1	138288843	138289043	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177397, exon 3 of 3)	3' UTR (NM_177397, exon 3 of 3)	15205.0	NM_177397	338375.0	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-25569108-2	chr9	25569008	25569208	+	909.400024	f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 3 of 7)	RMER1B|Other|Other	87511.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-160212539-4	chr2	160212458	160212658	+	911.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	114936.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-52772617-4	chr2	52772516	52772716	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-30467.0	NM_019667	56324.0	Mm.263639	NM_019667	ENSMUSG00000055371	Stam2	1200004O12Rik|5730456G07Rik|BB145015|Hbp	signal transducing adaptor molecule (SH3 domain and ITAM motif) 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-156803421-4	chr1	156803351	156803551	+	897.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001159965)	TTS (NM_001159965)	-35572.0	NM_028333	72713.0	Mm.389206	NM_028333	ENSMUSG00000033544	Angptl1	2810039D03Rik|ANG3|ANGPT3|ANGY|ARP1	angiopoietin-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91785859-4	chr16	91785750	91785950	+	738.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110276, intron 4 of 15)	intron (NM_001110276, intron 4 of 15)	56479.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75631839-2	chr11	75631739	75631939	+	808.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008916, intron 1 of 11)	intron (NM_008916, intron 1 of 11)	819.0	NM_008916	19062.0	Mm.1458	NM_008916	ENSMUSG00000006127	Inpp5k	C62|Pps|SKIP	inositol polyphosphate 5-phosphatase K	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-70070061-2	chr7	70069961	70070161	+	582.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	267761.0	NR_131145	624549.0	Mm.116344	NR_131144	ENSMUSG00000109097	Gm29683	Gm44536	predicted gene, 29683	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-90685965-4	chr5	90685857	90686057	+	967.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45430.0	NM_001310656	73246.0	Mm.30172	NM_028478	ENSMUSG00000029370	Rassf6	1600016B17Rik	Ras association (RalGDS/AF-6) domain family member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-3705397-2	chr7	3705286	3705486	+	667.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029767, intron 3 of 4)	intron (NM_029767, intron 3 of 4)	1345.0	NM_029767	76846.0	Mm.13944	NM_029767	ENSMUSG00000006333	Rps9	3010033P07Rik|AL022771|AL022885	ribosomal protein S9	protein-coding	2.23464489741921	2.6994506693022	1.55642377320613	2.68654520101091	1.79741177699322	2.00597972458912	2.22138135893159	1.71947962473896	-1.05484461322503	0.249785169268833	0.748108452543049
Merged-chr15-31453673-4	chr15	31453572	31453772	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145852)	promoter-TSS (NM_145852)	17.0	NM_145852	252967.0	Mm.436668	NM_145852	ENSMUSG00000022236	Ropn1l	ASP|AV047578|Akapasp	ropporin 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-121746608-1	chr9	121746508	121746708	+	643.0	f1_balb.idr	intron (NM_010918, intron 12 of 16)	intron (NM_010918, intron 12 of 16)	13335.0	NR_033503	320301.0	Mm.373883	NR_033503		E530011L22Rik	-	RIKEN cDNA E530011L22 gene	ncRNA	1.41028572908395	0.871097279698834	0.854793805075424	0.841947640849096	1.71329493032001	1.31072205890495	1.88137155873889	1.81415119427288	2.69271139083962	0.0507284661084205	0.327931107957343
Merged-chr3-90216022-2	chr3	90215922	90216122	+	902.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001293741, intron 1 of 7)	B2_Mm2|SINE|B2	2307.0	NM_001293741	68328.0	Mm.29355	NM_026677	ENSMUSG00000027935	Rab13	0610007N03Rik|B230212B15Rik	RAB13, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-73596609-4	chr7	73596489	73596689	+	957.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-38194.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35200216-1	chr17	35200116	35200316	+	577.0	f0_balb.idr	exon (NM_001278601, exon 3 of 3)	exon (NM_001278601, exon 3 of 3)	1791.0	NM_013693	21926.0	Mm.1293	NM_013693	ENSMUSG00000024401	Tnf	DIF|TNF-a|TNF-alpha|TNFSF2|TNFalpha|Tnfa|Tnfsf1a|Tnlg1f	tumor necrosis factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-115692620-4	chr3	115692408	115692608	+	981.011902	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22547.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	1.30555798765159	0.798662294651514	1.43050918740284	0.775301460145874	1.59182881080042	1.50114285074052	1.44341153843157	0.777102863919741	0.998809793466789	0.488169378126444	0.933453007555711
Merged-chr15-67147556-3	chr15	67147454	67147654	+	974.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009177, intron 2 of 8)	intron (NM_009177, intron 2 of 8)	29328.0	NM_009177	20442.0	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75588127-4	chr11	75588031	75588231	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008850)	promoter-TSS (NM_008850)	52.0	NM_008850	18738.0	Mm.3128	NM_008850	ENSMUSG00000017781	Pitpna	Pitpn|vb|vibrator	phosphatidylinositol transfer protein, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-95834488-2	chr16	95834388	95834588	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_040485, intron 3 of 3)	B4A|SINE|B4	64225.0	NR_040485	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-116946581-6	chr8	116946465	116946665	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177700, intron 1 of 3)	intron (NM_177700, intron 1 of 3)	3172.0	NM_177700	234776.0	Mm.259736	NM_177700	ENSMUSG00000047388	Atmin	Asciz|gpg6|mKIAA0431	ATM interactor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27242660-4	chr17	27242573	27242773	+	878.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131118, intron 1 of 2)	intron (NR_131118, intron 1 of 2)	5393.0	NR_131118	319720.0	Mm.394996	NR_131118		9630028I04Rik	-	RIKEN cDNA 9630028I04 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-132253311-4	chr2	132253187	132253387	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011045)	promoter-TSS (NM_011045)	-107.0	NM_011045	18538.0	Mm.7141	NM_011045	ENSMUSG00000027342	Pcna	-	proliferating cell nuclear antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-45817089-3	chr1	45816991	45817191	+	779.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028599, intron 13 of 20)	intron (NM_028599, intron 13 of 20)	21925.0	NM_028599	73674.0	Mm.270376	NM_028599	ENSMUSG00000025995	Wdr75	1300003A18Rik|2410118I19Rik|C77608	WD repeat domain 75	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-98370960-4	chr12	98370865	98371065	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	102330.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-86077830-2	chr12	86077730	86077930	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_009368, exon 1 of 7)	exon (NM_009368, exon 1 of 7)	1211.0	NM_009368	21809.0	Mm.3992	NM_009368	ENSMUSG00000021253	Tgfb3	TGF-beta-3|Tgfb-3	transforming growth factor, beta 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-45052999-2	chr2	45052899	45053099	+	678.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355291, intron 2 of 9)	intron (NM_001355291, intron 2 of 9)	-29822.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-25285247-4	chr10	25285136	25285336	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018747, intron 2 of 7)	intron (NM_018747, intron 2 of 7)	13927.0	NM_018747	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24669635-4	chr17	24669543	24669743	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183149)	promoter-TSS (NM_183149)	-44.0	NM_001348231	213753.0	Mm.219581	NM_183149	ENSMUSG00000041130	Zfp598	BC023040|Ntrap|Znf598	zinc finger protein 598	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-62496984-2	chr4	62496884	62497084	+	654.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_138653, exon 7 of 7)	exon (NM_138653, exon 7 of 7)	5216.0	NM_024257	72748.0	Mm.41506	NM_024257	ENSMUSG00000038422	Hdhd3	2810435D12Rik	haloacid dehalogenase-like hydrolase domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-67369816-4	chr7	67369720	67369920	+	805.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357324, intron 1 of 11)	intron (NM_001357324, intron 1 of 11)	3038.0	NM_001291192	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-29290833-3	chr13	29290723	29290923	+	878.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131896, intron 15 of 16)	intron (NR_131896, intron 15 of 16)	274568.0	NR_045075	77920.0	Mm.197051	NR_045073	ENSMUSG00000086363	A330102I10Rik	-	RIKEN cDNA A330102I10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41369348-1	chr19	41369248	41369448	+	620.0	f1_c57bl6.idr	intron (NM_031376, intron 2 of 16)	intron (NM_031376, intron 2 of 16)	15722.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-112279578-4	chr5	112279483	112279683	+	871.0166630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001326590, intron 1 of 5)	intron (NM_001326590, intron 1 of 5)	2892.0	NM_009419	22022.0	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102181963-3	chr12	102181810	102182010	+	835.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172152, intron 2 of 16)	intron (NM_172152, intron 2 of 16)	53183.0	NM_172152	238384.0	Mm.312448	NM_172152	ENSMUSG00000041771	Slc24a4	A930002M03Rik|AW492432|NCKX4	solute carrier family 24 (sodium/potassium/calcium exchanger), member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65885088-4	chr9	65884990	65885190	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001170907)	promoter-TSS (NM_001170907)	83.0	NM_001170907	56404.0	Mm.208379	NM_019797	ENSMUSG00000032386	Trip4	4930558E03Rik|ASC-1|Asc1|BB191711	thyroid hormone receptor interactor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180255232-2	chr1	180255132	180255332	+	601.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001128605, intron 1 of 10)	intron (NM_001128605, intron 1 of 10)	1068.0	NM_001128605	19165.0	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-30570355-4	chr17	30570250	30570450	+	986.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172618, intron 1 of 11)	MTD|LTR|ERVL-MaLR	5937.0	NM_172618	224671.0	Mm.41220	NM_027060	ENSMUSG00000062202	Btbd9	1700023F20Rik|4930402L05|AI464421	BTB (POZ) domain containing 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-127607726-4	chr5	127607613	127607813	+	912.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133895, intron 2 of 7)	intron (NM_133895, intron 2 of 7)	9679.0	NM_133895	100561.0	Mm.28506	NM_133895	ENSMUSG00000029416	Slc15a4	AA987064|AW742963|C130069N12Rik|PHT1|PTR4	solute carrier family 15, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141379747-4	chr7	141379650	141379850	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12410.0	NM_011528	21351.0	Mm.29182	NM_011528	ENSMUSG00000025503	Taldo1	-	transaldolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-21375387-4	chr16	21375274	21375474	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42018.0	NR_131983	76222.0	Mm.86031	NR_131983		Magef1	6430590I03Rik	melanoma antigen family F, 1	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-73633851-3	chr12	73633722	73633922	+	697.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001313977, intron 2 of 14)	L1MC3|LINE|L1	49026.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	1.02369235218484	0.969034042664889	0.937933606163813	0.70960917258238	1.56965528260453	1.90075864936725	0.724070941082718	1.36170776483175	2.32785503365258	0.0996599589017662	0.49093671225075
Merged-chr8-105345765-3	chr8	105345678	105345878	+	886.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177699, intron 1 of 21)	intron (NM_177699, intron 1 of 21)	2192.0	NM_177699	234686.0	Mm.87724	NM_177699	ENSMUSG00000014778	Fhod1	BC017144|FHOS|FHOS1	formin homology 2 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-6627352-2	chr15	6627252	6627452	+	777.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_155272, intron 2 of 6)	intron (NR_155272, intron 2 of 6)	26951.0	NR_155272	102632231.0	Mm.444780	NR_155272		LOC102632231	-	uncharacterized LOC102632231	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-31613230-2	chr15	31613130	31613330	+	931.9166869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356313, intron 5 of 5)	intron (NM_001356313, intron 5 of 5)	11114.0	NM_001356313	68073.0	Mm.119185	NM_026546	ENSMUSG00000039065	Fam173b	A930016P21Rik|AA987072	family with sequence similarity 173, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-87470466-4	chr12	87470405	87470605	+	963.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025507, intron 1 of 13)	MTB_Mm|LTR|ERVL-MaLR	1794.0	NM_025507	66354.0	Mm.271174	NM_025507	ENSMUSG00000021039	Snw1	2310008B08Rik|AW048543|NCoA-62|SKIP|Skiip	SNW domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-59467307-1	chr4	59467207	59467407	+	676.0	f0_balb.idr	Intergenic	Intergenic	-28674.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-90055007-4	chr7	90054916	90055116	+	981.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25857.0	NR_110364	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-51275261-2	chr3	51275161	51275361	+	836.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_023502, intron 4 of 9)	B3|SINE|B2	-1500.0	NR_073429	67746.0	Mm.441177	NR_073429	ENSMUSG00000087440	4930577N17Rik	-	RIKEN cDNA 4930577N17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-70856150-4	chr6	70856051	70856251	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001313918, intron 1 of 2)	Lx9|LINE|L1	11636.0	NM_001313918	13666.0	Mm.247167	NM_010121	ENSMUSG00000031668	Eif2ak3	Pek|Perk	eukaryotic translation initiation factor 2 alpha kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-16105810-4	chr1	16105730	16105930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133832)	promoter-TSS (NM_133832)	-52.0	NM_133832	98711.0	Mm.274376	NM_133832	ENSMUSG00000025921	Rdh10	3110069K09Rik|4921506A21Rik|AI875664|AW549993|D1Ertd762e|m366Asp	retinol dehydrogenase 10 (all-trans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-35043068-2	chr7	35042968	35043168	+	703.400024	f1_balb.idr|f1_c57bl6.idr	intron (NM_008820, intron 13 of 14)	intron (NM_008820, intron 13 of 14)	13498.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-100434036-3	chr9	100433885	100434085	+	845.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28|LTR|ERVL	52488.0	NM_001033543	213208.0	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-45408808-3	chr16	45408741	45408941	+	754.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010818, intron 1 of 5)	intron (NM_010818, intron 1 of 5)	212.0	NM_001358443	17470.0	Mm.245851	NM_010818	ENSMUSG00000022661	Cd200	Mox2|OX2	CD200 antigen	protein-coding	-0.294083384950798	-0.277963382818132	0.430175288204581	-0.287290034214969	-0.293070061983337	-0.276782190008417	0.44311158986884	-0.286577643912737	0.0410571026119648	0.987250810110592	1
Merged-chr9-108002543-4	chr9	108002430	108002630	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013785)	promoter-TSS (NM_013785)	-118.0	NM_013785	27399.0	Mm.276155	NM_013785	ENSMUSG00000032594	Ip6k1	1200016D08Rik|AU022776|Ihpk1|InsP6|InsP6k1|Itpk6	inositol hexaphosphate kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-94870511-3	chr11	94870421	94870621	+	714.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20928.0	NM_001205037	432591.0	Mm.370372	NM_001205037		Gm11544	-	predicted gene 11544	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102321453-2	chr12	102321321	102321521	+	614.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177620, intron 2 of 9)	intron (NM_177620, intron 2 of 9)	37780.0	NM_001161365	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	1.61576499111265	1.95121075614161	1.03954002083024	2.11400641547746	1.50491147934657	2.18686293365669	1.04418341200628	1.58084749778857	-0.283412408021575	0.810589693071667	0.998431161219273
Merged-chr5-123907157-4	chr5	123907110	123907310	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026603)	promoter-TSS (NM_026603)	-65.0	NM_026603	68184.0	Mm.28549	NM_026603	ENSMUSG00000023106	Denr	1500003K04Rik	density-regulated protein	protein-coding	6.63011182650284	5.88717113569455	6.39260555068715	6.37384836337222	6.28536499726031	5.70211824192809	5.73292402002784	5.77601464213448	-0.490165810147841	0.0458441021257042	0.308778557618375
Merged-chr3-142700973-4	chr3	142700886	142701086	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001293560)	promoter-TSS (NM_001293560)	-62.0	NM_173763	229905.0	Mm.289643	NM_173763	ENSMUSG00000040213	Kyat3	Ccbl2|KATIII|Kat3	kynurenine aminotransferase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191180617-4	chr1	191180536	191180736	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007498, intron 1 of 3)	intron (NM_007498, intron 1 of 3)	2697.0	NM_007498	11910.0	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-3535486-4	chr11	3535383	3535583	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159284, intron 3 of 21)	intron (NM_001159284, intron 3 of 21)	3809.0	NM_013870	29856.0	Mm.188516	NM_013870	ENSMUSG00000020439	Smtn	smsmo	smoothelin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-38742300-4	chr16	38742213	38742413	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285793)	promoter-TSS (NM_001285793)	54.0	NM_001285793	56375.0	Mm.182377	NM_019804	ENSMUSG00000022793	B4galt4	9130402O08Rik|B4galt-IV|b4Gal-T4|beta4Gal-T4|beta4GalT-IV	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102158836-1	chr12	102158736	102158936	+	950.0	f0_balb.idr	intron (NM_172152, intron 2 of 16)	intron (NM_172152, intron 2 of 16)	30109.0	NM_172152	238384.0	Mm.312448	NM_172152	ENSMUSG00000041771	Slc24a4	A930002M03Rik|AW492432|NCKX4	solute carrier family 24 (sodium/potassium/calcium exchanger), member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32631889-4	chr2	32631788	32631988	+	914.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198791, intron 5 of 6)	intron (NM_001198791, intron 5 of 6)	2388.0	NM_021515	11636.0	Mm.29189	NM_021515	ENSMUSG00000026817	Ak1	Ak-1|B430205N08Rik	adenylate kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-31336828-4	chr15	31336717	31336917	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027496, intron 1 of 3)	(TG)n|Simple_repeat|Simple_repeat	30942.0	NM_001357923	67434.0	Mm.102470	NM_026153	ENSMUSG00000022237	Ankrd33b	0610012A05Rik|3021401C12Rik|5730557B15Rik	ankyrin repeat domain 33B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-82947148-2	chr13	82947058	82947258	+	727.5	f0_balb.idr|f0_c57.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-248825.0	NR_039537	100628621.0		NR_039537	ENSMUSG00000106655	Mir3961	mmu-mir-3961	microRNA 3961	ncRNA	0.163623084825705	0.056227476239829	0.330933399832607	0.187538522678309	0.370539193840319	0.0571040737824496	0.206077884830817	0.417536422841103	0.756474848303125	0.68990739379461	1
Merged-chr16-11203900-2	chr16	11203800	11204000	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025546)	promoter-TSS (NM_025546)	517.0	NR_038156	69918.0	Mm.440400	NR_038154		2610020C07Rik	-	RIKEN cDNA 2610020C07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55841722-3	chr19	55841556	55841756	+	762.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_138565, intron 4 of 15)	intron (NR_138565, intron 4 of 15)	-53665.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-102671161-4	chr15	102671060	102671260	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026468)	promoter-TSS (NM_026468)	-113.0	NM_026468	67942.0	Mm.10314	NM_026468	ENSMUSG00000062683	Atp5g2	1810041M08Rik	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C2 (subunit 9)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-12537973-2	chr1	12537873	12538073	+	575.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus4|LINE|L1	111987.0	NR_105759	102465961.0		NR_105759	ENSMUSG00000098555	Mir6341	Gm27262|mmu-mir-6341	microRNA 6341	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-55089022-1	chr1	55088922	55089122	+	680.0	f1_balb.idr	promoter-TSS (NM_001356512)	promoter-TSS (NM_001356512)	-779.0	NM_001356512	15510.0	Mm.1777	NM_010477	ENSMUSG00000025980	Hspd1	60kDa|CPN60|HSP-60|HSP-65|Hsp60	heat shock protein 1 (chaperonin)	protein-coding	2.64874449318381	1.59850946039789	2.87262446293355	3.26197510969313	2.46654714265924	3.18294611678923	2.89502777554315	2.80632789249771	0.228804483472994	0.765666378253714	0.998431161219273
Merged-chr5-114928438-4	chr5	114928309	114928509	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359945, intron 2 of 5)	intron (NM_001359945, intron 2 of 5)	5169.0	NM_001359945	231655.0	Mm.95479	NM_145209	ENSMUSG00000041827	Oasl1	7530414C13Rik|oasl9	2'-5' oligoadenylate synthetase-like 1	protein-coding	4.41730433117339	4.82689382866939	5.26124720459864	4.8919050090333	5.02849153463094	5.24493134748491	5.74923791446556	5.12406611712523	0.515842804794828	0.119706174453664	0.542521284724901
Merged-chr5-97062305-4	chr5	97062197	97062397	+	984.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080708, intron 11 of 15)	intron (NM_080708, intron 11 of 15)	49299.0	NM_001359910	231474.0	Mm.332505	NM_198422	ENSMUSG00000055725	Paqr3	6330415A20Rik|AY424292|RKTG	progestin and adipoQ receptor family member III	protein-coding	1.04171176636404	0.486116857468986	0.477928053439357	1.02219001585435	1.13695661449709	0.487958546278744	0.479736820237765	1.02948207597833	0.175136142689699	0.921483652073462	1
Merged-chr3-89422806-4	chr3	89422773	89422973	+	783.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011368, intron 2 of 12)	intron (NM_011368, intron 2 of 12)	1252.0	NM_001113331	20416.0	Mm.86595	NM_011368	ENSMUSG00000042626	Shc1	Shc|ShcA|p66|p66shc	src homology 2 domain-containing transforming protein C1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-152759545-2	chr3	152759445	152759645	+	674.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025662, intron 9 of 10)	(TG)n|Simple_repeat|Simple_repeat	45445.0	NM_025662	329777.0	Mm.331447	NM_025662	ENSMUSG00000039047	Pigk	3000001O05Rik|Gm38470|PIG-K	phosphatidylinositol glycan anchor biosynthesis, class K	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-17581473-4	chr17	17581366	17581566	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172827, intron 1 of 17)	intron (NM_172827, intron 1 of 17)	43023.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	5.36369214934443	5.69431669224449	5.53444660509907	5.03644075268064	4.80368937344434	5.78197844518489	5.16593103449208	5.28569803115647	-0.149293806705817	0.62977604863305	0.981201918729827
Merged-chr6-5163719-3	chr6	5163627	5163827	+	889.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_181595, exon 16 of 16)	3' UTR (NM_181595, exon 16 of 16)	30219.0	NM_011134	18979.0	Mm.237657	NM_011134	ENSMUSG00000002588	Pon1	Pon	paraoxonase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-73059879-4	chr14	73059807	73060007	+	831.729187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10793.0	NM_001162412	70086.0	Mm.158324	NM_133720	ENSMUSG00000033470	Cysltr2	2300001H05Rik|CYSLT2R|Cltr2|Cyslt2	cysteinyl leukotriene receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-104248532-4	chr8	104248425	104248625	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021028)	promoter-TSS (NM_021028)	33.0	NR_045642	57813.0	Mm.183110	NM_021028	ENSMUSG00000035824	Tk2	AU024611|mt-TK	thymidine kinase 2, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-82447539-1	chr1	82447439	82447639	+	543.0	f1_balb.idr	Intergenic	Intergenic	108490.0	NM_001122685	76867.0	Mm.226994	NM_029777	ENSMUSG00000026142	Rhbdd1	4930418P06Rik|RRP4|mRHBDD1	rhomboid domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-134567700-4	chr5	134567607	134567807	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER44D|DNA|TcMar-Tigger	-4369.0	NR_106087	102465708.0		NR_106087	ENSMUSG00000106323	Mir7228	mmu-mir-7228	microRNA 7228	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59805969-2	chr15	59805869	59806069	+	609.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11010.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-36088399-1	chr13	36088299	36088499	+	627.0	f0_balb.idr	intron (NM_201358, intron 2 of 2)	intron (NM_201358, intron 2 of 2)	28958.0	NM_201358	380840.0	Mm.390576	NM_201358	ENSMUSG00000046573	Lyrm4	BC034664|Gm903	LYR motif containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-40660488-3	chr19	40660351	40660551	+	978.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009848, intron 1 of 9)	intron (NM_009848, intron 1 of 9)	681.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70782435-2	chr14	70782317	70782517	+	664.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5b|LINE|L1	8036.0	NM_010071	13449.0	Mm.243323	NM_010071	ENSMUSG00000022102	Dok2	DokR|Frip|dok-R	docking protein 2	protein-coding	2.13497871692276	1.98962286225047	1.91519727313857	1.35081769102818	1.4358694740517	1.4466986356336	0.978512828972304	0.961645174756747	-2.2921662310742	0.060409889129557	0.3636109614263
Merged-chr1-106961207-1	chr1	106961107	106961307	+	554.0	f0_balb.idr	Intergenic	B3|SINE|B2	-19777.0	NM_172852	241196.0	Mm.110886	NM_172852	ENSMUSG00000048775	Serpinb13	5430417G24|HUR7|HURPIN|PI13|headpin	serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), member 13	protein-coding	1.46772697348263	1.02246261359789	1.51401175399002	1.12281139277147	1.07888385743605	1.34721780467055	1.00144955714331	0.978048155521514	-0.868683180495936	0.494670534462756	0.935679785535167
Merged-chr7-55962454-4	chr7	55962386	55962586	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023647)	promoter-TSS (NM_023647)	7.0	NM_001256133	93790.0	Mm.37249	NM_023647	ENSMUSG00000030452	Nipa2	2600017P10Rik|3830408P04Rik|AB041581	non imprinted in Prader-Willi/Angelman syndrome 2 homolog (human)	protein-coding	5.57368607083426	5.13496798606035	5.12825911139527	5.41610728351713	5.42918303966854	4.75710180451899	4.31276463114818	4.796152457928	-0.512858219501931	0.126926509992648	0.557473451704825
Merged-chr14-54575822-2	chr14	54575727	54575927	+	995.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010590, intron 1 of 7)	CpG	1834.0	NM_010590	16475.0	Mm.100253	NM_010590	ENSMUSG00000022178	Ajuba	Jub	ajuba LIM protein	protein-coding	0.693590073995237	0.741518499674902	1.75309627649522	1.85465981374615	1.18627141594466	0.744937180154679	0.729575528373969	1.70337792847198	-0.766223308296339	0.619727510185797	0.978663311075481
Merged-chr11-43387429-2	chr11	43387329	43387529	+	863.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12968.0	NR_029558	387164.0		NR_029558	ENSMUSG00000065601	Mir146	Mirn146|miR-146a|mmu-mir-146	microRNA 146	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125331834-2	chr6	125331722	125331922	+	790.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_011324, intron 2 of 11)	intron (NM_011324, intron 2 of 11)	10482.0	NM_011324	20276.0	Mm.144114	NM_011324	ENSMUSG00000030340	Scnn1a	ENaC|SCNEA|Scnn1|mENaC	sodium channel, nonvoltage-gated 1 alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-129232376-1	chr6	129232276	129232476	+	1000.0	f1_c57bl6.idr	TTS (NR_040265)	TTS (NR_040265)	5669.0	NR_040265	76432.0	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	1.35143807322975	0.988874589630873	0.293470382007114	0.634449590061881	0.276324070076663	0.528452655351827	0.295474806913347	0.287652627415163	-3.65349626712451	0.0508810838760168	1
Merged-chr2-117444925-4	chr2	117444833	117445033	+	916.2333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-102056.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-102002993-3	chr15	102002909	102003109	+	794.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031170, intron 1 of 8)	intron (NM_031170, intron 1 of 8)	1333.0	NM_031170	16691.0	Mm.358618	NM_031170	ENSMUSG00000049382	Krt8	AA960620|AL022697|AU019895|Card2|EndoA|K8|Krt-2.8|Krt2-8	keratin 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-112000628-4	chr10	112000524	112000724	+	839.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER44B|DNA|TcMar-Tigger	-3360.0	NM_028608	73690.0	Mm.173790	NM_028608	ENSMUSG00000056888	Glipr1	2410114O14Rik|RTVP-1|RTVP1|mRTVP-1	GLI pathogenesis-related 1 (glioma)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-51695085-4	chr12	51694920	51695120	+	875.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001329698, intron 1 of 5)	intron (NM_001329698, intron 1 of 5)	-3106.0	NM_052973	94186.0	Mm.65979	NM_052973	ENSMUSG00000020954	Strn3	Gs2na|SG2NA	striatin, calmodulin binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-79415081-4	chr8	79414978	79415178	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15610.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-174085197-4	chr2	174085097	174085297	+	975.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001102424, intron 2 of 8)	intron (NM_001102424, intron 2 of 8)	8146.0	NM_001102423	228960.0	Mm.277977	NM_172675	ENSMUSG00000027522	Stx16	4930401D03|5430410K23Rik|6330500A18Rik|AI648908|AW553605|Syn16	syntaxin 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-99269253-3	chr5	99269158	99269358	+	832.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16331.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	-1.20406370813143	-1.56956373024278	-1.57884638916872	-1.58647144159385	-1.598104728449	-1.56755213932999	-1.57674499865798	-1.58510656085539	-1.70745470802464	0.626337835847419	1
Merged-chr6-127453672-4	chr6	127453577	127453777	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346512)	promoter-TSS (NM_001346512)	50.0	NM_001346512	101187.0	Mm.110818	NM_181402	ENSMUSG00000037997	Parp11	5330431N24Rik|AI851877|ARTD11|HIN1L|PARP-11	poly (ADP-ribose) polymerase family, member 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-107725170-4	chr5	107725018	107725218	+	735.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010278)	promoter-TSS (NM_010278)	687.0	NM_001267621	14581.0	Mm.2078	NM_010278	ENSMUSG00000029275	Gfi1	AW495828|Gfi-1|Pal-1|Pal1	growth factor independent 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-96738128-2	chr15	96738028	96738228	+	656.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38400.0	NM_175121	67760.0	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-75917925-3	chr18	75917829	75918029	+	685.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145356, intron 2 of 4)	intron (NM_145356, intron 2 of 4)	97751.0	NM_145356	207259.0	Mm.159332	NM_145356	ENSMUSG00000044646	Zbtb7c	B230208J24Rik|Kr-pok|Zbtb36	zinc finger and BTB domain containing 7C	protein-coding	4.80186933770907	4.85858813495787	5.178872562341	4.00336435103317	4.40626842941728	3.98366913010365	5.08595472197046	3.63626033222644	-0.476502942674764	0.277816197412865	0.781558122642907
Merged-chr11-87020006-2	chr11	87019906	87020106	+	743.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-26244.0	NM_001005341	77864.0	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-81076577-4	chr5	81076491	81076691	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198702, intron 2 of 27)	intron (NM_198702, intron 2 of 27)	54998.0	NM_198702	319387.0	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-30776462-4	chr16	30776358	30776558	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	176735.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	2.44450408954574	1.81334852377752	2.51625638522524	1.10425639470319	2.08172858311006	1.42707483519924	2.16362396063074	1.10807311886462	-0.806059934123366	0.477680136393249	0.927980290875356
Merged-chr2-165917755-3	chr2	165917675	165917875	+	989.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32937.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-132755961-3	chr3	132755877	132756077	+	759.666626	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163455, intron 22 of 25)	intron (NM_001163455, intron 22 of 25)	71833.0	NM_001163455	271981.0	Mm.257864	NM_173032	ENSMUSG00000028030	Tbck	1700120J03Rik|9430001M19|A630047E20Rik|C030007I09Rik|Tbckl	TBC1 domain containing kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-161920532-2	chr1	161920432	161920632	+	707.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43850.0	NM_001357402	226551.0	Mm.170002	NM_172645	ENSMUSG00000040297	Suco	4732491B11|AI848100|AU016931|Opt	SUN domain containing ossification factor	protein-coding	1.82072656510407	2.45388648098172	1.12803276209661	1.32840705123647	1.59609133917141	2.18548481159343	1.72736557711246	1.93232718789694	0.204329006538095	0.850737245197722	0.998431161219273
Merged-chr7-67371582-4	chr7	67371476	67371676	+	898.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357324, intron 1 of 11)	intron (NM_001357324, intron 1 of 11)	1282.0	NM_001291192	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-143661017-1	chr6	143660917	143661117	+	575.0	f0_balb.idr	Intergenic	RMER19C|LTR|ERVK	-9729.0	NR_045732	73425.0	Mm.417844	NR_045732	ENSMUSG00000086887	1700060C16Rik	-	RIKEN cDNA 1700060C16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-22142078-2	chr3	22141978	22142178	+	703.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030732, intron 1 of 15)	intron (NM_030732, intron 1 of 15)	65426.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-16409535-2	chr15	16409435	16409635	+	651.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13A2|LTR|ERVK	-368566.0	NM_009869	12565.0	Mm.439758	NM_009869	ENSMUSG00000025370	Cdh9	-	cadherin 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-96200425-2	chr16	96200325	96200525	+	576.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015825)	promoter-TSS (NM_015825)	-45.0	NM_015825	50795.0	Mm.28638	NM_015825	ENSMUSG00000040666	Sh3bgr	5430437A18Rik	SH3-binding domain glutamic acid-rich protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-15924594-3	chr19	15924497	15924697	+	971.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001205339)	promoter-TSS (NM_001205339)	25.0	NM_001205339	107272.0	Mm.289936	NM_177420	ENSMUSG00000024640	Psat1	D8Ertd814e|EPIP|PSA|Psat	phosphoserine aminotransferase 1	protein-coding	2.07016331121229	1.24830232319022	1.21318096295885	1.36024592845957	2.08900085529745	1.0122420911859	1.93451035648932	1.36683744982958	0.443691405376239	0.710377999091766	0.998431161219273
Merged-chr13-98815324-4	chr13	98815231	98815431	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_172591, exon 1 of 26)	5' UTR (NM_172591, exon 1 of 26)	118.0	NM_172591	218503.0	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-74466683-2	chr13	74466583	74466783	+	643.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27267.0	NM_146231	235956.0		NM_146231	ENSMUSG00000069208	Zfp825	-	zinc finger protein 825	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91481767-2	chr2	91481635	91481835	+	740.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172668, intron 15 of 37)	B1_Mus1|SINE|Alu	24204.0	NM_001145857	228357.0	Mm.275149	NM_172668	ENSMUSG00000027253	Lrp4	6430526J12Rik|D230026E03|Megf7|mdig	low density lipoprotein receptor-related protein 4	protein-coding	0.259735888574772	0.391032474009342	-0.100187756063222	0.517625900257821	-0.109332252304965	-0.0941601826813041	-0.0991034207468708	-0.103316933245836	-3.84577132758825	0.0892398625051229	1
Merged-chr3-97204072-4	chr3	97203972	97204172	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_029933, exon 10 of 10)	3' UTR (NM_029933, exon 10 of 10)	23292.0	NM_029933	77578.0	Mm.226175	NM_029933	ENSMUSG00000038256	Bcl9	2610202E01Rik|8030475K17Rik|A330041G23Rik|Gm130	B cell CLL/lymphoma 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30562813-3	chr7	30562681	30562881	+	976.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_170760)	promoter-TSS (NM_170760)	403.0	NM_025498	66340.0	Mm.86557	NM_025498	ENSMUSG00000036835	Psenen	1700023M09Rik|Pen-2	presenilin enhancer gamma secretase subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-57354598-4	chr16	57354500	57354700	+	880.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	1323.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-104494277-2	chr2	104494177	104494377	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001145824, exon 1 of 16)	5' UTR (NM_001145824, exon 1 of 16)	212.0	NM_010434	15259.0	Mm.257925	NM_010434	ENSMUSG00000027177	Hipk3	DYRK6|FIST3|PKY|mir-1902	homeodomain interacting protein kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-86189272-4	chr15	86189168	86189368	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3127.0	NM_145475	223753.0	Mm.222685	NM_145475	ENSMUSG00000035891	Cerk	AI848610|D330016D08Rik|mKIAA1646	ceramide kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-120575394-2	chr2	120575294	120575494	+	960.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009222, intron 1 of 7)	B3A|SINE|B2	7723.0	NM_009222	20619.0	Mm.245715	NM_009222	ENSMUSG00000027287	Snap23	23kDa|AA408749|SNAP-23|Sndt|Syndet	synaptosomal-associated protein 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-89162554-4	chr18	89162440	89162640	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34887.0	NM_178687	225825.0	Mm.139293	NM_178687	ENSMUSG00000034028	Cd226	BC051526|DNAM-1|DNAM1|Pta1|TLiSA1	CD226 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-69691225-4	chr3	69691122	69691322	+	927.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-30833.0	NM_133787	97112.0	Mm.21062	NM_133787	ENSMUSG00000027787	Nmd3	C87860	NMD3 ribosome export adaptor	protein-coding	1.719877114334	2.18749603403827	2.10917708154842	2.31954782423624	1.45654944717713	1.15341018129225	1.12905463754363	2.24832886454293	-1.38669331601402	0.210804528968058	0.700323931057359
Merged-chr12-3890478-2	chr12	3890378	3890578	+	707.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007872, intron 6 of 22)	intron (NM_007872, intron 6 of 22)	-1266.0	NM_153743	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-11530949-1	chr2	11530849	11531049	+	765.0	f1_balb.idr	intron (NM_001177758, intron 1 of 14)	B1_Mur3|SINE|Alu	22980.0	NM_001177758	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-42501421-2	chr10	42501321	42501521	+	962.3333130000001	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017472)	promoter-TSS (NM_017472)	-633.0	NM_017472	54198.0	Mm.277870	NM_017472	ENSMUSG00000019804	Snx3	SDP3	sorting nexin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-86509600-4	chr1	86509527	86509727	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16930.0	NR_153834	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-67463968-4	chr13	67463863	67464063	+	961.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-12339.0	NM_177712	238692.0	Mm.486478	NM_177712	ENSMUSG00000069206	Zfp874a	C330011K17Rik|Rslcan15|Zfp874	zinc finger protein 874a	protein-coding	3.14345657462328	4.00236182256393	2.97953142376443	3.99973234287853	3.98271569990668	3.46410567743934	4.13628589669117	2.9055663908325	0.143531755228497	0.800302447310296	0.998431161219273
Merged-chr2-125731941-4	chr2	125731858	125732058	+	975.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7810.0	NM_199022	271849.0	Mm.425101	NM_199022	ENSMUSG00000035109	Shc4	6230417E10Rik|9930029B02Rik|Gm685|RaLP	SHC (Src homology 2 domain containing) family, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-32694415-4	chr9	32694310	32694510	+	939.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1632.0	NM_011808	23871.0	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-38309110-4	chr5	38309017	38309217	+	741.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10392.0	NM_013503	13492.0	Mm.167154	NM_013503	ENSMUSG00000039358	Drd5	D5R|Drd-5|Drd1b|Gpcr1	dopamine receptor D5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-93964011-2	chr10	93963911	93964111	+	735.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029764)	promoter-TSS (NR_029764)	-148.0	NR_029764	723908.0		NR_029764	ENSMUSG00000065607	Mir331	Mirn331|mmu-mir-331	microRNA 331	ncRNA	-0.953721354153451	-1.41025554057125	-1.42001056191158	-1.42802362688808	-1.44024889148474	-1.40814158675276	-1.41780223890411	-1.42658929208844	-2.11310844444413	0.543369238581748	1
Merged-chr7-35423296-3	chr7	35423199	35423399	+	830.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153799, intron 11 of 19)	intron (NR_153799, intron 11 of 19)	-25793.0	NM_001199015	30962.0	Mm.45874	NM_021291	ENSMUSG00000030492	Slc7a9	CSNU3	solute carrier family 7 (cationic amino acid transporter, y+ system), member 9	protein-coding	3.45271407986822	2.82066569194547	3.89574271620591	4.15051470999694	1.16170519211928	1.36156456369072	1.30183706484401	2.36805683902571	-3.98895217829415	1.22252936146828e-05	0.00054730997309315
Merged-chr2-34600033-3	chr2	34599929	34600129	+	858.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290625, intron 10 of 11)	intron (NM_001290625, intron 10 of 11)	155203.0	NM_001356441	66691.0	Mm.156452	NM_025709	ENSMUSG00000026867	Gapvd1	2010005B09Rik|4432404J10Rik|AW108497|Gapex-5|RAP6|RME-6|mKIAA1521	GTPase activating protein and VPS9 domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-145075851-1	chr6	145075751	145075951	+	734.5	f0_balb.idr	intron (NM_007532, intron 1 of 10)	intron (NM_007532, intron 1 of 10)	306.0	NM_007532	12035.0	Mm.4606	NM_007532	ENSMUSG00000030268	Bcat1	BCATc|Eca39	branched chain aminotransferase 1, cytosolic	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-80835076-4	chr12	80835051	80835251	+	980.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178682, intron 2 of 5)	Lx5|LINE|L1	44619.0	NM_001242419	217684.0	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	0.721884796289955	0.487126933472535	-0.188508039700202	-0.193162848582141	-0.199787547509141	-0.181168883284123	-0.187182266852689	-0.192347719308875	-3.99975860075865	0.0961667822889603	1
Merged-chr5-129997686-1	chr5	129997586	129997786	+	540.0	f1_c57bl6.idr	intron (NM_001357025, intron 7 of 10)	intron (NM_001357025, intron 7 of 10)	5363.0	NM_010368	110006.0	Mm.3317	NM_010368	ENSMUSG00000025534	Gusb	AI747421|Gur|Gus|Gus-r|Gus-s|Gus-t|Gus-u|Gut|asd|g	glucuronidase, beta	protein-coding	1.28802328575634	0.928561963436465	1.4171592648177	1.15669165262424	1.30044483959696	0.728369534639613	0.718203721049117	1.03439792349971	-1.08524718047886	0.448968750631777	0.91525406604412
Merged-chr8-122864803-2	chr8	122864672	122864872	+	706.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_007662, intron 10 of 13)	intron (NM_007662, intron 10 of 13)	16398.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	-1.84354474832578	-1.81325489144778	-1.53416061964661	-1.82993901100912	-1.8414184563789	-1.81126990231468	-1.82034119297928	-1.82859217979378	-1.52252619601533	0.665276690233728	1
Merged-chr11-35771311-2	chr11	35771211	35771411	+	756.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145962, intron 1 of 6)	PB1D9|SINE|Alu	1816.0	NM_145962	211347.0	Mm.255044	NM_145962	ENSMUSG00000018846	Pank3	-	pantothenate kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-91882248-2	chr13	91882148	91882348	+	610.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009027, exon 15 of 15)	3' UTR (NM_009027, exon 15 of 15)	-5363.0	NM_198415	76722.0	Mm.316438	NM_198415	ENSMUSG00000021622	Ckmt2	2300008A19Rik|ScCKmit	creatine kinase, mitochondrial 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-6138811-3	chr8	6138715	6138915	+	861.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1033528.0	NM_011388	20494.0	Mm.3500	NM_011388	ENSMUSG00000023073	Slc10a2	9130221J18Rik|AI605518|ASBT|IBAT|ISBT	solute carrier family 10, member 2	protein-coding	-1.20406370813143	-1.56956373024278	-1.57884638916872	-1.58647144159385	-1.598104728449	-1.56755213932999	-1.57674499865798	-1.58510656085539	-1.70745470802464	0.626337835847419	1
Merged-chr6-97299526-3	chr6	97299417	97299617	+	947.111145	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 20 of 23)	ORR1F|LTR|ERVL-MaLR	-46737.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	2.24676311095994	1.97081614596115	1.89759408008884	2.08827957784773	1.25466400456985	1.11863573063916	2.96766992841155	1.06202991217293	-0.280091747987846	0.807208177075585	0.998431161219273
Merged-chr1-34389400-4	chr1	34389288	34389488	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43811.0	NR_039562	100628580.0		NR_039562	ENSMUSG00000092852	Mir5103	mir-5103|mmu-mir-5103|mu-mir-5103	microRNA 5103	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-114842040-4	chr6	114841945	114842145	+	664.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253718, intron 19 of 19)	intron (NM_001253718, intron 19 of 19)	79776.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-37860541-4	chr1	37860443	37860643	+	953.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290720, intron 1 of 17)	ORR1B2|LTR|ERVL-MaLR	4539.0	NM_207228	211484.0	Mm.332756	NM_207228	ENSMUSG00000060771	Tsga10	4933432N21Rik|AI843383|Gm217|Mtsga10	testis specific 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-75906573-1	chr15	75906473	75906673	+	574.0	f1_balb.idr	intron (NM_029663, intron 1 of 9)	(CA)n|Simple_repeat|Simple_repeat	2771.0	NM_001285433	66656.0	Mm.258927	NM_023240	ENSMUSG00000055762	Eef1d	EF-1-delta	eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-70874597-4	chr6	70874483	70874683	+	845.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010121, intron 2 of 16)	intron (NM_010121, intron 2 of 16)	30068.0	NM_001313918	13666.0	Mm.247167	NM_010121	ENSMUSG00000031668	Eif2ak3	Pek|Perk	eukaryotic translation initiation factor 2 alpha kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135416613-4	chr4	135416495	135416695	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_030481)	promoter-TSS (NR_030481)	38.0	NR_030481	735285.0		NR_030481	ENSMUSG00000076123	Mir700	Mirn700|mir-700|mmu-mir-700	microRNA 700	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-20531893-3	chr10	20531771	20531971	+	845.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013875, intron 2 of 12)	intron (NM_013875, intron 2 of 12)	16457.0	NM_001347366	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-49246073-4	chr7	49245999	49246199	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175272)	promoter-TSS (NM_175272)	-90.0	NM_175272	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-6354731-1	chr7	6354631	6354831	+	542.0	f1_c57bl6.idr	Intergenic	Intergenic	-8577.0	NM_001025163	330463.0	Mm.136456	NM_177888	ENSMUSG00000055150	Zfp78	A330079D15|KRAB12|Zfp77	zinc finger protein 78	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-84451155-4	chr12	84451093	84451293	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173756)	promoter-TSS (NM_173756)	-169.0	NM_134042	104776.0	Mm.247510	NM_134042	ENSMUSG00000021238	Aldh6a1	1110038I05Rik|Mmsdh	aldehyde dehydrogenase family 6, subfamily A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126493388-2	chr8	126493288	126493488	+	775.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-18323.0	NM_001159907	212728.0	Mm.482479	NM_001159907	ENSMUSG00000090290	Tarbp1	Gm17296|Gm179	TAR RNA binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-116582976-4	chr10	116582859	116583059	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1448.0	NM_001359249	72068.0	Mm.351553	NM_028082	ENSMUSG00000020166	Cnot2	2600016M12Rik|2810470K03Rik|AA537049|AA959607|AW557563|C79650	CCR4-NOT transcription complex, subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-29852687-3	chr5	29852591	29852791	+	913.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-116755.0	NR_028426	332993.0	Mm.473746	NR_028426		Gm5129	EG332993	predicted gene 5129	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-66351210-2	chr9	66351110	66351310	+	709.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145617, intron 1 of 77)	intron (NM_145617, intron 1 of 77)	760.0	NM_145617	235439.0	Mm.244179	NM_145617	ENSMUSG00000038664	Herc1	2810449H11Rik|B230218H07|D130015N03Rik|tbl	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-65822814-2	chr6	65822714	65822914	+	673.299988	f1_balb.idr|f1_c57bl6.idr	intron (NM_029549, intron 2 of 10)	intron (NM_029549, intron 2 of 10)	43852.0	NM_029549	70779.0	Mm.263355	NM_027547	ENSMUSG00000029913	Prdm5	4432417F03Rik|6530401I24Rik|AI197291|E130112L17Rik|PFM2	PR domain containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-112873771-4	chr12	112873684	112873884	+	984.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12868.0	NM_019925	56696.0	Mm.20455	NM_019925	ENSMUSG00000021298	Gpr132	G2a	G protein-coupled receptor 132	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-20081340-2	chr14	20081240	20081440	+	812.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026209, intron 1 of 1)	intron (NM_026209, intron 1 of 1)	1832.0	NM_026209	67509.0	Mm.292423	NM_026209	ENSMUSG00000045107	Saysd1	1810063B07Rik|4930488P03Rik	SAYSVFN motif domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-73326660-4	chr11	73326556	73326756	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2019.0	NM_023113	11484.0	Mm.293574	NM_023113	ENSMUSG00000020774	Aspa	Acy-2|Acy2|nur7	aspartoacylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-30947919-3	chr1	30947771	30947971	+	645.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011200, intron 1 of 5)	intron (NM_011200, intron 1 of 5)	1839.0	NR_002688	433406.0	Mm.389003	NR_002688		Gm13363	-	predicted gene 13363	pseudo	-1.31349849087795	-1.28274354783242	-1.29349452597086	-1.3023256995151	-1.3130151546297	-1.28041376602105	-0.694015972326031	-1.30074492367298	2.57396649482007	0.456321314346772	1
Merged-chr13-67723379-1	chr13	67723279	67723479	+	968.0	f1_c57bl6.idr	intron (NM_145622, intron 1 of 3)	intron (NM_145622, intron 1 of 3)	5794.0	NM_145622	235907.0	Mm.440123	NM_145622	ENSMUSG00000071281	Zfp65	KRAB5|Zfp71-rs1|pz114	zinc finger protein 65	protein-coding	1.54978435631101	3.01175532281725	1.71388606823561	1.49794633255224	0.796967307542241	1.95272209142296	0.861646685743768	0.835927262847435	-2.46620450707006	0.0506126358594315	0.327814746728232
Merged-chr3-108574207-4	chr3	108574107	108574307	+	797.716675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025444, intron 2 of 3)	intron (NM_025444, intron 2 of 3)	2508.0	NM_025444	99730.0	Mm.24431	NM_025444	ENSMUSG00000048100	Taf13	1810004N01Rik|2010309N11Rik|AI847295|TAFII18	TATA-box binding protein associated factor 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-118180059-2	chr14	118179959	118180159	+	719.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42932.0	NM_021434	58245.0	Mm.275411	NM_021434	ENSMUSG00000022131	Gpr180	AB041545|E130016I23Rik|Itr	G protein-coupled receptor 180	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106818552-4	chr11	106818430	106818630	+	897.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166685, intron 18 of 18)	intron (NM_001166685, intron 18 of 18)	29278.0	NM_001166685	320162.0	Mm.30524	NM_177088	ENSMUSG00000018372	Cep95	4732496G21Rik|AI118346|AI448335|Ccdc45|D330027A14Rik|F630025I20Rik	centrosomal protein 95	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-113180384-3	chr5	113180213	113180413	+	910.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17000.0	NM_172884	243219.0	Mm.160131	NM_172884	ENSMUSG00000051339	2900026A02Rik	8430408O14Rik|A530094D01|AW539426|Gm449|Kiaa1671|mKIAA1671	RIKEN cDNA 2900026A02 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-84151764-2	chr7	84151664	84151864	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_133722, exon 1 of 3)	exon (NM_133722, exon 1 of 3)	129.0	NM_133722	70178.0	Mm.23914	NM_133722	ENSMUSG00000038459	Abhd17c	2210412D01Rik|AL023007|Fam108c|Fam108c1	abhydrolase domain containing 17C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-102995690-4	chr3	102995552	102995752	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025679)	promoter-TSS (NM_025679)	-88.0	NM_025679	66641.0	Mm.33937	NM_025679	ENSMUSG00000027854	Sike1	2810005O12Rik|5730470L24Rik|AI450236|AI839862|Sike|Sikeb	suppressor of IKBKE 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-108223328-4	chr11	108223216	108223416	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011101, intron 2 of 16)	intron (NM_011101, intron 2 of 16)	120572.0	NM_011101	18750.0	Mm.222178	NM_011101	ENSMUSG00000050965	Prkca	AI875142|Pkca	protein kinase C, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-121734924-2	chr11	121734824	121735024	+	741.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32497.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-6364653-2	chr4	6364553	6364753	+	980.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER5|LTR|ERV1	-1027.0	NM_016807	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	-0.0770146585714216	-0.202023073110537	0.444856448848245	0.202965948557985	-0.0730549182896164	-0.201030212250865	-0.205452038462449	-0.209216113745281	-2.85956315513924	0.204157809880439	1
Merged-chr14-73269341-2	chr14	73269241	73269441	+	757.416687	f1_balb.idr|f1_c57bl6.idr	intron (NM_009029, intron 11 of 26)	intron (NM_009029, intron 11 of 26)	31450.0	NM_175116	67168.0	Mm.390681	NM_175116	ENSMUSG00000033446	Lpar6	2610302I02Rik|P2ry5|P2y5	lysophosphatidic acid receptor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-77802360-2	chr18	77802260	77802460	+	604.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_013831, intron 1 of 14)	intron (NM_013831, intron 1 of 14)	-5970.0	NR_152167	619308.0	Mm.490456	NM_001033812		F830208F22Rik	-	RIKEN cDNA F830208F22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-43314133-2	chr7	43314033	43314233	+	659.400024	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357811)	promoter-TSS (NM_001357811)	-833.0	NM_001357811	69930.0	Mm.45367	NM_027264	ENSMUSG00000012640	Zfp715	2610041B18Rik|mszf15	zinc finger protein 715	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-25064704-2	chr16	25064604	25064804	+	730.375	f1_balb.idr|f1_c57bl6.idr	intron (NR_040374, intron 1 of 2)	intron (NR_040374, intron 1 of 2)	5065.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-118126769-4	chr6	118126663	118126863	+	892.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362149, intron 2 of 7)	intron (NM_001362149, intron 2 of 7)	12067.0	NM_001362149	78752.0	Mm.300317	NM_030165	ENSMUSG00000042042	Csgalnact2	4632415D10Rik|Galnact2	chondroitin sulfate N-acetylgalactosaminyltransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165402124-4	chr2	165402006	165402206	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1712.0	NM_029021	74614.0	Mm.72179	NM_029021	ENSMUSG00000027670	Ocstamp	4833422F24Rik|OC-STAMP	osteoclast stimulatory transmembrane protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-84882659-2	chr3	84882559	84882759	+	903.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177773, intron 3 of 13)	intron (NM_001177773, intron 3 of 13)	18514.0	NM_001177774	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120343824-6	chr11	120343871	120344071	+	785.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3442.0	NR_105900	102465564.0		NR_105900	ENSMUSG00000098955	Mir6935	Gm27344|mmu-mir-6935	microRNA 6935	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-86825277-6	chr12	86825330	86825530	+	901.888916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	59384.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-60669350-4	chr1	60669250	60669450	+	937.3250119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-77038.0	NM_007642	12487.0	Mm.255003	NM_007642	ENSMUSG00000026012	Cd28	-	CD28 antigen	protein-coding	2.41546922110434	2.43600102928257	2.49203286422398	2.64713226686197	3.06365037236273	2.59433754535149	2.37491847888729	3.00630226165054	0.616088202393721	0.395815387688699	0.883276804275027
Merged-chr1-92830150-2	chr1	92830050	92830250	+	795.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1495.0	NM_016696	14733.0	Mm.297976	NM_016696	ENSMUSG00000034220	Gpc1	AI462976	glypican 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-35182886-4	chr12	35182778	35182978	+	763.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12019.0	NR_030449	751520.0		NR_030449	ENSMUSG00000076253	Mir680-3	Mirn680-3	microRNA 680-3	ncRNA	3.57503367215664	3.49627261627666	2.86497543704866	4.05206979220304	3.54746603422396	2.06815939900579	3.31874188787365	2.91480519436853	-0.766212868103464	0.231346231042098	0.725747702762793
Merged-chr17-34341132-4	chr17	34341021	34341221	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001033978, exon 5 of 5)	3' UTR (NM_001033978, exon 5 of 5)	3524.0	NM_010381	100504404.0	Mm.15680	NM_010381		H2-Ea-ps	AI323765|E-alpha-f|H-2Ea|H2-Ea|I-Ealpha|Ia-3|Ia3|MHC-H2-Ea	histocompatibility 2, class II antigen E alpha, pseudogene	protein-coding	4.32849379857332	3.71730546842623	3.67636177293877	3.40129359590536	3.69664948154349	3.55335695245183	4.0588257030658	4.43634009908107	0.208700589018227	0.671881748155189	0.994295938730731
Merged-chr6-106785467-1	chr6	106785367	106785567	+	717.0	f0_balb.idr	intron (NM_021449, intron 5 of 10)	intron (NM_021449, intron 5 of 10)	14620.0	NM_021449	58799.0	Mm.290085	NM_021449	ENSMUSG00000005362	Crbn	2610203G15Rik|2900045O07Rik|AF229032|AW108261|piL	cereblon	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-16811040-4	chr12	16810956	16811156	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027677)	promoter-TSS (NR_027677)	91.0	NM_033270	50496.0	Mm.23296	NM_033270	ENSMUSG00000057469	E2f6	AI462434|E2F6a|E2F6b|EMA	E2F transcription factor 6	protein-coding	1.04382635773454	0.903633330540027	1.87756225388811	1.44471762034606	1.37527431079107	0.908279710188211	1.50503976405766	2.50170230562902	1.03415536724392	0.413128734848021	0.895145417897886
Merged-chr8-122775861-2	chr8	122775761	122775961	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144932, intron 1 of 9)	CpG	375.0	NM_144932	257633.0	Mm.334875	NM_144932	ENSMUSG00000015016	Acsf3	BB101783	acyl-CoA synthetase family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117831080-4	chr10	117830990	117831190	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024457, intron 1 of 7)	intron (NM_024457, intron 1 of 7)	14884.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-81756841-2	chr8	81756751	81756951	+	855.666626	f0_c57.idr|f1_c57bl6.idr	intron (NM_001297593, intron 4 of 23)	intron (NM_001297593, intron 4 of 23)	414289.0	NM_001297593	234515.0	Mm.324468	NM_001024617	ENSMUSG00000037940	Inpp4b	E130107I17Rik	inositol polyphosphate-4-phosphatase, type II	protein-coding	2.53125193674864	2.07570889002385	1.8654697710259	2.07312328668012	1.87147075083002	2.22276991754582	2.14905205117383	1.25788319476527	-0.618954904195111	0.525147982321121	0.948340152465298
Merged-chr11-107325781-2	chr11	107325681	107325881	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359616, intron 2 of 8)	intron (NM_001359616, intron 2 of 8)	-136400.0	NM_001161329	68979.0	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-22860261-3	chr8	22860157	22860357	+	934.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081149, intron 1 of 17)	CpG	718.0	NM_001081149	244349.0	Mm.182776	NM_001081149	ENSMUSG00000031540	Kat6a	1500036M03|9930021N24Rik|MOZ|Myst3|Zfp220	K(lysine) acetyltransferase 6A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-6106857-4	chr17	6106756	6106956	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001103181)	promoter-TSS (NM_001103181)	26.0	NM_001103181	68842.0	Mm.449307	NM_054040	ENSMUSG00000034377	Tulp4	1110057P05Rik|2210038L17Rik|Tusp	tubby like protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-27338056-2	chr14	27337956	27338156	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289687, intron 1 of 9)	intron (NM_001289687, intron 1 of 9)	2019.0	NM_001289687	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67691010-2	chr10	67690910	67691110	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur3|SINE|Alu	-119051.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-27606382-3	chr7	27606254	27606454	+	929.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001331109)	promoter-TSS (NM_001331109)	557.0	NM_007434	11652.0	Mm.177194	NM_007434	ENSMUSG00000004056	Akt2	2410016A19Rik|AW554154|PKB|PKBbeta	thymoma viral proto-oncogene 2	protein-coding	-0.154382196846626	-0.14043556708248	-0.145015623945292	0.264084004677448	0.217218392542664	-0.139401660964082	-0.144006384058012	0.470844025921762	1.35330431419936	0.568921073712474	1
Merged-chr16-4757668-4	chr16	4757564	4757764	+	919.18335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357050, intron 1 of 5)	intron (NM_001357050, intron 1 of 5)	718.0	NM_001357050	15369.0	Mm.272866	NM_010443	ENSMUSG00000004070	Hmox2	HO-2|HO2	heme oxygenase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-6733227-4	chr15	6733180	6733380	+	882.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030168, intron 2 of 37)	intron (NM_030168, intron 2 of 37)	24899.0	NM_030168	78757.0	Mm.275811	NM_030168	ENSMUSG00000050310	Rictor	4921505C17Rik|6030405M08Rik|AVO3|AW492497|D530039E11Rik	RPTOR independent companion of MTOR, complex 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-37180704-4	chr19	37180569	37180769	+	954.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045329, intron 2 of 2)	intron (NR_045329, intron 2 of 2)	-4606.0	NM_001290826	208922.0	Mm.391176	NM_198300	ENSMUSG00000039652	Cpeb3	4831444O18Rik|CPE-BP3|mKIAA0940	cytoplasmic polyadenylation element binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-126628719-4	chr3	126628633	126628833	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025438, intron 2 of 18)	intron (NM_001025438, intron 2 of 18)	31782.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-157098202-2	chr2	157098102	157098302	+	612.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_018851, exon 16 of 16)	3' UTR (NM_018851, exon 16 of 16)	11147.0	NM_001177439	383766.0	Mm.480305	NM_001177439	ENSMUSG00000074628	Tldc2	Gm1332	TBC/LysM associated domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-5244671-4	chr16	5244560	5244760	+	921.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_027446, exon 8 of 8)	3' UTR (NM_027446, exon 8 of 8)	11039.0	NM_145362	208211.0	Mm.34581	NM_145362	ENSMUSG00000039427	Alg1	HMAT1|HMT1	asparagine-linked glycosylation 1 (beta-1,4-mannosyltransferase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-148727081-1	chr3	148726981	148727181	+	559.0	f0_balb.idr	Intergenic	Intergenic	227554.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	1.49929303133707	1.31059052919897	2.10499158157064	1.71604859372977	2.1803845979478	1.06489950141615	1.04323798622832	2.22387187899469	0.222244966116359	0.852811362340654	0.998431161219273
Merged-chr9-21153800-3	chr9	21153748	21153948	+	804.366638	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3942.0	NM_016742	12539.0	Mm.32331	NM_016742	ENSMUSG00000019471	Cdc37	p50|p50Cdc37	cell division cycle 37	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80883203-6	chr7	80883096	80883296	+	887.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18073.0	NR_152101	71968.0	Mm.274226	NM_028026	ENSMUSG00000025722	Wdr73	1200011I23Rik|2410008B13Rik|AI848574|C85352	WD repeat domain 73	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-35132854-2	chr2	35132754	35132954	+	548.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290635, intron 1 of 8)	intron (NM_001290635, intron 1 of 8)	620.0	NM_001290635	26920.0	Mm.231332	NM_012018	ENSMUSG00000057110	Cntrl	6720467O09Rik|AA968343|Cep1|Cep110|IB3/5|Ma2a8|b2b1468.1Clo|b2b1468Clo	centriolin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-31109305-4	chr3	31109194	31109394	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039090, intron 2 of 6)	intron (NM_001039090, intron 2 of 6)	14236.0	NM_001271772	20482.0	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-48287033-4	chr17	48286924	48287124	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	-13014.0	NM_001033405	328833.0	Mm.329104	NM_001033405	ENSMUSG00000071068	Treml2	AW049306|Gm750|Tlt2	triggering receptor expressed on myeloid cells-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-146780147-4	chr5	146780011	146780211	+	971.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011669, intron 1 of 8)	B4A|SINE|B4	14845.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-151002357-2	chr2	151002257	151002457	+	711.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_207204, intron 1 of 23)	MTC|LTR|ERVL-MaLR	7041.0	NM_207204	78177.0	Mm.120911	NM_207204	ENSMUSG00000068115	Ninl	4930519N13Rik|Gm1004|Gm1634|mKIAA0980	ninein-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-146822316-2	chr5	146822216	146822416	+	866.8333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10574.0	NM_019647	19933.0	Mm.316592	NM_019647	ENSMUSG00000041453	Rpl21	8430440E03Rik|L21	ribosomal protein L21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-90220237-4	chr11	90220197	90220397	+	934.25415	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29179.0	NM_026178	67468.0	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	-0.131092190289425	-0.100855229362188	-0.110510843729092	0.579042298401491	-0.129135324137265	1.31724266837942	-0.108361288633872	-0.116782184120198	1.66101295749015	0.457618860446858	1
Merged-chr1-86303108-2	chr1	86303008	86303208	+	728.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145222)	promoter-TSS (NM_145222)	-113.0	NM_145222	227327.0	Mm.86467	NM_145222	ENSMUSG00000079445	B3gnt7	C330001H22Rik|beta-3GnT7	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-49500970-4	chr18	49500869	49501069	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22320.0	NR_033785	67321.0	Mm.245802	NR_033785	ENSMUSG00000100297	1700044K03Rik	-	RIKEN cDNA 1700044K03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127210157-2	chr7	127210057	127210257	+	841.2000119999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347655, intron 1 of 6)	intron (NM_001347655, intron 1 of 6)	1258.0	NM_001347655	17907.0	Mm.14526	NM_016754	ENSMUSG00000030672	Mylpf	2410014J02Rik|MLC-2|Mlc2	myosin light chain, phosphorylatable, fast skeletal muscle	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-4842772-1	chr18	4842672	4842872	+	612.0	f0_balb.idr	intron (NR_045881, intron 5 of 9)	intron (NR_045881, intron 5 of 9)	30286.0	NR_045881	100038439.0	Mm.387569	NR_045881	ENSMUSG00000097043	Gm10556	-	predicted gene 10556	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-108662100-4	chr9	108662015	108662215	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020520)	promoter-TSS (NM_020520)	17.0	NM_020520	57279.0	Mm.29666	NM_020520	ENSMUSG00000032602	Slc25a20	1110007P09Rik|C78826|Cact|mCAC	solute carrier family 25 (mitochondrial carnitine/acylcarnitine translocase), member 20	protein-coding	4.92044321893306	4.11969231923834	5.76640871278544	4.58486612715166	5.04520269564636	5.11516229330262	4.74425914911761	5.5938239295434	0.202889990298518	0.60153175893936	0.973338823574839
Merged-chr11-119249960-2	chr11	119249860	119250060	+	804.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175430, intron 11 of 18)	intron (NM_175430, intron 11 of 18)	-18003.0	NM_001159324	14387.0	Mm.4793	NM_008064	ENSMUSG00000025579	Gaa	E430018M07Rik	glucosidase, alpha, acid	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-74393385-5	chr1	74393407	74393607	+	800.714294	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029743)	promoter-TSS (NR_029743)	-803.0	NR_029743	387219.0		NR_029743	ENSMUSG00000065468	Mir26b	Mirn26b|mir-26b|mmu-mir-26b	microRNA 26b	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-135537791-4	chr7	135537743	135537943	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001316678)	promoter-TSS (NM_001316678)	19.0	NM_001316678	19267.0	Mm.945	NM_011212	ENSMUSG00000041836	Ptpre	PTPe|PTPepsilon|RPTPepsilon	protein tyrosine phosphatase, receptor type, E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-110698765-3	chr12	110698638	110698838	+	839.6333619999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2343.0	NM_010480	15519.0	Mm.1843	NM_010480	ENSMUSG00000021270	Hsp90aa1	86kDa|89kDa|AL024080|AL024147|Hsp86-1|Hsp89|Hsp90|Hspca|hsp4	heat shock protein 90, alpha (cytosolic), class A member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-59241754-4	chr3	59241665	59241865	+	960.31665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177855, intron 20 of 43)	intron (NM_177855, intron 20 of 43)	21220.0	NM_027571	70839.0	Mm.422675	NM_027571	ENSMUSG00000036353	P2ry12	2900079B22Rik|4921504D23Rik|P2Y12	purinergic receptor P2Y, G-protein coupled 12	protein-coding	2.87600471818166	3.78029742335919	2.82490569133629	2.84782715176543	2.97942878657242	2.82546699979836	2.72988138653837	1.80880418613126	-0.882069855765732	0.219880622717139	0.710830171913121
Merged-chr17-35998295-4	chr17	35998204	35998404	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015618, intron 1 of 1)	ORR1D1|LTR|ERVL-MaLR	3800.0	NR_015618	77810.0	Mm.483143	NR_015618		A930015D03Rik	-	RIKEN cDNA A930015D03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-108092105-2	chr9	108092005	108092205	+	669.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_146226, exon 8 of 22)	exon (NM_146226, exon 8 of 22)	2375.0	NM_146226	235606.0	Mm.219639	NM_146226	ENSMUSG00000032590	Apeh	-	acylpeptide hydrolase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-86300429-2	chr10	86300329	86300529	+	635.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011595)	promoter-TSS (NM_011595)	17.0	NM_011595	21859.0	Mm.4871	NM_011595	ENSMUSG00000020044	Timp3	Timp-3	tissue inhibitor of metalloproteinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-88047653-4	chr11	88047566	88047766	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_173374, exon 1 of 4)	5' UTR (NM_173374, exon 1 of 4)	293.0	NM_173374	110809.0	Mm.391719	NM_173374	ENSMUSG00000018379	Srsf1	1110054N12Rik|5730507C05Rik|6330415C05Rik|AI482334|AW491331|Asf|Sf2|Sfrs1	serine/arginine-rich splicing factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-82155590-2	chr17	82155490	82155690	+	622.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-417203.0	NM_011406	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-126921718-4	chr6	126921601	126921801	+	777.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207210, intron 1 of 14)	intron (NM_207210, intron 1 of 14)	138.0	NM_207210	101320.0	Mm.44896	NM_207210	ENSMUSG00000030345	Dyrk4	AW049118|Dyrk4a|Dyrk4b	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 4	protein-coding	0.396954390893015	0.788887523724045	0.413511184381839	0.850332278337013	0.683771135710728	0.423308019513665	0.760806972336466	1.24357222712656	1.04662640951944	0.540457144664506	1
Merged-chr8-71671737-4	chr8	71671654	71671854	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001029873)	promoter-TSS (NM_001029873)	3.0	NM_001029873	382018.0	Mm.334606	NM_001029873	ENSMUSG00000034799	Unc13a	2410078G03Rik|Munc13-1	unc-13 homolog A (C. elegans)	protein-coding	2.13388244817348	0.949592406686184	0.929313200389616	2.11655752440771	2.21607119726037	0.954089556938507	1.17382885561543	1.48779737499835	-0.315431706345989	0.813679167458715	0.998431161219273
Merged-chr16-42876216-3	chr16	42876119	42876319	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040521)	promoter-TSS (NR_040521)	-457.0	NR_040522	75722.0	Mm.243747	NR_040521	ENSMUSG00000075070	4932412D23Rik	Gm10809	RIKEN cDNA 4932412D23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-137881868-2	chr5	137881768	137881968	+	614.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10110.0	NM_001024932	545812.0	Mm.332769	NM_001024932	ENSMUSG00000066682	Pilrb2	EG545812	paired immunoglobin-like type 2 receptor beta 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-94380674-2	chr16	94380574	94380774	+	947.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_009441, intron 1 of 45)	intron (NM_009441, intron 1 of 45)	-9659.0	NM_001159617	56176.0	Mm.474449	NM_019543	ENSMUSG00000022940	Pigp	Dcrc|Dscr5	phosphatidylinositol glycan anchor biosynthesis, class P	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-6151049-2	chr18	6150950	6151150	+	599.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14952.0	NM_001039692	75415.0	Mm.239675	NM_029277	ENSMUSG00000041225	Arhgap12	2810011M08Rik	Rho GTPase activating protein 12	protein-coding	0.372587814655257	0.399718485473786	0.585197911102109	1.16031940764294	0.997463220680479	0.40169173355778	0.392864809544735	1.16947240626275	0.560491582768011	0.758869989831999	1
Merged-chr6-72154709-1	chr6	72154609	72154809	+	542.0	f1_balb.idr	TTS (NM_011375)	TTS (NM_011375)	-31512.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-46798492-4	chr11	46798367	46798567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12332.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-37881743-2	chr13	37881643	37881843	+	881.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039188, intron 1 of 9)	MTD|LTR|ERVL-MaLR	-6691.0	NR_033218	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-41390338-3	chr4	41390258	41390458	+	821.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001290454)	TTS (NM_001290454)	38395.0	NM_001355508	67123.0	Mm.289795	NM_023305	ENSMUSG00000028437	Ubap1	2700092A01Rik|NAG20|UBAP-1|Ubap	ubiquitin-associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-13758115-3	chr8	13758008	13758208	+	894.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357247, intron 1 of 16)	intron (NM_001357247, intron 1 of 16)	452.0	NM_001357247	69957.0	Mm.182412	NM_027276	ENSMUSG00000038416	Cdc16	2700071J12Rik|2810431D22Rik|APC6	CDC16 cell division cycle 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-91139605-3	chr5	91139505	91139705	+	988.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009704)	promoter-TSS (NM_009704)	6.0	NM_009704	11839.0	Mm.8039	NM_009704	ENSMUSG00000029378	Areg	AR|Mcub|Sdgf	amphiregulin	protein-coding	1.56807355265501	0.795632063611945	2.15209592401897	0.76466609129348	1.37396550519193	1.05132439191808	1.63591914755158	0.767078506580127	-0.722135807791669	0.611451888245177	0.975644971429068
Merged-chr7-126101458-2	chr7	126101358	126101558	+	932.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001311143)	TTS (NM_001311143)	-19047.0	NM_001358885	269994.0	Mm.39599	NM_001101488	ENSMUSG00000046182	Gsg1l	AI852434|C230098I05Rik|G630023A01Rik|Gm637|g1l	GSG1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-19506623-4	chr10	19506504	19506704	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152785, intron 2 of 2)	intron (NR_152785, intron 2 of 2)	11961.0	NR_152785	102635880.0	Mm.331974	NR_152784	ENSMUSG00000110902	Gm33104	-	predicted gene, 33104	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25122417-2	chr7	25122317	25122517	+	623.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163556, intron 1 of 13)	intron (NM_001163556, intron 1 of 13)	10043.0	NM_011138	18987.0	Mm.76683	NM_011138	ENSMUSG00000008496	Pou2f2	Oct-2|Oct2a|Oct2b|Oct2c|Oct2d|Otf-2|Otf2	POU domain, class 2, transcription factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-106290118-2	chr9	106290033	106290233	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027354, intron 6 of 10)	intron (NM_027354, intron 6 of 10)	9072.0	NM_027354	70235.0	Mm.23054	NM_027354	ENSMUSG00000023345	Poc1a	2510040D07Rik|Wdr51a|cha	POC1 centriolar protein A	protein-coding	-1.84379369717701	-1.81336219421491	-1.82256493189016	-1.83012433462039	-1.84165746193693	-1.66656684606785	-1.82048163379875	-1.68397012864323	1.53670164110226	0.662623097221823	1
Merged-chr18-12643669-5	chr18	12643453	12643653	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028341)	promoter-TSS (NM_028341)	20.0	NM_028341	72747.0	Mm.52526	NM_028341	ENSMUSG00000024424	Ttc39c	1700008N02Rik|2810439F02Rik	tetratricopeptide repeat domain 39C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-126910916-4	chr6	126910812	126911012	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207210, intron 2 of 14)	intron (NM_207210, intron 2 of 14)	10927.0	NM_207210	101320.0	Mm.44896	NM_207210	ENSMUSG00000030345	Dyrk4	AW049118|Dyrk4a|Dyrk4b	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 4	protein-coding	4.04251206549503	4.09866500709022	4.57976703909613	3.56441621314835	3.62494868312538	2.8765822497881	4.79975201814866	3.20388075501869	-0.364329814514692	0.512778894465963	0.945638053458749
Merged-chr3-130761601-2	chr3	130761501	130761701	+	725.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31203.0	NM_001005859	68436.0	Mm.140568	NM_026724	ENSMUSG00000062006	Rpl34	1100001I22Rik	ribosomal protein L34	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81357489-4	chr10	81357413	81357613	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028657)	promoter-TSS (NM_028657)	22.0	NM_028657	73822.0	Mm.182281	NM_028657	ENSMUSG00000034854	Mfsd12	C19orf28|F630110N24Rik|Wdt1|gr	major facilitator superfamily domain containing 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-38475693-7	chr16	38475576	38475776	+	907.642883	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359898, intron 2 of 5)	intron (NM_001359898, intron 2 of 5)	16743.0	NM_009855	12519.0	Mm.89474	NM_009855	ENSMUSG00000075122	Cd80	B71|Cd28l|Ly-53|Ly53|MIC17|TSA1	CD80 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-99006402-1	chr13	99006302	99006502	+	1000.0	f0_balb.idr	Intergenic	MLT2B2|LTR|ERVL	-21837.0	NM_027064	69382.0	Mm.45466	NM_027064	ENSMUSG00000045022	1700024P04Rik	H2bl1|Subh2bv	RIKEN cDNA 1700024P04 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-57179870-2	chr2	57179770	57179970	+	551.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_040356, intron 1 of 2)	intron (NR_040356, intron 1 of 2)	1884.0	NR_040356	767815.0	Mm.188065	NR_040356	ENSMUSG00000084938	BB557941	-	expressed sequence BB557941	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-47864906-3	chr19	47864820	47865020	+	701.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026619)	promoter-TSS (NM_026619)	-625.0	NM_030051	68214.0	Mm.63791	NM_026619	ENSMUSG00000025069	Gsto2	1700020F09Rik|4930425C18Rik|GSTO 2-2	glutathione S-transferase omega 2	protein-coding	1.83411312626178	2.19737670614287	1.5793780797069	2.03853769491401	0.769778888174745	0.836545108574295	0.815654161315322	0.797218685015332	-5.32083430560381	0.000202032239521382	0.00545123570414738
Merged-chr18-61123580-1	chr18	61123480	61123680	+	1000.0	f1_balb.idr	intron (NM_001037859, intron 11 of 21)	L1MB5|LINE|L1	6112.0	NR_105949	102466212.0		NR_105949	ENSMUSG00000098389	Mir6983	Gm27496|mmu-mir-6983	microRNA 6983	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-62952885-1	chr9	62952785	62952985	+	571.0	f0_balb.idr	intron (NM_019663, intron 1 of 13)	intron (NM_019663, intron 1 of 13)	27994.0	NM_019663	56469.0	Mm.431253	NM_019663	ENSMUSG00000032405	Pias1	2900068C24Rik|Ddxbp1|GBP	protein inhibitor of activated STAT 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-99325520-2	chr13	99325415	99325615	+	938.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026873, intron 8 of 9)	intron (NM_026873, intron 8 of 9)	19163.0	NM_026873	68927.0	Mm.276502	NM_026873	ENSMUSG00000021650	Ptcd2	1190005P08Rik	pentatricopeptide repeat domain 2	protein-coding	-1.8418762459921	-1.8125357239735	-1.82140854000656	-1.82869693527674	-1.56059678980999	-1.8106129477253	-1.81939992894326	-1.82739231600805	1.3620893379502	0.699511506488145	1
Merged-chr5-148465544-4	chr5	148465464	148465664	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65660.0	NM_007513	11987.0	Mm.275489	NM_007513	ENSMUSG00000041313	Slc7a1	4831426K01Rik|AI447493|Atrc-1|Atrc1|Cat1|Rec-1|Rev-1|mCAT-1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-53303932-2	chr15	53303832	53304032	+	665.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	42251.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-106601226-3	chr8	106601153	106601353	+	661.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-2097.0	NM_009864	12550.0	Mm.35605	NM_009864	ENSMUSG00000000303	Cdh1	AA960649|ARC-1|E-cad|Ecad|L-CAM|UVO|Um	cadherin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-102672714-2	chr15	102672614	102672814	+	999.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_030460)	promoter-TSS (NR_030460)	-848.0	NR_030460	751542.0		NR_030460	ENSMUSG00000076009	Mir688	Mirn688|mmu-mir-688	microRNA 688	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69784550-2	chr11	69784450	69784650	+	561.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_029348)	TTS (NM_029348)	11387.0	NM_009601	11443.0	Mm.86425	NM_009601	ENSMUSG00000041189	Chrnb1	Achr-2|Acrb	cholinergic receptor, nicotinic, beta polypeptide 1 (muscle)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-87102625-2	chr17	87102534	87102734	+	793.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5045.0	NM_019654	56468.0	Mm.126885	NM_019654	ENSMUSG00000037104	Socs5	1810018L08Rik|Cish5|mKIAA0671	suppressor of cytokine signaling 5	protein-coding	1.64337012416695	1.85523370162916	1.64705014320356	1.96418413344224	1.01033898613845	2.41048798779401	1.80374229140371	1.03939566455692	-0.16834087538703	0.886264955943811	0.998431161219273
Merged-chr4-88512351-2	chr4	88512251	88512451	+	544.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10443.0	NM_010510	15977.0	Mm.1245	NM_010510	ENSMUSG00000048806	Ifnb1	IFN-beta|IFNB|Ifb	interferon beta 1, fibroblast	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70797243-3	chr14	70797176	70797376	+	797.738892	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22895.0	NM_010071	13449.0	Mm.243323	NM_010071	ENSMUSG00000022102	Dok2	DokR|Frip|dok-R	docking protein 2	protein-coding	1.89177199004994	0.831620880656166	2.30639393343701	1.63277507539253	0.773095140102259	0.835992728264054	1.43196332848198	1.03033997837975	-2.56901103955255	0.0620228531656314	0.369672749437109
Merged-chr1-36947659-4	chr1	36947569	36947769	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8142.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10191504-4	chr19	10191393	10191593	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_105959)	TTS (NR_105959)	118.0	NR_105959	102465600.0		NR_105959	ENSMUSG00000098363	Mir6993	Gm27642|mmu-mir-6993	microRNA 6993	ncRNA	4.82010909035626	4.21458035120231	4.73073380754725	4.69296927649709	4.82406166236016	4.50552674440726	4.47568696753469	4.49660304608446	-0.0658990094502904	0.85561543044502	0.998431161219273
Merged-chr2-26930603-4	chr2	26930517	26930717	+	988.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011512, intron 1 of 5)	intron (NM_011512, intron 1 of 5)	2894.0	NM_011512	20932.0	Mm.300594	NM_011512	ENSMUSG00000014867	Surf4	AL033340|AL033373|Surf-4	surfeit gene 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-107923043-4	chr5	107922939	107923139	+	941.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026062, intron 2 of 4)	intron (NM_026062, intron 2 of 4)	22511.0	NM_016980	100503670.0	Mm.277897	NM_016980	ENSMUSG00000058558	Rpl5	U21RNA	ribosomal protein L5	protein-coding	2.69414289010884	3.37633334380816	3.47092648047629	2.73766081453776	2.1069940226872	2.36611531638612	2.8394483492472	2.94907951014998	-0.934110791275317	0.183749783299805	0.658587887194156
Merged-chr6-143499149-2	chr6	143499049	143499249	+	682.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36359.0	NR_155418	75904.0	Mm.414916	NR_155418	ENSMUSG00000084971	4930579D09Rik	-	RIKEN cDNA 4930579D09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-93355291-4	chr13	93355209	93355409	+	974.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_147176, intron 4 of 9)	intron (NM_147176, intron 4 of 9)	47275.0	NM_152134	26556.0	Mm.37533	NM_011982	ENSMUSG00000007617	Homer1	PSD-Zip45|SYN47|Ves-1|homer-1|vesl-1	homer scaffolding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-86274364-3	chr15	86274263	86274463	+	897.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145476, intron 4 of 12)	intron (NM_145476, intron 4 of 12)	-3312.0	NM_001358062	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-23180213-2	chr8	23180113	23180313	+	846.599976	f1_balb.idr|f1_c57bl6.idr	exon (NM_018743, exon 8 of 13)	exon (NM_018743, exon 8 of 13)	26942.0	NM_029002	74561.0	Mm.290028	NM_029002	ENSMUSG00000063672	Nkx6-3	9130417I07Rik|Nkx6.3	NK6 homeobox 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-103121163-2	chr4	103121063	103121263	+	827.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039081, intron 1 of 12)	intron (NM_001039081, intron 1 of 12)	1773.0	NM_001039081	71148.0	Mm.288721	NM_027696	ENSMUSG00000028522	Mier1	4933425I22Rik|5830411K19Rik|er1	MEIR1 treanscription regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-17284286-2	chr11	17284186	17284386	+	652.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26598.0	NM_001330649	57316.0	Mm.287982	NM_020558	ENSMUSG00000000581	C1d	1110036E10Rik|AI875855|SUN-CoR	C1D nuclear receptor co-repressor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-122835839-4	chr4	122835750	122835950	+	887.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008917)	promoter-TSS (NM_008917)	-377.0	NM_008917	19063.0	Mm.277719	NM_008917	ENSMUSG00000028657	Ppt1	9530043G02Rik|AA960502|C77813|CLN1|D4Ertd184e|INCL|PPT	palmitoyl-protein thioesterase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99835298-4	chr15	99835164	99835364	+	929.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113545, intron 2 of 10)	intron (NM_001113545, intron 2 of 10)	-15115.0	NM_023063	65970.0	Mm.33207	NM_023063	ENSMUSG00000023022	Lima1	Eplin	LIM domain and actin binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-152692086-4	chr2	152691981	152692181	+	868.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010376, intron 8 of 11)	intron (NM_010376, intron 8 of 11)	4933.0	NM_025543	66405.0	Mm.440291	NM_025543	ENSMUSG00000042814	Mcts2	2400002F11Rik|MCT-2	malignant T cell amplified sequence 2	protein-coding	2.64925480016942	3.62604951626444	3.38062864229659	1.45530077148268	2.03949503838156	2.63728286571766	3.09755457331477	2.91111340014557	-0.506061403853615	0.535811734349118	0.953242762265824
Merged-chr4-130795116-4	chr4	130795014	130795214	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011520, intron 1 of 4)	MIR|SINE|MIR	2577.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3897347-3	chr12	3897261	3897461	+	941.738098	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001271753, exon 11 of 23)	exon (NM_001271753, exon 11 of 23)	5617.0	NM_153743	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-22806504-3	chr2	22806378	22806578	+	756.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019456, intron 1 of 13)	intron (NM_019456, intron 1 of 13)	32151.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-18646525-1	chr11	18646425	18646625	+	715.0	f1_balb.idr	Intergenic	RMER1A|Other|Other	372444.0	NM_001193271	17268.0	Mm.356578	NM_010789	ENSMUSG00000020160	Meis1	C530044H18Rik|Evi8	Meis homeobox 1	protein-coding	-0.214479291901858	-0.337020868111495	-0.174041269737601	-0.343656436027428	-0.347712577392435	0.138642621728961	-0.33994725346607	0.0632430263527143	1.76758596043812	0.458903957383104	1
Merged-chr16-58479177-4	chr16	58479106	58479306	+	998.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357433, intron 6 of 10)	intron (NM_001357433, intron 6 of 10)	44220.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101974680-4	chr15	101974574	101974774	+	973.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20387.0	NM_212487	332131.0	Mm.325105	NM_212487	ENSMUSG00000050463	Krt78	2310030B04Rik|Kb40	keratin 78	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-6697358-4	chr17	6697255	6697455	+	960.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183370, intron 1 of 12)	intron (NM_183370, intron 1 of 12)	8283.0	NM_183370	83672.0	Mm.442201	NM_031395	ENSMUSG00000041831	Sytl3	A430092N21|Slp3|Slp3-a|Slp3-b|mFLJ00307	synaptotagmin-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-43530348-4	chr19	43530253	43530453	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-5748.0	NM_010324	14718.0	Mm.19039	NM_010324	ENSMUSG00000025190	Got1	AI789014|Got-1|cAspAT|cCAT	glutamic-oxaloacetic transaminase 1, soluble	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-48965128-3	chr13	48965023	48965223	+	842.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033268, intron 1 of 17)	Tigger15a|DNA|TcMar-Tigger	2705.0	NM_001033268	218236.0	Mm.426571	NM_001033268	ENSMUSG00000038014	Fam120a	C9orf10|Ossa	family with sequence similarity 120, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-27023795-4	chr9	27023680	27023880	+	980.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178027, intron 1 of 5)	intron (NM_178027, intron 1 of 5)	6314.0	NM_178027	69091.0	Mm.218717	NM_178027	ENSMUSG00000031988	Vps26b	1810012I05Rik|2310075A12Rik|AI848392	VPS26 retromer complex component B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101590328-2	chr11	101590228	101590428	+	641.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359325, intron 7 of 7)	intron (NM_001359325, intron 7 of 7)	8029.0	NM_001359325	217203.0	Mm.280559	NM_144830	ENSMUSG00000034947	Tmem106a	0610008L10Rik|AI043106|BC022145	transmembrane protein 106A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-118097266-2	chr10	118097167	118097367	+	791.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-44520.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	3.31217572403301	2.39900695372981	2.86255341914092	2.97800826444181	3.21899670545975	2.41648775547423	3.33385176619465	2.79700248271142	0.1068242687332	0.874561290838009	0.998431161219273
Merged-chr12-8946098-2	chr12	8945998	8946198	+	621.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1831.0	NM_010770	17182.0	Mm.42226	NM_010770	ENSMUSG00000020583	Matn3	AV009181	matrilin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-34549401-4	chr5	34549277	34549477	+	578.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145859)	promoter-TSS (NM_001145859)	-199.0	NM_001145859	24055.0	Mm.5012	NM_011893	ENSMUSG00000054520	Sh3bp2	3BP2	SH3-domain binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-86757136-2	chr8	86757036	86757236	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11130.0	NM_009172	20437.0	Mm.324553	NM_009172	ENSMUSG00000036840	Siah1a	AA982064|AI853500|Sinh1a	siah E3 ubiquitin protein ligase 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-45078785-1	chr19	45078685	45078885	+	545.0	f1_balb.idr	intron (NM_001362397, intron 4 of 4)	intron (NM_001362397, intron 4 of 4)	2698.0	NM_001362397	107250.0	Mm.24417	NM_178929	ENSMUSG00000025213	Kazald1	AI842353|Bono1|IGFBP-rP10	Kazal-type serine peptidase inhibitor domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-105702077-4	chr5	105701978	105702178	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178701, intron 1 of 2)	intron (NM_178701, intron 1 of 2)	1268.0	NM_178701	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-78980880-4	chr12	78980773	78980973	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178745, intron 1 of 2)	intron (NM_178745, intron 1 of 2)	2605.0	NM_001170401	268567.0	Mm.341747	NM_178745	ENSMUSG00000046157	Tmem229b	6330442E10Rik|9830138K24|AU019070	transmembrane protein 229B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-69085139-3	chr18	69085047	69085247	+	989.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62874.0	NR_105780	102465187.0		NR_105780	ENSMUSG00000098366	Mir145b	Gm27644|mmu-mir-145b	microRNA 145b	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-37361211-4	chr3	37361099	37361299	+	883.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008006, intron 1 of 2)	intron (NM_008006, intron 1 of 2)	12546.0	NM_008006	14173.0	Mm.473689	NM_008006	ENSMUSG00000037225	Fgf2	Fgf-2|Fgfb|bFGF	fibroblast growth factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-112366905-4	chr13	112366806	112367006	+	808.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168403, intron 9 of 11)	intron (NM_001168403, intron 9 of 11)	78388.0	NM_001168404	77318.0	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-47262188-4	chr4	47262077	47262277	+	960.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009928, intron 9 of 39)	intron (NM_009928, intron 9 of 39)	54165.0	NM_009928	12819.0	Mm.233547	NM_009928	ENSMUSG00000028339	Col15a1	-	collagen, type XV, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-88385884-1	chr10	88385784	88385984	+	678.0	f0_balb.idr	intron (NM_001004164, intron 1 of 20)	intron (NM_001004164, intron 1 of 20)	6472.0	NM_001004164	432486.0	Mm.335190	NM_001004164	ENSMUSG00000035311	Gnptab	EG432486|mKIAA1208	N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-74957862-4	chr5	74957764	74957964	+	847.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045866, intron 2 of 4)	intron (NR_045866, intron 2 of 4)	8670.0	NR_045866	619945.0	Mm.359372	NM_001037908	ENSMUSG00000072874	Gm6116	EG619945	predicted gene 6116	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-154617175-2	chr2	154617075	154617275	+	639.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_199304, intron 1 of 14)	Lx5b|LINE|L1	3807.0	NM_199304	228807.0	Mm.103555	NM_199304	ENSMUSG00000059842	Zfp341	Znf341	zinc finger protein 341	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-79288284-4	chr3	79288177	79288377	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57099.0	NM_001142953	100233207.0	Mm.373801	NM_001142953	ENSMUSG00000091685	Gm17359	-	predicted gene, 17359	protein-coding	5.01435095244609	4.13954302533172	4.0023308968509	3.8182188612351	5.02431294978033	4.42861040594482	3.80179340131994	3.83816642128353	0.0496654320870133	0.917016343952573	0.998431161219273
Merged-chr15-98761320-4	chr15	98761224	98761424	+	983.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007478, intron 1 of 4)	intron (NM_007478, intron 1 of 4)	1668.0	NM_001355510	11842.0	Mm.221298	NM_007478	ENSMUSG00000051853	Arf3	5430400P17Rik|AI854770	ADP-ribosylation factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-87426447-4	chr11	87426375	87426575	+	963.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031386, intron 1 of 30)	intron (NM_031386, intron 1 of 30)	-1116.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-123028531-2	chr8	123028431	123028631	+	617.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 1 of 12)	intron (NM_001081379, intron 1 of 12)	13753.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-100440888-4	chr3	100440787	100440987	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14482.0	NR_040543	73806.0	Mm.396549	NR_040543	ENSMUSG00000086923	4930406D18Rik	-	RIKEN cDNA 4930406D18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-147849216-2	chr4	147849116	147849316	+	664.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355730)	promoter-TSS (NM_001355730)	-798.0	NM_198619	242747.0	Mm.332053	NM_198619	ENSMUSG00000059423	Zfp933	2810408P10Rik	zinc finger protein 933	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-57211287-4	chr16	57211204	57211404	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026254, intron 4 of 17)	(TC)n|Simple_repeat|Simple_repeat	-9833.0	NM_001358434	67581.0	Mm.257819	NM_026254	ENSMUSG00000022749	Tbc1d23	4930451A13Rik|AU015720|AU043671|AU043778|D030022P07Rik|W51689	TBC1 domain family, member 23	protein-coding	5.08125815723465	4.75270102615638	4.86645488067826	5.02497234814662	4.86698564810385	3.92732126561156	4.37250858413025	4.29954854976369	-0.641263263919395	0.0790713577432208	0.427632315906906
Merged-chr13-42075734-2	chr13	42075634	42075834	+	721.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_007772, intron 2 of 8)	intron (NM_007772, intron 2 of 8)	23713.0	NM_007772	110521.0	Mm.4808	NM_007772	ENSMUSG00000021366	Hivep1	Cryabp1	human immunodeficiency virus type I enhancer binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-26766890-2	chr6	26766790	26766990	+	899.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	835464.0	NR_040771	626904.0	Mm.126787	NR_040771	ENSMUSG00000106799	Gm20756	-	predicted gene, 20756	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44568259-3	chr9	44568141	44568341	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36651.0	NM_001110826	13209.0	Mm.267061	NM_007841	ENSMUSG00000032097	Ddx6	1110001P04Rik|C430015D01Rik|E230023J21Rik|HLR2|mRCK/P54|p54|rck	DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	protein-coding	0.884062137532148	0.789455020511225	0.441592476025582	0.951039013854076	0.894186364057119	0.449930907991867	0.616606461571787	0.597337736037148	-0.780088891627782	0.633079996226268	1
Merged-chr7-102426496-4	chr7	102426427	102426627	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009287, intron 8 of 11)	intron (NM_009287, intron 8 of 11)	-15168.0	NM_009103	20133.0	Mm.197486	NM_009103	ENSMUSG00000030978	Rrm1	RnrM1	ribonucleotide reductase M1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-20945266-4	chr17	20945156	20945356	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016891)	promoter-TSS (NM_016891)	-198.0	NM_016891	51792.0	Mm.294138	NM_016891	ENSMUSG00000007564	Ppp2r1a	6330556D22Rik|PP2A|PR65	protein phosphatase 2, regulatory subunit A, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-64075894-4	chr15	64075721	64075921	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15373.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-68060445-2	chr15	68060348	68060548	+	685.5	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	198408.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-36704139-3	chr16	36704091	36704291	+	788.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285788, intron 1 of 7)	intron (NM_001285788, intron 1 of 7)	10213.0	NM_001285791	106347.0	Mm.17807	NM_134109	ENSMUSG00000022900	Ildr1	AU041483|AU044638	immunoglobulin-like domain containing receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-84009870-2	chr12	84009770	84009970	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_012006, exon 1 of 3)	exon (NM_012006, exon 1 of 3)	368.0	NM_012006	26897.0	Mm.1978	NM_012006	ENSMUSG00000072949	Acot1	ACH2|CTE-1|CTE-I|Cte1|D12Ucla1	acyl-CoA thioesterase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19663955-2	chr7	19663855	19664055	+	773.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_019649, intron 1 of 13)	intron (NM_019649, intron 1 of 13)	1075.0	NM_019649	56457.0	Mm.290960	NM_019649	ENSMUSG00000002981	Clptm1	HS9|N14	cleft lip and palate associated transmembrane protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-118180414-4	chr14	118180304	118180504	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43277.0	NM_021434	58245.0	Mm.275411	NM_021434	ENSMUSG00000022131	Gpr180	AB041545|E130016I23Rik|Itr	G protein-coupled receptor 180	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-44555455-4	chr19	44555362	44555562	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347447)	promoter-TSS (NM_001347447)	-20.0	NM_026061	67264.0	Mm.2060	NM_026061	ENSMUSG00000025204	Ndufb8	2900010I05Rik|AI987932|CI-ASHI	NADH dehydrogenase (ubiquinone) 1 beta subcomplex 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-24564810-4	chr7	24564721	24564921	+	846.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360168, intron 4 of 17)	intron (NM_001360168, intron 4 of 17)	13334.0	NM_001360169	22594.0	Mm.4347	NM_009532	ENSMUSG00000051768	Xrcc1	Xrcc-1	X-ray repair complementing defective repair in Chinese hamster cells 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127510735-2	chr10	127510635	127510835	+	761.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4204.0	NM_001098789	407790.0	Mm.336856	NM_001098789	ENSMUSG00000040280	Ndufa4l2	BC064011	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4-like 2	protein-coding	-0.0285709223981463	-0.137054174764292	0.246296175586108	-0.142952014190367	0.259627002857959	-0.136294322174992	0.143264373852801	-0.142507890183529	0.478579420664458	0.831822267078383	1
Merged-chr2-125775143-4	chr2	125775043	125775243	+	876.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177608, intron 2 of 17)	intron (NM_177608, intron 2 of 17)	7727.0	NM_177608	70354.0	Mm.138091	NM_133725	ENSMUSG00000035093	Secisbp2l	3110001I20Rik|AI504340|C630011I23	SECIS binding protein 2-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-21132129-4	chr5	21132046	21132246	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44133.0	NR_153366	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-44930221-4	chr19	44930132	44930332	+	993.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081225)	promoter-TSS (NM_001081225)	-887.0	NM_172638	226151.0	Mm.212609	NM_172638	ENSMUSG00000036097	Slf2	3632432H19|Fam178a	SMC5-SMC6 complex localization factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-120611136-2	chr5	120611036	120611236	+	543.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133908, intron 3 of 3)	intron (NM_133908, intron 3 of 3)	1453.0	NM_029096	100764.0	Mm.9654	NM_029096	ENSMUSG00000029600	Rita1	1110008J03Rik|AI853657|C86297|Rita	RBPJ interacting and tubulin associated 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4270645-2	chr16	4270545	4270745	+	728.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	41416.0	NR_003628	436332.0	Mm.478141	NM_001013830	ENSMUSG00000089645	Gm5766	EG436332	ribosomal protein L7a pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-31468010-4	chr5	31467903	31468103	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360001, intron 5 of 12)	ORR1E|LTR|ERVL-MaLR	15567.0	NM_001360000	269639.0	Mm.259127	NM_172993	ENSMUSG00000062761	Zfp512	2500002M11Rik|AI450173|D230008H22|Znf512	zinc finger protein 512	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-160214768-4	chr2	160214670	160214870	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2c|LINE|L2	112724.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-105016974-4	chr2	105016767	105016967	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145380, intron 1 of 10)	CpG	160.0	NM_145380	98221.0	Mm.379278	NM_145380	ENSMUSG00000027170	Eif3m	Ga17|Pcid1|Tango7	eukaryotic translation initiation factor 3, subunit M	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-40954257-2	chr15	40954157	40954357	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356998, intron 3 of 6)	intron (NM_001356998, intron 3 of 6)	-219444.0	NR_151516	100418302.0		NR_151516		4930555K19Rik	-	leucine rich repeat and sterile alpha motif containing 1 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-8924512-4	chr12	8924419	8924619	+	964.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008640, intron 1 of 6)	intron (NM_008640, intron 1 of 6)	3212.0	NM_008640	17775.0	Mm.30071	NM_008640	ENSMUSG00000020585	Laptm4a	AA286466|LAPTM4|MTP|Mtrp|mKIAA0108	lysosomal-associated protein transmembrane 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-145222190-4	chr4	145222086	145222286	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011610, intron 8 of 9)	intron (NM_011610, intron 8 of 9)	24684.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-85598315-1	chr1	85598215	85598415	+	643.666687	f1_balb.idr	intron (NM_030194, intron 1 of 11)	intron (NM_030194, intron 1 of 11)	495.0	NM_030194	109032.0	Mm.335802	NM_030194	ENSMUSG00000070034	Sp110	5031415C07Rik|52kDa|5830484A20Rik|Ifi75|Ipr1	Sp110 nuclear body protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-50245180-3	chr6	50245100	50245300	+	799.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018769, intron 3 of 9)	intron (NM_018769, intron 3 of 9)	16569.0	NM_018769	54722.0	Mm.248361	NM_018769	ENSMUSG00000029821	Gsdme	2310037D07Rik|4932441K13Rik|Dfna5|Dfna5h|EG14210|Fin15	gasdermin E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-149980108-4	chr4	149980008	149980208	+	866.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_173371, exon 5 of 5)	3' UTR (NM_173371, exon 5 of 5)	23128.0	NM_001291004	100198.0	Mm.22183	NM_173371	ENSMUSG00000028980	H6pd	AI785303|G6pd1|Gpd-1|Gpd1	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126695640-4	chr8	126695553	126695753	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-102217.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139324979-4	chr5	139324883	139325083	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172723, intron 1 of 10)	intron (NM_172723, intron 1 of 10)	481.0	NM_172723	231821.0	Mm.297819	NM_172723	ENSMUSG00000056413	Adap1	4930431P11Rik|Centa1|GC1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-125066609-2	chr8	125066510	125066710	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_174854, intron 1 of 12)	intron (NM_174854, intron 1 of 12)	12415.0	NM_174854	244667.0	Mm.233504	NM_170596	ENSMUSG00000043051	Disc1	-	disrupted in schizophrenia 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-57965632-2	chr18	57965532	57965732	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	86954.0	NM_009194	20496.0	Mm.399997	NM_009194	ENSMUSG00000024597	Slc12a2	9330166H04Rik|Nkcc1|mBSC2|sy-ns	solute carrier family 12, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-63572808-2	chr4	63572708	63572908	+	741.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_144905, intron 6 of 9)	intron (NM_144905, intron 6 of 9)	12581.0	NM_144905	230279.0	Mm.41523	NM_144905	ENSMUSG00000045917	Tmem268	6330416G13Rik|AW492431|bM230C2.2	transmembrane protein 268	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-37155354-2	chr10	37155254	37155454	+	568.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16428.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-117917052-4	chr6	117916970	117917170	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166427)	promoter-TSS (NM_001166427)	-224.0	NM_001166427	98758.0	Mm.422979	NM_133834	ENSMUSG00000042079	Hnrnpf	4833420I20Rik|AA407306|Hnrpf	heterogeneous nuclear ribonucleoprotein F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-73481940-2	chr15	73481840	73482040	+	909.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30620.0	NR_152151	105841.0	Mm.322557	NM_001081066	ENSMUSG00000036661	Dennd3	AI447457|E030003N15Rik	DENN/MADD domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-86973153-2	chr10	86973053	86973253	+	727.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_138673, intron 5 of 68)	intron (NM_138673, intron 5 of 68)	34789.0	NM_138673	192188.0	Mm.279611	NM_138673	ENSMUSG00000035459	Stab2	FEEL-2|FELL|MFEEL-2|STAB-2	stabilin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-140835724-2	chr2	140835624	140835824	+	562.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013802, intron 4 of 18)	intron (NM_001013802, intron 4 of 18)	-164248.0	NM_178382	71436.0	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-73686457-2	chr12	73686357	73686557	+	562.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008856, intron 2 of 13)	intron (NM_008856, intron 2 of 13)	101661.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101650780-2	chr7	101650628	101650828	+	566.625	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-13040.0	NM_009191	20480.0	Mm.3990	NM_009191	ENSMUSG00000001829	Clpb	AL118244|Skd3	ClpB caseinolytic peptidase B	protein-coding	1.01940322587563	1.11958767191332	1.57321760790438	2.48276849321	2.63611162586101	1.12639851040612	2.19221407619094	2.64640037910208	1.35001567753956	0.25172388212008	0.749698831323701
Merged-chr17-34959368-4	chr17	34959240	34959440	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010478)	promoter-TSS (NM_010478)	-102.0	NM_010478	15511.0	Mm.372314	NM_010478	ENSMUSG00000090877	Hspa1b	Hsp70|Hsp70-1|Hsp70.1|hsp68	heat shock protein 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150113074-3	chr4	150112974	150113174	+	876.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6270.0	NM_019741	56485.0	Mm.260220	NM_019741	ENSMUSG00000028976	Slc2a5	AI526984|Glut5|Slc5a	solute carrier family 2 (facilitated glucose transporter), member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-136611048-1	chr6	136610948	136611148	+	567.0	f1_balb.idr	Intergenic	Intergenic	50845.0	NM_025806	66857.0	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	-2.18361151404719	-2.02201993626881	-2.16403530460334	-2.1710062446989	-2.18164157430194	-2.15370992785044	-2.16211418110791	-2.16975844975469	-0.683654500252594	0.846597994014493	1
Merged-chr4-155489433-4	chr4	155489351	155489551	+	852.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1910.0	NM_001160017	14688.0	Mm.2344	NM_008142	ENSMUSG00000029064	Gnb1	AA409223|C77571|Gnb-1	guanine nucleotide binding protein (G protein), beta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-140245555-6	chr1	140245373	140245573	+	780.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081027)	promoter-TSS (NM_001081027)	-784.0	NM_001081027	240776.0	Mm.483845	NM_001081027	ENSMUSG00000052726	Kcnt2	E330038N15Rik|Slick	potassium channel, subfamily T, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-8928840-2	chr19	8928740	8928940	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144872)	promoter-TSS (NM_144872)	516.0	NM_009073	19881.0	Mm.426094	NM_009073	ENSMUSG00000071648	Rom1	M101156|Rgsc1156|Rom-1|Rosp1|Tspan23	rod outer segment membrane protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-30667646-2	chr5	30667546	30667746	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007681, intron 1 of 4)	ID4|SINE|ID	760.0	NR_126074	12615.0	Mm.290563	NM_007681	ENSMUSG00000029177	Cenpa	Cenp-A	centromere protein A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-116268882-4	chr8	116268795	116268995	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-236120.0	NM_029297	75465.0	Mm.23114	NM_029297	ENSMUSG00000034467	Dynlrb2	1700009A04Rik|DNLC2B|Dncl2b	dynein light chain roadblock-type 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-116513464-4	chr10	116513401	116513601	+	862.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037848, intron 4 of 4)	intron (NM_001037848, intron 4 of 4)	14448.0	NM_001359253	72068.0	Mm.351553	NM_028082	ENSMUSG00000020166	Cnot2	2600016M12Rik|2810470K03Rik|AA537049|AA959607|AW557563|C79650	CCR4-NOT transcription complex, subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-25067507-4	chr8	25067417	25067617	+	890.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031257, intron 3 of 11)	intron (NM_031257, intron 3 of 11)	-28555.0	NM_001081187	330723.0	Mm.334452	NM_001081187	ENSMUSG00000037406	Htra4	B430206E18Rik	HtrA serine peptidase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-59343215-2	chr19	59343115	59343315	+	574.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033222, intron 1 of 4)	intron (NM_001033222, intron 1 of 4)	2565.0	NM_001033222	107368.0	Mm.27250	NM_001033222	ENSMUSG00000074746	Pdzd8	A630041P07Rik|AV329468|AW228944|Pdzk8	PDZ domain containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-41449939-2	chr10	41449839	41450039	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153398)	promoter-TSS (NM_153398)	-419.0	NM_001277229	268294.0	Mm.258475	NM_153398	ENSMUSG00000019826	Zbtb24	BC055367|Bif1|Bsg1|ZNF450	zinc finger and BTB domain containing 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-145149240-4	chr6	145149140	145149340	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361633, intron 4 of 16)	intron (NM_001361633, intron 4 of 16)	3765.0	NM_001361633	16970.0	Mm.843	NM_008511	ENSMUSG00000030263	Lrmp	D6Int3|D6Int4|D6Int5|D6Int7|D6Int8|Jaw1	lymphoid-restricted membrane protein	protein-coding	4.51887309539232	3.6616978018862	4.99952862866224	4.44183270205231	4.35187487267466	4.13640414188252	4.63968399183695	4.71935648305484	-0.0102224732506599	0.980238074994378	0.998431161219273
Merged-chr7-23512373-2	chr7	23512273	23512473	+	575.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6784.0	NM_001101562	622032.0	Mm.474428	NM_001101562	ENSMUSG00000090715	Vmn1r167	EG622032|Gm6279	vomeronasal 1 receptor 167	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-90584162-1	chr17	90584062	90584262	+	542.0	f1_c57bl6.idr	intron (NM_001346957, intron 12 of 18)	intron (NM_001346957, intron 12 of 18)	-128282.0	NM_001346959	18189.0	Mm.478418	NM_020252	ENSMUSG00000024109	Nrxn1	1700062G21Rik|9330127H16Rik|A230068P09Rik|mKIAA0578	neurexin I	protein-coding	-1.18378942727406	-1.15669478905697	-0.457913181653105	-1.17806440097404	-1.18323730008524	-1.15415234459186	-1.16577117532349	-1.17633933179771	-2.81844548480871	0.412768592413622	1
Merged-chr9-114979734-1	chr9	114979634	114979834	+	642.0	f1_c57bl6.idr	Intergenic	Intergenic	-45747.0	NM_175380	333433.0	Mm.38198	NM_175380	ENSMUSG00000050627	Gpd1l	2210409H23Rik|D9Ertd660e	glycerol-3-phosphate dehydrogenase 1-like	protein-coding	1.62114424938863	0.329451345287764	0.315057537354034	1.75270646995573	0.286994651283561	0.332636082953596	0.570859349156031	0.30565414731535	-4.09973433743737	0.0262460483044864	0.216674372172405
Merged-chr18-62062848-2	chr18	62062748	62062948	+	667.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	109773.0	NM_172628	225608.0	Mm.262320	NM_172628	ENSMUSG00000045629	Sh3tc2	D430044G18Rik	SH3 domain and tetratricopeptide repeats 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-49368847-1	chr6	49368747	49368947	+	566.0	f1_c57bl6.idr	intron (NM_172727, intron 1 of 6)	MTD|LTR|ERVL-MaLR	1108.0	NM_172727	231946.0	Mm.35199	NM_172727	ENSMUSG00000047115	Fam221a	D330028D13Rik	family with sequence similarity 221, member A	protein-coding	0.305439856680828	0.34261919088397	1.4509114227241	0.32136478086507	0.799130606157754	0.345264523222302	1.46856399932584	0.323012245325942	0.409113896368116	0.828165730995641	0.998431161219273
Merged-chr2-23069222-6	chr2	23069119	23069319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001102438, exon 1 of 13)	5' UTR (NM_001102438, exon 1 of 13)	147.0	NM_001355638	74159.0	Mm.181973	NM_028793	ENSMUSG00000026781	Acbd5	1300014E15Rik	acyl-Coenzyme A binding domain containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-5734570-4	chr11	5734458	5734658	+	964.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361588, intron 1 of 6)	intron (NM_001361588, intron 1 of 6)	6618.0	NM_001361590	72046.0	Mm.271657	NM_178623	ENSMUSG00000049680	Urgcp	2010005J08Rik|9130001I21Rik|AW060359|Urg4|mKIAA1507	upregulator of cell proliferation	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-67253094-2	chr18	67252994	67253194	+	929.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M8|LINE|L1	-7264.0	NM_001357518	225651.0	Mm.235792	NM_172630	ENSMUSG00000062526	Mppe1	Pgap5	metallophosphoesterase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167642848-2	chr2	167642748	167642948	+	660.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_145538)	TTS (NM_145538)	-10843.0	NM_023230	66589.0	Mm.278783	NM_023230	ENSMUSG00000078923	Ube2v1	0610011J09Rik|AI256840|CROC-1|CROC1|D7Bwg1382e|UEV-1	ubiquitin-conjugating enzyme E2 variant 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3418072-2	chr12	3417972	3418172	+	592.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_030694, intron 1 of 2)	intron (NR_030694, intron 1 of 2)	8675.0	NR_030694	100043040.0	Mm.415417	NR_030694	ENSMUSG00000071456	1110002L01Rik	-	RIKEN cDNA 1110002L01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35911619-3	chr17	35911534	35911734	+	648.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361453, intron 4 of 5)	intron (NM_001361453, intron 4 of 5)	-1559.0	NM_001357865	73242.0	Mm.273155	NM_028476	ENSMUSG00000024426	Atat1	0610011P08Rik|2610008K08Rik|2610110G12Rik|3110080J08Rik|Mec17|TAT	alpha tubulin acetyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-144203107-4	chr1	144203011	144203211	+	956.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25739.0	NM_153171	246709.0	Mm.38271	NM_153171	ENSMUSG00000051079	Rgs13	-	regulator of G-protein signaling 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-10897530-4	chr16	10897395	10897595	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17302.0	NR_131135	545180.0	Mm.373756	NR_131135	ENSMUSG00000095369	Gm21859	-	predicted gene, 21859	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-35683990-4	chr7	35683899	35684099	+	993.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36517.0	NM_019746	56330.0	Mm.371609	NM_019746	ENSMUSG00000030417	Pdcd5	2200003D22Rik|AA408513|Tfar19	programmed cell death 5	protein-coding	0.994441090685938	1.41058190105024	2.33674096950756	1.0460525060371	2.33906051065363	1.8695161644142	3.33395690024176	1.8961129017268	2.17555489825153	0.0455512083102477	0.307496285056087
Merged-chr13-43866036-2	chr13	43865936	43866136	+	975.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	80924.0	NM_001289915	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-50587261-3	chr9	50587148	50587348	+	844.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16601.0	NM_025848	66925.0	Mm.10406	NM_025848	ENSMUSG00000000171	Sdhd	3110001M13Rik|AVLL5809|C78570|PRO19626	succinate dehydrogenase complex, subunit D, integral membrane protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-51435871-4	chr10	51435751	51435951	+	941.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44761.0	NM_008147	14727.0	Mm.439661	NM_008147	ENSMUSG00000112023	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-39781526-4	chr6	39781418	39781618	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29418.0	NM_010270	14548.0	Mm.377071	NM_010270	ENSMUSG00000029918	Mrps33	AI841153|CGI-139|Gdap3|MRP-S33|PTD003	mitochondrial ribosomal protein S33	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-21637537-4	chr16	21637390	21637590	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081366, intron 45 of 46)	RMER1B|Other|Other	57175.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52079919-3	chr13	52079833	52080033	+	900.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16808.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46620613-2	chr8	46620513	46620713	+	788.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001284409, intron 1 of 6)	intron (NM_001284409, intron 1 of 6)	3322.0	NM_009810	12367.0	Mm.34405	NM_009810	ENSMUSG00000031628	Casp3	A830040C14Rik|AC-3|CASP-3|CC3|CPP-32|CPP32|Caspase-3|Lice|SCA-1|Yama|mldy	caspase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-104234354-2	chr8	104234254	104234454	+	743.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045642, intron 5 of 8)	intron (NR_045642, intron 5 of 8)	14204.0	NR_045642	57813.0	Mm.183110	NM_021028	ENSMUSG00000035824	Tk2	AU024611|mt-TK	thymidine kinase 2, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-5447059-4	chr15	5446949	5447149	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49269.0	NR_045274	71432.0	Mm.291087	NR_045274	ENSMUSG00000110018	5430437J10Rik	-	RIKEN cDNA 5430437J10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-129586187-4	chr5	129586075	129586275	+	953.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011846, intron 1 of 9)	intron (NM_011846, intron 1 of 9)	2006.0	NM_011846	23948.0	Mm.42047	NM_011846	ENSMUSG00000029436	Mmp17	MT4-MMP|MT4MMP|MTMMP4	matrix metallopeptidase 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64092954-4	chr5	64092834	64093034	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356964)	promoter-TSS (NM_001356964)	-5.0	NM_025700	66681.0	Mm.2325	NM_025700	ENSMUSG00000029171	Pgm1	3230402E02Rik|Pgm-1|Pgm2	phosphoglucomutase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19627342-2	chr7	19627242	19627442	+	596.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009046, intron 2 of 10)	RMER17C|LTR|ERVK	2096.0	NM_001290457	19698.0	Mm.1741	NM_009046	ENSMUSG00000002983	Relb	shep	avian reticuloendotheliosis viral (v-rel) oncogene related B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-77084287-4	chr16	77084193	77084393	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013918, intron 17 of 23)	intron (NM_013918, intron 17 of 23)	70224.0	NM_013918	30940.0	Mm.40986	NM_013918	ENSMUSG00000022867	Usp25	-	ubiquitin specific peptidase 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-123854752-2	chr9	123854652	123854852	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011798, exon 2 of 2)	3' UTR (NM_011798, exon 2 of 2)	-2853.0	NM_001110253	17281.0	Mm.252941	NM_148925	ENSMUSG00000025241	Fyco1	2810409M01Rik|Mem2|RUFY3|ZFYVE7	FYVE and coiled-coil domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-49856422-2	chr16	49856322	49856522	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010581, intron 1 of 9)	intron (NM_010581, intron 1 of 9)	768.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128566180-4	chr10	128566085	128566285	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011119)	promoter-TSS (NM_011119)	-251.0	NM_011119	18813.0	Mm.4742	NM_011119	ENSMUSG00000025364	Pa2g4	38kDa|AA672939|Ebp1|Plfap	proliferation-associated 2G4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-51492833-3	chr10	51492742	51492942	+	729.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291894, intron 4 of 8)	intron (NM_001291894, intron 4 of 8)	1944.0	NM_013532	14728.0	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-13868945-4	chr10	13868857	13869057	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347362)	promoter-TSS (NM_001347362)	0.0	NM_025446	66253.0	Mm.45755	NM_025446	ENSMUSG00000019806	Aig1	1500031O19Rik|AV064870|AW413422|CGI-103	androgen-induced 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-61083248-4	chr18	61083156	61083356	+	984.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001146268, exon 23 of 23)	exon (NM_001146268, exon 23 of 23)	-22316.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-75847580-2	chr15	75847480	75847680	+	724.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	-5672.0	NM_172121	223642.0	Mm.209800	NM_172121	ENSMUSG00000075600	Zc3h3	BC049953|Kiaa0150|Smicl|Zc3hdc3	zinc finger CCCH type containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47733088-2	chr17	47732988	47733188	+	661.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_025973, exon 7 of 9)	exon (NM_025973, exon 7 of 9)	-3949.0	NM_001161722	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-55532962-4	chr4	55532851	55533051	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010637)	promoter-TSS (NM_010637)	-476.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6272276-2	chr19	6272176	6272376	+	845.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4620.0	NM_010119	13660.0	Mm.30169	NM_010119	ENSMUSG00000024772	Ehd1	AA409636|Past1|RME-1	EH-domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-99382950-4	chr5	99382853	99383053	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 2 of 3)	intron (NR_030692, intron 2 of 3)	-130026.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5187670-4	chr17	5187564	5187764	+	880.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 4 of 19)	intron (NM_001085355, intron 4 of 19)	192590.0	NM_001085355	239985.0	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-88576844-2	chr17	88576712	88576912	+	915.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028658, intron 16 of 21)	B4|SINE|B4	46688.0	NM_028658	73825.0	Mm.271817	NM_028658	ENSMUSG00000034709	Ppp1r21	1110018J12Rik|AI426045|AW550781|Ccdc128|Klraq1	protein phosphatase 1, regulatory subunit 21	protein-coding	-1.04446994549586	-1.02430150555533	-0.85571191593018	-1.04088093696898	-1.04393624043168	-1.02172839526125	-0.444248496842517	-1.04050309324358	1.85096186283575	0.558013953607104	1
Merged-chr16-17204611-2	chr16	17204511	17204711	+	685.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3119.0	NM_009456	22195.0	Mm.3074	NM_009456	ENSMUSG00000038965	Ube2l3	C79827|UbcM4|Ubce7	ubiquitin-conjugating enzyme E2L 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-20232253-4	chr11	20232098	20232298	+	989.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172260, intron 5 of 6)	intron (NM_172260, intron 5 of 6)	17226.0	NM_172260	216543.0	Mm.260314	NM_172260	ENSMUSG00000044066	Cep68	6030463E10Rik|AI481761|BC027174|Kiaa0582	centrosomal protein 68	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-46818159-2	chr12	46818059	46818259	+	917.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021361, intron 1 of 4)	intron (NM_021361, intron 1 of 4)	616.0	NM_021361	664883.0	Mm.247195	NM_021361	ENSMUSG00000021047	Nova1	9430099M15Rik|G630039L02|Nova-1	neuro-oncological ventral antigen 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78869984-4	chr15	78869887	78870087	+	844.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7203.0	NM_145929	106039.0	Mm.251331	NM_145929	ENSMUSG00000033128	Gga1	4930406E12Rik|AU016030|AW209092	golgi associated, gamma adaptin ear containing, ARF binding protein 1	protein-coding	3.56076289022626	3.28503875250521	1.59110512966541	4.13993383758125	3.5320579927289	3.4104525972537	1.60662249013629	4.07264602493273	-0.0098033396791094	0.994386308819657	0.998431161219273
Merged-chr8-68793902-4	chr8	68793791	68793991	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001293792)	promoter-TSS (NM_001293792)	-38.0	NM_001359129	70885.0	Mm.252421	NM_027590	ENSMUSG00000031864	Ints10	4921521J11Rik|AI462004	integrator complex subunit 10	protein-coding	7.9008142300473	7.60088593051641	7.89782341463439	7.74099933248364	7.73651707431733	7.20285802324889	7.02899652290744	7.37728086621487	-0.44068953998665	0.00840171785615972	0.096064622781008
Merged-chr2-145517558-4	chr2	145517450	145517650	+	839.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053195, intron 4 of 16)	intron (NM_053195, intron 4 of 16)	37432.0	NM_001037929	627302.0	Mm.445953	NM_001037929		Gm14092	-	predicted gene 14092	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-90446600-4	chr3	90446527	90446727	+	982.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12991.0	NM_178876	229543.0	Mm.268564	NM_145540	ENSMUSG00000027933	Ints3	C77668	integrator complex subunit 3	protein-coding	2.52894153685122	1.47395609052385	2.2649194951743	3.25369309065551	2.79788117613928	1.76794699739172	2.66516133502203	3.01395019282149	0.187340018315552	0.830955628950809	0.998431161219273
Merged-chr5-151394143-3	chr5	151394032	151394232	+	574.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045699, intron 3 of 3)	intron (NR_045699, intron 3 of 3)	-12372.0	NR_131166	100042166.0	Mm.443286	NR_131166	ENSMUSG00000097321	Gm3704	-	predicted gene 3704	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-158778015-2	chr2	158777915	158778115	+	888.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027975, intron 1 of 3)	MIRc|SINE|MIR	9916.0	NM_027975	71878.0	Mm.85162	NM_027975	ENSMUSG00000027654	Fam83d	2310007D09Rik|BB104611	family with sequence similarity 83, member D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-13293515-4	chr1	13293441	13293641	+	863.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008678, intron 1 of 22)	intron (NM_008678, intron 1 of 22)	78888.0	NM_001302702	17978.0	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	1.55579276773464	2.1917313528743	1.84280410539684	2.5939428740753	1.71781324357943	1.26797919918655	2.3531950482342	2.27880253321166	-0.318057937900866	0.751914655837134	0.998431161219273
Merged-chr9-64739493-2	chr9	64739393	64739593	+	616.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	-1737.0	NM_017382	53869.0	Mm.1387	NM_017382	ENSMUSG00000004771	Rab11a	-	RAB11A, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-82338942-4	chr15	82338834	82339034	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008669)	promoter-TSS (NM_008669)	-108.0	NM_008669	17939.0	Mm.20325	NM_008669	ENSMUSG00000022453	Naga	-	N-acetyl galactosaminidase, alpha	protein-coding	5.95765242299229	5.55847481130413	6.22622116044789	6.15684495856882	6.04297580576265	5.62540472782442	5.81716660642462	5.94879673906641	-0.141754693166728	0.563068615218573	0.960362415684079
Merged-chr14-66183331-4	chr14	66183233	66183433	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 5 of 30)	RLTR49|LTR|ERVK	30491.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-104401316-4	chr7	104401217	104401417	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42671.0	NM_175648	244183.0	Mm.347647	NM_175648	ENSMUSG00000052749	Trim30b	A530023O14Rik|Trim30-1	tripartite motif-containing 30B	protein-coding	1.2208134112874	1.26721533292195	0.915748689064144	0.894113511643582	1.2323510264412	1.62938781789897	0.722454127752001	0.897916241806691	0.390540942684839	0.775734434430753	0.998431161219273
Merged-chr11-89020090-1	chr11	89019990	89020190	+	618.0	f0_balb.idr	3' UTR (NM_009546, exon 9 of 9)	3' UTR (NM_009546, exon 9 of 9)	20687.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	1.93728676027637	2.29089944906625	2.20940247176347	1.68145479584326	2.21096729524526	1.16652867545362	1.74288438850143	1.12214651267221	-1.08301752364039	0.328552004315242	0.831054170296755
Merged-chr11-107341589-4	chr11	107341501	107341701	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 1 of 9)	intron (NR_153311, intron 1 of 9)	129119.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-35906190-2	chr16	35906090	35906290	+	675.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-32280.0	NM_030253	80285.0	Mm.49074	NM_030253	ENSMUSG00000022906	Parp9	ARTD9|AW214463|BC003281|Bagl|Bal|PARP-9	poly (ADP-ribose) polymerase family, member 9	protein-coding	-1.84436392554074	-1.52091821270385	-1.82290882857571	-1.83054882630441	-1.84220491470818	-1.81159244170985	-1.82080331928423	-1.82918127036376	-1.56828060379516	0.655578384384393	1
Merged-chr16-87652671-3	chr16	87652568	87652768	+	878.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-46286.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	1.34994328102729	1.24922672942462	1.20884275721953	0.840103274909533	1.70214391527077	1.54099323175011	1.0516713791233	1.18263812687875	0.918415127516653	0.473631264962451	0.926125823511231
Merged-chr10-121693330-5	chr10	121693206	121693406	+	591.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177335, exon 13 of 13)	3' UTR (NM_177335, exon 13 of 13)	-46624.0	NM_001359720	270802.0	Mm.209172	NM_173022	ENSMUSG00000053684	BC048403	E030027L10	cDNA sequence BC048403	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-25273456-4	chr4	25273351	25273551	+	872.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026194, intron 6 of 18)	L1MC4|LINE|L1	8370.0	NM_026194	67490.0	Mm.226295	NM_026194	ENSMUSG00000040359	Ufl1	1810074P20Rik|AI429228|Kiaa0776|Maxer|Rcad|mKIAA0776	UFM1 specific ligase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-131983474-2	chr2	131983374	131983574	+	642.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32437.0	NM_001278520	26434.0	Mm.180750	NM_023043	ENSMUSG00000027338	Prnd	AI450264|Dpl|PrPLP|doppel	prion like protein doppel	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-38866045-4	chr6	38865939	38866139	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010433, intron 1 of 14)	intron (NM_010433, intron 1 of 14)	10151.0	NM_010433	15258.0	Mm.23790	NM_010433	ENSMUSG00000061436	Hipk2	1110014O20Rik|B230339E18Rik|Stank	homeodomain interacting protein kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-118961727-4	chr2	118961629	118961829	+	999.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35232.0	NM_028117	72136.0	Mm.486238	NM_028117	ENSMUSG00000074916	Chst14	2600016L03Rik|D4ST-1|D4st1	carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 14	protein-coding	5.33162414861725	5.45191463696742	5.4847155550651	5.19875997135448	4.0158786546303	4.07510290011045	2.88992016719962	4.16027046920753	-1.84444414326748	9.9945944964993e-07	6.47024162422654e-05
Merged-chr4-140159791-4	chr4	140159693	140159893	+	878.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198610, intron 1 of 9)	ORR1E|LTR|ERVL-MaLR	16920.0	NR_153821	102636673.0	Mm.449180	NR_153821		Gm13029	Gm33676	predicted gene 13029	ncRNA	2.63049761691058	3.25253001507302	2.46691464245423	2.97129067252537	2.29063917910383	3.08428165442976	3.59765129703311	2.89152726166779	0.332434728518717	0.630609065153819	0.981465575333797
Merged-chr3-28016015-4	chr3	28015923	28016123	+	806.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008875, intron 1 of 25)	intron (NM_008875, intron 1 of 25)	31852.0	NM_008875	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-5513963-2	chr11	5513863	5514063	+	730.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6678.0	NM_013842	22433.0	Mm.469937	NM_013842	ENSMUSG00000020484	Xbp1	D11Ertd39e|TREB-5|TREB5|XBP-1	X-box binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-72168161-4	chr5	72168010	72168210	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356611)	promoter-TSS (NM_001356611)	79.0	NM_001356611	27784.0	Mm.44223	NM_178599	ENSMUSG00000029213	Commd8	C77770|D5Buc26e	COMM domain containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-110179414-4	chr7	110179296	110179496	+	968.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42307.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-101168179-2	chr4	101168079	101168279	+	593.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146145, intron 11 of 24)	intron (NM_146145, intron 11 of 24)	97103.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-116672568-4	chr6	116672453	116672653	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178045, intron 1 of 10)	intron (NM_178045, intron 1 of 10)	1283.0	NM_178045	213391.0	Mm.257931	NM_178045	ENSMUSG00000042129	Rassf4	3830411C14Rik|AD037|AI586137	Ras association (RalGDS/AF-6) domain family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-67372296-3	chr7	67372189	67372389	+	969.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357324, intron 1 of 11)	CpG	569.0	NM_001291192	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-156539378-1	chr2	156539278	156539478	+	756.0	f0_c57.idr	intron (NM_001006664, intron 21 of 21)	intron (NM_001006664, intron 21 of 21)	-8198.0	NM_026661	68295.0	Mm.253648	NM_026661	ENSMUSG00000027628	Aar2	0610011L14Rik	AAR2 splicing factor homolog	protein-coding	-0.446325955288988	-0.805856900465229	-0.808857063420984	-0.286002941185794	-0.814397493751201	-0.803092924973584	-0.808198674337053	-0.810755415922132	-3.06173579201342	0.302422500462055	1
Merged-chr17-65641916-3	chr17	65641814	65642014	+	865.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146002, intron 1 of 2)	intron (NM_001146002, intron 1 of 2)	290.0	NM_001146002	213272.0	Mm.255732	NM_153519	ENSMUSG00000050612	Txndc2	AU021712|Sptrx-1|Sptrx1|Trx4	thioredoxin domain containing 2 (spermatozoa)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-113113723-2	chr12	113113623	113113823	+	816.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346696, intron 2 of 19)	intron (NM_001346696, intron 2 of 19)	15445.0	NM_054081	116870.0	Mm.212577	NM_054081	ENSMUSG00000021144	Mta1	-	metastasis associated 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128409922-4	chr10	128409831	128410031	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358973)	promoter-TSS (NM_001358973)	-81.0	NM_027257	69917.0	Mm.46614	NM_027257	ENSMUSG00000025374	Nabp2	2610036N15Rik|Obfc2b|SSB1	nucleic acid binding protein 2	protein-coding	6.44258637722691	6.42133884027677	6.51007831152634	6.45581460868457	6.33565874190055	6.44017472514353	5.92718713388272	6.77830730509825	-0.0574552860484558	0.790942954024029	0.998431161219273
Merged-chr4-143216464-3	chr4	143216364	143216564	+	887.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-3755.0	NM_001256380	110593.0	Mm.332020	NM_001081355	ENSMUSG00000057637	Prdm2	4833427P12Rik|E330024L24Rik|Gm1033|Gm19732|KMT8|Riz|Riz1|Znfpr1c1	PR domain containing 2, with ZNF domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-34107195-4	chr13	34107091	34107291	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_046184, intron 1 of 4)	L1MEf|LINE|L1	6081.0	NR_046184	432745.0	Mm.159104	NR_046184	ENSMUSG00000113591	4930447K03Rik	-	RIKEN cDNA 4930447K03 gene	ncRNA	3.87608660012183	3.45400876006822	4.65188879813018	4.43250534384846	4.70413129438656	5.46429370371284	5.08868651837559	5.4833946976334	1.26639967435431	0.00121283089919786	0.0226424457394853
Merged-chr13-75706264-2	chr13	75706161	75706361	+	847.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	-1223.0	NM_138953	192657.0	Mm.21288	NM_138953	ENSMUSG00000001542	Ell2	-	elongation factor RNA polymerase II 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-51921264-4	chr16	51921178	51921378	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MD|LINE|L1	66009.0	NR_153657	629091.0	Mm.364775	NR_153657		Gm29686	-	predicted gene, 29686	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171160741-3	chr1	171160709	171160909	+	725.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008623, exon 8 of 8)	3' UTR (NM_008623, exon 8 of 8)	5291.0	NM_001315500	17528.0	Mm.9986	NM_008623	ENSMUSG00000056569	Mpz	Mpp|P-zero|P0	myelin protein zero	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-21312095-3	chr14	21312014	21312214	+	787.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134079, intron 6 of 10)	intron (NM_134079, intron 6 of 10)	-187656.0	NM_001205241	54169.0	Mm.248967	NM_017479	ENSMUSG00000021767	Kat6b	AI507552|B130044K16Rik|MYST-4|Morf|Myst4|mKIAA0383|qkf|querkopf	K(lysine) acetyltransferase 6B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27642113-2	chr2	27642013	27642213	+	578.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35088.0	NM_011305	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-103112328-2	chr11	103112228	103112428	+	727.666687	f1_balb.idr|f1_c57bl6.idr	TTS (NM_025988)	TTS (NM_025988)	-3997.0	NM_138753	192231.0	Mm.8763	NM_138753	ENSMUSG00000048878	Hexim1	7330426E13Rik|CLP-1|Clp1|HIS1	hexamethylene bis-acetamide inducible 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-51451241-2	chr10	51451141	51451341	+	948.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29371.0	NM_008147	14727.0	Mm.439661	NM_008147	ENSMUSG00000112023	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-150861273-4	chr2	150861180	150861380	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151505, intron 1 of 12)	B2_Mm2|SINE|B2	-18710.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-128657725-2	chr4	128657625	128657825	+	747.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001195130, intron 1 of 14)	intron (NM_001195130, intron 1 of 14)	3023.0	NM_001195130	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117375997-2	chr10	117375897	117376097	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013391, intron 1 of 9)	CpG	976.0	NM_001013391	432508.0	Mm.478881	NM_001013391	ENSMUSG00000055531	Cpsf6	4733401N12Rik|AI256641|CFIM|CFIM68|HPBRII-4|HPBRII-7	cleavage and polyadenylation specific factor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-119963436-4	chr9	119963322	119963522	+	947.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028735, intron 21 of 28)	intron (NM_028735, intron 21 of 28)	19601.0	NM_001357560	215418.0	Mm.491094	NM_153287	ENSMUSG00000032515	Csrnp1	4931429D10Rik|Axud1|CSRNP-1|URAX1|taip-3	cysteine-serine-rich nuclear protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101554321-2	chr7	101554221	101554421	+	610.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007490, intron 2 of 2)	intron (NM_007490, intron 2 of 2)	1481.0	NM_007490	11871.0	Mm.439746	NM_007490	ENSMUSG00000092517	Art2a-ps	ARTC2|Art2a|Ly92a|Rt-6|Rt6|Rt6-1	ADP-ribosyltransferase 2a, pseudogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30679155-4	chr2	30679058	30679258	+	947.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1147.0	NR_136917	665635.0	Mm.450149	NR_136917		Gm14486	-	predicted gene 14486	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-79125886-3	chr11	79125767	79125967	+	807.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013571, intron 1 of 17)	intron (NM_013571, intron 1 of 17)	20606.0	NM_013571	16706.0	Mm.4745	NM_013571	ENSMUSG00000018334	Ksr1	AW492498|B-KSR1|D11Bhm183e|D11Bhm184e|Ksr|RSU2|hb|mKSR1	kinase suppressor of ras 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-5960775-4	chr11	5960675	5960875	+	937.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019661, intron 2 of 6)	intron (NM_019661, intron 2 of 6)	5017.0	NM_019661	56418.0	Mm.294821	NM_019661	ENSMUSG00000002741	Ykt6	0610042I15Rik|1810013M05Rik|AW105923	YKT6 v-SNARE homolog (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-102940381-4	chr2	102940294	102940494	+	907.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1H|LTR|ERVL-MaLR	-38729.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-63180279-2	chr1	63180179	63180379	+	617.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_018796, exon 6 of 6)	3' UTR (NM_018796, exon 6 of 6)	1256.0	NR_028558	100217464.0	Mm.484706	NR_028558	ENSMUSG00000064602	Snora41	MBI-83	small nucleolar RNA, H/ACA box 41	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-110661938-2	chr9	110661838	110662038	+	670.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_028312, intron 1 of 6)	CT-rich|Low_complexity|Low_complexity	5435.0	NM_028312	72654.0	Mm.249115	NM_028312	ENSMUSG00000019659	Ccdc12	2700094L05Rik|C76605	coiled-coil domain containing 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-24767286-1	chr1	24767186	24767386	+	689.0	f1_balb.idr	TTS (NM_001310483)	TTS (NM_001310483)	88368.0	NM_001310483	68421.0	Mm.336563	NM_026719	ENSMUSG00000073725	Lmbrd1	0910001K20Rik|AV347960	LMBR1 domain containing 1	protein-coding	-1.107570214359	-1.08653447535648	-1.09741130683982	-0.688779236681923	-0.841983873845991	-1.08417742060026	-1.09494903060535	-1.10420625070982	-0.619773806471497	0.851573714113283	1
Merged-chr10-40348735-4	chr10	40348632	40348832	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001168304)	promoter-TSS (NM_001168304)	-576.0	NM_001291817	78334.0	Mm.200924	NM_198164	ENSMUSG00000038481	Cdk19	2700084L06Rik|AI845279|AW228747|CDK11|Cdc2l6|mKIAA1028	cyclin-dependent kinase 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-23544403-4	chr13	23544294	23544494	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178197)	promoter-TSS (NM_178197)	342.0	NM_013548	260423.0	Mm.221389	NM_013548	ENSMUSG00000100210	Hist1h3f	H3.2-221|Hist1	histone cluster 1, H3f	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-92356981-2	chr8	92356881	92357081	+	733.166687	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018826)	promoter-TSS (NM_018826)	-815.0	NM_018826	54352.0	Mm.101153	NM_018826	ENSMUSG00000031737	Irx5	-	Iroquois homeobox 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-1760-1	chr4	1660	1860	+	1000.0	f1_c57bl6.idr	Intergenic	Intergenic	-3170323.0	NM_001167534	100312470.0	Mm.480297	NM_001167534	ENSMUSG00000115072	Vmn1r2	Gm11776	vomeronasal 1 receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-51652440-4	chr3	51652335	51652535	+	905.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8744.0	NM_174995	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-155734518-4	chr4	155734389	155734589	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001101506)	promoter-TSS (NM_001101506)	-315.0	NM_001101506	381582.0	Mm.379515	NM_001101506	ENSMUSG00000084845	Tmem240	EG381582|Gm5151	transmembrane protein 240	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-139574475-4	chr4	139574374	139574574	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001205173)	promoter-TSS (NM_001205173)	-246.0	NM_001205173	212632.0	Mm.30464	NM_183148	ENSMUSG00000041025	Iffo2	C79267	intermediate filament family orphan 2	protein-coding	7.77866314103671	7.58136723390456	8.0733038633048	7.85355840434176	7.59306433121868	7.4982016635261	7.59435249575947	7.61041382487451	-0.26730688900626	0.0622152573938863	0.370267191573337
Merged-chr10-60370866-2	chr10	60370766	60370966	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001159572, exon 7 of 7)	3' UTR (NM_001159572, exon 7 of 7)	24015.0	NM_028732	74048.0	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-116579803-2	chr10	116579703	116579903	+	730.900024	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359563, intron 1 of 13)	intron (NM_001359563, intron 1 of 13)	733.0	NM_001359250	72068.0	Mm.351553	NM_028082	ENSMUSG00000020166	Cnot2	2600016M12Rik|2810470K03Rik|AA537049|AA959607|AW557563|C79650	CCR4-NOT transcription complex, subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44087935-6	chr9	44087829	44088029	+	917.305542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198091, intron 1 of 11)	intron (NM_198091, intron 1 of 11)	3009.0	NM_198091	53376.0	Mm.272770	NM_016808	ENSMUSG00000032010	Usp2	B930035K21Rik|Ubp41	ubiquitin specific peptidase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-163583974-3	chr2	163583884	163584084	+	845.755554	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18330.0	NM_181734	76080.0	Mm.89828	NM_029512	ENSMUSG00000017679	Ttpal	3110080A02Rik|5830472M02Rik	tocopherol (alpha) transfer protein-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-137175764-4	chr4	137175674	137175874	+	925.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-10708.0	NR_040443	100503595.0	Mm.421314	NR_040443	ENSMUSG00000085833	Gm13003	-	predicted gene 13003	ncRNA	4.50425165806684	5.08518750504417	5.63763812274511	4.35245638213115	5.42190483141858	4.85987156619593	4.33235056707934	4.07054024227525	-0.2504720640063	0.553153897121658	0.959658647102134
Merged-chr12-16870975-4	chr12	16870854	16871054	+	999.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24024.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	3.70408862279194	3.65907236510137	3.75478988987071	3.18718766092469	3.04754375138984	3.20099080213878	3.78246372635402	3.20368310262894	-0.400306532096944	0.462984622867039	0.921412612820757
Merged-chr3-96578346-4	chr3	96578248	96578448	+	993.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001293701, exon 7 of 7)	3' UTR (NM_001293701, exon 7 of 7)	-11547.0	NR_040409	100038464.0	Mm.475126	NR_040409	ENSMUSG00000074398	Gm15441	-	predicted gene 15441	ncRNA	0.987853756648839	0.571620292658534	1.53956036083182	0.549879668634534	1.11351378953642	0.57433740576749	1.5559844644429	0.551559065414318	0.156409576570955	0.925102508724788	0.998431161219273
Merged-chr5-53929672-4	chr5	53929553	53929753	+	976.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68870.0	NM_001081103	116873.0	Mm.265985	NM_054083	ENSMUSG00000039156	Stim2	-	stromal interaction molecule 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-126440789-4	chr4	126440683	126440883	+	933.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153403, intron 16 of 18)	MIRb|SINE|MIR	-11241.0	NM_153402	214150.0	Mm.440915	NM_153402	ENSMUSG00000028842	Ago3	AW048688|C130014L07Rik|Eif2c3	argonaute RISC catalytic subunit 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-35565299-3	chr8	35565208	35565408	+	878.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC3|LINE|L1	-22490.0	NM_001081279	52065.0	Mm.103246	NM_001081279	ENSMUSG00000070056	Mfhas1	2310066G09Rik|D8Ertd91e	malignant fibrous histiocytoma amplified sequence 1	protein-coding	2.17161405862901	3.19422351177855	2.70980145139494	3.2733980234958	3.53924307519588	3.94792210334925	2.5781022467624	4.15321328686854	1.23582038690579	0.0559114281349588	0.348420350465669
Merged-chr4-89145586-4	chr4	89145455	89145655	+	952.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024433, intron 1 of 7)	intron (NM_024433, intron 1 of 7)	8185.0	NM_024433	66902.0	Mm.28500	NM_024433	ENSMUSG00000062937	Mtap	1300019I21Rik|MSAP	methylthioadenosine phosphorylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72098893-3	chr6	72098760	72098960	+	634.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011375, intron 1 of 6)	intron (NM_011375, intron 1 of 6)	1252.0	NM_011375	20454.0	Mm.38248	NM_011375	ENSMUSG00000056091	St3gal5	3S-T|Siat9|[a]2	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-120529837-2	chr1	120529737	120529937	+	645.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER20B|LTR|ERVK	-24813.0	NM_010766	17167.0	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-73909226-2	chr12	73909126	73909326	+	827.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010431, intron 1 of 14)	intron (NM_010431, intron 1 of 14)	1359.0	NM_001313919	15251.0	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-5421632-3	chr5	5421527	5421727	+	748.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41376.0	NM_011074	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-88832638-2	chr18	88832538	88832738	+	957.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61569.0	NM_018821	54607.0	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-43466589-2	chr1	43466489	43466689	+	571.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010879, intron 1 of 4)	intron (NM_010879, intron 1 of 4)	20838.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-79322874-2	chr15	79322774	79322974	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016915, intron 1 of 15)	intron (NM_016915, intron 1 of 15)	5497.0	NM_016915	53357.0	Mm.155620	NM_016915	ENSMUSG00000042632	Pla2g6	BB112799|PNPLA9|iPLA(2)beta|iPLA2|iPLA2beta	phospholipase A2, group VI	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-59416633-3	chr4	59416497	59416697	+	624.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163288, intron 3 of 16)	intron (NM_001163288, intron 3 of 16)	22036.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-86840711-3	chr11	86840623	86840823	+	923.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33063.0	NM_026191	67487.0	Mm.260627	NM_026191	ENSMUSG00000018425	Dhx40	2410016C14Rik|ARG147|DDX40|PAD	DEAH (Asp-Glu-Ala-His) box polypeptide 40	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-125052254-4	chr8	125052163	125052363	+	687.020813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVL-int|LTR|ERVL	-1932.0	NM_174853	244667.0	Mm.233504	NM_170596	ENSMUSG00000043051	Disc1	-	disrupted in schizophrenia 1	protein-coding	3.88881664838252	4.27738753014066	4.08131588402313	4.08886540466661	4.0756761608428	4.67103465872294	3.66820228329023	3.55331204626634	-0.0331992831555032	0.942357117828708	0.998431161219273
Merged-chr1-86599996-4	chr1	86599916	86600116	+	851.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360887, intron 5 of 6)	intron (NM_001360887, intron 5 of 6)	17095.0	NM_001360887	26895.0	Mm.12973	NM_172974	ENSMUSG00000026240	Cops7b	D1Wsu66e|E130114M23	COP9 signalosome subunit 7B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-25774482-2	chr5	25774382	25774582	+	552.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310504, intron 1 of 10)	MER68B|LTR|ERVL	14509.0	NM_001004365	242894.0	Mm.150319	NM_001004365	ENSMUSG00000056367	Actr3b	9630005C02|ARP11|AW047569|Arp3b|Arp3beta	ARP3 actin-related protein 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-124684706-4	chr2	124684610	124684810	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31129.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-88576379-4	chr1	88576271	88576471	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24854.0	NR_037971	100503197.0	Mm.99352	NR_037971	ENSMUSG00000100798	Gm19589	-	predicted gene, 19589	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-44936889-2	chr12	44936793	44936993	+	598.5	f0_c57.idr|f1_c57bl6.idr	intron (NM_144552, intron 2 of 5)	intron (NM_144552, intron 2 of 5)	137590.0	NM_144552	217517.0	Mm.285400	NM_144552	ENSMUSG00000046314	Stxbp6	BC024598|C85317	syntaxin binding protein 6 (amisyn)	protein-coding	1.5366227341595	0.703835821610892	0.279256817840624	0.633044436135763	0.260707810252609	0.291172501363046	0.28141786767368	0.638542956725823	-2.92339239223875	0.119538645937145	1
Merged-chr1-122938475-1	chr1	122938375	122938575	+	616.0	f1_c57bl6.idr	Intergenic	L1_Mus1|LINE|L1	733330.0	NR_151524	102638832.0	Mm.112794	NR_151524	ENSMUSG00000099960	Gm28590	-	predicted gene 28590	ncRNA	1.24633431015775	0.847076432852651	1.66807252428904	0.596112053351487	1.51561174302609	0.621143815444404	0.608661328254431	0.798727334330926	-0.808572125336871	0.606126366068446	0.974576632476413
Merged-chr8-27207207-1	chr8	27207107	27207307	+	558.0	f1_c57bl6.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-4660.0	NM_029674	76615.0	Mm.272794	NM_029674	ENSMUSG00000039720	Got1l1	1700083M11Rik	glutamic-oxaloacetic transaminase 1-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4102160-2	chr19	4102060	4102260	+	806.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008851, intron 1 of 22)	intron (NM_008851, intron 1 of 22)	1538.0	NM_008851	18739.0	Mm.1860	NM_008851	ENSMUSG00000024851	Pitpnm1	DRES9|Mpt-1|Nir-2|PITPnm 1|Pitpnm|R75447|Rd9|RdgB|RdgB1	phosphatidylinositol transfer protein, membrane-associated 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-122702469-3	chr2	122702383	122702583	+	832.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001290993, exon 1 of 6)	5' UTR (NM_001290993, exon 1 of 6)	180.0	NM_011774	22785.0	Mm.27801	NM_011774	ENSMUSG00000005802	Slc30a4	Znt4|lm|znT-4	solute carrier family 30 (zinc transporter), member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-65585174-2	chr6	65585074	65585274	+	611.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5224.0	NM_001001495	414084.0	Mm.117558	NM_001001495	ENSMUSG00000044162	Tnip3	9030611K07Rik|ABIN-3|LIND	TNFAIP3 interacting protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-64703712-4	chr9	64703609	64703809	+	837.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001134399, intron 23 of 24)	MIRc|SINE|MIR	34047.0	NM_017382	53869.0	Mm.1387	NM_017382	ENSMUSG00000004771	Rab11a	-	RAB11A, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-110721326-2	chr8	110721226	110721426	+	761.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198625)	promoter-TSS (NM_198625)	-150.0	NM_198625	244654.0	Mm.490385	NM_198625	ENSMUSG00000033763	Mtss1l	ABBA	metastasis suppressor 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118257412-2	chr11	118257312	118257512	+	691.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8820.0	NM_011180	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43045885-4	chr4	43045779	43045979	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045567, intron 1 of 7)	intron (NR_045567, intron 1 of 7)	341.0	NR_045567	230088.0	Mm.260162	NM_172691	ENSMUSG00000036002	Fam214b	B230312A22Rik	family with sequence similarity 214, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-45945166-2	chr9	45945066	45945266	+	588.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_172257, exon 15 of 26)	exon (NM_172257, exon 15 of 26)	-5576.0	NR_106055	102465659.0		NR_106055	ENSMUSG00000098327	Mir7087	Gm27273|mmu-mir-7087	microRNA 7087	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-108083574-4	chr4	108083464	108083664	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011327, intron 10 of 15)	RSINE1|SINE|B4	-3793.0	NR_105823	102465213.0		NR_105823	ENSMUSG00000098980	Mir6397	Gm28004|mmu-mir-6397	microRNA 6397	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128516331-2	chr10	128516231	128516431	+	598.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011843, intron 21 of 30)	intron (NM_011843, intron 21 of 30)	-4301.0	NR_105881	102465552.0		NR_105881	ENSMUSG00000099292	Mir6916	Gm27721|mmu-mir-6916	microRNA 6916	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-25897746-4	chr15	25897649	25897849	+	993.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034851, intron 3 of 8)	intron (NM_001034851, intron 3 of 8)	-35803.0	NM_001277318	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-120665906-4	chr10	120665790	120665990	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-99842.0	NR_038000	70874.0	Mm.427286	NR_038000	ENSMUSG00000044544	4921513I03Rik	-	RIKEN cDNA 4921513I03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131275348-4	chr1	131275272	131275472	+	901.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019777, intron 4 of 21)	intron (NM_019777, intron 4 of 21)	4191.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	-0.584669271637881	-0.577008963119113	-0.299970655604964	-0.581489473833712	-0.259317606295738	-0.576432009114418	-0.2937587189513	-0.581151938876115	1.13118004872254	0.678179601406376	1
Merged-chr18-4354703-4	chr18	4354585	4354785	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040328, intron 2 of 3)	intron (NR_040328, intron 2 of 3)	1138.0	NR_040328	73915.0	Mm.482777	NR_040328		4833419F23Rik	-	RIKEN cDNA 4833419F23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-38658623-3	chr2	38658468	38658668	+	871.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14662.0	NM_011187	19177.0	Mm.389251	NM_011187	ENSMUSG00000026750	Psmb7	AU020723|MC14	proteasome (prosome, macropain) subunit, beta type 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-51480209-1	chr10	51480109	51480309	+	1000.0	f0_balb.idr	promoter-TSS (NM_001291893)	promoter-TSS (NM_001291893)	-403.0	NM_008147	14727.0	Mm.439661	NM_008147	ENSMUSG00000112023	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-45018717-3	chr19	45018711	45018911	+	753.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001130526, intron 1 of 4)	intron (NM_001130526, intron 1 of 4)	676.0	NM_001130526	226154.0	Mm.28204	NM_145503	ENSMUSG00000035342	Lzts2	BC014695|LAPSER1|mKIAA1813	leucine zipper, putative tumor suppressor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3895431-4	chr12	3895335	3895535	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153743, intron 1 of 17)	intron (NM_153743, intron 1 of 17)	3691.0	NM_153743	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-129260271-2	chr6	129260171	129260371	+	633.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15098.0	NM_001033122	12515.0	Mm.74745	NM_001033122	ENSMUSG00000030156	Cd69	5830438K24Rik|AI452015|AIM|VEA	CD69 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-25798779-2	chr15	25798679	25798879	+	738.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001353142, intron 10 of 20)	intron (NM_001353142, intron 10 of 20)	24766.0	NM_001353141	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-10052269-3	chr18	10052101	10052301	+	756.571411	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MMERGLN-int|LTR|ERV1	-22052.0	NM_021522	59025.0	Mm.329277	NM_021522	ENSMUSG00000047879	Usp14	2610005K12Rik|2610037B11Rik|AW107924|C78769|ax|nmf375	ubiquitin specific peptidase 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-129395792-2	chr6	129395692	129395892	+	706.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1505.0	NM_001204253	56760.0	Mm.30700	NM_019985	ENSMUSG00000030159	Clec1b	1810061I13Rik|Clec-2|Clec2	C-type lectin domain family 1, member b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-27213827-2	chr3	27213727	27213927	+	832.599976	f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 1 of 4)	intron (NM_178772, intron 1 of 4)	30823.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114874742-2	chr11	114874642	114874842	+	743.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15299.0	NM_001347654	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-17629249-4	chr6	17629144	17629344	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7766.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-38729368-2	chr16	38729268	38729468	+	587.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12891.0	NR_152434	56375.0	Mm.182377	NM_019804	ENSMUSG00000022793	B4galt4	9130402O08Rik|B4galt-IV|b4Gal-T4|beta4Gal-T4|beta4GalT-IV	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-66385804-1	chr5	66385704	66385904	+	540.0	f0_balb.idr	intron (NM_001310626, intron 8 of 15)	MLT1H|LTR|ERVL-MaLR	-48139.0	NM_001201416	11787.0	Mm.5159	NM_009686	ENSMUSG00000029207	Apbb2	2310007D03Rik|FE65L1|Rirl1|TR2L|Zfra	amyloid beta (A4) precursor protein-binding, family B, member 2	protein-coding	0.615655554546755	0.354957111342936	1.14809469441939	0.904729881462281	0.332030587255094	0.356745006779428	0.348755664257456	0.912111004348914	-1.57750629168491	0.395138940216522	1
Merged-chr2-163756002-3	chr2	163755901	163756101	+	907.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5762.0	NM_001272052	11486.0	Mm.388	NM_007398	ENSMUSG00000017697	Ada	-	adenosine deaminase	protein-coding	2.61960001242212	1.53077711628358	3.10995823053523	1.40250730799672	3.48783710190458	3.14214962747177	3.6510468201307	4.92458531059402	2.5801074709445	0.0309002106399508	0.242525552065938
Merged-chr4-34495195-4	chr4	34495088	34495288	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55427.0	NM_001007589	433693.0	Mm.389532	NM_026019	ENSMUSG00000028291	Akirin2	2700059D21Rik|AA114675|AA522011|AU019887|Akirin-2	akirin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-4083619-2	chr7	4083519	4083719	+	679.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_033568, intron 6 of 8)	B3A|SINE|B2	-20415.0	NM_001302676	52855.0	Mm.290880	NM_178611	ENSMUSG00000055541	Lair1	5133400O11Rik|BB115266|D7Bwg0421e|Lair-1	leukocyte-associated Ig-like receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-106809901-2	chr1	106809803	106810003	+	938.5	f0_balb.idr|f1_balb.idr	Intergenic	RLTR20C2_MM|LTR|ERVK	-13178.0	NM_009190	20479.0	Mm.18705	NM_009190	ENSMUSG00000009907	Vps4b	8030489C12Rik|Skd1	vacuolar protein sorting 4B	protein-coding	0.402655116606122	0.448227409935095	0.433747364415287	0.422287192904628	1.65973765961898	1.09941120611852	1.70696299490623	0.424308243986048	4.95034224309182	0.0044006799583086	0.0605497226373699
Merged-chr15-76672167-2	chr15	76672067	76672267	+	569.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_152559, intron 1 of 8)	intron (NR_152559, intron 1 of 8)	524.0	NM_033371	73062.0	Mm.322901	NM_033371	ENSMUSG00000033819	Ppp1r16a	2900084E10Rik|Mypt3|R75527	protein phosphatase 1, regulatory (inhibitor) subunit 16A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111166126-4	chr12	111166007	111166207	+	991.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286122)	promoter-TSS (NM_001286122)	-263.0	NM_001286122	22031.0	Mm.27431	NM_011632	ENSMUSG00000021277	Traf3	AI528849|CAP-1|CD40bp|CRAF1|LAP1|T-BAM|amn	TNF receptor-associated factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116028504-4	chr11	116028368	116028568	+	945.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1848.0	NM_001286006	217331.0	Mm.297706	NM_172569	ENSMUSG00000020770	Unk	B230379M23Rik|Unkh|Zc3h5|Zc3hdc5|mKIAA1753	unkempt family zinc finger	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41278721-3	chr19	41278619	41278819	+	934.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 16 of 16)	intron (NM_031376, intron 16 of 16)	-14715.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-98895073-2	chr15	98894973	98895173	+	786.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_007857, exon 2 of 3)	exon (NM_007857, exon 2 of 3)	3467.0	NM_007857	13363.0	Mm.324688	NM_007857	ENSMUSG00000023000	Dhh	C78960	desert hedgehog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-43089716-4	chr17	43089631	43089831	+	993.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_178589)	TTS (NM_178589)	68560.0	NR_045155	545207.0	Mm.329050	NR_045153		E130008D07Rik	-	RIKEN cDNA E130008D07 gene	ncRNA	6.17656286818371	6.27292845607566	6.16173322542658	6.47133028095454	6.44871195599207	6.42385701325771	6.66369184204999	6.88757520165157	0.370119762184106	0.0716127420781659	0.403384826034664
Merged-chr5-101882287-2	chr5	101882187	101882387	+	569.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 44 of 66)	intron (NM_172882, intron 44 of 66)	117157.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-93358513-3	chr15	93358434	93358634	+	863.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21599.0	NM_024189	67057.0	Mm.4714	NM_024189	ENSMUSG00000022634	Yaf2	2810021M11Rik	YY1 associated factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111820923-2	chr12	111820823	111821023	+	636.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_026752, intron 1 of 6)	intron (NM_026752, intron 1 of 6)	6753.0	NM_026752	68520.0	Mm.390497	NM_026752	ENSMUSG00000021286	Zfyve21	1110013H04Rik|AW558780|C85416	zinc finger, FYVE domain containing 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-29540498-4	chr6	29540398	29540598	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001347079)	TTS (NM_001347079)	11216.0	NM_001252382	27056.0	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-108578713-4	chr9	108578615	108578815	+	999.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031392)	promoter-TSS (NM_031392)	-45.0	NM_031392	83669.0	Mm.335454	NM_031392	ENSMUSG00000066357	Wdr6	mWDR6	WD repeat domain 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26698903-2	chr17	26698803	26699003	+	795.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_025272, intron 3 of 3)	intron (NM_025272, intron 3 of 3)	-16747.0	NM_029870	77128.0	Mm.275414	NM_029870	ENSMUSG00000048249	Crebrf	A930001N09Rik|LRF	CREB3 regulatory factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-110903426-4	chr13	110903326	110903526	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_131193)	promoter-TSS (NR_131193)	-73.0	NR_131193	75139.0	Mm.490931	NR_131193	ENSMUSG00000114472	Gm38397	-	predicted gene, 38397	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-34814947-2	chr11	34814847	34815047	+	967.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_027411, intron 10 of 11)	intron (NM_027411, intron 10 of 11)	18694.0	NM_027411	70385.0	Mm.194368	NM_027411	ENSMUSG00000069910	Spdl1	1700018I02Rik|2600001J17Rik|2810049B11Rik|AA409762|Ccdc99	spindle apparatus coiled-coil protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-80150263-4	chr2	80150158	80150358	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20600.0	NM_001355140	18573.0	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-86083594-2	chr12	86083494	86083694	+	832.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029601, intron 1 of 7)	intron (NM_029601, intron 1 of 7)	1033.0	NM_001199843	76411.0	Mm.292345	NM_029601	ENSMUSG00000007867	Ift43	1700019E19Rik|R75064	intraflagellar transport 43	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-11041498-2	chr8	11041398	11041598	+	595.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_046017, intron 1 of 4)	B3A|SINE|B2	-33068.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-126874985-2	chr2	126874885	126875085	+	848.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164325, intron 1 of 38)	B2_Mm1a|SINE|B2	1276.0	NM_001164325	58800.0	Mm.244705	NM_021450	ENSMUSG00000027365	Trpm7	2310022G15Rik|4833414K03Rik|5033407O22Rik|CHAK|CHAK1|LTrpC-7|Ltpr7|Ltrpc7|TRPPLIK	transient receptor potential cation channel, subfamily M, member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-110409557-1	chr9	110409457	110409657	+	544.0	f1_balb.idr	Intergenic	B3|SINE|B2	-1347.0	NM_001081043	104831.0	Mm.335477	NM_001081043	ENSMUSG00000036057	Ptpn23	AI462446|PTP-TD14	protein tyrosine phosphatase, non-receptor type 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-117210555-4	chr4	117210430	117210630	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27906.0	NM_134471	73804.0	Mm.247651	NM_134471	ENSMUSG00000028678	Kif2c	4930402F02Rik|ESTM5|Knsl6|MCAK|X83316	kinesin family member 2C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-36725276-4	chr16	36725187	36725387	+	787.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285788, intron 7 of 7)	intron (NM_001285788, intron 7 of 7)	31309.0	NM_001285791	106347.0	Mm.17807	NM_134109	ENSMUSG00000022900	Ildr1	AU041483|AU044638	immunoglobulin-like domain containing receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-55106830-4	chr11	55106639	55106839	+	976.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010299, intron 2 of 3)	intron (NM_010299, intron 2 of 3)	8754.0	NM_010299	14667.0	Mm.287807	NM_010299	ENSMUSG00000000594	Gm2a	AA408702|AW215435|GM2-AP|SAP-3	GM2 ganglioside activator protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-101978274-2	chr5	101978174	101978374	+	578.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 4 of 66)	intron (NM_172882, intron 4 of 66)	91647.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	-0.155426321343476	-0.39854935488165	-0.402280706496146	0.199481574140687	-0.409190205885258	-0.397706317703888	-0.401458937177659	-0.109711837974934	-1.63891712462398	0.523312298028028	1
Merged-chr9-118768148-2	chr9	118768048	118768248	+	713.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 1 of 13)	intron (NM_001113514, intron 1 of 13)	56456.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-67359384-1	chr17	67359284	67359484	+	553.0	f1_c57bl6.idr	Intergenic	Intergenic	-4893.0	NM_001357625	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-106663923-1	chr6	106663823	106664023	+	558.0	f1_c57bl6.idr	intron (NM_001109749, intron 17 of 25)	intron (NM_001109749, intron 17 of 25)	85114.0	NM_008370	16192.0	Mm.3448	NM_008370	ENSMUSG00000005364	Il5ra	CD125|CDw125|Il5r	interleukin 5 receptor, alpha	protein-coding	2.70250388601552	3.87625352835529	1.95248459636334	2.85771253999222	2.4126380567598	1.7945060679343	3.56670855775965	1.90188551575544	-0.683581028295669	0.417930559285634	0.897981885800328
Merged-chr1-143803747-4	chr1	143803628	143803828	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019562, intron 10 of 10)	intron (NM_019562, intron 10 of 10)	26450.0	NM_019562	56207.0	Mm.261004	NM_019562	ENSMUSG00000018189	Uchl5	5830413B11Rik|Uch37	ubiquitin carboxyl-terminal esterase L5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-96883150-1	chr7	96883050	96883250	+	619.0	f0_balb.idr	intron (NM_011858, intron 27 of 32)	intron (NM_011858, intron 27 of 32)	-68377.0	NM_153591	244141.0	Mm.274864	NM_153591	ENSMUSG00000018995	Nars2	AI875199	asparaginyl-tRNA synthetase 2 (mitochondrial)(putative)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-56168049-3	chr13	56167945	56168145	+	850.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10840.0	NM_145976	212937.0	Mm.116697	NM_145976	ENSMUSG00000049625	Tifab	-	TRAF-interacting protein with forkhead-associated domain, family member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-84957878-4	chr1	84957769	84957969	+	979.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-22786.0	NM_027921	71781.0	Mm.158754	NM_027921	ENSMUSG00000026220	Slc16a14	1110004H10Rik	solute carrier family 16 (monocarboxylic acid transporters), member 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-44400336-4	chr10	44400235	44400435	+	939.1083369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40659.0	NR_035450	100316688.0		NR_035450	ENSMUSG00000089260	Mir1929	mir-1929|mmu-mir-1929	microRNA 1929	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-69509758-4	chr13	69509662	69509862	+	924.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198600, intron 5 of 12)	B2_Mm2|SINE|B2	24102.0	NM_198600	210106.0	Mm.315959	NM_198600	ENSMUSG00000034575	Papd7	LAK-1|POLK|Pols|TRF4|TRF4-1	PAP associated domain containing 7	protein-coding	3.68746388200242	3.67403110903867	3.46543239013725	3.61084019431762	3.30893966671834	3.70049663482113	4.17589504517051	4.11087213931746	0.374092770004277	0.45102249408694	0.917180997297476
Merged-chr5-114659844-1	chr5	114659744	114659944	+	630.0	f1_c57bl6.idr	Intergenic	B4|SINE|B4	-1423.0	NM_022017	63873.0	Mm.266450	NM_022017	ENSMUSG00000014158	Trpv4	0610033B08Rik|OTRPC4|Trp12|VR-OAC|VRL-2|VROAC	transient receptor potential cation channel, subfamily V, member 4	protein-coding	1.03017329570428	2.79532121625856	2.37039470148531	2.20104489924698	2.27343096108151	1.13204394449256	1.58408269241979	1.32754784878216	-1.42356400461133	0.208453616193957	0.697571537865869
Merged-chr17-47974335-1	chr17	47974235	47974435	+	677.0	f1_c57bl6.idr	Intergenic	CpG	-49703.0	NM_001110825	74123.0	Mm.240062	NM_028767	ENSMUSG00000023991	Foxp4	1200010K03Rik|2310007G05Rik|mFKHLA	forkhead box P4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-170867020-4	chr1	170866909	170867109	+	853.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081304, intron 1 of 15)	intron (NM_001081304, intron 1 of 15)	762.0	NM_001081304	226641.0	Mm.377046	NM_001081304	ENSMUSG00000026663	Atf6	9130025P16Rik|9630036G24|AA789574|Atf6alpha|ESTM49	activating transcription factor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-150165040-4	chr1	150164949	150165149	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_110420)	promoter-TSS (NR_110420)	-101.0	NR_110420	102639566.0	Mm.417208	NR_110420	ENSMUSG00000097754	Ptgs2os2	Gm26687|Linc-cox2|Lincrna-cox2	prostaglandin-endoperoxide synthase 2, opposite strand 2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-139263371-3	chr1	139263251	139263451	+	895.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133239, intron 5 of 11)	intron (NM_133239, intron 5 of 11)	113725.0	NM_133239	170788.0	Mm.95700	NM_133239	ENSMUSG00000063681	Crb1	7530426H14Rik|A930008G09Rik	crumbs family member 1, photoreceptor morphogenesis associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-117500858-2	chr5	117500805	117501005	+	847.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001312914, intron 2 of 19)	intron (NM_001312914, intron 2 of 19)	86903.0	NM_001312914	333050.0	Mm.437947	NM_001034873	ENSMUSG00000061578	Ksr2	-	kinase suppressor of ras 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-74210373-2	chr18	74210273	74210473	+	578.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1-int|LTR|ERVL-MaLR	-2555.0	NM_025581	66468.0	Mm.283406	NM_025581	ENSMUSG00000036223	Ska1	2810433K01Rik|AV117428	spindle and kinetochore associated complex subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-59883271-2	chr10	59883171	59883371	+	660.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019965, intron 1 of 8)	intron (NM_019965, intron 1 of 8)	3680.0	NM_019965	56709.0	Mm.103610	NM_019965	ENSMUSG00000020109	Dnajb12	Dj10|mDj10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-26530533-3	chr14	26530425	26530625	+	625.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310445, intron 1 of 22)	intron (NM_001310445, intron 1 of 22)	4099.0	NM_032008	83997.0	Mm.36769	NM_032008	ENSMUSG00000021870	Slmap	D330001L02Rik|Miranda|Slap|mKIAA1601	sarcolemma associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-84970916-4	chr12	84970790	84970990	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178065)	promoter-TSS (NM_178065)	-4.0	NM_178065	68497.0	Mm.24446	NM_178065	ENSMUSG00000042350	Arel1	1110018G07Rik|AI649076|AW610792|Kiaa0317|mKIAA0317	apoptosis resistant E3 ubiquitin protein ligase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-67494764-4	chr7	67494592	67494792	+	707.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-121834.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	0.055188211186082	0.3368330623846	0.0770761524394438	1.5548058059266	0.253201255165689	0.0896644423181759	0.0793670264473003	0.46986868374344	-2.35585309440101	0.221037243611748	1
Merged-chr14-64917275-2	chr14	64917175	64917375	+	666.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177338, intron 1 of 9)	intron (NM_177338, intron 1 of 9)	32582.0	NM_177338	219150.0	Mm.344074	NM_177338	ENSMUSG00000021972	Hmbox1	AI451877|AI604847|F830020C16Rik	homeobox containing 1	protein-coding	-1.26712529267432	-1.23964170725001	-1.0864442713244	-1.25857937973885	-1.2666847622568	-1.23738860219653	-1.24768516780346	-0.827969198863219	1.29001860635181	0.701525239753992	1
Merged-chr11-70680111-4	chr11	70680026	70680226	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001190379, intron 8 of 20)	intron (NM_001190379, intron 8 of 20)	7979.0	NM_001190376	216874.0	Mm.473726	NM_178116	ENSMUSG00000040712	Camta2	Kiaa0909-hp|mKIAA0909	calmodulin binding transcription activator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95670721-3	chr3	95670619	95670819	+	792.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11998.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-86190255-2	chr15	86190155	86190355	+	773.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4114.0	NM_145475	223753.0	Mm.222685	NM_145475	ENSMUSG00000035891	Cerk	AI848610|D330016D08Rik|mKIAA1646	ceramide kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-84667713-1	chr18	84667613	84667813	+	547.0	f1_c57bl6.idr	3' UTR (NM_001289531, exon 11 of 11)	3' UTR (NM_001289531, exon 11 of 11)	14346.0	NM_001289531	66054.0	Mm.29646	NM_023149	ENSMUSG00000024644	Cndp2	0610010E05Rik|C76600|Cn2|Dip-2|Pep-1|Pep1	CNDP dipeptidase 2 (metallopeptidase M20 family)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-79286271-4	chr3	79286196	79286396	+	821.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59080.0	NM_001142953	100233207.0	Mm.373801	NM_001142953	ENSMUSG00000091685	Gm17359	-	predicted gene, 17359	protein-coding	2.874388061171	1.40807023994596	2.3176979321338	2.8237514026971	2.77074963526147	1.41617693765097	2.45918489527796	2.38199813874196	-0.275708156638691	0.77181894142448	0.998431161219273
Merged-chr10-19593635-2	chr10	19593535	19593735	+	783.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_010511, intron 1 of 6)	intron (NM_010511, intron 1 of 6)	1686.0	NM_010511	15979.0	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	-2.05752322593321	-2.15521190974092	-2.16307242109104	-2.16952927915413	-2.17938029103484	-2.15350850414045	-2.16129297361887	-2.16837350464794	-0.683654500252594	0.846597994014493	1
Merged-chr1-39590390-4	chr1	39590291	39590491	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13044.0	NM_001033135	67702.0	Mm.28614	NM_001033135	ENSMUSG00000048234	Rnf149	1600023E10Rik|AV037261|C76763|Gm15832|Greul4	ring finger protein 149	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76697211-2	chr15	76697111	76697311	+	579.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_182805, exon 2 of 11)	exon (NM_182805, exon 2 of 11)	485.0	NM_182805	76282.0	Mm.30130	NM_182805	ENSMUSG00000022546	Gpt	1300007J06Rik|2310022B03Rik|ALT|ALT1|Gpt-1|Gpt1	glutamic pyruvic transaminase, soluble	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-45675981-4	chr19	45675874	45676074	+	991.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15781.0	NM_013907	30838.0	Mm.254739	NM_013907	ENSMUSG00000040913	Fbxw4	Dac|Fbw4|SHFM3|SHSF3|dactylin|dactylyn	F-box and WD-40 domain protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-3282473-3	chr18	3282375	3282575	+	905.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001110855)	promoter-TSS (NM_001110855)	-728.0	NM_001110855	12916.0	Mm.5244	NM_013498	ENSMUSG00000063889	Crem	ICER|ICERI	cAMP responsive element modulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-58507996-1	chr3	58507896	58508096	+	577.0	f1_balb.idr	Intergenic	Intergenic	-17825.0	NM_001005509	229317.0	Mm.21617	NM_001005509	ENSMUSG00000027810	Eif2a	D030048D22|D3Ertd194e	eukaryotic translation initiation factor 2A	protein-coding	0.624216530480523	0.672129849111855	1.78342846526107	0.644802889203352	0.821910143199156	0.924367795474205	1.71112702299552	1.54836157844378	0.887970061609538	0.558765071069125	0.960321604678676
Merged-chr1-167269471-3	chr1	167269354	167269554	+	907.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030724, intron 1 of 6)	intron (NM_030724, intron 1 of 6)	15673.0	NM_030724	80914.0	Mm.280895	NM_030724	ENSMUSG00000026558	Uck2	AA407809|AI481316|AU018180|AU020720|TSA903|UK|UMK|Umpk	uridine-cytidine kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-77406486-1	chr11	77406386	77406586	+	895.0	f0_balb.idr	intron (NM_177710, intron 4 of 14)	ORR1D2|LTR|ERVL-MaLR	-57427.0	NM_139129	216961.0	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-13470469-4	chr10	13470377	13470577	+	924.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195065, intron 1 of 12)	intron (NM_001195065, intron 1 of 12)	3919.0	NM_001195065	215789.0	Mm.283359	NM_001033257	ENSMUSG00000062866	Phactr2	AV158170|BC012871	phosphatase and actin regulator 2	protein-coding	1.04826931659897	0.737889588656928	0.720512486993302	1.72634735500543	1.44052414062976	0.998821869663656	0.724389418145317	2.1848779442538	1.10725139376901	0.442074379317996	0.911405219295188
Merged-chr2-144595903-2	chr2	144595803	144596003	+	619.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001033297)	TTS (NM_001033297)	1838.0	NM_001033297	228715.0	Mm.27391	NM_001033297	ENSMUSG00000074754	Smim26	Gm561	small integral membrane protein 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-65764607-2	chr17	65764507	65764707	+	640.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133685, intron 1 of 6)	Lx5|LINE|L1	8145.0	NM_133685	106572.0	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171825659-3	chr1	171825589	171825789	+	829.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14008.0	NM_001252472	12523.0	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	1.7197980632719	2.59284522273217	1.87272286708754	1.33352846995632	3.25791246823886	2.61294192647311	3.23105382717426	2.65593675389509	2.15256023110484	0.011282101226446	0.118323995205332
Merged-chr1-118514666-2	chr1	118514546	118514746	+	629.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359347, intron 20 of 40)	intron (NM_001359347, intron 20 of 40)	-55381.0	NR_027901	68204.0	Mm.443536	NR_027901	ENSMUSG00000107722	2900060B14Rik	-	RIKEN cDNA 2900060B14 gene	ncRNA	2.04645523429366	3.05880490368302	2.6459677199151	2.57115953969858	2.06348778344946	3.25511996357698	2.88481520763411	3.05545140700282	0.497160227519301	0.505292798344957	0.940939014262092
Merged-chr2-19629043-4	chr2	19628946	19629146	+	943.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28851.0	NR_033642	100041244.0	Mm.407223	NR_033642		Gm3230	-	predicted gene 3230	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-53393168-2	chr19	53393068	53393268	+	643.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2534.0	NM_172429	76479.0	Mm.313687	NM_172429	ENSMUSG00000025024	Smndc1	-	survival motor neuron domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4194155-2	chr19	4194055	4194255	+	684.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_031868, intron 4 of 6)	B1_Mur4|SINE|Alu	1981.0	NM_031868	19045.0	Mm.1970	NM_031868	ENSMUSG00000040385	Ppp1ca	Ppp1c|dism2	protein phosphatase 1, catalytic subunit, alpha isoform	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-74793038-2	chr1	74792938	74793138	+	576.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009518, intron 1 of 3)	intron (NM_009518, intron 1 of 3)	1019.0	NM_009518	22409.0	Mm.5130	NM_009518	ENSMUSG00000026167	Wnt10a	-	wingless-type MMTV integration site family, member 10A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-79321837-4	chr2	79321739	79321939	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010576, intron 24 of 27)	intron (NM_010576, intron 24 of 27)	66413.0	NM_010576	16401.0	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-80944709-2	chr17	80944609	80944809	+	928.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026516)	promoter-TSS (NM_026516)	77.0	NM_026516	68027.0	Mm.357108	NM_026516	ENSMUSG00000024245	Tmem178	2810417M05Rik|Tmem178a	transmembrane protein 178	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-136344502-1	chr1	136344402	136344602	+	806.5	f0_balb.idr	intron (NM_001347109, intron 1 of 17)	intron (NM_001347109, intron 1 of 17)	1602.0	NM_001347109	67886.0	Mm.144143	NM_001081360	ENSMUSG00000041570	Camsap2	1600013L13Rik|4930541M15Rik|Camsap1l1|mKIAA1078	calmodulin regulated spectrin-associated protein family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94039007-3	chr10	94038902	94039102	+	821.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053072, intron 1 of 20)	intron (NM_053072, intron 1 of 20)	3001.0	NM_053072	13998.0	Mm.269596	NM_053072	ENSMUSG00000020021	Fgd6	AA123052|Etohd4|ZFYVE24	FYVE, RhoGEF and PH domain containing 6	protein-coding	2.8712837097329	2.59487839828015	3.31799715875055	2.30276574569822	2.96583169887132	2.11131834189959	2.22798869269025	2.95808776489983	-0.372143229835767	0.621053627945313	0.979416591494199
Merged-chr17-94749996-4	chr17	94749898	94750098	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_024720)	promoter-TSS (NR_024720)	21.0	NM_001357136	76781.0	Mm.139146	NM_176917	ENSMUSG00000055660	Mettl4	2410198H06Rik|A730091E08Rik|AV296509|HsT661	methyltransferase like 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-152427871-4	chr3	152427751	152427951	+	889.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001287139, exon 4 of 14)	exon (NM_001287139, exon 4 of 14)	31167.0	NM_001287139	108946.0	Mm.379292	NM_198416	ENSMUSG00000039068	Zzz3	3110065C23Rik|6430567E01Rik|AA408566|AI481057|AW556059|R75514	zinc finger, ZZ domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-16086756-4	chr19	16086647	16086847	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14|LTR|ERV1	-46084.0	NM_008139	14682.0	Mm.439701	NM_008139	ENSMUSG00000024639	Gnaq	1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI	guanine nucleotide binding protein, alpha q polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-87742277-4	chr6	87742164	87742364	+	866.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159697, intron 2 of 7)	MTD|LTR|ERVL-MaLR	11395.0	NM_001159697	58229.0	Mm.333229	NM_021418	ENSMUSG00000068263	Efcc1	Ccdc48	EF hand and coiled-coil domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-56631524-4	chr13	56631441	56631641	+	974.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155548, intron 10 of 16)	intron (NR_155548, intron 10 of 16)	21955.0	NR_155548	21810.0	Mm.14455	NM_009369	ENSMUSG00000035493	Tgfbi	68kDa|AI181842|AI747162|Beta-ig|big-h3	transforming growth factor, beta induced	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-11005413-3	chr8	11005281	11005481	+	652.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081212, exon 1 of 2)	exon (NM_001081212, exon 1 of 2)	-2469.0	NR_046017	619321.0	Mm.403007	NR_046017	ENSMUSG00000096938	9530052E02Rik	-	RIKEN cDNA 9530052E02 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-105592086-4	chr11	105591965	105592165	+	983.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181071, intron 1 of 25)	intron (NM_181071, intron 1 of 25)	2079.0	NM_181071	77097.0	Mm.22501	NM_175492	ENSMUSG00000053580	Tanc2	3526402J09Rik|5730590C14Rik	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-77464311-3	chr1	77464216	77464416	+	936.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007936, intron 3 of 17)	intron (NM_007936, intron 3 of 17)	32452.0	NR_105770	102465180.0		NR_105770	ENSMUSG00000099141	Mir6352	Gm27481|mmu-mir-6352	microRNA 6352	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191266768-4	chr1	191266666	191266866	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42312.0	NR_151547	100504360.0	Mm.16927	NM_001033188		D730003I15Rik	AU020850	RIKEN cDNA D730003I15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-37338852-3	chr13	37338747	37338947	+	664.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6498.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-125330272-3	chr5	125330166	125330366	+	754.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205083, intron 1 of 10)	intron (NM_001205083, intron 1 of 10)	10828.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-144836126-2	chr5	144835996	144836196	+	548.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081362, exon 56 of 71)	exon (NM_001081362, exon 56 of 71)	60720.0	NR_106006	102465629.0		NR_106006	ENSMUSG00000098822	Mir7039	Gm27824|mmu-mir-7039	microRNA 7039	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-120493287-4	chr9	120493148	120493348	+	983.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026892, intron 1 of 3)	intron (NM_026892, intron 1 of 3)	642.0	NM_026892	68969.0	Mm.28753	NM_026892	ENSMUSG00000006941	Eif1b	1500010M16Rik|3110001N14Rik|Gc20	eukaryotic translation initiation factor 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-51593940-2	chr12	51593840	51594040	+	765.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001198835, intron 3 of 11)	CpG-3156	599.0	NM_001198835	12810.0	Mm.21325	NM_007728	ENSMUSG00000020953	Coch	AW122937|Coch-5B2|D12H14S564E	cochlin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-69318417-1	chr3	69318317	69318517	+	642.0	f1_c57bl6.idr	intron (NM_178726, intron 1 of 3)	intron (NM_178726, intron 1 of 3)	1499.0	NM_178726	242083.0	Mm.40577	NM_178726	ENSMUSG00000027784	Ppm1l	3222401G13|5930404J21Rik|AI481720|AW045850|PP2C|PP2Cepsilon|Pp2ce|Ppp2ce|mKIAA4175	protein phosphatase 1 (formerly 2C)-like	protein-coding	1.66777902141328	0.724492516420708	1.16908649006696	1.29599391253167	1.06917393342338	2.51451865995313	0.70831638697954	0.689947212866124	0.789418207234478	0.57384645377458	0.964527909969019
Merged-chr1-144317200-2	chr1	144317100	144317300	+	823.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-68096.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152555578-1	chr1	152555478	152555678	+	652.0	f0_balb.idr	intron (NM_016846, intron 5 of 17)	intron (NM_016846, intron 5 of 17)	69639.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-90241748-2	chr3	90241648	90241848	+	612.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030080, intron 4 of 9)	intron (NM_030080, intron 4 of 9)	802.0	NM_001307935	78284.0	Mm.299952	NM_030080	ENSMUSG00000027938	Creb3l4	1700012K17Rik|5330432F22Rik|AIBZIP|AV040530|AV258827|CREB4|JAL|TISP40|acre1	cAMP responsive element binding protein 3-like 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106657093-4	chr11	106656994	106657194	+	960.9249880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001032378, intron 13 of 13)	intron (NM_001032378, intron 13 of 13)	-44164.0	NM_198292	21763.0	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80961677-2	chr10	80961577	80961777	+	576.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038655, intron 2 of 3)	intron (NM_001038655, intron 2 of 3)	31586.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-39636271-4	chr18	39636178	39636378	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-137219.0	NM_011033	18459.0	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131968817-2	chr1	131968717	131968917	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177628, intron 1 of 4)	intron (NM_001177628, intron 1 of 4)	-1792.0	NM_145977	212980.0	Mm.200307	NM_145977	ENSMUSG00000026435	Slc45a3	2210413P12Rik|AU023994|AU043764|IPCA-6|PRST|Pcanap6	solute carrier family 45, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31195351-4	chr14	31195235	31195435	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347583, intron 3 of 13)	intron (NM_001347583, intron 3 of 13)	11491.0	NM_022656	64652.0	Mm.298728	NM_022656	ENSMUSG00000021910	Nisch	1200007D05Rik|3202002H23Rik|AW494485|I-1|edsn	nischarin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-71658173-2	chr5	71658073	71658273	+	660.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010251, exon 1 of 9)	5' UTR (NM_010251, exon 1 of 9)	135.0	NM_001359045	14397.0	Mm.248731	NM_010251	ENSMUSG00000029211	Gabra4	Gabra-4	gamma-aminobutyric acid (GABA) A receptor, subunit alpha 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-96768076-2	chr11	96767976	96768176	+	586.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001163389, exon 8 of 8)	3' UTR (NM_001163389, exon 8 of 8)	9479.0	NM_028965	74479.0	Mm.270781	NM_028965	ENSMUSG00000020876	Snx11	4933439F10Rik|A930041K09Rik|AI117694	sorting nexin 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-130878995-4	chr3	130878896	130879096	+	945.537476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-148598.0	NM_001005859	68436.0	Mm.140568	NM_026724	ENSMUSG00000062006	Rpl34	1100001I22Rik	ribosomal protein L34	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-43655962-2	chr19	43655862	43656062	+	854.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13955.0	NR_152201	100043245.0	Mm.402688	NR_152201		Gm4311	-	predicted gene 4311	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-122971818-2	chr4	122971718	122971918	+	710.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10630.0	NM_029662	76574.0	Mm.331842	NM_029662	ENSMUSG00000028655	Mfsd2a	1700018O18Rik|Mfsd2|NLS1	major facilitator superfamily domain containing 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-70841985-4	chr9	70841884	70842084	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001324473, intron 1 of 8)	intron (NM_001324473, intron 1 of 8)	92824.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-172209601-2	chr1	172209500	172209700	+	573.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_009813)	TTS (NM_009813)	-2796.0	NM_011063	18611.0	Mm.544	NM_011063	ENSMUSG00000013698	Pea15a	Mat1|PEA-15|Pea15|Pkcs15	phosphoprotein enriched in astrocytes 15A	protein-coding	-0.499940950918087	-0.487518524828365	0.0891561271406926	-0.494726023626598	-0.499164980458282	-0.486601867615524	0.100277611126392	-0.494177430718284	0.0410194320726077	0.98816738256539	1
Merged-chr14-56888117-4	chr14	56888017	56888217	+	956.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177627, intron 2 of 2)	intron (NM_177627, intron 2 of 2)	1274.0	NM_001360643	76007.0	Mm.31417	NM_029498	ENSMUSG00000021945	Zmym2	5830413P05Rik|FIM|MYM|RAMP|SCLL|Zfp198|Znf198	zinc finger, MYM-type 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-92105953-2	chr16	92105853	92106053	+	564.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_080456, intron 2 of 2)	intron (NM_080456, intron 2 of 2)	47617.0	NM_080456	121022.0	Mm.217354	NM_080456	ENSMUSG00000039680	Mrps6	AW046321	mitochondrial ribosomal protein S6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-33847045-2	chr1	33846945	33847145	+	587.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MMERVK10D3_I-int|LTR|ERVK	-8131.0	NM_001161816	433287.0	Mm.383632	NM_001161816		Gm15455	AA692849	predicted gene 15455	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-136990021-2	chr5	136989921	136990121	+	546.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011962, intron 8 of 18)	intron (NM_011962, intron 8 of 18)	-1412.0	NR_030483	735283.0		NR_030483	ENSMUSG00000076240	Mir702	Mirn702|mir-702|mmu-mir-702	microRNA 702	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117395014-2	chr10	117394914	117395114	+	616.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18041.0	NM_001310609	432508.0	Mm.478881	NM_001013391	ENSMUSG00000055531	Cpsf6	4733401N12Rik|AI256641|CFIM|CFIM68|HPBRII-4|HPBRII-7	cleavage and polyadenylation specific factor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-74668385-4	chr7	74668295	74668495	+	894.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-113615.0	NM_001038643	108116.0	Mm.425467	NM_023908	ENSMUSG00000025790	Slco3a1	5830414C08Rik|Anr1|MJAM|OATP-D|R75096|Slc21a11	solute carrier organic anion transporter family, member 3a1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-20744464-1	chr11	20744364	20744564	+	563.0	f1_c57bl6.idr	Intergenic	MER20|DNA|hAT-Charlie	-2908.0	NM_181411	216549.0	Mm.356580	NM_181411	ENSMUSG00000049659	Aftph	-	aftiphilin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-103682536-2	chr2	103682417	103682617	+	663.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_178890, intron 2 of 16)	intron (NM_178890, intron 2 of 16)	78753.0	NM_153126	98956.0	Mm.288005	NM_153126	ENSMUSG00000027185	Nat10	AI429152	N-acetyltransferase 10	protein-coding	-0.493704461970091	-0.856012208689772	-0.861665239843445	-0.863959728756569	-0.867195858719446	-0.356270977638719	-0.861008654254567	-0.863559148558191	0.555099020488173	0.856610390725557	1
Merged-chr11-73186277-4	chr11	73186188	73186388	+	771.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357891, intron 10 of 11)	intron (NM_001357891, intron 10 of 11)	9205.0	NM_029564	76281.0	Mm.371656	NM_029564	ENSMUSG00000040158	Tax1bp3	1300011C24Rik|TIP-1	Tax1 (human T cell leukemia virus type I) binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-73711002-4	chr6	73710911	73711111	+	920.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	-239990.0	NR_108032	73408.0	Mm.233629	NR_108032	ENSMUSG00000107408	1700065L07Rik	-	RIKEN cDNA 1700065L07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-130761147-4	chr3	130760991	130761191	+	867.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30693.0	NM_001005859	68436.0	Mm.140568	NM_026724	ENSMUSG00000062006	Rpl34	1100001I22Rik	ribosomal protein L34	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-16541954-4	chr5	16541840	16542040	+	998.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11555.0	NM_001289460	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-77825099-2	chr11	77824999	77825199	+	665.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011586, intron 13 of 39)	intron (NM_011586, intron 13 of 39)	23801.0	NM_001291215	360013.0	Mm.341248	NM_011586	ENSMUSG00000000631	Myo18a	MAJN|MyoPDZ|MysPDZ|SP-R210	myosin XVIIIA	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-40709326-2	chr12	40709226	40709426	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 15 of 52)	intron (NM_172803, intron 15 of 52)	263273.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-24685750-4	chr5	24685646	24685846	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016736)	promoter-TSS (NM_016736)	-69.0	NM_016736	53312.0	Mm.5856	NM_016736	ENSMUSG00000028954	Nub1	4931404D21Rik|6330412F12Rik|BS4|NY-REN-18	negative regulator of ubiquitin-like proteins 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46828922-3	chr8	46828822	46829022	+	956.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008391, intron 6 of 8)	intron (NM_008391, intron 6 of 8)	89177.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53227926-4	chr4	53227794	53227994	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18302.0	NR_040665	78180.0	Mm.243847	NR_040665	ENSMUSG00000086947	4930522O17Rik	-	RIKEN cDNA 4930522O17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-122233788-3	chr7	122233666	122233866	+	837.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	14270.0	NM_027363	70261.0	Mm.96997	NM_027363	ENSMUSG00000030865	Chp2	2010110P09Rik|Cbhp2	calcineurin-like EF hand protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-40573402-2	chr12	40573302	40573502	+	552.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	127349.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-25483462-4	chr14	25483369	25483569	+	899.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	24284.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-74470983-4	chr5	74470896	74471096	+	805.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114660, intron 3 of 8)	L1M2|LINE|L1	60746.0	NM_178672	212986.0	Mm.134147	NM_178672	ENSMUSG00000062110	Scfd2	E430013M20Rik|STXBP1L1	Sec1 family domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56770928-2	chr17	56770828	56771028	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_144858)	TTS (NM_144858)	652.0	NM_001195673	100504446.0	Mm.46157	NM_001195673	ENSMUSG00000090273	Prr22	Gm546	proline rich 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-6005899-3	chr6	6005803	6006003	+	891.0888669999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010063, intron 14 of 16)	CpG	-28510.0	NR_040255	72249.0	Mm.443268	NR_040255	ENSMUSG00000085416	1700019G24Rik	-	RIKEN cDNA 1700019G24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-74068500-4	chr5	74068466	74068666	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177561)	promoter-TSS (NM_177561)	-155.0	NM_177561	69727.0	Mm.48795	NM_177561	ENSMUSG00000054814	Usp46	1190009E20Rik|2410018I08Rik|AI451644	ubiquitin specific peptidase 46	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-31851911-2	chr17	31851811	31852011	+	732.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010831, intron 3 of 13)	intron (NM_010831, intron 3 of 13)	3893.0	NM_010831	17691.0	Mm.290941	NM_010831	ENSMUSG00000024042	Sik1	Hrt-20|Msk|Sik|Sik-1|Snf1lk	salt inducible kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-51108930-2	chr13	51108830	51109030	+	682.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001283029, intron 1 of 5)	Tigger7|DNA|TcMar-Tigger	7383.0	NM_001283029	20729.0	Mm.188432	NM_011462	ENSMUSG00000021395	Spin1	Spin	spindlin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-53346192-4	chr15	53346108	53346308	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010162)	promoter-TSS (NM_010162)	-25.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-65523576-4	chr3	65523480	65523680	+	812.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4867.0	NM_178892	99929.0	Mm.246398	NM_178892	ENSMUSG00000034640	Tiparp	ARTD14|AW558171|PARP7	TCDD-inducible poly(ADP-ribose) polymerase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-31118852-3	chr17	31118694	31118894	+	934.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009593)	TTS (NM_009593)	10817.0	NM_011575	21786.0	Mm.4641	NM_011575	ENSMUSG00000024029	Tff3	ITF|mITF	trefoil factor 3, intestinal	protein-coding	2.23403990889191	1.23913446163854	2.67668474233779	1.18765612071576	1.95981912291124	1.91225137220453	2.45097174378973	2.0622983629452	0.236578712041679	0.82441665019863	0.998431161219273
Merged-chr3-146158546-4	chr3	146158459	146158659	+	984.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005846, intron 1 of 13)	B4|SINE|B4	8385.0	NM_001005846	68279.0	Mm.116862	NM_026656	ENSMUSG00000011008	Mcoln2	3300002C04Rik|AI549968|C86638|TRPML2	mucolipin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-148546910-2	chr5	148546810	148547010	+	687.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359199, intron 3 of 6)	intron (NM_001359199, intron 3 of 6)	4763.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-129007626-2	chr5	129007522	129007722	+	671.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_152615, intron 1 of 11)	intron (NR_152615, intron 1 of 11)	950.0	NR_152615	13852.0	Mm.260716	NM_007941	ENSMUSG00000029428	Stx2	AW538950|Epim|G1-536-1|Syn-2|repro34	syntaxin 2	protein-coding	1.01688508547507	1.44390808942181	1.38519331433491	1.7964217410911	1.27031322137545	0.738551858856276	0.725088449511777	0.713400376276581	-2.42265072113735	0.101450041046899	0.495198369601582
Merged-chr6-148946485-4	chr6	148946374	148946574	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019643)	promoter-TSS (NM_019643)	-4.0	NM_001361398	56306.0	Mm.18637	NM_019643	ENSMUSG00000039985	Fam60a	Ppcs1|Pptcs1|Sinhcaf|Tera	family with sequence similarity 60, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-84146293-3	chr10	84146209	84146409	+	636.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-45612.0	NR_152790	102637349.0	Mm.402869	NR_152790	ENSMUSG00000111049	Gm34184	-	predicted gene, 34184	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-79388091-1	chr2	79387991	79388191	+	597.0	f1_balb.idr	intron (NM_001048176, intron 2 of 12)	intron (NM_001048176, intron 2 of 12)	40897.0	NM_001048176	228094.0	Mm.440704	NM_001033295	ENSMUSG00000075256	Cerkl	Gm1958|Rp26	ceramide kinase-like	protein-coding	1.1914943145665	1.93681648339555	1.26887938293189	1.56542326368395	1.49924980776374	1.67961059813268	1.46425586780301	2.33347726967786	0.869436498979981	0.430119784122154	0.904095509792853
Merged-chr1-89555566-4	chr1	89555469	89555669	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037136, intron 1 of 16)	intron (NM_001037136, intron 1 of 16)	100758.0	NM_001037136	347722.0	Mm.291135	NM_178119	ENSMUSG00000055013	Agap1	Centg2|Ggap1|R75364|mKIAA1099	ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-95336519-2	chr8	95336419	95336619	+	576.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133954, intron 2 of 6)	intron (NM_133954, intron 2 of 6)	4235.0	NM_133954	101985.0	Mm.29069	NM_133954	ENSMUSG00000031792	Usb1	AA960436	U6 snRNA biogenesis 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-79934065-2	chr7	79933965	79934165	+	572.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027420, intron 1 of 5)	intron (NM_027420, intron 1 of 5)	1199.0	NM_027420	70420.0	Mm.34266	NM_027420	ENSMUSG00000039043	Arpin	2610034B18Rik	actin-related protein 2/3 complex inhibitor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-121109753-2	chr6	121109680	121109880	+	826.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001270475, intron 1 of 31)	CpG	21242.0	NM_001270475	194401.0	Mm.122399	NM_153396	ENSMUSG00000051586	Mical3	C130040D16Rik|Mical-3|mKIAA1364	microtubule associated monooxygenase, calponin and LIM domain containing 3	protein-coding	2.49131600369481	2.15557235022861	2.23809579525606	2.71261061016142	3.00120748745468	1.49182854369909	2.51180577184717	2.6376042671056	0.239945479042905	0.778454125296357	0.998431161219273
Merged-chr2-32204237-2	chr2	32204137	32204337	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001159634, exon 12 of 32)	exon (NM_001159634, exon 12 of 32)	-32446.0	NM_145145	99011.0	Mm.31192	NM_145145	ENSMUSG00000039254	Pomt1	AI505244	protein-O-mannosyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-34679683-2	chr18	34679583	34679783	+	766.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27947.0	NM_178347	52563.0	Mm.196638	NM_178347	ENSMUSG00000024370	Cdc23	6030435O18|D18Ertd243e	CDC23 cell division cycle 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-112629548-4	chr12	112629441	112629641	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007421, intron 2 of 12)	intron (NM_007421, intron 2 of 12)	9494.0	NM_007421	11565.0	Mm.3440	NM_007421	ENSMUSG00000011148	Adssl1	AI528595|Adss|Adss1	adenylosuccinate synthetase like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-136129547-4	chr4	136129446	136129646	+	924.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-14276.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	3.61020563844587	3.96761357993975	2.70874141913274	3.66550105415933	3.75868311987059	4.58992870005348	3.64492808505539	3.3613375900193	0.515475913376539	0.346308410262303	0.8471218399554
Merged-chr15-58416837-2	chr15	58416737	58416937	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145959, intron 1 of 23)	intron (NM_145959, intron 1 of 23)	1369.0	NM_145959	210998.0	Mm.3224	NM_145959	ENSMUSG00000037119	Fam91a1	AV220772|BC033609|D15Ertd621e|SKIN|mKIAA0493	family with sequence similarity 91, member A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67210145-4	chr10	67210073	67210273	+	799.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207221, intron 3 of 25)	MTC|LTR|ERVL-MaLR	24423.0	NM_001242396	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-83663070-1	chr8	83662970	83663170	+	663.0	f1_c57bl6.idr	exon (NM_018771, exon 5 of 7)	exon (NM_018771, exon 5 of 7)	-3574.0	NM_013641	19216.0	Mm.213000	NM_013641	ENSMUSG00000019464	Ptger1	EP1|Ptgerep1	prostaglandin E receptor 1 (subtype EP1)	protein-coding	-1.84354474832578	-1.81325489144778	-1.53416061964661	-1.82993901100912	-1.8414184563789	-1.81126990231468	-1.82034119297928	-1.82859217979378	-1.52252619601533	0.665276690233728	1
Merged-chr1-95655623-2	chr1	95655523	95655723	+	545.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159745, intron 2 of 3)	intron (NM_001159745, intron 2 of 3)	11971.0	NM_009183	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-22000715-2	chr11	22000615	22000815	+	972.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011023, intron 2 of 4)	intron (NM_011023, intron 2 of 4)	936.0	NM_011023	18423.0	Mm.129663	NM_011023	ENSMUSG00000005917	Otx1	A730044F23Rik|jv	orthodenticle homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-114086290-4	chr7	114086208	114086408	+	891.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025846, intron 1 of 5)	intron (NM_025846, intron 1 of 5)	31473.0	NM_025846	66922.0	Mm.276572	NM_025846	ENSMUSG00000055723	Rras2	2610016H24Rik|C86394|TC21	related RAS viral (r-ras) oncogene 2	protein-coding	2.8638231355079	3.11186852799404	2.81434756851797	2.37134472254863	2.88692129517551	3.22352570745881	2.83591314895547	2.3833211575444	0.0931591647197302	0.89238292216477	0.998431161219273
Merged-chr2-160356386-4	chr2	160356297	160356497	+	871.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	10668.0	NM_010658	16658.0	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	1.03280462779228	0.65647757169765	1.13399501407994	0.638327502284156	1.14806213642742	0.658765817033185	1.26632231587886	1.41482325835389	1.26529412078655	0.411091857772367	0.894256659801134
Merged-chr13-66905271-4	chr13	66905079	66905279	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177750)	promoter-TSS (NM_001177750)	171.0	NM_026219	67530.0	Mm.379136	NM_026219	ENSMUSG00000021520	Uqcrb	2210415M14Rik|QP-C|QPC|UQBC|UQBP|UQPC	ubiquinol-cytochrome c reductase binding protein	protein-coding	2.67847765086736	2.22817255776685	3.16295216510308	1.67848063987563	2.86595838068135	2.82734129712932	3.57040441223156	1.6873330833661	0.64008063596704	0.445479442544101	0.913093059349143
Merged-chr2-127079281-4	chr2	127079171	127079371	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026678, intron 1 of 7)	RLTR28|LTR|ERVL	8614.0	NM_026678	109778.0	Mm.22028	NM_026678	ENSMUSG00000001999	Blvra	0610006A11Rik|2500001N03Rik|Blvr	biliverdin reductase A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-13466596-4	chr9	13466498	13466698	+	899.2291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35237.0	NR_028271	18689.0	Mm.41972	NM_008835	ENSMUSG00000031802	Phxr4	Sp5	per-hexamer repeat gene 4	ncRNA	0.0309931086722129	0.620405172943552	-0.381668368531974	-0.385914782484214	-0.391962563490476	-0.374978499490952	-0.380459389434572	-0.385170984773987	-3.83978867392874	0.125433724554188	1
Merged-chr2-181487764-5	chr2	181487718	181487918	+	754.799988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5388.0	NM_183181	241850.0	Mm.87455	NM_183181	ENSMUSG00000055882	Abhd16b	1700095H12	abhydrolase domain containing 16B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-18813146-3	chr16	18813049	18813249	+	844.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011672, intron 1 of 11)	intron (NM_011672, intron 1 of 11)	855.0	NM_011672	22230.0	Mm.237594	NM_011672	ENSMUSG00000005262	Ufd1	Ufd1l	ubiquitin recognition factor in ER-associated degradation 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-66085428-2	chr5	66085328	66085528	+	840.099976	f1_balb.idr|f1_c57bl6.idr	intron (NM_139065, intron 2 of 6)	intron (NM_139065, intron 2 of 6)	12751.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21367008-2	chr9	21366908	21367108	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010561)	promoter-TSS (NM_010561)	-863.0	NM_001042708	16201.0	Mm.440026	NM_010561	ENSMUSG00000032178	Ilf3	MBII-26|MPHOSPH4|NF90|NFAR	interleukin enhancer binding factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-5099605-2	chr18	5099505	5099705	+	713.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_153153, exon 26 of 35)	exon (NM_153153, exon 26 of 35)	53016.0	NM_001347449	225115.0	Mm.136791	NM_153153	ENSMUSG00000024236	Svil	AU024053|B430302E16Rik	supervillin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-95826119-4	chr15	95825996	95826196	+	967.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155276, intron 1 of 1)	intron (NR_155276, intron 1 of 1)	3976.0	NR_155277	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-149322515-2	chr4	149322415	149322615	+	590.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12124.0	NR_131918	74310.0	Mm.440455	NR_131918	ENSMUSG00000085286	Ube4bos3	1700121F15Rik	ubiquitination factor E4B, opposite strand 3	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134877035-3	chr6	134876926	134877126	+	859.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167694, intron 3 of 3)	intron (NM_001167694, intron 3 of 3)	10759.0	NR_074084	14760.0	Mm.4787	NM_008157	ENSMUSG00000032641	Gpr19	-	G protein-coupled receptor 19	protein-coding	2.54019040256994	3.03950631037878	1.82719507917645	3.18276222068635	2.92746771441917	2.10748543839509	1.33585753869646	1.56497010883148	-1.18568414872297	0.204812264606221	0.692253703623242
Merged-chr17-45619567-2	chr17	45619467	45619667	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17465.0	NM_001177469	653016.0	Mm.45676	NM_001177468	ENSMUSG00000079471	Mymx	EG653016|Esgp|Gm7325|minion|myomerger	myomixer, myoblast fusion factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-22286538-3	chr11	22286412	22286612	+	962.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252515, intron 1 of 24)	intron (NM_001252515, intron 1 of 24)	283.0	NM_153078	216565.0	Mm.491265	NM_153078	ENSMUSG00000042302	Ehbp1	AF424697|Flj21950|NACSIN	EH domain binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135729506-2	chr5	135729406	135729606	+	817.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008898, exon 4 of 16)	exon (NM_008898, exon 4 of 16)	6383.0	NR_106001	102466791.0		NR_106001	ENSMUSG00000099197	Mir7034	Gm27372|mmu-mir-7034	microRNA 7034	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-96618020-3	chr10	96617874	96618074	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007569, intron 1 of 1)	intron (NM_007569, intron 1 of 1)	973.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-69574703-8	chr12	69574585	69574785	+	702.510437	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8343.0	NM_001033236	207965.0	Mm.102487	NM_001033236	ENSMUSG00000049882	Vcpkmt	Gm71|Mettl21d|Mettl221d|VCP-KMT	valosin containing protein lysine (K) methyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-23535878-2	chr13	23535778	23535978	+	835.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_145073)	TTS (NM_145073)	460.0	NM_145073	97908.0	Mm.261657	NM_145073	ENSMUSG00000099517	Hist1h3g	H3.1-221|M32460	histone cluster 1, H3g	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-45580660-2	chr17	45580560	45580760	+	676.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	YREP_Mm|Unknown|Unknown	-7399.0	NM_008302	15516.0	Mm.2180	NM_008302	ENSMUSG00000023944	Hsp90ab1	90kDa|AL022974|C81438|Hsp84|Hsp84-1|Hsp90|Hspcb	heat shock protein 90 alpha (cytosolic), class B member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-33883547-4	chr1	33883464	33883664	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_177235, exon 2 of 7)	5' UTR (NM_177235, exon 2 of 7)	24057.0	NM_177235	320705.0	Mm.336619	NM_177235	ENSMUSG00000042182	Bend6	B230209C24Rik	BEN domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32587913-4	chr2	32587826	32588026	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011373, intron 1 of 4)	intron (NM_011373, intron 1 of 4)	848.0	NM_011373	20448.0	Mm.27446	NM_011373	ENSMUSG00000079442	St6galnac4	SIAT7-D|ST6GalNAcIV|Siat7d	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-131919467-2	chr4	131919367	131919567	+	624.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_102394, intron 1 of 2)	intron (NR_102394, intron 1 of 2)	562.0	NR_102394	545681.0	Mm.2478	NR_102393	ENSMUSG00000085667	Gm12992	-	predicted gene 12992	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-57433475-4	chr9	57433393	57433593	+	891.3833619999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152145, intron 3 of 6)	intron (NR_152145, intron 3 of 6)	6243.0	NM_001357913	66812.0	Mm.250508	NM_176831	ENSMUSG00000063849	Ppcdc	1810057I13Rik|8430432M10Rik	phosphopantothenoylcysteine decarboxylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-114785934-1	chr9	114785834	114786034	+	562.0	f0_balb.idr	Intergenic	RMER5|LTR|ERV1	-3941.0	NM_001252479	102545.0	Mm.35600	NM_133978	ENSMUSG00000032436	Cmtm7	AI481279|Cklfsf7|LNV	CKLF-like MARVEL transmembrane domain containing 7	protein-coding	2.80046419274966	1.67616410427759	1.34029638199786	2.88000676941314	2.58907523019582	1.39283468821868	2.98944214357289	3.2318207267148	0.698413781105833	0.474897511303912	0.927029054433838
Merged-chr10-7390929-4	chr10	7390925	7391125	+	790.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	82452.0	NM_029975	77777.0	Mm.442442	NM_029975	ENSMUSG00000079685	Ulbp1	A430108B07Rik|MULT1	UL16 binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-114773541-4	chr5	114773449	114773649	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019834)	promoter-TSS (NM_019834)	-57.0	NM_001347400	26431.0	Mm.195632	NM_019834	ENSMUSG00000041890	Git2	1500036H07Rik|5830420E16Rik|6430510B20Rik|9630056M03Rik|B230104M05Rik|CAT2|mKIAA0148	G protein-coupled receptor kinase-interactor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-95216646-2	chr4	95216546	95216746	+	565.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MurERV4_19-int|LTR|ERVK	-164424.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-65441845-3	chr3	65441695	65441895	+	909.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER102b|DNA|hAT-Charlie	-49242.0	NM_026155	67437.0	Mm.232728	NM_026155	ENSMUSG00000027828	Ssr3	0610038P07Rik|AL022999|AU022074|AW553833|TRAPG	signal sequence receptor, gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-36936491-2	chr16	36936391	36936591	+	871.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_008225, intron 1 of 13)	intron (NM_008225, intron 1 of 13)	1508.0	NM_008225	15163.0	Mm.4091	NM_008225	ENSMUSG00000022831	Hcls1	AW213261|HS1	hematopoietic cell specific Lyn substrate 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21292779-2	chr9	21292680	21292880	+	579.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	-1571.0	NM_009878	12581.0	Mm.29020	NM_009878	ENSMUSG00000096472	Cdkn2d	INK4d|p19|p19INK4d	cyclin dependent kinase inhibitor 2D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-50589938-4	chr16	50589831	50590031	+	900.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040566)	promoter-TSS (NR_040566)	-572.0	NR_040566	75211.0	Mm.399337	NR_040566		4930542D17Rik	-	RIKEN cDNA 4930542D17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-21348261-2	chr5	21348161	21348361	+	742.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_029195, intron 2 of 18)	intron (NM_029195, intron 2 of 18)	-24412.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81194641-2	chr10	81194541	81194741	+	900.416626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015477)	promoter-TSS (NR_015477)	-50.0	NR_015477	69678.0	Mm.81562	NR_015477		Atcayos	2310050B05Rik	ataxia, cerebellar, Cayman type, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-81345380-3	chr8	81345269	81345469	+	755.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024617, intron 1 of 24)	intron (NM_001024617, intron 1 of 24)	2807.0	NM_001297593	234515.0	Mm.324468	NM_001024617	ENSMUSG00000037940	Inpp4b	E130107I17Rik	inositol polyphosphate-4-phosphatase, type II	protein-coding	1.03615994402528	0.749454467828725	0.356110122458507	0.349432892429444	0.502340726591509	1.25663315152237	0.358010240664753	0.534137701706729	0.313236247291222	0.857558308982298	1
Merged-chr10-79887049-2	chr10	79886949	79887149	+	587.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_015779, exon 3 of 5)	exon (NM_015779, exon 3 of 5)	737.0	NM_015779	50701.0	Mm.262194	NM_015779	ENSMUSG00000020125	Elane	Ela2|F430011M15Rik|NE	elastase, neutrophil expressed	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111447211-3	chr12	111447111	111447311	+	857.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009396, intron 3 of 11)	intron (NM_009396, intron 3 of 11)	4550.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-8996101-4	chr13	8996003	8996203	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027000)	promoter-TSS (NM_027000)	-91.0	NM_027000	69237.0	Mm.41800	NM_027000	ENSMUSG00000021149	Gtpbp4	2610028C09Rik|Crfg|Gtpbp3|NGB|Nog1	GTP binding protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-10292784-4	chr3	10292716	10292916	+	905.2374880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029310, intron 1 of 5)	intron (NM_029310, intron 1 of 5)	8367.0	NM_001357159	75497.0	Mm.47052	NM_029310	ENSMUSG00000027530	Fabp12	1700008G05Rik	fatty acid binding protein 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-94990918-4	chr11	94990816	94991016	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172261)	promoter-TSS (NM_172261)	-296.0	NM_172261	217124.0	Mm.229087	NM_172261	ENSMUSG00000038976	Ppp1r9b	SPL|Spn	protein phosphatase 1, regulatory subunit 9B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-69209003-4	chr8	69208923	69209123	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001013379)	promoter-TSS (NM_001013379)	-23.0	NM_001013379	234358.0	Mm.334577	NM_001013379	ENSMUSG00000059897	Zfp930	-	zinc finger protein 930	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-3657588-3	chr2	3657477	3657677	+	676.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-55881.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-150621811-4	chr5	150621709	150621909	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362416, intron 6 of 7)	intron (NM_001362416, intron 6 of 7)	-27284.0	NM_133898	100637.0	Mm.279932	NM_133898	ENSMUSG00000041132	N4bp2l1	2410024N18Rik|AI428195|B230342M21Rik	NEDD4 binding protein 2-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-63230960-4	chr11	63230862	63231062	+	936.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER57D|LTR|ERV1	98159.0	NM_001302260	18858.0	Mm.1237	NM_008885	ENSMUSG00000018217	Pmp22	22kDa|Gas-3|HNPP|TRE002|Tr|trembler	peripheral myelin protein 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-127932655-3	chr3	127932554	127932754	+	808.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040552, intron 3 of 4)	intron (NR_040552, intron 3 of 4)	16483.0	NR_040552	329753.0	Mm.119720	NR_040552	ENSMUSG00000104763	9830132P13Rik	9830132P13	RIKEN cDNA 9830132P13 gene	ncRNA	1.74283796325586	2.49675778183609	1.15419873007085	1.35848665405894	1.87125586684638	2.2240065848333	1.90622995852351	1.84665937340468	0.425325197486473	0.688381664513629	0.996533206832645
Merged-chr9-118688551-3	chr9	118688410	118688610	+	738.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 13 of 27)	intron (NM_133721, intron 13 of 27)	-23182.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0.220036651091526	-0.214337493191172	-0.218466278458616	-0.221640189456501	-0.226108236592251	-0.21340446373515	0.222358133503761	0.18708466864808	0.906013661427398	0.710370266288113	1
Merged-chr8-104143702-2	chr8	104143602	104143802	+	758.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009868, exon 12 of 12)	3' UTR (NM_009868, exon 12 of 12)	-26811.0	NM_001141924	65115.0	Mm.41849	NM_001141922	ENSMUSG00000031872	Bean1	Bean	brain expressed, associated with Nedd4, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44519399-2	chr7	44519299	44519499	+	622.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146189, intron 7 of 27)	intron (NM_146189, intron 7 of 27)	5270.0	NM_146189	233199.0	Mm.358888	NM_146189	ENSMUSG00000038670	Mybpc2	-	myosin binding protein C, fast-type	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-72425486-4	chr4	72425393	72425593	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	224249.0	NR_027923	68285.0	Mm.37541	NR_027923		C630043F03Rik	AI851307	RIKEN cDNA C630043F03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124028151-3	chr5	124028080	124028280	+	831.6777950000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177876, intron 1 of 3)	URR1B|DNA|hAT-Charlie	4080.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-14333764-1	chr13	14333664	14333864	+	542.0	f1_balb.idr	intron (NM_001081348, intron 7 of 28)	Lx2|LINE|L1	189462.0	NM_001081348	94253.0	Mm.125298	NM_153130	ENSMUSG00000021301	Hecw1	9330116H24Rik|AV273951|E130207I19Rik|Nedl1	HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-120363443-4	chr14	120363356	120363556	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360376, intron 2 of 8)	intron (NM_001360376, intron 2 of 8)	57004.0	NM_001360376	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-62505543-3	chr10	62505502	62505702	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358965, intron 2 of 3)	intron (NM_001358965, intron 2 of 3)	2155.0	NM_011157	19073.0	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-41831557-3	chr15	41831437	41831637	+	904.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001130164, intron 1 of 5)	intron (NM_001130164, intron 1 of 5)	579.0	NM_001130164	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-32268134-1	chr11	32268034	32268234	+	643.0	f0_balb.idr	promoter-TSS (NR_104306)	promoter-TSS (NR_104306)	-427.0	NM_001284359	17168.0	Mm.263161	NM_181569	ENSMUSG00000020289	Nprl3	Aag|CGTHBA|HS-26|HS-40|Mare|Phg|Prox1|m(alpha)RE	nitrogen permease regulator-like 3	protein-coding	1.73507383423965	2.50938144318561	0.903846429644376	1.11850839099602	1.07351793697496	1.88031585403645	1.15773459769883	1.47864511504541	-0.884387527166294	0.468846019760896	0.924737467231384
Merged-chr10-6712474-4	chr10	6712373	6712573	+	950.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46120.0	NM_001302794	18390.0	Mm.438000	NM_011013	ENSMUSG00000000766	Oprm1	M-OR-1|MOP-R|MOR-1|MOR-1O|Oprm|mor|muOR	opioid receptor, mu 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-28638944-3	chr12	28638835	28639035	+	862.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	-2982.0	NM_011300	20115.0	Mm.279839	NM_011300	ENSMUSG00000061477	Rps7	Mtu|Rps7A|S7	ribosomal protein S7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-40343202-3	chr19	40343105	40343305	+	807.266663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034963, intron 12 of 22)	Tigger16a|DNA|TcMar-Tigger	59105.0	NM_001034964	20411.0	Mm.210815	NM_009166	ENSMUSG00000025006	Sorbs1	2310065E01Rik|9530001P15Rik|CAP|SH3P12|Sh3d5|mKIAA1296	sorbin and SH3 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-140863702-4	chr2	140863591	140863791	+	976.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013802, intron 4 of 18)	intron (NM_001013802, intron 4 of 18)	-192215.0	NM_178382	71436.0	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-115856070-2	chr2	115855974	115856174	+	578.5	f0_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	208545.0	NM_001346044	17536.0	Mm.247566	NM_010825	ENSMUSG00000027210	Meis2	A430109D20Rik|Mrg1|Stra10	Meis homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-21371304-4	chr11	21371195	21371395	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_139297)	promoter-TSS (NM_139297)	-28.0	NM_001290634	216558.0	Mm.28877	NM_139297	ENSMUSG00000001891	Ugp2	UDPGP|UGPase	UDP-glucose pyrophosphorylase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-94581597-2	chr1	94581497	94581697	+	969.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-215845.0	NR_040473	74689.0	Mm.399187	NR_040473	ENSMUSG00000100518	4930440C22Rik	-	RIKEN cDNA 4930440C22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-54669272-2	chr4	54669171	54669371	+	684.5	f0_balb.idr|f1_balb.idr	Intergenic	L2c|LINE|L2	-278674.0	NM_172867	242466.0	Mm.102904	NM_172867	ENSMUSG00000060206	Zfp462	6030417H05|9430078C22Rik|Gt4-2|Zfpip	zinc finger protein 462	protein-coding	-0.13516917387841	-0.114944818936795	-0.121507254238095	-0.126611771220937	0.819763592562873	-0.113473673508336	0.635661584993435	-0.125717358581435	4.14217351523566	0.0763005808781898	1
Merged-chr6-113017674-3	chr6	113017565	113017765	+	767.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28637.0	NM_001355266	14911.0	Mm.781	NM_008188	ENSMUSG00000030264	Thumpd3	AW556087|Gt(ROSA)26asSor|Gtrosa26as	THUMP domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88646647-2	chr3	88646547	88646747	+	740.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001198913, intron 21 of 21)	intron (NM_001198913, intron 21 of 21)	6495.0	NM_181817	242093.0	Mm.269130	NM_181817	ENSMUSG00000049741	Rxfp4	GPCR142|Gpr100|Rln3r2|SALPR	relaxin family peptide receptor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80828636-4	chr7	80828529	80828729	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25298.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	4.11437632109478	3.53050192053932	2.83873777511012	3.88378009629951	3.33169369357886	3.95626705781579	2.8627262870395	3.95837850185581	-0.119137107947628	0.833610606745117	0.998431161219273
Merged-chr6-53995724-4	chr6	53995634	53995834	+	966.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110484, intron 1 of 3)	MLT1H2|LTR|ERVL-MaLR	17043.0	NR_110484	320178.0	Mm.320413	NR_110484	ENSMUSG00000108060	4921529L05Rik	4930590G02Rik	RIKEN cDNA 4921529L05 gene	ncRNA	4.23899864004015	4.06907854534948	5.02162922527908	3.74665174131598	4.17941130624203	4.24145078818308	4.7292637864114	3.9136626516681	-0.078472115921032	0.860517368753616	0.998431161219273
Merged-chr9-48707641-3	chr9	48707539	48707739	+	940.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033324, intron 4 of 6)	intron (NM_001033324, intron 4 of 6)	-102516.0	NM_001311062	18113.0	Mm.8362	NM_010924	ENSMUSG00000032271	Nnmt	-	nicotinamide N-methyltransferase	protein-coding	-1.20406370813143	-1.56956373024278	-1.57884638916872	-1.58647144159385	-1.598104728449	-1.56755213932999	-1.57674499865798	-1.58510656085539	-1.70745470802464	0.626337835847419	1
Merged-chr13-107021866-5	chr13	107021684	107021884	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015471)	promoter-TSS (NR_015471)	330.0	NM_001145779	16563.0	Mm.355686	NM_008442	ENSMUSG00000021693	Kif2a	C530030B14Rik|Kif2|Kns2|M-kinesin	kinesin family member 2A	protein-coding	3.47745357056308	2.48143466376796	3.06622513058999	2.17370386024826	2.35877393361982	3.00455973992194	3.00133300662104	2.34143752009771	-0.375110642019333	0.613212164971137	0.976924404519883
Merged-chr4-129249463-2	chr4	129249363	129249563	+	634.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285867, intron 1 of 6)	intron (NM_001285867, intron 1 of 6)	-1020.0	NM_001033189	97130.0	Mm.331907	NM_001033189	ENSMUSG00000050390	C77080	mKIAA1522	expressed sequence C77080	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85501585-1	chr12	85501485	85501685	+	541.0	f1_c57bl6.idr	Intergenic	Intergenic	27695.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-143470964-4	chr5	143470847	143471047	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144915, intron 2 of 14)	intron (NM_144915, intron 2 of 14)	6454.0	NM_144915	231871.0	Mm.469963	NM_144915	ENSMUSG00000039206	Daglb	E330036I19Rik	diacylglycerol lipase, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-53635023-3	chr9	53634943	53635143	+	872.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027807, exon 8 of 19)	exon (NM_027807, exon 8 of 19)	-24693.0	NM_144784	110446.0	Mm.293233	NM_144784	ENSMUSG00000032047	Acat1	6330585C21Rik|Acat	acetyl-Coenzyme A acetyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-69223423-4	chr10	69223378	69223578	+	964.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252638, intron 2 of 11)	intron (NM_001252638, intron 2 of 11)	10284.0	NM_001252638	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-56016566-2	chr16	56016466	56016666	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001024622, exon 5 of 5)	3' UTR (NM_001024622, exon 5 of 5)	13151.0	NM_001356449	76302.0	Mm.310642	NM_001024622	ENSMUSG00000071533	Pcnp	1110018D06Rik|AI647035	PEST proteolytic signal containing nuclear protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5295545-4	chr19	5295447	5295647	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030109)	promoter-TSS (NM_030109)	-92.0	NM_030109	319322.0	Mm.196532	NM_030109	ENSMUSG00000024853	Sf3b2	145kDa|2610311M13Rik|2810441F20Rik|B230398H18Rik|SAP145|SF3b1|SF3b145|SF3b150	splicing factor 3b, subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-30540312-2	chr16	30540251	30540451	+	551.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357415, intron 7 of 11)	intron (NM_001357415, intron 7 of 11)	10227.0	NM_172614	224090.0	Mm.241459	NM_172614	ENSMUSG00000022537	Tmem44	1700007N03Rik|9330161C17Rik|B230220N21	transmembrane protein 44	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-22930680-4	chr19	22930593	22930793	+	917.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001035239, intron 21 of 24)	intron (NM_001035239, intron 21 of 24)	180088.0	NR_029591	387200.0		NR_029591	ENSMUSG00000065507	Mir204	Mirn204|mir-204|mmu-mir-204	microRNA 204	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-89765925-2	chr13	89765825	89766025	+	685.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23413.0	NM_001134475	13003.0	Mm.158700	NM_019389	ENSMUSG00000021614	Vcan	5430420N07Rik|9430051N09|Cspg2|DPEAAE|NG2|PG-M|PG-M(V0)|PG-M(V1)|hdf	versican	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-114348513-3	chr6	114348435	114348635	+	680.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49401.0	NM_001317125	15465.0	Mm.333327	NM_008285	ENSMUSG00000053004	Hrh1	Bphs|H1R|HH1R|Hir	histamine receptor H1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-25584871-2	chr2	25584771	25584971	+	619.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001024616, exon 13 of 15)	exon (NM_001024616, exon 13 of 15)	-4772.0	NM_001005424	381353.0	Mm.379511	NM_001005424	ENSMUSG00000029419	Gm996	Ajm1	predicted gene 996	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-45924790-4	chr1	45924725	45924925	+	931.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016917, intron 1 of 7)	intron (NM_016917, intron 1 of 7)	769.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83632061-4	chr6	83631965	83632165	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24051.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19225157-3	chr7	19225053	19225253	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_175668)	TTS (NM_175668)	-3236.0	NM_207525	403187.0	Mm.239583	NM_207525	ENSMUSG00000052214	Opa3	D630048P19Rik|Gm1425|Gm472	optic atrophy 3	protein-coding	3.38425534657506	3.84860895458051	3.14129436438397	3.84508667229289	5.27063549514074	5.6651663485155	5.20078980304514	5.63999986538838	2.33719457177308	7.16721522805196e-10	1.20549880803038e-07
Merged-chr17-34895222-4	chr17	34895029	34895229	+	946.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198886, intron 1 of 1)	CpG	570.0	NM_198886	193736.0	Mm.161119	NM_198886	ENSMUSG00000049823	Zbtb12	BC020447|Bat-9|Bat9|G10|NG35	zinc finger and BTB domain containing 12	protein-coding	1.25489016052681	0.97357946764717	1.35233196660075	1.70097769468349	1.62206114746329	0.977368174548159	1.87608284987043	1.99026662372184	1.10903983012694	0.370063780680468	0.863700645402606
Merged-chr15-59553918-2	chr15	59553818	59554018	+	563.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026746, intron 4 of 6)	intron (NM_026746, intron 4 of 6)	-94736.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5397626-4	chr17	5397520	5397720	+	941.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21147.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89715069-3	chr3	89714971	89715171	+	932.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357958)	promoter-TSS (NM_001357958)	49.0	NM_001038587	56417.0	Mm.316628	NM_019655	ENSMUSG00000027951	Adar	AV242451|Adar1|Adar1p110|Adar1p150|DRADA|mZaADAR	adenosine deaminase, RNA-specific	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-59316182-4	chr1	59316068	59316268	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356389, intron 10 of 13)	intron (NM_001356389, intron 10 of 13)	59262.0	NM_001356389	271697.0	Mm.297713	NM_001033373	ENSMUSG00000026023	Cdk15	Als2cr7|Pftk2	cyclin-dependent kinase 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-64768957-1	chr9	64768857	64769057	+	584.0	f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-31201.0	NM_017382	53869.0	Mm.1387	NM_017382	ENSMUSG00000004771	Rab11a	-	RAB11A, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-94321652-4	chr11	94321561	94321761	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361574, intron 1 of 9)	CpG	302.0	NR_155069	67684.0	Mm.30927	NM_026313	ENSMUSG00000020863	Luc7l3	3300001P08Rik|Luc7a	LUC7-like 3 (S. cerevisiae)	protein-coding	2.94330955407948	2.06451782027886	3.7211479828888	2.42029920585298	2.17616520462674	2.45234957584268	3.1370924340192	2.29196532111552	-0.709281464892804	0.365698006891445	0.861036332257394
Merged-chr13-43784496-2	chr13	43784396	43784596	+	686.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289915)	promoter-TSS (NM_001289915)	-616.0	NM_009856	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-105158740-2	chr1	105158640	105158840	+	629.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-197267.0	NR_151539	100504568.0	Mm.321153	NR_151538	ENSMUSG00000097482	Gm17634	-	predicted gene, 17634	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-34523330-2	chr5	34523230	34523430	+	558.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-2454.0	NM_011893	24055.0	Mm.5012	NM_011893	ENSMUSG00000054520	Sh3bp2	3BP2	SH3-domain binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-88732482-3	chr10	88732373	88732573	+	768.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025859, intron 1 of 5)	intron (NM_025859, intron 1 of 5)	1059.0	NM_025859	104303.0	Mm.291247	NM_025859	ENSMUSG00000060904	Arl1	2310008D22Rik|AU019749	ADP-ribosylation factor-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-97581007-4	chr7	97580918	97581118	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081267, intron 1 of 15)	intron (NM_001081267, intron 1 of 15)	1122.0	NM_001081267	233532.0	Mm.43977	NM_001081267	ENSMUSG00000035623	Rsf1	4832420A03Rik|C030033M12Rik|Gm164|Hbxap|XAP8|p325	remodeling and spacing factor 1	protein-coding	4.02759725810038	4.25886099335013	4.34118370634311	4.4540698874554	3.4439852854833	3.68545069620131	3.56109374236529	4.03418110933168	-0.800804641988155	0.0722329837455382	0.404977261205125
Merged-chr1-70856098-4	chr1	70856002	70856202	+	992.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177164, intron 3 of 3)	intron (NM_177164, intron 3 of 3)	130387.0	NM_177164	320460.0	Mm.360649	NM_177164	ENSMUSG00000045648	Vwc2l	A830006F12Rik|Brl	von Willebrand factor C domain-containing protein 2-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-7997381-4	chr14	7997281	7997481	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3199.0	NM_007870	13421.0	Mm.272258	NM_007870	ENSMUSG00000025279	Dnase1l3	DNasegamma|Dhp2|Lsd	deoxyribonuclease 1-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95755649-2	chr3	95755549	95755749	+	579.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163618)	promoter-TSS (NM_001163618)	-672.0	NR_151588	71807.0	Mm.271754	NM_027931	ENSMUSG00000028107	Tars2	2610024N01Rik|AI429208|Tarsl1|thrRS	threonyl-tRNA synthetase 2, mitochondrial (putative)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-111067209-1	chr9	111067109	111067309	+	543.0	f1_balb.idr	Intergenic	RMER20C_Mm|LTR|ERVK	-9691.0	NM_001302376	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-109059241-4	chr9	109059129	109059329	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001012236)	promoter-TSS (NM_001012236)	22.0	NM_001012236	22040.0	Mm.439964	NM_011637	ENSMUSG00000049734	Trex1	AU041952	three prime repair exonuclease 1	protein-coding	-0.374580744633659	-0.355556779960887	0.770097045676207	-0.366510631386007	-0.373371935839892	-0.354179554264008	0.0312756714853517	-0.365668894802806	-2.11656087341121	0.40413812012771	1
Merged-chr1-154788283-3	chr1	154788192	154788392	+	672.277771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62372.0	NM_009782	12290.0	Mm.267517	NM_009782	ENSMUSG00000004110	Cacna1e	A430040I15|BII|Cach6|Cacnl1a6|Cav2.3|Cchra1|alpha1E	calcium channel, voltage-dependent, R type, alpha 1E subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-148831456-4	chr6	148831281	148831481	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081113)	promoter-TSS (NM_001081113)	86.0	NM_001081113	320727.0	Mm.260105	NM_001081113	ENSMUSG00000040029	Ipo8	6230418K12Rik|Abcc10|C130009K11Rik|MRP7|OM-1|Om1|Ranbp8	importin 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-194978622-2	chr1	194978522	194978722	+	746.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1663.0	NR_033564	320400.0	Mm.417608	NR_033564	ENSMUSG00000097325	Gm16897	C030002c11rik	predicted gene, 16897	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-27257070-2	chr7	27256970	27257170	+	920.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133770, intron 14 of 14)	ZP3AR|Satellite|Satellite	-1691.0	NM_010950	18223.0	Mm.458153	NM_010950	ENSMUSG00000063160	Numbl	nbl	numb-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-144718015-4	chr3	144717912	144718112	+	868.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001282037, intron 1 of 10)	intron (NM_001282037, intron 1 of 10)	2323.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-71348505-4	chr10	71348395	71348595	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027184, intron 1 of 5)	CpG	732.0	NM_027184	69718.0	Mm.245867	NM_027184	ENSMUSG00000060733	Ipmk	2410017C19Rik|AA408208|Impk	inositol polyphosphate multikinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83349453-4	chr6	83349346	83349546	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175277)	promoter-TSS (NM_175277)	-38.0	NM_175277	78653.0	Mm.391470	NM_175277	ENSMUSG00000045160	Bola3	1810056O20Rik	bolA-like 3 (E. coli)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126479561-2	chr8	126479461	126479661	+	577.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4496.0	NM_001159907	212728.0	Mm.482479	NM_001159907	ENSMUSG00000090290	Tarbp1	Gm17296|Gm179	TAR RNA binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80032261-2	chr7	80032161	80032361	+	802.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_175433, intron 1 of 4)	intron (NM_175433, intron 1 of 4)	6033.0	NM_175433	209225.0	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	0.660537864744743	1.05161504483946	1.00542302838976	0.519287352305459	1.11356233438712	0.537106090180867	0.528165208641038	1.28131169555392	0.441874856582386	0.788140275448269	1
Merged-chr8-3476200-2	chr8	3476100	3476300	+	565.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_029598, exon 2 of 9)	exon (NM_029598, exon 2 of 9)	5338.0	NM_029598	76406.0	Mm.74996	NM_029598	ENSMUSG00000040340	Tex45	1700019B03Rik	testis expressed 45	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-102942243-4	chr2	102942122	102942322	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40557.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167069895-2	chr2	167069795	167069995	+	703.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	YREP_Mm|Unknown|Unknown	4602.0	NR_028540	100217443.0		NR_028540		Snord12	MBII-99	small nucleolar RNA, C/D box 12	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47851073-2	chr17	47850973	47851173	+	960.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16382.0	NM_001109973	17240.0	Mm.329100	NM_010783	ENSMUSG00000032717	Mdfi	I-mf|I-mfa	MyoD family inhibitor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70510313-2	chr11	70510213	70510413	+	700.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_029360, exon 3 of 5)	exon (NM_029360, exon 3 of 5)	4303.0	NM_001013607	327956.0	Mm.244514	NM_001013607	ENSMUSG00000020830	Vmo1	Gm741	vitelline membrane outer layer 1 homolog (chicken)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-133418329-4	chr1	133418217	133418417	+	897.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011439, intron 1 of 13)	intron (NM_011439, intron 1 of 13)	5895.0	NM_011439	20668.0	Mm.8575	NM_011439	ENSMUSG00000070643	Sox13	AA407916|AW259412|AW540933|Sox-13	SRY (sex determining region Y)-box 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-89959155-3	chr16	89959043	89959243	+	827.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145886, intron 1 of 27)	intron (NM_001145886, intron 1 of 27)	1684.0	NM_009384	21844.0	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-23702891-4	chr13	23702787	23702987	+	991.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010424, exon 6 of 6)	3' UTR (NM_010424, exon 6 of 6)	-4429.0	NM_178208	319155.0	Mm.261662	NM_178208	ENSMUSG00000060678	Hist1h4c	-	histone cluster 1, H4c	protein-coding	2.4710054271143	1.47490910633247	1.93668653954854	2.71641450323214	2.49285413491005	3.72644006334352	3.09415674555051	2.51134276586606	1.5567744058375	0.0565933652542626	0.351331767671943
Merged-chr1-43934768-3	chr1	43934649	43934849	+	899.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009418, intron 1 of 29)	intron (NM_009418, intron 1 of 29)	755.0	NM_009418	22019.0	Mm.401675	NM_009418	ENSMUSG00000041763	Tpp2	TPP-2|TppII	tripeptidyl peptidase II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4114535-2	chr19	4114435	4114635	+	799.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_075078)	TTS (NR_075078)	7040.0	NM_001276284	11632.0	Mm.10433	NM_016666	ENSMUSG00000024847	Aip	AA408703|AW476050|Ara9|D19Bwg1412e|Fkbp16|Xap2	aryl-hydrocarbon receptor-interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-99245562-5	chr5	99245447	99245647	+	808.286682	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181318, intron 1 of 13)	intron (NM_181318, intron 1 of 13)	7380.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-5604366-4	chr13	5604242	5604442	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	253750.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90538731-4	chr2	90538610	90538810	+	836.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	41937.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	3.08263422182976	1.79434156473432	3.52433326041538	4.0354999978416	3.87328126904521	3.96387383591947	3.17794614690737	3.66051823739461	0.537445454080157	0.402588194521975	0.88802300978208
Merged-chr14-16245480-1	chr14	16245380	16245580	+	1000.0	f1_balb.idr	intron (NM_001359882, intron 1 of 3)	intron (NM_001359882, intron 1 of 3)	-2149.0	NM_001359883	71147.0	Mm.197960	NM_027695	ENSMUSG00000021786	Oxsm	4933425A18Rik|C80494	3-oxoacyl-ACP synthase, mitochondrial	protein-coding	1.64304226089798	2.40967033624165	1.77042756456115	1.8553005303458	1.65537350485927	1.47376171739237	2.15443940026776	1.86454590238908	-0.401723771658098	0.685263226252322	0.996533206832645
Merged-chr9-77716351-1	chr9	77716251	77716451	+	590.0	f0_balb.idr	Intergenic	Intergenic	-38184.0	NR_151778	14629.0	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	1.08720967074125	0.598622361231679	0.0496595731480615	0.0440781768695881	0.34147878179984	0.0584467860404672	0.05124806201329	0.0450560480025136	-2.70941130404915	0.213226139139227	1
Merged-chr18-84786539-2	chr18	84786439	84786639	+	788.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42472.0	NR_155706	102641800.0		NR_155706		Gm38576	-	predicted gene, 38576	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-8798589-4	chr19	8798495	8798695	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026329)	promoter-TSS (NM_026329)	-38.0	NM_026329	67710.0	Mm.22117	NM_026329	ENSMUSG00000071662	Polr2g	2410046K11Rik|A230108L04Rik|C76415|RBP7|Rpo2-7l	polymerase (RNA) II (DNA directed) polypeptide G	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-12738557-4	chr18	12738507	12738707	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2748.0	NM_181731	71132.0	Mm.179740	NM_027687	ENSMUSG00000024430	Cabyr	1700016C01Rik|4933421A18Rik|CBP86|FSP-2	calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3682109-2	chr4	3682009	3682209	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 1 of 12)	intron (NM_001111096, intron 1 of 12)	3988.0	NM_010747	17096.0	Mm.317331	NM_010747	ENSMUSG00000042228	Lyn	AA407514|Hck-2|p53Lyn|p56Lyn	LYN proto-oncogene, Src family tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-59075736-4	chr19	59075636	59075836	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_175172, exon 1 of 15)	5' UTR (NM_175172, exon 1 of 15)	333.0	NM_175172	71653.0	Mm.37338	NM_175172	ENSMUSG00000041362	Shtn1	4930506M07Rik|Shootin1|mKIAA1598	shootin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-82570871-4	chr11	82570779	82570979	+	987.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62474.0	NR_033582	791422.0	Mm.341562	NR_033582	ENSMUSG00000069796	Gm11426	-	predicted gene 11426	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-120572620-3	chr6	120572522	120572722	+	688.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045733, intron 3 of 3)	intron (NR_045733, intron 3 of 3)	17826.0	NR_045733	73505.0	Mm.416867	NR_045733		1700072O05Rik	-	RIKEN cDNA 1700072O05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-71458520-2	chr6	71458420	71458620	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F2|LTR|ERVL-MaLR	-17883.0	NM_024288	68477.0	Mm.28474	NM_024288	ENSMUSG00000002222	Rmnd5a	1110007A06Rik|AJ237586|AW125795|Gid2|MTA.D02.090	required for meiotic nuclear division 5 homolog A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-8682204-4	chr12	8682103	8682303	+	854.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030723, intron 1 of 20)	MTC|LTR|ERVL-MaLR	7522.0	NM_030723	80913.0	Mm.341243	NM_030723	ENSMUSG00000020594	Pum2	5730503J23Rik|Pumm2	pumilio RNA-binding family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-32030735-2	chr19	32030635	32030835	+	687.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_018830, intron 10 of 23)	intron (NM_018830, intron 10 of 23)	72405.0	NM_018830	54447.0	Mm.491229	NM_018830	ENSMUSG00000024887	Asah2	AI585898	N-acylsphingosine amidohydrolase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25267508-4	chr7	25267417	25267617	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302811)	promoter-TSS (NM_001302811)	-182.0	NM_001302811	71722.0	Mm.28833	NM_027882	ENSMUSG00000005442	Cic	1200010B10Rik|mKIAA0306	capicua transcriptional repressor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-49818136-1	chr16	49818036	49818236	+	715.0	f0_balb.idr	Intergenic	MER21B|LTR|ERVL	-37518.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115268456-3	chr5	115268350	115268550	+	870.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302449, intron 1 of 16)	intron (NM_001302449, intron 1 of 16)	4445.0	NM_001302448	50849.0	Mm.30051	NM_016698	ENSMUSG00000041740	Rnf10	AA675014|RIE2|mKIAA0262	ring finger protein 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31405906-4	chr14	31405792	31405992	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347585, intron 2 of 7)	intron (NM_001347585, intron 2 of 7)	11785.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-138965211-3	chr1	138965105	138965305	+	957.694458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166501, intron 1 of 21)	intron (NM_001166501, intron 1 of 21)	1496.0	NM_001166501	329260.0	Mm.337604	NM_181347	ENSMUSG00000056268	Dennd1b	4632404N19Rik|4930467M19Rik|6820401H01Rik|F730008N07Rik	DENN/MADD domain containing 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-43031135-1	chr17	43031035	43031235	+	672.0	f1_balb.idr	intron (NM_178589, intron 1 of 5)	intron (NM_178589, intron 1 of 5)	14580.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	1.62693196282091	2.12812201452471	2.18537542924599	2.12455292735184	2.47618102256178	1.60378464059369	2.68278348282323	1.8715803010958	0.526213044796239	0.569918581263126	0.962718661854691
Merged-chr2-128780447-3	chr2	128780350	128780550	+	869.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 13 of 18)	intron (NM_008587, intron 13 of 18)	-37853.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-39948537-2	chr11	39948437	39948637	+	853.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	-558312.0	NR_126439	75315.0	Mm.461295	NR_126439		4930553C11Rik	-	RIKEN cDNA 4930553C11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-109606328-2	chr8	109606228	109606428	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_020046, exon 2 of 9)	exon (NM_020046, exon 2 of 9)	2345.0	NM_020046	56749.0	Mm.23894	NM_020046	ENSMUSG00000031730	Dhodh	2810417D19Rik|AI834883	dihydroorotate dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-59439608-2	chr14	59439508	59439708	+	579.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001320720, intron 1 of 13)	intron (NM_001320720, intron 1 of 13)	1272.0	NM_001320725	107303348.0		NM_001320725		Gm45935	Setdb2-phf11c	predicted gene, 45935	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-24111417-5	chr10	24111333	24111533	+	741.266663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1899.0	NM_001010831	503558.0	Mm.300923	NM_001010831	ENSMUSG00000037424	Taar9	Gm231|taR-9	trace amine-associated receptor 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-40224623-2	chr12	40224523	40224723	+	809.166687	f1_balb.idr|f1_c57bl6.idr	intron (NR_045157, intron 1 of 2)	intron (NR_045157, intron 1 of 2)	1259.0	NR_045157	629820.0	Mm.435540	NR_045157	ENSMUSG00000035983	Gm7008	EG629820	predicted gene 7008	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-170344901-2	chr2	170344801	170345001	+	778.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11460.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-3979579-4	chr15	3979466	3979666	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134099)	promoter-TSS (NM_134099)	7.0	NM_134099	106052.0	Mm.234191	NM_134099	ENSMUSG00000022184	Fbxo4	1700096C12Rik|AI851261|AW494535|Fbx4	F-box protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125098716-2	chr6	125098616	125098816	+	700.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346610, intron 2 of 38)	intron (NM_001346610, intron 2 of 38)	1692.0	NR_106012	102466272.0		NR_106012	ENSMUSG00000098762	Mir7045	Gm27758|mmu-mir-7045	microRNA 7045	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-113653004-2	chr5	113652904	113653104	+	816.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1-int|LTR|ERVL-MaLR	-2614.0	NM_008153	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-82799160-4	chr1	82799067	82799267	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER102a|DNA|hAT-Charlie	-30711.0	NM_025453	66261.0	Mm.46325	NM_025453	ENSMUSG00000026149	Tm4sf20	1810018L02Rik	transmembrane 4 L six family member 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124990744-3	chr6	124990665	124990865	+	571.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	-5955.0	NM_175696	319352.0	Mm.295327	NM_175696	ENSMUSG00000030329	Pianp	AI255183|AU067746|C530028O21Rik|Panp	PILR alpha associated neural protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-56191511-2	chr13	56191411	56191611	+	752.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12626.0	NM_001168615	212937.0	Mm.116697	NM_145976	ENSMUSG00000049625	Tifab	-	TRAF-interacting protein with forkhead-associated domain, family member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-64736874-5	chr9	64736687	64736887	+	999.56665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017382, intron 1 of 4)	intron (NM_017382, intron 1 of 4)	969.0	NM_017382	53869.0	Mm.1387	NM_017382	ENSMUSG00000004771	Rab11a	-	RAB11A, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-104115170-3	chr8	104115071	104115271	+	662.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009868, intron 2 of 11)	MTE2b|LTR|ERVL-MaLR	-9298.0	NR_131138	546096.0	Mm.252264	NR_131138	ENSMUSG00000110053	Gm29682	Gm45664	predicted gene, 29682	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-43879579-4	chr5	43879446	43879646	+	998.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007646, intron 1 of 7)	RSINE1|SINE|B4	10737.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10291956-4	chr19	10291856	10292056	+	925.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198114, intron 1 of 19)	intron (NM_198114, intron 1 of 19)	12921.0	NM_198114	269060.0	Mm.329718	NM_198114	ENSMUSG00000035735	Dagla	Nsddr	diacylglycerol lipase, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55079634-2	chr14	55079534	55079734	+	980.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039198, intron 1 of 9)	intron (NM_001039198, intron 1 of 9)	6543.0	NR_004444	432855.0	Mm.490799	NR_004444		Zfhx2os	Zfhx2as	zinc finger homeobox 2, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-115315021-4	chr10	115314934	115315134	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024454, intron 1 of 6)	intron (NM_024454, intron 1 of 6)	557.0	NM_024454	216344.0	Mm.21936	NM_024454	ENSMUSG00000020132	Rab21	9630024B22	RAB21, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-9970893-2	chr1	9970793	9970993	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_110971, intron 6 of 6)	L1ME1|LINE|L1	-3408.0	NM_001285425	100039596.0	Mm.412928	NM_001285425	ENSMUSG00000099032	Tcf24	Gm10567|Gm2330	transcription factor 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85913305-4	chr12	85913213	85913413	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347395, intron 19 of 32)	RSINE1|SINE|B4	88363.0	NM_001081423	320244.0	Mm.132172	NM_177114	ENSMUSG00000012609	Ttll5	1700048H13Rik|2310009M18Rik|4930556H18Rik|AI428864|D630041K24Rik|R75373|Stamp|mKIAA0998	tubulin tyrosine ligase-like family, member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-83568808-4	chr7	83568688	83568888	+	866.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16143.0	NM_177695	233424.0	Mm.486619	NM_177695	ENSMUSG00000038540	Tmc3	9030203A06	transmembrane channel-like gene family 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-73089781-4	chr9	73089675	73089875	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301230, intron 6 of 6)	intron (NM_001301230, intron 6 of 6)	-12623.0	NM_025890	66991.0	Mm.471745	NM_025890	ENSMUSG00000092622	Khdc3	2410004A20Rik|AI467128|FILIA|OEEP48	KH domain containing 3, subcortical maternal complex member	protein-coding	5.86398802468611	5.90723485352114	5.53229013600834	6.14380609160211	5.60382503464161	6.48276355164404	4.8838902016974	5.87625627802401	-0.0654116602856875	0.832423807600512	0.998431161219273
Merged-chr4-119883060-4	chr4	119882963	119883163	+	802.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010657, intron 1 of 8)	intron (NM_010657, intron 1 of 8)	68385.0	NM_010657	16656.0	Mm.302758	NM_010657	ENSMUSG00000028634	Hivep3	2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3	human immunodeficiency virus type I enhancer binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-155558234-4	chr1	155558124	155558324	+	998.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_028250, exon 1 of 8)	5' UTR (NM_028250, exon 1 of 8)	104.0	NM_028250	72482.0	Mm.288249	NM_026683	ENSMUSG00000033701	Acbd6	0610010G04Rik|2610100E10Rik	acyl-Coenzyme A binding domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-117377964-3	chr5	117377864	117378064	+	872.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_021539, exon 9 of 9)	3' UTR (NM_021539, exon 9 of 9)	11059.0	NM_028128	72151.0	Mm.27997	NM_028128	ENSMUSG00000029363	Rfc5	2610020K06Rik|2610209F07Rik|36.5kDa|36kDa|Recc5	replication factor C (activator 1) 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101850613-2	chr7	101850513	101850713	+	723.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001303239, intron 2 of 5)	intron (NM_001303239, intron 2 of 5)	-5282.0	NM_008035	14276.0	Mm.439666	NM_008035	ENSMUSG00000032725	Folr2	FBP2|FR-P3|FR-beta|Folbp-2|Folbp2	folate receptor 2 (fetal)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-153748522-4	chr1	153748418	153748618	+	990.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011882)	promoter-TSS (NM_011882)	-908.0	NM_011882	24014.0	Mm.259254	NM_011882	ENSMUSG00000066800	Rnasel	E230029I04Rik	ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-60835834-2	chr11	60835734	60835934	+	620.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001172112, intron 1 of 6)	ORR1C1-int|LTR|ERVL-MaLR	5203.0	NM_145428	216820.0	Mm.21475	NM_145428	ENSMUSG00000042569	Dhrs7b	BC003479|C79874|C80074|PexRAP	dehydrogenase/reductase (SDR family) member 7B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71242538-2	chr17	71242438	71242638	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357791, intron 13 of 19)	intron (NM_001357791, intron 13 of 19)	37884.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-95720029-2	chr13	95719922	95720122	+	806.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_027711, intron 11 of 35)	intron (NM_027711, intron 11 of 35)	23102.0	NM_010170	14064.0	Mm.440952	NM_010170	ENSMUSG00000021675	F2rl2	F730031A08|PAR3	coagulation factor II (thrombin) receptor-like 2	protein-coding	2.94654835268615	3.37240664115083	2.84864018483825	2.29281288992868	2.64688744629183	2.86209839272146	2.87104475753594	1.488546961602	-0.651678547891268	0.409002139163212	0.892760642634363
Merged-chr2-168575121-1	chr2	168575021	168575221	+	795.5	f0_balb.idr	intron (NM_001291169, intron 1 of 10)	intron (NM_001291169, intron 1 of 10)	15244.0	NM_001291178	18019.0	Mm.116802	NM_010899	ENSMUSG00000027544	Nfatc2	AI607462|NF-ATc2|NF-ATp|NFAT1|NFAT1-D|Nfatp	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-114118304-2	chr7	114118204	114118404	+	610.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025846)	promoter-TSS (NM_025846)	-523.0	NM_025846	66922.0	Mm.276572	NM_025846	ENSMUSG00000055723	Rras2	2610016H24Rik|C86394|TC21	related RAS viral (r-ras) oncogene 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-51504697-2	chr4	51504597	51504797	+	588.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	288019.0	NM_001162865	74914.0	Mm.159368	NM_001162865	ENSMUSG00000039555	Cylc2	4930488P18Rik	cylicin, basic protein of sperm head cytoskeleton 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88684893-2	chr3	88684793	88684993	+	777.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028814)	promoter-TSS (NM_028814)	-894.0	NM_028814	74200.0	Mm.251800	NM_028814	ENSMUSG00000028060	2810403A07Rik	A430106P18Rik|AI256352|AI451678|Blom7|Khdc4|Kiaa0907	RIKEN cDNA 2810403A07 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-90747193-4	chr16	90747032	90747232	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029844, intron 1 of 2)	intron (NM_029844, intron 1 of 2)	8808.0	NM_029844	77037.0	Mm.22455	NM_029844	ENSMUSG00000039956	Mrap	1110025G12Rik|C21ORF61|Falp|ORF61	melanocortin 2 receptor accessory protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-40861819-1	chr8	40861719	40861919	+	671.0	f0_c57.idr	promoter-TSS (NM_001044740)	promoter-TSS (NM_001044740)	-548.0	NM_007514	11988.0	Mm.4676	NM_007514	ENSMUSG00000031596	Slc7a2	20.5|AI158848|Atrc2|CAT-2|Cat2|Tea	solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-23989566-4	chr18	23989439	23989639	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011755)	promoter-TSS (NM_011755)	-95.0	NM_011755	22694.0	Mm.290596	NM_011755	ENSMUSG00000063281	Zfp35	Zfp-35|Znf271|mszf13|mszf20-1|mszf28|mszf68	zinc finger protein 35	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-146410027-4	chr6	146409922	146410122	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019923, intron 9 of 56)	B3|SINE|B2	92201.0	NM_010586	16439.0	Mm.7800	NM_010586	ENSMUSG00000030287	Itpr2	AI649341|InsP3R-2|InsP3R-5|Ip3r2|Itpr5|insP3R2	inositol 1,4,5-triphosphate receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-59078649-4	chr12	59078552	59078752	+	848.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J1|LTR|ERVL-MaLR	11733.0	NM_008891	18949.0	Mm.22347	NM_008891	ENSMUSG00000020994	Pnn	AU045199|D12Ertd512e	pinin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-130549906-2	chr1	130549806	130550006	+	835.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28B|LTR|ERVL	79700.0	NM_009581	22789.0	Mm.4644	NM_009581	ENSMUSG00000042554	Zp3r	AV264399|SP56	zona pellucida 3 receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-70246099-2	chr10	70245999	70246199	+	558.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025807, intron 1 of 5)	intron (NM_025807, intron 1 of 5)	823.0	NM_025807	66859.0	Mm.19325	NM_025807	ENSMUSG00000037762	Slc16a9	1200003C15Rik|4930425B13Rik|AI552636	solute carrier family 16 (monocarboxylic acid transporters), member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-48801799-2	chr11	48801699	48801899	+	946.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028563)	promoter-TSS (NR_028563)	-234.0	NR_028563	100216534.0		NR_028563	ENSMUSG00000064725	Snord96a	U96	small nucleolar RNA, C/D box 96A	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-27182322-4	chr14	27182234	27182434	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289686, intron 2 of 12)	intron (NM_001289686, intron 2 of 12)	38341.0	NM_001289686	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-33352551-4	chr5	33352448	33352648	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021500, intron 1 of 8)	L1MB7|LINE|L1	16976.0	NM_021500	59003.0	Mm.138617	NM_021500	ENSMUSG00000079562	Maea	1110030D19Rik|EMP|Gid9	macrophage erythroblast attacher	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-48493384-2	chr9	48493284	48493484	+	692.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144948, intron 3 of 4)	intron (NM_144948, intron 3 of 4)	1946.0	NM_001326355	67010.0	Mm.76911	NM_144948	ENSMUSG00000042396	Rbm7	1200007M24Rik|1500011D06Rik|AU041934|AW554393	RNA binding motif protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-84116456-2	chr6	84116356	84116556	+	920.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077694, intron 30 of 54)	intron (NM_001077694, intron 30 of 54)	97070.0	NM_021469	26903.0	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-124602719-2	chr2	124602619	124602819	+	716.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290997, intron 5 of 20)	LTR33|LTR|ERVL	-7577.0	NM_199238	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34107529-1	chr17	34107429	34107629	+	889.0	f1_c57bl6.idr	Intergenic	Intergenic	-12220.0	NR_046183	414076.0	Mm.473092	NR_046183	ENSMUSG00000098197	BC051537	-	cDNA sequence BC051537	ncRNA	0.695360683344031	0.643458414918885	-0.151496035178394	-0.15635279029695	-0.163269832061141	-0.143844039213617	-0.150113252785189	-0.155502094007935	-4.04532625908372	0.0881507300546623	1
Merged-chr14-103486375-2	chr14	103486275	103486475	+	680.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11B|LTR|ERVK	-26966.0	NM_022886	64929.0	Mm.244003	NM_022886	ENSMUSG00000022123	Scel	9230114I02Rik	sciellin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56831208-4	chr17	56831110	56831310	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027787)	promoter-TSS (NM_027787)	-202.0	NM_027787	19725.0	Mm.102	NM_009056	ENSMUSG00000024206	Rfx2	5430432H19Rik	regulatory factor X, 2 (influences HLA class II expression)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-162649421-3	chr1	162649314	162649514	+	837.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010865, exon 3 of 3)	3' UTR (NM_010865, exon 3 of 3)	8805.0	NM_001177581	100038657.0	Mm.416999	NM_001177581	ENSMUSG00000091060	Myocos	7420461P10Rik	myocilin opposite strand	protein-coding	3.46734219027089	2.68968053699109	3.76564697835444	4.39562971264543	4.3039944892585	3.66154815507053	4.3548969964017	4.57707832396316	0.745478052601788	0.146077802846628	0.596296396331935
Merged-chr18-38247416-3	chr18	38247339	38247539	+	984.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015475, intron 1 of 3)	Lx8|LINE|L1	2759.0	NR_015475	73516.0	Mm.48776	NR_015475	ENSMUSG00000097080	1700086O06Rik	-	RIKEN cDNA 1700086O06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-95667677-4	chr1	95667577	95667777	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009183)	promoter-TSS (NM_009183)	-83.0	NM_001159745	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135168846-4	chr5	135168746	135168946	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009745, intron 1 of 5)	CpG	474.0	NM_009745	12054.0	Mm.405834	NM_009745	ENSMUSG00000029681	Bcl7b	-	B cell CLL/lymphoma 7B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-51062973-4	chr14	51062860	51063060	+	897.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5718.0	NM_001011875	497106.0	Mm.379740	NM_001011875	ENSMUSG00000068407	Rnase12	Rai1	ribonuclease, RNase A family, 12 (non-active)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117168835-4	chr11	117168742	117168942	+	987.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-30819.0	NM_001113486	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-90483486-2	chr6	90483386	90483586	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20910.0	NM_023184	66277.0	Mm.38343	NM_023184	ENSMUSG00000030087	Klf15	1810013I09Rik|AV048136|AW494632|CKLF|KKLF	Kruppel-like factor 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-136553406-1	chr6	136553306	136553506	+	559.0	f1_c57bl6.idr	intron (NM_019426, intron 1 of 14)	B3|SINE|B2	34555.0	NM_019426	54343.0	Mm.173271	NM_019426	ENSMUSG00000030213	Atf7ip	2610204M12Rik|AM|Mcaf1	activating transcription factor 7 interacting protein	protein-coding	1.38817749374346	2.81304241812373	1.03406675798602	2.4137153485236	1.56305596754878	1.06937418812385	2.23577583263936	1.47603173293516	-1.13505564823327	0.324488902428593	0.827219640184567
Merged-chr8-47906305-3	chr8	47906198	47906398	+	723.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133791, intron 2 of 22)	intron (NM_133791, intron 2 of 22)	81816.0	NM_029383	75677.0	Mm.390033	NM_029383	ENSMUSG00000038064	Cldn22	2210404A22Rik|5330431C14Rik|9530051B05Rik	claudin 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-55211066-4	chr13	55210967	55211167	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008739, intron 1 of 22)	CpG	1285.0	NM_008739	18193.0	Mm.168965	NM_008739	ENSMUSG00000021488	Nsd1	AI528500|KMT3B	nuclear receptor-binding SET-domain protein 1	protein-coding	4.75730878142678	4.24330356154194	5.00207026531517	4.98209572459331	4.82503930668598	4.27432630165088	4.96145458474397	5.03735027689676	0.0338021745432503	0.92486419962833	0.998431161219273
Merged-chr10-96471725-2	chr10	96471625	96471825	+	605.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-145276.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-46499213-2	chr4	46499113	46499313	+	774.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_053179, intron 3 of 5)	intron (NM_053179, intron 3 of 5)	9884.0	NM_053179	94181.0	Mm.249349	NM_053179	ENSMUSG00000028334	Nans	4632418E04Rik|BB056474|Sas	N-acetylneuraminic acid synthase (sialic acid synthase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-75282856-4	chr10	75282741	75282941	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153406, intron 13 of 15)	intron (NM_153406, intron 13 of 15)	-34036.0	NM_009630	11540.0	Mm.333734	NM_009630	ENSMUSG00000020178	Adora2a	A2AAR|A2aR|AA2AR	adenosine A2a receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-42944744-6	chr9	42944660	42944860	+	975.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175481)	promoter-TSS (NM_175481)	-389.0	NM_175481	110637.0	Mm.370291	NM_175481	ENSMUSG00000032017	Grik4	6330551K01Rik|GluK4|GluRgamma1|KA-1|KA1	glutamate receptor, ionotropic, kainate 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41391844-2	chr19	41391725	41391925	+	852.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-6755.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	-0.371017157805094	-0.358333153049781	-0.362493888846312	-0.365700521114218	-0.370226793942338	0.140668998123901	0.213026427282391	-0.199458346159195	3.61957220697359	0.13880386447596	1
Merged-chr1-134151892-4	chr1	134151792	134151992	+	815.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001284524)	TTS (NM_001284524)	-30512.0	NM_007695	12654.0	Mm.38274	NM_007695	ENSMUSG00000064246	Chil1	AW208766|Brp39|Chi3l1|Gp39	chitinase-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-148917440-2	chr4	148917340	148917540	+	763.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027195, intron 4 of 15)	intron (NM_027195, intron 4 of 15)	34882.0	NR_154553	108168987.0	Mm.393596	NR_154553		Gm13205	AA408865	predicted gene 13205	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-92428329-3	chr16	92428253	92428453	+	917.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081549, intron 1 of 3)	intron (NM_001081549, intron 1 of 3)	-28275.0	NM_019466	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-92741962-2	chr1	92741862	92742062	+	688.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-89683.0	NM_016696	14733.0	Mm.297976	NM_016696	ENSMUSG00000034220	Gpc1	AI462976	glypican 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-45590879-3	chr17	45590827	45591027	+	913.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199113, intron 3 of 13)	intron (NM_001199113, intron 3 of 13)	1466.0	NM_022880	63959.0	Mm.29744	NM_022880	ENSMUSG00000023942	Slc29a1	1200014D21Rik|AA407560|ENT1	solute carrier family 29 (nucleoside transporters), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191397229-4	chr1	191397126	191397326	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144880)	promoter-TSS (NM_144880)	-185.0	NM_144880	226849.0	Mm.205569	NM_144880	ENSMUSG00000026626	Ppp2r5a	PR61alpha	protein phosphatase 2, regulatory subunit B', alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-75595565-5	chr12	75595505	75595705	+	878.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012024, intron 1 of 13)	CpG	595.0	NM_012024	26932.0	Mm.259626	NM_012024	ENSMUSG00000021051	Ppp2r5e	4633401M22Rik|AI449017|B56beta	protein phosphatase 2, regulatory subunit B', epsilon	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24500136-1	chr17	24500036	24500236	+	575.0	f1_balb.idr	intron (NM_001360469, intron 10 of 17)	B1_Mus1|SINE|Alu	11353.0	NM_027937	268932.0	Mm.70989	NM_027937	ENSMUSG00000033597	Caskin1	3300002N10Rik|C130061I24|C630036E02Rik|mKIAA1306	CASK interacting protein 1	protein-coding	0.21476205832222	0.258615066207677	0.24472315864082	0.469508917308863	0.217632876731809	0.534424199785442	1.91156618390344	0.972801707286499	4.07893920683979	0.0226293175426184	0.195234816785476
Merged-chr10-81518700-3	chr10	81518605	81518805	+	745.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010304, intron 1 of 6)	B3|SINE|B2	5520.0	NM_010304	14676.0	Mm.1546	NM_010304	ENSMUSG00000034792	Gna15	G[a]15|Galpha15	guanine nucleotide binding protein, alpha 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-27537442-4	chr7	27537354	27537554	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001317355, intron 10 of 13)	intron (NM_001317355, intron 10 of 13)	14193.0	NM_001033315	233020.0	Mm.429716	NM_001033315	ENSMUSG00000040424	Hipk4	Gm162	homeodomain interacting protein kinase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76239260-4	chr15	76239172	76239372	+	941.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163576, intron 8 of 9)	intron (NM_001163576, intron 8 of 9)	4168.0	NM_001163576	671535.0	Mm.373750	NM_001163575	ENSMUSG00000063268	Parp10	-	poly (ADP-ribose) polymerase family, member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-139303462-4	chr7	139303369	139303569	+	901.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54987.0	NM_001098636	101631.0	Mm.334300	NM_001033206	ENSMUSG00000060260	Pwwp2b	AI594893|D7Ertd517e|D930023J19Rik|Pwwp2	PWWP domain containing 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-32191152-4	chr12	32191055	32191255	+	952.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020272, intron 10 of 10)	intron (NM_020272, intron 10 of 10)	17183.0	NM_001146201	30955.0	Mm.101369	NM_020272	ENSMUSG00000020573	Pik3cg	5830428L06Rik|PI3Kgamma|p110gamma	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding	2.32598257761034	1.61336543212455	1.37019925012144	2.30983617525118	1.60723938317887	2.07957954153054	1.88149205640696	1.12090704535076	-0.726946353929641	0.502188787220093	0.938904176563475
Merged-chr7-97082441-4	chr7	97082340	97082540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162477, intron 1 of 9)	intron (NM_001162477, intron 1 of 9)	689.0	NM_010248	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132882968-2	chr4	132882868	132883068	+	571.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133887, intron 1 of 8)	intron (NM_133887, intron 1 of 8)	1490.0	NM_133887	100226.0	Mm.28237	NM_133887	ENSMUSG00000028879	Stx12	AI850350|AU041521|Stx13	syntaxin 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-3704200-7	chr7	3704165	3704365	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029767, intron 1 of 4)	CpG	224.0	NM_029767	76846.0	Mm.13944	NM_029767	ENSMUSG00000006333	Rps9	3010033P07Rik|AL022771|AL022885	ribosomal protein S9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-43448724-4	chr16	43448633	43448833	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181058, intron 2 of 6)	intron (NM_181058, intron 2 of 6)	-28537.0	NR_046026	626693.0	Mm.447083	NR_046026	ENSMUSG00000085499	Gm15713	-	predicted gene 15713	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-143751412-4	chr6	143751298	143751498	+	774.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-100110.0	NR_045732	73425.0	Mm.417844	NR_045732	ENSMUSG00000086887	1700060C16Rik	-	RIKEN cDNA 1700060C16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-5737330-4	chr11	5737247	5737447	+	808.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361588, intron 1 of 6)	MER44B|DNA|TcMar-Tigger	3829.0	NM_001361590	72046.0	Mm.271657	NM_178623	ENSMUSG00000049680	Urgcp	2010005J08Rik|9130001I21Rik|AW060359|Urg4|mKIAA1507	upregulator of cell proliferation	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-79375747-4	chr8	79375694	79375894	+	872.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008539, intron 1 of 6)	intron (NM_008539, intron 1 of 6)	23674.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-6188015-3	chr11	6187951	6188151	+	970.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173748, intron 2 of 5)	intron (NM_173748, intron 2 of 5)	12400.0	NM_173748	209586.0	Mm.25321	NM_173748	ENSMUSG00000053838	Nudcd3	AI427847|BC024322|mKIAA1068	NudC domain containing 3	protein-coding	-1.26158838883041	-1.23491885943196	-0.932285682414493	-1.253498770181	-0.991415215585255	-1.23270831899588	-1.24281036665307	-1.25199890057848	-0.196493622954895	0.95427149369431	1
Merged-chr1-180390567-4	chr1	180390465	180390665	+	940.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081175, intron 2 of 7)	intron (NM_001081175, intron 2 of 7)	-60016.0	NR_003623	277333.0	Mm.389223	NM_199472		Gm5069	EG277333	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152597089-4	chr1	152596993	152597193	+	971.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346119, intron 2 of 17)	intron (NM_001346119, intron 2 of 17)	28124.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-4294681-3	chr11	4294592	4294792	+	776.577759	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27896.0	NM_001039537	16878.0	Mm.4964	NM_008501	ENSMUSG00000034394	Lif	-	leukemia inhibitory factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-92840011-4	chr8	92839912	92840112	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008610, intron 8 of 12)	intron (NM_008610, intron 8 of 12)	12715.0	NM_008610	17390.0	Mm.29564	NM_008610	ENSMUSG00000031740	Mmp2	Clg4a|GelA|MMP-2	matrix metallopeptidase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-58388096-4	chr13	58387974	58388174	+	869.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-2849.0	NM_027335	70153.0	Mm.296610	NM_027335	ENSMUSG00000021550	2210016F16Rik	-	RIKEN cDNA 2210016F16 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-81746612-4	chr12	81746556	81746756	+	850.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001174107, intron 2 of 10)	L1MB8|LINE|L1	34514.0	NM_177395	338372.0	Mm.35284	NM_177395	ENSMUSG00000042724	Map3k9	E130314H24Rik|Mlk1|Prke1	mitogen-activated protein kinase kinase kinase 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70210873-1	chr8	70210773	70210973	+	922.5	f1_balb.idr	intron (NM_001007570, intron 1 of 7)	intron (NM_001007570, intron 1 of 7)	1408.0	NM_001007570	73095.0	Mm.185413	NM_001007570	ENSMUSG00000002346	Slc25a42	2900084M01Rik	solute carrier family 25, member 42	protein-coding	1.45734530179988	2.23361687033596	1.75268157012501	1.09748137109326	2.40866195479118	1.42572682361186	1.59118356687862	2.73619748724077	1.18054412165395	0.272195718383257	0.77560265100435
Merged-chr7-31150689-1	chr7	31150589	31150789	+	1000.0	f0_balb.idr	intron (NR_153431, intron 1 of 18)	CpG	482.0	NM_027898	52857.0	Mm.27366	NM_027898	ENSMUSG00000001248	Gramd1a	1300003M23Rik|AI415002|AW547240|D7Bwg0611e	GRAM domain containing 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-21166461-3	chr1	21166360	21166560	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52115.0	NM_001290679	75712.0	Mm.304763	NM_029398	ENSMUSG00000025933	Tmem14a	5730496E24Rik|C85783|PTD011	transmembrane protein 14A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-29414778-4	chr17	29414677	29414877	+	905.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MD3|LINE|L1	53863.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-32853652-2	chr16	32853549	32853749	+	850.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_172615, intron 2 of 18)	intron (NM_172615, intron 2 of 18)	14717.0	NM_001200038	100502698.0	Mm.327319	NM_172615	ENSMUSG00000035629	Rubcn	1700021K19Rik|5330403K09|Rubicon|mKIAA0226	RUN domain and cysteine-rich domain containing, Beclin 1-interacting protein	protein-coding	0.931142303120716	0.462445254959526	1.14751079501853	1.10144981606061	0.941925070179131	0.464286617953142	0.456064925899153	0.449022615899213	-1.92941926643497	0.281314986697283	1
Merged-chr10-20725128-4	chr10	20725050	20725250	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013875)	promoter-TSS (NM_013875)	-72.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-45019620-4	chr10	45019518	45019718	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47596.0	NM_011156	19072.0	Mm.10281	NM_011156	ENSMUSG00000019849	Prep	AI047692|AI450383|D10Wsu136e|PEP|Pop	prolyl endopeptidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-47366454-1	chr18	47366354	47366554	+	646.0	f0_balb.idr	intron (NM_001311097, intron 1 of 17)	CpG	2414.0	NM_018744	20358.0	Mm.40909	NM_018744	ENSMUSG00000019647	Sema6a	A730020P05Rik|AI851735|Sema6A-1|Semaq|VIa	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A	protein-coding	-0.672586339776561	-0.328623665261891	-0.666539162418673	-0.668821082493509	-0.672028059580956	-0.662893780121535	-0.352487672613578	-0.378953859649704	0.930791100401926	0.736920557305146	1
Merged-chr1-136796713-2	chr1	136796613	136796813	+	585.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	100502.0	NR_037986	100503474.0	Mm.428276	NR_037986		Platr22	Gm16880	pluripotency associated transcript 22	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-31804659-2	chr2	31804559	31804759	+	571.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001283045)	TTS (NM_001283045)	5921.0	NM_183424	227717.0	Mm.185027	NM_183424	ENSMUSG00000043102	Qrfp	P518	pyroglutamylated RFamide peptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-84120109-3	chr17	84120027	84120227	+	856.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41467.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114817097-2	chr11	114816997	114817197	+	770.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER12|LTR|ERVK	18173.0	NM_181749	217302.0	Mm.269127	NM_181749	ENSMUSG00000034677	Gpr142	PGR2	G protein-coupled receptor 142	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152116134-2	chr1	152116034	152116234	+	591.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25814.0	NM_197990	69399.0	Mm.278031	NM_197990	ENSMUSG00000032666	1700025G04Rik	2610510E02Rik|2900042O04Rik	RIKEN cDNA 1700025G04 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-121305653-4	chr9	121305535	121305735	+	752.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152160, intron 1 of 17)	intron (NR_152160, intron 1 of 17)	8133.0	NR_152160	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-122474289-5	chr14	122474218	122474418	+	687.299988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045046, intron 2 of 4)	CpG	881.0	NR_045046	69248.0	Mm.235369	NR_045046	ENSMUSG00000085555	2610035F20Rik	-	RIKEN cDNA 2610035F20 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-42949243-2	chr4	42949143	42949343	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355438)	promoter-TSS (NM_001355438)	-624.0	NM_001355438	56323.0	Mm.20437	NM_019874	ENSMUSG00000036052	Dnajb5	1110058L06Rik|AI462558|Hsc40|Hsp40-3	DnaJ heat shock protein family (Hsp40) member B5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81427158-3	chr10	81427091	81427291	+	934.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008688)	promoter-TSS (NM_008688)	-18.0	NM_026756	18029.0	Mm.426936	NM_008688	ENSMUSG00000055053	Nfic	1110019L22Rik|1500041O16Rik|AA589446|AI746521|NF1-C	nuclear factor I/C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-8806789-2	chr5	8806689	8806889	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011075, intron 4 of 27)	L2|LINE|L2	-8266.0	NR_152132	330031.0	Mm.389059	NR_152132		Gm5106	A230021K14|EG330031	predicted gene 5106	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-45554601-4	chr17	45554500	45554700	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1100.0	NM_008690	18037.0	Mm.57043	NM_008690	ENSMUSG00000023947	Nfkbie	I-kappa-B-epsilon|IKBE|IkB-E|NF-kappa-BIE|ikB-epsilon	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, epsilon	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-33801065-4	chr3	33800988	33801188	+	854.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290502, intron 2 of 9)	intron (NM_001290502, intron 2 of 9)	905.0	NM_001290500	67120.0	Mm.275710	NM_025978	ENSMUSG00000027677	Ttc14	2700016E08Rik|4930434D01Rik|4931403I22Rik|4933402I15Rik|AI662468|AU014779|AW561908|cI-44|mKIAA1980	tetratricopeptide repeat domain 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-64311421-2	chr15	64311321	64311521	+	806.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 3 of 28)	intron (NM_001276461, intron 3 of 28)	1252.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102282301-4	chr12	102282219	102282419	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177620)	promoter-TSS (NM_177620)	-755.0	NM_177620	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10502763-4	chr19	10502681	10502881	+	806.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_025333, exon 4 of 4)	3' UTR (NM_025333, exon 4 of 4)	-19884.0	NM_133689	67752.0	Mm.25939	NM_133689	ENSMUSG00000035179	Ppp1r32	4930579J09Rik|AU015816|IIIG9|IIIG9L|IIIG9S	protein phosphatase 1, regulatory subunit 32	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-66533473-2	chr6	66533373	66533573	+	961.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1748.0	NM_019499	56150.0	Mm.489653	NM_019499	ENSMUSG00000029910	Mad2l1	AA673185|MAD2	MAD2 mitotic arrest deficient-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-93080723-2	chr7	93080623	93080823	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_021427, exon 1 of 2)	exon (NM_021427, exon 1 of 2)	844.0	NM_021427	58238.0	Mm.113787	NM_021427	ENSMUSG00000051515	Fam181b	A830059I20Rik|AB041569	family with sequence similarity 181, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-21139684-1	chr5	21139584	21139784	+	720.0	f0_balb.idr	Intergenic	Intergenic	-36595.0	NR_153366	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-122135278-3	chr7	122135169	122135369	+	750.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021608, intron 3 of 5)	intron (NM_021608, intron 3 of 5)	2228.0	NM_021608	59288.0	Mm.478285	NM_021608	ENSMUSG00000030868	Dctn5	4930427E12Rik|C78178|b2b315Clo	dynactin 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-57652558-4	chr9	57652449	57652649	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304761, intron 1 of 14)	intron (NM_001304761, intron 1 of 14)	1082.0	NM_001304761	12988.0	Mm.21974	NM_007783	ENSMUSG00000032312	Csk	AW212630|p50CSK	c-src tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-130892468-2	chr4	130892368	130892568	+	961.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20866.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-26347435-4	chr4	26347336	26347536	+	831.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172865)	promoter-TSS (NM_172865)	-784.0	NM_172865	242362.0	Mm.245602	NM_172865	ENSMUSG00000040520	Manea	4932703L02Rik	mannosidase, endo-alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-80174222-2	chr17	80174122	80174322	+	677.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_176963, intron 4 of 6)	MLT1G3|LTR|ERVL-MaLR	33083.0	NM_001195486	225027.0	Mm.292016	NM_146083	ENSMUSG00000024097	Srsf7	35kDa|9430065L19Rik|9G8|NX-96|Sfrs7	serine/arginine-rich splicing factor 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-83903983-2	chr12	83903883	83904083	+	776.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_073564, intron 1 of 12)	intron (NR_073564, intron 1 of 12)	17951.0	NR_073563	18222.0	Mm.4390	NM_010949	ENSMUSG00000021224	Numb	Nb	NUMB endocytic adaptor protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-120629022-4	chr2	120628929	120629129	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19434.0	NM_001290807	66296.0	Mm.221900	NM_025475	ENSMUSG00000027285	Haus2	1700101G24Rik|2410007P03Rik|AU020217|Cep27	HAUS augmin-like complex, subunit 2	protein-coding	5.62567463673603	5.6364246686104	5.44336856818048	5.85062111233112	5.72247676931144	5.4102455682797	6.61082055138298	5.89506251845177	0.374431968670127	0.19196685397537	0.670449732387879
Merged-chr8-14813512-4	chr8	14813421	14813621	+	930.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172910, intron 9 of 15)	intron (NM_172910, intron 9 of 15)	-75015.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	0.733653621427895	1.01731954968123	1.86006786629425	1.61979912086046	1.62298070735638	0.784510052012282	1.33155659813948	0.756098727459838	-0.740825358276057	0.61124924651298	0.975581118259498
Merged-chr7-125588835-2	chr7	125588734	125588934	+	834.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14595.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-75298762-4	chr10	75298653	75298853	+	894.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153406, intron 13 of 15)	intron (NM_153406, intron 13 of 15)	-18124.0	NM_009630	11540.0	Mm.333734	NM_009630	ENSMUSG00000020178	Adora2a	A2AAR|A2aR|AA2AR	adenosine A2a receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-35729704-4	chr2	35729616	35729816	+	992.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001114125, exon 17 of 17)	3' UTR (NM_001114125, exon 17 of 17)	32984.0	NM_001290639	69601.0	Mm.29629	NM_001001602	ENSMUSG00000026883	Dab2ip	2310011D08Rik|AI480459|Aip1|mKIAA1743	disabled 2 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-124618736-12	chr2	124618759	124618959	+	892.119446	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291000, intron 1 of 18)	intron (NM_001291000, intron 1 of 18)	8563.0	NM_172537	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-86278326-2	chr17	86278226	86278426	+	777.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011104, intron 1 of 14)	intron (NM_011104, intron 1 of 14)	8852.0	NR_045435	72104.0	Mm.443401	NR_045435	ENSMUSG00000100738	2010106C02Rik	-	RIKEN cDNA 2010106C02 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-37999129-1	chr18	37999029	37999229	+	1000.0	f1_c57bl6.idr	promoter-TSS (NM_001205336)	promoter-TSS (NM_001205336)	-160.0	NM_001205336	106952.0	Mm.247642	NM_139206	ENSMUSG00000024451	Arap3	Centd3|Drag1|E030006K04Rik|cnt-d3	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3	protein-coding	2.73133166720265	3.48497042011347	3.30203925402115	2.40243278175116	2.75391744881132	2.85640423823534	2.98219068905217	2.67755420259477	-0.417587642419531	0.535073711153582	0.95286627222167
Merged-chr2-94406545-4	chr2	94406434	94406634	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027831)	promoter-TSS (NR_027831)	155.0	NM_183106	74569.0	Mm.248504	NM_183106	ENSMUSG00000027194	Ttc17	9130020K17Rik|D2Bwg1005e	tetratricopeptide repeat domain 17	protein-coding	0.523633385022733	0.704393591183552	3.9265357842825	1.52038026782813	0.536611251267056	0.71587177050971	4.1966492859074	0.614062024141134	0.214600058646383	1	1
Merged-chr2-35326732-2	chr2	35326632	35326832	+	858.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013515, intron 1 of 6)	intron (NM_013515, intron 1 of 6)	10277.0	NM_013515	13830.0	Mm.295284	NM_013515	ENSMUSG00000026880	Stom	Epb7.2	stomatin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41264762-4	chr19	41264634	41264834	+	813.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133352)	promoter-TSS (NM_133352)	-730.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30093838-4	chr2	30093759	30093959	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025428)	promoter-TSS (NM_025428)	-224.0	NM_001037762	66220.0	Mm.22538	NM_025428	ENSMUSG00000015335	Zdhhc12	1190004A01Rik	zinc finger, DHHC domain containing 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94312402-5	chr10	94312253	94312453	+	824.493347	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 1 of 4)	CpG	404.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0.533961419496662	1.03192370715222	0.403035844779296	0.939697921358372	0.389016896525774	0.412226922142603	0.74271067507286	0.946871733572048	-0.616434707505697	0.722593092059971	1
Merged-chr16-8769799-2	chr16	8769699	8769899	+	597.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31457.0	NM_001003918	252870.0	Mm.295330	NM_001003918	ENSMUSG00000022710	Usp7	2210010O09Rik|AA409944|AA617399|AU019296|AW548146|C80752|Hausp	ubiquitin specific peptidase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75566718-4	chr11	75566553	75566753	+	988.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199284, intron 9 of 13)	intron (NM_001199284, intron 9 of 13)	15224.0	NR_039553	100628624.0		NR_039553	ENSMUSG00000093100	Mir3971	mmu-mir-3971|mu-mir-3971	microRNA 3971	ncRNA	2.58982934299219	1.16572728847995	1.95361133392075	1.10843271272839	2.23875308003932	2.71815481875031	2.44380785346037	1.11297437432048	0.878917962984687	0.448622092592885	0.915091442864575
Merged-chr6-115361746-3	chr6	115361599	115361799	+	936.1333619999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001308354)	promoter-TSS (NM_001308354)	555.0	NM_001308352	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133213858-1	chr4	133213758	133213958	+	596.0	f1_c57bl6.idr	Intergenic	Intergenic	-1322.0	NM_008154	14748.0	Mm.4721	NM_008154	ENSMUSG00000049649	Gpr3	Gpcr20|Gpcr21|Gpcr3	G-protein coupled receptor 3	protein-coding	2.02115523899952	1.64786530507861	1.70385203329939	1.09964168175901	1.46758600412361	0.92962035573445	0.913363408608462	1.42000878991184	-1.61686765231855	0.205665410654807	0.693268476410294
Merged-chr11-120377648-2	chr11	120377548	120377748	+	696.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_027980, exon 3 of 10)	exon (NM_027980, exon 3 of 10)	1098.0	NM_027980	71885.0	Mm.274890	NM_027980	ENSMUSG00000025384	Faap100	2310003H01Rik	Fanconi anemia core complex associated protein 100	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-41953809-2	chr10	41953709	41953909	+	638.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001034858, intron 10 of 17)	intron (NM_001034858, intron 10 of 17)	64573.0	NM_001034858	213402.0	Mm.211320	NM_001034858	ENSMUSG00000071324	Armc2	2610018I05Rik	armadillo repeat containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-104442176-4	chr3	104442105	104442305	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	69713.0	NM_001025067	269473.0	Mm.34855	NM_001025067	ENSMUSG00000032913	Lrig2	4632419I10Rik|BB096938|LIG-2	leucine-rich repeats and immunoglobulin-like domains 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-59227261-2	chr7	59227161	59227361	+	921.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1489.0	NM_001033962	22215.0	Mm.9002	NM_011668	ENSMUSG00000025326	Ube3a	4732496B02|5830462N02Rik|A130086L21Rik|Hpve6a	ubiquitin protein ligase E3A	protein-coding	0.349911220080329	-0.160773132171557	-8.56346987858679e-05	-0.168101770157142	0.276634826566186	0.0241312700016207	-0.164005475572798	-0.167546422426135	-0.167794845047159	0.940824628225236	1
Merged-chr8-79375036-4	chr8	79374959	79375159	+	933.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008539, intron 1 of 6)	MIRb|SINE|MIR	24409.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-78757264-1	chr7	78757164	78757364	+	869.0	f1_c57bl6.idr	Intergenic	Intergenic	25825.0	NM_023331	67308.0	Mm.193181	NM_023331	ENSMUSG00000030612	Mrpl46	3110052F15Rik|C15orf4|C80107|LIECG2|P2ECSL	mitochondrial ribosomal protein L46	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-23690133-1	chr19	23690033	23690233	+	582.0	f1_c57bl6.idr	intron (NM_028208, intron 1 of 6)	ORR1A2|LTR|ERVL-MaLR	2733.0	NM_028208	72351.0	Mm.474795	NM_028208	ENSMUSG00000074925	Ptar1	1700084D09Rik|2010013L17Rik|4930428J16Rik|AI449677	protein prenyltransferase alpha subunit repeat containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-55452275-3	chr11	55452176	55452376	+	969.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009720, intron 2 of 3)	intron (NM_009720, intron 2 of 3)	8932.0	NM_009720	11927.0	Mm.217759	NM_009720	ENSMUSG00000018585	Atox1	AI256639|Atx1	antioxidant 1 copper chaperone	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153091628-1	chr2	153091528	153091728	+	871.0	f1_balb.idr	Intergenic	Intergenic	-16840.0	NM_001172117	15162.0	Mm.715	NM_010407	ENSMUSG00000003283	Hck	AI849071|Bmk	hemopoietic cell kinase	protein-coding	0.110340095980817	-0.509901940207023	-0.513601369234831	-0.516450543925484	-0.0455771321618418	-0.509067026774214	-0.5127860642304	-0.515953118616481	-0.529223194744453	0.850754015747488	1
Merged-chr2-25263562-2	chr2	25263462	25263662	+	792.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_175286, exon 1 of 4)	exon (NM_175286, exon 1 of 4)	964.0	NM_175286	97031.0	Mm.308539	NM_175286	ENSMUSG00000048707	Tprn	C430004E15Rik|C87750	taperin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-112249829-4	chr5	112249767	112249967	+	955.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021351, intron 3 of 5)	intron (NM_021351, intron 3 of 5)	2651.0	NM_001312884	12959.0	Mm.40324	NM_021351	ENSMUSG00000066975	Cryba4	-	crystallin, beta A4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-150441782-3	chr5	150441604	150441804	+	758.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172887, intron 46 of 60)	intron (NM_172887, intron 46 of 60)	60515.0	NR_024513	194292.0	Mm.300184	NR_024513		Gm5	Gm1812	predicted gene 5	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97659191-4	chr11	97659085	97659285	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4227.0	NM_139311	246198.0	Mm.23685	NM_139311	ENSMUSG00000038437	Mllt6	AI315037|Af17	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 6	protein-coding	4.93313266542269	5.09499783767381	4.67618863574717	5.41495462915446	5.19289895048823	5.08727672415253	5.12777568605834	5.02372011779007	0.0631267834769833	0.839826934917894	0.998431161219273
Merged-chr6-42583727-3	chr6	42583618	42583818	+	689.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13654.0	NM_203396	403088.0	Mm.354652	NM_203396	ENSMUSG00000018656	Tcaf3	Eapa2|Fam115e	TRPM8 channel-associated factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-53904445-4	chr18	53904335	53904535	+	994.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152809, intron 3 of 12)	Lx8|LINE|L1	42322.0	NM_152809	70425.0	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-99181717-4	chr10	99181620	99181820	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153333, intron 11 of 12)	intron (NR_153333, intron 11 of 12)	73585.0	NM_015737	14426.0	Mm.314	NM_015737	ENSMUSG00000090035	Galnt4	AV011803	polypeptide N-acetylgalactosaminyltransferase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45532142-2	chr7	45532081	45532281	+	849.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_148927, intron 2 of 19)	ID_B1|SINE|B4	5851.0	NM_148927	69217.0	Mm.274158	NM_148927	ENSMUSG00000040428	Plekha4	2410005C22Rik|C88169|Pepp1	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21170937-2	chr9	21170837	21171037	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183408, intron 1 of 14)	B4|SINE|B4	5223.0	NM_183408	18577.0	Mm.191749	NM_019798	ENSMUSG00000032177	Pde4a	D9Ertd60e|Dpde2	phosphodiesterase 4A, cAMP specific	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-32344088-2	chr12	32343988	32344188	+	825.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1A|DNA|hAT-Charlie	-34701.0	NM_001162903	72123.0	Mm.341352	NM_028111	ENSMUSG00000090946	Ccdc71l	2010109K11Rik|AV375874	coiled-coil domain containing 71 like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-133545829-2	chr2	133545729	133545929	+	736.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6330.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-136971175-3	chr4	136971058	136971258	+	823.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14342.0	NM_007939	13842.0	Mm.1390	NM_007939	ENSMUSG00000028661	Epha8	AW047546|Eek|Hek3|mKIAA1459	Eph receptor A8	protein-coding	2.86581179435481	2.57010632177333	3.99409736614175	2.53169015389312	2.96608209907488	1.80462322207879	1.74101637048411	2.54568794370437	-1.39651147492387	0.0842608315300176	0.445481140170824
Merged-chr11-70500418-1	chr11	70500318	70500518	+	625.0	f0_balb.idr	Intergenic	Intergenic	-4856.0	NM_029360	75604.0	Mm.24400	NM_029360	ENSMUSG00000018919	Tm4sf5	2010003F10Rik|AI323987	transmembrane 4 superfamily member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124582735-4	chr5	124582626	124582826	+	980.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181410, intron 2 of 12)	intron (NM_181410, intron 2 of 12)	3578.0	NM_181410	209357.0	Mm.185467	NM_181410	ENSMUSG00000029387	Gtf2h3	34kDa|5033417D07Rik|BTF2|BTF2 p34|C730029A10|D5Ertd679e|TFIIH	general transcription factor IIH, polypeptide 3	protein-coding	4.15939327091932	4.17428849432719	4.43258265728692	4.6156198858602	3.6269706276389	4.20356744864844	3.68897633548268	4.07307902845309	-0.600267667210414	0.16014059283549	0.62016942789409
Merged-chr7-28740346-2	chr7	28740246	28740446	+	845.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011885, intron 2 of 2)	B3A|SINE|B2	475.0	NM_001360254	24030.0	Mm.358650	NM_011885	ENSMUSG00000045948	Mrps12	AI327385|Rpms12|rps12	mitochondrial ribosomal protein S12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-87961035-4	chr3	87960940	87961140	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10053.0	NM_016701	18008.0	Mm.331129	NM_016701	ENSMUSG00000004891	Nes	AA166324|C78523|ESTM46|Ifaprc2|Marc2|RC2	nestin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-19474253-3	chr3	19474150	19474350	+	966.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34345.0	NM_001163536	66326.0	Mm.45615	NM_025489	ENSMUSG00000027606	Dnajc5b	1700008A05Rik	DnaJ heat shock protein family (Hsp40) member C5 beta	protein-coding	1.94031334220643	2.88705086302907	3.52785794724892	3.78265628640019	3.34889802251794	3.25373498356026	1.90669908885531	3.57766154281241	-0.0806288558902635	0.913139867183889	0.998431161219273
Merged-chr5-120775880-1	chr5	120775780	120775980	+	919.0	f0_balb.idr	intron (NM_145226, intron 1 of 15)	RLTR11A|LTR|ERVK	1779.0	NM_145226	246727.0	Mm.204887	NM_145226	ENSMUSG00000032661	Oas3	Oasl10	2'-5' oligoadenylate synthetase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-86171632-2	chr5	86171532	86171732	+	552.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172712, intron 1 of 32)	intron (NM_172712, intron 1 of 32)	1111.0	NM_172712	231380.0	Mm.34012	NM_172712	ENSMUSG00000035898	Uba6	4930542H01|5730469D23Rik|AU021846|AW124799|E1-L2|Ube1l2	ubiquitin-like modifier activating enzyme 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-23257423-3	chr1	23257320	23257520	+	911.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14849.0	NR_029533	387225.0		NR_029533	ENSMUSG00000065405	Mir30a	Mirn30a|mir-30a|mmu-mir-30a	microRNA 30a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-51480623-4	chr1	51480517	51480717	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2218.0	NM_001310549	109019.0	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-76153501-2	chr14	76153401	76153601	+	972.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4B|LINE|L1	42610.0	NM_013745	27275.0	Mm.21138	NM_013745	ENSMUSG00000022009	Nufip1	Nufip	nuclear fragile X mental retardation protein interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-76860472-2	chr16	76860372	76860572	+	572.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER97b|DNA|hAT-Tip100	-81380.0	NR_155453	102632814.0		NR_155453	ENSMUSG00000109333	Gm30790	Gm45028	predicted gene, 30790	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85479600-12	chr12	85479470	85479670	+	915.736084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5680.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-39925019-3	chr1	39924891	39925091	+	903.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252202, intron 2 of 29)	MTC|LTR|ERVL-MaLR	24078.0	NM_008696	26921.0	Mm.491139	NM_008696	ENSMUSG00000026074	Map4k4	9430080K19Rik|AU043147|AU045934|AW046177|HGK|Nik	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-110774495-2	chr5	110774395	110774595	+	862.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359219, intron 5 of 5)	intron (NM_001359219, intron 5 of 5)	3546.0	NR_152254	100504049.0	Mm.474515	NR_152254	ENSMUSG00000086401	Gm15559	-	predicted gene 15559	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-65186585-4	chr1	65186505	65186705	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001111320)	promoter-TSS (NM_001111320)	-80.0	NM_001310624	18711.0	Mm.38370	NM_011086	ENSMUSG00000025949	Pikfyve	5230400C17Rik|Pip5k|Pip5k3|Pipk5k3|PipkIII|p235	phosphoinositide kinase, FYVE type zinc finger containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-76860319-2	chr18	76860219	76860419	+	557.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001109743, exon 2 of 9)	exon (NM_001109743, exon 2 of 9)	3914.0	NM_001109743	664805.0	Mm.329543	NM_001109743	ENSMUSG00000091519	Skor2	Corl2|EG664805|Fussel18|Gm7348	SKI family transcriptional corepressor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-43050717-3	chr17	43050596	43050796	+	799.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178589, intron 3 of 5)	MIR|SINE|MIR	34141.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-155374097-2	chr2	155373997	155374197	+	689.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7759.0	NM_178111	68728.0	Mm.293605	NM_178111	ENSMUSG00000038375	Trp53inp2	1110029F20Rik|Tp53inp2	transformation related protein 53 inducible nuclear protein 2	protein-coding	0.969532675406759	0.196483916577012	1.12226902151176	0.181925811693657	0.172822913320274	0.60168291155573	0.190112653240888	0.18304332513272	-2.59169748098336	0.215056852457441	1
Merged-chr4-147934765-1	chr4	147934665	147934865	+	543.0	f1_c57bl6.idr	intron (NM_011122, intron 1 of 18)	intron (NM_011122, intron 1 of 18)	2011.0	NM_011122	18822.0	Mm.23951	NM_011122	ENSMUSG00000019055	Plod1	2410042F05Rik|AI854890|AV007929|Lh1|Plod	procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-132217267-4	chr2	132217166	132217366	+	737.80835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30522.0	NM_027478	70612.0	Mm.30116	NM_027478	ENSMUSG00000027341	Tmem230	5730494N06Rik|AA407821	transmembrane protein 230	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-55435770-2	chr12	55435670	55435870	+	548.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36945.0	NM_011968	26443.0	Mm.30210	NM_011968	ENSMUSG00000021024	Psma6	IOTA	proteasome (prosome, macropain) subunit, alpha type 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-51534019-4	chr6	51533923	51534123	+	944.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361581, intron 1 of 6)	intron (NM_001361581, intron 1 of 6)	9763.0	NM_001361580	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-33642351-2	chr2	33642251	33642451	+	1000.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_046275, exon 3 of 3)	non-coding (NR_046275, exon 3 of 3)	1158.0	NR_046275	100504399.0	Mm.72070	NM_177842		C130021I20Rik	-	Riken cDNA C130021I20 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-164825204-2	chr2	164825104	164825304	+	747.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_028028, exon 2 of 2)	exon (NM_028028, exon 2 of 2)	2518.0	NM_028028	71971.0	Mm.161149	NM_028028	ENSMUSG00000017764	Zswim1	2410003H12Rik|AI850991|BB046916	zinc finger SWIM-type containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-9605960-4	chr3	9605900	9606100	+	847.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133218, intron 1 of 8)	intron (NM_133218, intron 1 of 8)	4085.0	NM_133218	170753.0	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-70698499-3	chr12	70698384	70698584	+	729.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-127030.0	NM_028127	319710.0	Mm.2962	NM_028127	ENSMUSG00000048285	Frmd6	2610019M19Rik|4930488L10Rik|AW212977|Willin	FERM domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-95525101-1	chr13	95525001	95525201	+	660.0	f1_c57bl6.idr	exon (NM_007974, exon 1 of 2)	exon (NM_007974, exon 1 of 2)	139.0	NM_007974	14063.0	Mm.1614	NM_007974	ENSMUSG00000021678	F2rl1	Gpcr11|PAR-2|Par2	coagulation factor II (thrombin) receptor-like 1	protein-coding	-0.193935827275163	-0.429502169658866	-0.432900555725786	-0.0402339387412772	0.00744655371966341	-0.428733347065729	-0.432152748142568	-0.435053950015787	-0.414898773290326	0.872928978118377	1
Merged-chr17-5935035-4	chr17	5934929	5935129	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-6251.0	NM_001113353	20975.0	Mm.236068	NM_011523	ENSMUSG00000023805	Synj2	AI481647|SJ2|mKIAA0348	synaptojanin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83646921-2	chr11	83646821	83647021	+	760.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_011337)	TTS (NM_011337)	2457.0	NM_011337	20302.0	Mm.1282	NM_011337	ENSMUSG00000000982	Ccl3	AI323804|G0S19-1|LD78alpha|MIP-1alpha|MIP1-(a)|MIP1-alpha|Mip1a|Scya3	chemokine (C-C motif) ligand 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-95347720-3	chr11	95347593	95347793	+	782.650024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172543, intron 1 of 7)	intron (NM_172543, intron 1 of 7)	10675.0	NM_172543	215512.0	Mm.262113	NM_172543	ENSMUSG00000038893	Fam117a	5730593F17Rik|AW548096	family with sequence similarity 117, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-78203541-2	chr13	78203441	78203641	+	875.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045195, intron 1 of 2)	CpG	-4668.0	NM_010151	13865.0	Mm.439653	NM_010151	ENSMUSG00000069171	Nr2f1	COUP-TF1|COUP-TFI|COUPTFA|EAR-3|EAR3|Erbal3|SVP44|Tcfcoup1	nuclear receptor subfamily 2, group F, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-95775724-3	chr4	95775623	95775823	+	959.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029347, intron 8 of 10)	intron (NM_029347, intron 8 of 10)	191312.0	NR_045777	319247.0	Mm.473527	NM_175680	ENSMUSG00000044125	9530080O11Rik	-	RIKEN cDNA 9530080O11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-76137679-2	chr5	76137579	76137779	+	700.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A2|LTR|ERVL-MaLR	-2594.0	NM_020611	57357.0	Mm.289446	NM_020611	ENSMUSG00000029233	Srd5a3	1110025P14Rik|A430076C09|AV364670|AW987574|D730040M03Rik|H5ar|S5AR 3|Srd5a2l	steroid 5 alpha-reductase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-83039543-1	chr15	83039443	83039643	+	545.0	f1_c57bl6.idr	Intergenic	B1F2|SINE|Alu	-6146.0	NM_001271411	74039.0	Mm.32584	NM_028728	ENSMUSG00000058099	Nfam1	4921501M20Rik|Cnaip	Nfat activating molecule with ITAM motif 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-49733863-6	chr2	49733656	49733856	+	774.56665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008449, intron 15 of 25)	intron (NM_008449, intron 15 of 25)	-53930.0	NM_027990	71897.0	Mm.41381	NM_027990	ENSMUSG00000026765	Lypd6b	2310010M24Rik|AW049525	LY6/PLAUR domain containing 6B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101134533-4	chr15	101134433	101134633	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001277255, intron 3 of 11)	intron (NM_001277255, intron 3 of 11)	6011.0	NM_001277257	11482.0	Mm.279542	NM_009612	ENSMUSG00000000530	Acvrl1	AI115505|AI427544|Acvrlk1|Alk1	activin A receptor, type II-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-41096256-3	chr12	41096151	41096351	+	908.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053122, intron 3 of 6)	ORR1D2|LTR|ERVL-MaLR	72161.0	NM_053122	93757.0	Mm.363813	NM_053122	ENSMUSG00000056899	Immp2l	AI853880|IMP2|Tg(HLA-A/H2-D)2Enge	IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-80720012-2	chr18	80719912	80720112	+	716.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4b|LINE|L1	-6941.0	NM_001164110	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106487014-2	chr11	106486914	106487114	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023913, intron 1 of 21)	intron (NM_023913, intron 1 of 21)	782.0	NM_023913	78943.0	Mm.340943	NM_023913	ENSMUSG00000020715	Ern1	9030414B18Rik|AI225830|C85377|Ire1a|Ire1alpha|Ire1p	endoplasmic reticulum (ER) to nucleus signalling 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-153725099-1	chr3	153724999	153725199	+	609.0	f0_balb.idr	promoter-TSS (NM_011372)	promoter-TSS (NM_011372)	34.0	NM_011372	20447.0	Mm.296453	NM_011372	ENSMUSG00000052544	St6galnac3	Siat7c	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-149174156-4	chr6	149174055	149174255	+	988.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153963, intron 1 of 4)	intron (NR_153963, intron 1 of 4)	14557.0	NM_001356344	232566.0	Mm.209147	NM_001113424	ENSMUSG00000068250	Amn1	5830467E07Rik|A230083D09|C730024G19Rik	antagonist of mitotic exit network 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-80093012-2	chr15	80092912	80093112	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_207708, intron 1 of 3)	intron (NM_207708, intron 1 of 3)	1678.0	NM_207708	20972.0	Mm.230301	NM_009303	ENSMUSG00000022415	Syngr1	R75468|Syngr1b|p29	synaptogyrin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-53802038-4	chr19	53801942	53802142	+	879.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170847, intron 1 of 13)	intron (NM_001170847, intron 1 of 13)	-90189.0	NM_011050	18569.0	Mm.1605	NM_011050	ENSMUSG00000024975	Pdcd4	D19Ucla1|Ma3|Tis	programmed cell death 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-32349814-4	chr11	32349719	32349919	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177364, intron 1 of 12)	intron (NM_177364, intron 1 of 12)	2008.0	NM_177364	268396.0	Mm.227616	NM_177364	ENSMUSG00000040711	Sh3pxd2b	G431001E03Rik|TSK4|fad49	SH3 and PX domains 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-54566799-2	chr12	54566699	54566899	+	610.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER44D|DNA|TcMar-Tigger	79213.0	NR_035439	100316682.0		NR_035439	ENSMUSG00000106344	Mir1892	Mirn1892|mir-1892|mmu-mir-1892	microRNA 1892	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-10774853-2	chr16	10774769	10774969	+	603.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10667.0	NM_009896	12703.0	Mm.130	NM_009896	ENSMUSG00000038037	Socs1	Cish1|Cish7|JAB|SOCS-1|SSI-1	suppressor of cytokine signaling 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-83594864-3	chr12	83594764	83594964	+	946.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_183154, exon 2 of 12)	exon (NM_183154, exon 2 of 12)	2358.0	NM_001359167	217695.0	Mm.59257	NM_183154	ENSMUSG00000042628	Zfyve1	DFCP1|G630053K23|TAFF1|ZNFN2A1|mKIAA1589	zinc finger, FYVE domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19872656-2	chr7	19872556	19872756	+	607.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-11357.0	NM_001033419	330483.0	Mm.260192	NM_001033419	ENSMUSG00000014686	Ceacam16	Gm769	carcinoembryonic antigen-related cell adhesion molecule 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-21650079-4	chr17	21649913	21650113	+	985.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166497)	promoter-TSS (NM_001166497)	-598.0	NM_001166497	73229.0	Mm.296733	NM_001166497	ENSMUSG00000035868	Zfp983	3110052M02Rik|mszf57|mszf71	zinc finger protein 983	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34897699-2	chr17	34897599	34897799	+	862.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_147151)	promoter-TSS (NM_147151)	-793.0	NM_001286575	110147.0	Mm.35345	NM_145830	ENSMUSG00000013787	Ehmt2	Bat8|D17Ertd710e|G9a|KMT1C|NG36	euchromatic histone lysine N-methyltransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100416095-2	chr11	100415995	100416195	+	558.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163481, intron 1 of 9)	intron (NM_001163481, intron 1 of 9)	401.0	NM_001163481	14230.0	Mm.3894	NM_010221	ENSMUSG00000001555	Fkbp10	AI325255|FKBP-10|FKBP-65|FKBP65|Fkbp-rs1|Fkbp1-rs|Fkbp6|Fkbprp	FK506 binding protein 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-101742204-4	chr4	101742126	101742326	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146146, intron 4 of 18)	intron (NM_146146, intron 4 of 18)	24819.0	NM_010704	16847.0	Mm.259282	NM_010704	ENSMUSG00000057722	Lepr	LEPROT|Leprb|Modb1|OB-RGRP|Obr|db|diabetes|obese-like|obl	leptin receptor	protein-coding	6.43966196997619	6.23618740384066	6.77298745021508	5.969272212873	6.03737524231377	6.2319108646783	6.51826477664433	5.56584496724324	-0.282551132653714	0.266669427868612	0.769850768904622
Merged-chr14-67860579-3	chr14	67860470	67860670	+	785.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_105857)	promoter-TSS (NR_105857)	-825.0	NR_105857	102465310.0		NR_105857	ENSMUSG00000098866	Mir6539	Gm27464|mir-6539|mmu-mir-6539	microRNA 6539	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123683846-4	chr5	123683700	123683900	+	968.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359224, intron 1 of 18)	CpG	561.0	NM_019765	56430.0	Mm.241109	NM_019765	ENSMUSG00000049550	Clip1	1110007I12Rik|4631429H07Rik|AV017631|C81039|CLIP-170|CLIP170|CYLN1|Clip50|Rsn|mKIAA4046|restin	CAP-GLY domain containing linker protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-13721390-3	chr3	13721299	13721499	+	873.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357034, intron 1 of 7)	intron (NM_001357034, intron 1 of 7)	-68534.0	NR_040598	75203.0	Mm.490940	NR_040598		4930539N22Rik	-	RIKEN cDNA 4930539N22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-80790453-4	chr12	80790344	80790544	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178682)	promoter-TSS (NM_178682)	-88.0	NM_178682	217684.0	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-109228757-2	chr13	109228657	109228857	+	581.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011056, intron 3 of 16)	intron (NM_011056, intron 3 of 16)	-95987.0	NR_030644	100124489.0		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-72810129-4	chr15	72810079	72810279	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_002864, exon 1 of 1)	non-coding (NR_002864, exon 1 of 1)	145.0	NR_002864	353342.0	Mm.440245	NR_002864	ENSMUSG00000106847	Peg13	-	paternally expressed 13	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-114592490-4	chr9	114592369	114592569	+	930.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153585, intron 18 of 19)	intron (NM_153585, intron 18 of 19)	-28100.0	NM_001042503	636931.0	Mm.17857	NM_001042503	ENSMUSG00000079259	Trim71	2610206G21Rik|AL022943|Gm1127|Lin41|lin-41|mLin41|mlin-41	tripartite motif-containing 71	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21033322-4	chr9	21033204	21033404	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_035438)	promoter-TSS (NR_035438)	-976.0	NR_035438	100316681.0		NR_035438	ENSMUSG00000084663	Mir1900	Mirn1900|mmu-mir-1900	microRNA 1900	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-31095007-4	chr3	31094932	31095132	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011386)	promoter-TSS (NM_011386)	-26.0	NM_001039090	20482.0	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-91310884-2	chr12	91310784	91310984	+	898.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_181815, intron 10 of 25)	intron (NM_181815, intron 10 of 25)	73525.0	NM_181815	75216.0	Mm.312204	NM_181815	ENSMUSG00000061533	Cep128	4930534B04Rik|5430424K18Rik|AI449708|AI480494|E230024F20	centrosomal protein 128	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19356336-2	chr7	19356236	19356436	+	719.791626	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_145822, exon 3 of 3)	3' UTR (NM_145822, exon 3 of 3)	3147.0	NM_145822	70333.0	Mm.171370	NM_145822	ENSMUSG00000047649	Cd3eap	1190028F09|2610103M17Rik|ASE-1|Ase1|CAST|PAF49	CD3E antigen, epsilon polypeptide associated protein	protein-coding	0.621324229434153	1.33621355418753	1.0125540268647	0.824018636756069	1.16980604902036	0.879962576998474	0.647694201726775	1.61493113893651	0.700115654614466	0.636431665487595	0.982417279970648
Merged-chr6-115847210-4	chr6	115847111	115847311	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010774, intron 3 of 7)	B3A|SINE|B2	6130.0	NM_010774	17193.0	Mm.259308	NM_010774	ENSMUSG00000030322	Mbd4	Med1	methyl-CpG binding domain protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-102640192-2	chr4	102640096	102640296	+	909.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50353.0	NM_001177981	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	-1.70135544069701	-1.81276568865923	-1.82173030446212	-1.8290941067965	-1.84032881314662	-1.81082301901796	-1.81970091194313	-1.68672165733678	0.0376840119903866	0.991491645451152	1
Merged-chr19-31972186-4	chr19	31972069	31972269	+	819.520874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	103408.0	NM_001081074	69865.0	Mm.87538	NM_001081074	ENSMUSG00000052595	A1cf	1810073H04Rik|ACF64|ACF65|ASP|Acf|MCM|MerCreMer|Tg(Myh6-cre/Esr1*)1Jmk|mer	APOBEC1 complementation factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-142444293-2	chr5	142444193	142444393	+	568.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_199068, intron 2 of 8)	B4|SINE|B4	-19638.0	NM_172725	231855.0	Mm.78250	NM_172725	ENSMUSG00000039623	Ap5z1	C330006K01Rik	adaptor-related protein complex 5, zeta 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-49009933-1	chr17	49009833	49010033	+	569.0	f1_c57bl6.idr	intron (NM_027452, intron 1 of 2)	intron (NM_027452, intron 1 of 2)	77351.0	NM_027452	70530.0	Mm.133607	NM_027452	ENSMUSG00000040490	Lrfn2	5730420O05Rik|SALM1|mKIAA1246	leucine rich repeat and fibronectin type III domain containing 2	protein-coding	-0.539072095141396	-1.17607782048307	-1.18720726126045	-1.19634931528472	-1.20196491063698	-1.17366602423904	-1.18468779981884	-1.19471289198531	-2.68787187143179	0.435473844436726	1
Merged-chr10-128778546-2	chr10	128778446	128778646	+	985.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-12364.0	NM_001164197	58223.0	Mm.131266	NM_021412	ENSMUSG00000025355	Mmp19	-	matrix metallopeptidase 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-30825238-2	chr10	30825138	30825338	+	684.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17545.0	NM_013904	15214.0	Mm.103573	NM_013904	ENSMUSG00000019789	Hey2	CHF1|Herp1|Hrt2|bHLHb32|hesr2	hairy/enhancer-of-split related with YRPW motif 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80342939-4	chr10	80342816	80343016	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001285435, exon 8 of 13)	exon (NM_001285435, exon 8 of 13)	5532.0	NM_001285435	66548.0	Mm.71891	NM_025629	ENSMUSG00000043822	Adamtsl5	2010109H09Rik|Thsd6	ADAMTS-like 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111442560-4	chr12	111442463	111442663	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009396)	promoter-TSS (NM_009396)	-98.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-72260074-4	chr11	72259968	72260168	+	923.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004148, intron 4 of 11)	intron (NM_001004148, intron 4 of 11)	6536.0	NM_001004148	237831.0	Mm.340778	NM_001004148	ENSMUSG00000020805	Slc13a5	Indy|NaC2/NaCT|Nact|mINDY	solute carrier family 13 (sodium-dependent citrate transporter), member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-100566974-4	chr5	100566867	100567067	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139198, intron 1 of 4)	intron (NM_139198, intron 1 of 4)	5238.0	NM_139198	231507.0	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65534151-2	chr9	65534051	65534251	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45936.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-4202582-4	chr11	4202481	4202681	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134023, intron 1 of 8)	B3|SINE|B2	-15670.0	NM_028022	71962.0	Mm.7852	NM_028022	ENSMUSG00000020424	Gatsl3	2410008K03Rik|Castor1	GATS protein-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-17817752-2	chr2	17817652	17817852	+	652.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-86684.0	NM_028757	74103.0	Mm.120298	NM_028757	ENSMUSG00000053702	Nebl	1200007O21Rik|A630080F05Rik|BB140644|D830029A09Rik|Lnebl	nebulette	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-122678774-4	chr10	122678629	122678829	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_106182)	promoter-TSS (NR_106182)	-33.0	NM_176919	319468.0	Mm.489703	NM_176919	ENSMUSG00000034613	Ppm1h	A430075L18Rik|ARHCL1|C030002B11Rik	protein phosphatase 1H (PP2C domain containing)	protein-coding	4.26639626464776	5.17702342389939	3.29115511450458	4.5260283093723	4.72048941809293	4.04845908802631	4.80582418997608	4.35712568572642	0.0643891951333994	0.887303148026861	0.998431161219273
Merged-chr17-56010486-2	chr17	56010386	56010586	+	722.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_026530, exon 3 of 13)	exon (NM_026530, exon 3 of 13)	1285.0	NM_026530	68047.0	Mm.358710	NM_026530	ENSMUSG00000003199	Mpnd	E130307M08Rik	MPN domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-6453053-4	chr4	6452939	6453139	+	937.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010945, intron 1 of 30)	intron (NM_010945, intron 1 of 30)	1232.0	NM_010945	18201.0	Mm.3059	NM_010945	ENSMUSG00000028245	Nsmaf	AA959567|C630007J05|Fan	neutral sphingomyelinase (N-SMase) activation associated factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-54937920-3	chr18	54937829	54938029	+	947.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360787, intron 2 of 8)	intron (NM_001360787, intron 2 of 8)	52251.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-86948381-2	chr12	86948281	86948481	+	918.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_173735, intron 1 of 3)	intron (NM_173735, intron 1 of 3)	1038.0	NM_001289432	217732.0	Mm.22337	NM_173735	ENSMUSG00000034157	Cipc	2310044G17Rik|AI842544|AI853744|Kiaa1737|mKIAA1737	CLOCK interacting protein, circadian	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-65846782-3	chr5	65846679	65846879	+	672.472229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16790.0	NM_001081105	74734.0	Mm.20323	NM_001081105	ENSMUSG00000029204	Rhoh	5830400A04Rik|AU019774|Arhh	ras homolog family member H	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-76997482-3	chr11	76997366	76997566	+	793.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1131.0	NM_010484	15567.0	Mm.300318	NM_010484	ENSMUSG00000020838	Slc6a4	5-HTT|AI323329|Htt|Sert	solute carrier family 6 (neurotransmitter transporter, serotonin), member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129061535-2	chr4	129061435	129061635	+	768.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029219, intron 1 of 8)	B1_Mur3|SINE|Alu	3264.0	NM_029219	75234.0	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78564262-2	chr15	78564162	78564362	+	655.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_009008, intron 5 of 6)	intron (NM_009008, intron 5 of 6)	8521.0	NM_009008	19354.0	Mm.1972	NM_009008	ENSMUSG00000033220	Rac2	AI323801|AI452260	Rac family small GTPase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-43381121-2	chr11	43381021	43381221	+	813.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6660.0	NR_029558	387164.0		NR_029558	ENSMUSG00000065601	Mir146	Mirn146|miR-146a|mmu-mir-146	microRNA 146	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-7871114-2	chr10	7871014	7871214	+	667.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_172785)	TTS (NM_172785)	34733.0	NR_039563	100628581.0		NR_039563	ENSMUSG00000093060	Mir5104	mir-5104|mmu-mir-5104|mu-mir-5104	microRNA 5104	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-108927220-2	chr7	108927120	108927320	+	762.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175532, intron 1 of 2)	intron (NM_175532, intron 1 of 2)	2938.0	NM_175532	244202.0	Mm.37991	NM_175532	ENSMUSG00000049709	Nlrp10	6430548I20Rik|Nalp10|Napl10|PAN5|Pynod	NLR family, pyrin domain containing 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-155826703-4	chr2	155826600	155826800	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010579, exon 1 of 6)	5' UTR (NM_010579, exon 1 of 6)	225.0	NM_010579	16418.0	Mm.271674	NM_010579	ENSMUSG00000027613	Eif6	1110004P11|AA408895|CAB|Itgb4bp|eIF-6|imc-415|p27(BBP)|p27BBP	eukaryotic translation initiation factor 6	protein-coding	6.78341488171348	6.6074393108568	7.12428495751905	7.07488494592813	6.17312662842042	5.53284005003392	6.16152499726774	6.12098648573329	-0.951066464429922	1.13381951695544e-05	0.000515286612289065
Merged-chr8-70661381-2	chr8	70661281	70661481	+	786.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1643.0	NM_023217	66522.0	Mm.154906	NM_023217	ENSMUSG00000056204	Pgpep1	2810003H13Rik|Gm19458|PAP-I|PGP|PGP-I|PGPI|Pcp	pyroglutamyl-peptidase I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-121330381-4	chr3	121330267	121330467	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155539, intron 2 of 2)	intron (NR_155539, intron 2 of 2)	38627.0	NM_024178	66789.0	Mm.269881	NM_024178	ENSMUSG00000039887	Alg14	5430428G01Rik|AI854024	asparagine-linked glycosylation 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-13725932-2	chr8	13725832	13726032	+	558.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001101519, intron 1 of 3)	intron (NM_001101519, intron 1 of 3)	20043.0	NM_001101519	403185.0	Mm.252143	NM_001101519	ENSMUSG00000090336	4932443I19Rik	A230061C02Rik|Gm1106	RIKEN cDNA 4932443I19 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-66478318-4	chr18	66478239	66478439	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19735.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81402324-1	chr10	81402224	81402424	+	1000.0	f0_balb.idr	intron (NM_026756, intron 8 of 8)	intron (NM_026756, intron 8 of 8)	-7251.0	NR_152732	102634174.0	Mm.392213	NR_152732	ENSMUSG00000085327	Gm16104	-	predicted gene 16104	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-119779407-4	chr3	119779291	119779491	+	980.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310711, intron 2 of 13)	L1ME2z|LINE|L1	3997.0	NM_001310711	56195.0	Mm.29966	NM_019550	ENSMUSG00000028134	Ptbp2	Ptb2|brPTB|nPTB	polypyrimidine tract binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71664605-2	chr8	71664505	71664705	+	705.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001029873, intron 3 of 41)	intron (NM_001029873, intron 3 of 41)	7152.0	NM_001029873	382018.0	Mm.334606	NM_001029873	ENSMUSG00000034799	Unc13a	2410078G03Rik|Munc13-1	unc-13 homolog A (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96564419-1	chr3	96564319	96564519	+	603.0	f0_balb.idr	intron (NR_040409, intron 1 of 3)	intron (NR_040409, intron 1 of 3)	2382.0	NR_040409	100038464.0	Mm.475126	NR_040409	ENSMUSG00000074398	Gm15441	-	predicted gene 15441	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-154890276-3	chr2	154890183	154890383	+	878.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026030, intron 1 of 8)	intron (NM_026030, intron 1 of 8)	2623.0	NM_026030	67204.0	Mm.377134	NM_026030	ENSMUSG00000074656	Eif2s2	2810026E11Rik|38kDa|AA408636|AA571381|AA986487|AW822225|D2Ertd303e|EIF2|EIF2B	eukaryotic translation initiation factor 2, subunit 2 (beta)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25685601-2	chr7	25685501	25685701	+	773.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_172148, intron 2 of 2)	intron (NM_172148, intron 2 of 2)	-1401.0	NM_011577	21803.0	Mm.248380	NM_011577	ENSMUSG00000002603	Tgfb1	TGF-beta1|TGFbeta1|Tgfb|Tgfb-1	transforming growth factor, beta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-64740842-4	chr9	64740722	64740922	+	934.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3066.0	NM_017382	53869.0	Mm.1387	NM_017382	ENSMUSG00000004771	Rab11a	-	RAB11A, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-30040211-3	chr16	30040114	30040314	+	859.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045878)	promoter-TSS (NR_045878)	-735.0	NR_045878	71528.0	Mm.297640	NR_045878		9030404E10Rik	-	RIKEN cDNA 9030404E10 gene	ncRNA	0.146544857354232	-0.129702100730037	-0.135825337809448	0.194168832371348	-0.147342405710661	-0.12832762169115	0.875234803826157	-0.139746704972385	1.27576414167464	0.573009544246341	1
Merged-chr4-116336470-3	chr4	116336365	116336565	+	686.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042743, intron 6 of 29)	RLTR12B|LTR|ERVK	113718.0	NM_001355586	18710.0	Mm.253819	NM_181585	ENSMUSG00000028698	Pik3r3	AA414954|p55|p55pik	phosphoinositide-3-kinase regulatory subunit 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-155412910-4	chr1	155412817	155413017	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011273, intron 1 of 14)	intron (NM_011273, intron 1 of 14)	4527.0	NM_011273	19775.0	Mm.266215	NM_011273	ENSMUSG00000026469	Xpr1	Rmc-1|Rmc1|Sxv|Syg1|XR	xenotropic and polytropic retrovirus receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-38482986-2	chr16	38482886	38483086	+	706.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359898, intron 4 of 5)	B2_Mm2|SINE|B2	24053.0	NM_009855	12519.0	Mm.89474	NM_009855	ENSMUSG00000075122	Cd80	B71|Cd28l|Ly-53|Ly53|MIC17|TSA1	CD80 antigen	protein-coding	0.360603732274146	1.00431367918389	0.375762608301758	0.6799034852024	0.640163326487469	1.01573053492804	0.377387025940493	0.684757376288516	0.365078945686114	0.83385361667408	1
Merged-chr7-122477179-2	chr7	122477079	122477279	+	795.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001316672, intron 5 of 16)	intron (NM_001316672, intron 5 of 16)	188054.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3623567-1	chr19	3623467	3623667	+	631.0	f1_balb.idr	intron (NM_008513, intron 7 of 22)	B2_Mm2|SINE|B2	-47818.0	NM_028999	52036.0	Mm.284686	NM_028999	ENSMUSG00000024908	Ppp6r3	4930528G08Rik|9130026N02Rik|D19Bwg1430e|D19Ertd703e|Pp6r3|Ppcs3|Pptcs3|Sapl|Saps3|mKIAA1558	protein phosphatase 6, regulatory subunit 3	protein-coding	1.98277373766939	1.64579755637172	1.13962668156287	2.72314853573472	2.00041395976619	1.65791655410187	1.14557358528531	2.54592205335066	-0.180979983811829	0.872248737540887	0.998431161219273
Merged-chr8-66444384-4	chr8	66444298	66444498	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175188, intron 6 of 7)	intron (NM_175188, intron 6 of 7)	42132.0	NM_025465	66282.0	Mm.294985	NM_025465	ENSMUSG00000025591	Tma16	1810029B16Rik	translation machinery associated 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-63106407-2	chr14	63106307	63106507	+	684.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16055.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80157292-2	chr10	80157192	80157392	+	665.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_021565, exon 9 of 9)	3' UTR (NM_021565, exon 9 of 9)	7610.0	NM_001305799	59090.0	Mm.143813	NM_021565	ENSMUSG00000035621	Midn	3000003C15Rik	midnolin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72356724-2	chr6	72356624	72356824	+	767.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_144916, exon 3 of 8)	exon (NM_144916, exon 3 of 8)	1241.0	NM_144916	232086.0	Mm.491165	NM_144916	ENSMUSG00000055912	Tmem150a	BC014685|Tmem150	transmembrane protein 150A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-65493393-4	chr5	65493282	65493482	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133697)	promoter-TSS (NM_133697)	-547.0	NM_133697	68552.0	Mm.10709	NM_133697	ENSMUSG00000037822	Smim14	1110003E01Rik|1700127H04Rik|5430439C17Rik|MAd4	small integral membrane protein 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167717428-4	chr2	167717371	167717571	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26294.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114858844-3	chr11	114858746	114858946	+	776.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_147217, intron 1 of 3)	intron (NM_147217, intron 1 of 3)	6816.0	NM_147217	70355.0	Mm.242413	NM_147217	ENSMUSG00000051043	Gprc5c	1110028I06Rik|3200002M13Rik|Raig3	G protein-coupled receptor, family C, group 5, member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-66082365-2	chr5	66082265	66082465	+	743.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_139065, intron 2 of 6)	intron (NM_139065, intron 2 of 6)	15814.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-30403680-4	chr6	30403596	30403796	+	942.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311087, intron 1 of 8)	intron (NM_001311087, intron 1 of 8)	1841.0	NM_001311087	76788.0	Mm.277308	NM_029742	ENSMUSG00000029775	Klhdc10	2410127E18Rik|AI593221|mKIAA0265	kelch domain containing 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-142342374-4	chr7	142342270	142342470	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177265, intron 3 of 3)	L1MB3|LINE|L1	29889.0	NM_177265	320802.0	Mm.154486	NM_177265	ENSMUSG00000045777	Ifitm10	6330512M04Rik|AI848576|DSPA3	interferon induced transmembrane protein 10	protein-coding	3.05093741491376	1.23797744027239	1.69099715768138	2.22751952429187	2.32189755719742	2.80945849416873	1.89099999369758	1.18036938439814	-0.141289383897066	0.894789430082856	0.998431161219273
Merged-chr4-140703574-2	chr4	140703479	140703679	+	807.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173867, intron 2 of 12)	RMER10A|LTR|ERVL	2106.0	NM_173867	108911.0	Mm.253	NM_173867	ENSMUSG00000040945	Rcc2	2610510H01Rik|2610529N02Rik|AA536646|AA675016|Td60|mKIAA1470	regulator of chromosome condensation 2	protein-coding	1.01535558658443	2.44678035802896	0.581528108435771	0.556114823210684	1.02882800093035	3.00426778403584	0.588561852039252	0.560649115363628	0.764876254424588	0.775099089097815	0.998431161219273
Merged-chr7-73451830-4	chr7	73451732	73451932	+	853.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081345, exon 33 of 39)	exon (NM_001081345, exon 33 of 39)	-76058.0	NR_040324	319783.0	Mm.349813	NR_040324	ENSMUSG00000097756	A730056A06Rik	C76391	RIKEN cDNA A730056A06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-4921606-2	chr7	4921506	4921706	+	563.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_201355)	promoter-TSS (NM_201355)	-645.0	NM_201355	269854.0	Mm.42652	NM_201355	ENSMUSG00000035285	Nat14	BC047219	N-acetyltransferase 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95135846-4	chr3	95135761	95135961	+	968.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153121, intron 1 of 2)	intron (NM_153121, intron 1 of 2)	1773.0	NM_153121	217779.0	Mm.341945	NM_153121	ENSMUSG00000053769	Lysmd1	2610022K04Rik|AI415311	LysM, putative peptidoglycan-binding, domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106273047-4	chr11	106272938	106273138	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001130187)	promoter-TSS (NM_001130187)	-66.0	NM_001130187	83796.0	Mm.21772	NM_031878	ENSMUSG00000078619	Smarcd2	AW322457|Baf60b	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-97302106-1	chr13	97302006	97302206	+	1000.0	f0_balb.idr	Intergenic	Intergenic	61001.0	NM_007930	13803.0	Mm.241073	NM_007930	ENSMUSG00000041773	Enc1	Nrpb|PIG10	ectodermal-neural cortex 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-25473167-4	chr14	25473120	25473320	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	14035.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-55969324-3	chr16	55969222	55969422	+	921.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024218, intron 3 of 5)	B1_Mm|SINE|Alu	3047.0	NM_024218	68193.0	Mm.29221	NM_024218	ENSMUSG00000098274	Rpl24	0610008L05Rik|Bst	ribosomal protein L24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-117126208-4	chr4	117126108	117126308	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175030)	promoter-TSS (NM_175030)	-483.0	NR_024078	78611.0	Mm.446227	NM_001033187		Btbd19	9530048O09Rik|BB115071	BTB (POZ) domain containing 19	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43001834-2	chr4	43001734	43001934	+	675.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001163233)	TTS (NM_001163233)	-1327.0	NM_009503	269523.0	Mm.245976	NM_009503	ENSMUSG00000028452	Vcp	3110001E05|CDC48|p97|p97/VCP	valosin containing protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123132640-6	chr5	123132467	123132667	+	887.6416630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175092)	promoter-TSS (NM_175092)	62.0	NM_175092	23912.0	Mm.253876	NM_175092	ENSMUSG00000029449	Rhof	AI845056|AV026554|Arhf|Ifld1|Rif	ras homolog family member F (in filopodia)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-105615179-2	chr5	105615100	105615300	+	786.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-84769.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	-0.42995504971734	-0.688878038134669	-0.879214611943061	-0.881309234988595	-0.884257070125748	-0.684600481932383	-0.878614531008879	-0.880943818463389	-1.84123045444944	0.520577238012123	1
Merged-chr15-101239200-2	chr15	101239100	101239300	+	739.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14014.0	NR_045328	380977.0	Mm.399924	NR_045326	ENSMUSG00000097915	A330009N23Rik	-	RIKEN cDNA A330009N23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-8984570-4	chr19	8984484	8984684	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4700.0	NR_104460	66395.0	Mm.203866	NM_009643	ENSMUSG00000069833	Ahnak	DY6	AHNAK nucleoprotein (desmoyokin)	protein-coding	5.53759293105237	5.87320618400073	5.6110029241238	5.05666074076602	5.59577068518122	5.64104785941369	5.77178389608813	5.00750986946651	-0.0160612952453506	0.956012942342453	0.998431161219273
Merged-chr13-103918600-3	chr13	103918501	103918701	+	743.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005868, intron 1 of 26)	intron (NM_001005868, intron 1 of 26)	1985.0	NM_001289473	59079.0	Mm.277354	NM_021563	ENSMUSG00000021709	Erbin	1700028E05Rik|Erbb2ip|mKIAA1225	Erbb2 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-122154085-4	chr2	122154005	122154205	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026251, intron 2 of 17)	intron (NM_026251, intron 2 of 17)	6418.0	NM_009735	12010.0	Mm.163	NM_009735	ENSMUSG00000060802	B2m	Ly-m11|beta2-m|beta2m	beta-2 microglobulin	protein-coding	3.73853782960331	5.01050286673799	3.91182973130807	4.8474114734015	4.00647538744694	4.28522218512941	3.60434458910885	4.02488878373399	-0.639834984577838	0.167864768966169	0.633938930825383
Merged-chr4-147809799-4	chr4	147809703	147809903	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001127189)	promoter-TSS (NM_001127189)	-15.0	NM_001127189	100041677.0	Mm.327194	NM_001127189	ENSMUSG00000078495	Zfp984	Gm13157	zinc finger protein 984	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-45762097-2	chr17	45761998	45762198	+	782.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_152153, intron 2 of 4)	intron (NR_152153, intron 2 of 4)	27592.0	NR_152153	433111.0	Mm.213441	NR_152153	ENSMUSG00000097727	F630040K05Rik	-	RIKEN cDNA F630040K05 gene	ncRNA	0.919791467217147	0.302744553955407	0.297733733168931	0.85659408610877	0.800052411546812	0.303880688433218	0.298834773181242	0.29456823384852	-1.2940012544668	0.53252251747955	1
Merged-chr3-105841747-4	chr3	105841654	105841854	+	875.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER20|DNA|hAT-Charlie	26187.0	NR_045845	433637.0	Mm.331285	NR_045845	ENSMUSG00000104835	Gm5547	EG433637	predicted gene 5547	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-16983336-4	chr16	16983238	16983438	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011949)	promoter-TSS (NM_011949)	-44.0	NM_001357115	26413.0	Mm.196581	NM_011949	ENSMUSG00000063358	Mapk1	9030612K14Rik|AA407128|AU018647|C78273|ERK|Erk2|MAPK2|PRKM2|Prkm1|p41mapk|p42mapk	mitogen-activated protein kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-44052758-3	chr5	44052671	44052871	+	916.25	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163578, intron 3 of 22)	intron (NM_001163578, intron 3 of 22)	41997.0	NM_001163581	19126.0	Mm.6250	NM_008935	ENSMUSG00000029086	Prom1	4932416E19Rik|AC133|CD133|Prom|Prom-1|Proml1	prominin 1	protein-coding	5.34912640777987	5.81025611062836	5.55964672114376	6.01193622661777	2.79252959565274	2.24096994366993	3.86726577277679	2.83074783648744	-3.34511511931135	2.43036109777952e-14	1.15103180728258e-11
Merged-chr15-59048218-2	chr15	59048118	59048318	+	600.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144800, intron 3 of 14)	intron (NM_144800, intron 3 of 14)	33808.0	NM_001146180	211401.0	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-64199047-4	chr1	64198937	64199137	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-77648.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-32594124-3	chr19	32594021	32594221	+	963.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1594.0	NM_001201470	23972.0	Mm.203916	NM_011864	ENSMUSG00000024899	Papss2	1810018P12Rik|AI159688|AtpsU2|Atpsk2|Sk2|bm	3'-phosphoadenosine 5'-phosphosulfate synthase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-92603585-3	chr5	92603499	92603699	+	742.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175096, intron 1 of 1)	intron (NM_175096, intron 1 of 1)	548.0	NM_175096	52331.0	Mm.21965	NM_175096	ENSMUSG00000047963	Stbd1	D530019K15Rik|D5Ertd593e	starch binding domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-30672118-4	chr14	30671999	30672199	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177815, intron 6 of 12)	intron (NM_177815, intron 6 of 12)	17724.0	NM_177815	328370.0	Mm.259657	NM_177815	ENSMUSG00000052395	Rft1	D930025H04	RFT1 homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-30872693-2	chr16	30872593	30872793	+	876.1666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	208739.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-30625114-1	chr5	30625014	30625214	+	559.0	f0_balb.idr	3' UTR (NM_010608, exon 2 of 2)	3' UTR (NM_010608, exon 2 of 2)	-22822.0	NR_049199	100885838.0		NR_049199	ENSMUSG00000093710	Mir5625	Gm23930|mmu-mir-5625	microRNA 5625	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-34193220-4	chr18	34193112	34193312	+	875.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27772.0	NM_007462	11789.0	Mm.384171	NM_007462	ENSMUSG00000005871	Apc	AI047805|AU020952|AW124434|CC1|Min|mAPC	adenomatosis polyposis coli	protein-coding	1.85831916591832	1.54225575756822	1.49843462223797	1.81655540551156	2.57432395848006	2.65573801235281	1.88194962473417	2.30653065023172	1.86205086507182	0.0475797089693852	0.316372639286098
Merged-chr19-60820569-2	chr19	60820479	60820679	+	681.833374	f0_balb.idr|f1_c57bl6.idr	intron (NM_026437, intron 3 of 8)	intron (NM_026437, intron 3 of 8)	9024.0	NM_001347464	67894.0	Mm.26148	NM_026437	ENSMUSG00000024993	Fam45a	1810055E12Rik	family with sequence similarity 45, member A	protein-coding	2.81070034670935	2.67835297944752	1.7794353077616	2.41242716708255	2.94794358134032	1.85414344910347	1.3114375836563	1.7388507493368	-0.71542041758793	0.458100548651942	0.919570891419578
Merged-chr5-74671654-2	chr5	74671553	74671753	+	996.083374	f0_balb.idr|f1_balb.idr	intron (NM_001159578, intron 1 of 12)	intron (NM_001159578, intron 1 of 12)	6219.0	NM_001159580	16924.0	Mm.440403	NM_010727	ENSMUSG00000029228	Lnx1	Lnx	ligand of numb-protein X 1	protein-coding	2.4630842260895	2.68227176207032	2.37231861610948	1.50830642721638	4.09915138959762	5.04850917365351	5.53674789627716	4.2526159612685	3.72717026472559	1.7340837755451e-09	2.76179696535267e-07
Merged-chr6-28807218-3	chr6	28807117	28807317	+	798.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019776, intron 16 of 23)	intron (NM_019776, intron 16 of 23)	24530.0	NM_138682	192198.0	Mm.443660	NM_138682	ENSMUSG00000049939	Lrrc4	MBAG1|NGL-2|NGL2|NLG-2|Nag14	leucine rich repeat containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-18608977-4	chr2	18608872	18609072	+	980.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63490.0	NM_147778	12238.0	Mm.249586	NM_147778	ENSMUSG00000051154	Commd3	AW550818|Bup|D2Ertd542e	COMM domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-32168395-4	chr14	32168304	32168504	+	983.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019744, intron 1 of 9)	intron (NM_019744, intron 1 of 9)	2615.0	NM_019744	27057.0	Mm.371598	NM_019744	ENSMUSG00000056234	Ncoa4	ARA70|Rfg	nuclear receptor coactivator 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41914227-3	chr19	41914127	41914327	+	902.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023418, intron 1 of 3)	intron (NM_023418, intron 1 of 3)	2356.0	NM_023418	18648.0	Mm.16783	NM_023418	ENSMUSG00000011752	Pgam1	2310050F24Rik|Pgam-1	phosphoglycerate mutase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100504101-2	chr7	100504001	100504201	+	785.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153527, intron 6 of 7)	intron (NM_153527, intron 6 of 7)	10714.0	NM_153527	69387.0	Mm.278554	NM_153527	ENSMUSG00000030708	Dnajb13	1700014P03Rik|Tsarg	DnaJ heat shock protein family (Hsp40) member B13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90455051-2	chr2	90454951	90455151	+	969.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 11 of 23)	ORR1D1|LTR|ERVL-MaLR	24123.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-57571948-3	chr19	57571853	57572053	+	695.944458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	-39081.0	NM_181415	226255.0	Mm.245340	NM_181415	ENSMUSG00000054843	Atrnl1	AI504415|AW555641|Alp|Atrnl|Atrnlp	attractin like 1	protein-coding	0.976379920334911	1.14853078652675	1.09387103156118	0.467622044653556	0.457127718746975	0.486539841608632	1.2157945671687	0.468910922449322	-1.17837333158867	0.503086516022297	1
Merged-chr8-105606706-4	chr8	105606593	105606793	+	964.589294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081241, intron 1 of 21)	intron (NM_001081241, intron 1 of 21)	1464.0	NM_001081241	75687.0	Mm.41261	NM_001081241	ENSMUSG00000038604	Ripor1	2310066E14Rik|AI837433|Fam65a	RHO family interacting cell polarization regulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-57558404-4	chr16	57558279	57558479	+	947.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177871, intron 1 of 1)	intron (NM_001177871, intron 1 of 1)	9137.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117404060-3	chr8	117403964	117404164	+	734.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028941, intron 3 of 20)	intron (NM_028941, intron 3 of 20)	-48959.0	NR_106045	102466801.0		NR_106045	ENSMUSG00000099062	Mir7077	Gm27774|mmu-mir-7077	microRNA 7077	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-50149315-1	chr17	50149215	50149415	+	606.0	f1_balb.idr	intron (NM_181397, intron 2 of 9)	intron (NM_181397, intron 2 of 9)	41182.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	-1.43172712806865	-1.3992492906874	-1.40907085678131	-1.41713858359971	-0.932192548427885	-1.39712091634321	-1.40684746950024	-1.41569446435649	2.19283191591698	0.528233640655333	1
Merged-chr11-69991003-4	chr11	69990911	69991111	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019749)	promoter-TSS (NM_019749)	-359.0	NM_019749	56486.0	Mm.272460	NM_019749	ENSMUSG00000018567	Gabarap	-	gamma-aminobutyric acid receptor associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-101078405-2	chr9	101078305	101078505	+	654.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001100451, intron 1 of 1)	intron (NM_001100451, intron 1 of 1)	3643.0	NM_001100451	77853.0	Mm.326206	NM_001100451	ENSMUSG00000066415	Msl2	E130103E02Rik|Msl2l1|Rnf184	MSL complex subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-150216262-4	chr5	150216172	150216372	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43658.0	NM_172887	320365.0	Mm.216590	NM_172887	ENSMUSG00000056602	Fry	13CDNA73|9330186A19Rik|AF346502|AI462658|C87180|D930046M03|cg003|mKIAA4143	FRY microtubule binding protein	protein-coding	5.07549096492251	5.38659893265115	5.26322284624663	5.01242223625798	4.57212319441474	4.47014215507113	4.4445852947866	3.67384013254112	-1.04554740575804	0.00312497009484294	0.0467110355455884
Merged-chr12-4599950-3	chr12	4599873	4600073	+	932.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198969, intron 1 of 16)	intron (NM_001198969, intron 1 of 16)	6965.0	NM_001198968	20403.0	Mm.341204	NM_011365	ENSMUSG00000020640	Itsn2	AI327390|Ese2|Sh3d1B|Sh3p18|mKIAA1256	intersectin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-120172421-4	chr6	120172333	120172533	+	993.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016718, intron 1 of 3)	MLT1F|LTR|ERVL-MaLR	-21390.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-51397310-2	chr13	51397210	51397410	+	619.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11308.0	NM_010101	13610.0	Mm.136736	NM_010101	ENSMUSG00000067586	S1pr3	AI132464|Edg3|Lpb3|S1p3	sphingosine-1-phosphate receptor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83618574-7	chr11	83618495	83618695	+	928.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_036453, intron 5 of 8)	intron (NR_036453, intron 5 of 8)	-25508.0	NM_009139	20305.0	Mm.137	NM_009139	ENSMUSG00000018927	Ccl6	MRP-1|Scya6|c10	chemokine (C-C motif) ligand 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128757355-2	chr2	128757255	128757455	+	668.974976	f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 6 of 18)	MT2B1|LTR|ERVL	58440.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-133118357-3	chr1	133118259	133118459	+	667.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-12807.0	NM_133819	108954.0	Mm.293628	NM_133819	ENSMUSG00000046062	Ppp1r15b	1810033K10Rik|AI606441|C530022L24Rik|CReP	protein phosphatase 1, regulatory (inhibitor) subunit 15b	protein-coding	3.63469091803435	4.79221552898946	3.65754864246634	3.20953588509821	2.5985399999852	3.45205379002238	3.52213755468248	3.49526699236109	-0.956870565595485	0.0996767653811325	0.49093671225075
Merged-chr14-69853075-4	chr14	69852985	69853185	+	985.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028560, intron 3 of 6)	intron (NM_028560, intron 3 of 6)	12678.0	NM_028526	73523.0	Mm.23509	NM_028526	ENSMUSG00000022085	Pebp4	PEBP-4	phosphatidylethanolamine binding protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-8140435-4	chr17	8140354	8140554	+	975.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026611, intron 4 of 8)	intron (NM_026611, intron 4 of 8)	7334.0	NM_001083938	100037283.0	Mm.426736	NM_001083938	ENSMUSG00000095687	Rnaset2a	0610007O07Rik|4833423A10Rik|4930532K22Rik|C79750|RNASE6PL|Rnaset2	ribonuclease T2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35250028-2	chr17	35249911	35250111	+	889.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_019693, intron 6 of 10)	intron (NM_019693, intron 6 of 10)	-1278.0	NR_106169	102465886.0		NR_106169	ENSMUSG00000098269	Mir8094	Gm27513|mmu-mir-8094	microRNA 8094	ncRNA	1.71588717629009	2.48498585578445	2.40256933068688	1.95801396139821	2.42290736181695	2.24593093746929	2.02556711846715	2.781977861067	0.540317135424942	0.528436339637067	0.949209944897898
Merged-chr5-122061100-3	chr5	122060985	122061185	+	900.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11234.0	NM_001312908	13048.0	Mm.156172	NM_007804	ENSMUSG00000042589	Cux2	1700051K22Rik|Cutl2|Cux-2	cut-like homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-23285198-2	chr16	23285098	23285298	+	622.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252505, intron 2 of 7)	intron (NM_001252505, intron 2 of 7)	-5272.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69691537-2	chr11	69691437	69691637	+	618.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011614, intron 5 of 6)	intron (NM_011614, intron 5 of 6)	4561.0	NM_011614	21944.0	Mm.8983	NM_011614	ENSMUSG00000097328	Tnfsf12	Apo3l|Dr3l|Dr3lg|Tweak	tumor necrosis factor (ligand) superfamily, member 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-152333323-2	chr2	152333223	152333423	+	558.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001083921)	promoter-TSS (NM_001083921)	-684.0	NM_019705	24105.0	Mm.182145	NM_019705	ENSMUSG00000027466	Rbck1	AL033326|HOIL-1|HOIL-1L|UIP28|Ubce7ip3	RanBP-type and C3HC4-type zinc finger containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81351872-2	chr10	81351772	81351972	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1415.0	NM_001163166	15353.0	Mm.38474	NM_010440	ENSMUSG00000020232	Hmg20b	AW610687|BRAF35|Hmgx2|Hmgxb2|Smarce1r	high mobility group 20B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-98792728-4	chr15	98792542	98792742	+	834.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_021279, exon 4 of 4)	exon (NM_021279, exon 4 of 4)	2785.0	NM_021279	22408.0	Mm.1123	NM_021279	ENSMUSG00000022997	Wnt1	Int-1|Wnt-1|sw|swaying	wingless-type MMTV integration site family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-149586364-2	chr4	149586264	149586464	+	997.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290989)	promoter-TSS (NM_001290989)	-104.0	NM_001290989	65945.0	Mm.38993	NM_023051	ENSMUSG00000039953	Clstn1	1810034E21Rik|Cst-1|Cstn1	calsyntenin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84247930-2	chr8	84247804	84248004	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001007571, intron 2 of 2)	PB1D9|SINE|Alu	1857.0	NM_001007571	101966.0	Mm.200723	NM_001007571	ENSMUSG00000019362	D8Ertd738e	AA589584	DNA segment, Chr 8, ERATO Doi 738, expressed	protein-coding	1.27477837487141	1.22578204504748	1.0398618835901	0.677862592715159	0.82766079393095	1.23642340890836	1.42026172584563	0.67932543045962	0.0158063754233319	0.991345902075818	0.998431161219273
Merged-chr6-115883107-2	chr6	115883007	115883207	+	603.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001167763, intron 7 of 28)	intron (NM_001167763, intron 7 of 28)	29579.0	NM_031177	81896.0	Mm.333335	NM_031177	ENSMUSG00000030323	Ift122	C86139|Wdr10|sopb	intraflagellar transport 122	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-20718601-3	chr16	20718504	20718704	+	629.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001356423, exon 1 of 5)	5' UTR (NM_001356423, exon 1 of 5)	427.0	NM_001356423	245841.0	Mm.288730	NM_145632	ENSMUSG00000021018	Polr2h	-	polymerase (RNA) II (DNA directed) polypeptide H	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81045544-4	chr15	81045434	81045634	+	959.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001082536, intron 2 of 13)	intron (NM_001082536, intron 2 of 13)	59513.0	NM_153049	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-116308392-4	chr7	116308340	116308540	+	874.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001305185)	promoter-TSS (NM_001305185)	-64.0	NM_001305185	233765.0	Mm.3741	NM_172743	ENSMUSG00000045659	Plekha7	A430081P20Rik|AI414265	pleckstrin homology domain containing, family A member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-12592731-2	chr6	12592631	12592831	+	701.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164805, intron 1 of 26)	RMER13B|LTR|ERVK	156522.0	NM_001164805	330267.0	Mm.11989	NM_001164805	ENSMUSG00000032625	Thsd7a	Gm837	thrombospondin, type I, domain containing 7A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-145230811-3	chr4	145230700	145230900	+	838.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011610, intron 1 of 9)	intron (NM_011610, intron 1 of 9)	16070.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-29276242-2	chr1	29276142	29276342	+	623.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F|LINE|L1	-145246.0	NR_105760	102465174.0		NR_105760	ENSMUSG00000099257	Mir6342	Gm27268|mmu-mir-6342	microRNA 6342	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-4004184-3	chr6	4004086	4004286	+	617.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_025331, exon 1 of 2)	5' UTR (NM_025331, exon 1 of 2)	199.0	NM_025331	66066.0	Mm.25547	NM_025331	ENSMUSG00000032766	Gng11	0610037B21Rik	guanine nucleotide binding protein (G protein), gamma 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-5073764-2	chr18	5073664	5073864	+	554.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347449, intron 9 of 30)	intron (NM_001347449, intron 9 of 30)	27175.0	NM_001347449	225115.0	Mm.136791	NM_153153	ENSMUSG00000024236	Svil	AU024053|B430302E16Rik	supervillin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27025489-4	chr17	27025384	27025584	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001251881, intron 2 of 6)	intron (NM_001251881, intron 2 of 6)	3143.0	NM_007523	12018.0	Mm.2443	NM_007523	ENSMUSG00000057789	Bak1	Bak|N-BAK1|N-Bak	BCL2-antagonist/killer 1	protein-coding	4.61220438509994	5.15683460096838	4.96490995348234	5.08543003402523	4.24865175601961	5.40108394460416	5.18131100492996	5.10816487048472	0.0868314296734914	0.803716910512292	0.998431161219273
Merged-chr6-87998057-4	chr6	87997931	87998131	+	877.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16348.0	NR_026990	434064.0	Mm.371796	NR_026990	ENSMUSG00000084950	Gm5577	EG434064	predicted gene 5577	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90503647-2	chr2	90503547	90503747	+	766.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	-24473.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-41412885-4	chr3	41412785	41412985	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	80314.0	NR_040385	78706.0	Mm.366094	NR_040385	ENSMUSG00000097639	Platr4	C430002E04Rik	pluripotency associated transcript 4	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46397786-2	chr19	46397686	46397886	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025391, intron 1 of 11)	intron (NM_001025391, intron 1 of 11)	890.0	NM_015752	24069.0	Mm.41210	NM_015752	ENSMUSG00000025231	Sufu	Su(fu)	SUFU negative regulator of hedgehog signaling	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4679177-4	chr16	4679056	4679256	+	978.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030205, intron 1 of 27)	CpG	564.0	NM_030205	78885.0	Mm.325512	NM_030205	ENSMUSG00000039637	Coro7	0610011B16Rik|AW048373|AW556392	coronin 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-73066604-3	chr2	73066484	73066684	+	855.603149	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-86138.0	NM_001018042	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-31123116-4	chr6	31123011	31123211	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110471, intron 3 of 3)	ORR1F|LTR|ERVL-MaLR	-60018.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-72983663-4	chr14	72983560	72983760	+	887.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41943.0	NR_027860	668489.0	Mm.158324	NR_027860		Gm9199	EG668489	glycine cleavage system protein H (aminomethyl carrier) pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81887120-2	chr15	81887020	81887220	+	793.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_080633, intron 1 of 17)	B2_Mm1a|SINE|B2	14657.0	NM_080633	11429.0	Mm.154581	NM_080633	ENSMUSG00000022477	Aco2	Aco-2|Aco3|D10Wsu183e	aconitase 2, mitochondrial	protein-coding	-1.56355737717652	-1.81244775989375	-1.82128546162293	-1.82854501295842	-1.83962066705452	-1.81053259306168	-1.81928479966835	-1.82724555674025	-1.28500227969968	0.715751224811686	1
Merged-chr13-62926661-2	chr13	62926561	62926761	+	716.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38232.0	NM_001289926	72061.0	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-21384131-4	chr19	21384030	21384230	+	842.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	88531.0	NM_010266	14544.0	Mm.45054	NM_010266	ENSMUSG00000058624	Gda	AU015411|AW047581|GAH	guanine deaminase	protein-coding	0.717682647369401	1.12134628281204	0.57934040331783	0.571511637994329	1.27175497304464	0.5916489681281	1.31686082328021	1.15946417181759	1.76562448634757	0.269812417753815	0.772972633288032
Merged-chr18-60801503-2	chr18	60801430	60801630	+	754.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER21C|LTR|ERVL	-2319.0	NM_001042605	16149.0	Mm.439737	NM_010545	ENSMUSG00000024610	Cd74	CLIP|DHLAG|HLADG|Ia-GAMMA|Ii	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	protein-coding	1.38328502769404	1.74970828593512	2.37724423475975	1.20685290945576	2.45480797849132	2.76342421770247	2.28880926004604	1.97046029972191	1.57480861639644	0.111863770824185	0.523751271664787
Merged-chr4-28815504-4	chr4	28815318	28815518	+	890.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010141, intron 1 of 16)	CpG	2273.0	NM_001122889	13841.0	Mm.257266	NM_010141	ENSMUSG00000028289	Epha7	Cek11|Ebk|Ehk3|Hek11|Mdk1	Eph receptor A7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-104232688-2	chr9	104232588	104232788	+	655.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359740, intron 6 of 56)	intron (NM_001359740, intron 6 of 56)	30242.0	NM_001359740	235567.0	Mm.217256	NM_001163026	ENSMUSG00000032560	Dnajc13	D030002L11Rik|Gm1124|RME-8|Rme8|mKIAA0678	DnaJ heat shock protein family (Hsp40) member C13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127660607-2	chr10	127660507	127660707	+	687.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001122895)	TTS (NM_001122895)	6096.0	NM_001122895	17937.0	Mm.336898	NM_008668	ENSMUSG00000025402	Nab2	AI451907	Ngfi-A binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-43655412-4	chr16	43655324	43655524	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146325, intron 3 of 3)	intron (NM_001146325, intron 3 of 3)	8760.0	NM_001146325	100043314.0	Mm.390896	NM_001146325	ENSMUSG00000071552	Tigit	Vstm3	T cell immunoreceptor with Ig and ITIM domains	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-20508113-3	chr1	20508011	20508211	+	932.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153179, intron 34 of 66)	intron (NM_153179, intron 34 of 66)	109946.0	NM_153179	241035.0	Mm.249253	NM_153179	ENSMUSG00000043760	Pkhd1	AI118496|AI182499|FPC|Tigm1	polycystic kidney and hepatic disease 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132575141-2	chr4	132575041	132575241	+	717.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081211, intron 1 of 1)	Charlie1a|DNA|hAT-Charlie	11074.0	NM_001081211	19204.0	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114930464-2	chr11	114930364	114930564	+	862.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_199221, intron 1 of 3)	RSINE1|SINE|B4	3922.0	NM_001347651	217304.0	Mm.185355	NM_199221	ENSMUSG00000063193	Cd300lb	CLM-7|Clm7|Gm253|LMIR5	CD300 molecule like family member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-5777026-4	chr13	5776858	5777058	+	966.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	81134.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-58328946-1	chr11	58328846	58329046	+	600.0	f1_c57bl6.idr	intron (NM_001256520, intron 1 of 2)	URR1A|DNA|hAT-Charlie	1393.0	NM_001256520	319475.0	Mm.72124	NM_178761	ENSMUSG00000049755	Zfp672	4930488P06Rik|4930511N19Rik|Znf672	zinc finger protein 672	protein-coding	0.189967208533661	0.220703353442767	-0.201285975196243	-0.203725673725956	0.115777187822057	-0.197362300751403	-0.200584180508868	-0.203301173092779	-1.39434275234662	0.57101935793426	1
Merged-chr12-12276642-2	chr12	12276542	12276742	+	640.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029758, intron 2 of 12)	(TG)n|Simple_repeat|Simple_repeat	14503.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	-1.84297643846673	-1.8130099360596	-1.82207205372894	-1.6869274651563	-1.84087284540582	-1.81104613735712	-1.82002058892457	-1.6855950118199	0.037684011990387	0.991491645451152	1
Merged-chr16-92403177-3	chr16	92403076	92403276	+	716.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081549, intron 1 of 3)	intron (NM_001081549, intron 1 of 3)	-3098.0	NM_019466	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165873918-4	chr2	165873783	165873983	+	760.604187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252587, intron 2 of 11)	intron (NM_001252587, intron 2 of 11)	4554.0	NM_001291158	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	1.36769217962944	1.02935468584222	3.03381666352718	1.45155740979968	1.38058550697783	2.21918827418136	1.00493672501338	2.44568352299367	-0.266866708106289	0.820940035431649	0.998431161219273
Merged-chr15-79401652-2	chr15	79401552	79401752	+	935.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172608, intron 1 of 8)	L2b|LINE|L2	1267.0	NM_001253817	223693.0	Mm.323358	NM_172608	ENSMUSG00000009035	Tmem184b	2610507A11|4732495E13Rik	transmembrane protein 184b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115054662-3	chr11	115054548	115054748	+	774.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172050, intron 2 of 3)	intron (NM_172050, intron 2 of 3)	-6353.0	NM_199201	382551.0	Mm.424732	NM_199201	ENSMUSG00000069607	Cd300ld3	AY457049|Cd300lh|Clm3|Lmir7|clm-3	CD300 molecule like family member D3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-13005911-2	chr17	13005811	13006011	+	817.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A0-int|LTR|ERVL-MaLR	-1928.0	NM_013671	20656.0	Mm.290876	NM_013671	ENSMUSG00000006818	Sod2	MnSOD|Sod-2	superoxide dismutase 2, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-33148659-2	chr12	33148559	33148759	+	811.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028139, intron 2 of 3)	intron (NM_028139, intron 2 of 3)	973.0	NM_028139	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-147236143-2	chr4	147236043	147236243	+	990.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039209, intron 1 of 2)	L1_Mus3|LINE|L1	60277.0	NM_001039209	195531.0	Mm.270762	NM_001039209	ENSMUSG00000078496	Zfp982	Gm13152	zinc finger protein 982	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-47589989-4	chr9	47589856	47590056	+	920.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	MIRb|SINE|MIR	59604.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	2.28632108132971	1.89260123338962	2.13464822072816	1.94797581637707	2.60033489396742	2.34912710650836	2.15006489435466	2.3171143869587	0.742414710460152	0.38109557745936	0.872814597548498
Merged-chr3-88554260-3	chr3	88554239	88554439	+	854.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033526, intron 1 of 10)	(TC)n|Simple_repeat|Simple_repeat	623.0	NM_033526	94232.0	Mm.303059	NM_033526	ENSMUSG00000008604	Ubqln4	A1Up|A1u|AI663987|CIP75|UBIN	ubiquilin 4	protein-coding	4.32831628431516	4.2613747208423	3.60637842892528	3.65528979802187	4.13420293012128	3.12786625392803	3.01684700370298	2.91640354418499	-0.850743064096917	0.122413246420065	0.548442540556465
Merged-chr10-79738525-2	chr10	79738425	79738625	+	613.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172551, intron 11 of 20)	intron (NM_172551, intron 11 of 20)	8056.0	NM_172551	216151.0	Mm.39001	NM_172551	ENSMUSG00000020329	Polrmt	1110018N15Rik|4932416K13	polymerase (RNA) mitochondrial (DNA directed)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-60223622-2	chr11	60223522	60223722	+	636.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1041.0	NM_001358315	20787.0	Mm.278701	NM_011480	ENSMUSG00000020538	Srebf1	ADD1|SREBP1|bHLHd1	sterol regulatory element binding transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-10543123-4	chr16	10543010	10543210	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021428)	promoter-TSS (NM_021428)	-56.0	NM_021428	58239.0	Mm.353006	NM_021428	ENSMUSG00000038055	Dexi	1810029J14Rik|AI836170|AW413143|D16Bwg0586e|Myle	dexamethasone-induced transcript	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-50607603-2	chr9	50607503	50607703	+	722.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001134902, exon 7 of 7)	exon (NM_001134902, exon 7 of 7)	3702.0	NM_013897	30057.0	Mm.335149	NM_013897	ENSMUSG00000039016	Timm8b	Tim8b	translocase of inner mitochondrial membrane 8B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-6390590-2	chr11	6390490	6390690	+	723.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4535.0	NM_001005867	52915.0	Mm.1144	NM_028601	ENSMUSG00000041164	Zmiz2	Zimp7	zinc finger, MIZ-type containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56158470-2	chr17	56158370	56158570	+	544.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4021.0	NM_025566	66443.0	Mm.2312	NM_025566	ENSMUSG00000044469	Tnfaip8l1	2600017J23Rik|TIPE1	tumor necrosis factor, alpha-induced protein 8-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-184590844-4	chr1	184590755	184590955	+	980.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33164.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-41830225-2	chr2	41830125	41830325	+	673.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_053011, intron 3 of 90)	intron (NM_053011, intron 3 of 90)	617343.0	NR_105754	102465171.0		NR_105754	ENSMUSG00000098660	Mir6336	Gm27584|mmu-mir-6336	microRNA 6336	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-63109466-4	chr9	63109363	63109563	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37517.0	NM_172446	207667.0	Mm.36349	NM_172446	ENSMUSG00000022245	Skor1	AV273001|C230094B15Rik|Corl1|Lbxcor1	SKI family transcriptional corepressor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-68491681-2	chr14	68491581	68491781	+	552.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TTAGGG)n|Simple_repeat|Simple_repeat	42008.0	NM_007402	11500.0	Mm.261495	NM_007402	ENSMUSG00000022056	Adam7	ADAM 7|EAP1|EAPI	a disintegrin and metallopeptidase domain 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-93274380-3	chr15	93274288	93274488	+	755.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346785, intron 1 of 7)	intron (NM_001346785, intron 1 of 7)	791.0	NM_001357006	223827.0	Mm.22819	NM_001033275	ENSMUSG00000036197	Gxylt1	Glt8d3|Gm1228|Gm87	glucoside xylosyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-67384420-2	chr17	67384320	67384520	+	709.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29929.0	NM_001357625	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-48625662-4	chr13	48625558	48625758	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001301781)	promoter-TSS (NM_001301781)	14.0	NM_207232	218232.0	Mm.315089	NM_207232	ENSMUSG00000038042	Ptpdc1	AI843923|AW456874|Naa-1|Ptpcd1	protein tyrosine phosphatase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-128796589-4	chr4	128796507	128796707	+	831.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081098, intron 1 of 8)	intron (NM_001081098, intron 1 of 8)	9505.0	NM_001081098	230761.0	Mm.22616	NM_001081098	ENSMUSG00000028799	Zfp362	-	zinc finger protein 362	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78773533-4	chr15	78773436	78773636	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008595)	promoter-TSS (NM_008595)	-91.0	NM_008595	17305.0	Mm.149235	NM_008595	ENSMUSG00000018169	Mfng	AW546563	MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	4.06176751678904	3.73572477363519	3.12996581306879	4.16917513302686	3.63556830992153	3.2678477283995	3.92655861902971	3.26665537976995	-0.41611426847406	0.426216893813041	0.902023751857747
Merged-chr1-152841390-2	chr1	152841290	152841490	+	967.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001005507, intron 18 of 21)	intron (NM_001005507, intron 18 of 21)	41237.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-157201644-4	chr2	157201556	157201756	+	997.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011249, intron 1 of 21)	intron (NM_011249, intron 1 of 21)	2878.0	NM_011249	19650.0	Mm.244671	NM_011249	ENSMUSG00000027641	Rbl1	AW547426|PRB1|p107	RB transcriptional corepressor like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-59266269-4	chr10	59266174	59266374	+	993.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C2|LTR|ERVK	44352.0	NM_172939	268301.0	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-68277016-4	chr10	68276920	68277120	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023598, intron 2 of 9)	CpG	1706.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	3.26729664963083	4.40442693155499	3.99270821814572	3.75624535494297	3.78019631933432	2.66879615074235	4.52623582638289	3.4690743500674	-0.183811285744819	0.742834949885457	0.998431161219273
Merged-chr7-25395714-4	chr7	25395647	25395847	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_073027, exon 2 of 6)	non-coding (NR_073027, exon 2 of 6)	240.0	NM_010719	16890.0	Mm.158548	NM_010719	ENSMUSG00000003123	Lipe	4933403G17Rik|HSL	lipase, hormone sensitive	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-58158379-2	chr2	58158279	58158479	+	789.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_139200, intron 1 of 7)	intron (NM_139200, intron 1 of 7)	1743.0	NM_139200	227929.0	Mm.273905	NM_139200	ENSMUSG00000026832	Cytip	A130053M09Rik|AI462064|C80816|Cbp|Cybr|Pscdbp	cytohesin 1 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-84098024-2	chr17	84097924	84098124	+	802.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19364.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-51429238-1	chr12	51429138	51429338	+	811.0	f0_balb.idr	intron (NM_029825, intron 17 of 24)	intron (NM_029825, intron 17 of 24)	51725.0	NM_029825	76983.0	Mm.216511	NM_029825	ENSMUSG00000020952	Scfd1	3110021P21Rik|RA410|STXBP1L2	Sec1 family domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-112651764-2	chr12	112651664	112651864	+	569.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6936.0	NM_013929	30954.0	Mm.289812	NM_013929	ENSMUSG00000064326	Siva1	CD27bp|Siva	SIVA1, apoptosis-inducing factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-37365662-3	chr13	37365564	37365764	+	853.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010745, intron 1 of 4)	RMER15|LTR|ERVL	20319.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-47230124-2	chr13	47230005	47230205	+	811.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_146042, intron 4 of 7)	intron (NM_146042, intron 4 of 7)	36102.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	1.51448525974859	1.84567350269224	1.77238383760233	0.822076272399672	1.15842169413395	1.86182493517926	0.839506847262496	0.82447223002302	-0.986656352587732	0.475871641729711	0.927406040011522
Merged-chr13-81655488-3	chr13	81655423	81655623	+	771.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2283.0	NM_030257	80289.0	Mm.259969	NM_030257	ENSMUSG00000035840	Lysmd3	1110030H10Rik|BC003322	LysM, putative peptidoglycan-binding, domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-63561520-2	chr4	63561420	63561620	+	850.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144905, intron 2 of 9)	B1F|SINE|Alu	1293.0	NM_144905	230279.0	Mm.41523	NM_144905	ENSMUSG00000045917	Tmem268	6330416G13Rik|AW492431|bM230C2.2	transmembrane protein 268	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-164804318-2	chr2	164804218	164804418	+	812.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178375)	promoter-TSS (NM_178375)	563.0	NM_133240	170789.0	Mm.277878	NM_133240	ENSMUSG00000017307	Acot8	PTE-2|Pte1	acyl-CoA thioesterase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21225402-3	chr9	21225246	21225446	+	625.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13986.0	NM_016679	50868.0	Mm.248266	NM_016679	ENSMUSG00000003308	Keap1	INRF2|mKIAA0132	kelch-like ECH-associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101986933-2	chr11	101986833	101987033	+	612.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029287)	promoter-TSS (NM_029287)	-123.0	NM_029287	75437.0	Mm.108632	NM_029287	ENSMUSG00000010841	1700006E09Rik	Cfap97d1	RIKEN cDNA 1700006E09 gene	protein-coding	0.356476270713351	2.29618436416536	0.933479463519256	0.388269957733366	0.361355853150436	2.08345114866179	0.411408743144204	0.391485218753712	-0.525655981536333	0.872322487717274	0.998431161219273
Merged-chr16-33906377-3	chr16	33906292	33906492	+	952.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 8 of 14)	intron (NM_001145884, intron 8 of 14)	60646.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-32554193-4	chr11	32554108	32554308	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 1 of 18)	URR1B|DNA|hAT-Charlie	20942.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46321890-1	chr19	46321790	46321990	+	560.0	f0_c57.idr	intron (NM_001347454, intron 6 of 17)	intron (NM_001347454, intron 6 of 17)	4976.0	NM_001347454	73728.0	Mm.268532	NM_028627	ENSMUSG00000037126	Psd	1110007H17Rik|A930015K15|Efa6|Efa6a|Psdl|mKIAA2011	pleckstrin and Sec7 domain containing	protein-coding	1.75450684987621	1.04430362266765	2.7355417869551	1.73398127347343	1.51931288996502	1.87284019458151	1.65532879433004	1.00354286189247	-1.17635153749313	0.310718339215912	0.811846392402549
Merged-chr7-99161100-2	chr7	99160993	99161193	+	749.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026384, intron 4 of 7)	intron (NM_026384, intron 4 of 7)	-19949.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	-0.723846613167693	-0.236523553670226	-0.717614941212578	-0.561171436361083	-0.723270286528476	-0.713869780689752	-0.716942188268015	-0.421909933151057	-1.11977474534564	0.687669952934154	1
Merged-chr10-22186586-3	chr10	22186448	22186648	+	738.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009018, intron 6 of 6)	intron (NM_009018, intron 6 of 6)	12646.0	NM_009018	19370.0	Mm.439724	NM_009018		Raet1c	RAE-1gamma	retinoic acid early transcript gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-119406244-3	chr13	119406134	119406334	+	851.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001308506, intron 1 of 16)	intron (NM_001308506, intron 1 of 16)	2777.0	NM_008710	18115.0	Mm.132584	NM_008710	ENSMUSG00000116207	Nnt	4930423F13Rik|AI323702|BB168308	nicotinamide nucleotide transhydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-96963095-2	chr11	96963001	96963201	+	925.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030220, intron 2 of 6)	B4A|SINE|B4	14587.0	NM_030220	78912.0	Mm.491183	NM_030220	ENSMUSG00000018678	Sp2	4930480I16Rik|mKIAA0048	Sp2 transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-63133797-2	chr14	63133697	63133897	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007798, intron 2 of 9)	intron (NM_007798, intron 2 of 9)	11335.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-66298642-2	chr5	66298542	66298742	+	779.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_027602)	TTS (NM_027602)	37801.0	NM_027602	70918.0	Mm.23166	NM_027602	ENSMUSG00000029206	Nsun7	4921525L17Rik	NOL1/NOP2/Sun domain family, member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-82471929-2	chr18	82471829	82472029	+	811.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1G3|LTR|ERVL-MaLR	-3194.0	NM_001025245	17196.0	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-92435152-2	chr2	92435052	92435252	+	662.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1083.0	NM_009963	12953.0	Mm.254181	NM_009963	ENSMUSG00000068742	Cry2	AV006279|D130054K12Rik	cryptochrome 2 (photolyase-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-13968101-4	chr10	13967954	13968154	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358782, intron 1 of 9)	intron (NM_001358782, intron 1 of 9)	1675.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-66852892-4	chr10	66852809	66853009	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	67475.0	NR_138560	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70020057-2	chr11	70019957	70020157	+	776.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_007864, intron 1 of 19)	intron (NM_007864, intron 1 of 19)	1452.0	NM_007864	13385.0	Mm.27256	NM_007864	ENSMUSG00000020886	Dlg4	Dlgh4|PSD-95|PSD95|SAP90|SAP90A	discs large MAGUK scaffold protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-34342825-1	chr15	34342725	34342925	+	827.0	f0_balb.idr	intron (NM_001358780, intron 2 of 18)	intron (NM_001358780, intron 2 of 18)	15047.0	NM_001256161	77358.0	Mm.402759	NM_001256161	ENSMUSG00000094447	9430069I07Rik	-	RIKEN cDNA 9430069I07 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-72818819-2	chr15	72818719	72818919	+	630.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164641, intron 17 of 17)	intron (NM_001164641, intron 17 of 17)	-8495.0	NR_002864	353342.0	Mm.440245	NR_002864	ENSMUSG00000106847	Peg13	-	paternally expressed 13	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-135683708-2	chr1	135683608	135683808	+	670.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F1|SINE|Alu	-36355.0	NM_001360782	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-96565547-1	chr10	96565447	96565647	+	565.0	f1_balb.idr	Intergenic	L1MC4|LINE|L1	-51454.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	0.138079149245307	0.759329331827429	0.150029099977615	0.445103205295956	0.139187806509344	0.157173166700821	0.478785041337924	0.677582419690304	-0.114897621120647	0.954600928159486	1
Merged-chr19-45176486-3	chr19	45176390	45176590	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25775.0	NM_021901	21908.0	Mm.391203	NM_021901	ENSMUSG00000025215	Tlx1	Hox-11|Hox11|Tlx-1	T cell leukemia, homeobox 1	protein-coding	4.07161946311441	2.78954347078564	3.88512074470792	3.92217775930722	2.1803434254292	1.50246109466902	2.70769043866701	1.38333907330988	-2.9896425964106	0.000102190787390987	0.00311716542487388
Merged-chr5-99252948-4	chr5	99252841	99253041	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145839)	promoter-TSS (NM_145839)	-14.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-77265560-2	chr10	77265460	77265660	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030262, intron 5 of 8)	intron (NM_030262, intron 5 of 8)	6260.0	NM_030262	80294.0	Mm.203556	NM_030262	ENSMUSG00000020260	Pofut2	2310011G23Rik|AI256847|BC003494|C21orf80|FUT13	protein O-fucosyltransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69695162-2	chr11	69695062	69695262	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011614, intron 2 of 6)	intron (NM_011614, intron 2 of 6)	936.0	NM_011614	21944.0	Mm.8983	NM_011614	ENSMUSG00000097328	Tnfsf12	Apo3l|Dr3l|Dr3lg|Tweak	tumor necrosis factor (ligand) superfamily, member 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-62770792-4	chr1	62770671	62770871	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077404, intron 11 of 16)	intron (NM_001077404, intron 11 of 16)	23961.0	NR_040601	74992.0	Mm.401979	NR_040601		4930487H11Rik	-	RIKEN cDNA 4930487H11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-35633190-2	chr9	35633090	35633290	+	762.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15012.0	NM_001167592	100312956.0	Mm.475850	NM_001167592	ENSMUSG00000094995	Pate3	Gm17365|Pate-dj	prostate and testis expressed 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-32010993-1	chr4	32010893	32011093	+	831.0	f0_balb.idr	intron (NM_009316, intron 14 of 16)	intron (NM_009316, intron 14 of 16)	46886.0	NM_172688	26409.0	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-31600300-3	chr10	31600195	31600395	+	996.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146349, intron 1 of 5)	intron (NM_001146349, intron 1 of 5)	9430.0	NM_001146349	268291.0	Mm.295212	NM_001146349	ENSMUSG00000063760	Rnf217	AU016819|Ibrdc1	ring finger protein 217	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76380409-4	chr15	76380309	76380509	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175457)	promoter-TSS (NM_175457)	-104.0	NM_175457	223658.0	Mm.123240	NM_175457	ENSMUSG00000022558	Mroh1	D330001F17Rik|Heatr7a	maestro heat-like repeat family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-3679592-2	chr8	3679492	3679692	+	760.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_025701, exon 2 of 2)	3' UTR (NM_025701, exon 2 of 2)	3115.0	NM_025701	66682.0	Mm.29090	NM_025701	ENSMUSG00000040236	Trappc5	4021401A16Rik|TRS31	trafficking protein particle complex 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-137898647-1	chr2	137898547	137898747	+	650.0	f0_balb.idr	Intergenic	MLT1H|LTR|ERVL-MaLR	-357937.0	NM_001025431	228662.0	Mm.153405	NM_145534	ENSMUSG00000062098	Btbd3	mKIAA0952	BTB (POZ) domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-10961722-2	chr16	10961622	10961822	+	634.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019980, intron 3 of 3)	ID_B1|SINE|B4	31399.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25619385-4	chr7	25619271	25619471	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025504)	promoter-TSS (NM_025504)	-43.0	NM_001290487	66349.0	Mm.159956	NM_025504	ENSMUSG00000057229	Dmac2	2310004L02Rik|Atp5sl|C030044E10Rik	distal membrane arm assembly complex 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-89254476-2	chr6	89254376	89254576	+	588.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31249.0	NR_131021	75131.0	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	Gm44205	RIKEN cDNA 4930512J16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36801816-4	chr18	36801715	36801915	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027885)	promoter-TSS (NR_027885)	52.0	NR_027885	378472.0	Mm.482379	NR_027885		Vaultrc5	Gm22653|Mvg1	vault RNA component 5	ncRNA	6.3387487652898	6.97038187653972	6.74836639131014	7.04762510152446	6.54631786658657	6.24499147813455	6.9316254318951	6.81012499272062	-0.14707231836625	0.495825314313236	0.93644329748088
Merged-chr9-35278080-4	chr9	35277978	35278178	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-3027.0	NR_040715	71133.0	Mm.158577	NR_040715	ENSMUSG00000111746	4933422A05Rik	-	RIKEN cDNA 4933422A05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-60481916-4	chr3	60481831	60482031	+	908.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253713, intron 2 of 9)	intron (NM_001253713, intron 2 of 9)	9101.0	NM_001253713	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-119378693-2	chr6	119378593	119378793	+	630.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_197985, intron 1 of 7)	L1MB4|LINE|L1	10041.0	NM_001355692	68465.0	Mm.291826	NM_197985	ENSMUSG00000030168	Adipor2	1110001I14Rik|ADCR2|AI115388|AW554121|D6Ucla1e|Paqr2	adiponectin receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-11770386-4	chr19	11770272	11770472	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025606)	promoter-TSS (NM_025606)	-43.0	NM_025606	94063.0	Mm.203928	NM_025606	ENSMUSG00000024683	Mrpl16	2310039D06Rik	mitochondrial ribosomal protein L16	protein-coding	2.71664376606393	2.72549327929642	2.37210611705202	2.94486342184251	1.89581278778799	2.61646868376067	2.87004960798771	3.24648815879705	0.0878768219144041	0.906688791321821	0.998431161219273
Merged-chr15-25659336-2	chr15	25659236	25659436	+	590.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019472, intron 1 of 40)	intron (NM_019472, intron 1 of 40)	36786.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-30550545-4	chr16	30550444	30550644	+	979.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172614)	promoter-TSS (NM_172614)	34.0	NM_172614	224090.0	Mm.241459	NM_172614	ENSMUSG00000022537	Tmem44	1700007N03Rik|9330161C17Rik|B230220N21	transmembrane protein 44	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-112785185-4	chr13	112785084	112785284	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15593.0	NM_008903	19012.0	Mm.291029	NM_008247	ENSMUSG00000021759	Plpp1	Hic53|Hpic53|LPP-1|LPP1|PAP-2a|PAP2-alpha|PAP2a|Ppap2a|mPAP	phospholipid phosphatase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-88815811-2	chr6	88815711	88815911	+	589.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166249, intron 5 of 7)	intron (NM_001166249, intron 5 of 7)	26124.0	NM_001362152	80283.0	Mm.166858	NM_030251	ENSMUSG00000030083	Abtb1	AI847549|BC003234|BPOZ|EF1ABP	ankyrin repeat and BTB (POZ) domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84708460-4	chr8	84708250	84708450	+	733.770813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001081981, exon 11 of 11)	3' UTR (NM_001081981, exon 11 of 11)	6893.0	NM_008535	17095.0	Mm.4925	NM_008535	ENSMUSG00000034041	Lyl1	Lyl-1|bHLHa18	lymphoblastomic leukemia 1	protein-coding	1.42323766814989	1.0571870857551	1.77293353883494	1.61460758084774	1.73740555159256	1.06000165960246	1.23476511737603	2.16133203453064	0.549429272971989	0.661103177409611	0.990861719256097
Merged-chr15-58732197-4	chr15	58732103	58732303	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	91224.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-84583200-2	chr6	84583100	84583300	+	896.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177713, intron 3 of 6)	intron (NM_001177713, intron 3 of 6)	10610.0	NM_175475	232174.0	Mm.255246	NM_175475	ENSMUSG00000063415	Cyp26b1	CP26|P450RAI-2	cytochrome P450, family 26, subfamily b, polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-151994997-3	chr2	151994900	151995100	+	853.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1511.0	NM_027172	69698.0	Mm.258262	NM_027172	ENSMUSG00000027463	Slc52a3	2310046K01Rik|RFT2	solute carrier protein family 52, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-17247546-4	chr19	17247448	17247648	+	798.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	91957.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	4.23137725919159	4.00260491969741	4.83831837168854	3.95408084295766	4.04815420088012	3.28883777941365	2.90060597862542	2.79933240033864	-1.31043682680267	0.0131884437463085	0.132525082134179
Merged-chr19-45006550-4	chr19	45006465	45006665	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153796)	promoter-TSS (NM_153796)	7.0	NM_153796	226153.0	Mm.105585	NM_153796	ENSMUSG00000025209	Twnk	D19Ertd626e|PEO|Peo1|Twinl	twinkle mtDNA helicase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131276003-2	chr1	131275903	131276103	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019777, intron 3 of 21)	intron (NM_019777, intron 3 of 21)	3560.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-93650424-2	chr17	93650324	93650524	+	928.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus4|LINE|L1	451256.0	NM_009625	11516.0	Mm.3407	NM_009625	ENSMUSG00000024256	Adcyap1	PACAP	adenylate cyclase activating polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-136142921-4	chr4	136142845	136143045	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008321)	promoter-TSS (NM_008321)	-877.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111670943-4	chr12	111670879	111671079	+	997.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_021273, exon 5 of 8)	exon (NM_021273, exon 5 of 8)	1359.0	NM_021273	12709.0	Mm.16831	NM_021273	ENSMUSG00000001270	Ckb	B-CK|Bck|CPK-B|Ck-3|Ck3|Ckbb	creatine kinase, brain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28168856-4	chr7	28168742	28168942	+	976.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007991)	promoter-TSS (NM_007991)	-906.0	NM_007991	14113.0	Mm.4595	NM_007991	ENSMUSG00000046865	Fbl	AL022665|FIB|FLRN|RNU3IP1	fibrillarin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-60957471-2	chr10	60957371	60957571	+	581.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3252.0	NR_130327	100316671.0		NR_130327	ENSMUSG00000080526	Mir466j	Mirn466j|mmu-mir-466j	microRNA 466j	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-86712067-2	chr5	86711967	86712167	+	549.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172880, intron 8 of 9)	Lx5c|LINE|L1	33740.0	NM_172880	243084.0	Mm.130801	NM_172880	ENSMUSG00000054537	Tmprss11e	A030012E10|AY787860|DESC1|TTSP	transmembrane protease, serine 11e	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-135144716-1	chr1	135144616	135144816	+	544.0	f1_c57bl6.idr	3' UTR (NM_001356382, exon 10 of 10)	3' UTR (NM_001356382, exon 10 of 10)	-2118.0	NM_026823	68724.0	Mm.174998	NM_026823	ENSMUSG00000026426	Arl8a	1110033P22Rik|Arl10b|gie2	ADP-ribosylation factor-like 8A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-39265274-4	chr18	39265167	39265367	+	861.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361073, intron 17 of 21)	intron (NM_001361073, intron 17 of 21)	221978.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-84735697-2	chr2	84735597	84735797	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001005342, intron 1 of 4)	intron (NM_001005342, intron 1 of 4)	1493.0	NM_001005342	241525.0	Mm.486398	NM_001005342	ENSMUSG00000034059	Ypel4	-	yippee like 4	protein-coding	-0.388363130735623	-0.523283331828341	-0.527257747241634	-0.530325436996116	0.275995787059301	-0.522387706766265	-0.340653838596572	-0.52978943590171	2.68503138667297	0.296766247123491	1
Merged-chr10-102079297-2	chr10	102079197	102079397	+	749.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205098, intron 3 of 7)	intron (NM_001205098, intron 3 of 7)	-79561.0	NM_001162368	67569.0	Mm.25252	NM_026243	ENSMUSG00000019888	Mgat4c	9130411I17Rik|GntIVh	MGAT4 family, member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-52565565-2	chr18	52565465	52565665	+	699.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-35698.0	NM_001286182	16948.0	Mm.172	NM_010728	ENSMUSG00000024529	Lox	AI893619|TSC-160|rrg	lysyl oxidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-29891589-2	chr2	29891489	29891689	+	973.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355136, intron 2 of 21)	intron (NM_001355136, intron 2 of 21)	1526.0	NM_013615	18286.0	Mm.330116	NM_013615	ENSMUSG00000026790	Odf2	AI848335|MMTEST29	outer dense fiber of sperm tails 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-38012315-4	chr1	38012200	38012400	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198303, intron 1 of 23)	intron (NM_198303, intron 1 of 23)	14290.0	NM_198303	226982.0	Mm.260943	NM_198303	ENSMUSG00000026083	Eif5b	A030003E17Rik|BC018347|IF2	eukaryotic translation initiation factor 5B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120346582-4	chr11	120346484	120346684	+	806.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_105900)	TTS (NR_105900)	829.0	NR_105900	102465564.0		NR_105900	ENSMUSG00000098955	Mir6935	Gm27344|mmu-mir-6935	microRNA 6935	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-32466613-3	chr9	32466551	32466751	+	943.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008026, intron 2 of 8)	intron (NM_008026, intron 2 of 8)	72666.0	NM_001168354	56379.0	Mm.390168	NM_019659	ENSMUSG00000041248	Kcnj1	Kir1.1|ROMK|Romk2	potassium inwardly-rectifying channel, subfamily J, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-3909040-4	chr16	3908964	3909164	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029738)	promoter-TSS (NM_029738)	55.0	NM_029738	76779.0	Mm.458921	NM_029738	ENSMUSG00000014232	Cluap1	2310030D15Rik|2610111M03Rik	clusterin associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120679658-1	chr8	120679558	120679758	+	547.0	f1_c57bl6.idr	Intergenic	Intergenic	11338.0	NM_001293559	12857.0	Mm.386758	NM_009941	ENSMUSG00000031818	Cox4i1	AL024441|COX|COX IV-1|COXIV|Cox4|Cox4a|IV-1	cytochrome c oxidase subunit 4I1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19501135-4	chr7	19501036	19501236	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M5|LINE|L1	7195.0	NM_177692	232946.0	Mm.64557	NM_177692	ENSMUSG00000057667	Bloc1s3	BC043666|Blos3|E230011O18|rp	biogenesis of lysosomal organelles complex-1, subunit 3	protein-coding	-1.17367364971587	-1.14665061133654	-1.15856004380685	-1.16834280623128	-1.17310571790619	-1.14406978763884	-0.42938571406771	-1.16659169643457	2.89727187181404	0.396361616615464	1
Merged-chr13-84022694-2	chr13	84022594	84022794	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus1|LINE|L1	42080.0	NR_131220	553095.0	Mm.39702	NR_131220	ENSMUSG00000098087	Gm17750	-	predicted gene, 17750	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-142445050-2	chr5	142444950	142445150	+	980.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_199068, intron 2 of 8)	intron (NM_199068, intron 2 of 8)	-18881.0	NM_172725	231855.0	Mm.78250	NM_172725	ENSMUSG00000039623	Ap5z1	C330006K01Rik	adaptor-related protein complex 5, zeta 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-31963955-4	chr4	31963867	31964067	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172688)	promoter-TSS (NM_172688)	-140.0	NM_009316	26409.0	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding	5.69365185265984	5.60720857363233	6.42595546056718	5.98102900664448	6.04568092230626	6.2438563851567	6.41740899619331	6.57556882458482	0.403176132235292	0.101660744693023	0.495823420661335
Merged-chr12-75818794-3	chr12	75818700	75818900	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005510, intron 1 of 115)	CpG	482.0	NM_001005510	319565.0	Mm.26652	NM_001005510	ENSMUSG00000063450	Syne2	6820443O06Rik|AW546258|Cpfl8|D12Ertd777e|KASH2|NUA|Nesp2g|dice|mKIAA1011	spectrin repeat containing, nuclear envelope 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-79617511-3	chr12	79617429	79617629	+	805.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	307204.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-40681906-2	chr14	40681806	40682006	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14|LTR|ERV1	211059.0	NM_177816	328381.0	Mm.235694	NM_177816	ENSMUSG00000037833	Sh2d4b	A430109M18Rik|D030001E08	SH2 domain containing 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-77921858-2	chr9	77921758	77921958	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134255, intron 1 of 7)	intron (NM_134255, intron 1 of 7)	4493.0	NM_134255	68801.0	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-87450004-2	chr11	87449904	87450104	+	566.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199293, intron 2 of 30)	B1_Mus2|SINE|Alu	22413.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-43327955-4	chr17	43327874	43328074	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-32457.0	NM_001357332	224792.0	Mm.23478	NM_001081178	ENSMUSG00000056492	Adgrf5	8430401C09Rik|9330185D23|AI528491|Gpr116|mKIAA0758	adhesion G protein-coupled receptor F5	protein-coding	3.68186761706122	4.29961398849091	4.27301843732565	4.21213840609128	3.77368782700836	3.46175515947212	4.30369364504528	3.33758475545832	-0.498145091116298	0.294617876874438	0.798191705447
Merged-chr3-101616015-3	chr3	101615903	101616103	+	684.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11296.0	NM_144900	11928.0	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding	-2.18243820993087	-2.15538464093652	-2.16356586349869	-2.17028616330028	-2.18053909940952	-2.15361173587851	-2.16171381403791	-2.0403552525549	0.759018020146679	0.829933115115583	1
Merged-chr8-110950491-1	chr8	110950391	110950591	+	588.0	f0_balb.idr	intron (NM_009179, intron 1 of 6)	intron (NM_009179, intron 1 of 6)	30626.0	NM_009179	20444.0	Mm.200388	NM_009179	ENSMUSG00000031749	St3gal2	AI429591|AW822065|ST3GalII|Siat5	ST3 beta-galactoside alpha-2,3-sialyltransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-11002653-2	chr16	11002553	11002753	+	677.966675	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6245.0	NR_040518	100043147.0	Mm.489001	NR_040518	ENSMUSG00000097056	Gm4262	-	predicted gene 4262	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-45032044-3	chr19	45031949	45032149	+	881.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195265, intron 10 of 15)	intron (NM_001195265, intron 10 of 15)	13723.0	NM_001195265	100503041.0	Mm.329877	NM_177605	ENSMUSG00000074818	Pdzd7	9130207N01|EG435601|Pdzk7	PDZ domain containing 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-92832616-4	chr7	92832520	92832720	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029494, intron 4 of 4)	Lx6|LINE|L1	41627.0	NM_001355126	74041.0	Mm.26468	NM_028729	ENSMUSG00000030641	Ddias	4632434I11Rik|noxin	DNA damage-induced apoptosis suppressor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-29634250-2	chr2	29634150	29634350	+	685.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_054050, intron 1 of 23)	intron (NM_054050, intron 1 of 23)	14530.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-62715174-2	chr1	62715074	62715274	+	737.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077404, intron 1 of 16)	B3|SINE|B2	11857.0	NM_001077407	18187.0	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-56075427-4	chr16	56075322	56075522	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025483)	promoter-TSS (NM_025483)	18.0	NM_001003973	66315.0	Mm.255784	NM_025483	ENSMUSG00000052917	Senp7	2410152H17Rik|2810413I22Rik|2900036C23Rik|6030449K19Rik|AI790676	SUMO1/sentrin specific peptidase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-32607766-3	chr16	32607667	32607867	+	902.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	C-rich|Low_complexity|Low_complexity	-1129.0	NM_011638	22042.0	Mm.28683	NM_011638	ENSMUSG00000022797	Tfrc	2610028K12Rik|CD71|E430033M20Rik|Mtvr1|TFR|TFR1|TR|Trfr|p90	transferrin receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-14523833-4	chr9	14523741	14523941	+	909.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23222.0	NM_023153	66070.0	Mm.245938	NM_023153	ENSMUSG00000004096	Cwc15	0610040D20Rik|2900052N06Rik|Ed1|c11orf5|mED1	CWC15 spliceosome-associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-104244430-4	chr7	104244330	104244530	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357679)	promoter-TSS (NM_001357679)	-27.0	NM_001357679	94094.0	Mm.326945	NM_030684	ENSMUSG00000056144	Trim34a	Trim34|Trim34-1	tripartite motif-containing 34A	protein-coding	5.15761269007447	4.90383854182677	5.35259365284682	5.31070140554872	4.96376652753449	5.5752510100412	5.35759028836492	5.46876740627686	0.183794023727635	0.533806812518292	0.952266905421651
Merged-chr3-9684125-2	chr3	9684025	9684225	+	879.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-74040.0	NM_133218	170753.0	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-62007624-4	chr11	62007625	62007825	+	933.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310526, intron 1 of 7)	intron (NM_001310526, intron 1 of 7)	50962.0	NM_001310526	432572.0	Mm.438022	NM_001029936	ENSMUSG00000042331	Specc1	2810012G08Rik|B230396K10Rik|Cytsb	sperm antigen with calponin homology and coiled-coil domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-34434110-5	chr1	34433976	34434176	+	920.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_039562)	promoter-TSS (NR_039562)	-877.0	NR_039562	100628580.0		NR_039562	ENSMUSG00000092852	Mir5103	mir-5103|mmu-mir-5103|mu-mir-5103	microRNA 5103	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-128235553-2	chr7	128235453	128235653	+	776.25	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177001, exon 1 of 1)	3' UTR (NM_177001, exon 1 of 1)	-1804.0	NM_146205	233912.0	Mm.475117	NM_146205	ENSMUSG00000042178	Armc5	AW049683|BC032200	armadillo repeat containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-138962600-7	chr1	138962510	138962710	+	998.555542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1099.0	NM_001166501	329260.0	Mm.337604	NM_181347	ENSMUSG00000056268	Dennd1b	4632404N19Rik|4930467M19Rik|6820401H01Rik|F730008N07Rik	DENN/MADD domain containing 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-85506490-4	chr11	85506398	85506598	+	877.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138681, intron 15 of 25)	B1_Mur4|SINE|Alu	153334.0	NM_001166643	192197.0	Mm.209989	NM_138681	ENSMUSG00000059439	Bcas3	1500019F07Rik|2610028P08Rik|AU021018|BC028339|K20D4|rudhira	breast carcinoma amplified sequence 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-66212722-1	chr7	66212622	66212822	+	547.0	f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	103207.0	NM_001081163	269941.0	Mm.333916	NM_001081163	ENSMUSG00000032640	Chsy1	mKIAA0990	chondroitin sulfate synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-120149531-2	chr10	120149431	120149631	+	809.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359184, intron 8 of 11)	intron (NM_001359184, intron 8 of 11)	-36566.0	NM_080446	117599.0	Mm.214703	NM_080446	ENSMUSG00000020228	Helb	AI447783|D10Ertd664e	helicase (DNA) B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-5290922-2	chr11	5290822	5291022	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080924, intron 2 of 8)	intron (NM_001080924, intron 2 of 8)	-29312.0	NM_032396	84035.0	Mm.209989	NM_032396	ENSMUSG00000020393	Kremen1	AV002070|Kremen|Krm1	kringle containing transmembrane protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-63178220-2	chr1	63178120	63178320	+	851.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028558)	promoter-TSS (NR_028558)	-803.0	NR_028558	100217464.0	Mm.484706	NR_028558	ENSMUSG00000064602	Snora41	MBI-83	small nucleolar RNA, H/ACA box 41	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-14082580-4	chr10	14082447	14082647	+	689.758301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010437, intron 2 of 8)	LTR88b|LTR|Gypsy?	116168.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135918364-2	chr4	135918264	135918464	+	668.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009924, exon 2 of 2)	3' UTR (NM_009924, exon 2 of 2)	-2362.0	NM_024243	71665.0	Mm.439940	NM_024243	ENSMUSG00000028673	Fuca1	0610006A03Rik|9530055J05Rik|Afuc|Fuca	fucosidase, alpha-L- 1, tissue	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-78525776-2	chr9	78525676	78525876	+	667.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR51A_Mm|LTR|ERVK?	-44052.0	NM_010106	13627.0	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-70154621-2	chr10	70154521	70154721	+	562.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111121, intron 2 of 8)	intron (NM_001111121, intron 2 of 8)	-50043.0	NM_001304739	69563.0	Mm.64672	NM_001304739	ENSMUSG00000019933	Mrln	2310015B20Rik|Linc-RAM|Mln	myoregulin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83305586-2	chr11	83305486	83305686	+	605.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027915, intron 1 of 20)	ID2|SINE|ID	2889.0	NM_001035854	71770.0	Mm.39053	NM_027915	ENSMUSG00000035152	Ap2b1	1300012O03Rik|AI788979|AP105B	adaptor-related protein complex 2, beta 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99125055-2	chr15	99124955	99125155	+	591.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1790.0	NM_139140	72572.0	Mm.276650	NM_139140	ENSMUSG00000051934	Spats2	2700012F11Rik|59kDa|Scr59|p59	spermatogenesis associated, serine-rich 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-123020297-2	chr7	123020197	123020397	+	619.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	49733.0	NM_175023	19647.0	Mm.4480	NM_011247	ENSMUSG00000030779	Rbbp6	4933422O15Rik|AI316869|BB233631|C030034J04Rik|C77662|P2P-R|PACT	retinoblastoma binding protein 6, ubiquitin ligase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-103332704-4	chr11	103332595	103332795	+	925.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_133715, exon 16 of 16)	3' UTR (NM_133715, exon 16 of 16)	12007.0	NM_133715	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-56019650-4	chr7	56019542	56019742	+	900.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153578)	promoter-TSS (NM_153578)	-69.0	NM_153578	233280.0	Mm.389901	NM_153578	ENSMUSG00000047037	Nipa1	1110027G09Rik|A830014A18Rik|FSP3|Spg6	non imprinted in Prader-Willi/Angelman syndrome 1 homolog (human)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-104047665-2	chr5	104047565	104047765	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_049192)	promoter-TSS (NR_049192)	-338.0	NR_049192	100885831.0		NR_049192	ENSMUSG00000093690	Mir5619	Gm23866|mir-5619|mmu-mir-5619	microRNA 5619	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-96065385-4	chr11	96065266	96065466	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172300)	promoter-TSS (NM_172300)	-2.0	NM_172300	268470.0	Mm.38802	NM_172300	ENSMUSG00000014349	Ube2z	AW049199|C030047H17Rik|D11Moh35	ubiquitin-conjugating enzyme E2Z	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-136175350-4	chr1	136175229	136175429	+	850.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_153829, exon 36 of 36)	non-coding (NR_153829, exon 36 of 36)	37499.0	NM_001329610	76422.0	Mm.159735	NM_001329610		Mroh3	2310006M14Rik	maestro heat-like repeat family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94960203-4	chr10	94960106	94960306	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15628.0	NM_018797	54712.0	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-137582405-4	chr6	137582310	137582510	+	988.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271588, intron 1 of 20)	intron (NM_001271588, intron 1 of 20)	-11401.0	NM_001271587	13860.0	Mm.235346	NM_007945	ENSMUSG00000015766	Eps8	AW261790	epidermal growth factor receptor pathway substrate 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-162943384-2	chr2	162943307	162943507	+	885.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081338)	promoter-TSS (NM_001081338)	-58.0	NM_001081338	241764.0	Mm.187086	NM_001081338	ENSMUSG00000035576	L3mbtl1	C630004G01|L3mbtl|mKIAA0681	L3MBTL1 histone methyl-lysine binding protein	protein-coding	-0.973244663428994	-0.952315594721777	-0.00450891433157474	-0.968117103546747	-0.972477992091202	-0.949249181104308	-0.963262521912125	-0.967581074445158	-3.30458610020401	0.291235735201707	1
Merged-chr13-51408716-2	chr13	51408616	51408816	+	937.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010101)	promoter-TSS (NM_010101)	98.0	NM_010101	13610.0	Mm.136736	NM_010101	ENSMUSG00000067586	S1pr3	AI132464|Edg3|Lpb3|S1p3	sphingosine-1-phosphate receptor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-10453527-3	chr14	10453400	10453600	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001308286)	promoter-TSS (NM_001308286)	-42.0	NM_001308286	14198.0	Mm.397619	NM_010210	ENSMUSG00000060579	Fhit	AW045638|Fra14A2	fragile histidine triad gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-59578023-4	chr9	59577940	59578140	+	973.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175235)	promoter-TSS (NM_175235)	-297.0	NM_175235	76183.0	Mm.265415	NM_175235	ENSMUSG00000032297	Celf6	6330569O16Rik|Brunol6	CUGBP, Elav-like family member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-8744430-2	chr16	8744330	8744530	+	999.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-6088.0	NM_001003918	252870.0	Mm.295330	NM_001003918	ENSMUSG00000022710	Usp7	2210010O09Rik|AA409944|AA617399|AU019296|AW548146|C80752|Hausp	ubiquitin specific peptidase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-76903921-2	chr12	76903821	76904021	+	610.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_145927, intron 7 of 11)	MTE2a|LTR|ERVL-MaLR	58327.0	NM_008558	17187.0	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28212059-2	chr17	28211959	28212159	+	639.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027185, intron 1 of 10)	intron (NM_027185, intron 1 of 10)	4281.0	NM_027185	23853.0	Mm.204731	NM_027185	ENSMUSG00000002257	Def6	2410003F05Rik|6430538D02Rik|AV094905|Ibp|Slat|Slat2|Slat6	differentially expressed in FDCP 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-90215463-4	chr7	90215413	90215613	+	993.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	49919.0	NM_029256	75338.0	Mm.487222	NM_029256	ENSMUSG00000030617	Ccdc83	4930549K11Rik|4930554C01Rik|4932423M01Rik	coiled-coil domain containing 83	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-20213779-3	chr16	20213703	20213903	+	569.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033237, intron 21 of 29)	intron (NM_001033237, intron 21 of 29)	27555.0	NM_198599	208158.0	Mm.326383	NM_198599	ENSMUSG00000041205	Map6d1	A330066I15Rik	MAP6 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-67102227-3	chr6	67102120	67102320	+	762.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64813.0	NM_007836	13197.0	Mm.72235	NM_007836	ENSMUSG00000036390	Gadd45a	AA545191|Ddit1|GADD45	growth arrest and DNA-damage-inducible 45 alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-143487771-2	chr5	143487671	143487871	+	589.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144915, intron 8 of 14)	B4|SINE|B4	23278.0	NM_144915	231871.0	Mm.469963	NM_144915	ENSMUSG00000039206	Daglb	E330036I19Rik	diacylglycerol lipase, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-39644749-4	chr8	39644637	39644837	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2059.0	NM_001113326	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	2.25175954187856	2.66094803451155	2.14574026643869	2.49694800212451	3.30926929377215	3.25209900068815	2.16261642483771	2.09586622946709	0.876128835194958	0.266805348365211	0.769853847164169
Merged-chr2-43753293-2	chr2	43753193	43753393	+	733.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301831, intron 1 of 14)	intron (NM_001301831, intron 1 of 14)	4469.0	NM_001301831	76117.0	Mm.217350	NM_153820	ENSMUSG00000049744	Arhgap15	5830480G12Rik	Rho GTPase activating protein 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-20740631-4	chr9	20740521	20740721	+	930.224976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357639, intron 1 of 5)	intron (NM_001357639, intron 1 of 5)	5675.0	NM_001357639	244723.0	Mm.293552	NM_173777	ENSMUSG00000032172	Olfm2	A030009A06Rik	olfactomedin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-45882363-3	chr1	45882245	45882445	+	957.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43249.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-22166405-4	chr8	22166338	22166538	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011848)	promoter-TSS (NM_011848)	-3.0	NM_011848	23954.0	Mm.41413	NM_011848	ENSMUSG00000031478	Nek3	-	NIMA (never in mitosis gene a)-related expressed kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-45312019-4	chr9	45311909	45312109	+	897.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7091.0	NM_001013373	214531.0	Mm.394987	NM_001013373	ENSMUSG00000037129	Tmprss13	BC010843|Tpmrss13	transmembrane protease, serine 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101983748-1	chr15	101983648	101983848	+	675.5	f0_balb.idr	Intergenic	Intergenic	20594.0	NM_031170	16691.0	Mm.358618	NM_031170	ENSMUSG00000049382	Krt8	AA960620|AL022697|AU019895|Card2|EndoA|K8|Krt-2.8|Krt2-8	keratin 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-38144855-4	chr18	38144764	38144964	+	930.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	64898.0	NM_029357	75599.0	Mm.36560	NM_029357	ENSMUSG00000051375	Pcdh1	2010005A06Rik|AI585920	protocadherin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59426957-3	chr15	59426859	59427059	+	837.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164604, intron 3 of 4)	intron (NM_001164604, intron 3 of 4)	52761.0	NM_001164604	68501.0	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-160304173-4	chr2	160304071	160304271	+	891.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	23323.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	1.40219825441482	2.47927820278689	1.06196079461906	2.0315240097114	1.41386670761233	2.49922817830248	1.06793260274626	2.0430622095976	0.0361358462304122	0.975193334707513	0.998431161219273
Merged-chr6-116694177-4	chr6	116694079	116694279	+	937.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_178768, exon 5 of 5)	3' UTR (NM_178768, exon 5 of 5)	-20343.0	NM_178045	213391.0	Mm.257931	NM_178045	ENSMUSG00000042129	Rassf4	3830411C14Rik|AD037|AI586137	Ras association (RalGDS/AF-6) domain family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-57761506-4	chr10	57761406	57761606	+	928.758301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23417.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-144956042-3	chr4	144955943	144956143	+	927.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME4b|LINE|L1	62906.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-118660150-4	chr2	118660052	118660252	+	675.604126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3425.0	NM_001033254	214230.0	Mm.241857	NM_001033254	ENSMUSG00000074923	Pak6	4732456M09	p21 (RAC1) activated kinase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-38220469-4	chr5	38220375	38220575	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025281)	promoter-TSS (NM_025281)	-7.0	NM_025281	17089.0	Mm.28560	NM_025281	ENSMUSG00000067367	Lyar	MLZ-264	Ly1 antibody reactive clone	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101467622-4	chr11	101467531	101467731	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009708)	promoter-TSS (NM_009708)	-544.0	NM_009708	11858.0	Mm.378883	NM_009708	ENSMUSG00000001313	Rnd2	Arhn|Rohn|rho7	Rho family GTPase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-53265078-4	chr18	53264992	53265192	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029394, intron 1 of 6)	RLTR30D2_MM|LTR|ERV1	19430.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-71216047-2	chr9	71215947	71216147	+	790.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_110519)	promoter-TSS (NR_110519)	258.0	NM_009022	19378.0	Mm.42016	NM_009022	ENSMUSG00000013584	Aldh1a2	AV116159|Aldh1a7|Raldh1|Raldh2	aldehyde dehydrogenase family 1, subfamily A2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118479309-2	chr9	118479209	118479409	+	716.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_010136, exon 1 of 6)	exon (NM_010136, exon 1 of 6)	1120.0	NM_010136	13813.0	Mm.200692	NM_010136	ENSMUSG00000032446	Eomes	C77258|TBR-2|Tbr2	eomesodermin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91192136-2	chr2	91192036	91192236	+	871.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355279, intron 3 of 9)	intron (NM_001355279, intron 3 of 9)	2899.0	NM_013839	22259.0	Mm.22690	NM_013839	ENSMUSG00000002108	Nr1h3	AU018371|LXR|RLD1|Unr1	nuclear receptor subfamily 1, group H, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-102981032-3	chr2	102980933	102981133	+	788.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-79368.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-95421139-1	chr14	95421039	95421239	+	557.0	f1_c57bl6.idr	Intergenic	Intergenic	-460115.0	NM_001358241	66732.0	Mm.75060	NM_025733	ENSMUSG00000034689	4921530L21Rik	-	RIKEN cDNA 4921530L21 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-107031265-4	chr8	107031199	107031399	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_126165)	promoter-TSS (NM_126165)	-27.0	NM_126165	116733.0	Mm.236004	NM_126165	ENSMUSG00000031913	Vps4a	4930589C15Rik|AI325971|AW553189	vacuolar protein sorting 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-34573093-2	chr19	34572993	34573193	+	794.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001355262, exon 3 of 3)	exon (NM_001355262, exon 3 of 3)	-10436.0	NM_010501	15959.0	Mm.426079	NM_010501	ENSMUSG00000074896	Ifit3	Ifi49|P49	interferon-induced protein with tetratricopeptide repeats 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-121417187-1	chr2	121417087	121417287	+	543.0	f1_c57bl6.idr	intron (NM_007952, intron 1 of 12)	B4A|SINE|B4	3285.0	NM_007952	14827.0	Mm.263177	NM_007952	ENSMUSG00000027248	Pdia3	58kDa|ERp57|ERp60|ERp61|Erp|Grp58|PDI|PDI-Q2|PI-PLC|PLC[a]|Plca	protein disulfide isomerase associated 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-53283149-3	chr15	53283035	53283235	+	993.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	63048.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-54755562-3	chr3	54755493	54755693	+	882.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019483)	promoter-TSS (NM_019483)	11.0	NM_019483	55994.0	Mm.244353	NM_019483	ENSMUSG00000027796	Smad9	MADH6|Madh8|Madh9|Smad8	SMAD family member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-57157522-2	chr9	57157422	57157622	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025417, intron 1 of 7)	intron (NM_025417, intron 1 of 7)	777.0	NM_025417	66199.0	Mm.41687	NM_025417	ENSMUSG00000032299	Commd4	1110039H05Rik	COMM domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-157448026-3	chr2	157447924	157448124	+	906.0277710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025395, intron 2 of 13)	B3A|SINE|B2	23731.0	NM_001025395	20779.0	Mm.22845	NM_009271	ENSMUSG00000027646	Src	AW259666|pp60c-src	Rous sarcoma oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124040588-1	chr5	124040488	124040688	+	597.0	f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-8328.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	-0.365230317961526	-0.352728944654356	0.303458966597621	-0.359992673005909	0.0122203314867909	-0.157186728353499	-0.355927638165489	-0.35944081344012	-0.496182888562481	0.843296828633609	1
Merged-chr17-56765076-6	chr17	56764947	56765147	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360405, intron 1 of 11)	CpG	296.0	NM_144858	224907.0	Mm.293973	NM_144858	ENSMUSG00000007603	Dus3l	AI662135|AW557805	dihydrouridine synthase 3-like (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-170795965-4	chr1	170795868	170796068	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081304, intron 10 of 15)	intron (NM_001081304, intron 10 of 15)	71803.0	NM_001081304	226641.0	Mm.377046	NM_001081304	ENSMUSG00000026663	Atf6	9130025P16Rik|9630036G24|AA789574|Atf6alpha|ESTM49	activating transcription factor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-27914887-2	chr13	27914787	27914987	+	545.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR44B|LTR|ERVK	65545.0	NM_001045532	666317.0		NM_001045532	ENSMUSG00000062551	Prl2c1	Ghd22	Prolactin family 2, subfamily c, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-27591011-2	chr7	27590911	27591111	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001110208)	promoter-TSS (NM_001110208)	-541.0	NM_001110208	11652.0	Mm.177194	NM_007434	ENSMUSG00000004056	Akt2	2410016A19Rik|AW554154|PKB|PKBbeta	thymoma viral proto-oncogene 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4961144-2	chr16	4961044	4961244	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028301, intron 1 of 16)	B3A|SINE|B2	3093.0	NM_028301	72615.0	Mm.290628	NM_028301	ENSMUSG00000022515	Anks3	2700067D09Rik|C81345|mKIAA1977	ankyrin repeat and sterile alpha motif domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56075067-4	chr17	56074955	56075155	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_024432, exon 2 of 12)	5' UTR (NM_024432, exon 2 of 12)	4278.0	NM_024432	66530.0	Mm.28000	NM_024432	ENSMUSG00000019578	Ubxn6	1200008L11Rik|2210415J11Rik|AU040909|Ubxd1|Ubxdc2	UBX domain protein 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44055679-3	chr7	44055550	44055750	+	843.7333369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_020268, exon 3 of 5)	exon (NM_020268, exon 3 of 5)	3360.0	NM_020268	16619.0	Mm.445911	NM_020268	ENSMUSG00000063177	Klk1b27	Gk27|Klk21l|Klk27|mGK-27	kallikrein 1-related peptidase b27	protein-coding	-1.8418762459921	-1.8125357239735	-1.82140854000656	-1.82869693527674	-1.56059678980999	-1.8106129477253	-1.81939992894326	-1.82739231600805	1.3620893379502	0.699511506488145	1
Merged-chr5-146921422-4	chr5	146921333	146921533	+	678.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27224.0	NM_025652	66596.0	Mm.196528	NM_025652	ENSMUSG00000016503	Gtf3a	2010015D03Rik|2610111I01Rik|5330403M05Rik	general transcription factor III A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134933133-2	chr6	134933033	134933233	+	660.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_037956, intron 1 of 1)	intron (NR_037956, intron 1 of 1)	4041.0	NR_037955	381822.0	Mm.5935	NR_037955	ENSMUSG00000098318	Lockd	1190002F15Rik|AI120476|Droc	lncRNA downstream of Cdkn1b	ncRNA	1.28784600531334	0.856853544920642	1.95861679287129	0.826829197351639	1.29943985553456	1.62120623270235	1.97634781295034	0.829155768953033	0.557816069998885	0.686953229157835	0.996533206832645
Merged-chr1-64036577-2	chr1	64036477	64036677	+	929.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_033563, intron 3 of 3)	intron (NM_033563, intron 3 of 3)	5924.0	NR_105864	102466760.0		NR_105864	ENSMUSG00000098487	Mir6899	Gm27384|mmu-mir-6899	microRNA 6899	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-97447989-1	chr8	97447889	97448089	+	705.0	f1_balb.idr	Intergenic	RMER17B|LTR|ERVK	-1559624.0	NM_010325	14719.0	Mm.230169	NM_010325	ENSMUSG00000031672	Got2	AL022787|FABP-pm|Got-2|Kyat4|mAspAT	glutamatic-oxaloacetic transaminase 2, mitochondrial	protein-coding	-2.18308165884198	-2.15547475440471	-2.16382331017202	-2.1706810624505	-2.18114370519566	-2.15366558754311	-2.03057248461154	-2.16945352807143	0.759018020146679	0.829933115115583	1
Merged-chr13-70038454-3	chr13	70038330	70038530	+	864.06665	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131156, intron 2 of 2)	intron (NR_131156, intron 2 of 2)	-10082.0	NR_045965	74280.0	Mm.273343	NR_045965	ENSMUSG00000099639	1700084F23Rik	1700003E18Rik|4930589D02Rik	RIKEN cDNA 1700084F23 gene	ncRNA	3.58442682120043	2.81511532344397	3.45845249100349	3.1655454857184	1.29847562334738	2.23478495900663	1.41700794161683	2.75442770900337	-2.33167160407114	0.00517479782645228	0.0685550419361476
Merged-chr8-11470961-2	chr8	11470861	11471061	+	819.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_011227, intron 1 of 1)	intron (NM_011227, intron 1 of 1)	-6968.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-78510393-4	chr8	78510291	78510491	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104094, intron 1 of 9)	intron (NR_104094, intron 1 of 9)	1063.0	NM_001282108	76775.0	Mm.334631	NM_029736	ENSMUSG00000031684	Slc10a7	2410193C02Rik|P7	solute carrier family 10 (sodium/bile acid cotransporter family), member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-172084993-1	chr1	172084893	172085093	+	826.0	f1_balb.idr	intron (NM_009938, intron 1 of 32)	intron (NM_009938, intron 1 of 32)	-2244.0	NM_021607	59287.0	Mm.218203	NM_021607	ENSMUSG00000003458	Ncstn	9430068N19Rik|AA727311|Aph2|D1Dau13e|Kiaa0253|Nct|mKIAA0253	nicastrin	protein-coding	-1.06997269762433	-1.30473905204845	-1.3145270772132	-1.32256725251374	-1.06385251204029	-1.30261794616352	-1.3123112828633	-1.32112806497905	0.0394047164033882	0.991001358494878	1
Merged-chr8-35104908-2	chr8	35104826	35105026	+	818.599976	f0_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-139236.0	NM_175091	21951.0	Mm.88364	NM_175091	ENSMUSG00000031529	Tnks	4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	protein-coding	2.6398288215541	2.51978271883487	3.16414698421324	2.36862937306125	2.66136952003039	2.53810778430711	2.57715488890135	1.72153210451395	-0.588806093844987	0.45368790857718	0.919120493489568
Merged-chr7-128050894-2	chr7	128050794	128050994	+	712.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1C|Other|Other	-11746.0	NM_001082960	16409.0	Mm.262106	NM_008401	ENSMUSG00000030786	Itgam	CD11b/CD18|CR3|CR3A|Cd11b|F730045J24Rik|Ly-40|MAC1|Mac-1|Mac-1a	integrin alpha M	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46326692-2	chr19	46326592	46326792	+	666.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001347454, exon 1 of 18)	5' UTR (NM_001347454, exon 1 of 18)	174.0	NM_001347454	73728.0	Mm.268532	NM_028627	ENSMUSG00000037126	Psd	1110007H17Rik|A930015K15|Efa6|Efa6a|Psdl|mKIAA2011	pleckstrin and Sec7 domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128373064-2	chr2	128372964	128373164	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_028591, intron 1 of 1)	intron (NR_028591, intron 1 of 1)	56287.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-16050333-3	chr19	16050226	16050426	+	997.7666630000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	65251.0	NR_045355	100502653.0	Mm.149980	NR_045355	ENSMUSG00000097557	C130060C02Rik	-	RIKEN cDNA C130060C02 gene	ncRNA	0.884154320079443	1.58818865520355	1.13232891140868	0.30064003138141	0.28747605562362	0.32392547611602	0.312334985680755	0.302244268434699	-4.67665751081106	0.0109948704150425	0.116260095687144
Merged-chr14-19917877-2	chr14	19917777	19917977	+	560.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285910, intron 1 of 2)	intron (NM_001285910, intron 1 of 2)	58816.0	NM_001285911	14702.0	Mm.41737	NM_010315	ENSMUSG00000043004	Gng2	-	guanine nucleotide binding protein (G protein), gamma 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-21908160-7	chr10	21908056	21908256	+	759.464294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161845, intron 1 of 13)	intron (NM_001161845, intron 1 of 13)	25972.0	NM_001161845	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-137749378-1	chr5	137749278	137749478	+	584.0	f0_balb.idr	intron (NM_023910, intron 2 of 4)	intron (NM_023910, intron 2 of 4)	3409.0	NM_029805	78829.0	Mm.286399	NM_023910	ENSMUSG00000029723	Tsc22d4	0610009M14Rik|1700023B23Rik|AI415410|Thg-1pit|Tilz2	TSC22 domain family, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-114892270-4	chr6	114892153	114892353	+	961.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356371, intron 2 of 5)	intron (NM_001356371, intron 2 of 5)	29568.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119270837-1	chr11	119270737	119270937	+	718.0	f1_c57bl6.idr	intron (NM_008064, intron 2 of 19)	intron (NM_008064, intron 2 of 19)	2874.0	NM_008064	14387.0	Mm.4793	NM_008064	ENSMUSG00000025579	Gaa	E430018M07Rik	glucosidase, alpha, acid	protein-coding	2.40880885246401	1.70462081687636	2.29398926185229	2.34265486441053	2.24515558837586	2.71390688391432	2.31127510917663	2.11898153690548	0.337770007512606	0.689003642444183	0.996533206832645
Merged-chr18-77865609-4	chr18	77865513	77865713	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013831, intron 6 of 14)	intron (NM_013831, intron 6 of 14)	-69223.0	NR_152167	619308.0	Mm.490456	NM_001033812		F830208F22Rik	-	RIKEN cDNA F830208F22 gene	ncRNA	4.20842263725094	3.83660655739936	3.32836497502416	3.51878097234829	4.63393315297794	4.28899092513603	3.96332677929436	4.03453877273466	0.670034755182265	0.148951120022273	0.600509253369365
Merged-chr4-134251407-3	chr4	134251308	134251508	+	756.099976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001099296, exon 2 of 2)	exon (NM_001099296, exon 2 of 2)	2698.0	NM_001099296	72690.0	Mm.100168	NM_001099296	ENSMUSG00000050105	Grrp1	2810043G13Rik|Fam110d	glycine/arginine rich protein 1	protein-coding	2.11451623654471	2.39228494216568	1.58685025073362	1.27873943169305	1.85151633486022	3.0440555988076	3.08895639424106	2.92256280594773	1.9318496696644	0.0327203695975399	0.252624835541367
Merged-chr18-10610276-4	chr18	10610188	10610388	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081222)	promoter-TSS (NM_001081222)	64.0	NM_001081222	77805.0	Mm.210996	NM_144542	ENSMUSG00000024293	Esco1	A930014I12Rik	establishment of sister chromatid cohesion N-acetyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-66896799-1	chr6	66896699	66896899	+	1000.0	f0_balb.idr	promoter-TSS (NM_001177558)	promoter-TSS (NM_001177558)	-92.0	NM_001177558	14701.0	Mm.234342	NM_025278	ENSMUSG00000036402	Gng12	2010305F15Rik|AA536815|AI115529|AI314170|AI842738	guanine nucleotide binding protein (G protein), gamma 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-96932387-2	chr1	96932287	96932487	+	615.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_120500, intron 9 of 14)	L1_Mus4|LINE|L1	-60216.0	NM_172658	227394.0	Mm.11662	NM_172658	ENSMUSG00000040693	Slco4c1	9530051F04|C330017E21Rik|OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20|oatp-R	solute carrier organic anion transporter family, member 4C1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-138258123-4	chr2	138258036	138258236	+	933.43335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025431, intron 1 of 4)	intron (NM_001025431, intron 1 of 4)	1552.0	NM_001025431	228662.0	Mm.153405	NM_145534	ENSMUSG00000062098	Btbd3	mKIAA0952	BTB (POZ) domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-19491982-3	chr10	19491874	19492074	+	740.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152784, intron 2 of 3)	intron (NR_152784, intron 2 of 3)	-2669.0	NR_152785	102635880.0	Mm.331974	NR_152784	ENSMUSG00000110902	Gm33104	-	predicted gene, 33104	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-35734242-4	chr16	35734140	35734340	+	834.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153550, intron 3 of 8)	intron (NM_153550, intron 3 of 8)	35116.0	NM_153550	224132.0	Mm.24094	NM_153550	ENSMUSG00000022848	Dirc2	RCC4	disrupted in renal carcinoma 2 (human)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-54585403-4	chr1	54585309	54585509	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27725.0	NM_001163314	241062.0	Mm.103539	NM_175508	ENSMUSG00000073678	Pgap1	5033403E17Rik|9030223K07Rik|A530084K22|D230012E17Rik|oto	post-GPI attachment to proteins 1	protein-coding	0.243112874869716	0.27792971275552	1.46024503931114	0.469211406914555	0.436151091512471	1.27940345747054	0.269257312953499	0.25955158661498	-0.376656050523421	0.837077669192276	0.998431161219273
Merged-chr13-111936147-4	chr13	111936041	111936241	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	68205.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-49994645-4	chr11	49994528	49994728	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30703.0	NM_021540	59044.0	Mm.359004	NM_021540	ENSMUSG00000020376	Rnf130	2510042A13Rik|G1RZFP|G1rp|GOLIATH|GP	ring finger protein 130	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122561393-4	chr8	122561289	122561489	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6626.0	NM_026014	67177.0	Mm.21873	NM_026014	ENSMUSG00000006585	Cdt1	2610318F11Rik|AW545653|C76791|Ris2	chromatin licensing and DNA replication factor 1	protein-coding	5.18982796238802	5.25612781881239	5.06427567154903	4.8997411825461	4.66830110894138	5.09545623639636	5.17135082758508	5.61447645411482	0.0804697812656621	0.801397371403128	0.998431161219273
Merged-chr13-107887642-2	chr13	107887542	107887742	+	819.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 2 of 14)	intron (NM_145456, intron 2 of 14)	2422.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140818806-3	chr5	140818701	140818901	+	708.849976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010302, intron 1 of 3)	intron (NM_010302, intron 1 of 3)	11630.0	NM_010302	14673.0	Mm.370185	NM_010302	ENSMUSG00000000149	Gna12	AI414047|AI504261|Galpha12	guanine nucleotide binding protein, alpha 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64463822-4	chr5	64463733	64463933	+	904.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040681, intron 1 of 2)	MLT1C|LTR|ERVL-MaLR	4109.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	2.84166072270386	3.02690256738707	2.74191726615076	3.19270222781964	2.63383341623518	1.75603411414027	1.42618725743614	2.04574486554286	-1.86887636498203	0.0244641168829562	0.206027473814957
Merged-chr15-63704882-4	chr15	63704787	63704987	+	891.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	103852.0	NM_031378	83492.0	Mm.335619	NM_031378	ENSMUSG00000079025	Gsdmc	Gsdmc1|Mlze	gasdermin C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-133407980-3	chr2	133407905	133408105	+	847.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-144154.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-138089487-2	chr1	138089387	138089587	+	568.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001268286, intron 14 of 28)	intron (NM_001268286, intron 14 of 28)	85639.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-119390259-2	chr6	119390159	119390359	+	754.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_197985, intron 1 of 7)	intron (NM_197985, intron 1 of 7)	-1525.0	NM_001355692	68465.0	Mm.291826	NM_197985	ENSMUSG00000030168	Adipor2	1110001I14Rik|ADCR2|AI115388|AW554121|D6Ucla1e|Paqr2	adiponectin receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-9878614-4	chr2	9878516	9878716	+	869.56665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008091)	promoter-TSS (NM_008091)	-16.0	NM_001355112	14462.0	Mm.313866	NM_008091	ENSMUSG00000015619	Gata3	Gata-3|jal	GATA binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76473740-2	chr15	76473616	76473816	+	703.5	f0_c57.idr|f1_c57bl6.idr	intron (NM_013481, intron 2 of 15)	intron (NM_013481, intron 2 of 15)	3553.0	NM_013481	12181.0	Mm.4283	NM_013481	ENSMUSG00000022557	Bop1	AU020183|AW146150|D18861|Erb1p|Kiaa0124|mKIAA0124	block of proliferation 1	protein-coding	-1.50682290038489	-1.31787766594575	-1.48393289872978	-1.33595151133619	-1.50451949613502	-1.31572733451463	-1.48168657417364	-1.49062483785939	-0.740464490307937	0.815857097700362	1
Merged-chr4-72199145-4	chr4	72199065	72199265	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285530, intron 2 of 17)	intron (NM_001285530, intron 2 of 17)	1728.0	NM_011599	21885.0	Mm.278444	NM_011599	ENSMUSG00000008305	Tle1	C230057C06Rik|Estm14|Grg-1|Grg1|Tle4l	transducin-like enhancer of split 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-21692481-2	chr16	21692381	21692581	+	683.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001881, intron 1 of 1)	intron (NM_001001881, intron 1 of 1)	2184.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100545622-4	chr11	100545492	100545692	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028918)	promoter-TSS (NM_028918)	-40.0	NM_028918	74407.0	Mm.31590	NM_028918	ENSMUSG00000006784	Ttc25	4933404O19Rik	tetratricopeptide repeat domain 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-60803723-4	chr18	60803623	60803823	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010545)	promoter-TSS (NM_010545)	-126.0	NM_001042605	16149.0	Mm.439737	NM_010545	ENSMUSG00000024610	Cd74	CLIP|DHLAG|HLADG|Ia-GAMMA|Ii	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	protein-coding	7.47114918208139	7.9507512671131	7.64829538143291	7.4029217079397	7.48838302552271	7.55324163269748	7.49509104419963	7.12224131011653	-0.214942732880715	0.192760986728199	0.671399163566363
Merged-chr5-123139906-2	chr5	123139806	123140006	+	640.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2287.0	NM_001040398	208043.0	Mm.250391	NM_177581	ENSMUSG00000038384	Setd1b	AA516740|BC035291|KMT2G|mKIAA1076	SET domain containing 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16160879-3	chr7	16160773	16160973	+	619.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_148946)	TTS (NM_148946)	-14522.0	NM_001277988	17537.0	Mm.360516	NM_008627	ENSMUSG00000041420	Meis3	AI573393|Mrg2	Meis homeobox 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-112225798-4	chr7	112225721	112225921	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177282)	promoter-TSS (NM_177282)	-15.0	NM_177282	320878.0	Mm.52312	NM_177282	ENSMUSG00000038244	Mical2	5330438E18Rik|9530064J02|MICAL-2|mKIAA0750	microtubule associated monooxygenase, calponin and LIM domain containing 2	protein-coding	6.26983404039618	6.00662747211288	5.88573093309518	4.95015901298081	6.44316085424802	6.78575745990458	6.01101473274515	6.19641175792493	0.576805972025124	0.0405797298864141	0.287298740663176
Merged-chr6-122308766-4	chr6	122308647	122308847	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010749)	promoter-TSS (NM_010749)	27.0	NM_010749	17113.0	Mm.249225	NM_010749	ENSMUSG00000007458	M6pr	CD-MPR|Mpr46	mannose-6-phosphate receptor, cation dependent	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-137082880-1	chr5	137082780	137082980	+	801.0	f1_balb.idr	Intergenic	ID_B1|SINE|B4	-10608.0	NM_008871	18787.0	Mm.250422	NM_008871	ENSMUSG00000037411	Serpine1	PAI-1|PAI1|Planh1	serine (or cysteine) peptidase inhibitor, clade E, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-51935252-4	chr11	51935145	51935345	+	943.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-32386.0	NM_029976	52626.0	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-85985925-4	chr1	85985826	85986026	+	935.7333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24871.0	NM_001033290	227326.0	Mm.244158	NM_001033290	ENSMUSG00000049608	Gpr55	CTFL|Gm218|Lpir1	G protein-coupled receptor 55	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-60779864-4	chr10	60779771	60779971	+	886.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029770, intron 3 of 16)	intron (NM_029770, intron 3 of 16)	-27089.0	NM_023596	71279.0	Mm.284462	NM_023596	ENSMUSG00000020100	Slc29a3	4933435C21Rik|AW987637|Ent3	solute carrier family 29 (nucleoside transporters), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-86065929-1	chr10	86065829	86066029	+	554.0	f1_c57bl6.idr	intron (NM_013722, intron 10 of 13)	intron (NM_013722, intron 10 of 13)	-29925.0	NR_038024	78170.0	Mm.444790	NR_038024	ENSMUSG00000112493	4930486F22Rik	-	RIKEN cDNA 4930486F22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-6323320-4	chr2	6323199	6323399	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080548, intron 1 of 14)	CpG	542.0	NM_001080548	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-95290935-2	chr10	95290835	95291035	+	709.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001330138, intron 2 of 2)	intron (NM_001330138, intron 2 of 2)	32774.0	NM_001330138	12905.0	Mm.473739	NM_009950	ENSMUSG00000045867	Cradd	RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106157851-2	chr11	106157751	106157951	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001356459, exon 5 of 5)	3' UTR (NM_001356459, exon 5 of 5)	2076.0	NM_001356459	67803.0	Mm.21687	NM_172397	ENSMUSG00000040699	Limd2	0610025L06Rik|AI413966	LIM domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107295696-2	chr9	107295584	107295784	+	645.0	f0_c57.idr|f1_c57bl6.idr	promoter-TSS (NM_009895)	promoter-TSS (NM_009895)	-975.0	NM_009895	12700.0	Mm.4592	NM_009895	ENSMUSG00000032578	Cish	CIS-1|CIS1|Cis|F17|F23|SOCS	cytokine inducible SH2-containing protein	protein-coding	-1.09767014501538	-1.0756624850493	-0.512591899128158	-1.09427141482573	-0.9475180626469	-1.07317923123506	-1.08452756396257	-1.09391344974982	-1.77250465997347	0.581527481992691	1
Merged-chr7-19103514-2	chr7	19103414	19103614	+	738.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8970.0	NM_011383	20475.0	Mm.3410	NM_011383	ENSMUSG00000040841	Six5	Dmahp|MDMAHP|TrexBF	sine oculis-related homeobox 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-65318907-2	chr3	65318807	65319007	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357358, intron 7 of 13)	intron (NM_001357358, intron 7 of 13)	-16222.0	NR_126080	102637797.0	Mm.446731	NR_126080	ENSMUSG00000104093	A330015K06Rik	-	RIKEN cDNA A330015K06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-50422097-2	chr11	50421997	50422197	+	602.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172557, intron 1 of 17)	intron (NM_172557, intron 1 of 17)	9014.0	NM_172557	216724.0	Mm.390400	NM_172557	ENSMUSG00000020375	Rufy1	3000002E04Rik|Rabip4|ZFYVE12	RUN and FYVE domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-88722440-5	chr4	88722281	88722481	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_172871, exon 1 of 1)	5' UTR (NM_172871, exon 1 of 1)	127.0	NM_172871	242521.0	Mm.260601	NM_172871	ENSMUSG00000070923	Klhl9	8030469P05|C530050O22Rik|mKIAA1354	kelch-like 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-128320639-4	chr7	128320540	128320740	+	791.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID|SINE|ID	-22509.0	NM_145590	233913.0	Mm.220880	NM_145590	ENSMUSG00000030780	BC017158	-	cDNA sequence BC017158	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-117509754-4	chr5	117509657	117509857	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001312914, intron 3 of 19)	intron (NM_001312914, intron 3 of 19)	95755.0	NM_001312914	333050.0	Mm.437947	NM_001034873	ENSMUSG00000061578	Ksr2	-	kinase suppressor of ras 2	protein-coding	1.1490243986387	1.4430402238944	0.637168876973122	1.42676775073117	0.615833440915815	0.871287176038323	0.639660314052987	1.23361131162488	-1.54120240020706	0.321956514072525	0.823903365381149
Merged-chr4-53413166-2	chr4	53413066	53413266	+	826.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-27247.0	NM_001159633	100434.0	Mm.482207	NM_133891	ENSMUSG00000028412	Slc44a1	2210409B22Rik|4833416H08Rik|AW547365|CHTL1|CTL1|Cdw92	solute carrier family 44, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-6168038-2	chr2	6167938	6168138	+	787.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25213.0	NR_040333	320132.0	Mm.445891	NR_040333	ENSMUSG00000087125	A230108P19Rik	-	RIKEN cDNA A230108P19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139338050-4	chr5	139337933	139338133	+	925.2333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_197980, exon 3 of 3)	3' UTR (NM_197980, exon 3 of 3)	7133.0	NM_197980	68033.0	Mm.261064	NM_197980	ENSMUSG00000045438	Cox19	1810074D02Rik|2810437L13Rik	cytochrome c oxidase assembly protein 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-70224803-4	chr10	70224727	70224927	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20163.0	NM_001304739	69563.0	Mm.64672	NM_001304739	ENSMUSG00000019933	Mrln	2310015B20Rik|Linc-RAM|Mln	myoregulin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44485313-2	chr7	44485213	44485413	+	851.900024	f1_balb.idr|f1_c57bl6.idr	TTS (NR_131001)	TTS (NR_131001)	796.0	NR_131001	71368.0	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	Gm45123	RIKEN cDNA 5430431A17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-96245433-2	chr4	96245333	96245533	+	615.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	103247.0	NM_001004141	100066.0	Mm.26915	NM_001004141	ENSMUSG00000066097	Cyp2j11	AI314783|Cyp2j11-ps	cytochrome P450, family 2, subfamily j, polypeptide 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-59584858-4	chr1	59584763	59584963	+	685.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013771, intron 12 of 19)	intron (NM_001013771, intron 12 of 19)	60569.0	NM_001357842	381260.0	Mm.486706	NM_001013771	ENSMUSG00000047361	Gm973	AW554518	predicted gene 973	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-77044045-3	chr1	77043943	77044143	+	642.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(A)n|Simple_repeat|Simple_repeat	452725.0	NR_105770	102465180.0		NR_105770	ENSMUSG00000099141	Mir6352	Gm27481|mmu-mir-6352	microRNA 6352	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-24663092-2	chr12	24662992	24663192	+	682.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_178357)	TTS (NM_178357)	11721.0	NM_178357	194655.0	Mm.9616	NM_178357	ENSMUSG00000020653	Klf11	9830142A17|D12Ertd427e|Tieg2|Tieg2b|Tieg3	Kruppel-like factor 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-33562057-2	chr17	33561963	33562163	+	603.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_053214, intron 1 of 27)	intron (NM_053214, intron 1 of 27)	6356.0	NM_053214	17916.0	Mm.42019	NM_053214	ENSMUSG00000024300	Myo1f	C330006B10Rik	myosin IF	protein-coding	-0.286347779401152	1.25053518908032	-0.266522220336461	-0.273843659684323	-0.284458842945849	-0.255196266588582	0.18929186375321	-0.272553565414543	-2.58173833334196	0.266373743340673	1
Merged-chr16-33928838-2	chr16	33928738	33928938	+	783.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 10 of 14)	intron (NM_001145884, intron 10 of 14)	38200.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-105696969-2	chr4	105696869	105697069	+	845.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	539622.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-70851975-4	chr9	70851863	70852063	+	896.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001324473, intron 1 of 8)	intron (NM_001324473, intron 1 of 8)	82845.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-42670055-2	chr11	42669955	42670155	+	598.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	248705.0	NM_001347314	14401.0	Mm.338723	NM_008070	ENSMUSG00000007653	Gabrb2	AI834970|C030002O17Rik|C030021G16Rik|Gabrab2|Gabrb-2	gamma-aminobutyric acid (GABA) A receptor, subunit beta 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71559102-4	chr8	71559000	71559200	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001100462)	promoter-TSS (NM_001100462)	-229.0	NM_001100462	434325.0	Mm.33613	NM_001100462	ENSMUSG00000043664	Tmem221	-	transmembrane protein 221	protein-coding	6.48860920883714	6.80775949928847	6.72853989516387	6.88462613186616	6.25305814249609	5.85194603814344	7.11570826962994	6.6254361992582	-0.206138803449352	0.394920688848495	0.882837719236596
Merged-chr13-119812083-2	chr13	119811983	119812183	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18134.0	NM_001001449	380878.0	Mm.327311	NM_001001449	ENSMUSG00000094237	AF067063	-	cDNA sequence AF067063	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-135977063-4	chr6	135976926	135977126	+	913.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008171, intron 4 of 14)	intron (NM_008171, intron 4 of 14)	196485.0	NM_008171	14812.0	Mm.436649	NM_008171	ENSMUSG00000030209	Grin2b	AW490526|GluN2B|NR2B|Nmdar2b	glutamate receptor, ionotropic, NMDA2B (epsilon 2)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16891763-4	chr7	16891658	16891858	+	996.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010320)	promoter-TSS (NM_010320)	-28.0	NM_010320	14709.0	Mm.103770	NM_010320	ENSMUSG00000063594	Gng8	G(y)8	guanine nucleotide binding protein (G protein), gamma 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5740781-2	chr17	5740681	5740881	+	603.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 8 of 8)	intron (NM_146073, intron 8 of 8)	-57876.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-119689266-1	chr13	119689166	119689366	+	541.0	f1_balb.idr	Intergenic	L1_Mus3|LINE|L1	-1085.0	NM_145942	208715.0	Mm.61526	NM_145942	ENSMUSG00000093930	Hmgcs1	B130032C06Rik	3-hydroxy-3-methylglutaryl-Coenzyme A synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101181054-2	chr11	101180954	101181154	+	880.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_016782, intron 8 of 23)	B3A|SINE|B2	4937.0	NM_016782	53321.0	Mm.474527	NM_016782	ENSMUSG00000017167	Cntnap1	AI841080|Caspr|NCP1|Nrxn4|p190|shm	contactin associated protein-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-76440060-3	chr11	76439983	76440183	+	849.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346670, intron 15 of 21)	intron (NM_001346670, intron 15 of 21)	28382.0	NM_001291186	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-8677394-1	chr13	8677294	8677494	+	1000.0	f0_balb.idr	intron (NR_110345, intron 4 of 10)	intron (NR_110345, intron 4 of 10)	193650.0	NM_001039389	207615.0	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-31956518-3	chr5	31956415	31956615	+	601.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144541, intron 7 of 11)	intron (NM_144541, intron 7 of 11)	-179957.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-110970360-4	chr8	110970236	110970436	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009179, exon 7 of 7)	3' UTR (NM_009179, exon 7 of 7)	27487.0	NM_007916	13680.0	Mm.287901	NM_007916	ENSMUSG00000015023	Ddx19a	DBP5|Ddx19|Eif4a-rs1	DEAD (Asp-Glu-Ala-Asp) box polypeptide 19a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-100407635-1	chr13	100407535	100407735	+	775.0	f1_balb.idr	TTS (NM_008670)	TTS (NM_008670)	45229.0	NM_008670	17940.0	Mm.6898	NM_008670	ENSMUSG00000021640	Naip1	AV364616|Birc1a|D13Lsd1|Naip|Naip-rs1	NLR family, apoptosis inhibitory protein 1	protein-coding	1.41480915426903	1.56354102348871	2.02779342661579	1.75318555722415	1.97004493983835	2.00559753587831	1.12315983003785	1.76206816610923	0.168325158322848	0.877217419185056	0.998431161219273
Merged-chr6-87518804-4	chr6	87518727	87518927	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037727, intron 1 of 10)	intron (NM_001037727, intron 1 of 10)	14432.0	NM_001037727	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	4.56203358476346	3.25116067856334	3.92718537593983	3.81916153246206	4.12758272288992	2.44039063270419	3.03101616728011	4.59631209380199	-0.217057039150974	0.718971216849155	0.998431161219273
Merged-chr2-32881880-4	chr2	32881718	32881918	+	929.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146119, intron 1 of 13)	intron (NM_146119, intron 1 of 13)	5684.0	NM_146119	227737.0	Mm.301646	NM_146119	ENSMUSG00000026796	Fam129b	9130404D14Rik	family with sequence similarity 129, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98694470-2	chr11	98694370	98694570	+	584.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009439, intron 10 of 11)	intron (NM_009439, intron 10 of 11)	-6843.0	NM_009971	12985.0	Mm.1238	NM_009971	ENSMUSG00000038067	Csf3	Csfg|G-CSF|MGI-IG	colony stimulating factor 3 (granulocyte)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-50171114-2	chr17	50171014	50171214	+	944.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_181397, intron 1 of 9)	intron (NM_181397, intron 1 of 9)	19383.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-81956581-1	chr6	81956481	81956681	+	632.0	f1_balb.idr	intron (NM_177884, intron 15 of 16)	B3|SINE|B2	9368.0	NM_026490	56284.0	Mm.276293	NM_026490	ENSMUSG00000030045	Mrpl19	9030416F12Rik|9130412E02Rik|D6Ertd157e|MRP-L15|RLX1|Rpml15	mitochondrial ribosomal protein L19	protein-coding	2.04336661941203	1.57431763692088	2.55080873549192	3.01423728053773	3.51244205558294	2.92663864917263	2.93513398025518	3.72913876344438	1.64394824241972	0.0269675267988063	0.220206252177004
Merged-chr4-18444879-1	chr4	18444779	18444979	+	584.0	f1_c57bl6.idr	Intergenic	RMER13B|LTR|ERVK	591421.0	NM_019724	17389.0	Mm.187315	NM_019724	ENSMUSG00000028226	Mmp16	MT-MMP 3|MT3-MMP|Mt3mmp	matrix metallopeptidase 16	protein-coding	1.77460173425097	1.72562533982764	0.579279932901125	0.566861420143581	0.751406789020008	1.52051601799493	0.58277861226702	0.569051605384292	-1.34152403022749	0.407325845497287	0.891845785649541
Merged-chr14-54391124-3	chr14	54391016	54391216	+	924.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011405, intron 4 of 11)	L1_Mur3|LINE|L1	18356.0	NM_001253680	20540.0	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	0.718377426555299	1.91544813183669	0.749702284830287	1.49616452713097	1.51380190559148	1.19992355535299	0.974378768672777	0.946914212024031	-0.567608655246347	0.68576353509847	0.996533206832645
Merged-chr6-55019293-2	chr6	55019193	55019393	+	547.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18708.0	NM_180678	353172.0	Mm.250004	NM_180678	ENSMUSG00000029777	Gars	GENA202|Gena201|Nmf249|Sgrp23	glycyl-tRNA synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91928071-2	chr16	91927971	91928171	+	559.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_138597, intron 3 of 6)	intron (NM_138597, intron 3 of 6)	3559.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-23898407-3	chr18	23898308	23898508	+	748.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56280.0	NM_027007	69256.0	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-94400640-2	chr2	94400540	94400740	+	685.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_183106, intron 1 of 24)	MT2B2|LTR|ERVL	6049.0	NM_183106	74569.0	Mm.248504	NM_183106	ENSMUSG00000027194	Ttc17	9130020K17Rik|D2Bwg1005e	tetratricopeptide repeat domain 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-64746855-2	chr1	64746755	64746955	+	617.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9105.0	NM_022721	14367.0	Mm.150813	NM_022721	ENSMUSG00000045005	Fzd5	5330434N09Rik|AI427138|Fz-5|Fz5|mFz5	frizzled class receptor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-100228963-3	chr15	100228852	100229052	+	836.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007497, intron 1 of 6)	intron (NM_007497, intron 1 of 6)	1093.0	NM_007497	11908.0	Mm.676	NM_007497	ENSMUSG00000023027	Atf1	-	activating transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-99216166-5	chr5	99216111	99216311	+	880.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36716.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-5299877-2	chr9	5299777	5299977	+	975.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009807, intron 3 of 9)	intron (NM_009807, intron 3 of 9)	1360.0	NM_009807	12362.0	Mm.1051	NM_009807	ENSMUSG00000025888	Casp1	ICE|Il1bc	caspase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-52078052-2	chr11	52077952	52078152	+	757.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166654, intron 13 of 13)	intron (NM_001166654, intron 13 of 13)	-20772.0	NM_019411	19052.0	Mm.260288	NM_019411	ENSMUSG00000020349	Ppp2ca	PP2A|R75353	protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80419717-2	chr10	80419617	80419817	+	664.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164153, intron 6 of 18)	intron (NM_001164153, intron 6 of 18)	-12896.0	NM_025650	66594.0	Mm.379119	NM_025650	ENSMUSG00000020163	Uqcr11	0710008D09Rik|AL022707|Uqcr	ubiquinol-cytochrome c reductase, complex III subunit XI	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36740425-2	chr18	36740325	36740525	+	894.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028036, intron 9 of 11)	intron (NM_028036, intron 9 of 11)	4162.0	NM_010885	17991.0	Mm.29867	NM_010885	ENSMUSG00000014294	Ndufa2	AV000592|B8|C1-B8|CI-B8	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-71148439-2	chr6	71148339	71148539	+	879.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4059.0	NM_178413	232078.0	Mm.37547	NM_178413	ENSMUSG00000054474	Thnsl2	BC051244|TSH2	threonine synthase-like 2 (bacterial)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-170511322-5	chr2	170511281	170511481	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040367, exon 1 of 3)	non-coding (NR_040367, exon 1 of 3)	151.0	NM_001199902	109054.0	Mm.28808	NM_001013369	ENSMUSG00000052033	Pfdn4	0610025M10Rik|1810063B06Rik|C-1|C1|Pfd4	prefoldin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115668106-2	chr11	115668006	115668206	+	599.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001313936, intron 2 of 5)	intron (NM_001313936, intron 2 of 5)	31428.0	NM_001313937	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-106247302-1	chr9	106247202	106247402	+	921.0	f1_balb.idr	5' UTR (NM_001291835, exon 1 of 11)	5' UTR (NM_001291835, exon 1 of 11)	428.0	NM_001291835	11655.0	Mm.290578	NM_020559	ENSMUSG00000032786	Alas1	ALAS|ALAS-N|Alas-1|Alas-h	aminolevulinic acid synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-8347601-3	chr5	8347500	8347700	+	965.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001007220, intron 2 of 28)	intron (NM_001007220, intron 2 of 28)	20560.0	NM_001007221	11496.0	Mm.275895	NM_001007220	ENSMUSG00000040537	Adam22	2900022I03Rik|AI854032|MDC2	a disintegrin and metallopeptidase domain 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96707798-2	chr3	96707698	96707898	+	770.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_030094, exon 3 of 8)	exon (NM_030094, exon 3 of 8)	762.0	NM_001162925	78373.0	Mm.423186	NM_030094	ENSMUSG00000028100	Nudt17	2410015C20Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5643820-2	chr17	5643720	5643920	+	698.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	151220.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-95686998-2	chr4	95686898	95687098	+	950.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029347, intron 5 of 10)	intron (NM_029347, intron 5 of 10)	107577.0	NM_029347	75578.0	Mm.276098	NM_029347	ENSMUSG00000028573	Fggy	2310009E04Rik	FGGY carbohydrate kinase domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-65583918-4	chr18	65583792	65583992	+	904.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361051, intron 1 of 8)	intron (NM_001361051, intron 1 of 8)	691.0	NM_001361051	328977.0	Mm.286232	NM_207255	ENSMUSG00000042439	Zfp532	C530030I18Rik|Znf532|mKIAA1629	zinc finger protein 532	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80567224-2	chr10	80567124	80567324	+	749.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_078477, exon 2 of 2)	3' UTR (NM_078477, exon 2 of 2)	-5664.0	NM_025852	66932.0	Mm.1116	NM_025852	ENSMUSG00000047417	Rexo1	1700021P10Rik|2610511M11Rik|AW050347|EloA-BP1|Rex1|Tceb3bp1	REX1, RNA exonuclease 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-92003353-2	chr9	92003253	92003453	+	706.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2A|LINE|L1	-189583.0	NM_001195693	100504689.0	Mm.464262	NM_001195693	ENSMUSG00000095654	Plscr5	331000	phospholipid scramblase family, member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-57409413-2	chr14	57409313	57409513	+	641.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR1C|LTR|ERV1	-10930.0	NM_030004	68631.0	Mm.25539	NM_030004	ENSMUSG00000021947	Cryl1	1110025H08Rik|A230106J09Rik|C85932|gul3dh	crystallin, lambda 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-96709220-4	chr15	96709128	96709328	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9500.0	NM_175121	67760.0	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19390823-2	chr7	19390723	19390923	+	868.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007949, intron 15 of 22)	RMER30|DNA|hAT-Charlie	4180.0	NR_030759	100124438.0		NR_030759	ENSMUSG00000076315	Mir343	Mirn343|mmu-mir-343	microRNA 343	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-80331288-4	chr4	80331185	80331385	+	888.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3A|LINE|L1	-502928.0	NM_031202	22178.0	Mm.30438	NM_031202	ENSMUSG00000005994	Tyrp1	Oca3|TRP-1|TRP1|Tyrp|b|brown|isa	tyrosinase-related protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-86804692-4	chr5	86804584	86804784	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177680, intron 1 of 16)	CpG	418.0	NM_001359907	231386.0	Mm.196325	NM_177680	ENSMUSG00000035851	Ythdc1	A730098D12Rik|C80342|mKIAA1966	YTH domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-129097608-4	chr6	129097515	129097715	+	794.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153506, intron 2 of 4)	intron (NM_153506, intron 2 of 4)	3288.0	NM_153506	232409.0	Mm.30870	NM_153506	ENSMUSG00000030155	Clec2e	Clra|clr-a	C-type lectin domain family 2, member e	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-78035248-2	chr9	78035148	78035348	+	826.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-16710.0	NM_008103	14531.0	Mm.1400	NM_008103	ENSMUSG00000023333	Gcm1	GCMa|Gcm-rs2|Gcm1-rs1|glide	glial cells missing homolog 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-27650298-4	chr3	27650213	27650413	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173182, intron 1 of 25)	intron (NM_173182, intron 1 of 25)	60139.0	NM_001356953	72007.0	Mm.38832	NM_173182	ENSMUSG00000039286	Fndc3b	1600019O04Rik|AW550168|Fad104|mKIAA4164	fibronectin type III domain containing 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122627372-4	chr5	122627224	122627424	+	687.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12780.0	NM_009879	12589.0	Mm.10125	NM_009879	ENSMUSG00000029469	Ift81	AW060663|Cdv-1|Cdv-1r|Cdv1	intraflagellar transport 81	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-80739671-4	chr8	80739566	80739766	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053124)	promoter-TSS (NM_053124)	-207.0	NM_053124	93762.0	Mm.246803	NM_053124	ENSMUSG00000031715	Smarca5	4933427E24Rik|D030040M08Rik|D330027N15Rik|MommeD4|Snf2h	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-57358584-4	chr17	57358495	57358695	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355723)	promoter-TSS (NM_001355723)	-91.0	NM_001355723	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-52418090-4	chr10	52417986	52418186	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_030250, exon 1 of 5)	exon (NM_030250, exon 1 of 5)	539.0	NM_030250	52014.0	Mm.199964	NM_030250	ENSMUSG00000023068	Nus1	1600027K07Rik|AU019165|AW538011|BC003223|D10Ertd438e	NUS1 dehydrodolichyl diphosphate synthase subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101673370-4	chr11	101673268	101673468	+	883.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7827.0	NM_025404	80981.0	Mm.266840	NM_025404	ENSMUSG00000034936	Arl4d	1110036H21Rik|ARL6|AW456149|Arf4l|Arfl4|Arl5	ADP-ribosylation factor-like 4D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-22399478-3	chr16	22399369	22399569	+	772.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358428, intron 8 of 12)	intron (NM_001358428, intron 8 of 12)	38899.0	NM_001358428	104156.0	Mm.155708	NM_023794	ENSMUSG00000013089	Etv5	1110005E01Rik|8430401F14Rik|ERM	ets variant 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-95575109-4	chr9	95575013	95575213	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15296.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-73385333-4	chr14	73385245	73385445	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008410)	promoter-TSS (NM_008410)	-56.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117519784-1	chr8	117519684	117519884	+	1000.0	f1_c57bl6.idr	intron (NM_172285, intron 2 of 32)	intron (NM_172285, intron 2 of 32)	21509.0	NM_172285	234779.0	Mm.192699	NM_172285	ENSMUSG00000034330	Plcg2	PLC-gamma-2|PLCgamma2|Plcg-2	phospholipase C, gamma 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-87303048-2	chr17	87302948	87303148	+	807.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028639, intron 3 of 19)	B3|SINE|B2	20162.0	NM_028639	225049.0	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-83892019-4	chr7	83891922	83892122	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023403)	promoter-TSS (NM_023403)	22.0	NM_023403	67943.0	Mm.117365	NM_023403	ENSMUSG00000038503	Mesd	2210015O11Rik|AW537813|Mesdc2|mKIAA0081|mesd|msd	mesoderm development LRP chaperone	protein-coding	6.72047116851799	7.05945564941057	6.48950224053537	7.03474338884364	6.69087334799522	6.63587680771003	6.89079251781434	6.83765712688617	-0.0797754198897675	0.675173647594499	0.99440487726309
Merged-chr9-21798052-2	chr9	21797952	21798152	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145611, intron 1 of 11)	intron (NM_145611, intron 1 of 11)	494.0	NM_145611	235041.0	Mm.257371	NM_145611	ENSMUSG00000032194	Kank2	AI504612|Ankrd25|BC010245	KN motif and ankyrin repeat domains 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-60660097-3	chr13	60659998	60660198	+	851.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	57887.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-137873522-2	chr4	137873406	137873606	+	721.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_199307, intron 1 of 19)	intron (NM_199307, intron 1 of 19)	11269.0	NM_199307	230857.0	Mm.401062	NM_199307	ENSMUSG00000057530	Ece1	AW322500|ECE-1|ECE-1a|ECE-1b|ECE-1d	endothelin converting enzyme 1	protein-coding	0.211119627008455	0.242486288732132	0.232402529345571	0.428299110527984	0.683397621220987	0.678207163672536	0.234641897133697	1.54562891829003	3.7928220925554	0.0411729326852639	1
Merged-chr19-12469001-4	chr19	12468895	12469095	+	950.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172442, exon 9 of 9)	3' UTR (NM_172442, exon 9 of 9)	8216.0	NM_010821	17476.0	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	1.27308648557921	1.14861338745592	2.26231280652988	1.90611049462198	2.01275020280407	2.04972686566676	1.85531777851126	1.51044410464638	0.374209094558576	0.731659386874205	0.998431161219273
Merged-chr16-3744038-4	chr16	3743931	3744131	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_148924)	promoter-TSS (NM_148924)	-68.0	NM_148924	74120.0	Mm.29081	NM_148924	ENSMUSG00000022529	Zfp263	1200014J04Rik|AI326880|AU020888|NT2|mFPM315	zinc finger protein 263	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-35540696-2	chr8	35540586	35540786	+	1000.0	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45153.0	NM_026067	67276.0	Mm.207534	NM_026067	ENSMUSG00000031527	Eri1	3'hexo|3110010F15Rik|Thex1|eri-1	exoribonuclease 1	protein-coding	4.95291771141509	5.14839323642723	5.22845353532506	5.25242619129256	2.35478312830628	3.22660406113891	1.64116089284784	1.5577830100427	-4.05432539649061	1.58104055719736e-12	5.08106909069301e-10
Merged-chr13-37680017-2	chr13	37679917	37680117	+	629.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-146021.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45866208-4	chr7	45866121	45866321	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008172, exon 1 of 12)	exon (NM_008172, exon 1 of 12)	460.0	NM_008172	14814.0	Mm.322594	NM_008172	ENSMUSG00000002771	Grin2d	GluN2D|NMDAR2D|NR2D	glutamate receptor, ionotropic, NMDA2D (epsilon 4)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-9425911-2	chr6	9425811	9426011	+	704.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	475892.0	NM_008751	18231.0	Mm.46954	NM_008751	ENSMUSG00000046178	Nxph1	C130005L03Rik	neurexophilin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-45342650-2	chr6	45342550	45342750	+	746.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001004357, intron 1 of 23)	intron (NM_001004357, intron 1 of 23)	282589.0	NM_001004357	66797.0	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-27928561-2	chr15	27928461	27928661	+	724.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081302, intron 1 of 56)	intron (NM_001081302, intron 1 of 56)	97287.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45461007-4	chr7	45460909	45461109	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_007527)	TTS (NM_007527)	-1123.0	NM_010240	14325.0	Mm.30357	NM_010240	ENSMUSG00000050708	Ftl1	Ftl|Ftl-1|L-ferritin	ferritin light polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-104937918-4	chr3	104937842	104938042	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	23767.0	NM_009520	22414.0	Mm.10740	NM_009520	ENSMUSG00000027840	Wnt2b	Wnt13	wingless-type MMTV integration site family, member 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31429074-2	chr14	31428974	31429174	+	904.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011894, intron 2 of 8)	intron (NM_011894, intron 2 of 8)	7026.0	NM_011894	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-8195823-4	chr17	8195702	8195902	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001197046, exon 13 of 13)	3' UTR (NM_001197046, exon 13 of 13)	30284.0	NM_201230	75296.0	Mm.227250	NM_201230	ENSMUSG00000069135	Fgfr1op	4930553O10Rik|FOP	Fgfr1 oncogene partner	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-62828902-4	chr9	62828789	62828989	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9898.0	NM_001033175	76524.0	Mm.283636	NM_001033175	ENSMUSG00000032245	Cln6	1810065L06Rik|AW743417|D9Bwg1455e|nclf	ceroid-lipofuscinosis, neuronal 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-14115733-1	chr10	14115633	14115833	+	884.0	f1_c57bl6.idr	intron (NM_001358783, intron 4 of 12)	intron (NM_001358783, intron 4 of 12)	149354.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-61367805-3	chr9	61367713	61367913	+	952.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4553.0	NM_001083928	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120741219-4	chr8	120741103	120741303	+	948.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301811, intron 2 of 8)	intron (NM_001301811, intron 2 of 8)	2564.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-87227055-4	chr3	87226963	87227163	+	644.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	36461.0	NM_030707	80891.0	Mm.45173	NM_030707	ENSMUSG00000015852	Fcrls	2810439C17Rik|9330158F12|FcRH2sc|Fcrh2|IFGP2|IgSR|MMAN-g|Msr2|moFcRH2sc	Fc receptor-like S, scavenger receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-41447378-4	chr15	41447267	41447467	+	932.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358978)	promoter-TSS (NM_001358978)	-115.0	NR_152565	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-38291616-2	chr15	38291516	38291716	+	624.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001289471, exon 5 of 5)	3' UTR (NM_001289471, exon 5 of 5)	8284.0	NM_001357677	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-149309464-4	chr4	149309365	149309565	+	851.662476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(GGA)n|Simple_repeat|Simple_repeat	-1732.0	NM_001290995	16561.0	Mm.402393	NM_008441	ENSMUSG00000063077	Kif1b	A530096N05Rik|AI448212|AI506502|D4Mil1e|KIF1Bp130|KIF1Bp204	kinesin family member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-46216705-2	chr9	46216605	46216805	+	861.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027498, intron 21 of 24)	RSINE1|SINE|B4	-11925.0	NM_009692	11806.0	Mm.26743	NM_009692	ENSMUSG00000032083	Apoa1	Alp-1|Apoa-1|Brp-14|Ltw-1|Lvtw-1|Sep-1|Sep-2|Sep2|apo-AI|apoA-I	apolipoprotein A-I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-163438558-3	chr2	163438377	163438577	+	839.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144891)	promoter-TSS (NM_144891)	1.0	NR_153379	228858.0	Mm.102080	NM_144891	ENSMUSG00000017943	Gdap1l1	Gdap1l	ganglioside-induced differentiation-associated protein 1-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25223087-2	chr7	25222987	25223187	+	633.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175436, intron 1 of 2)	B1_Mur4|SINE|Alu	1662.0	NM_175436	210172.0	Mm.129371	NM_175436	ENSMUSG00000046541	Zfp526	D030024H03Rik|Znf526	zinc finger protein 526	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-5465044-1	chr11	5464944	5465144	+	611.0	f1_c57bl6.idr	Intergenic	Intergenic	-20197.0	NM_001080924	407821.0	Mm.216313	NM_001080924	ENSMUSG00000041961	Znrf3	Gm1167	zinc and ring finger 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-38190353-1	chr7	38190253	38190453	+	557.5	f1_balb.idr	intron (NM_001085385, intron 2 of 3)	intron (NM_001085385, intron 2 of 3)	6566.0	NM_028166	72244.0	Mm.187554	NM_028166		1600014C10Rik	AI428873	RIKEN cDNA 1600014C10 gene	protein-coding	-1.84456824087626	-1.81369603968745	-1.82303204814395	-1.83070092346192	-1.84240106943552	-1.51787681909439	-1.82091858046888	-1.82932819844659	1.64481029852639	0.639921510788462	1
Merged-chr6-124662184-2	chr6	124662084	124662284	+	578.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145130)	promoter-TSS (NM_145130)	-920.0	NR_149320	14792.0	Mm.273915	NM_145130	ENSMUSG00000004270	Lpcat3	C3f|Grcc3f|Lpcat|Lpeat|Lplat5|Lpsat|Mboat5|Moact5|Oact5|PTG	lysophosphatidylcholine acyltransferase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-79534353-3	chr12	79534253	79534453	+	623.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	237002.0	NM_001252562	19363.0	Mm.341756	NM_009014	ENSMUSG00000059060	Rad51b	AI553500|R51H2|Rad51l1|mREC2	RAD51 paralog B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-95397366-4	chr1	95397259	95397459	+	694.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	83731.0	NM_026321	67698.0	Mm.272705	NM_026321	ENSMUSG00000051185	Fam174a	2310044D20Rik|Fam174|Naa6|Tmem157	family with sequence similarity 174, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36275866-2	chr1	36275766	36275966	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-2441.0	NM_153408	214854.0	Mm.389110	NM_153408	ENSMUSG00000047180	Neurl3	2010300P06Rik|Lincr	neuralized E3 ubiquitin protein ligase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19279044-3	chr7	19278883	19279083	+	793.722229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177691, intron 1 of 4)	intron (NM_177691, intron 1 of 4)	1066.0	NM_177691	232941.0	Mm.134068	NM_177691	ENSMUSG00000030402	Ppm1n	A930002H20|C79127	protein phosphatase, Mg2+/Mn2+ dependent, 1N (putative)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47244419-3	chr17	47244311	47244511	+	653.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001097623, intron 4 of 19)	ID_B1|SINE|B4	14181.0	NM_172622	224829.0	Mm.260989	NM_172622		Trerf1	9430096I18Rik|AI429294|B830015H24|RAPA|Trep-132|Trep132	transcriptional regulating factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100433511-2	chr7	100433411	100433611	+	776.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001017985, intron 23 of 32)	intron (NM_001017985, intron 23 of 32)	-39480.0	NM_009464	22229.0	Mm.6254	NM_009464	ENSMUSG00000032942	Ucp3	AI645527|Slc25a9|UCP-3	uncoupling protein 3 (mitochondrial, proton carrier)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-25530559-4	chr14	25530469	25530669	+	962.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 2 of 23)	intron (NM_183208, intron 2 of 23)	-3870.0	NR_037236	100526533.0		NR_037236	ENSMUSG00000093081	Mir3075	mir-3075|mmu-mir-3075	microRNA 3075	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-26814084-4	chr14	26813966	26814166	+	963.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-80538.0	NM_001170748	142687.0	Mm.138259	NM_080856	ENSMUSG00000021898	Asb14	Asb-14	ankyrin repeat and SOCS box-containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41304051-2	chr19	41303963	41304163	+	805.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 9 of 16)	L2b|LINE|L2	-40059.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	-0.248537362314019	-0.484004453295318	-0.323478140483726	-0.489763325581789	-0.358936836844643	-0.483267163630017	-0.486546029193636	0.0119616161640287	0.815060182256655	0.741160489651108	1
Merged-chr6-91515923-4	chr6	91515831	91516031	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026309)	promoter-TSS (NM_026309)	-43.0	NM_009531	22591.0	Mm.2806	NM_009531	ENSMUSG00000030094	Xpc	-	xeroderma pigmentosum, complementation group C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-121744048-10	chr11	121743966	121744166	+	961.633301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41639.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-97185363-2	chr3	97185263	97185463	+	782.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26586.0	NM_019800	66659.0	Mm.101368	NM_019800	ENSMUSG00000028093	Acp6	5730559A09Rik|ACPL1|AU022842|mPACPL1	acid phosphatase 6, lysophosphatidic	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135667007-4	chr5	135666897	135667097	+	967.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-22148.0	NM_008898	18984.0	Mm.3863	NM_008898	ENSMUSG00000005514	Por	4933424M13Rik|CPR|CYPOR|P450R	P450 (cytochrome) oxidoreductase	protein-coding	1.8790073794631	1.68315129345585	3.12174293321378	2.56770535376827	2.05961385943828	1.69703945921802	4.03716135267707	2.58229115464622	0.899786170970861	0.316685207053425	0.819851169756118
Merged-chr17-50237532-4	chr17	50237433	50237633	+	830.104187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1675.0	NR_131975	446210.0	Mm.378184	NM_001004437	ENSMUSG00000067103	AY702103	STDP2	cDNA sequence AY702103	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-86886611-4	chr10	86886536	86886736	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138673, intron 42 of 68)	intron (NM_138673, intron 42 of 68)	107631.0	NM_175331	103466.0	Mm.200446	NM_175331	ENSMUSG00000054027	Nt5dc3	AU040402|AW540062|C630002B14Rik|TU12B1-TY	5'-nucleotidase domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-33110964-4	chr12	33110843	33111043	+	948.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_015602)	TTS (NR_015602)	-18068.0	NM_001024478	68764.0	Mm.60083	NM_001024478	ENSMUSG00000035860	Cdhr3	1110049B09Rik|BB172694|Cdh28	cadherin-related family member 3	protein-coding	-1.20406370813143	-1.56956373024278	-1.57884638916872	-1.58647144159385	-1.598104728449	-1.56755213932999	-1.57674499865798	-1.58510656085539	-1.70745470802464	0.626337835847419	1
Merged-chr11-69413653-2	chr11	69413628	69413828	+	920.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001017426)	promoter-TSS (NM_001017426)	-53.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	0.101597431744742	0.457995680570564	-0.0272132798664353	0.582531331080041	-0.0365597827968618	-0.0210467702531511	-0.0261042908552324	0.269364390342787	-2.15106610023403	0.322761590335005	1
Merged-chr17-35837686-4	chr17	35837579	35837779	+	910.133301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011655, intron 1 of 3)	intron (NM_011655, intron 1 of 3)	622.0	NM_011655	22154.0	Mm.273538	NM_011655	ENSMUSG00000001525	Tubb5	AA408537|AI596182|B130022C14Rik|M(beta)5	tubulin, beta 5 class I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-34459712-4	chr1	34459617	34459817	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011206)	promoter-TSS (NM_011206)	-29.0	NM_011206	19253.0	Mm.361	NM_011206	ENSMUSG00000026126	Ptpn18	FLP1|HSCF|PTP-HSCF|PTP-K1|Ptpk1	protein tyrosine phosphatase, non-receptor type 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-76405480-5	chr12	76405294	76405494	+	881.783325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008301, exon 1 of 1)	exon (NM_008301, exon 1 of 1)	1024.0	NM_008301	15512.0	Mm.296181	NM_008301	ENSMUSG00000059970	Hspa2	70kDa|HSP70.2|HSP70A2|Hsp70-2	heat shock protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105300523-2	chr8	105300423	105300623	+	607.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_148952, exon 6 of 10)	exon (NM_148952, exon 6 of 10)	2860.0	NM_148952	104394.0	Mm.34554	NM_148952	ENSMUSG00000014859	E2f4	2010111M04Rik|AI427446	E2F transcription factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-20401796-4	chr16	20401683	20401883	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176839, intron 6 of 6)	intron (NM_176839, intron 6 of 6)	24611.0	NM_013790	27416.0	Mm.20845	NM_013790	ENSMUSG00000022822	Abcc5	2900011L11Rik|AI132311|Abcc5a|Abcc5b|Mrp5	ATP-binding cassette, sub-family C (CFTR/MRP), member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-59317597-4	chr1	59317500	59317700	+	977.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356389, intron 10 of 13)	intron (NM_001356389, intron 10 of 13)	60694.0	NM_001356389	271697.0	Mm.297713	NM_001033373	ENSMUSG00000026023	Cdk15	Als2cr7|Pftk2	cyclin-dependent kinase 15	protein-coding	-0.539072095141396	-1.17607782048307	-1.18720726126045	-1.19634931528472	-1.20196491063698	-1.17366602423904	-1.18468779981884	-1.19471289198531	-2.68787187143179	0.435473844436726	1
Merged-chr8-84744021-2	chr8	84743921	84744121	+	852.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081982, intron 2 of 9)	intron (NM_001081982, intron 2 of 9)	30348.0	NM_001081981	18032.0	Mm.9394	NM_010906	ENSMUSG00000001911	Nfix	CTF|NF-I/X|NF1-X|NFI-X	nuclear factor I/X	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-68509332-3	chr11	68509215	68509415	+	730.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004435, intron 1 of 19)	PB1D10|SINE|Alu	6296.0	NR_126154	104709.0	Mm.234573	NM_001004435	ENSMUSG00000046207	Pik3r6	BB220380|p84|p84 PIKAP|p87(PIKAP)|p87PIKAP	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-32764950-4	chr12	32764855	32765055	+	938.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55380.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-139219265-4	chr7	139219168	139219368	+	969.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001143755, intron 4 of 8)	intron (NM_001143755, intron 4 of 8)	-5961.0	NM_001162540	57740.0	Mm.65336	NM_021302	ENSMUSG00000015981	Stk32c	PKE|Pkek|YANK3	serine/threonine kinase 32C	protein-coding	4.17268513160529	4.36717649150423	4.22789919936298	4.51989108753319	4.25202522119847	4.67133748966703	4.42902909916612	4.40300921410835	0.149077842315597	0.69728940124498	0.998021103404319
Merged-chr13-73769202-2	chr13	73769102	73769302	+	618.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360694, intron 1 of 24)	intron (NM_001360694, intron 1 of 24)	5505.0	NM_011390	20499.0	Mm.275800	NM_011390	ENSMUSG00000017756	Slc12a7	AA408796|D13Ertd261e|Kcc4	solute carrier family 12, member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-58604779-4	chr15	58604673	58604873	+	932.18335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	189305.0	NM_145959	210998.0	Mm.3224	NM_145959	ENSMUSG00000037119	Fam91a1	AV220772|BC033609|D15Ertd621e|SKIN|mKIAA0493	family with sequence similarity 91, member A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-105990435-4	chr11	105990351	105990551	+	969.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_207624)	TTS (NM_207624)	-4224.0	NM_001101453	217246.0	Mm.296699	NM_001101453	ENSMUSG00000101605	Ace3	EG217246	angiotensin I converting enzyme (peptidyl-dipeptidase A) 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-17612447-3	chr6	17612345	17612545	+	962.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-24565.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30959071-2	chr7	30958958	30959158	+	885.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164184, intron 5 of 8)	intron (NM_001164184, intron 5 of 8)	-2255.0	NM_011680	22282.0	Mm.322453	NM_011680	ENSMUSG00000058239	Usf2	Usf-2|bHLHb12	upstream transcription factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-75881729-2	chr7	75881629	75881829	+	713.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33391.0	NM_029652	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-28487046-4	chr6	28486948	28487148	+	954.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019776, intron 1 of 23)	intron (NM_019776, intron 1 of 23)	6700.0	NM_019776	56463.0	Mm.439987	NM_019776	ENSMUSG00000001424	Snd1	AL033314|Tudor-SN	staphylococcal nuclease and tudor domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-50763343-4	chr16	50763254	50763454	+	911.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB2|LINE|L1	-20055.0	NR_131006	78639.0	Mm.160109	NR_131005	ENSMUSG00000092276	1700116B05Rik	-	RIKEN cDNA 1700116B05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132977586-2	chr4	132977486	132977686	+	581.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010208, intron 1 of 12)	intron (NM_010208, intron 1 of 12)	3491.0	NM_010208	14191.0	Mm.271665	NM_010208	ENSMUSG00000028874	Fgr	-	FGR proto-oncogene, Src family tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-67430069-4	chr3	67429911	67430111	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138591)	promoter-TSS (NM_138591)	-104.0	NM_138591	28030.0	Mm.122466	NM_138591	ENSMUSG00000027774	Gfm1	AW545374|D3Wsu133e|Gfm	G elongation factor, mitochondrial 1	protein-coding	2.3813983527673	2.11981930082467	1.52130531180106	1.48465309890381	2.31895504926267	2.86396950427946	2.19638409812394	1.6880660438075	0.947212666083297	0.31917833383665	0.821951596143819
Merged-chr6-29697291-2	chr6	29697191	29697391	+	766.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301407, intron 1 of 7)	intron (NM_001301407, intron 1 of 7)	3077.0	NM_146173	232670.0	Mm.225289	NM_146173	ENSMUSG00000001763	Tspan33	1300010A20Rik|Pen	tetraspanin 33	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-38998108-4	chr2	38998037	38998237	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029687)	promoter-TSS (NM_029687)	-172.0	NM_029687	76646.0	Mm.358777	NM_029687	ENSMUSG00000035295	Wdr38	1700123D08Rik	WD repeat domain 38	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-132658113-1	chr7	132658013	132658213	+	608.0	f0_balb.idr	intron (NM_029609, intron 6 of 6)	intron (NM_029609, intron 6 of 6)	47470.0	NM_029609	76429.0	Mm.276721	NM_029609	ENSMUSG00000030946	Lhpp	2310007H09Rik	phospholysine phosphohistidine inorganic pyrophosphate phosphatase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-17647051-2	chr16	17646951	17647151	+	553.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166164, intron 1 of 7)	intron (NM_001166164, intron 1 of 7)	581.0	NM_001166164	72315.0	Mm.297777	NM_001166164	ENSMUSG00000041617	Ccdc74a	2310015A05Rik	coiled-coil domain containing 74A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-20112311-2	chr14	20112211	20112411	+	799.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29139.0	NM_026209	67509.0	Mm.292423	NM_026209	ENSMUSG00000045107	Saysd1	1810063B07Rik|4930488P03Rik	SAYSVFN motif domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-73847967-2	chr18	73847867	73848067	+	934.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11418.0	NM_027741	71263.0	Mm.126220	NM_027741	ENSMUSG00000064036	Mro	4930507C04Rik|4933435E20Rik	maestro	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-39451134-1	chr6	39451034	39451234	+	544.0	f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	30756.0	NR_152168	621427.0	Mm.389742	NR_152168	ENSMUSG00000068601	Gm10244	Anmkrn1	predicted gene 10244	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16305464-1	chr7	16305364	16305564	+	1000.0	f1_balb.idr	Intergenic	Intergenic	-4119.0	NM_133234	170770.0	Mm.7660	NM_133234	ENSMUSG00000002083	Bbc3	PUMA|PUMA/JFY1	BCL2 binding component 3	protein-coding	0.652504280934627	0.764973265093926	1.26504177793839	0.700531521022447	0.775224305770559	0.397685323842004	0.389710850834567	0.382871767985471	-2.30978070510368	0.186655752842196	1
Merged-chr15-5446582-4	chr15	5446483	5446683	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49735.0	NR_045274	71432.0	Mm.291087	NR_045274	ENSMUSG00000110018	5430437J10Rik	-	RIKEN cDNA 5430437J10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-88725562-4	chr4	88725427	88725627	+	675.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3019.0	NM_172871	242521.0	Mm.260601	NM_172871	ENSMUSG00000070923	Klhl9	8030469P05|C530050O22Rik|mKIAA1354	kelch-like 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-11954514-1	chr19	11954414	11954614	+	567.0	f0_balb.idr	Intergenic	Intergenic	-11330.0	NM_001033174	76303.0	Mm.291279	NM_001033174	ENSMUSG00000024687	Osbp	1110018F06Rik|AW559088|mKIAA4220	oxysterol binding protein	protein-coding	1.76003460191482	1.29905274655025	2.3158080511234	1.48445702114001	2.42322686186517	1.99122413116688	2.86852059288966	2.63185472788457	1.80018047745432	0.0579632970859469	0.356207967075077
Merged-chr8-106394581-4	chr8	106394490	106394690	+	940.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20749.0	NM_011764	22751.0	Mm.295582	NM_011764	ENSMUSG00000031907	Zfp90	6430515L01Rik|KRAB17|NK10|Zfp64|Zfp83|mKIAA1954	zinc finger protein 90	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-94206084-4	chr16	94205995	94206195	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360045, intron 6 of 10)	intron (NM_001360045, intron 6 of 10)	84196.0	NM_001360045	110948.0	Mm.30921	NM_139145	ENSMUSG00000040820	Hlcs	410I21.SP6|D16Jhu34	holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-60619816-4	chr13	60619725	60619925	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	17614.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-93011122-7	chr1	93010994	93011194	+	911.0476070000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159658, intron 2 of 2)	MER115|DNA|hAT-Tip100	4760.0	NM_177587	208760.0	Mm.235537	NM_177587	ENSMUSG00000045091	Aqp12	AB084104|mAQP12	aquaporin 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-95449943-4	chr1	95449854	95450054	+	856.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	136326.0	NM_026321	67698.0	Mm.272705	NM_026321	ENSMUSG00000051185	Fam174a	2310044D20Rik|Fam174|Naa6|Tmem157	family with sequence similarity 174, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-109480793-4	chr3	109480695	109480895	+	827.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020505, intron 2 of 26)	intron (NM_020505, intron 2 of 26)	-93212.0	NM_146139	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	1.63778814061744	1.62307949268089	1.73976217726793	0.802466541783191	0.566144366211902	0.614373633754759	0.599125317432812	0.585785698067706	-4.98715610841764	0.0017611196455299	0.03047583678904
Merged-chr7-79877961-3	chr7	79877860	79878060	+	749.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009682, exon 6 of 6)	3' UTR (NM_009682, exon 6 of 6)	-29750.0	NM_008486	16790.0	Mm.4487	NM_008486	ENSMUSG00000039062	Anpep	AP-M|AP-N|Apn|Cd13|P150	alanyl (membrane) aminopeptidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-12089052-2	chr9	12088952	12089152	+	849.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	1016803.0	NR_040755	78219.0	Mm.414868	NR_040755	ENSMUSG00000111830	4930568E12Rik	-	RIKEN cDNA 4930568E12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-99175344-1	chr4	99175244	99175444	+	705.0	f0_balb.idr	Intergenic	Intergenic	-18590.0	NM_175029	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	0.992639526724909	1.89042787562704	1.82301405924543	1.65715286324195	1.46769098779309	1.90531327627661	1.25275607091144	1.5386945379337	-0.250581205780643	0.828949335095166	0.998431161219273
Merged-chr1-157077246-4	chr1	157077182	157077382	+	884.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31368.0	NM_001305059	73435.0	Mm.116705	NM_028540	ENSMUSG00000026592	Tex35	1700057K13Rik	testis expressed 35	protein-coding	3.0177634580499	4.43481788269799	3.77822241882352	2.48409571874245	4.61421632257885	4.3525783405424	4.02768466021269	4.96987505779183	1.23449626129511	0.0192203100751267	0.175161379509736
Merged-chr12-112616315-2	chr12	112616215	112616415	+	818.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_198411)	TTS (NM_198411)	-3732.0	NM_007421	11565.0	Mm.3440	NM_007421	ENSMUSG00000011148	Adssl1	AI528595|Adss|Adss1	adenylosuccinate synthetase like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36357340-4	chr1	36357248	36357448	+	981.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172652, intron 5 of 20)	intron (NM_172652, intron 5 of 20)	-8590.0	NR_105863	102465541.0		NR_105863	ENSMUSG00000098680	Mir6898	Gm27816|mmu-mir-6898	microRNA 6898	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-35978759-4	chr2	35978670	35978870	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029774, intron 1 of 9)	intron (NM_029774, intron 1 of 9)	854.0	NM_029774	74410.0	Mm.21591	NM_028921	ENSMUSG00000026885	Ttll11	4932702F08Rik|4933424A20Rik|AU043211|D2Ertd624e	tubulin tyrosine ligase-like family, member 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-58259396-2	chr15	58259296	58259496	+	613.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44504.0	NM_026346	67731.0	Mm.25683	NM_026346	ENSMUSG00000022358	Fbxo32	4833442G10Rik|AI430017|ATROGIN1|Gm20361|MAFbx	F-box protein 32	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-31097198-4	chr8	31097102	31097302	+	921.758301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001357223)	TTS (NM_001357223)	5552.0	NM_001357223	66959.0	Mm.23916	NM_025869	ENSMUSG00000039661	Dusp26	2310043K02Rik|Skrp3	dual specificity phosphatase 26 (putative)	protein-coding	3.29242380502689	3.45060846830886	1.65952675910364	3.76482462543551	3.10140589263925	2.94933400342001	3.07989809769278	3.67198835651463	-0.0263338868846376	0.969896938651579	0.998431161219273
Merged-chr11-29526323-4	chr11	29526186	29526386	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133767)	promoter-TSS (NM_133767)	-111.0	NM_001282120	76784.0	Mm.285429	NM_133767	ENSMUSG00000020459	Mtif2	2310038D14Rik|2410112O06Rik|IF-2(Mt)|IF-2mt|IF2(mt)	mitochondrial translational initiation factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-97158757-4	chr3	97158664	97158864	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019800)	promoter-TSS (NM_019800)	-13.0	NM_019800	66659.0	Mm.101368	NM_019800	ENSMUSG00000028093	Acp6	5730559A09Rik|ACPL1|AU022842|mPACPL1	acid phosphatase 6, lysophosphatidic	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-68726649-2	chr10	68726549	68726749	+	820.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177794, intron 1 of 5)	intron (NM_177794, intron 1 of 5)	2903.0	NM_177794	327766.0	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-55117946-2	chr6	55117846	55118046	+	663.833313	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001288619)	promoter-TSS (NM_001288619)	-33.0	NM_001288620	12922.0	Mm.236081	NM_009953	ENSMUSG00000003476	Crhr2	CRF-R2|CRFR2alpha|CRFR2beta|Crfr2	corticotropin releasing hormone receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-113877609-4	chr13	113877486	113877686	+	891.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172595, intron 1 of 4)	intron (NM_172595, intron 1 of 4)	83078.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-80205447-2	chr18	80205347	80205547	+	735.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-1351.0	NM_001038608	27366.0	Mm.172411	NM_025299	ENSMUSG00000057130	Txnl4a	D18Wsu98e|Dim1|Txnl4|U5-15kD|U5-15kDa	thioredoxin-like 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-26526386-4	chr14	26526292	26526492	+	784.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310445, intron 1 of 22)	intron (NM_001310445, intron 1 of 22)	8232.0	NM_032008	83997.0	Mm.36769	NM_032008	ENSMUSG00000021870	Slmap	D330001L02Rik|Miranda|Slap|mKIAA1601	sarcolemma associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-121595495-2	chr3	121595395	121595595	+	927.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47990.0	NR_036456	100503044.0	Mm.65320	NM_176992	ENSMUSG00000044522	A730020M07Rik	-	RIKEN cDNA A730020M07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-97155302-4	chr7	97155186	97155386	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162477, intron 1 of 9)	intron (NM_001162477, intron 1 of 9)	73535.0	NM_010248	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	3.53088665620097	4.72858437613764	2.56877953065204	4.10019433056879	3.63062108114757	4.06587943529599	3.7053034210708	4.64480688316201	0.176037141657306	0.752882987492757	0.998431161219273
Merged-chr7-31110152-2	chr7	31110052	31110252	+	761.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008281, intron 2 of 12)	intron (NM_008281, intron 2 of 12)	845.0	NM_001276269	15451.0	Mm.19182	NM_008281	ENSMUSG00000001249	Hpn	Hlb320	hepsin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81997369-4	chr10	81997263	81997463	+	993.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-50760.0	NM_001319203	408062.0	Mm.391409	NM_001024626	ENSMUSG00000061371	Zfp873	-	zinc finger protein 873	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85288638-4	chr12	85288532	85288732	+	977.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172414)	promoter-TSS (NM_172414)	41.0	NM_172414	72350.0	Mm.158810	NM_172414	ENSMUSG00000045064	Zc2hc1c	2810002I04Rik|AV046379|Fam164c	zinc finger, C2HC-type containing 1C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-101948427-2	chr5	101948324	101948524	+	772.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 10 of 66)	intron (NM_172882, intron 10 of 66)	121497.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43519628-2	chr4	43519528	43519728	+	589.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_009416, exon 3 of 9)	exon (NM_009416, exon 3 of 9)	3926.0	NM_009416	22004.0	Mm.646	NM_009416	ENSMUSG00000028464	Tpm2	Tpm-2|Trop-2	tropomyosin 2, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118103061-4	chr11	118102968	118103168	+	990.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167746, intron 20 of 80)	intron (NM_001167746, intron 20 of 80)	26151.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-62933810-4	chr5	62933691	62933891	+	839.158325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	119968.0	NM_001170705	100322896.0	Mm.479821	NM_001170705	ENSMUSG00000090326	Dthd1	Gm17384	death domain containing 1	protein-coding	-1.13129152895393	-0.760314410582534	-1.11939102144509	-1.12796902636669	-1.1307976245896	-0.753160406462703	-1.11683883442949	-1.12699414366937	0.0387695613834025	0.99058038935327	1
Merged-chr8-120682882-4	chr8	120682794	120682994	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14574.0	NM_001293559	12857.0	Mm.386758	NM_009941	ENSMUSG00000031818	Cox4i1	AL024441|COX|COX IV-1|COXIV|Cox4|Cox4a|IV-1	cytochrome c oxidase subunit 4I1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-38633684-4	chr15	38633536	38633736	+	847.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR23|LTR|ERV1	-28268.0	NM_025494	66335.0	Mm.276618	NM_025494	ENSMUSG00000022295	Atp6v1c1	1700025B18Rik|U13839	ATPase, H+ transporting, lysosomal V1 subunit C1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-79918243-2	chr10	79918143	79918343	+	822.833374	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_053244, exon 1 of 5)	5' UTR (NM_053244, exon 1 of 5)	1272.0	NM_053244	114229.0	Mm.191035	NM_053244	ENSMUSG00000035773	Kiss1r	Gpr54|KiSS-1|kiSS-1R	KISS1 receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3064823-2	chr4	3064723	3064923	+	546.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CAGTA)n|Simple_repeat|Simple_repeat	-107260.0	NM_001167534	100312470.0	Mm.480297	NM_001167534	ENSMUSG00000115072	Vmn1r2	Gm11776	vomeronasal 1 receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24736517-4	chr17	24736422	24736622	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346668)	promoter-TSS (NM_001346668)	-71.0	NM_013759	27361.0	Mm.28212	NM_013759	ENSMUSG00000075705	Msrb1	D17Wsu82e|SELX|SelR|Sepr|Sepx1	methionine sulfoxide reductase B1	protein-coding	5.78338919287236	5.64390354096875	5.97355826006955	6.23002836299771	6.06677427748244	6.11121150638605	4.88985665209362	6.08989548588564	-0.0572627403376579	0.842584158406334	0.998431161219273
Merged-chr6-47354269-3	chr6	47354177	47354377	+	896.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-99455.0	NM_001355551	26965.0	Mm.87611	NM_012042	ENSMUSG00000029686	Cul1	Cul-1	cullin 1	protein-coding	-1.8429182434137	-1.8129848525291	-1.82203695700074	-1.54461076807193	-1.84081697472045	-1.81102322372834	-1.81998775896484	-1.82814164409203	-1.43114970378833	0.684630132144154	1
Merged-chr11-106145674-2	chr11	106145574	106145774	+	796.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011947, intron 7 of 15)	intron (NM_011947, intron 7 of 15)	14253.0	NM_001356459	67803.0	Mm.21687	NM_172397	ENSMUSG00000040699	Limd2	0610025L06Rik|AI413966	LIM domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-168050107-2	chr2	168050007	168050207	+	780.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-30897.0	NM_021409	58220.0	Mm.292834	NM_021409	ENSMUSG00000044641	Pard6b	AV025615|Par6b	par-6 family cell polarity regulator beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-119412194-2	chr8	119412094	119412294	+	746.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17302.0	NM_019966	56690.0	Mm.423037	NM_019966	ENSMUSG00000074064	Mlycd	AI324784|Mcd	malonyl-CoA decarboxylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-78308239-2	chr17	78308139	78308339	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_015800, intron 5 of 16)	intron (NM_015800, intron 5 of 16)	107991.0	NM_015800	50766.0	Mm.311912	NM_015800	ENSMUSG00000024074	Crim1	AU015004	cysteine rich transmembrane BMP regulator 1 (chordin like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-83739389-4	chr8	83739263	83739463	+	974.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011925, intron 1 of 19)	intron (NM_011925, intron 1 of 19)	1948.0	NM_001163029	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	1.17628582158686	1.04033552258397	1.93327813903416	2.78695505257128	1.98829283548151	1.3203522312171	1.95026481588509	1.24110597229268	-0.729387842088987	0.529151122359642	0.949464880269839
Merged-chr4-142053401-2	chr4	142053301	142053501	+	916.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145402, intron 1 of 2)	intron (NM_145402, intron 1 of 2)	-30897.0	NR_027137	100038693.0	Mm.402714	NR_027137	ENSMUSG00000073728	Tmem51os1	Gm10565|Tmem51as1	Tmem51 opposite strand 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-12591120-4	chr19	12591031	12591231	+	855.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015503, intron 1 of 1)	intron (NR_015503, intron 1 of 1)	5435.0	NR_015503	74333.0	Mm.329744	NR_015503	ENSMUSG00000086213	A330040F15Rik	-	RIKEN cDNA A330040F15 gene	ncRNA	0.460756568590257	2.64064082528953	0.513425421182949	0.494319731584077	0.719704520120712	1.47906323541425	1.55282070813619	0.497714002571397	-0.866609481755582	0.738534649421223	0.998431161219273
Merged-chr8-109682801-2	chr8	109682701	109682901	+	861.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_155034, intron 2 of 10)	intron (NR_155034, intron 2 of 10)	10493.0	NR_155034	71955.0	Mm.290036	NM_028018	ENSMUSG00000031729	Ist1	2400003C14Rik|AW536298|mKIAA0174	increased sodium tolerance 1 homolog (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-88354323-2	chr17	88354223	88354423	+	604.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-86381.0	NM_001355743	14236.0	Mm.112824	NM_180974	ENSMUSG00000034998	Foxn2	3230402J05Rik|6030465J18Rik|Fkh19|Foxn1|HTLF	forkhead box N2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-31928540-3	chr16	31928443	31928643	+	713.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-5308.0	NM_172822	239827.0	Mm.440388	NM_172822	ENSMUSG00000045625	Pigz	F630022B06Rik	phosphatidylinositol glycan anchor biosynthesis, class Z	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133131410-5	chr4	133131279	133131479	+	865.7666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153423, intron 1 of 8)	intron (NM_153423, intron 1 of 8)	746.0	NM_153423	242687.0	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	2.00708627034151	1.28662092839088	2.41065205794196	2.23523009413134	2.13461674199267	1.29363832080283	2.98695953735793	2.24722890407287	0.595328100890092	0.558298051693399	0.960321604678676
Merged-chr7-82828518-2	chr7	82828418	82828618	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38815.0	NM_175366	108797.0	Mm.306789	NM_175366	ENSMUSG00000057706	Mex3b	4931439A04Rik|M-04814|Rkhd3|mKIAA2009	mex3 RNA binding family member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-84626478-4	chr17	84626376	84626576	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172256)	promoter-TSS (NM_172256)	-23.0	NM_172256	213575.0	Mm.246119	NM_172256	ENSMUSG00000024253	Dync2li1	4933404O11Rik|CGI-60|D2lic|LIC3|mD2LIC	dynein cytoplasmic 2 light intermediate chain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-107778165-4	chr3	107778035	107778235	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17666.0	NM_001113529	12977.0	Mm.795	NM_007778	ENSMUSG00000014599	Csf1	C87615|Csfm|MCSF|op	colony stimulating factor 1 (macrophage)	protein-coding	2.61146561109576	3.70701155845075	3.52454996806589	1.50992128457627	2.52106289054112	2.97004913873209	2.74673074627437	3.44543061205961	-0.211116407253168	0.786205073049476	0.998431161219273
Merged-chr4-127027498-4	chr4	127027426	127027626	+	777.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045010, intron 9 of 11)	intron (NR_045010, intron 9 of 11)	6225.0	NM_023603	71514.0	Mm.257276	NM_023603	ENSMUSG00000028820	Sfpq	1110004P21Rik|2810416M14Rik|5730453G22Rik|9030402K04Rik|AU021830|D4Ertd314e|Gm12940|PSF|REP1	splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-62496500-2	chr11	62496400	62496600	+	698.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039536, intron 2 of 6)	intron (NM_001039536, intron 2 of 6)	38040.0	NM_001039536	327942.0	Mm.390358	NM_199026	ENSMUSG00000014245	Pigl	Gm737	phosphatidylinositol glycan anchor biosynthesis, class L	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-109987908-3	chr4	109987847	109988047	+	888.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9922.0	NM_172296	242620.0	Mm.32825	NM_172296	ENSMUSG00000047143	Dmrta2	Dmrt5	doublesex and mab-3 related transcription factor like family A2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-11628187-4	chr4	11628076	11628276	+	839.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48514.0	NM_001256142	100503583.0	Mm.249437	NM_001256142	ENSMUSG00000094595	Fsbp	-	fibrinogen silencer binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-145131457-3	chr3	145131366	145131566	+	743.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162538, intron 7 of 16)	intron (NM_001162538, intron 7 of 16)	12866.0	NM_025714	52184.0	Mm.259105	NM_025714	ENSMUSG00000028256	Odf2l	4733401D09Rik|9630045K08Rik|D3Ertd250e	outer dense fiber of sperm tails 2-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-10120671-4	chr10	10120561	10120761	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-219621.0	NM_001081344	78808.0	Mm.331751	NM_030191	ENSMUSG00000019790	Stxbp5	0710001E20Rik|4930565N16Rik|AW742610|LGL3|mKIAA1006	syntaxin binding protein 5 (tomosyn)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44318540-4	chr9	44318488	44318688	+	784.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359259, intron 1 of 13)	intron (NM_001359259, intron 1 of 13)	1694.0	NM_001359259	71764.0	Mm.491174	NM_027909	ENSMUSG00000032120	C2cd2l	1300006O23Rik|Tmem24	C2 calcium-dependent domain containing 2-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-141057656-2	chr5	141057556	141057756	+	623.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57060.0	NM_175362	108723.0	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-80257815-2	chr13	80257715	80257915	+	642.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-625569.0	NR_153410	105171.0	Mm.423137	NM_001042591	ENSMUSG00000074794	Arrdc3	AI450344|mKIAA1376	arrestin domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-9766502-2	chr13	9766402	9766602	+	858.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1181.0	NM_144516	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-66213777-4	chr9	66213667	66213867	+	970.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010019, intron 2 of 11)	intron (NM_010019, intron 2 of 11)	55541.0	NM_010019	13143.0	Mm.304472	NM_010019	ENSMUSG00000032380	Dapk2	-	death-associated protein kinase 2	protein-coding	2.49084731228041	2.97049248934061	1.70288808062526	2.52754978566961	2.08541953308705	2.33151113947987	2.81028375278698	2.31830138073524	-0.191013777870525	0.817151941654545	0.998431161219273
Merged-chr5-145114763-4	chr5	145114673	145114873	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023142, intron 1 of 9)	CpG	517.0	NM_023142	11867.0	Mm.30010	NM_023142	ENSMUSG00000029622	Arpc1b	41kDa|AA408064|AA408534|AA571392|AF007010|AW208418|L72|SOP2Hs|p41-ARC	actin related protein 2/3 complex, subunit 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-100504538-4	chr9	100504441	100504641	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010878, intron 2 of 3)	L3|LINE|CR1	2315.0	NM_001324530	17973.0	Mm.181485	NM_010878	ENSMUSG00000032475	Nck1	6330586M15Rik|D230010O13Rik|Nck|Nck-1	non-catalytic region of tyrosine kinase adaptor protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-106585829-4	chr8	106585725	106585925	+	920.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1318.0	NR_045470	68692.0	Mm.416843	NR_045470	ENSMUSG00000099139	1110028F18Rik	-	RIKEN cDNA 1110028F18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-29438478-2	chr17	29438378	29438578	+	738.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52567.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-46565817-4	chr4	46565704	46565904	+	901.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178893, intron 1 of 12)	intron (NM_178893, intron 1 of 12)	636.0	NM_178893	107684.0	Mm.416311	NM_178893	ENSMUSG00000028337	Coro2a	9030208C03Rik|AI563590|IR10	coronin, actin binding protein 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-132390871-3	chr1	132390763	132390963	+	762.866638	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311107)	promoter-TSS (NM_001311107)	523.0	NM_178874	68875.0	Mm.273785	NM_178874	ENSMUSG00000042066	Tmcc2	1110063G11Rik	transmembrane and coiled-coil domains 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-88232666-2	chr1	88232566	88232766	+	838.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001281466, intron 6 of 41)	MTD|LTR|ERVL-MaLR	5646.0	NM_001281466	100040766.0	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	Heatr7b1	maestro heat-like repeat family member 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-33640176-7	chr17	33640004	33640204	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028279, intron 1 of 9)	intron (NR_028279, intron 1 of 9)	2009.0	NR_028279	378460.0	Mm.272606	NM_001002842	ENSMUSG00000032739	Pram1	AY665714	PML-RAR alpha-regulated adaptor molecule 1	protein-coding	4.83160615848551	4.84595135627848	4.55374723652755	4.43247148618665	3.84701785342113	3.82308914278634	5.52261272106205	5.25422046990303	0.188115099408682	0.672372225705421	0.99440487726309
Merged-chr17-35204076-2	chr17	35204003	35204203	+	583.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_105940)	TTS (NR_105940)	454.0	NR_105940	102466990.0		NR_105940	ENSMUSG00000099006	Mir6974	Gm27658|mmu-mir-6974	microRNA 6974	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-106330890-1	chr9	106330790	106330990	+	731.0	f1_c57bl6.idr	intron (NM_027354, intron 10 of 10)	MTC|LTR|ERVL-MaLR	-37742.0	NM_153459	235584.0	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	1.16544381992582	2.1629985840432	0.706780705843638	1.49010101403641	1.17694509840823	0.977377713705689	0.710387451065984	0.915160014353574	-2.07345080031548	0.135123501645546	0.57408348893175
Merged-chr12-110908011-3	chr12	110907914	110908114	+	926.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175336, intron 3 of 20)	intron (NM_175336, intron 3 of 20)	18750.0	NM_001081057	104859.0	Mm.35583	NM_175336	ENSMUSG00000021275	Tecpr2	4930573I19Rik|AI604920|mKIAA0297	tectonin beta-propeller repeat containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-138205378-1	chr4	138205278	138205478	+	690.0	f1_balb.idr	intron (NM_001355700, intron 30 of 30)	B1_Mus1|SINE|Alu	-11234.0	NM_001122896	15441.0	Mm.348429	NM_010470	ENSMUSG00000028759	Hp1bp3	Hp1bp74	heterochromatin protein 1, binding protein 3	protein-coding	2.60822210122573	1.8418860655011	2.63382232042748	2.34451144566626	2.35618482476226	2.21552349488065	3.17179762212846	2.5747643009722	0.555756818094979	0.490978032500031	0.934348276504501
Merged-chr18-44827860-3	chr18	44827750	44827950	+	994.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163013)	promoter-TSS (NM_001163013)	-815.0	NM_001163013	240255.0	Mm.244482	NM_001163013	ENSMUSG00000034653	Ythdc2	3010002F02Rik|BC037178	YTH domain containing 2	protein-coding	4.04471116078183	3.83989279102932	3.94798819215995	3.84185189863525	1.42150075341232	2.93133813404678	2.95244688839216	1.80718736237156	-2.45363013730801	0.000273961104750603	0.00687653835731744
Merged-chr2-5392608-4	chr2	5392509	5392709	+	919.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030601, intron 1 of 1)	intron (NR_030601, intron 1 of 1)	13219.0	NR_030601	100124465.0		NR_030601	ENSMUSG00000078031	Mir466d	Mirn466d	microRNA 466d	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126725325-4	chr7	126725202	126725402	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-20486.0	NM_009898	12721.0	Mm.290482	NM_009898	ENSMUSG00000030707	Coro1a	Clabp|Lmb3|TACO|p57	coronin, actin binding protein 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-5802671-2	chr11	5802524	5802724	+	907.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_018870, intron 2 of 2)	intron (NM_018870, intron 2 of 2)	1172.0	NM_018870	56012.0	Mm.219627	NM_018870	ENSMUSG00000020475	Pgam2	-	phosphoglycerate mutase 2	protein-coding	1.31329868204496	1.50995396074361	0.710894358046288	1.17595351838794	1.32625250756871	1.27444538361081	0.713458243504422	0.703450892561187	-0.712304121968569	0.634610423118195	0.982417279970648
Merged-chr3-97294941-3	chr3	97294858	97295058	+	767.944458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-67594.0	NM_029933	77578.0	Mm.226175	NM_029933	ENSMUSG00000038256	Bcl9	2610202E01Rik|8030475K17Rik|A330041G23Rik|Gm130	B cell CLL/lymphoma 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-37164689-3	chr14	37164554	37164754	+	617.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29332.0	NM_078478	66092.0	Mm.182912	NM_078478	ENSMUSG00000041028	Ghitm	1010001P14Rik|C77840|MICS1|PTD010|Tmbim5	growth hormone inducible transmembrane protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180405725-4	chr1	180405517	180405717	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081175, intron 2 of 7)	intron (NM_001081175, intron 2 of 7)	-75068.0	NR_003623	277333.0	Mm.389223	NM_199472		Gm5069	EG277333	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102414668-3	chr12	102414569	102414769	+	946.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011175, intron 2 of 13)	intron (NM_011175, intron 2 of 13)	25144.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0.874368301714664	0.93201923344364	1.14068783057384	1.79333854889173	2.15340692855915	1.8281723351267	1.49796279101076	1.29661114006369	1.63655773711747	0.197990860170312	0.680657404104128
Merged-chr9-5308174-4	chr9	5308073	5308273	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007609)	promoter-TSS (NM_007609)	-676.0	NM_007609	12363.0	Mm.1569	NM_007609	ENSMUSG00000033538	Casp4	CASP-11|CASP-4|Casp11|Caspl|ich-3	caspase 4, apoptosis-related cysteine peptidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-98512497-2	chr15	98512397	98512597	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	7337.0	NR_034051	100217417.0	Mm.486440	NR_034051	ENSMUSG00000065336	Snora34	MBI-89	small nucleolar RNA, H/ACA box 34	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-38695360-3	chr16	38695248	38695448	+	883.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020260, intron 1 of 11)	MLT1D|LTR|ERVL-MaLR	17687.0	NM_020260	12549.0	Mm.370848	NM_020260	ENSMUSG00000022799	Arhgap31	5830477L08Rik|AU041750|Cdgap|D330026I07Rik	Rho GTPase activating protein 31	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-21992560-4	chr10	21992482	21992682	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161849, intron 1 of 11)	intron (NM_001161849, intron 1 of 11)	359.0	NM_001161849	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	5.23523742379401	5.32191709406848	4.77331631790404	5.22785617018292	4.73930412137482	4.70696895718176	5.47781426559451	5.25085996009037	-0.0857166531110175	0.79169007729983	0.998431161219273
Merged-chr19-46657829-2	chr19	46657729	46657929	+	705.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001177812)	TTS (NM_001177812)	15171.0	NM_007809	13074.0	Mm.1262	NM_007809	ENSMUSG00000003555	Cyp17a1	Cyp17|p450c17	cytochrome P450, family 17, subfamily a, polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10457530-1	chr19	10457430	10457630	+	588.0	f1_balb.idr	promoter-TSS (NM_001111140)	promoter-TSS (NM_001111140)	-83.0	NM_001111140	278795.0	Mm.490638	NM_001111140	ENSMUSG00000090291	Lrrc10b	Gm705|SerdinR	leucine rich repeat containing 10B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-83863140-4	chr3	83863047	83863247	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21539.0	NM_011905	24088.0	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128057913-4	chr10	128057812	128058012	+	891.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1070.0	NM_019766	56351.0	Mm.305816	NM_019766	ENSMUSG00000071072	Ptges3	5730442A20Rik|Ptges|Tebp|cPGES|p23|sid3177	prostaglandin E synthase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-4974773-3	chr11	4974677	4974877	+	937.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001243043, intron 1 of 22)	intron (NM_001243043, intron 1 of 22)	-12047.0	NM_001355659	11764.0	Mm.274816	NM_007454	ENSMUSG00000009090	Ap1b1	Adtb1|b2b1660Clo	adaptor protein complex AP-1, beta 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-118236314-3	chr14	118236221	118236421	+	637.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_131970)	promoter-TSS (NR_131970)	89.0	NR_131970	105245869.0	Mm.460408	NR_131969	ENSMUSG00000090534	LOC105245869	-	uncharacterized LOC105245869	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-95521757-2	chr9	95521657	95521857	+	571.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTRETN_Mm|LTR|ERVK	-9761.0	NM_001357974	67958.0	Mm.292742	NM_026476	ENSMUSG00000032407	U2surp	2610101N10Rik|AU023006|Sr140	U2 snRNP-associated SURP domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-62761838-2	chr4	62761738	62761938	+	634.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	87864.0	NM_001310706	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	0.496481915762921	0.103921042949583	0.096665458097122	0.0910263403430723	0.0829929681364153	1.0013943401761	0.728389828338411	0.0920141477946284	2.19671853276278	0.30439567717296	1
Merged-chr6-31109007-4	chr6	31108903	31109103	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110471, intron 3 of 3)	intron (NR_110471, intron 3 of 3)	-45910.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34325311-3	chr17	34325224	34325424	+	957.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033978)	promoter-TSS (NM_001033978)	-351.0	NM_001033978	381091.0	Mm.139204	NM_001033978	ENSMUSG00000067341	H2-Eb2	A130038H09Rik|H-2Eb2|Ia-5|Ia5|Iebeta2	histocompatibility 2, class II antigen E beta2	protein-coding	3.75014647424706	4.28625944999318	3.62459057001996	4.47625527459922	2.47458663134482	1.99306246911024	1.91136167898598	3.21073851764117	-2.45760149660571	0.000110640219602049	0.00333533003714921
Merged-chr14-66812446-4	chr14	66812346	66812546	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009955, intron 11 of 13)	intron (NM_009955, intron 11 of 13)	56154.0	NM_009955	12934.0	Mm.352648	NM_009955	ENSMUSG00000022048	Dpysl2	AI851130|Crmp2|DRP2|Musunc33|TOAD-64|Ulip2	dihydropyrimidinase-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-61146364-4	chr10	61146253	61146453	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316674, intron 1 of 14)	CpG	1331.0	NM_009163	20397.0	Mm.412319	NM_009163	ENSMUSG00000020097	Sgpl1	AI428538|D10Xrf456|S1PL|Spl	sphingosine phosphate lyase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-38478953-2	chr2	38478853	38479053	+	582.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32744.0	NM_021606	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-99883511-4	chr12	99883418	99883618	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028354)	promoter-TSS (NM_028354)	-76.0	NM_030172	78767.0	Mm.235920	NM_030172	ENSMUSG00000021176	Efcab11	2610021K21Rik|2610110A13Rik	EF-hand calcium binding domain 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-107950830-4	chr5	107950721	107950921	+	807.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026062, intron 1 of 4)	intron (NM_026062, intron 1 of 4)	36256.0	NM_026062	67266.0	Mm.277897	NM_026062	ENSMUSG00000029270	Fam69a	2900024C23Rik|AI315274	family with sequence similarity 69, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-79880816-2	chr12	79880716	79880916	+	552.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43917.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-113605602-3	chr13	113605525	113605725	+	856.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130796, intron 1 of 1)	intron (NM_130796, intron 1 of 1)	12939.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-55517055-3	chr18	55516956	55517156	+	757.099976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-524465.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-10711240-4	chr8	10711135	10711335	+	987.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	171219.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141287206-3	chr4	141287118	141287318	+	821.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8779.0	NR_151527	100503810.0		NR_151527	ENSMUSG00000085395	Gm13056	-	predicted gene 13056	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-75062208-2	chr8	75062108	75062308	+	937.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001136259, intron 12 of 15)	intron (NM_001136259, intron 12 of 15)	28522.0	NM_011622	21968.0	Mm.1967	NM_011622	ENSMUSG00000042870	Tom1	-	target of myb1 trafficking protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-93478569-2	chr2	93478469	93478669	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15619.0	NM_001136055	12521.0	Mm.4261	NM_007656	ENSMUSG00000027215	Cd82	AA682076|AL023070|C33|IA4|Kai1|Tspan27	CD82 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-16066237-1	chr18	16066137	16066337	+	540.0	f1_balb.idr	Intergenic	L1_Mus2|LINE|L1	-348191.0	NM_199055	71367.0	Mm.329304	NM_199055	ENSMUSG00000047161	Chst9	5430438D01Rik	carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-129331883-4	chr6	129331823	129332023	+	762.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199034)	promoter-TSS (NM_199034)	-142.0	NM_199034	381816.0	Mm.46114	NM_199034	ENSMUSG00000047720	4922502D21Rik	Clec2m|Gm1074|SPATA78	RIKEN cDNA 4922502D21 gene	protein-coding	0.647928944287816	1.16044568945678	0.514120866705175	0.953617058982049	0.785438427891898	0.524821196743148	0.705635302086569	1.26498197731331	0.0567370884376271	0.971174017336879	1
Merged-chr3-146659059-2	chr3	146658959	146659159	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7742.0	NM_029144	75015.0	Mm.250432	NM_029144	ENSMUSG00000048652	4930503B20Rik	1700013A07Rik|1700095G21Rik|4930483N21Rik|Gm1652|Samd13	RIKEN cDNA 4930503B20 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-67884888-4	chr14	67884787	67884987	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177780, intron 1 of 51)	intron (NM_177780, intron 1 of 51)	-25142.0	NR_105857	102465310.0		NR_105857	ENSMUSG00000098866	Mir6539	Gm27464|mir-6539|mmu-mir-6539	microRNA 6539	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166442535-2	chr2	166442435	166442635	+	719.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER5|LTR|ERV1	-4916.0	NR_015558	319684.0	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-31564828-2	chr15	31564728	31564928	+	774.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4005.0	NM_181588	69574.0	Mm.28108	NM_181588	ENSMUSG00000022235	Cmbl	2310016A09Rik	carboxymethylenebutenolidase-like (Pseudomonas)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-156861827-3	chr1	156861697	156861897	+	784.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_028333)	TTS (NM_028333)	22774.0	NM_028333	72713.0	Mm.389206	NM_028333	ENSMUSG00000033544	Angptl1	2810039D03Rik|ANG3|ANGPT3|ANGY|ARP1	angiopoietin-like 1	protein-coding	0.0573124221697447	0.0781403549202802	0.0713623624053407	0.523468273616077	0.576845694234763	0.959687206077594	0.0728609606969444	0.0670239556085653	1.87140014382779	0.386124348906663	1
Merged-chr9-44131658-2	chr9	44131558	44131758	+	698.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_152189, intron 1 of 1)	intron (NR_152189, intron 1 of 1)	2827.0	NR_152189	100038560.0	Mm.429758	NR_152189		Gm10687	-	predicted gene 10687	ncRNA	0.0474616731102921	0.45222124435414	0.966920533342909	0.632905584959904	0.0487977906349719	0.0701843071189281	0.0632754565872152	0.0573421475092231	-4.18208984059571	0.0463175726604374	1
Merged-chr4-132636718-3	chr4	132636560	132636760	+	650.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-2386.0	NM_210071	14050.0	Mm.227733	NM_010166	ENSMUSG00000028886	Eya3	AI844637	EYA transcriptional coactivator and phosphatase 3	protein-coding	3.30552759145232	3.05735262561653	2.29628632576231	3.68849198763225	2.74664674796392	2.39551803150146	2.62525710779128	2.9817511636583	-0.862223003913964	0.211610012069572	0.700512509175108
Merged-chr12-4843955-4	chr12	4843850	4844050	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170858, intron 1 of 3)	(TG)n|Simple_repeat|Simple_repeat	647.0	NM_001170858	238037.0	Mm.146087	NM_173416	ENSMUSG00000051721	Wdcp	A430092C04	WD repeat and coiled coil containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-134195465-2	chr1	134195365	134195565	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357515, intron 3 of 10)	intron (NM_001357515, intron 3 of 10)	2017.0	NM_016749	53311.0	Mm.379067	NM_016749	ENSMUSG00000042451	Mybph	AI385643|MyBP-H	myosin binding protein H	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-75262544-1	chr4	75262444	75262644	+	673.0	f0_balb.idr	Intergenic	Intergenic	15748.0	NM_025849	66928.0	Mm.24332	NM_025849	ENSMUSG00000028398	Dmac1	1700027K24Rik|3110001D03Rik|Tmem261	distal membrane arm assembly complex 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-107552450-4	chr8	107552343	107552543	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025830, intron 17 of 23)	intron (NM_025830, intron 17 of 23)	1199.0	NR_029553	387158.0		NR_029553	ENSMUSG00000065439	Mir140	Mirn140|mir-140|mmu-mir-140	microRNA 140	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-146915003-3	chr3	146914904	146915104	+	894.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302957, intron 9 of 21)	intron (NM_001302957, intron 9 of 21)	62637.0	NM_001302957	70892.0	Mm.187793	NM_027594	ENSMUSG00000036745	Ttll7	1110049N09Rik|4921517B04Rik|C630030B20|mTTLL7	tubulin tyrosine ligase-like family, member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-17414721-1	chr14	17414621	17414821	+	1000.0	f0_balb.idr	Intergenic	Intergenic	-246239.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-131173329-1	chr2	131173229	131173429	+	683.0	f1_balb.idr	intron (NM_027641, intron 1 of 6)	intron (NM_027641, intron 1 of 6)	1481.0	NM_027641	70997.0	Mm.252722	NM_027641	ENSMUSG00000027329	Spef1	4931426K16Rik|Clamp	sperm flagellar 1	protein-coding	0.714982037641066	0.176785754329306	0.170746436841421	0.695190180624303	0.304944026901328	0.178146759041268	0.74588840833008	0.166899306522177	-0.617389848459284	0.758178752189873	1
Merged-chr12-51741816-2	chr12	51741716	51741916	+	672.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49902.0	NM_052973	94186.0	Mm.65979	NM_052973	ENSMUSG00000020954	Strn3	Gs2na|SG2NA	striatin, calmodulin binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-7332040-4	chr9	7331959	7332159	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12338.0	NM_001320077	17381.0	Mm.2055	NM_008605	ENSMUSG00000049723	Mmp12	AV378681|MME|Mmel	matrix metallopeptidase 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55629491-3	chr14	55629364	55629564	+	824.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_024267, exon 20 of 30)	exon (NM_024267, exon 20 of 30)	6220.0	NR_153401	75751.0	Mm.27546	NM_024267	ENSMUSG00000002319	Ipo4	8430408O15Rik|AA409693|Imp4a|RanBP4	importin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-45917306-4	chr1	45917266	45917466	+	908.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016917, intron 5 of 7)	intron (NM_016917, intron 5 of 7)	8228.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-61415992-2	chr14	61415896	61416096	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008466, intron 1 of 16)	MTA_Mm|LTR|ERVL-MaLR	23951.0	NM_008466	16648.0	Mm.25548	NM_008466	ENSMUSG00000021929	Kpna3	IPOA4	karyopherin (importin) alpha 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-49452108-4	chr2	49452001	49452201	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172663, intron 1 of 13)	CpG	615.0	NM_172663	227867.0	Mm.29167	NM_172663	ENSMUSG00000069495	Epc2	5830499L14|D2Ertd694e	enhancer of polycomb homolog 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-83615968-1	chr7	83615868	83616068	+	835.0	f0_c57.idr	exon (NM_177695, exon 18 of 23)	exon (NM_177695, exon 18 of 23)	-16049.0	NM_023377	170460.0	Mm.357953	NM_023377	ENSMUSG00000046027	Stard5	2310058G22Rik|AI607880|D7Ertd152e	StAR-related lipid transfer (START) domain containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114168831-1	chr11	114168731	114168931	+	547.0	f1_balb.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-29427.0	NR_045930	73536.0	Mm.54275	NR_045930	ENSMUSG00000078600	1700092K14Rik	-	RIKEN cDNA 1700092K14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84436112-1	chr8	84436012	84436212	+	668.0	f0_balb.idr	intron (NM_001252060, intron 1 of 47)	intron (NM_001252060, intron 1 of 47)	20748.0	NM_001252061	12286.0	Mm.334658	NM_007578	ENSMUSG00000034656	Cacna1a	APCA|BI|Caca1a|Cacnl1a4|Cav2.1|Ccha1a|EA2|FHM|HPCA|MHP|MHP1|SCA6|alpha1A|la|nmf352|rkr|smrl|tg	calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	protein-coding	0.366099010310581	0.413347758095866	0.398373878763199	0.386497640045339	0.902957542817445	0.416661457288271	1.61167231674475	1.83967366114796	4.97337137040467	0.00412982412311849	0.0576605467368219
Merged-chr13-107831364-4	chr13	107831230	107831430	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 2 of 14)	intron (NM_145456, intron 2 of 14)	58734.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	6.35272050130804	6.42812198830567	6.82054582822862	6.71488900039086	6.31565548154713	6.8245069565111	6.49512268767475	6.10745960974672	-0.147823942376386	0.494795533702877	0.935679785535167
Merged-chr2-18899375-3	chr2	18899222	18899422	+	817.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008845, intron 3 of 9)	intron (NM_008845, intron 3 of 9)	-97504.0	NR_131254	66774.0	Mm.87075	NR_131254	ENSMUSG00000097638	Carlr	4933439G12Rik|Carl	cardiac and apoptosis-related long non-coding RNA	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-21056179-4	chr5	21056094	21056294	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356591)	promoter-TSS (NM_001356591)	-283.0	NM_011203	19248.0	Mm.319117	NM_011203	ENSMUSG00000028771	Ptpn12	P19-PTP|PTP-P19|PTP-PEST|PTPG1	protein tyrosine phosphatase, non-receptor type 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-29248229-2	chr7	29248129	29248329	+	573.75	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001110201)	TTS (NM_001110201)	238.0	NM_028179	72275.0	Mm.441142	NM_028179	ENSMUSG00000030587	2200002D01Rik	2010005J02Rik|H2RSP|IMUP|IMUP-1|IMUP-2	RIKEN cDNA 2200002D01 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-43570638-4	chr17	43570544	43570744	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013737, intron 1 of 11)	intron (NM_013737, intron 1 of 11)	2193.0	NM_013737	27226.0	Mm.9277	NM_013737	ENSMUSG00000023913	Pla2g7	PAF-AH|R75400	phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	protein-coding	4.58556063555719	3.30622948428633	3.0586476904967	4.21168929283714	4.61850484432818	3.20157258504172	4.01064848995385	4.2318363272692	0.225756930300704	0.676313616629316	0.99440487726309
Merged-chr10-118012146-4	chr10	118012065	118012265	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	86706.0	NR_045342	71067.0	Mm.410793	NR_045342	ENSMUSG00000112500	4933411E08Rik	-	RIKEN cDNA 4933411E08 gene	ncRNA	3.12363058311159	3.09298615992611	2.78949829453395	3.28600050874813	3.08411631317831	2.50813226656748	1.57367534652738	2.61198661485347	-0.966275558799061	0.19432667490601	0.674631641388253
Merged-chr8-123406968-4	chr8	123406845	123407045	+	857.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008559)	promoter-TSS (NM_008559)	-137.0	NM_008559	17199.0	Mm.324942	NM_008559	ENSMUSG00000074037	Mc1r	Mcr1|Mshra|Tob|e	melanocortin 1 receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-102985223-1	chr14	102985123	102985323	+	550.0	f1_balb.idr	Intergenic	L2a|LINE|L2	-2586.0	NM_177715	239217.0	Mm.246466	NM_177715	ENSMUSG00000098557	Kctd12	AU046135|AW538430|Pfet1|Pfetin	potassium channel tetramerisation domain containing 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-29093728-4	chr17	29093641	29093841	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007669)	promoter-TSS (NM_007669)	-28.0	NM_007669	12575.0	Mm.195663	NM_007669	ENSMUSG00000023067	Cdkn1a	CAP20|CDKI|CIP1|Cdkn1|P21|SDI1|Waf1|mda6|p21Cip1|p21WAF	cyclin-dependent kinase inhibitor 1A (P21)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101279824-2	chr15	101279724	101279924	+	859.041626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4477.0	NM_026566	68118.0	Mm.482360	NM_026566	ENSMUSG00000037204	Atg101	9430023L20Rik|AA407441|AU022967	autophagy related 101	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-58624701-2	chr17	58624601	58624801	+	756.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	366674.0	NM_027001	69239.0	Mm.246732	NM_027001	ENSMUSG00000024227	Pdzph1	2610034M16Rik|AV114557	PDZ and pleckstrin homology domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-94264615-4	chr2	94264525	94264725	+	815.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3226.0	NR_030431	735259.0		NR_030431	ENSMUSG00000076335	Mir670	Mirn670|mir-670|mmu-mir-670	microRNA 670	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-96161085-3	chr5	96160982	96161182	+	821.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144910, intron 1 of 11)	CpG	465.0	NM_001285511	231464.0	Mm.28374	NM_144910	ENSMUSG00000034724	Cnot6l	4932442K20Rik	CCR4-NOT transcription complex, subunit 6-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-151001863-3	chr2	151001764	151001964	+	818.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207204, intron 1 of 23)	intron (NM_207204, intron 1 of 23)	7534.0	NM_207204	78177.0	Mm.120911	NM_207204	ENSMUSG00000068115	Ninl	4930519N13Rik|Gm1004|Gm1634|mKIAA0980	ninein-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-21315830-3	chr12	21315756	21315956	+	881.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026347)	promoter-TSS (NM_026347)	-536.0	NM_026347	67732.0	Mm.335830	NM_026347	ENSMUSG00000062054	Iah1	1500019E20Rik|4833421E05Rik	isoamyl acetate-hydrolyzing esterase 1 homolog	protein-coding	3.70876573371206	4.093371228638	3.54078304943532	2.30206674502394	4.82807268154809	4.8729377041664	4.35793421187809	4.88420713784682	1.59578384614302	0.000727667380513433	0.0150009505694161
Merged-chr1-156264171-4	chr1	156264068	156264268	+	971.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001134741, intron 14 of 17)	ORR1F|LTR|ERVL-MaLR	39180.0	NM_001134741	214575.0	Mm.252800	NM_001134741	ENSMUSG00000060985	Tdrd5	Gm103	tudor domain containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-45079907-3	chr19	45079832	45080032	+	794.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001362398)	TTS (NM_001362398)	3845.0	NM_001362397	107250.0	Mm.24417	NM_178929	ENSMUSG00000025213	Kazald1	AI842353|Bono1|IGFBP-rP10	Kazal-type serine peptidase inhibitor domain 1	protein-coding	0.636847812122693	-0.123691391737631	-0.129897274626729	-0.134716776671923	-0.141576200325852	-0.122298675995779	-0.128524619474421	0.740818323892992	0.269975330733246	0.911764157204615	1
Merged-chr5-8243147-2	chr5	8243047	8243247	+	767.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001007220, intron 3 of 28)	RMER1A|Other|Other	125013.0	NM_001007221	11496.0	Mm.275895	NM_001007220	ENSMUSG00000040537	Adam22	2900022I03Rik|AI854032|MDC2	a disintegrin and metallopeptidase domain 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-79977964-2	chr10	79977864	79978064	+	720.25	f1_balb.idr|f1_c57bl6.idr	TTS (NM_130455)	TTS (NM_130455)	6296.0	NM_001359632	216157.0	Mm.29442	NM_001003949	ENSMUSG00000013858	Tmem259	AC087114.7gm2|ORF61|R32184_3|mFLJ00277	transmembrane protein 259	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-145510887-4	chr2	145510794	145510994	+	936.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053195, intron 3 of 16)	intron (NM_053195, intron 3 of 16)	44088.0	NM_001037929	627302.0	Mm.445953	NM_001037929		Gm14092	-	predicted gene 14092	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-54329373-2	chr6	54329273	54329473	+	847.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_030024, exon 2 of 2)	exon (NM_030024, exon 2 of 2)	2361.0	NM_030024	78004.0	Mm.41984	NM_030024	ENSMUSG00000045725	Prr15	E130201N16Rik|G90	proline rich 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91490938-2	chr16	91490838	91491038	+	749.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010508, intron 2 of 10)	intron (NM_010508, intron 2 of 10)	5723.0	NM_010508	15975.0	Mm.502	NM_010508	ENSMUSG00000022967	Ifnar1	Ifar|Ifnar|Ifrc|Infar	interferon (alpha and beta) receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-122210252-2	chr7	122210152	122210352	+	727.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9244.0	NM_027363	70261.0	Mm.96997	NM_027363	ENSMUSG00000030865	Chp2	2010110P09Rik|Cbhp2	calcineurin-like EF hand protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-70509389-2	chr2	70509280	70509480	+	869.25	f0_balb.idr|f1_balb.idr	exon (NM_025744, exon 1 of 13)	exon (NM_025744, exon 1 of 13)	561.0	NM_025744	66748.0	Mm.423014	NM_025744	ENSMUSG00000075302	Erich2	4933404M02Rik	glutamate rich 2	protein-coding	1.37116894008864	0.69757435429891	1.04599785674012	0.677751020306901	1.2970522218793	1.24528959302715	1.43140102734193	0.679274230204511	0.899303785150675	0.554198800403187	0.959914380895535
Merged-chr12-3871877-4	chr12	3871769	3871969	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007872, intron 4 of 22)	intron (NM_007872, intron 4 of 22)	-9625.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-77245676-4	chr5	77245555	77245755	+	828.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19839.0	NM_011263	19712.0	Mm.28840	NM_011263	ENSMUSG00000029249	Rest	2610008J04Rik|AA407358|NRSF|REST4	RE1-silencing transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-73367920-4	chr6	73367917	73368117	+	830.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	101650.0	NM_025737	66740.0	Mm.440760	NM_025737	ENSMUSG00000056197	4931417E11Rik	-	RIKEN cDNA 4931417E11 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-35232913-4	chr2	35232836	35233036	+	947.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4_|SINE|ID	-23423.0	NM_001206367	227753.0	Mm.443	NM_146120	ENSMUSG00000026879	Gsn	ADF	gelsolin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-39120303-4	chr6	39120166	39120366	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045813, intron 1 of 3)	RMER16|LTR|ERVK	1793.0	NR_045813	75379.0	Mm.348014	NR_045813	ENSMUSG00000073144	4930599N23Rik	-	RIKEN cDNA 4930599N23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-8857649-3	chr4	8857522	8857722	+	919.2777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355382, intron 31 of 36)	intron (NM_001355382, intron 31 of 36)	106298.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0.622811006712887	0.620495477218335	0.257072504137853	0.418082866946717	0.52001732334058	0.265228420443705	1.03814712424273	0.252826333707348	0.505304140151684	0.781100014967144	1
Merged-chr9-122861023-1	chr9	122860923	122861123	+	781.0	f0_c57.idr	intron (NM_001359935, intron 2 of 6)	intron (NM_001359935, intron 2 of 6)	4983.0	NM_001359935	235682.0	Mm.326477	NM_173364	ENSMUSG00000047036	Zfp445	AW610627|ZNF168|Znf445|mszf29|mszf50	zinc finger protein 445	protein-coding	0.640762104997128	1.12637636383421	0.633587427427255	0.120465673812654	0.111871168409403	0.135960717665355	0.12820198688197	0.121521324656706	-4.2925212970087	0.0341784990202479	1
Merged-chr14-63443622-5	chr14	63443549	63443749	+	918.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177628, intron 2 of 3)	intron (NM_177628, intron 2 of 3)	7255.0	NM_177628	219148.0	Mm.37882	NM_177628	ENSMUSG00000035095	Fam167a	A030013D21	family with sequence similarity 167, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124554683-2	chr5	124554583	124554783	+	560.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_026409, exon 3 of 14)	exon (NM_026409, exon 3 of 14)	1819.0	NM_026409	67848.0	Mm.281601	NM_026409	ENSMUSG00000029389	Ddx55	2810021H22Rik|mKIAA1595	DEAD (Asp-Glu-Ala-Asp) box polypeptide 55	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-46834008-1	chr11	46833908	46834108	+	1000.0	f1_balb.idr	intron (NM_178759, intron 5 of 8)	B4A|SINE|B4	23209.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	1.50384462158741	2.20302045801675	1.39388809663868	1.59989991014764	0.779350529692487	0.835313384371965	0.817650486666668	1.35726941682773	-2.99058390220729	0.0332051953976425	0.255363508057459
Merged-chr10-7211090-2	chr10	7210990	7211190	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172546, intron 1 of 12)	intron (NM_172546, intron 1 of 12)	1147.0	NM_172546	215748.0	Mm.37984	NM_172546	ENSMUSG00000015202	Cnksr3	6820402C05|BC024086|Magi1	Cnksr family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46308475-2	chr19	46308375	46308575	+	836.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001177369, exon 11 of 23)	exon (NM_001177369, exon 11 of 23)	2545.0	NM_001177370	18034.0	Mm.102365	NM_019408	ENSMUSG00000025225	Nfkb2	NF-kappaB2|lyt|p49|p49/p100|p50B|p52	nuclear factor of kappa light polypeptide gene enhancer in B cells 2, p49/p100	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-64901236-3	chr14	64901150	64901350	+	590.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177338, intron 2 of 9)	intron (NM_177338, intron 2 of 9)	48607.0	NM_177338	219150.0	Mm.344074	NM_177338	ENSMUSG00000021972	Hmbox1	AI451877|AI604847|F830020C16Rik	homeobox containing 1	protein-coding	0.79311099281038	1.72533684948157	0.638597676987713	0.627546789902835	1.09225113792193	0.897505217329533	0.866477745475088	1.76486848181962	0.614276554547309	0.674712797778676	0.99440487726309
Merged-chr3-19060546-2	chr3	19060446	19060646	+	553.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	102549.0	NM_028840	74252.0	Mm.200383	NM_028840	ENSMUSG00000027599	Armc1	2310016N05Rik|2900046P06Rik|3110009G21Rik|AA409258|AW048872|Arcp|C330014L16Rik	armadillo repeat containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-57694582-4	chr15	57694490	57694690	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199449)	promoter-TSS (NM_199449)	-77.0	NM_199449	387609.0	Mm.36557	NM_199449	ENSMUSG00000071757	Zhx2	Afr-1|Afr1|Raf|mKIAA0854	zinc fingers and homeoboxes 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-47986725-2	chr8	47986625	47986825	+	636.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133791, intron 1 of 22)	intron (NM_133791, intron 1 of 22)	3826.0	NM_133791	52357.0	Mm.235074	NM_133791	ENSMUSG00000031563	Wwc2	5330431C14Rik|AU022508|C85457|D8Ertd594e	WW, C2 and coiled-coil domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-73431923-2	chr16	73431823	73432023	+	620.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17B|LTR|ERVK	768774.0	NM_019413	19876.0	Mm.310772	NM_019413	ENSMUSG00000022883	Robo1	AW494633|AW742721|DUTT1|Gm310	roundabout guidance receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-142747444-2	chr5	142747344	142747544	+	770.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001122730, intron 16 of 27)	L1M5|LINE|L1	45343.0	NM_146257	243328.0	Mm.125942	NM_146257	ENSMUSG00000050822	Slc29a4	ENT4|mPMAT	solute carrier family 29 (nucleoside transporters), member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127644700-3	chr10	127644610	127644810	+	830.277771	f1_balb.idr|f1_c57bl6.idr	intron (NM_009284, intron 1 of 21)	intron (NM_009284, intron 1 of 21)	1724.0	NM_009284	20852.0	Mm.121721	NM_009284	ENSMUSG00000002147	Stat6	-	signal transducer and activator of transcription 6	protein-coding	2.60915689695381	2.17922126591196	1.71274242858728	2.91159887964675	2.54373905037559	2.00404710510027	2.4203486611143	3.30364335206309	0.468144988635603	0.57526266745275	0.965286201225318
Merged-chr4-135320771-2	chr4	135320671	135320871	+	592.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001130477, exon 18 of 18)	3' UTR (NM_001130477, exon 18 of 18)	32443.0	NM_016799	51796.0	Mm.1963	NM_016799	ENSMUSG00000028809	Srrm1	AA407769|POP101|Srm160	serine/arginine repetitive matrix 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-77603493-2	chr10	77603393	77603593	+	683.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2604.0	NM_001301672	20610.0	Mm.24433	NM_019929	ENSMUSG00000020265	Sumo3	2810014B19Rik|D10Ertd345e|SMT3A|SUMO-3|Smt3h1	small ubiquitin-like modifier 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27075673-3	chr2	27075573	27075773	+	985.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3512.0	NM_025376	66139.0	Mm.330087	NM_025376	ENSMUSG00000009214	Mymk	1110002H13Rik|AI131587|Tmem8c|myomaker	myomaker, myoblast fusion factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-25257606-2	chr2	25257506	25257706	+	778.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	2167.0	NM_177344	227615.0	Mm.213925	NM_177344	ENSMUSG00000078201	Tmem203	C730025P13Rik|Hbebp1	transmembrane protein 203	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-170319360-4	chr2	170319277	170319477	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36984.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-36974489-4	chr10	36974394	36974594	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008229)	promoter-TSS (NM_008229)	-50.0	NM_008229	15182.0	Mm.19806	NM_008229	ENSMUSG00000019777	Hdac2	D10Wsu179e|YAF1|Yy1bp|mRPD3	histone deacetylase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-19276380-4	chr2	19276224	19276424	+	923.525024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081083, intron 10 of 19)	intron (NM_001081083, intron 10 of 19)	-67993.0	NR_126563	108871.0	Mm.107666	NR_126563		4930447M23Rik	-	RIKEN cDNA 4930447M23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4606659-2	chr16	4606559	4606759	+	976.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_031184, intron 1 of 6)	intron (NM_031184, intron 1 of 6)	11946.0	NM_031184	83396.0	Mm.134072	NM_031184	ENSMUSG00000014303	Glis2	Gli5|Klf16|Nkl	GLIS family zinc finger 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-35754108-4	chr16	35754007	35754207	+	622.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153550, intron 1 of 8)	intron (NM_153550, intron 1 of 8)	15249.0	NM_153550	224132.0	Mm.24094	NM_153550	ENSMUSG00000022848	Dirc2	RCC4	disrupted in renal carcinoma 2 (human)	protein-coding	2.37310329603096	2.97798391921289	1.97442948725295	3.227205673085	2.39286518683381	2.68277326087601	1.98914642311221	2.81325319864236	-0.458072411300806	0.561870309635214	0.960362415684079
Merged-chr13-20090603-4	chr13	20090454	20090654	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080288)	promoter-TSS (NM_080288)	47.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	2.51201518701831	2.57633747278355	1.76518496803923	2.11577876719144	3.41888231628036	3.3872138509105	2.36202650623613	2.95079351762267	1.58512398124057	0.0359583564750435	0.26863534308068
Merged-chr13-58688427-4	chr13	58688340	58688540	+	991.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	73871.0	NR_045469	67585.0	Mm.84751	NR_045469	ENSMUSG00000114384	4930455J16Rik	-	RIKEN cDNA 4930455J16 gene	ncRNA	1.2020814456222	0.339111847936329	0.329563417856629	1.04017103491996	0.31142950097865	1.16527493604273	0.331680382850656	0.323415633692917	-0.916790799995083	0.638315003658323	1
Merged-chr19-55936047-3	chr19	55935878	55936078	+	716.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40657.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-41013343-2	chr14	41013243	41013443	+	684.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001316735, intron 1 of 5)	intron (NM_001316735, intron 1 of 5)	490.0	NM_001316734	70564.0	Mm.27227	NM_027464	ENSMUSG00000021792	Fam213a	5730469M10Rik|AU040822|Adrx|Pamm	family with sequence similarity 213, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-29258542-4	chr5	29258456	29258656	+	929.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020295, intron 11 of 16)	intron (NM_020295, intron 11 of 16)	62563.0	NR_110371	56874.0	Mm.87352	NM_021470	ENSMUSG00000029130	Rnf32	1700009J01Rik|2700025B22Rik|4930542N22Rik|Lmbr2	ring finger protein 32	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-110890859-2	chr10	110890759	110890959	+	777.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045979, intron 2 of 2)	intron (NR_045979, intron 2 of 2)	5648.0	NR_045979	75630.0	Mm.392786	NR_045979	ENSMUSG00000101801	1700020G17Rik	4930480D05Rik	RIKEN cDNA 1700020G17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71662791-4	chr17	71662712	71662912	+	944.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10449.0	NM_177087	320159.0	Mm.187372	NM_177087	ENSMUSG00000045761	Togaram2	4632412N22Rik|Fam179a	TOG array regulator of axonemal microtubules 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-104996515-3	chr2	104996422	104996622	+	801.477783	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177600, intron 17 of 17)	intron (NM_177600, intron 17 of 17)	20505.0	NM_145380	98221.0	Mm.379278	NM_145380	ENSMUSG00000027170	Eif3m	Ga17|Pcid1|Tango7	eukaryotic translation initiation factor 3, subunit M	protein-coding	2.96294454635416	2.3384486964943	3.26967956284213	2.32902728446682	2.34153182734158	2.18968103401667	1.44374282085691	2.76358966474547	-1.06033439228712	0.207986342696835	0.696655538714859
Merged-chr4-86689513-4	chr4	86689403	86689603	+	793.80835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19444.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	1.29992105984003	0.589902710438294	0.578128904105388	0.568910574970422	1.00812682298922	0.821432820704429	0.967799419013242	1.72312434280283	1.63227446956366	0.29854307126972	0.800257675359925
Merged-chr4-3090176-3	chr4	3090096	3090296	+	724.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GSAT_MM|Satellite|Satellite	-81887.0	NM_001167534	100312470.0	Mm.480297	NM_001167534	ENSMUSG00000115072	Vmn1r2	Gm11776	vomeronasal 1 receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-82567830-4	chr18	82567727	82567927	+	807.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025251, intron 2 of 6)	intron (NM_001025251, intron 2 of 6)	13319.0	NM_001025254	17196.0	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-110327229-2	chr13	110327129	110327329	+	645.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29943.0	NM_177713	238875.0	Mm.30533	NM_177713	ENSMUSG00000046006	Gapt	9830130M13Rik	Grb2-binding adaptor, transmembrane	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-87740729-1	chr1	87740629	87740829	+	541.0	f1_c57bl6.idr	Intergenic	Intergenic	-15282.0	NM_029846	77040.0	Mm.272972	NM_029846	ENSMUSG00000026289	Atg16l1	1500009K01Rik|Apg16l|Atg16l|WDR30	autophagy related 16-like 1 (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-23883153-2	chr18	23883053	23883253	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162941, intron 6 of 7)	MLT1A0|LTR|ERVL-MaLR	-71535.0	NM_027007	69256.0	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-42877076-4	chr4	42876967	42877167	+	858.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2833.0	NM_177785	277773.0	Mm.212727	NM_177785	ENSMUSG00000050141	Fam205c	4931430D02|FAM205CP	family with sequence similarity 205, member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-62329109-3	chr4	62329005	62329205	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355385, intron 13 of 27)	intron (NM_001355385, intron 13 of 27)	31491.0	NM_001355385	338355.0	Mm.357792	NM_001045528	ENSMUSG00000066151	Fkbp15	BB131447|C430014M02Rik|FKBO133|FKBP-133|FKBP-15|FKBP133|mKIAA0674	FK506 binding protein 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70544280-4	chr8	70544180	70544380	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007924, intron 1 of 11)	intron (NM_007924, intron 1 of 11)	4605.0	NM_007924	13716.0	Mm.271973	NM_007924	ENSMUSG00000070002	Ell	Ell1|Men	elongation factor RNA polymerase II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99090725-4	chr7	99090627	99090827	+	668.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 4 of 14)	intron (NM_178635, intron 4 of 14)	50417.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-33160487-2	chr14	33160387	33160587	+	867.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001146022, intron 2 of 58)	intron (NM_001146022, intron 2 of 58)	24579.0	NM_001146022	545030.0	Mm.318345	NM_001146022	ENSMUSG00000051506	Wdfy4	Gm18810	WD repeat and FYVE domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-90199843-2	chr7	90199739	90199939	+	940.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360867, intron 19 of 19)	RMER19B|LTR|ERVK	65593.0	NM_029256	75338.0	Mm.487222	NM_029256	ENSMUSG00000030617	Ccdc83	4930549K11Rik|4930554C01Rik|4932423M01Rik	coiled-coil domain containing 83	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-11571028-2	chr2	11570928	11571128	+	812.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17099.0	NM_001177758	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-120092444-2	chr5	120092344	120092544	+	571.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER20|DNA|hAT-Charlie	-24069.0	NM_028762	74111.0	Mm.41022	NM_028762	ENSMUSG00000029594	Rbm19	1200009A02Rik|AV302714|NPO	RNA binding motif protein 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-145129656-1	chr6	145129556	145129756	+	604.0	f0_balb.idr	intron (NM_008511, intron 1 of 18)	B4|SINE|B4	7917.0	NM_008511	16970.0	Mm.843	NM_008511	ENSMUSG00000030263	Lrmp	D6Int3|D6Int4|D6Int5|D6Int7|D6Int8|Jaw1	lymphoid-restricted membrane protein	protein-coding	1.55007436512649	0.66326546979995	1.7202976281715	0.63980937922286	0.806052253013584	0.666193766176425	1.33380870332172	1.01268164405315	-1.0665496307628	0.484376558581485	0.931207887927275
Merged-chr15-89158180-4	chr15	89158079	89158279	+	683.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159521, intron 31 of 37)	intron (NM_001159521, intron 31 of 37)	4729.0	NR_106066	102465672.0		NR_106066	ENSMUSG00000106328	Mir7118	mmu-mir-7118	microRNA 7118	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-27477925-2	chr16	27477825	27478025	+	560.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	88969.0	NM_001289436	67501.0	Mm.258985	NM_026202	ENSMUSG00000038127	Ccdc50	C3orf6	coiled-coil domain containing 50	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-30026095-4	chr11	30025974	30026174	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146016)	promoter-TSS (NM_146016)	-41.0	NM_146016	237711.0	Mm.445271	NM_146016	ENSMUSG00000044072	Eml6	2900083P10Rik|C230094A16Rik|EMAP-6	echinoderm microtubule associated protein like 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-114820189-2	chr13	114820089	114820289	+	759.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_013826, intron 2 of 6)	URR1A|DNA|hAT-Charlie	1952.0	NM_001113374	17434.0	Mm.19027	NM_013826	ENSMUSG00000015536	Mocs2	AI415403	molybdenum cofactor synthesis 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-69674374-4	chr3	69674289	69674489	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47666.0	NM_133787	97112.0	Mm.21062	NM_133787	ENSMUSG00000027787	Nmd3	C87860	NMD3 ribosome export adaptor	protein-coding	5.16919846776886	5.14491784527634	5.09829924073239	4.86884620251321	4.64309471384696	4.89150900523578	3.3705574193338	4.46661320229105	-0.763273557031933	0.0447325099633705	0.304266761145956
Merged-chr6-113650288-4	chr6	113650178	113650378	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 2 of 11)	intron (NM_001113553, intron 2 of 11)	11811.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-93919731-3	chr10	93919670	93919870	+	658.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28568.0	NM_019648	56307.0	Mm.289329	NM_019648	ENSMUSG00000036112	Metap2	4930584B20Rik|A930035J23Rik|AI047573|AL024412|AU014659|Amp2|Mnpep|p67|p67eIF2	methionine aminopeptidase 2	protein-coding	0.691445972842754	0.953953930658528	0.317636913126554	0.312000911338526	0.304012482528447	0.96542616304844	0.319245600798525	0.757440803949075	0.121113206928843	0.948756691003354	1
Merged-chr11-6490311-4	chr11	6490186	6490386	+	981.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14210.0	NM_011221	19291.0	Mm.296150	NM_011221	ENSMUSG00000094483	Purb	2310015K15Rik|AA114818|Cager-2|D11Bwg0414e	purine rich element binding protein B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-99994628-3	chr12	99994525	99994725	+	965.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164426, intron 2 of 2)	intron (NM_001164426, intron 2 of 2)	30126.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-116512682-3	chr10	116512581	116512781	+	815.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037848, intron 4 of 4)	intron (NM_001037848, intron 4 of 4)	15268.0	NM_001359253	72068.0	Mm.351553	NM_028082	ENSMUSG00000020166	Cnot2	2600016M12Rik|2810470K03Rik|AA537049|AA959607|AW557563|C79650	CCR4-NOT transcription complex, subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-59585213-4	chr13	59585124	59585324	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045633)	promoter-TSS (NR_045633)	-1.0	NR_045633	319469.0	Mm.437992	NR_045633	ENSMUSG00000021557	A230056J06Rik	-	RIKEN cDNA A230056J06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-36289344-4	chr4	36289247	36289447	+	975.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001165999, intron 3 of 7)	intron (NM_001165999, intron 3 of 7)	356106.0	NR_030545	100124458.0		NR_030545	ENSMUSG00000077851	Mir876	Mirn876|mir-876|mmu-mir-876	microRNA 876	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-130796691-4	chr3	130796592	130796792	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66294.0	NM_001005859	68436.0	Mm.140568	NM_026724	ENSMUSG00000062006	Rpl34	1100001I22Rik	ribosomal protein L34	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-41685753-4	chr15	41685634	41685834	+	996.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152565, intron 3 of 17)	intron (NR_152565, intron 3 of 17)	-103261.0	NM_001358976	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41402768-4	chr19	41402665	41402865	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17695.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-51638558-2	chr2	51638458	51638658	+	561.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17B|LTR|ERVK	11047.0	NM_199158	387511.0	Mm.377918	NM_199158	ENSMUSG00000056115	Tas2r134	T2R134|Tas2r34	taste receptor, type 2, member 134	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-120481705-4	chr2	120481604	120481804	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109761, intron 2 of 20)	intron (NM_001109761, intron 2 of 20)	4795.0	NM_001109761	12335.0	Mm.458021	NM_007601	ENSMUSG00000079110	Capn3	AI323605|Capa-3|Capa3|Lp82|p94	calpain 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-118388243-4	chr1	118388163	118388363	+	999.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359346)	promoter-TSS (NM_001359346)	-795.0	NM_001359329	76707.0	Mm.138740	NM_029709	ENSMUSG00000064302	Clasp1	1700030C23Rik|5730583A19Rik|B130045P17Rik|CLASP1alpha	CLIP associating protein 1	protein-coding	3.85172173445998	3.53444055368491	3.58621175526693	3.12694519938584	4.14232722646303	3.56011374395305	3.61356934530687	3.14351388484572	0.178874852361082	0.737529385230061	0.998431161219273
Merged-chr11-11903643-4	chr11	11903535	11903735	+	898.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A2-int|LTR|ERVL-MaLR	-5491.0	NM_001190448	13195.0	Mm.12906	NM_016672	ENSMUSG00000020182	Ddc	Aadc	dopa decarboxylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-85286602-3	chr16	85286516	85286716	+	823.027771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-112909.0	NM_001198826	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	1.95151538831143	1.90127542292047	1.82817350771143	2.43889266050188	0.893498117818394	0.965315666829038	0.942856299075035	1.3508667274458	-3.88242293163006	0.00476810373380436	0.0645927239601775
Merged-chr17-26560738-2	chr17	26560638	26560838	+	787.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026170)	promoter-TSS (NM_026170)	-774.0	NM_026170	67458.0	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-136881156-2	chr4	136881056	136881256	+	770.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009777, intron 2 of 2)	intron (NM_009777, intron 2 of 2)	5021.0	NM_009777	12260.0	Mm.2570	NM_009777	ENSMUSG00000036905	C1qb	-	complement component 1, q subcomponent, beta polypeptide	protein-coding	1.22485759203473	0.286836946902827	0.27749859571798	0.270204540101393	1.24153965284234	0.703377633841198	0.279569228042282	0.271484596006766	0.43603598056767	0.825724420641582	1
Merged-chr4-34643947-2	chr4	34643847	34644047	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_151507, intron 8 of 19)	intron (NR_151507, intron 8 of 19)	28990.0	NM_181406	109093.0	Mm.22363	NM_181406	ENSMUSG00000028292	Rars2	1500002I10Rik|PRO1992|Rarsl	arginyl-tRNA synthetase 2, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-140984458-2	chr4	140984358	140984558	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2415.0	NM_029097	74772.0	Mm.205625	NM_029097	ENSMUSG00000036622	Atp13a2	1110012E06Rik|AA589443	ATPase type 13A2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-20937612-2	chr5	20937504	20937704	+	604.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080977, intron 1 of 7)	B2_Mm1a|SINE|B2	-13385.0	NR_030699	320770.0	Mm.491217	NR_030699	ENSMUSG00000101013	A630072M18Rik	Aptr	RIKEN cDNA A630072M18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-54448118-3	chr14	54448018	54448218	+	918.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-16029.0	NM_022993	65107.0	Mm.472719	NM_022993	ENSMUSG00000022175	Lrp10	Lrp9	low-density lipoprotein receptor-related protein 10	protein-coding	1.72921539534991	1.93869553849525	1.87301784283483	1.82054287312131	1.47707938194447	1.63587796946629	1.39564019642866	2.53389077567286	0.0885999817211512	0.931219445760586	0.998431161219273
Merged-chr6-86487973-4	chr6	86487858	86488058	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040292, exon 1 of 2)	non-coding (NR_040292, exon 1 of 2)	269.0	NR_040293	381792.0	Mm.333223	NR_040292	ENSMUSG00000101655	2310040G24Rik	-	RIKEN cDNA 2310040G24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-83395543-4	chr17	83395449	83395649	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357886, intron 1 of 21)	MTEa|LTR|ERVL-MaLR	44618.0	NM_001357886	78798.0	Mm.295565	NM_199466	ENSMUSG00000032624	Eml4	4930443C24Rik|AI644019	echinoderm microtubule associated protein like 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65195760-4	chr9	65195656	65195856	+	995.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18934.0	NM_177460	214424.0	Mm.31129	NM_177460	ENSMUSG00000032392	Parp16	ARTD15|BC055447|C79952|PARP-16	poly (ADP-ribose) polymerase family, member 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-4238136-3	chr7	4238038	4238238	+	954.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081239, exon 3 of 6)	exon (NM_001081239, exon 3 of 6)	384.0	NM_001081239	232801.0	Mm.258061	NM_001081239	ENSMUSG00000070873	Lilra5	E030017K20|EG232801|Gm4878|Lilrc1	leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 5	protein-coding	0.865294003047461	0.730183774459119	0.716300717458433	1.21656509623095	1.77605933471646	1.15959843889463	1.71973460837097	0.91073865429587	2.35429838312707	0.0987814501936541	0.488758884040376
Merged-chr2-30772092-4	chr2	30772030	30772230	+	939.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29607.0	NM_198000	73598.0	Mm.34166	NM_198000	ENSMUSG00000044320	1700001O22Rik	1700113K14Rik|4930549G18Rik	RIKEN cDNA 1700001O22 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-142340748-4	chr7	142340640	142340840	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177265, intron 3 of 3)	intron (NM_177265, intron 3 of 3)	31519.0	NM_177265	320802.0	Mm.154486	NM_177265	ENSMUSG00000045777	Ifitm10	6330512M04Rik|AI848576|DSPA3	interferon induced transmembrane protein 10	protein-coding	4.48321902056242	4.56594334631951	4.20419688745233	4.58016580815624	4.27468298347152	4.02499098168166	3.63230697680681	4.47282859130448	-0.422575059519082	0.300603758151191	0.801963340127147
Merged-chr13-37290904-4	chr13	37290792	37290992	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54453.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-87550844-4	chr17	87550731	87550931	+	871.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-85148.0	NM_008532	17075.0	Mm.4259	NM_008532	ENSMUSG00000045394	Epcam	CD326|EGP|EGP-2|Egp314|Ep-CAM|EpCAM1|GA733-2|Ly74|TROP1|Tacsd1|Tacstd1|gp40	epithelial cell adhesion molecule	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-17492369-4	chr16	17492259	17492459	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291070, intron 1 of 19)	intron (NM_001291070, intron 1 of 19)	438.0	NM_001291070	72168.0	Mm.40038	NM_175178	ENSMUSG00000022763	Aifm3	2810401C16Rik|AI840249|Aifl	apoptosis-inducing factor, mitochondrion-associated 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-8412978-4	chr6	8412870	8413070	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302353, intron 4 of 4)	intron (NM_001302353, intron 4 of 4)	96191.0	NR_040452	320312.0	Mm.374890	NR_040452	ENSMUSG00000087305	A430035B10Rik	2810488G03Rik	RIKEN cDNA A430035B10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-173083872-3	chr2	173083764	173083964	+	792.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	35661.0	NM_001081387	664799.0	Mm.389396	NM_001081387	ENSMUSG00000070495	Ctcfl	Boris	CCCTC-binding factor (zinc finger protein)-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-53303067-2	chr16	53302967	53303167	+	806.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-487323.0	NR_040495	73820.0	Mm.60493	NR_040495		4930404A05Rik	-	RIKEN cDNA 4930404A05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70769720-4	chr14	70769603	70769803	+	863.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3075.0	NM_023045	65246.0	Mm.152987	NM_023045	ENSMUSG00000022100	Xpo7	4930506C02Rik|BB164534|Ranbp16|exp7	exportin 7	protein-coding	-1.11651751721408	-1.22964054751173	-1.23965385643774	-0.955867492901793	-1.11290731241097	-1.22747062169595	-1.23738706278237	-1.24640677427394	-1.15172394502503	0.713766605708481	1
Merged-chr2-32498606-2	chr2	32498506	32498706	+	805.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19A|LTR|ERVK	-36753.0	NM_153560	98952.0	Mm.4065	NM_153560	ENSMUSG00000039157	Fam102a	AI426465|C230093N12Rik|Eeig1	family with sequence similarity 102, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-83830127-4	chr18	83830021	83830221	+	996.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	256441.0	NM_001081300	110796.0	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-30714804-4	chr13	30714726	30714926	+	990.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34407.0	NM_001347508	16364.0	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-37048781-3	chr19	37048667	37048867	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198300, intron 9 of 10)	intron (NM_198300, intron 9 of 10)	122688.0	NM_001080706	107182.0	Mm.295062	NM_001080706	ENSMUSG00000040565	Btaf1	AI414500|AI447930|E430027O22Rik|TAF170	B-TFIID TATA-box binding protein associated factor 1	protein-coding	2.57614573391128	3.1825179686338	3.23549482687512	3.07331928955936	2.09596488637196	2.91025706275911	2.70038096568966	2.35727585878574	-0.945008060811077	0.179021389962409	0.649697107310641
Merged-chr5-92440867-2	chr5	92440767	92440967	+	851.25	f1_balb.idr|f1_c57bl6.idr	TTS (NM_007644)	TTS (NM_007644)	-5668.0	NM_183392	269113.0	Mm.275289	NM_183392	ENSMUSG00000034826	Nup54	3110079L04Rik|54kDa	nucleoporin 54	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-70989500-2	chr2	70989400	70989600	+	578.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145524, intron 3 of 9)	intron (NM_145524, intron 3 of 9)	28874.0	NM_001110512	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-74895402-2	chr1	74895302	74895502	+	671.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2259.0	NM_021541	12958.0	Mm.86656	NM_021541	ENSMUSG00000006546	Cryba2	E130107M19Rik	crystallin, beta A2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-136553955-4	chr6	136553862	136554062	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019426, intron 1 of 14)	intron (NM_019426, intron 1 of 14)	35111.0	NM_019426	54343.0	Mm.173271	NM_019426	ENSMUSG00000030213	Atf7ip	2610204M12Rik|AM|Mcaf1	activating transcription factor 7 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-40630270-4	chr19	40630173	40630373	+	985.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304721, intron 1 of 9)	L1M4a1|LINE|L1	17907.0	NM_001304721	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-41564806-5	chr3	41564671	41564871	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001130186)	promoter-TSS (NM_001130186)	-109.0	NM_001130186	269424.0	Mm.286285	NM_172303	ENSMUSG00000025764	Jade1	AU041499|D530048A03Rik|Phf17|mKIAA1807	jade family PHD finger 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-149791725-4	chr4	149791646	149791846	+	836.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17479.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118874712-1	chr9	118874612	118874812	+	552.0	f1_balb.idr	intron (NM_001113514, intron 11 of 13)	B3|SINE|B2	-51824.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	2.008353444968	3.17337695433241	2.7076002167835	2.2672192046306	2.41312567110586	3.19605568659143	2.72874542348864	2.27886438444614	0.172003298381407	0.823948620273509	0.998431161219273
Merged-chr5-135250583-2	chr5	135250483	135250683	+	713.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_010246, exon 1 of 1)	exon (NM_010246, exon 1 of 1)	464.0	NM_010246	14371.0	Mm.6256	NM_010246	ENSMUSG00000049551	Fzd9	mfz9	frizzled class receptor 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-10107052-4	chr13	10106927	10107127	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033269, intron 3 of 4)	intron (NM_033269, intron 3 of 4)	253776.0	NM_033269	12671.0	Mm.342315	NM_033269	ENSMUSG00000046159	Chrm3	Chrm-3|M3|M3R	cholinergic receptor, muscarinic 3, cardiac	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16174953-2	chr7	16174853	16175053	+	878.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302472)	promoter-TSS (NM_001302472)	-442.0	NM_001277988	17537.0	Mm.360516	NM_008627	ENSMUSG00000041420	Meis3	AI573393|Mrg2	Meis homeobox 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-116327415-4	chr3	116327283	116327483	+	909.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001173553, intron 7 of 13)	intron (NM_001173553, intron 7 of 13)	26861.0	NM_001355646	229776.0	Mm.17647	NM_001080818	ENSMUSG00000033502	Cdc14a	A830059A17Rik|CDC14A2|CDC14a1|Cdc14	CDC14 cell division cycle 14A	protein-coding	2.63837830035825	2.20427590458321	3.02938787393926	2.35924804749296	2.25525800180932	1.51368909736314	2.88452340490625	3.2305131211311	0.0753625014523779	0.928612321185639	0.998431161219273
Merged-chr2-167675361-2	chr2	167675261	167675461	+	830.900024	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13554.0	NM_009883	12608.0	Mm.439656	NM_009883	ENSMUSG00000056501	Cebpb	C/EBPbeta|CRP2|IL-6DBP|LAP|LIP|NF-IL6|NF-M|Nfil6	CCAAT/enhancer binding protein (C/EBP), beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-13761145-3	chr9	13761039	13761239	+	780.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_024025, intron 1 of 15)	ID_B1|SINE|B4	11958.0	NM_023858	77116.0	Mm.210405	NM_023858	ENSMUSG00000031918	Mtmr2	6030445P13Rik	myotubularin related protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-43885214-4	chr5	43885127	43885327	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007646, intron 1 of 7)	intron (NM_007646, intron 1 of 7)	16418.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-103485813-2	chr2	103485696	103485896	+	677.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009804)	promoter-TSS (NM_009804)	-643.0	NM_009804	12359.0	Mm.4215	NM_009804	ENSMUSG00000027187	Cat	2210418N07|Cas-1|Cas1|Cs-1	catalase	protein-coding	1.95921961864015	0.468946769321849	0.455199320803479	0.842707621823149	0.791732622607807	0.471998539360861	0.4582615431678	1.25499190689843	-1.24125396358653	0.457686697213209	0.919570891419578
Merged-chr7-46999141-4	chr7	46999007	46999207	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175318, intron 2 of 5)	intron (NM_175318, intron 2 of 5)	9307.0	NM_175318	101685.0	Mm.155687	NM_175318	ENSMUSG00000049516	Spty2d1	5830435K17Rik|AI852426|P16H6	SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-123049934-4	chr6	123049875	123050075	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001190310)	promoter-TSS (NM_001190310)	13.0	NM_001190310	69810.0	Mm.333374	NM_027218	ENSMUSG00000030147	Clec4b1	1810046I24Rik|Aplra2|Clec4b|DCAR|DCARbeta|Dcar2	C-type lectin domain family 4, member b1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-75806523-2	chr14	75806423	75806623	+	612.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-19486.0	NM_026232	67554.0	Mm.46067	NM_026232	ENSMUSG00000022003	Slc25a30	4933433D23Rik|AV025504|AV221431|AW319655|KMCP1	solute carrier family 25, member 30	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-75986526-2	chr2	75986426	75986626	+	737.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4559.0	NM_030188	78802.0	Mm.282339	NM_030188	ENSMUSG00000075271	Ttc30a1	4930506L13Rik	tetratricopeptide repeat domain 30A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89354990-4	chr3	89354895	89355095	+	880.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029974, intron 9 of 15)	MamRep564|Unknown|Unknown	-4967.0	NM_009614	11490.0	Mm.274049	NM_009614	ENSMUSG00000028041	Adam15	AD56|MDC15	a disintegrin and metallopeptidase domain 15 (metargidin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-72096543-2	chr7	72096443	72096643	+	834.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001024703, intron 20 of 22)	RMER1B|Other|Other	-134525.0	NR_126483	102640608.0	Mm.399138	NR_126483	ENSMUSG00000108480	Gm36633	-	predicted gene, 36633	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-53688858-3	chr15	53688766	53688966	+	781.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177225, intron 3 of 4)	intron (NM_177225, intron 3 of 4)	-74587.0	NR_039538	100628567.0		NR_039538	ENSMUSG00000104794	Mir28c	mmu-mir-28c	microRNA 28c	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-39101974-3	chr16	39101871	39102071	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	86979.0	NR_153800	102640746.0		NR_153800		Gm36742	-	predicted gene, 36742	ncRNA	1.83833512915483	2.10271143764392	3.30148958548953	2.73453772927099	1.63313616554048	3.59596433459249	3.47752268521096	3.91647998561232	1.27911962133647	0.107906313917864	0.513889899862342
Merged-chr15-59003863-4	chr15	59003771	59003971	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144800, intron 3 of 14)	intron (NM_144800, intron 3 of 14)	70061.0	NM_023172	66218.0	Mm.322294	NM_023172	ENSMUSG00000022354	Ndufb9	1190008J14Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-142551161-4	chr5	142551037	142551237	+	913.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289588)	promoter-TSS (NM_001289588)	-39.0	NM_001289588	231858.0	Mm.33766	NM_178702	ENSMUSG00000029576	Radil	AI536456|D930005D10Rik	Ras association and DIL domains	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-27674622-4	chr7	27674562	27674762	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290528)	promoter-TSS (NM_001290528)	1.0	NM_198417	112415.0	Mm.145362	NM_198417	ENSMUSG00000057093	Zfp607b	C030039L03Rik	zinc finger protein 607B	protein-coding	0.661799440582212	0.396136144761285	0.387510512615036	1.05898679317037	0.669298780275968	1.28251057038171	0.585806657882808	0.3819794442966	0.621985592469349	0.716492463588455	1
Merged-chr1-60016369-4	chr1	60016266	60016466	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357296, intron 3 of 10)	intron (NM_001357296, intron 3 of 10)	26756.0	NM_001357296	70375.0	Mm.17834	NM_027407	ENSMUSG00000026018	Ica1l	1700030B17Rik|Als2cr15|b2b3465Clo	islet cell autoantigen 1-like	protein-coding	5.13337341009894	4.36172410063795	4.90226403252625	4.64567017374343	5.72254176700357	5.17135605343921	5.55881031069073	5.1900472493885	0.747595096298809	0.0200963566904405	0.179937378785004
Merged-chr6-144433737-2	chr6	144433637	144433837	+	831.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-224169.0	NM_001243163	20678.0	Mm.1752	NM_011444	ENSMUSG00000041540	Sox5	A730017D01Rik|AI528773	SRY (sex determining region Y)-box 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-26637886-4	chr11	26637806	26638006	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43986.0	NM_001252447	69922.0	Mm.285351	NM_027260	ENSMUSG00000064090	Vrk2	2810003O05Rik|AI447698	vaccinia related kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34956642-2	chr17	34956542	34956742	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010478, exon 1 of 1)	3' UTR (NM_010478, exon 1 of 1)	2596.0	NM_010478	15511.0	Mm.372314	NM_010478	ENSMUSG00000090877	Hspa1b	Hsp70|Hsp70-1|Hsp70.1|hsp68	heat shock protein 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-134342771-4	chr5	134342683	134342883	+	936.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16329.0	NR_039544	100628570.0		NR_039544	ENSMUSG00000093311	Mir3965	mmu-mir-3965|mu-mir-3965	microRNA 3965	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84638806-3	chr8	84638721	84638921	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007578, exon 46 of 47)	exon (NM_007578, exon 46 of 47)	24031.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-45795849-4	chr4	45795724	45795924	+	993.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3198.0	NM_028270	72535.0	Mm.331583	NM_028270	ENSMUSG00000035561	Aldh1b1	2700007F14Rik	aldehyde dehydrogenase 1 family, member B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-143389368-4	chr4	143389219	143389419	+	740.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5122.0	NM_031377	83491.0	Mm.190607	NM_031377	ENSMUSG00000041805	Pramel1	-	preferentially expressed antigen in melanoma-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-123465813-2	chr9	123465713	123465913	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12888.0	NM_013860	29806.0	Mm.10987	NM_013860	ENSMUSG00000025239	Limd1	AW822033|D9Ertd192e	LIM domains containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-92695611-4	chr16	92695524	92695724	+	853.81665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001111021, exon 3 of 8)	exon (NM_001111021, exon 3 of 8)	1705.0	NM_001111023	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-31022574-2	chr2	31022474	31022674	+	779.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_028846)	TTS (NM_028846)	40295.0	NM_028846	74270.0	Mm.346654	NM_028846	ENSMUSG00000026854	Usp20	1700055M05Rik|AI467231|Vdu2	ubiquitin specific peptidase 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-102568876-2	chr14	102568776	102568976	+	633.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	413756.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141170223-2	chr4	141170123	141170323	+	624.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172518, intron 2 of 9)	intron (NM_172518, intron 2 of 9)	22301.0	NM_172518	213499.0	Mm.28865	NM_172518	ENSMUSG00000028920	Fbxo42	6720460I06Rik|mKIAA1332	F-box protein 42	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98026125-2	chr11	98026025	98026225	+	643.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159483)	promoter-TSS (NM_001159483)	-585.0	NM_001159483	19921.0	Mm.10247	NM_009078	ENSMUSG00000017404	Rpl19	-	ribosomal protein L19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127210887-2	chr7	127210787	127210987	+	898.625	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016754)	promoter-TSS (NM_016754)	-721.0	NM_016754	17907.0	Mm.14526	NM_016754	ENSMUSG00000030672	Mylpf	2410014J02Rik|MLC-2|Mlc2	myosin light chain, phosphorylatable, fast skeletal muscle	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-17388595-2	chr19	17388495	17388695	+	548.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5448.0	NM_019437	54391.0	Mm.7013	NM_019437	ENSMUSG00000024712	Rfk	0610038L10Rik|AF031381|KOI-4	riboflavin kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19130683-2	chr7	19130583	19130783	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175530, intron 1 of 1)	intron (NM_175530, intron 1 of 1)	10824.0	NM_175530	243867.0	Mm.230830	NM_175530	ENSMUSG00000050428	Fbxo46	20D7-FC4|4932704E22Rik|Fbxo34l	F-box protein 46	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-114924851-8	chr5	114924487	114924687	+	864.59375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359946, intron 1 of 4)	intron (NM_001359946, intron 1 of 4)	1347.0	NM_001359945	231655.0	Mm.95479	NM_145209	ENSMUSG00000041827	Oasl1	7530414C13Rik|oasl9	2'-5' oligoadenylate synthetase-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-41154936-1	chr15	41154836	41155036	+	788.666687	f0_balb.idr	Intergenic	Intergenic	-18765.0	NR_151516	100418302.0		NR_151516		4930555K19Rik	-	leucine rich repeat and sterile alpha motif containing 1 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-34004540-1	chr1	34004440	34004640	+	613.0	f0_balb.idr	intron (NM_001276764, intron 3 of 102)	intron (NM_001276764, intron 3 of 102)	-7285.0	NM_133833	13518.0	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4099268-4	chr19	4099175	4099375	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_075078)	promoter-TSS (NR_075078)	-723.0	NR_075078	18739.0	Mm.1860	NM_008851	ENSMUSG00000024851	Pitpnm1	DRES9|Mpt-1|Nir-2|PITPnm 1|Pitpnm|R75447|Rd9|RdgB|RdgB1	phosphatidylinositol transfer protein, membrane-associated 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-42518322-2	chr19	42518244	42518444	+	750.625	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_177464)	promoter-TSS (NM_177464)	-461.0	NM_177464	52013.0	Mm.254169	NM_177464	ENSMUSG00000025184	R3hcc1l	1700036B12Rik|AI450607|C10orf28|D19Ertd386e|GIDRP86|Gidrp88	R3H domain and coiled-coil containing 1 like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-39171885-4	chr10	39171791	39171991	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8097.0	NM_001127376	327743.0	Mm.208111	NM_001127376	ENSMUSG00000062074	Wisp3	CCN6|Gm735|WISP-3	WNT1 inducible signaling pathway protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-95697353-2	chr8	95697253	95697453	+	703.416626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5684.0	NM_001195006	234593.0	Mm.29846	NM_145602	ENSMUSG00000036564	Ndrg4	D8Bwg1337e|Ndr1-rs|Ndr4|R74996|SMAP-8	N-myc downstream regulated gene 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-81039035-2	chr3	81038935	81039135	+	623.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019971, intron 1 of 5)	intron (NM_019971, intron 1 of 5)	2619.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-95088421-2	chr10	95088321	95088521	+	580.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57404.0	NR_131146	628062.0		NR_131146	ENSMUSG00000112481	Gm29684	-	predicted gene, 29684	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-92666956-6	chr7	92666889	92667089	+	704.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029078, intron 1 of 15)	intron (NM_029078, intron 1 of 15)	2923.0	NM_029078	74737.0	Mm.288645	NM_029078	ENSMUSG00000041328	Pcf11	2500001H09Rik|5730417B17Rik|C77803	PCF11 cleavage and polyadenylation factor subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-93336401-4	chr15	93336314	93336514	+	932.2666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_028315, exon 2 of 5)	non-coding (NR_028315, exon 2 of 5)	521.0	NR_028315	67057.0	Mm.4714	NM_024189	ENSMUSG00000022634	Yaf2	2810021M11Rik	YY1 associated factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-136173781-2	chr4	136173681	136173881	+	813.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_177733, intron 1 of 6)	intron (NM_177733, intron 1 of 6)	1507.0	NM_177733	242705.0	Mm.307932	NM_177733	ENSMUSG00000018983	E2f2	E2F-2	E2F transcription factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-34579682-2	chr1	34579583	34579783	+	603.25	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_213727)	promoter-TSS (NM_213727)	-10.0	NM_213727	211383.0	Mm.330696	NM_213727	ENSMUSG00000045174	Amer3	9430069J07Rik|Fam123c	APC membrane recruitment 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-172426976-4	chr1	172426879	172427079	+	976.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-48381.0	NM_029612	98365.0	Mm.150050	NM_029612	ENSMUSG00000026548	Slamf9	2310026I04Rik|AI462096|CD2F-10|CD84-H1|Cd2f10|SF2001	SLAM family member 9	protein-coding	2.9154310825913	3.65517939692569	2.93753880483022	3.71454189670426	3.72987196688254	3.90226950397633	2.82577302320079	3.73268353119867	0.388960458033201	0.497725774111821	0.936897994490085
Merged-chr17-78735820-2	chr17	78735757	78735957	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011500, intron 1 of 17)	intron (NM_011500, intron 1 of 17)	703.0	NM_011500	268980.0	Mm.311915	NM_011500	ENSMUSG00000024077	Strn	AU022939|D130055P19	striatin, calmodulin binding protein	protein-coding	0.864259140604929	0.864515764749095	0.497201110991159	0.658753897388545	0.482111909719697	0.872492981423266	0.836727283268297	1.22862749711586	0.858259752935136	0.58854047018294	1
Merged-chr12-36117328-1	chr12	36117228	36117428	+	584.0	f0_balb.idr	intron (NM_025840, intron 6 of 11)	intron (NM_025840, intron 6 of 11)	26949.0	NR_003649	432649.0	Mm.347860	NM_001014396	ENSMUSG00000059301	Gm5434	EG432649	ubiquitin-conjugating enzyme E2F (putative) pseudogene	pseudo	0.463245134833401	0.496669407680403	1.00872649684868	1.09082579040702	0.465379418327391	0.499077490674052	1.01971262253028	1.5525624869413	0.786032901175945	0.649302930536908	0.985422869512088
Merged-chr9-94692563-2	chr9	94692462	94692662	+	855.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_177909, intron 2 of 15)	intron (NM_177909, intron 2 of 15)	22670.0	NM_177909	331004.0	Mm.326125	NM_177909	ENSMUSG00000031129	Slc9a9	5730527A11Rik|9930105B05|AI854429|Nhe9	solute carrier family 9 (sodium/hydrogen exchanger), member 9	protein-coding	3.45241239395037	3.09206042268921	3.98948306201225	3.56265177582914	3.08160133658893	4.1456146963191	3.4421879998013	3.78437243213117	0.149952069545633	0.781840694347715	0.998431161219273
Merged-chr9-107635496-4	chr9	107635391	107635591	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008138)	promoter-TSS (NM_008138)	-149.0	NM_008138	14678.0	Mm.196464	NM_008138	ENSMUSG00000032562	Gnai2	C76432|Galphai2|Gia|Gnai-2	guanine nucleotide binding protein (G protein), alpha inhibiting 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-32350596-2	chr11	32350496	32350696	+	788.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177364, intron 1 of 12)	MLT1A1|LTR|ERVL-MaLR	2785.0	NM_177364	268396.0	Mm.227616	NM_177364	ENSMUSG00000040711	Sh3pxd2b	G431001E03Rik|TSK4|fad49	SH3 and PX domains 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-79576902-2	chr3	79576802	79577002	+	559.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8710.0	NR_152118	75879.0	Mm.410800	NR_152118		4930589L23Rik	-	RIKEN cDNA 4930589L23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-20727083-4	chr9	20726997	20727197	+	736.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357635)	promoter-TSS (NM_001357635)	-94.0	NM_001357635	244723.0	Mm.293552	NM_173777	ENSMUSG00000032172	Olfm2	A030009A06Rik	olfactomedin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5051932-2	chr17	5051832	5052032	+	805.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 2 of 19)	intron (NM_001085355, intron 2 of 19)	56858.0	NM_001085355	239985.0	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-75871323-4	chr5	75871232	75871432	+	888.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	107096.0	NM_010612	16542.0	Mm.285	NM_010612	ENSMUSG00000062960	Kdr	6130401C07|Flk-1|Flk1|Krd-1|Ly73|VEGFR-2|VEGFR2|orv|sVEGFR-2	kinase insert domain protein receptor	protein-coding	0.213656300682109	0.262144650856675	0.246859054643975	0.234682685784314	0.441612761104702	1.59978149240474	1.7639235023566	0.236835180903185	4.94811797646373	0.00605594909269515	0.076969573320081
Merged-chr7-4237676-4	chr7	4237605	4237805	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081239)	promoter-TSS (NM_001081239)	-49.0	NM_001081239	232801.0	Mm.258061	NM_001081239	ENSMUSG00000070873	Lilra5	E030017K20|EG232801|Gm4878|Lilrc1	leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-45573318-4	chr17	45573197	45573397	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008302)	promoter-TSS (NM_008302)	-36.0	NM_008302	15516.0	Mm.2180	NM_008302	ENSMUSG00000023944	Hsp90ab1	90kDa|AL022974|C81438|Hsp84|Hsp84-1|Hsp90|Hspcb	heat shock protein 90 alpha (cytosolic), class B member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-11296616-2	chr16	11296516	11296716	+	569.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	AT_rich|Low_complexity|Low_complexity	-17193.0	NM_011608	21935.0	Mm.12935	NM_011608	ENSMUSG00000022496	Tnfrsf17	BCM|BCMA|Tnfrsf13|Tnfrsf13a	tumor necrosis factor receptor superfamily, member 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-24714029-2	chr8	24713929	24714129	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001324489, intron 7 of 21)	B3|SINE|B2	11823.0	NM_009619	11497.0	Mm.5168	NM_009619	ENSMUSG00000031553	Adam3	Cyrn1|Taz83|tMDC	a disintegrin and metallopeptidase domain 3 (cyritestin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-53782445-2	chr11	53782345	53782545	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11972.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-23562462-4	chr13	23562343	23562543	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178205)	promoter-TSS (NM_178205)	-78.0	NM_178205	319151.0	Mm.261658	NM_178205	ENSMUSG00000069273	Hist1h3e	H3-f|H3.1	histone cluster 1, H3e	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-95055118-4	chr8	95055036	95055236	+	996.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001042715)	promoter-TSS (NM_001042715)	33.0	NM_001042715	330830.0	Mm.277112	NM_001042715	ENSMUSG00000031786	Drc7	Ccdc135|Gm770|SRG-L|SRG-S	dynein regulatory complex subunit 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-151339046-4	chr1	151338964	151339164	+	889.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5422.0	NM_001359262	117198.0	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-78314552-4	chr3	78314456	78314656	+	890.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR26_Mus|LTR|ERVK	830331.0	NM_001310536	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-63694064-4	chr18	63693939	63694139	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR44E|LTR|ERVK	-1680.0	NM_016792	53382.0	Mm.19169	NM_016792	ENSMUSG00000024583	Txnl1	32kDa|TRP32|Txnl	thioredoxin-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-26201098-4	chr11	26201008	26201208	+	868.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027973, intron 1 of 5)	intron (NR_027973, intron 1 of 5)	-1132.0	NR_105791	102466154.0		NR_105791	ENSMUSG00000099015	Mir6372	Gm27358|mmu-mir-6372	microRNA 6372	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-115110566-2	chr8	115110466	115110666	+	565.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019573, intron 8 of 8)	intron (NM_019573, intron 8 of 8)	596328.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132944307-4	chr4	132944213	132944413	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21762.0	NM_001163792	230789.0	Mm.11473	NM_145553	ENSMUSG00000028878	Fam76a	-	family with sequence similarity 76, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-80005141-2	chr17	80005041	80005241	+	557.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57127.0	NR_152119	72692.0	Mm.64579	NM_144802	ENSMUSG00000024095	Hnrnpll	2510028H02Rik|2810036L13Rik|AI256697|AI852082|Hnrpll	heterogeneous nuclear ribonucleoprotein L-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-31211365-3	chr6	31211244	31211444	+	844.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110469, intron 1 of 3)	PB1D11|SINE|Alu	7130.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-84126106-2	chr6	84126006	84126206	+	712.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077694, intron 30 of 54)	intron (NM_001077694, intron 30 of 54)	106720.0	NM_021469	26903.0	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-109902034-2	chr2	109901934	109902134	+	775.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_033473)	TTS (NR_033473)	11156.0	NM_011699	22343.0	Mm.235300	NM_011699	ENSMUSG00000027162	Lin7c	9130007B12Rik|AI303698|AU019331|AW125731|D2Ertd520e|LIN-7-C|LIN-7C|MALS-3|Veli3	lin-7 homolog C (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84709888-2	chr8	84709808	84710008	+	767.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081982, intron 9 of 9)	intron (NM_001081982, intron 9 of 9)	8451.0	NM_008535	17095.0	Mm.4925	NM_008535	ENSMUSG00000034041	Lyl1	Lyl-1|bHLHa18	lymphoblastomic leukemia 1	protein-coding	-0.296255411011612	-0.283682645774264	0.153318063631045	-0.290993053747025	-0.0326406680903398	-0.282749789434572	0.274688063343543	-0.290438152721331	0.934653388287302	0.70538757278228	1
Merged-chr3-96725069-2	chr3	96724969	96725169	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028925, intron 2 of 14)	RMER4A|LTR|ERVK	2370.0	NM_028925	74414.0	Mm.276043	NM_028925	ENSMUSG00000028099	Polr3c	4933407E01Rik|RPC3|RPC62	polymerase (RNA) III (DNA directed) polypeptide C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-61514208-3	chr2	61514103	61514303	+	959.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64383.0	NM_011529	21353.0	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-79882526-2	chr7	79882426	79882626	+	583.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_009682, exon 5 of 6)	exon (NM_009682, exon 5 of 6)	-34316.0	NM_008486	16790.0	Mm.4487	NM_008486	ENSMUSG00000039062	Anpep	AP-M|AP-N|Apn|Cd13|P150	alanyl (membrane) aminopeptidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-21048067-1	chr14	21047967	21048167	+	580.0	f0_balb.idr	intron (NM_018829, intron 1 of 8)	PB1|SINE|Alu	4375.0	NM_018829	55946.0	Mm.376269	NM_018829	ENSMUSG00000021824	Ap3m1	1200013D09Rik|C78982|R75378	adaptor-related protein complex 3, mu 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-97957698-3	chr3	97957614	97957814	+	947.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033779, intron 1 of 1)	RSINE1|SINE|B4	27541.0	NM_001033779	433632.0	Mm.212421	NM_001033779		Gm5544	EG433632	predicted gene 5544	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-54949255-2	chr13	54949155	54949355	+	700.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311128)	promoter-TSS (NM_001311128)	-156.0	NM_153131	107448.0	Mm.23573	NM_153131	ENSMUSG00000025876	Unc5a	Unc5h1|mKIAA1976	unc-5 netrin receptor A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-86878735-4	chr8	86878633	86878833	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030563, intron 1 of 6)	intron (NM_030563, intron 1 of 6)	6525.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-83655158-3	chr13	83655062	83655262	+	839.0499880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347576, intron 8 of 10)	intron (NM_001347576, intron 8 of 10)	-66219.0	NR_152244	320203.0	Mm.245636	NM_177100	ENSMUSG00000050334	C130071C03Rik	2810449C10Rik|ECONEXIN|EyeLinc1|Visc-1	RIKEN cDNA C130071C03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-108079635-4	chr11	108079530	108079730	+	968.68335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011101, intron 3 of 16)	intron (NM_011101, intron 3 of 16)	82782.0	NR_106082	102465705.0		NR_106082	ENSMUSG00000098989	Mir7223	Gm28009|mmu-mir-7223	microRNA 7223	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-132516423-3	chr2	132516305	132516505	+	832.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028286, intron 2 of 3)	ORR1A2|LTR|ERVL-MaLR	25677.0	NR_028286	70371.0	Mm.394667	NR_028286	ENSMUSG00000086379	1700026D11Rik	-	RIKEN cDNA 1700026D11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-4189248-4	chr12	4189150	4189350	+	773.012512	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159537, intron 3 of 21)	intron (NM_001159537, intron 3 of 21)	44715.0	NM_134046	52504.0	Mm.70546	NM_134046	ENSMUSG00000020652	Cenpo	2810429O05Rik|8430427C03Rik|D12Ertd482e	centromere protein O	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-60833974-2	chr10	60833874	60834074	+	879.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-2393.0	NM_001359273	107449.0	Mm.290433	NM_029770	ENSMUSG00000020099	Unc5b	6330415E02Rik|A630020F16|D10Bwg0792e|Unc5h2	unc-5 netrin receptor B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122640208-2	chr5	122640108	122640308	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-3703.0	NM_001038839	18439.0	Mm.42026	NM_011027	ENSMUSG00000029468	P2rx7	AI467586|P2X(7)|P2X7R	purinergic receptor P2X, ligand-gated ion channel, 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-77591066-3	chr10	77590954	77591154	+	766.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145925, intron 3 of 5)	intron (NM_145925, intron 3 of 5)	9399.0	NM_145925	108705.0	Mm.28853	NM_145925	ENSMUSG00000009291	Pttg1ip	1810010L20Rik|AI314311|AU018448|C79540|PBF	pituitary tumor-transforming 1 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-50292922-4	chr17	50292856	50293056	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010021, intron 1 of 10)	CpG	664.0	NM_010021	13164.0	Mm.280641	NM_010021	ENSMUSG00000010592	Dazl	Daz-like|Dazh|Dazl1|Dazla|Tpx-2|Tpx2	deleted in azoospermia-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-25967500-3	chr16	25967393	25967593	+	628.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173379, intron 13 of 14)	intron (NM_173379, intron 13 of 14)	138291.0	NM_173379	210530.0	Mm.326869	NM_173379	ENSMUSG00000038168	P3h2	4832416N06|AW553532|Leprel1|Mlat4	prolyl 3-hydroxylase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-146560617-1	chr3	146560517	146560717	+	750.333313	f0_balb.idr	Intergenic	Intergenic	-36532.0	NM_009474	22262.0	Mm.10865	NM_009474	ENSMUSG00000028186	Uox	AI663847	urate oxidase	protein-coding	-0.140802858649576	-0.126723757526283	-0.131347102812274	-0.134906904621428	0.123409842667141	0.0654418025043011	0.532449481884762	0.164063974372786	3.81381225998341	0.0763269049198105	1
Merged-chr12-55421460-4	chr12	55421344	55421544	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	22619.0	NM_011968	26443.0	Mm.30210	NM_011968	ENSMUSG00000021024	Psma6	IOTA	proteasome (prosome, macropain) subunit, alpha type 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-14571659-2	chr8	14571559	14571759	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172910, intron 4 of 15)	RLTR23|LTR|ERV1	-316877.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-84805780-2	chr15	84805680	84805880	+	822.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356573, intron 3 of 12)	intron (NM_001356573, intron 3 of 12)	49319.0	NM_001356573	271305.0	Mm.101022	NM_001081166	ENSMUSG00000016624	Phf21b	A730032D07Rik	PHD finger protein 21B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-6842382-2	chr16	6842282	6842482	+	602.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359730, intron 4 of 15)	intron (NM_001359730, intron 4 of 15)	-196988.0	NM_001359729	268859.0	Mm.370334	NM_021477	ENSMUSG00000008658	Rbfox1	A2bp|A2bp1|Hrnbp1|fox-1	RNA binding protein, fox-1 homolog (C. elegans) 1	protein-coding	-1.06997269762433	-1.30473905204845	-1.3145270772132	-1.32256725251374	-1.06385251204029	-1.30261794616352	-1.3123112828633	-1.32112806497905	0.0394047164033882	0.991001358494878	1
Merged-chr2-121271492-4	chr2	121271390	121271590	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290830)	promoter-TSS (NM_001290830)	-83.0	NM_013735	27223.0	Mm.215389	NM_013735	ENSMUSG00000043909	Trp53bp1	53BP1|Tp53bp1|m53BP1|p53BP1	transformation related protein 53 binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-150140673-4	chr5	150140574	150140774	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-119256.0	NM_172887	320365.0	Mm.216590	NM_172887	ENSMUSG00000056602	Fry	13CDNA73|9330186A19Rik|AF346502|AI462658|C87180|D930046M03|cg003|mKIAA4143	FRY microtubule binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-110473624-4	chr11	110473510	110473710	+	854.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356352, intron 1 of 11)	intron (NM_001356352, intron 1 of 11)	-4905.0	NM_001356347	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-10733368-3	chr10	10733294	10733494	+	934.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114333, intron 6 of 9)	intron (NM_001114333, intron 6 of 9)	-17652.0	NR_046010	78056.0	Mm.271285	NR_046010	ENSMUSG00000112730	4930567K20Rik	1700038H22Rik	RIKEN cDNA 4930567K20 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-139068413-1	chr1	139068313	139068513	+	975.0	f0_balb.idr	intron (NM_001166501, intron 9 of 21)	GA-rich|Low_complexity|Low_complexity	90756.0	NR_108103	78229.0	Mm.437838	NR_108103	ENSMUSG00000104900	4930596I21Rik	-	RIKEN cDNA 4930596I21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118651057-4	chr9	118650971	118651171	+	947.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 4 of 27)	intron (NM_133721, intron 4 of 27)	44362.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152619994-3	chr1	152619868	152620068	+	784.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346119, intron 2 of 17)	intron (NM_001346119, intron 2 of 17)	5249.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81334747-2	chr10	81334647	81334847	+	731.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009325, exon 4 of 4)	3' UTR (NM_009325, exon 4 of 4)	6044.0	NM_001277265	21390.0	Mm.4545	NM_009325	ENSMUSG00000034881	Tbxa2r	TP|TXA2-R	thromboxane A2 receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-108711224-2	chr8	108711124	108711324	+	806.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3420.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-66876719-3	chr9	66876640	66876840	+	954.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	-42034.0	NM_026674	68318.0	Mm.284229	NM_026674	ENSMUSG00000053040	Aph1c	0610008A10Rik|APH-1b|Aph1b	aph1 homolog C, gamma secretase subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-21714928-4	chr13	21714820	21715020	+	952.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_178199)	TTS (NM_178199)	1223.0	NM_178199	319185.0		NM_178199	ENSMUSG00000094338	Hist1h2bl	H2b-291a	histone cluster 1, H2bl	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-8827256-2	chr5	8827156	8827356	+	678.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011075, intron 15 of 27)	intron (NM_011075, intron 15 of 27)	-28733.0	NR_152132	330031.0	Mm.389059	NR_152132		Gm5106	A230021K14|EG330031	predicted gene 5106	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-25279499-4	chr10	25279386	25279586	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018747, intron 3 of 7)	intron (NM_018747, intron 3 of 7)	19677.0	NM_018747	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-88726099-3	chr4	88726022	88726222	+	630.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-3614.0	NM_172871	242521.0	Mm.260601	NM_172871	ENSMUSG00000070923	Klhl9	8030469P05|C530050O22Rik|mKIAA1354	kelch-like 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-99608484-4	chr12	99608399	99608599	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_136760, intron 2 of 3)	intron (NR_136760, intron 2 of 3)	19475.0	NR_045288	73457.0	Mm.383439	NR_045288	ENSMUSG00000100211	1700064M15Rik	-	RIKEN cDNA 1700064M15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-32285334-4	chr18	32285227	32285427	+	939.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44996.0	NM_133658	13872.0	Mm.282335	NM_133658	ENSMUSG00000024382	Ercc3	BTF2 p89|Ercc-3|XPB	excision repair cross-complementing rodent repair deficiency, complementation group 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-4935311-4	chr5	4935194	4935394	+	978.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011074, intron 11 of 14)	intron (NM_011074, intron 11 of 14)	-177078.0	NM_021457	14362.0	Mm.246003	NM_021457	ENSMUSG00000044674	Fzd1	AW227548|FZ-1|Fz1	frizzled class receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-9748050-3	chr15	9747940	9748140	+	670.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305042, intron 1 of 36)	intron (NM_001305042, intron 1 of 36)	828.0	NM_177123	320277.0	Mm.127822	NM_177123	ENSMUSG00000072663	Spef2	C230086A09Rik	sperm flagellar 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-144682506-2	chr3	144682406	144682606	+	848.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37829.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-88459038-4	chr13	88458949	88459149	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-362423.0	NM_010103	13612.0	Mm.125580	NM_010103	ENSMUSG00000034488	Edil3	Del-1|Del1|Sox2-cre|Sox2Cre|Tg(Sox2-cre)1Amc	EGF-like repeats and discoidin I-like domains 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6827068-4	chr19	6826972	6827172	+	871.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	2872.0	NR_039555	100628576.0		NR_039555	ENSMUSG00000104884	Mir5046	mmu-mir-5046|mu-mir-5046	microRNA 5046	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-145004598-2	chr3	145004498	145004698	+	611.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_017474)	TTS (NM_017474)	28178.0	NM_017474	23844.0	Mm.33483	NM_017474	ENSMUSG00000028255	Clca1	Clca2|Clca3|gob-5|gob5	chloride channel accessory 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-65783393-2	chr17	65783292	65783492	+	692.5	f0_balb.idr|f0_c57.idr	promoter-TSS (NR_104465)	promoter-TSS (NR_104465)	37.0	NR_104465	70351.0	Mm.48686	NM_146081	ENSMUSG00000061950	Ppp4r1	3110001J10Rik|Pp4r1	protein phosphatase 4, regulatory subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-115881998-2	chr13	115881898	115882098	+	672.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	427690.0	NM_021459	16392.0	Mm.42242	NM_021459	ENSMUSG00000042258	Isl1	-	ISL1 transcription factor, LIM/homeodomain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-57571094-2	chr18	57570994	57571194	+	789.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029290, intron 3 of 6)	intron (NM_029290, intron 3 of 6)	-18697.0	NR_015494	75084.0	Mm.243841	NR_015494	ENSMUSG00000086607	4930511M06Rik	-	RIKEN cDNA 4930511M06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-102816357-2	chr2	102816257	102816457	+	587.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039150, intron 13 of 13)	intron (NM_001039150, intron 13 of 13)	-69597.0	NR_153853	102637542.0	Mm.371582	NR_153852		Gm13872	-	predicted gene 13872	ncRNA	2.69412273136051	2.29813060553662	1.70138911185862	1.64990732671493	1.22932235467334	1.0925011854435	1.06507908493389	2.33890836573122	-1.52481426758444	0.184333288930895	0.659825155101641
Merged-chr13-100866307-7	chr13	100866148	100866348	+	893.857117	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32821.0	NM_022885	69048.0	Mm.402215	NM_022885	ENSMUSG00000021629	Slc30a5	1810010K08Rik|AF233321|ZNT5|ZTL1|ZnT-5|Zntl1	solute carrier family 30 (zinc transporter), member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-115184908-1	chr10	115184808	115185008	+	565.0	f0_balb.idr	5' UTR (NM_173391, exon 1 of 11)	5' UTR (NM_173391, exon 1 of 11)	114.0	NM_173391	216343.0	Mm.31597	NM_173391	ENSMUSG00000006764	Tph2	AU043594|Ntph	tryptophan hydroxylase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-30136454-3	chr13	30136367	30136567	+	892.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153546)	promoter-TSS (NM_153546)	-23.0	NM_153546	218121.0	Mm.89682	NM_153546	ENSMUSG00000038732	Mboat1	9130215M02Rik|BC023845|LPEAT1|Moact1|Oact1	membrane bound O-acyltransferase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-72335419-1	chr13	72335319	72335519	+	547.0	f1_c57bl6.idr	Intergenic	Intergenic	293145.0	NR_030701	328287.0	Mm.235072	NR_030701		Gm20554	D430050G20	predicted gene, 20554	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-157447653-4	chr2	157447563	157447763	+	946.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025395, intron 2 of 13)	intron (NM_001025395, intron 2 of 13)	23370.0	NM_001025395	20779.0	Mm.22845	NM_009271	ENSMUSG00000027646	Src	AW259666|pp60c-src	Rous sarcoma oncogene	protein-coding	2.0176325665735	2.6034646416766	1.90892655019622	1.49180211113393	2.81234589594533	1.31578376631595	2.32824711659492	2.25468714893465	0.523465252761551	0.593249911205151	0.9706660979479
Merged-chr17-24453912-1	chr17	24453812	24454012	+	613.0	f1_balb.idr	intron (NR_125990, intron 1 of 13)	URR1A|DNA|hAT-Charlie	1480.0	NM_001301784	13560.0	Mm.163132	NM_007893	ENSMUSG00000024137	E4f1	p120E4F|phi-AP3	E4F transcription factor 1	protein-coding	0.780699579684246	1.92477221592169	0.827744777919558	1.88553089141362	1.00241901457729	0.854090241949886	1.46676254355813	2.36132265290562	0.293011589587954	0.831959319665476	0.998431161219273
Merged-chr15-50762878-4	chr15	50762788	50762988	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310481, intron 4 of 5)	intron (NM_001310481, intron 4 of 5)	126161.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	0.192651255212533	0.214567579009896	0.207428834482487	0.762893987346556	1.09701796384393	0.423885648431263	0.209006636849128	0.528474865778156	1.46681519372161	0.453547329286174	1
Merged-chr5-53214066-2	chr5	53213966	53214166	+	684.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172710)	promoter-TSS (NM_172710)	-614.0	NM_172710	231238.0	Mm.235020	NM_172710	ENSMUSG00000029189	Sel1l3	2310045A20Rik|AI429585|mKIAA0746	sel-1 suppressor of lin-12-like 3 (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-121272685-4	chr6	121272585	121272785	+	979.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26779.0	NM_011909	24110.0	Mm.326911	NM_011909	ENSMUSG00000030107	Usp18	1110058H21Rik|AW047653|UBP43|Ubp15	ubiquitin specific peptidase 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-164822439-2	chr2	164822339	164822539	+	580.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028028)	promoter-TSS (NM_028028)	-247.0	NM_028028	71971.0	Mm.161149	NM_028028	ENSMUSG00000017764	Zswim1	2410003H12Rik|AI850991|BB046916	zinc finger SWIM-type containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-13026571-2	chr15	13026471	13026671	+	544.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	147104.0	NM_007666	12563.0	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-154675492-2	chr2	154675392	154675592	+	849.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_029362, intron 1 of 4)	intron (NM_029362, intron 1 of 4)	18466.0	NM_029362	75608.0	Mm.262480	NM_029362	ENSMUSG00000038467	Chmp4b	2010012F05Rik|C76846|Snf7-2	charged multivesicular body protein 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-121336781-4	chr6	121336678	121336878	+	796.612488	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144512, intron 13 of 14)	intron (NM_144512, intron 13 of 14)	-6298.0	NM_001347433	14411.0	Mm.274506	NM_133661	ENSMUSG00000030109	Slc6a12	BGT1|GAT-2|GAT2|Gabt2	solute carrier family 6 (neurotransmitter transporter, betaine/GABA), member 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-181593564-2	chr2	181593464	181593664	+	658.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1103.0	NM_001164597	269401.0	Mm.386888	NM_001164597	ENSMUSG00000000823	Zfp512b	Gm632|Znf512b	zinc finger protein 512B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-11013556-2	chr8	11013456	11013656	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_046017, intron 1 of 4)	intron (NR_046017, intron 1 of 4)	-5126.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114906878-4	chr11	114906789	114906989	+	973.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	16848.0	NM_170758	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-87805943-4	chr10	87805854	87806054	+	993.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52311.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	2.27705627326363	2.55159721207991	2.11957182677376	2.18610084665797	1.51937855499741	1.87496654488099	2.48545523436731	2.50233188759751	-0.298055150577556	0.738054783846464	0.998431161219273
Merged-chr12-79629110-2	chr12	79629010	79629210	+	576.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	295623.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80533806-2	chr10	80533706	80533906	+	712.799988	f1_balb.idr|f1_c57bl6.idr	intron (NM_026094, intron 6 of 27)	MTD|LTR|ERVL-MaLR	5318.0	NM_026094	67331.0	Mm.52511	NM_026094	ENSMUSG00000003341	Atp8b3	1700042F02Rik|1700056N23Rik|ATPIK|SAPLT	ATPase, class I, type 8B, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-86881411-4	chr8	86881303	86881503	+	988.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030563, intron 1 of 6)	intron (NM_030563, intron 1 of 6)	3855.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	2.44445510009358	3.44256470955669	3.68884954226735	2.84360579749878	3.31036911079017	4.07001031073718	3.06711611727265	1.85808113387899	0.167009348987551	0.815540329786004	0.998431161219273
Merged-chr5-15934885-2	chr5	15934785	15934985	+	625.5	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001110844, exon 1 of 39)	5' UTR (NM_001110844, exon 1 of 39)	194.0	NM_001110844	12293.0	Mm.159842	NM_009784	ENSMUSG00000040118	Cacna2d1	Ca(v)alpha2delta1|Cacna2|Cchl2a	calcium channel, voltage-dependent, alpha2/delta subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165856879-2	chr2	165856779	165856979	+	955.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252587, intron 2 of 11)	intron (NM_001252587, intron 2 of 11)	1294.0	NM_001252585	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-105054998-1	chr13	105054898	105055098	+	594.0	f0_balb.idr	promoter-TSS (NM_029879)	promoter-TSS (NM_029879)	-68.0	NM_029879	52882.0	Mm.100348	NM_029879	ENSMUSG00000021719	Rgs7bp	A930030I01Rik|AI842293|D13Bwg1146e|R7bp	regulator of G-protein signalling 7 binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-49858692-4	chr16	49858599	49858799	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010581, intron 1 of 9)	intron (NM_010581, intron 1 of 9)	3045.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-44581450-4	chr11	44581365	44581565	+	908.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4852.0	NR_126460	75389.0	Mm.261421	NR_126460	ENSMUSG00000086501	4930597A21Rik	-	RIKEN cDNA 4930597A21 gene	ncRNA	3.06634374308945	1.8430122219089	3.55405488449228	3.02687700694828	4.53493075696118	4.61559292132995	4.79801619414577	4.6680544988486	2.29335294681138	5.31282945474678e-06	0.000267829108395176
Merged-chr2-129297287-4	chr2	129297166	129297366	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040371)	promoter-TSS (NR_040371)	-54.0	NM_181589	70466.0	Mm.45785	NM_181589	ENSMUSG00000048327	Ckap2l	2010016H04Rik|2610318C08Rik|AV070319|radmis|rdm	cytoskeleton associated protein 2-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32981583-3	chr2	32981507	32981707	+	889.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151460, intron 2 of 8)	CpG-8008	476.0	NR_151461	56017.0	Mm.305754	NM_019488	ENSMUSG00000026791	Slc2a8	D2Ertd44e|GLUT8|GlutX1	solute carrier family 2, (facilitated glucose transporter), member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-115544638-4	chr6	115544506	115544706	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199033)	promoter-TSS (NM_199033)	-98.0	NM_199033	381802.0	Mm.291208	NM_199033	ENSMUSG00000042389	Tsen2	AU067695	tRNA splicing endonuclease subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-64618850-3	chr8	64618739	64618939	+	596.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013494, intron 2 of 8)	intron (NM_013494, intron 2 of 8)	74270.0	NM_013494	12876.0	Mm.31395	NM_013494	ENSMUSG00000037852	Cpe	CPH|Cph-1|Cph1|NF-alpha1|R74677|fat	carboxypeptidase E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-174018185-4	chr2	174018079	174018279	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58872.0	NM_172675	228960.0	Mm.277977	NM_172675	ENSMUSG00000027522	Stx16	4930401D03|5430410K23Rik|6330500A18Rik|AI648908|AW553605|Syn16	syntaxin 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-30521920-4	chr16	30521815	30522015	+	965.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357415, intron 10 of 11)	intron (NM_001357415, intron 10 of 11)	28663.0	NM_172614	224090.0	Mm.241459	NM_172614	ENSMUSG00000022537	Tmem44	1700007N03Rik|9330161C17Rik|B230220N21	transmembrane protein 44	protein-coding	3.35503609614277	4.03137947161083	4.48170822935761	4.36623487518664	3.46849279207962	4.74506644157412	4.60433732277112	3.87846175725025	0.189235806097309	0.696219651562834	0.997923870727665
Merged-chr13-31811977-2	chr13	31811877	31812077	+	865.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	5331.0	NM_008592	17300.0	Mm.12949	NM_008592	ENSMUSG00000050295	Foxc1	FREAC3|Fkh1|Mf1|Mf4|ch|fkh-1|frkhda	forkhead box C1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-20774055-4	chr10	20773918	20774118	+	913.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-48940.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36522254-4	chr18	36522144	36522344	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5908.0	NM_172830	240215.0	Mm.135463	NM_172830	ENSMUSG00000024485	Slc4a9	AE4|D630003B07|D630024F24Rik	solute carrier family 4, sodium bicarbonate cotransporter, member 9	protein-coding	3.03126075021146	4.69259988257233	3.41590620101302	4.055384262071	4.09079544293953	3.92806558656924	3.87486636062899	4.23327039346628	0.134154230104835	0.792655520071876	0.998431161219273
Merged-chr15-100447127-2	chr15	100447023	100447223	+	815.916687	f0_balb.idr|f1_balb.idr	Intergenic	PB1D10|SINE|Alu	-21888.0	NM_001357983	68614.0	Mm.275272	NM_134093	ENSMUSG00000037353	Letmd1	1110019O13Rik|AI593524|BB130465|BB235638|HCCR-2|HCCR1|MCC-32|Mccr	LETM1 domain containing 1	protein-coding	2.50831060417999	2.54319462604239	1.55704294161605	2.6550661553187	3.57925607553818	3.30001024726491	3.91201499368847	3.25424963173807	2.03397678324687	0.00291915207659277	0.0446734523150001
Merged-chr5-92488359-4	chr5	92488259	92488459	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007644, intron 1 of 11)	intron (NM_007644, intron 1 of 11)	17298.0	NM_007644	12492.0	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-54537453-2	chr8	54537353	54537553	+	641.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-7455.0	NM_029701	76687.0	Mm.86437	NM_029701	ENSMUSG00000054408	Spcs3	1810011E08Rik|SPC22/23	signal peptidase complex subunit 3 homolog (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-135705687-3	chr1	135705588	135705788	+	861.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14375.0	NM_001360782	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36750103-2	chr18	36750003	36750203	+	800.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_011879, intron 8 of 19)	intron (NM_011879, intron 8 of 19)	5447.0	NM_011879	24010.0	Mm.30234	NM_011879	ENSMUSG00000024474	Ik	MuRED	IK cytokine	protein-coding	1.4757938038542	3.08131310383602	0.908117615408473	1.38649026125459	1.31249452357557	2.77442858994243	0.91564653475462	1.39530125951663	-0.432905233772937	0.719381238824729	0.998431161219273
Merged-chr11-106623825-4	chr11	106623737	106623937	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1H|LTR|ERVL-MaLR	-10907.0	NM_198292	21763.0	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-11139571-2	chr16	11139471	11139671	+	541.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_027502, intron 21 of 22)	intron (NR_027502, intron 21 of 22)	-5039.0	NM_029582	106200.0	Mm.291015	NM_029582	ENSMUSG00000022498	Txndc11	2810408E11Rik|AI427833|EFP1|Txdc11	thioredoxin domain containing 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-81849409-4	chr7	81849305	81849505	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9596.0	NR_111910	107769.0	Mm.221412	NM_145375	ENSMUSG00000038623	Tm6sf1	AI428514|BC023123|C630016D09Rik	transmembrane 6 superfamily member 1	protein-coding	5.1277243868869	4.93762919594152	4.11700512122394	5.4336833680727	5.21398449272343	4.61752321583843	4.47042688137922	5.1872302805765	-0.0819689346257331	0.826786377731074	0.998431161219273
Merged-chr11-120631351-4	chr11	120631266	120631466	+	975.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010756, intron 1 of 2)	intron (NM_010756, intron 1 of 2)	2181.0	NM_010756	17134.0	Mm.268010	NM_010756	ENSMUSG00000051510	Mafg	AA545192|C630022N07Rik	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein G (avian)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-50225155-4	chr16	50225049	50225249	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001347240, exon 12 of 17)	exon (NM_001347240, exon 12 of 17)	-152297.0	NR_045935	224180.0	Mm.146439	NM_175010		Gm4827	B130050K08|EG224180	predicted gene 4827	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16891111-2	chr7	16891011	16891211	+	943.833374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010320)	promoter-TSS (NM_010320)	-675.0	NM_010320	14709.0	Mm.103770	NM_010320	ENSMUSG00000063594	Gng8	G(y)8	guanine nucleotide binding protein (G protein), gamma 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-29514605-4	chr17	29514492	29514692	+	846.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23547.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-125119285-2	chr4	125119185	125119385	+	760.583313	f1_balb.idr|f1_c57bl6.idr	exon (NM_153159, exon 6 of 6)	exon (NM_153159, exon 6 of 6)	8596.0	NM_153159	230738.0	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6281620-3	chr19	6281559	6281759	+	871.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010119, intron 2 of 4)	intron (NM_010119, intron 2 of 4)	4763.0	NM_010119	13660.0	Mm.30169	NM_010119	ENSMUSG00000024772	Ehd1	AA409636|Past1|RME-1	EH-domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-51408970-4	chr3	51408892	51409092	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025523)	promoter-TSS (NM_025523)	-37.0	NM_025523	66377.0	Mm.331007	NM_025523	ENSMUSG00000037152	Ndufc1	2310016K22Rik|KFYI	NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-46927029-4	chr13	46926909	46927109	+	835.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010617, intron 2 of 37)	intron (NM_010617, intron 2 of 37)	2709.0	NM_010617	16553.0	Mm.342703	NM_010617	ENSMUSG00000021375	Kif13a	4930505I07Rik|mKIAA4109	kinesin family member 13A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-17643524-1	chr6	17643424	17643624	+	710.0	f1_c57bl6.idr	intron (NM_007604, intron 1 of 9)	intron (NM_007604, intron 1 of 9)	6514.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	1.01887341147478	0.601969362265771	1.47856206380957	1.32359556651247	0.565397158827424	0.604766922595113	1.58907227927269	0.581303977932722	-0.84556748392789	0.607604779709018	0.974576632476413
Merged-chr1-171171319-3	chr1	171171177	171171377	+	863.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15759.0	NM_001315500	17528.0	Mm.9986	NM_008623	ENSMUSG00000056569	Mpz	Mpp|P-zero|P0	myelin protein zero	protein-coding	3.00921405373198	2.8519839268543	2.49992656991871	1.68519211391582	0.95965729333745	1.07379701845053	1.32846803610301	1.28325810369528	-4.40816564023137	0.000529348426691016	0.0116731308926822
Merged-chr4-139587535-4	chr4	139587437	139587637	+	935.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205173, intron 1 of 8)	intron (NM_001205173, intron 1 of 8)	12817.0	NM_001205173	212632.0	Mm.30464	NM_183148	ENSMUSG00000041025	Iffo2	C79267	intermediate filament family orphan 2	protein-coding	4.47074486340568	3.22559299230227	3.45880305893439	3.43264124821087	2.77959735582581	2.40437354198216	1.56304864587339	2.6971155809908	-2.1722077700245	0.00173514090540901	0.0301131445271416
Merged-chr11-44441430-3	chr11	44441335	44441535	+	842.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29113.0	NM_024475	79560.0	Mm.338784	NM_024475	ENSMUSG00000041231	Ublcp1	4930527B16Rik|8430435I17Rik|BC002236	ubiquitin-like domain containing CTD phosphatase 1	protein-coding	2.47022297410795	3.38701032183212	3.26775118924454	3.49496074917545	0.985636009727267	1.14743429208154	1.09881937622476	1.05448565829509	-6.41868978412193	1.25055790852668e-07	1.0566333652467e-05
Merged-chr19-37059796-3	chr19	37059667	37059867	+	810.266663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198300, intron 8 of 10)	intron (NM_198300, intron 8 of 10)	-114076.0	NR_045329	319931.0	Mm.446730	NR_045329	ENSMUSG00000097591	A330032B11Rik	-	RIKEN cDNA A330032B11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-120620386-2	chr5	120620286	120620486	+	595.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028041, intron 8 of 19)	intron (NM_028041, intron 8 of 19)	7256.0	NM_028041	71990.0	Mm.24495	NM_028041	ENSMUSG00000029599	Ddx54	2410015A15Rik|AI414901|DP97	DEAD (Asp-Glu-Ala-Asp) box polypeptide 54	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-66392718-4	chr7	66392636	66392836	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_053080, exon 13 of 13)	exon (NM_053080, exon 13 of 13)	-4395.0	NM_146191	233328.0	Mm.33284	NM_146191	ENSMUSG00000015133	Lrrk1	AW319595|C230002E15Rik|D130026O16Rik|mKIAA1790	leucine-rich repeat kinase 1	protein-coding	0.247306047506251	0.274175513247872	0.265477654391667	0.857398437972571	0.249012274101458	0.276122922340807	1.12597782189228	1.06785290411234	1.68083484906953	0.401399208780189	1
Merged-chr8-82917191-3	chr8	82917311	82917511	+	738.266663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177378, intron 1 of 6)	intron (NM_177378, intron 1 of 6)	54055.0	NM_177378	330812.0	Mm.491438	NM_177378	ENSMUSG00000047747	Rnf150	A630007N06Rik|C030044C12Rik|Greul5|mKIAA1214	ring finger protein 150	protein-coding	0.786790888151211	0.833056367627428	1.48903465447455	0.806574727650706	1.73427329836199	1.68514864586506	1.5023928175747	1.3239120428955	2.27757135130325	0.105612734089087	0.507087246439307
Merged-chr19-31968137-2	chr19	31968037	31968237	+	549.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	99376.0	NM_001081074	69865.0	Mm.87538	NM_001081074	ENSMUSG00000052595	A1cf	1810073H04Rik|ACF64|ACF65|ASP|Acf|MCM|MerCreMer|Tg(Myh6-cre/Esr1*)1Jmk|mer	APOBEC1 complementation factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-84934139-2	chr2	84934039	84934239	+	550.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2507.0	NM_021398	58207.0	Mm.290729	NM_021398	ENSMUSG00000027074	Slc43a3	Eeg1|SEEEG-1	solute carrier family 43, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-149726083-2	chr4	149725983	149726183	+	625.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177672, exon 6 of 6)	3' UTR (NM_177672, exon 6 of 6)	11687.0	NM_001284273	230917.0	Mm.266704	NM_177672	ENSMUSG00000044700	Tmem201	AV028368|D4Ertd429e|Net5|Samp1	transmembrane protein 201	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-136286034-4	chr4	136285965	136286165	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009557)	promoter-TSS (NM_009557)	-2.0	NM_009557	22704.0	Mm.1504	NM_009557	ENSMUSG00000051351	Zfp46	AI426962|Mlz-4|Zfp-46|Znf436	zinc finger protein 46	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122652667-3	chr5	122652565	122652765	+	931.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001284402, intron 1 of 12)	intron (NM_001284402, intron 1 of 12)	2241.0	NM_001284402	18439.0	Mm.42026	NM_011027	ENSMUSG00000029468	P2rx7	AI467586|P2X(7)|P2X7R	purinergic receptor P2X, ligand-gated ion channel, 7	protein-coding	0.791883215857248	0.737329901849438	0.518087964431992	0.510666756513357	0.661885038995537	1.06833025466936	1.44126431774777	0.980008030094104	2.39575931153668	0.132431558038528	1
Merged-chr2-104128427-2	chr2	104128307	104128507	+	659.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A1|LTR|ERVL-MaLR	5638.0	NM_026634	68243.0	Mm.158191	NM_026634	ENSMUSG00000032671	A930018P22Rik	-	RIKEN cDNA A930018P22 gene	protein-coding	-1.8418762459921	-1.8125357239735	-1.82140854000656	-1.82869693527674	-1.56059678980999	-1.8106129477253	-1.81939992894326	-1.82739231600805	1.3620893379502	0.699511506488145	1
Merged-chr18-23871675-2	chr18	23871575	23871775	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162941, intron 5 of 7)	intron (NM_001162941, intron 5 of 7)	67705.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-15759260-2	chr13	15759172	15759372	+	700.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43358.0	NR_045507	71071.0	Mm.380845	NR_045507	ENSMUSG00000113960	4933412O06Rik	-	RIKEN cDNA 4933412O06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-127278235-4	chr1	127278147	127278347	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145128, intron 2 of 17)	intron (NM_145128, intron 2 of 17)	73261.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-66831580-3	chr10	66831450	66831650	+	756.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	88834.0	NR_138560	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-64096232-4	chr15	64096130	64096330	+	985.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 26 of 28)	MIR|SINE|MIR	-35782.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-134946170-3	chr4	134946069	134946269	+	869.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER5A|DNA|hAT-Charlie	15189.0	NM_026780	68592.0	Mm.29989	NM_026780	ENSMUSG00000028821	Syf2	1110018L13Rik|Cbpin|D4Bwg1551e|Gcipip|Ntc31|mp29|p29	SYF2 homolog, RNA splicing factor (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-67125697-3	chr11	67125592	67125792	+	886.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5612.0	NR_038055	74184.0	Mm.162554	NR_038055	ENSMUSG00000087410	2310065F04Rik	linc-Myh	RIKEN cDNA 2310065F04 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-67481388-2	chr8	67481288	67481488	+	662.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-9370.0	NM_008673	17960.0	Mm.14125	NM_008673	ENSMUSG00000025588	Nat1	Nat-1	N-acetyl transferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35922631-2	chr17	35922531	35922731	+	751.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357740, intron 1 of 18)	intron (NM_001357740, intron 1 of 18)	3359.0	NM_001357740	52040.0	Mm.29385	NM_175934	ENSMUSG00000039220	Ppp1r10	2610025H06Rik|Cat53|D17Ertd808e|Fb19|Pnuts	protein phosphatase 1, regulatory subunit 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-121491076-4	chr3	121490965	121491165	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145394, intron 10 of 14)	intron (NM_145394, intron 10 of 14)	41279.0	NM_145394	213603.0	Mm.33062	NM_145394	ENSMUSG00000039865	Slc44a3	BC010552	solute carrier family 44, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90458835-2	chr2	90458735	90458935	+	791.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 9 of 23)	intron (NM_008982, intron 9 of 23)	20339.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-20412146-4	chr16	20412055	20412255	+	870.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176839, intron 2 of 6)	intron (NM_176839, intron 2 of 6)	14239.0	NM_013790	27416.0	Mm.20845	NM_013790	ENSMUSG00000022822	Abcc5	2900011L11Rik|AI132311|Abcc5a|Abcc5b|Mrp5	ATP-binding cassette, sub-family C (CFTR/MRP), member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-79139803-3	chr15	79139704	79139904	+	891.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138581, intron 2 of 6)	B2_Mm2|SINE|B2	1447.0	NM_001310581	27660.0	Mm.390827	NM_138581	ENSMUSG00000033029	1700088E04Rik	ESTJ0827E04	RIKEN cDNA 1700088E04 gene	protein-coding	1.91740393706748	2.16458643661231	2.57838309861469	2.13947137109023	1.12048968427474	2.51597539601736	1.18368753635035	1.76406681599546	-1.08910934819117	0.310269532334093	0.811052774796438
Merged-chr3-105078171-3	chr3	105078106	105078306	+	690.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029228, intron 4 of 4)	intron (NM_029228, intron 4 of 4)	11362.0	NM_029228	75269.0	Mm.307994	NM_029228	ENSMUSG00000051788	4930564D02Rik	-	RIKEN cDNA 4930564D02 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-34398874-1	chr15	34398774	34398974	+	792.0	f0_balb.idr	intron (NM_001358780, intron 6 of 18)	intron (NM_001358780, intron 6 of 18)	-41002.0	NM_001256161	77358.0	Mm.402759	NM_001256161	ENSMUSG00000094447	9430069I07Rik	-	RIKEN cDNA 9430069I07 gene	protein-coding	0.875315479836911	0.978712359955637	0.946736120483211	0.920876063846181	2.62859081162926	1.90946410010412	2.80697185717231	2.42428644703681	5.85948635985442	8.37484346382661e-06	0.000396436361166609
Merged-chr18-65440393-2	chr18	65440293	65440493	+	723.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172833, intron 2 of 15)	B1F|SINE|Alu	9396.0	NM_172833	240354.0	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-47014774-4	chr7	47014699	47014899	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6385.0	NM_175318	101685.0	Mm.155687	NM_175318	ENSMUSG00000049516	Spty2d1	5830435K17Rik|AI852426|P16H6	SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-73944945-4	chr17	73944846	73945046	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011723, intron 1 of 35)	intron (NM_011723, intron 1 of 35)	5250.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-55486226-2	chr13	55486126	55486326	+	695.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177371, intron 1 of 14)	intron (NM_001177371, intron 1 of 14)	1850.0	NM_001177371	56320.0	Mm.19016	NM_019813	ENSMUSG00000034675	Dbn1	-	drebrin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76817087-4	chr15	76816984	76817184	+	900.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198420, intron 1 of 10)	intron (NM_198420, intron 1 of 10)	1086.0	NM_001168288	223666.0	Mm.322931	NM_198420	ENSMUSG00000033697	Arhgap39	9530053N22|AI843066|D15Wsu169e|Kiaa1688|Porf-2	Rho GTPase activating protein 39	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59314935-4	chr15	59314820	59315020	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009270)	promoter-TSS (NM_009270)	-172.0	NM_009270	20775.0	Mm.296169	NM_009270	ENSMUSG00000022351	Sqle	AI323792	squalene epoxidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-135689148-4	chr3	135689022	135689222	+	867.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008689, intron 1 of 24)	intron (NM_008689, intron 1 of 24)	2425.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-26445152-2	chr4	26444972	26445172	+	1000.0	f0_balb.idr|f1_balb.idr	Intergenic	Lx2B|LINE|L1	-98420.0	NM_172865	242362.0	Mm.245602	NM_172865	ENSMUSG00000040520	Manea	4932703L02Rik	mannosidase, endo-alpha	protein-coding	2.78614378386518	2.38992597715706	2.59968004514222	2.12617973625196	2.0325410033768	1.9874620316021	1.28371530926027	1.4970714247974	-1.92142213112676	0.0423744830278656	0.294786846174139
Merged-chr15-98776500-3	chr15	98776415	98776615	+	921.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011718, intron 3 of 4)	CpG	1635.0	NM_011718	22410.0	Mm.4709	NM_011718	ENSMUSG00000022996	Wnt10b	Wnt12	wingless-type MMTV integration site family, member 10B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-104432438-2	chr11	104432338	104432538	+	584.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359634, intron 2 of 14)	intron (NM_001359634, intron 2 of 14)	9853.0	NM_001081045	76719.0	Mm.136418	NM_001081045	ENSMUSG00000018412	Kansl1	1700081L11Rik|9430041J06Rik|mKIAA1267	KAT8 regulatory NSL complex subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-12207415-2	chr15	12207311	12207511	+	578.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356498, intron 1 of 15)	ID4_|SINE|ID	2383.0	NM_172958	268783.0	Mm.54460	NM_172958	ENSMUSG00000039458	Mtmr12	3Pap|4932703C11|C730015A02Rik|Pip3ap|mKIAA1682	myotubularin related protein 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-27213097-3	chr15	27212998	27213198	+	757.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-253579.0	NM_020332	11732.0	Mm.265264	NM_020332	ENSMUSG00000022265	Ank	Ankh|D15Ertd221e|ank|mKIAA1581	progressive ankylosis	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-34738487-1	chr7	34738387	34738587	+	844.0	f1_c57bl6.idr	intron (NM_175140, intron 2 of 3)	intron (NM_175140, intron 2 of 3)	74224.0	NM_175140	68947.0	Mm.29380	NM_175140	ENSMUSG00000060402	Chst8	1500011J21Rik|AI426009	carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-102506612-3	chr15	102506514	102506714	+	802.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009582, intron 1 of 13)	B1F|SINE|Alu	4086.0	NM_001358844	26404.0	Mm.172897	NM_009582	ENSMUSG00000023050	Map3k12	DLK|MUK|Zpk	mitogen-activated protein kinase kinase kinase 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-37375803-2	chr19	37375703	37375903	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010615)	promoter-TSS (NM_010615)	-600.0	NM_010615	16551.0	Mm.42203	NM_010615	ENSMUSG00000012443	Kif11	Eg5|Kif8|Kifl1|Knsl1	kinesin family member 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-103164737-4	chr12	103164642	103164842	+	911.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081017, intron 42 of 48)	intron (NM_001081017, intron 42 of 48)	77404.0	NM_133364	170952.0	Mm.217019	NM_133364	ENSMUSG00000041669	Prima1	B230212M13Rik|BB120497|PRiMA	proline rich membrane anchor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-116587237-2	chr8	116587137	116587337	+	707.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029441, intron 4 of 6)	MLT1C|LTR|ERVL-MaLR	82222.0	NM_029297	75465.0	Mm.23114	NM_029297	ENSMUSG00000034467	Dynlrb2	1700009A04Rik|DNLC2B|Dncl2b	dynein light chain roadblock-type 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-8838630-2	chr19	8838530	8838730	+	860.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008144)	promoter-TSS (NM_008144)	616.0	NM_010316	14704.0	Mm.329700	NM_010316	ENSMUSG00000071658	Gng3	-	guanine nucleotide binding protein (G protein), gamma 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-51022675-4	chr2	51022576	51022776	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	112992.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166875094-4	chr2	166874971	166875171	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085495, intron 30 of 38)	intron (NM_001085495, intron 30 of 38)	-31025.0	NM_023565	110750.0	Mm.22417	NM_023565	ENSMUSG00000002718	Cse1l	2610100P18Rik|AA407533|Capts|Cas|Xpo2	chromosome segregation 1-like (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115007206-4	chr5	115007117	115007317	+	880.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4307.0	NM_029012	74585.0	Mm.355894	NM_029012	ENSMUSG00000029550	Sppl3	4833416I09Rik|Psl4|Usmg3	signal peptide peptidase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-23273902-4	chr19	23273781	23273981	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153808)	promoter-TSS (NM_153808)	16.0	NM_153808	226026.0	Mm.23267	NM_153808	ENSMUSG00000024943	Smc5	MLZ-453|SMC-5|Smc5l1|mKIAA0594|mSMC5	structural maintenance of chromosomes 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-161877748-2	chr1	161877637	161877837	+	978.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1055.0	NM_001357402	226551.0	Mm.170002	NM_172645	ENSMUSG00000040297	Suco	4732491B11|AI848100|AU016931|Opt	SUN domain containing ossification factor	protein-coding	1.88479209860592	2.24675988885962	2.79848418444359	1.68128463294097	1.76742800219881	1.57986507507746	2.40888697539969	2.11983344670426	-0.541438338511205	0.564762372095787	0.960864852581573
Merged-chr13-34239646-1	chr13	34239546	34239746	+	542.0	f1_c57bl6.idr	intron (NM_001033167, intron 3 of 10)	intron (NM_001033167, intron 3 of 10)	76682.0	NM_001110515	69666.0	Mm.24788	NM_001101430	ENSMUSG00000071451	Psmg4	PAC-4|mPAC4	proteasome (prosome, macropain) assembly chaperone 4	protein-coding	1.13189800633428	0.933550198414082	0.667356652156238	0.654576447041604	1.00128322815643	1.46726679290676	0.907674117368434	2.17461864583709	2.5212419598894	0.076140309652364	0.418588421311453
Merged-chr6-97179593-3	chr6	97179505	97179705	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081111)	promoter-TSS (NM_001081111)	-481.0	NM_001081111	232286.0	Mm.30893	NM_001081111	ENSMUSG00000030059	Tmf1	7030402D04Rik|Gm153|Tmf1`	TATA element modulatory factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-97361177-4	chr15	97361086	97361286	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172293, intron 3 of 5)	intron (NM_172293, intron 3 of 5)	-113899.0	NM_001164602	105827.0	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-8326004-2	chr12	8325904	8326104	+	664.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021429, intron 4 of 6)	intron (NM_021429, intron 4 of 6)	12571.0	NM_021429	58240.0	Mm.309954	NM_021429	ENSMUSG00000020605	Hs1bp3	-	HCLS1 binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-4592620-2	chr2	4592520	4592720	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177844, intron 5 of 11)	intron (NM_001177844, intron 5 of 11)	32866.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-59381241-3	chr4	59381152	59381352	+	817.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163288, intron 6 of 16)	intron (NM_001163288, intron 6 of 16)	57381.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	1.78470886564523	0.757913255568756	0.740829530459784	1.12750647734448	1.5515535075609	2.07534838384665	0.744639176068187	0.951519476623221	0.848321642187932	0.556090089291212	0.960313897742752
Merged-chr4-150078104-2	chr4	150078004	150078204	+	639.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-9399.0	NM_177366	269604.0	Mm.219307	NM_177366	ENSMUSG00000047875	Gpr157	F730108M23Rik	G protein-coupled receptor 157	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-25862990-2	chr15	25862890	25863090	+	806.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001034851, intron 1 of 8)	HAL1|LINE|L1	19692.0	NM_001034851	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-151595747-2	chr1	151595647	151595847	+	896.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_022018, intron 1 of 13)	MLT1A1|LTR|ERVL-MaLR	24374.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-53942125-2	chr19	53942025	53942225	+	863.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001195348, intron 2 of 3)	intron (NM_001195348, intron 2 of 3)	-2181.0	NM_001168505	56392.0	Mm.228669	NM_019658	ENSMUSG00000024976	Shoc2	AU017287|Sur8|mKIAA0862	soc-2 (suppressor of clear) homolog (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55793604-4	chr14	55793498	55793698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4741.0	NM_001164108	56532.0	Mm.46612	NM_019955	ENSMUSG00000022221	Ripk3	2610528K09Rik|AW107945|Rip3	receptor-interacting serine-threonine kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4417390-2	chr19	4417290	4417490	+	818.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20313.0	NM_001001984	225876.0	Mm.31941	NM_001001984	ENSMUSG00000054611	Kdm2a	100043628|5530401A10Rik|AA589516|AW536790|Cxxc8|Fbl11|Fbl7|Fbxl11|Gm4560|Jhdm1|Jhdm1a|lalina	lysine (K)-specific demethylase 2A	protein-coding	2.75516817486692	1.2669807391272	2.99271837650345	2.24635686086491	2.50652952282667	1.27452480309276	1.5090855204679	2.13873521934967	-1.12777063083209	0.277359709069408	0.781366007374687
Merged-chr18-50058711-4	chr18	50058613	50058813	+	996.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134131, intron 1 of 1)	intron (NM_134131, intron 1 of 1)	-5051.0	NR_155293	102635912.0	Mm.440627	NR_155293		C030005K06Rik	-	RIKEN cDNA C030005K06 gene	ncRNA	5.01529329596055	5.19197385413342	3.96494676860391	5.0147324405923	4.11174911256701	4.6406194906367	3.19241612621893	4.41667278956273	-0.862160921975098	0.0498392299763593	0.325455958593809
Merged-chr7-34984627-2	chr7	34984529	34984729	+	766.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_008820, intron 9 of 14)	intron (NM_008820, intron 9 of 14)	71937.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-115995107-4	chr6	115995049	115995249	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026376)	promoter-TSS (NM_026376)	-144.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72091105-2	chr6	72091009	72091209	+	572.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6499.0	NM_001035228	20454.0	Mm.38248	NM_011375	ENSMUSG00000056091	St3gal5	3S-T|Siat9|[a]2	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-106683545-4	chr8	106683423	106683623	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173037, intron 1 of 17)	intron (NM_173037, intron 1 of 17)	455.0	NM_173037	272538.0	Mm.87151	NM_173037	ENSMUSG00000041949	Tango6	AW413431|E330010G16|Tmco7	transport and golgi organization 6	protein-coding	2.2833322827921	2.42358790511417	1.76620335119171	3.15466744950768	3.20377126244669	3.22517097557389	2.00466825437498	2.94377415874514	0.789759767835369	0.319380175317576	0.821951596143819
Merged-chr19-34553148-1	chr19	34553048	34553248	+	610.0	f0_balb.idr	intron (NM_001355262, intron 1 of 2)	intron (NM_001355262, intron 1 of 2)	2060.0	NM_001355262	15958.0	Mm.2036	NM_008332	ENSMUSG00000045932	Ifit2	AV302338|Ifi54|P54	interferon-induced protein with tetratricopeptide repeats 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-61684376-4	chr14	61684265	61684465	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1992.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-3634070-4	chr13	3633991	3634191	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001267724)	promoter-TSS (NM_001267724)	59.0	NM_001267724	142688.0	Mm.253061	NM_178283	ENSMUSG00000033781	Asb13	2210015B19Rik|6430573K02Rik|Asb-13|C85285	ankyrin repeat and SOCS box-containing 13	protein-coding	5.15205782785639	4.52708452640887	4.98880042370221	4.66210963911851	4.99975284831863	4.67409594193517	4.58046949434139	5.50274892117204	0.161455853426558	0.648541935246198	0.98521222323169
Merged-chr13-110382734-3	chr13	110382682	110382882	+	830.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12262.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88479427-2	chr3	88479327	88479527	+	703.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	13885.0	NM_019390	16905.0	Mm.243014	NM_019390	ENSMUSG00000028063	Lmna	Dhe	lamin A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-121588670-2	chr14	121588570	121588770	+	659.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081039, intron 38 of 53)	intron (NM_001081039, intron 38 of 53)	-83416.0	NM_053079	56643.0	Mm.155618	NM_053079	ENSMUSG00000025557	Slc15a1	D630032F02|PECT1|PEPT1	solute carrier family 15 (oligopeptide transporter), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-73799435-2	chr13	73799335	73799535	+	665.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360694, intron 14 of 24)	intron (NM_001360694, intron 14 of 24)	35738.0	NM_011390	20499.0	Mm.275800	NM_011390	ENSMUSG00000017756	Slc12a7	AA408796|D13Ertd261e|Kcc4	solute carrier family 12, member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-3184564-1	chr9	3184464	3184664	+	541.0	f0_balb.idr	Intergenic	Intergenic	15249.0	NR_027988	114673.0	Mm.422774	NM_053265	ENSMUSG00000042360	4930433N12Rik	-	RIKEN cDNA 4930433N12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-24399528-2	chr8	24399428	24399628	+	596.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39418.0	NM_026931	69068.0	Mm.25775	NM_026931	ENSMUSG00000056313	Tcim	1110065B09Rik|1810011O10Rik|AW121743|AW321058	transcriptional and immune response regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117899025-2	chr10	117898894	117899094	+	992.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26465.0	NR_045342	71067.0	Mm.410793	NR_045342	ENSMUSG00000112500	4933411E08Rik	-	RIKEN cDNA 4933411E08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-44272807-2	chr10	44272707	44272907	+	608.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358596, intron 1 of 6)	MTD|LTR|ERVL-MaLR	4468.0	NM_001358596	11793.0	Mm.22264	NM_053069	ENSMUSG00000038160	Atg5	2010107M05Rik|3110067M24Rik|AW319544|Apg5l|Atg5l|C88337|Paddy	autophagy related 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-57640641-4	chr9	57640560	57640760	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304761, intron 2 of 14)	intron (NM_001304761, intron 2 of 14)	4993.0	NM_007783	12988.0	Mm.21974	NM_007783	ENSMUSG00000032312	Csk	AW212630|p50CSK	c-src tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-111662636-3	chr8	111662545	111662745	+	796.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011742, intron 2 of 3)	MERVL_2A-int|LTR|ERVL	19202.0	NM_011742	22640.0	Mm.4184	NM_011742	ENSMUSG00000055835	Zfp1	Fnp-1|Zfp-1|mkr-1	zinc finger protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124085005-4	chr5	124084910	124085110	+	824.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019875, intron 2 of 11)	intron (NM_019875, intron 2 of 11)	10788.0	NM_019875	56325.0	Mm.254839	NM_019875	ENSMUSG00000029408	Abcb9	TAPL|mKIAA1520	ATP-binding cassette, sub-family B (MDR/TAP), member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-45685447-4	chr14	45685345	45685545	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27302.0	NM_001042719	114874.0	Mm.121918	NM_176845	ENSMUSG00000037697	Ddhd1	Mir5131|PA-PLA1	DDHD domain containing 1	protein-coding	5.30897997786739	6.13793447126461	6.2216500042434	5.93574677959085	6.22743021455022	5.75613202729969	6.50143136545027	6.25846983932171	0.306300585192311	0.239762761875635	0.736450833501568
Merged-chr17-6655372-4	chr17	6655242	6655442	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166630, intron 1 of 4).2	CpG	489.0	NM_001166630	100040563.0	Mm.457381	NM_001166630	ENSMUSG00000000579	Dynlt1c	100040603|Dynlt1d	dynein light chain Tctex-type 1C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5846196-4	chr17	5846100	5846300	+	933.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025664, intron 1 of 17)	L1MEd|LINE|L1	4820.0	NM_025664	66616.0	Mm.89515	NM_025664	ENSMUSG00000002365	Snx9	2700073N08Rik|SDP1|SH3PX1	sorting nexin 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-62952835-3	chr13	62952738	62952938	+	626.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12055.0	NM_001289926	72061.0	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	0.0413583308445674	0.0650952456793921	0.261131827524548	0.0514207896698608	0.0428650348630863	0.0668161323618502	1.01646728909028	0.866810309119031	3.48539070655581	0.100900337139447	1
Merged-chr10-96686289-4	chr10	96686199	96686399	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	69298.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89251482-3	chr3	89251441	89251641	+	797.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5068.0	NM_001310625	66059.0	Mm.177991	NM_025327	ENSMUSG00000042747	Krtcap2	0610010I12Rik|Kcp2	keratinocyte associated protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-85882228-1	chr1	85882128	85882328	+	650.0	f0_balb.idr	Intergenic	IAPEY3-int|LTR|ERVK	-12282.0	NM_022417	64294.0	Mm.29870	NM_022417	ENSMUSG00000026223	Itm2c	3110038L02Rik|BRI3|Bricd2c|E25|E25C|ITM3	integral membrane protein 2C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-94786194-2	chr11	94786071	94786271	+	629.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3468.0	NM_001163172	544806.0	Mm.379774	NM_001034896	ENSMUSG00000075610	Tmem92	AU016430|Tmem92-ps	transmembrane protein 92	protein-coding	0.352387891925804	1.03157653307301	0.85792182273699	0.36329762794501	0.354018361890202	1.04347950865442	0.868210266942921	0.36443892953186	0.0400273943291098	0.982692899925454	1
Merged-chr2-168170409-4	chr2	168170313	168170513	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1K|LTR|ERVL-MaLR	-15900.0	NR_040327	77017.0	Mm.407822	NR_040327	ENSMUSG00000087648	E130018N17Rik	-	RIKEN cDNA E130018N17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-17624033-4	chr17	17623944	17624144	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172827, intron 1 of 17)	CpG	445.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-74104697-4	chr10	74104598	74104798	+	917.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142748, intron 3 of 25)	intron (NM_001142748, intron 3 of 25)	282831.0	NM_001142735	11994.0	Mm.338933	NM_023115	ENSMUSG00000052613	Pcdh15	BB078305|Gm9815|Ush1f|av|nmf19|roda	protocadherin 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-94431193-4	chr3	94431093	94431293	+	942.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001357711, exon 14 of 14)	3' UTR (NM_001357711, exon 14 of 14)	5458.0	NM_016901	53814.0	Mm.440422	NM_016901	ENSMUSG00000028141	Oaz3	AZ3|Az-3|Oaz-t	ornithine decarboxylase antizyme 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135485461-2	chr5	135485361	135485561	+	759.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146001, intron 1 of 30)	intron (NM_146001, intron 1 of 30)	59661.0	NM_146001	215114.0	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-84407093-4	chr1	84406982	84407182	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152915, intron 9 of 12)	intron (NM_152915, intron 9 of 12)	-122437.0	NM_001003948	98496.0	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4|P-CLI1	phosphotyrosine interaction domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-128357253-4	chr8	128357161	128357361	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1812.0	NM_001358959	18186.0	Mm.271745	NM_008737	ENSMUSG00000025810	Nrp1	C530029I03|NP-1|NPN-1|Npn1|Nrp	neuropilin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-139248746-1	chr7	139248646	139248846	+	991.0	f0_balb.idr	intron (NM_001098636, intron 1 of 2)	CpG	264.0	NM_001098636	101631.0	Mm.334300	NM_001033206	ENSMUSG00000060260	Pwwp2b	AI594893|D7Ertd517e|D930023J19Rik|Pwwp2	PWWP domain containing 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-10845740-2	chr17	10845640	10845840	+	639.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001317726, intron 1 of 6)	RMER17C-int|LTR|ERVK	5381.0	NM_016694	50873.0	Mm.311110	NM_016694	ENSMUSG00000023826	Park2	PRKN	Parkinson disease (autosomal recessive, juvenile) 2, parkin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114996783-5	chr11	114996601	114996801	+	816.133362	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_134158)	TTS (NM_134158)	5179.0	NM_134158	140497.0	Mm.2699	NM_134158	ENSMUSG00000044811	Cd300c2	CLM4|Cd300c|Cd300d|DIgR1|Igsf7|Lmir2|MAIR-II	CD300C molecule 2	protein-coding	-0.0771994357260673	0.731508736271458	-0.0634012768391765	-0.068559440686285	0.0893778894808799	0.744733202630015	-0.0619328886060272	-0.0676558647314058	0.231328417981261	0.917321360808599	1
Merged-chr4-88033413-4	chr4	88033324	88033524	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027326)	promoter-TSS (NM_027326)	-17.0	NM_027326	70122.0	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-122189697-2	chr7	122189597	122189797	+	860.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-3466.0	NM_001316689	26918.0	Mm.20452	NM_012016	ENSMUSG00000030866	Ern2	Ern1|Ire1|Ire1b|ire1-beta|mIre1	endoplasmic reticulum (ER) to nucleus signalling 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-92944386-1	chr6	92944286	92944486	+	766.0	f0_balb.idr	intron (NR_015530, intron 1 of 2)	intron (NR_015530, intron 1 of 2)	3804.0	NR_015530	330385.0	Mm.483472	NR_015530	ENSMUSG00000097462	9530026P05Rik	B430306B02	RIKEN cDNA 9530026P05 gene	ncRNA	-0.96872772160474	-1.32273183724778	-1.33281931103617	-1.341105462352	-1.352873239599	-1.1618238249861	-1.33053572808161	-1.33962224522818	-0.988479248830311	0.772115946896232	1
Merged-chr4-9666827-2	chr4	9666727	9666927	+	640.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290367, intron 1 of 22)	intron (NM_001290367, intron 1 of 22)	2335.0	NM_023066	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	-1.53362919331644	-1.50201671710775	-1.51157659084044	-1.08120497225282	-1.53141005593807	-1.49994505258991	-1.50941244497383	-1.51802371459528	-1.94474658522739	0.577200604274218	1
Merged-chr9-48494536-4	chr9	48494420	48494620	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001004191)	promoter-TSS (NM_001004191)	810.0	NM_001326355	67010.0	Mm.76911	NM_144948	ENSMUSG00000042396	Rbm7	1200007M24Rik|1500011D06Rik|AU041934|AW554393	RNA binding motif protein 7	protein-coding	4.52147585370893	2.57939746330335	4.56362419603783	3.8448197956817	5.07924366652478	4.58696915904125	5.32373836786671	5.00859146176653	1.17001541359956	0.00915905837642814	0.102191924116911
Merged-chr6-134771332-2	chr6	134771225	134771425	+	721.5	f0_c57.idr|f1_c57bl6.idr	intron (NM_130447, intron 1 of 6)	L1Md_F2|LINE|L1	-21035.0	NR_151454	105242798.0	Mm.398227	NR_151454		1700055D16Rik	-	RIKEN cDNA 1700055D16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34024738-4	chr17	34024637	34024837	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009066)	promoter-TSS (NM_009066)	-57.0	NM_009066	19763.0	Mm.20343	NM_009066	ENSMUSG00000024325	Ring1	Ring1A	ring finger protein 1	protein-coding	4.65115104930781	3.95172334488898	3.81721587543727	5.27248963896657	4.19106272109457	3.89764794090797	4.25464784825467	2.87533728202628	-0.861646400905329	0.0886500230874726	0.458748435753151
Merged-chr1-16669860-1	chr1	16669760	16669960	+	986.0	f1_balb.idr	intron (NM_027415, intron 2 of 2)	B1_Mur2|SINE|Alu	4669.0	NM_026392	70397.0	Mm.194225	NM_026392	ENSMUSG00000025940	Tmem70	1110020A09Rik|2210416J16Rik	transmembrane protein 70	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31171593-2	chr14	31171493	31171693	+	649.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_022656, exon 21 of 21)	exon (NM_022656, exon 21 of 21)	-2952.0	NM_138672	192187.0	Mm.220821	NM_138672	ENSMUSG00000042286	Stab1	FEEL-1|FELE-1|MFEEL-1|MS-1|STAB-1|mKIAA0246	stabilin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-41015267-1	chr13	41015167	41015367	+	545.0	f1_balb.idr	promoter-TSS (NM_025387)	promoter-TSS (NM_025387)	-983.0	NM_025387	66154.0	Mm.30005	NM_025387	ENSMUSG00000021361	Tmem14c	1110021D01Rik|AU020193|HSPC194	transmembrane protein 14C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-104153022-1	chr13	104152922	104153122	+	623.5	f0_balb.idr	intron (NM_025879, intron 7 of 12)	intron (NM_025879, intron 7 of 12)	25444.0	NM_025879	66975.0	Mm.272541	NM_025879	ENSMUSG00000021711	Trappc13	2410002O22Rik|2610524F24Rik|AI451892|AU017229	trafficking protein particle complex 13	protein-coding	0.273445071259529	0.325919656159777	0.309414789872963	0.296243384927281	0.27691510079901	0.616541570376761	1.9157815049498	1.68639450310624	5.04190152019676	0.00424683053287714	0.0588830578583897
Merged-chr8-91377016-4	chr8	91376918	91377118	+	913.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011936, intron 1 of 8)	intron (NM_011936, intron 1 of 8)	63493.0	NM_011936	26383.0	Mm.4375	NM_011936	ENSMUSG00000055932	Fto	AW743446|mKIAA1752	fat mass and obesity associated	protein-coding	3.42990740796354	3.94953652984217	3.34825642522491	1.88703935773072	3.67550344866755	2.96069401464525	2.85831175845123	3.0935207181006	-0.236039982833212	0.728624783794009	0.998431161219273
Merged-chr8-115420612-2	chr8	115420523	115420723	+	1000.0	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	286271.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-127259342-2	chr2	127259242	127259442	+	581.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_175145, exon 4 of 4)	3' UTR (NM_175145, exon 4 of 4)	-10887.0	NM_139308	99138.0	Mm.41271	NM_139308	ENSMUSG00000027367	Stard7	AI852671|AL022671|AW544915	START domain containing 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-76615023-4	chr12	76614913	76615113	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013675, intron 15 of 35)	ORR1D2|LTR|ERVL-MaLR	-67088.0	NR_046044	100504549.0	Mm.440349	NR_046044	ENSMUSG00000112388	AI463170	-	expressed sequence AI463170	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-121293037-2	chr3	121292937	121293137	+	884.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_155539, intron 1 of 2)	intron (NR_155539, intron 1 of 2)	1297.0	NM_024178	66789.0	Mm.269881	NM_024178	ENSMUSG00000039887	Alg14	5430428G01Rik|AI854024	asparagine-linked glycosylation 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-60751317-2	chr13	60751217	60751417	+	644.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001285917, exon 22 of 27)	exon (NM_001285917, exon 22 of 27)	35047.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-167415060-4	chr1	167414944	167415144	+	692.479187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21247.0	NM_025569	66447.0	Mm.218286	NM_025569	ENSMUSG00000026688	Mgst3	2010012L10Rik|2010306B17Rik|2700004G04Rik|AA516734|GST-III	microsomal glutathione S-transferase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-121191421-4	chr5	121191399	121191599	+	993.53125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001109992)	promoter-TSS (NM_001109992)	-102.0	NM_011202	19247.0	Mm.8681	NM_011202	ENSMUSG00000043733	Ptpn11	2700084A17Rik|AW536184|PTP1D|PTP2C|SAP-2|SH-PTP2|SH-PTP3|SHP-2|Shp2|Syp	protein tyrosine phosphatase, non-receptor type 11	protein-coding	1.26235921142139	2.2324045518543	2.15038900651235	1.08035156525826	1.0464914778144	2.25040868919724	2.62701365664248	1.98019826126808	0.776284578193125	0.498260008865002	0.937009966514467
Merged-chr15-97164839-4	chr15	97164746	97164946	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155278, intron 2 of 3)	intron (NR_155278, intron 2 of 3)	2398.0	NR_155278	102635594.0	Mm.392594	NR_155278	ENSMUSG00000116295	Gm32885	-	predicted gene, 32885	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-110284732-4	chr5	110284615	110284815	+	919.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008993, intron 1 of 4)	MTE2b|LTR|ERVL-MaLR	1453.0	NM_008993	19301.0	Mm.21853	NM_008993	ENSMUSG00000029499	Pxmp2	22kDa|PMP22	peroxisomal membrane protein 2	protein-coding	0.241899077797133	0.597932700366924	0.164996155089998	-0.012358914844264	-0.0179768696679889	-0.00205203907947177	-0.00724135649998686	0.516601371701832	-0.904223038046977	0.671134300890229	1
Merged-chr11-96881520-2	chr11	96881420	96881620	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	31127.0	NR_029562	387170.0		NR_029562	ENSMUSG00000065515	Mir152	Mirn152|mir-152|mmu-mir-152	microRNA 152	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-66046759-2	chr5	66046659	66046859	+	780.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_139065, intron 2 of 6)	intron (NM_139065, intron 2 of 6)	-42474.0	NR_027961	231253.0	Mm.436542	NM_177679	ENSMUSG00000054598	9130230L23Rik	-	RIKEN cDNA 9130230L23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-45262324-2	chr9	45262317	45262517	+	631.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_136903, intron 4 of 5)	intron (NR_136903, intron 4 of 5)	4290.0	NR_106054	102466803.0		NR_106054	ENSMUSG00000098361	Mir7086	Gm27643|mmu-mir-7086	microRNA 7086	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-27851065-2	chr15	27850965	27851165	+	546.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081302, exon 15 of 57)	exon (NM_001081302, exon 15 of 57)	-169523.0	NM_001242423	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25217822-4	chr7	25217713	25217913	+	862.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_106015)	promoter-TSS (NR_106015)	-88.0	NR_106015	102466794.0		NR_106015	ENSMUSG00000098325	Mir7048	Gm27274|mmu-mir-7048	microRNA 7048	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-63131886-4	chr14	63131792	63131992	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007798, intron 1 of 9)	intron (NM_007798, intron 1 of 9)	9430.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96728439-4	chr3	96728338	96728538	+	941.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028925)	promoter-TSS (NM_028925)	827.0	NM_026406	67845.0	Mm.386792	NM_026406	ENSMUSG00000028098	Rnf115	2610028E05Rik|AU042696|Zfp364	ring finger protein 115	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-13599937-3	chr6	13599849	13600049	+	723.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155435, intron 1 of 3)	intron (NR_155435, intron 1 of 3)	8149.0	NR_155435	101118.0	Mm.254845	NM_028990	ENSMUSG00000029569	Tmem168	5730526F17Rik|8430437G11Rik|AI462344|AI504145	transmembrane protein 168	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-90509540-4	chr3	90509433	90509633	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001293781)	promoter-TSS (NM_001293781)	-35.0	NM_001293778	66511.0	Mm.154136	NM_023215	ENSMUSG00000001017	Chtop	2500003M10Rik|Fop|Srag	chromatin target of PRMT1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30860110-3	chr7	30860030	30860230	+	716.75	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_194057)	TTS (NM_194057)	1340.0	NM_194057	233081.0	Mm.425422	NM_194057	ENSMUSG00000044453	Ffar1	Gpr40	free fatty acid receptor 1	protein-coding	2.0514910522906	2.09239878785263	1.12775278322325	2.49782710127365	2.0696141812911	2.22969557227348	1.13355060223133	1.34517618848336	-0.655330305550717	0.562885299035588	0.960362415684079
Merged-chr1-10234313-2	chr1	10234213	10234413	+	603.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-1643.0	NM_001102430	211673.0	Mm.229141	NM_001102430	ENSMUSG00000067851	Arfgef1	ARFGEP1|BIG1|D130059B05Rik|D730028O18Rik|P200	ADP-ribosylation factor guanine nucleotide-exchange factor 1(brefeldin A-inhibited)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-95565497-3	chr9	95565428	95565628	+	734.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5711.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-111313020-2	chr14	111312920	111313120	+	742.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus1|LINE|L1	-362095.0	NM_198865	75409.0	Mm.235097	NM_029273	ENSMUSG00000033214	Slitrk5	2610019D03Rik	SLIT and NTRK-like family, member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-29444628-2	chr17	29444528	29444728	+	555.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-46417.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-72307022-1	chr1	72306922	72307122	+	589.0	f0_balb.idr	promoter-TSS (NM_009533)	promoter-TSS (NM_009533)	-399.0	NM_001357520	22596.0	Mm.246952	NM_009533	ENSMUSG00000026187	Xrcc5	AI314015|CTC85|CTCBF|Ku80|Ku86	X-ray repair complementing defective repair in Chinese hamster cells 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-57534307-2	chr6	57534207	57534407	+	795.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_175523, intron 1 of 6)	intron (NM_175523, intron 1 of 6)	1119.0	NM_175523	243382.0	Mm.396893	NM_175523	ENSMUSG00000037826	Ppm1k	2900063A19Rik|A930026L03Rik|PP2Cm	protein phosphatase 1K (PP2C domain containing)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-64661518-4	chr17	64661426	64661626	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008549, intron 6 of 21)	RLTR9E|LTR|ERVK	59877.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-30850474-4	chr5	30850380	30850580	+	999.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133350, intron 1 of 6)	intron (NM_133350, intron 1 of 6)	-11327.0	NM_001310516	100732.0	Mm.332295	NM_133350	ENSMUSG00000029166	Mapre3	AI790651|EB2|EB3|EBF3|RP3	microtubule-associated protein, RP/EB family, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-55630909-2	chr4	55630794	55630994	+	668.75	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-98419.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	1.28934431997528	3.82617382600562	1.12151744284882	1.07637731587691	3.28499476265761	3.80314237459318	1.46209302450465	2.06117033768708	0.778516116747446	0.673485676052305	0.99440487726309
Merged-chr4-132539667-4	chr4	132539577	132539777	+	686.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172400, intron 2 of 8)	intron (NM_172400, intron 2 of 8)	4118.0	NM_172400	68598.0	Mm.29685	NM_172400	ENSMUSG00000054405	Dnajc8	1110021D09Rik|2010009J04Rik|AL024084|AU019262|AU044514	DnaJ heat shock protein family (Hsp40) member C8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-29948390-4	chr19	29948286	29948486	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164724, intron 1 of 7)	intron (NM_001164724, intron 1 of 7)	2596.0	NM_001164724	77125.0	Mm.182359	NM_133775	ENSMUSG00000024810	Il33	9230117N10Rik|Il-33|Il1f11|NF-HEV	interleukin 33	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-69212647-2	chr10	69212565	69212765	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_001081347)	promoter-TSS (NM_001081347)	8.0	NM_001081347	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-56418209-4	chr9	56418100	56418300	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025812)	promoter-TSS (NM_025812)	-150.0	NM_172924	244895.0	Mm.490331	NM_172924	ENSMUSG00000074305	Peak1	1110049L02Rik|9530046P14|AA690169|BE132841|C230081A13Rik|SGK269|mKIAA2002	pseudopodium-enriched atypical kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-66518415-2	chr17	66518315	66518515	+	775.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_024448, intron 1 of 5)	B1_Mm|SINE|Alu	1255.0	NM_024448	19328.0	Mm.248313	NM_024448	ENSMUSG00000023460	Rab12	2900054P15Rik|AW555448|C77700	RAB12, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-24574467-4	chr4	24574382	24574582	+	874.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_199467, exon 14 of 24)	exon (NM_199467, exon 14 of 24)	78031.0	NM_199467	212377.0	Mm.120919	NM_199467	ENSMUSG00000045751	Mms22l	F730047E07Rik|Gm134	MMS22-like, DNA repair protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-138328042-3	chr1	138327929	138328129	+	848.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54291.0	NM_177397	338375.0	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-35752275-4	chr18	35752166	35752366	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11712.0	NM_001289592	72512.0	Mm.45995	NM_028261	ENSMUSG00000024349	Tmem173	2610307O08Rik|ERIS|MPYS|Mita|STING	transmembrane protein 173	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-122117325-4	chr9	122117250	122117450	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164572)	promoter-TSS (NM_001164572)	84.0	NM_001357774	20623.0	Mm.257989	NM_133741	ENSMUSG00000038145	Snrk	2010012F07Rik|AI448042|AW547029|E030034B15|R74830|mKIAA0096	SNF related kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135251162-3	chr5	135251018	135251218	+	828.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010246)	promoter-TSS (NM_010246)	-71.0	NM_010246	14371.0	Mm.6256	NM_010246	ENSMUSG00000049551	Fzd9	mfz9	frizzled class receptor 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-134725457-2	chr1	134725357	134725557	+	606.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355726, intron 1 of 8)	intron (NM_001355726, intron 1 of 8)	16157.0	NM_001355726	20980.0	Mm.5102	NM_009307	ENSMUSG00000026452	Syt2	IP4BP|R74640|mKIAA4194|sytII	synaptotagmin II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-136131253-4	chr1	136131134	136131334	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_046167)	promoter-TSS (NR_046167)	-51.0	NR_046167	329253.0	Mm.487858	NR_046167	ENSMUSG00000086264	Gm15850	6530439I21	predicted gene 15850	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-60752838-4	chr10	60752727	60752927	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023596)	promoter-TSS (NM_023596)	-45.0	NM_023596	71279.0	Mm.284462	NM_023596	ENSMUSG00000020100	Slc29a3	4933435C21Rik|AW987637|Ent3	solute carrier family 29 (nucleoside transporters), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-60611960-4	chr19	60611831	60612031	+	998.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30908.0	NM_001172096	78832.0	Mm.259026	NM_030197	ENSMUSG00000033417	Cacul1	2700078E11Rik|2810417M16Rik|9830127L17Rik|AI450346|D130033C15Rik	CDK2 associated, cullin domain 1	protein-coding	3.50859323937298	3.01725286118475	3.587205789328	3.41322308979721	4.10471787367017	3.87745851359085	2.64605342053296	2.70688837781346	0.165336260859349	0.787658127124011	0.998431161219273
Merged-chr1-105686870-2	chr1	105686770	105686970	+	949.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_029349, intron 2 of 27)	intron (NM_029349, intron 2 of 27)	23009.0	NM_029349	227446.0	Mm.337339	NM_029349	ENSMUSG00000026319	2310035C23Rik	6430401N10|Kiaa1468|Relch|mKIAA1468	RIKEN cDNA 2310035C23 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-73422661-4	chr7	73422571	73422771	+	929.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46897.0	NR_040324	319783.0	Mm.349813	NR_040324	ENSMUSG00000097756	A730056A06Rik	C76391	RIKEN cDNA A730056A06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-24395023-4	chr9	24394943	24395143	+	859.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	108097.0	NM_001359948	244745.0	Mm.38526	NM_172920	ENSMUSG00000043067	Dpy19l1	1100001I19Rik|6030402K12|AI225861|AW558481	dpy-19-like 1 (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81008468-2	chr15	81008368	81008568	+	826.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357669, intron 9 of 20)	intron (NM_001357669, intron 9 of 20)	30703.0	NM_134091	105835.0	Mm.274943	NM_134091	ENSMUSG00000042303	Sgsm3	1810012I01Rik|AI428557|BB175482|Cip85|R75178|RUSC3|Rutbc3	small G protein signaling modulator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-121408859-2	chr10	121408759	121408959	+	617.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43769.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-29030715-3	chr17	29030585	29030785	+	852.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-1975.0	NM_013663	20383.0	Mm.6787	NM_013663	ENSMUSG00000071172	Srsf3	AL024116|Sfrs3|X16	serine/arginine-rich splicing factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-36644423-2	chr16	36644323	36644523	+	570.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019388, intron 1 of 7)	(CA)n|Simple_repeat|Simple_repeat	21654.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-145880670-1	chr2	145880570	145880770	+	1000.0	f1_c57bl6.idr	intron (NM_028724, intron 11 of 12)	intron (NM_028724, intron 11 of 12)	-22571.0	NM_026425	67877.0	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	0.367590342971359	0.703080036202743	0.252211959067295	0.248458401777223	0.887430259573425	0.711827010030737	0.253290202236702	0.249112090657621	1.1470466489776	0.562181891611403	1
Merged-chr2-164835038-4	chr2	164834938	164835138	+	990.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038492, intron 5 of 14)	intron (NM_001038492, intron 5 of 14)	1265.0	NM_008906	19025.0	Mm.359633	NM_008906	ENSMUSG00000017760	Ctsa	AU019505|PPCA|Ppgb	cathepsin A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-99205365-4	chr6	99205264	99205464	+	968.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001197321, intron 2 of 17)	intron (NM_001197321, intron 2 of 17)	61151.0	NM_001197321	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-137862774-2	chr3	137862622	137862822	+	808.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1765.0	NM_001316995	51788.0	Mm.117541	NM_016750	ENSMUSG00000037894	H2afz	H2A.Z|H2a.z-1	H2A histone family, member Z	protein-coding	0.543437736772494	1.57644864816606	0.566220008459895	1.0397819644344	0.983610149400083	1.13812130422175	0.568628997674098	0.909647604933143	-0.452511378025898	0.77520385817502	0.998431161219273
Merged-chr6-39567737-4	chr6	39567616	39567816	+	738.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6160.0	NM_178873	57869.0	Mm.247957	NM_178873	ENSMUSG00000046947	Adck2	AA408112|BB006057	aarF domain containing kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-8926833-4	chr4	8926799	8926999	+	906.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	175575.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-149471436-3	chr5	149471340	149471540	+	846.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001310763)	TTS (NM_001310763)	31780.0	NM_001310765	75860.0	Mm.159605	NM_029464	ENSMUSG00000029660	Tex26	4930588N13Rik	testis expressed 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-88439939-2	chr10	88439839	88440039	+	547.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001004164, intron 18 of 20)	intron (NM_001004164, intron 18 of 20)	-19648.0	NM_011517	20962.0	Mm.297977	NM_011517	ENSMUSG00000020059	Sycp3	Cor1|Scp3	synaptonemal complex protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32715187-2	chr2	32715087	32715287	+	877.599976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2215.0	NR_039536	100628606.0		NR_039536	ENSMUSG00000105841	Mir3960	mmu-mir-3960	microRNA 3960	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4872265-2	chr16	4872165	4872365	+	580.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7586.0	NM_145359	207740.0	Mm.268895	NM_145359	ENSMUSG00000039568	Ubald1	1500031H01Rik|BC013706|Fam100a	UBA-like domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120537893-7	chr8	120537797	120537997	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_106159)	promoter-TSS (NR_106159)	-171.0	NR_151732	74227.0	Mm.334856	NR_151732	ENSMUSG00000102737	1700016A09Rik	-	RIKEN cDNA 1700016A09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-19094498-4	chr10	19094405	19094605	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47244.0	NR_038021	100504265.0	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-170219764-2	chr2	170219664	170219864	+	773.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-77089.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71633865-2	chr8	71633765	71633965	+	882.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001029873, intron 39 of 41)	intron (NM_001029873, intron 39 of 41)	-2759.0	NR_106035	102466799.0		NR_106035	ENSMUSG00000098976	Mir6769b	Gm27546|mmu-mir-6769b	microRNA 6769b	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-82954311-4	chr18	82954233	82954433	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177464, intron 1 of 5)	intron (NM_001177464, intron 1 of 5)	-33773.0	NR_033307	75853.0	Mm.420737	NR_033307		4930592I03Rik	-	RIKEN cDNA 4930592I03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-87201640-1	chr1	87201540	87201740	+	687.5	f0_balb.idr	Intergenic	Intergenic	-4171.0	NM_009604	11449.0	Mm.2810	NM_009604	ENSMUSG00000026253	Chrng	Achr-3|Acrg	cholinergic receptor, nicotinic, gamma polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30359190-4	chr2	30359067	30359267	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001289710, exon 1 of 10)	exon (NM_001289710, exon 1 of 10)	149.0	NM_139302	227700.0	Mm.33343	NM_139302	ENSMUSG00000026860	Sh3glb2	SPAS-1	SH3-domain GRB2-like endophilin B2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-121618790-4	chr3	121618692	121618892	+	829.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	24693.0	NR_036456	100503044.0	Mm.65320	NM_176992	ENSMUSG00000044522	A730020M07Rik	-	RIKEN cDNA A730020M07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-45881013-4	chr1	45880902	45881102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	44592.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-45069039-2	chr8	45068939	45069139	+	861.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008639)	promoter-TSS (NM_008639)	-171.0	NM_008639	17773.0	Mm.5133	NM_008639	ENSMUSG00000054764	Mtnr1a	MR|MelR	melatonin receptor 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166750799-4	chr2	166750700	166750900	+	873.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36968.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-39371217-2	chr3	39371117	39371317	+	645.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	484277.0	NM_183221	329628.0	Mm.316210	NM_183221	ENSMUSG00000046743	Fat4	6030410K14Rik|9430004M15	FAT atypical cadherin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-108740737-4	chr6	108740621	108740821	+	880.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-42338.0	NM_026011	67166.0	Mm.271178	NM_026011	ENSMUSG00000030105	Arl8b	2610313E07Rik|3100002J04Rik|Arl10c|gie1	ADP-ribosylation factor-like 8B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-116954604-2	chr2	116954504	116954704	+	569.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54452.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-148419815-3	chr3	148419717	148419917	+	813.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	534818.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-6285548-4	chr7	6285444	6285644	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1036.0	NM_001024928	384763.0	Mm.276279	NM_001024928	ENSMUSG00000054893	Zfp667	A830025F02Rik|Mip1|ZNF667	zinc finger protein 667	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95659550-4	chr3	95659447	95659647	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008562, intron 1 of 2)	intron (NM_008562, intron 1 of 2)	826.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-11600182-2	chr2	11600082	11600282	+	668.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_152824, intron 2 of 11)	intron (NM_152824, intron 2 of 11)	3017.0	NM_152824	76938.0	Mm.182769	NM_152824	ENSMUSG00000037197	Rbm17	2700027J02Rik	RNA binding motif protein 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-84465936-2	chr1	84465836	84466036	+	884.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_152915, intron 7 of 12)	intron (NM_152915, intron 7 of 12)	-181291.0	NM_001003948	98496.0	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4|P-CLI1	phosphotyrosine interaction domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4397903-3	chr19	4397766	4397966	+	963.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001001984)	promoter-TSS (NM_001001984)	-789.0	NM_001001984	225876.0	Mm.31941	NM_001001984	ENSMUSG00000054611	Kdm2a	100043628|5530401A10Rik|AA589516|AW536790|Cxxc8|Fbl11|Fbl7|Fbxl11|Gm4560|Jhdm1|Jhdm1a|lalina	lysine (K)-specific demethylase 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-145214618-4	chr4	145214526	145214726	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011610, exon 10 of 10)	3' UTR (NM_011610, exon 10 of 10)	-19621.0	NM_001276465	230895.0	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-69346645-4	chr18	69346574	69346774	+	966.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 1 of 19)	intron (NM_001361128, intron 1 of 19)	514.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-156719091-4	chr2	156719049	156719249	+	977.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040505, intron 1 of 3)	MTB_Mm|LTR|ERVL-MaLR	1760.0	NR_040505	74846.0	Mm.443946	NR_040505	ENSMUSG00000086638	4930405A21Rik	-	RIKEN cDNA 4930405A21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-94704143-4	chr8	94704022	94704222	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7880.0	NM_026385	67801.0	Mm.279977	NM_026385	ENSMUSG00000031775	Pllp	0610010I06Rik|AV001002|Plapi|Tm4sf11	plasma membrane proteolipid	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-48579494-4	chr6	48579337	48579537	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR42-int|LTR|ERVK	-6635.0	NM_001347167	71660.0	Mm.28231	NM_027852	ENSMUSG00000009281	Rarres2	0610007L05Rik|AI303516	retinoic acid receptor responder (tazarotene induced) 2	protein-coding	1.31883569023808	0.773478119386119	2.08868878490496	0.745784262715891	0.917266121628414	1.38260005321506	1.32902041603447	1.13324500260414	-0.627711889628976	0.646755929272155	0.984490176318369
Merged-chr10-84019554-2	chr10	84019454	84019654	+	609.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	81143.0	NR_152790	102637349.0	Mm.402869	NR_152790	ENSMUSG00000111049	Gm34184	-	predicted gene, 34184	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-38708345-2	chr15	38708245	38708445	+	558.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20171.0	NR_131206	105463124.0	Mm.432448	NR_131206	ENSMUSG00000115620	Gm45924	Borg	predicted gene, 45924	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-144202298-7	chr3	144202207	144202407	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161770)	promoter-TSS (NM_001161770)	25.0	NM_001161770	16911.0	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-142376263-4	chr5	142376166	142376366	+	872.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25231.0	NM_199068	17425.0	Mm.24214	NM_010812	ENSMUSG00000056493	Foxk1	A630048H08Rik|AI463295|Gm10868|Mnf	forkhead box K1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-109023478-4	chr9	109023389	109023589	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153430, intron 9 of 13)	MLT1-int|LTR|ERVL-MaLR	-15078.0	NM_001284332	66940.0	Mm.196533	NM_025858	ENSMUSG00000025647	Shisa5	2310008D10Rik|6430628I05Rik|Scotin|mShisa5	shisa family member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-20234222-2	chr12	20234122	20234322	+	826.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	MMERGLN-int|LTR|ERV1	581557.0	NR_015521	69513.0	Mm.273972	NR_015521	ENSMUSG00000099759	1700030C10Rik	-	RIKEN cDNA 1700030C10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-84589735-4	chr18	84589624	84589824	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033341)	promoter-TSS (NM_001033341)	-220.0	NM_001033341	240476.0	Mm.329575	NM_001033341	ENSMUSG00000048410	Zfp407	6430585N13Rik|Gm333|Gm334|Gm948|ZNF407	zinc finger protein 407	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-79871334-4	chr11	79871242	79871442	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	91045.0	NM_144826	216987.0	Mm.274961	NM_144826	ENSMUSG00000035575	Utp6	4732497O03Rik|HCA66	UTP6 small subunit processome component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-11130165-2	chr4	11130065	11130265	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-3932.0	NR_030455	735261.0		NR_030455	ENSMUSG00000105333	Mir684-2	Mirn684-2	microRNA 684-2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-6961766-4	chr17	6961660	6961860	+	893.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_147155)	promoter-TSS (NM_147155)	-604.0	NM_147155	380608.0	Mm.371734	NM_147155	ENSMUSG00000052031	Tagap1	2610315E15Rik|AA415005|FKSG15	T cell activation GTPase activating protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35835902-2	chr17	35835802	35836002	+	871.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_011655, exon 4 of 4)	exon (NM_011655, exon 4 of 4)	2399.0	NM_011655	22154.0	Mm.273538	NM_011655	ENSMUSG00000001525	Tubb5	AA408537|AI596182|B130022C14Rik|M(beta)5	tubulin, beta 5 class I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44681342-2	chr9	44681242	44681442	+	597.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001277847, exon 3 of 14)	exon (NM_001277847, exon 3 of 14)	8109.0	NM_001277847	58866.0	Mm.45380	NM_021481	ENSMUSG00000032098	Treh	2210412M19Rik	trehalase (brush-border membrane glycoprotein)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-89575134-4	chr1	89575041	89575241	+	972.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037136, intron 1 of 16)	intron (NM_001037136, intron 1 of 16)	108751.0	NR_015540	74403.0	Mm.444291	NR_015540		4933400F21Rik	1700091C04Rik|4930565K10Rik	RIKEN cDNA 4933400F21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-50306885-3	chr16	50306780	50306980	+	777.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027444, intron 3 of 16)	intron (NM_027444, intron 3 of 16)	125509.0	NM_027444	70508.0	Mm.28940	NM_027444	ENSMUSG00000022641	Bbx	5530401J07Rik|5730403O13Rik	bobby sox HMG box containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-109323983-4	chr3	109323845	109324045	+	874.479126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16738.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-6992840-2	chr3	6992740	6992940	+	574.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-372397.0	NM_027048	69347.0	Mm.45822	NM_027048	ENSMUSG00000069118	1700008P02Rik	-	RIKEN cDNA 1700008P02 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-121427379-2	chr5	121427279	121427479	+	661.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172722, intron 15 of 23)	intron (NM_172722, intron 15 of 23)	25095.0	NM_026129	67397.0	Mm.154570	NM_026129	ENSMUSG00000029616	Erp29	1200015M03Rik|2810446M09Rik|AW209030|Erp28|Erp31|PDI-Db	endoplasmic reticulum protein 29	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-42053913-2	chr13	42053813	42054013	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007772, intron 1 of 8)	intron (NM_007772, intron 1 of 8)	1892.0	NM_007772	110521.0	Mm.4808	NM_007772	ENSMUSG00000021366	Hivep1	Cryabp1	human immunodeficiency virus type I enhancer binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-6390260-2	chr15	6390160	6390360	+	726.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037905, intron 1 of 13)	intron (NM_001037905, intron 1 of 13)	3512.0	NM_001310446	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-57583664-3	chr18	57583559	57583759	+	634.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029290, intron 3 of 6)	intron (NM_029290, intron 3 of 6)	-31262.0	NR_015494	75084.0	Mm.243841	NR_015494	ENSMUSG00000086607	4930511M06Rik	-	RIKEN cDNA 4930511M06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3426080-4	chr12	3425945	3426145	+	857.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172421)	promoter-TSS (NM_172421)	702.0	NR_030694	100043040.0	Mm.415417	NR_030694	ENSMUSG00000071456	1110002L01Rik	-	RIKEN cDNA 1110002L01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-11196416-3	chr12	11196300	11196500	+	998.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_131084, exon 3 of 5)	non-coding (NR_131084, exon 3 of 5)	8102.0	NR_131084	77442.0	Mm.159922	NR_131083	ENSMUSG00000112041	9530020I12Rik	-	RIKEN cDNA 9530020I12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-44779600-2	chr16	44779500	44779700	+	776.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_021325, intron 1 of 6)	intron (NM_021325, intron 1 of 6)	13864.0	NM_021325	57781.0	Mm.416152	NM_021325	ENSMUSG00000022667	Cd200r1	CD200R|Mox2r|OX2R	CD200 receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-70990117-4	chr17	70990012	70990212	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023402, intron 1 of 3)	intron (NM_023402, intron 1 of 3)	404.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-60279819-2	chr2	60279719	60279919	+	554.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025422, intron 1 of 4)	MLT2B1|LTR|ERVL	4665.0	NM_025422	66205.0	Mm.227281	NM_025422	ENSMUSG00000060703	Cd302	1110055L24Rik|AI159627	CD302 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120572775-4	chr8	120572689	120572889	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_198671, exon 11 of 16)	exon (NM_198671, exon 11 of 16)	16286.0	NM_178856	272551.0	Mm.275910	NM_178856	ENSMUSG00000031821	Gins2	2210013I18Rik|4833427B12Rik|AI323585|Pfs2	GINS complex subunit 2 (Psf2 homolog)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-144245898-3	chr1	144245769	144245969	+	964.892883	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015811, intron 4 of 4)	intron (NM_015811, intron 4 of 4)	3235.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67637445-2	chr10	67637345	67637545	+	747.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-65486.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-47253319-2	chr19	47253244	47253444	+	625.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_021360, exon 4 of 6)	exon (NM_021360, exon 4 of 6)	20245.0	NR_105961	102466782.0		NR_105961	ENSMUSG00000098786	Mir6995	Gm27576|mmu-mir-6995	microRNA 6995	ncRNA	-0.111565448257343	-0.545227518730844	-0.548459408470454	-0.550941108567326	-0.554430428142207	-0.544496634763374	-0.377771860892882	-0.144980882621382	0.29357657970118	0.912691822761524	1
Merged-chr12-21369185-4	chr12	21369077	21369277	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291871, intron 1 of 18)	(CAGA)n|Simple_repeat|Simple_repeat	4455.0	NR_102380	11491.0	Mm.27681	NM_009615	ENSMUSG00000052593	Adam17	CD156b|Tace	a disintegrin and metallopeptidase domain 17	protein-coding	4.43312072504665	4.64217292607993	4.54642814162446	4.98567574070756	4.29000965742879	5.42072176161291	3.35032859383748	5.13217189380348	0.111961153591923	0.80214094598222	0.998431161219273
Merged-chr18-14684964-2	chr18	14684864	14685064	+	874.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2050.0	NM_001161371	268996.0	Mm.31761	NM_009280	ENSMUSG00000037013	Ss18	D130059H17|Ssxt|Syt	SS18, nBAF chromatin remodeling complex subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-113711005-1	chr9	113710905	113711105	+	626.0	f1_balb.idr	Intergenic	Intergenic	-2746.0	NM_011052	18571.0	Mm.29816	NM_011052	ENSMUSG00000032504	Pdcd6ip	AI480591|AW544830|Aip1|Alix|C76364|Eig2|mKIAA1375	programmed cell death 6 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3905566-7	chr19	3905472	3905672	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016921)	promoter-TSS (NM_016921)	-342.0	NM_016921	27060.0	Mm.271689	NM_016921	ENSMUSG00000001750	Tcirg1	ATP6N1C|ATP6a3|Atp6i|OC-116|OPTB1|Stv1|TIRC7|Vph1|oc	T cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 protein A3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-57429903-4	chr1	57429767	57429967	+	857.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23193.0	NM_001302963	68736.0	Mm.288490	NM_001037742	ENSMUSG00000048495	Tyw5	1110034B05Rik	tRNA-yW synthesizing protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-34913342-2	chr7	34913242	34913442	+	773.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008820, intron 1 of 14)	PB1D10|SINE|Alu	935.0	NM_008820	18624.0	Mm.69751	NM_008820	ENSMUSG00000063931	Pepd	Pep-4|Pep4|dal	peptidase D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-89372140-3	chr7	89372037	89372237	+	686.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360746, intron 1 of 14)	intron (NM_001360746, intron 1 of 14)	32085.0	NM_001360746	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-14860150-4	chr9	14860094	14860294	+	747.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310734)	promoter-TSS (NM_001310734)	-16.0	NM_001310734	14608.0	Mm.4672	NM_010287	ENSMUSG00000031932	Gpr83	AW045253|Gir|Gpr72|RP105|RP39|RP82	G protein-coupled receptor 83	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-31664922-4	chr17	31664823	31665023	+	769.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6159.0	NM_001357907	108121.0	Mm.379289	NM_024187	ENSMUSG00000061613	U2af1	2010107D16Rik	U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-48278780-3	chr4	48278696	48278896	+	700.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010569)	promoter-TSS (NM_010569)	793.0	NM_029572	76299.0	Mm.317701	NM_029572	ENSMUSG00000028343	Erp44	1110001E24Rik|AI849526|AL033348|Txndc4	endoplasmic reticulum protein 44	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-45321257-2	chr19	45321157	45321357	+	550.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-42477.0	NM_001360122	12234.0	Mm.119717	NM_009771	ENSMUSG00000025217	Btrc	Beta-Trcp1|E3RS-IkappaB|E3RSIkappaB|FWD1|Fbw1a|HOS|SCF b-TRCP|Slimb|b-TrCP|beta-TrCP	beta-transducin repeat containing protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-162966959-1	chr2	162966859	162967059	+	565.0	f1_c57bl6.idr	intron (NM_001081338, intron 17 of 22)	intron (NM_001081338, intron 17 of 22)	-20522.0	NM_001291154	27219.0	Mm.26462	NM_013731	ENSMUSG00000017868	Sgk2	AI098171|AW146006|Sgkl	serum/glucocorticoid regulated kinase 2	protein-coding	-0.990219700220919	-1.06815903705124	-1.24279257567618	-1.25136460524387	-1.2591314987605	-1.06589762089026	-1.24043020744747	-1.24983021604965	-1.18324435021495	0.700911767692951	1
Merged-chr9-43090787-2	chr9	43090687	43090887	+	605.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359232, intron 1 of 40)	intron (NM_001359232, intron 1 of 40)	14931.0	NM_001359232	69632.0	Mm.275266	NM_027144	ENSMUSG00000059495	Arhgef12	2310014B11Rik|AU019857|Larg|mKIAA0382	Rho guanine nucleotide exchange factor (GEF) 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-51710831-3	chr3	51710771	51710971	+	967.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 2 of 4)	intron (NM_001004176, intron 2 of 4)	49692.0	NM_001310482	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-31158542-1	chr9	31158442	31158642	+	545.0	f1_c57bl6.idr	exon (NM_001102456, exon 11 of 17)	exon (NM_001102456, exon 11 of 17)	-26743.0	NM_011176	19143.0	Mm.243926	NM_011176	ENSMUSG00000031995	St14	Epithin|MT-SP1|Prss14|Tmprss14|mCAP3|matriptase	suppression of tumorigenicity 14 (colon carcinoma)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139706448-1	chr5	139706348	139706548	+	541.0	f1_balb.idr	TTS (NM_174850)	TTS (NM_174850)	29885.0	NM_174850	231830.0	Mm.240510	NM_174850	ENSMUSG00000036718	Micall2	A930021H16Rik|JRAB|MICAL-L2|mFLJ00139	MICAL-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-23307645-4	chr16	23307539	23307739	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252506, intron 1 of 6)	intron (NM_001252506, intron 1 of 6)	17169.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-72848637-4	chr2	72848531	72848731	+	904.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34914.0	NR_102349	76218.0	Mm.75260	NR_102348	ENSMUSG00000085427	6430710C18Rik	5033406J01Rik	RIKEN cDNA 6430710C18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-102020071-2	chr7	102019971	102020171	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001360748, exon 9 of 9)	3' UTR (NM_001360748, exon 9 of 9)	-1916.0	NM_010531	16068.0	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-151722433-2	chr1	151722333	151722533	+	845.3333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32294.0	NR_151474	102640772.0		NR_151473	ENSMUSG00000100594	2810414N06Rik	-	RIKEN cDNA 2810414N06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-46875837-4	chr11	46875751	46875951	+	948.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	65052.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-10899881-4	chr8	10899797	10899997	+	996.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_102285)	promoter-TSS (NR_102285)	-25.0	NR_102285	71624.0	Mm.139075	NR_102285	ENSMUSG00000109089	4833411C07Rik	-	RIKEN cDNA 4833411C07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-63391459-4	chr4	63391354	63391554	+	983.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045514, intron 4 of 21)	intron (NM_001045514, intron 4 of 21)	6786.0	NM_001305432	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4680331-2	chr16	4680231	4680431	+	853.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030205)	promoter-TSS (NM_030205)	-611.0	NM_030205	78885.0	Mm.325512	NM_030205	ENSMUSG00000039637	Coro7	0610011B16Rik|AW048373|AW556392	coronin 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-70913214-2	chr12	70913114	70913314	+	573.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24643.0	NM_019785	56444.0	Mm.29317	NM_019785	ENSMUSG00000021076	Actr10	Actr11|Arp11	ARP10 actin-related protein 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117764805-4	chr10	117764715	117764915	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134010, intron 19 of 27)	intron (NM_134010, intron 19 of 27)	-18457.0	NM_029875	215436.0	Mm.256753	NM_029875	ENSMUSG00000060181	Slc35e3	9330166G04Rik|AI481200	solute carrier family 35, member E3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-161041099-2	chr2	161040999	161041199	+	712.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_126509, intron 4 of 35)	intron (NR_126509, intron 4 of 35)	67987.0	NM_173368	71389.0	Mm.122738	NM_173368	ENSMUSG00000057133	Chd6	5430439G14Rik|6330406J24Rik|CHD-6	chromodomain helicase DNA binding protein 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-99929399-4	chr10	99929312	99929512	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M3|LINE|L1	-86409.0	NM_001347156	17311.0	Mm.45124	NM_013598	ENSMUSG00000019966	Kitl	Clo|Con|Gb|Kitlg|Mgf|SCF|SF|SLF|Sl|blz|contrasted	kit ligand	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-67469447-1	chr7	67469347	67469547	+	893.0	f1_balb.idr	Intergenic	MTC|LTR|ERVL-MaLR	-96589.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	0.771195577060561	0.641282613071986	1.13659218966474	0.807821664932068	0.776711279712856	1.44613995464836	0.835527817560602	1.51276743889563	1.5841214221885	0.27031369079497	0.773417332874928
Merged-chr17-8920557-3	chr17	8920467	8920667	+	828.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347321, intron 3 of 21)	intron (NM_001347321, intron 3 of 21)	-67766.0	NM_025851	66931.0	Mm.67591	NM_025851	ENSMUSG00000023873	1700010I14Rik	-	RIKEN cDNA 1700010I14 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120686269-4	chr8	120686160	120686360	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17940.0	NM_001293559	12857.0	Mm.386758	NM_009941	ENSMUSG00000031818	Cox4i1	AL024441|COX|COX IV-1|COXIV|Cox4|Cox4a|IV-1	cytochrome c oxidase subunit 4I1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-143151386-2	chr4	143151286	143151486	+	601.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001256380, intron 6 of 7)	intron (NM_001256380, intron 6 of 7)	-15224.0	NR_105988	102465618.0		NR_105988	ENSMUSG00000106597	Mir7021	mmu-mir-7021	microRNA 7021	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126799816-2	chr7	126799698	126799898	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_007438)	promoter-TSS (NM_007438)	-544.0	NM_007438	11674.0	Mm.275831	NM_007438	ENSMUSG00000030695	Aldoa	Aldo-1|Aldo1	aldolase A, fructose-bisphosphate	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-54981145-4	chr12	54981056	54981256	+	936.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013815, intron 2 of 26)	MIRb|SINE|MIR	5180.0	NM_013815	217578.0	Mm.479583	NM_013815	ENSMUSG00000035021	Baz1a	Acf1|B930060C03|BC065123|Gtl5|Wcrf180|cbp146	bromodomain adjacent to zinc finger domain 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-108850773-4	chr3	108850676	108850876	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10274.0	NM_011504	20912.0	Mm.316894	NM_011504	ENSMUSG00000027882	Stxbp3	Munc-18c|Stxbp3a|Sxtbp3|Unc18-3	syntaxin binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-66803902-3	chr15	66803798	66803998	+	726.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029841, intron 1 of 7)	intron (NM_001029841, intron 1 of 7)	27931.0	NM_001029841	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-4652121-4	chr2	4652008	4652208	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356451)	promoter-TSS (NM_001356451)	27.0	NM_026045	67229.0	Mm.38529	NM_026045	ENSMUSG00000039449	Prpf18	2810441A10Rik	pre-mRNA processing factor 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124756179-4	chr6	124756113	124756313	+	868.744446	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007881, intron 1 of 9)	G-rich|Low_complexity|Low_complexity	274.0	NM_007881	13498.0	Mm.333380	NM_007881	ENSMUSG00000004263	Atn1	Atr1|Drpla|atrophin-1	atrophin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-120010904-2	chr2	120010804	120011004	+	733.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355293, intron 3 of 30)	intron (NM_001355293, intron 3 of 30)	-6613.0	NR_106125	102466842.0		NR_106125	ENSMUSG00000098632	Mir7665	Gm27478|mmu-mir-7665	microRNA 7665	ncRNA	0.91700655504358	0.436798665720593	0.428210483262374	0.421539413272955	0.705542505920134	0.648552968619811	1.33655400300058	0.882474554390023	1.97116589741906	0.247201143928064	1
Merged-chr1-144005836-4	chr1	144005715	144005915	+	979.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1666.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-98955848-3	chr13	98955800	98956000	+	815.583313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	28665.0	NM_027064	69382.0	Mm.45466	NM_027064	ENSMUSG00000045022	1700024P04Rik	H2bl1|Subh2bv	RIKEN cDNA 1700024P04 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-115995691-3	chr6	115995592	115995792	+	929.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026376)	promoter-TSS (NM_026376)	-687.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-45385069-2	chr5	45384973	45385173	+	664.5	f0_balb.idr|f1_balb.idr	intron (NR_131933, intron 1 of 5)	intron (NR_131933, intron 1 of 5)	39327.0	NR_131933	52401.0	Mm.33854	NR_131933	ENSMUSG00000029092	D5Ertd615e	4930435H24Rik	DNA segment, Chr 5, ERATO Doi 615, expressed	ncRNA	1.74870104340845	2.50672923425374	1.3965980133455	2.34384315874657	3.49911162011244	2.37334447053219	3.41593195362218	2.70467987502577	2.02517510427597	0.0142057499281345	0.139476749294401
Merged-chr14-46158616-1	chr14	46158516	46158716	+	676.0	f1_c57bl6.idr	Intergenic	Intergenic	74589.0	NR_002875	218963.0	Mm.282093	NR_002875		Gm1821	-	ubiquitin pseudogene	pseudo	-2.05752322593321	-2.15521190974092	-2.16307242109104	-2.16952927915413	-2.17938029103484	-2.15350850414045	-2.16129297361887	-2.16837350464794	-0.683654500252594	0.846597994014493	1
Merged-chr11-29779191-2	chr11	29779091	29779291	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146016, intron 26 of 41)	B1F2|SINE|Alu	46477.0	NM_176829	216622.0	Mm.443260	NM_176829	ENSMUSG00000078157	4931440F15Rik	Fem1ab	RIKEN cDNA 4931440F15 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-19895672-3	chr3	19895525	19895725	+	793.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_027985, exon 1 of 1)	non-coding (NR_027985, exon 1 of 1)	754.0	NR_027985	70808.0	Mm.427103	NR_027985	ENSMUSG00000048106	4632415L05Rik	AI662792	RRS1 ribosome biogenesis regulator homolog pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-63131525-2	chr9	63131425	63131625	+	737.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15455.0	NM_172446	207667.0	Mm.36349	NM_172446	ENSMUSG00000022245	Skor1	AV273001|C230094B15Rik|Corl1|Lbxcor1	SKI family transcriptional corepressor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-72107287-4	chr1	72107187	72107387	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-102092.0	NR_040454	71134.0	Mm.370574	NR_040454	ENSMUSG00000101848	4933417E11Rik	-	RIKEN cDNA 4933417E11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132474800-4	chr4	132474696	132474896	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10875.0	NM_026039	67219.0	Mm.45929	NM_026039	ENSMUSG00000066042	Med18	2810046C01Rik	mediator complex subunit 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-46613395-4	chr18	46613298	46613498	+	993.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15694.0	NM_010120	13664.0	Mm.262037	NM_010120	ENSMUSG00000057561	Eif1a	C76390|Ef1a|Eftu|Eif4c|eIF-1A|eIF-4C	eukaryotic translation initiation factor 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-50147275-2	chr11	50147175	50147375	+	687.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029745, intron 5 of 20)	intron (NM_029745, intron 5 of 20)	15915.0	NM_029745	76795.0	Mm.290975	NM_029745	ENSMUSG00000036644	Tbc1d9b	-	TBC1 domain family, member 9B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-4548032-2	chr3	4547932	4548132	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17B|LTR|ERVK	-250676.0	NR_045272	100503859.0	Mm.75172	NR_045272	ENSMUSG00000098659	1110015O18Rik	-	RIKEN cDNA 1110015O18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-68548598-4	chr11	68548500	68548700	+	930.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004435, intron 18 of 19)	intron (NM_001004435, intron 18 of 19)	-7586.0	NM_146004	215723.0	Mm.131205	NM_146004	ENSMUSG00000048329	Mfsd6l	-	major facilitator superfamily domain containing 6-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-66063448-2	chr1	66063348	66063548	+	602.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-111881.0	NM_008632	17756.0	Mm.256966	NM_008632	ENSMUSG00000015222	Map2	G1-397-34|MAP-2|Mtap-2|Mtap2|repro4	microtubule-associated protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166978572-2	chr2	166978472	166978672	+	940.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001109905, intron 1 of 11)	B1_Mus2|SINE|Alu	-13855.0	NR_111895	20853.0	Mm.73276	NM_011490	ENSMUSG00000039536	Stau1	5830401L18Rik|AW549911|C85792|Stau	staufen double-stranded RNA binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69079791-2	chr11	69079691	69079891	+	572.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6365.0	NR_028566	100216530.0	Mm.453052	NR_028566	ENSMUSG00000064899	Snord118	MBI-34	small nucleolar RNA, C/D box 118	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-139644144-1	chr4	139644044	139644244	+	608.0	f1_c57bl6.idr	TTS (NR_105987)	TTS (NR_105987)	102.0	NR_105987	102465617.0		NR_105987	ENSMUSG00000098569	Mir7020	Gm27759|mmu-mir-7020	microRNA 7020	ncRNA	2.3627743327308	1.01619036216345	2.10796227444703	2.36993314464543	1.62353710812375	1.02144964760585	1.24881531904277	1.21340200744402	-2.34226364259092	0.0505023450614372	0.327764408247633
Merged-chr5-92467209-4	chr5	92467080	92467280	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007644, intron 2 of 11)	intron (NM_007644, intron 2 of 11)	8623.0	NR_105843	102466159.0		NR_105843	ENSMUSG00000099160	Mir6415	Gm27714|mmu-mir-6415	microRNA 6415	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53156617-2	chr4	53156515	53156715	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 1 of 49)	intron (NM_013454, intron 1 of 49)	3280.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0.528659146520496	0.436622311448332	0.109600335105921	0.381046279406647	0.346310403478524	0.1153617229166	0.110634034771488	0.385309070449967	-1.02409215604512	0.598435883814416	1
Merged-chr3-65002784-1	chr3	65002684	65002884	+	543.0	f0_balb.idr	intron (NM_001357358, intron 1 of 13)	intron (NM_001357358, intron 1 of 13)	53572.0	NM_001357358	16497.0	Mm.316402	NM_010597	ENSMUSG00000027827	Kcnab1	Akr8a8|Kvbeta1.1|mKv(beta)1	potassium voltage-gated channel, shaker-related subfamily, beta member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-179960030-3	chr1	179959856	179960056	+	809.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346805)	promoter-TSS (NM_001346805)	-804.0	NM_001359541	226751.0	Mm.259655	NM_001033285	ENSMUSG00000026490	Cdc42bpa	A930014J19Rik|DMPK-like	CDC42 binding protein kinase alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-93943214-3	chr2	93943107	93943307	+	733.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13893.0	NM_001145034	620695.0	Mm.482106	NM_001145034	ENSMUSG00000087006	Gm13889	Ag2	predicted gene 13889	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134034443-2	chr6	134034314	134034514	+	945.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1286.0	NM_001303102	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	1.05663421184089	1.91462872396659	3.2676065817086	1.11006976347558	2.10068294929746	1.72812064313987	2.02508959113248	2.84220171151807	0.0623492857261442	0.95481534105689	0.998431161219273
Merged-chr7-97108310-3	chr7	97108205	97108405	+	922.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162477, intron 1 of 9)	intron (NM_001162477, intron 1 of 9)	26554.0	NM_010248	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	2.05742972877805	2.56615010141041	3.0110993156207	1.65001295736424	2.49989029790425	2.15954965695754	2.49959147286618	2.62512860359812	0.0606812550002657	0.942396908812854	0.998431161219273
Merged-chr11-6169420-4	chr11	6169299	6169499	+	914.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173748, intron 2 of 5)	intron (NM_173748, intron 2 of 5)	3932.0	NR_029471	100042173.0	Mm.441799	NR_029471		Rps15a-ps6	Gm11968	ribosomal protein S15A, pseudogene 6	pseudo	2.47089577125389	2.29433481801784	2.47150068332419	2.15736977907196	2.72703169459109	2.45111537246269	1.4395464865581	2.93355417816019	0.342525835619864	0.691340549478296	0.996871606651317
Merged-chr13-23556591-2	chr13	23556491	23556691	+	720.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_145713)	TTS (NM_145713)	1559.0	NM_145713	14957.0	Mm.247046	NM_145713	ENSMUSG00000052565	Hist1h1d	H1.3|H1D|H1f3|H1s-4	histone cluster 1, H1d	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-150981562-4	chr2	150981470	150981670	+	950.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207204, intron 1 of 23)	intron (NM_207204, intron 1 of 23)	27828.0	NM_207204	78177.0	Mm.120911	NM_207204	ENSMUSG00000068115	Ninl	4930519N13Rik|Gm1004|Gm1634|mKIAA0980	ninein-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-38479736-4	chr2	38479649	38479849	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Rod|LINE|L1	-31948.0	NM_021606	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-137611347-4	chr3	137611245	137611445	+	807.020813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12327.0	NM_030143	73284.0	Mm.250841	NM_030143	ENSMUSG00000046818	Ddit4l	1700037B15Rik|1700108M02Rik|REDD2|RTP801L|Smhs1	DNA-damage-inducible transcript 4-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70407699-2	chr14	70407599	70407799	+	790.583313	f1_balb.idr|f1_c57bl6.idr	intron (NM_021308, intron 10 of 22)	intron (NM_021308, intron 10 of 22)	21395.0	NM_021308	57746.0	Mm.85253	NM_021308	ENSMUSG00000033644	Piwil2	Piwil1l|mili	piwi-like RNA-mediated gene silencing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-149193761-4	chr6	149193658	149193858	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR30B_MM|LTR|ERV1	-5046.0	NM_001113424	232566.0	Mm.209147	NM_001113424	ENSMUSG00000068250	Amn1	5830467E07Rik|A230083D09|C730024G19Rik	antagonist of mitotic exit network 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-57753111-2	chr9	57753011	57753211	+	559.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007713, intron 9 of 12)	B2_Mm2|SINE|B2	12749.0	NM_007713	102414.0	Mm.25720	NM_007713	ENSMUSG00000032316	Clk3	AI256811	CDC-like kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-26375202-8	chr10	26375076	26375276	+	954.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172787)	promoter-TSS (NM_172787)	43.0	NM_172787	237339.0	Mm.338439	NM_172787	ENSMUSG00000039089	L3mbtl3	AI481284|MBT-1	L3MBTL3 histone methyl-lysine binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-45730072-2	chr17	45729972	45730172	+	655.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3772.0	NM_028164	72240.0	Mm.482897	NM_028164	ENSMUSG00000094690	1600014C23Rik	-	RIKEN cDNA 1600014C23 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-182140552-4	chr1	182140448	182140648	+	838.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15811.0	NM_012058	27058.0	Mm.273196	NM_012058	ENSMUSG00000026511	Srp9	9kDa	signal recognition particle 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-60702787-2	chr11	60702687	60702887	+	634.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001159405, exon 2 of 22)	exon (NM_001159405, exon 2 of 22)	3097.0	NM_008502	16897.0	Mm.285453	NM_008502	ENSMUSG00000020536	Llgl1	AI325176|Lgl1|Llglh|Mgl1	LLGL1 scribble cell polarity complex component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-103917348-2	chr13	103917248	103917448	+	564.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001005868, intron 1 of 26)	intron (NM_001005868, intron 1 of 26)	3238.0	NM_001289473	59079.0	Mm.277354	NM_021563	ENSMUSG00000021709	Erbin	1700028E05Rik|Erbb2ip|mKIAA1225	Erbb2 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-30719305-1	chr14	30719205	30719405	+	805.5	f1_balb.idr	intron (NM_001166532, intron 1 of 20)	Lx3A|LINE|L1	3690.0	NM_001166532	54650.0	Mm.294662	NM_019460	ENSMUSG00000006527	Sfmbt1	4930442N21Rik|9330180L21Rik|AA536974|Sfmbt|Smr	Scm-like with four mbt domains 1	protein-coding	1.35951492449157	1.24037378605883	1.92463549902197	2.17290064423409	3.04931128352535	3.16388616646558	1.20727647987344	3.20727772111258	2.40158351663961	0.015786266571647	0.150320338354461
Merged-chr5-121850359-2	chr5	121850259	121850459	+	846.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359950, intron 1 of 2)	intron (NM_001359950, intron 1 of 2)	1362.0	NM_001359949	231717.0	Mm.12654	NM_175474	ENSMUSG00000044134	Fam109a	A230106M15Rik|AU017694|IPIP27A|Ses1	family with sequence similarity 109, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-29383578-4	chr19	29383476	29383676	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021893, intron 5 of 6)	intron (NM_021893, intron 5 of 6)	16138.0	NM_021893	60533.0	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-88334132-4	chr10	88334034	88334234	+	958.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027878, intron 4 of 6)	intron (NM_027878, intron 4 of 6)	22941.0	NM_027878	71712.0	Mm.35450	NM_027878	ENSMUSG00000020057	Dram1	1200002N14Rik|Dram	DNA-damage regulated autophagy modulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-47917727-3	chr18	47917622	47917822	+	704.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A1|LTR|ERVL-MaLR	-5119.0	NR_045404	414127.0	Mm.450768	NR_045404		G630055G22Rik	-	RIKEN cDNA G630055G22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-136123599-4	chr4	136123480	136123680	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20242.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-87466219-4	chr11	87466121	87466321	+	951.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199293, intron 2 of 30)	ORR1B1|LTR|ERVL-MaLR	38630.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-146811223-3	chr5	146811126	146811326	+	837.266663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16270.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	-1.32440223303897	-1.29339468673833	-0.717877708899544	-1.31276353204239	-1.32392690786997	-1.29109028300231	-1.30162128075409	-1.31119997543009	-2.49510383040271	0.470258445164311	1
Merged-chr9-44401271-2	chr9	44401171	44401371	+	710.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_106053)	TTS (NR_106053)	848.0	NR_106053	102465658.0		NR_106053	ENSMUSG00000099309	Mir7085	Gm27423|mmu-mir-7085	microRNA 7085	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-88287872-2	chr7	88287772	88287972	+	621.900024	f1_balb.idr|f1_c57bl6.idr	intron (NM_001311790, intron 3 of 3)	intron (NM_001311790, intron 3 of 3)	9787.0	NM_001311790	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53125626-2	chr4	53125526	53125726	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 5 of 49)	intron (NM_013454, intron 5 of 49)	34269.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-59943017-2	chr10	59942917	59943117	+	725.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8753.0	NM_029083	74747.0	Mm.21697	NM_029083	ENSMUSG00000020108	Ddit4	5830413E08Rik|AA415483|REDD1|Rtp801|dig2	DNA-damage-inducible transcript 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-43785198-4	chr13	43785108	43785308	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289915)	promoter-TSS (NM_001289915)	96.0	NM_001289915	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-44923327-2	chr2	44923227	44923427	+	781.375	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61705.0	NM_172662	227835.0	Mm.314312	NM_172662	ENSMUSG00000036890	Gtdc1	E330008O22Rik	glycosyltransferase-like domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-25592013-4	chr2	25591923	25592123	+	982.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024616, intron 7 of 14)	intron (NM_001024616, intron 7 of 14)	-11924.0	NM_001005424	381353.0	Mm.379511	NM_001005424	ENSMUSG00000029419	Gm996	Ajm1	predicted gene 996	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-40333814-3	chr9	40333689	40333889	+	886.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357617, intron 2 of 20)	intron (NM_001357617, intron 2 of 20)	317.0	NR_040728	73558.0	Mm.398307	NR_040728		1700110K17Rik	-	RIKEN cDNA 1700110K17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27858933-2	chr17	27858833	27859033	+	746.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080769, intron 1 of 20)	intron (NM_001080769, intron 1 of 20)	2426.0	NM_001080769	224648.0	Mm.291291	NM_001080769	ENSMUSG00000039512	Uhrf1bp1	1110020K19Rik|AA408674|F830021D11Rik|mKIAA4127	UHRF1 (ICBP90) binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-30599129-2	chr12	30599029	30599229	+	599.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14686.0	NM_172049	211986.0	Mm.34035	NM_172049	ENSMUSG00000043061	Tmem18	BC024093	transmembrane protein 18	protein-coding	0.611702699230686	0.885603541190151	1.66852708015866	0.452219297123684	1.01001402678262	0.474407015898278	0.854155056698818	0.453740321004667	-1.29241901162747	0.42985882170984	0.904095509792853
Merged-chr14-31657018-2	chr14	31656932	31657132	+	660.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025295, intron 1 of 3)	intron (NM_025295, intron 1 of 3)	15975.0	NM_025295	26363.0	Mm.282679	NM_025295	ENSMUSG00000021900	Btd	-	biotinidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3872663-2	chr12	3872563	3872763	+	992.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007872, intron 4 of 22)	intron (NM_007872, intron 4 of 22)	-10419.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-123353675-2	chr4	123353575	123353775	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199137, intron 91 of 92)	intron (NM_001199137, intron 91 of 92)	-10423.0	NM_007558	12163.0	Mm.439749	NM_007558	ENSMUSG00000032726	Bmp8a	Bmp7r1|OP-2|OP2	bone morphogenetic protein 8a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-142065572-3	chr4	142065472	142065672	+	668.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145402, intron 1 of 2)	MIRc|SINE|MIR	-18726.0	NR_027137	100038693.0	Mm.402714	NR_027137	ENSMUSG00000073728	Tmem51os1	Gm10565|Tmem51as1	Tmem51 opposite strand 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99072743-1	chr7	99072643	99072843	+	660.0	f1_c57bl6.idr	intron (NM_178635, intron 5 of 14)	intron (NM_178635, intron 5 of 14)	68401.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	0.462676905049448	0.596971537973986	0.0981508951371468	0.811796340853597	0.234256417610493	0.105344031787948	0.0994461792546584	0.0944097370151487	-3.24770136467777	0.112239943380855	1
Merged-chr9-48558887-4	chr9	48558800	48559000	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46223.0	NM_010924	18113.0	Mm.8362	NM_010924	ENSMUSG00000032271	Nnmt	-	nicotinamide N-methyltransferase	protein-coding	3.25898245840943	3.19600683919457	4.28837557641574	2.98348043465385	3.42996562598571	1.666011556093	4.71999810161361	2.06614502707894	-0.0137012435145506	0.991046123408744	0.998431161219273
Merged-chr11-121706622-4	chr11	121706527	121706727	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144797, intron 1 of 3)	intron (NM_144797, intron 1 of 3)	4200.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-38054475-3	chr19	38054395	38054595	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr	promoter-TSS (NM_001360663)	promoter-TSS (NM_001360663)	-489.0	NM_028293	74107.0	Mm.9916	NM_028293	ENSMUSG00000024989	Cep55	1200008O12Rik|2700032M20Rik	centrosomal protein 55	protein-coding	6.03415089807212	5.82932458587177	5.83461207088631	5.18293546398707	6.22577921563112	5.40952918207134	6.1015745328507	5.50284278697709	0.118312358696545	0.679642898077536	0.995323723386884
Merged-chr14-67211919-4	chr14	67211823	67212023	+	952.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21369.0	NM_010095	13592.0	Mm.319947	NM_010095	ENSMUSG00000022053	Ebf2	D14Ggc1e|EBF-2|Mmot1|O/E-3|OE-3	early B cell factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-50014739-4	chr18	50014635	50014835	+	961.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177759, intron 1 of 1)	intron (NM_001177759, intron 1 of 1)	-16249.0	NM_001360935	106869.0	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	2.16066631340307	2.99962020906376	1.53659812364567	1.8791019509511	2.17964692008262	3.02216605559754	1.54794008860635	1.88911393861346	0.0385903665374535	0.967623070029436	0.998431161219273
Merged-chr16-18813770-2	chr16	18813670	18813870	+	628.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011672, intron 1 of 11)	intron (NM_011672, intron 1 of 11)	1476.0	NM_011672	22230.0	Mm.237594	NM_011672	ENSMUSG00000005262	Ufd1	Ufd1l	ubiquitin recognition factor in ER-associated degradation 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99045086-4	chr15	99045005	99045205	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1L|LTR|ERVL-MaLR	-10069.0	NM_001163588	19132.0	Mm.2477	NM_013639	ENSMUSG00000023484	Prph	Prph1	peripherin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-14269379-4	chr2	14269280	14269480	+	778.424988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008625, intron 7 of 29)	intron (NM_008625, intron 7 of 29)	8377.0	NR_030609	100124488.0		NR_030609	ENSMUSG00000077897	Mir511	Mirn511|mir-511|mmu-mir-511	microRNA 511	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-92630362-2	chr7	92630270	92630470	+	682.25	f0_balb.idr|f1_balb.idr	intron (NM_028665, intron 2 of 11)	intron (NM_028665, intron 2 of 11)	6772.0	NM_028665	73845.0	Mm.73248	NM_028665	ENSMUSG00000041343	Ankrd42	4931426M20|4933417L02Rik|Ikbn	ankyrin repeat domain 42	protein-coding	0.733975593062734	0.994696446523193	1.40600374508503	1.23972443350313	1.78078824538187	1.34120425880097	0.763949321596146	1.10803496004346	0.767073640892084	0.583310719067089	0.966599221005409
Merged-chr2-166327164-4	chr2	166327078	166327278	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	53270.0	NR_033467	670775.0	Mm.384326	NR_033467	ENSMUSG00000084840	Gm11468	-	predicted gene 11468	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-77980839-3	chr11	77980731	77980931	+	987.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1985.0	NM_174852	268448.0	Mm.274329	NM_174852	ENSMUSG00000037791	Phf12	2410142K10Rik|F630045O13|PF1|mKIAA1523	PHD finger protein 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-147010366-4	chr2	147010252	147010452	+	695.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-2647.0	NM_001356403	24128.0	Mm.3065	NM_011917	ENSMUSG00000027433	Xrn2	-	5'-3' exoribonuclease 2	protein-coding	2.37713257135611	2.39717261360026	2.45586706453086	2.50736961959131	2.15097571481293	2.80877277448981	3.58202879577159	2.26139485097546	0.809657532847134	0.297661090164349	0.800257675359925
Merged-chr19-56704534-2	chr19	56704500	56704700	+	926.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-17772.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	1.49398446532443	0.820726055804158	1.1686217954587	1.67188281859412	1.32221669601149	0.823440263382892	1.01097550191287	1.39543710795289	-0.702518612751259	0.607161273647147	0.974576632476413
Merged-chr12-70783065-3	chr12	70782967	70783167	+	659.783325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42447.0	NM_028127	319710.0	Mm.2962	NM_028127	ENSMUSG00000048285	Frmd6	2610019M19Rik|4930488L10Rik|AW212977|Willin	FERM domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-34744377-3	chr8	34744283	34744483	+	955.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63227.0	NM_176933	319520.0	Mm.170276	NM_176933	ENSMUSG00000031530	Dusp4	2700078F24Rik|AI844617|BB104621|E130306H24Rik|MKP2	dual specificity phosphatase 4	protein-coding	2.44197858377492	2.85946975758269	3.20651243832965	2.78645006659091	2.46252223077835	2.88047192844889	3.23080731441254	1.77811200481018	-0.290302445421903	0.700247507709381	0.998431161219273
Merged-chr13-60358901-4	chr13	60358799	60358999	+	992.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	153428.0	NR_036449	100503759.0	Mm.38101	NM_177810	ENSMUSG00000050765	Gm5084	A030007L22|EG328264	predicted gene 5084	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-73967851-3	chr12	73967753	73967953	+	811.033325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178392, intron 1 of 9)	intron (NM_178392, intron 1 of 9)	3323.0	NM_178392	75627.0	Mm.25937	NM_178392	ENSMUSG00000021113	Snapc1	2700033G17Rik|AU015787	small nuclear RNA activating complex, polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119052792-2	chr11	119052692	119052892	+	988.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11879.0	NM_013926	30951.0	Mm.99953	NM_013926	ENSMUSG00000025578	Cbx8	Pc3	chromobox 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-108307906-2	chr9	108307806	108308006	+	870.5625	f1_balb.idr|f1_c57bl6.idr	intron (NM_001313961, intron 1 of 5)	intron (NM_001313961, intron 1 of 5)	1109.0	NM_001313962	11848.0	Mm.757	NM_016802	ENSMUSG00000007815	Rhoa	Arha|Arha1|Arha2	ras homolog family member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-37438816-2	chr6	37438716	37438916	+	581.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178661, intron 1 of 11)	B4|SINE|B4	3332.0	NM_178661	208647.0	Mm.169929	NM_178661	ENSMUSG00000038648	Creb3l2	BBF2H7|C530025K05Rik|SCIRR69	cAMP responsive element binding protein 3-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-37050490-10	chr17	37050452	37050652	+	948.033325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019439, intron 5 of 22)	intron (NM_019439, intron 5 of 22)	4586.0	NM_019439	54393.0	Mm.32191	NM_019439	ENSMUSG00000024462	Gabbr1	GABAB1|GABAbR1|bM573K1.1	gamma-aminobutyric acid (GABA) B receptor, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-44138353-4	chr16	44138253	44138453	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007508, intron 1 of 14)	intron (NM_007508, intron 1 of 14)	906.0	NM_001358203	11964.0	Mm.217787	NM_007508	ENSMUSG00000052459	Atp6v1a	AI647066|Atp6a1|Atp6a2|Atp6v1a1|VA68|VPP2	ATPase, H+ transporting, lysosomal V1 subunit A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91540656-2	chr16	91540604	91540804	+	849.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6390.0	NM_008338	15980.0	Mm.249364	NM_008338	ENSMUSG00000022965	Ifngr2	Ifgr2|Ifgt	interferon gamma receptor 2	protein-coding	-0.0888890726369697	-0.0690746238726413	0.545247773152938	-0.0805174118532271	-0.0876382508943493	0.83034792358064	0.125974191204842	-0.0796413641797758	0.994137225473218	0.657981678525768	1
Merged-chr2-122569300-2	chr2	122569200	122569400	+	627.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	41977.0	NM_025961	67092.0	Mm.29975	NM_025961	ENSMUSG00000027199	Gatm	1810003P21Rik|AI314789|AT	glycine amidinotransferase (L-arginine:glycine amidinotransferase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-92092250-4	chr6	92092171	92092371	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347342)	promoter-TSS (NM_001347342)	-162.0	NM_001347342	22026.0	Mm.87062	NM_011630	ENSMUSG00000005893	Nr2c2	TAK1|Tr4|mKIAA4145	nuclear receptor subfamily 2, group C, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-12977194-1	chr7	12977094	12977294	+	674.0	f1_c57bl6.idr	promoter-TSS (NM_001168561)	promoter-TSS (NM_001168561)	-654.0	NM_175558	269870.0	Mm.62083	NM_175558	ENSMUSG00000033961	Zfp446	A630035I11Rik|A930031C22|AA120513|AV306632	zinc finger protein 446	protein-coding	0.59720918527348	0.148344387485128	1.54943619031956	0.129901251666322	0.607790192231821	0.150642937299107	0.140314388996379	0.131329101403609	-2.51993208079511	0.206435007585603	1
Merged-chr13-3782707-4	chr13	3782596	3782796	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21622.0	NM_027416	70405.0	Mm.20079	NM_027416	ENSMUSG00000063130	Calml3	2310068O22Rik|AI326174	calmodulin-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-134560534-6	chr1	134560385	134560585	+	912.744446	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_152895, exon 1 of 27)	exon (NM_152895, exon 1 of 27)	307.0	NM_152895	75605.0	Mm.28995	NM_152895	ENSMUSG00000042207	Kdm5b	2010009J12Rik|2210016I17Rik|AW556288|D1Ertd202e|Jarid1b|PLU-1|PUT1|Plu1|RBBP2H1A|Rb-Bp2|mKIAA4034	lysine (K)-specific demethylase 5B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-86208837-2	chr15	86208737	86208937	+	953.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-5622.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-77196967-4	chr11	77196873	77197073	+	947.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-8005.0	NM_176965	319634.0	Mm.108786	NM_176965	ENSMUSG00000050944	Efcab5	4930563A03Rik	EF-hand calcium binding domain 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-67146795-2	chr14	67146695	67146895	+	662.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74324.0	NM_001205188	71978.0	Mm.273997	NM_028032	ENSMUSG00000022052	Ppp2r2a	2410004D02Rik|mKIAA1541	protein phosphatase 2, regulatory subunit B, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-55949181-2	chr16	55949081	55949281	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14333.0	NM_001159365	74201.0	Mm.178427	NM_028815	ENSMUSG00000022604	Cep97	2810403B08Rik|4932439K18Rik|AA437768|E130116N02Rik|Lrriq2	centrosomal protein 97	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-78490803-2	chr11	78490703	78490903	+	887.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_172795, exon 2 of 9)	exon (NM_172795, exon 2 of 9)	6951.0	NM_001168521	237868.0	Mm.210332	NM_172795	ENSMUSG00000050132	Sarm1	A830091I15Rik|C78606|MyD885|Sarm	sterile alpha and HEAT/Armadillo motif containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-81907772-3	chr12	81907651	81907851	+	834.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018814, intron 3 of 35)	intron (NM_018814, intron 3 of 35)	47721.0	NM_018814	54604.0	Mm.86584	NM_018814	ENSMUSG00000021140	Pcnx	2900024E21Rik|3526401J03Rik|AF096286|AI327143|AI413187|Pcnx1|Pcnxl1	pecanex homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-95883063-4	chr13	95882980	95883180	+	798.025024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027711, intron 1 of 35)	intron (NM_027711, intron 1 of 35)	8842.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	3.12294611112782	3.97010066007955	3.63848772471352	2.99128488470144	3.64562102925009	3.62476026368824	4.10281252577035	2.88682936148082	0.226842963493769	0.688740122335732	0.996533206832645
Merged-chr9-21040699-3	chr9	21040601	21040801	+	781.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A3|LTR|ERVL-MaLR	-8373.0	NR_035438	100316681.0		NR_035438	ENSMUSG00000084663	Mir1900	Mirn1900|mmu-mir-1900	microRNA 1900	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-22748186-4	chr2	22748068	22748268	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26159.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-7347353-4	chr9	7347228	7347428	+	969.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001320076)	promoter-TSS (NM_001320076)	-46.0	NM_001320076	17381.0	Mm.2055	NM_008605	ENSMUSG00000049723	Mmp12	AV378681|MME|Mmel	matrix metallopeptidase 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-57499595-4	chr16	57499473	57499673	+	794.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	-49669.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70151273-4	chr11	70151169	70151369	+	762.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-15354.0	NM_001204252	17312.0	Mm.252405	NM_010796	ENSMUSG00000000318	Clec10a	CD301a|M-ASGP-BP-1|Mgl|Mgl1	C-type lectin domain family 10, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-103165642-4	chr15	103165557	103165757	+	927.9833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2373.0	NM_027885	71726.0	Mm.254820	NM_027885	ENSMUSG00000036061	Smug1	1200013B09Rik|A930006H09Rik|C85220	single-strand selective monofunctional uracil DNA glycosylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-25142547-2	chr15	25142447	25142647	+	745.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	271217.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101386104-4	chr7	101386055	101386255	+	920.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027180, exon 2 of 30)	exon (NM_027180, exon 2 of 30)	629.0	NM_027180	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	0.634318614875604	0.501183104525708	0.491139319727093	1.51914459648298	1.01411465035686	1.05709122289298	0.493364857261762	0.831276024471149	-0.0864368156611307	0.958022998325574	0.998431161219273
Merged-chr11-54859501-2	chr11	54859401	54859601	+	717.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_029327, intron 1 of 4)	B3|SINE|B2	1090.0	NM_029327	75530.0	Mm.83578	NM_029327	ENSMUSG00000020268	Lyrm7	1700024C24Rik|9330147L21Rik	LYR motif containing 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-59760746-4	chr9	59760663	59760863	+	943.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173018, intron 1 of 43)	intron (NM_173018, intron 1 of 43)	9589.0	NM_173018	270163.0	Mm.249545	NM_173018	ENSMUSG00000039585	Myo9a	4732465J09Rik|C130068I12Rik|C230003M11	myosin IXa	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105362095-4	chr8	105361958	105362158	+	871.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081332, intron 12 of 15)	intron (NM_001081332, intron 12 of 15)	-13323.0	NM_001081333	102075.0	Mm.32034	NM_175321	ENSMUSG00000014782	Plekhg4	4931414L13Rik|AI448583|mFLJ00068	pleckstrin homology domain containing, family G (with RhoGef domain) member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-120899944-2	chr6	120899844	120900044	+	833.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007544, intron 3 of 5)	intron (NM_007544, intron 3 of 5)	16880.0	NM_007544	12122.0	Mm.235081	NM_007544	ENSMUSG00000004446	Bid	2700049M22Rik|AI875481|AU022477	BH3 interacting domain death agonist	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150606574-2	chr4	150606474	150606674	+	559.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 12 of 22)	intron (NM_001085492, intron 12 of 22)	45600.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-15986766-1	chr16	15986666	15986866	+	682.0	f0_balb.idr	intron (NM_001355731, intron 7 of 18)	intron (NM_001355731, intron 7 of 18)	99480.0	NM_007679	12609.0	Mm.347407	NM_007679	ENSMUSG00000071637	Cebpd	c/EBPdelta	CCAAT/enhancer binding protein (C/EBP), delta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-124579470-4	chr2	124579394	124579594	+	944.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290997, intron 5 of 20)	intron (NM_001290997, intron 5 of 20)	-30802.0	NM_199238	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-108788255-2	chr3	108788155	108788355	+	826.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48597.0	NM_177859	329738.0	Mm.72322	NM_177859	ENSMUSG00000049565	Aknad1	4921525H12Rik	AKNA domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-61138606-1	chr6	61138506	61138706	+	672.0	f0_balb.idr	Intergenic	Intergenic	-41719.0	NM_001164316	232035.0	Mm.150324	NM_183310	ENSMUSG00000039578	Ccser1	6230405M12Rik|C130092O11Rik|Fam190a	coiled-coil serine rich 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-61655912-2	chr2	61655812	61656012	+	700.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55782.0	NM_021526	59029.0	Mm.218198	NM_021526	ENSMUSG00000026914	Psmd14	2610312C03Rik|3200001M20Rik|AA986732|Pad1|Poh1|rpm11	proteasome (prosome, macropain) 26S subunit, non-ATPase, 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-71873129-4	chr2	71872962	71873162	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172665)	promoter-TSS (NM_172665)	-162.0	NM_172665	228026.0	Mm.34411	NM_172665	ENSMUSG00000006494	Pdk1	B830012B01|D530020C15Rik	pyruvate dehydrogenase kinase, isoenzyme 1	protein-coding	6.41172759809974	6.56180563813333	6.78239553838224	6.87594649743112	6.0383727834616	6.16605898987779	6.36396711470596	6.63003708538858	-0.377490135923964	0.0756310868260512	0.416758318924815
Merged-chr9-119402025-4	chr9	119401917	119402117	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001313757)	promoter-TSS (NM_001313757)	-161.0	NM_007397	11481.0	Mm.8940	NM_007397	ENSMUSG00000061393	Acvr2b	4930516B21Rik|ActRIIB	activin receptor IIB	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-30034216-2	chr16	30034116	30034316	+	649.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045878, intron 2 of 3)	intron (NR_045878, intron 2 of 3)	5263.0	NR_045878	71528.0	Mm.297640	NR_045878		9030404E10Rik	-	RIKEN cDNA 9030404E10 gene	ncRNA	-0.451765696890299	-0.102593472682802	-0.582148418675996	-0.174872432448437	-0.588313463418339	-0.578066125517197	-0.581415087676792	-0.584261991694765	-3.27172842410307	0.210061078211617	1
Merged-chr13-58067927-4	chr13	58067817	58068017	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195075, intron 6 of 16)	MIRc|SINE|MIR	34511.0	NM_001195075	100503085.0	Mm.379256	NM_001195075	ENSMUSG00000014164	Klhl3	7530408C15Rik|AI430941|EG627648	kelch-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-122549725-1	chr10	122549625	122549825	+	673.0	f1_balb.idr	Intergenic	L1_Rod|LINE|L1	20166.0	NR_040616	319272.0	Mm.411763	NR_040616	ENSMUSG00000112095	A130077B15Rik	-	RIKEN cDNA A130077B15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-37970163-4	chr2	37970106	37970306	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146122, intron 11 of 21)	intron (NM_146122, intron 11 of 21)	193957.0	NM_001163566	241324.0	Mm.392369	NM_001163566	ENSMUSG00000035403	Crb2	5930402A21|BC043114	crumbs family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-105780595-4	chr1	105780488	105780688	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009399)	promoter-TSS (NM_009399)	-135.0	NM_009399	21934.0	Mm.6251	NM_009399	ENSMUSG00000026321	Tnfrsf11a	Ly109|ODFR|OFE|Rank|TRANCE-R|mRANK	tumor necrosis factor receptor superfamily, member 11a, NFKB activator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44213693-4	chr9	44213601	44213801	+	943.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007619, intron 1 of 15)	intron (NM_007619, intron 1 of 15)	20345.0	NM_007619	12402.0	Mm.266871	NM_007619	ENSMUSG00000034342	Cbl	4732447J05Rik|Cbl-2|c-Cbl|cbl	Casitas B-lineage lymphoma	protein-coding	0.893207969644353	0.961381321103141	0.939851549273567	2.28823406327739	1.67228328321415	1.76982542009731	2.1433190105579	1.50589101829478	0.958105587861058	0.461780185655507	0.921194606787634
Merged-chr16-17804700-4	chr16	17804566	17804766	+	943.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153790, intron 8 of 10)	intron (NM_153790, intron 8 of 10)	7384.0	NM_153790	224024.0	Mm.194950	NM_153790	ENSMUSG00000012017	Scarf2	NSR1|SREC-II|SRECRP-1|Scatf1|Srec2|SrecII	scavenger receptor class F, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72636286-4	chr6	72636181	72636381	+	950.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009332, intron 4 of 11)	intron (NM_009332, intron 4 of 11)	6450.0	NR_040421	100038714.0	Mm.321330	NR_040421		Gm15401	-	predicted gene 15401	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-69992244-1	chr9	69992144	69992344	+	593.0	f0_balb.idr	intron (NM_001008238, intron 1 of 9)	intron (NM_001008238, intron 1 of 9)	2778.0	NM_001008238	12175.0	Mm.159777	NM_016787	ENSMUSG00000011958	Bnip2	5730523P12Rik|BNIP2beta|Nip21	BCL2/adenovirus E1B interacting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-120205757-4	chr7	120205641	120205841	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026458, intron 1 of 30)	L1MB5|LINE|L1	1777.0	NM_026458	67928.0	Mm.158178	NM_026458	ENSMUSG00000062017	Abca14	1700110B15Rik|4930539G24Rik	ATP-binding cassette, sub-family A (ABC1), member 14	protein-coding	2.54388240054604	1.60626031347307	1.55499933249413	2.76393313631849	2.71118399258902	2.96975621484772	1.29711687778598	2.06215855968542	0.370266151147685	0.707832312026875	0.998431161219273
Merged-chr6-31116550-4	chr6	31116452	31116652	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110471, intron 3 of 3)	MIRb|SINE|MIR	-53459.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-41021208-2	chr13	41021108	41021308	+	833.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360770, intron 4 of 4)	intron (NM_001360770, intron 4 of 4)	4958.0	NM_001360770	66154.0	Mm.30005	NM_025387	ENSMUSG00000021361	Tmem14c	1110021D01Rik|AU020193|HSPC194	transmembrane protein 14C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-15243239-2	chr3	15243139	15243339	+	570.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	89063.0	NM_001076679	751864.0	Mm.431296	NM_001076679	ENSMUSG00000078783	Gm9733	-	predicted gene 9733	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-143768174-2	chr4	143768074	143768274	+	732.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21160.0	NM_001007077	194227.0	Mm.371676	NM_001007077	ENSMUSG00000066031	Gm13023	BC084594|MGC:91194	predicted gene 13023	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-15758677-4	chr6	15758565	15758765	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175088, intron 3 of 4)	intron (NM_175088, intron 3 of 4)	38004.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-87007902-3	chr1	87007798	87007998	+	902.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001172157, intron 14 of 21)	MIR|SINE|MIR	82030.0	NM_007433	11650.0	Mm.195224	NM_007433	ENSMUSG00000026246	Alppl2	Akp5|C77216|D1Ertd816e|EAP	alkaline phosphatase, placental-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-8675645-2	chr12	8675545	8675745	+	640.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030723, intron 1 of 20)	intron (NM_030723, intron 1 of 20)	964.0	NM_030723	80913.0	Mm.341243	NM_030723	ENSMUSG00000020594	Pum2	5730503J23Rik|Pumm2	pumilio RNA-binding family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-84381738-3	chr10	84381648	84381848	+	663.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004363, intron 4 of 6)	MER44B|DNA|TcMar-Tigger	58723.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-115999379-2	chr6	115999279	115999479	+	926.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4374.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-24176932-2	chr19	24176881	24177081	+	729.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011597, intron 1 of 22)	intron (NM_011597, intron 1 of 22)	-2792.0	NM_001198985	21873.0	Mm.104744	NM_011597	ENSMUSG00000024812	Tjp2	ZO-2	tight junction protein 2	protein-coding	2.95990081085664	2.05054588583889	2.87573279131245	2.5391825681261	1.23081726015844	2.50911673873722	2.42172245740654	1.28195656444405	-1.41839240331981	0.143960557925041	0.592873721047362
Merged-chr10-80603046-7	chr10	80602932	80603132	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019575, intron 1 of 6)	CpG	150.0	NM_019575	56214.0	Mm.273170	NM_019575	ENSMUSG00000113949	Scamp4	2410022D05Rik|AI448940|AU022392|AW742369|Sc4	secretory carrier membrane protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-67242184-4	chr7	67242084	67242284	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291195, intron 8 of 10)	intron (NM_001291195, intron 8 of 10)	19568.0	NM_001191051	75099.0	Mm.121691	NM_175215	ENSMUSG00000043831	Lysmd4	4930506D23Rik	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-4915694-4	chr12	4915600	4915800	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1653.0	NM_001099628	320817.0	Mm.210966	NM_001099628	ENSMUSG00000052812	Atad2b	1110014E10Rik|BC032887|C79189|D530031C13Rik	ATPase family, AAA domain containing 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-136980523-4	chr6	136980416	136980616	+	941.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25993.0	NM_023898	78600.0	Mm.290622	NM_023898	ENSMUSG00000064330	Pde6h	A930033D18Rik|PDEgamma	phosphodiesterase 6H, cGMP-specific, cone, gamma	protein-coding	2.93643123239311	3.03340139551014	2.84194312230464	1.98317696696135	2.44987587527867	2.85505973902615	2.65111138611775	2.57129683987371	-0.251337415678886	0.731988551397957	0.998431161219273
Merged-chr1-151927562-3	chr1	151927504	151927704	+	860.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197990, intron 3 of 5)	B1_Mur1|SINE|Alu	162716.0	NM_197990	69399.0	Mm.278031	NM_197990	ENSMUSG00000032666	1700025G04Rik	2610510E02Rik|2900042O04Rik	RIKEN cDNA 1700025G04 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-65935700-2	chr5	65935600	65935800	+	693.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31424.0	NM_001081104	231252.0	Mm.140015	NM_001081104	ENSMUSG00000029205	Chrna9	2410015I05Rik|Acra9|EG666827|Gm8311	cholinergic receptor, nicotinic, alpha polypeptide 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-64278295-4	chr15	64278195	64278395	+	918.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 3 of 28)	intron (NM_001276461, intron 3 of 28)	34378.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-13607801-5	chr6	13607628	13607828	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028990, intron 1 of 4)	CpG	370.0	NR_155435	101118.0	Mm.254845	NM_028990	ENSMUSG00000029569	Tmem168	5730526F17Rik|8430437G11Rik|AI462344|AI504145	transmembrane protein 168	protein-coding	6.0042847832335	6.22713009267588	5.60031905287934	6.1570459191424	6.14615759987957	6.22332038491668	5.81696335031683	5.15137979478708	-0.137550316293909	0.616195265377151	0.977352076822579
Merged-chr14-66190503-4	chr14	66190392	66190592	+	933.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 2 of 30)	intron (NM_001162366, intron 2 of 30)	23332.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-80075571-2	chr15	80075464	80075664	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3015.0	NR_028282	100302601.0		NR_028282	ENSMUSG00000077734	Snord83b	MBII-10	small nucleolar RNA, C/D box 83B	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-120175985-1	chr6	120175885	120176085	+	720.0	f1_c57bl6.idr	intron (NM_016718, intron 1 of 3)	intron (NM_016718, intron 1 of 3)	-17838.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	1.29912824435777	0.665173487282823	0.651913161856482	1.579514060167	1.7120461567861	0.668127824678055	1.20513641836976	0.643331967633222	0.10609121403499	0.947475696199242	0.998431161219273
Merged-chr11-50430977-4	chr11	50430878	50431078	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172557, exon 1 of 18)	exon (NM_172557, exon 1 of 18)	133.0	NM_172557	216724.0	Mm.390400	NM_172557	ENSMUSG00000020375	Rufy1	3000002E04Rik|Rabip4|ZFYVE12	RUN and FYVE domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-97230352-3	chr3	97230274	97230474	+	847.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3010.0	NM_029933	77578.0	Mm.226175	NM_029933	ENSMUSG00000038256	Bcl9	2610202E01Rik|8030475K17Rik|A330041G23Rik|Gm130	B cell CLL/lymphoma 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-110485714-4	chr12	110485602	110485802	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_012023)	promoter-TSS (NM_012023)	-37.0	NM_001081457	26931.0	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34588396-2	chr17	34588296	34588496	+	710.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010929, exon 30 of 30)	3' UTR (NM_010929, exon 30 of 30)	-1410.0	NM_134116	106512.0	Mm.26584	NM_134116	ENSMUSG00000034786	Gpsm3	AA960287|AGS4	G-protein signalling modulator 3 (AGS3-like, C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-34473227-4	chr1	34473159	34473359	+	989.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011206, intron 13 of 14)	intron (NM_011206, intron 13 of 14)	13513.0	NM_011206	19253.0	Mm.361	NM_011206	ENSMUSG00000026126	Ptpn18	FLP1|HSCF|PTP-HSCF|PTP-K1|Ptpk1	protein tyrosine phosphatase, non-receptor type 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128802317-2	chr10	128802217	128802417	+	574.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_178066, exon 3 of 5)	exon (NM_178066, exon 3 of 5)	1650.0	NM_001358267	73827.0	Mm.24630	NM_178066	ENSMUSG00000047090	Tmem198b	1110012D08Rik	transmembrane protein 198b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-12794229-2	chr19	12794129	12794329	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_053009, intron 1 of 10)	intron (NM_053009, intron 1 of 10)	1894.0	NR_024093	664779.0	Mm.290924	NM_001039718	ENSMUSG00000024695	Gm44505	Zfp91-Cntf|Zfp91Cntf	predicted readthrough transcript (NMD candidate), 44505	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33178587-4	chr16	33178484	33178684	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6487.0	NM_176840	106326.0	Mm.486405	NM_176840	ENSMUSG00000022807	Osbpl11	9430097N02Rik|AI132306|AU019795|ORP-11	oxysterol binding protein-like 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-76673852-4	chr2	76673730	76673930	+	757.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010222)	promoter-TSS (NM_010222)	-732.0	NM_001355080	14231.0	Mm.24720	NM_010222	ENSMUSG00000002732	Fkbp7	23kDa|FKBP-7|FKBP23	FK506 binding protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101155257-4	chr15	101155171	101155371	+	879.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-18801.0	NM_007395	11479.0	Mm.308467	NM_007395	ENSMUSG00000000532	Acvr1b	6820432J04|ALK-4|ActR-IB|ActRIB|Acvrlk4|Alk4|SKR2	activin A receptor, type 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-78964656-2	chr11	78964556	78964756	+	573.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010708, intron 10 of 10)	intron (NM_010708, intron 10 of 10)	20268.0	NM_001159301	16859.0	Mm.341434	NM_010708	ENSMUSG00000001123	Lgals9	AA407335|AI194909|AI265545|LGALS35|Lgals5|gal-9|galectin-9	lectin, galactose binding, soluble 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-25893398-2	chr15	25893298	25893498	+	550.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001034851, intron 2 of 8)	intron (NM_001034851, intron 2 of 8)	-40154.0	NM_001277318	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-55686641-4	chr16	55686535	55686735	+	930.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	135503.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-85315769-2	chr15	85315669	85315869	+	725.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20612.0	NM_016843	54138.0	Mm.248906	NM_016843	ENSMUSG00000016541	Atxn10	AI325283|C77170|E46|Sca10|TEG-169|Tex169	ataxin 10	protein-coding	-0.520960244635533	-0.323955104192643	-0.0755617312481909	-0.516538375955419	-0.520303876914997	-0.509599992378646	-0.0665506916606169	-0.516071750452326	-0.418485913635297	0.874208731894613	1
Merged-chr11-47114204-1	chr11	47114104	47114304	+	659.0	f1_balb.idr	intron (NM_011891, intron 5 of 7)	intron (NM_011891, intron 5 of 7)	265098.0	NM_011891	24052.0	Mm.338890	NM_011891	ENSMUSG00000020354	Sgcd	35kDa|delta-SG	sarcoglycan, delta (dystrophin-associated glycoprotein)	protein-coding	-0.773269170465148	-0.536731853074065	-1.03283113491845	-1.03706869426034	-1.03996662017948	-1.01870368359699	-1.03020260335842	-1.0367099657609	-2.78541583542897	0.373634043026092	1
Merged-chr8-83573252-4	chr8	83573114	83573314	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134118, intron 5 of 12)	intron (NM_134118, intron 5 of 12)	6456.0	NM_025843	66916.0	Mm.29683	NM_025843	ENSMUSG00000033938	Ndufb7	1110002H15Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-101952685-2	chr5	101952585	101952785	+	629.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 8 of 66)	intron (NM_172882, intron 8 of 66)	117236.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-46451962-4	chr4	46451849	46452049	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130889, intron 1 of 6)	CpG	1023.0	NM_130889	67628.0	Mm.263913	NM_130889	ENSMUSG00000028333	Anp32b	2410015B15Rik|PAL31|PHAPI2a|Ssp29	acidic (leucine-rich) nuclear phosphoprotein 32 family, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-92354057-4	chr13	92353969	92354169	+	827.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010049)	promoter-TSS (NM_010049)	-714.0	NM_010049	13361.0	Mm.23695	NM_010049	ENSMUSG00000021707	Dhfr	8430436I03Rik|AA607882|AI662710|AW555094	dihydrofolate reductase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-38741588-4	chr9	38741494	38741694	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145957, intron 18 of 18)	intron (NM_001145957, intron 18 of 18)	-11202.0	NM_146787	258783.0	Mm.131149	NM_146787	ENSMUSG00000061039	Olfr920	MOR165-6	olfactory receptor 920	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-142747395-4	chr6	142747297	142747497	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9289.0	NM_009908	12764.0	Mm.3820	NM_009908	ENSMUSG00000030282	Cmas	AW208911|CMPNeu5Ac|D6Bwg0250e	cytidine monophospho-N-acetylneuraminic acid synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-76494666-4	chr11	76494567	76494767	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346670)	promoter-TSS (NM_001346670)	-172.0	NM_001346670	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-121266758-2	chr10	121266658	121266858	+	575.25	f0_balb.idr|f1_balb.idr	3' UTR (NM_029057, exon 12 of 12)	3' UTR (NM_029057, exon 12 of 12)	44638.0	NM_029057	74694.0	Mm.233833	NM_029057	ENSMUSG00000052302	Tbc1d30	4930505D03Rik|9530013E20Rik	TBC1 domain family, member 30	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-46052475-2	chr11	46052375	46052575	+	794.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-2027.0	NM_001291890	11492.0	Mm.89940	NM_009616	ENSMUSG00000011256	Adam19	AL024287|MADDAM|MTLNB|Mltnb	a disintegrin and metallopeptidase domain 19 (meltrin beta)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3934185-2	chr19	3934085	3934285	+	819.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1001.0	NM_019449	54445.0	Mm.262094	NM_019449	ENSMUSG00000036908	Unc93b1	Unc-93B1|Unc93b	unc-93 homolog B1 (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-40922510-4	chr13	40922409	40922609	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133219, intron 1 of 2)	intron (NM_133219, intron 1 of 2)	4875.0	NM_133219	14538.0	Mm.314757	NM_008105	ENSMUSG00000021360	Gcnt2	5330430K10Rik|IGnT|IGnTA|IGnTB|IGnTC	glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-22654595-2	chr8	22654495	22654695	+	847.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1158.0	NM_011130	18970.0	Mm.123211	NM_011130	ENSMUSG00000031536	Polb	A430088C08Rik	polymerase (DNA directed), beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-144891423-4	chr4	144891322	144891522	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER5A|DNA|hAT-Charlie	-1405.0	NM_001172424	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-79321148-1	chr15	79321048	79321248	+	543.0	f1_balb.idr	intron (NM_016915, intron 1 of 15)	B2_Mm2|SINE|B2	7223.0	NM_016915	53357.0	Mm.155620	NM_016915	ENSMUSG00000042632	Pla2g6	BB112799|PNPLA9|iPLA(2)beta|iPLA2|iPLA2beta	phospholipase A2, group VI	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-17295398-2	chr10	17295298	17295498	+	724.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-199616.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-45628640-4	chr16	45628549	45628749	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145389, intron 5 of 5)	MTE2a|LTR|ERVL-MaLR	18209.0	NM_001159297	14525.0	Mm.4799	NM_008099	ENSMUSG00000022659	Gcsam	Gcet|Gcet2|M17|M17-L	germinal center associated, signaling and motility	protein-coding	5.1906336073133	5.54973022969218	5.98392006038068	5.34645050073688	4.83725580564911	5.28282300632741	5.08917439723038	5.25345524033706	-0.490342248567265	0.1033656701445	0.500914100336688
Merged-chr13-47103217-2	chr13	47103117	47103317	+	767.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025900, intron 2 of 10)	B3|SINE|B2	3004.0	NM_025900	110052.0	Mm.131150	NM_025900	ENSMUSG00000021377	Dek	1810019E15Rik|D13H6S231E	DEK oncogene (DNA binding)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-25213951-4	chr12	25213777	25213977	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	84703.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	5.44523423078468	4.93891785515904	5.19944075534858	5.1354488240633	5.13901943438128	4.49854102629828	4.52781377466511	4.28055761530536	-0.642326774588058	0.0607273087397545	0.364641226661251
Merged-chr11-66906045-2	chr11	66905945	66906145	+	872.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_033539, intron 3 of 3)	intron (NR_033539, intron 3 of 3)	-5946.0	NM_178656	193003.0	Mm.440256	NM_178656	ENSMUSG00000048070	Pirt	A530088H08Rik	phosphoinositide-interacting regulator of transient receptor potential channels	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4157234-2	chr19	4157134	4157334	+	557.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_016933)	TTS (NM_016933)	2588.0	NM_016933	19265.0	Mm.271937	NM_016933	ENSMUSG00000045826	Ptprcap	AI605264|CD-45-AP|LPAP|LSM-1	protein tyrosine phosphatase, receptor type, C polypeptide-associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-55498239-2	chr12	55498139	55498339	+	979.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5592.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-6744604-2	chr17	6744504	6744704	+	698.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009510, intron 7 of 12)	intron (NM_009510, intron 7 of 12)	38176.0	NM_009510	22350.0	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-6297345-2	chr11	6297245	6297445	+	589.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_010956, intron 2 of 22)	intron (NM_010956, intron 2 of 22)	4766.0	NM_001361902	18293.0	Mm.276348	NM_010956	ENSMUSG00000020456	Ogdh	2210403E04Rik|2210412K19Rik|AA409584|d1401|mKIAA4192	oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-89674355-3	chr9	89674233	89674433	+	838.266663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30710.0	NM_025360	66111.0	Mm.27606	NM_025360	ENSMUSG00000032353	Tmed3	1200002G13Rik|AW546672|P24b	transmembrane p24 trafficking protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-76344954-3	chr10	76344844	76345044	+	980.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081419, intron 1 of 37)	CpG	347.0	NM_001081419	64451.0	Mm.33183	NM_001081419	ENSMUSG00000020231	Dip2a	4931420H10Rik|AI426328|Dip2|Kiaa0184-hp|mKIAA0184	disco interacting protein 2 homolog A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-77128865-4	chr16	77128772	77128972	+	965.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	114803.0	NM_013918	30940.0	Mm.40986	NM_013918	ENSMUSG00000022867	Usp25	-	ubiquitin specific peptidase 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-24050059-2	chr11	24049959	24050159	+	633.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27997.0	NM_016707	14025.0	Mm.53687	NM_016707	ENSMUSG00000000861	Bcl11a	2810047E18Rik|BCL-11A|Ctip1|D930021L15Rik|Evi9|Evi9a|Evi9b|Evi9c|mKIAA1809	B cell CLL/lymphoma 11A (zinc finger protein)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141162147-2	chr4	141162047	141162247	+	965.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172518, intron 1 of 9)	intron (NM_172518, intron 1 of 9)	14225.0	NM_172518	213499.0	Mm.28865	NM_172518	ENSMUSG00000028920	Fbxo42	6720460I06Rik|mKIAA1332	F-box protein 42	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-82356621-2	chr8	82356535	82356735	+	701.125	f0_balb.idr|f1_balb.idr	intron (NM_008357, intron 2 of 7)	intron (NM_008357, intron 2 of 7)	45951.0	NM_001254747	16168.0	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	0.606336167799697	0.880892989143109	1.18003942665638	1.13895331492662	1.39442885203573	1.81008785695865	0.637515079592782	0.625934073877902	1.03057409898638	0.500392246941095	0.938059363548374
Merged-chr15-36148597-2	chr15	36148497	36148697	+	814.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-8197.0	NM_001195748	626596.0	Mm.321798	NM_001195748	ENSMUSG00000037627	Rgs22	-	regulator of G-protein signalling 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-29276866-3	chr6	29276710	29276910	+	613.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4184.0	NM_023516	69573.0	Mm.45161	NM_023516	ENSMUSG00000043421	Hilpda	2310016C08Rik|AW049004|Hig2	hypoxia inducible lipid droplet associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19887338-2	chr7	19887238	19887438	+	718.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177036, intron 1 of 6)	B1F|SINE|Alu	627.0	NM_177036	319930.0	Mm.215839	NM_177036	ENSMUSG00000049848	Ceacam19	C130022P09Rik|CEAL1	carcinoembryonic antigen-related cell adhesion molecule 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-129381377-2	chr6	129381277	129381477	+	581.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027709, intron 2 of 5)	MTEa|LTR|ERVL-MaLR	4126.0	NM_027709	71183.0	Mm.79402	NM_027709	ENSMUSG00000030158	Clec12b	4933425B16Rik	C-type lectin domain family 12, member B	protein-coding	-2.18308165884198	-2.15547475440471	-2.16382331017202	-2.1706810624505	-2.18114370519566	-2.15366558754311	-2.03057248461154	-2.16945352807143	0.759018020146679	0.829933115115583	1
Merged-chr16-92703082-2	chr16	92702978	92703178	+	914.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111022, intron 2 of 6)	intron (NM_001111022, intron 2 of 6)	-5749.0	NM_009821	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	-0.914587585352826	-1.14968844836017	-1.16012564310979	-1.16869906563582	-0.801023986531728	-1.14742666471813	-1.15776289099527	-1.16716442710272	0.46649237519341	0.890119923761052	1
Merged-chr1-45905314-1	chr1	45905214	45905414	+	795.0	f0_balb.idr	Intergenic	Intergenic	20280.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-62804729-2	chr14	62804629	62804829	+	713.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045503, intron 2 of 6)	intron (NR_045503, intron 2 of 6)	-32961.0	NM_175546	268752.0	Mm.1960	NM_175546	ENSMUSG00000014547	Wdfy2	5830485M08|B130024L21Rik|ProF|ZFYVE22	WD repeat and FYVE domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96905260-4	chr3	96905110	96905310	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026229)	promoter-TSS (NM_026229)	88.0	NM_026229	67549.0	Mm.46722	NM_026229	ENSMUSG00000028096	Gpr89	4933412D19Rik|Gpr89a|SH120	G protein-coupled receptor 89	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-46259457-2	chr17	46259357	46259557	+	845.8333130000001	f1_balb.idr|f1_c57bl6.idr	exon (NM_001252473, exon 10 of 10)	exon (NM_001252473, exon 10 of 10)	5292.0	NM_001111142	224813.0	Mm.70999	NM_001111142	ENSMUSG00000071073	Lrrc73	Gm88	leucine rich repeat containing 73	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-41619715-3	chr13	41619609	41619809	+	758.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163572, intron 1 of 2)	intron (NM_001163572, intron 1 of 2)	13493.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-102887659-4	chr2	102887564	102887764	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039150, intron 1 of 13)	intron (NM_001039150, intron 1 of 13)	14001.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90486019-2	chr2	90485919	90486119	+	809.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	-6845.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30214958-4	chr2	30214862	30215062	+	892.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9115.0	NM_172404	70266.0	Mm.216089	NM_172404	ENSMUSG00000039648	Kyat1	2010009K05Rik|AI182306|Ccbl1|Gtk|Kat1|KatI	kynurenine aminotransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-20809841-4	chr18	20809727	20809927	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR40|LTR|ERVK	-63423.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-124033441-1	chr8	124033341	124033541	+	560.0	f0_balb.idr	intron (NM_001029876, intron 3 of 8)	intron (NM_001029876, intron 3 of 8)	9968.0	NM_001029876	382038.0	Mm.334891	NM_001029876	ENSMUSG00000031976	Urb2	C77575|mKIAA0133	URB2 ribosome biogenesis 2 homolog (S. cerevisiae)	protein-coding	1.40185218487822	1.11089590460111	1.31997485808258	1.62397159099446	2.06799841924113	1.89025874171301	1.8248979966206	2.40775612866185	2.22544055556659	0.0410869279887426	0.289070149731587
Merged-chr1-33814528-4	chr1	33814485	33814685	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359275)	promoter-TSS (NM_001359275)	10.0	NM_133817	98403.0	Mm.289103	NM_133817	ENSMUSG00000042197	Zfp451	4930515K21Rik|4933435G09Rik|AI596398|COASTER|Kiaa0576-hp|Znf451|mKIAA1702	zinc finger protein 451	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53048026-2	chr4	53047926	53048126	+	874.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 37 of 49)	MTC|LTR|ERVL-MaLR	36146.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45305510-4	chr7	45305425	45305625	+	806.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175130, intron 20 of 24)	intron (NM_175130, intron 20 of 24)	-19433.0	NR_110499	100040970.0	Mm.289810	NR_110499	ENSMUSG00000046721	Rpl14-ps1	Gm9811	ribosomal protein L14, pseudogene 1	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-105595725-4	chr5	105595630	105595830	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133897, intron 3 of 3)	intron (NM_133897, intron 3 of 3)	76259.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-40626694-4	chr12	40626591	40626791	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 4 of 52)	intron (NM_172803, intron 4 of 52)	180638.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-14355167-2	chr17	14355067	14355267	+	638.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_022315, intron 7 of 12)	intron (NM_022315, intron 7 of 12)	43775.0	NR_027986	74917.0	Mm.32228	NM_183107		4930474M22Rik	-	RIKEN cDNA 4930474M22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-45561661-2	chr17	45561437	45561637	+	655.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001304956, intron 5 of 5)	B1_Mus1|SINE|Alu	-2399.0	NM_001357105	73836.0	Mm.289716	NM_028662	ENSMUSG00000037089	Slc35b2	1110003M08Rik|AA407792|AI842275|PAPST1|Slc35b1	solute carrier family 35, member B2	protein-coding	0.339128438286867	1.20073381574457	0.360916509322806	0.352814945700744	1.34018150317182	0.373579394415878	0.363213780020279	1.09641339982506	1.09408866394193	0.567281262288526	1
Merged-chr12-17000120-4	chr12	17000006	17000206	+	972.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172574)	promoter-TSS (NM_172574)	12.0	NM_172574	217430.0	Mm.379451	NM_172574	ENSMUSG00000045679	Pqlc3	C78076|E030024M05Rik	PQ loop repeat containing	protein-coding	3.56359144487601	2.16600027095657	4.70433777414619	3.15091190549444	4.66621481637851	4.28439354863188	3.66661795305755	3.70640142997168	0.602179082743484	0.323734340370459	0.826332612263711
Merged-chr6-84661261-1	chr6	84661161	84661361	+	842.0	f0_balb.idr	intron (NM_177077, intron 20 of 21)	L1MD3|LINE|L1	-67353.0	NM_001177713	232174.0	Mm.255246	NM_175475	ENSMUSG00000063415	Cyp26b1	CP26|P450RAI-2	cytochrome P450, family 26, subfamily b, polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35208426-4	chr17	35208318	35208518	+	999.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3067.0	NM_010735	16992.0	Mm.87787	NM_010735	ENSMUSG00000024402	Lta	LT|LT-[a]|LT-alpha|LT[a]|LTalpha|Ltx|TNF-beta|TNFSF1|Tnfb|Tnfsf1b|Tnlg1e|hlb382	lymphotoxin A	protein-coding	1.25479914654753	1.3868264644708	0.461254659707115	0.644723872378305	1.18720208921393	0.473998770584771	0.463564439944572	0.454545171571314	-1.41141906304334	0.421100088673436	0.900322118218157
Merged-chr2-30084320-4	chr2	30084214	30084414	+	916.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153805, intron 9 of 21)	MTD|LTR|ERVL-MaLR	5616.0	NM_153805	263803.0	Mm.233843	NM_153805	ENSMUSG00000026785	Pkn3	AW209115|BC034126	protein kinase N3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166980335-4	chr2	166980262	166980462	+	990.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109905, intron 1 of 11)	URR1B|DNA|hAT-Charlie	-15645.0	NR_111895	20853.0	Mm.73276	NM_011490	ENSMUSG00000039536	Stau1	5830401L18Rik|AW549911|C85792|Stau	staufen double-stranded RNA binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-6341173-2	chr4	6340994	6341194	+	714.5	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-24586.0	NM_016807	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	2.72877897536993	1.87514514029135	2.52040526039828	3.42658345995933	2.66216027720605	2.62783456255951	2.54024144922109	3.19971234536965	0.0310169846332091	0.96736189727833	0.998431161219273
Merged-chr6-120954156-4	chr6	120954058	120954258	+	964.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001270475, intron 27 of 31)	intron (NM_001270475, intron 27 of 31)	-4686.0	NR_138099	215458.0	Mm.122399	NR_138099		LOC215458	-	uncharacterized LOC215458	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-81708701-2	chr17	81708601	81708801	+	715.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 1 of 8)	intron (NR_104580, intron 1 of 8)	29686.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-122409166-4	chr2	122409064	122409264	+	970.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31656.0	NM_172980	269346.0	Mm.29510	NM_172980	ENSMUSG00000027219	Slc28a2	2010208B10Rik|B430217P18|BB152493|Cnt2|SPNT	solute carrier family 28 (sodium-coupled nucleoside transporter), member 2	protein-coding	0.0434356990425273	0.531038556169767	0.0538424457886868	0.560369695105103	0.304147673708575	0.405617124422763	0.0549647447423773	0.0506066803167615	-0.853688731224363	0.683766488945912	1
Merged-chr15-80671611-3	chr15	80671520	80671720	+	939.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145986)	promoter-TSS (NM_145986)	-227.0	NM_145986	213956.0	Mm.132439	NM_145986	ENSMUSG00000022408	Fam83f	AW544981	family with sequence similarity 83, member F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-51185624-4	chr3	51185533	51185733	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38814.0	NM_009834	12457.0	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	5.35653685269768	5.22453295116691	4.84535303213224	5.4069771563759	4.75559249487574	4.40583061830456	4.26151668287128	3.67252771693765	-1.08917049266011	0.00275632983575895	0.0426165533111287
Merged-chr14-48457444-4	chr14	48457345	48457545	+	876.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310584, intron 4 of 16)	intron (NM_001310584, intron 4 of 16)	11093.0	NR_132324	218989.0	Mm.85211	NM_172600	ENSMUSG00000036339	Tmem260	5930435P15|6720456H20Rik	transmembrane protein 260	protein-coding	3.34198007728647	4.45752458736498	4.72737322069795	3.6833584469357	3.3711971317472	3.60830314235025	4.14199029952999	2.45854094095952	-0.900917973048393	0.113322804384558	0.527131173561357
Merged-chr11-98004060-2	chr11	98003960	98004160	+	552.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001159320)	TTS (NM_001159320)	-7887.0	NR_152188	217151.0	Mm.277896	NM_207231	ENSMUSG00000038352	Arl5c	Arl12|BC065791	ADP-ribosylation factor-like 5C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-120958365-2	chr6	120958265	120958465	+	860.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_138099)	promoter-TSS (NR_138099)	-479.0	NR_138099	215458.0	Mm.122399	NR_138099		LOC215458	-	uncharacterized LOC215458	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-47056197-1	chr13	47056097	47056297	+	910.0	f1_balb.idr	intron (NM_172262, intron 6 of 20)	intron (NM_172262, intron 6 of 20)	12698.0	NM_172262	218214.0	Mm.31259	NM_172262	ENSMUSG00000038080	Kdm1b	4632428N09Rik|AI482520|Aof1	lysine (K)-specific demethylase 1B	protein-coding	-0.289851946104314	-0.737899168765768	-0.740932179010924	-0.743264539078787	-0.280173431323445	-0.737213951634147	-0.740264187498491	-0.742857569821679	0.0418983010157508	0.98887086484455	1
Merged-chr13-99187073-4	chr13	99187006	99187206	+	912.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004149, intron 1 of 4)	intron (NM_001004149, intron 1 of 4)	2283.0	NM_001004149	238803.0	Mm.343207	NM_001004149	ENSMUSG00000050919	Zfp366	DC-SCRIPT|Znf366	zinc finger protein 366	protein-coding	1.68185522587619	0.530271525372269	0.518293421320553	0.508898671983901	1.27256059391482	0.532942099283712	0.738903854508176	1.26314010892206	0.169661623248098	0.920710636159151	0.998431161219273
Merged-chr7-100664502-2	chr7	100664402	100664602	+	787.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2108.0	NM_001163182	27276.0	Mm.491216	NM_013746	ENSMUSG00000030701	Plekhb1	AI315628|PHR1|Phret1|evt-1	pleckstrin homology domain containing, family B (evectins) member 1	protein-coding	-1.7024385483431	-1.81249224917775	-1.82134771053534	-1.82862185015837	-1.70038292649591	-1.81057323376012	-1.81934302819017	-1.82731978264371	0.0376840119903864	0.991491645451152	1
Merged-chr15-64060555-5	chr15	64060487	64060687	+	986.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144846)	promoter-TSS (NM_144846)	-139.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	-0.712858654387783	-0.702513837422703	-0.526626207649274	-0.708521819923373	-0.712213905172732	-0.0731178042359271	-0.52218667267895	-0.708065091062038	2.30162392632397	0.395492865724171	1
Merged-chr17-73940093-2	chr17	73939993	73940193	+	750.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_011723, intron 3 of 35)	intron (NM_011723, intron 3 of 35)	10103.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-9316759-2	chr18	9316659	9316859	+	791.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026484, intron 9 of 9)	intron (NM_026484, intron 9 of 9)	-33950.0	NM_153086	225152.0	Mm.119273	NM_153086	ENSMUSG00000036855	Gjd4	9430022F06Rik|Cx39	gap junction protein, delta 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126566160-4	chr8	126566066	126566266	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27270.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	4.53068992317439	5.08979159331437	4.80136938316846	5.75314063494663	5.46636168301468	5.7805983022226	5.62180400195702	5.50307277128788	0.545236255584534	0.0888453879461516	0.459532997509058
Merged-chr13-23759377-2	chr13	23759277	23759477	+	820.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	1872.0	NM_178192	326619.0	Mm.228709	NM_178192	ENSMUSG00000060093	Hist1h4a	-	histone cluster 1, H4a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-11203358-4	chr16	11203239	11203439	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_038156)	promoter-TSS (NR_038156)	-44.0	NR_038156	69918.0	Mm.440400	NR_038154		2610020C07Rik	-	RIKEN cDNA 2610020C07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70958210-1	chr11	70958110	70958310	+	806.0	f0_balb.idr	intron (NM_001083331, intron 5 of 16)	intron (NM_001083331, intron 5 of 16)	11763.0	NM_172394	19069.0	Mm.288962	NM_172394	ENSMUSG00000040667	Nup88	Nup84|Prei2	nucleoporin 88	protein-coding	1.64852002414315	1.12468985446415	0.858185805280648	0.843641853507052	1.75531642915239	1.90273643956445	2.02031658754141	0.846206932944889	1.80980707361262	0.184742249236472	0.660415655093519
Merged-chr5-142471935-2	chr5	142471835	142472035	+	653.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172725, intron 9 of 16)	PB1D11|SINE|Alu	8004.0	NM_172725	231855.0	Mm.78250	NM_172725	ENSMUSG00000039623	Ap5z1	C330006K01Rik	adaptor-related protein complex 5, zeta 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-69372025-4	chr12	69371896	69372096	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007481)	promoter-TSS (NM_007481)	-154.0	NM_007481	11845.0	Mm.27308	NM_007481	ENSMUSG00000044147	Arf6	AI788669|AW496366	ADP-ribosylation factor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-9085588-2	chr5	9085488	9085688	+	596.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15149.0	NM_001081029	652925.0	Mm.439954	NM_001081029	ENSMUSG00000079659	Tmem243	4930420K17Rik|E030031F02Rik	transmembrane protein 243, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-36212439-2	chr2	36212339	36212539	+	666.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17987.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-88132936-7	chr17	88132824	88133024	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7412.0	NM_001190356	225058.0	Mm.312053	NM_001190356		Gm4832	EG225058	predicted gene 4832	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-74371050-2	chr1	74370950	74371150	+	684.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-4153.0	NM_013612	18173.0	Mm.2913	NM_013612	ENSMUSG00000026177	Slc11a1	Bcg|Ity|Ity1|Lsh|Nramp|Nramp1|ity	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-68563529-2	chr2	68563429	68563629	+	720.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18884.0	NM_177651	227998.0	Mm.67562	NM_177651	ENSMUSG00000053896	4933409G03Rik	-	RIKEN cDNA 4933409G03 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-112665947-2	chr13	112665847	112666047	+	718.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178746, intron 1 of 14)	URR1A|DNA|hAT-Charlie	5181.0	NM_178746	268706.0	Mm.40834	NM_175376	ENSMUSG00000047789	Slc38a9	4833412L08Rik|6720411P22Rik|9130023D20Rik|9430067K09Rik|A730092C09	solute carrier family 38, member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-49048584-2	chr7	49048484	49048684	+	723.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111016, intron 2 of 38)	intron (NM_001111016, intron 2 of 38)	89511.0	NM_001111016	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-96229316-2	chr10	96229216	96229416	+	826.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_110448, intron 1 of 2)	intron (NR_110448, intron 1 of 2)	3109.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-5519540-2	chr11	5519448	5519648	+	693.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-1093.0	NM_013842	22433.0	Mm.469937	NM_013842	ENSMUSG00000020484	Xbp1	D11Ertd39e|TREB-5|TREB5|XBP-1	X-box binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-129878571-4	chr3	129878459	129878659	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023196)	promoter-TSS (NM_023196)	-47.0	NR_104611	66350.0	Mm.151951	NM_023196	ENSMUSG00000027999	Pla2g12a	2310004B05Rik|GXII|GXII-1|GXII-1-PLA2|Pla2g12|Rossy|mGXII-1	phospholipase A2, group XIIA	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-80617165-4	chr2	80617035	80617235	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024438)	promoter-TSS (NM_024438)	-79.0	NM_024438	68082.0	Mm.306818	NM_024438	ENSMUSG00000027001	Dusp19	5930436K22Rik|C79103|SKRP1|TS-DSP1	dual specificity phosphatase 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84738444-3	chr8	84738458	84738658	+	803.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081982, intron 2 of 9)	intron (NM_001081982, intron 2 of 9)	35811.0	NM_001081981	18032.0	Mm.9394	NM_010906	ENSMUSG00000001911	Nfix	CTF|NF-I/X|NF1-X|NFI-X	nuclear factor I/X	protein-coding	0.737942101433419	2.066892451871	2.22319935957326	0.765464449582101	1.41222642534915	1.28831427730893	0.785882022981003	1.19581020998865	-1.43627482081256	0.300544476199053	0.801963340127147
Merged-chr9-35115980-3	chr9	35115891	35116091	+	865.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029475)	promoter-TSS (NR_029475)	-737.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	0.492362663882762	0.342153596065081	0.16169537370312	0.30645621422496	0.500373244864748	0.346684284707292	0.586051108343272	0.158583545056332	0.594351891883194	0.744435269755503	1
Merged-chr12-8522946-5	chr12	8522871	8523071	+	809.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	16595.0	NM_001038660	328059.0	Mm.46326	NM_177802	ENSMUSG00000020600	Slc7a15	Arpat	solute carrier family 7 (cationic amino acid transporter, y+ system), member 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-78521099-4	chr9	78521040	78521240	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39416.0	NM_010106	13627.0	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-138526384-4	chr3	138526257	138526457	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_035481)	promoter-TSS (NR_035481)	-64.0	NR_035481	100316706.0		NR_035481	ENSMUSG00000088373	Mir1956	mir-1956|mmu-mir-1956	microRNA 1956	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-156860509-3	chr1	156860337	156860537	+	818.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_028333, exon 5 of 5)	exon (NM_028333, exon 5 of 5)	21414.0	NM_028333	72713.0	Mm.389206	NM_028333	ENSMUSG00000033544	Angptl1	2810039D03Rik|ANG3|ANGPT3|ANGY|ARP1	angiopoietin-like 1	protein-coding	0.814246990023753	0.187199426663361	0.178307599431397	0.171360893083063	0.161408222964561	0.607731049797334	0.180279409264339	1.32546498786626	1.55727467314631	0.442053798828603	1
Merged-chr7-99085293-2	chr7	99085193	99085393	+	651.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 5 of 14)	intron (NM_178635, intron 5 of 14)	55851.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-35745930-4	chr18	35745853	35746053	+	847.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5399.0	NM_001289592	72512.0	Mm.45995	NM_028261	ENSMUSG00000024349	Tmem173	2610307O08Rik|ERIS|MPYS|Mita|STING	transmembrane protein 173	protein-coding	-1.8418762459921	-1.8125357239735	-1.82140854000656	-1.82869693527674	-1.56059678980999	-1.8106129477253	-1.81939992894326	-1.82739231600805	1.3620893379502	0.699511506488145	1
Merged-chr9-118856832-4	chr9	118856736	118856936	+	904.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 9 of 13)	intron (NM_001113514, intron 9 of 13)	-69700.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64885233-4	chr5	64885149	64885349	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47450.0	NM_030682	21897.0	Mm.273024	NM_030682	ENSMUSG00000044827	Tlr1	-	toll-like receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-101082034-1	chr12	101081934	101082134	+	545.0	f1_balb.idr	promoter-TSS (NR_038047)	promoter-TSS (NR_038047)	-417.0	NR_038048	319760.0	Mm.440198	NM_176997	ENSMUSG00000097121	D130020L05Rik	9430007L23Rik	RIKEN cDNA D130020L05 gene	ncRNA	-0.758604916710805	-0.881510999585754	-0.888160599081844	-0.890158287924046	-0.635773171357596	-0.87895920820787	-0.8875879482114	-0.480323219167976	1.93864606206767	0.500989653978189	1
Merged-chr17-64747147-2	chr17	64747047	64747247	+	964.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008549, intron 20 of 21)	intron (NM_008549, intron 20 of 21)	-19964.0	NR_105051	101202683.0	Mm.393309	NR_105051		Dreh	-	down-regulated in hepatocellular carcinoma	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-139602392-2	chr4	139602292	139602492	+	611.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205173, intron 1 of 8)	intron (NM_001205173, intron 1 of 8)	-20502.0	NM_175438	212647.0	Mm.273571	NM_175438	ENSMUSG00000028737	Aldh4a1	A930035F14Rik|Ahd-1|Ahd1|Aldh4|Aldh5a1|E330022C09|P5cd|P5cdh|P5cdhl|P5cdhs|Ssdh1	aldehyde dehydrogenase 4 family, member A1	protein-coding	-2.18233058068552	-2.15536956715525	-2.16352280018114	-2.04193253143548	-2.18043796738662	-2.15360272754651	-2.16167708693786	-2.16902129354933	-0.683654500252594	0.846597994014493	1
Merged-chr19-46479761-2	chr19	46479661	46479861	+	952.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025391, intron 10 of 11)	intron (NM_001025391, intron 10 of 11)	-21887.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-85325678-4	chr9	85325592	85325792	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160379, intron 2 of 2)	intron (NM_001160379, intron 2 of 2)	1432.0	NM_001160378	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-29486033-1	chr19	29485933	29486133	+	558.0	f1_balb.idr	Intergenic	Intergenic	35954.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126676398-3	chr7	126676296	126676496	+	707.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133670)	promoter-TSS (NM_133670)	22.0	NM_133670	20887.0	Mm.368982	NM_133670	ENSMUSG00000030711	Sult1a1	AI266890|PST|ST1A1|ST1A4|Stp|Stp1|mSTp1	sulfotransferase family 1A, phenol-preferring, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-56944588-4	chr10	56944476	56944676	+	940.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	512595.0	NR_152768	102640560.0	Mm.417249	NR_152768		Gm36595	-	predicted gene, 36595	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-149001693-3	chr4	149001588	149001788	+	907.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019781, intron 3 of 8)	intron (NM_019781, intron 3 of 8)	-49366.0	NR_154553	108168987.0	Mm.393596	NR_154553		Gm13205	AA408865	predicted gene 13205	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-20251420-4	chr11	20251340	20251540	+	979.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	-2016.0	NM_172260	216543.0	Mm.260314	NM_172260	ENSMUSG00000044066	Cep68	6030463E10Rik|AI481761|BC027174|Kiaa0582	centrosomal protein 68	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-32115371-4	chr16	32115256	32115456	+	986.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15554.0	NM_025892	66994.0	Mm.22990	NM_025892	ENSMUSG00000035790	Cep19	1500031L02Rik|AI428934|AL022620	centrosomal protein 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-97839681-4	chr4	97839631	97839831	+	996.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010905, intron 2 of 10)	intron (NM_010905, intron 2 of 10)	62105.0	NM_010905	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-30402614-2	chr6	30402514	30402714	+	568.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001311087, intron 1 of 8)	(TG)n|Simple_repeat|Simple_repeat	759.0	NM_001311087	76788.0	Mm.277308	NM_029742	ENSMUSG00000029775	Klhdc10	2410127E18Rik|AI593221|mKIAA0265	kelch domain containing 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-82797048-3	chr10	82797005	82797205	+	872.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15018.0	NR_038042	70003.0	Mm.48789	NR_038042	ENSMUSG00000056821	1700028I16Rik	-	RIKEN cDNA 1700028I16 gene	ncRNA	1.37826097624314	0.937520932937737	1.64267489559206	0.902557224493466	1.6270377223009	2.33662074971733	1.15878737807608	1.71983430752763	1.7279210943575	0.164205885416626	0.627840562356214
Merged-chr16-76372429-6	chr16	76372325	76372525	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173440, intron 1 of 3)	CpG	624.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-165651374-4	chr1	165651273	165651473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038846, intron 5 of 5)	intron (NM_001038846, intron 5 of 5)	-16832.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-143467874-2	chr5	143467774	143467974	+	861.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144915, intron 2 of 14)	intron (NM_144915, intron 2 of 14)	3381.0	NM_144915	231871.0	Mm.469963	NM_144915	ENSMUSG00000039206	Daglb	E330036I19Rik	diacylglycerol lipase, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-56744387-4	chr19	56744298	56744498	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22026.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-116437119-4	chr3	116437021	116437221	+	771.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER72|LTR|ERV1	-13089.0	NM_001173553	229776.0	Mm.17647	NM_001080818	ENSMUSG00000033502	Cdc14a	A830059A17Rik|CDC14A2|CDC14a1|Cdc14	CDC14 cell division cycle 14A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-154402165-3	chr2	154402065	154402265	+	923.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009228, intron 2 of 7)	B3|SINE|B2	5919.0	NM_009228	20648.0	Mm.1541	NM_009228	ENSMUSG00000027488	Snta1	AW228934|Snt1	syntrophin, acidic 1	protein-coding	1.42246603284505	0.821550156017499	1.44858145805123	0.798253687118909	1.43575213939837	0.824469560070702	1.4614340455068	1.61577609781469	0.790211343481683	0.579298217325558	0.965985075107763
Merged-chr19-11497433-4	chr19	11497336	11497536	+	871.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164202, intron 1 of 4)	intron (NM_001164202, intron 1 of 4)	5398.0	NM_001164202	666926.0	Mm.486382	NM_001164202	ENSMUSG00000058470	Gm8369	EG666926	predicted gene 8369	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-33310091-2	chr12	33309991	33310191	+	808.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033436, intron 1 of 7)	L1MB3|LINE|L1	7576.0	NM_001033436	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-32351394-3	chr4	32351235	32351435	+	802.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66100.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-32695975-4	chr9	32695856	32696056	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011808)	promoter-TSS (NM_011808)	-86.0	NM_011808	23871.0	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	3.39197212822143	2.51886923906429	3.14552670437511	1.61675081109443	4.21993488993216	4.16145572117364	4.18967436318226	3.85567582893693	1.91881832974761	0.00143121895325805	0.0260441329643934
Merged-chr18-5345019-6	chr18	5344899	5345099	+	999.5714109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10192.0	NM_001360447	240186.0	Mm.118257	NM_178722	ENSMUSG00000050945	Zfp438	9430031G09|9430091M14Rik|B830013J05Rik	zinc finger protein 438	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122646752-2	chr5	122646652	122646852	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038845, intron 1 of 12)	L2|LINE|L2	2841.0	NM_001038887	18439.0	Mm.42026	NM_011027	ENSMUSG00000029468	P2rx7	AI467586|P2X(7)|P2X7R	purinergic receptor P2X, ligand-gated ion channel, 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-61092625-3	chr18	61092512	61092712	+	772.111145	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR11A2|LTR|ERVK	-12960.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133008034-2	chr4	133007934	133008134	+	846.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3472.0	NM_146155	230793.0	Mm.31816	NM_146155	ENSMUSG00000037692	Ahdc1	D030015G18Rik	AT hook, DNA binding motif, containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-96951526-4	chr7	96951442	96951642	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153591)	promoter-TSS (NM_153591)	15.0	NM_153591	244141.0	Mm.274864	NM_153591	ENSMUSG00000018995	Nars2	AI875199	asparaginyl-tRNA synthetase 2 (mitochondrial)(putative)	protein-coding	6.09551522623657	5.76728569819219	5.9405651181561	6.2395961477526	6.5084930758598	5.49644931171751	5.4013262978564	6.08152134623178	-0.0727338390058404	0.793946302317291	0.998431161219273
Merged-chr15-25441748-2	chr15	25441648	25441848	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_027376, intron 1 of 1)	intron (NR_027376, intron 1 of 1)	27556.0	NR_027376	432939.0	Mm.146555	NM_001013791		Gm5468	100040583|EG432939	predicted gene 5468	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111151210-1	chr12	111151110	111151310	+	779.0	f1_balb.idr	Intergenic	Intergenic	-15160.0	NM_001286122	22031.0	Mm.27431	NM_011632	ENSMUSG00000021277	Traf3	AI528849|CAP-1|CD40bp|CRAF1|LAP1|T-BAM|amn	TNF receptor-associated factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5930388-4	chr19	5930291	5930491	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5575.0	NM_026772	104252.0	Mm.491103	NM_026772	ENSMUSG00000045664	Cdc42ep2	1110008C05Rik|Borg1|Cep2|D19Bwg1013e	CDC42 effector protein (Rho GTPase binding) 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-118098463-4	chr14	118098364	118098564	+	956.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	34301.0	NM_029578	76355.0	Mm.251537	NM_029578	ENSMUSG00000022130	Tgds	2610017J16Rik|2610025M23Rik|AI648925	TDP-glucose 4,6-dehydratase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-75797961-4	chr13	75797863	75798063	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41922.0	NM_001360151	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	6.88041022917469	6.46018629754012	6.93098226526612	6.21809025800038	6.32595031465392	6.46182931981855	6.23919124783087	6.19278256292389	-0.375375541782534	0.0838063918434792	0.443775159657124
Merged-chr15-50779842-4	chr15	50779735	50779935	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310485, intron 5 of 7)	intron (NM_001310485, intron 5 of 7)	109214.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-11430966-4	chr8	11430876	11431076	+	985.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009932, intron 29 of 47)	intron (NM_009932, intron 29 of 47)	-46953.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120045917-2	chr11	120045754	120045954	+	774.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001198785, intron 1 of 13)	intron (NM_001198785, intron 1 of 13)	1291.0	NM_001198785	11302.0	Mm.6826	NM_007377	ENSMUSG00000025375	Aatk	AATYK|aatyk1|mKIAA0641	apoptosis-associated tyrosine kinase	protein-coding	1.60666220781421	0.390782392826721	0.379722961684025	0.371050099135157	0.694512446367745	0.630641772231468	0.382179419853983	1.23122862339503	-0.268561773168548	0.879939405087132	0.998431161219273
Merged-chr5-36511569-2	chr5	36511469	36511669	+	586.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133910, intron 9 of 13)	intron (NM_133910, intron 9 of 13)	19054.0	NM_001113364	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-14272289-4	chr2	14272175	14272375	+	977.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008625, intron 9 of 29)	intron (NM_008625, intron 9 of 29)	11272.0	NR_030609	100124488.0		NR_030609	ENSMUSG00000077897	Mir511	Mirn511|mir-511|mmu-mir-511	microRNA 511	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-80676439-4	chr1	80676349	80676549	+	951.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175291, intron 1 of 55)	intron (NM_175291, intron 1 of 55)	-11097.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-50466261-2	chr17	50466161	50466361	+	640.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-43286.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-102055174-4	chr5	102055053	102055253	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 1 of 66)	MLTR11B|LTR|ERVK	14768.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100534393-4	chr7	100534307	100534507	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2693.0	NM_183270	68185.0	Mm.228995	NM_183270	ENSMUSG00000044881	Coa4	5330414O08Rik|AI115477|AW047259|Chchd8|E2ig2	cytochrome c oxidase assembly factor 4	protein-coding	3.03944406715275	2.44183140196332	3.28943110433308	3.19958842270924	3.33671871874984	2.63096896494657	2.68807637685478	3.61471203162909	0.193193149075562	0.768109273187634	0.998431161219273
Merged-chr11-97362266-4	chr11	97362188	97362388	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138657)	promoter-TSS (NM_138657)	-263.0	NM_138657	192157.0	Mm.34339	NM_138657	ENSMUSG00000038485	Socs7	2310063P06Rik|C85125|Nap4	suppressor of cytokine signaling 7	protein-coding	2.92915655139165	1.52553638982934	2.72383034327119	2.92985656443612	2.88004491209816	1.5358588507979	3.27295290115138	3.17404154027917	0.424635534755368	0.623542965625097	0.980259659844413
Merged-chr2-90625147-3	chr2	90625031	90625231	+	733.400024	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44484.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-111923682-4	chr8	111923599	111923799	+	982.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033321, intron 2 of 6)	ORR1E|LTR|ERVL-MaLR	10114.0	NM_001357348	234740.0	Mm.87513	NM_001033321	ENSMUSG00000031951	Tmem231	4932417I16Rik|Gm178	transmembrane protein 231	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83102182-5	chr6	83102149	83102349	+	915.2999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081266, exon 1 of 9)	exon (NM_001081266, exon 1 of 9)	733.0	NM_001081266	243510.0	Mm.436553	NM_001081266	ENSMUSG00000107499	Ccdc142	A230058J24Rik	coiled-coil domain containing 142	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-66434897-2	chr7	66434797	66434997	+	610.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7420.0	NM_053080	56847.0	Mm.140988	NM_053080	ENSMUSG00000015134	Aldh1a3	ALDH6|RALDH3|V1	aldehyde dehydrogenase family 1, subfamily A3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-102424911-4	chr11	102424804	102425004	+	983.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5418.0	NM_008175	14824.0	Mm.1568	NM_008175	ENSMUSG00000034708	Grn	Pgrn|epithelin	granulin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-85510946-4	chr8	85510832	85511032	+	989.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173866, intron 5 of 11)	intron (NM_173866, intron 5 of 11)	18315.0	NM_173866	108682.0	Mm.200423	NM_173866	ENSMUSG00000031700	Gpt2	4631422C05Rik|ALT2|AU014768|AU041193|C87201	glutamic pyruvate transaminase (alanine aminotransferase) 2	protein-coding	3.79560896570181	2.51668593512989	3.21871494845497	2.66568608826982	2.78428329848979	3.62602756185839	3.96471494124254	3.67903872691599	0.644260041807398	0.303338904454982	0.805462835517226
Merged-chr15-98864357-2	chr15	98864257	98864457	+	663.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001033276, exon 10 of 55)	exon (NM_001033276, exon 10 of 55)	6848.0	NM_001033276	381022.0	Mm.264889	NM_001033276	ENSMUSG00000048154	Kmt2d	ALR|BC032281|BC058659|C430014K11Rik|KMT2B|Mll2|Mll4	lysine (K)-specific methyltransferase 2D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-52594557-2	chr12	52594457	52594657	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7765.0	NR_045910	73278.0	Mm.396209	NR_045910	ENSMUSG00000100315	1700031P21Rik	-	RIKEN cDNA 1700031P21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-84094983-1	chr2	84094883	84095083	+	724.0	f0_balb.idr	Intergenic	Intergenic	-153757.0	NM_027964	71861.0	Mm.116957	NM_027964	ENSMUSG00000034552	Zswim2	1700025P14Rik|4933437F18Rik|MEX	zinc finger SWIM-type containing 2	protein-coding	1.18644188166238	1.69239188500058	1.0320812458256	2.30197141680678	1.64347935496627	1.05975150873426	2.13538154085476	2.15408792343383	0.431248809462235	0.719222566405121	0.998431161219273
Merged-chr7-112240941-1	chr7	112240841	112241041	+	978.6666869999999	f0_balb.idr	intron (NM_001193305, intron 2 of 25)	intron (NM_001193305, intron 2 of 25)	15105.0	NM_001193305	320878.0	Mm.52312	NM_177282	ENSMUSG00000038244	Mical2	5330438E18Rik|9530064J02|MICAL-2|mKIAA0750	microtubule associated monooxygenase, calponin and LIM domain containing 2	protein-coding	-0.4868379018369	-0.474471000035748	-0.478522012656622	-0.481647880537709	0.250280271017416	-0.473557921390104	-0.477628483274369	-0.0433149047290092	3.58091249547191	0.181850074009818	1
Merged-chr1-191122954-4	chr1	191122909	191123109	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24595.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	2.02198300459501	1.24227847402975	2.39129368585083	2.0236863036338	2.03898129352541	1.24795764014757	2.41062163186244	2.03422284017804	0.0379058975235634	0.971447424521851	0.998431161219273
Merged-chr15-52953568-1	chr15	52953468	52953668	+	584.0	f0_c57.idr	Intergenic	Intergenic	241123.0	NM_027212	69790.0	Mm.195562	NM_027212	ENSMUSG00000038622	Med30	1810038N03Rik|2510044J04Rik|TRAP25|Thrap6	mediator complex subunit 30	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69920925-2	chr11	69920825	69921025	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166594)	promoter-TSS (NM_001166594)	22.0	NM_001166594	276770.0	Mm.18026	NM_181582	ENSMUSG00000078812	Eif5a	AA410058|D19Wsu54e|Eif4d|Eif5a1|eIF-4D|eIF-5A|eIF-5A-1|eIF-5A1	eukaryotic translation initiation factor 5A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-87265106-4	chr17	87265034	87265234	+	609.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176808, intron 1 of 4)	intron (NM_176808, intron 1 of 4)	813.0	NM_176808	193813.0	Mm.30251	NM_139295	ENSMUSG00000024150	Mcfd2	1810021C21Rik|F5f8d|Lman1ip|Sdnsf	multiple coagulation factor deficiency 2	protein-coding	2.67993820369328	3.26162644915628	3.51371297352613	3.25158233974218	3.02005203955214	3.38998029341215	3.75659283924637	4.07826447804733	0.655379523833425	0.256855420529273	0.755701651669989
Merged-chr10-52331825-2	chr10	52331725	52331925	+	860.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	50299.0	NM_053187	94221.0	Mm.390258	NM_053187	ENSMUSG00000019861	Gopc	2210402P09Rik|AI844555|CAL|FIG|GOPC1|PIST	golgi associated PDZ and coiled-coil motif containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-164455989-3	chr2	164455895	164456095	+	870.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4976.0	NM_025575	66460.0	Mm.44218	NM_025575	ENSMUSG00000045503	Sys1	2610042O14Rik|AI266964|C87389	SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-83749975-4	chr8	83749865	83750065	+	794.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-8654.0	NM_001163031	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-60805074-3	chr19	60804961	60805161	+	758.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	-6494.0	NM_001360619	67894.0	Mm.26148	NM_026437	ENSMUSG00000024993	Fam45a	1810055E12Rik	family with sequence similarity 45, member A	protein-coding	2.0238995355857	1.40407271659392	1.36332482129991	2.60882645728176	3.0589914622917	2.90259630119846	2.60492692856239	2.8807022824647	1.92684599771046	0.0297658347562159	0.235574198816015
Merged-chr14-59204320-2	chr14	59204220	59204420	+	560.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027764, intron 1 of 11)	intron (NM_027764, intron 1 of 11)	3092.0	NM_001360610	71330.0	Mm.234195	NM_027764	ENSMUSG00000035469	Rcbtb1	5430409I18Rik|AW111883|CLLD7|CLLL7	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101552730-4	chr11	101552637	101552837	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252223)	promoter-TSS (NM_001252223)	83.0	NM_001252223	17966.0	Mm.784	NM_008676	ENSMUSG00000017119	Nbr1	mKIAA0049	neighbor of Brca1 gene 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-63811026-2	chr5	63810926	63811126	+	833.333313	f1_balb.idr|f1_c57bl6.idr	TTS (NM_177006)	TTS (NM_177006)	-1469.0	NM_029554	76261.0	Mm.38143	NM_029554	ENSMUSG00000060512	0610040J01Rik	AI662686	RIKEN cDNA 0610040J01 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-40658531-2	chr19	40658431	40658631	+	985.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001304721, intron 1 of 9)	intron (NM_001304721, intron 1 of 9)	-1239.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-75669601-4	chr7	75669463	75669663	+	963.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 10 of 36)	intron (NM_029332, intron 10 of 36)	-178775.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122472056-2	chr8	122471956	122472156	+	780.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033142, intron 1 of 5)	MERVL_2A-int|LTR|ERVL	4008.0	NM_001033142	68718.0	Mm.34356	NM_001033142	ENSMUSG00000014470	Rnf166	1110031E24Rik|AW555115|Zfp313l	ring finger protein 166	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-84586177-2	chr16	84586073	84586273	+	788.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-93616.0	NR_040537	78023.0	Mm.243853	NR_040537		4930529L06Rik	-	RIKEN cDNA 4930529L06 gene	ncRNA	0.47756065645811	0.00440063380476191	0.871613687748306	0.165622379168432	0.140557041448872	0.00573927071016425	-0.000235595928074595	-0.0053488440087289	-3.22893026449005	0.122411466283571	1
Merged-chr5-21358818-4	chr5	21358712	21358912	+	890.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029195, intron 2 of 18)	intron (NM_029195, intron 2 of 18)	-13861.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-29442246-4	chr17	29442169	29442369	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48776.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80839077-2	chr10	80838977	80839177	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013758, intron 1 of 1)	B1_Mus2|SINE|Alu	4721.0	NM_001359746	237403.0	Mm.40213	NM_001013758	ENSMUSG00000051067	Lingo3	AI851712|LERN2	leucine rich repeat and Ig domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-16156131-3	chr19	16156020	16156220	+	729.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008139, intron 1 of 6)	intron (NM_008139, intron 1 of 6)	-7978.0	NR_033228	595139.0	Mm.405662	NR_033228		E030024N20Rik	9030417F11Rik|Ppia-ps8	peptidylprolyl isomerase A pseudogene 8	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-137796397-2	chr4	137796297	137796497	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007431)	promoter-TSS (NM_007431)	-13.0	NM_007431	11647.0	Mm.288186	NM_007431	ENSMUSG00000028766	Alpl	ALP|APTNAP|Akp-2|Akp2|TNAP|TNSALP	alkaline phosphatase, liver/bone/kidney	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19357346-4	chr7	19357243	19357443	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_007948)	TTS (NM_007948)	2140.0	NM_145822	70333.0	Mm.171370	NM_145822	ENSMUSG00000047649	Cd3eap	1190028F09|2610103M17Rik|ASE-1|Ase1|CAST|PAF49	CD3E antigen, epsilon polypeptide associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-81564496-2	chr2	81564416	81564616	+	688.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	-489142.0	NM_175513	241514.0	Mm.119383	NM_175513	ENSMUSG00000070866	Zfp804a	C630007C17Rik|Znf804a	zinc finger protein 804A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-3692263-6	chr7	3692202	3692402	+	889.611084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029934, intron 1 of 7)	intron (NM_029934, intron 1 of 7)	1223.0	NM_029934	77582.0	Mm.397541	NM_029934	ENSMUSG00000035596	Mboat7	5730589L02Rik|BB1|Leng4|Lpiat|Lpiat1|mBB1	membrane bound O-acyltransferase domain containing 7	protein-coding	1.51574945059044	2.12188372233748	1.78690864707425	2.43936772507717	1.36106777853011	2.13778996030861	1.80025393035172	1.8825880226835	-0.543911316637367	0.585955511756542	0.967449368090758
Merged-chr8-70810464-2	chr8	70810364	70810564	+	622.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_008353, intron 2 of 15)	intron (NM_008353, intron 2 of 15)	2015.0	NM_008353	16161.0	Mm.731	NM_008353	ENSMUSG00000000791	Il12rb1	CD212|IL-12R[b]	interleukin 12 receptor, beta 1	protein-coding	0.319946688717291	-0.0454979577720741	-0.050967956037564	-0.0551940426087168	0.328631432923323	-0.044266047700859	-0.0497607975182734	0.762475929947863	1.89029848548951	0.406651195342083	1
Merged-chr8-85515613-4	chr8	85515490	85515690	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173866, intron 6 of 11)	intron (NM_173866, intron 6 of 11)	22973.0	NM_173866	108682.0	Mm.200423	NM_173866	ENSMUSG00000031700	Gpt2	4631422C05Rik|ALT2|AU014768|AU041193|C87201	glutamic pyruvate transaminase (alanine aminotransferase) 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-80950467-1	chr8	80950367	80950567	+	596.0	f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	64439.0	NM_027554	74841.0	Mm.246018	NM_027554	ENSMUSG00000038250	Usp38	4631402N15Rik|4833420O05Rik|AA536967|AU044701|AW544820|mKIAA1891	ubiquitin specific peptidase 38	protein-coding	0.864737434164763	1.94044029463	0.906396729024828	1.80528174017439	1.89179875453505	1.95697527917603	0.910712509854094	1.29865059172918	0.317878695904933	0.81348013712639	0.998431161219273
Merged-chr10-86949293-4	chr10	86949218	86949418	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138673, intron 17 of 68)	intron (NM_138673, intron 17 of 68)	58624.0	NM_138673	192188.0	Mm.279611	NM_138673	ENSMUSG00000035459	Stab2	FEEL-2|FELL|MFEEL-2|STAB-2	stabilin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-123991706-3	chr9	123991601	123991801	+	685.633362	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13293.0	NM_007718	12770.0	Mm.423532	NM_007718	ENSMUSG00000064039	Ccr1l1	Cmkbr1l1	chemokine (C-C motif) receptor 1-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-156036099-4	chr1	156036022	156036222	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001160182)	promoter-TSS (NM_001160182)	86.0	NM_001160182	240832.0	Mm.253335	NM_022329	ENSMUSG00000050565	Tor1aip2	1110020D10Rik|15kDa|A130072J07|AA103493|AW060462|AW610675|C77739|Ifrg15|Lull1	torsin A interacting protein 2	protein-coding	6.35077242348954	5.98983472443626	6.16561833496642	5.071662513058	5.57273707992543	5.2879841670759	5.1288661552445	5.88517007320747	-0.525717315693471	0.0871162857236958	0.453523805082254
Merged-chr12-108333211-3	chr12	108333093	108333293	+	880.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1123.0	NM_010010	13116.0	Mm.41911	NM_010010	ENSMUSG00000021259	Cyp46a1	CH24H|Cyp46	cytochrome P450, family 46, subfamily a, polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-3286198-4	chr7	3286096	3286296	+	827.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2842.0	NM_001093764	50918.0	Mm.29874	NM_016969	ENSMUSG00000068566	Myadm	D7Wsu62e	myeloid-associated differentiation marker	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-100458463-4	chr9	100458371	100458571	+	950.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001033543, exon 7 of 7)	3' UTR (NM_001033543, exon 7 of 7)	28002.0	NM_001033543	213208.0	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-114691237-4	chr9	114691113	114691313	+	890.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146229, intron 2 of 12)	intron (NM_146229, intron 2 of 12)	2382.0	NM_146229	235661.0	Mm.128627	NM_146229	ENSMUSG00000032435	Dync1li1	1110053F02Rik|Dnclic1|LIC-1	dynein cytoplasmic 1 light intermediate chain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-126401158-3	chr4	126401053	126401253	+	857.211121	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153402, intron 5 of 18)	intron (NM_153402, intron 5 of 18)	28389.0	NM_153402	214150.0	Mm.440915	NM_153402	ENSMUSG00000028842	Ago3	AW048688|C130014L07Rik|Eif2c3	argonaute RISC catalytic subunit 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-17724228-2	chr16	17724128	17724328	+	556.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1281.0	NM_001040683	94112.0	Mm.208970	NM_033609	ENSMUSG00000012114	Med15	A230074L19Rik|AW536074|Pcqap|mPcqap	mediator complex subunit 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-32588419-4	chr4	32588339	32588539	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	13943.0	NM_010289	14610.0	Mm.377084	NM_010289	ENSMUSG00000051056	Gja10	Cx-57|Cx59|cx57	gap junction protein, alpha 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-154569229-4	chr2	154569125	154569325	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001291105, exon 1 of 7)	5' UTR (NM_001291105, exon 1 of 7)	201.0	NM_001291105	13555.0	Mm.18036	NM_007891	ENSMUSG00000027490	E2f1	E2F-1|Tg(Wnt1-cre)2Sor|mKIAA4009	E2F transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-51796573-4	chr3	51796462	51796662	+	924.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 2 of 4)	intron (NM_001004176, intron 2 of 4)	135383.0	NM_001310482	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24533259-2	chr17	24533159	24533359	+	629.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177375, intron 1 of 8)	CpG	488.0	NM_177375	328778.0	Mm.266033	NM_177375	ENSMUSG00000079657	Rab26	A830020M03Rik	RAB26, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27745795-2	chr2	27745695	27745895	+	604.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290481, intron 4 of 9)	intron (NM_001290481, intron 4 of 9)	35212.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-23411954-2	chr13	23411854	23412054	+	604.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11912.0	NM_013924	30946.0	Mm.292094	NM_013924	ENSMUSG00000036376	Abt1	-	activator of basal transcription 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-42880593-4	chr4	42880488	42880688	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6354.0	NM_177785	277773.0	Mm.212727	NM_177785	ENSMUSG00000050141	Fam205c	4931430D02|FAM205CP	family with sequence similarity 205, member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-130730379-4	chr3	130730278	130730478	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026724)	promoter-TSS (NM_026724)	20.0	NM_001005859	68436.0	Mm.140568	NM_026724	ENSMUSG00000062006	Rpl34	1100001I22Rik	ribosomal protein L34	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-105922980-2	chr1	105922880	105923080	+	853.444458	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	67302.0	NR_151625	635504.0	Mm.359717	NR_151625		Gm7160	EG635504	predicted gene 7160	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85092447-2	chr12	85092347	85092547	+	974.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175198, intron 2 of 4)	intron (NM_175198, intron 2 of 4)	3168.0	NM_001361239	73422.0	Mm.311944	NM_175198	ENSMUSG00000042320	Prox2	1700058C01Rik	prospero homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-26643429-4	chr14	26643322	26643522	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007479, intron 1 of 5)	intron (NM_007479, intron 1 of 5)	5288.0	NM_007479	11843.0	Mm.297768	NM_007479	ENSMUSG00000021877	Arf4	AA407803	ADP-ribosylation factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-65661956-3	chr3	65661857	65662057	+	849.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	2669.0	NR_106200	102465905.0		NR_106200	ENSMUSG00000098944	Mir8120	Gm27637|mmu-mir-8120	microRNA 8120	ncRNA	2.03141560175575	2.1911744708707	1.99723539870512	1.09053474709545	1.44947206031258	1.95269937820528	2.49796375425582	1.09410051917999	-0.0591980121671178	0.958640731167469	0.998431161219273
Merged-chr12-36205941-3	chr12	36205855	36206055	+	856.7666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	12263.0	NM_027699	71156.0	Mm.250837	NM_027699	ENSMUSG00000020545	Lrrc72	1700108M19Rik|4933421E18Rik	leucine rich repeat containing 72	protein-coding	2.72145057872121	1.64687794728619	2.55996202807005	2.48266663506889	1.90064663003875	1.1532081139287	1.12354706296099	1.34708460915271	-2.68370510910403	0.0139326906082995	0.13807633969029
Merged-chr6-65590346-4	chr6	65590269	65590469	+	969.18335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001001495)	promoter-TSS (NM_001001495)	-29.0	NM_001001495	414084.0	Mm.117558	NM_001001495	ENSMUSG00000044162	Tnip3	9030611K07Rik|ABIN-3|LIND	TNFAIP3 interacting protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-45656027-1	chr17	45655927	45656127	+	760.0	f1_c57bl6.idr	intron (NM_001013767, intron 1 of 21)	intron (NM_001013767, intron 1 of 21)	3282.0	NM_001013767	268958.0	Mm.426026	NM_001013767	ENSMUSG00000058626	Capn11	-	calpain 11	protein-coding	2.14769929512959	1.70412816226487	0.482679808913024	0.710983529266226	0.448250478942532	0.504071889784327	0.486599265643285	0.915067891554838	-3.53311162435541	0.0355801313667539	0.267140435630985
Merged-chr18-56727426-3	chr18	56727319	56727519	+	902.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010721, intron 1 of 10)	intron (NM_010721, intron 1 of 10)	19606.0	NM_010721	16906.0	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-31871438-4	chr11	31871327	31871527	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001290676, exon 1 of 9)	5' UTR (NM_001290676, exon 1 of 9)	487.0	NM_026252	67579.0	Mm.339792	NM_026252	ENSMUSG00000020300	Cpeb4	Cpe-bp4|Cpeb-4|mCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding	3.54746890026071	3.05913336390876	2.95205548044625	3.59955506884562	3.89385959060719	3.61379720184972	4.08953771037198	3.0003104895184	0.586242384814904	0.292459019014555	0.796878874368653
Merged-chr19-34539613-1	chr19	34539513	34539713	+	565.0	f0_balb.idr	Intergenic	Intergenic	-11081.0	NM_008332	15958.0	Mm.2036	NM_008332	ENSMUSG00000045932	Ifit2	AV302338|Ifi54|P54	interferon-induced protein with tetratricopeptide repeats 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-120966710-2	chr4	120966610	120966810	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6612.0	NR_105982	102465614.0		NR_105982	ENSMUSG00000106436	Mir7015	mmu-mir-7015	microRNA 7015	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-34762931-1	chr8	34762831	34763031	+	570.0	f0_c57.idr	Intergenic	Intergenic	-44679.0	NM_176933	319520.0	Mm.170276	NM_176933	ENSMUSG00000031530	Dusp4	2700078F24Rik|AI844617|BB104621|E130306H24Rik|MKP2	dual specificity phosphatase 4	protein-coding	2.01691215635098	2.80929128872723	1.94962661634827	1.58767608543371	1.80953853616641	2.29381590933668	1.43912866604702	1.40095989473682	-0.998602714305693	0.318494164505889	0.821951596143819
Merged-chr2-90846526-2	chr2	90846426	90846626	+	753.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001317241)	promoter-TSS (NM_001317241)	-629.0	NM_001317241	56428.0	Mm.28023	NM_019758	ENSMUSG00000027282	Mtch2	2310034D24Rik|4930539J07Rik|HSPC032	mitochondrial carrier 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-74027461-2	chr13	74027361	74027561	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_182839, intron 2 of 3)	intron (NM_182839, intron 2 of 3)	18042.0	NM_182839	72948.0	Mm.39752	NM_182839	ENSMUSG00000021573	Tppp	2900041A09Rik|AI849835	tubulin polymerization promoting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96278188-4	chr3	96278095	96278295	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	8495.0	NM_175666	319189.0	Mm.297655	NM_175666	ENSMUSG00000105827	Hist2h2bb	H2b-616	histone cluster 2, H2bb	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-39779406-4	chr6	39779336	39779536	+	894.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31500.0	NM_010270	14548.0	Mm.377071	NM_010270	ENSMUSG00000029918	Mrps33	AI841153|CGI-139|Gdap3|MRP-S33|PTD003	mitochondrial ribosomal protein S33	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-66599793-4	chr9	66599710	66599910	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6695.0	NM_001302116	235441.0	Mm.32465	NM_144937	ENSMUSG00000032376	Usp3	AA409661|BC017156	ubiquitin specific peptidase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-87804245-3	chr3	87804165	87804365	+	915.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011832, intron 6 of 21)	intron (NM_011832, intron 6 of 21)	7314.0	NM_011832	23920.0	Mm.42041	NM_011832	ENSMUSG00000005640	Insrr	Irr	insulin receptor-related receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59646396-3	chr15	59646297	59646497	+	855.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2257.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120633653-4	chr11	120633562	120633762	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010756)	promoter-TSS (NM_010756)	-115.0	NM_010756	17134.0	Mm.268010	NM_010756	ENSMUSG00000051510	Mafg	AA545192|C630022N07Rik	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein G (avian)	protein-coding	5.11090106154958	4.27153376290169	5.10739758641022	5.31544729467012	4.6438130448212	4.62701806752016	5.24280386385738	5.22619887260119	-0.0533501200676459	0.87949235353637	0.998431161219273
Merged-chr12-55315406-4	chr12	55315306	55315506	+	881.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025373, intron 3 of 6)	B1F|SINE|Alu	-12406.0	NM_021529	59032.0	Mm.427307	NM_021529	ENSMUSG00000021022	Ppp2r3c	4930511A21Rik|5730412A08Rik|G4-1|G5pr	protein phosphatase 2, regulatory subunit B'', gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-34285430-2	chr9	34285330	34285530	+	560.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-203301.0	NM_026324	67703.0	Mm.220710	NM_026324	ENSMUSG00000032036	Kirrel3	1500010O20Rik|2900036G11Rik|NEPH2|SST4|mKIAA1867	kirre like nephrin family adhesion molecule 3	protein-coding	0.496435056633705	0.595199479395063	0.563217068518478	0.259769454587994	0.502712929397481	0.602369487152628	0.57029749010065	0.260490569687131	0.0403788580884963	0.981458335907578	1
Merged-chr16-21644048-5	chr16	21643965	21644165	+	855.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081366, intron 46 of 46)	intron (NM_001081366, intron 46 of 46)	50600.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-33077304-6	chr13	33077236	33077436	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A1|LTR|ERVL-MaLR	-6767.0	NM_173052	282663.0	Mm.314490	NM_173052	ENSMUSG00000051029	Serpinb1b	6330533H24Rik|EIB|Serpin1b1|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 1b	protein-coding	5.39543309499396	5.2565062470595	5.45678176967354	4.34368397112129	4.57038990533174	3.73533711749316	4.55212461986212	4.51907776709234	-0.9555282607309	0.012503136370967	0.127489487404132
Merged-chr19-5834001-4	chr19	5833917	5834117	+	883.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_131212, exon 1 of 1)	non-coding (NR_131212, exon 1 of 1)	11461.0	NR_131212	66961.0	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152619069-2	chr1	152618969	152619169	+	812.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346119, intron 2 of 17)	intron (NM_001346119, intron 2 of 17)	6148.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141275982-2	chr7	141275882	141276082	+	677.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114322, intron 3 of 14)	intron (NM_001114322, intron 3 of 14)	804.0	NM_028069	72040.0	Mm.29080	NM_028069	ENSMUSG00000025497	Cdhr5	1810074H01Rik|AI481143|Mucdhl|Mupcdh	cadherin-related family member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-45703477-3	chr17	45703373	45703573	+	844.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17124.0	NM_026732	68463.0	Mm.379158	NM_026732	ENSMUSG00000023939	Mrpl14	1110006I11Rik|AI846816|MRP-L32|Rpml32	mitochondrial ribosomal protein L14	protein-coding	2.1094738639703	2.01997177668011	2.47047930458612	2.12712794273557	2.12732380471016	1.24500811503475	1.21962936137189	2.02887422191905	-1.21424699495807	0.245393660994912	0.744621432629477
Merged-chr4-43875596-4	chr4	43875488	43875688	+	956.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016678)	promoter-TSS (NM_016678)	58.0	NM_016678	53614.0	Mm.331573	NM_016678	ENSMUSG00000028476	Reck	St15|mRECK	reversion-inducing-cysteine-rich protein with kazal motifs	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171230368-3	chr1	171230270	171230470	+	872.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010185, intron 3 of 4)	RMER20A|LTR|ERVK	3979.0	NM_010185	14127.0	Mm.22673	NM_010185	ENSMUSG00000058715	Fcer1g	AI573376|CD23|FcR-gamma|FcR[g]|FcRgamma|Fce1g|FcepsilonRI|Ly-50	Fc receptor, IgE, high affinity I, gamma polypeptide	protein-coding	0.83532946611332	1.46345176775076	0.901282867528097	1.54013785438034	1.73693944661965	2.44735490016915	0.907935740734487	2.91713656662525	2.7168960304911	0.0287724834301659	0.230141504130087
Merged-chr13-98997234-4	chr13	98997125	98997325	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12660.0	NM_027064	69382.0	Mm.45466	NM_027064	ENSMUSG00000045022	1700024P04Rik	H2bl1|Subh2bv	RIKEN cDNA 1700024P04 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-31084137-4	chr3	31084032	31084232	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MamRep605|LTR?|LTR?	-10926.0	NM_001039090	20482.0	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80121753-3	chr10	80121627	80121827	+	866.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301853, intron 1 of 8)	PB1D10|SINE|Alu	5924.0	NM_001301854	20869.0	Mm.44231	NM_011492	ENSMUSG00000003068	Stk11	AA408040|Lkb1|Par-4|R75140	serine/threonine kinase 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-90721239-2	chr6	90721139	90721339	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356440, intron 1 of 13)	intron (NM_001356440, intron 1 of 13)	-4710.0	NM_001134383	232227.0	Mm.196943	NM_182784	ENSMUSG00000034312	Iqsec1	AW561907|BC026481|BRAG2|D6Ertd349e|cI-43	IQ motif and Sec7 domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-5528129-2	chr8	5528029	5528229	+	704.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-422842.0	NM_011388	20494.0	Mm.3500	NM_011388	ENSMUSG00000023073	Slc10a2	9130221J18Rik|AI605518|ASBT|IBAT|ISBT	solute carrier family 10, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129898330-4	chr2	129898236	129898436	+	822.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14|LTR|ERV1	-96877.0	NR_029452	654409.0	Mm.305555	NR_029452		Stk35os1	4932416H05Rik	serine/threonine kinase 35, opposite strand 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5877272-2	chr19	5877172	5877372	+	601.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361973)	promoter-TSS (NM_001361973)	-550.0	NM_001361973	107375.0	Mm.5323	NM_134154	ENSMUSG00000024818	Slc25a45	AW491445	solute carrier family 25, member 45	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-105988299-4	chr1	105988185	105988385	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151625, intron 2 of 2)	intron (NR_151625, intron 2 of 2)	1997.0	NR_151625	635504.0	Mm.359717	NR_151625		Gm7160	EG635504	predicted gene 7160	ncRNA	4.97820502688424	4.36078770001145	4.00758849172989	5.11858480715126	4.30160508204406	4.68500461476125	4.53969017445993	5.25396590067381	0.0535184391682421	0.893806560837242	0.998431161219273
Merged-chr10-58446024-3	chr10	58445910	58446110	+	959.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011240)	promoter-TSS (NM_011240)	-842.0	NM_011240	19386.0	Mm.431695	NM_011240	ENSMUSG00000003226	Ranbp2	A430087B05Rik|AI256741|NUP358	RAN binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90557297-6	chr2	90557191	90557391	+	774.805542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	L1MC4a|LINE|L1	23356.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	-0.499940950918087	-0.487518524828365	0.0891561271406926	-0.494726023626598	-0.499164980458282	-0.486601867615524	0.100277611126392	-0.494177430718284	0.0410194320726077	0.98816738256539	1
Merged-chr18-9504335-5	chr18	9504220	9504420	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54166.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	2.37258995851272	2.75375473321391	2.06709972153504	2.49660181018958	2.56350186783836	1.75430409124751	2.23144043339758	2.60301498375961	-0.235779644554945	0.775331280272841	0.998431161219273
Merged-chr7-28446655-3	chr7	28446584	28446784	+	851.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_022024, exon 7 of 7)	3' UTR (NM_022024, exon 7 of 7)	-5301.0	NM_030562	80749.0	Mm.483073	NM_030562	ENSMUSG00000030600	Lrfn1	BC004018|SALM2|Semo1	leucine rich repeat and fibronectin type III domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-130087543-2	chr4	130087439	130087639	+	741.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_028266, intron 55 of 69)	intron (NM_028266, intron 55 of 69)	-20017.0	NM_026441	67898.0	Mm.20818	NM_026441	ENSMUSG00000028779	Pef1	2600002E23Rik|Peflin	penta-EF hand domain containing 1	protein-coding	2.32436882951056	1.53627640266564	2.0005149226803	2.45166508479662	1.86259811462578	2.44587148327711	1.26078804519476	2.07810440438786	-0.369977807086411	0.711157315361671	0.998431161219273
Merged-chr7-127934748-2	chr7	127934648	127934848	+	643.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001319147, intron 10 of 14)	intron (NM_001319147, intron 10 of 14)	-4635.0	NM_133351	76560.0	Mm.5875	NM_133351	ENSMUSG00000030800	Prss8	2410039E18Rik|AI313909|C79772|CAP1|fr|mCAP1	protease, serine 8 (prostasin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-23909886-2	chr18	23909786	23909986	+	950.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44802.0	NM_027007	69256.0	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-33662953-1	chr8	33662853	33663053	+	1000.0	f1_c57bl6.idr	intron (NM_010344, intron 1 of 12)	intron (NM_010344, intron 1 of 12)	9715.0	NM_010344	14782.0	Mm.283573	NM_010344	ENSMUSG00000031584	Gsr	AI325518|D8Ertd238e|Gr-1|Gr1	glutathione reductase	protein-coding	1.278764727796	1.70060373893829	0.998277886484931	1.70239818178026	1.62677779741644	1.71366138566849	1.38013527673757	1.48141664052649	0.349646159590807	0.764979891600466	0.998431161219273
Merged-chr13-62383177-4	chr13	62383067	62383267	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162910)	promoter-TSS (NM_001162910)	7.0	NM_001162910	100041979.0	Mm.445930	NM_001162910	ENSMUSG00000094942	Gm3604	-	predicted gene 3604	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-31214602-3	chr6	31214495	31214695	+	822.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110469, intron 1 of 3)	URR1B|DNA|hAT-Charlie	3879.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-83900877-2	chr8	83900771	83900971	+	558.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_181039, exon 1 of 23)	5' UTR (NM_181039, exon 1 of 23)	773.0	NM_181039	330814.0	Mm.260733	NM_181039	ENSMUSG00000013033	Adgrl1	2900070I05Rik|AI182398|CLIBA|Lec2|Lphn1|mKIAA0821	adhesion G protein-coupled receptor L1	protein-coding	2.10947284928905	2.11576531614507	2.67613931489844	1.22044486700215	2.12778185528752	1.28499805171275	2.84863075727633	2.12373884817	0.193247065502931	0.85203442322679	0.998431161219273
Merged-chr3-9752430-3	chr3	9752311	9752511	+	825.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053182, intron 2 of 7)	intron (NM_053182, intron 2 of 7)	81268.0	NM_053182	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117990753-2	chr11	117990653	117990853	+	763.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_151726, intron 1 of 9)	intron (NR_151726, intron 1 of 9)	3896.0	NR_151726	74451.0	Mm.28864	NM_133757	ENSMUSG00000017715	Pgs1	2610019F11Rik|4933424M23Rik|SAF	phosphatidylglycerophosphate synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-29684326-2	chr19	29684226	29684426	+	587.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13615.0	NM_029993	77836.0	Mm.138437	NM_029993	ENSMUSG00000024806	Mlana	A930034P04Rik|Mart1	melan-A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-64070133-2	chr14	64070033	64070233	+	768.099976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15277.0	NM_001081063	71037.0	Mm.19977	NM_001081063	ENSMUSG00000034623	Prss55	4933401F05Rik	protease, serine 55	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-40455606-7	chr9	40455512	40455712	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172768, exon 1 of 20)	exon (NM_172768, exon 1 of 20)	152.0	NM_172768	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	-0.0470819023817998	0.0166797108705998	0.268942999823344	-0.181403585994594	-0.186406739983347	0.44088950461821	-0.17684368577768	-0.180784495577823	-0.104017559692419	0.963002638130963	1
Merged-chr14-93654007-3	chr14	93653954	93654154	+	927.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081377, intron 2 of 4)	LTR50|LTR|ERVL	236615.0	NM_001271800	211712.0	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding	0.621122257327972	1.50340937868143	0.64913268979623	1.38668535024422	0.623773911569269	0.665320988435671	1.45295000486675	1.49657174611494	0.0840656401464738	0.958690162717723	0.998431161219273
Merged-chr3-107710175-2	chr3	107710075	107710275	+	563.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MCa|LINE|L1	-13615.0	NM_145542	229709.0	Mm.220328	NM_145542	ENSMUSG00000027893	Ahcyl1	1110034F20Rik|AA409031|AA414901|Ahcy-rs3|DCAL|Irbit	S-adenosylhomocysteine hydrolase-like 1	protein-coding	-0.391540557385216	-0.551116623760415	-0.735338088654689	-0.737486607048537	-0.383677526578036	-0.7319046940708	-0.734722012906535	-0.737112004783417	-0.504301507439974	0.857945703625103	1
Merged-chr9-78050572-4	chr9	78050487	78050687	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-1371.0	NM_008103	14531.0	Mm.1400	NM_008103	ENSMUSG00000023333	Gcm1	GCMa|Gcm-rs2|Gcm1-rs1|glide	glial cells missing homolog 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-52372965-3	chr12	52372872	52373072	+	933.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	107637.0	NR_136881	102638611.0	Mm.363799	NR_136881	ENSMUSG00000111982	Gm35135	-	predicted gene, 35135	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-6639774-3	chr13	6639679	6639879	+	806.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019703, intron 1 of 21)	B1_Mur3|SINE|Alu	8992.0	NM_019703	56421.0	Mm.273874	NM_019703	ENSMUSG00000021196	Pfkp	1200015H23Rik|9330125N24Rik|ATP-PFK|PFK-C|PFK-P	phosphofructokinase, platelet	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-31291071-4	chr17	31290962	31291162	+	972.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4421.0	NM_153062	224674.0	Mm.311395	NM_153062	ENSMUSG00000024036	Slc37a1	G3PP	solute carrier family 37 (glycerol-3-phosphate transporter), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-11912912-4	chr19	11912812	11913012	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172635, intron 1 of 18)	CpG	513.0	NM_172635	225929.0	Mm.42711	NM_172635	ENSMUSG00000046139	Patl1	AV312086|Pat1b	protein associated with topoisomerase II homolog 1 (yeast)	protein-coding	3.60505059878453	3.17511928852482	2.27021882389678	3.59790959089952	4.03115010146798	2.92930483981271	4.24493698815668	3.810843660929	0.858206174726758	0.147443195825963	0.597466522728415
Merged-chr19-40708824-1	chr19	40708724	40708924	+	564.0	f0_balb.idr	intron (NM_009848, intron 1 of 9)	intron (NM_009848, intron 1 of 9)	49054.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-74815949-3	chr13	74815848	74816048	+	818.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7188.0	NM_001301153	12380.0	Mm.29163	NM_009817	ENSMUSG00000021585	Cast	-	calpastatin	protein-coding	-1.8429182434137	-1.8129848525291	-1.82203695700074	-1.54461076807193	-1.84081697472045	-1.81102322372834	-1.81998775896484	-1.82814164409203	-1.43114970378833	0.684630132144154	1
Merged-chr11-110436307-3	chr11	110436214	110436414	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356352, intron 1 of 11)	MER20|DNA|hAT-Charlie	37212.0	NM_001356353	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99713568-2	chr15	99713468	99713668	+	593.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_031842, exon 13 of 13)	3' UTR (NM_031842, exon 13 of 13)	-4025.0	NM_010271	14555.0	Mm.252391	NM_010271	ENSMUSG00000023019	Gpd1	AI747587|Gdc-1|Gdc1|mKIAA4010	glycerol-3-phosphate dehydrogenase 1 (soluble)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-30593348-4	chr14	30593226	30593426	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	16984.0	NM_001310682	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-104511964-4	chr3	104511860	104512060	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310698)	promoter-TSS (NM_001310698)	-42.0	NM_001310698	269473.0	Mm.34855	NM_001025067	ENSMUSG00000032913	Lrig2	4632419I10Rik|BB096938|LIG-2	leucine-rich repeats and immunoglobulin-like domains 2	protein-coding	5.97585692236124	6.24798182497776	6.26416127684131	6.25702768802411	5.99886033767367	5.90051134780805	6.1949087443435	6.2014644946958	-0.116604054406833	0.592589386692578	0.970302164516722
Merged-chr4-134095136-4	chr4	134095055	134095255	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013706)	promoter-TSS (NM_013706)	-82.0	NM_013706	23833.0	Mm.24130	NM_013706	ENSMUSG00000000682	Cd52	AI463198|B7|B7-Ag|CAMPATH-1|CLS1|MB7	CD52 antigen	protein-coding	4.96567706081805	3.82435481602499	5.53317523259799	3.7466793361115	4.493895991799	2.97448199993048	4.52239035862299	4.53294076700853	-0.583173739597691	0.259208250083666	0.75927260363863
Merged-chr17-37028350-1	chr17	37028250	37028450	+	629.0	f0_balb.idr	Intergenic	Intergenic	-4952.0	NM_010814	17441.0	Mm.210857	NM_010814	ENSMUSG00000076439	Mog	B230317G11Rik	myelin oligodendrocyte glycoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-10496203-4	chr16	10496131	10496331	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302619, intron 2 of 19)	intron (NM_001302619, intron 2 of 19)	6450.0	NM_001243761	12265.0	Mm.249560	NM_007575	ENSMUSG00000022504	Ciita	C2ta|EG669998|Gm9475|Mhc2ta	class II transactivator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-67301854-1	chr15	67301754	67301954	+	765.666687	f0_balb.idr	intron (NR_045140, intron 5 of 8)	intron (NR_045140, intron 5 of 8)	75085.0	NR_045140	69334.0	Mm.63770	NR_045140	ENSMUSG00000102069	1700012I11Rik	-	RIKEN cDNA 1700012I11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-88567369-4	chr1	88567255	88567455	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER20B|LTR|ERVK	15838.0	NR_037971	100503197.0	Mm.99352	NR_037971	ENSMUSG00000100798	Gm19589	-	predicted gene, 19589	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-113180446-4	chr7	113180368	113180568	+	951.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2c|LINE|L2	-26997.0	NM_001243048	11865.0	Mm.33970	NM_007489	ENSMUSG00000055116	Arntl	Arnt3|BMAL1b|Bmal1|MOP3|bHLHe5|bmal1b'	aryl hydrocarbon receptor nuclear translocator-like	protein-coding	0.595623860317975	0.280811120276584	0.776217468448158	0.41445208164033	0.504418035646405	0.454219911197578	0.569983762104117	0.273003165221682	-0.597384900895553	0.732971170351948	1
Merged-chr3-90709691-2	chr3	90709591	90709791	+	681.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13970.0	NM_001281852	20202.0	Mm.2128	NM_009114	ENSMUSG00000056071	S100a9	60B8Ag|AW546964|BEE22|Cagb|GAGB|L1Ag|MRP14|p14	S100 calcium binding protein A9 (calgranulin B)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-41073586-4	chr4	41073505	41073705	+	889.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24578.0	NM_016689	11828.0	Mm.34043	NM_016689	ENSMUSG00000028435	Aqp3	AQP-2	aquaporin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44853880-2	chr7	44853780	44853980	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290694, intron 3 of 4)	intron (NM_001290694, intron 3 of 4)	-3266.0	NM_021549	59047.0	Mm.238254	NM_021549	ENSMUSG00000002963	Pnkp	1810009G08Rik|PNK	polynucleotide kinase 3'- phosphatase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-127207262-5	chr1	127207048	127207248	+	852.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145128, intron 1 of 17)	intron (NM_145128, intron 1 of 17)	2162.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	2.01638821538127	1.97159138515904	1.26354144927131	0.829508727790296	1.7380863432954	1.32081447835855	0.84779447643729	0.832024313257134	-1.20380619011155	0.382620742588236	0.873750222606329
Merged-chr16-32672443-3	chr16	32672335	32672535	+	988.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347185)	promoter-TSS (NM_001347185)	-719.0	NM_001347185	51789.0	Mm.251115	NM_016788	ENSMUSG00000022791	Tnk2	Ack|Ack-1|Ack1|Cdgip|Pyk1	tyrosine kinase, non-receptor, 2	protein-coding	-0.033186819003768	0.437739278969924	0.0362555634463992	-0.296258266109594	-0.301182532719936	-0.287239228378723	-0.291777625103286	-0.295649525631201	-3.68609140731146	0.120303330418445	1
Merged-chr10-80150473-3	chr10	80150380	80150580	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347117, intron 2 of 7)	CpG-1261	798.0	NM_001305799	59090.0	Mm.143813	NM_021565	ENSMUSG00000035621	Midn	3000003C15Rik	midnolin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-35026077-4	chr7	35025972	35026172	+	992.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008820, intron 11 of 14)	intron (NM_008820, intron 11 of 14)	30494.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-67458084-4	chr7	67457961	67458161	+	960.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC3|LINE|L1	-85203.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-148074751-3	chr4	148074654	148074854	+	720.194458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	13310.0	NM_009642	11610.0	Mm.46247	NM_009642	ENSMUSG00000029007	Agtrap	3300002E14Rik|AT1R|Atrap|D4Wsu124e	angiotensin II, type I receptor-associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-74519523-2	chr10	74519423	74519623	+	658.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001142736, intron 25 of 32)	(TA)n|Simple_repeat|Simple_repeat	-447654.0	NM_010311	14687.0	Mm.32595	NM_010311	ENSMUSG00000040009	Gnaz	AI847979|Gz	guanine nucleotide binding protein, alpha z subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-30609674-2	chr15	30609574	30609774	+	742.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355502, intron 3 of 21)	ORR1A2|LTR|ERVL-MaLR	-429452.0	NR_045186	73784.0	Mm.66947	NR_045186	ENSMUSG00000115474	4930430F21Rik	-	RIKEN cDNA 4930430F21 gene	ncRNA	0.259692637344711	0.602715036406966	0.138201241996329	0.529973167673947	0.484020560520355	0.144405054523879	0.139315206672916	0.420606579254534	-0.665045447306919	0.729444531273551	1
Merged-chr11-69088709-6	chr11	69088670	69088870	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009497, intron 1 of 4)	CpG	242.0	NM_009497	22318.0	Mm.28643	NM_009497	ENSMUSG00000020894	Vamp2	Syb-2|Syb2|Vamp-2|sybII	vesicle-associated membrane protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67585547-2	chr10	67585447	67585647	+	920.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13588.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-96981724-2	chr11	96981624	96981824	+	996.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4036.0	NM_001080964	78912.0	Mm.491183	NM_030220	ENSMUSG00000018678	Sp2	4930480I16Rik|mKIAA0048	Sp2 transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-107955366-2	chr13	107955208	107955408	+	563.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65244.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	-0.564204100125437	-0.5537375857914	-0.557178511195303	0.051188971205838	-0.300346812042336	-0.552960372987486	-0.38095405819451	-0.559363493357157	-0.790071847054458	0.766545325758714	1
Merged-chr9-106889370-2	chr9	106889288	106889488	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029103, intron 3 of 3)	intron (NM_029103, intron 3 of 3)	-2388.0	NM_175402	109095.0	Mm.431589	NM_175402	ENSMUSG00000074102	Rbm15b	1810017N16Rik	RNA binding motif protein 15B	protein-coding	1.84209994290808	0.962222411372709	0.920754455532296	2.90897111760728	2.10931066589197	0.971203501185256	0.930140852131691	3.62893665243357	0.930787293565284	0.716592691468831	0.998431161219273
Merged-chr5-35034921-2	chr5	35034821	35035021	+	640.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6588.0	NM_019447	54426.0	Mm.27369	NM_019447	ENSMUSG00000029102	Hgfac	HGFA	hepatocyte growth factor activator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-84698689-4	chr12	84698541	84698741	+	917.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001033334, exon 1 of 4)	5' UTR (NM_001033334, exon 1 of 4)	166.0	NM_001033334	627191.0	Mm.152484	NM_001033334	ENSMUSG00000071234	Syndig1l	DSPC1|Gm261|SynDIG2|Tmem90a	synapse differentiation inducing 1 like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19173111-3	chr7	19172989	19173189	+	850.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3332.0	NM_001347582	72205.0	Mm.154121	NM_028153	ENSMUSG00000040811	Eml2	1600029N02Rik|EMAP-2	echinoderm microtubule associated protein like 2	protein-coding	1.43425864970947	2.20153040626817	0.595956909908166	0.582022066007465	0.774419728197806	1.43726294058348	0.599873324288481	0.82014217600176	-1.5386766838635	0.30475343526789	0.806210138838192
Merged-chr18-36737722-2	chr18	36737622	36737822	+	604.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_028036, exon 4 of 12)	exon (NM_028036, exon 4 of 12)	2652.0	NM_028036	71983.0	Mm.135188	NM_028036	ENSMUSG00000006850	Tmco6	2410015B03Rik	transmembrane and coiled-coil domains 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-64077723-3	chr7	64077668	64077868	+	919.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-76067.0	NM_001039104	17364.0	Mm.38875	NM_018752	ENSMUSG00000030523	Trpm1	4732499L03Rik|AI606771|Ltrpc1|Mlsn1	transient receptor potential cation channel, subfamily M, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-34442233-2	chr15	34442133	34442333	+	669.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163485, intron 3 of 4)	intron (NM_001163485, intron 3 of 4)	992.0	NM_009083	19946.0	Mm.358632	NM_009083	ENSMUSG00000058600	Rpl30	-	ribosomal protein L30	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-39408864-4	chr1	39408767	39408967	+	995.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018775, intron 2 of 19)	intron (NM_018775, intron 2 of 19)	41016.0	NM_001252218	114641.0	Mm.379302	NM_053257	ENSMUSG00000073702	Rpl31	Dts	ribosomal protein L31	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-80085433-1	chr15	80085333	80085533	+	541.0	f1_balb.idr	Intergenic	B1_Mus2|SINE|Alu	-2027.0	NM_013762	27367.0	Mm.290771	NM_013762	ENSMUSG00000060036	Rpl3	F2|J1	ribosomal protein L3	protein-coding	-0.700064241511417	-0.186671140929496	-0.692852367725508	-0.695563882069579	-0.699394869705802	-0.177296101845517	-0.692077155152847	-0.695090216270211	0.0394491945098347	0.989215944639676	1
Merged-chr8-126628826-4	chr8	126628750	126628950	+	933.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35414.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	2.54372481483219	2.21124220030268	3.47177943669102	2.68327855124567	3.23883773984416	2.9996099788111	3.35559408279872	3.09792697028313	0.634595714139778	0.342984047633168	0.843839221497487
Merged-chr1-8780487-2	chr1	8780387	8780587	+	833.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027671, intron 6 of 20)	L1_Mus4|LINE|L1	519390.0	NM_001290393	71096.0	Mm.336395	NM_027671	ENSMUSG00000025909	Sntg1	4933426D16Rik|G1SYN|SYN4	syntrophin, gamma 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-34769554-2	chr11	34769454	34769654	+	567.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_033374, intron 1 of 51)	intron (NM_033374, intron 1 of 51)	14351.0	NM_033374	94176.0	Mm.380679	NM_033374	ENSMUSG00000020143	Dock2	AI662014|AW122239|CED-5|Hch|MBC	dedicator of cyto-kinesis 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-43259588-2	chr17	43259488	43259688	+	841.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR11A2|LTR|ERVK	-10759.0	NM_133776	77596.0	Mm.159950	NM_133776	ENSMUSG00000041293	Adgrf1	5031409J19Rik|Gpr110|KPG_009	adhesion G protein-coupled receptor F1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-93264840-4	chr5	93264779	93264979	+	919.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2694.0	NM_007635	12452.0	Mm.3527	NM_007635	ENSMUSG00000029385	Ccng2	-	cyclin G2	protein-coding	0.839041311942324	1.10678966617156	0.556171397362044	0.53819289457585	0.750322377643478	0.58445165921657	0.380044288932223	0.373883801484942	-1.55553715670618	0.354812879374141	1
Merged-chr1-33909936-2	chr1	33909836	33910036	+	650.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001276764, intron 2 of 102)	intron (NM_001276764, intron 2 of 102)	1711.0	NM_001276764	13518.0	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81007281-2	chr15	81007181	81007381	+	592.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357669, intron 6 of 20)	intron (NM_001357669, intron 6 of 20)	29516.0	NM_134091	105835.0	Mm.274943	NM_134091	ENSMUSG00000042303	Sgsm3	1810012I01Rik|AI428557|BB175482|Cip85|R75178|RUSC3|Rutbc3	small G protein signaling modulator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-91143607-2	chr10	91143507	91143707	+	562.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19644.0	NM_133668	18674.0	Mm.298	NM_133668	ENSMUSG00000061904	Slc25a3	5730556H19Rik|PTP|Phc	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-140115772-4	chr7	140115654	140115854	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053119, intron 1 of 7)	intron (NM_053119, intron 1 of 7)	669.0	NM_053119	93747.0	Mm.24452	NM_053119	ENSMUSG00000025465	Echs1	C80529	enoyl Coenzyme A hydratase, short chain, 1, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-155812974-2	chr4	155812880	155813080	+	947.833374	f0_balb.idr|f0_c57.idr	intron (NM_207678, intron 1 of 10)	CpG	491.0	NM_207678	56036.0	Mm.23492	NM_018856	ENSMUSG00000029068	Ccnl2	1700010A01Rik|1810019L15Rik|2010319M22Rik|AA409936|AW261738|Ania-6b|HCLA-150|Pcee|SB138	cyclin L2	protein-coding	4.66777833276009	4.52682794117555	4.48725913135755	3.29641627591469	4.19244067123827	4.80234951862731	4.30581601937496	4.34142970452712	0.107183595253409	0.805315639860802	0.998431161219273
Merged-chr6-125415284-1	chr6	125415184	125415384	+	540.0	f1_balb.idr	Intergenic	B1_Mur2|SINE|Alu	-34780.0	NM_198604	213522.0	Mm.333396	NM_198604	ENSMUSG00000038167	Plekhg6	BC026778|Gm155	pleckstrin homology domain containing, family G (with RhoGef domain) member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-112292645-2	chr13	112292537	112292737	+	649.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001168404, intron 2 of 7)	intron (NM_001168404, intron 2 of 7)	4119.0	NM_001168404	77318.0	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24708836-4	chr17	24708761	24708961	+	881.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-1208.0	NM_145396	213773.0	Mm.100353	NM_145396	ENSMUSG00000040688	Tbl3	9430070M15Rik	transducin (beta)-like 3	protein-coding	4.99915906126646	5.07899041468199	4.20440855637631	4.74009780605032	3.91457312577972	3.9395932659333	3.71843269746273	3.68479898950302	-1.27352348048556	0.00189201374070305	0.0320626848318576
Merged-chr15-99772528-4	chr15	99772480	99772680	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028015)	promoter-TSS (NM_028015)	-65.0	NM_028015	71949.0	Mm.390821	NM_028015	ENSMUSG00000023021	Cers5	2310081H14Rik|AU045339|AW544927|Lass5|Trh4	ceramide synthase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-39001327-3	chr1	39001231	39001431	+	763.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13517.0	NM_026850	68833.0	Mm.28121	NM_026850	ENSMUSG00000026078	Pdcl3	1110061A19Rik|C80025|Viaf1	phosducin-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32079586-2	chr2	32079486	32079686	+	680.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_151493, intron 2 of 5)	intron (NR_151493, intron 2 of 5)	4119.0	NM_175511	241303.0	Mm.250441	NM_175511	ENSMUSG00000050592	Fam78a	A130092J06Rik	family with sequence similarity 78, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-33126930-2	chr1	33126830	33127030	+	547.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME2|LINE|L1	542864.0	NM_008922	19076.0	Mm.27705	NM_008922	ENSMUSG00000026134	Prim2	AI323589	DNA primase, p58 subunit	protein-coding	-2.18361151404719	-2.02201993626881	-2.16403530460334	-2.1710062446989	-2.18164157430194	-2.15370992785044	-2.16211418110791	-2.16975844975469	-0.683654500252594	0.846597994014493	1
Merged-chr2-50984014-4	chr2	50983913	50984113	+	638.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	74329.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-90259535-3	chr9	90259440	90259640	+	703.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 1 of 12)	intron (NM_194334, intron 1 of 12)	11229.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-116160293-4	chr9	116160243	116160443	+	932.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009371, intron 1 of 7)	intron (NM_009371, intron 1 of 7)	15020.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	1.33267017651452	1.14994161961189	1.70039621096478	2.14413258193336	1.20925479101681	1.15725903195045	0.902525374868262	1.54255854353064	-1.50256114150553	0.223442683919597	0.714791840691861
Merged-chr5-112355673-4	chr5	112355580	112355780	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001039228, exon 1 of 1)	exon (NM_001039228, exon 1 of 1)	353.0	NM_001039228	625424.0	Mm.389677	NM_001039228	ENSMUSG00000051503	Gm6583	EG625424	predicted gene 6583	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-113016274-2	chr12	113016174	113016374	+	591.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081170, intron 1 of 23)	intron (NM_001081170, intron 1 of 23)	1766.0	NM_001291444	217893.0	Mm.35754	NM_198165	ENSMUSG00000021143	Pacs2	6720425G15Rik|AW208651|AW489976|E230011J22|Pacs1l|mKIAA0602	phosphofurin acidic cluster sorting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-42352115-4	chr6	42352074	42352274	+	936.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289618, intron 4 of 9)	intron (NM_001289618, intron 4 of 9)	2346.0	NM_001289618	22793.0	Mm.282303	NM_011777	ENSMUSG00000029860	Zyx	9530098H06Rik|R75157	zyxin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141260910-2	chr7	141260810	141261010	+	789.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081118, intron 14 of 17)	intron (NM_001081118, intron 14 of 17)	5514.0	NM_001252601	54123.0	Mm.3233	NM_016850	ENSMUSG00000025498	Irf7	-	interferon regulatory factor 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80077303-2	chr10	80077203	80077403	+	771.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359635, intron 4 of 31)	intron (NM_001359635, intron 4 of 31)	-1864.0	NM_001359636	216161.0	Mm.262102	NM_183426	ENSMUSG00000035673	Sbno2	BC019206|F730040C21|Sno|Stno	strawberry notch 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134218062-3	chr6	134217971	134218171	+	704.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 3 of 8)	intron (NM_001303102, intron 3 of 8)	-178258.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-154187717-3	chr2	154187650	154187850	+	871.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3068.0	NM_001012392	228801.0	Mm.3783	NM_153418	ENSMUSG00000027485	Bpifb1	Lplunc1	BPI fold containing family B, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-72272942-3	chr8	72272853	72273053	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32935.0	NM_007456	11767.0	Mm.290086	NM_007456	ENSMUSG00000003033	Ap1m1	AA408894|AP47|Adtm1A|Cltnm|mu1A	adaptor-related protein complex AP-1, mu subunit 1	protein-coding	4.30578100227691	4.12199291641257	3.12667741736453	4.12626485020811	4.06119178902907	4.89092147855588	4.27144996593924	4.57902058137142	0.638367300992728	0.153672729064698	0.608506494422839
Merged-chr18-69592583-4	chr18	69592484	69592684	+	881.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 8 of 19)	intron (NM_001361128, intron 8 of 19)	246424.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-40736696-2	chr19	40736584	40736784	+	804.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001304721, intron 8 of 9)	intron (NM_001304721, intron 8 of 9)	76914.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	0.430353889419847	0.117116762634414	0.11292864011791	0.109729758373461	0.438022442459465	0.659284002914483	0.113848293115685	0.378008904880779	1.86878922702587	0.370080636240212	1
Merged-chr2-45246791-4	chr2	45246676	45246876	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-129334.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-22010342-3	chr10	22010254	22010454	+	681.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15688.0	NM_011361	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-74973014-1	chr5	74972914	74973114	+	545.0	f1_c57bl6.idr	Intergenic	RLTR20C2_MM|LTR|ERVK	23820.0	NR_045866	619945.0	Mm.359372	NM_001037908	ENSMUSG00000072874	Gm6116	EG619945	predicted gene 6116	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89960635-4	chr3	89960537	89960737	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081182, intron 2 of 27)	CpG	2695.0	NM_001081182	54667.0	Mm.30455	NM_001081182	ENSMUSG00000060671	Atp8b2	Id	ATPase, class I, type 8B, member 2	protein-coding	2.47485709151188	3.27619246766787	2.6856259026558	3.08229581342326	1.92521313858919	3.12437550057779	2.57919807391756	3.09777054439101	-0.277479447352999	0.702916393313287	0.998431161219273
Merged-chr15-100129380-4	chr15	100129288	100129488	+	843.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159361, intron 2 of 37)	intron (NM_001159361, intron 2 of 37)	-25008.0	NM_172819	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-93606804-4	chr16	93606691	93606891	+	936.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1046.0	NM_007620	12408.0	Mm.26940	NM_007620	ENSMUSG00000051483	Cbr1	AW261796|CR|Cbr	carbonyl reductase 1	protein-coding	1.62696574254724	1.23607740300215	1.37786077584209	1.81769337815878	2.03861922459813	1.0131979879621	1.5383832392835	1.34904457363323	0.0592260927017158	0.960136103110656	0.998431161219273
Merged-chr13-59824658-2	chr13	59824558	59824758	+	889.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1511.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-129575239-2	chr7	129575139	129575339	+	818.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16624.0	NM_172255	207425.0	Mm.229323	NM_172255	ENSMUSG00000042055	Wdr11	2900055P10Rik|AW489876|Brwd2|mKIAA1351	WD repeat domain 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-52420498-2	chr10	52420398	52420598	+	667.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030250, intron 1 of 4)	intron (NM_030250, intron 1 of 4)	2951.0	NM_030250	52014.0	Mm.199964	NM_030250	ENSMUSG00000023068	Nus1	1600027K07Rik|AU019165|AW538011|BC003223|D10Ertd438e	NUS1 dehydrodolichyl diphosphate synthase subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-149520240-4	chr4	149520119	149520319	+	901.133301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023465, intron 1 of 4)	intron (NM_023465, intron 1 of 4)	1978.0	NM_023465	67087.0	Mm.299735	NM_023465	ENSMUSG00000028988	Ctnnbip1	1110008O09Rik|2310001I19Rik|AW457332|Catnbip1|Icat	catenin beta interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-148530679-4	chr2	148530593	148530793	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-87158.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	5.45150428974692	4.84264916826488	5.56326946171426	5.43301856345864	5.52985973067036	4.47518953457706	5.0699511003123	5.03899361421699	-0.306804903998142	0.347034797845594	0.847437850938575
Merged-chr7-135736543-4	chr7	135736432	135736632	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20153.0	NM_001081117	17345.0	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-43846384-4	chr10	43846276	43846476	+	741.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20469.0	NR_131055	71018.0	Mm.410796	NR_131055	ENSMUSG00000111342	4933404K13Rik	-	RIKEN cDNA 4933404K13 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-98629562-2	chr15	98629462	98629662	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2766.0	NM_001044741	12297.0	Mm.3544	NM_007581	ENSMUSG00000003352	Cacnb3	Beta3|CAB3|Ca(v)beta3|Cchb3	calcium channel, voltage-dependent, beta 3 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-84752874-3	chr12	84752771	84752971	+	899.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20241.0	NM_023409	67963.0	Mm.282556	NM_023409	ENSMUSG00000021242	Npc2	2700012J19Rik|AA408070|AU045843|HE1	NPC intracellular cholesterol transporter 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-47186369-2	chr13	47186269	47186469	+	722.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146042, intron 1 of 7)	intron (NM_146042, intron 1 of 7)	-7634.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-142756664-4	chr6	142756539	142756739	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009908)	promoter-TSS (NM_009908)	-47.0	NM_009908	12764.0	Mm.3820	NM_009908	ENSMUSG00000030282	Cmas	AW208911|CMPNeu5Ac|D6Bwg0250e	cytidine monophospho-N-acetylneuraminic acid synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-79618119-4	chr12	79618011	79618211	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	306622.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-22545942-4	chr16	22545829	22546029	+	962.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346673, intron 19 of 23)	intron (NM_001346673, intron 19 of 23)	-13745.0	NR_106170	102465887.0		NR_106170	ENSMUSG00000099071	Mir8095	Gm27566|mmu-mir-8095	microRNA 8095	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-25773896-4	chr14	25773778	25773978	+	771.729187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5022.0	NM_001101433	71918.0	Mm.41904	NM_001101433	ENSMUSG00000055538	Zcchc24	2310047A01Rik	zinc finger, CCHC domain containing 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-80042199-2	chr11	80042099	80042299	+	657.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	38792.0	NM_001277106	54394.0	Mm.272093	NM_018776	ENSMUSG00000017561	Crlf3	BB164954|Creme9|Cytor4	cytokine receptor-like factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-113302438-4	chr6	113302345	113302545	+	906.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_170673, intron 19 of 19)	intron (NM_170673, intron 19 of 19)	-4692.0	NM_030178	78783.0	Mm.356059	NM_030178	ENSMUSG00000001632	Brpf1	4833438B11Rik|4930540D11Rik|Brpf2	bromodomain and PHD finger containing, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-33926551-2	chr17	33926439	33926639	+	782.041626	f1_balb.idr|f1_c57bl6.idr	intron (NM_009318, intron 6 of 7)	intron (NM_009318, intron 6 of 7)	-3355.0	NM_009059	19732.0	Mm.43777	NM_009059	ENSMUSG00000041354	Rgl2	KE1.5|Rab2l|Rgt2|Rlf	ral guanine nucleotide dissociation stimulator-like 2	protein-coding	0.295028351330018	0.785333446619197	0.163112096447142	0.32421911203985	0.426331160435099	0.796605711004961	0.16448283887266	0.159152034468988	0.00757870353737564	0.996796036340008	1
Merged-chr7-35754489-4	chr7	35754374	35754574	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178704)	promoter-TSS (NM_178704)	-20.0	NM_178704	233115.0	Mm.257808	NM_178704	ENSMUSG00000043671	Dpy19l3	6030410G08|9330164H19Rik	dpy-19-like 3 (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-46961494-4	chr6	46961413	46961613	+	835.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004357, intron 15 of 23)	intron (NM_001004357, intron 15 of 23)	-282883.0	NM_025771	66797.0	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-84218742-4	chr1	84218658	84218858	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_105771)	TTS (NR_105771)	203.0	NR_105771	102465181.0		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-82016620-4	chr11	82016514	82016714	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18963.0	NM_011333	20296.0	Mm.290320	NM_011333	ENSMUSG00000035385	Ccl2	AI323594|HC11|JE|MCAF|MCP-1|MCP1|SMC-CF|Scya2|Sigje	chemokine (C-C motif) ligand 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-45543616-3	chr11	45543460	45543660	+	761.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-264523.0	NR_045876	100009664.0	Mm.415439	NR_045876		F630206G17Rik	-	RIKEN cDNA F630206G17 gene	ncRNA	0.502594589166986	0.533614341345582	0.721020915495014	0.515749178091871	1.45109666913587	1.08423954704724	1.16093449038949	0.860097522298662	3.85868450741584	0.0202959099575191	0.181183279516603
Merged-chr2-131988033-2	chr2	131987933	131988133	+	649.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1|SINE|Alu	36996.0	NM_001278520	26434.0	Mm.180750	NM_023043	ENSMUSG00000027338	Prnd	AI450264|Dpl|PrPLP|doppel	prion like protein doppel	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-93950713-2	chr15	93950613	93950813	+	819.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-23602.0	NR_045737	77248.0	Mm.410768	NR_045737	ENSMUSG00000116360	9430014N10Rik	-	RIKEN cDNA 9430014N10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-56989696-4	chr18	56989603	56989803	+	918.229126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14324.0	NM_029909	77422.0	Mm.256874	NM_029909	ENSMUSG00000024592	C330018D20Rik	AU018666	RIKEN cDNA C330018D20 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-58068796-3	chr13	58068688	58068888	+	888.716675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195075, intron 6 of 16)	intron (NM_001195075, intron 6 of 16)	33640.0	NM_001195075	100503085.0	Mm.379256	NM_001195075	ENSMUSG00000014164	Klhl3	7530408C15Rik|AI430941|EG627648	kelch-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-89543196-4	chr13	89543106	89543306	+	830.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013500, intron 1 of 4)	intron (NM_013500, intron 1 of 4)	2570.0	NM_013500	12950.0	Mm.266790	NM_013500	ENSMUSG00000021613	Hapln1	BB099155|CLP|Crtl1|Crtl1l|LP|LP-1	hyaluronan and proteoglycan link protein 1	protein-coding	1.86952808091073	2.43428605162818	1.90619048570838	2.44023549367326	2.17364891289315	1.65701098366405	1.1550638860512	1.132242103928	-1.54943255167736	0.15421551941235	0.609540819282158
Merged-chr10-128369023-4	chr10	128368911	128369111	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001081040, exon 1 of 5)	5' UTR (NM_001081040, exon 1 of 5)	1026.0	NM_001081040	210582.0	Mm.296876	NM_001081040	ENSMUSG00000039914	Coq10a	Gm1	coenzyme Q10A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107641313-2	chr9	107641224	107641424	+	937.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5982.0	NM_008138	14678.0	Mm.196464	NM_008138	ENSMUSG00000032562	Gnai2	C76432|Galphai2|Gia|Gnai-2	guanine nucleotide binding protein (G protein), alpha inhibiting 2	protein-coding	0.199832551856173	0.228398577083278	0.219182951378542	1.28698894450384	0.201655215698972	0.230457923979673	0.610877652230391	1.04958300044828	-0.103731248006487	0.95881099336984	1
Merged-chr14-102526975-2	chr14	102526875	102527075	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	455657.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-26435567-4	chr8	26435466	26435666	+	914.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	277397.0	NM_199042	73754.0	Mm.383241	NM_199042	ENSMUSG00000037214	Thap1	4833431A01Rik|AW490810	THAP domain containing, apoptosis associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27210486-2	chr2	27210386	27210586	+	769.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_138665, intron 17 of 20)	intron (NM_138665, intron 17 of 20)	36817.0	NM_138665	192166.0	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-7341792-4	chr19	7341701	7341901	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007928)	promoter-TSS (NM_007928)	59.0	NM_001080389	13728.0	Mm.258986	NM_007928	ENSMUSG00000024969	Mark2	EMK-1|Emk|Par-1|Par-1b	MAP/microtubule affinity regulating kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-73395675-4	chr2	73395574	73395774	+	733.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	-9194.0	NM_001276444	68526.0	Mm.451014	NM_001080707	ENSMUSG00000041762	Gpr155	1110017O10Rik|DEPDC3|F730029F15Rik|PGR22	G protein-coupled receptor 155	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127009628-1	chr7	127009528	127009728	+	545.0	f1_balb.idr	intron (NM_080638, intron 1 of 14)	PB1D7|SINE|Alu	4966.0	NM_080638	78388.0	Mm.228797	NM_080638	ENSMUSG00000030681	Mvp	2310009M24Rik|LRP|VAULT1	major vault protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-113907163-4	chr5	113907050	113907250	+	991.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011779, intron 1 of 10)	MTC|LTR|ERVL-MaLR	1556.0	NM_011779	23790.0	Mm.260158	NM_011779	ENSMUSG00000004530	Coro1c	AL022675|AW455561|AW548837	coronin, actin binding protein 1C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-90050026-1	chr7	90049926	90050126	+	1000.0	f1_c57bl6.idr	TTS (NR_110364)	TTS (NR_110364)	20867.0	NR_110364	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-75449804-2	chr12	75449704	75449904	+	795.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33023.0	NM_175644	217674.0	Mm.252250	NM_175644	ENSMUSG00000048982	Gphb5	OGH|Zlut1	glycoprotein hormone beta 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-125272203-4	chr10	125272121	125272321	+	882.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358496, intron 3 of 5)	intron (NM_001358496, intron 3 of 5)	36595.0	NM_001358915	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25179810-3	chr7	25179721	25179921	+	871.988892	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	24752.0	NR_045848	434147.0	Mm.59171	NM_001033781	ENSMUSG00000074274	D930028M14Rik	EG434147	RIKEN cDNA D930028M14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-110567706-3	chr13	110567603	110567803	+	763.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	172659.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72439567-4	chr6	72439434	72439634	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145569)	promoter-TSS (NM_145569)	24.0	NM_145569	232087.0	Mm.29815	NM_145569	ENSMUSG00000053907	Mat2a	D630045P18Rik	methionine adenosyltransferase II, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-107567623-2	chr11	107567523	107567723	+	876.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_198298, intron 2 of 31)	intron (NM_198298, intron 2 of 31)	19663.0	NM_198298	78455.0	Mm.272047	NM_198298	ENSMUSG00000020721	Helz	3110078M01Rik|9430093I07Rik|9630002H22Rik|AI851979|DRHC	helicase with zinc finger domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-58998058-2	chr13	58997958	58998158	+	547.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025074, intron 13 of 17)	URR1B|DNA|hAT-Charlie	190361.0	NM_001025074	18212.0	Mm.130054	NM_008745	ENSMUSG00000055254	Ntrk2	GP145-TrkB/GP95-TrkB|Tkrb|trk-B|trkB	neurotrophic tyrosine kinase, receptor, type 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16222082-4	chr7	16221979	16222179	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285931)	promoter-TSS (NM_001285931)	-47.0	NM_027883	71723.0	Mm.75259	NM_027883	ENSMUSG00000006019	Dhx34	1200013B07Rik|1810012L18Rik|Ddx34|mKIAA0134	DEAH (Asp-Glu-Ala-His) box polypeptide 34	protein-coding	5.75381609292067	5.99256278230619	5.91698623549345	5.82365838127448	6.26815748784374	6.09649815365699	5.81752937780422	5.69261121009875	0.131702945138137	0.583053448079769	0.966599221005409
Merged-chr17-25858887-2	chr17	25858787	25858987	+	672.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163766, intron 8 of 40)	intron (NM_001163766, intron 8 of 40)	2628.0	NM_001163766	106618.0	Mm.35470	NM_134124	ENSMUSG00000073434	Wdr90	3230401M21Rik|AI551153|mKIAA1924	WD repeat domain 90	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-9892756-2	chr1	9892672	9892872	+	887.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133220, intron 17 of 17)	B4|SINE|B4	-15866.0	NM_177722	240697.0	Mm.259800	NM_177722	ENSMUSG00000046101	Mcmdc2	6030422M02Rik	minichromosome maintenance domain containing 2	protein-coding	2.30467805431654	2.16264717657371	2.09391736447115	2.03866906262333	2.8775606931793	2.4740643030581	2.89130467672714	2.43752146667822	1.21496725573418	0.121630794468719	0.547110574369792
Merged-chr7-141393751-2	chr7	141393651	141393851	+	771.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011528, intron 1 of 7)	intron (NM_011528, intron 1 of 7)	1591.0	NM_011528	21351.0	Mm.29182	NM_011528	ENSMUSG00000025503	Taldo1	-	transaldolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-83097832-4	chr15	83097731	83097931	+	858.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2374.0	NM_023475	68607.0	Mm.30056	NM_023475	ENSMUSG00000058586	Serhl	0610008B10Rik|1110019M09Rik|AU019786	serine hydrolase-like	protein-coding	2.09139446093074	2.44847335908608	1.63255696810574	2.20610533743706	2.10899959821938	1.69544959090197	1.21424234959467	1.75512014543436	-1.06755855013715	0.292883315546375	0.797431320709244
Merged-chr1-171407434-2	chr1	171407336	171407536	+	608.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001005508, exon 11 of 12)	exon (NM_001005508, exon 11 of 12)	-3877.0	NM_001305678	22278.0	Mm.8	NM_009480	ENSMUSG00000026641	Usf1	bHLHb11	upstream transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-28489361-2	chr8	28489261	28489461	+	569.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus4|LINE|L1	-404508.0	NR_033590	666422.0	Mm.484413	NR_033590	ENSMUSG00000110372	Gm8096	EG666422	3-phosphoglycerate dehydrogenase pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-27553164-4	chr7	27553047	27553247	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011116)	promoter-TSS (NM_011116)	71.0	NM_011116	18807.0	Mm.6483	NM_011116	ENSMUSG00000003363	Pld3	Sam-9	phospholipase D family, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-35570229-4	chr9	35570128	35570328	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029762)	promoter-TSS (NM_029762)	-159.0	NM_029762	76832.0	Mm.482285	NM_029762	ENSMUSG00000050555	Hyls1	3010015K02Rik	HYLS1, centriolar and ciliogenesis associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-35890884-4	chr12	35890770	35890970	+	913.43335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34751.0	NM_207531	403205.0	Mm.190508	NM_207531	ENSMUSG00000036231	Agr3	BCMP11|E030025L21Rik|Gm888	anterior gradient 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71521771-2	chr17	71521663	71521863	+	708.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023294, intron 3 of 16)	intron (NM_023294, intron 3 of 16)	5094.0	NM_023294	67052.0	Mm.225956	NM_023294	ENSMUSG00000024056	Ndc80	2610020P18Rik|AV139730|HEC|HEC1|Kntc2	NDC80 kinetochore complex component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-142935794-4	chr5	142935681	142935881	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR33B|LTR|ERVL	-24574.0	NM_007984	14086.0	Mm.289707	NM_007984	ENSMUSG00000029581	Fscn1	AI663989|Fan1|fascin-1	fascin actin-bundling protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-102074238-2	chr5	102074138	102074338	+	893.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4317.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-51140553-3	chr14	51140461	51140661	+	821.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6206.0	NM_011271	19752.0	Mm.235538	NM_011271	ENSMUSG00000035896	Rnase1	AI574248|Rib-1|Rib1	ribonuclease, RNase A family, 1 (pancreatic)	protein-coding	2.14348238757073	2.41466164900009	1.22412320956073	1.43310689317019	2.47629358929367	1.73396290672966	1.85048352299625	2.45240948542195	0.681999616470073	0.505040237621403	0.940939014262092
Merged-chr8-85071238-1	chr8	85071138	85071338	+	558.0	f1_balb.idr	promoter-TSS (NM_001039514)	promoter-TSS (NM_001039514)	-519.0	NM_001039514	330817.0	Mm.193086	NM_201408	ENSMUSG00000060038	Dhps	Dhs	deoxyhypusine synthase	protein-coding	0.922884792711239	1.06175393178979	0.562454955857361	1.09005606478643	0.820707124542714	0.768499726051285	0.564237572756025	1.09722288696195	-0.51974770279862	0.735719022926822	1
Merged-chr17-74430673-4	chr17	74430570	74430770	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033367, intron 8 of 8)	MLT1J|LTR|ERVL-MaLR	28438.0	NM_001033367	268973.0	Mm.311884	NM_001033367	ENSMUSG00000039193	Nlrc4	9530011P19Rik|CLAN|CLAN1|CLANA|CLANB|CLANC|CLAND|Card12|IPAF	NLR family, CARD domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-104639044-3	chr3	104638955	104639155	+	971.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009196, intron 1 of 4)	CpG	391.0	NM_009196	20501.0	Mm.9086	NM_009196	ENSMUSG00000032902	Slc16a1	AL022710|Mct1	solute carrier family 16 (monocarboxylic acid transporters), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-12085682-4	chr2	12085586	12085786	+	932.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Rod|LINE|L1	-215560.0	NR_040353	338535.0	Mm.483275	NR_040353	ENSMUSG00000086843	E030013I19Rik	-	RIKEN cDNA E030013I19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-100762113-4	chr15	100762006	100762206	+	962.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021530, intron 1 of 24)	CpG	359.0	NM_021530	59033.0	Mm.209856	NM_021530	ENSMUSG00000023032	Slc4a8	AW493845|C230026C11|NDCBE|kNBC-3	solute carrier family 4 (anion exchanger), member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-60113880-4	chr2	60113772	60113972	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001182, intron 1 of 35)	L1MA5A|LINE|L1	11868.0	NM_001001182	407823.0	Mm.228071	NM_001001182	ENSMUSG00000026987	Baz2b	5830435C13Rik|BC053917|D2Ertd794e	bromodomain adjacent to zinc finger domain, 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-4102203-2	chr5	4102103	4102303	+	636.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_020010, intron 2 of 9)	Lx8|LINE|L1	2494.0	NM_020010	13121.0	Mm.140158	NM_020010	ENSMUSG00000001467	Cyp51	AI426508|CYPLI|Cyp51a1|Ldm|P450-14DM|P450LI	cytochrome P450, family 51	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-177711197-4	chr1	177711102	177711302	+	977.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR25B|LTR|ERVK	-18612.0	NM_027077	69428.0	Mm.84467	NM_027077	ENSMUSG00000015962	1700016C15Rik	-	RIKEN cDNA 1700016C15 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-104448674-3	chr11	104448499	104448699	+	788.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359634, intron 2 of 14)	B1_Mur2|SINE|Alu	-6308.0	NM_001081045	76719.0	Mm.136418	NM_001081045	ENSMUSG00000018412	Kansl1	1700081L11Rik|9430041J06Rik|mKIAA1267	KAT8 regulatory NSL complex subunit 1	protein-coding	-0.906278453279413	-0.407431447964563	-1.048208294768	-1.05352992943534	-1.05671119907732	-1.03350740516421	-1.04547307017549	-1.05313686373073	-2.88793990269837	0.350705703949045	1
Merged-chr3-107782205-2	chr3	107782105	107782305	+	760.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21736.0	NM_001113529	12977.0	Mm.795	NM_007778	ENSMUSG00000014599	Csf1	C87615|Csfm|MCSF|op	colony stimulating factor 1 (macrophage)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-148496176-4	chr5	148496062	148496262	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55511.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	3.24964880380264	3.96215090970935	3.61289470201403	3.14380779107746	3.57212079403397	4.53794045316475	3.86329335621923	3.2636532862205	0.534264692425938	0.32105547002343	0.823346905075712
Merged-chr10-14055574-4	chr10	14055488	14055688	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358783, intron 2 of 12)	intron (NM_001358783, intron 2 of 12)	89209.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-5855912-2	chr13	5855812	5856012	+	853.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045891, exon 3 of 3)	non-coding (NR_045891, exon 3 of 3)	2180.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-83627989-2	chr2	83627889	83628089	+	556.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-16589.0	NM_026934	69082.0	Mm.27804	NM_026934	ENSMUSG00000027091	Zc3h15	1700006A17Rik|1810012H02Rik|2610312B22Rik|FM22|Ierepo4	zinc finger CCCH-type containing 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-102011409-2	chr7	102011309	102011509	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133947, intron 19 of 24)	intron (NM_133947, intron 19 of 24)	6746.0	NM_010531	16068.0	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	-1.8429182434137	-1.8129848525291	-1.82203695700074	-1.54461076807193	-1.84081697472045	-1.81102322372834	-1.81998775896484	-1.82814164409203	-1.43114970378833	0.684630132144154	1
Merged-chr2-31385378-2	chr2	31385278	31385478	+	700.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-84892.0	NM_007494	11898.0	Mm.3217	NM_007494	ENSMUSG00000076441	Ass1	AA408052|ASS|Ass-1|fold	argininosuccinate synthetase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-70709337-2	chr2	70709237	70709437	+	565.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47828.0	NM_027352	70231.0	Mm.271950	NM_027352	ENSMUSG00000014959	Gorasp2	0610011A07Rik|2410043M02Rik|5730520M13Rik|9430094F20Rik|AW552058|GOLPH2|GRASP55|GRS2|p59	golgi reassembly stacking protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-111093676-2	chr8	111093576	111093776	+	769.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1069.0	NM_198308	319518.0	Mm.28350	NM_198308	ENSMUSG00000033624	Pdpr	4930402E16Rik|AU018056|mKIAA1990	pyruvate dehydrogenase phosphatase regulatory subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-62838096-1	chr14	62837996	62838196	+	1000.0	f0_balb.idr	TTS (NR_106174)	TTS (NR_106174)	375.0	NR_106174	102465889.0		NR_106174	ENSMUSG00000099245	Mir8098	Gm27462|mmu-mir-8098	microRNA 8098	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-41639885-4	chr15	41639779	41639979	+	978.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152565, intron 2 of 17)	intron (NR_152565, intron 2 of 17)	-149116.0	NM_001358976	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-99647087-4	chr12	99646981	99647181	+	967.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR50A|LTR|ERVK	-19107.0	NR_045288	73457.0	Mm.383439	NR_045288	ENSMUSG00000100211	1700064M15Rik	-	RIKEN cDNA 1700064M15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-32651244-4	chr19	32651131	32651331	+	960.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011864, intron 8 of 12)	intron (NM_011864, intron 8 of 12)	31226.0	NM_011864	23972.0	Mm.203916	NM_011864	ENSMUSG00000024899	Papss2	1810018P12Rik|AI159688|AtpsU2|Atpsk2|Sk2|bm	3'-phosphoadenosine 5'-phosphosulfate synthase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-25408994-2	chr10	25408894	25409094	+	971.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013511, intron 1 of 19)	intron (NM_013511, intron 1 of 19)	626.0	NM_013511	13822.0	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	1.31225480430428	0.817567311573291	1.73303933717259	1.27165296557407	1.09064224246627	1.37167994403429	1.32202266946057	0.797200624426308	-0.675899714219656	0.617882195464716	0.977517868708383
Merged-chr13-46735975-4	chr13	46735866	46736066	+	978.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8117.0	NM_175749	218210.0	Mm.255398	NM_175749	ENSMUSG00000021374	Nup153	B130015D15Rik|C88147	nucleoporin 153	protein-coding	3.25820571757716	2.62383069669061	3.29936195035263	3.28598896319473	3.5147006788994	2.92645046745753	3.05271214812319	2.47551726774355	-0.164699483673877	0.797260275996037	0.998431161219273
Merged-chr6-26404061-3	chr6	26403973	26404173	+	798.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVL-int|LTR|ERVL	472647.0	NR_040771	626904.0	Mm.126787	NR_040771	ENSMUSG00000106799	Gm20756	-	predicted gene, 20756	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-12140873-4	chr4	12140779	12140979	+	757.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028226, intron 1 of 2)	CpG	762.0	NM_028226	72397.0	Mm.430709	NM_028226	ENSMUSG00000046667	Rbm12b1	3000004N20Rik|Rbm12b|Rbm12ba	RNA binding motif protein 12 B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-11099726-2	chr8	11099626	11099826	+	707.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-91296.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106663494-1	chr11	106663394	106663594	+	589.0	f0_balb.idr	intron (NM_001305158, intron 13 of 14)	intron (NM_001305158, intron 13 of 14)	-50564.0	NM_198292	21763.0	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-52398087-4	chr12	52397984	52398184	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	82525.0	NR_136881	102638611.0	Mm.363799	NR_136881	ENSMUSG00000111982	Gm35135	-	predicted gene, 35135	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94310880-1	chr10	94310780	94310980	+	805.5	f0_balb.idr	Intergenic	Intergenic	-1069.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129259706-2	chr2	129259606	129259806	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	37506.0	NM_181589	70466.0	Mm.45785	NM_181589	ENSMUSG00000048327	Ckap2l	2010016H04Rik|2610318C08Rik|AV070319|radmis|rdm	cytoskeleton associated protein 2-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-61412736-4	chr3	61412710	61412910	+	709.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48303.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-25201665-4	chr8	25201575	25201775	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177089)	promoter-TSS (NM_177089)	-133.0	NM_177089	320165.0	Mm.308452	NM_177089	ENSMUSG00000065954	Tacc1	4833447E04Rik|AA960202|B230378H13Rik	transforming, acidic coiled-coil containing protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-34345105-6	chr13	34344989	34345189	+	858.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033167)	promoter-TSS (NM_001033167)	93.0	NM_001033167	73102.0	Mm.23932	NM_001033167	ENSMUSG00000038267	Slc22a23	3110004L20Rik	solute carrier family 22, member 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-22656603-2	chr8	22656503	22656703	+	743.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2-int|LTR|ERVL-MaLR	-3166.0	NM_011130	18970.0	Mm.123211	NM_011130	ENSMUSG00000031536	Polb	A430088C08Rik	polymerase (DNA directed), beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27960587-3	chr17	27960455	27960655	+	825.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181413, intron 1 of 24)	intron (NM_181413, intron 1 of 24)	51249.0	NM_181413	224650.0	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-87019032-2	chr11	87018932	87019132	+	859.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-25270.0	NM_001005341	77864.0	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-110787858-2	chr5	110787758	110787958	+	623.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_009469, exon 24 of 28)	exon (NM_009469, exon 24 of 28)	-7243.0	NM_001025562	56361.0	Mm.23528	NM_019700	ENSMUSG00000029507	Pus1	A730013B20Rik|MPUS1|mPus1p	pseudouridine synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128913419-4	chr10	128913335	128913535	+	830.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001282966)	TTS (NM_001282966)	3569.0	NM_007653	12512.0	Mm.371552	NM_007653	ENSMUSG00000025351	Cd63	C75951|ME491|Tspan30	CD63 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-60928478-2	chr2	60928378	60928578	+	774.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	34726.0	NM_020296	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-62092757-4	chr18	62092673	62092873	+	992.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	87208.0	NM_007420	11555.0	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	1.28450400653211	0.953237062854075	0.926671447795533	0.905326424757621	2.76082818842762	1.82751501816908	1.75666487012691	2.23466355953088	4.19076580612843	0.00210314578800858	0.0347569465076128
Merged-chr11-21369405-2	chr11	21369305	21369505	+	731.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290634, intron 1 of 9)	intron (NM_001290634, intron 1 of 9)	1224.0	NM_139297	216558.0	Mm.28877	NM_139297	ENSMUSG00000001891	Ugp2	UDPGP|UGPase	UDP-glucose pyrophosphorylase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-94691947-4	chr9	94691844	94692044	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177909, intron 2 of 15)	intron (NM_177909, intron 2 of 15)	22052.0	NM_177909	331004.0	Mm.326125	NM_177909	ENSMUSG00000031129	Slc9a9	5730527A11Rik|9930105B05|AI854429|Nhe9	solute carrier family 9 (sodium/hydrogen exchanger), member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-37222030-4	chr10	37221934	37222134	+	915.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-83108.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-42074614-4	chr13	42074556	42074756	+	769.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007772, intron 2 of 8)	intron (NM_007772, intron 2 of 8)	22635.0	NM_007772	110521.0	Mm.4808	NM_007772	ENSMUSG00000021366	Hivep1	Cryabp1	human immunodeficiency virus type I enhancer binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-112112654-2	chr13	112112554	112112754	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-175797.0	NM_001168403	77318.0	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-57799667-4	chr10	57799570	57799770	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020561, intron 1 of 7)	ORR1D2|LTR|ERVL-MaLR	5126.0	NM_020561	57319.0	Mm.2379	NM_020561	ENSMUSG00000019872	Smpdl3a	0610010C24Rik|AI529588|ASM3A|ASML3|ASML3A	sphingomyelin phosphodiesterase, acid-like 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-174076271-4	chr2	174076205	174076405	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172675)	promoter-TSS (NM_172675)	-746.0	NM_172675	228960.0	Mm.277977	NM_172675	ENSMUSG00000027522	Stx16	4930401D03|5430410K23Rik|6330500A18Rik|AI648908|AW553605|Syn16	syntaxin 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-121546147-4	chr3	121546063	121546263	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13819.0	NM_145394	213603.0	Mm.33062	NM_145394	ENSMUSG00000039865	Slc44a3	BC010552	solute carrier family 44, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-34380780-4	chr18	34380678	34380878	+	913.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7363.0	NM_007874	13476.0	Mm.280075	NM_007874	ENSMUSG00000005873	Reep5	AI324241|AU022809|AW495741|DP1/TB2|Dp1|R74856|TB2/DP1	receptor accessory protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6231822-2	chr19	6231722	6231922	+	628.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198168, intron 6 of 13)	intron (NM_198168, intron 6 of 13)	4018.0	NM_198168	225849.0	Mm.118076	NM_198168	ENSMUSG00000024777	Ppp2r5b	B'beta|BC026670	protein phosphatase 2, regulatory subunit B', beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-84294309-4	chr18	84294180	84294380	+	755.895813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033341, intron 8 of 8)	intron (NM_001033341, intron 8 of 8)	206122.0	NM_146090	225791.0	Mm.147052	NM_146090	ENSMUSG00000049090	Zadh2	C530046K17Rik|PTGR-3|Pthr3	zinc binding alcohol dehydrogenase, domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-23972674-2	chr17	23972530	23972730	+	676.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_013921, exon 6 of 6)	exon (NM_013921, exon 6 of 6)	2600.0	NM_013921	30943.0	Mm.142568	NM_013921	ENSMUSG00000024124	Prss30	2010015P21Rik|Disp|Disp1|Tmprss8	protease, serine 30	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-41249785-4	chr13	41249724	41249924	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001135577)	promoter-TSS (NM_001135577)	-20.0	NM_001135577	108934.0	Mm.38578	NM_001135577	ENSMUSG00000091264	Smim13	2900036K02Rik	small integral membrane protein 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-37958946-2	chr18	37958846	37959046	+	747.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_153793, exon 8 of 8)	3' UTR (NM_153793, exon 8 of 8)	3387.0	NM_153793	225392.0	Mm.233516	NM_153793	ENSMUSG00000044024	Rell2	4631403P03Rik|ependolin	RELT-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167691106-2	chr2	167691006	167691206	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015500)	promoter-TSS (NR_015500)	-71.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-54757236-4	chr14	54757132	54757332	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016972, intron 3 of 10)	intron (NM_016972, intron 3 of 10)	24654.0	NM_016972	50934.0	Mm.276831	NM_016972	ENSMUSG00000022180	Slc7a8	AA408822|LAT2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	protein-coding	5.49413889709099	4.55219727906431	4.88112049259979	5.70830806455069	4.56634093275044	3.04936616248551	4.64962087682941	4.7786595532894	-0.996834025861753	0.0189038185203355	0.172766579075212
Merged-chr5-88770531-4	chr5	88770506	88770706	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007832, intron 2 of 6)	MTC|LTR|ERVL-MaLR	5593.0	NM_007832	13178.0	Mm.298892	NM_007832	ENSMUSG00000029366	Dck	-	deoxycytidine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-66076943-4	chr5	66076926	66077126	+	818.59375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139065, intron 2 of 6)	intron (NM_139065, intron 2 of 6)	21153.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-194985999-4	chr1	194985901	194986101	+	976.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-9042.0	NR_033564	320400.0	Mm.417608	NR_033564	ENSMUSG00000097325	Gm16897	C030002c11rik	predicted gene, 16897	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-22641932-4	chr8	22641839	22642039	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011130, intron 7 of 13)	intron (NM_011130, intron 7 of 13)	-5130.0	NR_027886	68074.0	Mm.463136	NR_027886		A930013F10Rik	-	RIKEN cDNA A930013F10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106752332-4	chr11	106752233	106752433	+	995.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033435, intron 2 of 6)	intron (NM_001033435, intron 2 of 6)	1107.0	NM_001033435	380732.0	Mm.343952	NM_001033435	ENSMUSG00000040528	Milr1	Allergin-1|Gm885|Mca32	mast cell immunoglobulin like receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-43492985-4	chr18	43492885	43493085	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	-54699.0	NM_001291455	22240.0	Mm.8180	NM_009468	ENSMUSG00000024501	Dpysl3	CRMP-4|DRP-3|TUC4|ULIP-1|Ulip|Ulip1	dihydropyrimidinase-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-57847294-9	chr3	57847163	57847363	+	958.7777710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019410, intron 1 of 2)	CpG	494.0	NM_019410	18645.0	Mm.271744	NM_019410	ENSMUSG00000027805	Pfn2	Pfn	profilin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-40318321-4	chr9	40318218	40318418	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151734, intron 3 of 18)	intron (NR_151734, intron 3 of 18)	3005.0	NM_001357622	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3645631-2	chr4	3645531	3645731	+	729.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10875.0	NR_040643	70143.0	Mm.417835	NR_040643	ENSMUSG00000085394	2210414B05Rik	-	RIKEN cDNA 2210414B05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-15043027-4	chr8	15042944	15043144	+	774.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_037972, exon 2 of 2)	non-coding (NR_037972, exon 2 of 2)	3034.0	NR_037972	434285.0	Mm.334425	NM_001007591	ENSMUSG00000049008	BB014433	-	expressed sequence BB014433	ncRNA	-2.18138529563533	-2.15523716995652	-2.1631445789866	-2.16963996020037	-2.05513010215571	-2.15352360143315	-2.16135451490766	-2.16847729006863	0.759018020146679	0.829933115115583	1
Merged-chr5-65972743-2	chr5	65972643	65972843	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081104, intron 4 of 4)	intron (NM_001081104, intron 4 of 4)	5619.0	NM_001081104	231252.0	Mm.140015	NM_001081104	ENSMUSG00000029205	Chrna9	2410015I05Rik|Acra9|EG666827|Gm8311	cholinergic receptor, nicotinic, alpha polypeptide 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127628357-2	chr10	127628258	127628458	+	662.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7210.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	0.650969294739574	0.242590606524186	0.222044887997115	0.206124747661373	0.500508867236264	0.0616280773368816	0.0566511009566571	0.0524189668569359	-1.22349538013263	0.540629752784562	1
Merged-chr4-91752800-2	chr4	91752700	91752900	+	602.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-352816.0	NM_207685	15569.0	Mm.318042	NM_010486	ENSMUSG00000008489	Elavl2	Hub|mel-N1	ELAV like RNA binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-8463029-4	chr15	8462932	8463132	+	903.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18569.0	NM_201232	71175.0	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	NIPBL cohesin loading factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-18056102-3	chr10	18055997	18056197	+	891.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001111065, exon 1 of 19)	exon (NM_001111065, exon 1 of 19)	157.0	NM_001111065	19707.0	Mm.4479	NM_009048	ENSMUSG00000019854	Reps1	BB161292	RalBP1 associated Eps domain containing protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-107784181-3	chr13	107784086	107784286	+	775.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 3 of 14)	intron (NM_145456, intron 3 of 14)	96789.0	NR_045900	72257.0	Mm.234155	NR_045900	ENSMUSG00000102000	1700006H21Rik	-	RIKEN cDNA 1700006H21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-30137118-4	chr14	30137019	30137219	+	955.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083616, intron 9 of 46)	intron (NM_001083616, intron 9 of 46)	114486.0	NM_175343	218865.0	Mm.259916	NM_172264	ENSMUSG00000015970	Chdh	AU041472|D630034H06Rik	choline dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131473981-4	chr1	131473882	131474082	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081011, intron 2 of 22)	intron (NM_001081011, intron 2 of 22)	53379.0	NM_001081011	14270.0	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-116774882-2	chr6	116774782	116774982	+	701.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D11|SINE|Alu	-58124.0	NM_178768	319776.0	Mm.133120	NM_178768	ENSMUSG00000048108	Tmem72	C230095G01Rik	transmembrane protein 72	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-47217470-4	chr13	47217359	47217559	+	967.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146042, intron 2 of 7)	intron (NM_146042, intron 2 of 7)	23456.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-8437603-2	chr12	8437526	8437726	+	800.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	62383.0	NM_007483	11852.0	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	0.419689195419672	1.23949380877721	1.27709805852926	0.907307528007687	0.852525205944149	0.451494000529001	0.441872854257661	0.43357711452305	-2.50261483223304	0.163672021511657	1
Merged-chr3-83843621-5	chr3	83843473	83843673	+	876.4916380000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1965.0	NM_011905	24088.0	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-61771437-1	chr1	61771337	61771537	+	730.0	f1_c57bl6.idr	intron (NM_001081050, intron 2 of 22)	intron (NM_001081050, intron 2 of 22)	132613.0	NM_001081050	72823.0	Mm.35153	NM_001081050	ENSMUSG00000052062	Pard3b	1810008K04Rik|2010002N16Rik|2810455B10Rik|Als2cr19|PAR3B|PAR3L|PAR3beta	par-3 family cell polarity regulator beta	protein-coding	-0.999004873958601	-1.11947659419295	-1.13046989609953	-0.605296720201681	-1.1420649015184	-1.11709429981014	-1.1279812535142	-1.13788371555445	-2.63305150711585	0.415139208447062	1
Merged-chr2-4503651-2	chr2	4503551	4503751	+	671.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 5 of 23)	intron (NM_001177843, intron 5 of 23)	-56103.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5693316-2	chr19	5693230	5693430	+	962.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_022012, intron 3 of 11)	intron (NM_022012, intron 3 of 11)	4199.0	NM_022012	26403.0	Mm.185026	NM_022012	ENSMUSG00000004054	Map3k11	2610017K16Rik|Mlk3|PTK1|SPRK	mitogen-activated protein kinase kinase kinase 11	protein-coding	1.78938048324417	3.01175663742176	1.25271453491841	0.94984259331549	0.912328946028741	1.74863299958039	1.49086141427813	2.50399411232886	-0.530753961680121	0.658124719713729	0.988704682801132
Merged-chr8-109853622-3	chr8	109853525	109853725	+	834.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009677, exon 18 of 24)	exon (NM_009677, exon 18 of 24)	14313.0	NR_028532	100217432.0		NR_028532		Snord71	MBII-239	small nucleolar RNA, C/D box 71	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-136673526-4	chr1	136673442	136673642	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9854.0	NR_045324	100503460.0	Mm.30630	NR_045324	ENSMUSG00000097113	Gm19705	-	predicted gene, 19705	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-108425685-3	chr11	108425599	108425799	+	794.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029606, intron 1 of 27)	CpG	433.0	NM_029606	76380.0	Mm.344071	NM_029586	ENSMUSG00000020728	Cep112	1700001M19Rik|1700029K01Rik|8430407H02Rik|AV043680|AV207351|Ccdc46|Macoco	centrosomal protein 112	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-17065585-4	chr6	17065485	17065685	+	938.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207176, intron 1 of 6)	intron (NM_207176, intron 1 of 6)	436.0	NM_207176	21753.0	Mm.436548	NM_011570	ENSMUSG00000029552	Tes	D6Ertd352e|TESS|Tes1|Tes2|testin2	testis derived transcript	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-8309578-2	chr17	8309478	8309678	+	576.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_073374, intron 1 of 4)	B1_Mur4|SINE|Alu	-1510.0	NM_001357890	106489.0	Mm.311080	NM_134114	ENSMUSG00000073468	Sft2d1	5630401J11Rik|AA409698	SFT2 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-59537640-2	chr11	59537540	59537740	+	859.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3929.0	NM_001359638	216799.0	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-85573991-3	chr9	85573889	85574089	+	699.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	175345.0	NM_001081282	108837.0	Mm.22315	NM_175371	ENSMUSG00000035941	Ibtk	5430411K16Rik|AA409502|BTKI|mKIAA1417	inhibitor of Bruton agammaglobulinemia tyrosine kinase	protein-coding	-0.206807629746931	-0.513390973571213	-0.515978269983597	-0.517952404694419	-0.199742588925577	-0.512803308697197	-0.233614287335567	-0.517608912424646	0.911624009041625	0.73379642865833	1
Merged-chr6-87399335-2	chr6	87399235	87399435	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10400.0	NM_026860	68888.0	Mm.46387	NM_026860	ENSMUSG00000030048	Gkn3	1190003M12Rik	gastrokine 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34561417-4	chr17	34561322	34561522	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2873.0	NM_010929	18132.0	Mm.173813	NM_010929	ENSMUSG00000015468	Notch4	Int-3|Int3|N4	notch 4	protein-coding	0.373263595677936	0.630641393252268	0.00220446607213237	-0.00219580256999669	-0.00842555198450709	0.00918065377423727	0.00346120034018266	0.645552316538442	-0.539683206209014	0.809487766874864	1
Merged-chr7-80025203-4	chr7	80025119	80025319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145999, intron 1 of 4)	CpG	405.0	NM_001146000	209225.0	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-61455550-2	chr10	61455450	61455650	+	643.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-2881.0	NM_010124	13688.0	Mm.259516	NM_010124	ENSMUSG00000020091	Eif4ebp2	2810011I19Rik|4E-BP2|AA792569|BC010348|PHAS-II	eukaryotic translation initiation factor 4E binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-72568719-2	chr15	72568619	72568819	+	729.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22440.0	NM_001033876	223604.0	Mm.386856	NM_001033876	ENSMUSG00000036760	Kcnk9	Task3	potassium channel, subfamily K, member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152428473-4	chr1	152428355	152428555	+	970.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177756, intron 1 of 11)	intron (NM_177756, intron 1 of 11)	28588.0	NM_177756	269132.0	Mm.23782	NM_177756	ENSMUSG00000032649	Colgalt2	AI427652|D730024P12|Glt25d2	collagen beta(1-O)galactosyltransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-40300101-2	chr2	40300001	40300201	+	555.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	-1073752.0	NM_024209	67857.0	Mm.389242	NM_024209	ENSMUSG00000026753	Ppp6c	2310003C10Rik|Pp6C	protein phosphatase 6, catalytic subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-71452963-4	chr6	71452862	71453062	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MDa|LINE|L1	-12325.0	NM_024288	68477.0	Mm.28474	NM_024288	ENSMUSG00000002222	Rmnd5a	1110007A06Rik|AJ237586|AW125795|Gid2|MTA.D02.090	required for meiotic nuclear division 5 homolog A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-33865633-4	chr17	33865541	33865741	+	922.19165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21092.0	NR_128569	104796139.0		NR_128569	ENSMUSG00000098621	Gm27740	Mir6967-2|mmu-mir-6967-2	predicted gene, 27740	ncRNA	3.81078225258962	3.66570684786539	2.66620499653585	3.66126694733849	3.22350643559823	3.51932705296988	3.30991045502443	3.80285358635412	-0.0688045635677289	0.901967281275014	0.998431161219273
Merged-chr11-4186720-4	chr11	4186616	4186816	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134023)	promoter-TSS (NM_134023)	-117.0	NM_134023	103724.0	Mm.28140	NM_134023	ENSMUSG00000034412	Tbc1d10a	AI447804|EPI64|Tbc1d10|mFLJ00288	TBC1 domain family, member 10a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-61222689-2	chr19	61222589	61222789	+	616.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14|LTR|ERV1	5729.0	NM_009970	12982.0	Mm.287228	NM_009970	ENSMUSG00000059326	Csf2ra	CD116|Csfgmra|GM-CSF-Ra|GM-CSFR	colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-37142037-4	chr3	37141938	37142138	+	969.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20B5_MM|LTR|ERVK	-16084.0	NM_008366	16183.0	Mm.14190	NM_008366	ENSMUSG00000027720	Il2	Il-2	interleukin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-11107418-3	chr8	11107307	11107507	+	959.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-98977.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-102222763-2	chr11	102222663	102222863	+	653.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001284248, intron 2 of 28)	intron (NM_001284248, intron 2 of 28)	7387.0	NR_106179	102465892.0		NR_106179	ENSMUSG00000098863	Mir8101	Gm27705|mmu-mir-8101	microRNA 8101	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-78913140-3	chr7	78913015	78913215	+	961.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291220)	promoter-TSS (NM_001291220)	-309.0	NM_001291221	57444.0	Mm.322843	NM_020583	ENSMUSG00000039236	Isg20	1600023I01Rik|2010107M23Rik|20kDa|DnaQL|HEM45	interferon-stimulated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-47278515-6	chr4	47278353	47278553	+	750.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009928, intron 14 of 39)	intron (NM_009928, intron 14 of 39)	70441.0	NM_009928	12819.0	Mm.233547	NM_009928	ENSMUSG00000028339	Col15a1	-	collagen, type XV, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26466392-2	chr17	26466292	26466492	+	915.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42080.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	0.458927658539172	1.86380779095502	0.493801014928652	0.903487112175964	0.84905498772499	1.79280690466822	0.497406971919681	0.483243372087437	-0.143960270793637	0.930044242750782	0.998431161219273
Merged-chr11-3335986-1	chr11	3335886	3336086	+	710.666687	f0_balb.idr	intron (NM_178149, intron 5 of 5)	intron (NM_178149, intron 5 of 5)	5255.0	NM_178149	216505.0	Mm.390323	NM_178149	ENSMUSG00000034614	Pik3ip1	1500004A08Rik|5830455E04Rik|Crkd|Hgfl	phosphoinositide-3-kinase interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97236714-2	chr6	97236614	97236814	+	778.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16066.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-53428939-3	chr10	53428839	53429039	+	677.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19057.0	NR_152767	102640074.0	Mm.412957	NR_152767		Gm36229	-	predicted gene, 36229	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36767208-2	chr18	36767108	36767308	+	755.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173383)	promoter-TSS (NM_173383)	-994.0	NM_173383	213236.0	Mm.234464	NM_173383	ENSMUSG00000044595	Dnd1	BC034897|RBMS4|Ter	DND microRNA-mediated repression inhibitor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-30873427-1	chr1	30873327	30873527	+	1000.0	f0_c57.idr	Intergenic	CpG	-10171.0	NM_001081080	213109.0	Mm.194486	NM_025871	ENSMUSG00000048874	Phf3	2310061N19Rik	PHD finger protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-54595185-4	chr6	54595067	54595267	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164361)	promoter-TSS (NM_001164361)	56.0	NM_001164361	231999.0	Mm.35416	NM_001001335	ENSMUSG00000005225	Plekha8	6330400G01|AA517676|BC052360|Fapp-2|Fapp2	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117968503-5	chr11	117968477	117968677	+	896.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007707, intron 1 of 1)	CpG	789.0	NM_007707	12702.0	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-31109497-3	chr7	31109415	31109615	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008281, intron 2 of 12)	intron (NM_008281, intron 2 of 12)	1482.0	NM_001276269	15451.0	Mm.19182	NM_008281	ENSMUSG00000001249	Hpn	Hlb320	hepsin	protein-coding	0.0479904953555967	0.0633602312606539	0.0583072164658955	0.459636967100231	0.307314934664171	0.542551876522949	0.50118766991023	0.0550987155203171	1.55787052783764	0.458441138345689	1
Merged-chr7-99387788-2	chr7	99387688	99387888	+	940.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_201352, intron 2 of 17)	intron (NM_201352, intron 2 of 17)	6270.0	NM_001362166	233552.0	Mm.286317	NM_201352	ENSMUSG00000035314	Gdpd5	BC024955|Gde2	glycerophosphodiester phosphodiesterase domain containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-8883910-4	chr10	8883805	8884005	+	973.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 1 of 19)	intron (NM_175155, intron 1 of 19)	2165.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	2.04477196895498	1.28752177125041	1.98179022372815	2.33867254605482	2.23750362225619	2.19382574595698	1.99682196900943	1.6478121085388	0.169758427347667	0.863327599876122	0.998431161219273
Merged-chr18-67389376-4	chr18	67389287	67389487	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1344.0	NM_026473	67951.0	Mm.181860	NM_026473	ENSMUSG00000001473	Tubb6	2310057H16Rik|BB220206	tubulin, beta 6 class V	protein-coding	4.71319703885526	5.25901785675202	5.52101927846688	5.04505841715537	4.28808758076561	4.36654023742439	5.81172775988661	4.33795758700843	-0.341556717801863	0.405022196270509	0.890227707166628
Merged-chr9-107747540-4	chr9	107747433	107747633	+	994.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153190, intron 16 of 23)	intron (NR_153190, intron 16 of 23)	23469.0	NM_148930	83486.0	Mm.259197	NM_148930	ENSMUSG00000032580	Rbm5	D030069N10Rik	RNA binding motif protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-4350883-1	chr13	4350783	4350983	+	770.0	f1_c57bl6.idr	Intergenic	RLTR9E|LTR|ERVK	-71484.0	NM_013777	622402.0	Mm.27447	NM_013777	ENSMUSG00000021211	Akr1c12	AI266976|Akra	aldo-keto reductase family 1, member C12	protein-coding	-0.242312013370484	0.250113227550563	-0.233469946299347	0.280996818404033	-0.241493023301702	-0.228169212442592	0.0905294765679438	-0.236217983193713	-1.75384097523707	0.47521828261799	1
Merged-chr19-53535656-3	chr19	53535533	53535733	+	895.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085390, intron 2 of 3)	intron (NM_001085390, intron 2 of 3)	6315.0	NM_001085390	240672.0	Mm.482424	NM_001085390	ENSMUSG00000034765	Dusp5	Gm337	dual specificity phosphatase 5	protein-coding	0.713207261953303	1.26195852136043	0.771286190201252	1.36282209398722	0.718711442778913	1.39242126476987	0.572457983231355	0.563089877731783	-0.86960066032745	0.570666371321101	0.962718661854691
Merged-chr13-64397116-1	chr13	64397016	64397216	+	703.0	f1_c57bl6.idr	Intergenic	MLT1E1A|LTR|ERVL-MaLR	-26596.0	NM_009984	13039.0	Mm.930	NM_009984	ENSMUSG00000021477	Ctsl	1190035F06Rik|CatL|Ctsl1|MEP|fs|nkt	cathepsin L	protein-coding	-0.237013070743116	-0.465408572141755	-0.309710158568927	-0.0877700984032583	-0.231173514197846	-0.464709212151369	-0.467817078464168	-0.470448654620632	-1.55778525306022	0.530179951440933	1
Merged-chr12-33304115-3	chr12	33304103	33304303	+	688.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033436, intron 1 of 7)	B1_Mur1|SINE|Alu	1688.0	NM_001033436	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-37788903-2	chr8	37788800	37789000	+	984.083374	f0_balb.idr|f1_balb.idr	intron (NM_145841, intron 2 of 7)	intron (NM_145841, intron 2 of 7)	463302.0	NR_029884	723860.0		NR_029884	ENSMUSG00000065457	Mir383	Mirn383|mir-383|mmu-mir-383	microRNA 383	ncRNA	2.17321871145252	2.56130600014093	3.23067550577889	1.58713162911233	4.84245949048134	5.7908785770589	5.00787230907018	5.3651613277869	3.86543760823581	1.1493767617427e-12	3.76096974201516e-10
Merged-chr1-58861988-1	chr1	58861888	58862088	+	543.0	f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	59486.0	NM_001277926	12370.0	Mm.336851	NM_009812	ENSMUSG00000026029	Casp8	CASP-8|FLICE|MACH|Mch5	caspase 8	protein-coding	0.619876015207737	1.42166889835122	0.467731356345325	1.29810564231254	0.446010762118514	0.481638922516427	0.470256145592482	1.30779939267587	-1.20749042546204	0.486903755930005	0.932610354988537
Merged-chr1-132370939-4	chr1	132370857	132371057	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178874, intron 2 of 4)	intron (NM_178874, intron 2 of 4)	-3009.0	NM_001311108	68875.0	Mm.273785	NM_178874	ENSMUSG00000042066	Tmcc2	1110063G11Rik	transmembrane and coiled-coil domains 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-58096311-4	chr11	58096182	58096382	+	946.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4_|SINE|ID	-7688.0	NM_026949	69125.0	Mm.28910	NM_026949	ENSMUSG00000020515	Cnot8	1500015I04Rik|1810022F04Rik|AA536816|AU015770|AU043059	CCR4-NOT transcription complex, subunit 8	protein-coding	3.35843330265343	2.32299901025526	3.01245438846895	3.53465445259833	3.38580923834178	4.03518569431305	3.66040347110435	3.04903658773076	0.68649669840198	0.255166126583887	0.753346736474035
Merged-chr9-57651019-4	chr9	57650878	57651078	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304761, intron 2 of 14)	intron (NM_001304761, intron 2 of 14)	2653.0	NM_001304761	12988.0	Mm.21974	NM_007783	ENSMUSG00000032312	Csk	AW212630|p50CSK	c-src tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-129877966-3	chr3	129877907	129878107	+	823.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023196)	promoter-TSS (NM_023196)	-599.0	NR_104611	66350.0	Mm.151951	NM_023196	ENSMUSG00000027999	Pla2g12a	2310004B05Rik|GXII|GXII-1|GXII-1-PLA2|Pla2g12|Rossy|mGXII-1	phospholipase A2, group XIIA	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4142837-2	chr19	4142737	4142937	+	842.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_206973, exon 2 of 2)	exon (NM_206973, exon 2 of 2)	3038.0	NM_206973	269053.0	Mm.131677	NM_206973	ENSMUSG00000044724	Gpr152	A930009H15Rik|Gm673	G protein-coupled receptor 152	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-35747961-2	chr16	35747861	35748061	+	554.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153550, intron 2 of 8)	intron (NM_153550, intron 2 of 8)	21395.0	NM_153550	224132.0	Mm.24094	NM_153550	ENSMUSG00000022848	Dirc2	RCC4	disrupted in renal carcinoma 2 (human)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-29847516-2	chr16	29847417	29847617	+	708.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20A4|LTR|ERVK	131607.0	NR_037689	328657.0	Mm.425982	NM_001033403		Gm1968	-	predicted gene 1968	ncRNA	1.24034853349029	2.37524216306001	3.1611460217802	2.34479376267181	1.68303703420864	2.08137981077857	2.83092112131825	2.35741576618509	-0.317650667121791	0.737609314219954	0.998431161219273
Merged-chr7-45178725-2	chr7	45178625	45178825	+	612.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001195255, intron 2 of 4)	intron (NM_001195255, intron 2 of 4)	872.0	NM_001195255	100039953.0	Mm.300663	NM_001195255	ENSMUSG00000095276	Gfy	Gm2515|Gm581|Goofy	golgi-associated olfactory signaling regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-82571622-4	chr11	82571526	82571726	+	909.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61727.0	NR_033582	791422.0	Mm.341562	NR_033582	ENSMUSG00000069796	Gm11426	-	predicted gene 11426	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-25115142-2	chr17	25115043	25115243	+	902.845215	f1_balb.idr|f1_c57bl6.idr	exon (NM_001163661, exon 2 of 21)	exon (NM_001163661, exon 2 of 21)	762.0	NM_027880	71718.0	Mm.288702	NM_027880	ENSMUSG00000024170	Telo2	1200003M09Rik|AI415602|Tel2|mKIAA0683	telomere maintenance 2	protein-coding	0.0576479495337864	0.590471117342655	0.0707915077873733	0.0658645068684116	0.889086266220714	0.0785845871583208	0.0721970301505679	0.51733604657026	1.47750967957114	0.498018940759976	1
Merged-chr6-127148913-2	chr6	127148813	127149013	+	633.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040274)	promoter-TSS (NR_040274)	-476.0	NR_040274	77558.0	Mm.358918	NR_040273	ENSMUSG00000097166	9330179D12Rik	-	RIKEN cDNA 9330179D12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-152615779-3	chr2	152615702	152615902	+	719.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	7251.0	NM_001039122	654459.0	Mm.358531	NM_001039122	ENSMUSG00000074678	Defb25	BD-25|mBD-25	defensin beta 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153077731-2	chr2	153077631	153077831	+	647.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145536, intron 6 of 8)	ID_B1|SINE|B4	11776.0	NM_145536	228788.0	Mm.299979	NM_145536	ENSMUSG00000027474	Ccm2l	-	cerebral cavernous malformation 2-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59685588-3	chr15	59685473	59685673	+	866.638916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36919.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-64518763-4	chr18	64518649	64518849	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2192.0	NM_001142950	70223.0	Mm.29192	NM_027350	ENSMUSG00000024587	Nars	3010001M15Rik|AA960128|ASNRS|C78150	asparaginyl-tRNA synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-5755216-3	chr5	5755134	5755334	+	889.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5917.0	NM_027399	70358.0	Mm.85429	NM_027399	ENSMUSG00000015652	Steap1	2410007B19Rik|Prss24|Steap	six transmembrane epithelial antigen of the prostate 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-3256884-2	chr15	3256784	3256984	+	637.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13883.0	NM_001042613	20363.0	Mm.392203	NM_009155	ENSMUSG00000064373	Selenop	AU018766|D15Ucla1|Se-P|Sepp1|selp	selenoprotein P	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-36061368-3	chr16	36061276	36061476	+	886.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027342, intron 1 of 4)	intron (NM_027342, intron 1 of 4)	10139.0	NM_027342	70186.0	Mm.212991	NM_027342	ENSMUSG00000003955	Fam162a	2310056P07Rik|HGTD-P	family with sequence similarity 162, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-3270126-4	chr15	3270024	3270224	+	885.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009155)	promoter-TSS (NM_009155)	-643.0	NM_001042613	20363.0	Mm.392203	NM_009155	ENSMUSG00000064373	Selenop	AU018766|D15Ucla1|Se-P|Sepp1|selp	selenoprotein P	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120489494-4	chr8	120489361	120489561	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198671, intron 1 of 15)	CpG-14576	595.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-75833912-1	chr14	75833812	75834012	+	1000.0	f0_c57.idr	Intergenic	RSINE1|SINE|B4	11052.0	NR_045294	100043189.0	Mm.426329	NR_045294		Gm4285	-	predicted gene 4285	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-72285865-5	chr2	72285847	72286047	+	983.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023057, intron 1 of 19)	CpG	246.0	NM_178084	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-90655555-4	chr5	90655464	90655664	+	889.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15037.0	NM_001310656	73246.0	Mm.30172	NM_028478	ENSMUSG00000029370	Rassf6	1600016B17Rik	Ras association (RalGDS/AF-6) domain family member 6	protein-coding	4.30595200054845	3.07296839868986	3.08725857699084	4.27960995157549	3.83294430173208	3.34512737092105	2.30512482054486	4.16601291923235	-0.354700663416722	0.567026057499803	0.962562732139494
Merged-chr6-16897164-3	chr6	16897067	16897267	+	807.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031198, intron 1 of 6)	intron (NM_031198, intron 1 of 6)	1274.0	NM_031198	21426.0	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-108338180-3	chr9	108338065	108338265	+	796.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001329528)	promoter-TSS (NM_001329528)	-915.0	NM_001329528	14775.0	Mm.1090	NM_008160	ENSMUSG00000063856	Gpx1	AI195024|AL033363|CGPx|GPx-1|GSHPx-1|Gpx	glutathione peroxidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-16109001-2	chr19	16108895	16109095	+	577.0	f0_c57.idr|f1_balb.idr	Intergenic	Intergenic	-23836.0	NM_008139	14682.0	Mm.439701	NM_008139	ENSMUSG00000024639	Gnaq	1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI	guanine nucleotide binding protein, alpha q polypeptide	protein-coding	1.24792025047926	1.85108986029751	1.1613198218762	0.911362584443548	0.88835491270198	1.86665180413217	2.18654502492159	1.73397783386813	1.29667101952693	0.303995783886835	0.805768573577736
Merged-chr3-39175080-1	chr3	39174980	39175180	+	606.25	f0_c57.idr	Intergenic	Intergenic	288140.0	NM_183221	329628.0	Mm.316210	NM_183221	ENSMUSG00000046743	Fat4	6030410K14Rik|9430004M15	FAT atypical cadherin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-23419160-3	chr1	23419045	23419245	+	820.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35970.0	NM_001081079	70155.0	Mm.28013	NM_001081079	ENSMUSG00000026158	Ogfrl1	2210417C17Rik	opioid growth factor receptor-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-73450296-3	chr14	73450176	73450376	+	749.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59773.0	NM_026119	67381.0	Mm.282888	NM_026119	ENSMUSG00000022109	Med4	2410046H15Rik|DRIP36|HSPC126|TRAP36|Vdirp|Vdrip	mediator complex subunit 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-116706781-2	chr4	116706681	116706881	+	583.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025962, intron 1 of 3)	intron (NM_025962, intron 1 of 3)	1604.0	NM_025962	67096.0	Mm.252785	NM_025962	ENSMUSG00000028690	Mmachc	1810037K07Rik|CblC	methylmalonic aciduria cblC type, with homocystinuria	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72599900-2	chr6	72599800	72600000	+	688.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026159, intron 1 of 10)	B1_Mur3|SINE|Alu	1272.0	NM_026159	67442.0	Mm.305108	NM_026159	ENSMUSG00000056666	Retsat	0610039N19Rik|C80029|MMT-7|Ppsig	retinol saturase (all trans retinol 13,14 reductase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-8675683-6	chr5	8675550	8675750	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011076, intron 6 of 29)	Tigger7|DNA|TcMar-Tigger	-52698.0	NM_198620	242819.0	Mm.332192	NM_198620	ENSMUSG00000040570	Rundc3b	Gm440	RUN domain containing 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-79930751-2	chr10	79930651	79930851	+	655.666626	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_007880, exon 2 of 9)	5' UTR (NM_007880, exon 2 of 9)	3410.0	NM_001288625	13496.0	Mm.301282	NM_007880	ENSMUSG00000019564	Arid3a	Bright|Dri1|Dril1	AT rich interactive domain 3A (BRIGHT-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-86521510-2	chr6	86521410	86521610	+	599.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4679.0	NM_011865	23983.0	Mm.274146	NM_011865	ENSMUSG00000051695	Pcbp1	WBP17|[a]CP-1|alphaCP-1|hnRNP E1|hnRNP-E1	poly(rC) binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-92893716-4	chr7	92893625	92893825	+	729.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028243, intron 1 of 8)	B2_Mm2|SINE|B2	18472.0	NM_028243	72461.0	Mm.389969	NM_028243	ENSMUSG00000061119	Prcp	2510048K03Rik|2610104A14Rik|AI451719|HUMPCP|PCP	prolylcarboxypeptidase (angiotensinase C)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-38820343-4	chr9	38820285	38820485	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4977.0	NM_146781	258777.0	Mm.223208	NM_146781	ENSMUSG00000043911	Olfr922	MOR161-3	olfactory receptor 922	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-11558237-4	chr8	11558124	11558324	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302459)	promoter-TSS (NM_001302459)	-186.0	NM_001302459	26356.0	Mm.25709	NM_011919	ENSMUSG00000045969	Ing1	2610028J21Rik|AA407184|AI875420|mING1h|p33Ing1|p37Ing1b	inhibitor of growth family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83536596-4	chr11	83536492	83536692	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6074.0	NM_013653	20304.0	Mm.284248	NM_013653	ENSMUSG00000035042	Ccl5	MuRantes|RANTES|SISd|Scya5|TCP228	chemokine (C-C motif) ligand 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-68694519-1	chr7	68694419	68694619	+	1000.0	f1_balb.idr	Intergenic	Intergenic	54719.0	NM_001042592	66412.0	Mm.251199	NM_025549	ENSMUSG00000042659	Arrdc4	2410003C09Rik|AV216361	arrestin domain containing 4	protein-coding	-0.493704461970091	-0.856012208689772	-0.861665239843445	-0.863959728756569	-0.867195858719446	-0.356270977638719	-0.861008654254567	-0.863559148558191	0.555099020488173	0.856610390725557	1
Merged-chr7-80837187-2	chr7	80837106	80837306	+	735.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24902.0	NM_009553	22691.0	Mm.358645	NM_009553	ENSMUSG00000038797	Zscan2	Zfp-29|Zfp29	zinc finger and SCAN domain containing 2	protein-coding	-0.0330114560221713	-0.42329871224554	0.47070541908631	-0.431792161085624	-0.437054230797075	-0.42222286257759	-0.427027224467793	-0.43114351540297	-3.71077628940249	0.150877123105756	1
Merged-chr4-9136009-4	chr4	9135949	9136149	+	915.1749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-133244.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-38053640-2	chr19	38053583	38053783	+	676.775024	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1301.0	NM_028293	74107.0	Mm.9916	NM_028293	ENSMUSG00000024989	Cep55	1200008O12Rik|2700032M20Rik	centrosomal protein 55	protein-coding	2.43357781382419	2.72629058782013	1.94307826372887	2.65899404143166	2.91744852108094	1.79826577999348	2.42557649309956	2.84385219422615	0.218844728561133	0.78714387038462	0.998431161219273
Merged-chr10-26797502-4	chr10	26797393	26797593	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176837, intron 1 of 14)	intron (NM_176837, intron 1 of 14)	24981.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-63129945-3	chr9	63129830	63130030	+	681.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17050.0	NM_172446	207667.0	Mm.36349	NM_172446	ENSMUSG00000022245	Skor1	AV273001|C230094B15Rik|Corl1|Lbxcor1	SKI family transcriptional corepressor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-40732163-2	chr19	40732063	40732263	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001304721, intron 7 of 9)	L1_Mus4|LINE|L1	72393.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	0.122913408539926	0.117149806343802	-0.230908621389362	0.376653660100922	-0.238879397962757	-0.225640426754486	-0.229961712926421	-0.233639158805012	-3.67788854489698	0.119780640642039	1
Merged-chr16-36798505-3	chr16	36798404	36798604	+	866.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134111, intron 5 of 5)	ORR1A3-int|LTR|ERVL-MaLR	10201.0	NM_001113405	106389.0	Mm.432078	NM_134111	ENSMUSG00000022838	Eaf2	AW048865|FESTA-L|FESTA-S|Festa|Traits|U19	ELL associated factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-34872590-2	chr6	34872490	34872690	+	774.666687	f1_balb.idr|f1_c57bl6.idr	exon (NM_197986, exon 2 of 2)	exon (NM_197986, exon 2 of 2)	5475.0	NM_199145	78412.0	Mm.248440	NM_199145	ENSMUSG00000046806	3110062M04Rik	AL023049|Cyren|Mri	RIKEN cDNA 3110062M04 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4166572-2	chr19	4166472	4166672	+	964.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134148, intron 9 of 9)	intron (NM_134148, intron 9 of 9)	-3189.0	NR_153659	58988.0	Mm.271937	NM_021485	ENSMUSG00000024830	Rps6kb2	S6K-beta-2|S6K2	ribosomal protein S6 kinase, polypeptide 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80028524-2	chr7	80028424	80028624	+	709.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175433, intron 1 of 4)	intron (NM_175433, intron 1 of 4)	2296.0	NM_175433	209225.0	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-22049511-2	chr9	22049411	22049611	+	559.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010487, intron 1 of 6)	intron (NM_010487, intron 1 of 6)	2512.0	NM_010487	15571.0	Mm.390167	NM_010487	ENSMUSG00000003410	Elavl3	2600009P04Rik|Huc|PLE21|mHuC	ELAV like RNA binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-137898526-4	chr1	137898436	137898636	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-67919.0	NR_029795	735252.0		NR_029795	ENSMUSG00000065565	Mir181a-1	Mirn181a-1|Mirn213|miR-213|mir-181a-1|mmu-mir-213	microRNA 181a-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-32309606-4	chr19	32309505	32309705	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 2 of 9)	MTD|LTR|ERVL-MaLR	39711.0	NM_001168525	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-158154197-4	chr2	158154090	158154290	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7798.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-3187017-2	chr8	3186917	3187117	+	611.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001330056, intron 9 of 21)	ID_B1|SINE|B4	92600.0	NM_010568	16337.0	Mm.268003	NM_010568	ENSMUSG00000005534	Insr	4932439J01Rik|CD220|D630014A15Rik|IR|IR-A|IR-B	insulin receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-99375164-2	chr5	99375064	99375264	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-122237.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-11637895-3	chr17	11637796	11637996	+	638.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016694, intron 7 of 11)	intron (NM_016694, intron 7 of 11)	245293.0	NR_045808	52027.0	Mm.442257	NR_045808		D17Ertd648e	-	DNA segment, Chr 17, ERATO Doi 648, expressed	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-95859930-2	chr9	95859867	95860067	+	660.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_019864, intron 1 of 46)	B2_Mm2|SINE|B2	-2085.0	NM_001271569	73410.0	Mm.443314	NM_028533	ENSMUSG00000096655	1700065D16Rik	-	RIKEN cDNA 1700065D16 gene	protein-coding	-0.349449297774628	0.127274749063267	-0.341861482905003	-0.344723016638194	-0.212186579945169	-0.3372941380504	-0.171327176663455	0.0610304634299466	0.490557992971582	0.836000472610299	1
Merged-chr15-27921413-2	chr15	27921313	27921513	+	700.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081302, intron 1 of 56)	intron (NM_001081302, intron 1 of 56)	104435.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-21671659-2	chr10	21671559	21671759	+	899.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	-19186.0	NR_045843	432436.0	Mm.244553	NM_001004162	ENSMUSG00000056716	Gm5420	EG432436	predicted gene 5420	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-108477174-4	chr6	108477067	108477267	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 46 of 61)	intron (NM_010585, intron 46 of 61)	-12576.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	2.30274880756404	1.67399479188282	3.18663698215525	2.74667590600117	3.20898629135246	4.03247606039404	4.3447365277555	4.09507265266063	2.18449982175731	0.000664754747297014	0.0140312990384346
Merged-chr5-66242136-2	chr5	66242061	66242261	+	582.0	f0_c57.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-17737.0	NM_001302833	70918.0	Mm.23166	NM_027602	ENSMUSG00000029206	Nsun7	4921525L17Rik	NOL1/NOP2/Sun domain family, member 7	protein-coding	0.0510039708181695	0.667491205662834	0.0620641153762549	0.0579038452171336	0.317884436189738	0.421266412626236	0.0632540076931875	0.479587287935983	0.60319955276842	0.771527197341879	1
Merged-chr18-5803130-4	chr18	5803028	5803228	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	210481.0	NM_001360981	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-105018535-2	chr3	105018435	105018635	+	586.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030249, intron 3 of 5)	RSINE1|SINE|B4	34418.0	NM_001163332	80281.0	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-90731653-2	chr5	90731557	90731757	+	744.375	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-27641.0	NM_009141	20311.0	Mm.4660	NM_009141	ENSMUSG00000029371	Cxcl5	AMCF-II|Cxcl6|ENA-78|GCP-2|LIX|Scyb5|Scyb6	chemokine (C-X-C motif) ligand 5	protein-coding	2.05774209124756	1.3466618365134	1.77432605263648	2.92720145972629	2.67713059426908	1.84605369673613	2.37177968724652	2.29734546506911	0.335988961802724	0.724517423361445	0.998431161219273
Merged-chr2-5640558-2	chr2	5640458	5640658	+	613.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290374, intron 1 of 9)	B4A|SINE|B4	35488.0	NM_001290376	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-83166806-4	chr15	83166706	83166906	+	989.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029787, intron 1 of 8)	intron (NM_029787, intron 1 of 8)	5402.0	NM_029787	109754.0	Mm.22560	NM_029787	ENSMUSG00000018042	Cyb5r3	0610016L08Rik|2500002N19Rik|C85115|Dia-1|Dia1|WU:AL591952.1-001|WU:AL591952.1-002|WU:AL591952.1-003|WU:Cyb5r3	cytochrome b5 reductase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-164081130-3	chr1	164081053	164081253	+	924.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011346)	TTS (NM_011346)	19077.0	NM_011346	20343.0	Mm.1461	NM_011346	ENSMUSG00000026581	Sell	AI528707|CD62L|L-selectin|LECAM-1|Lnhr|Ly-22|Ly-m22|Lyam-1|Lyam1	selectin, lymphocyte	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-18452333-2	chr9	18452233	18452433	+	554.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	21226.0	NM_028935	72230.0	Mm.289689	NM_028160	ENSMUSG00000074500	Zfp558	1700007A21Rik|4932704I17Rik|Zfp558-ps	zinc finger protein 558	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-113446331-4	chr13	113446259	113446459	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_045501)	TTS (NR_045501)	56485.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-143466259-4	chr5	143466273	143466473	+	860.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144915, intron 1 of 14)	ID_B1|SINE|B4	1880.0	NM_144915	231871.0	Mm.469963	NM_144915	ENSMUSG00000039206	Daglb	E330036I19Rik	diacylglycerol lipase, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-3498388-4	chr6	3498310	3498510	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024260)	promoter-TSS (NM_024260)	17.0	NM_001167750	73288.0	Mm.45539	NM_024260	ENSMUSG00000001376	Vps50	1700034M03Rik|8430415E05Rik|BLM|C87205|Ccdc132|mKIAA1861	VPS50 EARP/GARPII complex subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-50674756-4	chr17	50674663	50674863	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013880, intron 5 of 5)	LTR48B|LTR|ERV1	-23918.0	NM_001297747	12228.0	Mm.392910	NM_009770	ENSMUSG00000022863	Btg3	ANA|tob5	B cell translocation gene 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-38929289-7	chr18	38929020	38929220	+	946.5578	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033789, intron 3 of 4)	intron (NM_001033789, intron 3 of 4)	-10421.0	NM_010197	14164.0	Mm.241282	NM_010197	ENSMUSG00000036585	Fgf1	Dffrx|Fam|Fgf-1|Fgfa	fibroblast growth factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64374039-1	chr5	64373939	64374139	+	826.0	f1_c57bl6.idr	Intergenic	Intergenic	93903.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	0.125356034909487	0.512686892505684	0.924947329732191	0.133820529529066	0.279804096516873	0.146930069909629	0.140346046533265	0.693488854116316	-0.856095367927944	0.669981318210624	1
Merged-chr3-51475916-4	chr3	51475802	51476002	+	920.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_053089)	TTS (NM_053089)	-8064.0	NM_016858	19338.0	Mm.1664	NM_016858	ENSMUSG00000027739	Rab33b	-	RAB33B, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-101542565-4	chr14	101542476	101542676	+	954.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081278, intron 1 of 18)	intron (NM_001081278, intron 1 of 18)	66615.0	NM_001081278	210789.0	Mm.320639	NM_173380	ENSMUSG00000033083	Tbc1d4	5930406J04Rik|A930035N22|AV295684|As160	TBC1 domain family, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-85526381-2	chr11	85526281	85526481	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_138681, intron 16 of 25)	UCON26|Unknown|Unknown	173217.0	NM_001166643	192197.0	Mm.209989	NM_138681	ENSMUSG00000059439	Bcas3	1500019F07Rik|2610028P08Rik|AU021018|BC028339|K20D4|rudhira	breast carcinoma amplified sequence 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91933735-2	chr2	91933635	91933835	+	689.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166597, intron 31 of 31)	intron (NM_001166597, intron 31 of 31)	-1438.0	NM_010784	17242.0	Mm.906	NM_010784	ENSMUSG00000027239	Mdk	MK|Mek	midkine	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-43434677-2	chr11	43434577	43434777	+	575.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198936, intron 1 of 15)	B3A|SINE|B2	946.0	NM_198936	193116.0	Mm.28200	NM_148673	ENSMUSG00000020409	Slu7	AU018913|D11Ertd730e|D3Bwg0878e	SLU7 splicing factor homolog (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-6209358-3	chr2	6209266	6209466	+	638.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024208, intron 1 of 4)	intron (NM_024208, intron 1 of 4)	3628.0	NM_024208	67856.0	Mm.38342	NM_024208	ENSMUSG00000039063	Echdc3	2310005D12Rik|AI662097	enoyl Coenzyme A hydratase domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-81536357-4	chr17	81536269	81536469	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 2 of 8)	intron (NR_104580, intron 2 of 8)	202018.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-151543043-3	chr2	151542961	151543161	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_126058, intron 2 of 3)	CpG-8654	578.0	NM_001302078	14225.0	Mm.278458	NM_008019	ENSMUSG00000032966	Fkbp1a	FKBP12|Fkbp|Fkbp1	FK506 binding protein 1a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-21446963-4	chr13	21446870	21447070	+	954.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_151504)	TTS (NR_151504)	1810.0	NR_035441	100316752.0		NR_035441	ENSMUSG00000084590	Mir1896	Mirn1896|mmu-mir-1896	microRNA 1896	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-126594163-4	chr2	126594121	126594321	+	795.75	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008230, exon 12 of 12)	exon (NM_008230, exon 12 of 12)	24457.0	NM_008230	15186.0	Mm.18603	NM_008230	ENSMUSG00000027360	Hdc	AW108189|Hdc-a|Hdc-c|Hdc-e|Hdc-s	histidine decarboxylase	protein-coding	0.935171487494193	1.22917678353149	1.66653207802768	1.73112067623974	1.54363919072884	0.995813320635163	2.00645924829427	1.93830078399562	0.81104832649041	0.514652072217129	0.947017304411256
Merged-chr7-19851589-2	chr7	19851489	19851689	+	723.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001270489)	promoter-TSS (NM_001270489)	-414.0	NM_001270489	100502736.0	Mm.445354	NM_001270489	ENSMUSG00000092216	Gm19345	-	predicted gene, 19345	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-114661677-1	chr5	114661577	114661777	+	630.0	f1_balb.idr	Intergenic	RMER15|LTR|ERVL	-3256.0	NM_022017	63873.0	Mm.266450	NM_022017	ENSMUSG00000014158	Trpv4	0610033B08Rik|OTRPC4|Trp12|VR-OAC|VRL-2|VROAC	transient receptor potential cation channel, subfamily V, member 4	protein-coding	0.673944338118988	0.542792554948002	1.26734254678237	0.524788576287	1.46052931877607	0.545057664423612	0.903038256346931	1.00383102849045	1.06315033896188	0.511976722850334	0.945260181117916
Merged-chr2-132695813-4	chr2	132695578	132695778	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028637, intron 2 of 2)	intron (NM_028637, intron 2 of 2)	5080.0	NM_028637	73747.0	Mm.284114	NM_028637	ENSMUSG00000044991	1110034G24Rik	-	RIKEN cDNA 1110034G24 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-48998790-3	chr13	48998687	48998887	+	677.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30675.0	NR_015601	68128.0	Mm.426304	NR_015601		Fam120aos	C030044B11Rik	family with sequence similarity 120A, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-68590749-3	chr8	68590653	68590853	+	992.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172753, intron 2 of 9)	intron (NM_172753, intron 2 of 9)	144393.0	NM_001252623	234356.0	Mm.334569	NM_172753	ENSMUSG00000036356	Csgalnact1	4732435N03Rik|CSGalNAcT-1	chondroitin sulfate N-acetylgalactosaminyltransferase 1	protein-coding	5.15460528065823	4.80722485909447	5.13717405158356	5.01332907950005	2.24570585361229	1.83176397862955	3.77366603848982	2.75711794400449	-2.97344472541198	1.11048176494026e-08	1.31482502129144e-06
Merged-chr15-86364049-4	chr15	86363906	86364106	+	965.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358062, intron 6 of 9)	intron (NM_001358062, intron 6 of 9)	86331.0	NM_001358062	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-9988258-19	chr19	9988149	9988349	+	911.7510990000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011913, intron 9 of 11)	intron (NM_011913, intron 9 of 11)	5603.0	NM_010239	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80097481-2	chr10	80097381	80097581	+	645.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359637, intron 1 of 3)	intron (NM_001359637, intron 1 of 3)	3706.0	NM_001359635	216161.0	Mm.262102	NM_183426	ENSMUSG00000035673	Sbno2	BC019206|F730040C21|Sno|Stno	strawberry notch 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43547347-4	chr4	43547257	43547457	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011602, intron 19 of 56)	intron (NM_011602, intron 19 of 56)	15226.0	NM_011602	21894.0	Mm.208601	NM_011602	ENSMUSG00000028465	Tln1	Tln	talin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-41586642-1	chr3	41586542	41586742	+	542.0	f1_c57bl6.idr	intron (NM_001130184, intron 2 of 10)	intron (NM_001130184, intron 2 of 10)	21762.0	NM_001130186	269424.0	Mm.286285	NM_172303	ENSMUSG00000025764	Jade1	AU041499|D530048A03Rik|Phf17|mKIAA1807	jade family PHD finger 1	protein-coding	1.1065775163445	0.397683406605429	0.390097177288695	0.820296402711479	0.961506300738905	0.399389553376752	0.391772875806077	0.826469137924356	-0.261581744178341	0.886827334790567	1
Merged-chr15-84996449-2	chr15	84996349	84996549	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8478.0	NM_001033273	223739.0	Mm.323925	NM_001033273	ENSMUSG00000036046	5031439G07Rik	AW554572|mKIAA0930	RIKEN cDNA 5031439G07 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-57681922-3	chr11	57681782	57681982	+	822.622253	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134189, intron 1 of 11)	intron (NM_134189, intron 1 of 11)	-32388.0	NR_153850	78762.0	Mm.362149	NR_153850		4933424L21Rik	-	RIKEN cDNA 4933424L21 gene	ncRNA	0.749399602512506	1.81585974428042	0.787078170187607	0.77319502484451	0.952040770108828	1.83217308250337	1.52327880417729	1.78968382688551	1.4957966232795	0.291501275454668	0.796128548904676
Merged-chr7-78913901-4	chr7	78913774	78913974	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113527)	promoter-TSS (NM_001113527)	109.0	NM_020583	57444.0	Mm.322843	NM_020583	ENSMUSG00000039236	Isg20	1600023I01Rik|2010107M23Rik|20kDa|DnaQL|HEM45	interferon-stimulated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-67800056-4	chr18	67799968	67800168	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045376)	promoter-TSS (NR_045376)	-39.0	NM_027556	70799.0	Mm.30857	NM_027556	ENSMUSG00000024542	Cep192	4631422C13Rik|D430014P18Rik	centrosomal protein 192	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-32786180-4	chr12	32786054	32786254	+	862.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1E1A|LTR|ERVL-MaLR	-34181.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115003455-3	chr5	115003385	115003585	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8039.0	NM_029012	74585.0	Mm.355894	NM_029012	ENSMUSG00000029550	Sppl3	4833416I09Rik|Psl4|Usmg3	signal peptide peptidase 3	protein-coding	1.96454398590719	1.61016538644212	1.26530089593254	1.22969284784663	3.15155299790914	3.05822890942508	3.10454582181903	2.77478872498089	3.47295394642972	0.000257480806188528	0.00653522141380449
Merged-chr5-105154001-3	chr5	105153885	105154085	+	669.944458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13D3|LTR|ERVK	-14399.0	NM_001359080	17472.0	Mm.440525	NM_008620	ENSMUSG00000079363	Gbp4	AW228052|Mag-2|Mpa-2|Mpa2	guanylate binding protein 4	protein-coding	1.11654826160736	0.909718090600411	0.980959947633209	0.388823883636589	0.778170338779974	0.40431060115512	0.396531625634849	0.389872728743491	-2.3380806635036	0.207688113085306	1
Merged-chr4-47302817-2	chr4	47302717	47302917	+	752.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_009928, intron 33 of 39)	intron (NM_009928, intron 33 of 39)	-50405.0	NM_001312868	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-95552409-2	chr6	95552309	95552509	+	555.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001326558, intron 9 of 10)	intron (NM_001326558, intron 9 of 10)	140473.0	NM_001326558	20917.0	Mm.371585	NM_011507	ENSMUSG00000061838	Suclg2	AF171077|AW556404|D6Wsu120e|G-SCS|GTPSCS|SCS-betaG	succinate-Coenzyme A ligase, GDP-forming, beta subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-55542280-2	chr9	55542180	55542380	+	887.599976	f1_balb.idr|f1_c57bl6.idr	exon (NM_027397, exon 2 of 6)	exon (NM_027397, exon 2 of 6)	1131.0	NM_027397	104360.0	Mm.273996	NM_027397	ENSMUSG00000032318	Isl2	3110001N10Rik	insulin related protein 2 (islet 2)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-99127059-2	chr10	99126959	99127159	+	938.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_153333, intron 3 of 12)	intron (NR_153333, intron 3 of 12)	18924.0	NM_015737	14426.0	Mm.314	NM_015737	ENSMUSG00000090035	Galnt4	AV011803	polypeptide N-acetylgalactosaminyltransferase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19695895-2	chr7	19695795	19695995	+	583.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_009696)	TTS (NM_009696)	2503.0	NM_001305819	11816.0	Mm.305152	NM_009696	ENSMUSG00000002985	Apoe	AI255918|Apo-E	apolipoprotein E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-154258095-2	chr1	154257995	154258195	+	678.833374	f1_balb.idr|f1_c57bl6.idr	intron (NR_108050, intron 1 of 2)	MIR3|SINE|MIR	-1189.0	NR_040629	78112.0	Mm.401935	NR_040629	ENSMUSG00000099933	4930452N14Rik	-	RIKEN cDNA 4930452N14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-79929442-2	chr10	79929342	79929542	+	584.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001288625, intron 1 of 8)	intron (NM_001288625, intron 1 of 8)	2101.0	NM_001288625	13496.0	Mm.301282	NM_007880	ENSMUSG00000019564	Arid3a	Bright|Dri1|Dril1	AT rich interactive domain 3A (BRIGHT-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-33115018-3	chr11	33114916	33115116	+	927.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32384.0	NM_008005	14172.0	Mm.339812	NM_008005	ENSMUSG00000057967	Fgf18	D130055P09Rik|FGF-18	fibroblast growth factor 18	protein-coding	1.597817608094	0.795881372022377	0.776779032215927	0.761600162255376	1.70753133999783	2.31033816194127	1.02649542189258	1.343899379005	2.17621073927147	0.116328716688846	0.534482490234659
Merged-chr4-74252691-4	chr4	74252565	74252765	+	993.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356561, intron 1 of 20)	intron (NM_001356561, intron 1 of 20)	786.0	NM_001356561	76804.0	Mm.209059	NM_144787	ENSMUSG00000028397	Kdm4c	2410141F18Rik|AA517467|Gasc1|Jmjd2c	lysine (K)-specific demethylase 4C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-112643137-2	chr12	112643037	112643237	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A3|LTR|ERVL-MaLR	-1691.0	NM_001161737	30954.0	Mm.289812	NM_013929	ENSMUSG00000064326	Siva1	CD27bp|Siva	SIVA1, apoptosis-inducing factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27839280-1	chr17	27839180	27839380	+	623.0	f1_balb.idr	promoter-TSS (NM_011432)	promoter-TSS (NM_011432)	-807.0	NM_011432	20630.0	Mm.103949	NM_011432	ENSMUSG00000024217	Snrpc	Snrp1c|U1-C|U1C	U1 small nuclear ribonucleoprotein C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-79677839-1	chr2	79677739	79677939	+	915.0	f0_balb.idr	Intergenic	Intergenic	-29941.0	NM_172420	75276.0	Mm.257373	NM_172420	ENSMUSG00000034683	Ppp1r1c	4930565M23Rik|4930579P15Rik	protein phosphatase 1, regulatory (inhibitor) subunit 1C	protein-coding	0.339284548376126	-0.257722358480445	-0.261756110288208	0.0236032129940839	0.0936529515586477	-0.256810869545631	-0.260867819675868	-0.264316201129851	-1.39622684475466	0.572450220511185	1
Merged-chr8-72475932-2	chr8	72475832	72476032	+	872.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138585)	promoter-TSS (NM_138585)	-699.0	NM_138585	27967.0	Mm.30136	NM_138585	ENSMUSG00000052488	Cherp	5730408I11Rik|D8Wsu96e|DAN16|Scaf6	calcium homeostasis endoplasmic reticulum protein	protein-coding	1.72604420727336	2.09056821856458	0.864131645289726	1.08754731466526	1.37980578144094	2.54002986809192	0.869338936282903	1.09320784841816	0.353471023625886	0.783041934426921	0.998431161219273
Merged-chr6-31208868-2	chr6	31208768	31208968	+	726.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_110469, intron 1 of 3)	URR1B|DNA|hAT-Charlie	9606.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-20674272-4	chr14	20674192	20674392	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001168273)	promoter-TSS (NM_001168273)	-29.0	NM_172596	218811.0	Mm.173119	NM_172596	ENSMUSG00000039367	Sec24c	2610204K03Rik|mKIAA0079	Sec24 related gene family, member C (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47737034-4	chr17	47736932	47737132	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161723)	promoter-TSS (NM_001161723)	-5.0	NM_001161722	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-105787333-3	chr7	105787151	105787351	+	883.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162943, intron 1 of 20)	C-rich|Low_complexity|Low_complexity	299.0	NM_001162943	233651.0	Mm.334108	NM_001162943	ENSMUSG00000036862	Dchs1	3110041P15Rik|C130033F22Rik|CDH25|FIB1|Gm165|PCDH16	dachsous cadherin related 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117944088-4	chr10	117943983	117944183	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045342, intron 3 of 3)	MTC|LTR|ERVL-MaLR	18624.0	NR_045342	71067.0	Mm.410793	NR_045342	ENSMUSG00000112500	4933411E08Rik	-	RIKEN cDNA 4933411E08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-83362028-2	chr10	83361928	83362128	+	935.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026579, intron 1 of 3)	intron (NM_026579, intron 1 of 3)	1807.0	NM_026579	28109.0	Mm.196210	NM_026579	ENSMUSG00000020255	D10Wsu102e	AI747614|C430041I18Rik	DNA segment, Chr 10, Wayne State University 102, expressed	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3340425-2	chr12	3340325	3340525	+	640.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-24707.0	NM_008445	16570.0	Mm.7688	NM_008445	ENSMUSG00000020668	Kif3c	mKIAA4058	kinesin family member 3C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-34744879-4	chr8	34744782	34744982	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62728.0	NM_176933	319520.0	Mm.170276	NM_176933	ENSMUSG00000031530	Dusp4	2700078F24Rik|AI844617|BB104621|E130306H24Rik|MKP2	dual specificity phosphatase 4	protein-coding	4.97820205883333	5.03124930849844	4.73170162198977	5.41059132724171	2.09385339746609	3.67042064123821	2.91287818616656	3.08140034483989	-2.73566796828888	1.09320951669008e-08	1.30294646833585e-06
Merged-chr7-101873246-3	chr7	101873134	101873334	+	774.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-2446.0	NM_001252552	14275.0	Mm.2135	NM_008034	ENSMUSG00000001827	Folr1	FBP1|Folbp-1|Folbp1	folate receptor 1 (adult)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-18249517-4	chr16	18249427	18249627	+	992.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011239)	promoter-TSS (NM_011239)	644.0	NM_001081000	15547.0	Mm.271798	NM_008307	ENSMUSG00000022721	Trmt2a	Htf9c	TRM2 tRNA methyltransferase 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-106526856-2	chr7	106526729	106526929	+	870.5	f0_balb.idr|f1_balb.idr	Intergenic	Lx|LINE|L1	-85756.0	NR_003967	209380.0	Mm.461779	NM_001001318		Gm4759	EG209380	GTPase, very large interferon inducible 1 pseudogene	pseudo	2.41915734399785	1.14278510387973	1.08812278110205	1.04293251124116	2.96328105924372	4.42627558604627	2.43846715282503	2.03826913761283	3.3495869782997	0.0410345726378652	0.288919783065845
Merged-chr4-82507036-2	chr4	82506936	82507136	+	599.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_137202)	promoter-TSS (NR_137202)	-953.0	NR_137202	102635783.0	Mm.41666	NR_137202		Gm11266	-	predicted gene 11266	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-112276521-4	chr5	112276439	112276639	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001326590)	promoter-TSS (NM_001326590)	-152.0	NM_001326590	22022.0	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-5425487-1	chr13	5425387	5425587	+	563.0	f0_balb.idr	Intergenic	Intergenic	432605.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4_GL456216_random-34502-1	chr4_GL456216_random	34402	34602	+	615.0	f0_c57.idr	intron (NM_001033326, intron 5 of 6)	CpG-10796	18621.0	NM_001033326	236082.0	Mm.305345	NM_001033326	ENSMUSG00000063897	Dhrsx	C80877|D4Ertd296e|Dhrsxy|Pscad	dehydrogenase/reductase (SDR family) X chromosome	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-117327123-4	chr2	117327022	117327222	+	987.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011246, intron 2 of 16)	intron (NM_011246, intron 2 of 16)	15755.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-86572593-2	chr11	86572493	86572693	+	587.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11565.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-74357740-4	chr4	74357640	74357840	+	970.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356561, intron 15 of 20)	intron (NM_001356561, intron 15 of 20)	105861.0	NM_001356561	76804.0	Mm.209059	NM_144787	ENSMUSG00000028397	Kdm4c	2410141F18Rik|AA517467|Gasc1|Jmjd2c	lysine (K)-specific demethylase 4C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46392300-4	chr19	46392182	46392382	+	689.979187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016860, intron 1 of 10)	B3|SINE|B2	3453.0	NM_016860	54130.0	Mm.3118	NM_016860	ENSMUSG00000025228	Actr1a	Arp1|alpha-Arp1	ARP1 actin-related protein 1A, centractin alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-4279421-2	chr13	4279324	4279524	+	666.25	f0_c57.idr|f1_c57bl6.idr	promoter-TSS (NM_013777)	promoter-TSS (NM_013777)	-25.0	NM_013777	622402.0	Mm.27447	NM_013777	ENSMUSG00000021211	Akr1c12	AI266976|Akra	aldo-keto reductase family 1, member C12	protein-coding	2.49573436203115	2.26847396403879	1.69255210319379	1.78363236583791	2.18786951528132	1.10963162810445	1.33285701239513	1.06314164338693	-1.57713308592213	0.168863995489891	0.63531908954007
Merged-chr8-72006079-4	chr8	72005955	72006155	+	875.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024444, intron 2 of 12)	intron (NM_024444, intron 2 of 12)	3571.0	NM_024444	72054.0	Mm.160020	NM_024444	ENSMUSG00000003484	Cyp4f18	1810054N16Rik|Cyp4f3|Cypf18	cytochrome P450, family 4, subfamily f, polypeptide 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-137404422-3	chr6	137404309	137404509	+	822.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011216, intron 12 of 26)	intron (NM_011216, intron 12 of 26)	-6312.0	NM_001164402	19277.0	Mm.186361	NM_011216	ENSMUSG00000030223	Ptpro	D28|GLEPP1|PTPBK|PTPROt|PTPU2|PTPoc|PTPphi|Ptpn15|R-PTP-O	protein tyrosine phosphatase, receptor type, O	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55745052-3	chr14	55744950	55745150	+	745.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026403)	promoter-TSS (NM_026403)	634.0	NM_026819	52585.0	Mm.21623	NM_026819	ENSMUSG00000002332	Dhrs1	1110029G07Rik|AW112170|D14Ertd484e	dehydrogenase/reductase (SDR family) member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-34238092-2	chr13	34237992	34238192	+	941.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033167, intron 3 of 10)	intron (NM_001033167, intron 3 of 10)	75128.0	NM_001110515	69666.0	Mm.24788	NM_001101430	ENSMUSG00000071451	Psmg4	PAC-4|mPAC4	proteasome (prosome, macropain) assembly chaperone 4	protein-coding	-0.662826441749988	-1.00555184936033	-1.01675512286785	-1.01992432642343	-0.654846858003193	-1.00312405325568	-1.01421894731451	-1.01959449741028	0.0418081237259606	0.989738874530268	1
Merged-chr19-44293974-4	chr19	44293877	44294077	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_009128, exon 1 of 6)	5' UTR (NM_009128, exon 1 of 6)	301.0	NM_009128	20250.0	Mm.487021	NM_009128	ENSMUSG00000025203	Scd2	Mir5114|Scd-2|mir-5114|swty	stearoyl-Coenzyme A desaturase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-3905396-2	chr16	3905296	3905496	+	540.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_029090)	TTS (NM_029090)	3257.0	NR_153801	105246059.0		NR_153801		Gm41410	-	predicted gene, 41410	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-68220453-4	chr18	68220342	68220542	+	971.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172631, intron 3 of 5)	L1M4b|LINE|L1	-7504.0	NM_001357444	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-21613855-2	chr10	21613755	21613955	+	644.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_027968, intron 2 of 2)	intron (NR_027968, intron 2 of 2)	20710.0	NR_027968	67692.0	Mm.54306	NM_183266	ENSMUSG00000050844	1700020N01Rik	-	RIKEN cDNA 1700020N01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-8790696-2	chr10	8790562	8790762	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 4 of 19)	intron (NM_175155, intron 4 of 19)	95408.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-14886491-8	chr3	14886379	14886579	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_009801, exon 1 of 7)	5' UTR (NM_009801, exon 1 of 7)	191.0	NM_009801	12349.0	Mm.1186	NM_009801	ENSMUSG00000027562	Car2	AI131712|CAII|Ca2|Car-2|Ltw-5|Lvtw-5	carbonic anhydrase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127286441-2	chr10	127286350	127286550	+	985.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_033072, exon 6 of 13)	exon (NM_033072, exon 6 of 13)	2568.0	NM_001347171	110962.0	Mm.372826	NM_033072	ENSMUSG00000025409	Mbd6	D10Wsu93e	methyl-CpG binding domain protein 6	protein-coding	0.347590831227892	0.380769276701387	0.370094556197144	1.20312514150332	1.02975806836084	0.383151189984593	0.372464431241223	1.46439887760198	1.16526821004283	0.53839889380798	0.95416690220209
Merged-chr7-47015899-4	chr7	47015809	47016009	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR41|LTR|ERVL	-7495.0	NM_175318	101685.0	Mm.155687	NM_175318	ENSMUSG00000049516	Spty2d1	5830435K17Rik|AI852426|P16H6	SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-106886220-4	chr9	106886082	106886282	+	887.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175402, exon 1 of 1)	exon (NM_175402, exon 1 of 1)	818.0	NM_175402	109095.0	Mm.431589	NM_175402	ENSMUSG00000074102	Rbm15b	1810017N16Rik	RNA binding motif protein 15B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78599914-2	chr15	78599825	78600025	+	617.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_028195, intron 1 of 12)	intron (NM_028195, intron 1 of 12)	2878.0	NM_028195	72318.0	Mm.32911	NM_028195	ENSMUSG00000018008	Cyth4	2510004M07Rik|5830469K17Rik|AI467541|Pscd4|mFLJ00017	cytohesin 4	protein-coding	0.547722738190075	0.00529549103284915	0.667742458781086	-0.00431123975111314	0.371929434823766	0.00651756518591287	0.00106931841093699	-0.00358012457233334	-1.84300528639706	0.416166976590407	1
Merged-chr2-52785258-4	chr2	52785164	52785364	+	794.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43115.0	NM_019667	56324.0	Mm.263639	NM_019667	ENSMUSG00000055371	Stam2	1200004O12Rik|5730456G07Rik|BB145015|Hbp	signal transducing adaptor molecule (SH3 domain and ITAM motif) 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98340164-2	chr11	98340064	98340264	+	573.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8242.0	NM_144828	19049.0	Mm.45372	NM_144828	ENSMUSG00000061718	Ppp1r1b	AU040756|DARPP-32|Darpp32	protein phosphatase 1, regulatory (inhibitor) subunit 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71102679-4	chr17	71102581	71102781	+	980.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083934, intron 24 of 36)	intron (NM_001083934, intron 24 of 36)	-80851.0	NM_001357791	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78589071-4	chr15	78588978	78589178	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7489.0	NR_155437	102640742.0	Mm.253544	NR_155437	ENSMUSG00000116097	Gm36738	-	predicted gene, 36738	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135960956-2	chr5	135960856	135961056	+	957.666626	f1_balb.idr|f1_c57bl6.idr	exon (NM_001160366, exon 11 of 11)	exon (NM_001160366, exon 11 of 11)	13520.0	NM_001160366	109267.0	Mm.332750	NM_001160366	ENSMUSG00000029699	Ssc4d	C330016E03Rik|S4D-SRCRB|SRCRB-S4D|Srcrb4d	scavenger receptor cysteine rich family, 4 domains	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84042630-3	chr8	84042576	84042776	+	645.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016671)	promoter-TSS (NM_016671)	-101.0	NM_016671	50931.0	Mm.38386	NM_016671	ENSMUSG00000005465	Il27ra	CRL1|IL-27R|Tccr|WSX-1|Wsx1|zcytor1	interleukin 27 receptor, alpha	protein-coding	0.803436449659946	0.859674387364562	1.25994644370113	1.37495733174652	1.30965560551739	1.48765873225139	2.29770603839231	1.38282435589357	2.14772640960695	0.0956976800638158	0.479874936781414
Merged-chr3-129724197-3	chr3	129724103	129724303	+	823.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010113, intron 6 of 23)	intron (NM_010113, intron 6 of 23)	883.0	NM_001310737	13645.0	Mm.252481	NM_010113	ENSMUSG00000028017	Egf	AI790464	epidermal growth factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-50315709-2	chr16	50315609	50315809	+	660.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_027444, intron 3 of 16)	intron (NM_027444, intron 3 of 16)	116680.0	NM_027444	70508.0	Mm.28940	NM_027444	ENSMUSG00000022641	Bbx	5530401J07Rik|5730403O13Rik	bobby sox HMG box containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-9596957-2	chr6	9596857	9597057	+	632.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17D|LTR|ERVK	646938.0	NM_008751	18231.0	Mm.46954	NM_008751	ENSMUSG00000046178	Nxph1	C130005L03Rik	neurexophilin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-33384044-2	chr4	33383944	33384144	+	797.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001305273, intron 12 of 15)	intron (NM_001305273, intron 12 of 15)	-54037.0	NR_106198	102465904.0		NR_106198	ENSMUSG00000098310	Mir8118	Gm27954|mmu-mir-8118	microRNA 8118	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-51732555-2	chr15	51732455	51732655	+	548.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	132906.0	NM_080635	68135.0	Mm.289800	NM_080635	ENSMUSG00000022312	Eif3h	1110008A16Rik|40kD|9430017H16Rik|EIF3-P40|EIF3-gamma|Eif3s3	eukaryotic translation initiation factor 3, subunit H	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-118126913-2	chr10	118126816	118127016	+	784.0	f0_balb.idr|f1_balb.idr	Intergenic	URR1B|DNA|hAT-Charlie	-14871.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	2.94850260627654	2.66638934299082	3.65653507868572	1.56226445025283	2.75970950568269	3.95336141038905	4.31023228908727	4.56582764258997	1.69741150759482	0.0129799019888482	0.131088269412626
Merged-chr8-94442240-2	chr8	94442140	94442340	+	682.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7137.0	NR_015514	320377.0	Mm.486022	NR_015514		9330175E14Rik	A630085K21	RIKEN cDNA 9330175E14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34027363-4	chr17	34027291	34027491	+	967.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008202)	TTS (NM_008202)	664.0	NM_013543	14979.0	Mm.275452	NM_013543	ENSMUSG00000073422	H2-Ke6	D17H6S112E|H-2Ke6|Hsd17b8|Ke-6|Ke6|Ring2	H2-K region expressed gene 6	protein-coding	4.13337965808043	4.38670641804201	4.07691005804787	4.38188646554691	3.80110477961428	3.49124827482201	3.75031459578063	4.15912411900297	-0.579882541567582	0.185440613181384	0.661237998326476
Merged-chr18-50030907-5	chr18	50030653	50030853	+	939.8666380000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360935)	promoter-TSS (NM_001360935)	-231.0	NM_001360935	106869.0	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	-1.27019771385087	-1.24210814412887	-1.25266437872947	-1.26133558413341	-1.26974192642364	-1.07372280185361	-1.25027467860197	-0.824525533001554	2.50806194279963	0.447256732080241	1
Merged-chr2-5845108-6	chr2	5845054	5845254	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356501)	promoter-TSS (NM_001356501)	23.0	NM_001356502	98828.0	Mm.181490	NM_133837	ENSMUSG00000039128	Cdc123	AA959893|G431001I09Rik	cell division cycle 123	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-47155238-1	chr19	47155138	47155338	+	606.0	f1_balb.idr	Intergenic	MTC|LTR|ERVL-MaLR	-11064.0	NM_001081271	546729.0	Mm.439624	NM_001081271	ENSMUSG00000079258	Calhm1	EG546729	calcium homeostasis modulator 1	protein-coding	2.46382704111329	1.13013441806029	1.95589845317243	1.89829857469415	1.43025609963846	1.13498919057018	1.97200908615252	1.90850819898133	-0.84069361366528	0.459888356278216	0.920651307678635
Merged-chr10-62606251-2	chr10	62606151	62606351	+	628.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3953.0	NM_019553	56200.0	Mm.413275	NM_019553	ENSMUSG00000020075	Ddx21	AI255159|AL022742|D10Ertd645e|D10Wsu42e	DEAD (Asp-Glu-Ala-Asp) box polypeptide 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31383585-2	chr14	31383485	31383685	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347585, intron 3 of 7)	intron (NM_001347585, intron 3 of 7)	34092.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-44139160-4	chr16	44139064	44139264	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028108)	promoter-TSS (NM_028108)	95.0	NM_001358203	11964.0	Mm.217787	NM_007508	ENSMUSG00000052459	Atp6v1a	AI647066|Atp6a1|Atp6a2|Atp6v1a1|VA68|VPP2	ATPase, H+ transporting, lysosomal V1 subunit A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-101821450-2	chr5	101821350	101821550	+	622.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_173370, exon 13 of 13)	exon (NM_173370, exon 13 of 13)	56320.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-104021927-4	chr5	104021837	104022037	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053262)	promoter-TSS (NM_053262)	-141.0	NM_053262	114664.0	Mm.46019	NM_053262	ENSMUSG00000029311	Hsd17b11	Dhrs8|Pan1b|SDR2|retSDR2	hydroxysteroid (17-beta) dehydrogenase 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-142386296-2	chr7	142386200	142386400	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009983, intron 1 of 8)	intron (NM_009983, intron 1 of 8)	1570.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-83433064-4	chr4	83432969	83433169	+	929.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029949, intron 3 of 8)	intron (NM_029949, intron 3 of 8)	15345.0	NM_029949	77634.0	Mm.271985	NM_029949	ENSMUSG00000028483	Snapc3	1810020H02Rik|4930558A07Rik|5031401C21Rik|AI414457|E030018J20Rik	small nuclear RNA activating complex, polypeptide 3	protein-coding	1.54120323478353	1.50458093290331	1.83485522980174	2.05268698171611	2.41334984377502	1.25022926091508	2.76707450211874	2.37399955028616	1.43996213106077	0.152344376228861	0.605910723135302
Merged-chr3-54809346-2	chr3	54809246	54809446	+	675.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-1555.0	NM_133231	170767.0	Mm.185735	NM_133231	ENSMUSG00000036615	Rfxap	5730495K23Rik	regulatory factor X-associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-65635907-4	chr17	65635787	65635987	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3869.0	NM_153519	213272.0	Mm.255732	NM_153519	ENSMUSG00000050612	Txndc2	AU021712|Sptrx-1|Sptrx1|Trx4	thioredoxin domain containing 2 (spermatozoa)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70712580-3	chr8	70712506	70712706	+	794.228577	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5937.0	NM_001195253	100502950.0	Mm.52981	NM_001195253	ENSMUSG00000095026	Gm3336	100041434|2410018E23Rik	predicted gene 3336	protein-coding	0.665383981115616	1.23128253927257	0.547379330636185	1.13953822840501	0.993516611976937	0.739478572076416	0.548854555846271	0.697478333444716	-1.03073903727304	0.517079604733794	1
Merged-chr9-58799094-2	chr9	58798994	58799194	+	690.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24418.0	NM_001081192	330953.0	Mm.151967	NM_001081192	ENSMUSG00000032338	Hcn4	Bcng3|Hcn3	hyperpolarization-activated, cyclic nucleotide-gated K+ 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-119470450-4	chr12	119470338	119470538	+	882.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	27028.0	NM_001163136	238455.0	Mm.31376	NM_001163136	ENSMUSG00000041886	Macc1	4732474O15Rik|Gm267	metastasis associated in colon cancer 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-10322726-2	chr10	10322626	10322826	+	593.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	149588.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115895588-2	chr11	115895503	115895703	+	590.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_130454, intron 12 of 18)	intron (NM_130454, intron 12 of 18)	-4536.0	NM_183259	66528.0	Mm.275740	NM_183259	ENSMUSG00000048442	Smim5	2210020M01Rik	small integral membrane protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-75436124-4	chr9	75436030	75436230	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5394.0	NM_001039522	235497.0	Mm.41508	NM_001006122	ENSMUSG00000042487	Leo1	Gm185	Leo1, Paf1/RNA polymerase II complex component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-107357000-3	chr3	107356924	107357124	+	922.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23735.0	NM_001045807	229700.0	Mm.27966	NM_001045807	ENSMUSG00000048109	Rbm15	C230088J01Rik|mKIAA1438	RNA binding motif protein 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-125472407-2	chr1	125472307	125472507	+	834.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A1|LTR|ERVL-MaLR	-36680.0	NM_001205385	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16826068-2	chr7	16825968	16826168	+	588.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039878, intron 4 of 17)	intron (NM_001039878, intron 4 of 17)	-9336.0	NM_173430	243853.0	Mm.39703	NM_173430	ENSMUSG00000048920	Fkrp	A830029B19Rik|AI842067|AI847300|LGMD1I|MDC1C	fukutin related protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-88842215-4	chr6	88842120	88842320	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030251)	promoter-TSS (NM_030251)	-285.0	NR_155424	80283.0	Mm.166858	NM_030251	ENSMUSG00000030083	Abtb1	AI847549|BC003234|BPOZ|EF1ABP	ankyrin repeat and BTB (POZ) domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-48043718-4	chr17	48043637	48043837	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6B|LTR|ERVK	-5444.0	NM_029689	76651.0	Mm.76918	NM_029689	ENSMUSG00000094928	1700122O11Rik	-	RIKEN cDNA 1700122O11 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-37014468-3	chr10	37014371	37014571	+	767.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39927.0	NM_008229	15182.0	Mm.19806	NM_008229	ENSMUSG00000019777	Hdac2	D10Wsu179e|YAF1|Yy1bp|mRPD3	histone deacetylase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-110464198-4	chr9	110464083	110464283	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360306, intron 1 of 9)	intron (NM_001360306, intron 1 of 9)	12511.0	NM_001360306	270201.0	Mm.41744	NM_177771	ENSMUSG00000054792	Klhl18	A930041K15|AW545966	kelch-like 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-100543902-4	chr15	100543774	100543974	+	960.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355497, intron 2 of 15)	IAPEY3-int|LTR|ERVK	8134.0	NM_033476	21422.0	Mm.219040	NM_033476	ENSMUSG00000009733	Tfcp2	CP-2|CP2|D230015P20Rik|LBP-1c|LBP-1d|LBP1|LSF|Tcfcp2|UBP-1	transcription factor CP2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-132521060-3	chr1	132521033	132521233	+	752.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177129, intron 16 of 22)	intron (NM_177129, intron 16 of 22)	14903.0	NM_029025	74626.0	Mm.34611	NM_029025	ENSMUSG00000048174	Tmem81	4930429O20Rik|AI465369	transmembrane protein 81	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-111663292-1	chr7	111663192	111663392	+	542.0	f0_balb.idr	intron (NM_001360903, intron 1 of 10)	intron (NM_001360903, intron 1 of 10)	116685.0	NM_001360903	233733.0	Mm.323322	NM_173739	ENSMUSG00000038296	Galnt18	2900011G21Rik|BC024988|Galntl4|galNAc-T18|mpp-GalNAc-T18(O18)	polypeptide N-acetylgalactosaminyltransferase 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-49819702-3	chr16	49819619	49819819	+	607.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD-int|LTR|ERVL-MaLR	-35935.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-142909603-2	chr5	142909514	142909714	+	1000.0	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-2860.0	NM_007393	11461.0	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-71866771-3	chr2	71866664	71866864	+	976.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_039557, intron 3 of 3).2	intron (NR_039557, intron 3 of 3).2	-6460.0	NM_172665	228026.0	Mm.34411	NM_172665	ENSMUSG00000006494	Pdk1	B830012B01|D530020C15Rik	pyruvate dehydrogenase kinase, isoenzyme 1	protein-coding	3.28895723045255	4.19452610478638	2.84229826282904	3.63776243078138	2.50791384692642	1.40604251060027	1.34800171370512	1.59555835578627	-3.29681156992613	9.99489042182602e-05	0.00309230891412003
Merged-chr6-100416207-4	chr6	100416110	100416310	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-111190.0	NR_040525	73395.0	Mm.69413	NR_040525	ENSMUSG00000101553	1700049E22Rik	-	RIKEN cDNA 1700049E22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70774027-2	chr8	70773927	70774127	+	608.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008841, intron 2 of 15)	intron (NM_008841, intron 2 of 15)	2685.0	NM_008841	18709.0	Mm.12945	NM_008841	ENSMUSG00000031834	Pik3r2	p85beta	phosphoinositide-3-kinase regulatory subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-132282215-4	chr2	132282100	132282300	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291040, intron 1 of 3)	intron (NM_001291040, intron 1 of 3)	-3739.0	NM_001291039	110911.0	Mm.284503	NM_138651	ENSMUSG00000058793	Cds2	5730450N06Rik|5730460C18Rik|AI854580|D2Wsu127e	CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-92253987-3	chr2	92253869	92254069	+	951.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109690, intron 3 of 15)	intron (NM_001109690, intron 3 of 15)	32407.0	NM_001109690	192285.0	Mm.330408	NM_138755	ENSMUSG00000058318	Phf21a	80kDa|Bhc|Bhc80|D030065N23Rik|PFTF1	PHD finger protein 21A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-105992649-3	chr1	105992550	105992750	+	850.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122675, intron 1 of 12)	intron (NM_001122675, intron 1 of 12)	2244.0	NM_001122675	227449.0	Mm.210188	NM_001122675	ENSMUSG00000038866	Zcchc2	9930114B20Rik|AW212015	zinc finger, CCHC domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-114741234-2	chr9	114741128	114741328	+	882.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026036, intron 3 of 3)	B1F|SINE|Alu	10025.0	NM_026036	67213.0	Mm.28858	NM_026036	ENSMUSG00000032434	Cmtm6	2810051A14Rik|AA536733|Cklfsf6	CKLF-like MARVEL transmembrane domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36836684-3	chr1	36836598	36836798	+	808.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018872, intron 8 of 40)	intron (NM_018872, intron 8 of 40)	57714.0	NM_001289612	22637.0	Mm.8038	NM_009539	ENSMUSG00000026117	Zap70	Srk|ZAP-70|mrtle|mur	zeta-chain (TCR) associated protein kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-53851544-4	chr1	53851469	53851669	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001883, intron 21 of 28)	intron (NM_001001883, intron 21 of 28)	2145.0	NR_106149	102465783.0		NR_106149	ENSMUSG00000098443	Mir7681	Gm27806|mmu-mir-7681	microRNA 7681	ncRNA	3.41596823648684	3.17843022719924	2.48344483890245	3.44904133912927	3.63230347288398	3.61061870790767	4.28265218098449	3.61445187494043	0.959121286321933	0.0840889344411035	0.444840844543369
Merged-chr9-101035369-1	chr9	101035269	101035469	+	828.0	f1_balb.idr	promoter-TSS (NM_025835)	promoter-TSS (NM_025835)	-485.0	NM_025835	66904.0	Mm.335385	NM_025835	ENSMUSG00000032527	Pccb	1300012P06Rik|AI314687|R74805	propionyl Coenzyme A carboxylase, beta polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-92371823-2	chr5	92371733	92371933	+	587.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310664, intron 2 of 10)	intron (NM_001310664, intron 2 of 10)	-8537.0	NR_038116	56066.0	Mm.131723	NM_019494	ENSMUSG00000060183	Cxcl11	Cxc11|H174|I-tac|Ip9|Itac|Scyb11|Scyb9b|b-R1|betaR1	chemokine (C-X-C motif) ligand 11	protein-coding	-0.344408187354326	-0.469437190159186	-0.472950708515428	-0.47565112065007	0.0656553786416733	-0.468643108923468	-0.47217707690158	-0.0637616604560014	2.56110037483376	0.322775125546743	1
Merged-chr4-138325760-4	chr4	138325696	138325896	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026880, intron 1 of 7)	CpG	500.0	NM_026880	68943.0	Mm.18539	NM_026880	ENSMUSG00000028756	Pink1	1190006F07Rik|AU042772|AW557854|BRPK|mFLJ00387	PTEN induced putative kinase 1	protein-coding	5.46809982899223	5.0048553364635	5.47014208107805	4.55203422649554	4.31627448468347	4.85946038679992	5.30962880231656	3.25045626877544	-0.668130248792869	0.121744357069635	0.547245267450283
Merged-chr4-155894426-4	chr4	155894328	155894528	+	998.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207223, intron 1 of 24)	intron (NM_207223, intron 1 of 24)	2553.0	NM_207223	140500.0	Mm.219591	NM_207223	ENSMUSG00000029033	Acap3	Centb5|Kiaa1716-hp|mKIAA1716	ArfGAP with coiled-coil, ankyrin repeat and PH domains 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-25592277-4	chr9	25592175	25592375	+	958.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 6 of 7)	intron (NM_026189, intron 6 of 7)	110678.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-100732799-4	chr15	100732695	100732895	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045781)	promoter-TSS (NR_045781)	-58.0	NR_045782	619313.0	Mm.123436	NR_045781	ENSMUSG00000116504	I730030J21Rik	-	RIKEN cDNA I730030J21 gene	ncRNA	2.28824743903565	2.58136915193205	3.42074940840596	2.9092276112457	3.48712364060542	2.8890591344218	2.51169322059122	3.70567160854126	0.639023789193316	0.351436320660547	0.851869250625437
Merged-chr9-35051082-2	chr9	35050982	35051182	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009178, intron 9 of 10)	intron (NM_009178, intron 9 of 10)	-65646.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-118244617-2	chr7	118244517	118244717	+	856.1666869999999	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001031814)	promoter-TSS (NM_001031814)	710.0	NR_027879	67745.0	Mm.483404	NM_183267	ENSMUSG00000055159	4930583K01Rik	-	RIKEN cDNA 4930583K01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-8862172-2	chr4	8862072	8862272	+	621.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355382, intron 33 of 36)	intron (NM_001355382, intron 33 of 36)	110848.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-58009335-2	chr11	58009235	58009435	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_028451, exon 1 of 19)	exon (NM_028451, exon 1 of 19)	271.0	NM_028451	73158.0	Mm.248843	NM_028451	ENSMUSG00000037331	Larp1	1810024J12Rik|3110040D16Rik|Larp|mKIAA0731	La ribonucleoprotein domain family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-9697617-2	chr1	9697517	9697717	+	804.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008651, intron 1 of 15)	intron (NM_008651, intron 1 of 15)	2592.0	NM_001290397	17864.0	Mm.479	NM_008651	ENSMUSG00000025912	Mybl1	A-myb|G1-419-6|repro9	myeloblastosis oncogene-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-47220420-1	chr19	47220320	47220520	+	1000.0	f0_c57.idr	intron (NM_021360, intron 1 of 5)	(CACAT)n|Simple_repeat|Simple_repeat	-8423.0	NM_001163480	18011.0	Mm.313651	NM_021360	ENSMUSG00000006435	Neurl1a	2410129E16Rik|AI450910|AI481072|Neu1|Neur1|Neurl|Neurl1|Nlz|Rnf67	neuralized E3 ubiquitin protein ligase 1A	protein-coding	-0.0497262828871095	-0.106796051776844	0.349975222748196	-0.300589715987058	-0.304995978153499	-0.292480160987169	-0.296567197916018	-0.139714245590678	-2.70795147247117	0.241689939268681	1
Merged-chr1-172552925-3	chr1	172552812	172553012	+	859.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-2106.0	NR_040558	71319.0	Mm.123774	NR_040558	ENSMUSG00000085184	4933439K11Rik	-	RIKEN cDNA 4933439K11 gene	ncRNA	0.612663624445232	0.610361172735584	0.816725384063493	0.872513326254447	0.239871956616066	0.259639158260925	0.253206926045837	0.247718088954005	-4.20430111959245	0.0263506320565414	1
Merged-chr5-142815500-4	chr5	142815395	142815595	+	829.145874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178242, intron 1 of 15)	CpG-11746	1892.0	NM_178242	231861.0	Mm.354649	NM_178242	ENSMUSG00000039477	Tnrc18	BC025631|EG381742|Zfp469	trinucleotide repeat containing 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-12427147-2	chr19	12427050	12427250	+	661.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019540)	promoter-TSS (NM_019540)	-755.0	NM_019540	56093.0	Mm.285849	NM_019540	ENSMUSG00000040065	Pfpl	Epcs5|Epcs50	pore forming protein-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-88046746-2	chr11	88046657	88046857	+	895.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173374)	promoter-TSS (NM_173374)	-616.0	NM_001078167	110809.0	Mm.391719	NM_173374	ENSMUSG00000018379	Srsf1	1110054N12Rik|5730507C05Rik|6330415C05Rik|AI482334|AW491331|Asf|Sf2|Sfrs1	serine/arginine-rich splicing factor 1	protein-coding	1.5990800598656	1.83642184289005	1.41526388427833	0.891907322487327	2.22562658964601	0.951169817402418	0.922095659992765	3.01072107710817	1.52923103736168	0.220660503925653	0.711835678575402
Merged-chr14-62808835-4	chr14	62808737	62808937	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045503, intron 2 of 6)	LTR16A|LTR|ERVL	-28853.0	NM_175546	268752.0	Mm.1960	NM_175546	ENSMUSG00000014547	Wdfy2	5830485M08|B130024L21Rik|ProF|ZFYVE22	WD repeat and FYVE domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-69968561-2	chr8	69968482	69968682	+	571.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286450, intron 1 of 12)	MT2B|LTR|ERVL	5801.0	NM_001113346	234366.0	Mm.270044	NM_145596	ENSMUSG00000036180	Gatad2a	1110066C11Rik|BC031407|C80248	GATA zinc finger domain containing 2A	protein-coding	-1.18378942727406	-1.15669478905697	-0.457913181653105	-1.17806440097404	-1.18323730008524	-1.15415234459186	-1.16577117532349	-1.17633933179771	-2.81844548480871	0.412768592413622	1
Merged-chr8-120752113-1	chr8	120752013	120752213	+	613.0	f0_balb.idr	intron (NM_001301811, intron 6 of 8)	intron (NM_001301811, intron 6 of 8)	13474.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-32146429-4	chr9	32146345	32146545	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195632, intron 2 of 21)	intron (NM_001195632, intron 2 of 21)	30309.0	NM_001195632	330914.0	Mm.46683	NM_177379	ENSMUSG00000041444	Arhgap32	3426406O18Rik|Gc-gap|Grit|Px-rics|Rics|mKIAA0712|p200Rhogap|p250Gap	Rho GTPase activating protein 32	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-127398299-2	chr6	127398199	127398399	+	671.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-48541.0	NM_001346513	101187.0	Mm.110818	NM_181402	ENSMUSG00000037997	Parp11	5330431N24Rik|AI851877|ARTD11|HIN1L|PARP-11	poly (ADP-ribose) polymerase family, member 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-44858893-4	chr10	44858788	44858988	+	970.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-208326.0	NM_011156	19072.0	Mm.10281	NM_011156	ENSMUSG00000019849	Prep	AI047692|AI450383|D10Wsu136e|PEP|Pop	prolyl endopeptidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-84100373-3	chr12	84100320	84100520	+	653.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172580)	promoter-TSS (NM_172580)	-234.0	NM_172580	217700.0	Mm.49245	NM_172580	ENSMUSG00000043487	Acot6	4632408A20Rik|A330054B07|BE688602	acyl-CoA thioesterase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-36715569-2	chr16	36715469	36715669	+	824.333313	f1_balb.idr|f1_c57bl6.idr	exon (NM_001285791, exon 4 of 7)	exon (NM_001285791, exon 4 of 7)	21591.0	NM_001285791	106347.0	Mm.17807	NM_134109	ENSMUSG00000022900	Ildr1	AU041483|AU044638	immunoglobulin-like domain containing receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124813194-2	chr6	124813094	124813294	+	801.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009415, intron 1 of 6)	intron (NM_009415, intron 1 of 6)	1102.0	NM_009415	21991.0	Mm.4222	NM_009415	ENSMUSG00000023456	Tpi1	AI255506|TIM|Tpi|Tpi-1	triosephosphate isomerase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-88304650-4	chr7	88304548	88304748	+	958.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009982, intron 5 of 6)	intron (NM_009982, intron 5 of 6)	26563.0	NM_001311790	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-105688259-2	chr3	105688159	105688359	+	986.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017397)	promoter-TSS (NM_017397)	-688.0	NM_017397	53975.0	Mm.272826	NM_017397	ENSMUSG00000027905	Ddx20	GEMIN3|dp103	DEAD (Asp-Glu-Ala-Asp) box polypeptide 20	protein-coding	1.32486613901541	2.01676291197639	0.636257395348721	0.624162340135406	1.33921660139749	0.654969909287139	0.639669165122643	1.31072723945231	-0.951815912485628	0.545415168240416	0.95633639739115
Merged-chr13-10599423-5	chr13	10599321	10599521	+	891.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-238618.0	NM_033269	12671.0	Mm.342315	NM_033269	ENSMUSG00000046159	Chrm3	Chrm-3|M3|M3R	cholinergic receptor, muscarinic 3, cardiac	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-71315521-4	chr2	71315432	71315632	+	979.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172436, intron 5 of 17)	intron (NM_172436, intron 5 of 17)	52022.0	NM_172436	78830.0	Mm.30928	NM_172436	ENSMUSG00000027010	Slc25a12	2610002D09Rik|AI839531|B230107K20Rik|BB129864	solute carrier family 25 (mitochondrial carrier, Aralar), member 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-77214455-3	chr11	77214362	77214562	+	876.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-1963.0	NM_177710	237860.0	Mm.440381	NM_177710	ENSMUSG00000037926	Ssh2	SSH-2|SSH-2L|mSSH-2L	slingshot protein phosphatase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-49832602-4	chr18	49832516	49832716	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081371)	promoter-TSS (NM_001081371)	-381.0	NM_001081371	240283.0	Mm.257790	NM_001081371	ENSMUSG00000037416	Dmxl1	C630007L23Rik|D030030C22	Dmx-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122889680-3	chr8	122889559	122889759	+	701.083313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_037865, exon 10 of 14)	non-coding (NR_037865, exon 10 of 14)	41285.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	0.948112736013036	0.402096718617515	0.394729031568562	0.38903443505351	0.869847052644586	0.403755563759862	0.864761353027088	1.03362509623936	1.45624456670082	0.428145612731608	1
Merged-chr4-57958406-4	chr4	57958290	57958490	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1979.0	NM_011660	22166.0	Mm.260618	NM_011660	ENSMUSG00000028367	Txn1	ADF|AW550880|Trx1|Txn	thioredoxin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-34570207-4	chr19	34570109	34570309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355262, intron 1 of 2)	intron (NM_001355262, intron 1 of 2)	-13320.0	NM_010501	15959.0	Mm.426079	NM_010501	ENSMUSG00000074896	Ifit3	Ifi49|P49	interferon-induced protein with tetratricopeptide repeats 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-72564487-3	chr11	72564372	72564572	+	883.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14226.0	NM_029932	77577.0	Mm.46185	NM_029932	ENSMUSG00000020798	Spns3	9830002I17Rik	spinster homolog 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-50751201-3	chr15	50751124	50751324	+	942.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310481, intron 4 of 5)	intron (NM_001310481, intron 4 of 5)	137825.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	0.22134341816936	-0.403832273189386	-0.407905882891036	-0.41104594954308	0.15289028591124	-0.4029134475882	-0.407007776290711	-0.410497564987378	-0.215110299648127	0.937061601467472	1
Merged-chr9-19617579-2	chr9	19617479	19617679	+	769.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	-4512.0	NM_172918	244713.0	Mm.67366	NM_172918	ENSMUSG00000057551	Zfp317	4932416G03|D230022C05Rik|KRAB9|Zfp67|Zfp75|mszf40	zinc finger protein 317	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67646219-2	chr10	67646119	67646319	+	993.400024	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74260.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53063925-2	chr4	53063825	53064025	+	696.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 30 of 49)	intron (NM_013454, intron 30 of 49)	52045.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-61595759-4	chr3	61595662	61595862	+	928.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	231255.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-49818766-4	chr16	49818675	49818875	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-36879.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167798129-4	chr2	167798021	167798221	+	884.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	106944.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-37208312-4	chr19	37208238	37208438	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290828)	promoter-TSS (NM_001290828)	793.0	NM_001164336	69104.0	Mm.175989	NM_027314	ENSMUSG00000023307	March5	1810015H18Rik|2310008I22Rik|2700055A20Rik|5730499H23Rik|E130202O05Rik|MARCH-V|MITOL|Marchv|Rnf153	membrane-associated ring finger (C3HC4) 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-104253180-3	chr8	104253092	104253292	+	778.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037841, intron 1 of 2)	B3A|SINE|B2	2331.0	NM_001286383	75458.0	Mm.269219	NM_029295	ENSMUSG00000054400	Cklf	1700001C14Rik|1810018M11Rik|A730028G07Rik|C32|CKLF1|CKLF3|CKLF4|CKLF5|Cklf2|Cklf6|HSPC224|UCK-1	chemokine-like factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32784503-4	chr2	32784424	32784624	+	947.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025619)	promoter-TSS (NM_025619)	-119.0	NM_025619	227736.0	Mm.441499	NM_025619	ENSMUSG00000038987	Cfap157	1700019L03Rik	cilia and flagella associated protein 157	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-53888869-4	chr10	53888701	53888901	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-137892.0	NM_001081428	75906.0	Mm.436785	NM_001081428	ENSMUSG00000019856	Fam184a	3110012E06Rik|4930438C08Rik|4930589M24Rik	family with sequence similarity 184, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167961236-4	chr2	167961158	167961358	+	854.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011201, intron 1 of 8)	intron (NM_011201, intron 1 of 8)	28931.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-95694132-4	chr12	95694013	95694213	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201518, intron 1 of 1)	intron (NM_201518, intron 1 of 1)	1887.0	NM_201518	399558.0	Mm.341948	NM_201518	ENSMUSG00000047414	Flrt2	-	fibronectin leucine rich transmembrane protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-52924518-4	chr2	52924410	52924610	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	66642.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-6364231-2	chr7	6364131	6364331	+	747.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177888, intron 1 of 4)	ORR1C1-int|LTR|ERVL-MaLR	923.0	NM_001112805	330463.0	Mm.136456	NM_177888	ENSMUSG00000055150	Zfp78	A330079D15|KRAB12|Zfp77	zinc finger protein 78	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72831542-2	chr6	72831439	72831639	+	708.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42494.0	NM_009332	21415.0	Mm.440067	NM_009332	ENSMUSG00000055799	Tcf7l1	Tcf-3|Tcf3|bHLHb21	transcription factor 7 like 1 (T cell specific, HMG box)	protein-coding	1.01974519170505	0.491439310947229	0.691706743732923	0.669371314510991	0.787399786910416	0.49397012906193	0.698020876575357	1.76848761078269	1.43394326768047	0.354203771782636	0.853132398390271
Merged-chr13-49199895-7	chr13	49199779	49199979	+	837.028564	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12332.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-25273496-4	chr17	25273405	25273605	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027452)	promoter-TSS (NR_027452)	-74.0	NM_001177610	22196.0	Mm.240044	NM_011665	ENSMUSG00000015120	Ube2i	5830467E05Rik|UBC9|Ubce2i|Ubce9	ubiquitin-conjugating enzyme E2I	protein-coding	6.88152659169042	6.24281191620211	6.676553176722	6.19247843487665	7.30079921878189	6.30001041645283	6.74166229040307	6.42183058805445	0.236759367248082	0.338782795597659	0.839239363024236
Merged-chr12-10589871-4	chr12	10589771	10589971	+	851.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	143483.0	NR_110487	328061.0	Mm.56067	NR_110487	ENSMUSG00000112792	Gm38407	4931412M21	predicted gene, 38407	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46527478-2	chr19	46527418	46527618	+	642.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	25870.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	2.84125108516583	2.23533351509293	2.00766287103426	2.79134751062859	2.24291851607507	1.6830574119699	2.73197194602933	1.5900201069813	-0.816093601442846	0.359581436200226	0.856306289008338
Merged-chr14-65833312-2	chr14	65833212	65833412	+	945.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028039, intron 1 of 10)	intron (NM_028039, intron 1 of 10)	657.0	NM_028039	71988.0	Mm.249280	NM_028039	ENSMUSG00000022034	Esco2	2410004I17Rik|D030072L07Rik	establishment of sister chromatid cohesion N-acetyltransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-8681350-2	chr5	8681250	8681450	+	723.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011076, intron 6 of 29)	Lx8|LINE|L1	-58398.0	NM_198620	242819.0	Mm.332192	NM_198620	ENSMUSG00000040570	Rundc3b	Gm440	RUN domain containing 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-53091030-3	chr18	53090941	53091141	+	900.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-85251.0	NM_001357463	67804.0	Mm.252171	NM_026386	ENSMUSG00000034484	Snx2	0610030A03Rik	sorting nexin 2	protein-coding	1.35388520434441	1.69822580960599	0.621648669547004	2.17556854110873	0.974025541707716	0.643252676408565	0.625601029319667	0.610070914195788	-3.67144169674598	0.0229711998459233	0.197333023211017
Merged-chr9-32652438-4	chr9	32652347	32652547	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-43595.0	NM_011808	23871.0	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-119985051-2	chr9	119984951	119985151	+	844.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153287)	promoter-TSS (NM_153287)	-309.0	NM_153287	215418.0	Mm.491094	NM_153287	ENSMUSG00000032515	Csrnp1	4931429D10Rik|Axud1|CSRNP-1|URAX1|taip-3	cysteine-serine-rich nuclear protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-96118171-2	chr9	96118071	96118271	+	733.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-1258.0	NM_177352	235533.0	Mm.213651	NM_177352	ENSMUSG00000041440	Gk5	AV095337|C330018K18Rik|G630067D24Rik	glycerol kinase 5 (putative)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44858103-4	chr7	44858012	44858212	+	965.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290764, intron 2 of 16)	intron (NM_001290764, intron 2 of 16)	709.0	NM_001290767	59047.0	Mm.238254	NM_021549	ENSMUSG00000002963	Pnkp	1810009G08Rik|PNK	polynucleotide kinase 3'- phosphatase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-148168532-4	chr4	148168421	148168621	+	957.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7853.0	NM_176848	230904.0	Mm.262287	NM_176848	ENSMUSG00000041556	Fbxo2	FBG1|FBX2|Fbs1|Fbs2|NFB42|Prpl4	F-box protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-134540726-1	chr4	134540626	134540826	+	686.0	f1_balb.idr	exon (NM_029100, exon 11 of 12)	exon (NM_029100, exon 11 of 12)	-5339.0	NM_029759	76824.0	Mm.30153	NM_029759	ENSMUSG00000046671	Mtfr1l	2410166I05Rik|AI480750|Fam54b	mitochondrial fission regulator 1-like	protein-coding	1.3438868066734	0.550418762528218	0.538984610139623	1.60227679399206	1.08240005231134	0.96905922121608	0.54152215953202	0.531606967395121	-1.30686613036103	0.43795030257692	0.908612234382228
Merged-chr17-24488345-2	chr17	24488245	24488445	+	890.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027937)	promoter-TSS (NM_027937)	-438.0	NM_001360469	268932.0	Mm.70989	NM_027937	ENSMUSG00000033597	Caskin1	3300002N10Rik|C130061I24|C630036E02Rik|mKIAA1306	CASK interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-86679049-3	chr14	86678957	86679157	+	735.866638	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019670, intron 27 of 27)	B4|SINE|B4	433087.0	NR_040457	75155.0	Mm.399239	NR_040457	ENSMUSG00000115271	4930529K09Rik	4930507G21Rik	RIKEN cDNA 4930529K09 gene	ncRNA	2.38152416799396	2.53758684521563	2.95584857008757	2.87052287763297	2.63946815651272	4.05298001789859	3.25711639561461	2.38728594555819	0.950047477842715	0.181910720224426	0.655513168938505
Merged-chr11-6484570-6	chr11	6484485	6484685	+	874.5361330000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8509.0	NM_011221	19291.0	Mm.296150	NM_011221	ENSMUSG00000094483	Purb	2310015K15Rik|AA114818|Cager-2|D11Bwg0414e	purine rich element binding protein B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-144554075-2	chr2	144553975	144554175	+	563.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2154.0	NM_001252544	27054.0	Mm.248492	NM_019787	ENSMUSG00000027429	Sec23b	-	SEC23 homolog B, COPII coat complex component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-109060150-1	chr4	109060050	109060250	+	808.0	f1_c57bl6.idr	TTS (NM_001355191)	TTS (NM_001355191)	42495.0	NR_030432	791075.0		NR_030432	ENSMUSG00000076444	Mir761	Mirn761|mir-761|mmu-mir-761	microRNA 761	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-17019377-2	chr11	17019277	17019477	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10659.0	NM_019549	56193.0	Mm.98232	NM_019549	ENSMUSG00000020120	Plek	2010300B13Rik	pleckstrin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126181317-2	chr7	126181217	126181417	+	590.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_028816, intron 1 of 23)	intron (NM_028816, intron 1 of 23)	19184.0	NM_001311143	74204.0	Mm.235663	NM_028816	ENSMUSG00000000131	Xpo6	2610005L19Rik|AL022631|C230091E20Rik|R75304|Ranbp20|exp6|mKIAA0370	exportin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-32588169-4	chr6	32588056	32588256	+	954.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175750)	promoter-TSS (NM_175750)	36.0	NM_175750	243743.0	Mm.444029	NM_175750	ENSMUSG00000029765	Plxna4	9330117B14|Plxa4|mKIAA1550	plexin A4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19744769-4	chr7	19744668	19744868	+	768.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008990, intron 1 of 8)	intron (NM_008990, intron 1 of 8)	4805.0	NM_008990	19294.0	Mm.4341	NM_008990	ENSMUSG00000062300	Nectin2	AI325026|AI987993|Cd112|MPH|Pvr|Pvrl2|Pvs|nectin-2	nectin cell adhesion molecule 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-8451240-4	chr15	8451142	8451342	+	987.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6779.0	NM_201232	71175.0	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	NIPBL cohesin loading factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-134932291-4	chr5	134932199	134932399	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024479)	promoter-TSS (NM_024479)	-74.0	NM_001359536	79565.0	Mm.34235	NM_024479	ENSMUSG00000040557	Mettl27	AW492986|BC002286|Wbscr27	methyltransferase like 27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-98787114-3	chr7	98787022	98787222	+	813.027771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER63A|DNA|hAT-Blackjack	-47990.0	NM_001285794	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-130078294-4	chr5	130078195	130078395	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013837, intron 1 of 5)	intron (NM_013837, intron 1 of 5)	-1075.0	NM_001130476	22021.0	Mm.332720	NM_013837	ENSMUSG00000034118	Tpst1	R75054|Tango13a	protein-tyrosine sulfotransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31009064-1	chr14	31008964	31009164	+	1000.0	f1_balb.idr	intron (NM_001165930, intron 4 of 9)	Charlie10b|DNA|hAT-Charlie	5287.0	NR_028531	100217431.0		NR_028531		Snord69	MBII-210	small nucleolar RNA, C/D box 69	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-59562697-4	chr13	59562569	59562769	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5322.0	NM_023328	67269.0	Mm.153008	NM_023328	ENSMUSG00000021557	Agtpbp1	1700020N17Rik|2310001G17Rik|2900054O13Rik|4930445M19Rik|5730402G09Rik|CCP1|Nna1|nmf243|pcd	ATP/GTP binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26885169-4	chr17	26885064	26885264	+	951.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31927.0	NM_053173	16580.0	Mm.491138	NM_016761	ENSMUSG00000024301	Kifc5b	Hset|KNSL2|Kifc5a	kinesin family member C5B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27754248-2	chr2	27754148	27754348	+	602.833374	f1_balb.idr|f1_c57bl6.idr	exon (NM_011305, exon 7 of 10)	exon (NM_011305, exon 7 of 10)	43665.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-126611629-3	chr3	126611483	126611683	+	848.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025438, intron 2 of 18)	intron (NM_001025438, intron 2 of 18)	14632.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	2.4175207993497	1.08237069255311	1.06085082844987	1.59750887616027	1.95841683358592	1.86384945623965	1.49387759147933	1.86046632163427	0.297256692662977	0.800511994223477	0.998431161219273
Merged-chr14-46704363-1	chr14	46704263	46704463	+	729.5	f0_balb.idr	Intergenic	Intergenic	-30588.0	NR_131909	328385.0	Mm.271545	NR_131909	ENSMUSG00000115015	D330046F09Rik	Gm808	RIKEN cDNA D330046F09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-34006509-2	chr18	34006409	34006609	+	924.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013512, intron 1 of 23)	CpG-6813	697.0	NM_013512	13824.0	Mm.3465	NM_013512	ENSMUSG00000024376	Epb41l4a	Epb4.1l4|Epb4.1l4a|NBL4	erythrocyte membrane protein band 4.1 like 4a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128817962-4	chr2	128817897	128818097	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028248)	promoter-TSS (NM_028248)	-306.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-45063320-2	chr2	45063220	45063420	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355291, intron 2 of 9)	intron (NM_001355291, intron 2 of 9)	-40143.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-102249572-4	chr7	102249485	102249685	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019566, intron 1 of 1)	intron (NM_019566, intron 1 of 1)	533.0	NM_019566	56212.0	Mm.259795	NM_019566	ENSMUSG00000073982	Rhog	2810426G09Rik|Arhg|Sid10750	ras homolog family member G	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101599485-3	chr7	101599388	101599588	+	573.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	HAL1ME|LINE|L1	-18327.0	NM_019915	11872.0	Mm.57008	NM_019915	ENSMUSG00000030651	Art2b	ART2.2|ARTC2|Art|Ly92b|Rt-6|Rt6|Rt6-2	ADP-ribosyltransferase 2b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83302172-2	chr11	83302072	83302272	+	975.0833130000001	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001035854)	promoter-TSS (NM_001035854)	-525.0	NM_027915	71770.0	Mm.39053	NM_027915	ENSMUSG00000035152	Ap2b1	1300012O03Rik|AI788979|AP105B	adaptor-related protein complex 2, beta 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-102284319-2	chr11	102284219	102284419	+	679.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302506)	promoter-TSS (NM_001302506)	-501.0	NM_001302506	72053.0	Mm.101274	NM_028076	ENSMUSG00000034757	Tmub2	2010008E23Rik	transmembrane and ubiquitin-like domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153123421-2	chr2	153123321	153123521	+	607.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001172117, intron 1 of 12)	intron (NM_001172117, intron 1 of 12)	14953.0	NM_010407	15162.0	Mm.715	NM_010407	ENSMUSG00000003283	Hck	AI849071|Bmk	hemopoietic cell kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-37956805-4	chr3	37956703	37956903	+	886.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040559, intron 2 of 3)	intron (NR_040559, intron 2 of 3)	57990.0	NR_040559	626410.0	Mm.389417	NR_040559	ENSMUSG00000106461	Gm20755	-	predicted gene, 20755	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-29837398-2	chr16	29837298	29837498	+	598.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	141726.0	NR_037689	328657.0	Mm.425982	NM_001033403		Gm1968	-	predicted gene 1968	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124727374-2	chr6	124727274	124727474	+	862.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077705, intron 9 of 15)	intron (NM_001077705, intron 9 of 15)	5780.0	NM_013545	15170.0	Mm.271799	NM_013545	ENSMUSG00000004266	Ptpn6	70Z-SHP|Hcph|PTPTY-42|Ptp1C|SH-PTP1|SHP-1|hcp|me	protein tyrosine phosphatase, non-receptor type 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-139008039-2	chr1	139007939	139008139	+	754.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_181347, intron 1 of 20)	intron (NM_181347, intron 1 of 20)	30382.0	NR_108103	78229.0	Mm.437838	NR_108103	ENSMUSG00000104900	4930596I21Rik	-	RIKEN cDNA 4930596I21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-78538765-4	chr9	78538616	78538816	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172773, intron 10 of 10)	intron (NM_172773, intron 10 of 10)	49329.0	NM_172773	235504.0	Mm.46932	NM_172773	ENSMUSG00000049624	Slc17a5	4631416G20Rik|4732491M05|AST|ISSD|NSD|SD|SIALIN|SIASD|SLD	solute carrier family 17 (anion/sugar transporter), member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76899257-2	chr15	76899153	76899353	+	569.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025536)	promoter-TSS (NM_025536)	-688.0	NM_025536	66398.0	Mm.291716	NM_025536	ENSMUSG00000055041	Commd5	2310065H03Rik|AI854466|D15Ertd81e|Hcarg	COMM domain containing 5	protein-coding	-0.739922845876002	-0.724377108959114	-0.729313124984824	-0.733222914651626	-0.738908910578868	-0.723284083365589	-0.728211965412941	0.286820059152057	4.22819200116164	0.0972886568409455	1
Merged-chr9-24499710-4	chr9	24499607	24499807	+	968.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359948, intron 1 of 22)	MTE2a|LTR|ERVL-MaLR	3433.0	NM_001359948	244745.0	Mm.38526	NM_172920	ENSMUSG00000043067	Dpy19l1	1100001I19Rik|6030402K12|AI225861|AW558481	dpy-19-like 1 (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-98951668-5	chr10	98951553	98951753	+	852.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359507, intron 1 of 21)	intron (NM_001359507, intron 1 of 21)	36501.0	NM_026482	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-124121520-4	chr9	124121404	124121604	+	986.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009917)	promoter-TSS (NM_009917)	-39.0	NM_009917	12774.0	Mm.14302	NM_009917	ENSMUSG00000079227	Ccr5	AM4-7|CD195|Cmkbr5	chemokine (C-C motif) receptor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-109199609-4	chr4	109199519	109199719	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346502, intron 1 of 23)	intron (NM_001346502, intron 1 of 23)	2653.0	NM_133885	100273.0	Mm.366315	NM_133885	ENSMUSG00000028559	Osbpl9	2600011I06Rik|AU015843|Orp-9	oxysterol binding protein-like 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-84684342-5	chr18	84684325	84684525	+	904.6333619999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023149, intron 1 of 11)	intron (NM_023149, intron 1 of 11)	1277.0	NM_023149	66054.0	Mm.29646	NM_023149	ENSMUSG00000024644	Cndp2	0610010E05Rik|C76600|Cn2|Dip-2|Pep-1|Pep1	CNDP dipeptidase 2 (metallopeptidase M20 family)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19310239-5	chr7	19310080	19310280	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008036)	promoter-TSS (NM_008036)	-135.0	NM_001347586	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-54644546-3	chr6	54644433	54644633	+	852.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001164361, exon 14 of 14)	3' UTR (NM_001164361, exon 14 of 14)	-37091.0	NM_001289741	68235.0	Mm.233860	NM_026629	ENSMUSG00000038065	Mturn	2410066E13Rik|AI448550|B230212L03Rik	maturin, neural progenitor differentiation regulator homolog (Xenopus)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-66128846-4	chr17	66128716	66128916	+	883.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003919, intron 2 of 26)	intron (NM_001003919, intron 2 of 26)	5296.0	NM_001348292	320209.0	Mm.259605	NM_001003919	ENSMUSG00000035842	Ddx11	4732462I11Rik|CHL1|CHLR1|KRG2|essa15a	DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-107692447-2	chr13	107692347	107692547	+	768.583374	f1_balb.idr|f1_c57bl6.idr	TTS (NR_045900)	TTS (NR_045900)	5050.0	NR_045900	72257.0	Mm.234155	NR_045900	ENSMUSG00000102000	1700006H21Rik	-	RIKEN cDNA 1700006H21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129582447-2	chr4	129582359	129582559	+	579.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-3879.0	NM_182783	230766.0	Mm.20377	NM_182783	ENSMUSG00000050493	Fam167b	SEC	family with sequence similarity 167, member B	protein-coding	1.32756655944202	2.20481611015349	2.22781659406901	1.96157701747871	1.50022399324155	1.45800218285986	2.03487214971547	1.97172411211198	-0.593534431498493	0.561524432356069	0.960362415684079
Merged-chr1-93411116-3	chr1	93410943	93411143	+	884.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357556, intron 24 of 27)	intron (NM_001357556, intron 24 of 27)	34658.0	NM_001301364	110611.0	Mm.30012	NM_133808	ENSMUSG00000034088	Hdlbp	1110005P14Rik|AA960365|AI118566|D1Ertd101e	high density lipoprotein (HDL) binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-33637901-8	chr17	33637863	33638063	+	876.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028279)	promoter-TSS (NR_028279)	-93.0	NM_001002842	378460.0	Mm.272606	NM_001002842	ENSMUSG00000032739	Pram1	AY665714	PML-RAR alpha-regulated adaptor molecule 1	protein-coding	1.66175650800551	2.6088152611134	1.31811830027987	2.71720116313566	1.67552060562881	2.83057088446828	2.90064985269484	2.22716764616237	0.595144958169653	0.529858134818448	0.949975777279101
Merged-chr13-42576107-6	chr13	42575937	42576137	+	983.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-104762.0	NM_001302635	218194.0	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-51527984-6	chr10	51527868	51528068	+	959.513916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16-int|LTR|ERVK	37070.0	NM_013532	14728.0	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-87986393-4	chr11	87986309	87986509	+	735.087524	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001168472, exon 1 of 3)	5' UTR (NM_001168472, exon 1 of 3)	176.0	NM_001168472	68097.0	Mm.246436	NM_026556	ENSMUSG00000020483	Dynll2	1700064A15Rik|6720463E02Rik|C87222|DLC8|DLC8b|Dlc2	dynein light chain LC8-type 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-45054501-3	chr2	45054470	45054670	+	777.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355291, intron 2 of 9)	intron (NM_001355291, intron 2 of 9)	-31393.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-40744835-2	chr19	40744734	40744934	+	957.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	85064.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	1.35633119747639	1.95500660565451	1.88429700267519	2.02978610174316	1.00312030185852	2.08628802089797	1.04835956270335	1.71891988945936	-0.823945091399202	0.487301385178036	0.932875548244773
Merged-chr9-108995431-4	chr9	108995331	108995531	+	939.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153430, intron 1 of 13)	intron (NR_153430, intron 1 of 13)	3529.0	NR_153430	270198.0	Mm.132391	NM_173019	ENSMUSG00000025648	Pfkfb4	C230090D14	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-49127768-2	chr2	49127668	49127868	+	677.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029924, intron 5 of 16)	intron (NM_029924, intron 5 of 16)	-118132.0	NM_001290656	109241.0	Mm.440436	NM_029924	ENSMUSG00000036792	Mbd5	9430004D19Rik|AA536666|AI426407|C030040A15Rik|Gm1630	methyl-CpG binding domain protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-129301691-4	chr7	129301585	129301785	+	826.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080963, intron 1 of 6)	intron (NM_001080963, intron 1 of 6)	44591.0	NM_001080963	381925.0	Mm.39184	NM_001080963	ENSMUSG00000070366	Plpp4	C030048B12Rik|Gm1090|Ppapdc1a	phospholipid phosphatase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-44988798-4	chr16	44988681	44988881	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	45103.0	NM_001128132	74603.0	Mm.297337	NM_027578	ENSMUSG00000036172	Cd200r3	4733401I18Rik|4833409J19Rik|AI505817|BB106877|mCD200RLb	CD200 receptor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-5824196-4	chr10	5824129	5824329	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175374)	promoter-TSS (NM_175374)	-286.0	NM_175374	108853.0	Mm.55082	NM_175374	ENSMUSG00000019774	Mtrf1l	9130004K12Rik	mitochondrial translational release factor 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-11290597-2	chr2	11290497	11290697	+	917.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008859, intron 16 of 17)	CpG-7733	-48892.0	NR_040369	100503147.0	Mm.91961	NR_040369	ENSMUSG00000086006	Gm13293	-	predicted gene 13293	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-102065858-4	chr15	102065763	102065963	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7910.0	NM_145625	75705.0	Mm.290022	NM_145625	ENSMUSG00000058655	Eif4b	2310046H11Rik|AL024095|C85189|Eif4a2	eukaryotic translation initiation factor 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-151595082-4	chr1	151594977	151595177	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022018, intron 1 of 13)	intron (NM_022018, intron 1 of 13)	23704.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-17783040-1	chr12	17782940	17783140	+	599.0	f0_balb.idr	intron (NM_001361645, intron 2 of 4)	intron (NM_001361645, intron 2 of 4)	92231.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	1.86135091005411	1.24952985193155	2.49389536246223	2.66770396065055	1.15082044709003	2.502287771748	1.70554092647917	2.68200984465857	-0.0620419193719558	0.95365094581099	0.998431161219273
Merged-chr10-8000150-3	chr10	8000068	8000268	+	893.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-44045.0	NM_138667	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-79723578-1	chr15	79723478	79723678	+	552.0	f1_c57bl6.idr	TTS (NM_001205345)	TTS (NM_001205345)	18958.0	NM_194342	223697.0	Mm.202715	NM_194342	ENSMUSG00000042524	Sun2	B230369L08Rik|C030011B15|Unc84b	Sad1 and UNC84 domain containing 2	protein-coding	1.49678478205936	1.1826991302413	2.0916169580575	2.51617142746218	1.67016769479912	1.46852974949691	1.97294494375135	2.97806150269157	0.58115993634474	0.58203055484021	0.966599221005409
Merged-chr1-36071384-4	chr1	36071281	36071481	+	902.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015818, intron 1 of 1)	intron (NM_015818, intron 1 of 1)	2981.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-98819567-2	chr7	98819467	98819667	+	722.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15545.0	NM_001285794	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-145302447-5	chr6	145302385	145302585	+	995.080017	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	51933.0	NR_045598	100039495.0	Mm.121014	NR_045598	ENSMUSG00000086013	Gm15706	-	predicted gene 15706	ncRNA	0.0653931565745859	0.848532114759077	0.26949220219373	0.251182635934905	0.0666923086276339	0.0875312768678806	0.802936798483468	0.0750080383367891	-0.546605042740097	0.788740125208415	1
Merged-chr16-84703355-4	chr16	84703241	84703441	+	837.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-9682.0	NR_132106	100653389.0	Mm.261808	NR_132106	ENSMUSG00000097418	Mir155hg	Bic|Gm26667	Mir155 host gene (non-protein coding)	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-19414718-2	chr2	19414618	19414818	+	789.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30945.0	NM_018809	19213.0	Mm.69647	NM_018809	ENSMUSG00000026735	Ptf1a	PTF1-p48|PTF1p48|bHLHa29	pancreas specific transcription factor, 1a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-12146946-2	chr13	12146846	12147046	+	658.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC|LINE|L1	39542.0	NR_045170	328186.0	Mm.188154	NM_183202		Gm10336	B330003H21	predicted gene 10336	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-182380834-4	chr1	182380727	182380927	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28340.0	NM_173378	209456.0	Mm.287450	NM_173378	ENSMUSG00000026510	Trp53bp2	53BP2|AI746547|ASPP2|PPP1R13A|Tp53bp2|X98550	transformation related protein 53 binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-102462077-3	chr15	102461970	102462170	+	619.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025385, intron 4 of 4)	intron (NM_025385, intron 4 of 4)	2900.0	NM_025385	66151.0	Mm.393955	NM_025385	ENSMUSG00000023048	Prr13	1110020C13Rik|2010324E22Rik	proline rich 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-23894446-4	chr18	23894329	23894529	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001162942)	TTS (NM_001162942)	-60259.0	NM_027007	69256.0	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-102665194-1	chr4	102665094	102665294	+	562.0	f0_balb.idr	Intergenic	Intergenic	75351.0	NM_001177981	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-61450902-2	chr10	61450802	61451002	+	976.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010124, intron 1 of 2)	intron (NM_010124, intron 1 of 2)	1767.0	NM_010124	13688.0	Mm.259516	NM_010124	ENSMUSG00000020091	Eif4ebp2	2810011I19Rik|4E-BP2|AA792569|BC010348|PHAS-II	eukaryotic translation initiation factor 4E binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46058141-2	chr19	46058041	46058241	+	647.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346801, intron 1 of 13)	intron (NM_001346801, intron 1 of 13)	1602.0	NM_001081214	226169.0	Mm.2415	NM_145504	ENSMUSG00000055491	Pprc1	A930018M19|BC013720|PRC|mKIAA0595	peroxisome proliferative activated receptor, gamma, coactivator-related 1	protein-coding	-0.789215810756106	0.12273700516003	-0.780725176021825	-0.783903337204527	-0.621809265191557	-0.775249713676575	-0.779819628344626	-0.78334693953372	-2.52638055356925	0.3747881940325	1
Merged-chr11-32271395-2	chr11	32271295	32271495	+	923.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M5|LINE|L1	-3688.0	NM_001284359	17168.0	Mm.263161	NM_181569	ENSMUSG00000020289	Nprl3	Aag|CGTHBA|HS-26|HS-40|Mare|Phg|Prox1|m(alpha)RE	nitrogen permease regulator-like 3	protein-coding	0.487379417404602	0.324096645385273	0.309910171999913	1.02128034494049	0.282273027281185	0.327236469267422	1.96360636821921	0.728134294078192	1.86667328815104	0.278432406970272	0.781877485457278
Merged-chr10-117866914-4	chr10	117866861	117867061	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20987.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-106210947-4	chr8	106210847	106211047	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001007567)	promoter-TSS (NM_001007567)	-14.0	NR_152744	66432.0	Mm.269029	NM_001007567	ENSMUSG00000033106	Slc7a6os	2010007L18Rik|2400002F02Rik	solute carrier family 7, member 6 opposite strand	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5178816-3	chr19	5178726	5178926	+	765.111145	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153129, intron 1 of 23)	RLTR13D3|LTR|ERVK	-60418.0	NM_008451	16594.0	Mm.271648	NM_008451	ENSMUSG00000024862	Klc2	8030455F02Rik|AW212649|KLC 2|KLC-2	kinesin light chain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-87797010-2	chr3	87796910	87797110	+	781.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011832)	promoter-TSS (NM_011832)	59.0	NM_011832	23920.0	Mm.42041	NM_011832	ENSMUSG00000005640	Insrr	Irr	insulin receptor-related receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-77084872-4	chr16	77084770	77084970	+	997.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013918, intron 17 of 23)	intron (NM_013918, intron 17 of 23)	70801.0	NM_013918	30940.0	Mm.40986	NM_013918	ENSMUSG00000022867	Usp25	-	ubiquitin specific peptidase 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-26845447-4	chr19	26845326	26845526	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21519.0	NR_045306	70942.0	Mm.411548	NR_045306	ENSMUSG00000093772	4931403E22Rik	-	RIKEN cDNA 4931403E22 gene	ncRNA	4.30171478520972	3.96539193670767	3.50381294022708	3.57529109964249	4.29503999943122	4.48107098529223	2.78666959897148	4.11957706852842	0.248194903228551	0.633404577543224	0.982417279970648
Merged-chr8-84592214-4	chr8	84592104	84592304	+	823.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252060, intron 30 of 47)	LTR16C|LTR|ERVL	70648.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	2.85453842715764	1.56059981463539	2.61255510203961	3.08042061330971	2.80120957057432	2.08460323396514	3.19146659197528	2.85600805234524	0.27471346046545	0.732428210590862	0.998431161219273
Merged-chr1-52847795-4	chr1	52847708	52847908	+	913.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146108, intron 1 of 13)	MTC|LTR|ERVL-MaLR	2770.0	NM_146108	227095.0	Mm.222063	NM_146108	ENSMUSG00000041426	Hibch	2610509I15Rik|HIBYL-COA-H	3-hydroxyisobutyryl-Coenzyme A hydrolase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-18935247-3	chr8	18935165	18935365	+	906.9365230000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176951, intron 6 of 6)	intron (NM_176951, intron 6 of 6)	15606.0	NM_001286469	319581.0	Mm.111354	NM_176951	ENSMUSG00000039814	Xkr5	5430438H03Rik|XRG5	X-linked Kx blood group related 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-42965534-4	chr4	42965416	42965616	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4430.0	NM_026088	67317.0	Mm.478018	NM_026088	ENSMUSG00000028451	1700022I11Rik	-	RIKEN cDNA 1700022I11 gene	protein-coding	5.77115785779679	3.96706018879184	5.59131280041671	5.83255716838096	5.46920371534152	5.29986045794318	4.94911497628002	4.5324068222077	-0.416437941242194	0.280708498478482	0.783484932865578
Merged-chr5-101847564-2	chr5	101847462	101847662	+	573.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 62 of 66)	ORR1D1|LTR|ERVL-MaLR	82432.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	-0.681728876215525	-0.338058968988273	-0.368677472385544	-0.67799373622893	-0.681175079391833	-0.672113288248866	-0.675080886840618	-0.388337512348728	-1.10982902817697	0.689066962780937	1
Merged-chr15-84105527-3	chr15	84105513	84105713	+	795.861145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_013873, exon 1 of 7)	5' UTR (NM_013873, exon 1 of 7)	141.0	NM_013873	29859.0	Mm.248796	NM_013873	ENSMUSG00000018865	Sult4a1	2400007A17Rik|AI853543|BR-STL|BR-STL-1|NST|ST4A1|Sultx3|mBR-STL	sulfotransferase family 4A, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-29523610-4	chr6	29523500	29523700	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3025.0	NM_001311083	27056.0	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96197210-4	chr3	96197126	96197326	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026975, exon 2 of 2)	exon (NM_026975, exon 2 of 2)	360.0	NM_026975	69168.0	Mm.104531	NM_026975	ENSMUSG00000015943	Bola1	1810037G04Rik	bolA-like 1 (E. coli)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131384645-4	chr1	131384549	131384749	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081011, intron 4 of 22)	intron (NM_001081011, intron 4 of 22)	-105086.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	4.13195307030455	4.33668914616956	3.1878749318272	3.79467825571478	4.16330012166156	3.44740979546423	3.78546639539934	4.05818814401132	-0.0428579338649697	0.930321335650892	0.998431161219273
Merged-chr1-151500972-4	chr1	151500879	151501079	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011277)	promoter-TSS (NM_011277)	12.0	NM_001360845	19821.0	Mm.474038	NM_011277	ENSMUSG00000026484	Rnf2	AI326319|AI450156|AU019207|Ring1B|dinG	ring finger protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-23903071-4	chr18	23902970	23903170	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51618.0	NM_027007	69256.0	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-103339547-4	chr15	103339438	103339638	+	908.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013866, intron 1 of 7)	intron (NM_013866, intron 1 of 7)	548.0	NM_013866	29813.0	Mm.14099	NM_013866	ENSMUSG00000000552	Zfp385a	Hzf|Zfp385|Znf385a	zinc finger protein 385A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-17490448-3	chr18	17490345	17490545	+	818.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	90545.0	NR_045374	75162.0	Mm.60874	NR_045374		4930545E07Rik	-	RIKEN cDNA 4930545E07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-57549221-2	chr18	57549121	57549321	+	687.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_027945, exon 2 of 4)	non-coding (NR_027945, exon 2 of 4)	2646.0	NR_027945	75084.0	Mm.243841	NR_015494	ENSMUSG00000086607	4930511M06Rik	-	RIKEN cDNA 4930511M06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-43354084-2	chr5	43353984	43354184	+	690.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-118730.0	NR_028417	665934.0	Mm.381491	NR_028417	ENSMUSG00000085720	Gm7854	EG665934	predicted gene 7854	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-56064537-4	chr16	56064434	56064634	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360073, intron 1 of 24)	(CAAAA)n|Simple_repeat|Simple_repeat	7004.0	NM_001360073	66315.0	Mm.255784	NM_025483	ENSMUSG00000052917	Senp7	2410152H17Rik|2810413I22Rik|2900036C23Rik|6030449K19Rik|AI790676	SUMO1/sentrin specific peptidase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-99632268-2	chr12	99632168	99632368	+	622.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MERVL-int|LTR|ERVL	-4294.0	NR_045288	73457.0	Mm.383439	NR_045288	ENSMUSG00000100211	1700064M15Rik	-	RIKEN cDNA 1700064M15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-86209452-3	chr6	86209352	86209552	+	567.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031199, intron 1 of 5)	intron (NM_031199, intron 1 of 5)	14225.0	NM_031199	21802.0	Mm.137222	NM_031199	ENSMUSG00000029999	Tgfa	wa-1|wa1	transforming growth factor alpha	protein-coding	0.0342582973893948	0.0600237050482343	0.0517085398881776	0.547591811985718	0.36299947551833	0.061882117373347	0.0535526191710541	1.27419056022411	2.09802870018483	0.316265552551084	1
Merged-chr9-99493466-4	chr9	99493377	99493577	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028768, intron 18 of 21)	L1MD|LINE|L1	23056.0	NR_028123	69797.0	Mm.307159	NR_028123	ENSMUSG00000046242	1600029I14Rik	-	RIKEN cDNA 1600029I14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-111507705-4	chr10	111507618	111507818	+	872.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009344, intron 1 of 1)	intron (NM_009344, intron 1 of 1)	1432.0	NM_009344	21664.0	Mm.3117	NM_009344	ENSMUSG00000020205	Phlda1	DT1P1B11|TDAG51|Tdag	pleckstrin homology like domain, family A, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128396155-4	chr2	128396042	128396242	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028591, intron 1 of 1)	intron (NR_028591, intron 1 of 1)	33209.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-105742637-4	chr1	105742554	105742754	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173187, intron 24 of 28)	intron (NM_173187, intron 24 of 28)	-38069.0	NM_009399	21934.0	Mm.6251	NM_009399	ENSMUSG00000026321	Tnfrsf11a	Ly109|ODFR|OFE|Rank|TRANCE-R|mRANK	tumor necrosis factor receptor superfamily, member 11a, NFKB activator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-55963525-3	chr4	55963406	55963606	+	695.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-431031.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-125117277-2	chr4	125117177	125117377	+	596.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10604.0	NM_153159	230738.0	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-12030290-2	chr5	12030190	12030390	+	855.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	112247.0	NM_001177510	545732.0	Mm.389066	NM_001177510	ENSMUSG00000067848	4933402N22Rik	-	RIKEN cDNA 4933402N22 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-32363922-2	chr18	32363822	32364022	+	709.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_045403, intron 2 of 2)	B4A|SINE|B4	-13295.0	NM_001083334	30948.0	Mm.4383	NM_009668	ENSMUSG00000024381	Bin1	ALP-1|Amphl|BRAMP-2|SH3P9	bridging integrator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-5404379-2	chr2	5404279	5404479	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_030601, intron 1 of 1)	intron (NR_030601, intron 1 of 1)	24989.0	NR_030601	100124465.0		NR_030601	ENSMUSG00000078031	Mir466d	Mirn466d	microRNA 466d	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26583038-1	chr17	26582938	26583138	+	580.0	f1_balb.idr	intron (NM_026170, intron 1 of 9)	intron (NM_026170, intron 1 of 9)	21526.0	NM_026170	67458.0	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	1.79957855332623	1.24022966239546	1.94872242394214	1.41752432663417	2.03028210095233	2.16365025673709	2.30584121584008	2.40658293788449	1.68127018877892	0.0916795824713679	0.468338758369914
Merged-chr12-76804086-2	chr12	76803986	76804186	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347406, intron 2 of 6)	intron (NM_001347406, intron 2 of 6)	-8532.0	NM_030677	14776.0	Mm.441856	NM_030677	ENSMUSG00000042808	Gpx2	GI-GPx|GPx-GI|GSHPx-2|GSHPx-GI	glutathione peroxidase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115536342-4	chr11	115536252	115536452	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133354)	promoter-TSS (NM_133354)	-122.0	NM_133354	170930.0	Mm.29923	NM_133354	ENSMUSG00000020738	Sumo2	SUMO-2|Smt3A|Smt3b|Smt3h2	small ubiquitin-like modifier 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-32904436-2	chr19	32904336	32904536	+	582.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	146859.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	-1.31349849087795	-1.28274354783242	-1.29349452597086	-1.3023256995151	-1.3130151546297	-1.28041376602105	-0.694015972326031	-1.30074492367298	2.57396649482007	0.456321314346772	1
Merged-chr11-116053244-2	chr11	116053144	116053344	+	604.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172569, intron 8 of 15)	intron (NM_172569, intron 8 of 15)	22928.0	NM_172569	217331.0	Mm.297706	NM_172569	ENSMUSG00000020770	Unk	B230379M23Rik|Unkh|Zc3h5|Zc3hdc5|mKIAA1753	unkempt family zinc finger	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-28317013-4	chr5	28316918	28317118	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028234)	promoter-TSS (NM_028234)	-171.0	NM_028234	381626.0	Mm.304075	NM_028234	ENSMUSG00000048271	Rbm33	3200001K10Rik|6430512A10Rik|AA386890|Prr8	RNA binding motif protein 33	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-84551669-4	chr7	84551560	84551760	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045098, intron 1 of 2)	intron (NR_045098, intron 1 of 2)	22706.0	NR_045098	100039239.0	Mm.44882	NR_045098		Gm2115	C77713	predicted gene 2115	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-66295935-4	chr14	66295843	66296043	+	894.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038077, intron 2 of 2)	MTD|LTR|ERVL-MaLR	-1082.0	NM_029979	66854.0	Mm.43871	NM_029979	ENSMUSG00000022043	Trim35	0710005M05Rik|A430106H13Rik|AW046487|HLS5|Mair|NC8|mKIAA1098	tripartite motif-containing 35	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-5801134-3	chr13	5801119	5801319	+	779.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56873.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-107935429-4	chr4	107935322	107935522	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-11833.0	NM_009949	12896.0	Mm.307620	NM_009949	ENSMUSG00000028607	Cpt2	AI323697|CPTII	carnitine palmitoyltransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-77012161-2	chr16	77012061	77012261	+	788.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1280.0	NR_040573	76601.0	Mm.396217	NR_040573	ENSMUSG00000100857	1700041M19Rik	-	RIKEN cDNA 1700041M19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-45752991-4	chr11	45752907	45753107	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55076.0	NR_045876	100009664.0	Mm.415439	NR_045876		F630206G17Rik	-	RIKEN cDNA F630206G17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-45966197-3	chr13	45966120	45966320	+	900.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1229.0	NM_009124	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-53142622-4	chr19	53142527	53142727	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001277100)	promoter-TSS (NM_001277100)	-129.0	NM_001277100	27360.0	Mm.426080	NM_013758	ENSMUSG00000025026	Add3	AI463285|R75380	adducin 3 (gamma)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-55754577-4	chr17	55754477	55754677	+	963.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139138, intron 1 of 16)	L1_Mus2|LINE|L1	4593.0	NM_139138	52614.0	Mm.210497	NM_139138	ENSMUSG00000032915	Adgre4	D17Ertd479e|Egf-tm7|Emr4|Fire|Gpr127	adhesion G protein-coupled receptor E4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-83694720-2	chr8	83694603	83694803	+	806.833374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199593)	promoter-TSS (NM_001199593)	-642.0	NM_001199593	320795.0	Mm.213000	NM_177262	ENSMUSG00000057672	Pkn1	DBK|F730027O18Rik|PAK1|PRK1|Pkn|Prkcl1|Stk3	protein kinase N1	protein-coding	-0.270057622010525	-0.395460610223221	-0.399220560462769	-0.402112101318613	-0.145428764406512	0.208068579379133	-0.398392452272677	-0.241734295562391	2.63791629442166	0.265633863549286	1
Merged-chr5-134613893-3	chr5	134613756	134613956	+	711.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020044, intron 1 of 12)	intron (NM_020044, intron 1 of 12)	1169.0	NM_022964	56743.0	Mm.391375	NM_020044	ENSMUSG00000040751	Lat2	AW125574|LAB|NTAL|WSCR5|Wbscr15|Wbscr5	linker for activation of T cells family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-134586351-3	chr4	134586272	134586472	+	649.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207237, intron 4 of 11)	intron (NM_207237, intron 4 of 11)	-18521.0	NR_105829	102465216.0		NR_105829	ENSMUSG00000099289	Mir6403	Gm27992|mmu-mir-6403	microRNA 6403	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-118466563-4	chr5	118466454	118466654	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER58A|DNA|hAT-Charlie	-94165.0	NM_001347445	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16507462-3	chr7	16507363	16507563	+	845.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172739, intron 5 of 6)	intron (NM_172739, intron 5 of 6)	-30683.0	NM_008718	18142.0	Mm.145821	NM_008718	ENSMUSG00000001988	Npas1	MOP5|bHLHe11	neuronal PAS domain protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-59053783-2	chr8	59053683	59053883	+	636.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	142028.0	NM_173411	234290.0	Mm.39244	NM_173411	ENSMUSG00000049946	BC030500	-	cDNA sequence BC030500	protein-coding	-1.17367364971587	-1.14665061133654	-1.15856004380685	-1.16834280623128	-1.17310571790619	-1.14406978763884	-0.42938571406771	-1.16659169643457	2.89727187181404	0.396361616615464	1
Merged-chr11-102267613-3	chr11	102267491	102267691	+	571.888916	f0_balb.idr|f0_c57.idr|f1_balb.idr	Intergenic	Intergenic	-1232.0	NM_148953	217217.0	Mm.216432	NM_148953	ENSMUSG00000034768	Asb16	-	ankyrin repeat and SOCS box-containing 16	protein-coding	0.991617896481039	1.50176441097698	0.784954159981754	0.573177303477857	0.56070346522658	0.595517924862659	1.10815776931062	1.39022681408611	-0.201779309545759	0.898891971998061	0.998431161219273
Merged-chr5-135010726-4	chr5	135010602	135010802	+	942.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145215, intron 2 of 5)	intron (NM_145215, intron 2 of 5)	1246.0	NR_033794	68758.0	Mm.389700	NM_145215	ENSMUSG00000040532	Abhd11	1110054D16Rik|A630008N09Rik|Wbscr21	abhydrolase domain containing 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-108350984-4	chr11	108350844	108351044	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7056.0	NM_011101	18750.0	Mm.222178	NM_011101	ENSMUSG00000050965	Prkca	AI875142|Pkca	protein kinase C, alpha	protein-coding	3.31730079254255	2.51081831409076	3.27659734205407	3.34651185487416	3.27718868310698	3.21709097307115	3.11195665449872	3.50404534495817	0.20702444812113	0.727495082600372	0.998431161219273
Merged-chr17-51382755-4	chr17	51382655	51382855	+	896.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_037268, intron 3 of 4)	intron (NR_037268, intron 3 of 4)	65514.0	NR_046166	328837.0	Mm.236143	NR_046166		C330011F03Rik	C330011F03	RIKEN cDNA C330011F03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167723830-2	chr2	167723730	167723930	+	784.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32653.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-67991692-2	chr15	67991592	67991792	+	684.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	267164.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-26638896-4	chr14	26638801	26639001	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007479, intron 1 of 5)	intron (NM_007479, intron 1 of 5)	767.0	NM_007479	11843.0	Mm.297768	NM_007479	ENSMUSG00000021877	Arf4	AA407803	ADP-ribosylation factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-58874151-2	chr9	58874051	58874251	+	608.166626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001042752)	TTS (NM_001042752)	50639.0	NM_001081192	330953.0	Mm.151967	NM_001081192	ENSMUSG00000032338	Hcn4	Bcng3|Hcn3	hyperpolarization-activated, cyclic nucleotide-gated K+ 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21201291-2	chr9	21201191	21201391	+	705.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_019798, exon 3 of 10)	exon (NM_019798, exon 3 of 10)	4586.0	NM_019798	18577.0	Mm.191749	NM_019798	ENSMUSG00000032177	Pde4a	D9Ertd60e|Dpde2	phosphodiesterase 4A, cAMP specific	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-30217201-1	chr14	30217101	30217301	+	540.0	f0_c57.idr	intron (NM_001083616, intron 3 of 46)	intron (NM_001083616, intron 3 of 46)	136285.0	NM_001302637	12289.0	Mm.9772	NM_028981	ENSMUSG00000015968	Cacna1d	8430418G19Rik|C79217|Cach3|Cacn4|Cacnl1a2|Cav1.3|Cchl1a|Cchl1a2|D-LTCC	calcium channel, voltage-dependent, L type, alpha 1D subunit	protein-coding	-2.18138529563533	-2.15523716995652	-2.1631445789866	-2.16963996020037	-2.05513010215571	-2.15352360143315	-2.16135451490766	-2.16847729006863	0.759018020146679	0.829933115115583	1
Merged-chr1-106932164-4	chr1	106932053	106932253	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2296.0	NM_027971	71869.0	Mm.321740	NM_027971	ENSMUSG00000059956	Serpinb12	2300003F07Rik|4833409F13Rik	serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), member 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118155113-2	chr11	118155013	118155213	+	751.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A0|LTR|ERVL-MaLR	-25894.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-111164689-4	chr10	111164588	111164788	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175489)	promoter-TSS (NM_175489)	-114.0	NM_001003717	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-57436056-2	chr17	57435956	57436156	+	993.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355722, intron 12 of 22)	L1Md_F2|LINE|L1	77370.0	NM_010130	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-116161148-4	chr9	116161030	116161230	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009371, intron 1 of 7)	intron (NM_009371, intron 1 of 7)	14233.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	4.7179033095255	4.51418756213398	4.14162088800137	4.80492113413827	4.36047360707051	3.54774774001604	3.80870032582548	4.32990738930862	-0.656956093979329	0.116512723541119	0.534780130868259
Merged-chr18-55197418-4	chr18	55197315	55197515	+	998.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-204824.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	1.34850041237992	3.26817321059545	2.15073393372873	2.8255410819349	2.27921589789739	2.57026462399808	2.83477758434137	3.4059374316647	0.470195321120973	0.580608565599398	0.966599221005409
Merged-chr4-22381927-3	chr4	22381829	22382029	+	736.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172988, intron 3 of 8)	intron (NM_172988, intron 3 of 8)	24386.0	NR_104380	269514.0	Mm.40708	NM_172988	ENSMUSG00000040410	Fbxl4	AI836810|FBL4|FBL5	F-box and leucine-rich repeat protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-170901332-2	chr1	170901232	170901432	+	814.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	11609.0	NM_001029984	435653.0	Mm.337931	NM_001029984	ENSMUSG00000070524	Fcrlb	FREB-2|FREB2|FcRL2|Fcrlm2|Fcry|mFCRL2	Fc receptor-like B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-107367933-7	chr4	107367815	107368015	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_028355, exon 1 of 18)	5' UTR (NM_028355, exon 1 of 18)	131.0	NM_028355	72787.0	Mm.28478	NM_028355	ENSMUSG00000028614	Ndc1	2810475A17Rik|AI450313|Tmem48|sks	NDC1 transmembrane nucleoporin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-55934805-4	chr16	55934673	55934873	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028815)	promoter-TSS (NM_028815)	75.0	NM_001159364	74201.0	Mm.178427	NM_028815	ENSMUSG00000022604	Cep97	2810403B08Rik|4932439K18Rik|AA437768|E130116N02Rik|Lrriq2	centrosomal protein 97	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105825696-4	chr8	105825604	105825804	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145824, intron 2 of 13)	intron (NM_145824, intron 2 of 13)	1646.0	NM_145824	74334.0	Mm.4206	NM_145824	ENSMUSG00000037415	Ranbp10	4432417N03Rik	RAN binding protein 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-25622717-4	chr19	25622625	25622825	+	821.395813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177360, exon 2 of 2)	exon (NM_177360, exon 2 of 2)	12188.0	NM_177360	240590.0	Mm.62785	NM_177360	ENSMUSG00000042372	Dmrt3	-	doublesex and mab-3 related transcription factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-3403308-4	chr9	3403220	3403420	+	988.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027545)	promoter-TSS (NM_027545)	-765.0	NM_027545	244672.0	Mm.245482	NM_027545	ENSMUSG00000025898	Cwf19l2	3230401L03Rik|9030209E10	CWF19-like 2, cell cycle control (S. pombe)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-115643089-5	chr3	115642930	115643130	+	900.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER5A|DNA|hAT-Charlie	72025.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-53462099-4	chr6	53462047	53462247	+	881.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001327821, intron 5 of 10)	intron (NM_001327821, intron 5 of 10)	-111227.0	NM_172728	231991.0	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118265853-2	chr11	118265753	118265953	+	948.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033528, intron 15 of 20)	intron (NM_001033528, intron 15 of 20)	-17261.0	NM_011180	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30090889-2	chr7	30090789	30090989	+	895.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_152814)	promoter-TSS (NM_152814)	-379.0	NM_152814	72556.0	Mm.441512	NM_152814	ENSMUSG00000078768	Zfp566	2700043M03Rik|mszf4	zinc finger protein 566	protein-coding	1.05638214740448	0.76044750968528	1.93893167592826	0.732377884284467	1.32390343269417	1.75956475653164	0.7482496907816	1.27367490751141	0.28524536718554	0.843079340082203	0.998431161219273
Merged-chr12-112761434-4	chr12	112761335	112761535	+	832.270813	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178911, intron 1 of 10)	intron (NM_178911, intron 1 of 10)	780.0	NM_178911	104759.0	Mm.203915	NM_178911	ENSMUSG00000052160	Pld4	AI132321|thss	phospholipase D family, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-22990525-4	chr11	22990424	22990624	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009837)	promoter-TSS (NM_009837)	-69.0	NM_009837	12464.0	Mm.296985	NM_009837	ENSMUSG00000007739	Cct4	2610204B21Rik|A45|C78323|Cctd	chaperonin containing Tcp1, subunit 4 (delta)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117112425-2	chr11	117112325	117112525	+	991.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2747.0	NR_029459	74136.0	Mm.272312	NM_028777	ENSMUSG00000020823	Sec14l1	1200017E04Rik|2810012L19Rik|Naa-35	SEC14-like lipid binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-127498945-2	chr2	127498845	127499045	+	908.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019789, intron 2 of 8)	intron (NM_019789, intron 2 of 8)	-16446.0	NM_001111331	56461.0	Mm.315292	NM_019789	ENSMUSG00000079056	Kcnip3	4933407H12Rik|AI413860|Csen|DREAM|KChIP3|R74849	Kv channel interacting protein 3, calsenilin	protein-coding	-2.18308165884198	-2.15547475440471	-2.16382331017202	-2.1706810624505	-2.18114370519566	-2.15366558754311	-2.03057248461154	-2.16945352807143	0.759018020146679	0.829933115115583	1
Merged-chr6-120912991-2	chr6	120912891	120913091	+	744.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_007544, intron 1 of 5)	intron (NM_007544, intron 1 of 5)	3833.0	NM_007544	12122.0	Mm.235081	NM_007544	ENSMUSG00000004446	Bid	2700049M22Rik|AI875481|AU022477	BH3 interacting domain death agonist	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6365121-2	chr19	6365021	6365221	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360393, intron 1 of 11)	intron (NM_001360393, intron 1 of 11)	1431.0	NR_122118	22668.0	Mm.256422	NM_011750	ENSMUSG00000024949	Sf1	BBP|MZFM|WBP4|Zfp162	splicing factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-27232974-4	chr7	27232878	27233078	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133770)	promoter-TSS (NM_133770)	-35.0	NM_133770	76889.0	Mm.124728	NM_133770	ENSMUSG00000003762	Coq8b	0610012P18Rik|Adck4	coenzyme Q8B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76704084-2	chr15	76703984	76704184	+	660.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_027122, exon 5 of 5)	3' UTR (NM_027122, exon 5 of 5)	2542.0	NM_027122	69572.0	Mm.34920	NM_027122	ENSMUSG00000019080	Mfsd3	2310010G13Rik	major facilitator superfamily domain containing 3	protein-coding	0.296690693760162	0.317618764636683	0.768268685215676	0.938150356575528	0.87301108236714	0.681342701515064	0.312282448396478	0.306407181626737	-0.267424158450001	0.888435753238555	1
Merged-chr2-129903577-4	chr2	129903489	129903689	+	884.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-102130.0	NR_029452	654409.0	Mm.305555	NR_029452		Stk35os1	4932416H05Rik	serine/threonine kinase 35, opposite strand 1	ncRNA	3.0233897496814	3.17880103806042	3.6171489858805	3.28009385559403	3.50471905839723	3.51456941665589	3.48705696019073	3.96000995242677	0.538067258306428	0.316902089043258	0.820262749390409
Merged-chr15-59867507-2	chr15	59867407	59867607	+	653.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72548.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	-1.20406370813143	-1.56956373024278	-1.57884638916872	-1.58647144159385	-1.598104728449	-1.56755213932999	-1.57674499865798	-1.58510656085539	-1.70745470802464	0.626337835847419	1
Merged-chr17-32196347-2	chr17	32196247	32196447	+	585.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_020508)	TTS (NM_020508)	-6877.0	NM_001347341	71932.0	Mm.176240	NM_001033163	ENSMUSG00000037577	Ephx3	2310063B19Rik|Abhd9|EH3	epoxide hydrolase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-21423199-4	chr17	21423106	21423306	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011760)	promoter-TSS (NM_011760)	-21.0	NM_011760	22712.0	Mm.12916	NM_011760	ENSMUSG00000023882	Zfp54	2810034D10Rik|KRAB10|Zfp-54|Zfp76|mszf83	zinc finger protein 54	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-92700226-4	chr16	92700126	92700326	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111022, intron 2 of 6)	intron (NM_001111022, intron 2 of 6)	-2897.0	NM_009821	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-44199407-2	chr5	44199307	44199507	+	657.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_173764, intron 3 of 13)	intron (NM_173764, intron 3 of 13)	27199.0	NM_173764	231225.0	Mm.30688	NM_173764	ENSMUSG00000046985	Tapt1	4932414K18Rik	transmembrane anterior posterior transformation 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-58622822-3	chr13	58622716	58622916	+	960.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11939.0	NM_022317	114304.0	Mm.18188	NM_022317	ENSMUSG00000021553	Slc28a3	Cnt3	solute carrier family 28 (sodium-coupled nucleoside transporter), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52822906-4	chr13	52822797	52822997	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65692.0	NR_027893	105404.0	Mm.184173	NR_027893		BB123696	-	expressed sequence BB123696	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16173081-2	chr7	16172979	16173179	+	785.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2316.0	NM_001277988	17537.0	Mm.360516	NM_008627	ENSMUSG00000041420	Meis3	AI573393|Mrg2	Meis homeobox 3	protein-coding	-1.58994551673671	-1.55912852307891	-1.56844783632235	-1.57610299769523	-1.18549093183599	-1.55710898902261	-1.56633814807757	-1.57473272746952	1.78703309985663	0.610309988231842	1
Merged-chr3-30812999-2	chr3	30812899	30813099	+	751.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357528, intron 6 of 8)	ID4|SINE|ID	20123.0	NM_001357528	69276.0	Mm.26017	NM_027016	ENSMUSG00000027706	Sec62	3100002M17Rik|AI844545|AW545092|Dtrp1|HTP1|Tloc1	SEC62 homolog (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-88242759-4	chr7	88242666	88242866	+	797.987488	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35319.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-99480564-4	chr12	99480495	99480695	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-30521.0	NM_183186	71375.0	Mm.341972	NM_183186	ENSMUSG00000033713	Foxn3	5430426H20Rik|AA589593|AW556347|Ches1|Ches1l|HTLFL1	forkhead box N3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-9844404-2	chr4	9844304	9844504	+	855.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013526)	promoter-TSS (NM_013526)	32.0	NM_013526	242316.0	Mm.302555	NM_013526	ENSMUSG00000051279	Gdf6	BMP-13|BMP13|GDF16	growth differentiation factor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-33749602-2	chr17	33749502	33749702	+	554.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008997, intron 2 of 4)	intron (NM_008997, intron 2 of 4)	10884.0	NM_008997	19326.0	Mm.387587	NM_008997	ENSMUSG00000077450	Rab11b	A730055L17Rik	RAB11B, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141599954-2	chr4	141599850	141600050	+	822.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163256)	promoter-TSS (NM_001163256)	-26.0	NM_001163256	74202.0	Mm.490327	NM_133754	ENSMUSG00000006219	Fblim1	2410043F08Rik|Cal|Fblp1|Gt10|migfilin|migfilin(s)	filamin binding LIM protein 1	protein-coding	1.07744051040065	0.408759904822124	0.195074885414776	0.189437395497992	0.875279380451997	0.414105429296766	0.196681336134758	0.190424304643825	-0.439176824286255	0.823603068575321	1
Merged-chr9-97316837-2	chr9	97316737	97316937	+	819.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53121.0	NM_030219	78911.0	Mm.108347	NM_030219	ENSMUSG00000032451	Trim42	4930486B16Rik	tripartite motif-containing 42	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-86759276-2	chr11	86759176	86759376	+	701.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1709.0	NM_001356393	67300.0	Mm.254588	NM_001003908	ENSMUSG00000047126	Cltc	3110065L21Rik|CHC|R74732	clathrin, heavy polypeptide (Hc)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-72427847-2	chr12	72427747	72427947	+	598.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14019.0	NM_001142728	78257.0	Mm.266280	NM_030070	ENSMUSG00000021090	Lrrc9	4921529O18Rik|4930432K16Rik	leucine rich repeat containing 9	protein-coding	-1.22315906685268	-1.19557143632602	-1.20673282037136	-0.55836125556573	-1.22265483704505	-1.19315271784257	-1.20420612767407	-1.21425999345206	-2.67891099987134	0.437057736398543	1
Merged-chr17-57094942-2	chr17	57094842	57095042	+	726.333374	f1_balb.idr|f1_c57bl6.idr	intron (NR_033508, intron 3 of 3)	MTD|LTR|ERVL-MaLR	-7160.0	NM_009451	22153.0	Mm.7420	NM_009451	ENSMUSG00000062591	Tubb4a	AI325297|M(beta)4|Tubb|Tubb4	tubulin, beta 4A class IVA	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135765585-2	chr5	135765485	135765685	+	936.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289557, intron 3 of 6)	intron (NM_001289557, intron 3 of 6)	12716.0	NM_001289554	76571.0	Mm.247666	NM_029659	ENSMUSG00000019178	Styxl1	1700011C14Rik|Dusp24|Mkstyx	serine/threonine/tyrosine interacting-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-63567240-4	chr1	63567138	63567338	+	944.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011780, intron 21 of 25)	intron (NM_011780, intron 21 of 25)	119689.0	NM_001081658	241073.0	Mm.297680	NM_001081658	ENSMUSG00000069085	Dytn	Gm215	dystrotelin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-56004005-4	chr13	56003928	56004128	+	854.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	131522.0	NM_012015	26914.0	Mm.283802	NM_012015	ENSMUSG00000015937	H2afy	H2AF12M|mH2a1|macroH2A1	H2A histone family, member Y	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-53409401-4	chr15	53409309	53409509	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63226.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-78245089-4	chr17	78244993	78245193	+	932.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015800, intron 2 of 16)	intron (NM_015800, intron 2 of 16)	44845.0	NM_015800	50766.0	Mm.311912	NM_015800	ENSMUSG00000024074	Crim1	AU015004	cysteine rich transmembrane BMP regulator 1 (chordin like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-53134970-2	chr15	53134870	53135070	+	801.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010162, intron 1 of 10)	(TCTA)n|Simple_repeat|Simple_repeat	211213.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-142715636-3	chr6	142715548	142715748	+	783.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13374.0	NM_001310143	20928.0	Mm.35670	NM_011511	ENSMUSG00000030249	Abcc9	AI414027|AI449286|SUR2A|SUR2B|Sur2	ATP-binding cassette, sub-family C (CFTR/MRP), member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81193684-2	chr10	81193584	81193784	+	829.333313	f1_balb.idr|f1_c57bl6.idr	TTS (NM_007828)	TTS (NM_007828)	-1007.0	NR_015477	69678.0	Mm.81562	NR_015477		Atcayos	2310050B05Rik	ataxia, cerebellar, Cayman type, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166719509-4	chr2	166719403	166719603	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1L|LTR|ERVL-MaLR	-5671.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-54075665-4	chr6	54075576	54075776	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163640, intron 1 of 12)	MLT1D|LTR|ERVL-MaLR	35744.0	NM_001163640	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	2.94122443072556	2.90920819385775	2.55589690022272	3.97030094674163	3.11303053752053	1.59364310141631	2.93974567603734	2.34745120171301	-1.02690646786732	0.183202940593824	0.658051785801345
Merged-chr4-34614904-4	chr4	34614809	34615009	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015824)	promoter-TSS (NM_015824)	33.0	NM_001159563	50793.0	Mm.399624	NM_015824	ENSMUSG00000040044	Orc3	Orc3l	origin recognition complex, subunit 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-49700088-4	chr16	49699983	49700183	+	994.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028680, intron 1 of 10)	intron (NM_028680, intron 1 of 10)	789.0	NM_028680	73916.0	Mm.241276	NM_028680	ENSMUSG00000032965	Ift57	4833420A15Rik|Esrrbl1|Hippi|MHS4R2	intraflagellar transport 57	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99040457-2	chr7	99040357	99040557	+	576.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 6 of 14)	ORR1F|LTR|ERVL-MaLR	100687.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32757723-4	chr2	32757668	32757868	+	911.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290563, intron 14 of 14)	intron (NM_001290563, intron 14 of 14)	534.0	NM_152800	30933.0	Mm.200695	NM_152800	ENSMUSG00000009563	Tor2a	Prosalusin	torsin family 2, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140620901-2	chr5	140620801	140621001	+	873.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_175274, exon 14 of 14)	3' UTR (NM_175274, exon 14 of 14)	13560.0	NM_008494	16848.0	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-86041043-4	chr1	86040948	86041148	+	803.829163	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb-int|LTR|ERVL-MaLR	-4815.0	NM_001144993	72792.0	Mm.54981	NM_001144992	ENSMUSG00000026227	2810459M11Rik	-	RIKEN cDNA 2810459M11 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-106812760-2	chr13	106812660	106812860	+	896.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360897, intron 29 of 30)	intron (NM_001360897, intron 29 of 30)	124198.0	NM_001360897	76582.0	Mm.132208	NM_029665	ENSMUSG00000042590	Ipo11	1700081H05Rik|2510001A17Rik|AI314624|AW555235|E330021B14Rik|Ranbp11	importin 11	protein-coding	-0.443874032215819	-0.432293594830825	0.120579386130175	-0.439026151630157	-0.300574014585914	-0.431434674254107	0.0183291144602521	-0.43851502320799	-0.0416974965250587	0.987057544397458	1
Merged-chr7-4064071-7	chr7	4063993	4064193	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113474)	promoter-TSS (NM_001113474)	-889.0	NM_001302676	52855.0	Mm.290880	NM_178611	ENSMUSG00000055541	Lair1	5133400O11Rik|BB115266|D7Bwg0421e|Lair-1	leukocyte-associated Ig-like receptor 1	protein-coding	3.10676838165384	2.5463707296933	2.90701891338495	1.40417793229583	2.86126393295891	3.5035838725589	2.60739456318347	1.68117241483004	0.330827601109323	0.704508201781634	0.998431161219273
Merged-chr7-46569674-2	chr7	46569574	46569774	+	789.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013789, intron 9 of 10)	B3|SINE|B2	70133.0	NM_013789	27414.0	Mm.76659	NM_013789	ENSMUSG00000030839	Sergef	DelGEF|Gef|Gnef|Gnefr	secretion regulating guanine nucleotide exchange factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-87377449-3	chr3	87377340	87377540	+	736.466675	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001136236, intron 1 of 8)	intron (NM_001136236, intron 1 of 8)	1053.0	NM_178165	229499.0	Mm.255203	NM_153090	ENSMUSG00000059994	Fcrl1	A230020G22Rik|Bxmas1|Bxmh1|Bxmh1b|Fcrh1|Fcrh1l|Fcrh1s|Ifgp1	Fc receptor-like 1	protein-coding	2.5121155789225	1.40734586060564	3.61988378209735	3.20091063918181	2.32407359712518	2.16388410329524	1.65734101675742	2.56621780915847	-1.36704157681691	0.122756804093277	0.549408285819912
Merged-chr13-99334221-4	chr13	99334138	99334338	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026873, intron 4 of 9)	RMER16_Mm|LTR|ERVK	10440.0	NM_026873	68927.0	Mm.276502	NM_026873	ENSMUSG00000021650	Ptcd2	1190005P08Rik	pentatricopeptide repeat domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97470978-2	chr6	97470878	97471078	+	586.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	-11692.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	-1.25107688335731	-1.22532476799204	-1.23537057180442	-1.08799401379441	-0.986231049324976	-1.22314780039883	-1.23309642201904	-1.08546440784811	1.15041688829659	0.713557677309137	1
Merged-chr3-149281569-4	chr3	149281449	149281649	+	913.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6812.0	NR_040591	381482.0	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA	0.434220736244372	1.18724526241245	0.290077536137684	0.975765023453224	0.274049578635246	0.300462921030453	0.802342769763411	0.284631050078158	-1.98509112304079	0.293602136009359	1
Merged-chr18-55624336-3	chr18	55624260	55624460	+	989.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-631769.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-103343858-2	chr11	103343758	103343958	+	693.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045346)	promoter-TSS (NR_045346)	844.0	NM_133715	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-106375203-4	chr1	106375107	106375307	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133821, intron 12 of 16)	Lx7|LINE|L1	171424.0	NR_106164	102466254.0		NR_106164	ENSMUSG00000098344	Mir3473f	Gm27846|mmu-mir-3473f	microRNA 3473f	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-53564418-4	chr19	53564321	53564521	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35103.0	NM_001085390	240672.0	Mm.482424	NM_001085390	ENSMUSG00000034765	Dusp5	Gm337	dual specificity phosphatase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117073436-2	chr10	117073336	117073536	+	592.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177798, exon 10 of 10)	3' UTR (NM_177798, exon 10 of 10)	-9584.0	NM_007636	12461.0	Mm.247788	NM_007636	ENSMUSG00000034024	Cct2	Cctb	chaperonin containing Tcp1, subunit 2 (beta)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30514982-4	chr2	30514872	30515072	+	981.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40773.0	NM_030244	72500.0	Mm.295464	NM_030244	ENSMUSG00000089762	Ier5l	2610524G09Rik	immediate early response 5-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-74378029-2	chr1	74377929	74378129	+	684.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013612, intron 4 of 14)	intron (NM_013612, intron 4 of 14)	2826.0	NM_013612	18173.0	Mm.2913	NM_013612	ENSMUSG00000026177	Slc11a1	Bcg|Ity|Ity1|Lsh|Nramp|Nramp1|ity	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89386963-2	chr3	89386863	89387063	+	864.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355206, intron 1 of 3)	intron (NM_001355206, intron 1 of 3)	708.0	NM_001355212	22724.0	Mm.262184	NM_009565	ENSMUSG00000028042	Zbtb7b	Thpok|Zfp67|c-Krox	zinc finger and BTB domain containing 7B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127673811-2	chr10	127673711	127673911	+	764.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3254.0	NM_173732	210035.0	Mm.251075	NM_173732	ENSMUSG00000040195	Nemp1	Tmem194|Tmem194a	nuclear envelope integral membrane protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-103992780-1	chr14	103992680	103992880	+	545.0	f1_balb.idr	intron (NR_045953, intron 1 of 2)	intron (NR_045953, intron 1 of 2)	34362.0	NR_045953	73877.0	Mm.399172	NR_045953	ENSMUSG00000115727	4930432J09Rik	-	RIKEN cDNA 4930432J09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-43626150-2	chr7	43626050	43626250	+	979.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8589.0	NM_028236	72431.0	Mm.158821	NM_028236	ENSMUSG00000030472	Ceacam18	2010110O04Rik	carcinoembryonic antigen-related cell adhesion molecule 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-57447952-2	chr17	57447852	57448052	+	581.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001355723, exon 16 of 22)	exon (NM_001355723, exon 16 of 22)	89266.0	NM_010130	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-29533801-2	chr10	29533701	29533901	+	569.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028351, intron 1 of 4)	intron (NM_028351, intron 1 of 4)	2066.0	NM_028351	72780.0	Mm.45191	NM_028351	ENSMUSG00000019880	Rspo3	2810459H04Rik|AW742308|Cristin1|Thsd2	R-spondin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-33601942-4	chr8	33601822	33602022	+	784.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017374, intron 1 of 6)	intron (NM_017374, intron 1 of 6)	2301.0	NM_017374	19053.0	Mm.29301	NM_017374	ENSMUSG00000009630	Ppp2cb	AI115466|D8Ertd766e|PP2Ac	protein phosphatase 2 (formerly 2A), catalytic subunit, beta isoform	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-92135047-2	chr3	92134913	92135113	+	675.833313	f1_balb.idr|f1_c57bl6.idr	TTS (NM_027042)	TTS (NM_027042)	7741.0	NM_027042	69332.0	Mm.120271	NM_027042	ENSMUSG00000027927	Lelp1	1700012F11Rik	late cornified envelope-like proline-rich 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19816464-4	chr7	19816385	19816585	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033601, intron 2 of 8)	intron (NM_033601, intron 2 of 8)	6270.0	NM_033601	12051.0	Mm.439658	NM_033601	ENSMUSG00000053175	Bcl3	AI528691|Bcl-3	B cell leukemia/lymphoma 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-152806234-4	chr2	152806123	152806323	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009743, intron 2 of 2)	intron (NM_009743, intron 2 of 2)	22266.0	NR_149254	12048.0	Mm.238213	NM_009743	ENSMUSG00000007659	Bcl2l1	Bcl(X)L|Bcl-XL|Bcl2l|BclX|bcl-x|bcl2-L-1	BCL2-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-193200704-4	chr1	193200615	193200815	+	976.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153137, intron 2 of 15)	intron (NM_153137, intron 2 of 15)	831.0	NM_153137	215243.0	Mm.261259	NM_153137	ENSMUSG00000037318	Traf3ip3	6030423D04Rik|AI115021|T3jam	TRAF3 interacting protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-40617888-3	chr9	40617780	40617980	+	923.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER21C|LTR|ERVL	-68084.0	NM_133733	71566.0	Mm.280560	NM_133733	ENSMUSG00000032024	Clmp	9030425E11Rik|ACAM|ASP5|AW557819	CXADR-like membrane protein	protein-coding	1.06037444075642	1.83574156179682	1.66672238676333	0.744412092554259	0.727646513846408	1.64225035833655	0.981477429136303	0.953672523150074	-1.02397105834042	0.463490761473254	0.922012074083581
Merged-chr11-46841438-2	chr11	46841338	46841538	+	628.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178759, intron 7 of 8)	Lx7|LINE|L1	30639.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-96822836-3	chr11	96822724	96822924	+	743.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008686, intron 2 of 4)	intron (NM_008686, intron 2 of 4)	1107.0	NM_001361682	18023.0	Mm.6743	NM_008686	ENSMUSG00000038615	Nfe2l1	AA408798|AW212678|LCR-F1|Lcrf1|NRF1|TCF-11|TCF11	nuclear factor, erythroid derived 2,-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5570165-2	chr19	5570065	5570265	+	766.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001033448, exon 2 of 2)	exon (NM_001033448, exon 2 of 2)	2141.0	NM_001033448	381201.0	Mm.441906	NM_001033448	ENSMUSG00000049562	Ap5b1	Gm962|beta-5	adaptor-related protein complex 5, beta 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-111105974-2	chr10	111105874	111106074	+	552.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-58828.0	NM_001003717	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-107803001-2	chr4	107802894	107803094	+	548.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080926, intron 1 of 18)	CpG	735.0	NM_001080926	16975.0	Mm.442134	NM_053073	ENSMUSG00000028613	Lrp8	4932703M08Rik|AA921429|AI848122|ApoER2|Lr8b	low density lipoprotein receptor-related protein 8, apolipoprotein e receptor	protein-coding	0.778920944893555	1.26658038544698	0.2637823179047	0.257071848921112	0.415456934516307	0.830516277790177	0.265689959595638	0.258248417299207	-1.3883668508001	0.460541610257107	1
Merged-chr9-65021100-2	chr9	65021000	65021200	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021345, intron 1 of 10)	CpG	617.0	NM_021345	57874.0	Mm.308180	NM_021345	ENSMUSG00000033629	Hacd3	4930523M17Rik|AW742319|B-ind1|Hcad3|Hspc121|Ptplad1	3-hydroxyacyl-CoA dehydratase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-42911768-3	chr17	42911682	42911882	+	869.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35358.0	NM_009847	12488.0	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-108047138-4	chr3	108047044	108047244	+	972.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2285.0	NM_001160411	14865.0	Mm.31203	NM_026764	ENSMUSG00000027890	Gstm4	1110004G14Rik|GSTM7-7|Gstb-4|Gstb4	glutathione S-transferase, mu 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-34447310-2	chr7	34447210	34447410	+	840.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-57605.0	NM_025948	67070.0	Mm.276503	NM_025948	ENSMUSG00000066568	Lsm14a	2700023B17Rik|AA407828|AU017544|Tral|mRAP55A	LSM14A mRNA processing body assembly factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-34647827-1	chr5	34647727	34647927	+	540.0	f1_balb.idr	intron (NM_029278, intron 10 of 17)	intron (NM_029278, intron 10 of 17)	-10615.0	NM_026660	68294.0	Mm.34564	NM_026660	ENSMUSG00000001082	Mfsd10	0610009O03Rik|Tetran	major facilitator superfamily domain containing 10	protein-coding	2.22034667858608	2.84235999942974	1.93166698635269	2.46153614135552	2.86728076977738	2.64226919542127	3.17403355320962	1.67947906035134	0.608977121620908	0.460262097019003	0.920832323771703
Merged-chr4-149653321-2	chr4	149653221	149653421	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001164052, exon 18 of 22)	exon (NM_001164052, exon 18 of 22)	2246.0	NR_105990	102465983.0		NR_105990	ENSMUSG00000098580	Mir7023	Gm27912|mmu-mir-7023	microRNA 7023	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-86683335-2	chr6	86683235	86683435	+	558.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025665, intron 1 of 5)	B1_Mus1|SINE|Alu	1156.0	NM_025665	66618.0	Mm.182650	NM_025665	ENSMUSG00000001158	Snrnp27	2610209M04Rik|AI449063|AU022368|Ry1	small nuclear ribonucleoprotein 27 (U4/U6.U5)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-132244205-2	chr7	132244105	132244305	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029935, intron 6 of 7)	intron (NM_029935, intron 6 of 7)	-71459.0	NR_028578	100043682.0	Mm.482794	NR_028578	ENSMUSG00000109270	Gm10584	-	predicted gene 10584	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-85495532-3	chr17	85495426	85495626	+	989.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	122870.0	NR_038084	100043902.0	Mm.150838	NR_015385	ENSMUSG00000093460	Six3os1	D17Mgi26|E130112H22Rik|Rncr1|Six3os	SIX homeobox 3, opposite strand 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-163736117-4	chr2	163736014	163736214	+	963.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001272052, intron 2 of 11)	intron (NM_001272052, intron 2 of 11)	14125.0	NM_007398	11486.0	Mm.388	NM_007398	ENSMUSG00000017697	Ada	-	adenosine deaminase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-86162762-2	chr17	86162661	86162861	+	951.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5024.0	NM_011104	18754.0	Mm.24614	NM_011104	ENSMUSG00000045038	Prkce	5830406C15Rik|PKC[e]|PKCepsilon|Pkce|R75156	protein kinase C, epsilon	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120491392-2	chr8	120491292	120491492	+	745.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_198671, intron 1 of 15)	intron (NM_198671, intron 1 of 15)	2526.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-23136762-4	chr16	23136654	23136854	+	909.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9024.0	NM_145480	106344.0	Mm.386835	NM_145480	ENSMUSG00000022881	Rfc4	A1|AI894123|AU040575|RFC37	replication factor C (activator 1) 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-57212944-2	chr16	57212844	57213044	+	718.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026254, intron 3 of 17)	intron (NM_026254, intron 3 of 17)	-11473.0	NM_001358434	67581.0	Mm.257819	NM_026254	ENSMUSG00000022749	Tbc1d23	4930451A13Rik|AU015720|AU043671|AU043778|D030022P07Rik|W51689	TBC1 domain family, member 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81274449-2	chr10	81274349	81274549	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001282096, exon 18 of 21)	exon (NM_001282096, exon 18 of 21)	2852.0	NR_037218	100526465.0		NR_037218	ENSMUSG00000092781	Mir3057	mir-3057|mmu-mir-3057	microRNA 3057	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-10720447-2	chr16	10720347	10720547	+	568.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177562, intron 21 of 22)	intron (NM_177562, intron 21 of 22)	65089.0	NM_009896	12703.0	Mm.130	NM_009896	ENSMUSG00000038037	Socs1	Cish1|Cish7|JAB|SOCS-1|SSI-1	suppressor of cytokine signaling 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-84784064-4	chr18	84783954	84784154	+	912.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39987.0	NR_155706	102641800.0		NR_155706		Gm38576	-	predicted gene, 38576	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-16085273-4	chr19	16085179	16085379	+	988.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47552.0	NM_008139	14682.0	Mm.439701	NM_008139	ENSMUSG00000024639	Gnaq	1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI	guanine nucleotide binding protein, alpha q polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4623417-2	chr19	4623317	4623517	+	624.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_105952)	TTS (NR_105952)	538.0	NR_105952	102466780.0		NR_105952	ENSMUSG00000098346	Mir6986	Gm27709|mmu-mir-6986	microRNA 6986	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167668649-2	chr2	167668549	167668749	+	697.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7105.0	NM_145538	407243.0	Mm.4863	NM_145538	ENSMUSG00000090213	Tmem189	AI840826|Kua	transmembrane protein 189	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-25843169-4	chr15	25843062	25843262	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001034851)	promoter-TSS (NM_001034851)	-136.0	NM_001034851	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117122930-2	chr11	117122830	117123030	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166507, intron 2 of 16)	intron (NM_001166507, intron 2 of 16)	7758.0	NM_001166506	74136.0	Mm.272312	NM_028777	ENSMUSG00000020823	Sec14l1	1200017E04Rik|2810012L19Rik|Naa-35	SEC14-like lipid binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-21573042-1	chr11	21572942	21573142	+	542.0	f1_c57bl6.idr	intron (NM_145425, intron 1 of 17)	MTC|LTR|ERVL-MaLR	761.0	NM_145425	216560.0	Mm.138090	NM_145425	ENSMUSG00000020319	Wdpcp	AV249152	WD repeat containing planar cell polarity effector	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-66895525-4	chr9	66895424	66895624	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	24181.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-76578054-4	chr11	76577964	76578164	+	807.729187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198894)	promoter-TSS (NM_198894)	-325.0	NM_198894	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	3.35776710135733	3.50483550707206	3.4755843068299	2.87601369855831	3.6399436363003	3.70222998328084	3.41487911778028	3.92481492511535	0.558352589325025	0.291628480017674	0.796128548904676
Merged-chr2-29620137-4	chr2	29620018	29620218	+	886.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054050, intron 1 of 23)	CpG	398.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100754226-2	chr11	100754126	100754326	+	549.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081194, intron 6 of 16)	intron (NM_001081194, intron 6 of 16)	5552.0	NM_001081194	380728.0	Mm.297539	NM_001081194	ENSMUSG00000035355	Kcnh4	BEC2	potassium voltage-gated channel, subfamily H (eag-related), member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-52010716-3	chr12	52010608	52010808	+	640.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	AT_rich|Low_complexity|Low_complexity	-4201.0	NM_001347404	328092.0	Mm.2821	NM_029545	ENSMUSG00000020956	Dtd2	4930578F06Rik|6530401N04Rik|B830049N13Rik	D-tyrosyl-tRNA deacylase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-149247283-4	chr5	149247190	149247390	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17714.0	NM_001308462	11690.0	Mm.19844	NM_009663	ENSMUSG00000060063	Alox5ap	Flap	arachidonate 5-lipoxygenase activating protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-80163525-4	chr9	80163414	80163614	+	988.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1520.0	NM_001039546	17920.0	Mm.4040	NM_008662	ENSMUSG00000033577	Myo6	BC029719|Tlc|sv	myosin VI	protein-coding	2.55697403391061	2.13143591980936	3.07839239894753	2.50871727598082	2.18545799997115	1.95817966800402	2.87979060906278	1.63614131949802	-0.768384893432965	0.366128822031407	0.861036332257394
Merged-chr7-98178910-4	chr7	98178811	98179011	+	958.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007602)	promoter-TSS (NM_007602)	-637.0	NM_007602	12337.0	Mm.326847	NM_007602	ENSMUSG00000035547	Capn5	nCL-3	calpain 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-46818843-7	chr12	46818717	46818917	+	967.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021361)	promoter-TSS (NM_021361)	-42.0	NM_021361	664883.0	Mm.247195	NM_021361	ENSMUSG00000021047	Nova1	9430099M15Rik|G630039L02|Nova-1	neuro-oncological ventral antigen 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-6742301-4	chr17	6742206	6742406	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009510, intron 9 of 12)	intron (NM_009510, intron 9 of 12)	36476.0	NM_183368	83672.0	Mm.442201	NM_031395	ENSMUSG00000041831	Sytl3	A430092N21|Slp3|Slp3-a|Slp3-b|mFLJ00307	synaptotagmin-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24741607-2	chr17	24741507	24741707	+	594.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013759, intron 3 of 4)	B1_Mus2|SINE|Alu	5014.0	NM_001346668	27361.0	Mm.28212	NM_013759	ENSMUSG00000075705	Msrb1	D17Wsu82e|SELX|SelR|Sepr|Sepx1	methionine sulfoxide reductase B1	protein-coding	1.6872320250444	0.944821526631472	0.927320594985327	0.91351281239246	1.79105069678784	1.93597152577698	1.75539221665661	1.58023445420144	2.1187422420943	0.105960705816469	0.507927874471082
Merged-chr17-71133268-4	chr17	71133170	71133370	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50262.0	NM_001357791	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126154931-2	chr7	126154831	126155031	+	743.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_028816, intron 6 of 23)	intron (NM_028816, intron 6 of 23)	45570.0	NM_001311143	74204.0	Mm.235663	NM_028816	ENSMUSG00000000131	Xpo6	2610005L19Rik|AL022631|C230091E20Rik|R75304|Ranbp20|exp6|mKIAA0370	exportin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126917325-2	chr8	126917225	126917425	+	650.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28596.0	NM_024214	67952.0	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-8749584-3	chr17	8749500	8749700	+	711.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290707, intron 1 of 22)	intron (NM_001290707, intron 1 of 22)	-52145.0	NM_011866	23984.0	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-148686449-4	chr2	148686349	148686549	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355689, intron 2 of 5)	intron (NM_001355689, intron 2 of 5)	5329.0	NM_028986	74533.0	Mm.136913	NM_028986	ENSMUSG00000027439	Gzf1	8430437G08Rik|Zfp336|mGZF1	GDNF-inducible zinc finger protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-36188450-3	chr12	36188377	36188577	+	968.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146033, intron 7 of 9)	intron (NM_146033, intron 7 of 9)	29741.0	NM_027699	71156.0	Mm.250837	NM_027699	ENSMUSG00000020545	Lrrc72	1700108M19Rik|4933421E18Rik	leucine rich repeat containing 72	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-119483130-3	chr6	119482974	119483174	+	828.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_133940, exon 1 of 1)	3' UTR (NM_133940, exon 1 of 1)	3406.0	NM_133940	101358.0	Mm.125477	NM_133940	ENSMUSG00000030019	Fbxl14	AW322056|Fbx14l	F-box and leucine-rich repeat protein 14	protein-coding	-0.493259183581153	-0.406114436118287	-0.718672420300972	-0.578032392319043	-0.723090088344168	-0.715713937241661	-0.718142901607639	-0.57565642211378	-1.99877431968345	0.441793204642854	1
Merged-chr11-94211310-4	chr11	94211216	94211416	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009427)	promoter-TSS (NM_009427)	-138.0	NM_009427	22057.0	Mm.259673	NM_009427	ENSMUSG00000037573	Tob1	Tob|Trob	transducer of ErbB-2.1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88748158-2	chr3	88748058	88748258	+	719.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_018804, intron 3 of 3)	URR1A|DNA|hAT-Charlie	24441.0	NM_018804	229521.0	Mm.379376	NM_018804	ENSMUSG00000068923	Syt11	1500004A13Rik|3632445O20Rik|5430404N14Rik|6530420C11Rik|AI851970	synaptotagmin XI	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-26464577-4	chr12	26464474	26464674	+	926.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4641.0	NM_020557	22169.0	Mm.271839	NM_020557	ENSMUSG00000020638	Cmpk2	1200004E04Rik|TDKI|Tyki	cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial	protein-coding	3.29071061077427	3.87087729189742	4.01824182421805	2.81158517477324	3.8605329683708	4.60321513765226	3.98446999887323	4.10101971291282	0.831618117637209	0.0986730235539453	0.488398901237721
Merged-chr15-38663805-2	chr15	38663705	38663905	+	554.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025494, intron 1 of 12)	B1F1|SINE|Alu	1901.0	NM_025494	66335.0	Mm.276618	NM_025494	ENSMUSG00000022295	Atp6v1c1	1700025B18Rik|U13839	ATPase, H+ transporting, lysosomal V1 subunit C1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111430051-4	chr12	111429926	111430126	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289487, intron 13 of 13)	intron (NM_001289487, intron 13 of 13)	12581.0	NM_001289488	74190.0	Mm.248640	NM_028807	ENSMUSG00000021280	Exoc3l4	1200009I06Rik|1600013K19Rik	exocyst complex component 3-like 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36031050-2	chr18	36030950	36031150	+	623.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001167891, intron 5 of 9)	intron (NM_001167891, intron 5 of 9)	66220.0	NR_110349	74002.0	Mm.196944	NM_028707	ENSMUSG00000024347	Psd2	6330404E20Rik|AW125584|EFA6C	pleckstrin and Sec7 domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41375241-2	chr19	41375145	41375345	+	690.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 2 of 16)	intron (NM_031376, intron 2 of 16)	9825.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	0.368516996253953	-0.0219313921797731	0.45797689816366	-0.0283576287774315	0.377155064883604	-0.021103795034578	-0.0247758483900799	-0.0278735548395548	-1.12784246430798	0.627617092616298	1
Merged-chr2-160359095-1	chr2	160358995	160359195	+	590.666687	f0_balb.idr	Intergenic	Intergenic	7970.0	NM_010658	16658.0	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	0.631387700028879	0.296811378545799	0.597092823460818	0.286605518851325	0.63968719054185	0.298114554264022	0.604327792301605	0.79523265602266	0.90706090172955	0.61679446348199	1
Merged-chr5-99218465-9	chr5	99218401	99218601	+	887.1851810000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_145839, exon 14 of 14)	3' UTR (NM_145839, exon 14 of 14)	34426.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-52783164-3	chr12	52783082	52783282	+	836.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198111, intron 1 of 13)	intron (NM_198111, intron 1 of 13)	83799.0	NM_198111	238161.0	Mm.310822	NM_198111	ENSMUSG00000061603	Akap6	AI482140|Akapalpha|Akapbeta|PRKA	A kinase (PRKA) anchor protein 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-34129690-4	chr10	34129644	34129844	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER20C_Mm|LTR|ERVK	-1772.0	NM_175449	215900.0	Mm.34479	NM_175449	ENSMUSG00000046031	Fam26f	A630077B13Rik|Calhm6	family with sequence similarity 26, member F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-120779666-3	chr5	120779501	120779701	+	681.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1942.0	NM_145226	246727.0	Mm.204887	NM_145226	ENSMUSG00000032661	Oas3	Oasl10	2'-5' oligoadenylate synthetase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-50047903-3	chr11	50047795	50047995	+	942.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290750, intron 1 of 7)	intron (NM_001290750, intron 1 of 7)	-21807.0	NR_029769	723845.0		NR_029769	ENSMUSG00000065417	Mir340	Mirn340|mir-340|mmu-mir-340	microRNA 340	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-80706849-3	chr5	80706758	80706958	+	726.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-313713.0	NM_001347367	319387.0	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-47808457-1	chr10	47808357	47808557	+	1000.0	f1_balb.idr	Intergenic	RMER1C|Other|Other	1563708.0	NR_028276	108637.0		NR_028276	ENSMUSG00000096263	Snord14c	Gm23107|Rnu14|U14	small nucleolar RNA, C/D box 14C	snoRNA	-1.58994551673671	-1.55912852307891	-1.56844783632235	-1.57610299769523	-1.18549093183599	-1.55710898902261	-1.56633814807757	-1.57473272746952	1.78703309985663	0.610309988231842	1
Merged-chr14-27356343-4	chr14	27356238	27356438	+	983.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289687, intron 1 of 9)	intron (NM_001289687, intron 1 of 9)	-5051.0	NM_001289688	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-34223205-3	chr13	34223087	34223287	+	619.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033167, intron 3 of 10)	intron (NM_001033167, intron 3 of 10)	60223.0	NM_001110515	69666.0	Mm.24788	NM_001101430	ENSMUSG00000071451	Psmg4	PAC-4|mPAC4	proteasome (prosome, macropain) assembly chaperone 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-109123873-3	chr3	109123758	109123958	+	616.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172685, intron 1 of 9)	intron (NM_172685, intron 1 of 9)	709.0	NM_172685	229731.0	Mm.33574	NM_172685	ENSMUSG00000040322	Slc25a24	2610016M12Rik	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6996155-4	chr19	6996060	6996260	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027351)	promoter-TSS (NR_027351)	29.0	NR_027351	107328.0	Mm.391161	NM_153597	ENSMUSG00000047656	Trpt1	AU079016|AW045591|Tpt1|Tpt1h	tRNA phosphotransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-23079208-2	chr8	23079108	23079308	+	583.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_102385, intron 2 of 45)	intron (NR_102385, intron 2 of 45)	20949.0	NR_102385	11733.0	Mm.334444	NM_031158	ENSMUSG00000031543	Ank1	Ank-1|nb|pale	ankyrin 1, erythroid	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30566293-1	chr7	30566193	30566393	+	554.0	f1_balb.idr	TTS (NM_170760)	TTS (NM_170760)	866.0	NM_145580	101883.0	Mm.333757	NM_145580	ENSMUSG00000036826	Igflr1	F630003I17Rik|Tmem149	IGF-like family receptor 1	protein-coding	-1.10805872493292	-1.08615278712916	-1.09733291238744	-0.570457246721105	-1.1075776593015	-1.08373000734669	-1.09480197709033	-0.936827824343503	-1.63757443811239	0.614325356149311	1
Merged-chr1-60621982-3	chr1	60621883	60622083	+	940.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55218.0	NM_001045513	77300.0	Mm.440325	NM_001045513	ENSMUSG00000026014	Raph1	9430025M21Rik|C730009O10Rik|Lpd	Ras association (RalGDS/AF-6) and pleckstrin homology domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-137994205-3	chr4	137994086	137994286	+	861.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001256195, intron 2 of 34)	CpG-10542	730.0	NM_172703	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	-0.455510580663031	-0.442084286111957	0.144285058799177	-0.449866159437379	-0.454669943515352	0.206113671334953	-0.445504656230891	-0.44927307409359	0.199244183214717	0.941440568903947	1
Merged-chr1-88636875-2	chr1	88636775	88636975	+	695.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C2|LTR|ERVK	65316.0	NM_177305	320982.0	Mm.27968	NM_177305	ENSMUSG00000049866	Arl4c	A630084M22Rik|Arl7|LAK	ADP-ribosylation factor-like 4C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33076439-3	chr16	33076312	33076512	+	764.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172823, intron 6 of 16)	MTD|LTR|ERVL-MaLR	13891.0	NM_172823	239833.0	Mm.131951	NM_172823	ENSMUSG00000022802	Lmln	5330415H22Rik|AI465495	leishmanolysin-like (metallopeptidase M8 family)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117873433-4	chr11	117873333	117873533	+	971.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027919)	promoter-TSS (NM_027919)	93.0	NM_027919	71776.0	Mm.3200	NM_027919	ENSMUSG00000017713	Tha1	1300017K07Rik|GLY1	threonine aldolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139400506-2	chr5	139400406	139400606	+	682.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028469, intron 2 of 4)	MTC|LTR|ERVL-MaLR	-5881.0	NM_177000	319772.0	Mm.440271	NM_177000	ENSMUSG00000044092	C130050O18Rik	-	RIKEN cDNA C130050O18 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167102260-4	chr2	167102146	167102346	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008420, exon 2 of 2)	3' UTR (NM_008420, exon 2 of 2)	36953.0	NR_028540	100217443.0		NR_028540		Snord12	MBII-99	small nucleolar RNA, C/D box 12	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126236180-3	chr7	126236139	126236339	+	797.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131046, intron 2 of 4)	intron (NR_131046, intron 2 of 4)	1365.0	NR_131047	76728.0	Mm.76920	NR_131046	ENSMUSG00000108676	1700123J17Rik	Gm44875	RIKEN cDNA 1700123J17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70520142-2	chr14	70520042	70520242	+	745.666626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_011359)	TTS (NM_011359)	118.0	NM_009755	12153.0	Mm.27757	NM_009755	ENSMUSG00000022098	Bmp1	Pcp|Tld	bone morphogenetic protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-59013157-4	chr17	59012903	59013103	+	808.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_145522)	TTS (NR_145522)	319.0	NM_026497	67993.0	Mm.36507	NM_026497	ENSMUSG00000024228	Nudt12	0610016O18Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52821513-2	chr13	52821413	52821613	+	631.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64308.0	NR_027893	105404.0	Mm.184173	NR_027893		BB123696	-	expressed sequence BB123696	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-94658617-2	chr16	94658517	94658717	+	594.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113389, intron 2 of 11)	(TTTTG)n|Simple_repeat|Simple_repeat	47198.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-153910607-4	chr1	153910505	153910705	+	924.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008131)	TTS (NM_008131)	10676.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28442003-2	chr7	28441903	28442103	+	846.444458	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039192, intron 3 of 6)	B1_Mur3|SINE|Alu	1066.0	NM_001039192	63986.0	Mm.194536	NM_022024	ENSMUSG00000060791	Gmfg	0610039G16Rik|2310057N07Rik|AI324845	glia maturation factor, gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-107036795-3	chr3	107036735	107036935	+	751.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008418, exon 1 of 1)	exon (NM_008418, exon 1 of 1)	673.0	NM_008418	16491.0	Mm.30640	NM_008418	ENSMUSG00000047959	Kcna3	Kca1-3|Kv1.3|Mk-3	potassium voltage-gated channel, shaker-related subfamily, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-78897087-2	chr7	78896987	78897187	+	564.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360709, intron 1 of 3)	intron (NM_001360709, intron 1 of 3)	1029.0	NM_001360709	68048.0	Mm.34109	NM_026531	ENSMUSG00000030609	Aen	2700083B06Rik|Isg20l1	apoptosis enhancing nuclease	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-13355619-2	chr14	13355519	13355719	+	921.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_028052, intron 2 of 5)	intron (NM_028052, intron 2 of 5)	70839.0	NM_028052	72003.0	Mm.317515	NM_028052	ENSMUSG00000056296	Synpr	1500003F20Rik|SPO	synaptoporin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-13687400-3	chr10	13687298	13687498	+	649.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025446, intron 4 of 5)	intron (NM_025446, intron 4 of 5)	-134256.0	NM_001347361	56535.0	Mm.282711	NM_019961	ENSMUSG00000019809	Pex3	1700014F15Rik|2810027F19Rik|2900010N04Rik	peroxisomal biogenesis factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-111805093-1	chr13	111804993	111805193	+	1000.0	f0_c57.idr	intron (NM_011945, intron 1 of 19)	intron (NM_011945, intron 1 of 19)	3900.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-119810840-2	chr13	119810740	119810940	+	719.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13A|LTR|ERVK	19377.0	NM_001001449	380878.0	Mm.327311	NM_001001449	ENSMUSG00000094237	AF067063	-	cDNA sequence AF067063	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-123422703-3	chr8	123422597	123422797	+	650.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_023279)	TTS (NM_023279)	11133.0	NM_023279	22152.0	Mm.40068	NM_023279	ENSMUSG00000062380	Tubb3	3200002H15Rik|M(beta)3|M(beta)6	tubulin, beta 3 class III	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-103019073-4	chr11	103018953	103019153	+	993.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-1906.0	NM_026551	68087.0	Mm.277449	NM_026551	ENSMUSG00000020935	Dcakd	3010024O21Rik|6720485C15Rik|AI849483	dephospho-CoA kinase domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-81942095-1	chr13	81941995	81942195	+	666.0	f1_c57bl6.idr	Intergenic	Intergenic	158848.0	NM_007684	12626.0	Mm.12481	NM_007684	ENSMUSG00000021537	Cetn3	MmCEN3	centrin 3	protein-coding	0.85939047015979	1.75598178414617	1.57203257782401	1.39670789321769	1.45223691702784	0.912510513825926	1.99218356833016	1.0870870524004	0.0135924385490521	0.991697448865209	0.998431161219273
Merged-chr13-113618507-4	chr13	113618414	113618614	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_130796)	promoter-TSS (NM_130796)	50.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-26962916-4	chr2	26962808	26963008	+	998.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207234, intron 1 of 7)	intron (NM_207234, intron 1 of 7)	1478.0	NM_207234	227656.0	Mm.291874	NM_207234	ENSMUSG00000052406	Rexo4	Gm111|Rex4|Xpmc2h	REX4, 3'-5' exonuclease	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-55364536-3	chr4	55364429	55364629	+	728.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009011, intron 1 of 9)	B3|SINE|B2	14487.0	NM_009011	19359.0	Mm.196846	NM_009011	ENSMUSG00000028426	Rad23b	0610007D13Rik|AV001138|HR23B|mHR23B|p58	RAD23 homolog B, nucleotide excision repair protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-77493246-4	chr11	77493140	77493340	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001004144)	promoter-TSS (NM_001004144)	-172.0	NM_001004144	216963.0	Mm.290182	NM_001004144	ENSMUSG00000011877	Git1	Cat-1|p95Cat	G protein-coupled receptor kinase-interactor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-59264199-4	chr3	59264110	59264310	+	981.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177855, intron 35 of 43)	intron (NM_177855, intron 35 of 43)	-1225.0	NM_001357010	70839.0	Mm.422675	NM_027571	ENSMUSG00000036353	P2ry12	2900079B22Rik|4921504D23Rik|P2Y12	purinergic receptor P2Y, G-protein coupled 12	protein-coding	4.61091228846511	4.94954285330807	5.185114103739	4.55276070271559	4.12845172247289	4.9400843381616	4.28762084744732	3.55037203059764	-0.67569663693817	0.0980037935724721	0.486827014331709
Merged-chr9-49049755-2	chr9	49049655	49049855	+	923.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-5826.0	NM_012039	26951.0	Mm.24791	NM_012039	ENSMUSG00000032264	Zw10	6330566F14Rik|MmZw10	zw10 kinetochore protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-154076186-3	chr1	154076085	154076285	+	818.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-125002.0	NM_001204908	100503355.0	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	Gm10178|Gm203	zinc finger protein 648	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-35117062-4	chr18	35116966	35117166	+	950.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-1846.0	NM_009818	12385.0	Mm.18962	NM_009818	ENSMUSG00000037815	Ctnna1	2010010M04Rik|AA517462|AI988031|Catna1	catenin (cadherin associated protein), alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-25293994-2	chr2	25293894	25294094	+	789.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001242940, intron 2 of 3)	intron (NM_001242940, intron 2 of 3)	2774.0	NM_001242940	320354.0	Mm.445875	NM_001242940		Grin1os	E130003G02Rik	glutamate receptor, ionotropic, NMDA1 (zeta 1), opposite strand	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-84888850-1	chr2	84888750	84888950	+	617.0	f0_balb.idr	Intergenic	Intergenic	-2158.0	NM_199223	269295.0	Mm.86447	NM_199223	ENSMUSG00000050896	Rtn4rl2	Ngr2|Ngrh1|Ngrl3	reticulon 4 receptor-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-14893555-3	chr8	14893464	14893664	+	907.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012000, intron 1 of 2)	intron (NM_012000, intron 1 of 2)	5028.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-37638790-4	chr1	37638663	37638863	+	885.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028096, intron 2 of 9)	intron (NM_028096, intron 2 of 9)	81048.0	NM_028096	72097.0	Mm.142607	NM_028096	ENSMUSG00000026090	2010300C02Rik	-	RIKEN cDNA 2010300C02 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-117871090-2	chr6	117870990	117871190	+	843.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001360938, exon 5 of 5)	5' UTR (NM_001360938, exon 5 of 5)	8209.0	NM_001001792	22685.0	Mm.249661	NM_008616	ENSMUSG00000042097	Zfp239	Mok-2|Mok2|Znf239	zinc finger protein 239	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123524255-4	chr5	123524153	123524353	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023232)	promoter-TSS (NM_023232)	-89.0	NM_023232	66593.0	Mm.46716	NM_023232	ENSMUSG00000029433	Diablo	0610041G12Rik|1700006L01Rik|AU040403|Smac	diablo, IAP-binding mitochondrial protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-46857028-3	chr12	46856936	46857136	+	740.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	-38261.0	NM_021361	664883.0	Mm.247195	NM_021361	ENSMUSG00000021047	Nova1	9430099M15Rik|G630039L02|Nova-1	neuro-oncological ventral antigen 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-97897923-2	chr16	97897823	97898023	+	576.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_174847, intron 2 of 13)	intron (NM_174847, intron 2 of 13)	-20632.0	NR_105929	102465581.0		NR_105929	ENSMUSG00000105138	Mir6964	mmu-mir-6964	microRNA 6964	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-39736711-1	chr18	39736611	39736811	+	574.0	f1_balb.idr	Intergenic	L1_Mus1|LINE|L1	-36786.0	NM_011033	18459.0	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35808139-4	chr17	35808050	35808250	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13563.0	NM_133662	15937.0	Mm.25613	NM_133662	ENSMUSG00000003541	Ier3	AI663993|IEX-1|cI-3|gly96	immediate early response 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44852943-2	chr7	44852843	44853043	+	842.8333130000001	f1_balb.idr|f1_c57bl6.idr	exon (NM_026270, exon 2 of 5)	exon (NM_026270, exon 2 of 5)	2936.0	NM_001253920	67605.0	Mm.148007	NM_026270	ENSMUSG00000011096	Akt1s1	1110012J22Rik|AI227026|Lobe|Lobel|PRAS40	AKT1 substrate 1 (proline-rich)	protein-coding	0.746518344822672	0.864759753917381	0.471167911101829	0.463929997363874	1.2441876806912	0.696816947245419	1.30727917867905	0.465198448646235	1.77976077256733	0.287678086714164	1
Merged-chr13-23401167-3	chr13	23401080	23401280	+	847.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22686.0	NM_013924	30946.0	Mm.292094	NM_013924	ENSMUSG00000036376	Abt1	-	activator of basal transcription 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-110094512-4	chr5	110094396	110094596	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5473.0	NM_207279	403178.0	Mm.297057	NM_207279	ENSMUSG00000064247	Plcxd1	A330045H12Rik|Gm576	phosphatidylinositol-specific phospholipase C, X domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-76763518-2	chr16	76763418	76763618	+	600.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_155453, intron 1 of 3)	intron (NR_155453, intron 1 of 3)	15574.0	NR_155453	102632814.0		NR_155453	ENSMUSG00000109333	Gm30790	Gm45028	predicted gene, 30790	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-130842552-4	chr5	130842434	130842634	+	912.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	393742.0	NM_021371	140904.0	Mm.40875	NM_021371	ENSMUSG00000060371	Caln1	9630012C17Rik|Cabp8|MNCb-0849	calneuron 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-142819596-2	chr5	142819496	142819696	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2209.0	NM_001122730	231861.0	Mm.354649	NM_178242	ENSMUSG00000039477	Tnrc18	BC025631|EG381742|Zfp469	trinucleotide repeat containing 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99725504-4	chr15	99725392	99725592	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183256)	promoter-TSS (NM_183256)	-126.0	NM_183256	66379.0	Mm.5265	NM_183256	ENSMUSG00000023020	Cox14	2310016M24Rik|AA959804	cytochrome c oxidase assembly protein 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-142399493-4	chr7	142399397	142399597	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11627.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32085577-2	chr2	32085477	32085677	+	716.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_151493)	promoter-TSS (NR_151493)	-908.0	NR_151493	241303.0	Mm.250441	NM_175511	ENSMUSG00000050592	Fam78a	A130092J06Rik	family with sequence similarity 78, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-32778017-1	chr12	32777917	32778117	+	679.0	f1_c57bl6.idr	Intergenic	L1VL4|LINE|L1	-42318.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	0.969098798019209	1.97342722548127	1.22672867932521	1.0437217694967	0.470709434960866	0.516549722735275	0.502056726978506	0.489377512331898	-4.90817190433327	0.00240585222271328	0.0384872199574852
Merged-chr4-95783680-2	chr4	95783580	95783780	+	819.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029347, intron 8 of 10)	intron (NM_029347, intron 8 of 10)	183355.0	NR_045777	319247.0	Mm.473527	NM_175680	ENSMUSG00000044125	9530080O11Rik	-	RIKEN cDNA 9530080O11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-97336833-4	chr7	97336745	97336945	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039039, intron 1 of 1)	MTE2a|LTR|ERVL-MaLR	4522.0	NM_001039039	622320.0	Mm.334029	NM_001039039	ENSMUSG00000044952	Kctd21	EG622320	potassium channel tetramerisation domain containing 21	protein-coding	4.95076571248916	4.65632266946697	4.75632429334317	4.20725205281709	5.79095634465066	5.75050208176535	4.96283264131963	4.82421127179068	0.866824127164799	0.0148724921757029	0.144369062398126
Merged-chr2-29977551-2	chr2	29977451	29977651	+	733.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177668, intron 1 of 55)	B2_Mm2|SINE|B2	11991.0	NM_001309460	20740.0	Mm.204969	NM_001076554	ENSMUSG00000057738	Sptan1	2610027H02Rik|Spna-2|Spna2	spectrin alpha, non-erythrocytic 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-58873156-4	chr1	58873061	58873261	+	798.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVB4_1B-I_MM-int|LTR|ERVK	70659.0	NM_001277926	12370.0	Mm.336851	NM_009812	ENSMUSG00000026029	Casp8	CASP-8|FLICE|MACH|Mch5	caspase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-84217159-3	chr12	84217047	84217247	+	787.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163501, intron 1 of 12)	intron (NM_001163501, intron 1 of 12)	1734.0	NM_001163501	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85963155-2	chr12	85963055	85963255	+	816.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347395, intron 29 of 32)	intron (NM_001347395, intron 29 of 32)	115886.0	NM_009368	21809.0	Mm.3992	NM_009368	ENSMUSG00000021253	Tgfb3	TGF-beta-3|Tgfb-3	transforming growth factor, beta 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-87043534-2	chr6	87043434	87043634	+	995.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013528, intron 1 of 18)	intron (NM_013528, intron 1 of 18)	688.0	NM_013528	14583.0	Mm.19893	NM_013528	ENSMUSG00000029992	Gfpt1	2810423A18Rik|AI324119|AI449986|GFA|GFAT|GFAT1|GFAT1m|Gfpt	glutamine fructose-6-phosphate transaminase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-43475668-2	chr1	43475568	43475768	+	630.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010879, intron 1 of 4)	intron (NM_010879, intron 1 of 4)	29917.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-125387794-4	chr10	125387713	125387913	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58850.0	NM_001358496	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-119026513-3	chr12	119026367	119026567	+	631.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-60046.0	NM_029961	77706.0	Mm.261496	NM_029961	ENSMUSG00000072791	Abcb5	9230106F14Rik	ATP-binding cassette, sub-family B (MDR/TAP), member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-64531337-4	chr17	64531246	64531446	+	948.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045899, intron 1 of 3)	intron (NR_045899, intron 1 of 3)	24244.0	NR_045899	100043582.0	Mm.11170	NR_045899	ENSMUSG00000073377	AU016765	-	expressed sequence AU016765	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88607597-4	chr3	88607504	88607704	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8603.0	NM_001198911	16800.0	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-36613948-4	chr8	36613814	36614014	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015802)	promoter-TSS (NM_015802)	29.0	NM_015802	50768.0	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	4.63148273212553	3.52474646601717	4.26994207454468	4.03444784466267	4.7299657122406	3.76424589212189	4.65563988283009	4.87010154183599	0.502278352202486	0.250011824120998	0.748413639172589
Merged-chr3-135424482-2	chr3	135424382	135424582	+	633.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1049.0	NM_025902	67006.0	Mm.269993	NM_025902	ENSMUSG00000028165	Cisd2	1500009M05Rik|1500026J14Rik|1500031D15Rik|AI848398|B630006A20Rik|Miner1|Naf-1|Noxp70|Zcd2	CDGSH iron sulfur domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-36923175-2	chr19	36923075	36923275	+	562.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2904.0	NM_001080706	107182.0	Mm.295062	NM_001080706	ENSMUSG00000040565	Btaf1	AI414500|AI447930|E430027O22Rik|TAF170	B-TFIID TATA-box binding protein associated factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-88068955-4	chr6	88068851	88069051	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB2|LINE|L1	-15522.0	NM_133933	103963.0	Mm.188544	NM_133933	ENSMUSG00000030062	Rpn1	AU018702|D6Wsu137e|Rpn-1	ribophorin I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129549940-4	chr2	129549852	129550052	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13350.0	NM_177653	228592.0	Mm.452175	NM_177653	ENSMUSG00000043727	F830045P16Rik	Sirpb3	RIKEN cDNA F830045P16 gene	protein-coding	2.14646156870545	1.36285948680858	2.08324180023116	2.45220853798144	2.16396749932392	2.16949659643876	1.95265656296971	2.70138667165179	0.49776542533983	0.59191907963644	0.97015200361199
Merged-chr4-119126076-4	chr4	119125974	119126174	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011400, intron 2 of 9)	intron (NM_011400, intron 2 of 9)	17329.0	NM_011400	20525.0	Mm.21002	NM_011400	ENSMUSG00000028645	Slc2a1	Glut-1|Glut1	solute carrier family 2 (facilitated glucose transporter), member 1	protein-coding	3.40440416776076	4.28027449575949	4.10079239767967	3.43725220071669	3.03264919230145	3.18932017531612	2.6645551492801	3.28615348848121	-1.22695742004094	0.0285185426135448	0.228924269141822
Merged-chr6-42353391-4	chr6	42353295	42353495	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289618, intron 4 of 9)	intron (NM_001289618, intron 4 of 9)	3567.0	NM_001289618	22793.0	Mm.282303	NM_011777	ENSMUSG00000029860	Zyx	9530098H06Rik|R75157	zyxin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-90438684-3	chr3	90438572	90438772	+	693.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6A|LTR|ERVK	-5036.0	NM_178876	229543.0	Mm.268564	NM_145540	ENSMUSG00000027933	Ints3	C77668	integrator complex subunit 3	protein-coding	1.04766459118599	1.19309373378333	1.14664828559975	1.32193275370297	0.654152528477914	1.05863602573353	1.02120968058297	0.666184107989341	-1.65679536105243	0.25910496438533	0.75927260363863
Merged-chr8-71676639-4	chr8	71676532	71676732	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001190830, intron 1 of 23)	CpG	249.0	NM_010589	16453.0	Mm.249645	NM_010589	ENSMUSG00000031805	Jak3	fae|wil	Janus kinase 3	protein-coding	3.07488452885671	2.38634046104352	2.6838777339365	2.88516895869453	2.13985546770131	3.17700154625081	2.59128001929464	1.44359636267554	-0.574917649502513	0.488518495682641	0.933453007555711
Merged-chr7-99148596-2	chr7	99148496	99148696	+	741.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7452.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	-2.18361151404719	-2.02201993626881	-2.16403530460334	-2.1710062446989	-2.18164157430194	-2.15370992785044	-2.16211418110791	-2.16975844975469	-0.683654500252594	0.846597994014493	1
Merged-chr19-55383427-3	chr19	55383326	55383526	+	917.6555179999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360432, intron 4 of 7)	intron (NM_001360432, intron 4 of 7)	67369.0	NM_001293686	53611.0	Mm.258637	NM_016862	ENSMUSG00000024983	Vti1a	1110014F16Rik|1110018K19Rik|4921537J05Rik|MVti1|MVti1a|Vti1|Vti1-rp2	vesicle transport through interaction with t-SNAREs 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166447489-4	chr2	166447393	166447593	+	956.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015558)	promoter-TSS (NR_015558)	42.0	NR_015558	319684.0	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127554809-2	chr10	127554709	127554909	+	803.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 56 of 88)	intron (NM_008512, intron 56 of 88)	-20250.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-59476818-4	chr9	59476716	59476916	+	942.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_045640)	TTS (NR_045640)	4925.0	NR_045640	100504377.0	Mm.446631	NR_045640		Gm20199	-	predicted gene, 20199	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-5057403-2	chr7	5057306	5057506	+	707.25	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_146178, exon 1 of 5)	5' UTR (NM_146178, exon 1 of 5)	680.0	NM_146178	232821.0	Mm.482157	NM_146178	ENSMUSG00000035228	Ccdc106	BC018462	coiled-coil domain containing 106	protein-coding	0.0538074172789366	-0.102329706116931	-0.285781386637121	0.2077179842719	-0.292739136288292	-0.0979621458352735	-0.284952328770045	-0.288169139254053	-2.59398619429387	0.265058139832978	1
Merged-chr17-78265377-4	chr17	78265291	78265491	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015800, intron 2 of 16)	intron (NM_015800, intron 2 of 16)	65143.0	NM_015800	50766.0	Mm.311912	NM_015800	ENSMUSG00000024074	Crim1	AU015004	cysteine rich transmembrane BMP regulator 1 (chordin like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-58496786-4	chr2	58496703	58496903	+	918.025024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355048, intron 3 of 10)	intron (NM_001355048, intron 3 of 10)	64607.0	NM_001355049	11477.0	Mm.689	NM_007394	ENSMUSG00000026836	Acvr1	ALK2|ActR-I|ActRIA|Acvr|Acvrlk2|Alk-2|Alk8|D330013D15Rik|SKR1|Tsk7L	activin A receptor, type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-70259818-2	chr9	70259708	70259908	+	689.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_181072, intron 1 of 27)	intron (NM_181072, intron 1 of 27)	52458.0	NM_181072	71602.0	Mm.249311	NM_181072	ENSMUSG00000032220	Myo1e	2310020N23Rik|9130023P14Rik|AA407778|myosin-1e|myr 3	myosin IE	protein-coding	-0.221417602490236	-0.473804923622416	-0.47763332546157	0.2300630452499	-0.484744497768122	-0.472941097278265	-0.476789474243583	-0.314590732072627	-2.57860806451489	0.313615260038376	1
Merged-chr17-35132983-2	chr17	35132883	35133083	+	618.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1231.0	NM_018816	55938.0	Mm.2161	NM_018816	ENSMUSG00000024391	Apom	1190010O19Rik|G3a|NG20	apolipoprotein M	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126704755-4	chr7	126704658	126704858	+	998.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009898)	promoter-TSS (NM_009898)	58.0	NM_009898	12721.0	Mm.290482	NM_009898	ENSMUSG00000030707	Coro1a	Clabp|Lmb3|TACO|p57	coronin, actin binding protein 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101468859-2	chr11	101468759	101468959	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009708, intron 1 of 4)	intron (NM_009708, intron 1 of 4)	684.0	NM_009708	11858.0	Mm.378883	NM_009708	ENSMUSG00000001313	Rnd2	Arhn|Rohn|rho7	Rho family GTPase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-121247167-4	chr6	121247053	121247253	+	820.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011909, intron 1 of 10)	intron (NM_011909, intron 1 of 10)	1247.0	NM_011909	24110.0	Mm.326911	NM_011909	ENSMUSG00000030107	Usp18	1110058H21Rik|AW047653|UBP43|Ubp15	ubiquitin specific peptidase 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-72366176-4	chr2	72366082	72366282	+	983.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023057, intron 4 of 19)	intron (NM_023057, intron 4 of 19)	80481.0	NM_178084	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-109014904-4	chr8	109014779	109014979	+	819.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-60343.0	NR_126329	628686.0	Mm.203332	NR_126329	ENSMUSG00000097393	D030068K23Rik	-	RIKEN cDNA D030068K23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-58806199-2	chr15	58806099	58806299	+	578.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175212, intron 1 of 6)	intron (NM_175212, intron 1 of 6)	17228.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-73441182-3	chr15	73441055	73441255	+	636.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17964.0	NM_001358045	14083.0	Mm.254494	NM_007982	ENSMUSG00000022607	Ptk2	FADK 1|FAK|FRNK|Fadk|p125FAK	PTK2 protein tyrosine kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-25354928-4	chr15	25354838	25355038	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58826.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141867702-4	chr4	141867601	141867801	+	919.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025994, intron 1 of 3)	intron (NM_025994, intron 1 of 3)	7219.0	NM_025994	27984.0	Mm.395598	NM_025994	ENSMUSG00000040659	Efhd2	2600015J22Rik|AA408606|D4Wsu27e	EF hand domain containing 2	protein-coding	4.57004960328025	4.08043883721019	4.53797497240645	5.13102901730696	3.79584458199172	4.03161586037163	3.3013981967514	5.18014115419264	-0.455639802122007	0.347846097248266	0.84779281761056
Merged-chr3-129622373-2	chr3	129622274	129622474	+	600.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_130450, intron 3 of 4)	B3|SINE|B2	-89986.0	NR_153368	102639747.0	Mm.393257	NR_153368		Gm35986	-	predicted gene, 35986	ncRNA	1.36919825192477	0.769670837510375	1.50585718633952	0.936215790243468	1.04760007343523	0.994102501452033	1.71282216893033	0.940198193553706	0.142354300948275	0.915963518203729	0.998431161219273
Merged-chr11-110167859-2	chr11	110167800	110168000	+	921.974976	f1_balb.idr|f1_c57bl6.idr	intron (NM_147220, intron 1 of 38)	intron (NM_147220, intron 1 of 38)	253.0	NM_147220	217262.0	Mm.291459	NM_147220	ENSMUSG00000041797	Abca9	D630040K07Rik	ATP-binding cassette, sub-family A (ABC1), member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-72799971-2	chr1	72799871	72800071	+	630.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24509.0	NM_008342	16008.0	Mm.141936	NM_008342	ENSMUSG00000039323	Igfbp2	AI255832|IBP-2|Igfbp-2|mIGFBP-2	insulin-like growth factor binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-95557451-4	chr4	95557352	95557552	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113412)	promoter-TSS (NM_001113412)	-55.0	NM_001113412	75578.0	Mm.276098	NM_029347	ENSMUSG00000028573	Fggy	2310009E04Rik	FGGY carbohydrate kinase domain containing	protein-coding	0.181538523703642	0.622087467055003	1.07425637807575	0.193484247400798	0.183330644120415	0.211662426505164	1.18303433569123	0.194727817405895	-0.19478482836078	0.92337592977929	1
Merged-chr6-86004453-4	chr6	86004314	86004514	+	780.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_155305)	promoter-TSS (NR_155305)	61.0	NR_155305	75355.0	Mm.142685	NR_155305	ENSMUSG00000106791	4930553P18Rik	-	RIKEN cDNA 4930553P18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129905020-1	chr2	129904920	129905120	+	616.0	f1_c57bl6.idr	Intergenic	Intergenic	-103561.0	NR_029452	654409.0	Mm.305555	NR_029452		Stk35os1	4932416H05Rik	serine/threonine kinase 35, opposite strand 1	ncRNA	3.47980035892188	3.74244347888418	2.94809321588474	4.04656075826895	2.84551112140396	3.6073529401203	3.57196514298054	3.38432632237035	-0.36694319937103	0.513086889324236	0.946012165471598
Merged-chr7-95133318-2	chr7	95133216	95133416	+	747.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1037928.0	NM_001310762	23966.0	Mm.254610	NM_011858	ENSMUSG00000048078	Tenm4	Doc4|ELM2|Odz4|R75022|Ten-m4|l(7)-3Rn|l7Rn3|mKIAA1302	teneurin transmembrane protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-100408744-1	chr3	100408644	100408844	+	552.0	f1_balb.idr	Intergenic	RMER1A|Other|Other	-17661.0	NR_040543	73806.0	Mm.396549	NR_040543	ENSMUSG00000086923	4930406D18Rik	-	RIKEN cDNA 4930406D18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-100038662-4	chr15	100038576	100038776	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159361)	promoter-TSS (NM_001159361)	12.0	NM_001159361	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-32809397-2	chr11	32809297	32809497	+	757.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15197.0	NM_027050	69351.0	Mm.65488	NM_027050	ENSMUSG00000020270	Smim23	1700008A04Rik	small integral membrane protein 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-37230824-3	chr9	37230730	37230930	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_020258, exon 18 of 18)	3' UTR (NM_020258, exon 18 of 18)	22514.0	NM_001310096	66279.0	Mm.41451	NM_025464	ENSMUSG00000032121	Tmem218	1810021J13Rik|AV004931	transmembrane protein 218	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-31069982-2	chr17	31069882	31070082	+	932.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009593, intron 2 of 14)	intron (NM_009593, intron 2 of 14)	12288.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-50939025-2	chr6	50938925	50939125	+	555.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	162910.0	NR_045984	319981.0	Mm.131454	NR_045984	ENSMUSG00000107667	C530044C16Rik	-	RIKEN cDNA C530044C16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-121392927-2	chr5	121392827	121393027	+	981.1666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5055.0	NM_172722	231713.0	Mm.33919	NM_172722	ENSMUSG00000042719	Naa25	4833422K13Rik|A630046C11|AI450868|C330023M02Rik|Mdm20	N(alpha)-acetyltransferase 25, NatB auxiliary subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-125428636-4	chr1	125428517	125428717	+	857.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205386, intron 2 of 12)	intron (NM_001205386, intron 2 of 12)	7110.0	NM_001205386	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-57712832-4	chr10	57712712	57712912	+	959.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008863, intron 4 of 5)	intron (NM_008863, intron 4 of 5)	61831.0	NM_001190402	18768.0	Mm.262135	NM_008863	ENSMUSG00000019876	Pkib	Pkibeta|Prkacn2	protein kinase inhibitor beta, cAMP dependent, testis specific	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-151861170-6	chr4	151861059	151861259	+	946.7777710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081557, intron 1 of 23)	CpG	609.0	NM_001081557	100072.0	Mm.318846	NM_001081557	ENSMUSG00000014592	Camta1	1810059M14Rik|2310058O09Rik|AI316882|AW987475|mKIAA0833	calmodulin binding transcription activator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-114140894-1	chr2	114140794	114140994	+	662.0	f0_balb.idr	exon (NM_009702, exon 16 of 35)	exon (NM_009702, exon 16 of 35)	9676.0	NR_105968	102465982.0		NR_105968	ENSMUSG00000098464	Mir7002	Gm27429|mmu-mir-7002	microRNA 7002	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-5065777-4	chr11	5065664	5065864	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001190406)	promoter-TSS (NM_001190406)	-437.0	NM_001190406	78926.0	Mm.44591	NM_030228	ENSMUSG00000034201	Gas2l1	4930500E24Rik|D0Jmb1|Gar22|TU-71.1	growth arrest-specific 2 like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128125156-2	chr2	128125052	128125252	+	653.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207680)	promoter-TSS (NM_207680)	-886.0	NM_207681	12125.0	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-74217855-2	chr18	74217755	74217955	+	732.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_028868, exon 4 of 15)	exon (NM_028868, exon 4 of 15)	1643.0	NM_028868	74322.0	Mm.17537	NM_028868	ENSMUSG00000024560	Cxxc1	2410002I16Rik|5830420C16Rik|AI426635|Cfp1|Cgbp|PHF18	CXXC finger 1 (PHD domain)	protein-coding	-1.05427326193291	-1.03570194074565	-0.879154215749717	-1.05124488368308	-0.687671082709643	-1.03332322628081	-0.875031633807149	-1.05092502691648	1.58131202794897	0.597958077664382	1
Merged-chr6-27091744-2	chr6	27091644	27091844	+	635.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17B|LTR|ERVK	845006.0	NR_030420	735266.0		NR_030420	ENSMUSG00000076067	Mir592	Mirn592|mir-592|mmu-mir-592	microRNA 592	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-157597371-4	chr2	157597275	157597475	+	752.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR17|LTR|ERVK	-31014.0	NM_016916	53619.0	Mm.480461	NM_016916	ENSMUSG00000067787	Blcap	AI462828|Bc10	bladder cancer associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-34372159-4	chr2	34372075	34372275	+	928.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016768)	promoter-TSS (NM_016768)	-130.0	NM_016768	18516.0	Mm.239941	NM_016768	ENSMUSG00000038718	Pbx3	-	pre B cell leukemia homeobox 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-60759227-2	chr13	60759144	60759344	+	636.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 25 of 26)	intron (NM_134062, intron 25 of 26)	27120.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	4.00388874801064	4.25908231737444	1.98771100843571	3.75337314519206	3.09425309266319	2.88689689894358	3.6147455865904	3.1625211442848	-0.786659331297773	0.222273228470575	0.713693361781433
Merged-chr6-5292942-3	chr6	5292845	5293045	+	771.305542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183308, intron 1 of 8)	intron (NM_183308, intron 1 of 8)	5428.0	NM_183308	330260.0	Mm.126984	NM_183308	ENSMUSG00000032667	Pon2	6330405I24Rik|AI481612	paraoxonase 2	protein-coding	1.83297232885964	1.78756802831808	2.09797916519364	2.30104864310561	1.30957012028711	1.18388457855822	1.8816709319446	1.94209530793968	-1.16073941251291	0.271898611519983	0.775341509331591
Merged-chr11-84831301-2	chr11	84831201	84831401	+	741.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_046281)	TTS (NR_046281)	2123.0	NR_046281	74995.0	Mm.84413	NR_046281	ENSMUSG00000086799	4930502E09Rik	-	RIKEN cDNA 4930502E09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129784285-1	chr4	129784185	129784385	+	541.0	f1_balb.idr	Intergenic	B2_Mm1t|SINE|B2	-36194.0	NM_008974	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	0.106839986179222	0.464691415535556	-0.146691036865372	-0.150380912224406	0.408245011876682	-0.1408251345422	-0.145635748273941	-0.1497364768237	-0.581136567852839	0.805156423301016	1
Merged-chr19-55900072-2	chr19	55899972	55900172	+	546.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001142924, intron 1 of 11)	intron (NM_001142924, intron 1 of 11)	4751.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-146750468-2	chr5	146750368	146750568	+	785.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011669, intron 6 of 8)	MER68|LTR|ERVL	44488.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-86694690-3	chr6	86694600	86694800	+	814.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011818, intron 13 of 13)	intron (NM_011818, intron 13 of 13)	-10209.0	NM_025665	66618.0	Mm.182650	NM_025665	ENSMUSG00000001158	Snrnp27	2610209M04Rik|AI449063|AU022368|Ry1	small nuclear ribonucleoprotein 27 (U4/U6.U5)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-110392384-4	chr13	110392280	110392480	+	856.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2664.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-25604529-2	chr15	25604429	25604629	+	608.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-18021.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94344735-3	chr10	94344586	94344786	+	929.1222529999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 1 of 4)	intron (NM_001359762, intron 1 of 4)	32737.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	2.97759309156885	2.94244602828983	2.6438187531498	2.84654811902971	2.87069669018584	2.64087415208051	1.43126059200203	1.39295969406355	-1.16266909650558	0.190775909761074	0.669546561020494
Merged-chr2-181658389-2	chr2	181658289	181658489	+	740.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13251.0	NM_009236	20672.0	Mm.264904	NM_009236	ENSMUSG00000046470	Sox18	AI385749|Ra|Ragl	SRY (sex determining region Y)-box 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-29240227-2	chr6	29240127	29240327	+	580.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-23863.0	NM_001302934	23917.0	Mm.260707	NM_011829	ENSMUSG00000003500	Impdh1	B930086D20Rik|IMPDH-I	inosine monophosphate dehydrogenase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6976737-2	chr19	6976637	6976837	+	986.1999509999999	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001360288)	TTS (NM_001360288)	1689.0	NM_008889	18938.0	Mm.140	NM_008889	ENSMUSG00000056612	Ppp1r14b	AOM172|PHI-1|PLCB3N|Png	protein phosphatase 1, regulatory (inhibitor) subunit 14B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-150099987-4	chr1	150099883	150100083	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015466)	promoter-TSS (NR_015466)	-48.0	NM_011198	19225.0	Mm.292547	NM_011198	ENSMUSG00000032487	Ptgs2	COX2|Cox-2|PES-2|PGHS-2|PHS II|PHS-2|Pghs2|TIS10|gripghs	prostaglandin-endoperoxide synthase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-84855299-4	chr12	84855213	84855413	+	938.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013589, intron 2 of 34)	intron (NM_013589, intron 2 of 34)	-20489.0	NR_028577	100303738.0	Mm.479389	NR_028577	ENSMUSG00000092130	D030025P21Rik	-	RIKEN cDNA D030025P21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129315069-4	chr2	129314964	129315164	+	911.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5092.0	NM_010554	16175.0	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97402723-4	chr6	97402643	97402843	+	882.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 5 of 23)	intron (NM_145148, intron 5 of 23)	56543.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91512572-4	chr16	91512480	91512680	+	776.395813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14964.0	NR_105786	102465190.0		NR_105786	ENSMUSG00000099308	Mir6367	Gm27467|mmu-mir-6367	microRNA 6367	ncRNA	1.85494741749216	1.44087176047043	1.40219719566152	2.15735948451235	2.14553031384864	2.32003338609535	1.90447860156062	1.37687796966532	0.634479227216617	0.538776389741598	0.954366012419246
Merged-chr7-140955976-4	chr7	140955852	140956052	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030694)	promoter-TSS (NM_030694)	9.0	NM_030694	80876.0	Mm.379266	NM_030694	ENSMUSG00000060591	Ifitm2	DSPA2c|Ifitm3l|fragilis3|mil-3	interferon induced transmembrane protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-61322126-2	chr18	61322026	61322226	+	550.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133249, intron 2 of 11)	L1_Mus3|LINE|L1	75774.0	NR_029879	723889.0		NR_029879	ENSMUSG00000105200	Mir378a	Mir378|Mirn378|mmu-mir-378|mmu-mir-378a	microRNA 378a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-59230472-2	chr10	59230372	59230572	+	836.083313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8550.0	NM_172939	268301.0	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129562577-3	chr2	129562472	129562672	+	922.599976	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25970.0	NM_177653	228592.0	Mm.452175	NM_177653	ENSMUSG00000043727	F830045P16Rik	Sirpb3	RIKEN cDNA F830045P16 gene	protein-coding	-1.12007123334057	-1.23751541721827	-0.799610455274731	-1.25644006657821	-1.26447365240828	-1.23526386158843	-1.24555334641492	-1.25491236783429	-2.40709883940037	0.4691507995815	1
Merged-chr7-120843557-1	chr7	120843457	120843657	+	696.0	f0_balb.idr	promoter-TSS (NM_001267710)	promoter-TSS (NM_001267710)	-43.0	NM_001267710	13631.0	Mm.25997	NM_007908	ENSMUSG00000035064	Eef2k	C86191|eEF-2K	eukaryotic elongation factor-2 kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-108727623-2	chr3	108727523	108727723	+	590.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-5324.0	NM_029522	76123.0	Mm.226941	NM_029522	ENSMUSG00000027883	Gpsm2	6230410J09Rik|LGN|Pins	G-protein signalling modulator 2 (AGS3-like, C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-75168694-4	chr14	75168620	75168820	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008879, intron 1 of 16)	MLTR11B|LTR|ERVK	32295.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33920662-2	chr16	33920562	33920762	+	942.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 10 of 14)	intron (NM_001145884, intron 10 of 14)	46376.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-79697038-1	chr1	79696938	79697138	+	550.0	f1_c57bl6.idr	Intergenic	Intergenic	-25066.0	NM_183027	252903.0	Mm.32409	NM_183027	ENSMUSG00000054702	Ap1s3	1190009B22|Jr2|[s]3A	adaptor-related protein complex AP-1, sigma 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-183779812-2	chr1	183779712	183779912	+	585.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_151520, intron 1 of 2)	MIRb|SINE|MIR	30835.0	NR_151520	102637191.0	Mm.417076	NR_151520	ENSMUSG00000103305	Gm34068	-	predicted gene, 34068	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-64377333-2	chr1	64377233	64377433	+	757.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-155471.0	NM_009952	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-151339981-2	chr1	151339881	151340081	+	706.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4505.0	NM_001359262	117198.0	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-109706454-2	chr8	109706354	109706554	+	700.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286393, intron 2 of 7)	intron (NM_001286393, intron 2 of 7)	435.0	NM_029468	75871.0	Mm.180410	NM_029468	ENSMUSG00000031728	Zfp821	4930566A11Rik|Znf821	zinc finger protein 821	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90395166-4	chr2	90395066	90395266	+	926.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F3|LINE|L1	-5474.0	NM_146263	258330.0	Mm.330392	NM_146263	ENSMUSG00000082980	Olfr1274-ps	GA_x5J8B7W2BV0-3116-4045|MOR228-4|MOR228-5|Olfr1274	olfactory receptor 1274, pseudogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-9018006-2	chr19	9017906	9018106	+	787.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_009643, exon 5 of 5)	exon (NM_009643, exon 5 of 5)	28722.0	NM_001286518	66395.0	Mm.203866	NM_009643	ENSMUSG00000069833	Ahnak	DY6	AHNAK nucleoprotein (desmoyokin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-84839596-1	chr2	84839496	84839696	+	545.0	f1_balb.idr	promoter-TSS (NM_024497)	promoter-TSS (NM_024497)	188.0	NM_001081349	72401.0	Mm.22716	NM_024497	ENSMUSG00000027075	Slc43a1	2610016F07Rik|AA986141|Lat3|PB39|Pov1|R00504	solute carrier family 43, member 1	protein-coding	-0.802593673557486	-0.793094718163527	-0.341243695287107	-0.798614554876962	-0.802002397560642	-0.791090896558683	-0.332078011335404	-0.79819523297655	0.040958530317021	0.989184000390448	1
Merged-chr17-5496908-2	chr17	5496808	5497008	+	672.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	MTD|LTR|ERVL-MaLR	4308.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126396873-4	chr7	126396764	126396964	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010900)	promoter-TSS (NM_010900)	-127.0	NM_010900	18020.0	Mm.1389	NM_010900	ENSMUSG00000030722	Nfatc2ip	D7Ertd304e|NIP45	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-157399823-3	chr2	157399727	157399927	+	808.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24466.0	NM_009271	20779.0	Mm.22845	NM_009271	ENSMUSG00000027646	Src	AW259666|pp60c-src	Rous sarcoma oncogene	protein-coding	1.77734037550581	1.13724356940417	1.33789170617238	1.87367171353846	1.79206435207284	1.8873768381917	2.24000369734652	1.63795593071784	1.02451738100464	0.343555538062967	0.844321865153519
Merged-chr8-95434957-4	chr8	95434845	95435045	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008187)	promoter-TSS (NM_008187)	-76.0	NM_008187	14894.0	Mm.2080	NM_008187	ENSMUSG00000031796	Cfap20	2600014O15Rik|AL024127|Gtl3|T10-2A2	cilia and flagella associated protein 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-8775108-2	chr4	8775008	8775208	+	765.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355382, intron 1 of 36)	L2|LINE|L2	23784.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-66015189-4	chr5	66015097	66015297	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10912.0	NR_027961	231253.0	Mm.436542	NM_177679	ENSMUSG00000054598	9130230L23Rik	-	RIKEN cDNA 9130230L23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124859960-4	chr6	124859842	124860042	+	959.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013533, intron 3 of 4)	intron (NM_013533, intron 3 of 4)	-2255.0	NM_013534	14789.0	Mm.35708	NM_013534	ENSMUSG00000023191	P3h3	BC016431|Grcb|Leprel2	prolyl 3-hydroxylase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-17485100-1	chr10	17485000	17485200	+	700.666687	f0_balb.idr	Intergenic	Intergenic	-238128.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98191132-2	chr11	98191032	98191232	+	753.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080118, intron 1 of 16)	intron (NM_001080118, intron 1 of 16)	1774.0	NM_013634	19014.0	Mm.12926	NM_013634	ENSMUSG00000018160	Med1	AI480703|CRSP210|DRIP205|PBP|Pparbp|TRAP220|TRIP-2|l11Jus15	mediator complex subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-5610581-3	chr5	5610489	5610689	+	749.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172447, intron 13 of 22)	intron (NM_172447, intron 13 of 22)	36790.0	NR_033499	667705.0	Mm.376656	NR_033499	ENSMUSG00000073234	Gm8773	EG667705|Gm29287	predicted gene 8773	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-76403806-1	chr12	76403706	76403906	+	1000.0	f0_c57.idr	promoter-TSS (NM_008301)	promoter-TSS (NM_008301)	-370.0	NM_001002012	15512.0	Mm.296181	NM_008301	ENSMUSG00000059970	Hspa2	70kDa|HSP70.2|HSP70A2|Hsp70-2	heat shock protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-31110338-1	chr3	31110238	31110438	+	730.0	f0_balb.idr	intron (NM_001039090, intron 2 of 6)	intron (NM_001039090, intron 2 of 6)	15280.0	NM_001271772	20482.0	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56614609-2	chr17	56614509	56614709	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_018730)	TTS (NM_018730)	1214.0	NM_018730	54217.0	Mm.11376	NM_018730	ENSMUSG00000057863	Rpl36	-	ribosomal protein L36	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-78191190-2	chr11	78191090	78191290	+	628.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159482, intron 7 of 10)	intron (NM_001159482, intron 7 of 10)	-2202.0	NM_001045516	216974.0	Mm.50974	NM_001045516	ENSMUSG00000044122	Proca1	4933404M19Rik	protein interacting with cyclin A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-4302513-2	chr18	4302413	4302613	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50440.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-3958183-2	chr15	3958083	3958283	+	597.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21390.0	NM_134099	106052.0	Mm.234191	NM_134099	ENSMUSG00000022184	Fbxo4	1700096C12Rik|AI851261|AW494535|Fbx4	F-box protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-39648734-2	chr18	39648634	39648834	+	635.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-124763.0	NM_011033	18459.0	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43540322-1	chr4	43540222	43540422	+	873.0	f1_balb.idr	intron (NM_011602, intron 34 of 56)	intron (NM_011602, intron 34 of 56)	-16768.0	NM_001277875	22004.0	Mm.646	NM_009416	ENSMUSG00000028464	Tpm2	Tpm-2|Trop-2	tropomyosin 2, beta	protein-coding	0.846849187984716	1.33645505690823	0.682794548575996	1.23537858926865	0.854011745602836	1.34887702376763	2.24226417387463	0.671519990656838	1.37256530861979	0.324639670468031	0.827392680372739
Merged-chr10-81055672-2	chr10	81055572	81055772	+	842.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358550, intron 1 of 11)	intron (NM_001358550, intron 1 of 11)	4504.0	NM_001358549	52551.0	Mm.30068	NM_024499	ENSMUSG00000004937	Sgta	5330427H01Rik|AI194281|D10Ertd190e|Sgt|Stg	small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-20333183-3	chr11	20333103	20333303	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018861)	promoter-TSS (NM_018861)	-490.0	NM_018861	55963.0	Mm.6379	NM_018861	ENSMUSG00000020142	Slc1a4	ASCT-1|ASCT1|AW045657|SATT	solute carrier family 1 (glutamate/neutral amino acid transporter), member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-13430565-3	chr9	13430513	13430713	+	831.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028271)	promoter-TSS (NR_028271)	-748.0	NR_028271	18689.0	Mm.41972	NM_008835	ENSMUSG00000031802	Phxr4	Sp5	per-hexamer repeat gene 4	ncRNA	-0.202500471717358	-0.655583835598239	-0.658889288426782	-0.661433489785496	-0.665019621783252	-0.654837534854276	-0.658161001983565	-0.130974292714595	0.263984665833299	0.928154930818539	1
Merged-chr15-85811358-1	chr15	85811258	85811458	+	1000.0	f1_balb.idr	intron (NM_197998, intron 1 of 4)	CpG	339.0	NM_001164626	72355.0	Mm.33706	NM_197998	ENSMUSG00000064284	Cdpf1	2210021J22Rik	cysteine rich, DPF motif domain containing 1	protein-coding	3.1631450928863	2.66935049794466	2.57687097011508	3.26112150197389	3.41987024603069	3.33500044953131	1.58454774663867	2.64233086140656	-0.0346757563835927	0.963758576359147	0.998431161219273
Merged-chr5-117414091-4	chr5	117413857	117414057	+	903.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001312914)	promoter-TSS (NM_001312914)	-45.0	NM_001312914	333050.0	Mm.437947	NM_001034873	ENSMUSG00000061578	Ksr2	-	kinase suppressor of ras 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118640129-3	chr9	118640035	118640235	+	770.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 4 of 27)	intron (NM_133721, intron 4 of 27)	33426.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-140990760-3	chr7	140990659	140990859	+	773.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19985.0	NM_025378	66141.0	Mm.141021	NM_025378	ENSMUSG00000025492	Ifitm3	1110004C05Rik|Cd225|Cdw217|DSPA2b|Fgls|IP15|mil-1	interferon induced transmembrane protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-53412369-3	chr10	53412267	53412467	+	867.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152767, intron 1 of 2)	Lx9|LINE|L1	2485.0	NR_152767	102640074.0	Mm.412957	NR_152767		Gm36229	-	predicted gene, 36229	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-136429830-4	chr5	136429738	136429938	+	940.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291238, intron 2 of 22)	intron (NM_001291238, intron 2 of 22)	-54035.0	NR_030500	723975.0		NR_030500	ENSMUSG00000106479	Mir721	Mirn721|miRY|mir-721|mmu-mir-721	microRNA 721	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-107503489-3	chr1	107503401	107503601	+	870.25	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-7922.0	NM_001174170	18788.0	Mm.271870	NM_011111	ENSMUSG00000062345	Serpinb2	PAI-2|Planh2|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-52600701-4	chr18	52600608	52600808	+	794.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15207.0	NM_025749	66758.0	Mm.251599	NM_025749	ENSMUSG00000046886	Zfp474	4933409D10Rik|Znf474	zinc finger protein 474	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-8099022-2	chr14	8098922	8099122	+	628.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360314, intron 1 of 19)	(TCTCTG)n|Simple_repeat|Simple_repeat	811.0	NM_001360315	218699.0	Mm.29515	NM_145458	ENSMUSG00000033885	Pxk	C230080L11Rik|D14Ertd813e|Monaka|Slob	PX domain containing serine/threonine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171634088-1	chr1	171633988	171634188	+	876.0	f1_balb.idr	3' UTR (NM_144539, exon 8 of 8)	3' UTR (NM_144539, exon 8 of 8)	7812.0	NR_106151	102465784.0		NR_106151	ENSMUSG00000098316	Mir7683	Gm27950|mmu-mir-7683	microRNA 7683	ncRNA	0.271648314225488	0.995730786897208	0.132558997598861	0.12727660986083	0.629912675795218	0.521288388184715	0.134065037401468	0.128201042964364	-0.442672080497887	0.824431587680669	1
Merged-chr4-136163678-4	chr4	136163588	136163788	+	845.5166630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8586.0	NM_177733	242705.0	Mm.307932	NM_177733	ENSMUSG00000018983	E2f2	E2F-2	E2F transcription factor 2	protein-coding	4.77304268835823	4.51429782640947	3.82373216928401	4.93023972598916	4.64195008628452	4.48751330932876	3.93691668745529	4.98473186345316	-0.0108247536601769	0.978978517195541	0.998431161219273
Merged-chr19-41308344-2	chr19	41308244	41308444	+	584.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 9 of 16)	intron (NM_031376, intron 9 of 16)	-44340.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-8863726-5	chr5	8863573	8863773	+	926.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011075, intron 26 of 27)	intron (NM_011075, intron 26 of 27)	-30048.0	NM_008830	18670.0	Mm.297825	NM_008830	ENSMUSG00000042476	Abcb4	Mdr2|Pgy-2|Pgy2|mdr-2	ATP-binding cassette, sub-family B (MDR/TAP), member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167774068-2	chr2	167773968	167774168	+	995.9285890000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	82891.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-30959111-3	chr4	30958989	30959189	+	886.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3C|LINE|L1	294493.0	NR_040655	75332.0	Mm.108636	NR_040655		4930556G01Rik	-	RIKEN cDNA 4930556G01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-8556413-2	chr1	8556313	8556513	+	729.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027671, intron 14 of 20)	Lx3A|LINE|L1	743464.0	NM_001290393	71096.0	Mm.336395	NM_027671	ENSMUSG00000025909	Sntg1	4933426D16Rik|G1SYN|SYN4	syntrophin, gamma 1	protein-coding	-0.606223530887628	-0.596017175029413	-0.599372688673004	-0.3064695119713	-0.605589590320411	-0.59525924408186	-0.0343785362654041	-0.439600341719807	1.39818878683452	0.604700233492124	1
Merged-chr4-44910301-3	chr4	44910194	44910394	+	974.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138590, intron 6 of 8)	intron (NM_138590, intron 6 of 8)	-71100.0	NM_080289	76238.0	Mm.196574	NM_080289	ENSMUSG00000035637	Grhpr	1110059D05Rik|6430629L09Rik|Glxr	glyoxylate reductase/hydroxypyruvate reductase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-57430084-1	chr8	57429984	57430184	+	749.0	f1_c57bl6.idr	Intergenic	Lx2B2|LINE|L1	-25839.0	NM_009136	20284.0	Mm.12886	NM_009136	ENSMUSG00000031610	Scrg1	AW124307	scrapie responsive gene 1	protein-coding	0.912591720726752	0.803357398972909	0.396635264613937	0.389189516149805	0.924045597283008	1.41968829703166	0.398750768707172	0.390495475226095	1.07013558116698	0.548720648267433	1
Merged-chr11-69557156-2	chr11	69557056	69557256	+	798.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_007911, intron 2 of 4)	intron (NM_007911, intron 2 of 4)	3081.0	NM_007911	13643.0	Mm.249637	NM_007911	ENSMUSG00000003934	Efnb3	EFL-6|ELF-3|Elk-L3|Epl8|LERK-8|NLERK-2	ephrin B3	protein-coding	0.288216182278189	0.946941095806739	0.777467011632649	0.297851998439011	0.289653877988713	0.832455593251191	0.787465761731079	0.298862172619335	-0.197554582138591	0.917247404823167	1
Merged-chr5-107944965-4	chr5	107944878	107945078	+	750.950012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026062, intron 1 of 4)	L1MD1|LINE|L1	42099.0	NM_026062	67266.0	Mm.277897	NM_026062	ENSMUSG00000029270	Fam69a	2900024C23Rik|AI315274	family with sequence similarity 69, member A	protein-coding	-0.539072095141396	-1.17607782048307	-1.18720726126045	-1.19634931528472	-1.20196491063698	-1.17366602423904	-1.18468779981884	-1.19471289198531	-2.68787187143179	0.435473844436726	1
Merged-chr3-31081472-2	chr3	31081372	31081572	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13586.0	NM_001039090	20482.0	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126594660-4	chr8	126594556	126594756	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG-14677	-1220.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	6.06311131162491	6.30036434934157	6.34214753708919	5.55735567379794	6.4190565366351	5.99543638285665	6.13267918301272	5.75140992944701	0.00636106470704708	0.979836708585388	0.998431161219273
Merged-chr12-34433595-3	chr12	34433498	34433698	+	968.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271386, intron 5 of 27)	intron (NM_001271386, intron 5 of 27)	95291.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-93080022-3	chr7	93079915	93080115	+	729.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_021427, exon 1 of 2)	5' UTR (NM_021427, exon 1 of 2)	136.0	NM_021427	58238.0	Mm.113787	NM_021427	ENSMUSG00000051515	Fam181b	A830059I20Rik|AB041569	family with sequence similarity 181, member B	protein-coding	2.32985050281023	3.8920060076668	2.39447333790925	3.320818082125	2.8791453487717	2.50464802518974	1.5138621653684	3.40356975771823	-0.686864070693964	0.395223267199446	0.882909751294042
Merged-chr8-126931399-2	chr8	126931299	126931499	+	805.25	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_024214, exon 5 of 5)	3' UTR (NM_024214, exon 5 of 5)	14522.0	NM_024214	67952.0	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-108479698-3	chr9	108479549	108479749	+	712.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008483)	promoter-TSS (NM_008483)	-213.0	NM_008483	16779.0	Mm.27560	NM_008483	ENSMUSG00000052911	Lamb2	AW211941|Lamb-2|Lams|npht	laminin, beta 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-73366927-1	chr7	73366827	73367027	+	567.0	f1_c57bl6.idr	intron (NR_040324, intron 1 of 2)	intron (NR_040324, intron 1 of 2)	-8593.0	NM_177740	244058.0	Mm.333943	NM_177740	ENSMUSG00000070509	Rgma	BC059072|C230063O06	repulsive guidance molecule family member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152541835-4	chr1	152541606	152541806	+	943.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 9 of 17)	B1F|SINE|Alu	83511.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65360142-2	chr9	65360042	65360242	+	765.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001111145)	promoter-TSS (NM_001111145)	-918.0	NM_001111145	208080.0	Mm.291862	NM_001111145	ENSMUSG00000086228	Ubap1l	Gm514	ubiquitin-associated protein 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126589838-2	chr8	126589738	126589938	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001164598, exon 2 of 2)	3' UTR (NM_001164598, exon 2 of 2)	3598.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	2.35122473134534	2.75105433988238	1.36499687272534	2.7540459930633	2.37135534060761	2.7717510066685	1.37353696860344	2.76840860637021	0.0358280939233189	0.970075455165855	0.998431161219273
Merged-chr1-86398484-4	chr1	86398335	86398535	+	883.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9074.0	NM_001319227	14767.0	Mm.389159	NM_010341	ENSMUSG00000026237	Nmur1	FM-3|Gpr66|NMU-R1|NMU1R|NmU-R	neuromedin U receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-91179261-4	chr1	91179211	91179411	+	790.016663	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178401)	promoter-TSS (NM_178401)	-511.0	NM_016894	51801.0	Mm.3272	NM_016894	ENSMUSG00000034353	Ramp1	9130218E19Rik	receptor (calcitonin) activity modifying protein 1	protein-coding	2.62942151403435	2.19326585566495	3.43529483168191	2.77057177970406	3.14173862561552	3.0769566840262	2.8720919146281	2.98041594120862	0.325031658188001	0.632597809697742	0.982230082053879
Merged-chr10-62794819-2	chr10	62794719	62794919	+	736.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-2451.0	NM_026201	67500.0	Mm.196371	NM_026201	ENSMUSG00000020074	Ccar1	2610511G16Rik|9430036H15Rik|Carp1	cell division cycle and apoptosis regulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123436956-1	chr5	123436856	123437056	+	612.0	f0_c57.idr	intron (NM_133917, intron 1 of 16)	intron (NM_133917, intron 1 of 16)	42158.0	NM_177582	208104.0	Mm.83277	NM_133917	ENSMUSG00000038342	Mlxip	AW228700|Mir|bHLHe36	MLX interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120232799-4	chr11	120232692	120232892	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347621)	promoter-TSS (NM_001347621)	-155.0	NM_001347621	268515.0	Mm.309498	NM_198423	ENSMUSG00000039741	Bahcc1	B930044J06|BC060615	BAH domain and coiled-coil containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-120825784-4	chr4	120825681	120825881	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001277095)	promoter-TSS (NM_001277095)	-40.0	NM_008692	18046.0	Mm.318389	NM_008692	ENSMUSG00000032897	Nfyc	-	nuclear transcription factor-Y gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3366223-2	chr19	3366123	3366323	+	700.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013495, intron 8 of 18)	intron (NM_013495, intron 8 of 18)	-22634.0	NM_001039658	17771.0	Mm.209941	NM_010841	ENSMUSG00000024905	Tesmin	Mtl5	testis expressed metallothionein like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-49904530-4	chr16	49904433	49904633	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010581, intron 8 of 9)	Lx8|LINE|L1	48879.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129700393-3	chr2	129700291	129700491	+	714.866638	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018863)	promoter-TSS (NM_018863)	-453.0	NM_018863	18610.0	Mm.6239	NM_018863	ENSMUSG00000027400	Pdyn	Dyn	prodynorphin	protein-coding	1.75986706167372	2.27268351065446	1.52367888226461	2.88805714732183	1.6156402277697	1.98964148409341	1.9230410237276	2.77395350604139	-0.16777434726608	0.860981388430592	0.998431161219273
Merged-chr7-80755673-1	chr7	80755573	80755773	+	666.0	f0_balb.idr	intron (NM_016721, intron 11 of 37)	intron (NM_016721, intron 11 of 37)	47658.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-137871119-3	chr4	137871026	137871226	+	878.2777710000001	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	intron (NM_199307, intron 1 of 19)	L2|LINE|L2	8889.0	NM_199307	230857.0	Mm.401062	NM_199307	ENSMUSG00000057530	Ece1	AW322500|ECE-1|ECE-1a|ECE-1b|ECE-1d	endothelin converting enzyme 1	protein-coding	3.57864763350178	2.65247038679544	3.73302041300594	4.66548060322032	3.38872771500303	3.96759217055216	3.59570461666827	4.71942313862937	0.232505554295228	0.686566049521177	0.996533206832645
Merged-chr3-40728755-2	chr3	40728655	40728855	+	622.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	-16858.0	NM_011020	18415.0	Mm.39330	NM_011020	ENSMUSG00000025757	Hspa4l	94kDa|AI461691|APG-1|Osp94	heat shock protein 4 like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-61277815-4	chr9	61277718	61277918	+	765.825012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045334, intron 3 of 4)	intron (NR_045334, intron 3 of 4)	15991.0	NR_045334	622037.0	Mm.126243	NR_045334	ENSMUSG00000111658	B930092H01Rik	-	RIKEN cDNA B930092H01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-160726848-2	chr2	160726748	160726948	+	843.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-4462.0	NM_021280	18803.0	Mm.44463	NM_021280	ENSMUSG00000016933	Plcg1	AI894140|Cded|Plc-1|Plc-gamma1|Plcg-1	phospholipase C, gamma 1	protein-coding	-0.605159523701947	-0.594116237171468	-0.597738223658067	0.0306133245632224	-0.604471279605959	-0.593299269534912	-0.596939695456833	-0.167618268272535	-0.704591710035489	0.805658358061801	1
Merged-chr15-53139053-4	chr15	53138957	53139157	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	207126.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-82787269-2	chr18	82787169	82787369	+	550.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-28230.0	NR_045389	76961.0	Mm.396392	NR_045389	ENSMUSG00000101773	2210420H20Rik	-	RIKEN cDNA 2210420H20 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-3126090-2	chr11	3126017	3126217	+	857.333374	f1_balb.idr|f1_c57bl6.idr	intron (NR_003517, intron 2 of 6)	intron (NR_003517, intron 2 of 6)	2096.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-37050865-2	chr19	37050765	37050965	+	835.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198300, intron 9 of 10)	intron (NM_198300, intron 9 of 10)	-122978.0	NR_045329	319931.0	Mm.446730	NR_045329	ENSMUSG00000097591	A330032B11Rik	-	RIKEN cDNA A330032B11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-38430150-2	chr2	38430050	38430250	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	78842.0	NM_010710	16870.0	Mm.142856	NM_010710	ENSMUSG00000000247	Lhx2	LH2A|Lh-2|Lim2|ap|apterous	LIM homeobox protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-107314334-4	chr4	107314225	107314425	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145550)	promoter-TSS (NM_145550)	-38.0	NM_145550	230584.0	Mm.29118	NM_145550	ENSMUSG00000057375	Yipf1	C030002N13Rik	Yip1 domain family, member 1	protein-coding	4.15468795552027	4.6625130096548	3.1132837582998	4.16118296171536	4.39657108028331	4.32614264906878	3.99678881441412	4.00720623961776	0.0891155866921989	0.847554657827633	0.998431161219273
Merged-chr10-18997939-1	chr10	18997839	18998039	+	601.0	f1_balb.idr	Intergenic	RLTR34B_MM|LTR|ERVK	14024.0	NM_001166402	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	-1.04446994549586	-1.02430150555533	-0.85571191593018	-1.04088093696898	-1.04393624043168	-1.02172839526125	-0.444248496842517	-1.04050309324358	1.85096186283575	0.558013953607104	1
Merged-chr12-98278458-4	chr12	98278353	98278553	+	833.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9818.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-8927818-4	chr12	8927738	8927938	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008640, intron 1 of 6)	MTD|LTR|ERVL-MaLR	6531.0	NM_008640	17775.0	Mm.30071	NM_008640	ENSMUSG00000020585	Laptm4a	AA286466|LAPTM4|MTP|Mtrp|mKIAA0108	lysosomal-associated protein transmembrane 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-44457956-2	chr10	44457856	44458056	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007548, intron 1 of 6)	intron (NM_007548, intron 1 of 6)	792.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-94333577-2	chr8	94333477	94333677	+	984.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_001205311, exon 5 of 25)	exon (NM_001205311, exon 5 of 25)	4369.0	NM_001205311	20497.0	Mm.25804	NM_019415	ENSMUSG00000031766	Slc12a3	AI035291|NCC|NCCT|TSC	solute carrier family 12, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-67785853-3	chr15	67785726	67785926	+	908.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	473030.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	2.47293826933102	2.43669396754168	2.47373288552682	2.40658026360733	2.19975829679369	1.98326847816561	2.86492197210333	2.17935312189388	-0.198272385569489	0.805359867085728	0.998431161219273
Merged-chr6-148940563-4	chr6	148940446	148940646	+	598.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361398, intron 1 of 4)	B2_Mm2|SINE|B2	4280.0	NM_001355645	56306.0	Mm.18637	NM_019643	ENSMUSG00000039985	Fam60a	Ppcs1|Pptcs1|Sinhcaf|Tera	family with sequence similarity 60, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-3718171-4	chr16	3718062	3718262	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161790)	promoter-TSS (NM_001161790)	-38.0	NM_001161791	54483.0	Mm.143718	NM_019453	ENSMUSG00000022534	Mefv	FMF|TRIM20|pyrin	Mediterranean fever	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-22436418-4	chr11	22436329	22436529	+	910.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-75854.0	NM_153596	103765.0	Mm.221274	NM_153596	ENSMUSG00000049904	Tmem17	AI503894|AW049890	transmembrane protein 17	protein-coding	2.14669235875667	2.51394856312472	2.6101923788824	1.72673266185532	2.50301564746071	2.01640249826742	1.78344091344161	1.73457888001033	-0.582372736013957	0.521508679637561	0.947836760490745
Merged-chr11-121706929-4	chr11	121706839	121707039	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144797, intron 1 of 3)	intron (NM_144797, intron 1 of 3)	4512.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-101680040-2	chr13	101679940	101680140	+	953.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001077495)	TTS (NM_001077495)	12590.0	NM_001024955	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-193580658-1	chr1	193580558	193580758	+	645.0	f1_c57bl6.idr	Intergenic	Intergenic	-73128.0	NR_029592	387201.0		NR_029592	ENSMUSG00000065533	Mir205	Mirn205|mir-205|mmu-mir-205	microRNA 205	ncRNA	2.7416537695954	1.45425713169899	2.08277966454195	2.71640874879821	2.0364002830768	1.1877753433061	1.15814490110919	1.90062448674366	-1.79289391638233	0.0952474654758524	0.47819301981231
Merged-chr10-81171476-2	chr10	81171376	81171576	+	865.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-3756.0	NM_021501	59004.0	Mm.34428	NM_021501	ENSMUSG00000004934	Pias4	PIASY|Pias-gamma|Piasg	protein inhibitor of activated STAT 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-135175190-1	chr6	135175090	135175290	+	647.5	f0_balb.idr	Intergenic	RMER15|LTR|ERVL	-6975.0	NM_013546	15199.0	Mm.378937	NM_013546	ENSMUSG00000042770	Hebp1	Hebp|p22HBP	heme binding protein 1	protein-coding	0.96054145132307	0.409229512786253	0.4016014242695	0.395695773927802	0.881470437464919	0.410945120792194	0.993382222880589	0.948102802950264	1.4686073668407	0.422180509918409	1
Merged-chr10-67315275-4	chr10	67315166	67315366	+	779.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29985.0	NM_001036293	641340.0	Mm.136223	NM_001036293	ENSMUSG00000075000	Nrbf2	NRBF-2	nuclear receptor binding factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-35904581-4	chr16	35904477	35904677	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33195.0	NM_001039530	547253.0	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-54983240-4	chr13	54983143	54983343	+	871.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153131, intron 1 of 15)	intron (NM_153131, intron 1 of 15)	33832.0	NM_001311128	107448.0	Mm.23573	NM_153131	ENSMUSG00000025876	Unc5a	Unc5h1|mKIAA1976	unc-5 netrin receptor A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-99109954-2	chr2	99109854	99110054	+	820.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	1642297.0	NM_178725	241568.0	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-72868507-4	chr5	72868395	72868595	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113460)	promoter-TSS (NM_001113460)	-47.0	NM_001113460	21682.0	Mm.319581	NM_013689	ENSMUSG00000029217	Tec	-	tec protein tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-99763538-3	chr14	99763437	99763637	+	984.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	386259.0	NM_010636	16597.0	Mm.396499	NM_010636	ENSMUSG00000072294	Klf12	2700063E05Rik|AI225908|AI315654|AP-2rep|B130052C06Rik|D530033K05Rik	Kruppel-like factor 12	protein-coding	1.692577532398	1.17988559480633	1.14053514147635	1.79843217271771	2.42196526464828	2.8394910818994	3.43165110485367	1.80907366966463	3.01779617769542	0.00295380053168302	0.0449742370293564
Merged-chr1-165193930-4	chr1	165193845	165194045	+	926.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151711, intron 1 of 6)	CpG	488.0	NM_145512	108735.0	Mm.288369	NM_145512	ENSMUSG00000040848	Sft2d2	2010005O13Rik|AI506168|AW561909|cI-45	SFT2 domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-82942072-4	chr9	82941977	82942177	+	914.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081216, intron 7 of 39)	intron (NM_001081216, intron 7 of 39)	33412.0	NM_001081216	83946.0	Mm.221688	NM_031879	ENSMUSG00000032253	Phip	2810004D21Rik|4632404O06Rik|Ndrp|Wdr11	pleckstrin homology domain interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4811703-4	chr19	4811620	4811820	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019869)	promoter-TSS (NM_019869)	-86.0	NM_019869	56275.0	Mm.276338	NM_019869	ENSMUSG00000006456	Rbm14	1300007E16Rik|PSP2|Sytip|p16|p16K	RNA binding motif protein 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-34193543-4	chr13	34193439	34193639	+	799.645813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033167, intron 7 of 10)	intron (NM_001033167, intron 7 of 10)	30575.0	NM_001110515	69666.0	Mm.24788	NM_001101430	ENSMUSG00000071451	Psmg4	PAC-4|mPAC4	proteasome (prosome, macropain) assembly chaperone 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-52090339-6	chr3	52090202	52090402	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	14704.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-107777236-1	chr4	107777136	107777336	+	701.0	f0_balb.idr	Intergenic	Intergenic	-25023.0	NR_033496	16975.0	Mm.442134	NM_053073	ENSMUSG00000028613	Lrp8	4932703M08Rik|AA921429|AI848122|ApoER2|Lr8b	low density lipoprotein receptor-related protein 8, apolipoprotein e receptor	protein-coding	2.09930731986129	2.94882348104742	3.10327753735753	2.10209150667901	1.55621506160426	1.22878211485437	1.46983523326939	1.82064422995518	-2.78723071876803	0.00476989110090993	0.0645927239601775
Merged-chr6-17635170-4	chr6	17635061	17635261	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1849.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	2.47423003950428	2.30320546753696	1.91383338889867	2.76739866917912	2.201416822961	2.5766708375962	2.49376753335385	2.30702060687153	-0.0206090974713097	0.9795674930579	0.998431161219273
Merged-chr12-70110931-3	chr12	70110890	70111090	+	958.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286079, intron 1 of 28)	intron (NM_001286079, intron 1 of 28)	639.0	NR_104398	18080.0	Mm.244047	NM_008697	ENSMUSG00000021068	Nin	3110068G20Rik|AI385615|AU024711|mKIAA1565	ninein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-56042610-2	chr9	56042510	56042710	+	577.666626	f1_balb.idr|f1_c57bl6.idr	exon (NM_011992, exon 2 of 7)	exon (NM_011992, exon 2 of 7)	765.0	NM_011992	26611.0	Mm.1782	NM_011992	ENSMUSG00000032320	Rcn2	AA408742|Tcbp49	reticulocalbin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128733135-2	chr2	128733035	128733235	+	604.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 2 of 18)	RLTR17B_Mm|LTR|ERVK	34220.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115062205-4	chr11	115062103	115062303	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172050)	promoter-TSS (NM_172050)	-164.0	NM_172050	217306.0	Mm.222667	NM_172050	ENSMUSG00000048498	Cd300e	BC034097|CLM2|Cd300le|TREM5	CD300E molecule	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-59226427-2	chr11	59226329	59226529	+	764.5	f0_balb.idr|f0_c57.idr	intron (NM_007476, intron 1 of 4)	intron (NM_007476, intron 1 of 4)	1733.0	NM_001130408	11840.0	Mm.371546	NM_007476	ENSMUSG00000048076	Arf1	-	ADP-ribosylation factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-140987088-7	chr4	140986974	140987174	+	985.9387820000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029097, exon 1 of 29)	exon (NM_029097, exon 1 of 29)	201.0	NM_001164366	74772.0	Mm.205625	NM_029097	ENSMUSG00000036622	Atp13a2	1110012E06Rik|AA589443	ATPase type 13A2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-18608113-3	chr19	18608009	18608209	+	917.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017375, intron 1 of 9)	intron (NM_017375, intron 1 of 9)	23704.0	NM_017375	20409.0	Mm.172222	NM_017375	ENSMUSG00000024725	Ostf1	C78236|SH3P2|Sh3d3	osteoclast stimulating factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-99293977-4	chr5	99293869	99294069	+	818.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41042.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	2.67060167178292	2.90225816146228	3.34753184724852	2.98288142567559	2.14811679362415	1.52846115311784	2.92169277238319	2.10272302509492	-1.42035567772612	0.0728850994281856	0.407691167528903
Merged-chr6-145275043-1	chr6	145274943	145275143	+	928.0	f1_c57bl6.idr	Intergenic	Intergenic	24491.0	NR_045598	100039495.0	Mm.121014	NR_045598	ENSMUSG00000086013	Gm15706	-	predicted gene 15706	ncRNA	2.56898624363627	2.35449528774585	2.02767735586576	1.47352554951627	2.29595968676845	2.48177068555692	1.27032993605728	1.83801968182776	-0.284215741028226	0.775912594979123	0.998431161219273
Merged-chr18-84590398-4	chr18	84590247	84590447	+	934.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033341)	promoter-TSS (NM_001033341)	-843.0	NM_001033341	240476.0	Mm.329575	NM_001033341	ENSMUSG00000048410	Zfp407	6430585N13Rik|Gm333|Gm334|Gm948|ZNF407	zinc finger protein 407	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-143459278-2	chr7	143459178	143459378	+	657.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001354981, intron 2 of 3)	CpG-13764	1772.0	NM_009876	12577.0	Mm.168789	NM_009876	ENSMUSG00000037664	Cdkn1c	AL024410|CDKI|Kip2|p57(kip2)|p57Kip2	cyclin-dependent kinase inhibitor 1C (P57)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70409543-2	chr11	70409443	70409643	+	557.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029231, intron 1 of 16)	intron (NM_029231, intron 1 of 16)	488.0	NM_029231	75273.0	Mm.340601	NM_029231	ENSMUSG00000018921	Pelp1	4930563C04Rik|MNAR	proline, glutamic acid and leucine rich protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-50074916-1	chr6	50074816	50075016	+	614.0	f1_balb.idr	Intergenic	RMER3D-int|LTR|ERVK	-35325.0	NM_019939	56524.0	Mm.41288	NM_008016	ENSMUSG00000038388	Mpp6	P55t|Pals2	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	protein-coding	0.751493640547229	0.601403001687198	0.585407019128186	0.57273768750288	1.80724743030673	1.40007947300775	0.588975052049766	1.8568089500365	4.30672459886768	0.00825890238500996	0.0949747388006544
Merged-chr8-13562453-2	chr8	13562353	13562553	+	729.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080781)	promoter-TSS (NM_001080781)	8.0	NM_025601	66501.0	Mm.46136	NM_025601	ENSMUSG00000031452	1700029H14Rik	-	RIKEN cDNA 1700029H14 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-54257160-3	chr11	54257067	54257267	+	820.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7268.0	NM_009969	12981.0	Mm.4922	NM_009969	ENSMUSG00000018916	Csf2	CSF|Csfgm|GMCSF|Gm-CSf|MGI-IGM	colony stimulating factor 2 (granulocyte-macrophage)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-39674244-2	chr9	39674144	39674344	+	559.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR25A|LTR|ERVK	5185.0	NM_001011827	258087.0	Mm.377346	NM_001011827	ENSMUSG00000064110	Olfr963	MOR224-13|MOR224-7P	olfactory receptor 963	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-154372705-4	chr2	154372614	154372814	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025876)	promoter-TSS (NM_025876)	5.0	NM_025876	66971.0	Mm.289427	NM_025876	ENSMUSG00000027487	Cdk5rap1	2310066P17Rik	CDK5 regulatory subunit associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96747076-4	chr3	96747015	96747215	+	807.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026406, intron 1 of 8)	intron (NM_026406, intron 1 of 8)	19504.0	NM_026406	67845.0	Mm.386792	NM_026406	ENSMUSG00000028098	Rnf115	2610028E05Rik|AU042696|Zfp364	ring finger protein 115	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-144555383-2	chr2	144555283	144555483	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019787)	promoter-TSS (NM_019787)	-846.0	NM_001252544	27054.0	Mm.248492	NM_019787	ENSMUSG00000027429	Sec23b	-	SEC23 homolog B, COPII coat complex component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-75151050-4	chr8	75150949	75151149	+	928.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41540.0	NM_008566	17218.0	Mm.5048	NM_008566	ENSMUSG00000005410	Mcm5	AA617332|AI324988|AL033333|Cdc46|Mcmd5|P1-CDC46	minichromosome maintenance complex component 5	protein-coding	1.40491628792525	1.60902553280763	1.54467921217994	0.766237222357001	0.926707028566056	1.02110413025876	1.55905343007043	0.768097482681028	-1.03788971067286	0.456312120500154	0.919264728457769
Merged-chr6-24955270-6	chr6	24955161	24955361	+	865.033325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177013, exon 1 of 1)	exon (NM_177013, exon 1 of 1)	864.0	NM_177013	319832.0	Mm.127446	NM_177013	ENSMUSG00000048022	Tmem229a	6332401O19Rik	transmembrane protein 229A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100610329-2	chr11	100610229	100610429	+	864.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_019795, intron 1 of 13)	intron (NM_019795, intron 1 of 13)	9839.0	NM_019795	56354.0	Mm.402409	NM_019795	ENSMUSG00000014195	Dnajc7	2010003F24Rik|2010004G07Rik|CCRP|Ttc2|mDj11|mTpr2	DnaJ heat shock protein family (Hsp40) member C7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-17921053-2	chr16	17920953	17921153	+	630.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5994.0	NM_029469	195333.0	Mm.463003	NM_029469	ENSMUSG00000022738	Gsc2	4930568H22Rik|GSC-2|Gscl	goosecoid homebox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141447651-4	chr7	141447545	141447745	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360657)	promoter-TSS (NM_001360657)	-6.0	NM_026020	67186.0	Mm.380435	NM_026020	ENSMUSG00000025508	Rplp2	2700049I22Rik	ribosomal protein, large P2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-120959408-2	chr6	120959308	120959508	+	829.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001270475, exon 26 of 32)	exon (NM_001270475, exon 26 of 32)	564.0	NR_138099	215458.0	Mm.122399	NR_138099		LOC215458	-	uncharacterized LOC215458	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-36067950-4	chr16	36067850	36068050	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027342, intron 1 of 4)	intron (NM_027342, intron 1 of 4)	3565.0	NM_027342	70186.0	Mm.212991	NM_027342	ENSMUSG00000003955	Fam162a	2310056P07Rik|HGTD-P	family with sequence similarity 162, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-4159498-3	chr12	4159408	4159608	+	893.194458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159537, intron 2 of 21)	intron (NM_001159537, intron 2 of 21)	25355.0	NM_138305	104111.0	Mm.489807	NM_138305	ENSMUSG00000020654	Adcy3	AC3|mKIAA0511	adenylate cyclase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191392734-3	chr1	191392641	191392841	+	813.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144880, intron 1 of 12)	intron (NM_144880, intron 1 of 12)	4300.0	NM_144880	226849.0	Mm.205569	NM_144880	ENSMUSG00000026626	Ppp2r5a	PR61alpha	protein phosphatase 2, regulatory subunit B', alpha	protein-coding	1.58331371373454	2.34782340264186	2.63505130561229	1.82355969170293	1.41704074800731	2.10826417411562	2.48632792064246	1.83266654367196	-0.359691446561737	0.709148470075255	0.998431161219273
Merged-chr11-61469500-4	chr11	61469388	61469588	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15496.0	NM_001291024	22671.0	Mm.89201	NM_009548	ENSMUSG00000010086	Rnf112	ZNF179|Zfp179|bfp|neurolastin	ring finger protein 112	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-66831133-4	chr9	66831045	66831245	+	981.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026674, intron 2 of 5)	intron (NM_026674, intron 2 of 5)	3561.0	NM_026674	68318.0	Mm.284229	NM_026674	ENSMUSG00000053040	Aph1c	0610008A10Rik|APH-1b|Aph1b	aph1 homolog C, gamma secretase subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-126024653-4	chr4	126024574	126024774	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045561)	promoter-TSS (NR_045561)	15.0	NM_001252651	12986.0	Mm.271701	NM_007782	ENSMUSG00000028859	Csf3r	Cd114|Csfgr|G-CSF-R|G-CSFR	colony stimulating factor 3 receptor (granulocyte)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-114827625-4	chr5	114827523	114827723	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4155.0	NM_181075	330173.0	Mm.482205	NM_181075	ENSMUSG00000092486	2610524H06Rik	-	RIKEN cDNA 2610524H06 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91096729-4	chr2	91096643	91096843	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011355)	promoter-TSS (NM_011355)	65.0	NM_011355	20375.0	Mm.1302	NM_011355	ENSMUSG00000002111	Spi1	Dis-1|Dis1|PU.1|Sfpi-1|Sfpi1|Spi-1|Tcfpu1|Tfpu.1	spleen focus forming virus (SFFV) proviral integration oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-93918031-2	chr16	93917931	93918131	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_019500)	TTS (NM_019500)	11536.0	NM_001165925	56173.0	Mm.328716	NM_019500	ENSMUSG00000047109	Cldn14	AI851731	claudin 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-24164322-4	chr10	24164215	24164415	+	998.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016797, intron 2 of 9)	intron (NM_016797, intron 2 of 9)	14998.0	NM_016797	53331.0	Mm.248042	NM_016797	ENSMUSG00000019998	Stx7	AI315064|AI317144|AW107239|Syn7	syntaxin 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-117543574-3	chr6	117543476	117543676	+	809.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48341.0	NR_152214	100126203.0	Mm.217172	NR_152214		6820426E19Rik	Gm43983	RIKEN cDNA 6820426E19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-117831436-3	chr12	117831341	117831541	+	839.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12420.0	NM_146040	217946.0	Mm.281149	NM_146040	ENSMUSG00000021175	Cdca7l	BC006933|JPO2	cell division cycle associated 7 like	protein-coding	2.79193998534371	3.04015414688372	2.93837726963895	2.28934949708561	3.4201302741097	1.57571271880295	2.51871342178377	2.67534629200011	-0.122026952396737	0.878608223538348	0.998431161219273
Merged-chr2-124928559-4	chr2	124928464	124928664	+	960.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-139563.0	NM_175034	317750.0	Mm.330538	NM_175034	ENSMUSG00000035183	Slc24a5	F630045L20Rik|JSX|NCKX5|NCX5|Oca6	solute carrier family 24, member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-85800006-1	chr1	85799906	85800106	+	550.0	f0_balb.idr	intron (NM_001355046, intron 2 of 9)	intron (NM_001355046, intron 2 of 9)	5989.0	NM_001355047	12283.0	Mm.26135	NM_133781	ENSMUSG00000036707	Cab39	AA408805|AA960512|C78372|MO25|MO25alpha	calcium binding protein 39	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36789612-4	chr1	36789506	36789706	+	954.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	10622.0	NM_001289612	22637.0	Mm.8038	NM_009539	ENSMUSG00000026117	Zap70	Srk|ZAP-70|mrtle|mur	zeta-chain (TCR) associated protein kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-125723739-2	chr8	125723639	125723839	+	635.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10464.0	NM_025636	66566.0	Mm.25296	NM_025636	ENSMUSG00000031851	Ntpcr	2310079N02Rik|AI449709	nucleoside-triphosphatase, cancer-related	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133464642-2	chr4	133464543	133464743	+	895.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15490.0	NM_175307	100342.0	Mm.204656	NM_175307	ENSMUSG00000046694	Fam46b	4732473B16Rik|AU045678|AU046069	family with sequence similarity 46, member B	protein-coding	-1.1306715186527	-1.10797379294626	-1.11906441266486	-1.12746538082009	-0.983028288140964	-1.10557040938762	-1.11655373946004	-0.585566221273974	2.70127814494298	0.400998399340136	1
Merged-chr9-7897016-2	chr9	7896916	7897116	+	654.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-23846.0	NM_007464	11796.0	Mm.2026	NM_007464	ENSMUSG00000032000	Birc3	AW107670|Api1|Api2|Birc2|C-IAP2|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF49|cIAP-1|cIAP-2|cIAP1|cIAP2	baculoviral IAP repeat-containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-53478164-3	chr17	53478024	53478224	+	853.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1110.0	NM_025887	271457.0	Mm.329123	NM_025887	ENSMUSG00000017831	Rab5a	2410015H04Rik|AI663973|AU021172|nnyRab5a	RAB5A, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-34818281-1	chr8	34818181	34818381	+	566.0	f1_balb.idr	intron (NM_176933, intron 3 of 3)	intron (NM_176933, intron 3 of 3)	10671.0	NM_176933	319520.0	Mm.170276	NM_176933	ENSMUSG00000031530	Dusp4	2700078F24Rik|AI844617|BB104621|E130306H24Rik|MKP2	dual specificity phosphatase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-136134602-2	chr4	136134502	136134702	+	637.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9220.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	1.53077956212468	1.09616255186263	1.42571815025584	0.69287680047278	0.981728173780466	0.928324374749259	1.20679965697045	0.694363176477394	-1.20961801105061	0.402901348819705	0.888448714577656
Merged-chr18-54993308-3	chr18	54993228	54993428	+	963.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360787)	promoter-TSS (NM_001360787)	-737.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-123510122-2	chr9	123510022	123510222	+	619.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_013860, intron 2 of 7)	intron (NM_013860, intron 2 of 7)	-19631.0	NM_001357485	83493.0	Mm.273671	NM_030692	ENSMUSG00000025240	Sacm1l	SAC1|Sac1p|mKIAA0851	SAC1 suppressor of actin mutations 1-like (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-114498411-3	chr9	114498311	114498511	+	741.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1867.0	NM_009916	12773.0	Mm.1337	NM_009916	ENSMUSG00000047898	Ccr4	C-C CKR-4|CHEMR1|Cmkbr4|LESTR|Sdf1r	chemokine (C-C motif) receptor 4	protein-coding	1.08039706810902	1.08350923660598	1.40078510776284	1.01667153058594	1.36932042899449	0.718981619910415	0.896953132206096	0.874663953548596	-0.721342847050295	0.601910498414877	0.973429960802861
Merged-chr17-26516658-1	chr17	26516558	26516758	+	1000.0	f1_c57bl6.idr	Intergenic	Intergenic	-8186.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	-0.0730893943450981	0.829016467680835	-0.0596922503540545	0.620195334537847	0.0909693499285649	-0.0517896411793698	-0.0582647528894848	-0.0638264408882004	-3.2690245829556	0.142039371867612	1
Merged-chr10-100148296-1	chr10	100148196	100148396	+	614.0	f0_c57.idr	Intergenic	Intergenic	132475.0	NM_013598	17311.0	Mm.45124	NM_013598	ENSMUSG00000019966	Kitl	Clo|Con|Gb|Kitlg|Mgf|SCF|SF|SLF|Sl|blz|contrasted	kit ligand	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-143847100-4	chr2	143846997	143847197	+	961.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291061, intron 3 of 7)	LTR16E1|LTR|ERVL	16076.0	NM_009751	12075.0	Mm.275937	NM_009751	ENSMUSG00000027420	Bfsp1	CP95	beaded filament structural protein 1, in lens-CP94	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-22040428-3	chr13	22040327	22040527	+	822.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_175656)	TTS (NM_175656)	935.0	NM_175656	319158.0	Mm.14775	NM_175656	ENSMUSG00000060639	Hist1h4i	-	histone cluster 1, H4i	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-170174334-4	chr1	170174264	170174464	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133806, intron 1 of 10)	intron (NM_133806, intron 1 of 10)	600.0	NM_133806	107652.0	Mm.27969	NM_133806	ENSMUSG00000026670	Uap1	AA420407|AA437972|AGX-1|AGX-2|AGX1|AgX|ESTM38|SPAG2	UDP-N-acetylglucosamine pyrophosphorylase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70755967-4	chr8	70755856	70756056	+	968.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009001, exon 2 of 5)	exon (NM_009001, exon 2 of 5)	1277.0	NM_001166399	19339.0	Mm.5083	NM_009001	ENSMUSG00000031840	Rab3a	-	RAB3A, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-44476617-4	chr11	44476513	44476713	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-6065.0	NM_024475	79560.0	Mm.338784	NM_024475	ENSMUSG00000041231	Ublcp1	4930527B16Rik|8430435I17Rik|BC002236	ubiquitin-like domain containing CTD phosphatase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140419341-4	chr5	140419237	140419437	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133916)	promoter-TSS (NM_133916)	32.0	NM_133916	27979.0	Mm.21671	NM_133916	ENSMUSG00000056076	Eif3b	AL033316|AL033334|AL033369|AW208965|D5Wsu45e|EIF3-ETA|EIF3-P110|EIF3-P116|Eif3s9|PRT1	eukaryotic translation initiation factor 3, subunit B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-95941905-3	chr5	95941795	95941995	+	760.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15044.0	NM_018866	55985.0	Mm.10116	NM_018866	ENSMUSG00000023078	Cxcl13	4631412M08Rik|ANGIE2|Angie|BCA-1|BLC|BLR1L|Scyb13	chemokine (C-X-C motif) ligand 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-79417296-4	chr10	79417191	79417391	+	869.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPLTR3-int|LTR|ERVK	-51667.0	NM_001104537	625029.0	Mm.469865	NM_001104537	ENSMUSG00000091381	Vmn2r83	EG625029	vomeronasal 2, receptor 83	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97454625-3	chr6	97454493	97454693	+	717.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	4693.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-17727672-1	chr6	17727572	17727772	+	651.0	f0_balb.idr	intron (NM_001289624, intron 1 of 15)	intron (NM_001289624, intron 1 of 15)	-15920.0	NM_001289627	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	-1.1306715186527	-1.10797379294626	-1.11906441266486	-1.12746538082009	-0.983028288140964	-1.10557040938762	-1.11655373946004	-0.585566221273974	2.70127814494298	0.400998399340136	1
Merged-chr2-25229541-2	chr2	25229441	25229641	+	697.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_080854, intron 12 of 12)	intron (NM_080854, intron 12 of 12)	4693.0	NM_080854	142681.0	Mm.346652	NM_080854	ENSMUSG00000006469	Slc34a3	AI649385|Npt2c|Npt2c-v1|NptIIc|naPi-2c	solute carrier family 34 (sodium phosphate), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-40245673-4	chr12	40245587	40245787	+	927.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22323.0	NR_045157	629820.0	Mm.435540	NR_045157	ENSMUSG00000035983	Gm7008	EG629820	predicted gene 7008	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44897760-3	chr7	44897689	44897889	+	890.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_027376, intron 5 of 10)	intron (NM_027376, intron 5 of 10)	1710.0	NM_027376	70300.0	Mm.276298	NM_027376	ENSMUSG00000011658	Fuz	2600013E07Rik|b2b1273Clo	fuzzy planar cell polarity protein	protein-coding	-1.8418762459921	-1.8125357239735	-1.82140854000656	-1.82869693527674	-1.56059678980999	-1.8106129477253	-1.81939992894326	-1.82739231600805	1.3620893379502	0.699511506488145	1
Merged-chr13-105051626-1	chr13	105051526	105051726	+	1000.0	f0_balb.idr	intron (NM_029879, intron 2 of 5)	intron (NM_029879, intron 2 of 5)	3304.0	NM_029879	52882.0	Mm.100348	NM_029879	ENSMUSG00000021719	Rgs7bp	A930030I01Rik|AI842293|D13Bwg1146e|R7bp	regulator of G-protein signalling 7 binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70175444-4	chr14	70175345	70175545	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145978, intron 1 of 9)	intron (NM_145978, intron 1 of 9)	1370.0	NM_001253736	213019.0	Mm.283968	NM_145978	ENSMUSG00000022090	Pdlim2	4732462F18Rik|Slim	PDZ and LIM domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-17776826-2	chr12	17776726	17776926	+	880.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361645, intron 2 of 4)	intron (NM_001361645, intron 2 of 4)	86017.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-8816832-4	chr17	8816759	8816959	+	847.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011866, intron 1 of 21)	intron (NM_011866, intron 1 of 21)	15114.0	NM_011866	23984.0	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	0.428483001485556	0.468391168818357	0.680519887986086	1.10863592187076	1.2427217239491	1.74958299051876	0.458467004216116	0.447348239727717	1.69661176364987	0.319328089743267	0.821951596143819
Merged-chr2-164876453-1	chr2	164876353	164876553	+	654.0	f1_balb.idr	Intergenic	Intergenic	-2915.0	NM_146129	228866.0	Mm.241134	NM_146129	ENSMUSG00000039849	Pcif1	2310022K11Rik|C20orf67|F730014I05Rik	PDX1 C-terminal inhibiting factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-30589023-2	chr16	30588923	30589123	+	913.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1434.0	NM_178069	224092.0	Mm.567	NM_178069	ENSMUSG00000022538	Lsg1	5830465I20|AA409273|D16Bwg1547e	large 60S subunit nuclear export GTPase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126848853-3	chr8	126848769	126848969	+	935.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_151740)	promoter-TSS (NR_151740)	-151.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180835384-4	chr1	180835292	180835492	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15759.0	NM_145943	208768.0	Mm.272625	NM_145943	ENSMUSG00000038806	Sde2	-	SDE2 telomere maintenance homolog (S. pombe)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-7400114-1	chr17	7400014	7400214	+	583.0	f1_c57bl6.idr	Intergenic	RMER12B|LTR|ERVK	-14809.0	NM_001142539	667055.0	Mm.327371	NM_001142539	ENSMUSG00000056133	Gm9992	-	predicted gene 9992	protein-coding	1.5836865405671	3.11623207309777	3.36584999323169	2.29388172880453	1.38921851366429	1.81226872586682	1.51337828386263	2.18039895155184	-2.21439931397818	0.0188545981221503	0.172572287302815
Merged-chr6-53064305-4	chr6	53064196	53064396	+	840.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173406, intron 1 of 4)	ORR1E|LTR|ERVL-MaLR	4328.0	NM_173406	231986.0	Mm.386865	NM_173406	ENSMUSG00000063568	Jazf1	AI591476|C820002C15|Jaz1|Tip27	JAZF zinc finger 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-39603477-3	chr1	39603362	39603562	+	815.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-26115.0	NM_001033135	67702.0	Mm.28614	NM_001033135	ENSMUSG00000048234	Rnf149	1600023E10Rik|AV037261|C76763|Gm15832|Greul4	ring finger protein 149	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30194051-4	chr7	30193934	30194134	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009795, exon 2 of 11)	exon (NM_009795, exon 2 of 11)	1119.0	NM_009795	12336.0	Mm.439782	NM_009795	ENSMUSG00000001794	Capns1	Capa-4|Capa4|Capn4|Cdps|Css1|D7Ertd146e	calpain, small subunit 1	protein-coding	5.07841398429657	5.1749205170264	5.32407132573803	4.93088330072129	5.00049288786323	5.08868418945161	5.44713466891698	4.57493241584109	-0.0867364230764122	0.785642729521164	0.998431161219273
Merged-chr19-5734845-2	chr19	5734824	5735024	+	822.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3192.0	NM_020491	56390.0	Mm.455818	NM_020491	ENSMUSG00000079478	Sssca1	1500016H19Rik|C184L	Sjogren syndrome/scleroderma autoantigen 1	protein-coding	0.526055637328892	0.779208901067368	0.446273049084509	0.255619523322681	1.14226037634267	0.270031680630902	0.262796389545186	0.431121017843529	0.472069761384242	0.794926813359234	1
Merged-chr12-111532436-2	chr12	111532336	111532536	+	561.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5665.0	NM_178041	217869.0	Mm.271222	NM_173363	ENSMUSG00000021282	Eif5	2810011H21Rik|D12Ertd549e	eukaryotic translation initiation factor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-34944345-2	chr2	34944245	34944445	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009421, intron 10 of 10)	intron (NM_009421, intron 10 of 10)	17427.0	NM_009421	22029.0	Mm.239514	NM_009421	ENSMUSG00000026875	Traf1	4732496E14Rik	TNF receptor-associated factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28432232-4	chr17	28432145	28432345	+	982.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010220, intron 3 of 10)	MER90a|LTR|ERV1	53904.0	NM_010220	14229.0	Mm.276405	NM_010220	ENSMUSG00000024222	Fkbp5	D17Ertd592e|Dit1|FKBP-5|FKBP51	FK506 binding protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65201671-4	chr9	65201580	65201780	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13010.0	NM_177460	214424.0	Mm.31129	NM_177460	ENSMUSG00000032392	Parp16	ARTD15|BC055447|C79952|PARP-16	poly (ADP-ribose) polymerase family, member 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-27355804-3	chr14	27355700	27355900	+	642.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289687, intron 1 of 9)	intron (NM_001289687, intron 1 of 9)	-5589.0	NM_001289688	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5117997-2	chr19	5117897	5118097	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045528, intron 1 of 15)	CpG	411.0	NR_045528	16594.0	Mm.271648	NM_008451	ENSMUSG00000024862	Klc2	8030455F02Rik|AW212649|KLC 2|KLC-2	kinesin light chain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-84820097-3	chr2	84819997	84820197	+	944.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024230, intron 1 of 7)	intron (NM_024230, intron 1 of 7)	2555.0	NM_024230	68678.0	Mm.33452	NM_024230	ENSMUSG00000027077	Smtnl1	1110030K22Rik|CHASM	smoothelin-like 1	protein-coding	0.000252647074502663	-0.213247912031012	-0.216414068425512	-0.218829345520546	0.00585933984198128	-0.0455721369076977	-0.063637237924885	0.145224143582178	1.90264341238566	0.388253520665494	1
Merged-chr19-47649365-2	chr19	47649265	47649465	+	717.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001290825, exon 49 of 54)	exon (NM_001290825, exon 49 of 54)	42677.0	NM_007732	12821.0	Mm.1225	NM_007732	ENSMUSG00000025064	Col17a1	BP180|Bpag|Bpag2	collagen, type XVII, alpha 1	protein-coding	-1.5061220274826	-1.47360709383584	-1.48343987814663	-1.49151681994238	-1.50383953926072	-1.47147628845725	-1.0170701920923	-1.49007105122263	2.15652851593596	0.535359572134045	1
Merged-chr5-91960684-2	chr5	91960584	91960784	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026557, intron 1 of 8)	intron (NM_026557, intron 1 of 8)	1872.0	NR_073442	68098.0	Mm.159453	NM_026557	ENSMUSG00000029397	Rchy1	ARNIP|CHIMP|Pirh2|Zfp363|Znf363	ring finger and CHY zinc finger domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-84549301-4	chr10	84549203	84549403	+	954.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040658, exon 3 of 4)	non-coding (NR_040658, exon 3 of 4)	4035.0	NR_040658	442847.0	Mm.128292	NR_040658	ENSMUSG00000097076	Platr7	C330046G13Rik	pluripotency associated transcript 7	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-147425623-2	chr4	147425523	147425723	+	740.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039209, intron 1 of 2)	L2|LINE|L2	-127654.0	NM_001014397	433804.0	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154	zinc finger protein 985	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-45018630-2	chr2	45018530	45018730	+	648.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355291, intron 3 of 9)	intron (NM_001355291, intron 3 of 9)	4547.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-142858636-2	chr2	142858536	142858736	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355123, intron 3 of 26)	intron (NM_001355123, intron 3 of 26)	42828.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-72188308-4	chr5	72188208	72188408	+	902.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15021.0	NR_003966	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-108309524-1	chr12	108309424	108309624	+	622.0	f0_balb.idr	intron (NM_001044380, intron 1 of 8)	L2c|LINE|L2	3254.0	NM_001044380	214305.0	Mm.36423	NM_001044380	ENSMUSG00000021260	Hhipl1	1600002O04Rik|AK129450|mKIAA1822	hedgehog interacting protein-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-117120012-4	chr5	117119904	117120104	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199685)	promoter-TSS (NM_001199685)	-125.0	NM_001199685	330177.0	Mm.24343	NM_183306	ENSMUSG00000061288	Taok3	2900006A08Rik|A130052D22|A430105I05Rik	TAO kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-135768776-4	chr7	135768669	135768869	+	999.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52390.0	NM_001081117	17345.0	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-100810390-2	chr15	100810292	100810492	+	780.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021530, intron 20 of 24)	intron (NM_021530, intron 20 of 24)	29138.0	NM_001347102	59033.0	Mm.209856	NM_021530	ENSMUSG00000023032	Slc4a8	AW493845|C230026C11|NDCBE|kNBC-3	solute carrier family 4 (anion exchanger), member 8	protein-coding	1.55476190482227	1.61246106925488	1.55659934097496	2.12002977171658	1.44692901032273	1.01672711185117	2.03421949791142	0.981694850973027	-0.880774996655399	0.46714271646722	0.923560086593492
Merged-chr19-18631403-4	chr19	18631307	18631507	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145497)	promoter-TSS (NM_145497)	406.0	NM_017375	20409.0	Mm.172222	NM_017375	ENSMUSG00000024725	Ostf1	C78236|SH3P2|Sh3d3	osteoclast stimulating factor 1	protein-coding	5.05304240577653	5.0000140124112	4.72171444398206	4.45852058296837	4.76085816538488	4.75931414801997	4.70960706778917	4.70790690518082	-0.116692607008823	0.731060001341544	0.998431161219273
Merged-chr7-75786194-4	chr7	75786102	75786302	+	827.395813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13D3|LTR|ERVK	-62136.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98680291-2	chr11	98680191	98680391	+	787.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-2263.0	NM_009439	22123.0	Mm.12194	NM_009439	ENSMUSG00000017221	Psmd3	AI255837|AntP91a|D11Bwg1349e|Psd3|Tstap91a	proteasome (prosome, macropain) 26S subunit, non-ATPase, 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-155083581-4	chr1	155083467	155083667	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_151545)	promoter-TSS (NR_151545)	-303.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-79742155-4	chr2	79742057	79742257	+	996.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110980, intron 2 of 2)	intron (NR_110980, intron 2 of 2)	34377.0	NM_001290743	75276.0	Mm.257373	NM_172420	ENSMUSG00000034683	Ppp1r1c	4930565M23Rik|4930579P15Rik	protein phosphatase 1, regulatory (inhibitor) subunit 1C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-67160295-2	chr6	67160195	67160395	+	732.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-106684.0	NM_001113566	66870.0	Mm.240490	NM_025814	ENSMUSG00000036371	Serbp1	1200009K13Rik|9330147J08Rik|AL022786|Pairbp1	serpine1 mRNA binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-157153429-4	chr2	157153343	157153543	+	999.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011249, intron 19 of 21)	intron (NM_011249, intron 19 of 21)	-18221.0	NM_018851	56045.0	Mm.248478	NM_018851	ENSMUSG00000027639	Samhd1	E330031J07Rik|Mg11	SAM domain and HD domain, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115643521-4	chr11	115643442	115643642	+	834.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008163)	TTS (NM_008163)	-15247.0	NM_001252395	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-192932040-4	chr1	192931940	192932140	+	986.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301370, intron 5 of 8)	intron (NM_001301370, intron 5 of 8)	-76288.0	NM_198247	214791.0	Mm.22806	NM_198247	ENSMUSG00000016262	Sertad4	4833404A09|C130018M11Rik	SERTA domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-65531842-2	chr3	65531742	65531942	+	878.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_178892, exon 2 of 6)	exon (NM_178892, exon 2 of 6)	-2428.0	NR_027955	71004.0	Mm.475465	NM_001033527	ENSMUSG00000074580	4931440P22Rik	-	RIKEN cDNA 4931440P22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-75297050-3	chr4	75296952	75297152	+	700.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-18760.0	NM_025849	66928.0	Mm.24332	NM_025849	ENSMUSG00000028398	Dmac1	1700027K24Rik|3110001D03Rik|Tmem261	distal membrane arm assembly complex 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-116221385-5	chr4	116221367	116221567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355584)	promoter-TSS (NM_001355584)	51.0	NM_001355585	18710.0	Mm.253819	NM_181585	ENSMUSG00000028698	Pik3r3	AA414954|p55|p55pik	phosphoinositide-3-kinase regulatory subunit 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-65389827-3	chr5	65389708	65389908	+	709.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011292, intron 4 of 7)	intron (NM_011292, intron 4 of 7)	1623.0	NM_011292	20005.0	Mm.300271	NM_011292	ENSMUSG00000047215	Rpl9	-	ribosomal protein L9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-12268259-2	chr15	12268159	12268359	+	578.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356498, intron 15 of 15)	intron (NM_001356498, intron 15 of 15)	-53237.0	NM_025673	66629.0	Mm.157655	NM_025673	ENSMUSG00000022200	Golph3	4733401N08Rik|5730410D03Rik|AW413496	golgi phosphoprotein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-69533388-2	chr17	69533288	69533488	+	697.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	94062.0	NM_001145192	320722.0	Mm.400254	NM_001145192	ENSMUSG00000091636	Akain1	A330050F15Rik	A kinase (PRKA) anchor inhibitor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-19317265-2	chr2	19317165	19317365	+	737.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17A-int|LTR|ERVK	-27052.0	NR_126563	108871.0	Mm.107666	NR_126563		4930447M23Rik	-	RIKEN cDNA 4930447M23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-55642546-4	chr12	55642449	55642649	+	995.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003719, intron 36 of 39)	intron (NM_001003719, intron 36 of 39)	43632.0	NM_020287	56856.0	Mm.114886	NM_020287	ENSMUSG00000045440	Insm2	Mlt1	insulinoma-associated 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-107084416-3	chr4	107084310	107084510	+	829.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_175471, exon 9 of 9)	3' UTR (NM_175471, exon 9 of 9)	-12481.0	NM_172873	242603.0	Mm.257231	NM_172873	ENSMUSG00000047636	Cdcp2	D030010E02Rik	CUB domain containing protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-42129740-2	chr19	42129640	42129840	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027106)	promoter-TSS (NM_027106)	-747.0	NM_027106	69534.0	Mm.30060	NM_027106	ENSMUSG00000018821	Avpi1	2310008N12Rik|AA410041|VIT32|esu|mVIT32	arginine vasopressin-induced 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76765960-4	chr15	76765855	76766055	+	807.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198420, intron 1 of 10)	intron (NM_198420, intron 1 of 10)	-42110.0	NM_176828	223665.0	Mm.291713	NM_145472	ENSMUSG00000116138	C030006K11Rik	1110033I13Rik	RIKEN cDNA C030006K11 gene	protein-coding	2.01020803816978	2.27089181821734	1.35462404515899	1.10146050589945	1.93499498273357	2.28875314884155	1.3633911381299	1.80816986636415	0.305930807847479	0.781452122518812	0.998431161219273
Merged-chr17-13659361-4	chr17	13659315	13659515	+	985.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER21C|LTR|ERVL	-101126.0	NR_151731	17356.0	Mm.59167	NM_010806	ENSMUSG00000068036	Afdn	5033403D15Rik|AF6|Af-6|Afadin|Gm314|I-afadin|Mllt4|S-afadin	afadin, adherens junction formation factor	protein-coding	1.6883900685768	1.59863344644099	0.86844107727982	1.05653718029458	1.70434921286126	0.887204444413789	1.0886718891822	1.80335899778462	0.287111706869998	0.829672255503746	0.998431161219273
Merged-chr4-137609443-3	chr4	137609348	137609548	+	907.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355588, intron 6 of 26)	intron (NM_001355588, intron 6 of 26)	15276.0	NM_130879	170707.0	Mm.218478	NM_130879	ENSMUSG00000043411	Usp48	2810449C13Rik|AI115503|BC021769|D330022K21Rik|Usp31	ubiquitin specific peptidase 48	protein-coding	0.752069240756618	1.35931517980013	0.987841082785387	1.68571649838886	1.20781370721928	1.73583663272822	0.783366315709249	1.13302831130577	0.0486726344484554	0.971970484833825	0.998431161219273
Merged-chr4-6388694-4	chr4	6388591	6388791	+	913.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001098227, intron 6 of 8)	intron (NM_001098227, intron 6 of 8)	23011.0	NM_001098227	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-40081231-4	chr1	40081123	40081323	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_037980, intron 3 of 3)	MTC|LTR|ERVL-MaLR	-3491.0	NM_010555	16178.0	Mm.1349	NM_010555	ENSMUSG00000026073	Il1r2	CD121b|Il1r-2	interleukin 1 receptor, type II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-51822473-2	chr12	51822373	51822573	+	879.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144788, intron 2 of 42)	B2_Mm2|SINE|B2	7063.0	NM_144788	207304.0	Mm.249391	NM_144788	ENSMUSG00000035247	Hectd1	A630086P08Rik|AI844876|b2b327Clo|opm	HECT domain E3 ubiquitin protein ligase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-145802193-1	chr6	145802093	145802293	+	757.75	f0_balb.idr	Intergenic	Intergenic	-6190.0	NM_027760	71323.0	Mm.158669	NM_027760	ENSMUSG00000030259	Rassf8	5133400D11Rik|AA815821|AW123240|Hoj1|mHoj-1	Ras association (RalGDS/AF-6) domain family (N-terminal) member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67271863-4	chr10	67271763	67271963	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001036293, intron 2 of 3)	intron (NM_001036293, intron 2 of 3)	13418.0	NM_001036293	641340.0	Mm.136223	NM_001036293	ENSMUSG00000075000	Nrbf2	NRBF-2	nuclear receptor binding factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-62786792-4	chr16	62786684	62786884	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178925)	promoter-TSS (NM_178925)	-68.0	NM_178925	106338.0	Mm.26321	NM_178925	ENSMUSG00000050312	Nsun3	6720484A09Rik|AU022521	NOL1/NOP2/Sun domain family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6299678-4	chr19	6299568	6299768	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010119, exon 5 of 5)	3' UTR (NM_010119, exon 5 of 5)	-6789.0	NM_001033342	240505.0	Mm.329622	NM_001033342	ENSMUSG00000024769	Cdc42bpg	BC046418|MRCKgamma	CDC42 binding protein kinase gamma (DMPK-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-74578976-4	chr2	74578882	74579082	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027133)	promoter-TSS (NM_027133)	-34.0	NM_027133	69605.0	Mm.156113	NM_027133	ENSMUSG00000009207	Lnpk	2310011O18Rik|4921514L11Rik|9530051D01Rik|AI666268|Lnp|Lnpk1|Ul|ulnaless	lunapark, ER junction formation factor	protein-coding	4.81775847029545	4.31038134034691	4.71560815095972	4.40186657175284	4.97278899774957	4.80264723194404	4.70346296526778	5.1859840869737	0.427604479241269	0.217199439822724	0.707668122771131
Merged-chr9-25514391-2	chr9	25514291	25514491	+	551.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 2 of 7)	intron (NM_026189, intron 2 of 7)	32794.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-137871795-4	chr5	137871704	137871904	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024932)	promoter-TSS (NM_001024932)	-46.0	NM_001024932	545812.0	Mm.332769	NM_001024932	ENSMUSG00000066682	Pilrb2	EG545812	paired immunoglobin-like type 2 receptor beta 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80200137-3	chr7	80200013	80200213	+	984.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360135, intron 1 of 13)	intron (NM_001360135, intron 1 of 13)	1672.0	NM_001360135	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-61152315-3	chr19	61152201	61152401	+	624.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR50A|LTR|ERVK	-11461.0	NR_131954	414758.0	Mm.100056	NM_001001737	ENSMUSG00000074733	Zfp950	5830428H23Rik|AU016073|BC055757|Gm34518|Zfp826|mszf84	zinc finger protein 950	protein-coding	1.93720115740763	1.81841444485353	1.75123997666547	0.941180197133298	1.39566412988705	1.56776089462863	1.35960697259148	0.943528544818577	-1.16362392789462	0.351409639098215	0.851869250625437
Merged-chr3-100485712-2	chr3	100485612	100485812	+	842.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001142952, intron 1 of 1)	intron (NM_001142952, intron 1 of 1)	3480.0	NM_001142952	74645.0	Mm.226900	NM_001142952	ENSMUSG00000044468	Fam46c	4930431B09Rik|AI449797	family with sequence similarity 46, member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191311195-1	chr1	191311095	191311295	+	787.0	f1_c57bl6.idr	intron (NM_025424, intron 2 of 3)	intron (NM_025424, intron 2 of 3)	6923.0	NM_025424	66208.0	Mm.46444	NM_025424	ENSMUSG00000037499	Nenf	1110060M21Rik|SCIRP10|Spuf	neuron derived neurotrophic factor	protein-coding	0.533434679784166	-0.240310523460045	-0.244985571993814	-0.248593071668813	-0.105831630829142	-0.239256789169377	-0.243954392789662	0.186228445234292	-0.77290464023805	0.748870265321283	1
Merged-chr12-111691426-4	chr12	111691325	111691525	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13320.0	NM_177374	328162.0	Mm.425747	NM_177374	ENSMUSG00000060950	Trmt61a	6720458F09Rik|AI606093|Gcd14|Trm61	tRNA methyltransferase 61A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-31030169-2	chr7	31030069	31030269	+	823.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2B2|LTR|ERVL	10148.0	NR_106017	102465635.0		NR_106017	ENSMUSG00000098783	Mir7050	Gm27578|mmu-mir-7050	microRNA 7050	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-43352026-4	chr11	43351927	43352127	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22434.0	NR_029558	387164.0		NR_029558	ENSMUSG00000065601	Mir146	Mirn146|miR-146a|mmu-mir-146	microRNA 146	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-57924261-4	chr15	57924170	57924370	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356310, intron 3 of 19)	L1M2|LINE|L1	12071.0	NM_001356310	210544.0	Mm.390835	NM_199300	ENSMUSG00000022364	Tbc1d31	4B3|D330013L20Rik|Gm85|Wdr67	TBC1 domain family, member 31	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-128268962-2	chr8	128268862	128269062	+	689.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9263.0	NR_105822	102465212.0		NR_105822	ENSMUSG00000099326	Mir21c	Gm28013|mmu-mir-21c	microRNA 21c	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-75678440-4	chr15	75678335	75678535	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028404, intron 1 of 13)	intron (NM_028404, intron 1 of 13)	365.0	NM_001355589	72960.0	Mm.182401	NM_028404	ENSMUSG00000000934	Top1mt	2900052H09Rik	DNA topoisomerase 1, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-63936479-4	chr7	63936351	63936551	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021366, intron 1 of 1)	intron (NM_021366, intron 1 of 1)	2464.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-180105178-2	chr2	180105078	180105278	+	772.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133849)	promoter-TSS (NM_133849)	-771.0	NM_133849	99296.0	Mm.285360	NM_133849	ENSMUSG00000039059	Hrh3	AW049250|H3R|HH3R	histamine receptor H3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-48896410-1	chr14	48896310	48896510	+	1000.0	f0_balb.idr	Intergenic	LTR33A_|LTR|ERVL	17537.0	NR_033783	66770.0	Mm.136954	NR_033783	ENSMUSG00000115008	4933429O19Rik	1700031B11Rik	RIKEN cDNA 4933429O19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-34177087-4	chr6	34176984	34177184	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021435)	promoter-TSS (NM_021435)	-30.0	NM_021435	58246.0	Mm.245527	NM_021435	ENSMUSG00000018999	Slc35b4	4930474D06Rik|AB041549|AW494345	solute carrier family 35, member B4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135015677-3	chr5	135015576	135015776	+	935.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2519.0	NR_026688	69812.0	Mm.18422	NR_026688	ENSMUSG00000085042	Abhd11os	2010001M06Rik|AI462243|Wbscr26|Wnscr26	abhydrolase domain containing 11, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-108300998-4	chr10	108300891	108301091	+	785.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31198.0	NM_054056	114774.0	Mm.391419	NM_054056	ENSMUSG00000035873	Pawr	2310001G03Rik|PAR4|Par-4	PRKC, apoptosis, WT1, regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-59531977-2	chr11	59531877	59532077	+	617.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	-9592.0	NM_001359638	216799.0	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36765315-2	chr18	36765215	36765415	+	747.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_173383, exon 3 of 4)	exon (NM_173383, exon 3 of 4)	899.0	NM_173383	213236.0	Mm.234464	NM_173383	ENSMUSG00000044595	Dnd1	BC034897|RBMS4|Ter	DND microRNA-mediated repression inhibitor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30424547-2	chr7	30424495	30424695	+	684.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_172142, intron 3 of 10)	B1F|SINE|Alu	1320.0	NM_172142	243910.0	Mm.386878	NM_172142	ENSMUSG00000036931	Nfkbid	I-kappa-B-delta|IkappaBNS|ikB-delta	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	protein-coding	0.564169400604321	0.635591475379099	0.613300618406561	0.595403074622184	1.00146051712807	1.36486617651002	2.51902728668849	1.85797000029029	5.38502167146355	0.000332501380017794	0.0079469154530946
Merged-chr9-24506530-2	chr9	24506430	24506630	+	880.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3390.0	NM_172920	244745.0	Mm.38526	NM_172920	ENSMUSG00000043067	Dpy19l1	1100001I19Rik|6030402K12|AI225861|AW558481	dpy-19-like 1 (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-38242994-2	chr16	38242894	38243094	+	606.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_019827, exon 11 of 11)	3' UTR (NM_019827, exon 11 of 11)	51830.0	NM_010936	18171.0	Mm.8509	NM_010936	ENSMUSG00000022809	Nr1i2	PXR|PXR.1|PXR.2|PXR1|SXR|mPXR	nuclear receptor subfamily 1, group I, member 2	protein-coding	1.51095180474236	0.759551752563315	1.76567784869384	0.731714600887101	1.52628599102924	0.763011143793177	1.78273201413097	0.733875264080076	0.0413437283248513	0.978565708417899	0.998431161219273
Merged-chr9-18293277-5	chr9	18293035	18293235	+	854.0150150000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025844, intron 1 of 10)	intron (NM_025844, intron 1 of 10)	868.0	NM_025844	66917.0	Mm.103534	NM_025844	ENSMUSG00000001774	Chordc1	1110001O09Rik|AA409036|Chp-1|morgana	cysteine and histidine-rich domain (CHORD)-containing, zinc-binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-41477323-4	chr10	41477232	41477432	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358838)	promoter-TSS (NM_001358838)	-678.0	NM_001358838	171580.0	Mm.290431	NM_138315	ENSMUSG00000019823	Mical1	MICAL|MICAL-1|Nical	microtubule associated monooxygenase, calponin and LIM domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-74823685-2	chr18	74823551	74823751	+	831.25	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	44439.0	NM_177470	52538.0	Mm.245724	NM_177470	ENSMUSG00000036880	Acaa2	0610011L04Rik|AI255831|AI265397|D18Ertd240e	acetyl-Coenzyme A acyltransferase 2 (mitochondrial 3-oxoacyl-Coenzyme A thiolase)	protein-coding	3.01564280134458	4.66172942692499	2.45265147768808	2.19807323772085	2.9563557298306	3.33495014453206	2.29367692151781	2.80432207436954	-0.934606156750382	0.218448923437806	0.709602753199798
Merged-chr15-64512887-1	chr15	64512787	64512987	+	694.0	f0_balb.idr	Intergenic	Intergenic	-129968.0	NM_010026	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	1.1527870779503	1.93282619519229	1.47937669742428	2.0894327781225	2.29648361227413	2.99480999492256	2.03531283984861	2.21730048290585	1.81938286413956	0.0635634127923309	0.37568168802088
Merged-chr8-16420663-2	chr8	16420563	16420763	+	571.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_053171, intron 7 of 69)	intron (NM_053171, intron 7 of 69)	-251825.0	NR_037214	100526464.0		NR_037214	ENSMUSG00000093142	Mir3106	mir-3106|mmu-mir-3106	microRNA 3106	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-32387000-2	chr17	32386900	32387100	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_033525, intron 2 of 10)	L2b|LINE|L2	817.0	NM_212438	22404.0	Mm.274948	NM_011717	ENSMUSG00000024050	Wiz	-	widely-interspaced zinc finger motifs	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-51498676-4	chr1	51498551	51498751	+	865.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15-int|LTR|ERVL	-20252.0	NM_001310549	109019.0	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80387783-4	chr10	80387689	80387889	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198615)	promoter-TSS (NM_198615)	-138.0	NM_198615	237400.0	Mm.268389	NM_198615	ENSMUSG00000048696	Mex3d	BC059858|Rkhd1	mex3 RNA binding family member D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-100638990-2	chr15	100638890	100639090	+	881.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2050.0	NM_001033872	207818.0	Mm.26282	NM_174992	ENSMUSG00000053559	Smagp	-	small cell adhesion glycoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-76326600-3	chr18	76326499	76326699	+	839.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	64154.0	NM_001311070	17126.0	Mm.152699	NM_010754	ENSMUSG00000024563	Smad2	7120426M23Rik|Madh2|Madr2|Smad-2|mMad2	SMAD family member 2	protein-coding	2.76093697235715	3.99701674822828	3.93391946265274	2.64012197018139	4.29804257671583	3.94693604860364	5.65413492914074	4.66211046952635	1.76190600921872	0.00113592047809513	0.0214288897738764
Merged-chr18-38212358-3	chr18	38212269	38212469	+	807.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2607.0	NM_029357	75599.0	Mm.36560	NM_029357	ENSMUSG00000051375	Pcdh1	2010005A06Rik|AI585920	protocadherin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-89338855-4	chr6	89338753	89338953	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008881, intron 9 of 31)	intron (NM_008881, intron 9 of 31)	23760.0	NM_008881	18844.0	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4441563-3	chr19	4441528	4441728	+	728.694458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045989, intron 1 of 4)	intron (NR_045989, intron 1 of 4)	2069.0	NR_045989	319314.0	Mm.393810	NR_045989	ENSMUSG00000087132	A930001C03Rik	-	RIKEN cDNA A930001C03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-8517583-2	chr12	8517479	8517679	+	942.1666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-17570.0	NM_007483	11852.0	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	1.36931197046432	0.784833597285163	1.27197055640959	1.35004183921555	0.750590426943823	1.33172625231771	1.51735448774818	0.950791199879796	-0.164879239320103	0.906094776994483	0.998431161219273
Merged-chr7-112023499-7	chr7	112023418	112023618	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177249)	promoter-TSS (NM_177249)	12.0	NM_177249	74996.0	Mm.16974	NM_133758	ENSMUSG00000059263	Usp47	4930502N04Rik|A630020C16Rik	ubiquitin specific peptidase 47	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-77442849-4	chr11	77442750	77442950	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177710, intron 13 of 14)	intron (NM_177710, intron 13 of 14)	-21063.0	NM_139129	216961.0	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-35495569-4	chr8	35495460	35495660	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026067)	promoter-TSS (NM_026067)	-27.0	NM_026067	67276.0	Mm.207534	NM_026067	ENSMUSG00000031527	Eri1	3'hexo|3110010F15Rik|Thex1|eri-1	exoribonuclease 1	protein-coding	5.43178678085933	5.25163346175853	5.80348905221398	4.18506409885102	5.44708001721264	5.39422776479664	5.598683184291	5.60365385229176	0.264873959807497	0.425949535686974	0.902023751857747
Merged-chr1-161974613-3	chr1	161974457	161974657	+	627.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001204904, intron 1 of 6)	intron (NM_001204904, intron 1 of 6)	5079.0	NM_001204904	75368.0	Mm.108728	NM_001204904	ENSMUSG00000086277	4930558K02Rik	-	RIKEN cDNA 4930558K02 gene	protein-coding	1.29645133174006	1.70960525534511	0.972203687267899	0.752389142375628	1.30874668430402	1.72478179696903	0.97894306134759	0.754250743030264	0.0401920156001222	0.977059628073367	0.998431161219273
Merged-chr10-117063466-2	chr10	117063366	117063566	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_001358767)	promoter-TSS (NM_001358767)	-91.0	NM_001358767	12461.0	Mm.247788	NM_007636	ENSMUSG00000034024	Cct2	Cctb	chaperonin containing Tcp1, subunit 2 (beta)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83066766-1	chr6	83066666	83066866	+	593.0	f1_c57bl6.idr	3' UTR (NM_033606, exon 12 of 12)	3' UTR (NM_033606, exon 12 of 12)	3459.0	NM_009392	21909.0	Mm.37	NM_009392	ENSMUSG00000068327	Tlx2	Enx|Hox11L.1|Hox11l1|NCX|Ncx1|Tlx1l1|Tlx1l2	T cell leukemia, homeobox 2	protein-coding	-0.445723071688749	-0.710026324588651	-0.713568545316525	0.0196189857887833	-0.720167606610576	-0.709228091018644	-0.712787141249951	-0.715824871459513	-3.29760827211211	0.245666276545393	1
Merged-chr8-120745452-4	chr8	120745352	120745552	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301811, intron 3 of 8)	intron (NM_001301811, intron 3 of 8)	6813.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-74901069-2	chr3	74900969	74901169	+	699.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1C|Other|Other	242703.0	NM_001310529	213234.0	Mm.80075	NM_172515	ENSMUSG00000034151	Zbbx	4931432L23	zinc finger, B-box domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-109257792-4	chr4	109257685	109257885	+	972.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22153.0	NM_001033226	108802.0	Mm.318248	NM_001033226	ENSMUSG00000028558	Calr4	4933403L16Rik|AU017583	calreticulin 4	protein-coding	2.9527887914914	4.5259272406068	3.21383029652703	3.3012141886032	3.44527566475352	2.70233330337015	3.50754261984414	2.51584282689976	-0.827894591088904	0.198970202231563	0.682589921761618
Merged-chr7-133154129-4	chr7	133154045	133154245	+	883.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25894.0	NR_046279	74970.0	Mm.491044	NR_046279	ENSMUSG00000109816	4930483O08Rik	-	RIKEN cDNA 4930483O08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-89772072-2	chr10	89771972	89772172	+	668.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_029166, intron 1 of 20)	intron (NM_029166, intron 1 of 20)	27081.0	NM_029166	75089.0	Mm.268922	NM_029166	ENSMUSG00000019951	Uhrf1bp1l	2010319N22Rik|4930506D01Rik|AA589495|C80672|E030041M21Rik|mKIAA0701	UHRF1 (ICBP90) binding protein 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-101516258-3	chr14	101516155	101516355	+	937.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081278, intron 1 of 18)	intron (NM_001081278, intron 1 of 18)	92936.0	NM_001081278	210789.0	Mm.320639	NM_173380	ENSMUSG00000033083	Tbc1d4	5930406J04Rik|A930035N22|AV295684|As160	TBC1 domain family, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-124915429-2	chr4	124915329	124915529	+	622.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001256432, exon 16 of 17)	exon (NM_001256432, exon 16 of 17)	-20647.0	NR_040651	73628.0	Mm.398337	NR_040651	ENSMUSG00000085263	1700125G02Rik	-	RIKEN cDNA 1700125G02 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166630052-2	chr2	166629952	166630152	+	895.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 5 of 39)	intron (NM_177782, intron 5 of 39)	65530.0	NR_152154	433503.0	Mm.491336	NR_152154		Gm29679	-	predicted gene, 29679	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-50650030-4	chr15	50649906	50650106	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	239043.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-145247304-4	chr6	145247197	145247397	+	919.56665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021284, intron 1 of 4)	intron (NM_021284, intron 1 of 4)	2934.0	NM_021284	16653.0	Mm.383182	NM_021284	ENSMUSG00000030265	Kras	AI929937|K-Ras|K-Ras 2|K-ras|Ki-ras|Kras-2|Kras2|c-K-ras|c-Ki-ras|p21B|ras	Kirsten rat sarcoma viral oncogene homolog	protein-coding	-0.0220367214211114	-0.460000695061289	-0.463509662969598	0.0418540717256264	-0.331733033437172	-0.459207544826824	-0.462737093765974	-0.465735720424309	-2.51806404329225	0.330531205971962	1
Merged-chr7-90033442-2	chr7	90033342	90033542	+	707.666626	f1_balb.idr|f1_c57bl6.idr	intron (NR_110365, intron 1 of 5)	intron (NR_110365, intron 1 of 5)	4283.0	NR_110364	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-68301016-1	chr18	68300916	68301116	+	1000.0	f0_c57.idr	promoter-TSS (NM_153794)	promoter-TSS (NM_153794)	596.0	NM_001361003	67897.0	Mm.27544	NM_026440	ENSMUSG00000009535	Rnmt	2610002P10Rik|AI848273|Rg7mt1|mKIAA0398	RNA (guanine-7-) methyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-117147707-1	chr5	117147607	117147807	+	860.0	f1_balb.idr	intron (NM_001081308, intron 1 of 19)	intron (NM_001081308, intron 1 of 19)	14119.0	NM_183306	330177.0	Mm.24343	NM_183306	ENSMUSG00000061288	Taok3	2900006A08Rik|A130052D22|A430105I05Rik	TAO kinase 3	protein-coding	0.402398084910173	1.38206775735901	0.639240848880529	0.417129190005187	0.982047008616691	0.439424016537452	1.42342892386659	0.418658899473459	0.442342220084909	0.801686534333244	0.998431161219273
Merged-chr4-116558434-2	chr4	116558334	116558534	+	714.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029868, intron 1 of 11)	intron (NM_029868, intron 1 of 11)	707.0	NM_029868	77110.0	Mm.41715	NM_029868	ENSMUSG00000034042	Gpbp1l1	5330440M15Rik|BC002292	GC-rich promoter binding protein 1-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-106574851-2	chr8	106574751	106574951	+	589.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12292.0	NR_045470	68692.0	Mm.416843	NR_045470	ENSMUSG00000099139	1110028F18Rik	-	RIKEN cDNA 1110028F18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-6476666-2	chr1	6476566	6476766	+	773.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10565.0	NM_001244693	240690.0	Mm.234612	NM_173868	ENSMUSG00000033740	St18	AV348974|Myt3|NZF-3|Nzf3|mKIAA0535	suppression of tumorigenicity 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-32414973-2	chr18	32414873	32415073	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_009668, exon 7 of 19)	exon (NM_009668, exon 7 of 19)	-36689.0	NR_045403	402767.0	Mm.385109	NR_045403	ENSMUSG00000097413	A830052D11Rik	-	RIKEN cDNA A830052D11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-44698184-3	chr10	44698086	44698286	+	789.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-239438.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115167142-1	chr11	115167042	115167242	+	739.5	f1_c57bl6.idr	intron (NM_012030, intron 1 of 5)	intron (NM_012030, intron 1 of 5)	3801.0	NM_012030	26941.0	Mm.27842	NM_012030	ENSMUSG00000020733	Slc9a3r1	EBP-50|NHE-RF|NHERF-1|NHERF1	solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-69411044-1	chr12	69410944	69411144	+	702.0	f0_balb.idr	Intergenic	Intergenic	38894.0	NM_007481	11845.0	Mm.27308	NM_007481	ENSMUSG00000044147	Arf6	AI788669|AW496366	ADP-ribosylation factor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-107587786-1	chr8	107587686	107587886	+	698.0	f0_c57.idr	intron (NM_010817, intron 1 of 6)	intron (NM_010817, intron 1 of 6)	696.0	NM_010817	17463.0	Mm.18347	NM_010817	ENSMUSG00000039067	Psmd7	AW107203|Mov-34|Mov34	proteasome (prosome, macropain) 26S subunit, non-ATPase, 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-49185358-2	chr13	49185258	49185458	+	640.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-2189.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-103175001-1	chr9	103174901	103175101	+	658.0	f0_balb.idr	intron (NM_173781, intron 7 of 7)	intron (NM_173781, intron 7 of 7)	27064.0	NM_009275	20818.0	Mm.273053	NM_009275	ENSMUSG00000032553	Srprb	AA409543	signal recognition particle receptor, B subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-87906188-4	chr3	87906095	87906295	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001331052)	promoter-TSS (NM_001331052)	-126.0	NM_008231	15191.0	Mm.292208	NM_008231	ENSMUSG00000004897	Hdgf	AI118077|D3Ertd299e	hepatoma-derived growth factor	protein-coding	6.09392598339346	5.73831855449039	5.87343357773802	6.26845146004082	6.08904824894236	5.4254026159494	6.13795992656244	5.78403499231188	-0.132513228863599	0.598202047666322	0.972303230574462
Merged-chr14-60273529-4	chr14	60273402	60273602	+	965.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144843, intron 1 of 13)	intron (NM_144843, intron 1 of 13)	8297.0	NM_144843	219135.0	Mm.247007	NM_144843	ENSMUSG00000021987	Mtmr6	4022440C11Rik|AI428804|AU041072	myotubularin related protein 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-107031712-3	chr3	107031644	107031844	+	819.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4418.0	NM_008418	16491.0	Mm.30640	NM_008418	ENSMUSG00000047959	Kcna3	Kca1-3|Kv1.3|Mk-3	potassium voltage-gated channel, shaker-related subfamily, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-96862105-4	chr11	96861999	96862199	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_019877)	TTS (NM_019877)	11706.0	NR_029562	387170.0		NR_029562	ENSMUSG00000065515	Mir152	Mirn152|mir-152|mmu-mir-152	microRNA 152	ncRNA	5.63401345284707	5.08687435624627	6.0321373884454	5.66558926414536	5.69148689631739	5.24695358755553	5.85970259327321	6.0505530641436	0.111422685582692	0.69556318709343	0.997923870727665
Merged-chr7-109541838-3	chr7	109541686	109541886	+	742.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001326, intron 6 of 19)	intron (NM_001001326, intron 6 of 19)	21654.0	NR_028079	100302499.0	Mm.482651	NR_028079	ENSMUSG00000065016	Snora3	MBI-28	small nucleolar RNA, H/ACA box 3	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-4068841-3	chr18	4068760	4068960	+	682.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-96972.0	NM_026092	67328.0	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127194697-3	chr10	127194627	127194827	+	868.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045715)	promoter-TSS (NR_045715)	-522.0	NR_045715	100038591.0	Mm.441071	NR_045715	ENSMUSG00000097331	F420014N23Rik	-	RIKEN cDNA F420014N23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5635417-1	chr19	5635317	5635517	+	668.0	f1_c57bl6.idr	Intergenic	RMER4A|LTR|ERVK	-2073.0	NM_009045	19697.0	Mm.249966	NM_009045	ENSMUSG00000024927	Rela	p65	v-rel reticuloendotheliosis viral oncogene homolog A (avian)	protein-coding	-0.848598212984207	-1.0872589546502	-1.09814238002429	-1.10530268522372	-1.10789828006858	-1.08490047097035	-1.09567861107749	-0.683615635754006	0.687562602464998	0.835498131509325	1
Merged-chr6-29275030-2	chr6	29274930	29275130	+	560.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_023516, exon 2 of 2)	3' UTR (NM_023516, exon 2 of 2)	2404.0	NM_023516	69573.0	Mm.45161	NM_023516	ENSMUSG00000043421	Hilpda	2310016C08Rik|AW049004|Hig2	hypoxia inducible lipid droplet associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-74287482-2	chr1	74287382	74287582	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_027154)	TTS (NM_027154)	2448.0	NM_001039509	56695.0	Mm.384726	NM_019999	ENSMUSG00000026179	Pnkd	2210013N15Rik|2810403H05Rik|AI854243|Brp17|MNCb-5687|MR-1|Tahccp2	paroxysmal nonkinesiogenic dyskinesia	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-96751725-4	chr10	96751610	96751810	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	134709.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-37702895-1	chr19	37702795	37702995	+	581.0	f0_balb.idr	Intergenic	Intergenic	5087.0	NM_007811	13082.0	Mm.42230	NM_007811	ENSMUSG00000024987	Cyp26a1	Cyp26|P450RA|P450RAI|RAH	cytochrome P450, family 26, subfamily a, polypeptide 1	protein-coding	0.676621854528369	0.17426989831187	0.166444204353718	0.633070871469411	1.22178459408179	0.17602390555271	0.168176572009458	0.16142207830499	0.575745059537921	0.780119634612013	1
Merged-chr15-36606041-2	chr15	36605941	36606141	+	588.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_008774, intron 1 of 14)	intron (NM_008774, intron 1 of 14)	2932.0	NM_008774	18458.0	Mm.371570	NM_008774	ENSMUSG00000022283	Pabpc1	PABP|Pabp1|PabpI|Pabpl1|ePAB	poly(A) binding protein, cytoplasmic 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-32167767-2	chr16	32167667	32167867	+	686.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-2173.0	NM_001347181	224109.0	Mm.33498	NM_146069	ENSMUSG00000052384	Nrros	E430025L02Rik|Lrcc33|Lrrc33	negative regulator of reactive oxygen species	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-152080229-1	chr2	152080129	152080329	+	551.0	f1_c57bl6.idr	Intergenic	(TAA)n|Simple_repeat|Simple_repeat	-1300.0	NM_001160410	545474.0	Mm.214317	NM_001160410	ENSMUSG00000060257	Scrt2	AW060659	scratch family zinc finger 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-137632510-2	chr5	137632410	137632610	+	847.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_033148, intron 1 of 21)	intron (NR_033148, intron 1 of 21)	3387.0	NR_033148	100316903.0	Mm.200763	NR_033148		Gm20605	Lrch4-sap25	predicted gene 20605	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30421713-4	chr7	30421655	30421855	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360906)	promoter-TSS (NM_001360906)	24.0	NM_001360906	243910.0	Mm.386878	NM_172142	ENSMUSG00000036931	Nfkbid	I-kappa-B-delta|IkappaBNS|ikB-delta	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	protein-coding	5.81117751430044	5.63108640436291	5.38185653490995	5.28093358502847	5.4865462053962	5.37794400749738	5.3553844708876	5.52397531163411	-0.120336763997956	0.656402561177686	0.988505467120973
Merged-chr6-117190628-3	chr6	117190523	117190723	+	703.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22088.0	NM_021704	20315.0	Mm.303231	NM_013655	ENSMUSG00000061353	Cxcl12	Pbsf|Scyb12|Sdf1|Tlsf|Tpar1	chemokine (C-X-C motif) ligand 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-90259183-4	chr16	90259080	90259280	+	921.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346799, intron 4 of 19)	intron (NM_001346799, intron 4 of 19)	25306.0	NM_001346799	224432.0	Mm.439811	NM_178923	ENSMUSG00000022983	Scaf4	AA517739|Sfrs15|Sra4|Srsf15	SR-related CTD-associated factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141621448-2	chr7	141621348	141621548	+	885.25	f1_balb.idr|f1_c57bl6.idr	TTS (NR_106030)	TTS (NR_106030)	747.0	NR_106030	102466798.0		NR_106030	ENSMUSG00000098759	Mir7063	Gm27654|mmu-mir-7063	microRNA 7063	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-71849613-4	chr11	71849473	71849673	+	965.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	90549.0	NR_045942	73816.0	Mm.390391	NR_045942	ENSMUSG00000085528	4930401O10Rik	-	RIKEN cDNA 4930401O10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-61336868-2	chr10	61336768	61336968	+	629.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013753, intron 18 of 19)	intron (NM_013753, intron 18 of 19)	39032.0	NM_011073	18646.0	Mm.240313	NM_011073	ENSMUSG00000037202	Prf1	Pfn|Pfp|Prf-1	perforin 1 (pore forming protein)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-170133520-4	chr2	170133368	170133568	+	989.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159683, intron 1 of 6)	CpG	-2248.0	NM_001033299	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-87361342-4	chr3	87361221	87361421	+	805.474976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009690, intron 2 of 5)	intron (NM_009690, intron 2 of 5)	3440.0	NM_009690	11801.0	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	2.52649100498682	2.01688871288508	2.23909365690468	1.2666815892208	2.9312532613619	2.46487512486067	1.3024085722093	2.59779077705219	0.796005193703476	0.42667069370977	0.902113777572219
Merged-chr8-25151100-3	chr8	25150973	25151173	+	643.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8160.0	NR_106187	102467006.0		NR_106187	ENSMUSG00000099142	Mir8108	Gm27484|mmu-mir-8108	microRNA 8108	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-107511039-4	chr11	107510947	107511147	+	792.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31519.0	NM_025894	66997.0	Mm.491171	NM_025894	ENSMUSG00000020720	Psmd12	1500002F15Rik|AI480719|P55	proteasome (prosome, macropain) 26S subunit, non-ATPase, 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-69900925-2	chr8	69900697	69900897	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023312, intron 2 of 4)	intron (NM_023312, intron 2 of 4)	-1387.0	NM_032004	83984.0	Mm.432504	NM_032004	ENSMUSG00000047654	Tssk6	Sstk|TSK-6|TSSK-6	testis-specific serine kinase 6	protein-coding	0.265709860473212	1.17184259961741	0.282845586932599	0.276443108529453	0.689629255177277	0.508660959160102	0.284667568156297	0.970234587134666	0.302940089359444	0.872555246956253	1
Merged-chr7-123396988-2	chr7	123396888	123397088	+	951.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025304, intron 1 of 10)	intron (NM_025304, intron 1 of 10)	-10829.0	NM_001355050	30949.0	Mm.260527	NM_025304	ENSMUSG00000030763	Lcmt1	AL033290|LCMT-1|Lcmt	leucine carboxyl methyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-29034391-2	chr17	29034291	29034491	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_036613, intron 1 of 6)	ID4|SINE|ID	1731.0	NR_036613	20383.0	Mm.6787	NM_013663	ENSMUSG00000071172	Srsf3	AL024116|Sfrs3|X16	serine/arginine-rich splicing factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-43182155-2	chr5	43182055	43182255	+	631.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_028417, intron 5 of 7)	intron (NR_028417, intron 5 of 7)	-51308.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	0.2776609476727	0.777009222950134	0.734314490004873	0.582019179552276	0.278854779028427	0.298227479344684	0.467684093128536	0.812897170619773	-0.774485233020265	0.671535665482532	1
Merged-chr19-31765076-2	chr19	31764976	31765176	+	547.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001013833)	promoter-TSS (NM_001013833)	-43.0	NM_001013833	19091.0	Mm.381170	NM_011160	ENSMUSG00000052920	Prkg1	AW125416|CGKI|Gm19690|Prkg1b|Prkgr1b	protein kinase, cGMP-dependent, type I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-27933679-4	chr7	27933598	27933798	+	956.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4268.0	NM_028538	73430.0	Mm.379224	NM_028538	ENSMUSG00000070709	Zfp974	1700049G17Rik|AV321011|BB026409	zinc finger protein 974	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-128705353-4	chr1	128705260	128705460	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-113061.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	5.77684747427194	6.27296689499477	6.68766654621182	5.91063435229788	5.79727161754822	5.6307487606046	6.3391289670983	5.4388669817135	-0.396121445537798	0.155104847839784	0.610280268161914
Merged-chr14-54939553-3	chr14	54939455	54939655	+	855.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_026066)	TTS (NM_026066)	3058.0	NM_029390	67272.0	Mm.41614	NM_026066	ENSMUSG00000040759	Cmtm5	1500005P16Rik|2900052H21Rik|Cklfsf5	CKLF-like MARVEL transmembrane domain containing 5	protein-coding	2.95160990351718	3.11755648297754	3.28857744662765	3.19673042217653	2.69095041050912	3.65651535600541	1.63976203947423	3.56250252272486	-0.0492263008134383	0.945346705461117	0.998431161219273
Merged-chr12-16532589-3	chr12	16532488	16532688	+	747.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57182.0	NM_015763	14245.0	Mm.153625	NM_015763	ENSMUSG00000020593	Lpin1	Lipin1|fld	lipin 1	protein-coding	1.53592970616769	1.26304935942348	1.53736149196841	1.04234858920314	2.06318639538369	1.60023690388589	1.24036074310333	1.82524648705181	1.37767054902095	0.246596762431157	0.74563204527445
Merged-chr7-5102221-1	chr7	5102121	5102321	+	608.0	f1_c57bl6.idr	Intergenic	Intergenic	14690.0	NM_001145013	192658.0	Mm.28764	NM_138954	ENSMUSG00000035191	Rfpl4	D7Ertd486e|Rfpl4a	ret finger protein-like 4	protein-coding	0.641296983217047	1.50357419647629	1.19722189823555	1.5762173222977	0.820469228124554	0.683453340905088	0.670786375272385	1.39764134346525	-1.4414782367045	0.344859824972797	0.845794803766071
Merged-chr6-88824846-1	chr6	88824746	88824946	+	542.0	f1_c57bl6.idr	intron (NM_001166249, intron 7 of 7)	intron (NM_001166249, intron 7 of 7)	17089.0	NM_001362152	80283.0	Mm.166858	NM_030251	ENSMUSG00000030083	Abtb1	AI847549|BC003234|BPOZ|EF1ABP	ankyrin repeat and BTB (POZ) domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-4634934-2	chr18	4634850	4635050	+	878.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_001081963)	promoter-TSS (NM_001081963)	21.0	NM_001081963	240185.0	Mm.33179	NM_001081963	ENSMUSG00000033960	Jcad	1110056P05Rik|9430020K01Rik|Gm328|mKIAA1462	junctional cadherin 5 associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140648057-5	chr5	140647916	140648116	+	877.2999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001308040, intron 1 of 12)	intron (NM_001308040, intron 1 of 12)	1015.0	NM_001308040	78339.0	Mm.28947	NM_175274	ENSMUSG00000036565	Ttyh3	2900029G13Rik|AI414930|TTY3|mTTY3	tweety family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-58406072-4	chr10	58405967	58406167	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359116, intron 2 of 9)	ORR1E|LTR|ERVL-MaLR	11694.0	NM_001346676	110829.0	Mm.57734	NM_026148	ENSMUSG00000019920	Lims1	2310016J22Rik|4921524A02Rik|AI507642|AU021743|AW551584|C430041B13Rik|Lims1l|PINCH|PINCH1	LIM and senescent cell antigen-like domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-3183374-2	chr11	3183258	3183458	+	994.833374	f0_balb.idr|f1_balb.idr	intron (NM_030207, intron 4 of 32)	B3|SINE|B2	10105.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-47899967-1	chr9	47899867	47900067	+	752.0	f0_balb.idr	Intergenic	MER5A|DNA|hAT-Charlie	-81759.0	NR_046048	100038460.0	Mm.447649	NR_046048		Gm10677	-	predicted gene 10677	ncRNA	-0.650761878319711	-0.635482840913924	-0.640435313937718	-0.644291276427143	-0.475273665710137	-0.634373419370071	0.422210965449921	-0.643615416377743	3.70639204521555	0.161823282136615	1
Merged-chr7-109083324-3	chr7	109083225	109083425	+	809.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001038624)	promoter-TSS (NM_001038624)	-1.0	NM_178780	320360.0	Mm.71007	NM_178780	ENSMUSG00000048330	Ric3	E130307J04Rik	RIC3 acetylcholine receptor chaperone	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123453557-1	chr5	123453457	123453657	+	546.0	f1_c57bl6.idr	3' UTR (NM_133917, exon 17 of 17)	3' UTR (NM_133917, exon 17 of 17)	28544.0	NM_029594	76399.0	Mm.75049	NM_029594	ENSMUSG00000029437	Il31	1700013B14Rik	interleukin 31	protein-coding	-0.177122929870589	-0.160739229060051	-0.166089629574741	0.384507333792721	-0.0222496265870312	-0.15953536256658	0.637047554323518	-0.169504992493553	0.929235919741855	0.690958927948958	1
Merged-chr7-13039689-2	chr7	13039589	13039789	+	772.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1414.0	NM_001168469	22192.0	Mm.196580	NM_145578	ENSMUSG00000005575	Ube2m	2510040H03Rik|UBC12|Ubc-rs2	ubiquitin-conjugating enzyme E2M	protein-coding	-1.31349849087795	-1.28274354783242	-1.29349452597086	-1.3023256995151	-1.3130151546297	-1.28041376602105	-0.694015972326031	-1.30074492367298	2.57396649482007	0.456321314346772	1
Merged-chr10-80822201-3	chr10	80822109	80822309	+	887.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-4447.0	NM_001301034	18245.0	Mm.398119	NM_008753	ENSMUSG00000035242	Oaz1	AZ-1|AZ1|Antizyme|ODC-Az|Oaz	ornithine decarboxylase antizyme 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-73745169-2	chr15	73745069	73745269	+	614.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166388, intron 1 of 5)	intron (NM_001166388, intron 1 of 5)	-2857.0	NM_008975	19245.0	Mm.390807	NM_008975	ENSMUSG00000059895	Ptp4a3	AV088979|Prl-3|pPtp4a3	protein tyrosine phosphatase 4a3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-124693614-4	chr4	124693488	124693688	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026031)	promoter-TSS (NM_026031)	-34.0	NM_026031	67205.0	Mm.259121	NM_026031	ENSMUSG00000028907	Utp11	2700082D03Rik|CGI-94|Cgi94|Utp11l	UTP11 small subunit processome component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-62457398-4	chr11	62457314	62457514	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177229)	promoter-TSS (NM_177229)	-82.0	NM_177229	20185.0	Mm.271814	NM_011308	ENSMUSG00000018501	Ncor1	5730405M06Rik|A230020K14Rik|N-CoR|RIP13|Rxrip13|mKIAA1047	nuclear receptor co-repressor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-107864144-4	chr3	107864061	107864261	+	894.8250119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13069.0	NM_133867	99662.0	Mm.108491	NM_133867	ENSMUSG00000040600	Eps8l3	AI504489|Eps8r3	EPS8-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-12473740-4	chr16	12473647	12473847	+	888.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-337643.0	NR_040507	75493.0	Mm.396146	NR_040507	ENSMUSG00000101565	1700003L19Rik	-	RIKEN cDNA 1700003L19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-137784662-2	chr5	137784562	137784762	+	671.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_144913, exon 1 of 4)	exon (NM_144913, exon 1 of 4)	2039.0	NM_144913	231803.0	Mm.61193	NM_144913	ENSMUSG00000029726	Mepce	Bcdin3|D5Wsu46e	methylphosphate capping enzyme	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67536837-4	chr10	67536715	67536915	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1054.0	NM_010118	13654.0	Mm.290421	NM_010118	ENSMUSG00000037868	Egr2	Egr-2|Krox-20|Krox20|NGF1-B|Zfp-25|Zfp-6	early growth response 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-101686553-2	chr13	101686453	101686653	+	713.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001024955, intron 8 of 9)	intron (NM_001024955, intron 8 of 9)	6077.0	NM_001024955	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-87754828-2	chr10	87754728	87754928	+	584.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	-103437.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	0.460449379204941	-0.228995517082527	-0.233444868270445	-0.236872842632375	0.23158848227192	-0.227991579908916	-0.232464142951701	-0.0724074002986889	-0.385770632930329	0.873667256721394	1
Merged-chr11-29654015-4	chr11	29653907	29654107	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16_Mm|LTR|ERVK	-38891.0	NM_194053	68585.0	Mm.192580	NM_024226	ENSMUSG00000020458	Rtn4	1110020G17Rik|AA407876|AA409940|AA960376|ASY|C130026I10Rik|NOGO|NSP-CL|NgA|Nogo-A|Nogo-B|Nogo-C|mKIAA0886|mKIAA4153	reticulon 4	protein-coding	4.15476400703269	4.24787537182948	3.85217885537125	3.94429662829223	3.77891871196877	4.27701759650754	2.96511201568413	4.28686820268968	-0.184617800207138	0.701685264932991	0.998431161219273
Merged-chr1-95668542-4	chr1	95668413	95668613	+	885.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009183)	promoter-TSS (NM_009183)	-919.0	NM_001159745	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-16293255-2	chr19	16293155	16293355	+	634.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008139, intron 2 of 6)	intron (NM_008139, intron 2 of 6)	21749.0	NR_105832	102465218.0		NR_105832	ENSMUSG00000098718	Mir496b	Gm28028|mmu-mir-496b	microRNA 496b	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-101845190-2	chr5	101845090	101845290	+	731.666626	f1_balb.idr|f1_c57bl6.idr	exon (NM_172882, exon 64 of 67)	exon (NM_172882, exon 64 of 67)	80060.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100520886-4	chr7	100520792	100520992	+	934.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6077.0	NM_153527	69387.0	Mm.278554	NM_153527	ENSMUSG00000030708	Dnajb13	1700014P03Rik|Tsarg	DnaJ heat shock protein family (Hsp40) member B13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-47513844-4	chr14	47513688	47513888	+	922.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027414, intron 4 of 5)	intron (NR_027414, intron 4 of 5)	41227.0	NM_001146085	78938.0	Mm.11935	NM_030236	ENSMUSG00000037536	Fbxo34	2900057B08Rik|5830426G16Rik	F-box protein 34	protein-coding	1.13942682117348	2.51955039773737	1.20311337385154	2.35896170274268	2.25222177999927	2.43851275078098	1.84505135937813	1.93261389979774	0.395098576195943	0.713477249119067	0.998431161219273
Merged-chr15-25525548-3	chr15	25525447	25525647	+	693.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-97003.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-64357662-4	chr7	64357560	64357760	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177893, intron 8 of 13)	MLTR14|LTR|ERV1	16435.0	NM_177893	330554.0	Mm.236510	NM_177893	ENSMUSG00000033458	Fan1	6030441H18Rik|Mtmr15|mFAN1	FANCD2/FANCI-associated nuclease 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-102968500-4	chr2	102968402	102968602	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66837.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	0.886852204019016	1.19089155059666	1.94258526993619	1.26049325158558	0.893690030184707	0.749526451084929	1.87790259337483	0.719170772752536	-0.712396663360533	0.609844665661088	0.974992433107985
Merged-chr15-10159194-2	chr15	10159094	10159294	+	593.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-18044.0	NM_011169	19116.0	Mm.10516	NM_011169	ENSMUSG00000005268	Prlr	AI987712|Pr-1|Pr-3|Prlr-rs1	prolactin receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-31465192-2	chr6	31465092	31465292	+	652.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013791, intron 9 of 17)	intron (NM_013791, intron 9 of 17)	66364.0	NM_013791	27418.0	Mm.238038	NM_013791	ENSMUSG00000025609	Mkln1	A130067F06Rik|AU015903|BB154892	muskelin 1, intracellular mediator containing kelch motifs	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-76035204-1	chr18	76035104	76035304	+	822.0	f1_balb.idr	intron (NM_145356, intron 3 of 4)	intron (NM_145356, intron 3 of 4)	-24122.0	NM_001357506	207259.0	Mm.159332	NM_145356	ENSMUSG00000044646	Zbtb7c	B230208J24Rik|Kr-pok|Zbtb36	zinc finger and BTB domain containing 7C	protein-coding	1.24401162265646	0.438406359397958	0.427461052172625	0.418888966674761	1.25941563069781	0.44084901487393	0.429890776410784	1.43813752503216	1.24120295998569	0.505188322615757	0.940939014262092
Merged-chr7-43797456-3	chr7	43797221	43797421	+	646.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008940)	promoter-TSS (NM_008940)	-256.0	NM_001324398	259277.0	Mm.458023	NM_008940	ENSMUSG00000064023	Klk8	BSP1|NP|Nrpn|Prss19	kallikrein related-peptidase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98360230-2	chr11	98360130	98360330	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021547, intron 1 of 14)	B1_Mus1|SINE|Alu	1862.0	NM_021547	59045.0	Mm.265546	NM_021547	ENSMUSG00000018167	Stard3	Mln64|es64	START domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-23143673-2	chr19	23143573	23143773	+	867.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010638, intron 1 of 1)	intron (NM_010638, intron 1 of 1)	2447.0	NM_010638	16601.0	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|Gm9971	Kruppel-like factor 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117480695-4	chr8	117480558	117480758	+	941.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17617.0	NM_172285	234779.0	Mm.192699	NM_172285	ENSMUSG00000034330	Plcg2	PLC-gamma-2|PLCgamma2|Plcg-2	phospholipase C, gamma 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21238869-4	chr9	21238880	21239080	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_016679, exon 1 of 5)	5' UTR (NM_016679, exon 1 of 5)	352.0	NM_016679	50868.0	Mm.248266	NM_016679	ENSMUSG00000003308	Keap1	INRF2|mKIAA0132	kelch-like ECH-associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-103008114-2	chr11	103008019	103008219	+	668.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026551, intron 1 of 4)	intron (NM_026551, intron 1 of 4)	-8198.0	NR_105896	102466988.0		NR_105896	ENSMUSG00000098613	Mir6931	Gm27303|mmu-mir-6931	microRNA 6931	ncRNA	-1.28740438135795	-1.25941260645459	-1.26960050687822	-1.27796915162235	-1.13971404235137	-1.25720484593295	-1.26729418953473	-0.850738118027682	2.36966603248562	0.479891334380701	1
Merged-chr14-20070786-2	chr14	20070686	20070886	+	625.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12386.0	NM_026209	67509.0	Mm.292423	NM_026209	ENSMUSG00000045107	Saysd1	1810063B07Rik|4930488P03Rik	SAYSVFN motif domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-86516191-4	chr1	86516099	86516299	+	948.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10358.0	NR_153834	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119481688-1	chr11	119481588	119481788	+	738.0	f1_balb.idr	intron (NR_153849, intron 2 of 3)	intron (NR_153849, intron 2 of 3)	9547.0	NR_153849	78439.0	Mm.440446	NR_153849	ENSMUSG00000109408	A930037H05Rik	Gm44935	RIKEN cDNA A930037H05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3698205-4	chr12	3698110	3698310	+	979.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162465, intron 9 of 17)	B4|SINE|B4	-108770.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-106016473-4	chr12	106016366	106016566	+	947.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029843, intron 1 of 13)	L1MD|LINE|L1	6203.0	NM_001029843	22367.0	Mm.2981	NM_011705	ENSMUSG00000021115	Vrk1	51PK	vaccinia related kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116098657-2	chr11	116098557	116098757	+	608.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11578.0	NM_001205081	217333.0	Mm.347770	NM_172570	ENSMUSG00000020773	Trim47	2210023F24Rik	tripartite motif-containing 47	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127244484-4	chr7	127244386	127244586	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177362)	promoter-TSS (NM_177362)	-40.0	NM_177362	244216.0	Mm.41038	NM_177362	ENSMUSG00000054716	Zfp771	G630024C07Rik|Znf771	zinc finger protein 771	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-34538825-2	chr5	34538725	34538925	+	801.174988	f1_balb.idr|f1_c57bl6.idr	intron (NM_011893, intron 1 of 12)	intron (NM_011893, intron 1 of 12)	-4540.0	NM_001145858	24055.0	Mm.5012	NM_011893	ENSMUSG00000054520	Sh3bp2	3BP2	SH3-domain binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-136246596-4	chr5	136246481	136246681	+	989.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1641.0	NM_018825	23921.0	Mm.425294	NM_018825	ENSMUSG00000005057	Sh2b2	Aps	SH2B adaptor protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-51644524-2	chr1	51644422	51644622	+	865.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47804.0	NR_151621	100045066.0	Mm.404734	NR_151621		Gm17767	-	predicted gene, 17767	ncRNA	1.54079274028036	2.15213670472324	2.51699114117346	1.03366456363091	1.22065086208403	1.08490495982683	2.09029100300218	2.12194209058485	-0.566350855485435	0.630860353140044	0.981465575333797
Merged-chr6-5324856-2	chr6	5324745	5324945	+	622.5	f0_c57.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	-26472.0	NM_183308	330260.0	Mm.126984	NM_183308	ENSMUSG00000032667	Pon2	6330405I24Rik|AI481612	paraoxonase 2	protein-coding	1.92949380209244	2.0868582302675	3.45754033762008	2.71762805959735	0.815501176430846	0.942599817534806	0.904123934734411	0.869241619470263	-6.0488647227309	4.03289426103716e-06	0.000213470582399664
Merged-chr8-81399336-1	chr8	81399236	81399436	+	888.0	f0_balb.idr	intron (NM_001024617, intron 1 of 24)	intron (NM_001024617, intron 1 of 24)	56774.0	NM_001297593	234515.0	Mm.324468	NM_001024617	ENSMUSG00000037940	Inpp4b	E130107I17Rik	inositol polyphosphate-4-phosphatase, type II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-35138233-1	chr4	35138133	35138333	+	797.0	f0_balb.idr	intron (NM_178061, intron 1 of 3)	intron (NM_178061, intron 1 of 3)	-13822.0	NM_199157	387510.0	Mm.386929	NM_199157	ENSMUSG00000042993	Ifnk	-	interferon kappa	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-9149630-4	chr13	9149546	9149746	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172585, intron 8 of 17)	intron (NM_172585, intron 8 of 17)	55765.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-41523415-4	chr10	41523298	41523498	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016898, intron 3 of 5)	intron (NM_016898, intron 3 of 5)	3898.0	NM_016898	53599.0	Mm.269815	NM_016898	ENSMUSG00000019818	Cd164	A115|A24|AA589639|AW540279|MGC-24|MSSP	CD164 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-144692597-2	chr2	144692497	144692697	+	604.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025314, intron 4 of 5)	RMER1B|Other|Other	92644.0	NM_025314	66044.0	Mm.28109	NM_025314	ENSMUSG00000027430	Dtd1	0610006H08Rik|DTD|DUE-B|Hars2	D-tyrosyl-tRNA deacylase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-33799458-4	chr17	33799368	33799568	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-11055.0	NM_001357162	80880.0	Mm.196330	NM_030697	ENSMUSG00000042099	Kank3	0610013D04Rik|Ankrd47|D17Ertd288e|NG28	KN motif and ankyrin repeat domains 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-34104133-2	chr2	34104033	34104233	+	944.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_130173, intron 1 of 3)	intron (NR_130173, intron 1 of 3)	3602.0	NR_130173	329387.0	Mm.125817	NR_130173	ENSMUSG00000087461	C230014O12Rik	-	RIKEN cDNA C230014O12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-122377984-4	chr2	122377866	122378066	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9048.0	NM_001013829	435684.0	Mm.458215	NM_001013829	ENSMUSG00000033256	Shf	-	Src homology 2 domain containing F	protein-coding	4.60677431991811	5.13551703298067	3.30805454647668	4.54844486337545	4.568092891258	4.36090792037728	4.28295000631463	5.2217726046205	0.155321001785867	0.727360709384134	0.998431161219273
Merged-chr19-7383029-4	chr19	7382907	7383107	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001167831)	promoter-TSS (NM_001167831)	4.0	NR_045703	654802.0	Mm.414924	NR_045703		1700105P06Rik	-	RIKEN cDNA 1700105P06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-79384814-3	chr8	79384726	79384926	+	821.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008539, intron 1 of 6)	intron (NM_008539, intron 1 of 6)	14642.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-68181380-2	chr8	68181280	68181480	+	730.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-95148.0	NM_028182	72281.0	Mm.40974	NM_028182	ENSMUSG00000053886	Sh2d4a	2210402M20Rik|SH2A	SH2 domain containing 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-44715647-1	chr3	44715547	44715747	+	557.0	f0_balb.idr	Intergenic	Intergenic	662613.0	NR_045172	72511.0	Mm.140700	NR_045172	ENSMUSG00000097040	2610316D01Rik	-	RIKEN cDNA 2610316D01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-84034259-4	chr12	84034152	84034352	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	T-rich|Low_complexity|Low_complexity	-4127.0	NM_134247	171282.0	Mm.482217	NM_134247	ENSMUSG00000052392	Acot4	B430212I04Rik|PTE-Ib|Pte1b|Pte2b	acyl-CoA thioesterase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-109136981-3	chr4	109136882	109137082	+	854.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001355191, exon 1 of 21)	5' UTR (NM_001355191, exon 1 of 21)	931.0	NM_001355191	100273.0	Mm.366315	NM_133885	ENSMUSG00000028559	Osbpl9	2600011I06Rik|AU015843|Orp-9	oxysterol binding protein-like 9	protein-coding	3.72248141760803	3.52201668684928	4.13895814647558	4.13613198207048	3.9190392363877	3.44142444574736	3.52531510749667	4.29922993634506	-0.0815484159644154	0.866565379678067	0.998431161219273
Merged-chr1-171849678-4	chr1	171849567	171849767	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289470, intron 2 of 8)	intron (NM_001289470, intron 2 of 8)	9970.0	NM_013489	12523.0	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	5.0355792136768	5.03363331929082	4.99443566791339	3.94377963851767	4.41582349922862	3.47436584584841	4.71082431284426	4.745301361702	-0.488144748154078	0.247245268815062	0.746589446789374
Merged-chr17-35429721-2	chr17	35429646	35429846	+	671.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	4869.0	NM_207648	110557.0	Mm.439827	NM_207648	ENSMUSG00000073409	H2-Q6	0610037M15Rik|H-2Q6|Qa-6|Qa6	histocompatibility 2, Q region locus 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-30870198-4	chr16	30870101	30870301	+	993.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR50|LTR|ERVL	211231.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-66559869-2	chr15	66559809	66560009	+	553.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172514, intron 1 of 9)	intron (NM_172514, intron 1 of 9)	1137.0	NM_172514	213068.0	Mm.132299	NM_172514	ENSMUSG00000036944	Tmem71	AI661017|E430024D12	transmembrane protein 71	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-47287883-1	chr13	47287783	47287983	+	683.0	f0_balb.idr	Intergenic	Intergenic	93880.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	2.41895530660237	1.67603192274515	1.94050041247934	2.22395971124773	1.91897360115274	1.20439283134723	2.65403566861012	1.15267228321536	-0.468059276430273	0.668696118508527	0.993344020005271
Merged-chr2-167963282-2	chr2	167963182	167963382	+	690.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011201, intron 1 of 8)	intron (NM_011201, intron 1 of 8)	30955.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-76407280-2	chr11	76407180	76407380	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_023355, exon 1 of 3)	exon (NM_023355, exon 1 of 3)	137.0	NM_019818	56322.0	Mm.18803	NM_019818	ENSMUSG00000020843	Timm22	Tim22	translocase of inner mitochondrial membrane 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-85735918-4	chr1	85735810	85736010	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177055, intron 1 of 5)	intron (NM_177055, intron 1 of 5)	696.0	NM_177055	319997.0	Mm.116691	NM_177055	ENSMUSG00000052760	A630001G21Rik	-	RIKEN cDNA A630001G21 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-112746917-3	chr12	112746823	112747023	+	869.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001024602)	TTS (NM_001024602)	13601.0	NR_105905	102466989.0		NR_105905	ENSMUSG00000099165	Mir6940	Gm27655|mmu-mir-6940	microRNA 6940	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-31125166-2	chr17	31125031	31125231	+	898.625	f1_balb.idr|f1_c57bl6.idr	TTS (NM_011575)	TTS (NM_011575)	4480.0	NM_011575	21786.0	Mm.4641	NM_011575	ENSMUSG00000024029	Tff3	ITF|mITF	trefoil factor 3, intestinal	protein-coding	1.64009941887523	1.72947904857755	1.01147502061186	1.73116121518181	1.43698283962411	1.44653797066388	1.22702435453355	1.93076462607762	-0.0738378812516544	0.94974971655392	0.998431161219273
Merged-chr1-86532554-4	chr1	86532447	86532647	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5990.0	NM_001360830	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-32280709-4	chr17	32280602	32280802	+	868.775024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286630, intron 1 of 19)	intron (NM_001286630, intron 1 of 19)	3421.0	NM_198094	57261.0	Mm.253518	NM_020508	ENSMUSG00000024002	Brd4	Brd5|HUNK1|MCAP|WI-11513	bromodomain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-48285807-1	chr17	48285707	48285907	+	758.333313	f0_c57.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-14231.0	NM_001033405	328833.0	Mm.329104	NM_001033405	ENSMUSG00000071068	Treml2	AW049306|Gm750|Tlt2	triggering receptor expressed on myeloid cells-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-119814941-4	chr3	119814845	119815045	+	823.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31557.0	NM_019550	56195.0	Mm.29966	NM_019550	ENSMUSG00000028134	Ptbp2	Ptb2|brPTB|nPTB	polypyrimidine tract binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-92971236-2	chr1	92971136	92971336	+	568.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-1883.0	NM_001104529	64095.0	Mm.152780	NM_022320	ENSMUSG00000026271	Gpr35	KPG_007	G protein-coupled receptor 35	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-98880909-4	chr10	98880815	98881015	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-33727.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-6638372-2	chr15	6638272	6638472	+	746.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011815, intron 6 of 17)	intron (NM_011815, intron 6 of 17)	15931.0	NR_155272	102632231.0	Mm.444780	NR_155272		LOC102632231	-	uncharacterized LOC102632231	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53151169-3	chr4	53151080	53151280	+	954.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 1 of 49)	intron (NM_013454, intron 1 of 49)	8715.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-12014432-2	chr19	12014332	12014532	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx10|LINE|L1	22308.0	NM_146680	258675.0	Mm.271517	NM_146680	ENSMUSG00000067529	Olfr1423	MOR239-3	olfactory receptor 1423	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-10870099-2	chr15	10869999	10870199	+	829.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41048.0	NR_040357	100502601.0	Mm.399434	NR_040357		Gm19276	-	predicted gene, 19276	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-20401017-4	chr11	20400901	20401101	+	777.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68288.0	NM_018861	55963.0	Mm.6379	NM_018861	ENSMUSG00000020142	Slc1a4	ASCT-1|ASCT1|AW045657|SATT	solute carrier family 1 (glutamate/neutral amino acid transporter), member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-61365024-2	chr9	61364924	61365124	+	599.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7342.0	NM_001083928	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-121458656-3	chr9	121458551	121458751	+	557.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357968, intron 12 of 14)	intron (NM_001357968, intron 12 of 14)	37043.0	NM_001284508	12424.0	Mm.2619	NM_031161	ENSMUSG00000032532	Cck	-	cholecystokinin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-43939405-2	chr19	43939305	43939505	+	663.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028029, intron 1 of 15)	intron (NM_028029, intron 1 of 15)	793.0	NM_028029	71972.0	Mm.159024	NM_028029	ENSMUSG00000025195	Dnmbp	2410003L07Rik|2410003M15Rik|TUBA	dynamin binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-76268679-2	chr6	76268579	76268779	+	543.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-973798.0	NR_155299	74342.0	Mm.292568	NM_028880	ENSMUSG00000060780	Lrrtm1	4632401D06Rik|AW125451	leucine rich repeat transmembrane neuronal 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-58401610-4	chr13	58401540	58401740	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_031761)	promoter-TSS (NR_031761)	477.0	NM_001360494	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-134452505-4	chr5	134452356	134452556	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081462, intron 1 of 29)	intron (NM_001081462, intron 1 of 29)	3806.0	NM_001081465	57080.0	Mm.332735	NM_020331	ENSMUSG00000023079	Gtf2ird1	1700012P16Rik|BEN|Cream1|ESTM9|GTF3|Gtf2il|MusTRD1|Tg(Alb1-Myc)166.8Sst|WBSCR11|X83320	general transcription factor II I repeat domain-containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-143327920-2	chr5	143327820	143328020	+	664.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_153112, intron 2 of 7)	B4A|SINE|B4	1318.0	NM_001359445	72881.0	Mm.261606	NM_028379	ENSMUSG00000001844	Zdhhc4	1810021D01Rik|2900029I10Rik|DHHC-4	zinc finger, DHHC domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-10184429-2	chr9	10184329	10184529	+	797.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001170787, intron 3 of 24)	(CA)n|Simple_repeat|Simple_repeat	289998.0	NR_105745	102466147.0		NR_105745	ENSMUSG00000098408	Mir6237	Gm27411|mmu-mir-6237	microRNA 6237	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-8204944-2	chr2	8204844	8205044	+	562.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17B|LTR|ERVK	-808746.0	NM_001110231	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101238036-2	chr15	101237936	101238136	+	657.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12850.0	NR_045328	380977.0	Mm.399924	NR_045326	ENSMUSG00000097915	A330009N23Rik	-	RIKEN cDNA A330009N23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-38378768-2	chr16	38378668	38378868	+	552.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001081984)	TTS (NM_001081984)	16578.0	NM_022318	64082.0	Mm.390856	NM_022318	ENSMUSG00000022803	Popdc2	AV006127|Pop2	popeye domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88511570-2	chr3	88511459	88511659	+	871.875	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8207.0	NM_001002011	16905.0	Mm.243014	NM_019390	ENSMUSG00000028063	Lmna	Dhe	lamin A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-69722237-2	chr2	69722137	69722337	+	926.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081086)	promoter-TSS (NM_001081086)	-851.0	NM_001081086	228005.0	Mm.11815	NM_001081086	ENSMUSG00000042133	Ppig	AU019516|AU022200|B230312B02Rik|CYP|SRCyp	peptidyl-prolyl isomerase G (cyclophilin G)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-17913653-1	chr16	17913553	17913753	+	601.0	f1_c57bl6.idr	TTS (NM_029469)	TTS (NM_029469)	1406.0	NM_029469	195333.0	Mm.463003	NM_029469	ENSMUSG00000022738	Gsc2	4930568H22Rik|GSC-2|Gscl	goosecoid homebox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-26484716-2	chr2	26484616	26484816	+	645.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008714, intron 3 of 33)	intron (NM_008714, intron 3 of 33)	-14597.0	NR_105962	102465602.0		NR_105962	ENSMUSG00000098548	Mir6996	Gm27531|mmu-mir-6996	microRNA 6996	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-54784466-2	chr6	54784366	54784566	+	644.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-32450.0	NM_199143	387524.0	Mm.286149	NM_199143	ENSMUSG00000058446	Znrf2	1190002C14Rik|AU044205|D6Ertd365e	zinc and ring finger 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-143423578-2	chr6	143423478	143423678	+	566.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	111930.0	NR_155418	75904.0	Mm.414916	NR_155418	ENSMUSG00000084971	4930579D09Rik	-	RIKEN cDNA 4930579D09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69696622-2	chr11	69696522	69696722	+	624.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001034097)	promoter-TSS (NM_001034097)	-524.0	NM_001159503	619441.0	Mm.8983	NM_001034097	ENSMUSG00000018752	Tnfsfm13	Tnfsf12-Tnfsf13|Tnfsf12Tnfsf13|Tnfsf12tnfsf13|Twe-pril	tumor necrosis factor (ligand) superfamily, membrane-bound member 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-62245015-2	chr14	62244915	62245115	+	884.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47964.0	NM_173419	239133.0	Mm.127330	NM_173419	ENSMUSG00000048281	Dleu7	BC038059	deleted in lymphocytic leukemia, 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100873597-2	chr7	100873497	100873697	+	731.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081116, intron 20 of 20)	intron (NM_001081116, intron 20 of 20)	8812.0	NR_037289	100526508.0		NR_037289	ENSMUSG00000093296	Mir3102	mmu-mir-3102	microRNA 3102	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-59163527-4	chr11	59163524	59163724	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001270791, exon 1 of 2)	exon (NM_001270791, exon 1 of 2)	121.0	NM_001270791	216792.0	Mm.266175	NM_173785	ENSMUSG00000049287	Iba57	4930543L23Rik|A230051G13Rik|C1orf69	IBA57 homolog, iron-sulfur cluster assembly	protein-coding	5.45119110382955	3.12411831109903	4.60752858675633	4.4388134133579	5.46849381912204	3.15133710215261	4.68717187824722	4.41120595825582	0.0294276648459296	0.956709589584657	0.998431161219273
Merged-chr10-18931630-3	chr10	18931495	18931695	+	874.400024	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	80368.0	NM_001166402	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	2.36821955939923	2.58056293164629	2.74325789517979	2.5035504144475	1.14212648443013	1.52953106166472	2.17557327899694	1.18625090026773	-2.53205426614642	0.0134243233914494	0.134377157553317
Merged-chr15-79327484-4	chr15	79327394	79327594	+	964.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016915, intron 1 of 15)	intron (NM_016915, intron 1 of 15)	877.0	NM_016915	53357.0	Mm.155620	NM_016915	ENSMUSG00000042632	Pla2g6	BB112799|PNPLA9|iPLA(2)beta|iPLA2|iPLA2beta	phospholipase A2, group VI	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111814018-4	chr12	111813902	111814102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028875)	promoter-TSS (NM_028875)	-123.0	NM_028875	74335.0	Mm.19082	NM_028875	ENSMUSG00000021287	Xrcc3	-	X-ray repair complementing defective repair in Chinese hamster cells 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-6273955-3	chr11	6273863	6274063	+	608.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134020, intron 3 of 4)	intron (NM_134020, intron 3 of 4)	874.0	NM_134020	103694.0	Mm.254495	NM_134020	ENSMUSG00000004394	Tmed4	1110014L17Rik|AI326346	transmembrane p24 trafficking protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-50463595-2	chr9	50463495	50463695	+	678.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30930.0	NM_029639	76509.0	Mm.29959	NM_029639	ENSMUSG00000032068	Plet1	0610037B23Rik|1600029D21Rik|AA407923|AU043048	placenta expressed transcript 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-70352097-1	chr16	70351997	70352197	+	571.0	f1_balb.idr	intron (NM_028803, intron 1 of 15)	intron (NM_028803, intron 1 of 15)	38148.0	NM_028803	74185.0	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	0.637694607145557	0.910618928672048	0.350339393735354	0.343075084495012	0.879797897092217	1.37522613749257	0.352403289980356	0.344349240093844	1.2076407552099	0.504508128509004	1
Merged-chr2-150829960-5	chr2	150829817	150830017	+	778.299988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153781, intron 19 of 19)	intron (NM_153781, intron 19 of 19)	12653.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-85526261-2	chr8	85526161	85526361	+	973.666626	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_173866, exon 12 of 12)	3' UTR (NM_173866, exon 12 of 12)	29010.0	NM_019794	56445.0	Mm.475573	NM_019794	ENSMUSG00000031701	Dnaja2	1500017M13Rik|2010206B19Rik|DNAJ|DNJ3|Dnaj3|HIRIP4|PRO3015|mDj3	DnaJ heat shock protein family (Hsp40) member A2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-117403800-3	chr12	117403715	117403915	+	690.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66803.0	NR_044987	432713.0	Mm.459210	NR_044987	ENSMUSG00000101930	Gm5441	-	predicted gene 5441	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-69184645-4	chr12	69184525	69184725	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025589)	promoter-TSS (NM_025589)	467.0	NM_146035	217664.0	Mm.206642	NM_146035	ENSMUSG00000043998	Mgat2	AA407964|CDGS2|GLCNACTII|GNT-II|GNT2	mannoside acetylglucosaminyltransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55781428-4	chr14	55781262	55781462	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080435, intron 4 of 25)	intron (NM_080435, intron 4 of 25)	2710.0	NM_080435	104110.0	Mm.287010	NM_080435	ENSMUSG00000022220	Adcy4	mKIAA4004	adenylate cyclase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91365920-4	chr16	91365792	91365992	+	697.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6891.0	NM_010509	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-165775781-2	chr1	165775681	165775881	+	605.25	f1_balb.idr|f1_c57bl6.idr	TTS (NM_011804)	TTS (NM_011804)	12023.0	NM_011804	433375.0	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-84967098-2	chr15	84966998	84967198	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033273, intron 1 of 9)	RMER2|LTR|ERV1	-15475.0	NR_037206	100526461.0		NR_037206	ENSMUSG00000080441	Mir1249	mir-1249|mmu-mir-1249	microRNA 1249	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-9876026-4	chr10	9875958	9876158	+	971.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081344, intron 2 of 25)	MTC|LTR|ERVL-MaLR	24982.0	NM_001081344	78808.0	Mm.331751	NM_030191	ENSMUSG00000019790	Stxbp5	0710001E20Rik|4930565N16Rik|AW742610|LGL3|mKIAA1006	syntaxin binding protein 5 (tomosyn)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70613111-1	chr8	70613011	70613211	+	697.0	f1_c57bl6.idr	Intergenic	B1_Mur3|SINE|Alu	-3733.0	NM_153074	211228.0	Mm.132939	NM_153074	ENSMUSG00000049988	Lrrc25	Mapa	leucine rich repeat containing 25	protein-coding	0.167249888381504	0.549549881739431	0.180741194540911	0.487583837096867	0.561572422830988	0.18875552723542	0.182185786594712	0.998688271694905	1.14833361626659	0.560758743640431	1
Merged-chr19-28531038-2	chr19	28530934	28531134	+	632.583374	f1_balb.idr|f1_c57bl6.idr	exon (NM_001305671, exon 3 of 10)	exon (NM_001305671, exon 3 of 10)	-147190.0	NR_045330	320176.0	Mm.406716	NR_045330	ENSMUSG00000097735	D930032P07Rik	-	RIKEN cDNA D930032P07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5818876-2	chr19	5818776	5818976	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16204.0	NR_002847	72289.0	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102453019-3	chr12	102452909	102453109	+	854.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-13196.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-147323572-2	chr5	147323472	147323672	+	836.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1132.0	NM_001039678	231903.0	Mm.291286	NM_001039678	ENSMUSG00000075543	Urad	EG231903|Prhoxnb	ureidoimidazoline (2-oxo-4-hydroxy-4-carboxy-5) decarboxylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-106651023-4	chr4	106650926	106651126	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285784)	promoter-TSS (NM_001285784)	-43.0	NM_001285783	230577.0	Mm.134029	NM_172272	ENSMUSG00000043572	Pars2	BC027073	prolyl-tRNA synthetase (mitochondrial)(putative)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-80160766-1	chr9	80160666	80160866	+	564.0	f1_c57bl6.idr	Intergenic	Intergenic	-4268.0	NM_001039546	17920.0	Mm.4040	NM_008662	ENSMUSG00000033577	Myo6	BC029719|Tlc|sv	myosin VI	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-18195262-3	chr10	18195205	18195405	+	823.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195036, intron 3 of 20)	intron (NM_001195036, intron 3 of 20)	15585.0	NM_001195036	100045792.0	Mm.380617	NM_001195036	ENSMUSG00000071392	Ect2l	C330021H03Rik|Gm10331	epithelial cell transforming sequence 2 oncogene-like	protein-coding	1.49290495721662	0.957201119067532	0.94019391478967	1.45014693327083	1.61271943862125	1.94059741090117	1.16584335128677	2.06066106045697	1.7520838555441	0.160414544466962	0.620275578212741
Merged-chr19-6233554-2	chr19	6233454	6233654	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198168, intron 3 of 13)	intron (NM_198168, intron 3 of 13)	2286.0	NM_198168	225849.0	Mm.118076	NM_198168	ENSMUSG00000024777	Ppp2r5b	B'beta|BC026670	protein phosphatase 2, regulatory subunit B', beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-13669731-3	chr8	13669642	13669842	+	789.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 1 of 23)	intron (NM_009025, intron 1 of 23)	7845.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80256244-2	chr10	80256144	80256344	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029272, intron 7 of 7)	intron (NM_029272, intron 7 of 7)	4768.0	NM_001347119	14431.0	Mm.7329	NM_010255	ENSMUSG00000020150	Gamt	AA571402|Spintz1	guanidinoacetate methyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-28261015-4	chr6	28260931	28261131	+	921.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081678, intron 1 of 5)	CpG	570.0	NM_001081678	627049.0	Mm.84441	NM_001081678	ENSMUSG00000039841	Zfp800	AA407452|Znf800	zinc finger protein 800	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75189682-2	chr11	75189582	75189782	+	680.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144491, intron 1 of 12)	intron (NM_144491, intron 1 of 12)	801.0	NM_144491	116905.0	Mm.41496	NM_144491	ENSMUSG00000078789	Dph1	2310011M22Rik|4930488F09Rik|AW551873|Dph2l1|Ovca1	diphthamide biosynthesis 1	protein-coding	-1.32440223303897	-1.29339468673833	-0.717877708899544	-1.31276353204239	-1.32392690786997	-1.29109028300231	-1.30162128075409	-1.31119997543009	-2.49510383040271	0.470258445164311	1
Merged-chr15-101264271-2	chr15	101264171	101264371	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2575.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-55007701-2	chr11	55007601	55007801	+	575.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_138556, intron 7 of 24)	intron (NR_138556, intron 7 of 24)	25770.0	NR_138556	11749.0	Mm.265347	NM_013472	ENSMUSG00000018340	Anxa6	AW107198|Anx6|AnxVI|Cabm|Camb	annexin A6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-78627390-3	chr11	78627267	78627467	+	754.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008702, intron 1 of 10)	intron (NM_008702, intron 1 of 10)	70058.0	NM_008702	18099.0	Mm.9001	NM_008702	ENSMUSG00000017376	Nlk	AI194375	nemo like kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89354164-2	chr3	89354064	89354264	+	623.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_029974, exon 10 of 16)	exon (NM_029974, exon 10 of 16)	-4136.0	NM_009614	11490.0	Mm.274049	NM_009614	ENSMUSG00000028041	Adam15	AD56|MDC15	a disintegrin and metallopeptidase domain 15 (metargidin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-149462413-3	chr4	149462317	149462517	+	966.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	-7449.0	NM_022020	63954.0	Mm.46023	NM_022020	ENSMUSG00000028996	Rbp7	1110002J23Rik|CRBP-III	retinol binding protein 7, cellular	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-52315152-2	chr14	52315052	52315252	+	682.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_015772, exon 2 of 2)	exon (NM_015772, exon 2 of 2)	1171.0	NM_001244916	50524.0	Mm.39487	NM_015772	ENSMUSG00000049532	Sall2	AI225809|AW559097|Msal-2|Sal-2|mKIAA0360|p150(Sal2)	spalt like transcription factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-65533193-4	chr3	65533059	65533259	+	952.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178892, intron 2 of 5)	intron (NM_178892, intron 2 of 5)	-3745.0	NR_027955	71004.0	Mm.475465	NM_001033527	ENSMUSG00000074580	4931440P22Rik	-	RIKEN cDNA 4931440P22 gene	ncRNA	-0.226235296896101	0.595109062818019	-0.213198233288771	-0.218068504042706	-0.225013795898844	0.608384863201147	-0.211812549537951	-0.217215065379025	0.0395006580732415	0.987233647591244	1
Merged-chr2-132596675-2	chr2	132596575	132596775	+	953.3333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1521.0	NR_033468	767814.0	Mm.371752	NR_033468	ENSMUSG00000074783	AU019990	-	expressed sequence AU019990	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-105982904-6	chr1	105982815	105983015	+	754.111084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151625, intron 2 of 2)	intron (NR_151625, intron 2 of 2)	7367.0	NR_151625	635504.0	Mm.359717	NR_151625		Gm7160	EG635504	predicted gene 7160	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-101604713-4	chr3	101604602	101604802	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144900)	promoter-TSS (NM_144900)	5.0	NM_144900	11928.0	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-119428891-4	chr13	119428794	119428994	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145457)	promoter-TSS (NM_145457)	-8.0	NM_145457	218693.0	Mm.490243	NM_145457	ENSMUSG00000025451	Paip1	PAIP-1	polyadenylate binding protein-interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-124622207-4	chr2	124622091	124622291	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291000, intron 1 of 18)	MTE2a|LTR|ERVL-MaLR	11895.0	NM_172537	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-23177503-8	chr10	23177346	23177546	+	927.2291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010167, intron 3 of 18)	intron (NM_010167, intron 3 of 18)	172444.0	NM_001347372	14051.0	Mm.332128	NM_010167	ENSMUSG00000010461	Eya4	B130023L16Rik	EYA transcriptional coactivator and phosphatase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-128083985-2	chr8	128083885	128084085	+	989.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	194240.0	NR_105822	102465212.0		NR_105822	ENSMUSG00000099326	Mir21c	Gm28013|mmu-mir-21c	microRNA 21c	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-136135581-2	chr5	136135481	136135681	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347492)	promoter-TSS (NM_001347492)	493.0	NM_027891	71735.0	Mm.425292	NM_027891	ENSMUSG00000029703	Lrwd1	1200011O22Rik|AU042569|AW548074|Orca	leucine-rich repeats and WD repeat domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-77905962-4	chr14	77905851	77906051	+	814.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029495, intron 1 of 11)	intron (NM_029495, intron 1 of 11)	1712.0	NM_029495	108670.0	Mm.68134	NM_029495	ENSMUSG00000022014	Epsti1	2310046K10Rik|5033415K03Rik|BRESI1	epithelial stromal interaction 1 (breast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-120533117-2	chr1	120533023	120533223	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28099.0	NM_010766	17167.0	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	2.57728529631274	2.32829679594179	3.56959331329529	3.2955612650059	3.09304673095904	2.34566509550751	2.2666944067822	2.7325310128211	-0.703667666822469	0.335736840520092	0.836089117450301
Merged-chr8-123750452-4	chr8	123750336	123750536	+	929.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16478.0	NR_040702	234863.0	Mm.246601	NR_040702	ENSMUSG00000110599	6030466F02Rik	-	RIKEN cDNA 6030466F02 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-6436638-2	chr11	6436538	6436738	+	786.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_029938, intron 2 of 4)	B3A|SINE|B2	7805.0	NM_029938	77605.0	Mm.27624	NM_029938	ENSMUSG00000041126	H2afv	C530002L11Rik|H2a.z-2|H2av|Tg(Wnt1-cre)11Rth|Wnt1-Cre|Wnt1::Cre|Wnt1cre	H2A histone family, member V	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55156026-2	chr14	55155926	55156126	+	742.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39091.0	NM_177049	319984.0	Mm.19047	NM_177049	ENSMUSG00000022208	Jph4	9330157P13Rik|JP-4|JPHL1	junctophilin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-16526347-4	chr16	16526232	16526432	+	887.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301817, intron 1 of 16)	intron (NM_001301817, intron 1 of 16)	1079.0	NM_001301818	224014.0	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-77944887-4	chr18	77944788	77944988	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195633, intron 1 of 43)	L1MC4a|LINE|L1	6421.0	NM_001195633	100502841.0	Mm.297782	NM_001195633	ENSMUSG00000039840	Epg5	4732475F16|5430411K18Rik|AI661957|AW456499|mKIAA1632	ectopic P-granules autophagy protein 5 homolog (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-113397889-4	chr2	113397800	113398000	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285458, intron 2 of 16)	intron (NM_001285458, intron 2 of 16)	-43164.0	NM_001285459	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-53260553-2	chr19	53260453	53260653	+	677.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5348.0	NR_036590	69319.0	Mm.57452	NR_036590		1700001K23Rik	-	RIKEN cDNA 1700001K23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-101930711-2	chr5	101930611	101930811	+	916.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 16 of 66)	intron (NM_172882, intron 16 of 66)	139210.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-51544571-4	chr6	51544432	51544632	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001127348)	promoter-TSS (NM_001127348)	9.0	NM_001127348	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-78184291-2	chr11	78184191	78184391	+	696.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207523)	promoter-TSS (NM_207523)	-707.0	NM_207523	268449.0	Mm.22723	NM_207523	ENSMUSG00000058546	Rpl23a	BC029892|MDA20	ribosomal protein L23A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-138847642-3	chr7	138847520	138847720	+	736.238098	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026391, intron 2 of 8)	intron (NM_026391, intron 2 of 8)	1234.0	NM_026391	52432.0	Mm.258739	NM_026391	ENSMUSG00000041769	Ppp2r2d	1300017E19Rik|D7Ertd753e|MDS026	protein phosphatase 2, regulatory subunit B, delta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-83415531-3	chr15	83415434	83415634	+	897.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358643, intron 1 of 9)	intron (NM_001358643, intron 1 of 9)	17316.0	NM_011862	23970.0	Mm.23978	NM_011862	ENSMUSG00000016664	Pacsin2	AI197433	protein kinase C and casein kinase substrate in neurons 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-27116819-4	chr14	27116726	27116926	+	971.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27167.0	NM_001289686	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	1.26469604033236	2.70375263245467	2.14601307834589	2.85532241001458	1.85284920803216	2.72407656686711	2.299869938901	2.09569380905851	-0.229519301750631	0.805901299409552	0.998431161219273
Merged-chr8-106415330-4	chr8	106415220	106415420	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011764)	promoter-TSS (NM_011764)	-19.0	NM_011764	22751.0	Mm.295582	NM_011764	ENSMUSG00000031907	Zfp90	6430515L01Rik|KRAB17|NK10|Zfp64|Zfp83|mKIAA1954	zinc finger protein 90	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-43681861-4	chr11	43681751	43681951	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164231)	promoter-TSS (NM_001164231)	-147.0	NM_027557	70802.0	Mm.397449	NM_027557	ENSMUSG00000044950	Pwwp2a	4631424J17Rik|AI891583|AU024105|D930040F23Rik	PWWP domain containing 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166683130-4	chr2	166683038	166683238	+	862.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	30694.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-54474253-3	chr9	54474182	54474382	+	686.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172771, intron 3 of 43)	intron (NM_172771, intron 3 of 43)	27344.0	NM_172771	235380.0	Mm.93636	NM_172771	ENSMUSG00000041268	Dmxl2	6330586A12|6430411K14Rik|E130119P06Rik|mKIAA0856	Dmx-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-56973257-4	chr1	56973167	56973367	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_024325, exon 1 of 1)	non-coding (NR_024325, exon 1 of 1)	1798.0	NR_024326	329160.0	Mm.419039	NR_024325	ENSMUSG00000087022	9130024F11Rik	B530002L08|EG329160	RIKEN cDNA 9130024F11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46329276-2	chr19	46329176	46329376	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001164295)	TTS (NM_001164295)	1092.0	NM_133694	68431.0	Mm.19973	NM_133694	ENSMUSG00000025226	Fbxl15	0710008C12Rik|Fbxo37	F-box and leucine-rich repeat protein 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-119840607-4	chr8	119840494	119840694	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028071)	promoter-TSS (NM_028071)	-15.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127587895-4	chr10	127587800	127588000	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 15 of 88)	intron (NM_008512, intron 15 of 88)	33248.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-57219284-4	chr17	57219119	57219319	+	969.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009778, intron 19 of 40)	B4A|SINE|B4	-1991.0	NR_105944	102465591.0		NR_105944	ENSMUSG00000099066	Mir6978	Gm27858|mmu-mir-6978	microRNA 6978	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-61344717-4	chr3	61344607	61344807	+	974.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-19800.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-31195504-3	chr7	31195393	31195593	+	802.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16|LTR|ERVK	33135.0	NR_046062	100038516.0	Mm.387223	NR_046062	ENSMUSG00000100985	Gm10640	EG668322	predicted gene 10640	ncRNA	-1.31349849087795	-1.28274354783242	-1.29349452597086	-1.3023256995151	-1.3130151546297	-1.28041376602105	-0.694015972326031	-1.30074492367298	2.57396649482007	0.456321314346772	1
Merged-chr9-78113279-4	chr9	78113175	78113375	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019987)	promoter-TSS (NM_019987)	37.0	NM_019987	56542.0	Mm.288719	NM_019987	ENSMUSG00000009828	Ick	2210420N10Rik|AI848300|Mrk	intestinal cell kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-124210468-2	chr1	124210368	124210568	+	669.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-164909.0	NM_199021	269109.0	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-74952916-4	chr9	74952831	74953031	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113283)	promoter-TSS (NM_001113283)	51.0	NR_153342	235493.0	Mm.208955	NM_153584	ENSMUSG00000034858	Fam214a	6330415I01Rik|AI553555|C130047D21Rik|Kiaa1370|mKIAA1370	family with sequence similarity 214, member A	protein-coding	6.01320869086946	6.14345306306018	6.11409727524584	5.73808289802599	4.76248131443957	5.43871685791562	5.7714265079828	5.6716004335047	-0.620487525589477	0.0248805243553586	0.20855835902347
Merged-chr13-47231277-4	chr13	47231152	47231352	+	965.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146042, intron 4 of 7)	intron (NM_146042, intron 4 of 7)	37249.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	4.15944422925964	4.60081879825612	4.26621215564503	5.24296382973009	5.63762269517092	5.61976831878019	5.1523730408882	5.29454399564715	0.954515610948594	0.0058342561954006	0.0753221727034609
Merged-chr16-17409697-3	chr16	17409599	17409799	+	948.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023348, intron 1 of 4)	intron (NM_023348, intron 1 of 4)	-3385.0	NM_001001983	224020.0	Mm.5718	NM_001001983	ENSMUSG00000041720	Pi4ka	Pik4ca	phosphatidylinositol 4-kinase alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44361711-4	chr9	44361587	44361787	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357393)	promoter-TSS (NM_001357393)	-17.0	NM_027889	71732.0	Mm.295013	NM_027889	ENSMUSG00000032127	Vps11	1200011A11Rik	VPS11, CORVET/HOPS core subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-142883032-4	chr2	142882930	142883130	+	848.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355123, intron 1 of 26)	intron (NM_001355123, intron 1 of 26)	18434.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-96712588-2	chr15	96712488	96712688	+	816.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-12860.0	NM_175121	67760.0	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-116433906-4	chr12	116433788	116433988	+	975.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133762, intron 16 of 28)	intron (NM_133762, intron 16 of 28)	28486.0	NM_133762	76044.0	Mm.491196	NM_133762	ENSMUSG00000042029	Ncapg2	5830426I05Rik|Luzp5|Mtb|mCAP-G2	non-SMC condensin II complex, subunit G2	protein-coding	6.01222018316173	5.73703222046878	6.12334934075859	5.41861506569237	4.32224352294646	4.60602848620208	4.99881416358982	4.72973646328254	-1.35438099360375	9.63582457225691e-06	0.00044694828563636
Merged-chr4-124709153-4	chr4	124709030	124709230	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010213)	TTS (NM_010213)	-5731.0	NM_029157	75062.0	Mm.25779	NM_029157	ENSMUSG00000028902	Sf3a3	4930512K19Rik|60kDa	splicing factor 3a, subunit 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-62539644-1	chr11	62539544	62539744	+	546.0	f1_c57bl6.idr	promoter-TSS (NM_028448)	promoter-TSS (NM_028448)	-383.0	NM_028448	73139.0	Mm.390409	NM_028448	ENSMUSG00000018509	Cenpv	3110013H01Rik|AA671303|Prr6	centromere protein V	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-72085080-4	chr12	72085043	72085243	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001205067)	promoter-TSS (NM_001205067)	170.0	NM_026038	67217.0	Mm.286120	NM_026038	ENSMUSG00000019718	L3hypdh	2810055F11Rik	L-3-hydroxyproline dehydratase (trans-)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-92256706-4	chr5	92256605	92256805	+	935.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011148)	promoter-TSS (NM_011148)	-427.0	NM_011148	19023.0	Mm.87155	NM_011148	ENSMUSG00000029410	Ppef2	-	protein phosphatase, EF hand calcium-binding domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-27273434-2	chr3	27273334	27273534	+	572.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR40|LTR|ERVK	-43643.0	NM_009425	22035.0	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-51362786-4	chr6	51362686	51362886	+	927.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16924.0	NR_110455	625167.0	Mm.389772	NR_110455	ENSMUSG00000107660	Gm6559	EG625167	predicted gene 6559	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-24803395-2	chr13	24803264	24803464	+	886.5	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_024473, exon 1 of 5)	5' UTR (NM_024473, exon 1 of 5)	1707.0	NM_024473	79555.0	Mm.266668	NM_024473	ENSMUSG00000019132	BC005537	8030460C05Rik|C78201	cDNA sequence BC005537	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-8989043-4	chr3	8988945	8989145	+	850.44165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009412, intron 1 of 5)	ORR1E|LTR|ERVL-MaLR	15159.0	NM_001357073	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	2.56690588871139	2.53013854467305	1.70470031752052	3.53096770328672	2.92012727770606	2.39745263872985	1.43578873999201	3.27314906941928	-0.139452962417299	0.874963053929246	0.998431161219273
Merged-chr8-45333247-4	chr8	45333140	45333340	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133969)	promoter-TSS (NM_133969)	-44.0	NM_133969	102294.0	Mm.245297	NM_133969	ENSMUSG00000079057	Cyp4v3	AU043077|AW111961|Cyp4v2	cytochrome P450, family 4, subfamily v, polypeptide 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-60043349-2	chr1	60043249	60043449	+	603.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001316694)	promoter-TSS (NM_001316694)	-227.0	NM_001316695	70375.0	Mm.17834	NM_027407	ENSMUSG00000026018	Ica1l	1700030B17Rik|Als2cr15|b2b3465Clo	islet cell autoantigen 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-40879494-1	chr17	40879394	40879594	+	580.0	f1_balb.idr	intron (NM_027834, intron 1 of 1)	intron (NM_027834, intron 1 of 1)	1064.0	NM_027834	71583.0	Mm.158733	NM_027834	ENSMUSG00000054951	9130008F23Rik	-	RIKEN cDNA 9130008F23 gene	protein-coding	-0.662826441749988	-1.00555184936033	-1.01675512286785	-1.01992432642343	-0.654846858003193	-1.00312405325568	-1.01421894731451	-1.01959449741028	0.0418081237259606	0.989738874530268	1
Merged-chr2-59184689-4	chr2	59184595	59184795	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 1 of 20)	intron (NM_175464, intron 1 of 20)	23845.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-113343067-2	chr6	113342967	113343167	+	754.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133926, intron 1 of 11)	intron (NM_133926, intron 1 of 11)	855.0	NM_133926	52163.0	Mm.277373	NM_133926	ENSMUSG00000030272	Camk1	AI505105|CaMKIalpha|D6Ertd263e	calcium/calmodulin-dependent protein kinase I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-119297228-1	chr2	119297128	119297328	+	721.0	f1_c57bl6.idr	exon (NM_172269, exon 5 of 5)	exon (NM_172269, exon 5 of 5)	8486.0	NM_172269	228545.0	Mm.294761	NM_172269	ENSMUSG00000034216	Vps18	9930024E13Rik	VPS18 CORVET/HOPS core subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-53397105-2	chr17	53397005	53397205	+	602.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	66216.0	NM_172497	211482.0	Mm.60887	NM_172497	ENSMUSG00000023931	Efhb	4921525D22Rik	EF hand domain family, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-20772994-1	chr15	20772894	20773094	+	546.0	f1_balb.idr	Intergenic	L1_Mus1|LINE|L1	-106244.0	NM_022816	64833.0	Mm.352763	NM_022816	ENSMUSG00000047565	Acot10	Acate3|MT-ACT48|p48	acyl-CoA thioesterase 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-100833995-3	chr6	100833916	100834116	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_182939, intron 1 of 8)	CpG	378.0	NM_182939	232314.0	Mm.27223	NM_182939	ENSMUSG00000052144	Ppp4r2	BE691708|C230060M08Rik	protein phosphatase 4, regulatory subunit 2	protein-coding	4.64679707010442	3.92827987637861	3.21819977105263	4.46963522238252	4.44879166958563	3.95679471653948	3.36206639075698	4.10353076463219	-0.205701611029864	0.678481480556966	0.994999283375466
Merged-chr4-11454099-4	chr4	11453997	11454197	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31861.0	NM_001081183	66185.0	Mm.331487	NM_001081183	ENSMUSG00000040720	Virma	1110037F02Rik|4930422M05Rik|Kiaa1429|mKIAA1429	vir like m6A methyltransferase associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91396811-2	chr16	91396739	91396939	+	969.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347258, intron 7 of 7)	intron (NM_001347258, intron 7 of 7)	-9396.0	NM_008349	16155.0	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-114782146-4	chr6	114782029	114782229	+	815.770813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253718, intron 19 of 19)	intron (NM_001253718, intron 19 of 19)	139032.0	NM_001253718	74244.0	Mm.275332	NM_028835	ENSMUSG00000030314	Atg7	1810013K23Rik|Agp7|Apg7l|Atg7l|Gm21553	autophagy related 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-78297776-4	chr10	78297688	78297888	+	939.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053014, intron 2 of 9)	intron (NM_053014, intron 2 of 9)	42419.0	NR_106119	102465765.0		NR_106119	ENSMUSG00000098885	Mir7659	Gm27433|mmu-mir-7659	microRNA 7659	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117786407-2	chr11	117786307	117786507	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001195088, exon 8 of 16)	exon (NM_001195088, exon 8 of 16)	3749.0	NM_001195088	217356.0	Mm.116675	NM_181856	ENSMUSG00000050106	Tmc8	EVIN2|Ever2|mFLJ00400	transmembrane channel-like gene family 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-100197161-4	chr13	100197056	100197256	+	999.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001126182, intron 1 of 15)	intron (NM_001126182, intron 1 of 15)	4966.0	NM_001126182	17948.0	Mm.89961	NM_010872	ENSMUSG00000078945	Naip2	Birc1b|Naip-rs6	NLR family, apoptosis inhibitory protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-155903699-2	chr1	155903602	155903802	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039184, intron 22 of 37)	RMER1B|Other|Other	69553.0	NM_001039184	74081.0	Mm.260247	NM_001039184	ENSMUSG00000033671	Cep350	4933409L06Rik|6430546F08Rik	centrosomal protein 350	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-180070589-4	chr2	180070429	180070629	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001083328)	promoter-TSS (NM_001083328)	-64.0	NM_001083328	52856.0	Mm.219658	NM_028422	ENSMUSG00000039069	Mtg2	1810011P19Rik|2900056P18Rik|D2Bwg0647e|Gtpbp5	mitochondrial ribosome associated GTPase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-88863221-4	chr15	88863141	88863341	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_145478, exon 4 of 6)	exon (NM_145478, exon 4 of 6)	1047.0	NM_145478	223775.0	Mm.400129	NM_145478	ENSMUSG00000035828	Pim3	BC026639|Kid1	proviral integration site 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72364284-2	chr6	72364184	72364384	+	952.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001331167, intron 1 of 5)	B2_Mm2|SINE|B2	-1852.0	NM_001331173	66510.0	Mm.170023	NM_025607	ENSMUSG00000055850	Rnf181	1700047F16Rik|2500002L14Rik|6230415N01Rik|C77350	ring finger protein 181	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35471044-1	chr17	35470944	35471144	+	761.5	f0_balb.idr	exon (NM_010391, exon 3 of 7)	exon (NM_010391, exon 3 of 7)	955.0	NM_010391	15007.0	Mm.88795	NM_010391	ENSMUSG00000067235	H2-Q10	H-2Q10|Q10|Qa10	histocompatibility 2, Q region locus 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-91299189-4	chr1	91299131	91299331	+	849.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016717, intron 1 of 11)	intron (NM_016717, intron 1 of 11)	893.0	NM_016717	50880.0	Mm.25724	NM_016717	ENSMUSG00000026307	Scly	9830169H08|A930015N15Rik|SCL|Scly1|Scly2	selenocysteine lyase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-57366978-4	chr14	57366903	57367103	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030004, intron 2 of 7)	intron (NM_030004, intron 2 of 7)	31480.0	NM_030004	68631.0	Mm.25539	NM_030004	ENSMUSG00000021947	Cryl1	1110025H08Rik|A230106J09Rik|C85932|gul3dh	crystallin, lambda 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-67041554-2	chr6	67041454	67041654	+	870.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_040278, intron 1 of 6)	MTC|LTR|ERVL-MaLR	-4147.0	NM_007836	13197.0	Mm.72235	NM_007836	ENSMUSG00000036390	Gadd45a	AA545191|Ddit1|GADD45	growth arrest and DNA-damage-inducible 45 alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-45657366-6	chr14	45657299	45657499	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_039593)	TTS (NR_039593)	654.0	NR_039593	100628600.0		NR_039593	ENSMUSG00000093167	Mir5131	mmu-mir-5131|mu-mir-5131	microRNA 5131	ncRNA	2.3117053147961	2.43960724577233	2.43997737235024	2.36580628085745	1.45768006294857	1.13911026982209	1.11114051262073	1.3310174617887	-3.62254699596625	0.00208645235185133	0.0345127600884819
Merged-chr4-89124137-3	chr4	89124004	89124204	+	731.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151607, intron 1 of 3)	intron (NR_151607, intron 1 of 3)	4122.0	NR_151607	102637941.0	Mm.366358	NR_151607		Gm12602	-	predicted gene 12602	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67548278-6	chr10	67548213	67548413	+	990.2777710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001005419, exon 1 of 1)	exon (NM_001005419, exon 1 of 1)	642.0	NM_001005419	211488.0	Mm.297250	NM_001005419	ENSMUSG00000057134	Ado	Gm237	2-aminoethanethiol (cysteamine) dioxygenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-74527381-4	chr17	74527269	74527469	+	946.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007566)	promoter-TSS (NM_007566)	-926.0	NM_007566	12211.0	Mm.442564	NM_007566	ENSMUSG00000024073	Birc6	A430032G04Rik|A430040A19Rik|AA501170|Bruce|D630005A10Rik|mKIAA1289	baculoviral IAP repeat-containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-22700824-2	chr8	22700725	22700925	+	693.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159774, intron 2 of 21)	intron (NM_001159774, intron 2 of 21)	5758.0	NM_010546	16150.0	Mm.277886	NM_010546	ENSMUSG00000031537	Ikbkb	AI132552|IKK-2|IKK-beta|IKK2|IKK[b]|IKKbeta	inhibitor of kappaB kinase beta	protein-coding	-0.662826441749988	-1.00555184936033	-1.01675512286785	-1.01992432642343	-0.654846858003193	-1.00312405325568	-1.01421894731451	-1.01959449741028	0.0418081237259606	0.989738874530268	1
Merged-chr19-10759734-4	chr19	10759629	10759829	+	667.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027805, intron 1 of 3)	L2a|LINE|L2	18782.0	NR_027805	403202.0	Mm.34482	NM_207529	ENSMUSG00000067577	A430093F15Rik	Gm674	RIKEN cDNA A430093F15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-45110389-4	chr2	45110286	45110486	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_110572)	promoter-TSS (NR_110572)	-9.0	NM_001355291	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-30771780-1	chr10	30771680	30771880	+	571.0	f0_balb.idr	5' UTR (NM_001358841, exon 2 of 16)	5' UTR (NM_001358841, exon 2 of 16)	31546.0	NM_001358841	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71380570-4	chr8	71380464	71380664	+	881.7976070000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_010150, intron 1 of 3)	CpG	1388.0	NM_010150	13864.0	Mm.28989	NM_010150	ENSMUSG00000002393	Nr2f6	AV090102|COUP-TF3|EAR2|Erbal2	nuclear receptor subfamily 2, group F, member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-65401758-4	chr5	65401645	65401845	+	862.68335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024471, intron 7 of 10)	intron (NM_024471, intron 7 of 10)	10248.0	NM_001310612	79464.0	Mm.195776	NM_024471	ENSMUSG00000029199	Lias	2900022L22Rik|4933425M12Rik|7a5ex|C77512|LS|lip-syn	lipoic acid synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-46974273-2	chr7	46974173	46974373	+	720.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_015609, intron 1 of 1)	Lx5b|LINE|L1	1638.0	NR_015609	97402.0	Mm.22314	NR_015609	ENSMUSG00000110001	C86187	-	expressed sequence C86187	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-37803388-4	chr13	37803289	37803489	+	949.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB3|LINE|L1	-22649.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-64360691-4	chr1	64360604	64360804	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-172100.0	NM_009952	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-101618141-3	chr3	101618076	101618276	+	718.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-13469.0	NM_144900	11928.0	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding	0.544382362791272	0.299833196731255	0.468595994769319	0.912122482824843	0.551161984485397	0.301309864462833	0.294725179156677	0.919972586130611	-0.182326133894087	0.919457003713692	1
Merged-chr12-75637200-3	chr12	75637090	75637290	+	859.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028203, intron 1 of 1)	intron (NM_028203, intron 1 of 1)	-5441.0	NR_038063	665931.0	Mm.341719	NR_038063		Rplp2-ps1	Gm7852	ribosomal protein, large P2, pseudogene 1	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-32963530-2	chr14	32963430	32963630	+	602.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001146022, intron 57 of 58)	intron (NM_001146022, intron 57 of 58)	-27852.0	NM_001146021	67580.0	Mm.46115	NM_026253	ENSMUSG00000041673	Lrrc18	4930442L21Rik|MTLR1	leucine rich repeat containing 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-104742776-4	chr2	104742637	104742837	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144804)	promoter-TSS (NM_144804)	64.0	NM_144804	211896.0	Mm.288805	NM_144804	ENSMUSG00000027173	Depdc7	AV216087	DEP domain containing 7	protein-coding	4.45250688055281	4.98085005792186	4.98103835970348	4.06715313185622	4.01022139426515	5.29744122691725	4.27897673017267	3.80361656981889	-0.245903360952417	0.581242615103509	0.966599221005409
Merged-chr4-120879663-4	chr4	120879540	120879740	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_182929, intron 3 of 7)	MIR3|SINE|MIR	24841.0	NM_182929	242662.0	Mm.192502	NM_182929	ENSMUSG00000032890	Rims3	A730060M23Rik|Nim3|Rim3|mKIAA0237	regulating synaptic membrane exocytosis 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-105757568-2	chr3	105757471	105757671	+	569.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145541, intron 1 of 7)	intron (NM_145541, intron 1 of 7)	43810.0	NM_145541	109905.0	Mm.101922	NM_145541	ENSMUSG00000068798	Rap1a	AI848598|G-22K|Krev-1|Rap1	RAS-related protein 1a	protein-coding	0.421654761772565	0.898623191437773	0.163368393602374	0.325670829635679	0.151578977846166	0.677747553749596	0.164761741319011	0.328742598412657	-0.902152483120025	0.633217713378273	1
Merged-chr9-61119317-3	chr9	61119179	61119379	+	948.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER20C_Mm|LTR|ERVK	-13893.0	NR_105026	66785.0	Mm.158134	NR_105026	ENSMUSG00000111807	4933433G08Rik	-	RIKEN cDNA 4933433G08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-20831112-4	chr9	20830985	20831185	+	695.604187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12581.0	NM_001030290	235033.0	Mm.297661	NM_001030290	ENSMUSG00000053773	Rdh8	Gm182|prRDH	retinol dehydrogenase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117283591-2	chr8	117283491	117283691	+	581.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	26572.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-15055141-4	chr2	15055031	15055231	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029466)	promoter-TSS (NM_029466)	-231.0	NM_029466	75869.0	Mm.174068	NM_029466	ENSMUSG00000017418	Arl5b	4930587A11Rik|AW146430|Arl8	ADP-ribosylation factor-like 5B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-114942221-4	chr5	114942122	114942322	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028211)	promoter-TSS (NM_028211)	20.0	NM_028211	72357.0	Mm.292672	NM_028211	ENSMUSG00000029559	2210016L21Rik	-	RIKEN cDNA 2210016L21 gene	protein-coding	-1.18378942727406	-1.15669478905697	-0.457913181653105	-1.17806440097404	-1.18323730008524	-1.15415234459186	-1.16577117532349	-1.17633933179771	-2.81844548480871	0.412768592413622	1
Merged-chr15-58140968-1	chr15	58140868	58141068	+	1000.0	f0_balb.idr	promoter-TSS (NM_001326599)	promoter-TSS (NM_001326599)	-398.0	NM_001326602	76773.0	Mm.26771	NM_029734	ENSMUSG00000022359	Wdyhv1	2410187C16Rik|AU014961|AW550036|Ntaq1	WDYHV motif containing 1	protein-coding	2.36706097034331	2.66874744455103	1.95023534205295	2.50059680748458	3.70529461016019	3.01682371401595	2.15753508754391	2.08854581909632	1.04031539824177	0.196298040443301	0.677629928399006
Merged-chr8-120113583-1	chr8	120113483	120113683	+	1000.0	f0_balb.idr	promoter-TSS (NM_001163762)	promoter-TSS (NM_001163762)	-569.0	NM_001163762	234797.0	Mm.101958	NM_172286	ENSMUSG00000031824	6430548M08Rik	AW049007|Kiaa0513|mKIAA0513	RIKEN cDNA 6430548M08 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-17587901-4	chr17	17587799	17587999	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172827, intron 1 of 17)	intron (NM_172827, intron 1 of 17)	36590.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-157513823-4	chr2	157513745	157513945	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46233.0	NM_001291129	18111.0	Mm.34330	NM_010923	ENSMUSG00000067786	Nnat	5730414I02Rik|AW107673|Peg5	neuronatin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-12318260-3	chr12	12318176	12318376	+	676.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146119, intron 2 of 11)	intron (NM_001146119, intron 2 of 11)	56137.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-80200593-2	chr11	80200493	80200693	+	944.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_028019)	TTS (NM_028019)	-8462.0	NM_001163354	59040.0	Mm.489674	NM_021536	ENSMUSG00000017686	Rhot1	2210403N23Rik|AA415293|AF244542|AI834919|Arht1|C430039G08Rik|Miro1	ras homolog family member T1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-121650650-2	chr8	121650550	121650750	+	689.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_080855, intron 1 of 12)	intron (NM_080855, intron 1 of 12)	1283.0	NM_080855	142682.0	Mm.103202	NM_080855	ENSMUSG00000061410	Zcchc14	AA792890|BDG29	zinc finger, CCHC domain containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-83594596-4	chr8	83594479	83594679	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027179)	promoter-TSS (NM_027179)	-88.0	NM_134118	106529.0	Mm.352239	NM_027179	ENSMUSG00000031708	Tecr	2410016D23Rik|A230102P12Rik|AI173355|D17Ertd178e|Gpsn2|SC2	trans-2,3-enoyl-CoA reductase	protein-coding	5.6675050373332	5.4481413848245	5.98898859336857	6.23989674413	5.78118500609381	5.48330516668055	6.31890784552077	5.47935441790824	-0.0674534714697661	0.810947645098116	0.998431161219273
Merged-chr6-72511595-2	chr6	72511495	72511695	+	563.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32796.0	NM_007599	12332.0	Mm.18626	NM_007599	ENSMUSG00000056737	Capg	gCap39|mbh1	capping protein (actin filament), gelsolin-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-8715000-6	chr19	8714890	8715090	+	956.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161413, intron 1 of 9)	intron (NM_001161413, intron 1 of 9)	-1093.0	NM_008577	17254.0	Mm.4114	NM_008577	ENSMUSG00000010095	Slc3a2	4F2|4F2HC|AI314110|Cd98|Ly-10|Ly-m10|Ly10|Mdu1|Mgp-2hc|NACAE	solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-72229168-3	chr1	72229070	72229270	+	939.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14823.0	NR_155355	320933.0	Mm.440953	NR_155355		D230017M19Rik	B930094L07Rik	RIKEN cDNA D230017M19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-107469122-4	chr11	107469083	107469283	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 1 of 9)	CpG	1537.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-40215617-2	chr12	40215517	40215717	+	659.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013562, intron 4 of 11)	B4A|SINE|B4	7194.0	NR_035459	100316693.0		NR_035459	ENSMUSG00000089371	Mir1938	mir-1938|mmu-mir-1938	microRNA 1938	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-136244944-4	chr5	136244850	136245050	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302939)	promoter-TSS (NM_001302939)	-10.0	NM_018825	23921.0	Mm.425294	NM_018825	ENSMUSG00000005057	Sh2b2	Aps	SH2B adaptor protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80901278-4	chr7	80901169	80901369	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027976)	promoter-TSS (NR_027976)	0.0	NR_152101	71968.0	Mm.274226	NM_028026	ENSMUSG00000025722	Wdr73	1200011I23Rik|2410008B13Rik|AI848574|C85352	WD repeat domain 73	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-8604947-4	chr11	8604830	8605030	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 2 of 30)	intron (NM_001083587, intron 2 of 30)	59605.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120902151-2	chr11	120902051	120902251	+	823.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_027745, intron 6 of 18)	intron (NM_027745, intron 6 of 18)	30721.0	NM_027745	71276.0	Mm.275751	NM_027745	ENSMUSG00000048445	Ccdc57	4933434G05Rik	coiled-coil domain containing 57	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-48333005-6	chr2	48332868	48333068	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-481141.0	NM_007396	11480.0	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-142459209-2	chr7	142459109	142459309	+	564.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1603.0	NM_001271510	16985.0	Mm.234003	NM_019391	ENSMUSG00000018819	Lsp1	Lsp-1|WP34|p50|pp52	lymphocyte specific 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-27345707-4	chr3	27345616	27345816	+	975.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25635.0	NM_177330	208188.0	Mm.194721	NM_177330	ENSMUSG00000051136	Ghsr	C530020I22Rik|GHRP|GHS-R|Ghsr1a	growth hormone secretagogue receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-93655371-2	chr1	93655271	93655471	+	628.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19644.0	NM_021537	59041.0	Mm.28761	NM_021537	ENSMUSG00000026277	Stk25	1500019J11Rik|AU018434|C86992|Ste20-like|Ysk1	serine/threonine kinase 25 (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-12589192-2	chr13	12589105	12589305	+	688.625	f0_balb.idr|f0_c57.idr	intron (NM_026184, intron 6 of 15)	B3|SINE|B2	23322.0	NM_026184	67475.0	Mm.358706	NM_026184	ENSMUSG00000057069	Ero1lb	1300013B24Rik|1700065B09Rik|AI447560|Ero1b|ero1-beta	ERO1-like beta (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-104986397-1	chr1	104986297	104986497	+	638.0	f1_balb.idr	intron (NM_011800, intron 11 of 11)	intron (NM_011800, intron 11 of 11)	217877.0	NM_011800	23836.0	Mm.103640	NM_011800	ENSMUSG00000050840	Cdh20	Cdh7	cadherin 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106967785-2	chr11	106967685	106967885	+	743.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31740.0	NM_010655	16647.0	Mm.12508	NM_010655	ENSMUSG00000018362	Kpna2	2410044B12Rik|IPOA1|PTAC58|Rch1	karyopherin (importin) alpha 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106980654-2	chr11	106980558	106980758	+	839.1666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18867.0	NM_010655	16647.0	Mm.12508	NM_010655	ENSMUSG00000018362	Kpna2	2410044B12Rik|IPOA1|PTAC58|Rch1	karyopherin (importin) alpha 2	protein-coding	1.42233440323444	2.29983775115029	1.53209664141896	2.72440111672709	2.36366148645188	1.31209695125127	2.8279807715098	2.57855070206273	0.589947395876127	0.554720767237758	0.959914380895535
Merged-chr1-106404131-2	chr1	106404034	106404234	+	741.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RodERV21-int|LTR|ERV1	142497.0	NR_106164	102466254.0		NR_106164	ENSMUSG00000098344	Mir3473f	Gm27846|mmu-mir-3473f	microRNA 3473f	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-136326060-4	chr3	136325941	136326141	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310749)	promoter-TSS (NM_001310749)	25.0	NM_001310749	242248.0	Mm.30832	NM_001033350	ENSMUSG00000037922	Bank1	A530094C12Rik|AI451642|AVIEF|BANK	B cell scaffold protein with ankyrin repeats 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-99974201-2	chr5	99974101	99974301	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077266, intron 1 of 7)	intron (NM_001077266, intron 1 of 7)	4737.0	NM_001077266	11991.0	Mm.150231	NM_007516	ENSMUSG00000000568	Hnrnpd	Auf1|Hnrpd	heterogeneous nuclear ribonucleoprotein D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-94594425-3	chr8	94594351	94594551	+	620.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028221, intron 1 of 7)	intron (NM_028221, intron 1 of 7)	7275.0	NM_028221	102122.0	Mm.250425	NM_028221	ENSMUSG00000031774	Fam192a	1700001O11Rik|2310065K24Rik|AI596259|Nip30	family with sequence similarity 192, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-79011186-2	chr12	79011087	79011287	+	671.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-3910.0	NM_178745	268567.0	Mm.341747	NM_178745	ENSMUSG00000046157	Tmem229b	6330442E10Rik|9830138K24|AU019070	transmembrane protein 229B	protein-coding	-1.09872745961213	-1.07699347173527	-1.08829787554085	-0.558152922054368	-1.09823656754642	-1.07454376027315	-0.909664618057294	-1.09507564564359	-1.63765106953622	0.612363938142247	1
Merged-chr18-53253942-2	chr18	53253842	53254042	+	969.5833130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_029394, intron 1 of 6)	intron (NM_029394, intron 1 of 6)	8280.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-115000673-4	chr4	115000571	115000771	+	828.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304551, intron 1 of 15)	intron (NM_001304551, intron 1 of 15)	553.0	NM_001304555	20460.0	Mm.3988	NM_009185	ENSMUSG00000028718	Stil	Sil	Scl/Tal1 interrupting locus	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70821175-2	chr8	70821074	70821274	+	616.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008353, exon 16 of 16)	3' UTR (NM_008353, exon 16 of 16)	12725.0	NM_008353	16161.0	Mm.731	NM_008353	ENSMUSG00000000791	Il12rb1	CD212|IL-12R[b]	interleukin 12 receptor, beta 1	protein-coding	0.418157338100248	0.446127663996216	0.437053430950621	0.894335877896541	0.419928005527458	1.11904467514742	1.1740459532809	1.01731605363447	2.2850174852331	0.204966404290321	1
Merged-chr1-89451325-2	chr1	89451225	89451425	+	673.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-3486.0	NM_178119	347722.0	Mm.291135	NM_178119	ENSMUSG00000055013	Agap1	Centg2|Ggap1|R75364|mKIAA1099	ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-4537032-2	chr5	4536932	4537132	+	785.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	221184.0	NM_021457	14362.0	Mm.246003	NM_021457	ENSMUSG00000044674	Fzd1	AW227548|FZ-1|Fz1	frizzled class receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-50239301-4	chr11	50239158	50239358	+	999.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008521)	promoter-TSS (NM_008521)	-726.0	NR_132733	17001.0	Mm.245151	NM_008521	ENSMUSG00000020377	Ltc4s	-	leukotriene C4 synthase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131339916-3	chr1	131339805	131340005	+	987.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081011, intron 10 of 22)	intron (NM_001081011, intron 10 of 22)	-60342.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-100395895-4	chr9	100395805	100396005	+	850.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	90568.0	NM_001033543	213208.0	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	0.141154598147935	0.169292577037805	1.22234195175909	0.153127271134943	0.47183172688987	1.01691401814641	0.162233937205782	0.154372811374856	-0.129591850682915	0.94913354618292	1
Merged-chr10-53377209-4	chr10	53377108	53377308	+	923.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001204983, intron 1 of 12)	intron (NM_001204983, intron 1 of 12)	2643.0	NM_001204983	100038725.0	Mm.441403	NM_001204983	ENSMUSG00000038594	Cep85l	Gm9766	centrosomal protein 85-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-121379054-2	chr10	121378954	121379154	+	711.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029364, intron 6 of 13)	intron (NM_029364, intron 6 of 13)	13964.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-37868869-3	chr16	37868745	37868945	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177093, exon 1 of 4)	exon (NM_177093, exon 1 of 4)	445.0	NM_177093	320184.0	Mm.390882	NM_177093	ENSMUSG00000034158	Lrrc58	1810012N18Rik|C330018J07Rik	leucine rich repeat containing 58	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-120001358-2	chr9	120001222	120001422	+	775.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	-16580.0	NM_153287	215418.0	Mm.491094	NM_153287	ENSMUSG00000032515	Csrnp1	4931429D10Rik|Axud1|CSRNP-1|URAX1|taip-3	cysteine-serine-rich nuclear protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-124037933-4	chr9	124037859	124038059	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR26B_MM|LTR|ERVK	15988.0	NM_009914	12771.0	Mm.57050	NM_009914	ENSMUSG00000035448	Ccr3	CC-CKR3|CKR3|Cmkbr1l2|Cmkbr3	chemokine (C-C motif) receptor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-66297630-3	chr15	66297525	66297725	+	707.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11401.0	NM_152923	110862.0	Mm.255585	NM_152923	ENSMUSG00000056258	Kcnq3	-	potassium voltage-gated channel, subfamily Q, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-85748905-4	chr9	85748814	85749014	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175371, intron 1 of 27)	CpG	420.0	NM_001081282	108837.0	Mm.22315	NM_175371	ENSMUSG00000035941	Ibtk	5430411K16Rik|AA409502|BTKI|mKIAA1417	inhibitor of Bruton agammaglobulinemia tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97995943-4	chr6	97995846	97996046	+	952.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001178049, intron 4 of 9)	intron (NM_001178049, intron 4 of 9)	4163.0	NM_008601	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123125826-3	chr5	123125713	123125913	+	863.638916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175092, intron 2 of 4)	intron (NM_175092, intron 2 of 4)	6816.0	NM_175092	23912.0	Mm.253876	NM_175092	ENSMUSG00000029449	Rhof	AI845056|AV026554|Arhf|Ifld1|Rif	ras homolog family member F (in filopodia)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-44345587-3	chr2	44345504	44345704	+	872.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301831, intron 13 of 14)	intron (NM_001301831, intron 13 of 14)	-280280.0	NR_040622	320872.0	Mm.445023	NR_040622	ENSMUSG00000085089	Arhgap15os	A430092G05Rik	Rho GTPase activating protein 15, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-163616403-2	chr2	163616303	163616503	+	592.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_131225, exon 4 of 4)	non-coding (NR_131225, exon 4 of 4)	9191.0	NM_001305803	76080.0	Mm.89828	NM_029512	ENSMUSG00000017679	Ttpal	3110080A02Rik|5830472M02Rik	tocopherol (alpha) transfer protein-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116409223-2	chr11	116409123	116409323	+	871.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_027258, intron 1 of 18)	L1M4|LINE|L1	3809.0	NM_027258	217340.0	Mm.426344	NM_027258	ENSMUSG00000052949	Rnf157	2610036E23Rik|A130073L17Rik|mKIAA1917	ring finger protein 157	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-84324701-4	chr15	84324563	84324763	+	865.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022321)	promoter-TSS (NM_022321)	-57.0	NM_022321	64099.0	Mm.251356	NM_022321	ENSMUSG00000022439	Parvg	AI413459	parvin, gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-105994865-2	chr1	105994765	105994965	+	729.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001122675, intron 1 of 12)	intron (NM_001122675, intron 1 of 12)	4459.0	NM_001122675	227449.0	Mm.210188	NM_001122675	ENSMUSG00000038866	Zcchc2	9930114B20Rik|AW212015	zinc finger, CCHC domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-92930333-1	chr13	92930233	92930433	+	696.333313	f0_c57.idr	Intergenic	Intergenic	85546.0	NM_001162945	382793.0	Mm.296770	NM_001162945	ENSMUSG00000021704	Mtx3	4930470O13Rik|AA409304|AI853833|AU067765|EG624619|Gm1194|Gm6514	metaxin 3	protein-coding	1.69347146326388	1.33551110519403	2.80816643388126	1.23955792936028	1.17642244860718	0.832699461334447	1.2941859303765	0.787377134408022	-2.89475522411609	0.023811126152818	0.202040941712525
Merged-chr4-120882981-2	chr4	120882881	120883081	+	882.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_182929, intron 3 of 7)	intron (NM_182929, intron 3 of 7)	28182.0	NM_182929	242662.0	Mm.192502	NM_182929	ENSMUSG00000032890	Rims3	A730060M23Rik|Nim3|Rim3|mKIAA0237	regulating synaptic membrane exocytosis 3	protein-coding	2.37949718750071	2.67403258568251	3.13557356550424	2.09786763817496	2.00684003085947	3.01458636021732	3.15954225971222	2.10869573011776	0.0888404199991064	0.910976252227424	0.998431161219273
Merged-chr17-51041043-3	chr17	51040950	51041150	+	831.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028162, intron 2 of 21)	intron (NM_028162, intron 2 of 21)	118328.0	NM_001285993	72238.0	Mm.120650	NM_028162	ENSMUSG00000023923	Tbc1d5	1600014N05Rik	TBC1 domain family, member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-5255742-3	chr6	5255637	5255837	+	795.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173006, intron 1 of 8)	intron (NM_173006, intron 1 of 8)	496.0	NM_173006	269823.0	Mm.9122	NM_173006	ENSMUSG00000029759	Pon3	2810004E20|AI786302	paraoxonase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-40882200-3	chr17	40882074	40882274	+	826.888855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1616.0	NM_027834	71583.0	Mm.158733	NM_027834	ENSMUSG00000054951	9130008F23Rik	-	RIKEN cDNA 9130008F23 gene	protein-coding	4.67332386526299	4.45164480242051	3.91884670636832	4.20108557658756	3.27377514322764	3.77827489608725	3.47119631806735	1.71346373763062	-1.55212173504456	0.00594110621143609	0.0761553336803528
Merged-chr17-64333033-3	chr17	64332910	64333110	+	598.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1127.0	NM_001025309	224938.0	Mm.489681	NM_144859	ENSMUSG00000024083	Pja2	AI447901|AL022700|Neurodap1|mKIAA0438	praja ring finger ubiquitin ligase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41999217-3	chr19	41998958	41999158	+	813.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145500, intron 1 of 2)	intron (NM_145500, intron 1 of 2)	17295.0	NM_145500	226122.0	Mm.22948	NM_145500	ENSMUSG00000025171	Ubtd1	BC016129	ubiquitin domain containing 1	protein-coding	0.0516762589088116	-0.182317704816936	-0.186363227020074	-0.0374369367619799	-0.0590051028183349	-0.181402864443142	-0.0179043013582091	0.405438282793787	1.36185861807422	0.525980566082332	1
Merged-chr9-96384235-3	chr9	96384135	96384335	+	869.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-19804.0	NM_001357212	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	1.65376953833363	0.947263241993502	0.925076346332176	0.90740412891889	1.27063300713825	2.23061647198778	1.94652586719842	2.23306662962076	2.6620687833394	0.0382020606819311	0.278236538281147
Merged-chr3-37313624-4	chr3	37313537	37313737	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001255992, intron 1 of 1)	L2|LINE|L2	1083.0	NM_001008502	241950.0	Mm.32171	NM_001008502	ENSMUSG00000051444	Bbs12	Gm1805|Gm407|Gm721	Bardet-Biedl syndrome 12 (human)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-92853779-3	chr16	92853670	92853870	+	846.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27696.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-119399223-2	chr12	119399124	119399324	+	812.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44186.0	NM_001163136	238455.0	Mm.31376	NM_001163136	ENSMUSG00000041886	Macc1	4732474O15Rik|Gm267	metastasis associated in colon cancer 1	protein-coding	-2.05752322593321	-2.15521190974092	-2.16307242109104	-2.16952927915413	-2.17938029103484	-2.15350850414045	-2.16129297361887	-2.16837350464794	-0.683654500252594	0.846597994014493	1
Merged-chr5-146842087-2	chr5	146841987	146842187	+	560.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TC)n|Simple_repeat|Simple_repeat	-2984.0	NM_026864	68895.0	Mm.266978	NM_026864	ENSMUSG00000029641	Rasl11a	1110065D03Rik|AI852031	RAS-like, family 11, member A	protein-coding	-1.56355737717652	-1.81244775989375	-1.82128546162293	-1.82854501295842	-1.83962066705452	-1.81053259306168	-1.81928479966835	-1.82724555674025	-1.28500227969968	0.715751224811686	1
Merged-chr19-36375459-6	chr19	36375340	36375540	+	983.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3627.0	NM_029508	76073.0	Mm.259180	NM_029508	ENSMUSG00000024805	Pcgf5	0610009F02Rik|1110054A01Rik|5830406C17Rik|5830443C21Rik|9530023M17Rik|AI324127	polycomb group ring finger 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28377542-4	chr7	28377420	28377620	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011756, exon 2 of 2)	3' UTR (NM_011756, exon 2 of 2)	1708.0	NM_011756	22695.0	Mm.389856	NM_011756	ENSMUSG00000044786	Zfp36	Gos24|Nup475|TIS11D|TISII|Tis11|Ttp|Zfp-36	zinc finger protein 36	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-148483457-4	chr5	148483359	148483559	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	68214.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-34453319-2	chr6	34453219	34453419	+	605.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23037.0	NM_007563	12183.0	Mm.282863	NM_007563	ENSMUSG00000038871	Bpgm	AI323730|AL022789|C86192	2,3-bisphosphoglycerate mutase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10101850-4	chr19	10101744	10101944	+	800.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019699)	promoter-TSS (NM_019699)	-341.0	NM_019699	56473.0	Mm.38901	NM_019699	ENSMUSG00000024665	Fads2	2900042M13Rik|Fadsd2	fatty acid desaturase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-54696302-2	chr13	54696202	54696402	+	583.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2342.0	NR_027396	105239.0	Mm.25366	NM_134064	ENSMUSG00000034928	Rnf44	AI854545|mKIAA1100	ring finger protein 44	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-57570466-4	chr10	57570408	57570608	+	952.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-37979.0	NM_019760	56442.0	Mm.29344	NM_019760	ENSMUSG00000019877	Serinc1	1500011D18Rik|AI315070|AIGP-2|TMS-2|Tde1l|Tde2|Tms2|mKIAA1253	serine incorporator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65361160-4	chr9	65361035	65361235	+	980.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001111145)	promoter-TSS (NM_001111145)	75.0	NM_001111145	208080.0	Mm.291862	NM_001111145	ENSMUSG00000086228	Ubap1l	Gm514	ubiquitin-associated protein 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167419990-2	chr2	167419890	167420090	+	685.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-1720.0	NM_148929	77031.0	Mm.278924	NM_148929	ENSMUSG00000039463	Slc9a8	1200006P13Rik|6430709P13Rik|AI182282|NHE-8|NHE8	solute carrier family 9 (sodium/hydrogen exchanger), member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-38472969-3	chr2	38472895	38473095	+	943.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38702.0	NM_021606	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-120321017-6	chr13	120320915	120321115	+	827.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2B|LTR|ERVL	4153.0	NM_153523	236219.0	Mm.302175	NM_153523	ENSMUSG00000095821	Tcstv3	-	2-cell-stage, variable group, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-9098423-4	chr13	9098311	9098511	+	874.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172585, intron 1 of 17)	intron (NM_172585, intron 1 of 17)	4530.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-134513830-6	chr1	134513700	134513900	+	947.14447	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19140.0	NM_145510	98710.0	Mm.198119	NM_145510	ENSMUSG00000042229	Rabif	AI842864|AW549708|E130318E12Rik|MSS4|RASGFR3	RAB interacting factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-59009902-3	chr4	59009792	59009992	+	693.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033165, intron 1 of 3)	PB1D7|SINE|Alu	6699.0	NM_001033165	72429.0	Mm.317801	NM_001033165	ENSMUSG00000070972	Dnajc25	2010109C08Rik|2010203O07Rik	DnaJ heat shock protein family (Hsp40) member C25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-118715229-2	chr13	118715129	118715329	+	813.5	f0_balb.idr|f1_balb.idr	5' UTR (NM_008002, exon 1 of 3)	5' UTR (NM_008002, exon 1 of 3)	530.0	NM_008002	14165.0	Mm.317323	NM_008002	ENSMUSG00000021732	Fgf10	AEY17|BB213776|Fgf-10|Gsfaey17	fibroblast growth factor 10	protein-coding	1.6325038088661	2.29216048388921	2.41969500861016	1.08349018446481	1.28322613176032	2.42711223442222	1.11697609179422	2.9342810330971	0.4849832557076	0.668742354080339	0.993344020005271
Merged-chr6-87914043-4	chr6	87913941	87914141	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173737)	promoter-TSS (NM_173737)	65.0	NM_173737	232210.0	Mm.246241	NM_173737	ENSMUSG00000030060	Hmces	8430410A17Rik|C85376	5-hydroxymethylcytosine (hmC) binding, ES cell specific	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-128548897-3	chr1	128548763	128548963	+	849.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB2|LINE|L1	43436.0	NM_009911	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	1.95705294456354	3.10807037929428	3.62614894189888	2.07654955278455	1.81947313459381	2.06826720599027	2.16262758844639	1.22706968217615	-2.13582415873392	0.019802610360645	0.178282930795662
Merged-chr1-59143016-2	chr1	59142916	59143116	+	766.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164682, intron 12 of 22)	B3|SINE|B2	18620.0	NM_145143	227157.0	Mm.474049	NM_145143	ENSMUSG00000079550	Mpp4	Dlg6	membrane protein, palmitoylated 4 (MAGUK p55 subfamily member 4)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43498882-4	chr4	43498800	43499000	+	832.395813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001013377, exon 6 of 12)	exon (NM_001013377, exon 6 of 12)	5535.0	NM_001037913	622404.0	Mm.289109	NM_001037913	ENSMUSG00000028461	Ccdc107	-	coiled-coil domain containing 107	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-52421834-2	chr10	52421734	52421934	+	626.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030250, intron 1 of 4)	intron (NM_030250, intron 1 of 4)	4287.0	NM_030250	52014.0	Mm.199964	NM_030250	ENSMUSG00000023068	Nus1	1600027K07Rik|AU019165|AW538011|BC003223|D10Ertd438e	NUS1 dehydrodolichyl diphosphate synthase subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128771917-2	chr2	128771848	128772048	+	630.799988	f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 9 of 18)	intron (NM_008587, intron 9 of 18)	-46355.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	1.56011803503316	2.67563476714681	0.943027608691818	0.906837917481067	1.37922961630836	3.77568407539842	0.953001789098526	2.59450630221455	1.73026728520991	0.385527311332932	0.876154616828737
Merged-chr5-125274913-2	chr5	125274813	125275013	+	646.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	66181.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-34108917-3	chr2	34108835	34109035	+	905.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1200.0	NR_130173	329387.0	Mm.125817	NR_130173	ENSMUSG00000087461	C230014O12Rik	-	RIKEN cDNA C230014O12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52628740-4	chr13	52628649	52628849	+	935.9249880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011518, intron 7 of 13)	intron (NM_011518, intron 7 of 13)	31867.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-77524535-2	chr14	77524492	77524692	+	910.333374	f0_c57.idr|f1_balb.idr	intron (NM_001253759, intron 7 of 19)	intron (NM_001253759, intron 7 of 19)	-17724.0	NR_033141	629678.0	Mm.390721	NM_001037935	ENSMUSG00000067973	Gm6994	EG629678	predicted gene 6994	ncRNA	1.40876937078681	0.629173944445861	1.47452777617762	0.608538899515633	1.25072823605432	0.63176192788685	1.27460499583678	0.610128206880623	-0.490656883611008	0.7662954159486	0.998431161219273
Merged-chr17-72930680-2	chr17	72930580	72930780	+	767.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029999, intron 2 of 2)	intron (NM_029999, intron 2 of 2)	12375.0	NM_029999	77889.0	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	0.770782615047387	0.378878197767963	1.20200704530879	0.701592753085907	0.352908763506903	1.17787809339751	0.37188330118415	0.364123946461635	-0.847153905027173	0.640945987021889	1
Merged-chr14-101658354-3	chr14	101658275	101658475	+	953.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016723, intron 2 of 8)	intron (NM_016723, intron 2 of 8)	4408.0	NM_016723	50933.0	Mm.275970	NM_016723	ENSMUSG00000022111	Uchl3	-	ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129512275-7	chr4	129512172	129512372	+	997.857117	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1309.0	NM_010807	17357.0	Mm.424974	NM_010807	ENSMUSG00000047945	Marcksl1	AL022768|AW215397|AW536807|D4Bc1|F52|MacMARCKS|Macs2|Macs3|Mlp|Mrp	MARCKS-like 1	protein-coding	3.69052625644371	3.00631224920272	4.59591945628899	1.61811623061178	3.77360905793108	3.03038044200729	3.8377441894687	3.35144485427486	-0.134302466921364	0.850082927992681	0.998431161219273
Merged-chr17-64723400-4	chr17	64723305	64723505	+	962.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008549, intron 16 of 21)	Lx8|LINE|L1	-43706.0	NR_105051	101202683.0	Mm.393309	NR_105051		Dreh	-	down-regulated in hepatocellular carcinoma	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-77304743-4	chr2	77304638	77304838	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24146.0	NM_175465	228071.0	Mm.27120	NM_175465	ENSMUSG00000042272	Sestd1	1500031J16Rik|A930010O20|Solo/Trio8	SEC14 and spectrin domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-57525515-3	chr14	57525376	57525576	+	804.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_145837, exon 2 of 3)	exon (NM_145837, exon 2 of 3)	647.0	NM_145837	239114.0	Mm.390726	NM_145837	ENSMUSG00000050222	Il17d	AI462269|IL-17D	interleukin 17D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-10714774-4	chr15	10714634	10714834	+	924.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166408)	promoter-TSS (NM_001166408)	-102.0	NR_045063	75259.0	Mm.33928	NR_045063	ENSMUSG00000096971	4930556M19Rik	1700009D01Rik|C130022M03Rik	RIKEN cDNA 4930556M19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100770989-3	chr11	100770896	100771096	+	810.616638	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031871)	promoter-TSS (NM_031871)	-39.0	NM_031871	80860.0	Mm.37308	NM_031871	ENSMUSG00000017747	Ghdc	D11Lgp1e	GH3 domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102296604-4	chr12	102296503	102296703	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161365, intron 1 of 9)	intron (NM_001161365, intron 1 of 9)	12962.0	NM_001161365	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	4.20639131095404	2.87939727081291	3.69814211426634	3.67123433879235	4.004822899066	3.76907603458319	5.11771029493707	4.29753060080257	0.940794687057717	0.0654447819055328	0.383152160037044
Merged-chr19-38052898-2	chr19	38052788	38052988	+	668.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2096.0	NM_028293	74107.0	Mm.9916	NM_028293	ENSMUSG00000024989	Cep55	1200008O12Rik|2700032M20Rik	centrosomal protein 55	protein-coding	2.23307511502187	2.86648519625744	1.41777454617443	2.75077585740853	1.67881968746831	1.47547748455977	1.98606888237442	1.1327750578262	-2.08419424804021	0.0429230162421289	0.296902098454132
Merged-chr3-79864974-4	chr3	79864873	79865073	+	968.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20957.0	NM_133187	68659.0	Mm.427274	NM_133187	ENSMUSG00000027955	Fam198b	1110032E23Rik|2210419I08Rik|AV011458|Ened	family with sequence similarity 198, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-8922967-4	chr12	8922874	8923074	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008640, intron 1 of 6)	intron (NM_008640, intron 1 of 6)	1667.0	NM_008640	17775.0	Mm.30071	NM_008640	ENSMUSG00000020585	Laptm4a	AA286466|LAPTM4|MTP|Mtrp|mKIAA0108	lysosomal-associated protein transmembrane 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31394987-4	chr14	31394879	31395079	+	899.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347585, intron 2 of 7)	intron (NM_001347585, intron 2 of 7)	22698.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-31247605-4	chr9	31247496	31247696	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23805.0	NM_001101597	638580.0	Mm.373655	NM_001101597		Gm7244	EG638580	predicted gene 7244	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152761977-4	chr1	152761871	152762071	+	913.3250119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346117, intron 1 of 18)	intron (NM_001346117, intron 1 of 18)	4334.0	NM_001346119	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-37198069-2	chr6	37197969	37198169	+	558.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347104, intron 1 of 32)	intron (NM_001347104, intron 1 of 32)	101907.0	NM_001081206	320127.0	Mm.119469	NM_001081206	ENSMUSG00000038665	Dgki	6430604M11Rik|C130010K08Rik	diacylglycerol kinase, iota	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-26350797-1	chr8	26350697	26350897	+	670.0	f0_balb.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	192628.0	NM_199042	73754.0	Mm.383241	NM_199042	ENSMUSG00000037214	Thap1	4833431A01Rik|AW490810	THAP domain containing, apoptosis associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-32211277-1	chr9	32211177	32211377	+	588.0	f0_balb.idr	intron (NM_001195632, intron 10 of 21)	MTC|LTR|ERVL-MaLR	-12972.0	NM_177379	330914.0	Mm.46683	NM_177379	ENSMUSG00000041444	Arhgap32	3426406O18Rik|Gc-gap|Grit|Px-rics|Rics|mKIAA0712|p200Rhogap|p250Gap	Rho GTPase activating protein 32	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-135177478-4	chr6	135177315	135177515	+	796.408325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1G|LTR|ERVL-MaLR	-9200.0	NM_013546	15199.0	Mm.378937	NM_013546	ENSMUSG00000042770	Hebp1	Hebp|p22HBP	heme binding protein 1	protein-coding	0.617294160220187	0.523104328531535	0.185585446772991	0.681789547583664	0.3117268325094	0.192111495109569	0.186757653932314	0.470078684635641	-1.72507618085497	0.367390423603604	1
Merged-chr16-95716069-2	chr16	95715969	95716169	+	618.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_011809, exon 8 of 10)	exon (NM_011809, exon 8 of 10)	13662.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-74819861-4	chr17	74819908	74820108	+	905.9541630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152817, intron 13 of 19)	RMER19C|LTR|ERVK	102258.0	NM_152817	74196.0	Mm.209503	NM_152817	ENSMUSG00000024078	Ttc27	2610511O17Rik	tetratricopeptide repeat domain 27	protein-coding	0.789361624542071	0.0701613379353609	1.19040003868902	0.0555597357216092	0.222212879728983	0.0719946908375267	0.06377991678581	0.0566831545717765	-3.53718161940712	0.091486355929018	1
Merged-chr17-8163531-3	chr17	8163424	8163624	+	977.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1994.0	NM_001197046	75296.0	Mm.227250	NM_201230	ENSMUSG00000069135	Fgfr1op	4930553O10Rik|FOP	Fgfr1 oncogene partner	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166908236-2	chr2	166908136	166908336	+	869.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023565, intron 1 of 24)	B2_Mm1t|SINE|B2	2140.0	NM_023565	110750.0	Mm.22417	NM_023565	ENSMUSG00000002718	Cse1l	2610100P18Rik|AA407533|Capts|Cas|Xpo2	chromosome segregation 1-like (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-146192168-3	chr6	146192100	146192300	+	896.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019923, intron 46 of 56)	intron (NM_019923, intron 46 of 56)	258078.0	NM_010656	16651.0	Mm.49689	NM_010656	ENSMUSG00000030255	Sspn	Krag	sarcospan	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-55529395-2	chr13	55529295	55529495	+	888.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013739)	promoter-TSS (NM_013739)	-857.0	NM_013739	27261.0	Mm.33910	NM_013739	ENSMUSG00000035711	Dok3	AI450713|Dokl	docking protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-9430077-4	chr15	9429974	9430174	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5954.0	NM_029341	75568.0	Mm.82143	NM_029341	ENSMUSG00000039676	Capsl	1700028N11Rik|AW125205	calcyphosine-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-61216512-2	chr18	61216411	61216611	+	679.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3988.0	NM_146086	225600.0	Mm.391106	NM_146086	ENSMUSG00000024575	Pde6a	Pdea|nmf282	phosphodiesterase 6A, cGMP-specific, rod, alpha	protein-coding	-0.289851946104314	-0.737899168765768	-0.740932179010924	-0.743264539078787	-0.280173431323445	-0.737213951634147	-0.740264187498491	-0.742857569821679	0.0418983010157508	0.98887086484455	1
Merged-chr4-116710002-2	chr4	116709902	116710102	+	673.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_151452, intron 4 of 9)	intron (NR_151452, intron 4 of 9)	1407.0	NR_151451	68394.0	Mm.425201	NM_026714	ENSMUSG00000028689	Ccdc163	0610037D15Rik|4933430J04Rik	coiled-coil domain containing 163	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-91509737-3	chr13	91509632	91509832	+	768.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360776, intron 1 of 15)	intron (NM_001360776, intron 1 of 15)	48635.0	NM_024186	66970.0	Mm.343095	NM_024186	ENSMUSG00000003992	Ssbp2	1500004K09Rik|2310079I02Rik|9330163K02Rik|A830008M03Rik|AU067692|AW558684|Hspc116|SSDP2	single-stranded DNA binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-109968004-4	chr7	109967907	109968107	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7537.0	NM_001311139	19347.0	Mm.21904	NM_021494	ENSMUSG00000035901	Dennd5a	1500012B19Rik|AJ245569|AW496491|ORF37|Rab6ip1|mKIAA1091	DENN/MADD domain containing 5A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119944807-4	chr11	119944682	119944882	+	948.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037754, intron 1 of 13)	intron (NM_001037754, intron 1 of 13)	1690.0	NM_130862	108100.0	Mm.197534	NM_130862	ENSMUSG00000025372	Baiap2	IRSp53|R75030	brain-specific angiogenesis inhibitor 1-associated protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-33778772-4	chr8	33778689	33778889	+	857.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31019.0	NM_001206849	72632.0	Mm.443483	NM_001206849	ENSMUSG00000094500	Smim18	2700090O03Rik|AI835723	small integral membrane protein 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-6983043-4	chr10	6982955	6983155	+	911.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039652, intron 4 of 5)	intron (NM_001039652, intron 4 of 5)	-2590.0	NM_001170801	320495.0	Mm.331674	NM_001033391	ENSMUSG00000064065	Ipcef1	A130090K04Rik	interaction protein for cytohesin exchange factors 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-146146309-2	chr3	146146209	146146409	+	615.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3524.0	NM_026656	68279.0	Mm.116862	NM_026656	ENSMUSG00000011008	Mcoln2	3300002C04Rik|AI549968|C86638|TRPML2	mucolipin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-12224604-4	chr18	12224519	12224719	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008720, intron 1 of 24)	intron (NM_008720, intron 1 of 24)	11767.0	NM_008720	18145.0	Mm.3484	NM_008720	ENSMUSG00000024413	Npc1	A430089E03Rik|C85354|D18Ertd139e|D18Ertd723e|lcsd|nmf164|spm	NPC intracellular cholesterol transporter 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-97536004-4	chr16	97535919	97536119	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_003508)	promoter-TSS (NR_003508)	-62.0	NR_003508	17858.0	Mm.14157	NM_013606	ENSMUSG00000023341	Mx2	AI528743|Mx-2	MX dynamin-like GTPase 2	protein-coding	4.88094228273828	5.7112042752288	5.28194992279987	5.39054254349193	5.60833735126247	4.751114158996	5.96213663973342	5.98797929101191	0.368377674818688	0.252395993988203	0.750061212649553
Merged-chr15-9070453-4	chr15	9070391	9070591	+	936.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286255)	promoter-TSS (NM_001286255)	-769.0	NM_001286255	68646.0	Mm.244226	NM_001040395	ENSMUSG00000022253	Nadk2	MNADK|Nadkd1	NAD kinase 2, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-64279727-4	chr7	64279601	64279801	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA4A|LINE|L1	-7969.0	NM_172742	233315.0	Mm.214959	NM_172742	ENSMUSG00000030522	Mtmr10	BB128963|C79734	myotubularin related protein 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-85832282-4	chr15	85832178	85832378	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033337)	promoter-TSS (NM_001033337)	-26.0	NM_001033337	239570.0	Mm.151748	NM_001033337	ENSMUSG00000035944	Ttc38	9030019H09	tetratricopeptide repeat domain 38	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132303348-4	chr4	132303273	132303473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081651)	promoter-TSS (NM_001081651)	-17.0	NM_001081651	242681.0	Mm.331927	NM_001081651	ENSMUSG00000089687	Rab42	9530096D07Rik|Rab42-ps	RAB42, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-118704070-2	chr2	118703970	118704170	+	633.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081971)	promoter-TSS (NM_001081971)	-107.0	NM_001081971	383787.0	Mm.35758	NM_001081971	ENSMUSG00000078137	Ankrd63	Gm1337	ankyrin repeat domain 63	protein-coding	-2.18138529563533	-2.15523716995652	-2.1631445789866	-2.16963996020037	-2.05513010215571	-2.15352360143315	-2.16135451490766	-2.16847729006863	0.759018020146679	0.829933115115583	1
Merged-chr15-58616197-3	chr15	58616091	58616291	+	924.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	200723.0	NM_145959	210998.0	Mm.3224	NM_145959	ENSMUSG00000037119	Fam91a1	AV220772|BC033609|D15Ertd621e|SKIN|mKIAA0493	family with sequence similarity 91, member A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-103816796-4	chr14	103816702	103816902	+	999.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007904, exon 7 of 7)	3' UTR (NM_007904, exon 7 of 7)	26899.0	NM_007904	13618.0	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-106678396-4	chr1	106678272	106678472	+	967.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009741, intron 1 of 1)	L1MB3|LINE|L1	35918.0	NM_009741	12043.0	Mm.257460	NM_009741	ENSMUSG00000057329	Bcl2	AW986256|Bcl-2|C430015F12Rik|D630044D05Rik|D830018M01Rik	B cell leukemia/lymphoma 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-6723822-4	chr2	6723729	6723929	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110232, intron 3 of 15)	intron (NM_001110232, intron 3 of 15)	-2167.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-45443831-2	chr4	45443712	45443912	+	672.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033306, intron 5 of 5)	intron (NM_001033306, intron 5 of 5)	-35046.0	NM_001009949	230125.0	Mm.260210	NM_001009949	ENSMUSG00000045973	Slc25a51	9130208E07Rik|D130005A03Rik|Gm138|Mcart1	solute carrier family 25, member 51	protein-coding	0.77870435388272	1.61565478276977	2.1412935360815	1.02653143167488	0.782554574468446	1.87834913970479	1.0626095817422	1.37316747985036	-0.534043098410693	0.691727208535786	0.997197578662171
Merged-chr7-44468678-2	chr7	44468578	44468778	+	650.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_026690)	TTS (NM_026690)	698.0	NM_001205070	66124.0	Mm.358691	NM_025368	ENSMUSG00000038695	Josd2	1110007C05Rik	Josephin domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-13889344-2	chr8	13889244	13889444	+	859.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359059, intron 1 of 2)	intron (NM_001359059, intron 1 of 2)	927.0	NM_001359059	66423.0	Mm.29063	NM_025556	ENSMUSG00000031458	Coprs	1700029I03Rik|2410022L05Rik|AA409325|AI256813|C85432|Copr5	coordinator of PRMT5, differentiation stimulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-40884258-2	chr10	40884158	40884358	+	852.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_031877, intron 1 of 8)	CpG	724.0	NM_031877	83767.0	Mm.41353	NM_031877	ENSMUSG00000019831	Wasf1	AI195380|AI838537|Scar|WAVE|WAVE-1	WAS protein family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-78375285-2	chr16	78375185	78375385	+	820.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001297747, intron 1 of 4)	intron (NM_001297747, intron 1 of 4)	1472.0	NR_002700	654432.0	Mm.458574	NR_002700	ENSMUSG00000044645	Gm7334	EG654432	B-cell translocation gene 3 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83124359-2	chr6	83124259	83124459	+	675.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_023547, exon 3 of 5)	exon (NM_023547, exon 3 of 5)	670.0	NM_023547	70020.0	Mm.27814	NM_023547	ENSMUSG00000030034	Ino80b	2510009I23Rik|HMG1YL4|Hmga1l4|Papa1|Znhit4	INO80 complex subunit B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128776645-4	chr2	128776506	128776706	+	890.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 10 of 18)	intron (NM_008587, intron 10 of 18)	-41697.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	2.4893244104349	3.15799478680282	2.3627304437006	1.33375087564704	2.05483086970521	3.0181999998401	1.65548267389161	3.05035789374153	0.180759273487448	0.844459094899673	0.998431161219273
Merged-chr19-14669097-2	chr19	14668997	14669197	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70914.0	NM_001302947	21888.0	Mm.103638	NM_011600	ENSMUSG00000024642	Tle4	5730411M05Rik|AA792082|Bce-1|Bce1|ESTM13|ESTM14|Grg4|X83332|X83333|grg-4	transducin-like enhancer of split 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-20983661-2	chr11	20983561	20983761	+	641.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-107663.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-8759288-2	chr19	8759188	8759388	+	542.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016813, intron 1 of 20)	intron (NM_016813, intron 1 of 20)	2171.0	NM_001276704	53319.0	Mm.7271	NM_016813	ENSMUSG00000010097	Nxf1	Mex67|Mvb1|Tap	nuclear RNA export factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72439128-4	chr6	72439025	72439225	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_046011, exon 1 of 1)	non-coding (NR_046011, exon 1 of 1)	433.0	NM_145569	232087.0	Mm.29815	NM_145569	ENSMUSG00000053907	Mat2a	D630045P18Rik	methionine adenosyltransferase II, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-20644053-3	chr9	20643950	20644150	+	887.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310746)	promoter-TSS (NM_001310746)	714.0	NM_025401	66177.0	Mm.390165	NM_025401	ENSMUSG00000084786	Ubl5	1110030M22Rik|beacon	ubiquitin-like 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-90223246-2	chr7	90223146	90223346	+	668.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_183293)	TTS (NM_183293)	42186.0	NM_029256	75338.0	Mm.487222	NM_029256	ENSMUSG00000030617	Ccdc83	4930549K11Rik|4930554C01Rik|4932423M01Rik	coiled-coil domain containing 83	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21137072-2	chr9	21136972	21137172	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	-5797.0	NM_001205312	54721.0	Mm.20249	NM_018793	ENSMUSG00000032175	Tyk2	JTK1	tyrosine kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-130789017-2	chr4	130788917	130789117	+	795.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3520.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-121395652-4	chr10	121395558	121395758	+	701.166687	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_029364, exon 14 of 14)	3' UTR (NM_029364, exon 14 of 14)	30568.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	2.26649739941711	2.691985556859	2.15828722196575	2.39585901174944	1.82264786655271	3.69020597963627	2.61912149415697	3.16588285947076	1.16182864551719	0.14048358152856	0.585252964543454
Merged-chr17-5569287-4	chr17	5569192	5569392	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	76692.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-87073446-3	chr11	87073315	87073515	+	898.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025638, intron 1 of 9)	intron (NM_025638, intron 1 of 9)	722.0	NM_025638	66569.0	Mm.281887	NM_025638	ENSMUSG00000061666	Gdpd1	2610020H15Rik	glycerophosphodiester phosphodiesterase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-16467879-2	chr5	16467790	16467990	+	596.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-85605.0	NM_001289460	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-90323108-4	chr16	90322998	90323198	+	987.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38595.0	NM_178923	224432.0	Mm.439811	NM_178923	ENSMUSG00000022983	Scaf4	AA517739|Sfrs15|Sra4|Srsf15	SR-related CTD-associated factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67689659-5	chr10	67689551	67689751	+	865.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-117692.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-31348631-2	chr15	31348531	31348731	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027496, intron 1 of 3)	intron (NM_027496, intron 1 of 3)	19128.0	NM_001357923	67434.0	Mm.102470	NM_026153	ENSMUSG00000022237	Ankrd33b	0610012A05Rik|3021401C12Rik|5730557B15Rik	ankyrin repeat domain 33B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55103096-2	chr14	55102996	55103196	+	772.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007455, intron 10 of 21)	intron (NM_007455, intron 10 of 21)	3497.0	NM_001303502	11766.0	Mm.238879	NM_007455	ENSMUSG00000040701	Ap1g2	Adtg2|G2ad	adaptor protein complex AP-1, gamma 2 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97792034-2	chr11	97791934	97792134	+	599.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7531.0	NM_010688	16796.0	Mm.271967	NM_010688	ENSMUSG00000038366	Lasp1	AA408629|Def-4|LASP-1|MLN 50|SH3P6|Tg(Col1a1-lacZ)1Ngma	LIM and SH3 protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-60644799-4	chr13	60644691	60644891	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	ORR1E|LTR|ERVL-MaLR	42580.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	4.76260082710565	4.78054782775485	5.61233722568405	4.68896192650881	4.95425228531354	4.76297660466414	4.56420036241454	4.20479206718536	-0.443675898240349	0.231845642641113	0.72653641243802
Merged-chr11-115939816-2	chr11	115939716	115939916	+	952.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_020483, intron 3 of 10)	intron (NM_020483, intron 3 of 10)	6157.0	NM_020483	57230.0	Mm.267810	NM_020483	ENSMUSG00000020755	Sap30bp	2700016D05Rik|Hcngp	SAP30 binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-50025030-4	chr11	50024941	50025141	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290749)	promoter-TSS (NM_001290749)	-290.0	NM_021540	59044.0	Mm.359004	NM_021540	ENSMUSG00000020376	Rnf130	2510042A13Rik|G1RZFP|G1rp|GOLIATH|GP	ring finger protein 130	protein-coding	2.79252411306873	1.9602483156483	3.04928485981015	1.81845250658421	4.27438445188776	3.39371240531313	3.9191263238664	3.68953653262405	2.18763860052976	0.000782010165194842	0.015866783475774
Merged-chr19-41349840-2	chr19	41349740	41349940	+	775.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 2 of 16)	intron (NM_031376, intron 2 of 16)	35230.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-18845166-2	chr10	18845066	18845266	+	760.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022032)	promoter-TSS (NM_022032)	95.0	NM_022032	64058.0	Mm.28209	NM_022032	ENSMUSG00000019851	Perp	1110017A08Rik|KCP1|KRTCAP1|PIGPC1|THW	PERP, TP53 apoptosis effector	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-184617606-2	chr1	184617506	184617706	+	686.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59915.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	0.112275051929145	0.136154537265069	1.05802401277972	0.915895094213539	0.422181509461133	0.137889376237165	0.130126674091937	0.123442723549567	-2.79038951244656	0.189390047858291	1
Merged-chr2-59851860-2	chr2	59851760	59851960	+	809.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_028118)	TTS (NM_028118)	30746.0	NM_001159636	72137.0	Mm.288734	NM_028118	ENSMUSG00000026988	Wdsub1	1700048E19Rik|2610014F08Rik	WD repeat, SAM and U-box domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99457847-4	chr15	99457739	99457939	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001001884)	promoter-TSS (NM_001001884)	-91.0	NM_001001884	380969.0	Mm.22915	NM_001001884	ENSMUSG00000023009	Nckap5l	C230021P08Rik|Cep169	NCK-associated protein 5-like	protein-coding	5.76283395321038	6.07467004851521	6.0118127536827	5.57543148793617	5.69155859670245	5.66774494151859	4.06145426308455	5.03910808224021	-0.690167390719814	0.0380887324109744	0.277523448259233
Merged-chr13-20508291-2	chr13	20508186	20508386	+	704.583374	f0_balb.idr|f1_balb.idr	intron (NM_198093, intron 1 of 6)	intron (NM_198093, intron 1 of 6)	35296.0	NM_198093	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	0.260613880184293	0.289241840591604	1.23299945545998	0.272775093396894	1.09277129790848	0.860548940738493	0.282044940671405	0.274041943162115	0.363661933309423	0.854498944290025	1
Merged-chr9-62235814-2	chr9	62235714	62235914	+	663.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8286.0	NR_040769	330958.0	Mm.411888	NR_040769	ENSMUSG00000111232	A730043L09Rik	A730043L09	RIKEN cDNA A730043L09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-128548418-3	chr1	128548298	128548498	+	967.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43901.0	NM_009911	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	4.77706169105573	4.44520397682136	5.25722076822148	4.9393051145785	3.23191966098001	3.76416413689346	3.53544827373873	1.73718157663789	-2.19762186664291	1.47541157635745e-05	0.000636762161623624
Merged-chr5-134583704-2	chr5	134583604	134583804	+	580.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_020022, intron 1 of 10)	PB1D9|SINE|Alu	1014.0	NM_020022	19718.0	Mm.332739	NM_020022	ENSMUSG00000023104	Rfc2	2610008M13Rik|40kDa|AI326953|Recc2	replication factor C (activator 1) 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28410217-2	chr7	28410117	28410317	+	636.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175021, intron 3 of 12)	intron (NM_175021, intron 3 of 12)	17221.0	NM_019458	54624.0	Mm.7916	NM_019458	ENSMUSG00000003437	Paf1	5730511K23Rik|AA675045	Paf1, RNA polymerase II complex component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-70476566-4	chr18	70476472	70476672	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289650, intron 5 of 8)	intron (NM_001289650, intron 5 of 8)	3906.0	NM_001289650	170461.0	Mm.83623	NM_029019	ENSMUSG00000079608	Stard6	1700011K09Rik|4833424I06Rik|4933429L05Rik|AI644424	StAR-related lipid transfer (START) domain containing 6	protein-coding	4.22483122292178	5.41426184751055	4.46214349627319	4.10397738807875	4.40034737867889	5.53522225325814	5.3247321404908	4.24913340197159	0.403939997784413	0.3526009524195	0.852580859961539
Merged-chr12-99390914-4	chr12	99390812	99391012	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183186, intron 1 of 5)	intron (NM_183186, intron 1 of 5)	59162.0	NM_183186	71375.0	Mm.341972	NM_183186	ENSMUSG00000033713	Foxn3	5430426H20Rik|AA589593|AW556347|Ches1|Ches1l|HTLFL1	forkhead box N3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-31435381-2	chr3	31435281	31435481	+	552.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-125062.0	NM_172861	241919.0	Mm.285366	NM_172861	ENSMUSG00000069072	Slc7a14	A930013N06|BC061928	solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-4203996-4	chr7	4203918	4204118	+	951.741699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33736.0	NM_001081239	232801.0	Mm.258061	NM_001081239	ENSMUSG00000070873	Lilra5	E030017K20|EG232801|Gm4878|Lilrc1	leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-92413185-3	chr16	92413088	92413288	+	759.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081549, intron 1 of 3)	intron (NM_001081549, intron 1 of 3)	-13110.0	NM_019466	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70931110-3	chr14	70931035	70931235	+	993.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302094, intron 3 of 7)	intron (NM_001302094, intron 3 of 7)	41028.0	NM_001302094	14586.0	Mm.32619	NM_008115	ENSMUSG00000022103	Gfra2	-	glial cell line derived neurotrophic factor family receptor alpha 2	protein-coding	0.999387545065491	1.07454745423054	2.48132520484791	1.87194394318206	1.38902730566107	2.02040611354269	2.06225310466354	1.61859001361701	0.0629105710571179	0.957444528885067	0.998431161219273
Merged-chr1-91539927-2	chr1	91539834	91540034	+	929.8333130000001	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039126)	promoter-TSS (NM_001039126)	-631.0	NM_001039126	65247.0	Mm.234152	NM_023046	ENSMUSG00000026311	Asb1	1700029O08Rik|1700054C17Rik|AI426616|AI851378|mKIAA1146	ankyrin repeat and SOCS box-containing 1	protein-coding	1.38379094801446	1.4948559949484	0.669738786104966	0.852897470535359	1.20646092531021	1.50889035365992	0.672456369087098	0.661838713126643	-0.324547418831104	0.831900314555201	0.998431161219273
Merged-chr4-141637737-3	chr4	141637673	141637873	+	964.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033150, intron 6 of 19)	intron (NM_001033150, intron 6 of 19)	-13939.0	NM_001013780	384071.0	Mm.295682	NM_001013780	ENSMUSG00000040740	Slc25a34	Gm1369	solute carrier family 25, member 34	protein-coding	1.31302017903801	2.7150602791346	1.4333637416919	3.03648273879495	2.73050730370632	2.86146401904394	3.37849272509162	3.67185687567467	1.56756951307031	0.0673339082409382	0.389648986048927
Merged-chr14-50944534-4	chr14	50944422	50944622	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_013632, exon 1 of 6)	5' UTR (NM_013632, exon 1 of 6)	219.0	NM_013632	18950.0	Mm.17932	NM_013632	ENSMUSG00000115338	Pnp	AL024301|AU015798|Np|Np-1|Np-2|Pnp1	purine-nucleoside phosphorylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-101595399-4	chr3	101595319	101595519	+	912.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144900, intron 1 of 22)	intron (NM_144900, intron 1 of 22)	9288.0	NM_144900	11928.0	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-43637300-4	chr7	43637163	43637363	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028236, intron 2 of 5)	intron (NM_028236, intron 2 of 5)	2524.0	NM_028236	72431.0	Mm.158821	NM_028236	ENSMUSG00000030472	Ceacam18	2010110O04Rik	carcinoembryonic antigen-related cell adhesion molecule 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-144007688-2	chr2	144007588	144007788	+	770.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133626, intron 1 of 2)	intron (NM_133626, intron 1 of 2)	3575.0	NM_133626	81910.0	Mm.13705	NM_024281	ENSMUSG00000027422	Rrbp1	1700087N07Rik|5730465C04Rik|ES/130|mKIAA1398|mRRp0|mRRp1.8|mRRp10|mRRp15a|mRRp15b|mRRp16.8|mRRp2|mRRp41|mRRp47|mRRp5.4|p180	ribosome binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-107338449-2	chr11	107338349	107338549	+	719.333374	f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 1 of 9)	intron (NR_153311, intron 1 of 9)	132271.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69800789-2	chr11	69800689	69800889	+	650.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_010198, intron 1 of 5)	intron (NM_010198, intron 1 of 5)	927.0	NM_001291104	14166.0	Mm.269011	NM_010198	ENSMUSG00000042826	Fgf11	Fgf-11|Fhf-3|Fhf3	fibroblast growth factor 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-90442286-4	chr7	90442130	90442330	+	831.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145151)	promoter-TSS (NM_145151)	-551.0	NR_073436	233490.0	Mm.29496	NM_145151	ENSMUSG00000051451	Crebzf	1110034C16Rik|6330417B10Rik|LAZip|LAZipII|SMILE|Zf	CREB/ATF bZIP transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-7817956-4	chr14	7817866	7818066	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134080)	promoter-TSS (NM_134080)	9.0	NM_134080	286940.0	Mm.489652	NM_134080	ENSMUSG00000025278	Flnb	AL024016|Fln-b	filamin, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-61920594-4	chr8	61920475	61920675	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7512.0	NM_001293783	234311.0	Mm.275233	NM_144928	ENSMUSG00000037921	Ddx60	9830118M07	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-55593279-2	chr4	55593179	55593379	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60804.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	2.48238907328537	2.21342814992353	1.49019061730066	1.80958478162284	1.98490723284291	2.73501122843946	1.87513200264135	1.46126231104133	0.109822181410753	0.91055683363695	0.998431161219273
Merged-chr2-60815031-4	chr2	60814938	60815138	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001141932, intron 2 of 14)	intron (NM_001141932, intron 2 of 14)	66400.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97988177-4	chr11	97988083	97988283	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1737.0	NM_001163608	72324.0	Mm.39617	NM_028199	ENSMUSG00000017417	Plxdc1	2410003I07Rik|AI848450|Tem7	plexin domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-114665879-3	chr4	114665766	114665966	+	711.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-155854.0	NR_033617	433746.0	Mm.388908	NR_033617	ENSMUSG00000055198	Gm12830	-	predicted gene 12830	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-37251190-1	chr12	37251090	37251290	+	690.5	f0_balb.idr	intron (NM_178767, intron 2 of 12)	intron (NM_178767, intron 2 of 12)	9551.0	NM_178767	319660.0	Mm.485540	NM_178767	ENSMUSG00000050103	Agmo	A530016O06Rik|AI790538|Tmem195	alkylglycerol monooxygenase	protein-coding	1.89604891101512	1.36987992149544	1.09538843268191	1.0771072133076	2.00546569791382	2.04259686063388	2.08337929455004	2.28660479752895	2.10933614388068	0.0616550992075056	0.368762652189258
Merged-chr9-108346942-2	chr9	108346842	108347042	+	797.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311157)	promoter-TSS (NM_001311157)	-889.0	NM_001311157	22258.0	Mm.3974	NM_011678	ENSMUSG00000032612	Usp4	F730026I20Rik|Unp|mKIAA4155	ubiquitin specific peptidase 4 (proto-oncogene)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34693297-3	chr17	34693221	34693421	+	863.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031176, intron 12 of 32)	intron (NM_031176, intron 12 of 32)	22786.0	NM_031176	81877.0	Mm.290527	NM_031176	ENSMUSG00000033327	Tnxb	Tn-mhc|Tnx	tenascin XB	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-11713646-4	chr2	11713546	11713746	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271499, intron 1 of 6)	RLTR17|LTR|ERVK	7934.0	NM_001271500	16169.0	Mm.200196	NM_008358	ENSMUSG00000023206	Il15ra	AA690181|IL-15RA	interleukin 15 receptor, alpha chain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-123250831-2	chr8	123250688	123250888	+	733.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001310661, exon 4 of 15)	exon (NM_001310661, exon 4 of 15)	-3407.0	NM_020497	57247.0	Mm.379084	NM_020497	ENSMUSG00000001065	Zfp276	AW048709|D8Ertd370e|D8Ertd377e|Znf276	zinc finger protein (C2H2 type) 276	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-144173976-1	chr2	144173876	144174076	+	619.0	f0_balb.idr	non-coding (NR_136884, exon 4 of 4)	non-coding (NR_136884, exon 4 of 4)	15314.0	NR_136884	433481.0	Mm.330630	NR_136884	ENSMUSG00000074758	Gm5535	EG433481	predicted gene 5535	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69408746-4	chr11	69408652	69408852	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001017426, exon 2 of 23)	5' UTR (NM_001017426, exon 2 of 23)	4923.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-45975866-4	chr8	45975774	45975974	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033148)	promoter-TSS (NM_001033148)	346.0	NM_138668	192169.0	Mm.210882	NM_138668	ENSMUSG00000031634	Ufsp2	1810047C23Rik	UFM1-specific peptidase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-32252559-2	chr4	32252467	32252667	+	540.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-164868.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-101800595-3	chr3	101800507	101800707	+	806.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35616.0	NM_172295	242125.0	Mm.32900	NM_172295	ENSMUSG00000044313	Mab21l3	-	mab-21-like 3 (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-59044967-4	chr4	59044878	59045078	+	911.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA4|LINE|L1	9822.0	NM_025277	14700.0	Mm.41780	NM_025277	ENSMUSG00000038607	Gng10	AV006524	guanine nucleotide binding protein (G protein), gamma 10	protein-coding	3.22659112800155	3.76067133137028	2.62019083707476	2.8182320226395	3.32573117311186	3.55435848952136	3.43928562034754	3.80540314748552	0.578817510372882	0.320835504676836	0.823346905075712
Merged-chr14-47071923-1	chr14	47071823	47072023	+	795.0	f1_balb.idr	intron (NM_001310544, intron 1 of 7)	intron (NM_001310544, intron 1 of 7)	2946.0	NM_001310544	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	0.101632577870057	-0.505822836530554	-0.509349588363421	-0.512062165165824	-0.375097178891348	-0.505026167836991	-0.186943564419151	-0.511588815593458	-0.698993488282653	0.79041918132016	1
Merged-chr6-31427462-4	chr6	31427362	31427562	+	995.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013791, intron 3 of 17)	intron (NM_013791, intron 3 of 17)	28634.0	NM_013791	27418.0	Mm.238038	NM_013791	ENSMUSG00000025609	Mkln1	A130067F06Rik|AU015903|BB154892	muskelin 1, intracellular mediator containing kelch motifs	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-42254049-4	chr13	42253953	42254153	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47423.0	NM_010104	13614.0	Mm.14543	NM_010104	ENSMUSG00000021367	Edn1	ET-1|PPET1|preproET	endothelin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3808602-2	chr4	3808502	3808702	+	864.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	27053.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-106794102-2	chr1	106794002	106794202	+	570.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009190, intron 1 of 10)	intron (NM_009190, intron 1 of 10)	2623.0	NM_009190	20479.0	Mm.18705	NM_009190	ENSMUSG00000009907	Vps4b	8030489C12Rik|Skd1	vacuolar protein sorting 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-31632102-2	chr18	31632002	31632202	+	750.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2266.0	NM_001357554	269003.0	Mm.194538	NM_172965	ENSMUSG00000024260	Sap130	2610304F09Rik|6720406D06	Sin3A associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128695831-3	chr10	128695741	128695941	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177411, intron 1 of 5)	intron (NM_177411, intron 1 of 5)	427.0	NM_177411	19344.0	Mm.12815	NM_011229	ENSMUSG00000000711	Rab5b	C030027M18Rik	RAB5B, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-126256473-4	chr4	126256375	126256575	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144941)	promoter-TSS (NM_144941)	-156.0	NM_001145970	245877.0	Mm.266716	NM_144941	ENSMUSG00000028849	Map7d1	AV028413|BC019977|Mtap7d1|Parcc1|Rprc1|mKIAA1187	MAP7 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-10374128-3	chr2	10374014	10374214	+	812.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177386, intron 1 of 22)	CpG	1678.0	NM_177386	353282.0	Mm.329991	NM_177386	ENSMUSG00000061186	Sfmbt2	D2Wsu23e|D330030P06Rik	Scm-like with four mbt domains 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-150594599-4	chr5	150594515	150594715	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133898)	promoter-TSS (NM_133898)	-90.0	NM_133898	100637.0	Mm.279932	NM_133898	ENSMUSG00000041132	N4bp2l1	2410024N18Rik|AI428195|B230342M21Rik	NEDD4 binding protein 2-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-15590901-4	chr3	15590798	15590998	+	865.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15833.0	NM_001173460	668101.0	Mm.423523	NM_001173460	ENSMUSG00000095028	Sirpb1b	-	signal-regulatory protein beta 1B	protein-coding	3.67363537562915	3.01477316221059	2.73527673459838	3.3965045354794	3.9442764131049	4.79105408063202	4.6485896755438	5.17874981115688	1.95362642227026	6.71046342876079e-05	0.0022281957624983
Merged-chr16-30504252-4	chr16	30504150	30504350	+	911.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MamGypLTR3|LTR|Gypsy	46328.0	NM_172614	224090.0	Mm.241459	NM_172614	ENSMUSG00000022537	Tmem44	1700007N03Rik|9330161C17Rik|B230220N21	transmembrane protein 44	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-47734934-1	chr18	47734834	47735034	+	542.0	f0_balb.idr	Intergenic	Intergenic	54599.0	NR_152200	100042982.0	Mm.125235	NR_152200		Gm4146	Gm45939	predicted gene 4146	ncRNA	0.939091086308129	0.797603876214205	1.2059561059018	0.765603576349294	1.77028244200812	0.801558250799874	1.95219551009568	1.96143204556073	3.04410601912851	0.0339776342382737	0.259768684531101
Merged-chr8-72308452-2	chr8	72308352	72308552	+	566.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10610.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	-0.898443344149008	-0.883064818360745	-0.891077179145227	-0.893838745863429	-0.736208673427474	-0.0972352593783111	-0.890289402794229	-0.893355649448197	3.24588741766978	0.264981069630163	1
Merged-chr10-61052337-3	chr10	61052209	61052409	+	664.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21006.0	NR_040638	327760.0	Mm.23529	NR_040638	ENSMUSG00000093568	Gm20611	4930565A17	predicted gene 20611	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-15150318-2	chr18	15150218	15150418	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134112, intron 1 of 4)	CpG	1128.0	NM_134112	106931.0	Mm.329299	NM_134112	ENSMUSG00000036225	Kctd1	4933402K10Rik|AI661543|AW553000	potassium channel tetramerisation domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-26600157-1	chr11	26600057	26600257	+	905.0	f1_balb.idr	Intergenic	Intergenic	-6237.0	NM_001252447	69922.0	Mm.285351	NM_027260	ENSMUSG00000064090	Vrk2	2810003O05Rik|AI447698	vaccinia related kinase 2	protein-coding	-1.26550836321643	-1.23538490674683	-1.24673049817958	-1.25605010478787	-1.26497736998827	-0.580802564315158	-1.24416210496749	-1.25438189966081	2.74054745292391	0.426663645876262	1
Merged-chr11-34077611-2	chr11	34077511	34077711	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010696, intron 10 of 20)	(CCA)n|Simple_repeat|Simple_repeat	20943.0	NR_155520	76874.0	Mm.437529	NR_155520		4930469K13Rik	-	RIKEN cDNA 4930469K13 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-54973036-4	chr6	54972920	54973120	+	956.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172729)	promoter-TSS (NM_172729)	-408.0	NM_172729	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	3.33213828093686	3.99897838047007	3.05462979828611	3.57999203935428	3.28599614011509	4.02632732980689	2.66832743386188	3.3704366446032	-0.171892789372499	0.767955373784247	0.998431161219273
Merged-chr4-101741706-4	chr4	101741609	101741809	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146146, intron 4 of 18)	intron (NM_146146, intron 4 of 18)	24302.0	NM_010704	16847.0	Mm.259282	NM_010704	ENSMUSG00000057722	Lepr	LEPROT|Leprb|Modb1|OB-RGRP|Obr|db|diabetes|obese-like|obl	leptin receptor	protein-coding	7.26955037992496	6.82846114555071	7.21335116572324	7.35999840440776	6.82480617125739	6.49020814430687	7.13765837164724	6.30082104515015	-0.485026012472075	0.0181369664017048	0.167390248375119
Merged-chr12-12319555-2	chr12	12319455	12319655	+	621.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001146119, intron 2 of 11)	intron (NM_001146119, intron 2 of 11)	57416.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-78513629-2	chr11	78513529	78513729	+	868.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026389, intron 1 of 10)	intron (NM_026389, intron 1 of 10)	1333.0	NM_026389	67811.0	Mm.197493	NM_026389	ENSMUSG00000001100	Poldip2	1300003F06Rik|Pdip38	polymerase (DNA-directed), delta interacting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-62879711-3	chr14	62879617	62879817	+	719.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175546, intron 1 of 11)	intron (NM_175546, intron 1 of 11)	14175.0	NR_105860	102465311.0		NR_105860	ENSMUSG00000098858	Mir6541	Gm27311|mmu-mir-6541	microRNA 6541	ncRNA	1.76974747460743	1.8396056758317	1.15975466819578	2.78614129882828	1.78476076842667	2.0087968054483	1.41519038490475	2.21721370521717	-0.396986748990513	0.707381046823339	0.998431161219273
Merged-chr12-69365999-4	chr12	69365893	69366093	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6157.0	NM_007481	11845.0	Mm.27308	NM_007481	ENSMUSG00000044147	Arf6	AI788669|AW496366	ADP-ribosylation factor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-120125334-4	chr10	120125243	120125443	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12378.0	NM_080446	117599.0	Mm.214703	NM_080446	ENSMUSG00000020228	Helb	AI447783|D10Ertd664e	helicase (DNA) B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-32141402-2	chr5	32141302	32141502	+	865.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008037, intron 1 of 3)	intron (NM_008037, intron 1 of 3)	4930.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-119353507-5	chr8	119353405	119353605	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	8967.0	NM_024219	68196.0	Mm.358714	NM_024219	ENSMUSG00000031839	Hsbp1	0610007A03Rik|AA408769|Hsp25	heat shock factor binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43960501-4	chr4	43960413	43960613	+	974.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027450, intron 1 of 4)	B4A|SINE|B4	2811.0	NM_027450	384009.0	Mm.22213	NM_027450	ENSMUSG00000028480	Glipr2	5730414A08Rik|C77180|GAPR-1	GLI pathogenesis-related 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-73908134-2	chr13	73908034	73908234	+	950.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29633.0	NM_027182	69716.0	Mm.275095	NM_027182	ENSMUSG00000021569	Trip13	2410002G23Rik|D13Ertd328e	thyroid hormone receptor interactor 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-12461888-4	chr19	12461868	12462068	+	922.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010821, exon 2 of 2)	exon (NM_010821, exon 2 of 2)	1189.0	NM_010821	17476.0	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-131258926-4	chr2	131258802	131259002	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3106.0	NM_001355681	74450.0	Mm.101264	NM_153501	ENSMUSG00000037514	Pank2	4933409I19Rik|AI642621	pantothenate kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46866783-2	chr19	46866683	46866883	+	773.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001102471, intron 4 of 6)	intron (NM_001102471, intron 4 of 6)	95568.0	NM_029810	76952.0	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80072597-2	chr7	80072497	80072697	+	656.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045695, intron 1 of 2)	intron (NR_045695, intron 1 of 2)	2660.0	NR_045695	100859962.0	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-168159978-2	chr2	168159878	168160078	+	556.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-5465.0	NR_040327	77017.0	Mm.407822	NR_040327	ENSMUSG00000087648	E130018N17Rik	-	RIKEN cDNA E130018N17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-130657959-4	chr7	130657841	130658041	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004468, intron 3 of 21)	intron (NM_001004468, intron 3 of 21)	-34615.0	NM_001347637	57752.0	Mm.86322	NM_021314	ENSMUSG00000030852	Tacc2	mKIAA4180	transforming, acidic coiled-coil containing protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114877299-6	chr11	114877243	114877443	+	866.022217	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-12698.0	NM_001347654	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-96548089-4	chr13	96547986	96548186	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023420, intron 1 of 17)	intron (NM_023420, intron 1 of 17)	5351.0	NM_023420	68018.0	Mm.24125	NM_023420	ENSMUSG00000021669	Col4a3bp	2810404O15Rik|9230101K08Rik|AU016711|CERT|GPBP	collagen, type IV, alpha 3 (Goodpasture antigen) binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-58382155-4	chr10	58382066	58382266	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201242, intron 1 of 9)	intron (NM_201242, intron 1 of 9)	10712.0	NM_201242	110829.0	Mm.57734	NM_026148	ENSMUSG00000019920	Lims1	2310016J22Rik|4921524A02Rik|AI507642|AU021743|AW551584|C430041B13Rik|Lims1l|PINCH|PINCH1	LIM and senescent cell antigen-like domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-155158639-4	chr1	155158560	155158760	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021433)	promoter-TSS (NM_021433)	-43.0	NM_021433	58244.0	Mm.66264	NM_021433	ENSMUSG00000026470	Stx6	2310039E05Rik|2410005I16Rik|AA437559|AI415714|AI845861	syntaxin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-101722434-4	chr12	101722349	101722549	+	919.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3926.0	NM_001082976	74413.0	Mm.275939	NM_028924	ENSMUSG00000021187	Tc2n	4933406D09Rik|Mtac2d1|Tac2-N	tandem C2 domains, nuclear	protein-coding	3.25751826974323	3.39535934986322	2.13409278452689	2.8092043749721	1.97572733002953	2.40217180225136	1.44872929328737	2.99353647727362	-1.24188983468412	0.136710625421568	0.577012459125694
Merged-chr12-101976889-1	chr12	101976789	101976989	+	739.0	f0_balb.idr	intron (NM_016856, intron 1 of 14)	intron (NM_016856, intron 1 of 14)	915.0	NM_016856	51786.0	Mm.716	NM_016856	ENSMUSG00000041781	Cpsf2	100kDa|2610024B04Rik|AI662483|Cpsf|MCPSF|mKIAA1367	cleavage and polyadenylation specific factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-136181655-2	chr4	136181567	136181767	+	616.333374	f0_balb.idr|f1_balb.idr	intron (NM_177733, intron 4 of 6)	intron (NM_177733, intron 4 of 6)	885.0	NM_001305399	242705.0	Mm.307932	NM_177733	ENSMUSG00000018983	E2f2	E2F-2	E2F transcription factor 2	protein-coding	-0.491516905499209	-0.479483764776728	-0.483428601005132	-0.486470457280774	0.0829889620422538	-0.478594202028676	0.0998912419655794	-0.485939159316637	3.54035140856989	0.189806385033687	1
Merged-chr11-74770800-4	chr11	74770703	74770903	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026197)	promoter-TSS (NM_026197)	-60.0	NM_026197	67493.0	Mm.45748	NM_026197	ENSMUSG00000010554	Mettl16	2610100D03Rik|2810013M15Rik|A830095F14Rik|AI846133|Mett10d	methyltransferase like 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-110890529-2	chr12	110890429	110890629	+	925.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289510, intron 1 of 19)	intron (NM_001289510, intron 1 of 19)	1265.0	NM_001081057	104859.0	Mm.35583	NM_175336	ENSMUSG00000021275	Tecpr2	4930573I19Rik|AI604920|mKIAA0297	tectonin beta-propeller repeat containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65206012-2	chr9	65205912	65206112	+	685.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-8678.0	NM_177460	214424.0	Mm.31129	NM_177460	ENSMUSG00000032392	Parp16	ARTD15|BC055447|C79952|PARP-16	poly (ADP-ribose) polymerase family, member 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-63307529-4	chr4	63307420	63307620	+	913.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025685, intron 36 of 60)	intron (NM_025685, intron 36 of 60)	-37036.0	NM_008768	18405.0	Mm.4777	NM_008768	ENSMUSG00000039196	Orm1	Agp-1|Agp-2|Orm-1	orosomucoid 1	protein-coding	2.62330316062457	2.66692369648582	3.27407038477725	3.48816339939658	3.57953035297792	2.68730836345368	3.80146431771961	3.36205610090878	0.582240085625004	0.34971787794808	0.850386723313101
Merged-chr6-91585682-1	chr6	91585582	91585782	+	1000.0	f0_balb.idr	Intergenic	Intergenic	69647.0	NM_026309	67678.0	Mm.246693	NM_026309	ENSMUSG00000034192	Lsm3	1010001J12Rik|2610005D18Rik|6030401D18Rik|SMX4|USS2	LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-91071225-2	chr8	91071151	91071351	+	912.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011250, intron 1 of 21)	intron (NM_011250, intron 1 of 21)	1194.0	NM_001282000	19651.0	Mm.235580	NM_011250	ENSMUSG00000031666	Rbl2	PRB2|RBR-2|Rb2|p130	RB transcriptional corepressor like 2	protein-coding	1.1074015710894	1.73013570145457	0.895979958046833	0.676060447623792	0.988544465899599	1.53896270670986	1.07869565298173	0.677842560522941	-0.250802689071377	0.860949586496933	0.998431161219273
Merged-chr10-88351880-4	chr10	88351783	88351983	+	821.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027878, intron 1 of 6)	intron (NM_027878, intron 1 of 6)	5192.0	NM_027878	71712.0	Mm.35450	NM_027878	ENSMUSG00000020057	Dram1	1200002N14Rik|Dram	DNA-damage regulated autophagy modulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-85189925-3	chr13	85189845	85190045	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023243, intron 1 of 8)	intron (NM_023243, intron 1 of 8)	560.0	NM_023243	66671.0	Mm.18474	NM_023243	ENSMUSG00000021548	Ccnh	6330408H09Rik|AI661354|AV102684|AW538719	cyclin H	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-14045967-2	chr10	14045930	14046130	+	771.833374	f0_c57.idr|f1_c57bl6.idr	intron (NM_001358783, intron 2 of 12)	intron (NM_001358783, intron 2 of 12)	79651.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	1.31742466506046	1.9952620138461	1.41590992737072	1.86497331814871	1.32688573669872	1.63468549183324	1.02517252923994	1.87521864471286	-0.561779675103218	0.626413144428883	0.980912176761026
Merged-chr19-46516043-2	chr19	46515943	46516143	+	677.333313	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_053100, exon 6 of 6)	3' UTR (NM_053100, exon 6 of 6)	14395.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-78860101-2	chr12	78860040	78860240	+	794.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_023721, intron 1 of 8)	intron (NM_023721, intron 1 of 8)	1498.0	NM_023721	73834.0	Mm.311549	NM_023721	ENSMUSG00000021114	Atp6v1d	1110004P10Rik|Atp6m|VATD|Vma8	ATPase, H+ transporting, lysosomal V1 subunit D	protein-coding	2.95886040779603	2.75113938203873	3.01968911506367	1.83758619380298	3.14461911680366	4.18478497079443	3.32699057311717	3.04703617420421	1.3175836394034	0.0505702270312069	0.327805059560914
Merged-chr18-61489353-4	chr18	61489236	61489436	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER102c|DNA|hAT-Charlie	-4729.0	NR_045419	442846.0	Mm.417648	NR_045419		A530050N04Rik	-	RIKEN cDNA A530050N04 gene	ncRNA	2.52703473266633	2.07887291090934	3.11610036590072	3.24169146861155	2.03864383804129	2.09425558755209	3.35760397771394	2.87706137499295	-0.199203347647928	0.799662156645255	0.998431161219273
Merged-chr10-84401335-4	chr10	84401229	84401429	+	836.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004363, intron 2 of 6)	intron (NM_001004363, intron 2 of 6)	39142.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53209405-1	chr4	53209305	53209505	+	543.0	f0_balb.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-36791.0	NR_040665	78180.0	Mm.243847	NR_040665	ENSMUSG00000086947	4930522O17Rik	-	RIKEN cDNA 4930522O17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-41599916-4	chr3	41599826	41600026	+	948.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001130184, intron 6 of 10)	B3|SINE|B2	35046.0	NM_001130186	269424.0	Mm.286285	NM_172303	ENSMUSG00000025764	Jade1	AU041499|D530048A03Rik|Phf17|mKIAA1807	jade family PHD finger 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-94711573-2	chr1	94711473	94711673	+	820.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-85869.0	NR_040473	74689.0	Mm.399187	NR_040473	ENSMUSG00000100518	4930440C22Rik	-	RIKEN cDNA 4930440C22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-80052033-2	chr15	80051933	80052133	+	629.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26546.0	NR_028282	100302601.0		NR_028282	ENSMUSG00000077734	Snord83b	MBII-10	small nucleolar RNA, C/D box 83B	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24735308-2	chr17	24735165	24735365	+	996.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_025425, intron 4 of 6)	intron (NM_025425, intron 4 of 6)	-1328.0	NM_013759	27361.0	Mm.28212	NM_013759	ENSMUSG00000075705	Msrb1	D17Wsu82e|SELX|SelR|Sepr|Sepx1	methionine sulfoxide reductase B1	protein-coding	1.33492861710284	1.03613276829227	1.86360713330969	0.779856462828847	1.63212243670671	0.808947031236076	0.794436095493279	1.63911064589842	-0.121599103285366	0.932925564530536	0.998431161219273
Merged-chr5-140704521-1	chr5	140704421	140704621	+	1000.0	f0_c57.idr	promoter-TSS (NM_001276287)	promoter-TSS (NM_001276287)	-490.0	NM_181066	231841.0	Mm.271932	NM_172724	ENSMUSG00000000148	Brat1	AA881470|Baat1	BRCA1-associated ATM activator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5846766-4	chr19	5846635	5846835	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1255.0	NR_003513	66961.0	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-160086564-4	chr2	160086418	160086618	+	987.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	69865.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	2.17218671672369	2.01727844989205	2.36565792516989	1.25351324016418	2.55568531353098	2.69166537806555	1.29065526463201	3.03403988327778	1.15434567472719	0.24356519420595	0.740751247850617
Merged-chr2-122303092-2	chr2	122302991	122303191	+	695.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_025777)	TTS (NM_025777)	4191.0	NM_025777	66811.0	Mm.171333	NM_025777	ENSMUSG00000027225	Duoxa2	9030623N16Rik|Nip2	dual oxidase maturation factor 2	protein-coding	0.543931610404329	0.425911392774986	0.5906545111276	0.932591678874146	0.875454927792155	0.777372284165091	0.870861617662782	0.41474588862907	0.649765021022456	0.693347301471785	1
Merged-chr2-90497661-2	chr2	90497561	90497761	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	RMER15|LTR|ERVL	-18487.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-46678975-2	chr17	46678875	46679075	+	709.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163729, intron 1 of 10)	intron (NM_001163729, intron 1 of 10)	-1478.0	NM_001277310	17256.0	Mm.329083	NM_010787	ENSMUSG00000002768	Mea1	Mea-1	male enhanced antigen 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-130770816-3	chr7	130770661	130770861	+	674.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RCHARR1|DNA|hAT-Charlie	-3308.0	NM_001081038	330660.0	Mm.271550	NM_001081038	ENSMUSG00000040298	Btbd16	E330040A16Rik	BTB (POZ) domain containing 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-75361962-4	chr9	75361875	75362075	+	744.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14217.0	NM_013479	12049.0	Mm.25988	NM_013479	ENSMUSG00000032191	Bcl2l10	AA420380|AU023065|Boo|C85687|Diva	Bcl2-like 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-99464490-4	chr12	99464389	99464589	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14415.0	NM_183186	71375.0	Mm.341972	NM_183186	ENSMUSG00000033713	Foxn3	5430426H20Rik|AA589593|AW556347|Ches1|Ches1l|HTLFL1	forkhead box N3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-75404919-4	chr9	75404845	75405045	+	842.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015806, intron 1 of 5)	MTD|LTR|ERVL-MaLR	4414.0	NM_027418	50772.0	Mm.480076	NM_015806	ENSMUSG00000042688	Mapk6	2610021I23Rik|D130053K17Rik|Erk3|Mapk4|Mapk63|Prkm4|Prkm6	mitogen-activated protein kinase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-55503325-2	chr12	55503225	55503425	+	639.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-10678.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30791138-2	chr2	30791038	30791238	+	995.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10599.0	NM_198000	73598.0	Mm.34166	NM_198000	ENSMUSG00000044320	1700001O22Rik	1700113K14Rik|4930549G18Rik	RIKEN cDNA 1700001O22 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80069521-7	chr7	80069335	80069535	+	983.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045695, intron 2 of 2)	intron (NR_045695, intron 2 of 2)	5822.0	NR_045695	100859962.0	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	2.12543992696038	2.22732257173531	2.70083599833371	1.69249838384826	2.50494555355749	3.11822928833878	3.60105005450758	2.63645151645997	1.59438654601525	0.0408681672289699	0.288475510568248
Merged-chr7-28803159-2	chr7	28803059	28803259	+	924.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7731.0	NM_177301	15388.0	Mm.9043	NM_177301	ENSMUSG00000015165	Hnrnpl	C79783|D830027H13Rik|Hnrpl	heterogeneous nuclear ribonucleoprotein L	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-72373802-4	chr2	72373693	72373893	+	911.158325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023057, intron 7 of 19)	intron (NM_023057, intron 7 of 19)	88092.0	NM_178084	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30524242-2	chr7	30524142	30524342	+	548.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_178252, exon 21 of 22)	exon (NM_178252, exon 21 of 22)	9120.0	NR_036630	100504207.0	Mm.297831	NM_001004161	ENSMUSG00000062132	Arhgap33os	Gm1082	Rho GTPase activating protein 33, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-122534866-2	chr14	122534766	122534966	+	621.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144844, intron 1 of 23)	intron (NM_144844, intron 1 of 23)	538.0	NM_144844	110821.0	Mm.23876	NM_144844	ENSMUSG00000041650	Pcca	C79630	propionyl-Coenzyme A carboxylase, alpha polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-125720267-4	chr8	125720185	125720385	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-13918.0	NM_025636	66566.0	Mm.25296	NM_025636	ENSMUSG00000031851	Ntpcr	2310079N02Rik|AI449709	nucleoside-triphosphatase, cancer-related	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-35067984-4	chr7	35067882	35068082	+	803.924988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-11416.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-148672562-4	chr2	148672461	148672661	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019761)	promoter-TSS (NM_019761)	-54.0	NM_019761	56488.0	Mm.34663	NM_019761	ENSMUSG00000036992	Nxt1	1110001N02Rik	NTF2-related export protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-81719359-4	chr12	81719263	81719463	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001174107, exon 11 of 11)	3' UTR (NM_001174107, exon 11 of 11)	61807.0	NM_177395	338372.0	Mm.35284	NM_177395	ENSMUSG00000042724	Map3k9	E130314H24Rik|Mlk1|Prke1	mitogen-activated protein kinase kinase kinase 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-131088685-4	chr2	131088692	131088892	+	767.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2027.0	NM_011426	20612.0	Mm.1374	NM_011426	ENSMUSG00000027322	Siglec1	Cd169|Siglec-1|Sn	sialic acid binding Ig-like lectin 1, sialoadhesin	protein-coding	1.84350861456342	2.22349652057356	2.28254957283716	2.53462916474486	1.69866220480667	3.12692238772214	2.30064503047813	1.95028837268341	0.344678920406131	0.696483721708184	0.997929106458421
Merged-chr6-83032115-2	chr6	83032015	83032215	+	568.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_010070, intron 4 of 4)	intron (NM_010070, intron 4 of 4)	1356.0	NM_010070	13448.0	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65525894-6	chr9	65525825	65526025	+	860.1555179999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54162.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-90391800-2	chr3	90391700	90391900	+	999.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_145540, exon 30 of 30)	3' UTR (NM_145540, exon 30 of 30)	-1862.0	NM_011988	26568.0	Mm.45519	NM_011988	ENSMUSG00000027932	Slc27a3	Acsvl3|FATP-3|FATP3|Vlcs-3	solute carrier family 27 (fatty acid transporter), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120511860-2	chr11	120511760	120511960	+	734.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC-int|LTR|ERVL-MaLR	-18867.0	NM_008101	14527.0	Mm.22329	NM_008101	ENSMUSG00000025127	Gcgr	GR	glucagon receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30324606-5	chr7	30324678	30324878	+	717.799988	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2403.0	NM_001033140	68332.0	Mm.6844	NM_001033140	ENSMUSG00000074211	Sdhaf1	0610010E21Rik|AI430885|AW490662|Lyrm8	succinate dehydrogenase complex assembly factor 1	protein-coding	2.22705551961053	1.11237765671456	1.95641558978524	1.63924505453281	2.31556002523777	1.1175568173891	2.18933578780374	1.30101604450885	0.124651087439899	0.914953707615878	0.998431161219273
Merged-chr9-44169323-4	chr9	44169213	44169413	+	913.091675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007619, intron 3 of 15)	intron (NM_007619, intron 3 of 15)	34655.0	NM_001359530	84004.0	Mm.275003	NM_023061	ENSMUSG00000032135	Mcam	1-gicerin|AV025631|CD146|CD149|Muc18|s-endo|s-gicerin	melanoma cell adhesion molecule	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-146804532-4	chr5	146804439	146804639	+	692.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-9583.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-148523149-4	chr2	148523047	148523247	+	966.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-79612.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125588786-2	chr6	125588686	125588886	+	654.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011708, intron 7 of 51)	intron (NM_011708, intron 7 of 51)	35838.0	NM_011708	22371.0	Mm.22339	NM_011708	ENSMUSG00000001930	Vwf	6820430P06Rik|AI551257|B130011O06Rik|C630030D09|F8VWF|VWD	Von Willebrand factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-50395878-2	chr16	50395778	50395978	+	647.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027444, intron 2 of 16)	intron (NM_027444, intron 2 of 16)	36511.0	NM_027444	70508.0	Mm.28940	NM_027444	ENSMUSG00000022641	Bbx	5530401J07Rik|5730403O13Rik	bobby sox HMG box containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-138464102-3	chr4	138463999	138464199	+	863.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8951.0	NM_025451	66259.0	Mm.41603	NM_025451	ENSMUSG00000046447	Camk2n1	1810006K23Rik|AI848599|AI891706	calcium/calmodulin-dependent protein kinase II inhibitor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-77956763-4	chr15	77956654	77956854	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001168260)	promoter-TSS (NM_001168260)	-32.0	NM_001017983	239554.0	Mm.295605	NM_001017983	ENSMUSG00000016552	Foxred2	A430097D04Rik|D15Bwg0759e|Gm304	FAD-dependent oxidoreductase domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-135726129-4	chr1	135726037	135726237	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360782, intron 1 of 5)	intron (NM_001360782, intron 1 of 5)	-3030.0	NR_153810	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89859805-2	chr3	89859705	89859905	+	832.333374	f1_balb.idr|f1_c57bl6.idr	TTS (NM_172530)	TTS (NM_172530)	28435.0	NM_172530	214547.0	Mm.225	NM_172530	ENSMUSG00000046280	She	9430022A14	src homology 2 domain-containing transforming protein E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-114699770-2	chr5	114699670	114699870	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPLTR2a2_Mm|LTR|ERVK	-8009.0	NM_029992	77832.0	Mm.239698	NM_029992	ENSMUSG00000002486	Tchp	A930031F18Rik|AV279199	trichoplein, keratin filament binding	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-102185293-4	chr11	102185167	102185367	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172947)	promoter-TSS (NM_172947)	-11.0	NM_172947	268490.0	Mm.259079	NM_172947	ENSMUSG00000020922	Lsm12	1110032E16Rik|1110059P07|2600001B17Rik	LSM12 homolog	protein-coding	1.97832693173749	2.82780992693822	3.67931511970968	2.64750914521836	2.29101695265298	1.51179304788668	2.63129052776457	3.44021845624707	-0.48354196094093	0.568246538824257	0.962718661854691
Merged-chr18-56716514-3	chr18	56716380	56716580	+	832.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010721, intron 1 of 10)	intron (NM_010721, intron 1 of 10)	8667.0	NM_010721	16906.0	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-69365359-4	chr18	69365250	69365450	+	660.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 3 of 19)	(T)n|Simple_repeat|Simple_repeat	19190.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-111332135-2	chr14	111332035	111332235	+	710.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus4|LINE|L1	-342980.0	NM_198865	75409.0	Mm.235097	NM_029273	ENSMUSG00000033214	Slitrk5	2610019D03Rik	SLIT and NTRK-like family, member 5	protein-coding	-0.931541515636401	-0.915648305286264	-0.22697549340194	-0.927474378137587	-0.930936169585535	-0.912864150985445	-0.924327814585782	-0.75144580372184	-2.09524755758564	0.491268854241007	1
Merged-chr2-94178526-2	chr2	94178426	94178626	+	791.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20617.0	NM_019657	56348.0	Mm.22505	NM_019657	ENSMUSG00000027195	Hsd17b12	2610510O05Rik|AI172963|KIK-I|Kik1	hydroxysteroid (17-beta) dehydrogenase 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3699660-4	chr19	3699544	3699744	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8649.0	NM_001358256	72056.0	Mm.23780	NM_028077	ENSMUSG00000035372	1810055G02Rik	AI256204	RIKEN cDNA 1810055G02 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-3034185-2	chr9	3034085	3034285	+	959.583374	f1_balb.idr|f1_c57bl6.idr	Intergenic	GSAT_MM|Satellite|Satellite	4558.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88631159-4	chr3	88631071	88631271	+	749.479187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198913, intron 2 of 21)	intron (NM_001198913, intron 2 of 21)	9777.0	NM_001198912	16800.0	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-108204076-4	chr12	108203974	108204174	+	988.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009832)	TTS (NM_009832)	24336.0	NM_009832	12454.0	Mm.474441	NM_009832	ENSMUSG00000021258	Ccnk	AW123198|AW413594|CPR4|CycK	cyclin K	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118682418-2	chr9	118682330	118682530	+	810.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 13 of 27)	intron (NM_133721, intron 13 of 27)	-29262.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	2.34001194452964	2.2161101318928	1.8632593649016	2.19031885420324	2.63478618420219	1.28238352051959	1.25398492726583	2.30376916704949	-0.300854217372553	0.773354540650242	0.998431161219273
Merged-chr19-3909300-2	chr19	3909200	3909400	+	727.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271443, intron 5 of 6)	intron (NM_001271443, intron 5 of 6)	-2167.0	NM_001136091	27060.0	Mm.271689	NM_016921	ENSMUSG00000001750	Tcirg1	ATP6N1C|ATP6a3|Atp6i|OC-116|OPTB1|Stv1|TIRC7|Vph1|oc	T cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 protein A3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84437009-3	chr8	84436855	84437055	+	893.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252060, intron 1 of 47)	intron (NM_001252060, intron 1 of 47)	21591.0	NM_001252061	12286.0	Mm.334658	NM_007578	ENSMUSG00000034656	Cacna1a	APCA|BI|Caca1a|Cacnl1a4|Cav2.1|Ccha1a|EA2|FHM|HPCA|MHP|MHP1|SCA6|alpha1A|la|nmf352|rkr|smrl|tg	calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	protein-coding	1.88786168094842	2.14781752849054	1.19563194864563	1.43453218848832	2.61957650339299	3.52810062309264	2.23204811543958	1.85274159824019	2.23397996889957	0.0198516572550673	0.178406181573315
Merged-chr1-177261639-3	chr1	177261598	177261798	+	759.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TC)n|Simple_repeat|Simple_repeat	-12931.0	NM_011785	23797.0	Mm.235194	NM_011785	ENSMUSG00000019699	Akt3	AI851531|D930002M15Rik|Nmf350	thymoma viral proto-oncogene 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-182108693-1	chr1	182108593	182108793	+	598.0	f0_balb.idr	Intergenic	Intergenic	-16044.0	NM_012058	27058.0	Mm.273196	NM_012058	ENSMUSG00000026511	Srp9	9kDa	signal recognition particle 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70231980-3	chr14	70231882	70232082	+	780.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304991, intron 10 of 14)	intron (NM_001304991, intron 10 of 14)	-24311.0	NM_011366	20410.0	Mm.5068	NM_011366	ENSMUSG00000022091	Sorbs3	SCAM-1|SH3P3|Sh3d4|vinexin-g	sorbin and SH3 domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-43409328-4	chr16	43409235	43409435	+	893.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181058, intron 2 of 6)	intron (NM_181058, intron 2 of 6)	10861.0	NR_046026	626693.0	Mm.447083	NR_046026	ENSMUSG00000085499	Gm15713	-	predicted gene 15713	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-14651598-4	chr8	14651496	14651696	+	866.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172910, intron 4 of 15)	intron (NM_172910, intron 4 of 15)	-236940.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	4.58416936207498	3.33672317079451	4.23477207154835	4.12403880805477	3.95606063417285	1.8578326490205	3.45056588768192	3.33987581317512	-1.12412003947403	0.0597131634620411	0.362081469954971
Merged-chr12-99153627-2	chr12	99153527	99153727	+	753.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9181.0	NR_038130	67639.0	Mm.87374	NR_038130	ENSMUSG00000113210	4930474N09Rik	-	RIKEN cDNA 4930474N09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-118179762-4	chr6	118179673	118179873	+	977.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080780, intron 4 of 18)	intron (NM_001080780, intron 4 of 18)	17971.0	NM_009050	19713.0	Mm.57199	NM_009050	ENSMUSG00000030110	Ret	PTC|RET51|RET9|c-Ret	ret proto-oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105348042-4	chr8	105347947	105348147	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081332)	promoter-TSS (NM_001081332)	-77.0	NM_177699	234686.0	Mm.87724	NM_177699	ENSMUSG00000014778	Fhod1	BC017144|FHOS|FHOS1	formin homology 2 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30268676-3	chr2	30268567	30268767	+	736.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252571, intron 1 of 9)	intron (NM_001252571, intron 1 of 9)	1848.0	NM_001252570	227696.0	Mm.297949	NM_172267	ENSMUSG00000079484	Phyhd1	-	phytanoyl-CoA dioxygenase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-128242241-2	chr7	128242141	128242341	+	699.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_146205, exon 4 of 6)	exon (NM_146205, exon 4 of 6)	-4210.0	NM_177001	100043133.0	Mm.183647	NM_177001	ENSMUSG00000062944	9130023H24Rik	GLI4	RIKEN cDNA 9130023H24 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-57337225-2	chr17	57337125	57337325	+	740.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	A-rich|Low_complexity|Low_complexity	-21461.0	NM_001355723	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-92878813-4	chr7	92878777	92878977	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028243, intron 1 of 8)	intron (NM_028243, intron 1 of 8)	3624.0	NM_028243	72461.0	Mm.389969	NM_028243	ENSMUSG00000061119	Prcp	2510048K03Rik|2610104A14Rik|AI451719|HUMPCP|PCP	prolylcarboxypeptidase (angiotensinase C)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118456453-2	chr11	118456353	118456553	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-1458.0	NR_045902	100126224.0	Mm.441989	NR_045902	ENSMUSG00000086514	Gm11747	-	predicted gene 11747	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-66092317-4	chr15	66092216	66092416	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152923, intron 1 of 14)	intron (NM_152923, intron 1 of 14)	-115512.0	NM_001145096	654498.0	Mm.364550	NM_001145096	ENSMUSG00000072511	Hhla1	F930104E18Rik	HERV-H LTR-associating 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-97591522-2	chr15	97591422	97591622	+	803.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	114300.0	NM_028003	71919.0	Mm.12255	NM_028003	ENSMUSG00000022466	Rpap3	2310042P20Rik|D15Ertd682e	RNA polymerase II associated protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135150626-4	chr4	135150516	135150716	+	741.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019732, intron 1 of 5)	intron (NM_019732, intron 1 of 5)	29971.0	NM_019732	12399.0	Mm.378894	NM_019732	ENSMUSG00000070691	Runx3	AML2|Cbfa3|Pebp2a3	runt related transcription factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-120049572-4	chr9	120049470	120049670	+	953.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009987, exon 2 of 2)	3' UTR (NM_009987, exon 2 of 2)	18726.0	NM_009987	13051.0	Mm.44065	NM_009987	ENSMUSG00000052336	Cx3cr1	-	chemokine (C-X3-C motif) receptor 1	protein-coding	4.10974665918843	3.19573237453348	3.65040776469338	3.29952541176823	4.05821462408429	4.25438266675014	2.06478645659427	3.56654714610864	0.134238620061375	0.828079381997155	0.998431161219273
Merged-chr7-27166712-6	chr7	27166549	27166749	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357767)	promoter-TSS (NM_001357767)	153.0	NM_053208	112406.0	Mm.29978	NM_053208	ENSMUSG00000058709	Egln2	0610011A13Rik|C85656|Hif-p4h-1|Ier4|Phd1|SM-20	egl-9 family hypoxia-inducible factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52604667-2	chr13	52604567	52604767	+	711.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_011518, intron 1 of 13)	RMER15|LTR|ERVL	7785.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-86016126-3	chr9	86016039	86016239	+	894.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	173287.0	NM_001164792	21983.0	Mm.20864	NM_011627	ENSMUSG00000035274	Tpbg	5T4|AW495680|WAIF1	trophoblast glycoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-60526332-7	chr18	60526239	60526439	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001357462, exon 1 of 14)	exon (NM_001357462, exon 1 of 14)	185.0	NM_001357462	67665.0	Mm.272801	NM_026302	ENSMUSG00000024603	Dctn4	1110001K06Rik|4930547K17Rik|C130039E17Rik|p62	dynactin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-82753797-4	chr6	82753713	82753913	+	995.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013820, intron 2 of 17)	intron (NM_013820, intron 2 of 17)	20641.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141464674-3	chr7	141464524	141464724	+	858.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_152220)	promoter-TSS (NR_152220)	-720.0	NR_152220	100126795.0	Mm.386851	NR_152219	ENSMUSG00000073787	Gm10575	-	predicted gene 10575	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-63999246-2	chr15	63999146	63999346	+	613.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144846, intron 1 of 11)	intron (NM_144846, intron 1 of 11)	-1180.0	NM_001360035	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-98271816-2	chr12	98271716	98271916	+	809.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008152, intron 1 of 1)	Lx2B2|LINE|L1	3181.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69079047-4	chr11	69078949	69079149	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	5623.0	NR_028566	100216530.0	Mm.453052	NR_028566	ENSMUSG00000064899	Snord118	MBI-34	small nucleolar RNA, C/D box 118	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-111165665-4	chr10	111165555	111165755	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003717, intron 1 of 22)	CpG	853.0	NM_175489	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-28949398-3	chr6	28949291	28949491	+	724.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73228.0	NR_029567	387237.0		NR_029567	ENSMUSG00000065469	Mir129-1	Mirn129-1|Mirn129b|miR-129b|mir-129-1	microRNA 129-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-58342247-1	chr7	58342147	58342347	+	543.0	f1_balb.idr	Intergenic	Intergenic	-315955.0	NM_009728	11982.0	Mm.135129	NM_009728	ENSMUSG00000025324	Atp10a	Atp10c|pfatp	ATPase, class V, type 10A	protein-coding	1.49620760319968	0.626436652502296	0.60579141486385	0.589268953413469	1.14294324483779	0.63097878215629	1.2762630165974	2.52907124230124	2.26052117128428	0.131516655747816	0.567281950631593
Merged-chr6-57756880-4	chr6	57756778	57756978	+	903.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146168, intron 4 of 4)	intron (NM_146168, intron 4 of 4)	54423.0	NM_133737	71835.0	Mm.274904	NM_133737	ENSMUSG00000062190	Lancl2	1700003F10Rik	LanC (bacterial lantibiotic synthetase component C)-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-35994383-2	chr10	35994283	35994483	+	627.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR9A2|LTR|ERVK	-512424.0	NM_001253355	319415.0	Mm.332442	NM_001081208	ENSMUSG00000044499	Hs3st5	D930005L05Rik|Gm1151|Hs3ost5	heparan sulfate (glucosamine) 3-O-sulfotransferase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191718902-3	chr1	191718757	191718957	+	694.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001134829, intron 1 of 7)	CpG	462.0	NM_001134829	226856.0	Mm.277958	NM_172266	ENSMUSG00000026623	Lpgat1	AI649174|AW112037|BC013667	lysophosphatidylglycerol acyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-77663942-4	chr18	77663821	77664021	+	899.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178670, intron 2 of 4)	Tigger7|DNA|TcMar-Tigger	50089.0	NM_178670	212163.0	Mm.23293	NM_178670	ENSMUSG00000047466	8030462N17Rik	Akd2|Ark2N	RIKEN cDNA 8030462N17 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81129547-4	chr10	81129438	81129638	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6733.0	NM_010731	16969.0	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-42096251-4	chr13	42096146	42096346	+	967.18335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007772, intron 2 of 8)	intron (NM_007772, intron 2 of 8)	44225.0	NM_007772	110521.0	Mm.4808	NM_007772	ENSMUSG00000021366	Hivep1	Cryabp1	human immunodeficiency virus type I enhancer binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-180278433-2	chr2	180278333	180278533	+	746.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_173031, intron 11 of 12)	intron (NM_173031, intron 11 of 12)	-4968.0	NM_145851	252966.0	Mm.386884	NM_145851	ENSMUSG00000038990	Cables2	ik3-2	CDK5 and Abl enzyme substrate 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-85072804-4	chr16	85072689	85072889	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198825, intron 5 of 15)	intron (NM_001198825, intron 5 of 15)	100578.0	NR_045889	100038614.0	Mm.441351	NR_045889	ENSMUSG00000115518	Gm10791	-	predicted gene 10791	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-32153614-2	chr4	32153520	32153720	+	672.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	189513.0	NM_172688	26409.0	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding	3.52478106557674	3.80134249175173	3.59491991399446	4.66216480829916	3.33674119154906	2.15952523538332	4.25678269261884	3.42674172121409	-0.701016284597063	0.245208385894557	0.744321968233217
Merged-chr12-36029085-1	chr12	36028985	36029185	+	589.0	f1_c57bl6.idr	intron (NM_025359, intron 1 of 5)	RSINE1|SINE|B4	13393.0	NM_025359	66109.0	Mm.254663	NM_025359	ENSMUSG00000020577	Tspan13	1100001I23Rik|NET-6|Tm4sf13	tetraspanin 13	protein-coding	0.0526630306312387	0.862839370682284	0.0678271000365148	0.401453229765789	0.0540834016797621	0.876116044370203	0.0694395596529305	0.0631537384748314	-0.378342102421375	0.859715986498998	1
Merged-chr1-155293625-4	chr1	155293531	155293731	+	884.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011273, intron 11 of 14)	intron (NM_011273, intron 11 of 14)	123813.0	NM_011273	19775.0	Mm.266215	NM_011273	ENSMUSG00000026469	Xpr1	Rmc-1|Rmc1|Sxv|Syg1|XR	xenotropic and polytropic retrovirus receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80133633-2	chr10	80133533	80133733	+	548.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_036582, intron 9 of 10)	intron (NR_036582, intron 9 of 10)	3754.0	NM_001195268	100503659.0	Mm.485395	NM_015761	ENSMUSG00000035640	Cbarp	9630008F14|Dos|R29144/1	calcium channel, voltage-dependent, beta subunit associated regulatory protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135570083-2	chr5	135569983	135570183	+	663.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_019577, exon 3 of 3)	3' UTR (NM_019577, exon 3 of 3)	2966.0	NM_019577	56221.0	Mm.31505	NM_019577	ENSMUSG00000004814	Ccl24	CKb-6|MPIF-2|Scya24	chemokine (C-C motif) ligand 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75533643-2	chr11	75533543	75533743	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199284, intron 2 of 13)	intron (NM_001199284, intron 2 of 13)	1531.0	NM_001199283	215113.0	Mm.11186	NM_173388	ENSMUSG00000038178	Slc43a2	7630402D21Rik|BC042513|Lat4	solute carrier family 43, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129340420-1	chr2	129340320	129340520	+	736.0	f0_balb.idr	Intergenic	Intergenic	-29482.0	NR_015474	329514.0	Mm.207315	NM_177848	ENSMUSG00000074805	Il1bos	9430083I22|Gm14047	interleukin 1 beta, opposite strand	ncRNA	0.584786278489883	0.839498591825706	0.443948052684913	1.38023924535718	0.728759910048184	0.455262864164702	0.445994579444621	1.13140569416134	-0.711152173259804	0.672052747615307	1
Merged-chr12-8521610-4	chr12	8521518	8521718	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17948.0	NM_001038660	328059.0	Mm.46326	NM_177802	ENSMUSG00000020600	Slc7a15	Arpat	solute carrier family 7 (cationic amino acid transporter, y+ system), member 15	protein-coding	6.01723449789053	5.90247461153092	6.0997962399993	5.78527997524746	5.77568185350529	5.5764959956703	5.9362465414122	4.87042744227219	-0.404436324659095	0.138006914256356	0.579764340773025
Merged-chr11-97029928-4	chr11	97029846	97030046	+	987.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146027)	promoter-TSS (NM_146027)	-6.0	NM_146027	217140.0	Mm.46189	NM_146027	ENSMUSG00000020877	Scrn2	AV001119|D11Moh48|SES2	secernin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-116047557-2	chr6	116047457	116047657	+	552.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177412, intron 3 of 5)	intron (NM_177412, intron 3 of 5)	-52552.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105226093-3	chr8	105226008	105226208	+	802.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145604, intron 1 of 15)	intron (NM_145604, intron 1 of 15)	920.0	NM_145604	234678.0	Mm.27186	NM_145604	ENSMUSG00000031889	D230025D16Rik	BC006874|Lin10	RIKEN cDNA D230025D16 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-103371828-2	chr11	103371728	103371928	+	713.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183034, intron 8 of 11)	intron (NM_183034, intron 8 of 11)	-8136.0	NM_001205236	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-64957673-4	chr18	64957532	64957732	+	998.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114386, intron 1 of 30)	intron (NM_001114386, intron 1 of 30)	-65895.0	NM_031881	83814.0	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	5.83264998305838	5.44889574835473	6.19424623800905	5.93570326671355	4.53967235493807	5.57989398990977	5.25699864017698	5.24453763667349	-0.781544902513673	0.00876564303044736	0.098994085470942
Merged-chr19-47461630-3	chr19	47461536	47461736	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008018, intron 1 of 14)	intron (NM_008018, intron 1 of 14)	2775.0	NM_001164717	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	1.89957839483474	2.81141061045149	2.43405821165651	3.58290565106838	3.75652679814294	3.06684369322421	2.60298905670902	2.64803294064564	0.48067911656179	0.521111549347456	0.947836760490745
Merged-chr4-43537802-2	chr4	43537688	43537888	+	616.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_011602, exon 43 of 57)	exon (NM_011602, exon 43 of 57)	-14234.0	NM_001277875	22004.0	Mm.646	NM_009416	ENSMUSG00000028464	Tpm2	Tpm-2|Trop-2	tropomyosin 2, beta	protein-coding	-0.182534527491087	-1.00895016391444	-1.0218572941639	-1.02617529563146	-1.02981053641889	-1.006153134946	-1.01893540279166	-1.02572713344884	-3.09936526392938	0.343406696059999	1
Merged-chr7-110769417-3	chr7	110769309	110769509	+	928.638916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276301, intron 1 of 14)	intron (NM_001276301, intron 1 of 14)	1203.0	NM_001276301	11717.0	Mm.3238	NM_009667	ENSMUSG00000005686	Ampd3	-	adenosine monophosphate deaminase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-79865493-4	chr2	79865399	79865599	+	887.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001009978, intron 11 of 12)	intron (NM_001009978, intron 11 of 12)	42900.0	NM_001009979	18573.0	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-67062890-3	chr3	67062758	67062958	+	744.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356280, intron 3 of 7)	intron (NM_001356280, intron 3 of 7)	76891.0	NM_001356273	66880.0	Mm.316418	NM_025822	ENSMUSG00000034544	Rsrc1	1200013F24Rik|SRrp53	arginine/serine-rich coiled-coil 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84204187-4	chr8	84204104	84204304	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4314.0	NR_029740	387216.0		NR_029740	ENSMUSG00000065611	Mir23a	Mirn23a|mir-23a|mmu-mir-23a	microRNA 23a	ncRNA	5.67398539650443	5.73919770796961	5.34000091167963	6.17768527370676	5.31797147594552	5.63064224047326	5.50005274190502	5.99822116670765	-0.150371225303065	0.590545380578258	0.969417621229962
Merged-chr3-135607316-4	chr3	135607201	135607401	+	830.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008689, intron 13 of 24)	intron (NM_008689, intron 13 of 24)	84246.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-23762308-1	chr17	23762208	23762408	+	567.0	f1_c57bl6.idr	exon (NM_153791, exon 3 of 7)	exon (NM_153791, exon 3 of 7)	9283.0	NM_153791	224613.0	Mm.328835	NM_153791	ENSMUSG00000040097	Flywch1	E030034P13Rik|mKIAA1552	FLYWCH-type zinc finger 1	protein-coding	-0.538166586446789	-0.520889168384771	-0.526478050605906	0.621286077585484	-0.537068675399384	-0.51963860584716	-0.308082561010418	-0.530072424341037	-2.95730586138133	0.256276433036847	1
Merged-chr16-14352801-4	chr16	14352706	14352906	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8752.0	NM_008576	17250.0	Mm.196634	NM_008576	ENSMUSG00000023088	Abcc1	Abcc1a|Abcc1b|MRP|Mdrap|Mrp1	ATP-binding cassette, sub-family C (CFTR/MRP), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-49035648-2	chr7	49035548	49035748	+	712.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111016, intron 2 of 38)	ORR1D2|LTR|ERVL-MaLR	76575.0	NM_001111016	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-12011795-4	chr19	12011717	12011917	+	990.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24923.0	NM_146680	258675.0	Mm.271517	NM_146680	ENSMUSG00000067529	Olfr1423	MOR239-3	olfactory receptor 1423	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-80757994-2	chr12	80757894	80758094	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001008423, exon 2 of 2)	exon (NM_001008423, exon 2 of 2)	2721.0	NM_001008423	380768.0	Mm.29367	NM_001008423	ENSMUSG00000062961	Ccdc177	Gm1568	coiled-coil domain containing 177	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-10965568-2	chr16	10965468	10965668	+	873.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019980, intron 2 of 3)	intron (NM_019980, intron 2 of 3)	27553.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-110794744-2	chr10	110794649	110794849	+	768.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49310.0	NM_178609	52679.0	Mm.11747	NM_178609	ENSMUSG00000020185	E2f7	A630014C11Rik|D10Ertd739e|E2F-7	E2F transcription factor 7	protein-coding	1.6648264090423	2.48319658360206	1.80396112100312	1.75330745446865	1.13364720123269	2.5024402101709	1.6462435357179	2.33744781723955	0.138147461778947	0.89444110674181	0.998431161219273
Merged-chr9-44089456-4	chr9	44089352	44089552	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198092, intron 3 of 12)	intron (NM_198092, intron 3 of 12)	4532.0	NM_198091	53376.0	Mm.272770	NM_016808	ENSMUSG00000032010	Usp2	B930035K21Rik|Ubp41	ubiquitin specific peptidase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-55115075-2	chr15	55114975	55115175	+	713.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145470, intron 1 of 8)	RSINE1|SINE|B4	-1493.0	NR_045093	100503794.0	Mm.360519	NR_045093	ENSMUSG00000053749	Gm9920	-	predicted gene 9920	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-4222530-4	chr11	4222416	4222616	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_028022)	TTS (NM_028022)	4265.0	NM_028022	71962.0	Mm.7852	NM_028022	ENSMUSG00000020424	Gatsl3	2410008K03Rik|Castor1	GATS protein-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-75276719-4	chr3	75276576	75276776	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6598.0	NM_026460	67931.0	Mm.259446	NM_026460	ENSMUSG00000034139	Serpini2	Spi14	serine (or cysteine) peptidase inhibitor, clade I, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-156735868-4	chr1	156735757	156735957	+	913.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16947.0	NM_145413	215015.0	Mm.229107	NM_145413	ENSMUSG00000033557	Fam20b	C530043G21Rik|mKIAA0475	family with sequence similarity 20, member B	protein-coding	1.19950380427332	1.0654078644414	2.06970232627891	2.00513948274705	1.54639127525137	2.16766009655292	2.61126433314252	1.02227737505709	0.817093496330427	0.487637274374441	0.93292314520217
Merged-chr8-33641890-4	chr8	33641759	33641959	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_178648, exon 1 of 8)	exon (NM_178648, exon 1 of 8)	117.0	NM_178648	108159.0	Mm.29301	NM_178648	ENSMUSG00000052906	Ubxn8	D0H8S2298E|Rep-8|Rep8h|Ubxd6	UBX domain protein 8	protein-coding	3.86992108550651	3.77410789024723	4.47307436659099	2.9187742571013	4.30695775329366	3.88433068394133	4.62864627664743	2.26157433817107	0.208913826118675	0.729038322888113	0.998431161219273
Merged-chr6-113661698-4	chr6	113661623	113661823	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 2 of 11)	intron (NM_001113553, intron 2 of 11)	23256.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-64276488-4	chr15	64276407	64276607	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 3 of 28)	intron (NM_001276461, intron 3 of 28)	36166.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-22478886-4	chr8	22478771	22478971	+	705.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011394, intron 1 of 10)	intron (NM_011394, intron 1 of 10)	-1992.0	NM_001146117	102032.0	Mm.378231	NM_001012667	ENSMUSG00000031534	Smim19	AI316807|BG694986|EST-c39	small integral membrane protein 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139407273-6	chr5	139407161	139407361	+	947.0793460000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177000, intron 1 of 1)	intron (NM_177000, intron 1 of 1)	874.0	NM_177000	319772.0	Mm.440271	NM_177000	ENSMUSG00000044092	C130050O18Rik	-	RIKEN cDNA C130050O18 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-58073444-4	chr13	58073341	58073541	+	878.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195075, intron 5 of 16)	intron (NM_001195075, intron 5 of 16)	28987.0	NM_001195075	100503085.0	Mm.379256	NM_001195075	ENSMUSG00000014164	Klhl3	7530408C15Rik|AI430941|EG627648	kelch-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-57424097-4	chr14	57424005	57424205	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009376)	promoter-TSS (NM_009376)	34.0	NM_009376	21821.0	Mm.4653	NM_009376	ENSMUSG00000040040	Ift88	AW552028|Tg737|Tg737Rpw|TgN737Rpw|Ttc10|flexo|fxo|orpk|polaris	intraflagellar transport 88	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-43265393-4	chr17	43265309	43265509	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4938.0	NM_133776	77596.0	Mm.159950	NM_133776	ENSMUSG00000041293	Adgrf1	5031409J19Rik|Gpr110|KPG_009	adhesion G protein-coupled receptor F1	protein-coding	4.75385851263214	4.99414890257188	5.03375402548342	4.76139894824829	4.26913688884484	4.98486393716237	4.60724314446358	4.52337864478156	-0.341388691818704	0.325652298071919	0.827782420413875
Merged-chr15-57892536-4	chr15	57892451	57892651	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024207)	promoter-TSS (NM_024207)	-133.0	NM_024207	67819.0	Mm.289387	NM_024207	ENSMUSG00000022365	Derl1	1110021N07Rik|AI195141|AW551338|Derlin-1	Der1-like domain family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-47318657-2	chr4	47318557	47318757	+	604.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13A2|LTR|ERVK	-34565.0	NM_001312868	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55601315-6	chr14	55601198	55601398	+	729.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_194346, exon 16 of 21)	exon (NM_194346, exon 16 of 21)	-2687.0	NM_008394	16391.0	Mm.2032	NM_008394	ENSMUSG00000002325	Irf9	Irf-9|Isgf3g|p48	interferon regulatory factor 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-59702544-4	chr10	59702460	59702660	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291443)	promoter-TSS (NM_001291443)	-3.0	NM_001359267	216001.0	Mm.27199	NM_144822	ENSMUSG00000020111	Micu1	C730016L05Rik|Calc|Cbara1	mitochondrial calcium uptake 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-21006899-4	chr11	21006794	21006994	+	964.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-84430.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36711756-2	chr1	36711656	36711856	+	934.1666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-1831.0	NM_146107	226977.0	Mm.28521	NM_146107	ENSMUSG00000037351	Actr1b	2310066K23Rik|AA960180|AI851923|Arp1b	ARP1 actin-related protein 1B, centractin beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-102744585-2	chr2	102744485	102744685	+	837.6999509999999	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_153852, exon 3 of 3)	non-coding (NR_153852, exon 3 of 3)	2175.0	NR_153852	102637542.0	Mm.371582	NR_153852		Gm13872	-	predicted gene 13872	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-25547445-3	chr19	25547344	25547544	+	655.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015826, intron 3 of 4)	intron (NM_015826, intron 3 of 4)	41738.0	NM_015826	50796.0	Mm.391208	NM_015826	ENSMUSG00000024837	Dmrt1	-	doublesex and mab-3 related transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-42101614-4	chr13	42101500	42101700	+	877.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007772, intron 2 of 8)	intron (NM_007772, intron 2 of 8)	49579.0	NM_007772	110521.0	Mm.4808	NM_007772	ENSMUSG00000021366	Hivep1	Cryabp1	human immunodeficiency virus type I enhancer binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-104534576-4	chr8	104534474	104534674	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001301164)	promoter-TSS (NM_001301164)	63.0	NM_144931	234664.0	Mm.237670	NM_144931	ENSMUSG00000031878	Nae1	59kDa|Appbp1	NEDD8 activating enzyme E1 subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-68795807-3	chr7	68795710	68795910	+	852.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46572.0	NM_025549	66412.0	Mm.251199	NM_025549	ENSMUSG00000042659	Arrdc4	2410003C09Rik|AV216361	arrestin domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127524710-2	chr10	127524610	127524810	+	660.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_183297)	TTS (NM_183297)	-2266.0	NM_028230	108037.0	Mm.29890	NM_028230	ENSMUSG00000025403	Shmt2	2700043D08Rik|AA408223|AA986903|SHMT	serine hydroxymethyltransferase 2 (mitochondrial)	protein-coding	-0.499940950918087	-0.487518524828365	0.0891561271406926	-0.494726023626598	-0.499164980458282	-0.486601867615524	0.100277611126392	-0.494177430718284	0.0410194320726077	0.98816738256539	1
Merged-chr16-35867983-2	chr16	35867883	35868083	+	705.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039530, intron 1 of 16)	intron (NM_001039530, intron 1 of 16)	3399.0	NM_001039530	547253.0	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-22746962-4	chr2	22746843	22747043	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27384.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-90907714-6	chr5	90907559	90907759	+	885.805542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3760.0	NM_009140	20310.0	Mm.4979	NM_009140	ENSMUSG00000058427	Cxcl2	CINC-2a|GROb|Gro2|MIP-2|MIP-2a|Mgsa-b|Mip2|Scyb|Scyb2	chemokine (C-X-C motif) ligand 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-47259708-3	chr19	47259533	47259733	+	817.305542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001164717)	TTS (NM_001164717)	13956.0	NR_105961	102466782.0		NR_105961	ENSMUSG00000098786	Mir6995	Gm27576|mmu-mir-6995	microRNA 6995	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-95885142-3	chr15	95885071	95885271	+	593.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 2 of 19)	intron (NM_175344, intron 2 of 19)	-55099.0	NR_155276	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-113157295-1	chr12	113157195	113157395	+	689.0	f1_c57bl6.idr	exon (NM_134041, exon 3 of 8)	exon (NM_134041, exon 3 of 8)	874.0	NM_134041	104732.0	Mm.87616	NM_134041	ENSMUSG00000037466	Tedc1	4930427A07Rik|AA536649|mFLJ00116	tubulin epsilon and delta complex 1	protein-coding	1.1103021673018	1.77740806612657	0.812011962301908	1.31296835872156	1.87354869150165	1.06524068577484	1.36656794620535	0.802321488048284	0.166631915675506	0.902215201734553	0.998431161219273
Merged-chr17-71082122-4	chr17	71082062	71082262	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083934, intron 17 of 36)	intron (NM_001083934, intron 17 of 36)	62605.0	NM_001083934	17929.0	Mm.4103	NM_010867	ENSMUSG00000024049	Myom1	D430047A17Rik	myomesin 1	protein-coding	6.75756850993059	5.97322625165126	6.22097598241483	6.62355024714376	6.76025878990462	5.93465086758838	5.35596239677604	6.30692546290038	-0.263212574348194	0.353441047046045	0.853132398390271
Merged-chr2-159911866-2	chr2	159911770	159911970	+	934.583374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35471.0	NR_040498	71081.0	Mm.383491	NR_040498	ENSMUSG00000085198	4933416E03Rik	-	RIKEN cDNA 4933416E03 gene	ncRNA	-0.859082918983678	-0.988263333422384	-1.00040322824838	-1.00311683473178	-1.00626376281094	-0.985632567570811	-0.997655022158689	-0.350334081862082	2.02436496650785	0.517018710074872	1
Merged-chr11-47199262-4	chr11	47199156	47199356	+	869.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011891, intron 2 of 7)	intron (NM_011891, intron 2 of 7)	180046.0	NM_011891	24052.0	Mm.338890	NM_011891	ENSMUSG00000020354	Sgcd	35kDa|delta-SG	sarcoglycan, delta (dystrophin-associated glycoprotein)	protein-coding	-0.914587585352826	-1.14968844836017	-1.16012564310979	-1.16869906563582	-0.801023986531728	-1.14742666471813	-1.15776289099527	-1.16716442710272	0.46649237519341	0.890119923761052	1
Merged-chr14-56809483-1	chr14	56809383	56809583	+	540.0	f1_c57bl6.idr	intron (NR_136882, intron 1 of 6)	intron (NR_136882, intron 1 of 6)	1981.0	NM_001253753	219105.0	Mm.473172	NM_144842	ENSMUSG00000040123	Zmym5	9830124H08Rik	zinc finger, MYM-type 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-149102349-1	chr3	149102249	149102449	+	729.0	f0_balb.idr	Intergenic	Intergenic	-147714.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	-0.390004868062895	-0.377613040512751	-0.381679492606139	-0.222074787681138	-0.010956764858455	-0.376695505741101	0.29402537629296	-0.384265396217015	2.71939650826378	0.276676687085504	1
Merged-chr7-63903194-2	chr7	63903094	63903294	+	736.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_021366, intron 1 of 1)	intron (NM_021366, intron 1 of 1)	-13663.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-64275806-4	chr13	64275672	64275872	+	954.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172587)	promoter-TSS (NM_172587)	-784.0	NM_172587	218294.0	Mm.25335	NM_172587	ENSMUSG00000033102	Cdc14b	2810432N10Rik|A530086E13Rik|AA472821|CDC14B3|Cdc14B1	CDC14 cell division cycle 14B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-74836833-2	chr11	74836733	74836933	+	918.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_010813, exon 2 of 6)	exon (NM_010813, exon 2 of 6)	5909.0	NM_010813	17428.0	Mm.3759	NM_010813	ENSMUSG00000000282	Mnt	Rox|bHLHd3	max binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-64698957-2	chr14	64698857	64699057	+	893.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081177, intron 2 of 39)	intron (NM_001081177, intron 2 of 39)	46426.0	NM_001081177	16554.0	Mm.23611	NM_001081177	ENSMUSG00000060012	Kif13b	5330429L19Rik|6030414C01|AI429803|C130021D12Rik|GAKIN	kinesin family member 13B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-156196272-2	chr4	156196172	156196372	+	581.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021604, intron 1 of 35)	intron (NM_021604, intron 1 of 35)	1216.0	NM_021604	11603.0	Mm.273098	NM_021604	ENSMUSG00000041936	Agrn	Agrin|nmf380	agrin	protein-coding	-0.294083384950798	-0.277963382818132	0.430175288204581	-0.287290034214969	-0.293070061983337	-0.276782190008417	0.44311158986884	-0.286577643912737	0.0410571026119648	0.987250810110592	1
Merged-chr16-10979591-4	chr16	10979501	10979701	+	913.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019980, intron 1 of 3)	MLT-int|LTR|ERVL-MaLR	13520.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-111149504-2	chr9	111149404	111149604	+	589.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_027742, intron 3 of 13)	intron (NM_027742, intron 3 of 13)	31393.0	NM_001164838	71268.0	Mm.302287	NM_027742	ENSMUSG00000032497	Lrrfip2	5133400F20Rik|AI850587	leucine rich repeat (in FLII) interacting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-57657061-4	chr18	57656969	57657169	+	970.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311063, intron 5 of 5)	MTD|LTR|ERVL-MaLR	-18484.0	NR_045360	70157.0	Mm.490532	NR_045360		2210409D07Rik	-	RIKEN cDNA 2210409D07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-97136624-4	chr7	97136533	97136733	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162477, intron 1 of 9)	intron (NM_001162477, intron 1 of 9)	54882.0	NM_010248	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	5.46878466903295	5.66976031966504	4.97260626672679	5.06097201191337	5.5055654398457	4.74881098203546	4.48856378338048	4.23430207515525	-0.562637565165369	0.122132642671359	0.547588731977191
Merged-chr16-91398277-4	chr16	91398167	91398367	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347258, intron 7 of 7)	intron (NM_001347258, intron 7 of 7)	-7968.0	NM_008349	16155.0	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-61344181-4	chr10	61344041	61344241	+	685.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013753, exon 11 of 20)	exon (NM_013753, exon 11 of 20)	39382.0	NM_013753	27355.0	Mm.269699	NM_013753	ENSMUSG00000020092	Pald1	MMPAL|Pald|mKIAA1274	phosphatase domain containing, paladin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-32944095-2	chr19	32943995	32944195	+	591.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	186518.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-119360053-3	chr2	119359941	119360141	+	727.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8799.0	NM_026929	69065.0	Mm.35083	NM_026929	ENSMUSG00000027313	Chac1	1810008K03Rik	ChaC, cation transport regulator 1	protein-coding	1.23809169440963	2.32871212119244	1.94099417534577	2.17700393516267	1.41465363928917	1.74805651660541	1.09310004769735	1.77319559212558	-1.33164652559657	0.227025724044015	0.71997232966636
Merged-chr2-34799826-4	chr2	34799698	34799898	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_145522, exon 1 of 8)	5' UTR (NM_145522, exon 1 of 8)	114.0	NM_145522	227746.0	Mm.158705	NM_145522	ENSMUSG00000070953	Rabepk	8430412M01Rik|9530020D24Rik|AV073337|C87311|Rab9p40	Rab9 effector protein with kelch motifs	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-120882546-4	chr10	120882451	120882651	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177092, intron 1 of 6)	intron (NM_177092, intron 1 of 6)	16420.0	NM_177092	320183.0	Mm.169755	NM_177092	ENSMUSG00000051236	Msrb3	D430026P16Rik|I-8-23|MsrB2	methionine sulfoxide reductase B3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-94433640-4	chr9	94433533	94433733	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	104448.0	NM_001033145	68861.0	Mm.258746	NM_001033145	ENSMUSG00000045414	1190002N15Rik	GoPro49|HASF	RIKEN cDNA 1190002N15 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-137948317-4	chr3	137948181	137948381	+	908.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011932, intron 4 of 8)	B4A|SINE|B4	29726.0	NM_019920	56692.0	Mm.331392	NM_019920	ENSMUSG00000091512	Lamtor3	AW556229|Map2k1ip1|Mapbp|Mapksp1|Mp1	late endosomal/lysosomal adaptor, MAPK and MTOR activator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89863876-4	chr3	89863786	89863986	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32516.0	NM_172530	214547.0	Mm.225	NM_172530	ENSMUSG00000046280	She	9430022A14	src homology 2 domain-containing transforming protein E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-96209471-2	chr5	96209371	96209571	+	935.7999880000001	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053158)	promoter-TSS (NM_053158)	-644.0	NM_001039084	94061.0	Mm.295499	NM_053158	ENSMUSG00000029486	Mrpl1	2410002L03Rik|5830418D04Rik|AI462572|L1mt	mitochondrial ribosomal protein L1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90547509-4	chr2	90547402	90547602	+	790.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	33145.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-31349877-1	chr13	31349777	31349977	+	553.0	f1_balb.idr	Intergenic	Intergenic	-108791.0	NR_045957	73924.0	Mm.417825	NR_045957	ENSMUSG00000087460	4930401O12Rik	-	RIKEN cDNA 4930401O12 gene	ncRNA	1.16245658851557	2.29009827677684	2.09672964167961	2.24648566240412	2.05201922089578	1.2531164019942	2.11350546335329	2.35006197050834	-0.044810234446466	0.96654055397713	0.998431161219273
Merged-chr1-119534604-1	chr1	119534504	119534704	+	559.0	f0_balb.idr	intron (NR_126486, intron 3 of 3)	MTD|LTR|ERVL-MaLR	1561.0	NR_126486	320069.0	Mm.406320	NR_126486	ENSMUSG00000101731	3830432H09Rik	-	RIKEN cDNA 3830432H09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-23813578-4	chr18	23813492	23813692	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153058, intron 1 of 6)	L1ME1|LINE|L1	9622.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	1.00053370696968	0.794781873932412	2.11781917091755	0.920200432328849	0.493422436914117	0.541967462362749	1.13261638513754	0.513228766703256	-2.67554210020314	0.0867550350188204	0.452690740862195
Merged-chr7-19405601-4	chr7	19405506	19405706	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-1502.0	NM_001286039	232943.0	Mm.213403	NM_146182	ENSMUSG00000040714	Klc3	BC017147|Klct	kinesin light chain 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-5110582-4	chr6	5110482	5110682	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181595, intron 7 of 15)	intron (NM_181595, intron 7 of 15)	83364.0	NM_011134	18979.0	Mm.237657	NM_011134	ENSMUSG00000002588	Pon1	Pon	paraoxonase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133310185-1	chr4	133310085	133310285	+	540.0	f1_c57bl6.idr	intron (NM_199306, intron 5 of 15)	intron (NM_199306, intron 5 of 15)	29130.0	NM_199306	230796.0	Mm.226576	NM_199306	ENSMUSG00000037622	Wdtc1	Gm695|adipose|adp	WD and tetratricopeptide repeats 1	protein-coding	-2.18292257394068	-2.15545247547656	-2.03304972317742	-2.17058342868585	-2.18099422382073	-2.1536522739386	-2.16187909550322	-2.16936197735154	-0.683654500252594	0.846597994014493	1
Merged-chr9-37656155-1	chr9	37656055	37656255	+	646.0	f0_balb.idr	intron (NM_025289, intron 1 of 8)	intron (NM_025289, intron 1 of 8)	1157.0	NM_025289	21376.0	Mm.28689	NM_025289	ENSMUSG00000011114	Tbrg1	AA408552|AA409675|Niam|Tb-5|mFLJ00213	transforming growth factor beta regulated gene 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-72326127-2	chr16	72325988	72326188	+	629.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-91761.0	NR_131115	319533.0	Mm.373754	NR_131115		8030451O07Rik	-	RIKEN cDNA 8030451O07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102380788-2	chr12	102380688	102380888	+	661.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177620, intron 7 of 9)	MTE2a|LTR|ERVL-MaLR	59025.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-3504901-2	chr5	3504801	3505001	+	889.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 5 of 7)	intron (NM_009873, intron 5 of 7)	-38932.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35968642-2	chr17	35968542	35968742	+	767.799988	f1_balb.idr|f1_c57bl6.idr	intron (NM_013854, intron 1 of 22)	B1_Mus1|SINE|Alu	1108.0	NM_013854	224742.0	Mm.329022	NM_013854	ENSMUSG00000038762	Abcf1	AU041969|Abc50|D17Wsu166e|GCN20	ATP-binding cassette, sub-family F (GCN20), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-45654874-4	chr2	45654771	45654971	+	882.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-41734.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-3566883-2	chr17	3566783	3566983	+	583.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13D1|LTR|ERVK	9059.0	NR_045302	68230.0	Mm.431352	NR_045302		1700102H20Rik	-	RIKEN cDNA 1700102H20 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-127144518-2	chr6	127144418	127144618	+	630.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009829, intron 3 of 4)	intron (NM_009829, intron 3 of 4)	-4871.0	NR_040274	77558.0	Mm.358918	NR_040273	ENSMUSG00000097166	9330179D12Rik	-	RIKEN cDNA 9330179D12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-29912905-3	chr6	29912786	29912986	+	919.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_021414)	TTS (NM_021414)	-4127.0	NM_177204	320609.0	Mm.56097	NM_177204	ENSMUSG00000039629	Strip2	D330017J20Rik|Fam40b	striatin interacting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-32407483-4	chr18	32407330	32407530	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360876, intron 2 of 17)	intron (NM_001360876, intron 2 of 17)	-29146.0	NR_045403	402767.0	Mm.385109	NR_045403	ENSMUSG00000097413	A830052D11Rik	-	RIKEN cDNA A830052D11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-102306853-2	chr11	102306753	102306953	+	850.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001044383, intron 19 of 19)	intron (NM_001044383, intron 19 of 19)	-10224.0	NM_001098837	217218.0	Mm.390381	NM_001098836	ENSMUSG00000059995	Atxn7l3	E030022H21Rik	ataxin 7-like 3	protein-coding	1.0992938206131	1.76587119951281	0.941417610899861	2.30090536029259	1.10738419658245	1.78069295979032	0.946247754419453	2.31382731259756	0.0324083438964151	0.979691699046252	0.998431161219273
Merged-chr6-135400533-2	chr6	135400479	135400679	+	756.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	33086.0	NM_001288627	13730.0	Mm.182785	NM_010128	ENSMUSG00000030208	Emp1	I-8-09|TMP	epithelial membrane protein 1	protein-coding	1.44532936818567	1.81951743054586	1.29619951069262	2.27474834965672	2.60037602521865	2.66001883454678	2.47021934551996	2.57639981965134	1.98583320720871	0.0327993563837895	0.252909176023591
Merged-chr5-105749297-3	chr5	105749215	105749415	+	737.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122768, intron 2 of 2)	intron (NM_001122768, intron 2 of 2)	48505.0	NM_178701	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-37495474-4	chr19	37495329	37495529	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30175.0	NR_131009	78640.0	Mm.234265	NR_131008		1700122C19Rik	-	RIKEN cDNA 1700122C19 gene	ncRNA	3.19134480951343	3.04827913258354	4.43357574110477	3.91012996109786	3.21890178448117	2.76994993769536	4.15180692997095	2.98793620403578	-0.546458847276069	0.370645002031436	0.863727598865104
Merged-chr6-86922063-2	chr6	86921963	86922163	+	710.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001040106, intron 1 of 20)	intron (NM_001040106, intron 1 of 20)	72546.0	NM_001040106	269774.0	Mm.221038	NM_177762	ENSMUSG00000057230	Aak1	5530400K14Rik|9630042K20|AU067724|AU067726|BC028270|C79663|D6Ertd245e|R75501|mKIAA1048	AP2 associated kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-4513416-4	chr7	4513290	4513490	+	878.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360154, intron 4 of 12)	intron (NM_001360154, intron 4 of 12)	2585.0	NM_001277903	21955.0	Mm.358643	NM_011618	ENSMUSG00000064179	Tnnt1	AW146156|Tnt|sTnT|ssTnT	troponin T1, skeletal, slow	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45712022-2	chr7	45711922	45712122	+	825.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_020011, intron 5 of 5)	intron (NM_020011, intron 5 of 5)	3185.0	NM_020011	56632.0	Mm.24222	NM_020011	ENSMUSG00000057342	Sphk2	C76851	sphingosine kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-91308101-3	chr5	91307995	91308195	+	798.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25019.0	NR_040428	100503265.0	Mm.125059	NR_040428	ENSMUSG00000107198	Gm19619	-	predicted gene, 19619	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10295377-4	chr19	10295260	10295460	+	868.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198114, intron 1 of 19)	intron (NM_198114, intron 1 of 19)	9517.0	NM_198114	269060.0	Mm.329718	NM_198114	ENSMUSG00000035735	Dagla	Nsddr	diacylglycerol lipase, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-63077951-2	chr14	63077851	63078051	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	22878.0	NR_046019	72609.0	Mm.387101	NR_046019		2700070H01Rik	-	RIKEN cDNA 2700070H01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-156087575-4	chr4	156087482	156087682	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22416.0	NM_145557	230996.0	Mm.318925	NM_145557	ENSMUSG00000059939	9430015G10Rik	-	RIKEN cDNA 9430015G10 gene	protein-coding	0.551226248533929	1.43024182222108	0.577764648967288	1.20340187377016	0.887793310546225	1.65379516648226	0.580552431050884	0.773020113055939	0.194026340351003	0.901743271548985	0.998431161219273
Merged-chr16-48865196-4	chr16	48865074	48865274	+	954.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7434.0	NM_181596	245195.0	Mm.231288	NM_181596	ENSMUSG00000022651	Retnlg	Fizz3|Relmg|Xcp1	resistin like gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78931786-4	chr15	78931681	78931881	+	968.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3152.0	NM_133800	97961.0	Mm.157216	NM_133800	ENSMUSG00000033099	Nol12	C78541|Nop25	nucleolar protein 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-92484743-4	chr2	92484644	92484844	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24226.0	NM_145832	228368.0	Mm.273990	NM_145832	ENSMUSG00000049922	Slc35c1	E430007K15Rik|fuct1	solute carrier family 35, member C1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91741124-3	chr16	91741049	91741249	+	650.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110276, intron 1 of 15)	intron (NM_001110276, intron 1 of 15)	11778.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-3320502-2	chr8	3320402	3320602	+	614.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CAAAA)n|Simple_repeat|Simple_repeat	-32913.0	NM_001033378	319493.0	Mm.234565	NM_001033378	ENSMUSG00000074497	A430078G23Rik	-	RIKEN cDNA A430078G23 gene	protein-coding	-0.0977016715383615	-0.00399608531927825	-0.330966865275282	-0.333626488413278	-0.0917596259492191	0.00282314113223398	-0.330203791666453	-0.333162944106642	0.040353244391314	0.986363013599206	1
Merged-chr14-70403163-3	chr14	70403057	70403257	+	691.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021308, intron 10 of 22)	intron (NM_021308, intron 10 of 22)	25937.0	NM_021308	57746.0	Mm.85253	NM_021308	ENSMUSG00000033644	Piwil2	Piwil1l|mili	piwi-like RNA-mediated gene silencing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6920466-2	chr19	6920366	6920566	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007953, intron 1 of 6)	intron (NM_007953, intron 1 of 6)	1342.0	NM_007953	26379.0	Mm.386776	NM_007953	ENSMUSG00000024955	Esrra	ERRalpha|Err1|Estrra|Nr3b1	estrogen related receptor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-18646608-2	chr19	18646509	18646709	+	888.166626	f0_balb.idr|f1_c57bl6.idr	intron (NM_145497, intron 8 of 8)	B3A|SINE|B2	14593.0	NM_145497	225994.0	Mm.211595	NM_145497	ENSMUSG00000037847	Nmrk1	AA408380|D630020N23Rik|Nrk1	nicotinamide riboside kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-19979987-4	chr16	19979902	19980102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183390, intron 1 of 6)	intron (NM_183390, intron 1 of 6)	3047.0	NM_183390	239743.0	Mm.86699	NM_183390	ENSMUSG00000043008	Klhl6	-	kelch-like 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-91779233-1	chr17	91779133	91779333	+	563.0	f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	-686431.0	NM_020252	18189.0	Mm.478418	NM_020252	ENSMUSG00000024109	Nrxn1	1700062G21Rik|9330127H16Rik|A230068P09Rik|mKIAA0578	neurexin I	protein-coding	1.77302857024555	0.543122377990202	0.53033283556142	1.38374577103531	1.20599646940854	0.545969683146075	0.756640507116315	0.522047985859884	-1.59791334272631	0.339657884094483	0.8404816361953
Merged-chr5-92487451-4	chr5	92487356	92487556	+	969.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007644, intron 1 of 11)	intron (NM_007644, intron 1 of 11)	18201.0	NM_007644	12492.0	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-93073506-2	chr1	93073406	93073606	+	665.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001294150, intron 7 of 46)	intron (NM_001294150, intron 7 of 46)	8974.0	NM_001294150	16560.0	Mm.276408	NM_008440	ENSMUSG00000014602	Kif1a	ATSV|C630002N23Rik|Gm1626|Kns1	kinesin family member 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-62643520-4	chr2	62643415	62643615	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164477, intron 1 of 14)	intron (NM_001164477, intron 1 of 14)	2740.0	NM_027835	71586.0	Mm.136224	NM_027835	ENSMUSG00000026896	Ifih1	9130009C22Rik|Helicard|Hlcd|MDA5|RLR-2	interferon induced with helicase C domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-81149343-4	chr3	81149243	81149443	+	995.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357746, intron 3 of 6)	intron (NM_001357746, intron 3 of 6)	112927.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	3.0486827961447	3.53175036578314	3.93179444691903	2.88637574319671	3.16724298934188	3.64870811994882	4.13077623254487	4.16112107926167	0.631732336549802	0.253864488865155	0.751694505775946
Merged-chr1-75254447-4	chr1	75254343	75254543	+	945.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359281, intron 12 of 22)	intron (NM_001359281, intron 12 of 22)	9328.0	NM_001359281	19275.0	Mm.2902	NM_008985	ENSMUSG00000026204	Ptprn	IA-2|mIA-A|mKIAA4064	protein tyrosine phosphatase, receptor type, N	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-160647767-4	chr2	160647743	160647943	+	849.5089109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009408, intron 2 of 20)	intron (NM_009408, intron 2 of 20)	1946.0	NM_009408	21969.0	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-96294743-3	chr11	96294617	96294817	+	768.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131758, intron 1 of 2)	intron (NR_131758, intron 1 of 2)	-4357.0	NM_008269	15414.0	Mm.215	NM_008269	ENSMUSG00000000690	Hoxb6	Hox-2.2	homeobox B6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-12457547-4	chr19	12457435	12457635	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3244.0	NM_010821	17476.0	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-79841800-2	chr3	79841662	79841862	+	884.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027495, intron 1 of 11)	intron (NM_027495, intron 1 of 11)	900.0	NM_027495	70652.0	Mm.46635	NM_027495	ENSMUSG00000027956	Tmem144	1110057I03Rik|5730537D05Rik	transmembrane protein 144	protein-coding	1.49508452478583	2.22703998272097	2.34278713013282	1.56657925216452	2.17269977029347	1.84475272686621	2.05387789664061	1.1647619311431	-0.261281924387808	0.803639193257661	0.998431161219273
Merged-chr18-12188823-4	chr18	12188711	12188911	+	987.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008720)	TTS (NM_008720)	20081.0	NM_029623	76482.0	Mm.196596	NM_029623	ENSMUSG00000024410	3110002H16Rik	2400010D15Rik|Mic-1|Mic1|Rmc1|Wdr98	RIKEN cDNA 3110002H16 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-72334271-3	chr12	72334158	72334358	+	658.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153457, intron 1 of 8)	intron (NM_153457, intron 1 of 8)	74796.0	NM_001286448	104001.0	Mm.221275	NM_153457	ENSMUSG00000021087	Rtn1	Nsp	reticulon 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56272680-2	chr17	56272580	56272780	+	705.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_174989, intron 1 of 1)	intron (NM_174989, intron 1 of 1)	4087.0	NM_174989	106759.0	Mm.203952	NM_174989	ENSMUSG00000047123	Ticam1	AW046014|AW547018|TICAM-1|TRIF	toll-like receptor adaptor molecule 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-66277898-4	chr9	66277787	66277987	+	882.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72563.0	NM_145617	235439.0	Mm.244179	NM_145617	ENSMUSG00000038664	Herc1	2810449H11Rik|B230218H07|D130015N03Rik|tbl	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115731476-3	chr5	115731378	115731578	+	873.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001080808, exon 1 of 9)	exon (NM_001080808, exon 1 of 9)	143.0	NM_001080808	75665.0	Mm.233914	NM_001080808	ENSMUSG00000041609	Bicdl1	2210403N09Rik|BICDR-1|Ccdc64	BICD family like cargo adaptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-60760952-2	chr13	60760891	60761091	+	602.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001285917, exon 26 of 27)	exon (NM_001285917, exon 26 of 27)	25373.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	0.425135034043777	1.67765242244454	0.45456029076137	0.443693552983816	0.791318662589541	1.6005403475904	0.4576263189767	0.848483000150111	0.37094756482122	0.826242759012788	0.998431161219273
Merged-chr9-108608180-4	chr9	108608157	108608357	+	997.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151664, intron 12 of 15)	B1_Mus1|SINE|Alu	-10645.0	NR_151688	74443.0	Mm.226534	NM_028944	ENSMUSG00000006675	P4htm	4933406E20Rik|AI853847|BB128974|HIF-PH4|HPH-4|P4H-TM|Ph-4	prolyl 4-hydroxylase, transmembrane (endoplasmic reticulum)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-64184486-1	chr13	64184386	64184586	+	540.0	f1_balb.idr	intron (NM_019986, intron 6 of 7)	intron (NM_019986, intron 6 of 7)	22620.0	NM_019986	56541.0	Mm.40989	NM_019986	ENSMUSG00000021476	Habp4	4933413D03Rik|4933428J01Rik	hyaluronic acid binding protein 4	protein-coding	1.3228584235923	1.26777073907684	0.658578274859263	0.647380584771772	1.52016219354936	0.67596735126064	0.661742941773636	1.85774646011387	1.04119531686961	0.511144504746113	0.94512318675548
Merged-chr17-26231572-2	chr17	26231497	26231697	+	688.0	f0_balb.idr|f1_balb.idr	intron (NM_001206335, intron 1 of 12)	B4A|SINE|B4	12645.0	NM_207217	106581.0	Mm.28844	NM_207217	ENSMUSG00000024187	Fam234a	Itfg3	family with sequence similarity 234, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-110266928-2	chr8	110266828	110267028	+	967.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172916)	promoter-TSS (NM_172916)	-49.0	NM_172916	244653.0	Mm.444803	NM_172916	ENSMUSG00000059854	Hydin	1700034M11Rik|4930545D19Rik|4932703P14|672398|A830061H17|AC069308.21gm4|Gm9558|hy-3|hy3|hyrh	HYDIN, axonemal central pair apparatus protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-94268568-3	chr2	94268477	94268677	+	932.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	-7178.0	NR_030431	735259.0		NR_030431	ENSMUSG00000076335	Mir670	Mirn670|mir-670|mmu-mir-670	microRNA 670	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-87265960-4	chr17	87265869	87266069	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_139295)	promoter-TSS (NM_139295)	-22.0	NM_139295	193813.0	Mm.30251	NM_139295	ENSMUSG00000024150	Mcfd2	1810021C21Rik|F5f8d|Lman1ip|Sdnsf	multiple coagulation factor deficiency 2	protein-coding	5.77367252235243	5.35523569248951	5.61984684479646	5.74598817009593	5.58359231785887	4.76688186629953	6.17178939202457	5.65811305766187	-0.00227177828114644	0.99400669648001	0.998431161219273
Merged-chr7-44405066-2	chr7	44404966	44405166	+	850.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	20940.0	NM_016663	20981.0	Mm.4824	NM_016663	ENSMUSG00000030731	Syt3	AI385753|sytIII	synaptotagmin III	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134065283-4	chr6	134065185	134065385	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007961, intron 1 of 7)	intron (NM_007961, intron 1 of 7)	29585.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-50576217-4	chr17	50576113	50576313	+	968.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013880, intron 1 of 5)	intron (NM_013880, intron 1 of 5)	66666.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	5.28074889376174	3.18036222389396	4.65692783253789	4.33266152554963	5.44305116288491	4.68839287719285	4.37293262504723	5.41836391909094	0.598950460704161	0.184884457181583	0.660415655093519
Merged-chr4-9115568-2	chr4	9115468	9115668	+	860.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-153725.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-57441238-4	chr16	57441150	57441350	+	927.9249880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	87973.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102455089-2	chr12	102454986	102455186	+	709.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER5|LTR|ERV1	-14048.0	NM_001199004	27277.0	Mm.273370	NM_013747	ENSMUSG00000021192	Golga5	Ret-II	golgi autoantigen, golgin subfamily a, 5	protein-coding	-0.597620248427539	-0.728682509734628	-0.731838962510419	-0.734268429631426	-0.0967157111166925	-0.727969843754112	-0.7311435101234	-0.569543444301053	2.31304228940005	0.398917242216194	1
Merged-chr3-109353207-1	chr3	109353107	109353307	+	605.0	f0_balb.idr	intron (NM_020505, intron 1 of 26)	intron (NM_020505, intron 1 of 26)	12524.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	0.290781711239669	0.238762408517738	0.218696583187589	0.544716263365575	0.491057708238648	0.0621253336357731	0.0574159537340436	0.0534186153881038	-1.15433092303971	0.562794420241516	1
Merged-chr10-75950904-2	chr10	75950804	75951004	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	2604.0	NM_001358532	22364.0	Mm.333851	NM_009514	ENSMUSG00000000903	Vpreb3	8HS-20|AI528709|Vpreb-3	pre-B lymphocyte gene 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-120910519-2	chr14	120910427	120910627	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_023579)	promoter-TSS (NM_023579)	-667.0	NM_023579	70572.0	Mm.221452	NM_023579	ENSMUSG00000030662	Ipo5	1110011C18Rik|5730478E03Rik|AA409333|C76941|IMB3|Kpnb3|Ranbp5|imp5	importin 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-4595278-4	chr12	4595201	4595401	+	900.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198969, intron 1 of 16)	intron (NM_001198969, intron 1 of 16)	2293.0	NM_001198968	20403.0	Mm.341204	NM_011365	ENSMUSG00000020640	Itsn2	AI327390|Ese2|Sh3d1B|Sh3p18|mKIAA1256	intersectin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-122087750-4	chr7	122087648	122087848	+	986.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028177, exon 5 of 5)	3' UTR (NM_028177, exon 5 of 5)	14100.0	NR_153798	70316.0	Mm.3014	NM_028177	ENSMUSG00000030869	Ndufab1	2210401F17Rik|2310039H15Rik|2610003B19Rik|8kDa|9130423F15Rik|ACP|CI-SDAP|SDAP	NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150117509-3	chr4	150117415	150117615	+	921.744446	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1829.0	NM_019741	56485.0	Mm.260220	NM_019741	ENSMUSG00000028976	Slc2a5	AI526984|Glut5|Slc5a	solute carrier family 2 (facilitated glucose transporter), member 5	protein-coding	5.33617231267481	4.6272206641564	5.38493319212049	5.21094792174302	1.36009228133751	1.66368542417112	1.57381085342278	3.18775802154449	-4.44434950952329	0.00122813894946539	0.0229044732368172
Merged-chr5-64503666-4	chr5	64503565	64503765	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	26657.0	NR_045413	77382.0	Mm.366742	NR_045411	ENSMUSG00000105352	C030018K13Rik	-	RIKEN cDNA C030018K13 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-9115261-2	chr4	9115161	9115361	+	978.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-154032.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-111596004-4	chr8	111595900	111596100	+	915.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168623, intron 1 of 4)	intron (NM_001168623, intron 1 of 4)	34322.0	NM_027570	52815.0	Mm.27589	NM_027570	ENSMUSG00000031958	Ldhd	4733401P21Rik|D8Bwg1320e	lactate dehydrogenase D	protein-coding	2.24152159545355	2.08966231707101	3.05286015656885	1.57617675640238	2.36448977065004	2.41600950465454	3.07663090344475	1.58371705977039	0.225476863544946	0.80356724277296	0.998431161219273
Merged-chr19-44389783-3	chr19	44389685	44389885	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17924.0	NM_009127	20249.0	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	-1.84354474832578	-1.81325489144778	-1.53416061964661	-1.82993901100912	-1.8414184563789	-1.81126990231468	-1.82034119297928	-1.82859217979378	-1.52252619601533	0.665276690233728	1
Merged-chr4-128730648-2	chr4	128730548	128730748	+	744.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001195083, intron 1 of 6)	intron (NM_001195083, intron 1 of 6)	3077.0	NM_001195083	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	0.799378490718581	0.629239477973611	0.416145985598308	0.861060191979603	0.808701247783834	1.29631853565476	0.417997371546663	0.410784990174603	0.574076772340778	0.735651320607784	1
Merged-chr12-40485463-1	chr12	40485363	40485563	+	699.0	f0_balb.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	39410.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-8890695-3	chr10	8890589	8890789	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4619.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	1.18104534664118	1.30575514309724	2.38090966655794	2.98569511325535	2.65181228997887	2.60706745224363	1.55280702128161	2.86606603789557	0.624835316225588	0.546587077108534	0.957458402445229
Merged-chr8-57800024-4	chr8	57799921	57800121	+	994.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175032, intron 10 of 11)	intron (NM_175032, intron 10 of 11)	-146966.0	NM_144731	108150.0	Mm.62886	NM_144731	ENSMUSG00000031608	Galnt7	AI225872	polypeptide N-acetylgalactosaminyltransferase 7	protein-coding	4.46416186202952	3.73600431952469	4.33278908114453	4.63899818605358	3.05759020840587	3.06567015038407	4.20314220012371	3.96247695513489	-0.912019218680548	0.0655331305668934	0.383349181729712
Merged-chr7-80789263-4	chr7	80789162	80789362	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016721, intron 2 of 37)	intron (NM_016721, intron 2 of 37)	14069.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46881478-4	chr8	46881389	46881589	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-105398.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-58558657-2	chr18	58558557	58558757	+	571.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081072, intron 1 of 9)	intron (NM_001081072, intron 1 of 9)	2417.0	NM_001081072	225579.0	Mm.258517	NM_001081072	ENSMUSG00000024600	Slc27a6	4732438L20Rik|FACVL2|FATP6|VLCS-H1	solute carrier family 27 (fatty acid transporter), member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-84598147-4	chr3	84598043	84598243	+	980.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4569.0	NM_207278	403175.0	Mm.83086	NM_207278	ENSMUSG00000047819	Tigd4	C130063O11Rik|Gm418	tigger transposable element derived 4	protein-coding	2.45306851230738	2.48371342047471	1.27312706608515	2.85511605767313	1.89861193352553	1.79031340734491	1.90819168196873	1.85030981976438	-1.31610758228077	0.172336221723312	0.640342426440101
Merged-chr2-84511733-4	chr2	84511585	84511785	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28|LTR|ERVL	-4812.0	NR_046046	672763.0	Mm.491046	NR_046046	ENSMUSG00000087362	Gm13710	-	predicted gene 13710	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-105731757-4	chr5	105731657	105731857	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178701, intron 1 of 2)	intron (NM_178701, intron 1 of 2)	30947.0	NM_178701	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167942475-3	chr2	167942405	167942605	+	796.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011201, intron 1 of 8)	intron (NM_011201, intron 1 of 8)	10178.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-149085026-3	chr3	149084927	149085127	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-130392.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	2.77404182578239	2.90082753402321	3.00077208826444	2.21316444026281	3.0921186475754	3.02706450929858	2.82702093465818	2.51200909419777	0.249087647568317	0.718624954494972	0.998431161219273
Merged-chr7-48998254-7	chr7	48998121	48998321	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111016, intron 2 of 38)	intron (NM_001111016, intron 2 of 38)	39148.0	NM_001111016	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-155991748-2	chr4	155991648	155991848	+	890.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_080445, exon 1 of 1)	exon (NM_080445, exon 1 of 1)	930.0	NM_080445	117592.0	Mm.440185	NM_080445	ENSMUSG00000050796	B3galt6	BB129894|GalTII	UDP-Gal:betaGal beta 1,3-galactosyltransferase, polypeptide 6	protein-coding	1.77567956567531	2.23187824392137	2.25484781353949	1.73453673350988	1.78985016711569	2.24880429035962	1.20761945852359	1.74295543247524	-0.607644907333864	0.550423962740993	0.958882219733107
Merged-chr19-45660452-4	chr19	45660365	45660565	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013907)	promoter-TSS (NM_013907)	-272.0	NM_013907	30838.0	Mm.254739	NM_013907	ENSMUSG00000040913	Fbxw4	Dac|Fbw4|SHFM3|SHSF3|dactylin|dactylyn	F-box and WD-40 domain protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-62944922-2	chr10	62944822	62945022	+	626.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_175194, exon 9 of 9)	3' UTR (NM_175194, exon 9 of 9)	-2107.0	NR_152862	327762.0	Mm.21492	NM_177372	ENSMUSG00000036875	Dna2	Dna2l|E130315B21Rik	DNA replication helicase/nuclease 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-74947837-4	chr14	74947744	74947944	+	945.662476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252132)	promoter-TSS (NM_001252132)	33.0	NM_001252132	380916.0	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-96969285-3	chr11	96969210	96969410	+	802.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030220, intron 1 of 6)	intron (NM_030220, intron 1 of 6)	8378.0	NM_030220	78912.0	Mm.491183	NM_030220	ENSMUSG00000018678	Sp2	4930480I16Rik|mKIAA0048	Sp2 transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-17772658-4	chr10	17772563	17772763	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23556.0	NM_138628	378431.0	Mm.283493	NM_138628	ENSMUSG00000039891	Txlnb	2310001N14Rik|Mdp77	taxilin beta	protein-coding	5.41657985579036	5.21316302413566	5.57447568427894	5.54114173195781	5.11462711434412	4.85983176981299	5.36120192069712	3.51832039779484	-0.675278458614784	0.0665769226374046	0.386885656023691
Merged-chr12-112632490-3	chr12	112632393	112632593	+	930.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007421, intron 3 of 12)	intron (NM_007421, intron 3 of 12)	-12335.0	NM_001161737	30954.0	Mm.289812	NM_013929	ENSMUSG00000064326	Siva1	CD27bp|Siva	SIVA1, apoptosis-inducing factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-122048186-2	chr1	122048086	122048286	+	761.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-156959.0	NR_151524	102638832.0	Mm.112794	NR_151524	ENSMUSG00000099960	Gm28590	-	predicted gene 28590	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99055440-2	chr7	99055289	99055489	+	598.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 6 of 14)	intron (NM_178635, intron 6 of 14)	85755.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	-0.413270832553205	0.248879758316469	-0.403519686790488	-0.4071766335812	-0.41236239857827	0.260274020124072	-0.402476173372258	-0.406537021983025	0.0394809277679939	0.98817139586833	1
Merged-chr17-69222518-4	chr17	69222416	69222616	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355736, intron 3 of 21)	intron (NM_001355736, intron 3 of 21)	54690.0	NR_045428	69750.0	Mm.439063	NR_045428	ENSMUSG00000100572	2410021H03Rik	-	RIKEN cDNA 2410021H03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-49485401-4	chr9	49485297	49485497	+	928.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172770, intron 1 of 21)	intron (NM_172770, intron 1 of 21)	828.0	NM_172770	235330.0	Mm.177413	NM_172770	ENSMUSG00000040219	Ttc12	E330017O07Rik	tetratricopeptide repeat domain 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-71594682-3	chr2	71594584	71594784	+	858.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_039557, intron 2 of 3).2	intron (NR_039557, intron 2 of 3).2	-47930.0	NM_010054	13392.0	Mm.3896	NM_010054	ENSMUSG00000023391	Dlx2	AW121999|Dlx-2|Tes-1	distal-less homeobox 2	protein-coding	2.73596257873672	2.82959007730519	3.46794753266694	2.05450237074767	1.40080544998606	1.28133367032466	2.75040681501799	1.19962502001837	-2.11167593053049	0.032544158487363	0.25158815304857
Merged-chr11-103963583-2	chr11	103963483	103963683	+	728.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3142.0	NM_001304574	11841.0	Mm.5061	NM_007477	ENSMUSG00000062421	Arf2	-	ADP-ribosylation factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-73764644-2	chr13	73764544	73764744	+	952.599976	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360694, intron 1 of 24)	intron (NM_001360694, intron 1 of 24)	947.0	NM_011390	20499.0	Mm.275800	NM_011390	ENSMUSG00000017756	Slc12a7	AA408796|D13Ertd261e|Kcc4	solute carrier family 12, member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-9786808-4	chr3	9786698	9786898	+	948.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053182, intron 1 of 7)	intron (NM_053182, intron 1 of 7)	46881.0	NM_053182	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-27452140-2	chr7	27452133	27452333	+	822.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290525)	promoter-TSS (NM_001290525)	-185.0	NM_001290525	233016.0	Mm.24021	NM_144923	ENSMUSG00000040466	Blvrb	-	biliverdin reductase B (flavin reductase (NADPH))	protein-coding	0.7984067774158	1.33717488429635	0.855926281360703	0.65136895639688	1.3582216276319	1.34951260924577	1.16984519912536	0.652860238242421	1.02401740778681	0.487966300112931	0.933254995019385
Merged-chr13-98814169-4	chr13	98814074	98814274	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172591, intron 1 of 25)	L1MB7|LINE|L1	1275.0	NM_172591	218503.0	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-174029610-3	chr1	174029448	174029648	+	970.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172648, intron 1 of 6)	intron (NM_172648, intron 1 of 6)	2207.0	NM_172648	226695.0	Mm.425061	NM_172648	ENSMUSG00000054203	Ifi205	D3|D3cDNA|Ifi205a	interferon activated gene 205	protein-coding	2.29758897761188	1.7551363389583	2.23591188032721	2.17479345855823	2.99277433368919	2.46824436138481	2.38747023783776	2.87797023592579	1.28904512223343	0.10769736757574	0.513338286288941
Merged-chr18-36724765-3	chr18	36724623	36724823	+	835.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009841)	TTS (NM_009841)	2092.0	NM_009841	12475.0	Mm.3460	NM_009841	ENSMUSG00000051439	Cd14	-	CD14 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-129612824-4	chr3	129612696	129612896	+	926.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130450, intron 3 of 4)	intron (NM_130450, intron 3 of 4)	-80408.0	NR_153368	102639747.0	Mm.393257	NR_153368		Gm35986	-	predicted gene, 35986	ncRNA	2.06056164612048	1.20892506741749	1.99048730092022	1.40137985600542	2.35926537301169	1.2159538518507	2.73490653252216	2.8493596246405	1.70002104628623	0.105928887823422	0.507927874471082
Merged-chr3-9896587-3	chr3	9896538	9896738	+	910.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62959.0	NM_001195031	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	3.75121571071785	3.34286896959876	1.53047268135909	1.76611966803955	4.93650870179722	4.96506145859588	1.86257301530796	4.23036238258318	2.05620130978878	0.134405787783003	0.572194741247986
Merged-chr4-134286809-2	chr4	134286709	134286909	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146156, intron 1 of 2)	CpG	444.0	NM_001163794	230809.0	Mm.22778	NM_146156	ENSMUSG00000050890	Pdik1l	BC027088|stk35l2	PDLIM1 interacting kinase 1 like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-91034739-4	chr1	91034639	91034839	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111312, intron 1 of 12)	Lx7|LINE|L1	-18705.0	NM_001111311	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-80853824-4	chr12	80853700	80853900	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001242419, intron 3 of 6)	intron (NM_001242419, intron 3 of 6)	63268.0	NM_001242419	217684.0	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-106376065-2	chr4	106375965	106376165	+	879.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_183225, intron 24 of 67)	intron (NM_183225, intron 24 of 67)	59852.0	NM_183225	329908.0	Mm.234544	NM_183225	ENSMUSG00000028514	Usp24	2700066K03Rik|2810030C21Rik|AI414051|B130021E18|C79851	ubiquitin specific peptidase 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117307241-4	chr10	117307128	117307328	+	795.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14360.0	NM_013590	17110.0	Mm.177539	NM_013590	ENSMUSG00000069515	Lyz1	Lyz|Lyzf3|Lzp-s	lysozyme 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-128379832-2	chr6	128379732	128379932	+	781.333374	f1_balb.idr|f1_c57bl6.idr	exon (NM_027697, exon 2 of 3)	exon (NM_027697, exon 2 of 3)	4322.0	NM_027697	71149.0	Mm.483176	NM_027697	ENSMUSG00000079304	Tex52	4933413G19Rik	testis expressed 52	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31128399-4	chr14	31128311	31128511	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001308091, intron 1 of 1)	intron (NM_001308091, intron 1 of 1)	519.0	NM_001308466	66487.0	Mm.379116	NM_001308091	ENSMUSG00000058351	Smim4	2010107H07Rik|Gm41122	small integral membrane protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-94520744-2	chr15	94520644	94520844	+	677.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22763.0	NM_172437	78895.0	Mm.34344	NM_172437	ENSMUSG00000033356	Pus7l	3000003F02Rik	pseudouridylate synthase 7-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-156344962-3	chr2	156344845	156345045	+	774.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027585, intron 8 of 12)	intron (NM_027585, intron 8 of 12)	-32241.0	NM_020255	19018.0	Mm.389346	NM_020255	ENSMUSG00000046229	Scand1	2310003H23Rik|Leap1|PGC-2|Ppargc2	SCAN domain-containing 1	protein-coding	2.33475316570919	1.6756858221848	1.36720227378617	2.23928630298066	2.6859035403048	2.26254199752821	2.7477027588772	2.96153532283365	1.60997175283008	0.0676168520496323	0.390157257562434
Merged-chr12-102393316-2	chr12	102393216	102393416	+	895.2000119999999	f1_balb.idr|f1_c57bl6.idr	TTS (NM_011175)	TTS (NM_011175)	46497.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-54254021-4	chr14	54253921	54254121	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113358)	promoter-TSS (NM_001113358)	-92.0	NM_010015	13135.0	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	7.89881489093556	8.28859591177564	8.79816500705244	8.14146314611279	8.07558529588549	7.94778897048033	8.21567897445472	8.22084752330097	-0.203644038112632	0.217054016725953	0.707538695710375
Merged-chr4-9097182-4	chr4	9097076	9097276	+	945.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-172117.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153995915-2	chr2	153995815	153996015	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080811, intron 10 of 10)	intron (NM_001080811, intron 10 of 10)	-12361.0	NM_008953	19194.0	Mm.29197	NM_008953	ENSMUSG00000042459	Bpifa2	Bpifa2e|Psp	BPI fold containing family A, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-55728096-3	chr13	55727995	55728195	+	802.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028281, intron 1 of 3)	intron (NM_028281, intron 1 of 3)	727.0	NM_028281	72562.0	Mm.28145	NM_028281	ENSMUSG00000021496	Pcbd2	2700061N24Rik|Dcoh2|Dcohm	pterin 4 alpha carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 2	protein-coding	2.00437267091502	3.17881280113082	2.18215970801792	3.22602981672182	1.8746404635164	2.27910311149391	2.20004130964552	1.57897913693131	-1.64484773480743	0.0569354644407219	0.353025375902909
Merged-chr8-80242811-1	chr8	80242711	80242911	+	794.0	f0_balb.idr	Intergenic	Intergenic	-184803.0	NM_020259	15245.0	Mm.254493	NM_020259	ENSMUSG00000064325	Hhip	Hhip1	Hedgehog-interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114686312-2	chr11	114686212	114686412	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_053273, intron 1 of 13)	intron (NM_053273, intron 1 of 13)	10844.0	NM_053273	117160.0	Mm.271934	NM_053273	ENSMUSG00000034714	Ttyh2	1110001A03Rik	tweety family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-87593218-2	chr11	87593118	87593318	+	781.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133215, intron 1 of 18)	intron (NM_133215, intron 1 of 18)	1052.0	NM_133215	170749.0	Mm.399376	NM_133215	ENSMUSG00000018401	Mtmr4	AA596759|ESTM44|FYVE-DSP2|ZFYVE11|mKIAA0647	myotubularin related protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97439150-4	chr6	97439050	97439250	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	20136.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-128837685-4	chr6	128837567	128837767	+	868.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-11352.0	NM_030599	80782.0	Mm.6180	NM_030599	ENSMUSG00000079298	Klrb1b	Klrb1d|Ly55b|Ly55d|NKR-P1B|NKR-P1D|Nkrp1-b|Nkrp1b|Nkrp1d|ly-55b|ly-55d	killer cell lectin-like receptor subfamily B member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-58711691-5	chr1	58711604	58711804	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289704, intron 1 of 9)	CpG	213.0	NR_149256	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72437406-2	chr6	72437306	72437506	+	691.833374	f1_balb.idr|f1_c57bl6.idr	exon (NM_145569, exon 2 of 9)	exon (NM_145569, exon 2 of 9)	-1277.0	NR_046011	78108.0	Mm.440743	NR_046011	ENSMUSG00000108591	Particl	4930414L22Rik|AI449819	promoter of Mat2a antisense radiation induced circulating long non-coding RNA	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-82569051-4	chr18	82568956	82569156	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025251, intron 2 of 6)	intron (NM_001025251, intron 2 of 6)	14548.0	NM_001025254	17196.0	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-51467828-3	chr6	51467669	51467869	+	622.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016806, intron 1 of 10)	intron (NM_016806, intron 1 of 10)	2125.0	NR_104468	53379.0	Mm.155896	NM_016806	ENSMUSG00000004980	Hnrnpa2b1	9130414A06Rik|Hnrpa2|Hnrpa2b1|hnrnp-A	heterogeneous nuclear ribonucleoprotein A2/B1	protein-coding	1.11193624465246	0.303287119267178	0.29006301644097	0.27960208595022	0.264404027566219	0.781454917191791	0.293011283080186	1.82950257568712	1.73692849151574	0.577794395789864	0.96585843058813
Merged-chr2-109891813-2	chr2	109891713	109891913	+	719.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011699, intron 1 of 4)	intron (NM_011699, intron 1 of 4)	935.0	NM_011699	22343.0	Mm.235300	NM_011699	ENSMUSG00000027162	Lin7c	9130007B12Rik|AI303698|AU019331|AW125731|D2Ertd520e|LIN-7-C|LIN-7C|MALS-3|Veli3	lin-7 homolog C (C. elegans)	protein-coding	-0.209403471236441	0.26038244411333	-0.201367379003381	0.0762029715538444	0.144364145780223	-0.0141903588940663	-0.200497911612092	-0.203871144459989	-0.53693308058237	0.813946212833499	1
Merged-chr1-193175052-2	chr1	193174952	193175152	+	592.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_153137)	TTS (NM_153137)	1475.0	NM_181048	319266.0	Mm.482460	NM_181048	ENSMUSG00000079144	A130010J15Rik	-	RIKEN cDNA A130010J15 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43577487-2	chr4	43577387	43577587	+	760.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_172692, intron 1 of 16)	intron (NM_172692, intron 1 of 16)	-1248.0	NM_172866	242406.0	Mm.259311	NM_172866	ENSMUSG00000028468	Rgp1	1110029E03Rik|AI527196|F730001J03|mKIAA0258	RAB6A GEF compex partner 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-118662836-1	chr14	118662736	118662936	+	668.0	f0_c57.idr	intron (NM_001033336, intron 3 of 30)	MTE2b|LTR|ERVL-MaLR	14095.0	NM_001163675	239273.0	Mm.40537	NM_001033336	ENSMUSG00000032849	Abcc4	ABCC4-N1|D630049P08Rik|MOATB|MRP4	ATP-binding cassette, sub-family C (CFTR/MRP), member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-101214226-4	chr4	101214140	101214340	+	856.8250119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146145, intron 1 of 24)	intron (NM_146145, intron 1 of 24)	51042.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-79368880-4	chr7	79368788	79368988	+	738.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18139.0	NM_020599	19771.0	Mm.41653	NM_020599	ENSMUSG00000039194	Rlbp1	3110056M11Rik|CRALBP	retinaldehyde binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80700949-4	chr10	80700864	80701064	+	798.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172457, intron 1 of 3)	intron (NM_172457, intron 1 of 3)	856.0	NM_172457	208228.0	Mm.49309	NM_172457	ENSMUSG00000003348	Mob3a	5330417K06Rik|A630029F06|AV218468|Mobkl2a	MOB kinase activator 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-30628422-2	chr14	30628322	30628522	+	786.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2214.0	NM_011103	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	2.02820762955619	2.80917791283325	1.26605800214045	2.36549764269077	2.04576523636433	2.74322578644649	1.27359446455935	2.37822525262035	-0.0406343478205707	0.968212060470082	0.998431161219273
Merged-chr13-60826228-4	chr13	60826138	60826338	+	725.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23394.0	NM_027344	70202.0	Mm.158337	NM_027344	ENSMUSG00000056728	Ctsll3	2310051M13Rik	cathepsin L-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-91850087-2	chr12	91849987	91850187	+	614.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011344)	promoter-TSS (NM_011344)	-930.0	NM_011344	20338.0	Mm.250605	NM_011344	ENSMUSG00000020964	Sel1l	AW493766|Sel1h|mKIAA4137	sel-1 suppressor of lin-12-like (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-26590473-2	chr11	26590373	26590573	+	572.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027260, intron 2 of 12)	intron (NM_027260, intron 2 of 12)	3447.0	NM_027260	69922.0	Mm.285351	NM_027260	ENSMUSG00000064090	Vrk2	2810003O05Rik|AI447698	vaccinia related kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-90898676-4	chr5	90898544	90898744	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5255.0	NM_009140	20310.0	Mm.4979	NM_009140	ENSMUSG00000058427	Cxcl2	CINC-2a|GROb|Gro2|MIP-2|MIP-2a|Mgsa-b|Mip2|Scyb|Scyb2	chemokine (C-X-C motif) ligand 2	protein-coding	4.47038269811404	3.5704008003577	4.56270809043496	2.31493090798661	4.63952054625376	3.8845935957164	4.68037262544302	4.37599158422985	0.577667222138082	0.280418764778803	0.783412873231201
Merged-chr5-34525808-4	chr5	34525700	34525900	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011893)	promoter-TSS (NM_011893)	16.0	NM_011893	24055.0	Mm.5012	NM_011893	ENSMUSG00000054520	Sh3bp2	3BP2	SH3-domain binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-137786822-4	chr5	137786718	137786918	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144913)	promoter-TSS (NM_144913)	-117.0	NM_144913	231803.0	Mm.61193	NM_144913	ENSMUSG00000029726	Mepce	Bcdin3|D5Wsu46e	methylphosphate capping enzyme	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-17497259-2	chr6	17497159	17497359	+	768.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008591, intron 3 of 21)	intron (NM_008591, intron 3 of 21)	33302.0	NM_008591	17295.0	Mm.86844	NM_008591	ENSMUSG00000009376	Met	AI838057|HGF|HGFR|Par4|c-Met	met proto-oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-69784523-2	chr2	69784423	69784623	+	575.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077684, intron 2 of 8)	ORR1B1|LTR|ERVL-MaLR	4963.0	NM_001077684	75051.0	Mm.195726	NM_001077684	ENSMUSG00000070883	Ccdc173	4930525K21Rik|4930578N16Rik	coiled-coil domain containing 173	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-4702309-2	chr6	4702209	4702409	+	541.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001130188, intron 6 of 11)	intron (NM_001130188, intron 6 of 11)	44895.0	NM_001130188	20392.0	Mm.8739	NM_011360	ENSMUSG00000004631	Sgce	e-SG	sarcoglycan, epsilon	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-100924853-2	chr12	100924753	100924953	+	917.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026681, intron 25 of 29)	intron (NM_026681, intron 25 of 29)	-16655.0	NM_001177673	238377.0	Mm.32160	NM_175493	ENSMUSG00000047415	Gpr68	BB131428|Ogr1	G protein-coupled receptor 68	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129062904-3	chr4	129062782	129062982	+	946.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029219, intron 1 of 8)	intron (NM_029219, intron 1 of 8)	4611.0	NM_029219	75234.0	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-61056914-4	chr9	61056820	61057020	+	868.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39851.0	NR_040767	330956.0	Mm.207985	NR_040767	ENSMUSG00000111290	Gm5122	A430102L10	predicted gene 5122	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-38761448-4	chr6	38761354	38761554	+	876.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010433, intron 2 of 14)	intron (NM_010433, intron 2 of 14)	75857.0	NM_001136065	15258.0	Mm.23790	NM_010433	ENSMUSG00000061436	Hipk2	1110014O20Rik|B230339E18Rik|Stank	homeodomain interacting protein kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134659481-4	chr6	134659347	134659547	+	818.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170479, intron 2 of 3)	RSINE1|SINE|B4	18507.0	NM_026371	67774.0	Mm.41892	NM_026371	ENSMUSG00000042992	Borcs5	5830457J20Rik|AW124643|Loh12cr1	BLOC-1 related complex subunit 5	protein-coding	3.05884634280782	2.24490957044477	2.01758160394725	1.9623863736567	1.53880632797568	2.63918420709629	2.32162933612282	2.47196520034566	-0.257548292168832	0.771703917301205	0.998431161219273
Merged-chr4-139493821-4	chr4	139493728	139493928	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36720.0	NM_183148	212632.0	Mm.30464	NM_183148	ENSMUSG00000041025	Iffo2	C79267	intermediate filament family orphan 2	protein-coding	5.63320146769552	5.23307929338851	5.6434664698116	4.46573906227324	5.18708302812514	5.22907998394488	5.41077763502961	4.85569775103447	-0.162207726150728	0.625797325057763	0.980912176761026
Merged-chr10-121625085-2	chr10	121624985	121625185	+	784.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359618, intron 1 of 24)	intron (NM_001359618, intron 1 of 24)	1247.0	NM_001081056	73192.0	Mm.25042	NM_001081056	ENSMUSG00000034667	Xpot	1110004L07Rik|3110065H13Rik|AI452076|C79645|EXPORTIN-T	exportin, tRNA (nuclear export receptor for tRNAs)	protein-coding	-1.5061220274826	-1.47360709383584	-1.48343987814663	-1.49151681994238	-1.50383953926072	-1.47147628845725	-1.0170701920923	-1.49007105122263	2.15652851593596	0.535359572134045	1
Merged-chr2-92066877-4	chr2	92066783	92066983	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42713.0	NM_011957	26427.0	Mm.10353	NM_011957	ENSMUSG00000027230	Creb3l1	Oasis	cAMP responsive element binding protein 3-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-27593787-2	chr7	27593682	27593882	+	580.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110208, intron 1 of 13)	intron (NM_001110208, intron 1 of 13)	2230.0	NM_001110208	11652.0	Mm.177194	NM_007434	ENSMUSG00000004056	Akt2	2410016A19Rik|AW554154|PKB|PKBbeta	thymoma viral proto-oncogene 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-7996879-2	chr5	7996779	7996979	+	663.900024	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36407.0	NM_054098	117167.0	Mm.31403	NM_054098	ENSMUSG00000012428	Steap4	1110021O17Rik|AI481214|Tiarp|Tnfaip9	STEAP family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-12298736-2	chr12	12298636	12298836	+	802.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029758, intron 2 of 12)	MER94|DNA|hAT-Blackjack	36597.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-24936051-4	chr16	24935938	24936138	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 10 of 12)	intron (NM_178665, intron 10 of 12)	-123601.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-108464985-3	chr6	108464884	108465084	+	849.2333369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 44 of 61)	intron (NM_010585, intron 44 of 61)	-24759.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-74243807-2	chr1	74243707	74243907	+	605.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357387, intron 2 of 10)	intron (NM_001357387, intron 2 of 10)	7290.0	NM_029711	76709.0	Mm.337038	NM_029711	ENSMUSG00000006304	Arpc2	2210023N03Rik|34kDa|p34-Arc	actin related protein 2/3 complex, subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-29242429-2	chr6	29242329	29242529	+	690.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-26065.0	NM_001302934	23917.0	Mm.260707	NM_011829	ENSMUSG00000003500	Impdh1	B930086D20Rik|IMPDH-I	inosine monophosphate dehydrogenase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127478896-4	chr7	127478791	127478991	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-6330.0	NM_010183	14123.0	Mm.323505	NM_010183	ENSMUSG00000042423	Fbrs	Fbs|Fbs1	fibrosin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-45414308-2	chr13	45414208	45414408	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24566.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-107111002-3	chr3	107110908	107111108	+	793.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008417, exon 3 of 3)	3' UTR (NM_008417, exon 3 of 3)	9441.0	NM_008417	16490.0	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-107205333-4	chr3	107205227	107205427	+	979.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	16405.0	NM_001111143	229697.0	Mm.297051	NM_001111143	ENSMUSG00000046213	Cym	Gm131	chymosin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-97332252-4	chr7	97332152	97332352	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039039)	promoter-TSS (NM_001039039)	-71.0	NM_001039039	622320.0	Mm.334029	NM_001039039	ENSMUSG00000044952	Kctd21	EG622320	potassium channel tetramerisation domain containing 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-125106428-3	chr5	125106357	125106557	+	967.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011424, intron 5 of 46)	intron (NM_011424, intron 5 of 46)	72757.0	NM_001253905	20602.0	Mm.278646	NM_011424	ENSMUSG00000029478	Ncor2	N-CoR|SMRT|SMRTe	nuclear receptor co-repressor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-46788346-4	chr14	46788223	46788423	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009919)	promoter-TSS (NM_009919)	34.0	NM_001355011	12793.0	Mm.3261	NM_009919	ENSMUSG00000015759	Cnih1	0610007J15|CNIH-1|Cnih	cornichon family AMPA receptor auxiliary protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-6501448-3	chr18	6501374	6501574	+	921.2777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007935, intron 1 of 13)	B3|SINE|B2	-10617.0	NM_001276350	13831.0	Mm.312133	NM_007935	ENSMUSG00000024240	Epc1	2400007E14Rik|5730566F07Rik|A930032N02Rik|mir-1893	enhancer of polycomb homolog 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-19694169-4	chr3	19694080	19694280	+	891.50415	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_205769, exon 2 of 2)	exon (NM_205769, exon 2 of 2)	1216.0	NM_205769	12918.0	Mm.290689	NM_205769	ENSMUSG00000049796	Crh	CRF|Gm1347	corticotropin releasing hormone	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-123075983-2	chr10	123075883	123076083	+	936.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_153395, exon 1 of 34)	5' UTR (NM_153395, exon 1 of 34)	522.0	NM_001163024	67074.0	Mm.169924	NM_153395	ENSMUSG00000034602	Mon2	2610528O22Rik|AW495628|Sf21|mKIAA1040	MON2 homolog, regulator of endosome to Golgi trafficking	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-93598686-2	chr4	93598583	93598783	+	552.0	f0_balb.idr|f1_balb.idr	Intergenic	L1MEc|LINE|L1	-263172.0	NM_026954	69136.0	Mm.171558	NM_026954	ENSMUSG00000054000	Tusc1	2200001D17Rik|TSG-9	tumor suppressor candidate 1	protein-coding	1.32477719232037	2.42340716085894	2.05218343096654	2.2752945037248	2.7208178443367	2.44138184892789	2.94697668893945	2.60852003782486	1.37061055140963	0.109319270307952	0.518281641040431
Merged-chr3-152212807-2	chr3	152212707	152212907	+	611.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355374, intron 1 of 19)	Lx3C|LINE|L1	2385.0	NM_001355374	51886.0	Mm.278922	NM_057172	ENSMUSG00000028034	Fubp1	9530027K12Rik|D3Ertd330e|FBP|Fubp|Fubp4	far upstream element (FUSE) binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-143153995-2	chr6	143153895	143154095	+	628.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_153819)	promoter-TSS (NR_153819)	-64.0	NR_153819	102633311.0	Mm.333484	NR_153819		Gm31108	Gm31169	predicted gene, 31108	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-121188285-2	chr5	121188185	121188385	+	748.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_011202, intron 1 of 15)	intron (NM_011202, intron 1 of 15)	3112.0	NM_001109992	19247.0	Mm.8681	NM_011202	ENSMUSG00000043733	Ptpn11	2700084A17Rik|AW536184|PTP1D|PTP2C|SAP-2|SH-PTP2|SH-PTP3|SHP-2|Shp2|Syp	protein tyrosine phosphatase, non-receptor type 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-82820909-4	chr11	82820824	82821024	+	926.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001007465, intron 1 of 6)	intron (NM_001007465, intron 1 of 6)	8119.0	NM_026097	67338.0	Mm.341608	NM_026097	ENSMUSG00000020696	Rffl	1700051E09Rik|4930516L10Rik|BG080975|Carp2	ring finger and FYVE like domain containing protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-116011316-2	chr6	116011216	116011416	+	635.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	-16311.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-103434873-3	chr12	103434786	103434986	+	896.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194069, intron 1 of 3)	RMER10B|LTR|ERVL	697.0	NM_194069	52668.0	Mm.2121	NM_026790	ENSMUSG00000064215	Ifi27	1110013J02Rik|2900026P10Rik|D12Ertd647e|ISG12a|Ifi27l1	interferon, alpha-inducible protein 27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-3353170-2	chr8	3353070	3353270	+	562.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033378)	promoter-TSS (NM_001033378)	-245.0	NM_001033378	319493.0	Mm.234565	NM_001033378	ENSMUSG00000074497	A430078G23Rik	-	RIKEN cDNA A430078G23 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-74380559-4	chr1	74380459	74380659	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013612, intron 6 of 14)	intron (NM_013612, intron 6 of 14)	5356.0	NM_013612	18173.0	Mm.2913	NM_013612	ENSMUSG00000026177	Slc11a1	Bcg|Ity|Ity1|Lsh|Nramp|Nramp1|ity	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3823492-2	chr12	3823392	3823592	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271753, intron 1 of 22)	intron (NM_001271753, intron 1 of 22)	16332.0	NM_001271753	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-64057163-4	chr15	64057082	64057282	+	999.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360037, intron 1 of 11)	intron (NM_001360037, intron 1 of 11)	2582.0	NM_001360038	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-36727233-2	chr5	36727133	36727333	+	732.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21446.0	NM_133724	117197.0	Mm.46744	NM_133724	ENSMUSG00000060708	Bloc1s4	2610101N07Rik|Blos4|Cno	biogenesis of lysosomal organelles complex-1, subunit 4, cappuccino	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-40765770-4	chr9	40765661	40765861	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133733, intron 2 of 6)	intron (NM_133733, intron 2 of 6)	-35512.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	4.39980145790904	3.84751270588441	4.78045071184791	3.29841000206487	4.20928970100916	5.51963892498187	4.77256099437057	4.5534582501868	0.816256444500749	0.074028606355537	0.410891375174802
Merged-chr17-47527435-2	chr17	47527335	47527535	+	622.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081635, intron 1 of 6)	intron (NM_001081635, intron 1 of 6)	22384.0	NM_001081635	12445.0	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153357003-4	chr2	153356905	153357105	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039939, intron 2 of 11)	intron (NM_001039939, intron 2 of 11)	10866.0	NM_001039939	228790.0	Mm.330677	NM_001039939	ENSMUSG00000042548	Asxl1	mKIAA0978	additional sex combs like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171222031-2	chr1	171221929	171222129	+	882.724976	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001037170, exon 2 of 10)	5' UTR (NM_001037170, exon 2 of 10)	465.0	NM_001305585	11807.0	Mm.389209	NM_013474	ENSMUSG00000005681	Apoa2	Alp-2|Apo-AII|ApoA-II|ApoAII|Apoa-2|Hdl-1	apolipoprotein A-II	protein-coding	1.43266822646503	0.610391378056096	2.29076675250142	0.57883853427837	1.22887551756242	0.614275545541503	0.848302112743254	0.817492498787152	-1.90086361158947	0.201871113639264	0.687431302207346
Merged-chr2-93942449-2	chr2	93942349	93942549	+	545.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	14651.0	NM_001145034	620695.0	Mm.482106	NM_001145034	ENSMUSG00000087006	Gm13889	Ag2	predicted gene 13889	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-27194179-4	chr3	27194067	27194267	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 1 of 4)	L3|LINE|CR1	11163.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-53990063-3	chr17	53989960	53990160	+	765.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018751, intron 1 of 7)	intron (NM_018751, intron 1 of 7)	571.0	NM_018751	20888.0	Mm.10108	NM_018751	ENSMUSG00000023943	Sult1c1	(PST)G|P-SULT|ST1C1|Stp2|Sult1a2|mOLFST	sulfotransferase family, cytosolic, 1C, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-121677562-2	chr11	121677462	121677662	+	607.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4411.0	NM_178664	210004.0	Mm.386847	NM_178664	ENSMUSG00000046605	B3gntl1	6030413G23Rik	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3932606-2	chr19	3932506	3932706	+	896.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-2580.0	NM_019449	54445.0	Mm.262094	NM_019449	ENSMUSG00000036908	Unc93b1	Unc-93B1|Unc93b	unc-93 homolog B1 (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-87021274-2	chr9	87021174	87021374	+	794.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024195)	promoter-TSS (NM_024195)	-755.0	NM_024195	266690.0	Mm.30166	NM_024195	ENSMUSG00000032872	Cyb5r4	2810034J18Rik|B5+B5R|C79736|Cb5cb5r|Ncb5or|b5/b5r|b5b5r	cytochrome b5 reductase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-107592917-2	chr7	107592817	107593017	+	929.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2134.0	NM_008905	19024.0	Mm.2817	NM_008905	ENSMUSG00000036528	Ppfibp2	Cclp1	PTPRF interacting protein, binding protein 2 (liprin beta 2)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-13472539-2	chr17	13472439	13472639	+	894.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48917.0	NR_030763	272667.0	Mm.444718	NR_030763	ENSMUSG00000079711	Smok4a	4930513D10Rik|Smok2c	sperm motility kinase 4A	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-144694957-2	chr3	144694857	144695057	+	577.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001282037, intron 9 of 10)	intron (NM_001282037, intron 9 of 10)	25378.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-34799010-2	chr2	34798910	34799110	+	702.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145522, intron 1 of 7)	ID_B1|SINE|B4	902.0	NM_145522	227746.0	Mm.158705	NM_145522	ENSMUSG00000070953	Rabepk	8430412M01Rik|9530020D24Rik|AV073337|C87311|Rab9p40	Rab9 effector protein with kelch motifs	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-58770950-3	chr6	58770853	58771053	+	875.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60512.0	NM_001361967	73998.0	Mm.191892	NM_028705	ENSMUSG00000029804	Herc3	5730409F18Rik|AI646603|mKIAA0032	hect domain and RLD 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-42386526-2	chr6	42386426	42386626	+	598.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-13258.0	NM_023580	13835.0	Mm.133330	NM_023580	ENSMUSG00000029859	Epha1	5730453L17Rik|AL033318|Eph|Esk	Eph receptor A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-73765314-3	chr12	73765205	73765405	+	822.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008856, intron 12 of 13)	intron (NM_008856, intron 12 of 13)	-136019.0	NM_001313920	15251.0	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-38478478-2	chr2	38478378	38478578	+	586.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33219.0	NM_021606	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-25360906-2	chr2	25360806	25361006	+	744.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001033293)	TTS (NM_001033293)	-4574.0	NM_031843	83768.0	Mm.21440	NM_031843	ENSMUSG00000026958	Dpp7	DPPII|Dpp2|QPP	dipeptidylpeptidase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122698822-4	chr5	122698731	122698931	+	898.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8713.0	NM_001310720	18438.0	Mm.290884	NM_011026	ENSMUSG00000029470	P2rx4	AI504491|AW555605|D5Ertd444e|P2X4	purinergic receptor P2X, ligand-gated ion channel 4	protein-coding	-1.23826193677681	-1.21241040182355	-1.22270105026776	-0.934241458926562	-1.23783648736863	-1.21018037537722	-1.22037147302458	-0.929982742503718	0.0323590357436516	0.9924297640193	1
Merged-chr1-127484898-2	chr1	127484833	127485033	+	593.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger17|DNA|TcMar-Tigger	193088.0	NM_028135	72160.0	Mm.281287	NM_028135	ENSMUSG00000026347	Tmem163	2610024A01Rik|A-cre|Act-Cre|SV31|Tg(ACTB-cre)2Mrt|actin-cre|cre<actin>	transmembrane protein 163	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120719162-2	chr8	120719062	120719262	+	847.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-17196.0	NM_008320	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-77482114-3	chr8	77482000	77482200	+	727.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030113, intron 1 of 22)	intron (NM_030113, intron 1 of 22)	-34956.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27774001-2	chr2	27773901	27774101	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	63418.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-127319803-2	chr4	127319703	127319903	+	589.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5764.0	NM_008120	14612.0	Mm.24615	NM_008120	ENSMUSG00000050234	Gja4	AU020209|AW558810|Cnx37|Cx37|Gja-4	gap junction protein, alpha 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-120264448-2	chr1	120264348	120264548	+	585.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085409, intron 2 of 5)	intron (NM_001085409, intron 2 of 5)	832.0	NM_133186	68428.0	Mm.181033	NM_133186	ENSMUSG00000026389	Steap3	1010001D01Rik|Tsap6|pHyde	STEAP family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-51677938-4	chr11	51677845	51678045	+	969.258301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	10689.0	NM_025319	66050.0	Mm.35693	NM_025319	ENSMUSG00000007777	0610009B22Rik	-	RIKEN cDNA 0610009B22 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-110912185-2	chr5	110912085	110912285	+	873.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001267622, intron 2 of 22)	intron (NM_001267622, intron 2 of 22)	32382.0	NM_001267622	209683.0	Mm.295660	NM_024477	ENSMUSG00000033209	Ttc28	2310015L07Rik|6030435N04|AI428795|AI851761|BC002262|TPRBK	tetratricopeptide repeat domain 28	protein-coding	-2.18138529563533	-2.15523716995652	-2.1631445789866	-2.16963996020037	-2.05513010215571	-2.15352360143315	-2.16135451490766	-2.16847729006863	0.759018020146679	0.829933115115583	1
Merged-chr18-55204241-2	chr18	55204125	55204325	+	668.0	f0_balb.idr|f1_balb.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-211634.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	2.03912880421673	1.71570683095541	2.21212176948699	2.50739090013235	2.7317864881979	1.72716035347626	2.95985059296576	3.00994703645245	1.18560916446764	0.161805149696935	0.622889257560586
Merged-chr14-56811151-4	chr14	56811012	56811212	+	956.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_152252)	promoter-TSS (NR_152252)	352.0	NM_001253753	219105.0	Mm.473172	NM_144842	ENSMUSG00000040123	Zmym5	9830124H08Rik	zinc finger, MYM-type 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69989960-2	chr11	69989860	69990060	+	787.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_026017, intron 7 of 7)	intron (NM_026017, intron 7 of 7)	-1410.0	NM_019749	56486.0	Mm.272460	NM_019749	ENSMUSG00000018567	Gabarap	-	gamma-aminobutyric acid receptor associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31021675-2	chr14	31021575	31021775	+	647.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359857, intron 1 of 30)	B4A|SINE|B4	1970.0	NM_001359856	66923.0	Mm.27913	NM_025847	ENSMUSG00000042323	Pbrm1	2610016F04Rik|AI507524|BAF180|Pb1	polybromo 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-51164536-4	chr14	51164431	51164631	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	2271.0	NM_019398	54159.0	Mm.377125	NM_019398	ENSMUSG00000059606	Rnase2b	Ear5|Raf4|mR5	ribonuclease, RNase A family, 2B (liver, eosinophil-derived neurotoxin)	protein-coding	4.47192867324007	4.68555186827166	4.58829713140018	5.26694417797458	4.73581581900059	5.16364307148774	4.34234677015823	5.36907376173214	0.202441285267011	0.584108030975491	0.966905098736747
Merged-chr7-16042118-1	chr7	16042018	16042218	+	580.0	f1_c57bl6.idr	Intergenic	Intergenic	-29727.0	NM_001347559	666528.0	Mm.290718	NM_001099277	ENSMUSG00000078796	Zfp541	EG666528|Znf541	zinc finger protein 541	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-8819432-4	chr19	8819352	8819552	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081196)	promoter-TSS (NM_001081196)	51.0	NM_001081196	68693.0	Mm.476519	NM_001081196	ENSMUSG00000071659	Hnrnpul2	1110031M08Rik|AI465155|Hnrpul2	heterogeneous nuclear ribonucleoprotein U-like 2	protein-coding	6.13161191628084	6.12128603083736	5.62439281060016	6.29351026224018	5.61263432144218	5.85090801904226	5.73967421416768	5.66513414225164	-0.388443446745427	0.111312212111292	0.521828942224762
Merged-chr8-56312391-1	chr8	56312291	56312491	+	989.0	f1_balb.idr	intron (NM_008278, intron 4 of 6)	intron (NM_008278, intron 4 of 6)	17839.0	NM_008278	15446.0	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	0.570823896692797	1.38412449596054	0.951736949313887	0.58441990273411	0.572860016531823	1.15024943847535	1.10226829481555	1.17793243582088	0.450688327587538	0.777109641458929	0.998431161219273
Merged-chr11-97793370-4	chr11	97793262	97793462	+	853.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-6203.0	NM_010688	16796.0	Mm.271967	NM_010688	ENSMUSG00000038366	Lasp1	AA408629|Def-4|LASP-1|MLN 50|SH3P6|Tg(Col1a1-lacZ)1Ngma	LIM and SH3 protein 1	protein-coding	-1.11651751721408	-1.22964054751173	-1.23965385643774	-0.955867492901793	-1.11290731241097	-1.22747062169595	-1.23738706278237	-1.24640677427394	-1.15172394502503	0.713766605708481	1
Merged-chr1-36001098-4	chr1	36000974	36001174	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-67326.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3645937-2	chr19	3645837	3646037	+	674.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008513, intron 5 of 22)	intron (NM_008513, intron 5 of 22)	40627.0	NM_008513	16973.0	Mm.274581	NM_008513	ENSMUSG00000024913	Lrp5	BMND1|HBM|LR3|LRP7|OPPG|mKIAA4142	low density lipoprotein receptor-related protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-3136130-2	chr11	3136046	3136246	+	1000.0	f0_balb.idr|f1_balb.idr	intron (NM_030207, intron 24 of 32)	intron (NM_030207, intron 24 of 32)	12125.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-47314125-4	chr4	47314044	47314244	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009928)	TTS (NM_009928)	-39078.0	NM_001312868	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126756437-2	chr8	126756337	126756537	+	684.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-92583.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94928718-2	chr10	94928618	94928818	+	648.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_018797, intron 1 of 30)	intron (NM_018797, intron 1 of 30)	15860.0	NM_018797	54712.0	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-8353247-2	chr5	8353147	8353347	+	629.200012	f1_balb.idr|f1_c57bl6.idr	intron (NM_001007220, intron 2 of 28)	intron (NM_001007220, intron 2 of 28)	14913.0	NM_001007221	11496.0	Mm.275895	NM_001007220	ENSMUSG00000040537	Adam22	2900022I03Rik|AI854032|MDC2	a disintegrin and metallopeptidase domain 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-151973485-4	chr2	151973382	151973582	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289151)	promoter-TSS (NM_001289151)	-88.0	NM_001289151	73847.0	Mm.272444	NM_028666	ENSMUSG00000027459	Fam110a	1700008J10Rik|5430432M24Rik|AI747080	family with sequence similarity 110, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116870704-2	chr11	116870604	116870804	+	690.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178620, intron 10 of 12)	PB1D11|SINE|Alu	16704.0	NM_001361586	69900.0	Mm.348004	NM_178620	ENSMUSG00000020818	Mfsd11	2600014M03Rik	major facilitator superfamily domain containing 11	protein-coding	-1.05250607526984	-0.402739045299741	-1.04366794023272	-1.04875758567453	-0.897607459308638	-1.02893395323655	-1.040926557591	-1.04836336437307	-1.93683734114878	0.536907385174869	1
Merged-chr17-34005644-4	chr17	34005530	34005730	+	790.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MYSERV-int|LTR|ERVK	-5283.0	NM_001347346	14972.0	Mm.422886	NM_001001892	ENSMUSG00000061232	H2-K1	H-2K|H-2K(d)|H2-K|K-f	histocompatibility 2, K1, K region	protein-coding	3.9364798840634	4.69080066953841	5.01931747387202	4.29517315018777	3.66566771479322	3.47879806875729	2.96498086942018	4.10525765148816	-1.23724196951055	0.00965891690660458	0.10631897710591
Merged-chr14-57399039-4	chr14	57398952	57399152	+	982.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030004)	promoter-TSS (NM_030004)	-569.0	NM_030004	68631.0	Mm.25539	NM_030004	ENSMUSG00000021947	Cryl1	1110025H08Rik|A230106J09Rik|C85932|gul3dh	crystallin, lambda 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118317253-2	chr11	118317153	118317353	+	634.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011594, intron 3 of 4)	intron (NM_011594, intron 3 of 4)	25281.0	NM_021440	58251.0	Mm.439815	NM_021440	ENSMUSG00000076433	Cep295nl	Ddc8|FS39|Kiaa1731nl	CEP295 N-terminal like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-17166609-4	chr19	17166549	17166749	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181348, intron 9 of 19)	ORR1F|LTR|ERVL-MaLR	172856.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-67317537-2	chr17	67317437	67317637	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	36922.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-161250068-2	chr1	161249950	161250150	+	597.200012	f1_balb.idr|f1_c57bl6.idr	intron (NM_001303408, intron 1 of 5)	intron (NM_001303408, intron 1 of 5)	1160.0	NM_007453	11758.0	Mm.186185	NM_007453	ENSMUSG00000026701	Prdx6	1-Cys Prx|1-cysPrx|9430088D19Rik|AA690119|Aop2|Brp-12|CP-3|GPx|Ltw-4|Ltw4|Lvtw-4|NSGPx|ORF06|Prdx5|aiPLA2	peroxiredoxin 6	protein-coding	0.273381778403965	0.135584716824507	0.956818966735253	0.12226779068517	0.278239039614542	0.137264645447149	0.971304072796408	0.123288374146779	0.0410553063043932	0.983477566004291	1
Merged-chr5-136170214-4	chr5	136170121	136170321	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178751, intron 1 of 2)	intron (NM_178751, intron 1 of 2)	435.0	NM_178751	269717.0	Mm.308396	NM_178751	ENSMUSG00000039747	Orai2	A730041O15Rik|Tmem142b	ORAI calcium release-activated calcium modulator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-25589759-2	chr9	25589659	25589859	+	609.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 6 of 7)	intron (NM_026189, intron 6 of 7)	108162.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-12506832-2	chr1	12506732	12506932	+	565.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	80846.0	NR_105759	102465961.0		NR_105759	ENSMUSG00000098555	Mir6341	Gm27262|mmu-mir-6341	microRNA 6341	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-46958996-4	chr18	46958909	46959109	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178377, intron 1 of 6)	CpG	133.0	NM_178377	69456.0	Mm.210734	NM_178377	ENSMUSG00000042705	Commd10	2310003A05Rik|AU019438|DRWMS2|Tg(Vav1-icre)A2Kio|Vav-cre|Vav-iCre|Vav1-Cre|VavCre	COMM domain containing 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-140609759-4	chr6	140609645	140609845	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14_RN|LTR|ERV1	-12918.0	NM_178803	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-66871011-2	chr16	66870911	66871111	+	631.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178721, intron 3 of 9)	RMER6A|LTR|ERVK	213893.0	NR_040512	75501.0	Mm.394300	NR_040512	ENSMUSG00000092599	1700010K23Rik	-	RIKEN cDNA 1700010K23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-73970557-4	chr17	73970477	73970677	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20381.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-83605056-1	chr8	83604956	83605156	+	622.0	f1_c57bl6.idr	Intergenic	B4|SINE|B4	-3119.0	NM_018808	81489.0	Mm.282092	NM_018808	ENSMUSG00000005483	Dnajb1	0610007I11Rik|DjB1|HSPF1|Hdj1|Hsp40	DnaJ heat shock protein family (Hsp40) member B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-79331888-2	chr15	79331788	79331988	+	928.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3517.0	NM_001199023	53357.0	Mm.155620	NM_016915	ENSMUSG00000042632	Pla2g6	BB112799|PNPLA9|iPLA(2)beta|iPLA2|iPLA2beta	phospholipase A2, group VI	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6670541-2	chr19	6670441	6670641	+	597.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-127471.0	NM_009203	20521.0	Mm.391146	NM_009203	ENSMUSG00000061742	Slc22a12	AI987855|OAT4L|Rst|Slc22al2|URAT1	solute carrier family 22 (organic anion/cation transporter), member 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-88503630-2	chr10	88503530	88503730	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001146690, exon 1 of 9)	exon (NM_001146690, exon 1 of 9)	340.0	NR_027477	212862.0	Mm.288897	NM_144807	ENSMUSG00000060002	Chpt1	-	choline phosphotransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-43815965-7	chr19	43815798	43815998	+	910.003967	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013806, intron 16 of 31)	PB1D11|SINE|Alu	-22905.0	NR_033472	100038628.0	Mm.212585	NR_033472	ENSMUSG00000025194	Gm10768	-	predicted gene 10768	ncRNA	2.05639346295565	1.49570815468715	1.03430041627368	2.0090337159754	2.14601850073967	1.50633584471091	1.61873908193408	1.02122618271221	-0.221848283252641	0.854193830213096	0.998431161219273
Merged-chr6-31065670-4	chr6	31065601	31065801	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2608.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-88727438-4	chr4	88727344	88727544	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4936.0	NM_172871	242521.0	Mm.260601	NM_172871	ENSMUSG00000070923	Klhl9	8030469P05|C530050O22Rik|mKIAA1354	kelch-like 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-155235865-2	chr4	155235765	155235965	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13330.0	NM_001357191	20481.0	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	-0.641487060233449	-0.630559855633698	-0.174003678654022	-0.636904926344493	-0.640805732188305	-0.629751913081728	-0.04875234552934	-0.636422463449559	0.459242966530252	0.873516462285822	1
Merged-chr18-80148905-2	chr18	80148805	80149005	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175028, intron 1 of 3)	Lx9|LINE|L1	2577.0	NM_175028	240442.0	Mm.26594	NM_175028	ENSMUSG00000053950	Adnp2	8430420L05Rik|BC024969|Kiaa0863|Zfp508|mKIAA0863	ADNP homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-9062896-2	chr19	9062796	9062996	+	906.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286518, intron 6 of 6)	intron (NM_001286518, intron 6 of 6)	25060.0	NM_011681	22287.0	Mm.2258	NM_011681	ENSMUSG00000024653	Scgb1a1	CC10|CC16|CCSP|PCB-BP|UG|UGB|Utg	secretoglobin, family 1A, member 1 (uteroglobin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-96738177-4	chr10	96738070	96738270	+	915.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	121169.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-72205632-4	chr11	72205557	72205757	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155065, intron 1 of 19)	intron (NR_155065, intron 1 of 19)	1825.0	NR_155065	74477.0	Mm.289697	NM_028963	ENSMUSG00000020807	4933427D14Rik	C85113|Kiaa0753|MNR	RIKEN cDNA 4933427D14 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-31837626-4	chr16	31837530	31837730	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357281, intron 12 of 22)	intron (NM_001357281, intron 12 of 22)	-41180.0	NM_013900	30060.0	Mm.30988	NM_013900	ENSMUSG00000022780	Meltf	CD228|MTf|Mfi2	melanotransferrin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-123036128-4	chr8	123035799	123035999	+	764.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 1 of 12)	B3|SINE|B2	6385.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65630943-3	chr9	65630845	65631045	+	857.349182	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028030, intron 1 of 7)	CpG	363.0	NM_028030	71973.0	Mm.29148	NM_028030	ENSMUSG00000032387	Rbpms2	2400008B06Rik|AI316523	RNA binding protein with multiple splicing 2	protein-coding	-0.73428542253146	-0.724498605925236	-0.727712433322492	-0.308406471629701	-0.733676550276079	-0.723773189141397	-0.727004212961365	-0.195327852850623	0.441262738279742	0.882069886315526	1
Merged-chr9-89280498-2	chr9	89280398	89280598	+	570.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	69114.0	NM_001359993	107885.0	Mm.486274	NM_026829	ENSMUSG00000066442	Mthfs	1110034I12Rik|2310020H23Rik|AI119695	5, 10-methenyltetrahydrofolate synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-12868295-4	chr10	12868200	12868400	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6565.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-36727896-7	chr15	36727753	36727953	+	931.261902	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C-int|LTR|ERVK	63079.0	NM_001253807	22631.0	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-21651872-3	chr18	21651772	21651972	+	851.138916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081403, exon 1 of 8)	exon (NM_001081403, exon 1 of 8)	307.0	NM_001271580	74644.0	Mm.329311	NM_001271580		4930426D05Rik	-	RIKEN cDNA 4930426D05 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-46859680-3	chr18	46859578	46859778	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029008, intron 1 of 19)	intron (NM_029008, intron 1 of 19)	9639.0	NM_029008	74574.0	Mm.26379	NM_029008	ENSMUSG00000024481	Lvrn	4833403I15Rik|APQ|Aqpep	laeverin	protein-coding	1.02182677098541	0.572213795022236	0.557457978565147	0.54580175256842	1.03316661658979	1.59861052716951	1.87919703819359	0.547855956285041	2.97568797840771	0.0698803427555643	0.397483100054327
Merged-chr11-116130619-4	chr11	116130515	116130715	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_178802, exon 1 of 6)	exon (NM_178802, exon 1 of 6)	513.0	NM_178802	338364.0	Mm.439976	NM_178802	ENSMUSG00000054517	Trim65	4732463G12Rik	tripartite motif-containing 65	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-20265561-2	chr5	20265461	20265661	+	864.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001170746, intron 6 of 22)	intron (NM_001170746, intron 6 of 22)	358043.0	NM_015823	50791.0	Mm.332231	NM_015823	ENSMUSG00000040003	Magi2	AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705	membrane associated guanylate kinase, WW and PDZ domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-82872323-3	chr18	82872237	82872437	+	693.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16440.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-51414746-4	chr10	51414655	51414855	+	969.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65857.0	NM_008147	14727.0	Mm.439661	NM_008147	ENSMUSG00000112023	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-100213668-2	chr6	100213568	100213768	+	703.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	73690.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-9373326-4	chr11	9373240	9373440	+	997.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_178259, exon 30 of 62)	exon (NM_178259, exon 30 of 62)	181398.0	NM_178259	268379.0	Mm.39270	NM_178259	ENSMUSG00000004668	Abca13	9830132L24|A930002G16Rik|AI956815	ATP-binding cassette, sub-family A (ABC1), member 13	protein-coding	0.176500758544371	0.97865017402278	-0.274542845541278	-0.280215877678107	-0.288359958579508	-0.265678144131906	-0.272934339403161	-0.279219541686967	-4.12884787760395	0.077627982569376	1
Merged-chr1-58719680-2	chr1	58719580	58719780	+	704.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355056, intron 1 of 8)	intron (NM_001355056, intron 1 of 8)	6394.0	NM_001355056	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-51196524-2	chr3	51196424	51196624	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-27923.0	NM_009834	12457.0	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-110684623-4	chr13	110684522	110684722	+	998.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-218877.0	NR_131193	75139.0	Mm.490931	NR_131193	ENSMUSG00000114472	Gm38397	-	predicted gene, 38397	ncRNA	1.55494538379326	1.11627908878278	1.68528545983767	2.27161094474463	2.08830220948894	1.75800238885198	2.27610585351697	1.07841275459557	0.408268659974511	0.722217921129244	0.998431161219273
Merged-chr10-81362570-2	chr10	81362470	81362670	+	866.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028657, intron 6 of 9)	intron (NM_028657, intron 6 of 9)	3250.0	NM_001014836	432479.0	Mm.440450	NM_001014836	ENSMUSG00000020234	4930404N11Rik	2210409H10Rik|5730551K18Rik|AI854616	RIKEN cDNA 4930404N11 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32915192-2	chr2	32915092	32915292	+	548.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146119, intron 5 of 13)	intron (NM_146119, intron 5 of 13)	39058.0	NM_146119	227737.0	Mm.301646	NM_146119	ENSMUSG00000026796	Fam129b	9130404D14Rik	family with sequence similarity 129, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-65107451-4	chr5	65107385	65107585	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347355)	promoter-TSS (NM_001347355)	-83.0	NM_001347355	71778.0	Mm.10281	NM_175174	ENSMUSG00000054920	Klhl5	1300013C10Rik	kelch-like 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-83530278-2	chr9	83530178	83530378	+	543.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-18060.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55595067-2	chr14	55594967	55595167	+	701.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_194346, exon 7 of 21)	exon (NM_194346, exon 7 of 21)	3325.0	NM_194346	268749.0	Mm.23748	NM_194346	ENSMUSG00000047098	Rnf31	AL033293|BC031509|Flj10111|HOIP|Paul|mFLJ00217	ring finger protein 31	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-44734708-3	chr17	44734587	44734787	+	660.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_073392, intron 2 of 7)	CpG	1489.0	NR_073425	12393.0	Mm.391013	NM_009820	ENSMUSG00000039153	Runx2	AML3|Cbf|Cbfa-1|Cbfa1|LS3|Osf2|PEBP2aA|Pebp2a1|Pebpa2a	runt related transcription factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-121811967-2	chr5	121811867	121812067	+	810.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359153, intron 22 of 23)	intron (NM_001359153, intron 22 of 23)	7306.0	NR_105998	102465624.0		NR_105998	ENSMUSG00000099063	Mir7031	Gm27859|mmu-mir-7031	microRNA 7031	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-14290746-2	chr2	14290646	14290846	+	730.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008625, intron 12 of 29)	intron (NM_008625, intron 12 of 29)	29743.0	NR_030609	100124488.0		NR_030609	ENSMUSG00000077897	Mir511	Mirn511|mir-511|mmu-mir-511	microRNA 511	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-128843788-4	chr6	128843662	128843862	+	999.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17447.0	NM_030599	80782.0	Mm.6180	NM_030599	ENSMUSG00000079298	Klrb1b	Klrb1d|Ly55b|Ly55d|NKR-P1B|NKR-P1D|Nkrp1-b|Nkrp1b|Nkrp1d|ly-55b|ly-55d	killer cell lectin-like receptor subfamily B member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-34841975-4	chr1	34841872	34842072	+	642.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160236, intron 1 of 6)	intron (NM_001160236, intron 1 of 6)	1078.0	NM_174997	214469.0	Mm.120151	NM_174997	ENSMUSG00000037503	Fam168b	Mani|mKIAA4042	family with sequence similarity 168, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-79251775-2	chr11	79251675	79251875	+	775.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_019653, intron 1 of 8)	RSINE1|SINE|B4	2920.0	NM_019653	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-24778577-4	chr16	24778477	24778677	+	768.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 8 of 12)	intron (NM_178665, intron 8 of 12)	56722.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-73391128-2	chr7	73391028	73391228	+	547.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177740, intron 1 of 3)	intron (NM_177740, intron 1 of 3)	-15354.0	NR_040324	319783.0	Mm.349813	NR_040324	ENSMUSG00000097756	A730056A06Rik	C76391	RIKEN cDNA A730056A06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-113500781-4	chr13	113500681	113500881	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045501, intron 1 of 6)	ORR1F|LTR|ERVL-MaLR	2063.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80857376-4	chr7	80857283	80857483	+	864.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4725.0	NM_009553	22691.0	Mm.358645	NM_009553	ENSMUSG00000038797	Zscan2	Zfp-29|Zfp29	zinc finger and SCAN domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-38636891-8	chr6	38636929	38637129	+	839.1726070000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001033171, exon 1 of 5)	exon (NM_001033171, exon 1 of 5)	210.0	NM_001033171	74253.0	Mm.121859	NM_001033171	ENSMUSG00000071537	Klrg2	2310020F24Rik	killer cell lectin-like receptor subfamily G, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-14897321-3	chr8	14897206	14897406	+	853.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_012000, exon 3 of 3)	3' UTR (NM_012000, exon 3 of 3)	8770.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-53760546-2	chr11	53760446	53760646	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3108.0	NR_106131	102465772.0		NR_106131	ENSMUSG00000099153	Mir7671	Gm27802|mmu-mir-7671	microRNA 7671	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-10973785-4	chr4	10973687	10973887	+	658.020813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	33832.0	NM_175175	71801.0	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	2.82305343182692	1.7974736048245	1.73725971801546	1.23519791547466	2.66219480109894	1.58350615609874	2.81717558059706	2.27406400221537	0.786171300247835	0.431076269842256	0.904679012727573
Merged-chr5-149336064-4	chr5	149335961	149336161	+	801.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	71057.0	NM_009663	11690.0	Mm.19844	NM_009663	ENSMUSG00000060063	Alox5ap	Flap	arachidonate 5-lipoxygenase activating protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-51399799-2	chr13	51399699	51399899	+	980.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-8819.0	NM_010101	13610.0	Mm.136736	NM_010101	ENSMUSG00000067586	S1pr3	AI132464|Edg3|Lpb3|S1p3	sphingosine-1-phosphate receptor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-34428923-3	chr15	34428788	34428988	+	879.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358780, intron 14 of 18)	intron (NM_001358780, intron 14 of 18)	14337.0	NM_009083	19946.0	Mm.358632	NM_009083	ENSMUSG00000058600	Rpl30	-	ribosomal protein L30	protein-coding	0.288438225411957	0.744522825382345	0.330738631354572	0.314891019681146	0.292386539888354	0.355812233303241	0.335259320890552	0.317663696098699	-0.86677524946348	0.606142435905851	1
Merged-chr1-120019650-4	chr1	120019533	120019733	+	974.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001012322, intron 1 of 13)	intron (NM_001012322, intron 1 of 13)	12653.0	NM_001012322	319229.0	Mm.189223	NM_001012322	ENSMUSG00000026387	Sctr	6530402O03Rik	secretin receptor	protein-coding	1.81737169683527	2.86982544789565	3.28997886790436	3.41119063149639	1.18107115574223	1.63043294632638	2.18028930244833	1.93998020184203	-2.55895087926545	0.00524086518009709	0.069250991663882
Merged-chr5-31154322-4	chr5	31154213	31154413	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008622)	promoter-TSS (NM_008622)	-62.0	NM_008622	17527.0	Mm.271923	NM_008622	ENSMUSG00000107283	Mpv17	Tg.Mpv17	MpV17 mitochondrial inner membrane protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-138114366-1	chr3	138114266	138114466	+	760.0	f0_balb.idr	intron (NM_001355052, intron 11 of 21)	intron (NM_001355052, intron 11 of 21)	17287.0	NM_008642	17777.0	Mm.2941	NM_008642	ENSMUSG00000028158	Mttp	1810043K16Rik|MTP	microsomal triglyceride transfer protein	protein-coding	-1.84303373260285	-1.81303463126392	-1.82210660711932	-1.82955859819738	-1.84092785115721	-1.81106869625141	-1.8200529106377	-1.54273750312762	1.50114612804783	0.670102668014672	1
Merged-chr16-76680787-4	chr16	76680687	76680887	+	916.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	98305.0	NR_155453	102632814.0		NR_155453	ENSMUSG00000109333	Gm30790	Gm45028	predicted gene, 30790	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127542698-5	chr10	127542731	127542931	+	898.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 77 of 88)	intron (NM_008512, intron 77 of 88)	-8272.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	0.454756790750123	0.31598798558697	0.306842727310235	1.1930781294711	0.459992449447053	1.23987344991855	0.515860277376903	0.30095997109887	0.271038636732385	0.87778863441412	1
Merged-chr2-38287296-4	chr2	38287195	38287395	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146122)	promoter-TSS (NM_146122)	89.0	NM_146122	227801.0	Mm.314245	NM_146122	ENSMUSG00000035392	Dennd1a	6030446I19Rik|connecdenn	DENN/MADD domain containing 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-61977478-4	chr9	61977433	61977633	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028748, intron 2 of 7)	MER20|DNA|hAT-Charlie	-30734.0	NM_024245	71819.0	Mm.259374	NM_024245	ENSMUSG00000032254	Kif23	3110001D19Rik|C87313|CHO1|Knsl5|MKLP-1|MKLP1	kinesin family member 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180858938-1	chr1	180858838	180859038	+	629.833313	f0_c57.idr	intron (NM_145943, intron 3 of 6)	ORR1B1|LTR|ERVL-MaLR	7787.0	NM_145943	208768.0	Mm.272625	NM_145943	ENSMUSG00000038806	Sde2	-	SDE2 telomere maintenance homolog (S. pombe)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-69017125-2	chr2	69017020	69017220	+	640.0	f0_balb.idr|f0_c57.idr	intron (NM_001347161, intron 4 of 10)	intron (NM_001347161, intron 4 of 10)	-118680.0	NM_181547	329416.0	Mm.90047	NM_181547	ENSMUSG00000034738	Nostrin	Daip2|mDaIP2	nitric oxide synthase trafficker	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46313173-2	chr19	46313073	46313273	+	580.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028627, intron 17 of 17)	intron (NM_028627, intron 17 of 17)	7243.0	NM_001177370	18034.0	Mm.102365	NM_019408	ENSMUSG00000025225	Nfkb2	NF-kappaB2|lyt|p49|p49/p100|p50B|p52	nuclear factor of kappa light polypeptide gene enhancer in B cells 2, p49/p100	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-17159970-4	chr11	17159857	17160057	+	977.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024459, intron 1 of 5)	CpG	659.0	NM_024459	19058.0	Mm.41840	NM_024459	ENSMUSG00000033953	Ppp3r1	CaNB1|Cnb1|MCIP1	protein phosphatase 3, regulatory subunit B, alpha isoform (calcineurin B, type I)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114669748-2	chr11	114669648	114669848	+	591.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001048058, intron 2 of 3)	intron (NM_001048058, intron 2 of 3)	967.0	NM_001048058	67671.0	Mm.238817	NM_023372	ENSMUSG00000057322	Rpl38	0610025G13Rik|Rbt|Ts|Tss	ribosomal protein L38	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-121234107-3	chr11	121234027	121234227	+	869.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3109.0	NM_026272	67608.0	Mm.291832	NM_026272	ENSMUSG00000000056	Narf	4430402O11Rik	nuclear prelamin A recognition factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70671640-2	chr8	70671540	70671740	+	648.083313	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-1591.0	NM_001359042	50783.0	Mm.248188	NM_015816	ENSMUSG00000031848	Lsm4	-	LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	-0.571978969863359	0.594160397072272	-0.559996772032576	-0.564460415658374	-0.570851744348264	-0.553004044975779	-0.336911494105259	-0.563677150012964	-2.94322582827099	0.258836077423606	1
Merged-chr5-62521230-3	chr5	62521136	62521336	+	844.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	244941.0	NM_178407	212285.0	Mm.244403	NM_178407	ENSMUSG00000037999	Arap2	Centd1|Gm148|mKIAA0580	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88215129-2	chr3	88215029	88215229	+	651.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_037276)	promoter-TSS (NR_037276)	-42.0	NR_037276	100526540.0		NR_037276	ENSMUSG00000092988	Mir3093	mir-3093|mmu-mir-3093	microRNA 3093	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-108753784-3	chr6	108753726	108753926	+	606.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	AT_rich|Low_complexity|Low_complexity	-29233.0	NM_026011	67166.0	Mm.271178	NM_026011	ENSMUSG00000030105	Arl8b	2610313E07Rik|3100002J04Rik|Arl10c|gie1	ADP-ribosylation factor-like 8B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-58999896-4	chr4	58999799	58999999	+	873.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3294.0	NM_001033165	72429.0	Mm.317801	NM_001033165	ENSMUSG00000070972	Dnajc25	2010109C08Rik|2010203O07Rik	DnaJ heat shock protein family (Hsp40) member C25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-76323663-2	chr12	76323563	76323763	+	566.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1228.0	NM_001101471	238276.0	Mm.311452	NM_001101471	ENSMUSG00000021057	Akap5	3526401B18Rik|AKAP 150|AKAP-5|AKAP150|BB098886|Gm258|P150	A kinase (PRKA) anchor protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-104742452-4	chr12	104742357	104742557	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_148948, intron 1 of 26)	intron (NM_148948, intron 1 of 26)	9495.0	NM_148948	192119.0	Mm.21135	NM_148948	ENSMUSG00000041415	Dicer1	1110006F08Rik|D12Ertd7e|mKIAA0928	dicer 1, ribonuclease type III	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-140180895-1	chr1	140180795	140180995	+	540.0	f0_balb.idr	intron (NM_009888, intron 1 of 21)	intron (NM_009888, intron 1 of 21)	2516.0	NM_009888	12628.0	Mm.8655	NM_009888	ENSMUSG00000026365	Cfh	Mud-1|NOM|Sas-1|Sas1	complement component factor h	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-104995898-4	chr3	104995757	104995957	+	858.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34148.0	NM_009520	22414.0	Mm.10740	NM_009520	ENSMUSG00000027840	Wnt2b	Wnt13	wingless-type MMTV integration site family, member 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-87594413-2	chr11	87594313	87594513	+	905.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133215, intron 2 of 18)	intron (NM_133215, intron 2 of 18)	2247.0	NM_133215	170749.0	Mm.399376	NM_133215	ENSMUSG00000018401	Mtmr4	AA596759|ESTM44|FYVE-DSP2|ZFYVE11|mKIAA0647	myotubularin related protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-148994715-2	chr5	148994614	148994814	+	778.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_102383, intron 1 of 1)	intron (NR_102383, intron 1 of 1)	500.0	NR_102383	319982.0	Mm.33303	NR_102383	ENSMUSG00000106951	5930430L01Rik	-	RIKEN cDNA 5930430L01 gene	ncRNA	2.71758396830926	2.75654547043992	2.55964930021967	2.10186845539302	2.73923916007711	2.24376342830895	2.3257549717871	2.79061031661932	-0.0106266658149892	0.988870306620782	0.998431161219273
Merged-chr16-13373167-4	chr16	13373063	13373263	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153588, intron 1 of 14)	intron (NM_153588, intron 1 of 14)	14742.0	NM_153588	239719.0	Mm.270643	NM_153588	ENSMUSG00000009569	Mkl2	Gt4-1|MRTF-B|Mrtfb|mKIAA1243	MKL/myocardin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-46230040-3	chr9	46229954	46230154	+	616.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009692, exon 4 of 4)	exon (NM_009692, exon 4 of 4)	1424.0	NM_009692	11806.0	Mm.26743	NM_009692	ENSMUSG00000032083	Apoa1	Alp-1|Apoa-1|Brp-14|Ltw-1|Lvtw-1|Sep-1|Sep-2|Sep2|apo-AI|apoA-I	apolipoprotein A-I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-37140770-3	chr3	37140687	37140887	+	968.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14833.0	NM_008366	16183.0	Mm.14190	NM_008366	ENSMUSG00000027720	Il2	Il-2	interleukin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-103719953-4	chr5	103719851	103720051	+	911.275024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34211.0	NM_133919	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-37275475-2	chr17	37275417	37275617	+	690.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4901.0	NM_146515	258508.0	Mm.377544	NM_146515	ENSMUSG00000061972	Olfr99	MOR156-1	olfactory receptor 99	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-5062244-4	chr7	5062149	5062349	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_133671, exon 1 of 12)	5' UTR (NM_133671, exon 1 of 12)	106.0	NM_001205231	22185.0	Mm.360389	NM_133671	ENSMUSG00000030435	U2af2	65kDa	U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-55631331-4	chr4	55631208	55631408	+	979.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-98833.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	4.91601523113021	4.21914527741697	4.33620771646486	5.22395671432114	4.19995476415062	4.67923789492341	4.7274745337434	4.72178660018225	-0.190390899375632	0.620940573713742	0.979324117529246
Merged-chr5-121450096-4	chr5	121450011	121450211	+	977.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026129, intron 1 of 2)	intron (NM_026129, intron 1 of 2)	2363.0	NM_026129	67397.0	Mm.154570	NM_026129	ENSMUSG00000029616	Erp29	1200015M03Rik|2810446M09Rik|AW209030|Erp28|Erp31|PDI-Db	endoplasmic reticulum protein 29	protein-coding	3.67154882910824	3.2518088902371	3.44820666008791	4.07581932764716	3.86391440042851	3.76740100316484	3.5635443089547	3.68446122069416	0.103056065576018	0.836947197430101	0.998431161219273
Merged-chr4-47333734-4	chr4	47333630	47333830	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19492.0	NM_001312868	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47408498-4	chr17	47408428	47408628	+	978.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6183.0	NM_001172091	75462.0	Mm.46129	NM_029296	ENSMUSG00000047150	1700001C19Rik	-	RIKEN cDNA 1700001C19 gene	protein-coding	3.21026851018745	3.07666794215062	3.55573206128179	3.99873904177897	3.58009171923252	3.33054556779285	3.72968635406194	3.39637321664686	0.00500733481534283	0.992635244776788	0.998431161219273
Merged-chr7-64344338-2	chr7	64344238	64344438	+	620.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	29757.0	NM_177893	330554.0	Mm.236510	NM_177893	ENSMUSG00000033458	Fan1	6030441H18Rik|Mtmr15|mFAN1	FANCD2/FANCI-associated nuclease 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-34501030-4	chr5	34500925	34501125	+	991.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139064, intron 2 of 5)	intron (NM_139064, intron 2 of 5)	12954.0	NM_139064	231130.0	Mm.28615	NM_139064	ENSMUSG00000059866	Tnip2	1810020H16Rik|ABIN-2|AI428870	TNFAIP3 interacting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33898429-2	chr16	33898329	33898529	+	669.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 5 of 14)	intron (NM_001145884, intron 5 of 14)	68609.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-119436588-2	chr8	119436488	119436688	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027950)	promoter-TSS (NM_027950)	-574.0	NM_027950	71839.0	Mm.272357	NM_027950	ENSMUSG00000074063	Osgin1	1700012B18Rik|Okl38	oxidative stress induced growth inhibitor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-50652313-4	chr2	50652266	50652466	+	889.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-257318.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-120067671-2	chr1	120067570	120067770	+	773.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_019432, exon 2 of 2)	3' UTR (NM_019432, exon 2 of 2)	6110.0	NM_019432	170706.0	Mm.24750	NM_019432	ENSMUSG00000050777	Tmem37	AI173373|AW540203|Pr|Pr1	transmembrane protein 37	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80454227-1	chr7	80454127	80454327	+	574.666687	f1_balb.idr	TTS (NM_007550)	TTS (NM_007550)	-48791.0	NM_001081454	18550.0	Mm.5241	NM_011046	ENSMUSG00000030530	Furin	9130404I01Rik|Fur|PACE|Pcsk3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding	0.861387958486941	0.590266027355165	0.579533565121946	1.27228952874177	1.20040181617717	0.592666990674859	0.785370842072776	1.54454437105211	1.01521779741725	0.521550002415407	0.947836760490745
Merged-chr2-22986503-1	chr2	22986403	22986603	+	613.666687	f0_balb.idr	intron (NM_001077190, intron 2 of 10)	intron (NM_001077190, intron 2 of 10)	53738.0	NM_001077192	11308.0	Mm.205647	NM_007380	ENSMUSG00000058835	Abi1	E3B1|NAP1|Ssh3bp1|abi-1	abl-interactor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-142054657-2	chr4	142054557	142054757	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145402, intron 1 of 2)	intron (NM_145402, intron 1 of 2)	-29641.0	NR_027137	100038693.0	Mm.402714	NR_027137	ENSMUSG00000073728	Tmem51os1	Gm10565|Tmem51as1	Tmem51 opposite strand 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-11884937-1	chr11	11884837	11885037	+	880.0	f1_c57bl6.idr	non-coding (NR_045178, exon 4 of 4)	non-coding (NR_045178, exon 4 of 4)	5471.0	NM_016672	13195.0	Mm.12906	NM_016672	ENSMUSG00000020182	Ddc	Aadc	dopa decarboxylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-36144568-2	chr17	36144468	36144668	+	610.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033517)	promoter-TSS (NR_033517)	-450.0	NR_033517	675325.0	Mm.75890	NR_033517	ENSMUSG00000038311	2410017I17Rik	-	RIKEN cDNA 2410017I17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-109903002-3	chr13	109902865	109903065	+	903.8110960000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_035442)	promoter-TSS (NR_035442)	-844.0	NR_035442	100316683.0		NR_035442	ENSMUSG00000084651	Mir1904	Mirn1904|mmu-mir-1904	microRNA 1904	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-79666349-2	chr10	79666249	79666449	+	873.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_013591, exon 4 of 5)	exon (NM_013591, exon 4 of 5)	1790.0	NM_001358785	17123.0	Mm.391556	NM_013591	ENSMUSG00000020310	Madcam1	AV211525|MAdCAM-1	mucosal vascular addressin cell adhesion molecule 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106961676-4	chr11	106961631	106961831	+	670.549988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37794.0	NM_010655	16647.0	Mm.12508	NM_010655	ENSMUSG00000018362	Kpna2	2410044B12Rik|IPOA1|PTAC58|Rch1	karyopherin (importin) alpha 2	protein-coding	0.614686876381277	0.347610554955741	1.24466592460541	0.909634504467343	0.323427956708907	0.349490379209941	0.841668646652609	0.333854733503996	-2.00368226331401	0.280056420246309	1
Merged-chr11-29570931-3	chr11	29570834	29571034	+	784.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163521, intron 9 of 11)	RLTR20C2_MM|LTR|ERVK	-22894.0	NM_001033865	78294.0	Mm.180003	NM_024277	ENSMUSG00000020460	Rps27a	0610006J14Rik|Uba52|Ubb|Ubc	ribosomal protein S27A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126550011-1	chr8	126549911	126550111	+	701.0	f1_balb.idr	Intergenic	RLTR31D_MM|LTR|ERVK	43425.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-38549739-2	chr6	38549639	38549839	+	565.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1595.0	NM_138680	192196.0	Mm.276133	NM_138680	ENSMUSG00000029823	Luc7l2	4930471C18Rik|AA522013|AU015269|CGI59|Cgi74	LUC7-like 2 (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-122593084-2	chr6	122592984	122593184	+	778.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_031159, intron 3 of 7)	B3A|SINE|B2	9360.0	NM_031159	11810.0	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-65430815-4	chr18	65430691	65430891	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172833)	promoter-TSS (NM_172833)	-206.0	NM_172833	240354.0	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	5.8348270699943	6.27545065750756	5.86456291750376	5.51215142016348	5.89037248858509	6.04256134765662	5.68392418177805	5.58755974412078	-0.0910184193891722	0.72168137907541	0.998431161219273
Merged-chr3-84945104-1	chr3	84945004	84945204	+	567.0	f0_balb.idr	intron (NM_001177774, intron 3 of 12)	intron (NM_001177774, intron 3 of 12)	-7107.0	NM_080428	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-156426930-2	chr1	156426911	156427111	+	714.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6096.0	NM_001346967	77352.0	Mm.428709	NM_001033180	ENSMUSG00000026601	Axdnd1	9430070O13Rik|Gm979	axonemal dynein light chain domain containing 1	protein-coding	0.947153320376583	1.21093574151614	1.28305764953724	0.673113620941875	0.954821793810009	1.22142721399601	1.29518407979715	0.674500797661281	0.0403516324759778	0.977808938023665	0.998431161219273
Merged-chr5-112251486-4	chr5	112251426	112251626	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001312884, intron 1 of 4)	intron (NM_001312884, intron 1 of 4)	992.0	NM_001312884	12959.0	Mm.40324	NM_021351	ENSMUSG00000066975	Cryba4	-	crystallin, beta A4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-71005429-2	chr11	71005329	71005529	+	839.1666869999999	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178367)	promoter-TSS (NM_178367)	-997.0	NM_178367	216877.0	Mm.35399	NM_178367	ENSMUSG00000040620	Dhx33	3110057P17Rik|9430096J02Rik|Ddx33	DEAH (Asp-Glu-Ala-His) box polypeptide 33	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-106891318-3	chr9	106891162	106891362	+	874.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr	intron (NM_029103, intron 1 of 3)	intron (NM_029103, intron 1 of 3)	676.0	NM_029103	74840.0	Mm.29778	NM_029103	ENSMUSG00000032575	Manf	3230402M22Rik|AA407711|AA408789|AA673178|Armet|D17914|D18Mgi17	mesencephalic astrocyte-derived neurotrophic factor	protein-coding	1.33451782278125	1.52796766659563	0.938320965325746	1.0687149754022	1.02413533758165	1.42686609284609	0.748159235759668	0.920671190859691	-0.803704898967364	0.552397972559501	0.959523840754686
Merged-chr3-130946154-3	chr3	130945993	130946193	+	766.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-164204.0	NM_010703	16842.0	Mm.255219	NM_010703	ENSMUSG00000027985	Lef1	3000002B05|AI451430|Lef-1	lymphoid enhancer binding factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-152478881-2	chr4	152478781	152478981	+	625.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153424, intron 1 of 29)	intron (NM_153424, intron 1 of 29)	739.0	NM_153424	260305.0	Mm.302496	NM_153424	ENSMUSG00000039577	Nphp4	4930564O18Rik|nmf192	nephronophthisis 4 (juvenile) homolog (human)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-85560413-4	chr2	85560287	85560487	+	911.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18828.0	NM_146437	258429.0	Mm.377497	NM_146437	ENSMUSG00000111179	Olfr996	MOR175-4	olfactory receptor 996	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124380383-4	chr6	124380274	124380474	+	965.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-15888.0	NR_131162	72268.0	Mm.420740	NR_131162		1700027F06Rik	-	RIKEN cDNA 1700027F06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-21654514-3	chr5	21654403	21654603	+	861.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026034, intron 4 of 5)	intron (NM_026034, intron 4 of 5)	8519.0	NM_026034	67211.0	Mm.260782	NM_026034	ENSMUSG00000038525	Armc10	2810037C14Rik|Svh	armadillo repeat containing 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101190944-4	chr15	101190843	101191043	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007395, intron 1 of 8)	MIR3|SINE|MIR	-2926.0	NR_105927	102466774.0		NR_105927	ENSMUSG00000106563	Mir6962	mmu-mir-6962	microRNA 6962	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-119453799-1	chr13	119453699	119453899	+	654.0	f0_balb.idr	intron (NM_145457, intron 9 of 10)	intron (NM_145457, intron 9 of 10)	-8960.0	NR_153825	67392.0	Mm.390641	NM_026127	ENSMUSG00000062822	4833420G17Rik	2210017J06Rik|5730533D17Rik|AW107518|C85193	RIKEN cDNA 4833420G17 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70625232-4	chr8	70625115	70625315	+	696.025024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MERVK26-int|LTR|ERVK	6880.0	NM_011819	23886.0	Mm.31325	NM_011819	ENSMUSG00000038508	Gdf15	MIC-1|NAG-1|SBF	growth differentiation factor 15	protein-coding	4.8920990936173	4.48403562960069	4.55609738304045	5.45340593336639	3.85381497966706	4.6835579977395	4.53823971605919	4.72608656447414	-0.525388395549381	0.17983281059713	0.651328454883588
Merged-chr7-90135604-3	chr7	90135539	90135739	+	867.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360867, intron 1 of 19)	intron (NM_001360867, intron 1 of 19)	5426.0	NM_001252520	233489.0	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115655268-2	chr11	115655168	115655368	+	623.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001313936, intron 3 of 5)	intron (NM_001313936, intron 3 of 5)	-26973.0	NM_001252395	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76657004-4	chr15	76656917	76657117	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001276321)	promoter-TSS (NM_001276321)	-116.0	NM_001276321	54151.0	Mm.247752	NM_019396	ENSMUSG00000053929	Cyhr1	1110031M01Rik|AU042374|Chrp	cysteine and histidine rich 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27290138-2	chr2	27290005	27290205	+	565.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_133905, intron 11 of 29)	intron (NR_133905, intron 11 of 29)	-42802.0	NM_138665	192166.0	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-10844252-4	chr16	10844136	10844336	+	874.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9177.0	NM_001162932	223970.0	Mm.325777	NM_001033278	ENSMUSG00000037991	Rmi2	A630055G03Rik|Gm537|Gm929	RecQ mediated genome instability 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28512422-2	chr17	28512322	28512522	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18439.0	NM_026290	67645.0	Mm.46170	NM_026290	ENSMUSG00000024223	Armc12	4930511I11Rik|AV041658	armadillo repeat containing 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-6366822-4	chr2	6366722	6366922	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181399, intron 1 of 13)	intron (NM_181399, intron 1 of 13)	14086.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-43715502-4	chr11	43715419	43715619	+	945.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164231, intron 2 of 3)	intron (NM_001164231, intron 2 of 3)	32454.0	NM_133795	66827.0	Mm.271974	NM_133795	ENSMUSG00000041278	Ttc1	4833412C19Rik|C79328|TPR1	tetratricopeptide repeat domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-107576865-4	chr8	107576750	107576950	+	715.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11632.0	NM_010817	17463.0	Mm.18347	NM_010817	ENSMUSG00000039067	Psmd7	AW107203|Mov-34|Mov34	proteasome (prosome, macropain) 26S subunit, non-ATPase, 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-86225281-4	chr15	86225195	86225395	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145476, intron 1 of 12)	intron (NM_145476, intron 1 of 12)	10836.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-96475603-4	chr15	96475520	96475720	+	932.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14777.0	NM_028148	72193.0	Mm.324474	NM_028148	ENSMUSG00000033228	Scaf11	1110061H03Rik|2610510E10Rik|AI462454|CASP11|SIP1|SRRP129|Sfrs2ip|Srsf2ip|mKIAA3013	SR-related CTD-associated factor 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101818699-2	chr7	101818599	101818799	+	612.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008887, exon 1 of 3)	exon (NM_008887, exon 1 of 3)	386.0	NM_008887	11859.0	Mm.5028	NM_008887	ENSMUSG00000007946	Phox2a	Arix|Phox2|Pmx2|Pmx2a|Px2a	paired-like homeobox 2a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-90426976-2	chr7	90426876	90427076	+	829.333374	f1_balb.idr|f1_c57bl6.idr	exon (NM_027298, exon 1 of 1)	exon (NM_027298, exon 1 of 1)	664.0	NM_027298	70054.0	Mm.307198	NM_027298	ENSMUSG00000044362	Ccdc89	1700019B01Rik|AU022100|BOIP	coiled-coil domain containing 89	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-22122278-3	chr9	22122163	22122363	+	585.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5068.0	NM_001357312	66126.0	Mm.29801	NM_170777	ENSMUSG00000013822	Elof1	1110011K10Rik	ELF1 homolog, elongation factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-50228192-2	chr11	50228092	50228292	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145926, intron 1 of 14)	intron (NM_145926, intron 1 of 14)	2857.0	NM_145926	103534.0	Mm.86759	NM_145926	ENSMUSG00000036620	Mgat4b	AA407995|GnTIVb	mannoside acetylglucosaminyltransferase 4, isoenzyme B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-35020301-1	chr7	35020201	35020401	+	698.0	f1_c57bl6.idr	intron (NM_008820, intron 9 of 14)	intron (NM_008820, intron 9 of 14)	36265.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128297048-4	chr2	128296945	128297145	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	132306.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-103745502-4	chr3	103745398	103745598	+	888.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010432, intron 14 of 15)	intron (NM_010432, intron 14 of 15)	-7497.0	NM_133859	99543.0	Mm.211535	NM_133859	ENSMUSG00000027848	Olfml3	2810002E22Rik|AI115209|AW550633|HNOEL-iso|ONT3|mONT3	olfactomedin-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-123283144-3	chr8	123283041	123283241	+	964.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016925, intron 28 of 42)	B1F1|SINE|Alu	-28919.0	NM_028200	72325.0	Mm.276193	NM_028200	ENSMUSG00000001062	Vps9d1	1300018I17Rik|2410004N05Rik|5DOS1|Vsp9d1	VPS9 domain containing 1	protein-coding	3.1418590070196	2.84896709581333	1.96027003275833	3.40192580185952	4.15060857964341	3.47276943575801	3.03513601933288	4.54744105360669	1.50306905861038	0.017511514918111	0.162450893804765
Merged-chr11-107147518-3	chr11	107147418	107147618	+	639.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16_Mm|LTR|ERVK	-9890.0	NM_001308498	105734734.0		NM_001308498		Gm11715	-	predicted gene 11715	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-31151309-2	chr8	31151213	31151413	+	746.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001199988, exon 1 of 8)	exon (NM_001199988, exon 1 of 8)	997.0	NR_103719	234138.0	Mm.349800	NM_144927	ENSMUSG00000031577	Tti2	-	TELO2 interacting protein 2	protein-coding	-1.32440223303897	-1.29339468673833	-0.717877708899544	-1.31276353204239	-1.32392690786997	-1.29109028300231	-1.30162128075409	-1.31119997543009	-2.49510383040271	0.470258445164311	1
Merged-chr17-4996515-4	chr17	4996462	4996662	+	976.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 1 of 19)	CpG-5917	1488.0	NM_001085355	239985.0	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-100637133-8	chr15	100636982	100637182	+	830.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_174992)	promoter-TSS (NM_174992)	-142.0	NM_001033872	207818.0	Mm.26282	NM_174992	ENSMUSG00000053559	Smagp	-	small cell adhesion glycoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28290792-2	chr17	28290692	28290892	+	766.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011145, intron 3 of 7)	intron (NM_011145, intron 3 of 7)	-17170.0	NR_039557	100628577.0		NR_039557	ENSMUSG00000093061	Mir5098	mmu-mir-5098|mu-mir-5098	microRNA 5098	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71196274-2	chr17	71196174	71196374	+	695.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_022882, intron 1 of 19)	MER20|DNA|hAT-Charlie	-8380.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	0.204825150815219	0.231327473205361	0.973407633452097	0.699488661843956	0.206508981988665	0.233247055543981	0.224651841024856	1.19892218861977	-0.0549441354118104	0.978364856713495	1
Merged-chr3-108151882-4	chr3	108151812	108152012	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001305461, exon 2 of 3)	5' UTR (NM_001305461, exon 2 of 3)	3020.0	NM_001305461	229714.0	Mm.73666	NM_175470	ENSMUSG00000046793	Gpr61	-	G protein-coupled receptor 61	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-102780094-2	chr9	102779994	102780194	+	556.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40446.0	NR_033301	434510.0	Mm.387937	NM_001034892	ENSMUSG00000093812	Gm5627	EG434510	predicted gene 5627	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35052557-2	chr17	35052490	35052690	+	656.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_033444, intron 2 of 5)	intron (NM_033444, intron 2 of 5)	2347.0	NM_033444	114584.0	Mm.29524	NM_033444	ENSMUSG00000007041	Clic1	Clcp|G6	chloride intracellular channel 1	protein-coding	2.99316633704647	2.57899598855832	2.49240130292864	3.33364723988193	1.87608829901193	2.59794542626323	2.37160353602844	2.85748294746064	-0.845408368236405	0.261714336530595	0.763011973844341
Merged-chr2-3336062-4	chr2	3335933	3336133	+	926.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030063)	promoter-TSS (NM_030063)	-135.0	NM_030063	78245.0	Mm.99733	NM_030063	ENSMUSG00000026644	Acbd7	9230116B18Rik	acyl-Coenzyme A binding domain containing 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-84677488-2	chr18	84677388	84677588	+	909.3000490000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_023149, intron 4 of 11)	intron (NM_023149, intron 4 of 11)	4571.0	NM_001289531	66054.0	Mm.29646	NM_023149	ENSMUSG00000024644	Cndp2	0610010E05Rik|C76600|Cn2|Dip-2|Pep-1|Pep1	CNDP dipeptidase 2 (metallopeptidase M20 family)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-122137918-2	chr7	122137818	122138018	+	613.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_021608, intron 3 of 5)	ID_B1|SINE|B4	4877.0	NM_021608	59288.0	Mm.478285	NM_021608	ENSMUSG00000030868	Dctn5	4930427E12Rik|C78178|b2b315Clo	dynactin 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111540091-2	chr12	111539991	111540191	+	742.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033168)	promoter-TSS (NR_033168)	-855.0	NR_033168	100316932.0	Mm.484709	NR_033168	ENSMUSG00000064493	Snora28	MBI-13	small nucleolar RNA, H/ACA box 28	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95758632-3	chr3	95758528	95758728	+	936.361084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3651.0	NR_151588	71807.0	Mm.271754	NM_027931	ENSMUSG00000028107	Tars2	2610024N01Rik|AI429208|Tarsl1|thrRS	threonyl-tRNA synthetase 2, mitochondrial (putative)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-77821706-2	chr11	77821606	77821806	+	672.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291215, intron 11 of 41)	intron (NM_001291215, intron 11 of 41)	20408.0	NM_001291215	360013.0	Mm.341248	NM_011586	ENSMUSG00000000631	Myo18a	MAJN|MyoPDZ|MysPDZ|SP-R210	myosin XVIIIA	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-100834999-4	chr10	100834898	100835098	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-93363.0	NR_152765	102639396.0	Mm.404529	NR_152765		Gm35722	-	predicted gene, 35722	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-130900012-3	chr4	130899893	130900093	+	888.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13341.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-25623143-4	chr15	25623030	25623230	+	990.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019472, intron 1 of 40)	CpG	580.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-119050155-4	chr10	119050050	119050250	+	952.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_152787, exon 2 of 4)	non-coding (NR_152787, exon 2 of 4)	349.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-144256719-1	chr6	144256619	144256819	+	560.0	f1_c57bl6.idr	Intergenic	Intergenic	-47151.0	NM_001243163	20678.0	Mm.1752	NM_011444	ENSMUSG00000041540	Sox5	A730017D01Rik|AI528773	SRY (sex determining region Y)-box 5	protein-coding	-0.186713222608074	-0.172465577894752	0.384260055237354	-0.180740242921044	0.082749759711163	-0.171411521424885	0.395231023973191	-0.180111229720497	0.516352744375503	0.828200122389324	1
Merged-chr15-64107424-2	chr15	64107325	64107525	+	666.275024	f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 24 of 28)	B1_Mus1|SINE|Alu	-46977.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0.717280109916043	0.757988289732628	1.61226440735275	1.35111632172377	0.719887831339949	1.3316844823624	1.52479632133642	1.23644141763243	0.234739068044495	0.873903073872482	0.998431161219273
Merged-chr19-47089838-3	chr19	47089740	47089940	+	853.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011053)	promoter-TSS (NM_011053)	785.0	NM_023211	66477.0	Mm.29722	NM_023211	ENSMUSG00000071528	Usmg5	2010301L15Rik	upregulated during skeletal muscle growth 5	protein-coding	0.584983704696533	1.38607456400926	1.8237343992017	0.604834512218596	1.08282073847502	0.634485810272162	1.56998224492527	0.606883550255126	-0.654270107912462	0.68431664912687	0.996533206832645
Merged-chr5-105875042-1	chr5	105874942	105875142	+	555.0	f1_c57bl6.idr	Intergenic	Intergenic	-1526.0	NR_030777	54367.0	Mm.248876	NM_018759	ENSMUSG00000029290	Zfp326	5730470H14Rik|ZAN75|Znf326	zinc finger protein 326	protein-coding	-0.022735034252201	-0.0764631591956548	-0.0955850157266935	-0.25916169106272	-0.131312030044008	-0.251830215501678	-0.255531922631876	0.235620450445895	0.309802514138178	0.887287692612016	1
Merged-chr11-11819430-2	chr11	11819330	11819530	+	671.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016672, intron 12 of 14)	intron (NM_016672, intron 12 of 14)	-10468.0	NM_001163360	60530.0	Mm.236114	NM_021891	ENSMUSG00000035455	Fignl1	-	fidgetin-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-84011663-3	chr12	84011563	84011763	+	892.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012006, intron 1 of 2)	intron (NM_012006, intron 1 of 2)	2161.0	NM_012006	26897.0	Mm.1978	NM_012006	ENSMUSG00000072949	Acot1	ACH2|CTE-1|CTE-I|Cte1|D12Ucla1	acyl-CoA thioesterase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-69400155-4	chr18	69400081	69400281	+	901.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 3 of 19)	intron (NM_001361128, intron 3 of 19)	54021.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	2.98654281854694	1.85923584980623	2.13201051798267	2.77112895843006	2.49660893979889	1.3698477442867	1.59730164091948	2.53638580590327	-0.89240436994972	0.345188891840026	0.845824907532742
Merged-chr6-88066867-4	chr6	88066772	88066972	+	895.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	-17601.0	NM_133933	103963.0	Mm.188544	NM_133933	ENSMUSG00000030062	Rpn1	AU018702|D6Wsu137e|Rpn-1	ribophorin I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-25098256-2	chr8	25098156	25098356	+	608.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_031257, intron 1 of 11)	intron (NM_031257, intron 1 of 11)	3555.0	NM_031257	83436.0	Mm.261122	NM_031257	ENSMUSG00000031557	Plekha2	6430512N22Rik|AI851530|AU041791|TAPP2|W91773	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-128235765-3	chr8	128235655	128235855	+	802.766663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42470.0	NR_105822	102465212.0		NR_105822	ENSMUSG00000099326	Mir21c	Gm28013|mmu-mir-21c	microRNA 21c	ncRNA	2.4139387228738	2.9947374400381	2.28669076877954	2.08115577127863	2.11601933298638	3.23607448927503	1.58671904863771	1.27697125048841	-0.375343278227709	0.694695816648297	0.997836418558882
Merged-chr16-32001366-2	chr16	32001266	32001466	+	554.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357087, intron 1 of 9)	intron (NM_001357087, intron 1 of 9)	1921.0	NM_001357087	320213.0	Mm.152890	NM_023801	ENSMUSG00000022772	Senp5	6230429P13Rik|A730063F07Rik|AI851888|BB189556|SMT3IP3	SUMO/sentrin specific peptidase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-56773701-3	chr19	56773637	56773837	+	962.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	39946.0	NM_170757	213993.0	Mm.469677	NM_170757	ENSMUSG00000035173	Ccdc186	1810028B20Rik|A630007B06Rik|AI159700|Otg1	coiled-coil domain containing 186	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81848501-4	chr15	81848407	81848607	+	952.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_020507, exon 2 of 2)	3' UTR (NM_020507, exon 2 of 2)	9819.0	NM_020507	57259.0	Mm.323595	NM_020507	ENSMUSG00000048546	Tob2	2900090N22Rik|4930545K18Rik|AV071822|mKIAA1663	transducer of ERBB2, 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-127762647-4	chr3	127762539	127762739	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027808, intron 1 of 13)	intron (NM_027808, intron 1 of 13)	17888.0	NM_027808	71481.0	Mm.158704	NM_027808	ENSMUSG00000028028	Alpk1	8430410J10Rik|LAK	alpha-kinase 1	protein-coding	5.37268337798506	4.76767765100214	5.02482531679347	5.00839104695434	5.36316212974334	5.76744367353103	5.89354112481602	6.05224221300499	0.821564459884719	0.00455535371626789	0.0623500486702404
Merged-chr4-133614595-4	chr4	133614469	133614669	+	924.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001017968, intron 3 of 7)	intron (NM_001017968, intron 3 of 7)	-12401.0	NM_018754	55948.0	Mm.44482	NM_018754	ENSMUSG00000047281	Sfn	Er|Mme1|Ywhas	stratifin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59049024-4	chr15	59048924	59049124	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144800, intron 3 of 14)	intron (NM_144800, intron 3 of 14)	33002.0	NM_001146180	211401.0	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5610633-2	chr17	5610533	5610733	+	686.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	118033.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70084929-2	chr8	70084829	70085029	+	623.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_177900, exon 3 of 5)	exon (NM_177900, exon 3 of 5)	1400.0	NM_177900	330790.0	Mm.152048	NM_177900	ENSMUSG00000007594	Hapln4	9330174O11|Bral2|Lpr4	hyaluronan and proteoglycan link protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-65075975-2	chr2	65075875	65076075	+	557.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53209.0	NM_016719	50915.0	Mm.214554	NM_016719	ENSMUSG00000026888	Grb14	AI505286	growth factor receptor bound protein 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-43775454-4	chr13	43775325	43775525	+	931.145874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9687.0	NM_009856	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-69029297-3	chr14	69029195	69029395	+	682.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009285)	promoter-TSS (NM_009285)	6.0	NM_009285	20855.0	Mm.20911	NM_009285	ENSMUSG00000014813	Stc1	Stc	stanniocalcin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-136199094-4	chr5	136199007	136199207	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025774)	promoter-TSS (NM_025774)	-153.0	NM_025774	66801.0	Mm.425295	NM_025774	ENSMUSG00000039737	Prkrip1	8430424D23Rik|C114	Prkr interacting protein 1 (IL11 inducible)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-110686995-4	chr12	110686892	110687092	+	875.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	-4373.0	NM_025488	66323.0	Mm.273316	NM_025488	ENSMUSG00000056508	1700001K19Rik	-	RIKEN cDNA 1700001K19 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52929642-4	chr13	52929533	52929733	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016709)	promoter-TSS (NM_016709)	44.0	NM_016709	11992.0	Mm.252034	NM_016709	ENSMUSG00000021460	Auh	C77140|W91705	AU RNA binding protein/enoyl-coenzyme A hydratase	protein-coding	5.73720122988975	5.43715427300782	5.34156797204291	5.73313392975107	4.6723096382914	5.3713358658715	3.94638481874768	5.20417269210056	-0.790876026020722	0.0192542456573803	0.17518637972491
Merged-chr7-28807867-3	chr7	28807742	28807942	+	867.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3048.0	NM_177301	15388.0	Mm.9043	NM_177301	ENSMUSG00000015165	Hnrnpl	C79783|D830027H13Rik|Hnrpl	heterogeneous nuclear ribonucleoprotein L	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6943043-2	chr19	6942943	6943143	+	870.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177361)	promoter-TSS (NM_001177361)	481.0	NM_001285453	12015.0	Mm.4387	NM_007522	ENSMUSG00000024959	Bad	AI325008|Bbc2	BCL2-associated agonist of cell death	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-72786031-3	chr2	72785927	72786127	+	995.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_102349, intron 5 of 5)	intron (NR_102349, intron 5 of 5)	27690.0	NR_102348	76218.0	Mm.75260	NR_102348	ENSMUSG00000085427	6430710C18Rik	5033406J01Rik	RIKEN cDNA 6430710C18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-13884763-1	chr10	13884663	13884863	+	547.0	f0_balb.idr	Intergenic	MTC|LTR|ERVL-MaLR	13483.0	NR_152745	102634635.0		NR_152745	ENSMUSG00000112172	Gm32172	-	predicted gene, 32172	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-21139420-4	chr2	21139319	21139519	+	956.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	65946.0	NM_027728	71233.0	Mm.27658	NM_027728	ENSMUSG00000026679	Enkur	4933434I06Rik|AU016229	enkurin, TRPC channel interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-73281815-2	chr11	73281715	73281915	+	889.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145099, intron 7 of 17)	intron (NM_145099, intron 7 of 17)	14195.0	NM_145099	246788.0	Mm.75196	NM_145099	ENSMUSG00000043029	Trpv3	1110036I10Rik|AI644701|Nh|VRL3	transient receptor potential cation channel, subfamily V, member 3	protein-coding	0.974896710665061	0.836290072146064	1.66044532596239	2.04908969056126	0.784113960647375	0.840223683724585	1.78656295576122	1.61499884143172	-0.462351560003096	0.742987902321576	0.998431161219273
Merged-chr19-3829868-2	chr19	3829768	3829968	+	823.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-21905.0	NM_001271496	12660.0	Mm.225505	NM_013490	ENSMUSG00000024843	Chka	CK|CK/EK-alpha|Chetk-alpha|Chk|ChoK|EK|EtnK-alpha	choline kinase alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-43804344-4	chr1	43804248	43804448	+	787.229187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026430, intron 4 of 14)	Lx8|LINE|L1	23360.0	NM_026430	67883.0	Mm.387202	NM_026430	ENSMUSG00000057363	Uxs1	1600025I13Rik|AI451869|AI649125|AW550562	UDP-glucuronate decarboxylase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-157081987-6	chr2	157081848	157082048	+	954.658325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2683.0	NM_001164663	320706.0	Mm.79466	NM_001164663	ENSMUSG00000055485	Soga1	9830001H06Rik|AI426038|D430036N24Rik|Soga	suppressor of glucose, autophagy associated 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-117438300-4	chr6	117438192	117438392	+	882.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56943.0	NR_152214	100126203.0	Mm.217172	NR_152214		6820426E19Rik	Gm43983	RIKEN cDNA 6820426E19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-60894373-4	chr18	60894280	60894480	+	873.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1O|LTR|ERVL-MaLR	-17860.0	NM_001038499	545260.0	Mm.20147	NM_001038499	ENSMUSG00000036412	Arsi	BC020108	arylsulfatase i	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-60811211-4	chr11	60811087	60811287	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009171)	promoter-TSS (NM_009171)	78.0	NM_009171	20425.0	Mm.364956	NM_009171	ENSMUSG00000020534	Shmt1	AI324848|AI385541|C81125|Shmt|mshmt|mshmt1|mshmt2	serine hydroxymethyltransferase 1 (soluble)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44288299-2	chr9	44288199	44288399	+	814.299988	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138955)	promoter-TSS (NM_138955)	-55.0	NM_138955	192663.0	Mm.101876	NM_138955	ENSMUSG00000032131	Abcg4	6430517O04Rik	ATP binding cassette subfamily G member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-24148562-2	chr10	24148462	24148662	+	600.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358563)	promoter-TSS (NM_001358563)	-727.0	NM_001358563	53331.0	Mm.248042	NM_016797	ENSMUSG00000019998	Stx7	AI315064|AI317144|AW107239|Syn7	syntaxin 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-59559807-4	chr11	59559691	59559891	+	857.158325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153314, intron 7 of 9)	intron (NR_153314, intron 7 of 9)	11947.0	NM_001011789	257962.0	Mm.377316	NM_001011789	ENSMUSG00000059610	Olfr222	MOR256-45P	olfactory receptor 222	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-135523267-4	chr1	135523152	135523352	+	902.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173437, intron 3 of 28)	ORR1E|LTR|ERVL-MaLR	62103.0	NM_173437	215690.0	Mm.34977	NM_173437	ENSMUSG00000009418	Nav1	9530089B19|9930003A20Rik|C230080M11Rik|Gm38399|Pomfil3|Unc53h1|mKIAA1151|steerin-1	neuron navigator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-59208190-4	chr3	59208101	59208301	+	905.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028808, exon 2 of 2)	3' UTR (NM_028808, exon 2 of 2)	2681.0	NM_028808	74191.0	Mm.90067	NM_028808	ENSMUSG00000036362	P2ry13	2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174	purinergic receptor P2Y, G-protein coupled 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-102405980-7	chr15	102405869	102406069	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013672)	promoter-TSS (NM_013672)	-347.0	NM_013672	20683.0	Mm.4618	NM_013672	ENSMUSG00000001280	Sp1	1110003E12Rik|AA450830|AI845540|Sp1-1	trans-acting transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-85810320-2	chr11	85810220	85810420	+	701.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_077059, intron 1 of 4)	intron (NR_077059, intron 1 of 4)	22068.0	NR_077059	69909.0	Mm.440214	NR_077059	ENSMUSG00000087013	2610027K06Rik	-	RIKEN cDNA 2610027K06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-132408341-2	chr6	132408244	132408444	+	678.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MMERVK10C-int|LTR|ERVK	-44209.0	NM_053251	114600.0	Mm.428480	NM_053251		Gm4736	EG114600|Mp4|Mp6	predicted gene 4736	protein-coding	1.99450013164092	2.90828666881984	2.18596489879465	1.05053207193681	1.8977530877966	2.70003534025743	1.08420972855003	1.05521223210717	-0.712134345358104	0.547403611183746	0.957826773868235
Merged-chr2-153345674-4	chr2	153345589	153345789	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039939)	promoter-TSS (NM_001039939)	121.0	NR_040318	72326.0	Mm.400102	NR_040318	ENSMUSG00000073236	2500004C02Rik	-	RIKEN cDNA 2500004C02 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-103967877-2	chr11	103967777	103967977	+	796.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_007477, intron 1 of 4)	intron (NM_007477, intron 1 of 4)	1006.0	NM_007477	11841.0	Mm.5061	NM_007477	ENSMUSG00000062421	Arf2	-	ADP-ribosylation factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81830787-2	chr15	81830687	81830887	+	738.299988	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	19373.0	NM_017376	21685.0	Mm.270278	NM_017376	ENSMUSG00000022389	Tef	2310028D20Rik	thyrotroph embryonic factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-134458331-4	chr1	134458232	134458432	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311136, intron 1 of 11)	intron (NM_001311136, intron 1 of 11)	2801.0	NM_001311136	240756.0	Mm.87398	NM_153128	ENSMUSG00000026455	Klhl12	C3ip1	kelch-like 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-96274188-4	chr10	96274104	96274304	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47997.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-192752860-3	chr1	192752750	192752950	+	596.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144881, intron 2 of 11)	intron (NM_144881, intron 2 of 11)	18369.0	NM_144881	226861.0	Mm.145857	NM_144881	ENSMUSG00000037375	Hhat	2810432O22Rik|AI462858|AP-2CRE|Skn|Tg(TFAP2A-cre)1Will	hedgehog acyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-101325526-3	chr4	101325418	101325618	+	937.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21509.0	NR_029537	387143.0		NR_029537	ENSMUSG00000065451	Mir101a	Mirn101|Mirn101a|miR-101|mir-101a	microRNA 101a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-51270615-4	chr3	51270518	51270718	+	959.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023502, intron 4 of 9)	intron (NM_023502, intron 4 of 9)	-6143.0	NR_073429	67746.0	Mm.441177	NR_073429	ENSMUSG00000087440	4930577N17Rik	-	RIKEN cDNA 4930577N17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53086395-2	chr4	53086295	53086495	+	648.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 11 of 49)	intron (NM_013454, intron 11 of 49)	73500.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-36732170-2	chr13	36732070	36732270	+	628.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153529, intron 1 of 2)	intron (NM_153529, intron 1 of 2)	2307.0	NM_153529	68404.0	Mm.232930	NM_153529	ENSMUSG00000039114	Nrn1	0710008J23Rik|Cpg15|Nrn	neuritin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-58224090-2	chr10	58223990	58224190	+	729.8000490000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8585.0	NM_001081954	664783.0	Mm.482575	NM_001081954		Dux	AW822073|Dux4|Duxbl|EG664783	double homeobox	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-73221766-4	chr6	73221671	73221871	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164669)	promoter-TSS (NM_001164669)	-140.0	NM_001164669	330355.0	Mm.333166	NM_001164669	ENSMUSG00000052861	Dnah6	9830168K20|A730004I20Rik|Dnahc6|mKIAA1697|mdhc6	dynein, axonemal, heavy chain 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-104565364-3	chr11	104565258	104565458	+	667.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010858, intron 2 of 8)	intron (NM_010858, intron 2 of 8)	-3160.0	NR_130177	100415912.0	Mm.446786	NR_130177		Gm11665	Gm11664	predicted gene 11665	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133056717-4	chr4	133056576	133056776	+	786.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146155, intron 3 of 6)	intron (NM_146155, intron 3 of 6)	45170.0	NM_146155	230793.0	Mm.31816	NM_146155	ENSMUSG00000037692	Ahdc1	D030015G18Rik	AT hook, DNA binding motif, containing 1	protein-coding	-1.84297643846673	-1.8130099360596	-1.82207205372894	-1.6869274651563	-1.84087284540582	-1.81104613735712	-1.82002058892457	-1.6855950118199	0.037684011990387	0.991491645451152	1
Merged-chr18-23902011-2	chr18	23901911	23902111	+	614.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52677.0	NM_027007	69256.0	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-40684743-2	chr19	40684643	40684843	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009848, intron 1 of 9)	intron (NM_009848, intron 1 of 9)	24973.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-40958943-2	chr3	40958843	40959043	+	954.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001040399, intron 1 of 9)	RMER1B|Other|Other	8312.0	NM_001040399	214048.0	Mm.46782	NM_027663	ENSMUSG00000025762	Larp1b	1700108L22Rik|4933421B21Rik|AA690246|Larp2	La ribonucleoprotein domain family, member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-78416904-2	chr17	78416804	78417004	+	603.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360407, intron 1 of 9)	intron (NM_001360407, intron 1 of 9)	1248.0	NM_001285949	225020.0	Mm.236835	NM_199448	ENSMUSG00000056121	Fez2	9030616F16|D17Ertd315e	fasciculation and elongation protein zeta 2 (zygin II)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-25011146-4	chr16	25011047	25011247	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48492.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-100799204-1	chr6	100799104	100799304	+	996.0	f1_c57bl6.idr	intron (NM_198612, intron 6 of 6)	intron (NM_198612, intron 6 of 6)	-34434.0	NM_182939	232314.0	Mm.27223	NM_182939	ENSMUSG00000052144	Ppp4r2	BE691708|C230060M08Rik	protein phosphatase 4, regulatory subunit 2	protein-coding	-1.84243072036643	-1.81277471750326	-1.82174293754767	-1.68799865697732	-1.69923788026336	-1.81083126680782	-1.81971272910741	-1.82779105346464	0.037684011990387	0.991491645451152	1
Merged-chr1-57978402-2	chr1	57978302	57978502	+	594.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-6938.0	NM_001177867	68549.0	Mm.32800	NM_199007	ENSMUSG00000026039	Sgo2a	1110007N04Rik|4932411A20Rik|5730576N04Rik|AU018846|AV008062|D1Ertd8e|Sgol2|Sgol2a|Tripin	shugoshin 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-36994373-4	chr8	36994286	36994486	+	943.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001039220, exon 1 of 1)	exon (NM_001039220, exon 1 of 1)	811.0	NM_001039220	621080.0	Mm.373292	NM_001039220	ENSMUSG00000074384	AI429214	-	expressed sequence AI429214	protein-coding	3.32415908331406	2.64039906064391	2.54060971417655	1.5661957962149	3.98323131179028	3.42374953026151	4.15338927014607	3.88751144847919	1.924743875089	0.00295058512124055	0.0449633195825286
Merged-chr15-93089527-2	chr15	93089427	93089627	+	696.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	185652.0	NM_001357006	223827.0	Mm.22819	NM_001033275	ENSMUSG00000036197	Gxylt1	Glt8d3|Gm1228|Gm87	glucoside xylosyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-3199771-3	chr9	3199652	3199852	+	821.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027988)	promoter-TSS (NR_027988)	61.0	NR_027988	114673.0	Mm.422774	NM_053265	ENSMUSG00000042360	4930433N12Rik	-	RIKEN cDNA 4930433N12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-31750683-2	chr16	31750583	31750783	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357281, intron 2 of 22)	intron (NM_001357281, intron 2 of 22)	-3667.0	NM_001252436	13383.0	Mm.382	NM_007862	ENSMUSG00000022770	Dlg1	B130052P05Rik|Dlgh1|E-dlg/SAP97|SAP-97|SAP97|mKIAA4187	discs large MAGUK scaffold protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-63545854-4	chr15	63545716	63545916	+	961.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19C|LTR|ERVK	-66208.0	NR_045279	432958.0	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	3.11933803209478	3.88652558322287	3.97052731019868	3.08246670454057	4.54277079731793	4.62307663873679	3.78623381941563	3.94471264807876	0.982271533474727	0.047368062226475	0.315659665692088
Merged-chr16-50538026-3	chr16	50537918	50538118	+	803.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040379, intron 2 of 5)	intron (NR_040379, intron 2 of 5)	9516.0	NR_040379	619312.0	Mm.427671	NR_040379		G730013B05Rik	linc-Cblb|linc1610	RIKEN cDNA G730013B05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-92702767-1	chr13	92702667	92702867	+	660.0	f0_balb.idr	intron (NM_172588, intron 9 of 11)	intron (NM_172588, intron 9 of 11)	91629.0	NM_172588	218442.0	Mm.297970	NM_172588	ENSMUSG00000021703	Serinc5	A130038L21Rik|AIGP3|C86123|TPO1	serine incorporator 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-38635110-4	chr13	38635017	38635217	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_139063)	promoter-TSS (NM_139063)	-8.0	NM_139063	17828.0	Mm.261554	NM_139063	ENSMUSG00000038982	Bloc1s5	1810074A19Rik|Muted|mu	biogenesis of lysosomal organelles complex-1, subunit 5, muted	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-71875460-3	chr7	71875365	71875565	+	868.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-34230.0	NR_130995	78156.0	Mm.243818	NR_130995	ENSMUSG00000108669	4930441H08Rik	-	RIKEN cDNA 4930441H08 gene	ncRNA	2.2577702092059	1.3674425273664	1.32472790879037	2.12315123462466	2.94621599518786	2.57562715250442	3.48619739663708	2.61981197969652	2.37516613684482	0.00754532435862262	0.0892633895823801
Merged-chr5-92690788-1	chr5	92690688	92690888	+	671.5	f0_balb.idr	intron (NM_015756, intron 1 of 10)	intron (NM_015756, intron 1 of 10)	7353.0	NM_015756	27428.0	Mm.46014	NM_015756	ENSMUSG00000029381	Shroom3	AL022960|D5Ertd287e|Shrm|Shrm3	shroom family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-95648043-4	chr16	95647963	95648163	+	762.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54344.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-111029728-2	chr8	111029635	111029835	+	701.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001190786, intron 1 of 11)	RLTR31_Mm|LTR|ERVK	-1965.0	NM_001190800	234733.0	Mm.482176	NM_172284	ENSMUSG00000033658	Ddx19b	2810457M08Rik|4921519L13Rik|AW260119	DEAD (Asp-Glu-Ala-Asp) box polypeptide 19b	protein-coding	1.38995860902869	1.8199052793482	1.6416789239902	0.820479998159992	0.99001191883147	1.0935422026786	0.836768424463544	1.87949754845444	-0.647445168971607	0.630744626608584	0.981465575333797
Merged-chr6-38950520-4	chr6	38950408	38950608	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 2 of 12)	intron (NM_011539, intron 2 of 12)	31522.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129301512-3	chr2	129301533	129301733	+	960.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010554, intron 6 of 6)	intron (NM_010554, intron 6 of 6)	4263.0	NR_040371	100503468.0	Mm.446943	NR_040371	ENSMUSG00000085498	Gm14023	-	predicted gene 14023	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-95533849-2	chr2	95533749	95533949	+	817.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_A|LINE|L1	-784320.0	NM_001289742	241568.0	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-44801103-2	chr16	44801003	44801203	+	720.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19625.0	NM_207244	239849.0	Mm.445045	NM_207244	ENSMUSG00000062082	Cd200r4	F630107N04Rik|MCD200RLa	CD200 receptor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-90111852-4	chr3	90111754	90111954	+	998.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029937, intron 2 of 39)	intron (NM_029937, intron 2 of 39)	7722.0	NM_029937	77595.0	Mm.159949	NM_029937	ENSMUSG00000027939	Nup210l	4930548O11Rik|R26-EGFP|Tg(Gt(ROSA)26Sor-EGFP)130910Eps	nucleoporin 210-like	protein-coding	2.06273136520844	2.36094876592451	3.27542186994881	1.47125927216005	3.61367569679885	3.79484927879319	4.09792019988007	2.91109299571133	2.01437883018752	0.00558500583892308	0.0725728159444756
Merged-chr7-125574003-2	chr7	125573903	125574103	+	697.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001008700, intron 8 of 10)	ID_B1|SINE|B4	21721.0	NM_001008700	16190.0	Mm.233802	NM_010557	ENSMUSG00000030748	Il4ra	CD124|Il4r	interleukin 4 receptor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-32480442-2	chr9	32480361	32480561	+	609.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008026, intron 1 of 8)	intron (NM_008026, intron 1 of 8)	60991.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-13945430-4	chr17	13945301	13945501	+	993.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2972.0	NM_001122977	635895.0	Mm.388844	NM_001122977	ENSMUSG00000067941	Gm7168	EG635895	predicted gene 7168	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-103230449-4	chr9	103230330	103230530	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133977)	promoter-TSS (NM_133977)	-144.0	NM_133977	22041.0	Mm.37214	NM_133977	ENSMUSG00000032554	Trf	AI266983|Cd176|HP|Tf|Tfn|hpx	transferrin	protein-coding	-0.643947544515173	-0.633099188729109	-0.0641239051495042	-0.639399037742312	-0.643271268608958	-0.632296893744128	-0.168615286170003	-0.638920067900268	-0.377261004685945	0.896083238598253	1
Merged-chr7-24406376-2	chr7	24406276	24406476	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028047, intron 5 of 13)	PB1D11|SINE|Alu	6748.0	NM_028047	71997.0	Mm.150977	NM_028047	ENSMUSG00000002210	Smg9	1500002O20Rik|AI429693|N28092	smg-9 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-108474769-3	chr9	108474683	108474883	+	935.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5079.0	NM_008483	16779.0	Mm.27560	NM_008483	ENSMUSG00000052911	Lamb2	AW211941|Lamb-2|Lams|npht	laminin, beta 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132944922-4	chr4	132944786	132944986	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MARNA|DNA|TcMar-Mariner	-22335.0	NM_001163792	230789.0	Mm.11473	NM_145553	ENSMUSG00000028878	Fam76a	-	family with sequence similarity 76, member A	protein-coding	0.239218139178043	-0.10530832247029	-0.109869871615668	0.397270466450184	0.428086082110452	-0.104278138889155	-0.108864993606365	-0.112767135942914	-0.570775633679514	0.808196234153565	1
Merged-chr1-154104388-4	chr1	154104285	154104485	+	981.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD-int|LTR|ERVL-MaLR	-96802.0	NM_001204908	100503355.0	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	Gm10178|Gm203	zinc finger protein 648	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-59464833-3	chr1	59464736	59464936	+	749.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17311.0	NM_008057	14369.0	Mm.297906	NM_008057	ENSMUSG00000041075	Fzd7	Fz7	frizzled class receptor 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-91750942-3	chr12	91750830	91751030	+	655.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 1 of 6)	MLT1N2|LTR|ERVL-MaLR	35506.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-56943832-3	chr1	56943681	56943881	+	653.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358580, intron 4 of 11)	intron (NM_001358580, intron 4 of 11)	27553.0	NM_139146	212712.0	Mm.145599	NM_139146	ENSMUSG00000038331	Satb2	mKIAA1034	special AT-rich sequence binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-86695786-4	chr9	86695623	86695823	+	906.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008615, exon 1 of 14)	exon (NM_008615, exon 1 of 14)	191.0	NM_008615	17436.0	Mm.148155	NM_008615	ENSMUSG00000032418	Me1	D9Ertd267e|Mdh-1|Mod-1|Mod1	malic enzyme 1, NADP(+)-dependent, cytosolic	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-127123506-1	chr3	127123406	127123606	+	590.0	f1_c57bl6.idr	intron (NM_001327938, intron 1 of 47)	intron (NM_001327938, intron 1 of 47)	-37799.0	NR_105030	100862268.0	Mm.444603	NR_105029	ENSMUSG00000097456	LOC100862268	-	uncharacterized LOC100862268	ncRNA	2.72847138812515	2.05819730360281	1.1228490309816	1.0783923005552	0.553311418172439	0.634464385810135	0.609479708729311	0.587132078378898	-5.49106830386409	0.000225734927793625	0.00593940277120156
Merged-chr1-193889166-2	chr1	193889066	193889266	+	720.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13A2|LTR|ERVK	333593.0	NR_040477	74942.0	Mm.60689	NR_040477	ENSMUSG00000103692	4930503O07Rik	-	RIKEN cDNA 4930503O07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-4918385-2	chr2	4918285	4918485	+	827.416626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010726)	promoter-TSS (NM_010726)	-611.0	NM_010726	16922.0	Mm.391704	NM_010726	ENSMUSG00000026664	Phyh	AI256161|AI265699|Lnap1|PAHX	phytanoyl-CoA hydroxylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-154328255-5	chr3	154328053	154328253	+	744.373352	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010713, exon 3 of 9)	exon (NM_010713, exon 3 of 9)	2407.0	NM_010713	16875.0	Mm.15530	NM_010713	ENSMUSG00000096225	Lhx8	L3|Lhx7	LIM homeobox protein 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-116058290-2	chr9	116058190	116058390	+	628.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_028638, intron 14 of 14)	intron (NM_028638, intron 14 of 14)	117073.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-64232529-5	chr17	64232341	64232541	+	919.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	99442.0	NM_144859	224938.0	Mm.489681	NM_144859	ENSMUSG00000024083	Pja2	AI447901|AL022700|Neurodap1|mKIAA0438	praja ring finger ubiquitin ligase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-102810147-4	chr14	102810048	102810248	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	172484.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-22091945-4	chr3	22091851	22092051	+	964.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030732, intron 1 of 15)	RLTR23|LTR|ERV1	15299.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-106300934-1	chr4	106300834	106301034	+	563.0	f0_balb.idr	Intergenic	RLTR28|LTR|ERVL	-15279.0	NM_183225	329908.0	Mm.234544	NM_183225	ENSMUSG00000028514	Usp24	2700066K03Rik|2810030C21Rik|AI414051|B130021E18|C79851	ubiquitin specific peptidase 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-103913484-4	chr3	103913381	103913581	+	907.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356556)	promoter-TSS (NM_001356556)	-639.0	NM_001356557	229675.0	Mm.29366	NM_172684	ENSMUSG00000044098	Rsbn1	C230004D03Rik|E330004N01|KDM9|Rosbin|Rsbn|Rsbp|mKIAA3002	rosbin, round spermatid basic protein 1	protein-coding	-1.84446540621454	-1.66703209084435	-1.82297003008319	-1.83062437091832	-1.84230234211872	-1.6650127732569	-1.82086056797065	-1.82925424756847	0.037684011990387	0.991491645451152	1
Merged-chr14-61683069-2	chr14	61682969	61683169	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028264)	promoter-TSS (NR_028264)	-696.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-78995328-4	chr2	78995222	78995422	+	992.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	125644.0	NR_151457	22193.0	Mm.1485	NM_009454	ENSMUSG00000027011	Ube2e3	Ubce4|ubcM2	ubiquitin-conjugating enzyme E2E 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-38481963-4	chr2	38481860	38482060	+	851.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Arthur1C|DNA|hAT-Tip100	-29737.0	NM_021606	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101413739-2	chr7	101413639	101413839	+	674.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7952.0	NM_001008548	207728.0	Mm.247564	NM_001008548	ENSMUSG00000030653	Pde2a	CGS-PDE|cGSPDE	phosphodiesterase 2A, cGMP-stimulated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-78443237-4	chr9	78443141	78443341	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173386)	promoter-TSS (NM_173386)	-4.0	NM_173386	214763.0	Mm.101559	NM_173386	ENSMUSG00000032344	Mb21d1	E330016A19Rik|cGAS	Mab-21 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-5116455-4	chr2	5116365	5116565	+	991.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21311.0	NM_028804	74186.0	Mm.274715	NM_028804	ENSMUSG00000026676	Ccdc3	2310045O21Rik	coiled-coil domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-34035504-1	chr6	34035404	34035604	+	706.0	f0_balb.idr	intron (NM_028886, intron 1 of 19)	intron (NM_028886, intron 1 of 19)	6056.0	NM_028886	74354.0	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-13971875-3	chr14	13971819	13972019	+	845.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10067.0	NM_001359901	66231.0	Mm.295875	NM_025435	ENSMUSG00000053453	Thoc7	Nif3l1bp1	THO complex 7	protein-coding	1.54057310891216	1.07312550539284	1.29967212050858	2.37564232696528	1.55409177114409	1.91444897486056	1.30914988896093	2.71949225482716	0.809779089678092	0.472386710277995	0.926125823511231
Merged-chr12-119372560-4	chr12	119372454	119372654	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70856.0	NM_001163136	238455.0	Mm.31376	NM_001163136	ENSMUSG00000041886	Macc1	4732474O15Rik|Gm267	metastasis associated in colon cancer 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97693216-1	chr11	97693116	97693316	+	558.0	f1_balb.idr	intron (NM_001163308, intron 2 of 9)	intron (NM_001163308, intron 2 of 9)	6168.0	NM_001163307	22658.0	Mm.2418	NM_009545	ENSMUSG00000018537	Pcgf2	Mel18|Rnf110|Zfp144|mel-18	polycomb group ring finger 2	protein-coding	0.551145080872631	0.688614514513071	0.178421008108961	0.173344015151857	0.98141564714069	0.186459380438673	0.365603436149123	0.174231890301447	0.38973559434322	0.844257085969648	1
Merged-chr13-75794958-1	chr13	75794858	75795058	+	722.0	f1_balb.idr	Intergenic	B3A|SINE|B2	-44927.0	NM_001360151	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-158146400-4	chr2	158146293	158146493	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009373)	promoter-TSS (NM_009373)	-1.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27757242-2	chr2	27757142	27757342	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290481, intron 8 of 9)	intron (NM_001290481, intron 8 of 9)	46659.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-10953099-2	chr16	10952999	10953199	+	848.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38302.0	NR_131135	545180.0	Mm.373756	NR_131135	ENSMUSG00000095369	Gm21859	-	predicted gene, 21859	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-106690253-2	chr13	106690153	106690353	+	573.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	246705.0	NM_001360897	76582.0	Mm.132208	NM_029665	ENSMUSG00000042590	Ipo11	1700081H05Rik|2510001A17Rik|AI314624|AW555235|E330021B14Rik|Ranbp11	importin 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-30668868-2	chr5	30668768	30668968	+	759.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007681, intron 1 of 4)	B3|SINE|B2	1982.0	NR_126074	12615.0	Mm.290563	NM_007681	ENSMUSG00000029177	Cenpa	Cenp-A	centromere protein A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-155235455-4	chr4	155235369	155235569	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12934.0	NM_001357191	20481.0	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-16271280-2	chr19	16271180	16271380	+	549.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008139, intron 2 of 6)	intron (NM_008139, intron 2 of 6)	43724.0	NR_105832	102465218.0		NR_105832	ENSMUSG00000098718	Mir496b	Gm28028|mmu-mir-496b	microRNA 496b	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-66115682-1	chr5	66115582	66115782	+	618.0	f1_c57bl6.idr	intron (NM_001127382, intron 2 of 7)	intron (NM_001127382, intron 2 of 7)	-17503.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	0.538070554899645	1.30328082140138	0.565117086273556	1.66237539572188	0.540632891325695	1.31632592627703	0.567954897379757	1.07876986900125	-0.791685005922863	0.634312172041253	0.982417279970648
Merged-chr12-8516015-1	chr12	8515915	8516115	+	548.0	f1_balb.idr	Intergenic	Intergenic	-16006.0	NM_007483	11852.0	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	1.27297419146698	1.56498348760266	1.91345800569411	1.62515321239224	1.78116424010641	1.87323842702058	1.92847384076434	1.63278101014479	0.62938536996074	0.545862603772716	0.956736445492953
Merged-chr10-93366274-3	chr10	93366110	93366310	+	886.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29999.0	NR_038014	432488.0	Mm.32833	NR_038014		Gm17745	Gm3546	predicted gene, 17745	ncRNA	1.93382732198819	1.5774519600707	1.23369067585155	1.69941782103217	2.88703626309443	2.37303834073497	3.6221849396325	2.33595457439163	2.88159689860664	0.00190127359218648	0.0321426452324972
Merged-chr15-38259446-4	chr15	38259347	38259547	+	989.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	40244.0	NM_008757	18285.0	Mm.252830	NM_008757	ENSMUSG00000061923	Odf1	-	outer dense fiber of sperm tails 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-156559357-4	chr1	156559273	156559473	+	985.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001136104, intron 1 of 12)	CpG	586.0	NM_001136104	11352.0	Mm.329515	NM_009595	ENSMUSG00000026596	Abl2	AA536808|Abll|Arg	v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)	protein-coding	-0.324979764102765	0.421819110237839	-0.315588428115483	-0.319116879175142	-0.174315826742678	-0.309988826178571	-0.314580170221106	0.120526894076658	-0.631154599689856	0.796894300002767	1
Merged-chr9-3002555-7	chr9	3002472	3002672	+	820.761902	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GSAT_MM|Satellite|Satellite	36171.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-18600434-3	chr19	18600333	18600533	+	782.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017375, intron 2 of 9)	intron (NM_017375, intron 2 of 9)	31380.0	NM_017375	20409.0	Mm.172222	NM_017375	ENSMUSG00000024725	Ostf1	C78236|SH3P2|Sh3d3	osteoclast stimulating factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36557311-2	chr18	36557136	36557336	+	842.333374	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001271547)	TTS (NM_001271547)	-3367.0	NM_175375	108857.0	Mm.482287	NM_175375	ENSMUSG00000024483	Ankhd1	1110004O12Rik|4933432B13Rik|9130019P20Rik|A530027J04Rik|A630021B20Rik|AA571404|Mask|mFLJ00246|mKIAA1085	ankyrin repeat and KH domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72152822-4	chr6	72152684	72152884	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001035228, intron 6 of 6)	intron (NM_001035228, intron 6 of 6)	-29587.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-61110216-2	chr18	61110116	61110316	+	693.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037859, intron 3 of 21)	intron (NM_001037859, intron 3 of 21)	4644.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-44562810-4	chr19	44562748	44562948	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_176958)	promoter-TSS (NM_176958)	-6.0	NM_176958	319594.0	Mm.145278	NM_176958	ENSMUSG00000036450	Hif1an	2310046M24Rik|A830014H24Rik|FIH|FIH1	hypoxia-inducible factor 1, alpha subunit inhibitor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-120613004-4	chr5	120612903	120613103	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028041)	promoter-TSS (NM_028041)	-127.0	NM_028041	71990.0	Mm.24495	NM_028041	ENSMUSG00000029599	Ddx54	2410015A15Rik|AI414901|DP97	DEAD (Asp-Glu-Ala-Asp) box polypeptide 54	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-48913803-4	chr11	48913707	48913907	+	860.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045540, intron 2 of 2)	intron (NM_001045540, intron 2 of 2)	-11655.0	NM_001024230	432555.0	Mm.338931	NM_001024230	ENSMUSG00000058163	Gm5431	EG432555|Irgb9b8	predicted gene 5431	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-43911988-4	chr1	43911870	43912070	+	845.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22024.0	NM_001310540	22019.0	Mm.401675	NM_009418	ENSMUSG00000041763	Tpp2	TPP-2|TppII	tripeptidyl peptidase II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141538003-4	chr4	141537808	141538008	+	882.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347235, intron 1 of 14)	CpG	689.0	NM_001347235	56381.0	Mm.299906	NM_019763	ENSMUSG00000040761	Spen	Mint|mKIAA0929	spen family transcription repressor	protein-coding	0.515110861161791	0.544177695377422	0.534742965353265	1.10006075105696	0.676965562505822	1.20914102011221	1.15498192087556	1.1076169593432	1.84352344037473	0.260902005891797	1
Merged-chr7-90476857-1	chr7	90476757	90476957	+	812.5	f0_balb.idr	promoter-TSS (NM_026734)	promoter-TSS (NM_026734)	-862.0	NM_026734	68472.0	Mm.289791	NM_026734	ENSMUSG00000030614	Tmem126b	1110001A23Rik	transmembrane protein 126B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-84579445-2	chr17	84579345	84579545	+	650.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357987, intron 14 of 28)	intron (NM_001357987, intron 14 of 28)	-47054.0	NM_172256	213575.0	Mm.246119	NM_172256	ENSMUSG00000024253	Dync2li1	4933404O11Rik|CGI-60|D2lic|LIC3|mD2LIC	dynein cytoplasmic 2 light intermediate chain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-99266142-5	chr10	99266119	99266319	+	972.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026268, exon 3 of 3)	exon (NM_026268, exon 3 of 3)	2988.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118231149-2	chr11	118231049	118231249	+	743.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	B4A|SINE|B4	17443.0	NM_001112699	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171659811-1	chr1	171659711	171659911	+	675.0	f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	-6774.0	NM_144539	75345.0	Mm.164642	NM_144539	ENSMUSG00000038179	Slamf7	19A|19A24|4930560D03Rik|CRACC|CS1	SLAM family member 7	protein-coding	1.3369181277573	1.69253282630461	0.828203641594251	0.809607762104658	1.19260956051501	2.4425472733496	2.18817842695157	0.812901368360591	1.80832688225965	0.172423148220744	0.640342426440101
Merged-chr11-102246450-4	chr11	102246345	102246545	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2437.0	NM_153544	217216.0	Mm.247335	NM_153544	ENSMUSG00000034773	BC030867	-	cDNA sequence BC030867	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-63436493-4	chr14	63436383	63436583	+	996.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177628)	promoter-TSS (NM_177628)	89.0	NM_177628	219148.0	Mm.37882	NM_177628	ENSMUSG00000035095	Fam167a	A030013D21	family with sequence similarity 167, member A	protein-coding	3.27950159055253	3.9066978530512	2.47921326182285	3.45908621552437	4.20189835416961	3.86344729846699	2.67758491591522	4.04207015174917	0.660759434280838	0.267653596845223	0.770344120010151
Merged-chr17-35232241-4	chr17	35232127	35232327	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010909, intron 2 of 3)	intron (NM_010909, intron 2 of 3)	-2783.0	NM_001347351	66237.0	Mm.396107	NM_023179	ENSMUSG00000024403	Atp6v1g2	1500002D01Rik|Atp6g2|NG38|VAG2	ATPase, H+ transporting, lysosomal V1 subunit G2	protein-coding	4.76123237745196	4.08368380521498	4.53591774727657	4.37080502458463	4.82492580846611	3.4390323602697	4.18478643270688	4.4395866123552	-0.179812600420823	0.676750065939786	0.99440487726309
Merged-chr18-66461175-4	chr18	66461049	66461249	+	801.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021451, intron 2 of 2)	intron (NM_021451, intron 2 of 2)	2545.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-142386835-4	chr7	142386737	142386937	+	915.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009983, intron 1 of 8)	intron (NM_009983, intron 1 of 8)	1033.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65593702-2	chr9	65593602	65593802	+	615.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_151702, intron 10 of 11)	ID_B1|SINE|B4	6542.0	NM_001357527	208084.0	Mm.211032	NM_172453	ENSMUSG00000041064	Pif1	4631410M14|AI449441	PIF1 5'-to-3' DNA helicase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-96722462-4	chr15	96722365	96722565	+	839.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	BGLII_Mus|LTR|ERVK	-22737.0	NM_175121	67760.0	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-74308820-4	chr1	74308735	74308935	+	990.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039509, intron 2 of 9)	RMER2|LTR|ERV1	-4499.0	NM_027154	69660.0	Mm.261182	NM_027154	ENSMUSG00000006301	Tmbim1	2310061B02Rik|AA960455|AU024746|C78899|RECS1|Tmbib1|mKIAA4161	transmembrane BAX inhibitor motif containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-173812092-3	chr2	173811986	173812186	+	728.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	74515.0	NM_019806	56491.0	Mm.260456	NM_019806	ENSMUSG00000054455	Vapb	AI225786|AI840687|AI848259|D2Abb2e|R75548|VAP33b|Vamp33b	vesicle-associated membrane protein, associated protein B and C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-38095658-4	chr16	38095473	38095673	+	902.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347232, intron 1 of 11)	B2_Mm2|SINE|B2	-6313.0	NR_033221	414072.0	Mm.483602	NR_033221		BC031361	-	cDNA sequence BC031361	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122884276-2	chr8	122884176	122884376	+	821.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_037865, exon 14 of 14)	non-coding (NR_037865, exon 14 of 14)	35902.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-45126905-2	chr2	45126805	45127005	+	650.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9463.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-38795416-2	chr6	38795316	38795516	+	914.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010433, intron 2 of 14)	intron (NM_010433, intron 2 of 14)	41895.0	NM_001136065	15258.0	Mm.23790	NM_010433	ENSMUSG00000061436	Hipk2	1110014O20Rik|B230339E18Rik|Stank	homeodomain interacting protein kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16282570-2	chr7	16282470	16282670	+	773.333313	f1_balb.idr|f1_c57bl6.idr	exon (NM_001136471, exon 5 of 14)	exon (NM_001136471, exon 5 of 14)	2089.0	NM_172297	243846.0	Mm.482401	NM_172297	ENSMUSG00000041375	Ccdc9	2600011L02Rik	coiled-coil domain containing 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34862676-4	chr17	34862573	34862773	+	948.474976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001142706)	promoter-TSS (NM_001142706)	-159.0	NM_008198	14962.0	Mm.653	NM_008198	ENSMUSG00000090231	Cfb	AI195813|AI255840|B|Bf|C2|Fb|H2-Bf	complement factor B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100343831-4	chr11	100343752	100343952	+	989.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR49|LTR|ERVK	9445.0	NM_010257	14459.0	Mm.4767	NM_010257	ENSMUSG00000017165	Gast	GAS	gastrin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-5716479-2	chr13	5716379	5716579	+	601.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	141613.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-83295096-4	chr15	83295009	83295209	+	936.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43335.0	NM_001004150	239559.0	Mm.323805	NM_001004150	ENSMUSG00000047878	A4galt	-	alpha 1,4-galactosyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123999274-2	chr5	123999174	123999374	+	764.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_145070, intron 20 of 31)	intron (NM_145070, intron 20 of 31)	2422.0	NR_105999	102465625.0		NR_105999	ENSMUSG00000098454	Mir7032	Gm27309|mmu-mir-7032	microRNA 7032	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-40345321-3	chr9	40345215	40345415	+	710.733337	f0_balb.idr|f0_c57.idr|f1_balb.idr	intron (NM_001357617, intron 2 of 20)	intron (NM_001357617, intron 2 of 20)	930.0	NM_001357623	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	-0.0444133115123166	-0.16157959219012	-0.165512773590562	-0.019487214388702	0.175761894079935	-0.160689459449784	-0.00025577102670821	0.327015577236408	1.9664662775021	0.363044396857913	1
Merged-chr16-50843507-2	chr16	50843407	50843607	+	712.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	60098.0	NR_131005	78639.0	Mm.160109	NR_131005	ENSMUSG00000092276	1700116B05Rik	-	RIKEN cDNA 1700116B05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-132021172-2	chr2	132021072	132021272	+	705.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_175445, intron 1 of 10)	intron (NM_175445, intron 1 of 10)	8816.0	NM_175445	215653.0	Mm.204737	NM_175445	ENSMUSG00000027339	Rassf2	3830431H01Rik|9030412M04Rik|AI852669|AW495050	Ras association (RalGDS/AF-6) domain family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-109987029-3	chr7	109986959	109987159	+	956.25	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153525)	promoter-TSS (NM_153525)	-829.0	NM_153525	233724.0	Mm.43212	NM_153525	ENSMUSG00000047554	Tmem41b	1500015G02Rik|1500031M19Rik|AU018901|D7Ertd70e|D7Ertd743e	transmembrane protein 41B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45722818-2	chr7	45722749	45722949	+	939.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033170, intron 1 of 4)	intron (NM_001033170, intron 1 of 4)	1629.0	NM_001033170	73813.0	Mm.322591	NM_001033170	ENSMUSG00000054161	Fam83e	4930403C10Rik	family with sequence similarity 83, member E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-67699234-2	chr18	67699134	67699334	+	888.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008977, intron 2 of 9)	intron (NM_008977, intron 2 of 9)	25387.0	NM_001127177	19255.0	Mm.260433	NM_008977	ENSMUSG00000024539	Ptpn2	AI325124|Ptpt|TC-PTP	protein tyrosine phosphatase, non-receptor type 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46959807-2	chr19	46959707	46959907	+	551.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164363, intron 1 of 17)	intron (NM_001164363, intron 1 of 17)	2544.0	NM_029810	76952.0	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111164650-4	chr12	111164541	111164741	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_130987, intron 2 of 3)	intron (NR_130987, intron 2 of 3)	-1729.0	NM_001286122	22031.0	Mm.27431	NM_011632	ENSMUSG00000021277	Traf3	AI528849|CAP-1|CD40bp|CRAF1|LAP1|T-BAM|amn	TNF receptor-associated factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-81200654-6	chr16	81200484	81200684	+	941.2666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010954)	promoter-TSS (NM_010954)	-113.0	NM_001113208	17968.0	Mm.433941	NM_010954	ENSMUSG00000022762	Ncam2	Ncam-2|Ocam|RNCAM	neural cell adhesion molecule 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-94310795-2	chr16	94310695	94310895	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_139145, intron 1 of 10)	MTD|LTR|ERVL-MaLR	2768.0	NM_139145	110948.0	Mm.30921	NM_139145	ENSMUSG00000040820	Hlcs	410I21.SP6|D16Jhu34	holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-63217601-1	chr4	63217501	63217701	+	566.0	f1_c57bl6.idr	intron (NM_025685, intron 1 of 60)	intron (NM_025685, intron 1 of 60)	2189.0	NM_025685	373864.0	Mm.194116	NM_025685	ENSMUSG00000045672	Col27a1	5730512J02Rik|AI449266	collagen, type XXVII, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-47472546-4	chr14	47472435	47472635	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030236)	promoter-TSS (NM_030236)	-26.0	NR_027414	78938.0	Mm.11935	NM_030236	ENSMUSG00000037536	Fbxo34	2900057B08Rik|5830426G16Rik	F-box protein 34	protein-coding	5.642444699301	6.15094543504935	6.19594295706645	6.30223316264936	5.66082928539066	5.98535490083139	5.98021072065437	5.78735788534917	-0.258940702946803	0.285816964254005	0.79047889608285
Merged-chr9-94688684-2	chr9	94688584	94688784	+	582.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177909, intron 2 of 15)	intron (NM_177909, intron 2 of 15)	18792.0	NM_177909	331004.0	Mm.326125	NM_177909	ENSMUSG00000031129	Slc9a9	5730527A11Rik|9930105B05|AI854429|Nhe9	solute carrier family 9 (sodium/hydrogen exchanger), member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-83729540-4	chr2	83729444	83729644	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008402, intron 1 of 29)	intron (NM_008402, intron 1 of 29)	5147.0	NM_008402	16410.0	Mm.227	NM_008402	ENSMUSG00000027087	Itgav	1110004F14Rik|2610028E01Rik|CD51|D430040G12Rik	integrin alpha V	protein-coding	3.31776937790836	2.71438346084743	3.80795631223516	4.60177047762934	3.27045696904823	2.34260918088916	3.37465616468102	3.58916298412776	-0.863530725979294	0.172758002273416	0.640855159947368
Merged-chr17-87985040-4	chr17	87984940	87985140	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010830, exon 4 of 10)	exon (NM_010830, exon 4 of 10)	9990.0	NM_010830	17688.0	Mm.18210	NM_010830	ENSMUSG00000005370	Msh6	AU044881|AW550279|GTBP|Gtmbp	mutS homolog 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-125560992-4	chr8	125560894	125561094	+	995.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357372, intron 1 of 21)	intron (NM_001357372, intron 1 of 21)	8869.0	NM_001357372	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	3.15795169787955	2.31319271864734	2.05406370405424	3.19212515861656	2.92106317520285	2.77051118671761	2.89536748968957	2.47626633374505	-0.0271535598418798	0.970573978932357	0.998431161219273
Merged-chr2-155098885-2	chr2	155098767	155098967	+	634.0	f0_balb.idr|f1_balb.idr	non-coding (NR_040634, exon 3 of 3)	non-coding (NR_040634, exon 3 of 3)	1212.0	NR_040634	100504268.0	Mm.410858	NR_040634	ENSMUSG00000087254	2310005A03Rik	-	RIKEN cDNA 2310005A03 gene	ncRNA	1.6449638577546	1.1771841600807	2.19423248953035	1.12430087045607	1.79717802143447	2.5088232816559	1.95769726276448	2.78343697880375	1.82192706662729	0.0858338123525033	0.450233494872632
Merged-chr10-62261312-4	chr10	62261211	62261411	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009314, exon 3 of 5)	exon (NM_009314, exon 3 of 5)	8873.0	NM_009314	21337.0	Mm.8054	NM_009314	ENSMUSG00000020081	Tacr2	Nk2r|Skr|Tac2r	tachykinin receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165285340-2	chr2	165285240	165285440	+	907.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252575, intron 1 of 9)	intron (NM_001252575, intron 1 of 9)	2447.0	NM_001252574	228875.0	Mm.21184	NM_144893	ENSMUSG00000017664	Slc35c2	C85957|CGI-15|D2Wsu58e|Ovcov1	solute carrier family 35, member C2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-112265623-4	chr2	112265526	112265726	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133649)	promoter-TSS (NM_133649)	-688.0	NM_133649	107723.0	Mm.491155	NM_133648	ENSMUSG00000027130	Slc12a6	9530023I19Rik|KCC3|gaxp	solute carrier family 12, member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-40932440-3	chr14	40932329	40932529	+	904.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145928, intron 2 of 8)	intron (NM_145928, intron 2 of 8)	15780.0	NM_001316748	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97555468-4	chr11	97555361	97555561	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018873, intron 1 of 19)	intron (NM_018873, intron 1 of 19)	19665.0	NM_018873	56013.0	Mm.342665	NM_018873	ENSMUSG00000038453	Srcin1	P140|SNIP|mKIAA1684|p140Cap	SRC kinase signaling inhibitor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-23755927-2	chr17	23755756	23755956	+	655.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_153791, exon 7 of 7)	exon (NM_153791, exon 7 of 7)	6620.0	NR_015472	638247.0	Mm.382600	NR_015472	ENSMUSG00000097006	9530082P21Rik	E030034P13Rik	RIKEN cDNA 9530082P21 gene	ncRNA	-0.486156301352244	-0.617110383626811	-0.620558141590047	-0.623213174005408	-0.357979755419783	0.00173671394621283	-0.619798338885589	-0.622749664656559	2.43752952363283	0.358376619174716	1
Merged-chr5-118615645-3	chr5	118615560	118615760	+	666.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347445, intron 2 of 30)	intron (NM_001347445, intron 2 of 30)	54941.0	NM_172424	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-75873824-4	chr15	75873727	75873927	+	918.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	11488.0	NM_026960	69146.0	Mm.27385	NM_026960	ENSMUSG00000022575	Gsdmd	1810036L03Rik|AW558049|DF5L|Dfna5l|Gsdmdc1|M2-4	gasdermin D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-68952054-1	chr18	68951954	68952154	+	572.0	f0_balb.idr	promoter-TSS (NR_038051)	promoter-TSS (NR_038051)	-526.0	NR_038051	78931.0	Mm.160155	NR_038051		4930546C10Rik	-	RIKEN cDNA 4930546C10 gene	ncRNA	1.10341138725579	0.628254460778132	1.05941799874371	0.596265277895869	2.16197764634139	0.632191621821837	1.83339770993123	0.598768548031199	2.24995725121824	0.145649765806287	0.596091332081597
Merged-chr11-9328612-2	chr11	9328517	9328717	+	928.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178259, intron 24 of 61)	MTD|LTR|ERVL-MaLR	136675.0	NM_178259	268379.0	Mm.39270	NM_178259	ENSMUSG00000004668	Abca13	9830132L24|A930002G16Rik|AI956815	ATP-binding cassette, sub-family A (ABC1), member 13	protein-coding	-0.913700947050176	-0.400958389194046	-0.907481563533457	-0.909820603891973	-0.913123946877299	-0.534089650650601	-0.906812700219259	-0.909412060853313	-0.644978029181113	0.834898325248146	1
Merged-chr8-39638046-4	chr8	39637906	39638106	+	767.224976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113326, intron 1 of 9)	intron (NM_001113326, intron 1 of 9)	4672.0	NM_031195	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	1.03077469590511	1.61714758217611	1.95547926039305	0.874778040253174	1.54274295096359	0.905539261256767	1.57034080050364	1.39110409232117	-0.26739601368628	0.838404246510503	0.998431161219273
Merged-chr11-118479168-2	chr11	118479068	118479268	+	592.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_172573, exon 3 of 14)	exon (NM_172573, exon 3 of 14)	2336.0	NM_001359368	217364.0	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-118564681-4	chr14	118564572	118564772	+	912.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163676, intron 18 of 29)	intron (NM_001163676, intron 18 of 29)	27800.0	NR_105815	102465208.0		NR_105815	ENSMUSG00000098433	Mir6391	Gm27914|mmu-mir-6391	microRNA 6391	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116495472-1	chr11	116495372	116495572	+	639.0	f1_balb.idr	Intergenic	Intergenic	-5126.0	NM_026364	67763.0	Mm.25125	NM_026364	ENSMUSG00000015869	Prpsap1	5730409F23Rik|PAP39	phosphoribosyl pyrophosphate synthetase-associated protein 1	protein-coding	-1.1000153649687	-1.07922802209952	-1.09015834808889	-1.09695034511635	-0.83418652570522	-1.07685937486068	-1.08768396187082	-0.67530516418638	2.65610859557207	0.40904259789681	1
Merged-chr1-171378116-1	chr1	171378016	171378216	+	626.0	f0_balb.idr	intron (NM_001122680, intron 1 of 7)	L2c|LINE|L2	7943.0	NM_001122680	71740.0	Mm.263414	NM_027893	ENSMUSG00000006411	Nectin4	1200017F15Rik|Prr4|Pvrl4	nectin cell adhesion molecule 4	protein-coding	0.754845404729722	0.700793297493778	0.486981453997504	0.480114146403168	1.24123558985356	1.02529301981998	0.488937290941514	1.15470538071398	2.34181366682506	0.16588697109257	1
Merged-chr12-34751714-1	chr12	34751614	34751814	+	584.333313	f0_balb.idr	intron (NM_001271386, intron 3 of 27)	intron (NM_001271386, intron 3 of 27)	165381.0	NM_001271386	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	2.76383444087626	1.41085907604706	1.85201653606701	2.58847213165167	2.1617413713491	3.19564301294422	2.05033437737836	2.60209566470588	0.63829371686632	0.478523851695513	0.928092227925527
Merged-chr11-3180811-2	chr11	3180712	3180912	+	954.25	f0_balb.idr|f1_balb.idr	intron (NM_030207, intron 4 of 32)	PB1D10|SINE|Alu	12651.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-125382752-2	chr10	125382652	125382852	+	570.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53789.0	NM_001358496	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-110772724-4	chr7	110772634	110772834	+	982.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_009667, exon 1 of 15)	5' UTR (NM_009667, exon 1 of 15)	130.0	NM_009667	11717.0	Mm.3238	NM_009667	ENSMUSG00000005686	Ampd3	-	adenosine monophosphate deaminase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117835713-2	chr11	117835613	117835813	+	707.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_027827, exon 9 of 11)	exon (NM_027827, exon 9 of 11)	-9699.0	NM_009387	21877.0	Mm.2661	NM_009387	ENSMUSG00000025574	Tk1	D530002A18Rik|Tk-1|Tk1a|Tk1b	thymidine kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-124772348-3	chr4	124772247	124772447	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008385, intron 7 of 23)	L2a|LINE|L2	-20993.0	NR_151694	102634646.0	Mm.348378	NR_151694		Gm12915	-	predicted gene 12915	ncRNA	2.56099628334223	2.22321162311241	2.65488133076229	3.27633850630721	2.89230773430162	3.14284616094468	3.72860815839758	3.6767901264656	1.13712967449673	0.0829964071613849	0.440875542999836
Merged-chr7-15987487-2	chr7	15987387	15987587	+	658.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081418, exon 5 of 14)	exon (NM_001081418, exon 5 of 14)	12008.0	NM_001081418	243842.0	Mm.440249	NM_001081418	ENSMUSG00000070808	Bicra	Gltscr1	BRD4 interacting chromatin remodeling complex associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-137076297-4	chr5	137076207	137076407	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4035.0	NM_008871	18787.0	Mm.250422	NM_008871	ENSMUSG00000037411	Serpine1	PAI-1|PAI1|Planh1	serine (or cysteine) peptidase inhibitor, clade E, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-24884051-4	chr7	24884015	24884215	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360119)	promoter-TSS (NM_001360119)	-477.0	NM_001360128	20085.0	Mm.300281	NM_023133	ENSMUSG00000040952	Rps19	Dsk3	ribosomal protein S19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166078247-2	chr2	166078147	166078347	+	803.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252579, intron 17 of 20)	intron (NM_001252579, intron 17 of 20)	77038.0	NM_001355619	72043.0	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-100747162-3	chr15	100747060	100747260	+	952.666626	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-14423.0	NR_045782	619313.0	Mm.123436	NR_045781	ENSMUSG00000116504	I730030J21Rik	-	RIKEN cDNA I730030J21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-61553480-2	chr3	61553380	61553580	+	754.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	188973.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-54888696-4	chr1	54888558	54888758	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081433, intron 1 of 27)	MLT1J|LTR|ERVL-MaLR	37729.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-76813719-3	chr12	76813616	76813816	+	753.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134050, intron 1 of 6)	intron (NM_134050, intron 1 of 6)	140.0	NM_001347405	104886.0	Mm.172847	NM_134050	ENSMUSG00000021062	Rab15	2310012G06Rik|AI840042	RAB15, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-159841732-2	chr3	159841632	159841832	+	677.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356350, intron 1 of 12)	intron (NM_001356350, intron 1 of 12)	2082.0	NM_001356350	68151.0	Mm.6766	NM_026582	ENSMUSG00000028173	Wls	5031439A09Rik|AI173978|AI987742|EVI|Gpr177	wntless WNT ligand secretion mediator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44460788-4	chr9	44460703	44460903	+	939.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6036.0	NM_009476	22269.0	Mm.4453	NM_009476	ENSMUSG00000041523	Upk2	AW491716|UPII	uroplakin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-73303347-2	chr14	73303247	73303447	+	885.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009029, intron 2 of 26)	intron (NM_009029, intron 2 of 26)	22475.0	NM_009029	19645.0	Mm.273862	NM_009029	ENSMUSG00000022105	Rb1	Rb|Rb-1|pRb|pp105	RB transcriptional corepressor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-108163002-5	chr10	108162847	108163047	+	970.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027892, intron 1 of 25)	intron (NM_027892, intron 1 of 25)	547.0	NM_027892	17931.0	Mm.422959	NM_027892	ENSMUSG00000019907	Ppp1r12a	1200015F06Rik|5730577I22Rik|AA792106|AV099298|D10Ertd625e|Mypt1	protein phosphatase 1, regulatory (inhibitor) subunit 12A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-24462996-4	chr7	24462894	24463094	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011113, intron 1 of 6)	intron (NM_011113, intron 1 of 6)	511.0	NM_011113	18793.0	Mm.1359	NM_011113	ENSMUSG00000046223	Plaur	Cd87|u-PAR|uPAR	plasminogen activator, urokinase receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-122812322-2	chr6	122812222	122812422	+	875.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2B2|LINE|L1	-7862.0	NM_021899	60611.0	Mm.87142	NM_021899	ENSMUSG00000003154	Foxj2	Fhx	forkhead box J2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-150749575-1	chr2	150749475	150749675	+	1000.0	f0_balb.idr	intron (NM_001355068, intron 1 of 13)	intron (NM_001355068, intron 1 of 13)	494.0	NM_172117	12497.0	Mm.275524	NM_172117	ENSMUSG00000033068	Entpd6	2700026H11Rik|Cd39l2|NTPDase-6	ectonucleoside triphosphate diphosphohydrolase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-9598211-4	chr3	9598108	9598308	+	893.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133218, intron 1 of 8)	intron (NM_133218, intron 1 of 8)	11877.0	NM_133218	170753.0	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-10302550-2	chr3	10302450	10302650	+	570.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1367.0	NM_029310	75497.0	Mm.47052	NM_029310	ENSMUSG00000027530	Fabp12	1700008G05Rik	fatty acid binding protein 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-28236874-4	chr3	28236793	28236993	+	718.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26321.0	NM_001163007	665113.0	Mm.126193	NM_026910	ENSMUSG00000027692	Tnik	1500031A17Rik|4831440I19Rik|AI451411|C530008O15Rik|C630040K21Rik	TRAF2 and NCK interacting kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97312088-2	chr6	97311988	97312188	+	630.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 12 of 23)	intron (NM_145148, intron 12 of 23)	-59308.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-17721172-4	chr10	17721122	17721322	+	998.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2006.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-99226082-2	chr5	99225982	99226182	+	990.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_181318, intron 10 of 13)	L3|LINE|CR1	26845.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-86483254-2	chr11	86483154	86483354	+	709.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	-1403.0	NM_029788	76892.0	Mm.262707	NM_029788	ENSMUSG00000020521	Rnft1	0610013E23Rik|AV007605	ring finger protein, transmembrane 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-5793985-4	chr2	5793876	5794076	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001356501)	TTS (NM_001356501)	-51058.0	NM_016918	53893.0	Mm.251904	NM_016918	ENSMUSG00000025817	Nudt5	-	nudix (nucleoside diphosphate linked moiety X)-type motif 5	protein-coding	5.34213658322694	4.61012921144842	4.9153065300968	5.25740109591244	6.21621444817688	6.03380899809491	6.20641125583002	5.91107992166576	1.15523517386398	1.75918302927351e-05	0.000736279464600824
Merged-chr7-38030852-1	chr7	38030752	38030952	+	676.0	f1_balb.idr	Intergenic	RMER20A|LTR|ERVK	-11300.0	NM_011274	19777.0	Mm.387220	NM_011274	ENSMUSG00000030421	Uri1	C80913|NNX3|Rmp	URI1, prefoldin-like chaperone	protein-coding	0.56555755628011	0.643527404040171	2.05297081947727	0.599784586049316	0.570805486709737	2.06893865236123	2.315992972631	0.603250493590202	1.26922781077244	0.698258192415184	0.998284579433352
Merged-chr15-78369118-4	chr15	78369030	78369230	+	868.93335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19639.0	NM_001163613	73376.0	Mm.73222	NM_028522	ENSMUSG00000062154	Tex33	1700061J05Rik|Ean57	testis expressed 33	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-89580042-3	chr6	89579939	89580139	+	885.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167736, intron 1 of 6)	intron (NM_001167736, intron 1 of 6)	15613.0	NM_025351	66098.0	Mm.20313	NM_025351	ENSMUSG00000030086	Chchd6	0710001P09Rik|1700021B03Rik	coiled-coil-helix-coiled-coil-helix domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-57548828-3	chr14	57548683	57548883	+	850.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_026526)	TTS (NM_026526)	22786.0	NM_026526	68043.0	Mm.45225	NM_026526	ENSMUSG00000021951	Eef1akmt1	2510005D08Rik|AW045965|Ayu21-96|Gt(pU21)96Imeg|GtAyu21-96|N6amt2	EEF1A alpha lysine methyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-4483322-2	chr11	4483222	4483422	+	598.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028860, intron 17 of 17)	intron (NM_028860, intron 17 of 17)	-42240.0	NM_029458	75828.0	Mm.159592	NM_029458	ENSMUSG00000020419	Hormad2	4930529M09Rik	HORMA domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-136099792-2	chr1	136099692	136099892	+	594.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081023, intron 26 of 43)	intron (NM_001081023, intron 26 of 43)	31391.0	NR_046170	329253.0	Mm.487858	NR_046167	ENSMUSG00000086264	Gm15850	6530439I21	predicted gene 15850	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-99390675-3	chr9	99390512	99390712	+	653.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008624, intron 4 of 5)	intron (NM_008624, intron 4 of 5)	-32082.0	NM_177775	272636.0	Mm.490440	NM_177775	ENSMUSG00000037681	Esyt3	D930024E11|D9Ertd280e|Fam62c|mKIAA4186	extended synaptotagmin-like protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-142394439-4	chr7	142394312	142394512	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6542.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-11167093-2	chr4	11166993	11167193	+	573.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021897, intron 3 of 3)	intron (NM_021897, intron 3 of 3)	10652.0	NM_021897	60599.0	Mm.393018	NM_021897	ENSMUSG00000028211	Trp53inp1	2700057G22Rik|SIP|SIP18|SIP27|Stinp|Teap|p53DINP1	transformation related protein 53 inducible nuclear protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-41811199-2	chr10	41811099	41811299	+	919.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_001162908, exon 1 of 10)	exon (NM_001162908, exon 1 of 10)	625.0	NM_001162908	140742.0	Mm.139418	NM_001013370	ENSMUSG00000038332	Sesn1	1110002G11Rik|AU044290|Pa26|Sest1	sestrin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-108319321-2	chr13	108319221	108319421	+	584.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178683, intron 1 of 10)	RMER17B|LTR|ERVK	2984.0	NM_178683	218581.0	Mm.32318	NM_178683	ENSMUSG00000021697	Depdc1b	9830132O03|AW260467|XTP1	DEP domain containing 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-58513990-2	chr16	58513890	58514090	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357433, intron 1 of 10)	intron (NM_001357433, intron 1 of 10)	9436.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119711003-4	chr11	119710910	119711110	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028898, intron 3 of 33)	intron (NM_028898, intron 3 of 33)	108105.0	NM_028898	74370.0	Mm.209933	NM_028898	ENSMUSG00000025583	Rptor	4932417H02Rik|Rap|Raptor|mKIAA1303	regulatory associated protein of MTOR, complex 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-160210725-4	chr2	160210636	160210836	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	116758.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-109694079-4	chr8	109693993	109694193	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028018)	promoter-TSS (NM_028018)	-799.0	NM_001361562	71955.0	Mm.290036	NM_028018	ENSMUSG00000031729	Ist1	2400003C14Rik|AW536298|mKIAA0174	increased sodium tolerance 1 homolog (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-35735455-3	chr7	35735352	35735552	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178704, intron 3 of 18)	intron (NM_178704, intron 3 of 18)	19002.0	NM_178704	233115.0	Mm.257808	NM_178704	ENSMUSG00000043671	Dpy19l3	6030410G08|9330164H19Rik	dpy-19-like 3 (C. elegans)	protein-coding	1.37058780654428	1.99469169516837	1.58492269983403	3.38892979301199	5.11364167451066	4.71120137968707	5.27406634866946	5.30616053838595	3.97548962332316	0.000653842679540111	0.0138613132997417
Merged-chr1-162388727-4	chr1	162388628	162388828	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038619, intron 2 of 20)	intron (NM_001038619, intron 2 of 20)	89306.0	NM_172646	103967.0	Mm.441620	NM_172646	ENSMUSG00000040265	Dnm3	9630020E24Rik|AW061159|B230343F03Rik|C530045C17|Dyna III|mKIAA0820	dynamin 3	protein-coding	5.07632558714609	5.83235423624303	4.95703659710643	5.16108824944023	6.10916084630338	6.536281867605	6.15421103412008	4.66956956185851	0.808467838863561	0.0223358575113684	0.193401600338936
Merged-chr11-106662082-2	chr11	106661982	106662182	+	741.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001305158, intron 13 of 14)	intron (NM_001305158, intron 13 of 14)	-49152.0	NM_198292	21763.0	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-65960168-2	chr3	65960068	65960268	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1919.0	NM_001355432	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-44297638-2	chr19	44297538	44297738	+	564.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_009128, intron 2 of 5)	intron (NM_009128, intron 2 of 5)	3962.0	NM_009128	20250.0	Mm.487021	NM_009128	ENSMUSG00000025203	Scd2	Mir5114|Scd-2|mir-5114|swty	stearoyl-Coenzyme A desaturase 2	protein-coding	0.995209541443151	1.77007314308191	1.05731234287099	1.80077214893291	1.83802249372965	2.08701192044348	2.91398625922191	1.66265658763434	2.07805449748091	0.0618954750019069	0.36958621884848
Merged-chr11-114866370-2	chr11	114866270	114866470	+	913.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110338, intron 2 of 3)	(TG)n|Simple_repeat|Simple_repeat	14340.0	NM_147217	70355.0	Mm.242413	NM_147217	ENSMUSG00000051043	Gprc5c	1110028I06Rik|3200002M13Rik|Raig3	G protein-coupled receptor, family C, group 5, member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-72291681-3	chr5	72291588	72291788	+	899.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_003966, intron 21 of 22)	intron (NR_003966, intron 21 of 22)	88345.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-50678101-2	chr17	50678001	50678201	+	636.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013880, intron 5 of 5)	intron (NM_013880, intron 5 of 5)	-20580.0	NM_001297747	12228.0	Mm.392910	NM_009770	ENSMUSG00000022863	Btg3	ANA|tob5	B cell translocation gene 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-115640246-2	chr4	115640145	115640345	+	642.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_007823, intron 4 of 11)	(CTGGGG)n|Simple_repeat|Simple_repeat	7460.0	NM_007823	13120.0	Mm.1840	NM_007823	ENSMUSG00000028713	Cyp4b1	-	cytochrome P450, family 4, subfamily b, polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-61794969-4	chr11	61794873	61795073	+	994.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013881, intron 20 of 26)	intron (NM_013881, intron 20 of 26)	-32885.0	NM_001164243	212627.0	Mm.27703	NM_144806	ENSMUSG00000020528	Prpsap2	A230054F23Rik	phosphoribosyl pyrophosphate synthetase-associated protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-67553074-4	chr13	67552930	67553130	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_131100)	promoter-TSS (NR_131100)	122.0	NM_001035231	212276.0	Mm.422831	NM_183145	ENSMUSG00000095432	Zfp748	KRAB-O|Rslcan20/21|Zfp208|mszf54	zinc finger protein 748	protein-coding	2.10652764699243	2.39891575149223	2.19520082317072	1.04697590978772	1.9043600163099	1.11533219925997	3.14278809169849	1.051830018025	0.228559248129613	0.847090154190672	0.998431161219273
Merged-chr6-124202352-4	chr6	124202267	124202467	+	982.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001104642, intron 3 of 5)	intron (NM_001104642, intron 3 of 5)	29417.0	NM_001104642	232367.0	Mm.469872	NM_001104642	ENSMUSG00000072778	Vmn2r27	EG232367	vomeronasal 2, receptor27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-9110538-4	chr4	9110424	9110624	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB2|LINE|L1	-158769.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-86063698-4	chr17	86063586	86063786	+	874.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030133, intron 14 of 20)	intron (NM_030133, intron 14 of 20)	81489.0	NM_030133	78586.0	Mm.146236	NM_030133	ENSMUSG00000024135	Srbd1	AI461933|C85414|D530025C17Rik	S1 RNA binding domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-19629520-2	chr2	19629420	19629620	+	683.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	28377.0	NR_033642	100041244.0	Mm.407223	NR_033642		Gm3230	-	predicted gene 3230	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-74825889-4	chr2	74825811	74826011	+	986.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016804)	promoter-TSS (NM_016804)	99.0	NM_016804	53375.0	Mm.292613	NM_016804	ENSMUSG00000027099	Mtx2	1500012G02Rik	metaxin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-9926282-4	chr2	9926189	9926389	+	939.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027748, intron 4 of 6)	intron (NM_027748, intron 4 of 6)	20140.0	NR_152218	100126244.0	Mm.86343	NR_152218		Gm13262	-	predicted gene 13262	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-46893257-4	chr17	46893153	46893353	+	879.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_178385)	TTS (NM_178385)	2632.0	NM_178385	72726.0	Mm.33780	NM_178385	ENSMUSG00000036430	Tbcc	2810055C19Rik	tubulin-specific chaperone C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-12976131-2	chr18	12976031	12976231	+	798.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357396, intron 3 of 10)	B2_Mm2|SINE|B2	1671.0	NM_001357396	16210.0	Mm.8154	NM_008378	ENSMUSG00000024423	Impact	E430016J11Rik	impact, RWD domain protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-102268555-2	chr7	102268455	102268655	+	575.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009287, intron 1 of 11)	intron (NM_009287, intron 1 of 11)	731.0	NM_009287	20866.0	Mm.645	NM_009287	ENSMUSG00000030987	Stim1	SIM	stromal interaction molecule 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-181930331-3	chr2	181930228	181930428	+	887.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR33|LTR|ERVK	-60898.0	NM_001205282	672125.0	Mm.489571	NM_001205282	ENSMUSG00000098505	Gm14496	-	predicted gene 14496	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-20036874-7	chr10	20036771	20036971	+	880.8214109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008580, intron 7 of 29)	intron (NM_008580, intron 7 of 29)	102345.0	NM_008580	26408.0	Mm.6595	NM_008580	ENSMUSG00000071369	Map3k5	7420452D20Rik|ASK|ASK1|MAPKKK5|Mekk5	mitogen-activated protein kinase kinase kinase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-57249442-4	chr17	57249327	57249527	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134125)	promoter-TSS (NM_134125)	-24.0	NM_001242391	106628.0	Mm.37368	NM_134125	ENSMUSG00000019487	Trip10	AI646975|Cip4	thyroid hormone receptor interactor 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-121130238-4	chr6	121130134	121130334	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001270475, intron 1 of 31)	intron (NM_001270475, intron 1 of 31)	788.0	NM_001270475	194401.0	Mm.122399	NM_153396	ENSMUSG00000051586	Mical3	C130040D16Rik|Mical-3|mKIAA1364	microtubule associated monooxygenase, calponin and LIM domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-90285359-4	chr16	90285239	90285439	+	905.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178923)	promoter-TSS (NM_178923)	-836.0	NM_178923	224432.0	Mm.439811	NM_178923	ENSMUSG00000022983	Scaf4	AA517739|Sfrs15|Sra4|Srsf15	SR-related CTD-associated factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-114930076-2	chr6	114929976	114930176	+	958.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356371, intron 2 of 5)	intron (NM_001356371, intron 2 of 5)	-8255.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19272921-3	chr7	19272808	19273008	+	912.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1054.0	NM_001282022	22323.0	Mm.9684	NM_009499	ENSMUSG00000030403	Vasp	-	vasodilator-stimulated phosphoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-77140311-3	chr5	77140206	77140406	+	712.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25183.0	NM_175606	74318.0	Mm.181852	NM_175606	ENSMUSG00000059325	Hopx	1110018K11Rik|1200015P04Rik|2300002F06Rik|AI848177|AW490897|Cameo|Hdop|Hod|Hop|Ob1|Obl|Toto	HOP homeobox	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-79954720-2	chr17	79954620	79954820	+	826.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58597.0	NM_001286647	56298.0	Mm.175403	NM_019717	ENSMUSG00000059811	Atl2	2010110I21Rik|AA407293|AV334690|Aip-2|Arl6ip2	atlastin GTPase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-84089388-2	chr10	84089288	84089488	+	582.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_152790, intron 1 of 4)	intron (NR_152790, intron 1 of 4)	11309.0	NR_152790	102637349.0	Mm.402869	NR_152790	ENSMUSG00000111049	Gm34184	-	predicted gene, 34184	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-88250865-2	chr1	88250765	88250965	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001281466, intron 29 of 41)	ORR1C2|LTR|ERVL-MaLR	18543.0	NR_040291	78605.0	Mm.384762	NR_040291		6430706D22Rik	-	RIKEN cDNA 6430706D22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27817419-2	chr17	27817319	27817519	+	837.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033279, intron 1 of 4)	intron (NM_001033279, intron 1 of 4)	3123.0	NM_001033279	224647.0	Mm.196577	NM_001033279	ENSMUSG00000056692	D17Wsu92e	AU020189|C030010A15|C80239	DNA segment, Chr 17, Wayne State University 92, expressed	protein-coding	2.55486770235169	2.52147185825034	2.31049867656372	2.68562176939189	2.57501174180528	2.53914636416908	2.32737348672058	2.69880286299019	0.0370572125577121	0.960295318536691	0.998431161219273
Merged-chr18-68031076-3	chr18	68030983	68031183	+	832.716675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172631, intron 1 of 5)	MTD|LTR|ERVL-MaLR	97910.0	NM_172631	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-120865552-2	chr5	120865408	120865608	+	603.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145228, intron 2 of 5)	intron (NM_145228, intron 2 of 5)	4086.0	NM_145228	246729.0	Mm.115351	NM_145228	ENSMUSG00000001168	Oas1h	-	2'-5' oligoadenylate synthetase 1H	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-17178073-2	chr10	17177961	17178161	+	831.5	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-82279.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-3130909-2	chr11	3130818	3131018	+	1000.0	f0_balb.idr|f1_balb.idr	TTS (NM_030207)	TTS (NM_030207)	6897.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-105730733-3	chr5	105730617	105730817	+	852.322205	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178701, intron 1 of 2)	MIRb|SINE|MIR	29907.0	NM_178701	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-58282726-4	chr11	58282627	58282827	+	770.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24342.0	NM_182996	103836.0	Mm.41440	NM_182996	ENSMUSG00000037243	Zfp692	AI746306|AI839920|Zfp692-ps|Znf692	zinc finger protein 692	protein-coding	0.879291003371335	2.06032007346914	1.86153838761111	1.67256941753346	1.58962632043977	2.62320145736132	0.939928927641131	0.917797311549003	0.142946074421939	0.911849051000567	0.998431161219273
Merged-chr2-45087181-2	chr2	45087081	45087281	+	938.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355291, intron 2 of 9)	intron (NM_001355291, intron 2 of 9)	23096.0	NM_001289521	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-155787111-3	chr2	155787032	155787232	+	561.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010808, intron 1 of 8)	MTD|LTR|ERVL-MaLR	11790.0	NM_010808	17391.0	Mm.389325	NM_010808	ENSMUSG00000027612	Mmp24	AU040325|MMP-21|MT5-MMP|MT5MMP|MTMMP5	matrix metallopeptidase 24	protein-coding	2.36530186653815	2.64998856645594	2.33736269466294	2.27294766833968	2.77572694004489	2.29643650746437	1.43747301199237	2.59825557186635	-0.0630943195652463	0.941861901108717	0.998431161219273
Merged-chr10-80341894-2	chr10	80341794	80341994	+	555.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001285435, exon 11 of 13)	exon (NM_001285435, exon 11 of 13)	6554.0	NM_001285435	66548.0	Mm.71891	NM_025629	ENSMUSG00000043822	Adamtsl5	2010109H09Rik|Thsd6	ADAMTS-like 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3773243-2	chr4	3773134	3773334	+	767.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 10 of 12)	L1MB3|LINE|L1	58270.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	-0.583449067377857	-1.02282152578373	-1.03400008326803	-1.03822883962362	-0.777224525718346	-1.02039908574442	-1.03146950288059	-1.03789690212328	-0.791518325477985	0.808258493497815	1
Merged-chr6-102090635-2	chr6	102090535	102090735	+	581.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3C|LINE|L1	-175465.0	NR_131018	75893.0	Mm.2968	NR_131017	ENSMUSG00000107563	4930587E11Rik	4930523E13Rik|Gm44188	RIKEN cDNA 4930587E11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-100201473-2	chr12	100201373	100201573	+	814.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001313934, intron 1 of 5)	intron (NM_001313934, intron 1 of 5)	1329.0	NM_001313934	12313.0	Mm.285993	NM_009790	ENSMUSG00000001175	Calm1	AI256814|AI327027|AI461935|AL024000|CaM|Calm|Cam1	calmodulin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4131108-2	chr19	4131008	4131208	+	728.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001078649, intron 6 of 7)	intron (NM_001078649, intron 6 of 7)	5148.0	NM_025889	66990.0	Mm.276255	NM_025889		Tmem134	2410001H17Rik|AI463452	transmembrane protein 134	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34971002-3	chr17	34970907	34971107	+	576.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010479, exon 1 of 1)	exon (NM_010479, exon 1 of 1)	1149.0	NM_010479	193740.0	Mm.6388	NM_010479	ENSMUSG00000091971	Hspa1a	Hsp70-3|Hsp70.3|Hsp72|hsp68|hsp70A1	heat shock protein 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-9810363-1	chr18	9810263	9810463	+	923.0	f0_balb.idr	intron (NM_130449, intron 2 of 9)	intron (NM_130449, intron 2 of 9)	102715.0	NM_130449	140792.0	Mm.218571	NM_130449	ENSMUSG00000036103	Colec12	CL-P1|SRCL|Scara4	collectin sub-family member 12	protein-coding	-0.989786300109673	-1.23260475256842	-1.24307021483566	-1.2516668571423	-1.25947646807559	-0.900997845241277	-1.24070106357476	-1.25012806227958	0.315345637906027	0.925948014407195	1
Merged-chr6-145744953-2	chr6	145744854	145745054	+	706.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63429.0	NM_027760	71323.0	Mm.158669	NM_027760	ENSMUSG00000030259	Rassf8	5133400D11Rik|AA815821|AW123240|Hoj1|mHoj-1	Ras association (RalGDS/AF-6) domain family (N-terminal) member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118161869-2	chr11	118161769	118161969	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32650.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-41633894-1	chr7	41633794	41633994	+	1000.0	f0_c57.idr	promoter-TSS (NM_001360684)	promoter-TSS (NM_001360684)	363.0	NM_001360674	67607.0	Mm.384626	NM_023363	ENSMUSG00000074165	Zfp788	2810426N06Rik|AI256342|AI605193	zinc finger protein 788	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-26498881-4	chr2	26498817	26499017	+	847.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008714, intron 2 of 33)	intron (NM_008714, intron 2 of 33)	4905.0	NM_008714	18128.0	Mm.290610	NM_008714	ENSMUSG00000026923	Notch1	9930111A19Rik|Mis6|N1|Tan1|lin-12	notch 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-93206483-4	chr5	93206398	93206598	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017367)	promoter-TSS (NM_017367)	-3.0	NM_017367	12453.0	Mm.250419	NM_017367	ENSMUSG00000063015	Ccni	-	cyclin I	protein-coding	4.76523926862842	5.39183513808495	4.39075356383647	4.02481883127203	5.40780982076587	4.44850450807784	3.86907324726355	4.68009436827657	-0.00951416210224299	0.98279718916604	0.998431161219273
Merged-chr7-121269502-4	chr7	121269392	121269592	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-122804.0	NM_001081327	195646.0	Mm.247449	NM_177575	ENSMUSG00000046321	Hs3st2	6430516N12Rik|A830061E14Rik|AW491345	heparan sulfate (glucosamine) 3-O-sulfotransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167765355-4	chr2	167765258	167765458	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	74181.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-61229841-3	chr18	61229735	61229935	+	970.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146086, intron 1 of 21)	intron (NM_146086, intron 1 of 21)	9336.0	NM_146086	225600.0	Mm.391106	NM_146086	ENSMUSG00000024575	Pde6a	Pdea|nmf282	phosphodiesterase 6A, cGMP-specific, rod, alpha	protein-coding	2.52933712648974	1.56604232375906	2.63231298010111	2.55671664466932	2.73947079182261	2.61364482228195	3.29115017643176	3.43870312429264	1.29906228634231	0.0861039792783764	0.450993397867561
Merged-chr5-135466859-2	chr5	135466759	135466959	+	921.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_146001, intron 1 of 30)	B3|SINE|B2	-72313.0	NM_148932	107939.0	Mm.28399	NM_148932	ENSMUSG00000053293	Pom121	2610027A18Rik|C80273|mKIAA0618	nuclear pore membrane protein 121	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-60904721-2	chr1	60904621	60904821	+	740.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4304.0	NM_009843	12477.0	Mm.390	NM_009843	ENSMUSG00000026011	Ctla4	Cd152|Ctla-4|Ly-56	cytotoxic T-lymphocyte-associated protein 4	protein-coding	0.768941165316939	0.904941964998983	0.585897899647786	0.405331016194832	0.964371333493948	0.419488913577148	0.412366697370962	0.940825148051549	0.22159072458634	0.898266239145041	1
Merged-chr3-99241319-1	chr3	99241219	99241419	+	545.0	f1_c57bl6.idr	Intergenic	CpG	-12441.0	NM_009323	21384.0	Mm.88761	NM_009323	ENSMUSG00000027868	Tbx15	Tbx14|Tbx8|de	T-box 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-39845444-23	chr17	39845291	39845491	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_046233, exon 1 of 1)	non-coding (NR_046233, exon 1 of 1)	2394.0	NR_046233	100861531.0		NR_046233		Rn45s	-	45S pre-ribosomal RNA	rRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-59315389-2	chr19	59315289	59315489	+	829.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033222, intron 2 of 4)	intron (NM_001033222, intron 2 of 4)	30391.0	NM_001033222	107368.0	Mm.27250	NM_001033222	ENSMUSG00000074746	Pdzd8	A630041P07Rik|AV329468|AW228944|Pdzk8	PDZ domain containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-9407187-4	chr3	9407130	9407330	+	917.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015499, intron 1 of 1)	intron (NR_015499, intron 1 of 1)	4152.0	NR_015499	320088.0	Mm.212908	NR_015499	ENSMUSG00000097365	C030034L19Rik	A130044O20Rik	RIKEN cDNA C030034L19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124094480-2	chr5	124094380	124094580	+	679.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_019875, intron 1 of 11)	intron (NM_019875, intron 1 of 11)	1318.0	NM_019875	56325.0	Mm.254839	NM_019875	ENSMUSG00000029408	Abcb9	TAPL|mKIAA1520	ATP-binding cassette, sub-family B (MDR/TAP), member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-83971903-2	chr8	83971800	83972000	+	708.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER20|DNA|hAT-Charlie	-1078.0	NM_008854	18747.0	Mm.19111	NM_008854	ENSMUSG00000005469	Prkaca	PKCD|Pkaca	protein kinase, cAMP dependent, catalytic, alpha	protein-coding	0.284751770693331	0.690547717752621	0.301493128243409	0.295233203791045	0.446714978608903	1.19377032662213	0.499126246692513	0.876549477183305	2.65423880560677	0.149258170378035	1
Merged-chr11-102156346-4	chr11	102156235	102156435	+	982.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029649)	promoter-TSS (NM_029649)	72.0	NM_029649	76547.0	Mm.46529	NM_029649	ENSMUSG00000020921	Tmem101	2610511E22Rik	transmembrane protein 101	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-70007154-3	chr9	70007053	70007253	+	767.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_016787, exon 11 of 11)	3' UTR (NM_016787, exon 11 of 11)	-5395.0	NM_001282084	235459.0	Mm.293117	NM_199151	ENSMUSG00000033543	Gtf2a2	TFIIA-gamma|TfIIg|Tfiia2	general transcription factor II A, 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4615517-2	chr19	4615417	4615617	+	793.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_153388, exon 1 of 3)	5' UTR (NM_153388, exon 1 of 3)	150.0	NM_153388	225875.0	Mm.329675	NM_153388	ENSMUSG00000045045	Lrfn4	BC023156|Salm3	leucine rich repeat and fibronectin type III domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-5260807-2	chr10	5260707	5260907	+	585.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347711, intron 62 of 145)	GA-rich|Low_complexity|Low_complexity	-66100.0	NM_001079686	64009.0	Mm.331626	NM_022027	ENSMUSG00000096054	Syne1	8B|A330049M09Rik|BE692247|C130039F11Rik|CPG2|KASH1|Myne1|mKIAA1756|myne-1	spectrin repeat containing, nuclear envelope 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116016431-6	chr11	116016332	116016532	+	891.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-3713.0	NM_016905	14635.0	Mm.2820	NM_016905	ENSMUSG00000020766	Galk1	AA409894|GALK|Gk|Glk|Glk1	galactokinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-142478970-3	chr5	142478870	142479070	+	789.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_172725)	TTS (NM_172725)	15039.0	NM_172725	231855.0	Mm.78250	NM_172725	ENSMUSG00000039623	Ap5z1	C330006K01Rik	adaptor-related protein complex 5, zeta 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-32128051-2	chr12	32127951	32128151	+	614.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66772.0	NM_011158	19088.0	Mm.25594	NM_011158	ENSMUSG00000002997	Prkar2b	AI451071|AW061005|PKARIIbeta|Pkarb2|RII(beta)	protein kinase, cAMP dependent regulatory, type II beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-66904599-3	chr15	66904552	66904752	+	762.200012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018865, intron 1 of 4)	intron (NM_018865, intron 1 of 4)	13259.0	NM_018865	22402.0	Mm.10222	NM_018865	ENSMUSG00000005124	Wisp1	AW146261|CCN4|Elm1	WNT1 inducible signaling pathway protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-45736913-3	chr16	45736814	45737014	+	821.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001272070, exon 4 of 6)	exon (NM_001272070, exon 4 of 6)	6041.0	NM_001272070	213012.0	Mm.247453	NM_172511	ENSMUSG00000033157	Abhd10	-	abhydrolase domain containing 10	protein-coding	1.96281781514556	2.42125283986651	1.50350022103575	2.06633029347839	1.97868346596153	2.43939663090299	1.5127446136337	2.0768282785715	0.0372229101923791	0.969011184761384	0.998431161219273
Merged-chr3-138118233-2	chr3	138118132	138118332	+	895.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355052, intron 8 of 21)	intron (NM_001355052, intron 8 of 21)	13421.0	NM_008642	17777.0	Mm.2941	NM_008642	ENSMUSG00000028158	Mttp	1810043K16Rik|MTP	microsomal triglyceride transfer protein	protein-coding	1.53178785384707	1.07438423233556	2.63524219398762	1.0299864852015	1.54493338412859	1.74198941320596	1.95929473710755	2.10698952321456	0.19215910122886	0.869090067371377	0.998431161219273
Merged-chr6-50874076-4	chr6	50873983	50874183	+	901.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	97968.0	NR_045984	319981.0	Mm.131454	NR_045984	ENSMUSG00000107667	C530044C16Rik	-	RIKEN cDNA C530044C16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-53309052-1	chr11	53308952	53309152	+	790.0	f0_balb.idr	Intergenic	Intergenic	-8573.0	NM_008300	15525.0	Mm.239865	NM_008300	ENSMUSG00000020361	Hspa4	70kDa|AI317151|APG-2|Hsp110|Hsp70RY|mKIAA4025	heat shock protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101982843-2	chr15	101982744	101982944	+	671.416626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21498.0	NM_031170	16691.0	Mm.358618	NM_031170	ENSMUSG00000049382	Krt8	AA960620|AL022697|AU019895|Card2|EndoA|K8|Krt-2.8|Krt2-8	keratin 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-36656154-4	chr16	36656048	36656248	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019388, intron 1 of 7)	intron (NM_019388, intron 1 of 7)	9929.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-108767052-2	chr12	108766952	108767152	+	718.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26259.0	NM_009537	22632.0	Mm.3868	NM_009537	ENSMUSG00000021264	Yy1	AW488674|NF-E1	YY1 transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128393680-4	chr2	128393573	128393773	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028591, intron 1 of 1)	intron (NR_028591, intron 1 of 1)	35678.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-125213995-4	chr10	125213883	125214083	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	94833.0	NM_001358915	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35274250-2	chr17	35274186	35274386	+	716.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	11163.0	NM_001267808	14980.0	Mm.439675	NM_001267808		H2-L	H-2L	histocompatibility 2, D region locus L	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-168207453-4	chr2	168207357	168207557	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009628)	promoter-TSS (NM_009628)	-345.0	NM_001310088	11538.0	Mm.201322	NM_009628	ENSMUSG00000051149	Adnp	AA589558|mKIAA0784	activity-dependent neuroprotective protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-79346690-3	chr15	79346619	79346819	+	886.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001304830)	promoter-TSS (NM_001304830)	98.0	NM_001304830	17133.0	Mm.86646	NM_010755	ENSMUSG00000042622	Maff	-	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein F (avian)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-181016691-4	chr1	181016603	181016803	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010145, intron 1 of 8)	intron (NM_010145, intron 1 of 8)	866.0	NM_001312918	13849.0	Mm.9075	NM_010145	ENSMUSG00000038776	Ephx1	EH|Eph-1|Eph1|Epxh1|mEH	epoxide hydrolase 1, microsomal	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-33057445-3	chr12	33057391	33057591	+	802.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024478, intron 8 of 19)	intron (NM_001024478, intron 8 of 19)	35384.0	NM_001024478	68764.0	Mm.60083	NM_001024478	ENSMUSG00000035860	Cdhr3	1110049B09Rik|BB172694|Cdh28	cadherin-related family member 3	protein-coding	4.4059914160822	2.93813603300586	2.49849771749166	3.63417863302261	4.07139365454507	3.45886009456411	3.34085576393686	4.16814685176556	0.321069496594598	0.593783539773985	0.9706660979479
Merged-chr3-59120134-4	chr3	59120027	59120227	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001287119, intron 1 of 2)	intron (NM_001287119, intron 1 of 2)	10635.0	NM_001287124	140795.0	Mm.439021	NM_133200	ENSMUSG00000036381	P2ry14	A330108O13Rik|Gpr105|P2Y14	purinergic receptor P2Y, G-protein coupled, 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-5219507-2	chr3	5219407	5219607	+	888.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030708, intron 1 of 10)	CpG	953.0	NM_030708	80892.0	Mm.41522	NM_030708	ENSMUSG00000025255	Zfhx4	A930021B15|C130041O22Rik|Zfh-4|Zfh4	zinc finger homeodomain 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132565451-2	chr4	132565351	132565551	+	833.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081211, intron 1 of 1)	intron (NM_001081211, intron 1 of 1)	1384.0	NM_001081211	19204.0	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-55813234-3	chr16	55813130	55813330	+	578.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159395, intron 12 of 12)	intron (NM_001159395, intron 12 of 12)	8908.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19747496-4	chr7	19747381	19747581	+	969.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008990, intron 1 of 8)	intron (NM_008990, intron 1 of 8)	2092.0	NM_008990	19294.0	Mm.4341	NM_008990	ENSMUSG00000062300	Nectin2	AI325026|AI987993|Cd112|MPH|Pvr|Pvrl2|Pvs|nectin-2	nectin cell adhesion molecule 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117233424-4	chr8	117233329	117233529	+	935.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-23590.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-58445194-2	chr10	58445094	58445294	+	851.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER5|LTR|ERV1	-1658.0	NM_011240	19386.0	Mm.431695	NM_011240	ENSMUSG00000003226	Ranbp2	A430087B05Rik|AI256741|NUP358	RAN binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-22743690-2	chr2	22743590	22743790	+	947.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TGAG)n|Simple_repeat|Simple_repeat	-30637.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-81780268-2	chr12	81780168	81780368	+	941.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001174107, intron 1 of 10)	intron (NM_001174107, intron 1 of 10)	902.0	NM_177395	338372.0	Mm.35284	NM_177395	ENSMUSG00000042724	Map3k9	E130314H24Rik|Mlk1|Prke1	mitogen-activated protein kinase kinase kinase 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-121660567-4	chr5	121660528	121660728	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028227)	promoter-TSS (NM_028227)	65.0	NM_001289543	72399.0	Mm.153372	NM_028227	ENSMUSG00000029458	Brap	3010002G07Rik|BRAP2|IMP	BRCA1 associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-20952031-2	chr1	20951931	20952131	+	725.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027974, intron 1 of 10)	intron (NM_027974, intron 1 of 10)	405.0	NM_027974	71877.0	Mm.29178	NM_027974	ENSMUSG00000041809	Efhc1	1700029F22Rik|mRib72-1|myoclonin1	EF-hand domain (C-terminal) containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88445198-2	chr3	88445098	88445298	+	588.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013658, intron 10 of 14)	L2a|LINE|L2	-4247.0	NR_105978	102465611.0		NR_105978	ENSMUSG00000098655	Mir7011	Gm27677|mmu-mir-7011	microRNA 7011	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-24989088-4	chr19	24988990	24989190	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10439.0	NM_028785	76088.0	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	4.37521565304516	3.55731065956977	4.87821097599309	5.25548773992709	4.64299653232884	3.58599076535842	5.05715277430468	4.73904300182511	-0.061012769738154	0.893852999555271	0.998431161219273
Merged-chr1-180847733-2	chr1	180847633	180847833	+	630.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-3418.0	NM_145943	208768.0	Mm.272625	NM_145943	ENSMUSG00000038806	Sde2	-	SDE2 telomere maintenance homolog (S. pombe)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-170903562-4	chr1	170903472	170903672	+	998.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR78|LTR|ERV1	9369.0	NM_001029984	435653.0	Mm.337931	NM_001029984	ENSMUSG00000070524	Fcrlb	FREB-2|FREB2|FcRL2|Fcrlm2|Fcry|mFCRL2	Fc receptor-like B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101899603-2	chr7	101899503	101899703	+	905.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_027532)	TTS (NM_027532)	3272.0	NM_001291349	75430.0	Mm.284491	NM_027532	ENSMUSG00000030649	Anapc15	3200002M19Rik|6330414C15Rik|APC15	anaphase prompoting complex C subunit 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-156014952-3	chr1	156014863	156015063	+	733.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160018, intron 8 of 9)	intron (NM_001160018, intron 8 of 9)	19854.0	NM_001160019	208263.0	Mm.211654	NM_144791	ENSMUSG00000026466	Tor1aip1	LAP1|Lap1B	torsin A interacting protein 1	protein-coding	1.13582368062221	2.22860903372236	1.21719377182843	2.15983805389839	1.80049266476054	1.79566278481659	0.986101710694973	1.19263126230767	-0.873133536961868	0.465028003461239	0.922521920152562
Merged-chr3-116186616-4	chr3	116186519	116186719	+	730.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56931.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-26205298-2	chr6	26205198	26205398	+	715.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	273872.0	NR_040771	626904.0	Mm.126787	NR_040771	ENSMUSG00000106799	Gm20756	-	predicted gene, 20756	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-35093586-2	chr18	35093486	35093686	+	578.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16C|LTR|ERVL	-25326.0	NM_009818	12385.0	Mm.18962	NM_009818	ENSMUSG00000037815	Ctnna1	2010010M04Rik|AA517462|AI988031|Catna1	catenin (cadherin associated protein), alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-99965640-4	chr5	99965559	99965759	+	746.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077265, intron 4 of 8)	intron (NM_001077265, intron 4 of 8)	13279.0	NM_001077266	11991.0	Mm.150231	NM_007516	ENSMUSG00000000568	Hnrnpd	Auf1|Hnrpd	heterogeneous nuclear ribonucleoprotein D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-143696404-3	chr7	143696314	143696514	+	722.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199227, intron 14 of 21)	B3|SINE|B2	-10539.0	NR_131763	79201.0	Mm.290780	NM_024290	ENSMUSG00000037613	Tnfrsf23	SOB|TNFRSFH23|Tnfrh1|Tnfrsf1al1|mDcTRAILR1|mSOB	tumor necrosis factor receptor superfamily, member 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19218086-3	chr7	19218024	19218224	+	862.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175668, intron 1 of 1)	intron (NM_175668, intron 1 of 1)	5586.0	NM_175668	319197.0	Mm.135984	NM_175668	ENSMUSG00000044317	Gpr4	-	G protein-coupled receptor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-106901618-4	chr1	106901510	106901710	+	958.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32839.0	NM_027971	71869.0	Mm.321740	NM_027971	ENSMUSG00000059956	Serpinb12	2300003F07Rik|4833409F13Rik	serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), member 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34629291-1	chr17	34629191	34629391	+	617.0	f1_balb.idr	promoter-TSS (NM_030890)	promoter-TSS (NM_030890)	-395.0	NM_030890	260297.0	Mm.390965	NM_030890	ENSMUSG00000015476	Prrt1	Bat-4|Bat4|D17H6S54E|DSPD1|G5b|NG5|ORF31|SynDIG4	proline-rich transmembrane protein 1	protein-coding	-0.859082918983678	-0.988263333422384	-1.00040322824838	-1.00311683473178	-1.00626376281094	-0.985632567570811	-0.997655022158689	-0.350334081862082	2.02436496650785	0.517018710074872	1
Merged-chr4-44973615-4	chr4	44973521	44973721	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7773.0	NM_080289	76238.0	Mm.196574	NM_080289	ENSMUSG00000035637	Grhpr	1110059D05Rik|6430629L09Rik|Glxr	glyoxylate reductase/hydroxypyruvate reductase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-140287251-2	chr4	140287151	140287351	+	588.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40440.0	NM_198610	230868.0	Mm.298731	NM_198610	ENSMUSG00000040972	Igsf21	BC055811|Gm141	immunoglobulin superfamily, member 21	protein-coding	-0.700064241511417	-0.186671140929496	-0.692852367725508	-0.695563882069579	-0.699394869705802	-0.177296101845517	-0.692077155152847	-0.695090216270211	0.0394491945098347	0.989215944639676	1
Merged-chr4-88390131-4	chr4	88389959	88390159	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081184, intron 35 of 43)	intron (NM_001081184, intron 35 of 43)	48867.0	NM_025760	66775.0	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	1.98449083788823	2.40413957563776	2.66955072569014	1.25965076651813	2.4691016275588	2.89060734714778	3.47602880791351	1.26592811308202	1.12939326720172	0.245667873733093	0.745076630194553
Merged-chr10-84571305-4	chr10	84571211	84571411	+	981.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5636.0	NM_146008	216198.0	Mm.296142	NM_146008	ENSMUSG00000020034	Tcp11l2	E430026E19Rik	t-complex 11 (mouse) like 2	protein-coding	4.17982089689571	4.21327996079282	3.54724316185506	3.96939052645566	4.29595178177084	4.47275296853321	3.57572715811475	3.98899986232343	0.165756588460735	0.714516000563098	0.998431161219273
Merged-chr9-15301581-4	chr9	15301483	15301683	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133732)	promoter-TSS (NM_133732)	24.0	NM_133732	70984.0	Mm.261842	NM_133732	ENSMUSG00000031938	4931406C07Rik	-	RIKEN cDNA 4931406C07 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78579648-4	chr15	78579557	78579757	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155437, intron 1 of 1)	intron (NR_155437, intron 1 of 1)	1932.0	NR_155437	102640742.0	Mm.253544	NR_155437	ENSMUSG00000116097	Gm36738	-	predicted gene, 36738	ncRNA	0.126184680486748	0.727211794615972	0.171995318782376	-0.0127459943876751	0.560792645627975	-0.00150377066038043	-0.00715622281052322	-0.0119860048817113	-0.8607142686143	0.684052691860005	1
Merged-chr13-98946746-4	chr13	98946663	98946863	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1A|DNA|hAT-Charlie	-20379.0	NM_178716	238799.0	Mm.173286	NM_178716	ENSMUSG00000009470	Tnpo1	AU021749|D13Ertd688e|IPO2|Kpnb2|MIP|MIP1|TRN	transportin 1	protein-coding	1.90006321223426	2.6675514036867	1.14149534314348	2.57068703906098	2.45280928538625	1.67862792879658	1.62201519655428	1.12195857598856	-0.920721967442567	0.405380981758204	0.890689968099425
Merged-chr17-31871087-1	chr17	31870987	31871187	+	651.0	f0_balb.idr	Intergenic	Intergenic	-15283.0	NM_010831	17691.0	Mm.290941	NM_010831	ENSMUSG00000024042	Sik1	Hrt-20|Msk|Sik|Sik-1|Snf1lk	salt inducible kinase 1	protein-coding	0.0574499258598639	0.0809502684604565	0.0733355933161952	1.10867686655226	0.0589400486354753	0.642299411358164	0.450596367236023	0.0684452035629086	-0.586275494479135	0.782460562531156	1
Merged-chr2-93566359-4	chr2	93566215	93566415	+	956.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-76119.0	NM_007442	11695.0	Mm.389389	NM_007442	ENSMUSG00000040310	Alx4	lst	aristaless-like homeobox 4	protein-coding	1.85189312193451	2.22150728839033	2.24669879521992	2.76982754437773	1.86852519153658	1.13550613033427	1.10778493859547	1.32721184732543	-2.57443941364106	0.0193882541354325	0.175997555130228
Merged-chr17-71471574-2	chr17	71471474	71471674	+	649.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028887, intron 1 of 47)	RMER6A|LTR|ERVK	3769.0	NM_028887	74355.0	Mm.194450	NM_028887	ENSMUSG00000024054	Smchd1	4931400A14Rik|AW554188|MommeD1|mKIAA0650	SMC hinge domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-54233453-2	chr14	54233348	54233548	+	940.18335	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20481.0	NM_001113358	13135.0	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-86827390-1	chr8	86827290	86827490	+	673.0	f0_balb.idr	Intergenic	RMER19C|LTR|ERVK	57868.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	1.26156683244836	0.814314634205413	0.796246147911425	1.7958991677775	2.23575353841709	1.45322583347388	1.23286628921195	0.784453973891411	0.989074214624066	0.477974008130194	0.928092227925527
Merged-chr12-69482519-2	chr12	69482419	69482619	+	910.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6969.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-83594336-2	chr14	83594236	83594436	+	581.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2B|LINE|L1	480954.0	NR_153783	102635012.0	Mm.399509	NR_153783	ENSMUSG00000115043	Gm32455	-	predicted gene, 32455	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-44265982-4	chr12	44265869	44266069	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14|LTR|ERV1	-3185.0	NM_026164	67452.0	Mm.54126	NM_026164	ENSMUSG00000036257	Pnpla8	1200006O19Rik|AI467579|Ipla2(gamma)	patatin-like phospholipase domain containing 8	protein-coding	4.71464433515816	5.59472272849403	4.99457092154387	5.16958406180875	4.75012400801033	5.06165602892561	4.41729542342788	4.64474930023634	-0.495925972252414	0.148270087708262	0.598971216270614
Merged-chr1-87828501-4	chr1	87828375	87828575	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009118, intron 10 of 15)	intron (NM_009118, intron 10 of 15)	24795.0	NM_009118	20215.0	Mm.1276	NM_009118	ENSMUSG00000056055	Sag	A930001K18Rik|Arr1|Irbp|arrestin	S-antigen, retina and pineal gland (arrestin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-88635691-2	chr5	88635591	88635791	+	808.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359208, intron 11 of 13)	PB1D11|SINE|Alu	39889.0	NM_001098476	231413.0	Mm.332474	NM_178700	ENSMUSG00000044221	Grsf1	BB232551|C80280|D5Wsu31e	G-rich RNA sequence binding factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-37218147-3	chr13	37218076	37218276	+	929.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-127169.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-12931665-2	chr13	12931565	12931765	+	635.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPEY3-int|LTR|ERVK	73665.0	NM_031191	18811.0	Mm.88796	NM_031191	ENSMUSG00000079092	Prl2c2	Ghd2|MRP-1|PLF-1|Plf|Plf1	prolactin family 2, subfamily c, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-111189335-4	chr10	111189218	111189418	+	948.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003717, intron 1 of 22)	MTC|LTR|ERVL-MaLR	24516.0	NM_175489	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-92675984-4	chr1	92675891	92676091	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27150.0	NM_153114	260301.0	Mm.219545	NM_153114	ENSMUSG00000044055	Otos	OTOSP	otospiralin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80228519-2	chr10	80228419	80228619	+	561.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023431, intron 2 of 13)	intron (NM_023431, intron 2 of 13)	1921.0	NM_023431	68114.0	Mm.273418	NM_023431	ENSMUSG00000020156	Mum1	2610019J09|9430059D04Rik|UBE-1C2	melanoma associated antigen (mutated) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-76345949-3	chr12	76345856	76346056	+	847.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21065.0	NM_001101471	238276.0	Mm.311452	NM_001101471	ENSMUSG00000021057	Akap5	3526401B18Rik|AKAP 150|AKAP-5|AKAP150|BB098886|Gm258|P150	A kinase (PRKA) anchor protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-93124227-3	chr1	93124123	93124323	+	819.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11017.0	NM_001276710	11611.0	Mm.7457	NM_016702	ENSMUSG00000026272	Agxt	AGT|Agt1|Agxt1|SPT	alanine-glyoxylate aminotransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-89043136-4	chr1	89043038	89043238	+	814.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	27025.0	NR_040471	73475.0	Mm.491040	NR_040471	ENSMUSG00000099378	1700067G17Rik	-	RIKEN cDNA 1700067G17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-115715038-4	chr3	115714901	115715101	+	950.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007901)	promoter-TSS (NM_007901)	54.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85710006-2	chr12	85709906	85710106	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_016767)	TTS (NM_016767)	23286.0	NM_016767	53314.0	Mm.6672	NM_016767	ENSMUSG00000034266	Batf	B-ATF|SFA-2	basic leucine zipper transcription factor, ATF-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19335847-4	chr7	19335753	19335953	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-9218.0	NM_001127324	13870.0	Mm.280913	NM_007948	ENSMUSG00000003549	Ercc1	Ercc-1	excision repair cross-complementing rodent repair deficiency, complementation group 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-6151439-2	chr7	6151339	6151539	+	816.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013012, intron 1 of 2)	intron (NM_001013012, intron 1 of 2)	4532.0	NM_001013012	67109.0	Mm.3254	NM_001013012	ENSMUSG00000046792	Zfp787	2210018M03Rik|Znf787	zinc finger protein 787	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-82589103-2	chr18	82589003	82589203	+	777.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	34595.0	NM_001025254	17196.0	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-167268838-3	chr1	167268794	167268994	+	793.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030724, intron 1 of 6)	intron (NM_030724, intron 1 of 6)	16233.0	NM_030724	80914.0	Mm.280895	NM_030724	ENSMUSG00000026558	Uck2	AA407809|AI481316|AU018180|AU020720|TSA903|UK|UMK|Umpk	uridine-cytidine kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-16549258-2	chr16	16549158	16549358	+	560.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301817, intron 1 of 16)	intron (NM_001301817, intron 1 of 16)	10961.0	NM_139232	224014.0	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128749241-1	chr2	128749141	128749341	+	579.0	f1_c57bl6.idr	intron (NM_008587, intron 4 of 18)	Charlie2b|DNA|hAT-Charlie	50326.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	-0.177733621508433	-0.805752184127899	-0.808838537208662	-0.811215655782965	-0.543043920694761	-0.803068160812789	-0.808158328395888	-0.810800640862464	-1.36685470224649	0.652602213394196	1
Merged-chr11-115358817-2	chr11	115358717	115358917	+	822.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_175454, intron 5 of 18)	intron (NM_175454, intron 5 of 18)	8902.0	NM_175454	217310.0	Mm.205707	NM_175454	ENSMUSG00000034586	Hid1	C630004H02Rik	HID1 domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101310833-4	chr7	101310722	101310922	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6264.0	NM_001360460	56018.0	Mm.28896	NM_019990	ENSMUSG00000030688	Stard10	AV048538|CGI-52|NY-C0-28|PC-TP2|PCTP2|Pctpl|Sdccag28|SdccagG28|TISP-81	START domain containing 10	protein-coding	3.92348948790995	4.2016332768204	5.42016139006966	3.13343532091267	4.47430143660558	4.23216750832939	5.30136677785155	3.15227484624661	0.0799677964016907	0.887560132537727	0.998431161219273
Merged-chr9-107634160-4	chr9	107634065	107634265	+	768.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008138, intron 1 of 8)	intron (NM_008138, intron 1 of 8)	1177.0	NM_008138	14678.0	Mm.196464	NM_008138	ENSMUSG00000032562	Gnai2	C76432|Galphai2|Gia|Gnai-2	guanine nucleotide binding protein (G protein), alpha inhibiting 2	protein-coding	1.06540324625502	0.941008809135054	1.57224227898689	1.73082294927863	1.21807222977344	1.6439667414752	1.30982282301321	1.64255895650633	0.323360633047789	0.792552119028431	0.998431161219273
Merged-chr6-113837957-4	chr6	113837870	113838070	+	820.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001036684, intron 2 of 19)	intron (NM_001036684, intron 2 of 19)	53569.0	NM_001036684	11941.0	Mm.321755	NM_009723	ENSMUSG00000030302	Atp2b2	D6Abb2e|Gena300|PMCA2|Tmy|dfw|jog|wms|wri	ATPase, Ca++ transporting, plasma membrane 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-105821471-3	chr12	105821360	105821560	+	952.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011112, intron 15 of 21)	intron (NM_011112, intron 15 of 21)	36763.0	NM_001347440	18789.0	Mm.255877	NM_011112	ENSMUSG00000021111	Papola	Pap|PapIII|Plap	poly (A) polymerase alpha	protein-coding	-0.497746507194733	-0.938435289213567	-0.948034780176545	-0.950031839044665	-0.812077652772406	-0.753405515514488	-0.947436821632667	-0.949683460895302	-0.726568189127974	0.805479066864491	1
Merged-chr6-56909098-4	chr6	56909023	56909223	+	914.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360963, intron 1 of 9)	intron (NM_001360963, intron 1 of 9)	-7237.0	NM_001252374	107569.0	Mm.158936	NM_026004	ENSMUSG00000029780	Nt5c3	1600024P05Rik|2610206B05Rik|3110004A18Rik|AI842776|Nt5c3a|Nt5y|P5'N-1|P5N-1|PN-1|PN-I|PSN1|UMPH|Umph-1|Umph1|cN-III|lupin|p36	5'-nucleotidase, cytosolic III	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-107630746-4	chr3	107630647	107630847	+	880.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153563, intron 1 of 20)	intron (NM_153563, intron 1 of 20)	963.0	NM_153563	229707.0	Mm.278643	NM_153563	ENSMUSG00000014601	Strip1	6330569M22Rik|6530401O14Rik|Fam40a	striatin interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-125477727-2	chr7	125477613	125477813	+	701.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360659, intron 2 of 7)	intron (NM_001360659, intron 2 of 7)	13829.0	NM_001360659	67711.0	Mm.4467	NM_026330	ENSMUSG00000030750	Nsmce1	2510027N19Rik	NSE1 homolog, SMC5-SMC6 complex component	protein-coding	-0.355102099045913	-1.08800443761493	-1.10000538458774	-1.10823191762646	-1.11144624499335	-1.08540378234277	-1.09728863324636	-1.10783509528487	-2.90772050925769	0.391763856616344	1
Merged-chr18-65534254-3	chr18	65534084	65534284	+	924.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_105742, intron 1 of 6)	intron (NR_105742, intron 1 of 6)	-46046.0	NM_207255	328977.0	Mm.286232	NM_207255	ENSMUSG00000042439	Zfp532	C530030I18Rik|Znf532|mKIAA1629	zinc finger protein 532	protein-coding	0.675578998574228	0.389974893482078	0.588186778077282	0.371813395562348	0.683663395873417	0.39225191212774	1.59683341810973	0.874998312118555	2.48258214899996	0.144843034567925	1
Merged-chr2-3422657-2	chr2	3422557	3422757	+	870.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355205)	promoter-TSS (NM_001355205)	-9.0	NM_008579	104362.0	Mm.2688	NM_008579	ENSMUSG00000026650	Meig1	MLZ-278|Meg1	meiosis expressed gene 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-172619425-4	chr1	172619334	172619534	+	773.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13540.0	NM_026725	68440.0	Mm.33024	NM_026725	ENSMUSG00000026544	Dusp23	1300005N15Rik|LDP-3	dual specificity phosphatase 23	protein-coding	-0.708067439731862	-1.04776773859242	-0.891691772734346	-1.06381774556393	-1.06637580156124	-1.0454043736417	-0.887571956433178	-1.06350050560954	-1.50183254253061	0.617552213998559	1
Merged-chr11-72926581-2	chr11	72926481	72926681	+	667.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001045536, exon 55 of 55)	3' UTR (NM_001045536, exon 55 of 55)	-34588.0	NM_016745	53313.0	Mm.6306	NM_016745	ENSMUSG00000020788	Atp2a3	SERCA3b|Serca3	ATPase, Ca++ transporting, ubiquitous	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-180107473-2	chr2	180107373	180107573	+	828.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1A|DNA|hAT-Charlie	-3066.0	NM_133849	99296.0	Mm.285360	NM_133849	ENSMUSG00000039059	Hrh3	AW049250|H3R|HH3R	histamine receptor H3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-102671911-4	chr15	102671831	102672031	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026468)	promoter-TSS (NM_026468)	-65.0	NR_030460	751542.0		NR_030460	ENSMUSG00000076009	Mir688	Mirn688|mmu-mir-688	microRNA 688	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44603653-4	chr9	44603552	44603752	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER89|LTR|ERV1	-1240.0	NM_001110826	13209.0	Mm.267061	NM_007841	ENSMUSG00000032097	Ddx6	1110001P04Rik|C430015D01Rik|E230023J21Rik|HLR2|mRCK/P54|p54|rck	DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-24160001-3	chr6	24159901	24160101	+	929.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019481, intron 1 of 14)	intron (NM_019481, intron 1 of 14)	8091.0	NM_019481	55961.0	Mm.19299	NM_019481	ENSMUSG00000029700	Slc13a1	AI314066|AI987826|NaSi-1|Nas1	solute carrier family 13 (sodium/sulfate symporters), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180484273-2	chr1	180484173	180484373	+	905.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081227)	promoter-TSS (NM_001081227)	-769.0	NM_001081227	381310.0	Mm.44791	NM_001081227	ENSMUSG00000053963	Stum	6330403A02Rik|Gm10001|R75555	mechanosensory transduction mediator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71379104-1	chr8	71379004	71379204	+	683.5	f1_balb.idr	intron (NM_010150, intron 1 of 3)	intron (NM_010150, intron 1 of 3)	2848.0	NM_010150	13864.0	Mm.28989	NM_010150	ENSMUSG00000002393	Nr2f6	AV090102|COUP-TF3|EAR2|Erbal2	nuclear receptor subfamily 2, group F, member 6	protein-coding	0.259255712108599	0.103927096759727	0.0941988480736102	0.0865615108272699	0.0755607013174019	0.988746341142407	1.30042871747733	0.087904301361209	3.7213219964449	0.0678556050857077	1
Merged-chr9-116366346-4	chr9	116366261	116366461	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	177181.0	NR_152204	100043817.0	Mm.404276	NR_152204		Gm4668	-	predicted gene 4668	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-78373031-7	chr10	78372896	78373096	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21296.0	NM_053014	28169.0	Mm.141230	NM_053014	ENSMUSG00000001211	Agpat3	AW061257|AW493985|D10Jhu12e|lpaat3	1-acylglycerol-3-phosphate O-acyltransferase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-104410473-3	chr9	104410390	104410590	+	919.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15623.0	NR_035516	100316725.0		NR_035516	ENSMUSG00000089406	Mir2136	mmu-mir-2136	microRNA 2136	ncRNA	0.607802236104585	0.485850526094163	0.477984863237261	1.01325032133724	0.953903260352686	0.487620865677024	1.06561732435926	1.02045029202301	1.30194419203819	0.438429237224005	1
Merged-chr15-97665002-2	chr15	97664902	97665102	+	649.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MDa|LINE|L1	40820.0	NM_028003	71919.0	Mm.12255	NM_028003	ENSMUSG00000022466	Rpap3	2310042P20Rik|D15Ertd682e	RNA polymerase II associated protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-65376246-3	chr18	65376164	65376364	+	955.35553	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037294, intron 2 of 12)	intron (NM_001037294, intron 2 of 12)	17624.0	NM_001037294	225638.0	Mm.296528	NM_001037294	ENSMUSG00000032845	Alpk2	Gm549|Hak	alpha-kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-108406575-4	chr4	108406475	108406675	+	974.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_024198, exon 1 of 3)	exon (NM_024198, exon 1 of 3)	138.0	NM_024198	67305.0	Mm.20164	NM_024198	ENSMUSG00000028597	Gpx7	3110050F08Rik|AI327032|GPX6	glutathione peroxidase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-150920779-2	chr2	150920679	150920879	+	885.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027014, intron 4 of 6)	B3|SINE|B2	11185.0	NM_001163476	69270.0	Mm.271603	NM_027014	ENSMUSG00000027454	Gins1	2810418N01Rik|Gins4|PSF1|mKIAA0186	GINS complex subunit 1 (Psf1 homolog)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-47050484-2	chr19	47050384	47050584	+	780.333313	f1_balb.idr|f1_c57bl6.idr	exon (NM_027654, exon 1 of 10)	exon (NM_027654, exon 1 of 10)	422.0	NM_001360632	71041.0	Mm.35413	NM_027654	ENSMUSG00000025050	Pcgf6	4933407A11Rik|AI604840|MBLR|Rnf134	polycomb group ring finger 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-124744866-2	chr8	124744736	124744936	+	631.75	f0_balb.idr|f1_balb.idr	intron (NM_001081120, intron 1 of 1)	intron (NM_001081120, intron 1 of 1)	6973.0	NM_001081120	69627.0	Mm.271600	NM_001081120	ENSMUSG00000043068	Fam89a	2310031A18Rik	family with sequence similarity 89, member A	protein-coding	2.73962150553737	1.70083874292904	2.87523104400765	3.40967311191812	4.4827251133197	4.78243354184654	3.77113265641085	2.92755965039299	1.9916193964496	0.00229649952277691	0.0370009864918676
Merged-chr19-55740844-6	chr19	55740759	55740959	+	842.444458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001331147)	promoter-TSS (NM_001331147)	-951.0	NM_001331147	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171466769-4	chr1	171466643	171466843	+	970.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	29182.0	NM_172647	16456.0	Mm.294882	NM_172647	ENSMUSG00000038235	F11r	9130004G24|AA638916|ESTM33|JAM|JAM-1|JAM-A|Jcam|Jcam1|Ly106	F11 receptor	protein-coding	3.83476619686918	3.11506986796776	4.18838801052443	4.22255751217794	4.010879404158	3.38415375389855	3.72218860301494	2.79273976620426	-0.51223490231546	0.345392010007049	0.845991557163818
Merged-chr3-79234269-4	chr3	79234163	79234363	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045502, intron 1 of 2)	intron (NR_045502, intron 1 of 2)	21344.0	NR_045502	70924.0	Mm.444622	NR_045502	ENSMUSG00000104585	4921511C10Rik	-	RIKEN cDNA 4921511C10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-120620452-1	chr6	120620352	120620552	+	687.0	f0_balb.idr	Intergenic	RMER10A|LTR|ERVL	-45969.0	NM_001128151	330409.0	Mm.333357	NM_001128151	ENSMUSG00000071226	Cecr2	2610101O16Rik|2810409N01Rik|Gtl4|mKIAA1740	CECR2, histone acetyl-lysine reader	protein-coding	-0.17540961799256	-0.29524365353171	-0.298942012015077	-0.301780600807506	-0.0554789468777827	-0.294407000259795	0.0097147745731494	0.199175510857914	2.68920588369694	0.247140566808509	1
Merged-chr11-49271511-3	chr11	49271370	49271570	+	713.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8680.0	NM_146471	258463.0	Mm.377517	NM_146471	ENSMUSG00000059864	Olfr1393	MOR256-24	olfactory receptor 1393	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-130691546-4	chr3	130691445	130691645	+	896.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1G3|LTR|ERVL-MaLR	17899.0	NM_025509	66357.0	Mm.300697	NM_025509	ENSMUSG00000041084	Ostc	2310008M10Rik|5730557H03Rik	oligosaccharyltransferase complex subunit (non-catalytic)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-54936743-3	chr6	54936642	54936842	+	751.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001171007, intron 7 of 11)	intron (NM_001171007, intron 7 of 11)	34919.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-116100977-2	chr9	116100844	116101044	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029575, intron 5 of 6)	(CA)n|Simple_repeat|Simple_repeat	74419.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	-1.18302134691506	-1.15893813914636	-1.16954601498264	-1.01688116837571	-0.706931804553649	-1.15663936820083	-1.16714462441132	-1.17669990531683	1.47460249523148	0.657520571745587	1
Merged-chr19-44313293-4	chr19	44313213	44313413	+	954.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14|LTR|ERV1	10142.0	NR_039574	100628619.0		NR_039574	ENSMUSG00000093315	Mir5114	mmu-mir-5114|mu-mir-5114	microRNA 5114	ncRNA	4.44727294363474	3.81512303751097	3.8337334964441	4.94735087815737	2.96945185217775	2.96550915821534	3.6339722120323	2.41806961315236	-1.85188374837625	0.000760425356627265	0.015551562662751
Merged-chr13-110683844-4	chr13	110683758	110683958	+	849.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-219641.0	NR_131193	75139.0	Mm.490931	NR_131193	ENSMUSG00000114472	Gm38397	-	predicted gene, 38397	ncRNA	0.192036027218246	0.211553195203009	0.662475026310445	0.506382034272134	0.193257606003162	0.212990575000669	0.890419470878842	0.63435576128579	0.720190584069115	0.71495467051614	1
Merged-chr11-68440238-4	chr11	68440125	68440325	+	986.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177320, intron 1 of 18)	intron (NM_177320, intron 1 of 18)	8100.0	NM_177320	320207.0	Mm.244960	NM_177320	ENSMUSG00000020901	Pik3r5	AV230647|F730038I15Rik|Foap2|p101	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-68314223-1	chr8	68314123	68314323	+	651.0	f1_c57bl6.idr	intron (NM_028182, intron 4 of 8)	L1_Mus1|LINE|L1	37695.0	NM_028182	72281.0	Mm.40974	NM_028182	ENSMUSG00000053886	Sh2d4a	2210402M20Rik|SH2A	SH2 domain containing 4A	protein-coding	0.654349253398779	0.493617375265508	0.476666835459201	2.11993531212434	0.994229691999369	1.59384654936566	0.480455585108504	0.465560780145708	-0.646242429032244	0.692630099197489	0.99740158133691
Merged-chr17-47757289-4	chr17	47757192	47757392	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161723, intron 1 of 8)	intron (NM_001161723, intron 1 of 8)	19361.0	NM_001161723	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-110665388-2	chr12	110665288	110665488	+	760.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030238, intron 73 of 76)	intron (NM_030238, intron 73 of 76)	17231.0	NM_025488	66323.0	Mm.273316	NM_025488	ENSMUSG00000056508	1700001K19Rik	-	RIKEN cDNA 1700001K19 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78573639-2	chr15	78573539	78573739	+	830.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009008)	promoter-TSS (NM_009008)	-856.0	NM_009008	19354.0	Mm.1972	NM_009008	ENSMUSG00000033220	Rac2	AI323801|AI452260	Rac family small GTPase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-93082316-2	chr1	93082216	93082416	+	685.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001110315, exon 2 of 47)	exon (NM_001110315, exon 2 of 47)	164.0	NM_001294150	16560.0	Mm.276408	NM_008440	ENSMUSG00000014602	Kif1a	ATSV|C630002N23Rik|Gm1626|Kns1	kinesin family member 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91884113-2	chr16	91884013	91884213	+	546.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010587, intron 28 of 38)	intron (NM_010587, intron 28 of 38)	47517.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98918407-4	chr11	98918308	98918508	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025779, intron 9 of 11)	intron (NM_001025779, intron 9 of 11)	10257.0	NM_011799	23834.0	Mm.20912	NM_011799	ENSMUSG00000017499	Cdc6	CDC18L	cell division cycle 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6293486-4	chr19	6293382	6293582	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010119, intron 2 of 4)	intron (NM_010119, intron 2 of 4)	-12975.0	NM_001033342	240505.0	Mm.329622	NM_001033342	ENSMUSG00000024769	Cdc42bpg	BC046418|MRCKgamma	CDC42 binding protein kinase gamma (DMPK-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-108753517-2	chr9	108753417	108753617	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42477.0	NM_029634	76500.0	Mm.276336	NM_029634	ENSMUSG00000032599	Ip6k2	1500005N04Rik|AW050208|Ihpk2	inositol hexaphosphate kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-120208771-4	chr10	120208664	120208864	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026617)	promoter-TSS (NM_026617)	-62.0	NM_026617	68212.0	Mm.157426	NM_026617	ENSMUSG00000020225	Tmbim4	0610007H07Rik|AU022431	transmembrane BAX inhibitor motif containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122266159-2	chr8	122266020	122266220	+	667.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16021.0	NM_009569	22761.0	Mm.3105	NM_009569	ENSMUSG00000049577	Zfpm1	FOG|Fog1	zinc finger protein, multitype 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-71952736-4	chr9	71952633	71952833	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011544, intron 5 of 20)	MIRc|SINE|MIR	-56637.0	NM_001253863	21406.0	Mm.171615	NM_011544	ENSMUSG00000032228	Tcf12	A130037E08Rik|ALF1|HEB|HEBAlt|HTF-4|HTF4|ME1|REB|bHLHb20	transcription factor 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-122736344-4	chr10	122736280	122736480	+	944.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110218, intron 1 of 9)	intron (NM_001110218, intron 1 of 9)	57065.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-100835769-2	chr13	100835669	100835869	+	606.875	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-2342.0	NM_022885	69048.0	Mm.402215	NM_022885	ENSMUSG00000021629	Slc30a5	1810010K08Rik|AF233321|ZNT5|ZTL1|ZnT-5|Zntl1	solute carrier family 30 (zinc transporter), member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-55307992-1	chr15	55307892	55308092	+	673.5	f0_balb.idr	intron (NM_181277, intron 1 of 47)	intron (NM_181277, intron 1 of 47)	242.0	NM_181277	12818.0	Mm.297859	NM_181277	ENSMUSG00000022371	Col14a1	5730412L22Rik|AW108078	collagen, type XIV, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-118518680-2	chr2	118518533	118518733	+	704.916626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25954.0	NR_138603	171543.0	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-10689891-2	chr16	10689791	10689991	+	671.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177562, intron 19 of 22)	intron (NM_177562, intron 19 of 22)	95645.0	NM_009896	12703.0	Mm.130	NM_009896	ENSMUSG00000038037	Socs1	Cish1|Cish7|JAB|SOCS-1|SSI-1	suppressor of cytokine signaling 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-79156995-4	chr12	79156882	79157082	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009705)	TTS (NM_009705)	15476.0	NM_016800	53612.0	Mm.265929	NM_016800	ENSMUSG00000021124	Vti1b	AU015348|GES30|MVti1b|SNARE|Vti1-rp1	vesicle transport through interaction with t-SNAREs 1B	protein-coding	4.62035350298327	4.31279906706332	3.85950269449694	4.40494234126164	4.76297411673128	5.55124200005386	5.04399188475346	5.72466043047033	1.19288540692398	0.00117297679829259	0.0220355568255446
Merged-chr10-67025683-4	chr10	67025560	67025760	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110511, intron 2 of 6)	MTD|LTR|ERVL-MaLR	20585.0	NR_110511	102634101.0	Mm.445258	NR_110511	ENSMUSG00000112925	Gm31763	-	predicted gene, 31763	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-8766194-2	chr3	8766094	8766294	+	635.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-99156.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-83989444-4	chr8	83989350	83989550	+	996.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008854, intron 5 of 9)	intron (NM_008854, intron 5 of 9)	-8222.0	NM_001081415	666704.0	Mm.298091	NM_001081415	ENSMUSG00000079003	Samd1	AA589507	sterile alpha motif domain containing 1	protein-coding	1.40452280189815	0.720010840475223	0.937881385981925	1.09292077910176	1.61089060358934	0.723756867862849	2.17969959220896	0.692075927639038	1.39810999900763	0.333464797310306	0.833601405219443
Merged-chr4-106828080-3	chr4	106827953	106828153	+	757.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-23046.0	NM_001347159	329910.0	Mm.222956	NM_025590	ENSMUSG00000034853	Acot11	1110020M10Rik|2010309H15Rik|AW060409|BFIT|BFIT1|Thea|Them1|mKIAA0707	acyl-CoA thioesterase 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-57517208-4	chr11	57517065	57517265	+	818.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026342, intron 1 of 13)	MTE2a|LTR|ERVL-MaLR	1479.0	NM_001168667	67726.0	Mm.25632	NM_026342	ENSMUSG00000020523	Fam114a2	1810073G14Rik|9030624B09Rik	family with sequence similarity 114, member A2	protein-coding	1.34597971035368	2.01794480229713	0.990757959939303	1.21948213621191	1.35802239821979	1.30862446586647	2.81153474870861	2.3809527632913	1.80282540610943	0.112431611951366	0.52504564497774
Merged-chr11-87025538-4	chr11	87025442	87025642	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31780.0	NM_001005341	77864.0	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-41337173-2	chr5	41337075	41337275	+	738.5	f0_c57.idr|f1_balb.idr	Intergenic	Intergenic	370516.0	NM_001310592	100972.0	Mm.41555	NM_027295	ENSMUSG00000029128	Rab28	2700023P08Rik|AW496496	RAB28, member RAS oncogene family	protein-coding	1.6248563047366	2.79334179037904	2.2775056544349	2.10466771103723	2.19585935245526	1.66066102000757	1.13604102713467	1.11082862810149	-1.67027868651952	0.124410074054777	0.552368396864051
Merged-chr11-94031450-4	chr11	94031353	94031553	+	969.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027569, intron 2 of 28)	intron (NM_027569, intron 2 of 28)	-12752.0	NM_001025430	70834.0	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	2.45335204621061	1.44325712013517	2.1993159855817	2.48951751687322	2.04702100040904	2.29193379067747	2.77231914143665	2.98434633032256	0.794039903472576	0.36030040978574	0.856460911964629
Merged-chr9-11158759-2	chr9	11158659	11158859	+	649.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-253984.0	NM_001170787	244682.0	Mm.187021	NM_001033359	ENSMUSG00000039488	Cntn5	6720426O10Rik|A830025P08Rik|Gm507|NB-2	contactin 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-102046178-4	chr5	102046073	102046273	+	996.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 1 of 66)	intron (NM_172882, intron 1 of 66)	23748.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-51478465-4	chr1	51478374	51478574	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310549)	promoter-TSS (NM_001310549)	-75.0	NM_001310549	109019.0	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-83510896-4	chr15	83510769	83510969	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178869)	promoter-TSS (NM_178869)	38.0	NM_178869	319953.0	Mm.235007	NM_178869	ENSMUSG00000022442	Ttll1	6330444E16Rik|AV014541	tubulin tyrosine ligase-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75071535-3	chr11	75071443	75071643	+	847.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001002764, intron 13 of 18)	B3|SINE|B2	-5552.0	NR_030454	735274.0		NR_030454	ENSMUSG00000106252	Mir684-1	Mirn684-1	microRNA 684-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-77469148-2	chr11	77469048	77469248	+	618.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_139130, exon 9 of 10)	exon (NM_139130, exon 9 of 10)	5235.0	NM_139130	216961.0	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-40128688-4	chr10	40128591	40128791	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 1 of 5)	intron (NM_001114332, intron 1 of 5)	13563.0	NM_028247	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-25181769-2	chr2	25181669	25181869	+	822.6999509999999	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_025980, exon 1 of 1)	3' UTR (NM_025980, exon 1 of 1)	1011.0	NM_025980	67122.0	Mm.46539	NM_025980	ENSMUSG00000078202	Nrarp	2700054M22Rik	Notch-regulated ankyrin repeat protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-62761453-4	chr5	62761343	62761543	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178407, intron 1 of 32)	intron (NM_178407, intron 1 of 32)	4734.0	NM_178407	212285.0	Mm.244403	NM_178407	ENSMUSG00000037999	Arap2	Centd1|Gm148|mKIAA0580	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-62722500-6	chr1	62722425	62722625	+	904.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077404, intron 2 of 16)	intron (NM_001077404, intron 2 of 16)	19208.0	NM_001077407	18187.0	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-17760865-3	chr16	17760769	17760969	+	848.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145479, intron 1 of 6)	intron (NM_145479, intron 1 of 6)	1248.0	NM_001359068	224023.0	Mm.282807	NM_145479	ENSMUSG00000022750	Klhl22	2610318I18Rik|Kelchl	kelch-like 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-97746122-3	chr4	97746004	97746204	+	840.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122952, intron 1 of 10)	CpG	-31522.0	NM_001122953	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-72262998-4	chr2	72262875	72263075	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-22662.0	NM_023057	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-120533655-2	chr5	120533555	120533755	+	782.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_145853)	TTS (NM_145853)	22463.0	NM_001177594	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-40140933-3	chr12	40140828	40141028	+	871.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6700.0	NM_001146196	20259.0	Mm.2416	NM_009132	ENSMUSG00000002565	Scin	AW545522|adseverin	scinderin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-7000014-2	chr19	6999914	7000114	+	669.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_027351)	TTS (NR_027351)	3883.0	NR_027351	107328.0	Mm.391161	NM_153597	ENSMUSG00000047656	Trpt1	AU079016|AW045591|Tpt1|Tpt1h	tRNA phosphotransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-61986650-3	chr15	61986503	61986703	+	894.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177353, intron 1 of 2)	CpG	1262.0	NM_001177352	17869.0	Mm.2444	NM_010849	ENSMUSG00000022346	Myc	AU016757|Myc2|Niard|Nird|bHLHe39	myelocytomatosis oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-23787632-4	chr5	23787533	23787733	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177323)	promoter-TSS (NM_177323)	-78.0	NM_177323	72772.0	Mm.133300	NM_177323	ENSMUSG00000028999	Rint1	1500019C06Rik|2810450M21Rik|Rint-1	RAD50 interactor 1	protein-coding	1.76720728419759	1.58329157466922	2.67334935267578	2.43254372057715	1.78115095112467	1.59320832479589	2.42770774806639	2.44526401372991	-0.187925209111367	0.842948531011199	0.998431161219273
Merged-chr8-41006473-3	chr8	41006386	41006586	+	922.194458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005863, intron 7 of 13)	intron (NM_001005863, intron 7 of 13)	-10982.0	NR_015457	78849.0	Mm.440930	NR_015457	ENSMUSG00000084960	B430010I23Rik	-	RIKEN cDNA B430010I23 gene	ncRNA	2.97287378103336	1.82423522091731	1.74824326491281	1.68581845936885	3.5886036066001	2.68286552070701	4.32534623091654	3.96126950735776	2.63330902696068	0.000490147569466255	0.0109716241389107
Merged-chr5-110841209-3	chr5	110841105	110841305	+	826.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016681, intron 1 of 14)	intron (NM_016681, intron 1 of 14)	1188.0	NM_016681	50883.0	Mm.279308	NM_016681	ENSMUSG00000029521	Chek2	CHK2|Cds1|HUCDS1|Rad53	checkpoint kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101316177-4	chr11	101316095	101316295	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011192)	promoter-TSS (NM_011192)	-18.0	NM_011192	19192.0	Mm.288477	NM_011192	ENSMUSG00000078652	Psme3	AA410043|AU020960|Ki|PA28gamma|REGgamma|pa28g	proteaseome (prosome, macropain) activator subunit 3 (PA28 gamma, Ki)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6502177-3	chr19	6502085	6502285	+	633.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205234, intron 17 of 22)	intron (NM_001205234, intron 17 of 22)	40885.0	NM_009203	20521.0	Mm.391146	NM_009203	ENSMUSG00000061742	Slc22a12	AI987855|OAT4L|Rst|Slc22al2|URAT1	solute carrier family 22 (organic anion/cation transporter), member 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-75687587-3	chr2	75687502	75687702	+	855.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010902, intron 1 of 4)	intron (NM_010902, intron 1 of 4)	17061.0	NR_132727	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-113226920-3	chr6	113226821	113227021	+	784.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	-10922.0	NM_001362183	97287.0	Mm.197816	NM_026849	ENSMUSG00000030269	Mtmr14	1110061O04Rik|AW553738|C76151	myotubularin related protein 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-82166361-2	chr12	82166261	82166461	+	620.299988	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3655.0	NM_001167983	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-6119655-3	chr8	6119572	6119772	+	972.2777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1014385.0	NM_011388	20494.0	Mm.3500	NM_011388	ENSMUSG00000023073	Slc10a2	9130221J18Rik|AI605518|ASBT|IBAT|ISBT	solute carrier family 10, member 2	protein-coding	3.23506273158425	3.84548852753353	2.83408277284704	2.51218315245281	2.6307651211161	2.95593171145467	2.29478237459736	2.52558167618604	-1.05699388252562	0.13012743804735	0.565131154087395
Merged-chr11-114893968-5	chr11	114893886	114894086	+	950.099976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347654, intron 2 of 6)	intron (NM_001347654, intron 2 of 6)	3945.0	NM_170758	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-155122065-3	chr4	155121970	155122170	+	934.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356327, intron 10 of 12)	intron (NM_001356327, intron 10 of 12)	35466.0	NM_001356327	76866.0	Mm.200590	NM_001081100	ENSMUSG00000029049	Morn1	2900057D20Rik|4930417P05Rik|AU042805	MORN repeat containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-19583222-4	chr10	19583116	19583316	+	907.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8733.0	NM_010511	15979.0	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165323399-2	chr2	165323299	165323499	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_080287, intron 1 of 20)	intron (NM_080287, intron 1 of 20)	-2573.0	NM_001302752	140579.0	Mm.35064	NM_080287	ENSMUSG00000017670	Elmo2	1190002F24Rik|CED-12	engulfment and cell motility 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-76402756-4	chr14	76402657	76402857	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12204.0	NM_001310646	21807.0	Mm.153272	NM_009366	ENSMUSG00000022010	Tsc22d1	AA589566|AW105905|Egr5|TSC-22|Tgfb1i4|Tsc|Tsc22	TSC22 domain family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-65262451-4	chr14	65262350	65262550	+	969.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021458)	promoter-TSS (NM_021458)	13.0	NM_021458	14365.0	Mm.214687	NM_021458	ENSMUSG00000007989	Fzd3	AU020229|D930050A07Rik|Fz3	frizzled class receptor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-43644398-2	chr7	43644298	43644498	+	912.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028236, intron 4 of 5)	intron (NM_028236, intron 4 of 5)	9659.0	NM_028236	72431.0	Mm.158821	NM_028236	ENSMUSG00000030472	Ceacam18	2010110O04Rik	carcinoembryonic antigen-related cell adhesion molecule 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-9671763-2	chr4	9671663	9671863	+	693.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2419.0	NM_001290367	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-143523970-2	chr7	143523870	143524070	+	563.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285490, intron 12 of 14)	intron (NM_001285490, intron 12 of 14)	-21446.0	NM_009434	22113.0	Mm.334344	NM_009434	ENSMUSG00000010760	Phlda2	Ipl|Tssc3	pleckstrin homology like domain, family A, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91963055-2	chr2	91962955	91963155	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_138306, intron 1 of 30)	intron (NM_138306, intron 1 of 30)	508.0	NM_138306	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-77058806-3	chr12	77058723	77058923	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-96575.0	NM_001146176	17187.0	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-78733622-3	chr17	78733524	78733724	+	667.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011500, intron 1 of 17)	intron (NM_011500, intron 1 of 17)	2936.0	NM_011500	268980.0	Mm.311915	NM_011500	ENSMUSG00000024077	Strn	AU022939|D130055P19	striatin, calmodulin binding protein	protein-coding	0.342398720135378	0.451236473030394	0.0755053335913819	0.0705893444467789	0.349386001812011	0.943084141277583	0.076907825509061	0.0714492924943969	1.17071580351345	0.563096422563353	1
Merged-chr9-111270382-2	chr9	111270282	111270482	+	641.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026810, intron 1 of 18)	intron (NM_026810, intron 1 of 18)	1226.0	NM_026810	17350.0	Mm.486383	NM_026810	ENSMUSG00000032498	Mlh1	1110035C23Rik|AI317206|AI325952|AI561766	mutL homolog 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-91441405-4	chr6	91441298	91441498	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045980)	promoter-TSS (NR_045980)	411.0	NR_038153	69798.0	Mm.229265	NR_038153	ENSMUSG00000100680	1810044D09Rik	-	RIKEN cDNA 1810044D09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-56749635-4	chr19	56749525	56749725	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27253.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-76363207-4	chr16	76363132	76363332	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173440, intron 1 of 3)	intron (NM_173440, intron 1 of 3)	9817.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-145105120-3	chr3	145105021	145105221	+	947.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6015.0	NM_178697	229933.0	Mm.331420	NM_178697	ENSMUSG00000036960	Clca2	4732440A06|AI586120|Clca5	chloride channel accessory 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-32230259-4	chr12	32230163	32230363	+	746.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21614.0	NM_001146200	30955.0	Mm.101369	NM_020272	ENSMUSG00000020573	Pik3cg	5830428L06Rik|PI3Kgamma|p110gamma	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding	0.17485106660482	-0.0402742311499827	0.106572543547047	0.318279581658183	0.0720104394488669	0.391871048613566	-0.0431229461180044	-0.0462251565753464	-0.342413893636623	0.867790948741203	1
Merged-chr12-102617224-2	chr12	102617124	102617324	+	605.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172584, intron 3 of 9)	intron (NM_172584, intron 3 of 9)	62283.0	NM_007693	12652.0	Mm.4137	NM_007693	ENSMUSG00000021194	Chga	ChrA|cgA	chromogranin A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-58344096-4	chr15	58344030	58344230	+	910.179199	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027211, intron 8 of 8)	intron (NM_027211, intron 8 of 8)	-19961.0	NM_177755	268807.0	Mm.124498	NM_177755	ENSMUSG00000022357	Klhl38	8230402K04Rik	kelch-like 38	protein-coding	2.79147227400227	4.11195267064705	3.40924308172711	3.57936147867428	4.03877813962489	4.43730198963104	4.40207784955147	4.41391977602121	1.09589220424183	0.0225431899345379	0.194771862338876
Merged-chr17-85018315-2	chr17	85018215	85018415	+	543.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159497, intron 5 of 5)	intron (NM_001159497, intron 5 of 5)	-10032.0	NM_009205	20532.0	Mm.227176	NM_009205	ENSMUSG00000024131	Slc3a1	D2H|NBAT|NTAA|RBAT	solute carrier family 3, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126896938-2	chr7	126896838	126897038	+	728.333374	f1_balb.idr|f1_c57bl6.idr	exon (NM_028389, exon 3 of 6)	exon (NM_028389, exon 3 of 6)	1340.0	NM_026827	68742.0	Mm.248646	NM_026827	ENSMUSG00000060538	Tmem219	1110032O16Rik|2900045G02Rik|IGFBP-3R	transmembrane protein 219	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-148322129-4	chr3	148322035	148322235	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	632500.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	3.53250959522127	3.48262575477103	3.75260704903634	3.17768053591762	4.05236026104455	2.76845890992444	3.90690185748627	2.73018679681552	0.0302133088320879	0.959298989114537	0.998431161219273
Merged-chr17-74526840-2	chr17	74526740	74526940	+	673.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1455.0	NM_007566	12211.0	Mm.442564	NM_007566	ENSMUSG00000024073	Birc6	A430032G04Rik|A430040A19Rik|AA501170|Bruce|D630005A10Rik|mKIAA1289	baculoviral IAP repeat-containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-148520937-4	chr2	148520821	148521021	+	899.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-77386.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	1.72239498114147	2.07612497879663	1.36075046655086	2.54725332656727	1.27946587377793	2.09248114763423	1.12334898703247	2.16477655549423	-0.669635568293285	0.542306064494151	0.954935047166076
Merged-chr14-31437453-2	chr14	31437353	31437553	+	679.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-1353.0	NM_011894	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167348081-4	chr2	167347977	167348177	+	984.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019835, intron 1 of 8)	intron (NM_019835, intron 1 of 8)	1101.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-137356233-2	chr4	137356133	137356333	+	947.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009861, intron 1 of 5)	PB1D9|SINE|Alu	1526.0	NM_009861	12540.0	Mm.1022	NM_009861	ENSMUSG00000006699	Cdc42	AI747189|AU018915	cell division cycle 42	protein-coding	0.773029951926048	1.39490061083982	0.803926575007321	1.5364962721904	1.35627075006853	1.7784432968054	0.807168078287718	1.5457257188136	0.903989492378088	0.524830082969053	0.948340152465298
Merged-chr6-47776498-2	chr6	47776400	47776600	+	842.0833130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER12B|LTR|ERVK	-23575.0	NR_002841	19799.0		NR_002841		Rn4.5s	-	4.5S RNA	rRNA	2.46170464350562	2.77564787439649	2.43452020033837	1.66010773399914	2.75767046617395	2.90580769169339	3.58646092532503	1.66869689785679	0.980863638804329	0.239906437015841	0.736540734959326
Merged-chr11-69465847-4	chr11	69465702	69465902	+	761.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081330, intron 39 of 85)	intron (NM_001081330, intron 39 of 85)	-52127.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-60870055-2	chr6	60869955	60870155	+	903.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40200.0	NM_009221	20617.0	Mm.17484	NM_009221	ENSMUSG00000025889	Snca	NACP|alpha-Syn|alphaSYN	synuclein, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-43910812-3	chr10	43910742	43910942	+	907.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_130892, exon 4 of 9)	exon (NM_130892, exon 4 of 9)	9035.0	NM_130892	170728.0	Mm.390253	NM_130892	ENSMUSG00000019864	Rtn4ip1	D10Ertd690e|NIMP	reticulon 4 interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-97959363-3	chr13	97959278	97959478	+	675.200012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012026, intron 22 of 35)	L1MD1|LINE|L1	208266.0	NR_152263	111365222.0	Mm.440079	NR_152263		Eyelinc18	-	uncharacterized EyeLinc18	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-17005095-4	chr11	17004997	17005197	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019549, intron 1 of 9)	RSINE1|SINE|B4	3621.0	NM_019549	56193.0	Mm.98232	NM_019549	ENSMUSG00000020120	Plek	2010300B13Rik	pleckstrin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-23410800-2	chr13	23410700	23410900	+	646.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER12B|LTR|ERVK	13066.0	NM_013924	30946.0	Mm.292094	NM_013924	ENSMUSG00000036376	Abt1	-	activator of basal transcription 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-125621907-3	chr7	125621809	125622009	+	857.6889039999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021887, intron 1 of 8)	PB1D10|SINE|Alu	18480.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-35891174-2	chr16	35891074	35891274	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19792.0	NM_001039530	547253.0	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-108762189-1	chr4	108762089	108762289	+	732.0	f0_balb.idr	intron (NM_001347163, intron 1 of 18)	intron (NM_001347163, intron 1 of 18)	18899.0	NM_001347163	230597.0	Mm.196776	NM_183300	ENSMUSG00000034557	Zfyve9	Madhip|NSP|SARA|SMADIP	zinc finger, FYVE domain containing 9	protein-coding	2.02650572567575	1.4685341848566	1.9576981041841	1.1453257037743	1.67658448765295	1.70020699414173	2.75656148998625	2.66829366226859	1.51601908002856	0.140615567177733	0.585331469539392
Merged-chr3-63970609-2	chr3	63970509	63970709	+	761.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-5534.0	NM_001033300	229363.0	Mm.331051	NM_001033300	ENSMUSG00000027823	Gmps	670032|AA591640|AI047208|Gm9479	guanine monophosphate synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97243153-3	chr11	97243061	97243261	+	864.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008942, intron 5 of 22)	intron (NM_008942, intron 5 of 22)	37415.0	NM_008942	19155.0	Mm.29824	NM_008942	ENSMUSG00000001441	Npepps	AAP-S|MP100|Psa|R74825|goku	aminopeptidase puromycin sensitive	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-125376066-4	chr5	125375975	125376175	+	985.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13942.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81426578-2	chr10	81426478	81426678	+	820.383301	f1_balb.idr|f1_c57bl6.idr	intron (NM_026756, intron 1 of 8)	intron (NM_026756, intron 1 of 8)	595.0	NM_008688	18029.0	Mm.426936	NM_008688	ENSMUSG00000055053	Nfic	1110019L22Rik|1500041O16Rik|AA589446|AI746521|NF1-C	nuclear factor I/C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-11692227-2	chr16	11692127	11692327	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028964, intron 18 of 20)	intron (NM_028964, intron 18 of 20)	-87475.0	NR_126430	73761.0	Mm.39183	NR_126430		4833415N18Rik	-	RIKEN cDNA 4833415N18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102647702-2	chr12	102647602	102647802	+	624.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172584, intron 2 of 9)	intron (NM_172584, intron 2 of 9)	37318.0	NR_035457	100316812.0		NR_035457	ENSMUSG00000089324	Mir1936	mir-1936|mmu-mir-1936	microRNA 1936	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107576923-4	chr9	107576827	107577027	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001331161)	promoter-TSS (NM_001331161)	0.0	NM_008317	15586.0	Mm.475658	NM_008317	ENSMUSG00000010051	Hyal1	Hya1|Hyal-1	hyaluronoglucosaminidase 1	protein-coding	-1.04184854797898	-0.826661376043654	-1.16931845603135	-1.0172643066186	-1.18232141276951	-1.15647818922943	-1.16692941601557	-1.17643555330034	-2.46164130920591	0.415474336993675	1
Merged-chr17-35923385-2	chr17	35923283	35923483	+	889.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001163818, exon 2 of 19)	exon (NM_001163818, exon 2 of 19)	4111.0	NM_001357740	52040.0	Mm.29385	NM_175934	ENSMUSG00000039220	Ppp1r10	2610025H06Rik|Cat53|D17Ertd808e|Fb19|Pnuts	protein phosphatase 1, regulatory subunit 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-14275127-4	chr9	14275034	14275234	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1167.0	NM_030261	75747.0	Mm.325126	NM_030261	ENSMUSG00000032009	Sesn3	5630400E15Rik|BC003348|SEST3	sestrin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-63113365-1	chr10	63113265	63113465	+	551.0	f1_c57bl6.idr	Intergenic	Intergenic	13209.0	NM_016864	53404.0	Mm.228661	NM_016864	ENSMUSG00000036816	Atoh7	Math5|bHLHa13	atonal bHLH transcription factor 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-20693273-4	chr16	20693155	20693355	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001304432)	TTS (NM_001304432)	-1802.0	NM_133778	78408.0	Mm.196512	NM_133778	ENSMUSG00000050821	Fam131a	2900046G09Rik	family with sequence similarity 131, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-86571264-2	chr11	86571164	86571364	+	911.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12894.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-151651207-4	chr5	151651123	151651323	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027009)	promoter-TSS (NM_027009)	-15.0	NM_027009	69263.0	Mm.12553	NM_027009	ENSMUSG00000033970	Rfc3	2810416I22Rik|38kDa|AU022547|Recc3	replication factor C (activator 1) 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117799738-2	chr10	117799638	117799838	+	633.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14|LTR|ERV1	-7033.0	NM_134010	103468.0	Mm.12568	NM_134010	ENSMUSG00000052798	Nup107	AW541137|C76801	nucleoporin 107	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-16169498-2	chr2	16169398	16169598	+	576.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310455, intron 35 of 38)	intron (NM_001310455, intron 35 of 38)	-186806.0	NM_026162	67448.0	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-134779529-6	chr4	134779420	134779620	+	964.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11516.0	NM_145554	100017.0	Mm.27486	NM_145554	ENSMUSG00000037295	Ldlrap1	AA691260|ARH2|Arh|Arh1|FHCB1|FHCB2	low density lipoprotein receptor adaptor protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-151687763-2	chr1	151687663	151687863	+	661.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_022018, intron 5 of 13)	(TG)n|Simple_repeat|Simple_repeat	66964.0	NR_151474	102640772.0		NR_151473	ENSMUSG00000100594	2810414N06Rik	-	RIKEN cDNA 2810414N06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-63780726-4	chr9	63780609	63780809	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22715.0	NM_016769	17127.0	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-45540349-2	chr14	45540249	45540449	+	588.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3361.0	NR_045809	67651.0	Mm.55930	NR_045809	ENSMUSG00000115324	4930527F14Rik	-	RIKEN cDNA 4930527F14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-59840947-4	chr13	59840829	59841029	+	999.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17782.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53158100-4	chr4	53157974	53158174	+	919.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 1 of 49)	intron (NM_013454, intron 1 of 49)	1821.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75178033-2	chr11	75177933	75178133	+	690.916687	f1_balb.idr|f1_c57bl6.idr	exon (NM_027136, exon 2 of 2)	exon (NM_027136, exon 2 of 2)	775.0	NM_027136	246257.0	Mm.41496	NM_027136	ENSMUSG00000038268	Ovca2	9030414M07Rik	candidate tumor suppressor in ovarian cancer 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3860857-3	chr12	3860743	3860943	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045884, intron 3 of 3)	intron (NR_045884, intron 3 of 3)	1401.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84981758-3	chr8	84981685	84981885	+	1000.0	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3037.0	NM_008416	16477.0	Mm.1167	NM_008416	ENSMUSG00000052837	Junb	-	jun B proto-oncogene	protein-coding	3.53928625581629	3.75565013946519	2.86526829227307	2.90015999650337	3.30628797378516	4.60300449955621	2.20765169127495	2.91636154764574	0.370106362388209	0.58939747141104	0.968907675192219
Merged-chr9-123259873-4	chr9	123259830	123260030	+	895.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001002267, exon 1 of 1)	exon (NM_001002267, exon 1 of 1)	859.0	NM_001002267	72309.0	Mm.8569	NM_001002267	ENSMUSG00000054871	Tmem158	2310037P21Rik|Ris1	transmembrane protein 158	protein-coding	0.14308699833733	-0.4029467024331	-0.407034519936116	-0.410185795590388	0.23538489478427	-0.402024723613418	-0.406133248771914	-0.409635437177391	0.2990407923107	0.912511439530963	1
Merged-chr4-125131485-7	chr4	125131420	125131620	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3639.0	NM_153159	230738.0	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31205893-9	chr14	31205723	31205923	+	856.962952	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347583, intron 1 of 13)	intron (NM_001347583, intron 1 of 13)	1003.0	NM_022656	64652.0	Mm.298728	NM_022656	ENSMUSG00000021910	Nisch	1200007D05Rik|3202002H23Rik|AW494485|I-1|edsn	nischarin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-13838014-3	chr6	13837923	13838123	+	864.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001330666, exon 3 of 4)	5' UTR (NM_001330666, exon 3 of 4)	1919.0	NM_001330666	64450.0	Mm.167625	NM_145066	ENSMUSG00000048216	Gpr85	2900026B03Rik	G protein-coupled receptor 85	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70950134-4	chr14	70950051	70950251	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302094, intron 3 of 7)	intron (NM_001302094, intron 3 of 7)	60044.0	NM_001302094	14586.0	Mm.32619	NM_008115	ENSMUSG00000022103	Gfra2	-	glial cell line derived neurotrophic factor family receptor alpha 2	protein-coding	4.65885828389249	4.42229762221796	5.09154806900636	3.93820398911458	5.49361631478453	5.41995856893395	5.77455606239092	5.67467762867813	1.1856717062707	0.000295937714680299	0.00727594405888161
Merged-chr10-78308084-2	chr10	78307984	78308184	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_053014, intron 2 of 9)	intron (NM_053014, intron 2 of 9)	32123.0	NR_106119	102465765.0		NR_106119	ENSMUSG00000098885	Mir7659	Gm27433|mmu-mir-7659	microRNA 7659	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-76845718-4	chr11	76845607	76845807	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007754, intron 1 of 20)	intron (NM_007754, intron 1 of 20)	1301.0	NM_007754	12874.0	Mm.276736	NM_007754	ENSMUSG00000020841	Cpd	AA960140|AW322530|D830034L15Rik	carboxypeptidase D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91441656-4	chr16	91441550	91441750	+	905.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-23454.0	NR_077219	100503120.0	Mm.387130	NR_077219	ENSMUSG00000084866	A930006K02Rik	-	RIKEN cDNA A930006K02 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-57087154-1	chr17	57087054	57087254	+	601.0	f1_balb.idr	intron (NM_009451, intron 1 of 3)	intron (NM_009451, intron 1 of 3)	628.0	NM_009451	22153.0	Mm.7420	NM_009451	ENSMUSG00000062591	Tubb4a	AI325297|M(beta)4|Tubb|Tubb4	tubulin, beta 4A class IVA	protein-coding	-0.934764354340856	-0.918725264263529	-0.230181201566661	-0.757443490521554	-0.934160331252074	-0.91594557163566	-0.927566377553458	-0.930279335768362	-3.0584404995843	0.308387178445416	1
Merged-chr18-54848360-2	chr18	54848260	54848460	+	862.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	141820.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-57562508-2	chr9	57562408	57562608	+	736.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_022813, intron 1 of 8)	intron (NM_022813, intron 1 of 8)	1564.0	NM_022813	24044.0	Mm.286069	NM_022813	ENSMUSG00000040188	Scamp2	AI875466|Sc2	secretory carrier membrane protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-85061146-2	chr2	85061046	85061246	+	603.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081260, intron 5 of 11)	intron (NM_001081260, intron 5 of 11)	10686.0	NM_001081260	228140.0	Mm.23606	NM_001081260	ENSMUSG00000033955	Tnks1bp1	Tab182|mKIAA1741	tankyrase 1 binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-23401812-4	chr13	23401720	23401920	+	924.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	22046.0	NM_013924	30946.0	Mm.292094	NM_013924	ENSMUSG00000036376	Abt1	-	activator of basal transcription 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90492803-2	chr2	90492703	90492903	+	590.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	-13629.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-65315930-4	chr3	65315810	65316010	+	916.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357358, intron 7 of 13)	(TTTTG)n|Simple_repeat|Simple_repeat	-13225.0	NR_126080	102637797.0	Mm.446731	NR_126080	ENSMUSG00000104093	A330015K06Rik	-	RIKEN cDNA A330015K06 gene	ncRNA	2.17969395409539	3.55180260061592	2.2090125346697	2.89083472169222	2.19913917889478	3.57695016497394	2.22727718675704	2.90602630399018	0.0369281243633462	0.962311276368488	0.998431161219273
Merged-chr16-91887970-2	chr16	91887847	91888047	+	678.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_010587, intron 29 of 38)	intron (NM_010587, intron 29 of 38)	43683.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	1.21824481553878	1.01490874259905	0.608072159858694	0.787045033523408	1.67519427666624	1.02373287192439	0.610524133021054	0.79085198006869	0.768700344890619	0.608490507239328	0.974576632476413
Merged-chr16-45029664-3	chr16	45029569	45029769	+	859.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64342.0	NM_026439	67896.0	Mm.181074	NM_026439	ENSMUSG00000022665	Ccdc80	2610001E17Rik|DRO1|Ssg1|Urb	coiled-coil domain containing 80	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-13551339-4	chr14	13551225	13551425	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163032, intron 2 of 4)	intron (NM_001163032, intron 2 of 4)	97367.0	NM_001163032	72003.0	Mm.317515	NM_028052	ENSMUSG00000056296	Synpr	1500003F20Rik|SPO	synaptoporin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-48555743-2	chr6	48555692	48555892	+	939.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177736, intron 1 of 2)	RMER2|LTR|ERV1	993.0	NM_177736	243371.0	Mm.290764	NM_177736	ENSMUSG00000073096	Lrrc61	BC027309	leucine rich repeat containing 61	protein-coding	0.108114623799936	-0.0200217557962632	0.648704911976386	0.604221690158116	0.112362207353461	-0.0187918971753807	-0.0242763281259193	-0.0289596869313724	-3.13972527089715	0.139788303883745	1
Merged-chr7-127184987-4	chr7	127184882	127185082	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11095.0	NM_001285907	70233.0	Mm.28050	NM_027353	ENSMUSG00000042502	Cd2bp2	1500011B02Rik|2410024K20Rik|AW048183	CD2 antigen (cytoplasmic tail) binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56674241-4	chr17	56674138	56674338	+	974.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252467, intron 1 of 13)	URR1B|DNA|hAT-Charlie	1013.0	NM_027933	71810.0	Mm.29608	NM_027933	ENSMUSG00000002372	Ranbp3	2610024N24Rik|AA408221	RAN binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-30216887-1	chr17	30216787	30216987	+	564.0	f0_c57.idr	3' UTR (NM_027060, exon 11 of 11)	3' UTR (NM_027060, exon 11 of 11)	179293.0	NR_030688	623169.0	Mm.440508	NR_030688		Gm6402	EG623169	ribosomal protein S17 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-45015801-3	chr4	45015704	45015904	+	897.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2805.0	NM_022811	64424.0	Mm.282932	NM_022811	ENSMUSG00000028318	Polr1e	53kDa|AU042259|D030019D19Rik|Paf53|Praf1	polymerase (RNA) I polypeptide E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-145110279-2	chr7	145110192	145110392	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	97827.0	NR_033626	100040049.0	Mm.102235	NR_033626	ENSMUSG00000109305	1810010D01Rik	Gm2572	RIKEN cDNA 1810010D01 gene	ncRNA	0.880238016065897	2.40536645271957	2.22227970143997	0.917998231385087	1.30965092989612	1.67954539210185	2.49637531069627	0.921834806425999	-0.143109767078001	0.912075968429231	0.998431161219273
Merged-chr13-94972755-2	chr13	94972655	94972855	+	680.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-3589.0	NM_172590	218460.0	Mm.33856	NM_172590	ENSMUSG00000042015	Wdr41	B830029I03Rik|MSTP048	WD repeat domain 41	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-34080195-4	chr18	34080092	34080292	+	898.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72986.0	NM_013512	13824.0	Mm.3465	NM_013512	ENSMUSG00000024376	Epb41l4a	Epb4.1l4|Epb4.1l4a|NBL4	erythrocyte membrane protein band 4.1 like 4a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-41584697-4	chr10	41584589	41584789	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358562, intron 33 of 47)	MLT1L|LTR|ERVL-MaLR	16673.0	NR_045341	70538.0	Mm.399807	NR_045341	ENSMUSG00000091370	5730435O14Rik	-	RIKEN cDNA 5730435O14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-114254489-8	chr7	114254411	114254611	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033370, intron 1 of 21)	CpG	169.0	NM_033370	70349.0	Mm.277024	NM_033370	ENSMUSG00000030754	Copb1	2610019B04Rik	coatomer protein complex, subunit beta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-99254024-4	chr5	99253905	99254105	+	966.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1078.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166031229-4	chr2	166031128	166031328	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008679, intron 1 of 22)	intron (NM_008679, intron 1 of 22)	38591.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-76528539-2	chr12	76528439	76528639	+	636.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2B1|LTR|ERVL	4673.0	NR_039597	100628604.0		NR_039597	ENSMUSG00000092738	Mir5135	mir-5135|mmu-mir-5135|mu-mir-5135	microRNA 5135	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36068784-2	chr1	36068684	36068884	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_015818, exon 1 of 2)	exon (NM_015818, exon 1 of 2)	384.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-102435231-2	chr10	102435131	102435331	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4B|LINE|L1	55187.0	NM_024435	67405.0	Mm.64201	NM_024435	ENSMUSG00000019890	Nts	5033428E16Rik|NMN-125|NN|NT|NT/N|NTS1	neurotensin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-74459193-1	chr7	74459093	74459293	+	579.0	f1_c57bl6.idr	intron (NM_001038643, intron 2 of 10)	intron (NM_001038643, intron 2 of 10)	95587.0	NM_023908	108116.0	Mm.425467	NM_023908	ENSMUSG00000025790	Slco3a1	5830414C08Rik|Anr1|MJAM|OATP-D|R75096|Slc21a11	solute carrier organic anion transporter family, member 3a1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-29263770-4	chr6	29263682	29263882	+	979.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8706.0	NM_001190461	69573.0	Mm.45161	NM_023516	ENSMUSG00000043421	Hilpda	2310016C08Rik|AW049004|Hig2	hypoxia inducible lipid droplet associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-6204889-3	chr1	6204774	6204974	+	854.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MERVL_2A-int|LTR|ERVL	-9788.0	NM_009826	12421.0	Mm.293811	NM_009826	ENSMUSG00000025907	Rb1cc1	2900055E04Rik|5930404L04Rik|Cc1|FIP200|LaXp180	RB1-inducible coiled-coil 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-55529710-3	chr1	55529624	55529824	+	864.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114663, intron 1 of 5)	intron (NM_001114663, intron 1 of 5)	123778.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78601448-2	chr15	78601357	78601557	+	713.56665	f1_balb.idr|f1_c57bl6.idr	intron (NM_028195, intron 1 of 12)	intron (NM_028195, intron 1 of 12)	4410.0	NM_028195	72318.0	Mm.32911	NM_028195	ENSMUSG00000018008	Cyth4	2510004M07Rik|5830469K17Rik|AI467541|Pscd4|mFLJ00017	cytohesin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72598495-4	chr6	72598400	72598600	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026159)	promoter-TSS (NM_026159)	-87.0	NM_001253692	232089.0	Mm.167232	NM_144917	ENSMUSG00000056698	Elmod3	AI844780|C330008I15Rik|RBM29|Rbed1	ELMO/CED-12 domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-172162207-2	chr1	172162107	172162307	+	726.333374	f1_balb.idr|f1_c57bl6.idr	intron (NR_151641, intron 2 of 13)	B3|SINE|B2	14192.0	NM_001357204	98193.0	Mm.159915	NM_153555	ENSMUSG00000026554	Dcaf8	AA408877|AA433120|AA792214|AU018973|C76055|D1Dau35e|D1Ucla4|H326|Wdr42a	DDB1 and CUL4 associated factor 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-10823039-4	chr18	10822949	10823149	+	928.241699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37497.0	NR_029781	723959.0		NR_029781	ENSMUSG00000106348	Mir1a-2	Mir1-2|Mirn1-2|mir-1a-2|mmu-mir-1-2|mmu-mir-1a-2	microRNA 1a-2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-93861488-4	chr13	93861396	93861596	+	942.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009712, intron 4 of 7)	intron (NM_009712, intron 4 of 7)	70719.0	NR_049198	100885837.0		NR_049198	ENSMUSG00000093480	Mir5624	Gm25075|mir-5624|mmu-mir-5624	microRNA 5624	ncRNA	1.93702304050344	1.07498675527775	2.36441843345039	1.72604789172175	2.18850953265728	1.07966905812165	1.2928776975746	1.5992873779739	-0.674533624068892	0.569825282906124	0.962718661854691
Merged-chr11-53430433-4	chr11	53430354	53430554	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025352, intron 1 of 1)	intron (NM_025352, intron 1 of 1)	377.0	NM_025352	22272.0	Mm.251621	NM_025352	ENSMUSG00000044894	Uqcrq	1100001F06Rik|1500040F11Rik|5830407L17Rik|9.5kDa|AA959903|QP-C|Qpc|Uqcrb|c1502	ubiquinol-cytochrome c reductase, complex III subunit VII	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-10213442-1	chr3	10213342	10213542	+	896.0	f0_balb.idr	Intergenic	Intergenic	-4826.0	NM_024406	11770.0	Mm.582	NM_024406	ENSMUSG00000062515	Fabp4	422/aP2|AFABP|ALBP|ALBP/Ap2|Ap2|Lbpl|P15	fatty acid binding protein 4, adipocyte	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116103718-4	chr11	116103629	116103829	+	861.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6506.0	NM_001205081	217333.0	Mm.347770	NM_172570	ENSMUSG00000020773	Trim47	2210023F24Rik	tripartite motif-containing 47	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-63142506-2	chr14	63142406	63142606	+	817.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007798, exon 10 of 10)	3' UTR (NM_007798, exon 10 of 10)	20044.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	-1.20406370813143	-1.56956373024278	-1.57884638916872	-1.58647144159385	-1.598104728449	-1.56755213932999	-1.57674499865798	-1.58510656085539	-1.70745470802464	0.626337835847419	1
Merged-chr15-103239502-4	chr15	103239413	103239613	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_002885)	promoter-TSS (NR_002885)	339.0	NM_001358950	12419.0	Mm.262059	NM_007626	ENSMUSG00000009575	Cbx5	2610029O15Rik|C75991|HP1|Hp1a|Hp1alpha	chromobox 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-151596850-2	chr1	151596750	151596950	+	717.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_022018, intron 1 of 13)	intron (NM_022018, intron 1 of 13)	25477.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-75279334-2	chr4	75279234	75279434	+	550.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1042.0	NM_025849	66928.0	Mm.24332	NM_025849	ENSMUSG00000028398	Dmac1	1700027K24Rik|3110001D03Rik|Tmem261	distal membrane arm assembly complex 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-98776891-2	chr12	98776791	98776991	+	669.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001008506, intron 10 of 14)	intron (NM_001008506, intron 10 of 14)	5869.0	NM_001160108	75553.0	Mm.25549	NM_029334	ENSMUSG00000021012	Zc3h14	1010001P15Rik|1700016A15Rik|2700069A02Rik|AU014748	zinc finger CCCH type containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-79539916-4	chr3	79539851	79540051	+	938.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162999, intron 1 of 16)	intron (NM_001162999, intron 1 of 16)	27728.0	NM_001162999	329679.0	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-142989705-3	chr6	142989614	142989814	+	898.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25262.0	NM_011374	20449.0	Mm.260838	NM_011374	ENSMUSG00000030283	St8sia1	9330109E03Rik|GD3S|Sia-T|Siat8|Siat8a	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167489255-2	chr2	167489155	167489355	+	657.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356523, intron 1 of 3)	MT2B2|LTR|ERVL	-3390.0	NM_030743	81018.0	Mm.22225	NM_030743	ENSMUSG00000006418	Rnf114	1110008J21Rik|AI225886|AW549494|Zfp228|Zfp313|Znf228	ring finger protein 114	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153048333-3	chr2	153048239	153048439	+	748.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001011732, intron 1 of 2)	L2b|LINE|L2	16487.0	NM_001011732	228787.0	Mm.376111	NM_001011732	ENSMUSG00000042631	Xkr7	AY534253	X-linked Kx blood group related 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-54937011-3	chr14	54936905	54937105	+	635.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029390, intron 1 of 3)	intron (NM_029390, intron 1 of 3)	508.0	NM_029390	67272.0	Mm.41614	NM_026066	ENSMUSG00000040759	Cmtm5	1500005P16Rik|2900052H21Rik|Cklfsf5	CKLF-like MARVEL transmembrane domain containing 5	protein-coding	2.1193037197935	1.8090328136526	1.86453033110039	1.04838767286988	1.72995103387297	1.68099084740439	1.28842118735435	1.4301322962796	-0.736205706217018	0.517103955304409	0.947641799425091
Merged-chr2-52869813-2	chr2	52869713	52869913	+	674.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	11945.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5572652-2	chr17	5572552	5572752	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	80052.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-11455014-2	chr4	11454914	11455114	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-30944.0	NM_001081183	66185.0	Mm.331487	NM_001081183	ENSMUSG00000040720	Virma	1110037F02Rik|4930422M05Rik|Kiaa1429|mKIAA1429	vir like m6A methyltransferase associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-16182397-2	chr3	16182297	16182497	+	714.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145919)	promoter-TSS (NM_001145919)	-768.0	NM_001358043	229096.0	Mm.23834	NM_172677	ENSMUSG00000047213	Ythdf3	9130022A11Rik	YTH domain family 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80436068-2	chr10	80435968	80436168	+	690.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2415.0	NM_001164148	21423.0	Mm.3406	NM_011548	ENSMUSG00000020167	Tcf3	A1|AA408400|ALF2|AW209082|E12|E12/E47|E2A|E47|KA1|ME2|Pan1|Pan2|TCF-3|Tcfe2a|VDIR|bHLHb21	transcription factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4112346-4	chr19	4112229	4112429	+	960.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_075078, exon 22 of 24)	non-coding (NR_075078, exon 22 of 24)	9246.0	NM_001276284	11632.0	Mm.10433	NM_016666	ENSMUSG00000024847	Aip	AA408703|AW476050|Ara9|D19Bwg1412e|Fkbp16|Xap2	aryl-hydrocarbon receptor-interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-5053139-2	chr7	5053039	5053239	+	850.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_026900, exon 2 of 2)	exon (NM_026900, exon 2 of 2)	1607.0	NM_026900	68992.0	Mm.41484	NM_026900	ENSMUSG00000055633	Zfp580	1500015O20Rik|AI838225|Znf580	zinc finger protein 580	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-76505961-3	chr14	76505871	76506071	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310647, intron 2 of 2)	intron (NM_001310647, intron 2 of 2)	1461.0	NM_009366	21807.0	Mm.153272	NM_009366	ENSMUSG00000022010	Tsc22d1	AA589566|AW105905|Egr5|TSC-22|Tgfb1i4|Tsc|Tsc22	TSC22 domain family, member 1	protein-coding	1.52768267303096	1.49401267467568	3.11143650517017	1.95851961190528	1.54153195479196	1.50536301489083	3.13640801894637	1.96976560189997	0.0388534521151171	0.969498246031981	0.998431161219273
Merged-chr8-115487949-2	chr8	115487849	115488049	+	955.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	218945.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101904962-3	chr7	101904806	101905006	+	849.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025605)	promoter-TSS (NM_025605)	-931.0	NM_025605	66508.0	Mm.30003	NM_025605	ENSMUSG00000030842	Lamtor1	2400001E08Rik|Pdro|p18	late endosomal/lysosomal adaptor, MAPK and MTOR activator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-58770327-4	chr1	58770236	58770436	+	956.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25038.0	NM_009812	12370.0	Mm.336851	NM_009812	ENSMUSG00000026029	Casp8	CASP-8|FLICE|MACH|Mch5	caspase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-82782497-2	chr18	82782397	82782597	+	880.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23458.0	NR_045389	76961.0	Mm.396392	NR_045389	ENSMUSG00000101773	2210420H20Rik	-	RIKEN cDNA 2210420H20 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90749850-4	chr2	90749765	90749965	+	970.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018828, intron 2 of 16)	ORR1B1|LTR|ERVL-MaLR	4495.0	NM_018828	55935.0	Mm.489638	NM_018828	ENSMUSG00000008200	Fnbp4	FBP30|Fnbp30|mKIAA1014	formin binding protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-60246714-4	chr10	60246600	60246800	+	892.2708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27440.0	NM_016803	53374.0	Mm.12866	NM_016803	ENSMUSG00000057337	Chst3	C6ST|C6ST-1|GST-0	carbohydrate (chondroitin 6/keratan) sulfotransferase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-22439812-4	chr16	22439712	22439912	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023794)	promoter-TSS (NM_023794)	-242.0	NM_023794	104156.0	Mm.155708	NM_023794	ENSMUSG00000013089	Etv5	1110005E01Rik|8430401F14Rik|ERM	ets variant 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-22060619-4	chr8	22060522	22060722	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001243161)	promoter-TSS (NM_001243161)	-99.0	NR_040650	207958.0	Mm.267439	NM_183142	ENSMUSG00000063362	Alg11	AI849156|AW492253|B230397C21|Mmat-4(5)	asparagine-linked glycosylation 11 (alpha-1,2-mannosyltransferase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-172346269-3	chr1	172346092	172346292	+	844.142883	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039484, intron 1 of 1)	intron (NM_001039484, intron 1 of 1)	4982.0	NM_001039484	16513.0	Mm.254563	NM_020269	ENSMUSG00000044708	Kcnj10	BIR10|BIRK-1|Kir1.2|Kir4.1	potassium inwardly-rectifying channel, subfamily J, member 10	protein-coding	0.619815243400466	0.656260501442557	1.29111585431155	0.826358054857063	0.622134967278372	1.2253903172173	1.30387332494235	1.62665674635153	1.62255284994508	0.294758902952649	0.798191705447
Merged-chr10-68140988-4	chr10	68140883	68141083	+	792.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023598, intron 4 of 9)	intron (NM_023598, intron 4 of 9)	137743.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166907126-4	chr2	166907030	166907230	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023565, intron 1 of 24)	intron (NM_023565, intron 1 of 24)	1034.0	NM_023565	110750.0	Mm.22417	NM_023565	ENSMUSG00000002718	Cse1l	2610100P18Rik|AA407533|Capts|Cas|Xpo2	chromosome segregation 1-like (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-38534667-2	chr2	38534567	38534767	+	818.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159631, intron 1 of 9)	B4A|SINE|B4	22791.0	NM_001159631	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-6314213-3	chr17	6314110	6314310	+	745.75	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166629, intron 2 of 4)	B2_Mm1t|SINE|B2	3264.0	NM_001166629	100310872.0	Mm.381893	NM_001166629	ENSMUSG00000092074	Dynlt1a	-	dynein light chain Tctex-type 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-42692279-4	chr6	42692182	42692382	+	993.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355769, intron 1 of 8)	intron (NM_001355769, intron 1 of 8)	818.0	NM_029930	77574.0	Mm.24652	NM_029930	ENSMUSG00000036667	Tcaf1	2810407D09Rik|3321401G04Rik|A230020K05Rik|AI848529|Fam115a	TRPM8 channel-associated factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-79519537-2	chr11	79519437	79519637	+	725.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077496, intron 1 of 1)	intron (NM_001077496, intron 1 of 1)	4225.0	NM_001077496	216984.0	Mm.439665	NM_001077496	ENSMUSG00000093938	Evi2b	Evi-2|Evi2	ecotropic viral integration site 2b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83224391-4	chr11	83224281	83224481	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015519, intron 2 of 3)	intron (NR_015519, intron 2 of 3)	805.0	NR_015519	100043636.0	Mm.295569	NR_015519	ENSMUSG00000087107	AI662270	AW496474	expressed sequence AI662270	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-10952443-2	chr16	10952343	10952543	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37646.0	NR_131135	545180.0	Mm.373756	NR_131135	ENSMUSG00000095369	Gm21859	-	predicted gene, 21859	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166301412-3	chr2	166301312	166301512	+	906.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27504.0	NR_033467	670775.0	Mm.384326	NR_033467	ENSMUSG00000084840	Gm11468	-	predicted gene 11468	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-52381278-2	chr10	52381178	52381378	+	649.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_053187, intron 1 of 7)	intron (NM_053187, intron 1 of 7)	846.0	NM_053187	94221.0	Mm.390258	NM_053187	ENSMUSG00000019861	Gopc	2210402P09Rik|AI844555|CAL|FIG|GOPC1|PIST	golgi associated PDZ and coiled-coil motif containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-21029838-4	chr2	21029734	21029934	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60960.0	NR_033225	433408.0	Mm.386941	NR_033225		Gm13375	-	predicted gene 13375	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-60699705-4	chr11	60699606	60699806	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159405)	promoter-TSS (NM_001159405)	16.0	NM_008502	16897.0	Mm.285453	NM_008502	ENSMUSG00000020536	Llgl1	AI325176|Lgl1|Llglh|Mgl1	LLGL1 scribble cell polarity complex component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-8996301-5	chr5	8996191	8996391	+	673.366638	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023733, intron 2 of 17)	intron (NM_023733, intron 2 of 17)	855.0	NM_023733	74114.0	Mm.28197	NM_023733	ENSMUSG00000003623	Crot	1200003H03Rik	carnitine O-octanoyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-136020819-4	chr4	136020706	136020906	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013736, intron 1 of 10)	intron (NM_013736, intron 1 of 10)	843.0	NM_013736	27224.0	Mm.27663	NM_013736	ENSMUSG00000028668	Eloa	110kDa|AA408125|Tceb3|Tceb3a	elongin A	protein-coding	2.32928040131792	1.02381125094933	1.43446921436659	1.55188462239181	1.61045137737966	1.28639369785356	2.35765948310467	1.21473537160802	0.0585262441719973	0.960218239982351	0.998431161219273
Merged-chr2-132212414-3	chr2	132212289	132212489	+	901.4523929999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35399.0	NM_027478	70612.0	Mm.30116	NM_027478	ENSMUSG00000027341	Tmem230	5730494N06Rik|AA407821	transmembrane protein 230	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-131491906-4	chr2	131491814	131492014	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177836)	promoter-TSS (NM_001177836)	52.0	NM_001177838	228608.0	Mm.136586	NM_145533	ENSMUSG00000027333	Smox	B130066H01Rik|PAO|PAOh1|SMO	spermine oxidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-31905955-4	chr17	31905868	31906068	+	983.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50164.0	NM_010831	17691.0	Mm.290941	NM_010831	ENSMUSG00000024042	Sik1	Hrt-20|Msk|Sik|Sik-1|Snf1lk	salt inducible kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35380340-4	chr17	35380323	35380523	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001143689, exon 3 of 6)	exon (NM_001143689, exon 3 of 6)	806.0	NM_001143689	15015.0	Mm.464284	NM_001143689	ENSMUSG00000035929	H2-Q4	H-2Q4|H2-Gs10|Qa-4|Qa4|Qat-4|Qb-1|Qb1	histocompatibility 2, Q region locus 4	protein-coding	1.03771875470685	1.72292791794662	1.99421095323298	0.924638367098701	0.887572163510375	0.745524894301343	1.14353754606372	0.929132790081295	-2.32909978275146	0.0868290052332361	0.452746287021785
Merged-chr2-28793126-3	chr2	28793040	28793240	+	896.7333369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033874, intron 11 of 12)	RLTR34C_MM|LTR|ERVK	47220.0	NM_172977	269252.0	Mm.26043	NM_172977	ENSMUSG00000035666	Gtf3c4	5330400C03|AI426938|AU014771|AU017413|KAT12|TFIIIC90	general transcription factor IIIC, polypeptide 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-84788490-4	chr2	84788375	84788575	+	957.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10353.0	NM_019949	56791.0	Mm.38261	NM_019949	ENSMUSG00000027078	Ube2l6	2810489I21Rik|RIG-B|UBCH8|Ubce8|Ubcm8	ubiquitin-conjugating enzyme E2L 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-95390393-3	chr13	95390278	95390478	+	702.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15021.0	NM_025630	66549.0	Mm.36785	NM_025630	ENSMUSG00000021681	Aggf1	2010009L17Rik|2310029P06Rik|AW112072|Peg3|VG5Q	angiogenic factor with G patch and FHA domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-74606290-1	chr2	74606190	74606390	+	854.0	f0_balb.idr	Intergenic	MLTR11B|LTR|ERVK	-27342.0	NM_027133	69605.0	Mm.156113	NM_027133	ENSMUSG00000009207	Lnpk	2310011O18Rik|4921514L11Rik|9530051D01Rik|AI666268|Lnp|Lnpk1|Ul|ulnaless	lunapark, ER junction formation factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120436911-4	chr8	120436826	120437026	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51940.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-64201832-4	chr17	64201727	64201927	+	906.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	130056.0	NM_144859	224938.0	Mm.489681	NM_144859	ENSMUSG00000024083	Pja2	AI447901|AL022700|Neurodap1|mKIAA0438	praja ring finger ubiquitin ligase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-54998453-4	chr11	54998324	54998524	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_138556, intron 13 of 24)	intron (NR_138556, intron 13 of 24)	35047.0	NR_138556	11749.0	Mm.265347	NM_013472	ENSMUSG00000018340	Anxa6	AW107198|Anx6|AnxVI|Cabm|Camb	annexin A6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-8856628-4	chr17	8856526	8856726	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347321, intron 1 of 21)	intron (NM_001347321, intron 1 of 21)	6641.0	NM_001347321	23984.0	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	3.52034318905775	2.92470964487022	2.60057382906062	3.22201357203304	1.998245122833	1.81322764756077	1.75230398481552	3.02239180914286	-1.6054515533356	0.0440222801779788	0.301357541408553
Merged-chr7-99089531-2	chr7	99089431	99089631	+	642.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 4 of 14)	intron (NM_178635, intron 4 of 14)	51613.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-55398097-1	chr1	55397997	55398197	+	583.0	f0_balb.idr	Intergenic	MTD|LTR|ERVL-MaLR	-7849.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-122606388-2	chr6	122606288	122606488	+	562.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008108, exon 2 of 2)	exon (NM_008108, exon 2 of 2)	3699.0	NM_008108	14562.0	Mm.299742	NM_008108	ENSMUSG00000030117	Gdf3	C78318|Gdf-3|Vgr-2|Vgr2|ecat9	growth differentiation factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-21937923-2	chr3	21937823	21938023	+	576.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-138729.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-78435426-2	chr10	78435326	78435526	+	704.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_105837)	TTS (NR_105837)	627.0	NR_105837	102465221.0		NR_105837	ENSMUSG00000098932	Mir6410	Gm27916|mmu-mir-6410	microRNA 6410	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-180432391-2	chr2	180432291	180432491	+	743.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23854.0	NM_001355218	108115.0	Mm.133687	NM_148933	ENSMUSG00000038963	Slco4a1	OATP-E|Slc21a12	solute carrier organic anion transporter family, member 4a1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97447193-4	chr6	97447083	97447283	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	12103.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132144558-2	chr4	132144458	132144658	+	773.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013622)	promoter-TSS (NM_013622)	-72.0	NM_013622	18386.0	Mm.5243	NM_013622	ENSMUSG00000050511	Oprd1	DOR|DOR-1|Nbor|mDOR	opioid receptor, delta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-46313317-4	chr18	46313228	46313428	+	968.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1400.0	NM_001160399	240261.0	Mm.329416	NM_001160399	ENSMUSG00000071855	Ccdc112	8430438M01Rik|AW108467	coiled-coil domain containing 112	protein-coding	2.28787058745349	3.10300041864511	2.13143172264098	2.80673782865718	3.49245944189587	3.12595135161574	3.71002411497194	3.19803161029719	1.34845784313764	0.0393004336047461	0.282027223411168
Merged-chr10-70045920-2	chr10	70045820	70046020	+	861.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51201.0	NM_001111121	76551.0	Mm.281741	NM_001111121	ENSMUSG00000048701	Ccdc6	2810012H18Rik|AA536681|AA960498|AW061011	coiled-coil domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-48930492-4	chr2	48930390	48930590	+	655.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149356, intron 6 of 13)	intron (NR_149356, intron 6 of 13)	18777.0	NM_001177313	26428.0	Mm.291059	NM_011958	ENSMUSG00000026761	Orc4	Orc4P|Orc4l|mMmORC4	origin recognition complex, subunit 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70038627-2	chr11	70038527	70038727	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007864, intron 8 of 19)	intron (NM_007864, intron 8 of 19)	-15497.0	NM_001291131	11889.0	Mm.6559	NM_009714	ENSMUSG00000020884	Asgr1	ASGPR1|Asgr|Asgr-1|HL-1	asialoglycoprotein receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-10351424-4	chr3	10351308	10351508	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001331015)	promoter-TSS (NM_001331015)	-91.0	NM_001331014	66361.0	Mm.371617	NM_025512	ENSMUSG00000039795	Zfand1	2310008M20Rik|AW048890	zinc finger, AN1-type domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-113987005-2	chr5	113986905	113987105	+	554.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198109, intron 2 of 14)	intron (NM_198109, intron 2 of 14)	6752.0	NM_198109	231637.0	Mm.389682	NM_198109	ENSMUSG00000042121	Ssh1	AW551225|Gm1394|Gm1395|SSH-1|SSH-1L	slingshot protein phosphatase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53862109-1	chr4	53862009	53862209	+	546.0	f0_balb.idr	TTS (NM_028053)	TTS (NM_028053)	36064.0	NM_028053	52076.0	Mm.27184	NM_028053	ENSMUSG00000028420	Tmem38b	1600017F22Rik|AA437809|AV051057|D4Ertd89e|TRIC-B|mg33b	transmembrane protein 38B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-59239587-2	chr2	59239487	59239687	+	553.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 2 of 20)	intron (NM_175464, intron 2 of 20)	78737.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59599058-4	chr15	59598959	59599159	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026746, intron 6 of 6)	intron (NM_026746, intron 6 of 6)	-49595.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	2.26115313077991	1.93988009659971	2.10720977271562	1.68717982269331	2.28062812429615	1.43145922010368	1.15910080592055	1.54070410201105	-0.901250327330762	0.399994371489334	0.885176145862419
Merged-chr8-46791979-5	chr8	46791876	46792076	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152560, intron 1 of 7)	intron (NR_152560, intron 1 of 7)	52231.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-23432945-4	chr5	23432844	23433044	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040469, exon 1 of 1)	non-coding (NR_040469, exon 1 of 1)	1409.0	NR_040469	269630.0	Mm.425231	NR_040469	ENSMUSG00000073147	5031425E22Rik	-	RIKEN cDNA 5031425E22 gene	ncRNA	3.00746951520432	2.65221403262805	3.34824356954773	3.40786339807073	2.74579326806647	4.07989571934827	2.72971289617897	3.27182510155537	0.309778442605883	0.63059235235802	0.981465575333797
Merged-chr4-6369938-4	chr4	6369836	6370036	+	963.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001098227, intron 1 of 8)	intron (NM_001098227, intron 1 of 8)	4256.0	NM_001098227	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-110804991-2	chr7	110804891	110805091	+	545.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009667, intron 11 of 14)	intron (NM_009667, intron 11 of 14)	32387.0	NM_009667	11717.0	Mm.3238	NM_009667	ENSMUSG00000005686	Ampd3	-	adenosine monophosphate deaminase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115559878-4	chr5	115559728	115559928	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_007475, exon 2 of 7)	5' UTR (NM_007475, exon 2 of 7)	361.0	NM_007475	11837.0	Mm.5286	NM_007475	ENSMUSG00000067274	Rplp0	36B4|Arbp|L10E	ribosomal protein, large, P0	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-60219208-3	chr3	60219116	60219316	+	805.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	137347.0	NM_032400	84112.0	Mm.125110	NM_032400	ENSMUSG00000027762	Sucnr1	Gpr91	succinate receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-78923129-4	chr2	78923033	78923233	+	910.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151457, intron 6 of 6)	intron (NR_151457, intron 6 of 6)	53455.0	NR_151457	22193.0	Mm.1485	NM_009454	ENSMUSG00000027011	Ube2e3	Ubce4|ubcM2	ubiquitin-conjugating enzyme E2E 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-39195825-1	chr16	39195725	39195925	+	598.0	f1_c57bl6.idr	Intergenic	ERVL-E-int|LTR|ERVL	-6875.0	NR_153800	102640746.0		NR_153800		Gm36742	-	predicted gene, 36742	ncRNA	-0.429165910719733	-0.873612895455471	-0.880042310359133	-0.882147047040279	-0.515285789036623	-0.870994549976101	-0.879439369138014	-0.881779851595733	-0.36230783815378	0.907723332250447	1
Merged-chr1-121135856-4	chr1	121135740	121135940	+	896.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	48435.0	NR_110450	98452.0	Mm.131017	NR_038008	ENSMUSG00000097881	Celrr	AI848258|B230209K01Rik|Celr|Gm818	cerebellum expressed regulatory RNA	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-104540611-2	chr8	104540511	104540711	+	543.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001301165)	promoter-TSS (NM_001301165)	-196.0	NM_053070	12354.0	Mm.129265	NM_053070	ENSMUSG00000031883	Car7	AV343731|Ca7	carbonic anhydrase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41334714-4	chr19	41334599	41334799	+	965.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 2 of 16)	intron (NM_031376, intron 2 of 16)	50371.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-126153063-4	chr4	126152969	126153169	+	993.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025856, intron 6 of 11)	intron (NM_025856, intron 6 of 11)	5066.0	NM_172145	230752.0	Mm.41569	NM_172145	ENSMUSG00000050212	Eva1b	2610027C15Rik|Fam176b	eva-1 homolog B (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-64832817-2	chr10	64832717	64832917	+	595.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164376, intron 13 of 17)	ORR1A2|LTR|ERVL-MaLR	287550.0	NR_152621	102632700.0		NR_152621	ENSMUSG00000100528	Gm28881	-	predicted gene 28881	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-77737730-6	chr9	77737768	77737968	+	984.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	-16667.0	NR_151778	14629.0	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	4.53694048764526	3.85517668729508	3.64816600377248	3.83214029885254	3.66984702835164	4.33848062512096	3.59183605074894	2.66195884755725	-0.474051247692818	0.377393268558763	0.8703669632789
Merged-chr1-74386329-2	chr1	74386229	74386429	+	923.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_013612)	TTS (NM_013612)	-5280.0	NM_153088	227292.0	Mm.165042	NM_153088	ENSMUSG00000026176	Ctdsp1	GIP|NLIIF|Nif3|SCP1	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-47349333-1	chr14	47349233	47349433	+	708.0	f1_balb.idr	Intergenic	B3|SINE|B2	-24527.0	NM_010705	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	0.0822485441356977	0.109688825278637	0.100845526553241	0.0939275387932124	0.415362792756223	1.26198225636961	0.783537254800808	0.0951422647527904	4.43079095849753	0.0263908337528356	1
Merged-chr11-62810585-4	chr11	62810480	62810680	+	978.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9673.0	NM_053169	94092.0	Mm.117087	NM_053169	ENSMUSG00000047821	Trim16	9130006M08Rik|AI482483|EBBP	tripartite motif-containing 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-66149860-2	chr14	66149760	66149960	+	714.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_144803, intron 6 of 6)	intron (NM_144803, intron 6 of 6)	8900.0	NM_144803	110902.0	Mm.57350	NM_144803	ENSMUSG00000022041	Chrna2	Acra-2|Acra2|BC011490	cholinergic receptor, nicotinic, alpha polypeptide 2 (neuronal)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36741389-2	chr18	36741244	36741444	+	727.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_010885)	TTS (NM_010885)	3243.0	NM_010885	17991.0	Mm.29867	NM_010885	ENSMUSG00000014294	Ndufa2	AV000592|B8|C1-B8|CI-B8	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 2	protein-coding	-0.202500471717358	-0.655583835598239	-0.658889288426782	-0.661433489785496	-0.665019621783252	-0.654837534854276	-0.658161001983565	-0.130974292714595	0.263984665833299	0.928154930818539	1
Merged-chr1-23382199-3	chr1	23382078	23382278	+	854.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081079, intron 1 of 6)	intron (NM_001081079, intron 1 of 6)	997.0	NM_001081079	70155.0	Mm.28013	NM_001081079	ENSMUSG00000026158	Ogfrl1	2210417C17Rik	opioid growth factor receptor-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5494085-2	chr19	5493985	5494185	+	803.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_007687)	TTS (NM_007687)	3630.0	NM_007687	12631.0	Mm.329655	NM_007687	ENSMUSG00000056201	Cfl1	AA959946|Cof	cofilin 1, non-muscle	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-79794349-4	chr3	79794227	79794427	+	682.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	48335.0	NM_027495	70652.0	Mm.46635	NM_027495	ENSMUSG00000027956	Tmem144	1110057I03Rik|5730537D05Rik	transmembrane protein 144	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123372341-3	chr5	123372243	123372443	+	894.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_029850, exon 6 of 6)	3' UTR (NM_029850, exon 6 of 6)	-22455.0	NM_133917	208104.0	Mm.83277	NM_133917	ENSMUSG00000038342	Mlxip	AW228700|Mir|bHLHe36	MLX interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-30545364-4	chr13	30545271	30545471	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025710)	promoter-TSS (NM_025710)	-55.0	NM_025710	66694.0	Mm.181933	NM_025710	ENSMUSG00000038462	Uqcrfs1	4430402G14Rik|AI875505	ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129035276-4	chr4	129035185	129035385	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	-22986.0	NM_029219	75234.0	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-156559906-2	chr1	156559806	156560006	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001136104, intron 1 of 12)	intron (NM_001136104, intron 1 of 12)	1119.0	NM_001136104	11352.0	Mm.329515	NM_009595	ENSMUSG00000026596	Abl2	AA536808|Abll|Arg	v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-72243953-4	chr1	72243907	72244107	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_155355)	promoter-TSS (NR_155355)	14.0	NR_155355	320933.0	Mm.440953	NR_155355		D230017M19Rik	B930094L07Rik	RIKEN cDNA D230017M19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-103632665-4	chr8	103632565	103632765	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045730, intron 1 of 4)	intron (NR_045730, intron 1 of 4)	28866.0	NR_045730	71058.0	Mm.67707	NR_045730	ENSMUSG00000110336	4933400L20Rik	-	RIKEN cDNA 4933400L20 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-94804739-4	chr8	94804621	94804821	+	897.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5732.0	NM_011332	20295.0	Mm.41988	NM_011332	ENSMUSG00000031780	Ccl17	Abcd-2|Scya17|Scya17l|Tarc	chemokine (C-C motif) ligand 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-73971538-4	chr17	73971451	73971651	+	984.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21355.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-22140944-2	chr8	22140811	22141011	+	789.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011848, intron 11 of 15)	RLTR44A|LTR|ERVK	-15844.0	NM_001347318	330721.0	Mm.113940	NM_177898	ENSMUSG00000037738	Nek5	6530411J22|BB049667	NIMA (never in mitosis gene a)-related expressed kinase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-43077773-4	chr17	43077659	43077859	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178589, intron 4 of 5)	intron (NM_178589, intron 4 of 5)	61204.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-125461770-4	chr8	125461674	125461874	+	989.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357372, intron 10 of 21)	intron (NM_001357372, intron 10 of 21)	31059.0	NM_001081337	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	5.22848615469769	5.15766171578672	4.85071710605324	4.45623475749658	4.53835522231828	4.03520590254643	4.45111239174421	5.45795126329048	-0.267496336107817	0.498937812688233	0.937388734723802
Merged-chr2-170328750-4	chr2	170328673	170328873	+	925.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27588.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-79843304-2	chr12	79843204	79843404	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	81429.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-101846255-2	chr5	101846155	101846355	+	789.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 63 of 66)	intron (NM_172882, intron 63 of 66)	81125.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	-2.18138529563533	-2.15523716995652	-2.1631445789866	-2.16963996020037	-2.05513010215571	-2.15352360143315	-2.16135451490766	-2.16847729006863	0.759018020146679	0.829933115115583	1
Merged-chr2-84592483-2	chr2	84592315	84592515	+	633.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57065.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	0.467456400817171	0.502125112214438	1.02050894796773	0.482222615608345	0.923665605510143	1.33986020339627	1.47368927024764	0.483757396080322	2.37929336202969	0.167836438808531	0.633938930825383
Merged-chr14-64202043-2	chr14	64201943	64202143	+	667.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253715, intron 4 of 4)	intron (NM_001253715, intron 4 of 4)	97720.0	NM_028525	73382.0	Mm.481055	NM_028525	ENSMUSG00000021966	Prss52	1700049K14Rik|Tesp3	protease, serine 52	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-104039743-1	chr5	104039643	104039843	+	595.0	f0_balb.idr	Intergenic	B3|SINE|B2	-7121.0	NM_028794	74167.0	Mm.241484	NM_028794	ENSMUSG00000029310	Nudt9	1190002C07Rik|ADPR-PPase|AI462474	nudix (nucleoside diphosphate linked moiety X)-type motif 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-50695728-4	chr15	50695622	50695822	+	939.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310481, intron 4 of 5)	intron (NM_001310481, intron 4 of 5)	193327.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-95008393-3	chr4	95008297	95008497	+	713.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29297.0	NM_177239	320713.0	Mm.208868	NM_177239	ENSMUSG00000062627	Mysm1	C130067A03Rik|C530050H10Rik	myb-like, SWIRM and MPN domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-58930177-3	chr6	58930074	58930274	+	864.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23048.0	NM_021432	58243.0	Mm.389747	NM_021432	ENSMUSG00000055430	Nap1l5	1110020M21Rik	nucleosome assembly protein 1-like 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46830773-2	chr8	46830673	46830873	+	911.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008391, intron 6 of 8)	intron (NM_008391, intron 6 of 8)	91028.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153071936-2	chr2	153071836	153072036	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_145536, exon 5 of 9)	exon (NM_145536, exon 5 of 9)	5981.0	NM_145536	228788.0	Mm.299979	NM_145536	ENSMUSG00000027474	Ccm2l	-	cerebral cavernous malformation 2-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-97964687-4	chr15	97964554	97964754	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201359, intron 1 of 7)	intron (NM_201359, intron 1 of 7)	425.0	NM_001252153	380967.0	Mm.196630	NM_201359	ENSMUSG00000052369	Tmem106c	AI046681|BC046621|D15Ertd405e	transmembrane protein 106C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-144123648-4	chr3	144123584	144123784	+	994.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	78648.0	NM_001161770	16911.0	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167660079-4	chr2	167659920	167660120	+	818.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145538, intron 1 of 5)	intron (NM_145538, intron 1 of 5)	1524.0	NM_145538	407243.0	Mm.4863	NM_145538	ENSMUSG00000090213	Tmem189	AI840826|Kua	transmembrane protein 189	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-83878699-1	chr7	83878599	83878799	+	591.0	f1_balb.idr	Intergenic	Intergenic	5642.0	NM_030705	80889.0	Mm.272998	NM_030705	ENSMUSG00000070462	Tlnrd1	AW061151|Mesdc1	talin rod domain containing 1	protein-coding	0.289488859485489	0.988459249146237	0.307538812827302	0.485708212110259	0.291181954097445	0.868473731936532	0.309455014431879	1.18533061666216	0.907275142987562	0.628121479932197	1
Merged-chr14-120279075-4	chr14	120278971	120279171	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360380, intron 1 of 7)	intron (NM_001360380, intron 1 of 7)	3402.0	NM_001360380	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-14739637-2	chr9	14739537	14739737	+	703.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177905, intron 1 of 18)	intron (NM_177905, intron 1 of 18)	1096.0	NM_177905	330890.0	Mm.334969	NM_177905	ENSMUSG00000036912	Piwil4	9230101H05Rik|Miwi2	piwi-like RNA-mediated gene silencing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166085965-2	chr2	166085865	166086065	+	572.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252579, intron 7 of 20)	intron (NM_001252579, intron 7 of 20)	69320.0	NM_001355619	72043.0	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-83828550-4	chr18	83828420	83828620	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	258042.0	NM_001081300	110796.0	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-108567984-4	chr9	108567866	108568066	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029947)	promoter-TSS (NR_029947)	-353.0	NR_029577	387186.0		NR_029577	ENSMUSG00000105497	Mir191	Mirn191|mir-191|mmu-mir-191	microRNA 191	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81221921-2	chr10	81221821	81222021	+	822.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_178662, intron 2 of 12)	intron (NM_178662, intron 2 of 12)	8858.0	NM_178662	16467.0	Mm.127681	NM_178662	ENSMUSG00000034958	Atcay	3322401A10Rik|BB077577|BNIP-H|CLAC|hes|ji	ataxia, cerebellar, Cayman type	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-87949228-4	chr17	87949164	87949364	+	778.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25786.0	NM_010830	17688.0	Mm.18210	NM_010830	ENSMUSG00000005370	Msh6	AU044881|AW550279|GTBP|Gtmbp	mutS homolog 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-40158378-2	chr4	40158278	40158478	+	652.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007386, intron 1 of 20)	intron (NM_007386, intron 1 of 20)	15113.0	NM_007386	11428.0	Mm.331547	NM_007386	ENSMUSG00000028405	Aco1	Aco-1|Irebp|Irp1	aconitase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-105412042-1	chr7	105411942	105412142	+	598.0	f0_c57.idr	Intergenic	Intergenic	7474.0	NM_001033317	233649.0	Mm.99556	NM_001033317	ENSMUSG00000030897	Cnga4	-	cyclic nucleotide gated channel alpha 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126583215-3	chr8	126583090	126583290	+	874.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10246.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21015361-4	chr9	21015288	21015488	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010493)	promoter-TSS (NM_010493)	-552.0	NM_010493	15894.0	Mm.435508	NM_010493	ENSMUSG00000037405	Icam1	CD54|Icam-1|Ly-47|MALA-2	intercellular adhesion molecule 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167712400-2	chr2	167712300	167712500	+	848.916626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21223.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-31198803-4	chr9	31198715	31198915	+	928.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357698, intron 1 of 17)	intron (NM_001357698, intron 1 of 17)	13033.0	NM_001357698	11804.0	Mm.19133	NM_009691	ENSMUSG00000031996	Aplp2	AI790698|APLP-2|CDEBP	amyloid beta (A4) precursor-like protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-109021754-2	chr7	109021654	109021854	+	562.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021885, intron 3 of 11)	intron (NM_021885, intron 3 of 11)	10874.0	NM_021885	22141.0	Mm.439722	NM_021885	ENSMUSG00000031028	Tub	rd5|tub	tubby bipartite transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-58232807-4	chr13	58232691	58232891	+	842.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_019832)	TTS (NM_019832)	-17138.0	NM_026842	56085.0	Mm.182053	NM_026842	ENSMUSG00000005312	Ubqln1	1110046H03Rik|1810030E05Rik|AU019746|C77538|D13Ertd372e|Da41|Dsk2|Plic-1|Plic1|Xdrp1	ubiquilin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119709006-1	chr11	119708906	119709106	+	740.0	f1_balb.idr	intron (NM_028898, intron 3 of 33)	intron (NM_028898, intron 3 of 33)	106101.0	NM_028898	74370.0	Mm.209933	NM_028898	ENSMUSG00000025583	Rptor	4932417H02Rik|Rap|Raptor|mKIAA1303	regulatory associated protein of MTOR, complex 1	protein-coding	-0.279064588225866	-0.0870973150461156	-0.27125501448994	-0.274200884407718	0.0774634922433622	-0.0827083041150327	-0.270410654570868	0.230398452998682	2.66635374551065	0.249556215840667	1
Merged-chr2-157132966-2	chr2	157132862	157133062	+	874.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001139520, intron 1 of 16)	intron (NM_001139520, intron 1 of 16)	2260.0	NM_001139520	56045.0	Mm.248478	NM_018851	ENSMUSG00000027639	Samhd1	E330031J07Rik|Mg11	SAM domain and HD domain, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-34880247-2	chr6	34880147	34880347	+	788.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001013366)	TTS (NM_001013366)	-2182.0	NM_001135611	78412.0	Mm.248440	NM_199145	ENSMUSG00000046806	3110062M04Rik	AL023049|Cyren|Mri	RIKEN cDNA 3110062M04 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120369118-4	chr8	120369028	120369228	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-119738.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141100528-2	chr7	141100430	141100630	+	717.400024	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023059)	promoter-TSS (NM_023059)	16.0	NM_023059	24058.0	Mm.38017	NM_023059	ENSMUSG00000025494	Sigirr	AI256711|TIR8	single immunoglobulin and toll-interleukin 1 receptor (TIR) domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-65667989-2	chr7	65667889	65668089	+	624.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172310, intron 10 of 18)	intron (NM_172310, intron 10 of 18)	23091.0	NM_172310	272396.0	Mm.35127	NM_172310	ENSMUSG00000030515	Tarsl2	A530046H20Rik	threonyl-tRNA synthetase-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-109123233-5	chr3	109123125	109123325	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172685)	promoter-TSS (NM_172685)	76.0	NM_172685	229731.0	Mm.33574	NM_172685	ENSMUSG00000040322	Slc25a24	2610016M12Rik	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-13577879-2	chr9	13577779	13577979	+	874.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42110.0	NM_001013813	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-31835784-2	chr17	31835684	31835884	+	997.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20020.0	NM_010831	17691.0	Mm.290941	NM_010831	ENSMUSG00000024042	Sik1	Hrt-20|Msk|Sik|Sik-1|Snf1lk	salt inducible kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131526594-4	chr1	131526473	131526673	+	994.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081011, intron 1 of 22)	CpG	788.0	NM_001081011	14270.0	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133493962-4	chr4	133493883	133494083	+	941.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081156, intron 1 of 1)	intron (NM_001081156, intron 1 of 1)	4567.0	NM_001081156	69539.0	Mm.151594	NM_001081156	ENSMUSG00000056596	Trnp1	2300002D11Rik|Trnp	TMF1-regulated nuclear protein 1	protein-coding	3.1234801894625	2.54989288912777	2.95781425246269	2.53184618835795	2.41917565844856	3.36101666851773	3.65798417170747	2.54520457500823	0.499295363126421	0.473740864102039	0.926125823511231
Merged-chr18-77937549-2	chr18	77937449	77937649	+	742.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001195633)	promoter-TSS (NM_001195633)	-918.0	NM_001195633	100502841.0	Mm.297782	NM_001195633	ENSMUSG00000039840	Epg5	4732475F16|5430411K18Rik|AI661957|AW456499|mKIAA1632	ectopic P-granules autophagy protein 5 homolog (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-146775241-1	chr6	146775141	146775341	+	596.0	f1_c57bl6.idr	intron (NM_172734, intron 12 of 13)	intron (NM_172734, intron 12 of 13)	-30289.0	NM_001289680	272322.0	Mm.333500	NM_172309	ENSMUSG00000040187	Arntl2	4632430A05Rik|BMAL2|CLIF|MOP9|bHLHe6	aryl hydrocarbon receptor nuclear translocator-like 2	protein-coding	1.50070511859777	0.8607207621574	1.84751339130683	0.832322210177259	1.29076942825368	0.864254416723784	1.86447748816084	1.48881524070949	0.291313523467744	0.833589511766443	0.998431161219273
Merged-chr1-192093081-4	chr1	192093001	192093201	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011633)	promoter-TSS (NM_011633)	-502.0	NM_011633	22033.0	Mm.380491	NM_011633		Traf5	-	TNF receptor-associated factor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-25608284-3	chr14	25608190	25608390	+	905.3110960000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 6 of 23)	intron (NM_183208, intron 6 of 23)	4777.0	NM_001309430	100188919.0	Mm.473810	NM_001309430		Gm45915	Israa	predicted gene, 45915	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-20198843-2	chr11	20198743	20198943	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	-2569.0	NM_008996	19324.0	Mm.271944	NM_008996	ENSMUSG00000020149	Rab1a	Gtbp|Rab-1|Rab1|Ypt1|mKIAA3012	RAB1A, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-27473521-7	chr7	27473404	27473604	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133210)	promoter-TSS (NM_133210)	-336.0	NM_133210	170742.0	Mm.200120	NM_133210	ENSMUSG00000055200	Sertad3	AW124805|D1Mgi51|Rbt1|Sei3	SERTA domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-22305943-2	chr10	22305843	22306043	+	692.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015465)	promoter-TSS (NR_015465)	-777.0	NR_015465	606736.0	Mm.387042	NR_015465	ENSMUSG00000097352	C920009B18Rik	-	RIKEN cDNA C920009B18 gene	ncRNA	0.0309562039642099	0.837117473222082	0.0456980291886111	0.0401876867311151	0.336253569041968	0.850343002191425	0.0472665702025087	0.041152999732167	0.400575761150088	0.852427936967477	1
Merged-chr19-10715645-1	chr19	10715545	10715745	+	545.0	f1_balb.idr	Intergenic	Intergenic	14877.0	NM_001361964	107305.0	Mm.19091	NM_181403	ENSMUSG00000048832	Vps37c	5730409F24Rik|AU042646	vacuolar protein sorting 37C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-55432509-4	chr13	55432389	55432589	+	990.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA4|LINE|L1	-5685.0	NM_021489	58992.0	Mm.42224	NM_021489	ENSMUSG00000021492	F12	FXII|HAF	coagulation factor XII (Hageman factor)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-92213935-2	chr1	92213835	92214035	+	611.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33594.0	NM_207225	208727.0	Mm.318567	NM_207225	ENSMUSG00000026313	Hdac4	4932408F19Rik|HD4	histone deacetylase 4	protein-coding	-1.8418762459921	-1.8125357239735	-1.82140854000656	-1.82869693527674	-1.56059678980999	-1.8106129477253	-1.81939992894326	-1.82739231600805	1.3620893379502	0.699511506488145	1
Merged-chr2-153225874-2	chr2	153225774	153225974	+	647.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198617)	promoter-TSS (NM_198617)	-433.0	NM_198617	241732.0	Mm.277243	NM_198617	ENSMUSG00000074671	Tspyl3	AW212607|Gm36	TSPY-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-4803581-3	chr11	4803494	4803694	+	933.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010898, intron 7 of 15)	intron (NM_010898, intron 7 of 15)	29541.0	NM_001252253	18016.0	Mm.297109	NM_010898	ENSMUSG00000009073	Nf2	merlin	neurofibromin 2	protein-coding	2.29546922410398	3.32690306885266	3.34089929916303	1.32264462625197	2.7015789006314	2.61722682863391	1.88470139976987	1.8230825472636	-0.947090972632668	0.296016121391467	0.798938452555064
Merged-chr18-88981076-4	chr18	88980973	88981173	+	910.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175542, intron 7 of 48)	intron (NM_175542, intron 7 of 48)	9043.0	NR_105777	102466633.0		NR_105777	ENSMUSG00000098676	Mir6359	Gm27328|mmu-mir-6359	microRNA 6359	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-72117984-3	chr1	72117854	72118054	+	679.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	94353.0	NM_001005423	381269.0	Mm.422636	NM_001005423	ENSMUSG00000039395	Mreg	Gm974|Wdt2|dsu	melanoregulin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-142077584-4	chr4	142077470	142077670	+	911.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145402, intron 1 of 2)	intron (NM_145402, intron 1 of 2)	-6728.0	NR_027137	100038693.0	Mm.402714	NR_027137	ENSMUSG00000073728	Tmem51os1	Gm10565|Tmem51as1	Tmem51 opposite strand 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-42325412-4	chr6	42325309	42325509	+	880.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113327)	promoter-TSS (NM_001113327)	-769.0	NM_001113327	76156.0	Mm.234314	NM_029528	ENSMUSG00000029861	Fam131b	6330503C03Rik|6530406I18Rik|AV277466	family with sequence similarity 131, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-4023302-1	chr15	4023202	4023402	+	545.0	f1_balb.idr	non-coding (NR_028266, exon 2 of 2)	non-coding (NR_028266, exon 2 of 2)	-3126.0	NM_024188	67041.0	Mm.13445	NM_024188	ENSMUSG00000022186	Oxct1	2610008O03Rik|Oxct|Oxct2a|Scot-s	3-oxoacid CoA transferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115516806-4	chr5	115516710	115516910	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011223, intron 1 of 10)	intron (NM_011223, intron 1 of 10)	10134.0	NM_133915	19303.0	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	6.17544709875155	6.4436873375773	5.15003573649391	6.1723698207995	6.33073047187853	5.38530162888443	5.46087036688123	6.09552800678775	-0.194233575504165	0.525465129268209	0.948340152465298
Merged-chr11-79257889-2	chr11	79257789	79257989	+	674.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A2|LTR|ERVL-MaLR	-3194.0	NM_019653	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150217292-4	chr4	150217209	150217409	+	984.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-16174.0	NM_009802	12353.0	Mm.232523	NM_009802	ENSMUSG00000028972	Car6	Ca6|DOC1	carbonic anhydrase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-99024259-4	chr11	99024123	99024323	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011623)	promoter-TSS (NM_011623)	-34.0	NM_011623	21973.0	Mm.4237	NM_011623	ENSMUSG00000020914	Top2a	Top-2	topoisomerase (DNA) II alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-54791645-3	chr12	54791555	54791755	+	996.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026998, intron 2 of 13)	intron (NM_026998, intron 2 of 13)	4007.0	NM_026998	72183.0	Mm.28240	NM_026998	ENSMUSG00000005656	Snx6	2010006G21Rik|2610032J07Rik|2810425K19Rik|AU018928|C85963	sorting nexin 6	protein-coding	2.95184466857505	2.70829606069738	2.36961512337379	1.33336983109941	3.30090352044399	2.8377287797418	2.38927559407925	1.33965370122191	0.355238804008401	0.710509246062068	0.998431161219273
Merged-chr8-125518514-4	chr8	125518422	125518622	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357372, intron 2 of 21)	intron (NM_001357372, intron 2 of 21)	-25689.0	NM_001081337	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	3.72939149006154	3.78710819268616	4.42970012322778	4.31580844579567	3.76022180887019	4.13249927630856	4.41187772379206	4.33616487201851	0.1057604485282	0.810003191481165	0.998431161219273
Merged-chr10-86881707-4	chr10	86881627	86881827	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138673, intron 44 of 68)	MTE2a|LTR|ERVL-MaLR	102722.0	NM_175331	103466.0	Mm.200446	NM_175331	ENSMUSG00000054027	Nt5dc3	AU040402|AW540062|C630002B14Rik|TU12B1-TY	5'-nucleotidase domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-144368947-4	chr2	144368878	144369078	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164813)	promoter-TSS (NM_001164813)	-5.0	NM_001164813	100048644.0	Mm.227925	NM_001164813	ENSMUSG00000098387	Pet117	Gm20571	PET117 homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-118279711-4	chr7	118279625	118279825	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35818.0	NR_027879	67745.0	Mm.483404	NM_183267	ENSMUSG00000055159	4930583K01Rik	-	RIKEN cDNA 4930583K01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-108462463-2	chr4	108462363	108462563	+	597.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175472, intron 2 of 30)	B1_Mur4|SINE|Alu	3037.0	NM_175472	230594.0	Mm.25181	NM_175472	ENSMUSG00000034610	Zcchc11	6030404K05Rik|9230115F04Rik|PPAPD3|mKIAA0191	zinc finger, CCHC domain containing 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91065774-4	chr2	91065699	91065899	+	973.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290765, intron 3 of 9)	intron (NM_001290765, intron 3 of 9)	4516.0	NM_026721	68427.0	Mm.192375	NM_026721	ENSMUSG00000002105	Slc39a13	1100001L14Rik|AA387663|ZIP-13|ZIP13	solute carrier family 39 (metal ion transporter), member 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-34409431-4	chr18	34409334	34409534	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163004)	promoter-TSS (NM_001163004)	11.0	NM_016927	53871.0	Mm.445792	NM_016927	ENSMUSG00000014503	Pkd2l2	TRPP5	polycystic kidney disease 2-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166730361-4	chr2	166730272	166730472	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16540.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-116949704-4	chr13	116949612	116949812	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081009, intron 3 of 26)	intron (NM_001081009, intron 3 of 26)	75804.0	NM_001081009	52552.0	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-8173151-4	chr14	8173073	8173273	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024221)	promoter-TSS (NM_024221)	-181.0	NM_024221	68263.0	Mm.301527	NM_024221	ENSMUSG00000021748	Pdhb	2610103L06Rik|AL024199|C81408	pyruvate dehydrogenase (lipoamide) beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101249110-1	chr15	101249010	101249210	+	599.0	f1_c57bl6.idr	Intergenic	Intergenic	-17736.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	-0.734697168562934	-1.28094420828655	-1.29131886204401	-1.29984091153697	-1.31008363841169	-1.2786959775384	-1.28897026783925	-1.29831546875223	-2.42902550944018	0.482518537989684	1
Merged-chr6-87535216-7	chr6	87535113	87535313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1954.0	NM_001286610	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95994682-4	chr3	95994570	95994770	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023320, intron 2 of 5)	intron (NM_023320, intron 2 of 5)	1169.0	NM_023320	67220.0	Mm.458147	NM_023320	ENSMUSG00000015745	Plekho1	2810052M02Rik|CKIP-1|Ckip1|JZA-20|Jza2	pleckstrin homology domain containing, family O member 1	protein-coding	3.27908224818583	2.69042662420229	2.68950126514302	2.60908603771682	2.07480914952872	1.58807030180339	1.25352393779027	1.21861451177591	-3.01932440899985	0.00190209019128797	0.0321426452324972
Merged-chr6-115284316-4	chr6	115284212	115284412	+	895.091675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32107.0	NM_001356406	110595.0	Mm.255607	NM_080639	ENSMUSG00000030317	Timp4	Timp-4	tissue inhibitor of metalloproteinase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-35233386-2	chr7	35233286	35233486	+	583.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18041.0	NM_001024707	435965.0	Mm.333783	NM_001024707	ENSMUSG00000001802	Lrp3	-	low density lipoprotein receptor-related protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-60695814-2	chr18	60695713	60695913	+	608.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001348100, intron 10 of 14)	intron (NM_001348100, intron 10 of 14)	31753.0	NM_001348103	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140638735-2	chr5	140638635	140638835	+	891.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001308040, intron 1 of 12)	intron (NM_001308040, intron 1 of 12)	10296.0	NM_001308040	78339.0	Mm.28947	NM_175274	ENSMUSG00000036565	Ttyh3	2900029G13Rik|AI414930|TTY3|mTTY3	tweety family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-63804560-2	chr9	63804460	63804660	+	768.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46566.0	NM_016769	17127.0	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-21651171-2	chr16	21651071	21651271	+	594.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001001881, exon 2 of 2)	3' UTR (NM_001001881, exon 2 of 2)	43494.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-121651912-3	chr3	121651798	121651998	+	869.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5445.0	NR_036458	100503044.0	Mm.65320	NM_176992	ENSMUSG00000044522	A730020M07Rik	-	RIKEN cDNA A730020M07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-21595873-4	chr16	21595786	21595986	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081366, intron 44 of 46)	intron (NM_001081366, intron 44 of 46)	98779.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-99627337-3	chr12	99627229	99627429	+	858.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045288, intron 1 of 1)	intron (NR_045288, intron 1 of 1)	645.0	NR_045288	73457.0	Mm.383439	NR_045288	ENSMUSG00000100211	1700064M15Rik	-	RIKEN cDNA 1700064M15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84904703-2	chr8	84904603	84904803	+	668.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010635, intron 2 of 2)	intron (NM_010635, intron 2 of 2)	2775.0	NM_010635	16596.0	Mm.4847	NM_010635	ENSMUSG00000054191	Klf1	Eklf|Nan	Kruppel-like factor 1 (erythroid)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-6469587-3	chr13	6469501	6469701	+	877.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-78556.0	NM_145131	69617.0	Mm.41933	NM_145131	ENSMUSG00000021193	Pitrm1	2310012C15Rik|AA410010|MP-1|MP1|Ntup1|PreP|mKIAA1104	pitrilysin metallepetidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-64836778-2	chr11	64836679	64836879	+	762.5	f0_c57.idr|f1_c57bl6.idr	Intergenic	MTD-int|LTR|ERVL-MaLR	-142256.0	NM_023479	68626.0	Mm.157711	NM_023479	ENSMUSG00000020549	Elac2	1110017O07Rik|D11Wsu80e|Hpc2	elaC ribonuclease Z 2	protein-coding	4.0210951502692	4.07805940979054	3.63714520619071	2.90874941531045	3.23776355376731	3.7128663114917	3.02420666321474	1.62777758646687	-0.989585984210152	0.139305872788448	0.582908112665358
Merged-chr8-104251319-3	chr8	104251228	104251428	+	993.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037841, intron 1 of 2)	intron (NM_001037841, intron 1 of 2)	467.0	NM_001286383	75458.0	Mm.269219	NM_029295	ENSMUSG00000054400	Cklf	1700001C14Rik|1810018M11Rik|A730028G07Rik|C32|CKLF1|CKLF3|CKLF4|CKLF5|Cklf2|Cklf6|HSPC224|UCK-1	chemokine-like factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123085050-2	chr5	123084950	123085150	+	801.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039723, intron 1 of 11)	intron (NM_001039723, intron 1 of 11)	8775.0	NM_001039723	330189.0	Mm.391872	NM_001039723	ENSMUSG00000054434	Tmem120b	-	transmembrane protein 120B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-119945685-2	chr9	119945585	119945785	+	626.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028735, intron 8 of 28)	intron (NM_028735, intron 8 of 28)	8079.0	NM_028735	74052.0	Mm.189573	NM_028735	ENSMUSG00000032514	Ttc21a	4921538N17Rik|AA387572|Thm2	tetratricopeptide repeat domain 21A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-76504410-4	chr14	76504290	76504490	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009366)	promoter-TSS (NM_009366)	-120.0	NM_009366	21807.0	Mm.153272	NM_009366	ENSMUSG00000022010	Tsc22d1	AA589566|AW105905|Egr5|TSC-22|Tgfb1i4|Tsc|Tsc22	TSC22 domain family, member 1	protein-coding	5.59717296637889	5.11637564113129	5.18400871011342	4.98468153050607	5.86091216701545	4.1819600122635	5.57968832047317	5.17688706534604	0.111924703304157	0.754369167322384	0.998431161219273
Merged-chr15-53563098-4	chr15	53562970	53563170	+	975.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177225, intron 4 of 4)	intron (NM_177225, intron 4 of 4)	51209.0	NR_039538	100628567.0		NR_039538	ENSMUSG00000104794	Mir28c	mmu-mir-28c	microRNA 28c	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-149683047-4	chr4	149682955	149683155	+	752.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029837, intron 1 of 23)	MTB_Mm|LTR|ERVL-MaLR	-6966.0	NM_001164051	18707.0	Mm.229108	NM_008840	ENSMUSG00000039936	Pik3cd	2410099E07Rik|2610208K16Rik|AW545373|p110delta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding	-0.830763420631915	-0.607135855854967	-0.823062620430963	-0.825949503812935	-0.830045615759914	-0.0300785506937921	-0.822239121149566	-0.8254444743203	2.3374437286744	0.422031045616707	1
Merged-chr18-11718363-4	chr18	11718269	11718469	+	977.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081223, intron 8 of 18)	intron (NM_001081223, intron 8 of 18)	61020.0	NM_001081223	225182.0	Mm.154275	NM_175458	ENSMUSG00000041238	Rbbp8	9930104E21Rik|CtIP|RBBP-8|RIM|SAE2	retinoblastoma binding protein 8, endonuclease	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-181212694-2	chr2	181212642	181212842	+	890.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_011481, exon 1 of 8)	exon (NM_011481, exon 1 of 8)	429.0	NM_011481	20811.0	Mm.4752	NM_011481	ENSMUSG00000027579	Srms	A230069J08Rik|srm	src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-97884409-4	chr15	97884297	97884497	+	903.783325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009504, intron 3 of 9)	intron (NM_009504, intron 3 of 9)	23899.0	NM_009504	22337.0	Mm.245084	NM_009504	ENSMUSG00000022479	Vdr	Nr1i1	vitamin D (1,25-dihydroxyvitamin D3) receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166728435-4	chr2	166728341	166728541	+	902.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J1|LTR|ERVL-MaLR	-14609.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	4.04902438227452	3.92942506519491	3.15900844364056	3.26042429325575	3.71899294929708	2.58138649492815	3.3813714277838	3.08403587056441	-0.608193805991543	0.298032176447024	0.800257675359925
Merged-chr17-26514865-4	chr17	26514760	26514960	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6388.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-131873473-4	chr4	131873338	131873538	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020587)	promoter-TSS (NM_020587)	-201.0	NM_020587	57317.0	Mm.2478	NM_020587	ENSMUSG00000028911	Srsf4	5730499P16Rik|AW550192|MNCb-2616|SRp75|Sfrs4	serine/arginine-rich splicing factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-60762277-2	chr18	60762177	60762377	+	910.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12319.0	NM_020600	20044.0	Mm.43778	NM_020600	ENSMUSG00000024608	Rps14	2600014J02Rik|AL023078	ribosomal protein S14	protein-coding	-1.8418762459921	-1.8125357239735	-1.82140854000656	-1.82869693527674	-1.56059678980999	-1.8106129477253	-1.81939992894326	-1.82739231600805	1.3620893379502	0.699511506488145	1
Merged-chr11-55099014-6	chr11	55098912	55099112	+	778.733337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010299, intron 1 of 3)	B1_Mm|SINE|Alu	1027.0	NM_010299	14667.0	Mm.287807	NM_010299	ENSMUSG00000000594	Gm2a	AA408702|AW215435|GM2-AP|SAP-3	GM2 ganglioside activator protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-138519418-4	chr3	138519329	138519529	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6762.0	NM_007917	13684.0	Mm.3941	NM_007917	ENSMUSG00000028156	Eif4e	EG668879|Eif4e-ps|If4e|eIF-4E	eukaryotic translation initiation factor 4E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-46489244-4	chr4	46489107	46489307	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053179)	promoter-TSS (NM_053179)	-122.0	NM_053179	94181.0	Mm.249349	NM_053179	ENSMUSG00000028334	Nans	4632418E04Rik|BB056474|Sas	N-acetylneuraminic acid synthase (sialic acid synthase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-142103485-2	chr4	142103385	142103585	+	843.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_144531, exon 14 of 14)	3' UTR (NM_144531, exon 14 of 14)	-19181.0	NM_145402	214359.0	Mm.27587	NM_145402	ENSMUSG00000040616	Tmem51	BC003277	transmembrane protein 51	protein-coding	0.135491720470377	-0.099762869651459	-0.104127098814091	0.17687006791816	0.141695338788724	-0.0987764100463237	-0.10316621185574	0.492010433819099	0.87443773731848	0.690180506845505	1
Merged-chr19-3378789-4	chr19	3378681	3378881	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013495, intron 15 of 18)	intron (NM_013495, intron 15 of 18)	-10076.0	NM_001039658	17771.0	Mm.209941	NM_010841	ENSMUSG00000024905	Tesmin	Mtl5	testis expressed metallothionein like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-72199975-7	chr4	72199940	72200140	+	993.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001285529, exon 1 of 20)	5' UTR (NM_001285529, exon 1 of 20)	853.0	NM_011599	21885.0	Mm.278444	NM_011599	ENSMUSG00000008305	Tle1	C230057C06Rik|Estm14|Grg-1|Grg1|Tle4l	transducin-like enhancer of split 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-173437736-3	chr1	173437633	173437833	+	777.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013779, intron 2 of 8)	MIRb|SINE|MIR	17129.0	NM_001013779	383619.0	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	0.494864891142165	0.530978922337419	1.39947428619982	1.51681866196891	0.825579735056728	0.533570968808376	1.19515612310525	0.51185969903504	-1.22010042872629	0.471898463349915	0.926125823511231
Merged-chr8-75095813-2	chr8	75095713	75095913	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010442, intron 1 of 4)	intron (NM_010442, intron 1 of 4)	2195.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-88550866-2	chr4	88550766	88550966	+	705.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7379.0	NM_206870	242517.0	Mm.377261	NM_206870	ENSMUSG00000096011	Ifna15	Gm12597|Ifnaa|MuIFN-alpha-A	interferon alpha 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-99251533-4	chr5	99251422	99251622	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181318, intron 1 of 13)	intron (NM_181318, intron 1 of 13)	1405.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-106652063-4	chr7	106651967	106652167	+	962.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7422.0	NM_001277182	434223.0	Mm.276443	NM_001277179		Gm1966	-	predicted gene 1966	protein-coding	5.98606462575276	5.68563030405037	5.06000564399169	5.65707417375888	4.40526220144913	5.04846834312304	4.43733794351078	4.47003825309578	-1.21250146851955	0.000226565649920274	0.00595255766659149
Merged-chr11-77361170-3	chr11	77361059	77361259	+	821.266663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291190, intron 1 of 13)	intron (NM_001291190, intron 1 of 13)	12879.0	NM_001291190	237860.0	Mm.440381	NM_177710	ENSMUSG00000037926	Ssh2	SSH-2|SSH-2L|mSSH-2L	slingshot protein phosphatase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-57213244-2	chr12	57213144	57213344	+	584.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER65D|LTR|ERV1	-15772.0	NM_172577	217593.0	Mm.32835	NM_172577	ENSMUSG00000035472	Slc25a21	9930033G19Rik|A630030I10|BB158148	solute carrier family 25 (mitochondrial oxodicarboxylate carrier), member 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-126167361-2	chr2	126167261	126167461	+	565.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15220.0	NM_026981	69185.0	Mm.29019	NM_026981	ENSMUSG00000023330	Dtwd1	1810033A06Rik	DTW domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-65309093-4	chr5	65308968	65309168	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011258, intron 4 of 24)	MTE2b|LTR|ERVL-MaLR	26571.0	NM_011258	19687.0	Mm.148877	NM_011258	ENSMUSG00000029191	Rfc1	140kDa|Alp145|RFC140|Recc1	replication factor C (activator 1) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-34048192-1	chr11	34048092	34048292	+	826.0	f0_balb.idr	intron (NM_010696, intron 1 of 20)	intron (NM_010696, intron 1 of 20)	1264.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-76361631-1	chr6	76361531	76361731	+	626.0	f1_balb.idr	Intergenic	Intergenic	-880846.0	NR_155299	74342.0	Mm.292568	NM_028880	ENSMUSG00000060780	Lrrtm1	4632401D06Rik|AW125451	leucine rich repeat transmembrane neuronal 1	protein-coding	0.900330324261859	0.232051461012442	1.03970686934523	0.218404631936521	0.209909457594443	0.233774874233134	0.226069959494407	0.801161283968579	-1.50361826186958	0.464256852370518	1
Merged-chr14-51128972-4	chr14	51128872	51129072	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030098)	promoter-TSS (NM_030098)	-65.0	NM_030098	78416.0	Mm.103835	NM_030098	ENSMUSG00000021880	Rnase6	9530043P15Rik|BB119466	ribonuclease, RNase A family, 6	protein-coding	-0.846755838781365	-0.833994026935199	-0.024967771609966	-0.84209062846828	-0.686233310640013	-0.830987738823762	-0.838492001568705	-0.841600955364382	-2.35902526805363	0.421669544766396	1
Merged-chr9-33169244-3	chr9	33169136	33169336	+	722.922241	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-240270.0	NR_131058	330917.0	Mm.488283	NR_131058		Gm27162	A430016B06	predicted gene 27162	ncRNA	1.38879444803925	1.39855270319508	1.35517034737724	0.965951685680534	1.86862549856327	1.56583130638458	1.86090353149661	1.326928451364	1.45135083858143	0.218915670943814	0.71029504130311
Merged-chr9-59680162-4	chr9	59680086	59680286	+	852.81665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011099)	TTS (NM_011099)	23818.0	NM_011099	18746.0	Mm.326167	NM_011099	ENSMUSG00000032294	Pkm	AA414905|AL024370|AL024424|Pk-2|Pk-3|Pk3|Pkm2	pyruvate kinase, muscle	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125692956-2	chr6	125692856	125693056	+	786.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_153589, intron 1 of 25)	intron (NM_153589, intron 1 of 25)	2537.0	NM_153589	243634.0	Mm.333398	NM_153589	ENSMUSG00000038115	Ano2	BC033409|Tmem16b	anoctamin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80535127-4	chr7	80534967	80535167	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007550)	promoter-TSS (NM_007550)	52.0	NM_001042527	12144.0	Mm.12932	NM_007550	ENSMUSG00000030528	Blm	-	Bloom syndrome, RecQ like helicase	protein-coding	4.25262854223795	5.0204218618455	4.86880312653706	5.24769655563348	4.90799517371908	5.01119682461565	4.4691670841273	5.21338995869541	0.0474723058384879	0.893825072557249	0.998431161219273
Merged-chr6-57822261-2	chr6	57822161	57822361	+	889.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146168, intron 1 of 4)	intron (NM_146168, intron 1 of 4)	2864.0	NM_146168	232023.0	Mm.24642	NM_146168	ENSMUSG00000037788	Vopp1	AW146242|Ecop	vesicular, overexpressed in cancer, prosurvival protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-46987761-3	chr7	46987654	46987854	+	987.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_033461)	TTS (NR_033461)	11122.0	NR_033461	629141.0	Mm.229259	NR_033461	ENSMUSG00000056509	Gm9999	-	predicted gene 9999	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-56797032-4	chr6	56796942	56797142	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001362209, exon 1 of 4)	5' UTR (NM_001362209, exon 1 of 4)	171.0	NM_001362211	210973.0	Mm.57295	NM_145958	ENSMUSG00000059486	Kbtbd2	BC022962|Bklhd1|mKIAA1489	kelch repeat and BTB (POZ) domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-84784813-4	chr18	84784652	84784852	+	840.645874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40685.0	NR_155706	102641800.0		NR_155706		Gm38576	-	predicted gene, 38576	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-60756586-2	chr19	60756497	60756697	+	729.0	f0_balb.idr|f1_balb.idr	exon (NM_178421, exon 1 of 1)	exon (NM_178421, exon 1 of 1)	610.0	NM_178421	332397.0	Mm.186390	NM_178421	ENSMUSG00000072437	Nanos1	NOS-1	nanos C2HC-type zinc finger 1	protein-coding	2.3694233905192	2.68065536476267	1.18346337619315	1.15571620992513	2.68273476560725	2.79059412093983	1.87223511193553	1.41993738776953	0.60646408064911	0.577434310182375	0.96585843058813
Merged-chr2-122164494-4	chr2	122164395	122164595	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080510, intron 1 of 6)	intron (NM_080510, intron 1 of 6)	3795.0	NM_080510	70928.0	Mm.379188	NM_080510	ENSMUSG00000033368	Trim69	4921519C19Rik|Rnf36|Trif|Trimless	tripartite motif-containing 69	protein-coding	5.65831841176776	5.58007230845121	4.86793799801701	4.82402705511593	4.97857259817873	5.05570313289601	4.71911239027297	5.42466719883412	-0.2572869331057	0.440583525142347	0.909622771823657
Merged-chr3-89308304-4	chr3	89308187	89308387	+	749.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14592.0	NM_010108	13638.0	Mm.331159	NM_010108	ENSMUSG00000028039	Efna3	AW494418|EFL-2|Ehk1-L|Epl3|LERK-3	ephrin A3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-59163092-3	chr7	59162996	59163196	+	886.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	-65654.0	NM_001033962	22215.0	Mm.9002	NM_011668	ENSMUSG00000025326	Ube3a	4732496B02|5830462N02Rik|A130086L21Rik|Hpve6a	ubiquitin protein ligase E3A	protein-coding	0.341701191909855	-0.024068785056038	-0.0296408472898359	-0.0339465151396865	0.450515683134623	0.719924662596355	-0.0284110746470069	-0.0331938863794816	1.89695195367453	0.402807623209562	1
Merged-chr14-30200513-4	chr14	30200417	30200617	+	974.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083616, intron 3 of 46)	intron (NM_001083616, intron 3 of 46)	152969.0	NM_001302637	12289.0	Mm.9772	NM_028981	ENSMUSG00000015968	Cacna1d	8430418G19Rik|C79217|Cach3|Cacn4|Cacnl1a2|Cav1.3|Cchl1a|Cchl1a2|D-LTCC	calcium channel, voltage-dependent, L type, alpha 1D subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-31143354-2	chr2	31143254	31143454	+	546.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1346.0	NM_001038700	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-113014024-2	chr13	113013924	113014124	+	550.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20156.0	NM_001037914	622408.0	Mm.360976	NM_001037914	ENSMUSG00000074651	Mcidas	EG622408|Gm6320|Idas|Mci|Mcin	multiciliate differentiation and DNA synthesis associated cell cycle protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-91176365-3	chr8	91176260	91176460	+	996.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40866.0	NM_010241	14339.0	Mm.324588	NM_010241	ENSMUSG00000031667	Aktip	AL023020|Fif|Ft|Ft1|Fts	thymoma viral proto-oncogene 1 interacting protein	protein-coding	4.12037564827661	4.50037809055602	4.6844361607571	3.48785052924338	2.2418050590336	2.39195306230705	1.49300444267272	1.73068436620968	-3.77752696649214	1.04673707755198e-07	9.21756731789455e-06
Merged-chr16-36709014-3	chr16	36708914	36709114	+	981.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285788, intron 2 of 7)	intron (NM_001285788, intron 2 of 7)	15036.0	NM_001285791	106347.0	Mm.17807	NM_134109	ENSMUSG00000022900	Ildr1	AU041483|AU044638	immunoglobulin-like domain containing receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-36456997-2	chr10	36456897	36457097	+	671.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-49810.0	NM_001253355	319415.0	Mm.332442	NM_001081208	ENSMUSG00000044499	Hs3st5	D930005L05Rik|Gm1151|Hs3ost5	heparan sulfate (glucosamine) 3-O-sulfotransferase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-118376633-4	chr5	118376539	118376739	+	979.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	131412.0	NM_001081236	76792.0	Mm.103428	NM_001081236	ENSMUSG00000032840	2410131K14Rik	-	RIKEN cDNA 2410131K14 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-22125023-4	chr8	22124947	22125147	+	850.9249880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347318)	promoter-TSS (NM_001347318)	20.0	NM_177898	330721.0	Mm.113940	NM_177898	ENSMUSG00000037738	Nek5	6530411J22|BB049667	NIMA (never in mitosis gene a)-related expressed kinase 5	protein-coding	3.31539397861368	3.00283274093155	2.63709498233873	1.8109056353666	3.96901945754688	2.59921832443874	4.00986041427868	2.70458672699156	1.11813631878345	0.120504477806327	0.544833604198046
Merged-chr3-79559313-4	chr3	79559213	79559413	+	955.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162999, intron 1 of 16)	intron (NM_001162999, intron 1 of 16)	8366.0	NM_001162999	329679.0	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-3516908-4	chr5	3516779	3516979	+	989.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 6 of 7)	intron (NM_009873, intron 6 of 7)	-26954.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80530924-1	chr7	80530824	80531024	+	571.0	f0_balb.idr	intron (NM_001042527, intron 1 of 21)	intron (NM_001042527, intron 1 of 21)	4074.0	NM_007550	12144.0	Mm.12932	NM_007550	ENSMUSG00000030528	Blm	-	Bloom syndrome, RecQ like helicase	protein-coding	-1.02543723553113	-1.26179608770366	-1.27181898384341	-1.28005208915589	-1.28898057388941	-1.25962408429867	-1.269550019853	-0.980232207918307	0.177854362415921	0.958931262152103	1
Merged-chr5-38621017-2	chr5	38620907	38621107	+	608.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59412.0	NM_011715	22388.0	Mm.2654	NM_011715	ENSMUSG00000005103	Wdr1	Aip1|D5Wsu185e|rede	WD repeat domain 1	protein-coding	-0.189701771857788	-0.175977387631901	-0.180483681191771	-0.0241892613407279	-0.188847700135769	0.313213638840256	0.383922782862851	-0.0213981699735289	2.89496690991318	0.196868439002626	1
Merged-chr7-141466246-4	chr7	141466149	141466349	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001025103, exon 10 of 10)	3' UTR (NM_001025103, exon 10 of 10)	-1113.0	NM_009842	12476.0	Mm.30246	NM_009842	ENSMUSG00000025510	Cd151	PETA-3|SFA-1|Tspan24	CD151 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100353344-2	chr11	100353244	100353444	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359052, intron 6 of 12)	MIRc|SINE|MIR	2784.0	NM_001359052	15114.0	Mm.281700	NM_010404	ENSMUSG00000006930	Hap1	HAP-1	huntingtin-associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-59189751-4	chr17	59189660	59189860	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-176438.0	NM_026497	67993.0	Mm.36507	NM_026497	ENSMUSG00000024228	Nudt12	0610016O18Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-43557315-4	chr17	43557214	43557414	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11137.0	NM_013737	27226.0	Mm.9277	NM_013737	ENSMUSG00000023913	Pla2g7	PAF-AH|R75400	phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-6335472-3	chr18	6335355	6335555	+	914.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-93931.0	NM_008448	16573.0	Mm.223744	NM_008448	ENSMUSG00000006740	Kif5b	AL022807|Khc|Khcs|Kns1|Ukhc	kinesin family member 5B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-36538710-3	chr19	36538608	36538808	+	757.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15931.0	NM_001163471	226098.0	Mm.61107	NM_172637	ENSMUSG00000041180	Hectd2	4921524L07|A630025O09Rik|AW212605	HECT domain E3 ubiquitin protein ligase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-148444867-3	chr6	148444732	148444932	+	968.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347518)	promoter-TSS (NM_001347518)	-480.0	NM_001347518	387314.0	Mm.137858	NM_198967	ENSMUSG00000030306	Tmtc1	Arg99|BC023818	transmembrane and tetratricopeptide repeat containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67599546-4	chr10	67599425	67599625	+	960.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER58A|DNA|hAT-Charlie	-27566.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-174415770-4	chr2	174415663	174415863	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020580)	promoter-TSS (NM_020580)	-41.0	NM_020580	57314.0	Mm.271709	NM_020580	ENSMUSG00000016253	Nelfcd	2410003I03Rik|C77797|Th1|Th1l	negative elongation factor complex member C/D, Th1l	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-85128784-2	chr10	85128684	85128884	+	623.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028832)	promoter-TSS (NM_028832)	-757.0	NM_028832	74238.0	Mm.255401	NM_028832	ENSMUSG00000049038	Mterf2	1700007D05Rik|Mterfd3	mitochondrial transcription termination factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-69389608-2	chr13	69389505	69389705	+	685.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	144259.0	NM_198600	210106.0	Mm.315959	NM_198600	ENSMUSG00000034575	Papd7	LAK-1|POLK|Pols|TRF4|TRF4-1	PAP associated domain containing 7	protein-coding	0.920728365141007	1.85000553920152	0.683910460629947	1.44984761837611	0.421094928748756	0.465585552478477	0.451517560213004	0.439211249291441	-4.87659715934547	0.00331390036408117	0.048805454052675
Merged-chr6-114044407-2	chr6	114044307	114044507	+	602.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2327.0	NM_009723	11941.0	Mm.321755	NM_009723	ENSMUSG00000030302	Atp2b2	D6Abb2e|Gena300|PMCA2|Tmy|dfw|jog|wms|wri	ATPase, Ca++ transporting, plasma membrane 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180767697-2	chr1	180767597	180767797	+	621.875	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41654.0	NM_133225	170760.0	Mm.272981	NM_133225	ENSMUSG00000026499	Acbd3	60kDa|8430407O11Rik|D1Ertd10e|GCP60|GOLPH1|Gocap1|Pap7	acyl-Coenzyme A binding domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-101296977-4	chr4	101296892	101297092	+	926.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-31710.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	3.83000125003538	2.85588021532125	2.63085652150245	2.68098732369133	3.1012239423069	2.99694943477936	2.65171014769682	2.80860531434683	-0.388555204271855	0.567652276322304	0.962562732139494
Merged-chr8-117260332-2	chr8	117260232	117260432	+	633.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	3313.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131107798-2	chr1	131107698	131107898	+	762.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9955.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-110230991-4	chr5	110230876	110231076	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253814)	promoter-TSS (NM_001253814)	-28.0	NM_001253814	71782.0	Mm.288442	NM_027922	ENSMUSG00000029501	Ankle2	1110001J12Rik|AI661024|D5Ertd585e	ankyrin repeat and LEM domain containing 2	protein-coding	4.33555311308311	4.22319785065528	4.62224140497246	3.83416854462634	4.28255156689162	4.18373279835683	4.85753973336686	4.1772474481212	0.160873589302811	0.696898107354087	0.997929106458421
Merged-chr7-34230324-4	chr7	34230200	34230400	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008155)	promoter-TSS (NM_008155)	36.0	NM_008155	14751.0	Mm.589	NM_008155	ENSMUSG00000036427	Gpi1	Amf|Gpi|Gpi-1|Gpi-1r|Gpi-1s|Gpi-1t|Gpi1-r|Gpi1-s|Gpi1-t|Gpi1s|MF|NK|NK/GPI|Nlk|Org|Pgi|Phi	glucose phosphate isomerase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-106223241-4	chr9	106223150	106223350	+	940.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031178, intron 1 of 1)	intron (NM_031178, intron 1 of 1)	652.0	NM_031178	81897.0	Mm.44889	NM_031178	ENSMUSG00000045322	Tlr9	-	toll-like receptor 9	protein-coding	2.17182493744894	1.75738613867328	1.50703192856848	2.2898800867422	2.68543676783615	2.23234360319684	1.516596950421	1.96784132913883	0.519270771953496	0.591020190050928	0.969695538366903
Merged-chr17-79569815-4	chr17	79569718	79569918	+	837.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45082.0	NM_201361	381110.0	Mm.209801	NM_201361	ENSMUSG00000036368	Rmdn2	AW061290|Fam82a1|RMD-2|mRMD-2	regulator of microtubule dynamics 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-86966787-2	chr11	86966687	86966887	+	739.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_001005341, intron 2 of 4)	intron (NM_001005341, intron 2 of 4)	26975.0	NM_001005341	77864.0	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-174345915-2	chr2	174345815	174346015	+	560.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077507, intron 9 of 10)	intron (NM_001077507, intron 9 of 10)	15826.0	NM_001077510	14683.0	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-31761027-4	chr18	31760930	31761130	+	977.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001242430, exon 1 of 8)	5' UTR (NM_001242430, exon 1 of 8)	414.0	NM_001242430	225339.0	Mm.290804	NM_153515	ENSMUSG00000041915	Ammecr1l	5430429D03Rik|AU022236|AU040755|AW111353|E230022H04Rik	AMME chromosomal region gene 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-92448443-2	chr5	92448343	92448543	+	996.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_007644, intron 10 of 11)	intron (NM_007644, intron 10 of 11)	-10114.0	NR_105843	102466159.0		NR_105843	ENSMUSG00000099160	Mir6415	Gm27714|mmu-mir-6415	microRNA 6415	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-20795965-2	chr10	20795865	20796065	+	834.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-70887.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-27022562-4	chr8	27022455	27022655	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1244.0	NM_153592	244373.0	Mm.277699	NM_153592	ENSMUSG00000031483	Erlin2	BC036333|C87251|Spfh2	ER lipid raft associated 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-55022748-1	chr11	55022648	55022848	+	599.0	f0_balb.idr	intron (NR_138556, intron 1 of 24)	intron (NR_138556, intron 1 of 24)	10723.0	NR_138556	11749.0	Mm.265347	NM_013472	ENSMUSG00000018340	Anxa6	AW107198|Anx6|AnxVI|Cabm|Camb	annexin A6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-66508142-2	chr9	66508042	66508242	+	663.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_175206)	TTS (NM_175206)	6451.0	NM_175206	74165.0	Mm.297998	NM_175206	ENSMUSG00000050503	Fbxl22	1110004B15Rik	F-box and leucine-rich repeat protein 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-62192628-2	chr18	62192528	62192728	+	812.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12528.0	NM_001013754	225609.0	Mm.296917	NM_001013754	ENSMUSG00000054589	Gm9949	EG225609	predicted gene 9949	protein-coding	-1.08456233778703	-1.19959139480256	-1.2098580695375	-1.21829142184639	-1.22455515379535	-1.19736656355904	-1.04599225581798	-0.918352035005713	1.33959527783282	0.666235083203623	1
Merged-chr13-41804097-3	chr13	41803999	41804199	+	678.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145875, intron 4 of 6)	intron (NM_001145875, intron 4 of 6)	43389.0	NM_175417	109254.0	Mm.25195	NM_175417	ENSMUSG00000058022	Adtrp	9530008L14Rik	androgen dependent TFPI regulating protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-59804955-4	chr4	59804859	59805059	+	807.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172468)	promoter-TSS (NM_172468)	-691.0	NM_172468	209131.0	Mm.259705	NM_172468	ENSMUSG00000028385	Snx30	4732481H14Rik|C030041J06Rik	sorting nexin family member 30	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-92829498-2	chr16	92829398	92829598	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-3424.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21136104-4	chr9	21135996	21136196	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4821.0	NM_001205312	54721.0	Mm.20249	NM_018793	ENSMUSG00000032175	Tyk2	JTK1	tyrosine kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100988239-3	chr7	100988132	100988332	+	888.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23766.0	NM_001302347	18442.0	Mm.3000	NM_008773	ENSMUSG00000032860	P2ry2	P2U1|P2Y2	purinergic receptor P2Y, G-protein coupled 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-118706335-4	chr14	118706225	118706425	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033336)	promoter-TSS (NM_001033336)	-106.0	NM_001033336	239273.0	Mm.40537	NM_001033336	ENSMUSG00000032849	Abcc4	ABCC4-N1|D630049P08Rik|MOATB|MRP4	ATP-binding cassette, sub-family C (CFTR/MRP), member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-16805626-2	chr12	16805526	16805726	+	962.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-4740.0	NM_015764	268527.0	Mm.428062	NM_015764	ENSMUSG00000036523	Greb1	5730583K22Rik|9130004E13|AF180470|AU023194|mKIAA0575	gene regulated by estrogen in breast cancer protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132747815-4	chr4	132747710	132747910	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133888, intron 1 of 7)	intron (NM_133888, intron 1 of 7)	9361.0	NM_133888	100340.0	Mm.287187	NM_133888	ENSMUSG00000028885	Smpdl3b	1110054A24Rik|AU045240|Asml3b	sphingomyelin phosphodiesterase, acid-like 3B	protein-coding	5.74202288125206	6.04764694946974	5.17825522504059	6.3143421902506	5.66566684111516	6.10541009832891	5.01759847278525	6.27954976099317	-0.0397951370225495	0.899247966336442	0.998431161219273
Merged-chr11-86201264-4	chr11	86201160	86201360	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_130958)	promoter-TSS (NR_130958)	-67.0	NM_178309	237911.0	Mm.186143	NM_178309	ENSMUSG00000034329	Brip1	3110009N10Rik|8030460J03Rik|Bach1|FACJ|Fancj|OF	BRCA1 interacting protein C-terminal helicase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-69403655-3	chr18	69403550	69403750	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 3 of 19)	intron (NM_001361128, intron 3 of 19)	57490.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	1.87476916124788	2.28167784850463	1.35935343446468	2.27372571274494	2.73828502983903	2.29926006542918	3.47340944543246	2.52023229304028	1.80368180072045	0.0356872521270601	0.267498324252687
Merged-chr3-100687539-1	chr3	100687439	100687639	+	652.0	f1_c57bl6.idr	Intergenic	Intergenic	-2066.0	NM_010763	17156.0	Mm.271617	NM_010763	ENSMUSG00000008763	Man1a2	AI428775|AI528764|AI854422|Man1b|PCR2	mannosidase, alpha, class 1A, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-32210624-4	chr19	32210533	32210733	+	939.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 5 of 9)	intron (NM_144792, intron 5 of 9)	380.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-65763721-3	chr17	65763618	65763818	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133685, intron 1 of 6)	B2_Mm1a|SINE|B2	9034.0	NM_133685	106572.0	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	4.28521073974767	4.29957040928495	3.95949185721539	3.67347104558262	2.7547194503206	3.12612495568287	1.94136293071701	2.10677822164715	-2.38833268082061	8.11967188212652e-05	0.00261881245273532
Merged-chr10-56737264-4	chr10	56737159	56737359	+	951.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	305278.0	NR_152768	102640560.0	Mm.417249	NR_152768		Gm36595	-	predicted gene, 36595	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-113623062-4	chr13	113622885	113623085	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4421.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-35747333-2	chr3	35747233	35747433	+	659.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6730.0	NR_151626	76295.0	Mm.239416	NM_029570	ENSMUSG00000037400	Atp11b	1110019I14Rik|ATPIF|ATPIR|mKIAA0956	ATPase, class VI, type 11B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55837543-2	chr19	55837443	55837643	+	660.166626	f1_balb.idr|f1_c57bl6.idr	intron (NR_138565, intron 4 of 15)	intron (NR_138565, intron 4 of 15)	-57778.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-118729336-3	chr2	118729245	118729445	+	640.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290790)	promoter-TSS (NM_001290790)	-907.0	NM_001290790	18796.0	Mm.215156	NM_177568	ENSMUSG00000040061	Plcb2	AI550384|B230205M18Rik|B230399N12	phospholipase C, beta 2	protein-coding	2.8840293467807	2.72473322686987	1.7360885882339	3.56085926197168	1.34064507729101	2.45085805393466	2.98096344850738	3.62958275794501	-0.0488747622646992	0.955617548889806	0.998431161219273
Merged-chr1-84203807-3	chr1	84203719	84203919	+	770.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003948, intron 1 of 2)	intron (NM_001003948, intron 1 of 2)	15142.0	NR_105771	102465181.0		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106701873-2	chr11	106701773	106701973	+	758.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001305158, intron 2 of 14)	RMER13A|LTR|ERVK	13408.0	NM_001305158	18613.0	Mm.343951	NM_008816	ENSMUSG00000020717	Pecam1	C85791|Cd31|PECAM-1|Pecam	platelet/endothelial cell adhesion molecule 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-33654153-1	chr8	33654053	33654253	+	573.0	f0_balb.idr	intron (NM_010344, intron 1 of 12)	intron (NM_010344, intron 1 of 12)	915.0	NM_010344	14782.0	Mm.283573	NM_010344	ENSMUSG00000031584	Gsr	AI325518|D8Ertd238e|Gr-1|Gr1	glutathione reductase	protein-coding	1.19946415284171	3.0767579200677	2.81327653019594	2.21580983778161	1.20834615477632	2.5212445388428	2.83618113624452	2.08881752049654	-0.425295362820609	0.674420883706513	0.99440487726309
Merged-chr15-5185609-6	chr15	5185513	5185713	+	856.538879	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026213)	promoter-TSS (NM_026213)	53.0	NM_001355621	67515.0	Mm.254979	NM_026213	ENSMUSG00000022151	Ttc33	2410099M07Rik|2900001O04Rik|AI507072|AW538342|Osrf	tetratricopeptide repeat domain 33	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-20517841-2	chr8	20517741	20517941	+	841.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-93027.0	NR_028428	381598.0	Mm.359054	NM_001024708	ENSMUSG00000071793	2610005L07Rik	2810038F24Rik|6720476A01Rik	cadherin 11 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-138091979-3	chr4	138091880	138092080	+	696.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172703, intron 5 of 34)	intron (NM_172703, intron 5 of 34)	46538.0	NR_126429	73563.0	Mm.444294	NR_126429	ENSMUSG00000084804	1700095J12Rik	-	RIKEN cDNA 1700095J12 gene	ncRNA	2.23563329898507	2.19495120997077	1.86090180931664	2.06421578685262	2.33159153717543	1.3159625699038	1.87435146492225	2.07451898815871	-0.35453380926197	0.714117645953477	0.998431161219273
Merged-chr12-79636233-1	chr12	79636133	79636333	+	542.0	f1_c57bl6.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	288500.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131021685-4	chr1	131021588	131021788	+	869.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010548, intron 3 of 4)	intron (NM_010548, intron 3 of 4)	1843.0	NM_010548	16153.0	Mm.874	NM_010548	ENSMUSG00000016529	Il10	CSIF|Il-10	interleukin 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-50213641-4	chr11	50213541	50213741	+	924.275024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2821.0	NM_011018	18412.0	Mm.40828	NM_011018	ENSMUSG00000015837	Sqstm1	A170|OSF-6|Osi|STAP|STONE14|p62	sequestosome 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-64052237-4	chr15	64052120	64052320	+	962.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360037, intron 1 of 11)	intron (NM_001360037, intron 1 of 11)	7544.0	NM_001360038	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44430336-2	chr7	44430236	44430436	+	793.099976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12151.0	NM_198250	272381.0	Mm.44173	NM_198250	ENSMUSG00000047085	Lrrc4b	A830007M12|Lrig4	leucine rich repeat containing 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-103469296-2	chr14	103469201	103469401	+	755.0	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-44040.0	NM_022886	64929.0	Mm.244003	NM_022886	ENSMUSG00000022123	Scel	9230114I02Rik	sciellin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-6522099-2	chr11	6521999	6522199	+	570.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1141.0	NM_178440	246177.0	Mm.239554	NM_178440	ENSMUSG00000020437	Myo1g	E430002D17Rik	myosin IG	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-27667609-3	chr3	27667500	27667700	+	885.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173182, intron 1 of 25)	intron (NM_173182, intron 1 of 25)	42852.0	NM_001356953	72007.0	Mm.38832	NM_173182	ENSMUSG00000039286	Fndc3b	1600019O04Rik|AW550168|Fad104|mKIAA4164	fibronectin type III domain containing 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133480688-1	chr4	133480588	133480788	+	553.0	f0_balb.idr	intron (NM_175307, intron 1 of 1)	intron (NM_175307, intron 1 of 1)	555.0	NM_175307	100342.0	Mm.204656	NM_175307	ENSMUSG00000046694	Fam46b	4732473B16Rik|AU045678|AU046069	family with sequence similarity 46, member B	protein-coding	3.50277158906269	3.71021520790614	2.97614550079194	3.27121530135759	3.27925177325381	2.06784116295303	3.00000039790141	3.75579853502193	-0.355559117211521	0.57893186002283	0.965985075107763
Merged-chr4-149587709-2	chr4	149587609	149587809	+	691.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023051, intron 1 of 18)	intron (NM_023051, intron 1 of 18)	1241.0	NM_023051	65945.0	Mm.38993	NM_023051	ENSMUSG00000039953	Clstn1	1810034E21Rik|Cst-1|Cstn1	calsyntenin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122160330-1	chr8	122160230	122160430	+	892.0	f0_balb.idr	Intergenic	Intergenic	-121811.0	NM_009569	22761.0	Mm.3105	NM_009569	ENSMUSG00000049577	Zfpm1	FOG|Fog1	zinc finger protein, multitype 1	protein-coding	0.756698441664012	0.311139191487152	0.30467117614346	0.461130388917599	0.560460319219023	0.924586846089912	0.761524798465571	0.300553853096578	1.17155686838965	0.515761944054225	1
Merged-chr8-122547289-2	chr8	122547189	122547389	+	686.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037298, intron 1 of 50)	intron (NM_001037298, intron 1 of 50)	4040.0	NM_001037298	234839.0	Mm.37324	NM_001037298	ENSMUSG00000014444	Piezo1	9630020g22|Fam38a|mKIAA0233	piezo-type mechanosensitive ion channel component 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-59735280-1	chr10	59735180	59735380	+	933.0	f0_balb.idr	intron (NM_001359267, intron 3 of 11)	RSINE1|SINE|B4	32717.0	NM_001291443	216001.0	Mm.27199	NM_144822	ENSMUSG00000020111	Micu1	C730016L05Rik|Calc|Cbara1	mitochondrial calcium uptake 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-112858399-1	chr12	112858299	112858499	+	558.0	f1_balb.idr	intron (NM_019925, intron 1 of 2)	intron (NM_019925, intron 1 of 2)	2517.0	NM_019925	56696.0	Mm.20455	NM_019925	ENSMUSG00000021298	Gpr132	G2a	G protein-coupled receptor 132	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45415668-2	chr7	45415568	45415768	+	567.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_198190, exon 3 of 3)	exon (NM_198190, exon 3 of 3)	1973.0	NM_198190	78405.0	Mm.20344	NM_198190	ENSMUSG00000074121	Ntf5	2900040K06Rik|AI462899|NT-4|NT-5|NT4|NT4/5|Ntf-5|Ntf4	neurotrophin 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4300445-4	chr19	4300344	4300544	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290818, intron 1 of 20)	intron (NM_001290818, intron 1 of 20)	5778.0	NM_130863	110355.0	Mm.254144	NM_130863	ENSMUSG00000024858	Grk2	Adrbk-1|Adrbk1|Bark-1|beta ARK|betaARK1	G protein-coupled receptor kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-93946090-4	chr10	93946009	93946209	+	974.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17754.0	NR_029764	723908.0		NR_029764	ENSMUSG00000065607	Mir331	Mirn331|mmu-mir-331	microRNA 331	ncRNA	6.39032489402731	7.20931536202571	7.02893504731164	6.53309147781682	3.54638408044089	5.51849108632293	5.28551821991423	5.423227810296	-1.87077762038689	0.000173250978324149	0.0048117250878082
Merged-chr8-126510081-2	chr8	126509981	126510181	+	879.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35016.0	NM_001159907	212728.0	Mm.482479	NM_001159907	ENSMUSG00000090290	Tarbp1	Gm17296|Gm179	TAR RNA binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-137367926-4	chr4	137367833	137368033	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10174.0	NM_001243769	12540.0	Mm.1022	NM_009861	ENSMUSG00000006699	Cdc42	AI747189|AU018915	cell division cycle 42	protein-coding	3.77050690439162	3.86898608097578	2.09883599718603	5.00350704282001	3.80154360118263	3.72682534234526	3.98463817589711	4.20761805557571	-0.142925386247787	0.812168259542733	0.998431161219273
Merged-chr6-67124284-3	chr6	67124181	67124381	+	844.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-86874.0	NM_007836	13197.0	Mm.72235	NM_007836	ENSMUSG00000036390	Gadd45a	AA545191|Ddit1|GADD45	growth arrest and DNA-damage-inducible 45 alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-110601341-2	chr8	110601241	110601441	+	621.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_172916, exon 84 of 87)	exon (NM_172916, exon 84 of 87)	-17226.0	NR_151674	234729.0	Mm.274894	NM_146216	ENSMUSG00000010936	Vac14	AA959718|BC032215|D8Wsu151e|Tax1bp2|Trx|ingls	Vac14 homolog (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-79662045-4	chr17	79661948	79662148	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201361, intron 5 of 10)	intron (NM_201361, intron 5 of 10)	47148.0	NM_201361	381110.0	Mm.209801	NM_201361	ENSMUSG00000036368	Rmdn2	AW061290|Fam82a1|RMD-2|mRMD-2	regulator of microtubule dynamics 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127638341-2	chr10	127638241	127638441	+	719.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-4645.0	NM_009284	20852.0	Mm.121721	NM_009284	ENSMUSG00000002147	Stat6	-	signal transducer and activator of transcription 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-84188054-4	chr17	84187959	84188159	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001001806)	promoter-TSS (NM_001001806)	-112.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-151993498-2	chr2	151993398	151993598	+	649.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3013.0	NM_027172	69698.0	Mm.258262	NM_027172	ENSMUSG00000027463	Slc52a3	2310046K01Rik|RFT2	solute carrier protein family 52, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44376876-2	chr7	44376776	44376976	+	624.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-1846.0	NM_027049	69349.0	Mm.358922	NM_027049	ENSMUSG00000008028	1700008O03Rik	-	RIKEN cDNA 1700008O03 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-128849358-2	chr6	128849258	128849458	+	879.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001254946, exon 3 of 3)	3' UTR (NM_001254946, exon 3 of 3)	-23043.0	NM_030599	80782.0	Mm.6180	NM_030599	ENSMUSG00000079298	Klrb1b	Klrb1d|Ly55b|Ly55d|NKR-P1B|NKR-P1D|Nkrp1-b|Nkrp1b|Nkrp1d|ly-55b|ly-55d	killer cell lectin-like receptor subfamily B member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-151724583-2	chr1	151724483	151724683	+	696.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	30144.0	NR_151474	102640772.0		NR_151473	ENSMUSG00000100594	2810414N06Rik	-	RIKEN cDNA 2810414N06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-10831002-4	chr8	10830882	10831082	+	981.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51472.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-60467367-4	chr19	60467283	60467483	+	998.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_201615, exon 1 of 1)	exon (NM_201615, exon 1 of 1)	921.0	NM_201615	226278.0	Mm.377241	NM_201615	ENSMUSG00000045052	Prlhr	Gm339|Gpr10|Gr3|Prrpr	prolactin releasing hormone receptor	protein-coding	-0.442527638912974	0.0413289030046475	-0.716728555579753	-0.719604875535438	-0.723677489151916	-0.712169753569967	-0.715907161439898	-0.719102051654578	-3.33166116316151	0.23681787477533	1
Merged-chr16-4212396-4	chr16	4212294	4212494	+	917.7666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025432, intron 1 of 30)	intron (NM_001025432, intron 1 of 30)	1010.0	NM_001025432	12914.0	Mm.132238	NM_001025432	ENSMUSG00000022521	Crebbp	AW558298|CBP|CBP/p300|KAT3A|p300/CBP	CREB binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-52001793-2	chr11	52001693	52001893	+	649.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1327.0	NM_009458	22210.0	Mm.384918	NM_009458	ENSMUSG00000020390	Ube2b	E2-14k|HR6B|Rad6b|mHR6B	ubiquitin-conjugating enzyme E2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-76503290-2	chr11	76503190	76503390	+	941.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198018, intron 1 of 21)	intron (NM_198018, intron 1 of 21)	6129.0	NM_198018	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-25841449-2	chr8	25841349	25841549	+	809.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011791)	promoter-TSS (NM_011791)	-662.0	NM_011791	23808.0	Mm.27706	NM_011791	ENSMUSG00000031575	Ash2l	-	ASH2 like histone lysine methyltransferase complex subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-72962342-3	chr2	72962230	72962430	+	737.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001018042, intron 4 of 6)	intron (NM_001018042, intron 4 of 6)	16951.0	NM_001098425	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-68609174-2	chr14	68609074	68609274	+	555.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_183366, exon 21 of 22)	exon (NM_183366, exon 21 of 22)	-27102.0	NM_021475	58860.0	Mm.36742	NM_021475	ENSMUSG00000022057	Adamdec1	2210414L24Rik|AI574231|Dcsn	ADAM-like, decysin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-146248904-4	chr5	146248812	146249012	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153599, intron 1 of 12)	MMAR1|DNA|TcMar-Mariner	17662.0	NM_153599	264064.0	Mm.260576	NM_153599	ENSMUSG00000029635	Cdk8	-	cyclin-dependent kinase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-77984844-4	chr10	77984756	77984956	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_026431, exon 7 of 7)	3' UTR (NM_026431, exon 7 of 7)	6206.0	NM_026431	67884.0	Mm.297512	NM_026431	ENSMUSG00000020284	1810043G02Rik	AV026620|D10Jhu13e	RIKEN cDNA 1810043G02 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-119331167-2	chr13	119331067	119331267	+	728.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	77844.0	NM_008710	18115.0	Mm.132584	NM_008710	ENSMUSG00000116207	Nnt	4930423F13Rik|AI323702|BB168308	nicotinamide nucleotide transhydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-16574317-2	chr16	16574208	16574408	+	676.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301817, intron 1 of 16)	L1_Mus3|LINE|L1	-14089.0	NM_139232	224014.0	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-40406582-2	chr6	40406482	40406682	+	647.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001356375, exon 9 of 9)	3' UTR (NM_001356375, exon 9 of 9)	29553.0	NM_001356375	243780.0	Mm.333006	NM_175528	ENSMUSG00000037172	E330009J07Rik	AI841796|Lchn|mKIAA1147	RIKEN cDNA E330009J07 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-130523795-2	chr7	130523695	130523895	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3426.0	NM_001271343	11907.0	Mm.216321	NM_013799	ENSMUSG00000030850	Ate1	AI225793|AW547406	arginyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-128107949-4	chr6	128107846	128108046	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175414, intron 1 of 8)	intron (NM_175414, intron 1 of 8)	35632.0	NM_175414	109246.0	Mm.21814	NM_175414	ENSMUSG00000030352	Tspan9	6720474K14Rik|9430079M16Rik|AU018597|Tspan-9	tetraspanin 9	protein-coding	1.89000295961569	2.15188931431688	0.974591658597683	0.95675464343802	1.81329892216503	2.26773895343479	1.59552158419705	0.959908141174943	0.36642245987627	0.775740108205325	0.998431161219273
Merged-chr5-104023711-4	chr5	104023608	104023808	+	930.80835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1912.0	NM_053262	114664.0	Mm.46019	NM_053262	ENSMUSG00000029311	Hsd17b11	Dhrs8|Pan1b|SDR2|retSDR2	hydroxysteroid (17-beta) dehydrogenase 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-63821375-4	chr5	63821265	63821465	+	877.491699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029554, intron 1 of 3)	intron (NM_029554, intron 1 of 3)	8870.0	NM_029554	76261.0	Mm.38143	NM_029554	ENSMUSG00000060512	0610040J01Rik	AI662686	RIKEN cDNA 0610040J01 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-55648303-4	chr12	55648209	55648409	+	993.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003719, intron 36 of 39)	intron (NM_001003719, intron 36 of 39)	49392.0	NM_020287	56856.0	Mm.114886	NM_020287	ENSMUSG00000045440	Insm2	Mlt1	insulinoma-associated 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-78517616-2	chr9	78517516	78517716	+	608.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	-35892.0	NM_010106	13627.0	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-98289752-3	chr7	98289648	98289848	+	874.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360615, intron 1 of 10)	B2_Mm2|SINE|B2	19794.0	NM_001360616	66190.0	Mm.334041	NM_025408	ENSMUSG00000030760	Acer3	1110057L18Rik|5430429L08Rik|AV015045|Phca|aPHC	alkaline ceramidase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-40789780-2	chr12	40789660	40789860	+	656.5	f0_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 31 of 52)	intron (NM_172803, intron 31 of 52)	-234330.0	NM_053122	93757.0	Mm.363813	NM_053122	ENSMUSG00000056899	Immp2l	AI853880|IMP2|Tg(HLA-A/H2-D)2Enge	IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55231539-3	chr19	55231431	55231631	+	868.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081076, intron 4 of 20)	intron (NM_001081076, intron 4 of 20)	9705.0	NM_001081076	73707.0	Mm.489987	NM_001081076	ENSMUSG00000055523	Gucy2g	2410077I05Rik|GC-G	guanylate cyclase 2g	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-85882542-2	chr15	85882442	85882642	+	721.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028063, intron 1 of 10)	intron (NM_028063, intron 1 of 10)	3215.0	NM_028063	72026.0	Mm.158211	NM_028063	ENSMUSG00000022386	Trmu	1110005N20Rik|1600025P05Rik|AI314320|Trmt1	tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91078847-3	chr2	91078735	91078935	+	772.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CGGGGG)n|Simple_repeat|Simple_repeat	-8520.0	NM_001290765	68427.0	Mm.192375	NM_026721	ENSMUSG00000002105	Slc39a13	1100001L14Rik|AA387663|ZIP-13|ZIP13	solute carrier family 39 (metal ion transporter), member 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89482494-2	chr3	89482394	89482594	+	713.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22923.0	NM_027348	68603.0	Mm.34242	NM_026784	ENSMUSG00000027952	Pmvk	1110011E12Rik|2900002L22Rik|AV001327|PMK|PMKA|PMKASE	phosphomevalonate kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-69351339-4	chr10	69351234	69351434	+	742.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007659, intron 1 of 7)	MTC|LTR|ERVL-MaLR	1578.0	NM_007659	12534.0	Mm.281367	NM_007659	ENSMUSG00000019942	Cdk1	Cdc2|Cdc2a|p34<CDC2>	cyclin-dependent kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-173785096-4	chr2	173784998	173785198	+	895.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_019806)	TTS (NM_019806)	47527.0	NM_019806	56491.0	Mm.260456	NM_019806	ENSMUSG00000054455	Vapb	AI225786|AI840687|AI848259|D2Abb2e|R75548|VAP33b|Vamp33b	vesicle-associated membrane protein, associated protein B and C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27935251-4	chr17	27935147	27935347	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181413, intron 1 of 24)	MTC|LTR|ERVL-MaLR	25941.0	NM_181413	224650.0	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	-2.18292257394068	-2.15545247547656	-2.03304972317742	-2.17058342868585	-2.18099422382073	-2.1536522739386	-2.16187909550322	-2.16936197735154	-0.683654500252594	0.846597994014493	1
Merged-chr4-136878400-2	chr4	136878253	136878453	+	761.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7824.0	NM_009777	12260.0	Mm.2570	NM_009777	ENSMUSG00000036905	C1qb	-	complement component 1, q subcomponent, beta polypeptide	protein-coding	3.75585499781468	3.33923378958832	1.60933467514611	3.13283998059713	2.1489568073561	3.75822505417409	3.25115113974501	3.46240122231773	0.164905070056278	0.825706894431891	0.998431161219273
Merged-chr5-114856903-2	chr5	114856803	114857003	+	590.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026263, intron 1 of 11)	intron (NM_026263, intron 1 of 11)	3189.0	NM_026263	67593.0	Mm.251409	NM_026263	ENSMUSG00000029564	4930519G04Rik	1700014B12Rik	RIKEN cDNA 4930519G04 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-152940034-2	chr2	152939934	152940134	+	740.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001159376)	TTS (NM_001159376)	-6826.0	NM_010226	14239.0	Mm.205798	NM_010226	ENSMUSG00000074676	Foxs1	FREAC10|Fkh3|Fkhl18	forkhead box S1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-134686364-2	chr5	134686264	134686464	+	702.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010717, intron 2 of 15)	RSINE1|SINE|B4	2226.0	NM_010717	16885.0	Mm.15409	NM_010717	ENSMUSG00000029674	Limk1	KIZ-1|LIMK-1|Limk	LIM-domain containing, protein kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-99463290-2	chr11	99463080	99463280	+	828.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25027.0	NM_023256	66809.0	Mm.28042	NM_023256	ENSMUSG00000035775	Krt20	9030623C06Rik|Ck-20|Ck20|K20|Krt21	keratin 20	protein-coding	0.601076875372994	0.844188785887887	0.913007130868765	0.345545830720762	0.903964810762847	0.359084054950236	0.352272505694474	0.511193241852349	-0.825535425346694	0.641687282392838	1
Merged-chr11-60836674-4	chr11	60836573	60836773	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001172112, intron 1 of 6)	ORR1C1-int|LTR|ERVL-MaLR	6042.0	NM_145428	216820.0	Mm.21475	NM_145428	ENSMUSG00000042569	Dhrs7b	BC003479|C79874|C80074|PexRAP	dehydrogenase/reductase (SDR family) member 7B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-48410114-4	chr6	48410002	48410202	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362145, intron 9 of 15)	intron (NM_001362145, intron 9 of 15)	14516.0	NM_001362144	77827.0	Mm.107646	NM_133922	ENSMUSG00000042810	Krba1	A930040G15Rik|AI448780	KRAB-A domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-8350963-3	chr5	8350862	8351062	+	693.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001007220, intron 2 of 28)	intron (NM_001007220, intron 2 of 28)	17198.0	NM_001007221	11496.0	Mm.275895	NM_001007220	ENSMUSG00000040537	Adam22	2900022I03Rik|AI854032|MDC2	a disintegrin and metallopeptidase domain 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126625586-4	chr7	126625481	126625681	+	980.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019738)	promoter-TSS (NM_019738)	-111.0	NM_019738	56312.0	Mm.18742	NM_019738	ENSMUSG00000030717	Nupr1	2310032H04Rik|Com1|p8	nuclear protein transcription regulator 1	protein-coding	3.49284658253619	3.8354399139731	3.35269291462218	2.47334943104991	3.26682461171449	3.79684088657299	1.96400861164046	3.09703253673399	-0.305913476715233	0.651902586184333	0.986416236213275
Merged-chr14-122180837-2	chr14	122180737	122180937	+	694.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029556)	promoter-TSS (NM_029556)	-857.0	NM_029556	69634.0	Mm.34608	NM_029556	ENSMUSG00000025545	Clybl	0610033J05Rik|2310014M14Rik|AI256068|Clb	citrate lyase beta like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5692775-4	chr19	5692666	5692866	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022012, intron 3 of 11)	intron (NM_022012, intron 3 of 11)	3635.0	NM_022012	26403.0	Mm.185026	NM_022012	ENSMUSG00000004054	Map3k11	2610017K16Rik|Mlk3|PTK1|SPRK	mitogen-activated protein kinase kinase kinase 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-79642078-4	chr12	79641975	79642175	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	282658.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88775277-2	chr3	88775230	88775430	+	842.783325	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1727.0	NR_028359	100302730.0	Mm.482358	NR_028359		5830417I10Rik	3632445O20Rik|AA387005	gon-4-like pseudogene	pseudo	0.724012946893792	0.299416725714368	0.289202522609001	0.281201043104255	0.849760788294582	1.53765720492937	0.510229984326893	0.282606758661552	2.56984021533086	0.162877862321496	1
Merged-chr11-106744812-2	chr11	106744712	106744912	+	573.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16A1|LTR|ERVL	-6414.0	NM_001271375	380732.0	Mm.343952	NM_001033435	ENSMUSG00000040528	Milr1	Allergin-1|Gm885|Mca32	mast cell immunoglobulin like receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-70235358-4	chr12	70235254	70235454	+	860.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7513.0	NR_045174	414124.0	Mm.416164	NR_045174	ENSMUSG00000085298	F730035M05Rik	-	RIKEN cDNA F730035M05 gene	ncRNA	1.71307042341372	1.25258507533435	0.640033335778242	0.628822719233267	0.801686069619109	1.74833877923101	0.643200931090726	1.01636145550547	-0.0612793769825552	0.967986768163342	0.998431161219273
Merged-chr3-55227141-4	chr3	55227130	55227330	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15134.0	NM_019978	13175.0	Mm.393242	NM_019978	ENSMUSG00000027797	Dclk1	1700113D08Rik|2810480F11Rik|AI836758|Click-I|Cpg16|Dcamkl1|Dcl|Dclk|mKIAA0369	doublecortin-like kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-147078686-2	chr5	147078586	147078786	+	594.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_009087, exon 2 of 2)	exon (NM_009087, exon 2 of 2)	1340.0	NM_009087	20018.0	Mm.317557	NM_009087	ENSMUSG00000029642	Polr1d	1110003G10Rik|AC19|RPA16|Rpo1-3	polymerase (RNA) I polypeptide D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-61233431-2	chr9	61233331	61233531	+	616.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60378.0	NR_045334	622037.0	Mm.126243	NR_045334	ENSMUSG00000111658	B930092H01Rik	-	RIKEN cDNA B930092H01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-122887642-2	chr9	122887562	122887762	+	584.333374	f0_c57.idr|f1_c57bl6.idr	promoter-TSS (NM_001177505)	promoter-TSS (NM_001177505)	-809.0	NM_001177505	382118.0	Mm.86999	NM_001177505	ENSMUSG00000063488	Zkscan7	BC042569|Zfp167	zinc finger with KRAB and SCAN domains 7	protein-coding	0.897330809676937	1.48280146857277	0.105814088232823	0.0975657381867907	0.281333532451987	0.118625072381215	0.108145541151793	0.0990173108295945	-3.75613162262087	0.0606179352433992	1
Merged-chr2-178413891-2	chr2	178413791	178413991	+	849.68335	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081289)	promoter-TSS (NM_001081289)	572.0	NM_001085501	228966.0	Mm.472736	NM_001085501	ENSMUSG00000049999	Ppp1r3d	2610024M03Rik|Gm359	protein phosphatase 1, regulatory subunit 3D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6552541-2	chr19	6552441	6552641	+	722.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9471.0	NM_009203	20521.0	Mm.391146	NM_009203	ENSMUSG00000061742	Slc22a12	AI987855|OAT4L|Rst|Slc22al2|URAT1	solute carrier family 22 (organic anion/cation transporter), member 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-25316195-4	chr12	25316167	25316367	+	887.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	187093.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	0.825881219327627	0.654200594586749	0.438220776078606	1.19611765757336	1.27263187732837	0.448938210359068	0.440157455902714	0.612816525912339	-0.275400832496631	0.871471028920704	1
Merged-chr6-15464549-3	chr6	15464449	15464649	+	782.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	UCON9|Unknown|Unknown	-256112.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-93115338-4	chr1	93115254	93115454	+	930.337524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13480.0	NM_001110315	16560.0	Mm.276408	NM_008440	ENSMUSG00000014602	Kif1a	ATSV|C630002N23Rik|Gm1626|Kns1	kinesin family member 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-162587746-3	chr1	162587639	162587839	+	914.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356527, intron 4 of 7)	intron (NM_001356527, intron 4 of 7)	16911.0	NM_016796	53330.0	Mm.10699	NM_016796	ENSMUSG00000026696	Vamp4	D1Ertd147e|Vamp-4	vesicle-associated membrane protein 4	protein-coding	2.64616377468455	2.85296444036181	3.7619474370987	3.15959980361241	2.94593119544127	3.10410570516499	2.77787513060421	2.26302044875994	-0.658539375564945	0.330618898902622	0.83197671091297
Merged-chr11-85522884-2	chr11	85522784	85522984	+	600.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_138681, intron 16 of 25)	intron (NM_138681, intron 16 of 25)	169720.0	NM_001166643	192197.0	Mm.209989	NM_138681	ENSMUSG00000059439	Bcas3	1500019F07Rik|2610028P08Rik|AU021018|BC028339|K20D4|rudhira	breast carcinoma amplified sequence 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-142527634-4	chr3	142527536	142527736	+	971.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2700.0	NM_001083312	229900.0	Mm.45740	NM_145545	ENSMUSG00000040253	Gbp7	9830147J24Rik	guanylate binding protein 7	protein-coding	1.33922098667397	1.75931884491983	1.30470831224156	0.912622475457967	1.56588706667234	0.942982843384707	1.70864452225954	1.6513087032611	0.494535816742826	0.697436590380464	0.998073021396089
Merged-chr10-10471292-4	chr10	10471200	10471400	+	841.81665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127353, intron 1 of 36)	intron (NM_001127353, intron 1 of 36)	1014.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	1.935194585891	1.42063839037448	2.20292795929049	1.13468210273575	2.34375193286105	1.80321457353772	1.58223236449488	1.94611736394612	0.569362142411532	0.596666196387836	0.971586575449917
Merged-chr15-100669193-2	chr15	100669093	100669293	+	782.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001270537, intron 1 of 10)	intron (NM_001270537, intron 1 of 10)	307.0	NM_001270537	668218.0	Mm.451225	NM_001270537	ENSMUSG00000098112	Bin2	-	bridging integrator 2	protein-coding	0.660205545363523	1.84821828020931	0.679416582067892	0.844129554896679	0.661987491342867	1.86082954029493	0.681482890562899	0.847762916843849	0.0386286849836482	0.981491473422906	0.998431161219273
Merged-chr7-127615186-4	chr7	127615099	127615299	+	967.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177226)	promoter-TSS (NM_177226)	73.0	NR_155450	320683.0	Mm.156718	NM_177226	ENSMUSG00000045639	Zfp629	9330199A09Rik|Znf629	zinc finger protein 629	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-68368768-1	chr8	68368668	68368868	+	552.0	f0_balb.idr	intron (NR_038181, intron 1 of 3)	MER63A|DNA|hAT-Blackjack	309.0	NR_038181	73609.0	Mm.443247	NR_038181	ENSMUSG00000085197	1700125H03Rik	4930510D22Rik	RIKEN cDNA 1700125H03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-88360588-4	chr12	88360539	88360739	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028105)	promoter-TSS (NM_028105)	125.0	NM_001361599	72113.0	Mm.181387	NM_028105	ENSMUSG00000021044	Adck1	2610005A10Rik	aarF domain containing kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-26352814-2	chr2	26352714	26352914	+	981.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001139504)	promoter-TSS (NM_001139504)	-704.0	NM_001139504	52838.0	Mm.31239	NM_026828	ENSMUSG00000075467	Dnlz	1110034G11Rik|D2Bwg1335e|HEP1	DNL-type zinc finger	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102743734-4	chr12	102743630	102743830	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001324515)	promoter-TSS (NM_001324515)	11.0	NM_001324515	320351.0	Mm.86546	NM_177140	ENSMUSG00000046675	Tmem251	D230037D09Rik	transmembrane protein 251	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-29621438-3	chr6	29621336	29621536	+	950.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11587.0	NM_001347079	320938.0	Mm.276381	NM_177296	ENSMUSG00000012535	Tnpo3	5730544L10Rik|C430013M08Rik|C81142|D6Ertd313e|Trn-SR|mKIAA4133	transportin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-8589852-3	chr15	8589752	8589952	+	968.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	120955.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-180726215-4	chr2	180726118	180726318	+	873.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183161, intron 1 of 12)	intron (NM_183161, intron 1 of 12)	879.0	NM_183161	228993.0	Mm.87189	NM_183161	ENSMUSG00000023393	Slc17a9	1700019H03Rik|BC019537|Vnut	solute carrier family 17, member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124541312-4	chr5	124541233	124541433	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019770, intron 1 of 3)	CpG	542.0	NM_019770	56334.0	Mm.325307	NM_019770	ENSMUSG00000029390	Tmed2	1110032D12Rik|1810020N21Rik|Rnp24|Sid394|p24beta1	transmembrane p24 trafficking protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-130060840-4	chr3	130060746	130060946	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207209)	promoter-TSS (NM_207209)	61.0	NM_207209	99683.0	Mm.192303	NM_207209	ENSMUSG00000001052	Sec24b	AI605202|SEC24	Sec24 related gene family, member B (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-66952002-4	chr6	66951917	66952117	+	941.7333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177560, intron 3 of 4)	ORR1D1|LTR|ERVL-MaLR	55126.0	NM_001177558	14701.0	Mm.234342	NM_025278	ENSMUSG00000036402	Gng12	2010305F15Rik|AA536815|AI115529|AI314170|AI842738	guanine nucleotide binding protein (G protein), gamma 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-68239819-4	chr10	68239658	68239858	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023598, intron 3 of 9)	intron (NM_023598, intron 3 of 9)	38968.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	4.95857182298466	4.3794730751604	4.96892867745771	4.6197209443468	5.04545416544868	3.97299264692306	3.74986205488555	3.79621232583274	-0.605857461067586	0.162479565010247	0.62415042294331
Merged-chr1-152809103-4	chr1	152809021	152809221	+	966.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010877, intron 2 of 15)	RSINE1|SINE|B4	8968.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-143769746-3	chr7	143769657	143769857	+	787.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2764.0	NM_203492	381974.0	Mm.297839	NM_203492	ENSMUSG00000050276	Mrgprg	Gm1098|Mrgg	MAS-related GPR, member G	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-60772735-2	chr18	60772625	60772825	+	730.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-1871.0	NM_020600	20044.0	Mm.43778	NM_020600	ENSMUSG00000024608	Rps14	2600014J02Rik|AL023078	ribosomal protein S14	protein-coding	1.36193930809943	1.52926097962222	0.941787912048283	1.55834861056215	1.59149501410953	1.91117978657724	1.61957727880299	0.931530278836717	0.680546707561774	0.587810867345301	0.968220700072259
Merged-chr11-76027801-4	chr11	76027694	76027894	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029658)	promoter-TSS (NM_029658)	-12.0	NM_029658	76566.0	Mm.34131	NM_029658	ENSMUSG00000020846	Rflnb	1500005K14Rik|Fam101b|RefilinB|cfm	refilin B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-5080220-5	chr10	5080092	5080292	+	931.4733279999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001079686, intron 37 of 54)	intron (NM_001079686, intron 37 of 54)	-11129.0	NM_022027	64009.0	Mm.331626	NM_022027	ENSMUSG00000096054	Syne1	8B|A330049M09Rik|BE692247|C130039F11Rik|CPG2|KASH1|Myne1|mKIAA1756|myne-1	spectrin repeat containing, nuclear envelope 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-98656738-4	chr7	98656639	98656839	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172280)	promoter-TSS (NM_172280)	-170.0	NM_172280	233545.0	Mm.387819	NM_172280	ENSMUSG00000035401	Emsy	2210018M11Rik|2310016L09Rik|AU019521|AU019557	EMSY, BRCA2-interacting transcriptional repressor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-124021339-4	chr8	124021223	124021423	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133966)	promoter-TSS (NM_133966)	74.0	NM_133966	102162.0	Mm.291777	NM_133966	ENSMUSG00000038697	Taf5l	1110005N04Rik|AI849020	TATA-box binding protein associated factor 5 like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-149956320-2	chr1	149956220	149956420	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008869, intron 1 of 17)	intron (NM_008869, intron 1 of 17)	4970.0	NM_008869	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-177028192-2	chr1	177028092	177028292	+	569.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011785, intron 12 of 12)	intron (NM_011785, intron 12 of 12)	-192059.0	NR_037996	15365.0	Mm.441435	NR_037996		Hmga2-ps1	EG666235|Gm7996|Hmgic-ps1|[y]i-c	high mobility group AT-hook 2, pseudogene 1	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-123244406-4	chr6	123244280	123244480	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001190321, intron 3 of 4)	intron (NM_001190321, intron 3 of 4)	14537.0	NM_001190321	56620.0	Mm.271782	NM_020001	ENSMUSG00000023349	Clec4n	Clec6a|Clecsf10|Nkcl	C-type lectin domain family 4, member n	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127481450-4	chr10	127481362	127481562	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359246, intron 13 of 23)	intron (NM_001359246, intron 13 of 23)	-20224.0	NM_001359751	237611.0	Mm.32087	NM_177707	ENSMUSG00000040287	Stac3	9830125E18	SH3 and cysteine rich domain 3	protein-coding	4.08061254311955	2.05632830257765	3.58297510767166	3.3229255824604	3.94727334581523	2.07383981599411	3.94263487589496	3.64185393171877	0.200139810694627	0.771699651911976	0.998431161219273
Merged-chr18-61482441-3	chr18	61482344	61482544	+	941.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045419, intron 1 of 3)	intron (NR_045419, intron 1 of 3)	2163.0	NR_045419	442846.0	Mm.417648	NR_045419		A530050N04Rik	-	RIKEN cDNA A530050N04 gene	ncRNA	2.06167548877142	1.09784926763147	2.4498219870449	2.18697367008107	1.59522364995592	2.93151853928247	1.07534416586433	1.04979753744218	-0.179278010632465	0.881988909776078	0.998431161219273
Merged-chr6-114256865-2	chr6	114256765	114256965	+	802.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25770.0	NM_178703	232333.0	Mm.5260	NM_178703	ENSMUSG00000030310	Slc6a1	A730043E01|GABATHG|GABATR|GAT-1|Gabt|Gabt1|Gat1|XT-1|Xtrp1	solute carrier family 6 (neurotransmitter transporter, GABA), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122895574-2	chr5	122895474	122895674	+	892.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001003953, intron 12 of 22)	PB1D9|SINE|Alu	4776.0	NM_013910	30841.0	Mm.86406	NM_013910	ENSMUSG00000029475	Kdm2b	Cxxc2|Fbl10|Fbxl10|Jhdm1b|PCCX2	lysine (K)-specific demethylase 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-35666438-2	chr13	35666338	35666538	+	824.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009881, intron 1 of 9)	intron (NM_009881, intron 1 of 9)	6576.0	NM_009881	12593.0	Mm.29002	NM_009881	ENSMUSG00000059288	Cdyl	AI325931	chromodomain protein, Y chromosome-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-61612682-3	chr8	61612508	61612708	+	791.472229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293772, intron 10 of 21)	intron (NM_001293772, intron 10 of 21)	-21439.0	NM_001293774	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	1.19111047157342	0.834542004525958	0.625290641154631	1.1720700421863	0.608001537249373	1.27908631180737	0.972126515533733	0.939979290943121	-0.0442105719169519	0.976553841779092	1
Merged-chr8-20424831-4	chr8	20424728	20424928	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028428)	promoter-TSS (NR_028428)	-14.0	NR_028428	381598.0	Mm.359054	NM_001024708	ENSMUSG00000071793	2610005L07Rik	2810038F24Rik|6720476A01Rik	cadherin 11 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-79819851-2	chr10	79819751	79819951	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001161747, exon 8 of 8)	3' UTR (NM_001161747, exon 8 of 8)	-1170.0	NM_030218	78906.0	Mm.33087	NM_030218	ENSMUSG00000035852	Misp	9130017N09Rik	mitotic spindle positioning	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117899603-4	chr10	117899522	117899722	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25837.0	NR_045342	71067.0	Mm.410793	NR_045342	ENSMUSG00000112500	4933411E08Rik	-	RIKEN cDNA 4933411E08 gene	ncRNA	4.75541701177129	4.34537996430401	5.31124859776466	4.97811415787025	4.28788378625314	4.00184350130601	4.76121646435421	4.16903608868236	-0.696040175607665	0.0715781774399734	0.403316361736757
Merged-chr5-65577051-3	chr5	65576964	65577164	+	886.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016786, intron 3 of 6)	B1_Mur4|SINE|Alu	39819.0	NM_001310619	53323.0	Mm.319512	NM_016786	ENSMUSG00000029203	Ube2k	AW492011|D5Ertd601e|E2-25k|HIP-2|Hip2|Hypg|Lig	ubiquitin-conjugating enzyme E2K	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-23873366-4	chr18	23873272	23873472	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162941, intron 5 of 7)	intron (NM_001162941, intron 5 of 7)	69402.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-115814255-4	chr6	115814127	115814327	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110506, intron 7 of 8)	intron (NM_001110506, intron 7 of 8)	-5484.0	NM_172086	19951.0	Mm.104368	NM_172086	ENSMUSG00000057841	Rpl32	AU020185|rpL32-3A	ribosomal protein L32	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-60827535-2	chr10	60827435	60827635	+	728.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029770, intron 1 of 16)	intron (NM_029770, intron 1 of 16)	4046.0	NM_029770	107449.0	Mm.290433	NM_029770	ENSMUSG00000020099	Unc5b	6330415E02Rik|A630020F16|D10Bwg0792e|Unc5h2	unc-5 netrin receptor B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-61131047-2	chr18	61130947	61131147	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_178277)	TTS (NM_178277)	13579.0	NR_105949	102466212.0		NR_105949	ENSMUSG00000098389	Mir6983	Gm27496|mmu-mir-6983	microRNA 6983	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-114704166-2	chr2	114704066	114704266	+	616.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-49202.0	NM_001356439	66632.0	Mm.117809	NM_025675	ENSMUSG00000057147	Dph6	5730421E18Rik|Atpbd4	diphthamine biosynthesis 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-86594840-4	chr6	86594735	86594935	+	952.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-33339.0	NM_026414	67855.0	Mm.183043	NM_026414	ENSMUSG00000033508	Asprv1	2300003P22Rik|AA986851|SASP|SASPase|Taps	aspartic peptidase, retroviral-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-77269251-2	chr10	77269151	77269351	+	590.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_030262, exon 9 of 9)	3' UTR (NM_030262, exon 9 of 9)	9951.0	NM_030262	80294.0	Mm.203556	NM_030262	ENSMUSG00000020260	Pofut2	2310011G23Rik|AI256847|BC003494|C21orf80|FUT13	protein O-fucosyltransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-119336094-4	chr2	119335998	119336198	+	958.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_019454)	TTS (NM_019454)	-9901.0	NR_030683	100043609.0	Mm.185068	NR_030683	ENSMUSG00000074912	Gm14207	Dll4	predicted gene 14207	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133412468-2	chr4	133412348	133412548	+	623.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016981, intron 2 of 11)	intron (NM_016981, intron 2 of 11)	42672.0	NR_039582	100628620.0		NR_039582	ENSMUSG00000092745	Mir5122	mmu-mir-5122|mu-mir-5122	microRNA 5122	ncRNA	-0.0590725471991504	0.153401644242234	-0.0479328772946728	-0.0521170414511476	0.0905728035755258	0.464737567496343	-0.0467374706907599	0.680506075599722	3.10415616211074	0.146848292679717	1
Merged-chr2-75769292-2	chr2	75769227	75769427	+	834.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-62850.0	NM_172666	228061.0	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	-0.590535183227988	-0.927506822323212	-0.936065523452905	-0.937949444978677	-0.686580999095573	-0.925042559271787	-0.935525276798409	-0.781629005664263	0.114635924104852	0.969143117123263	1
Merged-chr5-123398040-4	chr5	123397920	123398120	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133917, intron 1 of 16)	intron (NM_133917, intron 1 of 16)	3222.0	NM_177582	208104.0	Mm.83277	NM_133917	ENSMUSG00000038342	Mlxip	AW228700|Mir|bHLHe36	MLX interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-135720089-4	chr3	135719999	135720199	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28552.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-44438609-3	chr17	44438523	44438723	+	780.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	250051.0	NM_172621	224796.0	Mm.37666	NM_172621	ENSMUSG00000023959	Clic5	5730531E12Rik|B330005L24|Gm322|jbg|nmf318	chloride intracellular channel 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-116266258-2	chr6	116266158	116266358	+	667.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290339)	promoter-TSS (NM_001290339)	-274.0	NM_001290339	67492.0	Mm.272772	NM_001081317	ENSMUSG00000042213	Zfand4	Anubl1	zinc finger, AN1-type domain 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-92867887-4	chr16	92867771	92867971	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-41797.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-82888881-4	chr9	82888781	82888981	+	942.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081216, intron 29 of 39)	intron (NM_001081216, intron 29 of 39)	59075.0	NM_001168240	65099.0	Mm.41415	NM_022986	ENSMUSG00000032251	Irak1bp1	4921528N06Rik|AI851240|Aabp3|Aip70|Simpl	interleukin-1 receptor-associated kinase 1 binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-3908687-4	chr16	3908584	3908784	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029738)	promoter-TSS (NM_029738)	5.0	NM_028484	73261.0	Mm.486226	NM_028484	ENSMUSG00000005983	1700037C18Rik	2810022L20Rik	RIKEN cDNA 1700037C18 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10847682-2	chr19	10847582	10847782	+	837.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023044, intron 1 of 7)	intron (NM_023044, intron 1 of 7)	5138.0	NM_023044	65221.0	Mm.27387	NM_023044	ENSMUSG00000024737	Slc15a3	Ci1|cI-1	solute carrier family 15, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-114076950-2	chr6	114076850	114077050	+	596.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34870.0	NM_009723	11941.0	Mm.321755	NM_009723	ENSMUSG00000030302	Atp2b2	D6Abb2e|Gena300|PMCA2|Tmy|dfw|jog|wms|wri	ATPase, Ca++ transporting, plasma membrane 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-52105460-2	chr14	52105360	52105560	+	609.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1439.0	NM_001360180	15381.0	Mm.427321	NM_016884	ENSMUSG00000060373	Hnrnpc	AL022939|D14Wsu171e|Hnrpc|Hnrpc1|Hnrpc2|hnRNPC1|hnRNPC2|hnrnp-C	heterogeneous nuclear ribonucleoprotein C	protein-coding	0.747760023770228	0.931634777813674	0.170598695051095	0.165193866308028	0.759798536744552	0.179137379720815	0.172139596484031	0.166139746640272	-1.22293113244178	0.560992891030898	1
Merged-chr12-77241031-4	chr12	77240917	77241117	+	756.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045554, intron 1 of 11)	(T)n|Simple_repeat|Simple_repeat	2278.0	NR_045554	53618.0	Mm.35628	NM_016893	ENSMUSG00000021065	Fut8	-	fucosyltransferase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-75686294-4	chr7	75686200	75686400	+	974.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 13 of 36)	intron (NM_029332, intron 13 of 36)	-162038.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-63111176-4	chr14	63111073	63111273	+	854.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11289.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-139211956-1	chr7	139211856	139212056	+	726.0	f1_balb.idr	intron (NM_001162540, intron 1 of 11)	intron (NM_001162540, intron 1 of 11)	-1032.0	NM_027164	76612.0	Mm.17757	NM_027164	ENSMUSG00000015980	Lrrc27	1700071K18Rik|2310044E02Rik	leucine rich repeat containing 27	protein-coding	0.230679013465911	0.656071846452114	0.248749610225192	0.242009124436967	0.401581898479701	1.17735812729867	1.01024215324551	0.243191119751371	2.69480080651738	0.165118408733626	1
Merged-chr17-34072269-4	chr17	34072171	34072371	+	971.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-20108.0	NM_008206	15001.0	Mm.116	NM_008206	ENSMUSG00000024334	H2-Oa	H-2Oa	histocompatibility 2, O region alpha locus	protein-coding	3.32594807406501	2.66650463125845	3.18986093181787	3.43788417481655	2.89245579825228	2.53750373262346	2.28869386134548	2.21764883623913	-1.25627978670368	0.0683650630715695	0.392211042428765
Merged-chr6-5200093-3	chr6	5200018	5200218	+	936.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6172.0	NM_011134	18979.0	Mm.237657	NM_011134	ENSMUSG00000002588	Pon1	Pon	paraoxonase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-84340327-4	chr10	84340213	84340413	+	975.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	100158.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-32911052-3	chr12	32910945	32911145	+	745.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	42744.0	NR_044986	74076.0	Mm.50114	NR_044986	ENSMUSG00000097494	4933406C10Rik	-	RIKEN cDNA 4933406C10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-108881132-4	chr3	108881032	108881232	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177091, intron 4 of 12)	intron (NM_177091, intron 4 of 12)	8876.0	NM_177091	320181.0	Mm.244233	NM_177091	ENSMUSG00000045326	Fndc7	E230011A21Rik	fibronectin type III domain containing 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-108378231-4	chr11	108378126	108378326	+	884.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17071.0	NM_013475	11818.0	Mm.2266	NM_013475	ENSMUSG00000000049	Apoh	B2GPI|beta-2-GPI|beta2-GPI	apolipoprotein H	protein-coding	1.36328022515828	2.92764121637401	1.97439290196029	3.0851932409533	2.41419236346653	2.71963706789539	3.34023425223656	3.10101296741752	0.77740629554489	0.35206142245835	0.852350828361626
Merged-chr15-91260701-3	chr15	91260603	91260803	+	646.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68696.0	NM_001358967	26874.0	Mm.295456	NM_011994	ENSMUSG00000055782	Abcd2	ABC39|ALDL1|ALDR|ALDRP	ATP-binding cassette, sub-family D (ALD), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-122145946-4	chr2	122145864	122146064	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026251, intron 2 of 17)	intron (NM_026251, intron 2 of 17)	-1723.0	NM_009735	12010.0	Mm.163	NM_009735	ENSMUSG00000060802	B2m	Ly-m11|beta2-m|beta2m	beta-2 microglobulin	protein-coding	1.97809275839073	3.67760166728758	3.76385797600367	3.83713216149429	3.87543339459746	1.73377550989105	3.23211488351771	3.90959806285116	-0.0911068331452207	0.901257129223341	0.998431161219273
Merged-chr11-32450397-2	chr11	32450312	32450512	+	703.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR41|LTR|ERVL	-4958.0	NM_001361561	327900.0	Mm.260956	NM_173784	ENSMUSG00000044949	Ubtd2	4930571L24|9630054F20Rik|AI645720	ubiquitin domain containing 2	protein-coding	0.522237136018795	0.275289646165577	0.836079837669032	0.428110645958656	0.529057281077764	0.276769468213588	0.949779643856596	0.264531023379423	0.0590225733745011	0.974051562734088	1
Merged-chr7-79780945-7	chr7	79780833	79781033	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037927, intron 17 of 17)	intron (NM_001037927, intron 17 of 17)	12657.0	NM_008588	17292.0	Mm.1404	NM_008588	ENSMUSG00000030544	Mesp1	bHLHc5	mesoderm posterior 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-13008215-2	chr17	13008115	13008315	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_013671, exon 2 of 5)	exon (NM_013671, exon 2 of 5)	376.0	NM_013671	20656.0	Mm.290876	NM_013671	ENSMUSG00000006818	Sod2	MnSOD|Sod-2	superoxide dismutase 2, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-10301990-3	chr3	10301886	10302086	+	742.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029310)	promoter-TSS (NM_029310)	-803.0	NM_029310	75497.0	Mm.47052	NM_029310	ENSMUSG00000027530	Fabp12	1700008G05Rik	fatty acid binding protein 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-127982227-4	chr8	127982165	127982365	+	981.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	295960.0	NR_105822	102465212.0		NR_105822	ENSMUSG00000099326	Mir21c	Gm28013|mmu-mir-21c	microRNA 21c	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-27106260-2	chr9	27106160	27106360	+	952.9166869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_023277, intron 2 of 8)	intron (NM_023277, intron 2 of 8)	49161.0	NM_023277	83964.0	Mm.28770	NM_023277	ENSMUSG00000031990	Jam3	1110002N23Rik|JAM-3|JAM-C|Jcam3	junction adhesion molecule 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71283834-2	chr8	71283734	71283934	+	594.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001142322, intron 1 of 39)	ID_B1|SINE|B4	11120.0	NM_001142323	17925.0	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-122652568-2	chr2	122652468	122652668	+	762.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11765.0	NR_030547	387165.0		NR_030547	ENSMUSG00000076309	Mir147	Mirn147|mmu-mir-147	microRNA 147	ncRNA	1.75060091246383	1.88972376663403	1.32997591249035	1.29584127847708	1.24620346500918	1.38276012376972	1.61793085484612	0.942899071267597	-1.00658250364321	0.402531891546849	0.888007655328346
Merged-chr5-100550479-3	chr5	100550372	100550572	+	849.833374	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21733.0	NM_139198	231507.0	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	2.07001349569979	2.73325426527372	2.00125813707278	1.17556472360883	1.97759675984984	2.09092585446158	2.73686060071166	1.18004500004633	0.00883145392420065	0.993402599462815	0.998431161219273
Merged-chr10-67202282-3	chr10	67202176	67202376	+	693.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207221, intron 3 of 25)	MLT2D|LTR|ERVL	16526.0	NM_001242396	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-54639625-2	chr14	54639525	54639725	+	746.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_199470, exon 2 of 12)	5' UTR (NM_199470, exon 2 of 12)	1739.0	NM_199470	239096.0	Mm.386871	NM_199470	ENSMUSG00000059674	Cdh24	1700040A22Rik	cadherin-like 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-60290541-4	chr14	60290451	60290651	+	882.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144843, intron 6 of 13)	intron (NM_144843, intron 6 of 13)	25346.0	NM_144843	219135.0	Mm.247007	NM_144843	ENSMUSG00000021987	Mtmr6	4022440C11Rik|AI428804|AU041072	myotubularin related protein 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84638060-2	chr8	84637960	84638160	+	727.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252060, intron 45 of 47)	B3A|SINE|B2	24792.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	1.4406699152735	1.03086909583272	1.80775212961992	1.94701338560555	1.67490803148061	1.62513762516191	1.82282667260465	1.00193377061805	-0.131708005193941	0.913466494812537	0.998431161219273
Merged-chr3-62458550-4	chr3	62458436	62458636	+	963.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081295, intron 12 of 13)	intron (NM_001081295, intron 12 of 13)	48452.0	NM_028136	72162.0	Mm.224233	NM_028136	ENSMUSG00000027770	Dhx36	2810407E23Rik|AI452301|AU022184|Ddx36|mKIAA1488	DEAH (Asp-Glu-Ala-His) box polypeptide 36	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-54620453-1	chr6	54620353	54620553	+	917.0	f0_balb.idr	intron (NM_001001335, intron 6 of 13)	intron (NM_001001335, intron 6 of 13)	17306.0	NM_001001335	231999.0	Mm.35416	NM_001001335	ENSMUSG00000005225	Plekha8	6330400G01|AA517676|BC052360|Fapp-2|Fapp2	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-121669610-2	chr9	121669478	121669678	+	860.458374	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011703, exon 13 of 13)	3' UTR (NM_011703, exon 13 of 13)	26862.0	NM_011703	22354.0	Mm.282007	NM_011703	ENSMUSG00000032528	Vipr1	AV071699|VIP-R1|VPAC1	vasoactive intestinal peptide receptor 1	protein-coding	-0.0543617796587153	-0.294387257662182	0.134723985056533	-0.301327399459948	0.236984116900163	-0.293500474361546	-0.297447159784379	-0.300801182301269	-0.183266244744917	0.941248535114987	1
Merged-chr1-45858232-4	chr1	45858113	45858313	+	964.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	63047.0	NM_028599	73674.0	Mm.270376	NM_028599	ENSMUSG00000025995	Wdr75	1300003A18Rik|2410118I19Rik|C77608	WD repeat domain 75	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-16238162-4	chr9	16238059	16238259	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080814, intron 2 of 24)	Lx10|LINE|L1	140072.0	NM_001080814	270120.0	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT atypical cadherin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171871909-1	chr1	171871809	171872009	+	542.0	f0_balb.idr	intron (NM_001289470, intron 3 of 8)	MER63C|DNA|hAT-Blackjack	32212.0	NM_013489	12523.0	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-23035393-2	chr2	23035293	23035493	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077190, intron 1 of 10)	intron (NM_001077190, intron 1 of 10)	4848.0	NM_001077192	11308.0	Mm.205647	NM_007380	ENSMUSG00000058835	Abi1	E3B1|NAP1|Ssh3bp1|abi-1	abl-interactor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64311106-2	chr5	64311006	64311206	+	789.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001310611, exon 15 of 22)	exon (NM_001310611, exon 15 of 22)	80749.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-50363123-3	chr15	50363025	50363225	+	645.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	525924.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-38028447-1	chr19	38028347	38028547	+	780.0	f1_c57bl6.idr	intron (NM_001302140, intron 1 of 53)	intron (NM_001302140, intron 1 of 53)	15130.0	NM_001099634	226101.0	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding	0.014141184160075	0.0365286259717333	0.870052044267912	0.0236185981766563	0.182925868822969	0.0381557238495324	0.0308757116109103	0.914390504123295	0.285829783945847	0.894784532908611	1
Merged-chr5-6508988-2	chr5	6508888	6509088	+	778.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4A|LINE|L1	-759671.0	NM_027399	70358.0	Mm.85429	NM_027399	ENSMUSG00000015652	Steap1	2410007B19Rik|Prss24|Steap	six transmembrane epithelial antigen of the prostate 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-52073123-2	chr11	52073023	52073223	+	846.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166654, intron 13 of 13)	RSINE1|SINE|B4	-25701.0	NM_019411	19052.0	Mm.260288	NM_019411	ENSMUSG00000020349	Ppp2ca	PP2A|R75353	protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-13874501-2	chr6	13874401	13874601	+	596.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045995, intron 1 of 2)	intron (NR_045995, intron 1 of 2)	2932.0	NR_045995	76311.0	Mm.367129	NR_045995	ENSMUSG00000097616	1110019D14Rik	-	RIKEN cDNA 1110019D14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-51854921-2	chr13	51854821	51855021	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8246.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-85101880-1	chr1	85101780	85101980	+	676.0	f1_balb.idr	intron (NM_213615, intron 1 of 6)	intron (NM_213615, intron 1 of 6)	7973.0	NM_213615	381287.0	Mm.487565	NM_213615	ENSMUSG00000089844	A530032D15Rik	Gm1888	RIKEN cDNA A530032D15Rik gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-66138825-4	chr5	66138737	66138937	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127382, intron 2 of 7)	intron (NM_001127382, intron 2 of 7)	12141.0	NM_001291226	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	4.00360151099378	4.40476471523739	3.2337796522808	4.64197329764234	3.81212722507611	3.80381767641846	4.24216120392121	4.46387430152899	-0.0782095764426068	0.868742559436645	0.998431161219273
Merged-chr10-14531245-4	chr10	14531122	14531322	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001002268, intron 2 of 24)	intron (NM_001002268, intron 2 of 24)	13814.0	NM_001002268	215798.0	Mm.440142	NM_001002268	ENSMUSG00000039116	Adgrg6	1190004A11Rik|AI449247|AW045736|DREG|Gm222|Gpr126	adhesion G protein-coupled receptor G6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-61475715-4	chr10	61475616	61475816	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153542)	promoter-TSS (NM_153542)	-117.0	NM_153542	216011.0	Mm.136116	NM_153542	ENSMUSG00000037151	Lrrc20	BC036304	leucine rich repeat containing 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-63385977-4	chr4	63385868	63386068	+	969.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045514, intron 6 of 21)	intron (NM_001045514, intron 6 of 21)	12272.0	NM_001305432	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-56278416-2	chr8	56278316	56278516	+	647.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-16136.0	NM_008278	15446.0	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-8112086-2	chr10	8111986	8112186	+	615.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-155963.0	NM_138667	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	-0.546788269889671	0.101514345566832	-0.538384471439815	-0.541540539039748	-0.546006965485395	-0.0132890237707241	-0.537482935337208	-0.5409889094789	-0.385487687419026	0.889913942124054	1
Merged-chr13-15173857-2	chr13	15173757	15173957	+	643.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-289866.0	NM_008130	14634.0	Mm.5098	NM_008130	ENSMUSG00000021318	Gli3	AI854843|AU023367|Bph|GLI3-190|GLI3FL|Pdn|Xt|add	GLI-Kruppel family member GLI3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-20501636-2	chr16	20501536	20501736	+	612.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_172265, exon 4 of 16)	exon (NM_172265, exon 4 of 16)	2819.0	NM_172265	224045.0	Mm.233855	NM_172265	ENSMUSG00000003235	Eif2b5	C81315	eukaryotic translation initiation factor 2B, subunit 5 epsilon	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-53449368-4	chr19	53449290	53449490	+	854.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_028427, exon 5 of 10)	non-coding (NR_028427, exon 5 of 10)	15406.0	NR_028427	381232.0	Mm.248624	NR_028427	ENSMUSG00000097636	Mirt1	4833407H14Rik|5430437C04Rik|5830416P10Rik|Gm10758	myocardial infarction associated transcript 1	ncRNA	3.85601354541259	2.55187022568372	2.25348288020533	3.26657658264092	3.78744073392292	3.977393665814	3.48020625892648	4.20486026648244	1.10200861877296	0.0660142811858976	0.384983479748088
Merged-chr11-63131494-4	chr11	63131378	63131578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008885)	promoter-TSS (NM_008885)	21.0	NM_001302255	18858.0	Mm.1237	NM_008885	ENSMUSG00000018217	Pmp22	22kDa|Gas-3|HNPP|TRE002|Tr|trembler	peripheral myelin protein 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-67306999-4	chr5	67306911	67307111	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310629)	promoter-TSS (NM_001310629)	56.0	NM_001310629	109108.0	Mm.234455	NM_178651	ENSMUSG00000029221	Slc30a9	2310024J23Rik|AL024256|GAC63|HUEL|znT-9	solute carrier family 30 (zinc transporter), member 9	protein-coding	6.91076158311953	7.02189902911313	7.54866489129139	6.44437811401355	6.67790795260716	6.83939376951123	7.40238295739153	6.75521360177861	-0.091815675035316	0.691999366692322	0.997344206959699
Merged-chr7-27691306-2	chr7	27691206	27691406	+	728.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001112731, intron 2 of 5)	B3|SINE|B2	1966.0	NM_001112731	112415.0	Mm.145362	NM_198417	ENSMUSG00000057093	Zfp607b	C030039L03Rik	zinc finger protein 607B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-55513470-4	chr13	55513371	55513571	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026131)	promoter-TSS (NM_026131)	-25.0	NM_001114088	67399.0	Mm.275648	NM_026131	ENSMUSG00000021493	Pdlim7	LMP	PDZ and LIM domain 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-63633778-3	chr13	63633692	63633892	+	849.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-60332.0	NM_001328514	19206.0	Mm.228798	NM_008957	ENSMUSG00000021466	Ptch1	A230106A15Rik|Ptc|Ptc1|Ptch|mes|wig	patched 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-40740833-2	chr19	40740733	40740933	+	707.166626	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009848, exon 10 of 10)	3' UTR (NM_009848, exon 10 of 10)	81063.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-25547366-2	chr14	25547266	25547466	+	904.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 3 of 23)	intron (NM_183208, intron 3 of 23)	12927.0	NR_037236	100526533.0		NR_037236	ENSMUSG00000093081	Mir3075	mir-3075|mmu-mir-3075	microRNA 3075	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-60806704-4	chr18	60806603	60806803	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042605, intron 1 of 8)	intron (NM_001042605, intron 1 of 8)	2854.0	NM_010545	16149.0	Mm.439737	NM_010545	ENSMUSG00000024610	Cd74	CLIP|DHLAG|HLADG|Ia-GAMMA|Ii	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	protein-coding	7.56516980189321	7.77842764566333	7.38468071733265	7.297441139513	7.71756912568267	7.88691074515214	7.67040572249695	7.46853728819591	0.182141970426606	0.24139156199573	0.737728541910355
Merged-chr3-89849433-2	chr3	89849333	89849533	+	677.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_172530, exon 3 of 6)	exon (NM_172530, exon 3 of 6)	18063.0	NM_172530	214547.0	Mm.225	NM_172530	ENSMUSG00000046280	She	9430022A14	src homology 2 domain-containing transforming protein E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-75774083-2	chr10	75773983	75774183	+	616.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010027)	promoter-TSS (NM_010027)	-709.0	NM_010027	13202.0	Mm.298947	NM_010027	ENSMUSG00000001666	Ddt	C78655	D-dopachrome tautomerase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80313809-3	chr10	80313715	80313915	+	967.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011789, exon 14 of 14)	exon (NM_011789, exon 14 of 14)	6733.0	NM_025521	66374.0	Mm.383824	NM_025521	ENSMUSG00000020133	2310011J03Rik	AI452186|AW545358	RIKEN cDNA 2310011J03 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-46544523-2	chr4	46544423	46544623	+	934.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164804, intron 6 of 11)	B3|SINE|B2	-8382.0	NM_029077	74735.0	Mm.240252	NM_029077	ENSMUSG00000039853	Trim14	5830400N10Rik|pub	tripartite motif-containing 14	protein-coding	2.09332704735143	0.920409182134047	0.903466666662524	1.65762120909607	1.57830190329944	0.92417395496375	1.60678934211525	1.55256292282837	-0.229176440036969	0.865171897386102	0.998431161219273
Merged-chr1-191138557-4	chr1	191138430	191138630	+	886.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26287.0	NM_001109759	619288.0	Mm.61148	NM_001109759	ENSMUSG00000091017	Fam71a	4933417M04Rik|GARI-L4	family with sequence similarity 71, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152534858-2	chr1	152534758	152534958	+	695.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 12 of 17)	L2b|LINE|L2	90359.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100343224-4	chr11	100343082	100343282	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR49|LTR|ERVK	8775.0	NM_010257	14459.0	Mm.4767	NM_010257	ENSMUSG00000017165	Gast	GAS	gastrin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-121648797-2	chr14	121648697	121648897	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081039, intron 9 of 53)	intron (NM_001081039, intron 9 of 53)	49620.0	NM_001347596	105445.0	Mm.378591	NM_134074	ENSMUSG00000025558	Dock9	AA959601|AW538057|B230309H04Rik|D14Wsu89e|Zizimin1|mKIAA1058	dedicator of cytokinesis 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100526104-2	chr11	100526004	100526204	+	681.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_134037, intron 1 of 27)	intron (NM_134037, intron 1 of 27)	1896.0	NM_134037	104112.0	Mm.282039	NM_134037	ENSMUSG00000020917	Acly	A730098H14Rik|AW538652	ATP citrate lyase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27717825-2	chr2	27717725	27717925	+	776.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290482, intron 1 of 9)	intron (NM_001290482, intron 1 of 9)	7242.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-132996474-2	chr7	132996374	132996574	+	574.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001170744, intron 3 of 8)	intron (NM_001170744, intron 3 of 8)	18773.0	NM_001170744	13017.0	Mm.246240	NM_009980	ENSMUSG00000030970	Ctbp2	AA407280|D7Ertd45e|Gtrgeo6|Ribeye	C-terminal binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-113378507-4	chr7	113378398	113378598	+	936.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9159.0	NM_133700	68815.0	Mm.238034	NM_133700	ENSMUSG00000038187	Btbd10	1110056N09Rik|Gmrp1	BTB (POZ) domain containing 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85375651-2	chr12	85375551	85375751	+	834.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026775)	promoter-TSS (NM_026775)	-934.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-32932372-4	chr14	32932276	32932476	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178791, intron 7 of 7)	intron (NM_178791, intron 7 of 7)	-59006.0	NM_001146021	67580.0	Mm.46115	NM_026253	ENSMUSG00000041673	Lrrc18	4930442L21Rik|MTLR1	leucine rich repeat containing 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-22701143-3	chr10	22701046	22701246	+	765.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178934, intron 4 of 4)	intron (NM_178934, intron 4 of 4)	28286.0	NR_106123	102465768.0		NR_106123	ENSMUSG00000098714	Mir7663	Gm28034|mmu-mir-7663	microRNA 7663	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19882498-2	chr7	19882398	19882598	+	657.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177036, intron 4 of 6)	intron (NM_177036, intron 4 of 6)	5467.0	NM_177036	319930.0	Mm.215839	NM_177036	ENSMUSG00000049848	Ceacam19	C130022P09Rik|CEAL1	carcinoembryonic antigen-related cell adhesion molecule 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-16187283-1	chr2	16187183	16187383	+	542.0	f1_balb.idr	intron (NM_001310455, intron 35 of 38)	intron (NM_001310455, intron 35 of 38)	-169021.0	NM_026162	67448.0	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-96999124-4	chr7	96999017	96999217	+	830.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153591, intron 5 of 13)	L1Md_F2|LINE|L1	47590.0	NM_153591	244141.0	Mm.274864	NM_153591	ENSMUSG00000018995	Nars2	AI875199	asparaginyl-tRNA synthetase 2 (mitochondrial)(putative)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131084065-1	chr1	131083965	131084165	+	1000.0	f1_balb.idr	intron (NM_008551, intron 1 of 9)	intron (NM_008551, intron 1 of 9)	13778.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	0.296861626451408	0.0465832791312033	0.711840487961279	0.0366104744647559	0.177365099943544	0.0478514654763595	0.621413279606769	0.0373696793901055	-0.416345568219265	0.841385296495784	1
Merged-chr7-96976208-4	chr7	96976113	96976313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153591, intron 5 of 13)	ORR1D2|LTR|ERVL-MaLR	24686.0	NM_153591	244141.0	Mm.274864	NM_153591	ENSMUSG00000018995	Nars2	AI875199	asparaginyl-tRNA synthetase 2 (mitochondrial)(putative)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99128304-2	chr15	99128204	99128404	+	579.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_139140, intron 1 of 12)	intron (NM_139140, intron 1 of 12)	1459.0	NM_139140	72572.0	Mm.276650	NM_139140	ENSMUSG00000051934	Spats2	2700012F11Rik|59kDa|Scr59|p59	spermatogenesis associated, serine-rich 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-101354615-4	chr4	101354515	101354715	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040640, intron 1 of 3)	intron (NR_040640, intron 1 of 3)	832.0	NR_040640	68400.0	Mm.272098	NR_040640	ENSMUSG00000087361	0610043K17Rik	-	RIKEN cDNA 0610043K17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-108985372-2	chr9	108985272	108985472	+	547.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145077)	promoter-TSS (NM_145077)	-791.0	NM_145077	171530.0	Mm.388865	NM_145077	ENSMUSG00000049699	Ucn2	Ucn II|Ucn-2|ucn-II	urocortin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-58188661-4	chr13	58188577	58188777	+	635.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026842, intron 6 of 10)	MTE-int|LTR|ERVL-MaLR	26976.0	NM_152234	56085.0	Mm.182053	NM_026842	ENSMUSG00000005312	Ubqln1	1110046H03Rik|1810030E05Rik|AU019746|C77538|D13Ertd372e|Da41|Dsk2|Plic-1|Plic1|Xdrp1	ubiquilin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-17842259-4	chr5	17842154	17842354	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159558, intron 1 of 15)	intron (NM_001159558, intron 1 of 15)	-6358.0	NM_007643	12491.0	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 molecule	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-34006898-2	chr13	34006798	34006998	+	992.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009068, intron 1 of 10)	intron (NM_009068, intron 1 of 10)	4024.0	NM_009068	19766.0	Mm.374799	NM_009068	ENSMUSG00000021408	Ripk1	D330015H01Rik|RIP|RIP-1|Rinp|Rip1	receptor (TNFRSF)-interacting serine-threonine kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-63811976-4	chr5	63811886	63812086	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029554)	promoter-TSS (NM_029554)	-509.0	NM_029554	76261.0	Mm.38143	NM_029554	ENSMUSG00000060512	0610040J01Rik	AI662686	RIKEN cDNA 0610040J01 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-93046225-4	chr2	93046163	93046363	+	828.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177536)	promoter-TSS (NM_001177536)	-119.0	NM_001177536	100042784.0	Mm.102816	NM_001177536	ENSMUSG00000075028	Prdm11	8030443D09Rik|AA163972|Gm707	PR domain containing 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44510227-4	chr9	44510123	44510323	+	948.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_030256, exon 9 of 9)	3' UTR (NM_030256, exon 9 of 9)	11087.0	NM_030256	80288.0	Mm.370270	NM_030256	ENSMUSG00000063382	Bcl9l	B9L|BC003321|BCL9-2|DLNB11	B cell CLL/lymphoma 9-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-8114921-2	chr14	8114821	8115021	+	671.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360314, intron 1 of 19)	intron (NM_001360314, intron 1 of 19)	16710.0	NM_001360315	218699.0	Mm.29515	NM_145458	ENSMUSG00000033885	Pxk	C230080L11Rik|D14Ertd813e|Monaka|Slob	PX domain containing serine/threonine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-65490015-4	chr5	65489913	65490113	+	997.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133697, intron 1 of 4)	intron (NM_133697, intron 1 of 4)	2822.0	NM_133697	68552.0	Mm.10709	NM_133697	ENSMUSG00000037822	Smim14	1110003E01Rik|1700127H04Rik|5430439C17Rik|MAd4	small integral membrane protein 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-35469169-3	chr8	35469064	35469264	+	898.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026067, exon 7 of 7)	exon (NM_026067, exon 7 of 7)	26369.0	NM_026067	67276.0	Mm.207534	NM_026067	ENSMUSG00000031527	Eri1	3'hexo|3110010F15Rik|Thex1|eri-1	exoribonuclease 1	protein-coding	2.91433491778933	3.18200731832886	2.69458669821319	1.57908653997358	3.5296725394768	4.11118947335883	3.38488937080318	3.92023477108674	1.69866118828719	0.00850759707998224	0.0970286594730294
Merged-chr15-101318318-4	chr15	101318201	101318401	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25089.0	NR_033803	77717.0	Mm.391998	NR_033803	ENSMUSG00000075408	6030408B16Rik	AI225877	RIKEN cDNA 6030408B16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-128333471-2	chr7	128333371	128333571	+	953.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Rod|LINE|L1	-35340.0	NM_145590	233913.0	Mm.220880	NM_145590	ENSMUSG00000030780	BC017158	-	cDNA sequence BC017158	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-25391511-2	chr15	25391411	25391611	+	638.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027395, intron 1 of 1)	intron (NM_027395, intron 1 of 1)	22253.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-114644168-7	chr6	114644064	114644264	+	910.464294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028835, intron 1 of 18)	intron (NM_028835, intron 1 of 18)	1067.0	NM_001253718	74244.0	Mm.275332	NM_028835	ENSMUSG00000030314	Atg7	1810013K23Rik|Agp7|Apg7l|Atg7l|Gm21553	autophagy related 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116127358-2	chr11	116127258	116127458	+	601.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178802, intron 4 of 5)	intron (NM_178802, intron 4 of 5)	3770.0	NM_178802	338364.0	Mm.439976	NM_178802	ENSMUSG00000054517	Trim65	4732463G12Rik	tripartite motif-containing 65	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-67512998-4	chr3	67512900	67513100	+	963.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164763, intron 1 of 5)	intron (NM_001164763, intron 1 of 5)	2523.0	NM_001164763	109222.0	Mm.38002	NM_001164763	ENSMUSG00000049404	Rarres1	5430417P09Rik|AI662122	retinoic acid receptor responder (tazarotene induced) 1	protein-coding	-1.04972294872659	-0.842190099534501	-0.459480222790889	-1.04612043450792	-1.04918716495468	-1.026801826266	-1.03858346348168	-1.04574123317769	-2.85191801975984	0.360205146402349	1
Merged-chr1-173941909-3	chr1	173941809	173942009	+	803.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302649, intron 2 of 9)	intron (NM_001302649, intron 2 of 9)	583.0	NM_001302649	15950.0	Mm.463437	NM_008328	ENSMUSG00000039997	Ifi203	Ifi203a|Ifi203b|Mndal	interferon activated gene 203	protein-coding	1.82371863489456	1.34779032356681	0.520987487715564	1.88878514892476	0.488522257839506	0.541272597773858	0.524697775980511	0.510121190211319	-5.05924129642599	0.00246999099924454	0.039367252616247
Merged-chr18-66518439-2	chr18	66518339	66518539	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	14261.0	NR_040528	100503565.0	Mm.98256	NR_040528		Gm9926	-	predicted gene 9926	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-73491721-4	chr2	73491639	73491839	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	-5986.0	NM_001289723	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-31700680-2	chr5	31700580	31700780	+	889.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_181280, intron 1 of 12)	B4A|SINE|B4	2630.0	NM_144541	107976.0	Mm.482126	NM_144541	ENSMUSG00000052139	Babam2	6030405P19Rik|AI429776|B830038C02Rik|Bre	BRISC and BRCA1 A complex member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-122981077-2	chr14	122980977	122981177	+	652.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360598, intron 1 of 18)	intron (NM_001360598, intron 1 of 18)	2065.0	NM_001360599	70551.0	Mm.271988	NM_028651	ENSMUSG00000041594	Tmtc4	4930403J22Rik|5730419O14Rik	transmembrane and tetratricopeptide repeat containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-45959818-4	chr9	45959730	45959930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4581.0	NM_172257	214597.0	Mm.379345	NM_172257	ENSMUSG00000034908	Sidt2	B930096O19|BC023957|CGI-40	SID1 transmembrane family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-77931829-4	chr15	77931731	77931931	+	956.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2837.0	NM_019913	56551.0	Mm.291917	NM_019913	ENSMUSG00000005354	Txn2	2510006J11Rik|AI788873|Trx2	thioredoxin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-83038707-2	chr15	83038607	83038807	+	689.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur3|SINE|Alu	-5310.0	NM_001271411	74039.0	Mm.32584	NM_028728	ENSMUSG00000058099	Nfam1	4921501M20Rik|Cnaip	Nfat activating molecule with ITAM motif 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-11031934-4	chr4	11031850	11032050	+	741.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24331.0	NM_175175	71801.0	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-106760194-4	chr7	106760109	106760309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6823.0	NM_146602	258595.0	Mm.377585	NM_146602	ENSMUSG00000059087	Olfr698	MOR283-3	olfactory receptor 698	protein-coding	3.80531812330159	4.06006691413268	3.01572885748081	4.64067702313162	4.39845870186098	3.51167897749401	3.04157895340068	3.37846237714286	-0.431067558465326	0.444702561188679	0.912265842646861
Merged-chr5-103802699-3	chr5	103802596	103802796	+	778.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133919, intron 3 of 19)	intron (NM_133919, intron 3 of 19)	48123.0	NM_001080798	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-42998880-2	chr4	42998780	42998980	+	774.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009503, intron 1 of 16)	PB1D9|SINE|Alu	1627.0	NM_009503	269523.0	Mm.245976	NM_009503	ENSMUSG00000028452	Vcp	3110001E05|CDC48|p97|p97/VCP	valosin containing protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-89125516-2	chr2	89125416	89125616	+	572.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_001011860, exon 1 of 1)	exon (NM_001011860, exon 1 of 1)	213.0	NM_001011860	258177.0	Mm.377369	NM_001011860	ENSMUSG00000075101	Olfr1222	MOR233-14	olfactory receptor 1222	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-29249898-2	chr6	29249798	29249998	+	654.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22590.0	NM_001190461	69573.0	Mm.45161	NM_023516	ENSMUSG00000043421	Hilpda	2310016C08Rik|AW049004|Hig2	hypoxia inducible lipid droplet associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-51195920-2	chr3	51195820	51196020	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20B5_MM|LTR|ERVK	-28527.0	NM_009834	12457.0	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101503996-4	chr7	101503873	101504073	+	838.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001143849, exon 15 of 30)	exon (NM_001143849, exon 15 of 30)	28597.0	NR_029791	387157.0		NR_029791	ENSMUSG00000065446	Mir139	Mirn139|mir-139|mmu-mir-139	microRNA 139	ncRNA	1.25691000759897	1.54198628811009	1.22287054635616	0.855111169850554	1.47237793282642	1.27223226741112	1.60831833709623	1.0412977966948	0.504819238632467	0.691390309174959	0.996871606651317
Merged-chr8-94917613-4	chr8	94917498	94917698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033533, intron 1 of 8)	CpG	500.0	NM_001033533	234582.0	Mm.277871	NM_001033533	ENSMUSG00000063605	Ccdc102a	BC027663|Gm586	coiled-coil domain containing 102A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-60668488-3	chr1	60668382	60668582	+	842.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-77906.0	NM_007642	12487.0	Mm.255003	NM_007642	ENSMUSG00000026012	Cd28	-	CD28 antigen	protein-coding	0.101275934120151	0.12180827678073	0.115117245655552	0.10993174563483	0.86628282396155	0.775725828533165	0.11659585793812	0.564972889487321	4.22180719849516	0.0419413162963779	1
Merged-chr2-9889588-6	chr2	9889388	9889588	+	772.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040511)	promoter-TSS (NR_040511)	52.0	NR_040511	77682.0	Mm.488621	NR_040511	ENSMUSG00000079602	9230102O04Rik	-	RIKEN cDNA 9230102O04 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-119110298-2	chr12	119110198	119110398	+	841.1666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	127978.0	NM_177290	320910.0	Mm.217000	NM_177290	ENSMUSG00000025321	Itgb8	4832412O06Rik	integrin beta 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-98831026-1	chr13	98830926	98831126	+	666.0	f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-15577.0	NM_172591	218503.0	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-148534612-4	chr6	148534555	148534755	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	79654.0	NR_045867	622319.0	Mm.491049	NM_001037912	ENSMUSG00000070995	Gm6313	EG622319	predicted gene 6313	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80636866-2	chr7	80636766	80636966	+	671.666687	f1_balb.idr|f1_c57bl6.idr	intron (NR_040343, intron 2 of 4)	intron (NR_040343, intron 2 of 4)	849.0	NR_040343	100504375.0	Mm.322881	NR_040343	ENSMUSG00000084821	Gm15880	-	predicted gene 15880	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-82022053-2	chr11	82021953	82022153	+	914.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13524.0	NM_011333	20296.0	Mm.290320	NM_011333	ENSMUSG00000035385	Ccl2	AI323594|HC11|JE|MCAF|MCP-1|MCP1|SMC-CF|Scya2|Sigje	chemokine (C-C motif) ligand 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-29488707-3	chr17	29488606	29488806	+	966.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2339.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-49935918-4	chr17	49935719	49935919	+	843.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	254678.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-101980412-3	chr12	101980306	101980506	+	605.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016856, intron 1 of 14)	RMER4B|LTR|ERVK	4432.0	NM_016856	51786.0	Mm.716	NM_016856	ENSMUSG00000041781	Cpsf2	100kDa|2610024B04Rik|AI662483|Cpsf|MCPSF|mKIAA1367	cleavage and polyadenylation specific factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106613221-4	chr11	106613107	106613307	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198292)	promoter-TSS (NM_198292)	-277.0	NM_198292	21763.0	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-137914288-2	chr4	137914195	137914395	+	735.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_199307, intron 3 of 19)	intron (NM_199307, intron 3 of 19)	52058.0	NM_199307	230857.0	Mm.401062	NM_199307	ENSMUSG00000057530	Ece1	AW322500|ECE-1|ECE-1a|ECE-1b|ECE-1d	endothelin converting enzyme 1	protein-coding	-0.223060707267372	-0.204941219003585	-0.210832735833444	0.121416593036626	-0.221917476506011	-0.203618947655671	-0.00880459982053475	0.813782886386643	2.29616804905419	0.326971334271396	1
Merged-chr9-7871871-4	chr9	7871771	7871971	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007464, intron 1 of 8)	intron (NM_007464, intron 1 of 8)	1299.0	NM_007464	11796.0	Mm.2026	NM_007464	ENSMUSG00000032000	Birc3	AW107670|Api1|Api2|Birc2|C-IAP2|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF49|cIAP-1|cIAP-2|cIAP1|cIAP2	baculoviral IAP repeat-containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-51073295-3	chr2	51073195	51073395	+	776.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	75816.0	NM_028810	74194.0	Mm.46497	NM_028810	ENSMUSG00000017144	Rnd3	2610017M01Rik|AI661404|Arhe|Rhoe	Rho family GTPase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-143702426-2	chr1	143702326	143702526	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145991, intron 1 of 16)	intron (NM_145991, intron 1 of 16)	467.0	NM_145991	214498.0	Mm.156727	NM_145991	ENSMUSG00000026361	Cdc73	8430414L16Rik|C130030P16Rik|C81219|Hrpt2	cell division cycle 73, Paf1/RNA polymerase II complex component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120725352-3	chr8	120725208	120725408	+	743.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11050.0	NM_008320	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-80020589-3	chr8	80020483	80020683	+	801.93335	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020259, intron 4 of 12)	intron (NM_020259, intron 4 of 12)	37425.0	NM_020259	15245.0	Mm.254493	NM_020259	ENSMUSG00000064325	Hhip	Hhip1	Hedgehog-interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-126816202-2	chr4	126816102	126816302	+	580.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001035525, intron 4 of 23)	intron (NM_001035525, intron 4 of 23)	62432.0	NM_001035526	100317.0	Mm.206206	NM_133886	ENSMUSG00000028830	AU040320	A730047D20Rik|AAVR|Kiaa0319l	expressed sequence AU040320	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-106767425-1	chr5	106767325	106767525	+	798.0	f1_c57bl6.idr	Intergenic	Intergenic	-70595.0	NM_026856	52397.0	Mm.249474	NM_026856	ENSMUSG00000049606	Zfp644	1110068L01Rik|AA408882|BM-005|D5Ertd689e|Zep-2	zinc finger protein 644	protein-coding	-0.37790657608628	-0.7425209476875	-0.745752534966227	-0.748241895791257	-0.75175369388296	-0.741791734322997	-0.166202711934189	-0.747807260520129	0.813296986456869	0.785019466223198	1
Merged-chr11-118297379-2	chr11	118297279	118297479	+	786.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	-7135.0	NM_001033528	72344.0	Mm.232293	NM_001033528	ENSMUSG00000033909	Usp36	2700002L06Rik|mKIAA1453	ubiquitin specific peptidase 36	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-49400366-2	chr17	49400266	49400466	+	797.083374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27998.0	NM_028464	56738.0	Mm.22256	NM_020042	ENSMUSG00000064120	Mocs1	3110045D15Rik|AI043170|AW536397	molybdenum cofactor synthesis 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-84328659-3	chr17	84328561	84328761	+	951.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183021, intron 28 of 37)	intron (NM_183021, intron 28 of 37)	137547.0	NM_183021	240174.0	Mm.246767	NM_177826	ENSMUSG00000024251	Thada	6530405K19|A930021O22|AU019899|BC052885|GITA	thyroid adenoma associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-47225524-4	chr13	47225414	47225614	+	922.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146042, intron 3 of 7)	intron (NM_146042, intron 3 of 7)	31511.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	2.20065943105759	1.87373547854809	1.93221288093633	1.05624496667945	1.54854819887668	1.56385893318305	1.07917788127048	2.34081845777165	-0.29442089922123	0.801265738608543	0.998431161219273
Merged-chr3-122577627-4	chr3	122577536	122577736	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114665, intron 2 of 15)	Lx8b|LINE|L1	-35955.0	NR_106117	102465764.0		NR_106117	ENSMUSG00000104773	Mir7657	mmu-mir-7657	microRNA 7657	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-122593521-4	chr6	122593425	122593625	+	984.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031159, intron 3 of 7)	intron (NM_031159, intron 3 of 7)	8919.0	NM_031159	11810.0	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-32333357-3	chr16	32333252	32333452	+	792.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177633, intron 1 of 10)	UCON11|Unknown|Unknown	1100.0	NM_177633	224111.0	Mm.31275	NM_177633	ENSMUSG00000053774	Ubxn7	A630090P18|AI196514|Ubxd7|mKIAA0794	UBX domain protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-5508440-2	chr2	5508340	5508540	+	959.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290375, intron 2 of 10)	B4|SINE|B4	129050.0	NR_030601	100124465.0		NR_030601	ENSMUSG00000078031	Mir466d	Mirn466d	microRNA 466d	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81845276-1	chr15	81845176	81845376	+	563.0	f1_c57bl6.idr	Intergenic	Intergenic	13050.0	NM_020507	57259.0	Mm.323595	NM_020507	ENSMUSG00000048546	Tob2	2900090N22Rik|4930545K18Rik|AV071822|mKIAA1663	transducer of ERBB2, 2	protein-coding	1.83872821446682	0.993916457879472	1.20138004558434	2.18972014823222	0.93766383335961	1.6147705647068	1.55846322384036	1.86397905267577	-0.370801852451406	0.766688914755639	0.998431161219273
Merged-chr2-10010455-3	chr2	10010371	10010571	+	942.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027748, intron 2 of 6)	intron (NM_027748, intron 2 of 6)	38138.0	NM_027748	209361.0	Mm.86343	NM_027748	ENSMUSG00000025782	Taf3	140kDa|4933439M23Rik|AW539625|TAF140|TAFII-140|TAFII140|mTAFII140	TATA-box binding protein associated factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-93445588-4	chr1	93445479	93445679	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133808, intron 1 of 27)	CpG	122.0	NM_001301364	110611.0	Mm.30012	NM_133808	ENSMUSG00000034088	Hdlbp	1110005P14Rik|AA960365|AI118566|D1Ertd101e	high density lipoprotein (HDL) binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-8868088-4	chr17	8867980	8868180	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347321, intron 1 of 21)	intron (NM_001347321, intron 1 of 21)	18095.0	NM_001347321	23984.0	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-78015561-2	chr18	78015461	78015661	+	611.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001195633, intron 32 of 43)	intron (NM_001195633, intron 32 of 43)	41707.0	NM_001101038	620235.0	Mm.35607	NM_001101038	ENSMUSG00000091055	Siglec15	Cd33l3|EG620235|SIGLEC-I	sialic acid binding Ig-like lectin 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-34327117-1	chr18	34327017	34327217	+	556.0	f1_balb.idr	Intergenic	Intergenic	-4028.0	NM_025527	66384.0	Mm.29452	NM_025527	ENSMUSG00000014504	Srp19	2310020D23Rik	signal recognition particle 19	protein-coding	0.222808781092415	0.601808558031448	0.697271964174369	0.231363429087207	0.613184420406597	0.244645229729247	0.237969772416783	0.965614802210172	0.621385207241733	0.74965996170589	1
Merged-chr12-82257907-2	chr12	82257807	82258007	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001167983, intron 2 of 23)	intron (NM_001167983, intron 2 of 23)	-53442.0	NM_172579	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65200790-4	chr9	65200693	65200893	+	995.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-13897.0	NM_177460	214424.0	Mm.31129	NM_177460	ENSMUSG00000032392	Parp16	ARTD15|BC055447|C79952|PARP-16	poly (ADP-ribose) polymerase family, member 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-61071945-2	chr18	61071845	61072045	+	691.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_008809, intron 11 of 22)	intron (NM_008809, intron 11 of 22)	26795.0	NM_008809	18596.0	Mm.4146	NM_008809	ENSMUSG00000024620	Pdgfrb	AI528809|CD140b|PDGFR-1|Pdgfr	platelet derived growth factor receptor, beta polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-88733332-4	chr15	88733234	88733434	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033274, intron 1 of 12)	intron (NM_001033274, intron 1 of 12)	885.0	NM_001033274	223770.0	Mm.254438	NM_001033274	ENSMUSG00000022387	Brd1	1110059H06Rik|AI316859|mKIAA4191	bromodomain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-91185152-3	chr10	91185044	91185244	+	907.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-13525.0	NM_001080130	21917.0	Mm.159684	NM_011605	ENSMUSG00000019961	Tmpo	5630400D24Rik|AI195756|AI606875|AW214352|AW547477|LAP2|TP	thymopoietin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-3661038-4	chr8	3660952	3661152	+	871.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-4710.0	NM_026985	69189.0	Mm.175176	NM_026985	ENSMUSG00000013974	Mcemp1	1810033B17Rik	mast cell expressed membrane protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-28664059-3	chr19	28663948	28664148	+	588.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175459, intron 2 of 10)	intron (NM_175459, intron 2 of 10)	-14176.0	NR_045330	320176.0	Mm.406716	NR_045330	ENSMUSG00000097735	D930032P07Rik	-	RIKEN cDNA D930032P07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-3645952-2	chr2	3645852	3646052	+	726.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-67506.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-155817166-2	chr2	155817072	155817272	+	779.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_015528)	TTS (NR_015528)	2031.0	NR_015528	613262.0	Mm.330707	NR_015528	ENSMUSG00000074649	BC029722	-	cDNA sequence BC029722	ncRNA	0.140450036819849	0.0327623217614456	0.0289603168581588	0.389903437831704	0.43209050280465	0.0336256968517644	0.0297949246767537	0.486229624044696	0.965516285420515	0.651715961301002	1
Merged-chr5-113772734-4	chr5	113772644	113772844	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016926)	promoter-TSS (NM_016926)	-68.0	NM_025526	66383.0	Mm.29497	NM_025526	ENSMUSG00000025825	Iscu	2310020H20Rik|AA407971|Nifu|Nifun	iron-sulfur cluster assembly enzyme	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-31350128-4	chr15	31350035	31350235	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027496, intron 1 of 3)	intron (NM_027496, intron 1 of 3)	17624.0	NM_001357923	67434.0	Mm.102470	NM_026153	ENSMUSG00000022237	Ankrd33b	0610012A05Rik|3021401C12Rik|5730557B15Rik	ankyrin repeat domain 33B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67585089-4	chr10	67584991	67585191	+	906.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13132.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44364775-1	chr9	44364675	44364875	+	734.0	f1_balb.idr	Intergenic	B3|SINE|B2	-3105.0	NM_027889	71732.0	Mm.295013	NM_027889	ENSMUSG00000032127	Vps11	1200011A11Rik	VPS11, CORVET/HOPS core subunit	protein-coding	0.853675025850214	0.474939226829232	0.466071466862783	0.459189011447091	1.14861079472977	1.25118357052088	0.468032348317582	1.03785517072299	2.53001897691109	0.156688270375446	1
Merged-chr7-19504706-1	chr7	19504606	19504806	+	541.0	f1_c57bl6.idr	Intergenic	RMER13B|LTR|ERVK	3625.0	NM_177692	232946.0	Mm.64557	NM_177692	ENSMUSG00000057667	Bloc1s3	BC043666|Blos3|E230011O18|rp	biogenesis of lysosomal organelles complex-1, subunit 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139705331-2	chr5	139705221	139705421	+	800.0	f0_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	31012.0	NM_174850	231830.0	Mm.240510	NM_174850	ENSMUSG00000036718	Micall2	A930021H16Rik|JRAB|MICAL-L2|mFLJ00139	MICAL-like 2	protein-coding	3.14544506182695	3.3187855247718	2.69614305139398	1.91327149467656	2.39749384176735	2.81203197914773	1.76117178821462	2.52169972261355	-0.882241406128599	0.268960442680991	0.772376110887155
Merged-chr12-85470846-2	chr12	85470773	85470973	+	747.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-3017.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-84221151-2	chr12	84221051	84221251	+	654.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur3|SINE|Alu	-2270.0	NM_001163501	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-32939379-3	chr14	32939267	32939467	+	864.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001361602, exon 6 of 6)	3' UTR (NM_001361602, exon 6 of 6)	-52015.0	NM_001146021	67580.0	Mm.46115	NM_026253	ENSMUSG00000041673	Lrrc18	4930442L21Rik|MTLR1	leucine rich repeat containing 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-50087931-4	chr18	50087828	50088028	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134131, intron 1 of 1)	intron (NM_134131, intron 1 of 1)	-34266.0	NR_155293	102635912.0	Mm.440627	NR_155293		C030005K06Rik	-	RIKEN cDNA C030005K06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-140624794-4	chr6	140624687	140624887	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001309437)	promoter-TSS (NM_001309437)	-122.0	NM_001309437	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191085104-4	chr1	191084919	191085119	+	971.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_198654)	TTS (NM_198654)	-13395.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69406058-2	chr11	69405958	69406158	+	926.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001017426, exon 11 of 23)	exon (NM_001017426, exon 11 of 23)	7617.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-118360963-1	chr4	118360863	118361063	+	549.0	f0_balb.idr	intron (NM_026601, intron 3 of 8)	intron (NM_026601, intron 3 of 8)	964.0	NR_003946	68180.0	Mm.193212	NM_026601	ENSMUSG00000006395	Hyi	2700033B16Rik|6430559E15Rik|HT036	hydroxypyruvate isomerase (putative)	protein-coding	1.49666458479412	1.51065131012779	1.05780703334957	1.57424031298817	1.92383119774214	2.07180060596054	1.28802446332962	2.1139533676488	1.51382522830844	0.176356307349852	0.646092365840656
Merged-chr2-57237242-2	chr2	57237142	57237342	+	865.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145820)	promoter-TSS (NM_001145820)	-436.0	NM_001145820	14571.0	Mm.3711	NM_010274	ENSMUSG00000026827	Gpd2	AA408484|AI448216|AU021455|AW494132|GPDH|Gdm1|Gpd-m|Gpdh-m|TISP38	glycerol phosphate dehydrogenase 2, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-84105380-2	chr17	84105280	84105480	+	567.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26720.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-117134039-4	chr4	117133937	117134137	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013807)	promoter-TSS (NM_013807)	-74.0	NM_001313916	12795.0	Mm.259022	NM_013807	ENSMUSG00000028680	Plk3	Cnk|Fnk|PLK-3|PRK	polo like kinase 3	protein-coding	7.05924278749021	7.42813249045592	7.54072906197859	7.00469283804812	7.26260593777157	7.57180621725412	7.74863827362521	7.21430926652182	0.199012527203768	0.269374579148988	0.772801970187325
Merged-chr15-94544484-3	chr15	94544377	94544577	+	701.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172437)	promoter-TSS (NM_172437)	817.0	NM_029926	266632.0	Mm.422858	NM_029926	ENSMUSG00000059883	Irak4	8430405M07Rik|9330209D03Rik|IRAK-4|NY-REN-64	interleukin-1 receptor-associated kinase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55098197-4	chr14	55098086	55098286	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001303502)	TTS (NM_001303502)	3402.0	NM_153083	105663.0	Mm.319204	NM_153083	ENSMUSG00000045691	Thtpa	AW122966	thiamine triphosphatase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-23307782-2	chr11	23307682	23307882	+	693.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001190401, intron 1 of 79)	intron (NM_001190401, intron 1 of 79)	887.0	NM_001190401	17847.0	Mm.119155	NM_001190401	ENSMUSG00000056342	Usp34	A530081C03Rik|Murr2	ubiquitin specific peptidase 34	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105346203-2	chr8	105346103	105346303	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177699, intron 1 of 21)	intron (NM_177699, intron 1 of 21)	1767.0	NM_177699	234686.0	Mm.87724	NM_177699	ENSMUSG00000014778	Fhod1	BC017144|FHOS|FHOS1	formin homology 2 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-65683128-2	chr18	65683055	65683255	+	700.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361052, intron 7 of 8)	intron (NM_001361052, intron 7 of 8)	-15113.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-68709468-4	chr3	68709359	68709559	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18035.0	NM_008351	16159.0	Mm.103783	NM_008351	ENSMUSG00000027776	Il12a	IL-12p35|Il-12a|Ll12a|p35	interleukin 12a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-18591789-2	chr16	18591689	18591889	+	675.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1118.0	NM_001285472	21380.0	Mm.295194	NM_011532	ENSMUSG00000009097	Tbx1	-	T-box 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-6624549-4	chr15	6624441	6624641	+	999.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155272, intron 3 of 6)	intron (NR_155272, intron 3 of 6)	29762.0	NR_155272	102632231.0	Mm.444780	NR_155272		LOC102632231	-	uncharacterized LOC102632231	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-152122820-3	chr3	152122710	152122910	+	961.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016867, intron 3 of 5)	ORR1C1|LTR|ERVL-MaLR	43090.0	NM_016867	54120.0	Mm.97	NM_016867	ENSMUSG00000039131	Gipc2	2200002N01Rik|AU021850|Semcap2	GIPC PDZ domain containing family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-70586772-1	chr16	70586672	70586872	+	823.0	f0_balb.idr	Intergenic	Tigger6a|DNA|TcMar-Tigger	-29653.0	NR_040474	52645.0	Mm.188475	NR_040474		D16Ertd519e	-	DNA segment, Chr 16, ERATO Doi 519, expressed	ncRNA	0.1694832867738	0.190560335467927	0.775456821571423	0.178365371809389	0.572348851427427	0.95095359207652	0.374560992669354	0.179296770224255	1.20400452076525	0.542088402101469	1
Merged-chr11-34771393-4	chr11	34771285	34771485	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033374, intron 1 of 51)	intron (NM_033374, intron 1 of 51)	12520.0	NM_033374	94176.0	Mm.380679	NM_033374	ENSMUSG00000020143	Dock2	AI662014|AW122239|CED-5|Hch|MBC	dedicator of cyto-kinesis 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-49173253-4	chr13	49173167	49173367	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB3|LINE|L1	-14280.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-60822020-2	chr5	60821920	60822120	+	872.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-836018.0	NR_040682	71057.0	Mm.50817	NR_040682	ENSMUSG00000106013	4933402J10Rik	-	RIKEN cDNA 4933402J10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81621043-2	chr10	81620943	81621143	+	662.75	f1_balb.idr|f1_c57bl6.idr	TTS (NM_181586)	TTS (NM_181586)	6279.0	NM_001163430	50721.0	Mm.25643	NM_181586	ENSMUSG00000034748	Sirt6	2810449N18Rik|AI043036|Sir2l6	sirtuin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-47043390-4	chr13	47043264	47043464	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172262)	promoter-TSS (NM_172262)	-135.0	NM_172262	218214.0	Mm.31259	NM_172262	ENSMUSG00000038080	Kdm1b	4632428N09Rik|AI482520|Aof1	lysine (K)-specific demethylase 1B	protein-coding	7.67497296832329	7.76627572688287	7.787014928621	8.14899348784012	7.99138836668674	7.90373409764052	7.87719183759085	7.723594682431	0.0223312744975036	0.876262297498546	0.998431161219273
Merged-chr8-23035456-4	chr8	23035371	23035571	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001277284, intron 1 of 42)	intron (NM_001277284, intron 1 of 42)	372.0	NM_001277284	11733.0	Mm.334444	NM_031158	ENSMUSG00000031543	Ank1	Ank-1|nb|pale	ankyrin 1, erythroid	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115078526-4	chr11	115078453	115078653	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-12878.0	NM_001163753	58222.0	Mm.143789	NM_021411	ENSMUSG00000020732	Rab37	B230331O03Rik|B230354I04Rik	RAB37, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-55469454-4	chr11	55469382	55469582	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013716)	promoter-TSS (NM_013716)	-270.0	NM_013716	27041.0	Mm.39631	NM_013716	ENSMUSG00000018583	G3bp1	AI849976|B430204O07|C87777|G3bp|mKIAA4115	GTPase activating protein (SH3 domain) binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-53317814-1	chr18	53317714	53317914	+	541.0	f1_c57bl6.idr	intron (NM_029394, intron 1 of 6)	ORR1D1|LTR|ERVL-MaLR	72152.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-95514994-4	chr10	95514897	95515097	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080560)	promoter-TSS (NM_080560)	-165.0	NM_080560	93765.0	Mm.371667	NM_080560	ENSMUSG00000074781	Ube2n	1500026J17Rik|AL022654|BB101821|UBC13	ubiquitin-conjugating enzyme E2N	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-36736716-4	chr19	36736627	36736827	+	794.483337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016854)	promoter-TSS (NM_016854)	-123.0	NM_016854	53412.0	Mm.24724	NM_016854	ENSMUSG00000067279	Ppp1r3c	PTG|Ppp1r5	protein phosphatase 1, regulatory (inhibitor) subunit 3C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-87838907-4	chr6	87838815	87839015	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133934)	promoter-TSS (NM_133934)	-156.0	NM_133934	57905.0	Mm.241546	NM_133934	ENSMUSG00000030056	Isy1	5830446M03Rik|AI181014|AU020769	ISY1 splicing factor homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-41530158-4	chr10	41530071	41530271	+	971.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_016898, exon 6 of 6)	3' UTR (NM_016898, exon 6 of 6)	10671.0	NM_016898	53599.0	Mm.269815	NM_016898	ENSMUSG00000019818	Cd164	A115|A24|AA589639|AW540279|MGC-24|MSSP	CD164 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31215706-2	chr14	31215606	31215806	+	827.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2167.0	NM_001025379	218877.0	Mm.27812	NM_001025379	ENSMUSG00000021904	Sema3g	AK129018	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3G	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-134562616-2	chr1	134562516	134562716	+	823.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_152895, intron 1 of 26)	intron (NM_152895, intron 1 of 26)	2438.0	NM_152895	75605.0	Mm.28995	NM_152895	ENSMUSG00000042207	Kdm5b	2010009J12Rik|2210016I17Rik|AW556288|D1Ertd202e|Jarid1b|PLU-1|PUT1|Plu1|RBBP2H1A|Rb-Bp2|mKIAA4034	lysine (K)-specific demethylase 5B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-100850792-4	chr6	100850688	100850888	+	887.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_182939, intron 2 of 8)	ORR1C1|LTR|ERVL-MaLR	17150.0	NM_182939	232314.0	Mm.27223	NM_182939	ENSMUSG00000052144	Ppp4r2	BE691708|C230060M08Rik	protein phosphatase 4, regulatory subunit 2	protein-coding	1.57248435603982	1.60267323731618	0.965502739180357	1.37470424849284	0.725477403425665	0.769630667425057	0.755557969517009	1.68634927832997	-1.2531183904691	0.392650401482329	0.881258234308592
Merged-chr11-23719080-2	chr11	23718980	23719180	+	876.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033654, intron 14 of 17)	L1M4|LINE|L1	51890.0	NM_009044	19696.0	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-69416058-2	chr17	69415958	69416158	+	862.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_026848)	promoter-TSS (NR_026848)	-389.0	NR_026848	77533.0	Mm.266592	NR_026848		C030034I22Rik	-	RIKEN cDNA C030034I22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-130341920-2	chr4	130341820	130342020	+	638.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_149717, intron 1 of 4)	intron (NR_149717, intron 1 of 4)	2856.0	NM_001355400	619605.0	Mm.297196	NM_153160	ENSMUSG00000028772	Zcchc17	2810055E05Rik|HSPC251|LDC4|pNO40|pS1D	zinc finger, CCHC domain containing 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45182388-4	chr7	45182270	45182470	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_053256)	TTS (NM_053256)	1375.0	NM_053256	114640.0	Mm.207078	NM_053256	ENSMUSG00000038300	Pth2	Tifp39|Tip39	parathyroid hormone 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-96371123-4	chr10	96371024	96371224	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	144917.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-60841474-2	chr14	60841374	60841574	+	801.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027436, intron 14 of 18)	intron (NM_027436, intron 14 of 18)	56908.0	NR_040642	70478.0	Mm.274650	NM_027436	ENSMUSG00000021993	Mipep	5730405E07Rik|MIP	mitochondrial intermediate peptidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-60821863-4	chr2	60821769	60821969	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001141932, intron 2 of 14)	intron (NM_001141932, intron 2 of 14)	59569.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-185224854-4	chr1	185224759	185224959	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163754, intron 2 of 34)	MT2A|LTR|ERVL	-18067.0	NR_034044	100217449.0	Mm.429560	NR_034044	ENSMUSG00000077571	Snora36b	MBI-87	small nucleolar RNA, H/ACA box 36B	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-90029570-3	chr11	90029452	90029652	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026433)	promoter-TSS (NM_026433)	-796.0	NM_026433	67888.0	Mm.212428	NM_026433	ENSMUSG00000069763	Tmem100	1810057C19Rik|AV011897	transmembrane protein 100	protein-coding	2.76907797277471	3.09575429953205	2.77957852816865	3.17088857210479	2.79122175674827	3.30320207075327	2.80058508418341	3.10676900576609	0.0935061675890295	0.882990569766747	0.998431161219273
Merged-chr3-36318806-4	chr3	36318692	36318892	+	998.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-96517.0	NM_198192	229214.0	Mm.330975	NM_198192	ENSMUSG00000058400	Qrfpr	AQ27|Gpr103|SP9155	pyroglutamylated RFamide peptide receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-105803091-2	chr1	105802991	105803191	+	614.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009399, intron 1 of 9)	intron (NM_009399, intron 1 of 9)	22368.0	NM_009399	21934.0	Mm.6251	NM_009399	ENSMUSG00000026321	Tnfrsf11a	Ly109|ODFR|OFE|Rank|TRANCE-R|mRANK	tumor necrosis factor receptor superfamily, member 11a, NFKB activator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-115819602-3	chr3	115819502	115819702	+	847.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	68457.0	NR_027894	68161.0	Mm.392043	NR_015487	ENSMUSG00000054426	A930005H10Rik	-	RIKEN cDNA A930005H10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-63752224-2	chr7	63752124	63752324	+	826.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_130880, intron 11 of 13)	intron (NM_130880, intron 11 of 13)	-164633.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3344411-4	chr12	3344317	3344517	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20715.0	NM_008445	16570.0	Mm.7688	NM_008445	ENSMUSG00000020668	Kif3c	mKIAA4058	kinesin family member 3C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133138666-1	chr4	133138566	133138766	+	695.5	f1_c57bl6.idr	intron (NM_153423, intron 1 of 8)	(TGG)n|Simple_repeat|Simple_repeat	8033.0	NM_153423	242687.0	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-47011158-4	chr4	47011050	47011250	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19436.0	NM_001081141	242425.0	Mm.101909	NM_001081141	ENSMUSG00000039809	Gabbr2	GABABR2|Gb2|Gm425|Gpr51	gamma-aminobutyric acid (GABA) B receptor, 2	protein-coding	3.88968806184416	3.87776584565577	4.19572929187388	4.08628772567318	4.39098151817838	3.6473565691819	3.427951102173	3.21579178132212	-0.355937492741376	0.471023923399293	0.92584289530549
Merged-chr15-6413026-2	chr15	6412926	6413126	+	762.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037905, intron 1 of 13)	intron (NM_001037905, intron 1 of 13)	26278.0	NM_001310446	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-123373743-4	chr8	123373653	123373853	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001037877)	promoter-TSS (NM_001037877)	42.0	NM_001286363	66855.0	Mm.178818	NM_025804	ENSMUSG00000001472	Tcf25	1100001J13Rik|1810041K11Rik|D8Ertd325e|Nulp1|mKIAA1049	transcription factor 25 (basic helix-loop-helix)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-98815330-4	chr7	98815210	98815410	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-19802.0	NM_001285794	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-62894673-4	chr9	62894586	62894786	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019663, intron 9 of 13)	intron (NM_019663, intron 9 of 13)	-32662.0	NR_003965	677044.0	Mm.422004	NR_003965	ENSMUSG00000074250	Gm10653	-	ribsomal protein S2 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-11474520-2	chr8	11474420	11474620	+	610.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011227, intron 1 of 1)	B3|SINE|B2	-3409.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6280854-2	chr19	6280754	6280954	+	599.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010119, intron 1 of 4)	PB1D10|SINE|Alu	3958.0	NM_010119	13660.0	Mm.30169	NM_010119	ENSMUSG00000024772	Ehd1	AA409636|Past1|RME-1	EH-domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122913392-3	chr8	122913298	122913498	+	959.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 3 of 12)	intron (NM_001081379, intron 3 of 12)	65024.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	1.58514763304623	0.972537319791133	1.83016982770168	1.44343468082637	1.38266461496056	1.68644911948474	0.960449627870543	1.6847137294854	-0.123291066774997	0.921330731960121	0.998431161219273
Merged-chr9-94703638-4	chr9	94703544	94703744	+	819.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177909, intron 2 of 15)	intron (NM_177909, intron 2 of 15)	33752.0	NM_177909	331004.0	Mm.326125	NM_177909	ENSMUSG00000031129	Slc9a9	5730527A11Rik|9930105B05|AI854429|Nhe9	solute carrier family 9 (sodium/hydrogen exchanger), member 9	protein-coding	1.27616621869446	0.683415810342499	1.30059097004741	0.663280710524695	0.959172451749508	1.36916906820423	1.42434324468906	0.664828976119425	0.513781990754853	0.736429854238039	0.998431161219273
Merged-chr16-49929534-4	chr16	49929421	49929621	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC5|LINE|L1	-26309.0	NR_153658	100503490.0	Mm.72499	NR_153658		Gm19723	-	predicted gene, 19723	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-73395004-3	chr17	73394905	73395105	+	868.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033444, intron 1 of 22)	intron (NM_001033444, intron 1 of 22)	4291.0	NM_001033444	381122.0	Mm.81496	NM_001033444	ENSMUSG00000043705	Capn13	CANP 13|Gm943	calpain 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55592333-2	chr14	55592233	55592433	+	751.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_194346, intron 2 of 20)	intron (NM_194346, intron 2 of 20)	591.0	NM_194346	268749.0	Mm.23748	NM_194346	ENSMUSG00000047098	Rnf31	AL033293|BC031509|Flj10111|HOIP|Paul|mFLJ00217	ring finger protein 31	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-38128623-2	chr1	38128523	38128723	+	565.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359288, intron 1 of 25)	intron (NM_001359288, intron 1 of 25)	1043.0	NM_001359287	56210.0	Mm.389103	NM_019570	ENSMUSG00000026082	Rev1	1110027I23Rik|AU022044|Rev1l	REV1, DNA directed polymerase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64241982-2	chr5	64241882	64242082	+	583.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 1 of 18)	intron (NM_001289514, intron 1 of 18)	11625.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-103352412-2	chr11	103352312	103352512	+	881.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205236, intron 3 of 17)	B3A|SINE|B2	7659.0	NR_045346	653030.0	Mm.440684	NR_045346	ENSMUSG00000085887	Arhgap27os3	F830206d12rik|Gm11648	Rho GTPase activating protein 27, opposite strand 3	ncRNA	-0.129712732042881	0.354203352328905	-0.120600815904682	0.16519589097179	-0.128869891617116	0.363331090781964	-0.119617264916717	0.0347722027453331	-0.250910520841108	0.909830130368368	1
Merged-chr5-105292423-3	chr5	105292322	105292522	+	750.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194336, intron 1 of 10)	intron (NM_194336, intron 1 of 10)	1277.0	NM_194336	100702.0	Mm.491210	NM_194336	ENSMUSG00000104713	Gbp6	AI595338|Mpa2l	guanylate binding protein 6	protein-coding	1.10521142083756	0.782899760151728	1.65897902118187	2.38856473521465	1.11567839860073	1.74691420096085	0.767253730651701	0.749531421887987	-1.48934892987541	0.281529969781464	0.784196698058662
Merged-chr11-70038278-4	chr11	70038168	70038368	+	905.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007864, intron 8 of 19)	intron (NM_007864, intron 8 of 19)	-15856.0	NM_001291131	11889.0	Mm.6559	NM_009714	ENSMUSG00000020884	Asgr1	ASGPR1|Asgr|Asgr-1|HL-1	asialoglycoprotein receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-117357282-2	chr9	117357182	117357382	+	753.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001172121, intron 1 of 14)	intron (NM_001172121, intron 1 of 14)	-104799.0	NM_001172124	207181.0	Mm.326411	NM_178660	ENSMUSG00000039607	Rbms3	6720477E09Rik|8430436O14Rik	RNA binding motif, single stranded interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-33824710-2	chr3	33824610	33824810	+	971.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026222, intron 11 of 19)	intron (NM_026222, intron 11 of 19)	19600.0	NM_026222	51938.0	Mm.275710	NM_026222	ENSMUSG00000027676	Ccdc39	4921507O14Rik|AI447426|AI844750|D3Ertd789e|b2b1304Clo|b2b1735Clo|b2b2025.1Clo|prh	coiled-coil domain containing 39	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-102437679-2	chr7	102437602	102437802	+	541.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_009287)	TTS (NM_009287)	-3993.0	NM_009103	20133.0	Mm.197486	NM_009103	ENSMUSG00000030978	Rrm1	RnrM1	ribonucleotide reductase M1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-12012432-4	chr19	12012353	12012553	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24287.0	NM_146680	258675.0	Mm.271517	NM_146680	ENSMUSG00000067529	Olfr1423	MOR239-3	olfactory receptor 1423	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-12280966-2	chr2	12280866	12281066	+	589.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001309, intron 2 of 29)	ORR1E|LTR|ERVL-MaLR	-20280.0	NR_040353	338535.0	Mm.483275	NR_040353	ENSMUSG00000086843	E030013I19Rik	-	RIKEN cDNA E030013I19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-145654545-2	chr6	145654445	145654645	+	715.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38582.0	NM_009449	22147.0	Mm.270295	NM_009449	ENSMUSG00000067338	Tuba3b	M[a]7|Tuba7	tubulin, alpha 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-31082421-3	chr9	31082332	31082532	+	889.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49367.0	NM_011176	19143.0	Mm.243926	NM_011176	ENSMUSG00000031995	St14	Epithin|MT-SP1|Prss14|Tmprss14|mCAP3|matriptase	suppression of tumorigenicity 14 (colon carcinoma)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-128972858-1	chr6	128972758	128972958	+	751.0	f1_c57bl6.idr	intron (NM_001316752, intron 1 of 5)	intron (NM_001316752, intron 1 of 5)	1698.0	NM_001168223	70809.0	Mm.439891	NM_027562	ENSMUSG00000000248	Clec2g	4632413B12Rik|Clr-c|Clr-d|Clrc|Clrd|Clrx|Ddv10|Ocilrp1	C-type lectin domain family 2, member g	protein-coding	3.4124452598877	4.38154658646258	4.46059123725362	2.53318932809563	1.14518376066589	1.36713812477988	2.78426194729967	1.2404507772161	-3.60805994740205	0.020055261969363	0.179837842382972
Merged-chr5-140502468-4	chr5	140502353	140502553	+	935.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-3156.0	NM_021528	59031.0	Mm.28934	NM_021528	ENSMUSG00000036599	Chst12	AI595374|C4S-2|C4ST2	carbohydrate sulfotransferase 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-76956570-2	chr17	76956470	76956670	+	571.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5b|LINE|L1	1095547.0	NR_033456	100043885.0	Mm.127562	NR_033456		Gm4710	-	predicted gene 4710	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-29569086-4	chr5	29568981	29569181	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133907)	promoter-TSS (NM_133907)	-161.0	NM_133907	100763.0	Mm.137746	NM_133907	ENSMUSG00000039000	Ube3c	AI853514|mKIAA0010	ubiquitin protein ligase E3C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120038677-1	chr11	120038577	120038777	+	1000.0	f1_c57bl6.idr	intron (NM_001198785, intron 1 of 13)	intron (NM_001198785, intron 1 of 13)	3104.0	NM_001198787	11302.0	Mm.6826	NM_007377	ENSMUSG00000025375	Aatk	AATYK|aatyk1|mKIAA0641	apoptosis-associated tyrosine kinase	protein-coding	-1.3681463318974	-1.33624156493372	-1.34650167276047	-0.80669348975676	-1.36769697821496	-1.33401815676661	-1.34417900924365	-1.3534210303531	-2.3580830592467	0.49586638340111	1
Merged-chr11-97985488-4	chr11	97985374	97985574	+	951.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163608, intron 1 of 13)	intron (NM_001163608, intron 1 of 13)	972.0	NM_028199	72324.0	Mm.39617	NM_028199	ENSMUSG00000017417	Plxdc1	2410003I07Rik|AI848450|Tem7	plexin domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-118048448-1	chr10	118048348	118048548	+	592.0	f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	-93339.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	-1.1969635221358	-1.1728167222526	-1.18320539065972	-1.19173895220319	-1.05379057362676	-1.17056545447141	-0.8655974552034	-1.03055554835562	2.44880038746745	0.420790325217469	1
Merged-chr5-148542399-4	chr5	148542309	148542509	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359199, intron 3 of 6)	intron (NM_001359199, intron 3 of 6)	9264.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-84983255-5	chr15	84983154	84983354	+	699.299988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033273, intron 1 of 9)	intron (NM_001033273, intron 1 of 9)	4717.0	NM_001033273	223739.0	Mm.323925	NM_001033273	ENSMUSG00000036046	5031439G07Rik	AW554572|mKIAA0930	RIKEN cDNA 5031439G07 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-152011215-2	chr4	152011115	152011315	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033352, intron 1 of 3)	intron (NM_001033352, intron 1 of 3)	2324.0	NM_001033352	242785.0	Mm.22306	NM_001033352	ENSMUSG00000073700	Klhl21	1810045K06Rik|D330008A20|mKIAA0469	kelch-like 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-88821086-4	chr6	88820984	88821184	+	892.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166249, intron 6 of 7)	intron (NM_001166249, intron 6 of 7)	20851.0	NM_001362152	80283.0	Mm.166858	NM_030251	ENSMUSG00000030083	Abtb1	AI847549|BC003234|BPOZ|EF1ABP	ankyrin repeat and BTB (POZ) domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-41519141-3	chr5	41519036	41519236	+	900.8110960000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	188555.0	NM_001310592	100972.0	Mm.41555	NM_027295	ENSMUSG00000029128	Rab28	2700023P08Rik|AW496496	RAB28, member RAS oncogene family	protein-coding	2.77421011081995	3.19978498839635	2.81908024861262	1.5400515217547	0.982776219254549	1.10851738326398	1.07024999920695	1.90842847714081	-3.51247039021136	0.00204693679338274	0.0339850262565821
Merged-chr2-30059232-2	chr2	30059132	30059332	+	689.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-2764.0	NM_023871	56086.0	Mm.326055	NM_023871	ENSMUSG00000054766	Set	2610030F17Rik|5730420M11Rik|AA407739|I-2PP2A|StF-IT-1|TAF-I	SET nuclear oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-82559270-2	chr18	82559170	82559370	+	682.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001025245)	TTS (NM_001025245)	4762.0	NM_001025254	17196.0	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-93417967-2	chr3	93417867	93418067	+	741.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M3e|LINE|L1	-10524.0	NR_039585	100628630.0		NR_039585	ENSMUSG00000093269	Mir5124a	Mir5124|mmu-mir-5124|mmu-mir-5124a|mu-mir-5124	microRNA 5124a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-66001587-2	chr5	66001487	66001687	+	592.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_027961, intron 1 of 6)	intron (NR_027961, intron 1 of 6)	2698.0	NR_027961	231253.0	Mm.436542	NM_177679	ENSMUSG00000054598	9130230L23Rik	-	RIKEN cDNA 9130230L23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-25117427-3	chr17	25117330	25117530	+	832.244446	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1463.0	NM_001163661	71718.0	Mm.288702	NM_027880	ENSMUSG00000024170	Telo2	1200003M09Rik|AI415602|Tel2|mKIAA0683	telomere maintenance 2	protein-coding	2.363138832452	2.52238002398061	2.71699204743917	1.76549749659357	3.40001697996738	4.10957278906326	3.07465917949036	2.97709967841868	1.92563966115649	0.00596017155065245	0.0763453433431261
Merged-chr3-136347518-4	chr3	136347411	136347611	+	808.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M5|LINE|L1	-21445.0	NM_001033350	242248.0	Mm.30832	NM_001033350	ENSMUSG00000037922	Bank1	A530094C12Rik|AI451642|AVIEF|BANK	B cell scaffold protein with ankyrin repeats 1	protein-coding	1.16036758399628	0.741686031860997	1.1220774243737	1.74608097960062	1.17126839913328	0.744870246054224	0.730561982676571	1.83514257338155	-0.107415297658258	0.941400821331233	0.998431161219273
Merged-chr16-29945454-4	chr16	29945225	29945425	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33799.0	NR_037689	328657.0	Mm.425982	NM_001033403		Gm1968	-	predicted gene 1968	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-6519806-4	chr11	6519697	6519897	+	999.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178440, intron 1 of 21)	intron (NM_178440, intron 1 of 21)	1161.0	NM_178440	246177.0	Mm.239554	NM_178440	ENSMUSG00000020437	Myo1g	E430002D17Rik	myosin IG	protein-coding	3.84306476486322	3.72754175220234	3.60667294805826	2.71446725587218	3.20740414920654	2.76702389581496	3.83870816885621	3.59670976512102	-0.194064650413756	0.73894340085588	0.998431161219273
Merged-chr17-67339793-4	chr17	67339670	67339870	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	14689.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-28814588-2	chr3	28814488	28814688	+	855.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9080.0	NM_026517	68028.0	Mm.21724	NM_026517	ENSMUSG00000039221	Rpl22l1	3110001N18Rik|AU041196	ribosomal protein L22 like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-44766565-2	chr16	44766465	44766665	+	702.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021325, intron 1 of 6)	intron (NM_021325, intron 1 of 6)	829.0	NM_021325	57781.0	Mm.416152	NM_021325	ENSMUSG00000022667	Cd200r1	CD200R|Mox2r|OX2R	CD200 receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-98937032-4	chr15	98936979	98937179	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2689.0	NM_011654	22143.0	Mm.392113	NM_011654	ENSMUSG00000023004	Tuba1b	Tuba2	tubulin, alpha 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-114921089-2	chr5	114920963	114921163	+	793.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus1|LINE|L1	-2177.0	NM_001359946	231655.0	Mm.95479	NM_145209	ENSMUSG00000041827	Oasl1	7530414C13Rik|oasl9	2'-5' oligoadenylate synthetase-like 1	protein-coding	-1.36158454595133	-1.47822759111024	-1.18607247513481	-1.49569248157156	-1.50770913340644	-1.47614970994611	-1.48564551206007	-1.49428262236028	-1.96236487219075	0.570858188942749	1
Merged-chr1-184736152-2	chr1	184736052	184736252	+	656.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3659.0	NM_008250	15284.0	Mm.1347	NM_008250	ENSMUSG00000039377	Hlx	Hlx1	H2.0-like homeobox	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-40151084-1	chr8	40150984	40151184	+	791.333313	f0_balb.idr	Intergenic	Intergenic	135869.0	NM_030610	80857.0	Mm.425526	NM_030610	ENSMUSG00000031603	Fgf20	-	fibroblast growth factor 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-63136393-1	chr11	63136293	63136493	+	791.0	f0_balb.idr	intron (NM_001302255, intron 3 of 4)	intron (NM_001302255, intron 3 of 4)	3590.0	NM_001302260	18858.0	Mm.1237	NM_008885	ENSMUSG00000018217	Pmp22	22kDa|Gas-3|HNPP|TRE002|Tr|trembler	peripheral myelin protein 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-122804643-4	chr6	122804547	122804747	+	999.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15537.0	NM_021899	60611.0	Mm.87142	NM_021899	ENSMUSG00000003154	Foxj2	Fhx	forkhead box J2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-12012649-3	chr15	12012553	12012753	+	798.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-16646.0	NM_011294	20024.0	Mm.41746	NM_011294	ENSMUSG00000022205	Sub1	AI842364|P15|P9|Pc4|Rpo2tc1	SUB1 homolog (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-30188204-4	chr16	30188095	30188295	+	975.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	79337.0	NM_027904	71756.0	Mm.290614	NM_027904	ENSMUSG00000023176	Cpn2	1300018K11Rik	carboxypeptidase N, polypeptide 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-93641219-5	chr10	93641119	93641319	+	703.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_021320, exon 1 of 10)	5' UTR (NM_021320, exon 1 of 10)	170.0	NM_021320	57764.0	Mm.483868	NM_021320	ENSMUSG00000020019	Ntn4	-	netrin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-73451827-3	chr14	73451722	73451922	+	661.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58227.0	NM_026119	67381.0	Mm.282888	NM_026119	ENSMUSG00000022109	Med4	2410046H15Rik|DRIP36|HSPC126|TRAP36|Vdirp|Vdrip	mediator complex subunit 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-72355122-2	chr11	72355022	72355222	+	625.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001282006, intron 4 of 7)	intron (NM_001282006, intron 4 of 7)	6174.0	NM_001282007	21689.0	Mm.42257	NM_011569	ENSMUSG00000020799	Tekt1	MT14	tektin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-87399719-2	chr12	87399619	87399819	+	673.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-11364.0	NM_011479	20773.0	Mm.565	NM_011479	ENSMUSG00000021036	Sptlc2	LCB2|LCB2a|Spt2	serine palmitoyltransferase, long chain base subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-32086447-2	chr14	32086347	32086547	+	729.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_104303)	promoter-TSS (NR_104303)	719.0	NM_145460	218885.0	Mm.202257	NM_145460	ENSMUSG00000021906	Oxnad1	2410002F01Rik|AW492292|BC019806	oxidoreductase NAD-binding domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-97059830-4	chr15	97059729	97059929	+	935.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3873.0	NM_027052	69354.0	Mm.250980	NM_027052	ENSMUSG00000022464	Slc38a4	1110012E16Rik|1700012A18Rik|Ata3|mATA3|mNAT3	solute carrier family 38, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-10860823-2	chr11	10860723	10860923	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13B|LTR|ERVK	-253193.0	NM_177033	319922.0	Mm.337851	NM_177033	ENSMUSG00000050830	Vwc2	A930041G11Rik|G11|PSST739|UNQ739|cradin	von Willebrand factor C domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-106507901-1	chr8	106507801	106508001	+	598.5	f0_balb.idr	Intergenic	CpG	-2951.0	NM_007665	12560.0	Mm.4658	NM_007665	ENSMUSG00000061048	Cdh3	AI385538|Cadp|Cdhp|P-cadherin|Pcad	cadherin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75152737-7	chr11	75152616	75152816	+	823.904785	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001002764, intron 15 of 18)	intron (NM_001002764, intron 15 of 18)	15436.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	2.64732633318945	1.07749303894353	1.50427875468809	1.46169135109756	1.80436327521302	1.08307989922232	2.37823462073633	1.77788480590499	-0.00781911737094552	0.994663046080559	0.998431161219273
Merged-chr3-22113917-2	chr3	22113769	22113969	+	546.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030732, intron 1 of 15)	intron (NM_030732, intron 1 of 15)	37217.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-176000101-2	chr1	176000001	176000201	+	791.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357846, intron 4 of 8)	intron (NM_001357846, intron 4 of 8)	79772.0	NM_001290692	226720.0	Mm.11282	NM_001290692	ENSMUSG00000104158	Becn2	Beclin-2|Gm104	beclin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-186182750-3	chr1	186182645	186182845	+	958.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65435.0	NM_146106	226791.0	Mm.257116	NM_146106	ENSMUSG00000039246	Lyplal1	BC027340|Q96AVO	lysophospholipase-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-64022479-3	chr15	64022440	64022640	+	768.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144846, intron 1 of 11)	MIR3|SINE|MIR	-24474.0	NM_001360035	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	1.97634824724127	2.24929892662233	1.1524211765132	0.90227081773894	1.08056888868418	0.942042843632013	2.0087519672577	1.47249955031386	-0.738903613329962	0.56464365561392	0.960753698599198
Merged-chr7-19703576-2	chr7	19703476	19703676	+	606.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001109748, intron 5 of 8)	intron (NM_001109748, intron 5 of 8)	-4388.0	NM_009696	11816.0	Mm.305152	NM_009696	ENSMUSG00000002985	Apoe	AI255918|Apo-E	apolipoprotein E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-19418182-4	chr14	19418088	19418288	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GSAT_MM|Satellite|Satellite	184399.0	NM_001024706	432825.0	Mm.327147	NM_001024706	ENSMUSG00000095024	Gm5458	EG432825	predicted gene 5458	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-29200052-4	chr2	29199970	29200170	+	927.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305805, intron 4 of 7)	intron (NM_001305805, intron 4 of 7)	48029.0	NM_001305805	171171.0	Mm.442448	NM_133500	ENSMUSG00000035513	Ntng2	2610016D08Rik|Lmnt2	netrin G2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81859610-3	chr15	81859487	81859687	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-1261.0	NM_020507	57259.0	Mm.323595	NM_020507	ENSMUSG00000048546	Tob2	2900090N22Rik|4930545K18Rik|AV071822|mKIAA1663	transducer of ERBB2, 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115634936-2	chr11	115634836	115635036	+	994.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F2|SINE|Alu	-6641.0	NM_001252395	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-114817518-2	chr13	114817418	114817618	+	603.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013826)	promoter-TSS (NM_013826)	-719.0	NM_013826	17434.0	Mm.19027	NM_013826	ENSMUSG00000015536	Mocs2	AI415403	molybdenum cofactor synthesis 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-105627295-4	chr5	105627207	105627407	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72662.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123035677-2	chr5	123035577	123035777	+	792.166626	f1_balb.idr|f1_c57bl6.idr	TTS (NR_153115)	TTS (NR_153115)	11339.0	NM_029112	74890.0	Mm.141383	NM_029112	ENSMUSG00000029477	Morn3	4930438O03Rik	MORN repeat containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-8384087-2	chr12	8383986	8384186	+	997.099976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	70653.0	NM_021429	58240.0	Mm.309954	NM_021429	ENSMUSG00000020605	Hs1bp3	-	HCLS1 binding protein 3	protein-coding	1.88709201796052	1.73108084281484	0.904421017045244	1.94475107705819	0.625115202063986	0.682035219967958	0.664153230484989	0.648425595625676	-5.1526916624213	0.00081454963844574	0.0164343608106592
Merged-chr17-10350701-2	chr17	10350601	10350801	+	646.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26099.0	NR_045461	76634.0	Mm.491052	NR_045461	ENSMUSG00000099384	1700110C19Rik	-	RIKEN cDNA 1700110C19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-16366502-1	chr14	16366402	16366602	+	569.0	f0_balb.idr	intron (NM_009409, intron 1 of 35)	intron (NM_009409, intron 1 of 35)	1296.0	NM_009409	21974.0	Mm.130362	NM_009409	ENSMUSG00000017485	Top2b	D230016L12Rik|Top-2	topoisomerase (DNA) II beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-32748851-2	chr5	32748778	32748978	+	812.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177298, intron 3 of 7)	intron (NM_177298, intron 3 of 7)	-2536.0	NM_001347332	320951.0	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	0.323297157238339	0.990113005369317	0.339587447699374	0.783184693056781	0.324818845437837	1.00185180588691	0.341325458839035	0.789489286349332	0.035222234713458	0.98495094405542	1
Merged-chr2-118764669-2	chr2	118764545	118764745	+	793.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1984.0	NM_001001982	214239.0	Mm.379342	NM_001001982	ENSMUSG00000045838	A430105I19Rik	Ccdc9b|Gm353	RIKEN cDNA A430105I19 gene	protein-coding	1.66760333749477	1.34852850600798	2.15845752641995	1.99348679287268	1.02244865855092	1.09745611919252	1.95909248369227	2.42918853893072	-0.116668664812841	0.921232972080791	0.998431161219273
Merged-chr5-143499886-3	chr5	143499788	143499988	+	846.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144915, intron 11 of 14)	intron (NM_144915, intron 11 of 14)	28105.0	NM_009007	19353.0	Mm.292510	NM_009007	ENSMUSG00000001847	Rac1	AL023026|D5Ertd559e	Rac family small GTPase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180192018-2	chr1	180191927	180192127	+	546.5	f0_balb.idr|f0_c57.idr	intron (NM_023341, intron 1 of 14)	intron (NM_023341, intron 1 of 14)	1458.0	NM_001163290	67426.0	Mm.38330	NM_023341	ENSMUSG00000026489	Coq8a	4632432J16Rik|AI462003|Adck3|Cabc1|mKIAA0451	coenzyme Q8A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-118217567-1	chr4	118217467	118217667	+	598.0	f1_balb.idr	intron (NM_011213, intron 21 of 32)	intron (NM_011213, intron 21 of 32)	-7003.0	NR_106085	102466820.0		NR_106085	ENSMUSG00000098596	Mir7226	Gm27630|mmu-mir-7226	microRNA 7226	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-31069718-4	chr2	31069643	31069843	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355105, intron 6 of 15)	MTB_Mm|LTR|ERVL-MaLR	26757.0	NM_001177650	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-86502773-2	chr1	86502673	86502873	+	613.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23784.0	NR_153834	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70867815-2	chr8	70867738	70867938	+	989.25	f1_balb.idr|f1_c57bl6.idr	TTS (NM_026964)	TTS (NM_026964)	5652.0	NM_026964	234388.0	Mm.295791	NM_026964	ENSMUSG00000007721	Ccdc124	1810023B24Rik	coiled-coil domain containing 124	protein-coding	0.84336864157393	0.883427192015309	0.370541090978299	0.803464989950061	1.10520373437354	0.379840008708592	0.372218298224988	0.365689871317705	-0.698798441236308	0.705634627823819	1
Merged-chr11-49084163-2	chr11	49084063	49084263	+	789.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271677, intron 1 of 2)	intron (NM_001271677, intron 1 of 2)	-2854.0	NM_001271676	15953.0	Mm.24769	NM_008330	ENSMUSG00000078920	Ifi47	47kDa|IRG-47|Ifggc1|Igrd|Iigp4|Iipg4|Irgd	interferon gamma inducible protein 47	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-20548570-4	chr16	20548478	20548678	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_030670)	promoter-TSS (NR_030670)	-22.0	NR_030670	100042948.0	Mm.406754	NR_030670		Gm15760	-	mitochondrial ribosomal protein S18B pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-104247752-3	chr12	104247651	104247851	+	712.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033450)	promoter-TSS (NR_033450)	-145.0	NR_033450	546546.0	Mm.390522	NM_001034870		Serpina3h	6C28|Spi2	serine (or cysteine) peptidase inhibitor, clade A, member 3H	pseudo	2.6597546042656	3.63486926212873	2.69001099441885	1.29238398960614	2.08505502904617	2.68714045962841	3.8990017649054	1.30033383281619	0.0765936226695845	0.959797768062411	0.998431161219273
Merged-chr11-44470574-4	chr11	44470458	44470658	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024475)	promoter-TSS (NM_024475)	-10.0	NM_024475	79560.0	Mm.338784	NM_024475	ENSMUSG00000041231	Ublcp1	4930527B16Rik|8430435I17Rik|BC002236	ubiquitin-like domain containing CTD phosphatase 1	protein-coding	2.87455794521537	3.49690601207736	3.53619413603264	3.20899774624532	2.9880276613236	3.00979851013686	3.75466125713919	3.13578440254919	-0.0566932125785489	0.923660654726858	0.998431161219273
Merged-chr17-46523261-4	chr17	46523149	46523349	+	888.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081335, intron 17 of 40)	intron (NM_001081335, intron 17 of 40)	23139.0	NM_001081335	78309.0	Mm.329076	NM_001081335	ENSMUSG00000040327	Cul9	1810035I07Rik|Cul-9|Parc|mKIAA0708	cullin 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-88486083-2	chr9	88485983	88486183	+	642.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	AT_rich|Low_complexity|Low_complexity	-3686.0	NM_001284328	56403.0	Mm.260545	NM_019666	ENSMUSG00000032423	Syncrip	2610109K23Rik|4632417O19Rik|GRY-RBP|Nsap1|Nsap1l|hnRNP Q|pp68	synaptotagmin binding, cytoplasmic RNA interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-45110188-1	chr13	45110088	45110288	+	630.0	f1_c57bl6.idr	Intergenic	Intergenic	-108092.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	2.39300021895114	2.88495139397427	1.29570831814484	2.70403687940468	1.82437349017894	2.36847197619785	1.30414160765071	2.93959961027122	-0.387671004527786	0.698915691551939	0.998284579433352
Merged-chr13-100317470-4	chr13	100317385	100317585	+	872.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010871)	promoter-TSS (NM_010871)	203.0	NM_021545	53880.0	Mm.218759	NM_021545		Naip7	Birc1g|Naip-rs4B|Naip6	NLR family, apoptosis inhibitory protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-103606890-1	chr11	103606790	103606990	+	573.0	f1_balb.idr	intron (NM_001033434, intron 3 of 13)	BGLII_Mus|LTR|ERVK	7849.0	NM_001033434	380730.0	Mm.380214	NM_001033434	ENSMUSG00000034239	Gm884	LRRC37	predicted gene 884	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55689739-4	chr14	55689662	55689862	+	845.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER4B|LTR|ERVK	-7945.0	NM_145705	28113.0	Mm.29346	NM_145705	ENSMUSG00000007589	Tinf2	AW552114|D14Wsu146e|Tin2	Terf1 (TRF1)-interacting nuclear factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-86676233-3	chr4	86676189	86676389	+	750.766663	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR34B_MM|LTR|ERVK	-6230.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	1.63703115560249	1.69800513439877	1.27544281387326	1.57136576882396	0.887098152389316	0.74890674914774	0.734733313997339	0.722410797522006	-4.18606408753818	0.00584709223947828	0.0754337770852262
Merged-chr8-94984006-3	chr8	94983886	94984086	+	836.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018882)	promoter-TSS (NM_018882)	-413.0	NM_018882	14766.0	Mm.290834	NM_018882	ENSMUSG00000031785	Adgrg1	Cyt28|Gpr56|TM7LN4|TM7XN1	adhesion G protein-coupled receptor G1	protein-coding	0.820657806510186	0.681758182530276	0.887069440767662	1.30631468088413	0.640467994637633	1.66395183597142	0.893982383461869	1.78717377402742	1.57402074477664	0.277548587731166	0.781378569827891
Merged-chr17-29002929-1	chr17	29002829	29003029	+	724.0	f1_c57bl6.idr	intron (NM_001357173, intron 1 of 13)	PB1D10|SINE|Alu	5066.0	NM_134115	106504.0	Mm.439986	NM_134115	ENSMUSG00000024006	Stk38	5830476G13Rik|9530097A09Rik|AA617404|Ndr1	serine/threonine kinase 38	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-64297023-4	chr1	64296921	64297121	+	947.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC3|LINE|L1	-175632.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-150608095-3	chr2	150607998	150608198	+	639.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356491, intron 1 of 9)	intron (NM_001356491, intron 1 of 9)	469.0	NM_001356491	71881.0	Mm.26599	NM_027977	ENSMUSG00000033096	Apmap	2310001A20Rik|AI314817	adipocyte plasma membrane associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-60515403-2	chr14	60515303	60515503	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Charlie1|DNA|hAT-Charlie	-119302.0	NM_001033272	219140.0	Mm.149776	NM_001033272	ENSMUSG00000021990	Spata13	C79050|ESTM11|X83327|mFLJ00298	spermatogenesis associated 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-94658426-4	chr1	94658282	94658482	+	903.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A0|LTR|ERVL-MaLR	-139060.0	NR_040473	74689.0	Mm.399187	NR_040473	ENSMUSG00000100518	4930440C22Rik	-	RIKEN cDNA 4930440C22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-127813696-2	chr8	127813596	127813796	+	738.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	464529.0	NR_105822	102465212.0		NR_105822	ENSMUSG00000099326	Mir21c	Gm28013|mmu-mir-21c	microRNA 21c	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69414192-3	chr11	69414113	69414313	+	898.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001017426)	promoter-TSS (NM_001017426)	-538.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56475349-3	chr17	56475261	56475461	+	818.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252455, intron 1 of 27)	intron (NM_001252455, intron 1 of 27)	1119.0	NM_001252455	19280.0	Mm.258771	NM_011218	ENSMUSG00000013236	Ptprs	AL022616|PTP|PTP-NU3|PTPNU-3|PTPsigma|Ptpt9|R-PTP-S|RPTPsigma	protein tyrosine phosphatase, receptor type, S	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-131555457-2	chr7	131555357	131555557	+	816.666626	f1_balb.idr|f1_c57bl6.idr	exon (NM_145998, exon 2 of 2)	exon (NM_145998, exon 2 of 2)	1395.0	NM_145998	15372.0	Mm.303357	NM_145998	ENSMUSG00000050100	Hmx2	Nkx-5.2|Nkx5-2	H6 homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152687335-2	chr1	152687235	152687435	+	980.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346117, intron 1 of 18)	intron (NM_001346117, intron 1 of 18)	-62118.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-63916093-3	chr9	63916026	63916226	+	937.044434	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	105933.0	NM_008542	17130.0	Mm.325757	NM_008542	ENSMUSG00000036867	Smad6	Madh6|b2b390Clo	SMAD family member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-3495499-2	chr5	3495399	3495599	+	830.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 5 of 7)	B3A|SINE|B2	-48334.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44300136-1	chr7	44300036	44300236	+	594.0	f0_c57.idr	Intergenic	Intergenic	6823.0	NM_009131	20256.0	Mm.20428	NM_009131	ENSMUSG00000004473	Clec11a	AW457320|Clecsf3|Scgf	C-type lectin domain family 11, member a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111746292-3	chr12	111746175	111746375	+	687.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163388, intron 4 of 5)	intron (NM_001163388, intron 4 of 5)	-12574.0	NM_001361612	16593.0	Mm.278357	NM_008450	ENSMUSG00000021288	Klc1	AI874768|Kns2	kinesin light chain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-3330695-4	chr11	3330608	3330808	+	906.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178149)	promoter-TSS (NM_178149)	-23.0	NM_178149	216505.0	Mm.390323	NM_178149	ENSMUSG00000034614	Pik3ip1	1500004A08Rik|5830455E04Rik|Crkd|Hgfl	phosphoinositide-3-kinase interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-67252498-1	chr18	67252398	67252598	+	857.0	f0_balb.idr	Intergenic	Lx8|LINE|L1	-6668.0	NM_001357518	225651.0	Mm.235792	NM_172630	ENSMUSG00000062526	Mppe1	Pgap5	metallophosphoesterase 1	protein-coding	-0.240545690298764	-0.221649080166845	-0.227781816960254	-0.23255142146256	0.30352991451751	-0.22027415143323	-0.226424479602096	0.816024449297793	4.05271707673458	0.0906823576225176	1
Merged-chr13-100201030-2	chr13	100200930	100201130	+	782.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001126182, intron 1 of 15)	Lx9|LINE|L1	1092.0	NM_001126182	17948.0	Mm.89961	NM_010872	ENSMUSG00000078945	Naip2	Birc1b|Naip-rs6	NLR family, apoptosis inhibitory protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-47150859-3	chr7	47150764	47150964	+	817.111145	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17180.0	NM_013643	19259.0	Mm.4654	NM_013643	ENSMUSG00000030854	Ptpn5	Step	protein tyrosine phosphatase, non-receptor type 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-148655164-4	chr4	148655078	148655278	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085505, intron 3 of 10)	intron (NM_001085505, intron 3 of 10)	11861.0	NM_001085505	230909.0	Mm.332067	NM_001085505	ENSMUSG00000070577	Gm572	b2b1167Clo	predicted gene 572	protein-coding	4.07121133954931	3.83284692247244	4.47757351002232	3.67834400228368	3.84417155876385	3.86069179529441	3.45983720495902	4.46983680958763	-0.11983024363381	0.800176854267702	0.998431161219273
Merged-chr14-105501095-4	chr14	105500997	105501197	+	984.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045921, intron 1 of 2)	intron (NR_045921, intron 1 of 2)	2309.0	NR_045921	74864.0	Mm.159344	NR_045921	ENSMUSG00000022116	4930449E01Rik	-	RIKEN cDNA 4930449E01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-64821092-4	chr17	64821065	64821265	+	905.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14906.0	NM_030031	78057.0	Mm.109380	NM_030031	ENSMUSG00000024088	4930583I09Rik	-	RIKEN cDNA 4930583I09 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-54651232-4	chr14	54651123	54651323	+	962.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_038053, exon 2 of 6)	non-coding (NR_038053, exon 2 of 6)	712.0	NR_038053	75913.0	Mm.474799	NR_038053		4930579G18Rik	-	RIKEN cDNA 4930579G18 gene	ncRNA	4.53597248410931	3.97783045447677	4.50348089568266	3.48060668248522	3.95937958531829	4.29142818401572	4.48758520607571	4.4085302724413	0.133303426174049	0.760053215437735	0.998431161219273
Merged-chr14-73132875-3	chr14	73132886	73133086	+	682.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	-9524.0	NM_001170694	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-73556978-3	chr7	73556933	73557133	+	888.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_037569, intron 1 of 4)	intron (NR_037569, intron 1 of 4)	1362.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-107611432-3	chr5	107611339	107611539	+	780.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359917, intron 6 of 12)	intron (NM_001359917, intron 6 of 12)	13478.0	NM_001359916	231571.0	Mm.482420	NM_144911	ENSMUSG00000033773	Rpap2	AW060207	RNA polymerase II associated protein 2	protein-coding	2.87056186083131	3.95906639061834	2.60181916292772	3.39377105479077	3.24673421204046	4.04575504517031	2.62391767637646	3.68931822510905	0.300215925208596	0.634118874000439	0.982417279970648
Merged-chr2-71546768-2	chr2	71546668	71546868	+	853.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010054)	promoter-TSS (NM_010054)	-14.0	NM_010054	13392.0	Mm.3896	NM_010054	ENSMUSG00000023391	Dlx2	AW121999|Dlx-2|Tes-1	distal-less homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-45011613-4	chr12	45011531	45011731	+	976.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144552, intron 2 of 5)	intron (NM_144552, intron 2 of 5)	62852.0	NM_144552	217517.0	Mm.285400	NM_144552	ENSMUSG00000046314	Stxbp6	BC024598|C85317	syntaxin binding protein 6 (amisyn)	protein-coding	4.00736470389577	4.11206851799234	4.94170521982037	4.15894926607902	3.56999400728507	3.66081593200035	3.62794195526851	3.10601367276639	-1.18801162268974	0.0130250910580197	0.131250035706148
Merged-chr9-58267116-2	chr9	58267016	58267216	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13952.0	NM_026942	69106.0	Mm.216502	NM_026942	ENSMUSG00000032333	Stoml1	1810015E19Rik|AI847431|SLP1|STORP|UNC24|WPB72	stomatin-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-60447304-2	chr1	60447204	60447404	+	596.666626	f1_balb.idr|f1_c57bl6.idr	exon (NM_001198571, exon 6 of 11)	exon (NM_001198571, exon 6 of 11)	37685.0	NM_001198570	329165.0	Mm.212066	NM_198127	ENSMUSG00000026782	Abi2	8430425M24Rik|AI839867|C130078H13	abl-interactor 2	protein-coding	-0.219214499991725	-0.206309328504828	0.334308945890837	0.193073273464587	0.146931876017421	-0.205350908930942	-0.209617653237372	-0.213246233978734	-1.46033247523421	0.549018776790487	1
Merged-chr2-155819950-2	chr2	155819850	155820050	+	969.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015528)	promoter-TSS (NR_015528)	-747.0	NR_015528	613262.0	Mm.330707	NR_015528	ENSMUSG00000074649	BC029722	-	cDNA sequence BC029722	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-32935769-3	chr19	32935700	32935900	+	825.900024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	178223.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	0.0898808025294468	0.119310057264105	0.109851066400802	0.862921295432711	0.0917682837015598	0.121419320927609	0.336041932822692	1.36859348804257	1.29790594956259	0.524846627476948	1
Merged-chr9-64793079-4	chr9	64792971	64793171	+	790.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17940.0	NM_001162917	102442.0	Mm.222473	NM_176935	ENSMUSG00000053641	Dennd4a	AI115600|AI851943|F730015K02Rik	DENN/MADD domain containing 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-157567505-2	chr2	157567405	157567605	+	821.599976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1144.0	NM_016916	53619.0	Mm.480461	NM_016916	ENSMUSG00000067787	Blcap	AI462828|Bc10	bladder cancer associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-159784881-4	chr2	159784814	159785014	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-162427.0	NR_040498	71081.0	Mm.383491	NR_040498	ENSMUSG00000085198	4933416E03Rik	-	RIKEN cDNA 4933416E03 gene	ncRNA	-0.114073979632217	-0.235704315275277	0.297823926313202	-0.242811737806717	0.0081544205883835	0.1061673223422	-0.238838456258253	-0.242272974187273	-0.300058862281854	0.895780792502749	1
Merged-chr2-129588141-4	chr2	129588016	129588216	+	834.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4723.0	NM_001291020	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	2.71721481807361	2.08119786976714	2.85233859117368	2.13574194894226	3.10814065967499	2.09661134794623	3.59863376155805	2.78570878379016	0.977558827789034	0.199099720087174	0.682643867862233
Merged-chr2-128828673-4	chr2	128828562	128828762	+	905.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355629, intron 5 of 18)	intron (NM_001355629, intron 5 of 18)	10359.0	NM_001355629	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-30010853-3	chr19	30010789	30010989	+	845.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4c|LINE|L1	7099.0	NM_025741	66745.0	Mm.158128	NM_025741	ENSMUSG00000024815	Trpd52l3	4931412G03Rik	tumor protein D52-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-52112425-3	chr3	52112338	52112538	+	579.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7432.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-102066420-2	chr15	102066320	102066520	+	601.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-7353.0	NM_145625	75705.0	Mm.290022	NM_145625	ENSMUSG00000058655	Eif4b	2310046H11Rik|AL024095|C85189|Eif4a2	eukaryotic translation initiation factor 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35214814-4	chr17	35214736	35214936	+	859.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9485.0	NM_010735	16992.0	Mm.87787	NM_010735	ENSMUSG00000024402	Lta	LT|LT-[a]|LT-alpha|LT[a]|LTalpha|Ltx|TNF-beta|TNFSF1|Tnfb|Tnfsf1b|Tnlg1e|hlb382	lymphotoxin A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141356513-2	chr7	141356413	141356613	+	602.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133191, intron 9 of 20)	intron (NM_133191, intron 9 of 20)	8597.0	NR_033532	320871.0	Mm.475463	NM_177280	ENSMUSG00000086844	B230206H07Rik	-	RIKEN cDNA B230206H07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-93987184-3	chr11	93987043	93987243	+	854.650024	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8948.0	NM_001199203	70834.0	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	0.322570356227225	0.318090150340992	0.621674421045027	-0.0361436205996369	-0.041586937264683	-0.0261490592588356	-0.0311824202616899	0.126594885951739	-3.02587520959832	0.157839248497179	1
Merged-chr14-20253484-3	chr14	20253388	20253588	+	869.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15674.0	NM_029006	74571.0	Mm.105571	NM_029006	ENSMUSG00000023387	Kcnk16	4731413G05Rik|TALK-1|TALK1	potassium channel, subfamily K, member 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-163766407-4	chr2	163766262	163766462	+	852.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16123.0	NM_001272052	11486.0	Mm.388	NM_007398	ENSMUSG00000017697	Ada	-	adenosine deaminase	protein-coding	1.5745471174186	4.07884212327152	2.85662708400511	3.76511299398918	4.62446518681511	4.17460638385823	4.51496935453265	4.51271543546715	1.52268251881833	0.00975381103925704	0.106970955072217
Merged-chr4-6444029-4	chr4	6443910	6444110	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010945, intron 1 of 30)	intron (NM_010945, intron 1 of 30)	10261.0	NM_010945	18201.0	Mm.3059	NM_010945	ENSMUSG00000028245	Nsmaf	AA959567|C630007J05|Fan	neutral sphingomyelinase (N-SMase) activation associated factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-29119576-2	chr2	29119476	29119676	+	618.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2C_Mm|LTR|ERVL	-5416.0	NM_198033	269254.0	Mm.41867	NM_198033	ENSMUSG00000043535	Setx	A130090N03|A930037J23Rik|AOA2|AW060766|Als4|SCAR1|Sen1|mKIAA0625	senataxin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88382102-2	chr3	88382002	88382202	+	690.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	2364.0	NM_007541	12096.0	Mm.389459	NM_007541	ENSMUSG00000074483	Bglap	BGP|Bglap1|OC|OG1|mOC-A	bone gamma carboxyglutamate protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-17796073-2	chr12	17795978	17796178	+	589.5	f0_c57.idr|f1_balb.idr	Intergenic	Intergenic	105269.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	0.798634062544631	0.684717977676102	0.676496257086573	1.20854208460222	0.931093018587237	1.5788703698168	0.678306405984541	1.39837681160309	1.7617402491454	0.259722872601897	0.760037811092088
Merged-chr11-107321713-4	chr11	107321629	107321829	+	753.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359616, intron 2 of 8)	polypurine|Low_complexity|Low_complexity	-132348.0	NM_001161329	68979.0	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-110771787-2	chr5	110771687	110771887	+	718.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_152254, intron 1 of 1)	ID_B1|SINE|B4	838.0	NR_152254	100504049.0	Mm.474515	NR_152254	ENSMUSG00000086401	Gm15559	-	predicted gene 15559	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-104814305-2	chr14	104814205	104814405	+	729.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_015593, intron 2 of 5)	intron (NR_015593, intron 2 of 5)	175158.0	NR_015593	320249.0	Mm.320725	NR_015593	ENSMUSG00000115432	D130009I18Rik	-	RIKEN cDNA D130009I18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-84163307-3	chr12	84163135	84163335	+	905.75	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163501, intron 3 of 12)	intron (NM_001163501, intron 3 of 12)	-14746.0	NM_027438	70481.0	Mm.444348	NM_027438	ENSMUSG00000054383	Pnma1	5730402C15Rik	paraneoplastic antigen MA1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-108930192-4	chr7	108930071	108930271	+	847.8583369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175532)	promoter-TSS (NM_175532)	-13.0	NM_175532	244202.0	Mm.37991	NM_175532	ENSMUSG00000049709	Nlrp10	6430548I20Rik|Nalp10|Napl10|PAN5|Pynod	NLR family, pyrin domain containing 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-51432802-2	chr6	51432702	51432902	+	787.25	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010903, exon 1 of 4)	5' UTR (NM_010903, exon 1 of 4)	133.0	NM_010903	18025.0	Mm.42138	NM_010903	ENSMUSG00000029832	Nfe2l3	Nrf3	nuclear factor, erythroid derived 2, like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-83830736-4	chr17	83830634	83830834	+	943.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_025325)	TTS (NM_025325)	16056.0	NM_025325	107766.0	Mm.30100	NM_025325	ENSMUSG00000000673	Haao	0610007K21Rik|0610012J07Rik|3-HAO|3-HAOxase|3HAO	3-hydroxyanthranilate 3,4-dioxygenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-68397163-3	chr10	68397119	68397319	+	823.023804	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-76077.0	NR_045357	75148.0	Mm.23505	NR_045357	ENSMUSG00000112157	4930545H06Rik	-	RIKEN cDNA 4930545H06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-104661628-1	chr9	104661528	104661728	+	907.0	f0_balb.idr	intron (NM_028719, intron 1 of 15)	intron (NM_028719, intron 1 of 15)	92145.0	NM_028719	74020.0	Mm.326240	NM_028719	ENSMUSG00000032564	Cpne4	3632411M23Rik|4933406O10Rik	copine IV	protein-coding	2.11707530408604	0.773496918181129	1.71552281454901	0.742343018346216	1.46850745998523	0.777348923400892	0.759988494314898	1.55980280968627	-0.946857773839473	0.528995192421251	0.949464880269839
Merged-chr15-59722609-3	chr15	59722478	59722678	+	875.4285890000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	72381.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56884506-4	chr17	56884396	56884596	+	864.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030141, intron 10 of 13)	PB1D7|SINE|Alu	8863.0	NM_030141	78625.0	Mm.160106	NM_030141	ENSMUSG00000024209	1700061G19Rik	1700026H02|AI507598	RIKEN cDNA 1700061G19 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56270628-2	chr17	56270528	56270728	+	806.333374	f1_balb.idr|f1_c57bl6.idr	exon (NM_174989, exon 2 of 2)	exon (NM_174989, exon 2 of 2)	6139.0	NM_174989	106759.0	Mm.203952	NM_174989	ENSMUSG00000047123	Ticam1	AW046014|AW547018|TICAM-1|TRIF	toll-like receptor adaptor molecule 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180779944-2	chr1	180779844	180780044	+	601.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33661.0	NM_008210	15078.0	Mm.138832	NM_008210	ENSMUSG00000060743	H3f3a	EyeLinc14|H3.3A	H3 histone, family 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-32212644-2	chr19	32212544	32212744	+	553.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 5 of 9)	intron (NM_144792, intron 5 of 9)	-1631.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-64113838-2	chr1	64113738	64113938	+	661.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_033563, intron 1 of 3)	intron (NM_033563, intron 1 of 3)	7551.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-40845123-4	chr4	40845023	40845223	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022305, intron 1 of 5)	intron (NM_022305, intron 1 of 5)	5015.0	NR_039584	100628614.0		NR_039584	ENSMUSG00000096377	Mir5123	mmu-mir-5123|mu-mir-5123	microRNA 5123	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-105923028-3	chr14	105922925	105923125	+	977.305542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26206.0	NM_011897	24064.0	Mm.89982	NM_011897	ENSMUSG00000022114	Spry2	sprouty2	sprouty RTK signaling antagonist 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-57105321-4	chr17	57105237	57105437	+	936.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009404)	promoter-TSS (NM_009404)	-48.0	NM_009404	21950.0	Mm.41171	NM_009404	ENSMUSG00000035678	Tnfsf9	4-1BB-L|4-1BBL|AI848817|Cd137l|Ly63l	tumor necrosis factor (ligand) superfamily, member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45471998-2	chr7	45471898	45472098	+	700.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5100.0	NM_007527	12028.0	Mm.19904	NM_007527	ENSMUSG00000003873	Bax	-	BCL2-associated X protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-59679871-1	chr16	59679771	59679971	+	630.0	f1_balb.idr	intron (NM_007938, intron 15 of 17)	intron (NM_007938, intron 15 of 17)	-40462.0	NM_001347244	56297.0	Mm.392505	NM_019665	ENSMUSG00000022722	Arl6	1110018H24Rik|2210411E14Rik|BBS3	ADP-ribosylation factor-like 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167690674-4	chr2	167690566	167690766	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_110334)	promoter-TSS (NR_110334)	-93.0	NR_110334	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-38846556-1	chr2	38846456	38846656	+	542.0	f1_balb.idr	intron (NM_010264, intron 3 of 10)	intron (NM_010264, intron 3 of 10)	-6179.0	NR_029568	387176.0		NR_029568	ENSMUSG00000065423	Mir181a-2	Mirn181|Mirn181a|Mirn181a-2|miR-181|mir-181a|mir-181a-2	microRNA 181a-2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-124657515-4	chr4	124657399	124657599	+	999.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011141)	promoter-TSS (NM_011141)	-147.0	NM_011141	18991.0	Mm.297371	NM_011141	ENSMUSG00000090125	Pou3f1	Oct-6|Oct6|Otf-6|Otf6|Scip|Test1|Tst-1|Tst1	POU domain, class 3, transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-18978529-2	chr6	18978429	18978629	+	639.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	112211.0	NM_001167757	75196.0	Mm.67665	NM_029202	ENSMUSG00000029517	Ankrd7	4930532L20Rik|AV278427	ankyrin repeat domain 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-34723272-4	chr12	34723164	34723364	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271386, intron 3 of 27)	intron (NM_001271386, intron 3 of 27)	193831.0	NM_001271386	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	3.6157240309285	5.07398590967133	4.99782951208746	4.9440096132419	4.44906593760745	4.94122858518965	4.74830376965562	5.09699149241827	0.0811164299124626	0.838381947087179	0.998431161219273
Merged-chr11-17000577-4	chr11	17000457	17000657	+	926.383301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019549, intron 1 of 9)	intron (NM_019549, intron 1 of 9)	8161.0	NM_019549	56193.0	Mm.98232	NM_019549	ENSMUSG00000020120	Plek	2010300B13Rik	pleckstrin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-87785367-2	chr3	87785267	87785467	+	817.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033124, intron 7 of 16)	intron (NM_001033124, intron 7 of 16)	9795.0	NM_001033124	18211.0	Mm.80682	NM_001033124	ENSMUSG00000028072	Ntrk1	C80751|Tkr|TrkA|trk	neurotrophic tyrosine kinase, receptor, type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-79148873-2	chr15	79148773	79148973	+	599.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027231, intron 3 of 4)	intron (NM_027231, intron 3 of 4)	7548.0	NM_027231	69833.0	Mm.279861	NM_027231	ENSMUSG00000033020	Polr2f	1810060D16Rik|RPB6	polymerase (RNA) II (DNA directed) polypeptide F	protein-coding	-1.32440223303897	-1.29339468673833	-0.717877708899544	-1.31276353204239	-1.32392690786997	-1.29109028300231	-1.30162128075409	-1.31119997543009	-2.49510383040271	0.470258445164311	1
Merged-chr7-84192310-2	chr7	84192210	84192410	+	599.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-40417.0	NM_133722	70178.0	Mm.23914	NM_133722	ENSMUSG00000038459	Abhd17c	2210412D01Rik|AL023007|Fam108c|Fam108c1	abhydrolase domain containing 17C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-35212875-1	chr12	35212775	35212975	+	575.5	f0_balb.idr	Intergenic	Intergenic	-17978.0	NR_030449	751520.0		NR_030449	ENSMUSG00000076253	Mir680-3	Mirn680-3	microRNA 680-3	ncRNA	1.00650320273578	0.724860779464754	0.922486278006994	1.0635186627812	1.88155573919603	0.727837494779634	1.10617003921625	1.5468252056671	1.94981844124262	0.166299791228702	0.631812823040522
Merged-chr16-56771531-3	chr16	56771422	56771622	+	878.9722289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172825, intron 4 of 15)	intron (NM_172825, intron 4 of 15)	24336.0	NM_172825	239853.0	Mm.258979	NM_172825	ENSMUSG00000022755	Adgrg7	9130020O16Rik|Gpr128	adhesion G protein-coupled receptor G7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-54929626-4	chr15	54929490	54929690	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9444.0	NM_001285994	18606.0	Mm.250256	NM_015744	ENSMUSG00000022425	Enpp2	ATX|E-NPP 2|Npps2|PD-Ialpha|Pdnp2|lysoPLD	ectonucleotide pyrophosphatase/phosphodiesterase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80506458-4	chr10	80506365	80506565	+	779.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139226, intron 1 of 1)	intron (NM_139226, intron 1 of 1)	11559.0	NM_139226	246086.0	Mm.250572	NM_139226	ENSMUSG00000045518	Onecut3	OC-3|Oc3	one cut domain, family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-5522146-4	chr11	5522007	5522207	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013842, intron 2 of 4)	intron (NM_013842, intron 2 of 4)	1466.0	NM_001271730	22433.0	Mm.469937	NM_013842	ENSMUSG00000020484	Xbp1	D11Ertd39e|TREB-5|TREB5|XBP-1	X-box binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117862924-2	chr10	117862824	117863024	+	777.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1A|DNA|hAT-Charlie	-16950.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-67778665-3	chr13	67778571	67778771	+	966.75	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR49|LTR|ERVK	-1022.0	NM_028402	72958.0	Mm.53849	NM_028402	ENSMUSG00000090659	Zfp493	2900054J07Rik|Rslcan12	zinc finger protein 493	protein-coding	4.67341237642183	5.28749152179704	4.6694475936824	5.39483000084221	2.37842449194128	2.34114357762631	2.45650519558612	2.35445961124701	-3.84814081892847	4.23858057340018e-12	1.2303505577336e-09
Merged-chr1-172016224-2	chr1	172016124	172016324	+	893.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_033509, intron 1 of 7)	intron (NM_033509, intron 1 of 7)	11071.0	NM_033509	93840.0	Mm.36148	NM_033509	ENSMUSG00000026556	Vangl2	C530001F03Rik|Lootl|Lp|Lpp1|Ltap|Vang1l2|loop-tail|ska17|ska<m17Jus>|stbm|strabismus	VANGL planar cell polarity 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-89204451-4	chr9	89204352	89204552	+	782.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007534, intron 1 of 1)	intron (NM_007534, intron 1 of 1)	5179.0	NM_007534	12045.0	Mm.479217	NM_007534	ENSMUSG00000089929	Bcl2a1b	A1-b	B cell leukemia/lymphoma 2 related protein A1b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21614775-2	chr9	21614675	21614875	+	648.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-1199.0	NR_035496	100316714.0		NR_035496	ENSMUSG00000088478	Mir1946b	mmu-mir-1946b	microRNA 1946b	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-139684744-3	chr7	139684616	139684816	+	918.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302546)	promoter-TSS (NM_001302546)	-901.0	NM_001302546	212124.0	Mm.425507	NM_177212	ENSMUSG00000049571	Cfap46	9330101J02Rik|E030019B06Rik|Gm170|Ttc40	cilia and flagella associated protein 46	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-31224659-3	chr6	31224555	31224755	+	971.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040260, intron 1 of 5)	L2c|LINE|L2	4304.0	NR_040259	73652.0	Mm.441297	NR_040257	ENSMUSG00000087380	2210408F21Rik	-	RIKEN cDNA 2210408F21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-116425507-2	chr3	116425407	116425607	+	820.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1475.0	NM_001173553	229776.0	Mm.17647	NM_001080818	ENSMUSG00000033502	Cdc14a	A830059A17Rik|CDC14A2|CDC14a1|Cdc14	CDC14 cell division cycle 14A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30171632-4	chr2	30171592	30171792	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007931, exon 1 of 3)	exon (NM_007931, exon 1 of 3)	168.0	NM_007931	13804.0	Mm.474473	NM_007931	ENSMUSG00000015337	Endog	-	endonuclease G	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-25588773-4	chr2	25588663	25588863	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024616, intron 7 of 14)	intron (NM_001024616, intron 7 of 14)	-8664.0	NM_001005424	381353.0	Mm.379511	NM_001005424	ENSMUSG00000029419	Gm996	Ajm1	predicted gene 996	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-90813013-2	chr15	90812914	90813114	+	637.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	85462.0	NR_033583	20738.0	Mm.431547	NR_033583	ENSMUSG00000116210	Spn-ps	Cd43-ps	sialophorin, pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69046554-2	chr11	69046454	69046654	+	570.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011496, intron 1 of 7)	intron (NM_011496, intron 1 of 7)	917.0	NM_011496	20877.0	Mm.3488	NM_011496	ENSMUSG00000020897	Aurkb	AIM-1|AIRK2|AL022959|Aik2|Aim1|Ark2|AurB|IPL1|STK-1|Stk12|Stk5	aurora kinase B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-50370721-2	chr6	50370621	50370821	+	829.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163645, intron 2 of 21)	intron (NM_001163645, intron 2 of 21)	12116.0	NM_027881	71720.0	Mm.44153	NM_027881	ENSMUSG00000029822	Osbpl3	1200014M06Rik|6720421I08Rik|A530055M08|ORP-3|ORP3|OSBP3	oxysterol binding protein-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-75191398-6	chr14	75191372	75191572	+	781.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008879, intron 2 of 16)	intron (NM_008879, intron 2 of 16)	-50815.0	NM_019775	56373.0	Mm.24242	NM_019775	ENSMUSG00000021999	Cpb2	1110032P04Rik|4930405E17Rik|AI255929|CPR|Cpu|TAFI	carboxypeptidase B2 (plasma)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-38021457-1	chr19	38021357	38021557	+	1000.0	f0_balb.idr	intron (NM_001302140, intron 3 of 53)	intron (NM_001302140, intron 3 of 53)	22120.0	NM_001099634	226101.0	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding	0.858532716484501	1.1410523466788	0.566726067139011	0.557715777886134	0.719432656617826	1.70375729464142	0.954125179032562	0.918787889022417	1.52137172698402	0.309947859398779	0.810774945581369
Merged-chr7-45471645-2	chr7	45471545	45471745	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4747.0	NM_007527	12028.0	Mm.19904	NM_007527	ENSMUSG00000003873	Bax	-	BCL2-associated X protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-92059784-2	chr17	92059684	92059884	+	570.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	-966982.0	NM_020252	18189.0	Mm.478418	NM_020252	ENSMUSG00000024109	Nrxn1	1700062G21Rik|9330127H16Rik|A230068P09Rik|mKIAA0578	neurexin I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-121130890-2	chr7	121130790	121130990	+	815.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_139310, intron 16 of 28)	(CAAA)n|Simple_repeat|Simple_repeat	47452.0	NM_139310	246190.0	Mm.221073	NM_139310	ENSMUSG00000034990	Otoa	-	otoancorin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-96263839-3	chr10	96263735	96263935	+	971.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37628.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101882472-4	chr7	101882390	101882590	+	969.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291353, intron 1 of 5)	intron (NM_001291353, intron 1 of 5)	1165.0	NM_001291353	75430.0	Mm.284491	NM_027532	ENSMUSG00000030649	Anapc15	3200002M19Rik|6330414C15Rik|APC15	anaphase prompoting complex C subunit 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-41154199-4	chr9	41154094	41154294	+	934.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176860, intron 1 of 13)	intron (NM_176860, intron 1 of 13)	3868.0	NM_176860	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-58393232-4	chr10	58393136	58393336	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201242, intron 1 of 9)	intron (NM_201242, intron 1 of 9)	-1137.0	NM_001193303	110829.0	Mm.57734	NM_026148	ENSMUSG00000019920	Lims1	2310016J22Rik|4921524A02Rik|AI507642|AU021743|AW551584|C430041B13Rik|Lims1l|PINCH|PINCH1	LIM and senescent cell antigen-like domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-84655982-4	chr2	84655887	84656087	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355064, intron 1 of 18)	B1_Mur2|SINE|Alu	2990.0	NM_001355064	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	0.578024445668343	1.54026204346817	2.27240813211662	0.610491683246765	0.823720810965179	0.657237095486364	2.29460330865063	0.61378661033533	-0.332454790265274	0.896646542807815	0.998431161219273
Merged-chr12-9167710-2	chr12	9167610	9167810	+	631.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	137713.0	NM_029321	75516.0	Mm.37581	NM_029321	ENSMUSG00000066637	Ttc32	1700013G20Rik	tetratricopeptide repeat domain 32	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118168450-2	chr11	118168308	118168508	+	864.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001112700, intron 12 of 12)	intron (NM_001112700, intron 12 of 12)	-39189.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-146399842-1	chr2	146399742	146399942	+	627.0	f0_balb.idr	intron (NM_001033348, intron 21 of 40)	intron (NM_001033348, intron 21 of 40)	112162.0	NM_001033348	241694.0	Mm.222310	NM_001033348	ENSMUSG00000037110	Ralgapa2	A230067G21Rik|AS250|BC053994|RGC2|pp250	Ral GTPase activating protein, alpha subunit 2 (catalytic)	protein-coding	0.32942162784507	0.35126558513565	0.919712320193597	0.338604406576473	0.720408361296258	0.352873611020009	0.93111567733677	0.886406400072034	1.36651166218078	0.465893120965737	1
Merged-chr11-3452375-4	chr11	3452266	3452466	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028317)	promoter-TSS (NR_028317)	-71.0	NR_028317	71523.0	Mm.72795	NM_027820	ENSMUSG00000034587	8430429K09Rik	-	RIKEN cDNA 8430429K09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-42352864-2	chr6	42352764	42352964	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289618, intron 4 of 9)	intron (NM_001289618, intron 4 of 9)	3036.0	NM_001289618	22793.0	Mm.282303	NM_011777	ENSMUSG00000029860	Zyx	9530098H06Rik|R75157	zyxin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-12923193-4	chr10	12923093	12923293	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_038027)	promoter-TSS (NR_038027)	-66.0	NR_038028	320273.0	Mm.417706	NR_038027	ENSMUSG00000097378	B230208H11Rik	-	RIKEN cDNA B230208H11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-102646359-6	chr4	102646239	102646439	+	803.986084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56496.0	NM_001177981	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-85154427-2	chr10	85154327	85154527	+	560.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007771, intron 2 of 12)	B3|SINE|B2	-26400.0	NM_028832	74238.0	Mm.255401	NM_028832	ENSMUSG00000049038	Mterf2	1700007D05Rik|Mterfd3	mitochondrial transcription termination factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-107680114-2	chr3	107680014	107680214	+	675.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145542, intron 1 of 16)	intron (NM_145542, intron 1 of 16)	15942.0	NM_001357113	229709.0	Mm.220328	NM_145542	ENSMUSG00000027893	Ahcyl1	1110034F20Rik|AA409031|AA414901|Ahcy-rs3|DCAL|Irbit	S-adenosylhomocysteine hydrolase-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-53783160-3	chr1	53783066	53783266	+	827.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133810, intron 1 of 7)	PB1D9|SINE|Alu	2049.0	NM_133810	98267.0	Mm.25559	NM_133810	ENSMUSG00000026094	Stk17b	3110009A03Rik|AI120141|Drak2	serine/threonine kinase 17b (apoptosis-inducing)	protein-coding	0.534782451067104	0.668628661039274	0.174166550313285	0.169514983419576	0.16294244444465	0.798950557791704	0.505418217073527	0.170327560169314	0.225852354067869	0.909936729439809	1
Merged-chr17-64666100-3	chr17	64666001	64666201	+	729.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008549, intron 6 of 21)	intron (NM_008549, intron 6 of 21)	64452.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-147293212-2	chr5	147293112	147293312	+	571.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9914.0	NR_105854	102465309.0		NR_105854	ENSMUSG00000098687	Mir7k	Gm27814|Mirlet7k|mmu-let-7k	microRNA 7k	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-31465959-1	chr15	31465859	31466059	+	742.0	f0_balb.idr	intron (NM_172606, intron 23 of 25)	intron (NM_172606, intron 23 of 25)	-12270.0	NM_145852	252967.0	Mm.436668	NM_145852	ENSMUSG00000022236	Ropn1l	ASP|AV047578|Akapasp	ropporin 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-103070212-4	chr14	103070136	103070336	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033242)	promoter-TSS (NM_001033242)	20.0	NM_001033242	211286.0	Mm.295289	NM_001033242	ENSMUSG00000022125	Cln5	A730075N08Rik	ceroid-lipofuscinosis, neuronal 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-87504044-6	chr6	87503899	87504099	+	801.611084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037727, intron 1 of 10)	(TC)n|Simple_repeat|Simple_repeat	-7672.0	NM_175476	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-97319788-4	chr1	97319703	97319903	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-191500.0	NM_028942	74441.0	Mm.60362	NM_028942	ENSMUSG00000026331	Slco6c1	4933404A18Rik|C79179	solute carrier organic anion transporter family, member 6c1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-103567120-4	chr2	103567019	103567219	+	869.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_178890, exon 1 of 17)	exon (NM_178890, exon 1 of 17)	809.0	NM_178890	99382.0	Mm.35850	NM_178890	ENSMUSG00000032724	Abtb2	AW539457|BPOZ-2	ankyrin repeat and BTB (POZ) domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-109333326-3	chr4	109333222	109333422	+	823.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007943, intron 12 of 24)	intron (NM_007943, intron 12 of 24)	-9734.0	NM_001159964	13858.0	Mm.318250	NM_007943	ENSMUSG00000028552	Eps15	2410112D09Rik	epidermal growth factor receptor pathway substrate 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-131935959-2	chr2	131935859	131936059	+	652.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001278256, intron 3 of 3)	intron (NM_001278256, intron 3 of 3)	-14902.0	NM_001278257	26434.0	Mm.180750	NM_023043	ENSMUSG00000027338	Prnd	AI450264|Dpl|PrPLP|doppel	prion like protein doppel	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47761150-2	chr17	47761050	47761250	+	937.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161723, intron 1 of 8)	intron (NM_001161723, intron 1 of 8)	23219.0	NM_001161723	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97412689-2	chr6	97412553	97412753	+	623.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 4 of 23)	L1MC|LINE|L1	46633.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-99130278-3	chr6	99130158	99130358	+	797.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053202, intron 4 of 18)	intron (NM_053202, intron 4 of 18)	-101960.0	NM_001197322	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-86216643-3	chr1	86216541	86216741	+	705.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027456, intron 19 of 20)	intron (NM_027456, intron 19 of 20)	61861.0	NM_001310702	78795.0	Mm.379264	NM_027456	ENSMUSG00000062590	Armc9	3830422A13Rik|4831423D23Rik|4930438O05Rik|5730415N24Rik	armadillo repeat containing 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-35591929-3	chr8	35591788	35591988	+	921.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081279, intron 1 of 2)	intron (NM_001081279, intron 1 of 2)	-2868.0	NR_040376	100504714.0	Mm.381744	NR_040376	ENSMUSG00000097357	Gm16793	-	predicted gene, 16793	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-20699531-3	chr18	20699423	20699623	+	763.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019737, intron 5 of 8)	intron (NM_019737, intron 5 of 8)	-34263.0	NR_155534	102633478.0		NR_155534	ENSMUSG00000085595	Gm16090	-	predicted gene 16090	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95994010-4	chr3	95993909	95994109	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023320, intron 2 of 5)	intron (NM_023320, intron 2 of 5)	1830.0	NM_023320	67220.0	Mm.458147	NM_023320	ENSMUSG00000015745	Plekho1	2810052M02Rik|CKIP-1|Ckip1|JZA-20|Jza2	pleckstrin homology domain containing, family O member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-49888370-4	chr16	49888281	49888481	+	936.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010581, intron 4 of 9)	Tigger6a|DNA|TcMar-Tigger	32727.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-126695538-4	chr3	126695439	126695639	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025438, intron 3 of 18)	intron (NM_001025438, intron 3 of 18)	98588.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-57715443-2	chr10	57715343	57715543	+	889.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008863, intron 4 of 5)	intron (NM_008863, intron 4 of 5)	64462.0	NM_001190402	18768.0	Mm.262135	NM_008863	ENSMUSG00000019876	Pkib	Pkibeta|Prkacn2	protein kinase inhibitor beta, cAMP dependent, testis specific	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-35718281-2	chr5	35718193	35718393	+	556.0	f0_balb.idr|f1_balb.idr	exon (NM_194344, exon 5 of 18)	exon (NM_194344, exon 5 of 18)	10983.0	NM_194344	231147.0	Mm.290429	NM_194344	ENSMUSG00000036553	Sh3tc1	4631428G15|BC024909	SH3 domain and tetratricopeptide repeats 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-164681686-4	chr2	164681584	164681784	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4|LINE|L1	-3423.0	NM_001012704	408190.0	Mm.376205	NM_001012704	ENSMUSG00000067704	Wfdc13	Wfdc13l1	WAP four-disulfide core domain 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-181246680-5	chr1	181246619	181246819	+	791.41333	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	-34741.0	NM_145514	226757.0	Mm.289082	NM_145514	ENSMUSG00000038733	Wdr26	1600024A01Rik|AA693241|AI447817|AU044014|C77982|Gid7	WD repeat domain 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-79256310-2	chr11	79256210	79256410	+	717.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1615.0	NM_019653	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-80126413-2	chr12	80126313	80126513	+	869.416626	f1_balb.idr|f1_c57bl6.idr	intron (NR_033514, intron 2 of 2)	intron (NR_033514, intron 2 of 2)	6431.0	NR_033514	69548.0	Mm.269712	NR_033514		2310015A10Rik	5330419I17Rik	RIKEN cDNA 2310015A10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19678330-2	chr7	19678230	19678430	+	591.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001277944)	promoter-TSS (NM_001277944)	-389.0	NM_001277944	11813.0	Mm.28394	NM_001277944	ENSMUSG00000002992	Apoc2	apo-CII|apoC-II	apolipoprotein C-II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-19310232-4	chr3	19310151	19310351	+	973.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122759, intron 1 of 12)	intron (NM_001122759, intron 1 of 12)	1071.0	NM_001122759	18583.0	Mm.355614	NM_008802	ENSMUSG00000069094	Pde7a	AU015378|AW047537	phosphodiesterase 7A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-95929779-4	chr16	95929718	95929918	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040484)	promoter-TSS (NR_040484)	-741.0	NR_040484	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-100999155-3	chr3	100999063	100999263	+	867.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167906, intron 8 of 8)	intron (NM_001167906, intron 8 of 8)	-29500.0	NM_001013026	74044.0	Mm.270961	NM_001013026	ENSMUSG00000033222	Ttf2	4632434F22Rik|8030447N19|AV218430	transcription termination factor, RNA polymerase II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-48532903-4	chr9	48532789	48532989	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	37546.0	NM_001004191	434402.0	Mm.386950	NM_001004191	ENSMUSG00000042293	Gm5617	EG434402	predicted gene 5617	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-45263281-6	chr9	45263179	45263379	+	653.944458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_136903, intron 4 of 5)	B4A|SINE|B4	3428.0	NR_106054	102466803.0		NR_106054	ENSMUSG00000098361	Mir7086	Gm27643|mmu-mir-7086	microRNA 7086	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-90735896-2	chr6	90735796	90735996	+	618.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356440, intron 1 of 13)	intron (NM_001356440, intron 1 of 13)	-19367.0	NM_001134383	232227.0	Mm.196943	NM_182784	ENSMUSG00000034312	Iqsec1	AW561907|BC026481|BRAG2|D6Ertd349e|cI-43	IQ motif and Sec7 domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-153895182-4	chr1	153895093	153895293	+	743.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3547.0	NM_178244	240819.0	Mm.453236	NM_178244	ENSMUSG00000047053	Teddm1a	Epdd1|Teddm1|e9-1	transmembrane epididymal protein 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69365791-2	chr11	69365691	69365891	+	684.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146019, intron 1 of 39)	intron (NM_146019, intron 1 of 39)	3635.0	NM_146019	216848.0	Mm.178246	NM_146019	ENSMUSG00000018474	Chd3	2600010P09Rik|AF020312|Chd7|Prp7|Prp9-1	chromodomain helicase DNA binding protein 3	protein-coding	0.922546216314645	2.00611036030568	0.761648890773711	1.30938067638737	0.929806175055939	2.02426803307651	0.765654615761778	1.31734650984454	0.0371401979229859	0.978315533449174	0.998431161219273
Merged-chr13-81239045-2	chr13	81238945	81239145	+	570.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 85 of 89)	intron (NM_054053, intron 85 of 89)	274971.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-84682038-4	chr18	84681938	84682138	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289531)	promoter-TSS (NM_001289531)	21.0	NM_001289531	66054.0	Mm.29646	NM_023149	ENSMUSG00000024644	Cndp2	0610010E05Rik|C76600|Cn2|Dip-2|Pep-1|Pep1	CNDP dipeptidase 2 (metallopeptidase M20 family)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-121570331-2	chr3	121570231	121570431	+	571.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37987.0	NM_145394	213603.0	Mm.33062	NM_145394	ENSMUSG00000039865	Slc44a3	BC010552	solute carrier family 44, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72155246-4	chr6	72155086	72155286	+	836.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011375)	TTS (NM_011375)	-31989.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-47841364-3	chr19	47841261	47841461	+	911.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	-4000.0	NM_027559	100048534.0	Mm.29457	NM_027559	ENSMUSG00000044948	Cfap43	4632415N18Rik|4930428C11Rik|4930463G05Rik|AI429486|D19Ertd652e|Wdr96	cilia and flagella associated protein 43	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-34255192-4	chr8	34255103	34255303	+	909.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-88491.0	NR_105820	102465211.0		NR_105820	ENSMUSG00000098785	Mir6395	Gm27561|mmu-mir-6395	microRNA 6395	ncRNA	2.71270533634797	1.87691488072956	3.24635419679433	2.55814927981294	2.64744059452605	2.8564489373165	2.65141081211328	2.77883483639984	0.070169454661715	0.924884009630347	0.998431161219273
Merged-chr4-147337031-2	chr4	147336931	147337131	+	973.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039209, intron 1 of 2)	L1_Mus1|LINE|L1	161165.0	NM_001039209	195531.0	Mm.270762	NM_001039209	ENSMUSG00000078496	Zfp982	Gm13152	zinc finger protein 982	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-148449150-4	chr4	148449024	148449224	+	798.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020009, intron 1 of 57)	intron (NM_020009, intron 1 of 57)	542.0	NM_020009	56717.0	Mm.21158	NM_020009	ENSMUSG00000028991	Mtor	2610315D21Rik|AI327068|FRAP|FRAP2|Frap1|RAFT1|RAPT1|flat	mechanistic target of rapamycin kinase	protein-coding	1.86767981899164	0.984374191650738	2.90812004466628	1.19088836339906	2.16946597962933	0.990754110578736	2.18485851014082	0.935918908268329	-0.646862582550893	0.610305418440893	0.975181810684084
Merged-chr2-145372314-2	chr2	145372214	145372414	+	557.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_053195, intron 2 of 16)	intron (NM_053195, intron 2 of 16)	129703.0	NM_053195	94249.0	Mm.217171	NM_053195	ENSMUSG00000063873	Slc24a3	NCKX3	solute carrier family 24 (sodium/potassium/calcium exchanger), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-60740578-4	chr18	60740489	60740689	+	880.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001348146, intron 1 of 6)	intron (NM_001348146, intron 1 of 6)	6157.0	NM_001348101	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	3.69222287568875	3.98719690406116	3.92523644283253	3.27533787509435	3.72171682581598	4.01491383178613	3.95423894260244	3.29265898888858	0.0386285502257883	0.93789706249786	0.998431161219273
Merged-chr11-87020524-2	chr11	87020424	87020624	+	948.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26762.0	NM_001005341	77864.0	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-15025526-2	chr6	15025426	15025626	+	572.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_053242, intron 2 of 18)	Lx3A|LINE|L1	124177.0	NM_053242	114142.0	Mm.332919	NM_053242	ENSMUSG00000029563	Foxp2	2810043D05Rik|AI449000|CAG-16|D0Kist7	forkhead box P2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-93268524-4	chr10	93268435	93268635	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001322265, intron 2 of 4)	L1MB3|LINE|L1	42624.0	NM_001322268	13713.0	Mm.4454	NM_013508	ENSMUSG00000008398	Elk3	D430049E23Rik|Erp|Etrp|Net|Sap-2	ELK3, member of ETS oncogene family	protein-coding	2.3580252700697	2.08825017608781	2.87011193862808	1.18658343263378	1.56556418727887	1.75369623686367	2.6733530684732	1.64368240374024	-0.613021689874242	0.548409965869409	0.958226617063277
Merged-chr15-38472341-3	chr15	38472254	38472454	+	889.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18193.0	NR_105916	102465574.0		NR_105916	ENSMUSG00000099110	Mir6951	Gm27765|mmu-mir-6951	microRNA 6951	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-117417619-4	chr5	117417527	117417727	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001312914, intron 1 of 19)	intron (NM_001312914, intron 1 of 19)	3625.0	NM_001312914	333050.0	Mm.437947	NM_001034873	ENSMUSG00000061578	Ksr2	-	kinase suppressor of ras 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-91661094-3	chr15	91661002	91661202	+	733.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12122.0	NM_025730	66725.0	Mm.37558	NM_025730	ENSMUSG00000036273	Lrrk2	4921513O20Rik|9330188B09Rik|AW561911|D630001M17Rik|Gm927|cI-46	leucine-rich repeat kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-23430932-4	chr13	23430826	23431026	+	985.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015492)	promoter-TSS (NR_015492)	91.0	NR_015492	320842.0	Mm.487476	NR_015492	ENSMUSG00000085024	C230035I16Rik	-	RIKEN cDNA C230035I16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-48779708-3	chr11	48779637	48779837	+	763.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-20623.0	NM_008143	14694.0	Mm.5305	NM_008143	ENSMUSG00000020372	Rack1	AL033335|GB-like|Gnb2-rs1|Gnb2l1|p205	receptor for activated C kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-137114506-4	chr2	137114446	137114646	+	847.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013822, intron 2 of 25)	CpG	1974.0	NM_013822	16449.0	Mm.22398	NM_013822	ENSMUSG00000027276	Jag1	ABE2|Gsfabe2|Htu|Ozz|Ser-1	jagged 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-45953739-3	chr17	45953642	45953842	+	945.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	71421.0	NM_001110267	22339.0	Mm.282184	NM_009505	ENSMUSG00000023951	Vegfa	Vegf|Vpf	vascular endothelial growth factor A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-76053751-4	chr16	76053632	76053832	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52948.0	NR_155447	102632240.0	Mm.417237	NR_155447	ENSMUSG00000087214	Gm15555	-	predicted gene 15555	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-141084929-4	chr5	141084810	141085010	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-84314.0	NM_175362	108723.0	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	3.52149961086617	4.25460342974855	4.27314900714331	3.90019510409867	3.55105743647527	2.79768740012922	2.06525778819206	4.31667134810467	-0.80052241890958	0.190749461943377	0.669546561020494
Merged-chr10-89599886-1	chr10	89599786	89599986	+	816.0	f1_balb.idr	promoter-TSS (NM_001310710)	promoter-TSS (NM_001310710)	-71.0	NM_001310710	216227.0	Mm.233921	NM_182959	ENSMUSG00000019935	Slc17a8	BC042593|Vglut3	solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 8	protein-coding	1.97386240413759	3.35515045885424	3.86057296773885	3.14994906575411	2.33686008688202	3.55164469392588	3.51206258319478	3.07435611751405	-0.078915468526022	0.909662622584287	0.998431161219273
Merged-chr3-75277650-4	chr3	75277562	75277762	+	966.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-7584.0	NM_026460	67931.0	Mm.259446	NM_026460	ENSMUSG00000034139	Serpini2	Spi14	serine (or cysteine) peptidase inhibitor, clade I, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-146672509-1	chr6	146672409	146672609	+	767.0	f1_c57bl6.idr	Intergenic	Intergenic	15291.0	NR_046277	74925.0	Mm.386304	NR_046277	ENSMUSG00000085238	4930479D17Rik	-	RIKEN cDNA 4930479D17 gene	ncRNA	0.379503885952126	0.557666736720358	-0.184322532720627	-0.188255467116921	-0.0427997638185022	-0.178086847855912	-0.183199224594532	-0.187567992451559	-3.01029854946154	0.19973850085537	1
Merged-chr12-76191166-4	chr12	76191070	76191270	+	891.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13911.0	NR_104386	13983.0	Mm.2561	NM_010157	ENSMUSG00000021055	Esr2	ER[b]|ERbeta|Estrb	estrogen receptor 2 (beta)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-76473868-1	chr12	76473768	76473968	+	714.0	f0_balb.idr	Intergenic	Intergenic	29371.0	NR_028520	100041694.0	Mm.259350	NR_028520	ENSMUSG00000073000	Gm10451	-	predicted gene 10451	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-14852426-2	chr19	14852326	14852526	+	721.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD-int|LTR|ERVL-MaLR	-254243.0	NM_001302947	21888.0	Mm.103638	NM_011600	ENSMUSG00000024642	Tle4	5730411M05Rik|AA792082|Bce-1|Bce1|ESTM13|ESTM14|Grg4|X83332|X83333|grg-4	transducin-like enhancer of split 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140624783-2	chr5	140624683	140624883	+	688.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001308040, intron 12 of 12)	intron (NM_001308040, intron 12 of 12)	17442.0	NM_008494	16848.0	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-132009277-2	chr1	132009177	132009377	+	903.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_007923, intron 1 of 4)	intron (NM_007923, intron 1 of 4)	1672.0	NM_007923	13714.0	Mm.254233	NM_007923	ENSMUSG00000026436	Elk4	2310011G17Rik|A130026I01Rik|BB162516|SAP-1|Sap1	ELK4, member of ETS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-52937903-2	chr2	52937803	52938003	+	867.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	80035.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-16079243-4	chr1	16079135	16079335	+	793.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305227, intron 3 of 5)	intron (NM_001305227, intron 3 of 5)	14090.0	NM_001243238	75799.0	Mm.78557	NM_001243238	ENSMUSG00000067795	4930444P10Rik	-	RIKEN cDNA 4930444P10 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-88429101-2	chr7	88429001	88429201	+	638.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	-1172.0	NM_028238	72433.0	Mm.276669	NM_028238	ENSMUSG00000030559	Rab38	2310011F14Rik|AU043391|cht	RAB38, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-38864211-4	chr12	38864176	38864376	+	980.2777710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347379, intron 11 of 11)	intron (NM_001347379, intron 11 of 11)	80565.0	NM_001163154	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99184921-2	chr7	99184750	99184950	+	734.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2137.0	NM_026384	67800.0	Mm.180189	NM_026384	ENSMUSG00000030747	Dgat2	0610010B06Rik|ARAT|DGAT-2	diacylglycerol O-acyltransferase 2	protein-coding	2.30755121580658	1.89195878821788	2.27884962764654	2.52175949341602	2.22986296008833	1.69266356448222	2.16600681129227	2.84119355084612	0.090916476943024	0.916900661466759	0.998431161219273
Merged-chr2-152691633-2	chr2	152691533	152691733	+	615.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010376, intron 7 of 11)	intron (NM_010376, intron 7 of 11)	4485.0	NM_025543	66405.0	Mm.440291	NM_025543	ENSMUSG00000042814	Mcts2	2400002F11Rik|MCT-2	malignant T cell amplified sequence 2	protein-coding	1.05557028879443	0.39238991277187	0.380393227800584	1.64665370681192	0.357334759729716	0.395059479210629	1.21255801391567	0.372617435840387	-1.43814127449947	0.4380054795781	0.908612234382228
Merged-chr5-103678333-4	chr5	103678221	103678421	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22589.0	NM_001163550	74218.0	Mm.159141	NM_028824	ENSMUSG00000029320	1700016H13Rik	-	RIKEN cDNA 1700016H13 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-41525153-4	chr5	41525052	41525252	+	907.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR16B_MM|LTR|ERVK	182539.0	NM_001310592	100972.0	Mm.41555	NM_027295	ENSMUSG00000029128	Rab28	2700023P08Rik|AW496496	RAB28, member RAS oncogene family	protein-coding	-1.58994551673671	-1.55912852307891	-1.56844783632235	-1.57610299769523	-1.18549093183599	-1.55710898902261	-1.56633814807757	-1.57473272746952	1.78703309985663	0.610309988231842	1
Merged-chr12-111454226-3	chr12	111454150	111454350	+	709.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009396, exon 12 of 12)	3' UTR (NM_009396, exon 12 of 12)	11589.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101708641-4	chr11	101708530	101708730	+	955.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24326.0	NM_144831	217207.0	Mm.28186	NM_144831	ENSMUSG00000034931	Dhx8	Ddx8|mDEAH6|mKIAA4096	DEAH (Asp-Glu-Ala-His) box polypeptide 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-34198545-4	chr7	34198435	34198635	+	961.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-1865.0	NM_001360710	68079.0	Mm.38173	NM_026549	ENSMUSG00000002635	Pdcd2l	6030457N17Rik	programmed cell death 2-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41337046-4	chr19	41336925	41337125	+	841.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 2 of 16)	intron (NM_031376, intron 2 of 16)	48045.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	3.04198165235528	2.97625030833108	2.87575858094173	2.79425815464708	2.99806309364154	3.35305224323637	1.5494806145409	2.16896658967056	-0.397847291242437	0.611038609928639	0.975334764473647
Merged-chr17-84204297-3	chr17	84204202	84204402	+	757.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183021, intron 36 of 37)	ORR1D2|LTR|ERVL-MaLR	-16355.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-27922383-4	chr15	27922270	27922470	+	998.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081302, intron 1 of 56)	intron (NM_001081302, intron 1 of 56)	103478.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-20651671-4	chr16	20651587	20651787	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027485)	promoter-TSS (NR_027485)	35.0	NM_134101	21762.0	Mm.243234	NM_134101	ENSMUSG00000006998	Psmd2	9430095H01Rik|AA407121|TEG-190|Tex190	proteasome (prosome, macropain) 26S subunit, non-ATPase, 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91604481-2	chr16	91604380	91604580	+	901.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-6800.0	NM_030018	77975.0	Mm.290341	NM_030018	ENSMUSG00000022964	Tmem50b	AU015466|AU019872|B230114J08Rik	transmembrane protein 50B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-83221915-3	chr15	83221830	83222030	+	884.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29801.0	NM_001170954	239559.0	Mm.323805	NM_001004150	ENSMUSG00000047878	A4galt	-	alpha 1,4-galactosyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-103332472-2	chr12	103332302	103332502	+	731.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_023049, intron 6 of 9)	MIRb|SINE|MIR	17443.0	NM_001195726	100504156.0	Mm.425749	NM_001195726	ENSMUSG00000096753	Fam181a	EG544888	family with sequence similarity 181, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-32735461-4	chr12	32735349	32735549	+	972.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	FordPrefect|DNA|hAT-Tip100	-84886.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-116175898-4	chr4	116175800	116176000	+	955.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	2528.0	NM_001099295	67323.0	Mm.45442	NM_001099295	ENSMUSG00000078593	1700042G07Rik	-	RIKEN cDNA 1700042G07 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-152448796-4	chr4	152448697	152448897	+	938.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252655)	promoter-TSS (NM_001252655)	58.0	NM_001252655	16498.0	Mm.388924	NM_010598	ENSMUSG00000028931	Kcnab2	F5|I2rf5|Kcnb3|kv-beta-2	potassium voltage-gated channel, shaker-related subfamily, beta member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-126813222-1	chr10	126813122	126813322	+	547.0	f1_c57bl6.idr	Intergenic	Intergenic	-19512.0	NR_131015	75813.0	Mm.159583	NR_131015	ENSMUSG00000112832	4930484H19Rik	-	RIKEN cDNA 4930484H19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-34255414-4	chr13	34255317	34255517	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033167, intron 3 of 10)	intron (NM_001033167, intron 3 of 10)	89765.0	NM_001033167	73102.0	Mm.23932	NM_001033167	ENSMUSG00000038267	Slc22a23	3110004L20Rik	solute carrier family 22, member 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-136464475-3	chr5	136464386	136464586	+	756.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291238, intron 2 of 22)	L3|LINE|CR1	-88683.0	NR_030500	723975.0		NR_030500	ENSMUSG00000106479	Mir721	Mirn721|miRY|mir-721|mmu-mir-721	microRNA 721	ncRNA	-0.151591052260365	-0.130940799197888	0.714739633291343	-0.142844897156857	-0.150282248982373	-0.12944136653855	0.729351554324659	-0.141931488452262	0.041083046276385	0.986412301813541	1
Merged-chr14-30579991-3	chr14	30579880	30580080	+	943.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7831.0	NR_037237	100526475.0		NR_037237	ENSMUSG00000093156	Mir3076	mir-3076|mmu-mir-3076	microRNA 3076	ncRNA	4.46116988433956	3.72761755176964	3.96737369735754	5.43264503875169	3.04855899892119	2.57462790179803	2.00116356034279	3.59042288812818	-2.28848823485514	0.000139437988353053	0.0040345104122024
Merged-chr4-138283014-4	chr4	138282924	138283124	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001190978, intron 6 of 11)	intron (NM_001190978, intron 6 of 11)	20773.0	NM_010623	16559.0	Mm.271936	NM_010623	ENSMUSG00000028758	Kif17	5930435E01Rik|AW492270|Kif17b|mKIAA1405	kinesin family member 17	protein-coding	4.63191251060771	4.79755599491014	4.73968816997966	3.88975646768487	5.03581289864095	4.7322823577875	4.18021891922982	5.0755265318316	0.310220492028747	0.421545254580828	0.900322118218157
Merged-chr18-36693562-2	chr18	36693462	36693662	+	823.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_172831, intron 3 of 12)	Lx4A|LINE|L1	2363.0	NM_172831	240216.0	Mm.252323	NM_172831	ENSMUSG00000044719	E230025N22Rik	EG240216	Riken cDNA E230025N22 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-46060534-2	chr11	46060434	46060634	+	960.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009616, intron 1 of 22)	L2a|LINE|L2	4550.0	NM_001291891	11492.0	Mm.89940	NM_009616	ENSMUSG00000011256	Adam19	AL024287|MADDAM|MTLNB|Mltnb	a disintegrin and metallopeptidase domain 19 (meltrin beta)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-112921199-2	chr10	112921099	112921299	+	557.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7827.0	NM_001033474	382423.0	Mm.431239	NM_001033474	ENSMUSG00000074748	Atxn7l3b	4921506J03Rik|6230409E21Rik|AI315132	ataxin 7-like 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123863208-4	chr5	123863090	123863290	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_030701)	TTS (NM_030701)	2326.0	NM_030701	80885.0	Mm.440567	NM_030701	ENSMUSG00000045502	Hcar2	Gpr109a|Gpr109b|HM74|Niacr1|PUMA-G|Pumag|mHM74b	hydroxycarboxylic acid receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-60409571-4	chr1	60409474	60409674	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001198571)	promoter-TSS (NM_001198571)	-45.0	NM_001198571	329165.0	Mm.212066	NM_198127	ENSMUSG00000026782	Abi2	8430425M24Rik|AI839867|C130078H13	abl-interactor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-56129717-3	chr13	56129615	56129815	+	890.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159513, intron 1 of 8)	MLT1J2|LTR|ERVL-MaLR	5835.0	NM_012015	26914.0	Mm.283802	NM_012015	ENSMUSG00000015937	H2afy	H2AF12M|mH2a1|macroH2A1	H2A histone family, member Y	protein-coding	-0.363512973922844	-0.506156183089941	-0.317788004081023	-0.514243029132783	-0.519253193469438	0.381036821572213	-0.509706173398814	-0.513625430821078	1.91934735065562	0.451354591574989	1
Merged-chr2-11299529-4	chr2	11299389	11299589	+	939.7666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008859, intron 17 of 17)	intron (NM_008859, intron 17 of 17)	-40000.0	NR_040369	100503147.0	Mm.91961	NR_040369	ENSMUSG00000086006	Gm13293	-	predicted gene 13293	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-19924348-4	chr11	19924242	19924442	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033523)	promoter-TSS (NM_033523)	-100.0	NM_033523	114716.0	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding	4.25347128271119	4.94868259952617	5.05049965540548	3.0381612512868	4.53432346634229	4.85587757560584	4.62104450609132	3.41029931437788	-0.0857733076845685	0.864528515152062	0.998431161219273
Merged-chr5-135397131-3	chr5	135397032	135397232	+	743.56665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-2586.0	NM_148932	107939.0	Mm.28399	NM_148932	ENSMUSG00000053293	Pom121	2610027A18Rik|C80273|mKIAA0618	nuclear pore membrane protein 121	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-8871801-2	chr10	8871701	8871901	+	880.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 1 of 19)	intron (NM_175155, intron 1 of 19)	14269.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-16669931-4	chr11	16669843	16670043	+	909.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-82260.0	NM_207655	13649.0	Mm.8534	NM_007912	ENSMUSG00000020122	Egfr	9030024J15Rik|AI552599|Erbb|Errb1|Errp|Wa5|wa-2|wa2	epidermal growth factor receptor	protein-coding	3.09092914865663	1.97469918535858	2.25670074770279	2.56263367091201	2.79457757287172	2.18667142986364	1.4240543597575	3.37937258320953	0.208827806456023	0.813809154618477	0.998431161219273
Merged-chr17-47522659-1	chr17	47522559	47522759	+	931.0	f0_balb.idr	intron (NM_001081635, intron 1 of 6)	intron (NM_001081635, intron 1 of 6)	17608.0	NM_001081635	12445.0	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5631225-3	chr19	5631138	5631338	+	647.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MurERV4-int|LTR|ERVK	-6252.0	NM_009045	19697.0	Mm.249966	NM_009045	ENSMUSG00000024927	Rela	p65	v-rel reticuloendotheliosis viral oncogene homolog A (avian)	protein-coding	2.51145699775967	1.43871812739857	1.39580550095145	2.83136204127386	3.1060231255571	2.34288826813571	2.64867203746066	3.20075226514288	1.30548667988332	0.145568593565853	0.596088820736383
Merged-chr2-35162366-3	chr2	35162264	35162464	+	832.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012018, intron 30 of 43)	intron (NM_012018, intron 30 of 43)	30130.0	NM_001290635	26920.0	Mm.231332	NM_012018	ENSMUSG00000057110	Cntrl	6720467O09Rik|AA968343|Cep1|Cep110|IB3/5|Ma2a8|b2b1468.1Clo|b2b1468Clo	centriolin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-24409409-4	chr2	24409287	24409487	+	934.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_177611)	TTS (NM_177611)	22771.0	NM_001355232	215632.0	Mm.490434	NM_177611	ENSMUSG00000026979	Psd4	BC046518|EFA6B	pleckstrin and Sec7 domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-79284187-4	chr18	79284060	79284260	+	984.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-174769.0	NM_053099	240427.0	Mm.312871	NM_053099	ENSMUSG00000024548	Setbp1	C130092E12|Seb|mKIAA0437	SET binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36483355-3	chr18	36483249	36483449	+	932.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-28854.0	NM_026027	67199.0	Mm.30184	NM_026027	ENSMUSG00000024346	Pfdn1	2700086I23Rik|AA408327|AU044714	prefoldin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-106797548-4	chr1	106797493	106797693	+	904.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009190)	promoter-TSS (NM_009190)	-868.0	NM_009190	20479.0	Mm.18705	NM_009190	ENSMUSG00000009907	Vps4b	8030489C12Rik|Skd1	vacuolar protein sorting 4B	protein-coding	1.65569437864046	0.791976141730628	1.647053888346	1.12432874123295	1.51085928435926	0.794981886790233	1.3153450534807	0.769802558268167	-0.820165417226834	0.570566033804593	0.962718661854691
Merged-chr1-153931415-1	chr1	153931315	153931515	+	623.0	f0_balb.idr	Intergenic	Lx7|LINE|L1	31486.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59819330-4	chr15	59819193	59819393	+	989.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24334.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	0.996885728174109	1.88935211252812	0.837168369604514	0.821856020286771	1.99253693514875	1.50461951317976	0.841476433489982	2.03480129823729	1.43530386883112	0.29685057978581	0.800117757751872
Merged-chr19-61229144-4	chr19	61229031	61229231	+	917.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009970)	promoter-TSS (NM_009970)	-713.0	NM_009970	12982.0	Mm.287228	NM_009970	ENSMUSG00000059326	Csf2ra	CD116|Csfgmra|GM-CSF-Ra|GM-CSFR	colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-128437893-4	chr6	128437789	128437989	+	996.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028592)	promoter-TSS (NR_028592)	767.0	NM_010219	14228.0	Mm.12758	NM_010219	ENSMUSG00000030357	Fkbp4	AL022792|AW208983|FKBP-4|FKBP-52|FKBP52|FKPB52|p59	FK506 binding protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-137879788-4	chr4	137879645	137879845	+	966.9166869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199307, intron 1 of 19)	intron (NM_199307, intron 1 of 19)	17508.0	NM_199307	230857.0	Mm.401062	NM_199307	ENSMUSG00000057530	Ece1	AW322500|ECE-1|ECE-1a|ECE-1b|ECE-1d	endothelin converting enzyme 1	protein-coding	1.35425389728935	1.66304597406776	2.00549465726348	1.55374228627803	0.89462786114784	1.53596769543702	0.929780633451307	1.43531931174044	-1.59413995631098	0.205510874402159	0.693007158818748
Merged-chr1-132314051-2	chr1	132313951	132314151	+	798.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2074.0	NM_001195025	74137.0	Mm.100666	NM_028778	ENSMUSG00000009772	Nuak2	1200013B22Rik|Omphk2|Snark|mKIAA0537	NUAK family, SNF1-like kinase, 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-115236442-4	chr9	115236365	115236565	+	956.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45605.0	NR_029430	111186.0	Mm.484753	NR_029430		Stmn1-rs1	Lag-rs1|Lap18-rs1	stathmin 1, related sequence 1	pseudo	1.98727006106491	1.07489093467506	0.626230768010764	1.27282238596953	0.788282027366051	0.643500502746101	0.62937446615848	1.28130315951701	-1.92585978345103	0.204238663119706	0.69167790036705
Merged-chr11-73138336-4	chr11	73138246	73138446	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010353)	promoter-TSS (NM_010353)	-52.0	NM_010353	14841.0	Mm.42045	NM_010353	ENSMUSG00000050107	Haspin	Gsg2	histone H3 associated protein kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-72204733-4	chr5	72204648	72204848	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_003966, intron 1 of 22)	intron (NR_003966, intron 1 of 22)	1405.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-4115405-2	chr8	4115319	4115519	+	585.0	f0_balb.idr|f1_balb.idr	Intergenic	L1M4|LINE|L1	-9655.0	NM_026956	69142.0	Mm.171061	NM_026956	ENSMUSG00000051906	Cd209f	1810029C22Rik|AI647041|SIGNR8	CD209f antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-72373068-1	chr2	72372968	72373168	+	706.0	f0_c57.idr	intron (NM_023057, intron 7 of 19)	intron (NM_023057, intron 7 of 19)	87367.0	NM_178084	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-76974168-2	chr5	76974068	76974268	+	934.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025691)	promoter-TSS (NM_025691)	-533.0	NM_025691	66661.0	Mm.296976	NM_025691	ENSMUSG00000036323	Srp72	5730576P14Rik|72kDa|AI132477|BC019196|C77589	signal recognition particle 72	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127041294-6	chr10	127041141	127041341	+	883.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010792)	promoter-TSS (NM_010792)	153.0	NM_001205036	100504608.0	Mm.486142	NM_001205036	ENSMUSG00000080115	Mettl21b	Fam119b|eef1akmt3	methyltransferase like 21B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-91869506-3	chr12	91869386	91869586	+	870.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20329.0	NM_011344	20338.0	Mm.250605	NM_011344	ENSMUSG00000020964	Sel1l	AW493766|Sel1h|mKIAA4137	sel-1 suppressor of lin-12-like (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19360088-4	chr7	19359984	19360184	+	994.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145822)	promoter-TSS (NM_145822)	-601.0	NM_145822	70333.0	Mm.171370	NM_145822	ENSMUSG00000047649	Cd3eap	1190028F09|2610103M17Rik|ASE-1|Ase1|CAST|PAF49	CD3E antigen, epsilon polypeptide associated protein	protein-coding	1.81631138151321	1.72066251087124	0.921721750426155	2.312876072619	1.08575856387844	1.20259277695364	0.926232911819587	1.84173011907962	-1.46168898195772	0.248450011413762	0.74758343357745
Merged-chr6-136659456-4	chr6	136659354	136659554	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025806, intron 1 of 10)	intron (NM_025806, intron 1 of 10)	2439.0	NM_025806	66857.0	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	5.38501241321631	6.00570521885236	6.30821082161829	6.23494654509782	6.086045354171	6.42675490382445	6.16967480159261	5.83866801281207	0.131868481832443	0.606979795157755	0.974576632476413
Merged-chr5-100569521-4	chr5	100569419	100569619	+	817.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139198, intron 1 of 4)	intron (NM_139198, intron 1 of 4)	2686.0	NM_139198	231507.0	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-67360599-4	chr13	67360513	67360713	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001038651)	promoter-TSS (NM_001038651)	-41.0	NM_001038651	629016.0	Mm.440800	NM_001038651	ENSMUSG00000098905	Zfp953	E130120F12Rik	zinc finger protein 953	protein-coding	2.82318633869688	2.17044454062659	3.5352456918821	3.23180046456571	2.93491810274237	1.64932182895564	3.56184041650497	3.39103538917884	0.0535203671534681	0.943892721949851	0.998431161219273
Merged-chr18-44757895-4	chr18	44757803	44758003	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085373, intron 2 of 18)	MTD|LTR|ERVL-MaLR	54279.0	NM_001085373	328949.0	Mm.312511	NM_001033406	ENSMUSG00000071856	Mcc	D18Ertd451e|E330037C19	mutated in colorectal cancers	protein-coding	5.00684557411734	5.2004187868328	5.30547231082088	4.84949450065059	4.22420004209891	4.20362766591581	5.36940605118513	4.26539953968996	-0.586706023689282	0.120991457358503	0.545735152401246
Merged-chr2-129636206-2	chr2	129636106	129636306	+	587.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	40744.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80324757-2	chr10	80324657	80324857	+	548.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008793, intron 8 of 14)	intron (NM_008793, intron 8 of 14)	-4209.0	NM_025521	66374.0	Mm.383824	NM_025521	ENSMUSG00000020133	2310011J03Rik	AI452186|AW545358	RIKEN cDNA 2310011J03 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-70225974-1	chr10	70225874	70226074	+	653.0	f0_balb.idr	Intergenic	Intergenic	-19302.0	NM_025807	66859.0	Mm.19325	NM_025807	ENSMUSG00000037762	Slc16a9	1200003C15Rik|4930425B13Rik|AI552636	solute carrier family 16 (monocarboxylic acid transporters), member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-39946220-2	chr9	39946120	39946320	+	596.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	3958.0	NM_147107	259111.0	Mm.223481	NM_147107	ENSMUSG00000051493	Olfr974	MOR171-1	olfactory receptor 974	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-78372307-2	chr10	78372207	78372407	+	768.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11B|LTR|ERVK	-20607.0	NM_053014	28169.0	Mm.141230	NM_053014	ENSMUSG00000001211	Agpat3	AW061257|AW493985|D10Jhu12e|lpaat3	1-acylglycerol-3-phosphate O-acyltransferase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-68866771-2	chr11	68866671	68866871	+	735.799988	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-13640.0	NM_023668	83431.0	Mm.31979	NM_023668	ENSMUSG00000018736	Ndel1	2600006O07Rik|MITAP1|NUDEL|mNudel	nudE neurodevelopment protein 1 like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-10321682-3	chr17	10321607	10321807	+	690.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_037588)	TTS (NR_037588)	1788.0	NR_037588	100526796.0	Mm.384135	NR_037588		Cahm	B930003M22Rik	colon adenocarcinoma hypermethylated RNA	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-121603009-4	chr3	121602912	121603112	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A1|LTR|ERVL-MaLR	40473.0	NR_036456	100503044.0	Mm.65320	NM_176992	ENSMUSG00000044522	A730020M07Rik	-	RIKEN cDNA A730020M07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-29171259-4	chr17	29171144	29171344	+	934.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360239, intron 13 of 21)	intron (NM_001360239, intron 13 of 21)	36188.0	NM_001002786	442827.0	Mm.440341	NM_001002786	ENSMUSG00000064147	Rab44	9830134C10Rik	RAB44, member RAS oncogene family	protein-coding	3.11280164023777	3.66983232528084	3.18260372151154	2.98106164277391	3.1393968765868	3.77458540605617	4.23638101501221	3.61594183570816	0.751232215130263	0.176003195761826	0.645775639984829
Merged-chr7-27475713-2	chr7	27475558	27475758	+	725.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_133210, intron 1 of 1)	B3|SINE|B2	1818.0	NM_133210	170742.0	Mm.200120	NM_133210	ENSMUSG00000055200	Sertad3	AW124805|D1Mgi51|Rbt1|Sei3	SERTA domain containing 3	protein-coding	-1.8418762459921	-1.8125357239735	-1.82140854000656	-1.82869693527674	-1.56059678980999	-1.8106129477253	-1.81939992894326	-1.82739231600805	1.3620893379502	0.699511506488145	1
Merged-chr9-110333302-4	chr9	110333203	110333403	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001103162)	promoter-TSS (NM_001103162)	15.0	NM_001103162	235623.0	Mm.288741	NM_001001144	ENSMUSG00000032485	Scap	9530044G19|mKIAA0199	SREBF chaperone	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6045006-2	chr19	6044906	6045106	+	611.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-1570.0	NM_028769	74126.0	Mm.149870	NM_028769	ENSMUSG00000024807	Syvn1	1200010C09Rik|AW211966|C85322|D530017H19Rik|Hrd1	synovial apoptosis inhibitor 1, synoviolin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-63123831-4	chr14	63123713	63123913	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007798, intron 1 of 9)	intron (NM_007798, intron 1 of 9)	1351.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83632982-4	chr6	83632854	83633054	+	949.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	23162.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167948075-3	chr2	167947947	167948147	+	852.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011201, intron 1 of 8)	intron (NM_011201, intron 1 of 8)	15720.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-65842214-2	chr17	65842114	65842314	+	615.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_104465)	TTS (NR_104465)	42709.0	NM_001198949	19765.0	Mm.17009	NM_009067	ENSMUSG00000024096	Ralbp1	RLIP76|Rip1	ralA binding protein 1	protein-coding	-1.10384998116487	-1.07946603826229	-1.09181520747217	-1.09984628216847	-1.10325314425446	-1.07678992177872	-1.08901962624914	-0.315793331868817	3.00679100283758	0.36959816332642	1
Merged-chr9-84569741-3	chr9	84569640	84569840	+	906.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-204658.0	NR_040739	75253.0	Mm.401984	NR_040739	ENSMUSG00000099724	4930554C24Rik	-	RIKEN cDNA 4930554C24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124532143-3	chr5	124532036	124532236	+	884.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021430)	promoter-TSS (NM_021430)	-745.0	NM_021430	75695.0	Mm.41180	NM_021430	ENSMUSG00000029392	Rilpl1	2900002H16Rik|6330559I19Rik|GOSPEL	Rab interacting lysosomal protein-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-77065792-4	chr18	77065702	77065902	+	980.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001164168, exon 1 of 14)	5' UTR (NM_001164168, exon 1 of 14)	122.0	NM_001164170	17344.0	Mm.6370	NM_008602	ENSMUSG00000025423	Pias2	6330408K17Rik|AI462206|ARIP3|AU018068|Dib|Miz1|PIASxalpha|PIASxb|PIASxbeta|SIZ2	protein inhibitor of activated STAT 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3931922-4	chr19	3931802	3932002	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2186.0	NM_026316	67689.0	Mm.109341	NM_026316	ENSMUSG00000024885	Aldh3b1	1700001N19Rik|ALDH4|ALDH7	aldehyde dehydrogenase 3 family, member B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-100664239-6	chr5	100664145	100664345	+	844.4722289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027978, intron 2 of 6)	intron (NM_027978, intron 2 of 6)	10011.0	NM_027978	71883.0	Mm.260661	NM_027978	ENSMUSG00000029319	Coq2	2310002F18Rik|PHB:PPT	coenzyme Q2 4-hydroxybenzoate polyprenyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-45907561-1	chr1	45907461	45907661	+	1000.0	f0_balb.idr	TTS (NM_016917)	TTS (NM_016917)	18033.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-151657284-1	chr1	151657184	151657384	+	751.0	f0_balb.idr	intron (NM_022018, intron 5 of 13)	intron (NM_022018, intron 5 of 13)	85911.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-87394049-4	chr6	87393959	87394159	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-5124.0	NM_026860	68888.0	Mm.46387	NM_026860	ENSMUSG00000030048	Gkn3	1190003M12Rik	gastrokine 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-145111449-2	chr5	145111349	145111549	+	705.125	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-2807.0	NM_023142	11867.0	Mm.30010	NM_023142	ENSMUSG00000029622	Arpc1b	41kDa|AA408064|AA408534|AA571392|AF007010|AW208418|L72|SOP2Hs|p41-ARC	actin related protein 2/3 complex, subunit 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180410451-2	chr1	180410351	180410551	+	632.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081175, intron 2 of 7)	intron (NM_001081175, intron 2 of 7)	73053.0	NM_001081227	381310.0	Mm.44791	NM_001081227	ENSMUSG00000053963	Stum	6330403A02Rik|Gm10001|R75555	mechanosensory transduction mediator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-57183630-1	chr16	57183530	57183730	+	806.0	f1_c57bl6.idr	intron (NM_026254, intron 13 of 17)	intron (NM_026254, intron 13 of 17)	-16298.0	NM_023175	52633.0	Mm.383203	NM_023175	ENSMUSG00000022751	Nit2	1190017B19Rik|D16Ertd502e	nitrilase family, member 2	protein-coding	-1.107570214359	-1.08653447535648	-1.09741130683982	-0.688779236681923	-0.841983873845991	-1.08417742060026	-1.09494903060535	-1.10420625070982	-0.619773806471497	0.851573714113283	1
Merged-chr14-70059441-2	chr14	70059349	70059549	+	819.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_028560, intron 6 of 6)	intron (NM_028560, intron 6 of 6)	-17996.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71285487-2	chr8	71285387	71285587	+	795.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001142322, intron 1 of 39)	intron (NM_001142322, intron 1 of 39)	12773.0	NM_001142323	17925.0	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-27709998-2	chr15	27709898	27710098	+	632.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28456.0	NM_001242423	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-41943253-1	chr3	41943153	41943353	+	1000.0	f0_balb.idr	Intergenic	L2a|LINE|L2	200635.0	NM_027271	73852.0	Mm.29006	NM_027271	ENSMUSG00000025766	D3Ertd751e	2810009O15Rik|4930415G15Rik	DNA segment, Chr 3, ERATO Doi 751, expressed	protein-coding	-1.50865488148137	-1.47610178681596	-1.48594611133376	-1.49403253259917	-1.35258228898051	-1.16417614753549	-1.48371757204438	-1.49258506705888	2.15710271411426	0.528357820340818	1
Merged-chr6-71438228-4	chr6	71438105	71438305	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355745, intron 1 of 9)	intron (NM_001355745, intron 1 of 9)	2432.0	NM_001355745	68477.0	Mm.28474	NM_024288	ENSMUSG00000002222	Rmnd5a	1110007A06Rik|AJ237586|AW125795|Gid2|MTA.D02.090	required for meiotic nuclear division 5 homolog A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127761206-3	chr7	127761123	127761323	+	891.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172748, intron 7 of 10)	intron (NM_172748, intron 7 of 10)	-8592.0	NM_198424	269999.0	Mm.36852	NM_198424	ENSMUSG00000043964	Orai3	9930124N15|BC061259|Tmem142c	ORAI calcium release-activated calcium modulator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-47937078-4	chr19	47936959	47937159	+	998.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163267)	promoter-TSS (NM_001163267)	-653.0	NM_001163267	381229.0	Mm.300553	NM_001163267	ENSMUSG00000046585	Cfap58	Ccdc147|Gm969	cilia and flagella associated protein 58	protein-coding	1.56252039610643	0.971276278464592	0.948532275575465	1.99193063977986	1.7986954372739	2.50896299252849	0.953620381801799	1.6663538125962	1.13901699669352	0.370292151075318	0.863727598865104
Merged-chr7-28358486-2	chr7	28358386	28358586	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6946.0	NR_028129	100302567.0		NR_028129		AF357399	MBI-142	snoRNA AF357399	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-27673273-2	chr7	27673173	27673373	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290528, intron 1 of 9)	intron (NM_001290528, intron 1 of 9)	1308.0	NM_001290528	269881.0	Mm.389883	NM_001081292	ENSMUSG00000040390	Map3k10	BC028668|BC046514|MST|Mlk2	mitogen-activated protein kinase kinase kinase 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-46772738-4	chr17	46772604	46772804	+	964.383301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025966)	promoter-TSS (NM_025966)	69.0	NM_025966	67101.0	Mm.358702	NM_025966	ENSMUSG00000062619	2310039H08Rik	-	RIKEN cDNA 2310039H08 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-59291522-4	chr9	59291422	59291622	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028121)	promoter-TSS (NM_028121)	-50.0	NM_001359282	72141.0	Mm.22456	NM_028121	ENSMUSG00000025236	Adpgk	2610017G09Rik|Adp-gk|C77577	ADP-dependent glucokinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80918076-5	chr10	80917848	80918048	+	806.985718	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010722, intron 1 of 11)	CpG	297.0	NM_010722	16907.0	Mm.7362	NM_010722	ENSMUSG00000062075	Lmnb2	-	lamin B2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102380326-4	chr12	102380233	102380433	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177620, intron 7 of 9)	intron (NM_177620, intron 7 of 9)	59480.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-81653170-2	chr17	81653070	81653270	+	758.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 1 of 8)	intron (NR_104580, intron 1 of 8)	85217.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-55307756-1	chr9	55307656	55307856	+	703.333313	f0_balb.idr	Intergenic	B3|SINE|B2	-19157.0	NM_172923	244886.0	Mm.24361	NM_172923	ENSMUSG00000032313	Tmem266	9630029F15|AI118078|HVRP1	transmembrane protein 266	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-74772087-2	chr1	74771987	74772187	+	606.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_009526, exon 1 of 4)	5' UTR (NM_009526, exon 1 of 4)	195.0	NM_009526	22420.0	Mm.268282	NM_009526	ENSMUSG00000033227	Wnt6	AA409270|Wnt-6	wingless-type MMTV integration site family, member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128058947-4	chr10	128058872	128059072	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019766)	promoter-TSS (NM_019766)	-10.0	NM_019766	56351.0	Mm.305816	NM_019766	ENSMUSG00000071072	Ptges3	5730442A20Rik|Ptges|Tebp|cPGES|p23|sid3177	prostaglandin E synthase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-147992746-4	chr5	147992656	147992856	+	992.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029920, intron 1 of 14)	ORR1D2|LTR|ERVL-MaLR	35436.0	NM_029920	77521.0	Mm.244177	NM_029920	ENSMUSG00000029651	Mtus2	5730592G18Rik|A730013O20Rik|AU067634|C130038G02Rik|Cazip|Gm763|mKIAA0774	microtubule associated tumor suppressor candidate 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-130820743-2	chr4	130820643	130820843	+	571.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011520, intron 3 of 4)	intron (NM_011520, intron 3 of 4)	28206.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-145034207-3	chr7	145034098	145034298	+	868.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR9D|LTR|ERVK	-94273.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	-1.10384998116487	-1.07946603826229	-1.09181520747217	-1.09984628216847	-1.10325314425446	-1.07678992177872	-1.08901962624914	-0.315793331868817	3.00679100283758	0.36959816332642	1
Merged-chr11-95421263-2	chr11	95421163	95421363	+	853.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359107, intron 1 of 9)	intron (NM_001359107, intron 1 of 9)	7180.0	NM_001359107	20747.0	Mm.285454	NM_025287	ENSMUSG00000057522	Spop	AI315626|Pcif1|TEF2	speckle-type POZ protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-90132984-2	chr18	90132884	90133084	+	587.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-363848.0	NM_001039173	623279.0	Mm.447164	NM_001039173	ENSMUSG00000073514	Dok6	Dok-6	docking protein 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-82048254-4	chr11	82048143	82048343	+	869.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_013654)	TTS (NM_013654)	2531.0	NM_013654	20306.0	Mm.341574	NM_013654	ENSMUSG00000035373	Ccl7	MCP-3|Scya7|fic|marc|mcp3	chemokine (C-C motif) ligand 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-88996504-2	chr11	88996404	88996604	+	714.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2899.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	-0.98636673676577	-0.970012647363645	-0.981062430681435	-0.686267214584395	-0.517023662368924	-0.967502533196007	-0.978973616254493	-0.982712688893276	0.730251360213607	0.819753442490402	1
Merged-chr18-37994184-2	chr18	37994084	37994284	+	584.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_139206, intron 4 of 32)	B4A|SINE|B4	-3239.0	NR_105946	102466913.0		NR_105946	ENSMUSG00000098297	Mir6980	Gm27969|mmu-mir-6980	microRNA 6980	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120094334-2	chr11	120094234	120094434	+	919.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_183137, intron 7 of 12)	intron (NM_183137, intron 7 of 12)	4397.0	NM_183137	78777.0	Mm.23672	NM_183137	ENSMUSG00000025377	Tepsin	2410002I01Rik|Enthd2	TEPSIN, adaptor related protein complex 4 accessory protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-31029924-4	chr16	31029822	31030022	+	989.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198626, intron 2 of 3)	intron (NM_198626, intron 2 of 3)	51510.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	5.39654926088291	5.86291942557001	5.88433282150106	5.56653873719159	5.99567271528752	5.62471439340039	5.12458577841479	5.5146128119489	-0.0898122220176014	0.747496202436255	0.998431161219273
Merged-chr10-26751054-3	chr10	26750963	26751163	+	926.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21449.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	0.418186483018503	0.442167620263867	1.01644560931722	1.07353196365517	0.7006898630806	0.443929136728423	1.02801432537309	0.60080039939987	-0.365968567332872	0.83071497327592	1
Merged-chr11-115105347-4	chr11	115105244	115105444	+	839.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163753, intron 1 of 8)	intron (NM_001163753, intron 1 of 8)	13913.0	NM_001163753	58222.0	Mm.143789	NM_021411	ENSMUSG00000020732	Rab37	B230331O03Rik|B230354I04Rik	RAB37, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-63174619-3	chr10	63174506	63174706	+	735.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_182992, intron 2 of 19)	intron (NM_182992, intron 2 of 19)	29346.0	NM_182992	68802.0	Mm.259767	NM_182992	ENSMUSG00000020067	Mypn	1110056A04Rik|9830112J03|AI853556|mKIAA4170	myopalladin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-115985646-4	chr3	115985533	115985733	+	999.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023214, intron 5 of 10)	intron (NM_023214, intron 5 of 10)	5731.0	NR_130332	100316705.0		NR_130332	ENSMUSG00000089261	Mir669n	mmu-mir-669n	microRNA 669n	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-18262353-2	chr14	18262253	18262453	+	573.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	8628.0	NM_001359897	66480.0	Mm.2050	NM_025586	ENSMUSG00000012405	Rpl15	2510008H07Rik	ribosomal protein L15	protein-coding	-1.8429182434137	-1.8129848525291	-1.82203695700074	-1.54461076807193	-1.84081697472045	-1.81102322372834	-1.81998775896484	-1.82814164409203	-1.43114970378833	0.684630132144154	1
Merged-chr1-184031454-2	chr1	184031354	184031554	+	744.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	2544.0	NM_028516	73363.0	Mm.50115	NM_028516	ENSMUSG00000044854	1700056E22Rik	-	RIKEN cDNA 1700056E22 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-108044913-4	chr3	108044799	108044999	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026764)	promoter-TSS (NM_026764)	-40.0	NM_001160411	14865.0	Mm.31203	NM_026764	ENSMUSG00000027890	Gstm4	1110004G14Rik|GSTM7-7|Gstb-4|Gstb4	glutathione S-transferase, mu 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-98151422-2	chr3	98151322	98151522	+	686.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9212.0	NM_027665	71078.0	Mm.50711	NM_027665	ENSMUSG00000043468	Adam30	4933424D07Rik|svph4	a disintegrin and metallopeptidase domain 30	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-80798542-2	chr17	80798442	80798642	+	866.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70517.0	NM_001290345	225028.0	Mm.311948	NM_001081357	ENSMUSG00000024242	Map4k3	4833416M01Rik|4833416M07Rik|9530052P13Rik|Glk|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1	mitogen-activated protein kinase kinase kinase kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-109054880-4	chr9	109054772	109054972	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026381)	promoter-TSS (NM_026381)	6.0	NM_026381	66940.0	Mm.196533	NM_025858	ENSMUSG00000025647	Shisa5	2310008D10Rik|6430628I05Rik|Scotin|mShisa5	shisa family member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-83540414-6	chr9	83540312	83540512	+	869.638916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7926.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	2.19014466121824	2.09950639602942	1.87990657119309	1.82803617357	1.20945863153818	2.25238342724187	2.87525292546254	1.98075076305514	0.539416313955866	0.585285285653743	0.967268722441911
Merged-chr11-86586452-4	chr11	86586349	86586549	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356531, intron 11 of 11)	intron (NM_001356531, intron 11 of 11)	-2291.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-82927330-4	chr1	82927239	82927439	+	843.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16|LTR|ERVK	87879.0	NM_001347077	15463.0	Mm.392569	NM_010472	ENSMUSG00000026159	Agfg1	AU045498|C130049H11Rik|C85612|D730048C23Rik|Hrb|RAB|Rip	ArfGAP with FG repeats 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-27381595-4	chr14	27381483	27381683	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027871, intron 4 of 10)	URR1A|DNA|hAT-Charlie	20194.0	NM_001289688	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	5.41949605030281	5.26258013643264	5.27917954347657	5.24330313149081	5.80671330327764	5.21975971316272	5.73457154077193	5.38313426413167	0.296461256485982	0.286611032703143	0.791309403099347
Merged-chr17-47010548-4	chr17	47010465	47010665	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177374)	promoter-TSS (NM_001177374)	-33.0	NM_001177374	224826.0	Mm.28234	NM_146078	ENSMUSG00000023977	Ubr2	9930021A08Rik|AI462103|AW540746|E130209G04Rik|mKIAA0349	ubiquitin protein ligase E3 component n-recognin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-126876269-4	chr2	126876153	126876353	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021450)	promoter-TSS (NM_021450)	8.0	NM_001164325	58800.0	Mm.244705	NM_021450	ENSMUSG00000027365	Trpm7	2310022G15Rik|4833414K03Rik|5033407O22Rik|CHAK|CHAK1|LTrpC-7|Ltpr7|Ltrpc7|TRPPLIK	transient receptor potential cation channel, subfamily M, member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-67097127-1	chr14	67097027	67097227	+	770.5	f0_balb.idr	Intergenic	Intergenic	-24656.0	NM_001205188	71978.0	Mm.273997	NM_028032	ENSMUSG00000022052	Ppp2r2a	2410004D02Rik|mKIAA1541	protein phosphatase 2, regulatory subunit B, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-79202702-3	chr11	79202616	79202816	+	793.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40308.0	NM_001042565	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	0.290090207835128	0.319361315431046	0.515974378193485	0.302527148948618	0.61115721397429	0.321474825955095	1.27906196831397	1.21632599648498	3.74375678633062	0.0428709602541112	1
Merged-chr2-152106437-2	chr2	152106337	152106537	+	719.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029688, intron 1 of 1)	intron (NM_029688, intron 1 of 1)	913.0	NM_029688	76650.0	Mm.218639	NM_029688	ENSMUSG00000032802	Srxn1	1700127B04Rik|AI854065|AW488194|Npn3|Srx|Srx1|TX01	sulfiredoxin 1 homolog (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-92698862-4	chr7	92698764	92698964	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28952.0	NM_029078	74737.0	Mm.288645	NM_029078	ENSMUSG00000041328	Pcf11	2500001H09Rik|5730417B17Rik|C77803	PCF11 cleavage and polyadenylation factor subunit	protein-coding	3.67666642149483	3.89705826820686	4.37218707137842	3.93528800842729	4.30341995075093	4.58772784887655	2.79243268153147	3.68002092534339	0.0147005122331822	0.977379335458527	0.998431161219273
Merged-chr4-130936022-2	chr4	130935922	130936122	+	761.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010686, exon 8 of 8)	3' UTR (NM_010686, exon 8 of 8)	-8363.0	NM_010769	17180.0	Mm.271796	NM_010769	ENSMUSG00000040533	Matn1	CMP|Crtm|Mat1|matrilin-1	matrilin 1, cartilage matrix protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-66839593-4	chr7	66839495	66839695	+	977.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033877)	promoter-TSS (NM_001033877)	-140.0	NM_001033877	233332.0	Mm.445763	NM_001033877	ENSMUSG00000058145	Adamts17	AU023434	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116009006-2	chr11	116008906	116009106	+	728.666626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_133663)	TTS (NM_133663)	3713.0	NM_016905	14635.0	Mm.2820	NM_016905	ENSMUSG00000020766	Galk1	AA409894|GALK|Gk|Glk|Glk1	galactokinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80425478-2	chr10	80425378	80425578	+	590.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164153, intron 3 of 18)	intron (NM_001164153, intron 3 of 18)	8175.0	NM_001164150	21423.0	Mm.3406	NM_011548	ENSMUSG00000020167	Tcf3	A1|AA408400|ALF2|AW209082|E12|E12/E47|E2A|E47|KA1|ME2|Pan1|Pan2|TCF-3|Tcfe2a|VDIR|bHLHb21	transcription factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-44467184-1	chr11	44467084	44467284	+	577.0	f1_balb.idr	intron (NM_024475, intron 1 of 10)	intron (NM_024475, intron 1 of 10)	3364.0	NM_024475	79560.0	Mm.338784	NM_024475	ENSMUSG00000041231	Ublcp1	4930527B16Rik|8430435I17Rik|BC002236	ubiquitin-like domain containing CTD phosphatase 1	protein-coding	1.85345127957943	2.0778680755846	1.25478698989969	2.28630418581591	1.73704199379558	2.55513595471573	2.46806569228625	1.82085739071178	0.687221943996438	0.483590343011711	0.931207887927275
Merged-chr7-63858687-4	chr7	63858578	63858778	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58179.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-52017929-4	chr3	52017836	52018036	+	946.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	87070.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-37421461-3	chr9	37421371	37421571	+	739.31665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001164767, exon 16 of 28)	exon (NM_001164767, exon 16 of 28)	11704.0	NM_001164767	19649.0	Mm.212826	NM_011248	ENSMUSG00000032128	Robo3	Rbig1|Rig-1|Rig1|Robo3a|Robo3b	roundabout guidance receptor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-54019421-3	chr6	54019388	54019588	+	611.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20444.0	NM_001163640	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	-0.811871916059096	-1.15223696528766	-1.16265319256742	-1.17120939178942	-0.911301499403313	-1.14997972538381	-1.16029518702849	-1.16967783621951	-0.385190450359539	0.909269396991215	1
Merged-chr16-21686319-2	chr16	21686219	21686419	+	620.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001881, intron 1 of 1)	L1_Mur3|LINE|L1	8346.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-98946283-4	chr10	98946194	98946394	+	976.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359507, intron 1 of 21)	intron (NM_001359507, intron 1 of 21)	31142.0	NM_026482	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120510188-4	chr8	120510059	120510259	+	924.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198671, intron 1 of 15)	intron (NM_198671, intron 1 of 15)	21293.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-135811468-3	chr1	135811353	135811553	+	860.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001112702)	TTS (NM_001112702)	-7145.0	NM_133664	16763.0	Mm.36726	NM_133664	ENSMUSG00000041782	Lad1	LADA|lad-1	ladinin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27701964-2	chr2	27701864	27702064	+	694.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011305, intron 1 of 9)	intron (NM_011305, intron 1 of 9)	-7328.0	NM_001290481	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117874809-2	chr10	117874709	117874909	+	735.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28835.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35005097-2	chr17	35004997	35005197	+	644.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011690, intron 6 of 29)	intron (NM_011690, intron 6 of 29)	4190.0	NM_011690	22321.0	Mm.28420	NM_011690	ENSMUSG00000007029	Vars	Bat6|D17H6S56E|G7a|Vars2	valyl-tRNA synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-128723207-4	chr1	128723130	128723330	+	787.604187	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-130931.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	3.27391800952534	3.3610767798999	2.14635724499608	2.90210522777262	2.86844203364374	3.00111307627761	2.90260249214051	3.17968095161211	-0.0253625892725654	0.969621236530263	0.998431161219273
Merged-chr1-106170948-1	chr1	106170848	106171048	+	659.0	f1_balb.idr	promoter-TSS (NM_133821)	promoter-TSS (NM_133821)	576.0	NR_040630	626049.0	Mm.247410	NR_040630	ENSMUSG00000101583	Gm20753	-	predicted gene, 20753	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-142457861-2	chr5	142457761	142457961	+	583.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_199068, exon 9 of 9)	3' UTR (NM_199068, exon 9 of 9)	-6070.0	NM_172725	231855.0	Mm.78250	NM_172725	ENSMUSG00000039623	Ap5z1	C330006K01Rik	adaptor-related protein complex 5, zeta 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-67172869-4	chr15	67172772	67172972	+	916.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009177, intron 1 of 8)	intron (NM_009177, intron 1 of 8)	4010.0	NM_009177	20442.0	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-181145164-2	chr1	181145064	181145264	+	629.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026171)	promoter-TSS (NM_026171)	-960.0	NM_026171	67459.0	Mm.263464	NM_026171	ENSMUSG00000026516	Nvl	1200009I24Rik	nuclear VCP-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-49243910-4	chr11	49243788	49243988	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010794)	promoter-TSS (NM_010794)	-303.0	NM_010794	17308.0	Mm.196933	NM_010794	ENSMUSG00000020346	Mgat1	Mgat-1	mannoside acetylglucosaminyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-84551296-3	chr7	84551178	84551378	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045098, intron 1 of 2)	intron (NR_045098, intron 1 of 2)	22324.0	NR_045098	100039239.0	Mm.44882	NR_045098		Gm2115	C77713	predicted gene 2115	ncRNA	2.22718172171379	2.34893059067746	2.52112798453432	2.64903421166805	2.83706165164263	2.20974553031327	2.54005918911188	2.35170497815734	0.151434237255137	0.844749132703162	0.998431161219273
Merged-chr16-70104158-3	chr16	70104056	70104256	+	914.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-209793.0	NM_028803	74185.0	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36323919-1	chr18	36323819	36324019	+	550.0	f1_balb.idr	Intergenic	Intergenic	23818.0	NM_001267796	109169.0	Mm.426423	NM_001267796	ENSMUSG00000110185	Igip	6330403M23Rik	IgA inducing protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-25618198-2	chr2	25618098	25618298	+	619.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029859)	promoter-TSS (NM_029859)	-520.0	NM_029859	77058.0	Mm.478493	NM_029859	ENSMUSG00000026940	Ccdc183	4921530D09Rik|Cccd183|Kiaa1984	coiled-coil domain containing 183	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-122742240-2	chr10	122742140	122742340	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110218, intron 1 of 9)	intron (NM_001110218, intron 1 of 9)	62925.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-143473675-4	chr7	143473579	143473779	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008767)	promoter-TSS (NM_008767)	-76.0	NM_008767	18400.0	Mm.271740	NM_008767	ENSMUSG00000000154	Slc22a18	AW260131|BWR1A|BWSCR1A|HET|ITM|Impt1|Orctl2|Slc22a1l|TSSC5|p45-BWR1A	solute carrier family 22 (organic cation transporter), member 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56626927-4	chr17	56626809	56627009	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028782)	promoter-TSS (NM_028782)	-6.0	NM_028782	74142.0	Mm.329136	NM_028782	ENSMUSG00000041168	Lonp1	1200017E13Rik|LON|Prss15	lon peptidase 1, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-127829867-4	chr8	127829779	127829979	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	448346.0	NR_105822	102465212.0		NR_105822	ENSMUSG00000099326	Mir21c	Gm28013|mmu-mir-21c	microRNA 21c	ncRNA	3.78909694026795	4.83289700435199	3.8211236771869	4.16251319794668	4.3179282484369	3.89993171113054	4.30649923023193	3.73248123780174	-0.164318620555194	0.718764354229682	0.998431161219273
Merged-chr10-21777350-4	chr10	21777245	21777445	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC3|LINE|L1	86500.0	NR_045843	432436.0	Mm.244553	NM_001004162	ENSMUSG00000056716	Gm5420	EG432436	predicted gene 5420	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-11391101-4	chr2	11391011	11391211	+	996.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040615, intron 1 of 2)	intron (NR_040615, intron 1 of 2)	7389.0	NR_040615	77543.0	Mm.490670	NR_040615	ENSMUSG00000102674	8030442B05Rik	-	RIKEN cDNA 8030442B05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25577063-1	chr7	25576963	25577163	+	786.75	f0_balb.idr	Intergenic	Intergenic	-37059.0	NM_001113369	26367.0	Mm.439731	NM_007543	ENSMUSG00000054385	Ceacam2	AI267129|Bgp2|Ceacam2-L	carcinoembryonic antigen-related cell adhesion molecule 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-123095470-8	chr6	123095366	123095566	+	902.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27224.0	NM_001170332	26888.0	Mm.47384	NM_011999	ENSMUSG00000030148	Clec4a2	Clec4a|Clecsf6|DCIR|Dcir1	C-type lectin domain family 4, member a2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-3672136-4	chr8	3672061	3672261	+	955.0714109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357661, intron 1 of 1)	intron (NM_001357661, intron 1 of 1)	230.0	NM_001357661	100503924.0	Mm.415621	NM_001357661	ENSMUSG00000089665	Fcor	2400009B08Rik	Foxo1 corepressor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-116720343-2	chr4	116720243	116720443	+	615.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146151)	promoter-TSS (NM_146151)	-612.0	NM_146151	230661.0	Mm.482431	NM_146151	ENSMUSG00000033985	Tesk2	-	testis-specific kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126884362-4	chr8	126884263	126884463	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35343.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-108252123-4	chr11	108252007	108252207	+	932.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011101, intron 2 of 16)	intron (NM_011101, intron 2 of 16)	91781.0	NM_011101	18750.0	Mm.222178	NM_011101	ENSMUSG00000050965	Prkca	AI875142|Pkca	protein kinase C, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-31035749-2	chr7	31035649	31035849	+	675.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001287217, intron 6 of 8)	L2a|LINE|L2	4568.0	NR_106017	102465635.0		NR_106017	ENSMUSG00000098783	Mir7050	Gm27578|mmu-mir-7050	microRNA 7050	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-119058586-7	chr5	119058466	119058666	+	987.127014	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49670.0	NR_040693	73477.0	Mm.410863	NR_040693	ENSMUSG00000100573	1700081H04Rik	-	RIKEN cDNA 1700081H04 gene	ncRNA	1.91316382212693	1.91340617844121	2.08431474143452	1.09368031949475	1.7130401524191	1.13958949812151	2.53159243947905	1.66406982849105	0.1983016158356	0.861036808730942	0.998431161219273
Merged-chr16-10399310-3	chr16	10399184	10399384	+	890.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3819.0	NM_001291001	70426.0	Mm.142181	NM_001099275	ENSMUSG00000039179	Tekt5	3300001K11Rik	tektin 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19501874-4	chr7	19501766	19501966	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6465.0	NM_177692	232946.0	Mm.64557	NM_177692	ENSMUSG00000057667	Bloc1s3	BC043666|Blos3|E230011O18|rp	biogenesis of lysosomal organelles complex-1, subunit 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-58507161-3	chr16	58506982	58507182	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357433, intron 2 of 10)	B3|SINE|B2	16344.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-134074019-20	chr1	134073794	134073994	+	856.0324710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_007570)	TTS (NM_007570)	5261.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-45388616-3	chr19	45388522	45388722	+	881.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009771, intron 1 of 13)	intron (NM_009771, intron 1 of 13)	24888.0	NM_001360126	12234.0	Mm.119717	NM_009771	ENSMUSG00000025217	Btrc	Beta-Trcp1|E3RS-IkappaB|E3RSIkappaB|FWD1|Fbw1a|HOS|SCF b-TRCP|Slimb|b-TrCP|beta-TrCP	beta-transducin repeat containing protein	protein-coding	1.02621815103195	1.02850442411299	1.45281223784505	0.628483005855495	1.32490900865326	0.649005883867941	1.13882556121011	0.629879201471921	-0.412040347125177	0.791457508366783	0.998431161219273
Merged-chr11-87122090-4	chr11	87121985	87122185	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_025377, exon 4 of 4)	3' UTR (NM_025377, exon 4 of 4)	-4990.0	NM_197987	68729.0	Mm.17436	NM_197987	ENSMUSG00000018548	Trim37	1110032A10Rik|2810004E07Rik|AI848587|AU043018|MUL|TEF3|mKIAA0898	tripartite motif-containing 37	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-23346979-4	chr16	23346870	23347070	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252505, intron 5 of 7)	MTEa|LTR|ERVL-MaLR	56500.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-63130719-4	chr11	63130595	63130795	+	855.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008885)	promoter-TSS (NM_008885)	-762.0	NM_008885	18858.0	Mm.1237	NM_008885	ENSMUSG00000018217	Pmp22	22kDa|Gas-3|HNPP|TRE002|Tr|trembler	peripheral myelin protein 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-97105587-4	chr9	97105489	97105689	+	999.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138756, intron 1 of 6)	intron (NM_138756, intron 1 of 6)	5452.0	NM_138756	192287.0	Mm.228067	NM_138756	ENSMUSG00000032449	Slc25a36	C330005L02Rik	solute carrier family 25, member 36	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-28858194-3	chr13	28858092	28858292	+	971.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045054, intron 2 of 7)	intron (NR_045054, intron 2 of 7)	27230.0	NR_045054	72518.0	Mm.37454	NR_045053		2610307P16Rik	AI666457	RIKEN cDNA 2610307P16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-68275548-4	chr10	68275472	68275672	+	998.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023598, intron 2 of 9)	intron (NM_023598, intron 2 of 9)	3154.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-8579519-4	chr11	8579422	8579622	+	992.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 3 of 30)	intron (NM_001083587, intron 3 of 30)	85013.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	2.92851596551574	1.28745235173947	2.43688931476851	2.00693502963869	2.43632195931767	1.80473166338525	2.73572854368102	1.23040514534725	-0.271701310659829	0.793882712534202	0.998431161219273
Merged-chr3-126667459-3	chr3	126667369	126667569	+	622.0	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	intron (NM_001025438, intron 2 of 18)	intron (NM_001025438, intron 2 of 18)	70518.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	3.50001941538503	2.93997896572261	2.29397583404981	3.2717691032355	2.83094096482408	2.19531434863076	2.86365288954289	3.06003661907958	-0.551991686459891	0.429127831730446	0.903416445927044
Merged-chr10-20395992-1	chr10	20395892	20396092	+	581.0	f0_balb.idr	Intergenic	Intergenic	48173.0	NM_027930	71804.0	Mm.262151	NM_027930	ENSMUSG00000019992	Mtfr2	2610016C23Rik|4933412C16Rik|Dufd1|Fam54a	mitochondrial fission regulator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-61337908-1	chr9	61337808	61338008	+	541.0	f1_c57bl6.idr	Intergenic	Intergenic	-34458.0	NM_001083928	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-6601513-4	chr15	6601393	6601593	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011815, intron 1 of 17)	intron (NM_011815, intron 1 of 17)	21646.0	NM_011815	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-96333457-4	chr10	96333381	96333581	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	107274.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-103722746-4	chr5	103722646	103722846	+	699.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-31416.0	NM_133919	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-74807509-3	chr17	74807434	74807634	+	951.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152817, intron 13 of 19)	intron (NM_152817, intron 13 of 19)	89784.0	NM_152817	74196.0	Mm.209503	NM_152817	ENSMUSG00000024078	Ttc27	2610511O17Rik	tetratricopeptide repeat domain 27	protein-coding	-1.18832717429738	-1.16380929885254	-0.856565824811958	-1.18328408639367	-1.18787580914644	-1.16149229066421	-0.849604865165746	-1.18171197755832	0.0406512889656815	0.990321405100139	1
Merged-chr15-102243122-2	chr15	102243022	102243222	+	645.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011244, intron 3 of 9)	intron (NM_011244, intron 3 of 9)	3378.0	NM_001042727	19411.0	Mm.1273	NM_011244	ENSMUSG00000001288	Rarg	Nr1b3|RAR-gamma|RARD|RARgamma2	retinoic acid receptor, gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-30325245-4	chr14	30325172	30325372	+	854.8583369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083616, intron 3 of 46)	MLT1K|LTR|ERVL-MaLR	28214.0	NM_001302637	12289.0	Mm.9772	NM_028981	ENSMUSG00000015968	Cacna1d	8430418G19Rik|C79217|Cach3|Cacn4|Cacnl1a2|Cav1.3|Cchl1a|Cchl1a2|D-LTCC	calcium channel, voltage-dependent, L type, alpha 1D subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-61092095-2	chr18	61091995	61092195	+	799.900024	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13477.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-112614860-2	chr12	112614760	112614960	+	599.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_198411, intron 22 of 22)	intron (NM_198411, intron 22 of 22)	-5187.0	NM_007421	11565.0	Mm.3440	NM_007421	ENSMUSG00000011148	Adssl1	AI528595|Adss|Adss1	adenylosuccinate synthetase like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-64235694-2	chr3	64235594	64235794	+	789.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	51723.0	NM_001104614	637004.0	Mm.469887	NM_001104614	ENSMUSG00000091572	Vmn2r3	EG637004	vomeronasal 2, receptor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-38864289-2	chr2	38864189	38864389	+	635.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010264, intron 3 of 10)	intron (NM_010264, intron 3 of 10)	10459.0	NR_029904	723903.0		NR_029904	ENSMUSG00000065578	Mir181b-2	Mirn181b-2|mir-181b-2	microRNA 181b-2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-63438815-2	chr14	63438715	63438915	+	900.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177628, intron 1 of 3)	intron (NM_177628, intron 1 of 3)	2421.0	NM_177628	219148.0	Mm.37882	NM_177628	ENSMUSG00000035095	Fam167a	A030013D21	family with sequence similarity 167, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81860990-4	chr15	81860880	81861080	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2654.0	NM_020507	57259.0	Mm.323595	NM_020507	ENSMUSG00000048546	Tob2	2900090N22Rik|4930545K18Rik|AV071822|mKIAA1663	transducer of ERBB2, 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-41129446-4	chr9	41129338	41129538	+	663.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176860, intron 1 of 13)	RSINE1|SINE|B4	28624.0	NM_176860	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	1.24428067373321	1.11630197447082	2.26176622189351	1.48302697681905	1.69759732193661	2.04417165318442	2.36656451503317	1.64853376092161	0.98739214127529	0.368611747011893	0.862916999449085
Merged-chr2-49348612-2	chr2	49348512	49348712	+	547.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	102712.0	NM_001290656	109241.0	Mm.440436	NM_029924	ENSMUSG00000036792	Mbd5	9430004D19Rik|AA536666|AI426407|C030040A15Rik|Gm1630	methyl-CpG binding domain protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98547473-2	chr11	98547373	98547573	+	632.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1442.0	NM_011771	22780.0	Mm.133367	NM_011771	ENSMUSG00000018168	Ikzf3	5830411O07Rik|Aiolos|Zfpn1a3|Znfn1a3	IKAROS family zinc finger 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-94297180-1	chr13	94297080	94297280	+	544.0	f1_balb.idr	Intergenic	Intergenic	-11349.0	NM_001346609	107767.0	Mm.201455	NM_029153	ENSMUSG00000021687	Scamp1	4930505M11Rik|AI415563|AW122395	secretory carrier membrane protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-37658743-4	chr13	37658661	37658861	+	726.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-167277.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-113644697-4	chr5	113644629	113644829	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008153, intron 1 of 2)	intron (NM_008153, intron 1 of 2)	-1126.0	NM_001359060	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-93733778-2	chr11	93733678	93733878	+	916.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	151988.0	NM_001013375	217109.0	Mm.379350	NM_001013375	ENSMUSG00000054079	Utp18	6230425C22Rik|6430513M13|Wdr50	UTP18 small subunit processome component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115858150-2	chr11	115858050	115858250	+	761.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34092.0	NM_001252532	217325.0	Mm.290450	NM_145438	ENSMUSG00000020782	Llgl2	9130006H11Rik|Llglh2	LLGL2 scribble cell polarity complex component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-25237184-2	chr19	25237084	25237284	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001348180, exon 1 of 13)	5' UTR (NM_001348180, exon 1 of 13)	209.0	NM_001348180	107351.0	Mm.260722	NM_181404	ENSMUSG00000032702	Kank1	A930031B09Rik|AU015049|AW121052|Ankrd15|D330024H06Rik|mKIAA0172	KN motif and ankyrin repeat domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-6881586-2	chr6	6881486	6881686	+	677.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_010056, exon 1 of 3)	exon (NM_010056, exon 1 of 3)	482.0	NM_198854	13395.0	Mm.4873	NM_010056	ENSMUSG00000029755	Dlx5	AI385752	distal-less homeobox 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-79055615-2	chr2	79055544	79055744	+	559.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	185966.0	NR_151457	22193.0	Mm.1485	NM_009454	ENSMUSG00000027011	Ube2e3	Ubce4|ubcM2	ubiquitin-conjugating enzyme E2E 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-79970383-2	chr10	79970283	79970483	+	583.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_130455)	promoter-TSS (NM_130455)	-341.0	NM_130455	170483.0	Mm.391566	NM_130455	ENSMUSG00000035745	Grin3b	GluN3B|NR3B	glutamate receptor, ionotropic, NMDA3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-110443219-2	chr5	110443119	110443319	+	751.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001317042, intron 1 of 2)	intron (NM_001317042, intron 1 of 2)	5284.0	NM_001317042	381668.0	Mm.348782	NM_028596	ENSMUSG00000043323	Fbrsl1	2410025L10Rik|AI467568|Gm1049|Gm29766|mKIAA1545	fibrosin-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-41888567-1	chr18	41888467	41888667	+	607.0	f0_balb.idr	intron (NM_029942, intron 5 of 6)	intron (NM_029942, intron 5 of 6)	62627.0	NM_029942	77619.0	Mm.30649	NM_029942	ENSMUSG00000056671	Prelid2	1700003A01Rik|C330008K14Rik	PRELI domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-119782905-4	chr8	119782798	119782998	+	865.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4482.0	NM_028883	74347.0	Mm.358759	NM_028883	ENSMUSG00000034105	Tldc1	4632415K11Rik|Kiaa1609	TBC/LysM associated domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-100666424-3	chr15	100666306	100666506	+	893.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001270537, intron 1 of 10)	intron (NM_001270537, intron 1 of 10)	3094.0	NM_001270537	668218.0	Mm.451225	NM_001270537	ENSMUSG00000098112	Bin2	-	bridging integrator 2	protein-coding	1.24863706878207	1.37743857664284	2.19123443767296	1.79236975081204	2.19335288484743	2.47965654363427	1.10081997647619	1.66197603978744	0.696068317577572	0.530864973727508	0.950644470863081
Merged-chr10-81317793-2	chr10	81317693	81317893	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008844, exon 18 of 18)	3' UTR (NM_008844, exon 18 of 18)	-3310.0	NM_027381	70312.0	Mm.87628	NM_027381	ENSMUSG00000034889	Cactin	2510012J08Rik	cactin, spliceosome C complex subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-134689276-4	chr7	134689171	134689371	+	911.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033420, intron 1 of 51)	intron (NM_001033420, intron 1 of 51)	18584.0	NM_001033420	330662.0	Mm.436572	NM_001033420	ENSMUSG00000058325	Dock1	9130006G06Rik|AI854900|D630004B07Rik|b2b3190Clo	dedicator of cytokinesis 1	protein-coding	3.37209842416551	2.67242130228797	3.57411269925287	3.33859906120084	2.95757740982129	3.20890084711641	3.37798290320879	2.90452102387583	-0.275654173529795	0.646061180209983	0.984116759910594
Merged-chr11-73007931-2	chr11	73007831	73008031	+	980.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_008771, intron 1 of 11)	intron (NM_008771, intron 1 of 11)	8786.0	NM_008771	18436.0	Mm.25722	NM_008771	ENSMUSG00000020787	P2rx1	AI323649|BB122383|P2x|Pdcd3|RP-2	purinergic receptor P2X, ligand-gated ion channel, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-11468033-2	chr16	11467933	11468133	+	642.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_028964, intron 13 of 20)	intron (NM_028964, intron 13 of 20)	62385.0	NM_001290148	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-67245635-7	chr18	67245520	67245720	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001357518, exon 1 of 11)	5' UTR (NM_001357518, exon 1 of 11)	210.0	NM_172630	225651.0	Mm.235792	NM_172630	ENSMUSG00000062526	Mppe1	Pgap5	metallophosphoesterase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-55016694-4	chr13	55016591	55016791	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001206392, intron 1 of 17)	intron (NM_001206392, intron 1 of 17)	4128.0	NM_001206390	212032.0	Mm.267479	NM_001033245	ENSMUSG00000025877	Hk3	HK III|HK-III	hexokinase 3	protein-coding	4.25636587608862	2.16383930649993	3.33196305254051	3.50145423197485	3.80160667502246	3.66920552916711	4.15717671626972	4.0901219620741	0.59815813932312	0.298671448447562	0.800257675359925
Merged-chr1-170446875-2	chr1	170446775	170446975	+	854.9166869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001109985, intron 2 of 9)	intron (NM_001109985, intron 2 of 9)	110235.0	NM_027528	70729.0	Mm.409310	NM_027528	ENSMUSG00000038473	Nos1ap	6330408P19Rik|Capon	nitric oxide synthase 1 (neuronal) adaptor protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-55871288-2	chr7	55871188	55871388	+	625.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164661, intron 2 of 31)	intron (NM_001164661, intron 2 of 31)	29217.0	NM_001164661	20430.0	Mm.37249	NM_011370	ENSMUSG00000030447	Cyfip1	E030028J09Rik|P140SRA-1|P140sra1|Shyc|Sra-1|Sra1|l(7)1Rl|l71Rl|l7Rl1|mKIAA0068|pl-1	cytoplasmic FMR1 interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152686094-4	chr1	152686015	152686215	+	929.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346117, intron 1 of 18)	intron (NM_001346117, intron 1 of 18)	-60898.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-13302004-2	chr9	13301904	13302104	+	560.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55048.0	NM_025534	66396.0	Mm.290620	NM_025534	ENSMUSG00000079084	Ccdc82	2310043N13Rik	coiled-coil domain containing 82	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-66083527-4	chr5	66083442	66083642	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139065, intron 2 of 6)	B3|SINE|B2	14637.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167934256-2	chr2	167934156	167934356	+	857.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_011201, intron 1 of 8)	intron (NM_011201, intron 1 of 8)	1929.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-18292168-4	chr9	18292057	18292257	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025844)	promoter-TSS (NM_025844)	-110.0	NM_025844	66917.0	Mm.103534	NM_025844	ENSMUSG00000001774	Chordc1	1110001O09Rik|AA409036|Chp-1|morgana	cysteine and histidine-rich domain (CHORD)-containing, zinc-binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101423376-2	chr7	101423276	101423476	+	636.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001008548, intron 1 of 30)	intron (NM_001008548, intron 1 of 30)	1685.0	NR_152192	207728.0	Mm.247564	NM_001008548	ENSMUSG00000030653	Pde2a	CGS-PDE|cGSPDE	phosphodiesterase 2A, cGMP-stimulated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32383898-2	chr2	32383798	32383998	+	606.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_008491)	TTS (NM_008491)	-1983.0	NM_198001	73737.0	Mm.27608	NM_198001	ENSMUSG00000039195	1110008P14Rik	C79326	RIKEN cDNA 1110008P14 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-132145263-6	chr2	132145235	132145435	+	793.049988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355430)	promoter-TSS (NM_001355430)	-15.0	NM_001355430	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-59342230-4	chr3	59342144	59342344	+	843.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162884, intron 1 of 6)	L1MA4A|LINE|L1	2012.0	NM_001162884	242050.0	Mm.228086	NM_001162884	ENSMUSG00000036334	Igsf10	6530405F15Rik|9030224D03|AA409708|AA536958|AI414626|Adlican2|CMF608	immunoglobulin superfamily, member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-20699364-3	chr9	20699278	20699478	+	664.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357639, intron 1 of 5)	LTR33A_|LTR|ERVL	27625.0	NM_001357635	244723.0	Mm.293552	NM_173777	ENSMUSG00000032172	Olfm2	A030009A06Rik	olfactomedin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-48537106-3	chr2	48536996	48537196	+	942.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	-277013.0	NM_007396	11480.0	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-18090298-4	chr16	18090173	18090373	+	799.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1083.0	NM_011172	19125.0	Mm.28456	NM_011172	ENSMUSG00000003526	Prodh	Pro-1|Pro1|Ym24d07	proline dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32547831-1	chr2	32547731	32547931	+	921.0	f0_balb.idr	intron (NM_153560, intron 1 of 10)	intron (NM_153560, intron 1 of 10)	12472.0	NM_153560	98952.0	Mm.4065	NM_153560	ENSMUSG00000039157	Fam102a	AI426465|C230093N12Rik|Eeig1	family with sequence similarity 102, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-134493613-2	chr1	134493513	134493713	+	600.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1047.0	NM_145510	98710.0	Mm.198119	NM_145510	ENSMUSG00000042229	Rabif	AI842864|AW549708|E130318E12Rik|MSS4|RASGFR3	RAB interacting factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21724321-4	chr9	21724166	21724366	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252659, intron 1 of 17)	intron (NM_001252659, intron 1 of 17)	690.0	NM_010700	16835.0	Mm.3213	NM_010700	ENSMUSG00000032193	Ldlr	Hlb301	low density lipoprotein receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106994464-4	chr11	106994341	106994541	+	970.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010655, intron 3 of 10)	Lx8|LINE|L1	5084.0	NM_010655	16647.0	Mm.12508	NM_010655	ENSMUSG00000018362	Kpna2	2410044B12Rik|IPOA1|PTAC58|Rch1	karyopherin (importin) alpha 2	protein-coding	2.72544221088496	2.85093294312248	3.19568076031519	3.03481277909859	2.56286801904528	1.60955679878983	2.66365308557237	2.88516423787321	-0.853439302059646	0.253846911313078	0.751694505775946
Merged-chr14-50833244-1	chr14	50833144	50833344	+	544.0	f1_c57bl6.idr	intron (NM_009351, intron 43 of 54)	MIRb|SINE|MIR	25328.0	NM_009632	11546.0	Mm.281482	NM_009632	ENSMUSG00000036023	Parp2	ADPRT-2|ARTD2|Adprt2|Adprtl2|Aspartl2|C78626|PARP-2|mPARP-2|pADPRT-2	poly (ADP-ribose) polymerase family, member 2	protein-coding	-0.0931992970260876	0.255623973961783	-0.220584215142673	0.285961743095938	-0.228369645963296	-0.0270152439653054	-0.219658520095845	-0.223252629384247	-2.72877262843654	0.23027990027583	1
Merged-chr3-104638568-4	chr3	104638435	104638635	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009196)	promoter-TSS (NM_009196)	-129.0	NM_009196	20501.0	Mm.9086	NM_009196	ENSMUSG00000032902	Slc16a1	AL022710|Mct1	solute carrier family 16 (monocarboxylic acid transporters), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-36124689-2	chr8	36124522	36124722	+	802.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172911, intron 3 of 5)	intron (NM_172911, intron 3 of 5)	29794.0	NM_172911	244418.0	Mm.244971	NM_172911	ENSMUSG00000050271	Prag1	9830148H23|D8Ertd82e|NACK|Sgk223|mFLJ00269	PEAK1 related kinase activating pseudokinase 1	protein-coding	-0.856514135634246	-1.09469227775237	-1.10552271286179	-0.697223595536493	-1.11557875604084	-1.09234527728392	-1.10307093974939	-1.11268246321507	-2.58516358545631	0.423881157370444	1
Merged-chr6-39241780-4	chr6	39241651	39241851	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34978.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-101010810-4	chr3	101010710	101010910	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167906, intron 6 of 8)	intron (NM_001167906, intron 6 of 8)	18685.0	NM_001167906	630146.0	Mm.190915	NM_001099332	ENSMUSG00000086564	Cd101	EWI-101|Gm1016|Gm734|Igsf2	CD101 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124620660-2	chr5	124620560	124620760	+	800.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026486, intron 13 of 18)	intron (NM_026486, intron 13 of 18)	-8392.0	NM_011596	21871.0	Mm.1158	NM_011596	ENSMUSG00000038023	Atp6v0a2	8430408C20Rik|AI385560|ATP6a2|AW489264|Atp6n1d|Atp6n2|C76904|ISF|J6B7|SHIF|Stv1|TJ6M|TJ6s|Tj6|V-ATPase 116 kDa|V-ATPase a2	ATPase, H+ transporting, lysosomal V0 subunit A2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-111429192-1	chr9	111429092	111429292	+	563.0	f0_balb.idr	Intergenic	Intergenic	-9889.0	NM_172928	245038.0	Mm.26361	NM_172928	ENSMUSG00000032500	Dclk3	BC056929|C730036H08|Dcamkl3	doublecortin-like kinase 3	protein-coding	0.630146292770058	1.63656578844692	0.659595387103157	0.648684034452494	0.818374948954517	1.65214268686524	1.35668985642559	1.17633622618794	1.15783912328853	0.444905691399082	0.912437002106983
Merged-chr11-119085627-6	chr11	119085552	119085752	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007625, intron 2 of 4)	C-rich|Low_complexity|Low_complexity	585.0	NM_007625	12418.0	Mm.268070	NM_007625	ENSMUSG00000039989	Cbx4	MPc2|PC2	chromobox 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-29738486-2	chr2	29738386	29738586	+	835.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001039087, exon 26 of 26)	3' UTR (NM_001039087, exon 26 of 26)	-23042.0	NM_001177392	433416.0	Mm.330112	NM_001034887	ENSMUSG00000075425	Gm13547	-	predicted gene 13547	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-145244283-2	chr4	145244183	145244383	+	901.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_011610, intron 1 of 9)	intron (NM_011610, intron 1 of 9)	2587.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-44280952-1	chr19	44280852	44281052	+	793.799988	f0_balb.idr	Intergenic	Intergenic	-12724.0	NM_009128	20250.0	Mm.487021	NM_009128	ENSMUSG00000025203	Scd2	Mir5114|Scd-2|mir-5114|swty	stearoyl-Coenzyme A desaturase 2	protein-coding	0.592006017588267	0.352871208047255	0.517949759271022	0.341397074143109	0.476170367683685	0.704260789644604	0.797880139203073	0.961286824176181	2.04361380803023	0.235445252571066	1
Merged-chr7-112183394-3	chr7	112183315	112183515	+	944.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23933.0	NM_001360257	50781.0	Mm.55143	NM_015814	ENSMUSG00000030772	Dkk3	AW061014|C87148|dkk-3|mDkk-3	dickkopf WNT signaling pathway inhibitor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-14846282-3	chr8	14846163	14846363	+	869.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172910, intron 15 of 15)	intron (NM_172910, intron 15 of 15)	-42273.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-81867327-2	chr7	81867227	81867427	+	671.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291282, intron 3 of 9)	intron (NM_001291282, intron 3 of 9)	4640.0	NM_001291282	107769.0	Mm.221412	NM_145375	ENSMUSG00000038623	Tm6sf1	AI428514|BC023123|C630016D09Rik	transmembrane 6 superfamily member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-81261761-1	chr7	81261661	81261861	+	645.0	f0_balb.idr	intron (NM_008803, intron 1 of 21)	intron (NM_008803, intron 1 of 21)	47957.0	NM_008803	18584.0	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89315302-2	chr3	89315202	89315402	+	689.166626	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010108, exon 5 of 5)	3' UTR (NM_010108, exon 5 of 5)	7577.0	NM_010108	13638.0	Mm.331159	NM_010108	ENSMUSG00000028039	Efna3	AW494418|EFL-2|Ehk1-L|Epl3|LERK-3	ephrin A3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-67899010-4	chr14	67898918	67899118	+	956.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177780, intron 1 of 51)	intron (NM_177780, intron 1 of 51)	34554.0	NM_177780	68813.0	Mm.258155	NM_177780	ENSMUSG00000044447	Dock5	1110060D06Rik|AI666732|AI956923|BC016533|E130320D18|lr2|rlc	dedicator of cytokinesis 5	protein-coding	0.146460523589758	0.207330649459857	0.026095176810619	0.0226216826127691	0.541012814226065	0.362819288655463	0.191849135639707	0.174780102530517	2.16502421761788	0.268850671865068	1
Merged-chr18-36364344-2	chr18	36364244	36364444	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081365, intron 1 of 2)	intron (NM_001081365, intron 1 of 2)	15720.0	NM_001081365	66060.0	Mm.272527	NM_001081365	ENSMUSG00000046727	Cystm1	0610010O12Rik	cysteine-rich transmembrane module containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28593592-4	chr7	28593466	28593666	+	926.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027470, intron 1 of 9)	intron (NM_027470, intron 1 of 9)	4618.0	NM_027470	70584.0	Mm.21876	NM_027470	ENSMUSG00000030602	Pak4	5730488L07Rik|AW555722|mKIAA1142	p21 (RAC1) activated kinase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30985433-4	chr2	30985339	30985539	+	825.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028846, intron 1 of 24)	intron (NM_028846, intron 1 of 24)	3160.0	NM_028846	74270.0	Mm.346654	NM_028846	ENSMUSG00000026854	Usp20	1700055M05Rik|AI467231|Vdu2	ubiquitin specific peptidase 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-34645858-2	chr2	34645758	34645958	+	791.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	109374.0	NM_001356441	66691.0	Mm.156452	NM_025709	ENSMUSG00000026867	Gapvd1	2010005B09Rik|4432404J10Rik|AW108497|Gapex-5|RAP6|RME-6|mKIAA1521	GTPase activating protein and VPS9 domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-60537612-4	chr11	60537522	60537722	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172943)	promoter-TSS (NM_172943)	-61.0	NM_172943	268420.0	Mm.262056	NM_172943	ENSMUSG00000042650	Alkbh5	AW050020|AW215868|Abh5|E130207K11|Ofoxd	alkB homolog 5, RNA demethylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5414969-4	chr19	5414870	5415070	+	907.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027938, intron 1 of 3)	AT_rich|Low_complexity|Low_complexity	8155.0	NR_027938	74931.0	Mm.388511	NR_015545	ENSMUSG00000086938	4930481A15Rik	-	RIKEN cDNA 4930481A15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-43786443-3	chr19	43786343	43786543	+	806.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013806, intron 2 of 31)	intron (NM_013806, intron 2 of 31)	4135.0	NM_013806	12780.0	Mm.39054	NM_013806	ENSMUSG00000025194	Abcc2	AI173996|Abc30|Cmoat|Mrp2|cMRP	ATP-binding cassette, sub-family C (CFTR/MRP), member 2	protein-coding	1.63339865329913	2.79955974988231	3.08146200778781	1.25162925008115	1.81752437497171	2.91102254678679	1.97930398691446	2.20932532575348	-0.247387460986754	0.79890209620401	0.998431161219273
Merged-chr9-8430350-2	chr9	8430250	8430450	+	554.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-113792.0	NM_013838	22068.0	Mm.325086	NM_013838	ENSMUSG00000031997	Trpc6	AV025995|LLHWJM002|LLHWJM003|LLHWJM004|TRP-6|Trrp6|mtrp6	transient receptor potential cation channel, subfamily C, member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80370193-4	chr7	80370037	80370237	+	911.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172903, intron 2 of 23)	RSINE1|SINE|B4	1238.0	NM_172903	140481.0	Mm.269245	NM_172903	ENSMUSG00000038886	Man2a2	1700052O22Rik|4931438M07Rik|AI480988|MX|Man IIx	mannosidase 2, alpha 2	protein-coding	1.44572068989463	1.80799614368812	2.67034421416084	1.08260401416114	1.27268818917366	2.35759492382971	1.58066144570248	2.37893409407619	0.190875434576706	0.862607209936227	0.998431161219273
Merged-chr4-130798535-1	chr4	130798435	130798635	+	813.0	f0_balb.idr	intron (NM_011520, intron 1 of 4)	intron (NM_011520, intron 1 of 4)	5998.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-45405354-4	chr9	45405259	45405459	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007503)	promoter-TSS (NM_007503)	-718.0	NM_007503	11936.0	Mm.22742	NM_007503	ENSMUSG00000059412	Fxyd2	Atp1g1	FXYD domain-containing ion transport regulator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-3080754-2	chr17	3080677	3080877	+	1000.0	f0_balb.idr|f1_balb.idr	intron (NR_003519, intron 2 of 7)	intron (NR_003519, intron 2 of 7)	3406.0	NR_003519	328734.0	Mm.335641	NR_003519		Pisd-ps2	D030013I16Rik	phosphatidylserine decarboxylase, pseudogene 2	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-69987771-4	chr9	69987668	69987868	+	986.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1698.0	NM_016787	12175.0	Mm.159777	NM_016787	ENSMUSG00000011958	Bnip2	5730523P12Rik|BNIP2beta|Nip21	BCL2/adenovirus E1B interacting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-32343684-3	chr12	32343595	32343795	+	921.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MERVL_2A-int|LTR|ERVL	-35094.0	NM_001162903	72123.0	Mm.341352	NM_028111	ENSMUSG00000090946	Ccdc71l	2010109K11Rik|AV375874	coiled-coil domain containing 71 like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-58301221-4	chr11	58301082	58301282	+	928.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5887.0	NM_182996	103836.0	Mm.41440	NM_182996	ENSMUSG00000037243	Zfp692	AI746306|AI839920|Zfp692-ps|Znf692	zinc finger protein 692	protein-coding	3.59315050729179	1.84201278089763	4.50110054850299	3.5746013613478	3.80015063690071	3.36221625598733	3.70772171727119	4.48543521075949	0.327624411010442	0.606177310097836	0.974576632476413
Merged-chr9-21155010-4	chr9	21154901	21155101	+	824.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-5095.0	NM_016742	12539.0	Mm.32331	NM_016742	ENSMUSG00000019471	Cdc37	p50|p50Cdc37	cell division cycle 37	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-17686768-2	chr10	17686668	17686868	+	749.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1A|DNA|hAT-Charlie	-36460.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75510123-5	chr11	75510083	75510283	+	814.56665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001029938)	promoter-TSS (NM_001029938)	89.0	NM_001029938	280408.0	Mm.41416	NM_001029938	ENSMUSG00000038195	Rilp	AI835553|Gm857	Rab interacting lysosomal protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-8525501-2	chr12	8525401	8525601	+	575.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14065.0	NM_001038660	328059.0	Mm.46326	NM_177802	ENSMUSG00000020600	Slc7a15	Arpat	solute carrier family 7 (cationic amino acid transporter, y+ system), member 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111743521-4	chr12	111743421	111743621	+	857.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163388, intron 4 of 5)	L1MB3|LINE|L1	-15328.0	NM_001361612	16593.0	Mm.278357	NM_008450	ENSMUSG00000021288	Klc1	AI874768|Kns2	kinesin light chain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-88865451-2	chr15	88865351	88865551	+	687.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_145478, exon 6 of 6)	3' UTR (NM_145478, exon 6 of 6)	3257.0	NM_145478	223775.0	Mm.400129	NM_145478	ENSMUSG00000035828	Pim3	BC026639|Kid1	proviral integration site 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-86161125-4	chr15	86161019	86161219	+	999.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145475, intron 3 of 12)	L1M4|LINE|L1	-24609.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21314803-2	chr9	21314703	21314903	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-2470.0	NM_009678	11768.0	Mm.22239	NM_009678	ENSMUSG00000003309	Ap1m2	D9Ertd818e|[m]1B|mu1B	adaptor protein complex AP-1, mu 2 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-82327908-2	chr17	82327808	82328008	+	809.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-589521.0	NM_011406	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-19921688-2	chr11	19921551	19921751	+	794.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-2791.0	NM_033523	114716.0	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding	-1.58994551673671	-1.55912852307891	-1.56844783632235	-1.57610299769523	-1.18549093183599	-1.55710898902261	-1.56633814807757	-1.57473272746952	1.78703309985663	0.610309988231842	1
Merged-chr1-43327318-3	chr1	43327210	43327410	+	745.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC1|LINE|L1	-118441.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-56535221-3	chr19	56535116	56535316	+	899.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153440, intron 8 of 9)	L1MB7|LINE|L1	12906.0	NM_001360437	55947.0	Mm.2805	NM_018831	ENSMUSG00000025077	Dclre1a	2810043H12Rik|AU022226|Pso2|Smn1a|Snm1|mKIAA0086	DNA cross-link repair 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91083088-4	chr2	91082983	91083183	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12768.0	NM_001290765	68427.0	Mm.192375	NM_026721	ENSMUSG00000002105	Slc39a13	1100001L14Rik|AA387663|ZIP-13|ZIP13	solute carrier family 39 (metal ion transporter), member 13	protein-coding	3.59570976703065	3.23152207852308	2.01022324676489	3.38732263226401	3.38370854363769	3.54380283497711	3.42860847840489	3.73884394512169	0.537905134241519	0.378279224379669	0.871397690824179
Merged-chr12-110694645-2	chr12	110694545	110694745	+	988.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_010480, exon 4 of 11)	exon (NM_010480, exon 4 of 11)	1750.0	NM_010480	15519.0	Mm.1843	NM_010480	ENSMUSG00000021270	Hsp90aa1	86kDa|89kDa|AL024080|AL024147|Hsp86-1|Hsp89|Hsp90|Hspca|hsp4	heat shock protein 90, alpha (cytosolic), class A member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-25196000-4	chr2	25195907	25196107	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146115, intron 1 of 1)	intron (NM_146115, intron 1 of 1)	806.0	NM_146115	227612.0	Mm.119747	NM_146115	ENSMUSG00000059555	Tor4a	A830007P12Rik	torsin family 4, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-128658087-2	chr4	128657987	128658187	+	572.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001195130, intron 1 of 14)	ID_B1|SINE|B4	3385.0	NM_001195130	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-6581089-4	chr15	6580960	6581160	+	864.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011815, intron 1 of 17)	intron (NM_011815, intron 1 of 17)	1213.0	NM_011815	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-32780500-4	chr19	32780426	32780626	+	932.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008960, intron 2 of 8)	intron (NM_008960, intron 2 of 8)	22949.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-25499843-2	chr2	25499743	25499943	+	603.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013908)	promoter-TSS (NM_013908)	663.0	NM_027062	69379.0	Mm.24596	NM_027062	ENSMUSG00000015083	C8g	-	complement component 8, gamma polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-9281475-3	chr13	9281388	9281588	+	716.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081426, intron 1 of 36)	intron (NM_001081426, intron 1 of 36)	4963.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-30004813-4	chr17	30004725	30004925	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_148926)	promoter-TSS (NM_148926)	-214.0	NM_148926	21769.0	Mm.220972	NM_148926	ENSMUSG00000044477	Zfand3	AW539211|TEG-27|Tex27	zinc finger, AN1-type domain 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-35063230-4	chr9	35063100	35063300	+	770.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009178, intron 1 of 10)	MYSERV6-int|LTR|ERVK	-53528.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	3.20380058860402	2.4686268596857	2.52550810265756	2.45509264470615	3.38387846035501	2.48657829092864	2.40504490694944	2.69832243233963	0.201490849462936	0.784835888024958	0.998431161219273
Merged-chr17-25728204-2	chr17	25728104	25728304	+	754.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145409)	promoter-TSS (NM_145409)	487.0	NM_001357176	106707.0	Mm.24603	NM_028009	ENSMUSG00000041199	Rpusd1	2310051D06Rik|AU019540|Rlucl	RNA pseudouridylate synthase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-123034321-4	chr8	123034214	123034414	+	939.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 1 of 12)	intron (NM_001081379, intron 1 of 12)	7970.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-101740250-4	chr12	101740142	101740342	+	981.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21719.0	NM_001082976	74413.0	Mm.275939	NM_028924	ENSMUSG00000021187	Tc2n	4933406D09Rik|Mtac2d1|Tac2-N	tandem C2 domains, nuclear	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-69423016-4	chr12	69422875	69423075	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50825.0	NM_007481	11845.0	Mm.27308	NM_007481	ENSMUSG00000044147	Arf6	AI788669|AW496366	ADP-ribosylation factor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-73254033-2	chr14	73253933	73254133	+	664.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009029, intron 17 of 26)	intron (NM_009029, intron 17 of 26)	16142.0	NM_175116	67168.0	Mm.390681	NM_175116	ENSMUSG00000033446	Lpar6	2610302I02Rik|P2ry5|P2y5	lysophosphatidic acid receptor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83789433-4	chr11	83789319	83789519	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35782.0	NM_145432	217026.0	Mm.117874	NM_145432	ENSMUSG00000000976	Heatr6	2700008B19Rik|BB135312|BB249351	HEAT repeat containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-99336320-3	chr4	99336218	99336418	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RCHARR1|DNA|hAT-Charlie	142171.0	NM_001145967	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	0.327916462519841	0.362324249821833	1.34996853206124	0.986909566868658	0.33012645189217	0.364786936967939	1.36645524819381	0.344130476265271	-0.567869142471789	0.765493684870574	0.998431161219273
Merged-chr17-43060889-3	chr17	43060777	43060977	+	985.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178589, intron 3 of 5)	intron (NM_178589, intron 3 of 5)	44322.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	1.32004017413588	2.69613912151154	2.59991350518262	1.89275441893187	2.87952322756548	3.23581964403481	2.48833492266775	3.73219183833198	1.76314098755407	0.0300086660934052	0.237002178717739
Merged-chr14-17899783-3	chr14	17899668	17899868	+	953.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113417, intron 2 of 9)	intron (NM_001113417, intron 2 of 9)	-81876.0	NM_009380	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-9810850-2	chr1	9810750	9810950	+	550.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177547, intron 1 of 16)	intron (NM_177547, intron 1 of 16)	12720.0	NM_177547	170755.0	Mm.336410	NM_133220	ENSMUSG00000025915	Sgk3	2510015P22Rik|A330005P07Rik|Cisk|fy|fz	serum/glucocorticoid regulated kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-45528630-6	chr4	45528526	45528726	+	891.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033306, intron 1 of 5)	intron (NM_001033306, intron 1 of 5)	2202.0	NM_001033306	230126.0	Mm.251716	NM_001033306	ENSMUSG00000044813	Shb	BC028832	src homology 2 domain-containing transforming protein B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-86884174-1	chr3	86884074	86884274	+	871.0	f0_balb.idr	intron (NM_001195500, intron 2 of 11)	intron (NM_001195500, intron 2 of 11)	36710.0	NM_001195499	70762.0	Mm.44490	NM_027539	ENSMUSG00000028078	Dclk2	6330415M09Rik|AU044875|CL2|CLICK2|Click-II|Dcamkl2	doublecortin-like kinase 2	protein-coding	1.11795353434394	2.01280650457522	1.21457476065764	1.45736222868333	2.66909767547626	3.3077765117769	3.06129501617505	2.64254482598138	3.60522435690146	0.000337920471371529	0.0080657224446597
Merged-chr3-60569601-1	chr3	60569501	60569701	+	632.0	f0_balb.idr	intron (NM_001310514, intron 2 of 8)	intron (NM_001310514, intron 2 of 8)	68422.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-76532939-4	chr16	76532838	76533038	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15857.0	NR_155449	102632730.0		NR_155449		Gm30726	-	predicted gene, 30726	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-100934770-4	chr14	100934655	100934855	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	265314.0	NM_029680	76627.0	Mm.31415	NM_029680	ENSMUSG00000042888	Prr30	1700110M21Rik	proline rich 30	protein-coding	3.89660781560453	3.83776103585799	4.43810344010094	4.41910319267317	4.41391906137706	4.18802067847	4.7029895958982	4.76890245943013	0.471241761276884	0.243286218590324	0.740751247850617
Merged-chr13-13526081-4	chr13	13526001	13526201	+	860.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64308.0	NM_010748	17101.0	Mm.342337	NM_010748	ENSMUSG00000019726	Lyst	D13Sfk13|beige|bg	lysosomal trafficking regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-74963989-2	chr14	74963889	74964089	+	757.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11097.0	NR_046078	100043169.0	Mm.145900	NR_046078	ENSMUSG00000115019	Gm4278	-	predicted gene 4278	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21969416-4	chr9	21969265	21969465	+	914.775024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-5789.0	NM_010149	13857.0	Mm.2653	NM_010149	ENSMUSG00000006235	Epor	-	erythropoietin receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-59764707-6	chr1	59764602	59764802	+	868.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007561, exon 1 of 13)	exon (NM_007561, exon 1 of 13)	423.0	NM_007561	12168.0	Mm.7106	NM_007561	ENSMUSG00000067336	Bmpr2	2610024H22Rik|AL117858|AW546137|BB189135|BMP-2|BMPR-2|BMPR-II|BMPRII|BRK-3|Gm20272	bone morphogenetic protein receptor, type II (serine/threonine kinase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-13070582-4	chr6	13070470	13070670	+	862.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027992, intron 2 of 8)	intron (NM_027992, intron 2 of 8)	811.0	NM_027992	71900.0	Mm.27742	NM_027992	ENSMUSG00000029571	Tmem106b	2310036D22Rik|5830455K21Rik|6430519M21Rik|AI428776|AI661344	transmembrane protein 106B	protein-coding	-0.590353687393807	-0.74000206384626	0.183178148405157	-0.747404082086457	-0.752002080152052	-0.739066230707813	-0.743248427607196	-0.746837928697335	-3.45247666956327	0.213683577548399	1
Merged-chr10-78164113-4	chr10	78164025	78164225	+	884.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138601, intron 5 of 6)	intron (NM_138601, intron 5 of 6)	5643.0	NM_138601	28295.0	Mm.268691	NM_138601	ENSMUSG00000053329	D10Jhu81e	C21orf33|ES1	DNA segment, Chr 10, Johns Hopkins University 81 expressed	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-112670347-2	chr12	112670247	112670447	+	780.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001331107, intron 2 of 13)	intron (NM_001331107, intron 2 of 13)	3929.0	NM_001165894	11651.0	Mm.6645	NM_009652	ENSMUSG00000001729	Akt1	Akt|LTR-akt|PKB|PKB/Akt|PKBalpha|Rac	thymoma viral proto-oncogene 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124873269-3	chr5	124873203	124873403	+	765.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081750, intron 2 of 3)	intron (NM_001081750, intron 2 of 3)	10598.0	NM_001081750	269704.0	Mm.138617	NM_001081750	ENSMUSG00000079215	Zfp664	AW060232|D930038J03Rik|ZFOC1|Znf664	zinc finger protein 664	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-78894321-4	chr12	78894226	78894426	+	939.55835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013738, intron 5 of 8)	intron (NM_013738, intron 5 of 8)	12612.0	NM_013738	27260.0	Mm.103380	NM_013738	ENSMUSG00000021118	Plek2	-	pleckstrin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-67142381-1	chr6	67142281	67142481	+	547.0	f0_balb.idr	Intergenic	Intergenic	-104974.0	NM_007836	13197.0	Mm.72235	NM_007836	ENSMUSG00000036390	Gadd45a	AA545191|Ddit1|GADD45	growth arrest and DNA-damage-inducible 45 alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116274546-2	chr11	116274452	116274652	+	972.5	f0_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146032)	promoter-TSS (NM_146032)	-335.0	NM_146032	217337.0	Mm.29655	NM_146032	ENSMUSG00000020780	Srp68	2610024I03Rik	signal recognition particle 68	protein-coding	2.92209936164829	2.27301465187509	3.005238246606	3.20620823932455	2.71904081929768	2.28926337998228	2.51162794612705	2.14966950902492	-0.927155996275134	0.209316079100229	0.698768591275612
Merged-chr5-149242646-1	chr5	149242546	149242746	+	698.0	f0_balb.idr	Intergenic	Intergenic	-22358.0	NM_001308462	11690.0	Mm.19844	NM_009663	ENSMUSG00000060063	Alox5ap	Flap	arachidonate 5-lipoxygenase activating protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-86996560-4	chr11	86996441	86996641	+	774.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2779.0	NM_001005341	77864.0	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-40580505-4	chr8	40580426	40580626	+	993.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040699, intron 7 of 13)	intron (NM_001040699, intron 7 of 13)	54266.0	NM_001040699	54384.0	Mm.294871	NM_019433	ENSMUSG00000039431	Mtmr7	-	myotubularin related protein 7	protein-coding	3.9742532771676	2.85411986473316	3.27970832967871	4.01651596601561	4.14131568534495	4.16775646033014	4.15512058614308	3.72242904020855	0.602809796894869	0.229646482953358	0.723302022000628
Merged-chr12-44858309-4	chr12	44858202	44858402	+	990.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144552, intron 5 of 5)	intron (NM_144552, intron 5 of 5)	216181.0	NM_144552	217517.0	Mm.285400	NM_144552	ENSMUSG00000046314	Stxbp6	BC024598|C85317	syntaxin binding protein 6 (amisyn)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89459165-4	chr3	89459053	89459253	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026784)	promoter-TSS (NM_026784)	35.0	NM_026784	68603.0	Mm.34242	NM_026784	ENSMUSG00000027952	Pmvk	1110011E12Rik|2900002L22Rik|AV001327|PMK|PMKA|PMKASE	phosphomevalonate kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-110890017-5	chr9	110889925	110890125	+	848.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153354, intron 12 of 25)	intron (NR_153354, intron 12 of 25)	9703.0	NM_001146060	235633.0	Mm.86338	NM_146228	ENSMUSG00000044037	Als2cl	79H19D|79H19E|BC022645|D930044G19Rik|mRn.49018	ALS2 C-terminal like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-3403846-7	chr9	3403758	3403958	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027545)	promoter-TSS (NM_027545)	-227.0	NM_027545	244672.0	Mm.245482	NM_027545	ENSMUSG00000025898	Cwf19l2	3230401L03Rik|9030209E10	CWF19-like 2, cell cycle control (S. pombe)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-125575801-1	chr7	125575701	125575901	+	694.0	f1_c57bl6.idr	exon (NM_001008700, exon 11 of 11)	exon (NM_001008700, exon 11 of 11)	23519.0	NM_001008700	16190.0	Mm.233802	NM_010557	ENSMUSG00000030748	Il4ra	CD124|Il4r	interleukin 4 receptor, alpha	protein-coding	0.295793268452761	0.679975408196991	0.891511786750653	0.304979919271127	0.791804094995914	0.954365136696561	0.312074034144127	0.305944799001945	0.324266263795517	0.864368387092271	1
Merged-chr5-143487199-2	chr5	143487099	143487299	+	599.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_144915, exon 8 of 15)	exon (NM_144915, exon 8 of 15)	22706.0	NM_144915	231871.0	Mm.469963	NM_144915	ENSMUSG00000039206	Daglb	E330036I19Rik	diacylglycerol lipase, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16048321-4	chr7	16048202	16048402	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23543.0	NM_001347559	666528.0	Mm.290718	NM_001099277	ENSMUSG00000078796	Zfp541	EG666528|Znf541	zinc finger protein 541	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-8004626-3	chr9	8004498	8004698	+	742.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001171147)	promoter-TSS (NM_001171147)	-2.0	NM_001171147	22601.0	Mm.221992	NM_009534	ENSMUSG00000053110	Yap1	AI325207|Yap|Yap65|Yki|Yorkie	yes-associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135309295-2	chr4	135309195	135309395	+	755.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36535.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-10462611-1	chr10	10462511	10462711	+	1000.0	f0_c57.idr	intron (NM_001127353, intron 1 of 36)	intron (NM_001127353, intron 1 of 36)	9703.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	1.14409098457421	1.34547599733883	2.08475426782804	0.52149595662866	0.503054669799433	1.02957022583865	0.53771685943554	0.523729795750651	-3.35554567328393	0.0448596449533734	0.304621623569932
Merged-chr2-91033279-2	chr2	91033179	91033379	+	763.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-2348.0	NM_009023	19400.0	Mm.1272	NM_009023	ENSMUSG00000002104	Rapsn	43kDa|Nraps|Raps|rapsyn	receptor-associated protein of the synapse	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-128049002-4	chr7	128048886	128049086	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-13654.0	NM_001082960	16409.0	Mm.262106	NM_008401	ENSMUSG00000030786	Itgam	CD11b/CD18|CR3|CR3A|Cd11b|F730045J24Rik|Ly-40|MAC1|Mac-1|Mac-1a	integrin alpha M	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-109611744-4	chr11	109611644	109611844	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145940)	promoter-TSS (NM_145940)	-355.0	NM_145940	52639.0	Mm.35817	NM_145940	ENSMUSG00000041895	Wipi1	4930533H01Rik|AW411817|D11Ertd498e	WD repeat domain, phosphoinositide interacting 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-20845513-3	chr14	20845392	20845592	+	851.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8830.0	NM_008873	18792.0	Mm.4183	NM_008873	ENSMUSG00000021822	Plau	u-PA|uPA	plasminogen activator, urokinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34403338-1	chr17	34403238	34403438	+	559.0	f1_balb.idr	intron (NM_001163855, intron 1 of 23)	RodERV21-int|LTR|ERV1	4518.0	NM_001163855	407788.0	Mm.73205	NM_001001177	ENSMUSG00000057246	BC051142	NG8|TSBP|Tesb|Tesbp	cDNA sequence BC051142	protein-coding	0.845976173065984	2.13573634463757	1.36594895575272	0.879766608959428	1.41824299513526	2.25534019823481	2.34070488894124	0.883211065693373	1.18128236823333	0.366725524718604	0.861862339647405
Merged-chr5-125267224-2	chr5	125267124	125267324	+	725.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	73870.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-40962525-2	chr14	40962425	40962625	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145928, intron 1 of 8)	intron (NM_145928, intron 1 of 8)	4371.0	NM_145928	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-60817040-4	chr10	60816943	60817143	+	967.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029770, intron 1 of 16)	intron (NM_029770, intron 1 of 16)	14538.0	NM_029770	107449.0	Mm.290433	NM_029770	ENSMUSG00000020099	Unc5b	6330415E02Rik|A630020F16|D10Bwg0792e|Unc5h2	unc-5 netrin receptor B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-60627613-4	chr1	60627505	60627705	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60840.0	NM_001045513	77300.0	Mm.440325	NM_001045513	ENSMUSG00000026014	Raph1	9430025M21Rik|C730009O10Rik|Lpd	Ras association (RalGDS/AF-6) and pleckstrin homology domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-110603431-4	chr5	110603236	110603436	+	992.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001122639)	promoter-TSS (NM_001122639)	-169.0	NM_001122639	231605.0	Mm.275748	NM_198306	ENSMUSG00000033316	Galnt9	GalNAc-T9	polypeptide N-acetylgalactosaminyltransferase 9	protein-coding	2.93835639186784	2.52771624906041	2.4431106764419	1.71220978339315	3.1924611483227	2.54624513929811	2.69688811878621	2.25311981195577	0.48556055437047	0.542458680035307	0.954935047166076
Merged-chr3-121580114-4	chr3	121579997	121580197	+	991.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47753.0	NM_145394	213603.0	Mm.33062	NM_145394	ENSMUSG00000039865	Slc44a3	BC010552	solute carrier family 44, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-130807034-4	chr4	130806917	130807117	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011520, intron 1 of 4)	intron (NM_011520, intron 1 of 4)	14480.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166696815-4	chr2	166696694	166696894	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	MTD|LTR|ERVL-MaLR	17038.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-97814687-3	chr4	97814561	97814761	+	884.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010905, intron 2 of 10)	intron (NM_010905, intron 2 of 10)	37035.0	NM_010905	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-55564928-4	chr15	55564913	55565113	+	938.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168250, intron 5 of 16)	intron (NM_001168250, intron 5 of 16)	7605.0	NM_001168250	105837.0	Mm.390829	NM_134092	ENSMUSG00000022369	Mtbp	AI429604|MDM2BP	Mdm2, transformed 3T3 cell double minute p53 binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-102406102-2	chr11	102405961	102406161	+	627.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026542, intron 4 of 11)	B1_Mus1|SINE|Alu	-1074.0	NR_105895	102465561.0		NR_105895	ENSMUSG00000098774	Mir6930	Gm27436|mmu-mir-6930	microRNA 6930	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-25053739-3	chr16	25053630	25053830	+	885.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5909.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-80255134-4	chr15	80255043	80255243	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001287180)	promoter-TSS (NM_001287180)	-41.0	NM_001287180	11911.0	Mm.641	NM_009716	ENSMUSG00000042406	Atf4	Atf-4|C/ATF|CREB2|TAXREB67	activating transcription factor 4	protein-coding	6.32497200113763	6.319369631371	6.69150326836746	6.0858352955386	6.07331282633021	6.23713898357428	6.13101574650288	6.41457002721178	-0.164549992390259	0.450495185805184	0.916730196623235
Merged-chr11-119260571-2	chr11	119260471	119260671	+	631.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175430, intron 17 of 18)	intron (NM_175430, intron 17 of 18)	-7392.0	NM_001159324	14387.0	Mm.4793	NM_008064	ENSMUSG00000025579	Gaa	E430018M07Rik	glucosidase, alpha, acid	protein-coding	0.376088910617478	0.744551283918069	0.00140579932355864	0.544106317329238	-0.00947032385882357	0.00853531916938471	0.0026906268296005	-0.00230763025410738	-4.02291295107049	0.0630645746894618	1
Merged-chr5-142899515-6	chr5	142899456	142899656	+	791.544434	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC1|LINE|L1	-4318.0	NM_001033312	231863.0	Mm.89753	NM_001033312	ENSMUSG00000066640	Fbxl18	AI427077|B130019G13Rik|C330021B20Rik	F-box and leucine-rich repeat protein 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-26710205-1	chr10	26710105	26710305	+	726.0	f1_balb.idr	Intergenic	Intergenic	-35554.0	NR_033633	667572.0	Mm.482728	NR_033633	ENSMUSG00000098179	Gm8709	EG667572	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-76115905-2	chr2	76115805	76116005	+	924.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081033, intron 9 of 19)	intron (NM_001081033, intron 9 of 19)	-133938.0	NM_030188	78802.0	Mm.282339	NM_030188	ENSMUSG00000075271	Ttc30a1	4930506L13Rik	tetratricopeptide repeat domain 30A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55111907-2	chr14	55111807	55112007	+	583.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177049, intron 3 of 5)	intron (NM_177049, intron 3 of 5)	5028.0	NM_177049	319984.0	Mm.19047	NM_177049	ENSMUSG00000022208	Jph4	9330157P13Rik|JP-4|JPHL1	junctophilin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-145200249-4	chr4	145200193	145200393	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5288.0	NM_001276465	230895.0	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-19274211-4	chr2	19274111	19274311	+	998.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081083, intron 10 of 19)	intron (NM_001081083, intron 10 of 19)	-70106.0	NR_126563	108871.0	Mm.107666	NR_126563		4930447M23Rik	-	RIKEN cDNA 4930447M23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-139294253-2	chr4	139294163	139294363	+	925.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_151463, exon 11 of 11)	non-coding (NR_151463, exon 11 of 11)	16445.0	NR_151463	212555.0	Mm.45131	NM_145384	ENSMUSG00000028744	Pqlc2	BC019216	PQ loop repeat containing 2	protein-coding	1.34068327045017	1.06959169204733	1.56801620031976	1.01989093344193	1.61417850545659	1.07581515674128	1.04790543403417	1.3082648209708	0.0715235060746879	0.954484458749713	0.998431161219273
Merged-chr5-90700367-4	chr5	90700247	90700447	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58951.0	NM_009141	20311.0	Mm.4660	NM_009141	ENSMUSG00000029371	Cxcl5	AMCF-II|Cxcl6|ENA-78|GCP-2|LIX|Scyb5|Scyb6	chemokine (C-X-C motif) ligand 5	protein-coding	2.9391002337701	3.37282072997513	2.50529507532534	2.91267500541697	3.24939515181122	3.39662644168272	2.52497453911633	2.92749509855313	0.179025046793664	0.784338763634048	0.998431161219273
Merged-chr9-22327986-4	chr9	22327928	22328128	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	2662.0	NR_033622	625603.0	Mm.37987	NR_033622		Gm6607	EG625603	40S ribosomal protein S20 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-157140620-2	chr1	157140519	157140719	+	921.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177644, exon 18 of 18)	3' UTR (NM_177644, exon 18 of 18)	-31939.0	NM_001305063	73435.0	Mm.116705	NM_028540	ENSMUSG00000026592	Tex35	1700057K13Rik	testis expressed 35	protein-coding	0.588506796469789	0.468060068558229	0.914704045201561	0.454788935737066	1.09925455911967	0.968522509061047	0.642362334334928	0.763496971262366	1.56132594686102	0.336446187456867	1
Merged-chr13-30566460-2	chr13	30566360	30566560	+	616.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1C|Other|Other	-21144.0	NM_025710	66694.0	Mm.181933	NM_025710	ENSMUSG00000038462	Uqcrfs1	4430402G14Rik|AI875505	ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-24987659-7	chr8	24987553	24987753	+	923.334534	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001270996, intron 11 of 21)	Lx4A|LINE|L1	29269.0	NM_001270996	11502.0	Mm.28908	NM_007404	ENSMUSG00000031555	Adam9	AU020942|MDC9|Mltng|mKIAA0021	a disintegrin and metallopeptidase domain 9 (meltrin gamma)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-110072053-2	chr9	110071953	110072153	+	669.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205330, intron 14 of 18)	intron (NM_001205330, intron 14 of 18)	20032.0	NM_001311164	17758.0	Mm.217318	NM_008633	ENSMUSG00000032479	Map4	AA407148|MAP-4|Mtap-4|Mtap4	microtubule-associated protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-125466666-2	chr5	125466566	125466766	+	725.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-9207.0	NM_030210	78894.0	Mm.431573	NM_030210	ENSMUSG00000029482	Aacs	2210408B16Rik|SUR5	acetoacetyl-CoA synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101901772-2	chr7	101901672	101901872	+	810.714294	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081679, intron 2 of 3)	L2c|LINE|L2	2013.0	NM_001282088	791260.0	Mm.475469	NM_001081679	ENSMUSG00000078630	Tomt	Comt2|F930017I19Rik	transmembrane O-methyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-155404332-2	chr2	155404232	155404432	+	618.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001242558, intron 9 of 12)	MIRb|SINE|MIR	22476.0	NM_178111	68728.0	Mm.293605	NM_178111	ENSMUSG00000038375	Trp53inp2	1110029F20Rik|Tp53inp2	transformation related protein 53 inducible nuclear protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-172207386-4	chr1	172207268	172207468	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001329869)	promoter-TSS (NM_001329869)	-564.0	NM_011063	18611.0	Mm.544	NM_011063	ENSMUSG00000013698	Pea15a	Mat1|PEA-15|Pea15|Pkcs15	phosphoprotein enriched in astrocytes 15A	protein-coding	2.79366177590917	3.36072240916389	3.14747613408888	3.74523561698472	3.01810295592439	3.65192784404522	3.87418925940963	3.26456603400664	0.288784566863994	0.617725862206149	0.977517868708383
Merged-chr11-68458322-4	chr11	68458401	68458601	+	999.392822	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177320, intron 1 of 18)	intron (NM_177320, intron 1 of 18)	26376.0	NM_177320	320207.0	Mm.244960	NM_177320	ENSMUSG00000020901	Pik3r5	AV230647|F730038I15Rik|Foap2|p101	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-102689865-4	chr13	102689749	102689949	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3698.0	NM_001360519	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117258073-4	chr8	117257977	117258177	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	(T)n|Simple_repeat|Simple_repeat	1058.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-23246755-4	chr19	23246660	23246860	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252684, intron 8 of 24)	L2|LINE|L2	25839.0	NM_001252685	226026.0	Mm.23267	NM_153808	ENSMUSG00000024943	Smc5	MLZ-453|SMC-5|Smc5l1|mKIAA0594|mSMC5	structural maintenance of chromosomes 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19004883-2	chr7	19004783	19004983	+	854.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_178757, exon 1 of 1)	exon (NM_178757, exon 1 of 1)	818.0	NM_178757	272359.0	Mm.274237	NM_178757	ENSMUSG00000044030	Irf2bp1	6330414O09Rik|C530033F24	interferon regulatory factor 2 binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-95709414-2	chr16	95709314	95709514	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011809, intron 2 of 9)	intron (NM_011809, intron 2 of 9)	7007.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-77539839-3	chr10	77539821	77540021	+	762.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008404, intron 1 of 15)	intron (NM_008404, intron 1 of 15)	9573.0	NM_008404	16414.0	Mm.1137	NM_008404	ENSMUSG00000000290	Itgb2	2E6|AI528527|Cd18|LAD|LCAMB|Lfa1|MF17	integrin beta 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-127501336-2	chr2	127501238	127501438	+	632.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019789, intron 2 of 8)	intron (NM_019789, intron 2 of 8)	-18839.0	NM_001111331	56461.0	Mm.315292	NM_019789	ENSMUSG00000079056	Kcnip3	4933407H12Rik|AI413860|Csen|DREAM|KChIP3|R74849	Kv channel interacting protein 3, calsenilin	protein-coding	1.22403327927499	1.54963490376033	1.63312011017697	1.10769891134027	1.06542782148506	0.925356723249239	1.64760915255084	2.424241184922	0.884453208278271	0.469190801789407	0.924757197727779
Merged-chr2-150897247-4	chr2	150897143	150897343	+	870.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151505, intron 1 of 12)	B1_Mur4|SINE|Alu	7488.0	NM_024465	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-145167112-4	chr5	145166999	145167199	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133735)	promoter-TSS (NM_133735)	5.0	NM_133735	71799.0	Mm.277413	NM_133735	ENSMUSG00000029624	Ptcd1	1110069M14Rik	pentatricopeptide repeat domain 1	protein-coding	5.39993181455886	5.44933658745462	4.36722072814652	5.31147310282799	5.16798912710872	5.27563792169669	5.84985314105256	5.30607438728884	0.262519191265406	0.419671125959614	0.899498409000238
Merged-chr3-108459016-3	chr3	108458864	108459064	+	634.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358064, intron 21 of 21)	intron (NM_001358064, intron 21 of 21)	-13705.0	NM_001204979	20226.0	Mm.28688	NM_011319	ENSMUSG00000068739	Sars	Sars1|Strs|serRS	seryl-aminoacyl-tRNA synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-59785253-2	chr4	59785153	59785353	+	950.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1398.0	NM_001013577	66209.0	Mm.51988	NM_001013577	ENSMUSG00000038544	Inip	1110054O05Rik|2610312O17Rik|AA399876|Ssbip1	INTS3 and NABP interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-116166014-2	chr9	116165914	116166114	+	603.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009371, intron 1 of 7)	intron (NM_009371, intron 1 of 7)	9349.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	-0.885343988398316	-0.873197811915141	-0.879568534556306	-0.464008891048743	-0.884809499207366	-0.870535133016439	-0.878945546113603	-0.458408536970068	0.0285539633070526	0.992673327504828	1
Merged-chr15-66795449-2	chr15	66795349	66795549	+	644.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001029841, intron 2 of 7)	intron (NM_001029841, intron 2 of 7)	36380.0	NM_001029841	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128232187-4	chr10	128232095	128232295	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008600)	TTS (NM_008600)	132.0	NM_001136082	21853.0	Mm.6458	NM_011589	ENSMUSG00000039994	Timeless	C77407|Debt69|tim	timeless circadian clock 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-172501861-4	chr1	172501762	172501962	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178598, intron 1 of 4)	intron (NM_178598, intron 1 of 4)	1616.0	NM_178598	21346.0	Mm.271711	NM_178598	ENSMUSG00000026547	Tagln2	2700094C18Rik|SM22beta|Sm22B|Sm22a	transgelin 2	protein-coding	5.604359594499	5.36350878507957	4.63119952262543	4.6035978630022	5.2537441111608	6.00939125647559	5.1007931884703	4.47621566590336	0.218816175875692	0.566121226153268	0.962163739245057
Merged-chr19-5664605-2	chr19	5664505	5664705	+	613.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164482)	promoter-TSS (NM_001164482)	-898.0	NM_001164480	20469.0	Mm.3072	NM_011379	ENSMUSG00000056917	Sipa1	Spa1	signal-induced proliferation associated gene 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-54921103-4	chr11	54921049	54921249	+	710.116699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271456, intron 12 of 18)	intron (NM_001271456, intron 12 of 18)	18295.0	NM_008161	14778.0	Mm.200916	NM_008161	ENSMUSG00000018339	Gpx3	AA960521|EGPx|GPx|GSHPx-3|GSHPx-P	glutathione peroxidase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-183637142-1	chr1	183637042	183637242	+	566.0	f0_c57.idr	Intergenic	Intergenic	-111835.0	NR_151520	102637191.0	Mm.417076	NR_151520	ENSMUSG00000103305	Gm34068	-	predicted gene, 34068	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-101718196-2	chr12	101718096	101718296	+	960.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001082976, intron 1 of 11)	CpG	327.0	NM_001082976	74413.0	Mm.275939	NM_028924	ENSMUSG00000021187	Tc2n	4933406D09Rik|Mtac2d1|Tac2-N	tandem C2 domains, nuclear	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-10726973-3	chr18	10726872	10727072	+	855.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144860, intron 1 of 20)	intron (NM_144860, intron 1 of 20)	1347.0	NM_144860	225164.0	Mm.21500	NM_144860	ENSMUSG00000024294	Mib1	DIP-1|E430019M12Rik|Mib|mKIAA1323	mindbomb E3 ubiquitin protein ligase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-81044644-2	chr5	81044544	81044744	+	608.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_198702, intron 1 of 27)	L1MA5|LINE|L1	23051.0	NM_198702	319387.0	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	2.81763331185581	3.44731320280667	2.30165246828163	3.1154074877796	2.38497806776301	2.23255738848486	1.4667415397505	2.62237001878664	-1.4635814710781	0.0686582795656861	0.393141284550956
Merged-chr10-116580638-2	chr10	116580538	116580738	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359248)	promoter-TSS (NM_001359248)	-102.0	NM_001359248	72068.0	Mm.351553	NM_028082	ENSMUSG00000020166	Cnot2	2600016M12Rik|2810470K03Rik|AA537049|AA959607|AW557563|C79650	CCR4-NOT transcription complex, subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-149246197-4	chr5	149246080	149246280	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18824.0	NM_001308462	11690.0	Mm.19844	NM_009663	ENSMUSG00000060063	Alox5ap	Flap	arachidonate 5-lipoxygenase activating protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-20207259-4	chr13	20207151	20207351	+	714.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 2 of 21)	intron (NM_080288, intron 2 of 21)	116744.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129490085-4	chr2	129489970	129490170	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177653, intron 1 of 6)	intron (NM_177653, intron 1 of 6)	46532.0	NM_177653	228592.0	Mm.452175	NM_177653	ENSMUSG00000043727	F830045P16Rik	Sirpb3	RIKEN cDNA F830045P16 gene	protein-coding	3.538029704506	3.72355110961344	3.18604513280932	4.3883443493436	4.29727112822736	3.44912122258765	3.7909694776132	4.7106412157161	0.510624254867175	0.320906552944639	0.823346905075712
Merged-chr2-178059010-2	chr2	178058910	178059110	+	598.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19415.0	NM_001162922	353208.0	Mm.381194	NM_001162922	ENSMUSG00000078861	Zfp931	2810021G02Rik	zinc finger protein 931	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-60811628-4	chr19	60811548	60811748	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347464)	promoter-TSS (NM_001347464)	93.0	NM_001347464	67894.0	Mm.26148	NM_026437	ENSMUSG00000024993	Fam45a	1810055E12Rik	family with sequence similarity 45, member A	protein-coding	4.11558764570007	4.48710815815672	5.7227972189724	3.72784507872909	4.47965797708975	4.93011080109323	5.02157537987859	4.88501434428408	0.123193023656551	0.78358672049899	0.998431161219273
Merged-chr4-132960929-2	chr4	132960829	132961029	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13166.0	NM_010208	14191.0	Mm.271665	NM_010208	ENSMUSG00000028874	Fgr	-	FGR proto-oncogene, Src family tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-11006230-4	chr16	11006131	11006331	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2667.0	NR_040518	100043147.0	Mm.489001	NR_040518	ENSMUSG00000097056	Gm4262	-	predicted gene 4262	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-126114203-4	chr4	126114110	126114310	+	851.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028800, intron 1 of 10)	intron (NM_028800, intron 1 of 10)	10253.0	NM_001145827	74178.0	Mm.440269	NM_028800	ENSMUSG00000042608	Stk40	2310004N11Rik|AI428792	serine/threonine kinase 40	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-88244499-4	chr8	88244400	88244600	+	775.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164499, intron 3 of 11)	intron (NM_001164499, intron 3 of 11)	-27903.0	NM_007406	11513.0	Mm.288206	NM_007406	ENSMUSG00000031659	Adcy7	AA407758	adenylate cyclase 7	protein-coding	3.2966293792986	1.43866319378569	2.92512804737435	2.55848025093951	3.17245625030557	1.4482159263735	2.4124468467899	2.33441161620289	-0.440782754995012	0.635568873315215	0.982417279970648
Merged-chr19-7335913-2	chr19	7335826	7336026	+	846.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080388, intron 1 of 16)	intron (NM_001080388, intron 1 of 16)	5934.0	NM_001080389	13728.0	Mm.258986	NM_007928	ENSMUSG00000024969	Mark2	EMK-1|Emk|Par-1|Par-1b	MAP/microtubule affinity regulating kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-70621526-4	chr4	70621407	70621607	+	854.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-86579.0	NM_172694	230316.0	Mm.251188	NM_172694	ENSMUSG00000039270	Megf9	4933405H16Rik|9630025C07|Egfl5|mKIAA0818	multiple EGF-like-domains 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-112657738-1	chr4	112657638	112657838	+	572.0	f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	43998.0	NM_001285963	329919.0	Mm.259806	NM_177865	ENSMUSG00000034359	Skint2	A430070M19|B7S3|Skint-2	selection and upkeep of intraepithelial T cells 2	protein-coding	-0.953721354153451	-1.41025554057125	-1.42001056191158	-1.42802362688808	-1.44024889148474	-1.40814158675276	-1.41780223890411	-1.42658929208844	-2.11310844444413	0.543369238581748	1
Merged-chr5-120534915-2	chr5	120534815	120535015	+	718.166626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_133221)	TTS (NM_133221)	23723.0	NM_001177594	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-88276416-3	chr1	88276338	88276538	+	810.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172505, intron 2 of 4)	intron (NM_172505, intron 2 of 4)	1119.0	NM_172505	212427.0	Mm.384762	NM_172505		A730008H23Rik	Fleg1	RIKEN cDNA A730008H23 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-39778292-4	chr15	39778187	39778387	+	948.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022722, intron 9 of 9)	intron (NM_022722, intron 9 of 9)	-18758.0	NR_045788	100503072.0	Mm.446661	NR_045788	ENSMUSG00000087695	Gm16291	-	predicted gene 16291	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-140976941-2	chr7	140976841	140977041	+	839.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4|LINE|L1	8865.0	NM_001360728	68713.0	Mm.175661	NM_026820	ENSMUSG00000025491	Ifitm1	1110036C17Rik|DSPA2a|Mil-2|Mil2	interferon induced transmembrane protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3955266-3	chr19	3955164	3955364	+	729.8222049999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3544.0	NM_028545	73458.0	Mm.482922	NM_028545	ENSMUSG00000037263	Aldh3b3	1700055N04Rik	aldehyde dehydrogenase 3 family, member B3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25218472-2	chr7	25218372	25218572	+	572.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_106015)	promoter-TSS (NR_106015)	-747.0	NR_106015	102466794.0		NR_106015	ENSMUSG00000098325	Mir7048	Gm27274|mmu-mir-7048	microRNA 7048	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-63215962-3	chr4	63215845	63216045	+	855.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025685, intron 1 of 60)	CpG-9975	533.0	NM_025685	373864.0	Mm.194116	NM_025685	ENSMUSG00000045672	Col27a1	5730512J02Rik|AI449266	collagen, type XXVII, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-120453383-4	chr6	120453290	120453490	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9807.0	NM_008359	16172.0	Mm.4481	NM_008359	ENSMUSG00000002897	Il17ra	AW538159|Cdw217|Il17r|VDw217	interleukin 17 receptor A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-136340420-2	chr7	136340320	136340520	+	772.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_040459, intron 4 of 4)	intron (NR_040459, intron 4 of 4)	8995.0	NR_040459	330664.0	Mm.127762	NR_040459	ENSMUSG00000109633	C230079O03Rik	C230079O03	RIKEN cDNA C230079O03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-147075764-1	chr5	147075664	147075864	+	765.0	f1_balb.idr	intron (NM_080795, intron 1 of 9)	PB1D9|SINE|Alu	808.0	NM_080795	140887.0	Mm.272203	NM_080795	ENSMUSG00000016520	Lnx2	9630046H24|AW209022	ligand of numb-protein X 2	protein-coding	1.3297908917483	0.636424515633377	0.625098321386016	1.3268190092649	1.56946929567722	1.19999486166569	0.627607927668991	0.617815388089842	0.20013377971398	0.903519110558251	0.998431161219273
Merged-chr13-47230524-4	chr13	47230395	47230595	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146042, intron 4 of 7)	intron (NM_146042, intron 4 of 7)	36492.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	1.73951953748415	1.50099757269042	0.781365958427229	1.60369391017909	1.08266457103921	0.798360905718715	0.784452854920418	1.40360583000893	-1.64141390225551	0.251420035960025	0.749639150195771
Merged-chr11-119087498-4	chr11	119087406	119087606	+	883.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1269.0	NM_007625	12418.0	Mm.268070	NM_007625	ENSMUSG00000039989	Cbx4	MPc2|PC2	chromobox 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-38433920-3	chr2	38433820	38434020	+	837.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-77777.0	NM_021606	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118776762-2	chr9	118776662	118776862	+	877.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 2 of 13)	ORR1C2|LTR|ERVL-MaLR	65070.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-37496199-4	chr1	37496098	37496298	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290801, intron 2 of 14)	intron (NM_001290801, intron 2 of 14)	-7593.0	NR_024017	77633.0	Mm.483177	NR_024017	ENSMUSG00000103948	4930594C11Rik	-	G1 to S phase transition pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-74808314-1	chr13	74808214	74808414	+	1000.0	f1_balb.idr	promoter-TSS (NM_009817)	promoter-TSS (NM_009817)	-354.0	NM_009817	12380.0	Mm.29163	NM_009817	ENSMUSG00000021585	Cast	-	calpastatin	protein-coding	3.57519736365894	2.55234301504127	2.10551176280958	3.54683052959936	2.41947805556799	2.72360343898417	3.08609273293955	3.24011476487678	-0.353579593349124	0.622047686791392	0.979537295922371
Merged-chr8-56328399-4	chr8	56328301	56328501	+	965.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33849.0	NM_008278	15446.0	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	4.44230762174419	5.13563193242681	3.85367281280489	3.95845553169839	3.72012167426822	3.93510517419996	4.55127845496425	4.46907947059314	-0.301513014985362	0.509733364516006	0.944765330710047
Merged-chr5-115272070-3	chr5	115271874	115272074	+	865.1333619999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302449, intron 1 of 16)	MIRc|SINE|MIR	921.0	NM_001302448	50849.0	Mm.30051	NM_016698	ENSMUSG00000041740	Rnf10	AA675014|RIE2|mKIAA0262	ring finger protein 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-78486983-2	chr10	78486883	78487083	+	704.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22035.0	NM_172134	216134.0	Mm.206159	NM_172134	ENSMUSG00000032788	Pdxk	2310036D04Rik|AA119688|C77999	pyridoxal (pyridoxine, vitamin B6) kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10863699-2	chr19	10863599	10863799	+	842.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133804, intron 5 of 10)	intron (NM_133804, intron 5 of 10)	6080.0	NM_133804	98170.0	Mm.490254	NM_133804	ENSMUSG00000024736	Tmem132a	6720481D13Rik|Hspa5bp1|Orai1|R74613	transmembrane protein 132A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-17795335-1	chr13	17795235	17795435	+	676.0	f0_balb.idr	intron (NM_027118, intron 1 of 13)	intron (NM_027118, intron 1 of 13)	9762.0	NM_001081058	69562.0	Mm.193924	NM_027118	ENSMUSG00000041297	Cdk13	2310015O17Rik|Cdc2l5	cyclin-dependent kinase 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-79853624-2	chr1	79853524	79853724	+	748.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_009255, intron 1 of 8)	B4|SINE|B4	5041.0	NM_009255	20720.0	Mm.3093	NM_009255	ENSMUSG00000026249	Serpine2	B230326M24Rik|PAI-1|PI-7|PI7|PN-1|Spi4	serine (or cysteine) peptidase inhibitor, clade E, member 2	protein-coding	-0.804163207677509	-0.794983101399937	-0.797999606688127	-0.274812235520353	-0.427050854416988	-0.792783235177023	-0.797335026103832	-0.799915875049286	-0.599433640647898	0.843645376656349	1
Merged-chr3-51375491-1	chr3	51375391	51375591	+	541.0	f1_balb.idr	Intergenic	B3|SINE|B2	21056.0	NR_028121	67749.0	Mm.273339	NM_026358	ENSMUSG00000037161	Mgarp	4930583H14Rik|AI195347|CESP-1|HUMMR|Osap|Qsap	mitochondria localized glutamic acid rich protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-73054061-4	chr12	73053986	73054186	+	979.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-7374.0	NM_009189	20471.0	Mm.4645	NM_009189	ENSMUSG00000051367	Six1	BB138287	sine oculis-related homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-117002789-2	chr4	117002689	117002889	+	635.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_175244, exon 18 of 21)	exon (NM_175244, exon 18 of 21)	7441.0	NM_175244	76608.0	Mm.251420	NM_175244	ENSMUSG00000046861	Hectd3	1700064K09Rik|AI467540|AW743312	HECT domain E3 ubiquitin protein ligase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85381819-4	chr12	85381715	85381915	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-7098.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-74238331-4	chr1	74238226	74238426	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357387, intron 2 of 10)	intron (NM_001357387, intron 2 of 10)	1809.0	NM_029711	76709.0	Mm.337038	NM_029711	ENSMUSG00000006304	Arpc2	2210023N03Rik|34kDa|p34-Arc	actin related protein 2/3 complex, subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26243768-4	chr17	26243651	26243851	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001206335, intron 1 of 12)	intron (NM_001206335, intron 1 of 12)	491.0	NM_207217	106581.0	Mm.28844	NM_207217	ENSMUSG00000024187	Fam234a	Itfg3	family with sequence similarity 234, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-56258583-4	chr9	56258453	56258653	+	817.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172924, exon 4 of 7)	exon (NM_172924, exon 4 of 7)	-97483.0	NM_019793	56434.0	Mm.28484	NM_019793	ENSMUSG00000032324	Tspan3	1700055K04Rik|TM4-A|Tm4sf8	tetraspanin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35261927-2	chr17	35261874	35262074	+	787.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1120.0	NM_010380	14964.0	Mm.439675	NM_010380	ENSMUSG00000073411	H2-D1	H-2D|H2-D	histocompatibility 2, D region locus 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65718366-4	chr9	65718254	65718454	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172536, intron 3 of 9)	intron (NM_172536, intron 3 of 9)	41806.0	NM_001301307	18247.0	Mm.116749	NM_010952	ENSMUSG00000040652	Oaz2	AZ-2|AZ2|Oaz2-ps|Sez15	ornithine decarboxylase antizyme 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30445537-4	chr7	30445481	30445681	+	893.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007467)	promoter-TSS (NM_007467)	1.0	NM_007467	11803.0	Mm.2381	NM_007467	ENSMUSG00000006651	Aplp1	-	amyloid beta (A4) precursor-like protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-32744786-4	chr5	32744680	32744880	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347332, intron 2 of 8)	intron (NM_001347332, intron 2 of 8)	1562.0	NM_001347332	320951.0	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-50259823-3	chr11	50259725	50259925	+	770.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175334, intron 4 of 4)	intron (NM_175334, intron 4 of 4)	-21293.0	NR_132733	17001.0	Mm.245151	NM_008521	ENSMUSG00000020377	Ltc4s	-	leukotriene C4 synthase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-28541451-2	chr2	28541351	28541551	+	628.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145836, intron 2 of 17)	MTC|LTR|ERVL-MaLR	7987.0	NM_001145836	19730.0	Mm.5236	NM_009058	ENSMUSG00000026821	Ralgds	Gnds|Rgds|mKIAA1308	ral guanine nucleotide dissociation stimulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116464052-4	chr11	116463962	116464162	+	870.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-9715.0	NM_001033267	217341.0	Mm.387352	NM_001033267	ENSMUSG00000070331	Qrich2	Gm66	glutamine rich 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46163668-4	chr8	46163560	46163760	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357215)	promoter-TSS (NM_001357215)	9.0	NM_025747	66756.0	Mm.133623	NM_025747	ENSMUSG00000031631	Cfap97	1110068E21Rik|4933411K20Rik|AW049273|Kiaa1430	cilia and flagella associated protein 97	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-88302675-2	chr1	88302575	88302775	+	589.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-4037.0	NM_134252	171382.0	Mm.218753	NM_134252	ENSMUSG00000036251	Trpm8	CMR1|LTRPC6|LTrpC-6|TRPP8|Trp-p8	transient receptor potential cation channel, subfamily M, member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98777028-4	chr11	98776919	98777119	+	810.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1642.0	NM_145434	217166.0	Mm.390397	NM_145434	ENSMUSG00000020889	Nr1d1	A530070C09Rik|R75201	nuclear receptor subfamily 1, group D, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-57341757-4	chr17	57341662	57341862	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16924.0	NM_001355723	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-75087360-2	chr8	75087260	75087460	+	677.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6258.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27745016-3	chr2	27744918	27745118	+	972.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290481, intron 4 of 9)	intron (NM_001290481, intron 4 of 9)	34435.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-117251964-4	chr4	117251906	117252106	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285812)	promoter-TSS (NM_001285812)	55.0	NM_001285815	68777.0	Mm.331805	NM_026837	ENSMUSG00000048772	Tmem53	1110038M16Rik|1500001P22Rik|1700012A05Rik	transmembrane protein 53	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-51207193-2	chr3	51207093	51207293	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17254.0	NM_009834	12457.0	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71624849-2	chr8	71624750	71624950	+	835.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_146211)	TTS (NM_146211)	6256.0	NR_106035	102466799.0		NR_106035	ENSMUSG00000098976	Mir6769b	Gm27546|mmu-mir-6769b	microRNA 6769b	ncRNA	-0.593971782808924	-0.229906841943083	-0.860943262579957	-0.863380900560312	-0.866824728787484	-0.852294731670505	-0.860246335031522	-0.862955084542922	-3.08409683035983	0.297545618168977	1
Merged-chr2-145675396-3	chr2	145675391	145675591	+	714.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25704.0	NR_033220	408057.0	Mm.486711	NR_033220	ENSMUSG00000087594	BC039771	-	cDNA sequence BC039771	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-62283590-4	chr4	62283463	62283663	+	950.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2866.0	NM_025286	20530.0	Mm.292539	NM_025286	ENSMUSG00000066152	Slc31a2	AI604396|CTR2	solute carrier family 31, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-90366556-4	chr5	90366463	90366663	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030886)	promoter-TSS (NM_030886)	-378.0	NM_198010	81702.0	Mm.245522	NM_030886	ENSMUSG00000055204	Ankrd17	4933425K22Rik|A130069E23Rik|A930008M01|AA407558|AA516750|AU040470|Foe|Gtar|Mask|mKIAA0697	ankyrin repeat domain 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80182622-2	chr7	80182522	80182722	+	770.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4219.0	NM_013659	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-110798157-2	chr7	110798057	110798257	+	632.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009667, intron 6 of 14)	intron (NM_009667, intron 6 of 14)	25553.0	NM_009667	11717.0	Mm.3238	NM_009667	ENSMUSG00000005686	Ampd3	-	adenosine monophosphate deaminase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-95867295-3	chr4	95867183	95867383	+	882.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113412, intron 14 of 15)	MIRb|SINE|MIR	99752.0	NR_045777	319247.0	Mm.473527	NM_175680	ENSMUSG00000044125	9530080O11Rik	-	RIKEN cDNA 9530080O11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-38297466-4	chr18	38297355	38297555	+	975.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164621, intron 1 of 9)	MIR|SINE|MIR	650.0	NM_001164621	56736.0	Mm.228903	NM_020012	ENSMUSG00000060450	Rnf14	2310075C09Rik|2610005D23Rik|AA986456|AU041447|D18Ertd188e|D7Bwg0165e|Triad2	ring finger protein 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-54423534-3	chr14	54423452	54423652	+	687.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-3357.0	NM_026851	68836.0	Mm.248163	NM_026851	ENSMUSG00000010406	Mrpl52	1110047B07Rik	mitochondrial ribosomal protein L52	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-24801277-5	chr13	24801239	24801439	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024473)	promoter-TSS (NM_024473)	-318.0	NM_024473	79555.0	Mm.266668	NM_024473	ENSMUSG00000019132	BC005537	8030460C05Rik|C78201	cDNA sequence BC005537	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-72239979-5	chr8	72239828	72240028	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007456)	promoter-TSS (NM_007456)	-90.0	NM_007456	11767.0	Mm.290086	NM_007456	ENSMUSG00000003033	Ap1m1	AA408894|AP47|Adtm1A|Cltnm|mu1A	adaptor-related protein complex AP-1, mu subunit 1	protein-coding	7.60507343627986	6.97531905669307	7.23908548891141	7.66756209734724	7.64061190034793	7.09844251787772	6.27799325609159	7.49714503500233	-0.187416053190111	0.430582424059899	0.904223090525788
Merged-chr14-56875937-6	chr14	56875816	56876016	+	913.0277710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6C|LTR|ERVK	-10687.0	NM_177627	76007.0	Mm.31417	NM_029498	ENSMUSG00000021945	Zmym2	5830413P05Rik|FIM|MYM|RAMP|SCLL|Zfp198|Znf198	zinc finger, MYM-type 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-12809026-2	chr13	12808926	12809126	+	793.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR23|LTR|ERV1	-8947.0	NM_011118	18812.0	Mm.457984	NM_011118	ENSMUSG00000056457	Prl2c3	Ghd1|MRP-2|MRP-3|Mrpplf3|PLF-2|PLF-3|Plf2|Prl2c4|mrp/plf3	prolactin family 2, subfamily c, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26690548-2	chr17	26690448	26690648	+	668.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025272, intron 2 of 3)	intron (NM_025272, intron 2 of 3)	14152.0	NM_025272	11974.0	Mm.22602	NM_025272	ENSMUSG00000015575	Atp6v0e	Atp6k|Atp6v0e1|M9.2	ATPase, H+ transporting, lysosomal V0 subunit E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128749766-2	chr10	128749666	128749866	+	583.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001170869, intron 1 of 2)	intron (NM_001170869, intron 1 of 2)	1311.0	NM_001253704	78428.0	Mm.27358	NM_030100	ENSMUSG00000064030	Pym1	A030010B05Rik|Pym|Wibg	PYM homolog 1, exon junction complex associated factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-16111406-3	chr2	16111323	16111523	+	580.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310455, intron 32 of 38)	RLTR26_Mus|LTR|ERVK	-244881.0	NM_026162	67448.0	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-27195370-4	chr3	27195295	27195495	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 1 of 4)	RMER1A|Other|Other	12391.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-34507359-2	chr19	34507259	34507459	+	676.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111100, intron 5 of 9)	intron (NM_001111100, intron 5 of 9)	20115.0	NM_001111100	16889.0	Mm.157545	NM_021460	ENSMUSG00000024781	Lipa	AA960673|Lal|Lip-1|Lip1	lysosomal acid lipase A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-155670384-2	chr4	155670284	155670484	+	665.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR9D|LTR|ERVK	-1130.0	NM_001256107	76580.0	Mm.235738	NM_145124	ENSMUSG00000029060	Mib2	2210008I11Rik|Zzank1|skd	mindbomb E3 ubiquitin protein ligase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119079269-4	chr11	119079170	119079370	+	778.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007625, exon 5 of 5)	3' UTR (NM_007625, exon 5 of 5)	6967.0	NM_007625	12418.0	Mm.268070	NM_007625	ENSMUSG00000039989	Cbx4	MPc2|PC2	chromobox 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-79842609-1	chr11	79842509	79842709	+	744.0	f1_c57bl6.idr	Intergenic	Intergenic	116209.0	NR_029959	723853.0		NR_029959	ENSMUSG00000065489	Mir365-2	Mirn365-2|mir-365-2	microRNA 365-2	ncRNA	1.90204757646579	1.58047857615672	2.16662882828286	0.930363717339743	1.27030760155229	0.96920984095667	1.18325241237316	1.94117885489619	-1.0078436734311	0.422214070130766	0.900322118218157
Merged-chr10-19942106-4	chr10	19942024	19942224	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008580, intron 1 of 29)	intron (NM_008580, intron 1 of 29)	7598.0	NM_008580	26408.0	Mm.6595	NM_008580	ENSMUSG00000071369	Map3k5	7420452D20Rik|ASK|ASK1|MAPKKK5|Mekk5	mitogen-activated protein kinase kinase kinase 5	protein-coding	-0.0624653033885039	-0.304508434702232	-0.308478489507562	-0.311531670009396	0.0497472616437045	-0.303611540440673	-0.30760410148406	0.299837853172181	2.00772901393541	0.4232211792209	1
Merged-chr7-120201587-4	chr7	120201494	120201694	+	823.849976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016669, intron 1 of 7)	intron (NM_016669, intron 1 of 7)	394.0	NM_016669	12971.0	Mm.9114	NM_016669	ENSMUSG00000030905	Crym	-	crystallin, mu	protein-coding	2.55186363867453	2.85471071362462	2.39228548727248	3.03471011320488	2.46961536784874	2.8751614329847	2.41040945292521	3.04964445538183	-0.00691843900389449	0.992266035834497	0.998431161219273
Merged-chr7-101584491-3	chr7	101584387	101584587	+	872.4111330000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3326.0	NM_019915	11872.0	Mm.57008	NM_019915	ENSMUSG00000030651	Art2b	ART2.2|ARTC2|Art|Ly92b|Rt-6|Rt6|Rt6-2	ADP-ribosyltransferase 2b	protein-coding	0.0368332948512129	-0.0968842117200274	-0.102503080552439	-0.10685128725511	0.48276494503628	-0.0956201910212141	-0.101262180681772	0.73134731077894	3.19306180890893	0.161044711215126	1
Merged-chr1-165237023-4	chr1	165236922	165237122	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145513)	promoter-TSS (NM_145513)	-62.0	NM_001357410	226591.0	Mm.21520	NM_145513	ENSMUSG00000040843	Tiprl	1810011K17Rik	TIP41, TOR signalling pathway regulator-like (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-50374873-3	chr6	50374755	50374955	+	600.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163645, intron 2 of 21)	intron (NM_001163645, intron 2 of 21)	7982.0	NM_027881	71720.0	Mm.44153	NM_027881	ENSMUSG00000029822	Osbpl3	1200014M06Rik|6720421I08Rik|A530055M08|ORP-3|ORP3|OSBP3	oxysterol binding protein-like 3	protein-coding	2.28745273249474	2.10928725598195	2.57297588180292	2.49903990537406	1.60785372244673	2.3837105610154	1.73183216332777	1.25165464073791	-1.4453934152953	0.132801388059381	0.570412071814959
Merged-chr11-101465165-4	chr11	101465064	101465264	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012037, intron 1 of 5)	intron (NM_012037, intron 1 of 5)	1035.0	NM_012037	26949.0	Mm.29210	NM_012037	ENSMUSG00000034993	Vat1	VAT-1	vesicle amine transport 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-154093501-2	chr4	154093401	154093601	+	644.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_011642, intron 3 of 13)	intron (NM_011642, intron 3 of 13)	3672.0	NM_001126330	22062.0	Mm.78015	NM_011642	ENSMUSG00000029026	Trp73	TAp73|Tp73|deltaNp73|p73	transformation related protein 73	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-8306709-6	chr12	8306666	8306866	+	681.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4812.0	NM_013527	238057.0	Mm.271308	NM_013527	ENSMUSG00000037660	Gdf7	BMP12	growth differentiation factor 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123994727-2	chr5	123994627	123994827	+	755.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_145070, exon 8 of 32)	exon (NM_145070, exon 8 of 32)	-2125.0	NR_105999	102465625.0		NR_105999	ENSMUSG00000098454	Mir7032	Gm27309|mmu-mir-7032	microRNA 7032	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-58687838-4	chr13	58687709	58687909	+	959.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	74502.0	NR_045469	67585.0	Mm.84751	NR_045469	ENSMUSG00000114384	4930455J16Rik	-	RIKEN cDNA 4930455J16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6910111-4	chr19	6910001	6910201	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358444)	promoter-TSS (NM_001358444)	5.0	NM_012021	54683.0	Mm.279782	NM_012021	ENSMUSG00000024953	Prdx5	AOEB166|AOPP|PLP|Pmp20|Prdx6|PrxV	peroxiredoxin 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-17834904-2	chr3	17834800	17835000	+	579.5	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	39238.0	NR_029814	723950.0		NR_029814	ENSMUSG00000093073	Mir124a-2	Mirn124a-2|mir-124-2|mir-124a-2	microRNA 124a-2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-37964482-2	chr18	37964382	37964582	+	546.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175684, intron 11 of 19)	MIR|SINE|MIR	5249.0	NM_175684	319262.0	Mm.285060	NM_175684	ENSMUSG00000038524	Fchsd1	A030002D08Rik	FCH and double SH3 domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-122595847-4	chr6	122595755	122595955	+	939.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031159, intron 3 of 7)	intron (NM_031159, intron 3 of 7)	6589.0	NM_031159	11810.0	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	3.63673634304982	3.35400504935751	3.05977593068364	3.56068295786324	3.29135128404782	1.60987384404785	3.08451047814044	1.50013888954415	-1.32463574082132	0.0924118088321645	0.470077818980346
Merged-chr3-37342513-3	chr3	37342442	37342642	+	706.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6111.0	NM_008006	14173.0	Mm.473689	NM_008006	ENSMUSG00000037225	Fgf2	Fgf-2|Fgfb|bFGF	fibroblast growth factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-83546508-4	chr9	83546406	83546606	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1832.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-8098245-4	chr14	8098168	8098368	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178279)	promoter-TSS (NM_178279)	57.0	NM_001360315	218699.0	Mm.29515	NM_145458	ENSMUSG00000033885	Pxk	C230080L11Rik|D14Ertd813e|Monaka|Slob	PX domain containing serine/threonine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-133033977-7	chr1	133033788	133033988	+	944.7698359999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3301.0	NM_001302802	17248.0	Mm.426531	NM_008575	ENSMUSG00000054387	Mdm4	4933417N07Rik|AA414968|AL023055|AU018793|AU021806|C85810|Mdmx	transformed mouse 3T3 cell double minute 4	protein-coding	4.63995302311736	4.8967975199677	4.28552300829197	5.17977467710839	4.56310735467655	5.0138374089447	4.49139586126625	4.36012518033841	-0.205069050493352	0.579648548522462	0.965985075107763
Merged-chr13-60602585-4	chr13	60602452	60602652	+	931.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001285917, exon 2 of 27)	exon (NM_001285917, exon 2 of 27)	341.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	2.13848983692532	1.33832623234833	1.55383817648593	2.14181393455713	2.34224586570776	2.72125232598193	2.22136689791668	2.4619949610925	1.4793028127778	0.111313069356052	0.521828942224762
Merged-chr19-45311118-4	chr19	45311004	45311204	+	811.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52630.0	NM_001360122	12234.0	Mm.119717	NM_009771	ENSMUSG00000025217	Btrc	Beta-Trcp1|E3RS-IkappaB|E3RSIkappaB|FWD1|Fbw1a|HOS|SCF b-TRCP|Slimb|b-TrCP|beta-TrCP	beta-transducin repeat containing protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-6519207-2	chr11	6519138	6519338	+	877.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_178440, intron 1 of 21)	intron (NM_178440, intron 1 of 21)	1720.0	NM_178440	246177.0	Mm.239554	NM_178440	ENSMUSG00000020437	Myo1g	E430002D17Rik	myosin IG	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69008453-4	chr11	69008319	69008519	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159519)	promoter-TSS (NM_001159519)	41.0	NM_001159519	237823.0	Mm.340288	NM_001159519	ENSMUSG00000020899	Pfas	4432409B16Rik|FGAMS|FGAR-AT|FGARAT|Gm18|PURL|Sofa	phosphoribosylformylglycinamidine synthase (FGAR amidotransferase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114989948-4	chr11	114989840	114990040	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145437)	promoter-TSS (NM_145437)	-54.0	NM_145437	217305.0	Mm.275986	NM_145437	ENSMUSG00000034641	Cd300ld	4732429D16Rik|CLM5|Cd300ld1|LMIR4|MAIR-IV|clm-5	CD300 molecule like family member d	protein-coding	4.58574569092062	4.42295147323582	3.90732186095175	4.17234656149834	4.15132672059755	3.99244504969236	3.69575808551147	4.24545969695435	-0.347469155899455	0.414893286645294	0.896676881011847
Merged-chr10-125500496-1	chr10	125500396	125500596	+	593.333313	f1_c57bl6.idr	Intergenic	Intergenic	-171533.0	NM_001358496	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	0.0385712615886536	0.487198875574829	0.0467824924202389	0.419260862837253	0.03932573707608	0.0517732769192075	0.64056091831902	0.0442151128993742	-0.244471748347065	0.91376022640537	1
Merged-chr2-124928097-4	chr2	124928008	124928208	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-140019.0	NM_175034	317750.0	Mm.330538	NM_175034	ENSMUSG00000035183	Slc24a5	F630045L20Rik|JSX|NCKX5|NCX5|Oca6	solute carrier family 24, member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-137478449-4	chr7	137478353	137478553	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40779.0	NR_033611	620016.0	Mm.388932	NR_033611	ENSMUSG00000100863	Gm12669	-	glutaredoxin 3 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-170217710-4	chr2	170217616	170217816	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-75041.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-121279854-2	chr14	121279754	121279954	+	923.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_134082, exon 25 of 27)	exon (NM_134082, exon 25 of 27)	31148.0	NR_155502	320268.0	Mm.435974	NR_155502		B930095G15Rik	-	RIKEN cDNA B930095G15 gene	ncRNA	-1.58994551673671	-1.55912852307891	-1.56844783632235	-1.57610299769523	-1.18549093183599	-1.55710898902261	-1.56633814807757	-1.57473272746952	1.78703309985663	0.610309988231842	1
Merged-chr15-93272763-2	chr15	93272663	93272863	+	677.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346785, intron 1 of 7)	intron (NM_001346785, intron 1 of 7)	2416.0	NM_001357006	223827.0	Mm.22819	NM_001033275	ENSMUSG00000036197	Gxylt1	Glt8d3|Gm1228|Gm87	glucoside xylosyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-62686109-2	chr2	62686009	62686209	+	720.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_145523, intron 4 of 7)	intron (NM_145523, intron 4 of 7)	21782.0	NM_145523	227960.0	Mm.219877	NM_145523	ENSMUSG00000026893	Gca	5133401E04Rik|AI573844	grancalcin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-33921200-3	chr5	33921170	33921370	+	805.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011914, intron 2 of 10)	intron (NM_011914, intron 2 of 10)	14988.0	NM_011914	24116.0	Mm.332320	NM_011914	ENSMUSG00000029111	Nelfa	Whsc2|Whsc2h	negative elongation factor complex member A, Whsc2	protein-coding	0.227909946841308	-0.107571355134863	-0.111844051777977	0.281300153883455	-0.119739252339745	0.362082244022681	-0.110903603756637	0.0398897395578831	-0.229391317748532	0.91748026171648	1
Merged-chr7-99050096-4	chr7	99049964	99050164	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 6 of 14)	intron (NM_178635, intron 6 of 14)	91080.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-38509014-4	chr5	38508921	38509121	+	964.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6B|LTR|ERVK	-6869.0	NM_145559	117591.0	Mm.260137	NM_145559	ENSMUSG00000005107	Slc2a9	Glut9|SLC2A9B|SLC2a9A	solute carrier family 2 (facilitated glucose transporter), member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-107105741-2	chr13	107105635	107105835	+	789.56665	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB2|LINE|L1	83165.0	NR_015471	100040322.0	Mm.133867	NR_015471	ENSMUSG00000071181	3830408C21Rik	-	RIKEN cDNA 3830408C21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-36473667-2	chr16	36473567	36473767	+	767.8000490000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-18275.0	NM_025288	20863.0	Mm.136573	NM_025288	ENSMUSG00000054905	Stfa3	Stf3	stefin A3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-121448405-4	chr2	121448298	121448498	+	767.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011354)	promoter-TSS (NM_011354)	-800.0	NM_011354	378702.0	Mm.262252	NM_011354	ENSMUSG00000074884	Serf2	C80083|Msmac1l|m4F5rel	small EDRK-rich factor 2	protein-coding	1.66214263805868	1.99147154129688	0.913943527289071	0.900836179796062	1.76457355600919	1.36598801754789	1.13889008824678	1.5564906047945	0.0299207595250502	0.981534568818882	0.998431161219273
Merged-chr1-171611618-1	chr1	171611518	171611718	+	896.0	f1_c57bl6.idr	Intergenic	Lx|LINE|L1	-4208.0	NM_001277968	17085.0	Mm.560	NM_008534	ENSMUSG00000004707	Ly9	AI893573|CD229|Lgp100|Ly-9|SLAMF3|T100	lymphocyte antigen 9	protein-coding	-0.961808289013217	-0.941143281918953	-0.953353259954851	-0.9565109400711	-0.961015840561242	-0.938024035002784	0.030272756003758	-0.955957512668286	3.38343409954699	0.275427317743097	1
Merged-chr14-70096528-4	chr14	70096368	70096568	+	844.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3625.0	NM_021328	57784.0	Mm.24186	NM_021328	ENSMUSG00000022089	Bin3	1700015F07Rik	bridging integrator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-121473839-4	chr10	121473742	121473942	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138956, intron 1 of 4)	intron (NM_138956, intron 1 of 4)	2408.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83632919-2	chr11	83632819	83633019	+	966.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16459.0	NM_011337	20302.0	Mm.1282	NM_011337	ENSMUSG00000000982	Ccl3	AI323804|G0S19-1|LD78alpha|MIP-1alpha|MIP1-(a)|MIP1-alpha|Mip1a|Scya3	chemokine (C-C motif) ligand 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-94177802-3	chr8	94177683	94177883	+	706.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1306.0	NM_013602	17748.0	Mm.192991	NM_013602	ENSMUSG00000031765	Mt1	MT-I|Mt-1	metallothionein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-91302935-2	chr5	91302835	91303035	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19859.0	NR_040428	100503265.0	Mm.125059	NR_040428	ENSMUSG00000107198	Gm19619	-	predicted gene, 19619	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44125319-2	chr7	44125219	44125419	+	877.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45-int|LTR|ERVK	-11971.0	NM_008454	16615.0	Mm.440887	NM_008454	ENSMUSG00000038968	Klk1b16	Klk16|mGk-16	kallikrein 1-related peptidase b16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-50803639-3	chr15	50803539	50803739	+	943.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310485, intron 5 of 7)	intron (NM_001310485, intron 5 of 7)	85410.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-74497499-3	chr11	74497401	74497601	+	828.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001015046, intron 2 of 24)	intron (NM_001015046, intron 2 of 24)	92657.0	NM_001015046	380711.0	Mm.425690	NM_001015046	ENSMUSG00000038807	Rap1gap2	AU067654|Garnl4|Gm1561|mKIAA1039	RAP1 GTPase activating protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-59293735-1	chr10	59293635	59293835	+	588.5	f1_c57bl6.idr	Intergenic	Intergenic	-29561.0	NM_001316371	18451.0	Mm.2212	NM_011030	ENSMUSG00000019916	P4ha1	AL022634|P4ha	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70373194-6	chr8	70373179	70373379	+	962.763916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016685)	promoter-TSS (NM_016685)	-269.0	NM_016685	12845.0	Mm.45071	NM_016685	ENSMUSG00000031849	Comp	TSP5	cartilage oligomeric matrix protein	protein-coding	-0.0631585014852325	-0.331982470031651	-0.336895676210533	-0.340698492580669	-0.189654531759077	-0.330877361591984	-0.335810523189687	0.582865398933845	2.23479715021387	0.361650870856709	1
Merged-chr6-113245763-4	chr6	113245664	113245864	+	699.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155434, intron 2 of 17)	intron (NR_155434, intron 2 of 17)	7921.0	NR_155433	97287.0	Mm.197816	NM_026849	ENSMUSG00000030269	Mtmr14	1110061O04Rik|AW553738|C76151	myotubularin related protein 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-55510535-4	chr13	55510445	55510645	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114088, intron 2 of 12)	intron (NM_001114088, intron 2 of 12)	-2853.0	NR_105910	102465570.0		NR_105910	ENSMUSG00000099096	Mir6945	Gm27779|mmu-mir-6945	microRNA 6945	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101357024-4	chr7	101356929	101357129	+	994.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040111, intron 1 of 33)	intron (NM_001040111, intron 1 of 33)	8960.0	NM_001040111	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	2.47426364336738	2.768915646777	1.98510931729935	2.87152286793934	2.8940384075672	2.06260881478547	2.69830424169856	2.61733975030262	0.0820671158506966	0.915389352900054	0.998431161219273
Merged-chr10-20349670-4	chr10	20349562	20349762	+	889.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027930, intron 2 of 6)	MTC|LTR|ERVL-MaLR	1843.0	NM_027930	71804.0	Mm.262151	NM_027930	ENSMUSG00000019992	Mtfr2	2610016C23Rik|4933412C16Rik|Dufd1|Fam54a	mitochondrial fission regulator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-180225060-2	chr2	180224960	180225160	+	624.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081171, intron 1 of 78)	CpG	799.0	NM_001081171	16776.0	Mm.4339	NM_001081171	ENSMUSG00000015647	Lama5	AA408760|AA408762|AI853660|[a]5|laminin-511|mKIAA0533	laminin, alpha 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-151219236-2	chr1	151219136	151219336	+	573.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	81202.0	NR_038011	402734.0	Mm.337666	NR_038011		C730036E19Rik	lncLSTR	RIKEN cDNA C730036E19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116443581-2	chr11	116443481	116443681	+	995.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033267, intron 12 of 13)	intron (NM_001033267, intron 12 of 13)	9368.0	NR_003376	664849.0	Mm.258466	NR_003376		Gm7367	EG664849	1110014K08Rik pseudogene	pseudo	-0.755998668505046	-0.746265234757744	-0.1835011411898	-0.751921800996326	-0.374998571242037	-0.745544059796034	-0.748756493287208	-0.75149213951642	-0.730804111338351	0.806793324159422	1
Merged-chr2-52995016-2	chr2	52994916	52995116	+	744.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	137148.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-81658026-4	chr17	81657939	81658139	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 1 of 8)	intron (NR_104580, intron 1 of 8)	80348.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128372409-4	chr2	128372304	128372504	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_028591, exon 2 of 2)	non-coding (NR_028591, exon 2 of 2)	56947.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-149276969-2	chr5	149276869	149277069	+	636.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001308462, intron 2 of 3)	B4A|SINE|B4	11965.0	NM_009663	11690.0	Mm.19844	NM_009663	ENSMUSG00000060063	Alox5ap	Flap	arachidonate 5-lipoxygenase activating protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-54723600-2	chr3	54723500	54723700	+	593.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358017, intron 22 of 24)	intron (NM_001358017, intron 22 of 24)	11764.0	NM_027148	69639.0	Mm.29253	NM_027148	ENSMUSG00000027752	Exosc8	2310032N20Rik|CIP3|mKIAA4013	exosome component 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-13497339-4	chr10	13497242	13497442	+	903.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3686.0	NM_001330198	66848.0	Mm.26625	NM_025799	ENSMUSG00000019810	Fuca2	0610025O11Rik|5530401P20Rik	fucosidase, alpha-L- 2, plasma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-13935875-2	chr10	13935790	13935990	+	1000.0	f0_c57.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	-30185.0	NM_001358783	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	4.68721861498089	5.03017639643154	4.17970971951635	4.38381777939636	2.4508091741401	2.65470376626361	1.54821567996779	1.47433056496332	-3.90066771660222	3.14435556339888e-09	4.45582417909367e-07
Merged-chr11-74381375-2	chr11	74381275	74381475	+	573.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	16704.0	NM_001011851	258153.0	Mm.376124	NM_001011851	ENSMUSG00000058275	Olfr412	MOR127-5P	olfactory receptor 412	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-13369148-2	chr15	13369048	13369248	+	699.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-195473.0	NM_007666	12563.0	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97719337-3	chr11	97719241	97719441	+	617.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054051, intron 9 of 9)	intron (NM_054051, intron 9 of 9)	15907.0	NM_011971	26446.0	Mm.21874	NM_011971	ENSMUSG00000069744	Psmb3	AL033320|C10-II	proteasome (prosome, macropain) subunit, beta type 3	protein-coding	-0.257054338751241	-0.240271595093401	0.567036673122111	0.424730492734695	-0.255998372128191	-0.239043097671672	-0.244530744148955	-0.249235932401447	-3.89399077403233	0.114216932068308	1
Merged-chr2-4651726-2	chr2	4651626	4651826	+	969.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026045, intron 1 of 9)	intron (NM_026045, intron 1 of 9)	409.0	NM_026045	67229.0	Mm.38529	NM_026045	ENSMUSG00000039449	Prpf18	2810441A10Rik	pre-mRNA processing factor 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-6477320-2	chr2	6477220	6477420	+	757.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	124584.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-11175702-4	chr16	11175612	11175812	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027502, intron 1 of 22)	intron (NR_027502, intron 1 of 22)	681.0	NR_027502	106205.0	Mm.226860	NM_145931	ENSMUSG00000037965	Zc3h7a	A430104C18Rik|AI447294|AW556219|HSPC055|Zc3h7|Zc3hdc7	zinc finger CCCH type containing 7 A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-100021835-3	chr12	100021742	100021942	+	844.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164426, intron 2 of 2)	intron (NM_001164426, intron 2 of 2)	57343.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19313613-2	chr7	19313513	19313713	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3568.0	NM_001347586	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-103003069-2	chr14	103002969	103003169	+	637.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045657, intron 2 of 2)	intron (NR_045657, intron 2 of 2)	-20432.0	NM_177715	239217.0	Mm.246466	NM_177715	ENSMUSG00000098557	Kctd12	AU046135|AW538430|Pfet1|Pfetin	potassium channel tetramerisation domain containing 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-62060829-2	chr15	62060729	62060929	+	672.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_132746, intron 1 of 6)	intron (NR_132746, intron 1 of 6)	21572.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132809872-4	chr4	132809725	132809925	+	975.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13461.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-38519099-2	chr2	38518999	38519199	+	826.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159631, intron 1 of 9)	intron (NM_001159631, intron 1 of 9)	7223.0	NM_001159631	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-79691903-2	chr2	79691803	79692003	+	610.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15877.0	NM_172420	75276.0	Mm.257373	NM_172420	ENSMUSG00000034683	Ppp1r1c	4930565M23Rik|4930579P15Rik	protein phosphatase 1, regulatory (inhibitor) subunit 1C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180974580-4	chr1	180974475	180974675	+	920.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_144794, exon 23 of 23)	3' UTR (NM_144794, exon 23 of 23)	32057.0	NM_144794	208795.0	Mm.185518	NM_144794	ENSMUSG00000026519	Tmem63a	BC014795|Tmem64a	transmembrane protein 63a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-37234512-3	chr10	37234449	37234649	+	849.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-95623.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-10786561-4	chr16	10786466	10786666	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1030.0	NM_001271603	12703.0	Mm.130	NM_009896	ENSMUSG00000038037	Socs1	Cish1|Cish7|JAB|SOCS-1|SSI-1	suppressor of cytokine signaling 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-11111758-2	chr19	11111658	11111858	+	750.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_027058, intron 3 of 6)	LTR87|LTR|ERVL?	19120.0	NM_027058	69369.0	Mm.391200	NM_027058	ENSMUSG00000024729	1700017D01Rik	-	RIKEN cDNA 1700017D01 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-122693859-3	chr7	122693746	122693946	+	933.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019430, intron 1 of 3)	intron (NM_019430, intron 1 of 3)	22102.0	NM_019430	54376.0	Mm.444212	NM_019430	ENSMUSG00000066189	Cacng3	-	calcium channel, voltage-dependent, gamma subunit 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-37261288-4	chr10	37261188	37261388	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-122362.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-78344674-9	chr11	78344572	78344772	+	849.351868	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001313988)	promoter-TSS (NM_001313988)	-912.0	NM_001313988	22248.0	Mm.284811	NM_011676	ENSMUSG00000002058	Unc119	D11Bhm52|HRG4|MRG4|Rg4|Rtg4|Unc119h	unc-119 lipid binding chaperone	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-79399468-4	chr8	79399368	79399568	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008539)	promoter-TSS (NM_008539)	0.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75150880-4	chr11	75150797	75150997	+	983.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001002764, intron 15 of 18)	B4A|SINE|B4	17255.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-107333191-4	chr3	107333100	107333300	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001045807)	promoter-TSS (NM_001045807)	89.0	NM_001045807	229700.0	Mm.27966	NM_001045807	ENSMUSG00000048109	Rbm15	C230088J01Rik|mKIAA1438	RNA binding motif protein 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-69702734-4	chr9	69702622	69702822	+	976.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58218.0	NM_022378	64290.0	Mm.440890	NM_022378	ENSMUSG00000059246	Foxb1	C43|Fkh5|Foxb1a|Foxb1b|Hfh-e5.1|Mf3|Twh	forkhead box B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-99298585-4	chr14	99298485	99298685	+	890.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009769)	promoter-TSS (NM_009769)	-106.0	NM_009769	12224.0	Mm.30262	NM_009769	ENSMUSG00000005148	Klf5	4930520J07Rik|Bteb2|CKLF|IKLF	Kruppel-like factor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-58986900-3	chr4	58986796	58986996	+	940.6555789999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025968, intron 1 of 9)	intron (NM_025968, intron 1 of 9)	182.0	NM_025968	67103.0	Mm.34497	NM_025968	ENSMUSG00000028378	Ptgr1	2510002C21Rik|Ltb4dh|Zadh3	prostaglandin reductase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28866982-3	chr7	28866873	28867073	+	784.733337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008496)	TTS (NM_008496)	2587.0	NM_008496	16858.0	Mm.20973	NM_008496	ENSMUSG00000053522	Lgals7	Galectin-7|Pig1	lectin, galactose binding, soluble 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-21623907-1	chr10	21623807	21624007	+	560.0	f0_balb.idr	Intergenic	MTC|LTR|ERVL-MaLR	30762.0	NR_027968	67692.0	Mm.54306	NM_183266	ENSMUSG00000050844	1700020N01Rik	-	RIKEN cDNA 1700020N01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-4254254-2	chr8	4254154	4254354	+	694.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133968, intron 1 of 4)	intron (NM_133968, intron 1 of 4)	1152.0	NM_133968	102209.0	Mm.28452	NM_133968	ENSMUSG00000011837	Snapc2	0610007H10Rik|AU015675	small nuclear RNA activating complex, polypeptide 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-43870595-9	chr5	43870422	43870622	+	886.992615	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007646, intron 1 of 7)	RSINE1|SINE|B4	1713.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	3.53375054812653	3.00262554807636	3.5790536587949	3.27317047055315	2.14804622772918	3.7241048347676	2.51601020184278	2.26703068639276	-0.902571836115091	0.191838586450712	0.670131801310842
Merged-chr7-80030678-2	chr7	80030544	80030744	+	637.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_175433, intron 1 of 4)	intron (NM_175433, intron 1 of 4)	4416.0	NM_175433	209225.0	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-120188440-2	chr6	120188340	120188540	+	605.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016718, intron 1 of 3)	intron (NM_016718, intron 1 of 3)	-5383.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53826459-4	chr4	53826365	53826565	+	949.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028053, intron 1 of 5)	intron (NM_028053, intron 1 of 5)	420.0	NM_028053	52076.0	Mm.27184	NM_028053	ENSMUSG00000028420	Tmem38b	1600017F22Rik|AA437809|AV051057|D4Ertd89e|TRIC-B|mg33b	transmembrane protein 38B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-150010687-2	chr1	150010587	150010787	+	614.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49397.0	NM_008869	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-85037000-4	chr15	85036886	85037086	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133750)	promoter-TSS (NM_133750)	-76.0	NM_001356617	73225.0	Mm.247535	NM_133750	ENSMUSG00000022434	Fam118a	-	family with sequence similarity 118, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-34808210-6	chr8	34808093	34808293	+	877.569458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176933, intron 1 of 3)	CpG-13950	583.0	NM_176933	319520.0	Mm.170276	NM_176933	ENSMUSG00000031530	Dusp4	2700078F24Rik|AI844617|BB104621|E130306H24Rik|MKP2	dual specificity phosphatase 4	protein-coding	2.17646640108911	2.13103907054646	0.729567435141154	1.31209697899132	0.68942140713512	0.754465569272803	1.52294932943538	0.716173685715799	-2.54488333435887	0.0845615628203936	0.446684604073561
Merged-chr16-38091317-2	chr16	38091170	38091370	+	854.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347232, intron 1 of 11)	intron (NM_001347232, intron 1 of 11)	-2010.0	NR_033221	414072.0	Mm.483602	NR_033221		BC031361	-	cDNA sequence BC031361	ncRNA	2.63013608630836	2.50683799109128	2.42148855751867	2.35250361106919	2.46892534331785	3.22237828631105	2.96162595784455	1.43275394188231	0.412271413924334	0.622475721356085	0.979980438585101
Merged-chr8-39060161-3	chr8	39060091	39060291	+	777.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357304, intron 2 of 7)	ORR1D1|LTR|ERVL-MaLR	54346.0	NM_001357306	80286.0	Mm.272722	NM_030254	ENSMUSG00000039530	Tusc3	AU022242|BC003311|N33	tumor suppressor candidate 3	protein-coding	2.52573101631876	1.16985424661155	2.36581217326558	2.4600699704724	1.48713222599752	2.00275673187987	1.14861968753486	1.72607131155573	-1.61646328539365	0.136170939716089	0.576085661041479
Merged-chr2-112501394-3	chr2	112501236	112501436	+	627.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028844, intron 1 of 5)	intron (NM_028844, intron 1 of 5)	8372.0	NM_028844	74268.0	Mm.315125	NM_028844	ENSMUSG00000003604	Aven	1700013A01Rik|1700056A21Rik|mAven-L|mAven-S	apoptosis, caspase activation inhibitor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-43040228-3	chr17	43040131	43040331	+	929.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178589, intron 3 of 5)	intron (NM_178589, intron 3 of 5)	23676.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64677177-4	chr5	64677077	64677277	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66478.0	NR_045078	100042198.0	Mm.25191	NR_045078	ENSMUSG00000105402	Gm3716	Gm1683	predicted gene 3716	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-142595819-2	chr2	142595719	142595919	+	857.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	305645.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-99557398-2	chr12	99557298	99557498	+	887.625	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6443.0	NR_136760	102639404.0	Mm.396324	NR_136760	ENSMUSG00000097917	Gm26839	-	predicted gene, 26839	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-101759257-3	chr13	101759058	101759258	+	907.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077495, intron 1 of 15)	intron (NM_001077495, intron 1 of 15)	9059.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-31079372-3	chr17	31079297	31079497	+	686.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009593, intron 2 of 14)	intron (NM_009593, intron 2 of 14)	21703.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	0.576804891110505	-0.0134963481208269	0.411011573416146	0.132398706726681	0.11003421840039	-0.012437141961149	-0.0171517467451206	0.135153023599158	-2.18681670171051	0.291095467890598	1
Merged-chr4-152333190-4	chr4	152333090	152333290	+	827.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_102292, exon 5 of 5)	non-coding (NR_102292, exon 5 of 5)	-5461.0	NM_029216	269610.0	Mm.40192	NM_029216	ENSMUSG00000005045	Chd5	4930532L22Rik|AW060752|B230399N07Rik|CHD-5	chromodomain helicase DNA binding protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-129530584-2	chr7	129530484	129530684	+	761.700012	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-61279.0	NM_172255	207425.0	Mm.229323	NM_172255	ENSMUSG00000042055	Wdr11	2900055P10Rik|AW489876|Brwd2|mKIAA1351	WD repeat domain 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-53128766-3	chr15	53128667	53128867	+	607.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	217416.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-55865871-2	chr7	55865771	55865971	+	659.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164661, intron 2 of 31)	intron (NM_001164661, intron 2 of 31)	23800.0	NM_001164661	20430.0	Mm.37249	NM_011370	ENSMUSG00000030447	Cyfip1	E030028J09Rik|P140SRA-1|P140sra1|Shyc|Sra-1|Sra1|l(7)1Rl|l71Rl|l7Rl1|mKIAA0068|pl-1	cytoplasmic FMR1 interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-63089663-3	chr4	63089557	63089757	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028326, intron 4 of 14)	intron (NM_028326, intron 4 of 14)	64515.0	NM_007443	11699.0	Mm.2197	NM_007443	ENSMUSG00000028356	Ambp	AI194774|ASPI|HI-30|Intin4|Itil|UTI	alpha 1 microglobulin/bikunin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-41887384-4	chr10	41887275	41887475	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001013370)	promoter-TSS (NM_001013370)	-64.0	NM_001013370	140742.0	Mm.139418	NM_001013370	ENSMUSG00000038332	Sesn1	1110002G11Rik|AU044290|Pa26|Sest1	sestrin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56016888-2	chr17	56016788	56016988	+	550.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_026530)	TTS (NM_026530)	7687.0	NM_026530	68047.0	Mm.358710	NM_026530	ENSMUSG00000003199	Mpnd	E130307M08Rik	MPN domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-62746140-2	chr11	62746040	62746240	+	722.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17047.0	NM_133208	170740.0	Mm.339982	NM_133208	ENSMUSG00000005267	Zfp287	B230333C16Rik|SKAT-2|Skat2|Znf287|mszf16|mszf74	zinc finger protein 287	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-58239205-3	chr15	58239059	58239259	+	806.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-24267.0	NM_026346	67731.0	Mm.25683	NM_026346	ENSMUSG00000022358	Fbxo32	4833442G10Rik|AI430017|ATROGIN1|Gm20361|MAFbx	F-box protein 32	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-38349216-3	chr6	38349103	38349303	+	853.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028864, intron 1 of 8)	B2_Mm1a|SINE|B2	5400.0	NM_001347122	78781.0	Mm.25243	NM_028421	ENSMUSG00000029826	Zc3hav1	1200014N16Rik|2900058M19Rik|9130009D18Rik|9830115L13Rik|ARTD13|D6Bwg1452e|ZAP	zinc finger CCCH type, antiviral 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-27232289-2	chr7	27232189	27232389	+	660.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133770)	promoter-TSS (NM_133770)	-724.0	NM_133770	76889.0	Mm.124728	NM_133770	ENSMUSG00000003762	Coq8b	0610012P18Rik|Adck4	coenzyme Q8B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-121819988-4	chr3	121819879	121820079	+	830.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4677.0	NM_008991	19299.0	Mm.399042	NM_008991	ENSMUSG00000028127	Abcd3	AI313901|AU018866|AW146054|PMP68|PMP70|Pxmp1	ATP-binding cassette, sub-family D (ALD), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-97767095-2	chr3	97766995	97767195	+	1000.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_110360, exon 1 of 17)	non-coding (NR_110360, exon 1 of 17)	919.0	NM_178080	83679.0	Mm.129840	NM_031401	ENSMUSG00000038170	Pde4dip	4732458A06Rik|9430063L05Rik|C87016|D130016K21Rik|D3Bwg1078e|Usmg4|mKIAA0454	phosphodiesterase 4D interacting protein (myomegalin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-16832411-2	chr5	16832311	16832511	+	852.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	278510.0	NM_001289461	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-17021770-2	chr7	17021670	17021870	+	679.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011155, intron 2 of 12)	intron (NM_011155, intron 2 of 12)	6144.0	NM_011155	19060.0	Mm.3294	NM_011155	ENSMUSG00000003099	Ppp5c	AU020526|PP5	protein phosphatase 5, catalytic subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-110734275-2	chr9	110734175	110734375	+	761.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083936, intron 1 of 13)	intron (NM_001083936, intron 1 of 13)	8335.0	NM_001083936	19228.0	Mm.3542	NM_011199	ENSMUSG00000032492	Pth1r	PPR|Pthr|Pthr1	parathyroid hormone 1 receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-122316823-2	chr3	122316723	122316923	+	583.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23120.0	NR_030439	791077.0		NR_030439	ENSMUSG00000076456	Mir760	Mirn760|mir-760|mmu-mir-760	microRNA 760	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-57706752-2	chr14	57706652	57706852	+	780.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_015771, intron 2 of 7)	MLTR11A|LTR|ERVK	27666.0	NM_153382	50523.0	Mm.347899	NM_015771	ENSMUSG00000021959	Lats2	4932411G09Rik|AV277261|AW228608	large tumor suppressor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-130825984-2	chr4	130825884	130826084	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011520, exon 5 of 5)	3' UTR (NM_011520, exon 5 of 5)	33447.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-68801618-3	chr18	68801526	68801726	+	795.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	62226.0	NR_105774	102465183.0		NR_105774	ENSMUSG00000099300	Mir6356	Gm27461|mmu-mir-6356	microRNA 6356	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-27931596-2	chr15	27931496	27931696	+	772.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081302, intron 1 of 56)	B1_Mus2|SINE|Alu	94252.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-78222234-2	chr16	78222134	78222334	+	724.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16E2|LTR|ERVL	33220.0	NR_045698	100503619.0	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-121318446-3	chr14	121318360	121318560	+	933.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145465, intron 2 of 10)	intron (NM_145465, intron 2 of 10)	60770.0	NM_145465	223255.0	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-46493997-2	chr18	46493857	46494057	+	796.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28141.0	NR_045438	72076.0	Mm.82766	NM_028086		Mospd4	2010013H21Rik	motile sperm domain containing 4	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141047513-2	chr7	141047413	141047613	+	607.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR40b|LTR|ERVL	-13761.0	NM_177897	330671.0	Mm.133741	NM_177897	ENSMUSG00000055629	B4galnt4	BC038881|Gm1095|beta4GalNAcT4	beta-1,4-N-acetyl-galactosaminyl transferase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-101914892-4	chr13	101914810	101915010	+	903.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-146693.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118736180-2	chr9	118736080	118736280	+	600.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 1 of 13)	intron (NM_001113514, intron 1 of 13)	24488.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16999877-4	chr7	16999788	16999988	+	870.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5300.0	NM_001101535	434130.0	Mm.459162	NM_001101535	ENSMUSG00000041117	Ccdc8	-	coiled-coil domain containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-81326026-2	chr7	81325926	81326126	+	727.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008803, intron 18 of 21)	intron (NM_008803, intron 18 of 21)	19208.0	NM_009092	20068.0	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-52101101-2	chr11	52101001	52101201	+	617.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019411, intron 1 of 6)	URR1A|DNA|hAT-Charlie	2277.0	NM_019411	19052.0	Mm.260288	NM_019411	ENSMUSG00000020349	Ppp2ca	PP2A|R75353	protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-86935451-4	chr5	86935357	86935557	+	977.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx10|LINE|L1	-8954.0	NM_152811	71773.0	Mm.26741	NM_152811	ENSMUSG00000035836	Ugt2b1	1300012D20Rik	UDP glucuronosyltransferase 2 family, polypeptide B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-70412464-1	chr16	70412364	70412564	+	657.0	f0_balb.idr	intron (NM_028803, intron 3 of 15)	Lx8|LINE|L1	98515.0	NM_028803	74185.0	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	1.6101745662678	1.17047402508544	2.12471546128127	1.1267272117802	2.37058231558844	1.96863649282726	1.9012114180921	2.2630711470967	1.5796505891068	0.145857226851108	0.596091332081597
Merged-chr10-117393419-4	chr10	117393327	117393527	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16454.0	NM_001310609	432508.0	Mm.478881	NM_001013391	ENSMUSG00000055531	Cpsf6	4733401N12Rik|AI256641|CFIM|CFIM68|HPBRII-4|HPBRII-7	cleavage and polyadenylation specific factor 6	protein-coding	6.21136194144367	6.70296976959148	6.42846256130214	6.24190356977798	6.2232686950878	6.34095479793419	6.4975850227366	6.04078793427468	-0.131209677359157	0.541808032131599	0.954866069207078
Merged-chr11-20169166-4	chr11	20169061	20169261	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32251.0	NM_008996	19324.0	Mm.271944	NM_008996	ENSMUSG00000020149	Rab1a	Gtbp|Rab-1|Rab1|Ypt1|mKIAA3012	RAB1A, member RAS oncogene family	protein-coding	4.19328973623207	4.33977212167096	4.95665382555161	3.4885425560709	4.62074200645982	3.75481071362072	4.55281848913189	4.22170883609587	-0.00754681696755985	0.986716341335816	0.998431161219273
Merged-chr10-80712784-2	chr10	80712684	80712884	+	556.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_007460, exon 21 of 31)	exon (NM_007460, exon 21 of 31)	10091.0	NM_027829	71564.0	Mm.35802	NM_027829	ENSMUSG00000055862	Izumo4	9030607L17Rik|AI550407	IZUMO family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25705890-4	chr7	25705771	25705971	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011577)	TTS (NM_011577)	13182.0	NM_028771	52132.0	Mm.278798	NM_028771	ENSMUSG00000002608	Ccdc97	1200014H14Rik|2810446P04Rik|AA545218|D7Ertd462e	coiled-coil domain containing 97	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-33245092-4	chr14	33244997	33245197	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153800, intron 2 of 10)	intron (NM_153800, intron 2 of 10)	28274.0	NM_153800	239027.0	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70843485-2	chr8	70843385	70843585	+	764.333374	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_032397, exon 10 of 10)	3' UTR (NM_032397, exon 10 of 10)	-3765.0	NM_027560	70807.0	Mm.24215	NM_027560	ENSMUSG00000002910	Arrdc2	4632416I05Rik|Ilad1	arrestin domain containing 2	protein-coding	-2.18308165884198	-2.15547475440471	-2.16382331017202	-2.1706810624505	-2.18114370519566	-2.15366558754311	-2.03057248461154	-2.16945352807143	0.759018020146679	0.829933115115583	1
Merged-chr1-180229214-2	chr1	180229114	180229314	+	568.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001128605, intron 9 of 10)	intron (NM_001128605, intron 9 of 10)	16736.0	NM_011183	19165.0	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-26376885-3	chr10	26376782	26376982	+	755.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1663.0	NM_172787	237339.0	Mm.338439	NM_172787	ENSMUSG00000039089	L3mbtl3	AI481284|MBT-1	L3MBTL3 histone methyl-lysine binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-5309912-2	chr9	5309812	5310012	+	932.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_007609, intron 1 of 8)	intron (NM_007609, intron 1 of 8)	1063.0	NM_007609	12363.0	Mm.1569	NM_007609	ENSMUSG00000033538	Casp4	CASP-11|CASP-4|Casp11|Caspl|ich-3	caspase 4, apoptosis-related cysteine peptidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166270218-3	chr2	166270094	166270294	+	768.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28B|LTR|ERVL	-3714.0	NR_033467	670775.0	Mm.384326	NR_033467	ENSMUSG00000084840	Gm11468	-	predicted gene 11468	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-26917765-4	chr8	26917670	26917870	+	913.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB7|LINE|L1	-59566.0	NM_001101502	353310.0	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-96921895-2	chr12	96921795	96921995	+	570.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	-874673.0	NR_103800	69423.0	Mm.46121	NM_027076		1700019M22Rik	-	NFX-like protein	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-31111653-4	chr6	31111503	31111703	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110471, intron 3 of 3)	intron (NR_110471, intron 3 of 3)	-48510.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-72292572-2	chr8	72292472	72292672	+	602.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26490.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-76980322-2	chr2	76980222	76980422	+	784.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028004, intron 1 of 191)	intron (NM_028004, intron 1 of 191)	2225.0	NM_028004	22138.0	Mm.373672	NM_011652	ENSMUSG00000051747	Ttn	1100001C23Rik|2310036G12Rik|2310057K23Rik|2310074I15Rik|AF006999|AV006427|D330041I19Rik|D830007G01Rik|L56|mdm|shru	titin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141637637-2	chr7	141637537	141637737	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001330001, intron 31 of 33)	intron (NM_001330001, intron 31 of 33)	16936.0	NR_106030	102466798.0		NR_106030	ENSMUSG00000098759	Mir7063	Gm27654|mmu-mir-7063	microRNA 7063	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30679748-4	chr2	30679661	30679861	+	844.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-1750.0	NR_136917	665635.0	Mm.450149	NR_136917		Gm14486	-	predicted gene 14486	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-5707701-4	chr11	5707600	5707800	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026080)	promoter-TSS (NM_026080)	-1.0	NM_026080	64660.0	Mm.7328	NM_026080	ENSMUSG00000020477	Mrps24	3110030K20Rik|AI414579|Rpms24	mitochondrial ribosomal protein S24	protein-coding	4.54028062233273	4.57546437633236	4.2577493428981	3.53321132543601	4.41477967318771	5.20952855164771	5.02615080049194	4.74360154556526	0.737185423559947	0.0635188599637134	0.375541696046961
Merged-chr9-71162312-3	chr9	71162207	71162407	+	847.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_073483, intron 1 of 6)	RSINE1|SINE|B4	326.0	NM_001271843	64008.0	Mm.449427	NM_022026	ENSMUSG00000032204	Aqp9	1700020I22Rik|AI266899|AQP-9	aquaporin 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-86428336-4	chr4	86428273	86428473	+	868.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_029967)	TTS (NM_029967)	129930.0	NM_001081096	75811.0	Mm.56451	NM_001081096	ENSMUSG00000028492	Saxo1	4930500O09Rik|Fam154a	stabilizer of axonemal microtubules 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-144049358-2	chr3	144049258	144049458	+	630.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	152974.0	NM_001161770	16911.0	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-98238656-4	chr12	98238554	98238754	+	829.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008079, intron 7 of 16)	MTC|LTR|ERVL-MaLR	20805.0	NM_008079	14420.0	Mm.5120	NM_008079	ENSMUSG00000021003	Galc	2310068B06Rik|A930008M05Rik|AW212969|AW413532|Gacy|twi|twitcher	galactosylceramidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-43010641-2	chr6	43010541	43010741	+	679.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	G-rich|Low_complexity|Low_complexity	55141.0	NM_146656	258650.0	Mm.377613	NM_146656	ENSMUSG00000073110	Olfr444	MOR261-2	olfactory receptor 444	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33186298-4	chr16	33186188	33186388	+	902.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176840, intron 1 of 12)	intron (NM_176840, intron 1 of 12)	1217.0	NM_176840	106326.0	Mm.486405	NM_176840	ENSMUSG00000022807	Osbpl11	9430097N02Rik|AI132306|AU019795|ORP-11	oxysterol binding protein-like 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-27337345-3	chr14	27337246	27337446	+	847.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289687, intron 1 of 9)	intron (NM_001289687, intron 1 of 9)	1309.0	NM_001289687	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-110184857-4	chr7	110184768	110184968	+	920.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MEi|LINE|L1	-36835.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124536920-4	chr5	124536792	124536992	+	862.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3899.0	NM_019770	56334.0	Mm.325307	NM_019770	ENSMUSG00000029390	Tmed2	1110032D12Rik|1810020N21Rik|Rnp24|Sid394|p24beta1	transmembrane p24 trafficking protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70655864-1	chr8	70655764	70655964	+	606.0	f1_c57bl6.idr	intron (NM_023217, intron 2 of 4)	intron (NM_023217, intron 2 of 4)	3874.0	NM_023217	66522.0	Mm.154906	NM_023217	ENSMUSG00000056204	Pgpep1	2810003H13Rik|Gm19458|PAP-I|PGP|PGP-I|PGPI|Pcp	pyroglutamyl-peptidase I	protein-coding	-0.0146788677547934	0.616091871489275	0.004516500869369	1.33014189838649	0.175883293031753	0.0156219902069408	0.00653405896634718	-0.0013560309188051	-3.60921524263718	0.0836979054752926	1
Merged-chr10-99467556-8	chr10	99467466	99467666	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-141605.0	NR_038019	100504202.0	Mm.403801	NR_038019	ENSMUSG00000111962	Gm20110	-	predicted gene, 20110	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-113704924-3	chr9	113704842	113705042	+	931.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164678, intron 1 of 17)	intron (NM_001164678, intron 1 of 17)	3317.0	NM_001164678	18571.0	Mm.29816	NM_011052	ENSMUSG00000032504	Pdcd6ip	AI480591|AW544830|Aip1|Alix|C76364|Eig2|mKIAA1375	programmed cell death 6 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-45507485-4	chr13	45507396	45507596	+	922.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025508)	promoter-TSS (NM_025508)	52.0	NM_025508	66355.0	Mm.290802	NM_025508	ENSMUSG00000000253	Gmpr	2310004P21Rik|AV028449|GMPR 1	guanosine monophosphate reductase	protein-coding	1.22192445162548	2.0313905488736	2.98833069353308	2.83571377004728	2.09052772616117	2.04673379580174	2.60961989945099	1.73924795535512	-0.642061805589356	0.504151895191592	0.940284522133039
Merged-chr14-25494401-2	chr14	25494301	25494501	+	682.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	35216.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-29433615-3	chr6	29433556	29433756	+	789.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001311074, exon 1 of 47)	exon (NM_001311074, exon 1 of 47)	400.0	NM_001311074	68794.0	Mm.39046	NM_026839	ENSMUSG00000068699	Flnc	1110055E19Rik|ABP-280|ABPL|Fln2	filamin C, gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-6163348-2	chr2	6163248	6163448	+	765.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29903.0	NR_040333	320132.0	Mm.445891	NR_040333	ENSMUSG00000087125	A230108P19Rik	-	RIKEN cDNA A230108P19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-149158833-3	chr4	149158727	149158927	+	768.922241	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081274, intron 6 of 12)	intron (NM_001081274, intron 6 of 12)	7255.0	NM_001356332	110208.0	Mm.252080	NM_025801	ENSMUSG00000028961	Pgd	0610042A05Rik|AU019875|C78335	phosphogluconate dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-73369164-2	chr14	73369064	73369264	+	648.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008410, intron 1 of 5)	intron (NM_008410, intron 1 of 5)	16125.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91483668-4	chr2	91483553	91483753	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172668, intron 16 of 37)	B3|SINE|B2	26122.0	NM_001145857	228357.0	Mm.275149	NM_172668	ENSMUSG00000027253	Lrp4	6430526J12Rik|D230026E03|Megf7|mdig	low density lipoprotein receptor-related protein 4	protein-coding	3.78436781124403	2.82372434032057	3.57926855830053	3.09284350266196	3.12677383718868	2.84478540846201	3.20583036542649	3.01173283086608	-0.55111275803878	0.36043979258877	0.856460911964629
Merged-chr10-117879369-6	chr10	117879251	117879451	+	947.4833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33377.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-111992822-3	chr10	111992752	111992952	+	904.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028608, intron 2 of 5)	intron (NM_028608, intron 2 of 5)	4412.0	NM_028608	73690.0	Mm.173790	NM_028608	ENSMUSG00000056888	Glipr1	2410114O14Rik|RTVP-1|RTVP1|mRTVP-1	GLI pathogenesis-related 1 (glioma)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-88354405-2	chr10	88354305	88354505	+	984.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027878, intron 1 of 6)	ID|SINE|ID	2670.0	NM_027878	71712.0	Mm.35450	NM_027878	ENSMUSG00000020057	Dram1	1200002N14Rik|Dram	DNA-damage regulated autophagy modulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-15306567-2	chr4	15306554	15306754	+	713.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40834.0	NM_181401	100201.0	Mm.394111	NM_181401	ENSMUSG00000043252	Tmem64	9630015D15Rik|AI790744|AV300874	transmembrane protein 64	protein-coding	-0.0536627682246039	-0.108353154957756	-0.604695171085973	-0.607435172441891	-0.611301543681756	-0.600336643955926	-0.603911289790285	-0.606956736004148	-3.33943558984809	0.233364164187965	1
Merged-chr6-38974045-4	chr6	38973945	38974145	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 3 of 12)	intron (NM_011539, intron 3 of 12)	55059.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-140750686-4	chr6	140750590	140750790	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	123805.0	NM_001309436	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-54013442-4	chr5	54013360	54013560	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081103, intron 1 of 11)	intron (NM_001081103, intron 1 of 11)	14937.0	NM_001081103	116873.0	Mm.265985	NM_054083	ENSMUSG00000039156	Stim2	-	stromal interaction molecule 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-96476919-4	chr7	96476803	96477003	+	930.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011858, intron 3 of 32)	intron (NM_011858, intron 3 of 32)	-134939.0	NR_046043	670727.0	Mm.421352	NR_046043	ENSMUSG00000085751	Gm15412	-	predicted gene 15412	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-25583089-2	chr2	25582989	25583189	+	762.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001024616)	TTS (NM_001024616)	-2990.0	NM_001005424	381353.0	Mm.379511	NM_001005424	ENSMUSG00000029419	Gm996	Ajm1	predicted gene 996	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-34717593-2	chr10	34717493	34717693	+	812.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus1|LINE|L1	234193.0	NM_010237	14302.0	Mm.332432	NM_010237	ENSMUSG00000019779	Frk	BSK|BSK/IYK|C85044|GTK|RAK	fyn-related kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122989177-3	chr8	122989073	122989273	+	748.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 1 of 12)	intron (NM_001081379, intron 1 of 12)	53111.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44509637-2	chr9	44509537	44509737	+	960.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_030256, exon 9 of 9)	exon (NM_030256, exon 9 of 9)	10501.0	NM_030256	80288.0	Mm.370270	NM_030256	ENSMUSG00000063382	Bcl9l	B9L|BC003321|BCL9-2|DLNB11	B cell CLL/lymphoma 9-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-24445719-3	chr7	24445618	24445818	+	811.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199013)	promoter-TSS (NM_199013)	-36.0	NM_199013	210145.0	Mm.33811	NM_199013	ENSMUSG00000062028	Irgc1	F630044M05Rik|Gm1102|Gm474|Ifgge|Iigp5|Irgc	immunity-related GTPase family, cinema 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-79774611-4	chr2	79774511	79774711	+	756.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290743, intron 4 of 4)	intron (NM_001290743, intron 4 of 4)	66831.0	NM_001290743	75276.0	Mm.257373	NM_172420	ENSMUSG00000034683	Ppp1r1c	4930565M23Rik|4930579P15Rik	protein phosphatase 1, regulatory (inhibitor) subunit 1C	protein-coding	1.9561089005985	1.53117599020861	2.43043064432526	2.52185796582904	2.07601543597828	1.92653170574122	1.2566422821322	2.18190681561271	-0.673131160755686	0.500303757555005	0.938059363548374
Merged-chr19-42539945-2	chr19	42539845	42540045	+	743.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177464, intron 1 of 6)	intron (NM_177464, intron 1 of 6)	21140.0	NM_177464	52013.0	Mm.254169	NM_177464	ENSMUSG00000025184	R3hcc1l	1700036B12Rik|AI450607|C10orf28|D19Ertd386e|GIDRP86|Gidrp88	R3H domain and coiled-coil containing 1 like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-34662230-4	chr19	34662144	34662344	+	973.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER20|DNA|hAT-Charlie	21355.0	NM_008331	15957.0	Mm.439751	NM_008331	ENSMUSG00000034459	Ifit1	ISG56|Ifi56|P56	interferon-induced protein with tetratricopeptide repeats 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-79339951-2	chr15	79339849	79340049	+	623.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6672.0	NM_001304830	17133.0	Mm.86646	NM_010755	ENSMUSG00000042622	Maff	-	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein F (avian)	protein-coding	-1.53362919331644	-1.50201671710775	-1.51157659084044	-1.08120497225282	-1.53141005593807	-1.49994505258991	-1.50941244497383	-1.51802371459528	-1.94474658522739	0.577200604274218	1
Merged-chr10-107734752-2	chr10	107734652	107734852	+	584.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14725.0	NM_001081432	237523.0	Mm.391418	NM_001081432	ENSMUSG00000035916	Ptprq	-	protein tyrosine phosphatase, receptor type, Q	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-30190580-4	chr14	30190487	30190687	+	996.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083616, intron 4 of 46)	L1VL4|LINE|L1	162899.0	NM_001302637	12289.0	Mm.9772	NM_028981	ENSMUSG00000015968	Cacna1d	8430418G19Rik|C79217|Cach3|Cacn4|Cacnl1a2|Cav1.3|Cchl1a|Cchl1a2|D-LTCC	calcium channel, voltage-dependent, L type, alpha 1D subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-80714021-2	chr1	80713921	80714121	+	689.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175291, intron 1 of 55)	intron (NM_175291, intron 1 of 55)	44532.0	NM_175291	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-67585407-3	chr17	67585273	67585473	+	941.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155516, intron 2 of 2)	intron (NR_155516, intron 2 of 2)	43959.0	NR_155516	102640031.0	Mm.421441	NR_155516		Gm36201	-	predicted gene, 36201	ncRNA	1.56072869021752	2.63491916285573	2.43616913899737	1.43504226760276	1.37213702916631	3.14693364800059	2.65650902207271	1.44253714151301	0.563235887105786	0.576479196019877	0.965286201225318
Merged-chr5-137684848-4	chr5	137684766	137684966	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001303266)	promoter-TSS (NM_001303266)	-113.0	NM_001303266	231801.0	Mm.260869	NM_145566	ENSMUSG00000029722	Agfg2	A630095P14Rik|Hrbl|RAB-R|RABR	ArfGAP with FG repeats 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-106545760-4	chr3	106545662	106545862	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293694, intron 1 of 8)	intron (NM_001293694, intron 1 of 8)	1863.0	NM_001357818	99712.0	Mm.429443	NM_133869	ENSMUSG00000040774	Cept1	9930118K05Rik|mCEPT1	choline/ethanolaminephosphotransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115503218-1	chr5	115503118	115503318	+	926.0	f1_balb.idr	Intergenic	Intergenic	-3458.0	NM_011223	19303.0	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	2.81859544341752	1.42543041218604	2.42515644038364	2.20323009223408	1.752323621235	3.49938968914622	2.29404177908199	3.74472450911554	1.37940657249869	0.113024980923089	0.52650449242973
Merged-chr9-41044773-2	chr9	41044677	41044877	+	744.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_176860, intron 4 of 13)	intron (NM_176860, intron 4 of 13)	34729.0	NM_001357412	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-43605193-2	chr7	43605093	43605293	+	603.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-1976.0	NM_001355131	74400.0	Mm.159188	NM_028913	ENSMUSG00000055102	Zfp819	4930427I11Rik|4933405K07Rik	zinc finger protein 819	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127879361-2	chr10	127879261	127879461	+	611.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	9338.0	NM_017473	54150.0	Mm.6696	NM_017473	ENSMUSG00000040134	Rdh7	AI194929|CRAD2	retinol dehydrogenase 7	protein-coding	-1.58994551673671	-1.55912852307891	-1.56844783632235	-1.57610299769523	-1.18549093183599	-1.55710898902261	-1.56633814807757	-1.57473272746952	1.78703309985663	0.610309988231842	1
Merged-chr7-97356930-4	chr7	97356821	97357021	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14696.0	NM_199035	381903.0	Mm.279683	NM_199035	ENSMUSG00000035704	Alg8	AI447372|Gm1089	asparagine-linked glycosylation 8 (alpha-1,3-glucosyltransferase)	protein-coding	3.10314175851861	3.04099729137274	3.03570137594265	2.23295790380227	2.98745682646833	2.95586738688824	2.31464898942673	3.20846475736962	0.0197728019908781	0.977123354833194	0.998431161219273
Merged-chr3-144617936-4	chr3	144617832	144618032	+	912.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47505.0	NM_053102	93684.0	Mm.29812	NM_053102	ENSMUSG00000037072	Selenof	9430015P09Rik|Sep15	selenoprotein F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-25097980-4	chr12	25097874	25098074	+	847.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1882.0	NM_010496	15902.0	Mm.34871	NM_010496	ENSMUSG00000020644	Id2	AI255428|C78922|Idb2|bHLHb26	inhibitor of DNA binding 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19851018-2	chr7	19850918	19851118	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001270489)	promoter-TSS (NM_001270489)	-985.0	NM_001270489	100502736.0	Mm.445354	NM_001270489	ENSMUSG00000092216	Gm19345	-	predicted gene, 19345	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-22001350-2	chr10	22001250	22001450	+	918.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur2|SINE|Alu	6684.0	NM_011361	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-45471943-2	chr17	45471843	45472043	+	727.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357832, intron 1 of 6)	intron (NM_001357832, intron 1 of 6)	2995.0	NM_027649	71020.0	Mm.44257	NM_027649	ENSMUSG00000023935	Spats1	1700011H05Rik|4933400B06Rik|Ddip|Srsp1	spermatogenesis associated, serine-rich 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-63907912-2	chr7	63907812	63908012	+	750.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021366, intron 1 of 1)	intron (NM_021366, intron 1 of 1)	-8945.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-46481635-2	chr11	46481535	46481735	+	743.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_134250)	TTS (NM_134250)	26704.0	NM_134250	171285.0	Mm.72168	NM_134250	ENSMUSG00000020399	Havcr2	TIM-3|Tim3|Timd3	hepatitis A virus cellular receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-77776239-2	chr11	77776139	77776339	+	708.333313	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291212)	promoter-TSS (NM_001291212)	-996.0	NM_001291213	360013.0	Mm.341248	NM_011586	ENSMUSG00000000631	Myo18a	MAJN|MyoPDZ|MysPDZ|SP-R210	myosin XVIIIA	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-103967060-4	chr2	103966990	103967190	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142337, intron 1 of 3)	intron (NM_001142337, intron 1 of 3)	-2467.0	NM_001142336	16909.0	Mm.29266	NM_008505	ENSMUSG00000032698	Lmo2	Rbtn-2|Rbtn2|Rhom-2|Ttg2	LIM domain only 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-110156483-1	chr7	110156383	110156583	+	551.0	f1_balb.idr	Intergenic	Intergenic	34424.0	NM_009516	22390.0	Mm.287173	NM_009516	ENSMUSG00000031016	Wee1	Wee1A	WEE 1 homolog 1 (S. pombe)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-128145863-3	chr6	128145757	128145957	+	607.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2279.0	NM_001356301	109246.0	Mm.21814	NM_175414	ENSMUSG00000030352	Tspan9	6720474K14Rik|9430079M16Rik|AU018597|Tspan-9	tetraspanin 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-20926102-1	chr11	20926002	20926202	+	722.0	f0_balb.idr	Intergenic	Intergenic	-94994.0	NM_173752	216551.0	Mm.76694	NM_173752	ENSMUSG00000042363	Lgalsl	1110067D22Rik|A530071M23|Grpa|Hspc159|Lgalsla	lectin, galactoside binding-like	protein-coding	-1.05877568042897	-1.03501312238488	-1.04817210678232	-1.05426068996071	-1.05810152525527	-1.03216151557194	-0.188696606725984	-1.05378786495764	3.16074139804981	0.330468818528456	1
Merged-chr2-4601472-3	chr2	4601361	4601561	+	778.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177844, intron 8 of 11)	intron (NM_001177844, intron 8 of 11)	41707.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-28263625-2	chr5	28263525	28263725	+	683.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17837.0	NM_001310512	269637.0	Mm.68286	NM_175651	ENSMUSG00000044681	Cnpy1	1500012D20Rik|9630008K15Rik|AI853839	canopy FGF signaling regulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70903274-4	chr8	70903180	70903380	+	848.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2694.0	NM_173013	270058.0	Mm.248559	NM_173013	ENSMUSG00000019261	Map1s	6430517J16Rik|Bpy2ip1|Map8|Mtap1s|VCY2IP1	microtubule-associated protein 1S	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126643413-4	chr7	126643315	126643515	+	990.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-5894.0	NM_029339	75565.0	Mm.45686	NM_029339	ENSMUSG00000030714	Sgf29	1700023O11Rik|9530025I05Rik|Ccdc101	SAGA complex associated factor 29	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-53829459-2	chr9	53829359	53829559	+	874.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20792.0	NM_025540	66402.0	Mm.29132	NM_025540	ENSMUSG00000042045	Sln	2310045A07Rik	sarcolipin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114925737-2	chr11	114925637	114925837	+	842.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347651, intron 3 of 3)	ORR1A2|LTR|ERVL-MaLR	8649.0	NM_001347651	217304.0	Mm.185355	NM_199221	ENSMUSG00000063193	Cd300lb	CLM-7|Clm7|Gm253|LMIR5	CD300 molecule like family member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94148266-4	chr10	94148214	94148414	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011629, intron 1 of 13)	CpG	383.0	NM_011629	22025.0	Mm.107483	NM_011629	ENSMUSG00000005897	Nr2c1	4831444H07Rik|80.3|Eenr|TR2|Tr2-11	nuclear receptor subfamily 2, group C, member 1	protein-coding	3.27646227519671	4.06676763183214	4.17175400272611	4.42771443614043	4.08957999897582	3.713127559644	2.75780151304498	3.56108070417267	-0.602097955534671	0.255543217118586	0.754059891536841
Merged-chr5-135961297-2	chr5	135961206	135961406	+	728.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001160366, intron 10 of 10)	intron (NM_001160366, intron 10 of 10)	13170.0	NM_001160366	109267.0	Mm.332750	NM_001160366	ENSMUSG00000029699	Ssc4d	C330016E03Rik|S4D-SRCRB|SRCRB-S4D|Srcrb4d	scavenger receptor cysteine rich family, 4 domains	protein-coding	-0.297311554196136	-0.0879952837015588	0.478190171699777	-0.291496893728207	-0.2964465011662	-0.0832812589212003	-0.286993679566228	-0.122458328303613	-1.83608394526828	0.430386313134833	1
Merged-chr11-76897408-2	chr11	76897308	76897508	+	596.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7137.0	NM_025655	66601.0	Mm.25138	NM_025655	ENSMUSG00000020839	Tmigd1	2010002A20Rik|Tmigd	transmembrane and immunoglobulin domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-15948552-4	chr7	15948461	15948661	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_153068)	TTS (NM_153068)	-2453.0	NM_133831	68077.0	Mm.277634	NM_133831	ENSMUSG00000041560	Nop53	5330430H08Rik|9430097C02Rik|AU041936|AW536441|Gltscr2|PICT-1|R74911	NOP53 ribosome biogenesis factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-13597281-2	chr8	13597181	13597381	+	550.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 5 of 23)	intron (NM_009025, intron 5 of 23)	-34820.0	NM_001080781	66501.0	Mm.46136	NM_025601	ENSMUSG00000031452	1700029H14Rik	-	RIKEN cDNA 1700029H14 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-86656363-2	chr14	86656263	86656463	+	638.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_019670, exon 28 of 28)	exon (NM_019670, exon 28 of 28)	410393.0	NR_040457	75155.0	Mm.399239	NR_040457	ENSMUSG00000115271	4930529K09Rik	4930507G21Rik	RIKEN cDNA 4930529K09 gene	ncRNA	1.33057169647363	2.65685560276103	0.981807963980054	1.20611309106243	1.34223633988851	2.4379395636704	1.46254441529833	1.73261947020671	0.165169699809663	0.886662795232428	0.998431161219273
Merged-chr10-117083518-2	chr10	117083418	117083618	+	713.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177798, intron 5 of 9)	B3A|SINE|B2	-19666.0	NM_007636	12461.0	Mm.247788	NM_007636	ENSMUSG00000034024	Cct2	Cctb	chaperonin containing Tcp1, subunit 2 (beta)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-93403656-2	chr1	93403556	93403756	+	672.166626	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001271884, exon 24 of 24)	3' UTR (NM_001271884, exon 24 of 24)	29760.0	NM_001271884	404545.0	Mm.297411	NM_207031	ENSMUSG00000034107	Ano7	Ngep|Ngep-L|Pcanap5|Tmem16g	anoctamin 7	protein-coding	0.405210974074174	0.0495882084513742	0.0440715950804623	0.0398153184915919	0.82497458622366	0.0508317885461495	0.224585088401774	0.346104635474155	1.93434838664498	0.35752645656839	1
Merged-chr6-87537046-4	chr6	87536916	87537116	+	964.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3757.0	NM_001286610	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-60527330-1	chr18	60527230	60527430	+	613.0	f1_c57bl6.idr	intron (NM_026302, intron 1 of 12)	ID_B1|SINE|B4	1176.0	NM_001357462	67665.0	Mm.272801	NM_026302	ENSMUSG00000024603	Dctn4	1110001K06Rik|4930547K17Rik|C130039E17Rik|p62	dynactin 4	protein-coding	-0.953721354153451	-1.41025554057125	-1.42001056191158	-1.42802362688808	-1.44024889148474	-1.40814158675276	-1.41780223890411	-1.42658929208844	-2.11310844444413	0.543369238581748	1
Merged-chr17-69158011-2	chr17	69157911	69158111	+	970.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013813, intron 1 of 21)	intron (NM_013813, intron 1 of 21)	1267.0	NM_013813	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166446712-4	chr2	166446609	166446809	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015558)	promoter-TSS (NR_015558)	-742.0	NR_015558	319684.0	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-130078382-2	chr10	130078282	130078482	+	593.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	3970.0	NM_146671	258666.0	Mm.377628	NM_146671	ENSMUSG00000058251	Olfr822	MOR113-2	olfactory receptor 822	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81138978-2	chr10	81138878	81139078	+	979.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_010731, intron 1 of 2)	intron (NM_010731, intron 1 of 2)	2707.0	NM_010731	16969.0	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-66847298-3	chr14	66847215	66847415	+	932.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009955, intron 3 of 13)	intron (NM_009955, intron 3 of 13)	21285.0	NM_009955	12934.0	Mm.352648	NM_009955	ENSMUSG00000022048	Dpysl2	AI851130|Crmp2|DRP2|Musunc33|TOAD-64|Ulip2	dihydropyrimidinase-like 2	protein-coding	2.16344603034945	1.97214314152074	1.29895275896258	1.26986869565956	1.65354214242612	1.09780034802573	2.12685142452556	1.73833540902819	-0.108989022718499	0.923570836166941	0.998431161219273
Merged-chr9-108954850-1	chr9	108954750	108954950	+	687.0	f1_balb.idr	intron (NM_007738, intron 2 of 117)	intron (NM_007738, intron 2 of 117)	1105.0	NM_007738	12836.0	Mm.6200	NM_007738	ENSMUSG00000025650	Col7a1	AW209154	collagen, type VII, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117857371-2	chr11	117857271	117857471	+	599.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3381.0	NM_001085535	546519.0	Mm.385578	NM_001085535	ENSMUSG00000070330	Tmem235	Cldn27|Gm12581	transmembrane protein 235	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-58797552-4	chr1	58797434	58797634	+	996.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009812, intron 1 of 8)	intron (NM_009812, intron 1 of 8)	2160.0	NM_009812	12370.0	Mm.336851	NM_009812	ENSMUSG00000026029	Casp8	CASP-8|FLICE|MACH|Mch5	caspase 8	protein-coding	-1.52696403314699	-1.49523967873556	-1.5048333853602	-1.51271394162622	-1.52473704212565	-1.49316068248889	-1.50266158046844	-1.06847079017215	2.01069003169785	0.564432837776867	1
Merged-chr2-27306911-3	chr2	27306812	27307012	+	943.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_133905, intron 3 of 29)	L1MD|LINE|L1	-59609.0	NM_138665	192166.0	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-39656589-1	chr8	39656489	39656689	+	714.0	f0_balb.idr	Intergenic	Intergenic	-13911.0	NM_001113326	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	1.00872414937028	0.869811991649994	0.850838041461847	1.05762116771603	1.32871573057329	1.90848231245179	2.11232422893101	1.86503166942926	3.75938508063022	0.00763226221701278	0.0899527328877401
Merged-chr4-117019421-4	chr4	117019330	117019530	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355225)	promoter-TSS (NM_001355225)	28.0	NM_001111277	108067.0	Mm.34612	NM_175135	ENSMUSG00000028683	Eif2b3	1190002P15Rik	eukaryotic translation initiation factor 2B, subunit 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135149137-2	chr5	135149037	135149237	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_013763)	promoter-TSS (NM_013763)	-574.0	NM_013763	27368.0	Mm.36746	NM_013763	ENSMUSG00000005374	Tbl2	C76179|WS-bTRP	transducin (beta)-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-116981046-2	chr8	116980946	116981146	+	700.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_026572)	TTS (NM_026572)	-2087.0	NM_001357255	69528.0	Mm.272846	NM_027103	ENSMUSG00000031847	1700030J22Rik	-	RIKEN cDNA 1700030J22 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-40973512-2	chr13	40973412	40973612	+	651.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_155347, intron 1 of 4)	intron (NR_155347, intron 1 of 4)	-27498.0	NM_026550	68083.0	Mm.24789	NM_026550	ENSMUSG00000038683	Pak1ip1	5830431I15Rik|5930415H02Rik|AA419825|AI314040|AW556169|Gdpd1|PIP1	PAK1 interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-31068249-2	chr2	31068149	31068349	+	792.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355105, intron 6 of 15)	intron (NM_001355105, intron 6 of 15)	28251.0	NM_001177650	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-132154449-3	chr3	132154356	132154556	+	970.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020265, intron 1 of 3)	intron (NM_020265, intron 1 of 3)	69164.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-121766160-3	chr3	121766068	121766268	+	954.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008991, intron 20 of 22)	intron (NM_008991, intron 20 of 22)	42631.0	NM_010171	14066.0	Mm.273188	NM_010171	ENSMUSG00000028128	F3	AA409063|CD142|Cf-3|Cf3|TF	coagulation factor III	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-59072048-4	chr19	59071945	59072145	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114312, intron 1 of 16)	intron (NM_001114312, intron 1 of 16)	4024.0	NM_175172	71653.0	Mm.37338	NM_175172	ENSMUSG00000041362	Shtn1	4930506M07Rik|Shootin1|mKIAA1598	shootin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105859280-2	chr8	105859180	105859380	+	791.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	-1253.0	NM_026532	68051.0	Mm.455474	NM_026532	ENSMUSG00000008450	Nutf2	2700067I02Rik|AI115459|AI413596|AW546000|Ntf2|Ntf3|PP15	nuclear transport factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-87859641-2	chr10	87859541	87859741	+	809.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111275, intron 1 of 3)	intron (NM_001111275, intron 1 of 3)	589.0	NM_010512	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-3246443-1	chr16	3246343	3246543	+	938.0	f1_balb.idr	Intergenic	Intergenic	-345955.0	NM_146860	258859.0	Mm.377723	NM_146860	ENSMUSG00000051003	Olfr161	MOR131-1|OR912-47M6	olfactory receptor 161	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-98859328-2	chr15	98859228	98859428	+	714.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033276, intron 15 of 54)	RSINE1|SINE|B4	11877.0	NM_001033276	381022.0	Mm.264889	NM_001033276	ENSMUSG00000048154	Kmt2d	ALR|BC032281|BC058659|C430014K11Rik|KMT2B|Mll2|Mll4	lysine (K)-specific methyltransferase 2D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-111097060-2	chr5	111096960	111097160	+	562.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001267622, intron 3 of 22)	intron (NM_001267622, intron 3 of 22)	92916.0	NR_030482	735278.0		NR_030482	ENSMUSG00000076163	Mir701	Mirn701|mir-701|mmu-mir-701	microRNA 701	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-54091862-4	chr11	54091750	54091950	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9074.0	NM_001136076	18452.0	Mm.3705	NM_011031	ENSMUSG00000018906	P4ha2	AA407196|C76437|P4hl	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-162571579-4	chr1	162571445	162571645	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016796, intron 1 of 7)	CpG	717.0	NM_016796	53330.0	Mm.10699	NM_016796	ENSMUSG00000026696	Vamp4	D1Ertd147e|Vamp-4	vesicle-associated membrane protein 4	protein-coding	5.88428006155189	5.34831024738648	5.47608229693884	5.37193014787185	5.93832025071982	6.27257653245295	5.03367718877446	4.89066463567146	0.126376566428621	0.704531439921345	0.998431161219273
Merged-chr11-117177476-4	chr11	117177380	117177580	+	939.341675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22181.0	NM_001113486	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-26611084-2	chr11	26610984	26611184	+	845.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-17164.0	NM_001252447	69922.0	Mm.285351	NM_027260	ENSMUSG00000064090	Vrk2	2810003O05Rik|AI447698	vaccinia related kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-20285605-2	chr8	20285505	20285705	+	917.333374	f1_balb.idr|f1_c57bl6.idr	intron (NR_030708, intron 1 of 4)	B3A|SINE|B2	11827.0	NR_030708	547150.0	Mm.359054	NR_030708	ENSMUSG00000071796	6820431F20Rik	-	cadherin 11 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-31134845-4	chr3	31134737	31134937	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB4|LINE|L1	-15083.0	NM_008770	18417.0	Mm.4425	NM_008770	ENSMUSG00000037625	Cldn11	Claudin-11|Claudin11|Osp|Otm	claudin 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-10474067-1	chr10	10473967	10474167	+	674.0	f1_balb.idr	Intergenic	Intergenic	-1753.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	-0.387506821874925	-0.368519442834513	-0.374660790155072	-0.181830620520971	-0.209125067398325	0.7733031972758	-0.373299835839495	-0.378610725273173	3.13466995721874	0.182001821371908	1
Merged-chr4-152140632-4	chr4	152140514	152140714	+	793.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207687, intron 2 of 15)	intron (NM_207687, intron 2 of 15)	-4289.0	NM_207690	56226.0	Mm.264215	NM_019585	ENSMUSG00000028943	Espn	je	espin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-8856674-2	chr5	8856574	8856774	+	575.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011075, intron 25 of 27)	intron (NM_011075, intron 25 of 27)	-37047.0	NM_008830	18670.0	Mm.297825	NM_008830	ENSMUSG00000042476	Abcb4	Mdr2|Pgy-2|Pgy2|mdr-2	ATP-binding cassette, sub-family B (MDR/TAP), member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-144498536-3	chr3	144498451	144498651	+	940.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355234, intron 1 of 6)	intron (NM_001355234, intron 1 of 6)	71665.0	NM_011828	23908.0	Mm.12863	NM_011828	ENSMUSG00000040151	Hs2st1	2OST|AW214369|Hs2st|mKIAA0448	heparan sulfate 2-O-sulfotransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-67607301-2	chr5	67607201	67607401	+	756.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033415)	promoter-TSS (NM_001033415)	-582.0	NM_001033415	330096.0	Mm.442747	NM_001033415	ENSMUSG00000050010	Shisa3	D830007B15Rik	shisa family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-51741023-4	chr13	51740928	51741128	+	940.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001281880, intron 2 of 16)	intron (NM_001281880, intron 2 of 16)	52719.0	NM_001281880	20354.0	Mm.33903	NM_013660	ENSMUSG00000021451	Sema4d	CD100|Semacl2|Semaj|Semcl2|coll-4	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-15829371-1	chr17	15829271	15829471	+	564.0	f0_balb.idr	Intergenic	Intergenic	-2785.0	NM_178615	68799.0	Mm.293466	NM_178615	ENSMUSG00000048027	Rgmb	1110059F19Rik|DRAGON	repulsive guidance molecule family member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-63508411-3	chr4	63508330	63508530	+	897.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-12439.0	NM_001008791	73750.0	Mm.300397	NM_028640	ENSMUSG00000039137	Whrn	1110035G07Rik|AW122018|AW742671|C430046P22Rik|Dfnb31|Ush2d|wi	whirlin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-118740709-4	chr7	118740633	118740833	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027815, exon 1 of 31)	exon (NM_027815, exon 1 of 31)	462.0	NM_027815	71517.0	Mm.213298	NM_027815	ENSMUSG00000030982	9030624J02Rik	2610029J22Rik	RIKEN cDNA 9030624J02 gene	protein-coding	5.69759582001087	5.45478873290616	5.80910103111953	5.28831386543046	5.379859837168	5.81244999062144	5.42630048405753	5.5323178251138	-0.0413346306997362	0.877780639242636	0.998431161219273
Merged-chr4-108428460-4	chr4	108428340	108428540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21727.0	NM_024198	67305.0	Mm.20164	NM_024198	ENSMUSG00000028597	Gpx7	3110050F08Rik|AI327032|GPX6	glutathione peroxidase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-38944938-3	chr2	38944836	38945036	+	978.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172854, intron 2 of 7)	intron (NM_172854, intron 2 of 7)	12956.0	NM_172854	241327.0	Mm.103491	NM_172854	ENSMUSG00000046618	Olfml2a	4932431K08Rik|mFLJ00237	olfactomedin-like 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117417518-4	chr10	117417392	117417592	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29943.0	NR_152734	102634600.0	Mm.399106	NR_152734	ENSMUSG00000112344	Gm32141	-	predicted gene, 32141	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28693293-4	chr17	28693202	28693402	+	879.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168514, intron 2 of 12)	intron (NM_001168514, intron 2 of 12)	734.0	NM_001357724	26416.0	Mm.311337	NM_011951	ENSMUSG00000053436	Mapk14	CSBP2|Crk1|Csbp1|Mxi2|PRKM14|PRKM15|p38|p38-alpha|p38MAPK|p38a|p38alpha	mitogen-activated protein kinase 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-124103432-4	chr9	124103310	124103510	+	851.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009915, intron 1 of 2)	intron (NM_009915, intron 1 of 2)	1227.0	NM_009915	12772.0	Mm.6272	NM_009915	ENSMUSG00000049103	Ccr2	Cc-ckr-2|Ccr2a|Ccr2b|Ckr2|Ckr2a|Ckr2b|Cmkbr2|mJe-r	chemokine (C-C motif) receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-48794859-2	chr2	48794759	48794959	+	553.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19250.0	NM_007396	11480.0	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-8687910-2	chr4	8687810	8688010	+	899.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2496.0	NM_001277149	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-80934938-2	chr18	80934838	80935038	+	889.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001201569)	promoter-TSS (NM_001201569)	-880.0	NM_015805	50771.0	Mm.247138	NM_015805	ENSMUSG00000024566	Atp9b	AA934181|Atpc2b|IIb|MMR	ATPase, class II, type 9B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-117412311-4	chr2	117412309	117412509	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69532.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-136160784-2	chr4	136160684	136160884	+	683.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11490.0	NM_177733	242705.0	Mm.307932	NM_177733	ENSMUSG00000018983	E2f2	E2F-2	E2F transcription factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-5382533-4	chr2	5382363	5382563	+	908.607178	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030601, intron 1 of 1)	intron (NR_030601, intron 1 of 1)	3073.0	NR_030601	100124465.0		NR_030601	ENSMUSG00000078031	Mir466d	Mirn466d	microRNA 466d	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-139049062-4	chr3	139048994	139049194	+	840.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356388, intron 2 of 13)	intron (NM_001356388, intron 2 of 13)	26107.0	NM_145544	229877.0	Mm.28893	NM_145544	ENSMUSG00000028149	Rap1gds1	BC011279|GDS1	RAP1, GTP-GDP dissociation stimulator 1	protein-coding	1.54018273082839	1.21940145675274	1.18428441570376	2.32702396450589	1.72228953726903	2.80309703988511	2.93099433748933	2.53160132713323	2.13730193445196	0.0359964447306015	0.268696812864635
Merged-chr13-5938170-3	chr13	5938061	5938261	+	657.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	76672.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-38602245-1	chr18	38602145	38602345	+	631.666687	f1_c57bl6.idr	promoter-TSS (NM_011898)	promoter-TSS (NM_011898)	-977.0	NM_011898	24066.0	Mm.42038	NM_011898	ENSMUSG00000024427	Spry4	A030006O18Rik|sprouty4	sprouty RTK signaling antagonist 4	protein-coding	1.16809869592072	1.61384408773547	1.0840062097935	1.50369742623447	1.31292148267051	1.12424406451706	2.13625462722109	0.853539532675255	0.378773473175216	0.763671763303427	0.998431161219273
Merged-chr7-28374872-4	chr7	28374756	28374956	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-2194.0	NM_001083912	101497.0	Mm.235700	NM_138752	ENSMUSG00000037552	Plekhg2	AI194308|Clg|Cslg	pleckstrin homology domain containing, family G (with RhoGef domain) member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33530768-3	chr16	33530671	33530871	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083902, intron 1 of 11)	intron (NM_001083902, intron 1 of 11)	12176.0	NM_001083902	171286.0	Mm.35253	NM_134251	ENSMUSG00000035506	Slc12a8	CCC9|E330020C02Rik	solute carrier family 12 (potassium/chloride transporters), member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97115228-2	chr11	97115128	97115328	+	732.25	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_019507, exon 1 of 6)	5' UTR (NM_019507, exon 1 of 6)	103.0	NM_019507	57765.0	Mm.94519	NM_019507	ENSMUSG00000001444	Tbx21	TBT1|Tbet|Tblym	T-box 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34079791-4	chr17	34079715	34079915	+	956.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12564.0	NM_008206	15001.0	Mm.116	NM_008206	ENSMUSG00000024334	H2-Oa	H-2Oa	histocompatibility 2, O region alpha locus	protein-coding	4.8148517001533	3.78715691932524	4.72488965033785	4.14658778168772	4.46193382908365	5.06820500578658	4.88200020871315	4.62565083608243	0.412302736924479	0.291829751465475	0.796128548904676
Merged-chr19-57611775-4	chr19	57611705	57611905	+	962.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181415, intron 1 of 28)	CpG	771.0	NM_181415	226255.0	Mm.245340	NM_181415	ENSMUSG00000054843	Atrnl1	AI504415|AW555641|Alp|Atrnl|Atrnlp	attractin like 1	protein-coding	-0.838744431111553	-0.967661477087529	-0.979195247021739	-0.981413585692039	-0.322556765592868	-0.965025449784594	-0.977071948914488	-0.981026153577555	2.05182173054401	0.510146656116524	1
Merged-chr8-119823827-2	chr8	119823727	119823927	+	759.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028071, intron 2 of 3)	B4|SINE|B4	16752.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52071373-4	chr13	52071256	52071456	+	824.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-25385.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166524638-2	chr2	166524538	166524738	+	700.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39884.0	NR_152154	433503.0	Mm.491336	NR_152154		Gm29679	-	predicted gene, 29679	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24713079-2	chr17	24713011	24713211	+	789.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	4946.0	NM_026205	67504.0	Mm.46159	NM_026205	ENSMUSG00000008482	Rnf151	1700010O16Rik|AV047371	ring finger protein 151	protein-coding	1.25577758773009	0.38616088008053	0.376046544493602	0.368139449771838	1.34308135080535	0.388420779301505	1.04223122692928	0.36952754976693	0.851372714103771	0.656109201256455	1
Merged-chr1-170924712-4	chr1	170924607	170924807	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160215, intron 1 of 4)	intron (NM_001160215, intron 1 of 4)	2876.0	NM_145141	98752.0	Mm.1850	NM_145141	ENSMUSG00000038421	Fcrla	BB219290|FCRL|FCRL1|FREB|Fcrlm1|Fcrx|Freb1|mFREB|mFcrX	Fc receptor-like A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-115887913-4	chr3	115887851	115888051	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027193)	promoter-TSS (NM_027193)	108.0	NR_027894	68161.0	Mm.392043	NR_015487	ENSMUSG00000054426	A930005H10Rik	-	RIKEN cDNA A930005H10 gene	ncRNA	4.64518093951927	4.37040458867841	5.34193611299847	4.71566121834706	4.56794089005216	4.18871358656445	5.37666878082834	4.46783396153654	-0.108907873439421	0.783454273885348	0.998431161219273
Merged-chr17-45516271-1	chr17	45516171	45516371	+	621.0	f1_balb.idr	intron (NM_001358000, intron 9 of 20)	intron (NM_001358000, intron 9 of 20)	-7163.0	NM_013688	21645.0	Mm.491193	NM_013688	ENSMUSG00000023949	Tcte1	D17Sil1|Tcte-1	t-complex-associated testis expressed 1	protein-coding	-1.56355737717652	-1.81244775989375	-1.82128546162293	-1.82854501295842	-1.83962066705452	-1.81053259306168	-1.81928479966835	-1.82724555674025	-1.28500227969968	0.715751224811686	1
Merged-chr19-44343681-2	chr19	44343578	44343778	+	758.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_183216, intron 5 of 5)	intron (NM_183216, intron 5 of 5)	10352.0	NM_183216	329065.0	Mm.313583	NM_183216	ENSMUSG00000050195	Scd4	ACOD4	stearoyl-coenzyme A desaturase 4	protein-coding	0.360127254217941	0.206916895163211	0.196442383559232	0.188214092706268	1.22393012048272	0.209249617339296	0.198770676767027	1.40451393289657	3.84166285828345	0.0513118313215929	1
Merged-chr4-150265123-2	chr4	150265051	150265251	+	649.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16765.0	NM_001085492	68703.0	Mm.291274	NM_001085492	ENSMUSG00000039852	Rere	1110033A15Rik|AI414665|ARG|ARP|ATN1L|AW742570|Atr2|DNB1|eye<m03Jus>|eyes3|mKIAA0458	arginine glutamic acid dipeptide (RE) repeats	protein-coding	0.82121620945737	1.01038234575652	0.950461442450061	0.215817484889497	0.207017341917683	0.231708708791897	0.223747490027473	0.216899085123335	-4.34550525331751	0.0285461325717498	1
Merged-chr4-126220503-2	chr4	126220403	126220603	+	654.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB3|LINE|L1	-17793.0	NM_146153	230753.0	Mm.29813	NM_146153	ENSMUSG00000043962	Thrap3	9330151F09Rik|B230333E16Rik|Trap150	thyroid hormone receptor associated protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3229727-2	chr4	3229627	3229827	+	999.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44422.0	NM_001167535	100312471.0	Mm.377218	NM_001167535	ENSMUSG00000115466	Vmn1r3	Gm11778	vomeronasal 1 receptor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-118111473-1	chr10	118111373	118111573	+	547.0	f1_c57bl6.idr	Intergenic	Intergenic	-30314.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101260576-3	chr11	101260487	101260687	+	728.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175638)	promoter-TSS (NM_175638)	20.0	NM_175638	69847.0	Mm.23656	NM_175638	ENSMUSG00000035112	Wnk4	2010002J11Rik|Pha2b|Prkwnk4	WNK lysine deficient protein kinase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-80225397-4	chr15	80225269	80225469	+	918.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8711.0	NM_001357659	239555.0	Mm.307163	NM_178719	ENSMUSG00000022412	Mief1	A230016E22|AI452372|Smcr7l	mitochondrial elongation factor 1	protein-coding	3.60247266644843	4.21988106613638	3.82870322286085	3.3066879981881	4.32105010800956	3.98521000811792	3.70450683664245	3.8771805638788	0.315746979449779	0.509302675837037	0.944258808801809
Merged-chr18-53251729-2	chr18	53251629	53251829	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029394, intron 1 of 6)	ID4_|SINE|ID	6067.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141386372-2	chr7	141386272	141386472	+	884.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5788.0	NM_011528	21351.0	Mm.29182	NM_011528	ENSMUSG00000025503	Taldo1	-	transaldolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-77217444-3	chr5	77217332	77217532	+	881.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-5961.0	NM_001289768	69982.0	Mm.46106	NM_183284	ENSMUSG00000053030	Spink2	1700007F22Rik|AV038945|HUSI-II	serine peptidase inhibitor, Kazal type 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-79319983-2	chr12	79319883	79320083	+	603.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 5 of 10)	intron (NM_009014, intron 5 of 10)	22632.0	NM_001252562	19363.0	Mm.341756	NM_009014	ENSMUSG00000059060	Rad51b	AI553500|R51H2|Rad51l1|mREC2	RAD51 paralog B	protein-coding	-1.8418762459921	-1.8125357239735	-1.82140854000656	-1.82869693527674	-1.56059678980999	-1.8106129477253	-1.81939992894326	-1.82739231600805	1.3620893379502	0.699511506488145	1
Merged-chr8-117306796-2	chr8	117306696	117306896	+	742.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	-42374.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-151346938-2	chr1	151346838	151347038	+	682.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039511, intron 1 of 7)	intron (NM_001039511, intron 1 of 7)	2440.0	NM_001039511	117198.0	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-181659804-4	chr2	181659745	181659945	+	914.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11795.0	NM_009236	20672.0	Mm.264904	NM_009236	ENSMUSG00000046470	Sox18	AI385749|Ra|Ragl	SRY (sex determining region Y)-box 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-5614949-6	chr2	5614755	5614955	+	840.361084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290374, intron 1 of 9)	intron (NM_001290374, intron 1 of 9)	61191.0	NM_001290376	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-111119424-4	chr10	111119322	111119522	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45380.0	NM_001003717	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-37325685-4	chr13	37325570	37325770	+	998.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19675.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	0.946586282683679	1.33763384698689	1.06449035091481	0.904410288769786	0.423175352235518	0.452477084937873	0.443047268973936	0.434922391718647	-4.53838183017431	0.00865707286896565	1
Merged-chr4-151842812-4	chr4	151842724	151842924	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081557, intron 1 of 23)	intron (NM_001081557, intron 1 of 23)	18944.0	NM_001081557	100072.0	Mm.318846	NM_001081557	ENSMUSG00000014592	Camta1	1810059M14Rik|2310058O09Rik|AI316882|AW987475|mKIAA0833	calmodulin binding transcription activator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141554477-2	chr7	141554377	141554577	+	606.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	-7703.0	NM_001357068	11772.0	Mm.253090	NM_007459	ENSMUSG00000002957	Ap2a2	2410074K14Rik|AF006990|AW146353|Adtab|C78001|L25	adaptor-related protein complex 2, alpha 2 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-34828887-2	chr1	34828787	34828987	+	651.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001160236, intron 2 of 6)	intron (NM_001160236, intron 2 of 6)	14163.0	NM_174997	214469.0	Mm.120151	NM_174997	ENSMUSG00000037503	Fam168b	Mani|mKIAA4042	family with sequence similarity 168, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-114258420-2	chr6	114258320	114258520	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24215.0	NM_178703	232333.0	Mm.5260	NM_178703	ENSMUSG00000030310	Slc6a1	A730043E01|GABATHG|GABATR|GAT-1|Gabt|Gabt1|Gat1|XT-1|Xtrp1	solute carrier family 6 (neurotransmitter transporter, GABA), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-22155207-2	chr9	22155107	22155307	+	650.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-1639.0	NM_001082532	66268.0	Mm.28924	NM_025457	ENSMUSG00000010607	Pigyl	1810008A14Rik|PIG-Y|Pigy	phosphatidylinositol glycan anchor biosynthesis, class Y-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153076032-5	chr2	153075942	153076142	+	837.966675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145536, intron 6 of 8)	intron (NM_145536, intron 6 of 8)	10087.0	NM_145536	228788.0	Mm.299979	NM_145536	ENSMUSG00000027474	Ccm2l	-	cerebral cavernous malformation 2-like	protein-coding	2.71563651939014	3.20452039444414	2.9669493711889	3.30721434575422	3.97236827555627	4.01927397175133	3.95522530471759	4.20186138431904	1.48262592788464	0.00392141601030188	0.0551484500375692
Merged-chr8-44132332-2	chr8	44132232	44132432	+	626.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-432841.0	NM_001079931	384814.0	Mm.491652	NM_001079931		Gm5347	EG384814	predicted gene 5347	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-40313202-4	chr4	40313097	40313297	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040663)	promoter-TSS (NR_040663)	-35.0	NR_040663	75819.0	Mm.399244	NR_040663	ENSMUSG00000087137	4930509K18Rik	-	RIKEN cDNA 4930509K18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-39415776-4	chr10	39415674	39415874	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122892, intron 2 of 12)	MIR3|SINE|MIR	45975.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-32464611-2	chr12	32464511	32464711	+	613.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus1|LINE|L1	85822.0	NM_001162903	72123.0	Mm.341352	NM_028111	ENSMUSG00000090946	Ccdc71l	2010109K11Rik|AV375874	coiled-coil domain containing 71 like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-22838900-4	chr8	22838791	22838991	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-20648.0	NM_001081149	244349.0	Mm.182776	NM_001081149	ENSMUSG00000031540	Kat6a	1500036M03|9930021N24Rik|MOZ|Myst3|Zfp220	K(lysine) acetyltransferase 6A	protein-coding	3.73061054074347	3.65939849817458	3.69799128200165	3.15803014181587	3.81449990865308	3.39267823122448	4.11055970302395	3.81910685105928	0.340383439708836	0.495798937080127	0.93644329748088
Merged-chr10-84439714-2	chr10	84439614	84439814	+	721.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001004363, intron 1 of 6)	intron (NM_001004363, intron 1 of 6)	757.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-99182678-4	chr11	99182606	99182806	+	952.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27629.0	NM_007719	12775.0	Mm.2932	NM_007719	ENSMUSG00000037944	Ccr7	CC-CKR-7|CCR-7|CD197|Cdw197|Cmkbr7|EBI1|Ebi1h	chemokine (C-C motif) receptor 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106329328-4	chr11	106329210	106329410	+	768.724976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133199, intron 14 of 23)	intron (NM_133199, intron 14 of 23)	-14748.0	NM_001313939	15985.0	Mm.2987	NM_008339	ENSMUSG00000040592	Cd79b	B29|Ig-beta|Igb|Igbeta	CD79B antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-126431159-2	chr4	126431059	126431259	+	851.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1617.0	NM_153402	214150.0	Mm.440915	NM_153402	ENSMUSG00000028842	Ago3	AW048688|C130014L07Rik|Eif2c3	argonaute RISC catalytic subunit 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-25451376-4	chr2	25451259	25451459	+	989.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-5484.0	NM_027085	69454.0	Mm.44194	NM_027085	ENSMUSG00000015093	Clic3	2300003G24Rik	chloride intracellular channel 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-80052360-1	chr11	80052260	80052460	+	548.0	f1_balb.idr	intron (NM_018776, intron 6 of 7)	MTD|LTR|ERVL-MaLR	28631.0	NM_001277106	54394.0	Mm.272093	NM_018776	ENSMUSG00000017561	Crlf3	BB164954|Creme9|Cytor4	cytokine receptor-like factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-145938827-2	chr3	145938727	145938927	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_151446, intron 2 of 3)	intron (NR_151446, intron 2 of 3)	813.0	NR_151446	66421.0	Mm.25137	NM_025555	ENSMUSG00000036873	2410004B18Rik	4930572C24Rik	RIKEN cDNA 2410004B18 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-142462908-2	chr5	142462808	142463008	+	863.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_199068)	TTS (NM_199068)	-1023.0	NM_172725	231855.0	Mm.78250	NM_172725	ENSMUSG00000039623	Ap5z1	C330006K01Rik	adaptor-related protein complex 5, zeta 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-41571705-2	chr10	41571605	41571805	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358562, intron 36 of 47)	B4|SINE|B4	3689.0	NR_045341	70538.0	Mm.399807	NR_045341	ENSMUSG00000091370	5730435O14Rik	-	RIKEN cDNA 5730435O14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-76165108-2	chr14	76165008	76165208	+	929.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54217.0	NM_013745	27275.0	Mm.21138	NM_013745	ENSMUSG00000022009	Nufip1	Nufip	nuclear fragile X mental retardation protein interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-103656151-4	chr2	103656048	103656248	+	845.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178890, intron 1 of 16)	intron (NM_178890, intron 1 of 16)	89838.0	NM_178890	99382.0	Mm.35850	NM_178890	ENSMUSG00000032724	Abtb2	AW539457|BPOZ-2	ankyrin repeat and BTB (POZ) domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-50944926-4	chr9	50944766	50944966	+	859.785706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178710, intron 3 of 15)	Lx7|LINE|L1	64207.0	NM_178710	235344.0	Mm.104932	NM_178710	ENSMUSG00000037112	Sik2	G630080D20Rik|Snf1lk2	salt inducible kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-120258982-2	chr1	120258867	120259067	+	744.875	f0_balb.idr|f1_c57bl6.idr	intron (NM_001085409, intron 2 of 5)	intron (NM_001085409, intron 2 of 5)	6313.0	NM_133186	68428.0	Mm.181033	NM_133186	ENSMUSG00000026389	Steap3	1010001D01Rik|Tsap6|pHyde	STEAP family member 3	protein-coding	0.0529111410133096	-0.205028292635419	0.123615060594741	-0.213786243029001	-0.219186587645412	-0.203915287154386	-0.208879212221107	0.60765510006695	0.872894486071866	0.712768801031893	1
Merged-chr7-126144000-4	chr7	126143885	126144085	+	728.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028816, intron 8 of 23)	intron (NM_028816, intron 8 of 23)	56516.0	NM_001311143	74204.0	Mm.235663	NM_028816	ENSMUSG00000000131	Xpo6	2610005L19Rik|AL022631|C230091E20Rik|R75304|Ranbp20|exp6|mKIAA0370	exportin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96230616-4	chr3	96230507	96230707	+	917.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11B|LTR|ERVK	8520.0	NM_054045	97114.0	Mm.358797	NM_054045	ENSMUSG00000081058	Hist2h3c2	H3-614|H3.2-614|Hist2h3c2-ps|Hist2h3ca1|M32461	histone cluster 2, H3c2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-122261444-4	chr14	122261354	122261554	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029556, intron 1 of 7)	intron (NM_029556, intron 1 of 7)	-27816.0	NR_015532	68245.0	Mm.443285	NR_015532	ENSMUSG00000100585	1700108J01Rik	-	RIKEN cDNA 1700108J01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-49422198-2	chr13	49422098	49422298	+	701.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001276399, intron 1 of 12)	intron (NM_001276399, intron 1 of 12)	584.0	NM_001276399	75678.0	Mm.390586	NM_199056	ENSMUSG00000021385	Ippk	1810043M15Rik|InsP6	inositol 1,3,4,5,6-pentakisphosphate 2-kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-86921107-4	chr8	86920979	86921179	+	994.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35821.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-25199386-2	chr8	25199286	25199486	+	917.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177089, intron 2 of 12)	PB1D10|SINE|Alu	2156.0	NM_199323	320165.0	Mm.308452	NM_177089	ENSMUSG00000065954	Tacc1	4833447E04Rik|AA960202|B230378H13Rik	transforming, acidic coiled-coil containing protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100699203-2	chr11	100699103	100699303	+	731.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_030150, intron 8 of 12)	intron (NM_030150, intron 8 of 12)	5068.0	NM_030150	80861.0	Mm.271830	NM_030150	ENSMUSG00000017830	Dhx58	B430001I08Rik|D11Lgp2e|LPG2|Lgp2|RLR-3	DEXH (Asp-Glu-X-His) box polypeptide 58	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-17385655-4	chr6	17385554	17385754	+	868.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MamRep605|LTR?|LTR?	78014.0	NM_001243064	12389.0	Mm.28278	NM_007616	ENSMUSG00000007655	Cav1	Cav|Cav-1	caveolin 1, caveolae protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-45669045-3	chr5	45668957	45669157	+	858.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019438)	promoter-TSS (NM_019438)	651.0	NR_073433	69788.0	Mm.381492	NR_073433	ENSMUSG00000104986	1600023N17Rik	AV119442	RIKEN cDNA 1600023N17 gene	ncRNA	-1.50561175621786	-1.47331375025452	-1.02203377115094	-1.49110398925286	-1.50334449591826	-1.47119716082604	-1.48086985756939	-1.48966786617048	-2.07776723614574	0.550394407909386	1
Merged-chr18-72021207-1	chr18	72021107	72021307	+	545.0	f1_balb.idr	intron (NM_007831, intron 1 of 28)	Lx|LINE|L1	329862.0	NM_007831	13176.0	Mm.167882	NM_007831	ENSMUSG00000060534	Dcc	C030036D22Rik|Igdcc1	deleted in colorectal carcinoma	protein-coding	-0.391160453472205	-0.376941720461776	0.212141450671306	-0.385179904078712	-0.390269469194869	-0.37589618351836	0.329623885107887	-0.384551758053355	0.365242253643023	0.890834456314612	1
Merged-chr11-103247747-4	chr11	103247646	103247846	+	846.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016896, intron 1 of 15)	intron (NM_016896, intron 1 of 15)	19655.0	NM_016896	53859.0	Mm.158981	NM_016896	ENSMUSG00000020941	Map3k14	Nik|aly	mitogen-activated protein kinase kinase kinase 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115722811-2	chr11	115722711	115722911	+	831.416626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14214.0	NM_008163	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	0.765565177740825	0.317254535169884	0.872950797701357	0.726883102781532	0.298399579279389	0.318739551395646	0.312119698832885	0.840305696438465	-1.38991113268024	0.466330184398791	1
Merged-chr7-27357606-7	chr7	27357479	27357679	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199236, intron 18 of 18)	intron (NM_001199236, intron 18 of 18)	-1571.0	NM_138676	192192.0	Mm.21297	NM_138676	ENSMUSG00000089832	Shkbp1	B930062H15Rik|Sb1	Sh3kbp1 binding protein 1	protein-coding	5.34728991844935	3.94929510839787	4.65779174469004	4.18540142109074	4.21831059168381	4.53337001792144	4.44647431326748	4.31736560306803	-0.356102696002188	0.400206732740412	0.885176145862419
Merged-chr16-30689852-3	chr16	30689764	30689964	+	760.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	90141.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	2.13543663495571	2.14285271225859	2.99986132691873	1.47493199977101	2.25652802256407	1.80357199264425	2.8150393738815	1.22902988837477	-0.322700554962993	0.747505915886702	0.998431161219273
Merged-chr7-127422037-4	chr7	127421924	127422124	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026999)	promoter-TSS (NM_026999)	10.0	NM_026999	69234.0	Mm.20301	NM_026999	ENSMUSG00000045251	Zfp688	2810407K09Rik|AI326029	zinc finger protein 688	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-61689022-2	chr14	61688922	61689122	+	761.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6649.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-32536376-2	chr11	32536262	32536462	+	547.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 1 of 18)	B4A|SINE|B4	3096.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	-0.2656710630734	-0.546262347207394	-0.550841767176131	-0.554392452752248	-0.559436690347387	-0.545233570821315	0.377804451100011	-0.553771041409355	2.05196954387551	0.453853411834089	1
Merged-chr6-35539231-2	chr6	35539131	35539331	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008098, intron 1 of 3)	CpG	657.0	NM_008098	14489.0	Mm.182746	NM_008098	ENSMUSG00000029840	Mtpn	5033418D15Rik|Gcdp|V1	myotrophin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-94098502-4	chr8	94098400	94098600	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_026116, exon 1 of 17)	5' UTR (NM_026116, exon 1 of 17)	311.0	NM_026116	67378.0	Mm.292107	NM_026116	ENSMUSG00000031755	Bbs2	2410125H22Rik|AI447581	Bardet-Biedl syndrome 2 (human)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-39366847-2	chr10	39366747	39366947	+	757.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-2952.0	NM_001122892	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-92477179-4	chr5	92477087	92477287	+	924.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007644, intron 2 of 11)	IAPEz-int|LTR|ERVK	18630.0	NR_105843	102466159.0		NR_105843	ENSMUSG00000099160	Mir6415	Gm27714|mmu-mir-6415	microRNA 6415	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-168473083-3	chr2	168473029	168473229	+	963.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	117236.0	NM_001291178	18019.0	Mm.116802	NM_010899	ENSMUSG00000027544	Nfatc2	AI607462|NF-ATc2|NF-ATp|NFAT1|NFAT1-D|Nfatp	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2	protein-coding	0.637891388616985	1.02821539341224	0.982153469904916	1.05827653496613	0.487004297704761	0.514123841846718	0.505348493763727	1.25777741268948	-0.938015028135797	0.572557306217549	1
Merged-chr1-74331403-2	chr1	74331303	74331503	+	584.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039509, intron 2 of 9)	intron (NM_001039509, intron 2 of 9)	-1207.0	NM_019999	56695.0	Mm.384726	NM_019999	ENSMUSG00000026179	Pnkd	2210013N15Rik|2810403H05Rik|AI854243|Brp17|MNCb-5687|MR-1|Tahccp2	paroxysmal nonkinesiogenic dyskinesia	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-113326540-1	chr11	113326440	113326640	+	876.3333130000001	f1_c57bl6.idr	intron (NM_027216, intron 6 of 9)	intron (NM_027216, intron 6 of 9)	-116871.0	NR_040276	319871.0	Mm.383743	NR_040276	ENSMUSG00000085421	4732490B19Rik	-	RIKEN cDNA 4732490B19 gene	ncRNA	1.96496455601404	1.33505476179785	3.04015359352763	3.247965555119	2.23155199750937	2.6395465359284	1.58139296605178	1.93254735733057	-0.975374506184342	0.304338487643334	0.805978749093158
Merged-chr10-93365115-4	chr10	93365021	93365221	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28910.0	NR_038014	432488.0	Mm.32833	NR_038014		Gm17745	Gm3546	predicted gene, 17745	ncRNA	2.5856154390977	1.51254085797849	2.9060116466635	3.06610228573465	2.93377066818664	1.5225972991141	2.92903877145097	3.21958689563814	0.284119005826394	0.745794028768228	0.998431161219273
Merged-chr17-29085656-2	chr17	29085610	29085810	+	834.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5269.0	NM_001111099	12575.0	Mm.195663	NM_007669	ENSMUSG00000023067	Cdkn1a	CAP20|CDKI|CIP1|Cdkn1|P21|SDI1|Waf1|mda6|p21Cip1|p21WAF	cyclin-dependent kinase inhibitor 1A (P21)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90560487-2	chr2	90560387	90560587	+	660.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	20160.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-13656741-2	chr17	13656641	13656841	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-102647.0	NR_045437	72578.0	Mm.46549	NR_045436	ENSMUSG00000038347	2700054A10Rik	-	RIKEN cDNA 2700054A10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91778144-4	chr16	91778057	91778257	+	866.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110276, intron 1 of 15)	intron (NM_001110276, intron 1 of 15)	48786.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-121746759-2	chr11	121746659	121746859	+	704.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44332.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-34246246-2	chr5	34246146	34246346	+	671.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001015039, intron 1 of 12)	intron (NM_001015039, intron 1 of 12)	42078.0	NM_001015039	231125.0	Mm.113388	NM_001015039	ENSMUSG00000037224	Zfyve28	9630058O20Rik|Gm146|mKIAA1643	zinc finger, FYVE domain containing 28	protein-coding	-0.662826441749988	-1.00555184936033	-1.01675512286785	-1.01992432642343	-0.654846858003193	-1.00312405325568	-1.01421894731451	-1.01959449741028	0.0418081237259606	0.989738874530268	1
Merged-chr3-149725138-2	chr3	149725038	149725238	+	577.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	450401.0	NR_040591	381482.0	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA	-1.53556378612852	-1.50449650903202	-1.51389151005315	-1.37378258695511	-1.25192016443452	-1.50246057311856	-1.51176468775453	-1.52022744460142	0.640753741356348	0.855918148133186	1
Merged-chr3-36319659-3	chr3	36319525	36319725	+	852.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-97350.0	NM_198192	229214.0	Mm.330975	NM_198192	ENSMUSG00000058400	Qrfpr	AQ27|Gpr103|SP9155	pyroglutamylated RFamide peptide receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70804130-4	chr8	70804016	70804216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-4333.0	NM_008353	16161.0	Mm.731	NM_008353	ENSMUSG00000000791	Il12rb1	CD212|IL-12R[b]	interleukin 12 receptor, beta 1	protein-coding	3.73259781871163	3.63149277357443	3.83385017352301	4.04033731253527	3.8205107999565	3.74954386098648	3.8628101211596	4.30900623908894	0.195148810568019	0.672250336740689	0.99440487726309
Merged-chr17-17524584-2	chr17	17524484	17524684	+	772.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	99905.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-40060442-3	chr15	40060332	40060532	+	986.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155348, intron 2 of 2)	intron (NR_155348, intron 2 of 2)	15244.0	NR_155348	102636079.0	Mm.421381	NR_155348	ENSMUSG00000115142	Gm33251	-	predicted gene, 33251	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166565534-2	chr2	166565434	166565634	+	801.25	f1_balb.idr|f1_c57bl6.idr	TTS (NM_177782)	TTS (NM_177782)	1012.0	NR_152154	433503.0	Mm.491336	NR_152154		Gm29679	-	predicted gene, 29679	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-114922079-4	chr5	114921980	114922180	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-1160.0	NM_001359946	231655.0	Mm.95479	NM_145209	ENSMUSG00000041827	Oasl1	7530414C13Rik|oasl9	2'-5' oligoadenylate synthetase-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5803227-1	chr19	5803127	5803327	+	1000.0	f0_balb.idr	promoter-TSS (NR_002847)	promoter-TSS (NR_002847)	-555.0	NR_002847	72289.0	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-17777201-4	chr12	17777091	17777291	+	946.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361645, intron 2 of 4)	intron (NM_001361645, intron 2 of 4)	86382.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-59996857-4	chr5	59996729	59996929	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10827.0	NR_040682	71057.0	Mm.50817	NR_040682	ENSMUSG00000106013	4933402J10Rik	-	RIKEN cDNA 4933402J10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-55023391-1	chr13	55023291	55023491	+	657.0	f1_c57bl6.idr	Intergenic	Intergenic	-2006.0	NM_001033245	212032.0	Mm.267479	NM_001033245	ENSMUSG00000025877	Hk3	HK III|HK-III	hexokinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-24463941-4	chr13	24463821	24464021	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111110, intron 13 of 16)	intron (NM_001111110, intron 13 of 16)	48799.0	NM_001284520	12763.0	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-52166889-3	chr1	52166775	52166975	+	768.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081081, intron 17 of 17)	intron (NM_001081081, intron 17 of 17)	47253.0	NM_001205313	20846.0	Mm.277406	NM_009283	ENSMUSG00000026104	Stat1	2010005J02Rik|AA408197	signal transducer and activator of transcription 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-24699522-4	chr1	24699416	24699616	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026719, intron 3 of 15)	intron (NM_026719, intron 3 of 15)	20598.0	NM_001310483	68421.0	Mm.336563	NM_026719	ENSMUSG00000073725	Lmbrd1	0910001K20Rik|AV347960	LMBR1 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70028529-3	chr14	70028429	70028629	+	789.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028560, intron 4 of 6)	intron (NM_028560, intron 4 of 6)	-48916.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81377123-2	chr10	81377023	81377223	+	952.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_019757, intron 1 of 13)	intron (NM_019757, intron 1 of 13)	1247.0	NM_019757	56371.0	Mm.24202	NM_019757	ENSMUSG00000020235	Fzr1	AW108046|Cdh1|FZR|FZR2|Fyr|HCDH|HCDH1	fizzy and cell division cycle 20 related 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3874942-2	chr12	3874842	3875042	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007872, intron 6 of 22)	B1_Mus1|SINE|Alu	-12698.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-20933642-3	chr1	20933544	20933744	+	966.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355122, intron 2 of 2)	intron (NM_001355122, intron 2 of 2)	15804.0	NM_001355122	74229.0	Mm.40780	NM_028829	ENSMUSG00000025931	Paqr8	1700019B16Rik|3110001D06Rik	progestin and adipoQ receptor family member VIII	protein-coding	4.55034652765384	4.49027980187641	3.60862614165007	3.28893017738505	5.23440429727119	4.73309682753814	5.41887176204039	3.85902998287056	1.0539510072381	0.0243399430147192	0.20534646010695
Merged-chr17-43326874-4	chr17	43326769	43326969	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33562.0	NM_001357332	224792.0	Mm.23478	NM_001081178	ENSMUSG00000056492	Adgrf5	8430401C09Rik|9330185D23|AI528491|Gpr116|mKIAA0758	adhesion G protein-coupled receptor F5	protein-coding	2.87907224497899	3.06735634515371	2.28797582056403	3.29393555125622	2.752396927465	2.79114585123697	1.44718925987085	1.67160784113851	-1.20525279288412	0.154780167658878	0.610069793551649
Merged-chr3-95972391-4	chr3	95972287	95972487	+	950.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13123.0	NR_045872	668224.0	Mm.357766	NR_045872		Gm9054	EG668224	predicted gene 9054	ncRNA	2.83511137146006	2.21254812568057	2.64612185091038	2.57463496409613	2.55800620427829	2.38397594046421	2.15917081152303	2.58734044615117	-0.341246767771317	0.654856961627307	0.988005984240273
Merged-chr12-100079921-3	chr12	100079813	100080013	+	848.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32418.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-28424553-4	chr4	28424433	28424633	+	885.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-388598.0	NM_001290434	13841.0	Mm.257266	NM_010141	ENSMUSG00000028289	Epha7	Cek11|Ebk|Ehk3|Hek11|Mdk1	Eph receptor A7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-41315152-4	chr12	41315066	41315266	+	963.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053122, intron 4 of 6)	intron (NM_053122, intron 4 of 6)	170891.0	NM_001271708	16981.0	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-84755142-2	chr15	84755041	84755241	+	646.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205334, intron 6 of 12)	intron (NM_001205334, intron 6 of 12)	-34875.0	NR_040347	328576.0	Mm.400211	NR_040347	ENSMUSG00000116396	Gm20556	A430075N02	predicted gene, 20556	ncRNA	1.01632120089221	1.46789140990325	1.54639664784214	0.857384720536867	0.839496446175323	1.85494377454116	1.55992249200332	1.61954090871121	0.961298481699394	0.466426481622147	0.922971992343415
Merged-chr9-75410992-3	chr9	75410949	75411149	+	802.509277	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040719, intron 1 of 3)	PB1D10|SINE|Alu	865.0	NR_040719	71274.0	Mm.399152	NR_040719	ENSMUSG00000097021	4933433G15Rik	4921522K19Rik	RIKEN cDNA 4933433G15 gene	ncRNA	-1.50525340993932	-1.47388616340953	-1.48337187766321	-1.34191013583787	-1.3545969562444	-1.47183056956015	-1.48122451987711	-1.34051539875028	0.708891105143862	0.826881111389938	1
Merged-chr6-4054626-4	chr6	4054523	4054723	+	965.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7039.0	NR_131108	78034.0	Mm.243851	NR_131108	ENSMUSG00000107681	4930528H21Rik	Gm43986	RIKEN cDNA 4930528H21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-88119132-4	chr4	88118990	88119190	+	848.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081184, intron 1 of 43)	intron (NM_001081184, intron 1 of 43)	-2950.0	NR_030478	735282.0		NR_030478	ENSMUSG00000070077	Mir491	Mirn491|mir-491|mmu-mir-491	microRNA 491	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-113716361-3	chr7	113716240	113716440	+	696.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49658.0	NM_145584	233744.0	Mm.334160	NM_145584	ENSMUSG00000038156	Spon1	AI666765|AW455831|BC020531|D330035F22Rik|FSP	spondin 1, (f-spondin) extracellular matrix protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101981511-4	chr15	101981409	101981609	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22833.0	NM_031170	16691.0	Mm.358618	NM_031170	ENSMUSG00000049382	Krt8	AA960620|AL022697|AU019895|Card2|EndoA|K8|Krt-2.8|Krt2-8	keratin 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-55384174-2	chr12	55384074	55384274	+	696.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310583)	promoter-TSS (NM_001310583)	-48.0	NM_001310583	26443.0	Mm.30210	NM_011968	ENSMUSG00000021024	Psma6	IOTA	proteasome (prosome, macropain) subunit, alpha type 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-94369892-2	chr16	94369792	94369992	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009441)	promoter-TSS (NM_009441)	438.0	NM_001159619	56176.0	Mm.474449	NM_019543	ENSMUSG00000022940	Pigp	Dcrc|Dscr5	phosphatidylinositol glycan anchor biosynthesis, class P	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-34816322-4	chr8	34816226	34816426	+	986.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176933, intron 1 of 3)	intron (NM_176933, intron 1 of 3)	8716.0	NM_176933	319520.0	Mm.170276	NM_176933	ENSMUSG00000031530	Dusp4	2700078F24Rik|AI844617|BB104621|E130306H24Rik|MKP2	dual specificity phosphatase 4	protein-coding	3.46125255909092	2.10906881308121	3.98447377922082	3.93284199030874	3.77391713122996	3.29569873089925	3.18382421282209	3.44551468842584	-0.166836707998179	0.78535853016703	0.998431161219273
Merged-chr1-185224383-3	chr1	185224286	185224486	+	817.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163754, intron 2 of 34)	L1M4|LINE|L1	-18540.0	NR_034044	100217449.0	Mm.429560	NR_034044	ENSMUSG00000077571	Snora36b	MBI-87	small nucleolar RNA, H/ACA box 36B	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-19656163-4	chr5	19656069	19656269	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170746, intron 1 of 22)	intron (NM_001170746, intron 1 of 22)	-251349.0	NM_001170745	50791.0	Mm.332231	NM_015823	ENSMUSG00000040003	Magi2	AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705	membrane associated guanylate kinase, WW and PDZ domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-97441357-4	chr13	97441202	97441402	+	963.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110432, intron 1 of 1)	MLT1D|LTR|ERVL-MaLR	6332.0	NR_110432	100039691.0	Mm.219358	NR_110430	ENSMUSG00000078952	Lncenc1	Gm11019|Gm2373|Lincenc1|Platr18|linc-Enc1	long non-coding RNA, embryonic stem cells expressed 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-90130948-2	chr7	90130848	90131048	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360867, intron 1 of 19)	intron (NM_001360867, intron 1 of 19)	735.0	NM_001252520	233489.0	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	3.21689837538902	4.17335545533768	3.20431760443466	3.69523295798384	2.73935388968706	4.40868681138486	3.33519559345102	3.57233285302036	0.0256293335004364	0.965100047297487	0.998431161219273
Merged-chr10-51483494-2	chr10	51483394	51483594	+	999.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008147, intron 5 of 8)	intron (NM_008147, intron 5 of 8)	2882.0	NM_001291892	14727.0	Mm.439661	NM_008147	ENSMUSG00000112023	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-89475188-2	chr15	89475088	89475288	+	680.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_009713, exon 3 of 9)	exon (NM_009713, exon 3 of 9)	-1064.0	NR_077233	100532730.0	Mm.461541	NR_077233		C230037L18Rik	-	RIKEN cDNA C230037L18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-74652978-2	chr11	74652878	74653078	+	604.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081158, intron 1 of 25)	intron (NM_001081158, intron 1 of 25)	3483.0	NM_001081158	74148.0	Mm.214574	NM_001081158	ENSMUSG00000020741	Cluh	1300001I01Rik|Kiaa0664|mKIAA0664	clustered mitochondria (cluA/CLU1) homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-88041364-1	chr6	88041264	88041464	+	603.0	f0_balb.idr	intron (NM_001293652, intron 1 of 7)	intron (NM_001293652, intron 1 of 7)	3653.0	NM_001293653	19349.0	Mm.333233	NM_009005	ENSMUSG00000079477	Rab7	Rab7a	RAB7, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128386522-1	chr2	128386422	128386622	+	708.0	f1_c57bl6.idr	intron (NR_028591, intron 1 of 1)	intron (NR_028591, intron 1 of 1)	42829.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	0.259735888574772	0.391032474009342	-0.100187756063222	0.517625900257821	-0.109332252304965	-0.0941601826813041	-0.0991034207468708	-0.103316933245836	-3.84577132758825	0.0892398625051229	1
Merged-chr17-70753290-2	chr17	70753190	70753390	+	805.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347411, intron 9 of 14)	RMER10B|LTR|ERVL	93487.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-36796497-2	chr15	36796397	36796597	+	696.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253806, intron 1 of 5)	RMER1B|Other|Other	432.0	NM_001253806	22631.0	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-50528693-4	chr17	50528596	50528796	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013880, intron 1 of 5)	MTEa|LTR|ERVL-MaLR	19149.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-34113465-4	chr10	34113357	34113557	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	14515.0	NM_175449	215900.0	Mm.34479	NM_175449	ENSMUSG00000046031	Fam26f	A630077B13Rik|Calhm6	family with sequence similarity 26, member F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27274001-2	chr2	27273901	27274101	+	679.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_133905, intron 22 of 29)	intron (NR_133905, intron 22 of 29)	-26698.0	NM_138665	192166.0	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-90936044-2	chr16	90935944	90936144	+	555.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001164483)	TTS (NM_001164483)	-1195.0	NM_026502	68001.0	Mm.45374	NM_026502	ENSMUSG00000022972	1110004E09Rik	-	RIKEN cDNA 1110004E09 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-77436832-2	chr8	77436732	77436932	+	938.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_030113, intron 3 of 22)	intron (NM_030113, intron 3 of 22)	-80224.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-116458981-4	chr6	116458875	116459075	+	915.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009662, intron 1 of 13)	intron (NM_009662, intron 1 of 13)	2203.0	NM_009662	11689.0	Mm.41072	NM_009662	ENSMUSG00000025701	Alox5	5-LO|5-LOX|5LO|5LX|AI850497|F730011J02	arachidonate 5-lipoxygenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-38077286-2	chr15	38077186	38077386	+	824.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001112721, intron 1 of 58)	intron (NM_001112721, intron 1 of 58)	1568.0	NM_001112721	70790.0	Mm.476840	NM_027553	ENSMUSG00000037487	Ubr5	Edd|Edd1	ubiquitin protein ligase E3 component n-recognin 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-32346139-1	chr6	32346039	32346239	+	647.0	f0_balb.idr	intron (NM_175750, intron 3 of 31)	intron (NM_175750, intron 3 of 31)	-165002.0	NR_040277	319849.0	Mm.440860	NR_040277	ENSMUSG00000086763	Plxna4os1	B230378P21Rik	plexin A4, opposite strand 1	ncRNA	0.146089254340848	0.0151923931234165	0.698470572978054	0.00468905402460118	0.150486274569002	0.0165249618565067	0.711217721490431	0.00549018160542442	0.0410419114829647	0.984340077408344	1
Merged-chr4-133311967-1	chr4	133311867	133312067	+	592.0	f1_c57bl6.idr	intron (NM_199306, intron 5 of 15)	intron (NM_199306, intron 5 of 15)	27348.0	NM_199306	230796.0	Mm.226576	NM_199306	ENSMUSG00000037622	Wdtc1	Gm695|adipose|adp	WD and tetratricopeptide repeats 1	protein-coding	0.92221866274821	1.09411654470348	1.33509143165893	0.594442658294566	0.565415854549502	0.429771829115433	0.420583958128446	0.412671229023453	-3.721102960333	0.0314749216880199	1
Merged-chr7-114194483-4	chr7	114194374	114194574	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	60206.0	NM_033370	70349.0	Mm.277024	NM_033370	ENSMUSG00000030754	Copb1	2610019B04Rik	coatomer protein complex, subunit beta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-183963186-1	chr1	183963086	183963286	+	565.0	f1_balb.idr	Intergenic	Intergenic	70812.0	NM_028516	73363.0	Mm.50115	NM_028516	ENSMUSG00000044854	1700056E22Rik	-	RIKEN cDNA 1700056E22 gene	protein-coding	-0.250526932365413	-0.237032552451365	-0.241460506920294	-0.0831862572794973	0.391141436937881	-0.236033469531779	-0.240484481474425	0.286010686960788	2.88788146276683	0.231804475157275	1
Merged-chr10-67549252-7	chr10	67549162	67549362	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001005419)	promoter-TSS (NM_001005419)	-307.0	NM_001005419	211488.0	Mm.297250	NM_001005419	ENSMUSG00000057134	Ado	Gm237	2-aminoethanethiol (cysteamine) dioxygenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-68744515-1	chr3	68744415	68744615	+	704.0	f0_balb.idr	Intergenic	Intergenic	-16980.0	NR_153374	102639225.0	Mm.109095	NR_153374	ENSMUSG00000102936	Gm35584	-	predicted gene, 35584	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76802105-4	chr15	76802011	76802211	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198420, intron 1 of 10)	intron (NM_198420, intron 1 of 10)	16059.0	NM_001168288	223666.0	Mm.322931	NM_198420	ENSMUSG00000033697	Arhgap39	9530053N22|AI843066|D15Wsu169e|Kiaa1688|Porf-2	Rho GTPase activating protein 39	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-78126958-2	chr11	78126858	78127058	+	573.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145430, intron 1 of 2)	Lx8|LINE|L1	32285.0	NM_145430	216971.0	Mm.119387	NM_145430	ENSMUSG00000037750	Fam222b	9630020I17Rik	family with sequence similarity 222, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91930404-5	chr2	91930358	91930558	+	897.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_007699)	TTS (NM_007699)	1244.0	NM_001291481	17242.0	Mm.906	NM_010784	ENSMUSG00000027239	Mdk	MK|Mek	midkine	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-139381869-3	chr2	139381767	139381967	+	918.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-112046.0	NM_001356507	228677.0	Mm.100450	NM_175467	ENSMUSG00000039092	Sptlc3	C130053K05Rik	serine palmitoyltransferase, long chain base subunit 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-79214088-3	chr2	79213984	79214184	+	845.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41342.0	NM_010576	16401.0	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118167645-2	chr11	118167545	118167745	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001112700, intron 12 of 12)	intron (NM_001112700, intron 12 of 12)	-38426.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-11469180-2	chr8	11469080	11469280	+	895.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_011227, intron 1 of 1)	Lx10|LINE|L1	-8749.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-35102728-2	chr5	35102628	35102828	+	830.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013587, intron 1 of 7)	intron (NM_013587, intron 1 of 7)	2969.0	NM_013587	16976.0	Mm.277661	NM_013587	ENSMUSG00000029103	Lrpap1	AA617339|AI790446|AU042172|C77774|HBP44|RAP	low density lipoprotein receptor-related protein associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-21029280-2	chr14	21029159	21029359	+	787.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_009502, exon 19 of 21)	exon (NM_009502, exon 19 of 21)	23183.0	NM_018829	55946.0	Mm.376269	NM_018829	ENSMUSG00000021824	Ap3m1	1200013D09Rik|C78982|R75378	adaptor-related protein complex 3, mu 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-144936125-1	chr7	144936025	144936225	+	581.0	f1_c57bl6.idr	intron (NM_007631, intron 3 of 4)	intron (NM_007631, intron 3 of 4)	3800.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	1.37283205850627	0.485618064634881	1.09050592634366	0.932334735602019	0.984928605232125	0.48769982017472	0.478386705344959	0.470371164307535	-2.03855851804284	0.246596459024102	1
Merged-chr11-70438537-2	chr11	70438437	70438637	+	732.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_106064)	TTS (NR_106064)	282.0	NR_106064	102465670.0		NR_106064	ENSMUSG00000099109	Mir7115	Gm27902|mmu-mir-7115	microRNA 7115	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-63583456-2	chr4	63583356	63583556	+	627.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144905, intron 9 of 9)	intron (NM_144905, intron 9 of 9)	17308.0	NM_001354647	670833.0	Mm.32213	NM_001354647	ENSMUSG00000084782	Gm11213	-	predicted gene 11213	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44305772-4	chr9	44305646	44305846	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172162)	promoter-TSS (NM_172162)	-75.0	NM_172162	102423.0	Mm.24570	NM_172162	ENSMUSG00000032119	Hinfp	AA589481|HiNF-P|Mizf	histone H4 transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-9391373-2	chr14	9391273	9391473	+	775.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-492722.0	NR_030680	100042415.0	Mm.235938	NR_030680	ENSMUSG00000089686	Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-80164647-2	chr12	80164547	80164747	+	623.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-31803.0	NR_033514	69548.0	Mm.269712	NR_033514		2310015A10Rik	5330419I17Rik	RIKEN cDNA 2310015A10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-58948814-4	chr11	58948700	58948900	+	895.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030082)	promoter-TSS (NM_030082)	-111.0	NM_030082	78303.0	Mm.28022	NM_030082	ENSMUSG00000056895	Hist3h2ba	1500011O09Rik|AI413321	histone cluster 3, H2ba	protein-coding	-1.14149542847138	-0.33100028091332	-1.12720875772362	-1.13728867753953	-1.14086750656251	-1.11193125150289	-1.12436624874263	-1.1356767669541	-2.98824766641611	0.369648585513947	1
Merged-chr10-89547988-1	chr10	89547888	89548088	+	569.0	f0_balb.idr	Intergenic	Intergenic	-14366.0	NM_001163504	20186.0	Mm.3095	NM_009108	ENSMUSG00000047638	Nr1h4	AI957360|Fxr|HRR1|RIP14|Rxrip14	nuclear receptor subfamily 1, group H, member 4	protein-coding	0.0940759306763405	-0.0254763224305311	-0.0301097257143713	0.468699491217472	0.0979886934678971	0.16079031243307	-0.0290893947330353	0.475340268258036	0.34988390798922	0.863766440275183	1
Merged-chr19-53267655-2	chr19	53267555	53267755	+	736.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB8|LINE|L1	-12450.0	NR_036590	69319.0	Mm.57452	NR_036590		1700001K23Rik	-	RIKEN cDNA 1700001K23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-62845010-4	chr5	62844894	62845094	+	868.195801	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170705, intron 6 of 8)	intron (NM_001170705, intron 6 of 8)	31171.0	NM_001170705	100322896.0	Mm.479821	NM_001170705	ENSMUSG00000090326	Dthd1	Gm17384	death domain containing 1	protein-coding	2.20397579449204	2.21442758113175	2.50754220946861	2.07571421638686	2.79540714140114	1.64780807143068	3.09610090755855	1.29968940298264	0.394647237161036	0.678108268044971	0.994938406979076
Merged-chr7-127757420-2	chr7	127757320	127757520	+	687.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_172748, intron 7 of 10)	intron (NM_172748, intron 7 of 10)	10645.0	NM_172748	233902.0	Mm.259353	NM_172748	ENSMUSG00000030811	Fbxl19	6030430O11|BC059812|Fbl19	F-box and leucine-rich repeat protein 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-20489908-2	chr13	20489808	20490008	+	867.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_198093, intron 1 of 6)	intron (NM_198093, intron 1 of 6)	16918.0	NM_198093	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123142282-4	chr5	123142179	123142379	+	835.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001040398)	promoter-TSS (NM_001040398)	86.0	NM_001040398	208043.0	Mm.250391	NM_177581	ENSMUSG00000038384	Setd1b	AA516740|BC035291|KMT2G|mKIAA1076	SET domain containing 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30793666-2	chr2	30793566	30793766	+	710.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	8071.0	NM_198000	73598.0	Mm.34166	NM_198000	ENSMUSG00000044320	1700001O22Rik	1700113K14Rik|4930549G18Rik	RIKEN cDNA 1700001O22 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-8925450-4	chr10	8925346	8925546	+	845.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39376.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-184718763-3	chr1	184718666	184718866	+	697.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040627, exon 3 of 3)	non-coding (NR_040627, exon 3 of 3)	6269.0	NR_040627	74971.0	Mm.410816	NR_040627	ENSMUSG00000092578	4930488B22Rik	-	RIKEN cDNA 4930488B22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-34832708-2	chr11	34832608	34832808	+	600.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027411, intron 1 of 11)	Lx5|LINE|L1	933.0	NM_027411	70385.0	Mm.194368	NM_027411	ENSMUSG00000069910	Spdl1	1700018I02Rik|2600001J17Rik|2810049B11Rik|AA409762|Ccdc99	spindle apparatus coiled-coil protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-91088576-2	chr17	91088476	91088676	+	651.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_020252, exon 2 of 23)	exon (NM_020252, exon 2 of 23)	1029.0	NM_001346957	18189.0	Mm.478418	NM_020252	ENSMUSG00000024109	Nrxn1	1700062G21Rik|9330127H16Rik|A230068P09Rik|mKIAA0578	neurexin I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-163939815-3	chr2	163939721	163939921	+	985.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21138.0	NM_183023	241770.0	Mm.330760	NM_183023	ENSMUSG00000035226	Rims4	6530406L02|Rim4	regulating synaptic membrane exocytosis 4	protein-coding	4.33864732680352	4.03517693541541	3.69637908586505	3.7353481754613	3.43782879643476	2.99836527019858	2.89059697712717	4.20000178574587	-0.692493470296805	0.198622164521622	0.682127729065762
Merged-chr8-80951930-2	chr8	80951861	80952061	+	778.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	62945.0	NM_027554	74841.0	Mm.246018	NM_027554	ENSMUSG00000038250	Usp38	4631402N15Rik|4833420O05Rik|AA536967|AU044701|AW544820|mKIAA1891	ubiquitin specific peptidase 38	protein-coding	2.57340936845232	3.0801242543689	2.576922254401	2.89315621142037	3.16626807196208	1.52480195717016	1.75315097736523	2.90806256770765	-0.470958970974733	0.577612897022526	0.96585843058813
Merged-chr11-59578357-3	chr11	59578297	59578497	+	894.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6659.0	NM_001011789	257962.0	Mm.377316	NM_001011789	ENSMUSG00000059610	Olfr222	MOR256-45P	olfactory receptor 222	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-102446995-2	chr11	102446894	102447094	+	832.916687	f1_balb.idr|f1_c57bl6.idr	intron (NM_199200, intron 1 of 7)	intron (NM_199200, intron 1 of 7)	669.0	NM_199200	217219.0	Mm.259924	NM_199200	ENSMUSG00000034685	Fam171a2	-	family with sequence similarity 171, member A2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-84072076-2	chr6	84071976	84072176	+	696.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077694, intron 12 of 54)	intron (NM_001077694, intron 12 of 54)	52690.0	NM_021469	26903.0	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-38718293-4	chr9	38718190	38718390	+	969.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172767)	promoter-TSS (NM_172767)	22.0	NM_172767	67776.0	Mm.290950	NM_172767	ENSMUSG00000023186	Vwa5a	5830475I06Rik|AW552491|BCSC-1|E130119J22|Loh11cr2a	von Willebrand factor A domain containing 5A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-82839460-4	chr1	82839357	82839557	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010472)	promoter-TSS (NM_010472)	-3.0	NM_010472	15463.0	Mm.392569	NM_010472	ENSMUSG00000026159	Agfg1	AU045498|C130049H11Rik|C85612|D730048C23Rik|Hrb|RAB|Rip	ArfGAP with FG repeats 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80757923-3	chr10	80757799	80757999	+	860.577759	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199322, intron 1 of 27)	intron (NM_199322, intron 1 of 27)	2696.0	NM_199322	208266.0	Mm.152371	NM_199322	ENSMUSG00000061589	Dot1l	A630076O07|AW907654|Dot1|KMT4|mDot1	DOT1-like, histone H3 methyltransferase (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53085050-2	chr4	53084950	53085150	+	776.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 13 of 49)	intron (NM_013454, intron 13 of 49)	73170.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-155992511-4	chr4	155992400	155992600	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011341)	promoter-TSS (NM_011341)	178.0	NM_080445	117592.0	Mm.440185	NM_080445	ENSMUSG00000050796	B3galt6	BB129894|GalTII	UDP-Gal:betaGal beta 1,3-galactosyltransferase, polypeptide 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-94715575-2	chr4	94715475	94715675	+	555.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MARNA|DNA|TcMar-Mariner	-23714.0	NM_001290549	21687.0	Mm.14313	NM_013690	ENSMUSG00000006386	Tek	AA517024|Cd202b|Hyk|STK1|Tie-2|Tie2	TEK receptor tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-3769439-3	chr2	3769343	3769543	+	795.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025626, intron 1 of 3)	intron (NM_025626, intron 1 of 3)	55985.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-104789887-4	chr13	104789786	104789986	+	822.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360094, intron 10 of 13)	intron (NM_001360094, intron 10 of 13)	27067.0	NM_026072	67285.0	Mm.235398	NM_026072	ENSMUSG00000021715	Cwc27	3110009E13Rik|NY-CO-10|Sdccag10	CWC27 spliceosome-associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-148573348-4	chr2	148573248	148573448	+	944.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-99267.0	NM_019761	56488.0	Mm.34663	NM_019761	ENSMUSG00000036992	Nxt1	1110001N02Rik	NTF2-related export protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128796669-4	chr2	128796552	128796752	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 18 of 18)	intron (NM_008587, intron 18 of 18)	-21651.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-59969549-3	chr9	59969465	59969665	+	812.116638	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001040426, exon 18 of 18)	3' UTR (NM_001040426, exon 18 of 18)	18271.0	NM_001101600	665389.0	Mm.335214	NM_001101600		Gm7616	EG665389	predicted gene 7616	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-102640012-3	chr5	102639908	102640108	+	645.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029270, intron 2 of 9)	intron (NM_029270, intron 2 of 9)	-128802.0	NM_001286468	231532.0	Mm.440191	NM_029270	ENSMUSG00000057315	Arhgap24	0610025G21Rik	Rho GTPase activating protein 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-40698642-2	chr19	40698542	40698742	+	879.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009848, intron 1 of 9)	intron (NM_009848, intron 1 of 9)	38872.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-85082533-1	chr1	85082433	85082633	+	703.0	f1_balb.idr	Intergenic	Intergenic	27320.0	NM_213615	381287.0	Mm.487565	NM_213615	ENSMUSG00000089844	A530032D15Rik	Gm1888	RIKEN cDNA A530032D15Rik gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101265183-2	chr15	101265083	101265283	+	861.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1663.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-27667949-2	chr15	27667849	27668049	+	788.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198301, intron 1 of 6)	intron (NM_198301, intron 1 of 6)	13593.0	NM_001242424	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80750711-2	chr10	80750611	80750811	+	636.799988	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-4492.0	NM_199322	208266.0	Mm.152371	NM_199322	ENSMUSG00000061589	Dot1l	A630076O07|AW907654|Dot1|KMT4|mDot1	DOT1-like, histone H3 methyltransferase (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-111044689-4	chr5	111044601	111044801	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001267622, intron 2 of 22)	intron (NM_001267622, intron 2 of 22)	40557.0	NR_030482	735278.0		NR_030482	ENSMUSG00000076163	Mir701	Mirn701|mir-701|mmu-mir-701	microRNA 701	ncRNA	3.98410022661121	3.76333211385042	3.43392900983735	4.06990519385629	2.28193106572191	1.42518798437837	1.36228319833782	1.30464081386599	-4.18452497192141	1.38800074401218e-06	8.52554586688984e-05
Merged-chr13-9457202-4	chr13	9457101	9457301	+	938.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081426, intron 1 of 36)	ORR1F|LTR|ERVL-MaLR	180676.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-56799844-1	chr18	56799744	56799944	+	661.0	f0_balb.idr	intron (NM_177115, intron 3 of 4)	L1MC1|LINE|L1	92031.0	NM_010721	16906.0	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167815316-4	chr2	167815158	167815358	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-117069.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118616799-2	chr9	118616699	118616899	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 1 of 27)	intron (NM_133721, intron 1 of 27)	10090.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-28319297-4	chr6	28319193	28319393	+	920.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57692.0	NM_001081678	627049.0	Mm.84441	NM_001081678	ENSMUSG00000039841	Zfp800	AA407452|Znf800	zinc finger protein 800	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-137981592-4	chr3	137981509	137981709	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310753)	promoter-TSS (NM_001310753)	-60.0	NM_011932	26377.0	Mm.254835	NM_011932	ENSMUSG00000028159	Dapp1	Bam32	dual adaptor for phosphotyrosine and 3-phosphoinositides 1	protein-coding	3.8738946703042	3.40781317452961	3.07598310042897	3.85779572165812	3.14436089014203	3.78478318200805	4.15295321306672	2.595539590842	-0.0812270670327945	0.889711945658148	0.998431161219273
Merged-chr13-23685791-6	chr13	23685881	23686081	+	810.105591	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023422, intron 1 of 1)	(TG)n|Simple_repeat|Simple_repeat	1782.0	NM_023422	68024.0	Mm.261676	NM_023422	ENSMUSG00000018102	Hist1h2bc	2610022J01Rik|H2bfs|R74621	histone cluster 1, H2bc	protein-coding	1.5457396467868	1.75552464015967	1.29398531384091	0.893926220661285	0.876198923739479	1.77011266361413	1.30375907655848	1.64621280576489	0.11722131843553	0.927920009870577	0.998431161219273
Merged-chr17-74289215-2	chr17	74289115	74289315	+	583.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133771, intron 1 of 8)	intron (NM_133771, intron 1 of 8)	5648.0	NM_133771	76890.0	Mm.311874	NM_133771	ENSMUSG00000058704	Memo1	0610016J10Rik|D930048L02Rik	mediator of cell motility 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-118404620-4	chr5	118404513	118404713	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F1|LTR|ERVL-MaLR	-156106.0	NM_001347445	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116443044-2	chr11	116442944	116443144	+	804.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001033267, exon 13 of 14)	exon (NM_001033267, exon 13 of 14)	8831.0	NR_003376	664849.0	Mm.258466	NR_003376		Gm7367	EG664849	1110014K08Rik pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-116323673-3	chr7	116323522	116323722	+	680.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10568.0	NM_026533	68052.0	Mm.14798	NM_026533	ENSMUSG00000090862	Rps13	2700063M04Rik	ribosomal protein S13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70220546-2	chr11	70220446	70220646	+	686.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_172371, exon 1 of 4)	exon (NM_172371, exon 1 of 4)	448.0	NM_172371	69309.0	Mm.93266	NM_172371	ENSMUSG00000044367	Slc16a13	1700007D07Rik	solute carrier family 16 (monocarboxylic acid transporters), member 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123572252-2	chr5	123572152	123572352	+	610.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359513, intron 1 of 11)	B1_Mus1|SINE|Alu	763.0	NM_001359513	77573.0	Mm.41372	NM_029929	ENSMUSG00000029434	Vps33a	3830421M04Rik|AI503300|AW048546|AW554476|bf	VPS33A CORVET/HOPS core subunit	protein-coding	-1.84394445732197	-1.66821793943237	-1.67744661740803	-1.83023656412549	-1.84180220054941	-1.81142728226884	-1.82056668285334	-1.82887962050503	-1.53321557181896	0.663006632102188	1
Merged-chr4-86672017-4	chr4	86671937	86672137	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1978.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	3.73081756189633	3.56927474693274	3.53802972864006	4.22121453030708	4.01159032146698	3.15035535929623	3.47656887093372	3.68689242819895	-0.247889982923966	0.627935292716267	0.980912176761026
Merged-chr8-117433983-2	chr8	117433883	117434083	+	685.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_028941, intron 9 of 20)	intron (NM_028941, intron 9 of 20)	-19040.0	NR_106045	102466801.0		NR_106045	ENSMUSG00000099062	Mir7077	Gm27774|mmu-mir-7077	microRNA 7077	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-32775017-1	chr19	32774917	32775117	+	563.0	f0_balb.idr	intron (NM_008960, intron 1 of 8)	B3A|SINE|B2	17440.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-8042877-2	chr9	8042777	8042977	+	781.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358295)	promoter-TSS (NM_001358295)	-2.0	NR_152397	234912.0	Mm.172430	NM_199017	ENSMUSG00000053070	9230110C19Rik	-	RIKEN cDNA 9230110C19 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116684535-2	chr11	116684435	116684635	+	597.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009180, intron 4 of 8)	intron (NM_009180, intron 4 of 8)	9938.0	NR_028570	100216538.0		NR_028570	ENSMUSG00000065094	Snord1a	snR38	small nucleolar RNA, C/D box 1A	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124682430-4	chr6	124682342	124682542	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149320, intron 1 of 11)	intron (NR_149320, intron 1 of 11)	19338.0	NM_145130	14792.0	Mm.273915	NM_145130	ENSMUSG00000004270	Lpcat3	C3f|Grcc3f|Lpcat|Lpeat|Lplat5|Lpsat|Mboat5|Moact5|Oact5|PTG	lysophosphatidylcholine acyltransferase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-173809482-4	chr1	173809388	173809588	+	943.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-42569.0	NM_008329	15951.0	Mm.261270	NM_008329	ENSMUSG00000073489	Ifi204	Ifi16|p204	interferon activated gene 204	protein-coding	1.44505989020021	3.39313142665974	3.6725219488211	2.74064226343529	3.47900613633554	2.65215318678841	3.47696537739539	4.52621024183308	1.01027515208405	0.171286105613845	0.638755914366425
Merged-chr15-34083809-2	chr15	34083710	34083910	+	929.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357925, intron 1 of 10)	intron (NM_001357925, intron 1 of 10)	1091.0	NM_001357925	67154.0	Mm.130883	NM_026002	ENSMUSG00000022255	Mtdh	2610103J23Rik|3D3|3D3/Lyric|AEG-1|AV353288|D8Bwg1112e|Lyric	metadherin	protein-coding	3.4264879596974	3.37135522331807	3.82211130199831	2.30087753107682	2.73525203693258	3.78752051335035	3.37068093511365	2.31388549574008	-0.274304309540477	0.684904156179956	0.996533206832645
Merged-chr8-105714361-4	chr8	105714270	105714470	+	889.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6081.0	NM_027655	71046.0	Mm.280888	NM_027655	ENSMUSG00000013158	4933405L10Rik	-	RIKEN cDNA 4933405L10 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64970085-4	chr5	64969987	64970187	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026667)	promoter-TSS (NM_026667)	12.0	NM_026667	68303.0	Mm.258545	NM_026667	ENSMUSG00000029185	Fam114a1	1190001N04Rik|9130005N14Rik|Noxp20	family with sequence similarity 114, member A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-12206218-3	chr15	12206127	12206327	+	594.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356498, intron 1 of 15)	B1_Mur2|SINE|Alu	1199.0	NM_172958	268783.0	Mm.54460	NM_172958	ENSMUSG00000039458	Mtmr12	3Pap|4932703C11|C730015A02Rik|Pip3ap|mKIAA1682	myotubularin related protein 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-53356964-3	chr9	53356866	53357066	+	863.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176846, intron 4 of 5)	intron (NM_176846, intron 4 of 5)	-27057.0	NM_212445	68304.0	Mm.427519	NM_212445	ENSMUSG00000034487	Kdelc2	2010004J24Rik|4833410J10Rik|AW549401	KDEL (Lys-Asp-Glu-Leu) containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-50528681-4	chr9	50528570	50528770	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011220)	promoter-TSS (NM_011220)	-29.0	NM_011220	19286.0	Mm.35856	NM_011220	ENSMUSG00000032067	Pts	PTPS	6-pyruvoyl-tetrahydropterin synthase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134918181-1	chr6	134918081	134918281	+	738.0	f1_c57bl6.idr	Intergenic	Intergenic	-2220.0	NM_009875	12576.0	Mm.2958	NM_009875	ENSMUSG00000003031	Cdkn1b	AA408329|AI843786|Kip1|p27|p27Kip1	cyclin-dependent kinase inhibitor 1B	protein-coding	1.05270439421131	0.61331555470927	0.589317247914527	0.399797183862079	0.890578456077628	0.415477716328986	1.10844070348385	0.400860310471408	0.295531681531492	0.864930569333531	1
Merged-chr19-25044110-2	chr19	25044005	25044205	+	716.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028785, intron 1 of 47)	intron (NM_028785, intron 1 of 47)	44576.0	NM_028785	76088.0	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	1.11854583783433	1.16618981026548	1.80777333115131	0.553095349198849	1.23604652440928	0.579137149042979	0.566167576743441	0.554887723815956	-1.99097206755106	0.225101360160602	0.717001488400471
Merged-chr8-33660063-1	chr8	33659963	33660163	+	799.0	f1_c57bl6.idr	intron (NM_010344, intron 1 of 12)	intron (NM_010344, intron 1 of 12)	6825.0	NM_010344	14782.0	Mm.283573	NM_010344	ENSMUSG00000031584	Gsr	AI325518|D8Ertd238e|Gr-1|Gr1	glutathione reductase	protein-coding	2.94471832029071	0.952854554567084	0.920297576004077	2.81224251514756	2.00824600198849	0.959956387953117	0.927632722320896	1.75072947012774	-1.75609019213981	0.447371087420401	0.914498173479176
Merged-chr14-60252615-2	chr14	60252515	60252715	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1136.0	NM_001362439	71844.0	Mm.258051	NM_170591	ENSMUSG00000114797	Nupl1	1700017F11Rik|Nup58|mKIAA0410	nucleoporin like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-35163845-4	chr7	35163750	35163950	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22535.0	NM_017394	53896.0	Mm.35567	NM_017394	ENSMUSG00000030495	Slc7a10	AL024237|Asc-1|D7Bwg0847e	solute carrier family 7 (cationic amino acid transporter, y+ system), member 10	protein-coding	2.70278375089682	2.16021640743355	3.41865528471474	3.03135784592391	2.72550803869861	2.1761507604611	3.44421054022181	3.04676771614681	0.0374500208755463	0.958695062528536	0.998431161219273
Merged-chr13-107795131-3	chr13	107795017	107795217	+	581.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 2 of 14)	intron (NM_145456, intron 2 of 14)	94947.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-99122640-3	chr4	99122506	99122706	+	897.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1691.0	NM_026082	67299.0	Mm.260623	NM_026082	ENSMUSG00000028556	Dock7	3110056M06Rik|Gm430	dedicator of cytokinesis 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-45560665-4	chr19	45560583	45560783	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020032)	promoter-TSS (NM_020032)	98.0	NM_172639	226162.0	Mm.21978	NM_172639	ENSMUSG00000041035	Dpcd	Ndac	deleted in primary ciliary dyskinesia	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4168042-2	chr19	4167954	4168154	+	817.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_134148, intron 9 of 9)	B1_Mus2|SINE|Alu	-4671.0	NR_153659	58988.0	Mm.271937	NM_021485	ENSMUSG00000024830	Rps6kb2	S6K-beta-2|S6K2	ribosomal protein S6 kinase, polypeptide 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-88127390-4	chr17	88127298	88127498	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001190356, intron 1 of 1)	L1M4|LINE|L1	1886.0	NM_001190356	225058.0	Mm.312053	NM_001190356		Gm4832	EG225058	predicted gene 4832	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-7850364-2	chr17	7850264	7850464	+	686.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45390.0	NM_001081416	68655.0	Mm.379161	NM_001081416	ENSMUSG00000071984	Fndc1	1110027O12Rik|1110051A18Rik|mKIAA1866	fibronectin type III domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-57570729-4	chr16	57570633	57570833	+	999.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001177871, exon 2 of 2)	exon (NM_001177871, exon 2 of 2)	21491.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-36172452-3	chr8	36172359	36172559	+	835.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16449.0	NR_151736	330738.0	Mm.128075	NR_151736	ENSMUSG00000109704	Gm38414	A230084N10|Gm45568	predicted gene, 38414	ncRNA	2.39318594792072	2.92314400327998	2.64636075395231	3.40517084283245	3.62239118577642	5.11311072093334	4.22700668679617	4.50558951620903	2.25605934138353	5.21742550331483e-05	0.00180226500543487
Merged-chr2-26605078-2	chr2	26604978	26605178	+	584.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026212)	promoter-TSS (NM_026212)	-661.0	NM_026212	67512.0	Mm.24244	NM_026212	ENSMUSG00000026922	Agpat2	2510002J07Rik|AV000834|BSCL|BSCL1|LPAAB|LPAAT-beta	1-acylglycerol-3-phosphate O-acyltransferase 2 (lysophosphatidic acid acyltransferase, beta)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-42762690-2	chr10	42762590	42762790	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359285, intron 1 of 19)	intron (NM_001359285, intron 1 of 19)	1194.0	NM_153055	140740.0	Mm.214344	NM_153055	ENSMUSG00000019802	Sec63	5730478J10Rik|AI649014|AW319215	SEC63-like (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-64084536-4	chr9	64084439	64084639	+	998.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040743, intron 1 of 2)	intron (NR_040743, intron 1 of 2)	3778.0	NR_040743	76814.0	Mm.243771	NR_040743		Scarletltr	2600006L11Rik	Scarletltr, erythroid developmental long intergenic non-protein coding transcript	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-52270614-3	chr18	52270519	52270719	+	978.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-60917.0	NM_026286	67634.0	Mm.179144	NM_026286	ENSMUSG00000024510	Ftmt	4930447C24Rik|FerH|Fth3|MtF	ferritin mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-61701727-2	chr9	61701650	61701850	+	604.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	212760.0	NM_018853	56040.0	Mm.3158	NM_018853	ENSMUSG00000007892	Rplp1	2410042H16Rik|Arpp1|C430017H15Rik	ribosomal protein, large, P1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-67903165-4	chr15	67903073	67903273	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	355683.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-20171240-1	chr13	20171140	20171340	+	802.25	f0_balb.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	80733.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	1.06200306295219	0.924454613428861	1.33662804460116	0.888009208891385	2.05920650430837	1.57191959668525	1.51400155019026	2.31788058613502	3.20409597671007	0.0140175343821062	0.138582888141745
Merged-chr2-13785457-4	chr2	13785359	13785559	+	910.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145838, intron 2 of 7)	intron (NM_145838, intron 2 of 7)	8061.0	NM_145838	241230.0	Mm.330004	NM_145838	ENSMUSG00000003418	St8sia6	1700007J08Rik|AI314453|AI875066|ST8SiaVI|Siat8f	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167505422-4	chr2	167505324	167505524	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153838, intron 1 of 4)	intron (NR_153838, intron 1 of 4)	1981.0	NM_001360930	81018.0	Mm.22225	NM_030743	ENSMUSG00000006418	Rnf114	1110008J21Rik|AI225886|AW549494|Zfp228|Zfp313|Znf228	ring finger protein 114	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-31911229-4	chr18	31911075	31911275	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026006, exon 1 of 1)	exon (NM_026006, exon 1 of 1)	728.0	NM_026006	67158.0	Mm.31537	NM_026006	ENSMUSG00000044982	Sft2d3	2610206C24Rik|AI847965|AW046173	SFT2 domain containing 3	protein-coding	4.29745325340483	3.69221309184433	4.75025450460799	4.22628943807262	5.2256482021543	3.81596820483985	4.26223396026194	2.88105083416577	0.0345508873707967	0.948329167064567	0.998431161219273
Merged-chr10-43042952-4	chr10	43042848	43043048	+	999.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175407, intron 5 of 6)	LTR40A1|LTR|ERVL	-51786.0	NR_153349	327749.0	Mm.428887	NR_153349		Gm5079	C230040G06	predicted gene 5079	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-21176121-4	chr19	21176018	21176218	+	801.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	71408.0	NR_126458	75354.0	Mm.243873	NR_126458		4930554I06Rik	-	RIKEN cDNA 4930554I06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167685748-2	chr2	167685648	167685848	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3167.0	NM_009883	12608.0	Mm.439656	NM_009883	ENSMUSG00000056501	Cebpb	C/EBPbeta|CRP2|IL-6DBP|LAP|LIP|NF-IL6|NF-M|Nfil6	CCAAT/enhancer binding protein (C/EBP), beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-121545143-2	chr10	121545043	121545243	+	599.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41651.0	NM_019786	56480.0	Mm.34580	NM_019786	ENSMUSG00000020115	Tbk1	1200008B05Rik|AI462036|AW048562	TANK-binding kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-82526052-4	chr18	82525971	82526171	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025245, intron 3 of 3)	intron (NM_001025245, intron 3 of 3)	-28392.0	NM_001025258	17196.0	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-31194111-4	chr5	31194038	31194238	+	938.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001127355)	promoter-TSS (NM_001127355)	834.0	NM_153680	266781.0	Mm.6118	NM_153680	ENSMUSG00000029146	Snx17	5830447M19Rik|AI790646|D5Ertd260e|b2b1625.1Clo|mKIAA0064	sorting nexin 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-134704396-4	chr4	134704292	134704492	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207237)	promoter-TSS (NM_207237)	-102.0	NM_207237	230815.0	Mm.18905	NM_207237	ENSMUSG00000037306	Man1c1	AI593348	mannosidase, alpha, class 1C, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-45431645-2	chr17	45431545	45431745	+	577.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_152810, intron 1 of 15)	intron (NM_152810, intron 1 of 15)	2062.0	NM_152810	71702.0	Mm.28270	NM_152810	ENSMUSG00000023932	Cdc5l	1200002I02Rik|AA408004|PCDC5RP	cell division cycle 5-like (S. pombe)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-21832143-4	chr13	21832034	21832234	+	964.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175657).2	promoter-TSS (NM_175657).2	24.0	NM_175657	319161.0	Mm.261664	NM_175657	ENSMUSG00000069305	Hist1h4n	-	histone cluster 1, H4n	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-91704971-2	chr6	91704871	91705071	+	719.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009320, intron 2 of 14)	intron (NM_009320, intron 2 of 14)	20904.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-108380458-2	chr3	108380358	108380558	+	557.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_026831)	TTS (NM_026831)	3283.0	NR_040560	100038453.0	Mm.214328	NR_040560	ENSMUSG00000074281	Gm12522	-	predicted gene 12522	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-66742743-4	chr15	66742645	66742845	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009375, intron 34 of 47)	intron (NM_009375, intron 34 of 47)	71975.0	NM_009375	21819.0	Mm.441333	NM_009375	ENSMUSG00000053469	Tg	Tgn|cog	thyroglobulin	protein-coding	4.32459678945543	4.15509299073806	4.64493757666432	3.71479955184433	3.48114557324977	3.4335584105172	3.92131264165067	2.96746196648406	-1.07071123977063	0.0290762698794989	0.231952849743503
Merged-chr2-150672169-4	chr2	150672070	150672270	+	895.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3930.0	NM_080575	68738.0	Mm.7044	NM_080575	ENSMUSG00000027452	Acss1	1110032O15Rik|AI788978|Acas2|Acas2l|AceCS2	acyl-CoA synthetase short-chain family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88408855-2	chr3	88408755	88408955	+	819.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025928, intron 1 of 4)	intron (NM_025928, intron 1 of 4)	1542.0	NM_001310605	67037.0	Mm.36715	NM_025928	ENSMUSG00000028066	Pmf1	2600009M07Rik|AL033286|AW060657	polyamine-modulated factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64318961-2	chr5	64318860	64319060	+	618.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 13 of 18)	B4A|SINE|B4	88603.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	-2.18243820993087	-2.15538464093652	-2.16356586349869	-2.17028616330028	-2.18053909940952	-2.15361173587851	-2.16171381403791	-2.0403552525549	0.759018020146679	0.829933115115583	1
Merged-chr14-109641844-1	chr14	109641744	109641944	+	570.0	f0_balb.idr	Intergenic	Intergenic	-727605.0	NM_199065	76965.0	Mm.257268	NM_199065	ENSMUSG00000075478	Slitrk1	3200001I04Rik	SLIT and NTRK-like family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-92850196-2	chr1	92850096	92850296	+	775.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029559)	promoter-TSS (NR_029559)	-182.0	NR_029559	387167.0		NR_029559	ENSMUSG00000065470	Mir149	Mirn149|mir-149|mmu-mir-149	microRNA 149	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-116445039-2	chr7	116444939	116445139	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1581.0	NM_011083	18704.0	Mm.3810	NM_011083	ENSMUSG00000030660	Pik3c2a	Cpk-m|PI3KC2	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-35308291-3	chr2	35308195	35308395	+	939.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_146120)	TTS (NM_146120)	25915.0	NM_146120	227753.0	Mm.443	NM_146120	ENSMUSG00000026879	Gsn	ADF	gelsolin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-101170562-2	chr4	101170462	101170662	+	868.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146145, intron 11 of 24)	intron (NM_146145, intron 11 of 24)	94720.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-26536545-2	chr2	26536445	26536645	+	592.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32618.0	NR_132655	102639736.0		NR_132655		Gm35978	-	predicted gene, 35978	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122379965-4	chr5	122379871	122380071	+	952.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024216, intron 3 of 7)	intron (NM_024216, intron 3 of 7)	7463.0	NM_024216	68080.0	Mm.266328	NM_024216	ENSMUSG00000029464	Gpn3	A930018B01Rik|Atpbd1c|D5Ertd708e	GPN-loop GTPase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-10417501-3	chr16	10417406	10417606	+	889.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011955, intron 3 of 10)	intron (NM_011955, intron 3 of 10)	5568.0	NM_011955	26425.0	Mm.29037	NM_011955	ENSMUSG00000022503	Nubp1	-	nucleotide binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-33240604-4	chr14	33240504	33240704	+	927.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153800, intron 2 of 10)	intron (NM_153800, intron 2 of 10)	23781.0	NM_153800	239027.0	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-37808603-2	chr18	37808503	37808703	+	606.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_033581, exon 1 of 4)	exon (NM_033581, exon 1 of 4)	2193.0	NM_033581	93706.0	Mm.247203	NM_033581	ENSMUSG00000102918	Pcdhgc3	PC43|Pcdh2	protocadherin gamma subfamily C, 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-128643676-4	chr1	128643547	128643747	+	952.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51348.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	1.96202949147944	1.12279242209058	1.92933434133129	1.62530556560003	1.68081932119534	1.12741660179736	1.94506427983289	2.25236812561427	0.339684846944572	0.766074205341346	0.998431161219273
Merged-chr14-65147211-3	chr14	65147100	65147300	+	624.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-49094.0	NM_001360385	54616.0	Mm.103748	NM_018788	ENSMUSG00000021978	Extl3	2900009G18Rik|AU040105|Ext1l|mKIAA0519	exostoses (multiple)-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124054327-2	chr5	124054227	124054427	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-22067.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-78360456-7	chr11	78360368	78360568	+	819.428589	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008238, intron 8 of 8)	intron (NM_008238, intron 8 of 8)	13758.0	NM_001313987	22248.0	Mm.284811	NM_011676	ENSMUSG00000002058	Unc119	D11Bhm52|HRG4|MRG4|Rg4|Rtg4|Unc119h	unc-119 lipid binding chaperone	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-20827680-1	chr10	20827580	20827780	+	580.0	f0_balb.idr	Intergenic	L2|LINE|L2	-102602.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70719298-2	chr8	70719188	70719388	+	794.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001195253, intron 1 of 3)	intron (NM_001195253, intron 1 of 3)	745.0	NM_001195253	100502950.0	Mm.52981	NM_001195253	ENSMUSG00000095026	Gm3336	100041434|2410018E23Rik	predicted gene 3336	protein-coding	2.58670606006832	2.32625154597512	1.9807845299094	1.92981911009649	2.38397855559141	1.6758650570855	2.26739715339367	2.41017223034877	-0.0419990221095581	0.961812925014526	0.998431161219273
Merged-chr18-34961720-1	chr18	34961620	34961820	+	569.0	f1_c57bl6.idr	Intergenic	RMER16-int|LTR|ERVK	-7369.0	NM_010481	15526.0	Mm.209419	NM_010481	ENSMUSG00000024359	Hspa9	74kDa|Csa|Grp75|Hsc74|Hsp74|Hsp74a|Hspa9a|Mortalin|Mot-2|Mot2|Mthsp70|Pbp74	heat shock protein 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-77941675-2	chr18	77941575	77941775	+	693.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001195633, intron 1 of 43)	intron (NM_001195633, intron 1 of 43)	3208.0	NM_001195633	100502841.0	Mm.297782	NM_001195633	ENSMUSG00000039840	Epg5	4732475F16|5430411K18Rik|AI661957|AW456499|mKIAA1632	ectopic P-granules autophagy protein 5 homolog (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-79461236-2	chr11	79461136	79461336	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010897, intron 30 of 57)	C-rich|Low_complexity|Low_complexity	22795.0	NR_045305	104522.0	Mm.436987	NR_045305	ENSMUSG00000091523	AU040972	AU040954	expressed sequence AU040972	ncRNA	1.66265790263988	1.85916229904599	1.34015424169049	1.95986719375818	1.55890296187607	1.87284044297282	1.34778768074136	1.97010524724918	-0.0486234601399239	0.963262086818513	0.998431161219273
Merged-chr11-96860752-4	chr11	96860654	96860854	+	888.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019877, intron 8 of 8)	intron (NM_019877, intron 8 of 8)	10361.0	NR_029562	387170.0		NR_029562	ENSMUSG00000065515	Mir152	Mirn152|mir-152|mmu-mir-152	microRNA 152	ncRNA	2.29822561028005	2.96774114323347	2.37023651436321	2.79085725080989	1.78676825061118	2.16936699049333	2.09998913130399	2.72307936711273	-0.857198218927342	0.293285155231059	0.797649214211793
Merged-chr15-102463991-2	chr15	102463891	102464091	+	739.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4821.0	NM_025385	66151.0	Mm.393955	NM_025385	ENSMUSG00000023048	Prr13	1110020C13Rik|2010324E22Rik	proline rich 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97438068-2	chr11	97437968	97438168	+	887.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12092.0	NM_021493	58996.0	Mm.394118	NM_021493	ENSMUSG00000049807	Arhgap23	A330041B18Rik	Rho GTPase activating protein 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101975135-2	chr11	101975035	101975235	+	987.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028207, intron 2 of 2)	intron (NM_028207, intron 2 of 2)	-8120.0	NM_024449	74499.0	Mm.265602	NM_024449	ENSMUSG00000001494	Sost	5430411E23Rik	sclerostin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-140953358-4	chr7	140953266	140953466	+	898.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	2595.0	NM_030694	80876.0	Mm.379266	NM_030694	ENSMUSG00000060591	Ifitm2	DSPA2c|Ifitm3l|fragilis3|mil-3	interferon induced transmembrane protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-85689511-3	chr11	85689408	85689608	+	926.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138681, intron 24 of 25)	intron (NM_138681, intron 24 of 25)	30236.0	NR_045875	71489.0	Mm.442482	NR_045875	ENSMUSG00000086199	Bcas3os1	8430403D17Rik	breast carcinoma amplified sequence 3, opposite strand 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-44422347-6	chr19	44422236	44422436	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14627.0	NM_009127	20249.0	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-33235841-3	chr14	33235736	33235936	+	847.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153800, intron 2 of 10)	intron (NM_153800, intron 2 of 10)	19013.0	NM_153800	239027.0	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117107671-2	chr8	117107571	117107771	+	759.400024	f1_balb.idr|f1_c57bl6.idr	intron (NM_021486, intron 3 of 10)	intron (NM_021486, intron 3 of 10)	11806.0	NM_001163028	63857.0	Mm.174133	NM_021486	ENSMUSG00000031845	Bco1	Bcdo|Bcdo1|Bcmo1|CMO1|Cmoi|beta-CD|betaCMOOX	beta-carotene oxygenase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-29694149-4	chr6	29694060	29694260	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146173)	promoter-TSS (NM_146173)	-54.0	NM_001301407	232670.0	Mm.225289	NM_146173	ENSMUSG00000001763	Tspan33	1300010A20Rik|Pen	tetraspanin 33	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-86160850-2	chr17	86160750	86160950	+	643.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6935.0	NM_011104	18754.0	Mm.24614	NM_011104	ENSMUSG00000045038	Prkce	5830406C15Rik|PKC[e]|PKCepsilon|Pkce|R75156	protein kinase C, epsilon	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3712191-4	chr4	3712126	3712326	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 1 of 12)	intron (NM_001111096, intron 1 of 12)	-2738.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139457562-4	chr5	139457384	139457584	+	926.275024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028469, intron 1 of 4)	LTR106_Mam|LTR|LTR	3050.0	NM_028469	73212.0	Mm.84294	NM_028469	ENSMUSG00000053553	3110082I17Rik	AW411904	RIKEN cDNA 3110082I17 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-21857512-1	chr14	21857412	21857612	+	1000.0	f1_c57bl6.idr	TTS (NM_176925)	TTS (NM_176925)	-8602.0	NM_026965	69156.0	Mm.11827	NM_026965	ENSMUSG00000021773	Comtd1	1810030M08Rik|MT773	catechol-O-methyltransferase domain containing 1	protein-coding	-1.32440223303897	-1.29339468673833	-0.717877708899544	-1.31276353204239	-1.32392690786997	-1.29109028300231	-1.30162128075409	-1.31119997543009	-2.49510383040271	0.470258445164311	1
Merged-chr12-52024682-3	chr12	52024582	52024782	+	705.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008159, intron 1 of 1)	intron (NM_008159, intron 1 of 1)	3381.0	NM_008159	14762.0	Mm.12890	NM_008159	ENSMUSG00000035148	Gpr33	-	G protein-coupled receptor 33	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-23708034-2	chr13	23707934	23708134	+	626.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_010424, exon 2 of 6)	exon (NM_010424, exon 2 of 6)	2820.0	NM_001347493	15216.0	Mm.2681	NM_010424	ENSMUSG00000006611	Hfe	MR2	hemochromatosis	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-137947038-4	chr3	137946914	137947114	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011932, intron 4 of 8)	intron (NM_011932, intron 4 of 8)	28459.0	NM_019920	56692.0	Mm.331392	NM_019920	ENSMUSG00000091512	Lamtor3	AW556229|Map2k1ip1|Mapbp|Mapksp1|Mp1	late endosomal/lysosomal adaptor, MAPK and MTOR activator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166481750-2	chr2	166481650	166481850	+	825.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34299.0	NR_015558	319684.0	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-11808963-4	chr11	11808856	11809056	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163359)	promoter-TSS (NM_001163359)	6.0	NM_021891	60530.0	Mm.236114	NM_021891	ENSMUSG00000035455	Fignl1	-	fidgetin-like 1	protein-coding	8.28507880840812	8.31200682729889	8.18809429757598	8.14849027843502	7.79477420753279	7.71744143746885	7.58041740446663	7.78106582404283	-0.527824506678732	2.24513267651736e-05	0.000891957014995209
Merged-chr17-47703116-2	chr17	47703016	47703216	+	989.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_144939, exon 7 of 7)	exon (NM_144939, exon 7 of 7)	-1120.0	NR_045913	100126242.0	Mm.392746	NR_045912	ENSMUSG00000086930	Frs3os	4930417B13Rik|Gm14873	fibroblast growth factor receptor substrate 3, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-37592274-4	chr13	37592177	37592377	+	913.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-233761.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-49111577-3	chr9	49111513	49111713	+	850.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359460, intron 7 of 12)	intron (NM_001359460, intron 7 of 12)	8834.0	NM_030709	80893.0	Mm.72799	NM_030709	ENSMUSG00000032268	Tmprss5	spinesin	transmembrane protease, serine 5 (spinesin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-35907622-4	chr16	35907538	35907738	+	977.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30832.0	NM_030253	80285.0	Mm.49074	NM_030253	ENSMUSG00000022906	Parp9	ARTD9|AW214463|BC003281|Bagl|Bal|PARP-9	poly (ADP-ribose) polymerase family, member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-60698988-3	chr11	60698882	60699082	+	891.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159405)	promoter-TSS (NM_001159405)	-708.0	NM_001159405	16897.0	Mm.285453	NM_008502	ENSMUSG00000020536	Llgl1	AI325176|Lgl1|Llglh|Mgl1	LLGL1 scribble cell polarity complex component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-126476287-4	chr2	126476194	126476394	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359975, intron 3 of 27)	intron (NM_001359975, intron 3 of 27)	15259.0	NM_001080944	241633.0	Mm.222235	NM_001080944	ENSMUSG00000060131	Atp8b4	Im	ATPase, class I, type 8B, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-3024388-6	chr9	3024259	3024459	+	824.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GSAT_MM|Satellite|Satellite	14384.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-98956466-4	chr13	98956385	98956585	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D11|SINE|Alu	28080.0	NM_027064	69382.0	Mm.45466	NM_027064	ENSMUSG00000045022	1700024P04Rik	H2bl1|Subh2bv	RIKEN cDNA 1700024P04 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-134854506-2	chr1	134854406	134854606	+	592.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081307, intron 13 of 23)	intron (NM_001081307, intron 13 of 23)	-50785.0	NR_015606	329251.0	Mm.188709	NM_001081307	ENSMUSG00000073557	Ppp1r12b	1810037O03Rik|9530009M10Rik|AI132431|Mypt2	protein phosphatase 1, regulatory (inhibitor) subunit 12B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133200214-7	chr4	133200154	133200354	+	790.069031	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4599.0	NR_105984	102466215.0		NR_105984	ENSMUSG00000099202	Mir7017	Gm27945|mmu-mir-7017	microRNA 7017	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-144896519-4	chr4	144896363	144896563	+	858.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357274, intron 2 of 6)	intron (NM_001357274, intron 2 of 6)	3326.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-156967325-6	chr2	156967224	156967424	+	819.861084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355394, intron 1 of 15)	intron (NM_001355394, intron 1 of 15)	24379.0	NM_001355391	29812.0	Mm.279256	NM_013865	ENSMUSG00000027634	Ndrg3	4833415O14Rik|AI747193|Ndr3	N-myc downstream regulated gene 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-80127416-4	chr12	80127313	80127513	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033514, intron 2 of 2)	intron (NR_033514, intron 2 of 2)	5431.0	NR_033514	69548.0	Mm.269712	NR_033514		2310015A10Rik	5330419I17Rik	RIKEN cDNA 2310015A10 gene	ncRNA	4.89946014620833	4.96510108454274	4.76697788809173	4.59541365972412	4.80418540104208	5.5110535745057	5.72375240067365	5.15357001224698	0.61636633300245	0.0601857808780654	0.36309990136288
Merged-chr7-19302691-4	chr7	19302579	19302779	+	923.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008036)	TTS (NM_008036)	7366.0	NM_008036	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-63267406-2	chr4	63267306	63267506	+	609.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025685, intron 14 of 60)	L2b|LINE|L2	10555.0	NR_030477	735262.0		NR_030477	ENSMUSG00000070102	Mir455	Mirn455|mir-455|mmu-mir-455	microRNA 455	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-16065517-2	chr19	16065417	16065617	+	594.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-67314.0	NM_008139	14682.0	Mm.439701	NM_008139	ENSMUSG00000024639	Gnaq	1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI	guanine nucleotide binding protein, alpha q polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55792094-4	chr19	55792012	55792212	+	977.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001331146, intron 4 of 14)	intron (NM_001331146, intron 4 of 14)	50302.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98204236-2	chr11	98204136	98204336	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001109626, exon 1 of 14)	exon (NM_001109626, exon 1 of 14)	931.0	NM_001109626	69131.0	Mm.260516	NM_026952	ENSMUSG00000003119	Cdk12	1810022J16Rik|AI646528|Crk7|Crkrs|D11Ertd752e|Pksc	cyclin-dependent kinase 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-148492395-4	chr2	148492268	148492468	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48833.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-34132211-2	chr7	34132111	34132311	+	809.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_207212, intron 1 of 7)	PB1D7|SINE|Alu	1057.0	NM_207212	101543.0	Mm.422738	NM_207212	ENSMUSG00000036459	Wtip	-	WT1-interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133011470-4	chr4	133011351	133011551	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146155)	promoter-TSS (NM_146155)	-55.0	NM_146155	230793.0	Mm.31816	NM_146155	ENSMUSG00000037692	Ahdc1	D030015G18Rik	AT hook, DNA binding motif, containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41442623-6	chr19	41442528	41442728	+	998.2333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57558.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-83137937-4	chr17	83137838	83138038	+	845.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59713.0	NR_045094	100503434.0	Mm.187281	NR_045094		Gm19689	-	predicted gene, 19689	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-105399237-11	chr2	105399267	105399467	+	925.8485109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009037)	promoter-TSS (NM_009037)	-48.0	NM_009037	19672.0	Mm.4876	NM_009037	ENSMUSG00000005973	Rcn1	Rcn	reticulocalbin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-40317008-4	chr10	40316918	40317118	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT-int|LTR|ERVL-MaLR	-14830.0	NM_009665	11702.0	Mm.253533	NM_009665	ENSMUSG00000075232	Amd1	AdoMetDC|Amd-1|SAMDC|SAMDC 1|adoMetDC1	S-adenosylmethionine decarboxylase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-99244227-2	chr11	99244127	99244327	+	917.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361584)	promoter-TSS (NM_001361584)	-80.0	NM_172946	268481.0	Mm.133193	NM_172946	ENSMUSG00000035849	Krt222	6330509G02Rik	keratin 222	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-6033329-2	chr11	6033229	6033429	+	875.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001174054, intron 1 of 20)	intron (NM_001174054, intron 1 of 20)	32419.0	NM_001174054	12323.0	Mm.439733	NM_007595	ENSMUSG00000057897	Camk2b	CaMKII	calcium/calmodulin-dependent protein kinase II, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-59462270-4	chr2	59462152	59462352	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT2B2|LTR|ERVL	-22401.0	NM_029723	76747.0	Mm.275769	NM_029723	ENSMUSG00000026989	Dapl1	2310032F03Rik|EEDA	death associated protein-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-77216170-4	chr11	77216082	77216282	+	891.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177710)	promoter-TSS (NM_177710)	-243.0	NM_177710	237860.0	Mm.440381	NM_177710	ENSMUSG00000037926	Ssh2	SSH-2|SSH-2L|mSSH-2L	slingshot protein phosphatase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35837054-4	chr17	35836879	35837079	+	976.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011655, intron 1 of 3)	intron (NM_011655, intron 1 of 3)	1322.0	NM_011655	22154.0	Mm.273538	NM_011655	ENSMUSG00000001525	Tubb5	AA408537|AI596182|B130022C14Rik|M(beta)5	tubulin, beta 5 class I	protein-coding	1.48106507651728	1.28187066864627	1.50767119524168	0.863766095225572	1.49431140321017	1.29104166874593	0.877169801124264	1.67341172555694	0.236155686122776	0.857947828176245	0.998431161219273
Merged-chr12-85348524-4	chr12	85348427	85348627	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026775, intron 3 of 4)	intron (NM_026775, intron 3 of 4)	-9165.0	NM_145138	217718.0	Mm.29071	NM_145138	ENSMUSG00000034290	Nek9	C130021H08Rik	NIMA (never in mitosis gene a)-related expressed kinase 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-150663900-2	chr5	150663800	150664000	+	630.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001362416, intron 1 of 7)	RLTR1D|LTR|ERV1	1712.0	NM_001362416	381695.0	Mm.246934	NM_201369	ENSMUSG00000029655	N4bp2l2	2700092H06Rik|Gm38758|zag1	NEDD4 binding protein 2-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33481441-2	chr16	33481341	33481541	+	644.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358570, intron 7 of 8)	intron (NM_001358570, intron 7 of 8)	-36888.0	NM_134251	171286.0	Mm.35253	NM_134251	ENSMUSG00000035506	Slc12a8	CCC9|E330020C02Rik	solute carrier family 12 (potassium/chloride transporters), member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-145801546-2	chr2	145801446	145801646	+	689.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028724, intron 2 of 12)	intron (NM_028724, intron 2 of 12)	15430.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-72975879-2	chr2	72975779	72975979	+	700.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001018042, intron 3 of 6)	intron (NM_001018042, intron 3 of 6)	3402.0	NM_001098425	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-106232628-3	chr1	106232526	106232726	+	949.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133821, intron 1 of 16)	intron (NM_133821, intron 1 of 16)	60757.0	NM_133821	98432.0	Mm.24115	NM_133821	ENSMUSG00000044340	Phlpp1	AI836256|Phlpp|Plekhe1|SCOP|mKIAA0606	PH domain and leucine rich repeat protein phosphatase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69059630-4	chr11	69059522	69059722	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028005)	promoter-TSS (NM_028005)	-153.0	NM_028005	71923.0	Mm.340257	NM_028005	ENSMUSG00000045176	Borcs6	2310047M10Rik	BLOC-1 related complex subunit 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-151708923-3	chr1	151708782	151708982	+	745.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022018, intron 11 of 13)	MIR3|SINE|MIR	45845.0	NR_151474	102640772.0		NR_151473	ENSMUSG00000100594	2810414N06Rik	-	RIKEN cDNA 2810414N06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-10495155-4	chr16	10495047	10495247	+	911.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302619, intron 2 of 19)	RLTR35B_MM|LTR|ERVL	5366.0	NM_001243761	12265.0	Mm.249560	NM_007575	ENSMUSG00000022504	Ciita	C2ta|EG669998|Gm9475|Mhc2ta	class II transactivator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-105125800-2	chr11	105125700	105125900	+	860.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172567)	promoter-TSS (NM_172567)	-625.0	NM_172567	52686.0	Mm.270091	NM_172567	ENSMUSG00000020691	Mettl2	2810438F06Rik|AW493404|C130031G21Rik|D11Ertd768e|METL|PSENIP1	methyltransferase like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-8610072-4	chr11	8609955	8610155	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 2 of 30)	intron (NM_001083587, intron 2 of 30)	54480.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-66144963-4	chr2	66144881	66145081	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20188.0	NM_015736	14425.0	Mm.439760	NM_015736	ENSMUSG00000026994	Galnt3	-	polypeptide N-acetylgalactosaminyltransferase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-11411904-3	chr8	11411825	11412025	+	733.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009932, intron 16 of 47)	intron (NM_009932, intron 16 of 47)	-66004.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-61477655-4	chr18	61477568	61477768	+	788.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045419, intron 1 of 3)	intron (NR_045419, intron 1 of 3)	6939.0	NR_045419	442846.0	Mm.417648	NR_045419		A530050N04Rik	-	RIKEN cDNA A530050N04 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89784361-2	chr3	89784261	89784461	+	595.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_027315)	TTS (NM_027315)	10752.0	NM_027315	70093.0	Mm.41438	NM_027315	ENSMUSG00000042572	Ube2q1	1110002C01Rik|2310012M18Rik|AI854014|Gtap|NICE-5|PRO3094|Ube2q	ubiquitin-conjugating enzyme E2Q family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-32118079-3	chr9	32117981	32118181	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195632, intron 1 of 21)	intron (NM_001195632, intron 1 of 21)	1945.0	NM_001195632	330914.0	Mm.46683	NM_177379	ENSMUSG00000041444	Arhgap32	3426406O18Rik|Gc-gap|Grit|Px-rics|Rics|mKIAA0712|p200Rhogap|p250Gap	Rho GTPase activating protein 32	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-13577121-2	chr12	13577021	13577221	+	790.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027706, intron 51 of 51)	intron (NM_027706, intron 51 of 51)	50525.0	NR_136761	102639399.0	Mm.122052	NR_136761	ENSMUSG00000113666	Gm35725	-	predicted gene, 35725	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-56429251-3	chr13	56429073	56429273	+	720.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9182.0	NM_177809	328258.0	Mm.482177	NM_177809	ENSMUSG00000021509	Slc25a48	AU042651|E230025K15	solute carrier family 25, member 48	protein-coding	1.56393590715993	2.69869987716297	1.47978666341986	1.15313047848657	3.41553738339849	1.23980064770322	3.05122234555632	2.62993506585544	1.89027124899313	0.0655824663872327	0.383379411824601
Merged-chr5-124015974-4	chr5	124015890	124016090	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177876, intron 1 of 3)	intron (NM_177876, intron 1 of 3)	16270.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-9489679-6	chr18	9489681	9489881	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39627.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124616303-2	chr5	124616203	124616403	+	669.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026486, intron 10 of 18)	intron (NM_026486, intron 10 of 18)	-12749.0	NM_011596	21871.0	Mm.1158	NM_011596	ENSMUSG00000038023	Atp6v0a2	8430408C20Rik|AI385560|ATP6a2|AW489264|Atp6n1d|Atp6n2|C76904|ISF|J6B7|SHIF|Stv1|TJ6M|TJ6s|Tj6|V-ATPase 116 kDa|V-ATPase a2	ATPase, H+ transporting, lysosomal V0 subunit A2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-125390761-2	chr5	125390661	125390861	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019639)	promoter-TSS (NM_019639)	-744.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19010650-2	chr7	19010550	19010750	+	988.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6585.0	NM_178757	272359.0	Mm.274237	NM_178757	ENSMUSG00000044030	Irf2bp1	6330414O09Rik|C530033F24	interferon regulatory factor 2 binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-142446585-2	chr5	142446485	142446685	+	550.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_199068, intron 2 of 8)	intron (NM_199068, intron 2 of 8)	-17346.0	NM_172725	231855.0	Mm.78250	NM_172725	ENSMUSG00000039623	Ap5z1	C330006K01Rik	adaptor-related protein complex 5, zeta 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-85451401-4	chr6	85451306	85451506	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163427)	promoter-TSS (NM_001163427)	-99.0	NM_007638	12468.0	Mm.289900	NM_007638	ENSMUSG00000030007	Cct7	AA408524|AL022769|Ccth|Cctz	chaperonin containing Tcp1, subunit 7 (eta)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-64610850-4	chr11	64610677	64610877	+	789.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11B|LTR|ERVK	-174103.0	NR_028445	654805.0	Mm.436132	NR_028445		F930015N05Rik	-	RIKEN cDNA F930015N05 gene	ncRNA	2.56875887812554	3.77983443250869	2.54573685395052	2.1558925539713	3.17541413276643	3.40578729582032	3.12666144837267	1.46990808108832	0.0872190697281843	0.914904976380592	0.998431161219273
Merged-chr2-32958412-2	chr2	32958312	32958512	+	574.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_199302, intron 2 of 24)	B1_Mus1|SINE|Alu	2843.0	NM_199302	227738.0	Mm.248037	NM_199302	ENSMUSG00000026792	Lrsam1	-	leucine rich repeat and sterile alpha motif containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78326619-3	chr15	78326519	78326719	+	958.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358854, intron 2 of 14)	intron (NM_001358854, intron 2 of 14)	629.0	NM_007780	12983.0	Mm.235324	NM_007780	ENSMUSG00000071713	Csf2rb	AI848964|AIC2B|Bc|CDw131|Csf2rb1|Csfgmrb|Il3r|Il3rb|Il3rb1|Il5rb	colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-90339783-4	chr5	90339690	90339890	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198010, intron 1 of 32)	intron (NM_198010, intron 1 of 32)	26395.0	NM_030886	81702.0	Mm.245522	NM_030886	ENSMUSG00000055204	Ankrd17	4933425K22Rik|A130069E23Rik|A930008M01|AA407558|AA516750|AU040470|Foe|Gtar|Mask|mKIAA0697	ankyrin repeat domain 17	protein-coding	3.55769773822002	3.47843575454216	3.25467923452838	3.44434960949424	4.11197495193256	3.6946008027035	3.48270629214049	4.57044551794191	0.873603084222508	0.0855199872343589	0.449089916520426
Merged-chr5-43229159-2	chr5	43229059	43229259	+	662.833313	f1_balb.idr|f1_c57bl6.idr	intron (NR_028417, intron 1 of 7)	MT2A|LTR|ERVL	-4304.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-97849639-7	chr15	97849544	97849744	+	936.357117	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5142.0	NM_001204278	56233.0	Mm.384027	NM_019572	ENSMUSG00000022475	Hdac7	5830434K02Rik|HD7|HD7a|Hdac7a|mFLJ00062	histone deacetylase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-35631933-2	chr5	35631833	35632033	+	571.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43170.0	NR_045807	74364.0	Mm.473123	NM_175208	ENSMUSG00000055061	4931431C16Rik	-	RIKEN cDNA 4931431C16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132843228-4	chr4	132843142	132843342	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146154)	promoter-TSS (NM_146154)	-73.0	NM_146154	100336.0	Mm.105230	NM_146154	ENSMUSG00000028882	Ppp1r8	6330548N22Rik|AU044684|NIPP1	protein phosphatase 1, regulatory (inhibitor) subunit 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-151995186-7	chr4	151995101	151995301	+	884.3095089999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172705, intron 1 of 3)	CpG	978.0	NM_172705	230936.0	Mm.25582	NM_172705	ENSMUSG00000047777	Phf13	BC029632|Phf5|SPOC1	PHD finger protein 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85595275-2	chr12	85595175	85595375	+	606.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-3830.0	NM_001205052	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-112137049-4	chr13	112136953	112137153	+	912.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-151398.0	NM_001168403	77318.0	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117716106-2	chr10	117716006	117716206	+	799.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-5348.0	NM_001288586	17246.0	Mm.22670	NM_010786	ENSMUSG00000020184	Mdm2	1700007J15Rik|AA415488|Mdm-2	transformed mouse 3T3 cell double minute 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117224398-4	chr10	117224307	117224507	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026570)	promoter-TSS (NM_026570)	100.0	NM_026570	64050.0	Mm.233529	NM_026570	ENSMUSG00000020171	Yeats4	4930573H17Rik|B230215M10Rik|GAS41|NuBI-1	YEATS domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135874643-3	chr4	135874561	135874761	+	882.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026383)	promoter-TSS (NM_026383)	-815.0	NM_026383	52830.0	Mm.29159	NM_026383	ENSMUSG00000028675	Pnrc2	0610011E17Rik|D4Bwg0593e	proline-rich nuclear receptor coactivator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-32816216-3	chr12	32816097	32816297	+	843.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE-int|LTR|ERVL-MaLR	-4138.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19500493-5	chr7	19500392	19500592	+	987.8444210000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7839.0	NM_177692	232946.0	Mm.64557	NM_177692	ENSMUSG00000057667	Bloc1s3	BC043666|Blos3|E230011O18|rp	biogenesis of lysosomal organelles complex-1, subunit 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-66447556-3	chr15	66447449	66447649	+	856.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019457, intron 7 of 11)	intron (NM_019457, intron 7 of 11)	53361.0	NM_019457	54562.0	Mm.244890	NM_019457	ENSMUSG00000022375	Lrrc6	LRTP	leucine rich repeat containing 6 (testis)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-101992566-2	chr5	101992454	101992654	+	603.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 3 of 66)	YREP_Mm|Unknown|Unknown	77367.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	1.19803532865315	0.658670207574532	1.32730107332897	1.88677555265547	0.803799281661933	1.25857819126587	0.648027136965099	0.636115849844854	-2.05936166236218	0.174113343168107	0.64198275701627
Merged-chr12-91779164-4	chr12	91779052	91779252	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 1 of 6)	CpG	7284.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-60616333-4	chr3	60616236	60616436	+	999.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253711, intron 6 of 7)	intron (NM_001253711, intron 6 of 7)	115157.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-32703526-4	chr16	32703437	32703637	+	883.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30383.0	NM_001289443	51789.0	Mm.251115	NM_016788	ENSMUSG00000022791	Tnk2	Ack|Ack-1|Ack1|Cdgip|Pyk1	tyrosine kinase, non-receptor, 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-32165053-4	chr17	32164966	32165166	+	816.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008716, intron 1 of 32)	intron (NM_008716, intron 1 of 32)	1786.0	NM_008716	18131.0	Mm.439741	NM_008716	ENSMUSG00000038146	Notch3	AW229011|N3|hpbk	notch 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-43351368-3	chr7	43351271	43351471	+	897.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271019)	promoter-TSS (NM_001271019)	30.0	NM_145581	233186.0	Mm.290569	NM_145581	ENSMUSG00000039013	Siglecf	Siglec5|mSiglec-F	sialic acid binding Ig-like lectin F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-96967761-4	chr11	96967668	96967868	+	972.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030220, intron 1 of 6)	intron (NM_030220, intron 1 of 6)	9920.0	NM_030220	78912.0	Mm.491183	NM_030220	ENSMUSG00000018678	Sp2	4930480I16Rik|mKIAA0048	Sp2 transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88151011-3	chr3	88150937	88151137	+	867.638916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310593, intron 1 of 10)	intron (NM_001310593, intron 1 of 10)	8665.0	NM_133665	17261.0	Mm.28184	NM_133665	ENSMUSG00000001419	Mef2d	C80750	myocyte enhancer factor 2D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-154899159-4	chr4	154899035	154899235	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025582)	promoter-TSS (NM_025582)	-92.0	NM_025582	66469.0	Mm.41868	NM_025582	ENSMUSG00000029059	Fam213b	2810405K02Rik|AI836168|PM/PGFS	family with sequence similarity 213, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-84686936-4	chr3	84686819	84687019	+	855.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177260, intron 3 of 6)	intron (NM_177260, intron 3 of 6)	20727.0	NM_177260	320782.0	Mm.107370	NM_177260	ENSMUSG00000056498	Tmem154	9930117H01Rik	transmembrane protein 154	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133854931-3	chr4	133854815	133855015	+	890.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009097, intron 17 of 21)	intron (NM_009097, intron 17 of 21)	19816.0	NM_001285506	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	-0.944452312839821	-1.06980499840527	-1.08137418347786	-1.08830806243699	-1.09125475322374	-1.06729790773803	-0.492469820684107	-1.08794360978941	1.85122623007205	0.563032835033943	1
Merged-chr8-94871162-2	chr8	94871062	94871262	+	565.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_053246, intron 1 of 8)	C-rich|Low_complexity|Low_complexity	5150.0	NM_053246	114255.0	Mm.203949	NM_053246	ENSMUSG00000040631	Dok4	-	docking protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-37523882-3	chr19	37523776	37523976	+	912.7000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26542.0	NM_175353	107371.0	Mm.24865	NM_175353	ENSMUSG00000053799	Exoc6	4833405E05Rik|AW413330|C430002C19|Sec15|Sec15l1|hbd|msec15	exocyst complex component 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55773215-2	chr19	55773185	55773385	+	593.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001331146, intron 4 of 14)	intron (NM_001331146, intron 4 of 14)	31475.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	-0.776777079575578	-0.763820002747867	-0.76803283027006	-0.771304379054401	-0.60771607870347	0.15596626512538	-0.767101006295594	-0.770731500132408	3.48076419457237	0.209957824408988	1
Merged-chr1-87149496-4	chr1	87149392	87149592	+	772.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021306, intron 14 of 17)	intron (NM_021306, intron 14 of 17)	6644.0	NM_001277925	13599.0	Mm.140765	NM_021306	ENSMUSG00000026247	Ecel1	DINE|xce	endothelin converting enzyme-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-63969000-4	chr5	63968902	63969102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145923)	promoter-TSS (NM_145923)	-105.0	NM_145923	100532.0	Mm.243632	NM_145923	ENSMUSG00000047881	Rell1	AA536743	RELT-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-5410611-2	chr6	5410511	5410711	+	710.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355662, intron 2 of 4)	intron (NM_001355662, intron 2 of 4)	20201.0	NM_001355662	65255.0	Mm.51340	NM_023048	ENSMUSG00000042607	Asb4	8430401O13Rik|AV117194|AW060255	ankyrin repeat and SOCS box-containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-26791994-4	chr10	26791895	26792095	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176837, intron 1 of 14)	intron (NM_176837, intron 1 of 14)	19483.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-20581411-4	chr9	20581287	20581487	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172919)	promoter-TSS (NM_172919)	59.0	NM_172919	244721.0	Mm.86627	NM_172919	ENSMUSG00000058192	Zfp846	2210010B09Rik|9130221F13|Znf846	zinc finger protein 846	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-18933920-2	chr8	18933820	18934020	+	552.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001286469, exon 7 of 7)	exon (NM_001286469, exon 7 of 7)	16951.0	NM_001286469	319581.0	Mm.111354	NM_176951	ENSMUSG00000039814	Xkr5	5430438H03Rik|XRG5	X-linked Kx blood group related 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75337400-2	chr11	75337300	75337500	+	780.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026653, intron 4 of 16)	intron (NM_026653, intron 4 of 16)	10983.0	NM_001164223	68275.0	Mm.102574	NM_026653	ENSMUSG00000000751	Rpa1	5031405K23Rik|70kDa|AA589576|AW557552|RF-A|RP-A|Rpa	replication protein A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-123361470-4	chr8	123361360	123361560	+	886.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172287, intron 10 of 14)	intron (NM_172287, intron 10 of 14)	-12251.0	NM_001359076	66855.0	Mm.178818	NM_025804	ENSMUSG00000001472	Tcf25	1100001J13Rik|1810041K11Rik|D8Ertd325e|Nulp1|mKIAA1049	transcription factor 25 (basic helix-loop-helix)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-37255682-4	chr9	37255587	37255787	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020258)	promoter-TSS (NM_020258)	51.0	NM_020258	56857.0	Mm.440037	NM_020258	ENSMUSG00000032122	Slc37a2	G3PP|Slc37a1|cI-2|ci2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-29653253-2	chr2	29653153	29653353	+	576.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_054050, intron 1 of 23)	intron (NM_054050, intron 1 of 23)	33533.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-160362848-1	chr2	160362748	160362948	+	748.0	f0_balb.idr	TTS (NM_010658)	TTS (NM_010658)	4217.0	NM_010658	16658.0	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-181364905-1	chr2	181364805	181365005	+	570.0	f0_c57.idr	promoter-TSS (NM_144894)	promoter-TSS (NM_144894)	-26.0	NM_144894	229007.0	Mm.87720	NM_144894	ENSMUSG00000027582	Zgpat	1500006I01Rik|BC021513	zinc finger, CCCH-type with G patch domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-75786863-2	chr12	75786763	75786963	+	558.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31455.0	NM_001005510	319565.0	Mm.26652	NM_001005510	ENSMUSG00000063450	Syne2	6820443O06Rik|AW546258|Cpfl8|D12Ertd777e|KASH2|NUA|Nesp2g|dice|mKIAA1011	spectrin repeat containing, nuclear envelope 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-74523581-4	chr17	74523439	74523639	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4756.0	NM_007566	12211.0	Mm.442564	NM_007566	ENSMUSG00000024073	Birc6	A430032G04Rik|A430040A19Rik|AA501170|Bruce|D630005A10Rik|mKIAA1289	baculoviral IAP repeat-containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4940219-2	chr16	4940119	4940319	+	852.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_037666)	promoter-TSS (NR_037666)	-634.0	NR_037666	100503704.0	Mm.480572	NR_037666	ENSMUSG00000097397	Gm16861	-	predicted gene, 16861	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-119399496-2	chr6	119399396	119399596	+	666.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_197985, intron 1 of 7)	Lx5c|LINE|L1	-10762.0	NM_001355692	68465.0	Mm.291826	NM_197985	ENSMUSG00000030168	Adipor2	1110001I14Rik|ADCR2|AI115388|AW554121|D6Ucla1e|Paqr2	adiponectin receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-20204513-4	chr11	20204418	20204618	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008996, intron 1 of 5)	B1F|SINE|Alu	3106.0	NM_008996	19324.0	Mm.271944	NM_008996	ENSMUSG00000020149	Rab1a	Gtbp|Rab-1|Rab1|Ypt1|mKIAA3012	RAB1A, member RAS oncogene family	protein-coding	2.03996054831187	1.94766817807186	1.37388642237371	1.34182217374115	2.05779877041907	2.58753639310122	1.14307200244989	1.95783280013166	0.873433208149262	0.420105740609126	0.899755208109299
Merged-chr15-99341242-4	chr15	99341143	99341343	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310622, intron 1 of 25)	MTD|LTR|ERVL-MaLR	29239.0	NM_001310623	22379.0	Mm.29043	NM_011711	ENSMUSG00000023008	Fmnl3	2700073B04Rik|FBP11|Wbp3|mKIAA2014	formin-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-96717926-2	chr9	96717826	96718026	+	704.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359959, intron 2 of 2)	intron (NM_001359959, intron 2 of 2)	1519.0	NM_001359960	245007.0	Mm.485954	NM_175537	ENSMUSG00000040433	Zbtb38	A930014K01Rik|CIBZ	zinc finger and BTB domain containing 38	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71299680-2	chr17	71299579	71299779	+	604.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357337, intron 2 of 7)	B1_Mus1|SINE|Alu	11332.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	-1.58994551673671	-1.55912852307891	-1.56844783632235	-1.57610299769523	-1.18549093183599	-1.55710898902261	-1.56633814807757	-1.57473272746952	1.78703309985663	0.610309988231842	1
Merged-chr8-105477185-3	chr8	105477087	105477287	+	800.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175160, intron 6 of 13)	intron (NM_175160, intron 6 of 13)	-5765.0	NM_026481	67971.0	Mm.29358	NM_026481	ENSMUSG00000014846	Tppp3	2700055K07Rik|CGI-38|Ceacam9|mmCGM8	tubulin polymerization-promoting protein family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-17144356-4	chr19	17144254	17144454	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181348, intron 9 of 19)	intron (NM_181348, intron 9 of 19)	188236.0	NM_181348	353211.0	Mm.257354	NM_181348	ENSMUSG00000039126	Prune2	6330414G02Rik|A230083H22Rik|A330102H22Rik|Bmcc1|mKIAA0367	prune homolog 2	protein-coding	4.42008941980093	2.7288398222386	4.25508846691615	3.76789383269205	4.21345275681206	4.3657931081104	4.23018927778559	4.2666820404919	0.429754971730122	0.370607512960931	0.863727598865104
Merged-chr11-68483373-4	chr11	68483276	68483476	+	901.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177320, intron 5 of 18)	intron (NM_177320, intron 5 of 18)	-19643.0	NM_001004435	104709.0	Mm.234573	NM_001004435	ENSMUSG00000046207	Pik3r6	BB220380|p84|p84 PIKAP|p87(PIKAP)|p87PIKAP	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-136465371-2	chr1	136465271	136465471	+	903.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-2477.0	NM_001287179	381293.0	Mm.458468	NM_001081258	ENSMUSG00000041498	Kif14	D1Ertd367e|E130203M01	kinesin family member 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111712713-2	chr12	111712613	111712813	+	544.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026511)	promoter-TSS (NM_026511)	240.0	NM_001324481	70369.0	Mm.44239	NM_027404	ENSMUSG00000049792	Bag5	1600025G07Rik|4930405J06Rik|Bag-5	BCL2-associated athanogene 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-123294091-3	chr7	123293919	123294119	+	882.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122641, intron 16 of 18)	intron (NM_001122641, intron 16 of 18)	75896.0	NM_001122643	70497.0	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-54102395-4	chr3	54102270	54102470	+	777.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-53687.0	NM_001253683	22066.0	Mm.10100	NM_016984	ENSMUSG00000027748	Trpc4	CCE1|STRPC4|Trp4|Trrp4	transient receptor potential cation channel, subfamily C, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-95687759-2	chr4	95687659	95687859	+	670.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029347, intron 5 of 10)	intron (NM_029347, intron 5 of 10)	108338.0	NM_029347	75578.0	Mm.276098	NM_029347	ENSMUSG00000028573	Fggy	2310009E04Rik	FGGY carbohydrate kinase domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-118804692-4	chr2	118804585	118804785	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9318.0	NM_026412	51944.0	Mm.252695	NM_026412	ENSMUSG00000027331	Knstrn	1700025D04Rik|C15orf23|D2Ertd750e|SKAP|Traf4af1	kinetochore-localized astrin/SPAG5 binding	protein-coding	3.51631432868502	4.6003795503967	3.23392965164089	5.32444200970478	4.00410224736133	5.1618003556149	3.59448269936162	4.02292292961367	-0.131421448087728	0.81229820454921	0.998431161219273
Merged-chr11-83577598-2	chr11	83577498	83577698	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011338, intron 1 of 3)	MER74B|LTR|ERVL	1038.0	NM_011338	20308.0	Mm.416125	NM_011338	ENSMUSG00000019122	Ccl9	CCF18|MRP-2|Scya10|Scya9	chemokine (C-C motif) ligand 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-112666828-4	chr13	112666699	112666899	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178746, intron 1 of 14)	intron (NM_178746, intron 1 of 14)	6033.0	NM_178746	268706.0	Mm.40834	NM_175376	ENSMUSG00000047789	Slc38a9	4833412L08Rik|6720411P22Rik|9130023D20Rik|9430067K09Rik|A730092C09	solute carrier family 38, member 9	protein-coding	0.856990064177349	0.692067372579073	1.17187484539856	0.479251011716494	0.967656514125932	0.495561249033578	1.08052802298261	0.480355687291547	-0.203280955364597	0.903443936523681	1
Merged-chr3-79673210-1	chr3	79673110	79673310	+	614.0	f0_balb.idr	intron (NM_212452, intron 5 of 17)	(CAAA)n|Simple_repeat|Simple_repeat	44131.0	NM_029482	75939.0	Mm.221520	NM_029482	ENSMUSG00000027811	4930579G24Rik	-	RIKEN cDNA 4930579G24 gene	protein-coding	1.08069307923443	1.64578630410756	0.776565833473488	1.95536315891687	1.08978672853871	1.03431330197098	1.47511679565431	0.766698095404587	-1.25146922797343	0.359374134125973	0.856306289008338
Merged-chr17-69215897-4	chr17	69215823	69216023	+	907.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355736, intron 3 of 21)	intron (NM_001355736, intron 3 of 21)	56567.0	NM_001355735	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-121204680-6	chr5	121204631	121204831	+	923.638916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011290, intron 1 of 6)	CpG	230.0	NM_011290	19988.0	Mm.262021	NM_011290	ENSMUSG00000029614	Rpl6	Taxreb107	ribosomal protein L6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-62498017-2	chr4	62497917	62498117	+	862.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_138653)	TTS (NM_138653)	4183.0	NM_024257	72748.0	Mm.41506	NM_024257	ENSMUSG00000038422	Hdhd3	2810435D12Rik	haloacid dehalogenase-like hydrolase domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-67712529-2	chr14	67712429	67712629	+	890.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_175384, intron 4 of 14)	intron (NM_175384, intron 4 of 14)	3081.0	NM_001110162	108912.0	Mm.33831	NM_175384	ENSMUSG00000048922	Cdca2	2610311M19Rik|AI586158	cell division cycle associated 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180199687-3	chr1	180199580	180199780	+	899.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-3660.0	NM_001359268	67426.0	Mm.38330	NM_023341	ENSMUSG00000026489	Coq8a	4632432J16Rik|AI462003|Adck3|Cabc1|mKIAA0451	coenzyme Q8A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-29169561-3	chr7	29169479	29169679	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_182696)	promoter-TSS (NM_182696)	-631.0	NM_001358852	243897.0	Mm.389886	NM_182694	ENSMUSG00000031493	Ggn	AI593290	gametogenetin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3943632-2	chr19	3943532	3943732	+	748.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001161428, exon 8 of 10)	exon (NM_001161428, exon 8 of 10)	8446.0	NM_001161428	54445.0	Mm.262094	NM_019449	ENSMUSG00000036908	Unc93b1	Unc-93B1|Unc93b	unc-93 homolog B1 (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-81372411-3	chr6	81372316	81372516	+	883.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	523247.0	NR_106091	102465711.0		NR_106091	ENSMUSG00000106154	Mir7232	mmu-mir-7232	microRNA 7232	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-31130480-2	chr9	31130380	31130580	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011176, intron 1 of 18)	intron (NM_011176, intron 1 of 18)	1319.0	NM_011176	19143.0	Mm.243926	NM_011176	ENSMUSG00000031995	St14	Epithin|MT-SP1|Prss14|Tmprss14|mCAP3|matriptase	suppression of tumorigenicity 14 (colon carcinoma)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-117583690-2	chr6	117583590	117583790	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	88455.0	NR_152214	100126203.0	Mm.217172	NR_152214		6820426E19Rik	Gm43983	RIKEN cDNA 6820426E19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-61470263-3	chr11	61470161	61470361	+	872.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15170.0	NM_001347545	76293.0	Mm.272278	NM_029568	ENSMUSG00000042436	Mfap4	1110007F23Rik	microfibrillar-associated protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-114631967-2	chr5	114631867	114632067	+	586.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_022017, intron 7 of 15)	PB1D9|SINE|Alu	26454.0	NM_022017	63873.0	Mm.266450	NM_022017	ENSMUSG00000014158	Trpv4	0610033B08Rik|OTRPC4|Trp12|VR-OAC|VRL-2|VROAC	transient receptor potential cation channel, subfamily V, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-31108405-4	chr2	31108302	31108502	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355105, intron 1 of 15)	MTD|LTR|ERVL-MaLR	-11902.0	NM_001177650	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-181928398-2	chr2	181928298	181928498	+	657.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	-62828.0	NM_001205282	672125.0	Mm.489571	NM_001205282	ENSMUSG00000098505	Gm14496	-	predicted gene 14496	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-111977936-4	chr9	111977813	111978013	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	140798.0	NR_029823	723815.0		NR_029823	ENSMUSG00000065441	Mir128-2	Mirn128-2|Mirn128b|mir-128-2|mir-128b	microRNA 128-2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-29893972-3	chr5	29893861	29894061	+	627.966675	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-119153.0	NM_001314054	16193.0	Mm.1019	NM_031168	ENSMUSG00000025746	Il6	Il-6	interleukin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-130797987-3	chr4	130797890	130798090	+	886.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011520, intron 1 of 4)	intron (NM_011520, intron 1 of 4)	5453.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36065629-3	chr1	36065601	36065801	+	820.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2699.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94355243-4	chr10	94355137	94355337	+	987.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 1 of 4)	intron (NM_001359762, intron 1 of 4)	43288.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-17915344-3	chr14	17915226	17915426	+	723.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113417, intron 2 of 9)	intron (NM_001113417, intron 2 of 9)	-66318.0	NM_009380	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-32397654-4	chr3	32397552	32397752	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-31987.0	NM_009517	22401.0	Mm.35705	NM_009517	ENSMUSG00000027663	Zmat3	Wig1	zinc finger matrin type 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100704335-4	chr11	100704208	100704408	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030150)	promoter-TSS (NM_030150)	-37.0	NM_030150	80861.0	Mm.271830	NM_030150	ENSMUSG00000017830	Dhx58	B430001I08Rik|D11Lgp2e|LPG2|Lgp2|RLR-3	DEXH (Asp-Glu-X-His) box polypeptide 58	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-74207865-4	chr18	74207749	74207949	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164355)	promoter-TSS (NM_001164355)	-31.0	NM_025581	66468.0	Mm.283406	NM_025581	ENSMUSG00000036223	Ska1	2810433K01Rik|AV117428	spindle and kinetochore associated complex subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46395770-4	chr19	46395685	46395885	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016860)	promoter-TSS (NM_016860)	-50.0	NM_016860	54130.0	Mm.3118	NM_016860	ENSMUSG00000025228	Actr1a	Arp1|alpha-Arp1	ARP1 actin-related protein 1A, centractin alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-9990556-2	chr19	9990442	9990642	+	888.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_011913, exon 7 of 12)	exon (NM_011913, exon 7 of 12)	7896.0	NM_010239	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-85401967-2	chr9	85401883	85402083	+	831.0	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74833.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	1.20498585598922	1.5231213942332	0.679682021808847	0.456748972054372	0.443783433743171	0.47982507401039	1.26612537351611	0.458333004075757	-1.39849913193897	0.420020701183358	0.899680142727551
Merged-chr11-69799630-2	chr11	69799423	69799623	+	759.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_010198, intron 2 of 5)	intron (NM_010198, intron 2 of 5)	2193.0	NM_001291104	14166.0	Mm.269011	NM_010198	ENSMUSG00000042826	Fgf11	Fgf-11|Fhf-3|Fhf3	fibroblast growth factor 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-94697130-2	chr16	94697030	94697230	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	85711.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-81208227-4	chr13	81208107	81208307	+	964.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 85 of 89)	intron (NM_054053, intron 85 of 89)	244133.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21956827-2	chr9	21956727	21956927	+	746.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_132099)	promoter-TSS (NR_132099)	-821.0	NR_132099	100049077.0	Mm.46647	NR_132099		Gm45914	-	predicted gene, 45914	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-35983288-2	chr12	35983188	35983388	+	789.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9637.0	NM_011783	23795.0	Mm.7244	NM_011783	ENSMUSG00000020581	Agr2	Agr2h|Gob-4|HAG-2|XAG-2|mAG-2	anterior gradient 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-99480701-2	chr9	99480601	99480801	+	724.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001165957)	TTS (NM_001165957)	10280.0	NR_028123	69797.0	Mm.307159	NR_028123	ENSMUSG00000046242	1600029I14Rik	-	RIKEN cDNA 1600029I14 gene	ncRNA	-0.806646654094072	-1.04988199689234	-1.0611265768558	-1.06680075472996	-1.06954715631039	-1.04744524950637	-0.604197525866305	-1.06646056924903	0.83064185322789	0.799046023401613	1
Merged-chr8-108778334-1	chr8	108778234	108778434	+	580.0	f0_balb.idr	intron (NM_007496, intron 1 of 9)	intron (NM_007496, intron 1 of 9)	63690.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	-1.29633872064033	-1.26720680975202	-1.27768629845203	-1.28629446248818	-0.70879630402184	-1.2649358608345	-1.2753139719142	-1.28475360524138	2.50884260628271	0.468217847016783	1
Merged-chr18-75218980-1	chr18	75218880	75219080	+	643.5	f0_balb.idr	intron (NM_027727, intron 14 of 16)	L1MC5a|LINE|L1	78337.0	NR_045394	100503117.0	Mm.250517	NR_045393	ENSMUSG00000102047	2010010A06Rik	5033420E22Rik	RIKEN cDNA 2010010A06 gene	ncRNA	2.37251916554193	1.30808448795851	2.04273060261879	2.502545509707	2.39253890298122	1.3145530769722	2.05871848475081	2.51565964151302	0.0361301286373447	0.971746663520032	0.998431161219273
Merged-chr9-90112056-2	chr9	90111956	90112156	+	752.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039147, intron 1 of 12)	intron (NM_001039147, intron 1 of 12)	2764.0	NM_001039147	21761.0	Mm.426209	NM_024431	ENSMUSG00000062270	Morf4l1	MORFRG15|MRG15|TEG-189|Tex189|mKIAA4002	mortality factor 4 like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46498057-2	chr19	46497957	46498157	+	666.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3591.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124894208-4	chr6	124894113	124894313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	-6013.0	NM_013488	12504.0	Mm.2209	NM_013488	ENSMUSG00000023274	Cd4	L3T4|Ly-4	CD4 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-33765738-4	chr1	33765625	33765825	+	947.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359275, intron 14 of 15)	intron (NM_001359275, intron 14 of 15)	-7975.0	NM_145392	213539.0	Mm.247037	NM_145392	ENSMUSG00000042215	Bag2	2610042A13Rik|BC016230	BCL2-associated athanogene 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-126597537-2	chr2	126597437	126597637	+	662.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008230, intron 10 of 11)	intron (NM_008230, intron 10 of 11)	21141.0	NM_008230	15186.0	Mm.18603	NM_008230	ENSMUSG00000027360	Hdc	AW108189|Hdc-a|Hdc-c|Hdc-e|Hdc-s	histidine decarboxylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111525064-3	chr12	111524898	111525098	+	643.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13103.0	NM_178041	217869.0	Mm.271222	NM_173363	ENSMUSG00000021282	Eif5	2810011H21Rik|D12Ertd549e	eukaryotic translation initiation factor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-92694037-2	chr16	92693937	92694137	+	754.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111022, intron 3 of 6)	intron (NM_001111022, intron 3 of 6)	3292.0	NM_001111023	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131086369-2	chr1	131086269	131086469	+	917.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_008551, intron 1 of 9)	intron (NM_008551, intron 1 of 9)	11474.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111377765-4	chr12	111377679	111377879	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183016)	promoter-TSS (NM_183016)	-61.0	NM_183016	217866.0	Mm.27397	NM_183016	ENSMUSG00000021279	Cdc42bpb	MRCKb	CDC42 binding protein kinase beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-13869711-4	chr8	13869597	13869797	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181854)	promoter-TSS (NM_181854)	56.0	NM_181854	101994.0	Mm.289346	NM_181854	ENSMUSG00000047710	Champ1	AA675043|AI116001|D8Ertd457e|D8Ertd569e|Zfp828|Znf828|mKIAA1802	chromosome alignment maintaining phosphoprotein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-118562298-4	chr6	118562167	118562367	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081112)	promoter-TSS (NM_001081112)	-11.0	NM_001081112	232339.0	Mm.276116	NM_001081112	ENSMUSG00000007827	Ankrd26	5730521P14Rik|BC008111|mKIAA1074	ankyrin repeat domain 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-170170391-4	chr2	170170291	170170491	+	878.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27716.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-51778470-3	chr3	51778364	51778564	+	856.2000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 2 of 4)	intron (NM_001004176, intron 2 of 4)	117285.0	NM_001310482	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-9638212-1	chr14	9638112	9638312	+	549.0	f0_balb.idr	intron (NM_001360141, intron 8 of 9)	MIR3|SINE|MIR	-245883.0	NR_030680	100042415.0	Mm.235938	NR_030680	ENSMUSG00000089686	Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-33877953-2	chr1	33877853	33878053	+	940.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177235, intron 3 of 6)	intron (NM_177235, intron 3 of 6)	29668.0	NM_177235	320705.0	Mm.336619	NM_177235	ENSMUSG00000042182	Bend6	B230209C24Rik	BEN domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-106156577-3	chr9	106156464	106156664	+	733.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_174846, exon 3 of 4)	exon (NM_174846, exon 3 of 4)	1574.0	NM_001039586	235582.0	Mm.335420	NM_174846	ENSMUSG00000020258	Glyctk	6230410P16Rik|C430006L12	glycerate kinase	protein-coding	0.63845895706839	0.478098226457972	0.461629931560138	0.448534989028621	0.975582596891422	2.03090712372409	1.60084901546899	0.450848389435544	4.28451084063054	0.0101262805812677	0.109788677888265
Merged-chr17-35000257-4	chr17	35000038	35000238	+	947.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011690)	promoter-TSS (NM_011690)	608.0	NM_033075	110956.0	Mm.22506	NM_033075		D17H6S56E-5	G7e	DNA segment, Chr 17, human D6S56E 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-40776606-4	chr4	40776514	40776714	+	929.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-18729.0	NM_021535	74255.0	Mm.289929	NM_021535	ENSMUSG00000028409	Smu1	2600001O03Rik|2610203K23Rik|AB044414|AI845086|AW556129|Bwd	smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25121796-2	chr7	25121696	25121896	+	672.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163556, intron 1 of 13)	intron (NM_001163556, intron 1 of 13)	10664.0	NM_011138	18987.0	Mm.76683	NM_011138	ENSMUSG00000008496	Pou2f2	Oct-2|Oct2a|Oct2b|Oct2c|Oct2d|Otf-2|Otf2	POU domain, class 2, transcription factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-41405025-4	chr3	41404918	41405118	+	952.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	88181.0	NR_040385	78706.0	Mm.366094	NR_040385	ENSMUSG00000097639	Platr4	C430002E04Rik	pluripotency associated transcript 4	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-98995324-2	chr7	98995224	98995424	+	825.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 8 of 14)	HAL1ME|LINE|L1	145820.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-94901859-3	chr4	94901754	94901954	+	617.044434	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26989.0	NM_027089	67753.0	Mm.25097	NM_027089	ENSMUSG00000028575	Eqtn	1700028B15Rik|4930579C15Rik|Afaf|C81058|Eqtl|Eqts	equatorin, sperm acrosome associated	protein-coding	2.08205296988435	2.20059613840743	2.48650489009935	2.59845795524066	2.48470966728084	1.37801191542742	2.85749776848333	1.55863848419392	-0.272029027809173	0.7729745124918	0.998431161219273
Merged-chr18-4279348-4	chr18	4279242	4279442	+	785.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	73611.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59041809-4	chr15	59041682	59041882	+	968.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144800, intron 3 of 14)	intron (NM_144800, intron 3 of 14)	40244.0	NM_001146180	211401.0	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-58803099-3	chr15	58803005	58803205	+	874.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175212, intron 1 of 6)	intron (NM_175212, intron 1 of 6)	20322.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-170103949-1	chr2	170103849	170104049	+	613.0	f1_c57bl6.idr	Intergenic	Intergenic	27271.0	NM_001033299	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	1.58177673850069	2.08022424942965	2.44814586686759	2.07756878140913	2.0924194085794	2.09552330455169	2.4676793878881	1.24687109014428	-0.0762769101115142	0.938538231479819	0.998431161219273
Merged-chr19-16701957-3	chr19	16701855	16702055	+	709.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173028, intron 31 of 71)	intron (NM_173028, intron 31 of 71)	78978.0	NM_173028	271564.0	Mm.211963	NM_173028	ENSMUSG00000046230	Vps13a	4930425F11|4930516E05Rik|4930543C13Rik|9930023P20|Chac|Chorein|D330038K10Rik|mKIAA0986	vacuolar protein sorting 13A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-139213290-4	chr7	139213170	139213370	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162540)	promoter-TSS (NM_001162540)	-5.0	NM_001143755	76612.0	Mm.17757	NM_027164	ENSMUSG00000015980	Lrrc27	1700071K18Rik|2310044E02Rik	leucine rich repeat containing 27	protein-coding	6.35116614698177	5.25216356528482	7.17892791231109	6.27417269494356	5.98297607421611	5.57882891531094	6.17742610995935	6.34473964586149	-0.406352483123839	0.199082456843166	0.682643867862233
Merged-chr2-64098373-2	chr2	64098273	64098473	+	549.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001267847)	promoter-TSS (NM_001267847)	-335.0	NM_001267847	60344.0	Mm.130769	NM_021716	ENSMUSG00000075324	Fign	fi|fidget	fidgetin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-137426738-1	chr4	137426638	137426838	+	551.0	f1_c57bl6.idr	intron (NM_026419, intron 2 of 7)	B2_Mm1t|SINE|B2	3782.0	NM_026419	67868.0	Mm.297477	NM_026419	ENSMUSG00000023433	Cela3b	0910001F22Rik|2310074F01Rik|AI504000|Ela3|Ela3b	chymotrypsin-like elastase family, member 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-58399589-4	chr10	58399491	58399691	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359116, intron 2 of 9)	intron (NM_001359116, intron 2 of 9)	5218.0	NM_001346676	110829.0	Mm.57734	NM_026148	ENSMUSG00000019920	Lims1	2310016J22Rik|4921524A02Rik|AI507642|AU021743|AW551584|C430041B13Rik|Lims1l|PINCH|PINCH1	LIM and senescent cell antigen-like domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98121893-6	chr11	98121729	98121929	+	972.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028149, intron 2 of 14)	intron (NM_028149, intron 2 of 14)	27787.0	NM_028149	72194.0	Mm.218350	NM_028149	ENSMUSG00000020883	Fbxl20	2610511F20Rik|4632423N09Rik|AI849362|AL117906|C86145|Fbl2|Scr|mKIAA4147	F-box and leucine-rich repeat protein 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-102884505-4	chr14	102884420	102884620	+	634.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	98112.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-138389243-4	chr7	138389151	138389351	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183289, intron 3 of 11)	intron (NM_183289, intron 3 of 11)	8479.0	NM_183289	70571.0	Mm.334297	NM_183289	ENSMUSG00000091002	Tcerg1l	5730476P14Rik	transcription elongation regulator 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-8690687-6	chr4	8690611	8690811	+	995.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001277149, exon 1 of 38)	5' UTR (NM_001277149, exon 1 of 38)	305.0	NM_001277149	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134706662-3	chr6	134706569	134706769	+	898.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170479, intron 3 of 3)	intron (NM_001170479, intron 3 of 3)	65729.0	NM_026371	67774.0	Mm.41892	NM_026371	ENSMUSG00000042992	Borcs5	5830457J20Rik|AW124643|Loh12cr1	BLOC-1 related complex subunit 5	protein-coding	0.347826474633656	-0.00503036783796751	0.163772946466021	-0.0142293862429956	-0.0198840312982111	0.350816481342162	0.661567458711531	-0.0135299982716852	1.14348379864209	0.591953666055312	1
Merged-chr11-59965406-4	chr11	59965315	59965515	+	803.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009026)	promoter-TSS (NM_009026)	-471.0	NM_009026	19416.0	Mm.3903	NM_009026	ENSMUSG00000049892	Rasd1	Dexras1	RAS, dexamethasone-induced 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-38556016-2	chr2	38555916	38556116	+	856.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021606, intron 2 of 9)	intron (NM_021606, intron 2 of 9)	44140.0	NM_001159631	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-6223242-3	chr4	6223140	6223340	+	952.5833130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32135.0	NM_026534	68053.0	Mm.404043	NM_026534	ENSMUSG00000028243	Ubxn2b	3110003A22Rik|6430407D20Rik|AI451665|p37	UBX domain protein 2B	protein-coding	4.50428250086413	4.5170696440732	3.1273763119352	4.26757790807219	2.88434973613667	2.51338659211396	2.41449867541398	2.50427963683691	-2.4740142976253	3.451058839267e-05	0.00129934531234912
Merged-chr12-38767357-4	chr12	38767266	38767466	+	949.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR11C_MM|LTR|ERVK	-12716.0	NM_001347379	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	2.81961435558073	2.02721069877579	1.46816786331032	2.89162979001591	2.27210042797872	2.6868964542052	3.29618707719464	2.98661522399896	0.818342017444716	0.323840712801564	0.826356696166097
Merged-chr14-103825666-2	chr14	103825566	103825766	+	552.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001276296, intron 1 of 7)	intron (NM_001276296, intron 1 of 7)	18035.0	NM_007904	13618.0	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-64527770-1	chr1	64527670	64527870	+	571.0	f0_balb.idr	Intergenic	Intergenic	-5034.0	NM_009952	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-31084757-2	chr19	31084657	31084857	+	562.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_031249, exon 1 of 1)	exon (NM_031249, exon 1 of 1)	1916.0	NM_031249	83410.0	Mm.22031	NM_031249	ENSMUSG00000053536	Cstf2t	64kDa|C77975|tCstF-64|tauCstF-64	cleavage stimulation factor, 3' pre-RNA subunit 2, tau	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-107675885-4	chr11	107675806	107676006	+	950.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198298, intron 30 of 31)	intron (NM_198298, intron 30 of 31)	38184.0	NR_105897	102465562.0		NR_105897	ENSMUSG00000098497	Mir6932	Gm27691|mmu-mir-6932	microRNA 6932	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-13644664-3	chr16	13644581	13644781	+	888.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358452, intron 11 of 22)	L1MC4|LINE|L1	23489.0	NM_001358452	74108.0	Mm.182350	NM_028761	ENSMUSG00000022685	Parn	1200003I18Rik|DAN	poly(A)-specific ribonuclease (deadenylation nuclease)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-84995284-4	chr15	84995168	84995368	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7297.0	NM_001033273	223739.0	Mm.323925	NM_001033273	ENSMUSG00000036046	5031439G07Rik	AW554572|mKIAA0930	RIKEN cDNA 5031439G07 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-32032228-4	chr9	32032103	32032303	+	986.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-83933.0	NM_001195632	330914.0	Mm.46683	NM_177379	ENSMUSG00000041444	Arhgap32	3426406O18Rik|Gc-gap|Grit|Px-rics|Rics|mKIAA0712|p200Rhogap|p250Gap	Rho GTPase activating protein 32	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-72852725-4	chr2	72852620	72852820	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39003.0	NR_102349	76218.0	Mm.75260	NR_102348	ENSMUSG00000085427	6430710C18Rik	5033406J01Rik	RIKEN cDNA 6430710C18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-5445967-3	chr16	5445844	5446044	+	655.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-189988.0	NM_027446	70511.0	Mm.45780	NM_027446	ENSMUSG00000022544	Eef2kmt	5730409G15Rik|Fam86|Fam86a|eEF2-KMT	eukaryotic elongation factor 2 lysine methyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165993794-4	chr2	165993675	165993875	+	985.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008679, intron 1 of 22)	intron (NM_008679, intron 1 of 22)	1138.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-10318259-4	chr17	10318161	10318361	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021881, intron 1 of 6)	CpG	1100.0	NM_021881	19317.0	Mm.130694	NM_021881	ENSMUSG00000062078	Qk	1110003F05Rik|1500005P18|QkI|l(17)-1Wis|l17Wis1	quaking	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-37354095-2	chr13	37353995	37354195	+	784.799988	f1_balb.idr|f1_c57bl6.idr	intron (NM_010745, intron 1 of 4)	intron (NM_010745, intron 1 of 4)	8750.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-5384277-3	chr6	5384208	5384408	+	649.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023048, intron 1 of 5)	intron (NM_023048, intron 1 of 5)	922.0	NM_023048	65255.0	Mm.51340	NM_023048	ENSMUSG00000042607	Asb4	8430401O13Rik|AV117194|AW060255	ankyrin repeat and SOCS box-containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-69417835-3	chr12	69417773	69417973	+	869.138916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45723.0	NM_007481	11845.0	Mm.27308	NM_007481	ENSMUSG00000044147	Arf6	AI788669|AW496366	ADP-ribosylation factor 6	protein-coding	2.03248925185341	3.06230466842526	2.4792641931918	1.99160046429957	3.12150417497684	1.94494976571441	1.38278437652712	2.96356585959136	0.180141303915957	0.843498232011541	0.998431161219273
Merged-chr19-5511338-3	chr19	5511218	5511418	+	869.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024560)	promoter-TSS (NM_001024560)	-801.0	NM_001024560	225861.0	Mm.20071	NM_001024560	ENSMUSG00000056185	Snx32	B930037P14Rik|Snx6b	sorting nexin 32	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-166137702-4	chr1	166137607	166137807	+	976.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360925, intron 1 of 5)	intron (NM_001360925, intron 1 of 5)	7486.0	NM_001360925	59290.0	Mm.46357	NM_021610	ENSMUSG00000000544	Gpa33	2010310L10Rik|2210401D16Rik|BB116197|mA33	glycoprotein A33 (transmembrane)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-67537562-4	chr11	67537455	67537655	+	862.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008088, intron 1 of 13)	intron (NM_008088, intron 1 of 13)	4557.0	NM_008088	14457.0	Mm.40338	NM_008088	ENSMUSG00000033066	Gas7	AW124766|B230343A10Rik|Gas7-cb	growth arrest specific 7	protein-coding	-0.585750136378803	-0.574740085344961	-0.578352923889335	-0.0496394507928595	-0.585064430927764	-0.573924946871814	-0.577556558535478	-0.0428439794746447	0.0283831331496041	0.992068125565279	1
Merged-chr4-135495698-4	chr4	135495602	135495802	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030189)	promoter-TSS (NM_030189)	-285.0	NM_030189	78806.0	Mm.374844	NM_030189	ENSMUSG00000028801	Stpg1	4930403G18Rik|4930555I21Rik|Mapo2	sperm tail PG rich repeat containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-114379836-2	chr5	114379736	114379936	+	921.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_054093)	promoter-TSS (NM_054093)	669.0	NM_001159941	330171.0	Mm.238285	NM_026145	ENSMUSG00000001098	Kctd10	AW536343|C87062|mBACURD3	potassium channel tetramerisation domain containing 10	protein-coding	-1.84303373260285	-1.81303463126392	-1.82210660711932	-1.82955859819738	-1.84092785115721	-1.81106869625141	-1.8200529106377	-1.54273750312762	1.50114612804783	0.670102668014672	1
Merged-chr2-172831326-2	chr2	172831220	172831420	+	571.0	f0_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	109001.0	NM_007557	12162.0	Mm.595	NM_007557	ENSMUSG00000008999	Bmp7	OP1	bone morphogenetic protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-18243818-2	chr3	18243718	18243918	+	563.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007825)	promoter-TSS (NM_007825)	-480.0	NM_007825	13123.0	Mm.316000	NM_007825	ENSMUSG00000039519	Cyp7b1	AW261589|D3Ertd552e|hct-1	cytochrome P450, family 7, subfamily b, polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75657315-2	chr11	75657269	75657469	+	998.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080775, intron 1 of 31)	intron (NM_001080775, intron 1 of 31)	1354.0	NM_001080775	17913.0	Mm.234502	NM_008659	ENSMUSG00000017774	Myo1c	C80397|MMIb|MYO1E|NMI|mm1beta|myr2	myosin IC	protein-coding	-1.14149542847138	-0.33100028091332	-1.12720875772362	-1.13728867753953	-1.14086750656251	-1.11193125150289	-1.12436624874263	-1.1356767669541	-2.98824766641611	0.369648585513947	1
Merged-chr1-54832882-3	chr1	54832721	54832921	+	728.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081433, intron 1 of 27)	(GGGA)n|Simple_repeat|Simple_repeat	93566.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-94401347-1	chr11	94401247	94401447	+	586.0	f0_balb.idr	Intergenic	MTC|LTR|ERVL-MaLR	-8371.0	NM_029600	76408.0	Mm.23942	NM_029600	ENSMUSG00000020865	Abcc3	1700019L09Rik|ABC31|MLP2|MOAT-D|MRP3	ATP-binding cassette, sub-family C (CFTR/MRP), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-32131815-2	chr5	32131715	32131915	+	656.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-4657.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-87187148-4	chr1	87187054	87187254	+	942.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027084, exon 11 of 13)	exon (NM_027084, exon 11 of 13)	-3443.0	NM_021600	11447.0	Mm.2811	NM_021600	ENSMUSG00000026251	Chrnd	Achr-4|Acrd|L10076	cholinergic receptor, nicotinic, delta polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-32124537-4	chr16	32124457	32124657	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24755.0	NM_025892	66994.0	Mm.22990	NM_025892	ENSMUSG00000035790	Cep19	1500031L02Rik|AI428934|AL022620	centrosomal protein 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-84994059-3	chr15	84993919	84994119	+	752.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6048.0	NM_001033273	223739.0	Mm.323925	NM_001033273	ENSMUSG00000036046	5031439G07Rik	AW554572|mKIAA0930	RIKEN cDNA 5031439G07 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100868737-4	chr7	100868640	100868840	+	905.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5327.0	NM_177073	320100.0	Mm.40336	NM_177073	ENSMUSG00000008318	Relt	E430021K24Rik|Tnfrsf19l	RELT tumor necrosis factor receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-136144700-2	chr1	136144600	136144800	+	722.666626	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_153829, exon 2 of 36)	non-coding (NR_153829, exon 2 of 36)	13310.0	NR_153829	16565.0	Mm.276135	NM_019962	ENSMUSG00000041642	Kif21b	2610511N21Rik|mKIAA0449	kinesin family member 21B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-21981643-4	chr14	21981529	21981729	+	891.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7972.0	NM_145459	218820.0	Mm.292401	NM_145459	ENSMUSG00000039081	Zfp503	AI181838|B830002A16Rik|Nolz-1|Nolz1|Znf503	zinc finger protein 503	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-13442031-2	chr11	13441931	13442131	+	715.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus4|LINE|L1	737010.0	NR_131011	75280.0	Mm.108492	NR_131011	ENSMUSG00000085452	4930554G24Rik	-	RIKEN cDNA 4930554G24 gene	ncRNA	-0.382528546481038	-0.37087112580889	-0.0608184478040217	0.228866524212388	-0.120879094904441	-0.370005305087133	-0.373859775388374	-0.37713761897855	-1.87159460046092	0.464029833137047	1
Merged-chr6-54058941-4	chr6	54058860	54059060	+	988.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163640, intron 1 of 12)	intron (NM_001163640, intron 1 of 12)	19028.0	NM_001163640	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33931716-2	chr16	33931616	33931816	+	938.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 10 of 14)	ORR1F|LTR|ERVL-MaLR	35322.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-87607253-2	chr1	87607153	87607353	+	654.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A|LTR|ERVL-MaLR	12703.0	NM_015750	23956.0	Mm.143717	NM_015750	ENSMUSG00000079434	Neu2	MBS|MSS|MTS	neuraminidase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-97478836-4	chr16	97478747	97478947	+	969.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020622, intron 3 of 7)	intron (NM_020622, intron 3 of 7)	-15941.0	NR_003520	17857.0	Mm.33996	NM_010846	ENSMUSG00000000386	Mx1	AI893580|Mx|Mx-1	MX dynamin-like GTPase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44860968-3	chr7	44860870	44861070	+	858.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290764, intron 9 of 16)	intron (NM_001290764, intron 9 of 16)	3567.0	NM_001290767	59047.0	Mm.238254	NM_021549	ENSMUSG00000002963	Pnkp	1810009G08Rik|PNK	polynucleotide kinase 3'- phosphatase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-51931511-3	chr1	51931437	51931637	+	769.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15559.0	NM_010863	17912.0	Mm.3390	NM_010863	ENSMUSG00000018417	Myo1b	AA406997|MIH-L|MMIa	myosin IB	protein-coding	2.68553196455195	2.94102500326748	1.58543165771398	2.23848792078391	2.63131948436698	1.65300595996348	3.28495060089447	1.28148841021294	0.021119558400738	0.982703372044781	0.998431161219273
Merged-chr16-24361011-3	chr16	24360855	24361055	+	767.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32395.0	NM_178665	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81804881-1	chr15	81804781	81804981	+	577.0	f0_balb.idr	intron (NM_153484, intron 1 of 3)	intron (NM_153484, intron 1 of 3)	2208.0	NM_153484	21685.0	Mm.270278	NM_017376	ENSMUSG00000022389	Tef	2310028D20Rik	thyrotroph embryonic factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-51648542-4	chr3	51648485	51648685	+	949.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12594.0	NM_174995	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-104349518-2	chr8	104349418	104349618	+	563.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_153582, exon 4 of 4)	3' UTR (NM_153582, exon 4 of 4)	8924.0	NM_024217	68119.0	Mm.390108	NM_024217	ENSMUSG00000031875	Cmtm3	9430096L06Rik|AI413895|BNAS2|Cklfsf3	CKLF-like MARVEL transmembrane domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47646869-3	chr17	47646791	47646991	+	950.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198421, intron 1 of 6)	B3|SINE|B2	16201.0	NM_198421	224836.0	Mm.59393	NM_198421	ENSMUSG00000090115	Usp49	C330046L10Rik|Gm545	ubiquitin specific peptidase 49	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-69251684-3	chr14	69251638	69251838	+	789.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026331, intron 1 of 3)	B1F1|SINE|Alu	33365.0	NM_026331	67712.0	Mm.293635	NM_026331	ENSMUSG00000034248	Slc25a37	1700020E22Rik|4930513O14Rik|4930526G11Rik|AI848481|C330015G08Rik|Mfrn|Mfrn1|Mscp|frascati|mitoferrin	solute carrier family 25, member 37	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44880808-2	chr9	44880708	44880908	+	671.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081049, intron 1 of 35)	intron (NM_001081049, intron 1 of 35)	466.0	NM_001357549	214162.0	Mm.2389	NM_001081049	ENSMUSG00000002028	Kmt2a	6430520K01|ALL-1|All1|Cxxc7|HRX|HTRX1|Mll|Mll1|mKIAA4050	lysine (K)-specific methyltransferase 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-37436642-4	chr19	37436524	37436724	+	984.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008245, intron 1 of 3)	intron (NM_008245, intron 1 of 3)	1783.0	NM_008245	15242.0	Mm.33896	NM_008245	ENSMUSG00000024986	Hhex	Hex|Hex1|Hhex-rs2|Prh|Prhx	hematopoietically expressed homeobox	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5727115-2	chr17	5727015	5727215	+	582.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 7 of 8)	intron (NM_146073, intron 7 of 8)	-71542.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-29769904-4	chr7	29769786	29769986	+	990.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023750, intron 1 of 4)	intron (NM_023750, intron 1 of 4)	1334.0	NM_023750	74352.0	Mm.251083	NM_023750	ENSMUSG00000046185	Zfp84	2210410P13Rik|4633401C23Rik|AI415447|BB081605|C86188|KRAB18|Zfp69	zinc finger protein 84	protein-coding	2.17134175984737	3.62207676243456	1.9432120633989	3.54994834591084	2.98212719889433	3.87799109372182	4.53821187205116	3.76655534197866	1.30168061373043	0.0523990974964285	0.334910861389138
Merged-chr13-8871789-3	chr13	8871694	8871894	+	727.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172445)	promoter-TSS (NM_172445)	-58.0	NM_001039388	207615.0	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-6587024-4	chr15	6586914	6587114	+	897.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011815, intron 1 of 17)	intron (NM_011815, intron 1 of 17)	7167.0	NM_011815	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118242854-4	chr11	118242737	118242937	+	817.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	5755.0	NM_001112699	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-80147885-2	chr11	80147785	80147985	+	877.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5732.0	NM_183275	68550.0	Mm.18466	NM_183275	ENSMUSG00000046909	Tefm	1110002N22Rik	transcription elongation factor, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-75086839-4	chr15	75086765	75086965	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25072.0	NM_001357693	100041546.0	Mm.482110	NM_001099217	ENSMUSG00000022584	Ly6c2	Ly-6C.2|Ly-6C2	lymphocyte antigen 6 complex, locus C2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-39538430-4	chr6	39538337	39538537	+	968.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172477, intron 1 of 18)	intron (NM_172477, intron 1 of 18)	19397.0	NM_172477	209773.0	Mm.440021	NM_172477	ENSMUSG00000038456	Dennd2a	B930096L08Rik|C130031G22|mKIAA1277	DENN/MADD domain containing 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3908087-4	chr19	3908002	3908202	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001136091)	promoter-TSS (NM_001136091)	-969.0	NM_001136091	27060.0	Mm.271689	NM_016921	ENSMUSG00000001750	Tcirg1	ATP6N1C|ATP6a3|Atp6i|OC-116|OPTB1|Stv1|TIRC7|Vph1|oc	T cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 protein A3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-114621045-2	chr5	114620925	114621125	+	830.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37396.0	NM_022017	63873.0	Mm.266450	NM_022017	ENSMUSG00000014158	Trpv4	0610033B08Rik|OTRPC4|Trp12|VR-OAC|VRL-2|VROAC	transient receptor potential cation channel, subfamily V, member 4	protein-coding	0.919941503775351	0.788219688627991	0.774294163596839	1.26652526446229	1.60170577238535	1.50885062319979	0.991680103298371	1.78220715576814	2.37231893066512	0.0886127140846518	0.458748435753151
Merged-chr2-91132880-2	chr2	91132780	91132980	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008653, exon 24 of 32)	exon (NM_008653, exon 24 of 32)	14736.0	NM_008653	17868.0	Mm.10728	NM_008653	ENSMUSG00000002100	Mybpc3	-	myosin binding protein C, cardiac	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-40940256-1	chr13	40940156	40940356	+	738.0	f0_balb.idr	intron (NM_133219, intron 1 of 2)	intron (NM_133219, intron 1 of 2)	22622.0	NM_133219	14538.0	Mm.314757	NM_008105	ENSMUSG00000021360	Gcnt2	5330430K10Rik|IGnT|IGnTA|IGnTB|IGnTC	glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-111527389-2	chr8	111527289	111527489	+	830.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5282.0	NM_176923	319481.0	Mm.247294	NM_176923	ENSMUSG00000031959	Wdr59	5430401O09Rik|Cdw12	WD repeat domain 59	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-138158057-4	chr5	138157965	138158165	+	826.016663	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2321.0	NM_019747	56314.0	Mm.19274	NM_019747	ENSMUSG00000037007	Zfp113	4732456B05Rik|mKIAA4229	zinc finger protein 113	protein-coding	1.02270636725955	1.29136219445059	0.649110010808084	0.958707126656468	1.13472004795532	0.660602618432217	0.838802489781067	1.30371493911301	0.0584638398526652	0.968421546180611	0.998431161219273
Merged-chr10-95507494-2	chr10	95507394	95507594	+	707.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-5545.0	NM_001359477	67270.0	Mm.30008	NM_026065	ENSMUSG00000062981	Mrpl42	2700009F22Rik|2900055D03Rik|D10Ertd322e|HSPC204|L31mt|L42mt|MRP-L31|MRP-L42|MRP-S32|PTD007|Rpml31|S32mt	mitochondrial ribosomal protein L42	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-96593291-4	chr15	96593250	96593450	+	984.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166456, intron 4 of 15)	intron (NM_001166456, intron 4 of 15)	48612.0	NM_134086	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-62132810-4	chr10	62132717	62132917	+	876.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009719)	promoter-TSS (NM_009719)	-273.0	NM_009719	11925.0	Mm.57236	NM_009719	ENSMUSG00000044312	Neurog3	Atoh5|Math4B|bHLHa7|ngn3	neurogenin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-17754626-3	chr6	17754534	17754734	+	928.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022332, intron 1 of 15)	intron (NM_022332, intron 1 of 15)	5464.0	NM_001083315	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191179409-2	chr1	191179309	191179509	+	897.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007498, intron 1 of 3)	intron (NM_007498, intron 1 of 3)	3924.0	NM_007498	11910.0	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-30236599-4	chr16	30236520	30236720	+	879.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER5B|DNA|hAT-Charlie	30912.0	NM_027904	71756.0	Mm.290614	NM_027904	ENSMUSG00000023176	Cpn2	1300018K11Rik	carboxypeptidase N, polypeptide 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101262857-2	chr11	101262757	101262957	+	870.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_175638, exon 2 of 19)	exon (NM_175638, exon 2 of 19)	2290.0	NM_175638	69847.0	Mm.23656	NM_175638	ENSMUSG00000035112	Wnk4	2010002J11Rik|Pha2b|Prkwnk4	WNK lysine deficient protein kinase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141395028-4	chr7	141394928	141395128	+	965.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011528, intron 1 of 7)	intron (NM_011528, intron 1 of 7)	2868.0	NM_011528	21351.0	Mm.29182	NM_011528	ENSMUSG00000025503	Taldo1	-	transaldolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-113695929-4	chr6	113695831	113696031	+	957.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_172161)	TTS (NM_172161)	-1119.0	NM_001347356	381801.0	Mm.333322	NM_001033463	ENSMUSG00000056952	Tatdn2	AI646012|mKIAA0218	TatD DNase domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-105844414-3	chr5	105844369	105844569	+	588.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32099.0	NR_030777	54367.0	Mm.248876	NM_018759	ENSMUSG00000029290	Zfp326	5730470H14Rik|ZAN75|Znf326	zinc finger protein 326	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-131505910-4	chr2	131505805	131506005	+	879.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177840, intron 1 of 3)	intron (NM_001177840, intron 1 of 3)	14043.0	NM_001177838	228608.0	Mm.136586	NM_145533	ENSMUSG00000027333	Smox	B130066H01Rik|PAO|PAOh1|SMO	spermine oxidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-41275021-3	chr12	41274916	41275116	+	814.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053122, intron 4 of 6)	intron (NM_053122, intron 4 of 6)	211041.0	NM_001271708	16981.0	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-58167859-4	chr2	58167764	58167964	+	878.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045895, intron 2 of 3)	intron (NR_045895, intron 2 of 3)	3890.0	NR_045895	100042926.0	Mm.446515	NR_045895	ENSMUSG00000086862	Gm13546	-	predicted gene 13546	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47510021-2	chr17	47509921	47510121	+	832.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081635, intron 1 of 6)	intron (NM_001081635, intron 1 of 6)	4970.0	NM_001081635	12445.0	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-120446603-3	chr2	120446500	120446700	+	956.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172672, intron 17 of 23)	intron (NM_172672, intron 17 of 23)	-16993.0	NM_001177799	12335.0	Mm.458021	NM_007601	ENSMUSG00000079110	Capn3	AI323605|Capa-3|Capa3|Lp82|p94	calpain 3	protein-coding	3.16890561330989	2.28503531772799	2.21149301335051	2.75644078754896	2.88156367011377	2.60584475335184	2.85556731334322	2.44582317112987	0.0592941741240106	0.93611264743419	0.998431161219273
Merged-chr2-145823007-4	chr2	145822929	145823129	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028724, intron 4 of 12)	intron (NM_028724, intron 4 of 12)	36913.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-53332303-2	chr11	53332203	53332403	+	547.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_026479, exon 4 of 4)	exon (NM_026479, exon 4 of 4)	7614.0	NM_026479	67966.0	Mm.288072	NM_026479	ENSMUSG00000018239	Zcchc10	2410141K03Rik|AA675321|D11Ertd416e	zinc finger, CCHC domain containing 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-29951677-2	chr5	29951577	29951777	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61437.0	NM_001314054	16193.0	Mm.1019	NM_031168	ENSMUSG00000025746	Il6	Il-6	interleukin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-50240532-5	chr11	50240455	50240655	+	950.2000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2023.0	NR_132733	17001.0	Mm.245151	NM_008521	ENSMUSG00000020377	Ltc4s	-	leukotriene C4 synthase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-172512422-2	chr1	172512325	172512525	+	969.125	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8705.0	NM_027972	71870.0	Mm.78373	NM_027972	ENSMUSG00000026546	Cfap45	1700028D05Rik|Ccdc19|Nesg1	cilia and flagella associated protein 45	protein-coding	0.91946279283356	1.8454262649646	0.530722524909069	0.778743371135705	0.73113983693354	2.51588320449218	0.535726531515262	0.515975257264605	0.822280586263001	0.578999745394044	0.965985075107763
Merged-chr7-19094017-4	chr7	19093904	19094104	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011383)	promoter-TSS (NM_011383)	-540.0	NM_011383	20475.0	Mm.3410	NM_011383	ENSMUSG00000040841	Six5	Dmahp|MDMAHP|TrexBF	sine oculis-related homeobox 5	protein-coding	5.96731599541641	5.84628147044386	6.4658935018406	6.11724489147636	6.22954212122438	6.27362639760445	6.72550027290904	6.24282795365489	0.285910480769865	0.212942258586191	0.702662601352343
Merged-chr8-126768804-2	chr8	126768704	126768904	+	983.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-80216.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-125430976-3	chr1	125430882	125431082	+	931.0833130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205386, intron 2 of 12)	B1F1|SINE|Alu	4745.0	NM_001205386	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-105775884-3	chr3	105775746	105775946	+	698.722229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145541, intron 1 of 7)	MTA_Mm|LTR|ERVL-MaLR	25535.0	NM_145541	109905.0	Mm.101922	NM_145541	ENSMUSG00000068798	Rap1a	AI848598|G-22K|Krev-1|Rap1	RAS-related protein 1a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41475014-4	chr19	41474924	41475124	+	874.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-50228.0	NM_001326287	627352.0	Mm.395111	NM_001326287		Morf4l1b	EG627352|Gm6747	mortality factor 4 like 1B	protein-coding	1.28388513125659	1.0868020306355	0.691944506438141	1.46120666228641	1.38402394879017	0.705305029579066	0.694362254455148	1.15529347205544	-0.595131874975834	0.695045868961329	0.997870549741095
Merged-chr2-117186268-3	chr2	117186154	117186354	+	869.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	1127.0	NR_030440	732489.0		NR_030440	ENSMUSG00000076376	Mir674	Mirn674|mir-674|mmu-mir-674	microRNA 674	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-92181867-2	chr1	92181767	92181967	+	970.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1526.0	NM_207225	208727.0	Mm.318567	NM_207225	ENSMUSG00000026313	Hdac4	4932408F19Rik|HD4	histone deacetylase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98839640-2	chr11	98839540	98839740	+	622.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080925, intron 1 of 14)	intron (NM_001080925, intron 1 of 14)	2855.0	NM_001080925	268480.0	Mm.340766	NM_001080925	ENSMUSG00000038020	Rapgefl1	B230105J10	Rap guanine nucleotide exchange factor (GEF)-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-31285428-4	chr6	31285289	31285489	+	931.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040261, intron 3 of 4)	L2c|LINE|L2	65038.0	NR_040259	73652.0	Mm.441297	NR_040257	ENSMUSG00000087380	2210408F21Rik	-	RIKEN cDNA 2210408F21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-16379518-4	chr14	16379416	16379616	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009409, intron 1 of 35)	L1M4|LINE|L1	14310.0	NM_009409	21974.0	Mm.130362	NM_009409	ENSMUSG00000017485	Top2b	D230016L12Rik|Top-2	topoisomerase (DNA) II beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-4174956-3	chr10	4174845	4175045	+	896.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38175.0	NR_152620	102632515.0	Mm.416995	NR_152620	ENSMUSG00000111266	Gm30570	-	predicted gene, 30570	ncRNA	0.265204109980457	0.291466232263636	0.282954543665389	0.276327741095516	0.432768350271559	0.844175997624079	1.22344123290334	0.874308015191889	4.45278435542807	0.0153295451842999	1
Merged-chr10-70199980-4	chr10	70199882	70200082	+	887.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-4682.0	NM_001304739	69563.0	Mm.64672	NM_001304739	ENSMUSG00000019933	Mrln	2310015B20Rik|Linc-RAM|Mln	myoregulin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-25320833-4	chr17	25320742	25320942	+	911.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053260, intron 3 of 5)	intron (NM_053260, intron 3 of 5)	2188.0	NM_053260	114662.0	Mm.207082	NM_053260	ENSMUSG00000034039	Prss29	D19363|Isp2|mISP-2	protease, serine 29	protein-coding	0.684020958310553	1.07696130353898	0.408698230262192	0.401816156043855	1.25325946636406	0.419530461396273	0.410656601105839	0.987601982439052	0.757677883811623	0.673829883608402	1
Merged-chr16-96151598-2	chr16	96151498	96151698	+	866.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_207301, intron 1 of 4)	intron (NM_207301, intron 1 of 4)	6179.0	NM_207301	71446.0	Mm.255063	NM_207301	ENSMUSG00000023147	Wrb	5530402J05Rik|C030018G21Rik|Chd5	tryptophan rich basic protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-175691884-1	chr1	175691784	175691984	+	846.3333130000001	f0_balb.idr	intron (NM_010098, intron 1 of 3)	intron (NM_010098, intron 1 of 3)	748.0	NM_010098	13603.0	Mm.32744	NM_010098	ENSMUSG00000026525	Opn3	ERO|Ecpn	opsin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-5845836-4	chr13	5845731	5845931	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12261.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-110944871-4	chr13	110944759	110944959	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41013.0	NR_131194	102636142.0	Mm.417611	NR_131194		4930526H09Rik	-	RIKEN cDNA 4930526H09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119263511-1	chr11	119263411	119263611	+	557.0	f1_balb.idr	intron (NM_175430, intron 18 of 18)	intron (NM_175430, intron 18 of 18)	-4452.0	NM_001159324	14387.0	Mm.4793	NM_008064	ENSMUSG00000025579	Gaa	E430018M07Rik	glucosidase, alpha, acid	protein-coding	-1.33793447301127	-1.30826030895896	-1.31828845321677	-1.32652586948969	-0.950077789383471	-1.30608716826488	-1.15822981092724	-1.32505137591525	2.29714043412452	0.496446034091415	1
Merged-chr10-7064310-4	chr10	7064215	7064415	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41130.0	NM_001033391	320495.0	Mm.331674	NM_001033391	ENSMUSG00000064065	Ipcef1	A130090K04Rik	interaction protein for cytohesin exchange factors 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-61578583-4	chr2	61578489	61578689	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011529)	promoter-TSS (NM_011529)	3.0	NM_011529	21353.0	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-6456440-4	chr18	6456354	6456554	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007935, intron 2 of 13)	intron (NM_007935, intron 2 of 13)	34192.0	NR_035446	100316773.0		NR_035446	ENSMUSG00000084514	Mir1893	Mirn1893|mmu-mir-1893	microRNA 1893	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-34960301-1	chr4	34960201	34960401	+	602.0	f0_balb.idr	intron (NM_178061, intron 3 of 3)	intron (NM_178061, intron 3 of 3)	-48820.0	NR_040652	73696.0	Mm.1361	NR_040652	ENSMUSG00000085824	Platr9	2410114N07Rik	pluripotency associated transcript 9	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-17543444-2	chr12	17543344	17543544	+	694.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1429.0	NM_013614	18263.0	Mm.34102	NM_013614	ENSMUSG00000011179	Odc1	ODC	ornithine decarboxylase, structural 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-103321905-5	chr4	103321708	103321908	+	904.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_025909, exon 3 of 9)	exon (NM_025909, exon 3 of 9)	7962.0	NM_025909	67013.0	Mm.30021	NM_025909	ENSMUSG00000035069	Oma1	2010001O09Rik|MPRP-1|ZMPOMA1	OMA1 zinc metallopeptidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114721493-2	chr11	114721393	114721593	+	707.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_053273)	TTS (NM_053273)	-5919.0	NM_001034878	432611.0	Mm.212764	NM_001034878	ENSMUSG00000034706	Dnaic2	C030015H18Rik|Dnai2|Gm728|b2b3405Clo	dynein, axonemal, intermediate chain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-115852448-2	chr6	115852348	115852548	+	946.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010774, intron 1 of 7)	intron (NM_010774, intron 1 of 7)	893.0	NM_010774	17193.0	Mm.259308	NM_010774	ENSMUSG00000030322	Mbd4	Med1	methyl-CpG binding domain protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-9468847-4	chr14	9468753	9468953	+	925.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28B|LTR|ERVL	-415242.0	NR_030680	100042415.0	Mm.235938	NR_030680	ENSMUSG00000089686	Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	2.18603947758415	2.71264261752492	2.36468078387259	3.07914873709707	2.44290604157832	2.95082791838852	2.52040553713095	2.94384565785719	0.19843043525134	0.787456745583005	0.998431161219273
Merged-chr17-34301028-1	chr17	34300928	34301128	+	642.0	f1_c57bl6.idr	Intergenic	Intergenic	-4839.0	NM_010382	14969.0	Mm.22564	NM_010382	ENSMUSG00000060586	H2-Eb1	Eb|H-2Eb|H2Eb|Ia-4|Ia4	histocompatibility 2, class II antigen E beta	protein-coding	3.75470140678046	3.34337456878599	3.88588716900458	2.68601773404568	3.09102081467817	3.6341859553562	3.04523566424255	3.05731027578707	-0.435627741805875	0.461822425359592	0.921194606787634
Merged-chr6-72109714-4	chr6	72109618	72109818	+	924.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011375, intron 1 of 6)	intron (NM_011375, intron 1 of 6)	12110.0	NM_011375	20454.0	Mm.38248	NM_011375	ENSMUSG00000056091	St3gal5	3S-T|Siat9|[a]2	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-61314136-2	chr18	61314036	61314236	+	937.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_133249, intron 3 of 11)	intron (NM_133249, intron 3 of 11)	83764.0	NR_029879	723889.0		NR_029879	ENSMUSG00000105200	Mir378a	Mir378|Mirn378|mmu-mir-378|mmu-mir-378a	microRNA 378a	ncRNA	3.52093875734511	3.46756552956527	1.57804167612392	3.09301014845508	3.54897624416632	3.49277893804355	1.87919235043582	3.1092928860865	0.0758634283728135	0.922701296628106	0.998431161219273
Merged-chr16-12044064-3	chr16	12043949	12044149	+	603.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028277, intron 2 of 4)	URR1B|DNA|hAT-Charlie	59936.0	NM_001174086	72555.0	Mm.310139	NM_028277	ENSMUSG00000022494	Shisa9	2700045P11Rik|Ckamp44	shisa family member 9	protein-coding	3.24819712770196	1.32611952020141	2.9511053894765	2.78159286277221	2.37313315805344	1.33584111101582	3.19748559927473	1.25139104562767	-0.823103657879358	0.640949791833729	0.982599433509505
Merged-chr5-134640154-2	chr5	134640054	134640254	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001312867)	promoter-TSS (NM_001312867)	-745.0	NM_033561	22384.0	Mm.27955	NM_033561	ENSMUSG00000040731	Eif4h	AU018978|D5Ertd355e|E430026L18Rik|Ef4h|Wbscr1|Wscr1|eIF-4H	eukaryotic translation initiation factor 4H	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115603894-4	chr11	115603796	115603996	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025305)	promoter-TSS (NM_025305)	20.0	NM_001252067	260302.0	Mm.119479	NM_173048	ENSMUSG00000020740	Gga3	C230037M19Rik|mKIAA0154	golgi associated, gamma adaptin ear containing, ARF binding protein 3	protein-coding	1.42474420862764	1.86170772547948	0.857830181495029	1.91054927161649	1.31636411801492	1.76414934558622	0.861660626095897	0.846645950227604	-1.08814835962918	0.425397658407291	0.901356553382266
Merged-chr11-114891956-2	chr11	114891856	114892056	+	673.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359812, intron 2 of 7)	B4|SINE|B4	1915.0	NM_170758	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-79629506-2	chr3	79629396	79629596	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_025794)	promoter-TSS (NM_025794)	417.0	NM_029482	75939.0	Mm.221520	NM_029482	ENSMUSG00000027811	4930579G24Rik	-	RIKEN cDNA 4930579G24 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-90040515-4	chr9	90040413	90040613	+	966.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-13754.0	NM_007801	13036.0	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	1.96457032916016	1.49528041966878	2.94901133737444	1.94582667705446	1.3473406247072	1.21880503051412	2.90699729035549	2.21236065293066	-0.197407928168026	0.850852370342203	0.998431161219273
Merged-chr17-71132266-2	chr17	71132165	71132365	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-51267.0	NM_001357791	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	0.980037728764914	0.423244165469285	1.00152551300857	0.40921935538676	0.900255372305081	0.425020382214095	1.01317780791643	0.410290711615806	-0.107318679112595	0.952976963890955	1
Merged-chr4-117188867-1	chr4	117188767	117188967	+	580.0	f0_c57.idr	Intergenic	Intergenic	-6243.0	NM_134471	73804.0	Mm.247651	NM_134471	ENSMUSG00000028678	Kif2c	4930402F02Rik|ESTM5|Knsl6|MCAK|X83316	kinesin family member 2C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95229994-4	chr3	95229928	95230128	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038708, intron 1 of 4)	intron (NM_001038708, intron 1 of 4)	1085.0	NM_001038708	57912.0	Mm.28189	NM_172395	ENSMUSG00000046722	Cdc42se1	1300002M12Rik|AW558204|Cdcse1|SCIP1|Spec1	CDC42 small effector 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-145245451-2	chr4	145245351	145245551	+	833.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011610, intron 1 of 9)	intron (NM_011610, intron 1 of 9)	1419.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-103170117-2	chr15	103170017	103170217	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6833.0	NM_027885	71726.0	Mm.254820	NM_027885	ENSMUSG00000036061	Smug1	1200013B09Rik|A930006H09Rik|C85220	single-strand selective monofunctional uracil DNA glycosylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-60605025-2	chr13	60604925	60605125	+	880.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	B2_Mm2|SINE|B2	2814.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4791137-2	chr16	4791037	4791237	+	554.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358082)	promoter-TSS (NM_001358082)	-845.0	NM_001358082	66626.0	Mm.157648	NM_025670	ENSMUSG00000004071	Cdip1	2700048O17Rik|5730403B10Rik|AU018521|AW742692|CDIP	cell death inducing Trp53 target 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-38346085-2	chr16	38345985	38346185	+	717.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001017429)	promoter-TSS (NM_001017429)	-914.0	NM_001017429	12856.0	Mm.27396	NM_001017429	ENSMUSG00000046516	Cox17	AI037035	cytochrome c oxidase assembly protein 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-48961873-2	chr13	48961773	48961973	+	572.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033268, intron 1 of 17)	intron (NM_001033268, intron 1 of 17)	5955.0	NM_001033268	218236.0	Mm.426571	NM_001033268	ENSMUSG00000038014	Fam120a	C9orf10|Ossa	family with sequence similarity 120, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-82900307-4	chr10	82900199	82900399	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	33673.0	NM_025499	66341.0	Mm.443284	NM_025499	ENSMUSG00000109864	Eid3	1700027M21Rik|NS4EB	EP300 interacting inhibitor of differentiation 3	protein-coding	6.84968377022608	6.85119134478446	6.96589651936858	7.06149529238201	6.38762615616915	6.01216249932822	6.4565095491058	6.5232948022293	-0.61008138100398	0.00132475539491718	0.0244780521995119
Merged-chr8-4404415-3	chr8	4404322	4404522	+	960.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	54834.0	NM_009138	20300.0	Mm.7275	NM_009138	ENSMUSG00000023235	Ccl25	A130072A22Rik|AI852536|CKb15|Scya25|TECK	chemokine (C-C motif) ligand 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-113617433-4	chr13	113617324	113617524	+	989.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_130796, exon 1 of 2)	exon (NM_130796, exon 1 of 2)	1140.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-136085016-4	chr5	136084915	136085115	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039103, intron 1 of 19)	intron (NM_001039103, intron 1 of 19)	1099.0	NM_001039103	54153.0	Mm.290655	NM_133914	ENSMUSG00000004952	Rasa4	AA793972|AW112107|BB079060|CAPRI|GAPL	RAS p21 protein activator 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65555260-2	chr9	65555160	65555360	+	954.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_153119, exon 6 of 6)	3' UTR (NM_153119, exon 6 of 6)	24827.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-69749699-4	chr8	69749593	69749793	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001200023, intron 1 of 3)	CpG	269.0	NM_001200023	620419.0	Mm.460423	NM_001200023	ENSMUSG00000092260	Zfp963	-	zinc finger protein 963	protein-coding	5.58722148735013	5.61600499781678	5.72090278016852	6.01741760224701	5.40795078345974	5.55923520122753	5.33546256058991	5.48513947612926	-0.338263265495467	0.190946604181677	0.669546561020494
Merged-chr11-69118895-4	chr11	69118810	69119010	+	891.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1543.0	NM_033041	84653.0	Mm.98505	NM_033041	ENSMUSG00000023781	Hes7	bHLHb37	hes family bHLH transcription factor 7	protein-coding	3.00669951212533	2.41518293996044	2.58917635380044	2.40455534762218	3.13302901696732	2.43193054056278	2.04885061792696	2.63678164375983	0.00799914458615083	0.991706931938367	0.998431161219273
Merged-chr15-95764339-2	chr15	95764239	95764439	+	566.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12748.0	NR_131148	629300.0	Mm.247258	NR_131148	ENSMUSG00000115699	Gm6961	EG629300	predicted gene 6961	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-84387625-2	chr12	84387525	84387725	+	565.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001026214, intron 6 of 15)	intron (NM_001026214, intron 6 of 15)	13309.0	NM_001286058	12499.0	Mm.10211	NM_007647	ENSMUSG00000021236	Entpd5	AI196558|AI987697|Cd39l4|ER-UDPase|NTPDase-5|NTPDase5|Pcph|mNTPase	ectonucleoside triphosphate diphosphohydrolase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-138458297-4	chr1	138458176	138458376	+	948.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	161481.0	NM_021605	59125.0	Mm.143817	NM_021605	ENSMUSG00000026393	Nek7	2810460C19Rik|AU020186	NIMA (never in mitosis gene a)-related expressed kinase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191277081-2	chr1	191276981	191277181	+	781.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41037.0	NM_025424	66208.0	Mm.46444	NM_025424	ENSMUSG00000037499	Nenf	1110060M21Rik|SCIRP10|Spuf	neuron derived neurotrophic factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-20493888-2	chr13	20493781	20493981	+	624.0	f0_balb.idr|f0_c57.idr	intron (NM_198093, intron 1 of 6)	intron (NM_198093, intron 1 of 6)	20891.0	NM_198093	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-52306075-4	chr6	52305975	52306175	+	876.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-7423.0	NM_007966	14028.0	Mm.389754	NM_007966	ENSMUSG00000005503	Evx1	Evx-1	even-skipped homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115490089-6	chr5	115490050	115490250	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-5666.0	NM_133760	75387.0	Mm.332616	NM_133760	ENSMUSG00000029524	Sirt4	4930596O17Rik	sirtuin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-51908663-2	chr1	51908563	51908763	+	605.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010863, intron 1 of 29)	B1_Mur4|SINE|Alu	7315.0	NM_001161817	17912.0	Mm.3390	NM_010863	ENSMUSG00000018417	Myo1b	AA406997|MIH-L|MMIa	myosin IB	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141131274-4	chr7	141131183	141131383	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013782)	promoter-TSS (NM_013782)	-3.0	NM_013782	27388.0	Mm.293591	NM_013782	ENSMUSG00000025495	Ptdss2	AI481134|AI988017|PSS2	phosphatidylserine synthase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-30835938-3	chr16	30835838	30836038	+	915.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER77|LTR|ERVL	236215.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-90961781-4	chr8	90961667	90961867	+	831.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177224, intron 4 of 39)	intron (NM_177224, intron 4 of 39)	29518.0	NM_001310530	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	3.26375796766554	3.74628955225095	2.45845872129838	2.70341454718903	4.02947570309845	3.06319957971827	3.86019315174026	4.41400798905911	1.19506133283106	0.0429097402946433	0.296902098454132
Merged-chr10-67284286-2	chr10	67284186	67284386	+	752.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001036293, intron 1 of 3)	MIR|SINE|MIR	995.0	NM_001036293	641340.0	Mm.136223	NM_001036293	ENSMUSG00000075000	Nrbf2	NRBF-2	nuclear receptor binding factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-11441992-4	chr2	11441882	11442082	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43482.0	NR_040615	77543.0	Mm.490670	NR_040615	ENSMUSG00000102674	8030442B05Rik	-	RIKEN cDNA 8030442B05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83063351-4	chr11	83063250	83063450	+	893.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1762.0	NM_011408	20556.0	Mm.278689	NM_011408	ENSMUSG00000072620	Slfn2	Shlf2	schlafen 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-84107699-4	chr17	84107604	84107804	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29044.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-135724319-3	chr1	135724206	135724406	+	600.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360782, intron 1 of 5)	intron (NM_001360782, intron 1 of 5)	4243.0	NM_001360782	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127636176-2	chr10	127636076	127636276	+	888.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6810.0	NM_009284	20852.0	Mm.121721	NM_009284	ENSMUSG00000002147	Stat6	-	signal transducer and activator of transcription 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-124845336-1	chr8	124845236	124845436	+	789.0	f0_balb.idr	intron (NM_025615, intron 2 of 6)	intron (NM_025615, intron 2 of 6)	17693.0	NM_025615	66523.0	Mm.436864	NM_025615	ENSMUSG00000031984	2810004N23Rik	3110004G14Rik|Ayu21-55|Gt(pU21)55Imeg|GtAyu21-55	RIKEN cDNA 2810004N23 gene	protein-coding	0.901632832624046	0.965824503829497	1.37250860341096	1.48900721404827	1.27674287968965	1.75534797407426	2.02965689588149	2.27823049259593	2.32088778486637	0.0589645232530312	0.358750684579041
Merged-chr15-44624997-3	chr15	44624904	44625104	+	819.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357690, intron 2 of 6)	B3|SINE|B2	5363.0	NM_019480	55960.0	Mm.287896	NM_019480	ENSMUSG00000022339	Ebag9	AI835379|Rcas1	estrogen receptor-binding fragment-associated gene 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-114874384-7	chr6	114874288	114874488	+	972.2958980000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356371, intron 3 of 5)	intron (NM_001356371, intron 3 of 5)	47433.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-31040301-2	chr17	31040201	31040401	+	912.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17393.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-69271022-4	chr8	69270940	69271140	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172491)	promoter-TSS (NM_172491)	-40.0	NM_172491	211135.0	Mm.294970	NM_172491	ENSMUSG00000079038	D130040H23Rik	-	RIKEN cDNA D130040H23 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-6459681-4	chr2	6459497	6459697	+	981.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	106861.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-16248717-4	chr14	16248622	16248822	+	959.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001362433)	promoter-TSS (NM_001362433)	454.0	NM_001359882	71147.0	Mm.197960	NM_027695	ENSMUSG00000021786	Oxsm	4933425A18Rik|C80494	3-oxoacyl-ACP synthase, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-37419764-4	chr6	37419679	37419879	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178661, intron 1 of 11)	intron (NM_178661, intron 1 of 11)	22369.0	NM_178661	208647.0	Mm.169929	NM_178661	ENSMUSG00000038648	Creb3l2	BBF2H7|C530025K05Rik|SCIRR69	cAMP responsive element binding protein 3-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46444448-3	chr19	46444344	46444544	+	906.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025391, intron 3 of 11)	intron (NM_001025391, intron 3 of 11)	47548.0	NM_015752	24069.0	Mm.41210	NM_015752	ENSMUSG00000025231	Sufu	Su(fu)	SUFU negative regulator of hedgehog signaling	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167064888-2	chr2	167064788	167064988	+	563.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028540)	promoter-TSS (NR_028540)	-405.0	NR_028540	100217443.0		NR_028540		Snord12	MBII-99	small nucleolar RNA, C/D box 12	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-149451712-3	chr3	149451629	149451829	+	839.8666380000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	176992.0	NR_040591	381482.0	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA	1.22385360931967	2.63041199800065	1.69227383938319	1.32324032923172	3.34974964513592	3.76563445717097	4.25223268824981	4.04860291345985	3.82512115199943	2.34011650063899e-06	0.000132437347993711
Merged-chr4-149701034-2	chr4	149700987	149701187	+	768.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001029837, intron 1 of 23)	MTC-int|LTR|ERVL-MaLR	542.0	NM_001029837	18707.0	Mm.229108	NM_008840	ENSMUSG00000039936	Pik3cd	2410099E07Rik|2610208K16Rik|AW545373|p110delta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding	2.30805430943058	2.13276065071818	2.40926729486533	2.34097923227421	2.03802441335786	1.60289866603596	1.31323254756667	2.60977348225273	-0.720141259832872	0.452617363788307	0.91869698872066
Merged-chr11-100736217-4	chr11	100736110	100736310	+	769.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305003, intron 1 of 5)	intron (NM_001305003, intron 1 of 5)	2005.0	NM_024456	19345.0	Mm.29829	NM_024456	ENSMUSG00000019173	Rab5c	AI326010|Rabl	RAB5C, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70682099-2	chr11	70681999	70682199	+	784.575012	f1_balb.idr|f1_c57bl6.idr	intron (NM_001190379, intron 7 of 20)	intron (NM_001190379, intron 7 of 20)	6006.0	NM_001190376	216874.0	Mm.473726	NM_178116	ENSMUSG00000040712	Camta2	Kiaa0909-hp|mKIAA0909	calmodulin binding transcription activator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-43788487-4	chr13	43788310	43788510	+	811.589294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009856, intron 2 of 4)	intron (NM_009856, intron 2 of 4)	3298.0	NM_001289915	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70892845-3	chr8	70892679	70892879	+	924.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053248)	promoter-TSS (NM_053248)	-22.0	NM_053248	114479.0	Mm.172923	NM_053248	ENSMUSG00000000792	Slc5a5	NIS	solute carrier family 5 (sodium iodide symporter), member 5	protein-coding	3.0680857936823	3.17895413419175	4.15173490813072	2.3677764898655	2.74637694406787	2.71591186798468	1.55508765323213	3.46626897246453	-0.932767672279126	0.225899321294536	0.718288000943067
Merged-chr11-70459484-2	chr11	70459384	70459584	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001348337)	promoter-TSS (NM_001348337)	51.0	NM_001029929	574428.0	Mm.425692	NM_001029929	ENSMUSG00000040829	Zmynd15	-	zinc finger, MYND-type containing 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-52860451-3	chr2	52860413	52860613	+	671.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	2645.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-46993395-3	chr14	46993294	46993494	+	908.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037221, intron 2 of 12)	intron (NM_001037221, intron 2 of 12)	-7946.0	NM_001163433	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	1.4276960127755	1.47847512229426	1.11784964614022	1.61317717717935	1.4397314347721	0.934789313047577	1.12449682339706	1.80629082163808	-0.149328915282126	0.904233703036723	0.998431161219273
Merged-chr9-111120623-2	chr9	111120523	111120723	+	798.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027742, intron 2 of 13)	intron (NM_027742, intron 2 of 13)	2512.0	NM_001164838	71268.0	Mm.302287	NM_027742	ENSMUSG00000032497	Lrrfip2	5133400F20Rik|AI850587	leucine rich repeat (in FLII) interacting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126842068-2	chr8	126841968	126842168	+	987.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-6952.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-108191698-4	chr10	108191602	108191802	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027892, intron 1 of 25)	intron (NM_027892, intron 1 of 25)	29302.0	NM_027892	17931.0	Mm.422959	NM_027892	ENSMUSG00000019907	Ppp1r12a	1200015F06Rik|5730577I22Rik|AA792106|AV099298|D10Ertd625e|Mypt1	protein phosphatase 1, regulatory (inhibitor) subunit 12A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-58630650-4	chr9	58630528	58630728	+	898.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357751, intron 4 of 8)	intron (NM_001357751, intron 4 of 8)	48388.0	NM_001357751	20320.0	Mm.15125	NM_009145	ENSMUSG00000032336	Nptn	AW554172|SDR-1|Sdfr1	neuroplastin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-10358944-2	chr16	10358844	10359044	+	636.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291001, intron 6 of 6)	intron (NM_001291001, intron 6 of 6)	-27659.0	NR_126064	381033.0	Mm.263108	NR_126064	ENSMUSG00000116270	Gm1600	Gm1776	predicted gene 1600	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-45473666-2	chr5	45473566	45473766	+	777.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2c|LINE|L2	-19708.0	NM_024434	66988.0	Mm.286830	NM_024434	ENSMUSG00000039682	Lap3	2410015L10Rik|AA410100|LAP-3|Lap|Lapep|Pep-7|Pep-S|Pep7|Peps	leucine aminopeptidase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-58281746-2	chr9	58281646	58281846	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28582.0	NM_026942	69106.0	Mm.216502	NM_026942	ENSMUSG00000032333	Stoml1	1810015E19Rik|AI847431|SLP1|STORP|UNC24|WPB72	stomatin-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-31544752-2	chr10	31544652	31544852	+	688.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001146349, intron 1 of 5)	MLTR11B|LTR|ERVK	64973.0	NM_001146349	268291.0	Mm.295212	NM_001146349	ENSMUSG00000063760	Rnf217	AU016819|Ibrdc1	ring finger protein 217	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-33185807-2	chr2	33185707	33185907	+	913.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290570, intron 7 of 16)	intron (NM_001290570, intron 7 of 16)	-30154.0	NM_011923	26360.0	Mm.208919	NM_011923	ENSMUSG00000004105	Angptl2	AI593246|AW260363|Arp2	angiopoietin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-33642298-1	chr17	33642198	33642398	+	601.0	f1_c57bl6.idr	intron (NM_001002842, intron 4 of 9)	intron (NM_001002842, intron 4 of 9)	4203.0	NR_028279	378460.0	Mm.272606	NM_001002842	ENSMUSG00000032739	Pram1	AY665714	PML-RAR alpha-regulated adaptor molecule 1	protein-coding	-0.223702720219485	-0.204168868457791	0.814478878256692	0.387283126423996	-0.222465542893003	-0.202749449238425	-0.209100720715876	-0.214568902213217	-4.03633288200961	0.0906706208698369	1
Merged-chr12-36041870-4	chr12	36041756	36041956	+	868.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025359, intron 1 of 5)	intron (NM_025359, intron 1 of 5)	622.0	NM_025359	66109.0	Mm.254663	NM_025359	ENSMUSG00000020577	Tspan13	1100001I23Rik|NET-6|Tm4sf13	tetraspanin 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-121442646-4	chr2	121442651	121442851	+	855.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145973)	promoter-TSS (NM_145973)	-150.0	NM_145973	269344.0	Mm.330522	NM_145973	ENSMUSG00000027246	Ell3	A930015D22Rik	elongation factor RNA polymerase II-like 3	protein-coding	1.13287071647443	2.16599908330793	0.795291649864607	0.779344941900318	1.29292877878448	2.18518299176143	1.04873261208841	1.20791318825056	0.438883586328179	0.740406851365191	0.998431161219273
Merged-chr15-81057899-2	chr15	81057788	81057988	+	674.75	f0_balb.idr|f0_c57.idr	intron (NM_001082536, intron 2 of 13)	G-rich|Low_complexity|Low_complexity	47159.0	NM_153049	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-33777059-2	chr17	33776959	33777159	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_020581, exon 6 of 7)	exon (NM_020581, exon 6 of 7)	4516.0	NM_020581	57875.0	Mm.196189	NM_020581	ENSMUSG00000002289	Angptl4	Arp4|Bk89|Fiaf|Hfarp|Ng27|Pgar|Pgarg|Pp1158	angiopoietin-like 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-40774660-2	chr6	40774560	40774760	+	637.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	112834.0	NM_139296	194357.0	Mm.207087	NM_139296	ENSMUSG00000029885	Moxd2	Dbhl1	monooxygenase, DBH-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-57167182-3	chr17	57167080	57167280	+	757.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17403.0	NM_011617	21948.0	Mm.42228	NM_011617	ENSMUSG00000019489	Cd70	CD27LG|Cd27l|Tnfsf7|Tnlg8a	CD70 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-17992751-2	chr13	17992651	17992851	+	923.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025904, intron 1 of 2)	intron (NM_025904, intron 1 of 2)	600.0	NM_025904	67008.0	Mm.252918	NM_025904	ENSMUSG00000075054	Yae1d1	1600012F09Rik	Yae1 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-51558481-2	chr3	51558381	51558581	+	873.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_080793, intron 1 of 7)	ID_B1|SINE|B4	-1276.0	NR_033624	100039684.0	Mm.387178	NR_033624		5031434O11Rik	AI481280|Gm2370	RIKEN cDNA 5031434O11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-9865453-2	chr3	9865353	9865553	+	549.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31774.0	NM_001195031	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5806128-4	chr17	5805921	5806121	+	939.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6531.0	NR_045080	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-41478564-2	chr10	41478464	41478664	+	890.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_138315, exon 3 of 24)	exon (NM_138315, exon 3 of 24)	554.0	NM_001358839	171580.0	Mm.290431	NM_138315	ENSMUSG00000019823	Mical1	MICAL|MICAL-1|Nical	microtubule associated monooxygenase, calponin and LIM domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127965007-2	chr7	127964907	127965107	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-2472.0	NM_001347649	233908.0	Mm.277680	NM_139149	ENSMUSG00000030795	Fus	D430004D17Rik|D930039C12Rik|Fus1|Tls	fused in sarcoma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24797260-3	chr17	24797179	24797379	+	706.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-7103.0	NM_029197	75178.0	Mm.52592	NM_029197	ENSMUSG00000024155	Meiob	4930528F23Rik|MLZ-675	meiosis specific with OB domains	protein-coding	1.77340121052735	1.05864787084919	1.93045217609777	1.66177249753718	1.59037406039957	1.06250864710724	1.8413170449607	1.67037733322199	-0.2448503912497	0.83655386238673	0.998431161219273
Merged-chr11-17003030-4	chr11	17002910	17003110	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019549, intron 1 of 9)	intron (NM_019549, intron 1 of 9)	5708.0	NM_019549	56193.0	Mm.98232	NM_019549	ENSMUSG00000020120	Plek	2010300B13Rik	pleckstrin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-33524110-4	chr17	33524002	33524202	+	967.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172619)	promoter-TSS (NM_172619)	17.0	NM_001329147	224697.0	Mm.29304	NM_172619	ENSMUSG00000024299	Adamts10	9430006O18|AW045948|Adam-ts10|Adamts-10|Znmp	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-83696890-2	chr8	83696762	83696962	+	934.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177262, intron 1 of 21)	intron (NM_177262, intron 1 of 21)	2317.0	NM_177262	320795.0	Mm.213000	NM_177262	ENSMUSG00000057672	Pkn1	DBK|F730027O18Rik|PAK1|PRK1|Pkn|Prkcl1|Stk3	protein kinase N1	protein-coding	2.87518621279579	1.47336050721253	3.44098888557506	2.59179771636387	2.74818939479217	1.48317944651185	2.89369917701428	2.60566501040435	-0.455872766635907	0.612215737754394	0.976300982470244
Merged-chr19-12430630-3	chr19	12430528	12430728	+	740.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_019540, exon 2 of 2)	3' UTR (NM_019540, exon 2 of 2)	2723.0	NM_019540	56093.0	Mm.285849	NM_019540	ENSMUSG00000040065	Pfpl	Epcs5|Epcs50	pore forming protein-like	protein-coding	-0.462568745007129	0.423388656171049	-0.452781542840528	-0.456449457143365	-0.0475509661640267	-0.44698313076835	-0.451735458312232	-0.455807707016715	-1.47303757300298	0.582784000060011	1
Merged-chr3-51427969-4	chr3	51427863	51428063	+	801.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053089, intron 1 of 19)	intron (NM_053089, intron 1 of 19)	11947.0	NM_053089	74838.0	Mm.275281	NM_053089	ENSMUSG00000063273	Naa15	5730450D16Rik|6330400I15|ASTBDN|Narg1|Tbdn-1|mNAT1	N(alpha)-acetyltransferase 15, NatA auxiliary subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-28485451-4	chr6	28485321	28485521	+	716.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019776, intron 1 of 23)	L2a|LINE|L2	5073.0	NM_019776	56463.0	Mm.439987	NM_019776	ENSMUSG00000001424	Snd1	AL033314|Tudor-SN	staphylococcal nuclease and tudor domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-61312957-2	chr10	61312857	61313057	+	618.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15121.0	NM_011073	18646.0	Mm.240313	NM_011073	ENSMUSG00000037202	Prf1	Pfn|Pfp|Prf-1	perforin 1 (pore forming protein)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91485921-4	chr2	91485816	91486016	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172668, exon 17 of 38)	exon (NM_172668, exon 17 of 38)	28385.0	NM_001145857	228357.0	Mm.275149	NM_172668	ENSMUSG00000027253	Lrp4	6430526J12Rik|D230026E03|Megf7|mdig	low density lipoprotein receptor-related protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-126499906-4	chr2	126499821	126500021	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359975)	promoter-TSS (NM_001359975)	-74.0	NM_001359975	241633.0	Mm.222235	NM_001080944	ENSMUSG00000060131	Atp8b4	Im	ATPase, class I, type 8B, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117302041-4	chr10	117301926	117302126	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9158.0	NM_013590	17110.0	Mm.177539	NM_013590	ENSMUSG00000069515	Lyz1	Lyz|Lyzf3|Lzp-s	lysozyme 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27741021-2	chr2	27740921	27741121	+	977.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290481, intron 2 of 9)	intron (NM_001290481, intron 2 of 9)	30438.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-107313796-2	chr11	107313696	107313896	+	789.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 4 of 9)	intron (NR_153311, intron 4 of 9)	-124415.0	NM_001161329	68979.0	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98747275-7	chr11	98746954	98747154	+	808.0761719999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178060, intron 1 of 8)	intron (NM_178060, intron 1 of 8)	5269.0	NM_001313983	21833.0	Mm.265917	NM_178060	ENSMUSG00000058756	Thra	6430529J03Rik|AW259572|Erba|Nr1a1|Rvr|T3R[a]|T3Ralpha|Thra1|Thra2|c-erbA-1|c-erbA-alpha|c-erbAalpha	thyroid hormone receptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-120261814-2	chr14	120261714	120261914	+	661.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13855.0	NM_207515	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55252700-2	chr19	55252600	55252800	+	669.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027976)	promoter-TSS (NM_027976)	-669.0	NM_027976	433256.0	Mm.292056	NM_027976	ENSMUSG00000024981	Acsl5	1700030F05Rik|ACS2|ACS5|Facl5	acyl-CoA synthetase long-chain family member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-174018811-2	chr2	174018711	174018911	+	814.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58240.0	NM_172675	228960.0	Mm.277977	NM_172675	ENSMUSG00000027522	Stx16	4930401D03|5430410K23Rik|6330500A18Rik|AI648908|AW553605|Syn16	syntaxin 16	protein-coding	1.5915299031403	1.79025079636745	1.04071360828786	2.07201284012573	1.60470624611272	1.8040631202069	1.04484813309631	1.8012356276978	-0.258925304801533	0.827659677971002	0.998431161219273
Merged-chr15-78607037-2	chr15	78606937	78607137	+	911.3333130000001	f1_balb.idr|f1_c57bl6.idr	exon (NM_028195, exon 5 of 13)	exon (NM_028195, exon 5 of 13)	9990.0	NM_028195	72318.0	Mm.32911	NM_028195	ENSMUSG00000018008	Cyth4	2510004M07Rik|5830469K17Rik|AI467541|Pscd4|mFLJ00017	cytohesin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94020777-3	chr10	94020679	94020879	+	802.972229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304720, intron 1 of 11)	intron (NM_001304720, intron 1 of 11)	14963.0	NM_001304720	215008.0	Mm.124177	NM_172538	ENSMUSG00000036099	Vezt	A630071D13Rik|AI848282	vezatin, adherens junctions transmembrane protein	protein-coding	3.11013122692185	4.03920511726807	3.21935966561188	1.43175712189084	3.33442281990614	2.67684775794579	3.32800474483265	1.44048221897435	-0.576589799190119	0.679261852274502	0.99525161242239
Merged-chr2-93604959-1	chr2	93604859	93605059	+	543.0	f1_c57bl6.idr	Intergenic	Intergenic	-37475.0	NM_007442	11695.0	Mm.389389	NM_007442	ENSMUSG00000040310	Alx4	lst	aristaless-like homeobox 4	protein-coding	-0.864396307252582	-0.84957506141699	-0.854472504180853	-0.858164757719666	-0.863461036107386	-0.84836658588	-0.853425226377894	0.249185994851986	3.74302279536308	0.191681524434762	1
Merged-chr4-39611235-4	chr4	39611153	39611353	+	956.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER20B|LTR|ERVK	160960.0	NM_001081095	75471.0	Mm.23522	NM_001081095	ENSMUSG00000028287	1700009N14Rik	AI429145	RIKEN cDNA 1700009N14 gene	protein-coding	0.558599453082295	0.0441141279533318	0.46961514397369	0.437489330155541	0.0301377066350916	0.231175514578745	0.0402918810718862	0.036101365048899	-3.03163575994388	0.150534019920556	1
Merged-chr14-50831505-2	chr14	50831405	50831605	+	595.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_009351, intron 44 of 54)	intron (NM_009351, intron 44 of 54)	23589.0	NM_009632	11546.0	Mm.281482	NM_009632	ENSMUSG00000036023	Parp2	ADPRT-2|ARTD2|Adprt2|Adprtl2|Aspartl2|C78626|PARP-2|mPARP-2|pADPRT-2	poly (ADP-ribose) polymerase family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-84646389-2	chr3	84646289	84646489	+	655.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19803.0	NM_177260	320782.0	Mm.107370	NM_177260	ENSMUSG00000056498	Tmem154	9930117H01Rik	transmembrane protein 154	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-46812628-4	chr11	46812510	46812710	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178759, intron 1 of 8)	intron (NM_178759, intron 1 of 8)	1811.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128498800-4	chr10	128498678	128498878	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_131150)	promoter-TSS (NR_131150)	-93.0	NM_172259	216459.0	Mm.291688	NM_172259	ENSMUSG00000039824	Myl6b	5730437E04Rik|BC037527|MLC1SA	myosin, light polypeptide 6B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32744827-4	chr2	32744752	32744952	+	940.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001252547, exon 3 of 11)	exon (NM_001252547, exon 3 of 11)	-3836.0	NM_027529	70730.0	Mm.401360	NM_027529	ENSMUSG00000009551	6330409D20Rik	AA517851	RIKEN cDNA 6330409D20 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-13640477-3	chr8	13640383	13640583	+	903.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 1 of 23)	intron (NM_009025, intron 1 of 23)	37104.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	2.40437762221859	1.55751885070024	2.24997083964806	2.28491957520679	2.18646633976483	1.31414616965422	2.15465492328656	1.96801490703151	-0.548344007566255	0.575177722951699	0.965286201225318
Merged-chr7-88217862-2	chr7	88217762	88217962	+	618.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	-60223.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-5688225-3	chr4	5688099	5688299	+	749.305542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173426, intron 1 of 2)	intron (NM_173426, intron 1 of 2)	-36113.0	NM_001355716	242297.0	Mm.331470	NM_173426	ENSMUSG00000049119	Fam110b	1700012H17Rik|5031405P22|AW049855	family with sequence similarity 110, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-97009239-4	chr5	97009147	97009347	+	936.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080708, intron 1 of 15)	intron (NM_080708, intron 1 of 15)	11558.0	NM_080708	140780.0	Mm.281490	NM_080708	ENSMUSG00000034663	Bmp2k	4933417M22Rik|AA673486|AV128808|BIKE	BMP2 inducible kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-75747720-2	chr15	75747620	75747820	+	688.333313	f1_balb.idr|f1_c57bl6.idr	exon (NM_194350, exon 1 of 1)	exon (NM_194350, exon 1 of 1)	202.0	NM_194350	378435.0	Mm.309589	NM_194350	ENSMUSG00000047591	Mafa	RIPE3b1	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein A (avian)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-79140338-4	chr11	79140254	79140454	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013571, intron 1 of 17)	intron (NM_013571, intron 1 of 17)	6119.0	NM_013571	16706.0	Mm.4745	NM_013571	ENSMUSG00000018334	Ksr1	AW492498|B-KSR1|D11Bhm183e|D11Bhm184e|Ksr|RSU2|hb|mKSR1	kinase suppressor of ras 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-57980908-4	chr15	57980835	57981035	+	976.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4968.0	NM_173862	239463.0	Mm.221241	NM_173862	ENSMUSG00000051225	Fam83a	-	family with sequence similarity 83, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99482129-1	chr7	99482029	99482229	+	774.0	f1_balb.idr	TTS (NR_002172)	TTS (NR_002172)	803.0	NR_002172	449630.0	Mm.454449	NR_002172	ENSMUSG00000065822	Snord15a	EG449630|Gm5774|RNU15A|Rnu15-a|U15A	small nucleolar RNA, C/D box 15A	snoRNA	-0.423604160565846	-0.411422918657612	-0.415419748545906	-0.418499401494519	-0.277795761707912	0.208373795649237	-0.414538723287375	0.00908717097541822	3.56381100882806	0.149613164606658	1
Merged-chr4-40303658-3	chr4	40303554	40303754	+	602.666687	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9578.0	NR_040663	75819.0	Mm.399244	NR_040663	ENSMUSG00000087137	4930509K18Rik	-	RIKEN cDNA 4930509K18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-93890537-2	chr16	93890437	93890637	+	580.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028083, intron 5 of 13)	intron (NM_028083, intron 5 of 13)	6636.0	NM_028083	110749.0	Mm.274222	NM_028083	ENSMUSG00000022945	Chaf1b	2600017H24Rik|C76145|CAF-I p60|CAF-Ip60|CAF1|CAF1A|CAF1P60|MPHOSPH7	chromatin assembly factor 1, subunit B (p60)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-106499082-2	chr3	106498982	106499182	+	567.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001093754, intron 9 of 11)	intron (NM_001093754, intron 9 of 11)	13042.0	NM_028110	72121.0	Mm.14816	NM_028110	ENSMUSG00000027901	Dennd2d	2010308M01Rik|AI451421	DENN/MADD domain containing 2D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-49688768-4	chr4	49688688	49688888	+	678.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033351, intron 6 of 8)	intron (NM_001033351, intron 6 of 8)	-6805.0	NM_001004025	19059.0	Mm.46125	NM_001004025	ENSMUSG00000028310	Ppp3r2	CaNB2|CnB2	protein phosphatase 3, regulatory subunit B, alpha isoform (calcineurin B, type II)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-12929911-3	chr10	12929795	12929995	+	908.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6768.0	NR_038028	320273.0	Mm.417706	NR_038027	ENSMUSG00000097378	B230208H11Rik	-	RIKEN cDNA B230208H11 gene	ncRNA	2.59061832728744	2.99608120837789	2.24490010191095	1.39773168822871	2.3275562680817	3.0180329457396	2.63723461951106	2.19259257799412	0.297596341505813	0.73001265630462	0.998431161219273
Merged-chr14-66186266-4	chr14	66186163	66186363	+	919.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 5 of 30)	intron (NM_001162366, intron 5 of 30)	27561.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-24997367-4	chr19	24997293	24997493	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2136.0	NM_028785	76088.0	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	4.13965206490005	3.68621897573863	4.05563283183088	3.54457627813641	4.08536786931011	3.03185217455907	4.02551118012853	3.48032856199114	-0.215983954675639	0.669221203431026	0.993577811443337
Merged-chr10-59887560-4	chr10	59887411	59887611	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019965, intron 1 of 8)	ID4|SINE|ID	7920.0	NM_019965	56709.0	Mm.103610	NM_019965	ENSMUSG00000020109	Dnajb12	Dj10|mDj10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119363763-4	chr11	119363663	119363863	+	858.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178743, intron 6 of 16)	intron (NM_178743, intron 6 of 16)	8206.0	NM_178743	268512.0	Mm.31869	NM_178743	ENSMUSG00000039908	Slc26a11	F630021I08Rik	solute carrier family 26, member 11	protein-coding	0.331789101871051	1.02626665307253	0.546463916645204	0.343223503189325	1.13065615114707	1.03834242561903	0.351975936339295	0.344417790907208	0.913674245265373	0.621613689968982	1
Merged-chr12-79068454-2	chr12	79068354	79068554	+	621.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_181073, exon 16 of 29)	exon (NM_181073, exon 16 of 29)	21216.0	NM_029988	110417.0	Mm.268317	NM_029988	ENSMUSG00000021120	Pigh	2210416H01Rik|A930028P05Rik	phosphatidylinositol glycan anchor biosynthesis, class H	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101232279-3	chr11	101232186	101232386	+	891.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5823.0	NM_007970	14055.0	Mm.5027	NM_007970	ENSMUSG00000006920	Ezh1	ENX-2	enhancer of zeste 1 polycomb repressive complex 2 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-95980627-2	chr15	95980527	95980727	+	625.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	98926.0	NR_126493	402773.0	Mm.210567	NM_001033483	ENSMUSG00000078925	D030018L15Rik	-	nuclear receptor coactivator 2 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80246353-4	chr7	80246244	80246444	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177765)	promoter-TSS (NM_177765)	-32.0	NM_177765	269954.0	Mm.276780	NM_177765	ENSMUSG00000045467	Ttll13	1700111A04Rik|4921538O11|BC024578	tubulin tyrosine ligase-like family, member 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-66847756-4	chr14	66847667	66847867	+	874.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009955, intron 3 of 13)	intron (NM_009955, intron 3 of 13)	20833.0	NM_009955	12934.0	Mm.352648	NM_009955	ENSMUSG00000022048	Dpysl2	AI851130|Crmp2|DRP2|Musunc33|TOAD-64|Ulip2	dihydropyrimidinase-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-80163930-2	chr11	80163830	80164030	+	587.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172133, intron 5 of 10)	intron (NM_172133, intron 5 of 10)	9768.0	NM_172133	216991.0	Mm.341520	NM_172133	ENSMUSG00000020709	Adap2	Centa2	ArfGAP with dual PH domains 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-13006238-2	chr7	13006138	13006338	+	775.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001024699, exon 3 of 3)	exon (NM_001024699, exon 3 of 3)	3614.0	NM_001024699	232879.0	Mm.279272	NM_001024699	ENSMUSG00000049600	Zbtb45	BB161562|Gm157|Zfp499	zinc finger and BTB domain containing 45	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-153490096-2	chr1	153489996	153490196	+	768.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-2436.0	NM_007842	13211.0	Mm.20000	NM_007842	ENSMUSG00000042699	Dhx9	AI326842|Ddx9|HEL-5|NDHII|RHA|mHEL-5	DEAH (Asp-Glu-Ala-His) box polypeptide 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16244291-4	chr7	16244204	16244404	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_176912)	promoter-TSS (NM_176912)	-150.0	NM_176912	319430.0	Mm.239570	NM_176912	ENSMUSG00000074361	C5ar2	C5L2|E030029A11Rik|Gpr77	complement component 5a receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-53577930-2	chr7	53577830	53578030	+	764.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	313959.0	NR_105746	102466619.0		NR_105746	ENSMUSG00000099176	Mir6238	Gm27982|mmu-mir-6238	microRNA 6238	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3913471-2	chr19	3913371	3913571	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144870)	promoter-TSS (NM_144870)	-697.0	NM_001271444	225887.0	Mm.44227	NM_144870	ENSMUSG00000059734	Ndufs8	BC021616|CI-23kD|TYKY	NADH dehydrogenase (ubiquinone) Fe-S protein 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120704412-3	chr8	120704327	120704527	+	846.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31931.0	NM_008320	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46311370-4	chr8	46311223	46311423	+	880.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-16652.0	NM_173789	234219.0	Mm.145631	NM_173789	ENSMUSG00000047171	Helt	A830086M02|Hesl|Heslike|Mgn|megane	helt bHLH transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45010165-4	chr7	45010074	45010274	+	844.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001008422, intron 6 of 10)	intron (NM_001008422, intron 6 of 10)	2313.0	NR_106021	102466218.0		NR_106021	ENSMUSG00000098839	Mir7054	Gm27557|mmu-mir-7054	microRNA 7054	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-121368180-2	chr10	121368080	121368280	+	696.8000490000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_029364, intron 1 of 13)	intron (NM_029364, intron 1 of 13)	3090.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	-0.700064241511417	-0.186671140929496	-0.692852367725508	-0.695563882069579	-0.699394869705802	-0.177296101845517	-0.692077155152847	-0.695090216270211	0.0394491945098347	0.989215944639676	1
Merged-chr5-16411766-1	chr5	16411666	16411866	+	616.0	f0_balb.idr	Intergenic	Intergenic	-141729.0	NM_001289460	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-63118274-2	chr14	63118174	63118374	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4188.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-41947963-1	chr18	41947863	41948063	+	568.0	f1_balb.idr	intron (NM_029942, intron 1 of 6)	intron (NM_029942, intron 1 of 6)	3231.0	NM_029942	77619.0	Mm.30649	NM_029942	ENSMUSG00000056671	Prelid2	1700003A01Rik|C330008K14Rik	PRELI domain containing 2	protein-coding	1.20263436784921	0.643764031146307	0.634318273015659	1.07197051423685	1.21491114594183	0.645884675148914	1.23768936065314	1.07838086281137	0.70334427284568	0.651816238098696	1
Merged-chr3-55549593-3	chr3	55549505	55549705	+	972.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	87877.0	NM_001357476	13175.0	Mm.393242	NM_019978	ENSMUSG00000027797	Dclk1	1700113D08Rik|2810480F11Rik|AI836758|Click-I|Cpg16|Dcamkl1|Dcl|Dclk|mKIAA0369	doublecortin-like kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35379517-4	chr17	35379438	35379638	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001143689)	promoter-TSS (NM_001143689)	-79.0	NM_001143689	15015.0	Mm.464284	NM_001143689	ENSMUSG00000035929	H2-Q4	H-2Q4|H2-Gs10|Qa-4|Qa4|Qat-4|Qb-1|Qb1	histocompatibility 2, Q region locus 4	protein-coding	4.79305937978193	4.62312844320755	4.52909682182757	4.30024343025752	4.76201996434394	4.81035287970368	5.30307566875007	5.10454084598178	0.53287239699193	0.120549392227406	0.544833604198046
Merged-chr7-122137269-2	chr7	122137169	122137369	+	725.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021608, intron 3 of 5)	intron (NM_021608, intron 3 of 5)	4228.0	NM_021608	59288.0	Mm.478285	NM_021608	ENSMUSG00000030868	Dctn5	4930427E12Rik|C78178|b2b315Clo	dynactin 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-96929871-2	chr11	96929771	96929971	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146026, intron 1 of 2)	intron (NM_146026, intron 1 of 2)	547.0	NM_146026	217138.0	Mm.342551	NM_146026	ENSMUSG00000047040	Prr15l	Atad4|BC022765|E230006A12Rik	proline rich 15-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-40727773-3	chr9	40727666	40727866	+	989.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133733, intron 1 of 6)	MTC|LTR|ERVL-MaLR	41802.0	NM_133733	71566.0	Mm.280560	NM_133733	ENSMUSG00000032024	Clmp	9030425E11Rik|ACAM|ASP5|AW557819	CXADR-like membrane protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-11685575-4	chr11	11685483	11685683	+	974.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001301868)	promoter-TSS (NM_001301868)	-342.0	NM_009578	22778.0	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-60666027-4	chr19	60665946	60666146	+	954.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER58A|DNA|hAT-Charlie	-85023.0	NM_001172096	78832.0	Mm.259026	NM_030197	ENSMUSG00000033417	Cacul1	2700078E11Rik|2810417M16Rik|9830127L17Rik|AI450346|D130033C15Rik	CDK2 associated, cullin domain 1	protein-coding	3.1898780589825	3.74669905152894	3.62374362033375	2.39565297187588	3.21716870992971	3.19862835942461	4.03709556963349	4.21064599298404	0.631952103723564	0.285981446485272	0.79047889608285
Merged-chr6-90653951-2	chr6	90653851	90654051	+	757.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34705.0	NM_001037493	71699.0	Mm.272633	NM_027868	ENSMUSG00000030089	Slc41a3	1010001P06Rik|AI480742|SLC41A1-L2	solute carrier family 41, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-27031326-1	chr14	27031226	27031426	+	633.0	f1_balb.idr	Intergenic	B3|SINE|B2	-7675.0	NM_134437	171463.0	Mm.206726	NM_027265	ENSMUSG00000040717	Il17rd	2810004A10Rik|AI428510|Sef|Sef-S	interleukin 17 receptor D	protein-coding	1.6943796304534	1.76485355279694	1.52150601390521	1.64778556355715	2.37063920949209	1.08290490787301	1.05470550078978	2.92309400591126	1.19199003144199	0.294565578030606	0.798191705447
Merged-chr10-82666633-4	chr10	82666549	82666749	+	970.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029102, intron 3 of 9)	L2c|LINE|L2	24001.0	NM_029102	74782.0	Mm.191281	NM_029102	ENSMUSG00000020251	Glt8d2	1110021D20Rik	glycosyltransferase 8 domain containing 2	protein-coding	3.13423003461725	3.51496399319717	3.98465079461332	3.59517286343867	3.23829066735001	3.62332053871948	2.77341398139678	2.368546688319	-0.807807838289356	0.181662709006806	0.655055855338705
Merged-chr11-116782812-4	chr11	116782722	116782922	+	932.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CGGGG)n|Simple_repeat|Simple_repeat	-7315.0	NM_011371	20445.0	Mm.436887	NM_011371	ENSMUSG00000009588	St6galnac1	Siat7a	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 1	protein-coding	1.1768923512261	1.33806589569947	2.03069364983825	1.76794289255876	3.2878889480716	2.85174932628488	3.61309494440725	3.01244142127359	3.56548460772827	9.57416473861219e-05	0.00300708975219552
Merged-chr4-32343421-4	chr4	32343317	32343517	+	986.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74018.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30435847-6	chr2	30435724	30435924	+	815.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138748, intron 5 of 9)	(TG)n|Simple_repeat|Simple_repeat	19774.0	NM_138748	110854.0	Mm.275393	NM_138748	ENSMUSG00000039515	Ptpa	2610042B21Rik|C77440|N28142|PR53|Ppp2r4	protein phosphatase 2 protein activator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70981264-3	chr14	70981159	70981359	+	910.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	91152.0	NM_001302094	14586.0	Mm.32619	NM_008115	ENSMUSG00000022103	Gfra2	-	glial cell line derived neurotrophic factor family receptor alpha 2	protein-coding	3.0539215358987	3.87752176128354	3.22143368330271	3.57361893062848	3.26084215312545	4.73155061589061	3.24792174603698	3.8623493355639	0.664139714071427	0.242447325837975	0.739482304271025
Merged-chr1-77831981-3	chr1	77831871	77832071	+	740.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-316883.0	NM_007936	13838.0	Mm.400747	NM_007936	ENSMUSG00000026235	Epha4	2900005C20Rik|AI385584|Cek8|Hek8|Sek|Sek1|Tyro1|rb	Eph receptor A4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76511978-4	chr15	76511881	76512081	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010046)	promoter-TSS (NM_010046)	13.0	NM_010046	13350.0	Mm.22633	NM_010046	ENSMUSG00000022555	Dgat1	ARAT|C75990|D15Ertd23e|Dgat	diacylglycerol O-acyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-13661643-3	chr8	13661562	13661762	+	704.266663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 1 of 23)	Lx7|LINE|L1	15925.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-87663615-1	chr16	87663515	87663715	+	635.0	f1_balb.idr	Intergenic	Intergenic	-35339.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	0.139668829156265	-0.470897330298664	-0.474559271878161	-0.477377027456468	-0.339614740650072	-0.118408613646351	-0.473752549020738	-0.476885247750005	-0.595157968408829	0.818987230767485	1
Merged-chr11-51689841-2	chr11	51689741	51689941	+	761.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1207.0	NM_025319	66050.0	Mm.35693	NM_025319	ENSMUSG00000007777	0610009B22Rik	-	RIKEN cDNA 0610009B22 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-103971038-2	chr11	103970938	103971138	+	755.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007477, intron 2 of 4)	intron (NM_007477, intron 2 of 4)	4167.0	NM_007477	11841.0	Mm.5061	NM_007477	ENSMUSG00000062421	Arf2	-	ADP-ribosylation factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-60403050-2	chr10	60402950	60403150	+	926.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001164374, exon 2 of 2)	exon (NM_001164374, exon 2 of 2)	3324.0	NM_001164374	100302688.0	Mm.444135	NM_001164374	ENSMUSG00000090439	Gm17455	-	predicted gene, 17455	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-43396983-4	chr7	43396900	43397100	+	953.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11280.0	NM_172900	243958.0	Mm.24444	NM_172900	ENSMUSG00000030468	Siglecg	9830164H23|A630096C01Rik|Siglec-G|Siglec10|mSiglec-G	sialic acid binding Ig-like lectin G	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-61594505-2	chr3	61594405	61594605	+	999.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	229998.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126881285-4	chr8	126881234	126881434	+	882.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	32314.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-134607910-3	chr4	134607810	134608010	+	619.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207237, intron 2 of 11)	intron (NM_207237, intron 2 of 11)	-40059.0	NR_105829	102465216.0		NR_105829	ENSMUSG00000099289	Mir6403	Gm27992|mmu-mir-6403	microRNA 6403	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-103308084-4	chr11	103307990	103308190	+	959.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	36612.0	NM_133715	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	4.05392312565617	4.22068880643187	4.26932697123204	4.8168931076755	3.41641359027649	3.76071661383349	4.78397117873022	5.14475389452365	0.113438468307612	0.812739060595007	0.998431161219273
Merged-chr19-3944259-2	chr19	3944159	3944359	+	747.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_019449, exon 9 of 11)	exon (NM_019449, exon 9 of 11)	9073.0	NM_001161428	54445.0	Mm.262094	NM_019449	ENSMUSG00000036908	Unc93b1	Unc-93B1|Unc93b	unc-93 homolog B1 (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-138848488-2	chr7	138848388	138848588	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026391, intron 2 of 8)	intron (NM_026391, intron 2 of 8)	2102.0	NM_026391	52432.0	Mm.258739	NM_026391	ENSMUSG00000041769	Ppp2r2d	1300017E19Rik|D7Ertd753e|MDS026	protein phosphatase 2, regulatory subunit B, delta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-89876817-4	chr1	89876722	89876922	+	876.395874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037136, intron 15 of 16)	intron (NM_001037136, intron 15 of 16)	54354.0	NM_010262	14472.0	Mm.204730	NM_010262	ENSMUSG00000034486	Gbx2	D130058E05Rik|Gbx-2|MMoxA|Stra7	gastrulation brain homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-95653726-3	chr1	95653596	95653796	+	830.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009183, exon 3 of 5)	exon (NM_009183, exon 3 of 5)	13898.0	NM_009183	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-35597255-4	chr6	35597136	35597336	+	880.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57348.0	NM_008098	14489.0	Mm.182746	NM_008098	ENSMUSG00000029840	Mtpn	5033418D15Rik|Gcdp|V1	myotrophin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-23431208-2	chr5	23431108	23431308	+	671.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_040469)	TTS (NR_040469)	3145.0	NR_040469	269630.0	Mm.425231	NR_040469	ENSMUSG00000073147	5031425E22Rik	-	RIKEN cDNA 5031425E22 gene	ncRNA	2.07785567326885	2.18637974757175	2.53879486085442	2.18177554015326	1.86108468868832	2.20154001886976	2.46867522312161	1.93950897028886	-0.308642453883737	0.720482736806019	0.998431161219273
Merged-chr12-119484144-4	chr12	119484030	119484230	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40720.0	NM_001163136	238455.0	Mm.31376	NM_001163136	ENSMUSG00000041886	Macc1	4732474O15Rik|Gm267	metastasis associated in colon cancer 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-145354069-3	chr4	145353962	145354162	+	889.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38915.0	NM_009401	21941.0	Mm.12810	NM_009401	ENSMUSG00000028602	Tnfrsf8	Cd30|D1S166E|Ki|Ki-1	tumor necrosis factor receptor superfamily, member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53049630-2	chr4	53049530	53049730	+	611.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 36 of 49)	intron (NM_013454, intron 36 of 49)	37750.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-100459091-1	chr9	100458991	100459191	+	820.0	f1_c57bl6.idr	3' UTR (NM_001033543, exon 7 of 7)	3' UTR (NM_001033543, exon 7 of 7)	27382.0	NM_001033543	213208.0	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	0.671163053880022	0.39745624285859	1.47538084094733	0.380967658009599	0.678903115399786	0.799298988076289	0.390241838858909	0.727722737804328	-0.876865138101241	0.603375994866297	1
Merged-chr5-135169323-2	chr5	135169223	135169423	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009745, intron 1 of 5)	PB1D7|SINE|Alu	951.0	NM_009745	12054.0	Mm.405834	NM_009745	ENSMUSG00000029681	Bcl7b	-	B cell CLL/lymphoma 7B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-156442288-4	chr1	156442169	156442369	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009230, intron 6 of 15)	intron (NM_009230, intron 6 of 15)	-21354.0	NM_001346967	77352.0	Mm.428709	NM_001033180	ENSMUSG00000026601	Axdnd1	9430070O13Rik|Gm979	axonemal dynein light chain domain containing 1	protein-coding	0.852090859940099	1.53350101842564	1.73948356997377	2.13037615367831	0.856000286067667	1.82483959771008	0.897192118082377	1.57419170340072	-0.900618981122483	0.505316195635002	0.940939014262092
Merged-chr18-75895944-4	chr18	75895854	75896054	+	856.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145356, intron 1 of 4)	intron (NM_145356, intron 1 of 4)	75776.0	NM_145356	207259.0	Mm.159332	NM_145356	ENSMUSG00000044646	Zbtb7c	B230208J24Rik|Kr-pok|Zbtb36	zinc finger and BTB domain containing 7C	protein-coding	2.09959607662087	2.67790978298603	1.62559164298537	2.6809793988583	2.1164830664714	1.89574417536533	2.40650024651662	2.33347344427551	-0.338934528503688	0.699006305300822	0.998334773152837
Merged-chr13-95777372-3	chr13	95777222	95777422	+	856.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027711, intron 2 of 35)	intron (NM_027711, intron 2 of 35)	80402.0	NM_010170	14064.0	Mm.440952	NM_010170	ENSMUSG00000021675	F2rl2	F730031A08|PAR3	coagulation factor II (thrombin) receptor-like 2	protein-coding	-0.179957296890799	-0.125097678394292	-0.293332785130498	-0.295666572774373	-0.176534821000703	0.0205501163027323	-0.292661491227037	0.071583488630361	1.6813061006225	0.45407206602167	1
Merged-chr2-158163248-4	chr2	158163157	158163357	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR67B|LTR|ERVL	-16865.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44735352-2	chr9	44735252	44735452	+	911.099976	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153537)	promoter-TSS (NM_153537)	-154.0	NM_153537	102693.0	Mm.28639	NM_153537	ENSMUSG00000048537	Phldb1	AU041016|D330037A14Rik|Ll5a	pleckstrin homology like domain, family B, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81871527-1	chr15	81871427	81871627	+	607.0	f1_c57bl6.idr	promoter-TSS (NM_080633)	promoter-TSS (NM_080633)	365.0	NM_026737	68479.0	Mm.271715	NM_026737	ENSMUSG00000061360	Phf5a	1110007B08Rik	PHD finger protein 5A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-22549428-4	chr5	22549340	22549540	+	908.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_102315)	promoter-TSS (NR_102315)	891.0	NM_011959	26429.0	Mm.412217	NM_011959	ENSMUSG00000029012	Orc5	AL033327|MmORC5|Orc5l	origin recognition complex, subunit 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-27444149-2	chr16	27444049	27444249	+	686.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025615, intron 8 of 9)	intron (NM_001025615, intron 8 of 9)	55193.0	NM_001289436	67501.0	Mm.258985	NM_026202	ENSMUSG00000038127	Ccdc50	C3orf6	coiled-coil domain containing 50	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-93674950-4	chr14	93674854	93675054	+	939.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081377, intron 2 of 4)	intron (NM_001081377, intron 2 of 4)	215715.0	NM_001271800	211712.0	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding	-0.0120151773940042	0.245094162996877	-0.165791458384258	0.949838716034979	-0.17831544973391	-0.157682250753677	-0.164324314506652	-0.170046318849856	-4.09172137687456	0.0629754107992326	1
Merged-chr13-37855207-3	chr13	37855110	37855310	+	898.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039188, intron 1 of 9)	intron (NM_001039188, intron 1 of 9)	27817.0	NM_001039188	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-50189067-3	chr17	50188967	50189167	+	824.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181397, intron 1 of 9)	intron (NM_181397, intron 1 of 9)	1430.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-100174560-2	chr13	100174460	100174660	+	834.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001126182, intron 8 of 15)	intron (NM_001126182, intron 8 of 15)	27562.0	NM_001126182	17948.0	Mm.89961	NM_010872	ENSMUSG00000078945	Naip2	Birc1b|Naip-rs6	NLR family, apoptosis inhibitory protein 2	protein-coding	0.620585662809499	1.2938476129184	0.654887779686732	1.81649816540156	0.623861617770925	1.30599682590759	0.658453038967416	1.82849542618088	0.0315476544939973	0.984150511901947	0.998431161219273
Merged-chr1-171852930-1	chr1	171852830	171853030	+	839.0	f1_balb.idr	3' UTR (NM_001252472, exon 3 of 3)	3' UTR (NM_001252472, exon 3 of 3)	13233.0	NM_013489	12523.0	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	-0.862030634104754	-0.846340151604894	-0.851500953857566	-0.855415204408448	-0.861037010143218	-0.845072134051678	0.297607450125457	-0.854727637484263	3.74638014297664	0.190525819776624	1
Merged-chr11-16967966-4	chr11	16967823	16968023	+	998.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16513.0	NM_176982	319701.0	Mm.120672	NM_176982	ENSMUSG00000044966	Fbxo48	A630050E13Rik	F-box protein 48	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124802908-2	chr6	124802808	124803008	+	812.625	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	-5753.0	NM_001306051	14794.0	Mm.261906	NM_013539	ENSMUSG00000038451	Spsb2	AI461677|C9|Grcc9|SSB2	splA/ryanodine receptor domain and SOCS box containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16327890-2	chr7	16327790	16327990	+	890.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001285891, exon 9 of 10)	exon (NM_001285891, exon 9 of 10)	18307.0	NM_133234	170770.0	Mm.7660	NM_133234	ENSMUSG00000002083	Bbc3	PUMA|PUMA/JFY1	BCL2 binding component 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70767883-5	chr8	70767765	70767965	+	991.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008841)	TTS (NM_008841)	-1202.0	NM_023065	65972.0	Mm.30241	NM_023065		Ifi30	GILT|IP30	interferon gamma inducible protein 30	protein-coding	4.8664059734723	4.83683983882274	3.95067104739562	5.45164234451522	5.43372193438377	3.9504461144036	5.61586776503201	4.58376885008576	0.211094337972338	0.6251041535516	0.980912176761026
Merged-chr6-124724949-2	chr6	124724849	124725049	+	748.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077705, intron 11 of 15)	intron (NM_001077705, intron 11 of 15)	-6559.0	NR_029792	723944.0		NR_029792	ENSMUSG00000065462	Mir200c	Mirn200c|mir-200c	microRNA 200c	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-16089547-2	chr4	16089447	16089647	+	800.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	74096.0	NM_138952	192656.0	Mm.112765	NM_138952	ENSMUSG00000041135	Ripk2	2210420D18Rik|CARD3|CARDIAK|CCK|D4Bwg0615e|RICK|RIP2	receptor (TNFRSF)-interacting serine-threonine kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122407837-4	chr8	122407761	122407961	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029993, intron 10 of 18)	intron (NM_001029993, intron 10 of 18)	-14159.0	NM_145834	234836.0	Mm.222808	NM_145834	ENSMUSG00000046108	Il17c	IL-17C	interleukin 17C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35741439-2	chr17	35741339	35741539	+	787.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-31011.0	NR_045459	74601.0	Mm.410840	NR_045459	ENSMUSG00000092171	4833427F10Rik	-	RIKEN cDNA 4833427F10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-109273888-2	chr4	109273788	109273988	+	657.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6387.0	NM_007943	13858.0	Mm.318250	NM_007943	ENSMUSG00000028552	Eps15	2410112D09Rik	epidermal growth factor receptor pathway substrate 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43631246-2	chr4	43631146	43631346	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355466)	promoter-TSS (NM_001355466)	-689.0	NM_001355466	230103.0	Mm.103477	NM_173788	ENSMUSG00000028469	Npr2	GC-B|GC-B2|GC-B3|cn|mNPR-B|pwe	natriuretic peptide receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-94069637-3	chr11	94069533	94069733	+	797.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025428, intron 4 of 26)	intron (NM_001025428, intron 4 of 26)	25428.0	NM_001025429	70834.0	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-43236632-2	chr5	43236532	43236732	+	593.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177379, intron 1 of 10)	intron (NM_001177379, intron 1 of 10)	-1278.0	NR_028417	665934.0	Mm.381491	NR_028417	ENSMUSG00000085720	Gm7854	EG665934	predicted gene 7854	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-111034482-2	chr8	111034382	111034582	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146217, intron 1 of 20)	B1F|SINE|Alu	640.0	NM_146217	234734.0	Mm.24174	NM_146217	ENSMUSG00000031960	Aars	AI316495|C76919|sti	alanyl-tRNA synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-24438411-3	chr8	24438303	24438503	+	991.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_026931, exon 1 of 1)	3' UTR (NM_026931, exon 1 of 1)	543.0	NM_026931	69068.0	Mm.25775	NM_026931	ENSMUSG00000056313	Tcim	1110065B09Rik|1810011O10Rik|AW121743|AW321058	transcriptional and immune response regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-12263580-4	chr12	12263484	12263684	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146119, intron 1 of 11)	intron (NM_001146119, intron 1 of 11)	1445.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101173967-4	chr15	101173910	101174110	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007395)	promoter-TSS (NM_007395)	-62.0	NM_007395	11479.0	Mm.308467	NM_007395	ENSMUSG00000000532	Acvr1b	6820432J04|ALK-4|ActR-IB|ActRIB|Acvrlk4|Alk4|SKR2	activin A receptor, type 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30992341-3	chr7	30992233	30992433	+	806.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	10412.0	NM_001242647	76415.0	Mm.259739	NM_175240	ENSMUSG00000046826	Fam187b	1700020B09Rik|Tmem162	family with sequence similarity 187, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81046338-4	chr15	81046261	81046461	+	866.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001082536, intron 2 of 13)	intron (NM_001082536, intron 2 of 13)	58686.0	NM_153049	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-105712054-3	chr3	105711958	105712158	+	649.399963	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163356, intron 1 of 1)	intron (NM_001163356, intron 1 of 1)	6600.0	NM_001163356	109050.0	Mm.212591	NM_175398	ENSMUSG00000048458	Fam212b	6530418L21Rik|inka2	family with sequence similarity 212, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-48694741-4	chr2	48694639	48694839	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-119370.0	NM_007396	11480.0	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-151967163-4	chr2	151967109	151967309	+	862.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_035478)	TTS (NR_035478)	408.0	NR_035478	100316704.0		NR_035478	ENSMUSG00000088491	Mir1953	mir-1953|mmu-mir-1953	microRNA 1953	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-32199611-4	chr12	32199523	32199723	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020272, intron 4 of 10)	intron (NM_020272, intron 4 of 10)	8715.0	NM_001146201	30955.0	Mm.101369	NM_020272	ENSMUSG00000020573	Pik3cg	5830428L06Rik|PI3Kgamma|p110gamma	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-95105548-2	chr4	95105448	95105648	+	871.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53326.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-42987582-4	chr4	42987491	42987691	+	952.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009503, intron 7 of 16)	RLTR12B|LTR|ERVK	12916.0	NM_009503	269523.0	Mm.245976	NM_009503	ENSMUSG00000028452	Vcp	3110001E05|CDC48|p97|p97/VCP	valosin containing protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-79190980-4	chr12	79190906	79191106	+	998.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001362269)	promoter-TSS (NM_001362269)	-45.0	NM_001362269	17252.0	Mm.291799	NM_021557	ENSMUSG00000066441	Rdh11	2610319N22Rik|AI428145|AU045252|Arsdr1|C85936|CGI-82|HCBP12|M42C60|Mdt1|Psdr1|SCALD|UBE-1c1|Ube-1c|ralR1	retinol dehydrogenase 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-18816198-4	chr2	18816082	18816282	+	932.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14364.0	NR_131254	66774.0	Mm.87075	NR_131254	ENSMUSG00000097638	Carlr	4933439G12Rik|Carl	cardiac and apoptosis-related long non-coding RNA	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-118867386-3	chr10	118867267	118867467	+	912.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001014390, intron 2 of 2)	intron (NM_001014390, intron 2 of 2)	1536.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	2.71255821522789	1.38502171572119	2.40672231426248	2.22045008116591	3.02649902515708	2.08108738940402	1.61848560232988	2.55335729918837	0.354799701138351	0.705278604772106	0.998431161219273
Merged-chr5-77194129-3	chr5	77194026	77194226	+	795.277771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	17079.0	NM_001289767	69982.0	Mm.46106	NM_183284	ENSMUSG00000053030	Spink2	1700007F22Rik|AV038945|HUSI-II	serine peptidase inhibitor, Kazal type 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-88376939-4	chr10	88376847	88377047	+	997.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR41B|LTR|ERVL	-2465.0	NM_001004164	432486.0	Mm.335190	NM_001004164	ENSMUSG00000035311	Gnptab	EG432486|mKIAA1208	N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-18220165-2	chr16	18220065	18220265	+	718.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_172151)	TTS (NM_172151)	-6302.0	NR_015575	66779.0	Mm.387525	NR_015575		4933432I09Rik	-	RIKEN cDNA 4933432I09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80290095-2	chr10	80289995	80290195	+	585.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 1 of 4)	AT_rich|Low_complexity|Low_complexity	-2336.0	NM_009091	20054.0	Mm.643	NM_009091	ENSMUSG00000063457	Rps15	rig	ribosomal protein S15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97309534-4	chr11	97309422	97309622	+	971.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6194.0	NM_025927	67036.0	Mm.5381	NM_025927	ENSMUSG00000018882	Mrpl45	2600005P05Rik|AU043542|R75241	mitochondrial ribosomal protein L45	protein-coding	0.597586471055119	0.660159743334121	0.896534269938848	0.624777004071148	1.29593218906082	1.88157650888185	2.28214036476693	0.872168184949969	4.48169044926638	0.00317567872725633	0.0471556848633929
Merged-chr7-19821495-2	chr7	19821395	19821595	+	952.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_033601, intron 1 of 8)	intron (NM_033601, intron 1 of 8)	1260.0	NM_033601	12051.0	Mm.439658	NM_033601	ENSMUSG00000053175	Bcl3	AI528691|Bcl-3	B cell leukemia/lymphoma 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-26765085-4	chr14	26764981	26765181	+	923.2333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR50A|LTR|ERVK	-95235.0	NM_178668	211948.0	Mm.290758	NM_178668	ENSMUSG00000043702	Pde12	2'-PDE|E430028B21Rik	phosphodiesterase 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52567024-2	chr13	52566924	52567124	+	725.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6201.0	NR_046069	100040572.0	Mm.278873	NR_046069		Gm2848	-	predicted gene 2848	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-8842984-3	chr10	8842888	8843088	+	937.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 2 of 19)	intron (NM_175155, intron 2 of 19)	43082.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-130061361-2	chr3	130061261	130061461	+	767.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207209)	promoter-TSS (NM_207209)	-454.0	NM_207209	99683.0	Mm.192303	NM_207209	ENSMUSG00000001052	Sec24b	AI605202|SEC24	Sec24 related gene family, member B (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167764153-2	chr2	167764053	167764253	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	72976.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150015592-2	chr4	150015487	150015687	+	694.916626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6564.0	NM_173371	100198.0	Mm.22183	NM_173371	ENSMUSG00000028980	H6pd	AI785303|G6pd1|Gpd-1|Gpd1	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	protein-coding	3.7120942705487	3.44216885336016	2.89996628670598	3.94752370135532	2.90551259494267	3.55639321943396	2.46462476688524	3.62863506695069	-0.532018192407367	0.379045078508637	0.871744368943447
Merged-chr6-71823746-4	chr6	71823653	71823853	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025430)	promoter-TSS (NM_025430)	31.0	NM_025430	66223.0	Mm.28579	NM_025430	ENSMUSG00000052962	Mrpl35	1110066C01Rik	mitochondrial ribosomal protein L35	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-104131253-4	chr12	104131163	104131363	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173024, intron 2 of 4)	intron (NM_173024, intron 2 of 4)	3267.0	NM_173024	271047.0	Mm.120265	NM_173024	ENSMUSG00000066364	Serpina3b	6A1|A030003A19Rik	serine (or cysteine) peptidase inhibitor, clade A, member 3B	protein-coding	2.0269490718139	1.86662791411889	1.14524398775623	1.12122223970075	2.32671710365014	3.00057935103679	1.41446239231005	2.45409527598635	2.01620751534136	0.0604882172631542	0.363651214506749
Merged-chr4-154864407-4	chr4	154864302	154864502	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_154548, exon 5 of 5)	non-coding (NR_154548, exon 5 of 5)	-5183.0	NM_013783	27390.0	Mm.116944	NM_013783	ENSMUSG00000058183	Mmel1	Mell1|NEP2|NEPII|Nl1|SEP	membrane metallo-endopeptidase-like 1	protein-coding	4.49264457624838	3.69307376698777	3.56193610958463	4.84594068547462	4.87121532599398	3.38674744285241	4.96631200616797	3.37418028067977	0.136407797328306	0.797747961088603	0.998431161219273
Merged-chr15-4821317-4	chr15	4821186	4821386	+	814.341675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4A|LINE|L1	-77451.0	NM_001166066	223825.0	Mm.159281	NM_001166066	ENSMUSG00000022155	Mroh2b	4930455B06Rik|Heatr7b2|SPIF	maestro heat-like repeat family member 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-16747821-2	chr15	16747721	16747921	+	797.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	-30280.0	NM_009869	12565.0	Mm.439758	NM_009869	ENSMUSG00000025370	Cdh9	-	cadherin 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-19592796-2	chr10	19592696	19592896	+	553.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010511, intron 1 of 6)	intron (NM_010511, intron 1 of 6)	847.0	NM_010511	15979.0	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-29972964-4	chr5	29972870	29973070	+	944.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40144.0	NM_001314054	16193.0	Mm.1019	NM_031168	ENSMUSG00000025746	Il6	Il-6	interleukin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-25256905-4	chr2	25256758	25256958	+	913.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_177344)	TTS (NM_177344)	1419.0	NM_177344	227615.0	Mm.213925	NM_177344	ENSMUSG00000078201	Tmem203	C730025P13Rik|Hbebp1	transmembrane protein 203	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-20631909-4	chr11	20631777	20631977	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001038625)	promoter-TSS (NM_001038625)	-100.0	NM_001038625	58172.0	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-36158421-3	chr4	36158330	36158530	+	733.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166000, intron 4 of 8)	intron (NM_001166000, intron 4 of 8)	-313226.0	NM_175516	242384.0	Mm.132507	NM_175516	ENSMUSG00000045083	Lingo2	B230217C06Rik|Lern3|Lrrn6c	leucine rich repeat and Ig domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128298961-4	chr10	128298860	128299060	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031252)	promoter-TSS (NM_031252)	-876.0	NM_031252	83430.0	Mm.125482	NM_031252	ENSMUSG00000025383	Il23a	IL-23|p19	interleukin 23, alpha subunit p19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-102881875-2	chr11	102881775	102881975	+	632.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011431)	promoter-TSS (NM_011431)	631.0	NM_028492	73293.0	Mm.67659	NM_028492	ENSMUSG00000020930	Ccdc103	1700039D13Rik	coiled-coil domain containing 103	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-119472398-3	chr6	119472294	119472494	+	611.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009525, intron 1 of 4)	ERVL-int|LTR|ERVL	-5183.0	NM_001271758	22419.0	Mm.321818	NM_009525	ENSMUSG00000030170	Wnt5b	AW545702|Wnt-5b	wingless-type MMTV integration site family, member 5B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55774589-3	chr19	55774498	55774698	+	818.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001331146, intron 4 of 14)	intron (NM_001331146, intron 4 of 14)	32788.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	-0.0327518078649727	0.35114044536787	-0.0207846771505358	0.623676360636858	-0.0316375607739572	0.627752504000508	-0.0195030419694726	-0.0244894106366421	-0.581016346330606	0.796455806338735	1
Merged-chr11-54860713-4	chr11	54860597	54860797	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029327)	promoter-TSS (NM_029327)	-106.0	NM_029327	75530.0	Mm.83578	NM_029327	ENSMUSG00000020268	Lyrm7	1700024C24Rik|9330147L21Rik	LYR motif containing 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-184727558-2	chr1	184727458	184727658	+	651.833374	f1_balb.idr|f1_c57bl6.idr	exon (NM_008250, exon 4 of 4)	exon (NM_008250, exon 4 of 4)	4935.0	NM_008250	15284.0	Mm.1347	NM_008250	ENSMUSG00000039377	Hlx	Hlx1	H2.0-like homeobox	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-90495696-1	chr3	90495596	90495796	+	742.0	f1_c57bl6.idr	Intergenic	Intergenic	-4683.0	NM_133854	20615.0	Mm.331182	NM_133854	ENSMUSG00000001018	Snapin	25kDa|AA407989|AV026596|Bloc1s7|Snap25bp|Snapap	SNAP-associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120802408-2	chr8	120802308	120802508	+	649.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	63769.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-113269218-2	chr13	113269118	113269318	+	915.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	59559.0	NM_023612	71690.0	Mm.38929	NM_023612	ENSMUSG00000042379	Esm1	0610042H23Rik|AV004503|ESM-1	endothelial cell-specific molecule 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-60960719-4	chr1	60960631	60960831	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17183.0	NM_017480	54167.0	Mm.42044	NM_017480	ENSMUSG00000026009	Icos	AILIM|CCLP|CRP-1|H4|Ly115	inducible T cell co-stimulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-89453516-4	chr15	89453426	89453626	+	837.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021921)	promoter-TSS (NM_021921)	-385.0	NM_021921	60597.0	Mm.173337	NM_021921	ENSMUSG00000022619	Mapk8ip2	3230402N03Rik|AI847694|AW049958|IB2|Jip2|R75148	mitogen-activated protein kinase 8 interacting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-43966504-2	chr16	43966404	43966604	+	997.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12546.0	NM_001007460	332175.0	Mm.327852	NM_001007460	ENSMUSG00000036304	Zdhhc23	Gm1751|Gm779|nidd	zinc finger, DHHC domain containing 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-86788520-3	chr17	86788428	86788628	+	902.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010137, intron 1 of 15)	intron (NM_010137, intron 1 of 15)	34664.0	NM_010137	13819.0	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-79735705-2	chr10	79735605	79735805	+	579.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_172551)	TTS (NM_172551)	10876.0	NM_172551	216151.0	Mm.39001	NM_172551	ENSMUSG00000020329	Polrmt	1110018N15Rik|4932416K13	polymerase (RNA) mitochondrial (DNA directed)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-42762334-4	chr10	42762225	42762425	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359285, intron 1 of 19)	intron (NM_001359285, intron 1 of 19)	829.0	NM_153055	140740.0	Mm.214344	NM_153055	ENSMUSG00000019802	Sec63	5730478J10Rik|AI649014|AW319215	SEC63-like (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-156681393-1	chr1	156681293	156681493	+	1000.0	f1_c57bl6.idr	3' UTR (NM_145413, exon 8 of 8)	3' UTR (NM_145413, exon 8 of 8)	-7054.0	NM_023141	30935.0	Mm.206737	NM_023141	ENSMUSG00000060519	Tor3a	Adir	torsin family 3, member A	protein-coding	1.93642036555901	3.64037445022045	3.06277265914417	3.74515731679022	2.14998468724073	3.5008058514984	2.70429693757573	4.44863313864863	0.359344766547546	0.628480982316693	0.981044028886007
Merged-chr2-147014431-3	chr2	147014321	147014521	+	693.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356402, intron 1 of 28)	B1_Mur1|SINE|Alu	1422.0	NM_001356402	24128.0	Mm.3065	NM_011917	ENSMUSG00000027433	Xrn2	-	5'-3' exoribonuclease 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126746275-4	chr7	126746163	126746363	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	-13363.0	NM_011952	26417.0	Mm.8385	NM_011952	ENSMUSG00000063065	Mapk3	Erk-1|Erk1|Ert2|Esrk1|Mnk1|Mtap2k|Prkm3|p44|p44erk1|p44mapk	mitogen-activated protein kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-46532337-2	chr18	46532237	46532437	+	892.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6366.0	NM_173423	240263.0	Mm.38249	NM_173423	ENSMUSG00000033319	Fem1c	2610312A07Rik|3632443A22Rik|AI646567	fem-1 homolog c (C.elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-56163171-3	chr10	56163062	56163262	+	646.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033385, intron 15 of 32)	intron (NM_001033385, intron 15 of 32)	56245.0	NM_001163833	73390.0	Mm.181475	NM_133751	ENSMUSG00000047669	Msl3l2	1700060H10Rik	MSL3 like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-102811967-2	chr14	102811867	102812067	+	592.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	170665.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-60333338-3	chr11	60333255	60333455	+	907.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359810, intron 1 of 12)	intron (NM_001359810, intron 1 of 12)	19550.0	NM_153080	216810.0	Mm.218875	NM_153080	ENSMUSG00000000538	Tom1l2	2900016I08Rik|A730055F12Rik|AU042072|Srebf1	target of myb1-like 2 (chicken)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88436936-4	chr3	88436816	88437016	+	979.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001163491, exon 15 of 15)	exon (NM_001163491, exon 15 of 15)	4035.0	NR_105978	102465611.0		NR_105978	ENSMUSG00000098655	Mir7011	Gm27677|mmu-mir-7011	microRNA 7011	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-114730342-4	chr9	114730223	114730423	+	913.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026036)	promoter-TSS (NM_026036)	-880.0	NM_026036	67213.0	Mm.28858	NM_026036	ENSMUSG00000032434	Cmtm6	2810051A14Rik|AA536733|Cklfsf6	CKLF-like MARVEL transmembrane domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-9884560-2	chr2	9884460	9884660	+	754.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_024257, exon 5 of 5)	non-coding (NR_024257, exon 5 of 5)	3314.0	NR_024257	381347.0	Mm.441450	NR_024257		4930412O13Rik	Gm10853	RIKEN cDNA 4930412O13 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-75185980-4	chr14	75185904	75186104	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008879, intron 2 of 16)	intron (NM_008879, intron 2 of 16)	49579.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-78917356-1	chr17	78917256	78917456	+	554.0	f1_balb.idr	intron (NM_001177403, intron 1 of 4)	intron (NM_001177403, intron 1 of 4)	857.0	NM_001177402	68554.0	Mm.391820	NM_001177402	ENSMUSG00000062691	Cebpzos	1110001A16Rik	CCAAT/enhancer binding protein (C/EBP), zeta, opposite strand	protein-coding	-0.914587585352826	-1.14968844836017	-1.16012564310979	-1.16869906563582	-0.801023986531728	-1.14742666471813	-1.15776289099527	-1.16716442710272	0.46649237519341	0.890119923761052	1
Merged-chr13-23581028-2	chr13	23580928	23581128	+	988.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175654)	promoter-TSS (NM_175654)	-574.0	NM_175654	319156.0	Mm.260530	NM_175654	ENSMUSG00000061482	Hist1h4d	-	histone cluster 1, H4d	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-58933293-4	chr15	58933205	58933405	+	873.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023172)	promoter-TSS (NM_023172)	425.0	NM_175151	69694.0	Mm.383230	NM_175151	ENSMUSG00000050891	Tatdn1	2310079P03Rik|CDA11	TatD DNase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-25103132-4	chr8	25103021	25103221	+	629.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155282, intron 1 of 1)	CpG	942.0	NR_155282	74744.0	Mm.117802	NR_155282		5830408C22Rik	2700026D01Rik	RIKEN cDNA 5830408C22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-94567502-2	chr16	94567402	94567602	+	726.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-2704.0	NM_007890	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98774869-1	chr11	98774769	98774969	+	1000.0	f0_c57.idr	5' UTR (NM_145434, exon 1 of 8)	5' UTR (NM_145434, exon 1 of 8)	508.0	NM_145434	217166.0	Mm.390397	NM_145434	ENSMUSG00000020889	Nr1d1	A530070C09Rik|R75201	nuclear receptor subfamily 1, group D, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-89200047-1	chr9	89199947	89200147	+	646.0	f0_balb.idr	intron (NM_007534, intron 1 of 1)	B2_Mm2|SINE|B2	774.0	NM_007534	12045.0	Mm.479217	NM_007534	ENSMUSG00000089929	Bcl2a1b	A1-b	B cell leukemia/lymphoma 2 related protein A1b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-32276454-2	chr19	32276354	32276554	+	886.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001168525, intron 2 of 9)	intron (NM_001168525, intron 2 of 9)	-65441.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56998825-2	chr17	56998725	56998925	+	955.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_008954)	TTS (NM_008954)	1280.0	NM_008954	19197.0	Mm.86487	NM_008954	ENSMUSG00000002664	Pspn	PSP	persephin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131698968-4	chr1	131698882	131699082	+	958.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311096, intron 4 of 4)	intron (NM_001311096, intron 4 of 4)	10287.0	NM_145509	226421.0	Mm.44508	NM_145509	ENSMUSG00000052688	Rab7b	5430435G22Rik	RAB7B, member RAS oncogene family	protein-coding	4.66829045676178	4.48339223080291	3.9273513556619	4.61672768158882	3.50552068770402	3.57167560733441	2.40073391381561	4.47982067835437	-1.02906443238401	0.0485904604353307	0.32086715275759
Merged-chr7-65500893-3	chr7	65500882	65501082	+	851.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-81049.0	NR_131060	407810.0	Mm.249337	NR_131060	ENSMUSG00000086662	BC046251	-	cDNA sequence BC046251	ncRNA	-1.50853547051926	-1.31539791179768	-1.48513758460844	-1.4934693947842	-1.50618095824544	-1.1536032543236	-1.48284141851482	-1.49197800474628	0.918985020934121	0.788442843202987	1
Merged-chr13-75994529-1	chr13	75994429	75994629	+	675.0	f1_c57bl6.idr	intron (NM_029343, intron 4 of 4)	intron (NM_029343, intron 4 of 4)	24033.0	NM_178916	218341.0	Mm.266515	NM_178916	ENSMUSG00000043190	Rfesd	AI256775|D030068K09	Rieske (Fe-S) domain containing	protein-coding	-1.22315906685268	-1.19557143632602	-1.20673282037136	-0.55836125556573	-1.22265483704505	-1.19315271784257	-1.20420612767407	-1.21425999345206	-2.67891099987134	0.437057736398543	1
Merged-chr7-143784222-1	chr7	143784122	143784322	+	677.5	f0_balb.idr	5' UTR (NM_175534, exon 1 of 2)	5' UTR (NM_175534, exon 1 of 2)	278.0	NM_175534	244238.0	Mm.183561	NM_175534	ENSMUSG00000048965	Mrgpre	C130069N09Rik|Ebrt3|Mgrf|MrgE	MAS-related GPR, member E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-67933194-4	chr18	67933064	67933264	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172631)	promoter-TSS (NM_172631)	-9.0	NM_172631	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6058432-2	chr19	6058332	6058532	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026246)	promoter-TSS (NM_026246)	465.0	NM_001190436	14109.0	Mm.329631	NM_007990	ENSMUSG00000038274	Fau	MNSFbeta	Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed (fox derived)	protein-coding	-0.121530565444103	-0.104775520493612	-0.110249093188658	0.782430527226996	0.162621427034951	0.100937184180807	-0.109040600627465	0.0597218896266684	-0.988193104856553	0.647755161752902	1
Merged-chr17-23790070-2	chr17	23790002	23790202	+	978.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-3886.0	NM_001357140	76917.0	Mm.269613	NM_029798	ENSMUSG00000023911	Flywch2	2810417J12Rik|3010014L17Rik|AW548203	FLYWCH family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-25499114-4	chr5	25499034	25499234	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081383)	promoter-TSS (NM_001081383)	-351.0	NM_001081383	231051.0	Mm.332268	NM_001081383	ENSMUSG00000038056	Kmt2c	E330008K23Rik|HALR|Mll3|mKIAA1506	lysine (K)-specific methyltransferase 2C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-52084354-2	chr2	52084254	52084454	+	820.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355414, intron 9 of 35)	intron (NM_001355414, intron 9 of 35)	11517.0	NM_175238	51869.0	Mm.254530	NM_175238	ENSMUSG00000036202	Rif1	5730435J01Rik|6530403D07Rik|AU016181|AW549474|D2Ertd145e	replication timing regulatory factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88627154-2	chr3	88627054	88627254	+	691.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001198913, intron 1 of 21)	intron (NM_001198913, intron 1 of 21)	5760.0	NM_001198912	16800.0	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-23579206-2	chr13	23579106	23579306	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2396.0	NM_175654	319156.0	Mm.260530	NM_175654	ENSMUSG00000061482	Hist1h4d	-	histone cluster 1, H4d	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-40750555-2	chr5	40750455	40750655	+	907.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	957136.0	NM_001310592	100972.0	Mm.41555	NM_027295	ENSMUSG00000029128	Rab28	2700023P08Rik|AW496496	RAB28, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-153900754-2	chr1	153900654	153900854	+	984.3333130000001	f1_balb.idr|f1_c57bl6.idr	TTS (NR_106194)	TTS (NR_106194)	825.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-108509386-2	chr6	108509286	108509486	+	682.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 54 of 61)	intron (NM_010585, intron 54 of 61)	19643.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-173739712-4	chr1	173739623	173739823	+	745.041687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001204910, intron 1 of 7)	intron (NM_001204910, intron 1 of 7)	2086.0	NM_001204910	226691.0	Mm.440876	NM_001204910	ENSMUSG00000073490	Ifi207	AI607873|Pyhin-A|pyhinA	interferon activated gene 207	protein-coding	1.75826611817935	1.38587472233278	0.807033464751836	1.41610411772432	1.34791748165915	0.824010965460339	1.59088118106404	0.798063031317304	-0.740895334431867	0.603181402022137	0.973565005745828
Merged-chr13-42337227-4	chr13	42337130	42337330	+	879.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35754.0	NM_010104	13614.0	Mm.14543	NM_010104	ENSMUSG00000021367	Edn1	ET-1|PPET1|preproET	endothelin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-67405797-4	chr17	67405693	67405893	+	821.950012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51302.0	NM_001357625	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	4.46200886983319	3.95991162772058	1.88139908142441	3.99624739410738	4.41857887507684	5.28690279586988	4.48448235148676	4.77486705132112	1.18365919924867	0.0257953113031597	0.21403329530796
Merged-chr5-137630240-4	chr5	137630134	137630334	+	772.700012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033148, intron 1 of 21)	intron (NR_033148, intron 1 of 21)	1111.0	NR_033148	100316903.0	Mm.200763	NR_033148		Gm20605	Lrch4-sap25	predicted gene 20605	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-97241593-4	chr10	97241459	97241659	+	933.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-181919.0	NR_039547	100628616.0		NR_039547	ENSMUSG00000105557	Mir3966	mmu-mir-3966|mu-mir-3966	microRNA 3966	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-95851323-2	chr8	95851223	95851423	+	786.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172758, intron 2 of 11)	B1F|SINE|Alu	2168.0	NM_172758	234595.0	Mm.29267	NM_172758	ENSMUSG00000036534	Slc38a7	D430050E18	solute carrier family 38, member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-141082356-2	chr5	141082256	141082456	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-81760.0	NM_175362	108723.0	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19318325-2	chr7	19318225	19318425	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8280.0	NM_001347586	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-90081666-5	chr3	90081535	90081735	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357581, intron 1 of 8)	intron (NM_001357581, intron 1 of 8)	2114.0	NM_001293749	59069.0	Mm.240839	NM_022314	ENSMUSG00000027940	Tpm3	TM30nm|TMnm|Tm5NM|Tpm-5|Tpm5|Trop-5|gamma-TM|hTM30nm|hTMnm	tropomyosin 3, gamma	protein-coding	3.75146414827232	2.00104497287735	2.95315984676288	3.25611566500101	3.99315520765887	2.01750758841718	3.53779345275294	3.69384490450704	0.551951588586655	0.438868977876947	0.909130714404946
Merged-chr5-65254090-2	chr5	65253990	65254190	+	697.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359879, intron 31 of 35)	intron (NM_001359879, intron 31 of 35)	54394.0	NM_153391	213081.0	Mm.127550	NM_153391	ENSMUSG00000037890	Wdr19	C330027H04Rik|D330023L08Rik|DYF2|Ift144|PWDMP|mKIAA1638	WD repeat domain 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88468208-2	chr3	88468108	88468308	+	761.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15-int|LTR|ERVL	-7026.0	NM_001163489	20351.0	Mm.439752	NM_013658	ENSMUSG00000028064	Sema4a	AI132332|SemB|Semab	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-97312086-4	chr15	97311993	97312193	+	942.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172293, intron 3 of 5)	intron (NM_172293, intron 3 of 5)	-64806.0	NM_001164602	105827.0	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34306593-4	chr17	34306485	34306685	+	962.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010382, intron 1 of 5)	intron (NM_010382, intron 1 of 5)	718.0	NM_010382	14969.0	Mm.22564	NM_010382	ENSMUSG00000060586	H2-Eb1	Eb|H-2Eb|H2Eb|Ia-4|Ia4	histocompatibility 2, class II antigen E beta	protein-coding	4.10607112706854	3.91482602882234	2.25070659545405	2.3750488949089	4.42384719463872	4.19566485426772	3.08956000649806	3.55561806372944	0.700911889790651	0.280821925306489	0.783558479029594
Merged-chr15-98934548-4	chr15	98934452	98934652	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011654)	promoter-TSS (NM_011654)	-162.0	NM_011654	22143.0	Mm.392113	NM_011654	ENSMUSG00000023004	Tuba1b	Tuba2	tubulin, alpha 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-61096116-2	chr10	61096016	61096216	+	917.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6785.0	NM_025273	13180.0	Mm.39473	NM_025273	ENSMUSG00000020098	Pcbd1	Dcoh|Pcbd|Pcd|Phs	pterin 4 alpha carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-51531037-4	chr10	51530948	51531148	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTRIS3|LTR|ERV1	40150.0	NM_013532	14728.0	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-15657514-4	chr17	15657419	15657619	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	25731.0	NR_045431	71008.0	Mm.399492	NR_045431		4933401D09Rik	-	RIKEN cDNA 4933401D09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-21703208-2	chr5	21703108	21703308	+	734.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1586.0	NM_001359965	242864.0	Mm.153292	NM_178728	ENSMUSG00000044968	Napepld	A530089G06|Mbldc1|NAPE-PLD	N-acyl phosphatidylethanolamine phospholipase D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-7887147-3	chr17	7886986	7887186	+	869.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38914.0	NM_145968	72536.0	Mm.119680	NM_145968	ENSMUSG00000033450	Tagap	2610315E15Rik|TRD|Tcd-1|Tcd1|Tcd1a|tcs-1|tcs1	T cell activation Rho GTPase activating protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-55467049-4	chr12	55466964	55467164	+	976.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25583.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-102421668-2	chr15	102421568	102421768	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013672, intron 3 of 5)	intron (NM_013672, intron 3 of 5)	15352.0	NM_013672	20683.0	Mm.4618	NM_013672	ENSMUSG00000001280	Sp1	1110003E12Rik|AA450830|AI845540|Sp1-1	trans-acting transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41325216-2	chr19	41325116	41325316	+	604.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 6 of 16)	B3|SINE|B2	59854.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-121377170-2	chr5	121377070	121377270	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359947, intron 6 of 11)	B2_Mm1t|SINE|B2	8239.0	NM_001359947	231712.0	Mm.20488	NM_172275	ENSMUSG00000042726	Trafd1	1110008K06Rik|Fln29	TRAF type zinc finger domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-66045516-1	chr12	66045416	66045616	+	650.0	f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	238885.0	NM_001162933	238217.0	Mm.188575	NM_001162933	ENSMUSG00000060499	Rpl10l	EG238217	ribosomal protein L10-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-45280532-4	chr2	45280433	45280633	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-163091.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-121454270-3	chr10	121454180	121454380	+	938.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138956, intron 1 of 4)	intron (NM_138956, intron 1 of 4)	21970.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	2.36067170625511	3.00281057689598	3.13472893001095	2.33646862829577	4.04484590390393	3.66263823770912	3.69452428733785	4.56067694217347	2.01770752521245	0.000529918760866886	0.0116731308926822
Merged-chr11-117076807-4	chr11	117076702	117076902	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027059)	promoter-TSS (NR_027059)	19.0	NR_027059	76972.0	Mm.309167	NR_027059	ENSMUSG00000086859	Snhg20	2810008D09Rik	small nucleolar RNA host gene 20	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-155075321-1	chr2	155075221	155075421	+	568.0	f1_balb.idr	promoter-TSS (NM_016661)	promoter-TSS (NM_016661)	-824.0	NM_016661	269378.0	Mm.330692	NM_016661	ENSMUSG00000027597	Ahcy	AA987153|AL024110|CuBP|SAHH	S-adenosylhomocysteine hydrolase	protein-coding	0.822802804416963	0.895224642864453	0.256164225630551	0.250670510162656	0.395838206489946	0.264853446744913	0.257731380772617	0.909463615542642	-0.603883945285738	0.754563890352173	1
Merged-chr10-68210254-1	chr10	68210154	68210354	+	623.0	f1_balb.idr	intron (NM_023598, intron 3 of 9)	intron (NM_023598, intron 3 of 9)	68472.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	-1.02399571608706	-1.00526265269726	-1.01704094937231	-1.020509632451	-0.749011178236936	-0.508513708853148	-1.01437460117799	-1.02014231438484	2.8633379022308	0.356921943934824	1
Merged-chr1-144308474-4	chr1	144308393	144308593	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59389.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-98608237-2	chr10	98608137	98608337	+	939.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-256370.0	NR_045179	667438.0	Mm.414522	NR_045179	ENSMUSG00000112896	Gm8633	EG667438	predicted gene 8633	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120795198-2	chr8	120795098	120795298	+	849.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56559.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-43921294-4	chr7	43921194	43921394	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12477.0	NM_174865	317652.0	Mm.389896	NM_174865	ENSMUSG00000055193	Klk15	-	kallikrein related-peptidase 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-29603447-3	chr17	29603351	29603551	+	763.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198647, intron 12 of 12)	intron (NM_198647, intron 12 of 12)	-7146.0	NR_045447	74092.0	Mm.396264	NR_045447	ENSMUSG00000089900	Tbc1d22bos	0610038L08Rik	TBC1 domain family, member 22B, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-142316878-1	chr7	142316778	142316978	+	755.0	f1_balb.idr	Intergenic	Intergenic	13376.0	NM_015809	50775.0	Mm.389990	NM_015809	ENSMUSG00000045236	Krtap5-4	-	keratin associated protein 5-4	protein-coding	0.226780733786403	0.812484568429134	0.0626185168188931	0.0552925933614007	0.0447502293541563	0.0740397447740914	0.0646932065029372	1.33117518058851	0.975532806514338	0.635934632239774	1
Merged-chr18-38389928-2	chr18	38389828	38390028	+	601.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR12H|LTR|ERVK	-28979.0	NM_022996	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-125380082-3	chr5	125380000	125380200	+	980.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9917.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-72430382-1	chr11	72430282	72430482	+	624.0	f1_c57bl6.idr	Intergenic	B1_Mur3|SINE|Alu	-5144.0	NM_027819	71522.0	Mm.23336	NM_027819	ENSMUSG00000040471	Ggt6	9030405D14Rik|AI427679|AW490214	gamma-glutamyltransferase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126814528-2	chr8	126814428	126814628	+	679.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34492.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-125472126-4	chr7	125472031	125472231	+	892.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026330, exon 3 of 8)	exon (NM_026330, exon 3 of 8)	19411.0	NM_001360659	67711.0	Mm.4467	NM_026330	ENSMUSG00000030750	Nsmce1	2510027N19Rik	NSE1 homolog, SMC5-SMC6 complex component	protein-coding	3.40428116926756	4.39733164981418	3.61843726240827	3.10514979617254	3.0550520879168	3.43777109778972	3.22505871857422	1.60943428613762	-1.1390300012287	0.0900128948791057	0.463560149563917
Merged-chr15-74914697-2	chr15	74914597	74914797	+	607.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32993.0	NM_025929	67038.0	Mm.154566	NM_025929	ENSMUSG00000063522	2010109I03Rik	Ly6m	RIKEN cDNA 2010109I03 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-20780087-2	chr18	20779987	20780187	+	798.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33683.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-8778143-3	chr6	8778015	8778215	+	911.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010492, exon 1 of 14)	5' UTR (NM_010492, exon 1 of 14)	369.0	NM_010492	15893.0	Mm.275683	NM_010492	ENSMUSG00000062995	Ica1	69kDa|ICA69	islet cell autoantigen 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-61169214-2	chr9	61169114	61169314	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30699.0	NR_045705	619328.0	Mm.325722	NR_045705	ENSMUSG00000110998	I730028E13Rik	-	RIKEN cDNA I730028E13 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-30694875-2	chr13	30694775	30694975	+	744.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134068, intron 3 of 7)	intron (NM_134068, intron 3 of 7)	34816.0	NM_134068	105352.0	Mm.289646	NM_134068	ENSMUSG00000069255	Dusp22	JKAP|JSP1|LMW-DSP2|MKPX	dual specificity phosphatase 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-63782860-4	chr9	63782767	63782967	+	674.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24873.0	NM_016769	17127.0	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-88368070-4	chr17	88367963	88368163	+	959.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72641.0	NM_001355743	14236.0	Mm.112824	NM_180974	ENSMUSG00000034998	Foxn2	3230402J05Rik|6030465J18Rik|Fkh19|Foxn1|HTLF	forkhead box N2	protein-coding	3.42057724724281	2.30955688353188	3.05674391077602	2.46128227435191	2.92295801392385	2.13276569947396	2.41086732580269	3.06733338448742	-0.388798873858311	0.601866723828516	0.973429960802861
Merged-chr2-144527518-4	chr2	144527421	144527621	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029763)	promoter-TSS (NM_029763)	-107.0	NM_001360362	241688.0	Mm.442156	NM_172859	ENSMUSG00000037259	Dzank1	2810039F03Rik|6330439K17Rik|Ankrd64	double zinc ribbon and ankyrin repeat domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-104640862-2	chr3	104640762	104640962	+	594.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009196, intron 1 of 4)	intron (NM_009196, intron 1 of 4)	2198.0	NM_009196	20501.0	Mm.9086	NM_009196	ENSMUSG00000032902	Slc16a1	AL022710|Mct1	solute carrier family 16 (monocarboxylic acid transporters), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128769710-2	chr2	128769601	128769801	+	874.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 8 of 18)	intron (NM_008587, intron 8 of 18)	-48602.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	1.39242711955111	1.72958243863761	2.41847523070381	1.79188951998444	1.96269414306558	1.74129493166657	2.1273273325054	2.59350856436839	0.670896863565086	0.490423063060437	0.934345795476137
Merged-chr6-142994414-1	chr6	142994314	142994514	+	800.0	f0_balb.idr	Intergenic	Intergenic	-29962.0	NM_011374	20449.0	Mm.260838	NM_011374	ENSMUSG00000030283	St8sia1	9330109E03Rik|GD3S|Sia-T|Siat8|Siat8a	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-20198102-4	chr3	20198006	20198206	+	965.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24253.0	NR_105974	102465609.0		NR_105974	ENSMUSG00000099105	Mir7007	Gm27897|mmu-mir-7007	microRNA 7007	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-11350354-3	chr10	11350266	11350466	+	789.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010146, intron 1 of 3)	intron (NM_010146, intron 1 of 3)	6921.0	NM_010146	13853.0	Mm.89946	NM_010146	ENSMUSG00000055493	Epm2a	TG-B|Tg(TcraK,TcrbK)TG-BFlv	epilepsy, progressive myoclonic epilepsy, type 2 gene alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-158141235-2	chr2	158141135	158141335	+	895.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009373, intron 2 of 12)	intron (NM_009373, intron 2 of 12)	5157.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-34663926-2	chr12	34663832	34664032	+	833.583374	f0_c57.idr|f1_c57bl6.idr	intron (NM_001271386, intron 3 of 27)	intron (NM_001271386, intron 3 of 27)	-135043.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	2.91490790098853	2.0158206682929	3.77342833587354	3.53840683764459	1.05075631676357	1.21430570344365	1.16498994084545	2.05602171069993	-3.96234472273628	0.000153159380895516	0.00435645482672834
Merged-chr11-106919605-2	chr11	106919505	106919705	+	687.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_025481, intron 1 of 18)	intron (NM_025481, intron 1 of 18)	1110.0	NM_025481	66313.0	Mm.340955	NM_025481	ENSMUSG00000018363	Smurf2	2810411E22Rik|AI558114|AI649275	SMAD specific E3 ubiquitin protein ligase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-19301471-6	chr3	19301353	19301553	+	748.805542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122759, intron 1 of 12)	intron (NM_001122759, intron 1 of 12)	9869.0	NM_001122759	18583.0	Mm.355614	NM_008802	ENSMUSG00000069094	Pde7a	AU015378|AW047537	phosphodiesterase 7A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-44957386-4	chr2	44957307	44957507	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	65770.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-155869521-4	chr4	155869417	155869617	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028020)	promoter-TSS (NM_028020)	-50.0	NM_028020	71957.0	Mm.475640	NM_028020	ENSMUSG00000029034	Ints11	2410006F12Rik|AU044035|Cpsf3l	integrator complex subunit 11	protein-coding	4.57207080591584	4.30131838551703	5.47486148576091	4.93686090302968	1.17504215935281	1.455529239622	1.37267037603586	1.29611533472083	-7.83299740677974	1.14045090747426e-12	3.76096974201516e-10
Merged-chr5-136167407-1	chr5	136167307	136167507	+	949.0	f1_c57bl6.idr	intron (NM_178751, intron 1 of 2)	MLTR11B|LTR|ERVK	3249.0	NM_178751	269717.0	Mm.308396	NM_178751	ENSMUSG00000039747	Orai2	A730041O15Rik|Tmem142b	ORAI calcium release-activated calcium modulator 2	protein-coding	-0.953721354153451	-1.41025554057125	-1.42001056191158	-1.42802362688808	-1.44024889148474	-1.40814158675276	-1.41780223890411	-1.42658929208844	-2.11310844444413	0.543369238581748	1
Merged-chr2-77268731-1	chr2	77268631	77268831	+	616.0	f0_balb.idr	intron (NM_175465, intron 1 of 17)	intron (NM_175465, intron 1 of 17)	11861.0	NM_175465	228071.0	Mm.27120	NM_175465	ENSMUSG00000042272	Sestd1	1500031J16Rik|A930010O20|Solo/Trio8	SEC14 and spectrin domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-23549629-2	chr17	23549529	23549729	+	708.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1170.0	NR_126485	320020.0	Mm.445111	NR_126484		6330415G19Rik	-	RIKEN cDNA 6330415G19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45168805-1	chr7	45168705	45168905	+	564.0	f1_c57bl6.idr	exon (NM_182993, exon 2 of 12)	exon (NM_182993, exon 2 of 12)	-4498.0	NR_106022	102465638.0		NR_106022	ENSMUSG00000106470	Mir7055	mmu-mir-7055	microRNA 7055	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-55489444-3	chr4	55489294	55489494	+	637.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43081.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	1.96509334214526	2.21310292738099	2.77213133535516	1.63868294314079	2.18698715661628	1.2664672075705	1.4897444502744	2.48243420811134	-0.615230491088561	0.543331065145829	0.955568179363772
Merged-chr10-117825067-4	chr10	117824955	117825155	+	814.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024457, intron 1 of 7)	intron (NM_024457, intron 1 of 7)	20919.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-26498383-4	chr2	26498282	26498482	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008714, intron 2 of 33)	intron (NM_008714, intron 2 of 33)	5440.0	NM_008714	18128.0	Mm.290610	NM_008714	ENSMUSG00000026923	Notch1	9930111A19Rik|Mis6|N1|Tan1|lin-12	notch 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-83446039-2	chr9	83445939	83446139	+	657.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_102437, exon 2 of 3)	non-coding (NR_102437, exon 2 of 3)	-4912.0	NM_029434	75782.0	Mm.199698	NM_027448	ENSMUSG00000032258	Lca5	4930431B11Rik|5730406O13Rik|AV274874|ORF64	Leber congenital amaurosis 5 (human)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100351558-2	chr11	100351458	100351658	+	607.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359052, intron 8 of 12)	intron (NM_001359052, intron 8 of 12)	4570.0	NM_001359052	15114.0	Mm.281700	NM_010404	ENSMUSG00000006930	Hap1	HAP-1	huntingtin-associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141372347-4	chr7	141372240	141372440	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7230.0	NR_033532	320871.0	Mm.475463	NM_177280	ENSMUSG00000086844	B230206H07Rik	-	RIKEN cDNA B230206H07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-33628399-2	chr17	33628299	33628499	+	592.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026712)	promoter-TSS (NM_026712)	-693.0	NR_034153	328801.0	Mm.181488	NM_026712	ENSMUSG00000073423	Zfp414	0610030H11Rik|Znf414	zinc finger protein 414	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-138041283-3	chr4	138041156	138041356	+	783.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355699, intron 1 of 32)	B3A|SINE|B2	43431.0	NM_001355700	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	1.36455049713348	0.703928578657424	1.1826401904618	0.685166795771599	0.970651695148531	1.48425267768678	0.890679338991969	1.15160521650474	0.524109399281716	0.717001324861892	0.998431161219273
Merged-chr6-39778141-3	chr6	39778014	39778214	+	680.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32822.0	NM_010270	14548.0	Mm.377071	NM_010270	ENSMUSG00000029918	Mrps33	AI841153|CGI-139|Gdap3|MRP-S33|PTD003	mitochondrial ribosomal protein S33	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81407758-4	chr10	81407661	81407861	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026756, intron 5 of 8)	intron (NM_026756, intron 5 of 8)	-1814.0	NR_152732	102634174.0	Mm.392213	NR_152732	ENSMUSG00000085327	Gm16104	-	predicted gene 16104	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80140857-2	chr10	80140757	80140957	+	781.833374	f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 1 of 4)	intron (NR_038088, intron 1 of 4)	-1418.0	NM_001347092	66043.0	Mm.278560	NM_025313	ENSMUSG00000003072	Atp5d	0610008F14Rik|1500000I11Rik|AA960090|AI876556|AU020773|Atp5f1d|C85518	ATP synthase, H+ transporting, mitochondrial F1 complex, delta subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-95300413-4	chr10	95300297	95300497	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001330138, intron 2 of 2)	ORR1E|LTR|ERVL-MaLR	23312.0	NM_001330138	12905.0	Mm.473739	NM_009950	ENSMUSG00000045867	Cradd	RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-78478916-2	chr9	78478816	78479016	+	746.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_010106, intron 7 of 7)	intron (NM_010106, intron 7 of 7)	2808.0	NM_010106	13627.0	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120795394-2	chr11	120795294	120795494	+	814.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026824, intron 2 of 13)	intron (NM_026824, intron 2 of 13)	1001.0	NM_026824	68730.0	Mm.180622	NM_026824	ENSMUSG00000025155	Dus1l	1110032N12Rik	dihydrouridine synthase 1-like (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-58919846-1	chr11	58919746	58919946	+	715.0	f1_c57bl6.idr	intron (NM_138678, intron 3 of 4)	GA-rich|Low_complexity|Low_complexity	1789.0	NM_138678	192194.0	Mm.22540	NM_138678	ENSMUSG00000020490	Btnl10	BUTR-1|Butr1	butyrophilin-like 10	protein-coding	1.1779109994813	2.56104645456469	2.80973376344508	1.44537600915079	1.18747658508773	1.55904094065893	1.50310525434687	1.45338173534007	-2.05539153070444	0.059869055529963	0.362538153557451
Merged-chr8-84842250-1	chr8	84842150	84842350	+	543.0	f1_balb.idr	3' UTR (NM_007591, exon 9 of 9)	3' UTR (NM_007591, exon 9 of 9)	-1585.0	NM_009010	19358.0	Mm.255539	NM_009010	ENSMUSG00000003813	Rad23a	2310040P19Rik|AL024030|HR23A|mHR23A	RAD23 homolog A, nucleotide excision repair protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-51422737-4	chr10	51422637	51422837	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13D3|LTR|ERVK	-57875.0	NM_008147	14727.0	Mm.439661	NM_008147	ENSMUSG00000112023	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-61370107-2	chr9	61370007	61370207	+	895.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2259.0	NM_001083928	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-12549349-2	chr19	12549249	12549449	+	659.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	MERVK26-int|LTR|ERVK	-24161.0	NM_001346545	107373.0	Mm.1643	NM_026640	ENSMUSG00000024691	Fam111a	4632417K18Rik|AW413625	family with sequence similarity 111, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47611546-4	chr17	47611437	47611637	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020048)	promoter-TSS (NM_020048)	-45.0	NM_016859	53414.0	Mm.472101	NM_016859	ENSMUSG00000023988	Bysl	Bys|Enp1	bystin-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-24850402-1	chr7	24850302	24850502	+	672.0	f0_balb.idr	Intergenic	Intergenic	19289.0	NM_182785	232973.0	Mm.189648	NM_182785	ENSMUSG00000062732	Lypd4	4933400F01Rik	Ly6/Plaur domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-134759746-4	chr4	134759655	134759855	+	925.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145554, intron 1 of 8)	intron (NM_145554, intron 1 of 8)	8249.0	NM_145554	100017.0	Mm.27486	NM_145554	ENSMUSG00000037295	Ldlrap1	AA691260|ARH2|Arh|Arh1|FHCB1|FHCB2	low density lipoprotein receptor adaptor protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-87712823-2	chr1	87712723	87712923	+	629.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110192, intron 23 of 26)	intron (NM_001110192, intron 23 of 26)	-43188.0	NM_029846	77040.0	Mm.272972	NM_029846	ENSMUSG00000026289	Atg16l1	1500009K01Rik|Apg16l|Atg16l|WDR30	autophagy related 16-like 1 (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-87812641-4	chr6	87812529	87812729	+	995.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_104478)	promoter-TSS (NR_104478)	-465.0	NR_104478	69834.0	Mm.37380	NM_133717	ENSMUSG00000030055	Rab43	1810048P08Rik|2500004H21Rik|AW490415	RAB43, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-17873825-3	chr14	17873725	17873925	+	797.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113417, intron 2 of 9)	intron (NM_001113417, intron 2 of 9)	-107819.0	NM_009380	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-22475710-4	chr9	22475619	22475819	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181316)	promoter-TSS (NM_181316)	4.0	NM_181316	319845.0	Mm.176725	NM_178415	ENSMUSG00000035919	Bbs9	E130103I17Rik	Bardet-Biedl syndrome 9 (human)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-19377392-4	chr13	19377302	19377502	+	853.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347485, intron 1 of 7)	intron (NM_001347485, intron 1 of 7)	18411.0	NM_024270	76205.0	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	-0.766278829938055	-0.88869720792903	-0.895687722202525	-0.493800839595096	-0.643603009301658	-0.886158707944059	-0.895119672701023	-0.897323720944462	-0.975164147516577	0.739246889688548	1
Merged-chr10-80938662-2	chr10	80938562	80938762	+	826.875	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8571.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-148495368-4	chr5	148495269	148495469	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56304.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90679282-4	chr2	90679216	90679416	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_021512, exon 2 of 37)	5' UTR (NM_021512, exon 2 of 37)	2101.0	NM_021512	59015.0	Mm.24532	NM_021512	ENSMUSG00000051329	Nup160	160kDa|2810011M03Rik|AA414952|AU020188|Gtl-13|Gtl1-13|Gtl13|mKIAA0197	nucleoporin 160	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-56641965-2	chr13	56641865	56642065	+	755.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32379.0	NR_155548	21810.0	Mm.14455	NM_009369	ENSMUSG00000035493	Tgfbi	68kDa|AI181842|AI747162|Beta-ig|big-h3	transforming growth factor, beta induced	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-89089183-4	chr18	89089086	89089286	+	930.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175542, intron 35 of 48)	ORR1E|LTR|ERVL-MaLR	-108241.0	NM_178687	225825.0	Mm.139293	NM_178687	ENSMUSG00000034028	Cd226	BC051526|DNAM-1|DNAM1|Pta1|TLiSA1	CD226 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-83714285-1	chr8	83714185	83714385	+	633.0	f1_c57bl6.idr	promoter-TSS (NM_197982)	promoter-TSS (NM_197982)	-892.0	NM_197982	68278.0	Mm.28222	NM_197982	ENSMUSG00000005481	Ddx39	2610307C23Rik|BAT1|DDXL|Ddx39a|URH49	DEAD (Asp-Glu-Ala-Asp) box polypeptide 39	protein-coding	-1.23460850737911	-1.20778397121128	-0.764630119593346	-1.22720560894177	-1.23414887269344	-1.20547328650897	-1.04825763330377	-1.22563779064292	-1.35544360464281	0.683796689557226	1
Merged-chr12-100925200-4	chr12	100925100	100925300	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026681, intron 25 of 29)	intron (NM_026681, intron 25 of 29)	-17002.0	NM_001177673	238377.0	Mm.32160	NM_175493	ENSMUSG00000047415	Gpr68	BB131428|Ogr1	G protein-coupled receptor 68	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4212565-2	chr19	4212465	4212665	+	748.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1673.0	NR_132308	105948585.0	Mm.32518	NR_132308		Gm45928	Clcf1-pold4	predicted gene, 45928	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-37419748-4	chr19	37419647	37419847	+	821.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010615, intron 21 of 21)	intron (NM_010615, intron 21 of 21)	-15094.0	NM_008245	15242.0	Mm.33896	NM_008245	ENSMUSG00000024986	Hhex	Hex|Hex1|Hhex-rs2|Prh|Prhx	hematopoietically expressed homeobox	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85496420-2	chr12	85496320	85496520	+	901.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22530.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101919917-5	chr11	101919841	101920041	+	778.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25587.0	NM_010791	17285.0	Mm.3404	NM_010791	ENSMUSG00000001493	Meox1	AI385561|D330041M02Rik|Mox-1|Mox1	mesenchyme homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-129545314-3	chr6	129545213	129545413	+	765.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12029.0	NR_045270	100504641.0	Mm.398286	NR_045270	ENSMUSG00000097675	1700101I11Rik	-	RIKEN cDNA 1700101I11 gene	ncRNA	0.684488831749741	0.130132314853688	0.123854391627401	0.118999001201155	0.391845460742049	0.131545196337608	0.913950772240156	0.291019999435039	1.13934016921124	0.571909787937795	1
Merged-chr16-91043990-4	chr16	91043905	91044105	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152264, intron 1 of 17)	CpG	374.0	NM_026110	67367.0	Mm.347	NM_026110	ENSMUSG00000022974	Paxbp1	1810007M14Rik|C21orf66|Gcfc|Gcfc1|Pax3/7bp	PAX3 and PAX7 binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-113641646-2	chr5	113641546	113641746	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359060, intron 2 of 4)	intron (NM_001359060, intron 2 of 4)	1957.0	NM_001359060	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99141287-4	chr7	99141189	99141389	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178635)	promoter-TSS (NM_178635)	-145.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-77761185-2	chr18	77761085	77761285	+	796.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357531, intron 6 of 10)	intron (NM_001357531, intron 6 of 10)	6614.0	NM_146089	225745.0	Mm.39293	NM_146089	ENSMUSG00000041840	Haus1	BC024400|Ccdc5|HEI-C	HAUS augmin-like complex, subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-155550643-3	chr4	155550546	155550746	+	843.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160016, intron 7 of 11)	intron (NM_001160016, intron 7 of 11)	-11735.0	NM_138671	192185.0	Mm.28347	NM_138671	ENSMUSG00000029063	Nadk	4432404C02Rik|BC004012	NAD kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-96792602-4	chr5	96792513	96792713	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013470)	promoter-TSS (NM_013470)	-772.0	NM_013470	11745.0	Mm.7214	NM_013470	ENSMUSG00000029484	Anxa3	Anx3	annexin A3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-150373058-4	chr1	150372948	150373148	+	660.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357579, intron 11 of 13)	intron (NM_001357579, intron 11 of 13)	-19790.0	NM_133780	108989.0	Mm.174256	NM_133780	ENSMUSG00000006005	Tpr	2610029M07Rik|C77892	translocated promoter region, nuclear basket protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-45388847-4	chr14	45388741	45388941	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019425)	promoter-TSS (NM_019425)	-45.0	NM_019425	54342.0	Mm.312945	NM_019425	ENSMUSG00000037722	Gnpnat1	AU017428|AU040593|EMeg32|Gpnat1|Gsnpat	glucosamine-phosphate N-acetyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-138085647-2	chr5	138085547	138085747	+	625.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029869, intron 1 of 3)	intron (NM_029869, intron 1 of 3)	563.0	NM_029869	74570.0	Mm.213114	NM_029869	ENSMUSG00000029729	Zkscan1	5930429A01Rik|9130423L19Rik|9230118B16Rik|AI646829|AI788588|C87323|KOX18|PHZ-37|ZNF139	zinc finger with KRAB and SCAN domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-44118223-4	chr16	44118119	44118319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007508, intron 1 of 14)	intron (NM_007508, intron 1 of 14)	21040.0	NM_001358203	11964.0	Mm.217787	NM_007508	ENSMUSG00000052459	Atp6v1a	AI647066|Atp6a1|Atp6a2|Atp6v1a1|VA68|VPP2	ATPase, H+ transporting, lysosomal V1 subunit A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-113242373-4	chr13	113242321	113242521	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32762.0	NM_023612	71690.0	Mm.38929	NM_023612	ENSMUSG00000042379	Esm1	0610042H23Rik|AV004503|ESM-1	endothelial cell-specific molecule 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-84074451-2	chr15	84074351	84074551	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9102.0	NM_029946	77627.0	Mm.196288	NM_029946	ENSMUSG00000022441	Efcab6	4931407K02Rik|4932408N08Rik|bM150J22.2|mKIAA1672	EF-hand calcium binding domain 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-99200511-3	chr9	99200423	99200623	+	697.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36716.0	NM_001244762	623459.0	Mm.260891	NM_001244762	ENSMUSG00000096316	Faiml	EG623459|Gm6432	Fas apoptotic inhibitory molecule like	protein-coding	1.63927560803186	0.933594219531369	1.79251668990429	1.40574331388963	1.21585129230002	1.6484575484138	1.5891027029426	0.908634062537	-0.395747393443069	0.756993057230738	0.998431161219273
Merged-chr18-56759332-4	chr18	56759225	56759425	+	878.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51512.0	NM_010721	16906.0	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80577640-7	chr10	80577557	80577757	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_078477)	promoter-TSS (NM_078477)	-361.0	NM_078477	118445.0	Mm.41513	NM_078477	ENSMUSG00000035397	Klf16	AI843742|BTEB4|DRRF	Kruppel-like factor 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-101083537-2	chr13	101083437	101083637	+	952.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-148590.0	NR_046158	328324.0	Mm.402274	NR_046158	ENSMUSG00000114590	5930438M14Rik	5930438M14	RIKEN cDNA 5930438M14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-111886783-1	chr4	111886683	111886883	+	566.0	f0_balb.idr	intron (NM_145551, intron 11 of 14)	intron (NM_145551, intron 11 of 14)	16013.0	NM_145551	230612.0	Mm.26630	NM_145551	ENSMUSG00000028544	Slc5a9	AI159731|SGLT4	solute carrier family 5 (sodium/glucose cotransporter), member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64029930-4	chr5	64029829	64030029	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15044.0	NR_045384	74757.0	Mm.159329	NR_045384	ENSMUSG00000106219	5830416I19Rik	-	RIKEN cDNA 5830416I19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-70858753-3	chr1	70858675	70858875	+	895.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177164, intron 3 of 3)	RMER15|LTR|ERVL	133060.0	NM_177164	320460.0	Mm.360649	NM_177164	ENSMUSG00000045648	Vwc2l	A830006F12Rik|Brl	von Willebrand factor C domain-containing protein 2-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-139599108-4	chr4	139598984	139599184	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205173, intron 1 of 8)	intron (NM_001205173, intron 1 of 8)	-23810.0	NM_175438	212647.0	Mm.273571	NM_175438	ENSMUSG00000028737	Aldh4a1	A930035F14Rik|Ahd-1|Ahd1|Aldh4|Aldh5a1|E330022C09|P5cd|P5cdh|P5cdhl|P5cdhs|Ssdh1	aldehyde dehydrogenase 4 family, member A1	protein-coding	5.56235117220408	5.34047669404771	4.19963351138005	5.40459103317197	4.86268831999191	5.37423841163951	4.16216675146711	5.04645746237804	-0.352160224114233	0.353795570519565	0.853132398390271
Merged-chr7-81842048-1	chr7	81841948	81842148	+	849.0	f0_balb.idr	Intergenic	Intergenic	-12617.0	NM_146193	83962.0	Mm.439893	NM_146193	ENSMUSG00000025103	Btbd1	1190005H08Rik	BTB (POZ) domain containing 1	protein-coding	0.927258790932339	0.819335075612611	0.780967923671813	0.409599459962692	0.399085385540122	1.43083996192711	0.621640073441656	0.410889630608062	0.296780554285376	0.860808449989849	1
Merged-chr2-29130260-3	chr2	29130137	29130337	+	960.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_198033, exon 4 of 26)	exon (NM_198033, exon 4 of 26)	5245.0	NM_198033	269254.0	Mm.41867	NM_198033	ENSMUSG00000043535	Setx	A130090N03|A930037J23Rik|AOA2|AW060766|Als4|SCAR1|Sen1|mKIAA0625	senataxin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91464070-4	chr16	91463979	91464179	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1025.0	NR_077219	100503120.0	Mm.387130	NR_077219	ENSMUSG00000084866	A930006K02Rik	-	RIKEN cDNA A930006K02 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46931401-4	chr8	46931306	46931506	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME3G|LINE|L1	-55481.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80102636-4	chr10	80102509	80102709	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183426)	promoter-TSS (NM_183426)	93.0	NM_183426	216161.0	Mm.262102	NM_183426	ENSMUSG00000035673	Sbno2	BC019206|F730040C21|Sno|Stno	strawberry notch 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-102574427-4	chr4	102574329	102574529	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019840, intron 6 of 14)	intron (NM_019840, intron 6 of 14)	4369.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	5.69058278505975	6.4451447846102	6.03648938597818	6.0335836428053	5.72937064661598	5.86973387684221	6.7732867752426	6.07640936355303	0.110369973270911	0.685820540228054	0.996533206832645
Merged-chr8-105157738-2	chr8	105157638	105157838	+	932.3333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12936.0	NM_001161457	12400.0	Mm.2018	NM_022309	ENSMUSG00000031885	Cbfb	AI893578|PEA2|PEBP2b|Pebp2|Pebpb2	core binding factor beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-45047671-4	chr19	45047598	45047798	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_155547, exon 1 of 11)	non-coding (NR_155547, exon 1 of 11)	122.0	NM_001362381	94280.0	Mm.36169	NM_053197	ENSMUSG00000025212	Sfxn3	-	sideroflexin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-64627346-4	chr14	64627254	64627454	+	962.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB2|LINE|L1	-25177.0	NM_001081177	16554.0	Mm.23611	NM_001081177	ENSMUSG00000060012	Kif13b	5330429L19Rik|6030414C01|AI429803|C130021D12Rik|GAKIN	kinesin family member 13B	protein-coding	3.39400027207211	2.80497493918402	3.59981850807615	3.49937669662979	3.94663917555164	3.66476246677387	3.54423201551039	4.42732037459316	0.865189385890453	0.0990691201266999	0.489686062872897
Merged-chr11-118163002-2	chr11	118162902	118163102	+	612.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33783.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34033092-4	chr17	34032994	34033194	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205214, intron 2 of 9)	intron (NM_001205214, intron 2 of 9)	744.0	NM_001205215	20182.0	Mm.1243	NM_011306	ENSMUSG00000039656	Rxrb	AL023085|H-2RIIBP|Nr2b2|RCoR-1|Rub	retinoid X receptor beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111669385-4	chr12	111669340	111669540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_021273)	TTS (NM_021273)	2898.0	NM_021273	12709.0	Mm.16831	NM_021273	ENSMUSG00000001270	Ckb	B-CK|Bck|CPK-B|Ck-3|Ck3|Ckbb	creatine kinase, brain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5797754-6	chr19	5797638	5797838	+	893.111084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_002847, exon 1 of 1)	non-coding (NR_002847, exon 1 of 1)	-1757.0	NR_144621	109146451.0		NR_144621		Mascrna	-	Malat1-associated small cytoplasmic RNA	scRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101231208-3	chr15	101231108	101231308	+	691.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019518, intron 7 of 7)	intron (NM_019518, intron 7 of 7)	-6022.0	NR_045328	380977.0	Mm.399924	NR_045326	ENSMUSG00000097915	A330009N23Rik	-	RIKEN cDNA A330009N23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-53462642-2	chr17	53462542	53462742	+	695.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_172497, exon 1 of 13)	exon (NM_172497, exon 1 of 13)	679.0	NM_172497	211482.0	Mm.60887	NM_172497	ENSMUSG00000023931	Efhb	4921525D22Rik	EF hand domain family, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16102681-2	chr7	16102581	16102781	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025898, intron 1 of 10)	intron (NM_025898, intron 1 of 10)	4101.0	NM_025898	108124.0	Mm.104540	NM_025898	ENSMUSG00000006024	Napa	1500039N14Rik|AW209189|RA81|SNAP-alpha|SNAPA|SNARE|a-SNAP|hyh	N-ethylmaleimide sensitive fusion protein attachment protein alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-108333645-3	chr12	108333539	108333739	+	951.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010010)	promoter-TSS (NM_010010)	-677.0	NM_010010	13116.0	Mm.41911	NM_010010	ENSMUSG00000021259	Cyp46a1	CH24H|Cyp46	cytochrome P450, family 46, subfamily a, polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-86164668-2	chr17	86164568	86164768	+	761.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3117.0	NM_011104	18754.0	Mm.24614	NM_011104	ENSMUSG00000045038	Prkce	5830406C15Rik|PKC[e]|PKCepsilon|Pkce|R75156	protein kinase C, epsilon	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141635815-4	chr4	141635755	141635955	+	812.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347237, intron 6 of 18)	intron (NM_001347237, intron 6 of 18)	-12021.0	NM_001013780	384071.0	Mm.295682	NM_001013780	ENSMUSG00000040740	Slc25a34	Gm1369	solute carrier family 25, member 34	protein-coding	0.371806997997341	0.00655704179779371	0.680910722674849	-0.00351970010759259	-0.00973834215671582	0.00783700404864485	0.589688922061311	-0.00275186847533468	-0.835603334056007	0.709141458395009	1
Merged-chr3-81102786-2	chr3	81102686	81102886	+	764.583374	f0_balb.idr|f1_c57bl6.idr	intron (NM_019971, intron 1 of 5)	intron (NM_019971, intron 1 of 5)	66370.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	2.59206442030181	3.00167077467675	2.70757001251619	2.73078450820345	3.11757850024532	1.84853857089653	2.83084116893692	1.95058458116569	-0.377684851345078	0.629553986991948	0.981201918729827
Merged-chr2-32236562-4	chr2	32236445	32236645	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145145)	promoter-TSS (NM_145145)	-138.0	NM_145145	99011.0	Mm.31192	NM_145145	ENSMUSG00000039254	Pomt1	AI505244	protein-O-mannosyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-55811840-4	chr4	55811746	55811946	+	837.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-279371.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-99342216-2	chr13	99342116	99342316	+	646.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026873, intron 2 of 9)	intron (NM_026873, intron 2 of 9)	2462.0	NM_026873	68927.0	Mm.276502	NM_026873	ENSMUSG00000021650	Ptcd2	1190005P08Rik	pentatricopeptide repeat domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-58310923-2	chr10	58310823	58311023	+	632.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	-12624.0	NM_001359115	110829.0	Mm.57734	NM_026148	ENSMUSG00000019920	Lims1	2310016J22Rik|4921524A02Rik|AI507642|AU021743|AW551584|C430041B13Rik|Lims1l|PINCH|PINCH1	LIM and senescent cell antigen-like domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-30509146-2	chr6	30509046	30509246	+	637.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027073)	promoter-TSS (NM_027073)	627.0	NM_001347087	72649.0	Mm.45418	NM_178625	ENSMUSG00000029782	Tmem209	2700094F01Rik|AI428435	transmembrane protein 209	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80032975-4	chr7	80032869	80033069	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175433, intron 1 of 4)	intron (NM_175433, intron 1 of 4)	6741.0	NM_175433	209225.0	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-108709677-4	chr6	108709545	108709745	+	789.43335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48711.0	NR_104577	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-24476525-2	chr5	24476425	24476625	+	618.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359881, intron 2 of 15)	intron (NM_001359881, intron 2 of 15)	24348.0	NM_139153	213990.0	Mm.250703	NM_139153	ENSMUSG00000023353	Agap3	AGAP-3|AV028425|Centg3|Crag|Crag.|MRIP-1|cnt-g3	ArfGAP with GTPase domain, ankyrin repeat and PH domain 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47792111-2	chr17	47792011	47792211	+	945.166626	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001161723, exon 9 of 9)	3' UTR (NM_001161723, exon 9 of 9)	6367.0	NM_011549	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5781582-2	chr19	5781482	5781682	+	543.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-10163.0	NR_155264	78891.0	Mm.276063	NM_023912	ENSMUSG00000024941	Scyl1	2810011O19Rik|C85140|Ntkl|mdf|mfd|p105	SCY1-like 1 (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-137997465-3	chr3	137997370	137997570	+	766.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER5|LTR|ERV1	-15921.0	NM_011932	26377.0	Mm.254835	NM_011932	ENSMUSG00000028159	Dapp1	Bam32	dual adaptor for phosphotyrosine and 3-phosphoinositides 1	protein-coding	1.49834082987106	1.38994339920301	3.14510413169575	2.5923469596214	2.02718307190713	2.97498724355202	2.58827125210518	2.39491737555336	0.310884427186332	0.738814649109877	0.998431161219273
Merged-chr15-22721104-2	chr15	22721004	22721204	+	647.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER21B|LTR|ERV1	-6120.0	NM_001165971	545091.0	Mm.475598	NM_001165971		Hnrnpa1l2-ps2	EG545091|Gm5803	heterogeneous nuclear ribonucleoprotein A1-like 2, pseudogene 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4182043-4	chr19	4181955	4182155	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6576.0	NM_134148	107239.0	Mm.482310	NM_134148	ENSMUSG00000075289	Carns1	AI790298|Atpgd1|mKIAA1394	carnosine synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-118727029-4	chr2	118726971	118727171	+	837.712524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177568, intron 1 of 31)	intron (NM_177568, intron 1 of 31)	1367.0	NM_177568	18796.0	Mm.215156	NM_177568	ENSMUSG00000040061	Plcb2	AI550384|B230205M18Rik|B230399N12	phospholipase C, beta 2	protein-coding	2.32502004647457	1.14260769500259	1.11861562935666	1.66868835318777	2.40991764266324	1.94253085670212	1.56339261957848	2.04762528819277	0.925573285176084	0.411931292704817	0.894597257730009
Merged-chr7-3295861-4	chr7	3295756	3295956	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001093766, intron 1 of 1)	intron (NM_001093766, intron 1 of 1)	2828.0	NM_001093766	50918.0	Mm.29874	NM_016969	ENSMUSG00000068566	Myadm	D7Wsu62e	myeloid-associated differentiation marker	protein-coding	6.0004143408681	6.22250931739167	5.86859900606903	5.88099665672726	5.91111448586226	5.59000838562799	5.42847395243109	6.10982760234977	-0.227860992204965	0.360105918648311	0.856327306866984
Merged-chr14-72604321-4	chr14	72604213	72604413	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207636, intron 3 of 25)	intron (NM_207636, intron 3 of 25)	105690.0	NM_207636	319448.0	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-13671360-4	chr16	13671253	13671453	+	851.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025653)	promoter-TSS (NM_025653)	-505.0	NM_025976	67118.0	Mm.223689	NM_025653	ENSMUSG00000022684	Bfar	3010001A07Rik|3110001I22Rik|AI666707|AW107665|Bar|Rnf47	bifunctional apoptosis regulator	protein-coding	1.3621718434809	2.01264676780619	1.01995377602202	2.35279225908041	1.52982268519826	1.54650775556209	1.02576484911245	2.63782477230754	0.127834548735355	0.914314823020196	0.998431161219273
Merged-chr5-137116233-4	chr5	137116144	137116344	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_201373)	promoter-TSS (NM_201373)	-37.0	NM_201373	384309.0	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-119488457-4	chr13	119488364	119488564	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027974)	promoter-TSS (NR_027974)	-80.0	NR_027974	67304.0	Mm.474382	NM_026084	ENSMUSG00000074635	3110070M22Rik	-	RIKEN cDNA 3110070M22 gene	ncRNA	4.45222895388063	4.34947241886187	5.89927985717555	4.58879823924669	4.93095045181864	4.90090994424964	5.89558605546332	5.18128805616953	0.355262190167674	0.385446413105091	0.876154616828737
Merged-chr3-58413895-2	chr3	58413795	58413995	+	856.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081229)	promoter-TSS (NM_001081229)	-825.0	NM_001081229	72033.0	Mm.218409	NM_001081229	ENSMUSG00000027806	Tsc22d2	1810043J12Rik|5530402M19Rik	TSC22 domain family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-127300914-2	chr2	127300814	127301014	+	611.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	30685.0	NM_139308	99138.0	Mm.41271	NM_139308	ENSMUSG00000027367	Stard7	AI852671|AL022671|AW544915	START domain containing 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-88216743-2	chr1	88216643	88216843	+	605.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_201642, intron 4 of 4)	B3A|SINE|B2	4784.0	NM_201645	394436.0	Mm.300095	NM_201645	ENSMUSG00000089960	Ugt1a1	Gnt1|UDPGT 1-1|UGT1A01|Udpgt-1a|UgtBr1	UDP glucuronosyltransferase 1 family, polypeptide A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-34637066-4	chr19	34636972	34637172	+	873.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053217, intron 1 of 2)	Lx5|LINE|L1	3671.0	NM_053217	112419.0	Mm.440727	NM_053217	ENSMUSG00000067297	Ifit1bl2	2010002M12Rik|AW412491|Ifit1b	interferon induced protein with tetratricopeptide repeats 1B like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150546922-3	chr4	150546824	150547024	+	880.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 11 of 22)	intron (NM_001085492, intron 11 of 22)	105250.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	2.18984935079646	2.31847746288474	1.68853748334396	2.63599746260388	3.02097694432592	2.33575602755864	1.91591929765027	3.22524520005178	1.01226261077337	0.227107943811751	0.71997232966636
Merged-chr16-10483817-2	chr16	10483717	10483917	+	681.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001243760, intron 1 of 18)	intron (NM_001243760, intron 1 of 18)	3745.0	NM_001302618	12265.0	Mm.249560	NM_007575	ENSMUSG00000022504	Ciita	C2ta|EG669998|Gm9475|Mhc2ta	class II transactivator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-47352479-3	chr14	47352382	47352582	+	871.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21378.0	NM_010705	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	1.28581444119273	1.77120078053715	0.957919917586919	2.43399461182012	0.915320749462433	1.91939491846348	1.71970411382071	1.36225215935194	-0.625743078975156	0.61234200318116	0.976329409858076
Merged-chr16-90386930-3	chr16	90386842	90387042	+	920.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015755, intron 1 of 10)	CpG	545.0	NM_015755	26559.0	Mm.125874	NM_015755	ENSMUSG00000053414	Hunk	Bstk1|Mak-v	hormonally upregulated Neu-associated kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-17762315-3	chr12	17762184	17762384	+	733.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016677, intron 1 of 3)	intron (NM_016677, intron 1 of 3)	71475.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-102015061-4	chr7	102014966	102015166	+	783.474976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_133947)	TTS (NM_133947)	3089.0	NM_010531	16068.0	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-73620897-3	chr13	73620808	73621008	+	764.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_146047)	TTS (NM_146047)	-6003.0	NM_001362387	21752.0	Mm.10109	NM_009354	ENSMUSG00000021611	Tert	EST2|TCS1|TP2|TR|TRT	telomerase reverse transcriptase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70850856-2	chr11	70850747	70850947	+	550.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291143, intron 2 of 18)	L2a|LINE|L2	6086.0	NM_001291142	54189.0	Mm.7087	NM_019400	ENSMUSG00000020817	Rabep1	Rab5ep|rabaptin-5|rabaptin-5alpha	rabaptin, RAB GTPase binding effector protein 1	protein-coding	-1.8418762459921	-1.8125357239735	-1.82140854000656	-1.82869693527674	-1.56059678980999	-1.8106129477253	-1.81939992894326	-1.82739231600805	1.3620893379502	0.699511506488145	1
Merged-chr1-178335269-1	chr1	178335169	178335369	+	623.5	f0_balb.idr	intron (NR_149827, intron 3 of 16)	intron (NR_149827, intron 3 of 16)	2546.0	NM_016805	51810.0	Mm.86589	NM_016805	ENSMUSG00000039630	Hnrnpu	AA408410|AI256620|AL024194|AL024437|AW557595|C86794|Hnrpu|SAFA|Sp120|hnRNP U	heterogeneous nuclear ribonucleoprotein U	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-50114552-4	chr11	50114450	50114650	+	946.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290750, intron 7 of 7)	B3|SINE|B2	-16810.0	NM_001290759	76795.0	Mm.290975	NM_029745	ENSMUSG00000036644	Tbc1d9b	-	TBC1 domain family, member 9B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-21786727-4	chr5	21786629	21786829	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011188, exon 2 of 13)	exon (NM_011188, exon 2 of 13)	1446.0	NM_011188	19181.0	Mm.2462	NM_011188	ENSMUSG00000028932	Psmc2	-	proteasome (prosome, macropain) 26S subunit, ATPase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-28424531-2	chr6	28424431	28424631	+	765.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007480, intron 2 of 5)	intron (NM_007480, intron 2 of 5)	927.0	NM_007480	11844.0	Mm.389075	NM_007480	ENSMUSG00000020440	Arf5	-	ADP-ribosylation factor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-181210696-4	chr1	181210617	181210817	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145514, intron 1 of 13)	intron (NM_145514, intron 1 of 13)	1261.0	NM_145514	226757.0	Mm.289082	NM_145514	ENSMUSG00000038733	Wdr26	1600024A01Rik|AA693241|AI447817|AU044014|C77982|Gid7	WD repeat domain 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71464802-4	chr8	71464712	71464912	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053162)	promoter-TSS (NM_053162)	-114.0	NM_053162	94065.0	Mm.29489	NM_053162	ENSMUSG00000034880	Mrpl34	0610007O17Rik|D8Bwg1484e	mitochondrial ribosomal protein L34	protein-coding	5.25106134562723	5.23188139666381	5.59262049558213	5.77437047367029	4.89095530187433	4.77599225102717	5.34868565583265	4.72824428030279	-0.611797269344778	0.0469190698563435	0.313525597648382
Merged-chr5-32869793-2	chr5	32869693	32869893	+	692.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025426, intron 5 of 42)	intron (NM_001025426, intron 5 of 42)	6072.0	NM_001170567	277854.0	Mm.101524	NM_177786	ENSMUSG00000037426	Depdc5	AV016528	DEP domain containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-7253451-2	chr9	7253351	7253551	+	642.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19063.0	NM_008607	17386.0	Mm.5022	NM_008607	ENSMUSG00000050578	Mmp13	Clg|MMP-13|Mmp1	matrix metallopeptidase 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-165667104-4	chr1	165666999	165667199	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038846, intron 1 of 5)	intron (NM_001038846, intron 1 of 5)	-32558.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135471924-4	chr5	135471828	135472028	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146001, intron 1 of 30)	intron (NM_146001, intron 1 of 30)	73194.0	NM_146001	215114.0	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115630510-2	chr5	115630410	115630610	+	584.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_027810)	TTS (NR_027810)	1306.0	NR_027810	66123.0	Mm.133063	NM_021417	ENSMUSG00000107121	1110006O24Rik	-	RIKEN cDNA 1110006O24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80114728-4	chr10	80114623	80114823	+	981.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 1 of 4)	intron (NR_038088, intron 1 of 4)	-1080.0	NM_001301853	20869.0	Mm.44231	NM_011492	ENSMUSG00000003068	Stk11	AA408040|Lkb1|Par-4|R75140	serine/threonine kinase 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43432925-2	chr4	43432825	43433025	+	699.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3791.0	NM_001162381	329831.0	Mm.454466	NM_177377	ENSMUSG00000042788	Fam166b	4833436C18Rik	family with sequence similarity 166, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-135198049-4	chr6	135197949	135198149	+	972.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028982)	promoter-TSS (NM_028982)	-51.0	NM_001362111	74525.0	Mm.34182	NM_028982	ENSMUSG00000030207	Fam234b	8430419L09Rik|mKIAA1467	family with sequence similarity 234, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-126612948-4	chr3	126612867	126613067	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025438, intron 2 of 18)	Lx5c|LINE|L1	16016.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	1.62352405467074	0.738484313963791	1.61411957250259	1.2230499008347	0.879103494439047	0.741564357753679	1.62978416881701	0.715717425388404	-1.10477703512333	0.455209878626761	0.919253057979521
Merged-chr14-70470424-3	chr14	70470340	70470540	+	781.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12923.0	NM_145981	105653.0	Mm.192598	NM_145981	ENSMUSG00000003469	Phyhip	AW049870|C630010D02Rik|Lnap1ip|PAHX-AP#1|PAHX-AP1	phytanoyl-CoA hydroxylase interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-48672045-1	chr9	48671945	48672145	+	949.0	f1_c57bl6.idr	intron (NM_001033324, intron 4 of 6)	intron (NM_001033324, intron 4 of 6)	-66922.0	NM_001311062	18113.0	Mm.8362	NM_010924	ENSMUSG00000032271	Nnmt	-	nicotinamide N-methyltransferase	protein-coding	2.58567183789936	3.81985103860537	1.29690729173116	3.58727233436869	1.41163043715994	1.02504320378234	0.976052399545739	0.931215617703548	-5.01436508200821	9.40793375385271e-05	0.0029693192866138
Merged-chr18-82717512-4	chr18	82717409	82717609	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2772.0	NR_039572	100628586.0		NR_039572	ENSMUSG00000092638	Mir5112	mmu-mir-5112|mu-mir-5112	microRNA 5112	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-128102759-4	chr1	128102646	128102846	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027678)	promoter-TSS (NM_027678)	255.0	NM_001357573	226409.0	Mm.425048	NM_027678	ENSMUSG00000036086	Zranb3	4933425L19Rik|AH2|AI316834|C730006D09	zinc finger, RAN-binding domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3773770-3	chr4	3773661	3773861	+	731.277771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 10 of 12)	L1Md_F3|LINE|L1	58797.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	0.792547998735868	0.424894180923617	1.10894040306973	0.41080188556554	0.995976798355297	0.42668032980366	1.01708122062704	0.411877640599726	0.146400379944983	0.935670214657228	1
Merged-chr4-132079764-4	chr4	132079635	132079835	+	912.6749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4422.0	NM_001128607	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101327447-4	chr15	101327340	101327540	+	978.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34228.0	NR_033803	77717.0	Mm.391998	NR_033803	ENSMUSG00000075408	6030408B16Rik	AI225877	RIKEN cDNA 6030408B16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-127497858-1	chr3	127497758	127497958	+	583.0	f1_balb.idr	intron (NM_001327938, intron 1 of 47)	intron (NM_001327938, intron 1 of 47)	1257.0	NM_001327938	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	1.70482269434899	0.688046802584013	1.55952344212183	0.664912407420331	0.650338639577595	0.690944914047566	1.35493369385312	1.30339825921532	-0.807556630029013	0.613923722005578	0.977250439470701
Merged-chr15-7931791-1	chr15	7931691	7931891	+	1000.0	f0_balb.idr	intron (NM_001081402, intron 10 of 17)	intron (NM_001081402, intron 10 of 17)	116241.0	NM_001301357	14573.0	Mm.4679	NM_010275	ENSMUSG00000022144	Gdnf	AI385739|ATF	glial cell line derived neurotrophic factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-20101547-2	chr10	20101447	20101647	+	687.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008580, intron 17 of 29)	Lx9|LINE|L1	-47373.0	NM_008635	17761.0	Mm.20928	NM_008635	ENSMUSG00000019996	Map7	E-MAP-115|MAP-7|Mtap7|R75000|mshi|mste|ste	microtubule-associated protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135868330-2	chr5	135868230	135868430	+	828.666687	f1_balb.idr|f1_c57bl6.idr	exon (NM_021403, exon 12 of 15)	exon (NM_021403, exon 12 of 15)	-19589.0	NM_013560	15507.0	Mm.13849	NM_013560	ENSMUSG00000004951	Hspb1	27kDa|Hsp25	heat shock protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-149187434-2	chr6	149187334	149187534	+	605.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113424, intron 1 of 6)	ID_B1|SINE|B4	1278.0	NM_001356344	232566.0	Mm.209147	NM_001113424	ENSMUSG00000068250	Amn1	5830467E07Rik|A230083D09|C730024G19Rik	antagonist of mitotic exit network 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-113621797-2	chr13	113621697	113621897	+	565.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	CYRA11_Mm|Unknown|Y-chromosome	-3233.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-9428135-2	chr13	9428035	9428235	+	967.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081426, intron 1 of 36)	intron (NM_001081426, intron 1 of 36)	151610.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-128884503-2	chr4	128884403	128884603	+	671.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_178110, exon 1 of 5)	exon (NM_178110, exon 1 of 5)	363.0	NM_178110	67525.0	Mm.30653	NM_178110	ENSMUSG00000041000	Trim62	6330414G21Rik|AI450348|Dear1	tripartite motif-containing 62	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-137648865-2	chr6	137648765	137648965	+	939.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007945, intron 1 of 21)	CpG	420.0	NM_001271588	13860.0	Mm.235346	NM_007945	ENSMUSG00000015766	Eps8	AW261790	epidermal growth factor receptor pathway substrate 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-54524118-2	chr11	54524018	54524218	+	784.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252494, intron 1 of 28)	intron (NM_001252494, intron 1 of 28)	1273.0	NM_001252496	192786.0	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-116104044-1	chr9	116103944	116104144	+	557.0	f1_balb.idr	intron (NM_029575, intron 5 of 6)	MTD|LTR|ERVL-MaLR	71319.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-104860152-3	chr5	104860039	104860239	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039231)	promoter-TSS (NM_001039231)	-71.0	NM_001039231	626391.0	Mm.385405	NM_001039231	ENSMUSG00000072774	Zfp951	C230055K05Rik|Gm38611	zinc finger protein 951	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5342484-2	chr17	5342384	5342584	+	648.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001085355, exon 20 of 20)	exon (NM_001085355, exon 20 of 20)	76283.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-88062156-1	chr17	88062056	88062256	+	566.0	f1_c57bl6.idr	intron (NM_001081034, intron 1 of 22)	intron (NM_001081034, intron 1 of 22)	2776.0	NM_001348248	225055.0	Mm.386857	NM_001081034	ENSMUSG00000005371	Fbxo11	C80048|Jf	F-box protein 11	protein-coding	-0.700064241511417	-0.186671140929496	-0.692852367725508	-0.695563882069579	-0.699394869705802	-0.177296101845517	-0.692077155152847	-0.695090216270211	0.0394491945098347	0.989215944639676	1
Merged-chr15-55356187-4	chr15	55356106	55356306	+	851.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181277, intron 5 of 47)	intron (NM_181277, intron 5 of 47)	48456.0	NM_181277	12818.0	Mm.297859	NM_181277	ENSMUSG00000022371	Col14a1	5730412L22Rik|AW108078	collagen, type XIV, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-58814665-4	chr2	58814571	58814771	+	980.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M8|LINE|L1	59487.0	NM_029692	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-130074066-4	chr7	130073959	130074159	+	826.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	111894.0	NR_046077	100043150.0	Mm.334264	NR_046077	ENSMUSG00000108504	Gm4265	-	predicted gene 4265	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-59764055-4	chr1	59763901	59764101	+	993.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007561)	promoter-TSS (NM_007561)	-278.0	NM_007561	12168.0	Mm.7106	NM_007561	ENSMUSG00000067336	Bmpr2	2610024H22Rik|AL117858|AW546137|BB189135|BMP-2|BMPR-2|BMPR-II|BMPRII|BRK-3|Gm20272	bone morphogenetic protein receptor, type II (serine/threonine kinase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-22616000-1	chr16	22615900	22616100	+	621.0	f0_balb.idr	intron (NM_001346673, intron 2 of 23)	MIRc|SINE|MIR	10674.0	NR_105781	102465962.0		NR_105781	ENSMUSG00000098448	Mir6362	Gm27812|mmu-mir-6362	microRNA 6362	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28013424-4	chr17	28013319	28013519	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181413, intron 12 of 24)	intron (NM_181413, intron 12 of 24)	67165.0	NM_001357681	21463.0	Mm.29758	NM_013687	ENSMUSG00000062859	Tcp11	D17Ken1|Tcp-11	t-complex protein 11	protein-coding	4.77742065842091	4.05000751191718	4.84122325871708	4.5546339464329	4.57396004432328	4.3023335439544	4.22868847625834	4.95638526216274	-0.0545319524034711	0.887812649976958	0.998431161219273
Merged-chr1-171283467-4	chr1	171283383	171283583	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013919, intron 8 of 12)	intron (NM_013919, intron 8 of 12)	-2297.0	NM_008911	19044.0	Mm.266888	NM_008911	ENSMUSG00000062729	Ppox	Ppo	protoporphyrinogen oxidase	protein-coding	0.996690991049303	1.73891561744527	0.706796130694403	1.31318421509842	1.34709076129005	0.722392182514228	0.70962634877114	1.3212981613395	-0.735404541195804	0.620258939641261	0.978763712119577
Merged-chr11-116013352-2	chr11	116013252	116013452	+	611.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016905)	promoter-TSS (NM_016905)	-633.0	NM_016905	14635.0	Mm.2820	NM_016905	ENSMUSG00000020766	Galk1	AA409894|GALK|Gk|Glk|Glk1	galactokinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-24445238-4	chr5	24445116	24445316	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023229)	promoter-TSS (NM_023229)	19.0	NM_023229	66587.0	Mm.28123	NM_023229	ENSMUSG00000028959	Fastk	0610011K02Rik|610011K02Rik	Fas-activated serine/threonine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-151345257-4	chr1	151345155	151345355	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039511, intron 1 of 7)	CpG	757.0	NM_001039511	117198.0	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-66125601-4	chr7	66125525	66125725	+	995.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081163, exon 2 of 3)	exon (NM_001081163, exon 2 of 3)	16110.0	NM_001081163	269941.0	Mm.333916	NM_001081163	ENSMUSG00000032640	Chsy1	mKIAA0990	chondroitin sulfate synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-3614162-3	chr7	3614070	3614270	+	688.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175632, intron 2 of 4)	intron (NM_175632, intron 2 of 4)	1987.0	NM_175632	232790.0	Mm.358882	NM_175632	ENSMUSG00000054594	Oscar	mOSCAR|mOSCAR-M1|mOSCAR-M2|mOSCAR-M3	osteoclast associated receptor	protein-coding	2.02020409938369	2.43103342130734	2.4890106186267	3.14915886816832	2.0369147664772	2.725136285055	3.11458216235223	3.09519556284583	0.422631391782418	0.583427061851293	0.966599221005409
Merged-chr10-19169080-2	chr10	19168983	19169183	+	887.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_038022, intron 1 of 1)	intron (NR_038022, intron 1 of 1)	1845.0	NR_038022	100504265.0	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-19968906-4	chr14	19968805	19969005	+	986.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285908, intron 1 of 3)	B1F|SINE|Alu	7788.0	NM_001285911	14702.0	Mm.41737	NM_010315	ENSMUSG00000043004	Gng2	-	guanine nucleotide binding protein (G protein), gamma 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70001257-2	chr11	70001157	70001357	+	564.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007888, intron 1 of 14)	intron (NM_007888, intron 1 of 14)	631.0	NM_007888	13543.0	Mm.5114	NM_007888	ENSMUSG00000020888	Dvl2	-	dishevelled segment polarity protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-86893901-4	chr12	86893807	86894007	+	955.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9093.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-36921844-3	chr19	36921745	36921945	+	850.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2246.0	NM_028263	72514.0	Mm.41674	NM_028263	ENSMUSG00000047632	Fgfbp3	2610306H15Rik|Fgf-bp3	fibroblast growth factor binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-104028268-2	chr2	104028168	104028368	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175161)	promoter-TSS (NM_175161)	93.0	NM_175161	70986.0	Mm.460738	NM_175161		4931422A03Rik	-	RIKEN cDNA 4931422A03 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-113690051-2	chr6	113689951	113690151	+	615.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 10 of 11)	intron (NM_001113553, intron 10 of 11)	-6999.0	NM_001347356	381801.0	Mm.333322	NM_001033463	ENSMUSG00000056952	Tatdn2	AI646012|mKIAA0218	TatD DNase domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-9433046-3	chr11	9432949	9433149	+	667.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178259, intron 37 of 61)	intron (NM_178259, intron 37 of 61)	241107.0	NM_178259	268379.0	Mm.39270	NM_178259	ENSMUSG00000004668	Abca13	9830132L24|A930002G16Rik|AI956815	ATP-binding cassette, sub-family A (ABC1), member 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-114842727-2	chr6	114842627	114842827	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253718, intron 19 of 19)	intron (NM_001253718, intron 19 of 19)	79094.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-121582658-2	chr10	121582467	121582667	+	919.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019786, intron 2 of 20)	B3A|SINE|B2	4227.0	NM_019786	56480.0	Mm.34580	NM_019786	ENSMUSG00000020115	Tbk1	1200008B05Rik|AI462036|AW048562	TANK-binding kinase 1	protein-coding	0.164756333583398	1.20117731006993	0.182501344177196	0.175885251415218	0.608248504676778	0.192882605184196	0.184381107357681	0.898242140158509	-0.148969197201511	0.941763069018374	1
Merged-chr9-96537041-4	chr9	96536942	96537142	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-58367.0	NM_001311135	19823.0	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-157518410-4	chr1	157518303	157518503	+	760.724976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033354, intron 2 of 27)	intron (NM_033354, intron 2 of 27)	-6680.0	NR_151610	102632813.0	Mm.420137	NR_151610		Gm15486	-	predicted gene 15486	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-52432354-2	chr5	52432254	52432454	+	747.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001256059, intron 3 of 11)	intron (NM_001256059, intron 3 of 11)	-8805.0	NR_152197	100041805.0	Mm.417070	NR_152197		Gm3519	Gm43683	predicted gene 3519	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-75831547-2	chr10	75831447	75831647	+	835.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_010361)	TTS (NM_010361)	3334.0	NM_010361	14872.0	Mm.24118	NM_010361	ENSMUSG00000033318	Gstt2	AI266894|Yrs|mGSTT2	glutathione S-transferase, theta 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-143022637-2	chr7	143022489	143022689	+	802.166626	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_110354, exon 5 of 5)	non-coding (NR_110354, exon 5 of 5)	16930.0	NM_001128081	27027.0	Mm.28172	NM_020286	ENSMUSG00000000244	Tspan32	AW208513|Art-1|BB235973|D7Wsu37e|Phemx|Tssc6	tetraspanin 32	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-6493185-1	chr17	6493085	6493285	+	714.0	f1_balb.idr	Intergenic	Intergenic	-42191.0	NR_033520	547127.0	Mm.297552	NM_001045538		Tmem181b-ps	Tmem181b	transmembrane protein 181B, pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-76380341-1	chr18	76380241	76380441	+	634.333313	f1_c57bl6.idr	Intergenic	Intergenic	117896.0	NM_001311070	17126.0	Mm.152699	NM_010754	ENSMUSG00000024563	Smad2	7120426M23Rik|Madh2|Madr2|Smad-2|mMad2	SMAD family member 2	protein-coding	2.04434003917017	2.51705021726936	2.21356832713454	2.26312210121838	1.94375494890098	2.53570735386181	2.23073134004428	1.31271613482654	-0.450438966877635	0.628106458020452	0.980912176761026
Merged-chr5-139466567-3	chr5	139466456	139466656	+	742.944458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-6022.0	NM_028469	73212.0	Mm.84294	NM_028469	ENSMUSG00000053553	3110082I17Rik	AW411904	RIKEN cDNA 3110082I17 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122775577-2	chr8	122775477	122775677	+	595.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144932)	promoter-TSS (NM_144932)	91.0	NM_144932	257633.0	Mm.334875	NM_144932	ENSMUSG00000015016	Acsf3	BB101783	acyl-CoA synthetase family member 3	protein-coding	1.7493815669419	1.98098433502989	1.21931475156541	1.50828999261769	0.967406158771591	1.76051139779038	1.22688724987448	1.86063589499893	-0.437221953516999	0.713039223863925	0.998431161219273
Merged-chr6-114297824-4	chr6	114297708	114297908	+	740.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178703, intron 1 of 15)	intron (NM_178703, intron 1 of 15)	15173.0	NM_178703	232333.0	Mm.5260	NM_178703	ENSMUSG00000030310	Slc6a1	A730043E01|GABATHG|GABATR|GAT-1|Gabt|Gabt1|Gat1|XT-1|Xtrp1	solute carrier family 6 (neurotransmitter transporter, GABA), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-25579121-4	chr17	25579039	25579239	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029624)	promoter-TSS (NM_029624)	-35.0	NM_029624	76483.0	Mm.12787	NM_029624	ENSMUSG00000002279	Lmf1	2400010G15Rik|AW822050|Tmem112|cld	lipase maturation factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-5309531-4	chr9	5309412	5309612	+	946.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007609, intron 1 of 8)	intron (NM_007609, intron 1 of 8)	663.0	NM_007609	12363.0	Mm.1569	NM_007609	ENSMUSG00000033538	Casp4	CASP-11|CASP-4|Casp11|Caspl|ich-3	caspase 4, apoptosis-related cysteine peptidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-25177198-2	chr2	25177098	25177298	+	978.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3560.0	NM_025980	67122.0	Mm.46539	NM_025980	ENSMUSG00000078202	Nrarp	2700054M22Rik	Notch-regulated ankyrin repeat protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-7529224-2	chr19	7529124	7529324	+	662.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163505, intron 9 of 12)	intron (NM_001163505, intron 9 of 12)	-28235.0	NM_139269	225845.0	Mm.274810	NM_139269	ENSMUSG00000060675	Pla2g16	AdPLA|C78643|HRSL3|Hrasls3|Hrev107|MLP-3	phospholipase A2, group XVI	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-109500090-2	chr12	109499990	109500190	+	872.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40906.0	NR_027652	17263.0	Mm.289645	NM_144513	ENSMUSG00000021268	Meg3	2900016C05Rik|3110050O07Rik|6330408G06Rik|AI425946|AW108224|D12Bwg1266e|Gtl2|R74756|R75394	maternally expressed 3	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-13675807-3	chr8	13675772	13675972	+	903.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 1 of 23)	intron (NM_009025, intron 1 of 23)	1715.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27504668-3	chr2	27504553	27504753	+	940.422241	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10494.0	NM_080848	140858.0	Mm.28265	NM_080848	ENSMUSG00000026917	Wdr5	2410008O07Rik|AA408785|AA960360|Big|Big-3	WD repeat domain 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-45181916-4	chr9	45181821	45182021	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145403, intron 5 of 12)	intron (NM_145403, intron 5 of 12)	-13845.0	NM_001198971	408059.0	Mm.249297	NM_001198971	ENSMUSG00000091996	BC049352	SMIM35	cDNA sequence BC049352	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-66114116-4	chr9	66114007	66114207	+	855.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019727, intron 1 of 14)	intron (NM_019727, intron 1 of 14)	10779.0	NM_019727	56440.0	Mm.271891	NM_019727	ENSMUSG00000032382	Snx1	-	sorting nexin 1	protein-coding	1.44131692759399	0.882296809313347	1.44120457115837	1.64616262956669	2.229696087873	1.65663963675561	0.868222193272793	0.852376098752184	0.557033928548326	0.682523208152784	0.995882295196263
Merged-chr1-155863089-3	chr1	155862947	155863147	+	720.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001039184, exon 34 of 38)	exon (NM_001039184, exon 34 of 38)	-50148.0	NM_001024945	104009.0	Mm.27035	NM_023268	ENSMUSG00000033684	Qsox1	1300003H02Rik|QSOX|Qscn6|SOx|b2b2673Clo	quiescin Q6 sulfhydryl oxidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45009071-2	chr7	45008971	45009171	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001008422, intron 6 of 10)	intron (NM_001008422, intron 6 of 10)	3416.0	NR_106021	102466218.0		NR_106021	ENSMUSG00000098839	Mir7054	Gm27557|mmu-mir-7054	microRNA 7054	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167415968-2	chr2	167415868	167416068	+	726.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5742.0	NM_148929	77031.0	Mm.278924	NM_148929	ENSMUSG00000039463	Slc9a8	1200006P13Rik|6430709P13Rik|AI182282|NHE-8|NHE8	solute carrier family 9 (sodium/hydrogen exchanger), member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-110967847-4	chr11	110967743	110967943	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252207)	promoter-TSS (NM_001252207)	-190.0	NM_010604	16517.0	Mm.30176	NM_010604	ENSMUSG00000051497	Kcnj16	6430410F18Rik|AI132396|Kir5.1	potassium inwardly-rectifying channel, subfamily J, member 16	protein-coding	3.72527894092838	4.02841090495969	3.69212918593459	3.51336299565956	4.21663874800224	3.38404020343843	2.73857736282175	3.93462825241171	-0.0750846508429143	0.889075588534601	0.998431161219273
Merged-chr16-30155208-3	chr16	30155103	30155303	+	999.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	89846.0	NM_008235	15205.0	Mm.390859	NM_008235	ENSMUSG00000022528	Hes1	Hry|bHLHb39	hes family bHLH transcription factor 1	protein-coding	2.97965581745834	2.49297390253075	4.10603483756542	3.40090853266141	0.949654349487763	1.12730291515628	1.07423888335619	1.02562283640723	-6.59205987798811	6.11900142388468e-08	5.76563710081951e-06
Merged-chr15-76817435-2	chr15	76817335	76817535	+	997.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198420, intron 1 of 10)	CpG	735.0	NM_001168288	223666.0	Mm.322931	NM_198420	ENSMUSG00000033697	Arhgap39	9530053N22|AI843066|D15Wsu169e|Kiaa1688|Porf-2	Rho GTPase activating protein 39	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-37406574-3	chr9	37406484	37406684	+	730.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001309390, intron 10 of 17)	intron (NM_001309390, intron 10 of 17)	4687.0	NM_001309390	74144.0	Mm.485070	NM_028783	ENSMUSG00000032125	Robo4	1200012D01Rik|AI593217	roundabout guidance receptor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-60444875-1	chr14	60444775	60444975	+	861.0	f1_balb.idr	Intergenic	RLTR40|LTR|ERVK	66589.0	NM_001164705	72125.0	Mm.275499	NM_028113	ENSMUSG00000021986	Amer2	2600011E07Rik|Fam123a	APC membrane recruitment 2	protein-coding	1.15127462579909	0.698707634665588	0.681935538257978	2.1289412516619	1.50095313881103	0.702423266399502	0.685676495870566	1.59893301266406	-0.447331955022185	0.771927058913019	0.998431161219273
Merged-chr1-191480107-1	chr1	191480007	191480207	+	783.0	f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	-15059.0	NR_151615	102634668.0		NR_151615		Gm32200	-	predicted gene, 32200	ncRNA	1.86333068329562	2.21665442758982	1.15766293553424	2.49683338303601	1.4878674323273	1.98212975781403	1.40462599671066	2.08666023719998	-0.69315828591222	0.514789703231389	0.947017304411256
Merged-chr11-75073132-4	chr11	75073003	75073203	+	908.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001002764, intron 13 of 18)	RSINE1|SINE|B4	-7112.0	NR_030454	735274.0		NR_030454	ENSMUSG00000106252	Mir684-1	Mirn684-1	microRNA 684-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-104574277-3	chr2	104574178	104574378	+	822.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	14819.0	NR_040323	74959.0	Mm.417819	NR_040322	ENSMUSG00000086454	Platr14	4930500J02Rik	pluripotency associated transcript 14	ncRNA	-1.20406370813143	-1.56956373024278	-1.57884638916872	-1.58647144159385	-1.598104728449	-1.56755213932999	-1.57674499865798	-1.58510656085539	-1.70745470802464	0.626337835847419	1
Merged-chr2-37703420-4	chr2	37703331	37703531	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-15147.0	NR_039590	100628597.0		NR_039590	ENSMUSG00000092958	Mir5128	mir-5128|mmu-mir-5128|mu-mir-5128	microRNA 5128	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-73933846-2	chr16	73933746	73933946	+	700.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001358492, exon 21 of 27)	exon (NM_001358492, exon 21 of 27)	408221.0	NR_030464	751561.0		NR_030464	ENSMUSG00000104758	Mir691	Mirn691|mir-691|mmu-mir-691	microRNA 691	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5463972-2	chr19	5463872	5464072	+	844.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021438, intron 7 of 9)	intron (NM_021438, intron 7 of 9)	3365.0	NM_021438	58249.0	Mm.329656	NM_021438	ENSMUSG00000024911	Fibp	2010004G08Rik|2010005N21Rik|3010027N18Rik	fibroblast growth factor (acidic) intracellular binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-35937422-2	chr15	35937322	35937522	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_053071, intron 1 of 3)	intron (NM_053071, intron 1 of 3)	824.0	NM_053071	12864.0	Mm.548	NM_053071	ENSMUSG00000014313	Cox6c	-	cytochrome c oxidase subunit VIc	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-120634420-1	chr7	120634320	120634520	+	548.0	f0_balb.idr	promoter-TSS (NM_025899)	promoter-TSS (NM_025899)	-769.0	NM_025899	67003.0	Mm.334206	NM_025899	ENSMUSG00000030884	Uqcrc2	1500004O06Rik	ubiquinol cytochrome c reductase core protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44305304-4	chr7	44305198	44305398	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009131, intron 3 of 3)	intron (NM_009131, intron 3 of 3)	1661.0	NM_009131	20256.0	Mm.20428	NM_009131	ENSMUSG00000004473	Clec11a	AW457320|Clecsf3|Scgf	C-type lectin domain family 11, member a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-149141522-4	chr6	149141439	149141639	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177101)	promoter-TSS (NM_177101)	26.0	NM_001252095	320204.0	Mm.274099	NM_177101	ENSMUSG00000039958	Etfbkmt	4833442J19Rik|AI256744|ETFB-KMT|Mettl20	electron transfer flavoprotein beta subunit lysine methyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-56912897-3	chr10	56912796	56912996	+	983.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	480915.0	NR_152768	102640560.0	Mm.417249	NR_152768		Gm36595	-	predicted gene, 36595	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-103016109-4	chr14	103016007	103016207	+	995.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045657, intron 2 of 2)	intron (NR_045657, intron 2 of 2)	17696.0	NR_045657	71264.0	Mm.399572	NR_045657	ENSMUSG00000114980	4933432I03Rik	-	RIKEN cDNA 4933432I03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-105034168-4	chr9	105034066	105034266	+	993.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001357439, exon 16 of 16)	3' UTR (NM_001357439, exon 16 of 16)	-19102.0	NM_053159	94062.0	Mm.29746	NM_053159	ENSMUSG00000032563	Mrpl3	2010320L16Rik|5930422H18Rik|AA407889	mitochondrial ribosomal protein L3	protein-coding	3.36820005079231	4.45261110060729	4.31069755520473	3.47307797488372	4.39452989906237	5.1374872900177	3.70559489501281	5.07492774914089	0.923847847209511	0.0529938310359885	0.336825252383624
Merged-chr7-114509042-3	chr7	114508946	114509146	+	952.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011055, intron 7 of 15)	intron (NM_011055, intron 7 of 15)	53926.0	NR_110407	244209.0	Mm.108037	NM_177382	ENSMUSG00000030670	Cyp2r1	-	cytochrome P450, family 2, subfamily r, polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-102450153-2	chr15	102450053	102450253	+	908.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356575, intron 7 of 11)	B1_Mm|SINE|Alu	4786.0	NM_144547	110542.0	Mm.60331	NM_144547	ENSMUSG00000023047	Amhr2	Misiir|Misrii|Mrii	anti-Mullerian hormone type 2 receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-64869566-2	chr2	64869466	64869666	+	647.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3C|LINE|L1	153200.0	NM_016719	50915.0	Mm.214554	NM_016719	ENSMUSG00000026888	Grb14	AI505286	growth factor receptor bound protein 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-95676603-2	chr10	95676503	95676703	+	570.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-112457.0	NM_001358996	71207.0	Mm.24397	NM_027722	ENSMUSG00000020029	Nudt4	4933436C10Rik|DIPP-2|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P	nudix (nucleoside diphosphate linked moiety X)-type motif 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-164443223-4	chr2	164443105	164443305	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011521)	promoter-TSS (NM_011521)	-17.0	NM_011521	20971.0	Mm.3815	NM_011521	ENSMUSG00000017009	Sdc4	AA959608|AW108331|S4|Synd4|ryudocan|syndecan-4	syndecan 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-76377335-4	chr12	76377230	76377430	+	932.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178744, intron 1 of 1)	intron (NM_178744, intron 1 of 1)	7064.0	NM_178744	268564.0	Mm.77065	NM_178744	ENSMUSG00000033454	Zbtb1	9430077A12|AI256369|Bsg2|C430003J21Rik	zinc finger and BTB domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-57801540-4	chr11	57801439	57801639	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_131042)	promoter-TSS (NR_131042)	-72.0	NR_131042	76516.0	Mm.28485	NR_131042	ENSMUSG00000087165	2010001A14Rik	-	RIKEN cDNA 2010001A14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-77841670-2	chr14	77841571	77841771	+	668.875	f0_c57.idr|f1_c57bl6.idr	intron (NM_025384, intron 4 of 5)	intron (NM_025384, intron 4 of 5)	33246.0	NM_025384	66148.0	Mm.248046	NM_025384	ENSMUSG00000022013	Dnajc15	1110003P16Rik|Dnajd1	DnaJ heat shock protein family (Hsp40) member C15	protein-coding	2.6828130665834	3.18759947319857	1.97102474666994	3.53361375097825	2.11026856879869	2.06525994211205	1.25588646171337	1.21621178435151	-2.65152149193512	0.00492438451870635	0.0661374240172823
Merged-chr8-125845452-4	chr8	125845344	125845544	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175561, intron 15 of 33)	intron (NM_175561, intron 15 of 33)	-52470.0	NR_155422	102632990.0	Mm.429446	NR_155422		A730098A19Rik	-	RIKEN cDNA A730098A19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-29708255-4	chr19	29708166	29708366	+	931.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_029993)	TTS (NM_029993)	10325.0	NM_029993	77836.0	Mm.138437	NM_029993	ENSMUSG00000024806	Mlana	A930034P04Rik|Mart1	melan-A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-61812004-4	chr2	61811887	61812087	+	902.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009322, exon 6 of 6)	exon (NM_009322, exon 6 of 6)	7534.0	NM_009322	21375.0	Mm.308525	NM_009322	ENSMUSG00000035033	Tbr1	-	T-box brain gene 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107545797-3	chr9	107545699	107545899	+	835.611145	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_018879)	TTS (NM_018879)	-1511.0	NM_053253	114602.0	Mm.28331	NM_053253	ENSMUSG00000010044	Zmynd10	Blu	zinc finger, MYND domain containing 10	protein-coding	2.74505958516148	3.34726510815091	3.62053432836798	2.89725179345283	3.00948060492341	1.5743752176121	2.68110023402683	1.97098229886169	-1.37347253459636	0.0738820125748983	0.410891375174802
Merged-chr16-87714357-2	chr16	87714257	87714457	+	619.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007520, intron 1 of 4)	intron (NM_007520, intron 1 of 4)	15403.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-25366907-4	chr10	25366807	25367007	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358754, intron 1 of 16)	intron (NM_001358754, intron 1 of 16)	7109.0	NM_001358751	13822.0	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-74029209-4	chr13	74029119	74029319	+	781.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_182839, intron 2 of 3)	intron (NM_182839, intron 2 of 3)	19800.0	NM_182839	72948.0	Mm.39752	NM_182839	ENSMUSG00000021573	Tppp	2900041A09Rik|AI849835	tubulin polymerization promoting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-37279047-4	chr12	37278954	37279154	+	927.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178767, intron 3 of 12)	intron (NM_178767, intron 3 of 12)	37415.0	NM_178767	319660.0	Mm.485540	NM_178767	ENSMUSG00000050103	Agmo	A530016O06Rik|AI790538|Tmem195	alkylglycerol monooxygenase	protein-coding	3.27722956258713	3.87385792432151	3.75098068583026	3.37632893018661	2.98118387191181	3.6934839689375	2.76614594553175	2.3614123321997	-0.883387335981156	0.145191734995591	0.595355583211584
Merged-chr9-21022033-4	chr9	21021919	21022119	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010493, intron 2 of 6)	intron (NM_010493, intron 2 of 6)	6079.0	NM_010493	15894.0	Mm.435508	NM_010493	ENSMUSG00000037405	Icam1	CD54|Icam-1|Ly-47|MALA-2	intercellular adhesion molecule 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-58402393-7	chr13	58402289	58402489	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001301343)	promoter-TSS (NM_001301343)	123.0	NR_153504	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-75513375-4	chr10	75513279	75513479	+	947.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347201, intron 1 of 5)	intron (NM_001347201, intron 1 of 5)	4002.0	NM_175133	68778.0	Mm.29382	NM_175133	ENSMUSG00000033416	Gucd1	1110038D17Rik	guanylyl cyclase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-18620022-4	chr19	18619900	18620100	+	769.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017375, intron 1 of 9)	intron (NM_017375, intron 1 of 9)	11813.0	NM_017375	20409.0	Mm.172222	NM_017375	ENSMUSG00000024725	Ostf1	C78236|SH3P2|Sh3d3	osteoclast stimulating factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-43515003-2	chr13	43514903	43515103	+	996.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-34030.0	NM_019930	56705.0	Mm.148781	NM_019930	ENSMUSG00000038546	Ranbp9	IBAP-1|Ibap1|RanBPM	RAN binding protein 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-77439267-2	chr11	77439167	77439367	+	589.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177710, intron 12 of 14)	intron (NM_177710, intron 12 of 14)	-24646.0	NM_139129	216961.0	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101566848-4	chr7	101566754	101566954	+	816.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14-int|LTR|ERV1	-5989.0	NR_033804	11871.0	Mm.439746	NM_007490	ENSMUSG00000092517	Art2a-ps	ARTC2|Art2a|Ly92a|Rt-6|Rt6|Rt6-1	ADP-ribosyltransferase 2a, pseudogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100646408-1	chr11	100646308	100646508	+	1000.0	f1_balb.idr	intron (NM_177790, intron 1 of 7)	intron (NM_177790, intron 1 of 7)	4285.0	NM_177790	278304.0	Mm.274734	NM_177790	ENSMUSG00000014198	Zfp385c	A930006D11Rik|Znf385c	zinc finger protein 385C	protein-coding	1.19892105230488	0.881179685907838	2.31125855878029	1.696638341368	0.817163588347779	0.885939453138817	2.17561973445982	1.43998410658979	-0.508478387612015	0.705716861115788	0.998431161219273
Merged-chr13-113586346-2	chr13	113586246	113586446	+	835.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32218.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-83488811-2	chr9	83488711	83488911	+	771.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47684.0	NM_029434	75782.0	Mm.199698	NM_027448	ENSMUSG00000032258	Lca5	4930431B11Rik|5730406O13Rik|AV274874|ORF64	Leber congenital amaurosis 5 (human)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71301510-4	chr17	71301416	71301616	+	956.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357337, intron 2 of 7)	intron (NM_001357337, intron 2 of 7)	9495.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-108503837-4	chr6	108503720	108503920	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 53 of 61)	L1ME1|LINE|L1	14077.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106499109-5	chr11	106498960	106499160	+	866.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F|LTR|ERVL-MaLR	-1931.0	NR_030703	100216537.0		NR_030703	ENSMUSG00000065126	Snord104	-	small nucleolar RNA, C/D box 104	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-6548140-4	chr13	6548054	6548254	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145131)	promoter-TSS (NM_145131)	-3.0	NM_145131	69617.0	Mm.41933	NM_145131	ENSMUSG00000021193	Pitrm1	2310012C15Rik|AA410010|MP-1|MP1|Ntup1|PreP|mKIAA1104	pitrilysin metallepetidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19506529-4	chr7	19506406	19506606	+	914.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177692, exon 2 of 2)	3' UTR (NM_177692, exon 2 of 2)	1825.0	NM_177692	232946.0	Mm.64557	NM_177692	ENSMUSG00000057667	Bloc1s3	BC043666|Blos3|E230011O18|rp	biogenesis of lysosomal organelles complex-1, subunit 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-86745758-4	chr11	86745654	86745854	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003908, intron 1 of 31)	intron (NM_001003908, intron 1 of 31)	11813.0	NM_001003908	67300.0	Mm.254588	NM_001003908	ENSMUSG00000047126	Cltc	3110065L21Rik|CHC|R74732	clathrin, heavy polypeptide (Hc)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-16323165-4	chr19	16323056	16323256	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008139, intron 3 of 6)	intron (NM_008139, intron 3 of 6)	-8152.0	NR_105832	102465218.0		NR_105832	ENSMUSG00000098718	Mir496b	Gm28028|mmu-mir-496b	microRNA 496b	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-95955673-4	chr13	95955574	95955774	+	983.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER63B|DNA|hAT-Blackjack	-63752.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	0.970612612129325	1.086813388375	2.07430959389884	1.02206148097233	1.61880882063469	2.73212969165254	2.33993963126597	3.11911478870996	2.99211097562572	0.00834297119369549	0.0955878060911696
Merged-chr6-30205809-4	chr6	30205707	30205907	+	936.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	29184.0	NR_038124	100463519.0	Mm.361139	NR_038124		BB283400	BF465573|Rncr4	expressed sequence BB283400	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-134123392-2	chr4	134123292	134123492	+	658.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045571, exon 9 of 14)	non-coding (NR_045571, exon 9 of 14)	5361.0	NM_080559	73723.0	Mm.22240	NM_080559	ENSMUSG00000028843	Sh3bgrl3	1110004L05Rik|AU022188	SH3 domain binding glutamic acid-rich protein-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135611896-1	chr5	135611796	135611996	+	557.0	f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	-20758.0	NM_001357037	215160.0	Mm.295438	NM_031398	ENSMUSG00000039917	Rhbdd2	0610011L13Rik|AI480532|Rhbdl7|Usmg1	rhomboid domain containing 2	protein-coding	-0.726855929095442	-0.716140374131867	-0.0327458267845109	-0.722358520060053	-0.726186830842313	-0.715349394148909	-0.718875870043228	-0.404678335617085	-1.35355377121926	0.644916810396768	1
Merged-chr7-104446146-4	chr7	104446049	104446249	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357467)	promoter-TSS (NM_001357467)	-24.0	NM_001357467	20128.0	Mm.295578	NM_009099	ENSMUSG00000030921	Trim30a	Rpt-1|Rpt1|Trim30	tripartite motif-containing 30A	protein-coding	4.5456888628219	4.78556653931128	3.98538826544354	5.24532183011048	4.46112317068281	5.29020050055227	3.06466360051683	5.15661265714002	0.01338645484971	0.977650611940371	0.998431161219273
Merged-chr19-32263006-2	chr19	32262906	32263106	+	577.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001168525, intron 2 of 9)	RLTR21|LTR|ERVK	-51993.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-8630028-4	chr11	8629943	8630143	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 1 of 30)	intron (NM_001083587, intron 1 of 30)	34492.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-34837431-2	chr12	34837331	34837531	+	663.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271386, intron 2 of 27)	intron (NM_001271386, intron 2 of 27)	79664.0	NM_001271386	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-121346732-4	chr14	121346619	121346819	+	905.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145465, intron 1 of 10)	intron (NM_145465, intron 1 of 10)	32511.0	NM_145465	223255.0	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46341007-4	chr8	46340854	46341054	+	905.366699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46283.0	NM_173789	234219.0	Mm.145631	NM_173789	ENSMUSG00000047171	Helt	A830086M02|Hesl|Heslike|Mgn|megane	helt bHLH transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-108999281-4	chr9	108999195	108999395	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153430, intron 3 of 13)	intron (NR_153430, intron 3 of 13)	7393.0	NR_153430	270198.0	Mm.132391	NM_173019	ENSMUSG00000025648	Pfkfb4	C230090D14	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-104271884-4	chr9	104271765	104271965	+	941.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8935.0	NM_001163026	235567.0	Mm.217256	NM_001163026	ENSMUSG00000032560	Dnajc13	D030002L11Rik|Gm1124|RME-8|Rme8|mKIAA0678	DnaJ heat shock protein family (Hsp40) member C13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-108043749-1	chr13	108043649	108043849	+	590.0	f0_balb.idr	promoter-TSS (NM_001048250)	promoter-TSS (NM_001048250)	-725.0	NM_001048250	75616.0	Mm.491164	NM_001048250	ENSMUSG00000071180	Smim15	2810008M24Rik	small integral membrane protein 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116624857-2	chr11	116624747	116624947	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001167680)	promoter-TSS (NM_001167680)	-595.0	NM_001167680	217344.0	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	2.35992072097762	2.52537871483248	1.46244261152668	2.8794090469431	2.13232778548774	3.08796704124913	2.58475356318522	3.24640636018268	0.840802335333288	0.308727602921571	0.809295017856989
Merged-chr8-70866749-4	chr8	70866756	70866956	+	666.875	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6634.0	NM_026964	234388.0	Mm.295791	NM_026964	ENSMUSG00000007721	Ccdc124	1810023B24Rik	coiled-coil domain containing 124	protein-coding	0.730553067303777	0.771440482176798	1.40924357604387	1.36314729181049	1.7203887183181	1.34389880818281	1.29314766673914	0.749789589077322	0.841551330154376	0.565533070915078	0.961812386813329
Merged-chr10-62311596-4	chr10	62311513	62311713	+	937.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010438, intron 5 of 21)	intron (NM_010438, intron 5 of 21)	28808.0	NM_001146100	15275.0	Mm.196605	NM_010438	ENSMUSG00000037012	Hk1	BB404130|Hk-1|Hk1-s|dea|mHk1-s	hexokinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-35538917-2	chr6	35538817	35539017	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008098, intron 1 of 3)	intron (NM_008098, intron 1 of 3)	971.0	NM_008098	14489.0	Mm.182746	NM_008098	ENSMUSG00000029840	Mtpn	5033418D15Rik|Gcdp|V1	myotrophin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-73817312-2	chr13	73817212	73817412	+	903.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_011390)	TTS (NM_011390)	30319.0	NM_028186	72293.0	Mm.45506	NM_028186	ENSMUSG00000021567	Nkd2	2210403L10Rik|AW212591|mNkd2	naked cuticle 2	protein-coding	-1.8429182434137	-1.8129848525291	-1.82203695700074	-1.54461076807193	-1.84081697472045	-1.81102322372834	-1.81998775896484	-1.82814164409203	-1.43114970378833	0.684630132144154	1
Merged-chr17-29009380-4	chr17	29009258	29009458	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1363.0	NM_001357173	106504.0	Mm.439986	NM_134115	ENSMUSG00000024006	Stk38	5830476G13Rik|9530097A09Rik|AA617404|Ndr1	serine/threonine kinase 38	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-65076829-2	chr12	65076729	65076929	+	836.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178912, intron 1 of 22)	B1F1|SINE|Alu	1223.0	NM_178912	104806.0	Mm.374847	NM_178912	ENSMUSG00000055884	Fancm	AI427100|C730036B14Rik|D12Ertd364e	Fanconi anemia, complementation group M	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-41350031-4	chr12	41349939	41350139	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053122, intron 4 of 6)	intron (NM_053122, intron 4 of 6)	136018.0	NM_001271708	16981.0	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-58480449-3	chr16	58480265	58480465	+	791.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357433, intron 6 of 10)	intron (NM_001357433, intron 6 of 10)	43061.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94098289-3	chr10	94098169	94098369	+	827.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053072, intron 5 of 20)	intron (NM_053072, intron 5 of 20)	-49662.0	NM_011629	22025.0	Mm.107483	NM_011629	ENSMUSG00000005897	Nr2c1	4831444H07Rik|80.3|Eenr|TR2|Tr2-11	nuclear receptor subfamily 2, group C, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107546281-1	chr9	107546181	107546381	+	932.0	f1_c57bl6.idr	TTS (NM_018879)	TTS (NM_018879)	-1029.0	NM_053253	114602.0	Mm.28331	NM_053253	ENSMUSG00000010044	Zmynd10	Blu	zinc finger, MYND domain containing 10	protein-coding	0.252117460321642	0.196376078802896	0.00145329709738984	0.701710269328956	-0.00825304950416605	0.00785064071070873	0.00260417391635373	0.42067280019912	-1.53171581869196	0.472411955569663	1
Merged-chr12-72085668-4	chr12	72085565	72085765	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001205067)	promoter-TSS (NM_001205067)	-174.0	NM_001205067	104771.0	Mm.258935	NM_024205	ENSMUSG00000005078	Jkamp	1200003C05Rik|2310047L11Rik|Jamp	JNK1/MAPK8-associated membrane protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125272262-3	chr6	125272152	125272352	+	754.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015527, intron 3 of 3)	intron (NR_015527, intron 3 of 3)	6727.0	NR_015527	73870.0	Mm.440681	NR_015527	ENSMUSG00000108129	4930417O13Rik	-	RIKEN cDNA 4930417O13 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-75089736-4	chr8	75089637	75089837	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3881.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	6.06854209092563	6.72722008066669	6.08111823805786	5.63752788994888	6.33994190202718	6.16129003277311	6.03802733888662	6.04444316269832	-0.025244280451866	0.92028950236566	0.998431161219273
Merged-chr13-37784420-3	chr13	37784324	37784524	+	681.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41614.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-190978727-2	chr1	190978627	190978827	+	743.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_144879, exon 1 of 8)	5' UTR (NM_144879, exon 1 of 8)	271.0	NM_144879	226841.0	Mm.22856	NM_144879	ENSMUSG00000037568	Vash2	B130052G07Rik	vasohibin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-114347170-4	chr7	114347065	114347265	+	884.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_029437, intron 1 of 3)	intron (NR_029437, intron 1 of 3)	67996.0	NR_029437	71045.0	Mm.235682	NR_029437	ENSMUSG00000087475	4933406I18Rik	4933403D24Rik	RIKEN cDNA 4933406I18 gene	ncRNA	2.45770907187583	1.43326855046201	3.4820262566756	2.0415811419919	1.94238236354809	3.43365463921341	3.38630433168132	2.0533347371657	0.540999901721617	0.544919573946794	0.956287659200869
Merged-chr1-64573385-3	chr1	64573289	64573489	+	824.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037726, intron 4 of 6)	intron (NM_001037726, intron 4 of 6)	40585.0	NM_001037726	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-75634014-3	chr12	75633915	75634115	+	657.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028203, intron 1 of 1)	RMER10B|LTR|ERVL	-2266.0	NR_038063	665931.0	Mm.341719	NR_038063		Rplp2-ps1	Gm7852	ribosomal protein, large P2, pseudogene 1	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-46795817-4	chr11	46795707	46795907	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14992.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-83859551-2	chr12	83859451	83859651	+	893.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_073564, intron 2 of 12)	ORR1A2-int|LTR|ERVL-MaLR	-17193.0	NM_010949	18222.0	Mm.4390	NM_010949	ENSMUSG00000021224	Numb	Nb	NUMB endocytic adaptor protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-94590871-2	chr15	94590771	94590971	+	666.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1047.0	NM_008971	19230.0	Mm.490250	NM_008971	ENSMUSG00000022451	Twf1	A6|Ptk9|twinfilin	twinfilin actin binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-40223978-4	chr12	40223879	40224079	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013562)	promoter-TSS (NM_013562)	615.0	NR_045157	629820.0	Mm.435540	NR_045157	ENSMUSG00000035983	Gm7008	EG629820	predicted gene 7008	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-40948754-2	chr3	40948654	40948854	+	803.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1877.0	NM_001040399	214048.0	Mm.46782	NM_027663	ENSMUSG00000025762	Larp1b	1700108L22Rik|4933421B21Rik|AA690246|Larp2	La ribonucleoprotein domain family, member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-79552984-3	chr14	79552881	79553081	+	857.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007920, intron 2 of 8)	L1_Mur2|LINE|L1	-34679.0	NM_026474	67955.0	Mm.18972	NM_026474	ENSMUSG00000022024	Sugt1	2410174K12Rik|SGT1	SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-119841614-2	chr8	119841514	119841714	+	971.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1035.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-37443755-2	chr19	37443654	37443854	+	765.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8913.0	NM_008245	15242.0	Mm.33896	NM_008245	ENSMUSG00000024986	Hhex	Hex|Hex1|Hhex-rs2|Prh|Prhx	hematopoietically expressed homeobox	protein-coding	1.0011876874571	0.619419054082434	1.33240132124382	0.601340555343799	1.01094655586329	1.01167302332986	1.443300120875	0.602725940489386	0.564158743348438	0.719173585387148	0.998431161219273
Merged-chr13-80968698-3	chr13	80968613	80968813	+	663.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015587, intron 1 of 1)	RLTR16|LTR|ERVK	4639.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-27550679-2	chr18	27550579	27550779	+	591.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1009485.0	NR_045398	320624.0	Mm.50107	NR_045398		4930474G06Rik	-	RIKEN cDNA 4930474G06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-27984585-4	chr3	27984502	27984702	+	967.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008875, intron 1 of 25)	intron (NM_008875, intron 1 of 25)	431.0	NM_008875	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83656906-2	chr11	83656806	83657006	+	977.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5678.0	NM_013652	20303.0	Mm.244263	NM_013652	ENSMUSG00000018930	Ccl4	AT744.1|Act-2|MIP-1B|Mip1b|Scya4	chemokine (C-C motif) ligand 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-114415932-6	chr7	114415882	114416082	+	834.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029437)	promoter-TSS (NR_029437)	728.0	NM_011055	18576.0	Mm.430730	NM_011055	ENSMUSG00000030671	Pde3b	9830102A01Rik|AI847709	phosphodiesterase 3B, cGMP-inhibited	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-84058792-3	chr6	84058696	84058896	+	893.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077694, intron 4 of 54)	intron (NM_001077694, intron 4 of 54)	39410.0	NM_021469	26903.0	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-112677663-2	chr12	112677563	112677763	+	595.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1177.0	NM_001100460	382639.0	Mm.11350	NM_001100460	ENSMUSG00000037638	Zbtb42	EG382639|Gm5188|simiRP58	zinc finger and BTB domain containing 42	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-52688915-2	chr12	52688826	52689026	+	688.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10457.0	NM_198111	238161.0	Mm.310822	NM_198111	ENSMUSG00000061603	Akap6	AI482140|Akapalpha|Akapbeta|PRKA	A kinase (PRKA) anchor protein 6	protein-coding	-2.18292257394068	-2.15545247547656	-2.03304972317742	-2.17058342868585	-2.18099422382073	-2.1536522739386	-2.16187909550322	-2.16936197735154	-0.683654500252594	0.846597994014493	1
Merged-chr17-3084821-4	chr17	3084733	3084933	+	955.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_003519)	promoter-TSS (NR_003519)	-650.0	NR_003519	328734.0	Mm.335641	NR_003519		Pisd-ps2	D030013I16Rik	phosphatidylserine decarboxylase, pseudogene 2	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-72361154-2	chr12	72361054	72361254	+	722.900024	f1_balb.idr|f1_c57bl6.idr	intron (NM_153457, intron 1 of 8)	intron (NM_153457, intron 1 of 8)	47900.0	NM_001286448	104001.0	Mm.221275	NM_153457	ENSMUSG00000021087	Rtn1	Nsp	reticulon 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-92581168-2	chr13	92581068	92581268	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4936.0	NM_030237	79401.0	Mm.23520	NM_030237	ENSMUSG00000046957	Spz1	1700027M20Rik|AI429130	spermatogenic leucine zipper 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-82863453-4	chr10	82863349	82863549	+	690.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042513, intron 2 of 14)	intron (NM_001042513, intron 2 of 14)	3108.0	NM_001042514	50493.0	Mm.210155	NM_015762	ENSMUSG00000020250	Txnrd1	TR|TR1|TrxR1	thioredoxin reductase 1	protein-coding	1.05314405805265	0.911537898382091	2.34763640473762	1.73072649534712	0.845054957539545	0.916473322509952	2.02798784817484	1.95518529486613	-0.252284155813697	0.85140920693219	0.998431161219273
Merged-chr19-29475033-2	chr19	29474933	29475133	+	716.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46954.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-29041399-1	chr7	29041299	29041499	+	572.0	f1_balb.idr	intron (NM_009109, intron 84 of 105)	B3|SINE|B2	42295.0	NR_035489	100316710.0		NR_035489	ENSMUSG00000089219	Mir1963	mir-1963|mmu-mir-1963	microRNA 1963	ncRNA	2.51226214574242	2.2810642805717	2.60703737223677	2.6413016615097	2.43310084954593	2.92399424127467	2.62659140501765	2.91744727092965	0.465809872169239	0.5199705467555	0.947641799425091
Merged-chr6-51466338-3	chr6	51466241	51466441	+	854.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_182650, exon 5 of 10)	exon (NM_182650, exon 5 of 10)	3553.0	NR_104468	53379.0	Mm.155896	NM_016806	ENSMUSG00000004980	Hnrnpa2b1	9130414A06Rik|Hnrpa2|Hnrpa2b1|hnrnp-A	heterogeneous nuclear ribonucleoprotein A2/B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-8899352-3	chr17	8899258	8899458	+	948.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347321, intron 2 of 21)	intron (NM_001347321, intron 2 of 21)	49373.0	NM_001347321	23984.0	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-100668160-1	chr15	100668060	100668260	+	625.0	f1_c57bl6.idr	intron (NM_001270537, intron 1 of 10)	intron (NM_001270537, intron 1 of 10)	1340.0	NM_001270537	668218.0	Mm.451225	NM_001270537	ENSMUSG00000098112	Bin2	-	bridging integrator 2	protein-coding	1.17378582510069	0.776870558041527	1.5213013324425	1.36331503599756	1.2962977795566	0.779722694804806	1.72824458765571	0.755902096289822	-0.0797201679924561	0.95626400974126	0.998431161219273
Merged-chr5-143509961-3	chr5	143509875	143510075	+	884.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347530, intron 3 of 6)	intron (NM_001347530, intron 3 of 6)	18018.0	NM_009007	19353.0	Mm.292510	NM_009007	ENSMUSG00000001847	Rac1	AL023026|D5Ertd559e	Rac family small GTPase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105172197-4	chr8	105172077	105172277	+	895.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161456, intron 2 of 4)	intron (NM_001161456, intron 2 of 4)	1503.0	NM_001161458	12400.0	Mm.2018	NM_022309	ENSMUSG00000031885	Cbfb	AI893578|PEA2|PEBP2b|Pebp2|Pebpb2	core binding factor beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-22498128-3	chr8	22498038	22498238	+	980.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011394, intron 1 of 10)	intron (NM_011394, intron 1 of 10)	-21259.0	NM_001146117	102032.0	Mm.378231	NM_001012667	ENSMUSG00000031534	Smim19	AI316807|BG694986|EST-c39	small integral membrane protein 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-138754451-2	chr5	138754351	138754551	+	916.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030565)	promoter-TSS (NM_030565)	-630.0	NM_030565	80752.0	Mm.320355	NM_030565	ENSMUSG00000025854	Fam20c	C76981|DMP-4|DMP4|GEF-CK|mKIAA4081	family with sequence similarity 20, member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117303778-4	chr8	117303683	117303883	+	985.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	-45387.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-108561611-2	chr9	108561511	108561711	+	671.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_011830, exon 3 of 14)	exon (NM_011830, exon 3 of 14)	1110.0	NM_011830	23918.0	Mm.6065	NM_011830	ENSMUSG00000062867	Impdh2	IMPD	inosine monophosphate dehydrogenase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-3144145-3	chr11	3144003	3144203	+	1000.0	f0_balb.idr|f1_balb.idr	intron (NM_030207, intron 18 of 32)	intron (NM_030207, intron 18 of 32)	20082.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-84960016-2	chr11	84959916	84960116	+	586.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007607, intron 1 of 7)	intron (NM_007607, intron 1 of 7)	2262.0	NM_007607	12351.0	Mm.1641	NM_007607	ENSMUSG00000000805	Car4	AW456718|Ca4	carbonic anhydrase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-74832297-4	chr11	74832198	74832398	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010813, intron 1 of 5)	CpG-2219	1374.0	NM_010813	17428.0	Mm.3759	NM_010813	ENSMUSG00000000282	Mnt	Rox|bHLHd3	max binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-101314767-4	chr4	101314675	101314875	+	860.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32252.0	NR_029537	387143.0		NR_029537	ENSMUSG00000065451	Mir101a	Mirn101|Mirn101a|miR-101|mir-101a	microRNA 101a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-109488039-2	chr4	109487939	109488139	+	555.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-11534.0	NM_013876	29864.0	Mm.392580	NM_013876	ENSMUSG00000028557	Rnf11	-	ring finger protein 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-66018370-2	chr5	66018270	66018470	+	589.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001127382, exon 8 of 8)	3' UTR (NM_001127382, exon 8 of 8)	-14085.0	NR_027961	231253.0	Mm.436542	NM_177679	ENSMUSG00000054598	9130230L23Rik	-	RIKEN cDNA 9130230L23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-21508680-1	chr12	21508580	21508780	+	629.0	f0_balb.idr	Intergenic	MTD|LTR|ERVL-MaLR	-91244.0	NM_011739	22630.0	Mm.289630	NM_011739	ENSMUSG00000076432	Ywhaq	2700028P07Rik|AA409740|AU021156|R74690	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	protein-coding	1.23231711383299	2.75120814317184	2.15495189486595	1.32499079967211	3.2451753381055	4.32662595942984	2.91727452585581	3.76504741747899	2.97904002806053	0.000250571430608212	0.00641469990989471
Merged-chr11-120790381-2	chr11	120790281	120790481	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026824, intron 11 of 13)	B1F|SINE|Alu	5866.0	NM_145370	209318.0	Mm.30195	NM_145370	ENSMUSG00000025156	Gps1	Cops1|Csn1|R75577|Sgn1	G protein pathway suppressor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-123748833-3	chr4	123748732	123748932	+	836.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023423, intron 1 of 4)	intron (NM_023423, intron 1 of 4)	1467.0	NM_023423	68050.0	Mm.27903	NM_023423	ENSMUSG00000023075	Akirin1	6330407G11Rik	akirin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-80958818-3	chr3	80958713	80958913	+	818.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45153.0	NM_001345955	14658.0	Mm.275639	NM_010298	ENSMUSG00000028020	Glrb	AI853901|Glyrb|spa|spastic	glycine receptor, beta subunit	protein-coding	2.24692977360233	2.03383313122548	2.75245539456177	2.67742580248235	2.47410679574878	2.865691353784	2.3132013332452	2.69076824175679	0.29135870891234	0.704572846346097	0.998431161219273
Merged-chr19-16353737-2	chr19	16353637	16353837	+	624.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008139, intron 5 of 6)	intron (NM_008139, intron 5 of 6)	-38733.0	NR_105832	102465218.0		NR_105832	ENSMUSG00000098718	Mir496b	Gm28028|mmu-mir-496b	microRNA 496b	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-53403383-2	chr19	53403283	53403483	+	768.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12749.0	NM_172429	76479.0	Mm.313687	NM_172429	ENSMUSG00000025024	Smndc1	-	survival motor neuron domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126587296-3	chr7	126587115	126587315	+	854.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_138310, exon 2 of 4)	exon (NM_138310, exon 2 of 4)	-1398.0	NM_001146311	12752.0	Mm.268930	NM_009907	ENSMUSG00000030720	Cln3	AI323623	ceroid lipofuscinosis, neuronal 3, juvenile (Batten, Spielmeyer-Vogt disease)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84965107-2	chr8	84965006	84965206	+	724.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027187, intron 4 of 7)	intron (NM_027187, intron 4 of 7)	905.0	NM_027187	69724.0	Mm.182470	NM_027187	ENSMUSG00000052926	Rnaseh2a	2400006P09Rik|RNASEHI|RNHIA|RNHL	ribonuclease H2, large subunit	protein-coding	1.35837607148895	2.79721517040141	2.17856905913027	1.97615811043499	1.36946110241024	2.72952821813014	1.20781787296139	2.85306276623363	0.178737795975211	0.864177432227169	0.998431161219273
Merged-chr18-4257091-3	chr18	4257034	4257234	+	968.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC3|LINE|L1	91302.0	NM_026092	67328.0	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-84599632-2	chr2	84599494	84599694	+	749.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49886.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	0.159244991817066	0.193446671721736	0.182504775757155	1.24838524198035	0.356100024402761	0.195880371399012	1.41202222712733	0.175408494756983	0.461946336281756	0.815045353496138	0.998431161219273
Merged-chr17-5721038-2	chr17	5720938	5721138	+	694.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 5 of 8)	MIR3|SINE|MIR	-77619.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-60362337-4	chr10	60362229	60362429	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028732, intron 3 of 6)	intron (NM_028732, intron 3 of 6)	15478.0	NM_028732	74048.0	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101379120-6	chr7	101379017	101379217	+	899.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040112, intron 1 of 30)	intron (NM_001040112, intron 1 of 30)	995.0	NM_001040112	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69121108-2	chr11	69121008	69121208	+	727.041626	f1_balb.idr|f1_c57bl6.idr	intron (NM_033041, intron 1 of 3)	intron (NM_033041, intron 1 of 3)	655.0	NM_033041	84653.0	Mm.98505	NM_033041	ENSMUSG00000023781	Hes7	bHLHb37	hes family bHLH transcription factor 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-145140941-4	chr5	145140827	145141027	+	832.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033313)	promoter-TSS (NM_001033313)	490.0	NM_001310770	231889.0	Mm.277413	NM_001008705	ENSMUSG00000038722	Bud31	C77604|EDG-2|EDG2|G10	BUD31 homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-80280586-4	chr18	80280499	80280699	+	798.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025861, intron 4 of 5)	intron (NM_025861, intron 4 of 5)	24293.0	NM_025861	66943.0	Mm.29247	NM_025861	ENSMUSG00000034006	Pqlc1	2310009N05Rik|4933425L21Rik|5730564E11Rik|C78974	PQ loop repeat containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-129584027-4	chr5	129583937	129584137	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011846)	promoter-TSS (NM_011846)	-132.0	NM_011846	23948.0	Mm.42047	NM_011846	ENSMUSG00000029436	Mmp17	MT4-MMP|MT4MMP|MTMMP4	matrix metallopeptidase 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-67297222-4	chr5	67297104	67297304	+	992.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9751.0	NM_178651	109108.0	Mm.234455	NM_178651	ENSMUSG00000029221	Slc30a9	2310024J23Rik|AL024256|GAC63|HUEL|znT-9	solute carrier family 30 (zinc transporter), member 9	protein-coding	1.81129969035861	2.81144088943755	1.82090023132898	1.12321954771526	2.43428654558468	1.190139179666	2.87798467467216	1.59726324410228	0.346086828845053	0.751918555185528	0.998431161219273
Merged-chr8-120667264-2	chr8	120667164	120667364	+	672.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009941)	promoter-TSS (NM_009941)	848.0	NM_010926	18117.0	Mm.2136	NM_010926	ENSMUSG00000031819	Emc8	Cox4nb|Fam158b|Noc4	ER membrane protein complex subunit 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69632028-2	chr11	69631928	69632128	+	625.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011814)	promoter-TSS (NM_011814)	-943.0	NM_011814	23879.0	Mm.41930	NM_011814	ENSMUSG00000018765	Fxr2	Fxr2h	fragile X mental retardation, autosomal homolog 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-11008404-4	chr16	11008297	11008497	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040518)	promoter-TSS (NR_040518)	-501.0	NR_040518	100043147.0	Mm.489001	NR_040518	ENSMUSG00000097056	Gm4262	-	predicted gene 4262	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-51294767-3	chr17	51294677	51294877	+	717.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_037268, intron 3 of 4)	intron (NR_037268, intron 3 of 4)	16789.0	NR_037253	100526485.0		NR_037253	ENSMUSG00000105330	Mir669a-6	mmu-mir-669a-6	microRNA 669a-6	ncRNA	2.13708357046407	2.00918332592586	1.04579017541198	1.02635972050088	2.36689652722197	2.14611073821159	1.05123755244568	1.76152834230517	0.682814758642112	0.581297368710977	0.966599221005409
Merged-chr1-135631661-4	chr1	135631539	135631739	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33863.0	NR_151586	215714.0	Mm.472859	NM_175447		Gm4793	EG215714	predicted gene 4793	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56476106-1	chr17	56476006	56476206	+	941.0	f0_c57.idr	intron (NM_001252455, intron 1 of 27)	CpG	374.0	NM_001252455	19280.0	Mm.258771	NM_011218	ENSMUSG00000013236	Ptprs	AL022616|PTP|PTP-NU3|PTPNU-3|PTPsigma|Ptpt9|R-PTP-S|RPTPsigma	protein tyrosine phosphatase, receptor type, S	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-54901910-2	chr1	54901810	54902010	+	580.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081433, intron 1 of 27)	intron (NM_001081433, intron 1 of 27)	24477.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-149696889-4	chr4	149696776	149696976	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029837, intron 1 of 23)	intron (NM_001029837, intron 1 of 23)	1832.0	NM_001164050	18707.0	Mm.229108	NM_008840	ENSMUSG00000039936	Pik3cd	2410099E07Rik|2610208K16Rik|AW545373|p110delta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding	4.12386934510518	3.98018295592998	3.46036080043612	3.60806419103443	4.15473674924821	3.60728852871701	3.04994454939359	3.69879558508284	-0.184785732215028	0.718614856744227	0.998431161219273
Merged-chr9-14501195-1	chr9	14501095	14501295	+	639.0	f0_balb.idr	promoter-TSS (NM_173433)	promoter-TSS (NM_173433)	576.0	NM_023153	66070.0	Mm.245938	NM_023153	ENSMUSG00000004096	Cwc15	0610040D20Rik|2900052N06Rik|Ed1|c11orf5|mED1	CWC15 spliceosome-associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-31124481-3	chr16	31124370	31124570	+	735.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030138, intron 10 of 22)	intron (NM_030138, intron 10 of 22)	-43038.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-84556360-4	chr10	84556255	84556455	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3017.0	NR_040658	442847.0	Mm.128292	NR_040658	ENSMUSG00000097076	Platr7	C330046G13Rik	pluripotency associated transcript 7	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-15764326-4	chr6	15764237	15764437	+	977.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175088, intron 3 of 4)	intron (NM_175088, intron 3 of 4)	43676.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-79627549-4	chr12	79627464	79627664	+	914.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	297169.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71004977-2	chr17	71004877	71005077	+	730.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2444.0	NM_026064	67268.0	Mm.489605	NM_026064	ENSMUSG00000024048	Myl12a	2900073G15Rik|AI838292|C80200	myosin, light chain 12A, regulatory, non-sarcomeric	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-74951176-2	chr5	74951076	74951276	+	561.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045866, intron 1 of 4)	intron (NR_045866, intron 1 of 4)	1982.0	NR_045866	619945.0	Mm.359372	NM_001037908	ENSMUSG00000072874	Gm6116	EG619945	predicted gene 6116	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-77923679-4	chr14	77923568	77923768	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029495, intron 1 of 11)	intron (NM_029495, intron 1 of 11)	19429.0	NM_029495	108670.0	Mm.68134	NM_029495	ENSMUSG00000022014	Epsti1	2310046K10Rik|5033415K03Rik|BRESI1	epithelial stromal interaction 1 (breast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-115825450-4	chr4	115825342	115825542	+	983.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR33|LTR|ERVL	-2650.0	NM_175308	100465.0	Mm.35571	NM_175308	ENSMUSG00000028709	Mob3c	AW822253|D130076I06Rik|Mobkl2c	MOB kinase activator 3C	protein-coding	1.35680426902499	2.8090640737739	2.38346481723822	2.18435516928312	2.89972054578716	2.48480017627674	2.73594435807767	2.55423477392317	0.840521594261022	0.321775060811487	0.823903365381149
Merged-chr11-26587756-4	chr11	26587660	26587860	+	978.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027260, intron 2 of 12)	intron (NM_027260, intron 2 of 12)	6160.0	NM_027260	69922.0	Mm.285351	NM_027260	ENSMUSG00000064090	Vrk2	2810003O05Rik|AI447698	vaccinia related kinase 2	protein-coding	2.70369842773408	2.28034144909973	2.49942284915136	2.75556835323864	2.88163544527545	3.04717828663157	3.03476757701994	1.98175436931331	0.45246167036826	0.542677514698454	0.954978706563809
Merged-chr8-95420693-3	chr8	95420635	95420835	+	907.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008187, intron 5 of 5)	intron (NM_008187, intron 5 of 5)	14134.0	NM_008187	14894.0	Mm.2080	NM_008187	ENSMUSG00000031796	Cfap20	2600014O15Rik|AL024127|Gtl3|T10-2A2	cilia and flagella associated protein 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-16149271-4	chr19	16149179	16149379	+	857.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008139, intron 1 of 6)	intron (NM_008139, intron 1 of 6)	-14819.0	NR_033228	595139.0	Mm.405662	NR_033228		E030024N20Rik	9030417F11Rik|Ppia-ps8	peptidylprolyl isomerase A pseudogene 8	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-70107113-4	chr12	70106994	70107194	+	883.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286079, intron 1 of 28)	MIRb|SINE|MIR	-4240.0	NM_001081453	18080.0	Mm.244047	NM_008697	ENSMUSG00000021068	Nin	3110068G20Rik|AI385615|AU024711|mKIAA1565	ninein	protein-coding	2.38372367044248	3.07678408261832	1.77067874811156	2.39224056571622	2.60200477985775	2.69360255208625	3.15341869115187	2.52479614536431	0.555781589087673	0.473570977537665	0.926125823511231
Merged-chr10-44369826-2	chr10	44369726	44369926	+	602.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10150.0	NR_035450	100316688.0		NR_035450	ENSMUSG00000089260	Mir1929	mir-1929|mmu-mir-1929	microRNA 1929	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-5866858-4	chr13	5866767	5866967	+	790.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011803, intron 3 of 3)	intron (NM_011803, intron 3 of 3)	5378.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127717196-4	chr7	127717068	127717268	+	930.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001301283, exon 3 of 3)	exon (NM_001301283, exon 3 of 3)	4231.0	NM_001301283	13019.0	Mm.389954	NM_007795	ENSMUSG00000042340	Ctf1	CT-1	cardiotrophin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-39527646-4	chr1	39527542	39527742	+	978.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8059.0	NM_028043	52846.0	Mm.259421	NM_028043	ENSMUSG00000003135	Cnot11	2410015L18Rik|C40|D1Bwg0212e	CCR4-NOT transcription complex, subunit 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-127235995-4	chr4	127235932	127236132	+	957.033325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198618, intron 11 of 11)	CpG	-7752.0	NM_030252	80284.0	Mm.139607	NM_030252	ENSMUSG00000042380	Smim12	BC003266	small integral membrane protein 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-53800226-3	chr19	53800119	53800319	+	778.888855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170847, intron 1 of 13)	intron (NM_001170847, intron 1 of 13)	-92012.0	NM_011050	18569.0	Mm.1605	NM_011050	ENSMUSG00000024975	Pdcd4	D19Ucla1|Ma3|Tis	programmed cell death 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-126616678-2	chr3	126616530	126616730	+	691.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025438, intron 2 of 18)	ORR1A4|LTR|ERVL-MaLR	19679.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-10971640-2	chr16	10971540	10971740	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019980, intron 1 of 3)	URR1B|DNA|hAT-Charlie	21481.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-89078903-4	chr1	89078821	89079021	+	932.783325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133816, intron 1 of 5)	intron (NM_133816, intron 1 of 5)	8506.0	NM_133816	98402.0	Mm.170983	NM_133816	ENSMUSG00000036206	Sh3bp4	AI594717|AW227605|BOG25	SH3-domain binding protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-13557503-8	chr2	13557402	13557602	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12838.0	NM_010067	13434.0	Mm.6979	NM_010067	ENSMUSG00000026723	Trdmt1	Dnmt2|Rnmt2	tRNA aspartic acid methyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81306249-2	chr10	81306149	81306349	+	719.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001293647, intron 4 of 17)	intron (NM_001293647, intron 4 of 17)	13286.0	NM_001146687	18717.0	Mm.24222	NM_008844	ENSMUSG00000034902	Pip5k1c	AI115456|AI835305|Pip5kIgamma	phosphatidylinositol-4-phosphate 5-kinase, type 1 gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-13356603-2	chr14	13356503	13356703	+	979.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028052, intron 2 of 5)	intron (NM_028052, intron 2 of 5)	71823.0	NM_028052	72003.0	Mm.317515	NM_028052	ENSMUSG00000056296	Synpr	1500003F20Rik|SPO	synaptoporin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-79848399-2	chr10	79848299	79848499	+	540.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 3 of 4)	RLTR11A2|LTR|ERVK	-6033.0	NM_001077363	19205.0	Mm.265610	NM_008956	ENSMUSG00000006498	Ptbp1	AA407203|AL033359|HNRPI|PTB-1|PTB2|PTB3|PTB4|Ptb|pPTB	polypyrimidine tract binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-58503227-4	chr4	58503119	58503319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172989, intron 2 of 3)	ORR1D2|LTR|ERVL-MaLR	-3816.0	NM_001290486	14745.0	Mm.4772	NM_010336	ENSMUSG00000038668	Lpar1	AI326300|Edg2|Gpcr26|Kdt2|lpA1|vzg-1	lysophosphatidic acid receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-66793614-4	chr4	66793505	66793705	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-33946.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-75886479-4	chr16	75886395	75886595	+	928.2708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023380, intron 2 of 7)	intron (NM_023380, intron 2 of 7)	22771.0	NM_023380	67742.0	Mm.131406	NM_023380	ENSMUSG00000022876	Samsn1	4930571B16Rik|930571B16Rik|Hacs1|SLy2	SAM domain, SH3 domain and nuclear localization signals, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-28161742-2	chr5	28161642	28161842	+	555.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3954.0	NM_010134	13799.0	Mm.4298	NM_010134	ENSMUSG00000039095	En2	BB131122|En-2	engrailed 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-25841950-6	chr14	25841837	25842037	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013469)	promoter-TSS (NM_013469)	-218.0	NM_013469	11744.0	Mm.294083	NM_013469	ENSMUSG00000021866	Anxa11	A830099O17Rik|Anx11	annexin A11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-84664877-2	chr18	84664777	84664977	+	556.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14782.0	NM_177450	338403.0	Mm.23278	NM_177450	ENSMUSG00000056162	Cndp1	AI746433|Cn1	carnosine dipeptidase 1 (metallopeptidase M20 family)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45461667-2	chr7	45461567	45461767	+	980.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_007527)	TTS (NM_007527)	-1781.0	NM_010240	14325.0	Mm.30357	NM_010240	ENSMUSG00000050708	Ftl1	Ftl|Ftl-1|L-ferritin	ferritin light polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-117405635-4	chr2	117405526	117405726	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MEd|LINE|L1	-62749.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-119667574-1	chr4	119667474	119667674	+	595.5	f0_balb.idr	Intergenic	Intergenic	-8629.0	NM_008191	14916.0	Mm.278	NM_008191	ENSMUSG00000032978	Guca2b	AV066530|Gcap2|Ugn	guanylate cyclase activator 2b (retina)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124328004-4	chr5	124327910	124328110	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028310)	promoter-TSS (NM_028310)	-38.0	NM_001277867	269702.0	Mm.60224	NM_001081323	ENSMUSG00000038126	Mphosph9	4930548D04Rik|9630025B04Rik|AW413446|AW547060|B930097C17Rik|C87456|MPP-9|MPP9	M-phase phosphoprotein 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-8768870-4	chr10	8768775	8768975	+	980.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 8 of 19)	intron (NM_175155, intron 8 of 19)	117195.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0.340279846512037	0.231012063842542	0.730715132760845	0.222758470225168	0.790995493412098	0.232073178259925	0.640009656043786	0.223381071142866	0.722321187663587	0.717885190875461	1
Merged-chr6-75822385-2	chr6	75822285	75822485	+	977.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1420092.0	NR_155299	74342.0	Mm.292568	NM_028880	ENSMUSG00000060780	Lrrtm1	4632401D06Rik|AW125451	leucine rich repeat transmembrane neuronal 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-74906586-1	chr9	74906486	74906686	+	766.0	f1_balb.idr	Intergenic	Intergenic	44665.0	NM_008262	15379.0	Mm.303355	NM_008262	ENSMUSG00000043013	Onecut1	D9Ertd423e|HNF-6|Hfh12|Hnf6|Hnf6b|OC-1|Oc1	one cut domain, family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-111058673-4	chr9	111058550	111058750	+	901.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1132.0	NM_001302376	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	1.33692816741741	0.874808472942288	0.853977483584138	2.34635441081269	1.96063402003669	0.879407330202296	1.10690622829742	1.9022266652669	0.0528692157920383	0.969125374856082	0.998431161219273
Merged-chr5-21424807-4	chr5	21424711	21424911	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029195)	promoter-TSS (NM_029195)	-92.0	NM_177869	330050.0	Mm.40655	NM_177869	ENSMUSG00000047221	Fam185a	4631428I10|AI847670	family with sequence similarity 185, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-123112943-4	chr10	123112842	123113042	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_027604, exon 22 of 22)	3' UTR (NM_027604, exon 22 of 22)	-36437.0	NM_001163025	67074.0	Mm.169924	NM_153395	ENSMUSG00000034602	Mon2	2610528O22Rik|AW495628|Sf21|mKIAA1040	MON2 homolog, regulator of endosome to Golgi trafficking	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-85651388-1	chr8	85651288	85651488	+	784.0	f1_balb.idr	intron (NM_001357288, intron 6 of 8)	L1MA5|LINE|L1	39621.0	NM_001081324	74513.0	Mm.126079	NM_001081324	ENSMUSG00000036902	Neto2	5530601C23Rik|AI854825|BTCL2	neuropilin (NRP) and tolloid (TLL)-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-74306396-2	chr17	74306296	74306496	+	552.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001146224, intron 3 of 3)	(TTTA)n|Simple_repeat|Simple_repeat	9815.0	NM_001146224	66310.0	Mm.28536	NM_024428	ENSMUSG00000024067	Dpy30	2810410M20Rik|C87842	dpy-30, histone methyltransferase complex regulatory subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-31360407-2	chr6	31360307	31360507	+	664.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38366.0	NR_040300	100503869.0	Mm.370532	NR_040300	ENSMUSG00000086212	Mkln1os	Gm13845	muskelin 1, intracellular mediator containing kelch motifs, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-79698420-4	chr2	79698313	79698513	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9367.0	NM_172420	75276.0	Mm.257373	NM_172420	ENSMUSG00000034683	Ppp1r1c	4930565M23Rik|4930579P15Rik	protein phosphatase 1, regulatory (inhibitor) subunit 1C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-119101722-2	chr9	119101622	119101822	+	948.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177117)	promoter-TSS (NM_177117)	-756.0	NM_177117	320256.0	Mm.110648	NM_177117	ENSMUSG00000038060	Dlec1	D630005C06Rik	deleted in lung and esophageal cancer 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120989793-3	chr11	120989659	120989859	+	879.93335	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027874, intron 1 of 9)	intron (NM_027874, intron 1 of 9)	1574.0	NM_139059	104318.0	Mm.216227	NM_027874	ENSMUSG00000025162	Csnk1d	1200006A05Rik|AA409348|D930010H05Rik	casein kinase 1, delta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-109043457-1	chr12	109043357	109043557	+	555.0	f1_c57bl6.idr	intron (NM_001163175, intron 2 of 6)	intron (NM_001163175, intron 2 of 6)	24760.0	NM_001163175	380785.0	Mm.342085	NM_001163175	ENSMUSG00000040867	Begain	BM948371|Gm897	brain-enriched guanylate kinase-associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-66510518-2	chr9	66510418	66510618	+	843.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_175206, exon 2 of 2)	3' UTR (NM_175206, exon 2 of 2)	4075.0	NM_175206	74165.0	Mm.297998	NM_175206	ENSMUSG00000050503	Fbxl22	1110004B15Rik	F-box and leucine-rich repeat protein 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-56026833-3	chr4	56026738	56026938	+	822.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-494363.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-118578089-4	chr14	118577985	118578185	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163676, intron 18 of 29)	ORR1E|LTR|ERVL-MaLR	14387.0	NR_105815	102465208.0		NR_105815	ENSMUSG00000098433	Mir6391	Gm27914|mmu-mir-6391	microRNA 6391	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-172308316-2	chr1	172308160	172308360	+	956.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4107.0	NM_080419	140559.0	Mm.271717	NM_080419	ENSMUSG00000038034	Igsf8	ESTM34|EWI-2|KCT-4|PGRL	immunoglobulin superfamily, member 8	protein-coding	2.2289822583926	2.97590078331879	1.21241388632093	2.12810735293011	2.72837820497014	2.74826649264863	1.22058359111616	1.45090056633915	-0.111659179755799	0.916809465703236	0.998431161219273
Merged-chr3-60472903-6	chr3	60472720	60472920	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253713)	promoter-TSS (NM_001253713)	-10.0	NM_001253713	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53098181-2	chr4	53098081	53098281	+	678.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 7 of 49)	intron (NM_013454, intron 7 of 49)	61714.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-75083166-2	chr8	75083066	75083266	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10452.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-3716500-2	chr2	3716400	3716600	+	764.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025626, intron 1 of 3)	intron (NM_025626, intron 1 of 3)	3042.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-24698416-1	chr16	24698316	24698516	+	547.0	f1_c57bl6.idr	intron (NM_178665, intron 7 of 12)	Lx3C|LINE|L1	-23439.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-44964961-2	chr16	44964861	44965061	+	675.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027578, intron 4 of 4)	intron (NM_027578, intron 4 of 4)	21283.0	NM_001128132	74603.0	Mm.297337	NM_027578	ENSMUSG00000036172	Cd200r3	4733401I18Rik|4833409J19Rik|AI505817|BB106877|mCD200RLb	CD200 receptor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-96978350-2	chr11	96978250	96978450	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080964)	promoter-TSS (NM_001080964)	-662.0	NM_001080964	78912.0	Mm.491183	NM_030220	ENSMUSG00000018678	Sp2	4930480I16Rik|mKIAA0048	Sp2 transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-54564150-4	chr1	54564049	54564249	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RCHARR1|DNA|hAT-Charlie	-6465.0	NM_001163314	241062.0	Mm.103539	NM_175508	ENSMUSG00000073678	Pgap1	5033403E17Rik|9030223K07Rik|A530084K22|D230012E17Rik|oto	post-GPI attachment to proteins 1	protein-coding	2.26798887599521	2.41782202481247	1.88364399892024	2.5854567302346	2.17774021024044	3.02873931126643	2.22278706219402	2.15668758298609	0.310141847829964	0.708183410722626	0.998431161219273
Merged-chr6-99784991-4	chr6	99784874	99785074	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR23|LTR|ERV1	-58582.0	NM_001037539	50501.0	Mm.87365	NM_015768	ENSMUSG00000030069	Prok2	Bv8|PK2|Prok1	prokineticin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-120136332-4	chr10	120136242	120136442	+	829.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-23377.0	NM_080446	117599.0	Mm.214703	NM_080446	ENSMUSG00000020228	Helb	AI447783|D10Ertd664e	helicase (DNA) B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-104099519-4	chr8	104099432	104099632	+	835.741638	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131138, intron 1 of 2)	intron (NR_131138, intron 1 of 2)	-2093.0	NM_009868	12562.0	Mm.21767	NM_009868	ENSMUSG00000031871	Cdh5	7B4|AA408225|Cd144|VE-Cad|VECD|VEcad|Vec	cadherin 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-164470418-3	chr2	164470276	164470476	+	753.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001271575)	TTS (NM_001271575)	3348.0	NM_001271575	73603.0	Mm.472883	NM_001271575	ENSMUSG00000017720	Trp53tg5	1700126L10Rik	transformation related protein 53 target 5	protein-coding	1.07366913767401	1.54992618292605	1.33568795044837	1.29839496195146	1.80419699133808	0.944486716477685	2.29978782939195	1.30498434010503	1.2594197511064	0.295821486809805	0.798904456500008
Merged-chr1-144283990-3	chr1	144283891	144284091	+	791.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-34887.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133410709-1	chr4	133410609	133410809	+	548.0	f1_balb.idr	intron (NM_016981, intron 1 of 11)	intron (NM_016981, intron 1 of 11)	40933.0	NR_039582	100628620.0		NR_039582	ENSMUSG00000092745	Mir5122	mmu-mir-5122|mu-mir-5122	microRNA 5122	ncRNA	-0.288698144848219	-0.724499843572694	-0.560326900995572	-0.729576348701218	-0.732675664450996	-0.723850338797464	-0.726739556357368	-0.43886718536209	-1.0616652088535	0.705653785731624	1
Merged-chr1-171184513-4	chr1	171184417	171184617	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025557, intron 1 of 2)	URR1B|DNA|hAT-Charlie	11751.0	NM_025557	66425.0	Mm.482117	NM_025557	ENSMUSG00000038370	Pcp4l1	1500036F01Rik	Purkinje cell protein 4-like 1	protein-coding	4.53430628849496	3.56477260107069	4.71266086355191	4.89592008563464	4.40945377042774	4.84705412133024	4.28507211072687	4.81201046685458	0.108924932182072	0.788479716603035	0.998431161219273
Merged-chr8-116980283-4	chr8	116980193	116980393	+	997.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1334.0	NM_001357255	69528.0	Mm.272846	NM_027103	ENSMUSG00000031847	1700030J22Rik	-	RIKEN cDNA 1700030J22 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-121469601-4	chr7	121469495	121469695	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081327, intron 1 of 1)	G-rich|Low_complexity|Low_complexity	77299.0	NM_001081327	195646.0	Mm.247449	NM_177575	ENSMUSG00000046321	Hs3st2	6430516N12Rik|A830061E14Rik|AW491345	heparan sulfate (glucosamine) 3-O-sulfotransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-128091704-2	chr6	128091604	128091804	+	616.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_175414, intron 1 of 8)	intron (NM_175414, intron 1 of 8)	51874.0	NM_175414	109246.0	Mm.21814	NM_175414	ENSMUSG00000030352	Tspan9	6720474K14Rik|9430079M16Rik|AU018597|Tspan-9	tetraspanin 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-17360853-2	chr19	17360759	17360959	+	734.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010265, intron 1 of 2)	MER92B|LTR|ERV1	-4192.0	NM_173442	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	0.705657335695847	0.353889185147708	0.522382519330859	1.05276708382187	0.812390237223684	0.355423183283523	0.348582210459127	0.647852153818266	-0.780939165246562	0.658912642264364	1
Merged-chr6-5159520-4	chr6	5159424	5159624	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181595, intron 15 of 15)	intron (NM_181595, intron 15 of 15)	34422.0	NM_011134	18979.0	Mm.237657	NM_011134	ENSMUSG00000002588	Pon1	Pon	paraoxonase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-73651089-5	chr5	73650976	73651176	+	893.81665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178387)	promoter-TSS (NM_178387)	-304.0	NM_178387	73472.0	Mm.87067	NM_178387	ENSMUSG00000029155	Spata18	1700067I02Rik	spermatogenesis associated 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-150120715-2	chr5	150120615	150120815	+	625.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	102040.0	NM_001289566	140498.0	Mm.444643	NM_080468	ENSMUSG00000053368	Rxfp2	Gpr106|Great|Lgr8	relaxin/insulin-like family peptide receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-109245834-3	chr4	109245715	109245915	+	668.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033226, intron 5 of 7)	intron (NM_001033226, intron 5 of 7)	10183.0	NM_001033226	108802.0	Mm.318248	NM_001033226	ENSMUSG00000028558	Calr4	4933403L16Rik|AU017583	calreticulin 4	protein-coding	-1.84303373260285	-1.81303463126392	-1.82210660711932	-1.82955859819738	-1.84092785115721	-1.81106869625141	-1.8200529106377	-1.54273750312762	1.50114612804783	0.670102668014672	1
Merged-chr7-132302257-2	chr7	132302157	132302357	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029935, intron 1 of 7)	intron (NM_029935, intron 1 of 7)	-13407.0	NR_028578	100043682.0	Mm.482794	NR_028578	ENSMUSG00000109270	Gm10584	-	predicted gene 10584	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-6398720-4	chr7	6398630	6398830	+	886.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15412.0	NM_175247	22690.0	Mm.127014	NM_175247	ENSMUSG00000062861	Zfp28	2810438M17Rik|Zfp-28|mkr-5	zinc finger protein 28	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97278573-4	chr6	97278477	97278677	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-25797.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-114836840-3	chr6	114836778	114836978	+	644.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253718, intron 19 of 19)	intron (NM_001253718, intron 19 of 19)	84943.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81430682-10	chr10	81430519	81430719	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-3446.0	NM_026756	18029.0	Mm.426936	NM_008688	ENSMUSG00000055053	Nfic	1110019L22Rik|1500041O16Rik|AA589446|AI746521|NF1-C	nuclear factor I/C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-11771921-4	chr2	11771820	11772020	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001348235, intron 1 of 20)	intron (NM_001348235, intron 1 of 20)	5665.0	NM_001348234	50755.0	Mm.24088	NM_015792	ENSMUSG00000058594	Fbxo18	AU015756|Fbh1|Fbx18	F-box protein 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-62251235-4	chr11	62251124	62251324	+	979.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007413, intron 1 of 1)	intron (NM_007413, intron 1 of 1)	2240.0	NM_007413	11541.0	Mm.40740	NM_007413	ENSMUSG00000018500	Adora2b	A2BAR|A2BR|A2b|AA2BR|AI480866|AI605384	adenosine A2b receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-82218976-4	chr15	82218871	82219071	+	923.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5409.0	NM_028075	72049.0	Mm.240047	NM_028075	ENSMUSG00000068105	Tnfrsf13c	2010006P15Rik|BAFF-R|Baffr|Bcmd|Bcmd-1|Bcmd1|Lvis22	tumor necrosis factor receptor superfamily, member 13c	protein-coding	1.76752276460018	0.913226935103576	2.32476174292421	0.868191805719838	2.51066380759034	0.918718724091274	0.893838707789854	1.89287689375322	0.30603933809819	0.895348593840832	0.998431161219273
Merged-chr8-109681626-3	chr8	109681495	109681695	+	769.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155034, intron 4 of 10)	MTB_Mm|LTR|ERVL-MaLR	11699.0	NR_155034	71955.0	Mm.290036	NM_028018	ENSMUSG00000031729	Ist1	2400003C14Rik|AW536298|mKIAA0174	increased sodium tolerance 1 homolog (yeast)	protein-coding	0.22828023711533	-0.299895758779274	-0.30394615252059	0.207860449353785	-0.311453047732428	-0.108617961269204	-0.303053910855741	-0.306518536745603	-2.67413214322184	0.279787422493108	1
Merged-chr17-28057377-2	chr17	28057277	28057477	+	573.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001286040, exon 22 of 25)	exon (NM_001286040, exon 22 of 25)	23207.0	NM_001357681	21463.0	Mm.29758	NM_013687	ENSMUSG00000062859	Tcp11	D17Ken1|Tcp-11	t-complex protein 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-53423939-2	chr19	53423839	53424039	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33305.0	NM_172429	76479.0	Mm.313687	NM_172429	ENSMUSG00000025024	Smndc1	-	survival motor neuron domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-85853489-4	chr1	85853403	85853603	+	995.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41007.0	NM_022417	64294.0	Mm.29870	NM_022417	ENSMUSG00000026223	Itm2c	3110038L02Rik|BRI3|Bricd2c|E25|E25C|ITM3	integral membrane protein 2C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-11147273-2	chr4	11147173	11147373	+	891.2999880000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9168.0	NM_001199105	60599.0	Mm.393018	NM_021897	ENSMUSG00000028211	Trp53inp1	2700057G22Rik|SIP|SIP18|SIP27|Stinp|Teap|p53DINP1	transformation related protein 53 inducible nuclear protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-40473851-1	chr12	40473751	40473951	+	640.0	f0_balb.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	27798.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-75512663-4	chr10	75512549	75512749	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347201, intron 1 of 5)	intron (NM_001347201, intron 1 of 5)	4732.0	NM_175133	68778.0	Mm.29382	NM_175133	ENSMUSG00000033416	Gucd1	1110038D17Rik	guanylyl cyclase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-64105488-4	chr9	64105418	64105618	+	916.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11629.0	NM_145835	235435.0	Mm.436581	NM_145835	ENSMUSG00000032401	Lctl	E130104I05Rik|KLPH	lactase-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-87407069-4	chr12	87406970	87407170	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-18715.0	NM_011479	20773.0	Mm.565	NM_011479	ENSMUSG00000021036	Sptlc2	LCB2|LCB2a|Spt2	serine palmitoyltransferase, long chain base subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-72323260-4	chr8	72323168	72323368	+	975.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4206.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	1.91830850180136	1.90831102718323	0.902015979520984	1.77604397313186	1.36074378095246	1.68287165338051	0.90599458681006	0.89039573222261	-1.47063318166457	0.270134728470619	0.773381444690463
Merged-chr2-45116051-7	chr2	45115836	45116036	+	924.31427	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355288, intron 1 of 10)	intron (NM_001355288, intron 1 of 10)	1506.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-23433298-2	chr1	23433198	23433398	+	577.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER5|LTR|ERV1	-50123.0	NM_001081079	70155.0	Mm.28013	NM_001081079	ENSMUSG00000026158	Ogfrl1	2210417C17Rik	opioid growth factor receptor-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-144902778-2	chr6	144902678	144902878	+	592.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	146034.0	NM_001024468	12035.0	Mm.4606	NM_007532	ENSMUSG00000030268	Bcat1	BCATc|Eca39	branched chain aminotransferase 1, cytosolic	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-84283250-2	chr1	84283150	84283350	+	556.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001003948, intron 1 of 2)	intron (NM_001003948, intron 1 of 2)	1395.0	NM_001003948	98496.0	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4|P-CLI1	phosphotyrosine interaction domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-38022898-4	chr19	38022790	38022990	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302140, intron 2 of 53)	intron (NM_001302140, intron 2 of 53)	20687.0	NM_001099634	226101.0	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding	3.88992020185708	3.73585498152535	4.71010683377313	4.63158635177353	4.59874434343179	4.03083014721025	5.0703662258542	3.85037314776707	0.21473278399084	0.636073722514279	0.982417279970648
Merged-chr11-120046933-2	chr11	120046847	120047047	+	946.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001198785, exon 1 of 14)	exon (NM_001198785, exon 1 of 14)	198.0	NM_001198785	11302.0	Mm.6826	NM_007377	ENSMUSG00000025375	Aatk	AATYK|aatyk1|mKIAA0641	apoptosis-associated tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-31066195-2	chr6	31066095	31066295	+	634.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3102.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19208078-2	chr7	19207978	19208178	+	597.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4460.0	NM_175668	319197.0	Mm.135984	NM_175668	ENSMUSG00000044317	Gpr4	-	G protein-coupled receptor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-30828323-3	chr14	30828218	30828418	+	777.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028839, intron 1 of 7)	intron (NM_028839, intron 1 of 7)	2724.0	NM_028839	69179.0	Mm.143025	NM_028839	ENSMUSG00000006526	Tmem110	1810038N08Rik|2310014H19Rik|AW554125|STIMATE	transmembrane protein 110	protein-coding	0.0645098093230348	-0.0634042842945873	0.694796776611844	-0.0726685051543381	0.194987448594215	0.299636584108815	-0.0674795752263861	-0.0719634005655646	-0.806640789907797	0.707385600711212	1
Merged-chr9-53603560-4	chr9	53603468	53603668	+	897.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144784, intron 1 of 11)	intron (NM_144784, intron 1 of 11)	6782.0	NM_144784	110446.0	Mm.293233	NM_144784	ENSMUSG00000032047	Acat1	6330585C21Rik|Acat	acetyl-Coenzyme A acetyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-51265408-6	chr11	51265349	51265549	+	793.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304744, intron 1 of 10)	intron (NM_001304744, intron 1 of 10)	-1787.0	NM_001358281	193286.0	Mm.80975	NM_177567	ENSMUSG00000045942	BC049762	4930503F14	cDNA sequence BC049762	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128779829-2	chr2	128779729	128779929	+	745.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008587, exon 13 of 19)	exon (NM_008587, exon 13 of 19)	-38474.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166676649-4	chr2	166676557	166676757	+	955.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	37175.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-105485147-4	chr11	105485058	105485258	+	958.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MDa|LINE|L1	-28423.0	NM_001039242	632687.0	Mm.121570	NM_172568	ENSMUSG00000078627	March10	4933417C16Rik|AV039223|Rnf190	membrane-associated ring finger (C3HC4) 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-58690579-4	chr16	58690453	58690653	+	838.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20345.0	NM_007757	12892.0	Mm.291519	NM_007757	ENSMUSG00000022742	Cpox	CPX|Cpo|HCP|cac|nct	coproporphyrinogen oxidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-46886126-4	chr14	46886013	46886213	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037221, intron 2 of 12)	intron (NM_001037221, intron 2 of 12)	3148.0	NM_001037221	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-42826899-2	chr13	42826799	42826999	+	582.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001005740, intron 1 of 12)	intron (NM_001005740, intron 1 of 12)	-39348.0	NM_001302636	218194.0	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-18424814-2	chr16	18424714	18424914	+	850.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111062, intron 1 of 5)	intron (NM_001111062, intron 1 of 5)	-1603.0	NM_001353143	26462.0	Mm.390906	NM_013711	ENSMUSG00000075704	Txnrd2	AA118373|ESTM573010|TGR|Tr3|Trxr2|Trxrd2	thioredoxin reductase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-4650413-4	chr13	4650305	4650505	+	982.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41241.0	NM_018859	56043.0	Mm.251908	NM_018859	ENSMUSG00000045410	Akr1e1	1810061I10Rik|Akr1e2	aldo-keto reductase family 1, member E1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-13360855-4	chr1	13360761	13360961	+	894.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008678, intron 1 of 22)	RLTR12BD_Mm|LTR|ERVK	11568.0	NM_001302702	17978.0	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	-0.434076717779784	-0.42179821347921	-0.425825167113016	-0.428929216284571	-0.161734415619577	-0.223616748355037	-0.424937353013432	0.294234895280759	3.58384715302718	0.147452325692557	1
Merged-chr2-92004882-3	chr2	92004795	92004995	+	736.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011957, intron 1 of 11)	Charlie9|DNA|hAT-Charlie	19275.0	NM_011957	26427.0	Mm.10353	NM_011957	ENSMUSG00000027230	Creb3l1	Oasis	cAMP responsive element binding protein 3-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21027345-2	chr9	21027245	21027445	+	804.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010493, intron 5 of 6)	intron (NM_010493, intron 5 of 6)	-2028.0	NM_023892	78369.0	Mm.30220	NM_023892	ENSMUSG00000001014	Icam4	1810015M19Rik|Cd242|ICAM-4	intercellular adhesion molecule 4, Landsteiner-Wiener blood group	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-31814707-1	chr11	31814607	31814807	+	631.0	f1_c57bl6.idr	intron (NR_102312, intron 1 of 4)	intron (NR_102312, intron 1 of 4)	9840.0	NR_102310	414116.0	Mm.150222	NR_102310	ENSMUSG00000085772	D630024D03Rik	-	RIKEN cDNA D630024D03 gene	ncRNA	2.01319970490145	1.52984154606707	3.42524634304087	4.06887527551251	2.78966696224639	2.10272535024604	2.93546818752889	3.34603766862172	-0.47590829376439	0.57244800479251	0.963911477197412
Merged-chr9-105121384-4	chr9	105121297	105121497	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10408.0	NM_029385	75686.0	Mm.305810	NM_029385	ENSMUSG00000032565	Nudt16	2310041H06Rik|2810047L04Rik|2900006H04Rik|AI851783	nudix (nucleoside diphosphate linked moiety X)-type motif 16	protein-coding	4.87285384284234	3.98630303204035	6.50581862826751	5.91004511268288	5.7595138103542	5.0457338228132	6.37114609437077	4.91498177797031	0.0255438612390498	0.970460144151233	0.998431161219273
Merged-chr10-118604149-3	chr10	118604057	118604257	+	739.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-47632.0	NR_104123	103214.0	Mm.30529	NR_104123	ENSMUSG00000112230	Ifngas1	AI447422|Tmevpg1	Ifng antisense RNA 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71299081-1	chr8	71298981	71299181	+	542.0	f1_c57bl6.idr	intron (NM_001142322, intron 2 of 39)	intron (NM_001142322, intron 2 of 39)	26367.0	NM_001142323	17925.0	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	1.60972522907004	1.20387348624741	1.17000237207277	1.46180407705026	1.10419461025626	1.21138622699902	1.77309929286757	2.21704905067867	0.973330538926301	0.407889240522385	0.891845785649541
Merged-chr6-51629806-2	chr6	51629706	51629906	+	698.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	84513.0	NM_001361577	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41764991-3	chr19	41764901	41765101	+	738.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18040.0	NR_040320	100502871.0	Mm.394485	NR_040320		Gm19424	-	predicted gene, 19424	ncRNA	3.53728881779681	4.08009243755447	3.89354623070284	4.44213105148442	1.25755902191824	2.68646043730983	1.41796834955467	1.66295942015157	-3.91392373966709	8.22986649526393e-07	5.5266010192263e-05
Merged-chr4-85374229-2	chr4	85374134	85374334	+	674.0	f0_c57.idr|f1_c57bl6.idr	intron (NM_019535, intron 3 of 8)	intron (NM_019535, intron 3 of 8)	168778.0	NM_019535	20404.0	Mm.143603	NM_019535	ENSMUSG00000028488	Sh3gl2	9530001L19Rik|AI120490|AW555077|B930049H17Rik|EEN-B1|SH3PA|Sh3d2a	SH3-domain GRB2-like 2	protein-coding	2.12173319459859	2.62331772408163	3.14339912070211	2.35388254124404	1.63410936877275	1.11780972150239	1.08301146012023	1.05175266097271	-3.91870153991665	0.000983852447180871	0.0192670212099174
Merged-chr9-70081214-1	chr9	70081114	70081314	+	592.0	f0_balb.idr	Intergenic	Intergenic	-43126.0	NM_028087	72077.0	Mm.195555	NM_028087	ENSMUSG00000032226	Gcnt3	2010013H22Rik|2210021I22Rik|2210401J11Rik	glucosaminyl (N-acetyl) transferase 3, mucin type	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56673242-4	chr17	56673133	56673333	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027933)	promoter-TSS (NM_027933)	8.0	NM_027933	71810.0	Mm.29608	NM_027933	ENSMUSG00000002372	Ranbp3	2610024N24Rik|AA408221	RAN binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-164833606-4	chr2	164833439	164833639	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008906)	promoter-TSS (NM_008906)	57.0	NM_001082974	415115.0	Mm.474586	NM_001082974	ENSMUSG00000039873	Neurl2	Neur2|Ozz|Ozz-E3	neuralized E3 ubiquitin protein ligase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-53315275-2	chr18	53315175	53315375	+	858.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029394, intron 1 of 6)	MTC|LTR|ERVL-MaLR	69613.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-108044452-4	chr13	108044344	108044544	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001048250)	promoter-TSS (NM_001048250)	-30.0	NM_001048250	75616.0	Mm.491164	NM_001048250	ENSMUSG00000071180	Smim15	2810008M24Rik	small integral membrane protein 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-19215896-4	chr3	19215789	19215989	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356295, intron 5 of 7)	intron (NM_001356295, intron 5 of 7)	27594.0	NM_001356295	67472.0	Mm.45125	NM_026182	ENSMUSG00000027601	Mtfr1	1300002C08Rik|1700080D04Rik|2810026O10Rik|4930579E05Rik|Chppr|Fam54a2	mitochondrial fission regulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-20638966-2	chr11	20638866	20639066	+	894.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038625, intron 1 of 1)	intron (NM_001038625, intron 1 of 1)	6989.0	NM_001038625	58172.0	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-11824257-1	chr16	11824157	11824357	+	658.0	f0_c57.idr	intron (NM_146067, intron 3 of 3)	intron (NM_146067, intron 3 of 3)	44555.0	NR_126430	73761.0	Mm.39183	NR_126430		4833415N18Rik	-	RIKEN cDNA 4833415N18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-103604397-4	chr2	103604280	103604480	+	990.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178890, intron 1 of 16)	intron (NM_178890, intron 1 of 16)	38070.0	NM_178890	99382.0	Mm.35850	NM_178890	ENSMUSG00000032724	Abtb2	AW539457|BPOZ-2	ankyrin repeat and BTB (POZ) domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-32638692-3	chr16	32638589	32638789	+	833.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5954.0	NM_001110147	51789.0	Mm.251115	NM_016788	ENSMUSG00000022791	Tnk2	Ack|Ack-1|Ack1|Cdgip|Pyk1	tyrosine kinase, non-receptor, 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-160192897-2	chr2	160192797	160192997	+	779.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	134597.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-74522774-4	chr11	74522711	74522911	+	964.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001015046, intron 2 of 24)	CpG	67347.0	NM_001015046	380711.0	Mm.425690	NM_001015046	ENSMUSG00000038807	Rap1gap2	AU067654|Garnl4|Gm1561|mKIAA1039	RAP1 GTPase activating protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-46820950-1	chr14	46820850	46821050	+	779.0	f1_c57bl6.idr	intron (NM_022023, intron 1 of 6)	(TC)n|Simple_repeat|Simple_repeat	1292.0	NM_022023	63985.0	Mm.87312	NM_022023	ENSMUSG00000062014	Gmfb	3110001H22Rik|3110001O16Rik|AI851627|C79176|D14Ertd630e	glia maturation factor, beta	protein-coding	0.685323770740487	1.10196276479852	0.917208955158324	0.381099265117731	0.369545693774174	1.44177580811575	0.391438381264838	0.382513385208058	-0.174248172176984	0.922098320850425	1
Merged-chr15-31419212-2	chr15	31419132	31419332	+	890.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	34457.0	NM_145852	252967.0	Mm.436668	NM_145852	ENSMUSG00000022236	Ropn1l	ASP|AV047578|Akapasp	ropporin 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-21392840-4	chr16	21392696	21392896	+	880.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30322.0	NM_001285893	209018.0	Mm.235683	NM_145948	ENSMUSG00000033653	Vps8	AI315068|AU040738|mKIAA0804	VPS8 CORVET complex subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-91494574-4	chr1	91494443	91494643	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028718)	promoter-TSS (NM_028718)	-125.0	NM_028718	74019.0	Mm.318430	NM_028718	ENSMUSG00000034292	Traf3ip1	3930402D05Rik|AU041749|MIP-T3	TRAF3 interacting protein 1	protein-coding	3.66392004841177	3.64886124651405	3.76051340525231	4.11797577169034	3.9548234548142	3.48733511219191	2.89489705588762	3.60466559314761	-0.390101682092738	0.450007064677669	0.916404393066723
Merged-chr19-21270076-2	chr19	21269976	21270176	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2202.0	NM_009551	22682.0	Mm.292405	NM_009551	ENSMUSG00000024750	Zfand5	2310057A04Rik|5830475F03Rik|AA415485|Za20d2|Zfp216	zinc finger, AN1-type domain 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139380566-4	chr5	139380464	139380664	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030258)	promoter-TSS (NM_030258)	-75.0	NM_030258	80290.0	Mm.270003	NM_030258	ENSMUSG00000044197	Gpr146	BC003323|D830046C22Rik|PGR8	G protein-coupled receptor 146	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-88679312-1	chr10	88679212	88679412	+	570.0	f0_c57.idr	intron (NM_011461, intron 3 of 5)	B4A|SINE|B4	3711.0	NM_011461	20728.0	Mm.21642	NM_011461	ENSMUSG00000004359	Spic	AU019198|C76795|Prf|Spi-C	Spi-C transcription factor (Spi-1/PU.1 related)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75541151-4	chr11	75541067	75541267	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199284, intron 2 of 13)	intron (NM_001199284, intron 2 of 13)	9055.0	NM_001199283	215113.0	Mm.11186	NM_173388	ENSMUSG00000038178	Slc43a2	7630402D21Rik|BC042513|Lat4	solute carrier family 43, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-113641639-2	chr6	113641539	113641739	+	614.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 1 of 11)	G-rich|Low_complexity|Low_complexity	3172.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-3490040-2	chr5	3489940	3490140	+	617.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 5 of 7)	L1_Mur3|LINE|L1	-53793.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-25902179-1	chr15	25902079	25902279	+	548.0	f1_c57bl6.idr	intron (NM_001034851, intron 3 of 8)	MLT1D|LTR|ERVL-MaLR	-31373.0	NM_001277318	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-119541947-4	chr4	119541836	119542036	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357177)	promoter-TSS (NM_001357177)	-400.0	NM_001357177	230700.0	Mm.259227	NM_172699	ENSMUSG00000032998	Foxj3	C330039G02Rik|Fhd6	forkhead box J3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-5664058-3	chr5	5663948	5664148	+	893.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001103156)	TTS (NM_001103156)	184.0	NM_172447	207686.0	Mm.319007	NM_172447	ENSMUSG00000040473	Cfap69	4921525K03|A330021E22Rik|AI427898	cilia and flagella associated protein 69	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-95291340-4	chr10	95291245	95291445	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001330138, intron 2 of 2)	intron (NM_001330138, intron 2 of 2)	32364.0	NM_001330138	12905.0	Mm.473739	NM_009950	ENSMUSG00000045867	Cradd	RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114706512-4	chr11	114706420	114706620	+	872.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053273, intron 6 of 13)	intron (NM_053273, intron 6 of 13)	-20892.0	NM_001034878	432611.0	Mm.212764	NM_001034878	ENSMUSG00000034706	Dnaic2	C030015H18Rik|Dnai2|Gm728|b2b3405Clo	dynein, axonemal, intermediate chain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-100198503-2	chr12	100198403	100198603	+	581.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009790)	promoter-TSS (NM_009790)	-932.0	NM_009790	12313.0	Mm.285993	NM_009790	ENSMUSG00000001175	Calm1	AI256814|AI327027|AI461935|AL024000|CaM|Calm|Cam1	calmodulin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-3516826-4	chr8	3516710	3516910	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359123)	promoter-TSS (NM_001359123)	-53.0	NM_001359124	50767.0	Mm.23085	NM_015801	ENSMUSG00000004565	Pnpla6	AI661849|MSws|Nte	patatin-like phospholipase domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91595956-2	chr16	91595856	91596056	+	553.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030018, intron 1 of 6)	intron (NM_030018, intron 1 of 6)	1724.0	NM_030018	77975.0	Mm.290341	NM_030018	ENSMUSG00000022964	Tmem50b	AU015466|AU019872|B230114J08Rik	transmembrane protein 50B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-8443719-4	chr15	8443598	8443798	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201232, intron 1 of 45)	CpG	765.0	NM_027707	71175.0	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	NIPBL cohesin loading factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-35119255-4	chr7	35119145	35119345	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001287523)	promoter-TSS (NM_001287523)	-48.0	NM_001287521	12606.0	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-60704767-2	chr10	60704667	60704867	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-8277.0	NM_023370	22295.0	Mm.440327	NM_023370	ENSMUSG00000012819	Cdh23	4930542A03Rik|USH1D|ahl|ahl1|bob|bus|mdfw|nmf112|nmf181|nmf252|sals|v	cadherin 23 (otocadherin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-108179490-4	chr12	108179364	108179564	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028262)	promoter-TSS (NM_028262)	-180.0	NM_028262	52690.0	Mm.159185	NM_028262	ENSMUSG00000056770	Setd3	2610102I01Rik|2610305M23Rik|6030490B17Rik|D12Ertd771e	SET domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-108065625-4	chr5	108065453	108065653	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253877)	promoter-TSS (NM_001253877)	-121.0	NM_001359088	17765.0	Mm.257149	NM_013827	ENSMUSG00000029267	Mtf2	9230112N11Rik|AA537621|C76717|M96|Pcl2	metal response element binding transcription factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-147751841-4	chr5	147751731	147751931	+	770.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-25843.0	NM_010228	14254.0	Mm.389712	NM_010228	ENSMUSG00000029648	Flt1	AI323757|Flt-1|VEGFR-1|VEGFR1|sFlt1	FMS-like tyrosine kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-100626795-4	chr12	100626683	100626883	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153587, intron 3 of 17)	L1M4b|LINE|L1	98337.0	NM_001330702	73086.0	Mm.220417	NM_153587	ENSMUSG00000021180	Rps6ka5	3110005L17Rik|6330404E13Rik|AI854034|MSK1|MSPK1|RLPK|RLSK|S6K-alpha-5	ribosomal protein S6 kinase, polypeptide 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-122558292-2	chr14	122558192	122558392	+	771.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_153443, intron 2 of 24)	intron (NR_153443, intron 2 of 24)	23964.0	NM_144844	110821.0	Mm.23876	NM_144844	ENSMUSG00000041650	Pcca	C79630	propionyl-Coenzyme A carboxylase, alpha polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-114817713-4	chr7	114817613	114817813	+	756.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173767, intron 7 of 12)	intron (NM_173767, intron 7 of 12)	71947.0	NM_173767	233752.0	Mm.83037	NM_173767	ENSMUSG00000048782	Insc	3830422K02Rik|C730020D23	INSC spindle orientation adaptor protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-144242001-4	chr1	144241895	144242095	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	7109.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-42169931-3	chr16	42169834	42170034	+	738.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361282, intron 10 of 10)	intron (NM_001361282, intron 10 of 10)	133535.0	NR_105858	102466172.0		NR_105858	ENSMUSG00000098300	Mir6540	Gm27780|mir-6540|mmu-mir-6540	microRNA 6540	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-105723583-3	chr5	105723485	105723685	+	914.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178701, intron 1 of 2)	intron (NM_178701, intron 1 of 2)	22775.0	NM_178701	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	2.34737066528154	3.54284268996582	2.61311301387027	2.33142941464312	5.2040042437498	5.03406214934672	2.80882487834985	5.02407725455226	2.74780370559399	6.35487395464371e-06	0.000315799217591723
Merged-chr2-102795245-3	chr2	102795138	102795338	+	803.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48478.0	NR_153853	102637542.0	Mm.371582	NR_153852		Gm13872	-	predicted gene 13872	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-142278243-4	chr3	142278115	142278315	+	926.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001190854, intron 7 of 12)	intron (NM_001190854, intron 7 of 12)	-108790.0	NM_001277216	12167.0	Mm.39089	NM_007560	ENSMUSG00000052430	Bmpr1b	AI385617|ALK-6|AV355320|Acvrlk6|Alk6|BMPR-1B|BMPR-IB|CFK-43a|SKR6	bone morphogenetic protein receptor, type 1B	protein-coding	5.9917278570054	6.34223381417217	6.42715423461247	6.15049996648112	3.06451969930234	3.7642846949797	3.12919403529055	1.78759694346866	-3.89166239425483	4.92652980269117e-22	7.38856307158608e-19
Merged-chr1-149917300-3	chr1	149917189	149917389	+	838.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008869, intron 3 of 17)	intron (NM_008869, intron 3 of 17)	5150.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-75726531-3	chr12	75726459	75726659	+	954.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030750, intron 1 of 2)	intron (NM_030750, intron 1 of 2)	9170.0	NM_030750	81535.0	Mm.280199	NM_030750	ENSMUSG00000021054	Sgpp1	AI463453|SPP|SPP1|Spph1	sphingosine-1-phosphate phosphatase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-79095832-4	chr17	79095756	79095956	+	882.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16D|LTR|ERVL	43950.0	NM_001316729	70536.0	Mm.293870	NM_027455	ENSMUSG00000024084	Qpct	5730422A13Rik	glutaminyl-peptide cyclotransferase (glutaminyl cyclase)	protein-coding	1.75090034942092	2.85848630796817	3.34710571637896	2.65948068831629	3.88649517661578	4.82347768556604	3.78238146571131	3.91490801359823	2.12819593591903	0.000469827009808053	0.0106091301072968
Merged-chr14-70056334-4	chr14	70056299	70056499	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028560, intron 6 of 6)	intron (NM_028560, intron 6 of 6)	-21046.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97487935-4	chr6	97487826	97488026	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346637)	promoter-TSS (NM_001346637)	-106.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-21048187-4	chr11	21048102	21048302	+	696.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43122.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-73276284-2	chr10	73276184	73276384	+	970.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-189579.0	NR_040646	327768.0	Mm.417745	NR_040646	ENSMUSG00000111994	A330049N07Rik	-	RIKEN cDNA A330049N07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-45678305-2	chr17	45678220	45678420	+	716.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_198167, intron 4 of 23)	intron (NM_198167, intron 4 of 23)	7898.0	NM_198167	224807.0	Mm.157904	NM_198167	ENSMUSG00000036026	Tmem63b	BC026370	transmembrane protein 63b	protein-coding	-0.859014316329988	-0.97615540377703	-0.987108606490322	-0.988918741934041	-0.855485029862454	-0.973766223064501	-0.81708355025569	-0.700054124715886	1.69179355651956	0.540407783569672	1
Merged-chr9-13495742-3	chr9	13495646	13495846	+	898.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	64385.0	NR_028271	18689.0	Mm.41972	NM_008835	ENSMUSG00000031802	Phxr4	Sp5	per-hexamer repeat gene 4	ncRNA	0.969484945349743	1.13486092435433	0.495254510291395	0.488749784810338	0.763573662679604	1.02111853861014	0.975707126771698	0.48988818611966	0.101363266794377	0.951295707021541	1
Merged-chr6-114872953-1	chr6	114872853	114873053	+	797.0	f0_balb.idr	intron (NM_001356371, intron 3 of 5)	intron (NM_001356371, intron 3 of 5)	48868.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-25427088-4	chr2	25426985	25427185	+	973.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_013524)	TTS (NM_013524)	-1589.0	NM_007379	11305.0	Mm.2210	NM_007379	ENSMUSG00000026944	Abca2	AI413825|Abc2|D2H0S1474E|mKIAA1062	ATP-binding cassette, sub-family A (ABC1), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-88517749-4	chr17	88517643	88517843	+	969.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	-12381.0	NM_028658	73825.0	Mm.271817	NM_028658	ENSMUSG00000034709	Ppp1r21	1110018J12Rik|AI426045|AW550781|Ccdc128|Klraq1	protein phosphatase 1, regulatory subunit 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-100199023-3	chr13	100198979	100199179	+	797.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001126182, intron 1 of 15)	Lx9|LINE|L1	3043.0	NM_001126182	17948.0	Mm.89961	NM_010872	ENSMUSG00000078945	Naip2	Birc1b|Naip-rs6	NLR family, apoptosis inhibitory protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-24971433-2	chr13	24971333	24971533	+	602.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_008156, exon 14 of 26)	exon (NM_008156, exon 14 of 26)	28281.0	NM_008156	14756.0	Mm.291831	NM_008156	ENSMUSG00000021340	Gpld1	6330541J12Rik|AW546131	glycosylphosphatidylinositol specific phospholipase D1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-113664512-3	chr6	113664402	113664602	+	896.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 2 of 11)	intron (NM_001113553, intron 2 of 11)	26035.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-52174793-4	chr9	52174691	52174891	+	855.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6680.0	NM_001162921	244871.0	Mm.295686	NM_001162921	ENSMUSG00000035164	Zc3h12c	A230108E06|C230027N18Rik|mKIAA1726	zinc finger CCCH type containing 12C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-103011323-2	chr14	103011223	103011423	+	692.833374	f1_balb.idr|f1_c57bl6.idr	intron (NR_045657, intron 2 of 2)	intron (NR_045657, intron 2 of 2)	22480.0	NR_045657	71264.0	Mm.399572	NR_045657	ENSMUSG00000114980	4933432I03Rik	-	RIKEN cDNA 4933432I03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-66150150-1	chr5	66150050	66150250	+	648.0	f0_c57.idr	intron (NM_001127382, intron 2 of 7)	intron (NM_001127382, intron 2 of 7)	828.0	NM_001291226	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	2.6111621805614	1.26130875521763	2.00354878241046	2.18530653786605	2.69247129661166	1.2676949266632	2.01955499150441	1.9564071842047	-0.0387850327745448	0.970629621164098	0.998431161219273
Merged-chr9-51009775-2	chr9	51009675	51009875	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178710)	promoter-TSS (NM_178710)	-702.0	NM_178710	235344.0	Mm.104932	NM_178710	ENSMUSG00000037112	Sik2	G630080D20Rik|Snf1lk2	salt inducible kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53051482-2	chr4	53051382	53051582	+	909.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 34 of 49)	B3|SINE|B2	39602.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70752527-4	chr8	70752411	70752611	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2168.0	NM_001328047	19339.0	Mm.5083	NM_009001	ENSMUSG00000031840	Rab3a	-	RAB3A, member RAS oncogene family	protein-coding	3.80702549578988	4.18280600165262	3.87400946503277	3.48682825113935	3.88734977066306	2.17782512934876	3.44188633855285	3.72324697745739	-0.575092903700238	0.308860779313287	0.809295017856989
Merged-chr7-67245269-2	chr7	67245169	67245369	+	555.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357324, intron 8 of 11)	intron (NM_001357324, intron 8 of 11)	22653.0	NM_001191051	75099.0	Mm.121691	NM_175215	ENSMUSG00000043831	Lysmd4	4930506D23Rik	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-76418700-2	chr14	76418600	76418800	+	782.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001310646, exon 3 of 5)	exon (NM_001310646, exon 3 of 5)	2879.0	NM_207652	21807.0	Mm.153272	NM_009366	ENSMUSG00000022010	Tsc22d1	AA589566|AW105905|Egr5|TSC-22|Tgfb1i4|Tsc|Tsc22	TSC22 domain family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78406686-4	chr15	78406636	78406836	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162493)	promoter-TSS (NM_001162493)	24.0	NM_001162493	246221.0	Mm.294215	NM_138670	ENSMUSG00000071711	Mpst	Mst	mercaptopyruvate sulfurtransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-20473600-2	chr15	20473500	20473700	+	591.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	193150.0	NM_022816	64833.0	Mm.352763	NM_022816	ENSMUSG00000047565	Acot10	Acate3|MT-ACT48|p48	acyl-CoA thioesterase 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-34773745-4	chr11	34773560	34773760	+	997.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033374, intron 1 of 51)	intron (NM_033374, intron 1 of 51)	10245.0	NM_033374	94176.0	Mm.380679	NM_033374	ENSMUSG00000020143	Dock2	AI662014|AW122239|CED-5|Hch|MBC	dedicator of cyto-kinesis 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-128618743-4	chr4	128618658	128618858	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_205823)	promoter-TSS (NM_205823)	-139.0	NM_205823	384059.0	Mm.331901	NM_205823	ENSMUSG00000062545	Tlr12	Gm1365|Tlr11	toll-like receptor 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-73220945-2	chr6	73220845	73221045	+	804.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164669, intron 1 of 76)	B4A|SINE|B4	686.0	NM_001164669	330355.0	Mm.333166	NM_001164669	ENSMUSG00000052861	Dnah6	9830168K20|A730004I20Rik|Dnahc6|mKIAA1697|mdhc6	dynein, axonemal, heavy chain 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5589139-4	chr17	5589024	5589224	+	960.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	96524.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-87441448-4	chr12	87441367	87441567	+	899.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001102565, intron 1 of 5)	intron (NM_001102565, intron 1 of 5)	2372.0	NM_001102565	211064.0	Mm.486235	NM_001102565	ENSMUSG00000079036	Alkbh1	2700073G19Rik|Abh|Alkbh|alkB|hABH	alkB homolog 1, histone H2A dioxygenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5232470-3	chr17	5232372	5232572	+	974.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 4 of 19)	intron (NM_001085355, intron 4 of 19)	186295.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-17308523-2	chr3	17308423	17308623	+	738.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2A1|LINE|L1	-481398.0	NR_033490	70441.0	Mm.458192	NR_033490	ENSMUSG00000100252	Mir124-2hg	100040120|2610100L16Rik|6430547I21Rik|A930005K07Rik|AW125202|Gm2612	Mir124-2 host gene (non-protein coding)	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-45949306-4	chr4	45949193	45949393	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198660, intron 36 of 37)	intron (NM_198660, intron 36 of 37)	-16042.0	NM_001290475	100121.0	Mm.275413	NM_146142	ENSMUSG00000035517	Tdrd7	5730495N10Rik|AI447470|PCTAIRE2BP	tudor domain containing 7	protein-coding	5.73699528179868	5.69128175844076	5.31434580828174	5.65124271506029	5.71929566172913	6.16208246479901	6.07918417203642	5.57834892100653	0.32281544009791	0.210303391791243	0.69949048545273
Merged-chr19-60579767-1	chr19	60579667	60579867	+	674.0	f1_c57bl6.idr	intron (NM_001172097, intron 1 of 6)	intron (NM_001172097, intron 1 of 6)	1256.0	NM_001172097	78832.0	Mm.259026	NM_030197	ENSMUSG00000033417	Cacul1	2700078E11Rik|2810417M16Rik|9830127L17Rik|AI450346|D130033C15Rik	CDK2 associated, cullin domain 1	protein-coding	2.13732286526455	1.56736885788549	1.81932990283179	2.25998293771033	1.05106739260877	1.12153588699412	1.69227507183919	2.10099815056879	-1.15561171945348	0.313608023982846	0.81522774665592
Merged-chr7-90216708-4	chr7	90216601	90216801	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48731.0	NM_029256	75338.0	Mm.487222	NM_029256	ENSMUSG00000030617	Ccdc83	4930549K11Rik|4930554C01Rik|4932423M01Rik	coiled-coil domain containing 83	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-25262642-2	chr15	25262605	25262805	+	585.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	151059.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120563049-2	chr8	120562949	120563149	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145896, intron 3 of 15)	intron (NM_001145896, intron 3 of 15)	24353.0	NR_106159	102466849.0		NR_106159	ENSMUSG00000098280	Mir7687	Gm27573|mmu-mir-7687	microRNA 7687	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-146127011-4	chr6	146126848	146127048	+	945.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019923, intron 55 of 56)	intron (NM_019923, intron 55 of 56)	192826.0	NM_010656	16651.0	Mm.49689	NM_010656	ENSMUSG00000030255	Sspn	Krag	sarcospan	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-59132455-3	chr2	59132359	59132559	+	857.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362394, intron 1 of 13)	RLTR13B4|LTR|ERVK	28224.0	NM_001362393	227933.0	Mm.330234	NM_177650	ENSMUSG00000036641	Ccdc148	5830402J09|Gm38473	coiled-coil domain containing 148	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-84584439-4	chr18	84584329	84584529	+	762.020813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033341, intron 1 of 8)	intron (NM_001033341, intron 1 of 8)	5075.0	NM_001033341	240476.0	Mm.329575	NM_001033341	ENSMUSG00000048410	Zfp407	6430585N13Rik|Gm333|Gm334|Gm948|ZNF407	zinc finger protein 407	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114815809-2	chr11	114815709	114815909	+	729.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16885.0	NM_181749	217302.0	Mm.269127	NM_181749	ENSMUSG00000034677	Gpr142	PGR2	G protein-coupled receptor 142	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-108151493-4	chr3	108151410	108151610	+	943.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001305461, exon 2 of 3)	5' UTR (NM_001305461, exon 2 of 3)	3422.0	NM_001305461	229714.0	Mm.73666	NM_175470	ENSMUSG00000046793	Gpr61	-	G protein-coupled receptor 61	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116143972-2	chr11	116143872	116144072	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172571, intron 30 of 30)	intron (NM_172571, intron 30 of 30)	-5104.0	NM_024177	60441.0	Mm.29974	NM_024177	ENSMUSG00000020775	Mrpl38	1110036N21Rik|4733401F03Rik|MRP-L3|R75240|Rpml3	mitochondrial ribosomal protein L38	protein-coding	0.749480781364169	0.509134353082051	1.06158343157606	0.795411373866156	0.756385683449484	0.510816542045113	1.07287736146887	0.800182749893772	0.0380366554070634	0.980633741704107	1
Merged-chr7-80159051-3	chr7	80158959	80159159	+	619.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27782.0	NM_013659	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	0.188209109104993	0.58802322888407	0.203406066810349	0.866786823654832	0.347950483600298	0.21238210863294	1.02334377934005	0.198713950756056	0.0362875777551653	0.985180349990259	1
Merged-chr11-3539333-4	chr11	3539255	3539455	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001284429)	promoter-TSS (NM_001284429)	-63.0	NM_001284428	29856.0	Mm.188516	NM_013870	ENSMUSG00000020439	Smtn	smsmo	smoothelin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-114281854-4	chr7	114281732	114281932	+	956.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-5716.0	NM_011965	26440.0	Mm.121265	NM_011965	ENSMUSG00000030751	Psma1	C2|HC2|Pros-30|alpha-type	proteasome (prosome, macropain) subunit, alpha type 1	protein-coding	2.97985420191747	3.49416493496037	3.13425916305896	2.95441619793224	3.00398943817157	2.8042871770138	3.15803511006375	3.06383407916106	-0.245079498976628	0.687865890278949	0.996533206832645
Merged-chr13-20092536-4	chr13	20092442	20092642	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	2035.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-44325838-4	chr10	44325740	44325940	+	916.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001314013, intron 5 of 6)	MTE2b|LTR|ERVL-MaLR	-33836.0	NR_035450	100316688.0		NR_035450	ENSMUSG00000089260	Mir1929	mir-1929|mmu-mir-1929	microRNA 1929	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-7980836-4	chr5	7980741	7980941	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_054098, exon 5 of 5)	3' UTR (NM_054098, exon 5 of 5)	20369.0	NM_054098	117167.0	Mm.31403	NM_054098	ENSMUSG00000012428	Steap4	1110021O17Rik|AI481214|Tiarp|Tnfaip9	STEAP family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-137302749-4	chr6	137302657	137302857	+	972.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011216, intron 1 of 26)	intron (NM_011216, intron 1 of 26)	50458.0	NM_001164401	19277.0	Mm.186361	NM_011216	ENSMUSG00000030223	Ptpro	D28|GLEPP1|PTPBK|PTPROt|PTPU2|PTPoc|PTPphi|Ptpn15|R-PTP-O	protein tyrosine phosphatase, receptor type, O	protein-coding	4.16060170245977	4.81482999708552	4.15370626073255	3.83609935634424	4.24057132011355	4.92950096368623	4.11984164302155	4.39185268504939	0.218289810832601	0.604885104132174	0.974323567445336
Merged-chr5-55834278-2	chr5	55834135	55834335	+	649.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2B2|LINE|L1	1484243.0	NR_038045	330086.0	Mm.254449	NM_177871	ENSMUSG00000105912	Gm10440	D130065D13	predicted gene 10440	ncRNA	0.86931976474873	0.401855528061258	0.981302291162648	0.387977773605452	0.379374175060951	0.403613043580021	0.992955318631131	0.94728078534302	0.141783292615105	0.938440842091259	1
Merged-chr16-76976069-2	chr16	76975969	76976169	+	584.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	34812.0	NR_040573	76601.0	Mm.396217	NR_040573	ENSMUSG00000100857	1700041M19Rik	-	RIKEN cDNA 1700041M19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-9380932-4	chr13	9380841	9381041	+	921.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081426, intron 1 of 36)	intron (NM_001081426, intron 1 of 36)	104416.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-127277927-2	chr3	127277827	127278027	+	585.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001327938, intron 1 of 47)	Lx8|LINE|L1	116622.0	NR_105029	100862268.0	Mm.444603	NR_105029	ENSMUSG00000097456	LOC100862268	-	uncharacterized LOC100862268	ncRNA	0.177099577407435	0.418444055497555	1.03211174185102	0.187666638689955	0.178680997339315	0.424049956780383	1.04674725835444	0.188770139880651	0.0407218697064163	0.983346829579543	1
Merged-chr1-127270647-5	chr1	127270535	127270735	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145128, intron 2 of 17)	C-rich|Low_complexity|Low_complexity	65649.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34293726-4	chr17	34293588	34293788	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5917.0	NM_010378	14960.0	Mm.235338	NM_010378	ENSMUSG00000036594	H2-Aa	Aalpha|H-2Aa|H2Aa|I-Aalpha|IAalpha|Ia-1|Ia1	histocompatibility 2, class II antigen A, alpha	protein-coding	5.65644488169329	4.89838402023763	4.1585830874489	5.24893885292395	5.53936196163414	5.44658480359796	5.80166241043425	5.1147893423748	0.450915707891231	0.191406032004403	0.66966064502007
Merged-chr15-73061138-4	chr15	73061034	73061234	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_180662)	promoter-TSS (NM_180662)	70.0	NM_001164641	76510.0	Mm.158902	NM_029640	ENSMUSG00000047921	Trappc9	1810044A24Rik|2900005P22Rik|4632408O18Rik|Ibp|Nibp|TRS130|mKIAA1882	trafficking protein particle complex 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-177797673-2	chr1	177797573	177797773	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1A|DNA|hAT-Charlie	-1164.0	NM_007422	11566.0	Mm.338021	NM_007422	ENSMUSG00000015961	Adss	AI314886|AS|Adss2	adenylosuccinate synthetase, non muscle	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-78674848-4	chr1	78674749	78674949	+	906.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028817, intron 2 of 15)	intron (NM_028817, intron 2 of 15)	16409.0	NM_001136226	195434.0	Mm.276016	NM_001001981	ENSMUSG00000079470	Utp14b	4932411L21Rik|jsd	UTP14B small subunit processome component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-69584656-2	chr18	69584556	69584756	+	804.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 8 of 19)	intron (NM_001361128, intron 8 of 19)	238496.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-40625431-2	chr12	40625331	40625531	+	561.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 3 of 52)	intron (NM_172803, intron 3 of 52)	179378.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141864742-1	chr4	141864642	141864842	+	543.0	f1_c57bl6.idr	intron (NM_025994, intron 1 of 3)	MTD|LTR|ERVL-MaLR	10178.0	NM_025994	27984.0	Mm.395598	NM_025994	ENSMUSG00000040659	Efhd2	2600015J22Rik|AA408606|D4Wsu27e	EF hand domain containing 2	protein-coding	-0.814646203414956	-0.948132458442233	-0.260580320090758	-0.961569116139344	-0.964955961651228	-0.945393490738569	-0.957910421812185	-0.96115068189259	-3.02226751932349	0.31744843379996	1
Merged-chr17-23925317-3	chr17	23925232	23925432	+	988.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7874.0	NM_001077633	620253.0	Mm.390964	NM_001077633	ENSMUSG00000057417	Dcpp3	Dcpp-3|EG620253|SPT-3	demilune cell and parotid protein 3	protein-coding	3.5394999367525	1.7177635956323	3.42473014864534	2.86366530832468	3.62092031590638	2.65800756182452	3.85012044814084	3.42134074211603	0.62937297937638	0.362304614747264	0.8580597646541
Merged-chr11-101581437-7	chr11	101581311	101581511	+	946.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144830)	promoter-TSS (NM_144830)	-831.0	NM_001359326	217203.0	Mm.280559	NM_144830	ENSMUSG00000034947	Tmem106a	0610008L10Rik|AI043106|BC022145	transmembrane protein 106A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-24586220-2	chr1	24586120	24586320	+	726.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007733, intron 1 of 50)	intron (NM_007733, intron 1 of 50)	1217.0	NM_007733	12823.0	Mm.329196	NM_007733	ENSMUSG00000026141	Col19a1	-	collagen, type XIX, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-87360586-4	chr3	87360474	87360674	+	951.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009690, intron 1 of 5)	intron (NM_009690, intron 1 of 5)	2693.0	NM_009690	11801.0	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	4.46612526938685	4.01536377692873	3.95348219411829	4.87800751789437	3.80475602853681	4.18723442471915	2.63899175490849	4.5051674781947	-0.585109914914097	0.247799839584627	0.747080687713142
Merged-chr8-124922207-4	chr8	124922137	124922337	+	920.44165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053207, intron 1 of 4)	intron (NM_053207, intron 1 of 4)	24351.0	NM_001111141	244666.0	Mm.482915	NM_001111141	ENSMUSG00000031986	Sprtn	Gm505	SprT-like N-terminal domain	protein-coding	2.9138769457237	4.34802739184214	2.93761454069403	2.84845638650655	3.37275230350853	4.11325338988354	3.92605299574663	3.20124106496628	0.402555323511792	0.50774796185276	0.943374049681311
Merged-chr8-60859766-1	chr8	60859666	60859866	+	789.0	f0_balb.idr	Intergenic	Intergenic	-30627.0	NM_028299	72612.0	Mm.25263	NM_028299	ENSMUSG00000038005	Hpf1	2700029M09Rik|C230006B22Rik|C4orf27	histone PARylation factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-14537311-2	chr10	14537205	14537405	+	793.25	f0_balb.idr|f0_c57.idr	intron (NM_001002268, intron 1 of 24)	RLTR40|LTR|ERVK	7731.0	NM_001002268	215798.0	Mm.440142	NM_001002268	ENSMUSG00000039116	Adgrg6	1190004A11Rik|AI449247|AW045736|DREG|Gm222|Gpr126	adhesion G protein-coupled receptor G6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-44618204-1	chr15	44618104	44618304	+	574.0	f0_balb.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-1023.0	NM_001357690	55960.0	Mm.287896	NM_019480	ENSMUSG00000022339	Ebag9	AI835379|Rcas1	estrogen receptor-binding fragment-associated gene 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-79056285-4	chr2	79056184	79056384	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	186606.0	NR_151457	22193.0	Mm.1485	NM_009454	ENSMUSG00000027011	Ube2e3	Ubce4|ubcM2	ubiquitin-conjugating enzyme E2E 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-35949039-1	chr13	35948939	35949139	+	741.0	f1_c57bl6.idr	Intergenic	Intergenic	-18867.0	NM_029628	76487.0	Mm.44745	NM_029628	ENSMUSG00000050423	Ppp1r3g	1600032L17Rik	protein phosphatase 1, regulatory (inhibitor) subunit 3G	protein-coding	1.73138649249733	1.95449877118855	1.117297392771	2.69189627047261	1.97076205393016	1.63247915834462	1.12319111456788	2.27259379704725	-0.479679114640218	0.670162846831723	0.99359666617512
Merged-chr19-4282158-2	chr19	4282058	4282258	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026720, intron 2 of 14)	intron (NM_026720, intron 2 of 14)	979.0	NM_026720	68423.0	Mm.23642	NM_026720	ENSMUSG00000005986	Ankrd13d	0710001P18Rik|AI430801	ankyrin repeat domain 13 family, member D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-29828992-4	chr6	29828915	29829115	+	759.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001171000, intron 1 of 16)	intron (NM_001171000, intron 1 of 16)	-24726.0	NM_001347084	74340.0	Mm.210899	NM_021414	ENSMUSG00000029772	Ahcyl2	4631427C17Rik|AI227036|Adohcyase3|mKIAA0828	S-adenosylhomocysteine hydrolase-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-66893078-1	chr6	66892978	66893178	+	613.0	f0_balb.idr	Intergenic	Intergenic	-3319.0	NM_001177559	14701.0	Mm.234342	NM_025278	ENSMUSG00000036402	Gng12	2010305F15Rik|AA536815|AI115529|AI314170|AI842738	guanine nucleotide binding protein (G protein), gamma 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-102941088-2	chr2	102940945	102941145	+	761.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39380.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	0.92737570153555	1.94218171388304	0.978011990847822	1.80978707662482	1.32279886873254	1.27225808019355	2.0010831830804	2.49408214801284	1.06736461512905	0.382079202777939	0.873396688145393
Merged-chr3-27687227-2	chr3	27687127	27687327	+	614.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356953, intron 1 of 26)	intron (NM_001356953, intron 1 of 26)	23225.0	NM_001356953	72007.0	Mm.38832	NM_173182	ENSMUSG00000039286	Fndc3b	1600019O04Rik|AW550168|Fad104|mKIAA4164	fibronectin type III domain containing 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-101355166-4	chr4	101355087	101355287	+	976.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040640, intron 1 of 3)	intron (NR_040640, intron 1 of 3)	1061.0	NR_040708	77866.0	Mm.137053	NR_040708	ENSMUSG00000086782	E130102H24Rik	-	RIKEN cDNA E130102H24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-150648122-4	chr2	150648024	150648224	+	966.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080575, intron 2 of 13)	B3A|SINE|B2	-19370.0	NR_040331	109344.0	Mm.440012	NR_040331	ENSMUSG00000087406	E130215H24Rik	-	RIKEN cDNA E130215H24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-112866675-4	chr12	112866571	112866771	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5755.0	NM_019925	56696.0	Mm.20455	NM_019925	ENSMUSG00000021298	Gpr132	G2a	G protein-coupled receptor 132	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-54614414-1	chr13	54614314	54614514	+	574.0	f1_c57bl6.idr	Intergenic	B3|SINE|B2	-3041.0	NM_001347512	74325.0	Mm.290026	NM_028870	ENSMUSG00000047547	Cltb	2310046E19Rik|lcb	clathrin, light polypeptide (Lcb)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171114074-4	chr1	171113987	171114187	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7574.0	NM_001081275	75472.0	Mm.32760	NM_029301	ENSMUSG00000026649	Cfap126	1700009P17Rik|AV282292|Flattop|Fltp	cilia and flagella associated protein 126	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-91738057-2	chr6	91737957	91738157	+	815.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009320, intron 6 of 14)	intron (NM_009320, intron 6 of 14)	53990.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-80759180-2	chr12	80759080	80759280	+	694.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001008423, exon 2 of 2)	exon (NM_001008423, exon 2 of 2)	1535.0	NM_001008423	380768.0	Mm.29367	NM_001008423	ENSMUSG00000062961	Ccdc177	Gm1568	coiled-coil domain containing 177	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-110786850-3	chr7	110786747	110786947	+	584.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009667, intron 2 of 14)	intron (NM_009667, intron 2 of 14)	14243.0	NM_009667	11717.0	Mm.3238	NM_009667	ENSMUSG00000005686	Ampd3	-	adenosine monophosphate deaminase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-51089518-4	chr2	51089470	51089670	+	985.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	59541.0	NM_028810	74194.0	Mm.46497	NM_028810	ENSMUSG00000017144	Rnd3	2610017M01Rik|AI661404|Arhe|Rhoe	Rho family GTPase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-7925350-1	chr15	7925250	7925450	+	540.0	f1_balb.idr	intron (NM_001081402, intron 10 of 17)	intron (NM_001081402, intron 10 of 17)	109800.0	NM_001301357	14573.0	Mm.4679	NM_010275	ENSMUSG00000022144	Gdnf	AI385739|ATF	glial cell line derived neurotrophic factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-33359243-2	chr15	33359143	33359343	+	601.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_176073, intron 4 of 7)	Lx6|LINE|L1	46696.0	NR_033608	73486.0	Mm.483393	NM_028551	ENSMUSG00000058101	1700084J12Rik	-	ribosomal protein L7-like 1 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-137942015-1	chr4	137941915	137942115	+	855.0	f1_balb.idr	intron (NM_199307, intron 9 of 19)	Lx8|LINE|L1	-51441.0	NM_001256198	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	-0.183682976200696	-0.166885695651277	-0.17236609135238	0.73624133345652	0.222738219618708	0.043038163626495	-0.171155513564595	-0.175866981118962	-1.03926653835058	0.655966565776428	1
Merged-chr4-62275037-4	chr4	62274924	62275124	+	861.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-11405.0	NM_025286	20530.0	Mm.292539	NM_025286	ENSMUSG00000066152	Slc31a2	AI604396|CTR2	solute carrier family 31, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-8974004-4	chr12	8973981	8974181	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159527)	promoter-TSS (NM_001159527)	80.0	NM_172470	74682.0	Mm.87389	NM_172470	ENSMUSG00000066643	Wdr35	4930459M12Rik|4931430C06|mKIAA1336	WD repeat domain 35	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-58463178-4	chr4	58463087	58463287	+	989.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172989, intron 3 of 3)	intron (NM_172989, intron 3 of 3)	-22089.0	NR_037278	100526502.0		NR_037278	ENSMUSG00000093293	Mir3095	mir-3095|mmu-mir-3095	microRNA 3095	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-8778871-2	chr16	8778771	8778971	+	613.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR19-int|LTR|ERVK	-40529.0	NM_001003918	252870.0	Mm.295330	NM_001003918	ENSMUSG00000022710	Usp7	2210010O09Rik|AA409944|AA617399|AU019296|AW548146|C80752|Hausp	ubiquitin specific peptidase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117209321-4	chr8	117209218	117209418	+	988.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47701.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-27183871-5	chr3	27183735	27183935	+	996.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 1 of 4)	intron (NM_178772, intron 1 of 4)	831.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-24466233-2	chr13	24466133	24466333	+	613.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111110, intron 14 of 16)	intron (NM_001111110, intron 14 of 16)	51111.0	NM_001284520	12763.0	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-30627110-1	chr14	30627010	30627210	+	553.0	f0_balb.idr	promoter-TSS (NM_011103)	promoter-TSS (NM_011103)	-902.0	NM_011103	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-143119411-4	chr7	143119262	143119462	+	901.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008434, intron 1 of 15)	intron (NM_008434, intron 1 of 15)	12108.0	NM_008434	16535.0	Mm.439769	NM_008434	ENSMUSG00000009545	Kcnq1	AW559127|KVLQT1|Kcna9	potassium voltage-gated channel, subfamily Q, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-143150789-3	chr6	143150689	143150889	+	702.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153819, intron 2 of 8)	intron (NR_153819, intron 2 of 8)	3142.0	NR_153819	102633311.0	Mm.333484	NR_153819		Gm31108	Gm31169	predicted gene, 31108	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-111171363-3	chr10	111171241	111171441	+	855.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003717, intron 1 of 22)	intron (NM_001003717, intron 1 of 22)	6539.0	NM_175489	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-132371699-2	chr1	132371599	132371799	+	806.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_178874, intron 2 of 4)	intron (NM_178874, intron 2 of 4)	-3751.0	NM_001311108	68875.0	Mm.273785	NM_178874	ENSMUSG00000042066	Tmcc2	1110063G11Rik	transmembrane and coiled-coil domains 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-98861052-2	chr2	98860915	98861115	+	590.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3C|LINE|L1	1393358.0	NM_178725	241568.0	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	-1.43172712806865	-1.3992492906874	-1.40907085678131	-1.41713858359971	-0.932192548427885	-1.39712091634321	-1.40684746950024	-1.41569446435649	2.19283191591698	0.528233640655333	1
Merged-chr1-60027345-2	chr1	60027245	60027445	+	582.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357296, intron 2 of 10)	intron (NM_001357296, intron 2 of 10)	15777.0	NM_001357296	70375.0	Mm.17834	NM_027407	ENSMUSG00000026018	Ica1l	1700030B17Rik|Als2cr15|b2b3465Clo	islet cell autoantigen 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107526787-3	chr9	107526667	107526867	+	972.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_020263, exon 36 of 39)	exon (NM_020263, exon 36 of 39)	-7178.0	NM_019704	56395.0	Mm.260153	NM_019704	ENSMUSG00000010045	Tmem115	C78915|Pl6|Pp6	transmembrane protein 115	protein-coding	2.35810925149988	1.56092259522621	2.53676027370241	1.93242607588298	1.736001199535	1.56867396673923	2.1218752987918	1.94171756748204	-0.861393707121582	0.373952384732974	0.867047290394143
Merged-chr8-128358743-12	chr8	128358687	128358887	+	853.272217	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008737)	promoter-TSS (NM_008737)	-286.0	NM_001358959	18186.0	Mm.271745	NM_008737	ENSMUSG00000025810	Nrp1	C530029I03|NP-1|NPN-1|Npn1|Nrp	neuropilin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-170856119-2	chr1	170856019	170856219	+	605.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081304, intron 1 of 15)	intron (NM_001081304, intron 1 of 15)	11652.0	NM_001081304	226641.0	Mm.377046	NM_001081304	ENSMUSG00000026663	Atf6	9130025P16Rik|9630036G24|AA789574|Atf6alpha|ESTM49	activating transcription factor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75194645-2	chr11	75194545	75194745	+	558.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177708, intron 1 of 1)	CpG	652.0	NM_177708	237847.0	Mm.82661	NM_177708	ENSMUSG00000045287	Rtn4rl1	Ngr3|Ngrh2|Ngrl2	reticulon 4 receptor-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-75553194-2	chr17	75553094	75553294	+	715.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER5|LTR|ERV1	-1248.0	NM_001357860	72722.0	Mm.24641	NM_133747	ENSMUSG00000002017	Fam98a	2810405J04Rik|AL024114	family with sequence similarity 98, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-74401492-2	chr1	74401392	74401592	+	584.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7182.0	NR_029743	387219.0		NR_029743	ENSMUSG00000065468	Mir26b	Mirn26b|mir-26b|mmu-mir-26b	microRNA 26b	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-8612230-3	chr11	8612177	8612377	+	645.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 2 of 30)	MLT1A0|LTR|ERVL-MaLR	52258.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-55888795-2	chr7	55888695	55888895	+	974.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011370, intron 11 of 30)	intron (NM_011370, intron 11 of 30)	46724.0	NM_001164661	20430.0	Mm.37249	NM_011370	ENSMUSG00000030447	Cyfip1	E030028J09Rik|P140SRA-1|P140sra1|Shyc|Sra-1|Sra1|l(7)1Rl|l71Rl|l7Rl1|mKIAA0068|pl-1	cytoplasmic FMR1 interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-74950755-2	chr15	74950651	74950851	+	611.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4300.0	NM_001164039	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	0.892895711454429	1.33150672109584	0.58390823725296	0.573388836604264	1.03653847900255	1.85912284999816	0.586882605704033	0.957071613960969	1.29593623589281	0.396648250347249	0.883358600789196
Merged-chr6-57770635-4	chr6	57770524	57770724	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146168, intron 3 of 4)	intron (NM_146168, intron 3 of 4)	54501.0	NM_146168	232023.0	Mm.24642	NM_146168	ENSMUSG00000037788	Vopp1	AW146242|Ecop	vesicular, overexpressed in cancer, prosurvival protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-24450641-2	chr7	24450541	24450741	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4959.0	NM_199013	210145.0	Mm.33811	NM_199013	ENSMUSG00000062028	Irgc1	F630044M05Rik|Gm1102|Gm474|Ifgge|Iigp5|Irgc	immunity-related GTPase family, cinema 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-27109672-4	chr9	27109565	27109765	+	977.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023277, intron 1 of 8)	intron (NM_023277, intron 1 of 8)	45756.0	NM_023277	83964.0	Mm.28770	NM_023277	ENSMUSG00000031990	Jam3	1110002N23Rik|JAM-3|JAM-C|Jcam3	junction adhesion molecule 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-47777373-2	chr9	47777273	47777473	+	754.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	40835.0	NR_046048	100038460.0	Mm.447649	NR_046048		Gm10677	-	predicted gene 10677	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-155490032-2	chr4	155489932	155490132	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1329.0	NM_001160017	14688.0	Mm.2344	NM_008142	ENSMUSG00000029064	Gnb1	AA409223|C77571|Gnb-1	guanine nucleotide binding protein (G protein), beta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-89407505-2	chr15	89407405	89407605	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162880, intron 1 of 2)	ORR1C2-int|LTR|ERVL-MaLR	2758.0	NM_001162882	75459.0	Mm.45462	NM_001162880	ENSMUSG00000078938	Syce3	1700007E06Rik|TSEG-2|TSEG2	synaptonemal complex central element protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-38902319-4	chr16	38902241	38902441	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_170599)	promoter-TSS (NM_170599)	-4.0	NM_170599	207683.0	Mm.245564	NM_170599	ENSMUSG00000022790	Igsf11	1700025L02Rik|BT-IgSF|Igsf13	immunoglobulin superfamily, member 11	protein-coding	4.27278474503237	2.68013656841252	2.40299476137176	3.21881477999451	3.74073882890946	4.26763829820351	2.89918209233117	2.80224936853378	0.290569054746111	0.670459697286838	0.99359666617512
Merged-chr5-114688919-2	chr5	114688819	114689019	+	897.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019821, intron 1 of 4)	intron (NM_019821, intron 1 of 4)	2016.0	NM_019821	56356.0	Mm.275766	NM_019821	ENSMUSG00000011884	Gltp	1110001F24Rik|C76925|C77564	glycolipid transfer protein	protein-coding	0.304126438680011	0.299533758815334	0.602771647967111	-0.0540148125395146	0.0825084331807631	-0.0441846558560798	-0.0491356722832618	-0.053352444323758	-3.02592803481686	0.159808312751195	1
Merged-chr9-54514066-2	chr9	54513966	54514166	+	741.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12440.0	NM_172771	235380.0	Mm.93636	NM_172771	ENSMUSG00000041268	Dmxl2	6330586A12|6430411K14Rik|E130119P06Rik|mKIAA0856	Dmx-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45222397-2	chr7	45222297	45222497	+	593.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285498, intron 6 of 11)	PB1D7|SINE|Alu	6644.0	NM_001285498	21677.0	Mm.3019	NM_011565	ENSMUSG00000030796	Tead2	ETEF-1|ETF|Etdf|TEAD-2|TEF-4|TEF4	TEA domain family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124468851-2	chr5	124468751	124468951	+	568.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030259, intron 2 of 3)	PB1D9|SINE|Alu	9384.0	NM_030259	80291.0	Mm.425280	NM_030259	ENSMUSG00000029401	Rilpl2	-	Rab interacting lysosomal protein-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-128724362-4	chr4	128724279	128724479	+	998.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018774, intron 9 of 14)	intron (NM_018774, intron 9 of 14)	-3192.0	NM_001195083	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70538856-4	chr8	70538751	70538951	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007924)	promoter-TSS (NM_007924)	-824.0	NM_007924	13716.0	Mm.271973	NM_007924	ENSMUSG00000070002	Ell	Ell1|Men	elongation factor RNA polymerase II	protein-coding	6.24714240767018	5.90142280337471	6.376238365592	5.95372480354059	6.14756906659813	6.39254242515006	6.85161137454549	6.32482634419971	0.340305411582714	0.139639236437277	0.583760125008521
Merged-chr3-13988982-2	chr3	13988882	13989082	+	701.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163329, intron 1 of 7)	L1Md_F2|LINE|L1	42677.0	NM_001163330	76897.0	Mm.422625	NM_178631	ENSMUSG00000039717	Ralyl	0710005M24Rik	RALY RNA binding protein-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-116083734-4	chr9	116083631	116083831	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	91632.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	1.31342989920834	1.12479315312927	2.21641355929432	0.85104479930213	1.44693258609152	0.886213125347118	1.70603880551197	1.39733023018301	-0.369910479610867	0.776262333265735	0.998431161219273
Merged-chr13-54593829-1	chr13	54593729	54593929	+	565.0	f0_balb.idr	3' UTR (NM_001347512, exon 6 of 6)	3' UTR (NM_001347512, exon 6 of 6)	3598.0	NM_025933	67044.0	Mm.29353	NM_025933	ENSMUSG00000025868	Higd2a	2010110M21Rik|AA690237	HIG1 domain family, member 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-106203142-4	chr9	106203034	106203234	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011876)	promoter-TSS (NM_011876)	26.0	NM_011876	23999.0	Mm.274346	NM_011876	ENSMUSG00000023277	Twf2	A6-related|AU014993|Ptk9l|Ptk9r	twinfilin actin binding protein 2	protein-coding	2.59682719430824	1.55914690545288	2.47672852120315	2.99149023723183	2.93569882013488	2.27049598648724	3.09964972557108	2.92750822128267	0.652156302556905	0.409822410139505	0.89372308288917
Merged-chr18-82861719-3	chr18	82861635	82861835	+	890.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB8|LINE|L1	5838.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-59890953-2	chr10	59890853	59891053	+	645.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_019965, exon 3 of 9)	exon (NM_019965, exon 3 of 9)	11362.0	NM_019965	56709.0	Mm.103610	NM_019965	ENSMUSG00000020109	Dnajb12	Dj10|mDj10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95459307-3	chr3	95459206	95459406	+	951.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037737, intron 3 of 21)	intron (NM_001037737, intron 3 of 21)	24916.0	NM_001037737	11863.0	Mm.250265	NM_009709	ENSMUSG00000015522	Arnt	D3Ertd557e|Drnt|ESTM42|Hif1b|W08714|bHLHe2|mKIAA4051	aryl hydrocarbon receptor nuclear translocator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-59542579-4	chr11	59542463	59542663	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145827)	promoter-TSS (NM_145827)	-123.0	NM_145827	216799.0	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-80918058-4	chr12	80917956	80918156	+	874.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6391.0	NR_033786	67340.0	Mm.386790	NR_033786	ENSMUSG00000101912	1700052I22Rik	-	RIKEN cDNA 1700052I22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-87518626-2	chr3	87518480	87518680	+	699.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6998.0	NM_001083318	27049.0	Mm.219460	NM_012051	ENSMUSG00000003382	Etv3	AI414410|METS|Pe1	ets variant 3	protein-coding	-0.991597071560028	-1.11266276692436	-1.12372915630895	-1.13234486067054	-1.13506748179545	-1.11026463418018	-1.12122396832063	-0.590291635890923	1.70329920231503	0.601976331032042	1
Merged-chr3-84314740-4	chr3	84314638	84314838	+	973.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9963.0	NM_001271726	80890.0	Mm.44876	NM_030706	ENSMUSG00000027993	Trim2	mKIAA0517|narf	tripartite motif-containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-32268865-4	chr17	32268767	32268967	+	975.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286630, intron 1 of 19)	intron (NM_001286630, intron 1 of 19)	15256.0	NM_198094	57261.0	Mm.253518	NM_020508	ENSMUSG00000024002	Brd4	Brd5|HUNK1|MCAP|WI-11513	bromodomain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-79602153-1	chr1	79602053	79602253	+	646.833313	f1_balb.idr	Intergenic	MLT1J2|LTR|ERVL-MaLR	69819.0	NM_183027	252903.0	Mm.32409	NM_183027	ENSMUSG00000054702	Ap1s3	1190009B22|Jr2|[s]3A	adaptor-related protein complex AP-1, sigma 3	protein-coding	1.85504432495427	2.10806665157402	1.31400745063208	1.27699606541651	3.25160132367486	3.18884209304026	2.91710466494102	2.98300325532482	3.16889257220002	0.000376287014234641	0.00883532109897565
Merged-chr10-80657355-2	chr10	80657255	80657455	+	812.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145361)	promoter-TSS (NM_145361)	-284.0	NM_145361	208198.0	Mm.60720	NM_145361	ENSMUSG00000003344	Btbd2	2610037C03Rik|4930512K17Rik	BTB (POZ) domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-20112446-4	chr11	20112358	20112558	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146243, intron 1 of 8)	CpG	493.0	NM_146243	66713.0	Mm.259045	NM_146243	ENSMUSG00000020152	Actr2	4921510D23Rik|AA409782|Arp2|D6Ertd746e	ARP2 actin-related protein 2	protein-coding	5.96669879528572	5.78050374419703	5.08357088098183	5.48545232229729	5.4059308388205	5.76226131510388	5.39773965803751	5.70245610320564	-0.0551888577260432	0.844549886967221	0.998431161219273
Merged-chr3-21988304-4	chr3	21988117	21988317	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-88435.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-87972210-4	chr17	87972098	87972298	+	995.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	-2852.0	NM_010830	17688.0	Mm.18210	NM_010830	ENSMUSG00000005370	Msh6	AU044881|AW550279|GTBP|Gtmbp	mutS homolog 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-59220923-3	chr10	59220779	59220979	+	802.75	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024910, intron 1 of 9)	intron (NM_001024910, intron 1 of 9)	968.0	NM_001024911	103080.0	Mm.346842	NM_001024910	ENSMUSG00000019917	Sept10	4921515A04Rik|9430099J10Rik|AA408298|AI874685	septin 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-79286533-4	chr11	79286422	79286622	+	834.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31827.0	NM_019653	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-155197863-4	chr4	155197763	155197963	+	835.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011385, intron 1 of 6)	intron (NM_011385, intron 1 of 6)	24672.0	NM_011385	20481.0	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-132684899-2	chr3	132684799	132684999	+	684.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163455, intron 1 of 25)	intron (NM_001163455, intron 1 of 25)	755.0	NM_001163455	271981.0	Mm.257864	NM_173032	ENSMUSG00000028030	Tbck	1700120J03Rik|9430001M19|A630047E20Rik|C030007I09Rik|Tbckl	TBC1 domain containing kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-22077443-4	chr3	22077336	22077536	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030732, intron 1 of 15)	intron (NM_030732, intron 1 of 15)	784.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-176825907-4	chr1	176825807	176826007	+	815.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357390, intron 2 of 18)	intron (NM_001357390, intron 2 of 18)	10226.0	NR_037996	15365.0	Mm.441435	NR_037996		Hmga2-ps1	EG666235|Gm7996|Hmgic-ps1|[y]i-c	high mobility group AT-hook 2, pseudogene 1	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5390525-2	chr19	5390425	5390625	+	756.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_033224)	TTS (NR_033224)	-1822.0	NM_016882	20227.0	Mm.34562	NM_016882	ENSMUSG00000039148	Sart1	U5-110K	squamous cell carcinoma antigen recognized by T cells 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-103456800-2	chr2	103456700	103456900	+	614.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009804, intron 11 of 12)	intron (NM_009804, intron 11 of 12)	28353.0	NM_009804	12359.0	Mm.4215	NM_009804	ENSMUSG00000027187	Cat	2210418N07|Cas-1|Cas1|Cs-1	catalase	protein-coding	-0.694715100270909	-0.0619549970237906	-0.687588246117985	-0.690268621584873	-0.306221209011159	-0.683328285024547	-0.686821754782012	-0.689800466692089	-0.890639573273157	0.760595300425877	1
Merged-chr7-101389682-2	chr7	101389582	101389782	+	630.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001040111, intron 11 of 33)	PB1D9|SINE|Alu	4156.0	NM_027180	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-35110586-2	chr16	35110486	35110686	+	659.099976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45050.0	NM_001012765	224129.0	Mm.41137	NM_001012765	ENSMUSG00000022840	Adcy5	AW121902|Ac5	adenylate cyclase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-104281148-4	chr9	104281044	104281244	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18214.0	NM_001163026	235567.0	Mm.217256	NM_001163026	ENSMUSG00000032560	Dnajc13	D030002L11Rik|Gm1124|RME-8|Rme8|mKIAA0678	DnaJ heat shock protein family (Hsp40) member C13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-96612104-3	chr9	96612003	96612203	+	957.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053268, intron 1 of 23)	L2|LINE|L2	19400.0	NM_053268	114713.0	Mm.124502	NM_053268	ENSMUSG00000032413	Rasa2	5430433H21Rik|AA517451|AU023900|GAP1m	RAS p21 protein activator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-33980661-4	chr17	33980572	33980772	+	945.033325	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033305)	promoter-TSS (NR_033305)	-820.0	NR_033305	433100.0	Mm.380381	NM_001013793		AA388235	-	expressed sequence AA388235	ncRNA	5.50028150420684	4.3444526127377	5.36305810497649	6.05175565292237	3.43576251810458	3.58319066592207	4.16269656287608	4.39308114106248	-1.82531461918767	1.82367434953662e-05	0.000754498098128979
Merged-chr12-51704141-4	chr12	51704055	51704255	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001329698, intron 1 of 5)	intron (NM_001329698, intron 1 of 5)	-12241.0	NM_052973	94186.0	Mm.65979	NM_052973	ENSMUSG00000020954	Strn3	Gs2na|SG2NA	striatin, calmodulin binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91937604-2	chr16	91937504	91937704	+	641.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-5974.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-113270548-2	chr13	113270448	113270648	+	573.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60889.0	NM_023612	71690.0	Mm.38929	NM_023612	ENSMUSG00000042379	Esm1	0610042H23Rik|AV004503|ESM-1	endothelial cell-specific molecule 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-80154031-4	chr11	80153941	80154141	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172133)	promoter-TSS (NM_172133)	-121.0	NM_172133	216991.0	Mm.341520	NM_172133	ENSMUSG00000020709	Adap2	Centa2	ArfGAP with dual PH domains 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-34555048-2	chr6	34554948	34555148	+	572.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43456.0	NM_001347100	109624.0	Mm.308134	NM_145575	ENSMUSG00000029761	Cald1	4833423D12Rik|AI195384|AV071549|AW536160|C920027I18Rik	caldesmon 1	protein-coding	-0.24064057376598	0.0904639636195319	-0.0747707700256266	0.0365674320761286	-0.239962658197974	-0.0515818077655657	-0.232487443210382	0.0406977401447266	-0.753079671246752	0.73075766391909	1
Merged-chr18-36287612-4	chr18	36287502	36287702	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008989, exon 2 of 2)	exon (NM_008989, exon 2 of 2)	6440.0	NM_008989	19290.0	Mm.231802	NM_008989	ENSMUSG00000043991	Pura	CAGER-1|Pur-alpha|ssCRE-BP	purine rich element binding protein A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46045207-4	chr19	46045079	46045279	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001113408, exon 1 of 11)	5' UTR (NM_001113408, exon 1 of 11)	132.0	NM_001113408	16825.0	Mm.327442	NM_010697	ENSMUSG00000025223	Ldb1	CLIM2|NLI	LIM domain binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-88047560-3	chr7	88047465	88047665	+	672.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081414, intron 8 of 9)	intron (NM_001081414, intron 8 of 9)	-230520.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-86292408-2	chr11	86292308	86292508	+	626.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_130959, intron 6 of 6)	intron (NR_130959, intron 6 of 6)	-34840.0	NM_027421	70422.0	Mm.171304	NM_027421	ENSMUSG00000018068	Ints2	2810417D08Rik|AA408260|AI987735|mKIAA1287	integrator complex subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-102752025-4	chr2	102751916	102752116	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077514, intron 6 of 10)	intron (NM_001077514, intron 6 of 10)	-5256.0	NR_153853	102637542.0	Mm.371582	NR_153852		Gm13872	-	predicted gene 13872	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-9117218-2	chr4	9117118	9117318	+	855.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx10|LINE|L1	-152075.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-69401207-4	chr12	69401103	69401303	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29053.0	NM_007481	11845.0	Mm.27308	NM_007481	ENSMUSG00000044147	Arf6	AI788669|AW496366	ADP-ribosylation factor 6	protein-coding	5.94152366456664	5.47357605079375	5.55900813229198	5.83894522918353	6.42366129097353	6.2224282425364	7.11209955653962	6.31158599875229	0.91721819252353	0.000317365087181192	0.00765632637265404
Merged-chr7-100159249-2	chr7	100159156	100159356	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_026010)	promoter-TSS (NM_026010)	-21.0	NM_026010	67164.0	Mm.46777	NM_026010	ENSMUSG00000030725	Lipt2	2610209A20Rik	lipoyl(octanoyl) transferase 2 (putative)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-32681099-4	chr19	32680999	32681199	+	889.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026487, intron 8 of 9)	intron (NM_026487, intron 8 of 9)	31199.0	NM_026487	67979.0	Mm.27123	NM_026487	ENSMUSG00000013662	Atad1	4921525H23Rik|AW107648|Thorase	ATPase family, AAA domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-85706768-3	chr11	85706668	85706868	+	620.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045875, exon 2 of 6)	non-coding (NR_045875, exon 2 of 6)	12976.0	NR_045875	71489.0	Mm.442482	NR_045875	ENSMUSG00000086199	Bcas3os1	8430403D17Rik	breast carcinoma amplified sequence 3, opposite strand 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166717343-6	chr2	166717179	166717379	+	937.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-3447.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123023350-3	chr5	123023242	123023442	+	942.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175423, intron 1 of 1)	intron (NM_175423, intron 1 of 1)	8268.0	NM_175423	109305.0	Mm.218582	NM_175423	ENSMUSG00000049686	Orai1	D730049H07Rik|Tmem142a|orai-1	ORAI calcium release-activated calcium modulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-4639020-4	chr11	4638935	4639135	+	918.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029291, intron 1 of 19)	intron (NM_029291, intron 1 of 19)	1242.0	NM_029291	75452.0	Mm.439906	NM_029291	ENSMUSG00000020412	Ascc2	1700011I11Rik|2610034L15Rik|AI482016|ASC1p100|AW046480	activating signal cointegrator 1 complex subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-32418827-2	chr18	32418727	32418927	+	640.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360876, intron 7 of 17)	intron (NM_001360876, intron 7 of 17)	-40543.0	NR_045403	402767.0	Mm.385109	NR_045403	ENSMUSG00000097413	A830052D11Rik	-	RIKEN cDNA A830052D11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-35850547-4	chr8	35850444	35850644	+	938.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23985.0	NM_027998	71908.0	Mm.37817	NM_027998	ENSMUSG00000055976	Cldn23	2310014B08Rik	claudin 23	protein-coding	-0.505926167716008	0.259640363760776	-0.497065406176093	-0.500391200628115	-0.50510169337382	-0.491795678628838	-0.496115794697035	-0.0478802510867875	-1.00196306501655	0.715012845595924	1
Merged-chr11-77464115-2	chr11	77464015	77464215	+	929.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_139129, intron 1 of 8)	intron (NM_139129, intron 1 of 8)	202.0	NM_139130	216961.0	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10240792-4	chr19	10240718	10240918	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033481)	promoter-TSS (NM_001033481)	-70.0	NM_001033481	225908.0	Mm.329716	NM_001033481	ENSMUSG00000036098	Myrf	6030439E18|Gm1804|Gm98|Mrf	myelin regulatory factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30481551-2	chr2	30481451	30481651	+	817.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7352.0	NM_030244	72500.0	Mm.295464	NM_030244	ENSMUSG00000089762	Ier5l	2610524G09Rik	immediate early response 5-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-83074418-4	chr13	83074318	83074518	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-376085.0	NR_039537	100628621.0		NR_039537	ENSMUSG00000106655	Mir3961	mmu-mir-3961	microRNA 3961	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-101461034-2	chr14	101460934	101461134	+	705.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081278, intron 12 of 18)	intron (NM_001081278, intron 12 of 18)	148157.0	NM_001081278	210789.0	Mm.320639	NM_173380	ENSMUSG00000033083	Tbc1d4	5930406J04Rik|A930035N22|AV295684|As160	TBC1 domain family, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118157396-2	chr11	118157296	118157496	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28177.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-33873899-2	chr2	33873799	33873999	+	750.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_175184, intron 2 of 9)	MER20|DNA|hAT-Charlie	14047.0	NM_175184	72543.0	Mm.254914	NM_175184	ENSMUSG00000038740	Mvb12b	2610200O14Rik|2610528K11Rik|AI414895|Fam125b	multivesicular body subunit 12B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-22916880-4	chr19	22916781	22916981	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001035239, intron 19 of 24)	intron (NM_001035239, intron 19 of 24)	166276.0	NR_029591	387200.0		NR_029591	ENSMUSG00000065507	Mir204	Mirn204|mir-204|mmu-mir-204	microRNA 204	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-109614682-4	chr8	109614582	109614782	+	709.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001286454, exon 1 of 33)	exon (NM_001286454, exon 1 of 33)	165.0	NM_181544	244646.0	Mm.436810	NM_181544	ENSMUSG00000048827	Pkd1l3	-	polycystic kidney disease 1 like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75472935-4	chr11	75472916	75473116	+	857.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4966.0	NM_027249	380712.0	Mm.41393	NM_027249	ENSMUSG00000038217	Tlcd2	-	TLC domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-144998416-1	chr4	144998316	144998516	+	852.0	f0_balb.idr	intron (NM_001276465, intron 67 of 69)	intron (NM_001276465, intron 67 of 69)	105279.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-57923084-4	chr15	57922981	57923181	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001167679, exon 4 of 18)	exon (NM_001167679, exon 4 of 18)	10882.0	NM_001356310	210544.0	Mm.390835	NM_199300	ENSMUSG00000022364	Tbc1d31	4B3|D330013L20Rik|Gm85|Wdr67	TBC1 domain family, member 31	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-18873527-4	chr7	18873433	18873633	+	948.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11157.0	NM_009402	21946.0	Mm.21855	NM_009402	ENSMUSG00000030413	Pglyrp1	PGRP|PGRP-S|Pglyrp|Tag7|Tasg7|Tnfsf3l	peptidoglycan recognition protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127589010-2	chr10	127588892	127589092	+	725.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 13 of 88)	intron (NM_008512, intron 13 of 88)	32156.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	-0.953721354153451	-1.41025554057125	-1.42001056191158	-1.42802362688808	-1.44024889148474	-1.40814158675276	-1.41780223890411	-1.42658929208844	-2.11310844444413	0.543369238581748	1
Merged-chr1-40085449-2	chr1	40085349	40085549	+	627.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360800)	promoter-TSS (NM_001360800)	402.0	NR_037980	100047133.0	Mm.447052	NR_037980	ENSMUSG00000097899	Gm16894	-	predicted gene, 16894	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-7814084-4	chr9	7813983	7814183	+	783.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	22723.0	NM_001291503	11797.0	Mm.335659	NM_007465	ENSMUSG00000057367	Birc2	AW146227|Api1|Api2|Birc3|C-IAP1|C330006D17Rik|HIAP1|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF48|cIAP1|cIAP2|mcIAP1	baculoviral IAP repeat-containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85395902-3	chr12	85395787	85395987	+	909.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21170.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6345378-4	chr19	6345275	6345475	+	784.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_117093, intron 14 of 30)	intron (NR_117093, intron 14 of 30)	-1105.0	NR_105955	102465598.0		NR_105955	ENSMUSG00000099230	Mir6989	Gm27885|mmu-mir-6989	microRNA 6989	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-35529919-2	chr18	35529819	35530019	+	742.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23491.0	NR_038073	100503380.0	Mm.482118	NR_038073	ENSMUSG00000097769	Snhg4	Gm17457	small nucleolar RNA host gene 4	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-78851084-2	chr13	78850984	78851184	+	619.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-652211.0	NM_010151	13865.0	Mm.439653	NM_010151	ENSMUSG00000069171	Nr2f1	COUP-TF1|COUP-TFI|COUPTFA|EAR-3|EAR3|Erbal3|SVP44|Tcfcoup1	nuclear receptor subfamily 2, group F, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120506516-1	chr8	120506416	120506616	+	541.0	f1_c57bl6.idr	intron (NM_198671, intron 1 of 15)	intron (NM_198671, intron 1 of 15)	17650.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-22488381-2	chr4	22488281	22488481	+	563.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008899)	promoter-TSS (NM_008899)	-15.0	NM_008899	18992.0	Mm.129387	NM_008899	ENSMUSG00000095139	Pou3f2	9430075J19Rik|A230098E07Rik|Brn-2|Brn2|OTF-7|Otf7|oct-7	POU domain, class 3, transcription factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191062957-4	chr1	191062874	191063074	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163421)	promoter-TSS (NM_001163421)	-42.0	NM_026895	68972.0	Mm.237188	NM_026895	ENSMUSG00000026632	Tatdn3	1500010M24Rik	TatD DNase domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-93214402-4	chr2	93214290	93214490	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183180, intron 5 of 9)	intron (NM_183180, intron 5 of 9)	26842.0	NM_001025246	277414.0	Mm.41033	NM_001025246	ENSMUSG00000068735	Trp53i11	Tp53i11	transformation related protein 53 inducible protein 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131492629-4	chr1	131492516	131492716	+	880.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081011, intron 2 of 22)	intron (NM_001081011, intron 2 of 22)	34745.0	NM_001081011	14270.0	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-86800949-4	chr12	86800846	86801046	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	66577.0	NM_001195767	627607.0	Mm.341880	NM_001195767	ENSMUSG00000059114	Lrrc74a	EG627607|Gm6772|Lrrc74	leucine rich repeat containing 74A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-120965893-2	chr9	120965793	120965993	+	699.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177589, intron 36 of 36)	intron (NM_177589, intron 36 of 36)	10807.0	NR_106058	102465661.0		NR_106058	ENSMUSG00000106193	Mir7090	mmu-mir-7090	microRNA 7090	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-90162864-2	chr9	90162782	90162982	+	638.75	f0_balb.idr|f1_balb.idr	promoter-TSS (NM_001326294)	promoter-TSS (NM_001326294)	-96.0	NM_001003911	108153.0	Mm.102141	NM_001003911	ENSMUSG00000032363	Adamts7	ADAM-TS7|ADAMTS7B	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-90895216-1	chr5	90895116	90895316	+	577.0	f0_balb.idr	Intergenic	Lx3C|LINE|L1	3971.0	NM_008176	14825.0	Mm.21013	NM_008176	ENSMUSG00000029380	Cxcl1	Fsp|Gro1|KC|Mgsa|N51|Scyb1|gro	chemokine (C-X-C motif) ligand 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-17146899-4	chr16	17146794	17146994	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026940)	promoter-TSS (NM_026940)	-73.0	NM_026940	69101.0	Mm.101656	NM_026940	ENSMUSG00000041774	Ydjc	1810015A11Rik|4930521M19Rik	YdjC homolog (bacterial)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-32349142-4	chr17	32349042	32349242	+	789.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017476, intron 1 of 13)	MER20|DNA|hAT-Charlie	1435.0	NM_017476	54194.0	Mm.281005	NM_017476	ENSMUSG00000002625	Akap8l	HAP95|Nakap95	A kinase (PRKA) anchor protein 8-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72050826-1	chr6	72050726	72050926	+	700.0	f0_balb.idr	Intergenic	Intergenic	-8298.0	NR_046180	330350.0	Mm.246787	NR_046180	ENSMUSG00000108356	9130221F21Rik	9130221F21	RIKEN cDNA 9130221F21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-53122982-2	chr2	53122882	53123082	+	654.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 22 of 26)	intron (NM_172409, intron 22 of 26)	68205.0	NM_018785	56194.0	Mm.257474	NM_018785	ENSMUSG00000061136	Prpf40a	2810012K09Rik|FBP-11|FBP11|Fnbp11|Fnbp3	pre-mRNA processing factor 40A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-136428015-2	chr3	136427915	136428115	+	962.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21334.0	NR_040592	70055.0	Mm.261063	NR_040592	ENSMUSG00000099508	1700030L20Rik	-	RIKEN cDNA 1700030L20 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-80489934-3	chr11	80489835	80490035	+	954.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177390, intron 21 of 21)	intron (NM_177390, intron 21 of 21)	12912.0	NM_009871	12569.0	Mm.142275	NM_009871	ENSMUSG00000048895	Cdk5r1	Cdk5r|D11Bwg0379e|p25|p35	cyclin-dependent kinase 5, regulatory subunit 1 (p35)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71253619-2	chr17	71253550	71253750	+	752.8690190000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357337, intron 7 of 7)	intron (NM_001357337, intron 7 of 7)	48996.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-43348071-2	chr11	43347971	43348171	+	587.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26390.0	NR_029558	387164.0		NR_029558	ENSMUSG00000065601	Mir146	Mirn146|miR-146a|mmu-mir-146	microRNA 146	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-73622068-4	chr15	73621968	73622168	+	969.18335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033219, intron 1 of 7)	A-rich|Low_complexity|Low_complexity	2676.0	NM_001033219	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-94993714-3	chr9	94993596	94993796	+	728.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177909, intron 9 of 15)	intron (NM_177909, intron 9 of 15)	241867.0	NR_106116	102465763.0		NR_106116	ENSMUSG00000098251	Mir7656	Gm27614|mmu-mir-7656	microRNA 7656	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21034771-2	chr9	21034671	21034871	+	750.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_008319, exon 4 of 11)	exon (NM_008319, exon 4 of 11)	-2443.0	NR_035438	100316681.0		NR_035438	ENSMUSG00000084663	Mir1900	Mirn1900|mmu-mir-1900	microRNA 1900	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-40730353-2	chr19	40730248	40730448	+	653.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001304721, intron 7 of 9)	intron (NM_001304721, intron 7 of 9)	70578.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	0.496006724184418	0.524973390171248	1.12599862212594	1.36247133254989	1.02065652680752	0.914188106715641	0.713470233517297	0.509544168614826	-0.673758605289144	0.682983855404418	1
Merged-chr18-67592843-2	chr18	67592743	67592943	+	637.299988	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F2|SINE|Alu	-40122.0	NM_194355	68166.0	Mm.208723	NM_176832	ENSMUSG00000024533	Spire1	6030430B19Rik|AI415299|AU022898|AW550622|Spir-1	spire type actin nucleation factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-4659088-4	chr7	4658973	4659173	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172894)	promoter-TSS (NM_172894)	-123.0	NM_172894	243819.0	Mm.258670	NM_172894	ENSMUSG00000052296	Ppp6r1	2010309P17Rik|AI836219|B430201G11Rik|D030074N20Rik|Pp6r1|Saps1|mKIAA1115	protein phosphatase 6, regulatory subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-20590295-4	chr10	20590201	20590401	+	931.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013875, intron 2 of 12)	intron (NM_013875, intron 2 of 12)	-41973.0	NM_001347366	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-118487896-2	chr7	118487796	118487996	+	675.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001033380, exon 1 of 1)	3' UTR (NM_001033380, exon 1 of 1)	4079.0	NM_001033380	319622.0	Mm.323386	NM_001033380	ENSMUSG00000095115	Itpripl2	C130081G24|E030018N11Rik	inositol 1,4,5-triphosphate receptor interacting protein-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-25261351-2	chr18	25261251	25261451	+	681.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033532, intron 5 of 10)	RMER5|LTR|ERV1	92331.0	NM_001033532	225289.0	Mm.391081	NM_001033532	ENSMUSG00000033632	AW554918	4921538P22|AI461742|Kiaa1328|mKIAA1328	expressed sequence AW554918	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-112617395-4	chr12	112617311	112617511	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2636.0	NM_007421	11565.0	Mm.3440	NM_007421	ENSMUSG00000011148	Adssl1	AI528595|Adss|Adss1	adenylosuccinate synthetase like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-38584850-1	chr18	38584750	38584950	+	548.0	f1_balb.idr	Intergenic	Intergenic	16418.0	NM_011898	24066.0	Mm.42038	NM_011898	ENSMUSG00000024427	Spry4	A030006O18Rik|sprouty4	sprouty RTK signaling antagonist 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-61605709-4	chr3	61605616	61605816	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	241209.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-143918559-4	chr1	143918473	143918673	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	85576.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-146130365-1	chr2	146130265	146130465	+	605.0	f1_c57bl6.idr	Intergenic	Intergenic	-91632.0	NM_016889	53626.0	Mm.379070	NM_016889	ENSMUSG00000068154	Insm1	IA-1	insulinoma-associated 1	protein-coding	-0.161128716517695	-0.883036795930771	-0.890611598625965	-0.893061778427922	-0.744085630581921	-0.880233907459775	-0.889911326547133	-0.892633676848341	-2.19211081861067	0.468800837409772	1
Merged-chr15-84803867-1	chr15	84803767	84803967	+	591.0	f1_c57bl6.idr	intron (NM_001356573, intron 4 of 12)	intron (NM_001356573, intron 4 of 12)	51232.0	NM_001356573	271305.0	Mm.101022	NM_001081166	ENSMUSG00000016624	Phf21b	A730032D07Rik	PHD finger protein 21B	protein-coding	3.10033768721584	1.5320973711913	3.22245401006658	1.92165512686466	2.86078903468914	2.42600533295634	2.83290952763631	2.83834992254258	0.175644560062035	0.832634284783757	0.998431161219273
Merged-chr3-48080830-4	chr3	48080708	48080908	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54049.0	NR_040408	666202.0	Mm.465057	NR_040408	ENSMUSG00000103257	Gm7977	EG666202	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide pseudogene	pseudo	5.69867686421657	6.01908314018755	4.71543943452328	4.89511155805568	5.66196582007835	5.76746584062166	5.49760225446746	4.99493406674972	0.08290523122703	0.806377903911395	0.998431161219273
Merged-chr2-118546379-4	chr2	118546270	118546470	+	943.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001331221, intron 2 of 3)	intron (NM_001331221, intron 2 of 3)	1229.0	NM_001331221	171543.0	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-83474674-2	chr15	83474574	83474774	+	551.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-10068.0	NM_001358643	23970.0	Mm.23978	NM_011862	ENSMUSG00000016664	Pacsin2	AI197433	protein kinase C and casein kinase substrate in neurons 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52651581-3	chr13	52651488	52651688	+	785.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54706.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-22708732-3	chr8	22708635	22708835	+	987.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-2152.0	NM_001159774	16150.0	Mm.277886	NM_010546	ENSMUSG00000031537	Ikbkb	AI132552|IKK-2|IKK-beta|IKK2|IKK[b]|IKKbeta	inhibitor of kappaB kinase beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180296221-4	chr1	180296109	180296309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	-34267.0	NM_001081175	320404.0	Mm.132535	NM_001081175	ENSMUSG00000038855	Itpkb	1110033J02Rik|E130307H12Rik	inositol 1,4,5-trisphosphate 3-kinase B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-43231683-2	chr5	43231583	43231783	+	756.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_028417, intron 1 of 7)	intron (NR_028417, intron 1 of 7)	-1780.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106792647-2	chr11	106792547	106792747	+	783.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166685, intron 3 of 18)	intron (NM_001166685, intron 3 of 18)	3395.0	NM_001166685	320162.0	Mm.30524	NM_177088	ENSMUSG00000018372	Cep95	4732496G21Rik|AI118346|AI448335|Ccdc45|D330027A14Rik|F630025I20Rik	centrosomal protein 95	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-110229775-2	chr9	110229675	110229875	+	703.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_009211, intron 26 of 27)	intron (NM_009211, intron 26 of 27)	-14008.0	NM_001166273	29873.0	Mm.38496	NM_013884	ENSMUSG00000032482	Cspg5	Caleb|Ngc	chondroitin sulfate proteoglycan 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3510145-1	chr4	3510045	3510245	+	693.0	f1_balb.idr	Intergenic	Intergenic	-26945.0	NR_037306	100499523.0		NR_037306	ENSMUSG00000094253	Mir3471-2	mmu-mir-3471-2	microRNA 3471-2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-116996497-2	chr4	116996397	116996597	+	819.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175244, intron 3 of 20)	intron (NM_175244, intron 3 of 20)	1149.0	NM_175244	76608.0	Mm.251420	NM_175244	ENSMUSG00000046861	Hectd3	1700064K09Rik|AI467540|AW743312	HECT domain E3 ubiquitin protein ligase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65574797-3	chr9	65574684	65574884	+	828.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153119, intron 1 of 5)	intron (NM_153119, intron 1 of 5)	5303.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	2.36715068409784	1.42595111989111	2.64771512240903	1.35144262246636	1.75951306085902	1.82639374770597	1.91160609323003	1.35729864947674	-0.9571126995758	0.359197127275635	0.856306289008338
Merged-chr8-25994182-4	chr8	25994183	25994383	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029037)	promoter-TSS (NM_029037)	-162.0	NM_029037	74653.0	Mm.17631	NM_029037	ENSMUSG00000037251	Pomk	4930444A02Rik|Sgk196	protein-O-mannose kinase	protein-coding	5.14786556945119	5.01430832795752	5.34149547526588	5.30096655013965	5.87350953607074	6.03187815863267	5.55387192701543	4.99574809259977	0.522659459177671	0.0819403414529405	0.437720488313615
Merged-chr3-69005935-4	chr3	69005830	69006030	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356976, intron 1 of 23)	CpG	1192.0	NM_133786	70099.0	Mm.206841	NM_133786	ENSMUSG00000034349	Smc4	2500002A22Rik|C79747|SMC-4|Smc4l1	structural maintenance of chromosomes 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-103177230-4	chr15	103177133	103177333	+	831.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13949.0	NM_027885	71726.0	Mm.254820	NM_027885	ENSMUSG00000036061	Smug1	1200013B09Rik|A930006H09Rik|C85220	single-strand selective monofunctional uracil DNA glycosylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-98338483-3	chr7	98338376	98338576	+	925.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17268.0	NM_001360615	66190.0	Mm.334041	NM_025408	ENSMUSG00000030760	Acer3	1110057L18Rik|5430429L08Rik|AV015045|Phca|aPHC	alkaline ceramidase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28436489-4	chr7	28436407	28436607	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022024)	promoter-TSS (NM_022024)	-316.0	NM_175021	233033.0	Mm.54120	NM_175021	ENSMUSG00000109336	Samd4b	BC042901	sterile alpha motif domain containing 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-3671375-4	chr11	3671279	3671479	+	926.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198162, intron 5 of 25)	intron (NM_198162, intron 5 of 25)	12679.0	NM_198162	74522.0	Mm.139127	NM_198162	ENSMUSG00000034543	Morc2a	8430403M08Rik|Zcwcc1	microrchidia 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-147420327-2	chr4	147420227	147420427	+	571.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039209, intron 1 of 2)	intron (NM_001039209, intron 1 of 2)	-132950.0	NM_001014397	433804.0	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154	zinc finger protein 985	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-31410222-4	chr15	31410101	31410301	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42442.0	NM_027496	67434.0	Mm.102470	NM_026153	ENSMUSG00000022237	Ankrd33b	0610012A05Rik|3021401C12Rik|5730557B15Rik	ankyrin repeat domain 33B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-113197354-4	chr7	113197186	113197386	+	972.18335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10179.0	NM_001243048	11865.0	Mm.33970	NM_007489	ENSMUSG00000055116	Arntl	Arnt3|BMAL1b|Bmal1|MOP3|bHLHe5|bmal1b'	aryl hydrocarbon receptor nuclear translocator-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-49119680-1	chr7	49119580	49119780	+	551.0	f1_balb.idr	intron (NM_001111016, intron 2 of 38)	intron (NM_001111016, intron 2 of 38)	42478.0	NR_154465	108167511.0	Mm.400599	NR_154465		9130015G15Rik	-	RIKEN cDNA 9130015G15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-29640686-6	chr2	29640594	29640794	+	881.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054050, intron 1 of 23)	intron (NM_054050, intron 1 of 23)	20974.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-35754562-4	chr3	35754463	35754663	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151627, intron 1 of 31)	CpG	500.0	NM_029570	76295.0	Mm.239416	NM_029570	ENSMUSG00000037400	Atp11b	1110019I14Rik|ATPIF|ATPIR|mKIAA0956	ATPase, class VI, type 11B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-18672335-4	chr2	18672223	18672423	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_147778)	promoter-TSS (NM_147778)	-139.0	NM_147778	12238.0	Mm.249586	NM_147778	ENSMUSG00000051154	Commd3	AW550818|Bup|D2Ertd542e	COMM domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65454379-2	chr9	65454279	65454479	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6558.0	NM_138584	27965.0	Mm.272475	NM_138584	ENSMUSG00000032388	Spg21	ACP33|BM-019|C78576|D9Wsu18e|GL010|MAST	SPG21, maspardin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-29512215-7	chr19	29512104	29512304	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015567, intron 2 of 3)	(GGGAGA)n|Simple_repeat|Simple_repeat	9783.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-6432846-2	chr15	6432746	6432946	+	878.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001008702, intron 10 of 13)	intron (NM_001008702, intron 10 of 13)	-12487.0	NM_013485	12279.0	Mm.29095	NM_013485	ENSMUSG00000022149	C9	-	complement component 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-31220372-4	chr6	31220263	31220463	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040257)	promoter-TSS (NR_040257)	12.0	NR_040259	73652.0	Mm.441297	NR_040257	ENSMUSG00000087380	2210408F21Rik	-	RIKEN cDNA 2210408F21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-107721752-2	chr5	107721652	107721852	+	840.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_010278, exon 3 of 6)	exon (NM_010278, exon 3 of 6)	2591.0	NM_010278	14581.0	Mm.2078	NM_010278	ENSMUSG00000029275	Gfi1	AW495828|Gfi-1|Pal-1|Pal1	growth factor independent 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-120481467-2	chr5	120481367	120481567	+	667.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_145565, exon 6 of 8)	exon (NM_145565, exon 6 of 8)	4920.0	NM_145565	231691.0	Mm.28685	NM_145565	ENSMUSG00000029597	Sds	4432411H13Rik|SDH	serine dehydratase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56814001-2	chr17	56813901	56814101	+	797.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009056, intron 1 of 16)	intron (NM_009056, intron 1 of 16)	17007.0	NM_009056	19725.0	Mm.102	NM_009056	ENSMUSG00000024206	Rfx2	5430432H19Rik	regulatory factor X, 2 (influences HLA class II expression)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33351332-2	chr16	33351232	33351432	+	733.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	29404.0	NR_045709	100502742.0	Mm.217880	NR_045709	ENSMUSG00000097318	1700007L15Rik	linc-Iqcg|linc1609	RIKEN cDNA 1700007L15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-58618436-4	chr1	58618334	58618534	+	951.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32037.0	NM_025597	66495.0	Mm.2033	NM_025597	ENSMUSG00000026032	Ndufb3	2700033I16Rik|CI-B12	NADH dehydrogenase (ubiquinone) 1 beta subcomplex 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19088385-2	chr7	19088285	19088485	+	576.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_032418, intron 8 of 14)	B1_Mur1|SINE|Alu	1557.0	NR_037282	100526504.0		NR_037282	ENSMUSG00000092659	Mir3100	mir-3100|mmu-mir-3100	microRNA 3100	ncRNA	-0.096761821724709	0.775915225117714	0.998191743135801	-0.0862126898211408	-0.0951781963640421	-0.0701930608186564	-0.0781916068753274	-0.0851154605772718	-4.26446986074676	0.0581425175203081	1
Merged-chr5-90592855-1	chr5	90592755	90592955	+	638.0	f0_balb.idr	intron (NM_001252661, intron 12 of 13)	intron (NM_001252661, intron 12 of 13)	31646.0	NM_001252661	622307.0	Mm.389654	NM_001252661	ENSMUSG00000070690	5830473C10Rik	Arg|Gm17754	RIKEN cDNA 5830473C10 gene	protein-coding	-0.177733621508433	-0.805752184127899	-0.808838537208662	-0.811215655782965	-0.543043920694761	-0.803068160812789	-0.808158328395888	-0.810800640862464	-1.36685470224649	0.652602213394196	1
Merged-chr13-62855661-2	chr13	62855561	62855761	+	962.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007994, intron 1 of 6)	MTD|LTR|ERVL-MaLR	2709.0	NM_007994	14120.0	Mm.391871	NM_007994	ENSMUSG00000021456	Fbp2	Fbp-1|Fbp1|Rae-30	fructose bisphosphatase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141057206-4	chr7	141057101	141057301	+	958.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-4073.0	NM_177897	330671.0	Mm.133741	NM_177897	ENSMUSG00000055629	B4galnt4	BC038881|Gm1095|beta4GalNAcT4	beta-1,4-N-acetyl-galactosaminyl transferase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120587238-2	chr8	120587138	120587338	+	682.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178856, intron 2 of 4)	RSINE1|SINE|B4	1837.0	NM_178856	272551.0	Mm.275910	NM_178856	ENSMUSG00000031821	Gins2	2210013I18Rik|4833427B12Rik|AI323585|Pfs2	GINS complex subunit 2 (Psf2 homolog)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-130026841-2	chr5	130026741	130026941	+	634.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-2460.0	NM_133768	109900.0	Mm.23869	NM_133768	ENSMUSG00000025533	Asl	2510006M18Rik|ASAL	argininosuccinate lyase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-45759382-1	chr16	45759282	45759482	+	546.0	f1_balb.idr	intron (NM_001357078, intron 12 of 16)	intron (NM_001357078, intron 12 of 16)	-16427.0	NM_172511	213012.0	Mm.247453	NM_172511	ENSMUSG00000033157	Abhd10	-	abhydrolase domain containing 10	protein-coding	0.841723284811799	1.14448047163882	1.82586280573154	1.8619680507177	1.76932087105158	0.903050275345669	0.884855593804989	1.96082300781036	-0.0467385075788266	0.973000114450998	0.998431161219273
Merged-chr6-116004910-4	chr6	116004815	116005015	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9910.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117494974-2	chr8	117494874	117495074	+	829.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3301.0	NM_172285	234779.0	Mm.192699	NM_172285	ENSMUSG00000034330	Plcg2	PLC-gamma-2|PLCgamma2|Plcg-2	phospholipase C, gamma 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-23762862-4	chr11	23762772	23762972	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009044, intron 1 of 9)	intron (NM_009044, intron 1 of 9)	8098.0	NM_009044	19696.0	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-66230142-3	chr14	66230055	66230255	+	807.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	-16331.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-83182253-2	chr10	83182153	83182353	+	629.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021439, intron 2 of 2)	B4A|SINE|B4	155564.0	NM_177388	338365.0	Mm.67073	NM_177388	ENSMUSG00000034591	Slc41a2	A230035L05Rik|SLC41A1-L1	solute carrier family 41, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-3695110-2	chr7	3695010	3695210	+	820.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001164205, exon 3 of 5)	exon (NM_001164205, exon 3 of 5)	602.0	NM_024168	66078.0	Mm.379100	NM_024168	ENSMUSG00000035585	Tsen34	0610027F08Rik|Leng5	tRNA splicing endonuclease subunit 34	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-68464258-2	chr5	68464158	68464358	+	989.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR25A|LTR|ERVK	432423.0	NM_001018019	433899.0	Mm.332422	NM_001018019	ENSMUSG00000068082	Grxcr1	Tg(Eno2-Gabrb3)0370Brll|pi|tde	glutaredoxin, cysteine rich 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-123509385-2	chr3	123509286	123509486	+	811.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1050.0	NR_028574	69895.0	Mm.260791	NR_028574	ENSMUSG00000104960	Snhg8	1110065M07Rik|2010109N14Rik	small nucleolar RNA host gene 8	ncRNA	2.16940098010826	1.93511776361923	2.13907834280822	1.8249881293784	1.99271118349744	1.32000538007384	2.46253820452898	2.29690650562831	0.185102498025343	0.847598039221266	0.998431161219273
Merged-chr12-100053805-4	chr12	100053711	100053911	+	947.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164426, intron 2 of 2)	ORR1F|LTR|ERVL-MaLR	-58520.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141013251-2	chr7	141013151	141013351	+	550.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2507.0	NM_025378	66141.0	Mm.141021	NM_025378	ENSMUSG00000025492	Ifitm3	1110004C05Rik|Cd225|Cdw217|DSPA2b|Fgls|IP15|mil-1	interferon induced transmembrane protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-92697930-3	chr16	92697961	92698161	+	925.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009821)	promoter-TSS (NM_009821)	-732.0	NM_009821	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-161177902-1	chr2	161177802	161178002	+	688.5	f0_balb.idr	Intergenic	Intergenic	-68816.0	NR_126509	71389.0	Mm.122738	NM_173368	ENSMUSG00000057133	Chd6	5430439G14Rik|6330406J24Rik|CHD-6	chromodomain helicase DNA binding protein 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-82996015-2	chr6	82995915	82996115	+	565.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_033079, intron 4 of 9)	B2_Mm2|SINE|B2	37456.0	NM_010070	13448.0	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-58415466-4	chr15	58415354	58415554	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145959)	promoter-TSS (NM_145959)	-14.0	NM_145959	210998.0	Mm.3224	NM_145959	ENSMUSG00000037119	Fam91a1	AV220772|BC033609|D15Ertd621e|SKIN|mKIAA0493	family with sequence similarity 91, member A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-99565593-2	chr12	99565493	99565693	+	659.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_136760, intron 2 of 3)	intron (NR_136760, intron 2 of 3)	1752.0	NR_136760	102639404.0	Mm.396324	NR_136760	ENSMUSG00000097917	Gm26839	-	predicted gene, 26839	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-115422765-2	chr8	115422665	115422865	+	712.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	284129.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-92956812-4	chr1	92956706	92956906	+	960.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPEY4_LTR|LTR|ERVK	-6216.0	NR_015525	100037260.0	Mm.442236	NR_015525	ENSMUSG00000100632	9430060I03Rik	-	RIKEN cDNA 9430060I03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-85628759-2	chr18	85628659	85628859	+	763.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-677235.0	NM_025969	67105.0	Mm.250617	NM_025969	ENSMUSG00000024645	Timm21	1700034H14Rik|2700002I20Rik	translocase of inner mitochondrial membrane 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-24433616-4	chr16	24433509	24433709	+	939.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 1 of 12)	intron (NM_178665, intron 1 of 12)	-14482.0	NM_001145952	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-32375615-4	chr18	32375512	32375712	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045403, intron 1 of 2)	intron (NR_045403, intron 1 of 2)	-1605.0	NM_001083334	30948.0	Mm.4383	NM_009668	ENSMUSG00000024381	Bin1	ALP-1|Amphl|BRAMP-2|SH3P9	bridging integrator 1	protein-coding	3.8261506144977	2.38605762625658	3.3885272892587	3.96580724126157	3.52095462641169	3.53195483964513	3.31980105659616	3.98465216567482	0.124052267475961	0.829370010897136	0.998431161219273
Merged-chr17-37203768-4	chr17	37203665	37203865	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5799.0	NM_001011518	258219.0	Mm.377382	NM_001011518	ENSMUSG00000043827	Olfr94	MOR256-32P	olfactory receptor 94	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-149702844-5	chr4	149702676	149702876	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1147.0	NM_001029837	18707.0	Mm.229108	NM_008840	ENSMUSG00000039936	Pik3cd	2410099E07Rik|2610208K16Rik|AW545373|p110delta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding	6.5049516264797	5.75978758144478	5.86268270893648	5.40905488728881	5.20568707375503	5.11547701885778	6.00542485703096	5.05308457847156	-0.616180720634348	0.0525251552537643	0.33513824661535
Merged-chr11-117139334-4	chr11	117139274	117139474	+	745.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166507, intron 2 of 16)	intron (NM_001166507, intron 2 of 16)	24202.0	NM_001166506	74136.0	Mm.272312	NM_028777	ENSMUSG00000020823	Sec14l1	1200017E04Rik|2810012L19Rik|Naa-35	SEC14-like lipid binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91487565-2	chr16	91487465	91487665	+	635.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010508, intron 1 of 10)	intron (NM_010508, intron 1 of 10)	2350.0	NM_010508	15975.0	Mm.502	NM_010508	ENSMUSG00000022967	Ifnar1	Ifar|Ifnar|Ifrc|Infar	interferon (alpha and beta) receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-4989328-3	chr11	4989211	4989411	+	968.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001243044, intron 1 of 21)	intron (NM_001243044, intron 1 of 21)	2487.0	NM_001355660	11764.0	Mm.274816	NM_007454	ENSMUSG00000009090	Ap1b1	Adtb1|b2b1660Clo	adaptor protein complex AP-1, beta 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-68063653-4	chr10	68063575	68063775	+	780.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Charlie2b|DNA|hAT-Charlie	84105.0	NM_001359319	170799.0	Mm.209844	NM_133244	ENSMUSG00000037846	Rtkn2	B130039D23Rik|Mbf|Plekhk1	rhotekin 2	protein-coding	1.03679183819002	0.660813540233505	1.13796272605673	1.317028065971	1.15198574670974	0.663104841516561	1.37853308798797	0.64403350172628	-0.246404892818949	0.87313475497483	0.998431161219273
Merged-chr19-14595597-2	chr19	14595497	14595697	+	660.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001302950, exon 3 of 19)	exon (NM_001302950, exon 3 of 19)	1616.0	NM_001302951	21888.0	Mm.103638	NM_011600	ENSMUSG00000024642	Tle4	5730411M05Rik|AA792082|Bce-1|Bce1|ESTM13|ESTM14|Grg4|X83332|X83333|grg-4	transducin-like enhancer of split 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-14998785-3	chr9	14998687	14998887	+	896.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46691.0	NM_019482	55991.0	Mm.142253	NM_019482	ENSMUSG00000031934	Panx1	AI847747	pannexin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-66956967-2	chr10	66956867	66957067	+	787.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-36583.0	NR_138561	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-154593271-4	chr2	154593163	154593363	+	861.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021534, intron 2 of 3)	intron (NM_021534, intron 2 of 3)	10410.0	NM_021534	59038.0	Mm.24673	NM_021534	ENSMUSG00000000876	Pxmp4	3010018P03Rik|Pmp24	peroxisomal membrane protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80328369-2	chr10	80328269	80328469	+	862.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008793, intron 2 of 14)	ORR1D1|LTR|ERVL-MaLR	1104.0	NM_008793	18551.0	Mm.299916	NM_008793	ENSMUSG00000020131	Pcsk4	AI647044|L21221|NEC 3|NEC3|PC4|SPC5	proprotein convertase subtilisin/kexin type 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-46032653-7	chr17	46032499	46032699	+	766.3809809999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001287058)	promoter-TSS (NM_001287058)	-222.0	NM_001287057	22339.0	Mm.282184	NM_009505	ENSMUSG00000023951	Vegfa	Vegf|Vpf	vascular endothelial growth factor A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126495992-2	chr8	126495892	126496092	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-20927.0	NM_001159907	212728.0	Mm.482479	NM_001159907	ENSMUSG00000090290	Tarbp1	Gm17296|Gm179	TAR RNA binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-120982380-4	chr7	120982283	120982483	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007672)	promoter-TSS (NM_007672)	-71.0	NM_001354986	12585.0	Mm.1640	NM_007672	ENSMUSG00000030878	Cdr2	AA617262	cerebellar degeneration-related 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-107476952-2	chr11	107476852	107477052	+	841.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-2576.0	NM_025894	66997.0	Mm.491171	NM_025894	ENSMUSG00000020720	Psmd12	1500002F15Rik|AI480719|P55	proteasome (prosome, macropain) 26S subunit, non-ATPase, 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-14188087-4	chr10	14187880	14188080	+	917.0125119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F1|SINE|Alu	221601.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	0.424122825632131	0.299894808179818	0.293053118318412	0.59492986588357	0.667567278495242	1.03721196314432	0.294563425857738	0.723319661381701	2.03617596690338	0.262208615698955	1
Merged-chr2-11535585-4	chr2	11535471	11535671	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177758, intron 1 of 14)	CpG	18358.0	NM_001177758	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150613375-1	chr4	150613275	150613475	+	756.0	f1_c57bl6.idr	intron (NM_001085492, intron 15 of 22)	intron (NM_001085492, intron 15 of 22)	38799.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	1.15253345794129	0.637406211998591	0.615288164045682	2.40715683863056	1.00195996100411	2.11608765045399	0.620249569232218	0.600683590154843	-0.483394718947697	0.844492076972341	0.998431161219273
Merged-chr19-55814636-3	chr19	55814535	55814735	+	745.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001331146, intron 4 of 14)	intron (NM_001331146, intron 4 of 14)	72825.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-35037816-2	chr7	35037716	35037916	+	573.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008820, intron 12 of 14)	intron (NM_008820, intron 12 of 14)	18750.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-86843891-2	chr8	86843791	86843991	+	796.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_030563, exon 7 of 7)	3' UTR (NM_030563, exon 7 of 7)	41367.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80420823-4	chr10	80420748	80420948	+	986.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164153, intron 5 of 18)	intron (NM_001164153, intron 5 of 18)	12805.0	NM_001164150	21423.0	Mm.3406	NM_011548	ENSMUSG00000020167	Tcf3	A1|AA408400|ALF2|AW209082|E12|E12/E47|E2A|E47|KA1|ME2|Pan1|Pan2|TCF-3|Tcfe2a|VDIR|bHLHb21	transcription factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-100921649-2	chr3	100921549	100921749	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001165953)	promoter-TSS (NM_001165953)	-844.0	NM_001165952	229644.0	Mm.189351	NM_194343	ENSMUSG00000033233	Trim45	4921530N01Rik	tripartite motif-containing 45	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-26346847-4	chr4	26346736	26346936	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172865)	promoter-TSS (NM_172865)	-184.0	NM_172865	242362.0	Mm.245602	NM_172865	ENSMUSG00000040520	Manea	4932703L02Rik	mannosidase, endo-alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-33670431-4	chr1	33670334	33670534	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008922)	promoter-TSS (NM_008922)	610.0	NR_033199	67503.0	Mm.87069	NM_026204	ENSMUSG00000103746	1700001G17Rik	-	RIKEN cDNA 1700001G17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-4109058-4	chr8	4108936	4109136	+	823.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3272.0	NM_026956	69142.0	Mm.171061	NM_026956	ENSMUSG00000051906	Cd209f	1810029C22Rik|AI647041|SIGNR8	CD209f antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71294259-2	chr17	71294159	71294359	+	881.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357337, intron 2 of 7)	(TG)n|Simple_repeat|Simple_repeat	16752.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	0.614490051342319	0.494810239046905	0.940020712535087	1.01263560834495	0.61906570177031	0.496515870628444	0.949802963323453	1.01973733120995	0.035110275827271	0.982463919280785	1
Merged-chr2-164073124-2	chr2	164073024	164073224	+	791.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1054.0	NM_021420	58231.0	Mm.234472	NM_021420	ENSMUSG00000018209	Stk4	AI447339|AU020804|Kas-2|Mst1|Ysk3	serine/threonine kinase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-95338518-2	chr8	95338418	95338618	+	634.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133954, intron 2 of 6)	intron (NM_133954, intron 2 of 6)	6234.0	NM_133954	101985.0	Mm.29069	NM_133954	ENSMUSG00000031792	Usb1	AA960436	U6 snRNA biogenesis 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127051279-2	chr10	127051179	127051379	+	932.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010009, intron 7 of 8)	intron (NM_010009, intron 7 of 8)	3033.0	NM_010009	13115.0	Mm.6216	NM_010009	ENSMUSG00000006724	Cyp27b1	Cp2b|Cyp1|Cyp27b|Cyp40|P450c1|Pddr|Vdd1|Vddr|VddrI|Vdr	cytochrome P450, family 27, subfamily b, polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-99353370-2	chr5	99353270	99353470	+	840.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 3 of 3)	ORR1C1|LTR|ERVL-MaLR	-100443.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-115343791-4	chr6	115343689	115343889	+	976.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17162.0	NM_001127330	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-35087890-3	chr13	35087794	35087994	+	672.477783	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	79910.0	NR_153831	75197.0	Mm.234091	NR_153831	ENSMUSG00000113906	4930529N20Rik	-	RIKEN cDNA 4930529N20 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-46455553-2	chr17	46455453	46455653	+	553.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162864, intron 13 of 14)	CpG	-17076.0	NM_144856	108114.0	Mm.387538	NM_144856	ENSMUSG00000067144	Slc22a7	NLT|OAT2	solute carrier family 22 (organic anion transporter), member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21291358-4	chr9	21291256	21291456	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009878)	promoter-TSS (NM_009878)	-147.0	NM_009878	12581.0	Mm.29020	NM_009878	ENSMUSG00000096472	Cdkn2d	INK4d|p19|p19INK4d	cyclin dependent kinase inhibitor 2D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-138367909-1	chr4	138367809	138368009	+	685.0	f1_c57bl6.idr	promoter-TSS (NM_028176)	promoter-TSS (NM_028176)	46.0	NM_028176	72269.0	Mm.46182	NM_028176	ENSMUSG00000028755	Cda	2210401N16Rik	cytidine deaminase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-12370116-4	chr13	12370024	12370224	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25251.0	NM_144835	217995.0	Mm.171186	NM_144835	ENSMUSG00000050244	Heatr1	AA517551|B130016L12Rik|BC019693	HEAT repeat containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-150266697-2	chr1	150266597	150266797	+	558.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52720.0	NM_024458	20028.0	Mm.440883	NM_024458	ENSMUSG00000006007	Pdc	Rpr-1|Rpr1	phosducin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94917372-4	chr10	94917262	94917462	+	846.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018797, intron 2 of 30)	intron (NM_018797, intron 2 of 30)	27216.0	NM_018797	54712.0	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-122818610-2	chr6	122818510	122818710	+	829.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1574.0	NM_021899	60611.0	Mm.87142	NM_021899	ENSMUSG00000003154	Foxj2	Fhx	forkhead box J2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-83973937-3	chr17	83973846	83974046	+	668.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24606.0	NR_130994	78148.0	Mm.243918	NR_130994		8430430B14Rik	-	RIKEN cDNA 8430430B14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-101545805-2	chr6	101545698	101545898	+	705.375	f0_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11B|LTR|ERVK	-167901.0	NM_018884	55983.0	Mm.321654	NM_018884	ENSMUSG00000035357	Pdzrn3	1110020C07Rik|AI429718|AL023082|LNX3|SEMACAP3|Semcap3	PDZ domain containing RING finger 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-48261325-2	chr17	48261225	48261425	+	577.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-2970.0	NM_172623	224840.0	Mm.131234	NM_172623	ENSMUSG00000051682	Treml4	5031403H21Rik|BB137214|IDCP1|TLT-4|TLT4|Treml3	triggering receptor expressed on myeloid cells-like 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117234378-2	chr11	117234278	117234478	+	572.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113486, intron 2 of 11)	intron (NM_001113486, intron 2 of 11)	-31868.0	NM_001113487	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-112760846-4	chr6	112760740	112760940	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080448, intron 10 of 21)	intron (NM_080448, intron 10 of 21)	-64170.0	NM_001167730	58186.0	Mm.103812	NM_021385	ENSMUSG00000030254	Rad18	2810024C04Rik|Rad18sc	RAD18 E3 ubiquitin protein ligase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27030822-4	chr2	27030720	27030920	+	771.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2822.0	NM_001177627	227659.0	Mm.41203	NM_172659	ENSMUSG00000036067	Slc2a6	A330096C23|F630103L12Rik|Glut6|Glut9	solute carrier family 2 (facilitated glucose transporter), member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-163093095-2	chr2	163092995	163093195	+	576.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-3494.0	NM_026630	68236.0	Mm.33648	NM_026630	ENSMUSG00000070708	Gtsf1l	2410116G06Rik	gametocyte specific factor 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-46795818-4	chr7	46795782	46795982	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291075)	promoter-TSS (NM_001291075)	-1.0	NM_001005247	246694.0	Mm.379442	NM_178742	ENSMUSG00000014418	Hps5	AI646796|AL022647|C85120|haze|hz|maroon|mr|ru-2|ru2	HPS5, biogenesis of lysosomal organelles complex 2 subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-53566427-4	chr15	53566324	53566524	+	992.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177225, intron 4 of 4)	UCON29|DNA|PiggyBac?	47855.0	NR_039538	100628567.0		NR_039538	ENSMUSG00000104794	Mir28c	mmu-mir-28c	microRNA 28c	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-92007227-2	chr2	92007127	92007327	+	724.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011957, intron 1 of 11)	intron (NM_011957, intron 1 of 11)	16943.0	NM_011957	26427.0	Mm.10353	NM_011957	ENSMUSG00000027230	Creb3l1	Oasis	cAMP responsive element binding protein 3-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-80932752-4	chr18	80932656	80932856	+	897.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015805, intron 1 of 28)	MIR|SINE|MIR	1302.0	NM_001201569	50771.0	Mm.247138	NM_015805	ENSMUSG00000024566	Atp9b	AA934181|Atpc2b|IIb|MMR	ATPase, class II, type 9B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128412329-2	chr10	128412229	128412429	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026259, intron 1 of 7)	intron (NM_026259, intron 1 of 7)	713.0	NM_026259	67588.0	Mm.294120	NM_026259	ENSMUSG00000025373	Rnf41	2210404G21Rik|4930511A05Rik|4933415P08Rik|D10Ertd722e|FLRF|Nrdp1	ring finger protein 41	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-24551282-1	chr5	24551182	24551382	+	540.0	f1_balb.idr	intron (NR_033188, intron 5 of 17)	intron (NR_033188, intron 5 of 17)	4187.0	NR_033188	231045.0	Mm.255800	NM_177676	ENSMUSG00000038199	4931409K22Rik	Iqca1l|Iqca1p1	RIKEN cDNA 4931409K22 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-120470884-4	chr6	120470814	120471014	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008359, intron 1 of 12)	intron (NM_008359, intron 1 of 12)	7717.0	NM_008359	16172.0	Mm.4481	NM_008359	ENSMUSG00000002897	Il17ra	AW538159|Cdw217|Il17r|VDw217	interleukin 17 receptor A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-74831388-4	chr11	74831303	74831503	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010813, intron 1 of 5)	CpG-2219	479.0	NM_010813	17428.0	Mm.3759	NM_010813	ENSMUSG00000000282	Mnt	Rox|bHLHd3	max binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120539163-4	chr11	120539052	120539252	+	916.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008101)	TTS (NM_008101)	8425.0	NM_008101	14527.0	Mm.22329	NM_008101	ENSMUSG00000025127	Gcgr	GR	glucagon receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-84187198-4	chr17	84187102	84187302	+	878.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001806, intron 1 of 1)	CpG	745.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-63413081-4	chr14	63412989	63413189	+	737.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007549, intron 1 of 12)	intron (NM_007549, intron 1 of 12)	4098.0	NM_007549	12143.0	Mm.3962	NM_007549	ENSMUSG00000014453	Blk	-	B lymphoid kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31397287-2	chr14	31397187	31397387	+	843.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347585, intron 2 of 7)	intron (NM_001347585, intron 2 of 7)	20390.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16255112-2	chr7	16255012	16255212	+	975.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001173550, intron 1 of 1)	intron (NM_001173550, intron 1 of 1)	4226.0	NM_001173550	12273.0	Mm.247623	NM_007577	ENSMUSG00000049130	C5ar1	C5aR|C5r1|Cd88|D7Msu1	complement component 5a receptor 1	protein-coding	-0.232503612319651	-0.212210724299092	-0.21878069316333	-0.223900790282034	-0.231215509572845	0.824324515830648	-0.217325294756308	0.397252493979278	4.09325822219098	0.0844028565709969	1
Merged-chr11-21265615-4	chr11	21265525	21265725	+	793.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290628, intron 3 of 22)	intron (NM_001290628, intron 3 of 22)	26593.0	NM_001290628	245944.0	Mm.170103	NM_139061	ENSMUSG00000020128	Vps54	Hcc8|Vps54l|mSLP8|wr	VPS54 GARP complex subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-11150168-2	chr4	11150068	11150268	+	611.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6273.0	NM_001199105	60599.0	Mm.393018	NM_021897	ENSMUSG00000028211	Trp53inp1	2700057G22Rik|SIP|SIP18|SIP27|Stinp|Teap|p53DINP1	transformation related protein 53 inducible nuclear protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-76771416-4	chr11	76771323	76771523	+	870.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7845.0	NM_001356321	53334.0	Mm.20931	NM_016810	ENSMUSG00000010392	Gosr1	AI414660|AI426320|BB145494|GOS-28|GOSRI|GS28	golgi SNAP receptor complex member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71441565-2	chr8	71441487	71441687	+	886.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22070.0	NM_022419	64296.0	Mm.276383	NM_022419	ENSMUSG00000007950	Abhd8	0910001L24Rik|AB030191	abhydrolase domain containing 8	protein-coding	0.653846631642869	0.710189822595197	1.29590057264088	0.678195714891513	1.92720609837205	1.36526041000559	0.696335749650571	2.04948045349362	2.9328304677669	0.0562238973163026	0.349762004839785
Merged-chr2-167959601-2	chr2	167959501	167959701	+	698.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011201, intron 1 of 8)	intron (NM_011201, intron 1 of 8)	27274.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-132104238-2	chr2	132104138	132104338	+	875.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355430, intron 1 of 15)	B3A|SINE|B2	40870.0	NM_001355431	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-21644185-3	chr19	21644113	21644313	+	811.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025423, intron 1 of 3)	intron (NM_025423, intron 1 of 3)	8578.0	NM_025423	66206.0	Mm.272430	NM_025423	ENSMUSG00000035171	1110059E24Rik	-	RIKEN cDNA 1110059E24 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-54691990-2	chr3	54691890	54692090	+	751.666687	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_152184)	promoter-TSS (NR_152184)	-825.0	NR_152185	56790.0	Mm.486375	NM_019995	ENSMUSG00000027751	Supt20	AA667204|AI450544|D3Ertd300e|Fam48a|Supt20h|p38IP	suppressor of Ty 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-4529488-2	chr5	4529388	4529588	+	635.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	228728.0	NM_021457	14362.0	Mm.246003	NM_021457	ENSMUSG00000044674	Fzd1	AW227548|FZ-1|Fz1	frizzled class receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-99171490-3	chr10	99171364	99171564	+	914.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153333, intron 11 of 12)	intron (NR_153333, intron 11 of 12)	63329.0	NM_015737	14426.0	Mm.314	NM_015737	ENSMUSG00000090035	Galnt4	AV011803	polypeptide N-acetylgalactosaminyltransferase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-90214763-2	chr9	90214663	90214863	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 10 of 12)	intron (NM_194334, intron 10 of 12)	51785.0	NM_001311115	108153.0	Mm.102141	NM_001003911	ENSMUSG00000032363	Adamts7	ADAM-TS7|ADAMTS7B	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-59230584-4	chr7	59230466	59230666	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033962, intron 1 of 10)	intron (NM_001033962, intron 1 of 10)	1816.0	NM_173010	22215.0	Mm.9002	NM_011668	ENSMUSG00000025326	Ube3a	4732496B02|5830462N02Rik|A130086L21Rik|Hpve6a	ubiquitin protein ligase E3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-132064166-4	chr3	132064068	132064268	+	935.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21124.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	0.234763780197264	0.249703455574896	0.244762008587488	0.725940398400124	0.23568377517186	0.250823576218713	0.93371841066565	0.732261445116162	1.43353872128954	0.495697877804871	1
Merged-chr11-43351004-2	chr11	43350904	43351104	+	659.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23457.0	NR_029558	387164.0		NR_029558	ENSMUSG00000065601	Mir146	Mirn146|miR-146a|mmu-mir-146	microRNA 146	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-37654466-4	chr16	37654358	37654558	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026610)	promoter-TSS (NM_026610)	-90.0	NM_026610	68194.0	Mm.379154	NM_026610	ENSMUSG00000022820	Ndufb4	0610006N12Rik|1300010H20Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-72225293-4	chr5	72225211	72225411	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_003966, intron 1 of 22)	intron (NR_003966, intron 1 of 22)	21968.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70002081-2	chr11	70001981	70002181	+	939.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007888, intron 1 of 14)	B3|SINE|B2	1455.0	NM_007888	13543.0	Mm.5114	NM_007888	ENSMUSG00000020888	Dvl2	-	dishevelled segment polarity protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-170349140-2	chr2	170349040	170349240	+	939.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029815, intron 12 of 12)	intron (NM_029815, intron 12 of 12)	-7221.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-46080942-2	chr11	46080842	46081042	+	708.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291890, intron 3 of 22)	MLT1C|LTR|ERVL-MaLR	-21328.0	NR_106177	102465996.0		NR_106177	ENSMUSG00000098942	Mir8100	Gm27638|mmu-mir-8100	microRNA 8100	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-94979669-3	chr4	94979585	94979785	+	883.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177239)	promoter-TSS (NM_177239)	-585.0	NM_177239	320713.0	Mm.208868	NM_177239	ENSMUSG00000062627	Mysm1	C130067A03Rik|C530050H10Rik	myb-like, SWIRM and MPN domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-37049538-3	chr8	37049431	37049631	+	758.244446	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER4A|LTR|ERVK	-25293.0	NR_126063	414128.0	Mm.450976	NR_126063	ENSMUSG00000110242	G630064G18Rik	-	RIKEN cDNA G630064G18 gene	ncRNA	1.67319229076626	1.88689430786125	2.31591726840524	1.28871490870305	2.78748742712018	3.33925934686605	2.86797048264979	2.25879599777728	2.27141902662027	0.00986509415278083	0.108059707527448
Merged-chr5-123723347-1	chr5	123723247	123723447	+	576.0	f1_c57bl6.idr	Intergenic	Intergenic	-2303.0	NM_027494	70650.0	Mm.279427	NM_027494	ENSMUSG00000029427	Zcchc8	5730565F05Rik	zinc finger, CCHC domain containing 8	protein-coding	-0.307401436429068	-0.744729300782656	-0.438324722139528	-0.749774720358621	-0.615272603736933	-0.744083893175363	-0.746955094149803	-0.749392535173928	-2.11475566391247	0.447392082387855	1
Merged-chr1-178527327-2	chr1	178527227	178527427	+	804.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1798.0	NM_001161665	269152.0	Mm.129727	NM_177724	ENSMUSG00000026494	Kif26b	4832420M10|BC056349|D230039L06Rik	kinesin family member 26B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-102656908-2	chr13	102656808	102657008	+	754.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36639.0	NM_001360519	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-59653555-4	chr9	59653448	59653648	+	946.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2820.0	NM_001253883	18746.0	Mm.326167	NM_011099	ENSMUSG00000032294	Pkm	AA414905|AL024370|AL024424|Pk-2|Pk-3|Pk3|Pkm2	pyruvate kinase, muscle	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80143751-2	chr10	80143651	80143851	+	978.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347092, intron 1 of 2)	intron (NM_001347092, intron 1 of 2)	1436.0	NM_025313	66043.0	Mm.278560	NM_025313	ENSMUSG00000003072	Atp5d	0610008F14Rik|1500000I11Rik|AA960090|AI876556|AU020773|Atp5f1d|C85518	ATP synthase, H+ transporting, mitochondrial F1 complex, delta subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-95309730-4	chr11	95309622	95309822	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_155298)	promoter-TSS (NR_155298)	524.0	NM_001195004	217127.0	Mm.90213	NM_177619	ENSMUSG00000038909	Kat7	Hbo1|Hboa|Myst2	K(lysine) acetyltransferase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-43866779-4	chr5	43866647	43866847	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2062.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-24918655-1	chr5	24918555	24918755	+	654.5	f0_balb.idr	intron (NM_145401, intron 4 of 15)	CT-rich|Low_complexity|Low_complexity	-10146.0	NM_001170555	108099.0	Mm.33649	NM_145401	ENSMUSG00000028944	Prkag2	2410051C13Rik|AAKG|AAKG2|AI854673|H91620p|WPWS	protein kinase, AMP-activated, gamma 2 non-catalytic subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-120099111-4	chr2	120099006	120099206	+	994.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133838, intron 4 of 5)	intron (NM_133838, intron 4 of 5)	55469.0	NM_133838	98878.0	Mm.132226	NM_133838	ENSMUSG00000027293	Ehd4	2210022F10Rik|AI197390|AI846352|AV006278|Past2	EH-domain containing 4	protein-coding	2.80769030023285	2.54265153309383	2.57891100564427	2.39537884337797	2.50525453282486	2.26561453233243	2.70562033458289	2.72112797213978	-0.0598372773416149	0.935357899955266	0.998431161219273
Merged-chr16-11016576-2	chr16	11016476	11016676	+	847.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7678.0	NR_040518	100043147.0	Mm.489001	NR_040518	ENSMUSG00000097056	Gm4262	-	predicted gene 4262	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-127024675-2	chr4	127024575	127024775	+	761.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023603, intron 4 of 9)	PB1D9|SINE|Alu	3374.0	NM_023603	71514.0	Mm.257276	NM_023603	ENSMUSG00000028820	Sfpq	1110004P21Rik|2810416M14Rik|5730453G22Rik|9030402K04Rik|AU021830|D4Ertd314e|Gm12940|PSF|REP1	splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-114644732-4	chr6	114644623	114644823	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028835, intron 1 of 18)	intron (NM_028835, intron 1 of 18)	1626.0	NM_001253718	74244.0	Mm.275332	NM_028835	ENSMUSG00000030314	Atg7	1810013K23Rik|Agp7|Apg7l|Atg7l|Gm21553	autophagy related 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-63400862-3	chr17	63400778	63400978	+	712.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015794, intron 4 of 8)	Lx7|LINE|L1	-87905.0	NR_130176	414079.0	Mm.444282	NR_130176	ENSMUSG00000090565	4930405O22Rik	-	RIKEN cDNA 4930405O22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-84663549-1	chr4	84663449	84663649	+	545.0	f1_c57bl6.idr	intron (NM_172870, intron 1 of 5)	Lx5c|LINE|L1	11537.0	NM_172870	242509.0	Mm.190774	NM_172870	ENSMUSG00000028487	Bnc2	5031434M05Rik|8430420F16Rik	basonuclin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-143626431-2	chr7	143626331	143626531	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175649, intron 1 of 7)	intron (NM_175649, intron 1 of 7)	1414.0	NM_175649	244237.0	Mm.247498	NM_175649	ENSMUSG00000045362	Tnfrsf26	Tnfrh3|Tnfrsf24	tumor necrosis factor receptor superfamily, member 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-17756988-4	chr14	17756870	17757070	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113417, intron 1 of 9)	intron (NM_001113417, intron 1 of 9)	96010.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-10457210-4	chr10	10457111	10457311	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127353, intron 1 of 36)	intron (NM_001127353, intron 1 of 36)	15103.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	7.48790830519711	7.07208028490126	7.05165753285843	7.16371596526196	6.80978676431546	7.14406084839618	6.68488450184542	6.63540555843884	-0.402287423937678	0.0284270650178643	0.228597805686552
Merged-chr8-34147171-4	chr8	34147031	34147231	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026609)	promoter-TSS (NM_026609)	-392.0	NM_026609	68192.0	Mm.34212	NM_026609	ENSMUSG00000031513	Leprotl1	1110067H13Rik|1520402O14Rik|AI854296	leptin receptor overlapping transcript-like 1	protein-coding	3.55341892021866	3.96558230864254	3.29226333059469	3.45859972521691	2.85086110979258	3.2128944495831	4.2459109396536	3.30821273911505	-0.11050622346633	0.846705653990952	0.998431161219273
Merged-chr17-26531757-4	chr17	26531629	26531829	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23257.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-64178664-1	chr15	64178564	64178764	+	788.333313	f0_balb.idr	intron (NM_001276461, intron 5 of 28)	intron (NM_001276461, intron 5 of 28)	-118216.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-82035455-4	chr11	82035373	82035573	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011333)	promoter-TSS (NM_011333)	-104.0	NM_011333	20296.0	Mm.290320	NM_011333	ENSMUSG00000035385	Ccl2	AI323594|HC11|JE|MCAF|MCP-1|MCP1|SMC-CF|Scya2|Sigje	chemokine (C-C motif) ligand 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67318183-3	chr10	67318067	67318267	+	804.916687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32886.0	NM_001036293	641340.0	Mm.136223	NM_001036293	ENSMUSG00000075000	Nrbf2	NRBF-2	nuclear receptor binding factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84975003-4	chr8	84974905	84975105	+	987.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011563)	TTS (NM_011563)	3743.0	NM_008416	16477.0	Mm.1167	NM_008416	ENSMUSG00000052837	Junb	-	jun B proto-oncogene	protein-coding	4.07315815834342	4.30658481160321	4.28837943002529	4.33467054842789	4.68306360703504	4.39990575729142	3.99163818613359	5.04591486841722	0.438359720716797	0.276198799747039	0.780337488076526
Merged-chr16-19973654-4	chr16	19973540	19973740	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183390, intron 1 of 6)	intron (NM_183390, intron 1 of 6)	9409.0	NM_183390	239743.0	Mm.86699	NM_183390	ENSMUSG00000043008	Klhl6	-	kelch-like 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-99211143-4	chr10	99211065	99211265	+	932.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC4|LINE|L1	-52066.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19468505-4	chr7	19468406	19468606	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10012.0	NM_172279	232944.0	Mm.260504	NM_172279	ENSMUSG00000030397	Mark4	2410090P21Rik|C79806|Markl1	MAP/microtubule affinity regulating kinase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-79097687-4	chr10	79097580	79097780	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359717)	promoter-TSS (NM_001359717)	-80.0	NM_001004362	72128.0	Mm.297854	NM_001004362	ENSMUSG00000060301	2610008E11Rik	-	RIKEN cDNA 2610008E11 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-106241624-3	chr1	106241531	106241731	+	856.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133821, intron 1 of 16)	intron (NM_133821, intron 1 of 16)	69762.0	NM_133821	98432.0	Mm.24115	NM_133821	ENSMUSG00000044340	Phlpp1	AI836256|Phlpp|Plekhe1|SCOP|mKIAA0606	PH domain and leucine rich repeat protein phosphatase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-83155892-2	chr15	83155792	83155992	+	795.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_029787, intron 8 of 8)	intron (NM_029787, intron 8 of 8)	6247.0	NR_004432	104307.0	Mm.471434	NR_004432	ENSMUSG00000065176	Rnu12	-	RNA U12, small nuclear	snRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65570974-3	chr9	65570952	65571152	+	668.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153119, intron 2 of 5)	B4|SINE|B4	9035.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	0.400741027147061	0.865494061676204	0.150144000889229	0.145636324087055	0.407384863004726	0.351090359035993	0.478596424019903	0.146423796105695	-0.566359343018306	0.765149900183468	1
Merged-chr1-183350041-4	chr1	183349952	183350152	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177389, intron 6 of 26)	intron (NM_177389, intron 6 of 26)	19513.0	NM_177389	338366.0	Mm.41152	NM_177389		Mia3	9130229H14Rik|A930039G15Rik|AU022327|B230399H06Rik|C80126|Gm1525|TANGO1|Tango	melanoma inhibitory activity 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44335152-4	chr9	44335052	44335252	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010436, exon 1 of 1)	exon (NM_010436, exon 1 of 1)	437.0	NM_010436	15270.0	Mm.245931	NM_010436	ENSMUSG00000049932	H2afx	AW228881|H2A.X|H2ax|Hist5-2ax|gammaH2ax	H2A histone family, member X	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80376373-4	chr10	80376268	80376468	+	945.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6731.0	NR_038088	100568459.0		NR_038088	ENSMUSG00000115783	Bc1	Gm24367	brain cytoplasmic RNA 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-16950139-4	chr11	16950048	16950248	+	899.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110421, intron 2 of 5)	MTD|LTR|ERVL-MaLR	1134.0	NR_110421	72735.0	Mm.268598	NR_015469		Eldr	2810442I21Rik|4930500E12Rik|Fabl	Egfr long non-coding downstream RNA	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-51935852-2	chr11	51935752	51935952	+	647.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31779.0	NM_029976	52626.0	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70835077-1	chr8	70834977	70835177	+	558.0	f1_c57bl6.idr	TTS (NM_027560)	TTS (NM_027560)	4643.0	NM_027560	70807.0	Mm.24215	NM_027560	ENSMUSG00000002910	Arrdc2	4632416I05Rik|Ilad1	arrestin domain containing 2	protein-coding	0.805177263604935	1.07435392487874	0.527862293416473	1.10544834288051	0.812950699287999	0.539981159965276	1.461303148298	0.521501979599512	0.0420278671814972	0.979240967174483	0.998431161219273
Merged-chr10-127286730-2	chr10	127286630	127286830	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347171, intron 5 of 12)	intron (NM_001347171, intron 5 of 12)	2288.0	NM_001347171	110962.0	Mm.372826	NM_033072	ENSMUSG00000025409	Mbd6	D10Wsu93e	methyl-CpG binding domain protein 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30676766-2	chr2	30676666	30676866	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_136917, intron 1 of 3)	intron (NR_136917, intron 1 of 3)	1245.0	NR_136917	665635.0	Mm.450149	NR_136917		Gm14486	-	predicted gene 14486	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-66821976-1	chr4	66821876	66822076	+	662.0	f0_balb.idr	Intergenic	Intergenic	-5575.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59735875-2	chr15	59735775	59735975	+	743.416626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	59084.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	-0.313688332661025	-0.29825075059902	0.584669929201128	-0.307188521087762	-0.156131554508291	-0.297117672752338	0.0506225069333425	-0.306506404183844	-1.29571660143413	0.592185149686851	1
Merged-chr11-85141363-2	chr11	85141263	85141463	+	970.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1408.0	NM_001029934	237898.0	Mm.178524	NM_001029934	ENSMUSG00000000804	Usp32	2900074J03Rik|6430526O11Rik|AW045245	ubiquitin specific peptidase 32	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-106149317-2	chr1	106149217	106149417	+	614.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22207.0	NR_040630	626049.0	Mm.247410	NR_040630	ENSMUSG00000101583	Gm20753	-	predicted gene, 20753	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101274284-2	chr15	101274184	101274384	+	834.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010444, exon 7 of 7)	3' UTR (NM_010444, exon 7 of 7)	7438.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-46347577-4	chr5	46347490	46347690	+	714.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-415181.0	NR_110478	78106.0	Mm.243807	NR_110478	ENSMUSG00000106602	4930405L22Rik	-	RIKEN cDNA 4930405L22 gene	ncRNA	-0.960390792656608	-0.945092283064693	-0.51205148690456	-0.797522841581001	-0.959898276136893	-0.94256794196981	-0.778612973387732	-0.956721639405279	-1.73844723541494	0.552178390831383	1
Merged-chr9-70654661-2	chr9	70654561	70654761	+	766.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172772, intron 1 of 8)	MTEa|LTR|ERVL-MaLR	2513.0	NM_172772	235461.0	Mm.170855	NM_172772	ENSMUSG00000042444	Mindy2	AI465301|B230380D07Rik|Fam63b|mKIAA1164	MINDY lysine 48 deubiquitinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-120469911-4	chr6	120469766	120469966	+	961.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008359, intron 1 of 12)	intron (NM_008359, intron 1 of 12)	6669.0	NM_008359	16172.0	Mm.4481	NM_008359	ENSMUSG00000002897	Il17ra	AW538159|Cdw217|Il17r|VDw217	interleukin 17 receptor A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120312602-1	chr8	120312502	120312702	+	559.0	f0_balb.idr	Intergenic	Intergenic	-84372.0	NR_110496	434353.0	Mm.411793	NR_110496	ENSMUSG00000097960	A330074K22Rik	-	RIKEN cDNA A330074K22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35260176-2	chr17	35260076	35260276	+	628.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MERVK26-int|LTR|ERVK	-2918.0	NM_010380	14964.0	Mm.439675	NM_010380	ENSMUSG00000073411	H2-D1	H-2D|H2-D	histocompatibility 2, D region locus 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80876111-4	chr10	80875927	80876127	+	787.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3789.0	NM_001081688	432478.0	Mm.235302	NM_001081688	ENSMUSG00000059406	Tmprss9	Serase-1B	transmembrane protease, serine 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-73547807-2	chr12	73547707	73547907	+	754.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_044985)	promoter-TSS (NR_044985)	-676.0	NR_044985	73644.0	Mm.369885	NR_044985	ENSMUSG00000113800	2210039B01Rik	-	RIKEN cDNA 2210039B01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-117242254-4	chr13	117242157	117242357	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010330, intron 2 of 8)	intron (NM_010330, intron 2 of 8)	21684.0	NM_010330	13723.0	Mm.274926	NM_010330	ENSMUSG00000021728	Emb	AL022799|Gp70	embigin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-76513209-4	chr6	76513105	76513305	+	942.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-729272.0	NR_155299	74342.0	Mm.292568	NM_028880	ENSMUSG00000060780	Lrrtm1	4632401D06Rik|AW125451	leucine rich repeat transmembrane neuronal 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96564001-2	chr3	96563875	96564075	+	797.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_040409, intron 1 of 3)	ID_B1|SINE|B4	2826.0	NR_040409	100038464.0	Mm.475126	NR_040409	ENSMUSG00000074398	Gm15441	-	predicted gene 15441	ncRNA	1.13735313969785	1.26860069872255	1.80084382753138	1.45161894237628	1.5751321025693	0.871711836998077	1.38275712628456	0.846504894689433	-0.854027241837521	0.519099769782432	0.947641799425091
Merged-chr9-89211443-3	chr9	89211321	89211521	+	731.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359993)	promoter-TSS (NM_001359993)	37.0	NM_001359993	107885.0	Mm.486274	NM_026829	ENSMUSG00000066442	Mthfs	1110034I12Rik|2310020H23Rik|AI119695	5, 10-methenyltetrahydrofolate synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36127821-4	chr1	36127702	36127902	+	631.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16511.0	NR_105862	102465540.0		NR_105862	ENSMUSG00000098752	Mir6897	Gm27652|mmu-mir-6897	microRNA 6897	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-19078292-4	chr10	19078203	19078403	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62893.0	NM_009397	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	4.72430161632211	4.80511024345871	5.4423407845591	5.19335024030261	5.52317043321008	5.31314866419958	5.61390585985717	5.54525988311529	0.504604323214589	0.0889382244741996	0.45981649694403
Merged-chr15-100494576-2	chr15	100494483	100494683	+	727.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153407, intron 1 of 4)	intron (NM_153407, intron 1 of 4)	656.0	NM_153407	207785.0	Mm.294969	NM_153407	ENSMUSG00000044636	Csrnp2	CSRNP-2|Csnrp2|taip-12	cysteine-serine-rich nuclear protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-111055567-2	chr9	111055467	111055667	+	748.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_001302376, exon 3 of 3)	exon (NM_001302376, exon 3 of 3)	1677.0	NM_001302377	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-3237025-2	chr16	3237101	3237301	+	703.200012	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-355197.0	NM_146860	258859.0	Mm.377723	NM_146860	ENSMUSG00000051003	Olfr161	MOR131-1|OR912-47M6	olfactory receptor 161	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-60808459-2	chr2	60808359	60808559	+	619.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001141932, intron 2 of 14)	intron (NM_001141932, intron 2 of 14)	72979.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-92253026-1	chr1	92252926	92253126	+	802.0	f1_c57bl6.idr	Intergenic	Intergenic	-72685.0	NM_207225	208727.0	Mm.318567	NM_207225	ENSMUSG00000026313	Hdac4	4932408F19Rik|HD4	histone deacetylase 4	protein-coding	0.193722489410266	-0.261444576794218	-0.26589942460309	0.442649301432769	-0.128797186714869	-0.260439813797243	-0.264917229398394	-0.26873390297791	-2.86349381296186	0.237054968827845	1
Merged-chr7-19418138-1	chr7	19418038	19418238	+	679.0	f1_c57bl6.idr	non-coding (NR_073014, exon 4 of 4)	non-coding (NR_073014, exon 4 of 4)	3279.0	NR_073014	100503495.0	Mm.410762	NR_073014	ENSMUSG00000040705	A930016O22Rik	-	RIKEN cDNA A930016O22 gene	ncRNA	1.19821500013967	0.696545481557199	1.70585155149937	1.15658876621745	1.2099615100459	0.699172420532809	0.687400049197198	1.16347184417061	-1.18308182855236	0.429144146037134	0.903416445927044
Merged-chr11-94653873-4	chr11	94653749	94653949	+	992.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177752)	promoter-TSS (NM_177752)	58.0	NM_053161	94064.0	Mm.34951	NM_053161	ENSMUSG00000024414	Mrpl27	A630055F16Rik|D11Moh47|D18Ertd643e	mitochondrial ribosomal protein L27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81809527-2	chr15	81809427	81809627	+	692.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153484, intron 1 of 3)	intron (NM_153484, intron 1 of 3)	-1887.0	NM_017376	21685.0	Mm.270278	NM_017376	ENSMUSG00000022389	Tef	2310028D20Rik	thyrotroph embryonic factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-10977638-2	chr16	10977538	10977738	+	856.900024	f1_balb.idr|f1_c57bl6.idr	intron (NM_019980, intron 1 of 3)	intron (NM_019980, intron 1 of 3)	15483.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-72082610-3	chr9	72082505	72082705	+	658.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011544, intron 3 of 20)	intron (NM_011544, intron 3 of 20)	28596.0	NM_001253862	21406.0	Mm.171615	NM_011544	ENSMUSG00000032228	Tcf12	A130037E08Rik|ALF1|HEB|HEBAlt|HTF-4|HTF4|ME1|REB|bHLHb20	transcription factor 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80294335-4	chr7	80294244	80294444	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285998)	promoter-TSS (NM_001285998)	-107.0	NM_145150	233406.0	Mm.227274	NM_145150	ENSMUSG00000038943	Prc1	D7Ertd348e	protein regulator of cytokinesis 1	protein-coding	4.85210907771664	4.57658258408093	4.27754167562593	3.70414423845099	4.27844398342362	4.83539148216132	2.4327281975422	3.87244084815042	-0.414628438114664	0.438226048476843	0.908612234382228
Merged-chr18-80155099-2	chr18	80154999	80155199	+	603.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1-int|LTR|ERVL-MaLR	-3617.0	NM_175028	240442.0	Mm.26594	NM_175028	ENSMUSG00000053950	Adnp2	8430420L05Rik|BC024969|Kiaa0863|Zfp508|mKIAA0863	ADNP homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-50670893-3	chr9	50670784	50670984	+	906.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178118, intron 17 of 19)	B3|SINE|B2	-11104.0	NM_145614	235339.0	Mm.285076	NM_145614	ENSMUSG00000000168	Dlat	6332404G05Rik|DLTA|PDC-E2	dihydrolipoamide S-acetyltransferase (E2 component of pyruvate dehydrogenase complex)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75461465-4	chr11	75461386	75461586	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_030711)	promoter-TSS (NR_030711)	-53.0	NR_030711	100042498.0	Mm.482242	NR_030711	ENSMUSG00000085148	Mir22hg	2210403K04Rik|mir-22	Mir22 host gene (non-protein coding)	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-84222224-2	chr12	84222124	84222324	+	707.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D11|SINE|Alu	-3343.0	NM_001163501	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-59439276-2	chr2	59439176	59439376	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45377.0	NM_029723	76747.0	Mm.275769	NM_029723	ENSMUSG00000026989	Dapl1	2310032F03Rik|EEDA	death associated protein-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-94629115-2	chr16	94629015	94629215	+	832.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113389, intron 2 of 11)	intron (NM_001113389, intron 2 of 11)	17696.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25120609-4	chr7	25120499	25120699	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163555, intron 4 of 13)	intron (NM_001163555, intron 4 of 13)	11861.0	NM_011138	18987.0	Mm.76683	NM_011138	ENSMUSG00000008496	Pou2f2	Oct-2|Oct2a|Oct2b|Oct2c|Oct2d|Otf-2|Otf2	POU domain, class 2, transcription factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125161002-2	chr6	125160902	125161102	+	776.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_008084)	TTS (NM_008084)	4771.0	NM_008084	14433.0	Mm.304088	NM_008084	ENSMUSG00000057666	Gapdh	Gapd	glyceraldehyde-3-phosphate dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-53646868-2	chr19	53646768	53646968	+	550.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30438.0	NM_001170847	73713.0	Mm.313695	NM_001170847	ENSMUSG00000043639	Rbm20	1110018J23Rik|2010003H22Rik|AI646761	RNA binding motif protein 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-83726915-2	chr7	83726815	83727015	+	550.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360088, intron 1 of 18)	C-rich|Low_complexity|Low_complexity	5483.0	NM_001360087	16170.0	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	-0.0893686331486467	-0.463391463172037	-0.467604602900762	-0.470858557392463	0.340611866815279	-0.462442436814302	-0.46667494038982	-0.470289882897282	1.42140402867805	0.603598116885472	1
Merged-chr1-64534906-2	chr1	64534806	64535006	+	622.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037726, intron 1 of 6)	intron (NM_001037726, intron 1 of 6)	2102.0	NM_001037726	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-29892525-4	chr5	29892414	29892614	+	950.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-120600.0	NM_001314054	16193.0	Mm.1019	NM_031168	ENSMUSG00000025746	Il6	Il-6	interleukin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-55443994-2	chr13	55443894	55444094	+	628.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1078.0	NM_001286063	26385.0	Mm.10193	NM_011938	ENSMUSG00000074886	Grk6	Gprk6	G protein-coupled receptor kinase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117517965-2	chr8	117517865	117518065	+	890.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172285, intron 2 of 32)	intron (NM_172285, intron 2 of 32)	19690.0	NM_172285	234779.0	Mm.192699	NM_172285	ENSMUSG00000034330	Plcg2	PLC-gamma-2|PLCgamma2|Plcg-2	phospholipase C, gamma 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-56691866-1	chr8	56691766	56691966	+	848.0	f0_balb.idr	Intergenic	Intergenic	140732.0	NM_015791	50753.0	Mm.251174	NM_015791	ENSMUSG00000038206	Fbxo8	Fbx8	F-box protein 8	protein-coding	-1.05877568042897	-1.03501312238488	-1.04817210678232	-1.05426068996071	-1.05810152525527	-1.03216151557194	-0.188696606725984	-1.05378786495764	3.16074139804981	0.330468818528456	1
Merged-chr1-34856560-2	chr1	34856460	34856660	+	696.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357425, intron 2 of 8)	RLTR28|LTR|ERVL	6571.0	NM_001357425	226971.0	Mm.292751	NM_145516	ENSMUSG00000026123	Plekhb2	2310009M15Rik|AU018239|Evt2|Phdc|evt-2	pleckstrin homology domain containing, family B (evectins) member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119227673-4	chr11	119227567	119227767	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175430)	promoter-TSS (NM_175430)	832.0	NM_001347625	207592.0	Mm.205263	NM_172443	ENSMUSG00000039976	Tbc1d16	B930087K01|BC026530|Tcd1d16	TBC1 domain family, member 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52258636-4	chr13	52258549	52258749	+	858.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	161908.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-69007227-4	chr8	69007137	69007337	+	853.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-81499.0	NM_007509	11966.0	Mm.249096	NM_007509	ENSMUSG00000006273	Atp6v1b2	AI194269|AI790362|Atp6b2|HO57|R74844	ATPase, H+ transporting, lysosomal V1 subunit B2	protein-coding	3.40608210863056	3.53553622174363	3.61840405354622	2.68668822416984	3.18653209554701	2.75143321709836	2.5088375388822	2.07603210474963	-1.14030701142749	0.0900229328624709	0.463560149563917
Merged-chr13-117026983-2	chr13	117026883	117027083	+	653.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1467.0	NM_001081009	52552.0	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-122924318-4	chr3	122924229	122924429	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_046036)	promoter-TSS (NR_046036)	-68.0	NM_024461	67704.0	Mm.24219	NM_024461	ENSMUSG00000054091	1810037I17Rik	5730414I01Rik|Aln	RIKEN cDNA 1810037I17 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-106016829-3	chr12	106016725	106016925	+	969.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029843, intron 1 of 13)	intron (NM_001029843, intron 1 of 13)	6562.0	NM_001029843	22367.0	Mm.2981	NM_011705	ENSMUSG00000021115	Vrk1	51PK	vaccinia related kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-59336379-2	chr2	59336279	59336479	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 12 of 20)	intron (NM_175464, intron 12 of 20)	50303.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3771893-7	chr4	3771774	3771974	+	810.9571530000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 10 of 12)	intron (NM_001111096, intron 10 of 12)	56910.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-49244656-1	chr15	49244556	49244756	+	546.0	f1_c57bl6.idr	Intergenic	MTA_Mm-int|LTR|ERVL-MaLR	-452667.0	NM_001081391	239420.0	Mm.309363	NM_001081391	ENSMUSG00000022311	Csmd3	4930500N14Rik|mKIAA1894	CUB and Sushi multiple domains 3	protein-coding	-0.208405421711035	-0.460784357563156	-0.288601936744959	0.243264703536814	-0.471832537495639	-0.459912031267122	-0.463798357680788	-0.467109195516482	-3.49213478932006	0.163075074913118	1
Merged-chr11-93998208-2	chr11	93998126	93998326	+	673.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027569, intron 1 of 28)	intron (NM_027569, intron 1 of 28)	2135.0	NM_027569	70834.0	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	1.00494701742611	2.66847867794023	1.53417763910508	1.93542918809739	1.01090253077649	2.43096122362754	1.54665650862877	2.06262858995991	-0.165484083315826	0.887216059659588	0.998431161219273
Merged-chr10-34282101-4	chr10	34281970	34282170	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009433)	promoter-TSS (NM_009433)	-120.0	NM_009433	22110.0	Mm.20445	NM_009433	ENSMUSG00000047514	Tspyl1	Tspyl	testis-specific protein, Y-encoded-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-111972035-2	chr10	111971935	111972135	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178610)	promoter-TSS (NM_178610)	-660.0	NM_178610	52705.0	Mm.34606	NM_178610	ENSMUSG00000063334	Krr1	2610511F02Rik|AI255219|AI428520|D10Ertd773e|Hrb2	KRR1, small subunit (SSU) processome component, homolog (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-4196054-2	chr12	4195954	4196154	+	575.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159537, intron 6 of 21)	RMER10A|LTR|ERVL	37911.0	NM_134046	52504.0	Mm.70546	NM_134046	ENSMUSG00000020652	Cenpo	2810429O05Rik|8430427C03Rik|D12Ertd482e	centromere protein O	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-43475593-2	chr10	43475493	43475693	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-3547.0	NM_199028	331623.0	Mm.490388	NM_199028	ENSMUSG00000038214	Bend3	mKIAA1553	BEN domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-25007046-3	chr5	25006959	25007159	+	779.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145401, intron 3 of 15)	intron (NM_145401, intron 3 of 15)	-11306.0	NM_001310480	108099.0	Mm.33649	NM_145401	ENSMUSG00000028944	Prkag2	2410051C13Rik|AAKG|AAKG2|AI854673|H91620p|WPWS	protein kinase, AMP-activated, gamma 2 non-catalytic subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-53479619-3	chr11	53479643	53479843	+	737.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_183173, exon 1 of 1)	exon (NM_183173, exon 1 of 1)	452.0	NM_183173	237761.0	Mm.145208	NM_183173	ENSMUSG00000044352	Sowaha	A830006N08Rik|Ankrd43	sosondowah ankyrin repeat domain family member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-125684116-2	chr2	125683986	125684186	+	598.0	f0_balb.idr|f1_balb.idr	intron (NM_199022, intron 2 of 11)	intron (NM_199022, intron 2 of 11)	10986.0	NM_025613	58521.0	Mm.425101	NM_025613	ENSMUSG00000091337	Eid1	2610002K20Rik|Cri1|EID-1|ORF12|PNAS-22|PTD014	EP300 interacting inhibitor of differentiation 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69327222-2	chr11	69327122	69327322	+	768.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_010599, intron 1 of 13)	intron (NM_010599, intron 1 of 13)	964.0	NM_010599	16499.0	Mm.232472	NM_010599	ENSMUSG00000018470	Kcnab3	C330022D06Rik|Kcnab4|mKv(beta)4	potassium voltage-gated channel, shaker-related subfamily, beta member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-50200879-1	chr11	50200779	50200979	+	658.0	f0_balb.idr	TTS (NM_026543)	TTS (NM_026543)	9941.0	NM_001290769	18412.0	Mm.40828	NM_011018	ENSMUSG00000015837	Sqstm1	A170|OSF-6|Osi|STAP|STONE14|p62	sequestosome 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-131862157-2	chr3	131862032	131862232	+	872.5	f0_c57.idr|f1_balb.idr	Intergenic	MTD|LTR|ERVL-MaLR	-223160.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	1.95781533171057	1.80924803637794	1.15010866614763	1.69977515028321	1.48058117364113	2.10731727090596	1.76203399610315	2.63413626427571	1.05856598554918	0.312721319363988	0.81424270610441
Merged-chr12-91388550-2	chr12	91388495	91388695	+	769.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	-4186.0	NM_181815	75216.0	Mm.312204	NM_181815	ENSMUSG00000061533	Cep128	4930534B04Rik|5430424K18Rik|AI449708|AI480494|E230024F20	centrosomal protein 128	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-24625195-3	chr16	24625094	24625294	+	995.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 5 of 12)	intron (NM_178665, intron 5 of 12)	95880.0	NR_038091	624582.0	Mm.439775	NR_038091		Morf4l1-ps1	A730098P11Rik	mortality factor 4 like 1, pseudogene 1	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-144971220-4	chr4	144971137	144971337	+	985.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	78100.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-12793513-2	chr8	12793413	12793613	+	662.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_015804, intron 1 of 28)	intron (NM_015804, intron 1 of 28)	36497.0	NM_001293667	50770.0	Mm.257837	NM_015804	ENSMUSG00000031441	Atp11a	4930558F19Rik|AU040868|Atpc1h|Ih	ATPase, class VI, type 11A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139411291-2	chr5	139411191	139411391	+	649.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177000, intron 1 of 1)	intron (NM_177000, intron 1 of 1)	4904.0	NM_177000	319772.0	Mm.440271	NM_177000	ENSMUSG00000044092	C130050O18Rik	-	RIKEN cDNA C130050O18 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-66175969-4	chr7	66175863	66176063	+	970.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	66448.0	NM_001081163	269941.0	Mm.333916	NM_001081163	ENSMUSG00000032640	Chsy1	mKIAA0990	chondroitin sulfate synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-102906300-8	chr13	102906200	102906400	+	971.724976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175171, intron 4 of 28)	intron (NM_175171, intron 4 of 28)	146045.0	NR_130171	76624.0	Mm.426384	NR_130171	ENSMUSG00000091906	1700099I09Rik	-	RIKEN cDNA 1700099I09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-66178496-2	chr14	66178396	66178596	+	935.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 7 of 30)	intron (NM_001162366, intron 7 of 30)	35328.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-22474270-4	chr6	22474171	22474371	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-118190.0	NM_138587	27999.0	Mm.490307	NM_138587	ENSMUSG00000029672	Fam3c	D6Wsu176e|Ilei	family with sequence similarity 3, member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-80082862-1	chr15	80082762	80082962	+	713.0	f1_c57bl6.idr	promoter-TSS (NR_028281)	promoter-TSS (NR_028281)	44.0	NR_028281	100302600.0		NR_028281		Snord43	MBII-47	small nucleolar RNA, C/D box 43	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-143100002-2	chr2	143099902	143100102	+	602.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E-int|LTR|ERVL-MaLR	21609.0	NM_020595	57329.0	Mm.157751	NM_020595	ENSMUSG00000027416	Otor	CDRAP|Fdp|MIA|MIAL	otoraplin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-124855060-2	chr2	124854960	124855160	+	829.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28|LTR|ERVL	201479.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-35562152-4	chr18	35562046	35562246	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010771)	promoter-TSS (NM_010771)	-12.0	NM_010771	17184.0	Mm.215034	NM_010771	ENSMUSG00000037236	Matr3	1110061A14Rik|2810017I02Rik|AI841759|AW555618|D030046F20Rik|mKIAA0723	matrin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-15705596-4	chr17	15705468	15705668	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007690, intron 1 of 35)	intron (NM_007690, intron 1 of 35)	601.0	NM_007690	12648.0	Mm.8137	NM_007690	ENSMUSG00000023852	Chd1	4930525N21Rik|AI851787|AW555109	chromodomain helicase DNA binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6278302-4	chr19	6278196	6278396	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010119, intron 1 of 4)	intron (NM_010119, intron 1 of 4)	1400.0	NM_010119	13660.0	Mm.30169	NM_010119	ENSMUSG00000024772	Ehd1	AA409636|Past1|RME-1	EH-domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-63077323-4	chr14	63077215	63077415	+	717.200012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	22242.0	NR_046019	72609.0	Mm.387101	NR_046019		2700070H01Rik	-	RIKEN cDNA 2700070H01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-88823109-2	chr15	88823009	88823209	+	802.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_029720, exon 6 of 10)	exon (NM_029720, exon 6 of 10)	3463.0	NM_029720	76737.0	Mm.292567	NM_029720	ENSMUSG00000023272	Creld2	5730592L21Rik|C85758	cysteine-rich with EGF-like domains 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139345279-4	chr5	139345176	139345376	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_197980)	promoter-TSS (NM_197980)	-110.0	NM_197980	68033.0	Mm.261064	NM_197980	ENSMUSG00000045438	Cox19	1810074D02Rik|2810437L13Rik	cytochrome c oxidase assembly protein 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-57399036-3	chr17	57398925	57399125	+	702.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355722, intron 2 of 22)	L1Md_F2|LINE|L1	40339.0	NM_010130	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-47201635-2	chr3	47201535	47201735	+	609.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-300853.0	NR_105800	102465199.0		NR_105800	ENSMUSG00000098417	Mir6379	Gm27730|mmu-mir-6379	microRNA 6379	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-88021280-2	chr9	88021180	88021380	+	593.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-290020.0	NM_023814	76365.0	Mm.158789	NM_023814	ENSMUSG00000032419	Tbx18	2810012F10Rik|2810404D13Rik	T-box18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26201031-2	chr17	26200963	26201163	+	964.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008113, intron 1 of 5)	CpG	287.0	NM_008113	14570.0	Mm.1383	NM_008113	ENSMUSG00000073433	Arhgdig	Gdi5|RIP2|Rho-GDI-3|Rho-GDI2	Rho GDP dissociation inhibitor (GDI) gamma	protein-coding	0.161217179612096	0.177807002602195	0.172354318046455	0.572806317870093	0.620335970865083	0.179038524701881	0.614605873065324	0.57853169912934	1.71545119018191	0.39703136123354	1
Merged-chr17-70973733-2	chr17	70973630	70973830	+	765.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_023402)	TTS (NM_023402)	16786.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	-0.190283983883644	-0.433512878573243	-0.437149973405175	-0.439946418236497	-0.18409175617518	-0.432691077824907	-0.436349000259406	0.171796401643619	1.83723587345526	0.478276486866423	1
Merged-chr13-74891265-1	chr13	74891165	74891365	+	617.0	f1_balb.idr	Intergenic	RLTR28|LTR|ERVL	-82505.0	NM_001301153	12380.0	Mm.29163	NM_009817	ENSMUSG00000021585	Cast	-	calpastatin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81925733-1	chr15	81925633	81925833	+	970.3333130000001	f1_balb.idr	intron (NM_030229, intron 1 of 5)	intron (NM_030229, intron 1 of 5)	480.0	NM_030229	78929.0	Mm.215115	NM_030229	ENSMUSG00000022476	Polr3h	5031409G22Rik|RPC8	polymerase (RNA) III (DNA directed) polypeptide H	protein-coding	0.804758681370729	0.368636989830094	0.675947068467518	0.357274206599805	0.719149954106586	0.370085130642173	0.921350369315061	0.65432955594405	0.702166334121194	0.689796221866056	1
Merged-chr2-181363982-2	chr2	181363882	181364082	+	619.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144894)	promoter-TSS (NM_144894)	-949.0	NM_144894	229007.0	Mm.87720	NM_144894	ENSMUSG00000027582	Zgpat	1500006I01Rik|BC021513	zinc finger, CCCH-type with G patch domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128130876-2	chr2	128130776	128130976	+	818.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001284410, exon 4 of 4)	3' UTR (NM_001284410, exon 4 of 4)	3301.0	NM_001284410	12125.0	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-180272004-2	chr2	180271904	180272104	+	779.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_145851, intron 1 of 9)	intron (NM_145851, intron 1 of 9)	1461.0	NM_145851	252966.0	Mm.386884	NM_145851	ENSMUSG00000038990	Cables2	ik3-2	CDK5 and Abl enzyme substrate 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-43819658-1	chr5	43819558	43819758	+	885.0	f1_balb.idr	intron (NM_009763, intron 1 of 8)	intron (NM_009763, intron 1 of 8)	765.0	NM_009763	12182.0	Mm.246332	NM_009763	ENSMUSG00000029082	Bst1	114/A10|A530073F09|BP-3|Bp3|Bsta1|CD157|Ly65	bone marrow stromal cell antigen 1	protein-coding	1.56463687454801	2.29288846365359	2.55547158703898	1.16988895205991	2.36091652443237	1.787189898911	3.44700063279886	1.6659062303657	1.10188109185443	0.269693626529162	0.772959591673376
Merged-chr19-32954448-4	chr19	32954342	32954542	+	955.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	196865.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-122029022-4	chr2	122028985	122029185	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001256055, intron 2 of 7)	CpG-8471	502.0	NM_001256055	100042807.0	Mm.329403	NM_001256055	ENSMUSG00000043424	Eif3j2	Eif3j-2|Gm9781|eIF3 p35|eIF3j-B	eukaryotic translation initiation factor 3, subunit J2	protein-coding	2.43140875290104	2.39020519937625	2.08721739704986	1.40951520960178	1.68737226069692	2.40866267824779	1.82644294223061	1.18229013622125	-0.738995530044998	0.475233097527732	0.927029054433838
Merged-chr19-57356452-3	chr19	57356421	57356621	+	855.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040316, intron 1 of 2)	B3|SINE|B2	4378.0	NR_040316	320879.0	Mm.375089	NR_040316	ENSMUSG00000097785	B230217O12Rik	-	RIKEN cDNA B230217O12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-93818353-4	chr1	93818250	93818450	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_025454, exon 8 of 8)	3' UTR (NM_025454, exon 8 of 8)	-6890.0	NM_178882	98314.0	Mm.383401	NM_178882	ENSMUSG00000073609	D2hgdh	AA408776|AA408778|AI325464	D-2-hydroxyglutarate dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150914560-4	chr4	150914481	150914681	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-4660.0	NM_020569	57320.0	Mm.277349	NM_020569	ENSMUSG00000028964	Park7	DJ-1|Dj1	Parkinson disease (autosomal recessive, early onset) 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55713600-4	chr14	55713480	55713680	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161715)	promoter-TSS (NM_001161715)	-88.0	NM_001161715	21816.0	Mm.41964	NM_019984	ENSMUSG00000022218	Tgm1	2310004J08Rik|Tgase1	transglutaminase 1, K polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-142016802-2	chr7	142016702	142016902	+	768.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357705, intron 1 of 4)	intron (NM_001357705, intron 1 of 4)	24623.0	NR_037291	100526509.0		NR_037291	ENSMUSG00000092652	Mir3104	mir-3104|mmu-mir-3104	microRNA 3104	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114683949-4	chr11	114683860	114684060	+	998.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053273, intron 1 of 13)	ORR1B2|LTR|ERVL-MaLR	8492.0	NM_053273	117160.0	Mm.271934	NM_053273	ENSMUSG00000034714	Ttyh2	1110001A03Rik	tweety family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-103984362-2	chr14	103984262	103984462	+	738.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045953, intron 1 of 2)	RMER10A|LTR|ERVL	42780.0	NR_045953	73877.0	Mm.399172	NR_045953	ENSMUSG00000115727	4930432J09Rik	-	RIKEN cDNA 4930432J09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-6412823-1	chr11	6412723	6412923	+	807.0	f1_c57bl6.idr	Intergenic	Intergenic	-3047.0	NM_008907	268373.0	Mm.5246	NM_008907	ENSMUSG00000071866	Ppia	2700098C05|Cphn|CyP-18|CypA	peptidylprolyl isomerase A	protein-coding	-1.20406370813143	-1.56956373024278	-1.57884638916872	-1.58647144159385	-1.598104728449	-1.56755213932999	-1.57674499865798	-1.58510656085539	-1.70745470802464	0.626337835847419	1
Merged-chr13-60672596-2	chr13	60672486	60672686	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	70375.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	2.28632747718155	2.03429769203265	3.16331137066983	2.05874980430262	2.48396760561204	1.8603583842102	2.3956437293247	1.29276809180721	-0.853143966430506	0.362992492716154	0.858671910017431
Merged-chr6-87465315-1	chr6	87465215	87465415	+	563.0	f1_c57bl6.idr	intron (NM_001037727, intron 9 of 10)	intron (NM_001037727, intron 9 of 10)	31012.0	NR_104483	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-30584425-4	chr12	30584370	30584570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172049)	promoter-TSS (NM_172049)	27.0	NM_172049	211986.0	Mm.34035	NM_172049	ENSMUSG00000043061	Tmem18	BC024093	transmembrane protein 18	protein-coding	6.7880736304619	6.81582299152593	6.3943303620125	6.08321195601243	6.56852604574305	6.58555160858343	6.82436825078819	6.10820048476663	-0.00955673576990693	0.966548442717993	0.998431161219273
Merged-chr17-35752785-4	chr17	35752684	35752884	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19666.0	NR_045459	74601.0	Mm.410840	NR_045459	ENSMUSG00000092171	4833427F10Rik	-	RIKEN cDNA 4833427F10 gene	ncRNA	5.47292182349076	4.73996505311711	4.99638873591382	5.60175353840237	5.12915773651745	5.061625470555	5.7459794352237	4.68065499738163	-0.0551077566038505	0.871004592400103	0.998431161219273
Merged-chr17-31187618-2	chr17	31187518	31187718	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163776, intron 9 of 12)	intron (NM_001163776, intron 9 of 12)	10131.0	NM_080727	140765.0	Mm.214638	NM_080727	ENSMUSG00000024034	Tmprss3	-	transmembrane protease, serine 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-89005203-2	chr11	89005103	89005303	+	802.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_009546, intron 2 of 8)	ID_B1|SINE|B4	5800.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	-0.168386089235358	-0.154799221780863	0.488385054001236	0.129784394471315	-0.027236041908048	-0.153791140537193	-0.158279964748014	0.134186385719832	-1.34102733223725	0.549699539602548	1
Merged-chr16-18958486-2	chr16	18958385	18958585	+	702.458374	f1_balb.idr|f1_c57bl6.idr	intron (NM_010435, intron 24 of 24)	L1Md_T|LINE|L1	81735.0	NM_010435	15260.0	Mm.15694	NM_010435	ENSMUSG00000022702	Hira	AA138857|D16Ertd95e|Gm15797|N28177|Tuple1	histone cell cycle regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85525202-2	chr12	85525102	85525302	+	865.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTRETN_Mm|LTR|ERVK	51312.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-145739159-2	chr2	145739059	145739259	+	967.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_033220, intron 3 of 3)	URR1B|DNA|hAT-Charlie	37964.0	NR_033220	408057.0	Mm.486711	NR_033220	ENSMUSG00000087594	BC039771	-	cDNA sequence BC039771	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-102625353-6	chr15	102625226	102625426	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001310070, exon 1 of 12)	5' UTR (NM_001310070, exon 1 of 12)	138.0	NM_001310070	223922.0	Mm.208714	NM_146065	ENSMUSG00000099083	Atf7	1110012F10Rik|9430065F09Rik|AI549878|C130020M04Rik	activating transcription factor 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-40381920-2	chr9	40381820	40382020	+	742.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357617, intron 2 of 20)	intron (NM_001357617, intron 2 of 20)	-5503.0	NM_001357621	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-43771705-1	chr5	43771605	43771805	+	581.0	f0_balb.idr	intron (NM_178729, intron 2 of 8)	ORR1D2|LTR|ERVL-MaLR	10444.0	NM_001159963	242960.0	Mm.25794	NM_178729	ENSMUSG00000039753	Fbxl5	Fbl4|Fir4	F-box and leucine-rich repeat protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-25616071-2	chr2	25615971	25616171	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029859, intron 4 of 13)	intron (NM_029859, intron 4 of 13)	1607.0	NM_029859	77058.0	Mm.478493	NM_029859	ENSMUSG00000026940	Ccdc183	4921530D09Rik|Cccd183|Kiaa1984	coiled-coil domain containing 183	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-39778677-4	chr6	39778589	39778789	+	987.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32247.0	NM_010270	14548.0	Mm.377071	NM_010270	ENSMUSG00000029918	Mrps33	AI841153|CGI-139|Gdap3|MRP-S33|PTD003	mitochondrial ribosomal protein S33	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-8225281-3	chr8	8225184	8225384	+	576.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	435489.0	NM_010111	13642.0	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-9335879-2	chr11	9335779	9335979	+	833.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178259, intron 27 of 61)	intron (NM_178259, intron 27 of 61)	143937.0	NM_178259	268379.0	Mm.39270	NM_178259	ENSMUSG00000004668	Abca13	9830132L24|A930002G16Rik|AI956815	ATP-binding cassette, sub-family A (ABC1), member 13	protein-coding	-1.5061220274826	-1.47360709383584	-1.48343987814663	-1.49151681994238	-1.50383953926072	-1.47147628845725	-1.0170701920923	-1.49007105122263	2.15652851593596	0.535359572134045	1
Merged-chr13-94322646-4	chr13	94322526	94322726	+	966.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	36297.0	NR_045619	328309.0	Mm.174191	NM_183205	ENSMUSG00000042857	Gm9776	A530089L17	predicted gene 9776	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-9555555-4	chr14	9555462	9555662	+	771.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360141, intron 9 of 9)	intron (NM_001360141, intron 9 of 9)	-328533.0	NR_030680	100042415.0	Mm.235938	NR_030680	ENSMUSG00000089686	Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-11630175-3	chr2	11630081	11630281	+	811.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12611.0	NM_008367	16184.0	Mm.915	NM_008367	ENSMUSG00000026770	Il2ra	CD25|Il2r|Ly-43	interleukin 2 receptor, alpha chain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-87386360-2	chr6	87386260	87386460	+	928.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026860, intron 3 of 5)	URR1A|DNA|hAT-Charlie	2575.0	NM_026860	68888.0	Mm.46387	NM_026860	ENSMUSG00000030048	Gkn3	1190003M12Rik	gastrokine 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30932104-2	chr2	30932004	30932204	+	643.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-20897.0	NM_133673	30934.0	Mm.249164	NM_133673	ENSMUSG00000026848	Tor1b	2610016F05Rik|DQ1|torsinB	torsin family 1, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-10322959-1	chr17	10322859	10323059	+	541.0	f1_balb.idr	Intergenic	Intergenic	-1643.0	NR_045461	76634.0	Mm.491052	NR_045461	ENSMUSG00000099384	1700110C19Rik	-	RIKEN cDNA 1700110C19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-45205950-2	chr19	45205851	45206051	+	593.5	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	29285.0	NM_010691	16814.0	Mm.116815	NM_010691	ENSMUSG00000025216	Lbx1	Lbx1h	ladybird homeobox 1	protein-coding	2.28132722425738	1.26774009562894	2.59940870485676	1.874817097381	1.60732429546725	1.57802427021821	2.62139759601121	3.56731283163342	1.07770533668705	0.274175322242139	0.778241629880918
Merged-chr12-52602514-2	chr12	52602349	52602549	+	932.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045910)	promoter-TSS (NR_045910)	-127.0	NR_045910	73278.0	Mm.396209	NR_045910	ENSMUSG00000100315	1700031P21Rik	-	RIKEN cDNA 1700031P21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-113844968-2	chr5	113844868	113845068	+	593.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011779, intron 10 of 10)	intron (NM_011779, intron 10 of 10)	-14467.0	NM_009151	20345.0	Mm.332590	NM_009151	ENSMUSG00000048163	Selplg	CD162|Psgl-1|Psgl1|Selp1|Selpl	selectin, platelet (p-selectin) ligand	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-15999487-3	chr19	15999393	15999593	+	772.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045355, intron 2 of 2)	L1_Rod|LINE|L1	14418.0	NR_045355	100502653.0	Mm.149980	NR_045355	ENSMUSG00000097557	C130060C02Rik	-	RIKEN cDNA C130060C02 gene	ncRNA	2.06875994281502	1.76090311072613	1.36995759228777	2.0043255241348	1.29995419879341	1.77337488237488	2.08005793225186	1.66752726823498	-0.298495194652411	0.77533913599406	0.998431161219273
Merged-chr1-180764951-2	chr1	180764851	180765051	+	557.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	38908.0	NM_133225	170760.0	Mm.272981	NM_133225	ENSMUSG00000026499	Acbd3	60kDa|8430407O11Rik|D1Ertd10e|GCP60|GOLPH1|Gocap1|Pap7	acyl-Coenzyme A binding domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-8691426-4	chr6	8691341	8691541	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252266, intron 5 of 11)	intron (NM_001252266, intron 5 of 11)	67017.0	NM_001252266	15893.0	Mm.275683	NM_010492	ENSMUSG00000062995	Ica1	69kDa|ICA69	islet cell autoantigen 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27856452-4	chr17	27856330	27856530	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080769)	promoter-TSS (NM_001080769)	-77.0	NM_001080769	224648.0	Mm.291291	NM_001080769	ENSMUSG00000039512	Uhrf1bp1	1110020K19Rik|AA408674|F830021D11Rik|mKIAA4127	UHRF1 (ICBP90) binding protein 1	protein-coding	-1.8429182434137	-1.8129848525291	-1.82203695700074	-1.54461076807193	-1.84081697472045	-1.81102322372834	-1.81998775896484	-1.82814164409203	-1.43114970378833	0.684630132144154	1
Merged-chr1-34112167-1	chr1	34112067	34112267	+	709.0	f0_balb.idr	intron (NM_001276764, intron 5 of 102)	intron (NM_001276764, intron 5 of 102)	-5192.0	NR_105861	102466987.0		NR_105861	ENSMUSG00000105982	Mir6896	mmu-mir-6896	microRNA 6896	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-61592106-2	chr2	61592006	61592206	+	667.833374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164071)	promoter-TSS (NM_001164071)	-991.0	NR_149324	21353.0	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114680463-4	chr11	114680377	114680577	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053273, intron 1 of 13)	intron (NM_053273, intron 1 of 13)	5009.0	NM_053273	117160.0	Mm.271934	NM_053273	ENSMUSG00000034714	Ttyh2	1110001A03Rik	tweety family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124533283-2	chr5	124533183	124533383	+	681.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1892.0	NM_021430	75695.0	Mm.41180	NM_021430	ENSMUSG00000029392	Rilpl1	2900002H16Rik|6330559I19Rik|GOSPEL	Rab interacting lysosomal protein-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-48086131-4	chr6	48086008	48086208	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362062, intron 1 of 5)	CpG	485.0	NM_001347142	69228.0	Mm.207555	NM_001163475	ENSMUSG00000057691	Zfp746	2810407L07Rik|AI317225|Znf746	zinc finger protein 746	protein-coding	2.60002045852989	2.07105913918719	1.85474388122676	2.28053773668701	1.18851053435619	2.08651519673294	1.49630471244002	2.38512916827646	-0.886207726771253	0.380352482382849	0.872111558853884
Merged-chr15-27215920-4	chr15	27215808	27216008	+	995.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-250769.0	NM_020332	11732.0	Mm.265264	NM_020332	ENSMUSG00000022265	Ank	Ankh|D15Ertd221e|ank|mKIAA1581	progressive ankylosis	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-163048129-3	chr2	163048021	163048221	+	629.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6514.0	NM_008652	17865.0	Mm.4594	NM_008652	ENSMUSG00000017861	Mybl2	B-Myb|Bmyb	myeloblastosis oncogene-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-87044588-4	chr17	87044508	87044708	+	992.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19047.0	NM_019936	56724.0	Mm.109329	NM_019936	ENSMUSG00000024146	Cript	1200020A08Rik|AA589469	cysteine-rich PDZ-binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-87275088-4	chr12	87274985	87275185	+	796.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8357.0	NM_146036	217737.0	Mm.22626	NM_146036	ENSMUSG00000021037	Ahsa1	BC023857|p38	AHA1, activator of heat shock protein ATPase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-142462746-4	chr7	142462670	142462870	+	917.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001136071, intron 1 of 10)	intron (NM_001136071, intron 1 of 10)	1958.0	NM_001136071	16985.0	Mm.234003	NM_019391	ENSMUSG00000018819	Lsp1	Lsp-1|WP34|p50|pp52	lymphocyte specific 1	protein-coding	2.23440524750388	1.76359896673166	1.19024383756573	3.22319516357843	2.25499815170611	1.77768633231553	1.19890279096165	3.07870914115226	-0.133334085754778	0.900846086730052	0.998431161219273
Merged-chr14-74976509-3	chr14	74976412	74976612	+	899.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_046078, intron 2 of 2)	intron (NR_046078, intron 2 of 2)	1426.0	NR_046078	100043169.0	Mm.145900	NR_046078	ENSMUSG00000115019	Gm4278	-	predicted gene 4278	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-40539791-2	chr3	40539691	40539891	+	807.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175515)	promoter-TSS (NM_175515)	-976.0	NM_175515	380614.0	Mm.105309	NM_175515	ENSMUSG00000060798	Intu	9230116I04Rik|9430087H23Rik|Pdzd6|Pdzk6|mKIAA1284	inturned planar cell polarity protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5723043-4	chr19	5722946	5723146	+	988.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114595, intron 1 of 17)	intron (NM_001114595, intron 1 of 17)	3271.0	NM_001114595	114601.0	Mm.210447	NM_053252	ENSMUSG00000024937	Ehbp1l1	G430002G23Rik	EH domain binding protein 1-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-110157777-2	chr7	110157677	110157877	+	667.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35718.0	NM_009516	22390.0	Mm.287173	NM_009516	ENSMUSG00000031016	Wee1	Wee1A	WEE 1 homolog 1 (S. pombe)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-20768485-2	chr10	20768397	20768597	+	763.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43419.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	0.793190962434407	1.06394572106147	0.40717262236147	0.400659600631865	0.907300673124652	1.18799125628339	0.409028897838143	0.401799641389025	0.397759836608145	0.825719167274701	1
Merged-chr8-79501425-4	chr8	79501314	79501514	+	924.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-101946.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-85833180-2	chr11	85833080	85833280	+	761.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_077059)	promoter-TSS (NR_077059)	565.0	NM_009324	21385.0	Mm.287052	NM_009324	ENSMUSG00000000093	Tbx2	-	T-box 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44286608-4	chr9	44286510	44286710	+	930.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138955, intron 2 of 14)	MIRc|SINE|MIR	1634.0	NM_138955	192663.0	Mm.101876	NM_138955	ENSMUSG00000032131	Abcg4	6430517O04Rik	ATP binding cassette subfamily G member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-107600113-2	chr7	107600013	107600213	+	688.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008905, intron 1 of 24)	intron (NM_008905, intron 1 of 24)	5062.0	NM_008905	19024.0	Mm.2817	NM_008905	ENSMUSG00000036528	Ppfibp2	Cclp1	PTPRF interacting protein, binding protein 2 (liprin beta 2)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-130915945-2	chr4	130915845	130916045	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010686, intron 1 of 7)	intron (NM_010686, intron 1 of 7)	2611.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-165134015-4	chr1	165133920	165134120	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB7|LINE|L1	26753.0	NM_032005	83993.0	Mm.190649	NM_032005	ENSMUSG00000026572	Tbx19	AU019250|D1Ertd754e|Tpit	T-box 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127208236-3	chr7	127208104	127208304	+	975.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347655)	promoter-TSS (NM_001347655)	264.0	NM_144522	68449.0	Mm.41420	NM_144522	ENSMUSG00000042492	Tbc1d10b	1110003P22Rik|C87963	TBC1 domain family, member 10b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-93007293-4	chr13	93007188	93007388	+	988.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-66016.0	NR_036451	100502942.0	Mm.441946	NM_177623	ENSMUSG00000114382	Gm4814	C920025J10|EG218444	predicted gene 4814	ncRNA	5.04869443917419	5.14032738719327	5.21079817832478	4.6038989388459	3.92226276556538	3.94955315801592	4.18639886231226	2.75190186235141	-1.55655766110985	0.000224039715845963	0.00590343011139062
Merged-chr9-116109842-2	chr9	116109786	116109986	+	718.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_009371, exon 5 of 8)	exon (NM_009371, exon 5 of 8)	65477.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	1.15374984873487	0.732204267049578	0.476692363847479	1.13031249437448	1.86953069846042	0.492574765190547	0.479583303698616	0.468262634833104	0.461428919547123	0.785572899151156	0.998431161219273
Merged-chr3-113630903-4	chr3	113630819	113631019	+	757.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026043)	promoter-TSS (NM_026043)	-770.0	NM_001038696	67225.0	Mm.316928	NM_026043	ENSMUSG00000027981	Rnpc3	2810441O16Rik|AI447568|C030014B17Rik	RNA-binding region (RNP1, RRM) containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-31941742-3	chr5	31941638	31941838	+	791.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144541, intron 7 of 11)	intron (NM_144541, intron 7 of 11)	-194734.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	-0.0823445836121995	-0.0687337669759997	0.232985665691604	0.077029172166298	0.370555601430808	-0.0677215732145515	-0.0722262365245286	0.431545370288348	1.25220757379053	0.568773615077189	1
Merged-chr7-16880874-3	chr7	16880766	16880966	+	815.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081655, intron 1 of 3)	intron (NM_001081655, intron 1 of 3)	5549.0	NM_001081655	629378.0	Mm.491123	NM_001081655	ENSMUSG00000078794	Dact3	EG666671|naa-3	dishevelled-binding antagonist of beta-catenin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-147487605-2	chr4	147487488	147487688	+	757.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039209, intron 1 of 2)	RLTR1B-int|LTR|ERV1	-65689.0	NM_001014397	433804.0	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154	zinc finger protein 985	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-88235779-2	chr1	88235679	88235879	+	643.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001281466, intron 11 of 41)	B3|SINE|B2	8759.0	NM_001281466	100040766.0	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	Heatr7b1	maestro heat-like repeat family member 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-126660431-1	chr3	126660331	126660531	+	613.0	f0_balb.idr	intron (NM_001025438, intron 2 of 18)	intron (NM_001025438, intron 2 of 18)	63480.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	2.50041013372432	1.55257795511676	3.15282939179946	2.99242198076203	2.61767416858527	2.82830286888187	2.19281733452701	3.00755440659185	0.00990913599660983	0.990194417498658	0.998431161219273
Merged-chr19-5851638-2	chr19	5851538	5851738	+	925.666626	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_026169, exon 11 of 11)	3' UTR (NM_026169, exon 11 of 11)	-6158.0	NR_003513	66961.0	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-138257192-4	chr5	138257100	138257300	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081108, intron 2 of 3)	intron (NM_001081108, intron 2 of 3)	1718.0	NM_001081108	66096.0	Mm.206901	NM_001081108	ENSMUSG00000050552	Lamtor4	0910001L09Rik|AV006840	late endosomal/lysosomal adaptor, MAPK and MTOR activator 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-76705627-4	chr5	76705523	76705723	+	998.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	113909.0	NM_199032	381644.0	Mm.332452	NM_199032	ENSMUSG00000036403	Cep135	BC062951|Cep4|Gm1044	centrosomal protein 135	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116431990-2	chr11	116431894	116432094	+	654.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2100.0	NM_176902	319370.0	Mm.258466	NM_176902	ENSMUSG00000050628	Ubald2	1110014K08Rik|D030012E24Rik|Fam100b	UBA-like domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-17209192-4	chr16	17209077	17209277	+	987.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001033338, exon 1 of 1)	exon (NM_001033338, exon 1 of 1)	1042.0	NM_001033338	239731.0	Mm.86671	NM_001033338	ENSMUSG00000071636	Rimbp3	Gm1759|Gm603|RIM-BP3|mKIAA1666	RIMS binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-106474559-5	chr9	106474388	106474588	+	792.313354	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001311150, exon 5 of 11)	exon (NM_001311150, exon 5 of 11)	2461.0	NM_001311150	235587.0	Mm.273659	NM_145619	ENSMUSG00000023249	Parp3	A930002C11Rik|AW990611|Adprt3|Adprtl3|PARP-3|pADPRT-3	poly (ADP-ribose) polymerase family, member 3	protein-coding	2.34746123343763	2.20840294899043	2.41937499538552	2.83214394306893	2.25774591370714	2.51769674792093	2.55576080605885	2.76549798894429	0.126570258619283	0.868751645852696	0.998431161219273
Merged-chr18-5187351-1	chr18	5187251	5187451	+	548.0	f0_balb.idr	Intergenic	Intergenic	-21620.0	NR_153824	102637682.0	Mm.451914	NR_153824		Gm26682	Gm38715	predicted gene, 26682	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-118663149-4	chr14	118663043	118663243	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033336, intron 3 of 30)	intron (NM_001033336, intron 3 of 30)	13788.0	NM_001163675	239273.0	Mm.40537	NM_001033336	ENSMUSG00000032849	Abcc4	ABCC4-N1|D630049P08Rik|MOATB|MRP4	ATP-binding cassette, sub-family C (CFTR/MRP), member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-132595922-4	chr2	132595822	132596022	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2274.0	NR_033468	767814.0	Mm.371752	NR_033468	ENSMUSG00000074783	AU019990	-	expressed sequence AU019990	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85530142-2	chr12	85530042	85530242	+	673.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56252.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-9531848-4	chr11	9531750	9531950	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178259, intron 45 of 61)	intron (NM_178259, intron 45 of 61)	339908.0	NM_178259	268379.0	Mm.39270	NM_178259	ENSMUSG00000004668	Abca13	9830132L24|A930002G16Rik|AI956815	ATP-binding cassette, sub-family A (ABC1), member 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-153553716-4	chr1	153553622	153553822	+	954.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4008.0	NM_028749	74091.0	Mm.24887	NM_028749	ENSMUSG00000042684	Npl	0610033B02Rik	N-acetylneuraminate pyruvate lyase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-47580372-4	chr19	47580311	47580511	+	886.473206	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164639, intron 1 of 17)	CpG	392.0	NM_001164639	20874.0	Mm.281011	NM_009289	ENSMUSG00000025060	Slk	9A2|AV021402|AW411554|Etk4|SMAK|Stk2|mKIAA0204|mSLK	STE20-like kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-23311434-2	chr18	23311334	23311534	+	778.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285813, intron 1 of 21)	intron (NM_001285813, intron 1 of 21)	1414.0	NM_001285813	13527.0	Mm.94371	NM_010087	ENSMUSG00000024302	Dtna	2210407P21Rik|DTN-A|Dtn|Gm19389|a-DB-1|adbn	dystrobrevin alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-60760132-2	chr15	60760021	60760221	+	591.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62844.0	NR_030696	320469.0	Mm.230853	NM_177166		9930014A18Rik	-	RIKEN cDNA 9930014A18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65509547-2	chr9	65509447	65509647	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46846.0	NM_001357813	27965.0	Mm.272475	NM_138584	ENSMUSG00000032388	Spg21	ACP33|BM-019|C78576|D9Wsu18e|GL010|MAST	SPG21, maspardin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-74435764-4	chr1	74435653	74435853	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009509)	TTS (NM_009509)	26369.0	NM_009509	22349.0	Mm.471601	NM_009509	ENSMUSG00000026175	Vil1	Vil	villin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-134669047-4	chr7	134668871	134669071	+	796.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-1716.0	NM_001033420	330662.0	Mm.436572	NM_001033420	ENSMUSG00000058325	Dock1	9130006G06Rik|AI854900|D630004B07Rik|b2b3190Clo	dedicator of cytokinesis 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-113437053-2	chr13	113436953	113437153	+	575.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	65791.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-104570638-4	chr8	104570532	104570732	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20836.0	NM_001024606	382051.0	Mm.290750	NM_001024606	ENSMUSG00000048371	Pdp2	4833426J09Rik|Gm1705|mKIAA1348	pyruvate dehyrogenase phosphatase catalytic subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-66138371-2	chr12	66138271	66138471	+	565.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	146030.0	NM_001162933	238217.0	Mm.188575	NM_001162933	ENSMUSG00000060499	Rpl10l	EG238217	ribosomal protein L10-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-118763632-1	chr2	118763532	118763732	+	1000.0	f1_balb.idr	promoter-TSS (NM_001001982)	promoter-TSS (NM_001001982)	-971.0	NM_001001982	214239.0	Mm.379342	NM_001001982	ENSMUSG00000045838	A430105I19Rik	Ccdc9b|Gm353	RIKEN cDNA A430105I19 gene	protein-coding	0.372071398682721	-0.129134981545706	-0.13318515900328	0.141180171903601	0.106813605343843	-0.128218583948217	-0.132293993771739	0.14539813525827	-0.707580344541435	0.750864847270746	1
Merged-chr4-120027461-3	chr4	120027349	120027549	+	917.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010657, intron 2 of 8)	intron (NM_010657, intron 2 of 8)	-133757.0	NM_007902	13615.0	Mm.284855	NM_007902	ENSMUSG00000028635	Edn2	ET-2|PPET2|VIC	endothelin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165878248-4	chr2	165878115	165878315	+	995.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001291158, exon 1 of 24)	5' UTR (NM_001291158, exon 1 of 24)	222.0	NM_001291158	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-53233306-2	chr18	53233206	53233406	+	592.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MERV1_I-int|LTR|ERV1	-12356.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-20003252-4	chr10	20003131	20003331	+	843.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008580, intron 2 of 29)	intron (NM_008580, intron 2 of 29)	68705.0	NM_008580	26408.0	Mm.6595	NM_008580	ENSMUSG00000071369	Map3k5	7420452D20Rik|ASK|ASK1|MAPKKK5|Mekk5	mitogen-activated protein kinase kinase kinase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-73541196-2	chr7	73541096	73541296	+	996.3333130000001	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_037569, exon 5 of 5)	non-coding (NR_037569, exon 5 of 5)	550.0	NM_001081345	244059.0	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-46472942-4	chr18	46472852	46473052	+	952.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7136.0	NR_045438	72076.0	Mm.82766	NM_028086		Mospd4	2010013H21Rik	motile sperm domain containing 4	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-59966551-2	chr10	59966451	59966651	+	746.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14781.0	NM_029083	74747.0	Mm.21697	NM_029083	ENSMUSG00000020108	Ddit4	5830413E08Rik|AA415483|REDD1|Rtp801|dig2	DNA-damage-inducible transcript 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-117378628-1	chr12	117378528	117378728	+	861.6666869999999	f0_balb.idr	Intergenic	Intergenic	-41616.0	NR_044987	432713.0	Mm.459210	NR_044987	ENSMUSG00000101930	Gm5441	-	predicted gene 5441	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135433869-4	chr4	135433787	135433987	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022980)	promoter-TSS (NM_022980)	-82.0	NM_022980	53902.0	Mm.331970	NM_022980	ENSMUSG00000059713	Rcan3	AU041093|Csp3|Dscr1l2	regulator of calcineurin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83557757-2	chr11	83557657	83557857	+	580.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	20879.0	NM_011338	20308.0	Mm.416125	NM_011338	ENSMUSG00000019122	Ccl9	CCF18|MRP-2|Scya10|Scya9	chemokine (C-C motif) ligand 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76303879-4	chr15	76303780	76303980	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153122, intron 10 of 26)	RLTR20C2_MM|LTR|ERVK	3365.0	NM_153122	75475.0	Mm.322738	NM_153122	ENSMUSG00000022562	Oplah	1700010G02Rik	5-oxoprolinase (ATP-hydrolysing)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-117534511-2	chr12	117534411	117534611	+	940.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175930, intron 3 of 27)	intron (NM_175930, intron 3 of 27)	18032.0	NM_175930	217944.0	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding	1.65767420044264	2.79226967803127	3.31482405709926	1.53177994554189	1.67327909631216	2.81423128674979	3.34073554243395	1.54039198657245	0.0400649704874681	0.966485940255049	0.998431161219273
Merged-chr10-122683244-2	chr10	122683248	122683448	+	952.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110218, intron 1 of 9)	intron (NM_001110218, intron 1 of 9)	4033.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-48138053-1	chr14	48137953	48138153	+	931.6666869999999	f0_balb.idr	intron (NM_033602, intron 1 of 5)	intron (NM_033602, intron 1 of 5)	17184.0	NM_033602	93834.0	Mm.296457	NM_033602	ENSMUSG00000021846	Peli2	AW047589|BB129927	pellino 2	protein-coding	0.737995116464617	0.411470119489787	0.397070110961359	0.385666697873735	0.576052189918231	0.414660090562061	1.90083695047288	1.43191433238828	3.47123681548725	0.0476011751336147	0.316372639286098
Merged-chr6-5022933-2	chr6	5022833	5023033	+	845.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_181595, intron 2 of 15)	ORR1E|LTR|ERVL-MaLR	119613.0	NM_181595	243725.0	Mm.332901	NM_181595	ENSMUSG00000032827	Ppp1r9a	2810430P21Rik|4930518N04Rik|5330407E15|A230094E16Rik|BB181831|NRB|mKIAA1222|neurabin-I	protein phosphatase 1, regulatory (inhibitor) subunit 9A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-182341628-4	chr1	182341514	182341714	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175127)	promoter-TSS (NM_175127)	-8.0	NM_175127	67948.0	Mm.30737	NM_175127	ENSMUSG00000047539	Fbxo28	4833428J17Rik|5730505P19Rik|D1Ertd578e|Fbx28|mKIAA0483	F-box protein 28	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131243099-1	chr1	131242999	131243199	+	720.0	f1_balb.idr	intron (NM_018750, intron 1 of 5)	intron (NM_018750, intron 1 of 5)	2079.0	NM_001313731	54354.0	Mm.248291	NM_018750	ENSMUSG00000026430	Rassf5	1300019G20Rik|Maxp1|Nore1|Nore1A|Nore1B|Rapl	Ras association (RalGDS/AF-6) domain family member 5	protein-coding	1.38108725011363	0.571879056664786	0.773010505814772	0.550026375376804	1.54800597977867	0.574609639151546	0.562352372680866	1.49371411630466	1.07203634874342	0.522701584079678	0.947836760490745
Merged-chr13-52821104-2	chr13	52821004	52821204	+	873.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63899.0	NR_027893	105404.0	Mm.184173	NR_027893		BB123696	-	expressed sequence BB123696	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-62732869-2	chr11	62732769	62732969	+	830.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-3776.0	NM_133208	170740.0	Mm.339982	NM_133208	ENSMUSG00000005267	Zfp287	B230333C16Rik|SKAT-2|Skat2|Znf287|mszf16|mszf74	zinc finger protein 287	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-100786625-4	chr13	100786534	100786734	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172301)	promoter-TSS (NM_172301)	-148.0	NM_172301	268697.0	Mm.260114	NM_172301	ENSMUSG00000041431	Ccnb1	Ccnb1-rs1|Ccnb1-rs13|CycB1|Cycb-4|Cycb-5|Cycb1-rs1	cyclin B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81303515-4	chr10	81303411	81303611	+	997.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293647, intron 1 of 17)	intron (NM_001293647, intron 1 of 17)	10548.0	NM_001146687	18717.0	Mm.24222	NM_008844	ENSMUSG00000034902	Pip5k1c	AI115456|AI835305|Pip5kIgamma	phosphatidylinositol-4-phosphate 5-kinase, type 1 gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-73014900-2	chr15	73014800	73015000	+	941.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029640, intron 6 of 21)	intron (NM_029640, intron 6 of 21)	40912.0	NM_029640	76510.0	Mm.158902	NM_029640	ENSMUSG00000047921	Trappc9	1810044A24Rik|2900005P22Rik|4632408O18Rik|Ibp|Nibp|TRS130|mKIAA1882	trafficking protein particle complex 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-140174728-2	chr4	140174628	140174828	+	841.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_198610, intron 1 of 9)	B4|SINE|B4	31855.0	NR_153821	102636673.0	Mm.449180	NR_153821		Gm13029	Gm33676	predicted gene 13029	ncRNA	1.82097101494045	2.76409812697904	2.42378126371808	2.04587903848823	1.54912183661185	1.90735997241152	1.21599831215305	1.93044756057738	-1.6768362329184	0.0898580648018828	0.463108703390459
Merged-chr4-128729917-4	chr4	128729821	128730021	+	993.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195083, intron 1 of 6)	intron (NM_001195083, intron 1 of 6)	2350.0	NM_001195083	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-142346343-3	chr6	142346223	142346423	+	839.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183165, intron 1 of 11)	intron (NM_183165, intron 1 of 11)	626.0	NM_183165	232491.0	Mm.490474	NM_183165	ENSMUSG00000041671	Pyroxd1	-	pyridine nucleotide-disulphide oxidoreductase domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-142381281-1	chr7	142381181	142381381	+	696.0	f1_balb.idr	intron (NM_009983, intron 4 of 8)	intron (NM_009983, intron 4 of 8)	6589.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	-1.50811478453619	-0.99851579554048	-1.48484165847197	-1.49312904261012	-1.50577282675516	-1.47256636097272	-1.48255773576353	-1.49164560481169	-2.24133836997777	0.518237887813808	1
Merged-chr19-7221141-2	chr19	7221041	7221241	+	752.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13B|LTR|ERVK	-3525.0	NM_007750	12868.0	Mm.14022	NM_007750	ENSMUSG00000035885	Cox8a	COX8L	cytochrome c oxidase subunit VIIIa	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-67072079-4	chr14	67071968	67072168	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360034, intron 1 of 8)	CpG	403.0	NM_001360034	71978.0	Mm.273997	NM_028032	ENSMUSG00000022052	Ppp2r2a	2410004D02Rik|mKIAA1541	protein phosphatase 2, regulatory subunit B, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-9999167-1	chr19	9999067	9999267	+	793.0	f1_c57bl6.idr	intron (NM_011913, intron 1 of 11)	intron (NM_011913, intron 1 of 11)	2466.0	NM_011913	24115.0	Mm.31577	NM_011913	ENSMUSG00000037418	Best1	Bmd|Vmd2|mBest1	bestrophin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-49292120-4	chr13	49292020	49292220	+	979.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015759, intron 3 of 17)	L1M4c|LINE|L1	17088.0	NM_015759	30938.0	Mm.291089	NM_015759	ENSMUSG00000037946	Fgd3	5830461L01Rik|ZFYVE5	FYVE, RhoGEF and PH domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-13555834-4	chr9	13555710	13555910	+	964.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64179.0	NM_001013813	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180812626-4	chr1	180812523	180812723	+	919.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008210, intron 1 of 3)	CpG	982.0	NM_008210	15078.0	Mm.138832	NM_008210	ENSMUSG00000060743	H3f3a	EyeLinc14|H3.3A	H3 histone, family 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28716783-4	chr7	28716655	28716855	+	890.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015796)	promoter-TSS (NM_015796)	-27.0	NM_001310687	50760.0	Mm.358659	NM_015796	ENSMUSG00000030598	Fbxo17	Fbg4|Fbx17|Fbxo26	F-box protein 17	protein-coding	4.1591593935637	3.57707640035621	3.08599184774961	2.68438249629435	4.69171579815851	4.96631235734553	5.03144627622267	4.72645701462505	1.7763242587075	0.000101339470239764	0.00310856358965891
Merged-chr6-40325487-4	chr6	40325256	40325456	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023538)	promoter-TSS (NM_023538)	-122.0	NM_023538	69923.0	Mm.32840	NM_023538	ENSMUSG00000029916	Agk	2610037M15Rik|6720408I04Rik|AI465370|Mulk	acylglycerol kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-137697028-4	chr6	137696936	137697136	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38046.0	NM_011499	20901.0	Mm.22584	NM_011499	ENSMUSG00000030224	Strap	AW557906|C78091|C79202|Unrip	serine/threonine kinase receptor associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-18047870-2	chr16	18047770	18047970	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4990.0	NM_010047	13353.0	Mm.27155	NM_010047	ENSMUSG00000003531	Dgcr6	-	DiGeorge syndrome critical region gene 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-155564787-2	chr4	155564687	155564887	+	953.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355599, intron 1 of 10)	intron (NM_001355599, intron 1 of 10)	972.0	NM_001355599	192185.0	Mm.28347	NM_138671	ENSMUSG00000029063	Nadk	4432404C02Rik|BC004012	NAD kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35059046-4	chr17	35058956	35059156	+	850.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001190449)	promoter-TSS (NM_001190449)	21.0	NM_016765	51793.0	Mm.1457	NM_016765	ENSMUSG00000007039	Ddah2	1110003M04Rik|AU019324|AW413173|DDAH-2|DDAHII|Ddah|G6a|NG30	dimethylarginine dimethylaminohydrolase 2	protein-coding	-0.583449067377857	-1.02282152578373	-1.03400008326803	-1.03822883962362	-0.777224525718346	-1.02039908574442	-1.03146950288059	-1.03789690212328	-0.791518325477985	0.808258493497815	1
Merged-chr7-101608061-4	chr7	101607990	101608190	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26929.0	NM_019915	11872.0	Mm.57008	NM_019915	ENSMUSG00000030651	Art2b	ART2.2|ARTC2|Art|Ly92b|Rt-6|Rt6|Rt6-2	ADP-ribosyltransferase 2b	protein-coding	6.75809840513934	6.29442491985842	6.5486572948675	6.62400102310755	7.14771096374329	7.02509023026714	6.79211096341906	7.06883818366783	0.47155416056365	0.0105095030357335	0.112784452077577
Merged-chr5-124497017-4	chr5	124496919	124497119	+	909.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021430, intron 6 of 6)	intron (NM_021430, intron 6 of 6)	13864.0	NM_029532	76167.0	Mm.156035	NM_029532	ENSMUSG00000029402	Snrnp35	6330548G22Rik	small nuclear ribonucleoprotein 35 (U11/U12)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-44069301-4	chr10	44069200	44069400	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64454.0	NM_172393	11630.0	Mm.292082	NM_172393	ENSMUSG00000019866	Crybg1	AI462491|AI463325|Aim1	crystallin beta-gamma domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70743536-3	chr8	70743412	70743612	+	904.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201607, intron 3 of 16)	CpG	-11167.0	NM_001328047	19339.0	Mm.5083	NM_009001	ENSMUSG00000031840	Rab3a	-	RAB3A, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-106893637-1	chr9	106893537	106893737	+	731.0	f1_c57bl6.idr	3' UTR (NM_153413, exon 53 of 53)	3' UTR (NM_153413, exon 53 of 53)	-1699.0	NM_029103	74840.0	Mm.29778	NM_029103	ENSMUSG00000032575	Manf	3230402M22Rik|AA407711|AA408789|AA673178|Armet|D17914|D18Mgi17	mesencephalic astrocyte-derived neurotrophic factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91965634-4	chr2	91965544	91965744	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2081.0	NM_138306	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-47757820-5	chr6	47757800	47758000	+	968.7666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-4975.0	NR_002841	19799.0		NR_002841		Rn4.5s	-	4.5S RNA	rRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-86202318-2	chr11	86202218	86202418	+	732.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_130959, intron 1 of 6)	RLTR6-int|LTR|ERV1	958.0	NR_130958	74038.0	Mm.171304	NR_130958	ENSMUSG00000085208	Brip1os	4632419I22Rik	BRCA1 interacting protein C-terminal helicase 1, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-85294033-1	chr1	85293933	85294133	+	663.666687	f1_balb.idr	Intergenic	Lx5|LINE|L1	-23467.0	NM_001037909	620078.0	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik	RIKEN cDNA C130026I21 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-102147016-2	chr15	102146916	102147116	+	834.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008344, intron 1 of 3)	intron (NM_008344, intron 1 of 3)	2830.0	NM_008344	16012.0	Mm.358609	NM_008344	ENSMUSG00000023046	Igfbp6	IGFBP-6	insulin-like growth factor binding protein 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101160849-2	chr15	101160785	101160985	+	803.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13187.0	NM_007395	11479.0	Mm.308467	NM_007395	ENSMUSG00000000532	Acvr1b	6820432J04|ALK-4|ActR-IB|ActRIB|Acvrlk4|Alk4|SKR2	activin A receptor, type 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-78388821-1	chr11	78388721	78388921	+	625.5	f0_balb.idr	Intergenic	Intergenic	-2213.0	NM_001277290	15218.0	Mm.4496	NM_008238	ENSMUSG00000002057	Foxn1	D11Bhm185e|Fkh19|HFH-11|Hfh11|Whn|nu|nude	forkhead box N1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-127079655-4	chr2	127079569	127079769	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026678, intron 1 of 7)	MTA_Mm|LTR|ERVL-MaLR	9012.0	NM_026678	109778.0	Mm.22028	NM_026678	ENSMUSG00000001999	Blvra	0610006A11Rik|2500001N03Rik|Blvr	biliverdin reductase A	protein-coding	4.18806236716328	2.15675682998283	3.52149146989985	3.13014334860429	3.69130952866128	4.34951059380382	4.26721087120718	3.74406631236725	0.831885243233507	0.150268593564256	0.602305959756336
Merged-chr1-140183316-4	chr1	140183166	140183366	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009888, exon 1 of 22)	exon (NM_009888, exon 1 of 22)	145.0	NM_009888	12628.0	Mm.8655	NM_009888	ENSMUSG00000026365	Cfh	Mud-1|NOM|Sas-1|Sas1	complement component factor h	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-104236548-2	chr8	104236448	104236648	+	612.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045642, intron 5 of 8)	intron (NR_045642, intron 5 of 8)	12010.0	NR_045642	57813.0	Mm.183110	NM_021028	ENSMUSG00000035824	Tk2	AU024611|mt-TK	thymidine kinase 2, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-96725928-3	chr9	96725819	96726019	+	896.81665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175537, intron 1 of 2)	intron (NM_175537, intron 1 of 2)	5756.0	NM_175537	245007.0	Mm.485954	NM_175537	ENSMUSG00000040433	Zbtb38	A930014K01Rik|CIBZ	zinc finger and BTB domain containing 38	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-136742984-3	chr6	136742894	136743094	+	828.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145067, intron 10 of 25)	intron (NM_145067, intron 10 of 25)	38748.0	NM_145067	14917.0	Mm.222729	NM_145067	ENSMUSG00000042638	Gucy2c	AI893437|GC-C|Gcc	guanylate cyclase 2c	protein-coding	3.30114967785928	3.30451125633268	1.64049431916672	3.26612860616604	3.05201074664909	3.02236098416187	2.92092586720266	3.48880200341202	0.169471331618404	0.8100678834511	0.998431161219273
Merged-chr5-106887679-7	chr5	106887578	106887778	+	880.0714109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177873, intron 20 of 39)	intron (NM_177873, intron 20 of 39)	38212.0	NM_177873	330149.0	Mm.121664	NM_177873	ENSMUSG00000043410	Hfm1	A330009G12Rik|Gm1046|Mer3|Sec63d1	HFM1, ATP-dependent DNA helicase homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95217956-4	chr3	95217866	95218066	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172512)	promoter-TSS (NM_172512)	-24.0	NM_029885	213054.0	Mm.224820	NM_029885	ENSMUSG00000038766	Gabpb2	1810015F01Rik|5830427M07|9430006E19Rik|A430024B14Rik|AV050852|Gabpb2-1	GA repeat binding protein, beta 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-110411707-4	chr9	110411608	110411808	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3498.0	NM_001081043	104831.0	Mm.335477	NM_001081043	ENSMUSG00000036057	Ptpn23	AI462446|PTP-TD14	protein tyrosine phosphatase, non-receptor type 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-35189184-2	chr2	35189084	35189284	+	643.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_026697, intron 4 of 7)	intron (NM_026697, intron 4 of 7)	11936.0	NM_026697	68365.0	Mm.198264	NM_026697	ENSMUSG00000026878	Rab14	0610030G24Rik|2810475J17Rik|A830021G03Rik|AI314285|AI649155|D030017L14Rik	RAB14, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-54783257-2	chr14	54783198	54783398	+	598.0	f0_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1412.0	NM_016972	50934.0	Mm.276831	NM_016972	ENSMUSG00000022180	Slc7a8	AA408822|LAT2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	protein-coding	0.0387568364502713	0.307912334443124	-0.44377396953328	-0.447164166741605	-0.451964021602105	-0.438399944410876	-0.442805768351812	-0.446571529246739	-3.61090755083156	0.170618505886513	1
Merged-chr7-140049325-3	chr7	140049235	140049435	+	806.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010836)	promoter-TSS (NM_010836)	-247.0	NM_001347609	17703.0	Mm.4816	NM_010836	ENSMUSG00000025469	Msx3	AI323377	msh homeobox 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72381035-2	chr6	72380935	72381135	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080742)	promoter-TSS (NM_001080742)	-567.0	NM_016872	53620.0	Mm.440321	NM_016872	ENSMUSG00000073002	Vamp5	AF119384|Camp	vesicle-associated membrane protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-5145968-4	chr2	5145869	5146069	+	954.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028804, intron 2 of 2)	MTD|LTR|ERVL-MaLR	8193.0	NM_028804	74186.0	Mm.274715	NM_028804	ENSMUSG00000026676	Ccdc3	2310045O21Rik	coiled-coil domain containing 3	protein-coding	1.66148361369448	2.06706742791685	2.63989846104226	3.30796416533326	2.24292373887434	1.64977370028567	1.59598727845034	2.97813796699412	-0.656245736750067	0.481058338441434	0.929210758613564
Merged-chr11-18059882-1	chr11	18059782	18059982	+	560.0	f0_c57.idr	Intergenic	RLTR11A|LTR|ERVK	-36104.0	NR_131129	327872.0		NR_131129	ENSMUSG00000085453	Gm12018	-	predicted gene 12018	ncRNA	0.0932326122633843	0.682914026863229	-0.178894531472871	-0.18312190999554	-0.189118705526089	0.208587637696847	-0.177688443465437	-0.182382445304157	-1.99394036295598	0.397682610800992	1
Merged-chr16-95731144-2	chr16	95731044	95731244	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28737.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-46522770-2	chr18	46522670	46522870	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173423, intron 2 of 2)	(GGA)n|Simple_repeat|Simple_repeat	3201.0	NM_173423	240263.0	Mm.38249	NM_173423	ENSMUSG00000033319	Fem1c	2610312A07Rik|3632443A22Rik|AI646567	fem-1 homolog c (C.elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19636495-2	chr7	19636395	19636595	+	712.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_019649, intron 9 of 13)	intron (NM_019649, intron 9 of 13)	-7057.0	NM_009046	19698.0	Mm.1741	NM_009046	ENSMUSG00000002983	Relb	shep	avian reticuloendotheliosis viral (v-rel) oncogene related B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124283762-2	chr6	124283662	124283862	+	556.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F|LINE|L1	-20889.0	NM_001170395	93671.0	Mm.37426	NM_053094	ENSMUSG00000008845	Cd163	CD163v2|CD163v3	CD163 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-6549501-2	chr3	6549442	6549642	+	858.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	70901.0	NM_027048	69347.0	Mm.45822	NM_027048	ENSMUSG00000069118	1700008P02Rik	-	RIKEN cDNA 1700008P02 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-43666425-2	chr19	43666325	43666525	+	690.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356944, intron 1 of 2)	intron (NM_001356944, intron 1 of 2)	8456.0	NM_145156	246696.0	Mm.23827	NM_145156	ENSMUSG00000040414	Slc25a28	Mfrn2|Mrs3/4	solute carrier family 25, member 28	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-46311922-4	chr18	46311814	46312014	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001160399)	promoter-TSS (NM_001160399)	14.0	NM_001160399	240261.0	Mm.329416	NM_001160399	ENSMUSG00000071855	Ccdc112	8430438M01Rik|AW108467	coiled-coil domain containing 112	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-144994088-1	chr6	144993988	144994188	+	571.0	f1_c57bl6.idr	3' UTR (NM_007532, exon 11 of 11)	3' UTR (NM_007532, exon 11 of 11)	54724.0	NM_001024468	12035.0	Mm.4606	NM_007532	ENSMUSG00000030268	Bcat1	BCATc|Eca39	branched chain aminotransferase 1, cytosolic	protein-coding	-0.755998668505046	-0.746265234757744	-0.1835011411898	-0.751921800996326	-0.374998571242037	-0.745544059796034	-0.748756493287208	-0.75149213951642	-0.730804111338351	0.806793324159422	1
Merged-chr11-107417419-4	chr11	107417328	107417528	+	995.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 1 of 9)	intron (NR_153311, intron 1 of 9)	53292.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-58703481-2	chr2	58703381	58703581	+	941.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289660, intron 1 of 7)	intron (NM_001289660, intron 1 of 7)	-51703.0	NM_001289659	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-27923011-2	chr15	27922911	27923111	+	894.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081302, intron 1 of 56)	B2_Mm2|SINE|B2	102837.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-132139723-4	chr1	132139570	132139770	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008795)	promoter-TSS (NM_008795)	15.0	NM_008795	18557.0	Mm.28130	NM_008795	ENSMUSG00000026437	Cdk18	AA682070|Ctk18|Pctk3	cyclin-dependent kinase 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-62872221-2	chr9	62872121	62872321	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_138304, intron 4 of 4)	intron (NM_138304, intron 4 of 4)	-10197.0	NR_003965	677044.0	Mm.422004	NR_003965	ENSMUSG00000074250	Gm10653	-	ribsomal protein S2 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-8527695-2	chr10	8527595	8527795	+	582.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8870.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-31039822-4	chr17	31039716	31039916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17878.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-47643451-3	chr9	47643355	47643555	+	574.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	L1MC4a|LINE|L1	113103.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	-0.683228266881262	-0.674252753935334	-0.510604410837533	-0.679480919957639	-0.32351409195938	-0.673583803422639	-0.676559447075103	-0.273319976663715	2.1780124991889	0.426195031928888	1
Merged-chr13-60724190-4	chr13	60723955	60724155	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 11 of 26)	(CA)n|Simple_repeat|Simple_repeat	62309.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-135166848-4	chr6	135166781	135166981	+	911.275024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013546, intron 1 of 3)	intron (NM_013546, intron 1 of 3)	1334.0	NM_013546	15199.0	Mm.378937	NM_013546	ENSMUSG00000042770	Hebp1	Hebp|p22HBP	heme binding protein 1	protein-coding	3.12560445026098	2.2868774448717	4.46594152321743	3.59684231110304	3.30681607276149	2.69825618193106	2.89433860252933	3.74057783430698	-0.579214312046964	0.385309759898325	0.876154616828737
Merged-chr19-34608549-2	chr19	34608449	34608649	+	663.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001005858, intron 1 of 1)	(TG)n|Simple_repeat|Simple_repeat	592.0	NM_001005858	667370.0	Mm.271850	NM_001005858	ENSMUSG00000062488	Ifit3b	I830012O16Rik	interferon-induced protein with tetratricopeptide repeats 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-136971016-3	chr5	136970929	136971129	+	600.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021719, intron 1 of 4)	intron (NM_021719, intron 1 of 4)	3160.0	NM_021719	60363.0	Mm.87202	NM_021719	ENSMUSG00000001739	Cldn15	2210009B08Rik|BB107105	claudin 15	protein-coding	3.8941118250755	2.36055504367584	3.16393141540299	2.65235656506948	3.84689514070944	3.3005849285989	1.85132721839067	2.21481598584308	-0.169518572131173	0.827956184464118	0.998431161219273
Merged-chr15-83033356-4	chr15	83033252	83033452	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271411)	promoter-TSS (NM_001271411)	45.0	NM_001271412	74039.0	Mm.32584	NM_028728	ENSMUSG00000058099	Nfam1	4921501M20Rik|Cnaip	Nfat activating molecule with ITAM motif 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98359518-3	chr11	98359421	98359621	+	943.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021547, intron 1 of 14)	intron (NM_021547, intron 1 of 14)	1153.0	NM_021547	59045.0	Mm.265546	NM_021547	ENSMUSG00000018167	Stard3	Mln64|es64	START domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-57701989-4	chr14	57701892	57702092	+	813.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015771, intron 3 of 7)	intron (NM_015771, intron 3 of 7)	32426.0	NM_153382	50523.0	Mm.347899	NM_015771	ENSMUSG00000021959	Lats2	4932411G09Rik|AV277261|AW228608	large tumor suppressor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-12211680-4	chr15	12211574	12211774	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356498, intron 1 of 15)	intron (NM_001356498, intron 1 of 15)	6646.0	NM_172958	268783.0	Mm.54460	NM_172958	ENSMUSG00000039458	Mtmr12	3Pap|4932703C11|C730015A02Rik|Pip3ap|mKIAA1682	myotubularin related protein 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76510389-2	chr15	76510277	76510477	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010046, intron 1 of 16)	MT2B|LTR|ERVL	1617.0	NM_010046	13350.0	Mm.22633	NM_010046	ENSMUSG00000022555	Dgat1	ARAT|C75990|D15Ertd23e|Dgat	diacylglycerol O-acyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-76553189-4	chr12	76553081	76553281	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153804, intron 1 of 18)	intron (NM_153804, intron 1 of 18)	-5256.0	NR_046044	100504549.0	Mm.440349	NR_046044	ENSMUSG00000112388	AI463170	-	expressed sequence AI463170	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-47783872-2	chr6	47783772	47783972	+	599.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19780.0	NR_030485	735289.0		NR_030485	ENSMUSG00000076060	Mir704	Mirn704|mir-704|mmu-mir-704	microRNA 704	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-41682933-4	chr10	41682838	41683038	+	941.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358562, intron 5 of 47)	B3A|SINE|B2	33525.0	NM_001358562	75973.0	Mm.228517	NM_029493	ENSMUSG00000075225	Ccdc162	5033413D22Rik|Ccdc162p|Gm29096|Gm61|Gm6976	coiled-coil domain containing 162	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-13201075-4	chr10	13201004	13201204	+	895.775024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6A|LTR|ERVK	-7967.0	NM_181470	353258.0	Mm.117581	NM_181470	ENSMUSG00000019814	Ltv1	2610020N02Rik	LTV1 ribosome biogenesis factor	protein-coding	1.15268601236672	1.49629312877242	0.992526643924489	1.83266607184925	2.4482189917059	1.68974000261436	0.997928570604952	2.38874162642532	1.71741737367973	0.150766708719025	0.602698457755729
Merged-chr19-46487979-2	chr19	46487879	46488079	+	556.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_015752, exon 12 of 12)	3' UTR (NM_015752, exon 12 of 12)	-13669.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-111330663-4	chr5	111330593	111330793	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001301666)	promoter-TSS (NM_001301666)	-4.0	NM_001301644	56305.0	Mm.200516	NM_019640	ENSMUSG00000050017	Pitpnb	PI-TP-beta	phosphatidylinositol transfer protein, beta	protein-coding	0.51904958743145	0.328391446427741	2.64604408321019	0.287024905998367	0.528052446646636	0.333379003602191	1.39296144912526	0.290318368407224	-1.94522157713648	0.454067421090861	0.919120493489568
Merged-chr6-7753357-4	chr6	7753243	7753443	+	985.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60161.0	NM_012055	27053.0	Mm.2942	NM_012055	ENSMUSG00000029752	Asns	-	asparagine synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-122815299-3	chr10	122815215	122815415	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110218, intron 4 of 9)	intron (NM_001110218, intron 4 of 9)	136000.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	2.91977908185175	3.75816681814572	3.62664478423367	3.90283352280035	4.56687196336554	3.47719612718591	4.8654383661579	5.1268217098956	1.39643059107414	0.00459737047021707	0.0628714865900431
Merged-chr17-88118069-4	chr17	88117968	88118168	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7444.0	NM_001190356	225058.0	Mm.312053	NM_001190356		Gm4832	EG225058	predicted gene 4832	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-37155870-1	chr19	37155770	37155970	+	541.0	f1_c57bl6.idr	intron (NM_198300, intron 2 of 10)	Tigger10|DNA|TcMar-Tigger	-17973.0	NR_045329	319931.0	Mm.446730	NR_045329	ENSMUSG00000097591	A330032B11Rik	-	RIKEN cDNA A330032B11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-116338515-3	chr9	116338391	116338591	+	747.805542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	149311.0	NR_152204	100043817.0	Mm.404276	NR_152204		Gm4668	-	predicted gene 4668	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-45808059-3	chr11	45807968	45808168	+	854.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045876)	promoter-TSS (NR_045876)	-15.0	NR_045876	100009664.0	Mm.415439	NR_045876		F630206G17Rik	-	RIKEN cDNA F630206G17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-112927037-4	chr8	112926935	112927135	+	921.81665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-140227.0	NR_033584	791378.0	Mm.350576	NR_033584	ENSMUSG00000110541	Gm10280	-	predicted gene 10280	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-90853375-3	chr5	90853264	90853464	+	915.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37881.0	NM_008176	14825.0	Mm.21013	NM_008176	ENSMUSG00000029380	Cxcl1	Fsp|Gro1|KC|Mgsa|N51|Scyb1|gro	chemokine (C-X-C motif) ligand 1	protein-coding	2.05572815981728	1.38087610490356	2.79278603219677	2.01386853792902	3.00071768782778	2.37132113674457	4.26308535017964	2.20045615226741	1.95036031352932	0.0231101022521974	0.198151399007427
Merged-chr10-17669624-4	chr10	17669501	17669701	+	976.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53627.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-9134977-3	chr19	9134865	9135065	+	808.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_025610, exon 2 of 7)	exon (NM_025610, exon 2 of 7)	601.0	NM_025610	66514.0	Mm.272847	NM_025610	ENSMUSG00000024654	Asrgl1	2410004D18Rik|ALP|ALP1|AU040643|AW060375	asparaginase like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-141038561-4	chr5	141038459	141038659	+	861.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37963.0	NM_175362	108723.0	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-72253780-4	chr4	72253681	72253881	+	906.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	52537.0	NR_027923	68285.0	Mm.37541	NR_027923		C630043F03Rik	AI851307	RIKEN cDNA C630043F03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-31038247-2	chr2	31038147	31038347	+	629.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355105, intron 11 of 15)	(TG)n|Simple_repeat|Simple_repeat	55968.0	NM_028846	74270.0	Mm.346654	NM_028846	ENSMUSG00000026854	Usp20	1700055M05Rik|AI467231|Vdu2	ubiquitin specific peptidase 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101543677-4	chr11	101543565	101543765	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009764, intron 2 of 22)	intron (NM_009764, intron 2 of 22)	8290.0	NM_009764	12189.0	Mm.244975	NM_009764	ENSMUSG00000017146	Brca1	-	breast cancer 1, early onset	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-110430803-4	chr11	110430714	110430914	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356352, intron 1 of 11)	intron (NM_001356352, intron 1 of 11)	31712.0	NM_001356353	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-83536286-4	chr9	83536167	83536367	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12071.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-27122636-2	chr14	27122552	27122752	+	604.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21341.0	NM_001289686	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	0.908384664474799	0.783898232697902	1.13066622566141	1.34877596277857	0.913973016356856	1.1793635063636	1.40569252341802	1.64171973819556	1.08605005354687	0.417061127966113	0.897222495742637
Merged-chr15-58890696-3	chr15	58890600	58890800	+	895.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175151, intron 11 of 11)	intron (NM_175151, intron 11 of 11)	1471.0	NM_175226	75841.0	Mm.4537	NM_175226	ENSMUSG00000037075	Rnf139	4930555P18Rik	ring finger protein 139	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-35639218-3	chr8	35639122	35639322	+	920.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081279, intron 1 of 2)	MLT1A|LTR|ERVL-MaLR	-50202.0	NR_040376	100504714.0	Mm.381744	NR_040376	ENSMUSG00000097357	Gm16793	-	predicted gene, 16793	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-123612142-4	chr4	123612049	123612249	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199137, intron 1 of 92)	intron (NM_001199137, intron 1 of 92)	-4271.0	NR_105824	102465214.0		NR_105824	ENSMUSG00000099005	Mir6398	Gm27657|mmu-mir-6398	microRNA 6398	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-63148263-2	chr14	63148163	63148363	+	828.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360211, intron 7 of 7)	B3|SINE|B2	25801.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81362251-2	chr10	81362151	81362351	+	699.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_028657, exon 6 of 10)	exon (NM_028657, exon 6 of 10)	3569.0	NM_001014836	432479.0	Mm.440450	NM_001014836	ENSMUSG00000020234	4930404N11Rik	2210409H10Rik|5730551K18Rik|AI854616	RIKEN cDNA 4930404N11 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-121652107-4	chr8	121651923	121652123	+	824.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080855)	promoter-TSS (NM_080855)	-90.0	NM_080855	142682.0	Mm.103202	NM_080855	ENSMUSG00000061410	Zcchc14	AA792890|BDG29	zinc finger, CCHC domain containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-108623855-3	chr4	108623780	108623980	+	757.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177045, intron 3 of 24)	intron (NM_177045, intron 3 of 24)	3924.0	NM_177045	319965.0	Mm.151129	NM_177045	ENSMUSG00000028582	Cc2d1b	A830039B04Rik|Freud2	coiled-coil and C2 domain containing 1B	protein-coding	1.3875008988603	0.699074408783094	1.41490726575935	0.668843663942396	2.22787219365126	1.16789723326294	0.925958587338608	0.671200996247358	1.08776057836498	0.457969153760439	0.919570891419578
Merged-chr3-61839696-1	chr3	61839596	61839796	+	587.0	f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	475189.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	1.97672969858388	0.94357855477516	2.49197668026606	0.898628144357575	1.99587739172296	0.949065222490071	0.924217290281509	2.20107898383839	-0.311496657068653	0.892355248682166	0.998431161219273
Merged-chr7-101123741-2	chr7	101123641	101123841	+	807.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_199012, intron 2 of 20)	intron (NM_199012, intron 2 of 20)	14966.0	NM_199012	207278.0	Mm.263041	NM_199012	ENSMUSG00000030691	Fchsd2	BC034086|R74866|Sh3md3|mKIAA0769	FCH and double SH3 domains 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70605802-4	chr8	70605698	70605898	+	927.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133772, intron 1 of 16)	intron (NM_133772, intron 1 of 16)	2516.0	NM_133772	76900.0	Mm.6667	NM_133772	ENSMUSG00000070003	Ssbp4	1210002E11Rik|AW743380|Sspb4	single stranded DNA binding protein 4	protein-coding	0.303547135822024	-0.213178075210289	0.0908772197095098	-0.220442196494219	0.229603236425643	-0.212249826835431	-0.216380929213029	-0.219891443932674	-0.858386954346773	0.724952008706362	1
Merged-chr18-60753703-2	chr18	60753603	60753803	+	610.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-5038.0	NM_008306	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117264734-4	chr8	117264630	117264830	+	869.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	7711.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-4266443-2	chr10	4266343	4266543	+	549.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_031185, exon 1 of 4)	5' UTR (NM_031185, exon 1 of 4)	114.0	NM_031185	83397.0	Mm.27481	NM_031185	ENSMUSG00000038587	Akap12	AI317366|SSeCKS|Srcs5|Tsga12	A kinase (PRKA) anchor protein (gravin) 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-109747792-4	chr3	109747694	109747894	+	833.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	173787.0	NM_146139	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-10039076-1	chr1	10038976	10039176	+	661.0	f1_balb.idr	promoter-TSS (NR_102282)	promoter-TSS (NR_102282)	858.0	NM_026493	211660.0	Mm.244046	NM_026493	ENSMUSG00000056763	Cspp1	2310020J12Rik|4930413O22Rik|AA387550|BC055915|Cspp2|Cspp3	centrosome and spindle pole associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-45491595-4	chr5	45491486	45491686	+	877.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR40|LTR|ERVK	-1788.0	NM_024434	66988.0	Mm.286830	NM_024434	ENSMUSG00000039682	Lap3	2410015L10Rik|AA410100|LAP-3|Lap|Lapep|Pep-7|Pep-S|Pep7|Peps	leucine aminopeptidase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35899577-2	chr17	35899477	35899677	+	694.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001142745)	TTS (NM_001142745)	-2199.0	NM_001033630	69662.0	Mm.260159	NM_001033630	ENSMUSG00000050705	2310061I04Rik	-	RIKEN cDNA 2310061I04 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-7138646-2	chr7	7138546	7138746	+	565.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4A|LINE|L1	-1891.0	NM_029584	76373.0	Mm.159732	NM_029584	ENSMUSG00000063535	Zfp773	2810409K11Rik	zinc finger protein 773	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-77819210-2	chr9	77819110	77819310	+	924.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	64675.0	NM_010295	14629.0	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-57260533-2	chr9	57260433	57260633	+	594.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028820, intron 1 of 2)	intron (NM_028820, intron 1 of 2)	2066.0	NM_028820	74211.0	Mm.428905	NM_028820	ENSMUSG00000032300	1700017B05Rik	AA682102|D9Ertd278e	RIKEN cDNA 1700017B05 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116828692-2	chr11	116828592	116828792	+	572.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026280)	promoter-TSS (NM_026280)	-565.0	NM_001347633	67622.0	Mm.64962	NM_026280	ENSMUSG00000020814	Mxra7	1810057P16Rik|E130302J09Rik	matrix-remodelling associated 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-91766480-4	chr12	91766379	91766579	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 1 of 6)	intron (NM_175367, intron 1 of 6)	19957.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26512598-4	chr17	26512478	26512678	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4106.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-23622558-4	chr13	23622491	23622691	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015787)	promoter-TSS (NM_015787)	-33.0	NM_015787	50709.0	Mm.170587	NM_015787	ENSMUSG00000051627	Hist1h1e	H1-4|H1.4|H1e|H1f4|H1s-4|H1var2	histone cluster 1, H1e	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-17409881-4	chr6	17409790	17409990	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54067.0	NM_008591	17295.0	Mm.86844	NM_008591	ENSMUSG00000009376	Met	AI838057|HGF|HGFR|Par4|c-Met	met proto-oncogene	protein-coding	5.09330615906319	4.85906173046491	4.71064761116621	4.63280177152228	4.68083247268555	4.46778120889851	4.26172389255418	4.99460927537941	-0.25165173885643	0.478626616150681	0.928092227925527
Merged-chr7-30355356-1	chr7	30355256	30355456	+	697.0	f1_balb.idr	TTS (NM_175478)	TTS (NM_175478)	7416.0	NM_175478	233067.0	Mm.23157	NM_175478	ENSMUSG00000036957	Lrfn3	A530045B06Rik|SALM4	leucine rich repeat and fibronectin type III domain containing 3	protein-coding	0.886448472582712	0.500556354250448	0.491094826403971	0.483740583988995	1.09964460633366	1.29089266100362	1.23096243385409	0.485028866564077	2.59076596998353	0.141852426543693	1
Merged-chr15-97520181-4	chr15	97520057	97520257	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	185665.0	NM_028003	71919.0	Mm.12255	NM_028003	ENSMUSG00000022466	Rpap3	2310042P20Rik|D15Ertd682e	RNA polymerase II associated protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-59235371-4	chr10	59235276	59235476	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	13454.0	NM_172939	268301.0	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-29572476-4	chr19	29572363	29572563	+	908.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081319, intron 8 of 25)	Tigger7|DNA|TcMar-Tigger	50181.0	NM_001081319	226089.0	Mm.353838	NM_177641	ENSMUSG00000038658	Ric1	C030046E11Rik|C130057E09Rik|Kiaa1432	RAB6A GEF complex partner 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-109564086-4	chr8	109563990	109564190	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151644, intron 1 of 26)	intron (NR_151644, intron 1 of 26)	1771.0	NR_151644	64340.0	Mm.23705	NM_178380	ENSMUSG00000037993	Dhx38	5730550P09Rik|AI325984|AW540902|Ddx38|KIAA0224|Prp16	DEAH (Asp-Glu-Ala-His) box polypeptide 38	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-75574990-2	chr5	75574890	75575090	+	575.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001122733)	promoter-TSS (NM_001122733)	-1.0	NM_021099	16590.0	Mm.247073	NM_021099	ENSMUSG00000005672	Kit	Bs|CD117|Fdc|Gsfsco1|Gsfsco5|Gsfsow3|SCO1|SCO5|SOW3|Ssm|Tr-kit|W|c-KIT	KIT proto-oncogene receptor tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91871220-2	chr16	91871120	91871320	+	916.166626	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001110275, exon 29 of 29)	3' UTR (NM_001110275, exon 29 of 29)	60410.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-29270296-2	chr6	29270196	29270396	+	726.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-2192.0	NM_001190461	69573.0	Mm.45161	NM_023516	ENSMUSG00000043421	Hilpda	2310016C08Rik|AW049004|Hig2	hypoxia inducible lipid droplet associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-64059229-4	chr15	64059133	64059333	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360037, intron 1 of 11)	intron (NM_001360037, intron 1 of 11)	531.0	NM_001360038	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-59153094-2	chr3	59152994	59153194	+	873.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045641, exon 1 of 1)	non-coding (NR_045641, exon 1 of 1)	398.0	NM_001287119	140795.0	Mm.439021	NM_133200	ENSMUSG00000036381	P2ry14	A330108O13Rik|Gpr105|P2Y14	purinergic receptor P2Y, G-protein coupled, 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124011275-2	chr5	124011175	124011375	+	707.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177876, intron 1 of 3)	intron (NM_177876, intron 1 of 3)	14423.0	NR_105999	102465625.0		NR_105999	ENSMUSG00000098454	Mir7032	Gm27309|mmu-mir-7032	microRNA 7032	ncRNA	-0.0742579306392528	-0.0503830539539535	0.719528335539816	-0.0641131705022997	1.05296800774281	-0.0486596835732204	-0.0563826730342077	-0.063056543991468	0.79659976546658	0.731310989097118	1
Merged-chr11-87639338-4	chr11	87639237	87639437	+	932.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045527, intron 5 of 5)	CpG	22173.0	NM_001045527	327992.0	Mm.390371	NM_001045527	ENSMUSG00000070345	Hsf5	Gm739|MLZ-220	heat shock transcription factor family member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-45795365-7	chr1	45795242	45795442	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_028599, exon 1 of 21)	5' UTR (NM_028599, exon 1 of 21)	176.0	NM_028599	73674.0	Mm.270376	NM_028599	ENSMUSG00000025995	Wdr75	1300003A18Rik|2410118I19Rik|C77608	WD repeat domain 75	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-51422441-1	chr10	51422341	51422541	+	1000.0	f0_balb.idr	Intergenic	RLTR13D3|LTR|ERVK	-58171.0	NM_008147	14727.0	Mm.439661	NM_008147	ENSMUSG00000112023	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-70618717-2	chr18	70618617	70618817	+	998.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010773, intron 5 of 6)	MTC|LTR|ERVL-MaLR	50425.0	NM_010773	17191.0	Mm.322	NM_010773	ENSMUSG00000024513	Mbd2	MBD2a	methyl-CpG binding domain protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-95841531-4	chr11	95841474	95841674	+	878.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001284393)	promoter-TSS (NM_001284393)	-721.0	NM_023121	14710.0	Mm.46299	NM_023121	ENSMUSG00000038811	Gngt2	AV096488	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-160211842-4	chr1	160211759	160211959	+	933.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009786, intron 1 of 5)	intron (NM_009786, intron 1 of 5)	1033.0	NM_009786	12301.0	Mm.10702	NM_009786	ENSMUSG00000014226	Cacybp	SIP	calcyclin binding protein	protein-coding	4.16344319836936	3.55772055973275	3.4342550108776	4.27570105581124	3.95644624734194	3.86320058871913	3.9616689492692	4.55226763749478	0.273295143353801	0.560240345678569	0.960321604678676
Merged-chr1-165661908-4	chr1	165661797	165661997	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038846, intron 2 of 5)	intron (NM_001038846, intron 2 of 5)	-27356.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-109637126-2	chr7	109637026	109637226	+	839.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19979.0	NM_029811	76954.0	Mm.252009	NM_029811	ENSMUSG00000031024	St5	2010004M01Rik|2610305K15Rik	suppression of tumorigenicity 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53089148-2	chr4	53089048	53089248	+	953.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 11 of 49)	intron (NM_013454, intron 11 of 49)	70747.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-84068329-2	chr17	84068229	84068429	+	675.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10331.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-3769598-1	chr13	3769498	3769698	+	742.5	f0_balb.idr	Intergenic	Intergenic	34720.0	NM_027416	70405.0	Mm.20079	NM_027416	ENSMUSG00000063130	Calml3	2310068O22Rik|AI326174	calmodulin-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-105894848-4	chr3	105894716	105894916	+	965.091675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027025, intron 1 of 6)	intron (NM_027025, intron 1 of 6)	-9605.0	NM_009631	11542.0	Mm.235024	NM_009631	ENSMUSG00000000562	Adora3	A3AR|A3R|AA3R|ARA3|Gpcr2	adenosine A3 receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-112924409-2	chr12	112924309	112924509	+	795.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010588, intron 2 of 25)	intron (NM_010588, intron 2 of 25)	-3868.0	NR_105906	102465567.0		NR_105906	ENSMUSG00000098338	Mir6941	Gm27923|mmu-mir-6941	microRNA 6941	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-68057325-2	chr18	68057225	68057425	+	593.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172631, intron 1 of 5)	B1_Mus2|SINE|Alu	124152.0	NM_172631	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-30922791-4	chr16	30922683	30922883	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	158649.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-75218580-6	chr1	75218481	75218681	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001313723, intron 1 of 3)	intron (NM_001313723, intron 1 of 3)	713.0	NM_001313723	22145.0	Mm.1155	NM_009447	ENSMUSG00000026202	Tuba4a	M[a]4|Tuba4	tubulin, alpha 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-121593634-4	chr5	121593539	121593739	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001308450, exon 1 of 11)	5' UTR (NM_001308450, exon 1 of 11)	185.0	NM_009656	11669.0	Mm.284446	NM_009656	ENSMUSG00000029455	Aldh2	AHD-M1|ALDH-E2|ALDHI|Ahd-5|Ahd5	aldehyde dehydrogenase 2, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-123935580-4	chr9	123935473	123935673	+	959.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33119.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-33593858-1	chr8	33593758	33593958	+	830.0	f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-5763.0	NM_017374	19053.0	Mm.29301	NM_017374	ENSMUSG00000009630	Ppp2cb	AI115466|D8Ertd766e|PP2Ac	protein phosphatase 2 (formerly 2A), catalytic subunit, beta isoform	protein-coding	1.84251351794794	1.97436191184177	2.29930402121974	2.22789063658181	0.969683684429479	1.04458030679383	1.78804838285825	1.00048652520944	-2.77828607364069	0.0240777445953588	0.203535542265229
Merged-chr11-110373227-4	chr11	110373129	110373329	+	783.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	HAL1b|LINE|L1	-25873.0	NM_001356345	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-55029012-4	chr1	55028924	55029124	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-1546.0	NM_031179	81898.0	Mm.279736	NM_031179	ENSMUSG00000025982	Sf3b1	155kDa|2810001M05Rik|AA409119|Prp10|SAP155|SF3b155|TA-8|Targ4	splicing factor 3b, subunit 1	protein-coding	6.279235076824	6.26690340109515	6.54891821670849	6.27509027000237	6.25222873861982	6.30346599109471	6.57304215492623	6.34626682580443	0.0277952857717414	0.891444315749875	0.998431161219273
Merged-chr4-139430366-4	chr4	139430292	139430492	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160319, intron 48 of 105)	intron (NM_001160319, intron 48 of 105)	49733.0	NM_001160319	69116.0	Mm.271956	NM_001160319	ENSMUSG00000066036	Ubr4	1810009A16Rik|A930005E13Rik|D930005K06Rik|Gm1032|Gm1666|N28143|RBAF600|Zubr1|mKIAA0462|p600	ubiquitin protein ligase E3 component n-recognin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44267084-4	chr9	44266998	44267198	+	901.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163742, intron 1 of 9)	intron (NM_001163742, intron 1 of 9)	1089.0	NM_001163743	270151.0	Mm.3957	NM_178420	ENSMUSG00000032109	Nlrx1	BC034204|NOD9	NLR family member X1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-79811893-3	chr3	79811742	79811942	+	689.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30820.0	NM_027495	70652.0	Mm.46635	NM_027495	ENSMUSG00000027956	Tmem144	1110057I03Rik|5730537D05Rik	transmembrane protein 144	protein-coding	1.41848319937236	0.877429285080224	1.55238068522244	0.84779143524728	1.63455145541998	0.881110435398736	2.06218991831815	1.51204607148562	1.31284824142759	0.333068022711229	0.833457342148774
Merged-chr3-27604994-2	chr3	27604894	27605094	+	662.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356953, intron 4 of 26)	intron (NM_001356953, intron 4 of 26)	-19999.0	NR_037275	100526525.0		NR_037275	ENSMUSG00000092695	Mir3092	mir-3092|mmu-mir-3092	microRNA 3092	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-86169241-4	chr15	86169146	86169346	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145475, intron 1 of 12)	intron (NM_145475, intron 1 of 12)	-16482.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-73463508-2	chr15	73463408	73463608	+	648.099976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40317.0	NM_001358045	14083.0	Mm.254494	NM_007982	ENSMUSG00000022607	Ptk2	FADK 1|FAK|FRNK|Fadk|p125FAK	PTK2 protein tyrosine kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-67442523-4	chr7	67442428	67442628	+	998.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-69670.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-110803046-2	chr7	110802946	110803146	+	643.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009667, intron 8 of 14)	intron (NM_009667, intron 8 of 14)	30442.0	NM_009667	11717.0	Mm.3238	NM_009667	ENSMUSG00000005686	Ampd3	-	adenosine monophosphate deaminase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-17013139-4	chr11	17013032	17013232	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4414.0	NM_019549	56193.0	Mm.98232	NM_019549	ENSMUSG00000020120	Plek	2010300B13Rik	pleckstrin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91597802-4	chr16	91597705	91597905	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030018)	promoter-TSS (NM_030018)	-125.0	NM_030018	77975.0	Mm.290341	NM_030018	ENSMUSG00000022964	Tmem50b	AU015466|AU019872|B230114J08Rik	transmembrane protein 50B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-5824384-4	chr13	5824283	5824483	+	871.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33709.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-123905108-1	chr1	123905008	123905208	+	609.0	f1_balb.idr	exon (NM_199021, exon 2 of 26)	exon (NM_199021, exon 2 of 26)	140451.0	NM_199021	269109.0	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	1.00098320654306	0.736599185727984	1.22639541320767	0.716236687818453	1.13162064681059	0.955619022675609	1.5711424459676	1.51287816502111	1.74047297986401	0.219349739282742	0.710517864987671
Merged-chr2-52742370-4	chr2	52742283	52742483	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019667)	promoter-TSS (NM_019667)	-234.0	NM_019667	56324.0	Mm.263639	NM_019667	ENSMUSG00000055371	Stam2	1200004O12Rik|5730456G07Rik|BB145015|Hbp	signal transducing adaptor molecule (SH3 domain and ITAM motif) 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-106345049-2	chr10	106344949	106345149	+	934.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	-125261.0	NM_001359673	327814.0	Mm.391424	NM_177373	ENSMUSG00000053825	Ppfia2	5330438O12|B230207K17Rik|E130120L08Rik|mKIAA4112	protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-15812596-4	chr17	15812483	15812683	+	906.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178615, intron 2 of 2)	intron (NM_178615, intron 2 of 2)	14003.0	NM_178615	68799.0	Mm.293466	NM_178615	ENSMUSG00000048027	Rgmb	1110059F19Rik|DRAGON	repulsive guidance molecule family member B	protein-coding	1.73208048499067	1.12437621283125	0.860962108623488	1.06235126870051	1.90804433755102	1.33448280715029	2.09572796796443	0.849261183545132	1.3038451513413	0.322276998980271	0.824334728631032
Merged-chr1-93124537-1	chr1	93124437	93124637	+	541.0	f1_c57bl6.idr	Intergenic	Intergenic	-10703.0	NM_001276710	11611.0	Mm.7457	NM_016702	ENSMUSG00000026272	Agxt	AGT|Agt1|Agxt1|SPT	alanine-glyoxylate aminotransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-103101626-4	chr11	103101525	103101725	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025988)	promoter-TSS (NM_025988)	33.0	NM_152813	72469.0	Mm.264743	NM_152813	ENSMUSG00000020937	Plcd3	2610205J15Rik|mKIAA1964	phospholipase C, delta 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-124574115-8	chr2	124574027	124574227	+	908.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290997, intron 5 of 20)	intron (NM_001290997, intron 5 of 20)	-36169.0	NM_199238	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-21075269-2	chr14	21075169	21075369	+	620.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001243041)	promoter-TSS (NM_001243041)	-883.0	NM_001243041	11534.0	Mm.188734	NM_134079	ENSMUSG00000039197	Adk	2310026J05Rik|5033405D03Rik|AI255373|AI987814|Ak	adenosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-22388095-3	chr9	22387983	22388183	+	780.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028390, intron 1 of 23)	intron (NM_028390, intron 1 of 23)	1123.0	NM_028390	68743.0	Mm.282751	NM_028390	ENSMUSG00000036777	Anln	1110037A17Rik|2900037I21Rik|C78101|Scraps	anillin, actin binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-83950063-2	chr10	83949963	83950163	+	722.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TTTA)n|Simple_repeat|Simple_repeat	150634.0	NR_152790	102637349.0	Mm.402869	NR_152790	ENSMUSG00000111049	Gm34184	-	predicted gene, 34184	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191623243-2	chr1	191623143	191623343	+	566.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001306203, exon 19 of 19)	3' UTR (NM_001306203, exon 19 of 19)	47607.0	NM_001306204	77065.0	Mm.338175	NM_178632	ENSMUSG00000037461	Ints7	5930412E23Rik|int7	integrator complex subunit 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-44601792-2	chr10	44601692	44601892	+	784.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-143044.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-55152235-3	chr3	55152131	55152331	+	633.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177203, intron 4 of 7)	intron (NM_177203, intron 4 of 7)	9990.0	NR_110781	320604.0	Mm.213909	NM_177203	ENSMUSG00000048655	Ccdc169	A730037C10Rik	coiled-coil domain containing 169	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-111615391-2	chr9	111615291	111615491	+	546.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001324546, intron 1 of 9)	intron (NM_001324546, intron 1 of 9)	74957.0	NM_016853	20840.0	Mm.1414	NM_016853	ENSMUSG00000032502	Stac	-	src homology three (SH3) and cysteine rich domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-35844125-4	chr16	35844053	35844253	+	925.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039530, intron 12 of 16)	intron (NM_001039530, intron 12 of 16)	27229.0	NM_001039530	547253.0	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-34047145-4	chr15	34047014	34047214	+	993.80835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35605.0	NM_001357926	67154.0	Mm.130883	NM_026002	ENSMUSG00000022255	Mtdh	2610103J23Rik|3D3|3D3/Lyric|AEG-1|AV353288|D8Bwg1112e|Lyric	metadherin	protein-coding	3.66624424367317	4.8529644407057	3.22337814414453	3.23055758798799	3.75653648159613	4.69354668131244	2.30667888562015	3.43869423783893	-0.173226409969168	0.787039895085739	0.998431161219273
Merged-chr6-72549139-4	chr6	72549069	72549269	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271395)	promoter-TSS (NM_001271395)	-104.0	NM_001042534	12332.0	Mm.18626	NM_007599	ENSMUSG00000056737	Capg	gCap39|mbh1	capping protein (actin filament), gelsolin-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-103374960-3	chr14	103374874	103375074	+	728.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28174.0	NM_207215	105689.0	Mm.6478	NM_207215	ENSMUSG00000033004	Mycbp2	AU023734|AW107953|AW546647|C130061D10Rik|Pam|Phr1|R75243	MYC binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64295947-2	chr5	64295847	64296047	+	629.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 11 of 18)	intron (NM_001289514, intron 11 of 18)	65590.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	-1.06997269762433	-1.30473905204845	-1.3145270772132	-1.32256725251374	-1.06385251204029	-1.30261794616352	-1.3123112828633	-1.32112806497905	0.0394047164033882	0.991001358494878	1
Merged-chr10-121470391-3	chr10	121470288	121470488	+	748.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138956, intron 1 of 4)	RCHARR1|DNA|hAT-Charlie	5862.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	-1.16131321544069	-1.14049302930758	-0.986377310526048	-1.15852653217524	-1.02109673798875	-0.97142503875391	-0.982199768850227	-1.15823194870709	1.3749745732146	0.628062729604772	1
Merged-chr6-86684515-4	chr6	86684420	86684620	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025665)	promoter-TSS (NM_025665)	-29.0	NM_025665	66618.0	Mm.182650	NM_025665	ENSMUSG00000001158	Snrnp27	2610209M04Rik|AI449063|AU022368|Ry1	small nuclear ribonucleoprotein 27 (U4/U6.U5)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-99230496-5	chr11	99230429	99230629	+	970.5904539999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_020618, exon 1 of 11)	5' UTR (NM_020618, exon 1 of 11)	488.0	NM_020618	57376.0	Mm.379086	NM_020618	ENSMUSG00000037935	Smarce1	2810417B20Rik|5830412H02Rik|9030408N19Rik|Baf27	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24742261-6	chr17	24742155	24742355	+	927.4398189999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001346668, exon 4 of 4)	3' UTR (NM_001346668, exon 4 of 4)	5662.0	NM_001346668	27361.0	Mm.28212	NM_013759	ENSMUSG00000075705	Msrb1	D17Wsu82e|SELX|SelR|Sepr|Sepx1	methionine sulfoxide reductase B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-25249109-4	chr12	25249015	25249215	+	966.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	119941.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-132103564-4	chr2	132103474	132103674	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355430, intron 1 of 15)	intron (NM_001355430, intron 1 of 15)	41534.0	NM_001355431	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-95324100-4	chr10	95323997	95324197	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001330175)	promoter-TSS (NM_001330175)	40.0	NM_001330141	12905.0	Mm.473739	NM_009950	ENSMUSG00000045867	Cradd	RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-25745966-4	chr14	25745817	25746017	+	905.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001101433, intron 2 of 3)	intron (NM_001101433, intron 2 of 3)	22939.0	NM_001101433	71918.0	Mm.41904	NM_001101433	ENSMUSG00000055538	Zcchc24	2310047A01Rik	zinc finger, CCHC domain containing 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4611787-2	chr16	4611687	4611887	+	732.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_031184, exon 6 of 7)	exon (NM_031184, exon 6 of 7)	13159.0	NM_025571	66449.0	Mm.354760	NM_025571	ENSMUSG00000014301	Pam16	2010110I09Rik|AV006767|CGI-136|Magmas|Tim16|Timm16	presequence translocase-asssociated motor 16 homolog (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-93564811-3	chr10	93564719	93564919	+	943.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359749, intron 4 of 13)	intron (NM_001359749, intron 4 of 13)	9938.0	NM_001359749	237465.0	Mm.477086	NM_175488	ENSMUSG00000036168	Ccdc38	4933417K05Rik	coiled-coil domain containing 38	protein-coding	4.84884012634993	3.47134668301892	5.07069481961061	4.67804188059237	5.62323235461226	4.02388939562985	4.91882876192027	5.21874431020699	0.517301883923884	0.231354883399002	0.725747702762793
Merged-chr2-156547592-4	chr2	156547438	156547638	+	887.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164818)	promoter-TSS (NM_001164818)	-38.0	NM_026661	68295.0	Mm.253648	NM_026661	ENSMUSG00000027628	Aar2	0610011L14Rik	AAR2 splicing factor homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-65150964-3	chr6	65150871	65151071	+	744.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6241.0	NM_019455	54486.0	Mm.410688	NM_019455	ENSMUSG00000029919	Hpgds	H-PGDS|Ptgds2	hematopoietic prostaglandin D synthase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98774522-2	chr11	98774422	98774622	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145434, intron 1 of 7)	intron (NM_145434, intron 1 of 7)	855.0	NM_145434	217166.0	Mm.390397	NM_145434	ENSMUSG00000020889	Nr1d1	A530070C09Rik|R75201	nuclear receptor subfamily 1, group D, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-42122998-3	chr10	42122903	42123103	+	858.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-104621.0	NM_001034858	213402.0	Mm.211320	NM_001034858	ENSMUSG00000071324	Armc2	2610018I05Rik	armadillo repeat containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24037468-4	chr17	24037356	24037556	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175440)	promoter-TSS (NM_175440)	-787.0	NM_175440	213171.0	Mm.133083	NM_175440	ENSMUSG00000050762	Prss27	CAPH2|Mpn|marapsin	protease, serine 27	protein-coding	4.07859355912332	3.37065907835119	3.14030302188523	3.35494038310128	4.0211033231734	3.27980114947687	4.00556611708863	4.29643959740814	0.588177843839624	0.259112556543433	0.75927260363863
Merged-chr2-157424619-2	chr2	157424519	157424719	+	780.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025395, intron 1 of 13)	CpG	326.0	NM_001025395	20779.0	Mm.22845	NM_009271	ENSMUSG00000027646	Src	AW259666|pp60c-src	Rous sarcoma oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-29463819-4	chr19	29463743	29463943	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021396, intron 5 of 5)	MTC|LTR|ERVL-MaLR	52924.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-13330791-1	chr6	13330691	13330891	+	547.0	f1_balb.idr	Intergenic	L1Md_F|LINE|L1	-82546.0	NR_038149	69413.0	Mm.177847	NR_038149	ENSMUSG00000101894	1700016P04Rik	-	RIKEN cDNA 1700016P04 gene	ncRNA	0.271852066129321	0.303853851775927	0.293560115259609	0.285494979282221	0.855276676407075	0.306150389972977	1.46540462781981	1.04169743120679	4.6237657747132	0.013469634725896	1
Merged-chr16-4679800-4	chr16	4679691	4679891	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030205)	promoter-TSS (NM_030205)	-71.0	NM_030205	78885.0	Mm.325512	NM_030205	ENSMUSG00000039637	Coro7	0610011B16Rik|AW048373|AW556392	coronin 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-8619665-3	chr3	8619650	8619850	+	865.357178	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-8301.0	NR_153352	102635065.0		NR_153352	ENSMUSG00000104102	Gm32496	-	predicted gene, 32496	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-120826400-3	chr9	120826264	120826464	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	88886.0	NR_040742	76402.0	Mm.436588	NR_040742	ENSMUSG00000100146	1700020M21Rik	-	RIKEN cDNA 1700020M21 gene	ncRNA	2.42905563269432	3.16423161150743	2.882995679659	2.77851972408149	5.08280394275275	5.82612076595786	5.6707249253583	4.89134732359502	3.4286104725646	2.95753816201894e-13	1.13248541067776e-10
Merged-chr8-38294491-1	chr8	38294391	38294591	+	904.0	f0_c57.idr	intron (NM_145841, intron 1 of 7)	RLTR45|LTR|ERVK	-42289.0	NR_029884	723860.0		NR_029884	ENSMUSG00000065457	Mir383	Mirn383|mir-383|mmu-mir-383	microRNA 383	ncRNA	1.27481278263201	0.790978608433475	1.27324743525146	0.951387531200328	1.28631914673339	0.793572111670062	1.51665765824137	1.46263724052279	0.878121209314151	0.524514597417913	0.948340152465298
Merged-chr7-56131744-3	chr7	56131640	56131840	+	840.755554	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360080, intron 24 of 92)	intron (NM_001360080, intron 24 of 92)	81351.0	NM_001360080	15204.0	Mm.20929	NM_010418	ENSMUSG00000030451	Herc2	D15F32S1h|D7H15F32S1|D7H15F37S1|jdf2|mKIAA0393|rjs	HECT and RLD domain containing E3 ubiquitin protein ligase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-129373202-2	chr6	129373102	129373302	+	548.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12301.0	NM_027709	71183.0	Mm.79402	NM_027709	ENSMUSG00000030158	Clec12b	4933425B16Rik	C-type lectin domain family 12, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5605130-2	chr17	5605030	5605230	+	707.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	112530.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-25203256-1	chr12	25203156	25203356	+	645.0	f1_c57bl6.idr	Intergenic	Intergenic	74082.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-133552165-4	chr2	133552062	133552262	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007553)	promoter-TSS (NM_007553)	3.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-165677323-2	chr1	165677223	165677423	+	574.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038846, intron 1 of 5)	intron (NM_001038846, intron 1 of 5)	30771.0	NM_001038846	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-93487573-2	chr10	93487473	93487673	+	865.583374	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-1195.0	NM_010401	15109.0	Mm.13000	NM_010401	ENSMUSG00000020017	Hal	Hsd|his|histidase	histidine ammonia lyase	protein-coding	2.48880575918748	1.48089050650088	2.46219440097351	1.66375263549361	3.01920058564976	2.71114996463211	3.19974941670029	3.72452105942928	2.13677288792228	0.00707844822596643	0.0855546223792597
Merged-chr7-101537400-2	chr7	101537300	101537500	+	584.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18402.0	NM_007490	11871.0	Mm.439746	NM_007490	ENSMUSG00000092517	Art2a-ps	ARTC2|Art2a|Ly92a|Rt-6|Rt6|Rt6-1	ADP-ribosyltransferase 2a, pseudogene	protein-coding	1.92015829453481	1.24002028909112	0.979640568461097	1.94804710893789	1.93771473775748	1.2478310557502	0.983855596147016	1.95913603874006	0.0356262236167852	0.977464916111767	0.998431161219273
Merged-chr2-10047269-2	chr2	10047169	10047369	+	590.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027748, intron 1 of 6)	intron (NM_027748, intron 1 of 6)	1340.0	NM_027748	209361.0	Mm.86343	NM_027748	ENSMUSG00000025782	Taf3	140kDa|4933439M23Rik|AW539625|TAF140|TAFII-140|TAFII140|mTAFII140	TATA-box binding protein associated factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150619418-1	chr4	150619318	150619518	+	697.0	f1_balb.idr	intron (NM_001085492, intron 22 of 22)	intron (NM_001085492, intron 22 of 22)	32756.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	-0.339181383283341	-0.330178980066488	0.056882200853878	-0.335444788702559	-0.1074342166039	0.100528197870902	-0.33250977969167	-0.33504812445241	0.751397763495101	0.766897050355819	1
Merged-chr10-127048780-2	chr10	127048680	127048880	+	686.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010009, intron 1 of 8)	intron (NM_010009, intron 1 of 8)	534.0	NM_010009	13115.0	Mm.6216	NM_010009	ENSMUSG00000006724	Cyp27b1	Cp2b|Cyp1|Cyp27b|Cyp40|P450c1|Pddr|Vdd1|Vddr|VddrI|Vdr	cytochrome P450, family 27, subfamily b, polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-87436443-3	chr11	87436320	87436520	+	812.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199293, intron 2 of 30)	intron (NM_001199293, intron 2 of 30)	8829.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-26859183-2	chr10	26859083	26859283	+	933.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_176837, intron 4 of 14)	intron (NM_176837, intron 4 of 14)	86671.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95861563-2	chr3	95861463	95861663	+	600.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-5678.0	NR_151629	70767.0	Mm.279872	NM_027541	ENSMUSG00000015748	Prpf3	3632413F13Rik	pre-mRNA processing factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28308944-4	chr17	28308848	28309048	+	779.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4582.0	NR_028297	72775.0	Mm.201859	NM_028348	ENSMUSG00000007570	Fance	2810451D06Rik|AI415634|AW209126	Fanconi anemia, complementation group E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-158745225-2	chr2	158745125	158745325	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153089, intron 3 of 10)	intron (NM_153089, intron 3 of 10)	-22874.0	NM_027975	71878.0	Mm.85162	NM_027975	ENSMUSG00000027654	Fam83d	2310007D09Rik|BB104611	family with sequence similarity 83, member D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44874111-1	chr7	44874011	44874211	+	558.0	f1_c57bl6.idr	Intergenic	Intergenic	-4323.0	NM_133949	84113.0	Mm.42855	NM_133949	ENSMUSG00000038502	Ptov1	1110030G05Rik|AU041779|Gcap3	prostate tumor over expressed gene 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-28593035-4	chr2	28592944	28593144	+	907.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9765.0	NM_001290484	70239.0	Mm.274120	NM_148928	ENSMUSG00000026816	Gtf3c5	2700084A09Rik|TFIIIC63|TFiiiC2-63	general transcription factor IIIC, polypeptide 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180196047-4	chr1	180195916	180196116	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359268)	promoter-TSS (NM_001359268)	4.0	NM_023341	67426.0	Mm.38330	NM_023341	ENSMUSG00000026489	Coq8a	4632432J16Rik|AI462003|Adck3|Cabc1|mKIAA0451	coenzyme Q8A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141636832-2	chr4	141636732	141636932	+	811.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347237, intron 6 of 18)	RSINE1|SINE|B4	-12998.0	NM_001013780	384071.0	Mm.295682	NM_001013780	ENSMUSG00000040740	Slc25a34	Gm1369	solute carrier family 25, member 34	protein-coding	0.610249535244114	0.425178477076837	0.072944228703093	0.685125846490858	0.205836891664657	0.0796302836629169	0.0741470611514909	0.0694729574877689	-3.18225183851647	0.125219896355875	1
Merged-chr13-9642108-1	chr13	9642008	9642208	+	846.0	f0_balb.idr	intron (NM_001081426, intron 31 of 36)	intron (NM_001081426, intron 31 of 36)	121702.0	NM_001347471	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10389460-2	chr19	10389360	10389560	+	864.5	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_173068, exon 1 of 11)	5' UTR (NM_173068, exon 1 of 11)	370.0	NM_173068	54525.0	Mm.182654	NM_018801	ENSMUSG00000024743	Syt7	AI851541|B230112P13Rik	synaptotagmin VII	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-110847632-2	chr12	110847532	110847732	+	816.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2647.0	NM_001199785	72805.0	Mm.443524	NM_028365	ENSMUSG00000021271	Zfp839	2810455K09Rik	zinc finger protein 839	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-28816105-2	chr3	28816005	28816205	+	608.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A2|LTR|ERVL-MaLR	10597.0	NM_026517	68028.0	Mm.21724	NM_026517	ENSMUSG00000039221	Rpl22l1	3110001N18Rik|AU041196	ribosomal protein L22 like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-98838320-2	chr7	98838220	98838420	+	603.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285795)	promoter-TSS (NM_001285795)	-525.0	NM_009519	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126487855-2	chr7	126487755	126487955	+	799.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_172745, intron 2 of 9)	intron (NM_172745, intron 2 of 9)	500.0	NM_001163713	233870.0	Mm.197829	NM_172745	ENSMUSG00000073838	Tufm	2300002G02Rik|C76308|C76389|EF-TuMT|EFTU	Tu translation elongation factor, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-47250037-3	chr14	47249937	47250137	+	703.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360532, intron 17 of 24)	intron (NM_001360532, intron 17 of 24)	26820.0	NM_001360532	218973.0	Mm.265615	NM_172598	ENSMUSG00000037572	Wdhd1	A630092E18|AND-1|D630024B06Rik	WD repeat and HMG-box DNA binding protein 1	protein-coding	-1.33664238024077	-1.30732081564108	-1.31725863230831	-1.3254218508089	-0.952244101754967	-1.3051672493127	-1.31500892844558	-1.16759341372862	2.25470230303775	0.506155757978017	1
Merged-chr5-25081744-4	chr5	25081652	25081852	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145401, intron 1 of 15)	intron (NM_145401, intron 1 of 15)	18890.0	NM_145401	108099.0	Mm.33649	NM_145401	ENSMUSG00000028944	Prkag2	2410051C13Rik|AAKG|AAKG2|AI854673|H91620p|WPWS	protein kinase, AMP-activated, gamma 2 non-catalytic subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-24902589-4	chr16	24902492	24902692	+	892.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 10 of 12)	intron (NM_178665, intron 10 of 12)	-157047.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-118346683-2	chr7	118346581	118346781	+	712.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28|LTR|ERVL	96879.0	NM_001362180	110058.0	Mm.156558	NM_138649	ENSMUSG00000058420	Syt17	Bk|sytXVII	synaptotagmin XVII	protein-coding	1.6430261761191	1.86153562396925	2.82295842883738	1.0995259679937	2.04158823471246	1.87642365255057	2.84622427423585	1.10413299203842	0.212107547381505	0.848696552648404	0.998431161219273
Merged-chr8-70644237-3	chr8	70644163	70644363	+	731.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-11807.0	NM_001330687	23886.0	Mm.31325	NM_011819	ENSMUSG00000038508	Gdf15	MIC-1|NAG-1|SBF	growth differentiation factor 15	protein-coding	3.10428498496675	2.54684182102815	3.28124058070778	2.76185370830166	2.8299642098934	2.71115738266244	2.48153917342641	3.20903825398879	-0.222370997636493	0.741873707746164	0.998431161219273
Merged-chr5-129864614-3	chr5	129864513	129864713	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_026445)	TTS (NM_026445)	14475.0	NR_145486	18682.0	Mm.3159	NM_011079	ENSMUSG00000025537	Phkg1	Phkg	phosphorylase kinase gamma 1	protein-coding	2.03818174776666	2.12643738581518	2.34715431722017	2.28042261329232	2.98449557164763	3.1335361265628	1.67496925817115	2.2922850253882	0.973444251824067	0.24855365910341	0.74758343357745
Merged-chr8-70643256-2	chr8	70643156	70643356	+	578.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10800.0	NM_001330687	23886.0	Mm.31325	NM_011819	ENSMUSG00000038508	Gdf15	MIC-1|NAG-1|SBF	growth differentiation factor 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70074865-4	chr11	70074749	70074949	+	918.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17795.0	NM_007493	11890.0	Mm.1357	NM_007493	ENSMUSG00000040963	Asgr2	ASGPR2|Asgr|Asgr-2|HL-2	asialoglycoprotein receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-27029970-4	chr14	27030024	27030224	+	773.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8877.0	NM_134437	171463.0	Mm.206726	NM_027265	ENSMUSG00000040717	Il17rd	2810004A10Rik|AI428510|Sef|Sef-S	interleukin 17 receptor D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4191533-2	chr19	4191433	4191633	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031868)	promoter-TSS (NM_031868)	-486.0	NM_178650	108995.0	Mm.288312	NM_178650	ENSMUSG00000040247	Tbc1d10c	1810062O14Rik|AI428527	TBC1 domain family, member 10c	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-104234965-4	chr12	104234884	104235084	+	787.770813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009251, intron 3 of 6)	intron (NM_009251, intron 3 of 6)	-1163.0	NM_001353612	20715.0	Mm.312628	NM_009251		Serpina3g	2A2|AI119734|Spi2-1|Spi2/eb.1|Spi2A|spi2	serine (or cysteine) peptidase inhibitor, clade A, member 3G	protein-coding	2.94506562266693	2.4999874237392	4.06787798711589	3.28698406509309	2.76832485366886	2.85402845725477	3.56634185068173	3.88442405272595	0.0327753290613579	0.959800938560017	0.998431161219273
Merged-chr17-51220756-4	chr17	51220670	51220870	+	981.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41418.0	NM_001285991	72238.0	Mm.120650	NM_028162	ENSMUSG00000023923	Tbc1d5	1600014N05Rik	TBC1 domain family, member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-69248796-2	chr10	69248696	69248896	+	749.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001252636, exon 3 of 11)	exon (NM_001252636, exon 3 of 11)	35602.0	NM_001252638	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-141013043-2	chr5	141012943	141013143	+	717.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12447.0	NM_175362	108723.0	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-46265093-2	chr11	46264993	46265193	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252459, intron 13 of 30)	MTC|LTR|ERVL-MaLR	29536.0	NM_177075	320116.0	Mm.39600	NM_177075	ENSMUSG00000048721	Fndc9	C030019I05Rik	fibronectin type III domain containing 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55783314-9	chr14	55783152	55783352	+	884.815735	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080435, intron 2 of 25)	intron (NM_080435, intron 2 of 25)	820.0	NM_080435	104110.0	Mm.287010	NM_080435	ENSMUSG00000022220	Adcy4	mKIAA4004	adenylate cyclase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81382390-2	chr10	81382290	81382490	+	869.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-2038.0	NM_133964	102115.0	Mm.294975	NM_133964	ENSMUSG00000078440	Dohh	1110033C18Rik|AI585913|AL022869|Hlrc1	deoxyhypusine hydroxylase/monooxygenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78962614-1	chr15	78962514	78962714	+	547.0	f1_c57bl6.idr	intron (NM_001039156, intron 7 of 24)	intron (NM_001039156, intron 7 of 24)	14890.0	NM_001039155	110253.0	Mm.123714	NM_138579	ENSMUSG00000033088	Triobp	AI428493|EST478828|Tara|mKIAA1662	TRIO and F-actin binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-86464436-2	chr11	86464336	86464536	+	752.599976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20221.0	NM_029788	76892.0	Mm.262707	NM_029788	ENSMUSG00000020521	Rnft1	0610013E23Rik|AV007605	ring finger protein, transmembrane 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31385092-4	chr14	31384967	31385167	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347585, intron 3 of 7)	intron (NM_001347585, intron 3 of 7)	32610.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-69221613-2	chr17	69221513	69221713	+	638.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355736, intron 3 of 21)	intron (NM_001355736, intron 3 of 21)	55593.0	NR_045428	69750.0	Mm.439063	NR_045428	ENSMUSG00000100572	2410021H03Rik	-	RIKEN cDNA 2410021H03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-24075875-2	chr11	24075775	24075975	+	617.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2181.0	NM_016707	14025.0	Mm.53687	NM_016707	ENSMUSG00000000861	Bcl11a	2810047E18Rik|BCL-11A|Ctip1|D930021L15Rik|Evi9|Evi9a|Evi9b|Evi9c|mKIAA1809	B cell CLL/lymphoma 11A (zinc finger protein)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-83646542-4	chr10	83646436	83646636	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145220, intron 1 of 20)	Lx8|LINE|L1	2128.0	NM_145220	216190.0	Mm.282985	NM_145220	ENSMUSG00000020263	Appl2	Dip3b	adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-144720629-3	chr2	144720520	144720720	+	988.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025314, intron 4 of 5)	intron (NM_025314, intron 4 of 5)	-103046.0	NM_025490	66328.0	Mm.45377	NM_025490	ENSMUSG00000027431	Scp2d1	1700010M22Rik	SCP2 sterol-binding domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139727626-2	chr5	139727526	139727726	+	630.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_174850, intron 1 of 16)	intron (NM_174850, intron 1 of 16)	8707.0	NM_174850	231830.0	Mm.240510	NM_174850	ENSMUSG00000036718	Micall2	A930021H16Rik|JRAB|MICAL-L2|mFLJ00139	MICAL-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101070566-4	chr7	101070460	101070660	+	962.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38215.0	NM_001146010	207278.0	Mm.263041	NM_199012	ENSMUSG00000030691	Fchsd2	BC034086|R74866|Sh3md3|mKIAA0769	FCH and double SH3 domains 2	protein-coding	1.564534449267	2.20119555113316	2.52473151406251	1.64014466796766	1.57608163773001	2.21781660276993	2.54490032661107	1.64784407327982	0.0391152578345573	0.967956797303346	0.998431161219273
Merged-chr17-87459452-4	chr17	87459346	87459546	+	994.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12511.0	NM_007589	12314.0	Mm.329243	NM_007589	ENSMUSG00000036438	Calm2	1500001E21Rik|AL024017|Cam2|CamC	calmodulin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-85809460-4	chr1	85809352	85809552	+	811.658325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355046, intron 2 of 9)	intron (NM_001355046, intron 2 of 9)	15435.0	NM_001355047	12283.0	Mm.26135	NM_133781	ENSMUSG00000036707	Cab39	AA408805|AA960512|C78372|MO25|MO25alpha	calcium binding protein 39	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-162930012-3	chr2	162929873	162930073	+	958.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1535.0	NM_026499	67996.0	Mm.24042	NM_026499	ENSMUSG00000016921	Srsf6	1210001E11Rik|AI314910|AW146126|Sfrs6	serine/arginine-rich splicing factor 6	protein-coding	2.71723710141662	2.94467663428343	2.09197035985843	2.03082822483108	3.49328950918018	2.96663126921569	3.40065216379967	3.36742082079198	1.48502416558456	0.0289587663969175	0.231220460889674
Merged-chr2-124605528-4	chr2	124605423	124605623	+	726.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290997, intron 5 of 20)	intron (NM_001290997, intron 5 of 20)	-4773.0	NM_199238	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-157070544-1	chr3	157070444	157070644	+	545.0	f1_c57bl6.idr	intron (NM_001039094, intron 4 of 6)	Lx2A1|LINE|L1	463546.0	NR_152231	381498.0	Mm.402095	NR_152231	ENSMUSG00000105834	4930592C13Rik	Gm1657|Gm43159	RIKEN cDNA 4930592C13 gene	ncRNA	-0.364697229414992	-0.342136506865851	-0.349388195170692	0.0314368420735792	-0.363250660875389	0.943203747656992	-0.347777536282362	-0.354074837123513	2.44583907542386	0.318938248920754	1
Merged-chr2-151009311-4	chr2	151009210	151009410	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207204)	promoter-TSS (NM_207204)	88.0	NM_207204	78177.0	Mm.120911	NM_207204	ENSMUSG00000068115	Ninl	4930519N13Rik|Gm1004|Gm1634|mKIAA0980	ninein-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-53934449-1	chr18	53934349	53934549	+	782.5	f0_balb.idr	intron (NM_152809, intron 10 of 12)	intron (NM_152809, intron 10 of 12)	72336.0	NM_152809	70425.0	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	0.810051285679542	0.644559187422825	2.36549703616667	0.600686053617851	0.819064975283648	0.649879725524086	2.45449271511668	1.09342734842759	0.31021248485751	0.830328673873029	0.998431161219273
Merged-chr8-10893107-2	chr8	10893007	10893207	+	723.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6815.0	NR_102285	71624.0	Mm.139075	NR_102285	ENSMUSG00000109089	4833411C07Rik	-	RIKEN cDNA 4833411C07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-107489831-4	chr1	107489742	107489942	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-21581.0	NM_001174170	18788.0	Mm.271870	NM_011111	ENSMUSG00000062345	Serpinb2	PAI-2|Planh2|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-20846339-4	chr14	20846219	20846419	+	880.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9657.0	NM_008873	18792.0	Mm.4183	NM_008873	ENSMUSG00000021822	Plau	u-PA|uPA	plasminogen activator, urokinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106489098-2	chr11	106488998	106489198	+	822.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1302.0	NM_023913	78943.0	Mm.340943	NM_023913	ENSMUSG00000020715	Ern1	9030414B18Rik|AI225830|C85377|Ire1a|Ire1alpha|Ire1p	endoplasmic reticulum (ER) to nucleus signalling 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-105572950-4	chr10	105572854	105573054	+	770.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177368, intron 1 of 11)	intron (NM_177368, intron 1 of 11)	1525.0	NM_177368	278279.0	Mm.25225	NM_177368	ENSMUSG00000036019	Tmtc2	8430438D04Rik|D330034A10Rik	transmembrane and tetratricopeptide repeat containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76750866-1	chr15	76750766	76750966	+	874.0	f1_c57bl6.idr	intron (NM_198420, intron 3 of 10)	intron (NM_198420, intron 3 of 10)	-27021.0	NM_176828	223665.0	Mm.291713	NM_145472	ENSMUSG00000116138	C030006K11Rik	1110033I13Rik	RIKEN cDNA C030006K11 gene	protein-coding	-0.561510084829117	0.0715265931161323	-0.55369692359288	-0.556634846399156	-0.0736449462341145	-0.549028893481784	-0.552856899374535	-0.55612166115538	-0.483665136239471	0.863802347692736	1
Merged-chr6-116265790-4	chr6	116265687	116265887	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290339)	promoter-TSS (NM_001290339)	-745.0	NM_001290339	67492.0	Mm.272772	NM_001081317	ENSMUSG00000042213	Zfand4	Anubl1	zinc finger, AN1-type domain 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-116137009-4	chr9	116136912	116137112	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029575, intron 1 of 6)	intron (NM_029575, intron 1 of 6)	38351.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-82781335-6	chr11	82781225	82781425	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_126067)	promoter-TSS (NR_126067)	216.0	NM_010716	16882.0	Mm.277136	NM_010716	ENSMUSG00000020697	Lig3	D11Wsu78e	ligase III, DNA, ATP-dependent	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-172444436-2	chr2	172444336	172444536	+	969.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025542, intron 1 of 8)	ORR1E|LTR|ERVL-MaLR	3858.0	NM_025542	66404.0	Mm.25157	NM_025542	ENSMUSG00000027502	Rtf2	1700067C04Rik|2410001C21Rik|5730427M17Rik|AA589417|Rtfdc1	replication termination factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-60975425-2	chr1	60975319	60975519	+	681.06665	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2495.0	NM_017480	54167.0	Mm.42044	NM_017480	ENSMUSG00000026009	Icos	AILIM|CCLP|CRP-1|H4|Ly115	inducible T cell co-stimulator	protein-coding	0.775326632363453	0.823673421975962	1.81077988410013	0.796037435612125	1.57400541303836	1.69098283035035	1.50561970485938	1.17739261800348	1.24797025429402	0.376838254663461	0.8699311886157
Merged-chr3-13582431-2	chr3	13582331	13582531	+	970.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357034, intron 1 of 7)	L1_Mus2|LINE|L1	70434.0	NR_040598	75203.0	Mm.490940	NR_040598		4930539N22Rik	-	RIKEN cDNA 4930539N22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-35124466-2	chr7	35124366	35124566	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5173.0	NM_007678	12606.0	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-117938848-2	chr14	117938748	117938948	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001079844, intron 7 of 9)	intron (NM_001079844, intron 7 of 9)	14999.0	NR_105747	102465148.0		NR_105747	ENSMUSG00000098648	Mir6239	Gm28025|mmu-mir-6239	microRNA 6239	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-99062730-4	chr9	99062634	99062834	+	865.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029094, intron 14 of 23)	intron (NM_029094, intron 14 of 23)	-27044.0	NM_001080776	382097.0	Mm.293727	NM_001080776	ENSMUSG00000044860	Gm1123	AV052824|CLSP	predicted gene 1123	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-94513002-4	chr9	94512887	94513087	+	960.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	25094.0	NM_001033145	68861.0	Mm.258746	NM_001033145	ENSMUSG00000045414	1190002N15Rik	GoPro49|HASF	RIKEN cDNA 1190002N15 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-105824405-4	chr3	105824279	105824479	+	818.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8812.0	NR_045845	433637.0	Mm.331285	NR_045845	ENSMUSG00000104835	Gm5547	EG433637	predicted gene 5547	ncRNA	2.07380084232799	1.97418654946057	3.23350856537637	2.45622461238676	2.55066507723125	1.46007854200227	2.55145074574577	3.44398494732473	0.291572975264892	0.740864964140084	0.998431161219273
Merged-chr5-103819853-4	chr5	103819756	103819956	+	887.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133919, intron 7 of 19)	intron (NM_133919, intron 7 of 19)	65283.0	NM_001080798	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-76853626-2	chr12	76853526	76853726	+	744.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145927, intron 1 of 11)	MLTR14|LTR|ERV1	16159.0	NM_145927	110606.0	Mm.151174	NM_145927	ENSMUSG00000033373	Fntb	2010013E13Rik|AA409500	farnesyltransferase, CAAX box, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-17165164-3	chr19	17165040	17165240	+	708.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181348, intron 9 of 19)	intron (NM_181348, intron 9 of 19)	174365.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-74289957-2	chr3	74289865	74290065	+	714.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-272688.0	NR_040450	100504692.0	Mm.394454	NR_040450	ENSMUSG00000104096	Gm20356	-	predicted gene, 20356	ncRNA	-1.05877568042897	-1.03501312238488	-1.04817210678232	-1.05426068996071	-1.05810152525527	-1.03216151557194	-0.188696606725984	-1.05378786495764	3.16074139804981	0.330468818528456	1
Merged-chr7-44899284-1	chr7	44899184	44899384	+	542.0	f1_c57bl6.idr	intron (NM_027376, intron 9 of 10)	intron (NM_027376, intron 9 of 10)	3205.0	NM_027376	70300.0	Mm.276298	NM_027376	ENSMUSG00000011658	Fuz	2600013E07Rik|b2b1273Clo	fuzzy planar cell polarity protein	protein-coding	-0.366626417179347	-0.352692175281507	-0.357249875608969	0.28625245588711	-0.365754612910758	-0.35166575818681	-0.356244039914784	0.294119739107777	0.0282770312316891	0.991511101680898	1
Merged-chr10-75710407-4	chr10	75710311	75710511	+	930.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172549, intron 26 of 36)	intron (NM_172549, intron 26 of 36)	53946.0	NM_172549	104248.0	Mm.257404	NM_172549	ENSMUSG00000020196	Cabin1	A330070M20Rik|Cain|Ppp3in	calcineurin binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-61137041-3	chr2	61136934	61137134	+	845.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-161883.0	NR_045335	100038493.0	Mm.388076	NR_045335	ENSMUSG00000075325	Gm13582	-	predicted gene 13582	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44373922-4	chr7	44373814	44374014	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027049, intron 2 of 5)	intron (NM_027049, intron 2 of 5)	1116.0	NM_027049	69349.0	Mm.358922	NM_027049	ENSMUSG00000008028	1700008O03Rik	-	RIKEN cDNA 1700008O03 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36243782-2	chr1	36243682	36243882	+	878.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198899, intron 1 of 40)	intron (NM_198899, intron 1 of 40)	520.0	NM_198899	320011.0	Mm.261022	NM_198899	ENSMUSG00000037470	Uggt1	0910001L17Rik|A930007H10Rik|AA589501|AI414429|AI448372|C820010P03Rik|GT|UGT1|Ugcgl1	UDP-glucose glycoprotein glucosyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-76964210-4	chr14	76964093	76964293	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	72424.0	NM_172488	210808.0	Mm.89278	NM_172488	ENSMUSG00000044350	Lacc1	9030625A04Rik	laccase domain containing 1	protein-coding	6.41520316142655	6.20616002174084	6.03743574153315	5.76962892545392	6.70209560964929	6.58919329234543	6.51448186322066	6.62084643934926	0.518145418064835	0.0141521041714276	0.13917782446622
Merged-chr2-28497841-2	chr2	28497741	28497941	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_139197, intron 2 of 6)	intron (NM_139197, intron 2 of 6)	950.0	NM_139197	227671.0	Mm.484270	NM_139197	ENSMUSG00000026829	Gbgt1	Fgs|Fs	globoside alpha-1,3-N-acetylgalactosaminyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4609964-2	chr19	4609864	4610064	+	583.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008797, exon 10 of 20)	exon (NM_008797, exon 10 of 20)	5703.0	NM_153388	225875.0	Mm.329675	NM_153388	ENSMUSG00000045045	Lrfn4	BC023156|Salm3	leucine rich repeat and fibronectin type III domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-72436956-2	chr4	72436856	72437056	+	683.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT2B5|LTR|ERVL	235712.0	NR_027923	68285.0	Mm.37541	NR_027923		C630043F03Rik	AI851307	RIKEN cDNA C630043F03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-85117968-3	chr6	85117837	85118037	+	836.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034902, intron 2 of 2)	intron (NM_001034902, intron 2 of 2)	8157.0	NM_001034902	545861.0	Mm.321419	NM_001034902	ENSMUSG00000072952	Gm5878	EG545861	predicted gene 5878	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-10945949-4	chr16	10945851	10946051	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31154.0	NR_131135	545180.0	Mm.373756	NR_131135	ENSMUSG00000095369	Gm21859	-	predicted gene, 21859	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85524614-4	chr12	85524523	85524723	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50733.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28336830-2	chr7	28336730	28336930	+	576.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013676, intron 2 of 29)	ID4_|SINE|ID	1889.0	NM_013676	20924.0	Mm.285906	NM_013676	ENSMUSG00000003435	Supt5	AL033283|AL033321|AU019549|Spt5|Supt5h	suppressor of Ty 5	protein-coding	0.642044467304264	0.403774561569214	0.223982719223862	0.367921642883707	0.65156275495215	0.408325207404398	0.388022691849754	0.370656773588991	0.288917452563507	0.865860430546683	1
Merged-chr9-106888856-4	chr9	106888771	106888971	+	818.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_029103, exon 4 of 4)	3' UTR (NM_029103, exon 4 of 4)	-1871.0	NM_175402	109095.0	Mm.431589	NM_175402	ENSMUSG00000074102	Rbm15b	1810017N16Rik	RNA binding motif protein 15B	protein-coding	2.56030816802133	3.27360855516515	1.36580172165449	2.70285534570938	2.49349914240983	2.58183123884101	1.3749973339921	2.5235809355857	-0.636519542780297	0.499086450859781	0.937388734723802
Merged-chr16-85305206-3	chr16	85305093	85305293	+	851.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-131486.0	NM_001198826	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	3.10507827678905	3.01821944137931	2.54727204252811	2.66527855195823	1.48150271546435	1.65832021512851	1.32744584221787	2.48519894199467	-2.27816762976185	0.0117169773335707	0.121609250906731
Merged-chr2-155074397-5	chr2	155074276	155074476	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_016661, exon 1 of 10)	exon (NM_016661, exon 1 of 10)	121.0	NM_016661	269378.0	Mm.330692	NM_016661	ENSMUSG00000027597	Ahcy	AA987153|AL024110|CuBP|SAHH	S-adenosylhomocysteine hydrolase	protein-coding	5.32740566115113	4.60984806877093	3.71242150735516	5.81436211041401	5.49484133657377	4.75468083366971	5.65938310362689	5.15632096259027	0.264184702607994	0.519971231276049	0.947641799425091
Merged-chr18-5123462-4	chr18	5123350	5123550	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42281.0	NR_153824	102637682.0	Mm.451914	NR_153824		Gm26682	Gm38715	predicted gene, 26682	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171018886-4	chr1	171018784	171018984	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144559)	promoter-TSS (NM_144559)	-42.0	NM_144559	246256.0	Mm.251254	NM_144559	ENSMUSG00000059089	Fcgr4	4833442P21Rik|CD16-2|FcgRIV|FcgammaRIV|Fcgr3a|Fcrl3	Fc receptor, IgG, low affinity IV	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-59145786-2	chr2	59145686	59145886	+	709.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001362394, intron 1 of 13)	L1_Mus2|LINE|L1	14897.0	NM_001362393	227933.0	Mm.330234	NM_177650	ENSMUSG00000036641	Ccdc148	5830402J09|Gm38473	coiled-coil domain containing 148	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-73584230-4	chr7	73584117	73584317	+	886.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25822.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-63050980-4	chr14	63050873	63051073	+	996.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3982.0	NM_001034910	619548.0	Mm.387101	NM_001034910	ENSMUSG00000054763	Defb42	BD-42|Defb44|mBD-42	defensin beta 42	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-32164073-4	chr17	32163974	32164174	+	955.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008716, intron 2 of 32)	intron (NM_008716, intron 2 of 32)	2778.0	NM_008716	18131.0	Mm.439741	NM_008716	ENSMUSG00000038146	Notch3	AW229011|N3|hpbk	notch 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-79328287-4	chr15	79328205	79328405	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199024)	promoter-TSS (NM_001199024)	66.0	NM_016915	53357.0	Mm.155620	NM_016915	ENSMUSG00000042632	Pla2g6	BB112799|PNPLA9|iPLA(2)beta|iPLA2|iPLA2beta	phospholipase A2, group VI	protein-coding	5.01718322185223	4.94940649239154	5.91631611605859	4.75573667499536	5.22001699599172	5.57556690615727	5.61251319878296	5.01422471784579	0.156394788797518	0.640960422946742	0.982599433509505
Merged-chr11-6520938-4	chr11	6520809	6521009	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178440)	promoter-TSS (NM_178440)	49.0	NM_178440	246177.0	Mm.239554	NM_178440	ENSMUSG00000020437	Myo1g	E430002D17Rik	myosin IG	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-61273267-3	chr10	61273168	61273368	+	864.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001081127, exon 1 of 22)	5' UTR (NM_001081127, exon 1 of 22)	170.0	NM_001081127	237360.0	Mm.333252	NM_001081127	ENSMUSG00000059901	Adamts14	Adamts-14|TS14	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-32985220-4	chr19	32985144	32985344	+	902.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-171868.0	NR_039552	100628575.0		NR_039552	ENSMUSG00000106278	Mir3970	mmu-mir-3970|mu-mir-3970	microRNA 3970	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-55792965-3	chr1	55792848	55793048	+	703.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-138293.0	NR_045837	329159.0	Mm.98697	NR_045837	ENSMUSG00000099950	9130227L01Rik	-	RIKEN cDNA 9130227L01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-42161898-3	chr10	42161806	42162006	+	725.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR10B2|LTR|ERVK	114836.0	NM_019740	56484.0	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-113421698-2	chr6	113421598	113421798	+	908.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2350.0	NM_001346511	101122.0	Mm.31204	NM_001033204	ENSMUSG00000051169	Rpusd3	AI527266	RNA pseudouridylate synthase domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-54639891-3	chr18	54639763	54639963	+	853.7333369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_045400)	TTS (NR_045400)	28119.0	NR_045400	328957.0	Mm.402781	NR_045400		9330117O12Rik	9330117O12	RIKEN cDNA 9330117O12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-75180243-2	chr14	75180143	75180343	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008879, intron 2 of 16)	intron (NM_008879, intron 2 of 16)	43818.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-57825050-4	chr6	57824935	57825135	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146168)	promoter-TSS (NM_146168)	90.0	NM_146168	232023.0	Mm.24642	NM_146168	ENSMUSG00000037788	Vopp1	AW146242|Ecop	vesicular, overexpressed in cancer, prosurvival protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-117180692-4	chr2	117180583	117180783	+	900.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_033524, exon 7 of 7)	3' UTR (NM_033524, exon 7 of 7)	-4444.0	NR_030440	732489.0		NR_030440	ENSMUSG00000076376	Mir674	Mirn674|mir-674|mmu-mir-674	microRNA 674	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-60625403-5	chr18	60625273	60625473	+	787.049988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1068.0	NM_177340	104027.0	Mm.252321	NM_177340	ENSMUSG00000043079	Synpo	9030217H17Rik|9130229N11|9330140I15Rik|AW046661	synaptopodin	protein-coding	0.308664162390957	0.333868705675489	0.325680457354022	0.892936832952848	0.725931775137746	0.335705790232021	1.24186408373653	0.653891346385991	1.63962726152836	0.376103972696858	1
Merged-chr17-14990258-3	chr17	14990158	14990358	+	982.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001123370, intron 11 of 11)	intron (NM_001123370, intron 11 of 11)	11394.0	NM_001123370	100041574.0	Mm.393767	NM_001123370	ENSMUSG00000036552	9030025P20Rik	D17Zt9e	RIKEN cDNA 9030025P20 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167685370-4	chr2	167685276	167685476	+	924.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3539.0	NM_009883	12608.0	Mm.439656	NM_009883	ENSMUSG00000056501	Cebpb	C/EBPbeta|CRP2|IL-6DBP|LAP|LIP|NF-IL6|NF-M|Nfil6	CCAAT/enhancer binding protein (C/EBP), beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-30660753-4	chr10	30660649	30660849	+	959.341675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358842, intron 10 of 14)	intron (NM_001358842, intron 10 of 14)	-4882.0	NM_001111267	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25205523-4	chr7	25205422	25205622	+	873.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207677, intron 4 of 4)	intron (NM_207677, intron 4 of 4)	12203.0	NR_106015	102466794.0		NR_106015	ENSMUSG00000098325	Mir7048	Gm27274|mmu-mir-7048	microRNA 7048	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19028277-3	chr7	19028189	19028389	+	997.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360713, intron 1 of 22)	intron (NM_001360713, intron 1 of 22)	3912.0	NM_026605	68188.0	Mm.130902	NM_026605	ENSMUSG00000023118	Sympk	1500016F02Rik|4632415H16Rik|AA125406|AI449890|SPK|SYM	symplekin	protein-coding	0.94379244572295	2.63864793338012	1.00623812908143	2.01329264696694	1.5362644863465	1.04074429849667	2.56326575138295	1.90691537574252	0.0518781295129157	0.966766868660859	0.998431161219273
Merged-chr10-128082523-2	chr10	128082423	128082623	+	718.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016774)	promoter-TSS (NM_016774)	-784.0	NM_016774	11947.0	Mm.238973	NM_016774	ENSMUSG00000025393	Atp5b	Atp5f1b	ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	protein-coding	-0.273841333266171	-0.515709985319437	0.0236317807698191	-0.521672786456993	-0.267718571762039	-0.51494772645852	-0.518339608987275	-0.5212208576382	-1.62936653850874	0.539580107090025	1
Merged-chr15-62205347-1	chr15	62205247	62205447	+	544.0	f1_c57bl6.idr	intron (NR_132746, intron 3 of 6)	intron (NR_132746, intron 3 of 6)	14104.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28401762-2	chr17	28401662	28401862	+	717.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010220, intron 10 of 10)	L1_Mus3|LINE|L1	-36546.0	NM_021478	22157.0	Mm.42102	NM_021478	ENSMUSG00000037446	Tulp1	Tulp1l	tubby like protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-65779630-2	chr17	65779583	65779783	+	798.875	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3672.0	NR_152099	70351.0	Mm.48686	NM_146081	ENSMUSG00000061950	Ppp4r1	3110001J10Rik|Pp4r1	protein phosphatase 4, regulatory subunit 1	protein-coding	0.673701869619589	1.37671281330286	0.893274592401629	1.2765483866457	1.21190297961592	0.710735733320437	1.54241151539559	0.875437083660235	0.186904286915848	0.897766659251252	0.998431161219273
Merged-chr11-107319960-2	chr11	107319860	107320060	+	915.400024	f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 4 of 9)	B3A|SINE|B2	-130579.0	NM_001161329	68979.0	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141007011-2	chr4	141006911	141007111	+	571.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_029097, exon 29 of 29)	exon (NM_029097, exon 29 of 29)	-3413.0	NM_001161799	17150.0	Mm.7386	NM_008546	ENSMUSG00000060572	Mfap2	AI893631|Magp|Magp1	microfibrillar-associated protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-145343858-2	chr6	145343704	145343904	+	744.583374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43821.0	NR_003625	381827.0	Mm.179075	NM_001001987		1700073E17Rik	-	ribosomal protein L7 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64396391-3	chr5	64396277	64396477	+	644.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	T-rich|Low_complexity|Low_complexity	71565.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-95847192-1	chr13	95847092	95847292	+	668.0	f1_c57bl6.idr	intron (NM_027711, intron 1 of 35)	intron (NM_027711, intron 1 of 35)	44730.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	0.032580216346391	0.268949466789173	-0.106763214609275	0.792660785251629	0.0369562548441544	-0.0999016727065254	-0.105526154563196	-0.110339874099625	-3.13552872565575	0.145025163614807	1
Merged-chr7-45565332-2	chr7	45565237	45565437	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025330, intron 6 of 8)	intron (NM_025330, intron 6 of 8)	-4816.0	NM_009737	12036.0	Mm.24210	NM_009737	ENSMUSG00000030826	Bcat2	Bcat(m)|Bcat-2|Eca40	branched chain aminotransferase 2, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30963219-2	chr7	30963119	30963319	+	906.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_017405, intron 3 of 9)	PB1D7|SINE|Alu	-6416.0	NM_011680	22282.0	Mm.322453	NM_011680	ENSMUSG00000058239	Usf2	Usf-2|bHLHb12	upstream transcription factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-11431670-2	chr8	11431570	11431770	+	557.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009932, intron 30 of 47)	intron (NM_009932, intron 30 of 47)	-46259.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-76537620-4	chr12	76537516	76537716	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153804, intron 1 of 18)	intron (NM_153804, intron 1 of 18)	4056.0	NM_153804	263406.0	Mm.291854	NM_153804	ENSMUSG00000052609	Plekhg3	BC030417	pleckstrin homology domain containing, family G (with RhoGef domain) member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-113326160-2	chr6	113326060	113326260	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_149720)	promoter-TSS (NR_149720)	-816.0	NR_149720	18294.0	Mm.43612	NM_010957	ENSMUSG00000030271	Ogg1	Mmh	8-oxoguanine DNA-glycosylase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-23621209-4	chr13	23621094	23621294	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178194)	promoter-TSS (NM_178194)	-70.0	NM_178194	319179.0	Mm.440391	NM_178194	ENSMUSG00000047246	Hist1h2be	-	histone cluster 1, H2be	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91355876-2	chr16	91355776	91355976	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13D3A1|LTR|ERVK	-16907.0	NM_010509	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-134677350-2	chr5	134677250	134677450	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010717, intron 2 of 15)	intron (NM_010717, intron 2 of 15)	898.0	NM_001305875	16885.0	Mm.15409	NM_010717	ENSMUSG00000029674	Limk1	KIZ-1|LIMK-1|Limk	LIM-domain containing, protein kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-5951893-4	chr2	5951756	5951956	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081132, intron 1 of 21)	CpG	387.0	NM_001081132	326622.0	Mm.31102	NM_001081132	ENSMUSG00000043241	Upf2	-	UPF2 regulator of nonsense transcripts homolog (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-22120273-2	chr16	22120173	22120373	+	897.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_183029, intron 2 of 15)	intron (NM_183029, intron 2 of 15)	43026.0	NM_183029	319765.0	Mm.489442	NM_183029	ENSMUSG00000033581	Igf2bp2	C330012H03Rik|IMP-2|Imp2|Neilsen	insulin-like growth factor 2 mRNA binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-77980426-4	chr11	77980331	77980531	+	885.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2385.0	NM_174852	268448.0	Mm.274329	NM_174852	ENSMUSG00000037791	Phf12	2410142K10Rik|F630045O13|PF1|mKIAA1523	PHD finger protein 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124377723-2	chr6	124377623	124377823	+	728.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13237.0	NR_131162	72268.0	Mm.420740	NR_131162		1700027F06Rik	-	RIKEN cDNA 1700027F06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-102945284-3	chr2	102945186	102945386	+	848.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43621.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-46571584-2	chr18	46571468	46571668	+	913.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_173394, intron 2 of 2)	intron (NM_173394, intron 2 of 2)	2965.0	NM_173394	225471.0	Mm.149280	NM_173394	ENSMUSG00000056130	Ticam2	B430113A10|TICAM-2|TRAM|Tirp|Trif	toll-like receptor adaptor molecule 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-87663258-2	chr16	87663158	87663358	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35696.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	0.0134238428441343	-0.200024574964525	-0.0544042838054483	0.0508909859213607	-0.209060309874592	-0.199298739278058	-0.0504361294875202	0.15853760151863	-0.19880941848095	0.926749950454777	1
Merged-chr7-110121846-4	chr7	110121741	110121941	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355058)	promoter-TSS (NM_001355058)	-218.0	NM_001355058	22390.0	Mm.287173	NM_009516	ENSMUSG00000031016	Wee1	Wee1A	WEE 1 homolog 1 (S. pombe)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70113651-2	chr14	70113551	70113751	+	574.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021328, intron 1 of 8)	PB1D11|SINE|Alu	13558.0	NM_001360404	57784.0	Mm.24186	NM_021328	ENSMUSG00000022089	Bin3	1700015F07Rik	bridging integrator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76079866-2	chr15	76079766	76079966	+	667.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356629, intron 1 of 12)	intron (NM_001356629, intron 1 of 12)	1004.0	NM_001164600	67959.0	Mm.29965	NM_028364	ENSMUSG00000002524	Puf60	2410104I19Rik|2810454F19Rik|SIAHBP1	poly-U binding splicing factor 60	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-32897699-4	chr12	32897619	32897819	+	923.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56070.0	NR_044986	74076.0	Mm.50114	NR_044986	ENSMUSG00000097494	4933406C10Rik	-	RIKEN cDNA 4933406C10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89228315-4	chr3	89228212	89228412	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013605)	promoter-TSS (NM_013605)	-744.0	NM_013605	17829.0	Mm.16193	NM_013605	ENSMUSG00000042784	Muc1	CD227|EMA|Muc-1	mucin 1, transmembrane	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-15542042-3	chr9	15541945	15542145	+	778.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359604, intron 2 of 2)	intron (NM_001359604, intron 2 of 2)	36550.0	NM_133214	170748.0	Mm.86572	NM_133214	ENSMUSG00000058173	Smco4	Fn5	single-pass membrane protein with coiled-coil domains 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-111990118-4	chr8	111990030	111990230	+	979.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357185, intron 2 of 8)	intron (NM_001357185, intron 2 of 8)	2172.0	NM_001357184	30947.0	Mm.282162	NM_013925	ENSMUSG00000031949	Adat1	MMADAT1	adenosine deaminase, tRNA-specific 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153156263-4	chr2	153156146	153156346	+	795.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5055.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-112532907-3	chr13	112532801	112533001	+	800.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139299, intron 12 of 16)	intron (NM_139299, intron 12 of 16)	47761.0	NM_139299	218624.0	Mm.380801	NM_139299	ENSMUSG00000050377	Il31ra	CRL3|GLM-R|GPL|Glmr|NR10	interleukin 31 receptor A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33985547-4	chr16	33985444	33985644	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177357, intron 56 of 59)	intron (NM_177357, intron 56 of 59)	-18506.0	NM_009471	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-102248155-2	chr11	102248055	102248255	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153544)	promoter-TSS (NM_153544)	-727.0	NM_153544	217216.0	Mm.247335	NM_153544	ENSMUSG00000034773	BC030867	-	cDNA sequence BC030867	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85541386-4	chr12	85541291	85541491	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57714.0	NM_001205052	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-107610989-3	chr7	107610878	107611078	+	913.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163557, intron 1 of 25)	RMER19B|LTR|ERVK	4134.0	NM_001163557	19024.0	Mm.2817	NM_008905	ENSMUSG00000036528	Ppfibp2	Cclp1	PTPRF interacting protein, binding protein 2 (liprin beta 2)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83545648-2	chr11	83545548	83545748	+	577.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15130.0	NM_013653	20304.0	Mm.284248	NM_013653	ENSMUSG00000035042	Ccl5	MuRantes|RANTES|SISd|Scya5|TCP228	chemokine (C-C motif) ligand 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47688998-4	chr17	47688947	47689147	+	993.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025365)	promoter-TSS (NM_025365)	-661.0	NM_001164729	66119.0	Mm.89912	NM_025365	ENSMUSG00000033475	Tomm6	1110002E23Rik|AI663970	translocase of outer mitochondrial membrane 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-20815559-4	chr18	20815447	20815647	+	965.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69143.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-17776316-1	chr12	17776216	17776416	+	959.0	f1_c57bl6.idr	intron (NM_001361645, intron 2 of 4)	(TG)n|Simple_repeat|Simple_repeat	85507.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	0.704017711067212	0.437030281019589	0.427991344833661	0.420958607320727	1.03435414371781	0.439056410526032	1.26391943723027	1.11262687039052	3.06342059104357	0.0940781588803932	1
Merged-chr8-4213524-6	chr8	4213317	4213517	+	798.472229	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_207203, exon 6 of 7)	exon (NM_207203, exon 6 of 7)	3895.0	NM_207203	73072.0	Mm.477379	NM_207203	ENSMUSG00000064125	Prr36	-	proline rich 36	protein-coding	-0.856514135634246	-1.09469227775237	-1.10552271286179	-0.697223595536493	-1.11557875604084	-1.09234527728392	-1.10307093974939	-1.11268246321507	-2.58516358545631	0.423881157370444	1
Merged-chr2-4602536-2	chr2	4602459	4602659	+	548.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177844, intron 9 of 11)	intron (NM_001177844, intron 9 of 11)	42805.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-73645311-4	chr15	73645175	73645375	+	979.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-20531.0	NM_001033219	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35121387-4	chr17	35121280	35121480	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001303476)	promoter-TSS (NM_001303476)	49.0	NM_001303445	13001.0	Mm.378901	NM_009975	ENSMUSG00000024387	Csnk2b	CK II beta	casein kinase 2, beta polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-80079200-2	chr15	80079100	80079300	+	570.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028282)	promoter-TSS (NR_028282)	-621.0	NR_028282	100302601.0		NR_028282	ENSMUSG00000077734	Snord83b	MBII-10	small nucleolar RNA, C/D box 83B	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-40823575-2	chr12	40823475	40823675	+	679.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 42 of 52)	Lx8|LINE|L1	-200515.0	NM_053122	93757.0	Mm.363813	NM_053122	ENSMUSG00000056899	Immp2l	AI853880|IMP2|Tg(HLA-A/H2-D)2Enge	IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-25195325-2	chr2	25195225	25195425	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_146115, exon 2 of 2)	exon (NM_146115, exon 2 of 2)	1488.0	NM_146115	227612.0	Mm.119747	NM_146115	ENSMUSG00000059555	Tor4a	A830007P12Rik	torsin family 4, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-88235583-4	chr11	88235489	88235689	+	952.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(A)n|Simple_repeat|Simple_repeat	31201.0	NM_001291271	64656.0	Mm.168680	NM_024174	ENSMUSG00000023723	Mrps23	D11Bwg1153e|MRP-S23|Rpms23|S23mt	mitochondrial ribosomal protein S23	protein-coding	1.98226200488253	1.08939448630491	1.76332152143312	1.70491428099693	0.797199968628447	0.85079069892409	1.54881558040526	0.819000185331438	-2.38766394009669	0.0878804094052892	0.455787817886741
Merged-chr17-80295401-2	chr17	80295301	80295501	+	714.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360440, intron 2 of 3)	intron (NM_001360440, intron 2 of 3)	-4925.0	NM_001163759	106794.0	Mm.12412	NM_198942	ENSMUSG00000035051	Dhx57	AW494914	DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-55090302-6	chr15	55090237	55090437	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001355594, exon 1 of 10)	exon (NM_001355594, exon 1 of 10)	154.0	NM_183089	72107.0	Mm.486550	NM_183089	ENSMUSG00000022422	Dscc1	2010006I05Rik|2600005O03Rik|Dcc1	DNA replication and sister chromatid cohesion 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4133256-2	chr19	4133156	4133356	+	548.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_025889)	TTS (NM_025889)	6353.0	NM_144532	73660.0	Mm.379226	NM_144532	ENSMUSG00000024842	Cabp4	2410038D05Rik	calcium binding protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133169687-4	chr4	133169581	133169781	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153423, intron 1 of 8)	intron (NM_153423, intron 1 of 8)	-25974.0	NR_105984	102466215.0		NR_105984	ENSMUSG00000099202	Mir7017	Gm27945|mmu-mir-7017	microRNA 7017	ncRNA	4.88077677405715	4.9436851828599	4.79618795552576	4.9860416175739	4.13829783134093	2.58467080574495	3.96950024784258	4.23197868727129	-1.30427964157652	0.00225348584481563	0.0365043705831621
Merged-chr3-19062040-2	chr3	19061940	19062140	+	976.583374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	101055.0	NM_028840	74252.0	Mm.200383	NM_028840	ENSMUSG00000027599	Armc1	2310016N05Rik|2900046P06Rik|3110009G21Rik|AA409258|AW048872|Arcp|C330014L16Rik	armadillo repeat containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-61344262-4	chr3	61344154	61344354	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20253.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69656471-2	chr11	69656371	69656571	+	635.333374	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001301710)	TTS (NM_001301710)	1434.0	NM_009235	20670.0	Mm.347499	NM_009235	ENSMUSG00000041287	Sox15	-	SRY (sex determining region Y)-box 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-92787523-1	chr6	92787423	92787623	+	566.0	f0_balb.idr	intron (NM_175314, intron 27 of 29)	intron (NM_175314, intron 27 of 29)	-81339.0	NM_001081146	243548.0	Mm.248820	NM_001081146	ENSMUSG00000030020	Prickle2	6230400G14Rik|6720451F06Rik|mpk2	prickle planar cell polarity protein 2	protein-coding	-0.864396307252582	-0.84957506141699	-0.854472504180853	-0.858164757719666	-0.863461036107386	-0.84836658588	-0.853425226377894	0.249185994851986	3.74302279536308	0.191681524434762	1
Merged-chr5-101955245-1	chr5	101955145	101955345	+	568.0	f1_balb.idr	intron (NM_172882, intron 7 of 66)	intron (NM_172882, intron 7 of 66)	114676.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-105811299-3	chr3	105811185	105811385	+	714.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4282.0	NR_045845	433637.0	Mm.331285	NR_045845	ENSMUSG00000104835	Gm5547	EG433637	predicted gene 5547	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-69368643-2	chr12	69368543	69368743	+	679.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3507.0	NM_007481	11845.0	Mm.27308	NM_007481	ENSMUSG00000044147	Arf6	AI788669|AW496366	ADP-ribosylation factor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-85602086-2	chr7	85601986	85602186	+	717.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13376.0	NM_001105184	233445.0	Mm.389930	NM_001105184	ENSMUSG00000091205	Vmn2r71	EG233445	vomeronasal 2, receptor 71	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-51617976-6	chr11	51617907	51618107	+	775.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1766.0	NM_026631	52530.0	Mm.28203	NM_026631	ENSMUSG00000001056	Nhp2	2410130M07Rik|D11Ertd175e|Nola2	NHP2 ribonucleoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-88697549-3	chr8	88697440	88697640	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001128170, intron 1 of 17)	intron (NM_001128170, intron 1 of 17)	512.0	NM_001128171	74256.0	Mm.490395	NM_173369	ENSMUSG00000036712	Cyld	2010013M14Rik|2900009M21Rik|C130039D01Rik|CDMT|CYLD1|EAC|mKIAA0849	CYLD lysine 63 deubiquitinase	protein-coding	5.12004184045027	3.35024681093149	4.78104072016734	4.04934145816857	3.81511644750565	4.79582801160521	3.84669604634965	3.14121067324542	-0.612861784842335	0.245502445184623	0.744700405526319
Merged-chr14-30548306-8	chr14	30548237	30548437	+	917.5520630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009388)	promoter-TSS (NM_009388)	-794.0	NM_009388	21881.0	Mm.290692	NM_009388	ENSMUSG00000021957	Tkt	p68	transketolase	protein-coding	0.507331789265766	1.12466112770961	0.372888774494424	0.684098376666143	1.03680568308993	0.382413272919633	0.374607346332671	0.689046669195002	-0.27985785794671	0.872300958820578	1
Merged-chr1-182906944-3	chr1	182906848	182907048	+	827.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A|LTR|ERVL-MaLR	-47840.0	NM_016928	53791.0	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-63913735-3	chr7	63913651	63913851	+	770.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021366, intron 1 of 1)	intron (NM_021366, intron 1 of 1)	-3106.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	-0.295803517532189	-0.283309970184489	-0.28741583543181	0.224070154591327	-0.0330765798763486	0.202408195613664	-0.286511326213768	-0.29002374199998	0.457910694420545	0.852894503853602	1
Merged-chr1-53882020-2	chr1	53881909	53882109	+	693.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001883, intron 17 of 28)	intron (NM_001001883, intron 17 of 28)	32585.0	NR_106149	102465783.0		NR_106149	ENSMUSG00000098443	Mir7681	Gm27806|mmu-mir-7681	microRNA 7681	ncRNA	0.317795511306338	0.649115857796666	0.203125098803535	0.199571366017603	0.623934873161466	0.208827567083897	0.80536156708088	0.200190149330548	1.03312219327453	0.607437572854905	1
Merged-chr12-24974987-4	chr12	24974892	24975092	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081378)	promoter-TSS (NM_001081378)	60.0	NM_001081378	77480.0	Mm.250641	NM_001081378	ENSMUSG00000036333	Kidins220	3110039L19Rik|AI194387|AI316525|C330002I19Rik|mKIAA1250	kinase D-interacting substrate 220	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-151817075-4	chr1	151816962	151817162	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311165, intron 20 of 20)	intron (NM_001311165, intron 20 of 20)	61688.0	NM_001311166	66967.0	Mm.337691	NM_001039644	ENSMUSG00000043019	Edem3	2310050N11Rik	ER degradation enhancer, mannosidase alpha-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-4190845-3	chr12	4190806	4191006	+	901.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159537, intron 3 of 21)	B1_Mur4|SINE|Alu	43059.0	NM_134046	52504.0	Mm.70546	NM_134046	ENSMUSG00000020652	Cenpo	2810429O05Rik|8430427C03Rik|D12Ertd482e	centromere protein O	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-160011527-4	chr2	160011419	160011619	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5134.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	3.16020034115247	3.60524921585649	2.71377363634488	3.16545549771925	2.94503937974496	3.47468498923664	3.18870350776332	2.89175174461852	-0.0970695196968886	0.873305395432775	0.998431161219273
Merged-chr5-74641227-3	chr5	74641128	74641328	+	894.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159577, intron 2 of 10)	intron (NM_001159577, intron 2 of 10)	36644.0	NM_001159580	16924.0	Mm.440403	NM_010727	ENSMUSG00000029228	Lnx1	Lnx	ligand of numb-protein X 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-117379268-3	chr12	117379092	117379292	+	927.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42180.0	NR_044987	432713.0	Mm.459210	NR_044987	ENSMUSG00000101930	Gm5441	-	predicted gene 5441	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-22860839-2	chr8	22860739	22860939	+	915.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081149, intron 1 of 17)	intron (NM_001081149, intron 1 of 17)	1300.0	NM_001081149	244349.0	Mm.182776	NM_001081149	ENSMUSG00000031540	Kat6a	1500036M03|9930021N24Rik|MOZ|Myst3|Zfp220	K(lysine) acetyltransferase 6A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167758086-1	chr2	167757986	167758186	+	540.0	f1_balb.idr	Intergenic	Intergenic	66909.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84064842-2	chr8	84064760	84064960	+	810.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1976.0	NM_009055	19724.0	Mm.7892	NM_009055	ENSMUSG00000031706	Rfx1	AI047719|AI385641	regulatory factor X, 1 (influences HLA class II expression)	protein-coding	1.81151630968963	0.811260034040976	0.785027832774054	2.60579005425234	1.17305446569948	0.817007026783506	0.790921273982651	2.43886099070246	-0.543123165405481	0.823752110088185	0.998431161219273
Merged-chr9-44074567-2	chr9	44074467	44074667	+	933.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016808, intron 1 of 12)	intron (NM_016808, intron 1 of 12)	5138.0	NM_016808	53376.0	Mm.272770	NM_016808	ENSMUSG00000032010	Usp2	B930035K21Rik|Ubp41	ubiquitin specific peptidase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-63918420-2	chr9	63918320	63918520	+	870.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	103639.0	NM_008542	17130.0	Mm.325757	NM_008542	ENSMUSG00000036867	Smad6	Madh6|b2b390Clo	SMAD family member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-37643211-2	chr18	37643111	37643311	+	866.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_175770, exon 2 of 2)	exon (NM_175770, exon 2 of 2)	993.0	NM_175770	24074.0	Mm.236009	NM_175770	ENSMUSG00000051316	Taf7	55kDa|AI607308|BB007175|TAFII55|Taf2f	TATA-box binding protein associated factor 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-51090432-7	chr14	51090258	51090458	+	839.404785	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021472)	promoter-TSS (NM_021472)	-719.0	NM_001161731	11727.0	Mm.202665	NM_007447	ENSMUSG00000072115	Ang	AI385586|Ang1|Rnase5|Rnase5a	angiogenin, ribonuclease, RNase A family, 5	protein-coding	2.27919226828568	2.29144715809604	2.45936724984532	2.28455085797414	2.47798089143803	2.3071541166894	2.57961189012551	2.17361439212698	0.156564209385121	0.843432474972668	0.998431161219273
Merged-chr16-4626711-4	chr16	4626614	4626814	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_030205)	TTS (NM_030205)	-1768.0	NM_025571	66449.0	Mm.354760	NM_025571	ENSMUSG00000014301	Pam16	2010110I09Rik|AV006767|CGI-136|Magmas|Tim16|Timm16	presequence translocase-asssociated motor 16 homolog (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-102741878-4	chr2	102741781	102741981	+	952.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077514, intron 4 of 10)	intron (NM_001077514, intron 4 of 10)	4879.0	NR_153852	102637542.0	Mm.371582	NR_153852		Gm13872	-	predicted gene 13872	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-89210696-4	chr15	89210604	89210804	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027805)	promoter-TSS (NM_027805)	-855.0	NM_026813	71474.0	Mm.184055	NM_026813	ENSMUSG00000036561	Ppp6r2	1110033O10Rik|8430411H09Rik|B230107H12Rik|Pp6r2|Saps2	protein phosphatase 6, regulatory subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-65987003-4	chr5	65986898	65987098	+	897.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_027961)	TTS (NR_027961)	17287.0	NR_027961	231253.0	Mm.436542	NM_177679	ENSMUSG00000054598	9130230L23Rik	-	RIKEN cDNA 9130230L23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-25139181-1	chr19	25139081	25139281	+	859.0	f1_c57bl6.idr	intron (NM_028785, intron 23 of 47)	intron (NM_028785, intron 23 of 47)	-97794.0	NM_181404	107351.0	Mm.260722	NM_181404	ENSMUSG00000032702	Kank1	A930031B09Rik|AU015049|AW121052|Ankrd15|D330024H06Rik|mKIAA0172	KN motif and ankyrin repeat domains 1	protein-coding	3.02206334341345	2.77187252220476	1.3803380843269	3.31313903540918	3.64064554368809	2.19846015498945	2.11869842411907	1.6257331681247	-0.23423269803857	0.799535962585254	0.998431161219273
Merged-chr6-115762234-4	chr6	115762226	115762426	+	825.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001168257, exon 1 of 11)	5' UTR (NM_001168257, exon 1 of 11)	140.0	NM_001168257	94346.0	Mm.29739	NM_144805	ENSMUSG00000059900	Tmem40	9030407H20Rik|AV091463|W64236	transmembrane protein 40	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-32511123-4	chr6	32511014	32511214	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040277)	promoter-TSS (NR_040277)	-27.0	NR_040277	319849.0	Mm.440860	NR_040277	ENSMUSG00000086763	Plxna4os1	B230378P21Rik	plexin A4, opposite strand 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-67118089-2	chr15	67117989	67118189	+	746.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_009177, intron 3 of 8)	(CA)n|Simple_repeat|Simple_repeat	58793.0	NM_009177	20442.0	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-41640292-4	chr4	41640204	41640404	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027147)	promoter-TSS (NM_027147)	-2.0	NM_027147	69638.0	Mm.372459	NM_027147	ENSMUSG00000028445	Enho	1110065P19Rik|2310040A07Rik	energy homeostasis associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-25504920-4	chr9	25504825	25505025	+	957.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 2 of 7)	intron (NM_026189, intron 2 of 7)	23328.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-67461493-3	chr7	67461403	67461603	+	861.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-88645.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	2.00998408080389	1.41947728337395	2.08602845319288	1.35343947917281	2.32045143360264	1.792348097266	1.57683106716343	1.68457092057664	0.343523480879285	0.741603768924562	0.998431161219273
Merged-chr15-63895760-2	chr15	63895660	63895860	+	621.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028992, intron 5 of 11)	B3|SINE|B2	15053.0	NR_108053	665769.0	Mm.290602	NR_108053	ENSMUSG00000093867	Gsdmcl2	4921501E01Rik|4930453O09Rik|Gm7779	gasdermin C-like 2	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-89644323-4	chr1	89644230	89644430	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037136, intron 6 of 16)	intron (NM_001037136, intron 6 of 16)	39562.0	NR_015540	74403.0	Mm.444291	NR_015540		4933400F21Rik	1700091C04Rik|4930565K10Rik	RIKEN cDNA 4933400F21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-120452423-4	chr14	120452327	120452527	+	848.2708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26034.0	NM_029519	76108.0	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-109923564-4	chr5	109923450	109923650	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10013.0	NR_040366	100642166.0		NR_040366	ENSMUSG00000090015	Gm15446	-	predicted gene 15446	ncRNA	3.04739738778295	3.65931120252015	2.63275254390825	3.00791917041063	1.2314644147915	1.38861748324316	1.87396121610573	2.56670932078133	-2.55702737429777	0.00379053409774533	0.0539701282888629
Merged-chr2-156311539-2	chr2	156311426	156311626	+	672.0	f0_c57.idr|f1_c57bl6.idr	promoter-TSS (NM_001316755)	promoter-TSS (NM_001316755)	-947.0	NM_027585	70873.0	Mm.475234	NM_027585	ENSMUSG00000038085	Cnbd2	4921517L17Rik|5430421B09Rik|Cris	cyclic nucleotide binding domain containing 2	protein-coding	0.27482334817207	0.461876320299419	0.881299081412401	0.663804306912652	0.275752492380641	0.466460194692206	0.286026914861998	0.669278706812704	-1.17300036964081	0.528833196972299	1
Merged-chr17-35738462-2	chr17	35738340	35738540	+	586.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-33841.0	NM_007584	12305.0	Mm.5021	NM_007584	ENSMUSG00000003534	Ddr1	6030432F18|AI323681|CD167a|Cak|Nep|PTK3A	discoidin domain receptor family, member 1	protein-coding	-0.00127706207589893	0.466051136255204	-0.128646251137588	-0.132126117602541	0.123257004280195	-0.123102681255089	-0.127649989310319	0.281581574145515	-0.240408469832797	0.913236640714376	1
Merged-chr1-16619351-4	chr1	16619250	16619450	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025773)	promoter-TSS (NM_025773)	-12.0	NM_001271017	66799.0	Mm.122430	NM_025773	ENSMUSG00000025939	Ube2w	6130401J04Rik	ubiquitin-conjugating enzyme E2W (putative)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-43569990-1	chr17	43569890	43570090	+	1000.0	f0_balb.idr	intron (NM_013737, intron 1 of 11)	intron (NM_013737, intron 1 of 11)	1539.0	NM_013737	27226.0	Mm.9277	NM_013737	ENSMUSG00000023913	Pla2g7	PAF-AH|R75400	phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	protein-coding	0.315659873924901	0.345033171773779	0.980178575232928	0.328135783379521	0.871550822671806	1.37088184005872	0.546141803960584	0.329435568048472	1.62845681427399	0.373451040972058	1
Merged-chr17-31558194-4	chr17	31558135	31558335	+	897.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-6538.0	NR_027493	18771.0	Mm.259295	NM_016670	ENSMUSG00000006705	Pknox1	D17Wsu76e|PREP1	Pbx/knotted 1 homeobox	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106672051-2	chr11	106671951	106672151	+	654.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001305158, intron 12 of 14)	intron (NM_001305158, intron 12 of 14)	43230.0	NM_001305158	18613.0	Mm.343951	NM_008816	ENSMUSG00000020717	Pecam1	C85791|Cd31|PECAM-1|Pecam	platelet/endothelial cell adhesion molecule 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-67725199-2	chr18	67725099	67725299	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001127177)	promoter-TSS (NM_001127177)	-578.0	NM_008977	19255.0	Mm.260433	NM_008977	ENSMUSG00000024539	Ptpn2	AI325124|Ptpt|TC-PTP	protein tyrosine phosphatase, non-receptor type 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-97776856-2	chr4	97776756	97776956	+	785.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001122953)	promoter-TSS (NM_001122953)	-770.0	NM_001122953	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-20056493-4	chr10	20056404	20056604	+	982.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008580, exon 9 of 30)	exon (NM_008580, exon 9 of 30)	-92416.0	NM_008635	17761.0	Mm.20928	NM_008635	ENSMUSG00000019996	Map7	E-MAP-115|MAP-7|Mtap7|R75000|mshi|mste|ste	microtubule-associated protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-10449269-4	chr10	10449189	10449389	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127353, intron 2 of 36)	intron (NM_001127353, intron 2 of 36)	23025.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	1.59544817800631	1.65130923736648	1.45011458062006	1.05550869556099	1.71077218988492	1.92230797137629	1.60978910765287	1.79777067329391	1.05143535808305	0.344848381493481	0.845794803766071
Merged-chr10-60408339-2	chr10	60408239	60408439	+	833.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252635, intron 26 of 68)	intron (NM_001252635, intron 26 of 68)	8613.0	NM_001164374	100302688.0	Mm.444135	NM_001164374	ENSMUSG00000090439	Gm17455	-	predicted gene, 17455	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-26441410-2	chr2	26441310	26441510	+	649.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_153125, exon 2 of 30)	exon (NM_153125, exon 2 of 30)	3806.0	NM_153125	227648.0	Mm.206371	NM_153125	ENSMUSG00000026924	Sec16a	AU024582|C230052J16Rik	SEC16 homolog A, endoplasmic reticulum export factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-139188122-4	chr4	139188039	139188239	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4760.0	NM_009798	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	3.15511692225842	3.05833728772198	3.062446937453	2.7625160657243	3.37748087204587	3.18916859217675	3.3564904114218	3.08804886514952	0.417451005480483	0.481256513921044	0.929210758613564
Merged-chr4-9060318-4	chr4	9060177	9060377	+	918.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-209016.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128333820-2	chr2	128333720	128333920	+	977.833374	f1_balb.idr|f1_c57bl6.idr	intron (NR_028590, intron 1 of 2)	MTE2b|LTR|ERVL-MaLR	95531.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-108895113-3	chr8	108895038	108895238	+	680.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007496, intron 4 of 9)	intron (NM_007496, intron 4 of 9)	-41722.0	NR_037295	100526511.0		NR_037295	ENSMUSG00000093241	Mir3108	mir-3108|mmu-mir-3108	microRNA 3108	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-5445853-2	chr12	5445753	5445953	+	571.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	69351.0	NR_015579	72669.0	Mm.10434	NM_028318		2810032G03Rik	AI461720	RIKEN cDNA 2810032G03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-98845797-2	chr15	98845697	98845897	+	628.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001033276, exon 40 of 55)	exon (NM_001033276, exon 40 of 55)	-14289.0	NM_016781	19082.0	Mm.6670	NM_016781	ENSMUSG00000067713	Prkag1	AA571379|BB036179|Prkaac	protein kinase, AMP-activated, gamma 1 non-catalytic subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120541235-2	chr8	120541135	120541335	+	721.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145896, intron 1 of 15)	B2_Mm2|SINE|B2	2539.0	NR_106159	102466849.0		NR_106159	ENSMUSG00000098280	Mir7687	Gm27573|mmu-mir-7687	microRNA 7687	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-52422746-2	chr2	52422646	52422846	+	663.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_182994, intron 1 of 5)	intron (NM_182994, intron 1 of 5)	2128.0	NM_182994	75423.0	Mm.314378	NM_182994	ENSMUSG00000036093	Arl5a	2410015N24Rik|2810410P22Rik|AA408731|AW610751|Arl5|T25534	ADP-ribosylation factor-like 5A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-35196068-4	chr2	35195977	35196177	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026697, intron 1 of 7)	B1F1|SINE|Alu	5043.0	NM_026697	68365.0	Mm.198264	NM_026697	ENSMUSG00000026878	Rab14	0610030G24Rik|2810475J17Rik|A830021G03Rik|AI314285|AI649155|D030017L14Rik	RAB14, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94609420-4	chr10	94609323	94609523	+	995.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23224.0	NR_106070	102466817.0		NR_106070	ENSMUSG00000098544	Mir7211	Gm27536|mmu-mir-7211	microRNA 7211	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-108991789-4	chr9	108991680	108991880	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173019)	promoter-TSS (NM_173019)	-122.0	NM_173019	270198.0	Mm.132391	NM_173019	ENSMUSG00000025648	Pfkfb4	C230090D14	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-120915434-4	chr6	120915350	120915550	+	886.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007544, intron 1 of 5)	intron (NM_007544, intron 1 of 5)	1374.0	NM_007544	12122.0	Mm.235081	NM_007544	ENSMUSG00000004446	Bid	2700049M22Rik|AI875481|AU022477	BH3 interacting domain death agonist	protein-coding	1.66611392474413	3.0718852955278	2.34130825086182	1.91234128912664	1.94890696290462	1.19348771965973	1.16160991108853	2.28265062463835	-1.47198853459383	0.16295951824122	0.625326748355486
Merged-chr9-118697823-2	chr9	118697752	118697952	+	691.974976	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 14 of 27)	intron (NM_133721, intron 14 of 27)	-13840.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0.807594542257387	0.680039168506098	0.669033166631717	1.53284952576495	1.07634209386545	1.36171438369398	1.30603291320775	0.847856597096966	0.733544896216025	0.616604274092176	0.97736719401417
Merged-chr7-127212660-2	chr7	127212560	127212760	+	888.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016754, intron 1 of 6)	ID_B1|SINE|B4	1052.0	NM_016754	17907.0	Mm.14526	NM_016754	ENSMUSG00000030672	Mylpf	2410014J02Rik|MLC-2|Mlc2	myosin light chain, phosphorylatable, fast skeletal muscle	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-59252144-3	chr10	59252033	59252233	+	703.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30211.0	NM_172939	268301.0	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34652783-2	chr17	34652683	34652883	+	855.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_017406, exon 12 of 18)	exon (NM_017406, exon 12 of 18)	5637.0	NM_017406	12915.0	Mm.4068	NM_017406	ENSMUSG00000015461	Atf6b	AA617266|ATF6beta|Creb-rp|Crebl1	activating transcription factor 6 beta	protein-coding	-1.53362919331644	-1.50201671710775	-1.51157659084044	-1.08120497225282	-1.53141005593807	-1.49994505258991	-1.50941244497383	-1.51802371459528	-1.94474658522739	0.577200604274218	1
Merged-chr6-29536092-2	chr6	29535992	29536192	+	550.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_012057, exon 7 of 9)	exon (NM_012057, exon 7 of 9)	6810.0	NM_001252382	27056.0	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-98215763-3	chr12	98215662	98215862	+	934.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008079, intron 12 of 16)	intron (NM_008079, intron 12 of 16)	43697.0	NM_008079	14420.0	Mm.5120	NM_008079	ENSMUSG00000021003	Galc	2310068B06Rik|A930008M05Rik|AW212969|AW413532|Gacy|twi|twitcher	galactosylceramidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-102800744-2	chr2	102800644	102800844	+	643.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53984.0	NR_153853	102637542.0	Mm.371582	NR_153852		Gm13872	-	predicted gene 13872	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95635769-4	chr3	95635668	95635868	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10788.0	NM_001026212	56205.0	Mm.241365	NM_019561	ENSMUSG00000038619	Ensa	1700020C18Rik|2610007F17Rik|AI451924	endosulfine alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-100452595-4	chr13	100452517	100452717	+	980.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008670, intron 1 of 15)	intron (NM_008670, intron 1 of 15)	247.0	NM_008670	17940.0	Mm.6898	NM_008670	ENSMUSG00000021640	Naip1	AV364616|Birc1a|D13Lsd1|Naip|Naip-rs1	NLR family, apoptosis inhibitory protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-60020044-4	chr2	60019928	60020128	+	979.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001182, intron 2 of 35)	MTE2b|LTR|ERVL-MaLR	105712.0	NM_001001182	407823.0	Mm.228071	NM_001001182	ENSMUSG00000026987	Baz2b	5830435C13Rik|BC053917|D2Ertd794e	bromodomain adjacent to zinc finger domain, 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-101102885-3	chr12	101102797	101102997	+	814.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-19195.0	NM_001160214	68734.0	Mm.87077	NM_211355	ENSMUSG00000041846	Ppp4r3a	1110034C04Rik|BC064465|Smek1|mKIAA2010	protein phosphatase 4 regulatory subunit 3A	protein-coding	1.38920510197568	1.5511861371005	2.535869277786	2.7849036249951	1.40015036233297	1.98789449382411	2.07810605428732	3.05073960484224	0.157661811160721	0.874650228391388	0.998431161219273
Merged-chr13-43399677-2	chr13	43399577	43399777	+	708.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_023554, intron 3 of 7)	intron (NM_023554, intron 3 of 7)	1301.0	NM_023554	70078.0	Mm.439927	NM_023554	ENSMUSG00000063200	Nol7	2210008F15Rik|5730556I21Rik|NOP27|RARG-1	nucleolar protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-139823566-2	chr6	139823481	139823681	+	585.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_207683, intron 17 of 31)	intron (NM_207683, intron 17 of 31)	-17864.0	NM_011084	18705.0	Mm.333471	NM_011084	ENSMUSG00000030228	Pik3c2g	C80387|PI3K-C2-gamma	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-55355823-2	chr3	55355723	55355923	+	708.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357475, intron 3 of 16)	intron (NM_001357475, intron 3 of 16)	-105905.0	NM_001195539	13175.0	Mm.393242	NM_019978	ENSMUSG00000027797	Dclk1	1700113D08Rik|2810480F11Rik|AI836758|Click-I|Cpg16|Dcamkl1|Dcl|Dclk|mKIAA0369	doublecortin-like kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-112473994-1	chr12	112473894	112474094	+	547.0	f0_balb.idr	Intergenic	Intergenic	-15454.0	NM_177039	319942.0	Mm.185209	NM_177039	ENSMUSG00000043122	A530016L24Rik	Nrac	RIKEN cDNA A530016L24 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-78054823-4	chr10	78054740	78054940	+	871.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001284199)	promoter-TSS (NM_001284199)	-495.0	NM_001284198	54427.0	Mm.13433	NM_019448	ENSMUSG00000000730	Dnmt3l	D6Ertd14e|ecat7	DNA (cytosine-5-)-methyltransferase 3-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94047266-1	chr10	94047166	94047366	+	576.0	f0_c57.idr	intron (NM_053072, intron 2 of 20)	intron (NM_053072, intron 2 of 20)	11265.0	NM_053072	13998.0	Mm.269596	NM_053072	ENSMUSG00000020021	Fgd6	AA123052|Etohd4|ZFYVE24	FYVE, RhoGEF and PH domain containing 6	protein-coding	1.89527934512337	1.85001152537228	1.62330820421525	2.3807684474044	1.14037736032733	1.86353104235989	1.80239322813512	2.54334999222932	-0.0611867175576134	0.953345967166658	0.998431161219273
Merged-chr15-27467038-3	chr15	27466930	27467130	+	790.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_020332, exon 1 of 12)	exon (NM_020332, exon 1 of 12)	353.0	NM_020332	11732.0	Mm.265264	NM_020332	ENSMUSG00000022265	Ank	Ankh|D15Ertd221e|ank|mKIAA1581	progressive ankylosis	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120354644-2	chr11	120354544	120354744	+	879.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	5966.0	NR_038126	66838.0	Mm.375010	NR_038126	ENSMUSG00000043644	0610009L18Rik	-	RIKEN cDNA 0610009L18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-82623062-8	chr10	82622908	82623108	+	907.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001135567, exon 1 of 3)	5' UTR (NM_001135567, exon 1 of 3)	220.0	NM_001135569	544717.0	Mm.334867	NM_001135567	ENSMUSG00000063320	1190007I07Rik	-	RIKEN cDNA 1190007I07 gene	protein-coding	3.26499085072809	2.40811838618481	3.39193259190618	3.07466460728117	2.86090283615082	2.59414657695079	2.6514621075993	3.24651217645568	-0.400662943906956	0.546959669461651	0.957629043069512
Merged-chr4-106228800-2	chr4	106228700	106228900	+	655.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12413.0	NR_151521	105244641.0	Mm.404914	NR_151521		Gm12724	-	predicted gene 12724	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-64301447-7	chr1	64301363	64301563	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-180074.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-123200977-4	chr7	123200859	123201059	+	800.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13907.0	NM_146198	233836.0	Mm.211838	NM_146198	ENSMUSG00000030769	Slc5a11	2010013B02Rik|Kst1|RKST2|SMIT2|Slc5a10	solute carrier family 5 (sodium/glucose cotransporter), member 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-57514922-2	chr8	57514822	57515022	+	602.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008252, exon 5 of 5)	3' UTR (NM_008252, exon 5 of 5)	3079.0	NM_008252	97165.0	Mm.276881	NM_008252	ENSMUSG00000054717	Hmgb2	C80539|HMG-2|Hmg2	high mobility group box 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-23287488-4	chr16	23287386	23287586	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252505, intron 2 of 7)	intron (NM_001252505, intron 2 of 7)	-2984.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-75314225-4	chr9	75314126	75314326	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_073186, exon 1 of 12)	non-coding (NR_073186, exon 1 of 12)	158.0	NM_138719	14697.0	Mm.17604	NM_010313	ENSMUSG00000032192	Gnb5	GBS|Gbeta5|flr	guanine nucleotide binding protein (G protein), beta 5	protein-coding	3.92223711080926	4.58084529499013	4.39300435524155	4.01145776082408	4.83974315235916	2.72131441935276	3.88690573145083	3.33672575992127	-0.400359689670696	0.45827811997234	0.919570891419578
Merged-chr14-54741785-2	chr14	54741685	54741885	+	678.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016972, intron 3 of 10)	intron (NM_016972, intron 3 of 10)	-29611.0	NM_207131	110794.0	Mm.236223	NM_207131	ENSMUSG00000052435	Cebpe	C/EBPe|C/EBPepsilon|CRP1|Gm294	CCAAT/enhancer binding protein (C/EBP), epsilon	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-34311925-2	chr14	34311825	34312025	+	654.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008133, intron 1 of 12)	intron (NM_008133, intron 1 of 12)	1198.0	NM_008133	14661.0	Mm.10600	NM_008133	ENSMUSG00000021794	Glud1	AI118167|Gdh-X|Glud|Gludl	glutamate dehydrogenase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-59163434-4	chr7	59163326	59163526	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65324.0	NM_001033962	22215.0	Mm.9002	NM_011668	ENSMUSG00000025326	Ube3a	4732496B02|5830462N02Rik|A130086L21Rik|Hpve6a	ubiquitin protein ligase E3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-19528987-4	chr2	19528880	19529080	+	631.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027600, intron 4 of 16)	intron (NM_027600, intron 4 of 16)	24930.0	NM_027600	70909.0	Mm.158488	NM_027600	ENSMUSG00000026734	4921504E06Rik	4921522E24Rik	RIKEN cDNA 4921504E06 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-130387451-4	chr1	130387328	130387528	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35396.0	NR_151525	102640368.0		NR_151525	ENSMUSG00000087691	Gm15674	-	predicted gene 15674	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-45219555-4	chr14	45219474	45219674	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027518)	promoter-TSS (NM_027518)	-143.0	NM_027518	70713.0	Mm.343793	NM_027518	ENSMUSG00000049092	Gpr137c	6330416L11Rik|Gm908|TM7SF1L2	G protein-coupled receptor 137C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-122293375-2	chr9	122293275	122293475	+	666.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271873, intron 1 of 12)	B4A|SINE|B4	1048.0	NM_001271873	102566.0	Mm.87676	NM_133979	ENSMUSG00000037949	Ano10	AI604832|Tmem16k	anoctamin 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-87983968-2	chr13	87983868	87984068	+	663.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3_Mus|LINE|L1	-837504.0	NM_010103	13612.0	Mm.125580	NM_010103	ENSMUSG00000034488	Edil3	Del-1|Del1|Sox2-cre|Sox2Cre|Tg(Sox2-cre)1Amc	EGF-like repeats and discoidin I-like domains 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-43951813-4	chr16	43951701	43951901	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027801, intron 12 of 15)	intron (NM_027801, intron 12 of 15)	27249.0	NM_001007460	332175.0	Mm.327852	NM_001007460	ENSMUSG00000036304	Zdhhc23	Gm1751|Gm779|nidd	zinc finger, DHHC domain containing 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-23969091-4	chr5	23968980	23969180	+	955.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053090, intron 10 of 10)	intron (NM_053090, intron 10 of 10)	61232.0	NM_001310471	84652.0	Mm.304976	NM_053090	ENSMUSG00000028995	Fam126a	AB030242|Drctnnb1a	family with sequence similarity 126, member A	protein-coding	2.92942173923866	3.66128935645613	3.0845635513661	2.25444063494606	2.44238888433537	2.74731078286467	3.43607132446299	3.10237251798264	-0.155278280776377	0.821537779286404	0.998431161219273
Merged-chr13-73718445-4	chr13	73718334	73718534	+	804.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17654.0	NM_028878	74338.0	Mm.271635	NM_028878	ENSMUSG00000021565	Slc6a19	4632401C08Rik|B<0>AT1	solute carrier family 6 (neurotransmitter transporter), member 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19020595-2	chr7	19020495	19020695	+	642.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008260, intron 1 of 1)	intron (NM_008260, intron 1 of 1)	2944.0	NM_008260	15377.0	Mm.42260	NM_008260	ENSMUSG00000040891	Foxa3	Hnf-3g|Hnf3g|Tcf-3g|Tcf3g	forkhead box A3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-51539808-4	chr11	51539715	51539915	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153393, intron 5 of 28)	intron (NM_153393, intron 5 of 28)	-44942.0	NM_028398	72947.0	Mm.256875	NM_028398	ENSMUSG00000020359	Phykpl	2900006B13Rik|Agxt2l2	5-phosphohydroxy-L-lysine phospholyase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-119458468-4	chr1	119458367	119458567	+	839.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36219.0	NM_008381	16324.0	Mm.3092	NM_008381	ENSMUSG00000037035	Inhbb	-	inhibin beta-B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-12246636-2	chr15	12246536	12246736	+	842.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356498, intron 7 of 15)	intron (NM_001356498, intron 7 of 15)	41608.0	NM_172958	268783.0	Mm.54460	NM_172958	ENSMUSG00000039458	Mtmr12	3Pap|4932703C11|C730015A02Rik|Pip3ap|mKIAA1682	myotubularin related protein 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59389439-4	chr15	59389335	59389535	+	909.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164604, intron 2 of 4)	intron (NM_001164604, intron 2 of 4)	15237.0	NM_001164604	68501.0	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-122811884-4	chr6	122811784	122811984	+	994.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8300.0	NM_021899	60611.0	Mm.87142	NM_021899	ENSMUSG00000003154	Foxj2	Fhx	forkhead box J2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-85324102-3	chr11	85323987	85324187	+	983.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016910, intron 1 of 5)	intron (NM_016910, intron 1 of 5)	12833.0	NM_016910	53892.0	Mm.45609	NM_016910	ENSMUSG00000020525	Ppm1d	AV338790|Wip1	protein phosphatase 1D magnesium-dependent, delta isoform	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-92509859-3	chr5	92509770	92509970	+	666.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4213.0	NM_007644	12492.0	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-136125210-1	chr4	136125110	136125310	+	647.0	f0_c57.idr	Intergenic	Intergenic	-18612.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	3.07002742546191	2.66833895090076	2.85555180350829	1.36009286947161	2.17591590661893	1.9453438356914	2.59749247090027	2.15418944616156	-0.847825369441816	0.340074011075024	0.840830533493442
Merged-chr4-43556116-4	chr4	43556031	43556231	+	960.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011602, intron 3 of 56)	intron (NM_011602, intron 3 of 56)	6452.0	NM_011602	21894.0	Mm.208601	NM_011602	ENSMUSG00000028465	Tln1	Tln	talin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-130411950-4	chr2	130411857	130412057	+	714.224976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5435.0	NM_025753	66766.0	Mm.174834	NM_025753	ENSMUSG00000049692	Tmem239	4933425O20Rik	transmembrane 239	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-25990226-6	chr8	25990083	25990283	+	923.288879	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029037, intron 1 of 4)	intron (NM_029037, intron 1 of 4)	3938.0	NM_029037	74653.0	Mm.17631	NM_029037	ENSMUSG00000037251	Pomk	4930444A02Rik|Sgk196	protein-O-mannose kinase	protein-coding	-1.26297147305202	-1.51336964835199	-1.52290115558626	-1.53073061942109	-1.54267576991114	-1.36133000838898	-1.52074343127311	-1.52932914913802	-0.563746499231123	0.872676935132172	1
Merged-chr8-119877307-2	chr8	119877207	119877407	+	627.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_146219)	TTS (NM_146219)	15002.0	NM_146219	234796.0	Mm.86446	NM_146219	ENSMUSG00000031828	Klhl36	-	kelch-like 36	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99139959-6	chr7	99139884	99140084	+	904.69165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 1 of 14)	intron (NM_178635, intron 1 of 14)	1160.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	2.49482550707452	2.91867962555701	2.82102876054808	3.4935122965498	3.04539379223924	2.17835087861515	2.45719617392536	3.19452173797666	-0.349862672890584	0.623104763486573	0.980259659844413
Merged-chr19-55658153-2	chr19	55658053	55658253	+	635.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045318, intron 2 of 3)	RSINE1|SINE|B4	44051.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-72662390-2	chr9	72662290	72662490	+	608.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010890)	promoter-TSS (NM_010890)	59.0	NM_010890	17999.0	Mm.279923	NM_010890	ENSMUSG00000032216	Nedd4	AA959633|AL023035|AU019897|E430025J12Rik|EG639396|Gm7265|KIAA0093|Nedd4-1|Nedd4a	neural precursor cell expressed, developmentally down-regulated 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76477833-2	chr15	76477733	76477933	+	971.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013481)	promoter-TSS (NM_013481)	471.0	NR_138589	15499.0	Mm.347444	NM_008296	ENSMUSG00000022556	Hsf1	AA960185|HSTF|HSTF 1|Hsf1alpha|Hsf1beta	heat shock factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-27441433-1	chr7	27441333	27441533	+	689.0	f1_c57bl6.idr	intron (NM_032610, intron 2 of 35)	intron (NM_032610, intron 2 of 35)	5156.0	NM_032610	80297.0	Mm.459123	NM_032610	ENSMUSG00000011751	Sptbn4	1700022P15Rik|5830426A08Rik|ROSA62|SpbIV|Spnb4|dyn|lnd|nmf261|nmf379|qv	spectrin beta, non-erythrocytic 4	protein-coding	1.18378555020389	2.31138454620007	3.03308156135287	2.28250409665587	1.93572508391596	2.57431221732352	1.27214289596372	2.59377969537227	-0.355441090241825	0.729276710474668	0.998431161219273
Merged-chr13-6647873-4	chr13	6647766	6647966	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019703, intron 1 of 21)	intron (NM_019703, intron 1 of 21)	905.0	NM_019703	56421.0	Mm.273874	NM_019703	ENSMUSG00000021196	Pfkp	1200015H23Rik|9330125N24Rik|ATP-PFK|PFK-C|PFK-P	phosphofructokinase, platelet	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-82083391-5	chr10	82083318	82083518	+	789.609558	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	35291.0	NM_001024626	408062.0	Mm.391409	NM_001024626	ENSMUSG00000061371	Zfp873	-	zinc finger protein 873	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-98087738-4	chr3	98087649	98087849	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010928, intron 5 of 33)	intron (NM_010928, intron 5 of 33)	-72885.0	NM_027665	71078.0	Mm.50711	NM_027665	ENSMUSG00000043468	Adam30	4933424D07Rik|svph4	a disintegrin and metallopeptidase domain 30	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-63540416-4	chr15	63540333	63540533	+	893.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-60825.0	NR_045279	432958.0	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	4.27507094477282	3.65887861544035	4.60973867792933	4.84815717928529	4.82420644960807	3.57686770402661	4.77449696779057	4.97026561303337	0.278359993770204	0.524957468585238	0.948340152465298
Merged-chr5-65717590-4	chr5	65717492	65717692	+	959.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19736.0	NM_001081321	71521.0	Mm.278974	NM_027818	ENSMUSG00000029202	Pds5a	9030416H16Rik|E230024D05Rik|mKIAA0648	PDS5 cohesin associated factor A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-86398216-2	chr6	86398116	86398316	+	959.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1066.0	NM_025823	66881.0	Mm.30849	NM_025823	ENSMUSG00000029998	Pcyox1	1200015P13Rik|AI115532|AI448340|PCL1|Pcly	prenylcysteine oxidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-96655689-4	chr15	96655577	96655777	+	974.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-12764.0	NM_001166458	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120030233-2	chr11	120030133	120030333	+	865.9285890000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001198785, intron 1 of 13)	intron (NM_001198785, intron 1 of 13)	11548.0	NM_001198787	11302.0	Mm.6826	NM_007377	ENSMUSG00000025375	Aatk	AATYK|aatyk1|mKIAA0641	apoptosis-associated tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-142080764-2	chr4	142080664	142080864	+	591.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145402, intron 1 of 2)	intron (NM_145402, intron 1 of 2)	-3534.0	NR_027137	100038693.0	Mm.402714	NR_027137	ENSMUSG00000073728	Tmem51os1	Gm10565|Tmem51as1	Tmem51 opposite strand 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-21608229-2	chr11	21608127	21608327	+	871.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_145425, intron 1 of 17)	MTA_Mm|LTR|ERVL-MaLR	35946.0	NM_145425	216560.0	Mm.138090	NM_145425	ENSMUSG00000020319	Wdpcp	AV249152	WD repeat containing planar cell polarity effector	protein-coding	1.05143597177987	1.00059861061158	0.773395529181603	0.94980405277352	1.3904452186598	1.33939088549438	1.14641778835268	1.73516632656762	2.22312326689861	0.0989708237989107	0.489469061805165
Merged-chr7-45513763-1	chr7	45513663	45513863	+	614.0	f1_c57bl6.idr	promoter-TSS (NM_008807)	promoter-TSS (NM_008807)	57.0	NM_001045555	56734.0	Mm.439742	NM_008807	ENSMUSG00000023467	Tulp2	Pdet	tubby-like protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-9682723-4	chr4	9682646	9682846	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13402.0	NM_001290367	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	6.32325202138583	6.3414750273009	6.09845996569216	5.90180331831403	5.89725997954603	6.32148705312296	5.76010151877938	6.24862005788666	-0.114526678385655	0.623010291872469	0.980259659844413
Merged-chr7-132366027-2	chr7	132365927	132366127	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48799.0	NM_029935	77590.0	Mm.213582	NM_029935	ENSMUSG00000030930	Chst15	4631426J05Rik|BRAG|GalNAc4S-6ST|GalNAcS-6ST|MAd5|mKIAA0598	carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-79525719-4	chr12	79525619	79525819	+	889.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	228368.0	NM_001252562	19363.0	Mm.341756	NM_009014	ENSMUSG00000059060	Rad51b	AI553500|R51H2|Rad51l1|mREC2	RAD51 paralog B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-16593087-4	chr10	16592986	16593186	+	953.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	502696.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-111941361-1	chr8	111941261	111941461	+	788.0	f0_c57.idr	intron (NM_026693, intron 2 of 3)	intron (NM_026693, intron 2 of 3)	658.0	NM_026693	93739.0	Mm.371666	NM_026693	ENSMUSG00000031950	Gabarapl2	0610012F20Rik|2900019O08Rik|AI173605|GATE-16|Gef2	gamma-aminobutyric acid (GABA) A receptor-associated protein-like 2	protein-coding	2.3465949585853	2.30078474217084	1.05296298739961	1.47833863757579	2.36795054150486	2.42188354650743	1.05923759071051	1.03448753593027	-0.0174392101395193	0.98871275484384	0.998431161219273
Merged-chr7-35396922-4	chr7	35396793	35396993	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178643)	promoter-TSS (NM_178643)	-126.0	NM_178643	101831.0	Mm.389855	NM_178643	ENSMUSG00000030493	Faap24	AW124591|AW538696|C230052I12Rik	Fanconi anemia core complex associated protein 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-120297923-2	chr2	120297823	120298023	+	716.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8854.0	NM_001024137	78390.0	Mm.330507	NM_001024137	ENSMUSG00000070719	Pla2g4d	2610311B01Rik|Pla2delta|cPLA2delta	phospholipase A2, group IVD	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-110051112-2	chr4	110051012	110051212	+	722.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	73087.0	NM_172296	242620.0	Mm.32825	NM_172296	ENSMUSG00000047143	Dmrta2	Dmrt5	doublesex and mab-3 related transcription factor like family A2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-119086578-2	chr9	119086478	119086678	+	853.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019676, intron 1 of 14)	intron (NM_019676, intron 1 of 14)	1683.0	NM_001293648	18799.0	Mm.23963	NM_019676	ENSMUSG00000010660	Plcd1	AW212592|C79986	phospholipase C, delta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-58720941-4	chr1	58720828	58721028	+	860.1166380000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355056, intron 1 of 8)	intron (NM_001355056, intron 1 of 8)	7642.0	NM_001355056	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-7845014-2	chr9	7844914	7845114	+	742.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-7957.0	NM_007465	11797.0	Mm.335659	NM_007465	ENSMUSG00000057367	Birc2	AW146227|Api1|Api2|Birc3|C-IAP1|C330006D17Rik|HIAP1|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF48|cIAP1|cIAP2|mcIAP1	baculoviral IAP repeat-containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-38516437-1	chr5	38516337	38516537	+	542.0	f0_c57.idr	Intergenic	Intergenic	-14285.0	NM_145559	117591.0	Mm.260137	NM_145559	ENSMUSG00000005107	Slc2a9	Glut9|SLC2A9B|SLC2a9A	solute carrier family 2 (facilitated glucose transporter), member 9	protein-coding	-2.18308165884198	-2.15547475440471	-2.16382331017202	-2.1706810624505	-2.18114370519566	-2.15366558754311	-2.03057248461154	-2.16945352807143	0.759018020146679	0.829933115115583	1
Merged-chr2-25372267-4	chr2	25372180	25372380	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001290407, exon 1 of 6)	5' UTR (NM_001290407, exon 1 of 6)	245.0	NM_001081085	72080.0	Mm.250293	NM_001081085	ENSMUSG00000026955	Sapcd2	2010317E24Rik|6030458L21Rik|AL033337|ang	suppressor APC domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-19570955-4	chr10	19570872	19571072	+	955.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	-20977.0	NM_010511	15979.0	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	3.02452348805239	1.43480775442236	2.86280804500144	2.14913044483299	2.80596306692284	2.45195095882573	1.67064496778345	2.52296253686847	-0.189991530340647	0.833841137134626	0.998431161219273
Merged-chr19-34847205-4	chr19	34847128	34847328	+	875.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114339, intron 1 of 6)	URR1A|DNA|hAT-Charlie	-26455.0	NR_029783	723826.0		NR_029783	ENSMUSG00000065594	Mir107	Mirn107|mir-107|mmu-mir-107	microRNA 107	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-92876788-4	chr7	92876708	92876908	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028243, intron 1 of 8)	intron (NM_028243, intron 1 of 8)	1555.0	NM_028243	72461.0	Mm.389969	NM_028243	ENSMUSG00000061119	Prcp	2510048K03Rik|2610104A14Rik|AI451719|HUMPCP|PCP	prolylcarboxypeptidase (angiotensinase C)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-100613829-4	chr15	100613776	100613976	+	979.116699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_045701)	TTS (NR_045701)	1234.0	NR_045701	78445.0	Mm.44383	NR_045701	ENSMUSG00000097093	C330013E15Rik	-	RIKEN cDNA C330013E15 gene	ncRNA	4.45623754261892	4.59720206822257	4.13999051311805	4.14174787263602	3.73578328240784	2.92764751584507	4.66353812669162	3.54456257254815	-0.636974542000346	0.194339064203582	0.674631641388253
Merged-chr16-19975582-2	chr16	19975482	19975682	+	610.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183390, intron 1 of 6)	intron (NM_183390, intron 1 of 6)	7467.0	NM_183390	239743.0	Mm.86699	NM_183390	ENSMUSG00000043008	Klhl6	-	kelch-like 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-54926421-4	chr1	54926327	54926527	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081433)	promoter-TSS (NM_001081433)	-40.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44378500-4	chr7	44378402	44378602	+	994.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3472.0	NM_027049	69349.0	Mm.358922	NM_027049	ENSMUSG00000008028	1700008O03Rik	-	RIKEN cDNA 1700008O03 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-75400480-2	chr1	75400380	75400580	+	592.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001173477, intron 1 of 4)	intron (NM_001173477, intron 1 of 4)	395.0	NM_001173477	11790.0	Mm.275397	NM_007463	ENSMUSG00000026207	Speg	AW125581|Apeg1|BPEG|D1Bwg1450e|SPEGalpha|SPEGbeta|mKIAA1297	SPEG complex locus	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124486955-2	chr5	124486855	124487055	+	582.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029532, intron 1 of 1)	intron (NM_029532, intron 1 of 1)	3800.0	NM_029532	76167.0	Mm.156035	NM_029532	ENSMUSG00000029402	Snrnp35	6330548G22Rik	small nuclear ribonucleoprotein 35 (U11/U12)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-77910732-4	chr9	77910657	77910857	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-6608.0	NM_134255	68801.0	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-120881233-4	chr4	120881141	120881341	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_182929, intron 3 of 7)	intron (NM_182929, intron 3 of 7)	26442.0	NM_182929	242662.0	Mm.192502	NM_182929	ENSMUSG00000032890	Rims3	A730060M23Rik|Nim3|Rim3|mKIAA0237	regulating synaptic membrane exocytosis 3	protein-coding	3.75565060922281	4.25522141938386	4.12109079835776	3.22849303325681	4.05584940406159	4.39893509269649	3.81421579541772	4.088196523879	0.295268281665812	0.525331656254091	0.948340152465298
Merged-chr6-52938089-2	chr6	52937989	52938189	+	786.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_173406, intron 1 of 4)	intron (NM_173406, intron 1 of 4)	-28469.0	NM_001168277	231986.0	Mm.386865	NM_173406	ENSMUSG00000063568	Jazf1	AI591476|C820002C15|Jaz1|Tip27	JAZF zinc finger 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-17628433-4	chr6	17628313	17628513	+	844.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8597.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-81862489-2	chr12	81862389	81862589	+	650.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_018814, intron 1 of 35)	intron (NM_018814, intron 1 of 35)	2459.0	NM_018814	54604.0	Mm.86584	NM_018814	ENSMUSG00000021140	Pcnx	2900024E21Rik|3526401J03Rik|AF096286|AI327143|AI413187|Pcnx1|Pcnxl1	pecanex homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35240138-2	chr17	35240038	35240238	+	987.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1608.0	NM_019693	53817.0	Mm.439827	NM_019693	ENSMUSG00000019432	Ddx39b	0610030D10Rik|AI428441|Bat-1|Bat1|Bat1a|D17H6S81E|D17H6S81E-1|D6S81Eh	DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-121484340-3	chr10	121484233	121484433	+	928.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-8083.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-27529451-2	chr7	27529351	27529551	+	614.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001033315, exon 3 of 4)	exon (NM_001033315, exon 3 of 4)	6190.0	NM_001033315	233020.0	Mm.429716	NM_001033315	ENSMUSG00000040424	Hipk4	Gm162	homeodomain interacting protein kinase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-18958119-4	chr7	18958007	18958207	+	999.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001029877, exon 4 of 4)	exon (NM_001029877, exon 4 of 4)	-29417.0	NM_194064	378430.0	Mm.277153	NM_194064	ENSMUSG00000051965	Nanos2	nos2	nanos C2HC-type zinc finger 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-78956595-2	chr11	78956495	78956695	+	766.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_010927, exon 25 of 27)	exon (NM_010927, exon 25 of 27)	28329.0	NM_001159301	16859.0	Mm.341434	NM_010708	ENSMUSG00000001123	Lgals9	AA407335|AI194909|AI265545|LGALS35|Lgals5|gal-9|galectin-9	lectin, galactose binding, soluble 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-72723894-3	chr8	72723800	72724000	+	907.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113248, intron 1 of 6)	CpG	630.0	NM_009188	20467.0	Mm.2137	NM_009188	ENSMUSG00000031622	Sin3b	2810430C10Rik	transcriptional regulator, SIN3B (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-113444458-1	chr11	113444358	113444558	+	618.333313	f0_balb.idr	intron (NM_027216, intron 5 of 9)	intron (NM_027216, intron 5 of 9)	121357.0	NM_001166503	69806.0	Mm.341021	NM_027216	ENSMUSG00000041654	Slc39a11	1810074D23Rik	solute carrier family 39 (metal ion transporter), member 11	protein-coding	-0.151369805848724	-0.458141329662656	-0.460836340950118	-0.462892596982304	-0.144271418074212	-0.28996055301553	-0.307593326283642	-0.462534819962279	0.940161165305193	0.704907802409022	1
Merged-chr10-77565970-4	chr10	77565869	77566069	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008404)	TTS (NM_008404)	-15686.0	NM_145925	108705.0	Mm.28853	NM_145925	ENSMUSG00000009291	Pttg1ip	1810010L20Rik|AI314311|AU018448|C79540|PBF	pituitary tumor-transforming 1 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34203166-2	chr17	34203066	34203266	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1313.0	NM_011530	21355.0	Mm.14814	NM_011530	ENSMUSG00000024339	Tap2	ABC18|AI462429|APT2|Abcb3|Ham-2|Ham2|MTP2|PSF2|RING11|Tap-2|Y1|jas	transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120350348-4	chr11	120350245	120350445	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038126, intron 1 of 1)	CpG	1667.0	NR_038126	66838.0	Mm.375010	NR_038126	ENSMUSG00000043644	0610009L18Rik	-	RIKEN cDNA 0610009L18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-136362800-1	chr3	136362700	136362900	+	567.0	f0_balb.idr	Intergenic	MIR|SINE|MIR	-36734.0	NM_001033350	242248.0	Mm.30832	NM_001033350	ENSMUSG00000037922	Bank1	A530094C12Rik|AI451642|AVIEF|BANK	B cell scaffold protein with ankyrin repeats 1	protein-coding	-0.658130454044768	-0.639839760702281	-0.645597235664537	-0.650190471699644	-0.656923186837182	-0.63857099532904	-0.644308845063395	0.435386435218202	4.42076583389585	0.0689360816276683	1
Merged-chr11-114654925-2	chr11	114654825	114655025	+	729.125	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13618.0	NM_023372	67671.0	Mm.238817	NM_023372	ENSMUSG00000057322	Rpl38	0610025G13Rik|Rbt|Ts|Tss	ribosomal protein L38	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-33931799-4	chr13	33931728	33931928	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001243192, intron 2 of 7)	intron (NM_001243192, intron 2 of 7)	-4204.0	NR_040707	68808.0	Mm.443347	NR_040707	ENSMUSG00000085457	1110046J04Rik	-	RIKEN cDNA 1110046J04 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-39983122-3	chr1	39983069	39983269	+	876.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001252201, exon 7 of 31)	exon (NM_001252201, exon 7 of 31)	82256.0	NM_008696	26921.0	Mm.491139	NM_008696	ENSMUSG00000026074	Map4k4	9430080K19Rik|AU043147|AU045934|AW046177|HGK|Nik	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-62470137-3	chr13	62470030	62470230	+	879.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-3318.0	NM_001136496	71508.0	Mm.442497	NM_178875	ENSMUSG00000113450	Zfp935	8430426H19Rik|Es113	zinc finger protein 935	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-24216677-1	chr6	24216577	24216777	+	1000.0	f1_c57bl6.idr	Intergenic	Lx2B2|LINE|L1	-48585.0	NM_019481	55961.0	Mm.19299	NM_019481	ENSMUSG00000029700	Slc13a1	AI314066|AI987826|NaSi-1|Nas1	solute carrier family 13 (sodium/sulfate symporters), member 1	protein-coding	-1.27480050717774	-0.604729833679879	-1.25573295904267	-1.26493563944758	-1.27428069156472	-1.24210192204986	-1.25319678955844	-1.26328836405502	-2.6632876257018	0.439827081912762	1
Merged-chr16-22444551-3	chr16	22444458	22444658	+	959.93335	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4988.0	NM_023794	104156.0	Mm.155708	NM_023794	ENSMUSG00000013089	Etv5	1110005E01Rik|8430401F14Rik|ERM	ets variant 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-3481846-4	chr8	3481719	3481919	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029598, intron 4 of 8)	RLTR12A|LTR|ERVK	10957.0	NM_029598	76406.0	Mm.74996	NM_029598	ENSMUSG00000040340	Tex45	1700019B03Rik	testis expressed 45	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-50978753-4	chr6	50978655	50978855	+	944.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	202640.0	NR_045984	319981.0	Mm.131454	NR_045984	ENSMUSG00000107667	C530044C16Rik	-	RIKEN cDNA C530044C16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-64118927-4	chr1	64118833	64119033	+	973.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033563, intron 1 of 3)	intron (NM_033563, intron 1 of 3)	2456.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91642879-2	chr16	91642779	91642979	+	561.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357351, intron 2 of 21)	intron (NM_001357351, intron 2 of 21)	4093.0	NM_010256	14450.0	Mm.4505	NM_010256	ENSMUSG00000022962	Gart	Gaps|Prgs	phosphoribosylglycinamide formyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-8416291-3	chr10	8416205	8416405	+	861.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177387, intron 1 of 7)	intron (NM_177387, intron 1 of 7)	102520.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-57744719-2	chr14	57744619	57744819	+	807.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_015771, intron 1 of 7)	intron (NM_015771, intron 1 of 7)	1404.0	NM_015771	50523.0	Mm.347899	NM_015771	ENSMUSG00000021959	Lats2	4932411G09Rik|AV277261|AW228608	large tumor suppressor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-9388101-4	chr13	9387901	9388101	+	968.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081426, intron 1 of 36)	intron (NM_001081426, intron 1 of 36)	111476.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-145957568-1	chr2	145957468	145957668	+	721.666687	f1_c57bl6.idr	intron (NM_175280, intron 6 of 6)	intron (NM_175280, intron 6 of 6)	22784.0	NM_175280	78774.0	Mm.136347	NM_175280	ENSMUSG00000037143	Cfap61	4930529M08Rik|BB178539|BC024760	cilia and flagella associated protein 61	protein-coding	1.83534123142208	2.92023430670421	2.37591064656447	2.50479226878499	2.21042283509629	1.88057213714816	1.99597925345732	1.93757294688611	-1.08568483074469	0.210746398619849	0.700295963065255
Merged-chr13-103807558-3	chr13	103807433	103807633	+	787.972229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR49|LTR|ERVK	-32925.0	NM_001361085	218543.0	Mm.458176	NM_172592	ENSMUSG00000032621	Srek1	8430401B01|AI450757|AI462342|SRrp508|SRrp86|Sfrs12|Srsf12	splicing regulatory glutamine/lysine-rich protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-125478729-2	chr7	125478597	125478797	+	793.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360659, intron 2 of 7)	intron (NM_001360659, intron 2 of 7)	12845.0	NM_001360659	67711.0	Mm.4467	NM_026330	ENSMUSG00000030750	Nsmce1	2510027N19Rik	NSE1 homolog, SMC5-SMC6 complex component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-81578945-2	chr17	81578845	81579045	+	560.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 2 of 8)	intron (NR_104580, intron 2 of 8)	159442.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-41245298-4	chr8	41245203	41245403	+	922.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023662, intron 1 of 37)	RMER6B|LTR|ERVK	5544.0	NM_023662	18536.0	Mm.117896	NM_023662	ENSMUSG00000031592	Pcm1	2600002H09Rik|9430077F19Rik|C030044G17Rik	pericentriolar material 1	protein-coding	1.39282297791969	0.673384286115756	0.660389327034657	1.81030569729094	1.31442362556485	1.09859769055704	0.663276098026602	0.853049050341867	-0.927159848690928	0.542024707206455	0.954866069207078
Merged-chr5-72551410-4	chr5	72551307	72551507	+	978.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153351, intron 4 of 21)	intron (NR_153351, intron 4 of 21)	8238.0	NM_001359837	100978.0	Mm.187453	NM_133921	ENSMUSG00000072889	Nfxl1	1700012H24Rik|AW538212|D430033A06Rik|DNABF|GCF|Gm1058|TCF9	nuclear transcription factor, X-box binding-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-8729075-4	chr3	8728924	8729124	+	978.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61986.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101103567-2	chr15	101103467	101103667	+	553.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12188.0	NM_144790	208258.0	Mm.152952	NM_144790	ENSMUSG00000047034	Ankrd33	A930021G21Rik|Panky|Panky-a	ankyrin repeat domain 33	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-68954068-4	chr8	68953969	68954169	+	967.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	73514.0	NM_008509	16956.0	Mm.1514	NM_008509	ENSMUSG00000015568	Lpl	-	lipoprotein lipase	protein-coding	2.70824474770622	2.01337045396448	2.84832416280642	2.35425480605617	2.73051079592555	1.52482468497639	2.8703912000052	2.94477449594783	0.224791516829983	0.7873477024617	0.998431161219273
Merged-chr19-6856113-2	chr19	6856013	6856213	+	643.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081291, exon 7 of 27)	exon (NM_001081291, exon 7 of 27)	2098.0	NM_001081291	78317.0	Mm.329596	NM_198008	ENSMUSG00000047810	Ccdc88b	2610041P08Rik|Ccdc88	coiled-coil domain containing 88B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-63925481-4	chr11	63925379	63925579	+	961.991699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-3195.0	NM_018805	54710.0	Mm.274426	NM_018805	ENSMUSG00000070407	Hs3st3b1	3-OST-3B|3OST3B1|3Ost3b|AU041882|AW536289|Hs3st3b|m3-OST-3B	heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	protein-coding	2.83393919103392	2.48516736927404	1.70755542687373	2.83362276849877	3.15486097137742	1.77392369423997	2.12143331498057	2.76390210074856	0.0723896158264346	0.932292795258152	0.998431161219273
Merged-chr16-17125161-4	chr16	17125007	17125207	+	939.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358255)	promoter-TSS (NM_001358255)	95.0	NM_183287	70458.0	Mm.234165	NM_183287	ENSMUSG00000049916	2610318N02Rik	AL033325	RIKEN cDNA 2610318N02 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-80261412-2	chr12	80261312	80261512	+	628.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1031.0	NM_001346669	109711.0	Mm.253564	NM_134156	ENSMUSG00000015143	Actn1	3110023F10Rik|Actn1a	actinin, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-26506994-4	chr19	26506906	26507106	+	894.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-98154.0	NM_011416	67155.0	Mm.491146	NM_011416	ENSMUSG00000024921	Smarca2	2610209L14Rik|SNF2alpha|Snf2l2|brahma|brm	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-22773678-4	chr2	22773556	22773756	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019456)	promoter-TSS (NM_019456)	-671.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-93834233-2	chr16	93834133	93834333	+	948.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001045529, intron 1 of 16)	intron (NM_001045529, intron 1 of 16)	2112.0	NM_001045529	338467.0	Mm.287329	NM_001045529	ENSMUSG00000039456	Morc3	1110051N18Rik|AI452146|BF318192|D16Jhu32e|NXP2|Zcwcc3	microrchidia 3	protein-coding	1.76086067623942	0.998324499370686	1.20764337283873	2.04851062343644	2.09886795161763	1.00268004139637	1.21568735283102	1.97219562185603	0.25909794422868	0.836236815612093	0.998431161219273
Merged-chr13-119409310-8	chr13	119409149	119409349	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008710)	promoter-TSS (NM_008710)	8.0	NM_001308506	18115.0	Mm.132584	NM_008710	ENSMUSG00000116207	Nnt	4930423F13Rik|AI323702|BB168308	nicotinamide nucleotide transhydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116198337-1	chr11	116198237	116198437	+	663.5	f0_balb.idr	promoter-TSS (NM_027107)	promoter-TSS (NM_027107)	-518.0	NM_027107	69535.0	Mm.390347	NM_027107	ENSMUSG00000020778	Ten1	2310004N24Rik	TEN1 telomerase capping complex subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-52734368-3	chr1	52734262	52734462	+	984.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A1|LTR|ERVL-MaLR	-7004.0	NM_001357464	98682.0	Mm.491173	NM_133829	ENSMUSG00000041439	Mfsd6	2210010L05Rik|9630025I22Rik|AI836200|AW212394|MMR2	major facilitator superfamily domain containing 6	protein-coding	-0.276941530323823	0.472866689988269	-0.267159550141934	0.164307422855956	-0.276032354251421	-0.0592781697585515	-0.266109753839103	-0.270191810254061	-2.83159590074369	0.239763877298403	1
Merged-chr2-72842037-4	chr2	72841924	72842124	+	901.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28307.0	NR_102349	76218.0	Mm.75260	NR_102348	ENSMUSG00000085427	6430710C18Rik	5033406J01Rik	RIKEN cDNA 6430710C18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72410788-2	chr6	72410688	72410888	+	874.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3520.0	NM_019802	56316.0	Mm.19937	NM_019802	ENSMUSG00000053460	Ggcx	-	gamma-glutamyl carboxylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-10326193-2	chr17	10326093	10326293	+	598.474976	f1_balb.idr|f1_c57bl6.idr	intron (NR_045461, intron 2 of 2)	intron (NR_045461, intron 2 of 2)	1591.0	NR_045461	76634.0	Mm.491052	NR_045461	ENSMUSG00000099384	1700110C19Rik	-	RIKEN cDNA 1700110C19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-69576517-4	chr18	69576412	69576612	+	975.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 8 of 19)	intron (NM_001361128, intron 8 of 19)	230352.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-47628757-4	chr9	47628655	47628855	+	859.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	98403.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	2.04480439759811	1.92110286960709	1.00529296676468	1.79385805330914	1.81071918069052	1.03043423112339	2.07827352821156	0.991847989248872	-0.50985309100773	0.689455212580419	0.996533206832645
Merged-chr3-67573093-2	chr3	67572993	67573193	+	951.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9675.0	NM_025813	66868.0	Mm.491153	NM_025813	ENSMUSG00000027775	Mfsd1	1200003O06Rik	major facilitator superfamily domain containing 1	protein-coding	-1.36231112212493	-1.47769094372272	-1.4871733201065	-1.49496242639791	-1.50684600473694	-1.47563607320368	-1.48502671794098	-1.19516604007473	0.779810888222414	0.824858146891838	1
Merged-chr12-79171746-4	chr12	79171657	79171857	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016800, intron 1 of 5)	intron (NM_016800, intron 1 of 5)	701.0	NM_016800	53612.0	Mm.265929	NM_016800	ENSMUSG00000021124	Vti1b	AU015348|GES30|MVti1b|SNARE|Vti1-rp1	vesicle transport through interaction with t-SNAREs 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101196548-2	chr15	101196448	101196648	+	723.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_007395, intron 3 of 8)	intron (NM_007395, intron 3 of 8)	2679.0	NR_105927	102466774.0		NR_105927	ENSMUSG00000106563	Mir6962	mmu-mir-6962	microRNA 6962	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-155065450-4	chr1	155065323	155065523	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151545, intron 4 of 6)	L2b|LINE|L2	17841.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-44281926-2	chr19	44281826	44282026	+	779.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	-11750.0	NM_009128	20250.0	Mm.487021	NM_009128	ENSMUSG00000025203	Scd2	Mir5114|Scd-2|mir-5114|swty	stearoyl-Coenzyme A desaturase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-114826404-4	chr5	114826298	114826498	+	902.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2930.0	NM_181075	330173.0	Mm.482205	NM_181075	ENSMUSG00000092486	2610524H06Rik	-	RIKEN cDNA 2610524H06 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-4225354-4	chr7	4225252	4225452	+	751.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2B2|LINE|L1	-12402.0	NM_001081239	232801.0	Mm.258061	NM_001081239	ENSMUSG00000070873	Lilra5	E030017K20|EG232801|Gm4878|Lilrc1	leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 5	protein-coding	2.04818217945364	2.29553810498292	1.77387340255975	1.89105042311612	1.6621395942071	2.17667532626931	2.79878093732583	2.47462335771606	0.815811203220011	0.363565396673725	0.858903333095609
Merged-chr7-98311582-3	chr7	98311502	98311702	+	668.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360615, intron 1 of 10)	B4|SINE|B4	-2060.0	NM_025408	66190.0	Mm.334041	NM_025408	ENSMUSG00000030760	Acer3	1110057L18Rik|5430429L08Rik|AV015045|Phca|aPHC	alkaline ceramidase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125573396-4	chr6	125573290	125573490	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011708, intron 6 of 51)	intron (NM_011708, intron 6 of 51)	20442.0	NM_011708	22371.0	Mm.22339	NM_011708	ENSMUSG00000001930	Vwf	6820430P06Rik|AI551257|B130011O06Rik|C630030D09|F8VWF|VWD	Von Willebrand factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-32768233-4	chr4	32768109	32768309	+	904.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081392, intron 96 of 101)	(TG)n|Simple_repeat|Simple_repeat	-32050.0	NM_175364	108755.0	Mm.1182	NM_175364	ENSMUSG00000045854	Lyrm2	2610208E05Rik	LYR motif containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-76224140-6	chr16	76224001	76224201	+	981.2777710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	101488.0	NR_040575	78215.0	Mm.243885	NR_040575		4930578N18Rik	-	RIKEN cDNA 4930578N18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-75590347-4	chr2	75590241	75590441	+	964.008301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68918.0	NM_146130	229279.0	Mm.316306	NM_053263	ENSMUSG00000059005	Hnrnpa3	2410013L13Rik|2610209F03Rik|2610510D13Rik|Hnrpa3	heterogeneous nuclear ribonucleoprotein A3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-50834675-3	chr14	50834566	50834766	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009351, intron 41 of 54)	RLTR12B|LTR|ERVK	26750.0	NM_009632	11546.0	Mm.281482	NM_009632	ENSMUSG00000036023	Parp2	ADPRT-2|ARTD2|Adprt2|Adprtl2|Aspartl2|C78626|PARP-2|mPARP-2|pADPRT-2	poly (ADP-ribose) polymerase family, member 2	protein-coding	2.23934245421915	2.71091310056543	2.43222431935532	2.54308230936157	1.63905987371247	1.3372235355264	2.34459123728368	1.71572706192208	-1.66976978103195	0.0720455289669963	0.404414012675278
Merged-chr6-38353431-2	chr6	38353331	38353531	+	992.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_028864, intron 1 of 8)	intron (NM_028864, intron 1 of 8)	1172.0	NM_001347122	78781.0	Mm.25243	NM_028421	ENSMUSG00000029826	Zc3hav1	1200014N16Rik|2900058M19Rik|9130009D18Rik|9830115L13Rik|ARTD13|D6Bwg1452e|ZAP	zinc finger CCCH type, antiviral 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-31809403-2	chr2	31809303	31809503	+	605.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_183424, intron 1 of 1)	intron (NM_183424, intron 1 of 1)	1177.0	NM_183424	227717.0	Mm.185027	NM_183424	ENSMUSG00000043102	Qrfp	P518	pyroglutamylated RFamide peptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-110351716-4	chr4	110351605	110351805	+	899.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163397, intron 1 of 5)	CpG	206.0	NM_001163397	15572.0	Mm.3970	NM_010488	ENSMUSG00000028546	Elavl4	Elav|Hud|PNEM	ELAV like RNA binding protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-68865969-4	chr11	68865873	68866073	+	898.19165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12842.0	NM_023668	83431.0	Mm.31979	NM_023668	ENSMUSG00000018736	Ndel1	2600006O07Rik|MITAP1|NUDEL|mNudel	nudE neurodevelopment protein 1 like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47715371-4	chr17	47715529	47715729	+	822.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11213.0	NM_025973	109820.0	Mm.22957	NM_025973	ENSMUSG00000023987	Pgc	2210410L06Rik|Upg-1|Upg1	progastricsin (pepsinogen C)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32077202-2	chr2	32077102	32077302	+	568.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_151493, intron 2 of 5)	intron (NR_151493, intron 2 of 5)	6503.0	NM_175511	241303.0	Mm.250441	NM_175511	ENSMUSG00000050592	Fam78a	A130092J06Rik	family with sequence similarity 78, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-30183922-4	chr11	30183769	30183969	+	808.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175836, intron 1 of 34)	intron (NM_175836, intron 1 of 34)	14388.0	NM_009260	20742.0	Mm.123110	NM_009260	ENSMUSG00000020315	Sptbn1	9930031C03Rik|AL033301|SPTB2|Spnb-2|Spnb2|elf1|elf3|mKIAA4049	spectrin beta, non-erythrocytic 1	protein-coding	0.193520861526813	-0.0681736489274402	0.398548520330374	-0.267719276412733	-0.272529225112617	-0.258893672773739	-0.263337293643695	-0.267124238234217	-3.69301256163051	0.120775107678555	1
Merged-chr10-128058473-2	chr10	128058373	128058573	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019766)	promoter-TSS (NM_019766)	-509.0	NM_019766	56351.0	Mm.305816	NM_019766	ENSMUSG00000071072	Ptges3	5730442A20Rik|Ptges|Tebp|cPGES|p23|sid3177	prostaglandin E synthase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-65959726-2	chr5	65959626	65959826	+	850.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-7398.0	NM_001081104	231252.0	Mm.140015	NM_001081104	ENSMUSG00000029205	Chrna9	2410015I05Rik|Acra9|EG666827|Gm8311	cholinergic receptor, nicotinic, alpha polypeptide 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-33900978-3	chr17	33900947	33901147	+	762.25	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-4088.0	NR_040470	474160.0	Mm.206186	NR_040470	ENSMUSG00000092349	Platr17	-	pluripotency associated transcript 17	ncRNA	2.097113870036	2.52158239291506	3.40518571248906	3.10208382379311	2.51424312838322	3.14472402414134	2.84142575953356	2.95029095140041	-0.00909742698180037	0.989808220923148	0.998431161219273
Merged-chr5-113830463-4	chr5	113830365	113830565	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009151)	promoter-TSS (NM_009151)	36.0	NM_009151	20345.0	Mm.332590	NM_009151	ENSMUSG00000048163	Selplg	CD162|Psgl-1|Psgl1|Selp1|Selpl	selectin, platelet (p-selectin) ligand	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-116712268-4	chr6	116712162	116712362	+	847.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178768, intron 1 of 4)	intron (NM_178768, intron 1 of 4)	4496.0	NM_178768	319776.0	Mm.133120	NM_178768	ENSMUSG00000048108	Tmem72	C230095G01Rik	transmembrane protein 72	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-93755992-2	chr1	93755892	93756092	+	632.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_174874, intron 1 of 12)	intron (NM_174874, intron 1 of 12)	959.0	NM_174874	66615.0	Mm.29087	NM_174874	ENSMUSG00000026280	Atg4b	2510009N07Rik|AW048066|Apg4b|Atg4bl|Autl1	autophagy related 4B, cysteine peptidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-9919782-2	chr19	9919682	9919882	+	678.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE-int|LTR|ERVL-MaLR	-20249.0	NM_016692	16319.0	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-45464399-4	chr9	45464293	45464493	+	957.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081270, intron 3 of 32)	intron (NM_001081270, intron 3 of 32)	-33161.0	NR_040732	74602.0	Mm.394117	NR_040732	ENSMUSG00000097074	4833428L15Rik	-	RIKEN cDNA 4833428L15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-25101231-4	chr12	25101134	25101334	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5142.0	NM_010496	15902.0	Mm.34871	NM_010496	ENSMUSG00000020644	Id2	AI255428|C78922|Idb2|bHLHb26	inhibitor of DNA binding 2	protein-coding	5.11525131494388	5.63460577498027	4.92414983523249	3.85025283516314	5.49734219789668	5.52753815180754	4.4204538505969	4.73769478308193	0.134299729529234	0.742619690456067	0.998431161219273
Merged-chr6-86470765-2	chr6	86470665	86470865	+	870.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_146170)	TTS (NM_146170)	10065.0	NR_131125	320486.0	Mm.391625	NR_131125	ENSMUSG00000085589	A430078I02Rik	T25621	RIKEN cDNA A430078I02 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-26812133-2	chr18	26812033	26812233	+	733.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-1057976.0	NM_001362334	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44970321-4	chr7	44970203	44970403	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357670, intron 6 of 18)	intron (NM_001357670, intron 6 of 18)	4548.0	NM_001357670	78070.0	Mm.231465	NM_153679	ENSMUSG00000007783	Cpt1c	6530437J22Rik|9630004I06Rik|CPT I-C|CPT IC|CPT1-B|CPTI-B	carnitine palmitoyltransferase 1c	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-39203586-2	chr2	39203486	39203686	+	655.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_024209, intron 4 of 6)	intron (NM_024209, intron 4 of 6)	-12856.0	NM_178778	320271.0	Mm.204836	NM_178778	ENSMUSG00000035236	Scai	9330112M16|A930041I02Rik|AI662729	suppressor of cancer cell invasion	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100725091-4	chr11	100724998	100725198	+	943.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305003, intron 1 of 5)	intron (NM_001305003, intron 1 of 5)	11248.0	NM_029307	75482.0	Mm.46175	NM_029307	ENSMUSG00000017832	Hspb9	1700007H20Rik	heat shock protein, alpha-crystallin-related, B9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-142989197-2	chr2	142989097	142989297	+	585.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73872.0	NM_021335	20639.0	Mm.1323	NM_021335	ENSMUSG00000008333	Snrpb2	2810052G09Rik	U2 small nuclear ribonucleoprotein B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-58506153-4	chr4	58506044	58506244	+	845.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010336, intron 1 of 3)	PB1D11|SINE|Alu	-6741.0	NM_001290486	14745.0	Mm.4772	NM_010336	ENSMUSG00000038668	Lpar1	AI326300|Edg2|Gpcr26|Kdt2|lpA1|vzg-1	lysophosphatidic acid receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-174344312-4	chr2	174344241	174344441	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077507, intron 5 of 10)	intron (NM_001077507, intron 5 of 10)	14252.0	NM_001077510	14683.0	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53410902-4	chr4	53410803	53411003	+	869.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29510.0	NM_001159633	100434.0	Mm.482207	NM_133891	ENSMUSG00000028412	Slc44a1	2210409B22Rik|4833416H08Rik|AW547365|CHTL1|CTL1|Cdw92	solute carrier family 44, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-22129745-4	chr9	22129633	22129833	+	827.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001102404, intron 2 of 4)	intron (NM_001102404, intron 2 of 4)	865.0	NM_007388	11433.0	Mm.46354	NM_007388	ENSMUSG00000001348	Acp5	TRACP|TRAP	acid phosphatase 5, tartrate resistant	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-106936817-3	chr8	106936658	106936858	+	820.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009229, intron 1 of 6)	intron (NM_009229, intron 1 of 6)	1008.0	NM_009229	20650.0	Mm.30228	NM_009229	ENSMUSG00000041308	Sntb2	Snt2	syntrophin, basic 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-117515967-2	chr5	117515867	117516067	+	575.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001312914, intron 3 of 19)	MTC|LTR|ERVL-MaLR	101965.0	NM_001312914	333050.0	Mm.437947	NM_001034873	ENSMUSG00000061578	Ksr2	-	kinase suppressor of ras 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-118703233-4	chr7	118703120	118703320	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019580, intron 1 of 5)	intron (NM_019580, intron 1 of 5)	2518.0	NM_019580	56209.0	Mm.273142	NM_019580	ENSMUSG00000033917	Gde1	1200003M13Rik|Mir16|RGS16	glycerophosphodiester phosphodiesterase 1	protein-coding	7.70607389331338	8.37063463671981	8.03229204867828	7.85980403049693	7.6645675446583	7.21923695927288	7.14074907294768	7.74915349457277	-0.555516638319362	0.00178389725696776	0.0306636092967036
Merged-chr2-27009998-4	chr2	27009919	27010119	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029862)	promoter-TSS (NM_029862)	93.0	NM_001243239	381356.0	Mm.150270	NM_029862	ENSMUSG00000015488	Cacfd1	5930434B04Rik|mFwe	calcium channel flower domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-168625252-3	chr2	168625158	168625358	+	934.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15501.0	NR_105971	102466784.0		NR_105971	ENSMUSG00000105496	Mir7004	mmu-mir-7004	microRNA 7004	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-18965550-2	chr10	18965450	18965650	+	602.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46413.0	NM_001166402	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102434118-2	chr12	102434018	102434218	+	962.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011175, intron 1 of 13)	intron (NM_011175, intron 1 of 13)	5695.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	1.35752201625195	0.625887465767826	0.607286491791934	1.84794650373208	0.788937930345469	0.629992122774719	0.611445872607877	2.20727017303096	0.194193488733928	0.901627364977697	0.998431161219273
Merged-chr3-63919792-2	chr3	63919692	63919892	+	633.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177856, intron 4 of 4)	intron (NM_177856, intron 4 of 4)	9006.0	NM_001357824	329659.0	Mm.39342	NM_177856	ENSMUSG00000048581	E130311K13Rik	-	RIKEN cDNA E130311K13 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-31062721-2	chr6	31062621	31062821	+	561.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029744)	promoter-TSS (NR_029744)	26.0	NR_029744	387222.0		NR_029744	ENSMUSG00000065610	Mir29a	Mirn29a|mir-29a|mmu-mir-29a	microRNA 29a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-57954668-4	chr4	57954568	57954768	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011660, intron 1 of 4)	intron (NM_011660, intron 1 of 4)	1743.0	NM_011660	22166.0	Mm.260618	NM_011660	ENSMUSG00000028367	Txn1	ADF|AW550880|Trx1|Txn	thioredoxin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-68049791-4	chr5	68049683	68049883	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001018019, intron 1 of 3)	intron (NM_001018019, intron 1 of 3)	17948.0	NM_001018019	433899.0	Mm.332422	NM_001018019	ENSMUSG00000068082	Grxcr1	Tg(Eno2-Gabrb3)0370Brll|pi|tde	glutaredoxin, cysteine rich 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-48853833-7	chr11	48853680	48853880	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16309.0	NM_001347446	94089.0	Mm.390335	NM_053166	ENSMUSG00000040350	Trim7	AI790312	tripartite motif-containing 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-69132191-3	chr12	69132110	69132310	+	688.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A1|LTR|ERVL-MaLR	26976.0	NM_009093	20090.0	Mm.379006	NM_009093	ENSMUSG00000034892	Rps29	-	ribosomal protein S29	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-114806714-2	chr5	114806614	114806814	+	810.166626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_026718)	TTS (NM_026718)	7262.0	NR_027818	66236.0	Mm.268546	NR_027817	ENSMUSG00000072694	1500011B03Rik	AI415201|AV141149|AW556386	RIKEN cDNA 1500011B03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69914073-4	chr11	69913994	69914194	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357906)	promoter-TSS (NM_001357906)	60.0	NM_019726	56310.0	Mm.477738	NM_019726	ENSMUSG00000023170	Gps2	AI505953|GPS-2	G protein pathway suppressor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-67769843-4	chr18	67769737	67769937	+	935.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	A-rich|Low_complexity|Low_complexity	-5039.0	NM_001360934	72124.0	Mm.307315	NM_028112	ENSMUSG00000079614	Seh1l	2610007A16Rik|AW540070|SEC13L|SEH1A|SEH1B|Seh1	SEH1-like (S. cerevisiae	protein-coding	3.20240114309574	3.97275693146735	3.39507936993457	2.58141263220306	1.96933139275863	3.82291431942105	2.82098043309607	2.72885246302038	-0.608751778427086	0.386905014461938	0.876517644221684
Merged-chr6-83034666-2	chr6	83034559	83034759	+	744.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_013586, intron 1 of 13)	intron (NM_013586, intron 1 of 13)	435.0	NM_013586	16950.0	Mm.380433	NM_013586	ENSMUSG00000000693	Loxl3	Lor2|Loxl2	lysyl oxidase-like 3	protein-coding	1.03337208893632	0.0889171164736391	0.0820846342223961	0.0767829610807246	0.587589162549896	0.476933680758837	0.0835953189874633	0.0777111067347006	-0.491159458218332	0.819086595927703	1
Merged-chr10-24591309-2	chr10	24591209	24591409	+	748.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4133.0	NM_010217	14219.0	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-120793295-3	chr5	120793222	120793422	+	662.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347450, intron 2 of 5)	intron (NM_001347450, intron 2 of 5)	2208.0	NM_001347450	231699.0	Mm.379383	NM_145210	ENSMUSG00000066867	Oas1e	C87484|oasl7	2'-5' oligoadenylate synthetase 1E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117467643-2	chr8	117467543	117467743	+	621.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	8378.0	NR_106046	102465653.0		NR_106046	ENSMUSG00000098483	Mir7078	Gm27386|mmu-mir-7078	microRNA 7078	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-115362364-4	chr10	115362258	115362458	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359470)	promoter-TSS (NM_001359470)	-91.0	NM_001359471	67226.0	Mm.29647	NM_133683	ENSMUSG00000069520	Tmem19	2810428F02Rik|AW125171	transmembrane protein 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120716213-4	chr8	120716113	120716313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20145.0	NM_008320	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-108128740-2	chr11	108128640	108128840	+	556.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011101, intron 3 of 16)	intron (NM_011101, intron 3 of 16)	131892.0	NR_106082	102465705.0		NR_106082	ENSMUSG00000098989	Mir7223	Gm28009|mmu-mir-7223	microRNA 7223	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-32501043-4	chr9	32500929	32501129	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008026, intron 1 of 8)	intron (NM_008026, intron 1 of 8)	40423.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-106322700-4	chr9	106322676	106322876	+	806.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027354, intron 9 of 10)	intron (NM_027354, intron 9 of 10)	41715.0	NM_027354	70235.0	Mm.23054	NM_027354	ENSMUSG00000023345	Poc1a	2510040D07Rik|Wdr51a|cha	POC1 centriolar protein A	protein-coding	2.1544807912729	1.77224411130371	1.70891421732259	1.65840889935231	1.96162566056642	1.03119880421568	1.01212866332625	1.2087421376703	-1.44584023267411	0.232449449387421	0.72767311543319
Merged-chr19-5448771-2	chr19	5448671	5448871	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010235, intron 1 of 3)	CpG	1073.0	NM_010235	14283.0	Mm.6215	NM_010235	ENSMUSG00000024912	Fosl1	AW538199|Fra1|fra-1	fos-like antigen 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-43665127-4	chr7	43665022	43665222	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-4961.0	NM_031181	83382.0	Mm.157702	NM_031181	ENSMUSG00000030474	Siglece	Cd170|Siglec12|Siglec5|Siglec9|Siglecl1|mSiglec-E	sialic acid binding Ig-like lectin E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-40472807-2	chr12	40472707	40472907	+	763.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	ORR1B2|LTR|ERVL-MaLR	26754.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-20966304-4	chr10	20966199	20966399	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358561, intron 6 of 22)	intron (NM_001358561, intron 6 of 22)	13752.0	NM_001358561	52906.0	Mm.253280	NM_026203	ENSMUSG00000019986	Ahi1	1700015F03Rik|Ahi-1|D10Bwg0629e	Abelson helper integration site 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-125719216-2	chr8	125719116	125719316	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14987.0	NM_025636	66566.0	Mm.25296	NM_025636	ENSMUSG00000031851	Ntpcr	2310079N02Rik|AI449709	nucleoside-triphosphatase, cancer-related	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-29370730-3	chr19	29370634	29370834	+	773.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021893, intron 1 of 6)	B2_Mm2|SINE|B2	3296.0	NM_021893	60533.0	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64209411-2	chr5	64209311	64209511	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019636, intron 2 of 19)	intron (NM_019636, intron 2 of 19)	-20946.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-75789579-2	chr14	75789479	75789679	+	544.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2542.0	NM_026232	67554.0	Mm.46067	NM_026232	ENSMUSG00000022003	Slc25a30	4933433D23Rik|AV025504|AV221431|AW319655|KMCP1	solute carrier family 25, member 30	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-60304324-2	chr14	60304224	60304424	+	632.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	39119.0	NM_144843	219135.0	Mm.247007	NM_144843	ENSMUSG00000021987	Mtmr6	4022440C11Rik|AI428804|AU041072	myotubularin related protein 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27714375-4	chr2	27714289	27714489	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290482, intron 1 of 9)	intron (NM_001290482, intron 1 of 9)	3806.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-113477389-2	chr6	113477289	113477489	+	895.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_178942, intron 9 of 17)	intron (NM_178942, intron 9 of 17)	5934.0	NM_134159	171095.0	Mm.213397	NM_134159	ENSMUSG00000030281	Il17rc	1110025H02Rik|Gm19850|IL-17RC|IL17-RC|IL17-RL|Il17rl	interleukin 17 receptor C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127937068-6	chr10	127936962	127937162	+	870.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	HAL1|LINE|L1	38527.0	NM_027301	70061.0	Mm.158320	NM_027301	ENSMUSG00000040127	Sdr9c7	1810054F20Rik|Rdh20|Rdhs|SDR-O|Sdro	4short chain dehydrogenase/reductase family 9C, member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-22021054-3	chr13	22020958	22021158	+	782.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11317.0	NM_019429	54373.0	Mm.32043	NM_019429	ENSMUSG00000006179	Prss16	AI448615|TSSP	protease, serine 16 (thymus)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-130695054-2	chr3	130694954	130695154	+	821.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_025509)	TTS (NM_025509)	14390.0	NM_025509	66357.0	Mm.300697	NM_025509	ENSMUSG00000041084	Ostc	2310008M10Rik|5730557H03Rik	oligosaccharyltransferase complex subunit (non-catalytic)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-43201370-2	chr12	43201270	43201470	+	592.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3_Mus|LINE|L1	-167153.0	NR_148724	102636207.0		NR_148724		Gm33340	Gm40882	predicted gene, 33340	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-69365255-2	chr17	69365155	69365355	+	570.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-17920.0	NM_001356283	22666.0	Mm.29434	NM_009547	ENSMUSG00000049672	Zbtb14	ZF5|Zfp161|b2b1982Clo	zinc finger and BTB domain containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-129544393-3	chr6	129544288	129544488	+	779.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11104.0	NR_045270	100504641.0	Mm.398286	NR_045270	ENSMUSG00000097675	1700101I11Rik	-	RIKEN cDNA 1700101I11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-36207088-2	chr17	36206988	36207188	+	637.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F2|LTR|ERVL-MaLR	-16937.0	NM_008208	15043.0	Mm.426002	NM_008208	ENSMUSG00000054128	H2-T3	H-2T3|H2-Tw3|MumuTL|TL	histocompatibility 2, T region locus 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-14344653-2	chr14	14344553	14344753	+	715.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTA_Mm-int|LTR|ERVL-MaLR	-1842.0	NM_008369	16188.0	Mm.425857	NM_008369	ENSMUSG00000068758	Il3ra	CD123|CDw123|SUT-1	interleukin 3 receptor, alpha chain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-83549893-2	chr9	83549793	83549993	+	633.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172507, intron 1 of 3)	intron (NM_172507, intron 1 of 3)	1555.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-9929873-1	chr19	9929773	9929973	+	838.0	f1_c57bl6.idr	Intergenic	Intergenic	-30340.0	NM_016692	16319.0	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-37561061-4	chr13	37560969	37561169	+	916.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	215724.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	0.120361952104633	0.034572602012298	0.115176513608523	-0.274136374842591	-0.277403668894238	-0.268034983947087	-0.271124103113883	-0.273729322772136	-3.54782149642572	0.144907077520203	1
Merged-chr9-80162818-2	chr9	80162718	80162918	+	668.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-2216.0	NM_001039546	17920.0	Mm.4040	NM_008662	ENSMUSG00000033577	Myo6	BC029719|Tlc|sv	myosin VI	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-38964162-2	chr6	38964062	38964262	+	807.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 3 of 12)	L1MB4|LINE|L1	45176.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-120866242-4	chr6	120866133	120866333	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153516, intron 4 of 6)	intron (NM_153516, intron 4 of 6)	30003.0	NM_153516	94044.0	Mm.27990	NM_153516	ENSMUSG00000009112	Bcl2l13	BCL-RAMBO|E430016C20Rik|Mil-1|Mil1	BCL2-like 13 (apoptosis facilitator)	protein-coding	2.114940856646	2.63824863402604	2.54985650803818	2.93386913433218	2.94531995031232	1.53400480206001	2.56972922468769	2.78738221944735	-0.0358938937797601	0.965248230877925	0.998431161219273
Merged-chr2-167005060-4	chr2	167004972	167005172	+	996.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-8773.0	NM_001109905	20853.0	Mm.73276	NM_011490	ENSMUSG00000039536	Stau1	5830401L18Rik|AW549911|C85792|Stau	staufen double-stranded RNA binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-147186208-2	chr5	147186108	147186308	+	652.916687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2488.0	NM_008178	14842.0	Mm.4797	NM_008178	ENSMUSG00000053129	Gsx1	Gsh-1|Gsh1	GS homeobox 1	protein-coding	0.308456639109499	0.17033739037144	1.16856904574821	0.156481196829417	0.147833416451769	0.722698495188943	0.164269481255166	0.501030778140524	-0.738130773777315	0.705123009064276	1
Merged-chr4-119539567-4	chr4	119539469	119539669	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172699)	promoter-TSS (NM_172699)	-92.0	NM_001290696	230700.0	Mm.259227	NM_172699	ENSMUSG00000032998	Foxj3	C330039G02Rik|Fhd6	forkhead box J3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-84887844-3	chr2	84887788	84887988	+	736.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1196.0	NM_199223	269295.0	Mm.86447	NM_199223	ENSMUSG00000050896	Rtn4rl2	Ngr2|Ngrh1|Ngrl3	reticulon 4 receptor-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-40811764-2	chr10	40811664	40811864	+	941.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_177793)	TTS (NM_177793)	71379.0	NM_027879	71713.0	Mm.46063	NM_027879	ENSMUSG00000038446	Cdc40	1200003H23Rik|EHB3|PRP17	cell division cycle 40	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-146221443-2	chr2	146221343	146221543	+	985.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016889)	promoter-TSS (NM_016889)	-554.0	NM_016889	53626.0	Mm.379070	NM_016889	ENSMUSG00000068154	Insm1	IA-1	insulinoma-associated 1	protein-coding	-2.18292257394068	-2.15545247547656	-2.03304972317742	-2.17058342868585	-2.18099422382073	-2.1536522739386	-2.16187909550322	-2.16936197735154	-0.683654500252594	0.846597994014493	1
Merged-chr5-121384078-4	chr5	121383963	121384163	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001163470, exon 2 of 12)	exon (NM_001163470, exon 2 of 12)	1346.0	NM_001359947	231712.0	Mm.20488	NM_172275	ENSMUSG00000042726	Trafd1	1110008K06Rik|Fln29	TRAF type zinc finger domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-128391470-5	chr7	128391411	128391611	+	911.716675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026418, intron 3 of 4)	intron (NM_026418, intron 3 of 4)	26661.0	NM_026418	67865.0	Mm.18635	NM_026418	ENSMUSG00000030844	Rgs10	2310010N19Rik	regulator of G-protein signalling 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-121314983-4	chr9	121314876	121315076	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152160, intron 1 of 17)	intron (NR_152160, intron 1 of 17)	17474.0	NR_152160	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-110478798-4	chr9	110478694	110478894	+	912.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163569, intron 1 of 20)	intron (NM_001163569, intron 1 of 20)	1800.0	NM_001163569	16578.0	Mm.42170	NM_010628	ENSMUSG00000032489	Kif9	-	kinesin family member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122566267-2	chr8	122566167	122566367	+	715.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F2|SINE|Alu	-1748.0	NM_026014	67177.0	Mm.21873	NM_026014	ENSMUSG00000006585	Cdt1	2610318F11Rik|AW545653|C76791|Ris2	chromatin licensing and DNA replication factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128801412-1	chr2	128801312	128801512	+	601.0	f1_c57bl6.idr	exon (NM_008587, exon 19 of 19)	exon (NM_008587, exon 19 of 19)	-16891.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	0.635989022355224	0.497312743092252	0.486162134873646	1.20833870825315	0.641665472655024	1.54285552056676	1.15755314129225	0.478966646455608	1.26525440915088	0.43940802075294	0.909130714404946
Merged-chr6-71627426-2	chr6	71627326	71627526	+	623.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001362200, intron 2 of 25)	B4A|SINE|B4	5260.0	NM_173001	104263.0	Mm.260479	NM_173001	ENSMUSG00000053470	Kdm3a	1700105C21Rik|C230043E16Rik|JHDM2a|Jmjd1|Jmjd1a|KDM2A|TGSA|Tsga	lysine (K)-specific demethylase 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41775978-4	chr19	41775893	41776093	+	968.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027667, intron 9 of 11)	L1MB2|LINE|L1	26091.0	NM_001163495	71085.0	Mm.21646	NM_027667	ENSMUSG00000025154	Arhgap19	4933411B03Rik|AI120128|AW546831|mFLJ00368	Rho GTPase activating protein 19	protein-coding	3.89271467151194	3.74714846066726	3.24748023367912	4.27543431875727	3.00576747875324	3.0028157177169	4.12012422142058	4.15726024176894	-0.216480109201354	0.694006154079959	0.997569417625163
Merged-chr7-98838057-4	chr7	98837960	98838160	+	798.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285795)	promoter-TSS (NM_001285795)	-785.0	NM_009519	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-120565556-4	chr2	120565436	120565636	+	982.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1677.0	NM_011743	20402.0	Mm.485295	NM_011743	ENSMUSG00000027288	Zfp106	Cd-1|D2Dcr28|EyeLinc12|H3a|Sh3bp3|Znf106|sirm|zfp-106	zinc finger protein 106	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-108846680-2	chr11	108846580	108846780	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029606, intron 25 of 27)	intron (NM_029606, intron 25 of 27)	-73669.0	NM_015732	12006.0	Mm.71710	NM_015732	ENSMUSG00000000142	Axin2	Axi1|Axil|Conductin	axin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-38350169-4	chr18	38350078	38350278	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11185.0	NM_011937	26384.0	Mm.22374	NM_011937	ENSMUSG00000052102	Gnpda1	GNPDA|Gnp1|Gnpi|oscillin	glucosamine-6-phosphate deaminase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123897974-1	chr5	123897874	123898074	+	695.0	f1_balb.idr	Intergenic	B4|SINE|B4	-9301.0	NM_026603	68184.0	Mm.28549	NM_026603	ENSMUSG00000023106	Denr	1500003K04Rik	density-regulated protein	protein-coding	2.36782760424473	2.42291904212807	2.77205450852226	1.3320936499991	2.80152113755404	3.06513934249825	1.37345546010602	2.61431122767485	0.56984365449401	0.548348008530812	0.958211390380525
Merged-chr19-16333859-2	chr19	16333759	16333959	+	570.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008139, intron 4 of 6)	B4A|SINE|B4	-18855.0	NR_105832	102465218.0		NR_105832	ENSMUSG00000098718	Mir496b	Gm28028|mmu-mir-496b	microRNA 496b	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-73691993-2	chr12	73691893	73692093	+	709.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008856, intron 3 of 13)	intron (NM_008856, intron 3 of 13)	107197.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80807435-4	chr10	80807330	80807530	+	987.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007445, exon 5 of 5)	exon (NM_007445, exon 5 of 5)	2182.0	NM_007445	11705.0	Mm.376094	NM_007445	ENSMUSG00000035262	Amh	MIS	anti-Mullerian hormone	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-127621326-4	chr5	127621224	127621424	+	982.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3932.0	NM_133895	100561.0	Mm.28506	NM_133895	ENSMUSG00000029416	Slc15a4	AA987064|AW742963|C130069N12Rik|PHT1|PTR4	solute carrier family 15, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64861135-3	chr5	64861051	64861251	+	845.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57628.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-128358430-1	chr1	128358330	128358530	+	580.0	f1_c57bl6.idr	intron (NM_008567, intron 1 of 16)	B1_Mur4|SINE|Alu	1275.0	NM_001313695	17219.0	Mm.4933	NM_008567	ENSMUSG00000026355	Mcm6	ASP-l1|D1Wsu22e|Mcmd6	minichromosome maintenance complex component 6	protein-coding	-1.00134343045903	-1.23445314347098	-1.2444620711464	-1.0972199549058	-1.26014533251785	-1.23228416709048	-1.24219626931013	-1.09468840724069	-1.07557070655604	0.731890363325274	1
Merged-chr2-34976617-4	chr2	34976528	34976728	+	963.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-14856.0	NM_001326601	22029.0	Mm.239514	NM_009421	ENSMUSG00000026875	Traf1	4732496E14Rik	TNF receptor-associated factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26487375-4	chr17	26487259	26487459	+	928.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	21113.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	1.73676672709112	2.18268557007201	1.66569845481457	3.7222359874253	2.36134792063032	3.55883103349501	2.29288251955573	2.61068845284728	0.274532457051839	0.755268387115926	0.998431161219273
Merged-chr6-97310427-2	chr6	97310327	97310527	+	785.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 13 of 23)	L1M4|LINE|L1	-57647.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-145192209-2	chr3	145192109	145192309	+	717.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVL-B4-int|LTR|ERVL	73609.0	NM_025714	52184.0	Mm.259105	NM_025714	ENSMUSG00000028256	Odf2l	4733401D09Rik|9630045K08Rik|D3Ertd250e	outer dense fiber of sperm tails 2-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-74005046-2	chr1	74004946	74005146	+	936.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289895, intron 4 of 32)	intron (NM_001289895, intron 4 of 32)	119401.0	NM_027884	21961.0	Mm.309975	NM_027884	ENSMUSG00000055322	Tns1	1110018I21Rik|1200014E20Rik|AI648117|E030018G17Rik|E030037J05Rik|Tns	tensin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-62729391-3	chr4	62729283	62729483	+	898.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB3|LINE|L1	55409.0	NM_001310706	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70584843-2	chr8	70584651	70584851	+	794.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007924, intron 6 of 11)	intron (NM_007924, intron 6 of 11)	-9730.0	NM_023627	71780.0	Mm.29357	NM_023627	ENSMUSG00000019139	Isyna1	1300017C10Rik|AU018670	myo-inositol 1-phosphate synthase A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-23038301-2	chr2	23038201	23038401	+	788.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077190, intron 1 of 10)	intron (NM_001077190, intron 1 of 10)	1940.0	NM_001077192	11308.0	Mm.205647	NM_007380	ENSMUSG00000058835	Abi1	E3B1|NAP1|Ssh3bp1|abi-1	abl-interactor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-88795432-3	chr10	88795337	88795537	+	927.255554	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175158, exon 22 of 62)	exon (NM_175158, exon 22 of 62)	31377.0	NM_175158	70683.0	Mm.29631	NM_175158	ENSMUSG00000004356	Utp20	3830408P06Rik|AA617408|Drim|mDRIM|mDRIN	UTP20 small subunit processome component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-28518472-2	chr2	28518372	28518572	+	848.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009058, intron 1 of 17)	intron (NM_009058, intron 1 of 17)	5305.0	NM_001145834	19730.0	Mm.5236	NM_009058	ENSMUSG00000026821	Ralgds	Gnds|Rgds|mKIAA1308	ral guanine nucleotide dissociation stimulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-44404097-3	chr19	44403980	44404180	+	628.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009127, intron 2 of 5)	MIRc|SINE|MIR	3629.0	NM_009127	20249.0	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-22119650-4	chr9	22119555	22119755	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2460.0	NM_001357312	66126.0	Mm.29801	NM_170777	ENSMUSG00000013822	Elof1	1110011K10Rik	ELF1 homolog, elongation factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-67193920-4	chr17	67193833	67194033	+	993.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	160526.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	2.18756136736704	1.35321628154029	2.91613924930169	2.19188531568353	3.04961149057639	2.35713132244221	1.79974717730416	1.74583870031877	0.181030079434603	0.85017842808757	0.998431161219273
Merged-chr17-35076764-2	chr17	35076655	35076855	+	679.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027366)	promoter-TSS (NM_027366)	-187.0	NM_027366	70274.0	Mm.250491	NM_027366	ENSMUSG00000013766	Ly6g6e	2310011I02Rik|G6e	lymphocyte antigen 6 complex, locus G6E	protein-coding	1.85652386378917	3.3739330692123	2.63201969766763	2.94939708544031	3.22356404925661	2.61340337357703	2.02943401076424	2.68212333861059	-0.185325715307497	0.812322371756164	0.998431161219273
Merged-chr9-58551826-2	chr9	58551726	58551926	+	763.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10886.0	NM_133983	102657.0	Mm.5356	NM_133983	ENSMUSG00000035914	Cd276	6030411F23Rik|AU016588|B7RP-2|B7h3	CD276 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-96476006-2	chr15	96475906	96476106	+	634.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-15163.0	NM_028148	72193.0	Mm.324474	NM_028148	ENSMUSG00000033228	Scaf11	1110061H03Rik|2610510E10Rik|AI462454|CASP11|SIP1|SRRP129|Sfrs2ip|Srsf2ip|mKIAA3013	SR-related CTD-associated factor 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-93240929-4	chr13	93240832	93241032	+	839.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48515.0	NM_001361537	100715.0	Mm.242865	NM_133905	ENSMUSG00000042167	Papd4	8030446C20Rik|AI649009|GLD-2|Gld2	PAP associated domain containing 4	protein-coding	1.19958945591637	1.10048718104672	1.31602530020056	0.710445388772607	1.38986781655605	1.10895669174521	1.07094099753943	0.71184347076869	-0.0250146991423494	0.98607377694124	0.998431161219273
Merged-chr5-36728174-2	chr5	36728074	36728274	+	835.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20505.0	NM_133724	117197.0	Mm.46744	NM_133724	ENSMUSG00000060708	Bloc1s4	2610101N07Rik|Blos4|Cno	biogenesis of lysosomal organelles complex-1, subunit 4, cappuccino	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-73891843-1	chr17	73891743	73891943	+	545.0	f1_balb.idr	intron (NM_011723, intron 33 of 35)	intron (NM_011723, intron 33 of 35)	58353.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-62594130-3	chr10	62593998	62594198	+	881.533325	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_019553, exon 4 of 15)	exon (NM_019553, exon 4 of 15)	8200.0	NM_019553	56200.0	Mm.413275	NM_019553	ENSMUSG00000020075	Ddx21	AI255159|AL022742|D10Ertd645e|D10Wsu42e	DEAD (Asp-Glu-Ala-Asp) box polypeptide 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-56713850-4	chr19	56713755	56713955	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8517.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-137300475-2	chr4	137300375	137300575	+	968.75	f1_balb.idr|f1_c57bl6.idr	TTS (NM_009523)	TTS (NM_009523)	22840.0	NM_009523	22417.0	Mm.20355	NM_009523	ENSMUSG00000036856	Wnt4	Wnt-4	wingless-type MMTV integration site family, member 4	protein-coding	-1.18378942727406	-1.15669478905697	-0.457913181653105	-1.17806440097404	-1.18323730008524	-1.15415234459186	-1.16577117532349	-1.17633933179771	-2.81844548480871	0.412768592413622	1
Merged-chr5-130205711-4	chr5	130205603	130205803	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199059, intron 4 of 8)	intron (NM_001199059, intron 4 of 8)	-14041.0	NM_001081394	71667.0	Mm.258508	NM_027854	ENSMUSG00000053094	Tmem248	0610007L01Rik|A930023A16Rik|AW557951|G430067H08Rik	transmembrane protein 248	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-100109688-2	chr12	100109588	100109788	+	584.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2643.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120715421-4	chr8	120715324	120715524	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20934.0	NM_008320	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-85077171-4	chr8	85076977	85077177	+	779.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026399, intron 5 of 8)	intron (NM_026399, intron 5 of 8)	3669.0	NM_026399	67836.0	Mm.334680	NM_026399	ENSMUSG00000005150	Wdr83	1500041N16Rik|Morg1	WD repeat domain containing 83	protein-coding	2.89139097451626	4.27425373675765	2.80963709306772	2.84505344979607	3.16730831957461	3.62697544474737	2.36987086531722	2.74060327088407	-0.509483670978439	0.458879445499265	0.919607527898796
Merged-chr5-62762742-4	chr5	62762646	62762846	+	906.8214109999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178407, intron 1 of 32)	intron (NM_178407, intron 1 of 32)	3431.0	NM_178407	212285.0	Mm.244403	NM_178407	ENSMUSG00000037999	Arap2	Centd1|Gm148|mKIAA0580	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-98295626-2	chr9	98295526	98295726	+	841.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357446)	promoter-TSS (NM_001357446)	-944.0	NM_001357445	74080.0	Mm.294082	NM_144533	ENSMUSG00000032456	Nmnat3	4933408N02Rik|PNAT3	nicotinamide nucleotide adenylyltransferase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141486309-1	chr7	141486209	141486409	+	543.0	f1_balb.idr	intron (NM_001252588, intron 2 of 7)	intron (NM_001252588, intron 2 of 7)	9929.0	NM_001252588	64540.0	Mm.489619	NM_053082	ENSMUSG00000025511	Tspan4	AI325509|AI746565|D130042I01Rik|NAG-2|Tm4sf7|Tspan-4	tetraspanin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-63713220-2	chr9	63713120	63713320	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016769, intron 1 of 8)	intron (NM_016769, intron 1 of 8)	44774.0	NM_016769	17127.0	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-114068077-2	chr14	114067977	114068177	+	569.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4A|LINE|L1	-763888.0	NR_045661	75822.0	Mm.410813	NR_045661	ENSMUSG00000115320	4930524C18Rik	-	RIKEN cDNA 4930524C18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-94811181-2	chr8	94811081	94811281	+	812.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011332, intron 1 of 2)	intron (NM_011332, intron 1 of 2)	728.0	NM_011332	20295.0	Mm.41988	NM_011332	ENSMUSG00000031780	Ccl17	Abcd-2|Scya17|Scya17l|Tarc	chemokine (C-C motif) ligand 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25680719-4	chr7	25680610	25680810	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001362154)	promoter-TSS (NM_001362154)	-70.0	NM_001362154	232987.0	Mm.22849	NM_172148	ENSMUSG00000063439	B9d2	stumpy	B9 protein domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-108401902-4	chr3	108401782	108401982	+	974.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004177, intron 9 of 33)	intron (NM_001004177, intron 9 of 33)	13612.0	NM_017392	53883.0	Mm.39728	NM_017392	ENSMUSG00000068740	Celsr2	Adgrc2|EGFL2|Flamingo1|flamingo|mKIAA0279|mfmi1	cadherin, EGF LAG seven-pass G-type receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-8699837-2	chr4	8699737	8699937	+	767.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001277149, intron 1 of 37)	RSINE1|SINE|B4	9431.0	NM_001277149	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-80074936-4	chr15	80074828	80075028	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3651.0	NR_028282	100302601.0		NR_028282	ENSMUSG00000077734	Snord83b	MBII-10	small nucleolar RNA, C/D box 83B	snoRNA	4.61831672581694	5.1189596028025	3.9810028944907	5.421949160172	4.85374928678044	5.32475517367047	2.71548781489583	4.43836289433444	-0.33246757680508	0.508640225531328	0.943622639080647
Merged-chr2-115582067-2	chr2	115581967	115582167	+	776.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_207264, intron 1 of 10)	intron (NM_207264, intron 1 of 10)	351.0	NM_001145898	399568.0	Mm.134929	NM_207264	ENSMUSG00000040282	BC052040	-	cDNA sequence BC052040	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-55665028-4	chr4	55664936	55665136	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-132561.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	5.32942429594611	4.92646379025187	5.0228279190089	4.45321502769338	5.17075830853045	5.45511961572157	5.16718932235124	5.22135236056239	0.332109815985999	0.294009493118933	0.798191705447
Merged-chr3-8998515-4	chr3	8998416	8998616	+	956.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	5688.0	NM_001357073	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-85424125-3	chr9	85424013	85424213	+	685.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a-int|LTR|ERVL-MaLR	-96963.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	1.12183443214959	1.87904653242135	1.60782606092051	1.18020085212543	1.26132605133449	0.846120637482694	1.50611445763672	0.81882598901215	-1.30209353703376	0.325670218302829	0.827782420413875
Merged-chr1-33719965-4	chr1	33719866	33720066	+	998.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008999)	promoter-TSS (NM_008999)	70.0	NM_008999	19335.0	Mm.86744	NM_008999	ENSMUSG00000004768	Rab23	AW545388|opb|opb2	RAB23, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-73527965-2	chr7	73527865	73528065	+	659.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081345, intron 2 of 38)	B2_Mm1t|SINE|B2	13781.0	NM_001081345	244059.0	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-85920877-2	chr13	85920775	85920975	+	650.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	125920.0	NM_007749	12867.0	Mm.378898	NM_007749	ENSMUSG00000017778	Cox7c	COXVIIc|Cox7c1	cytochrome c oxidase subunit VIIc	protein-coding	-1.50811478453619	-0.99851579554048	-1.48484165847197	-1.49312904261012	-1.50577282675516	-1.47256636097272	-1.48255773576353	-1.49164560481169	-2.24133836997777	0.518237887813808	1
Merged-chr11-60933653-4	chr11	60933520	60933720	+	974.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008928, intron 1 of 11)	intron (NM_008928, intron 1 of 11)	1563.0	NM_008928	26397.0	Mm.18494	NM_008928	ENSMUSG00000018932	Map2k3	AW212142|MEK3|MKK3|Prkmk3|mMKK3b	mitogen-activated protein kinase kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-113634049-4	chr5	113633962	113634162	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008153, intron 1 of 2)	intron (NM_008153, intron 1 of 2)	9541.0	NM_001359060	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-55736869-4	chr17	55736764	55736964	+	900.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13120.0	NM_139138	52614.0	Mm.210497	NM_139138	ENSMUSG00000032915	Adgre4	D17Ertd479e|Egf-tm7|Emr4|Fire|Gpr127	adhesion G protein-coupled receptor E4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-58160709-4	chr18	58160624	58160824	+	954.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010181, intron 5 of 64)	intron (NM_010181, intron 5 of 64)	49202.0	NM_010181	14119.0	Mm.20271	NM_010181	ENSMUSG00000024598	Fbn2	BC063774|Fib-2|mKIAA4226|sne|sy	fibrillin 2	protein-coding	4.76096176989193	5.36967259724578	4.84643280095388	5.26787227473218	4.79634333951683	5.33680430432635	4.79308045135249	4.74443990313024	-0.176269743749815	0.594143419724295	0.9706660979479
Merged-chr11-60930967-4	chr11	60930910	60931110	+	876.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027800, intron 1 of 1)	L2a|LINE|L2	857.0	NR_027800	24082.0	Mm.46270	NM_025293	ENSMUSG00000042549	Map2k3os	F3-1|Gm16516|Gtlf3a	mitogen-activated protein kinase kinase 3, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-69399582-2	chr18	69399482	69399682	+	665.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 3 of 19)	intron (NM_001361128, intron 3 of 19)	53422.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	-1.84456824087626	-1.81369603968745	-1.82303204814395	-1.83070092346192	-1.84240106943552	-1.51787681909439	-1.82091858046888	-1.82932819844659	1.64481029852639	0.639921510788462	1
Merged-chr11-115354454-2	chr11	115354354	115354554	+	899.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_001346774, exon 12 of 19)	exon (NM_001346774, exon 12 of 19)	13265.0	NM_175454	217310.0	Mm.205707	NM_175454	ENSMUSG00000034586	Hid1	C630004H02Rik	HID1 domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-110130810-2	chr8	110130710	110130910	+	653.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR37-int|LTR|ERV1	37396.0	NM_007586	12308.0	Mm.2755	NM_007586	ENSMUSG00000003657	Calb2	CR	calbindin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-118534524-4	chr7	118534419	118534619	+	959.6083369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1163.0	NM_009940	12850.0	Mm.20634	NM_009940	ENSMUSG00000030652	Coq7	clk-1	demethyl-Q 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-41601204-4	chr13	41601122	41601322	+	958.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE-int|LTR|ERVL-MaLR	-4994.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-8723315-4	chr19	8723205	8723405	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_002896)	promoter-TSS (NR_002896)	64.0	NM_001161413	17254.0	Mm.4114	NM_008577	ENSMUSG00000010095	Slc3a2	4F2|4F2HC|AI314110|Cd98|Ly-10|Ly-m10|Ly10|Mdu1|Mgp-2hc|NACAE	solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-130902390-4	chr4	130902278	130902478	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10956.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16189644-1	chr7	16189544	16189744	+	1000.0	f1_c57bl6.idr	Intergenic	Intergenic	14249.0	NR_102730	17537.0	Mm.360516	NM_008627	ENSMUSG00000041420	Meis3	AI573393|Mrg2	Meis homeobox 3	protein-coding	-1.56355737717652	-1.81244775989375	-1.82128546162293	-1.82854501295842	-1.83962066705452	-1.81053259306168	-1.81928479966835	-1.82724555674025	-1.28500227969968	0.715751224811686	1
Merged-chr2-4591813-4	chr2	4591723	4591923	+	939.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177844, intron 5 of 11)	MTEb|LTR|ERVL-MaLR	32069.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34144320-2	chr17	34144220	34144420	+	612.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-1096.0	NM_010388	15000.0	Mm.195060	NM_010388	ENSMUSG00000037548	H2-DMb2	H-2Mb2|H2-Mb2	histocompatibility 2, class II, locus Mb2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-35937926-2	chr18	35937826	35938026	+	854.1666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26904.0	NM_001289602	74002.0	Mm.196944	NM_028707	ENSMUSG00000024347	Psd2	6330404E20Rik|AW125584|EFA6C	pleckstrin and Sec7 domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-164074835-4	chr1	164074748	164074948	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164059, intron 6 of 7)	intron (NM_001164059, intron 6 of 7)	12772.0	NM_011346	20343.0	Mm.1461	NM_011346	ENSMUSG00000026581	Sell	AI528707|CD62L|L-selectin|LECAM-1|Lnhr|Ly-22|Ly-m22|Lyam-1|Lyam1	selectin, lymphocyte	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-27171974-2	chr7	27171874	27172074	+	707.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029391, intron 7 of 7)	intron (NM_029391, intron 7 of 7)	4119.0	NR_037283	100526505.0		NR_037283	ENSMUSG00000093348	Mir3101	mir-3101|mmu-mir-3101	microRNA 3101	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44147523-2	chr9	44147423	44147623	+	893.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12865.0	NM_001359530	84004.0	Mm.275003	NM_023061	ENSMUSG00000032135	Mcam	1-gicerin|AV025631|CD146|CD149|Muc18|s-endo|s-gicerin	melanoma cell adhesion molecule	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99334383-2	chr15	99334283	99334483	+	654.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310622, intron 4 of 25)	intron (NM_001310622, intron 4 of 25)	31099.0	NM_001348256	54614.0	Mm.358668	NM_018786	ENSMUSG00000023007	Prpf40b	2610317D23Rik|Hypc	pre-mRNA processing factor 40B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-88724198-2	chr4	88724098	88724298	+	640.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1690.0	NM_172871	242521.0	Mm.260601	NM_172871	ENSMUSG00000070923	Klhl9	8030469P05|C530050O22Rik|mKIAA1354	kelch-like 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-121429399-4	chr10	121429294	121429494	+	998.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138956, intron 1 of 4)	intron (NM_138956, intron 1 of 4)	46856.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-69802651-1	chr14	69802551	69802751	+	567.0	f0_balb.idr	intron (NM_153514, intron 1 of 9)	intron (NM_153514, intron 1 of 9)	2894.0	NM_153514	246710.0	Mm.102367	NM_153514	ENSMUSG00000022075	Rhobtb2	Dbc2|E130206H14Rik|mKIAA0717	Rho-related BTB domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-15331667-3	chr3	15331552	15331752	+	795.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001076679, intron 1 of 2)	intron (NM_001076679, intron 1 of 2)	650.0	NM_001076679	751864.0	Mm.431296	NM_001076679	ENSMUSG00000078783	Gm9733	-	predicted gene 9733	protein-coding	-0.58060643324573	-0.570939626835198	-0.574124052025716	-0.576569384143864	-0.443159535281771	-0.384018890083227	-0.403194355350761	-0.0670339061048496	3.27192798793746	0.182593660905752	1
Merged-chr4-47351694-4	chr4	47351607	47351807	+	865.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID2|SINE|ID	-1515.0	NM_001312868	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-11776148-7	chr11	11776049	11776249	+	883.142883	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32813.0	NM_021891	60530.0	Mm.236114	NM_021891	ENSMUSG00000035455	Fignl1	-	fidgetin-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-104043109-2	chr3	104043009	104043209	+	641.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133853, intron 13 of 21)	B1_Mur1|SINE|Alu	-74793.0	NR_030676	100125931.0	Mm.400392	NR_030676	ENSMUSG00000089998	Phtf1os	A130049A11Rik	putative homeodomain transcription factor 1, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28522700-4	chr17	28522622	28522822	+	920.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8139.0	NM_026290	67645.0	Mm.46170	NM_026290	ENSMUSG00000024223	Armc12	4930511I11Rik|AV041658	armadillo repeat containing 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-116307013-1	chr7	116306913	116307113	+	565.0	f0_balb.idr	intron (NM_001305185, intron 3 of 26)	intron (NM_001305185, intron 3 of 26)	1363.0	NM_001305185	233765.0	Mm.3741	NM_172743	ENSMUSG00000045659	Plekha7	A430081P20Rik|AI414265	pleckstrin homology domain containing, family A member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-66095760-2	chr5	66095652	66095852	+	610.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_139065, intron 2 of 6)	intron (NM_139065, intron 2 of 6)	2427.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	0.24119844795723	0.601477688348902	-0.124248693344249	-0.128114355174733	0.249731605313437	-0.11810960229688	-0.123143695154511	-0.127438995759438	-1.68578806838209	0.47154305737287	1
Merged-chr1-171011861-4	chr1	171011761	171011961	+	915.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7065.0	NM_144559	246256.0	Mm.251254	NM_144559	ENSMUSG00000059089	Fcgr4	4833442P21Rik|CD16-2|FcgRIV|FcgammaRIV|Fcgr3a|Fcrl3	Fc receptor, IgG, low affinity IV	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101660161-2	chr11	101660061	101660261	+	654.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5380.0	NM_025404	80981.0	Mm.266840	NM_025404	ENSMUSG00000034936	Arl4d	1110036H21Rik|ARL6|AW456149|Arf4l|Arfl4|Arl5	ADP-ribosylation factor-like 4D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-93435768-3	chr2	93435697	93435897	+	854.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271430, intron 2 of 8)	intron (NM_001271430, intron 2 of 8)	-13790.0	NR_105967	102465605.0		NR_105967	ENSMUSG00000099238	Mir7001	Gm27886|mmu-mir-7001	microRNA 7001	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-133511639-4	chr2	133511543	133511743	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40516.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26168184-4	chr17	26168101	26168301	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159598, intron 2 of 9)	ORR1B1|LTR|ERVL-MaLR	29515.0	NM_001159598	12005.0	Mm.23684	NM_009733	ENSMUSG00000024182	Axin1	AI316800|Axin|Fu|Kb|Ki|fused|kinky|knobbly	axin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-99168591-4	chr10	99168483	99168683	+	968.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153333, intron 11 of 12)	intron (NR_153333, intron 11 of 12)	60448.0	NM_015737	14426.0	Mm.314	NM_015737	ENSMUSG00000090035	Galnt4	AV011803	polypeptide N-acetylgalactosaminyltransferase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-12312070-4	chr15	12311977	12312177	+	914.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9419.0	NM_025673	66629.0	Mm.157655	NM_025673	ENSMUSG00000022200	Golph3	4733401N08Rik|5730410D03Rik|AW413496	golgi phosphoprotein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-20693514-2	chr14	20693414	20693614	+	838.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172596, intron 22 of 22)	intron (NM_172596, intron 22 of 22)	-1454.0	NM_028428	73068.0	Mm.277552	NM_028428	ENSMUSG00000039357	Fut11	3110009G03Rik|AI317183	fucosyltransferase 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-34442742-1	chr10	34442642	34442842	+	543.0	f1_balb.idr	Intergenic	Intergenic	-24191.0	NM_001347463	319638.0	Mm.73467	NM_176968	ENSMUSG00000039480	Nt5dc1	6030401B09Rik|AW987726|Nt5c2l1	5'-nucleotidase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-7928032-4	chr17	7927936	7928136	+	798.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145968, intron 4 of 9)	intron (NM_145968, intron 4 of 9)	2036.0	NM_145968	72536.0	Mm.119680	NM_145968	ENSMUSG00000033450	Tagap	2610315E15Rik|TRD|Tcd-1|Tcd1|Tcd1a|tcs-1|tcs1	T cell activation Rho GTPase activating protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-148990069-4	chr6	148989969	148990169	+	999.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177192, exon 21 of 21)	3' UTR (NM_177192, exon 21 of 21)	-43599.0	NM_001361398	56306.0	Mm.18637	NM_019643	ENSMUSG00000039985	Fam60a	Ppcs1|Pptcs1|Sinhcaf|Tera	family with sequence similarity 60, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-88831674-4	chr6	88831586	88831786	+	886.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10249.0	NM_001362152	80283.0	Mm.166858	NM_030251	ENSMUSG00000030083	Abtb1	AI847549|BC003234|BPOZ|EF1ABP	ankyrin repeat and BTB (POZ) domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-107561333-4	chr8	107561197	107561397	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10053.0	NR_029553	387158.0		NR_029553	ENSMUSG00000065439	Mir140	Mirn140|mir-140|mmu-mir-140	microRNA 140	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30472132-4	chr2	30472032	30472232	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_030244)	TTS (NM_030244)	2067.0	NM_030244	72500.0	Mm.295464	NM_030244	ENSMUSG00000089762	Ier5l	2610524G09Rik	immediate early response 5-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-74938913-2	chr15	74938796	74938996	+	609.333374	f0_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16155.0	NM_001164039	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	0.399451880458848	0.0644621979040876	0.059617200528909	0.0558944119915251	0.407586209915251	0.403186066668112	0.0606838759708294	0.561354365122435	1.79825688975485	0.394505031776513	1
Merged-chr6-84612465-2	chr6	84612365	84612565	+	605.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18557.0	NM_001177713	232174.0	Mm.255246	NM_175475	ENSMUSG00000063415	Cyp26b1	CP26|P450RAI-2	cytochrome P450, family 26, subfamily b, polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-46361884-2	chr4	46361784	46361984	+	795.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	17690.0	NM_183298	110805.0	Mm.354634	NM_183298	ENSMUSG00000070990	Foxe1	Titf2	forkhead box E1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-14545433-4	chr10	14545300	14545500	+	918.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001002268)	promoter-TSS (NM_001002268)	-364.0	NM_001002268	215798.0	Mm.440142	NM_001002268	ENSMUSG00000039116	Adgrg6	1190004A11Rik|AI449247|AW045736|DREG|Gm222|Gpr126	adhesion G protein-coupled receptor G6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-79960032-4	chr10	79959942	79960142	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175450)	promoter-TSS (NM_175450)	-110.0	NM_175450	216156.0	Mm.35828	NM_175450	ENSMUSG00000035754	Wdr18	2310012I10Rik|AU044733|AW122032	WD repeat domain 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76352791-2	chr15	76352691	76352891	+	692.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026859, intron 3 of 7)	intron (NM_026859, intron 3 of 7)	1497.0	NM_026859	68877.0	Mm.289680	NM_026859	ENSMUSG00000022553	Maf1	1110068E11Rik|AU042856	MAF1 homolog, negative regulator of RNA polymerase III	protein-coding	-2.18233058068552	-2.15536956715525	-2.16352280018114	-2.04193253143548	-2.18043796738662	-2.15360272754651	-2.16167708693786	-2.16902129354933	-0.683654500252594	0.846597994014493	1
Merged-chr13-104931970-1	chr13	104931870	104932070	+	664.0	f0_balb.idr	Intergenic	Intergenic	-68077.0	NM_029984	77803.0	Mm.159995	NM_029984	ENSMUSG00000042655	Fam159b	A930021C24Rik|Shisal2b	family with sequence similarity 159, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-161512126-1	chr2	161512026	161512226	+	761.400024	f0_c57.idr	Intergenic	Intergenic	-403040.0	NR_126509	71389.0	Mm.122738	NM_173368	ENSMUSG00000057133	Chd6	5430439G14Rik|6330406J24Rik|CHD-6	chromodomain helicase DNA binding protein 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-119676510-3	chr8	119676378	119676578	+	623.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023395, intron 1 of 6)	intron (NM_023395, intron 1 of 6)	10113.0	NM_023395	67866.0	Mm.87599	NM_023395	ENSMUSG00000023336	Wfdc1	2310058A03Rik|ps20	WAP four-disulfide core domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-34278322-4	chr13	34278222	34278422	+	984.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033167, intron 3 of 10)	intron (NM_001033167, intron 3 of 10)	66860.0	NM_001033167	73102.0	Mm.23932	NM_001033167	ENSMUSG00000038267	Slc22a23	3110004L20Rik	solute carrier family 22, member 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167101890-4	chr2	167101804	167102004	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008420, exon 2 of 2)	3' UTR (NM_008420, exon 2 of 2)	36611.0	NR_028540	100217443.0		NR_028540		Snord12	MBII-99	small nucleolar RNA, C/D box 12	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-130839057-2	chr4	130838957	130839157	+	708.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46520.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-55548890-2	chr18	55548791	55548991	+	884.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	C-rich|Low_complexity|Low_complexity	-556300.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	-0.861335013053442	-0.0789704642554707	-0.661073092720189	-0.856724297531445	-0.860647807769238	-0.844895787288821	-0.853167358525472	-0.856240314372914	-3.22176204313607	0.267536253145129	1
Merged-chr8-8685587-2	chr8	8685487	8685687	+	785.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_176849, intron 1 of 3)	intron (NM_176849, intron 1 of 3)	4575.0	NR_106114	102465762.0		NR_106114	ENSMUSG00000098917	Mir7654	Gm27748|mmu-mir-7654	microRNA 7654	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-57572730-2	chr8	57572630	57572830	+	562.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001167981, intron 2 of 11)	intron (NM_001167981, intron 2 of 11)	60887.0	NM_008252	97165.0	Mm.276881	NM_008252	ENSMUSG00000054717	Hmgb2	C80539|HMG-2|Hmg2	high mobility group box 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-61502233-2	chr9	61502133	61502333	+	573.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	129867.0	NM_001083927	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-136881692-2	chr5	136881592	136881792	+	710.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_024474, intron 1 of 12)	CpG	1523.0	NM_001346699	140709.0	Mm.295020	NM_024474	ENSMUSG00000004415	Col26a1	9430032K24Rik|BC002218|Col26a|Emid2|Emu2	collagen, type XXVI, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6360154-5	chr19	6360107	6360307	+	874.9500119999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR25A|LTR|ERVK	-3483.0	NM_011750	22668.0	Mm.256422	NM_011750	ENSMUSG00000024949	Sf1	BBP|MZFM|WBP4|Zfp162	splicing factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-65380660-4	chr14	65380575	65380775	+	897.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199029, intron 1 of 9)	intron (NM_199029, intron 1 of 9)	21999.0	NM_199029	380912.0	Mm.270087	NM_199029	ENSMUSG00000034522	Zfp395	BC053701|Gm910	zinc finger protein 395	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152801256-2	chr1	152801156	152801356	+	674.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010877, intron 1 of 15)	B1F|SINE|Alu	1103.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-180043191-4	chr2	180043080	180043280	+	996.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011969)	promoter-TSS (NM_011969)	697.0	NM_178750	269397.0	Mm.63068	NM_178750	ENSMUSG00000039086	Ss18l1	A230053O16Rik|CREST	SS18, nBAF chromatin remodeling complex subunit like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81636358-2	chr10	81636258	81636458	+	731.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027480, intron 5 of 19)	intron (NM_027480, intron 5 of 19)	7818.0	NM_027480	70615.0	Mm.304382	NM_027480	ENSMUSG00000054708	Ankrd24	4631433D01Rik|5730519E19Rik|D10Bur2e	ankyrin repeat domain 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84010037-3	chr8	84009942	84010142	+	858.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001291292)	TTS (NM_001291292)	1591.0	NR_035431	100316677.0		NR_035431	ENSMUSG00000080665	Mir1199	Mirn1199|mir-1199|mmu-mir-1199	microRNA 1199	ncRNA	2.23713035169478	2.11282858729896	1.91109654690475	1.97890786666239	1.49488160503522	2.54442181685894	1.41125878164967	1.14447107852392	-0.735279051211736	0.487726587791405	0.932994834234898
Merged-chr11-48789990-2	chr11	48789890	48790090	+	567.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10370.0	NM_008143	14694.0	Mm.5305	NM_008143	ENSMUSG00000020372	Rack1	AL033335|GB-like|Gnb2-rs1|Gnb2l1|p205	receptor for activated C kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-143307558-4	chr6	143307451	143307651	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61663.0	NR_027803	52285.0	Mm.354898	NM_001033129		D6Ertd474e	1700001I24Rik|AU023129	DNA segment, Chr 6, ERATO Doi 474, expressed	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-31099709-2	chr7	31099545	31099745	+	850.666626	f1_balb.idr|f1_c57bl6.idr	exon (NM_001276269, exon 11 of 13)	exon (NM_001276269, exon 11 of 13)	11352.0	NM_001276269	15451.0	Mm.19182	NM_008281	ENSMUSG00000001249	Hpn	Hlb320	hepsin	protein-coding	0.965301757939877	1.94361705991739	0.874467765755327	0.848737555482289	0.615326776887066	1.677783129325	1.07231657568201	0.635059674970024	-0.61257692298738	0.671005492506434	0.99367117984352
Merged-chr3-75297631-4	chr3	75297565	75297765	+	852.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27587.0	NM_026460	67931.0	Mm.259446	NM_026460	ENSMUSG00000034139	Serpini2	Spi14	serine (or cysteine) peptidase inhibitor, clade I, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-50292475-4	chr11	50292381	50292581	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175334)	promoter-TSS (NM_175334)	-145.0	NM_175334	103806.0	Mm.51116	NM_175334	ENSMUSG00000050567	Maml1	AI644666|AW743257|D930008C07Rik|Mam-1|Mam1|mKIAA0200	mastermind like transcriptional coactivator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36279349-4	chr1	36279257	36279457	+	972.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5932.0	NM_153408	214854.0	Mm.389110	NM_153408	ENSMUSG00000047180	Neurl3	2010300P06Rik|Lincr	neuralized E3 ubiquitin protein ligase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-58503075-3	chr16	58502976	58503176	+	848.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357433, intron 2 of 10)	L1ME1|LINE|L1	20350.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-133498517-2	chr2	133498417	133498617	+	839.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53642.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-28944443-4	chr4	28944349	28944549	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290434, intron 9 of 16)	intron (NM_001290434, intron 9 of 16)	-123630.0	NR_151693	102634169.0		NR_151693		Gm11917	-	predicted gene 11917	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-120679217-4	chr7	120679079	120679279	+	854.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164580, intron 1 of 2)	intron (NM_001164580, intron 1 of 2)	1559.0	NM_001164580	233812.0	Mm.276479	NM_001164580	ENSMUSG00000046096	Mosmo	Atthog	modulator of smoothened	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171321609-2	chr1	171321509	171321709	+	688.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7199.0	NM_001357550	21945.0	Mm.270139	NM_011615	ENSMUSG00000013973	Dedd	CASP8IP1|DEFT|Dedpro1|FLDED1|KE05	death effector domain-containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-116514173-2	chr7	116514073	116514273	+	845.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360375, intron 3 of 14)	B2_Mm2|SINE|B2	9804.0	NM_001360375	53322.0	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-46356012-1	chr4	46355912	46356112	+	611.0	f0_balb.idr	Intergenic	Intergenic	11818.0	NM_183298	110805.0	Mm.354634	NM_183298	ENSMUSG00000070990	Foxe1	Titf2	forkhead box E1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-57674662-1	chr11	57674562	57674762	+	554.0	f1_c57bl6.idr	intron (NM_134189, intron 1 of 11)	intron (NM_134189, intron 1 of 11)	-25168.0	NR_153850	78762.0	Mm.362149	NR_153850		4933424L21Rik	-	RIKEN cDNA 4933424L21 gene	ncRNA	0.844084789697994	0.905043707351725	2.04202545888764	0.870391420978689	2.02710142778557	1.54459276916752	1.86717724589177	1.28070280193115	1.29178315659036	0.336852792961413	0.83703930093451
Merged-chr5-122157313-2	chr5	122157220	122157420	+	600.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013636)	promoter-TSS (NM_013636)	-959.0	NM_013636	19047.0	Mm.280784	NM_013636	ENSMUSG00000004455	Ppp1cc	PP-1G|PP1|dis2m1	protein phosphatase 1, catalytic subunit, gamma isoform	protein-coding	1.28565605920026	1.36541254714071	0.887270766555865	0.684369656637819	1.29841924747423	1.37771584300707	0.893306483892695	0.685867297252073	0.0404833426575006	0.977875354776878	0.998431161219273
Merged-chr9-41135036-4	chr9	41134929	41135129	+	955.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176860, intron 1 of 13)	intron (NM_176860, intron 1 of 13)	23033.0	NM_176860	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	1.76880319193128	1.26092097836264	2.27717852422472	1.37270556242105	1.78458757828334	1.26874277805761	1.71709945520544	0.988981281205215	-0.799292985393552	0.49722571528364	0.936897994490085
Merged-chr14-55730343-4	chr14	55730237	55730437	+	969.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8074.0	NM_001360387	56187.0	Mm.87216	NM_019519	ENSMUSG00000040472	Rabggta	gm	Rab geranylgeranyl transferase, a subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-41047451-4	chr8	41047355	41047555	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005863, intron 5 of 13)	intron (NM_001005863, intron 5 of 13)	-5524.0	NM_001005865	102103.0	Mm.149438	NM_001005863	ENSMUSG00000045636	Mtus1	AI481402|ATBP135|Atip1|B430010I23Rik|B430305I03Rik|C85752|Cctsg1-440|MD44|MTSG1|mKIAA1288	mitochondrial tumor suppressor 1	protein-coding	4.31207965007179	3.97705060215931	4.68346222883696	3.15484122460714	4.46444404305637	4.08415273469077	4.97632437907262	4.03225149053875	0.395656860616229	0.399265290874374	0.885176145862419
Merged-chr15-83447677-2	chr15	83447577	83447777	+	690.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358643, intron 1 of 9)	intron (NM_001358643, intron 1 of 9)	203.0	NM_001358644	23970.0	Mm.23978	NM_011862	ENSMUSG00000016664	Pacsin2	AI197433	protein kinase C and casein kinase substrate in neurons 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-59645191-1	chr2	59645091	59645291	+	1000.0	f0_balb.idr	intron (NM_198294, intron 1 of 26)	intron (NM_198294, intron 1 of 26)	-1578.0	NM_001290659	66860.0	Mm.27917	NM_198294	ENSMUSG00000035168	Tanc1	1200003E16Rik|Tanc|mKIAA1728	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118616551-2	chr11	118616451	118616651	+	621.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001024931, intron 3 of 14)	intron (NM_001024931, intron 3 of 14)	139719.0	NM_001359368	217364.0	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-128411292-4	chr6	128411187	128411387	+	753.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133927, intron 10 of 11)	B3|SINE|B2	11521.0	NM_001162858	60345.0	Mm.269883	NM_021717	ENSMUSG00000001520	Nrip2	AW491344|NIX1	nuclear receptor interacting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-34043032-4	chr11	34042926	34043126	+	921.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155520, intron 4 of 4)	A-rich|Low_complexity|Low_complexity	-3902.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41482441-1	chr19	41482341	41482541	+	1000.0	f0_balb.idr	Intergenic	CpG	-42811.0	NM_001326287	627352.0	Mm.395111	NM_001326287		Morf4l1b	EG627352|Gm6747	mortality factor 4 like 1B	protein-coding	4.25732739970562	4.89127619903793	3.90806372133467	4.37713258142554	4.45076763313849	4.21412555612884	4.01064128398192	3.166227588288	-0.474041349212422	0.303538155301661	0.805462835517226
Merged-chr4-142084038-7	chr4	142083949	142084149	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027137)	promoter-TSS (NR_027137)	-249.0	NR_027137	100038693.0	Mm.402714	NR_027137	ENSMUSG00000073728	Tmem51os1	Gm10565|Tmem51as1	Tmem51 opposite strand 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-45246273-4	chr9	45246197	45246397	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198971, intron 4 of 4)	intron (NM_001198971, intron 4 of 4)	20410.0	NR_106054	102466803.0		NR_106054	ENSMUSG00000098361	Mir7086	Gm27643|mmu-mir-7086	microRNA 7086	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4181159-2	chr19	4181059	4181259	+	706.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5680.0	NM_134148	107239.0	Mm.482310	NM_134148	ENSMUSG00000075289	Carns1	AI790298|Atpgd1|mKIAA1394	carnosine synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-53191983-4	chr2	53191892	53192092	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022989)	promoter-TSS (NM_022989)	-92.0	NM_022989	65103.0	Mm.37623	NM_022989	ENSMUSG00000026960	Arl6ip6	2310057C01Rik|2610529A11Rik|Aip-6	ADP-ribosylation factor-like 6 interacting protein 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-77797788-2	chr18	77797688	77797888	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013831, intron 1 of 14)	intron (NM_013831, intron 1 of 14)	-1398.0	NR_152167	619308.0	Mm.490456	NM_001033812		F830208F22Rik	-	RIKEN cDNA F830208F22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70560300-4	chr8	70560187	70560387	+	978.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007924, intron 1 of 11)	intron (NM_007924, intron 1 of 11)	20612.0	NM_007924	13716.0	Mm.271973	NM_007924	ENSMUSG00000070002	Ell	Ell1|Men	elongation factor RNA polymerase II	protein-coding	3.76599964914292	4.2245458986329	3.39523202646189	4.88748851544726	4.88430092075828	4.32130754955965	4.9391357431931	4.17796358603929	0.558480657053982	0.218005423774829	0.708842567601735
Merged-chr9-10324886-4	chr9	10324782	10324982	+	849.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170787, intron 3 of 24)	intron (NM_001170787, intron 3 of 24)	430451.0	NR_105745	102466147.0		NR_105745	ENSMUSG00000098408	Mir6237	Gm27411|mmu-mir-6237	microRNA 6237	ncRNA	-0.464468843188515	-0.45335639950547	-0.457010031710894	-0.459820291506175	-0.0946780616856915	-0.261679642646375	0.104597383978749	-0.459329889557613	3.46397710159803	0.170199599387179	1
Merged-chr14-66186751-4	chr14	66186647	66186847	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 5 of 30)	intron (NM_001162366, intron 5 of 30)	27077.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-20896443-4	chr18	20896339	20896539	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029491)	promoter-TSS (NM_029491)	-361.0	NM_177038	75964.0	Mm.273769	NM_029491	ENSMUSG00000033382	Trappc8	5033403J15Rik|AI845423|D030074E01Rik|Trs85|mKIAA1012	trafficking protein particle complex 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-20546212-4	chr14	20546110	20546310	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033571)	promoter-TSS (NR_033571)	-83.0	NR_033571	75602.0	Mm.437061	NR_033571	ENSMUSG00000084925	1810062O18Rik	-	RIKEN cDNA 1810062O18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-43548859-2	chr17	43548759	43548959	+	834.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5220.0	NM_001254953	100043332.0	Mm.17626	NM_001254953	ENSMUSG00000096140	Ankrd66	AU041848|D730048J04Rik|Gm4368	ankyrin repeat domain 66	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95106252-2	chr3	95106152	95106352	+	974.9166869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001293707, intron 1 of 14)	intron (NM_001293707, intron 1 of 14)	678.0	NM_008847	18720.0	Mm.296409	NM_008847	ENSMUSG00000028126	Pip5k1a	PI4P5K-I[a]|PIP5K1-alpha|PIP5KIalpha|Pipk5a	phosphatidylinositol-4-phosphate 5-kinase, type 1 alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4375254-3	chr16	4375085	4375285	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009624, intron 2 of 10)	intron (NM_009624, intron 2 of 10)	45313.0	NM_001291910	11515.0	Mm.439750	NM_009624	ENSMUSG00000005580	Adcy9	AC9|ACtp10|AW125421|D16Wsu65e|mKIAA0520	adenylate cyclase 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-43113896-2	chr15	43113796	43113996	+	547.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357956, intron 2 of 5)	intron (NM_001357956, intron 2 of 5)	56922.0	NM_001357957	239405.0	Mm.193274	NM_172815	ENSMUSG00000051920	Rspo2	2610028F08Rik|AA673245|D430027K22|ftls	R-spondin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171408472-2	chr1	171408372	171408572	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001005508, exon 12 of 12)	exon (NM_001005508, exon 12 of 12)	-2841.0	NM_001305678	22278.0	Mm.8	NM_009480	ENSMUSG00000026641	Usf1	bHLHb11	upstream transcription factor 1	protein-coding	1.19234512794208	1.29777314496658	0.512188137735091	0.504695173453217	1.20605697161858	0.738604921899184	0.712465091157524	0.506008471227725	-0.544459009015798	0.743144115496284	1
Merged-chr11-100760074-4	chr11	100759982	100760182	+	998.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081194)	promoter-TSS (NM_001081194)	-304.0	NM_001081194	380728.0	Mm.297539	NM_001081194	ENSMUSG00000035355	Kcnh4	BEC2	potassium voltage-gated channel, subfamily H (eag-related), member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-45045496-3	chr10	45045408	45045608	+	625.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21706.0	NM_011156	19072.0	Mm.10281	NM_011156	ENSMUSG00000019849	Prep	AI047692|AI450383|D10Wsu136e|PEP|Pop	prolyl endopeptidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-136978524-2	chr7	136978431	136978631	+	597.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008598, intron 2 of 4)	intron (NM_008598, intron 2 of 4)	83920.0	NM_008598	17314.0	Mm.440219	NM_008598	ENSMUSG00000054612	Mgmt	AGT|AI267024|Agat	O-6-methylguanine-DNA methyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-21853569-4	chr14	21853462	21853662	+	965.525024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176925, intron 2 of 2)	intron (NM_176925, intron 2 of 2)	-4652.0	NM_026965	69156.0	Mm.11827	NM_026965	ENSMUSG00000021773	Comtd1	1810030M08Rik|MT773	catechol-O-methyltransferase domain containing 1	protein-coding	2.8327842183303	1.81938633181543	1.7513404518936	3.60182595584161	3.59634294123165	1.83417284375589	3.67454417293298	2.70849322620413	0.677190850684057	0.422877984695169	0.900322118218157
Merged-chr1-138186950-3	chr1	138186847	138187047	+	723.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11642.0	NM_001268286	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-119294791-2	chr2	119294691	119294891	+	619.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172269, intron 4 of 4)	intron (NM_172269, intron 4 of 4)	6049.0	NM_172269	228545.0	Mm.294761	NM_172269	ENSMUSG00000034216	Vps18	9930024E13Rik	VPS18 CORVET/HOPS core subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180433146-2	chr1	180433046	180433246	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001081227, exon 4 of 4)	3' UTR (NM_001081227, exon 4 of 4)	50358.0	NM_001081227	381310.0	Mm.44791	NM_001081227	ENSMUSG00000053963	Stum	6330403A02Rik|Gm10001|R75555	mechanosensory transduction mediator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3513018-3	chr4	3512914	3513114	+	827.111145	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24076.0	NR_037306	100499523.0		NR_037306	ENSMUSG00000094253	Mir3471-2	mmu-mir-3471-2	microRNA 3471-2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-69921117-2	chr8	69921013	69921213	+	866.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286450, intron 3 of 12)	intron (NM_001286450, intron 3 of 12)	-18555.0	NM_023312	67184.0	Mm.21162	NM_023312	ENSMUSG00000036199	Ndufa13	2700054G14Rik|AU022060|CDA016|CGI-39|GRIM-19|Grim19	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 13	protein-coding	-0.324602071114597	-0.778475245042255	-0.33360137421374	-0.78384742906004	-0.787139562736673	-0.777299700783557	-0.780842354194113	-0.783439682930647	-3.09252491007168	0.294506589172968	1
Merged-chr9-57433954-4	chr9	57433856	57434056	+	696.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152145, intron 3 of 6)	intron (NR_152145, intron 3 of 6)	5780.0	NM_001357913	66812.0	Mm.250508	NM_176831	ENSMUSG00000063849	Ppcdc	1810057I13Rik|8430432M10Rik	phosphopantothenoylcysteine decarboxylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-34511616-3	chr6	34511574	34511774	+	917.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35318.0	NM_007563	12183.0	Mm.282863	NM_007563	ENSMUSG00000038871	Bpgm	AI323730|AL022789|C86192	2,3-bisphosphoglycerate mutase	protein-coding	-0.0200414738467487	0.0732242744368091	0.0429563996468332	-0.252903522216713	-0.256746986687143	-0.0686953014922008	-0.0876539339508851	-0.252426078307671	-1.48432727528553	0.503331447384151	1
Merged-chr13-94709840-3	chr13	94709718	94709918	+	804.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-79125.0	NM_009321	21371.0	Mm.379025	NM_009321	ENSMUSG00000042043	Tbca	Tbca13	tubulin cofactor A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-62310986-2	chr15	62310886	62311086	+	823.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-91535.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-98770612-3	chr7	98770530	98770730	+	636.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER21B|LTR|ERV1	-64482.0	NM_001285794	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	0.990984528728578	2.32593212576654	1.07746080521307	2.36804327813248	0.999366530011968	1.12567149456978	1.47379226616473	0.806468162428258	-2.32591799018731	0.0667176718228777	0.387453352628696
Merged-chr12-85964683-4	chr12	85964594	85964794	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347395, intron 29 of 32)	intron (NM_001347395, intron 29 of 32)	114347.0	NM_009368	21809.0	Mm.3992	NM_009368	ENSMUSG00000021253	Tgfb3	TGF-beta-3|Tgfb-3	transforming growth factor, beta 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34947752-2	chr17	34947652	34947852	+	994.416626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	3256.0	NR_028527	100217427.0		NR_028527	ENSMUSG00000093009	Snord52	MBII-297	small nucleolar RNA, C/D box 52	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-117900832-4	chr6	117900744	117900944	+	948.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166432, intron 1 of 3)	intron (NM_001166432, intron 1 of 3)	504.0	NM_001166432	98758.0	Mm.422979	NM_133834	ENSMUSG00000042079	Hnrnpf	4833420I20Rik|AA407306|Hnrpf	heterogeneous nuclear ribonucleoprotein F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-40141127-4	chr10	40141038	40141238	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 1 of 5)	intron (NM_001114332, intron 1 of 5)	1116.0	NM_028247	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-64755378-2	chr17	64755278	64755478	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_008549)	TTS (NM_008549)	-11733.0	NR_105051	101202683.0	Mm.393309	NR_105051		Dreh	-	down-regulated in hepatocellular carcinoma	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-115485480-3	chr9	115485380	115485580	+	917.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	103661.0	NR_130329	100316675.0		NR_130329	ENSMUSG00000080409	Mir467h	Mirn467h|mmu-mir-467h	microRNA 467h	ncRNA	4.62447443495175	4.55159928763263	4.95991635901183	3.70738492770524	1.37671556336057	2.23424546695586	2.72229155474286	2.26425483911613	-3.62050202517095	2.51595758805738e-08	2.63254004141097e-06
Merged-chr18-35652696-3	chr18	35652592	35652792	+	808.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001270646, exon 1 of 1)	exon (NM_001270646, exon 1 of 1)	2507.0	NM_001270646	381148.0	Mm.297784	NM_001270646	ENSMUSG00000073600	Prob1	Gm1614	proline rich basic protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-89357654-2	chr15	89357554	89357754	+	616.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001115132, intron 1 of 19)	B3A|SINE|B2	1935.0	NM_001271601	52683.0	Mm.143167	NM_001115132	ENSMUSG00000008690	Ncaph2	-	non-SMC condensin II complex, subunit H2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4458166-1	chr16	4458066	4458266	+	550.0	f0_balb.idr	Intergenic	L1MB7|LINE|L1	-37668.0	NM_009624	11515.0	Mm.439750	NM_009624	ENSMUSG00000005580	Adcy9	AC9|ACtp10|AW125421|D16Wsu65e|mKIAA0520	adenylate cyclase 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-104122726-4	chr2	104122612	104122812	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026634)	promoter-TSS (NM_026634)	-57.0	NM_026634	68243.0	Mm.158191	NM_026634	ENSMUSG00000032671	A930018P22Rik	-	RIKEN cDNA A930018P22 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-20133876-4	chr13	20133778	20133978	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	43371.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-103945897-4	chr14	103945812	103946012	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1E2|LTR|ERVL-MaLR	81230.0	NR_045953	73877.0	Mm.399172	NR_045953	ENSMUSG00000115727	4930432J09Rik	-	RIKEN cDNA 4930432J09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-143830157-4	chr7	143830073	143830273	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_007856, exon 2 of 9)	5' UTR (NM_007856, exon 2 of 9)	7006.0	NM_007856	13360.0	Mm.249342	NM_007856	ENSMUSG00000058454	Dhcr7	AA409147	7-dehydrocholesterol reductase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-52833996-4	chr5	52833894	52834094	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024213)	promoter-TSS (NM_024213)	-141.0	NM_024213	52206.0	Mm.272568	NM_024213	ENSMUSG00000029176	Anapc4	2610306D21Rik|APC4|D5Ertd249e	anaphase promoting complex subunit 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-95724015-2	chr16	95723915	95724115	+	678.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21608.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-25180649-4	chr2	25180533	25180733	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025980)	promoter-TSS (NM_025980)	-125.0	NM_025980	67122.0	Mm.46539	NM_025980	ENSMUSG00000078202	Nrarp	2700054M22Rik	Notch-regulated ankyrin repeat protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27852500-2	chr17	27852400	27852600	+	822.875	f1_balb.idr|f1_c57bl6.idr	TTS (NM_011432)	TTS (NM_011432)	-4007.0	NM_001080769	224648.0	Mm.291291	NM_001080769	ENSMUSG00000039512	Uhrf1bp1	1110020K19Rik|AA408674|F830021D11Rik|mKIAA4127	UHRF1 (ICBP90) binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-37376399-3	chr10	37376294	37376494	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-237468.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-59033656-4	chr17	59033566	59033766	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20344.0	NM_026497	67993.0	Mm.36507	NM_026497	ENSMUSG00000024228	Nudt12	0610016O18Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-145939996-2	chr3	145939896	145940096	+	801.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_151445, intron 3 of 3)	intron (NR_151445, intron 3 of 3)	1982.0	NR_151446	66421.0	Mm.25137	NM_025555	ENSMUSG00000036873	2410004B18Rik	4930572C24Rik	RIKEN cDNA 2410004B18 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-93819843-2	chr16	93819744	93819944	+	675.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C|LTR|ERVK	-12277.0	NM_001045529	338467.0	Mm.287329	NM_001045529	ENSMUSG00000039456	Morc3	1110051N18Rik|AI452146|BF318192|D16Jhu32e|NXP2|Zcwcc3	microrchidia 3	protein-coding	1.11630584066836	2.94484409655493	1.48827734265564	2.49399940917089	1.12514771639568	2.46111796472507	2.24154275492234	3.16347154168817	0.442546276246514	0.680942364348031	0.995849157416831
Merged-chr9-56113471-2	chr9	56113371	56113571	+	665.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011193, intron 1 of 14)	intron (NM_011193, intron 1 of 14)	23495.0	NM_011193	19200.0	Mm.2534	NM_011193	ENSMUSG00000032322	Pstpip1	CD2BP1|def-2	proline-serine-threonine phosphatase-interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118660216-7	chr9	118660241	118660441	+	898.366699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 6 of 27)	intron (NM_133721, intron 6 of 27)	-51351.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0.270886599474563	0.298920039214695	1.14246472590286	0.282784470629754	0.272669577220564	0.30094824928968	1.05611921359137	1.00225006798087	0.71127966539852	0.720040152529267	1
Merged-chr1-16688823-4	chr1	16688711	16688911	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159711, intron 1 of 4)	intron (NM_001159711, intron 1 of 4)	355.0	NM_001159711	17087.0	Mm.116844	NM_016923	ENSMUSG00000025779	Ly96	ESOP-1|MD-2|MD2	lymphocyte antigen 96	protein-coding	2.59446099048314	3.26457560112041	2.945068809453	3.24008497063402	2.73091275987466	4.11458226090775	2.71394607600403	3.3356446241021	0.532618221081091	0.414474665567007	0.896442802092227
Merged-chr7-30184095-4	chr7	30183988	30184188	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009944)	promoter-TSS (NM_009944)	-83.0	NM_009944	12865.0	Mm.423030	NM_009944	ENSMUSG00000074218	Cox7a1	COX7A|COX7AH|COX7AM	cytochrome c oxidase subunit VIIa 1	protein-coding	5.6932216102452	5.34864933621026	5.67605368015424	5.99578897136976	6.06883769565576	5.85003837340972	5.99236349089074	6.34656132015984	0.41852831797962	0.0908795649012674	0.465931135991656
Merged-chr10-70213866-4	chr10	70213789	70213989	+	962.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304739, intron 1 of 2)	intron (NM_001304739, intron 1 of 2)	9225.0	NM_001304739	69563.0	Mm.64672	NM_001304739	ENSMUSG00000019933	Mrln	2310015B20Rik|Linc-RAM|Mln	myoregulin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-168593179-3	chr2	168593078	168593278	+	739.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291169, intron 1 of 10)	intron (NM_001291169, intron 1 of 10)	-2813.0	NM_001136073	18019.0	Mm.116802	NM_010899	ENSMUSG00000027544	Nfatc2	AI607462|NF-ATc2|NF-ATp|NFAT1|NFAT1-D|Nfatp	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2	protein-coding	-0.104440085364173	-0.723033025640621	-0.552001406464695	-0.728591409759252	-0.588718547761112	-0.722323666945487	-0.725482249021019	-0.728169550425053	-2.25822961830747	0.411024553396268	1
Merged-chr15-60824101-4	chr15	60824022	60824222	+	888.1875	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_030696, exon 1 of 3)	non-coding (NR_030696, exon 1 of 3)	958.0	NM_001162926	399603.0	Mm.411968	NM_207269	ENSMUSG00000072568	Fam84b	BF642811|D330050I23Rik	family with sequence similarity 84, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135877606-2	chr4	135877529	135877729	+	608.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TTTG)n|Simple_repeat|Simple_repeat	-3783.0	NM_026383	52830.0	Mm.29159	NM_026383	ENSMUSG00000028675	Pnrc2	0610011E17Rik|D4Bwg0593e	proline-rich nuclear receptor coactivator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-12277896-2	chr12	12277796	12277996	+	646.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029758, intron 2 of 12)	intron (NM_029758, intron 2 of 12)	15757.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-84347592-2	chr17	84347492	84347692	+	680.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183021, intron 26 of 37)	MTD|LTR|ERVL-MaLR	118616.0	NM_183021	240174.0	Mm.246767	NM_177826	ENSMUSG00000024251	Thada	6530405K19|A930021O22|AU019899|BC052885|GITA	thyroid adenoma associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-103173601-3	chr11	103173507	103173707	+	646.899963	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019679, intron 1 of 26)	intron (NM_019679, intron 1 of 26)	2469.0	NM_019679	57778.0	Mm.138913	NM_019679	ENSMUSG00000055805	Fmnl1	8030453N10Rik|AI553564|Fmnl|Fnrl|Frls	formin-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-44619146-4	chr15	44619056	44619256	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019480)	promoter-TSS (NM_019480)	-71.0	NM_001357690	55960.0	Mm.287896	NM_019480	ENSMUSG00000022339	Ebag9	AI835379|Rcas1	estrogen receptor-binding fragment-associated gene 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-70239346-3	chr9	70239241	70239441	+	969.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181072, intron 1 of 27)	intron (NM_181072, intron 1 of 27)	31991.0	NM_181072	71602.0	Mm.249311	NM_181072	ENSMUSG00000032220	Myo1e	2310020N23Rik|9130023P14Rik|AA407778|myosin-1e|myr 3	myosin IE	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-36747957-4	chr16	36747859	36748059	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37003.0	NM_001145899	57738.0	Mm.281804	NM_021301	ENSMUSG00000022899	Slc15a2	8430408C16Rik|C78862|Pept2	solute carrier family 15 (H+/peptide transporter), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-178402683-2	chr1	178402583	178402783	+	842.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-3335.0	NM_026626	68226.0	Mm.252132	NM_026626	ENSMUSG00000026495	Efcab2	1700073K01Rik|D830011E08Rik	EF-hand calcium binding domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-22124470-3	chr16	22124394	22124594	+	992.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183029, intron 2 of 15)	intron (NM_183029, intron 2 of 15)	38805.0	NM_183029	319765.0	Mm.489442	NM_183029	ENSMUSG00000033581	Igf2bp2	C330012H03Rik|IMP-2|Imp2|Neilsen	insulin-like growth factor 2 mRNA binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-24785995-3	chr13	24785841	24786041	+	901.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15716.0	NM_024473	79555.0	Mm.266668	NM_024473	ENSMUSG00000019132	BC005537	8030460C05Rik|C78201	cDNA sequence BC005537	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-119838103-4	chr13	119837982	119838182	+	877.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7865.0	NM_001001449	380878.0	Mm.327311	NM_001001449	ENSMUSG00000094237	AF067063	-	cDNA sequence AF067063	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-58211574-4	chr15	58211478	58211678	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026346, intron 1 of 8)	intron (NM_026346, intron 1 of 8)	3314.0	NM_026346	67731.0	Mm.25683	NM_026346	ENSMUSG00000022358	Fbxo32	4833442G10Rik|AI430017|ATROGIN1|Gm20361|MAFbx	F-box protein 32	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-142751789-2	chr5	142751689	142751889	+	759.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001122730, intron 15 of 27)	intron (NM_001122730, intron 15 of 27)	49688.0	NM_146257	243328.0	Mm.125942	NM_146257	ENSMUSG00000050822	Slc29a4	ENT4|mPMAT	solute carrier family 29 (nucleoside transporters), member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5645985-2	chr19	5645885	5646085	+	612.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009045, intron 10 of 10)	ID_B1|SINE|B4	8495.0	NM_009045	19697.0	Mm.249966	NM_009045	ENSMUSG00000024927	Rela	p65	v-rel reticuloendotheliosis viral oncogene homolog A (avian)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-82974431-4	chr10	82974306	82974506	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1K|LTR|ERVL-MaLR	-11091.0	NM_021439	58250.0	Mm.360747	NM_021439	ENSMUSG00000034612	Chst11	1110020P09Rik|C4ST|C4ST-1|C4ST1|C4s	carbohydrate sulfotransferase 11	protein-coding	1.23584491919258	1.39895335381366	2.08031672505082	2.95836961737406	2.45606614850735	2.65622712074129	3.54486438885316	3.49152267906353	1.89541071157907	0.0348914579592347	0.264257517518095
Merged-chr8-25107687-2	chr8	25107587	25107787	+	657.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_155282, intron 1 of 1)	intron (NR_155282, intron 1 of 1)	5508.0	NR_155282	74744.0	Mm.117802	NR_155282		5830408C22Rik	2700026D01Rik	RIKEN cDNA 5830408C22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-157500592-4	chr2	157500487	157500687	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59491.0	NM_001291129	18111.0	Mm.34330	NM_010923	ENSMUSG00000067786	Nnat	5730414I02Rik|AW107673|Peg5	neuronatin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-116491992-2	chr7	116491892	116492092	+	939.599976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12377.0	NM_001130479	53322.0	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-75642455-4	chr15	75642342	75642542	+	939.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	25758.0	NM_011759	22701.0	Mm.87210	NM_011759	ENSMUSG00000047003	Zfp41	CTfin92|Zfp-41	zinc finger protein 41	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-81136813-4	chr13	81136738	81136938	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 87 of 89)	intron (NM_054053, intron 87 of 89)	172764.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-137730294-4	chr4	137730203	137730403	+	885.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001331215)	TTS (NM_001331215)	5842.0	NR_138592	110351.0	Mm.180763	NM_029563	ENSMUSG00000041351	Rap1gap	1300019I11Rik|2310004O14Rik|AI427470|ARPP-90|Gap|Rap1GAP1|Rap1ga1	Rap1 GTPase-activating protein	protein-coding	2.72378384528897	2.61476596279139	2.15307151582969	3.17610372062842	1.85446898806127	2.24725516532718	1.34502612414678	1.94952073997565	-1.92068296706747	0.0297563524139465	0.235574198816015
Merged-chr6-97433552-2	chr6	97433365	97433565	+	874.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	MTE2b|LTR|ERVL-MaLR	25821.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127554138-2	chr10	127554018	127554218	+	815.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 58 of 88)	intron (NM_008512, intron 58 of 88)	-19559.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	-0.039404600519146	-0.381815631326858	0.153642541043674	-0.38828647916175	-0.136088176806746	-0.380988442934182	-0.384669265680244	-0.387796030615726	-1.81532921590481	0.479897089659547	1
Merged-chr6-124723251-2	chr6	124723151	124723351	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077705, intron 11 of 15)	B1_Mur1|SINE|Alu	-4861.0	NR_029792	723944.0		NR_029792	ENSMUSG00000065462	Mir200c	Mirn200c|mir-200c	microRNA 200c	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-38093284-3	chr16	38093212	38093412	+	659.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347232, intron 1 of 11)	intron (NM_001347232, intron 1 of 11)	-4052.0	NR_033221	414072.0	Mm.483602	NR_033221		BC031361	-	cDNA sequence BC031361	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-137995553-4	chr4	137995462	137995662	+	996.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001256195, intron 2 of 34)	intron (NM_001256195, intron 2 of 34)	2106.0	NM_172703	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	5.03341626540446	5.04891609716028	5.17370604500305	5.30681712047378	6.28091406239793	6.3069918872166	6.28491625481121	6.72825316243145	1.41181214427146	1.1634642795791e-08	1.35966666490812e-06
Merged-chr14-25835266-2	chr14	25835166	25835366	+	574.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Arthur1|DNA|hAT-Tip100	-6889.0	NM_013469	11744.0	Mm.294083	NM_013469	ENSMUSG00000021866	Anxa11	A830099O17Rik|Anx11	annexin A11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-128376244-2	chr7	128376144	128376344	+	573.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026418, intron 4 of 4)	intron (NM_026418, intron 4 of 4)	41928.0	NM_026418	67865.0	Mm.18635	NM_026418	ENSMUSG00000030844	Rgs10	2310010N19Rik	regulator of G-protein signalling 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117893340-4	chr10	117893246	117893446	+	992.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32113.0	NR_045342	71067.0	Mm.410793	NR_045342	ENSMUSG00000112500	4933411E08Rik	-	RIKEN cDNA 4933411E08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-108286404-3	chr3	108286303	108286503	+	986.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019972, intron 1 of 19)	intron (NM_019972, intron 1 of 19)	2339.0	NM_019972	20661.0	Mm.157119	NM_019972	ENSMUSG00000068747	Sort1	2900053A11Rik|AI852375|Ntr3|Ntsr3	sortilin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-58280686-4	chr9	58280576	58280776	+	973.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR30|LTR|ERV1	27512.0	NM_026942	69106.0	Mm.216502	NM_026942	ENSMUSG00000032333	Stoml1	1810015E19Rik|AI847431|SLP1|STORP|UNC24|WPB72	stomatin-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-120507668-2	chr5	120507568	120507768	+	989.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3524.0	NM_001177595	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-23743756-2	chr17	23743656	23743856	+	751.333374	f1_balb.idr|f1_c57bl6.idr	exon (NM_028416, exon 4 of 10)	exon (NM_028416, exon 4 of 10)	2073.0	NM_028416	73016.0	Mm.221319	NM_028416	ENSMUSG00000040680	Kremen2	2900054E04Rik|Krm2	kringle containing transmembrane protein 2	protein-coding	-0.0753823037026756	-0.409693184805165	-0.41308504625883	-0.41568727632843	-0.0675147503661257	-0.408925648779647	-0.412338791847952	-0.017607597276746	1.12782992069305	0.663699000646157	1
Merged-chr2-49764731-2	chr2	49764631	49764831	+	927.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008449, intron 25 of 25)	intron (NM_008449, intron 25 of 25)	-22955.0	NM_027990	71897.0	Mm.41381	NM_027990	ENSMUSG00000026765	Lypd6b	2310010M24Rik|AW049525	LY6/PLAUR domain containing 6B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167363823-2	chr2	167363723	167363923	+	626.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14645.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-26675931-3	chr14	26675828	26676028	+	996.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6082.0	NM_178668	211948.0	Mm.290758	NM_178668	ENSMUSG00000043702	Pde12	2'-PDE|E430028B21Rik	phosphodiesterase 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-38691388-4	chr6	38691286	38691486	+	773.916626	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28317.0	NM_001101507	665180.0	Mm.349066	NM_001101507	ENSMUSG00000079598	Clec2l	AI414054|AW122724|Gm1064	C-type lectin domain family 2, member L	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-60777407-4	chr11	60777321	60777521	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175491)	promoter-TSS (NM_175491)	-56.0	NM_009410	21975.0	Mm.10708	NM_009410	ENSMUSG00000002814	Top3a	-	topoisomerase (DNA) III alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32577291-2	chr2	32577191	32577391	+	944.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198191, intron 2 of 9)	intron (NM_198191, intron 2 of 9)	1573.0	NM_198191	227733.0	Mm.78923	NM_198191	ENSMUSG00000046854	Pip5kl1	BC028795	phosphatidylinositol-4-phosphate 5-kinase-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-38350085-2	chr6	38349985	38350185	+	637.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028864, intron 1 of 8)	intron (NM_028864, intron 1 of 8)	4518.0	NM_001347122	78781.0	Mm.25243	NM_028421	ENSMUSG00000029826	Zc3hav1	1200014N16Rik|2900058M19Rik|9130009D18Rik|9830115L13Rik|ARTD13|D6Bwg1452e|ZAP	zinc finger CCCH type, antiviral 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191227826-1	chr1	191227726	191227926	+	541.0	f0_balb.idr	Intergenic	Intergenic	3372.0	NR_151547	100504360.0	Mm.16927	NM_001033188		D730003I15Rik	AU020850	RIKEN cDNA D730003I15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-126259668-4	chr4	126259574	126259774	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2731.0	NM_013718	27096.0	Mm.8392	NM_013718	ENSMUSG00000028847	Trappc3	1110058K12Rik|AI835942|AU019197|Bet3	trafficking protein particle complex 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-11174835-4	chr16	11174777	11174977	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027502, intron 1 of 22)	intron (NR_027502, intron 1 of 22)	1516.0	NR_027502	106205.0	Mm.226860	NM_145931	ENSMUSG00000037965	Zc3h7a	A430104C18Rik|AI447294|AW556219|HSPC055|Zc3h7|Zc3hdc7	zinc finger CCCH type containing 7 A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-45377561-3	chr16	45377457	45377657	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31496.0	NM_001358443	17470.0	Mm.245851	NM_010818	ENSMUSG00000022661	Cd200	Mox2|OX2	CD200 antigen	protein-coding	2.43301500295193	2.6066177016598	2.33250794955885	2.25751532011085	4.01513963107955	3.17701348272794	4.05701844009356	3.84177289444552	2.37921462371267	0.00014244651596727	0.00410834927542142
Merged-chr2-28542970-2	chr2	28542870	28543070	+	580.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145836, intron 4 of 17)	intron (NM_001145836, intron 4 of 17)	9506.0	NM_001145836	19730.0	Mm.5236	NM_009058	ENSMUSG00000026821	Ralgds	Gnds|Rgds|mKIAA1308	ral guanine nucleotide dissociation stimulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-40276110-4	chr10	40276015	40276215	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18403.0	NM_001359492	67371.0	Mm.64104	NM_026113	ENSMUSG00000019837	Gtf3c6	2410016F19Rik|AU019813	general transcription factor IIIC, polypeptide 6, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-79984398-4	chr10	79984350	79984550	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001003949)	promoter-TSS (NM_001003949)	-190.0	NM_001003949	216157.0	Mm.29442	NM_001003949	ENSMUSG00000013858	Tmem259	AC087114.7gm2|ORF61|R32184_3|mFLJ00277	transmembrane protein 259	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-103871842-2	chr1	103871742	103871942	+	601.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-896678.0	NM_011800	23836.0	Mm.103640	NM_011800	ENSMUSG00000050840	Cdh20	Cdh7	cadherin 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-56958877-3	chr9	56958765	56958965	+	916.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178374, intron 2 of 8)	intron (NM_178374, intron 2 of 8)	7941.0	NM_178374	66069.0	Mm.220984	NM_178374	ENSMUSG00000055334	Snupn	0610031A09Rik|Rnut1|Snupn1	snurportin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150508865-3	chr4	150508769	150508969	+	953.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001085492, exon 9 of 23)	exon (NM_001085492, exon 9 of 23)	143305.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-17406588-3	chr10	17406526	17406726	+	697.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TTTG)n|Simple_repeat|Simple_repeat	-310844.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	1.50464110695322	1.05960253070076	1.27501790222242	1.01922468410601	2.32673660259231	1.85906318923582	2.03337496382772	2.15459121479351	2.97928737018385	0.0120823882377405	0.124756835923824
Merged-chr5-125388639-3	chr5	125388597	125388797	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019639, intron 1 of 1)	PB1D9|SINE|Alu	1320.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-43137997-4	chr17	43137898	43138098	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20293.0	NR_045155	545207.0	Mm.329050	NR_045153		E130008D07Rik	-	RIKEN cDNA E130008D07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-106034472-4	chr12	106034366	106034566	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029843, intron 1 of 13)	intron (NM_001029843, intron 1 of 13)	24203.0	NM_001029843	22367.0	Mm.2981	NM_011705	ENSMUSG00000021115	Vrk1	51PK	vaccinia related kinase 1	protein-coding	-0.914587585352826	-1.14968844836017	-1.16012564310979	-1.16869906563582	-0.801023986531728	-1.14742666471813	-1.15776289099527	-1.16716442710272	0.46649237519341	0.890119923761052	1
Merged-chr12-102710820-3	chr12	102710705	102710905	+	800.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-5936.0	NM_172584	217837.0	Mm.482192	NM_172584	ENSMUSG00000057963	Itpk1	BC031182	inositol 1,3,4-triphosphate 5/6 kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-13504114-1	chr8	13504014	13504214	+	875.6666869999999	f0_c57.idr	Intergenic	Intergenic	-9579.0	NM_019521	14456.0	Mm.3982	NM_019521	ENSMUSG00000031451	Gas6	Gas-6	growth arrest specific 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-22307727-4	chr9	22307608	22307808	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145612)	promoter-TSS (NM_145612)	-70.0	NM_145612	235050.0	Mm.306038	NM_145612	ENSMUSG00000066829	Zfp810	BC005471	zinc finger protein 810	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-99440066-3	chr6	99439970	99440170	+	838.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347345, intron 1 of 19)	intron (NM_001347345, intron 1 of 19)	-4725.0	NM_053202	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-100431898-4	chr3	100431801	100432001	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040543, intron 2 of 2)	intron (NR_040543, intron 2 of 2)	5496.0	NR_040543	73806.0	Mm.396549	NR_040543	ENSMUSG00000086923	4930406D18Rik	-	RIKEN cDNA 4930406D18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-117621291-2	chr2	117621191	117621391	+	559.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	191511.0	NR_126427	100504728.0	Mm.413174	NR_126427		Gm13985	-	predicted gene 13985	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27749981-4	chr2	27749896	27750096	+	792.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290481, intron 5 of 9)	intron (NM_001290481, intron 5 of 9)	39413.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-18048427-4	chr10	18048328	18048528	+	930.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16A|LTR|ERVL	-7512.0	NM_009048	19707.0	Mm.4479	NM_009048	ENSMUSG00000019854	Reps1	BB161292	RalBP1 associated Eps domain containing protein	protein-coding	2.77332004296103	3.69596092564693	3.0211515465452	3.04161939803806	3.84265482362334	3.64387811820175	4.03673634435051	2.54552377371197	0.712413087730847	0.242026787993845	0.739349184581178
Merged-chr16-91538205-4	chr16	91538119	91538319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8875.0	NM_008338	15980.0	Mm.249364	NM_008338	ENSMUSG00000022965	Ifngr2	Ifgr2|Ifgt	interferon gamma receptor 2	protein-coding	5.03792859745297	5.77139136160195	4.14758735954958	5.06462469200014	4.59847173556613	4.73978610751511	3.4758190902397	4.50795360781146	-0.861633118919497	0.0428149630763908	0.296475910152291
Merged-chr12-85667174-2	chr12	85667074	85667274	+	550.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-19546.0	NM_016767	53314.0	Mm.6672	NM_016767	ENSMUSG00000034266	Batf	B-ATF|SFA-2	basic leucine zipper transcription factor, ATF-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-24591376-2	chr5	24591276	24591476	+	604.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_030423)	promoter-TSS (NR_030423)	-738.0	NR_030423	735264.0		NR_030423	ENSMUSG00000076387	Mir671	Mirn671|mmu-mir-671	microRNA 671	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46008359-2	chr19	46008259	46008459	+	903.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_152221, intron 1 of 1)	intron (NR_152221, intron 1 of 1)	4881.0	NM_176785	20170.0	Mm.101110	NM_176785	ENSMUSG00000074811	Hps6	5330434M19Rik|BLOC2|ru	HPS6, biogenesis of lysosomal organelles complex 2 subunit 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-90108499-4	chr9	90108393	90108593	+	998.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039147, intron 2 of 12)	PB1|SINE|Alu	6327.0	NM_001039147	21761.0	Mm.426209	NM_024431	ENSMUSG00000062270	Morf4l1	MORFRG15|MRG15|TEG-189|Tex189|mKIAA4002	mortality factor 4 like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-67504158-4	chr18	67504057	67504257	+	938.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194355, intron 8 of 14)	intron (NM_194355, intron 8 of 14)	39308.0	NM_144867	225655.0	Mm.221420	NM_144867	ENSMUSG00000024530	Prelid3a	A230074A19Rik|BC019561|Slmo1	PRELI domain containing 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-82513301-4	chr4	82513243	82513443	+	973.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_137202, intron 1 of 1)	CpG	5354.0	NR_137202	102635783.0	Mm.41666	NR_137202		Gm11266	-	predicted gene 11266	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83541528-2	chr11	83541428	83541628	+	872.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11010.0	NM_013653	20304.0	Mm.284248	NM_013653	ENSMUSG00000035042	Ccl5	MuRantes|RANTES|SISd|Scya5|TCP228	chemokine (C-C motif) ligand 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101374954-1	chr7	101374854	101375054	+	615.0	f1_c57bl6.idr	intron (NM_001040111, intron 3 of 33)	B1_Mus1|SINE|Alu	-3168.0	NM_001040112	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	1.41768624457202	2.58634496695752	1.5561186407059	1.89700544304328	0.858021510161251	2.17233086294743	0.913472435985624	0.891291187571068	-1.6405271655293	0.200080397416728	0.683821745604712
Merged-chr4-66861902-3	chr4	66861808	66862008	+	947.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34357.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21298551-2	chr9	21298451	21298651	+	801.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110300, intron 8 of 10)	(CA)n|Simple_repeat|Simple_repeat	-7342.0	NM_009878	12581.0	Mm.29020	NM_009878	ENSMUSG00000096472	Cdkn2d	INK4d|p19|p19INK4d	cyclin dependent kinase inhibitor 2D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-114066914-4	chr7	114066759	114066959	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025846, intron 1 of 5)	intron (NM_025846, intron 1 of 5)	50922.0	NM_025846	66922.0	Mm.276572	NM_025846	ENSMUSG00000055723	Rras2	2610016H24Rik|C86394|TC21	related RAS viral (r-ras) oncogene 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-4651881-2	chr7	4651781	4651981	+	894.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172894, intron 1 of 23)	intron (NM_172894, intron 1 of 23)	7069.0	NM_172894	243819.0	Mm.258670	NM_172894	ENSMUSG00000052296	Ppp6r1	2010309P17Rik|AI836219|B430201G11Rik|D030074N20Rik|Pp6r1|Saps1|mKIAA1115	protein phosphatase 6, regulatory subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-94680950-2	chr3	94680866	94681066	+	617.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MMERGLN-int|LTR|ERV1	-12607.0	NM_019414	20342.0	Mm.225405	NM_019414	ENSMUSG00000068877	Selenbp2	AP56|Lpsb2	selenium binding protein 2	protein-coding	0.975161973116538	1.73219490064902	1.5379539444898	0.604725185377691	0.582113490852208	2.21539650736535	0.624458928724975	0.607451162616234	-0.0721683257593776	0.9629677578384	0.998431161219273
Merged-chr15-53318158-3	chr15	53318057	53318257	+	823.133362	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	28026.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27565837-4	chr17	27565740	27565940	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001002895)	promoter-TSS (NM_001002895)	-113.0	NM_001002895	106672.0	Mm.61488	NM_001002895	ENSMUSG00000062753	AI413582	AI854251|Smim29	expressed sequence AI413582	protein-coding	6.38492196737263	6.33042608082508	5.23025212816557	6.19729371950051	6.27607866577224	5.86131035089121	5.1154473803635	6.52494018003118	-0.068935150851534	0.825951058122389	0.998431161219273
Merged-chr9-31931415-2	chr9	31931315	31931515	+	907.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR12B|LTR|ERVK	-18130.0	NM_013800	12023.0	Mm.261044	NM_013800	ENSMUSG00000032033	Barx2	2310006E12Rik|Barx2b	BarH-like homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-79824391-2	chr3	79824291	79824491	+	756.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027495, intron 8 of 11)	intron (NM_027495, intron 8 of 11)	18271.0	NM_027495	70652.0	Mm.46635	NM_027495	ENSMUSG00000027956	Tmem144	1110057I03Rik|5730537D05Rik	transmembrane protein 144	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-45629131-1	chr19	45629031	45629231	+	612.0	f1_balb.idr	intron (NM_013907, intron 5 of 8)	intron (NM_013907, intron 5 of 8)	31062.0	NM_013907	30838.0	Mm.254739	NM_013907	ENSMUSG00000040913	Fbxw4	Dac|Fbw4|SHFM3|SHSF3|dactylin|dactylyn	F-box and WD-40 domain protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-34691260-4	chr13	34691159	34691359	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38336.0	NR_105041	101056149.0	Mm.421309	NR_105041	ENSMUSG00000086786	Gm15908	-	predicted gene 15908	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134792279-2	chr6	134792191	134792391	+	826.083374	f0_balb.idr|f0_c57.idr	promoter-TSS (NR_151454)	promoter-TSS (NR_151454)	-69.0	NR_151454	105242798.0	Mm.398227	NR_151454		1700055D16Rik	-	RIKEN cDNA 1700055D16 gene	ncRNA	2.99782025720067	1.28769589082996	1.25525160421336	1.994184460631	2.41667687741243	2.14439658830399	2.43688252216064	2.1358624524927	0.348106086628187	0.736313100146821	0.998431161219273
Merged-chr11-120035823-2	chr11	120035723	120035923	+	617.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001198785, intron 1 of 13)	ORR1A1|LTR|ERVL-MaLR	5958.0	NM_001198787	11302.0	Mm.6826	NM_007377	ENSMUSG00000025375	Aatk	AATYK|aatyk1|mKIAA0641	apoptosis-associated tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-54357697-3	chr3	54357592	54357792	+	724.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3415.0	NM_001198766	50706.0	Mm.236067	NM_015784	ENSMUSG00000027750	Postn	A630052E07Rik|AI747096|OSF-2|Osf2|PLF|PN	periostin, osteoblast specific factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-24129802-2	chr15	24129702	24129902	+	721.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	1093339.0	NM_001081299	320865.0	Mm.241965	NM_001081299	ENSMUSG00000040420	Cdh18	B230220E17Rik|Cdh14l|Tg(GFAP-APOE_i4)1Hol	cadherin 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167676595-2	chr2	167676495	167676695	+	794.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12320.0	NM_009883	12608.0	Mm.439656	NM_009883	ENSMUSG00000056501	Cebpb	C/EBPbeta|CRP2|IL-6DBP|LAP|LIP|NF-IL6|NF-M|Nfil6	CCAAT/enhancer binding protein (C/EBP), beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-16162815-2	chr1	16162743	16162943	+	648.5	f0_balb.idr|f1_balb.idr	Intergenic	Lx4A|LINE|L1	56961.0	NM_133832	98711.0	Mm.274376	NM_133832	ENSMUSG00000025921	Rdh10	3110069K09Rik|4921506A21Rik|AI875664|AW549993|D1Ertd762e|m366Asp	retinol dehydrogenase 10 (all-trans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-86769183-4	chr12	86769068	86769268	+	786.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34799.0	NM_001195767	627607.0	Mm.341880	NM_001195767	ENSMUSG00000059114	Lrrc74a	EG627607|Gm6772|Lrrc74	leucine rich repeat containing 74A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80067219-2	chr10	80067119	80067319	+	557.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359635, intron 12 of 31)	intron (NM_001359635, intron 12 of 31)	8220.0	NM_001359636	216161.0	Mm.262102	NM_183426	ENSMUSG00000035673	Sbno2	BC019206|F730040C21|Sno|Stno	strawberry notch 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124095360-3	chr5	124095245	124095445	+	860.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019875, intron 1 of 11)	intron (NM_019875, intron 1 of 11)	453.0	NM_019875	56325.0	Mm.254839	NM_019875	ENSMUSG00000029408	Abcb9	TAPL|mKIAA1520	ATP-binding cassette, sub-family B (MDR/TAP), member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-4335828-4	chr8	4335725	4335925	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033527, intron 2 of 5)	intron (NR_033527, intron 2 of 5)	10615.0	NR_033527	20300.0	Mm.7275	NM_009138	ENSMUSG00000023235	Ccl25	A130072A22Rik|AI852536|CKb15|Scya25|TECK	chemokine (C-C motif) ligand 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-13958162-2	chr14	13958062	13958262	+	566.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359900, intron 1 of 8)	intron (NM_001359900, intron 1 of 8)	3151.0	NM_001285780	66231.0	Mm.295875	NM_025435	ENSMUSG00000053453	Thoc7	Nif3l1bp1	THO complex 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-120381180-4	chr4	120381083	120381283	+	839.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24098.0	NM_001159630	29871.0	Mm.427014	NM_013883	ENSMUSG00000000085	Scmh1	AI315320|AI851618|Scml1|Scml3	sex comb on midleg homolog 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-101734400-2	chr13	101734300	101734500	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077495, intron 2 of 15)	intron (NM_001077495, intron 2 of 15)	33817.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-25668240-2	chr18	25668140	25668340	+	772.583313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001362322, intron 2 of 12)	intron (NM_001362322, intron 2 of 12)	11508.0	NM_001362337	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180265665-1	chr1	180265565	180265765	+	728.0	f1_c57bl6.idr	Intergenic	Intergenic	-9365.0	NM_001128605	19165.0	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-21754729-2	chr13	21754629	21754829	+	741.666687	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178183)	promoter-TSS (NM_178183)	606.0	NM_178201	319187.0		NM_178201	ENSMUSG00000095217	Hist1h2bn	-	histone cluster 1, H2bn	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5089192-2	chr19	5089092	5089292	+	549.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026553, intron 1 of 7)	intron (NM_026553, intron 1 of 7)	654.0	NM_026553	68090.0	Mm.44202	NM_026553	ENSMUSG00000024875	Yif1a	5330422J23Rik|54TM|Yif1|Yif1p	Yip1 interacting factor homolog A (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-78550809-4	chr11	78550717	78550917	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133706)	promoter-TSS (NM_133706)	-82.0	NM_133706	69071.0	Mm.29431	NM_133706	ENSMUSG00000037278	Tmem97	1810014L12Rik|AI115531|AL022956|D11Bhm182e	transmembrane protein 97	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-42953074-2	chr1	42952974	42953174	+	615.5	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_053107, exon 1 of 2)	5' UTR (NM_053107, exon 1 of 2)	202.0	NM_053107	93690.0	Mm.444976	NM_053107	ENSMUSG00000041907	Gpr45	9230112G11Rik|AW046772	G protein-coupled receptor 45	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-65957837-2	chr3	65957737	65957937	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_019937, exon 1 of 11)	exon (NM_019937, exon 1 of 11)	412.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-46168934-3	chr9	46168837	46169037	+	954.305542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027498, intron 4 of 24)	intron (NM_027498, intron 4 of 24)	-59693.0	NM_009692	11806.0	Mm.26743	NM_009692	ENSMUSG00000032083	Apoa1	Alp-1|Apoa-1|Brp-14|Ltw-1|Lvtw-1|Sep-1|Sep-2|Sep2|apo-AI|apoA-I	apolipoprotein A-I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-89827146-4	chr9	89827028	89827228	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040735, exon 1 of 6)	non-coding (NR_040735, exon 1 of 6)	609.0	NR_040735	74700.0	Mm.159306	NR_040735	ENSMUSG00000098627	4930524O08Rik	-	RIKEN cDNA 4930524O08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91192703-2	chr2	91192685	91192885	+	714.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355279, intron 2 of 9)	intron (NM_001355279, intron 2 of 9)	2250.0	NM_013839	22259.0	Mm.22690	NM_013839	ENSMUSG00000002108	Nr1h3	AU018371|LXR|RLD1|Unr1	nuclear receptor subfamily 1, group H, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124930905-4	chr6	124930799	124930999	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001170341)	promoter-TSS (NM_001170341)	-489.0	NM_145385	30853.0	Mm.29737	NM_145385	ENSMUSG00000030120	Mlf2	AI256856|AU018944|C77284	myeloid leukemia factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-33852807-2	chr6	33852707	33852907	+	816.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009148, intron 13 of 17)	L1MD|LINE|L1	-176641.0	NM_028886	74354.0	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-23581181-1	chr9	23581081	23581281	+	635.25	f0_balb.idr	Intergenic	Intergenic	358105.0	NM_028472	73230.0	Mm.335020	NM_028472	ENSMUSG00000031963	Bmper	3110056H04Rik|CV-2|Crim3|Cv2	BMP-binding endothelial regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-73545947-3	chr12	73545791	73545991	+	861.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_178715, exon 1 of 1)	exon (NM_178715, exon 1 of 1)	504.0	NM_178715	238257.0	Mm.251196	NM_178715	ENSMUSG00000034435	Tmem30b	9130011B11Rik	transmembrane protein 30B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-68196200-4	chr8	68196103	68196303	+	910.18335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-80325.0	NM_028182	72281.0	Mm.40974	NM_028182	ENSMUSG00000053886	Sh2d4a	2210402M20Rik|SH2A	SH2 domain containing 4A	protein-coding	3.51794311434313	3.78872392822111	3.41384248248918	3.31598372093328	4.4326518124724	3.23845371081932	4.08025355273475	2.76680470807034	0.419023014380901	0.462799313024984	0.921349473065336
Merged-chr5-123471029-4	chr5	123470932	123471132	+	907.30835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16B2|LTR|ERVL	11069.0	NM_029594	76399.0	Mm.75049	NM_029594	ENSMUSG00000029437	Il31	1700013B14Rik	interleukin 31	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-113447486-3	chr2	113447375	113447575	+	851.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285459, intron 2 of 16)	intron (NM_001285459, intron 2 of 16)	6411.0	NM_001285459	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-60226659-4	chr19	60226552	60226752	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358271)	promoter-TSS (NM_001358271)	49.0	NR_152391	76539.0	Mm.290183	NM_029648	ENSMUSG00000057858	Fam204a	2310065H12Rik|2610015K05Rik|D19Ertd737e	family with sequence similarity 204, member A	protein-coding	5.65103504448012	6.50714786375096	6.50967270728761	6.45538224940958	6.70610862875039	6.26701877719689	6.87515208108816	6.2877963508453	0.264091757279921	0.275780026612642	0.77982362793126
Merged-chr6-65145611-2	chr6	65145511	65145711	+	712.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019455)	promoter-TSS (NM_019455)	-881.0	NM_019455	54486.0	Mm.410688	NM_019455	ENSMUSG00000029919	Hpgds	H-PGDS|Ptgds2	hematopoietic prostaglandin D synthase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-12917978-2	chr13	12917878	12918078	+	743.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	87352.0	NM_031191	18811.0	Mm.88796	NM_031191	ENSMUSG00000079092	Prl2c2	Ghd2|MRP-1|PLF-1|Plf|Plf1	prolactin family 2, subfamily c, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-182341139-4	chr1	182341060	182341260	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175127, intron 1 of 4)	CpG	446.0	NM_175127	67948.0	Mm.30737	NM_175127	ENSMUSG00000047539	Fbxo28	4833428J17Rik|5730505P19Rik|D1Ertd578e|Fbx28|mKIAA0483	F-box protein 28	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-32686678-2	chr9	32686562	32686762	+	644.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9380.0	NM_011808	23871.0	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-142885614-2	chr2	142885514	142885714	+	793.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355123, intron 1 of 26)	MLT1J1|LTR|ERVL-MaLR	15850.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-81706330-4	chr17	81706228	81706428	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 1 of 8)	intron (NR_104580, intron 1 of 8)	32059.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-108055264-4	chr6	108055162	108055362	+	771.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9783.0	NM_001276356	74729.0	Mm.56539	NM_178391	ENSMUSG00000034639	Setmar	5830404F24Rik|Etet2	SET domain without mariner transposase fusion	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21601722-2	chr9	21601622	21601822	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	6607.0	NR_003372	666043.0	Mm.247282	NR_003372		Gm7904	EG666043	predicted gene 7904	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-21273729-4	chr14	21273633	21273833	+	927.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134079, intron 6 of 10)	MIRc|SINE|MIR	197581.0	NM_001243041	11534.0	Mm.188734	NM_134079	ENSMUSG00000039197	Adk	2310026J05Rik|5033405D03Rik|AI255373|AI987814|Ak	adenosine kinase	protein-coding	0.88192770199179	1.81021493440153	1.84936564147154	1.7906601419521	1.87489825615544	0.942210787958176	0.924301663241746	1.44922530966157	-0.873085114790283	0.5146166331291	0.947017304411256
Merged-chr12-25415383-4	chr12	25415276	25415476	+	866.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	286202.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	1.7413064574661	1.30220455209327	2.46576195189734	1.96944473635011	2.37105789927226	2.36594302337736	2.3903019449646	1.67702983106003	0.722438972365474	0.456644066323179	0.919264728457769
Merged-chr12-100841404-4	chr12	100841292	100841492	+	909.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001361020, exon 6 of 14)	exon (NM_001361020, exon 6 of 14)	58132.0	NM_001177674	238377.0	Mm.32160	NM_175493	ENSMUSG00000047415	Gpr68	BB131428|Ogr1	G protein-coupled receptor 68	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-66090250-4	chr5	66090149	66090349	+	834.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139065, intron 2 of 6)	intron (NM_139065, intron 2 of 6)	7930.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-183388949-4	chr1	183388853	183389053	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001277959)	promoter-TSS (NM_001277959)	-32.0	NM_001277959	21339.0	Mm.383556	NM_021466	ENSMUSG00000072258	Taf1a	TAFI48|mTAFI48	TATA-box binding protein associated factor, RNA polymerase I, A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3290820-2	chr12	3290720	3290920	+	661.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016676, intron 1 of 5)	intron (NM_016676, intron 1 of 5)	19149.0	NM_016676	19325.0	Mm.378993	NM_016676	ENSMUSG00000020671	Rab10	AW107754	RAB10, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-59505608-2	chr11	59505508	59505708	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_135273)	promoter-TSS (NR_135273)	-45.0	NR_135273	74476.0	Mm.440257	NR_015585	ENSMUSG00000072893	4933439C10Rik	2610028M21Rik	RIKEN cDNA 4933439C10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-100070404-2	chr5	100070304	100070504	+	964.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7558.0	NR_045993	76003.0	Mm.447060	NR_045993	ENSMUSG00000086259	Tmem150cos	5830403M04Rik	transmembrane protein 150C, opposite strand	ncRNA	0.455372653687394	1.16568541113642	0.476116820339095	1.35139469923462	0.457318117079892	1.17797323571798	0.851746595583953	0.469729855948075	-0.723672447627503	0.680294019252281	0.995506882643648
Merged-chr3-96555519-2	chr3	96555494	96555694	+	687.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_040409)	TTS (NR_040409)	-2363.0	NM_023719	56338.0	Mm.410189	NM_023719	ENSMUSG00000038393	Txnip	1200008J08Rik|AA682105|Hyplip1|THIF|Tbp-2|VDUP1	thioredoxin interacting protein	protein-coding	0.128127164063537	-0.136404990307379	-0.141925683168772	-0.146198631734286	0.25059911735787	0.729204358555744	-0.140706374040247	-0.145451282093907	2.40820321642937	0.300862604297357	1
Merged-chr9-20893574-2	chr9	20893474	20893674	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_016876)	TTS (NM_016876)	5016.0	NM_016876	53356.0	Mm.427309	NM_016876	ENSMUSG00000070319	Eif3g	44kDa|D0Jmb4|Eif3s4|TU-189B2|eIF3-p44|p44	eukaryotic translation initiation factor 3, subunit G	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-60963085-3	chr2	60962984	60963184	+	835.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_020296, exon 1 of 14)	5' UTR (NM_020296, exon 1 of 14)	120.0	NM_020296	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-54637212-4	chr12	54637095	54637295	+	839.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8817.0	NR_035439	100316682.0		NR_035439	ENSMUSG00000106344	Mir1892	Mirn1892|mir-1892|mmu-mir-1892	microRNA 1892	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-48448617-3	chr6	48448497	48448697	+	770.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_173428, exon 2 of 103)	exon (NM_173428, exon 2 of 103)	368.0	NM_173428	243369.0	Mm.25039	NM_173428	ENSMUSG00000029797	Sspo	C79529|Scospondin	SCO-spondin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114676028-3	chr11	114675927	114676127	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053273, intron 1 of 13)	intron (NM_053273, intron 1 of 13)	559.0	NM_053273	117160.0	Mm.271934	NM_053273	ENSMUSG00000034714	Ttyh2	1110001A03Rik	tweety family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-77443524-3	chr16	77443423	77443623	+	892.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015543, intron 2 of 4)	intron (NR_015543, intron 2 of 4)	114195.0	NR_015543	77994.0	Mm.394688	NR_015543	ENSMUSG00000090386	Mir99ahg	2810055G20Rik|D730043B02Rik	Mir99a and Mirlet7c-1 host gene (non-protein coding)	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70621296-2	chr8	70621198	70621398	+	814.5	f0_balb.idr|f1_balb.idr	TTS (NM_153074)	TTS (NM_153074)	4454.0	NM_153074	211228.0	Mm.132939	NM_153074	ENSMUSG00000049988	Lrrc25	Mapa	leucine rich repeat containing 25	protein-coding	2.19705336023431	1.20376143850917	2.01978645279645	1.138256504177	2.76324385486352	2.80920130470658	1.17572672014136	2.90961810566543	1.89579502572593	0.0805038488394554	0.432356839022286
Merged-chr10-119054378-2	chr10	119054278	119054478	+	697.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-3879.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-112751975-4	chr13	112751874	112752074	+	872.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48803.0	NM_008903	19012.0	Mm.291029	NM_008247	ENSMUSG00000021759	Plpp1	Hic53|Hpic53|LPP-1|LPP1|PAP-2a|PAP2-alpha|PAP2a|Ppap2a|mPAP	phospholipid phosphatase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3391078-4	chr12	3390989	3391189	+	985.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008445, intron 5 of 7)	intron (NM_008445, intron 5 of 7)	25957.0	NM_008445	16570.0	Mm.7688	NM_008445	ENSMUSG00000020668	Kif3c	mKIAA4058	kinesin family member 3C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-47431198-1	chr19	47431098	47431298	+	761.0	f1_balb.idr	intron (NM_008018, intron 1 of 14)	intron (NM_008018, intron 1 of 14)	33213.0	NM_001164717	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	-2.05752322593321	-2.15521190974092	-2.16307242109104	-2.16952927915413	-2.17938029103484	-2.15350850414045	-2.16129297361887	-2.16837350464794	-0.683654500252594	0.846597994014493	1
Merged-chr6-5160261-2	chr6	5160161	5160361	+	636.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_181595, exon 16 of 16)	3' UTR (NM_181595, exon 16 of 16)	33685.0	NM_011134	18979.0	Mm.237657	NM_011134	ENSMUSG00000002588	Pon1	Pon	paraoxonase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-37620078-7	chr13	37619967	37620167	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-205971.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-95297249-3	chr10	95297138	95297338	+	853.7222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001330138, intron 2 of 2)	intron (NM_001330138, intron 2 of 2)	26471.0	NM_001330138	12905.0	Mm.473739	NM_009950	ENSMUSG00000045867	Cradd	RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-156324375-4	chr2	156324261	156324461	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027585, intron 2 of 12)	intron (NM_027585, intron 2 of 12)	-11657.0	NM_020255	19018.0	Mm.389346	NM_020255	ENSMUSG00000046229	Scand1	2310003H23Rik|Leap1|PGC-2|Ppargc2	SCAN domain-containing 1	protein-coding	3.89452329426644	3.41325902313837	2.79570124545798	2.27608859816778	3.46643253150666	2.45132130316595	2.81832755091169	3.22497886042649	-0.32002152615594	0.642990526206293	0.982823301118608
Merged-chr9-119578636-2	chr9	119578536	119578736	+	600.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021544, intron 1 of 27)	CpG	380.0	NM_021544	20271.0	Mm.103584	NM_021544	ENSMUSG00000032511	Scn5a	Nav1.5|Nav1.5c|SkM1|SkM2|mH1	sodium channel, voltage-gated, type V, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-55812946-4	chr4	55812796	55812996	+	929.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-280421.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133095296-2	chr4	133095196	133095396	+	561.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35337.0	NM_153423	242687.0	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127734615-2	chr10	127734506	127734706	+	817.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4932.0	NM_198035	320080.0	Mm.27258	NM_198035	ENSMUSG00000044617	Zbtb39	7030401O21Rik|mKIAA0352	zinc finger and BTB domain containing 39	protein-coding	2.63060665651282	2.36993638646516	2.13806036521106	3.24866838886263	2.37182611772308	2.76854031056903	2.15416879078736	2.37203168750242	-0.511590820355963	0.513748276830773	0.9463431014646
Merged-chr9-21871040-1	chr9	21870940	21871140	+	547.0	f1_c57bl6.idr	Intergenic	Intergenic	-18405.0	NM_177030	319899.0	Mm.128153	NM_177030	ENSMUSG00000032198	Dock6	2410095B20Rik|4931431C02Rik|C330023D02Rik|mKIAA1395	dedicator of cytokinesis 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-116126713-1	chr9	116126613	116126813	+	775.0	f0_balb.idr	intron (NM_029575, intron 3 of 6)	intron (NM_029575, intron 3 of 6)	48650.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-73386795-4	chr14	73386694	73386894	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1505.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-6777847-2	chr17	6777747	6777947	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009510, intron 1 of 12)	B3|SINE|B2	4933.0	NM_009510	22350.0	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-96718592-4	chr9	96718505	96718705	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175537, intron 1 of 2)	MIRb|SINE|MIR	840.0	NM_001359960	245007.0	Mm.485954	NM_175537	ENSMUSG00000040433	Zbtb38	A930014K01Rik|CIBZ	zinc finger and BTB domain containing 38	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-95624512-4	chr1	95624448	95624648	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009183, intron 4 of 4)	intron (NM_009183, intron 4 of 4)	43046.0	NM_009183	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-50081426-4	chr18	50081313	50081513	+	819.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134131, intron 1 of 1)	Lx7|LINE|L1	-27751.0	NR_155293	102635912.0	Mm.440627	NR_155293		C030005K06Rik	-	RIKEN cDNA C030005K06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-52612342-4	chr3	52612234	52612434	+	968.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MEd|LINE|L1	95370.0	NR_153344	102631981.0	Mm.394225	NR_153344		Gm30173	-	predicted gene, 30173	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-85028596-2	chr10	85028496	85028696	+	808.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	73899.0	NM_010214	14202.0	Mm.46163	NM_010214	ENSMUSG00000050035	Fhl4	-	four and a half LIM domains 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-55389880-4	chr12	55389773	55389973	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310583, intron 1 of 6)	intron (NM_001310583, intron 1 of 6)	5651.0	NM_001310583	26443.0	Mm.30210	NM_011968	ENSMUSG00000021024	Psma6	IOTA	proteasome (prosome, macropain) subunit, alpha type 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-87769097-4	chr3	87768989	87769189	+	921.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289601)	promoter-TSS (NM_001289601)	-136.0	NM_152799	73182.0	Mm.158962	NM_028460	ENSMUSG00000028073	Pear1	3110045G13Rik|Jedi-1|Megf12	platelet endothelial aggregation receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-113172654-3	chr7	113172569	113172769	+	887.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30654.0	NR_045978	75239.0	Mm.381688	NR_045978	ENSMUSG00000110009	4930543E12Rik	4930545H14Rik	RIKEN cDNA 4930543E12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-22739775-3	chr14	22739678	22739878	+	696.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028275, intron 5 of 6)	intron (NM_028275, intron 5 of 6)	-196980.0	NR_046307	74896.0	Mm.444661	NR_046307	ENSMUSG00000114412	4930405A10Rik	4930456G20Rik	RIKEN cDNA 4930405A10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132212269-4	chr4	132212172	132212372	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145393)	promoter-TSS (NM_145393)	-16.0	NM_145393	213541.0	Mm.23998	NM_145393	ENSMUSG00000040025	Ythdf2	9430020E02Rik|HGRG8|NY-REN-2	YTH domain family 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84974422-4	chr8	84974325	84974525	+	976.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011563, exon 6 of 6)	3' UTR (NM_011563, exon 6 of 6)	4323.0	NM_008416	16477.0	Mm.1167	NM_008416	ENSMUSG00000052837	Junb	-	jun B proto-oncogene	protein-coding	4.00708556786666	3.43809832024706	3.67063969926952	4.83260636448733	3.67696064649974	2.6165878477247	3.53443614062213	2.89372254838108	-1.22682344337447	0.0314222052822348	0.244339697562081
Merged-chr18-12144906-3	chr18	12144825	12145025	+	869.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024182, intron 7 of 12)	intron (NM_024182, intron 7 of 12)	16075.0	NM_024182	66878.0	Mm.28551	NM_024182	ENSMUSG00000024404	Riok3	1200013N13Rik|D18Ertd331e|E130306C24Rik|Sudd	RIO kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-56012136-2	chr12	56012036	56012236	+	743.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19C|LTR|ERVK	175770.0	NR_155205	52592.0	Mm.24761	NM_027867	ENSMUSG00000012076	Brms1l	0710008O11Rik|AI159718|BRMS1|D12Ertd407e	breast cancer metastasis-suppressor 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-179832959-4	chr1	179832896	179833096	+	830.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-28981.0	NM_026375	226747.0	Mm.128165	NM_026375	ENSMUSG00000026491	Ahctf1	6230412P20Rik|AV011447|Elys	AT hook containing transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64933611-4	chr5	64933495	64933695	+	860.4541630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001276445)	promoter-TSS (NM_001276445)	-37.0	NM_001276445	21897.0	Mm.273024	NM_030682	ENSMUSG00000044827	Tlr1	-	toll-like receptor 1	protein-coding	2.19506648116531	1.30542838083881	1.04469549835842	1.69737389674256	1.8296276576727	1.06888946048283	1.88457184702534	1.92814678177748	0.215836724279985	0.857395154870508	0.998431161219273
Merged-chr4-154141348-3	chr4	154141252	154141452	+	884.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1020.0	NM_021499	59002.0	Mm.46508	NM_021499	ENSMUSG00000029029	Wrap73	2610044M17Rik|5330425N03Rik|Dd57|Wdr8	WD repeat containing, antisense to Trp73	protein-coding	-0.10129403594322	0.888449436571122	-0.0841680231382033	-0.0905353608562804	-0.0996781901533225	0.903496030457706	-0.0823628092250997	-0.0894170162904303	0.0395142251790123	0.986378381761409	1
Merged-chr3-115693682-4	chr3	115693580	115693780	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	21375.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-113441368-4	chr6	113441246	113441446	+	967.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1171.0	NM_001205025	67767.0	Mm.2053	NM_026365	ENSMUSG00000051256	Jagn1	5830427H10Rik	jagunal homolog 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-120243392-4	chr14	120243308	120243508	+	860.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32261.0	NM_207515	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-12153942-2	chr18	12153842	12154042	+	572.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_024182, exon 12 of 13)	exon (NM_024182, exon 12 of 13)	-14788.0	NM_029623	76482.0	Mm.196596	NM_029623	ENSMUSG00000024410	3110002H16Rik	2400010D15Rik|Mic-1|Mic1|Rmc1|Wdr98	RIKEN cDNA 3110002H16 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-51455982-4	chr10	51455877	51456077	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24635.0	NM_008147	14727.0	Mm.439661	NM_008147	ENSMUSG00000112023	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-148332781-3	chr5	148332678	148332878	+	943.7222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007513, intron 12 of 12)	intron (NM_007513, intron 12 of 12)	60037.0	NM_001301424	11987.0	Mm.275489	NM_007513	ENSMUSG00000041313	Slc7a1	4831426K01Rik|AI447493|Atrc-1|Atrc1|Cat1|Rec-1|Rev-1|mCAT-1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-16429943-4	chr8	16429849	16430049	+	923.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053171, intron 7 of 69)	intron (NM_053171, intron 7 of 69)	-261111.0	NR_037214	100526464.0		NR_037214	ENSMUSG00000093142	Mir3106	mir-3106|mmu-mir-3106	microRNA 3106	ncRNA	0.746427357686513	0.465963970331128	1.21490169896384	0.447384679726205	0.435704329421058	1.49558021861281	0.667023486673522	0.805225935046954	0.734615761244822	0.657031279304246	0.988668480197407
Merged-chr3-149380287-4	chr3	149380188	149380388	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	105551.0	NR_040591	381482.0	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-32168436-2	chr17	32168336	32168536	+	619.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1584.0	NM_008716	18131.0	Mm.439741	NM_008716	ENSMUSG00000038146	Notch3	AW229011|N3|hpbk	notch 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-79993663-7	chr18	79993605	79993805	+	957.369019	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53190.0	NM_053117	93737.0	Mm.24678	NM_053117	ENSMUSG00000056214	Pard6g	2410049N21Rik|Par6a	par-6 family cell polarity regulator gamma	protein-coding	3.33913028302512	1.73876133285277	3.29681939327389	3.20202466170376	3.49567092894748	4.13661259350556	3.89980303268363	2.79070991732879	0.979159703362123	0.138001788334131	0.579764340773025
Merged-chr8-26977115-4	chr8	26977018	26977218	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001101502)	promoter-TSS (NM_001101502)	-218.0	NM_001101502	353310.0	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-73056063-2	chr15	73055963	73056163	+	691.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029640)	promoter-TSS (NM_029640)	-251.0	NM_029640	76510.0	Mm.158902	NM_029640	ENSMUSG00000047921	Trappc9	1810044A24Rik|2900005P22Rik|4632408O18Rik|Ibp|Nibp|TRS130|mKIAA1882	trafficking protein particle complex 9	protein-coding	-0.289851946104314	-0.737899168765768	-0.740932179010924	-0.743264539078787	-0.280173431323445	-0.737213951634147	-0.740264187498491	-0.742857569821679	0.0418983010157508	0.98887086484455	1
Merged-chr7-80777256-5	chr7	80777210	80777410	+	957.2666630000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016721, intron 2 of 37)	intron (NM_016721, intron 2 of 37)	26021.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	-0.0450917717924175	-0.0284716207060396	-0.0339105545319253	0.596462680374067	0.104132877054453	0.600648109527189	0.149983823651338	-0.0373766943714411	0.483193529762017	0.821116906959504	1
Merged-chr4-83526375-4	chr4	83526264	83526464	+	961.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355549, intron 1 of 24)	intron (NM_001355549, intron 1 of 24)	819.0	NM_001355378	320226.0	Mm.180032	NM_029117	ENSMUSG00000052407	Ccdc171	4930418J05Rik|4930473A06Rik|A330015D16Rik	coiled-coil domain containing 171	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32878961-2	chr2	32878861	32879061	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146119, intron 1 of 13)	MIR3|SINE|MIR	2827.0	NM_146119	227737.0	Mm.301646	NM_146119	ENSMUSG00000026796	Fam129b	9130404D14Rik	family with sequence similarity 129, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-165663237-2	chr1	165663137	165663337	+	807.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038846, intron 2 of 5)	intron (NM_001038846, intron 2 of 5)	-28696.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46883437-4	chr8	46883330	46883530	+	939.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-103457.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-32896736-2	chr12	32896636	32896836	+	937.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57053.0	NR_044986	74076.0	Mm.50114	NR_044986	ENSMUSG00000097494	4933406C10Rik	-	RIKEN cDNA 4933406C10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80388790-4	chr7	80388715	80388915	+	864.158325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010194)	promoter-TSS (NM_010194)	-869.0	NM_010194	14159.0	Mm.48757	NM_010194	ENSMUSG00000053158	Fes	AI586313|BB137047|FPS|c-fes	feline sarcoma oncogene	protein-coding	2.76396467130417	2.06741946702044	1.7864566592946	2.98818011442925	2.99923426749708	2.82608364502017	2.49681624311648	2.92467222582699	0.629099822877771	0.415591956390916	0.896676881011847
Merged-chr2-12057606-2	chr2	12057506	12057706	+	990.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-243640.0	NR_040353	338535.0	Mm.483275	NR_040353	ENSMUSG00000086843	E030013I19Rik	-	RIKEN cDNA E030013I19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-39922870-4	chr1	39922755	39922955	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252202, intron 2 of 29)	intron (NM_001252202, intron 2 of 29)	21942.0	NM_008696	26921.0	Mm.491139	NM_008696	ENSMUSG00000026074	Map4k4	9430080K19Rik|AU043147|AU045934|AW046177|HGK|Nik	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67717718-3	chr10	67717608	67717808	+	912.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-145749.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-64311858-4	chr14	64311786	64311986	+	932.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253714, intron 1 of 4)	intron (NM_001253714, intron 1 of 4)	105070.0	NM_001253716	110265.0	Mm.26713	NM_026322	ENSMUSG00000054733	Msra	2310045J23Rik|6530413P12Rik|MSR-A	methionine sulfoxide reductase A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-120648123-2	chr5	120648023	120648223	+	945.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359144)	promoter-TSS (NM_001359144)	-689.0	NM_001359144	19415.0	Mm.41209	NM_013832	ENSMUSG00000029602	Rasal1	MRASAL	RAS protein activator like 1 (GAP1 like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-164813821-1	chr2	164813721	164813921	+	931.0	f1_c57bl6.idr	intron (NM_178375, intron 1 of 1)	MTD|LTR|ERVL-MaLR	8707.0	NM_178375	67538.0	Mm.33184	NM_178375	ENSMUSG00000045822	Zswim3	4921517A06Rik|C86566	zinc finger SWIM-type containing 3	protein-coding	0.448450992205049	0.130399754596088	0.281996362530614	0.391285135285183	0.456274008263383	0.131423807978965	0.286301403389152	0.395470210191504	0.0371137065356684	0.98384524970697	1
Merged-chr10-66813049-3	chr10	66812951	66813151	+	878.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	107333.0	NR_138560	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-70180866-2	chr10	70180766	70180966	+	692.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111121, intron 6 of 8)	intron (NM_001111121, intron 6 of 8)	-23798.0	NM_001304739	69563.0	Mm.64672	NM_001304739	ENSMUSG00000019933	Mrln	2310015B20Rik|Linc-RAM|Mln	myoregulin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-105650885-4	chr7	105650796	105650996	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153392, intron 2 of 3)	intron (NR_153392, intron 2 of 3)	10451.0	NM_001360054	14356.0	Mm.220330	NM_019502	ENSMUSG00000089847	Timm10b	Fxc1|Tim10b|Tim9b	translocase of inner mitochondrial membrane 10B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167984316-2	chr2	167984216	167984416	+	696.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080708, intron 17 of 21)	intron (NM_001080708, intron 17 of 21)	26277.0	NM_001080708	69553.0	Mm.68454	NM_001080708	ENSMUSG00000074577	Ripor3	2310033K02Rik|Fam65c|Gm124	RIPOR family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-40479471-2	chr9	40479371	40479571	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357617, intron 1 of 20)	intron (NM_001357617, intron 1 of 20)	-23707.0	NM_172768	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-4303316-4	chr18	4303209	4303409	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49644.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85513844-4	chr12	85513761	85513961	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39971.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81016892-2	chr15	81016792	81016992	+	737.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_153049, exon 10 of 13)	exon (NM_153049, exon 10 of 13)	39127.0	NM_134091	105835.0	Mm.274943	NM_134091	ENSMUSG00000042303	Sgsm3	1810012I01Rik|AI428557|BB175482|Cip85|R75178|RUSC3|Rutbc3	small G protein signaling modulator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-61982082-4	chr9	61981996	61982196	+	926.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028748, intron 2 of 7)	intron (NM_028748, intron 2 of 7)	-35297.0	NM_024245	71819.0	Mm.259374	NM_024245	ENSMUSG00000032254	Kif23	3110001D19Rik|C87313|CHO1|Knsl5|MKLP-1|MKLP1	kinesin family member 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-80785240-4	chr12	80785148	80785348	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5284.0	NM_178682	217684.0	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-11051186-2	chr19	11051086	11051286	+	829.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_102366)	promoter-TSS (NR_102366)	-620.0	NR_102366	107350.0	Mm.6381	NM_001177351	ENSMUSG00000075010	AW112010	-	expressed sequence AW112010	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-63600116-2	chr4	63600016	63600216	+	729.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_028583, intron 1 of 1)	RMER13A2|LTR|ERVK	648.0	NM_001354647	670833.0	Mm.32213	NM_001354647	ENSMUSG00000084782	Gm11213	-	predicted gene 11213	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-155582452-3	chr4	155582359	155582559	+	934.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355599, intron 2 of 10)	intron (NM_001355599, intron 2 of 10)	18644.0	NM_001355599	192185.0	Mm.28347	NM_138671	ENSMUSG00000029063	Nadk	4432404C02Rik|BC004012	NAD kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-84713234-3	chr16	84713111	84713311	+	722.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029565)	promoter-TSS (NR_029565)	188.0	NR_132106	100653389.0	Mm.261808	NR_132106	ENSMUSG00000097418	Mir155hg	Bic|Gm26667	Mir155 host gene (non-protein coding)	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-152096195-4	chr4	152096090	152096290	+	807.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285999)	promoter-TSS (NM_001285999)	-529.0	NM_001285999	269608.0	Mm.332102	NM_001004156	ENSMUSG00000039713	Plekhg5	BC023181|Syx	pleckstrin homology domain containing, family G (with RhoGef domain) member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-38814144-3	chr12	38814068	38814268	+	960.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163154, intron 2 of 9)	intron (NM_001163154, intron 2 of 9)	30457.0	NM_001163154	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-74897834-3	chr15	74897724	74897924	+	778.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16120.0	NM_025929	67038.0	Mm.154566	NM_025929	ENSMUSG00000063522	2010109I03Rik	Ly6m	RIKEN cDNA 2010109I03 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-6536254-2	chr2	6536154	6536354	+	551.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	183518.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-77289821-2	chr10	77289721	77289921	+	689.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_004429)	TTS (NR_004429)	30521.0	NM_030262	80294.0	Mm.203556	NM_030262	ENSMUSG00000020260	Pofut2	2310011G23Rik|AI256847|BC003494|C21orf80|FUT13	protein O-fucosyltransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122060192-2	chr5	122060092	122060292	+	684.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-10341.0	NM_001312908	13048.0	Mm.156172	NM_007804	ENSMUSG00000042589	Cux2	1700051K22Rik|Cutl2|Cux-2	cut-like homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-97757451-4	chr4	97757340	97757540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122952, intron 1 of 10)	intron (NM_001122952, intron 1 of 10)	-20186.0	NM_001122953	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-23399775-4	chr1	23399654	23399854	+	894.0750119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME2|LINE|L1	-16579.0	NM_001081079	70155.0	Mm.28013	NM_001081079	ENSMUSG00000026158	Ogfrl1	2210417C17Rik	opioid growth factor receptor-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-21820339-1	chr3	21820239	21820439	+	771.5	f0_balb.idr	Intergenic	Intergenic	-256313.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-176826322-4	chr1	176826207	176826407	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357390, intron 3 of 18)	intron (NM_001357390, intron 3 of 18)	9826.0	NR_037996	15365.0	Mm.441435	NR_037996		Hmga2-ps1	EG666235|Gm7996|Hmgic-ps1|[y]i-c	high mobility group AT-hook 2, pseudogene 1	pseudo	5.95346767898173	6.79564154729856	5.90177135668687	6.88963926403478	6.24621249843519	6.49933599385639	6.02751596580153	5.87602210119581	-0.298983098175514	0.261408277724837	0.762490238932561
Merged-chr14-16427796-4	chr14	16427672	16427872	+	970.68335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009409, intron 33 of 35)	intron (NM_009409, intron 33 of 35)	62566.0	NM_009409	21974.0	Mm.130362	NM_009409	ENSMUSG00000017485	Top2b	D230016L12Rik|Top-2	topoisomerase (DNA) II beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-44105783-4	chr17	44105706	44105906	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199016)	promoter-TSS (NM_199016)	2.0	NM_199016	224794.0	Mm.255971	NM_199016	ENSMUSG00000023961	Enpp4	4933413N07Rik|AA986363|AI195364|E-NPP 4|Gm90	ectonucleotide pyrophosphatase/phosphodiesterase 4	protein-coding	5.66936293482693	5.20699018821345	6.19501426235962	6.10988896717794	5.58803844958037	4.71020204020566	6.48398675479352	5.05285145568429	-0.244498380397697	0.497443248473574	0.936897994490085
Merged-chr10-121630438-5	chr10	121630481	121630681	+	862.93335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-4249.0	NM_001359618	73192.0	Mm.25042	NM_001081056	ENSMUSG00000034667	Xpot	1110004L07Rik|3110065H13Rik|AI452076|C79645|EXPORTIN-T	exportin, tRNA (nuclear export receptor for tRNAs)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-88285065-4	chr1	88284938	88285138	+	801.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7459.0	NM_198652	381280.0	Mm.384762	NM_198652	ENSMUSG00000044783	Hjurp	6430706D22Rik|A730008H23Rik|C330011F01Rik|Gm975|Mfleg1	Holliday junction recognition protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-78411967-2	chr10	78411867	78412067	+	549.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010925, intron 1 of 12)	intron (NM_010925, intron 1 of 12)	1076.0	NM_010925	18114.0	Mm.38344	NM_010925	ENSMUSG00000061032	Rrp1	AL033305|AL033306|AU018604|NNP-1|Nnp1	ribosomal RNA processing 1 homolog (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91354761-4	chr16	91354659	91354859	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18024.0	NM_010509	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-50463127-2	chr9	50463027	50463227	+	740.799988	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31398.0	NM_029639	76509.0	Mm.29959	NM_029639	ENSMUSG00000032068	Plet1	0610037B23Rik|1600029D21Rik|AA407923|AU043048	placenta expressed transcript 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-73224160-3	chr11	73224060	73224260	+	938.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_029031, exon 7 of 7)	3' UTR (NM_029031, exon 7 of 7)	-9989.0	NM_001001445	193034.0	Mm.447485	NM_001001445	ENSMUSG00000005952	Trpv1	OTRPC1|TRPV1alpha|TRPV1beta|VR-1|Vr1	transient receptor potential cation channel, subfamily V, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30436944-2	chr7	30436832	30437032	+	752.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_007467, intron 11 of 16)	intron (NM_007467, intron 11 of 16)	8650.0	NM_007467	11803.0	Mm.2381	NM_007467	ENSMUSG00000006651	Aplp1	-	amyloid beta (A4) precursor-like protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-74150241-2	chr16	74150141	74150341	+	771.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358493, intron 2 of 28)	Lx2|LINE|L1	191826.0	NR_030464	751561.0		NR_030464	ENSMUSG00000104758	Mir691	Mirn691|mir-691|mmu-mir-691	microRNA 691	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127650953-2	chr10	127650853	127651053	+	980.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_009284, exon 6 of 22)	exon (NM_009284, exon 6 of 22)	7967.0	NM_009284	20852.0	Mm.121721	NM_009284	ENSMUSG00000002147	Stat6	-	signal transducer and activator of transcription 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119230980-2	chr11	119230880	119231080	+	800.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175430, intron 1 of 18)	MTC|LTR|ERVL-MaLR	2408.0	NM_175430	207607.0	Mm.189885	NM_175430	ENSMUSG00000039963	Ccdc40	B930008I02Rik	coiled-coil domain containing 40	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129515178-4	chr2	129515087	129515287	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177653, intron 1 of 6)	intron (NM_177653, intron 1 of 6)	21415.0	NM_177653	228592.0	Mm.452175	NM_177653	ENSMUSG00000043727	F830045P16Rik	Sirpb3	RIKEN cDNA F830045P16 gene	protein-coding	5.58761713183067	6.21737349795869	5.32339779862933	5.74754428884857	4.96238746963253	5.31329549580327	4.45937542863844	4.54320377316365	-1.03346046284792	0.00127030536352894	0.0236330576429632
Merged-chr2-167227565-3	chr2	167227446	167227646	+	649.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008968, exon 2 of 10)	exon (NM_008968, exon 2 of 10)	12991.0	NM_008968	19223.0	Mm.2339	NM_008968	ENSMUSG00000017969	Ptgis	Cyp8|Cyp8a1|Pgis	prostaglandin I2 (prostacyclin) synthase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-97207310-2	chr3	97207210	97207410	+	732.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_029933, exon 9 of 10)	exon (NM_029933, exon 9 of 10)	20054.0	NM_029933	77578.0	Mm.226175	NM_029933	ENSMUSG00000038256	Bcl9	2610202E01Rik|8030475K17Rik|A330041G23Rik|Gm130	B cell CLL/lymphoma 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-122705997-4	chr7	122705904	122706104	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019430, intron 1 of 3)	L1M2|LINE|L1	34260.0	NM_019430	54376.0	Mm.444212	NM_019430	ENSMUSG00000066189	Cacng3	-	calcium channel, voltage-dependent, gamma subunit 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139387457-2	chr5	139387357	139387557	+	951.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_030258, intron 1 of 1)	intron (NM_030258, intron 1 of 1)	-2447.0	NM_001038703	80290.0	Mm.270003	NM_030258	ENSMUSG00000044197	Gpr146	BC003323|D830046C22Rik|PGR8	G protein-coupled receptor 146	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-4188740-2	chr11	4188640	4188840	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134023, intron 1 of 8)	intron (NM_134023, intron 1 of 8)	1907.0	NM_134023	103724.0	Mm.28140	NM_134023	ENSMUSG00000034412	Tbc1d10a	AI447804|EPI64|Tbc1d10|mFLJ00288	TBC1 domain family, member 10a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-45838454-1	chr1	45838354	45838554	+	819.5	f0_balb.idr	Intergenic	Intergenic	43288.0	NM_028599	73674.0	Mm.270376	NM_028599	ENSMUSG00000025995	Wdr75	1300003A18Rik|2410118I19Rik|C77608	WD repeat domain 75	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-13453604-2	chr10	13453504	13453704	+	595.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001195065, intron 1 of 12)	intron (NM_001195065, intron 1 of 12)	20792.0	NM_001195065	215789.0	Mm.283359	NM_001033257	ENSMUSG00000062866	Phactr2	AV158170|BC012871	phosphatase and actin regulator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-60745420-2	chr13	60745320	60745520	+	553.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 19 of 26)	intron (NM_134062, intron 19 of 26)	40944.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-121842398-3	chr3	121842289	121842489	+	875.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27087.0	NM_008991	19299.0	Mm.399042	NM_008991	ENSMUSG00000028127	Abcd3	AI313901|AU018866|AW146054|PMP68|PMP70|Pxmp1	ATP-binding cassette, sub-family D (ALD), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-138044711-3	chr1	138044608	138044808	+	943.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	78069.0	NR_029820	723890.0		NR_029820	ENSMUSG00000065458	Mir181b-1	Mirn181b-1|mir-181b-1	microRNA 181b-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-34858933-3	chr18	34858867	34859067	+	690.888916	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-2240.0	NM_007913	13653.0	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-110711673-1	chr8	110711573	110711773	+	543.0	f1_balb.idr	exon (NM_146216, exon 16 of 19)	exon (NM_146216, exon 16 of 19)	-9803.0	NM_198625	244654.0	Mm.490385	NM_198625	ENSMUSG00000033763	Mtss1l	ABBA	metastasis suppressor 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-12546500-2	chr18	12546400	12546600	+	635.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010680, intron 60 of 74)	intron (NM_010680, intron 60 of 74)	42301.0	NM_001347461	16774.0	Mm.42012	NM_010680	ENSMUSG00000024421	Lama3	Lama3B|[a]3B	laminin, alpha 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-139228710-1	chr4	139228610	139228810	+	937.0	f1_c57bl6.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	34599.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	-0.493384239383991	-0.481117247289303	0.193375206987826	-0.488236707431993	-0.00453859917135163	-0.480211366170247	-0.484249655208616	-0.487695023010815	-0.644666625916222	0.815643850765914	1
Merged-chr17-15751424-1	chr17	15751324	15751524	+	605.0	f1_balb.idr	intron (NM_007690, intron 22 of 35)	B2_Mm1t|SINE|B2	46457.0	NM_007690	12648.0	Mm.8137	NM_007690	ENSMUSG00000023852	Chd1	4930525N21Rik|AI851787|AW555109	chromodomain helicase DNA binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-25858147-3	chr14	25858058	25858258	+	801.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013469, intron 1 of 14)	intron (NM_013469, intron 1 of 14)	16003.0	NM_013469	11744.0	Mm.294083	NM_013469	ENSMUSG00000021866	Anxa11	A830099O17Rik|Anx11	annexin A11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72099460-3	chr6	72099353	72099553	+	939.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011375, intron 1 of 6)	intron (NM_011375, intron 1 of 6)	1845.0	NM_011375	20454.0	Mm.38248	NM_011375	ENSMUSG00000056091	St3gal5	3S-T|Siat9|[a]2	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-60306158-2	chr10	60306058	60306258	+	764.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045556, exon 62 of 69)	non-coding (NR_045556, exon 62 of 69)	21697.0	NM_001146124	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-46524231-4	chr17	46524143	46524343	+	993.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081335, intron 16 of 40)	intron (NM_001081335, intron 16 of 40)	22145.0	NM_001081335	78309.0	Mm.329076	NM_001081335	ENSMUSG00000040327	Cul9	1810035I07Rik|Cul-9|Parc|mKIAA0708	cullin 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-155735478-2	chr4	155735378	155735578	+	822.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001101506, exon 2 of 4)	exon (NM_001101506, exon 2 of 4)	674.0	NM_001101506	381582.0	Mm.379515	NM_001101506	ENSMUSG00000084845	Tmem240	EG381582|Gm5151	transmembrane protein 240	protein-coding	0.978149501058726	2.30045631924042	1.71953839924952	1.53886385305289	1.33477078053261	1.48484992145721	1.59618516331288	1.6779585160393	-0.641343969864349	0.577256580159234	0.96585843058813
Merged-chr1-62283802-4	chr1	62283702	62283902	+	969.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081050, intron 16 of 22)	intron (NM_001081050, intron 16 of 22)	-147693.0	NR_151537	105243940.0		NR_151537		Pard3bos2	Gm12747	par-3 family cell polarity regulator beta, opposite strand 2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-8264842-3	chr17	8264750	8264950	+	822.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18963.0	NM_018819	55951.0	Mm.288510	NM_018819	ENSMUSG00000023861	Mpc1	0610006G08Rik|3830411I18Rik|Brp44l	mitochondrial pyruvate carrier 1	protein-coding	-1.03910503605909	-1.01950163738966	-1.03124387632436	-1.03561021741072	-0.461303982943701	-0.832198020436698	-1.02858569081209	-1.03524206189735	2.87890770662184	0.357049134472556	1
Merged-chr2-164460909-4	chr2	164460841	164461041	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025575)	promoter-TSS (NM_025575)	-30.0	NM_025575	66460.0	Mm.44218	NM_025575	ENSMUSG00000045503	Sys1	2610042O14Rik|AI266964|C87389	SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)	protein-coding	2.77315574210471	3.63704226901856	1.70617002416554	3.33373625595395	3.71462225128884	3.74336283573074	3.89293339291952	4.09456300135083	1.26841075287922	0.0393649012945434	0.282061567416037
Merged-chr16-77038372-2	chr16	77038272	77038472	+	872.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013918, intron 3 of 23)	intron (NM_013918, intron 3 of 23)	24303.0	NM_013918	30940.0	Mm.40986	NM_013918	ENSMUSG00000022867	Usp25	-	ubiquitin specific peptidase 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31386251-4	chr14	31386144	31386344	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347585, intron 3 of 7)	intron (NM_001347585, intron 3 of 7)	31433.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-16879930-4	chr12	16879830	16880030	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15048.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	3.86220087942746	4.03890006788371	4.30800033997628	4.88961565511011	4.63569447868274	4.69856564095361	4.82319170340062	4.60841308558366	0.452345962365775	0.248991050691558	0.747698903845194
Merged-chr16-4608015-4	chr16	4607927	4608127	+	863.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031184, intron 1 of 6)	intron (NM_031184, intron 1 of 6)	13314.0	NM_031184	83396.0	Mm.134072	NM_031184	ENSMUSG00000014303	Glis2	Gli5|Klf16|Nkl	GLIS family zinc finger 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-35839253-3	chr11	35839197	35839397	+	703.266663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_170779, intron 22 of 22)	intron (NM_170779, intron 22 of 22)	-4769.0	NM_025936	104458.0	Mm.284906	NM_025936	ENSMUSG00000018848	Rars	2610011N19Rik|2610037E21Rik|AL033339|AW985894	arginyl-tRNA synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-148399162-1	chr6	148399062	148399262	+	549.0	f1_balb.idr	intron (NM_198967, intron 5 of 19)	intron (NM_198967, intron 5 of 19)	44506.0	NR_003634	66184.0	Mm.391542	NM_025405	ENSMUSG00000063171	Rps4l	1110033J19Rik|AA407494|Rps4y2	ribosomal protein S4-like	pseudo	1.39551859186112	0.859605570077553	0.843683179125911	2.0215589660576	1.40830498587578	0.863145688374034	1.66051985060331	1.48798828387628	-0.0224154799563029	0.987083053387183	0.998431161219273
Merged-chr16-35981704-4	chr16	35981589	35981789	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	-1674.0	NM_008465	16646.0	Mm.3991	NM_008465	ENSMUSG00000022905	Kpna1	AW494490|IPOA5|NPI1|Rch2|mSRP1	karyopherin (importin) alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-11486261-4	chr8	11486169	11486369	+	933.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7770.0	NM_011227	19332.0	Mm.37632	NM_011227	ENSMUSG00000031504	Rab20	AA536966|D8Ertd350e	RAB20, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-120037759-6	chr9	120037806	120038006	+	879.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-14308.0	NM_011724	22437.0	Mm.10117	NM_011724	ENSMUSG00000079243	Xirp1	AI415219|Cmya1	xin actin-binding repeat containing 1	protein-coding	1.25229076152739	1.66874864048619	1.6104960731006	0.963548473185493	1.49672883523156	1.39388771225908	1.49679591649154	1.67976033643099	0.421163145484896	0.72282749982336	0.998431161219273
Merged-chr2-25211426-4	chr2	25211327	25211527	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021393)	promoter-TSS (NM_021393)	62.0	NM_021393	58202.0	Mm.116418	NM_021393	ENSMUSG00000013465	Nelfb	A730008L03Rik|AB041607|AI663983|Cobra1|Nelf-b	negative elongation factor complex member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-113626226-2	chr6	113626126	113626326	+	914.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009507, intron 1 of 2)	B3|SINE|B2	2205.0	NM_009507	22346.0	Mm.29407	NM_009507	ENSMUSG00000033933	Vhl	Vhlh	von Hippel-Lindau tumor suppressor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-16869618-3	chr12	16869469	16869669	+	892.5277710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25409.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	0.0120305217199503	0.0298411600063277	0.706128860616901	0.0195191540108374	0.505213469981008	0.541399901674457	0.0253044572642039	0.0203058935643693	0.407349962859615	0.854748473507944	1
Merged-chr7-102230220-3	chr7	102230125	102230325	+	939.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_111937, intron 2 of 5)	intron (NR_111937, intron 2 of 5)	7197.0	NR_111937	233575.0	Mm.302013	NM_145583	ENSMUSG00000030990	Pgap2	1810006G21Rik|C76649|Frag1	post-GPI attachment to proteins 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53147709-2	chr4	53147609	53147809	+	827.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 1 of 49)	intron (NM_013454, intron 1 of 49)	12186.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-52713721-4	chr6	52713571	52713771	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025816)	promoter-TSS (NM_025816)	-58.0	NM_025816	52440.0	Mm.389757	NM_025816	ENSMUSG00000004535	Tax1bp1	1200003J11Rik|1700069J21Rik|AA930106|D6Ertd404e|D6Ertd772e|T6bp|TXBP151	Tax1 (human T cell leukemia virus type I) binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-12874052-2	chr8	12873952	12874152	+	999.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41841.0	NM_178076	17207.0	Mm.334413	NM_178076	ENSMUSG00000031442	Mcf2l	C130040G20Rik|Dbs|Ost|mKIAA0362	mcf.2 transforming sequence-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-21014663-2	chr1	21014563	21014763	+	806.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_177409, intron 2 of 10)	intron (NM_177409, intron 2 of 10)	63037.0	NM_027974	71877.0	Mm.29178	NM_027974	ENSMUSG00000041809	Efhc1	1700029F22Rik|mRib72-1|myoclonin1	EF-hand domain (C-terminal) containing 1	protein-coding	2.12347644248913	2.30014110435137	1.15358411825811	1.82886806114321	1.96442903992071	2.09524865602977	1.89728810675052	1.13818115179305	-0.274433243560673	0.804846824793034	0.998431161219273
Merged-chr7-63913274-2	chr7	63913174	63913374	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021366, intron 1 of 1)	RMER17C|LTR|ERVK	-3583.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	1.92154106277442	0.608212063243989	0.591938659363328	0.989854769069716	1.94214941087274	0.611815489310561	0.59556947342059	0.99635120294448	0.0399030114026142	0.980097784824216	0.998431161219273
Merged-chr18-35416542-2	chr18	35416442	35416642	+	635.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360814, intron 3 of 9)	intron (NM_001360814, intron 3 of 9)	53410.0	NM_001360814	81500.0	Mm.291482	NM_030749	ENSMUSG00000024357	Sil1	1810057E01Rik|AI042831|wz	endoplasmic reticulum chaperone SIL1 homolog (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-83023816-2	chr15	83023712	83023912	+	583.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271414)	promoter-TSS (NM_001271414)	-674.0	NM_001271414	74039.0	Mm.32584	NM_028728	ENSMUSG00000058099	Nfam1	4921501M20Rik|Cnaip	Nfat activating molecule with ITAM motif 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-58449082-2	chr13	58448982	58449182	+	646.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-45739.0	NM_001301341	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-65394630-1	chr16	65394530	65394730	+	620.5	f0_balb.idr	Intergenic	Intergenic	-125999.0	NM_008849	18736.0	Mm.355440	NM_008849	ENSMUSG00000004842	Pou1f1	GHF-1|Hmp1|Pit-1|Pit1|Pit1-rs1|dw|dwarf	POU domain, class 1, transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-69582344-2	chr12	69582240	69582440	+	721.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001033236, exon 3 of 6)	exon (NM_001033236, exon 3 of 6)	688.0	NM_001033236	207965.0	Mm.102487	NM_001033236	ENSMUSG00000049882	Vcpkmt	Gm71|Mettl21d|Mettl221d|VCP-KMT	valosin containing protein lysine (K) methyltransferase	protein-coding	1.46920897322005	0.659585514736531	1.52156249616051	0.628105725414331	1.13867797340855	2.18036189706459	0.645957294587731	0.630566079097513	0.636659829757419	0.681033513272193	0.995882295196263
Merged-chr18-69436405-1	chr18	69436305	69436505	+	542.0	f1_c57bl6.idr	intron (NM_001361128, intron 3 of 19)	intron (NM_001361128, intron 3 of 19)	90245.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-8715856-3	chr10	8715748	8715948	+	873.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	170222.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-29387887-2	chr17	29387787	29387987	+	575.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	26973.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-60716569-2	chr13	60716469	60716669	+	547.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 3 of 26)	intron (NM_134062, intron 3 of 26)	69795.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-4542110-2	chr7	4542010	4542210	+	661.700012	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360421, intron 6 of 8)	intron (NM_001360421, intron 6 of 8)	5431.0	NM_001360421	53420.0	Mm.358663	NM_016908	ENSMUSG00000004961	Syt5	SytV	synaptotagmin V	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80078081-3	chr7	80077927	80078127	+	911.8777470000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175433, intron 1 of 4)	intron (NM_175433, intron 1 of 4)	-2770.0	NR_045695	100859962.0	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-50196199-3	chr17	50196079	50196279	+	705.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-5682.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-59768778-2	chr13	59768678	59768878	+	729.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026921, intron 1 of 3)	intron (NM_026921, intron 1 of 3)	1011.0	NM_026921	69046.0	Mm.7884	NM_026921	ENSMUSG00000044792	Isca1	1810010A06Rik|Hbld2	iron-sulfur cluster assembly 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-35111452-2	chr8	35111349	35111549	+	637.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-145759.0	NM_175091	21951.0	Mm.88364	NM_175091	ENSMUSG00000031529	Tnks	4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106704858-1	chr11	106704758	106704958	+	763.0	f0_balb.idr	intron (NM_001305158, intron 2 of 14)	intron (NM_001305158, intron 2 of 14)	10423.0	NM_001305158	18613.0	Mm.343951	NM_008816	ENSMUSG00000020717	Pecam1	C85791|Cd31|PECAM-1|Pecam	platelet/endothelial cell adhesion molecule 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-31944031-4	chr12	31943925	31944125	+	845.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177993, intron 1 of 8)	intron (NM_177993, intron 1 of 8)	6220.0	NM_177993	73389.0	Mm.390461	NM_153198	ENSMUSG00000002996	Hbp1	1700058O05Rik|BE629963|C330012F01Rik|C86454	high mobility group box transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-86799039-4	chr12	86798905	86799105	+	719.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	64636.0	NM_001195767	627607.0	Mm.341880	NM_001195767	ENSMUSG00000059114	Lrrc74a	EG627607|Gm6772|Lrrc74	leucine rich repeat containing 74A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-46521660-2	chr18	46521560	46521760	+	805.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_173423, intron 2 of 2)	B1_Mus2|SINE|Alu	4311.0	NM_173423	240263.0	Mm.38249	NM_173423	ENSMUSG00000033319	Fem1c	2610312A07Rik|3632443A22Rik|AI646567	fem-1 homolog c (C.elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30588910-4	chr7	30588809	30589009	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290573)	promoter-TSS (NM_001290573)	-183.0	NM_029274	75410.0	Mm.168688	NM_029274	ENSMUSG00000006307	Kmt2b	2610014H22Rik|Mll2|Wbp7|mKIAA0304	lysine (K)-specific methyltransferase 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41304873-1	chr19	41304773	41304973	+	646.0	f1_balb.idr	intron (NM_031376, intron 9 of 16)	intron (NM_031376, intron 9 of 16)	-40869.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	-0.871559037381726	-0.856638476330222	-0.861583137644455	-0.865283896969569	-0.870614807574855	-0.855415350575532	0.207976872237578	-0.86463319879494	3.89850570063307	0.158045432396183	1
Merged-chr4-126101859-1	chr4	126101759	126101959	+	753.0	f1_balb.idr	Intergenic	ID_B1|SINE|B4	-2098.0	NM_028800	74178.0	Mm.440269	NM_028800	ENSMUSG00000042608	Stk40	2310004N11Rik|AI428792	serine/threonine kinase 40	protein-coding	2.38077145959829	2.43543585326973	1.40201312429671	2.69941794106317	2.5815962838638	3.21465110708012	2.07447273672559	2.16290788018706	0.579849868478153	0.508113417133685	0.943374049681311
Merged-chr4-128733706-4	chr4	128733616	128733816	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195083, intron 1 of 6)	intron (NM_001195083, intron 1 of 6)	6145.0	NM_001195083	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	3.66439103475742	4.24222060561348	4.16716810319719	4.65831439613193	3.30149391405711	3.98707443416084	4.41875393953567	4.60312153559794	-0.0854440994530331	0.856010999101282	0.998431161219273
Merged-chr1-165757311-2	chr1	165757211	165757411	+	623.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-6447.0	NR_149310	433375.0	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-82992294-3	chr8	82992186	82992386	+	695.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177378, intron 2 of 6)	intron (NM_177378, intron 2 of 6)	128930.0	NM_177378	330812.0	Mm.491438	NM_177378	ENSMUSG00000047747	Rnf150	A630007N06Rik|C030044C12Rik|Greul5|mKIAA1214	ring finger protein 150	protein-coding	2.55185623582693	2.58563321804342	2.59589345600641	3.03660065470925	1.9688315742309	1.34807712827542	2.27990868816641	1.27979828660326	-2.14300852126875	0.0214521807781976	0.187688331290823
Merged-chr2-121447987-2	chr2	121447887	121448087	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-1211.0	NM_011354	378702.0	Mm.262252	NM_011354	ENSMUSG00000074884	Serf2	C80083|Msmac1l|m4F5rel	small EDRK-rich factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-34785383-2	chr2	34785283	34785483	+	922.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145522, intron 5 of 7)	ID_B1|SINE|B4	13293.0	NM_022310	14828.0	Mm.330160	NM_022310	ENSMUSG00000026864	Hspa5	AL022860|AU019543|Bip|D2Wsu141e|D2Wsu17e|Grp78|Hsce70|SEZ-7|Sez7|baffled|mBiP	heat shock protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-28261971-4	chr6	28261848	28262048	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081678)	promoter-TSS (NM_001081678)	-347.0	NM_001081678	627049.0	Mm.84441	NM_001081678	ENSMUSG00000039841	Zfp800	AA407452|Znf800	zinc finger protein 800	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-100505972-3	chr9	100505941	100506141	+	865.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010878, intron 2 of 3)	intron (NM_010878, intron 2 of 3)	815.0	NM_001324530	17973.0	Mm.181485	NM_010878	ENSMUSG00000032475	Nck1	6330586M15Rik|D230010O13Rik|Nck|Nck-1	non-catalytic region of tyrosine kinase adaptor protein 1	protein-coding	-0.170712190493275	-0.49799864144845	-0.34193483262817	-0.503350132375995	-0.163033233492066	-0.497312223134781	-0.337863014045359	-0.502945664122875	0.0414143620172725	0.986720289218746	1
Merged-chr4-19952193-3	chr4	19952091	19952291	+	777.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29625.0	NM_175406	242341.0	Mm.19298	NM_175406	ENSMUSG00000028238	Atp6v0d2	1620401A02Rik|AI324824|V-ATPase	ATPase, H+ transporting, lysosomal V0 subunit D2	protein-coding	1.05744568897162	0.617328818544575	0.593256705942472	0.40325416355718	0.678565347479749	1.17148002253543	0.411125210970057	0.577777857745363	0.269756798993494	0.869822626863078	1
Merged-chr7-121985656-2	chr7	121985556	121985756	+	864.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3963.0	NM_001033318	233824.0	Mm.442015	NM_001033318	ENSMUSG00000034951	Cog7	5630400E24Rik|Gm167	component of oligomeric golgi complex 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-127803019-2	chr3	127802917	127803117	+	747.416626	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	12360.0	NM_001356430	211550.0	Mm.31852	NM_145133	ENSMUSG00000046688	Tifa	T2bp	TRAF-interacting protein with forkhead-associated domain	protein-coding	2.03455020943661	3.66835567779567	3.30533391097937	3.21214017696453	3.66783124367359	3.00578718934137	3.41837335272914	3.786555864641	0.531437039027053	0.397100136579127	0.883497485228651
Merged-chr15-27212225-2	chr15	27212125	27212325	+	710.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MurERV4-int|LTR|ERVK	-254452.0	NM_020332	11732.0	Mm.265264	NM_020332	ENSMUSG00000022265	Ank	Ankh|D15Ertd221e|ank|mKIAA1581	progressive ankylosis	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21032225-3	chr9	21032170	21032370	+	862.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_035438)	promoter-TSS (NR_035438)	58.0	NR_035438	100316681.0		NR_035438	ENSMUSG00000084663	Mir1900	Mirn1900|mmu-mir-1900	microRNA 1900	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-71230889-3	chr11	71230805	71231005	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001040696)	promoter-TSS (NM_001040696)	-172.0	NM_001040696	637515.0	Mm.390402	NM_001039680	ENSMUSG00000070390	Nlrp1b	Nalp1b	NLR family, pyrin domain containing 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35813333-4	chr17	35813223	35813423	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8390.0	NM_133662	15937.0	Mm.25613	NM_133662	ENSMUSG00000003541	Ier3	AI663993|IEX-1|cI-3|gly96	immediate early response 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-20557767-3	chr8	20557707	20557907	+	984.466675	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-57120.0	NM_001270553	100861668.0	Mm.491087	NM_001270553	ENSMUSG00000095294	Gm21119	-	predicted gene, 21119	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56069694-2	chr17	56069594	56069794	+	905.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_024432, exon 8 of 12)	exon (NM_024432, exon 8 of 12)	9639.0	NM_024432	66530.0	Mm.28000	NM_024432	ENSMUSG00000019578	Ubxn6	1200008L11Rik|2210415J11Rik|AU040909|Ubxd1|Ubxdc2	UBX domain protein 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-20533410-4	chr11	20533317	20533517	+	788.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9836.0	NM_021372	58172.0	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	-1.22315906685268	-1.19557143632602	-1.20673282037136	-0.55836125556573	-1.22265483704505	-1.19315271784257	-1.20420612767407	-1.21425999345206	-2.67891099987134	0.437057736398543	1
Merged-chr13-41019161-4	chr13	41019062	41019262	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360770, intron 3 of 4)	intron (NM_001360770, intron 3 of 4)	2912.0	NM_001360770	66154.0	Mm.30005	NM_025387	ENSMUSG00000021361	Tmem14c	1110021D01Rik|AU020193|HSPC194	transmembrane protein 14C	protein-coding	0.318677934111785	-0.316121796939667	-0.320621291183538	-0.32409402702331	0.331322051847464	-0.315107779543456	-0.319628743977455	-0.32348726480789	0.0419906371069014	0.98733725566035	1
Merged-chr16-8829303-2	chr16	8829203	8829403	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081400)	promoter-TSS (NM_001081400)	-797.0	NM_001081400	69053.0	Mm.390868	NM_001081400	ENSMUSG00000022507	1810013L24Rik	1110017P05Rik|3010002C02Rik|AA792997|AW124177|Gm19906|R74903	RIKEN cDNA 1810013L24 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-47588532-3	chr9	47588458	47588658	+	903.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	MTEa|LTR|ERVL-MaLR	58206.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	2.84992605906426	1.94624429779423	1.35737876379343	1.31920998395233	2.6339388080179	3.06393890300069	2.86756900446755	3.50584732523343	1.97060873770418	0.0275540831111551	0.223575668959179
Merged-chr10-24591980-4	chr10	24591889	24592089	+	941.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3453.0	NM_010217	14219.0	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	1.99997874395689	1.81541980326874	1.17192204099853	1.69543733638063	1.71175691332162	0.978782134004696	1.17923627909805	1.15057193821752	-1.44223712016862	0.236417348676438	0.7331006782763
Merged-chr5-124898922-3	chr5	124898828	124899028	+	678.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME2z|LINE|L1	36223.0	NM_001081750	269704.0	Mm.138617	NM_001081750	ENSMUSG00000079215	Zfp664	AW060232|D930038J03Rik|ZFOC1|Znf664	zinc finger protein 664	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-8170848-2	chr14	8170748	8170948	+	729.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_024221, intron 5 of 9)	B1_Mm|SINE|Alu	2144.0	NM_024221	68263.0	Mm.301527	NM_024221	ENSMUSG00000021748	Pdhb	2610103L06Rik|AL024199|C81408	pyruvate dehydrogenase (lipoamide) beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-181210154-2	chr1	181210054	181210254	+	611.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145514, intron 1 of 13)	intron (NM_145514, intron 1 of 13)	1824.0	NM_145514	226757.0	Mm.289082	NM_145514	ENSMUSG00000038733	Wdr26	1600024A01Rik|AA693241|AI447817|AU044014|C77982|Gid7	WD repeat domain 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-45411895-2	chr9	45411795	45411995	+	837.799988	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5818.0	NM_007503	11936.0	Mm.22742	NM_007503	ENSMUSG00000059412	Fxyd2	Atp1g1	FXYD domain-containing ion transport regulator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132383128-2	chr4	132383028	132383228	+	743.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161797, intron 3 of 12)	intron (NM_001161797, intron 3 of 12)	-29442.0	NR_003270	399101.0	Mm.486919	NR_002904	ENSMUSG00000085241	Snhg3	Rnu17d|U17HG	small nucleolar RNA host gene 3	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-105039862-1	chr13	105039762	105039962	+	607.0	f0_balb.idr	intron (NM_029879, intron 2 of 5)	intron (NM_029879, intron 2 of 5)	15068.0	NM_029879	52882.0	Mm.100348	NM_029879	ENSMUSG00000021719	Rgs7bp	A930030I01Rik|AI842293|D13Bwg1146e|R7bp	regulator of G-protein signalling 7 binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-80290176-4	chr17	80290085	80290285	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_194269)	promoter-TSS (NM_194269)	-27.0	NM_194269	378462.0	Mm.45208	NM_194269	ENSMUSG00000045257	Morn2	Mopt	MORN repeat containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-17335048-4	chr19	17334972	17335172	+	970.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010265, intron 1 of 2)	intron (NM_010265, intron 1 of 2)	4433.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	5.77437979624564	3.64564497884691	4.94748120406583	5.44807152290527	3.99726645149569	4.41415102567813	3.913543002252	3.52026815211894	-1.45651111466672	0.00165296573360444	0.0291651218702736
Merged-chr5-65038466-3	chr5	65038351	65038551	+	880.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026667, intron 12 of 13)	MIR|SINE|MIR	68133.0	NR_030577	100124451.0		NR_030577	ENSMUSG00000077042	Mir574	Mirn574|mir-574|mmu-mir-574	microRNA 574	ncRNA	-0.224280198411899	-0.017164638384077	-0.34681893360834	-0.349501367195616	-0.00366194243617576	-0.0103098779481782	-0.346049500571895	-0.349033774992521	0.653141662612751	0.783674472452553	1
Merged-chr4-18283648-1	chr4	18283548	18283748	+	643.0	f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	430190.0	NM_019724	17389.0	Mm.187315	NM_019724	ENSMUSG00000028226	Mmp16	MT-MMP 3|MT3-MMP|Mt3mmp	matrix metallopeptidase 16	protein-coding	-0.127582092177399	-0.456769787220722	-0.459934352751085	-0.0761589177419515	-0.465762191192108	-0.456053148358661	-0.295639580298122	-0.311639373445719	-1.34198684627461	0.587723864737083	1
Merged-chr5-124588402-1	chr5	124588302	124588502	+	738.0	f1_c57bl6.idr	intron (NM_181410, intron 4 of 12)	B3|SINE|B2	9254.0	NM_181410	209357.0	Mm.185467	NM_181410	ENSMUSG00000029387	Gtf2h3	34kDa|5033417D07Rik|BTF2|BTF2 p34|C730029A10|D5Ertd679e|TFIIH	general transcription factor IIH, polypeptide 3	protein-coding	-0.211383844073466	-0.0203718843469898	-0.203324689886082	0.074467040583884	0.318543697266033	-0.198468574739368	-0.202453097144809	0.0787075589519039	1.00066668246481	0.66178652289122	1
Merged-chr13-97203298-3	chr13	97203203	97203403	+	885.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-4946.0	NM_010422	15212.0	Mm.27816	NM_010422	ENSMUSG00000021665	Hexb	-	hexosaminidase B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-66746583-4	chr15	66746477	66746677	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009375, intron 34 of 47)	intron (NM_009375, intron 34 of 47)	75807.0	NM_009375	21819.0	Mm.441333	NM_009375	ENSMUSG00000053469	Tg	Tgn|cog	thyroglobulin	protein-coding	4.55138458390615	4.53191450397554	4.64181988254081	4.52150378833373	4.24436268893182	4.77291743666336	5.26194259204062	4.23339873404634	0.160951287508352	0.675897658290024	0.99440487726309
Merged-chr10-111455097-4	chr10	111455000	111455200	+	926.9249880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-18127.0	NM_001358932	53605.0	Mm.290407	NM_015781	ENSMUSG00000058799	Nap1l1	AA407126|AI256722|D10Ertd68e|NAP-1	nucleosome assembly protein 1-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-142757704-4	chr6	142757609	142757809	+	880.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009908, intron 1 of 7)	intron (NM_009908, intron 1 of 7)	1023.0	NM_009908	12764.0	Mm.3820	NM_009908	ENSMUSG00000030282	Cmas	AW208911|CMPNeu5Ac|D6Bwg0250e	cytidine monophospho-N-acetylneuraminic acid synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122131298-4	chr5	122131200	122131400	+	974.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183307, intron 2 of 12)	intron (NM_183307, intron 2 of 12)	3593.0	NM_001289811	330188.0	Mm.386907	NM_183307	ENSMUSG00000043036	Ccdc63	4921511C16Rik	coiled-coil domain containing 63	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-99714205-2	chr4	99714105	99714305	+	779.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1425.0	NM_001081264	320438.0	Mm.32408	NM_001081264	ENSMUSG00000073792	Alg6	E230028F23Rik	asparagine-linked glycosylation 6 (alpha-1,3,-glucosyltransferase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-73621633-2	chr15	73621533	73621733	+	589.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033219, intron 1 of 7)	B3|SINE|B2	3111.0	NM_001033219	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-90244077-2	chr9	90243977	90244177	+	665.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 2 of 12)	intron (NM_194334, intron 2 of 12)	26692.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5944380-4	chr19	5944282	5944482	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164057, intron 13 of 17)	intron (NM_001164057, intron 13 of 17)	-19566.0	NM_026772	104252.0	Mm.491103	NM_026772	ENSMUSG00000045664	Cdc42ep2	1110008C05Rik|Borg1|Cep2|D19Bwg1013e	CDC42 effector protein (Rho GTPase binding) 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-84126330-4	chr17	84126238	84126438	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47678.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-61040042-4	chr18	61039930	61040130	+	927.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3831.0	NM_009880	12590.0	Mm.144448	NM_009880	ENSMUSG00000024619	Cdx1	Cdx|Cdx-1	caudal type homeobox 1	protein-coding	2.17062486413385	3.13209822855411	3.37849047196791	2.94198987506746	2.71254490735272	3.51626675227438	3.32508406871968	3.22555067035124	0.42714842041664	0.512401850910581	0.945451213166439
Merged-chr14-46129892-4	chr14	46129732	46129932	+	885.1875	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45805.0	NR_002875	218963.0	Mm.282093	NR_002875		Gm1821	-	ubiquitin pseudogene	pseudo	0.324922989724957	0.370775894219458	0.356239459344144	0.344713199575604	0.990953961421619	0.373993303452699	1.94422775472499	1.19669049998085	4.935768767754	0.00478798757366937	0.0647403548935595
Merged-chr11-87769601-1	chr11	87769501	87769701	+	1000.0	f1_balb.idr	intron (NM_172449, intron 12 of 31)	intron (NM_172449, intron 12 of 31)	9060.0	NM_172449	207777.0	Mm.342019	NM_172449	ENSMUSG00000034156	Tspoap1	Bzrap1|D230016K05|PRAX-1|mKIAA0612	TSPO associated protein 1	protein-coding	-1.13146769101922	-1.10460487238646	-1.11735372523027	-1.12713099301154	-1.13082009585647	-0.300663969208598	-1.11446766439333	-1.12595147812057	3.06518455575839	0.353555291099784	1
Merged-chr9-106469578-3	chr9	106469480	106469680	+	697.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001311150)	TTS (NM_001311150)	-3640.0	NM_001159652	436090.0	Mm.482905	NM_001159652	ENSMUSG00000091735	Gpr62	4933402E03Rik	G protein-coupled receptor 62	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-173412657-2	chr1	173412566	173412766	+	894.666626	f0_c57.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	-7938.0	NM_001013779	383619.0	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	2.52738294977319	3.03642052172882	3.35509987282924	1.6345516704307	2.6395136142646	1.46079065248309	2.86729499990852	2.20366798278808	-0.754604277311244	0.392220876761133	0.881138324687318
Merged-chr10-79826263-2	chr10	79826163	79826363	+	637.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_030218, exon 2 of 5)	exon (NM_030218, exon 2 of 5)	5242.0	NM_030218	78906.0	Mm.33087	NM_030218	ENSMUSG00000035852	Misp	9130017N09Rik	mitotic spindle positioning	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-134417743-2	chr1	134417643	134417843	+	751.099976	f1_balb.idr|f1_c57bl6.idr	intron (NM_001306069, intron 1 of 7)	intron (NM_001306069, intron 1 of 7)	2079.0	NM_001306069	72674.0	Mm.259976	NM_028320	ENSMUSG00000026457	Adipor1	2810031L11Rik|ACDCR1|CGI-45|Paqr1	adiponectin receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46934259-1	chr19	46934159	46934359	+	889.1666869999999	f0_balb.idr	intron (NM_029810, intron 2 of 17)	L1ME1|LINE|L1	28092.0	NM_029810	76952.0	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95065738-3	chr3	95065661	95065861	+	714.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293707, intron 10 of 14)	intron (NM_001293707, intron 10 of 14)	-23147.0	NM_008951	19185.0	Mm.2261	NM_008951	ENSMUSG00000005625	Psmd4	Af1|Mcb1|angiocidin	proteasome (prosome, macropain) 26S subunit, non-ATPase, 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134796584-4	chr6	134796480	134796680	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_151455, exon 1 of 2)	non-coding (NR_151455, exon 1 of 2)	930.0	NR_151455	105242798.0	Mm.398227	NR_151454		1700055D16Rik	-	RIKEN cDNA 1700055D16 gene	ncRNA	4.18029866558639	4.33429992954348	3.94801252118099	4.14182156772696	3.97194909720958	4.62347994196552	3.25354811139144	3.7883986429357	-0.219325412170891	0.637120027240311	0.982417279970648
Merged-chr16-27374278-4	chr16	27374165	27374365	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4026.0	NM_198166	224065.0	Mm.326918	NM_198166	ENSMUSG00000056423	Uts2b	Gm538|U2B|Urp|Uts2d	urotensin 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-119549485-1	chr2	119549385	119549585	+	626.0	f1_balb.idr	intron (NM_019769, intron 1 of 6)	B1F|SINE|Alu	1778.0	NM_019769	56398.0	Mm.214765	NM_019769	ENSMUSG00000014077	Chp1	1500003O03Rik|AA960066|AI046351|Cahp|Chp|Sid470p|p24|vac	calcineurin-like EF hand protein 1	protein-coding	0.326100118537855	0.36088260446087	0.349719021332784	0.340956451598861	1.02542094114114	1.2306885877864	1.45727568904352	0.3424970149804	4.69644400282507	0.0105213248938929	0.11284403105804
Merged-chr7-44357863-2	chr7	44357763	44357963	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001034115, exon 25 of 25)	3' UTR (NM_001034115, exon 25 of 25)	17167.0	NM_027049	69349.0	Mm.358922	NM_027049	ENSMUSG00000008028	1700008O03Rik	-	RIKEN cDNA 1700008O03 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-90224058-4	chr5	90223937	90224137	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033310)	promoter-TSS (NM_001033310)	-41.0	NM_001163456	231430.0	Mm.319697	NM_001033310	ENSMUSG00000035505	Cox18	BC038311	cytochrome c oxidase assembly protein 18	protein-coding	6.56120021231042	6.45819807462083	6.65636670948064	6.9518835351749	6.173099555396	6.69265735265236	7.1028993857467	6.98710980396563	0.114282530744606	0.606471215223739	0.974576632476413
Merged-chr11-117663648-4	chr11	117663552	117663752	+	922.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198022, intron 1 of 21)	intron (NM_198022, intron 1 of 21)	9363.0	NM_198022	217351.0	Mm.40272	NM_198022	ENSMUSG00000025571	Tnrc6c	9930033H14Rik|mKIAA1582	trinucleotide repeat containing 6C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-59531328-2	chr11	59531228	59531428	+	642.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	-10241.0	NM_001359638	216799.0	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-136804423-4	chr6	136804338	136804538	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175652)	promoter-TSS (NM_175652)	-7.0	NM_175652	320332.0	Mm.246720	NM_175652	ENSMUSG00000096010	Hist4h4	B130044J01Rik	histone cluster 4, H4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-30972138-3	chr17	30972007	30972207	+	649.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177465, intron 5 of 21)	intron (NM_177465, intron 5 of 21)	17424.0	NM_177465	52020.0	Mm.25923	NM_177465	ENSMUSG00000054134	Umodl1	D17Ertd488e	uromodulin-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-103048505-4	chr14	103048402	103048602	+	838.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008392, intron 1 of 4)	intron (NM_008392, intron 1 of 4)	1490.0	NM_008392	16365.0	Mm.4662	NM_008392	ENSMUSG00000022126	Acod1	AI323667|CAD|Irg1	aconitate decarboxylase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119909637-3	chr11	119909528	119909728	+	828.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_039557, intron 2 of 2)	LTR41B|LTR|ERVL	-4182.0	NM_001085498	208092.0	Mm.306673	NM_001085498	ENSMUSG00000025371	Chmp6	2400004G01Rik	charged multivesicular body protein 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-61694502-2	chr10	61694402	61694602	+	652.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-1012.0	NM_001272090	71767.0	Mm.71514	NM_027912	ENSMUSG00000020087	Tysnd1	1300019N10Rik	trypsin domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-84798779-4	chr2	84798628	84798828	+	973.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019949)	promoter-TSS (NM_019949)	-100.0	NM_019949	56791.0	Mm.38261	NM_019949	ENSMUSG00000027078	Ube2l6	2810489I21Rik|RIG-B|UBCH8|Ubce8|Ubcm8	ubiquitin-conjugating enzyme E2L 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-26622879-3	chr19	26622753	26622953	+	654.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011416, intron 2 of 32)	intron (NM_011416, intron 2 of 32)	17693.0	NM_011416	67155.0	Mm.491146	NM_011416	ENSMUSG00000024921	Smarca2	2610209L14Rik|SNF2alpha|Snf2l2|brahma|brm	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-72326956-1	chr8	72326856	72327056	+	579.0	f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	7894.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	-2.18233058068552	-2.15536956715525	-2.16352280018114	-2.04193253143548	-2.18043796738662	-2.15360272754651	-2.16167708693786	-2.16902129354933	-0.683654500252594	0.846597994014493	1
Merged-chr9-65585364-2	chr9	65585264	65585464	+	606.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-1796.0	NR_151702	208084.0	Mm.211032	NM_172453	ENSMUSG00000041064	Pif1	4631410M14|AI449441	PIF1 5'-to-3' DNA helicase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-35504958-2	chr2	35504858	35505058	+	707.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43509.0	NM_001145821	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-24587011-3	chr1	24586815	24587015	+	825.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007733, intron 1 of 50)	CpG	522.0	NM_007733	12823.0	Mm.329196	NM_007733	ENSMUSG00000026141	Col19a1	-	collagen, type XIX, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-5804615-4	chr2	5804472	5804672	+	973.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356502, intron 8 of 11)	intron (NM_001356502, intron 8 of 11)	-40462.0	NM_016918	53893.0	Mm.251904	NM_016918	ENSMUSG00000025817	Nudt5	-	nudix (nucleoside diphosphate linked moiety X)-type motif 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-112278504-2	chr5	112278404	112278604	+	969.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001326590, intron 1 of 5)	ID_B1|SINE|B4	1813.0	NM_009419	22022.0	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-60839007-3	chr2	60838918	60839118	+	775.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001141932, intron 2 of 14)	intron (NM_001141932, intron 2 of 14)	42420.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-4508142-4	chr2	4508031	4508231	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 5 of 23)	intron (NM_001177843, intron 5 of 23)	-51623.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-94207417-4	chr16	94207317	94207517	+	796.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360045, intron 6 of 10)	MTB_Mm|LTR|ERVL-MaLR	82874.0	NM_001360045	110948.0	Mm.30921	NM_139145	ENSMUSG00000040820	Hlcs	410I21.SP6|D16Jhu34	holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-60701975-4	chr13	60701784	60701984	+	968.15625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 3 of 26)	intron (NM_134062, intron 3 of 26)	84480.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-27174710-4	chr8	27174603	27174803	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080813)	promoter-TSS (NM_001080813)	-57.0	NM_001080813	75767.0	Mm.205335	NM_029423	ENSMUSG00000031488	Rab11fip1	2010200K21Rik|4833414G05Rik|Rcp	RAB11 family interacting protein 1 (class I)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-38644451-4	chr15	38644341	38644541	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17463.0	NM_025494	66335.0	Mm.276618	NM_025494	ENSMUSG00000022295	Atp6v1c1	1700025B18Rik|U13839	ATPase, H+ transporting, lysosomal V1 subunit C1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71492097-2	chr8	71491997	71492197	+	733.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_032544, exon 8 of 9)	exon (NM_032544, exon 8 of 9)	3994.0	NM_032544	70359.0	Mm.142112	NM_032544	ENSMUSG00000007610	Gtpbp3	2410009F13Rik|AI607903	GTP binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-104850193-2	chr2	104850093	104850293	+	700.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178695)	promoter-TSS (NM_178695)	-343.0	NM_178695	228413.0	Mm.259609	NM_178695	ENSMUSG00000027171	Prrg4	9930111I18Rik|TMG4	proline rich Gla (G-carboxyglutamic acid) 4 (transmembrane)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-6163190-4	chr18	6163104	6163304	+	965.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27106.0	NM_001039692	75415.0	Mm.239675	NM_029277	ENSMUSG00000041225	Arhgap12	2810011M08Rik	Rho GTPase activating protein 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-95500911-4	chr10	95500856	95501056	+	856.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359476, intron 1 of 5)	intron (NM_001359476, intron 1 of 5)	993.0	NM_001359476	67270.0	Mm.30008	NM_026065	ENSMUSG00000062981	Mrpl42	2700009F22Rik|2900055D03Rik|D10Ertd322e|HSPC204|L31mt|L42mt|MRP-L31|MRP-L42|MRP-S32|PTD007|Rpml31|S32mt	mitochondrial ribosomal protein L42	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-79668681-2	chr1	79668581	79668781	+	633.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183027, intron 1 of 4)	intron (NM_183027, intron 1 of 4)	3291.0	NM_183027	252903.0	Mm.32409	NM_183027	ENSMUSG00000054702	Ap1s3	1190009B22|Jr2|[s]3A	adaptor-related protein complex AP-1, sigma 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-78312099-3	chr10	78312005	78312205	+	911.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053014, intron 2 of 9)	intron (NM_053014, intron 2 of 9)	28102.0	NR_106119	102465765.0		NR_106119	ENSMUSG00000098885	Mir7659	Gm27433|mmu-mir-7659	microRNA 7659	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141410249-2	chr7	141410149	141410349	+	642.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_172116, intron 4 of 7)	intron (NM_172116, intron 4 of 7)	3876.0	NM_172116	213350.0	Mm.290953	NM_172116	ENSMUSG00000051007	Gatd1	BC023835|D230016J19Rik|Pddc1	glutamine amidotransferase like class 1 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-15720918-8	chr6	15720866	15721066	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175088, intron 1 of 4)	CpG	305.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-5112633-3	chr6	5112544	5112744	+	980.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181595, intron 8 of 15)	intron (NM_181595, intron 8 of 15)	81302.0	NM_011134	18979.0	Mm.237657	NM_011134	ENSMUSG00000002588	Pon1	Pon	paraoxonase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-167339546-4	chr1	167339413	167339613	+	994.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	-10478.0	NM_019993	56752.0	Mm.292539	NM_019993	ENSMUSG00000026687	Aldh9a1	AA139417|Abaldh|ESTM40|TMABA-DH|Tmabadh	aldehyde dehydrogenase 9, subfamily A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-55208980-4	chr9	55208860	55209060	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028049)	promoter-TSS (NM_028049)	25.0	NM_028049	71999.0	Mm.276429	NM_028049	ENSMUSG00000032309	Fbxo22	0610033L19Rik|1600016C16Rik	F-box protein 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-7863740-4	chr15	7863628	7863828	+	955.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48178.0	NM_001301357	14573.0	Mm.4679	NM_010275	ENSMUSG00000022144	Gdnf	AI385739|ATF	glial cell line derived neurotrophic factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-3355965-4	chr2	3355790	3355990	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145921, intron 3 of 7)	intron (NM_145921, intron 3 of 7)	10679.0	NM_145921	99035.0	Mm.13808	NM_145921	ENSMUSG00000026645	Olah	AI607300|E230009B14Rik|Thedc1	oleoyl-ACP hydrolase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78279618-2	chr15	78279518	78279718	+	831.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5231.0	NR_106137	102465776.0		NR_106137	ENSMUSG00000098996	Mir7676-1	Gm27600|mmu-mir-7676-1	microRNA 7676-1	ncRNA	-0.734697168562934	-1.28094420828655	-1.29131886204401	-1.29984091153697	-1.31008363841169	-1.2786959775384	-1.28897026783925	-1.29831546875223	-2.42902550944018	0.482518537989684	1
Merged-chr17-35321103-2	chr17	35321003	35321203	+	694.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_010390, intron 2 of 7)	CpG-6317	556.0	NM_001358790	15006.0	Mm.466882	NM_010390	ENSMUSG00000079507	H2-Q1	H-2Q1|Q1|Q1b|Q1d|Q1k|Qa-1|Qa1|Qed-1	histocompatibility 2, Q region locus 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-113489797-2	chr6	113489697	113489897	+	659.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_145485, intron 6 of 9)	intron (NR_145485, intron 6 of 9)	6441.0	NR_145485	171508.0	Mm.41593	NM_133930	ENSMUSG00000030284	Creld1	AI843811|i11E7	cysteine-rich with EGF-like domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-84362582-2	chr1	84362482	84362682	+	782.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-77937.0	NM_001003948	98496.0	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4|P-CLI1	phosphotyrosine interaction domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-54899533-2	chr18	54899433	54899633	+	909.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_175751, exon 5 of 10)	exon (NM_175751, exon 5 of 10)	90647.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-149049640-3	chr4	149049515	149049715	+	871.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019781, intron 2 of 8)	intron (NM_019781, intron 2 of 8)	50197.0	NM_019781	56273.0	Mm.184172	NM_019781	ENSMUSG00000028975	Pex14	Pex14p|R75137	peroxisomal biogenesis factor 14	protein-coding	0.841933926357081	0.731067759159137	1.16864122590663	1.13332416673254	1.0820880595962	0.732895510937045	1.17860010347899	1.49464213382639	0.881602129288364	0.542546583167924	0.954935047166076
Merged-chr8-82382486-4	chr8	82382391	82382591	+	999.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001254747, intron 1 of 7)	intron (NM_001254747, intron 1 of 7)	20095.0	NM_001254747	16168.0	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	5.14716375317275	4.41588728417832	4.54883138178011	4.15416013464152	5.1090723591939	3.91924089810358	4.58198660969141	5.00753094845309	0.140271977464262	0.730475737798341	0.998431161219273
Merged-chr9-45274372-3	chr9	45274279	45274479	+	706.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5230.0	NM_001324486	16154.0	Mm.379327	NM_008348	ENSMUSG00000032089	Il10ra	AW553859|CDw210|CDw210a|IL-10R1|IL-10RA|Il10r|mIL-10R	interleukin 10 receptor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-75098027-2	chr8	75097927	75098127	+	735.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010442, intron 3 of 4)	intron (NM_010442, intron 3 of 4)	4409.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-55351920-1	chr4	55351820	55352020	+	698.0	f1_balb.idr	intron (NM_009011, intron 1 of 9)	B1_Mus2|SINE|Alu	1878.0	NM_009011	19359.0	Mm.196846	NM_009011	ENSMUSG00000028426	Rad23b	0610007D13Rik|AV001138|HR23B|mHR23B|p58	RAD23 homolog B, nucleotide excision repair protein	protein-coding	1.59816449983588	1.29057868129709	1.25411839763272	2.00553135961067	1.72195500930692	1.29864797063296	1.26225758188825	2.39705946969198	0.574931001263248	0.610611184860528	0.975183586809945
Merged-chr13-49204513-2	chr13	49204413	49204613	+	582.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_026738, intron 3 of 5)	intron (NM_026738, intron 3 of 5)	11513.0	NM_026738	68480.0	Mm.3336	NM_026738	ENSMUSG00000037960	Card19	1110007C09Rik|AI851695|Bincard	caspase recruitment domain family, member 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-129229250-2	chr6	129229150	129229350	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8795.0	NR_040265	76432.0	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36678525-4	chr18	36678387	36678587	+	929.1749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001083317)	promoter-TSS (NM_001083317)	-728.0	NM_001360989	67843.0	Mm.273350	NM_026404	ENSMUSG00000033272	Slc35a4	2610030J16Rik	solute carrier family 35, member A4	protein-coding	2.58883828897081	2.30686378689097	1.35491542547778	2.15620612712091	2.69623021099871	1.70652180386383	3.67205261673585	2.75049124443008	1.40080799800035	0.11418200291508	0.529895179593269
Merged-chr17-63375005-2	chr17	63374905	63375105	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_015794, intron 5 of 8)	Lx9|LINE|L1	-62032.0	NR_130176	414079.0	Mm.444282	NR_130176	ENSMUSG00000090565	4930405O22Rik	-	RIKEN cDNA 4930405O22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30591692-2	chr7	30591601	30591801	+	665.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_021397, exon 2 of 6)	exon (NM_021397, exon 2 of 6)	1241.0	NM_021397	58206.0	Mm.116789	NM_021397	ENSMUSG00000006310	Zbtb32	4930524C15Rik|FAXF|FAZF|PLZP|Rog|Tzfp	zinc finger and BTB domain containing 32	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78897234-1	chr15	78897134	78897334	+	585.0	f1_c57bl6.idr	Intergenic	Intergenic	-2534.0	NR_133564	20401.0	Mm.4462	NM_009164	ENSMUSG00000022436	Sh3bp1	3BP-1	SH3-domain binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-88211562-2	chr1	88211462	88211662	+	839.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_201645)	promoter-TSS (NM_201645)	-397.0	NM_201645	394436.0	Mm.300095	NM_201645	ENSMUSG00000089960	Ugt1a1	Gnt1|UDPGT 1-1|UGT1A01|Udpgt-1a|UgtBr1	UDP glucuronosyltransferase 1 family, polypeptide A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131061263-2	chr1	131061163	131061363	+	821.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008551, intron 1 of 9)	B1F|SINE|Alu	36580.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-7169469-4	chr17	7169394	7169594	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011299)	promoter-TSS (NM_011299)	-621.0	NM_011299	20112.0	Mm.268383	NM_011299	ENSMUSG00000023809	Rps6ka2	90kDa|D17Wsu134e|Rps6ka-rs1|Rsk3|p90rsk|pp90rsk	ribosomal protein S6 kinase, polypeptide 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-135540470-4	chr1	135540369	135540569	+	972.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173437, intron 1 of 28)	intron (NM_173437, intron 1 of 28)	44886.0	NM_173437	215690.0	Mm.34977	NM_173437	ENSMUSG00000009418	Nav1	9530089B19|9930003A20Rik|C230080M11Rik|Gm38399|Pomfil3|Unc53h1|mKIAA1151|steerin-1	neuron navigator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-27467886-2	chr15	27467786	27467986	+	667.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_020332, intron 1 of 11)	intron (NM_020332, intron 1 of 11)	1209.0	NM_020332	11732.0	Mm.265264	NM_020332	ENSMUSG00000022265	Ank	Ankh|D15Ertd221e|ank|mKIAA1581	progressive ankylosis	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-160887500-4	chr2	160887412	160887612	+	845.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199118)	promoter-TSS (NM_001199118)	-656.0	NM_001199118	64899.0	Mm.292111	NM_022883	ENSMUSG00000027412	Lpin3	9130206L11Rik|AA438110|AV236139|mKIAA4023	lipin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-17989757-2	chr2	17989657	17989857	+	690.099976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7201.0	NM_026627	68231.0	Mm.23887	NM_026627	ENSMUSG00000062651	H2al2a	1700113O17Rik|H2A.Bbd|H2A.L.2|H2afb1|H2al2|TSEG-1|Tseg1	H2A histone family member L2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-97129313-4	chr13	97129214	97129414	+	989.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_021552)	TTS (NM_021552)	8612.0	NM_021552	59050.0	Mm.390634	NM_021552	ENSMUSG00000060739	Nsa2	5730427N09Rik|LNR42|Nsa2p|Tinp1|Yr29	NSA2 ribosome biogenesis homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-26605964-5	chr19	26605925	26606125	+	959.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011416, intron 1 of 32)	CpG	865.0	NM_011416	67155.0	Mm.491146	NM_011416	ENSMUSG00000024921	Smarca2	2610209L14Rik|SNF2alpha|Snf2l2|brahma|brm	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-67606237-4	chr18	67606108	67606308	+	886.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35147.0	NM_001357523	225659.0	Mm.111928	NM_001081073	ENSMUSG00000073542	Cep76	6230425F05Rik|9630013E05	centrosomal protein 76	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-65197465-4	chr16	65197372	65197572	+	888.6904910000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-91688.0	NM_008310	15557.0	Mm.5040	NM_008310	ENSMUSG00000050783	Htr1f	Htr1eb	5-hydroxytryptamine (serotonin) receptor 1F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-10825701-1	chr2	10825601	10825801	+	603.0	f0_balb.idr	Intergenic	Intergenic	307546.0	NR_035418	100316831.0		NR_035418	ENSMUSG00000080594	Mir669h	Mirn669h|mir-669h|mmu-mir-669h	microRNA 669h	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-88372255-4	chr16	88372155	88372355	+	687.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-81990.0	NM_001346964	14805.0	Mm.5134	NM_010348	ENSMUSG00000022935	Grik1	A830007B11Rik|D16Ium24|D16Ium24e|GluK1|GluK5|Glur-5|Glur5|Glurbeta1	glutamate receptor, ionotropic, kainate 1	protein-coding	1.88052454201976	1.4169671240121	2.3366752560288	3.2266753352727	2.28262137004967	2.12844801305968	2.59182803105113	2.86268509644047	0.164744556687818	0.855218458437507	0.998431161219273
Merged-chr5-108369702-2	chr5	108369602	108369802	+	727.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18671.0	NM_008806	18587.0	Mm.1372	NM_008806	ENSMUSG00000029491	Pde6b	Pdeb|r|rd|rd-1|rd1|rd10	phosphodiesterase 6B, cGMP, rod receptor, beta polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-6643911-2	chr13	6643811	6644011	+	607.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019703, intron 1 of 21)	intron (NM_019703, intron 1 of 21)	4860.0	NM_019703	56421.0	Mm.273874	NM_019703	ENSMUSG00000021196	Pfkp	1200015H23Rik|9330125N24Rik|ATP-PFK|PFK-C|PFK-P	phosphofructokinase, platelet	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-9350032-4	chr3	9349934	9350134	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53044.0	NR_015499	320088.0	Mm.212908	NR_015499	ENSMUSG00000097365	C030034L19Rik	A130044O20Rik	RIKEN cDNA C030034L19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28204472-2	chr17	28204372	28204572	+	839.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_172617, exon 14 of 15)	exon (NM_172617, exon 14 of 15)	-3306.0	NM_027185	23853.0	Mm.204731	NM_027185	ENSMUSG00000002257	Def6	2410003F05Rik|6430538D02Rik|AV094905|Ibp|Slat|Slat2|Slat6	differentially expressed in FDCP 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-72839407-2	chr17	72839307	72839507	+	613.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357370, intron 1 of 2)	intron (NM_001357370, intron 1 of 2)	1359.0	NM_001357371	383295.0	Mm.277533	NM_027166	ENSMUSG00000039770	Ypel5	2310076K21Rik|CGI-127	yippee like 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-77213821-3	chr1	77213713	77213913	+	949.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	282955.0	NR_105770	102465180.0		NR_105770	ENSMUSG00000099141	Mir6352	Gm27481|mmu-mir-6352	microRNA 6352	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-135094966-2	chr1	135094883	135095083	+	893.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033409, intron 1 of 17)	intron (NM_001033409, intron 1 of 17)	10293.0	NM_001033409	329252.0	Mm.279594	NM_001033409	ENSMUSG00000042793	Lgr6	A530037C04Rik|D830026M09	leucine-rich repeat-containing G protein-coupled receptor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71660833-6	chr8	71660771	71660971	+	800.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029873, intron 8 of 41)	intron (NM_001029873, intron 8 of 41)	10886.0	NM_001029873	382018.0	Mm.334606	NM_001029873	ENSMUSG00000034799	Unc13a	2410078G03Rik|Munc13-1	unc-13 homolog A (C. elegans)	protein-coding	3.02213839433185	3.28919799991037	3.3555005823398	3.09328600436367	2.96091836573428	3.49198705329006	3.45954515920753	2.79322641347441	0.0219045005120876	0.970578458471877	0.998431161219273
Merged-chr13-48572314-4	chr13	48572185	48572385	+	777.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34013.0	NR_029725	387244.0		NR_029725	ENSMUSG00000065421	Mirlet7a-1	Let-7a|Mirnlet7a|Mirnlet7a-1|let-7a-1	microRNA let7a-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-170864911-2	chr1	170864811	170865011	+	794.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081304, intron 1 of 15)	MTD|LTR|ERVL-MaLR	2860.0	NM_001081304	226641.0	Mm.377046	NM_001081304	ENSMUSG00000026663	Atf6	9130025P16Rik|9630036G24|AA789574|Atf6alpha|ESTM49	activating transcription factor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-63929313-4	chr7	63929169	63929369	+	975.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021366, intron 1 of 1)	intron (NM_021366, intron 1 of 1)	9646.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-6292556-4	chr11	6292446	6292646	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252288)	promoter-TSS (NM_001252288)	-12.0	NM_001252288	18293.0	Mm.276348	NM_010956	ENSMUSG00000020456	Ogdh	2210403E04Rik|2210412K19Rik|AA409584|d1401|mKIAA4192	oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-87738192-1	chr16	87738092	87738292	+	570.0	f0_balb.idr	Intergenic	Intergenic	39238.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-12184604-3	chr5	12184480	12184680	+	865.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5b|LINE|L1	-198586.0	NM_028882	108151.0	Mm.89313	NM_028882	ENSMUSG00000040254	Sema3d	4631426B19Rik	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4154792-2	chr19	4154692	4154892	+	972.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_011778)	TTS (NM_011778)	146.0	NM_016933	19265.0	Mm.271937	NM_016933	ENSMUSG00000045826	Ptprcap	AI605264|CD-45-AP|LPAP|LSM-1	protein tyrosine phosphatase, receptor type, C polypeptide-associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-40469141-4	chr12	40469028	40469228	+	968.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	23075.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-90772454-4	chr5	90772356	90772556	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019932)	promoter-TSS (NM_019932)	21.0	NM_019932	56744.0	Mm.332490	NM_019932	ENSMUSG00000029373	Pf4	Cxcl4|Scyb4	platelet factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-86416476-4	chr1	86416377	86416577	+	857.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9852.0	NM_027966	71863.0	Mm.179627	NM_027966	ENSMUSG00000036574	Tex44	1700019O17Rik	testis expressed 44	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129036253-10	chr4	129036165	129036365	+	808.616638	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER5A|DNA|hAT-Charlie	-22006.0	NM_029219	75234.0	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-45004156-2	chr10	45004056	45004256	+	879.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63058.0	NM_011156	19072.0	Mm.10281	NM_011156	ENSMUSG00000019849	Prep	AI047692|AI450383|D10Wsu136e|PEP|Pop	prolyl endopeptidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-116059290-4	chr9	116059188	116059388	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028638, intron 14 of 14)	B3A|SINE|B2	116075.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-55600009-4	chr13	55599911	55600111	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001311137, exon 1 of 5)	5' UTR (NM_001311137, exon 1 of 5)	115.0	NM_001311137	218271.0	Mm.139825	NM_146045	ENSMUSG00000021504	B4galt7	-	xylosylprotein beta1,4-galactosyltransferase, polypeptide 7 (galactosyltransferase I)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-35248427-2	chr18	35248327	35248527	+	640.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009818, intron 13 of 17)	intron (NM_009818, intron 13 of 17)	-33403.0	NM_178005	107065.0	Mm.39900	NM_178005	ENSMUSG00000071862	Lrrtm2	AI851755|BB129880|C630011A14Rik|mKIAA0416	leucine rich repeat transmembrane neuronal 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129628451-2	chr2	129628334	129628534	+	643.766663	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291019, intron 7 of 7)	intron (NM_001291019, intron 7 of 7)	32972.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	-0.348770917087869	-0.977870260089896	-0.989819320508362	-0.991994201976819	-0.84630853562483	-0.975263707176863	-0.987175509973415	-0.991614408081669	-1.97168503206029	0.529110519935892	1
Merged-chr11-107382989-2	chr11	107382889	107383089	+	553.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 1 of 9)	intron (NR_153311, intron 1 of 9)	87731.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115067648-2	chr11	115067548	115067748	+	904.8333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5609.0	NM_172050	217306.0	Mm.222667	NM_172050	ENSMUSG00000048498	Cd300e	BC034097|CLM2|Cd300le|TREM5	CD300E molecule	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30469257-2	chr2	30469157	30469357	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4942.0	NM_030244	72500.0	Mm.295464	NM_030244	ENSMUSG00000089762	Ier5l	2610524G09Rik	immediate early response 5-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-36549231-3	chr8	36549147	36549347	+	634.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	60056.0	NM_176952	319582.0	Mm.180924	NM_176952	ENSMUSG00000039620	6430573F11Rik	Kiaa1456|TRM9L|Trmt9b	RIKEN cDNA 6430573F11 gene	protein-coding	0.312134951779786	-0.232846316688484	-0.237451935763067	-0.241004019387997	-0.246021936696481	0.390832236257762	-0.0555656806158891	-0.240383553511079	0.527528473588328	0.827557351461928	1
Merged-chr12-108630177-3	chr12	108630081	108630281	+	617.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163395, intron 1 of 12)	intron (NM_001163395, intron 1 of 12)	-5572.0	NM_001163396	14026.0	Mm.238841	NM_007965	ENSMUSG00000021262	Evl	AI528774|b2b2600Clo	Ena-vasodilator stimulated phosphoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-73603979-4	chr13	73603859	73604059	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146047)	promoter-TSS (NM_146047)	-43.0	NM_146047	218335.0	Mm.30099	NM_146047	ENSMUSG00000021610	Clptm1l	C130052I12Rik|Crr9	CLPTM1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-94502308-4	chr16	94502208	94502408	+	964.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007834, intron 5 of 7)	intron (NM_007834, intron 5 of 7)	24321.0	NM_007834	13185.0	Mm.7472	NM_007834	ENSMUSG00000022898	Dscr3	AW538125|Dcra	DSCR3 arrestin fold containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122344484-2	chr5	122344384	122344584	+	892.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144912, intron 4 of 10)	intron (NM_144912, intron 4 of 10)	9711.0	NM_144912	231724.0	Mm.255587	NM_144912	ENSMUSG00000038569	Rad9b	A630082N15Rik|BC021784	RAD9 checkpoint clamp component B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-73953453-2	chr17	73953353	73953553	+	819.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3257.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-82691606-2	chr18	82691506	82691706	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177832, intron 1 of 29)	intron (NM_177832, intron 1 of 29)	1128.0	NM_177832	329002.0	Mm.34438	NM_177832	ENSMUSG00000041258	Zfp236	AI447957|Gm335	zinc finger protein 236	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117878365-2	chr10	117878265	117878465	+	850.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32391.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-21791200-1	chr13	21791100	21791300	+	857.0	f1_c57bl6.idr	Intergenic	Intergenic	3712.0	NM_001290466	319188.0	Mm.264645	NM_178202	ENSMUSG00000069308	Hist1h2bp	-	histone cluster 1, H2bp	protein-coding	-1.107570214359	-1.08653447535648	-1.09741130683982	-0.688779236681923	-0.841983873845991	-1.08417742060026	-1.09494903060535	-1.10420625070982	-0.619773806471497	0.851573714113283	1
Merged-chr1-64482300-4	chr1	64482240	64482440	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger15a|DNA|TcMar-Tigger	-50464.0	NM_009952	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-58103973-4	chr11	58103874	58104074	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356477)	promoter-TSS (NM_001356477)	4.0	NM_026949	69125.0	Mm.28910	NM_026949	ENSMUSG00000020515	Cnot8	1500015I04Rik|1810022F04Rik|AA536816|AU015770|AU043059	CCR4-NOT transcription complex, subunit 8	protein-coding	5.65896810250599	5.62990292605596	5.60764471401859	6.441869857287	5.97593802337437	5.12606690892987	5.20774157963642	6.05760042884803	-0.244267920810035	0.427485124946633	0.902392427013133
Merged-chr10-67113534-4	chr10	67113436	67113636	+	935.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13722.0	NM_207221	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-118100798-4	chr10	118100693	118100893	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40994.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	5.65064152574261	5.2303618826574	5.44009834117457	5.18628351833599	5.76178598592973	5.14338684748182	6.00443695438532	5.33197714789787	0.241841175379599	0.408338371660813	0.892181486875301
Merged-chr5-146738777-2	chr5	146738677	146738877	+	986.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011669, intron 8 of 8)	ORR1D1|LTR|ERVL-MaLR	56179.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-44215804-4	chr5	44215689	44215889	+	875.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173764, intron 2 of 13)	intron (NM_173764, intron 2 of 13)	10817.0	NM_173764	231225.0	Mm.30688	NM_173764	ENSMUSG00000046985	Tapt1	4932414K18Rik	transmembrane anterior posterior transformation 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-101598383-2	chr3	101598283	101598483	+	739.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144900, intron 1 of 22)	intron (NM_144900, intron 1 of 22)	6324.0	NM_144900	11928.0	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-159201424-4	chr1	159201302	159201502	+	969.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	-30798.0	NM_001360878	26374.0	Mm.328135	NM_011931	ENSMUSG00000040782	Cop1	AI316802|C80879|Rfwd2	COP1, E3 ubiquitin ligase	protein-coding	0.685782162743639	1.42204758290716	0.391913588045222	0.38398977453326	0.372630847910226	0.975968658472263	1.05598761124331	0.385380681964609	-0.313688305455173	0.860574583701732	1
Merged-chr12-4188388-4	chr12	4188296	4188496	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159537, intron 3 of 21)	intron (NM_001159537, intron 3 of 21)	45569.0	NM_134046	52504.0	Mm.70546	NM_134046	ENSMUSG00000020652	Cenpo	2810429O05Rik|8430427C03Rik|D12Ertd482e	centromere protein O	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-32005504-1	chr4	32005404	32005604	+	798.0	f1_balb.idr	intron (NM_009316, intron 13 of 16)	intron (NM_009316, intron 13 of 16)	41397.0	NM_172688	26409.0	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding	1.11531490884624	0.617602270292791	0.858528046194985	0.581856944237678	1.26485576102778	2.48612548962707	0.602182438316016	1.20693965229625	2.74913704223811	0.0585192054087326	0.357370254408199
Merged-chr4-103114337-4	chr4	103114252	103114452	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146254)	promoter-TSS (NM_146254)	-38.0	NM_027696	71148.0	Mm.288721	NM_027696	ENSMUSG00000028522	Mier1	4933425I22Rik|5830411K19Rik|er1	MEIR1 treanscription regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-6649311-2	chr13	6649211	6649411	+	818.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291071)	promoter-TSS (NM_001291071)	-540.0	NM_001291071	56421.0	Mm.273874	NM_019703	ENSMUSG00000021196	Pfkp	1200015H23Rik|9330125N24Rik|ATP-PFK|PFK-C|PFK-P	phosphofructokinase, platelet	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-53369250-2	chr19	53369150	53369350	+	677.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001008543, intron 3 of 5)	intron (NM_001008543, intron 3 of 5)	20791.0	NM_001356986	76479.0	Mm.313687	NM_172429	ENSMUSG00000025024	Smndc1	-	survival motor neuron domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-53861181-2	chr11	53861081	53861281	+	552.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1925.0	NR_033332	622459.0	Mm.479656	NR_033332	ENSMUSG00000081769	Gm12216	602-19-115	predicted gene 12216	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-37687565-2	chr3	37687465	37687665	+	610.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36795.0	NM_198657	381438.0	Mm.490549	NM_198657	ENSMUSG00000058174	Gm5148	EG381438	predicted gene 5148	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-43882286-4	chr5	43882192	43882392	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007646, intron 1 of 7)	PB1D10|SINE|Alu	13483.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-74493998-4	chr13	74493894	74494094	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146231)	promoter-TSS (NM_146231)	-44.0	NM_146231	235956.0		NM_146231	ENSMUSG00000069208	Zfp825	-	zinc finger protein 825	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59653063-4	chr15	59652969	59653169	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144549, intron 2 of 2)	intron (NM_144549, intron 2 of 2)	4415.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-105261484-2	chr4	105261384	105261584	+	835.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	104137.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-155404837-4	chr2	155404730	155404930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001242558, intron 9 of 12)	MIRb|SINE|MIR	22974.0	NM_178111	68728.0	Mm.293605	NM_178111	ENSMUSG00000038375	Trp53inp2	1110029F20Rik|Tp53inp2	transformation related protein 53 inducible nuclear protein 2	protein-coding	5.95453842997168	5.66395981583327	6.18767285413742	6.10326506991628	6.00941574503919	5.92039092365829	6.36310454088787	6.30659285544076	0.185511031075416	0.424122106795286	0.90112899491419
Merged-chr2-72474301-3	chr2	72474238	72474438	+	837.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1881.0	NM_025866	66953.0	Mm.270676	NM_025866	ENSMUSG00000055612	Cdca7	2310021G01Rik|AU044109|JPO1	cell division cycle associated 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-13469094-3	chr10	13469073	13469273	+	840.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195065, intron 1 of 12)	intron (NM_001195065, intron 1 of 12)	5223.0	NM_001195065	215789.0	Mm.283359	NM_001033257	ENSMUSG00000062866	Phactr2	AV158170|BC012871	phosphatase and actin regulator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-64919111-2	chr1	64919011	64919211	+	603.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039493, intron 3 of 7)	intron (NM_001039493, intron 3 of 7)	37713.0	NM_001039493	241075.0	Mm.239534	NM_175509	ENSMUSG00000051344	Plekhm3	9430067K14Rik|A230102O09Rik|AI449570|DAPR|Plekhm1l	pleckstrin homology domain containing, family M, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-44350319-2	chr17	44350219	44350419	+	782.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28|LTR|ERVL	161747.0	NM_172621	224796.0	Mm.37666	NM_172621	ENSMUSG00000023959	Clic5	5730531E12Rik|B330005L24|Gm322|jbg|nmf318	chloride intracellular channel 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-39960287-4	chr10	39960193	39960393	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001173500)	promoter-TSS (NM_001173500)	-140.0	NM_001173500	100041085.0	Mm.332530	NM_001173500	ENSMUSG00000071335	Mfsd4b3	G630090E17Rik|Naglt1c	major facilitator superfamily domain containing 4B3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-148539869-2	chr6	148539769	148539969	+	774.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	74440.0	NR_045867	622319.0	Mm.491049	NM_001037912	ENSMUSG00000070995	Gm6313	EG622319	predicted gene 6313	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-88910189-3	chr18	88910107	88910307	+	752.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16000.0	NM_018821	54607.0	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-77911599-4	chr14	77911493	77911693	+	959.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029495, intron 1 of 11)	intron (NM_029495, intron 1 of 11)	7354.0	NM_029495	108670.0	Mm.68134	NM_029495	ENSMUSG00000022014	Epsti1	2310046K10Rik|5033415K03Rik|BRESI1	epithelial stromal interaction 1 (breast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118463100-2	chr11	118463000	118463200	+	943.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8105.0	NR_045902	100126224.0	Mm.441989	NR_045902	ENSMUSG00000086514	Gm11747	-	predicted gene 11747	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99040002-2	chr15	99039902	99040102	+	635.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	10111.0	NM_009448	22146.0	Mm.88212	NM_009448	ENSMUSG00000043091	Tuba1c	M[a]6|Tuba6	tubulin, alpha 1C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-136600234-2	chr1	136600134	136600334	+	911.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24667.0	NM_177643	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135406369-4	chr4	135406267	135406467	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8140.0	NM_145555	230822.0	Mm.35548	NM_145555	ENSMUSG00000043924	Ncmap	A330049M08Rik|AA545175|Mp11	noncompact myelin associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-102447660-3	chr11	102447533	102447733	+	984.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199200)	promoter-TSS (NM_199200)	30.0	NM_199200	217219.0	Mm.259924	NM_199200	ENSMUSG00000034685	Fam171a2	-	family with sequence similarity 171, member A2	protein-coding	4.10727908860581	3.86745632353135	3.45858957043773	4.49352955822056	3.87595681652678	5.01615014291094	3.67925906127301	4.28524682384205	0.362444107938995	0.451985607031733	0.91820577601875
Merged-chr9-53667090-2	chr9	53667002	53667202	+	1000.0	f0_balb.idr|f0_c57.idr	exon (NM_027807, exon 1 of 19)	exon (NM_027807, exon 1 of 19)	405.0	NM_001161618	75717.0	Mm.218910	NM_027807	ENSMUSG00000032030	Cul5	4921514I20Rik|8430423K24Rik|AI852817|C030032G03Rik|C330021I08Rik|VACM-1|VACM1	cullin 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-44144474-4	chr19	44144374	44144574	+	946.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028607, intron 2 of 4)	intron (NM_028607, intron 2 of 4)	1972.0	NM_028607	73689.0	Mm.124685	NM_028607	ENSMUSG00000057506	Bloc1s2	2410089B13Rik|BLOS2|Bloc1s2a	biogenesis of lysosomal organelles complex-1, subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-80180676-2	chr12	80180576	80180776	+	924.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134156, intron 11 of 20)	URR1B|DNA|hAT-Charlie	-47832.0	NR_033514	69548.0	Mm.269712	NR_033514		2310015A10Rik	5330419I17Rik	RIKEN cDNA 2310015A10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-91606818-3	chr12	91606726	91606926	+	759.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16339.0	NM_175335	83602.0	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-57300968-2	chr17	57300868	57301068	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163816, intron 9 of 25)	B4|SINE|B4	21868.0	NM_001163815	22324.0	Mm.248172	NM_011691	ENSMUSG00000034116	Vav1	Vav|vav-T	vav 1 oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96501001-4	chr3	96500904	96501104	+	920.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24181.0	NM_027126	69585.0	Mm.171314	NM_027126	ENSMUSG00000038403	Hfe2	2310035L15Rik|5230400G09Rik|AI414844|AI789733|DL-M|HJV|Rgmc|hemojuvelin	hemochromatosis type 2 (juvenile)	protein-coding	2.01158078948507	2.41121134900038	3.13404035393898	2.51894882169422	2.29711877963613	3.10361667900491	2.48771624082102	2.7387386173337	0.207688729382343	0.786483463077675	0.998431161219273
Merged-chr3-100998247-6	chr3	100998104	100998304	+	949.361084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167906, intron 8 of 8)	(GA)n|Simple_repeat|Simple_repeat	-28541.0	NM_001013026	74044.0	Mm.270961	NM_001013026	ENSMUSG00000033222	Ttf2	4632434F22Rik|8030447N19|AV218430	transcription termination factor, RNA polymerase II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5805699-2	chr19	5805599	5805799	+	571.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3027.0	NR_002847	72289.0	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-34868493-4	chr6	34868399	34868599	+	957.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197986, intron 1 of 1)	intron (NM_197986, intron 1 of 1)	5353.0	NM_197986	68487.0	Mm.248440	NM_197986	ENSMUSG00000057137	Tmem140	1110007F12Rik	transmembrane protein 140	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-102014611-2	chr7	102014511	102014711	+	861.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_010531)	TTS (NM_010531)	3544.0	NM_010531	16068.0	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-58919881-3	chr2	58919791	58919991	+	764.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362394, intron 10 of 13)	L2a|LINE|L2	164707.0	NM_029692	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-94097872-2	chr13	94097772	94097972	+	822.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172589, intron 1 of 3)	intron (NM_172589, intron 1 of 3)	40076.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-144907186-4	chr7	144907081	144907281	+	783.454163	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7919.0	NM_001357868	72284.0	Mm.273049	NM_028184	ENSMUSG00000031072	Oraov1	2210010N10Rik|TAOS1	oral cancer overexpressed 1	protein-coding	-0.353550320492004	0.263218747486544	-0.345122754069776	-0.186591710857126	0.120193752024059	-0.340075416517544	-0.344215155687017	-0.347740880391181	-0.738515793738747	0.768181060199247	1
Merged-chr5-64156396-4	chr5	64156292	64156492	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3868.0	NM_019636	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-6271646-2	chr2	6271546	6271746	+	999.666626	f1_balb.idr|f1_c57bl6.idr	intron (NR_040333, intron 3 of 6)	intron (NR_040333, intron 3 of 6)	-51111.0	NM_001080548	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-109555951-2	chr5	109555866	109556066	+	975.4833369999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164735, intron 5 of 7)	CpG-11313	3027.0	NM_016715	57914.0	Mm.35771	NM_016715	ENSMUSG00000033467	Crlf2	CRLM2|Ly114|Tpte2|Tslpr	cytokine receptor-like factor 2	protein-coding	-0.248029180862873	-0.462871789904957	-0.465549917471796	-0.21136798597455	-0.149719833677074	-0.46226345267701	-0.312586797841943	-0.467237655064139	0.0195302293680607	0.993682292547299	1
Merged-chr7-111121576-2	chr7	111121476	111121676	+	807.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_015573, intron 1 of 2)	intron (NR_015573, intron 1 of 2)	1099.0	NR_015573	75479.0	Mm.381620	NR_015573	ENSMUSG00000110424	1700012D14Rik	-	RIKEN cDNA 1700012D14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27377124-2	chr2	27377024	27377224	+	716.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_133905, intron 1 of 29)	intron (NR_133905, intron 1 of 29)	50484.0	NR_133905	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-20978070-2	chr9	20977970	20978170	+	844.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-1277.0	NM_010333	14739.0	Mm.46493	NM_010333	ENSMUSG00000043895	S1pr2	1100001A16Rik|Edg5|Gpcr13|H218|LPb2|S1P2	sphingosine-1-phosphate receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-92335306-4	chr13	92335191	92335391	+	987.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311120, intron 8 of 23)	intron (NM_001311120, intron 8 of 23)	-19492.0	NM_010049	13361.0	Mm.23695	NM_010049	ENSMUSG00000021707	Dhfr	8430436I03Rik|AA607882|AI662710|AW555094	dihydrofolate reductase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-110796803-4	chr7	110796693	110796893	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009667, intron 6 of 14)	intron (NM_009667, intron 6 of 14)	24189.0	NM_009667	11717.0	Mm.3238	NM_009667	ENSMUSG00000005686	Ampd3	-	adenosine monophosphate deaminase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-55003156-2	chr13	55003056	55003256	+	796.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153131, intron 11 of 15)	intron (NM_153131, intron 11 of 15)	17663.0	NM_001206390	212032.0	Mm.267479	NM_001033245	ENSMUSG00000025877	Hk3	HK III|HK-III	hexokinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-77968811-2	chr17	77968711	77968911	+	645.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-231437.0	NM_015800	50766.0	Mm.311912	NM_015800	ENSMUSG00000024074	Crim1	AU015004	cysteine rich transmembrane BMP regulator 1 (chordin like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-43824382-2	chr1	43824282	43824482	+	666.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026430, intron 1 of 14)	Lx8|LINE|L1	3326.0	NM_026430	67883.0	Mm.387202	NM_026430	ENSMUSG00000057363	Uxs1	1600025I13Rik|AI451869|AI649125|AW550562	UDP-glucuronate decarboxylase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-62602838-4	chr11	62602809	62603009	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_030738)	promoter-TSS (NR_030738)	32.0	NR_030738	69221.0	Mm.270874	NR_030738	ENSMUSG00000086841	2410006H16Rik	-	RIKEN cDNA 2410006H16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-55379918-1	chr6	55379818	55380018	+	553.0	f0_balb.idr	intron (NM_001003685, intron 4 of 12)	intron (NM_001003685, intron 4 of 12)	3623.0	NM_001003685	14602.0	Mm.89928	NM_001003685	ENSMUSG00000004654	Ghrhr	Ghrfr|lit|little	growth hormone releasing hormone receptor	protein-coding	2.30425884672805	1.89796399581946	1.84260634233527	2.32441456745234	2.22828448762152	2.48740962787273	2.29321687532904	2.52669539460028	0.662329191268203	0.431254014796151	0.904679012727573
Merged-chr7-46615800-4	chr7	46615727	46615927	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013789, intron 7 of 10)	MIR3|SINE|MIR	23980.0	NM_013789	27414.0	Mm.76659	NM_013789	ENSMUSG00000030839	Sergef	DelGEF|Gef|Gnef|Gnefr	secretion regulating guanine nucleotide exchange factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-17004170-2	chr7	17004070	17004270	+	622.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_011155)	TTS (NM_011155)	9582.0	NM_001101535	434130.0	Mm.459162	NM_001101535	ENSMUSG00000041117	Ccdc8	-	coiled-coil domain containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78352368-4	chr15	78352286	78352486	+	938.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3787.0	NR_106137	102465776.0		NR_106137	ENSMUSG00000098996	Mir7676-1	Gm27600|mmu-mir-7676-1	microRNA 7676-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-144735424-2	chr5	144735324	144735524	+	757.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_177735)	TTS (NM_177735)	26154.0	NM_177735	243339.0	Mm.126793	NM_177735	ENSMUSG00000043388	Tmem130	BC067004|C130036G08	transmembrane protein 130	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-103891023-4	chr14	103890957	103891157	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46581.0	NM_001136061	13618.0	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-96433907-3	chr13	96433807	96434007	+	949.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042714, intron 8 of 13)	intron (NM_001042714, intron 8 of 13)	37253.0	NM_001042714	271144.0	Mm.470057	NM_001042714	ENSMUSG00000047117	Ankdd1b	9330128J19Rik	ankyrin repeat and death domain containing 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120417242-2	chr8	120417142	120417342	+	752.083313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-71624.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-79139032-2	chr8	79138932	79139132	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001294279, intron 8 of 14)	RSINE1|SINE|B4	109551.0	NM_026315	67687.0	Mm.178707	NM_026315	ENSMUSG00000031682	1700011L22Rik	-	RIKEN cDNA 1700011L22 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-87452164-2	chr11	87452064	87452264	+	638.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199293, intron 2 of 30)	intron (NM_001199293, intron 2 of 30)	24573.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44799361-3	chr9	44799234	44799434	+	883.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357383)	promoter-TSS (NM_001357383)	-87.0	NM_001357383	71687.0	Mm.41409	NM_027865	ENSMUSG00000002032	Tmem25	0610039J01Rik|AI429491	transmembrane protein 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-129499798-3	chr6	129499725	129499925	+	845.388916	f0_balb.idr|f1_balb.idr	intron (NM_138648, intron 3 of 7)	intron (NM_138648, intron 3 of 7)	7340.0	NM_138648	108078.0	Mm.293626	NM_138648	ENSMUSG00000030162	Olr1	LOX-1|SR-EI|Scare1	oxidized low density lipoprotein (lectin-like) receptor 1	protein-coding	1.75484183625314	1.02285003983403	1.46273704506619	1.21961075033244	1.88016885319787	2.25215417607352	2.71975412406264	0.979360270658757	1.96915659491607	0.0923232132366293	0.470077818980346
Merged-chr2-30078153-4	chr2	30078036	30078236	+	851.525024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153805)	promoter-TSS (NM_153805)	-562.0	NM_153805	263803.0	Mm.233843	NM_153805	ENSMUSG00000026785	Pkn3	AW209115|BC034126	protein kinase N3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-130350449-2	chr1	130350349	130350549	+	743.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72375.0	NR_151525	102640368.0		NR_151525	ENSMUSG00000087691	Gm15674	-	predicted gene 15674	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-80170134-4	chr18	80170068	80170268	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-16071.0	NR_131039	105246506.0	Mm.392326	NR_131039		LOC105246506	-	uncharacterized LOC105246506	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-48788984-4	chr7	48788899	48789099	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028031)	promoter-TSS (NM_028031)	-4.0	NM_028031	243983.0	Mm.279116	NM_028031	ENSMUSG00000030471	Zdhhc13	2410004E01Rik|C530010M18|HIP3RP|Hip14l|kojak|skc4	zinc finger, DHHC domain containing 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-87098247-3	chr9	87098148	87098348	+	619.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46058.0	NM_001177731	244958.0	Mm.335337	NM_001101482	ENSMUSG00000042761	Mrap2	BB633055	melanocortin 2 receptor accessory protein 2	protein-coding	-0.0823142937122682	-0.549845457380941	-0.55368058233593	-0.556639056964938	-0.560819091796635	0.084296907995445	-0.552834770402048	-0.556122246928774	0.564731168875851	0.841006618404496	1
Merged-chr18-12925967-3	chr18	12925852	12926052	+	946.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207530, intron 4 of 27)	intron (NM_207530, intron 4 of 27)	15889.0	NM_207530	64291.0	Mm.259470	NM_020573	ENSMUSG00000044252	Osbpl1a	G430090F17Rik|Gm753|ORP-1|Osbpl1b	oxysterol binding protein-like 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-44107454-4	chr19	44107303	44107503	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007700)	promoter-TSS (NM_007700)	74.0	NM_007700	12675.0	Mm.3996	NM_007700	ENSMUSG00000025199	Chuk	AI256658|Chuk1|Fbx24|Fbxo24|IKBKA|IKK alpha|IKK1|Ikka|NFKBIKA	conserved helix-loop-helix ubiquitous kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-44406972-2	chr19	44406872	44407072	+	969.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009127, intron 1 of 5)	URR1B|DNA|hAT-Charlie	737.0	NM_009127	20249.0	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-155357507-4	chr2	155357424	155357624	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001004721)	promoter-TSS (NM_001004721)	-100.0	NM_001004721	228812.0	Mm.5434	NM_001004721	ENSMUSG00000038383	Pigu	5430426F17Rik|BC028278|Cdc91l1	phosphatidylinositol glycan anchor biosynthesis, class U	protein-coding	5.86275125975315	6.36584361682365	5.8719309331873	6.73283510730685	5.77472213213176	6.0285096007614	6.52886183153738	6.23812938805103	-0.096137329876055	0.712937357478979	0.998431161219273
Merged-chr16-59475076-1	chr16	59474976	59475176	+	750.0	f1_balb.idr	intron (NM_025910, intron 1 of 9)	intron (NM_025910, intron 1 of 9)	3301.0	NM_025910	67014.0	Mm.289150	NM_025910	ENSMUSG00000022724	Riox2	1810047J07Rik|2410057H13Rik|3830408E23Rik|AI449204|Mina	ribosomal oxygenase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-125061139-3	chr8	125061067	125061267	+	851.194458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_174854, intron 1 of 12)	RLTR40|LTR|ERVK	6972.0	NM_174854	244667.0	Mm.233504	NM_170596	ENSMUSG00000043051	Disc1	-	disrupted in schizophrenia 1	protein-coding	2.25399603144632	2.56883294766404	2.29241948053684	2.54368892211012	0.90949483992611	1.00687592418408	0.976882597907403	0.950068691469203	-5.73257075239056	1.29405122616161e-05	0.000570809801892904
Merged-chr13-5592639-4	chr13	5592526	5592726	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	265466.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-32935775-4	chr5	32935725	32935925	+	910.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360014, intron 24 of 40)	intron (NM_001360014, intron 24 of 40)	72104.0	NM_001170567	277854.0	Mm.101524	NM_177786	ENSMUSG00000037426	Depdc5	AV016528	DEP domain containing 5	protein-coding	2.18876007030847	1.4268939387008	2.06227064997672	3.03362466014446	1.2896670235985	1.85332616483274	1.12666577355706	2.01025197244691	-1.75005791760252	0.097947394439176	0.486815591748647
Merged-chr16-87626253-1	chr16	87626153	87626353	+	776.0	f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-72701.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	-0.00637548751165281	-0.147641636778486	0.843766069788312	0.309239351821119	-0.165194400085339	-0.146274380559747	-0.152386087481678	-0.157635226744448	-4.01757716186279	0.0705564640085718	1
Merged-chr17-70713612-1	chr17	70713512	70713712	+	588.0	f1_c57bl6.idr	intron (NM_001360665, intron 9 of 14)	intron (NM_001360665, intron 9 of 14)	133165.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	-0.814646203414956	-0.948132458442233	-0.260580320090758	-0.961569116139344	-0.964955961651228	-0.945393490738569	-0.957910421812185	-0.96115068189259	-3.02226751932349	0.31744843379996	1
Merged-chr11-95011787-2	chr11	95011687	95011887	+	602.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146025, intron 1 of 9)	intron (NM_146025, intron 1 of 9)	1908.0	NM_146025	217125.0	Mm.297199	NM_146025	ENSMUSG00000047181	Samd14	AI839049|AI854782|BC034054	sterile alpha motif domain containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81594394-4	chr15	81594309	81594509	+	860.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177821, intron 1 of 30)	intron (NM_177821, intron 1 of 30)	8195.0	NM_177821	328572.0	Mm.258397	NM_177821	ENSMUSG00000055024	Ep300	A430090G16|A730011L11|KAT3B|p300|p300 HAT	E1A binding protein p300	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-156032050-5	chr4	156031893	156032093	+	901.1333619999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CACG)n|Simple_repeat|Simple_repeat	5671.0	NM_021985	21936.0	Mm.3180	NM_009400	ENSMUSG00000041954	Tnfrsf18	AITR|Gitr	tumor necrosis factor receptor superfamily, member 18	protein-coding	4.03744097044748	4.34001917199878	3.93311809063302	3.69985423225998	3.66682530228271	3.55457001914183	2.07418198371588	3.12706982740302	-1.14605833764136	0.041006307077378	0.288919783065845
Merged-chr7-19890050-2	chr7	19889950	19890150	+	837.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-2085.0	NM_177036	319930.0	Mm.215839	NM_177036	ENSMUSG00000049848	Ceacam19	C130022P09Rik|CEAL1	carcinoembryonic antigen-related cell adhesion molecule 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-69193307-2	chr17	69193207	69193407	+	583.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355736, intron 1 of 21)	RMER17C2|LTR|ERVK	33951.0	NM_001355735	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-129366072-4	chr6	129365971	129366171	+	949.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_177686)	TTS (NM_177686)	15827.0	NM_177686	232413.0	Mm.90241	NM_177686	ENSMUSG00000053063	Clec12a	CLL-1|D230024O04|KLRL1|Micl	C-type lectin domain family 12, member a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120568093-1	chr11	120567993	120568193	+	782.0	f1_c57bl6.idr	intron (NM_011032, intron 3 of 10)	intron (NM_011032, intron 3 of 10)	5160.0	NM_011032	18453.0	Mm.16660	NM_011032	ENSMUSG00000025130	P4hb	ERp59|PDI|Pdia1|Thbp	prolyl 4-hydroxylase, beta polypeptide	protein-coding	0.412865501760858	0.282819892421642	0.275299204349206	0.269466721542481	0.949139541845139	0.937414444912944	0.88483541144058	0.270487597831393	3.55991626381072	0.0630221582942663	1
Merged-chr16-18393219-2	chr16	18393119	18393319	+	858.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001272031, intron 1 of 16)	intron (NM_001272031, intron 1 of 16)	656.0	NM_001272032	11877.0	Mm.293599	NM_033474	ENSMUSG00000000325	Arvcf	-	armadillo repeat gene deleted in velocardiofacial syndrome	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-106819410-2	chr9	106819310	106819510	+	562.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2566.0	NM_001015507	321006.0	Mm.440089	NM_001015507	ENSMUSG00000040325	Dcaf1	AI447437|B930007L02Rik|Vprbp|mKIAA0800	DDB1 and CUL4 associated factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35274886-4	chr17	35274797	35274997	+	974.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11774.0	NM_001267808	14980.0	Mm.439675	NM_001267808		H2-L	H-2L	histocompatibility 2, D region locus L	protein-coding	4.76492564267373	3.54534535879234	4.11111891772689	5.07920596260223	5.08005381158244	3.68552260689695	4.1431941507235	5.2670947937777	0.244285022213665	0.609670306156947	0.974992433107985
Merged-chr14-47626995-1	chr14	47626895	47627095	+	629.0	f0_balb.idr	Intergenic	L1MCa|LINE|L1	-22316.0	NM_001347527	16709.0	Mm.3110	NM_008477	ENSMUSG00000021843	Ktn1	-	kinectin 1	protein-coding	1.51897695414344	1.22148349195052	1.36731423422107	0.958721600813812	1.73355716343259	1.96428739154655	1.98858806194038	1.16613745829039	1.65148880232546	0.166422183165524	0.631860474643107
Merged-chr11-98708722-4	chr11	98708615	98708815	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361995, intron 19 of 25)	L1MB2|LINE|L1	7402.0	NM_009971	12985.0	Mm.1238	NM_009971	ENSMUSG00000038067	Csf3	Csfg|G-CSF|MGI-IG	colony stimulating factor 3 (granulocyte)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-64377960-4	chr1	64377861	64378061	+	996.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-154843.0	NM_009952	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-112860477-3	chr12	112860328	112860528	+	565.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019925, intron 1 of 2)	intron (NM_019925, intron 1 of 2)	488.0	NM_019925	56696.0	Mm.20455	NM_019925	ENSMUSG00000021298	Gpr132	G2a	G protein-coupled receptor 132	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4012029-2	chr19	4011929	4012129	+	760.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133666, intron 1 of 9)	intron (NM_133666, intron 1 of 9)	726.0	NM_133666	17995.0	Mm.29842	NM_133666	ENSMUSG00000037916	Ndufv1	CI-51kD	NADH dehydrogenase (ubiquinone) flavoprotein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34974087-2	chr17	34973987	34974187	+	759.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013558, intron 1 of 1)	intron (NM_013558, intron 1 of 1)	1384.0	NM_013558	15482.0	Mm.14287	NM_013558	ENSMUSG00000007033	Hspa1l	Hsc70t|Msh5	heat shock protein 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-73704375-2	chr15	73704275	73704475	+	825.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173365, intron 1 of 1)	intron (NM_173365, intron 1 of 1)	3130.0	NM_173365	239530.0	Mm.122997	NM_173365	ENSMUSG00000045281	Gpr20	A430106B11Rik	G protein-coupled receptor 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55648841-1	chr14	55648741	55648941	+	552.0	f1_balb.idr	Intergenic	B4|SINE|B4	-1343.0	NM_001253888	71099.0	Mm.171300	NM_027673	ENSMUSG00000007591	Tssk4	1700020B19Rik|4933424F08Rik|TSK-4|TSSK-4	testis-specific serine kinase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-108641187-4	chr12	108641087	108641287	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163396, intron 2 of 14)	intron (NM_001163396, intron 2 of 14)	5434.0	NM_001163396	14026.0	Mm.238841	NM_007965	ENSMUSG00000021262	Evl	AI528774|b2b2600Clo	Ena-vasodilator stimulated phosphoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-105947288-2	chr1	105947188	105947388	+	758.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42994.0	NR_151625	635504.0	Mm.359717	NR_151625		Gm7160	EG635504	predicted gene 7160	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-62687536-3	chr17	62687426	62687626	+	715.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010109, intron 1 of 3)	intron (NM_010109, intron 1 of 3)	193791.0	NM_207654	13640.0	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94472502-2	chr10	94472402	94472602	+	643.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 2 of 4)	MER58B|DNA|hAT-Charlie	-42355.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16192550-4	chr7	16192425	16192625	+	907.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17130.0	NR_102730	17537.0	Mm.360516	NM_008627	ENSMUSG00000041420	Meis3	AI573393|Mrg2	Meis homeobox 3	protein-coding	1.59425082268893	2.34119611070722	1.51697444325903	1.82788606827445	2.28377169009815	2.56387187906809	1.89197001682073	2.20898828254684	1.03877162327275	0.266841601300777	0.769853847164169
Merged-chr16-36817512-4	chr16	36817410	36817610	+	982.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134111, intron 2 of 5)	intron (NM_134111, intron 2 of 5)	-8805.0	NM_001113405	106389.0	Mm.432078	NM_134111	ENSMUSG00000022838	Eaf2	AW048865|FESTA-L|FESTA-S|Festa|Traits|U19	ELL associated factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-53773321-1	chr1	53773221	53773421	+	630.0	f1_c57bl6.idr	intron (NM_133810, intron 2 of 7)	intron (NM_133810, intron 2 of 7)	11894.0	NM_133810	98267.0	Mm.25559	NM_133810	ENSMUSG00000026094	Stk17b	3110009A03Rik|AI120141|Drak2	serine/threonine kinase 17b (apoptosis-inducing)	protein-coding	2.2422531889178	1.41427975413131	2.8075773472809	2.19166538403718	1.88215671749801	1.15043338167678	1.91920552139408	1.09762716663855	-1.79187978920513	0.102765164829932	0.498911430117154
Merged-chr18-35751678-3	chr18	35751507	35751707	+	690.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11053.0	NM_001289592	72512.0	Mm.45995	NM_028261	ENSMUSG00000024349	Tmem173	2610307O08Rik|ERIS|MPYS|Mita|STING	transmembrane protein 173	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-64375888-4	chr13	64375792	64375992	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5372.0	NM_009984	13039.0	Mm.930	NM_009984	ENSMUSG00000021477	Ctsl	1190035F06Rik|CatL|Ctsl1|MEP|fs|nkt	cathepsin L	protein-coding	4.52920344086217	4.37691940224036	4.34857052300087	3.80782079829175	4.16069169533199	4.00238281843173	3.94698127464799	4.30616698883022	-0.238577776561147	0.568327912595534	0.962718661854691
Merged-chr9-66985458-2	chr9	66985358	66985558	+	900.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-9974.0	NM_030717	80907.0	Mm.157882	NM_030717	ENSMUSG00000032370	Lactb	LACT-1|Lact1|Mrpl56	lactamase, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-100833562-4	chr6	100833480	100833680	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_182939)	promoter-TSS (NM_182939)	-58.0	NM_182939	232314.0	Mm.27223	NM_182939	ENSMUSG00000052144	Ppp4r2	BE691708|C230060M08Rik	protein phosphatase 4, regulatory subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-73286806-4	chr5	73286700	73286900	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2616.0	NR_040687	72276.0	Mm.271215	NR_040687	ENSMUSG00000100175	1700025M24Rik	-	RIKEN cDNA 1700025M24 gene	ncRNA	1.29169533128067	1.70571154764286	0.883356000273748	1.68747672629677	1.17511986310858	1.1241228293005	1.09378586143293	1.69720348960341	-0.506974550000389	0.688526343778827	0.996533206832645
Merged-chr2-33977760-2	chr2	33977660	33977860	+	640.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-89814.0	NM_175184	72543.0	Mm.254914	NM_175184	ENSMUSG00000038740	Mvb12b	2610200O14Rik|2610528K11Rik|AI414895|Fam125b	multivesicular body subunit 12B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133609906-4	chr4	133609810	133610010	+	815.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001017968, intron 7 of 7)	intron (NM_001017968, intron 7 of 7)	-7742.0	NM_018754	55948.0	Mm.44482	NM_018754	ENSMUSG00000047281	Sfn	Er|Mme1|Ywhas	stratifin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-85270766-2	chr11	85270666	85270866	+	858.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	35600.0	NR_028329	654810.0	Mm.209580	NR_028329	ENSMUSG00000085628	Appbp2os	D630032N06Rik	amyloid beta precursor protein (cytoplasmic tail) binding protein 2, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-78885184-3	chr11	78885111	78885311	+	669.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16|LTR|ERVK	-35576.0	NM_010927	18126.0	Mm.2893	NM_010927	ENSMUSG00000020826	Nos2	MAC-NOS|NOS-II|Nos-2|Nos2a|i-NOS|iNOS	nitric oxide synthase 2, inducible	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-79016228-2	chr12	79016222	79016422	+	720.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9045.0	NM_178745	268567.0	Mm.341747	NM_178745	ENSMUSG00000046157	Tmem229b	6330442E10Rik|9830138K24|AU019070	transmembrane protein 229B	protein-coding	-1.0681082143308	-1.04886107507579	-1.05973340131571	-0.907451226913994	-0.701148355677491	-1.04650499662461	-0.888885679039412	-1.06479483623061	1.58107579894084	0.599668871214823	1
Merged-chr14-54651741-1	chr14	54651641	54651841	+	719.5	f1_c57bl6.idr	exon (NM_001085472, exon 3 of 13)	exon (NM_001085472, exon 3 of 13)	1230.0	NR_038053	75913.0	Mm.474799	NR_038053		4930579G18Rik	-	RIKEN cDNA 4930579G18 gene	ncRNA	1.40453616062686	1.49636260081476	2.16960634748794	0.674021612768302	0.653610687614446	0.709558241102152	0.691954777495323	1.51199333364645	-2.11495749335296	0.163921002030725	0.627319302752023
Merged-chr11-115177975-4	chr11	115177862	115178062	+	852.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012030, intron 3 of 5)	intron (NM_012030, intron 3 of 5)	9354.0	NM_025400	66176.0	Mm.86823	NM_025400	ENSMUSG00000015542	Nat9	1110028N05Rik	N-acetyltransferase 9 (GCN5-related, putative)	protein-coding	1.53052524842347	1.21999344153214	1.18887008598295	1.78300483533739	2.43226380372631	2.45984723389684	2.56345353318134	2.63842027162652	2.98173896112508	0.003810837260367	0.0541307325768152
Merged-chr18-50053948-3	chr18	50053848	50054048	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_155293)	promoter-TSS (NR_155293)	-286.0	NR_155293	102635912.0	Mm.440627	NR_155293		C030005K06Rik	-	RIKEN cDNA C030005K06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-122290386-2	chr3	122290286	122290486	+	760.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3317.0	NR_030439	791077.0		NR_030439	ENSMUSG00000076456	Mir760	Mirn760|mir-760|mmu-mir-760	microRNA 760	ncRNA	-1.18832717429738	-1.16380929885254	-0.856565824811958	-1.18328408639367	-1.18787580914644	-1.16149229066421	-0.849604865165746	-1.18171197755832	0.0406512889656815	0.990321405100139	1
Merged-chr11-59193895-1	chr11	59193795	59193995	+	543.0	f1_c57bl6.idr	Intergenic	Intergenic	-1943.0	NM_008193	14923.0	Mm.3624	NM_008193	ENSMUSG00000020444	Guk1	AA409738|AL033299|AL033300|AV026611|Gmk|Guk-1	guanylate kinase 1	protein-coding	-1.84303373260285	-1.81303463126392	-1.82210660711932	-1.82955859819738	-1.84092785115721	-1.81106869625141	-1.8200529106377	-1.54273750312762	1.50114612804783	0.670102668014672	1
Merged-chr6-116767879-2	chr6	116767779	116767979	+	713.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51121.0	NM_178768	319776.0	Mm.133120	NM_178768	ENSMUSG00000048108	Tmem72	C230095G01Rik	transmembrane protein 72	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-80744425-2	chr13	80744325	80744525	+	633.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-138959.0	NR_153410	105171.0	Mm.423137	NM_001042591	ENSMUSG00000074794	Arrdc3	AI450344|mKIAA1376	arrestin domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-17416336-4	chr10	17416227	17416427	+	837.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F1|LTR|ERVL-MaLR	-306901.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-79400356-4	chr15	79400269	79400469	+	941.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172608, intron 1 of 8)	intron (NM_172608, intron 1 of 8)	2550.0	NM_001253817	223693.0	Mm.323358	NM_172608	ENSMUSG00000009035	Tmem184b	2610507A11|4732495E13Rik	transmembrane protein 184b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-161070776-4	chr1	161070686	161070886	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_131028)	promoter-TSS (NR_131028)	19.0	NR_131029	70454.0	Mm.248212	NM_027429	ENSMUSG00000026708	Cenpl	2610300B10Rik|AW121806|AW550697|CENP-L	centromere protein L	protein-coding	8.76727291691363	8.78586574413436	8.92895082488765	8.4624378162656	8.79183623100329	8.88919035903124	8.97836013703241	8.79014414626247	0.120827889898813	0.29194141818041	0.79619180224168
Merged-chr19-23520787-1	chr19	23520687	23520887	+	593.0	f0_c57.idr	Intergenic	L3|LINE|CR1	-72465.0	NM_174857	71738.0	Mm.50841	NM_174857	ENSMUSG00000033207	Mamdc2	1200015L10Rik|AI591564|mamcan	MAM domain containing 2	protein-coding	-0.141829273550191	0.088504900946227	0.0478440435480954	-0.390938065858789	-0.39499671845873	-0.383458948084095	-0.387229725240037	-0.390435101765643	-3.47483381442825	0.160691619857378	1
Merged-chr7-35646778-2	chr7	35646678	35646878	+	559.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019746, intron 1 of 5)	intron (NM_019746, intron 1 of 5)	704.0	NM_019746	56330.0	Mm.371609	NM_019746	ENSMUSG00000030417	Pdcd5	2200003D22Rik|AA408513|Tfar19	programmed cell death 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27057116-4	chr17	27057034	27057234	+	952.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080553)	promoter-TSS (NM_080553)	-170.0	NM_080553	16440.0	Mm.458106	NM_080553	ENSMUSG00000042644	Itpr3	IP3R 3|Ip3r3|Itpr-3|tf	inositol 1,4,5-triphosphate receptor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91486247-2	chr16	91486147	91486347	+	812.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010508, intron 1 of 10)	intron (NM_010508, intron 1 of 10)	1032.0	NM_010508	15975.0	Mm.502	NM_010508	ENSMUSG00000022967	Ifnar1	Ifar|Ifnar|Ifrc|Infar	interferon (alpha and beta) receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26649701-3	chr17	26649592	26649792	+	772.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026170, intron 9 of 9)	intron (NM_026170, intron 9 of 9)	-26704.0	NM_025272	11974.0	Mm.22602	NM_025272	ENSMUSG00000015575	Atp6v0e	Atp6k|Atp6v0e1|M9.2	ATPase, H+ transporting, lysosomal V0 subunit E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117150646-4	chr11	117150545	117150745	+	887.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001166506, exon 12 of 16)	exon (NM_001166506, exon 12 of 16)	35473.0	NM_001166506	74136.0	Mm.272312	NM_028777	ENSMUSG00000020823	Sec14l1	1200017E04Rik|2810012L19Rik|Naa-35	SEC14-like lipid binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-133419587-2	chr1	133419487	133419687	+	630.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011439, intron 1 of 13)	intron (NM_011439, intron 1 of 13)	4625.0	NM_011439	20668.0	Mm.8575	NM_011439	ENSMUSG00000070643	Sox13	AA407916|AW259412|AW540933|Sox-13	SRY (sex determining region Y)-box 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-38395311-4	chr16	38395202	38395402	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_134102)	TTS (NM_134102)	33112.0	NM_022318	64082.0	Mm.390856	NM_022318	ENSMUSG00000022803	Popdc2	AV006127|Pop2	popeye domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-32226502-4	chr11	32226396	32226596	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010822)	promoter-TSS (NM_010822)	-9.0	NM_010822	268395.0	Mm.263161	NM_010822	ENSMUSG00000020287	Mpg	9830006D05|AI326268|APNG|Aag|Mid1	N-methylpurine-DNA glycosylase	protein-coding	4.04715746619988	3.57981959219419	2.33505463908457	4.24762017501823	4.46067697204105	3.69946604699795	3.27975838393783	4.07039366984686	0.309509436018533	0.589733341288235	0.968909160413033
Merged-chr4-46087699-2	chr4	46087600	46087800	+	732.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_021883, intron 4 of 9)	intron (NM_021883, intron 4 of 9)	48478.0	NM_021883	21916.0	Mm.249594	NM_021883	ENSMUSG00000028328	Tmod1	E-Tmod|Tmod	tropomodulin 1	protein-coding	0.47826933474994	0.21838417100043	0.553366819917906	0.20585586137606	0.198087791058229	0.980801458959197	0.816444471163745	0.206813020313566	1.46441540793786	0.452444164799806	1
Merged-chr4-3724832-4	chr4	3724672	3724872	+	987.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 1 of 12)	(GA)n|Simple_repeat|Simple_repeat	9808.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129820710-4	chr4	129820605	129820805	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164745)	promoter-TSS (NM_001164745)	-3.0	NM_001164745	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-25562874-3	chr13	25562767	25562967	+	958.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-292871.0	NM_009513	22360.0	Mm.4766	NM_009513	ENSMUSG00000048978	Nrsn1	Neurensin-1|Neuro-p24|Vmp	neurensin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-71027097-4	chr2	71026994	71027194	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145524, intron 1 of 9)	RLTR30B_MM|LTR|ERV1	-8720.0	NM_001110512	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-131923168-2	chr4	131923068	131923268	+	710.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001128606)	TTS (NM_001128606)	1397.0	NM_001201367	623230.0	Mm.421179	NM_001201367	ENSMUSG00000070720	Tmem200b	EG623230	transmembrane protein 200B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36066427-1	chr1	36066327	36066527	+	631.0	f0_balb.idr	Intergenic	Intergenic	-1973.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124834699-4	chr6	124834554	124834754	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_013538)	TTS (NM_013538)	4478.0	NM_013538	14793.0	Mm.285723	NM_013538	ENSMUSG00000023505	Cdca3	2410005A12Rik|C8|Grcc8|Tome-1	cell division cycle associated 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-100674155-4	chr5	100673955	100674155	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027978, exon 1 of 7)	exon (NM_027978, exon 1 of 7)	201.0	NM_027978	71883.0	Mm.260661	NM_027978	ENSMUSG00000029319	Coq2	2310002F18Rik|PHB:PPT	coenzyme Q2 4-hydroxybenzoate polyprenyltransferase	protein-coding	2.61795539593789	4.15023415358802	2.73320768059175	3.38054472397879	2.74679427801925	2.16850346478912	3.43209860942374	2.0176529867019	-1.0889793531871	0.140169551394198	0.584431299471601
Merged-chr1-136142528-3	chr1	136142435	136142635	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039472, intron 1 of 34)	intron (NM_001039472, intron 1 of 34)	11145.0	NR_153829	16565.0	Mm.276135	NM_019962	ENSMUSG00000041642	Kif21b	2610511N21Rik|mKIAA0449	kinesin family member 21B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-40848147-1	chr3	40848047	40848247	+	619.0	f0_balb.idr	intron (NR_038067, intron 1 of 5)	intron (NR_038067, intron 1 of 5)	1148.0	NR_038067	100039027.0	Mm.482948	NR_038067		Gm2011	-	predicted gene 2011	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-140950747-2	chr7	140950647	140950847	+	591.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053088)	promoter-TSS (NM_053088)	-508.0	NM_053088	73835.0	Mm.389989	NM_053088	ENSMUSG00000025489	Ifitm5	1110003J06Rik|AW213665|Bril|DSPA1|Hrmp1|Hrtm1	interferon induced transmembrane protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-21091186-4	chr2	21091094	21091294	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	114171.0	NM_027728	71233.0	Mm.27658	NM_027728	ENSMUSG00000026679	Enkur	4933434I06Rik|AU016229	enkurin, TRPC channel interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-134362931-2	chr1	134362831	134363031	+	655.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020588)	promoter-TSS (NM_020588)	-925.0	NR_151737	57439.0	Mm.393140	NM_020588	ENSMUSG00000042305	Tmem183a	1300007B12Rik|1700020N19Rik|Tmem183	transmembrane protein 183A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-86582676-4	chr1	86582602	86582802	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172974)	promoter-TSS (NM_172974)	83.0	NM_001360816	18582.0	Mm.12925	NM_008801	ENSMUSG00000026239	Pde6d	AI841218|PrBP/delta	phosphodiesterase 6D, cGMP-specific, rod, delta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-181842460-4	chr1	181842358	181842558	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133815)	promoter-TSS (NM_133815)	-57.0	NM_133815	98386.0	Mm.4538	NM_133815	ENSMUSG00000004880	Lbr	AI505894|ic	lamin B receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76242618-2	chr15	76242518	76242718	+	931.3333130000001	f1_balb.idr|f1_c57bl6.idr	exon (NM_001163575, exon 4 of 11)	exon (NM_001163575, exon 4 of 11)	822.0	NM_001163576	671535.0	Mm.373750	NM_001163575	ENSMUSG00000063268	Parp10	-	poly (ADP-ribose) polymerase family, member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-39200101-3	chr12	39199989	39200189	+	725.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	416378.0	NM_001163154	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	1.15488482346943	0.778548272277288	1.12007602704002	1.53076828289325	1.16475590107234	0.781064368906486	1.12879242927356	1.54002009347681	0.0345223039148922	0.980115893584684	0.998431161219273
Merged-chr7-27334495-2	chr7	27334395	27334595	+	761.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310678)	promoter-TSS (NM_001310678)	-832.0	NM_001310678	108075.0	Mm.272251	NM_175641	ENSMUSG00000040488	Ltbp4	2310046A13Rik	latent transforming growth factor beta binding protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-89349771-2	chr4	89349685	89349885	+	960.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_132431, intron 2 of 9)	intron (NR_132431, intron 2 of 9)	-38753.0	NM_007670	12579.0	Mm.423094	NM_007670	ENSMUSG00000073802	Cdkn2b	AV083695|INK4b|MTS2|p15|p15(INK4b)|p15INK4b	cyclin dependent kinase inhibitor 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-60070877-4	chr1	60070786	60070986	+	991.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27021.0	NM_021312	57750.0	Mm.281079	NM_021312	ENSMUSG00000026019	Wdr12	4933402C23Rik|Ytm1|Ytm1p	WD repeat domain 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33348192-4	chr16	33348109	33348309	+	813.483337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32527.0	NR_045709	100502742.0	Mm.217880	NR_045709	ENSMUSG00000097318	1700007L15Rik	linc-Iqcg|linc1609	RIKEN cDNA 1700007L15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-29827684-2	chr19	29827584	29827784	+	727.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1N2|LTR|ERVL-MaLR	-14710.0	NM_177721	240614.0	Mm.125503	NM_177721	ENSMUSG00000074909	Ranbp6	C630001B19	RAN binding protein 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-129094617-2	chr6	129094517	129094717	+	758.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153506, intron 3 of 4)	intron (NM_153506, intron 3 of 4)	6286.0	NM_153506	232409.0	Mm.30870	NM_153506	ENSMUSG00000030155	Clec2e	Clra|clr-a	C-type lectin domain family 2, member e	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-34921730-3	chr19	34921627	34921827	+	895.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001362434)	promoter-TSS (NM_001362434)	-631.0	NM_001362434	240641.0	Mm.278471	NM_183046	ENSMUSG00000024795	Kif20b	33cex|C330014J10Rik|MPP1|Mphosph1|magoo	kinesin family member 20B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-120064662-1	chr10	120064562	120064762	+	711.0	f0_balb.idr	intron (NM_001358809, intron 22 of 23)	intron (NM_001358809, intron 22 of 23)	48303.0	NM_080446	117599.0	Mm.214703	NM_080446	ENSMUSG00000020228	Helb	AI447783|D10Ertd664e	helicase (DNA) B	protein-coding	-1.56355737717652	-1.81244775989375	-1.82128546162293	-1.82854501295842	-1.83962066705452	-1.81053259306168	-1.81928479966835	-1.82724555674025	-1.28500227969968	0.715751224811686	1
Merged-chr9-70049975-3	chr9	70049873	70050073	+	745.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR37B|LTR|ERV1	-11885.0	NM_028087	72077.0	Mm.195555	NM_028087	ENSMUSG00000032226	Gcnt3	2010013H22Rik|2210021I22Rik|2210401J11Rik	glucosaminyl (N-acetyl) transferase 3, mucin type	protein-coding	1.41700618015004	1.10653946266591	2.21127814243992	1.05886737507908	2.04240557610477	1.78556058352899	2.71309303594085	1.81152149317634	1.61556677784779	0.148681921021041	0.599939136169878
Merged-chr10-121483824-3	chr10	121483752	121483952	+	845.31665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7602.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-20946416-2	chr17	20946306	20946506	+	811.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016891, intron 1 of 14)	intron (NM_016891, intron 1 of 14)	952.0	NM_016891	51792.0	Mm.294138	NM_016891	ENSMUSG00000007564	Ppp2r1a	6330556D22Rik|PP2A|PR65	protein phosphatase 2, regulatory subunit A, alpha	protein-coding	1.54714779880319	2.28809436975582	0.850126579234574	0.826645286741359	0.791656211656921	2.49594798753961	2.55574505448074	0.830819362444873	0.995584896790107	0.682432040617969	0.995882295196263
Merged-chr7-127896629-2	chr7	127896529	127896729	+	697.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1012.0	NM_178600	27973.0	Mm.29703	NM_178600	ENSMUSG00000096145	Vkorc1	D7Wsu86e	vitamin K epoxide reductase complex, subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-38815153-3	chr12	38815054	38815254	+	819.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163154, intron 2 of 9)	intron (NM_001163154, intron 2 of 9)	31443.0	NM_001163154	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-23598157-3	chr13	23598043	23598243	+	893.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177653, intron 1 of 1)	intron (NM_001177653, intron 1 of 1)	-12173.0	NM_001290530	319179.0	Mm.440391	NM_178194	ENSMUSG00000047246	Hist1h2be	-	histone cluster 1, H2be	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70602466-1	chr8	70602366	70602566	+	774.0	f1_c57bl6.idr	intron (NM_133772, intron 2 of 16)	intron (NM_133772, intron 2 of 16)	5848.0	NM_133772	76900.0	Mm.6667	NM_133772	ENSMUSG00000070003	Ssbp4	1210002E11Rik|AW743380|Sspb4	single stranded DNA binding protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-122048779-2	chr14	122048679	122048879	+	732.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14105.0	NM_001037744	223262.0	Mm.297637	NM_001037744	ENSMUSG00000071229	Timm8a2	-	translocase of inner mitochondrial membrane 8A2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-114702794-4	chr5	114702684	114702884	+	768.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4995.0	NM_029992	77832.0	Mm.239698	NM_029992	ENSMUSG00000002486	Tchp	A930031F18Rik|AV279199	trichoplein, keratin filament binding	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-58246251-4	chr9	58246159	58246359	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008884, intron 2 of 7)	intron (NM_008884, intron 2 of 7)	3527.0	NM_008884	18854.0	Mm.392123	NM_008884	ENSMUSG00000036986	Pml	1200009E24Rik|AI661194|Trim19	promyelocytic leukemia	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128127451-4	chr2	128127365	128127565	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001284410)	promoter-TSS (NM_001284410)	-110.0	NM_001284410	12125.0	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-63410001-3	chr14	63409911	63410111	+	717.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007549, intron 1 of 12)	intron (NM_007549, intron 1 of 12)	7176.0	NM_007549	12143.0	Mm.3962	NM_007549	ENSMUSG00000014453	Blk	-	B lymphoid kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-40612539-2	chr9	40612439	40612639	+	932.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-73425.0	NM_133733	71566.0	Mm.280560	NM_133733	ENSMUSG00000032024	Clmp	9030425E11Rik|ACAM|ASP5|AW557819	CXADR-like membrane protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95739559-4	chr3	95739470	95739670	+	963.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252653)	promoter-TSS (NM_001252653)	-1.0	NM_001252653	13601.0	Mm.3433	NM_007899	ENSMUSG00000028108	Ecm1	AI663821|p85	extracellular matrix protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-171670111-1	chr2	171670011	171670211	+	544.0	f1_c57bl6.idr	Intergenic	Intergenic	292688.0	NR_040509	75655.0	Mm.396203	NR_040509	ENSMUSG00000086823	1700028P15Rik	-	RIKEN cDNA 1700028P15 gene	ncRNA	0.421125782459422	0.661097959318969	1.16674200616156	0.899535637756435	0.422923681625021	0.451560200570099	0.641046290267601	1.30739208054078	-0.226013708788358	0.894451090108581	1
Merged-chr6-83072479-2	chr6	83072379	83072579	+	899.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2254.0	NM_009392	21909.0	Mm.37	NM_009392	ENSMUSG00000068327	Tlx2	Enx|Hox11L.1|Hox11l1|NCX|Ncx1|Tlx1l1|Tlx1l2	T cell leukemia, homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-78600110-4	chr10	78600014	78600214	+	919.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20C2_MM|LTR|ERVK	-8150.0	NM_027875	71709.0	Mm.86439	NM_027875	ENSMUSG00000032714	Syde1	1200008N06Rik|BB043000|mSYD1A	synapse defective 1, Rho GTPase, homolog 1 (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125515675-4	chr6	125515557	125515757	+	959.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20897.0	NM_007657	12527.0	Mm.210676	NM_007657	ENSMUSG00000030342	Cd9	Tspan29	CD9 antigen	protein-coding	4.41354197561754	4.1502276643487	4.37892328883727	4.74124129133951	4.75838422535259	3.8575533927199	3.42481818635938	4.68783821789435	-0.169115560019556	0.702764984056892	0.998431161219273
Merged-chr1-137910452-1	chr1	137910352	137910552	+	739.0	f0_balb.idr	Intergenic	Intergenic	-56003.0	NR_029795	735252.0		NR_029795	ENSMUSG00000065565	Mir181a-1	Mirn181a-1|Mirn213|miR-213|mir-181a-1|mmu-mir-213	microRNA 181a-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-53705709-5	chr9	53705571	53705771	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175562, intron 1 of 1)	CpG	561.0	NM_175562	270160.0	Mm.290285	NM_175562	ENSMUSG00000055069	Rab39	C230094F14Rik|Rab39a	RAB39, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-145823863-3	chr2	145823776	145823976	+	856.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028724, intron 4 of 12)	intron (NM_028724, intron 4 of 12)	37760.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-29869078-4	chr2	29868957	29869157	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207298)	promoter-TSS (NM_207298)	-437.0	NM_207298	99151.0	Mm.296336	NM_207298	ENSMUSG00000039787	Cercam	2600006K01Rik|AL024097|Ceecam1	cerebral endothelial cell adhesion molecule	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-84853908-3	chr15	84853778	84853978	+	928.2666630000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356573, intron 2 of 12)	CpG	1221.0	NM_001356573	271305.0	Mm.101022	NM_001081166	ENSMUSG00000016624	Phf21b	A730032D07Rik	PHD finger protein 21B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-20821782-2	chr1	20821682	20821882	+	632.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1470.0	NM_008563	17215.0	Mm.4502	NM_008563	ENSMUSG00000041859	Mcm3	AL033361|C80350|Mcmd|P1|P1-MCM3|p1.m	minichromosome maintenance complex component 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96082941-3	chr3	96082841	96083041	+	919.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21586.0	NM_001025613	229603.0	Mm.272336	NM_001025613	ENSMUSG00000038495	Otud7b	2900060B22Rik|4930463P07Rik|AI462125|CEZANNE|Trabid2|Za20d1	OTU domain containing 7B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-126019882-2	chr4	126019782	126019982	+	704.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4777.0	NR_045561	12986.0	Mm.271701	NM_007782	ENSMUSG00000028859	Csf3r	Cd114|Csfgr|G-CSF-R|G-CSFR	colony stimulating factor 3 receptor (granulocyte)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-109229929-2	chr13	109229829	109230029	+	770.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011056, intron 3 of 16)	intron (NM_011056, intron 3 of 16)	-94815.0	NR_030644	100124489.0		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-3617363-4	chr7	3617266	3617466	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025348)	promoter-TSS (NM_025348)	-7.0	NM_025348	66091.0	Mm.17851	NM_025348	ENSMUSG00000035674	Ndufa3	1010001M12Rik|1700022J01Rik	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 3	protein-coding	3.44231110902564	3.33941993711528	2.52841677064617	1.74854598561729	3.20168747925046	2.77407558923952	2.7968778768799	1.97755570733721	-0.315085325292682	0.68967153489969	0.996533206832645
Merged-chr5-135743677-2	chr5	135743538	135743738	+	678.5	f0_balb.idr|f1_balb.idr	intron (NM_172541, intron 1 of 11)	intron (NM_172541, intron 1 of 11)	534.0	NM_172541	215210.0	Mm.11688	NM_172541	ENSMUSG00000039886	Tmem120a	2010310D06Rik|Tmpit	transmembrane protein 120A	protein-coding	-0.838934633420242	-0.824100364676822	-0.828899055011733	-0.832611801182901	-0.837980973664903	-0.822862287162962	0.20526103796468	-0.831958143752468	4.03610236483351	0.130863340634291	1
Merged-chr2-32488849-3	chr2	32488741	32488941	+	993.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37371.0	NM_146118	227731.0	Mm.37395	NM_146118	ENSMUSG00000026819	Slc25a25	1110030N17Rik|MCSC|mKIAA1896	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-90136430-2	chr7	90136332	90136532	+	967.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360867, intron 1 of 19)	URR1A|DNA|hAT-Charlie	6219.0	NM_001252520	233489.0	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	0.859187681788407	-0.133800051322142	-0.140463184807609	-0.145650450142976	-0.153052881428165	0.566491012397507	-0.138987825020144	-0.144741255935444	-0.747209891376263	0.75680795318516	1
Merged-chr8-120162674-2	chr8	120162574	120162774	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001163761, exon 12 of 12)	3' UTR (NM_001163761, exon 12 of 12)	14795.0	NM_001033980	436062.0	Mm.334852	NM_001033980	ENSMUSG00000042269	Fam92b	1700120B06Rik	family with sequence similarity 92, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-66088886-4	chr5	66088793	66088993	+	999.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139065, intron 2 of 6)	intron (NM_139065, intron 2 of 6)	9286.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	2.44915609511843	3.08726824559381	3.07274081986795	1.97716421377094	2.21508392727437	3.69812219537968	2.80225674406214	2.60010747400246	0.41985027353435	0.580950112029532	0.966599221005409
Merged-chr6-113418791-3	chr6	113418737	113418937	+	894.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001346511, exon 2 of 9)	exon (NM_001346511, exon 2 of 9)	503.0	NM_001033204	101122.0	Mm.31204	NM_001033204	ENSMUSG00000051169	Rpusd3	AI527266	RNA pseudouridylate synthase domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-63128562-2	chr14	63128462	63128662	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007798, intron 1 of 9)	intron (NM_007798, intron 1 of 9)	6100.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-64115640-1	chr15	64115540	64115740	+	851.3333130000001	f1_balb.idr	intron (NM_010026, intron 25 of 30)	intron (NM_010026, intron 25 of 30)	-55192.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0.15429476369353	0.211258525663815	0.19347756746422	0.179200016202318	0.158101662425018	0.21516129068584	2.02112638530171	1.64927002531845	5.09974573018953	0.133176876806499	0.570764692507331
Merged-chr1-180850887-4	chr1	180850790	180850990	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145943)	promoter-TSS (NM_145943)	-261.0	NM_145943	208768.0	Mm.272625	NM_145943	ENSMUSG00000038806	Sde2	-	SDE2 telomere maintenance homolog (S. pombe)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45278113-2	chr7	45278013	45278213	+	595.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4760.0	NM_001033176	76713.0	Mm.425445	NM_001033176	ENSMUSG00000070568	Slc6a21	1700039E15Rik|Gm19188	solute carrier family 6 member 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-32881657-3	chr19	32881603	32881803	+	735.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	124126.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167949393-4	chr2	167949292	167949492	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011201, intron 1 of 8)	intron (NM_011201, intron 1 of 8)	17065.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123135888-6	chr5	123135843	123136043	+	988.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3314.0	NM_175092	23912.0	Mm.253876	NM_175092	ENSMUSG00000029449	Rhof	AI845056|AV026554|Arhf|Ifld1|Rif	ras homolog family member F (in filopodia)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-66559301-3	chr15	66559208	66559408	+	832.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172514, exon 2 of 10)	exon (NM_172514, exon 2 of 10)	1738.0	NM_172514	213068.0	Mm.132299	NM_172514	ENSMUSG00000036944	Tmem71	AI661017|E430024D12	transmembrane protein 71	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-93680849-3	chr10	93680736	93680936	+	789.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038017, intron 1 of 5)	intron (NR_038017, intron 1 of 5)	2486.0	NR_038017	100504069.0	Mm.391412	NR_038017	ENSMUSG00000085723	Gm15915	-	predicted gene 15915	ncRNA	3.21303697338457	2.92258103309147	3.32152103856466	2.96217947148679	3.42827128393103	3.75232221243336	2.56722397692044	2.62888130253409	0.136581665266797	0.830976140233611	0.998431161219273
Merged-chr8-94364873-4	chr8	94364782	94364982	+	913.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019415, intron 24 of 24)	intron (NM_019415, intron 24 of 24)	-21547.0	NM_001357205	64209.0	Mm.29151	NM_022331	ENSMUSG00000031770	Herpud1	Herp|Mifl|SUP	homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-10835827-4	chr8	10835748	10835948	+	825.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46606.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-38198844-3	chr15	38198764	38198964	+	737.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20339.0	NM_008757	18285.0	Mm.252830	NM_008757	ENSMUSG00000061923	Odf1	-	outer dense fiber of sperm tails 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55808449-2	chr19	55808349	55808549	+	544.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001331146, intron 4 of 14)	RSINE1|SINE|B4	66639.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-43568959-2	chr17	43568854	43569054	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013737, intron 1 of 11)	intron (NM_013737, intron 1 of 11)	503.0	NM_013737	27226.0	Mm.9277	NM_013737	ENSMUSG00000023913	Pla2g7	PAF-AH|R75400	phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	protein-coding	-0.359870506836375	-0.343257754286472	-0.348660337867641	0.668957653895728	-0.358822650241544	-0.122809597687491	-0.347465491144785	-0.165445401592348	-2.03852425544188	0.401973614310534	1
Merged-chr13-81767226-3	chr13	81767103	81767303	+	865.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Charlie8|DNA|hAT-Charlie	-16044.0	NM_007684	12626.0	Mm.12481	NM_007684	ENSMUSG00000021537	Cetn3	MmCEN3	centrin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-54838747-3	chr13	54838669	54838869	+	789.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49364.0	NM_028841	74257.0	Mm.32883	NM_028841	ENSMUSG00000025875	Tspan17	2210021G21Rik|AI047581|Fbxo23|Tm4sf17	tetraspanin 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-88316898-2	chr4	88316798	88316998	+	741.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081184, intron 21 of 43)	L1MCa|LINE|L1	122028.0	NM_025760	66775.0	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-90999941-2	chr1	90999841	91000041	+	687.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111312, intron 1 of 12)	intron (NM_001111312, intron 1 of 12)	1214.0	NM_001111312	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-79133240-3	chr12	79133183	79133383	+	797.027771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009705, intron 2 of 7)	B1_Mur2|SINE|Alu	2495.0	NM_009705	11847.0	Mm.3506	NM_009705	ENSMUSG00000021125	Arg2	AII|AU022422	arginase type II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-127374975-2	chr6	127374875	127375075	+	644.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-67008.0	NR_073373	232386.0	Mm.257367	NR_073373	ENSMUSG00000107153	Gm38404	D130058E03	predicted gene, 38404	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-80655377-4	chr1	80655290	80655490	+	962.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175291, intron 1 of 55)	intron (NM_175291, intron 1 of 55)	9962.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-17558151-3	chr16	17558038	17558238	+	947.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145435, intron 4 of 7)	intron (NM_001145435, intron 4 of 7)	3109.0	NM_029053	74685.0	Mm.38634	NM_029053	ENSMUSG00000022759	Lrrc74b	4930451C15Rik|mCG12354|mCP17390	leucine rich repeat containing 74B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-86134693-1	chr15	86134593	86134793	+	1000.0	f1_c57bl6.idr	intron (NM_172611, intron 17 of 18)	intron (NM_172611, intron 17 of 18)	-51035.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	2.20568572250457	1.00402399654986	0.977347168941308	2.17135582242417	2.54698492928227	1.00988640480948	0.983328556708533	2.27219487098548	0.430486432920136	0.851518349956553	0.998431161219273
Merged-chr7-73527434-4	chr7	73527331	73527531	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081345, intron 2 of 38)	intron (NM_001081345, intron 2 of 38)	14315.0	NM_001081345	244059.0	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-30596336-4	chr16	30596237	30596437	+	906.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3386.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94358884-6	chr10	94358851	94359051	+	918.130981	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 1 of 4)	intron (NM_001359762, intron 1 of 4)	47002.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-78624236-2	chr14	78624136	78624336	+	745.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081336, intron 8 of 29)	intron (NM_001081336, intron 8 of 29)	5054.0	NM_001253766	380921.0	Mm.89591	NM_001081336	ENSMUSG00000034731	Dgkh	5930402B05Rik|D130015C16|DGK	diacylglycerol kinase, eta	protein-coding	-1.39239040096365	-1.50706362993767	-1.51637061241093	-1.52401564492204	-1.25712099376264	-1.5050467680107	-1.51426371558223	-1.52264718775774	0.640753741356348	0.855918148133186	1
Merged-chr4-133197852-3	chr4	133197781	133197981	+	708.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_153423, exon 9 of 9)	3' UTR (NM_153423, exon 9 of 9)	2226.0	NR_105984	102466215.0		NR_105984	ENSMUSG00000099202	Mir7017	Gm27945|mmu-mir-7017	microRNA 7017	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-29805885-6	chr19	29805736	29805936	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172836, exon 1 of 8)	exon (NM_172836, exon 1 of 8)	173.0	NM_172836	240613.0	Mm.313351	NM_172836	ENSMUSG00000046138	9930021J03Rik	Gm9832|mKIAA2026	RIKEN cDNA 9930021J03 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80995895-4	chr7	80995775	80995975	+	797.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178707, intron 1 of 9)	L2c|LINE|L2	2191.0	NM_178707	233410.0	Mm.29525	NM_178707	ENSMUSG00000005621	Zfp592	A730014M16Rik|Znf592	zinc finger protein 592	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-62653255-4	chr13	62653206	62653406	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29124.0	NM_173381	211378.0	Mm.247448	NM_173381	ENSMUSG00000072066	6720489N17Rik	9330128I06	RIKEN cDNA 6720489N17 gene	protein-coding	4.01036959759274	2.62314914306778	3.24764571628353	3.82236329378334	3.89123035551068	4.54276336949989	4.90139605546671	2.78178436913565	0.965016267373063	0.101783360794317	0.495883904768633
Merged-chr8-68908212-1	chr8	68908112	68908312	+	621.0	f1_balb.idr	Intergenic	RMER15|LTR|ERVL	27657.0	NM_008509	16956.0	Mm.1514	NM_008509	ENSMUSG00000015568	Lpl	-	lipoprotein lipase	protein-coding	1.58914928175127	2.55195556162882	2.91255129692852	2.82850454282139	2.14263056694905	3.44292805312156	3.33089958809577	1.90871919201372	0.592452480488448	0.476889301985788	0.927980290875356
Merged-chr11-69982536-1	chr11	69982436	69982636	+	583.0	f0_balb.idr	intron (NM_026017, intron 1 of 7)	intron (NM_026017, intron 1 of 7)	-1301.0	NM_018740	54351.0	Mm.13430	NM_018740	ENSMUSG00000018565	Elp5	Derp6|Rai12	elongator acetyltransferase complex subunit 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-95337445-3	chr11	95337340	95337540	+	915.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172543, intron 1 of 7)	CpG	422.0	NM_172543	215512.0	Mm.262113	NM_172543	ENSMUSG00000038893	Fam117a	5730593F17Rik|AW548096	family with sequence similarity 117, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69113228-2	chr11	69113126	69113326	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7227.0	NM_033041	84653.0	Mm.98505	NM_033041	ENSMUSG00000023781	Hes7	bHLHb37	hes family bHLH transcription factor 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46404384-2	chr8	46404284	46404484	+	567.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66653.0	NM_007981	14081.0	Mm.210323	NM_007981	ENSMUSG00000018796	Acsl1	Acas|Acas1|Acs|FACS|Facl2|LACS 1|LACS1	acyl-CoA synthetase long-chain family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-30003334-4	chr13	30003248	30003448	+	825.979187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17285.0	NM_010093	13557.0	Mm.268356	NM_010093	ENSMUSG00000016477	E2f3	E2F3b|E2f3a	E2F transcription factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81343254-6	chr10	81343106	81343306	+	833.361084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_148951)	promoter-TSS (NM_148951)	60.0	NM_148951	209047.0	Mm.218755	NM_148951	ENSMUSG00000034872	Gipc3	Ahl5|Rgs19ip3	GIPC PDZ domain containing family, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-16180655-4	chr3	16180580	16180780	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MD3|LINE|L1	-2485.0	NM_001358043	229096.0	Mm.23834	NM_172677	ENSMUSG00000047213	Ythdf3	9130022A11Rik	YTH domain family 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150570487-3	chr4	150570387	150570587	+	931.3666380000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 12 of 22)	intron (NM_001085492, intron 12 of 22)	81687.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	2.05333615745505	1.55269587485651	2.11274272424737	1.80796017874172	2.06969222407878	2.31420351416395	2.12877538272147	1.81630003572265	0.521440661600096	0.576093174236733	0.965286201225318
Merged-chr5-120579479-3	chr5	120579364	120579564	+	823.305542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145853, intron 2 of 27)	intron (NM_145853, intron 2 of 27)	9149.0	NM_145853	252972.0	Mm.114054	NM_145853	ENSMUSG00000032741	Tpcn1	5730403B01Rik|Tpc1|mKIAA1169	two pore channel 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-105275353-4	chr4	105275254	105275454	+	875.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	118007.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122893717-3	chr8	122893731	122893931	+	652.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_037865, exon 10 of 14)	non-coding (NR_037865, exon 10 of 14)	45457.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	0.418584503078193	0.17748620200538	0.171763310547249	0.580572096626154	0.16113421563581	0.178777616037766	0.73480615985347	0.691961660980507	0.858664427195968	0.668183051946745	1
Merged-chr1-16220252-3	chr1	16220210	16220410	+	596.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	114428.0	NM_133832	98711.0	Mm.274376	NM_133832	ENSMUSG00000025921	Rdh10	3110069K09Rik|4921506A21Rik|AI875664|AW549993|D1Ertd762e|m366Asp	retinol dehydrogenase 10 (all-trans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-49643925-4	chr18	49643819	49644019	+	913.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	111682.0	NM_001170960	68857.0	Mm.96010	NM_026854	ENSMUSG00000024505	Dtwd2	1190002H09Rik|8030470C17Rik|AI414673|BB115449	DTW domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-30608248-4	chr15	30608130	30608330	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355502, intron 3 of 21)	intron (NM_001355502, intron 3 of 21)	-430896.0	NR_045186	73784.0	Mm.66947	NR_045186	ENSMUSG00000115474	4930430F21Rik	-	RIKEN cDNA 4930430F21 gene	ncRNA	5.46583368191347	5.81507173274888	4.80392516379193	4.76352218605668	4.86398156698182	5.30667942320446	4.48641746451675	4.51232723587226	-0.537374347046346	0.138055726377996	0.579834050787583
Merged-chr11-97412263-4	chr11	97412166	97412366	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37894.0	NM_021493	58996.0	Mm.394118	NM_021493	ENSMUSG00000049807	Arhgap23	A330041B18Rik	Rho GTPase activating protein 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-21236577-4	chr11	21236472	21236672	+	913.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR12D|LTR|ERVK	-2460.0	NM_139061	245944.0	Mm.170103	NM_139061	ENSMUSG00000020128	Vps54	Hcc8|Vps54l|mSLP8|wr	VPS54 GARP complex subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-72412378-1	chr8	72412278	72412478	+	633.0	f1_balb.idr	intron (NM_001122832, intron 1 of 15)	intron (NM_001122832, intron 1 of 15)	9096.0	NM_001122832	13859.0	Mm.288894	NM_007944	ENSMUSG00000006276	Eps15l1	9830147J04Rik|AI593686|Eps15-rs|Eps15R	epidermal growth factor receptor pathway substrate 15-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100159705-4	chr7	100159623	100159823	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026010, exon 1 of 2)	exon (NM_026010, exon 1 of 2)	446.0	NM_026010	67164.0	Mm.46777	NM_026010	ENSMUSG00000030725	Lipt2	2610209A20Rik	lipoyl(octanoyl) transferase 2 (putative)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-79225524-2	chr11	79225424	79225624	+	732.799988	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17500.0	NM_001042565	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36512424-4	chr18	36512308	36512508	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010415, intron 3 of 5)	intron (NM_010415, intron 3 of 5)	3397.0	NM_010415	15200.0	Mm.289681	NM_010415	ENSMUSG00000024486	Hbegf	AW047313|Dtr|Dts|Hegfl	heparin-binding EGF-like growth factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-67386154-4	chr1	67386053	67386253	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	263126.0	NM_001080809	227231.0	Mm.343942	NM_001080809	ENSMUSG00000025991	Cps1	4732433M03Rik|CPS|D1Ucla3	carbamoyl-phosphate synthetase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115326544-4	chr5	115326484	115326684	+	786.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025573)	promoter-TSS (NM_025573)	-593.0	NM_025573	108014.0	Mm.287826	NM_025573	ENSMUSG00000029538	Srsf9	25kDa|2610029M16Rik|SRp30c|Sfrs9	serine/arginine-rich splicing factor 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-17834665-2	chr6	17834565	17834765	+	592.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001289627, exon 3 of 16)	exon (NM_001289627, exon 3 of 16)	85495.0	NM_001083315	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126503536-4	chr7	126503422	126503622	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183020)	promoter-TSS (NM_183020)	-85.0	NM_183020	233871.0	Mm.231450	NM_183020	ENSMUSG00000032637	Atxn2l	A2D|A2LG|A2RP|A2lp|Atxnl2	ataxin 2-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-27408909-4	chr7	27408794	27408994	+	930.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_032610, exon 14 of 36)	exon (NM_032610, exon 14 of 36)	-12341.0	NM_001199236	80297.0	Mm.459123	NM_032610	ENSMUSG00000011751	Sptbn4	1700022P15Rik|5830426A08Rik|ROSA62|SpbIV|Spnb4|dyn|lnd|nmf261|nmf379|qv	spectrin beta, non-erythrocytic 4	protein-coding	2.01722655459925	2.10040694940997	2.4333483544791	2.36533602626457	3.04165326249446	2.53626470509786	1.6643176603434	2.26217055220917	0.552412251906678	0.519913718242688	0.947641799425091
Merged-chr12-52637943-4	chr12	52637834	52638034	+	987.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(A)n|Simple_repeat|Simple_repeat	-35612.0	NR_045910	73278.0	Mm.396209	NR_045910	ENSMUSG00000100315	1700031P21Rik	-	RIKEN cDNA 1700031P21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-32933983-2	chr10	32933883	32934083	+	842.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	-44068.0	NM_001025286	432450.0	Mm.49665	NM_001013411	ENSMUSG00000069670	Nkain2	6330571D19Rik|AW455467|Tcba1	Na+/K+ transporting ATPase interacting 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4475257-4	chr16	4475148	4475348	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	47827.0	NM_001347162	106393.0	Mm.35811	NM_175347	ENSMUSG00000022519	Srl	9830004M20Rik|AW108387|sar	sarcalumenin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30615558-2	chr2	30615458	30615658	+	556.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20514.0	NM_030137	78617.0	Mm.40413	NM_030137	ENSMUSG00000047363	Cstad	9530039B02Rik	CSA-conditional, T cell activation-dependent protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166900982-4	chr2	166900886	166901086	+	982.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5110.0	NM_023565	110750.0	Mm.22417	NM_023565	ENSMUSG00000002718	Cse1l	2610100P18Rik|AA407533|Capts|Cas|Xpo2	chromosome segregation 1-like (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-138924103-2	chr7	138924003	138924203	+	849.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14597.0	NM_009760	12176.0	Mm.378890	NM_009760	ENSMUSG00000078566	Bnip3	Nip3	BCL2/adenovirus E1B interacting protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-25032789-1	chr10	25032689	25032889	+	544.0	f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-105319.0	NM_007482	11846.0	Mm.154144	NM_007482	ENSMUSG00000019987	Arg1	AI|AI256583|Arg-1|PGIF	arginase, liver	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-157134436-2	chr2	157134336	157134536	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001139520, intron 1 of 16)	intron (NM_001139520, intron 1 of 16)	786.0	NM_001139520	56045.0	Mm.248478	NM_018851	ENSMUSG00000027639	Samhd1	E330031J07Rik|Mg11	SAM domain and HD domain, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-84769988-2	chr12	84769888	84770088	+	987.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023409, intron 1 of 3)	intron (NM_023409, intron 1 of 3)	3124.0	NM_023409	67963.0	Mm.282556	NM_023409	ENSMUSG00000021242	Npc2	2700012J19Rik|AA408070|AU045843|HE1	NPC intracellular cholesterol transporter 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-116608594-4	chr7	116608506	116608706	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(A)n|Simple_repeat|Simple_repeat	104237.0	NM_001360375	53322.0	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-101874119-2	chr5	101874019	101874219	+	707.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 45 of 66)	intron (NM_172882, intron 45 of 66)	108989.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-139199279-4	chr4	139199187	139199387	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	5176.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	4.52203086508218	4.60832388378195	3.63393838678208	4.97845459030834	4.518171304266	4.47360949575871	4.39007440690733	4.46627616150833	-0.0745532372368041	0.853861028922887	0.998431161219273
Merged-chr12-95748961-4	chr12	95748862	95749062	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201518, intron 1 of 1)	intron (NM_201518, intron 1 of 1)	56736.0	NM_201518	399558.0	Mm.341948	NM_201518	ENSMUSG00000047414	Flrt2	-	fibronectin leucine rich transmembrane protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-86920704-7	chr3	86920610	86920810	+	906.380981	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001195499, exon 1 of 18)	5' UTR (NM_001195499, exon 1 of 18)	174.0	NM_001195499	70762.0	Mm.44490	NM_027539	ENSMUSG00000028078	Dclk2	6330415M09Rik|AU044875|CL2|CLICK2|Click-II|Dcamkl2	doublecortin-like kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-99124138-1	chr11	99124038	99124238	+	570.0	f1_balb.idr	Intergenic	Intergenic	30939.0	NM_001301713	12775.0	Mm.2932	NM_007719	ENSMUSG00000037944	Ccr7	CC-CKR-7|CCR-7|CD197|Cdw197|Cmkbr7|EBI1|Ebi1h	chemokine (C-C motif) receptor 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-174343696-4	chr2	174343551	174343751	+	976.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077507, intron 5 of 10)	intron (NM_001077507, intron 5 of 10)	13562.0	NM_001077510	14683.0	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-29328619-2	chr6	29328519	29328719	+	647.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_207258, intron 4 of 6)	ORR1D2|LTR|ERVL-MaLR	9479.0	NM_001289664	330277.0	Mm.87624	NM_207258	ENSMUSG00000039742	Fam71f1	GARI-L1|Gm764|NYD-SP18	family with sequence similarity 71, member F1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-98968199-3	chr7	98968094	98968294	+	754.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 12 of 14)	intron (NM_178635, intron 12 of 14)	129349.0	NM_001285795	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171006550-4	chr1	171006462	171006662	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12364.0	NM_144559	246256.0	Mm.251254	NM_144559	ENSMUSG00000059089	Fcgr4	4833442P21Rik|CD16-2|FcgRIV|FcgammaRIV|Fcgr3a|Fcrl3	Fc receptor, IgG, low affinity IV	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81314447-2	chr10	81314347	81314547	+	830.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001293647, intron 15 of 17)	MTD|LTR|ERVL-MaLR	-6656.0	NM_027381	70312.0	Mm.87628	NM_027381	ENSMUSG00000034889	Cactin	2510012J08Rik	cactin, spliceosome C complex subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-66113902-3	chr7	66113813	66114013	+	619.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081163, intron 1 of 2)	intron (NM_001081163, intron 1 of 2)	4398.0	NM_001081163	269941.0	Mm.333916	NM_001081163	ENSMUSG00000032640	Chsy1	mKIAA0990	chondroitin sulfate synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-34387108-4	chr4	34387024	34387224	+	853.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-163491.0	NM_001007589	433693.0	Mm.389532	NM_026019	ENSMUSG00000028291	Akirin2	2700059D21Rik|AA114675|AA522011|AU019887|Akirin-2	akirin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-120363284-4	chr6	120363167	120363367	+	834.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145997)	promoter-TSS (NM_145997)	-832.0	NM_145997	214899.0	Mm.404761	NM_145997	ENSMUSG00000030180	Kdm5a	AA409370|C76986|Jarid1a|RBP2|Rbbp2	lysine (K)-specific demethylase 5A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-40471407-4	chr6	40471306	40471506	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286664)	promoter-TSS (NM_001286664)	-9.0	NM_212468	381760.0	Mm.276356	NM_028358	ENSMUSG00000029911	Ssbp1	2810480P10Rik|G630031O20Rik|MtSSB|mtDBP	single-stranded DNA binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-102815445-4	chr2	102815409	102815609	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039150, intron 13 of 13)	intron (NM_001039150, intron 13 of 13)	-68749.0	NR_153853	102637542.0	Mm.371582	NR_153852		Gm13872	-	predicted gene 13872	ncRNA	4.23679229909635	4.02251423584595	4.3214066201257	3.91861347489951	4.26907428087754	3.11125402892995	4.59090535878776	4.17557548827595	0.0147027230992377	0.974570697454324	0.998431161219273
Merged-chr9-56121354-2	chr9	56121254	56121454	+	775.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_011193, intron 5 of 14)	intron (NM_011193, intron 5 of 14)	31378.0	NM_011193	19200.0	Mm.2534	NM_011193	ENSMUSG00000032322	Pstpip1	CD2BP1|def-2	proline-serine-threonine phosphatase-interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-76169306-1	chr14	76169206	76169406	+	627.0	f0_balb.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	58415.0	NM_013745	27275.0	Mm.21138	NM_013745	ENSMUSG00000022009	Nufip1	Nufip	nuclear fragile X mental retardation protein interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127523901-1	chr10	127523801	127524001	+	550.0	f1_balb.idr	Intergenic	B1_Mur4|SINE|Alu	-1457.0	NM_028230	108037.0	Mm.29890	NM_028230	ENSMUSG00000025403	Shmt2	2700043D08Rik|AA408223|AA986903|SHMT	serine hydroxymethyltransferase 2 (mitochondrial)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-53377402-4	chr13	53377305	53377505	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009269)	promoter-TSS (NM_009269)	-44.0	NM_009269	268656.0	Mm.240336	NM_009269	ENSMUSG00000021468	Sptlc1	AW552086|C77762|E030036H05|Lcb1|SPT1	serine palmitoyltransferase, long chain base subunit 1	protein-coding	4.61529711104463	4.20814945134531	4.19765941457907	4.44543719947927	4.74367516403668	3.65350379136974	3.88556676441973	4.27226202179912	-0.212822672819612	0.619593353093605	0.978663311075481
Merged-chr2-35622140-2	chr2	35622040	35622240	+	839.900024	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001114124, exon 1 of 16)	5' UTR (NM_001114124, exon 1 of 16)	159.0	NM_001114124	69601.0	Mm.29629	NM_001001602	ENSMUSG00000026883	Dab2ip	2310011D08Rik|AI480459|Aip1|mKIAA1743	disabled 2 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-136988995-1	chr5	136988895	136989095	+	625.0	f1_balb.idr	exon (NM_011962, exon 5 of 19)	exon (NM_011962, exon 5 of 19)	-1036.0	NM_027318	70103.0	Mm.273147	NM_027318	ENSMUSG00000059518	Znhit1	2700001K05Rik|ZNFN4A1	zinc finger, HIT domain containing 1	protein-coding	1.01027332089144	1.36708964069447	0.8379818314011	1.83594093422565	1.73978916404654	0.867701532937868	1.1099611171802	2.76203598062284	1.4701772129709	0.248066747503171	0.747564845079466
Merged-chr13-30624741-2	chr13	30624641	30624841	+	985.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_045975)	TTS (NR_045975)	9698.0	NR_045975	75090.0	Mm.292232	NR_045975	ENSMUSG00000086263	4930519D14Rik	-	RIKEN cDNA 4930519D14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-11217891-3	chr12	11217766	11217966	+	640.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8918.0	NM_019544	56184.0	Mm.117113	NM_019544	ENSMUSG00000047002	Msgn1	Msgn|pMsgn1	mesogenin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-55808886-4	chr1	55808773	55808973	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-122368.0	NR_045837	329159.0	Mm.98697	NR_045837	ENSMUSG00000099950	9130227L01Rik	-	RIKEN cDNA 9130227L01 gene	ncRNA	2.06811702513082	3.80579667645268	2.57760052116845	3.47231677053748	3.20278938502993	2.83077892389202	1.84545202173412	2.96670290930726	-0.602694958019423	0.428659011177419	0.903416445927044
Merged-chr16-35922552-4	chr16	35922474	35922674	+	964.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MYSERV6-int|LTR|ERVK	-15896.0	NM_030253	80285.0	Mm.49074	NM_030253	ENSMUSG00000022906	Parp9	ARTD9|AW214463|BC003281|Bagl|Bal|PARP-9	poly (ADP-ribose) polymerase family, member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-27263766-2	chr11	27263666	27263866	+	694.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	478658.0	NR_002890	654472.0	Mm.347777	NR_002890		Gm12070	-	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-53584105-4	chr17	53584010	53584210	+	969.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001190846)	promoter-TSS (NM_001190846)	-16.0	NM_001190846	18519.0	Mm.255025	NM_020005	ENSMUSG00000000708	Kat2b	A930006P13Rik|AI461839|AW536563|Pcaf|p/CAF	K(lysine) acetyltransferase 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-29325341-4	chr19	29325234	29325434	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013754)	promoter-TSS (NM_013754)	-16.0	NM_013754	27356.0	Mm.306511	NM_013754	ENSMUSG00000050957	Insl6	RIF1	insulin-like 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-79060960-4	chr12	79060864	79061064	+	886.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181073, intron 7 of 28)	intron (NM_181073, intron 7 of 28)	28706.0	NM_029988	110417.0	Mm.268317	NM_029988	ENSMUSG00000021120	Pigh	2210416H01Rik|A930028P05Rik	phosphatidylinositol glycan anchor biosynthesis, class H	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-59707650-2	chr9	59707550	59707750	+	624.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033498)	promoter-TSS (NM_001033498)	13.0	NM_001357686	546134.0	Mm.297580	NM_001033498	ENSMUSG00000074259	Gramd2	BC064463|Gramd2a	GRAM domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-58932097-2	chr15	58931997	58932197	+	587.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175151, intron 1 of 11)	B1_Mus1|SINE|Alu	1633.0	NM_175151	69694.0	Mm.383230	NM_175151	ENSMUSG00000050891	Tatdn1	2310079P03Rik|CDA11	TatD DNase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-102911792-4	chr14	102911692	102911892	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	70840.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-6434064-2	chr15	6433964	6434164	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001008702, intron 10 of 13)	intron (NM_001008702, intron 10 of 13)	-11269.0	NM_013485	12279.0	Mm.29095	NM_013485	ENSMUSG00000022149	C9	-	complement component 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-81855140-4	chr7	81855050	81855250	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3851.0	NR_111910	107769.0	Mm.221412	NM_145375	ENSMUSG00000038623	Tm6sf1	AI428514|BC023123|C630016D09Rik	transmembrane 6 superfamily member 1	protein-coding	5.6319061539413	5.26729153848825	5.40228650582534	5.3289509303921	5.77570974887168	5.37244562216015	4.90849599692375	3.81563651876517	-0.314028859493845	0.399485234114249	0.885176145862419
Merged-chr2-84895692-4	chr2	84895592	84895792	+	876.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9000.0	NM_199223	269295.0	Mm.86447	NM_199223	ENSMUSG00000050896	Rtn4rl2	Ngr2|Ngrh1|Ngrl3	reticulon 4 receptor-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-71212197-2	chr2	71212097	71212297	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347173, intron 1 of 17)	CpG	251.0	NM_010064	13427.0	Mm.249479	NM_010064	ENSMUSG00000027012	Dync1i2	3110079H08Rik|AW554389|Dncic2	dynein cytoplasmic 1 intermediate chain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5250083-4	chr17	5249985	5250185	+	849.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 5 of 19)	intron (NM_001085355, intron 5 of 19)	168682.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-86995869-4	chr11	86995774	86995974	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(A)n|Simple_repeat|Simple_repeat	-2112.0	NM_001005341	77864.0	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-50508892-4	chr17	50508777	50508977	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013880)	promoter-TSS (NM_013880)	-670.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	1.14474803858384	1.18838434125985	0.855652011964229	0.664841457326291	1.15567161478154	0.683831250398466	1.27085586702503	1.11237285843054	0.446969232936509	0.759964644570075	0.998431161219273
Merged-chr3-51184970-4	chr3	51184883	51185083	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT2C1|LTR|ERVL	-39464.0	NM_009834	12457.0	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	4.94676507671565	5.30049551096826	5.38739695077033	5.33982686475214	4.49769613725406	4.76084435333054	4.33197495679221	3.67833855495773	-1.07474018119515	0.00246049546606584	0.0392566816514069
Merged-chr12-4545637-4	chr12	4545547	4545747	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	21534.0	NR_136891	102634330.0	Mm.402324	NR_136891	ENSMUSG00000112422	Gm31938	-	predicted gene, 31938	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-22867220-4	chr17	22867143	22867343	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001110254)	promoter-TSS (NM_001110254)	-109.0	NM_001110254	240041.0	Mm.328828	NM_177358	ENSMUSG00000059142	Zfp945	A630033E08Rik|C730040L01Rik	zinc finger protein 945	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72394564-4	chr6	72394440	72394640	+	970.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3873.0	NM_016794	22320.0	Mm.1838	NM_016794	ENSMUSG00000050732	Vamp8	AU041171|Edb|endobrevin	vesicle-associated membrane protein 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-11965554-4	chr19	11965445	11965645	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033174)	promoter-TSS (NM_001033174)	-299.0	NM_001033174	76303.0	Mm.291279	NM_001033174	ENSMUSG00000024687	Osbp	1110018F06Rik|AW559088|mKIAA4220	oxysterol binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-43461747-2	chr1	43461647	43461847	+	848.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010879, intron 1 of 4)	MTC|LTR|ERVL-MaLR	15996.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-145106648-3	chr7	145106547	145106747	+	884.922241	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	101472.0	NR_033626	100040049.0	Mm.102235	NR_033626	ENSMUSG00000109305	1810010D01Rik	Gm2572	RIKEN cDNA 1810010D01 gene	ncRNA	2.34273050465881	2.53545739499847	1.76066830032095	3.03116016595116	1.80193443036344	2.17798511629069	1.95127584491987	1.52124145782328	-1.4982735291507	0.099601612495834	0.49093671225075
Merged-chr14-98815836-2	chr14	98815736	98815936	+	848.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	230300.0	NM_175245	76789.0	Mm.38912	NM_175245	ENSMUSG00000033186	Mzt1	2410129H14Rik|AI120158|Mozart1	mitotic spindle organizing protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-80787669-2	chr8	80787569	80787769	+	791.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021356, intron 4 of 9)	intron (NM_021356, intron 4 of 9)	-48210.0	NM_053124	93762.0	Mm.246803	NM_053124	ENSMUSG00000031715	Smarca5	4933427E24Rik|D030040M08Rik|D330027N15Rik|MommeD4|Snf2h	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-62865393-4	chr10	62865287	62865487	+	680.354187	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253857, intron 2 of 12)	intron (NM_001253857, intron 2 of 12)	21937.0	NM_001253857	52463.0	Mm.17774	NM_027384	ENSMUSG00000047146	Tet1	2510010B09Rik|AA517754|BB001228|Cxxc6|D10Ertd17e|LCX|mKIAA1676	tet methylcytosine dioxygenase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-108301190-4	chr4	108301099	108301299	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033634)	promoter-TSS (NM_001033634)	-109.0	NM_001033634	414872.0	Mm.426241	NM_001033634	ENSMUSG00000034636	Zyg11b	1110046I03Rik|2810482G21Rik|D4Mgi23|Gm431|mKIAA1730	zyg-ll family member B, cell cycle regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-3573956-4	chr13	3573857	3574057	+	939.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_134063, exon 14 of 20)	exon (NM_134063, exon 14 of 20)	35882.0	NM_008112	14569.0	Mm.153226	NM_008112	ENSMUSG00000021218	Gdi2	GDI-B|GDIB|Gdi3	guanosine diphosphate (GDP) dissociation inhibitor 2	protein-coding	3.35639113370347	2.30600946444551	2.80891808068925	2.53256091170451	1.28731141054332	2.93137358447798	1.6609107975526	2.30967080149839	-1.23450011652026	0.168243519473686	0.634264819554251
Merged-chr19-55811385-1	chr19	55811285	55811485	+	565.0	f1_c57bl6.idr	intron (NM_001331146, intron 4 of 14)	(TG)n|Simple_repeat|Simple_repeat	69575.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	1.65089409346724	1.00524521787523	0.986902411643469	1.94255092316934	1.55795107488569	1.25083335450881	1.69531944414495	2.11929602942317	0.699234268173124	0.5700818218093	0.962718661854691
Merged-chr5-135677418-4	chr5	135677288	135677488	+	996.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur3|SINE|Alu	-11757.0	NM_008898	18984.0	Mm.3863	NM_008898	ENSMUSG00000005514	Por	4933424M13Rik|CPR|CYPOR|P450R	P450 (cytochrome) oxidoreductase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-44033946-2	chr4	44033846	44034046	+	642.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_015828)	TTS (NM_015828)	21296.0	NM_001290470	12757.0	Mm.298875	NM_016760	ENSMUSG00000028478	Clta	AV026556|Lca	clathrin, light polypeptide (Lca)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-142605261-2	chr3	142605161	142605361	+	656.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010259, intron 6 of 10)	ID_B1|SINE|B4	10414.0	NM_010259	14468.0	Mm.457978	NM_010259	ENSMUSG00000040264	Gbp2b	Gbp-1|Gbp1|Mag-1|Mpa-1|Mpa1	guanylate binding protein 2b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-51696909-4	chr15	51696802	51697002	+	970.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	168559.0	NM_080635	68135.0	Mm.289800	NM_080635	ENSMUSG00000022312	Eif3h	1110008A16Rik|40kD|9430017H16Rik|EIF3-P40|EIF3-gamma|Eif3s3	eukaryotic translation initiation factor 3, subunit H	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-61917686-3	chr8	61917598	61917798	+	907.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14|LTR|ERV1	-10389.0	NM_001293783	234311.0	Mm.275233	NM_144928	ENSMUSG00000037921	Ddx60	9830118M07	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-112659296-2	chr12	112659196	112659396	+	818.833374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_105904)	promoter-TSS (NR_105904)	55.0	NR_105904	102465566.0		NR_105904	ENSMUSG00000098380	Mir6939	Gm27498|mmu-mir-6939	microRNA 6939	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-11342228-2	chr16	11342128	11342328	+	660.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028964, intron 1 of 20)	intron (NM_028964, intron 1 of 20)	19324.0	NM_028964	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-30402280-1	chr6	30402180	30402380	+	984.0	f0_c57.idr	intron (NM_001311087, intron 1 of 8)	CpG	425.0	NM_001311087	76788.0	Mm.277308	NM_029742	ENSMUSG00000029775	Klhdc10	2410127E18Rik|AI593221|mKIAA0265	kelch domain containing 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44866978-2	chr7	44866876	44867076	+	620.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133949, intron 4 of 11)	intron (NM_133949, intron 4 of 11)	2812.0	NM_133949	84113.0	Mm.42855	NM_133949	ENSMUSG00000038502	Ptov1	1110030G05Rik|AU041779|Gcap3	prostate tumor over expressed gene 1	protein-coding	0.865109157051875	0.727269159760619	0.932656532842582	0.700992340274334	1.16369409816061	1.90503306545887	1.64086793126956	1.23272745154297	3.47015310681692	0.0201619403719424	0.180166689070897
Merged-chr8-84233804-2	chr8	84233695	84233895	+	768.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172503, intron 2 of 13)	L1MA4|LINE|L1	3247.0	NM_172503	212168.0	Mm.117094	NM_172503	ENSMUSG00000035671	Zswim4	D330002I24|E130119J17Rik	zinc finger SWIM-type containing 4	protein-coding	2.04773522813988	2.44188340417409	1.41137393700682	2.86571242706372	3.15775100607101	2.46011871679466	2.23908808809253	2.42275401452301	0.674883048994527	0.439441424633518	0.909130714404946
Merged-chr15-103314516-2	chr15	103314416	103314616	+	608.75	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_013866, exon 8 of 8)	3' UTR (NM_013866, exon 8 of 8)	-4078.0	NM_030720	80910.0	Mm.160369	NM_030720	ENSMUSG00000063234	Gpr84	EX33	G protein-coupled receptor 84	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55681534-2	chr14	55681433	55681633	+	1000.0	f0_balb.idr|f0_c57.idr	exon (NM_145705, exon 1 of 9)	exon (NM_145705, exon 1 of 9)	284.0	NM_145705	28113.0	Mm.29346	NM_145705	ENSMUSG00000007589	Tinf2	AW552114|D14Wsu146e|Tin2	Terf1 (TRF1)-interacting nuclear factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-3018915-6	chr9	3018906	3019106	+	913.6527710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GSAT_MM|Satellite|Satellite	19737.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-130805937-4	chr4	130805864	130806064	+	879.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011520, intron 1 of 4)	Tigger7|DNA|TcMar-Tigger	13427.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-19968009-4	chr11	19967905	19968105	+	877.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033523, intron 1 of 5)	intron (NM_033523, intron 1 of 5)	43563.0	NM_033523	114716.0	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-46961968-1	chr13	46961868	46962068	+	609.0	f0_c57.idr	Intergenic	HAL1|LINE|L1	-32250.0	NM_010617	16553.0	Mm.342703	NM_010617	ENSMUSG00000021375	Kif13a	4930505I07Rik|mKIAA4109	kinesin family member 13A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107657127-1	chr9	107657027	107657227	+	661.0	f1_balb.idr	intron (NM_001199218, intron 7 of 15)	intron (NM_001199218, intron 7 of 15)	10272.0	NM_023805	76257.0	Mm.296560	NM_023805	ENSMUSG00000010064	Slc38a3	0610012J02Rik|D9Ucla2|Nat1|Slc38-3|Sn1|Snat3|mNAT	solute carrier family 38, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132946698-6	chr4	132946652	132946852	+	918.9833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24201.0	NM_001163792	230789.0	Mm.11473	NM_145553	ENSMUSG00000028878	Fam76a	-	family with sequence similarity 76, member A	protein-coding	1.53978245428981	1.03472754497309	1.78245274178597	1.91728138711961	1.4388517301451	1.26297291994129	1.68241398123248	1.50703086612459	-0.474384184661641	0.682643256809672	0.995882295196263
Merged-chr1-93013627-3	chr1	93013525	93013725	+	952.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7291.0	NM_177587	208760.0	Mm.235537	NM_177587	ENSMUSG00000045091	Aqp12	AB084104|mAQP12	aquaporin 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-4329177-3	chr8	4329075	4329275	+	835.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033527, intron 2 of 5)	intron (NR_033527, intron 2 of 5)	3965.0	NR_033527	20300.0	Mm.7275	NM_009138	ENSMUSG00000023235	Ccl25	A130072A22Rik|AI852536|CKb15|Scya25|TECK	chemokine (C-C motif) ligand 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128241094-1	chr2	128240994	128241194	+	643.0	f0_balb.idr	Intergenic	Intergenic	113519.0	NM_001284410	12125.0	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	1.12580483913643	0.483752213014208	0.948180825426554	0.468995868788329	1.13895477263013	0.485621796225191	0.477273808298435	1.03085970081224	0.153872403536996	0.931049142604144	1
Merged-chr17-50345338-4	chr17	50345225	50345425	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	-51705.0	NM_001277863	13164.0	Mm.280641	NM_010021	ENSMUSG00000010592	Dazl	Daz-like|Dazh|Dazl1|Dazla|Tpx-2|Tpx2	deleted in azoospermia-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-55591661-4	chr4	55591554	55591754	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6BA|LTR|ERVK	-59179.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	3.11200827553008	3.74871136037882	4.00804010497843	4.00668116065115	3.79670560768317	3.20500549132932	3.09518684612179	2.74166128933761	-0.739359271662131	0.19126011288349	0.669546561020494
Merged-chr7-49032269-2	chr7	49032169	49032369	+	652.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111016, intron 2 of 38)	intron (NM_001111016, intron 2 of 38)	73196.0	NM_001111016	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-72647775-4	chr5	72647688	72647888	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081205)	promoter-TSS (NM_001081205)	-8.0	NM_001081205	70701.0	Mm.38884	NM_001081205	ENSMUSG00000067219	Nipal1	3830408G10Rik|Npal1	NIPA-like domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97526329-4	chr6	97526200	97526400	+	723.950012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	-38480.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0.407593262610659	0.251657752385238	0.240146967069752	0.44738538119468	1.04500571172019	1.63582686428911	0.24270847001417	0.232676897509975	3.14996904468458	0.0911821647022809	0.46699072798718
Merged-chr7-132316430-5	chr7	132316450	132316650	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_028578, exon 1 of 1)	non-coding (NR_028578, exon 1 of 1)	476.0	NM_001360768	77590.0	Mm.213582	NM_029935	ENSMUSG00000030930	Chst15	4631426J05Rik|BRAG|GalNAc4S-6ST|GalNAcS-6ST|MAd5|mKIAA0598	carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-40317394-2	chr10	40317294	40317494	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT-int|LTR|ERVL-MaLR	-15206.0	NM_009665	11702.0	Mm.253533	NM_009665	ENSMUSG00000075232	Amd1	AdoMetDC|Amd-1|SAMDC|SAMDC 1|adoMetDC1	S-adenosylmethionine decarboxylase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116581556-4	chr11	116581460	116581660	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173755)	promoter-TSS (NM_173755)	-113.0	NM_173755	217342.0	Mm.243950	NM_173755	ENSMUSG00000020802	Ube2o	9630022H21|B230113M03Rik|E2-230K|mKIAA1734	ubiquitin-conjugating enzyme E2O	protein-coding	3.92968053168475	3.83861007934232	2.60211363951664	4.62186572769283	4.51506520879186	3.68506492018984	4.52537313814226	4.20598744543904	0.462972976757871	0.371198052939018	0.863911489096448
Merged-chr9-64089269-4	chr9	64089164	64089364	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8503.0	NR_040743	76814.0	Mm.243771	NR_040743		Scarletltr	2600006L11Rik	Scarletltr, erythroid developmental long intergenic non-protein coding transcript	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-96559241-5	chr9	96559158	96559358	+	912.0866699999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053268, intron 16 of 23)	MLTR11B|LTR|ERVK	72245.0	NM_053268	114713.0	Mm.124502	NM_053268	ENSMUSG00000032413	Rasa2	5430433H21Rik|AA517451|AU023900|GAP1m	RAS p21 protein activator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-109423836-1	chr11	109423736	109423936	+	564.0	f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-2110.0	NM_025275	13929.0	Mm.211850	NM_025275	ENSMUSG00000020610	Amz2	AA408420|ESTM12|X83328	archaelysin family metallopeptidase 2	protein-coding	1.77938435022204	0.768782171694801	1.9646123373043	1.5309447740407	1.45077814727771	0.772438335120709	0.75597517159213	0.741576617647453	-2.29336009247763	0.126455421320549	0.55689342891744
Merged-chr2-75757510-4	chr2	75757432	75757632	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52869.0	NM_010902	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101172103-4	chr11	101172009	101172209	+	990.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346769)	promoter-TSS (NM_001346769)	-737.0	NM_001346769	217198.0	Mm.273254	NM_146030	ENSMUSG00000035172	Plekhh3	BC020025	pleckstrin homology domain containing, family H (with MyTH4 domain) member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3719204-4	chr19	3719111	3719311	+	875.354126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10800.0	NM_001358257	72056.0	Mm.23780	NM_028077	ENSMUSG00000035372	1810055G02Rik	AI256204	RIKEN cDNA 1810055G02 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-70410478-4	chr4	70410370	70410570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145990)	promoter-TSS (NM_145990)	-35.0	NM_145990	214444.0	Mm.370777	NM_145990	ENSMUSG00000039298	Cdk5rap2	2900018K03Rik|an|mKIAA1633	CDK5 regulatory subunit associated protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-149279806-2	chr5	149279706	149279906	+	677.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009663, intron 3 of 4)	intron (NM_009663, intron 3 of 4)	14802.0	NM_009663	11690.0	Mm.19844	NM_009663	ENSMUSG00000060063	Alox5ap	Flap	arachidonate 5-lipoxygenase activating protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-75124924-5	chr1	75124885	75125085	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_194333)	TTS (NM_194333)	8905.0	NM_194333	22626.0	Mm.68157	NM_194333	ENSMUSG00000026205	Slc23a3	SVCT3|Yspl1	solute carrier family 23 (nucleobase transporters), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141142591-7	chr4	141142482	141142682	+	996.5714109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2786.0	NR_102343	213491.0	Mm.332006	NM_174996	ENSMUSG00000040842	Szrd1	1110022I03|D4Ertd22e	SUZ RNA binding domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166074681-4	chr2	166074644	166074844	+	782.424988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028072, exon 21 of 21)	3' UTR (NM_028072, exon 21 of 21)	80541.0	NM_001355619	72043.0	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	0.890326853319694	0.399156188697323	0.393669230137805	1.03142995363103	0.820515667793623	0.400400060478716	0.394875030329446	0.667796935773178	-0.870199137304075	0.6415300717797	1
Merged-chr19-40726316-1	chr19	40726216	40726416	+	666.5	f1_c57bl6.idr	intron (NM_001304721, intron 6 of 9)	intron (NM_001304721, intron 6 of 9)	66546.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	0.823496862153935	0.437311801305995	0.428224032938794	1.43650057059392	0.712520667501003	0.654365963497771	0.934478297531961	0.422391527084348	-0.859423488971244	0.609796567470147	1
Merged-chr8-119830847-6	chr8	119830763	119830963	+	921.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028071, intron 2 of 3)	intron (NM_028071, intron 2 of 3)	9716.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-32163849-4	chr12	32163730	32163930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44508.0	NM_001146201	30955.0	Mm.101369	NM_020272	ENSMUSG00000020573	Pik3cg	5830428L06Rik|PI3Kgamma|p110gamma	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding	5.28165435195018	4.65190703165374	4.85473007636921	4.61405416563445	4.34533491304358	3.77853890894512	3.04166909292175	4.67663374319337	-0.981593235162882	0.0248803239777583	0.20855835902347
Merged-chr6-9706287-2	chr6	9706187	9706387	+	627.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C2-int|LTR|ERVL-MaLR	756268.0	NM_008751	18231.0	Mm.46954	NM_008751	ENSMUSG00000046178	Nxph1	C130005L03Rik	neurexophilin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-50134551-2	chr17	50134412	50134612	+	872.116699	f1_balb.idr|f1_c57bl6.idr	intron (NM_181397, intron 2 of 9)	intron (NM_181397, intron 2 of 9)	55985.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	2.15013830948683	2.81797925060546	2.44727181007037	2.71847371552482	1.44414850632928	2.31609329682124	1.29068611408203	1.88478297831842	-1.85435966602398	0.048342256302423	0.319647888443775
Merged-chr13-9764543-4	chr13	9764449	9764649	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347472)	promoter-TSS (NM_001347472)	-79.0	NM_001347472	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135439447-4	chr4	135439343	135439543	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5638.0	NM_022980	53902.0	Mm.331970	NM_022980	ENSMUSG00000059713	Rcan3	AU041093|Csp3|Dscr1l2	regulator of calcineurin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-47446295-2	chr19	47446195	47446395	+	671.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008018, intron 1 of 14)	intron (NM_008018, intron 1 of 14)	18116.0	NM_001164717	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	-1.10384998116487	-1.07946603826229	-1.09181520747217	-1.09984628216847	-1.10325314425446	-1.07678992177872	-1.08901962624914	-0.315793331868817	3.00679100283758	0.36959816332642	1
Merged-chr11-105502530-4	chr11	105502413	105502613	+	930.216675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45778.0	NM_001039242	632687.0	Mm.121570	NM_172568	ENSMUSG00000078627	March10	4933417C16Rik|AV039223|Rnf190	membrane-associated ring finger (C3HC4) 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-21758571-2	chr14	21758402	21758602	+	601.0	f0_balb.idr|f1_balb.idr	intron (NM_001359953, intron 1 of 5)	Lx9|LINE|L1	6950.0	NM_001359953	67630.0	Mm.102765	NM_026283	ENSMUSG00000021770	Samd8	1110053F04Rik|1700010P07Rik|SMSr	sterile alpha motif domain containing 8	protein-coding	1.55482840858604	1.02009071327187	1.55665674245639	0.988135302625499	1.67510680336233	2.19656134350733	1.56903046415527	1.76508846093565	1.74732336972003	0.142661669301113	0.589929038258074
Merged-chr11-29149066-4	chr11	29148971	29149171	+	972.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027869, intron 18 of 27)	intron (NM_027869, intron 18 of 27)	18320.0	NM_027869	71701.0	Mm.211131	NM_027869	ENSMUSG00000020464	Pnpt1	1200003F12Rik|Old35|PNPase|Pnptl1	polyribonucleotide nucleotidyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-14705556-4	chr10	14705475	14705675	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045824)	promoter-TSS (NR_045824)	-34.0	NR_045824	69412.0	Mm.259735	NR_045824	ENSMUSG00000019865	1700016L04Rik	-	RIKEN cDNA 1700016L04 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-134232800-4	chr5	134232698	134232898	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3173.0	NR_104383	17969.0	Mm.425296	NM_010876	ENSMUSG00000015950	Ncf1	NCF-47K|NOXO2|Ncf-1|p47-phox|p47<phox>|p47phox	neutrophil cytosolic factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-38660597-2	chr8	38660497	38660697	+	899.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145841, intron 1 of 7)	CpG	911.0	NM_145841	244431.0	Mm.210388	NM_145841	ENSMUSG00000039539	Sgcz	C230085N17Rik	sarcoglycan zeta	protein-coding	0.557286587774421	0.634129585942748	1.22331495283543	0.589963707299237	0.696549906491103	0.430892360379833	1.14077691389271	0.415155758975538	-0.383204598727269	0.814372075186145	1
Merged-chr1-141454392-2	chr1	141454292	141454492	+	591.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15-int|LTR|ERVL	-797990.0	NR_040604	75910.0	Mm.483845	NR_040604	ENSMUSG00000102368	4930590L20Rik	-	RIKEN cDNA 4930590L20 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-24493101-2	chr14	24493001	24493201	+	697.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_207634, intron 3 of 4)	intron (NM_207634, intron 3 of 4)	2348.0	NM_001360586	20088.0	Mm.16775	NM_011297	ENSMUSG00000025290	Rps24	-	ribosomal protein S24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-116837182-3	chr3	116837040	116837240	+	827.43335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22427.0	NM_001113478	20321.0	Mm.66293	NM_009146	ENSMUSG00000033386	Frrs1	AI131732|Sdfr2	ferric-chelate reductase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-129585268-2	chr5	129585168	129585368	+	822.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_011846, intron 1 of 9)	CpG	1099.0	NM_011846	23948.0	Mm.42047	NM_011846	ENSMUSG00000029436	Mmp17	MT4-MMP|MT4MMP|MTMMP4	matrix metallopeptidase 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-17882828-4	chr17	17882720	17882920	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013521, intron 1 of 1)	intron (NM_013521, intron 1 of 1)	1119.0	NM_013521	14293.0	Mm.56951	NM_013521	ENSMUSG00000045551	Fpr1	FPR|LXA4R|fMLF-R	formyl peptide receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-10192948-4	chr16	10192845	10193045	+	971.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153123)	promoter-TSS (NM_153123)	39.0	NM_029253	75329.0	Mm.108729	NM_029253	ENSMUSG00000039200	Atf7ip2	4930558K11Rik|BC018510|Get-1|PSM2	activating transcription factor 7 interacting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-160237935-4	chr2	160237831	160238031	+	948.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	89563.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-8676443-2	chr16	8676343	8676543	+	946.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-4290.0	NM_025821	52502.0	Mm.142095	NM_025821	ENSMUSG00000008393	Carhsp1	1200011K09Rik|Crhsp-24|D16Ertd465e	calcium regulated heat stable protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120236573-3	chr11	120236479	120236679	+	854.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198423, intron 1 of 27)	CpG	3632.0	NM_198423	268515.0	Mm.309498	NM_198423	ENSMUSG00000039741	Bahcc1	B930044J06|BC060615	BAH domain and coiled-coil containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-12294279-4	chr2	12294202	12294402	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001309, intron 2 of 29)	intron (NM_001001309, intron 2 of 29)	-6944.0	NR_040353	338535.0	Mm.483275	NR_040353	ENSMUSG00000086843	E030013I19Rik	-	RIKEN cDNA E030013I19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-112667346-4	chr13	112667252	112667452	+	847.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178746, intron 1 of 14)	intron (NM_178746, intron 1 of 14)	6586.0	NM_178746	268706.0	Mm.40834	NM_175376	ENSMUSG00000047789	Slc38a9	4833412L08Rik|6720411P22Rik|9130023D20Rik|9430067K09Rik|A730092C09	solute carrier family 38, member 9	protein-coding	4.23064675918837	5.06428461317633	4.88238497391491	4.44253309870542	4.26368569109691	4.16240252892061	3.5123205403982	3.288606335301	-1.06451013717528	0.0157774251301362	0.150320338354461
Merged-chr16-91396478-2	chr16	91396378	91396578	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347258, intron 7 of 7)	RSINE1|SINE|B4	-9757.0	NM_008349	16155.0	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-80410506-3	chr18	80410401	80410601	+	926.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026295, intron 12 of 12)	intron (NM_026295, intron 12 of 12)	-46247.0	NM_001190373	240444.0	Mm.279568	NM_001190373	ENSMUSG00000059852	Kcng2	AA591524	potassium voltage-gated channel, subfamily G, member 2	protein-coding	-1.3681463318974	-1.33624156493372	-1.34650167276047	-0.80669348975676	-1.36769697821496	-1.33401815676661	-1.34417900924365	-1.3534210303531	-2.3580830592467	0.49586638340111	1
Merged-chr7-31103525-1	chr7	31103425	31103625	+	937.0	f1_balb.idr	exon (NM_001276269, exon 5 of 13)	exon (NM_001276269, exon 5 of 13)	7472.0	NM_001276269	15451.0	Mm.19182	NM_008281	ENSMUSG00000001249	Hpn	Hlb320	hepsin	protein-coding	-0.428590799388213	-0.556973450941566	-0.560440906817042	-0.563108868827628	-0.42477379456078	0.0532829725749165	-0.559677045305134	-0.400361064133758	2.46682478890704	0.316820987220496	1
Merged-chr5-32190359-2	chr5	32190259	32190459	+	666.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42349.0	NM_030072	665270.0	Mm.160067	NM_030072	ENSMUSG00000029134	Plb1	4632413E21Rik|4930433E17Rik|4930539A06Rik|BC033606	phospholipase B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25752673-2	chr7	25752573	25752773	+	733.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360789, intron 1 of 14)	intron (NM_001360789, intron 1 of 14)	2086.0	NM_144922	232989.0	Mm.254223	NM_144922	ENSMUSG00000040725	Hnrnpul1	E130317O14Rik|E1B-AP5|E1BAP5|Hnrnpul|Hnrpul1	heterogeneous nuclear ribonucleoprotein U-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-48699126-4	chr6	48699050	48699250	+	996.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9094.0	NM_153175	231931.0	Mm.321047	NM_153175	ENSMUSG00000047867	Gimap6	4833419H03Rik|Ian6|mFLJ00102	GTPase, IMAP family member 6	protein-coding	3.26762699221101	3.02916949891618	3.46340835737435	3.7830870727816	2.91160854057872	3.16325337341334	1.95383021121509	2.96295681453781	-1.01003724227907	0.118125313177905	0.539169023664366
Merged-chr1-138542303-2	chr1	138542203	138542403	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021605, intron 3 of 9)	intron (NM_021605, intron 3 of 9)	77454.0	NM_021605	59125.0	Mm.143817	NM_021605	ENSMUSG00000026393	Nek7	2810460C19Rik|AU020186	NIMA (never in mitosis gene a)-related expressed kinase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105290292-5	chr8	105290170	105290370	+	918.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166394)	promoter-TSS (NM_001166394)	-742.0	NM_028888	74356.0	Mm.204876	NM_028888	ENSMUSG00000014837	4931428F04Rik	AI426165|Kiaa0895l	RIKEN cDNA 4931428F04 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-23914705-4	chr18	23914598	23914798	+	869.3249509999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MEc|LINE|L1	-39990.0	NM_027007	69256.0	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-6890482-2	chr13	6890382	6890582	+	774.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13C2|LTR|ERVK	-241711.0	NM_001291071	56421.0	Mm.273874	NM_019703	ENSMUSG00000021196	Pfkp	1200015H23Rik|9330125N24Rik|ATP-PFK|PFK-C|PFK-P	phosphofructokinase, platelet	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-3017136-1	chr9	3017036	3017236	+	709.0	f1_c57bl6.idr	Intergenic	GSAT_MM|Satellite|Satellite	21607.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-34913856-1	chr2	34913756	34913956	+	654.75	f0_balb.idr	intron (NM_028716, intron 1 of 14)	CpG	120.0	NM_028716	74016.0	Mm.65691	NM_028716	ENSMUSG00000026873	Phf19	3110009G19Rik|3321402G02Rik	PHD finger protein 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-43273733-4	chr7	43273748	43273948	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER54A|LTR|ERVL	39452.0	NM_001357812	69930.0	Mm.45367	NM_027264	ENSMUSG00000012640	Zfp715	2610041B18Rik|mszf15	zinc finger protein 715	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-120571054-4	chr9	120570978	120571178	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025974)	promoter-TSS (NM_025974)	-439.0	NM_025974	67115.0	Mm.289810	NM_025974	ENSMUSG00000025794	Rpl14	3100001N19Rik|AA407502|AL022816|CAG-ISL-7|CTG-B33|L14	ribosomal protein L14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-114614321-2	chr6	114614221	114614421	+	734.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	IMPB_01|Satellite|Satellite	-28776.0	NM_028835	74244.0	Mm.275332	NM_028835	ENSMUSG00000030314	Atg7	1810013K23Rik|Agp7|Apg7l|Atg7l|Gm21553	autophagy related 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-79878311-4	chr11	79878231	79878431	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	84056.0	NM_144826	216987.0	Mm.274961	NM_144826	ENSMUSG00000035575	Utp6	4732497O03Rik|HCA66	UTP6 small subunit processome component	protein-coding	0.678747239131886	0.441449755160328	0.605557127670009	0.841697080207993	0.685481408664419	0.92785811372985	0.436112624116712	0.953341725080712	0.712350765859225	0.660714610616329	1
Merged-chr1-64376579-4	chr1	64376469	64376669	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-156235.0	NM_009952	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56135419-2	chr17	56135319	56135519	+	757.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001130456, intron 1 of 16)	intron (NM_001130456, intron 1 of 16)	-1567.0	NM_013662	20359.0	Mm.8029	NM_013662	ENSMUSG00000001227	Sema6b	Sema|Seman|VIb|semaZ	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-87213069-2	chr1	87212969	87213169	+	600.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347083)	promoter-TSS (NM_001347083)	-842.0	NM_001347083	26987.0	Mm.227183	NM_023314	ENSMUSG00000026254	Eif4e2	2700069E09Rik|AI036339|AV129531|D0H0S6743E|Eif4el3	eukaryotic translation initiation factor 4E member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-65594383-4	chr6	65594293	65594493	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001495, intron 2 of 7)	intron (NM_001001495, intron 2 of 7)	3995.0	NM_001001495	414084.0	Mm.117558	NM_001001495	ENSMUSG00000044162	Tnip3	9030611K07Rik|ABIN-3|LIND	TNFAIP3 interacting protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-113737190-2	chr5	113737090	113737290	+	856.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001010825, intron 2 of 2)	intron (NM_001010825, intron 2 of 2)	1408.0	NM_001010825	231630.0	Mm.21926	NM_001010825	ENSMUSG00000053334	Ficd	D5Ertd40e|Hype	FIC domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-73628278-4	chr7	73628169	73628369	+	869.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	58294.0	NR_033604	244061.0	Mm.484605	NR_033604	ENSMUSG00000108337	Gm4971	EG244061	Smad nuclear interacting protein 1 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-4757171-5	chr5	4757130	4757330	+	782.119995	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_021457, exon 1 of 1)	exon (NM_021457, exon 1 of 1)	986.0	NM_021457	14362.0	Mm.246003	NM_021457	ENSMUSG00000044674	Fzd1	AW227548|FZ-1|Fz1	frizzled class receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-93590074-4	chr2	93589993	93590193	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52341.0	NM_007442	11695.0	Mm.389389	NM_007442	ENSMUSG00000040310	Alx4	lst	aristaless-like homeobox 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99029065-4	chr15	99028942	99029142	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009448)	promoter-TSS (NM_009448)	-849.0	NM_009448	22146.0	Mm.88212	NM_009448	ENSMUSG00000043091	Tuba1c	M[a]6|Tuba6	tubulin, alpha 1C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167923761-4	chr2	167923664	167923864	+	997.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	-8563.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-37295509-1	chr13	37295409	37295609	+	546.0	f0_balb.idr	Intergenic	Intergenic	-49836.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	0.46433376738576	0.529540540884288	0.509149225116485	0.492801871020088	1.79419874043225	0.534021569317216	2.34765592657656	1.2936465433885	5.28812905452201	0.00105573000389361	0.0202558346269439
Merged-chr6-39780518-2	chr6	39780418	39780618	+	879.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur3|SINE|Alu	30418.0	NM_010270	14548.0	Mm.377071	NM_010270	ENSMUSG00000029918	Mrps33	AI841153|CGI-139|Gdap3|MRP-S33|PTD003	mitochondrial ribosomal protein S33	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132596493-2	chr4	132596393	132596593	+	901.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32426.0	NM_001081211	19204.0	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	-1.53624506061781	-1.50498120743042	-1.36567403739569	-1.52220181915623	-1.2509067664531	-1.50293238927041	-1.51229537506134	-1.5208116794288	0.640753741356348	0.855918148133185	1
Merged-chr3-145924908-4	chr3	145924792	145924992	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009740, intron 1 of 2)	CpG	630.0	NM_009740	12042.0	Mm.239141	NM_009740	ENSMUSG00000028191	Bcl10	AI132454|BCL-10|C81403|CARMEN|CIPER|CLAP|ME10|cE10	B cell leukemia/lymphoma 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-25015367-3	chr17	25015262	25015462	+	917.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020608)	promoter-TSS (NM_020608)	-132.0	NM_020608	57354.0	Mm.328854	NM_020608	ENSMUSG00000038002	Cramp1l	5830477H08Rik|AI256853|AI790734|Cramp1|Tce4|mKIAA1426	cramped chromatin regulator homolog 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-7077998-3	chr1	7077878	7078078	+	843.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19C|LTR|ERVK	-10942.0	NM_183028	319263.0	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135478978-2	chr5	135478871	135479071	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_146001, intron 1 of 30)	B4|SINE|B4	66151.0	NM_146001	215114.0	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-64907915-3	chr1	64907815	64908015	+	632.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039493, intron 3 of 7)	intron (NM_001039493, intron 3 of 7)	48909.0	NM_001039493	241075.0	Mm.239534	NM_175509	ENSMUSG00000051344	Plekhm3	9430067K14Rik|A230102O09Rik|AI449570|DAPR|Plekhm1l	pleckstrin homology domain containing, family M, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140735499-4	chr5	140735388	140735588	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173405, intron 2 of 7)	intron (NM_173405, intron 2 of 7)	11361.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-90604161-2	chr6	90604061	90604261	+	741.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027868)	promoter-TSS (NM_027868)	-719.0	NM_027868	71699.0	Mm.272633	NM_027868	ENSMUSG00000030089	Slc41a3	1010001P06Rik|AI480742|SLC41A1-L2	solute carrier family 41, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-62060153-4	chr15	62060050	62060250	+	994.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132746, intron 1 of 6)	intron (NR_132746, intron 1 of 6)	20893.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-55051200-1	chr1	55051100	55051300	+	618.0	f1_balb.idr	Intergenic	Intergenic	-1570.0	NM_026424	67876.0	Mm.281019	NM_026424	ENSMUSG00000025981	Coq10b	1500041J02Rik|1700030I21Rik|9530077A17Rik|AV002237|AW742641	coenzyme Q10B	protein-coding	2.1724336671476	3.76939295067981	1.32352623023741	2.85063109494229	2.0518053028603	2.97380292795181	1.33449212010367	2.95059732150153	-0.621057360869625	0.519906696671095	0.947641799425091
Merged-chr6-125481239-4	chr6	125481128	125481328	+	764.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007657, intron 1 of 7)	intron (NM_007657, intron 1 of 7)	13532.0	NM_007657	12527.0	Mm.210676	NM_007657	ENSMUSG00000030342	Cd9	Tspan29	CD9 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19746958-5	chr7	19746817	19747017	+	858.1333619999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008990, intron 1 of 8)	intron (NM_008990, intron 1 of 8)	2656.0	NM_008990	19294.0	Mm.4341	NM_008990	ENSMUSG00000062300	Nectin2	AI325026|AI987993|Cd112|MPH|Pvr|Pvrl2|Pvs|nectin-2	nectin cell adhesion molecule 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-35192268-4	chr12	35192104	35192304	+	980.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	2693.0	NR_030449	751520.0		NR_030449	ENSMUSG00000076253	Mir680-3	Mirn680-3	microRNA 680-3	ncRNA	4.97601524112458	4.45198512860996	3.33703371915046	4.25065246820716	4.12583046458846	3.96361726321082	3.24800990593356	3.9916952530834	-0.680359655157386	0.166413617183348	0.631860474643107
Merged-chr11-116337271-2	chr11	116337171	116337371	+	834.166626	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_027258, exon 19 of 19)	3' UTR (NM_027258, exon 19 of 19)	-1917.0	NM_008240	15223.0	Mm.378938	NM_008240	ENSMUSG00000034227	Foxj1	FKHL-13|HFH-4|Hfh4	forkhead box J1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-57577505-2	chr8	57577405	57577605	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001167981, intron 2 of 11)	intron (NM_001167981, intron 2 of 11)	65662.0	NM_008252	97165.0	Mm.276881	NM_008252	ENSMUSG00000054717	Hmgb2	C80539|HMG-2|Hmg2	high mobility group box 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-144689455-3	chr3	144689360	144689560	+	946.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_019464, exon 9 of 9)	3' UTR (NM_019464, exon 9 of 9)	30875.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-32801045-4	chr13	32800947	32801147	+	931.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030215)	promoter-TSS (NM_030215)	-983.0	NM_030215	78903.0	Mm.286680	NM_030215	ENSMUSG00000021400	Wrnip1	4833444L21Rik|WHIP|Wrnip	Werner helicase interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133117715-2	chr4	133117615	133117815	+	863.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12918.0	NM_153423	242687.0	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-121387204-2	chr5	121387104	121387304	+	854.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1589.0	NM_172275	231712.0	Mm.20488	NM_172275	ENSMUSG00000042726	Trafd1	1110008K06Rik|Fln29	TRAF type zinc finger domain containing 1	protein-coding	0.255433698643873	0.124798459286749	0.11827245377949	0.767313701124457	0.391463930172287	0.883628607868125	0.119714091168207	0.114102971794381	0.448868958857821	0.823161140230374	1
Merged-chr11-99171517-2	chr11	99171417	99171617	+	681.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16440.0	NM_007719	12775.0	Mm.2932	NM_007719	ENSMUSG00000037944	Ccr7	CC-CKR-7|CCR-7|CD197|Cdw197|Cmkbr7|EBI1|Ebi1h	chemokine (C-C motif) receptor 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118512315-2	chr11	118512215	118512415	+	598.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001024931, intron 5 of 14)	intron (NM_001024931, intron 5 of 14)	35483.0	NM_001359368	217364.0	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141857656-4	chr4	141857590	141857790	+	979.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_025994)	TTS (NM_025994)	-11331.0	NM_001033875	76701.0	Mm.489680	NM_001033875	ENSMUSG00000062478	Ctrc	1810044E12Rik	chymotrypsin C (caldecrin)	protein-coding	4.02202112704947	3.96348021897983	5.20904456965521	4.78208743650088	3.54920219765646	3.51121684965099	3.49391581616589	4.7685923224433	-0.826068085674805	0.0986335802753588	0.488337976400449
Merged-chr3-86947634-4	chr3	86947521	86947721	+	888.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-26737.0	NM_001195498	70762.0	Mm.44490	NM_027539	ENSMUSG00000028078	Dclk2	6330415M09Rik|AU044875|CL2|CLICK2|Click-II|Dcamkl2	doublecortin-like kinase 2	protein-coding	3.82394765644816	3.72954949961862	3.13368370576804	4.09616500970817	5.30336274609645	4.38644653337058	5.20919330163282	4.95021621601508	1.62126438528873	9.9013321704607e-05	0.00308294593549795
Merged-chr14-75787045-4	chr14	75786973	75787173	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026232)	promoter-TSS (NM_026232)	-36.0	NM_026232	67554.0	Mm.46067	NM_026232	ENSMUSG00000022003	Slc25a30	4933433D23Rik|AV025504|AV221431|AW319655|KMCP1	solute carrier family 25, member 30	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124947466-1	chr6	124947366	124947566	+	729.0	f0_balb.idr	Intergenic	L1MEf|LINE|L1	16078.0	NM_001170341	30853.0	Mm.29737	NM_145385	ENSMUSG00000030120	Mlf2	AI256856|AU018944|C77284	myeloid leukemia factor 2	protein-coding	1.15711469584104	0.756568626580739	0.743617174109403	0.733476555082313	1.47224558489528	1.17098478765882	1.62291567733967	1.5624497718251	2.89780639191906	0.0530204294896018	0.336825252383624
Merged-chr8-33929949-6	chr8	33929895	33930095	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286168)	promoter-TSS (NM_001286168)	-132.0	NM_001042675	19663.0	Mm.323997	NM_019733	ENSMUSG00000031586	Rbpms	2010300K22Rik|2700019M19Rik|AU017537|RBP-MS|hermes	RNA binding protein gene with multiple splicing	protein-coding	3.45012342330462	1.49140855868118	3.91834856739055	2.87916509075101	2.74670263045491	2.753583020175	2.77788932906081	1.40047145216632	-1.16850052163411	0.179586862351723	0.650961684137758
Merged-chr5-107726066-1	chr5	107725966	107726166	+	577.5	f0_balb.idr	promoter-TSS (NM_001267621)	promoter-TSS (NM_001267621)	-261.0	NM_001267621	14581.0	Mm.2078	NM_010278	ENSMUSG00000029275	Gfi1	AW495828|Gfi-1|Pal-1|Pal1	growth factor independent 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-4092642-1	chr3	4092542	4092742	+	543.0	f1_balb.idr	Intergenic	L1Md_F|LINE|L1	584612.0	NM_013920	30942.0	Mm.330897	NM_013920	ENSMUSG00000017688	Hnf4g	NR2A2	hepatocyte nuclear factor 4, gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-111806529-2	chr13	111806429	111806629	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011945, intron 1 of 19)	intron (NM_011945, intron 1 of 19)	2464.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-100840214-4	chr10	100840109	100840309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-98574.0	NR_152765	102639396.0	Mm.404529	NR_152765		Gm35722	-	predicted gene, 35722	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-116631209-2	chr8	116631109	116631309	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029441, intron 1 of 6)	intron (NM_029441, intron 1 of 6)	101782.0	NM_029441	75796.0	Mm.159575	NM_029441	ENSMUSG00000031758	Cdyl2	1700029M19Rik|4930453I21Rik|Gm20194	chromodomain protein, Y chromosome-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100617796-2	chr11	100617696	100617896	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019795, intron 1 of 13)	PB1D10|SINE|Alu	2372.0	NM_019795	56354.0	Mm.402409	NM_019795	ENSMUSG00000014195	Dnajc7	2010003F24Rik|2010004G07Rik|CCRP|Ttc2|mDj11|mTpr2	DnaJ heat shock protein family (Hsp40) member C7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-54997748-4	chr18	54997634	54997834	+	987.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5143.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-86147333-2	chr17	86147233	86147433	+	668.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2B2|LTR|ERVL	-2158.0	NM_030133	78586.0	Mm.146236	NM_030133	ENSMUSG00000024135	Srbd1	AI461933|C85414|D530025C17Rik	S1 RNA binding domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-125358400-4	chr5	125358283	125358483	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17289.0	NM_001205083	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	5.10152463732222	5.76364065447655	3.63295627101493	5.25180862352454	5.83739707584341	5.57662557328071	5.32564058752493	5.54477411078062	0.530161546473372	0.151767879127036	0.605292210300608
Merged-chr11-117833948-2	chr11	117833848	117834048	+	798.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027827, intron 4 of 10)	ID_B1|SINE|B4	-7934.0	NM_009387	21877.0	Mm.2661	NM_009387	ENSMUSG00000025574	Tk1	D530002A18Rik|Tk-1|Tk1a|Tk1b	thymidine kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3799833-1	chr4	3799733	3799933	+	635.0	f1_balb.idr	Intergenic	Intergenic	35822.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	-0.816197293366231	-0.80724490921107	-0.810191369837912	-0.396342611380217	-0.345796718968459	-0.804586221216491	-0.809543431923338	-0.812059261816221	0.217041845743973	0.943328585514677	1
Merged-chr12-105731205-5	chr12	105731108	105731308	+	838.47998	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030187, intron 5 of 17)	intron (NM_030187, intron 5 of 17)	25226.0	NM_030187	78801.0	Mm.36006	NM_030187	ENSMUSG00000041323	Ak7	4930502N02Rik|AK 7	adenylate kinase 7	protein-coding	1.82481337980513	1.78120274172686	1.85744931679031	2.02098956222327	1.83932149911728	1.9340849129906	1.18663529655887	1.81628931976264	-0.440905640550833	0.670689502058316	0.99359666617512
Merged-chr2-18310450-2	chr2	18310343	18310543	+	769.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_001190817, intron 3 of 12)	intron (NM_001190817, intron 3 of 12)	82387.0	NM_001190817	13418.0	Mm.246674	NM_007869	ENSMUSG00000026740	Dnajc1	4733401K02Rik|AA960110|D230036H06Rik|Dnajl1|ERdj1|ERj1p|MTJ1	DnaJ heat shock protein family (Hsp40) member C1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-91510447-4	chr6	91510324	91510524	+	802.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009531, intron 2 of 15)	intron (NM_009531, intron 2 of 15)	5464.0	NM_009531	22591.0	Mm.2806	NM_009531	ENSMUSG00000030094	Xpc	-	xeroderma pigmentosum, complementation group C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-111942099-4	chr13	111942009	111942209	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	74173.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-22814924-3	chr9	22814825	22815025	+	714.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360259, intron 21 of 22)	intron (NM_001360259, intron 21 of 22)	339210.0	NM_181316	319845.0	Mm.176725	NM_178415	ENSMUSG00000035919	Bbs9	E130103I17Rik	Bardet-Biedl syndrome 9 (human)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-42344410-4	chr6	42344376	42344576	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5352.0	NM_001289619	22793.0	Mm.282303	NM_011777	ENSMUSG00000029860	Zyx	9530098H06Rik|R75157	zyxin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-107047771-4	chr7	107047704	107047904	+	873.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11668.0	NM_147034	259036.0	Mm.377801	NM_147034	ENSMUSG00000073898	Olfr713	MOR263-1|P3	olfactory receptor 713	protein-coding	1.27427110827472	2.85097703306486	1.11123674132499	1.88217670297891	2.1370448935708	1.15069885804465	1.95945845012067	2.8137865359783	0.361573844978803	0.748166112887084	0.998431161219273
Merged-chr9-104192788-2	chr9	104192688	104192888	+	715.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359740, intron 30 of 56)	intron (NM_001359740, intron 30 of 56)	-66145.0	NM_145700	252837.0	Mm.269254	NM_145700	ENSMUSG00000079355	Ackr4	A630091E18Rik|CCBP2|CCR11|CCX-CKR|CCX-CKR1|Ccrl1|Cmkbrl1|PPR1|VSHK1	atypical chemokine receptor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-24856687-3	chr7	24856596	24856796	+	791.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12995.0	NM_182785	232973.0	Mm.189648	NM_182785	ENSMUSG00000062732	Lypd4	4933400F01Rik	Ly6/Plaur domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-184675931-4	chr1	184675814	184676014	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36583.0	NR_040627	74971.0	Mm.410816	NR_040627	ENSMUSG00000092578	4930488B22Rik	-	RIKEN cDNA 4930488B22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-44385333-4	chr19	44385239	44385439	+	953.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	22370.0	NM_009127	20249.0	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	1.70749907210805	2.18220969705157	1.67840755476294	2.42794670500496	1.96189639466079	1.2829307746243	2.2379828042084	2.26728851059055	-0.109417090330979	0.912306460666369	0.998431161219273
Merged-chr3-65680768-4	chr3	65680670	65680870	+	948.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037923, intron 2 of 2)	intron (NM_001037923, intron 2 of 2)	14542.0	NM_001166659	624866.0	Mm.296317	NM_001037923	ENSMUSG00000074579	Lekr1	EG546798|EG624866|Gm6534	leucine, glutamate and lysine rich 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-128947495-2	chr4	128947395	128947595	+	616.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_172875, exon 8 of 11)	exon (NM_172875, exon 8 of 11)	14960.0	NM_172875	242669.0	Mm.215814	NM_172875	ENSMUSG00000028789	Azin2	4933429I20Rik|Adc|Azi2|B930082O19|ODC-p|Odcp	antizyme inhibitor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-62542135-2	chr11	62542035	62542235	+	993.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2874.0	NM_028448	73139.0	Mm.390409	NM_028448	ENSMUSG00000018509	Cenpv	3110013H01Rik|AA671303|Prr6	centromere protein V	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-60865772-3	chr8	60865686	60865886	+	821.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24607.0	NM_028299	72612.0	Mm.25263	NM_028299	ENSMUSG00000038005	Hpf1	2700029M09Rik|C230006B22Rik|C4orf27	histone PARylation factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-61529697-2	chr8	61529597	61529797	+	654.416687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001293772, intron 16 of 21)	intron (NM_001293772, intron 16 of 21)	41963.0	NM_145595	234309.0	Mm.29059	NM_145595	ENSMUSG00000031641	Cbr4	A730083J17Rik|BC009118	carbonyl reductase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-120666491-4	chr4	120666409	120666609	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019563)	promoter-TSS (NM_019563)	-54.0	NM_019563	56222.0	Mm.272646	NM_019563	ENSMUSG00000070803	Cited4	MRG-2|Mrg2	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 4	protein-coding	3.16580936555581	2.08498794671203	2.92037752022932	3.00179965486402	2.53785483525126	2.09953900132908	2.5122008533418	2.7634166800495	-0.716004742721838	0.338135743852604	0.838444334818865
Merged-chr14-32159846-4	chr14	32159716	32159916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033988)	promoter-TSS (NM_001033988)	-71.0	NM_001033988	27057.0	Mm.371598	NM_019744	ENSMUSG00000056234	Ncoa4	ARA70|Rfg	nuclear receptor coactivator 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-31610525-3	chr12	31610418	31610618	+	839.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007530, intron 5 of 6)	intron (NM_007530, intron 5 of 6)	24079.0	NM_007530	12033.0	Mm.242379	NM_007530	ENSMUSG00000020650	Bcap29	AW208404|Bap29	B cell receptor associated protein 29	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-60837886-1	chr19	60837786	60837986	+	641.0	f1_balb.idr	3' UTR (NM_001362384, exon 15 of 15)	3' UTR (NM_001362384, exon 15 of 15)	23542.0	NM_001362385	94281.0	Mm.48179	NM_053198	ENSMUSG00000063698	Sfxn4	-	sideroflexin 4	protein-coding	1.24147917330091	0.449002795612685	0.429241187022195	0.41339027851055	0.824673103172833	2.4431934133777	0.936963478673228	0.416199695964599	2.45444169668487	0.120221613015484	0.544353406023213
Merged-chr11-5485432-4	chr11	5485334	5485534	+	998.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35207.0	NM_013842	22433.0	Mm.469937	NM_013842	ENSMUSG00000020484	Xbp1	D11Ertd39e|TREB-5|TREB5|XBP-1	X-box binding protein 1	protein-coding	1.28036460675466	1.28733669348111	1.07948130010425	1.21343496171228	1.88318520429551	1.11560742224035	1.08604770214467	1.58255565419757	1.01226592364932	0.407260437730666	0.891845785649541
Merged-chr10-42478553-4	chr10	42478478	42478678	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145743)	promoter-TSS (NM_145743)	-13.0	NM_145743	215951.0	Mm.89646	NM_145743	ENSMUSG00000038302	Afg1l	CG8520|Lace1	AFG1 like ATPase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4632506-2	chr16	4632406	4632606	+	703.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_030205, exon 17 of 28)	exon (NM_030205, exon 17 of 28)	-7439.0	NM_139307	246154.0	Mm.482140	NM_139307	ENSMUSG00000039646	Vasn	2610528G05Rik|Atia|Slitl2	vasorin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-151002125-4	chr1	151002029	151002229	+	866.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	-8694.0	NM_001024720	545370.0	Mm.379425	NM_001024720	ENSMUSG00000066842	Hmcn1	EG545370|FIBL-6|Gm201	hemicentin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123453869-2	chr5	123453769	123453969	+	951.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_133917, exon 17 of 17)	3' UTR (NM_133917, exon 17 of 17)	28232.0	NM_029594	76399.0	Mm.75049	NM_029594	ENSMUSG00000029437	Il31	1700013B14Rik	interleukin 31	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-107441195-4	chr11	107441109	107441309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 1 of 9)	intron (NR_153311, intron 1 of 9)	29511.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-84848687-3	chr18	84848589	84848789	+	952.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MD2|LINE|L1	-2649.0	NM_025797	109672.0	Mm.31018	NM_025797	ENSMUSG00000024646	Cyb5a	0610009N12Rik|Cyb5	cytochrome b5 type A (microsomal)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-50374785-2	chr16	50374685	50374885	+	740.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_027444, intron 2 of 16)	B3A|SINE|B2	57604.0	NM_027444	70508.0	Mm.28940	NM_027444	ENSMUSG00000022641	Bbx	5530401J07Rik|5730403O13Rik	bobby sox HMG box containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-145260015-3	chr7	145259948	145260148	+	784.333313	f1_balb.idr|f1_c57bl6.idr	intron (NR_132643, intron 15 of 22)	intron (NR_132643, intron 15 of 22)	23963.0	NR_132644	233979.0	Mm.102235	NM_146206	ENSMUSG00000048677	Tpcn2	D830047E22Rik|Gm35086	two pore segment channel 2	protein-coding	0.863238414671053	0.723741127415545	1.63350951838552	0.696587797035694	0.679272025543333	1.82292331559758	1.54152597126522	1.23668195050152	1.2429393915378	0.39981884526723	0.885176145862419
Merged-chr17-27850745-5	chr17	27850643	27850843	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011432, intron 5 of 5)	intron (NM_011432, intron 5 of 5)	-5764.0	NM_001080769	224648.0	Mm.291291	NM_001080769	ENSMUSG00000039512	Uhrf1bp1	1110020K19Rik|AA408674|F830021D11Rik|mKIAA4127	UHRF1 (ICBP90) binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-195092319-4	chr1	195092205	195092405	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_132621)	promoter-TSS (NR_132621)	-57.0	NM_010778	17221.0	Mm.12884	NM_010778	ENSMUSG00000016493	Cd46	Mcp	CD46 antigen, complement regulatory protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-27657962-1	chr7	27657862	27658062	+	542.0	f1_c57bl6.idr	exon (NM_001290528, exon 9 of 10)	exon (NM_001290528, exon 9 of 10)	4038.0	NM_028417	73032.0	Mm.44095	NM_028417	ENSMUSG00000007944	Ttc9b	2900074C18Rik	tetratricopeptide repeat domain 9B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-37857938-4	chr13	37857851	37858051	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039188, intron 1 of 9)	intron (NM_001039188, intron 1 of 9)	-30483.0	NR_033218	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-122604239-4	chr10	122604137	122604337	+	919.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34346.0	NR_040616	319272.0	Mm.411763	NR_040616	ENSMUSG00000112095	A130077B15Rik	-	RIKEN cDNA A130077B15 gene	ncRNA	-0.32326584982899	-0.562018396995413	-0.565186700011719	-0.0670434157368543	-0.317238376629306	-0.56130177911771	-0.564489428799003	-0.567194854344348	-1.53500505152074	0.569038873549166	1
Merged-chr16-4210464-3	chr16	4210360	4210560	+	711.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025432, intron 1 of 30)	intron (NM_001025432, intron 1 of 30)	2944.0	NM_001025432	12914.0	Mm.132238	NM_001025432	ENSMUSG00000022521	Crebbp	AW558298|CBP|CBP/p300|KAT3A|p300/CBP	CREB binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-135517104-4	chr1	135517020	135517220	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173437, intron 3 of 28)	intron (NM_173437, intron 3 of 28)	-62437.0	NR_049188	100885827.0		NR_049188	ENSMUSG00000093515	Mir1231	Gm23720|mir-1231|mmu-mir-1231	microRNA 1231	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-52117087-3	chr1	52116958	52117158	+	866.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2380.0	NM_001357627	20846.0	Mm.277406	NM_009283	ENSMUSG00000026104	Stat1	2010005J02Rik|AA408197	signal transducer and activator of transcription 1	protein-coding	0.38847839937396	0.060115349436254	-0.123436808029055	-0.126670095298292	0.120014676847835	-0.118274724556834	-0.122510126088177	0.273880054437119	-0.180374718158206	0.935386302586304	1
Merged-chr4-101648832-4	chr4	101648724	101648924	+	906.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175036, intron 1 of 3)	intron (NM_175036, intron 1 of 3)	1041.0	NM_175036	230514.0	Mm.4756	NM_175036	ENSMUSG00000035212	Leprot	LEPR|OB-RGRP|Obrgrp|VPS55	leptin receptor overlapping transcript	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-87466448-4	chr6	87466357	87466557	+	780.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_104483, exon 8 of 11)	non-coding (NR_104483, exon 8 of 11)	29870.0	NR_104483	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-131922233-3	chr4	131922189	131922389	+	871.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001201367, exon 1 of 1)	exon (NM_001201367, exon 1 of 1)	518.0	NM_001201367	623230.0	Mm.421179	NM_001201367	ENSMUSG00000070720	Tmem200b	EG623230	transmembrane protein 200B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-59770597-2	chr9	59770497	59770697	+	634.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_173018, intron 1 of 43)	5S|rRNA|rRNA	19423.0	NM_173018	270163.0	Mm.249545	NM_173018	ENSMUSG00000039585	Myo9a	4732465J09Rik|C130068I12Rik|C230003M11	myosin IXa	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-16086945-4	chr16	16086849	16087049	+	997.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355731, intron 5 of 18)	intron (NM_001355731, intron 5 of 18)	59902.0	NM_001355731	224008.0	Mm.244703	NM_146068	ENSMUSG00000041974	Spidr	2310008H04Rik|Kiaa0146	scaffolding protein involved in DNA repair	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-43639533-2	chr7	43639433	43639633	+	858.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028236, intron 3 of 5)	intron (NM_028236, intron 3 of 5)	4794.0	NM_028236	72431.0	Mm.158821	NM_028236	ENSMUSG00000030472	Ceacam18	2010110O04Rik	carcinoembryonic antigen-related cell adhesion molecule 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-13917862-3	chr14	13917758	13917958	+	946.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43455.0	NM_001285780	66231.0	Mm.295875	NM_025435	ENSMUSG00000053453	Thoc7	Nif3l1bp1	THO complex 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106760867-2	chr11	106760767	106760967	+	621.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_073165, intron 4 of 9)	intron (NR_073165, intron 4 of 9)	9641.0	NM_001033435	380732.0	Mm.343952	NM_001033435	ENSMUSG00000040528	Milr1	Allergin-1|Gm885|Mca32	mast cell immunoglobulin like receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-103207652-4	chr3	103207548	103207748	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35993.0	NM_001356331	68183.0	Mm.104919	NM_026602	ENSMUSG00000005687	Bcas2	6430539P16Rik|AI132645|C76366|C80030	breast carcinoma amplified sequence 2	protein-coding	4.87498304664996	5.21536692318926	4.32002698208755	5.16378865719569	4.81430726370054	4.78085831539109	4.82087999315714	5.12546331575364	-0.049782361763466	0.883894864250458	0.998431161219273
Merged-chr12-102785173-2	chr12	102785073	102785273	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_172806, exon 12 of 12)	exon (NM_172806, exon 12 of 12)	27198.0	NM_025666	66622.0	Mm.34261	NM_025666	ENSMUSG00000041712	Ubr7	5730410I19Rik|AA589405|AW557761	ubiquitin protein ligase E3 component n-recognin 7 (putative)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-48746600-2	chr10	48746500	48746700	+	560.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2A1|LINE|L1	1041337.0	NM_001358866	14806.0	Mm.185993	NM_010349	ENSMUSG00000056073	Grik2	AW124492|C130030K03Rik|GluK2|Glur-6|Glur6|Glurbeta2	glutamate receptor, ionotropic, kainate 2 (beta 2)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-130795321-2	chr3	130795221	130795421	+	673.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64923.0	NM_001005859	68436.0	Mm.140568	NM_026724	ENSMUSG00000062006	Rpl34	1100001I22Rik	ribosomal protein L34	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-37348368-4	chr9	37348241	37348441	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081429)	promoter-TSS (NM_001081429)	51.0	NM_001081429	245902.0	Mm.390150	NM_001081429	ENSMUSG00000034303	Ccdc15	A630039F14Rik|D030074L19	coiled-coil domain containing 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-148625889-3	chr4	148625789	148625989	+	932.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003898, intron 1 of 6)	intron (NM_001003898, intron 1 of 6)	1107.0	NR_027864	230908.0	Mm.22453	NM_145556	ENSMUSG00000041459	Tardbp	1190002A23Rik|C85084|TDP-43|Tdp43	TAR DNA binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-81126893-4	chr3	81126798	81126998	+	956.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019971, intron 1 of 5)	intron (NM_019971, intron 1 of 5)	90482.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	2.33164842176247	2.48580709567583	2.81849073884917	2.45385664944664	2.11822035221253	2.02116030693929	3.0012520961298	2.46617561902819	-0.141098530632107	0.858460485087181	0.998431161219273
Merged-chr14-102928107-2	chr14	102928007	102928207	+	543.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54525.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115165140-4	chr11	115165040	115165240	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012030, intron 1 of 5)	intron (NM_012030, intron 1 of 5)	1799.0	NM_012030	26941.0	Mm.27842	NM_012030	ENSMUSG00000020733	Slc9a3r1	EBP-50|NHE-RF|NHERF-1|NHERF1	solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-105652084-3	chr5	105651991	105652191	+	899.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47878.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	2.48328044482857	1.49682757845981	1.42283344993393	1.67031668909705	3.97093966591894	3.94074115295978	4.09709508826694	4.87760189239117	4.11782912671398	5.59015028059337e-08	5.43815862701832e-06
Merged-chr5-29955460-2	chr5	29955360	29955560	+	701.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57654.0	NM_001314054	16193.0	Mm.1019	NM_031168	ENSMUSG00000025746	Il6	Il-6	interleukin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-55748055-2	chr16	55747955	55748155	+	588.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A2|LTR|ERVL-MaLR	74083.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-93566002-2	chr2	93565902	93566102	+	555.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-76432.0	NM_007442	11695.0	Mm.389389	NM_007442	ENSMUSG00000040310	Alx4	lst	aristaless-like homeobox 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-95941949-4	chr10	95941829	95942029	+	981.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001932, intron 1 of 28)	intron (NM_001001932, intron 1 of 28)	1266.0	NM_001001932	216238.0	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-17608799-2	chr17	17608698	17608898	+	764.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_172827, intron 1 of 17)	intron (NM_172827, intron 1 of 17)	15691.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	0.741278378030944	0.645505607496146	0.298361550792412	0.293637200392042	0.751303613673814	0.78845150740624	0.299713315301441	0.454363500719661	0.500084556501191	0.783022741617742	1
Merged-chr8-126826620-4	chr8	126826513	126826713	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22407.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-3643631-4	chr7	3643546	3643746	+	866.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1623.0	NM_146176	232791.0	Mm.358731	NM_146176	ENSMUSG00000035632	Cnot3	A930039N10Rik	CCR4-NOT transcription complex, subunit 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-41083517-2	chr9	41083417	41083617	+	738.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_176860, intron 1 of 13)	intron (NM_176860, intron 1 of 13)	-4011.0	NM_001357412	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	0.679872171987314	1.55074701270848	0.708002643902023	1.62365645318744	1.01175041420883	0.724286301568841	1.1027873209442	1.54348370132148	-0.366900279880993	0.806107520275061	0.998431161219273
Merged-chr1-173742467-4	chr1	173742353	173742553	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001204910)	promoter-TSS (NM_001204910)	-644.0	NM_001204910	226691.0	Mm.440876	NM_001204910	ENSMUSG00000073490	Ifi207	AI607873|Pyhin-A|pyhinA	interferon activated gene 207	protein-coding	5.41119711867972	5.0932208563395	4.46296338832486	5.06690595375682	5.337357147715	4.90728947855146	5.16145901327522	5.0219833356012	0.0765113321486117	0.81402218304775	0.998431161219273
Merged-chr4-133675230-4	chr4	133675189	133675389	+	733.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	-2123.0	NM_001356466	230801.0	Mm.217004	NM_178698	ENSMUSG00000043257	Pigv	B330013B03|D430024F16Rik	phosphatidylinositol glycan anchor biosynthesis, class V	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-99128018-6	chr10	99127910	99128110	+	895.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153333, intron 3 of 12)	intron (NR_153333, intron 3 of 12)	19875.0	NM_015737	14426.0	Mm.314	NM_015737	ENSMUSG00000090035	Galnt4	AV011803	polypeptide N-acetylgalactosaminyltransferase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-66817185-4	chr15	66817070	66817270	+	959.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009192, intron 1 of 8)	intron (NM_009192, intron 1 of 8)	14659.0	NM_001029841	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-5131898-3	chr18	5131816	5132016	+	832.233337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	BGLII_B|LTR|ERVK	33815.0	NR_153824	102637682.0	Mm.451914	NR_153824		Gm26682	Gm38715	predicted gene, 26682	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118657285-3	chr9	118657181	118657381	+	864.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 5 of 27)	ORR1A2|LTR|ERVL-MaLR	50572.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0.996213420598568	0.945202299132706	1.21792277912998	1.65539471386331	1.00412800521102	0.737883695593812	0.923975487808954	1.30316039401428	-1.01418373744929	0.456676942050202	0.919264728457769
Merged-chr8-115425373-2	chr8	115425273	115425473	+	640.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	281521.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-137411137-2	chr6	137411037	137411237	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011216, intron 13 of 26)	intron (NM_011216, intron 13 of 26)	416.0	NM_001164403	19277.0	Mm.186361	NM_011216	ENSMUSG00000030223	Ptpro	D28|GLEPP1|PTPBK|PTPROt|PTPU2|PTPoc|PTPphi|Ptpn15|R-PTP-O	protein tyrosine phosphatase, receptor type, O	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-113238663-4	chr6	113238568	113238768	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362185, intron 1 of 16)	intron (NM_001362185, intron 1 of 16)	825.0	NR_155433	97287.0	Mm.197816	NM_026849	ENSMUSG00000030269	Mtmr14	1110061O04Rik|AW553738|C76151	myotubularin related protein 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45128093-2	chr7	45127993	45128193	+	600.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_000002)	promoter-TSS (NR_000002)	-630.0	NR_000002	27209.0		NR_000002	ENSMUSG00000065219	Snord32a	Rnu32|Rnu32a|U32|U32A	small nucleolar RNA, C/D box 32A	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-49243591-4	chr13	49243489	49243689	+	992.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028340, intron 1 of 4)	intron (NM_028340, intron 1 of 4)	4705.0	NM_001360772	66329.0	Mm.34308	NM_025491	ENSMUSG00000021384	Susd3	1700017I11Rik|2810440J20Rik	sushi domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-11808636-4	chr19	11808529	11808729	+	974.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011502, intron 1 of 10)	intron (NM_011502, intron 1 of 10)	10774.0	NM_001286543	20908.0	Mm.272264	NM_011502	ENSMUSG00000041488	Stx3	Syn-3	syntaxin 3	protein-coding	0.273552153534166	1.30940019126359	0.935431069022217	0.285550675438797	0.446595755256267	0.303859735982338	0.82039552442346	0.286801258642709	-1.61180332537538	0.386948360592617	1
Merged-chr10-22747798-1	chr10	22747698	22747898	+	613.0	f0_balb.idr	Intergenic	Intergenic	-16351.0	NM_011603	237336.0	Mm.86670	NM_011603	ENSMUSG00000071359	Tbpl1	4732475G08|AW011832|AW491032|D18347|STD|TLF|TRF2|TRP|Tlp	TATA box binding protein-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-39770772-3	chr10	39770679	39770879	+	896.4166869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011264, intron 1 of 31)	B2_Mm1a|SINE|B2	38619.0	NM_011264	19714.0	Mm.439723	NM_011264	ENSMUSG00000019841	Rev3l	Rev|Rev3|Sez4	REV3 like, DNA directed polymerase zeta catalytic subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150155895-2	chr4	150155795	150155995	+	653.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085529, intron 4 of 11)	ORR1B2|LTR|ERVL-MaLR	6923.0	NM_001085529	435818.0	Mm.359648	NM_001085529	ENSMUSG00000062064	Slc2a7	-	solute carrier family 2 (facilitated glucose transporter), member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-35565756-1	chr8	35565656	35565856	+	581.0	f1_balb.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-22042.0	NM_001081279	52065.0	Mm.103246	NM_001081279	ENSMUSG00000070056	Mfhas1	2310066G09Rik|D8Ertd91e	malignant fibrous histiocytoma amplified sequence 1	protein-coding	0.855115397297887	0.549199012805418	0.535274503416466	0.524294795798787	1.23322819424681	1.31827001083383	0.538374589829314	1.8967507636216	3.47210765977357	0.0404512088201441	0.286727217462046
Merged-chr9-41028655-4	chr9	41028556	41028756	+	730.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176860, intron 8 of 13)	intron (NM_176860, intron 8 of 13)	-24028.0	NM_001281954	54698.0	Mm.42791	NM_019465	ENSMUSG00000032021	Crtam	-	cytotoxic and regulatory T cell molecule	protein-coding	-1.50656692908976	-1.32300916970808	-1.48432959969362	-1.49224814447371	-1.35351200182653	-1.47260062812473	-1.48214732553574	-1.33915025220212	0.708992296182827	0.825600276422399	1
Merged-chr11-53737760-4	chr11	53737679	53737879	+	951.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16985.0	NM_010558	16191.0	Mm.4461	NM_010558	ENSMUSG00000036117	Il5	Il-5	interleukin 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-108213787-4	chr6	108213680	108213880	+	936.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 1 of 61)	intron (NM_010585, intron 1 of 61)	684.0	NM_010585	16438.0	Mm.227912	NM_010585	ENSMUSG00000030102	Itpr1	D6Pas2|Gm10429|IP3R 1|IP3R1|InsP3R|Ip3r|Itpr-1|P400|Pcp-1|Pcp1|insP3R1|opt|wblo	inositol 1,4,5-trisphosphate receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124113155-2	chr5	124113055	124113255	+	933.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361483, intron 2 of 5)	intron (NM_001361483, intron 2 of 5)	834.0	NM_001347478	66627.0	Mm.7050	NM_025671	ENSMUSG00000023707	Ogfod2	1300006G11Rik|5730405M13Rik|AU041636|AW552395	2-oxoglutarate and iron-dependent oxygenase domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-174432630-2	chr2	174432530	174432730	+	652.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_022325, intron 3 of 5)	intron (NM_022325, intron 3 of 5)	6409.0	NM_022325	64138.0	Mm.156919	NM_022325	ENSMUSG00000016256	Ctsz	AI787083|AU019819|CTSX|D2Wsu143e	cathepsin Z	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-22935076-3	chr8	22934981	22935181	+	566.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081149, intron 16 of 17)	C-rich|Low_complexity|Low_complexity	-39755.0	NM_001110783	11733.0	Mm.334444	NM_031158	ENSMUSG00000031543	Ank1	Ank-1|nb|pale	ankyrin 1, erythroid	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120739602-4	chr8	120739471	120739671	+	855.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301811, intron 1 of 8)	intron (NM_001301811, intron 1 of 8)	932.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-76256597-4	chr13	76256527	76256727	+	990.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-128334.0	NM_030174	78771.0	Mm.316249	NM_030174	ENSMUSG00000021596	Mctp1	2810465F10Rik	multiple C2 domains, transmembrane 1	protein-coding	4.55058326540127	4.73438263566328	4.73218753983082	3.86446595504544	6.11180310865801	5.47330160415252	6.17027177451543	5.78144744562233	1.63357902771653	2.61014005796057e-07	2.07852613376621e-05
Merged-chr2-26507436-4	chr2	26507381	26507581	+	900.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3554.0	NR_132655	102639736.0		NR_132655		Gm35978	-	predicted gene, 35978	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-40652924-1	chr9	40652824	40653024	+	620.666687	f1_balb.idr	Intergenic	RMER17A|LTR|ERVK	-33040.0	NM_133733	71566.0	Mm.280560	NM_133733	ENSMUSG00000032024	Clmp	9030425E11Rik|ACAM|ASP5|AW557819	CXADR-like membrane protein	protein-coding	-0.526495596628631	-0.333573726280385	-0.519739059366671	-0.522287457637628	-0.0722133619796545	-0.515670768759926	-0.519008692536233	-0.115204328108105	2.38287340993826	0.364803718049998	1
Merged-chr6-17640241-2	chr6	17640141	17640341	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007604, intron 1 of 9)	ID_B1|SINE|B4	3231.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	1.25877879085653	0.64132595697366	1.49859829761492	0.619679502617066	1.2721015738482	0.644036487348976	1.51391225874125	0.621348930784529	0.0413123291014144	0.979851432100712	0.998431161219273
Merged-chr6-124637257-4	chr6	124637150	124637350	+	990.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1165.0	NM_173864	317677.0	Mm.483270	NM_173864	ENSMUSG00000079343	C1s2	C1sb|EG317677|Gm5077	complement component 1, s subcomponent 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-173021899-4	chr2	173021802	173022002	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019547)	promoter-TSS (NM_019547)	0.0	NM_019547	56190.0	Mm.485782	NM_019547	ENSMUSG00000027510	Rbm38	Rnpc1|Seb4|Seb4l	RNA binding motif protein 38	protein-coding	5.13225270566326	4.6455133166561	3.96688580460201	5.33760897736947	5.00465077734968	4.8830893873475	4.77968932339109	5.55620391712625	0.262510924179794	0.485321551369606	0.931776801449365
Merged-chr16-22807657-2	chr16	22807557	22807757	+	755.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009967, intron 1 of 2)	intron (NM_009967, intron 1 of 2)	3753.0	NM_009967	12970.0	Mm.6253	NM_009967	ENSMUSG00000033501	Crygs	AI327013|Opj|rncat	crystallin, gamma S	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-117087717-4	chr2	117087634	117087834	+	965.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33337.0	NM_001277256	114715.0	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5578461-2	chr17	5578361	5578561	+	854.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	85861.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-29861996-1	chr11	29861896	29862096	+	662.0	f1_c57bl6.idr	intron (NM_146016, intron 7 of 41)	intron (NM_146016, intron 7 of 41)	-36328.0	NM_176829	216622.0	Mm.443260	NM_176829	ENSMUSG00000078157	4931440F15Rik	Fem1ab	RIKEN cDNA 4931440F15 gene	protein-coding	-0.0620812661629918	0.42505673111595	-0.0523928754953287	-0.0560427408026173	0.0782560118747623	0.299546458920242	-0.0513477721603633	0.461420897462886	1.05844243472379	0.626278301219328	1
Merged-chr16-4919157-2	chr16	4919057	4919257	+	741.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357062, intron 8 of 17)	intron (NM_001357062, intron 8 of 17)	-19954.0	NM_001316715	66911.0	Mm.428698	NM_025839	ENSMUSG00000022516	Nudt16l1	1110001K21Rik|5330437I08Rik|Sdos	nudix (nucleoside diphosphate linked moiety X)-type motif 16-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-102510799-4	chr15	102510711	102510911	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358844)	promoter-TSS (NM_001358844)	-111.0	NM_001358844	26404.0	Mm.172897	NM_009582	ENSMUSG00000023050	Map3k12	DLK|MUK|Zpk	mitogen-activated protein kinase kinase kinase 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-130690918-4	chr3	130690779	130690979	+	822.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	18565.0	NM_025509	66357.0	Mm.300697	NM_025509	ENSMUSG00000041084	Ostc	2310008M10Rik|5730557H03Rik	oligosaccharyltransferase complex subunit (non-catalytic)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-12445657-2	chr19	12445557	12445757	+	672.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-15122.0	NM_010821	17476.0	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	1.11592751196677	1.25645135103448	3.04099310395353	2.534893497305	1.94012521221579	2.20925421857034	3.53085726894457	1.88711714733126	0.665923460476977	0.520751346041312	0.947836760490745
Merged-chr5-137826587-4	chr5	137826483	137826683	+	868.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153510, intron 4 of 6)	intron (NM_153510, intron 4 of 6)	9695.0	NM_153510	231805.0	Mm.379385	NM_153510	ENSMUSG00000046245	Pilra	AV021745|FDF03	paired immunoglobin-like type 2 receptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-24132541-2	chr10	24132441	24132641	+	723.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16748.0	NM_001358563	53331.0	Mm.248042	NM_016797	ENSMUSG00000019998	Stx7	AI315064|AI317144|AW107239|Syn7	syntaxin 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-37958753-4	chr13	37958647	37958847	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	35461.0	NM_025965	107513.0	Mm.426670	NM_025965	ENSMUSG00000021427	Ssr1	2510001K09Rik|6330400D04|AI159733|AI452176|SSR|TRAPA	signal sequence receptor, alpha	protein-coding	2.85170817066147	2.86854125166027	3.09085489942677	3.09282725227419	2.68337567367489	2.23718020645397	3.69402449989129	3.26719898580441	0.201708871173386	0.764581309552757	0.998431161219273
Merged-chr2-16356401-6	chr2	16356281	16356481	+	953.2315060000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026162)	promoter-TSS (NM_026162)	77.0	NM_026162	67448.0	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-95905828-2	chr15	95905728	95905928	+	648.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 3 of 19)	intron (NM_175344, intron 3 of 19)	-75756.0	NR_155276	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-82991055-1	chr15	82990955	82991155	+	545.0	f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-31759.0	NR_037241	100526477.0		NR_037241	ENSMUSG00000092751	Mir3080	mmu-mir-3080	microRNA 3080	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95629958-3	chr3	95629848	95630048	+	829.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001026212, exon 3 of 3)	3' UTR (NM_001026212, exon 3 of 3)	4968.0	NM_001026212	56205.0	Mm.241365	NM_019561	ENSMUSG00000038619	Ensa	1700020C18Rik|2610007F17Rik|AI451924	endosulfine alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-5126635-3	chr15	5126526	5126726	+	815.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15-int|LTR|ERVL	8205.0	NR_028091	100302529.0		NR_028091		Snord72	MBII-240	small nucleolar RNA, C/D box 72	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-21613289-3	chr14	21613176	21613376	+	933.1333619999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017479, intron 3 of 16)	intron (NM_017479, intron 3 of 16)	101300.0	NM_001013826	435391.0	Mm.295860	NM_001013826	ENSMUSG00000063821	Dupd1	EG435391	dual specificity phosphatase and pro isomerase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-162932423-4	chr2	162932316	162932516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026499, intron 2 of 5)	intron (NM_026499, intron 2 of 5)	908.0	NM_026499	67996.0	Mm.24042	NM_026499	ENSMUSG00000016921	Srsf6	1210001E11Rik|AI314910|AW146126|Sfrs6	serine/arginine-rich splicing factor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-33872107-2	chr2	33872007	33872207	+	593.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175184, intron 2 of 9)	RMER4B|LTR|ERVK	15839.0	NM_175184	72543.0	Mm.254914	NM_175184	ENSMUSG00000038740	Mvb12b	2610200O14Rik|2610528K11Rik|AI414895|Fam125b	multivesicular body subunit 12B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-4558851-2	chr2	4558751	4558951	+	647.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177844)	promoter-TSS (NM_001177844)	-903.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-32832880-2	chr19	32832780	32832980	+	780.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4A|LINE|L1	75303.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-90461940-2	chr6	90461840	90462040	+	895.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023184)	promoter-TSS (NM_023184)	-636.0	NM_001355668	66277.0	Mm.38343	NM_023184	ENSMUSG00000030087	Klf15	1810013I09Rik|AV048136|AW494632|CKLF|KKLF	Kruppel-like factor 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122371870-3	chr5	122371767	122371967	+	864.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026883)	promoter-TSS (NM_026883)	96.0	NM_026883	68948.0	Mm.474469	NM_026883	ENSMUSG00000029463	Fam216a	1500011H22Rik	family with sequence similarity 216, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5645094-1	chr19	5644994	5645194	+	1000.0	f1_c57bl6.idr	intron (NM_009045, intron 8 of 10)	B1_Mur2|SINE|Alu	7604.0	NM_009045	19697.0	Mm.249966	NM_009045	ENSMUSG00000024927	Rela	p65	v-rel reticuloendotheliosis viral oncogene homolog A (avian)	protein-coding	-0.307606686405728	0.439951825910899	-0.298107648570815	0.132134536984069	-0.306724096527783	-0.292443777179915	-0.29708782230778	-0.130555333356203	-2.83193174554428	0.243810839280337	1
Merged-chr17-71161756-4	chr17	71161635	71161835	+	870.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	IMPB_01|Satellite|Satellite	-21797.0	NM_001357791	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	1.43464453811124	2.58521153797069	1.72553127932291	1.81792023917378	1.44620947245903	2.52105345398023	1.7396441475788	1.08237485557916	-0.379110307063174	0.72703829545841	0.998431161219273
Merged-chr3-97991632-4	chr3	97991512	97991712	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21926.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140996114-2	chr5	140996014	140996214	+	739.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175362, intron 1 of 24)	B1_Mus1|SINE|Alu	4482.0	NM_175362	108723.0	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3350526-4	chr12	3350406	3350606	+	967.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14626.0	NM_008445	16570.0	Mm.7688	NM_008445	ENSMUSG00000020668	Kif3c	mKIAA4058	kinesin family member 3C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-45252201-1	chr9	45252101	45252301	+	540.0	f0_c57.idr	Intergenic	Intergenic	14506.0	NR_106054	102466803.0		NR_106054	ENSMUSG00000098361	Mir7086	Gm27643|mmu-mir-7086	microRNA 7086	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-39448945-1	chr7	39448845	39449045	+	614.0	f0_balb.idr	promoter-TSS (NM_001243021)	promoter-TSS (NM_001243021)	-573.0	NM_001243021	233147.0	Mm.148946	NM_001243021	ENSMUSG00000030424	Zfp939	9430025M13Rik	zinc finger protein 939	protein-coding	1.2121496439558	2.15770297997004	2.54477717407538	1.50378125765182	1.93397089978275	2.55379975301016	2.35680793110304	2.80231184864329	1.11784831444127	0.247654796537281	0.747080687713142
Merged-chr19-10222344-2	chr19	10222244	10222444	+	770.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033481, intron 7 of 25)	intron (NM_001033481, intron 7 of 25)	16311.0	NM_001163431	69038.0	Mm.375100	NM_026919	ENSMUSG00000036372	Tmem258	1810006K21Rik	transmembrane protein 258	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-79028098-4	chr8	79027995	79028195	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178267)	promoter-TSS (NM_178267)	-342.0	NM_001294279	622675.0	Mm.48724	NM_178267	ENSMUSG00000071064	Zfp827	2810449M09Rik|D630040G17Rik|Znf827	zinc finger protein 827	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84066649-4	chr8	84066575	84066775	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009055)	promoter-TSS (NM_009055)	-161.0	NM_009055	19724.0	Mm.7892	NM_009055	ENSMUSG00000031706	Rfx1	AI047719|AI385641	regulatory factor X, 1 (influences HLA class II expression)	protein-coding	6.80464889386611	6.62355303209339	7.1585957535133	6.78776711978086	7.20154346787216	6.97345803020894	7.07797999369131	7.04138003339846	0.233058502961132	0.18658997148622	0.663779347072051
Merged-chr4-117190109-4	chr4	117190111	117190311	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7587.0	NM_134471	73804.0	Mm.247651	NM_134471	ENSMUSG00000028678	Kif2c	4930402F02Rik|ESTM5|Knsl6|MCAK|X83316	kinesin family member 2C	protein-coding	3.64504101530222	4.28196990689446	3.99495448956973	2.54226388743094	2.69462960206726	3.59373258880305	3.77964149272052	2.70927282512807	-0.714461153974659	0.250571638115234	0.748509191602971
Merged-chr17-55952632-4	chr17	55952517	55952717	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015766)	promoter-TSS (NM_015766)	-6.0	NM_015766	50498.0	Mm.256798	NM_015766	ENSMUSG00000003206	Ebi3	EBI-3|IL-27	Epstein-Barr virus induced gene 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-5019415-4	chr1	5019310	5019510	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290372)	promoter-TSS (NM_001290372)	129.0	NM_021374	58175.0	Mm.103771	NM_021374	ENSMUSG00000002459	Rgs20	2900073E09Rik|Rgsz1	regulator of G-protein signaling 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101647177-2	chr11	101647077	101647277	+	788.125	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-18364.0	NM_025404	80981.0	Mm.266840	NM_025404	ENSMUSG00000034936	Arl4d	1110036H21Rik|ARL6|AW456149|Arf4l|Arfl4|Arl5	ADP-ribosylation factor-like 4D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-11466917-2	chr16	11466817	11467017	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028964, intron 13 of 20)	ORR1E|LTR|ERVL-MaLR	61269.0	NM_001290148	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-118560854-4	chr5	118560782	118560982	+	989.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347445, intron 1 of 30)	CpG-11438	163.0	NM_172424	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80398940-4	chr10	80398857	80399057	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001306143, intron 1 of 6)	CpG	574.0	NM_013595	17192.0	Mm.7142	NM_013595	ENSMUSG00000035478	Mbd3	AI181826|AU019209	methyl-CpG binding domain protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64343806-1	chr5	64343706	64343906	+	671.0	f1_c57bl6.idr	intron (NM_001289514, intron 17 of 18)	MTE2b|LTR|ERVL-MaLR	113449.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	2.89857129359595	1.20797935516975	1.17263332259763	2.59791284299591	2.30781158294847	2.79955843832178	2.03357182947643	1.14911295984473	-0.0239788793677576	0.983235384126484	0.998431161219273
Merged-chr12-51706991-3	chr12	51706892	51707092	+	906.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001329698, intron 1 of 5)	intron (NM_001329698, intron 1 of 5)	-15078.0	NM_052973	94186.0	Mm.65979	NM_052973	ENSMUSG00000020954	Strn3	Gs2na|SG2NA	striatin, calmodulin binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-110097347-4	chr7	110097152	110097352	+	990.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24807.0	NM_001355058	22390.0	Mm.287173	NM_009516	ENSMUSG00000031016	Wee1	Wee1A	WEE 1 homolog 1 (S. pombe)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34305802-4	chr17	34305692	34305892	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010382)	promoter-TSS (NM_010382)	-75.0	NM_010382	14969.0	Mm.22564	NM_010382	ENSMUSG00000060586	H2-Eb1	Eb|H-2Eb|H2Eb|Ia-4|Ia4	histocompatibility 2, class II antigen E beta	protein-coding	6.10912811737155	6.69586535988613	5.97549758547215	5.8590749839639	6.20479694125277	6.73247825459063	5.92586236847192	5.26421966458709	-0.0775424059797621	0.793212163775894	0.998431161219273
Merged-chr4-53210875-1	chr4	53210775	53210975	+	796.0	f0_balb.idr	Intergenic	Intergenic	-35321.0	NR_040665	78180.0	Mm.243847	NR_040665	ENSMUSG00000086947	4930522O17Rik	-	RIKEN cDNA 4930522O17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-113662914-4	chr6	113662764	113662964	+	821.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 2 of 11)	intron (NM_001113553, intron 2 of 11)	24397.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-117866514-2	chr5	117866414	117866614	+	639.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008712)	promoter-TSS (NM_008712)	-325.0	NM_008712	18125.0	Mm.44249	NM_008712	ENSMUSG00000029361	Nos1	2310005C01Rik|N-NOS|NC-NOS|NO|NOS|NOS-I|Nos-1|bNOS|nNOS	nitric oxide synthase 1, neuronal	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-88466411-2	chr6	88466311	88466511	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019685, intron 1 of 10)	intron (NM_019685, intron 1 of 10)	1002.0	NM_019685	56505.0	Mm.42195	NM_019685	ENSMUSG00000030079	Ruvbl1	2510009G06Rik|Pontin52|Tip49a	RuvB-like protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-37905675-2	chr6	37905575	37905775	+	674.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001272076, intron 2 of 18)	intron (NM_001272076, intron 2 of 18)	5188.0	NM_001272076	21848.0	Mm.41063	NM_145076	ENSMUSG00000029833	Trim24	A130082H20Rik|AI447469|D430004I05Rik|TIF1|TIF1-alpha|TIF1alpha|Tif1a	tripartite motif-containing 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-123423077-4	chr4	123422975	123423175	+	791.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199137, intron 52 of 92)	intron (NM_001199137, intron 52 of 92)	-11164.0	NM_001167918	442834.0	Mm.483803	NM_001167918		D830031N03Rik	Kiaa0754|mKIAA0754	RIKEN cDNA D830031N03 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115342004-2	chr5	115341904	115342104	+	709.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029645)	promoter-TSS (NM_029645)	757.0	NM_026933	69076.0	Mm.27951	NM_026933	ENSMUSG00000029535	Triap1	1810015M01Rik|AU020874|AU043831|P53csv|Wf-1	TP53 regulated inhibitor of apoptosis 1	protein-coding	-0.778082596538266	-1.01822870734921	-1.02945680142399	-1.03348344941628	-0.568232152040811	-1.01579553252409	-1.02691500703827	-1.0331489920742	0.87297571659195	0.788523652777195	1
Merged-chr11-114908239-4	chr11	114908149	114908349	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	18208.0	NM_170758	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-84846813-4	chr12	84846713	84846913	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013589, intron 3 of 34)	intron (NM_013589, intron 3 of 34)	-28989.0	NR_028577	100303738.0	Mm.479389	NR_028577	ENSMUSG00000092130	D030025P21Rik	-	RIKEN cDNA D030025P21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-66075244-4	chr5	66075160	66075360	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139065, intron 2 of 6)	B3|SINE|B2	22919.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78877326-5	chr15	78877238	78877438	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_145929, exon 1 of 17)	5' UTR (NM_145929, exon 1 of 17)	148.0	NM_145929	106039.0	Mm.251331	NM_145929	ENSMUSG00000033128	Gga1	4930406E12Rik|AU016030|AW209092	golgi associated, gamma adaptin ear containing, ARF binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-6647357-4	chr13	6647248	6647448	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019703, intron 1 of 21)	intron (NM_019703, intron 1 of 21)	1423.0	NM_019703	56421.0	Mm.273874	NM_019703	ENSMUSG00000021196	Pfkp	1200015H23Rik|9330125N24Rik|ATP-PFK|PFK-C|PFK-P	phosphofructokinase, platelet	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132514931-4	chr4	132514837	132515037	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4481.0	NM_144907	230784.0	Mm.23608	NM_144907	ENSMUSG00000028893	Sesn2	HI95|SEST2|Ses2	sestrin 2	protein-coding	3.76915883720056	3.01988191601374	3.03592436246188	3.95459836703494	3.18776977563295	2.90492405354463	3.36483823122641	3.57180701197573	-0.381382256923092	0.510498230478574	0.94512318675548
Merged-chr2-24869696-3	chr2	24869605	24869805	+	756.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001012518, intron 4 of 26)	MERVL_2A-int|LTR|ERVL	49904.0	NM_172545	77683.0	Mm.24176	NM_172545	ENSMUSG00000036893	Ehmt1	9230102N17Rik|D330003E03|Eu-HMTase1|GLP|GLP1|KMT1D|mKIAA1876	euchromatic histone methyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-93261309-4	chr10	93261216	93261416	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001282967, intron 2 of 3)	intron (NM_001282967, intron 2 of 3)	49843.0	NM_001322268	13713.0	Mm.4454	NM_013508	ENSMUSG00000008398	Elk3	D430049E23Rik|Erp|Etrp|Net|Sap-2	ELK3, member of ETS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-190927542-2	chr1	190927442	190927642	+	793.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357131)	promoter-TSS (NM_001357131)	-948.0	NM_001357132	52477.0	Mm.289914	NM_021421	ENSMUSG00000026634	Angel2	2610307I21Rik|5730410O10Rik|AI845692|D1Ertd396e|D1Ertd654e	angel homolog 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-31115706-4	chr6	31115596	31115796	+	980.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110471, intron 3 of 3)	intron (NR_110471, intron 3 of 3)	-52603.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-22424863-3	chr17	22424759	22424959	+	729.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001331197, intron 1 of 5)	RLTR9E|LTR|ERVK	657.0	NM_001331198	74149.0	Mm.30767	NM_198003	ENSMUSG00000071266	Zfp946	1300003B13Rik	zinc finger protein 946	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-45961913-4	chr19	45961806	45962006	+	947.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198296, intron 8 of 25)	intron (NM_198296, intron 8 of 25)	-36231.0	NR_152221	100174921.0	Mm.487206	NR_152221		4930505N22Rik	-	RIKEN cDNA 4930505N22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-50702538-4	chr10	50702423	50702623	+	997.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198007, intron 16 of 41)	MTD|LTR|ERVL-MaLR	109854.0	NM_198007	77987.0	Mm.222497	NM_198007	ENSMUSG00000038774	Ascc3	ASC1p200|B630009I04Rik|BC023451|D430001L07Rik|D630041L21|Helic1|RNAH	activating signal cointegrator 1 complex subunit 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-40818910-4	chr19	40818805	40819005	+	909.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12374.0	NM_172839	240665.0	Mm.309	NM_172839	ENSMUSG00000025010	Ccnj	D430039C20Rik	cyclin J	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97241459-4	chr11	97241340	97241540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008942, intron 8 of 22)	intron (NM_008942, intron 8 of 22)	39136.0	NM_008942	19155.0	Mm.29824	NM_008942	ENSMUSG00000001441	Npepps	AAP-S|MP100|Psa|R74825|goku	aminopeptidase puromycin sensitive	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-55158994-4	chr11	55158904	55159104	+	858.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_153170, exon 10 of 10)	3' UTR (NM_153170, exon 10 of 10)	-7298.0	NM_172258	215332.0	Mm.87054	NM_172258	ENSMUSG00000049491	Slc36a3	PAT3|TRAMD2|tramdorin2	solute carrier family 36 (proton/amino acid symporter), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111843670-4	chr12	111843553	111843753	+	803.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011625, exon 7 of 17)	exon (NM_011625, exon 7 of 17)	29483.0	NM_026752	68520.0	Mm.390497	NM_026752	ENSMUSG00000021286	Zfyve21	1110013H04Rik|AW558780|C85416	zinc finger, FYVE domain containing 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-20683170-2	chr18	20683070	20683270	+	758.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-17910.0	NR_155534	102633478.0		NR_155534	ENSMUSG00000085595	Gm16090	-	predicted gene 16090	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-76755759-3	chr14	76755660	76755860	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4371.0	NR_153763	73883.0	Mm.489041	NR_153763		4930431P22Rik	-	RIKEN cDNA 4930431P22 gene	ncRNA	5.81749996573654	5.54131166170989	6.04693099811317	5.99589159604194	2.81069032492924	3.52343866701066	3.25952212475095	2.50330977914017	-3.5354593658161	3.84101826966845e-18	3.63825293680122e-15
Merged-chr10-126025866-1	chr10	126025766	126025966	+	854.0	f1_balb.idr	Intergenic	MTC-int|LTR|ERVL-MaLR	59647.0	NM_177152	320398.0	Mm.275586	NM_177152	ENSMUSG00000020105	Lrig3	9030421L11Rik|9130004I02Rik|9430095K15Rik|mKIAA3016	leucine-rich repeats and immunoglobulin-like domains 3	protein-coding	-0.0269059445048448	-0.147698274700309	0.155129597488947	-0.15524236793433	0.199739954105259	-0.146734202221337	0.395799893217256	-0.154670407831654	1.22744413069766	0.584130248865137	1
Merged-chr11-121260557-3	chr11	121260450	121260650	+	677.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080932, intron 1 of 8)	intron (NM_001080932, intron 1 of 8)	563.0	NM_001080932	68837.0	Mm.209750	NM_001080932	ENSMUSG00000039275	Foxk2	1110054H05Rik|5730434B08Rik|6230415M23Rik|ILF|Ilf1	forkhead box K2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-39455985-2	chr10	39455885	39456085	+	923.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001122893, intron 3 of 13)	intron (NM_001122893, intron 3 of 13)	86186.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-148503606-3	chr5	148503455	148503655	+	782.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48118.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-115850779-2	chr4	115850679	115850879	+	710.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355174, intron 2 of 11)	intron (NM_001355174, intron 2 of 11)	11581.0	NM_001355174	17346.0	Mm.209327	NM_021461	ENSMUSG00000028708	Mknk1	2410048M24Rik|Mnk1	MAP kinase-interacting serine/threonine kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-36672817-2	chr16	36672717	36672917	+	851.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M3c|LINE|L1	-6740.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69126467-5	chr11	69126412	69126612	+	883.2000119999999	f1_balb.idr|f1_c57bl6.idr	exon (NM_011786, exon 1 of 15)	exon (NM_011786, exon 1 of 15)	135.0	NM_011786	23801.0	Mm.41989	NM_011786	ENSMUSG00000020892	Aloxe3	e-LOX-3|eLOX-3	arachidonate lipoxygenase 3	protein-coding	0.585436829140961	1.18528889569497	0.610496828862258	0.795157659195442	1.64152160129984	1.3328564602877	0.61313825136291	1.10260618383225	1.89444601163757	0.225538901467992	0.717692251401288
Merged-chr7-127208979-4	chr7	127208886	127209086	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144522)	promoter-TSS (NM_144522)	87.0	NM_001347655	17907.0	Mm.14526	NM_016754	ENSMUSG00000030672	Mylpf	2410014J02Rik|MLC-2|Mlc2	myosin light chain, phosphorylatable, fast skeletal muscle	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-94683882-4	chr15	94683784	94683984	+	937.3250119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178789, intron 2 of 7)	intron (NM_178789, intron 2 of 7)	54699.0	NM_178789	320709.0	Mm.74873	NM_178789	ENSMUSG00000063296	Tmem117	B930062P21Rik	transmembrane protein 117	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-92975336-3	chr1	92975233	92975433	+	880.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271766)	promoter-TSS (NM_001271766)	-14.0	NM_001271766	64095.0	Mm.152780	NM_022320	ENSMUSG00000026271	Gpr35	KPG_007	G protein-coupled receptor 35	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-75423162-2	chr1	75423062	75423262	+	734.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_007463, exon 30 of 41)	exon (NM_007463, exon 30 of 41)	-12774.0	NM_133708	69080.0	Mm.23951	NM_133708	ENSMUSG00000033021	Gmppa	1810012N01Rik	GDP-mannose pyrophosphorylase A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-47735108-3	chr9	47735013	47735213	+	732.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	83095.0	NR_046048	100038460.0	Mm.447649	NR_046048		Gm10677	-	predicted gene 10677	ncRNA	1.20593588096279	0.637006631603568	0.853007296272611	1.15892944508878	0.591806111619835	0.640420744769819	1.21442476727026	2.11972976702019	1.22284120448466	0.414250806833866	0.896442802092227
Merged-chr8-117109977-2	chr8	117109877	117110077	+	559.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021486, intron 4 of 10)	intron (NM_021486, intron 4 of 10)	14112.0	NM_001163028	63857.0	Mm.174133	NM_021486	ENSMUSG00000031845	Bco1	Bcdo|Bcdo1|Bcmo1|CMO1|Cmoi|beta-CD|betaCMOOX	beta-carotene oxygenase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-88481895-4	chr9	88481767	88481967	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001284328, intron 1 of 11)	CpG	530.0	NM_001311113	56403.0	Mm.260545	NM_019666	ENSMUSG00000032423	Syncrip	2610109K23Rik|4632417O19Rik|GRY-RBP|Nsap1|Nsap1l|hnRNP Q|pp68	synaptotagmin binding, cytoplasmic RNA interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-65442459-3	chr3	65442339	65442539	+	879.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49886.0	NM_026155	67437.0	Mm.232728	NM_026155	ENSMUSG00000027828	Ssr3	0610038P07Rik|AL022999|AU022074|AW553833|TRAPG	signal sequence receptor, gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-11767632-4	chr8	11767529	11767729	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017402, intron 1 of 19)	RMER15|LTR|ERVL	9299.0	NM_001113518	54126.0	Mm.244068	NM_017402	ENSMUSG00000031511	Arhgef7	Cool|PIX|Pak3bp|betaPix|betaPix-b|betaPix-c|cool-1|mKIAA0142|p85Cool1|p85SPR	Rho guanine nucleotide exchange factor (GEF7)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-23955247-1	chr17	23955147	23955347	+	839.0	f1_balb.idr	promoter-TSS (NM_001077421)	promoter-TSS (NM_001077421)	26.0	NM_001077421	638345.0	Mm.46428	NM_001077421	ENSMUSG00000024125	Sbpl	2310068J22Rik	spermine binding protein-like	protein-coding	1.10522407127014	0.478859756806242	0.467760869843356	0.459071085775678	0.773523615817983	0.481337202607377	1.62048966417882	1.09111895376888	1.86385470071557	0.276941463361849	0.781366007374687
Merged-chr1-86441583-4	chr1	86441493	86441693	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	15264.0	NM_027966	71863.0	Mm.179627	NM_027966	ENSMUSG00000036574	Tex44	1700019O17Rik	testis expressed 44	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-7958794-4	chr14	7958697	7958897	+	942.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35385.0	NM_007870	13421.0	Mm.272258	NM_007870	ENSMUSG00000025279	Dnase1l3	DNasegamma|Dhp2|Lsd	deoxyribonuclease 1-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85593200-4	chr12	85593103	85593303	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1K|LTR|ERVL-MaLR	-5902.0	NM_001205052	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-80068945-4	chr9	80068825	80069025	+	841.758301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311110, intron 1 of 23)	intron (NM_001311110, intron 1 of 23)	2022.0	NM_146003	215351.0	Mm.28232	NM_146003	ENSMUSG00000034252	Senp6	2810017C20Rik|E130319N12Rik|Susp1|mKIAA0797	SUMO/sentrin specific peptidase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-125557559-1	chr7	125557459	125557659	+	596.0	f1_c57bl6.idr	intron (NM_001008700, intron 1 of 10)	intron (NM_001008700, intron 1 of 10)	5277.0	NM_001008700	16190.0	Mm.233802	NM_010557	ENSMUSG00000030748	Il4ra	CD124|Il4r	interleukin 4 receptor, alpha	protein-coding	1.88616821779144	1.88630717957917	2.23723087416258	1.10628794323963	1.57386102617678	1.39050562851012	1.95803444373731	1.78000235871846	-0.459013481120959	0.674082463416097	0.99440487726309
Merged-chr5-92503550-4	chr5	92503427	92503627	+	983.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007644, intron 1 of 11)	intron (NM_007644, intron 1 of 11)	2130.0	NM_007644	12492.0	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-37257300-2	chr12	37257203	37257403	+	711.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_178767, intron 3 of 12)	intron (NM_178767, intron 3 of 12)	15664.0	NM_178767	319660.0	Mm.485540	NM_178767	ENSMUSG00000050103	Agmo	A530016O06Rik|AI790538|Tmem195	alkylglycerol monooxygenase	protein-coding	1.87650821307474	2.41286949579885	1.86578510623756	0.798814753756607	0.771525378251109	1.83828559650405	0.822520607685247	0.802095257865684	-2.15359131302442	0.126679554907722	0.55689342891744
Merged-chr6-121215207-4	chr6	121215104	121215304	+	934.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017379, intron 1 of 4)	intron (NM_017379, intron 1 of 4)	4470.0	NM_017379	53857.0	Mm.32884	NM_017379	ENSMUSG00000030137	Tuba8	-	tubulin, alpha 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75628373-2	chr11	75628273	75628473	+	600.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008850, exon 12 of 12)	3' UTR (NM_008850, exon 12 of 12)	-2647.0	NM_008916	19062.0	Mm.1458	NM_008916	ENSMUSG00000006127	Inpp5k	C62|Pps|SKIP	inositol polyphosphate 5-phosphatase K	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-116958192-2	chr13	116958092	116958292	+	970.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081009, intron 3 of 26)	intron (NM_001081009, intron 3 of 26)	67324.0	NM_001081009	52552.0	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128355606-4	chr2	128355506	128355706	+	873.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028590, intron 1 of 2)	intron (NR_028590, intron 1 of 2)	73745.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-73241495-1	chr14	73241395	73241595	+	564.5	f0_balb.idr	intron (NM_009029, intron 17 of 26)	intron (NM_009029, intron 17 of 26)	3604.0	NM_175116	67168.0	Mm.390681	NM_175116	ENSMUSG00000033446	Lpar6	2610302I02Rik|P2ry5|P2y5	lysophosphatidic acid receptor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-64370384-4	chr13	64370311	64370511	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_009984, exon 1 of 8)	5' UTR (NM_009984, exon 1 of 8)	109.0	NM_009984	13039.0	Mm.930	NM_009984	ENSMUSG00000021477	Ctsl	1190035F06Rik|CatL|Ctsl1|MEP|fs|nkt	cathepsin L	protein-coding	5.61038566460769	6.20537283660485	5.79459543807275	5.10295516826778	6.46893574802447	6.44918823494841	6.77625289051302	6.37023525786173	0.87486356720118	0.000477068953747882	0.0107322624507508
Merged-chr5-90773035-2	chr5	90772935	90773135	+	719.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_019932, exon 2 of 3)	exon (NM_019932, exon 2 of 3)	600.0	NM_019932	56744.0	Mm.332490	NM_019932	ENSMUSG00000029373	Pf4	Cxcl4|Scyb4	platelet factor 4	protein-coding	0.0704639292484458	0.60469861941269	-0.0787961254957197	-0.0839844109909081	-0.091379593318595	0.838672553822366	-0.0773195603034731	-0.083075400561777	0.400657952551608	0.857400746731653	1
Merged-chr4-105204385-4	chr4	105204298	105204498	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080555, intron 2 of 5)	MIRc|SINE|MIR	47051.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	4.59991333110108	4.43527103676253	4.67528944022915	4.1808399014518	4.72866787959084	4.15009250298782	3.50446364889655	3.16710461781899	-0.588738637562343	0.208605687197884	0.697820920539093
Merged-chr7-121078609-2	chr7	121078509	121078709	+	624.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-4079.0	NM_030691	80719.0	Mm.160384	NM_030691	ENSMUSG00000035004	Igsf6	-	immunoglobulin superfamily, member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-113748892-2	chr11	113748792	113748992	+	902.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163346, intron 1 of 1)	intron (NM_001163346, intron 1 of 1)	2268.0	NM_020006	56699.0	Mm.293378	NM_020006	ENSMUSG00000041598	Cdc42ep4	1500041M20Rik|Borg4|CEP4	CDC42 effector protein (Rho GTPase binding) 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-116855392-2	chr3	116855301	116855501	+	642.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4166.0	NM_001113478	20321.0	Mm.66293	NM_009146	ENSMUSG00000033386	Frrs1	AI131732|Sdfr2	ferric-chelate reductase 1	protein-coding	1.77308532795218	1.11198487743418	1.92870196477432	1.07359144792842	1.55309705575153	2.23495036569076	1.94458064173806	1.98848814775663	1.23619093228116	0.275744842025863	0.77982362793126
Merged-chr4-136897362-3	chr4	136897288	136897488	+	931.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007572, intron 2 of 2)	MIRc|SINE|MIR	1456.0	NM_007572	12259.0	Mm.439957	NM_007572	ENSMUSG00000036887	C1qa	AI255395|C1q	complement component 1, q subcomponent, alpha polypeptide	protein-coding	2.5702040525668	2.80115799921423	2.2847434711789	1.9388820911416	1.85567125606523	2.90940023004658	2.30302638128387	1.3230680181011	-0.442502252744873	0.631678028851863	0.982228225785984
Merged-chr16-23232948-2	chr16	23232848	23233048	+	776.3000490000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252505, intron 1 of 7)	intron (NM_001252505, intron 1 of 7)	6927.0	NM_001252505	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25238207-10	chr7	25238100	25238300	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001031667)	promoter-TSS (NM_001031667)	-349.0	NM_001031667	606496.0	Mm.491101	NM_001031667	ENSMUSG00000057177	Gsk3a	2700086H06Rik	glycogen synthase kinase 3 alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97701085-2	chr11	97700985	97701185	+	992.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009545)	promoter-TSS (NM_009545)	-588.0	NM_009545	22658.0	Mm.2418	NM_009545	ENSMUSG00000018537	Pcgf2	Mel18|Rnf110|Zfp144|mel-18	polycomb group ring finger 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31410397-4	chr14	31410286	31410486	+	913.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347585, intron 2 of 7)	intron (NM_001347585, intron 2 of 7)	7291.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-123479918-2	chr9	123479818	123480018	+	782.166687	f1_balb.idr|f1_c57bl6.idr	exon (NM_013860, exon 1 of 8)	exon (NM_013860, exon 1 of 8)	1217.0	NM_013860	29806.0	Mm.10987	NM_013860	ENSMUSG00000025239	Limd1	AW822033|D9Ertd192e	LIM domains containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-54227052-4	chr14	54226969	54227169	+	919.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26860.0	NM_001113358	13135.0	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118196876-2	chr11	118196776	118196976	+	718.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	15866.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-17281202-4	chr6	17281101	17281301	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001277756)	promoter-TSS (NM_001277756)	16.0	NM_016900	12390.0	Mm.396075	NM_016900	ENSMUSG00000000058	Cav2	AI447843	caveolin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-31037173-4	chr7	31037065	31037265	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001287217, intron 5 of 8)	MLT1K|LTR|ERVL-MaLR	3152.0	NR_106017	102465635.0		NR_106017	ENSMUSG00000098783	Mir7050	Gm27578|mmu-mir-7050	microRNA 7050	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-46975152-3	chr13	46975044	46975244	+	890.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR12B|LTR|ERVK	39706.0	NM_175340	105193.0	Mm.25593	NM_175340	ENSMUSG00000044231	Nhlrc1	AI505271|B230309E09Rik|EPM2B	NHL repeat containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-97561170-4	chr13	97561069	97561269	+	994.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_046157, intron 1 of 2)	intron (NR_046157, intron 1 of 2)	1169.0	NR_046157	328314.0	Mm.138047	NR_046157	ENSMUSG00000110235	Gm5086	B230311A21|EG328314	predicted gene 5086	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-139369830-1	chr4	139369730	139369930	+	666.0	f1_balb.idr	intron (NM_146157, intron 18 of 23)	intron (NM_146157, intron 18 of 23)	-10829.0	NM_001160319	69116.0	Mm.271956	NM_001160319	ENSMUSG00000066036	Ubr4	1810009A16Rik|A930005E13Rik|D930005K06Rik|Gm1032|Gm1666|N28143|RBAF600|Zubr1|mKIAA0462|p600	ubiquitin protein ligase E3 component n-recognin 4	protein-coding	-0.95883781889115	-0.942168286525863	-0.769210494749691	-0.955001151058993	-0.958267162929849	-0.939470530339747	-0.951799127055168	-0.30083684306821	2.02455425861614	0.511661354010211	1
Merged-chr10-40142322-4	chr10	40142221	40142421	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028247)	promoter-TSS (NM_028247)	-67.0	NM_001114332	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-24595624-1	chr10	24595524	24595724	+	603.0	f0_balb.idr	5' UTR (NM_010217, exon 1 of 5)	5' UTR (NM_010217, exon 1 of 5)	182.0	NM_010217	14219.0	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	0.515846660674018	0.762434257997897	0.861542601759407	0.371803074586625	0.520729408920453	0.597831996400431	1.28489236174589	0.372924902169965	0.615588343899177	0.710264507749248	1
Merged-chr11-35827937-4	chr11	35827797	35827997	+	984.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025936, intron 3 of 14)	intron (NM_025936, intron 3 of 14)	6631.0	NM_025936	104458.0	Mm.284906	NM_025936	ENSMUSG00000018848	Rars	2610011N19Rik|2610037E21Rik|AL033339|AW985894	arginyl-tRNA synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-23020433-4	chr11	23020324	23020524	+	777.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_028672, exon 3 of 4)	exon (NM_028672, exon 3 of 4)	7037.0	NM_028672	73873.0	Mm.252406	NM_028672	ENSMUSG00000049811	Fam161a	4930430E16Rik	family with sequence similarity 161, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-34283656-2	chr10	34283556	34283756	+	671.25	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009433, exon 1 of 1)	3' UTR (NM_009433, exon 1 of 1)	1466.0	NM_009433	22110.0	Mm.20445	NM_009433	ENSMUSG00000047514	Tspyl1	Tspyl	testis-specific protein, Y-encoded-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-54950682-4	chr9	54950550	54950750	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011966)	promoter-TSS (NM_011966)	-209.0	NM_011966	26441.0	Mm.30270	NM_011966	ENSMUSG00000032301	Psma4	C9	proteasome (prosome, macropain) subunit, alpha type 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-30206378-2	chr17	30206278	30206478	+	955.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356265, intron 5 of 5)	intron (NM_001356265, intron 5 of 5)	189802.0	NR_030688	623169.0	Mm.440508	NR_030688		Gm6402	EG623169	ribosomal protein S17 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78246844-4	chr15	78246727	78246927	+	830.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008677, intron 1 of 9)	intron (NM_008677, intron 1 of 9)	2016.0	NM_008677	17972.0	Mm.2068	NM_008677	ENSMUSG00000071715	Ncf4	AI451400|p40phox	neutrophil cytosolic factor 4	protein-coding	3.84185834268502	2.25292254721237	3.32442893158017	2.73588326621037	3.64790214982174	2.80411683418702	3.43028110912206	2.75056450689997	0.0515679706407411	0.939187381949681	0.998431161219273
Merged-chr15-89341510-2	chr15	89341410	89341610	+	618.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	7037.0	NM_019977	56727.0	Mm.158200	NM_019977	ENSMUSG00000022613	Miox	0610009I10Rik|AI314022|Aldrl6|C85427|RSOR	myo-inositol oxygenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27202164-2	chr17	27202064	27202264	+	891.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146075, intron 1 of 8)	B3|SINE|B2	2274.0	NM_146075	224640.0	Mm.29689	NM_146075	ENSMUSG00000044857	Lemd2	BC026588|Lem2|NET25	LEM domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-7456415-2	chr4	7456315	7456515	+	576.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-104273.0	NR_040645	71510.0	Mm.410775	NR_040645	ENSMUSG00000086070	8430436N08Rik	-	RIKEN cDNA 8430436N08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-106767182-1	chr14	106767082	106767282	+	541.0	f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-280662.0	NR_045938	73631.0	Mm.48862	NR_045938	ENSMUSG00000099794	1700128A07Rik	-	RIKEN cDNA 1700128A07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171068083-1	chr1	171067983	171068183	+	746.0	f1_c57bl6.idr	Intergenic	Intergenic	-3431.0	NR_106103	102466998.0		NR_106103	ENSMUSG00000099119	Mir6546	Gm27408|mmu-mir-6546	microRNA 6546	ncRNA	0.0592560714829746	0.0788735538335019	0.0724757939199945	0.513686857324888	0.892107565727359	0.602982975861431	0.0738892062143841	0.0683876184254926	1.82813327019228	0.402514152084281	1
Merged-chr4-130801449-4	chr4	130801351	130801551	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011520, intron 1 of 4)	intron (NM_011520, intron 1 of 4)	8914.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-105788110-2	chr1	105788010	105788210	+	702.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009399, intron 1 of 9)	intron (NM_009399, intron 1 of 9)	7387.0	NM_009399	21934.0	Mm.6251	NM_009399	ENSMUSG00000026321	Tnfrsf11a	Ly109|ODFR|OFE|Rank|TRANCE-R|mRANK	tumor necrosis factor receptor superfamily, member 11a, NFKB activator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-138088652-2	chr1	138088552	138088752	+	606.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001268286, intron 15 of 28)	intron (NM_001268286, intron 15 of 28)	86474.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-45000988-4	chr10	45000797	45000997	+	923.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66317.0	NM_011156	19072.0	Mm.10281	NM_011156	ENSMUSG00000019849	Prep	AI047692|AI450383|D10Wsu136e|PEP|Pop	prolyl endopeptidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-121907455-4	chr14	121907368	121907568	+	942.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026861, intron 3 of 8)	intron (NM_026861, intron 3 of 8)	8306.0	NM_182806	110168.0	Mm.37405	NM_182806	ENSMUSG00000050350	Gpr18	-	G protein-coupled receptor 18	protein-coding	-0.241940458332395	-0.223366572342787	0.402124356756317	-0.234086863093923	-0.240766495281165	-0.222013821105667	0.716357396783593	-0.233265532182976	0.853987973957931	0.731320156133671	1
Merged-chr14-20795874-2	chr14	20795774	20795974	+	722.166626	f1_balb.idr|f1_c57bl6.idr	intron (NR_153779, intron 1 of 1)	intron (NR_153779, intron 1 of 1)	1635.0	NR_153779	102631887.0	Mm.122292	NR_153779	ENSMUSG00000114241	Gm30108	-	predicted gene, 30108	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-128655098-3	chr4	128654996	128655196	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195130, intron 1 of 14)	CpG	394.0	NM_001195130	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-63894899-2	chr17	63894799	63894999	+	982.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286415, intron 1 of 17)	BGLII|LTR|ERVK	16833.0	NM_001286415	14158.0	Mm.23039	NM_008000	ENSMUSG00000000127	Fer	AV082135|C330004K01Rik|Fert|Fert2	fer (fms/fps related) protein kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-105684151-4	chr5	105684041	105684241	+	955.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-15828.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91717160-4	chr16	91717044	91717244	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026994, intron 2 of 11)	MTE2a|LTR|ERVL-MaLR	11658.0	NM_026994	66609.0	Mm.109823	NM_026994	ENSMUSG00000058240	Cryzl1	2210407J23Rik|2410006O11Rik|QOH-1	crystallin, zeta (quinone reductase)-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-21272410-5	chr17	21272308	21272508	+	708.900024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11981.0	NM_134199	171233.0	Mm.222636	NM_134199	ENSMUSG00000050102	Vmn1r235	V1rf2	vomeronasal 1 receptor 235	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-13380253-3	chr15	13380179	13380379	+	891.099976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-206604.0	NM_007666	12563.0	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-180925373-4	chr2	180925290	180925490	+	859.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3633.0	NM_001163247	329581.0	Mm.187879	NM_001163247	ENSMUSG00000038840	Birc7	E130019N06|KIAP|Livin|ML-IAP	baculoviral IAP repeat-containing 7 (livin)	protein-coding	1.84762827733831	1.38932303690467	2.79778132186476	1.77422298357523	2.67339995409511	2.83014736716219	2.54282158456249	2.23832720648409	1.12905252506942	0.209956638098099	0.69949048545273
Merged-chr17-34098672-2	chr17	34098572	34098772	+	635.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-3363.0	NR_046183	414076.0	Mm.473092	NR_046183	ENSMUSG00000098197	BC051537	-	cDNA sequence BC051537	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19503683-4	chr7	19503580	19503780	+	942.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4651.0	NM_177692	232946.0	Mm.64557	NM_177692	ENSMUSG00000057667	Bloc1s3	BC043666|Blos3|E230011O18|rp	biogenesis of lysosomal organelles complex-1, subunit 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-45084691-3	chr9	45084599	45084799	+	863.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005421, intron 3 of 10)	intron (NM_001005421, intron 3 of 10)	5516.0	NM_001005421	270152.0	Mm.190461	NM_001005421	ENSMUSG00000048534	Jaml	AMICA|Amica1|Crea7|Gm638	junction adhesion molecule like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-75748419-4	chr15	75748320	75748520	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_194350)	promoter-TSS (NM_194350)	-498.0	NM_194350	378435.0	Mm.309589	NM_194350	ENSMUSG00000047591	Mafa	RIPE3b1	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein A (avian)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47440788-1	chr17	47440688	47440888	+	849.0	f1_balb.idr	intron (NM_145489, intron 1 of 4)	intron (NM_145489, intron 1 of 4)	-3413.0	NM_029296	75462.0	Mm.46129	NM_029296	ENSMUSG00000047150	1700001C19Rik	-	RIKEN cDNA 1700001C19 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-137863591-2	chr5	137863489	137863689	+	553.0	f0_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5540.0	NM_133209	170741.0	Mm.347593	NM_133209	ENSMUSG00000066684	Pilrb1	FDFACT|Fdact|Pilrb	paired immunoglobin-like type 2 receptor beta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-173378127-2	chr2	173378027	173378227	+	845.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-101594.0	NM_022995	65112.0	Mm.73682	NM_022995	ENSMUSG00000038400	Pmepa1	2210418I02Rik|AW455466|Erg1.2|N4wbp4|Stag1|Tmepai	prostate transmembrane protein, androgen induced 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27270874-2	chr2	27270774	27270974	+	604.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_133905, intron 24 of 29)	intron (NR_133905, intron 24 of 29)	-23571.0	NM_138665	192166.0	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122106302-2	chr5	122106202	122106402	+	674.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010861, intron 6 of 6)	intron (NM_010861, intron 6 of 6)	5351.0	NM_010861	17906.0	Mm.1529	NM_010861	ENSMUSG00000013936	Myl2	MLC-2|MLC-2s/v|MLC-2v|Mlc2v|Mylpc	myosin, light polypeptide 2, regulatory, cardiac, slow	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115471330-1	chr5	115471230	115471430	+	861.0	f1_c57bl6.idr	intron (NM_001356586, intron 2 of 3)	intron (NM_001356586, intron 2 of 3)	5188.0	NM_001356587	18778.0	Mm.20190	NM_011107	ENSMUSG00000029522	Pla2g1b	Pla2a|sPLA2IB	phospholipase A2, group IB, pancreas	protein-coding	0.690312441095878	0.821625209080371	1.70145513822986	0.367576336284213	0.354390055474941	0.390952140885922	0.379308579604457	1.02920436747102	-1.97836238212316	0.258885403530476	0.75927260363863
Merged-chr18-25486582-2	chr18	25486482	25486682	+	788.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_155531, intron 12 of 13)	intron (NR_155531, intron 12 of 13)	193166.0	NM_001362337	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-6863719-3	chr6	6863615	6863815	+	629.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_002839)	TTS (NR_002839)	381.0	NM_010057	13396.0	Mm.439763	NM_010057	ENSMUSG00000029754	Dlx6	-	distal-less homeobox 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-30374493-4	chr16	30374398	30374598	+	818.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001128096, intron 2 of 33)	intron (NM_001128096, intron 2 of 33)	14032.0	NM_001128094	224088.0	Mm.8924	NM_001128094	ENSMUSG00000022533	Atp13a3	AU022875|Gm1745|Gm541|Gm542	ATPase type 13A3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-112395157-4	chr13	112395050	112395250	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68920.0	NM_010560	16195.0	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-108301813-2	chr9	108301713	108301913	+	824.75	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001013814)	TTS (NM_001013814)	4346.0	NM_133986	102791.0	Mm.24670	NM_133986	ENSMUSG00000039461	Tcta	9130410M22Rik|AW553637|C85065|Tctal	T cell leukemia translocation altered gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-44772739-4	chr16	44772625	44772825	+	801.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021325, intron 1 of 6)	intron (NM_021325, intron 1 of 6)	6989.0	NM_021325	57781.0	Mm.416152	NM_021325	ENSMUSG00000022667	Cd200r1	CD200R|Mox2r|OX2R	CD200 receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-49326876-2	chr13	49326776	49326976	+	645.383301	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14673.0	NM_001039179	76895.0	Mm.197387	NM_029791	ENSMUSG00000037933	Bicd2	-	BICD cargo adaptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-142758727-2	chr6	142758627	142758827	+	883.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009908, intron 1 of 7)	intron (NM_009908, intron 1 of 7)	2041.0	NM_009908	12764.0	Mm.3820	NM_009908	ENSMUSG00000030282	Cmas	AW208911|CMPNeu5Ac|D6Bwg0250e	cytidine monophospho-N-acetylneuraminic acid synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80666787-3	chr10	80666693	80666893	+	639.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_021462, exon 14 of 14)	3' UTR (NM_021462, exon 14 of 14)	9500.0	NM_021462	17347.0	Mm.42126	NM_021462	ENSMUSG00000020190	Mknk2	2010016G11Rik|Gprk7|Mnk2	MAP kinase-interacting serine/threonine kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-39425177-2	chr1	39425077	39425277	+	564.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_018775, intron 2 of 19)	intron (NM_018775, intron 2 of 19)	53570.0	NM_018775	54610.0	Mm.387293	NM_018775	ENSMUSG00000003134	Tbc1d8	AD3|HBLP1|VRP	TBC1 domain family, member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-134690464-4	chr5	134690373	134690573	+	985.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-1883.0	NM_010717	16885.0	Mm.15409	NM_010717	ENSMUSG00000029674	Limk1	KIZ-1|LIMK-1|Limk	LIM-domain containing, protein kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-37292076-1	chr11	37291976	37292176	+	543.0	f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	-347835.0	NM_011856	23964.0	Mm.439889	NM_011856	ENSMUSG00000049336	Tenm2	Odz2|Odz3|Ten-2|Ten-m2	teneurin transmembrane protein 2	protein-coding	-1.70135544069701	-1.81276568865923	-1.82173030446212	-1.8290941067965	-1.84032881314662	-1.81082301901796	-1.81970091194313	-1.68672165733678	0.0376840119903866	0.991491645451152	1
Merged-chr12-110695047-2	chr12	110694947	110695147	+	696.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010480, intron 3 of 10)	intron (NM_010480, intron 3 of 10)	1348.0	NM_010480	15519.0	Mm.1843	NM_010480	ENSMUSG00000021270	Hsp90aa1	86kDa|89kDa|AL024080|AL024147|Hsp86-1|Hsp89|Hsp90|Hspca|hsp4	heat shock protein 90, alpha (cytosolic), class A member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97205717-4	chr6	97205610	97205810	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001301857)	promoter-TSS (NM_001301857)	-63.0	NM_001301859	22200.0	Mm.277626	NM_011666	ENSMUSG00000030061	Uba3	A830034N06Rik|AI256736|AI848246|AW546539|Ube1c	ubiquitin-like modifier activating enzyme 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-70756438-1	chr17	70756338	70756538	+	548.0	f1_balb.idr	intron (NM_001347411, intron 9 of 14)	B3|SINE|B2	90339.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-93599948-4	chr2	93599851	93600051	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42483.0	NM_007442	11695.0	Mm.389389	NM_007442	ENSMUSG00000040310	Alx4	lst	aristaless-like homeobox 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-135768387-3	chr7	135768295	135768495	+	865.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52016.0	NM_001081117	17345.0	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106271643-2	chr11	106271543	106271743	+	784.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001130187, intron 1 of 12)	intron (NM_001130187, intron 1 of 12)	1329.0	NM_001130187	83796.0	Mm.21772	NM_031878	ENSMUSG00000078619	Smarcd2	AW322457|Baf60b	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-70851211-4	chr17	70851130	70851330	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009372)	promoter-TSS (NM_009372)	-20.0	NM_009372	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-78043555-4	chr10	78043448	78043648	+	674.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271549)	promoter-TSS (NM_001271549)	62.0	NM_001271552	11634.0	Mm.35300	NM_009646	ENSMUSG00000000731	Aire	-	autoimmune regulator (autoimmune polyendocrinopathy candidiasis ectodermal dystrophy)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-96896929-1	chr5	96896829	96897029	+	563.0	f1_balb.idr	Intergenic	Intergenic	-24343.0	NR_131152	666266.0	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-40894699-4	chr19	40894583	40894783	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028319)	promoter-TSS (NM_028319)	-20.0	NR_106167	102466881.0		NR_106167	ENSMUSG00000099118	Mir8092	Gm27407|mmu-mir-8092	microRNA 8092	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-37215770-4	chr8	37215674	37215874	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-191536.0	NR_126063	414128.0	Mm.450976	NR_126063	ENSMUSG00000110242	G630064G18Rik	-	RIKEN cDNA G630064G18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-100039953-4	chr5	100039868	100040068	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026421)	promoter-TSS (NM_026421)	-26.0	NM_026421	67870.0	Mm.11311	NM_026421	ENSMUSG00000029326	Enoph1	2310057D15Rik|BB183658|C81437	enolase-phosphatase 1	protein-coding	5.72825431151223	5.98842107567998	4.86682701716219	5.25159942193288	5.86960571678174	5.97835011222031	5.03095684897107	5.27520699891404	0.0806076273580822	0.803943831858424	0.998431161219273
Merged-chr14-26531981-4	chr14	26531874	26532074	+	870.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310445, intron 1 of 22)	intron (NM_001310445, intron 1 of 22)	2650.0	NM_032008	83997.0	Mm.36769	NM_032008	ENSMUSG00000021870	Slmap	D330001L02Rik|Miranda|Slap|mKIAA1601	sarcolemma associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-11146853-2	chr4	11146753	11146953	+	744.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9588.0	NM_001199105	60599.0	Mm.393018	NM_021897	ENSMUSG00000028211	Trp53inp1	2700057G22Rik|SIP|SIP18|SIP27|Stinp|Teap|p53DINP1	transformation related protein 53 inducible nuclear protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128743153-10	chr2	128743017	128743217	+	927.81665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 4 of 18)	B3|SINE|B2	44202.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-78134594-4	chr10	78134490	78134690	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35178.0	NM_138601	28295.0	Mm.268691	NM_138601	ENSMUSG00000053329	D10Jhu81e	C21orf33|ES1	DNA segment, Chr 10, Johns Hopkins University 81 expressed	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16613809-2	chr7	16613709	16613909	+	660.833374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_136928)	promoter-TSS (NR_136928)	-15.0	NR_136928	102634559.0	Mm.421602	NR_136928	ENSMUSG00000100583	Gm29443	-	predicted gene 29443	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-5052584-4	chr6	5052471	5052671	+	916.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181595, intron 3 of 15)	ORR1F|LTR|ERVL-MaLR	141375.0	NM_011134	18979.0	Mm.237657	NM_011134	ENSMUSG00000002588	Pon1	Pon	paraoxonase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-160578919-2	chr2	160578819	160579019	+	967.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66978.0	NM_009408	21969.0	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-83650284-2	chr7	83650184	83650384	+	710.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360088, intron 15 of 18)	intron (NM_001360088, intron 15 of 18)	5211.0	NM_001360089	16170.0	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91092717-2	chr2	91092617	91092817	+	721.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-3961.0	NM_011355	20375.0	Mm.1302	NM_011355	ENSMUSG00000002111	Spi1	Dis-1|Dis1|PU.1|Sfpi-1|Sfpi1|Spi-1|Tcfpu1|Tfpu.1	spleen focus forming virus (SFFV) proviral integration oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-68729586-2	chr10	68729486	68729686	+	826.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177794, intron 1 of 5)	ORR1D2|LTR|ERVL-MaLR	5840.0	NM_177794	327766.0	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-152010457-4	chr4	152010364	152010564	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033352, intron 1 of 3)	intron (NM_001033352, intron 1 of 3)	1573.0	NM_001033352	242785.0	Mm.22306	NM_001033352	ENSMUSG00000073700	Klhl21	1810045K06Rik|D330008A20|mKIAA0469	kelch-like 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-89123163-4	chr15	89123064	89123264	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163319)	promoter-TSS (NM_001163319)	-14.0	NM_001163319	328580.0	Mm.380934	NM_001163319	ENSMUSG00000051786	Tubgcp6	AI843275|D430023H11|GCP-6|mKIAA1669	tubulin, gamma complex associated protein 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34640498-2	chr17	34640398	34640598	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-4385.0	NM_019873	56299.0	Mm.10025	NM_019873	ENSMUSG00000033739	Fkbpl	DIR1|NG7|Ppiase-X|Wisp39	FK506 binding protein-like	protein-coding	0.216853717107643	-0.148809212313188	-0.153873119895821	0.151182771592289	-0.163315459989002	-0.147668403981939	0.63052706842695	-0.157100224574797	0.567534293948032	0.808078540422726	1
Merged-chr4-118090024-2	chr4	118089924	118090124	+	638.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285520, intron 2 of 11)	intron (NM_001285520, intron 2 of 11)	44922.0	NM_001285520	20441.0	Mm.251002	NM_009176	ENSMUSG00000028538	St3gal3	ST3GalIII|ST3N|Siat3|Siat6	ST3 beta-galactoside alpha-2,3-sialyltransferase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-116505514-4	chr10	116505416	116505616	+	947.2708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359253, intron 2 of 11)	intron (NM_001359253, intron 2 of 11)	22433.0	NM_001359253	72068.0	Mm.351553	NM_028082	ENSMUSG00000020166	Cnot2	2600016M12Rik|2810470K03Rik|AA537049|AA959607|AW557563|C79650	CCR4-NOT transcription complex, subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99086037-2	chr7	99085937	99086137	+	648.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 5 of 14)	intron (NM_178635, intron 5 of 14)	55107.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-90492139-2	chr6	90492039	90492239	+	603.958374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29563.0	NM_023184	66277.0	Mm.38343	NM_023184	ENSMUSG00000030087	Klf15	1810013I09Rik|AV048136|AW494632|CKLF|KKLF	Kruppel-like factor 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-88442062-4	chr17	88441952	88442152	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355742, intron 1 of 5)	intron (NM_001355742, intron 1 of 5)	1348.0	NM_001355742	14236.0	Mm.112824	NM_180974	ENSMUSG00000034998	Foxn2	3230402J05Rik|6030465J18Rik|Fkh19|Foxn1|HTLF	forkhead box N2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-73279129-1	chr2	73279029	73279229	+	559.0	f0_balb.idr	Intergenic	Intergenic	7203.0	NM_001005343	381373.0	Mm.330293	NM_001005343	ENSMUSG00000068859	Sp9	-	trans-acting transcription factor 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-25656257-2	chr9	25656157	25656357	+	656.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	174660.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-138998251-6	chr5	138998166	138998366	+	905.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3313.0	NM_008808	18590.0	Mm.2675	NM_008808	ENSMUSG00000025856	Pdgfa	-	platelet derived growth factor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69583972-2	chr11	69583872	69584072	+	686.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001127233, intron 1 of 10)	intron (NM_001127233, intron 1 of 10)	3613.0	NM_001127233	22059.0	Mm.222	NM_011640	ENSMUSG00000059552	Trp53	Tp53|bbl|bfy|bhy|p44|p53	transformation related protein 53	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-97181433-2	chr15	97181333	97181533	+	578.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14189.0	NR_155279	102635594.0	Mm.392594	NR_155278	ENSMUSG00000116295	Gm32885	-	predicted gene, 32885	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-43993570-4	chr19	43993460	43993660	+	794.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7040.0	NM_030703	93721.0	Mm.206774	NM_030703	ENSMUSG00000025196	Cpn1	0610011F20Rik|CPN	carboxypeptidase N, polypeptide 1	protein-coding	-0.187272264748169	0.412325699523544	-0.32429073355572	0.105446966691284	-0.332732923023748	-0.318740461336877	-0.323291414785184	-0.327176643672084	-3.680579968822	0.124051728212489	1
Merged-chr1-148903315-4	chr1	148903219	148903419	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	1019120.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-84868231-4	chr3	84868131	84868331	+	750.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177773, intron 3 of 13)	intron (NM_001177773, intron 3 of 13)	4086.0	NM_001177774	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	1.30536614806113	1.25769791076057	1.94548489230579	1.52611953700931	1.14980534544933	2.23461079745008	0.996323306297944	2.08086336981016	0.608645729740045	0.607637002131579	0.974576632476413
Merged-chr3-121817626-2	chr3	121817526	121817726	+	710.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-2324.0	NM_008991	19299.0	Mm.399042	NM_008991	ENSMUSG00000028127	Abcd3	AI313901|AU018866|AW146054|PMP68|PMP70|Pxmp1	ATP-binding cassette, sub-family D (ALD), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-64327636-4	chr14	64327474	64327674	+	970.4285890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253715, intron 1 of 4)	MLT1F1|LTR|ERVL-MaLR	89382.0	NM_001253716	110265.0	Mm.26713	NM_026322	ENSMUSG00000054733	Msra	2310045J23Rik|6530413P12Rik|MSR-A	methionine sulfoxide reductase A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-96480561-2	chr7	96480461	96480661	+	790.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011858, intron 3 of 32)	intron (NM_011858, intron 3 of 32)	-138597.0	NR_046043	670727.0	Mm.421352	NR_046043	ENSMUSG00000085751	Gm15412	-	predicted gene 15412	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-105198901-2	chr9	105198789	105198989	+	938.625	f0_balb.idr|f1_balb.idr	intron (NM_172461, intron 15 of 15)	intron (NM_172461, intron 15 of 15)	-53807.0	NM_028562	73532.0	Mm.23516	NM_028562	ENSMUSG00000032566	1700080E11Rik	AI429110|Tseg8	RIKEN cDNA 1700080E11 gene	protein-coding	1.14816020894932	1.0058754781209	0.972304820902125	0.945069797494403	2.78004498455285	2.35035612843719	2.91357246667649	1.79905328308471	5.15472342897292	8.24553847139055e-05	0.00265465037333839
Merged-chr5-124026585-4	chr5	124026484	124026684	+	985.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177876, intron 1 of 3)	intron (NM_177876, intron 1 of 3)	5676.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-70838014-2	chr9	70837914	70838114	+	830.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001324473, intron 1 of 8)	intron (NM_001324473, intron 1 of 8)	96794.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78881949-2	chr15	78881849	78882049	+	993.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145929, intron 2 of 16)	intron (NM_145929, intron 2 of 16)	4759.0	NM_145929	106039.0	Mm.251331	NM_145929	ENSMUSG00000033128	Gga1	4930406E12Rik|AU016030|AW209092	golgi associated, gamma adaptin ear containing, ARF binding protein 1	protein-coding	-1.26554800049512	-1.51217308395808	-1.52155193835069	-1.52925600859628	-1.54100985029104	-1.51014064708637	-1.51942877129484	-1.38030478722079	-0.563662181339258	0.873093626595385	1
Merged-chr12-57211821-3	chr12	57211700	57211900	+	953.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14328.0	NM_172577	217593.0	Mm.32835	NM_172577	ENSMUSG00000035472	Slc25a21	9930033G19Rik|A630030I10|BB158148	solute carrier family 25 (mitochondrial oxodicarboxylate carrier), member 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-103028652-1	chr10	103028552	103028752	+	582.0	f0_balb.idr	5' UTR (NM_172553, exon 1 of 4)	5' UTR (NM_172553, exon 1 of 4)	125.0	NM_172553	216285.0	Mm.19287	NM_172553	ENSMUSG00000036602	Alx1	AI314867|C130005I02|Cart1	ALX homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-58015413-4	chr15	58015323	58015523	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18871.0	NM_029418	75758.0	Mm.455792	NM_029418	ENSMUSG00000101892	9130401M01Rik	AI849328	RIKEN cDNA 9130401M01 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-59555674-2	chr14	59555574	59555774	+	730.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42285.0	NM_001168537	71891.0	Mm.439850	NM_027986	ENSMUSG00000021982	Cdadc1	2310010M10Rik|AI449174|AI463398|BB130816|NYD-SP15	cytidine and dCMP deaminase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-96544252-4	chr9	96544148	96544348	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053268, intron 23 of 23)	intron (NM_053268, intron 23 of 23)	-65573.0	NM_001311135	19823.0	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-79591405-4	chr3	79591341	79591541	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_026352, exon 1 of 10)	5' UTR (NM_026352, exon 1 of 10)	104.0	NM_026352	67738.0	Mm.295252	NM_026352	ENSMUSG00000027804	Ppid	4930564J03Rik|CYP-40|Ppidl|Ppif	peptidylprolyl isomerase D (cyclophilin D)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-98912805-4	chr13	98912734	98912934	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178716, intron 1 of 23)	intron (NM_178716, intron 1 of 23)	13550.0	NM_178716	238799.0	Mm.173286	NM_178716	ENSMUSG00000009470	Tnpo1	AU021749|D13Ertd688e|IPO2|Kpnb2|MIP|MIP1|TRN	transportin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-80953113-4	chr13	80953048	80953248	+	679.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10926.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-5256239-4	chr6	5256115	5256315	+	968.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173006)	promoter-TSS (NM_173006)	18.0	NM_173006	269823.0	Mm.9122	NM_173006	ENSMUSG00000029759	Pon3	2810004E20|AI786302	paraoxonase 3	protein-coding	1.69672536127942	1.14392870443883	1.96357124452936	2.10896494217122	1.7106982800481	1.39835396702366	1.55207916314784	2.43714099344842	0.199007545448427	0.855042752243198	0.998431161219273
Merged-chr11-32538951-4	chr11	32538859	32539059	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 1 of 18)	intron (NM_009288, intron 1 of 18)	5693.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	2.31872771975371	2.47624913306647	2.51462794204994	2.82065405153772	3.18888211303561	1.49907032481851	2.27402062662072	2.45640362429067	-0.0585179650150213	0.945083165444102	0.998431161219273
Merged-chr2-26021739-4	chr2	26021656	26021856	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133835)	promoter-TSS (NM_133835)	4.0	NM_133835	98766.0	Mm.247824	NM_133835	ENSMUSG00000036352	Ubac1	1110033G07Rik|AA407978|GBDR1|Gdbr1|Kpc2|Ubadc1	ubiquitin associated domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-52957911-3	chr6	52957806	52958006	+	745.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173406, intron 1 of 4)	LTR41B|LTR|ERVL	-48286.0	NM_001168277	231986.0	Mm.386865	NM_173406	ENSMUSG00000063568	Jazf1	AI591476|C820002C15|Jaz1|Tip27	JAZF zinc finger 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-98803881-4	chr13	98803760	98803960	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172591, intron 2 of 25)	intron (NM_172591, intron 2 of 25)	11589.0	NM_172591	218503.0	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-31259096-4	chr2	31258958	31259158	+	951.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019681, intron 1 of 7)	intron (NM_019681, intron 1 of 7)	13135.0	NM_019681	14299.0	Mm.249318	NM_019681	ENSMUSG00000062661	Ncs1	9430075O15Rik|A730032G13Rik|AI836659|Freq|Mfreq|NCS-1	neuronal calcium sensor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-82046800-2	chr15	82046702	82046902	+	733.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_011482, intron 1 of 2)	intron (NM_011482, intron 1 of 2)	796.0	NM_011482	20826.0	Mm.299312	NM_011482	ENSMUSG00000063480	Snu13	FA-1|Fta1|Nhp2l1|Ssfa1	SNU13 homolog, small nuclear ribonucleoprotein (U4/U6.U5)	protein-coding	2.11559236020997	1.17736671097894	1.73645967922146	1.82329017573463	2.35170279541269	1.18244876513366	1.89110645241399	2.15703257600029	0.585932671064095	0.595972003268674	0.971416365479727
Merged-chr4-146498526-2	chr4	146498426	146498626	+	741.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR12BD_Mm|LTR|ERVK	-3474.0	NM_001243138	100041433.0	Mm.441741	NM_001243138	ENSMUSG00000056300	Zfp981	Gm13247	zinc finger protein 981	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-61707345-1	chr17	61707245	61707445	+	651.0	f1_c57bl6.idr	Intergenic	Lx3A|LINE|L1	1173972.0	NM_207654	13640.0	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-78724642-4	chr1	78724567	78724767	+	917.341675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	66227.0	NM_001136226	195434.0	Mm.276016	NM_001001981	ENSMUSG00000079470	Utp14b	4932411L21Rik|jsd	UTP14B small subunit processome component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122909115-1	chr8	122909015	122909215	+	543.0	f1_balb.idr	intron (NM_001081379, intron 3 of 12)	intron (NM_001081379, intron 3 of 12)	60741.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-51606080-4	chr11	51605973	51606173	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001048061, intron 2 of 7)	CpG	808.0	NM_001048061	15384.0	Mm.256875	NM_010448	ENSMUSG00000020358	Hnrnpab	3010025C11Rik|CBF-A|Cgbfa|Hnrpab	heterogeneous nuclear ribonucleoprotein A/B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28370527-2	chr7	28370427	28370627	+	934.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_138752, intron 2 of 18)	intron (NM_138752, intron 2 of 18)	2135.0	NM_138752	101497.0	Mm.235700	NM_138752	ENSMUSG00000037552	Plekhg2	AI194308|Clg|Cslg	pleckstrin homology domain containing, family G (with RhoGef domain) member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-65107078-2	chr14	65106978	65107178	+	549.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-8972.0	NM_001360385	54616.0	Mm.103748	NM_018788	ENSMUSG00000021978	Extl3	2900009G18Rik|AU040105|Ext1l|mKIAA0519	exostoses (multiple)-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-61040586-2	chr9	61040486	61040686	+	600.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23517.0	NR_040767	330956.0	Mm.207985	NR_040767	ENSMUSG00000111290	Gm5122	A430102L10	predicted gene 5122	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-31649880-3	chr15	31649799	31649999	+	644.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	47783.0	NM_001356313	68073.0	Mm.119185	NM_026546	ENSMUSG00000039065	Fam173b	A930016P21Rik|AA987072	family with sequence similarity 173, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-102001118-4	chr5	102001012	102001212	+	980.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 3 of 66)	intron (NM_172882, intron 3 of 66)	68809.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	3.97524897916412	3.76508816888918	3.06835079643957	3.86686015692577	4.0495579715073	1.83002655649002	3.09415069019209	4.27928033116609	-0.132466675571733	0.839129409018598	0.998431161219273
Merged-chr17-87280716-2	chr17	87280616	87280816	+	851.666626	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_015506, exon 2 of 5)	non-coding (NR_015506, exon 2 of 5)	2098.0	NR_015506	74597.0	Mm.63783	NR_015506	ENSMUSG00000085287	4833418N02Rik	-	RIKEN cDNA 4833418N02 gene	ncRNA	1.34066654282115	0.720937406533877	1.83937342748308	1.19727951204117	1.13836066414855	0.723854330125825	1.24904525360435	0.699407471377196	-1.49787170486288	0.307911477455771	0.808952350279644
Merged-chr8-115707415-4	chr8	115707310	115707510	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001025577)	promoter-TSS (NM_001025577)	-516.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	3.65257772925016	3.7019197773678	2.70433075393469	2.75488261898684	3.63022310324001	3.49419003091182	3.46092137401692	1.90010344088219	-0.0196783179833216	0.976972716623391	0.998431161219273
Merged-chr2-25626146-3	chr2	25626054	25626254	+	641.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007995, intron 6 of 9)	intron (NM_007995, intron 6 of 9)	1820.0	NM_007995	14133.0	Mm.10510	NM_007995	ENSMUSG00000026938	Fcna	Fcn1	ficolin A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-30627574-4	chr14	30627460	30627660	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1352.0	NM_011103	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	4.44954191237297	3.19397545196137	4.81475005354441	3.32433923230407	4.70966185780821	3.47182739324949	4.43376940858781	3.53310105034919	0.0303134863973461	0.955611074007557	0.998431161219273
Merged-chr8-107324321-3	chr8	107324222	107324422	+	909.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018823, intron 2 of 14)	intron (NM_018823, intron 2 of 14)	30852.0	NM_133957	54446.0	Mm.390057	NM_018823	ENSMUSG00000003847	Nfat5	AI225870|B130038B15Rik|CAG-8|CAG80|NFATL1|OREBP|TonEBP|mKIAA0827|nfatz	nuclear factor of activated T cells 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-20662527-4	chr10	20662415	20662615	+	978.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013875, intron 1 of 12)	RLTR28B|LTR|ERVL	62563.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-41950884-3	chr9	41950779	41950979	+	789.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	126334.0	NM_001357261	20660.0	Mm.121920	NM_011436	ENSMUSG00000049313	Sorl1	2900010L19Rik|AI596264|AW261561|LR11|SorLA|gp250|mSorLA	sortilin-related receptor, LDLR class A repeats-containing	protein-coding	0.322600244070043	-0.0655021328846617	0.910406610472727	-0.07650445318083	0.213058410842347	-0.0641106005549261	-0.070328248795098	-0.0756631000509046	-2.5184674994872	0.265474373057167	1
Merged-chr2-3358124-4	chr2	3358032	3358232	+	940.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145921, intron 3 of 7)	intron (NM_145921, intron 3 of 7)	8437.0	NM_145921	99035.0	Mm.13808	NM_145921	ENSMUSG00000026645	Olah	AI607300|E230009B14Rik|Thedc1	oleoyl-ACP hydrolase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-125419034-4	chr10	125418946	125419146	+	668.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-90083.0	NM_001358496	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95653840-4	chr3	95653767	95653967	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4854.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96255654-2	chr3	96255554	96255754	+	558.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7663.0	NM_033596	97122.0	Mm.227295	NM_033596	ENSMUSG00000091405	Hist2h4	H4|X04652	histone cluster 2, H4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-58511629-4	chr16	58511426	58511626	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357433, intron 1 of 10)	B1_Mus2|SINE|Alu	11900.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-34945331-4	chr8	34945227	34945427	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175091, intron 1 of 26)	MTD|LTR|ERVL-MaLR	20363.0	NM_175091	21951.0	Mm.88364	NM_175091	ENSMUSG00000031529	Tnks	4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	protein-coding	1.65213083006492	1.9641923145815	2.11890793650767	1.72721861820245	1.7788037388958	1.83889897394563	1.63366136144896	2.07234500095466	-0.110553545833582	0.909571783466316	0.998431161219273
Merged-chr15-100375259-2	chr15	100375159	100375359	+	671.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001002900, intron 3 of 3)	B3|SINE|B2	10674.0	NM_001002900	380975.0	Mm.268451	NM_001002900	ENSMUSG00000093550	Higd1c	Gm921|HIG1-4|Yghl1-4	HIG1 domain family, member 1C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134595016-5	chr6	134594845	134595045	+	970.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR33|LTR|ERVL	-28032.0	NM_008514	16974.0	Mm.321990	NM_008514	ENSMUSG00000030201	Lrp6	C030016K15Rik|Cd|Gw|ska26|ska<m26Jus>|skax26	low density lipoprotein receptor-related protein 6	protein-coding	3.85572082427773	4.60682765141233	4.96680334536724	4.23990697214899	4.72802140025097	4.21247509085105	4.33169762433568	4.59934088518941	0.0228621897402218	0.955157475303219	0.998431161219273
Merged-chr2-112267054-4	chr2	112266941	112267141	+	906.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_133649, exon 1 of 25)	exon (NM_133649, exon 1 of 25)	727.0	NM_133649	107723.0	Mm.491155	NM_133648	ENSMUSG00000027130	Slc12a6	9530023I19Rik|KCC3|gaxp	solute carrier family 12, member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-140622566-2	chr6	140622466	140622666	+	629.900024	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178803)	promoter-TSS (NM_178803)	-97.0	NM_178803	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59614385-4	chr15	59614284	59614484	+	993.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34270.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	3.47320920086122	3.32547176327811	3.393225787	3.02308804980749	3.07336669489487	4.18251630765717	2.61909508396938	3.03903330995591	0.0856859754340025	0.889840837276064	0.998431161219273
Merged-chr15-58697303-3	chr15	58697203	58697403	+	812.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPEY5_I-int|LTR|ERVK	126124.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-53884913-2	chr11	53884813	53885013	+	679.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011396, intron 1 of 9)	ID_B1|SINE|B4	6790.0	NM_011396	20520.0	Mm.42253	NM_011396	ENSMUSG00000018900	Slc22a5	Lstpl|Octn2|jvs	solute carrier family 22 (organic cation transporter), member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-3258860-4	chr9	3258760	3258960	+	929.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	-59047.0	NR_027988	114673.0	Mm.422774	NM_053265	ENSMUSG00000042360	4930433N12Rik	-	RIKEN cDNA 4930433N12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-5334394-4	chr18	5334276	5334476	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178722)	promoter-TSS (NM_178722)	63.0	NM_178722	240186.0	Mm.118257	NM_178722	ENSMUSG00000050945	Zfp438	9430031G09|9430091M14Rik|B830013J05Rik	zinc finger protein 438	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-30551658-2	chr14	30551558	30551758	+	728.916687	f1_balb.idr|f1_c57bl6.idr	intron (NM_009388, intron 1 of 13)	intron (NM_009388, intron 1 of 13)	2527.0	NM_009388	21881.0	Mm.290692	NM_009388	ENSMUSG00000021957	Tkt	p68	transketolase	protein-coding	-1.21575676353841	-1.1882771616738	-1.1995328574972	-1.2087786211754	-1.21524488394202	-1.18583800543462	-1.19698481468061	-0.540595393272118	2.74438217975722	0.425994238664144	1
Merged-chr18-88260549-2	chr18	88260449	88260649	+	863.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	633658.0	NM_018821	54607.0	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-44546868-2	chr11	44546768	44546968	+	825.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166553, intron 4 of 5)	intron (NM_001166553, intron 4 of 5)	27491.0	NM_001166553	74315.0	Mm.156771	NM_028862	ENSMUSG00000019189	Rnf145	3732413I11Rik|TMRF1	ring finger protein 145	protein-coding	-1.04273303801122	-0.992738328175704	-1.169860452315	-1.01845018872091	-1.18125183441808	-0.99044468608868	-1.16746441955999	-1.1769983813846	-1.25511226009293	0.658425867462728	1
Merged-chr7-97977614-3	chr7	97977505	97977705	+	718.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177696, intron 10 of 17)	intron (NM_177696, intron 10 of 17)	57647.0	NM_177696	233537.0	Mm.375772	NM_177696	ENSMUSG00000035582	Gdpd4	4921513O04	glycerophosphodiester phosphodiesterase domain containing 4	protein-coding	-1.29633872064033	-1.26720680975202	-1.27768629845203	-1.28629446248818	-0.70879630402184	-1.2649358608345	-1.2753139719142	-1.28475360524138	2.50884260628271	0.468217847016783	1
Merged-chr1-160293641-3	chr1	160293540	160293740	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038621, intron 2 of 8)	intron (NM_001038621, intron 2 of 8)	2332.0	NR_035448	100316784.0		NR_035448	ENSMUSG00000089204	Mir1927	mmu-mir-1927	microRNA 1927	ncRNA	0.817174954608165	0.621985769584709	0.372700632844203	0.363688863628132	0.827764219488952	1.72521218066369	0.375250949344765	0.574266418441802	2.0821077755673	0.212431009218074	0.702047781144169
Merged-chr17-34119911-2	chr17	34119799	34119999	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_037970)	promoter-TSS (NR_037970)	1.0	NR_037970	14312.0	Mm.3444	NM_010238	ENSMUSG00000024335	Brd2	AW228947|D17H6S113E|Frg-1|Fsrg-1|Fsrg1|Nat|Ring3|Rnf3|mKIAA4005	bromodomain containing 2	protein-coding	5.32054494796515	4.68759173290909	5.21443403610907	5.50884171370954	5.42515739447707	5.33629435759796	5.14584190594213	4.85368019385284	-0.0166217848265961	0.95747393707362	0.998431161219273
Merged-chr5-136102341-2	chr5	136102241	136102441	+	701.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_133914, exon 13 of 21)	exon (NM_133914, exon 13 of 21)	-3181.0	NR_106002	102465626.0		NR_106002	ENSMUSG00000099003	Mir7035	Gm27661|mmu-mir-7035	microRNA 7035	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-11050354-6	chr19	11050114	11050314	+	896.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_102366, intron 1 of 2)	intron (NR_102366, intron 1 of 2)	352.0	NR_102366	107350.0	Mm.6381	NM_001177351	ENSMUSG00000075010	AW112010	-	expressed sequence AW112010	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-25984767-4	chr17	25984674	25984874	+	871.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347334, intron 1 of 11)	intron (NM_001347334, intron 1 of 11)	1022.0	NR_151779	50817.0	Mm.216072	NM_015830	ENSMUSG00000037326	Capn15	Solh	calpain 15	protein-coding	0.683820428357246	0.785814438024871	3.09815021693573	2.27994309642837	0.690795462443042	1.58036169091022	0.761546626740149	1.61593046757972	-2.12095729464059	0.373242500045862	0.86607081914974
Merged-chr2-26351641-2	chr2	26351541	26351741	+	807.25	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001037747)	TTS (NM_001037747)	469.0	NM_026828	52838.0	Mm.31239	NM_026828	ENSMUSG00000075467	Dnlz	1110034G11Rik|D2Bwg1335e|HEP1	DNL-type zinc finger	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-29838873-3	chr13	29838769	29838969	+	906.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001308486, intron 4 of 5)	intron (NM_001308486, intron 4 of 5)	16804.0	NR_131896	68916.0	Mm.212227	NM_144536	ENSMUSG00000006191	Cdkal1	1190005B03Rik|6620401C13Rik	CDK5 regulatory subunit associated protein 1-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-147922979-4	chr4	147922877	147923077	+	817.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011122, intron 10 of 18)	intron (NM_011122, intron 10 of 18)	13799.0	NM_011122	18822.0	Mm.23951	NM_011122	ENSMUSG00000019055	Plod1	2410042F05Rik|AI854890|AV007929|Lh1|Plod	procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-7056740-4	chr19	7056591	7056791	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134147)	promoter-TSS (NM_134147)	-77.0	NM_134147	107227.0	Mm.439977	NM_134147	ENSMUSG00000036278	Macrod1	AI604841|AW743046|D930010J01Rik|Lrp16	MACRO domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-77456658-2	chr9	77456558	77456758	+	613.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001146048, intron 7 of 13)	intron (NM_001146048, intron 7 of 13)	-57242.0	NR_040378	70487.0	Mm.58958	NR_040378	ENSMUSG00000099170	5730403I07Rik	-	RIKEN cDNA 5730403I07 gene	ncRNA	-1.3599752376502	-1.17122565963343	-1.48876449629253	-1.49679784522241	-1.50905405636673	-1.47686547648293	-1.48655058322419	-1.49535987960481	-2.0793664255897	0.544624818471572	1
Merged-chr3-79089262-4	chr3	79089157	79089357	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001099624, intron 11 of 23)	intron (NM_001099624, intron 11 of 23)	55630.0	NM_001310536	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	3.56998466201014	2.92715241084107	2.696190511691	2.96668458327901	3.01725347886843	3.88444324612415	2.84969763596287	2.98205548164439	0.264812666889012	0.678475182917005	0.994999283375466
Merged-chr15-25796552-3	chr15	25796453	25796653	+	773.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001353142, intron 9 of 20)	B3A|SINE|B2	22540.0	NM_001353141	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-32657069-4	chr4	32656996	32657196	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081392)	promoter-TSS (NM_001081392)	-23.0	NM_001081392	100019.0	Mm.24627	NM_133874	ENSMUSG00000058006	Mdn1	4833432B22Rik|A130070M06|AA958993|D4Abb1e|Gm135	midasin AAA ATPase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100619667-4	chr11	100619551	100619751	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_019795, exon 1 of 14)	5' UTR (NM_019795, exon 1 of 14)	517.0	NM_019795	56354.0	Mm.402409	NM_019795	ENSMUSG00000014195	Dnajc7	2010003F24Rik|2010004G07Rik|CCRP|Ttc2|mDj11|mTpr2	DnaJ heat shock protein family (Hsp40) member C7	protein-coding	3.32961312825875	2.6198127494781	3.53408671117526	4.48557498599072	4.23631973316506	4.25765652831741	2.71991675839755	4.21129247736207	0.44470351792608	0.456233979642843	0.919264728457769
Merged-chr8-71471231-2	chr8	71471152	71471352	+	721.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001294259, intron 1 of 3)	intron (NM_001294259, intron 1 of 3)	2058.0	NR_122114	66498.0	Mm.260360	NM_025600	ENSMUSG00000074247	Dda1	1500034J01Rik|1700095J19Rik|R74921	DET1 and DDB1 associated 1	protein-coding	0.607859453894437	0.848210543381184	0.361267384958346	0.35617149091933	0.722970305968	0.857788285498631	0.362724610797682	0.777502328003437	0.829166219267599	0.637190319945271	1
Merged-chr11-46699076-1	chr11	46698976	46699176	+	642.0	f1_balb.idr	promoter-TSS (NM_001161355)	promoter-TSS (NM_001161355)	-246.0	NM_001161355	171284.0	Mm.234654	NM_134249	ENSMUSG00000040413	Timd2	AA816106|AU019358|AU019662|C78111|G9D3|TIM-2|Tim2	T cell immunoglobulin and mucin domain containing 2	protein-coding	1.58533976093637	2.21575119051336	0.880420808768894	0.864785274623076	1.36066622497489	2.05009348194988	1.32145384737301	1.09327092316073	-0.0545374192858395	0.966243360469328	0.998431161219273
Merged-chr5-101922671-2	chr5	101922571	101922771	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 20 of 66)	intron (NM_172882, intron 20 of 66)	147250.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-120122372-4	chr1	120122242	120122442	+	867.8916630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001172074, intron 1 of 4)	intron (NM_001172074, intron 1 of 4)	1155.0	NM_001172074	73103.0	Mm.271602	NM_028439	ENSMUSG00000026388	3110009E18Rik	-	RIKEN cDNA 3110009E18 gene	protein-coding	-0.734697168562934	-1.28094420828655	-1.29131886204401	-1.29984091153697	-1.31008363841169	-1.2786959775384	-1.28897026783925	-1.29831546875223	-2.42902550944018	0.482518537989684	1
Merged-chr2-168469297-3	chr2	168469161	168469361	+	705.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	121104.0	NM_001291178	18019.0	Mm.116802	NM_010899	ENSMUSG00000027544	Nfatc2	AI607462|NF-ATc2|NF-ATp|NFAT1|NFAT1-D|Nfatp	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2	protein-coding	2.69958289807236	1.66945696457475	1.3434762034876	2.59164936747446	3.37495187572031	1.91658244291203	2.20336092877611	2.7840804571871	0.990808245609297	0.285909661783498	0.79047889608285
Merged-chr17-80126863-2	chr17	80126763	80126963	+	705.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_176963)	promoter-TSS (NM_176963)	-608.0	NM_176963	319625.0	Mm.29098	NM_176963	ENSMUSG00000035473	Galm	A530057M15Rik|AU015645|AU020959	galactose mutarotase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-54601290-3	chr3	54601191	54601391	+	944.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-91524.0	NR_152185	56790.0	Mm.486375	NM_019995	ENSMUSG00000027751	Supt20	AA667204|AI450544|D3Ertd300e|Fam48a|Supt20h|p38IP	suppressor of Ty 20	protein-coding	5.42297134779185	4.99294585894244	4.8068848488574	5.22302899472755	2.06438303627004	1.58659745601003	1.49869385089508	1.41756055426058	-6.02190879852114	4.29766709950029e-11	1.0083830006574e-08
Merged-chr7-126584771-4	chr7	126584617	126584817	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138310)	promoter-TSS (NM_138310)	-291.0	NM_138310	171504.0	Mm.170665	NM_138310	ENSMUSG00000042759	Apobr	Apob-48r|Apob48r	apolipoprotein B receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-134552113-2	chr7	134552013	134552213	+	762.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-118574.0	NM_001033420	330662.0	Mm.436572	NM_001033420	ENSMUSG00000058325	Dock1	9130006G06Rik|AI854900|D630004B07Rik|b2b3190Clo	dedicator of cytokinesis 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115653945-1	chr5	115653845	115654045	+	786.0	f1_balb.idr	promoter-TSS (NR_151603)	promoter-TSS (NR_151603)	-359.0	NR_151600	75665.0	Mm.233914	NM_001080808	ENSMUSG00000041609	Bicdl1	2210403N09Rik|BICDR-1|Ccdc64	BICD family like cargo adaptor 1	protein-coding	0.317740753073435	0.33934560794184	0.907151887442845	0.326822061675718	0.708190420581884	0.340936333261397	0.802680776758551	0.971661790921219	1.35238332478755	0.472459006727235	1
Merged-chr12-33010217-3	chr12	33010102	33010302	+	921.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56016.0	NM_198710	19027.0	Mm.246304	NM_013635	ENSMUSG00000020570	Sypl	AI314763|AI604763|D12Ertd446e|PanI|Pphn|Sypl1	synaptophysin-like protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16104144-6	chr7	16104004	16104204	+	874.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025898, intron 1 of 10)	intron (NM_025898, intron 1 of 10)	5524.0	NM_025898	108124.0	Mm.104540	NM_025898	ENSMUSG00000006024	Napa	1500039N14Rik|AW209189|RA81|SNAP-alpha|SNAPA|SNARE|a-SNAP|hyh	N-ethylmaleimide sensitive fusion protein attachment protein alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-63914897-2	chr7	63914814	63915014	+	624.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021366, intron 1 of 1)	intron (NM_021366, intron 1 of 1)	-1943.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	-2.18361151404719	-2.02201993626881	-2.16403530460334	-2.1710062446989	-2.18164157430194	-2.15370992785044	-2.16211418110791	-2.16975844975469	-0.683654500252594	0.846597994014493	1
Merged-chr15-100493575-2	chr15	100493475	100493675	+	702.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153407, intron 1 of 4)	B1_Mur3|SINE|Alu	1664.0	NM_153407	207785.0	Mm.294969	NM_153407	ENSMUSG00000044636	Csrnp2	CSRNP-2|Csnrp2|taip-12	cysteine-serine-rich nuclear protein 2	protein-coding	2.35445610496711	1.42706473672396	2.12883846895427	1.35446238485809	2.37487288909944	1.43598002591709	2.14636404525912	1.36015984056116	0.0404634657853333	0.969792745024511	0.998431161219273
Merged-chr7-45368578-2	chr7	45368478	45368678	+	628.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_015480)	TTS (NR_015480)	1345.0	NR_027802	50994.0	Mm.389897	NM_016664	ENSMUSG00000091510	Mtag2	MAG	metastasis associated gene 2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-33047063-4	chr2	33046967	33047167	+	909.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355201, intron 6 of 29)	ORR1F|LTR|ERVL-MaLR	39390.0	NM_001355202	99326.0	Mm.41290	NM_178888	ENSMUSG00000038860	Garnl3	AW120551	GTPase activating RANGAP domain-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-155101849-1	chr2	155101749	155101949	+	656.0	f0_balb.idr	Intergenic	Intergenic	-1770.0	NR_040634	100504268.0	Mm.410858	NR_040634	ENSMUSG00000087254	2310005A03Rik	-	RIKEN cDNA 2310005A03 gene	ncRNA	1.97798445756181	2.52881298905099	2.01579004953308	1.82625706342539	1.60989393081763	1.77721879906129	2.03102136669645	2.38724591439241	-0.329377929016639	0.723867855852053	0.998431161219273
Merged-chr19-5816125-4	chr19	5816023	5816223	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13451.0	NR_002847	72289.0	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-121800132-3	chr11	121800039	121800239	+	782.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30079.0	NM_029049	74675.0	Mm.61213	NM_029049	ENSMUSG00000039198	Ptchd3	4930451E13Rik|4933440L20Rik|RNDEu-3	patched domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-122138844-2	chr7	122138744	122138944	+	770.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_021608, intron 4 of 5)	B4|SINE|B4	5803.0	NM_021608	59288.0	Mm.478285	NM_021608	ENSMUSG00000030868	Dctn5	4930427E12Rik|C78178|b2b315Clo	dynactin 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-30725101-4	chr13	30725023	30725223	+	991.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24110.0	NM_001347508	16364.0	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-91194756-4	chr15	91194645	91194845	+	966.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	-2738.0	NM_001358967	26874.0	Mm.295456	NM_011994	ENSMUSG00000055782	Abcd2	ABC39|ALDL1|ALDR|ALDRP	ATP-binding cassette, sub-family D (ALD), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-75231807-2	chr14	75231707	75231907	+	752.333313	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001247984)	TTS (NM_001247984)	-10480.0	NM_019775	56373.0	Mm.24242	NM_019775	ENSMUSG00000021999	Cpb2	1110032P04Rik|4930405E17Rik|AI255929|CPR|Cpu|TAFI	carboxypeptidase B2 (plasma)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-85971140-5	chr3	85971049	85971249	+	835.723816	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	31342.0	NM_001001650	368202.0	Mm.253822	NM_001001650	ENSMUSG00000049013	Prss48	Esspl|Gm1019	protease, serine 48	protein-coding	2.02805179934813	2.14668686191668	1.9692262442577	0.857652750417069	1.04293184248685	0.899417754170915	1.64098588055475	0.860562606297704	-2.27742340773438	0.0890005319153988	0.459874410818671
Merged-chr11-20201206-4	chr11	20201080	20201280	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008996)	promoter-TSS (NM_008996)	-232.0	NM_008996	19324.0	Mm.271944	NM_008996	ENSMUSG00000020149	Rab1a	Gtbp|Rab-1|Rab1|Ypt1|mKIAA3012	RAB1A, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-70385720-4	chr16	70385625	70385825	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028803, intron 2 of 15)	intron (NM_028803, intron 2 of 15)	71776.0	NM_028803	74185.0	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	2.0867374432438	2.4881608373732	2.99911637703254	1.6640857043833	3.04945555409614	2.19627935996602	3.02232477863159	2.21178976331966	0.578767668505246	0.48657510821374	0.932503166794264
Merged-chr13-23467031-3	chr13	23466946	23467146	+	909.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1145.0	NM_013483	12231.0	Mm.1420	NM_013483	ENSMUSG00000000706	Btn1a1	Btn	butyrophilin, subfamily 1, member A1	protein-coding	-0.45895908209469	0.547484783483328	-0.448324514606257	-0.26649429607975	-0.291919769979817	-0.442051148892309	-0.44719128132722	-0.451606464734659	-2.90471540053991	0.235514399580502	1
Merged-chr10-80572165-2	chr10	80572065	80572265	+	739.799988	f1_balb.idr|f1_c57bl6.idr	intron (NM_078477, intron 1 of 1)	intron (NM_078477, intron 1 of 1)	5131.0	NM_078477	118445.0	Mm.41513	NM_078477	ENSMUSG00000035397	Klf16	AI843742|BTEB4|DRRF	Kruppel-like factor 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100962563-2	chr7	100962455	100962655	+	564.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_183168, intron 1 of 2)	MIR3|SINE|MIR	1811.0	NM_183168	233571.0	Mm.235193	NM_183168	ENSMUSG00000048779	P2ry6	2010204J23Rik|P2Y6	pyrimidinergic receptor P2Y, G-protein coupled, 6	protein-coding	-0.174446769622927	-0.179527065045729	-0.484383489866985	-0.48640739382933	-0.167343193184504	-0.481128644370943	-0.483801311327917	-0.486055236492458	-0.902057894244666	0.734454628314494	1
Merged-chr2-119758438-2	chr2	119758338	119758538	+	778.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008523)	promoter-TSS (NM_008523)	87.0	NM_206941	17005.0	Mm.1740	NM_008523	ENSMUSG00000027297	Ltk	-	leukocyte tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26466921-4	chr17	26466807	26467007	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41565.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-120493811-6	chr6	120493669	120493869	+	793.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033567)	promoter-TSS (NM_033567)	38.0	NM_033567	94047.0	Mm.23088	NM_033567	ENSMUSG00000094626	Tmem121b	AW048664|Cecr6	transmembrane protein 121B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-31801403-4	chr13	31801300	31801500	+	772.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5246.0	NM_008592	17300.0	Mm.12949	NM_008592	ENSMUSG00000050295	Foxc1	FREAC3|Fkh1|Mf1|Mf4|ch|fkh-1|frkhda	forkhead box C1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118021916-2	chr11	118021816	118022016	+	582.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001167746, exon 81 of 81)	3' UTR (NM_001167746, exon 81 of 81)	19646.0	NR_105898	102466768.0		NR_105898	ENSMUSG00000098958	Mir6933	Gm27856|mmu-mir-6933	microRNA 6933	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-103920500-4	chr13	103920405	103920605	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289474)	promoter-TSS (NM_001289474)	81.0	NM_001289473	59079.0	Mm.277354	NM_021563	ENSMUSG00000021709	Erbin	1700028E05Rik|Erbb2ip|mKIAA1225	Erbb2 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-20014269-3	chr16	20014169	20014369	+	940.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	-31220.0	NM_183390	239743.0	Mm.86699	NM_183390	ENSMUSG00000043008	Klhl6	-	kelch-like 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-59293498-4	chr7	59293401	59293601	+	853.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011668, intron 11 of 12)	intron (NM_011668, intron 11 of 12)	53923.0	NR_146600	102642160.0		NR_146600		Gm22496	-	predicted gene, 22496	snoRNA	1.56862239313298	1.58536305613198	1.127732132866	2.33644784798002	1.70374888076744	2.03891225747893	1.54745003319319	2.01199086015603	0.267916151351434	0.804827757945243	0.998431161219273
Merged-chr10-100487472-4	chr10	100487354	100487554	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001110013)	promoter-TSS (NM_001110013)	-107.0	NM_001110013	237500.0	Mm.296805	NM_001033332	ENSMUSG00000036676	Tmtc3	9130014E20Rik|B130008E12Rik|mSmile	transmembrane and tetratricopeptide repeat containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-31732443-3	chr11	31732318	31732518	+	964.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60556.0	NM_001024919	69556.0	Mm.34183	NM_001024919	ENSMUSG00000044502	Bod1	2310022M17Rik|BOD2.1|Fam44b	biorientation of chromosomes in cell division 1	protein-coding	4.75939712892178	5.15428045821704	4.86643567576333	4.50505837959933	3.49828547832388	4.24975840474215	3.89117850900581	3.50754666334781	-1.33246531463712	0.00113503098492048	0.0214288897738764
Merged-chr18-60827013-1	chr18	60826913	60827113	+	543.0	f1_balb.idr	intron (NM_011552, intron 16 of 24)	intron (NM_011552, intron 16 of 24)	14937.0	NR_039567	100628611.0		NR_039567	ENSMUSG00000093327	Mir5107	mir-5107|mmu-mir-5107|mu-mir-5107	microRNA 5107	ncRNA	0.720857971251665	1.80367511435532	0.759325805449614	1.93656553484826	0.724538664801827	0.781168711047687	1.50773620400563	1.7775560626057	-0.488331803064407	0.747560168158253	0.998431161219273
Merged-chr8-123983013-4	chr8	123982909	123983109	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_019552, exon 1 of 13)	5' UTR (NM_019552, exon 1 of 13)	113.0	NM_019552	56199.0	Mm.274243	NM_019552	ENSMUSG00000031974	Abcb10	Abc-me|Abcb12	ATP-binding cassette, sub-family B (MDR/TAP), member 10	protein-coding	6.24075783540639	6.52031164745205	6.33271492692249	7.03972838470062	6.26688161033466	6.68556035617268	6.77982563454734	6.86781575193545	0.102463409773574	0.650217129203148	0.985422869512088
Merged-chr12-25393959-4	chr12	25393861	25394061	+	910.18335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	264787.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	3.99539935320874	3.61224028698068	3.15511954652243	5.42837562205627	3.54855357077819	3.53714638869466	3.05183219238046	4.4095545065937	-0.835937049737993	0.160398952992327	0.620275578212741
Merged-chr2-90454574-2	chr2	90454474	90454674	+	673.450012	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 11 of 23)	MER58A|DNA|hAT-Charlie	24600.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101270760-2	chr15	101270660	101270860	+	832.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_010444, exon 2 of 7)	exon (NM_010444, exon 2 of 7)	3914.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-23719585-3	chr17	23719423	23719623	+	970.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6813.0	NM_023058	268930.0	Mm.182193	NM_023058	ENSMUSG00000023908	Pkmyt1	6230424P17|AW209059|Myt1	protein kinase, membrane associated tyrosine/threonine 1	protein-coding	1.39882210940667	1.55075090559751	1.0975496016696	1.74436268193084	1.77783144261718	1.56137063550205	2.13847977257667	2.2354128096776	1.55638027764865	0.152746943792852	0.606698648589328
Merged-chr5-123443359-2	chr5	123443259	123443459	+	564.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133917, intron 6 of 16)	intron (NM_133917, intron 6 of 16)	38742.0	NM_029594	76399.0	Mm.75049	NM_029594	ENSMUSG00000029437	Il31	1700013B14Rik	interleukin 31	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-145934762-4	chr2	145934668	145934868	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025820)	promoter-TSS (NM_025820)	-16.0	NM_175280	78774.0	Mm.136347	NM_175280	ENSMUSG00000037143	Cfap61	4930529M08Rik|BB178539|BC024760	cilia and flagella associated protein 61	protein-coding	3.0743137851095	3.61660883839897	2.15484421856697	1.85700506322574	3.38755898353407	3.29339570963099	3.95795927437629	3.61920768329231	1.16700908587849	0.084824426811276	0.44758175503217
Merged-chr7-139249076-4	chr7	139249005	139249205	+	957.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001098636, intron 1 of 2)	intron (NM_001098636, intron 1 of 2)	623.0	NM_001098636	101631.0	Mm.334300	NM_001033206	ENSMUSG00000060260	Pwwp2b	AI594893|D7Ertd517e|D930023J19Rik|Pwwp2	PWWP domain containing 2B	protein-coding	3.01012913073866	1.67815850422019	2.75980245439606	1.96948739542428	2.028104067847	2.11659108326839	3.22482040328803	1.80070827670584	-0.0883774055318442	0.921734101103257	0.998431161219273
Merged-chr7-16366417-2	chr7	16366317	16366517	+	666.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_019748, intron 5 of 8)	intron (NM_019748, intron 5 of 8)	21479.0	NM_001285892	56459.0	Mm.258530	NM_019748	ENSMUSG00000052833	Sae1	2400010M20Rik|2610044L12Rik|AL033372|AOS1|AW743391|D7Ertd177e|HSPC140|Sua1|Uble1a	SUMO1 activating enzyme subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-46477035-4	chr18	46476920	46477120	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11204.0	NR_045438	72076.0	Mm.82766	NM_028086		Mospd4	2010013H21Rik	motile sperm domain containing 4	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-73711724-1	chr6	73711624	73711824	+	688.0	f0_balb.idr	Intergenic	L3|LINE|CR1	-240703.0	NR_108032	73408.0	Mm.233629	NR_108032	ENSMUSG00000107408	1700065L07Rik	-	RIKEN cDNA 1700065L07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-105420359-2	chr11	105420259	105420459	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039242, intron 4 of 5)	Charlie4a|DNA|hAT-Charlie	36376.0	NM_172568	632687.0	Mm.121570	NM_172568	ENSMUSG00000078627	March10	4933417C16Rik|AV039223|Rnf190	membrane-associated ring finger (C3HC4) 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83936588-2	chr11	83936488	83936688	+	735.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5502.0	NM_030096	78394.0	Mm.280544	NM_030096	ENSMUSG00000020677	Ddx52	2700029C06Rik|ROK1	DEAD (Asp-Glu-Ala-Asp) box polypeptide 52	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67378000-3	chr10	67377891	67378091	+	897.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-92710.0	NM_001036293	641340.0	Mm.136223	NM_001036293	ENSMUSG00000075000	Nrbf2	NRBF-2	nuclear receptor binding factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-33227494-4	chr2	33227391	33227591	+	727.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011923, intron 1 of 4)	L2b|LINE|L2	11530.0	NM_011923	26360.0	Mm.208919	NM_011923	ENSMUSG00000004105	Angptl2	AI593246|AW260363|Arp2	angiopoietin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-115902504-4	chr3	115902405	115902605	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027193, intron 4 of 7)	intron (NM_027193, intron 4 of 7)	14322.0	NM_027193	69740.0	Mm.5915	NM_027193	ENSMUSG00000033554	Dph5	2410012M04Rik|AU045680|C80186	diphthamide biosynthesis 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-20722949-2	chr14	20722849	20723049	+	786.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_010811)	TTS (NM_010811)	11613.0	NM_010811	17423.0	Mm.4084	NM_010811	ENSMUSG00000039308	Ndst2	Mndns|NDST-2	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-5758006-4	chr11	5757916	5758116	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361588, intron 1 of 6)	RMER16_Mm|LTR|ERVK	-4134.0	NR_015577	76508.0	Mm.260203	NR_015577	ENSMUSG00000083844	Ube2d-ps	1600028I17Rik|2210015D19Rik|AI596465	ubiquitin-conjugating enzyme E2D, pseudogene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-94236917-4	chr16	94236824	94237024	+	971.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360045, intron 5 of 10)	intron (NM_001360045, intron 5 of 10)	53367.0	NM_001360045	110948.0	Mm.30921	NM_139145	ENSMUSG00000040820	Hlcs	410I21.SP6|D16Jhu34	holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55642108-4	chr19	55642027	55642227	+	917.757141	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045318, exon 4 of 4)	non-coding (NR_045318, exon 4 of 4)	60077.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81123854-4	chr15	81123782	81123982	+	658.6190190000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001082536, intron 1 of 13)	B1_Mur4|SINE|Alu	-18835.0	NM_153049	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	1.20687460063505	0.723076251326859	0.712212748247761	1.28211260011998	0.991096709810207	1.50798218303198	1.33819732801842	0.887368537460163	0.846231946101873	0.553482381852058	0.959685872563428
Merged-chr10-127745671-2	chr10	127745571	127745771	+	594.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_198035, exon 2 of 2)	3' UTR (NM_198035, exon 2 of 2)	6127.0	NM_007412	11536.0	Mm.2857	NM_007412	ENSMUSG00000058396	Gpr182	AM-R|Admr|G10-D|Gpcr17|Gpcr22|MB10|NOW	G protein-coupled receptor 182	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-160057678-4	chr2	160057562	160057762	+	973.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41009.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-95560771-8	chr9	95560702	95560902	+	932.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_198414, exon 1 of 1)	exon (NM_198414, exon 1 of 1)	985.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-86544870-4	chr11	86544770	86544970	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199047)	promoter-TSS (NM_001199047)	-63.0	NM_001114334	72508.0	Mm.394280	NM_028259	ENSMUSG00000020516	Rps6kb1	2610318I15Rik|4732464A07Rik|70kDa|AA959758|AI256796|AI314060|P70S6K1|S6K|S6K1|p70/85s6k|p70s6k	ribosomal protein S6 kinase, polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126894941-3	chr7	126894839	126895039	+	700.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026827, intron 3 of 5)	L2c|LINE|L2	3339.0	NM_026827	68742.0	Mm.248646	NM_026827	ENSMUSG00000060538	Tmem219	1110032O16Rik|2900045G02Rik|IGFBP-3R	transmembrane protein 219	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-102018266-4	chr7	102018175	102018375	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010531)	promoter-TSS (NM_010531)	-120.0	NM_010531	16068.0	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125131862-4	chr6	125131765	125131965	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138747)	promoter-TSS (NM_138747)	-18.0	NM_138747	110109.0	Mm.29203	NM_138747	ENSMUSG00000038279	Nop2	120kDa|A530002O17|Nol1	NOP2 nucleolar protein	protein-coding	6.8012551878798	6.70247096888368	6.61690658356459	6.76356953719882	6.62435447362452	6.59921249438389	6.58436824671154	7.11061543356029	0.0271841262678565	0.887380077519885	0.998431161219273
Merged-chr17-44664094-3	chr17	44663991	44664191	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271627, intron 4 of 7)	intron (NM_001271627, intron 4 of 7)	72085.0	NR_073425	12393.0	Mm.391013	NM_009820	ENSMUSG00000039153	Runx2	AML3|Cbf|Cbfa-1|Cbfa1|LS3|Osf2|PEBP2aA|Pebp2a1|Pebpa2a	runt related transcription factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-80613581-4	chr1	80613475	80613675	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175291, intron 4 of 55)	intron (NM_175291, intron 4 of 55)	51777.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127426912-3	chr10	127426809	127427009	+	743.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359246, intron 1 of 23)	intron (NM_001359246, intron 1 of 23)	6042.0	NM_001359243	71750.0	Mm.29342	NM_027900	ENSMUSG00000025404	R3hdm2	1300003K24Rik|AU041262|mKIAA1002	R3H domain containing 2	protein-coding	1.39511547434934	0.974546356776695	1.87507302788886	1.71397576735073	0.922283274886801	1.41620411298011	2.07820874542894	1.47866620207704	0.0390875293826091	0.975071475800076	0.998431161219273
Merged-chr9-61032299-4	chr9	61032224	61032424	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15255.0	NR_040767	330956.0	Mm.207985	NR_040767	ENSMUSG00000111290	Gm5122	A430102L10	predicted gene 5122	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-3506122-4	chr7	3506019	3506219	+	777.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3495.0	NM_177363	245126.0	Mm.245747	NM_177363	ENSMUSG00000053338	Tarm1	9930022N03Rik|Gm9904|OLT-2	T cell-interacting, activating receptor on myeloid cells 1	protein-coding	-0.320127817667159	-0.307844746726997	-0.311881611396666	0.199848394003558	0.231307974191947	-0.306933067145692	-0.136588928597111	-0.314445605671568	0.453095371410966	0.856018076727154	1
Merged-chr6-29868073-2	chr6	29867973	29868173	+	845.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347084, intron 3 of 17)	intron (NM_001347084, intron 3 of 17)	8477.0	NM_001171001	74340.0	Mm.210899	NM_021414	ENSMUSG00000029772	Ahcyl2	4631427C17Rik|AI227036|Adohcyase3|mKIAA0828	S-adenosylhomocysteine hydrolase-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-56793229-2	chr4	56793129	56793329	+	624.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026079, intron 6 of 36)	RMER15|LTR|ERVL	-9100.0	NM_001081420	230234.0	Mm.268148	NM_001081420	ENSMUSG00000038827	Fam206a	simiate	family with sequence similarity 206, member A	protein-coding	0.967463424634465	1.04048650063705	0.408055502953783	0.838255280385992	0.97935550734027	0.417408236634678	0.409741245474053	0.40318265515062	-1.43308232045715	0.432921683399215	1
Merged-chr8-27202320-2	chr8	27202220	27202420	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029674, intron 1 of 8)	intron (NM_029674, intron 1 of 8)	227.0	NM_029674	76615.0	Mm.272794	NM_029674	ENSMUSG00000039720	Got1l1	1700083M11Rik	glutamic-oxaloacetic transaminase 1-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-128614676-2	chr1	128614546	128614746	+	909.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22347.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	3.25895975390354	2.33073701209202	2.41443592136149	3.00784342453575	3.44427765418524	2.92290550083455	3.11808565377743	1.79515448752232	0.24470681829554	0.746290451156039	0.998431161219273
Merged-chr11-75514501-3	chr11	75514409	75514609	+	858.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004157, intron 3 of 10)	intron (NM_001004157, intron 3 of 10)	968.0	NM_001004157	380713.0	Mm.10486	NM_001004157	ENSMUSG00000038188	Scarf1	AA986099|SREC|SREC-I|mKIAA0149	scavenger receptor class F, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-44371783-2	chr17	44371683	44371883	+	595.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	183211.0	NM_172621	224796.0	Mm.37666	NM_172621	ENSMUSG00000023959	Clic5	5730531E12Rik|B330005L24|Gm322|jbg|nmf318	chloride intracellular channel 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-55931871-5	chr17	55931745	55931945	+	874.5200199999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MMVL30-int|LTR|ERV1	13414.0	NM_146249	240120.0	Mm.441018	NM_146249	ENSMUSG00000062101	Zfp119b	-	zinc finger protein 119b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-108796339-2	chr12	108796239	108796439	+	667.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009537, intron 1 of 4)	intron (NM_009537, intron 1 of 4)	3028.0	NM_009537	22632.0	Mm.3868	NM_009537	ENSMUSG00000021264	Yy1	AW488674|NF-E1	YY1 transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-51689092-1	chr11	51688992	51689192	+	1000.0	f0_c57.idr	promoter-TSS (NM_025319)	promoter-TSS (NM_025319)	-458.0	NM_025319	66050.0	Mm.35693	NM_025319	ENSMUSG00000007777	0610009B22Rik	-	RIKEN cDNA 0610009B22 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-107700431-4	chr13	107700318	107700518	+	893.775024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13021.0	NR_045900	72257.0	Mm.234155	NR_045900	ENSMUSG00000102000	1700006H21Rik	-	RIKEN cDNA 1700006H21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-29272563-4	chr6	29272463	29272663	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023516)	promoter-TSS (NM_023516)	-63.0	NM_023516	69573.0	Mm.45161	NM_023516	ENSMUSG00000043421	Hilpda	2310016C08Rik|AW049004|Hig2	hypoxia inducible lipid droplet associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-23039808-1	chr2	23039708	23039908	+	1000.0	f0_balb.idr	intron (NM_001077190, intron 1 of 10)	CpG	433.0	NM_001077192	11308.0	Mm.205647	NM_007380	ENSMUSG00000058835	Abi1	E3B1|NAP1|Ssh3bp1|abi-1	abl-interactor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55635760-4	chr14	55635669	55635869	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024267)	promoter-TSS (NM_024267)	-85.0	NM_024267	75751.0	Mm.27546	NM_024267	ENSMUSG00000002319	Ipo4	8430408O15Rik|AA409693|Imp4a|RanBP4	importin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115083572-4	chr11	115083484	115083684	+	866.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7847.0	NM_001163753	58222.0	Mm.143789	NM_021411	ENSMUSG00000020732	Rab37	B230331O03Rik|B230354I04Rik	RAB37, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67696101-4	chr10	67696014	67696214	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-124155.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-59206785-4	chr3	59206608	59206808	+	978.857178	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177855, intron 15 of 43)	intron (NM_177855, intron 15 of 43)	4174.0	NM_028808	74191.0	Mm.90067	NM_028808	ENSMUSG00000036362	P2ry13	2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174	purinergic receptor P2Y, G-protein coupled 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85102413-2	chr12	85102313	85102513	+	914.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175198, intron 1 of 4)	intron (NM_175198, intron 1 of 4)	4018.0	NM_175198	73422.0	Mm.311944	NM_175198	ENSMUSG00000042320	Prox2	1700058C01Rik	prospero homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-14842409-4	chr8	14842305	14842505	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172910, intron 14 of 15)	intron (NM_172910, intron 14 of 15)	-46131.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-156560076-2	chr3	156559976	156560176	+	608.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040400, exon 2 of 2)	non-coding (NR_040400, exon 2 of 2)	1611.0	NR_040398	329782.0	Mm.183459	NR_040398	ENSMUSG00000085084	4930570G19Rik	C630015G22	RIKEN cDNA 4930570G19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-150666024-3	chr2	150665940	150666140	+	826.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080575, intron 1 of 13)	intron (NM_080575, intron 1 of 13)	-1454.0	NR_040331	109344.0	Mm.440012	NR_040331	ENSMUSG00000087406	E130215H24Rik	-	RIKEN cDNA E130215H24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-106298276-1	chr9	106298176	106298376	+	907.0	f1_balb.idr	intron (NM_027354, intron 7 of 10)	intron (NM_027354, intron 7 of 10)	17215.0	NM_027354	70235.0	Mm.23054	NM_027354	ENSMUSG00000023345	Poc1a	2510040D07Rik|Wdr51a|cha	POC1 centriolar protein A	protein-coding	0.53834242911406	0.56985541012191	1.29437581049802	1.42439841756146	1.07751221611055	0.572145799394398	0.561898191811487	1.14926963812899	-0.710533363606394	0.675596893239924	0.99440487726309
Merged-chr16-3884580-4	chr16	3884482	3884682	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029090)	promoter-TSS (NM_029090)	-37.0	NM_029090	74763.0	Mm.28403	NM_029090	ENSMUSG00000005982	Naa60	1200013P24Rik|AI315146|HAT4|Nat15|NatF	N(alpha)-acetyltransferase 60, NatF catalytic subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70779846-2	chr8	70779730	70779930	+	850.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_199308, exon 26 of 26)	exon (NM_199308, exon 26 of 26)	2968.0	NR_029440	72093.0	Mm.271208	NR_029440		2010320M18Rik	-	RIKEN cDNA 2010320M18 gene	ncRNA	0.220597086658049	0.91700210891988	0.862738320140243	0.231279761106074	1.09735098654178	0.247664257383041	0.23945904821302	0.232395738432272	-0.407448636114636	0.8414951521001	1
Merged-chr8-10836154-2	chr8	10836054	10836254	+	672.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER12C|LTR|ERVK	46300.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-177794649-2	chr1	177794549	177794749	+	991.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007422, intron 1 of 12)	intron (NM_007422, intron 1 of 12)	1860.0	NM_007422	11566.0	Mm.338021	NM_007422	ENSMUSG00000015961	Adss	AI314886|AS|Adss2	adenylosuccinate synthetase, non muscle	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-100016623-3	chr10	100016523	100016723	+	901.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347156, intron 1 of 8)	CpG	802.0	NM_013598	17311.0	Mm.45124	NM_013598	ENSMUSG00000019966	Kitl	Clo|Con|Gb|Kitlg|Mgf|SCF|SF|SLF|Sl|blz|contrasted	kit ligand	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-51848080-4	chr13	51847980	51848180	+	972.970215	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011817, exon 4 of 4)	3' UTR (NM_011817, exon 4 of 4)	1405.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-3386807-4	chr6	3386695	3386895	+	997.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010156, intron 1 of 1)	intron (NM_010156, intron 1 of 1)	12776.0	NM_010156	209086.0	Mm.196013	NM_010156	ENSMUSG00000047735	Samd9l	AA175286|ESTM25|mKIAA2005	sterile alpha motif domain containing 9-like	protein-coding	3.79712351596548	4.40091539008227	4.31624312212518	3.99244080615449	3.64333897011419	3.84255241710579	3.44446441358342	3.75451297326533	-0.654261617547377	0.153473766988237	0.608250910479476
Merged-chr3-53491903-2	chr3	53491803	53492003	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153156, intron 1 of 6)	B3|SINE|B2	3110.0	NM_153156	229277.0	Mm.222810	NM_153156	ENSMUSG00000027744	Stoml3	Epb7.2l|SLP3|sro	stomatin (Epb7.2)-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-40033451-1	chr8	40033351	40033551	+	564.5	f1_balb.idr	Intergenic	L1Md_F2|LINE|L1	253502.0	NM_030610	80857.0	Mm.425526	NM_030610	ENSMUSG00000031603	Fgf20	-	fibroblast growth factor 20	protein-coding	-0.491568229230377	-0.479053985398924	-0.301146592488407	-0.486314413176334	0.321037038386663	-0.478130661221216	-0.296537878854169	-0.485761758969446	2.68554180007236	0.291968648471148	1
Merged-chr1-118498496-4	chr1	118498407	118498607	+	961.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359330, intron 9 of 39)	intron (NM_001359330, intron 9 of 39)	-39242.0	NR_027901	68204.0	Mm.443536	NR_027901	ENSMUSG00000107722	2900060B14Rik	-	RIKEN cDNA 2900060B14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30280469-4	chr7	30280386	30280586	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146186)	promoter-TSS (NM_146186)	-65.0	NM_146186	233064.0	Mm.271677	NM_146186	ENSMUSG00000037020	Wdr62	2310038K02Rik|b2b1508Clo	WD repeat domain 62	protein-coding	5.99286299589126	6.45364833614294	6.30132937022823	6.35287319157751	6.4082865045753	6.41919375366166	6.9180684615832	6.16986752121942	0.241745978816186	0.280338492937692	0.783412873231201
Merged-chr13-11275270-2	chr13	11275170	11275370	+	595.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-246782.0	NR_027813	664793.0	Mm.410565	NR_027813	ENSMUSG00000113593	Zp4-ps	EG664793|Zp4|Zpb	zona pellucida glycoprotein 4, pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-135368389-4	chr1	135368276	135368476	+	994.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_053106)	TTS (NM_053106)	6687.0	NM_175259	77552.0	Mm.41407	NM_175259	ENSMUSG00000041889	Shisa4	9330132O05Rik|Tmem58|mShisa4	shisa family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-100674982-2	chr15	100674825	100675025	+	778.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_033612, intron 7 of 7)	intron (NM_033612, intron 7 of 7)	-5425.0	NM_001270537	668218.0	Mm.451225	NM_001270537	ENSMUSG00000098112	Bin2	-	bridging integrator 2	protein-coding	0.996501390864393	0.36948308333507	0.362273545047016	0.665016778293436	0.927668292788148	0.371106397985217	0.948180542862909	0.357675640704046	0.316148299753559	0.865161400042236	1
Merged-chr9-77858649-4	chr9	77858550	77858750	+	896.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB2|LINE|L1	-58715.0	NM_134255	68801.0	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-129916878-1	chr10	129916778	129916978	+	547.0	f1_balb.idr	Intergenic	L1_Mus4|LINE|L1	-4602.0	NM_146672	258667.0	Mm.377629	NM_146672	ENSMUSG00000063715	Olfr816	MOR113-1	olfactory receptor 816	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-84719304-1	chr17	84719204	84719404	+	570.75	f0_balb.idr	intron (NM_028233, intron 30 of 37)	intron (NM_028233, intron 30 of 37)	36183.0	NM_026180	67470.0	Mm.26581	NM_026180	ENSMUSG00000024254	Abcg8	1300003C16Rik|AI114946|sterolin-2	ATP binding cassette subfamily G member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-5951048-4	chr2	5950947	5951147	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081132)	promoter-TSS (NM_001081132)	-422.0	NM_001081132	326622.0	Mm.31102	NM_001081132	ENSMUSG00000043241	Upf2	-	UPF2 regulator of nonsense transcripts homolog (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-86170821-2	chr5	86170721	86170921	+	625.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172712, intron 1 of 32)	MTB|LTR|ERVL-MaLR	1922.0	NM_172712	231380.0	Mm.34012	NM_172712	ENSMUSG00000035898	Uba6	4930542H01|5730469D23Rik|AU021846|AW124799|E1-L2|Ube1l2	ubiquitin-like modifier activating enzyme 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-84060755-3	chr10	84060656	84060856	+	950.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152790, intron 2 of 4)	intron (NR_152790, intron 2 of 4)	39941.0	NR_152790	102637349.0	Mm.402869	NR_152790	ENSMUSG00000111049	Gm34184	-	predicted gene, 34184	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-9000540-4	chr3	9000438	9000638	+	857.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009412, intron 1 of 5)	RMER6A|LTR|ERVK	3666.0	NM_001357073	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-147063944-1	chr5	147063844	147064044	+	1000.0	f1_c57bl6.idr	intron (NM_080795, intron 1 of 9)	intron (NM_080795, intron 1 of 9)	12628.0	NM_080795	140887.0	Mm.272203	NM_080795	ENSMUSG00000016520	Lnx2	9630046H24|AW209022	ligand of numb-protein X 2	protein-coding	3.04545975597731	1.66116679492764	3.22070959606818	2.82502796383284	3.68897886299814	3.35942939435902	4.11850247919933	2.43546598018157	1.17161251048657	0.0993678796236772	0.490158564608197
Merged-chr7-43608192-4	chr7	43608100	43608300	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355131, intron 1 of 3)	intron (NM_001355131, intron 1 of 3)	1031.0	NM_028913	74400.0	Mm.159188	NM_028913	ENSMUSG00000055102	Zfp819	4930427I11Rik|4933405K07Rik	zinc finger protein 819	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64204188-4	chr5	64204151	64204351	+	887.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019636, intron 2 of 19)	intron (NM_019636, intron 2 of 19)	-26106.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-11858142-5	chr19	11858046	11858246	+	881.2000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2195.0	NM_001011524	258227.0	Mm.377385	NM_001011524	ENSMUSG00000060556	Olfr1418	MOR266-5	olfactory receptor 1418	protein-coding	2.71358311201229	1.4867131268392	2.54584150096458	1.87810518061258	2.81313407626674	2.37825343988254	3.38674459421522	2.79013013223728	1.27104028757523	0.123891542482778	0.551658122846446
Merged-chr6-122633017-2	chr6	122632917	122633117	+	690.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6593.0	NM_139218	73708.0	Mm.27982	NM_139218	ENSMUSG00000046323	Dppa3	2410075G02Rik|PCG7|PGC7|Stella	developmental pluripotency-associated 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-104849712-2	chr2	104849612	104849812	+	654.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_178695, exon 1 of 6)	5' UTR (NM_178695, exon 1 of 6)	138.0	NM_178695	228413.0	Mm.259609	NM_178695	ENSMUSG00000027171	Prrg4	9930111I18Rik|TMG4	proline rich Gla (G-carboxyglutamic acid) 4 (transmembrane)	protein-coding	0.427914167544735	1.59041748590179	0.466758659895209	0.452532338555563	0.656170754032828	2.14924975777521	0.470748666479657	1.07398344994918	1.40575622790246	0.385979523778182	0.876318810939384
Merged-chr3-9609151-3	chr3	9609060	9609260	+	764.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133218, intron 1 of 8)	CpG	925.0	NM_133218	170753.0	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-73716925-2	chr12	73716825	73717025	+	553.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008856, intron 9 of 13)	(TCTG)n|Simple_repeat|Simple_repeat	132129.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-106931918-2	chr13	106931818	106932018	+	565.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360897, intron 1 of 30)	B1_Mus1|SINE|Alu	5040.0	NM_001360897	76582.0	Mm.132208	NM_029665	ENSMUSG00000042590	Ipo11	1700081H05Rik|2510001A17Rik|AI314624|AW555235|E330021B14Rik|Ranbp11	importin 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-116669710-3	chr6	116669626	116669826	+	903.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178045, intron 1 of 10)	B4A|SINE|B4	4110.0	NM_178045	213391.0	Mm.257931	NM_178045	ENSMUSG00000042129	Rassf4	3830411C14Rik|AD037|AI586137	Ras association (RalGDS/AF-6) domain family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-137786304-4	chr5	137786187	137786387	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_144913, exon 1 of 4)	5' UTR (NM_144913, exon 1 of 4)	414.0	NM_144913	231803.0	Mm.61193	NM_144913	ENSMUSG00000029726	Mepce	Bcdin3|D5Wsu46e	methylphosphate capping enzyme	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91838005-2	chr16	91837905	91838105	+	887.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110275, intron 17 of 28)	intron (NM_001110275, intron 17 of 28)	93625.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-53571939-4	chr6	53571844	53572044	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001327821, intron 5 of 10)	intron (NM_001327821, intron 5 of 10)	-1430.0	NM_172728	231991.0	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	5.6308255424704	5.17230584775223	5.68454795535548	5.20000327392418	5.63019859729713	5.24538125916728	5.0898822336186	4.91005851304531	-0.224594211826575	0.455795458343377	0.919264728457769
Merged-chr18-77767814-4	chr18	77767692	77767892	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146089)	promoter-TSS (NM_146089)	7.0	NM_146089	225745.0	Mm.39293	NM_146089	ENSMUSG00000041840	Haus1	BC024400|Ccdc5|HEI-C	HAUS augmin-like complex, subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-166153579-4	chr1	166153451	166153651	+	738.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021610, intron 3 of 6)	intron (NM_021610, intron 3 of 6)	23330.0	NM_001360925	59290.0	Mm.46357	NM_021610	ENSMUSG00000000544	Gpa33	2010310L10Rik|2210401D16Rik|BB116197|mA33	glycoprotein A33 (transmembrane)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-3370159-3	chr5	3370039	3370239	+	729.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 2 of 7)	RLTR11D|LTR|ERVK	26246.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-116097430-2	chr3	116097331	116097531	+	594.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	32257.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	-0.180460043709739	-0.47131217391133	-0.476568698840391	-0.480656111171322	-0.486480978198429	-0.470133582346508	0.565537862236202	-0.479940014569958	2.24370388155188	0.396591400225246	1
Merged-chr8-83104218-4	chr8	83104158	83104358	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F1|SINE|Alu	-61094.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	5.54680450205792	5.85891847735942	5.8385329672463	5.91296468336075	5.58497705459739	5.86886982843708	5.87575360863302	5.93723506891369	0.0303396588069097	0.900565110071625	0.998431161219273
Merged-chr8-111822678-2	chr8	111822578	111822778	+	783.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011801, intron 5 of 6)	Lx2B2|LINE|L1	31632.0	NM_011801	23837.0	Mm.279437	NM_011801	ENSMUSG00000031954	Cfdp1	AA408409|Bcnt|Bucentaur|Cfdp|cp27	craniofacial development protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-18957547-1	chr7	18957447	18957647	+	543.0	f1_c57bl6.idr	exon (NM_001029877, exon 4 of 4)	exon (NM_001029877, exon 4 of 4)	-29977.0	NM_194064	378430.0	Mm.277153	NM_194064	ENSMUSG00000051965	Nanos2	nos2	nanos C2HC-type zinc finger 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-7213400-2	chr10	7213300	7213500	+	719.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1163.0	NM_172546	215748.0	Mm.37984	NM_172546	ENSMUSG00000015202	Cnksr3	6820402C05|BC024086|Magi1	Cnksr family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-114089833-2	chr6	114089733	114089933	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41408.0	NM_172890	243616.0	Mm.44683	NM_172890	ENSMUSG00000030307	Slc6a11	D930045G19Rik|E130202I16Rik|GAT4|Gabt4|Gat3	solute carrier family 6 (neurotransmitter transporter, GABA), member 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-98894135-3	chr15	98894054	98894254	+	960.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007857, exon 3 of 3)	exon (NM_007857, exon 3 of 3)	4386.0	NM_007857	13363.0	Mm.324688	NM_007857	ENSMUSG00000023000	Dhh	C78960	desert hedgehog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-72244447-1	chr1	72244347	72244547	+	1000.0	f0_balb.idr	intron (NR_155355, intron 1 of 3)	intron (NR_155355, intron 1 of 3)	454.0	NR_155355	320933.0	Mm.440953	NR_155355		D230017M19Rik	B930094L07Rik	RIKEN cDNA D230017M19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91852439-3	chr16	91852308	91852508	+	867.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110275, intron 21 of 28)	intron (NM_001110275, intron 21 of 28)	79222.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120323709-1	chr8	120323609	120323809	+	542.0	f1_c57bl6.idr	Intergenic	Intergenic	-95479.0	NR_110496	434353.0	Mm.411793	NR_110496	ENSMUSG00000097960	A330074K22Rik	-	RIKEN cDNA A330074K22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-52979856-3	chr2	52979768	52979968	+	751.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	B1_Mur2|SINE|Alu	122000.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-116130-1	chr1	116030	116230	+	910.0	f1_c57bl6.idr	Intergenic	Intergenic	3555368.0	NM_001011874	497097.0	Mm.454496	NM_001011874	ENSMUSG00000051951	Xkr4	AY534250|Gm210|XRG4|mKIAA1889	X-linked Kx blood group related 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-76018225-2	chr13	76018125	76018325	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_178916, exon 1 of 4)	5' UTR (NM_178916, exon 1 of 4)	337.0	NM_178916	218341.0	Mm.266515	NM_178916	ENSMUSG00000043190	Rfesd	AI256775|D030068K09	Rieske (Fe-S) domain containing	protein-coding	2.83120833612595	2.23274012335747	3.2841462206373	2.38882922373065	2.8547742066515	2.41873920231766	3.16965489141596	1.44726218572781	-0.244690995744364	0.769687454631431	0.998431161219273
Merged-chr13-23412544-3	chr13	23412458	23412658	+	710.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11308.0	NM_013924	30946.0	Mm.292094	NM_013924	ENSMUSG00000036376	Abt1	-	activator of basal transcription 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141453606-2	chr7	141453506	141453706	+	561.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1582.0	NM_025802	66853.0	Mm.29998	NM_025802	ENSMUSG00000025509	Pnpla2	0610039C21Rik|1110001C14Rik|Atgl|TTS-2.2	patatin-like phospholipase domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-136159803-2	chr4	136159703	136159903	+	718.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12471.0	NM_177733	242705.0	Mm.307932	NM_177733	ENSMUSG00000018983	E2f2	E2F-2	E2F transcription factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-64248596-4	chr13	64248493	64248693	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045798)	promoter-TSS (NR_045798)	-55.0	NM_001122989	218294.0	Mm.25335	NM_172587	ENSMUSG00000033102	Cdc14b	2810432N10Rik|A530086E13Rik|AA472821|CDC14B3|Cdc14B1	CDC14 cell division cycle 14B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-36157918-4	chr12	36157827	36158027	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146033, intron 1 of 9)	intron (NM_146033, intron 1 of 9)	803.0	NM_146033	217473.0	Mm.130422	NM_146033	ENSMUSG00000036188	Ankmy2	AI035571|ZMYND20	ankyrin repeat and MYND domain containing 2	protein-coding	2.00728373227495	0.847265125669463	1.04852914425761	1.46338720474239	1.7592058031254	0.850718716537781	1.05567015475231	1.34446311046908	-0.441551413190173	0.743541910917248	0.998431161219273
Merged-chr2-126933178-4	chr2	126933074	126933274	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023220)	promoter-TSS (NM_023220)	61.0	NM_023220	66552.0	Mm.269928	NM_023220	ENSMUSG00000027366	Sppl2a	2010106G01Rik|C130089K23Rik	signal peptide peptidase like 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44836103-4	chr7	44835979	44836179	+	907.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010215)	promoter-TSS (NM_010215)	-209.0	NM_010215	14204.0	Mm.2565	NM_010215	ENSMUSG00000074141	Il4i1	Fig1|Fig1-ps|LAAO|LAO	interleukin 4 induced 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-90013473-4	chr9	90013376	90013576	+	822.55835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357743, intron 23 of 26)	intron (NM_001357743, intron 23 of 26)	-40791.0	NM_007801	13036.0	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-14244839-4	chr2	14244732	14244932	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008625, intron 3 of 29)	intron (NM_008625, intron 3 of 29)	15418.0	NM_008625	17533.0	Mm.2019	NM_008625	ENSMUSG00000026712	Mrc1	AW259686|CD206|MR	mannose receptor, C type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-31871000-4	chr5	31870916	31871116	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144541, intron 6 of 11)	MTEa|LTR|ERVL-MaLR	172966.0	NM_144541	107976.0	Mm.482126	NM_144541	ENSMUSG00000052139	Babam2	6030405P19Rik|AI429776|B830038C02Rik|Bre	BRISC and BRCA1 A complex member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-119072182-2	chr9	119072082	119072282	+	578.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001164567)	TTS (NM_001164567)	16079.0	NM_001293648	18799.0	Mm.23963	NM_019676	ENSMUSG00000010660	Plcd1	AW212592|C79986	phospholipase C, delta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-34332918-4	chr13	34332840	34333040	+	943.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033167, intron 1 of 10)	intron (NM_001033167, intron 1 of 10)	12242.0	NM_001033167	73102.0	Mm.23932	NM_001033167	ENSMUSG00000038267	Slc22a23	3110004L20Rik	solute carrier family 22, member 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124484269-3	chr5	124484225	124484425	+	731.761902	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029532, intron 1 of 1)	intron (NM_029532, intron 1 of 1)	1170.0	NM_029532	76167.0	Mm.156035	NM_029532	ENSMUSG00000029402	Snrnp35	6330548G22Rik	small nuclear ribonucleoprotein 35 (U11/U12)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-66713577-2	chr17	66713468	66713668	+	917.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_151453)	promoter-TSS (NR_151453)	-888.0	NR_151453	102639882.0	Mm.443262	NR_151453		1700016K05Rik	-	RIKEN cDNA 1700016K05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-80080621-4	chr2	80080534	80080734	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355141, intron 2 of 15)	intron (NM_001355141, intron 2 of 15)	-41732.0	NM_001355142	18573.0	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-47028701-1	chr7	47028601	47028801	+	548.0	f1_balb.idr	Intergenic	MLT1F|LTR|ERVL-MaLR	-20287.0	NM_175318	101685.0	Mm.155687	NM_175318	ENSMUSG00000049516	Spty2d1	5830435K17Rik|AI852426|P16H6	SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-8617971-2	chr3	8617871	8618071	+	552.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-10080.0	NR_153352	102635065.0		NR_153352	ENSMUSG00000104102	Gm32496	-	predicted gene, 32496	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-60855716-2	chr2	60855616	60855816	+	744.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_020296, intron 1 of 13)	ID4|SINE|ID	25722.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-36632531-2	chr12	36632423	36632623	+	716.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289503, intron 9 of 9)	ORR1F|LTR|ERVL-MaLR	-183682.0	NR_039558	100628578.0		NR_039558	ENSMUSG00000092998	Mir5099	mmu-mir-5099|mu-mir-5099	microRNA 5099	ncRNA	1.07689919435019	1.22157936930407	1.17535421180985	1.24980230981935	1.1884859576848	1.08825741608654	0.707751989070784	0.699390801832102	-1.15748469626454	0.419271921047106	0.899253576818587
Merged-chr13-67772495-3	chr13	67772393	67772593	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7200.0	NM_028402	72958.0	Mm.53849	NM_028402	ENSMUSG00000090659	Zfp493	2900054J07Rik|Rslcan12	zinc finger protein 493	protein-coding	4.35701454114375	4.83727226224828	5.33790965093158	4.49378803984304	3.06719381733667	3.11251989108059	2.48526746809107	1.92859328291706	-2.93259129357907	5.00514022901237e-08	4.94931366491954e-06
Merged-chr7-99536260-5	chr7	99536146	99536346	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178220, intron 1 of 14)	intron (NM_178220, intron 1 of 14)	760.0	NM_177231	109689.0	Mm.260193	NM_177231	ENSMUSG00000018909	Arrb1	1200006I17Rik|AW208571|G430100A01Rik	arrestin, beta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-58381777-2	chr1	58381677	58381877	+	773.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-11359.0	NM_025824	66882.0	Mm.21848	NM_025824	ENSMUSG00000051223	Bzw1	1200015E15Rik|mKIAA0005	basic leucine zipper and W2 domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-36449482-4	chr3	36449397	36449597	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009673, intron 12 of 12)	intron (NM_009673, intron 12 of 12)	26027.0	NR_105976	102466786.0		NR_105976	ENSMUSG00000098808	Mir7009	Gm27472|mmu-mir-7009	microRNA 7009	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-60757456-4	chr14	60757344	60757544	+	982.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033272, intron 11 of 12)	intron (NM_001033272, intron 11 of 12)	-10690.0	NM_183175	239126.0	Mm.319636	NM_183175	ENSMUSG00000071347	C1qtnf9	9130217G22Rik|CTRP9|Ciqtnf9	C1q and tumor necrosis factor related protein 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-72752211-4	chr11	72752108	72752308	+	981.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009671, exon 15 of 25)	exon (NM_009671, exon 15 of 25)	43631.0	NM_001024926	192986.0	Mm.194755	NM_001024926	ENSMUSG00000057778	Cyb5d2	9330151E16Rik|Gm2	cytochrome b5 domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-64210655-2	chr15	64210555	64210755	+	572.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 3 of 28)	intron (NM_001276461, intron 3 of 28)	102018.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70837158-2	chr8	70837058	70837258	+	922.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_027560, exon 5 of 8)	exon (NM_027560, exon 5 of 8)	2562.0	NM_027560	70807.0	Mm.24215	NM_027560	ENSMUSG00000002910	Arrdc2	4632416I05Rik|Ilad1	arrestin domain containing 2	protein-coding	1.25972421364706	2.20532578299022	0.927508476343267	0.910129464526725	2.03070424062683	1.89830136869806	1.94106286196454	0.913201824250436	0.881764301887781	0.501436232935722	0.938443375140454
Merged-chr14-103045566-1	chr14	103045466	103045666	+	593.0	f0_c57.idr	Intergenic	Intergenic	-1446.0	NM_008392	16365.0	Mm.4662	NM_008392	ENSMUSG00000022126	Acod1	AI323667|CAD|Irg1	aconitate decarboxylase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100546445-2	chr11	100546345	100546545	+	648.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_028918, intron 1 of 11)	B3|SINE|B2	813.0	NM_028918	74407.0	Mm.31590	NM_028918	ENSMUSG00000006784	Ttc25	4933404O19Rik	tetratricopeptide repeat domain 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-61665215-4	chr8	61665183	61665383	+	879.5125119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293772, intron 10 of 21)	intron (NM_001293772, intron 10 of 21)	-74114.0	NM_001293774	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-8669508-2	chr8	8669408	8669608	+	579.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_176849, intron 3 of 3)	intron (NM_176849, intron 3 of 3)	-8735.0	NM_010111	13642.0	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-93816538-2	chr1	93816438	93816638	+	665.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025454, intron 6 of 7)	intron (NM_025454, intron 6 of 7)	-8702.0	NM_178882	98314.0	Mm.383401	NM_178882	ENSMUSG00000073609	D2hgdh	AA408776|AA408778|AI325464	D-2-hydroxyglutarate dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71263323-4	chr17	71263262	71263462	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357338, intron 4 of 7)	intron (NM_001357338, intron 4 of 7)	47649.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	3.0009234629761	1.55209609026122	1.49819445822454	2.91220363443816	2.95017528535223	3.61139604959699	3.42826641941007	3.1028098304373	1.49723641549552	0.0611210325137941	0.366182991400933
Merged-chr9-113795471-3	chr9	113795373	113795573	+	760.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286603, intron 1 of 4)	intron (NM_001286603, intron 1 of 4)	2143.0	NM_001286603	76499.0	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	2.60990110893423	2.61421395204198	2.99041087810685	2.83133390621156	2.35067453607083	2.5069558698914	1.47925812094702	2.35047160560753	-1.15330496947601	0.152303599571178	0.605910723135302
Merged-chr5-123749563-4	chr5	123749464	123749664	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001042421)	promoter-TSS (NM_001042421)	-150.0	NM_001359865	208606.0	Mm.276341	NM_025438	ENSMUSG00000029422	Rsrc2	1500011J06Rik	arginine/serine-rich coiled-coil 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45721411-2	chr7	45721299	45721499	+	701.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_009077)	TTS (NM_009077)	179.0	NM_001033170	73813.0	Mm.322591	NM_001033170	ENSMUSG00000054161	Fam83e	4930403C10Rik	family with sequence similarity 83, member E	protein-coding	1.21256062435161	1.4450931629786	0.388440072322771	0.379902154318604	1.14291935808751	0.401765698558667	0.390859294915959	0.38140232123617	-1.44381573868919	0.442796252266416	0.911647291190116
Merged-chr8-34148296-2	chr8	34148211	34148411	+	629.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1572.0	NM_026609	68192.0	Mm.34212	NM_026609	ENSMUSG00000031513	Leprotl1	1110067H13Rik|1520402O14Rik|AI854296	leptin receptor overlapping transcript-like 1	protein-coding	0.350783450397489	-0.159300946747676	0.140573161969891	-0.166611908603194	-0.171079170385175	0.0253314673368139	0.147509503069761	-0.166057946722597	-0.891762055325251	0.693554138285292	1
Merged-chr4-16112658-4	chr4	16112547	16112747	+	996.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50996.0	NM_138952	192656.0	Mm.112765	NM_138952	ENSMUSG00000041135	Ripk2	2210420D18Rik|CARD3|CARDIAK|CCK|D4Bwg0615e|RICK|RIP2	receptor (TNFRSF)-interacting serine-threonine kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-95688285-3	chr9	95688178	95688378	+	825.866638	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029620, intron 6 of 8)	intron (NM_029620, intron 6 of 8)	50650.0	NM_029620	76477.0	Mm.46016	NM_029620	ENSMUSG00000015354	Pcolce2	2400001O18Rik|Pcpe2	procollagen C-endopeptidase enhancer 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-107313256-2	chr11	107313156	107313356	+	797.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 4 of 9)	intron (NR_153311, intron 4 of 9)	-123875.0	NM_001161329	68979.0	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-23156014-4	chr2	23155908	23156108	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025979)	promoter-TSS (NM_025979)	16.0	NM_025979	67121.0	Mm.253721	NM_025979	ENSMUSG00000026779	Mastl	2700091H24Rik|C88295|GW|GWL|MAST-L|THC2	microtubule associated serine/threonine kinase-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6058913-2	chr19	6058818	6059018	+	791.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_007990, intron 3 of 4)	intron (NM_007990, intron 3 of 4)	951.0	NM_001190436	14109.0	Mm.329631	NM_007990	ENSMUSG00000038274	Fau	MNSFbeta	Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed (fox derived)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-142024824-2	chr4	142024724	142024924	+	774.333374	f1_balb.idr|f1_c57bl6.idr	intron (NR_131014, intron 1 of 1)	intron (NR_131014, intron 1 of 1)	6926.0	NR_131014	78917.0	Mm.139995	NR_131014	ENSMUSG00000085761	4930455G09Rik	-	RIKEN cDNA 4930455G09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-94834955-4	chr17	94834832	94835032	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045963)	promoter-TSS (NR_045963)	-133.0	NR_045963	100038746.0	Mm.456686	NR_045963	ENSMUSG00000066057	Gm1976	100038868	predicted gene 1976	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-20305670-2	chr3	20305570	20305770	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	-29937.0	NM_029706	76703.0	Mm.34692	NM_029706	ENSMUSG00000011463	Cpb1	0910001A18Rik|1810063F02Rik|2210008M23Rik|AI504870	carboxypeptidase B1 (tissue)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-90634033-2	chr15	90633936	90634136	+	731.75	f0_balb.idr|f1_balb.idr	intron (NM_001357979, intron 3 of 18)	MTA_Mm|LTR|ERVL-MaLR	45352.0	NM_025815	66871.0	Mm.290991	NM_025815	ENSMUSG00000052560	Cpne8	1200003E11Rik|1500031E20Rik	copine VIII	protein-coding	1.98950705365589	1.30684513904736	1.25672096190348	1.21558686316417	3.38593437438502	3.44122941651668	3.1853920319674	3.08311476520871	4.07386017511909	3.37844364858288e-05	0.00127734979713332
Merged-chr3-103017592-4	chr3	103017543	103017743	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2903.0	NM_001310693	229663.0	Mm.277713	NM_144901	ENSMUSG00000068823	Csde1	AA960392|BC016898|D3Jfr1|mKIAA0885|unr	cold shock domain containing E1, RNA binding	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-137828890-4	chr5	137828795	137828995	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153510, intron 3 of 6)	intron (NM_153510, intron 3 of 6)	7383.0	NM_153510	231805.0	Mm.379385	NM_153510	ENSMUSG00000046245	Pilra	AV021745|FDF03	paired immunoglobin-like type 2 receptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-117936747-3	chr2	117936629	117936829	+	758.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_126479, intron 8 of 9)	intron (NR_126479, intron 8 of 9)	114801.0	NR_040631	73938.0	Mm.399107	NR_040631	ENSMUSG00000086221	4930412B13Rik	-	RIKEN cDNA 4930412B13 gene	ncRNA	0.0510272900683911	0.0813771938823182	0.0716434557837793	0.0639980494279442	1.24032243579817	0.0835450638439503	0.0738069905177303	1.13392537902624	4.53555350085084	0.0314867500875453	1
Merged-chr3-55349535-2	chr3	55349435	55349635	+	951.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357475, intron 3 of 16)	intron (NM_001357475, intron 3 of 16)	107171.0	NM_001357466	13175.0	Mm.393242	NM_019978	ENSMUSG00000027797	Dclk1	1700113D08Rik|2810480F11Rik|AI836758|Click-I|Cpg16|Dcamkl1|Dcl|Dclk|mKIAA0369	doublecortin-like kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139555944-4	chr5	139555803	139556003	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12005.0	NM_013702	22255.0	Mm.42190	NM_013702	ENSMUSG00000029546	Uncx	Chx4|Uncx4.1	UNC homeobox	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-32663295-2	chr19	32663195	32663395	+	894.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_011864, exon 11 of 13)	exon (NM_011864, exon 11 of 13)	43290.0	NM_011864	23972.0	Mm.203916	NM_011864	ENSMUSG00000024899	Papss2	1810018P12Rik|AI159688|AtpsU2|Atpsk2|Sk2|bm	3'-phosphoadenosine 5'-phosphosulfate synthase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-126437281-2	chr4	126437181	126437381	+	743.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001317173, exon 19 of 19)	3' UTR (NM_001317173, exon 19 of 19)	-7739.0	NM_153402	214150.0	Mm.440915	NM_153402	ENSMUSG00000028842	Ago3	AW048688|C130014L07Rik|Eif2c3	argonaute RISC catalytic subunit 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-88551178-4	chr17	88551089	88551289	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028658, intron 7 of 21)	intron (NM_028658, intron 7 of 21)	21065.0	NM_028658	73825.0	Mm.271817	NM_028658	ENSMUSG00000034709	Ppp1r21	1110018J12Rik|AI426045|AW550781|Ccdc128|Klraq1	protein phosphatase 1, regulatory subunit 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80749654-2	chr10	80749656	80749856	+	933.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-5447.0	NM_199322	208266.0	Mm.152371	NM_199322	ENSMUSG00000061589	Dot1l	A630076O07|AW907654|Dot1|KMT4|mDot1	DOT1-like, histone H3 methyltransferase (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-53768445-2	chr11	53768345	53768545	+	709.400024	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1569.0	NM_001159393	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-117340887-2	chr2	117340787	117340987	+	927.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011246, intron 1 of 16)	intron (NM_011246, intron 1 of 16)	1990.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-95702010-2	chr8	95701910	95702110	+	569.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1027.0	NM_001195006	234593.0	Mm.29846	NM_145602	ENSMUSG00000036564	Ndrg4	D8Bwg1337e|Ndr1-rs|Ndr4|R74996|SMAP-8	N-myc downstream regulated gene 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95296721-2	chr3	95296621	95296821	+	927.166626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_199475)	TTS (NM_199475)	10083.0	NM_001085383	71790.0	Mm.218844	NM_023628	ENSMUSG00000015702	Anxa9	1110003P15Rik|2310069F17Rik	annexin A9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-120850570-4	chr2	120850458	120850658	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_038349)	promoter-TSS (NR_038349)	26.0	NM_080788	140810.0	Mm.275698	NM_080788	ENSMUSG00000090100	Ttbk2	2610507N02Rik|AI326283|B930008N24Rik|TTK|Ttbk|Ttbk1|mKIAA0847	tau tubulin kinase 2	protein-coding	4.176532153928	4.02316664083072	4.29281898161903	3.60724101977907	4.90396180211815	4.9115517977066	4.63543055385592	4.75352102811355	0.969668348257664	0.0112750289330119	0.118318773007239
Merged-chr2-167102920-2	chr2	167102820	167103020	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008420, exon 2 of 2)	3' UTR (NM_008420, exon 2 of 2)	37627.0	NR_028540	100217443.0		NR_028540		Snord12	MBII-99	small nucleolar RNA, C/D box 12	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-152315833-4	chr3	152315691	152315891	+	997.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162375, intron 7 of 13)	intron (NM_001162375, intron 7 of 13)	24616.0	NM_174868	215708.0	Mm.135018	NM_174868	ENSMUSG00000054942	Miga1	A930038D06|AI852168|C030011O14Rik|Fam73a|Mita1	mitoguardin 1	protein-coding	5.23187336867746	4.44904882622004	4.97204598813431	5.39013054379091	4.79800804397628	5.03818912767357	4.13519929512677	4.32232440657719	-0.537942936132316	0.145569281943457	0.596088820736383
Merged-chr9-40787043-1	chr9	40786943	40787143	+	678.0	f1_balb.idr	Intergenic	B3|SINE|B2	-14230.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	0.90585741550137	0.760802279058196	0.742494717813216	0.95433933694584	1.97265475884778	1.41294832900615	0.990333247195906	2.16218438848225	3.7251348210363	0.0112898175946633	0.118335962289549
Merged-chr15-73732915-8	chr15	73732853	73733053	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166388, intron 1 of 5)	UCON5|Unknown|Unknown	8023.0	NM_001166388	19245.0	Mm.390807	NM_008975	ENSMUSG00000059895	Ptp4a3	AV088979|Prl-3|pPtp4a3	protein tyrosine phosphatase 4a3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45136467-4	chr7	45136365	45136565	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013520)	promoter-TSS (NM_013520)	-33.0	NR_102725	14256.0	Mm.1658	NM_013520	ENSMUSG00000110206	Flt3l	Flt3lg|Ly72L	FMS-like tyrosine kinase 3 ligand	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-112402021-3	chr2	112401912	112402112	+	786.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024254, intron 1 of 9)	HAL1|LINE|L1	22801.0	NM_024254	72425.0	Mm.425091	NM_024254	ENSMUSG00000027132	Katnbl1	2410042D21Rik|AA166487|AA473307|AI467442	katanin p80 subunit B like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-102207180-2	chr7	102207119	102207319	+	686.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_001287166, intron 1 of 19)	intron (NM_001287166, intron 1 of 19)	2648.0	NM_001287167	269966.0	Mm.439800	NM_022979	ENSMUSG00000063550	Nup98	4732457F17|AI849286|Nup96	nucleoporin 98	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-73301907-2	chr17	73301807	73302007	+	758.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	97389.0	NM_001033444	381122.0	Mm.81496	NM_001033444	ENSMUSG00000043705	Capn13	CANP 13|Gm943	calpain 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-67836435-4	chr5	67836323	67836523	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038999, intron 1 of 36)	intron (NM_001038999, intron 1 of 36)	11008.0	NM_009727	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-38478013-2	chr15	38477913	38478113	+	729.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15-int|LTR|ERVL	12534.0	NR_105916	102465574.0		NR_105916	ENSMUSG00000099110	Mir6951	Gm27765|mmu-mir-6951	microRNA 6951	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-146120170-3	chr3	146120111	146120311	+	734.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1580.0	NM_134160	171166.0	Mm.114683	NM_134160	ENSMUSG00000036853	Mcoln3	6720490O21Rik|TRPML3|Va	mucolipin 3	protein-coding	2.21008745252648	1.7668181278774	1.23459743712068	2.68002812322127	2.32204482124882	1.27459009930977	2.05814002221356	2.95628681528915	0.463779587466517	0.657313205861416	0.988704682801132
Merged-chr15-100176478-2	chr15	100176378	100176578	+	622.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172819, intron 14 of 32)	intron (NM_172819, intron 14 of 32)	11558.0	NR_037311	100499528.0		NR_037311	ENSMUSG00000092752	Mir3473a	Mir3473|mir-3473a|mmu-mir-3473|mmu-mir-3473a	microRNA 3473a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-28025714-2	chr3	28025614	28025814	+	607.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008875, intron 3 of 25)	B4A|SINE|B4	41543.0	NM_008875	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-126108860-2	chr4	126108760	126108960	+	562.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028800, intron 1 of 10)	MIRb|SINE|MIR	4903.0	NM_001145827	74178.0	Mm.440269	NM_028800	ENSMUSG00000042608	Stk40	2310004N11Rik|AI428792	serine/threonine kinase 40	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-8315047-2	chr12	8314947	8315147	+	593.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021429, intron 1 of 6)	intron (NM_021429, intron 1 of 6)	1614.0	NM_021429	58240.0	Mm.309954	NM_021429	ENSMUSG00000020605	Hs1bp3	-	HCLS1 binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-40745996-1	chr3	40745896	40746096	+	1000.0	f0_c57.idr	intron (NM_011020, intron 1 of 18)	intron (NM_011020, intron 1 of 18)	383.0	NM_011020	18415.0	Mm.39330	NM_011020	ENSMUSG00000025757	Hspa4l	94kDa|AI461691|APG-1|Osp94	heat shock protein 4 like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-43689290-3	chr10	43689199	43689399	+	766.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56859.0	NR_040581	69443.0	Mm.484042	NR_040581	ENSMUSG00000111422	1700027J07Rik	-	RIKEN cDNA 1700027J07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-123009075-4	chr8	123008990	123009190	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 1 of 12)	intron (NM_001081379, intron 1 of 12)	33194.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152427571-2	chr1	152427471	152427671	+	547.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177756, intron 1 of 11)	intron (NM_177756, intron 1 of 11)	27704.0	NM_177756	269132.0	Mm.23782	NM_177756	ENSMUSG00000032649	Colgalt2	AI427652|D730024P12|Glt25d2	collagen beta(1-O)galactosyltransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-45036785-4	chr14	45036698	45036898	+	946.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE-int|LTR|ERVL-MaLR	48687.0	NM_008964	19217.0	Mm.4630	NM_008964	ENSMUSG00000037759	Ptger2	EP2|Ptgerep2	prostaglandin E receptor 2 (subtype EP2)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-134551828-3	chr4	134551749	134551949	+	797.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029100, intron 1 of 11)	intron (NM_029100, intron 1 of 11)	317.0	NM_029100	74777.0	Mm.29773	NM_029100	ENSMUSG00000050989	Selenon	1110019I12Rik|AI414492|SelN|Sepn1	selenoprotein N	protein-coding	-1.06997269762433	-1.30473905204845	-1.3145270772132	-1.32256725251374	-1.06385251204029	-1.30261794616352	-1.3123112828633	-1.32112806497905	0.0394047164033882	0.991001358494878	1
Merged-chr8-26907698-4	chr8	26907541	26907741	+	964.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69695.0	NM_001101502	353310.0	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-192943763-1	chr1	192943663	192943863	+	664.0	f1_c57bl6.idr	intron (NM_001301370, intron 4 of 8)	MTD|LTR|ERVL-MaLR	-88011.0	NM_198247	214791.0	Mm.22806	NM_198247	ENSMUSG00000016262	Sertad4	4833404A09|C130018M11Rik	SERTA domain containing 4	protein-coding	1.79469967122097	2.36661421604259	1.05417947007374	2.29441768792367	1.91796140809155	2.28567096960868	1.05996380042618	1.03717758907893	-0.720185910428001	0.555434893566324	0.959969440076167
Merged-chr4-133451744-4	chr4	133451654	133451854	+	793.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28379.0	NM_175307	100342.0	Mm.204656	NM_175307	ENSMUSG00000046694	Fam46b	4732473B16Rik|AU045678|AU046069	family with sequence similarity 46, member B	protein-coding	3.4730051240775	4.00038634683284	2.7364219143278	3.82674918169022	3.23006854127114	3.12754378160121	1.99426233677101	3.67203689863202	-0.701935046943156	0.27738775468783	0.781366007374687
Merged-chr9-50560708-4	chr9	50560579	50560779	+	990.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025687, intron 1 of 4)	intron (NM_025687, intron 1 of 4)	589.0	NM_025687	66654.0	Mm.442255	NM_025687	ENSMUSG00000032065	Tex12	5730518K06Rik	testis expressed gene 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-151039402-4	chr2	151039291	151039491	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026086)	promoter-TSS (NM_026086)	-12.0	NM_026086	67311.0	Mm.480682	NM_026086	ENSMUSG00000053916	Nanp	1600031M04Rik|Hdhd4	N-acetylneuraminic acid phosphatase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-160361319-2	chr2	160361219	160361419	+	927.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5746.0	NM_010658	16658.0	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-131489034-2	chr2	131488934	131489134	+	722.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2828.0	NM_001177834	228608.0	Mm.136586	NM_145533	ENSMUSG00000027333	Smox	B130066H01Rik|PAO|PAOh1|SMO	spermine oxidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-31253585-3	chr9	31253527	31253727	+	824.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17774.0	NM_001101597	638580.0	Mm.373655	NM_001101597		Gm7244	EG638580	predicted gene 7244	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-90475348-2	chr3	90475156	90475356	+	995.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026374)	promoter-TSS (NM_026374)	-945.0	NM_026374	67781.0	Mm.227258	NM_026374	ENSMUSG00000001016	Ilf2	6230405A16Rik|TEG-267|Tex261|Tex267	interleukin enhancer binding factor 2	protein-coding	-0.244143006491071	-0.227052755812133	-0.232618508539295	-0.236934460873941	-0.243067146199752	-0.225802451187353	0.499312563664644	0.54136969900076	3.95316377684175	0.106751581310435	1
Merged-chr8-8198638-3	chr8	8198532	8198732	+	836.722229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	462141.0	NM_010111	13642.0	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117873441-3	chr10	117873392	117873592	+	849.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27518.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	0.40509536159805	0.777471887991172	0.615679752588254	0.0206705020139664	0.013964839049158	0.0328799863704936	0.0267474399032842	0.0214974647029314	-4.06758822476349	0.0576076816575975	1
Merged-chr7-83653390-3	chr7	83653303	83653503	+	742.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360088, intron 13 of 18)	intron (NM_001360088, intron 13 of 18)	2092.0	NM_001360089	16170.0	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	2.11729390984853	2.86102169413476	2.76548978385695	2.68822630923418	1.63467568152735	2.88192895163269	2.31220479380674	2.87641401660571	-0.229303861270909	0.776616589981887	0.998431161219273
Merged-chr8-122848300-2	chr8	122848200	122848400	+	616.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007662)	promoter-TSS (NM_007662)	-74.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-52260139-1	chr6	52260039	52260239	+	540.0	f1_c57bl6.idr	exon (NM_008264, exon 3 of 4)	exon (NM_008264, exon 3 of 4)	741.0	NM_008264	15398.0	Mm.377086	NM_008264		Hoxa13	Hd|Hox-1.10	homeobox A13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71614442-1	chr8	71614342	71614542	+	919.0	f1_balb.idr	intron (NM_146211, intron 3 of 11)	intron (NM_146211, intron 3 of 11)	3418.0	NM_146211	234407.0	Mm.240885	NM_146211	ENSMUSG00000034807	Colgalt1	2810024B22Rik|Glt25d1	collagen beta(1-O)galactosyltransferase 1	protein-coding	0.942394223000042	2.31026018573857	0.583333755729672	0.568000799024332	1.36440602466999	1.5970464793869	0.587632759966979	0.570713498720474	-0.732099305294163	0.637783705176569	0.982553787199342
Merged-chr11-72042401-4	chr11	72042311	72042511	+	890.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144526)	promoter-TSS (NM_144526)	-91.0	NM_144526	109212.0	Mm.33118	NM_144526	ENSMUSG00000020808	Pimreg	2610008F03Rik|6720460F02Rik|AI115087|CATS|Fam64a	PICALM interacting mitotic regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127266292-4	chr10	127266191	127266391	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001190454)	promoter-TSS (NM_001190454)	29.0	NM_001190453	69654.0	Mm.167537	NM_027151	ENSMUSG00000025410	Dctn2	2310042E05Rik|C130077D06Rik|C87049|DCTN-50|GMP23-48K|RBP50|p50	dynactin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134049116-4	chr6	134049012	134049212	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007961, intron 1 of 7)	MTD|LTR|ERVL-MaLR	13412.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	2.31990870800482	1.4263015120753	2.01252109083748	2.70239355669729	2.13390644049521	2.50912282664149	2.53271568450627	2.45562296503435	0.466881340682562	0.597760290109416	0.971981563164
Merged-chr10-61474484-4	chr10	61474387	61474587	+	790.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-1346.0	NM_153542	216011.0	Mm.136116	NM_153542	ENSMUSG00000037151	Lrrc20	BC036304	leucine rich repeat containing 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-102655564-4	chr4	102655451	102655651	+	887.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	65708.0	NM_001177981	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	2.98697906044696	3.92435476075913	2.91024951730166	2.94368975941042	2.69071266726884	4.28719322669168	3.54262636448124	3.65067995179191	0.602710839682503	0.325921955705364	0.828009237271235
Merged-chr9-88725487-2	chr9	88725387	88725587	+	909.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_007536, intron 1 of 1)	intron (NM_007536, intron 1 of 1)	-5689.0	NM_001128601	100039707.0	Mm.347377	NM_001128601	ENSMUSG00000079427	Mthfsl	Gm2382	5, 10-methenyltetrahydrofolate synthetase-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-32319454-4	chr17	32319351	32319551	+	919.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357760, intron 1 of 11)	intron (NM_001357760, intron 1 of 11)	1787.0	NM_001357760	56399.0	Mm.328945	NM_019774	ENSMUSG00000024045	Akap8	1200016A02Rik|AA673585|AKAP-8|AKAP95|AU015639	A kinase (PRKA) anchor protein 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-87499107-8	chr3	87499022	87499222	+	958.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113238, intron 11 of 11)	intron (NM_001113238, intron 11 of 11)	-26456.0	NM_001083318	27049.0	Mm.219460	NM_012051	ENSMUSG00000003382	Etv3	AI414410|METS|Pe1	ets variant 3	protein-coding	3.40917883617348	2.29018291185424	3.94856199287264	3.6985308393569	2.58501384513552	1.52248585696196	3.39209086920559	1.40997424693789	-1.62337808866936	0.0536662995844945	0.339245659860255
Merged-chr11-119055523-2	chr11	119055423	119055623	+	739.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14610.0	NM_013926	30951.0	Mm.99953	NM_013926	ENSMUSG00000025578	Cbx8	Pc3	chromobox 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125471222-2	chr6	125471122	125471322	+	808.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007657, intron 2 of 7)	intron (NM_007657, intron 2 of 7)	23538.0	NM_007657	12527.0	Mm.210676	NM_007657	ENSMUSG00000030342	Cd9	Tspan29	CD9 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-138142029-2	chr6	138141929	138142129	+	610.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347489, intron 1 of 3)	intron (NM_001347489, intron 1 of 3)	442.0	NM_001361309	56615.0	Mm.14796	NM_019946	ENSMUSG00000008540	Mgst1	1500002K10Rik|Gst	microsomal glutathione S-transferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-127349194-2	chr3	127349006	127349206	+	809.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001327939, intron 1 of 45)	L2a|LINE|L2	59952.0	NM_001327939	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	1.03342269688849	0.246680401728906	0.825785020838572	0.234294181018442	0.623988813767402	0.451858004407643	0.241241652512782	0.235239771049151	-1.50883658805052	0.438573017511229	1
Merged-chr5-8356516-3	chr5	8356419	8356619	+	606.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001007220, intron 2 of 28)	intron (NM_001007220, intron 2 of 28)	11641.0	NM_001007221	11496.0	Mm.275895	NM_001007220	ENSMUSG00000040537	Adam22	2900022I03Rik|AI854032|MDC2	a disintegrin and metallopeptidase domain 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-110611630-1	chr12	110611530	110611730	+	934.0	f1_c57bl6.idr	intron (NM_030238, intron 1 of 76)	B2_Mm1a|SINE|B2	10235.0	NM_030238	13424.0	Mm.181430	NM_030238	ENSMUSG00000018707	Dync1h1	9930018I23Rik|AI894280|DHC1|DHC1a|DNCL|Dnchc1|Dnec1|Dnecl|Loa|MAP1C|P22|Swl|mKIAA0325	dynein cytoplasmic 1 heavy chain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180329197-2	chr1	180329097	180329297	+	660.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_003623, exon 1 of 1)	non-coding (NR_003623, exon 1 of 1)	-1279.0	NM_001081175	320404.0	Mm.132535	NM_001081175	ENSMUSG00000038855	Itpkb	1110033J02Rik|E130307H12Rik	inositol 1,4,5-trisphosphate 3-kinase B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-87696996-2	chr16	87696896	87697096	+	554.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-1958.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	1.26680249394388	0.738429724148481	0.938218894420609	1.7329039269058	1.27918256632382	0.741519910184335	0.727640591266504	1.74395021973041	-0.0975177538932302	0.947441395736216	0.998431161219273
Merged-chr4-156210964-2	chr4	156210864	156211064	+	948.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-4963.0	NM_172417	74183.0	Mm.431343	NM_172417	ENSMUSG00000078486	Perm1	2310042D19Rik	PPARGC1 and ESRR induced regulator, muscle 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-59585006-4	chr9	59584892	59585092	+	943.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175235, intron 2 of 11)	intron (NM_175235, intron 2 of 11)	-4296.0	NM_001361099	76183.0	Mm.265415	NM_175235	ENSMUSG00000032297	Celf6	6330569O16Rik|Brunol6	CUGBP, Elav-like family member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-145824024-4	chr6	145823936	145824136	+	707.700012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15653.0	NM_027760	71323.0	Mm.158669	NM_027760	ENSMUSG00000030259	Rassf8	5133400D11Rik|AA815821|AW123240|Hoj1|mHoj-1	Ras association (RalGDS/AF-6) domain family (N-terminal) member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-127451240-2	chr3	127451140	127451340	+	751.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001327938, intron 1 of 47)	MLT2B1|LTR|ERVL	-42182.0	NM_001327939	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117905890-4	chr10	117905784	117905984	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19575.0	NR_045342	71067.0	Mm.410793	NR_045342	ENSMUSG00000112500	4933411E08Rik	-	RIKEN cDNA 4933411E08 gene	ncRNA	3.96615009699899	4.35821691051545	4.27599919840055	3.74465100353349	3.71651502507175	4.14793970006832	3.80534883949569	3.43922660513017	-0.431041120103074	0.348333041261658	0.848378678037495
Merged-chr11-11763528-4	chr11	11763440	11763640	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025597, intron 7 of 7)	intron (NM_001025597, intron 7 of 7)	45422.0	NM_021891	60530.0	Mm.236114	NM_021891	ENSMUSG00000035455	Fignl1	-	fidgetin-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-80014542-4	chr12	80014463	80014663	+	852.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-78299.0	NR_131074	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-178242336-4	chr1	178242237	178242437	+	994.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024282, intron 2 of 4)	B2_Mm2|SINE|B2	54920.0	NM_024282	78825.0	Mm.440132	NM_024282	ENSMUSG00000026502	Desi2	5830417C01Rik|DeSI-2|Fam152a|Pppde1	desumoylating isopeptidase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-26454548-4	chr6	26454456	26454656	+	962.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	523130.0	NR_040771	626904.0	Mm.126787	NR_040771	ENSMUSG00000106799	Gm20756	-	predicted gene, 20756	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-17211607-2	chr16	17211507	17211707	+	793.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001033338, exon 1 of 1)	exon (NM_001033338, exon 1 of 1)	3472.0	NM_001033338	239731.0	Mm.86671	NM_001033338	ENSMUSG00000071636	Rimbp3	Gm1759|Gm603|RIM-BP3|mKIAA1666	RIMS binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-59194451-2	chr7	59194351	59194551	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-34299.0	NM_001033962	22215.0	Mm.9002	NM_011668	ENSMUSG00000025326	Ube3a	4732496B02|5830462N02Rik|A130086L21Rik|Hpve6a	ubiquitin protein ligase E3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99458582-2	chr7	99458486	99458686	+	772.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001362168, intron 16 of 17)	intron (NM_001362168, intron 16 of 17)	-7418.0	NM_028145	72184.0	Mm.153585	NM_028145	ENSMUSG00000035298	Klhl35	2810406K13Rik	kelch-like 35	protein-coding	0.453518838375261	0.16666890849454	-0.354825099493812	-0.35851875740158	-0.36375340398805	-0.348975952207183	-0.353770770627041	-0.35787285862642	-3.73770979452464	0.145254262361672	1
Merged-chr19-47003903-1	chr19	47003803	47004003	+	970.0	f0_balb.idr	intron (NM_001164363, intron 1 of 17)	Lx8b|LINE|L1	-10795.0	NM_146100	226180.0	Mm.276251	NM_146100	ENSMUSG00000034336	Ina	AV028420|NF-66|NF66	internexin neuronal intermediate filament protein, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-88720043-4	chr10	88719953	88720153	+	959.758301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11048.0	NM_001037166	237433.0	Mm.478763	NM_001037166		Gm4925	EG237433	predicted gene 4925	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-32332761-4	chr16	32332643	32332843	+	874.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177633, intron 1 of 10)	CpG	491.0	NM_177633	224111.0	Mm.31275	NM_177633	ENSMUSG00000053774	Ubxn7	A630090P18|AI196514|Ubxd7|mKIAA0794	UBX domain protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-145431724-2	chr2	145431624	145431824	+	594.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_053195, intron 2 of 16)	intron (NM_053195, intron 2 of 16)	123258.0	NM_001037929	627302.0	Mm.445953	NM_001037929		Gm14092	-	predicted gene 14092	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-9159506-4	chr13	9159382	9159582	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172585, intron 13 of 17)	intron (NM_172585, intron 13 of 17)	65601.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-49319901-1	chr6	49319801	49320001	+	720.0	f1_c57bl6.idr	intron (NM_001311112, intron 1 of 3)	intron (NM_001311112, intron 1 of 3)	627.0	NM_001311112	57895.0	Mm.32416	NM_175098	ENSMUSG00000050786	Ccdc126	6330407D12Rik|AA675040|AI465320|AL022711	coiled-coil domain containing 126	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-4893671-2	chr6	4893571	4893771	+	734.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9649.0	NM_181595	243725.0	Mm.332901	NM_181595	ENSMUSG00000032827	Ppp1r9a	2810430P21Rik|4930518N04Rik|5330407E15|A230094E16Rik|BB181831|NRB|mKIAA1222|neurabin-I	protein phosphatase 1, regulatory (inhibitor) subunit 9A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-144679394-4	chr3	144679282	144679482	+	955.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	40953.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-62629680-4	chr4	62629563	62629763	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019492, intron 14 of 19)	intron (NM_019492, intron 14 of 19)	9991.0	NM_134257	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-88586329-4	chr1	88586191	88586391	+	976.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	34774.0	NR_037971	100503197.0	Mm.99352	NR_037971	ENSMUSG00000100798	Gm19589	-	predicted gene, 19589	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-28467151-2	chr2	28467051	28467251	+	618.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166031)	promoter-TSS (NM_001166031)	-827.0	NM_027040	69327.0	Mm.46470	NM_027040	ENSMUSG00000026831	1700007K13Rik	Rbest47	RIKEN cDNA 1700007K13 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-102053058-4	chr5	102052965	102053165	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 1 of 66)	intron (NM_172882, intron 1 of 66)	16856.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-142090270-2	chr4	142090174	142090374	+	835.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5970.0	NM_145402	214359.0	Mm.27587	NM_145402	ENSMUSG00000040616	Tmem51	BC003277	transmembrane protein 51	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-14347393-8	chr14	14347261	14347461	+	860.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008369, intron 2 of 11)	intron (NM_008369, intron 2 of 11)	866.0	NM_008369	16188.0	Mm.425857	NM_008369	ENSMUSG00000068758	Il3ra	CD123|CDw123|SUT-1	interleukin 3 receptor, alpha chain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97211357-4	chr6	97211282	97211482	+	708.450012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022992, intron 1 of 2)	intron (NM_022992, intron 1 of 2)	590.0	NM_022992	65106.0	Mm.291014	NM_022992	ENSMUSG00000035199	Arl6ip5	5930404D22Rik|AV001879|Aip-5|Gtrap3-18|addiscin	ADP-ribosylation factor-like 6 interacting protein 5	protein-coding	1.62068710847672	1.64612073071233	1.10405549987783	1.86700500296553	1.27673156940193	1.85184859844919	2.59585196600714	3.0145862845506	1.92308044827326	0.067538414053028	0.390097867830591
Merged-chr7-143628732-3	chr7	143628628	143628828	+	911.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175649)	promoter-TSS (NM_175649)	658.0	NR_153817	414103.0	Mm.446579	NR_153817		E230032D23Rik	-	RIKEN cDNA E230032D23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-24981602-4	chr19	24981543	24981743	+	896.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17886.0	NM_028785	76088.0	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-61577044-2	chr2	61576944	61577144	+	816.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1542.0	NM_011529	21353.0	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129828250-2	chr4	129828150	129828350	+	799.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164745, intron 1 of 5)	intron (NM_001164745, intron 1 of 5)	7542.0	NM_001164745	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-17710318-3	chr12	17710319	17710519	+	752.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016677, intron 1 of 3)	intron (NM_016677, intron 1 of 3)	19610.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	-0.744583320681159	-1.08907322251399	-0.785644459993082	-1.107169678969	-1.10976210705869	-1.08671647804793	-1.09748667004409	-1.10684838342435	-2.59718020795451	0.420837302388055	1
Merged-chr16-55823969-2	chr16	55823869	55824069	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030612, intron 2 of 13)	intron (NM_030612, intron 2 of 13)	-1831.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-86993829-4	chr11	86993733	86993933	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001005341)	promoter-TSS (NM_001005341)	-71.0	NM_001005341	77864.0	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-3994600-2	chr15	3994500	3994700	+	931.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145930, intron 1 of 5)	intron (NM_145930, intron 1 of 5)	1152.0	NM_145930	106064.0	Mm.21299	NM_145930	ENSMUSG00000041935	AW549877	AI195826	expressed sequence AW549877	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67714099-2	chr10	67713999	67714199	+	948.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-142140.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-76822467-4	chr12	76822415	76822615	+	849.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134050)	promoter-TSS (NM_134050)	9.0	NM_134050	104886.0	Mm.172847	NM_134050	ENSMUSG00000021062	Rab15	2310012G06Rik|AI840042	RAB15, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-98168597-2	chr15	98168497	98168697	+	730.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_177716, exon 1 of 1)	exon (NM_177716, exon 1 of 1)	791.0	NM_177716	239650.0	Mm.54140	NM_177716	ENSMUSG00000029875	Ccdc184	5630400A08|AI836003	coiled-coil domain containing 184	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-43995611-1	chr10	43995511	43995711	+	545.0	f1_c57bl6.idr	intron (NM_172393, intron 2 of 19)	Lx4B|LINE|L1	9235.0	NM_172393	11630.0	Mm.292082	NM_172393	ENSMUSG00000019866	Crybg1	AI462491|AI463325|Aim1	crystallin beta-gamma domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-78085483-2	chr10	78085383	78085583	+	635.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16115.0	NM_015790	50723.0	Mm.17819	NM_015790	ENSMUSG00000000732	Icosl	AU044799|B7-H2|B7RP-1|B7h|BG071784|GI50|GL50|GL50-B|ICOS-L|Icoslg|LICOS|Ly115l|mKIAA0653	icos ligand	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-136054077-3	chr4	136053954	136054154	+	686.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025919)	promoter-TSS (NM_025919)	-683.0	NM_025919	67025.0	Mm.276856	NM_025919	ENSMUSG00000059291	Rpl11	2010203J19Rik	ribosomal protein L11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-70808930-1	chr6	70808830	70809030	+	556.0	f1_balb.idr	Intergenic	RMER30|DNA|hAT-Charlie	-16755.0	NM_009075	19895.0	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-127584668-4	chr2	127584517	127584717	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028141)	promoter-TSS (NM_028141)	60.0	NM_001111029	72180.0	Mm.46715	NM_028141	ENSMUSG00000034800	Zfp661	2810405K07Rik|A1-5|Znf2	zinc finger protein 661	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34644195-2	chr17	34644095	34644295	+	575.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019873)	promoter-TSS (NM_019873)	-688.0	NM_019873	56299.0	Mm.10025	NM_019873	ENSMUSG00000033739	Fkbpl	DIR1|NG7|Ppiase-X|Wisp39	FK506 binding protein-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-147320980-2	chr3	147320880	147321080	+	878.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	468613.0	NM_001302957	70892.0	Mm.187793	NM_027594	ENSMUSG00000036745	Ttll7	1110049N09Rik|4921517B04Rik|C630030B20|mTTLL7	tubulin tyrosine ligase-like family, member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75679191-4	chr11	75679096	75679296	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001277221)	promoter-TSS (NM_001277221)	-63.0	NM_001277219	12928.0	Mm.280125	NM_133656	ENSMUSG00000017776	Crk	Crk-I|Crk-II|Crk-III|Crk3|CrkIII|Crko|c-Crk|p38	v-crk avian sarcoma virus CT10 oncogene homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-58029545-2	chr2	58029445	58029645	+	643.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172855, intron 7 of 9)	intron (NM_172855, intron 7 of 9)	23207.0	NM_029972	77767.0	Mm.91712	NM_029972	ENSMUSG00000026830	Ermn	A330104H05Rik|AI854460|ermin|mKIAA1189	ermin, ERM-like protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35088052-2	chr17	35087952	35088152	+	614.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-1239.0	NM_178592	193742.0	Mm.43745	NM_178592	ENSMUSG00000007036	Abhd16a	AI326074|Bat-5|Bat5|D17H6S82E|NG26	abhydrolase domain containing 16A	protein-coding	1.54943648932566	2.34524292036084	2.9405937519644	2.85620994247977	1.56244630133183	2.19140909832689	3.32950454269885	3.02805068723187	0.342526397159636	0.69755861913636	0.998087997318924
Merged-chr7-67425364-4	chr7	67425269	67425469	+	994.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52511.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	0.730867065254681	0.851410722221563	0.448520901252816	0.440973894898617	0.597158699639186	1.26251769301099	0.450665742675645	1.3302012056867	1.79729791323948	0.283393445714679	1
Merged-chr6-101556494-4	chr6	101556397	101556597	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-178600.0	NM_018884	55983.0	Mm.321654	NM_018884	ENSMUSG00000035357	Pdzrn3	1110020C07Rik|AI429718|AL023082|LNX3|SEMACAP3|Semcap3	PDZ domain containing RING finger 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-70737625-2	chr17	70737525	70737725	+	882.7999880000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347411, intron 9 of 14)	intron (NM_001347411, intron 9 of 14)	109152.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-16935196-2	chr18	16935096	16935296	+	715.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2B|LINE|L1	-100312.0	NR_130158	75433.0	Mm.60907	NR_130158	ENSMUSG00000087170	1700001G01Rik	-	RIKEN cDNA 1700001G01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-43168689-2	chr16	43168589	43168789	+	636.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285805, intron 2 of 10)	intron (NM_001285805, intron 2 of 10)	-78595.0	NM_181058	56490.0	Mm.136238	NM_019778	ENSMUSG00000022708	Zbtb20	1300017A20Rik|7330412A13Rik|A930017C21Rik|D16Wsu73e|DPZF|HOF|J20|ODA-8S|Oda8|Tg(PDGFB-APPSwInd)20Lms|Zfp288	zinc finger and BTB domain containing 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-88269481-2	chr1	88269381	88269581	+	798.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040291)	promoter-TSS (NR_040291)	-73.0	NR_040291	78605.0	Mm.384762	NR_040291		6430706D22Rik	-	RIKEN cDNA 6430706D22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105171113-2	chr8	105171013	105171213	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161458, intron 1 of 5)	CpG	439.0	NM_001161458	12400.0	Mm.2018	NM_022309	ENSMUSG00000031885	Cbfb	AI893578|PEA2|PEBP2b|Pebp2|Pebpb2	core binding factor beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-80302814-4	chr11	80302712	80302912	+	922.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139228, intron 2 of 8)	intron (NM_139228, intron 2 of 8)	1900.0	NM_139228	246104.0	Mm.194148	NM_139228	ENSMUSG00000017692	Rhbdl3	AI847581|Rhbdl4|Rhomr1|Vrho	rhomboid like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-23752855-1	chr13	23752755	23752955	+	829.0	f1_c57bl6.idr	TTS (NM_178203)	TTS (NM_178203)	475.0	NM_178203	319150.0		NM_178203	ENSMUSG00000069267	Hist1h3b	H3-53	histone cluster 1, H3b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-8829850-4	chr19	8829727	8829927	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081196, exon 11 of 14)	exon (NM_001081196, exon 11 of 14)	-7640.0	NM_001136064	14705.0	Mm.345134	NM_008144	ENSMUSG00000071657	Bscl2	2900097C17Rik|AI046355|Gng3lg	Berardinelli-Seip congenital lipodystrophy 2 (seipin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140392854-4	chr5	140392704	140392904	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3496.0	NM_172277	231834.0	Mm.27098	NM_172277	ENSMUSG00000029560	Snx8	B130023O14Rik	sorting nexin 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-77606589-2	chr18	77606489	77606689	+	670.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41453.0	NM_001164504	225743.0	Mm.23293	NM_001164504	ENSMUSG00000025427	Rnf165	2900024M11Rik|AI427432|Akd2|Ark2c|G630064H08Rik|Gm96	ring finger protein 165	protein-coding	1.94369020136908	1.34932615607774	1.65429163791197	2.29427865245632	1.24205513907883	1.86868848647304	1.80484926101818	1.28923444475398	-0.87010937460381	0.423411104700231	0.900460846988572
Merged-chr5-105701575-4	chr5	105701452	105701652	+	825.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178701, intron 1 of 2)	intron (NM_178701, intron 1 of 2)	742.0	NM_178701	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	4.05145532276137	3.63651521035736	3.5977804666746	3.2309821390218	4.34910474109516	3.9747807513651	3.54177708710799	2.4505244722792	0.131244429132749	0.820247897415021	0.998431161219273
Merged-chr14-122107575-3	chr14	122107488	122107688	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015586)	promoter-TSS (NR_015586)	506.0	NM_080556	68059.0	Mm.275191	NM_080556	ENSMUSG00000025544	Tm9sf2	1500001N15Rik|AA536814|D14Ertd64e|P76	transmembrane 9 superfamily member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-40358331-3	chr10	40358228	40358428	+	781.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291816, intron 1 of 11)	intron (NM_001291816, intron 1 of 11)	9020.0	NM_001291816	78334.0	Mm.200924	NM_198164	ENSMUSG00000038481	Cdk19	2700084L06Rik|AI845279|AW228747|CDK11|Cdc2l6|mKIAA1028	cyclin-dependent kinase 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-111939990-4	chr8	111939890	111940090	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026693)	promoter-TSS (NM_026693)	-713.0	NM_026693	93739.0	Mm.371666	NM_026693	ENSMUSG00000031950	Gabarapl2	0610012F20Rik|2900019O08Rik|AI173605|GATE-16|Gef2	gamma-aminobutyric acid (GABA) A receptor-associated protein-like 2	protein-coding	2.92275202789175	3.04267353705256	1.90095972039038	3.52990012717177	2.34337782864745	2.35900300697582	2.27620452964501	1.36719069687111	-1.6582516359012	0.0500614498898016	0.32631507195464
Merged-chr4-134767991-4	chr4	134767870	134768070	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145554)	promoter-TSS (NM_145554)	34.0	NM_145554	100017.0	Mm.27486	NM_145554	ENSMUSG00000037295	Ldlrap1	AA691260|ARH2|Arh|Arh1|FHCB1|FHCB2	low density lipoprotein receptor adaptor protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-111197083-2	chr10	111196983	111197183	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001003717, intron 1 of 22)	RMER1B|Other|Other	32281.0	NM_175489	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-56608396-3	chr6	56608285	56608485	+	954.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	96314.0	NM_025520	66373.0	Mm.25642	NM_025520	ENSMUSG00000091625	Lsm5	2010208O10Rik|2310034K10Rik	LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-126521049-2	chr2	126520949	126521149	+	874.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21202.0	NM_001359975	241633.0	Mm.222235	NM_001080944	ENSMUSG00000060131	Atp8b4	Im	ATPase, class I, type 8B, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-54074007-2	chr10	54073907	54074107	+	775.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008548, intron 2 of 12)	intron (NM_008548, intron 2 of 12)	1789.0	NM_008548	17155.0	Mm.117294	NM_008548	ENSMUSG00000003746	Man1a	Man1a1|PCR1	mannosidase 1, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-28486606-4	chr6	28486520	28486720	+	916.2708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019776, intron 1 of 23)	intron (NM_019776, intron 1 of 23)	6272.0	NM_019776	56463.0	Mm.439987	NM_019776	ENSMUSG00000001424	Snd1	AL033314|Tudor-SN	staphylococcal nuclease and tudor domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-23151764-4	chr19	23151661	23151861	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010638, intron 1 of 1)	intron (NM_010638, intron 1 of 1)	2330.0	NR_035423	100316672.0		NR_035423	ENSMUSG00000080626	Mir1192	Mirn1192|mmu-mir-1192	microRNA 1192	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-129886102-2	chr10	129886002	129886202	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F|LINE|L1	-11347.0	NM_207159	259165.0	Mm.377868	NM_207159	ENSMUSG00000059134	Olfr814	MOR113-5|MOR113-8	olfactory receptor 814	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-78526317-3	chr9	78526233	78526433	+	907.955566	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44609.0	NM_010106	13627.0	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-13543018-2	chr17	13542918	13543118	+	592.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045436, intron 2 of 4)	intron (NR_045436, intron 2 of 4)	11076.0	NR_045436	72578.0	Mm.46549	NR_045436	ENSMUSG00000038347	2700054A10Rik	-	RIKEN cDNA 2700054A10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-101947813-2	chr5	101947713	101947913	+	727.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 10 of 66)	intron (NM_172882, intron 10 of 66)	122108.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100944055-1	chr7	100943955	100944155	+	706.0	f0_balb.idr	intron (NM_183168, intron 1 of 2)	intron (NM_183168, intron 1 of 2)	-11894.0	NM_001081116	207212.0	Mm.29954	NM_001081116	ENSMUSG00000032875	Arhgef17	8030463K16|AI428794|AW558066|BC035332|mKIAA0337	Rho guanine nucleotide exchange factor (GEF) 17	protein-coding	3.01438658043442	3.16483847342377	4.35368937659562	3.56661963913821	4.36194094214783	3.90780354966891	3.92623541008173	4.47912762532989	0.786735538885344	0.121314572873004	0.546643694128403
Merged-chr1-144300843-4	chr1	144300734	144300934	+	938.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-51730.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-23028324-4	chr8	23028179	23028379	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110783, intron 1 of 43)	intron (NM_001110783, intron 1 of 43)	-6820.0	NM_001277281	11733.0	Mm.334444	NM_031158	ENSMUSG00000031543	Ank1	Ank-1|nb|pale	ankyrin 1, erythroid	protein-coding	3.08130156282994	2.92261050044432	3.39965038036865	2.9069256614227	1.89074029854414	2.32013552015771	1.34586652658693	1.30491006329052	-2.86209219305682	0.00108427046997235	0.0206931236989316
Merged-chr18-61536700-7	chr18	61536588	61536788	+	991.347595	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177828)	promoter-TSS (NM_177828)	-152.0	NM_177828	328967.0	Mm.488098	NM_177828	ENSMUSG00000045094	Arhgef37	4933429F08Rik	Rho guanine nucleotide exchange factor (GEF) 37	protein-coding	1.45528860406554	1.05197557477687	2.1026146235094	1.6544617047612	1.58305568052303	1.28693146283674	1.83400070307304	1.53692661832956	-0.185860727223102	0.871378983035942	0.998431161219273
Merged-chr6-126836280-2	chr6	126836180	126836380	+	828.666687	f1_balb.idr|f1_c57bl6.idr	exon (NM_025358, exon 6 of 11)	exon (NM_025358, exon 6 of 11)	12864.0	NM_025358	66108.0	Mm.29939	NM_025358	ENSMUSG00000000399	Ndufa9	1010001N11Rik	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-138656884-2	chr5	138656752	138656952	+	954.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33993.0	NM_183025	243308.0	Mm.36612	NM_183025	ENSMUSG00000056014	A430033K04Rik	C86988	RIKEN cDNA A430033K04 gene	protein-coding	0.642712505542322	1.90720067744462	1.63573117883271	1.6729344246036	1.15465865949705	0.697799896579568	0.681463696563507	0.667157788458278	-3.05250415320153	0.0532621976158185	0.337758904331179
Merged-chr3-95740713-4	chr3	95740613	95740813	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356965, intron 17 of 17)	intron (NM_001356965, intron 17 of 17)	-1144.0	NM_001252653	13601.0	Mm.3433	NM_007899	ENSMUSG00000028108	Ecm1	AI663821|p85	extracellular matrix protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-38742667-3	chr6	38742555	38742755	+	835.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010433, intron 6 of 14)	intron (NM_010433, intron 6 of 14)	79586.0	NM_001101507	665180.0	Mm.349066	NM_001101507	ENSMUSG00000079598	Clec2l	AI414054|AW122724|Gm1064	C-type lectin domain family 2, member L	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-46556335-4	chr17	46556224	46556424	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020493)	promoter-TSS (NM_020493)	-162.0	NM_020493	20807.0	Mm.45044	NM_020493	ENSMUSG00000015605	Srf	AW049942|AW240594	serum response factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-88257699-8	chr1	88257631	88257831	+	916.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001281466, exon 38 of 42)	exon (NM_001281466, exon 38 of 42)	11677.0	NR_040291	78605.0	Mm.384762	NR_040291		6430706D22Rik	-	RIKEN cDNA 6430706D22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-172082746-4	chr1	172082664	172082864	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021607)	promoter-TSS (NM_021607)	-15.0	NM_021607	59287.0	Mm.218203	NM_021607	ENSMUSG00000003458	Ncstn	9430068N19Rik|AA727311|Aph2|D1Dau13e|Kiaa0253|Nct|mKIAA0253	nicastrin	protein-coding	4.894674289658	4.88116610069973	4.48424903112325	4.85325212264066	5.15111044133212	4.3566757932056	4.9346946980524	5.04971907652448	0.151692741081408	0.658124755744381	0.988704682801132
Merged-chr2-10048094-4	chr2	10048018	10048218	+	823.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027748, intron 1 of 6)	CpG	491.0	NM_027748	209361.0	Mm.86343	NM_027748	ENSMUSG00000025782	Taf3	140kDa|4933439M23Rik|AW539625|TAF140|TAFII-140|TAFII140|mTAFII140	TATA-box binding protein associated factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31168615-2	chr14	31168515	31168715	+	603.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138672)	promoter-TSS (NM_138672)	26.0	NM_138672	192187.0	Mm.220821	NM_138672	ENSMUSG00000042286	Stab1	FEEL-1|FELE-1|MFEEL-1|MS-1|STAB-1|mKIAA0246	stabilin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-54263504-2	chr11	54263404	54263604	+	601.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3775.0	NM_010556	16187.0	Mm.983	NM_010556	ENSMUSG00000018914	Il3	BPA|Csfmu|HCGF|Il-3|MCGF|PSF	interleukin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-101506096-1	chr13	101505996	101506196	+	637.0	f1_c57bl6.idr	Intergenic	Intergenic	-108516.0	NR_046187	78136.0	Mm.399065	NR_046187		4922502H24Rik	-	RIKEN cDNA 4922502H24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-28424013-3	chr6	28423904	28424104	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007480, intron 1 of 5)	intron (NM_007480, intron 1 of 5)	400.0	NM_007480	11844.0	Mm.389075	NM_007480	ENSMUSG00000020440	Arf5	-	ADP-ribosylation factor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-92853745-4	chr8	92853655	92853855	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008610)	TTS (NM_008610)	-1578.0	NM_173014	270084.0	Mm.21463	NM_173014	ENSMUSG00000033192	Lpcat2	1-AGPAT 11|A330042H22|Aytl1|Aytl1a|lpafat1|lysoPAFAT|lysoPAFAT/LPCAT2	lysophosphatidylcholine acyltransferase 2	protein-coding	3.01648088697613	3.5259452646527	3.34091370950645	3.25064798890314	2.5783693417217	2.60984259651133	2.66713757088446	2.82321086143298	-1.12237237291504	0.0752371590104607	0.415733236325226
Merged-chr2-126600683-4	chr2	126600595	126600795	+	931.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008230, intron 9 of 11)	intron (NM_008230, intron 9 of 11)	17983.0	NM_008230	15186.0	Mm.18603	NM_008230	ENSMUSG00000027360	Hdc	AW108189|Hdc-a|Hdc-c|Hdc-e|Hdc-s	histidine decarboxylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-181193208-4	chr2	181193100	181193300	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5953.0	NM_001356427	66496.0	Mm.213943	NM_025598	ENSMUSG00000016344	Ppdpf	0610012G23Rik|2610317A05Rik|2700038C09Rik|3110053G12Rik	pancreatic progenitor cell differentiation and proliferation factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5867620-2	chr17	5867520	5867720	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025664, intron 1 of 17)	intron (NM_025664, intron 1 of 17)	26240.0	NM_025664	66616.0	Mm.89515	NM_025664	ENSMUSG00000002365	Snx9	2700073N08Rik|SDP1|SH3PX1	sorting nexin 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53153797-2	chr4	53153697	53153897	+	867.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 1 of 49)	intron (NM_013454, intron 1 of 49)	6098.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-26799821-4	chr10	26799716	26799916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176837, intron 1 of 14)	intron (NM_176837, intron 1 of 14)	27304.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-41615631-4	chr10	41615532	41615732	+	975.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358562, intron 24 of 47)	intron (NM_001358562, intron 24 of 47)	47616.0	NR_045341	70538.0	Mm.399807	NR_045341	ENSMUSG00000091370	5730435O14Rik	-	RIKEN cDNA 5730435O14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-79891664-2	chr10	79891564	79891764	+	841.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013459, intron 2 of 4)	intron (NM_013459, intron 2 of 4)	811.0	NM_001291915	11537.0	Mm.4407	NM_013459	ENSMUSG00000061780	Cfd	Adn|DF	complement factor D (adipsin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81195954-2	chr10	81195854	81196054	+	854.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_015477, intron 1 of 2)	intron (NR_015477, intron 1 of 2)	1263.0	NR_015477	69678.0	Mm.81562	NR_015477		Atcayos	2310050B05Rik	ataxia, cerebellar, Cayman type, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-28074805-3	chr10	28074682	28074882	+	756.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008983)	promoter-TSS (NM_008983)	-38.0	NM_001359355	19272.0	Mm.332303	NM_008983	ENSMUSG00000019889	Ptprk	AI853699|PTPk|RPTPkappa	protein tyrosine phosphatase, receptor type, K	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-92331722-3	chr1	92331626	92331826	+	871.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	132816.0	NR_105865	102465542.0		NR_105865	ENSMUSG00000098288	Mir6900	Gm27708|mmu-mir-6900	microRNA 6900	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-94588776-2	chr11	94588657	94588857	+	659.041626	f1_balb.idr|f1_c57bl6.idr	intron (NM_153807, intron 1 of 15)	intron (NM_153807, intron 1 of 15)	13029.0	NM_153807	264895.0	Mm.386885	NM_153807	ENSMUSG00000076435	Acsf2	-	acyl-CoA synthetase family member 2	protein-coding	-0.385466131982289	0.628797090952127	-0.374022212106074	-0.378300882885902	0.0482357442091188	-0.367282215118481	-0.372804112419433	-0.37755140985192	-1.69302687706944	0.512217065423094	1
Merged-chr13-30972317-4	chr13	30972203	30972403	+	845.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025588, intron 1 of 27)	ORR1E|LTR|ERVL-MaLR	1744.0	NM_025588	66482.0	Mm.293510	NM_025588	ENSMUSG00000021357	Exoc2	2410030I24Rik|AI648199|Sec5|Sec5l1	exocyst complex component 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-94183364-4	chr8	94183251	94183451	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4262.0	NM_013602	17748.0	Mm.192991	NM_013602	ENSMUSG00000031765	Mt1	MT-I|Mt-1	metallothionein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-77965620-2	chr10	77965520	77965720	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_138301, intron 4 of 33)	L3|LINE|CR1	4252.0	NM_138301	28240.0	Mm.276762	NM_138301	ENSMUSG00000009292	Trpm2	9830168K16Rik|C79133|LTRPC2|TRPC7|Trp7|Trrp7	transient receptor potential cation channel, subfamily M, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-63136519-2	chr9	63136419	63136619	+	611.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10461.0	NM_172446	207667.0	Mm.36349	NM_172446	ENSMUSG00000022245	Skor1	AV273001|C230094B15Rik|Corl1|Lbxcor1	SKI family transcriptional corepressor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-45945016-4	chr11	45944919	45945119	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028185)	promoter-TSS (NM_028185)	-84.0	NM_028185	72290.0	Mm.249827	NM_028185	ENSMUSG00000044847	Lsm11	2210404M20Rik|AV079530	U7 snRNP-specific Sm-like protein LSM11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-4877390-1	chr5	4877290	4877490	+	811.333313	f0_balb.idr	intron (NM_011074, intron 14 of 14)	intron (NM_011074, intron 14 of 14)	-119174.0	NM_021457	14362.0	Mm.246003	NM_021457	ENSMUSG00000044674	Fzd1	AW227548|FZ-1|Fz1	frizzled class receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-112652947-2	chr12	112652847	112653047	+	631.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001165894)	TTS (NM_001165894)	6404.0	NR_105904	102465566.0		NR_105904	ENSMUSG00000098380	Mir6939	Gm27498|mmu-mir-6939	microRNA 6939	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34134951-2	chr17	34134800	34135000	+	674.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360530, intron 1 of 5)	PB1D9|SINE|Alu	9382.0	NM_001360530	14998.0	Mm.16373	NM_010386	ENSMUSG00000037649	H2-DMa	H-2Ma|H2-Ma	histocompatibility 2, class II, locus DMa	protein-coding	-1.29633872064033	-1.26720680975202	-1.27768629845203	-1.28629446248818	-0.70879630402184	-1.2649358608345	-1.2753139719142	-1.28475360524138	2.50884260628271	0.468217847016783	1
Merged-chr4-119991923-2	chr4	119991822	119992022	+	799.333374	f0_balb.idr|f1_c57bl6.idr	intron (NM_010657, intron 1 of 8)	intron (NM_010657, intron 1 of 8)	-169284.0	NM_007902	13615.0	Mm.284855	NM_007902	ENSMUSG00000028635	Edn2	ET-2|PPET2|VIC	endothelin 2	protein-coding	-0.662826441749988	-1.00555184936033	-1.01675512286785	-1.01992432642343	-0.654846858003193	-1.00312405325568	-1.01421894731451	-1.01959449741028	0.0418081237259606	0.989738874530268	1
Merged-chr11-60209343-3	chr11	60209219	60209419	+	838.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358315, intron 1 of 18)	intron (NM_001358315, intron 1 of 18)	1152.0	NM_001358314	20787.0	Mm.278701	NM_011480	ENSMUSG00000020538	Srebf1	ADD1|SREBP1|bHLHd1	sterol regulatory element binding transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-102002600-3	chr2	102002510	102002710	+	654.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178886, intron 4 of 5)	intron (NM_178886, intron 4 of 5)	116348.0	NM_029635	76501.0	Mm.330424	NM_029635	ENSMUSG00000027163	Commd9	1810029F08Rik|AA409293	COMM domain containing 9	protein-coding	2.06927636471315	1.91476149128978	1.72371324430473	2.05071964185067	0.796694982170333	0.862469487024954	0.84185952725799	0.823693870282334	-5.31950628555996	0.000186547191604078	0.00508680273833121
Merged-chr11-79525754-2	chr11	79525654	79525854	+	673.833374	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001033711)	TTS (NM_001033711)	-1992.0	NM_001077496	216984.0	Mm.439665	NM_001077496	ENSMUSG00000093938	Evi2b	Evi-2|Evi2	ecotropic viral integration site 2b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-118143878-3	chr4	118143779	118143979	+	689.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161823, intron 18 of 21)	intron (NM_001161823, intron 18 of 21)	-8933.0	NM_001161774	20441.0	Mm.251002	NM_009176	ENSMUSG00000028538	St3gal3	ST3GalIII|ST3N|Siat3|Siat6	ST3 beta-galactoside alpha-2,3-sialyltransferase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-90710498-3	chr16	90710412	90710612	+	680.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16859.0	NM_025642	66578.0	Mm.180363	NM_025642	ENSMUSG00000022978	Mis18a	2610039C10Rik|2810018N07Rik	MIS18 kinetochore protein A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-18235583-2	chr14	18235483	18235683	+	814.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011584, intron 1 of 7)	intron (NM_011584, intron 1 of 7)	3523.0	NM_011584	353187.0	Mm.26587	NM_011584	ENSMUSG00000021775	Nr1d2	RVR|Rev-erb	nuclear receptor subfamily 1, group D, member 2	protein-coding	0.0606441813452774	-0.639832725466845	-0.643281483704193	-0.481753561543501	-0.50383381007249	-0.63905451703331	-0.642521343574074	-0.645474350538963	-2.42165018780432	0.365320413319739	1
Merged-chr15-5739848-3	chr15	5739752	5739952	+	896.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	243534.0	NR_045274	71432.0	Mm.291087	NR_045274	ENSMUSG00000110018	5430437J10Rik	-	RIKEN cDNA 5430437J10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-48704550-2	chr2	48704450	48704650	+	740.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-109559.0	NM_007396	11480.0	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-94125855-2	chr16	94125755	94125955	+	634.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_011377, exon 11 of 11)	exon (NM_011377, exon 11 of 11)	40595.0	NM_011377	20465.0	Mm.4775	NM_011377	ENSMUSG00000062713	Sim2	bHLHe15	single-minded family bHLH transcription factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-89607625-4	chr18	89607531	89607731	+	969.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039173, intron 1 of 7)	B4A|SINE|B4	161505.0	NM_001039173	623279.0	Mm.447164	NM_001039173	ENSMUSG00000073514	Dok6	Dok-6	docking protein 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-116099143-4	chr9	116099047	116099247	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029575, intron 5 of 6)	intron (NM_029575, intron 5 of 6)	76216.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	1.18322722086479	1.58732335795571	0.552764131041478	0.543750702834898	1.09534198379543	0.566851268479628	1.21997599330354	0.545333730924717	-0.67282760509308	0.688295869289223	0.996533206832645
Merged-chr15-74528273-3	chr15	74528198	74528398	+	682.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359759, intron 1 of 30)	MIR|SINE|MIR	12102.0	NM_001359759	107831.0	Mm.43133	NM_174991	ENSMUSG00000034730	Adgrb1	B830018M07Rik|Bai1|R75078|mKIAA4089	adhesion G protein-coupled receptor B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-133552877-6	chr2	133552749	133552949	+	935.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_007553, exon 1 of 3)	5' UTR (NM_007553, exon 1 of 3)	690.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-74246369-2	chr13	74246269	74246469	+	975.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001317351, intron 3 of 9)	intron (NM_001317351, intron 3 of 9)	-37669.0	NM_177333	211446.0	Mm.261859	NM_177333	ENSMUSG00000034152	Exoc3	2810050O03Rik|E430013E20Rik|Sec6|Sec6l1	exocyst complex component 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-62920657-4	chr10	62920563	62920763	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175194)	promoter-TSS (NM_175194)	30.0	NM_175194	73132.0	Mm.37457	NM_175194	ENSMUSG00000071253	Slc25a16	3110021G18Rik|GDA|GDC|HGT.1|ML7	solute carrier family 25 (mitochondrial carrier, Graves disease autoantigen), member 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-110121106-2	chr7	110121006	110121206	+	746.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355058)	promoter-TSS (NM_001355058)	-953.0	NM_001355058	22390.0	Mm.287173	NM_009516	ENSMUSG00000031016	Wee1	Wee1A	WEE 1 homolog 1 (S. pombe)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-31077976-1	chr6	31077876	31078076	+	741.0	f0_balb.idr	Intergenic	Intergenic	-14883.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127919888-2	chr7	127919788	127919988	+	780.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360699, intron 3 of 10)	B1_Mur4|SINE|Alu	6874.0	NM_001360699	67773.0	Mm.425492	NM_026370	ENSMUSG00000030801	Kat8	2010203C02Rik|5830450F21Rik|D7Ertd629e|MOF|MYST-1|Myst1	K(lysine) acetyltransferase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-23565926-3	chr11	23565825	23566025	+	640.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-7083.0	NR_004857	100134990.0	Mm.247328	NR_004857	ENSMUSG00000085415	Selenok-ps1	Gm12060	selenoprotein K, pseudogene 1	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-86491880-2	chr1	86491780	86491980	+	586.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34677.0	NR_153834	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-80323960-4	chr17	80323821	80324021	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145452, intron 1 of 17)	intron (NM_001145452, intron 1 of 17)	16514.0	NM_001145452	381112.0	Mm.360004	NM_001145452	ENSMUSG00000054901	Arhgef33	Gm941	Rho guanine nucleotide exchange factor (GEF) 33	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-11426884-4	chr2	11426778	11426978	+	996.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-28378.0	NR_040615	77543.0	Mm.490670	NR_040615	ENSMUSG00000102674	8030442B05Rik	-	RIKEN cDNA 8030442B05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-112634930-2	chr12	112634830	112635030	+	874.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007421, intron 8 of 12)	intron (NM_007421, intron 8 of 12)	-9898.0	NM_001161737	30954.0	Mm.289812	NM_013929	ENSMUSG00000064326	Siva1	CD27bp|Siva	SIVA1, apoptosis-inducing factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-39007337-4	chr6	39007207	39007407	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 5 of 12)	L2c|LINE|L2	60279.0	NR_040523	69986.0	Mm.490941	NR_040523	ENSMUSG00000100121	1700025N23Rik	-	RIKEN cDNA 1700025N23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94471654-4	chr10	94471547	94471747	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 2 of 4)	intron (NM_001359762, intron 2 of 4)	-43210.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-32617002-2	chr3	32616902	32617102	+	625.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013531)	promoter-TSS (NM_013531)	-412.0	NM_013531	14696.0	Mm.139192	NM_013531	ENSMUSG00000027669	Gnb4	6720453A21Rik|G(beta)4	guanine nucleotide binding protein (G protein), beta 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-11070184-5	chr16	11070090	11070290	+	899.8350220000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009223, intron 1 of 1)	intron (NM_009223, intron 1 of 1)	3892.0	NM_009223	20621.0	Mm.325800	NM_009223	ENSMUSG00000037972	Snn	2810407J07Rik|AI848521|AW547286	stannin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-106100849-2	chr1	106100749	106100949	+	599.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	70675.0	NR_040630	626049.0	Mm.247410	NR_040630	ENSMUSG00000101583	Gm20753	-	predicted gene, 20753	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-36772147-2	chr3	36772047	36772247	+	681.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-81980.0	NM_019510	22065.0	Mm.74363	NM_019510	ENSMUSG00000027716	Trpc3	Mwk|Trcp3|Trp3|Trrp3	transient receptor potential cation channel, subfamily C, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-17741685-4	chr2	17741596	17741796	+	912.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10628.0	NM_028757	74103.0	Mm.120298	NM_028757	ENSMUSG00000053702	Nebl	1200007O21Rik|A630080F05Rik|BB140644|D830029A09Rik|Lnebl	nebulette	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-38518334-4	chr15	38518229	38518429	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301688, intron 1 of 11)	CpG	937.0	NM_001301688	54375.0	Mm.250214	NM_018745	ENSMUSG00000037458	Azin1	1700085L02Rik|AZI|Oazi|Oazin	antizyme inhibitor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-38519438-4	chr15	38519330	38519530	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001102458)	promoter-TSS (NM_001102458)	-164.0	NM_018745	54375.0	Mm.250214	NM_018745	ENSMUSG00000037458	Azin1	1700085L02Rik|AZI|Oazi|Oazin	antizyme inhibitor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-34901812-3	chr8	34901714	34901914	+	856.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175091, intron 3 of 26)	intron (NM_175091, intron 3 of 26)	63876.0	NM_175091	21951.0	Mm.88364	NM_175091	ENSMUSG00000031529	Tnks	4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	protein-coding	0.210694620783748	0.680396368644869	0.233278992420923	0.224904364196324	0.212833790450698	1.43189411994846	0.235648827592996	1.10727627703007	2.89659129041058	0.146374843338526	1
Merged-chr9-67001275-4	chr9	67001172	67001372	+	877.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25788.0	NM_030717	80907.0	Mm.157882	NM_030717	ENSMUSG00000032370	Lactb	LACT-1|Lact1|Mrpl56	lactamase, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-60723556-2	chr10	60723456	60723656	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023596, intron 4 of 5)	intron (NM_023596, intron 4 of 5)	-27066.0	NM_023370	22295.0	Mm.440327	NM_023370	ENSMUSG00000012819	Cdh23	4930542A03Rik|USH1D|ahl|ahl1|bob|bus|mdfw|nmf112|nmf181|nmf252|sals|v	cadherin 23 (otocadherin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-95769719-2	chr4	95769619	95769819	+	839.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029347, intron 8 of 10)	intron (NM_029347, intron 8 of 10)	190298.0	NM_029347	75578.0	Mm.276098	NM_029347	ENSMUSG00000028573	Fggy	2310009E04Rik	FGGY carbohydrate kinase domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-29134910-4	chr7	29134804	29135004	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145149)	promoter-TSS (NM_145149)	-29.0	NM_001174155	233046.0	Mm.465324	NM_145149	ENSMUSG00000030589	Rasgrp4	-	RAS guanyl releasing protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100661493-3	chr7	100661415	100661615	+	679.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163182, intron 2 of 7)	intron (NM_001163182, intron 2 of 7)	879.0	NM_013746	27276.0	Mm.491216	NM_013746	ENSMUSG00000030701	Plekhb1	AI315628|PHR1|Phret1|evt-1	pleckstrin homology domain containing, family B (evectins) member 1	protein-coding	0.866601682560002	0.866890795052768	0.500816839105638	0.494654854930413	1.14837819113497	1.01621399784701	0.502575986906442	0.93262623572299	1.27307412560147	0.443278937095795	1
Merged-chr2-166190506-2	chr2	166190406	166190606	+	652.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34823.0	NM_028072	72043.0	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-98867512-4	chr15	98867416	98867616	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033276, intron 1 of 54)	intron (NM_001033276, intron 1 of 54)	3689.0	NM_001033276	381022.0	Mm.264889	NM_001033276	ENSMUSG00000048154	Kmt2d	ALR|BC032281|BC058659|C430014K11Rik|KMT2B|Mll2|Mll4	lysine (K)-specific methyltransferase 2D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80187050-4	chr7	80186883	80187083	+	874.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_013659, exon 1 of 15)	5' UTR (NM_013659, exon 1 of 15)	142.0	NM_013659	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-40244951-2	chr4	40244851	40245051	+	917.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5126.0	NM_172689	230073.0	Mm.86382	NM_172689	ENSMUSG00000040296	Ddx58	6430573D20Rik|C330021E21|RIG-I|RLR-1	DEAD (Asp-Glu-Ala-Asp) box polypeptide 58	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-45923424-3	chr1	45923302	45923502	+	919.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016917, intron 2 of 7)	intron (NM_016917, intron 2 of 7)	2192.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-87427479-2	chr11	87427379	87427579	+	810.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199293)	promoter-TSS (NM_001199293)	-112.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-66920371-4	chr10	66920298	66920498	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_138560)	promoter-TSS (NR_138560)	-14.0	NR_138561	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-103987590-4	chr11	103987500	103987700	+	903.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20729.0	NM_007477	11841.0	Mm.5061	NM_007477	ENSMUSG00000062421	Arf2	-	ADP-ribosylation factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19276447-2	chr7	19276347	19276547	+	893.666626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_177691)	TTS (NM_177691)	3602.0	NM_177691	232941.0	Mm.134068	NM_177691	ENSMUSG00000030402	Ppm1n	A930002H20|C79127	protein phosphatase, Mg2+/Mn2+ dependent, 1N (putative)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-15196459-2	chr18	15196359	15196559	+	673.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45013.0	NM_134112	106931.0	Mm.329299	NM_134112	ENSMUSG00000036225	Kctd1	4933402K10Rik|AI661543|AW553000	potassium channel tetramerisation domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-41212816-4	chr9	41212688	41212888	+	817.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040392, intron 2 of 4)	intron (NR_040392, intron 2 of 4)	6633.0	NR_040392	78500.0	Mm.275715	NR_040392	ENSMUSG00000100837	1700063D05Rik	-	RIKEN cDNA 1700063D05 gene	ncRNA	3.10561719154638	3.86887028581556	1.56467680589225	3.00318236794021	1.85059147430865	1.32423116315108	1.27417912832712	3.01961711073912	-1.86697797929325	0.053805771311059	0.339817910282598
Merged-chr8-122679933-1	chr8	122679833	122680033	+	611.0	f1_c57bl6.idr	intron (NM_009824, intron 1 of 11)	intron (NM_009824, intron 1 of 11)	-1758.0	NM_177289	12398.0	Mm.194339	NM_009824	ENSMUSG00000006362	Cbfa2t3	A630044F12Rik|AI465270|AW229127|Cbfa2t3h|ETO-2|Eto2|MTGR2	core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-123952236-4	chr4	123952113	123952313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34780.0	NM_017475	54170.0	Mm.220922	NM_017475	ENSMUSG00000028646	Rragc	AU041672|Gtr2|RAGC|TIB929|YGR163W	Ras-related GTP binding C	protein-coding	-0.181787157208287	0.041219846263096	-0.170310054409534	-0.174611985510998	0.22673487410687	-0.163507102534632	-0.169082961368928	0.751314641320679	3.10104682515809	0.17861198001154	1
Merged-chr1-33908027-4	chr1	33907932	33908132	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001276764)	promoter-TSS (NM_001276764)	-193.0	NM_001276764	13518.0	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64718307-4	chr5	64718223	64718423	+	864.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M3|LINE|L1	-85200.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	2.93755304384658	2.90752981081258	2.91406869115125	2.92589622098956	2.61528513828465	3.22341961410228	1.88345622065483	3.02656093462647	-0.255665239840299	0.71837981348161	0.998431161219273
Merged-chr11-115297606-4	chr11	115297498	115297698	+	952.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178035)	promoter-TSS (NM_178035)	-52.0	NM_178035	328035.0	Mm.21995	NM_178035	ENSMUSG00000044788	Fads6	BC044804	fatty acid desaturase domain family, member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-41080519-4	chr13	41080490	41080690	+	725.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145803)	promoter-TSS (NM_001145803)	-884.0	NM_001145802	17152.0	Mm.8149	NM_008547	ENSMUSG00000021363	Mak	A930010O05Rik	male germ cell-associated kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106669911-4	chr11	106669806	106670006	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305158, intron 13 of 14)	intron (NM_001305158, intron 13 of 14)	45375.0	NM_001305158	18613.0	Mm.343951	NM_008816	ENSMUSG00000020717	Pecam1	C85791|Cd31|PECAM-1|Pecam	platelet/endothelial cell adhesion molecule 1	protein-coding	-0.266042061380843	-0.397123623382834	0.362281048126983	-0.239212409529263	-0.26202962005585	-0.396189635628611	-0.400352101117269	-0.403901144892287	-2.71280065719277	0.248716845361523	1
Merged-chr1-55506596-4	chr1	55506506	55506706	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114663, intron 1 of 5)	MIR|SINE|MIR	100660.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	2.6107485564757	3.88027523678521	2.38383063190815	2.30685834649916	3.43343014460796	3.11558898640611	4.33878346198264	3.79040933131479	1.21616416465101	0.0642623753362996	0.378569547930404
Merged-chr8-105302017-2	chr8	105301917	105302117	+	620.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_148952, intron 7 of 9)	intron (NM_148952, intron 7 of 9)	-3584.0	NM_172760	234683.0	Mm.237966	NM_172760	ENSMUSG00000014791	Elmo3	9930107J06|BC058752|CED-12|Ced12	engulfment and cell motility 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-151041180-4	chr1	151041075	151041275	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47740.0	NM_001024720	545370.0	Mm.379425	NM_001024720	ENSMUSG00000066842	Hmcn1	EG545370|FIBL-6|Gm201	hemicentin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25712025-4	chr7	25711967	25712167	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028771, exon 5 of 5)	3' UTR (NM_028771, exon 5 of 5)	6986.0	NM_028771	52132.0	Mm.278798	NM_028771	ENSMUSG00000002608	Ccdc97	1200014H14Rik|2810446P04Rik|AA545218|D7Ertd462e	coiled-coil domain containing 97	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101372169-4	chr15	101372060	101372260	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2035.0	NM_028770	74127.0	Mm.440055	NM_028770	ENSMUSG00000037185	Krt80	1200016G03Rik|2310041I20Rik|Kb20	keratin 80	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-39607066-2	chr6	39606966	39607166	+	831.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_139294, exon 22 of 22)	3' UTR (NM_139294, exon 22 of 22)	14501.0	NR_152450	68198.0	Mm.29415	NM_026612	ENSMUSG00000002416	Ndufb2	1810011O01Rik|8kDa|AGGG|AI325567|CI-AGGG	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-121369590-2	chr10	121369490	121369690	+	634.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029364, intron 1 of 13)	URR1A|DNA|hAT-Charlie	4500.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166677297-2	chr2	166677197	166677397	+	985.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	36535.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-163665283-2	chr2	163665183	163665383	+	949.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039390, intron 2 of 4)	intron (NM_001039390, intron 2 of 4)	6825.0	NM_001164053	18769.0	Mm.10091	NM_011106	ENSMUSG00000035268	Pkig	PKIgamma	protein kinase inhibitor, gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-30941962-1	chr14	30941862	30942062	+	542.0	f1_c57bl6.idr	exon (NM_001306078, exon 4 of 22)	exon (NM_001306078, exon 4 of 22)	1327.0	NM_008406	16424.0	Mm.3227	NM_008406	ENSMUSG00000006529	Itih1	ITI-HC1|Intin1|Itih-1	inter-alpha trypsin inhibitor, heavy chain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-92749601-3	chr1	92749501	92749701	+	949.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-82044.0	NM_016696	14733.0	Mm.297976	NM_016696	ENSMUSG00000034220	Gpc1	AI462976	glypican 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-62553772-2	chr11	62553672	62553872	+	760.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_002875)	TTS (NR_002875)	2041.0	NM_001313984	22187.0	Mm.371592	NM_011664	ENSMUSG00000019505	Ubb	AL033289|Rps27a|Uba52|Ubb2|Ubc	ubiquitin B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-17432775-2	chr16	17432675	17432875	+	631.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-19210.0	NM_001277231	12929.0	Mm.21048	NM_007764	ENSMUSG00000006134	Crkl	1110025F07Rik|AA589403|AI325100|Crkol	v-crk avian sarcoma virus CT10 oncogene homolog-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-9879500-2	chr13	9879400	9879600	+	714.400024	f1_balb.idr|f1_c57bl6.idr	intron (NM_033269, intron 4 of 4)	intron (NM_033269, intron 4 of 4)	-114179.0	NM_144516	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-19987516-2	chr14	19987416	19987616	+	704.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10267.0	NM_001285909	14702.0	Mm.41737	NM_010315	ENSMUSG00000043004	Gng2	-	guanine nucleotide binding protein (G protein), gamma 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-24374096-4	chr7	24373985	24374185	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163510, intron 1 of 8)	intron (NM_001163510, intron 1 of 8)	3822.0	NM_008433	16534.0	Mm.9911	NM_008433	ENSMUSG00000054342	Kcnn4	IK1|IKCA1|KCA4|KCa3.1|SK4|SKCas|mIKCa1	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-55272166-4	chr9	55272083	55272283	+	961.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_032002, intron 3 of 7)	MTD|LTR|ERVL-MaLR	11442.0	NM_032002	83961.0	Mm.443874	NM_032002	ENSMUSG00000032311	Nrg4	AI552600	neuregulin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-95259279-4	chr11	95259191	95259391	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2238.0	NM_053093	93670.0	Mm.40085	NM_053093	ENSMUSG00000020872	Tac4	AW489379|PPT-C	tachykinin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-8276857-3	chr17	8276753	8276953	+	783.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6960.0	NM_018819	55951.0	Mm.288510	NM_018819	ENSMUSG00000023861	Mpc1	0610006G08Rik|3830411I18Rik|Brp44l	mitochondrial pyruvate carrier 1	protein-coding	1.69144828596266	2.0660625252028	1.83909247279456	1.78549279674106	1.54534078334506	2.34954101479867	1.46034600958874	3.11332407426832	1.1282695491998	0.249886581399282	0.748287654815788
Merged-chr11-115814105-4	chr11	115813998	115814198	+	973.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080643)	promoter-TSS (NM_080643)	-506.0	NM_080643	140721.0	Mm.383737	NM_080643	ENSMUSG00000034471	Caskin2	1600028L06Rik|mKIAA1139	CASK-interacting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19001678-2	chr7	19001578	19001778	+	729.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_145579)	TTS (NM_145579)	-2387.0	NM_178757	272359.0	Mm.274237	NM_178757	ENSMUSG00000044030	Irf2bp1	6330414O09Rik|C530033F24	interferon regulatory factor 2 binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94597242-3	chr10	94597097	94597297	+	628.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-10998.0	NR_106070	102466817.0		NR_106070	ENSMUSG00000098544	Mir7211	Gm27536|mmu-mir-7211	microRNA 7211	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-181245746-1	chr1	181245646	181245846	+	555.0	f0_balb.idr	Intergenic	Intergenic	-33768.0	NM_145514	226757.0	Mm.289082	NM_145514	ENSMUSG00000038733	Wdr26	1600024A01Rik|AA693241|AI447817|AU044014|C77982|Gid7	WD repeat domain 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117046187-2	chr10	117046087	117046287	+	658.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_146242, exon 1 of 1)	exon (NM_146242, exon 1 of 1)	846.0	NM_146242	237560.0	Mm.37320	NM_146242	ENSMUSG00000060187	Lrrc10	D330003I11Rik|Hrlrrp|Serdin1	leucine rich repeat containing 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-13868811-1	chr8	13868711	13868911	+	543.0	f1_c57bl6.idr	promoter-TSS (NM_181854)	promoter-TSS (NM_181854)	-830.0	NM_181854	101994.0	Mm.289346	NM_181854	ENSMUSG00000047710	Champ1	AA675043|AI116001|D8Ertd457e|D8Ertd569e|Zfp828|Znf828|mKIAA1802	chromosome alignment maintaining phosphoprotein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117305583-4	chr8	117305491	117305691	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	-43579.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-87757234-2	chr10	87757134	87757334	+	810.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-101031.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44884391-1	chr7	44884291	44884491	+	745.0	f1_c57bl6.idr	intron (NM_001331206, intron 9 of 16)	intron (NM_001331206, intron 9 of 16)	8033.0	NM_001331208	75613.0	Mm.157778	NM_029365	ENSMUSG00000002968	Med25	2610034E13Rik|2610529E18Rik|ESTM2	mediator complex subunit 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46934388-4	chr8	46934284	46934484	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52503.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-116172476-1	chr9	116172376	116172576	+	583.0	f0_balb.idr	intron (NM_009371, intron 1 of 7)	B4A|SINE|B4	2887.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	2.9742044102503	2.30503593929173	2.07339191438392	2.8663986376584	2.66971074878616	2.15973488625803	1.43493594037333	2.63136448501027	-0.617835008128074	0.4769802081247	0.927980290875356
Merged-chr10-3944102-3	chr10	3944010	3944210	+	644.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033253, intron 10 of 15)	intron (NM_001033253, intron 10 of 15)	-28965.0	NM_001170786	270685.0	Mm.184752	NM_172308	ENSMUSG00000040675	Mthfd1l	2410004L15Rik|AI647056|Fthfsdc1	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-123618189-4	chr4	123618088	123618288	+	987.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199137, intron 1 of 92)	intron (NM_001199137, intron 1 of 92)	1768.0	NR_105824	102465214.0		NR_105824	ENSMUSG00000099005	Mir6398	Gm27657|mmu-mir-6398	microRNA 6398	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81014309-2	chr15	81014209	81014409	+	611.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001082536, intron 13 of 13)	intron (NM_001082536, intron 13 of 13)	36544.0	NM_134091	105835.0	Mm.274943	NM_134091	ENSMUSG00000042303	Sgsm3	1810012I01Rik|AI428557|BB175482|Cip85|R75178|RUSC3|Rutbc3	small G protein signaling modulator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124845045-2	chr6	124844945	124845145	+	631.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_013534, exon 13 of 15)	exon (NM_013534, exon 13 of 15)	-4770.0	NM_013530	14695.0	Mm.68889	NM_013530	ENSMUSG00000023439	Gnb3	Gnb-3	guanine nucleotide binding protein (G protein), beta 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-119441542-2	chr8	119441442	119441642	+	676.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027950, intron 2 of 5)	intron (NM_027950, intron 2 of 5)	4380.0	NM_027950	71839.0	Mm.272357	NM_027950	ENSMUSG00000074063	Osgin1	1700012B18Rik|Okl38	oxidative stress induced growth inhibitor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27028789-4	chr2	27028684	27028884	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172659)	promoter-TSS (NM_172659)	-786.0	NM_001177627	227659.0	Mm.41203	NM_172659	ENSMUSG00000036067	Slc2a6	A330096C23|F630103L12Rik|Glut6|Glut9	solute carrier family 2 (facilitated glucose transporter), member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118236724-4	chr11	118236612	118236812	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	11880.0	NM_001112699	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118424866-3	chr11	118424771	118424971	+	876.2000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3586.0	NM_001204129	56745.0	Mm.23845	NM_019959	ENSMUSG00000017446	C1qtnf1	1600017K21Rik|CTRP1|Zsig37	C1q and tumor necrosis factor related protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-58658168-4	chr7	58658077	58658277	+	946.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009728)	promoter-TSS (NM_009728)	-25.0	NM_009728	11982.0	Mm.135129	NM_009728	ENSMUSG00000025324	Atp10a	Atp10c|pfatp	ATPase, class V, type 10A	protein-coding	-0.522010892211972	0.771737801314042	-0.279968903806295	-0.513300433667477	-0.520701737493831	-0.500122070638514	-0.506694280736744	-0.512395873758872	-3.9721769770724	0.108514998676158	1
Merged-chr15-80780546-2	chr15	80780446	80780646	+	649.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144812, intron 3 of 24)	intron (NM_144812, intron 3 of 24)	-18064.0	NM_177124	213988.0	Mm.131328	NM_144812	ENSMUSG00000047888	Tnrc6b	2700090M07Rik|A730065C02Rik|AI848765|D230019K20Rik	trinucleotide repeat containing 6b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-98703927-1	chr7	98703827	98704027	+	773.0	f1_balb.idr	promoter-TSS (NR_144495)	promoter-TSS (NR_144495)	680.0	NM_028410	72981.0	Mm.4428	NM_028410	ENSMUSG00000030753	Thap12	2900052B10Rik|Dap4|Prkrir|Rpkrir	THAP domain containing 12	protein-coding	1.49663781116292	2.23070572042475	1.14591762336483	0.898283640520936	0.875932191292518	1.56705909132467	1.51019291628125	1.91806834808279	-0.112470237029003	0.929974951870929	0.998431161219273
Merged-chr14-102451824-2	chr14	102451724	102451924	+	737.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	530808.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-25797155-4	chr17	25797053	25797253	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133719)	promoter-TSS (NM_133719)	-108.0	NM_133719	70083.0	Mm.41925	NM_133719	ENSMUSG00000002274	Metrn	1810034B16Rik|EyeLinc16|Hyrac	meteorin, glial cell differentiation regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116396804-2	chr11	116396704	116396904	+	894.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027258, intron 1 of 18)	B4|SINE|B4	16228.0	NM_027258	217340.0	Mm.426344	NM_027258	ENSMUSG00000052949	Rnf157	2610036E23Rik|A130073L17Rik|mKIAA1917	ring finger protein 157	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-13959439-2	chr14	13959339	13959539	+	703.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359900, intron 1 of 8)	intron (NM_001359900, intron 1 of 8)	1874.0	NM_001285780	66231.0	Mm.295875	NM_025435	ENSMUSG00000053453	Thoc7	Nif3l1bp1	THO complex 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-15300188-3	chr9	15300091	15300291	+	837.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199485, intron 2 of 8)	B3|SINE|B2	1416.0	NM_133732	70984.0	Mm.261842	NM_133732	ENSMUSG00000031938	4931406C07Rik	-	RIKEN cDNA 4931406C07 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-102571636-4	chr5	102571560	102571760	+	770.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029270, intron 2 of 9)	intron (NM_029270, intron 2 of 9)	90269.0	NM_029270	231532.0	Mm.440191	NM_029270	ENSMUSG00000057315	Arhgap24	0610025G21Rik	Rho GTPase activating protein 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-45750145-3	chr17	45750045	45750245	+	934.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152153, intron 2 of 4)	intron (NR_152153, intron 2 of 4)	15639.0	NR_152153	433111.0	Mm.213441	NR_152153	ENSMUSG00000097727	F630040K05Rik	-	RIKEN cDNA F630040K05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-58325596-4	chr15	58325517	58325717	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1448.0	NM_177755	268807.0	Mm.124498	NM_177755	ENSMUSG00000022357	Klhl38	8230402K04Rik	kelch-like 38	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-154613941-1	chr2	154613841	154614041	+	1000.0	f1_balb.idr	intron (NM_199304, intron 1 of 14)	CpG	573.0	NM_199304	228807.0	Mm.103555	NM_199304	ENSMUSG00000059842	Zfp341	Znf341	zinc finger protein 341	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-66519399-4	chr18	66519312	66519512	+	980.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15234.0	NR_040528	100503565.0	Mm.98256	NR_040528		Gm9926	-	predicted gene 9926	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-156045481-1	chr1	156045381	156045581	+	700.0	f1_balb.idr	intron (NM_172843, intron 2 of 6)	intron (NM_172843, intron 2 of 6)	4620.0	NM_022329	240832.0	Mm.253335	NM_022329	ENSMUSG00000050565	Tor1aip2	1110020D10Rik|15kDa|A130072J07|AA103493|AW060462|AW610675|C77739|Ifrg15|Lull1	torsin A interacting protein 2	protein-coding	1.32624923318473	1.82858943430327	1.2379080414692	2.04380994124588	1.33740005641047	1.50502140193007	0.99415388202779	2.69472536743558	0.492438233630268	0.671681999635683	0.994295938730731
Merged-chr12-8493527-4	chr12	8493402	8493602	+	931.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6507.0	NM_007483	11852.0	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-73278711-3	chr2	73278624	73278824	+	857.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6798.0	NM_001005343	381373.0	Mm.330293	NM_001005343	ENSMUSG00000068859	Sp9	-	trans-acting transcription factor 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-79485449-3	chr17	79485358	79485558	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7573.0	NR_033463	74622.0	Mm.311921	NR_033463		4930429F11Rik	-	RIKEN cDNA 4930429F11 gene	ncRNA	0.829428432333637	0.110404837304798	-0.305772982761859	-0.310600678442647	-0.31749574662372	-0.298189366530941	-0.304400516682096	-0.309754263117082	-4.00355532613581	0.0992377011022805	1
Merged-chr16-4965110-2	chr16	4965010	4965210	+	634.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028301)	promoter-TSS (NM_028301)	822.0	NM_001271586	74684.0	Mm.374835	NM_001271586	ENSMUSG00000022543	4930451G09Rik	-	RIKEN cDNA 4930451G09 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-29994631-2	chr5	29994531	29994731	+	627.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-18483.0	NM_001314054	16193.0	Mm.1019	NM_031168	ENSMUSG00000025746	Il6	Il-6	interleukin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-86191009-3	chr1	86190927	86191127	+	623.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001310702, exon 12 of 25)	exon (NM_001310702, exon 12 of 25)	36247.0	NM_001310702	78795.0	Mm.379264	NM_027456	ENSMUSG00000062590	Armc9	3830422A13Rik|4831423D23Rik|4930438O05Rik|5730415N24Rik	armadillo repeat containing 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-46736509-2	chr13	46736409	46736609	+	939.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8660.0	NM_175749	218210.0	Mm.255398	NM_175749	ENSMUSG00000021374	Nup153	B130015D15Rik|C88147	nucleoporin 153	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-168005883-3	chr2	168005768	168005968	+	797.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080708, intron 2 of 21)	intron (NM_001080708, intron 2 of 21)	4725.0	NM_001080708	69553.0	Mm.68454	NM_001080708	ENSMUSG00000074577	Ripor3	2310033K02Rik|Fam65c|Gm124	RIPOR family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-138840884-4	chr7	138840795	138840995	+	781.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045483, intron 1 of 1)	intron (NM_001045483, intron 1 of 1)	5372.0	NM_001045483	69546.0	Mm.31598	NM_027115	ENSMUSG00000041775	Mapk1ip1	2310009E07Rik|AU043776|MISS	mitogen-activated protein kinase 1 interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-50854027-4	chr2	50853928	50854128	+	884.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55656.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101050944-4	chr7	101050850	101051050	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38897.0	NM_001302346	18442.0	Mm.3000	NM_008773	ENSMUSG00000032860	P2ry2	P2U1|P2Y2	purinergic receptor P2Y, G-protein coupled 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27760257-19	chr2	27760093	27760293	+	900.600891	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011305, exon 10 of 10)	3' UTR (NM_011305, exon 10 of 10)	49610.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-126330729-3	chr10	126330619	126330819	+	837.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	364500.0	NM_177152	320398.0	Mm.275586	NM_177152	ENSMUSG00000020105	Lrig3	9030421L11Rik|9130004I02Rik|9430095K15Rik|mKIAA3016	leucine-rich repeats and immunoglobulin-like domains 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-31599324-2	chr5	31599224	31599424	+	654.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-14627.0	NM_025796	66845.0	Mm.120763	NM_025796	ENSMUSG00000106918	Mrpl33	0610009M10Rik|L33mt|MRP-L33	mitochondrial ribosomal protein L33	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-5044597-3	chr6	5044501	5044701	+	887.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181595, intron 2 of 15)	intron (NM_181595, intron 2 of 15)	141281.0	NM_181595	243725.0	Mm.332901	NM_181595	ENSMUSG00000032827	Ppp1r9a	2810430P21Rik|4930518N04Rik|5330407E15|A230094E16Rik|BB181831|NRB|mKIAA1222|neurabin-I	protein phosphatase 1, regulatory (inhibitor) subunit 9A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-20215456-3	chr11	20215354	20215554	+	811.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008996, intron 1 of 5)	intron (NM_008996, intron 1 of 5)	14042.0	NM_008996	19324.0	Mm.271944	NM_008996	ENSMUSG00000020149	Rab1a	Gtbp|Rab-1|Rab1|Ypt1|mKIAA3012	RAB1A, member RAS oncogene family	protein-coding	1.23658467895625	2.63131655202252	3.04851099766784	2.46414262480601	1.24520227938831	2.65154681220125	2.5596744624293	2.36721189290332	-0.391901098089735	0.693077159504717	0.99740158133691
Merged-chr13-45391721-4	chr13	45391644	45391844	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153789, intron 2 of 6)	intron (NM_153789, intron 2 of 6)	2002.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-22018080-2	chr14	22017980	22018180	+	551.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1632.0	NM_028275	76633.0	Mm.489898	NM_028275	ENSMUSG00000063458	Lrmda	1700112E06Rik|2700009F18Rik	leucine rich melanocyte differentiation associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88513726-8	chr3	88513603	88513803	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10351.0	NM_001002011	16905.0	Mm.243014	NM_019390	ENSMUSG00000028063	Lmna	Dhe	lamin A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83317605-4	chr6	83317460	83317660	+	983.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008638)	promoter-TSS (NM_008638)	44.0	NM_008638	17768.0	Mm.443	NM_008638	ENSMUSG00000005667	Mthfd2	AW558851|NMDMC	methylenetetrahydrofolate dehydrogenase (NAD+ dependent), methenyltetrahydrofolate cyclohydrolase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-103163392-4	chr15	103163278	103163478	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027885)	promoter-TSS (NM_027885)	-94.0	NM_027885	71726.0	Mm.254820	NM_027885	ENSMUSG00000036061	Smug1	1200013B09Rik|A930006H09Rik|C85220	single-strand selective monofunctional uracil DNA glycosylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-95919032-3	chr10	95918893	95919093	+	764.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21670.0	NM_001001932	216238.0	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135149501-4	chr5	135149406	135149606	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013763)	promoter-TSS (NM_013763)	-205.0	NM_013763	27368.0	Mm.36746	NM_013763	ENSMUSG00000005374	Tbl2	C76179|WS-bTRP	transducin (beta)-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75732814-4	chr11	75732726	75732926	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009536)	promoter-TSS (NM_009536)	-61.0	NM_009536	22627.0	Mm.234700	NM_009536	ENSMUSG00000020849	Ywhae	AU019196	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10291319-2	chr19	10291219	10291419	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198114, intron 1 of 19)	intron (NM_198114, intron 1 of 19)	13558.0	NM_198114	269060.0	Mm.329718	NM_198114	ENSMUSG00000035735	Dagla	Nsddr	diacylglycerol lipase, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-31514243-2	chr5	31514143	31514343	+	884.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_028150)	TTS (NM_028150)	12519.0	NM_028150	72195.0	Mm.164187	NM_028150	ENSMUSG00000053134	Supt7l	2610524B01Rik|6030455L14Rik	suppressor of Ty 7-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-31472940-2	chr2	31472840	31473040	+	723.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_002687, intron 1 of 15)	intron (NR_002687, intron 1 of 15)	2632.0	NR_002687	432466.0	Mm.333323	NR_002687	ENSMUSG00000046687	Gm5424	EG432466	argininosuccinate synthase pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-108336301-3	chr9	108336194	108336394	+	857.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016802, intron 5 of 5)	B1_Mus2|SINE|Alu	-2786.0	NM_001329528	14775.0	Mm.1090	NM_008160	ENSMUSG00000063856	Gpx1	AI195024|AL033363|CGPx|GPx-1|GSHPx-1|Gpx	glutathione peroxidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-120013435-1	chr9	120013335	120013535	+	791.0	f1_balb.idr	TTS (NM_011724)	TTS (NM_011724)	10163.0	NM_011724	22437.0	Mm.10117	NM_011724	ENSMUSG00000079243	Xirp1	AI415219|Cmya1	xin actin-binding repeat containing 1	protein-coding	-0.47194256801087	-0.610049008190725	-0.613941395764658	-0.616948427988578	-0.621203645831446	0.150148813331549	-0.42382762573605	-0.616422858681065	2.57255190437679	0.32566855732925	1
Merged-chr6-119373431-4	chr6	119373255	119373455	+	870.479126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197985, intron 1 of 7)	intron (NM_197985, intron 1 of 7)	15379.0	NM_001355692	68465.0	Mm.291826	NM_197985	ENSMUSG00000030168	Adipor2	1110001I14Rik|ADCR2|AI115388|AW554121|D6Ucla1e|Paqr2	adiponectin receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165786995-1	chr2	165786895	165787095	+	546.0	f1_balb.idr	intron (NM_027230, intron 23 of 23)	intron (NM_027230, intron 23 of 23)	71178.0	NM_001252585	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-32570157-4	chr4	32570045	32570245	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_026843, intron 1 of 4)	intron (NR_026843, intron 1 of 4)	1517.0	NR_026843	414068.0	Mm.389550	NR_026843	ENSMUSG00000086150	Bach2os	-	BTB and CNC homology 2, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-29396667-3	chr6	29396542	29396742	+	623.472229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347072)	promoter-TSS (NM_001347072)	58.0	NM_001347073	232664.0	Mm.251303	NM_145574	ENSMUSG00000029769	Ccdc136	4921511K06Rik|BC006583	coiled-coil domain containing 136	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-142460474-2	chr5	142460374	142460574	+	623.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_199068, exon 9 of 9)	3' UTR (NM_199068, exon 9 of 9)	-3457.0	NM_172725	231855.0	Mm.78250	NM_172725	ENSMUSG00000039623	Ap5z1	C330006K01Rik	adaptor-related protein complex 5, zeta 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96569392-2	chr3	96569292	96569492	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2591.0	NR_040409	100038464.0	Mm.475126	NR_040409	ENSMUSG00000074398	Gm15441	-	predicted gene 15441	ncRNA	-1.26571374789235	-1.51209590594483	-1.52146493977932	-1.38174326885381	-1.5409024774237	-1.51006559722904	-1.51934399588257	-1.52778336220656	-1.78996300869195	0.608863169873916	1
Merged-chr5-129999343-2	chr5	129999238	129999438	+	835.650024	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001357026)	TTS (NM_001357026)	3711.0	NM_010368	110006.0	Mm.3317	NM_010368	ENSMUSG00000025534	Gusb	AI747421|Gur|Gus|Gus-r|Gus-s|Gus-t|Gus-u|Gut|asd|g	glucuronidase, beta	protein-coding	2.71968568156845	1.81385823978919	1.01375259079744	1.49180229099663	1.75069141460481	3.38836572261298	1.02204681843193	1.50098658888119	0.734282706223556	0.520843141038848	0.947836760490745
Merged-chr6-38805822-3	chr6	38805711	38805911	+	943.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010433, intron 2 of 14)	intron (NM_010433, intron 2 of 14)	31500.0	NM_001136065	15258.0	Mm.23790	NM_010433	ENSMUSG00000061436	Hipk2	1110014O20Rik|B230339E18Rik|Stank	homeodomain interacting protein kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140511651-2	chr5	140511551	140511751	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021528, intron 1 of 1)	intron (NM_021528, intron 1 of 1)	6042.0	NM_021528	59031.0	Mm.28934	NM_021528	ENSMUSG00000036599	Chst12	AI595374|C4S-2|C4ST2	carbohydrate sulfotransferase 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120181963-2	chr8	120181863	120182063	+	655.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4494.0	NM_001033980	436062.0	Mm.334852	NM_001033980	ENSMUSG00000042269	Fam92b	1700120B06Rik	family with sequence similarity 92, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-84868321-2	chr10	84868221	84868421	+	949.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001024918, intron 11 of 17)	intron (NM_001024918, intron 11 of 17)	30173.0	NM_027689	71137.0	Mm.79070	NM_027689	ENSMUSG00000020037	Rfx4	4933412G19Rik|NYD-sp10	regulatory factor X, 4 (influences HLA class II expression)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-118137319-4	chr6	118137226	118137426	+	812.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030165, intron 1 of 7)	intron (NM_030165, intron 1 of 7)	1504.0	NM_001362149	78752.0	Mm.300317	NM_030165	ENSMUSG00000042042	Csgalnact2	4632415D10Rik|Galnact2	chondroitin sulfate N-acetylgalactosaminyltransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120237954-2	chr11	120237854	120238054	+	816.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_198423, intron 2 of 27)	CpG-2934	5007.0	NM_198423	268515.0	Mm.309498	NM_198423	ENSMUSG00000039741	Bahcc1	B930044J06|BC060615	BAH domain and coiled-coil containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-139208815-1	chr7	139208715	139208915	+	549.0	f1_c57bl6.idr	intron (NM_001162540, intron 1 of 11)	MLT1B|LTR|ERVL-MaLR	-4173.0	NM_027164	76612.0	Mm.17757	NM_027164	ENSMUSG00000015980	Lrrc27	1700071K18Rik|2310044E02Rik	leucine rich repeat containing 27	protein-coding	1.01990556022019	1.11907904530933	2.77728781294075	1.98316020875997	2.00064088037782	2.49091307146427	2.29922957859999	1.06786422097064	0.26808602451584	0.822841285295616	0.998431161219273
Merged-chr2-125123188-4	chr2	125123114	125123314	+	970.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162418, intron 1 of 14)	CpG	446.0	NM_001162417	17876.0	Mm.18535	NM_010852	ENSMUSG00000027201	Myef2	9430071B01|mKIAA1341	myelin basic protein expression factor 2, repressor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-58131194-1	chr13	58131094	58131294	+	780.0	f1_balb.idr	Intergenic	Intergenic	-2638.0	NM_029872	77134.0	Mm.490274	NM_029872	ENSMUSG00000007836	Hnrnpa0	1110055B05Rik|3010025E17Rik|Hnrpa0|hnRNP A0	heterogeneous nuclear ribonucleoprotein A0	protein-coding	0.256265705515323	0.0206645584378787	0.0158546568001441	0.515658866072085	0.262563058503613	0.0217512664554173	0.0169139769870017	0.522323475353815	0.0327304273181811	0.987640786525468	1
Merged-chr1-131638895-4	chr1	131638801	131639001	+	858.6416630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007799, intron 1 of 9)	Zaphod2|DNA|hAT-Tip100	587.0	NM_007799	13034.0	Mm.230249	NM_007799	ENSMUSG00000004552	Ctse	A430072O03Rik|C920004C08Rik|CE|CatE	cathepsin E	protein-coding	3.39827497187648	3.25232851495709	2.55095887451978	3.37736758673157	3.36565474842711	2.94483687070821	2.57121236479428	3.3217326139317	-0.161316781594687	0.797958912266475	0.998431161219273
Merged-chr11-103053387-1	chr11	103053287	103053487	+	765.0	f0_balb.idr	intron (NM_008707, intron 4 of 11)	B3|SINE|B2	24844.0	NM_008707	18107.0	Mm.10265	NM_008707	ENSMUSG00000020936	Nmt1	AW536594	N-myristoyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-134405989-9	chr1	134406000	134406200	+	998.555542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355133, intron 1 of 8)	CpG	319.0	NR_149307	72017.0	Mm.280230	NM_028057	ENSMUSG00000026456	Cyb5r1	1500005G05Rik|B5R.1|C80155|Nqo3a2	cytochrome b5 reductase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-31081737-2	chr17	31081637	31081837	+	675.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009593, intron 2 of 14)	intron (NM_009593, intron 2 of 14)	24043.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	-1.05877568042897	-1.03501312238488	-1.04817210678232	-1.05426068996071	-1.05810152525527	-1.03216151557194	-0.188696606725984	-1.05378786495764	3.16074139804981	0.330468818528456	1
Merged-chr13-67268728-3	chr13	67268620	67268820	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_155551, exon 1 of 6)	non-coding (NR_155551, exon 1 of 6)	274.0	NR_155551	238690.0	Mm.306358	NM_001001152	ENSMUSG00000055480	Zfp458	BC062958|Gm33446|Rslcan-7|Znf728|mszf59-2	zinc finger protein 458	protein-coding	2.38161758573457	1.78395973914517	2.4666960815193	1.67195914596156	3.88987627216788	2.84095451265797	2.48752120304411	3.31524551255672	2.15690670035019	0.00606395837770633	0.0770169787745807
Merged-chr4-114934897-2	chr4	114934797	114934997	+	575.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER63B|DNA|hAT-Blackjack	-8884.0	NM_015758	30923.0	Mm.377122	NM_015758	ENSMUSG00000044518	Foxe3	FREAC8|dyl|rct	forkhead box E3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-38550211-4	chr16	38550088	38550288	+	958.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001300827)	promoter-TSS (NM_001300827)	68.0	NR_153380	224143.0	Mm.284366	NM_172380	ENSMUSG00000034064	Poglut1	9630046K23Rik|Clp46|Ktelc1|Rumi|wsnp	protein O-glucosyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-181012733-2	chr1	181012633	181012833	+	894.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010145, intron 1 of 8)	RMER10A|LTR|ERVL	4836.0	NM_001312918	13849.0	Mm.9075	NM_010145	ENSMUSG00000038776	Ephx1	EH|Eph-1|Eph1|Epxh1|mEH	epoxide hydrolase 1, microsomal	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-99263684-2	chr6	99263584	99263784	+	845.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_053202, intron 2 of 18)	intron (NM_053202, intron 2 of 18)	2831.0	NM_001197321	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153557041-2	chr2	153556941	153557141	+	793.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27070.0	NM_001134300	329540.0	Mm.50600	NM_001001986	ENSMUSG00000061411	Nol4l	4931410H15|8430427H17Rik|AI429157|Gm1636	nucleolar protein 4-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-50175014-2	chr6	50174914	50175114	+	616.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361247, intron 6 of 12)	ID_B1|SINE|B4	64154.0	NM_001361248	56524.0	Mm.41288	NM_008016	ENSMUSG00000038388	Mpp6	P55t|Pals2	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-135824544-2	chr3	135824444	135824644	+	817.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026228)	promoter-TSS (NM_026228)	-735.0	NM_026228	67547.0	Mm.30239	NM_026228	ENSMUSG00000053897	Slc39a8	4933419D20Rik|AA986696|BIGM103|ZIP-8|Zip8	solute carrier family 39 (metal ion transporter), member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-124704392-4	chr2	124704310	124704510	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	50829.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-108727007-1	chr5	108726907	108727107	+	653.0	f1_c57bl6.idr	Intergenic	Intergenic	32778.0	NM_054071	116701.0	Mm.35691	NM_054071	ENSMUSG00000008090	Fgfrl1	FGFR5|FGFR5beta|FGFR5gamma	fibroblast growth factor receptor-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-134100197-2	chr1	134100097	134100297	+	618.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11045.0	NM_001284525	71884.0	Mm.328268	NM_027979	ENSMUSG00000026450	Chit1	2300002L19Rik	chitinase 1 (chitotriosidase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28373865-3	chr7	28373742	28373942	+	993.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1180.0	NM_001083912	101497.0	Mm.235700	NM_138752	ENSMUSG00000037552	Plekhg2	AI194308|Clg|Cslg	pleckstrin homology domain containing, family G (with RhoGef domain) member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-73646483-4	chr16	73646380	73646580	+	949.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	695587.0	NR_030464	751561.0		NR_030464	ENSMUSG00000104758	Mir691	Mirn691|mir-691|mmu-mir-691	microRNA 691	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-101657401-4	chr4	101657288	101657488	+	960.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175036, intron 3 of 3)	(A)n|Simple_repeat|Simple_repeat	9605.0	NM_175036	230514.0	Mm.4756	NM_175036	ENSMUSG00000035212	Leprot	LEPR|OB-RGRP|Obrgrp|VPS55	leptin receptor overlapping transcript	protein-coding	4.70682901748524	4.32811793341827	4.18157218116636	4.52014467567058	4.99869923304528	5.72862758324778	5.64629182873418	4.88414338888922	1.0816584096452	0.00212141958883767	0.0349306389206876
Merged-chr10-120113025-4	chr10	120112915	120113115	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080446)	promoter-TSS (NM_080446)	-50.0	NM_080446	117599.0	Mm.214703	NM_080446	ENSMUSG00000020228	Helb	AI447783|D10Ertd664e	helicase (DNA) B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-6773186-2	chr9	6773086	6773286	+	844.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	-403404.0	NM_001357484	76863.0	Mm.27293	NM_029775	ENSMUSG00000032002	Dcun1d5	3110001A18Rik|4833420K19Rik|AW060460|D430047L21Rik	DCN1, defective in cullin neddylation 1, domain containing 5 (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-29425598-2	chr2	29425498	29425698	+	641.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290489, intron 2 of 6)	intron (NM_001290489, intron 2 of 6)	47084.0	NM_001290490	68975.0	Mm.330109	NM_026896	ENSMUSG00000026799	Med27	1500015J03Rik|2310042P07Rik|AA682045|Crsp8|D2Ertd434e	mediator complex subunit 27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-27654035-2	chr7	27653956	27654156	+	700.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_028417, exon 1 of 3)	exon (NM_028417, exon 1 of 3)	132.0	NM_028417	73032.0	Mm.44095	NM_028417	ENSMUSG00000007944	Ttc9b	2900074C18Rik	tetratricopeptide repeat domain 9B	protein-coding	-1.84362945061595	-1.81329140012928	-1.67810947190254	-1.83000206547234	-1.84149977556685	-1.81130325271815	-1.67603257143677	-1.82865309133977	0.037684011990387	0.991491645451152	1
Merged-chr13-32935119-4	chr13	32935010	32935210	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30403.0	NM_011454	20708.0	Mm.36526	NM_011454	ENSMUSG00000042842	Serpinb6b	NK13|Spi12|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 6b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-18013842-1	chr5	18013742	18013942	+	705.0	f0_balb.idr	intron (NM_001081143, intron 5 of 7)	intron (NM_001081143, intron 5 of 7)	51272.0	NM_001081143	242851.0	Mm.332230	NM_001081143	ENSMUSG00000028777	Gnat3	Ggust|Gtn	guanine nucleotide binding protein, alpha transducing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122478006-2	chr8	122477906	122478106	+	828.166626	f1_balb.idr|f1_c57bl6.idr	intron (NR_152823, intron 4 of 14)	intron (NR_152823, intron 4 of 14)	1863.0	NR_152823	66965.0	Mm.482288	NM_153775	ENSMUSG00000049482	Ctu2	2310061F22Rik|C16orf84|Ncs2	cytosolic thiouridylase subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-34888706-4	chr18	34888616	34888816	+	987.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27509.0	NM_007913	13653.0	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-92086198-2	chr5	92086098	92086298	+	564.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359197, intron 1 of 10)	intron (NM_001359197, intron 1 of 10)	-2454.0	NM_001080795	23881.0	Mm.290530	NM_011816	ENSMUSG00000029405	G3bp2	AA409541|E430034L04Rik|G3BP|mKIAA0660	GTPase activating protein (SH3 domain) binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-135148293-2	chr1	135148193	135148393	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026823, intron 1 of 6)	intron (NM_026823, intron 1 of 6)	1459.0	NM_026823	68724.0	Mm.174998	NM_026823	ENSMUSG00000026426	Arl8a	1110033P22Rik|Arl10b|gie2	ADP-ribosylation factor-like 8A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-76648940-2	chr2	76648840	76649040	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011871)	promoter-TSS (NM_011871)	-946.0	NM_011871	23992.0	Mm.277250	NM_011871	ENSMUSG00000002731	Prkra	AV120107|PRK|Pact|RAX|lear	protein kinase, interferon inducible double stranded RNA dependent activator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-131047472-2	chr2	131047372	131047572	+	794.083374	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR22_Mur|LTR|ERVK	-4384.0	NM_001136063	14588.0	Mm.198399	NM_020014	ENSMUSG00000027316	Gfra4	AW060733|G630015H18Rik	glial cell line derived neurotrophic factor family receptor alpha 4	protein-coding	0.870592852233968	0.746571526991616	1.08833260245044	1.40601019555974	1.23952590416836	0.749045342333599	1.35925175445878	1.4145769127771	0.702195317431935	0.619836996614674	0.978663311075481
Merged-chr9-116181857-3	chr9	116181738	116181938	+	793.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-6475.0	NM_029575	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	1.18707444462443	1.78344438834069	0.519617928481982	0.509434370043411	0.840311813633051	0.535445758468514	0.522497289061268	1.28696243062498	-1.14450705775466	0.490874219679782	0.934345795476137
Merged-chr13-52588023-4	chr13	52587912	52588112	+	962.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198977, intron 1 of 13)	MLT1A1|LTR|ERVL-MaLR	4575.0	NM_001198977	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-83855373-2	chr7	83855273	83855473	+	976.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	28968.0	NM_030705	80889.0	Mm.272998	NM_030705	ENSMUSG00000070462	Tlnrd1	AW061151|Mesdc1	talin rod domain containing 1	protein-coding	-1.7024385483431	-1.81249224917775	-1.82134771053534	-1.82862185015837	-1.70038292649591	-1.81057323376012	-1.81934302819017	-1.82731978264371	0.0376840119903864	0.991491645451152	1
Merged-chr10-59458365-2	chr10	59458265	59458465	+	553.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033259, intron 4 of 7)	intron (NM_001033259, intron 4 of 7)	-16586.0	NM_010959	18302.0	Mm.123013	NM_010959	ENSMUSG00000009654	Oit3	EF-9|LZP	oncoprotein induced transcript 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80151903-4	chr10	80151805	80152005	+	976.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347117, intron 4 of 7)	intron (NM_001347117, intron 4 of 7)	2223.0	NM_001305799	59090.0	Mm.143813	NM_021565	ENSMUSG00000035621	Midn	3000003C15Rik	midnolin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24708041-2	chr17	24707934	24708134	+	960.5	f0_c57.idr|f1_c57bl6.idr	promoter-TSS (NM_145396)	promoter-TSS (NM_145396)	-381.0	NM_145396	213773.0	Mm.100353	NM_145396	ENSMUSG00000040688	Tbl3	9430070M15Rik	transducin (beta)-like 3	protein-coding	2.95710251892325	2.84715515820664	3.75104250598518	3.324833471456	1.830174427076	1.52740475440107	2.51651317236079	2.56337561808725	-2.06252955519441	0.0071686553820985	0.08612435975409
Merged-chr10-77901721-2	chr10	77901621	77901821	+	672.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_145152, exon 2 of 2)	5' UTR (NM_145152, exon 2 of 2)	815.0	NM_145152	237387.0	Mm.133301	NM_145152	ENSMUSG00000051652	Lrrc3	1300011L04Rik|C21orf102	leucine rich repeat containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135464314-2	chr5	135464214	135464414	+	842.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146001, intron 1 of 30)	intron (NM_146001, intron 1 of 30)	-69768.0	NM_148932	107939.0	Mm.28399	NM_148932	ENSMUSG00000053293	Pom121	2610027A18Rik|C80273|mKIAA0618	nuclear pore membrane protein 121	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122946020-4	chr8	122945912	122946112	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 2 of 12)	intron (NM_001081379, intron 2 of 12)	96272.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	1.1571432186183	0.850958885179663	2.07716074945588	2.00824612447929	0.998328158036399	0.855130009377931	1.81741093503586	1.04471629515409	-1.25361465734868	0.343069069080551	0.843915000140038
Merged-chr2-133480667-4	chr2	133480574	133480774	+	959.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-71485.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-90263077-3	chr9	90262981	90263181	+	899.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 1 of 12)	intron (NM_194334, intron 1 of 12)	7688.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-130854695-2	chr5	130854595	130854795	+	580.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	405903.0	NM_021371	140904.0	Mm.40875	NM_021371	ENSMUSG00000060371	Caln1	9630012C17Rik|Cabp8|MNCb-0849	calneuron 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-117927687-2	chr9	117927580	117927780	+	673.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-112842.0	NM_001286507	27215.0	Mm.92705	NM_013727	ENSMUSG00000039285	Azi2	AA410145|AZ2	5-azacytidine induced gene 2	protein-coding	2.00522898117212	1.68974401949392	2.0969189593185	1.8345928232667	1.02559492797636	1.84775961687965	1.64548755318329	1.05163347430174	-1.50942264500423	0.194590312403316	0.67477582889064
Merged-chr2-76255110-2	chr2	76255009	76255209	+	601.25	f0_balb.idr|f1_c57bl6.idr	intron (NM_001081033, intron 2 of 19)	intron (NM_001081033, intron 2 of 19)	83544.0	NM_001081033	241489.0	Mm.246613	NM_001081033	ENSMUSG00000075270	Pde11a	6330414F14Rik|A630086N24Rik|Gm350|PDE11A1	phosphodiesterase 11A	protein-coding	3.33064127257761	3.06768117050433	2.86500692670097	2.78209308729488	2.32388411327315	1.85120695922072	3.56957506596328	1.73208836375775	-0.742322283037378	0.35445706303226	0.853391720177295
Merged-chr15-78900697-4	chr15	78900584	78900784	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316685, intron 1 of 17)	intron (NM_001316685, intron 1 of 17)	916.0	NM_009164	20401.0	Mm.4462	NM_009164	ENSMUSG00000022436	Sh3bp1	3BP-1	SH3-domain binding protein 1	protein-coding	2.75127338318779	1.37883792016142	1.59830610717187	1.92671431544854	2.49107478735772	2.36385436090772	2.61152896405333	2.61834824274806	1.05908207615628	0.252102741356811	0.749808797917456
Merged-chr5-25527623-3	chr5	25527529	25527729	+	881.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2389.0	NR_027388	73571.0	Mm.105263	NR_027388	ENSMUSG00000101856	1700096K18Rik	-	RIKEN cDNA 1700096K18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-102982510-2	chr15	102982410	102982610	+	547.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008272, intron 2 of 2)	T-rich|Low_complexity|Low_complexity	-1447.0	NR_155438	102640931.0	Mm.385821	NR_155438		Gm36878	-	predicted gene, 36878	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44343352-2	chr9	44343252	44343452	+	839.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001110251)	promoter-TSS (NM_001110251)	876.0	NM_013551	15288.0	Mm.247676	NM_013551	ENSMUSG00000032126	Hmbs	PBGD|T25658|Ups|Uros1	hydroxymethylbilane synthase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-87223815-2	chr3	87223712	87223912	+	747.0	f0_c57.idr|f1_c57bl6.idr	Intergenic	ORR1E-int|LTR|ERVL-MaLR	39712.0	NM_030707	80891.0	Mm.45173	NM_030707	ENSMUSG00000015852	Fcrls	2810439C17Rik|9330158F12|FcRH2sc|Fcrh2|IFGP2|IgSR|MMAN-g|Msr2|moFcRH2sc	Fc receptor-like S, scavenger receptor	protein-coding	1.6207964510588	2.21587771358468	0.836482439843319	1.4344669784798	0.547853904090399	0.606073928437649	0.587840049170753	0.571760710220475	-5.14400824829247	0.000961977098222564	0.0188797184696963
Merged-chr8-111183557-2	chr8	111183457	111183657	+	673.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009149, intron 8 of 25)	intron (NM_009149, intron 8 of 25)	-38059.0	NR_040364	434350.0	Mm.442061	NR_040363		9430091E24Rik	-	RIKEN cDNA 9430091E24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-122257264-3	chr7	122257156	122257356	+	963.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31869.0	NM_001316672	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191253820-4	chr1	191253728	191253928	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29374.0	NR_151547	100504360.0	Mm.16927	NM_001033188		D730003I15Rik	AU020850	RIKEN cDNA D730003I15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-55787761-3	chr3	55787732	55787932	+	778.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030595, intron 40 of 57)	intron (NM_030595, intron 40 of 57)	5322.0	NM_010750	17116.0	Mm.440209	NM_010750	ENSMUSG00000056947	Mab21l1	AW047968	mab-21-like 1 (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44496463-4	chr7	44496316	44496516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028169)	promoter-TSS (NM_028169)	97.0	NM_197991	69683.0	Mm.294759	NM_197991	ENSMUSG00000008140	Emc10	2310044H10Rik|5430410O10Rik|Inm02|Mirta22	ER membrane protein complex subunit 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-86601160-2	chr17	86601076	86601276	+	555.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011104, intron 11 of 14)	intron (NM_011104, intron 11 of 14)	-152688.0	NM_010137	13819.0	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-83168175-2	chr8	83168077	83168277	+	796.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111304, intron 1 of 20)	intron (NM_001111304, intron 1 of 20)	2825.0	NM_027758	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	1.84551773961317	1.38480555779556	2.71552927551827	2.63785182677107	1.86078013854553	2.24964186200696	3.04477012986064	2.35701373316013	0.403193895830697	0.661358460045613	0.990963966817159
Merged-chr4-132895622-3	chr4	132895520	132895720	+	753.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11162.0	NM_133887	100226.0	Mm.28237	NM_133887	ENSMUSG00000028879	Stx12	AI850350|AU041521|Stx13	syntaxin 12	protein-coding	0.446264949545796	0.0139571152372884	0.548876940725633	0.00540703312436513	0.361961700220159	0.0150488274205152	0.180852434321134	0.00605572573248181	-1.03371708480002	0.628131345102517	1
Merged-chr19-3359436-2	chr19	3359336	3359536	+	669.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013495, intron 5 of 18)	intron (NM_013495, intron 5 of 18)	-29421.0	NM_001039658	17771.0	Mm.209941	NM_010841	ENSMUSG00000024905	Tesmin	Mtl5	testis expressed metallothionein like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-103997706-2	chr11	103997606	103997806	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30835.0	NM_007477	11841.0	Mm.5061	NM_007477	ENSMUSG00000062421	Arf2	-	ADP-ribosylation factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-97992918-2	chr3	97992818	97993018	+	889.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20620.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-38290458-4	chr2	38290358	38290558	+	969.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-3074.0	NM_146122	227801.0	Mm.314245	NM_146122	ENSMUSG00000035392	Dennd1a	6030446I19Rik|connecdenn	DENN/MADD domain containing 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153051865-2	chr2	153051765	153051965	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001011732, intron 1 of 2)	intron (NM_001011732, intron 1 of 2)	-14090.0	NM_145536	228788.0	Mm.299979	NM_145536	ENSMUSG00000027474	Ccm2l	-	cerebral cavernous malformation 2-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-160246142-3	chr1	160246014	160246214	+	956.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038621, intron 4 of 8)	intron (NM_001038621, intron 4 of 8)	-33222.0	NM_009786	12301.0	Mm.10702	NM_009786	ENSMUSG00000014226	Cacybp	SIP	calcyclin binding protein	protein-coding	-0.276530739815125	-0.63699660054666	-0.640403132238471	-0.643026435153032	-0.00233129066881277	-0.636227739063133	-0.639652412242567	-0.642568464212044	1.01660784876101	0.726686765579508	1
Merged-chr4-145223422-2	chr4	145223322	145223522	+	553.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011610, intron 7 of 9)	intron (NM_011610, intron 7 of 9)	23448.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-28805381-4	chr3	28805231	28805431	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026517)	promoter-TSS (NM_026517)	-177.0	NR_154889	68028.0	Mm.21724	NM_026517	ENSMUSG00000039221	Rpl22l1	3110001N18Rik|AU041196	ribosomal protein L22 like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-53268371-4	chr18	53268253	53268453	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029394, intron 1 of 6)	intron (NM_029394, intron 1 of 6)	22691.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-89987258-1	chr11	89987158	89987358	+	617.0	f1_c57bl6.idr	exon (NM_008796, exon 4 of 6)	exon (NM_008796, exon 4 of 6)	15636.0	NM_008796	18559.0	Mm.5062	NM_008796	ENSMUSG00000020553	Pctp	PC-TP|StarD2	phosphatidylcholine transfer protein	protein-coding	-2.05752322593321	-2.15521190974092	-2.16307242109104	-2.16952927915413	-2.17938029103484	-2.15350850414045	-2.16129297361887	-2.16837350464794	-0.683654500252594	0.846597994014493	1
Merged-chr11-59554359-4	chr11	59554247	59554447	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153314, intron 5 of 9)	RSINE1|SINE|B4	11661.0	NR_153314	216799.0	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-10418343-1	chr3	10418243	10418443	+	669.0	f0_balb.idr	3' UTR (NM_029068, exon 8 of 8)	3' UTR (NM_029068, exon 8 of 8)	21787.0	NM_029068	74718.0	Mm.440548	NM_029068	ENSMUSG00000027534	Snx16	4930522N22Rik|AI117577|AI747675	sorting nexin 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-41600162-4	chr13	41600051	41600251	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6065.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88579644-4	chr3	88579543	88579743	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356316)	promoter-TSS (NM_001356316)	35.0	NM_025448	66256.0	Mm.7091	NM_025448	ENSMUSG00000041355	Ssr2	1500032E05Rik|AI315033|AU020133|SSR-beta|TLAP|TRAPB|TRAPbeta	signal sequence receptor, beta	protein-coding	1.04918567546902	1.13711450062642	2.80740939833878	1.97475505707461	1.75846647762929	1.41698352085659	2.55629134000619	1.98588583711034	0.055581796755127	0.961378658054041	0.998431161219273
Merged-chr4-12090008-4	chr4	12089935	12090135	+	844.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198957, intron 2 of 3)	CpG-9730	665.0	NM_198957	77604.0	Mm.474129	NM_198957	ENSMUSG00000052137	Rbm12b2	AV299215|C430048L16Rik|Rbm12bb	RNA binding motif protein 12 B2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-113027497-1	chr10	113027397	113027597	+	925.0	f0_balb.idr	Intergenic	Intergenic	-98471.0	NM_001033474	382423.0	Mm.431239	NM_001033474	ENSMUSG00000074748	Atxn7l3b	4921506J03Rik|6230409E21Rik|AI315132	ataxin 7-like 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115476125-2	chr11	115476025	115476225	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001361594, exon 2 of 3)	exon (NM_001361594, exon 2 of 3)	458.0	NM_001361594	276905.0	Mm.38019	NM_177778	ENSMUSG00000057219	Armc7	A630084C13|BC023126	armadillo repeat containing 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-97272390-2	chr16	97272290	97272490	+	707.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-84338.0	NM_019517	56175.0	Mm.97885	NM_019517	ENSMUSG00000040605	Bace2	1110059C24Rik|AEPLC|AI850424|ALP56|ARP1|ASP1|ASP21|BAE2|CDA13|CEAP1|DRAP	beta-site APP-cleaving enzyme 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52982891-4	chr13	52982764	52982964	+	995.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1825.0	NM_017373	18030.0	Mm.136604	NM_017373	ENSMUSG00000056749	Nfil3	AV225605|E4BP4	nuclear factor, interleukin 3, regulated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-12463006-2	chr13	12462906	12463106	+	811.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16|LTR|ERVK	-1268.0	NM_001291057	56048.0	Mm.474138	NM_018886	ENSMUSG00000057554	Lgals8	1200015E08Rik|AI326142|D13Ertd524e|Lgals-8	lectin, galactose binding, soluble 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115612356-2	chr11	115612256	115612456	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001243586, exon 1 of 5)	5' UTR (NM_001243586, exon 1 of 5)	147.0	NM_027162	69674.0	Mm.390387	NM_027162	ENSMUSG00000020743	Mif4gd	1110014L05Rik|2310075G12Rik	MIF4G domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55722198-4	chr14	55722062	55722262	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019519)	promoter-TSS (NM_019519)	40.0	NR_153435	56187.0	Mm.87216	NM_019519	ENSMUSG00000040472	Rabggta	gm	Rab geranylgeranyl transferase, a subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-110446363-2	chr5	110446263	110446463	+	624.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001317042, intron 1 of 2)	intron (NM_001317042, intron 1 of 2)	2140.0	NM_001317042	381668.0	Mm.348782	NM_028596	ENSMUSG00000043323	Fbrsl1	2410025L10Rik|AI467568|Gm1049|Gm29766|mKIAA1545	fibrosin-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-87722892-2	chr6	87722792	87722992	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7977.0	NM_001159697	58229.0	Mm.333229	NM_021418	ENSMUSG00000068263	Efcc1	Ccdc48	EF hand and coiled-coil domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80010702-1	chr7	80010602	80010802	+	566.0	f1_balb.idr	Intergenic	B1_Mur3|SINE|Alu	-14112.0	NM_001145999	209225.0	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-52395473-2	chr11	52395373	52395573	+	954.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153117)	promoter-TSS (NM_153117)	-955.0	NM_153117	213673.0	Mm.291979	NM_153117	ENSMUSG00000036275	9530068E07Rik	C85061|Kct2	RIKEN cDNA 9530068E07 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-48926445-2	chr11	48926345	48926545	+	619.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001045540, intron 1 of 2)	L1_Rod|LINE|L1	737.0	NM_001045540	620913.0	Mm.452174	NM_001045540	ENSMUSG00000048852	Gm12185	Irgb2b1	predicted gene 12185	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-49427008-1	chr9	49426908	49427108	+	752.0	f1_c57bl6.idr	promoter-TSS (NM_172922)	promoter-TSS (NM_172922)	13.0	NM_172922	244859.0	Mm.119994	NM_172922	ENSMUSG00000032257	Ankk1	9930020N01Rik	ankyrin repeat and kinase domain containing 1	protein-coding	2.05890403069878	2.78033142903039	1.26253020544815	2.84064606514	1.79947643183455	2.34872221754761	1.27106351277715	3.05238586956835	-0.169449685802753	0.868536861515758	0.998431161219273
Merged-chr4-154299672-2	chr4	154299572	154299772	+	554.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001112744, intron 1 of 14)	intron (NM_001112744, intron 1 of 14)	223.0	NM_001112744	230972.0	Mm.38481	NM_001112744	ENSMUSG00000029032	Arhgef16	-	Rho guanine nucleotide exchange factor (GEF) 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-48339205-2	chr2	48339105	48339305	+	548.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	-474904.0	NM_007396	11480.0	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-38085048-4	chr7	38084938	38085138	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	22452.0	NM_007633	12447.0	Mm.16110	NM_007633	ENSMUSG00000002068	Ccne1	AW538188|CycE1	cyclin E1	protein-coding	8.58582117406841	8.12021613457638	8.3251987168744	8.16941708033249	8.40461626520089	8.85190111665276	8.42631131312141	8.53100722195387	0.252397810974721	0.0673830087424082	0.389682521959229
Merged-chr6-4955379-4	chr6	4955278	4955478	+	721.950012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181595, intron 2 of 15)	intron (NM_181595, intron 2 of 15)	52058.0	NM_181595	243725.0	Mm.332901	NM_181595	ENSMUSG00000032827	Ppp1r9a	2810430P21Rik|4930518N04Rik|5330407E15|A230094E16Rik|BB181831|NRB|mKIAA1222|neurabin-I	protein phosphatase 1, regulatory (inhibitor) subunit 9A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6973519-2	chr19	6973419	6973619	+	739.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1529.0	NM_008889	18938.0	Mm.140	NM_008889	ENSMUSG00000056612	Ppp1r14b	AOM172|PHI-1|PLCB3N|Png	protein phosphatase 1, regulatory (inhibitor) subunit 14B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-73442586-4	chr15	73442494	73442694	+	996.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19403.0	NM_001358045	14083.0	Mm.254494	NM_007982	ENSMUSG00000022607	Ptk2	FADK 1|FAK|FRNK|Fadk|p125FAK	PTK2 protein tyrosine kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153515145-2	chr2	153515022	153515222	+	694.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001134300, intron 1 of 10)	intron (NM_001134300, intron 1 of 10)	14849.0	NM_001134300	329540.0	Mm.50600	NM_001001986	ENSMUSG00000061411	Nol4l	4931410H15|8430427H17Rik|AI429157|Gm1636	nucleolar protein 4-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-157416801-4	chr1	157416694	157416894	+	868.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027984, intron 2 of 2)	intron (NR_027984, intron 2 of 2)	-4199.0	NM_177644	226525.0	Mm.235028	NM_177644	ENSMUSG00000070565	Rasal2	6530401P13|A330066M24Rik	RAS protein activator like 2	protein-coding	0.386776476412974	-0.120571798325566	-0.124770467756518	0.266720661522736	0.118491681659698	0.0630709615002824	-0.123846311828547	-0.12743249978265	-1.26294461984175	0.57257655909208	1
Merged-chr7-75645737-3	chr7	75645683	75645883	+	800.266663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 8 of 36)	intron (NM_029332, intron 8 of 36)	190249.0	NM_029332	75547.0	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	0.749277923871053	0.47236701415915	0.462196027458164	0.454256237388791	1.26372792609053	0.474641838606403	0.987120250846328	1.43843157968332	3.18173131369455	0.0758280618811566	0.417460272155147
Merged-chr19-53677029-2	chr19	53676929	53677129	+	894.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001170847)	promoter-TSS (NM_001170847)	-277.0	NM_001170847	73713.0	Mm.313695	NM_001170847	ENSMUSG00000043639	Rbm20	1110018J23Rik|2010003H22Rik|AI646761	RNA binding motif protein 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-59876705-2	chr13	59876605	59876805	+	669.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53558.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-156530017-3	chr2	156529907	156530107	+	749.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001006664, intron 17 of 21)	intron (NM_001006664, intron 17 of 21)	-17569.0	NM_026661	68295.0	Mm.253648	NM_026661	ENSMUSG00000027628	Aar2	0610011L14Rik	AAR2 splicing factor homolog	protein-coding	2.81385356068957	2.96304866401272	2.65076401487126	3.18369252222155	2.91298569400124	1.90201389349221	2.24622482073422	2.9768491427299	-0.608800332395849	0.408333609853929	0.892181486875301
Merged-chr14-25589367-2	chr14	25589267	25589467	+	1000.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033492, exon 1 of 1)	non-coding (NR_033492, exon 1 of 1)	2563.0	NR_033492	77592.0	Mm.444871	NM_175264		4931406H21Rik	-	RIKEN cDNA 4931406H21 gene	ncRNA	-0.632973229346855	-0.621993181602012	-0.625593153155619	-0.62836886800414	-0.632288588996241	-0.114837605794168	-0.624799371546395	-0.0840103519032747	3.37462591379059	0.228834980983209	1
Merged-chr8-85800389-4	chr8	85800310	85800510	+	888.44165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028007, intron 6 of 17)	intron (NM_028007, intron 6 of 17)	40539.0	NM_028007	71927.0	Mm.61018	NM_028007	ENSMUSG00000031703	Itfg1	2310047C21Rik|AI314457|Cda08|D8Wsu49e	integrin alpha FG-GAP repeat containing 1	protein-coding	2.89922517334102	3.47804022959143	2.30772405823689	2.87218643758594	2.83939045051409	2.85118235572118	2.63002683904681	3.22268337884591	-0.0904632331137304	0.894051541314787	0.998431161219273
Merged-chr6-108781447-2	chr6	108781343	108781543	+	863.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1616.0	NM_026011	67166.0	Mm.271178	NM_026011	ENSMUSG00000030105	Arl8b	2610313E07Rik|3100002J04Rik|Arl10c|gie1	ADP-ribosylation factor-like 8B	protein-coding	3.02366542090886	3.31856198179502	1.4339579213484	2.8030028982341	2.91466659278413	3.01114509159972	2.14638520969855	1.67064448750589	-0.49073777694711	0.575794271595334	0.965286201225318
Merged-chr5-90500960-2	chr5	90500860	90501060	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007423, intron 7 of 14)	intron (NM_007423, intron 7 of 14)	10246.0	NM_007423	11576.0	Mm.358570	NM_007423	ENSMUSG00000054932	Afp	-	alpha fetoprotein	protein-coding	3.24638256217765	1.90910201673832	3.0458491913233	2.50933282922452	3.07127279278375	3.78012359215281	3.32762037995983	2.0215727257793	0.70186852257487	0.348302394285855	0.848378678037495
Merged-chr11-69979800-2	chr11	69979700	69979900	+	974.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_018740, intron 4 of 8)	intron (NM_018740, intron 4 of 8)	530.0	NM_001253700	54351.0	Mm.13430	NM_018740	ENSMUSG00000018565	Elp5	Derp6|Rai12	elongator acetyltransferase complex subunit 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-21212841-2	chr11	21212741	21212941	+	543.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26191.0	NM_139061	245944.0	Mm.170103	NM_139061	ENSMUSG00000020128	Vps54	Hcc8|Vps54l|mSLP8|wr	VPS54 GARP complex subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85596394-2	chr12	85596291	85596491	+	1000.0	f0_balb.idr|f0_c57.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-2714.0	NM_001205052	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-67803716-2	chr7	67803616	67803816	+	685.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045954)	promoter-TSS (NR_045954)	-220.0	NR_045954	73904.0	Mm.70992	NR_045954	ENSMUSG00000097697	4833412C05Rik	Bigheart	RIKEN cDNA 4833412C05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6577391-2	chr19	6577291	6577491	+	718.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34321.0	NM_009203	20521.0	Mm.391146	NM_009203	ENSMUSG00000061742	Slc22a12	AI987855|OAT4L|Rst|Slc22al2|URAT1	solute carrier family 22 (organic anion/cation transporter), member 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-107955069-2	chr14	107954969	107955169	+	554.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	959170.0	NM_199065	76965.0	Mm.257268	NM_199065	ENSMUSG00000075478	Slitrk1	3200001I04Rik	SLIT and NTRK-like family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-7344319-4	chr9	7344220	7344420	+	921.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001320077)	promoter-TSS (NM_001320077)	-77.0	NM_001320077	17381.0	Mm.2055	NM_008605	ENSMUSG00000049723	Mmp12	AV378681|MME|Mmel	matrix metallopeptidase 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-3032279-5	chr9	3032129	3032329	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GSAT_MM|Satellite|Satellite	6514.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111485606-2	chr12	111485506	111485706	+	863.333374	f1_balb.idr|f1_c57bl6.idr	exon (NM_001033248, exon 1 of 1)	exon (NM_001033248, exon 1 of 1)	217.0	NM_001033248	212539.0	Mm.81916	NM_001033248	ENSMUSG00000010529	Gm266	-	predicted gene 266	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-11280149-2	chr10	11280049	11280249	+	837.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-1181.0	NM_027968	71865.0	Mm.276229	NM_027968	ENSMUSG00000047648	Fbxo30	1700026A16Rik|MUSA1	F-box protein 30	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-116077888-1	chr6	116077788	116077988	+	745.0	f0_balb.idr	intron (NM_177412, intron 3 of 5)	intron (NM_177412, intron 3 of 5)	-82883.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-37776932-4	chr13	37776838	37777038	+	975.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49100.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134268216-3	chr6	134268122	134268322	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007961, exon 8 of 8)	3' UTR (NM_007961, exon 8 of 8)	-128107.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	4.07708129322796	4.76672220670022	4.60919534811262	5.27621088797138	5.90334443613602	6.21463219564447	6.21668851446306	6.68184331183184	1.74025796155767	1.55730332368255e-08	1.74079428051645e-06
Merged-chr10-8505028-4	chr10	8505016	8505216	+	916.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177387, intron 1 of 7)	intron (NM_177387, intron 1 of 7)	13709.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-58806118-4	chr9	58806009	58806209	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17403.0	NM_001081192	330953.0	Mm.151967	NM_001081192	ENSMUSG00000032338	Hcn4	Bcng3|Hcn3	hyperpolarization-activated, cyclic nucleotide-gated K+ 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-121267154-3	chr5	121267008	121267208	+	869.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181421, intron 7 of 75)	B1F|SINE|Alu	46889.0	NM_181421	269700.0	Mm.184589	NM_181421	ENSMUSG00000042744	Hectd4	A130010L24|AU042671|BC019639|EG545802|Gm15800|mKIAA0614	HECT domain E3 ubiquitin protein ligase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-23040355-4	chr2	23040241	23040441	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001331044)	promoter-TSS (NM_001331044)	-100.0	NM_145994	11308.0	Mm.205647	NM_007380	ENSMUSG00000058835	Abi1	E3B1|NAP1|Ssh3bp1|abi-1	abl-interactor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-80759892-4	chr1	80759832	80760032	+	821.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1379.0	NM_175291	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-78006799-4	chr9	78006707	78006907	+	793.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45151.0	NM_008103	14531.0	Mm.1400	NM_008103	ENSMUSG00000023333	Gcm1	GCMa|Gcm-rs2|Gcm1-rs1|glide	glial cells missing homolog 1	protein-coding	1.40229052444501	2.09100886699205	2.01732876101728	1.74196042657851	1.77489342274744	1.5618383272546	1.80637885182178	1.09143123191623	-0.775037997701024	0.479040099725079	0.928092227925527
Merged-chr7-45865453-2	chr7	45865353	45865553	+	614.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008172, intron 1 of 11)	intron (NM_008172, intron 1 of 11)	1228.0	NM_008172	14814.0	Mm.322594	NM_008172	ENSMUSG00000002771	Grin2d	GluN2D|NMDAR2D|NR2D	glutamate receptor, ionotropic, NMDA2D (epsilon 4)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-30031242-4	chr19	30031115	30031315	+	975.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144873, intron 1 of 15)	CpG	702.0	NM_144873	109113.0	Mm.313364	NM_144873	ENSMUSG00000024817	Uhrf2	2310065A22Rik|AI426270|AW214556|D130071B19Rik|Nirf	ubiquitin-like, containing PHD and RING finger domains 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-105794568-1	chr3	105794468	105794668	+	588.0	f1_balb.idr	intron (NM_145541, intron 1 of 7)	intron (NM_145541, intron 1 of 7)	6813.0	NM_145541	109905.0	Mm.101922	NM_145541	ENSMUSG00000068798	Rap1a	AI848598|G-22K|Krev-1|Rap1	RAS-related protein 1a	protein-coding	0.828440137428286	1.32572123707758	0.428737867791801	0.421466958849291	1.04288169541033	0.987843426206196	0.430805251294199	0.422741631144365	-0.278056199512441	0.875920293087535	1
Merged-chr2-30809480-2	chr2	30809388	30809588	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356433, intron 1 of 3)	B2_Mm2|SINE|B2	1305.0	NM_001356437	66617.0	Mm.33167	NM_170592	ENSMUSG00000026857	Ntmt1	2610205E22Rik|AL033331|AL033332|Mettl11a|NTM1A	N-terminal Xaa-Pro-Lys N-methyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-151570541-2	chr1	151570441	151570641	+	999.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022018)	promoter-TSS (NM_022018)	-832.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165322522-2	chr2	165322422	165322622	+	826.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_080287, intron 1 of 20)	intron (NM_080287, intron 1 of 20)	-1696.0	NM_001302752	140579.0	Mm.35064	NM_080287	ENSMUSG00000017670	Elmo2	1190002F24Rik|CED-12	engulfment and cell motility 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117657529-3	chr11	117657443	117657643	+	775.06665	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198022, intron 1 of 21)	intron (NM_198022, intron 1 of 21)	3254.0	NM_198022	217351.0	Mm.40272	NM_198022	ENSMUSG00000025571	Tnrc6c	9930033H14Rik|mKIAA1582	trinucleotide repeat containing 6C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-32281777-4	chr14	32281667	32281867	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011960, intron 15 of 17)	intron (NM_011960, intron 15 of 17)	-40252.0	NM_001081130	239017.0	Mm.318302	NM_001081130	ENSMUSG00000021913	Ogdhl	-	oxoglutarate dehydrogenase-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-8806623-2	chr19	8806523	8806723	+	624.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4093.0	NM_001098237	75291.0	Mm.23423	NM_133759	ENSMUSG00000071661	Zbtb3	4930563M09Rik	zinc finger and BTB domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-100576106-4	chr13	100576007	100576207	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23389.0	NM_001360539	18260.0	Mm.4807	NM_008756	ENSMUSG00000021638	Ocln	AI503564|Ocl	occludin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-16433669-2	chr5	16433569	16433769	+	676.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-119826.0	NM_001289460	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-102244874-2	chr7	102244777	102244977	+	788.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_019566, intron 1 of 1)	intron (NM_019566, intron 1 of 1)	5241.0	NM_019566	56212.0	Mm.259795	NM_019566	ENSMUSG00000073982	Rhog	2810426G09Rik|Arhg|Sid10750	ras homolog family member G	protein-coding	1.83627885896022	0.971373603831679	0.944190290861338	1.83519279597365	1.47709888685109	1.99175547658146	0.950292126104948	2.88753405644528	1.46533925250327	0.238342375744573	0.734898554874698
Merged-chr5-144253082-2	chr5	144252982	144253182	+	559.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163709, intron 1 of 2)	RMER12C|LTR|ERVK	-2143.0	NM_018772	55950.0	Mm.38011	NM_018772	ENSMUSG00000047843	Bri3	I3	brain protein I3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100966426-2	chr7	100966327	100966527	+	746.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2061.0	NM_183168	233571.0	Mm.235193	NM_183168	ENSMUSG00000048779	P2ry6	2010204J23Rik|P2Y6	pyrimidinergic receptor P2Y, G-protein coupled, 6	protein-coding	-0.700064241511417	-0.186671140929496	-0.692852367725508	-0.695563882069579	-0.699394869705802	-0.177296101845517	-0.692077155152847	-0.695090216270211	0.0394491945098347	0.989215944639676	1
Merged-chr5-146795056-4	chr5	146794971	146795171	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011669)	promoter-TSS (NM_011669)	-115.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	4.52199042888467	4.21786356578809	4.20712185081652	4.26100943739124	4.78303456115188	4.24762342081454	3.81418867267786	4.28157204553515	0.0318632780384461	0.938424734293352	0.998431161219273
Merged-chr7-88054418-4	chr7	88054307	88054507	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081414, intron 8 of 9)	intron (NM_001081414, intron 8 of 9)	-223678.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-45736870-4	chr17	45736792	45736992	+	883.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152153, intron 1 of 4)	(CG)n|Simple_repeat|Simple_repeat	2386.0	NR_152153	433111.0	Mm.213441	NR_152153	ENSMUSG00000097727	F630040K05Rik	-	RIKEN cDNA F630040K05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-7226727-4	chr19	7226611	7226811	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_027643, exon 8 of 8)	3' UTR (NM_027643, exon 8 of 8)	-9095.0	NM_007750	12868.0	Mm.14022	NM_007750	ENSMUSG00000035885	Cox8a	COX8L	cytochrome c oxidase subunit VIIIa	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-59735865-4	chr9	59735743	59735943	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001172071, exon 3 of 3)	3' UTR (NM_001172071, exon 3 of 3)	14806.0	NM_001172069	71599.0	Mm.279070	NM_027838	ENSMUSG00000051705	Senp8	9130010J17Rik|AU020827|Den1|Nedp1|Prsc2	SUMO/sentrin specific peptidase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-58776821-2	chr18	58776720	58776920	+	760.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-59543.0	NM_175506	240322.0	Mm.71963	NM_175506	ENSMUSG00000053441	Adamts19	4831407I23Rik|AU015154|D230034E10Rik	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-29431390-2	chr17	29431293	29431493	+	849.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59652.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	0.463115291482459	0.515533276572983	2.01688130875676	0.48579286238442	1.54054109313467	0.519195861746715	1.4100823560068	0.488118856741223	-0.0810992154171598	0.980265408340528	0.998431161219273
Merged-chr7-126628213-1	chr7	126628113	126628313	+	634.666687	f0_c57.idr	Intergenic	Intergenic	-2743.0	NM_019738	56312.0	Mm.18742	NM_019738	ENSMUSG00000030717	Nupr1	2310032H04Rik|Com1|p8	nuclear protein transcription regulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-54440394-2	chr11	54440294	54440494	+	570.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_173753, intron 1 of 17)	(TC)n|Simple_repeat|Simple_repeat	2215.0	NM_173753	216742.0	Mm.34087	NM_173753	ENSMUSG00000035992	Fnip1	A730024A03Rik|AI838773|AW557298	folliculin interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-17348344-4	chr12	17348248	17348448	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001008421)	promoter-TSS (NM_001008421)	-145.0	NM_001008421	217431.0	Mm.27536	NM_001008421	ENSMUSG00000061458	Nol10	Gm67	nucleolar protein 10	protein-coding	6.75514446027805	6.93304774073288	7.47898080704427	6.87233566509812	6.59021939063168	7.20452588606792	6.69364154485159	6.72944195917258	-0.229409294874423	0.270939569112861	0.774352775182494
Merged-chr6-31073483-3	chr6	31073490	31073690	+	727.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10497.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-105674816-4	chr3	105674702	105674902	+	874.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001039347)	TTS (NM_001039347)	12769.0	NM_017397	53975.0	Mm.272826	NM_017397	ENSMUSG00000027905	Ddx20	GEMIN3|dp103	DEAD (Asp-Glu-Ala-Asp) box polypeptide 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-123478575-8	chr9	123478484	123478684	+	945.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013860)	promoter-TSS (NM_013860)	-117.0	NM_013860	29806.0	Mm.10987	NM_013860	ENSMUSG00000025239	Limd1	AW822033|D9Ertd192e	LIM domains containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-111444991-3	chr11	111444901	111445101	+	633.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	378837.0	NM_008425	16518.0	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-84654181-2	chr12	84654081	84654281	+	776.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11285.0	NM_001033776	432677.0	Mm.311913	NM_001033776	ENSMUSG00000071235	Vrtn	7420416P09Rik	vertebrae development associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-51565273-1	chr11	51565173	51565373	+	581.0	f0_balb.idr	intron (NM_153393, intron 15 of 28)	intron (NM_153393, intron 15 of 28)	-19484.0	NM_028398	72947.0	Mm.256875	NM_028398	ENSMUSG00000020359	Phykpl	2900006B13Rik|Agxt2l2	5-phosphohydroxy-L-lysine phospholyase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-17812637-1	chr14	17812537	17812737	+	692.0	f0_balb.idr	intron (NM_001113417, intron 1 of 9)	L1M5|LINE|L1	151677.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-89630259-1	chr10	89630159	89630359	+	555.0	f1_c57bl6.idr	Intergenic	Intergenic	-9010.0	NM_182959	216227.0	Mm.233921	NM_182959	ENSMUSG00000019935	Slc17a8	BC042593|Vglut3	solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 8	protein-coding	0.593280852559573	1.07355757260246	0.334737402939032	0.639907454856053	0.904346349227396	0.544230309017854	0.336334146428563	0.330120818347704	-0.783793386328763	0.658349309934691	1
Merged-chr17-75536793-3	chr17	75536683	75536883	+	768.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_133747)	TTS (NM_133747)	15163.0	NM_133747	72722.0	Mm.24641	NM_133747	ENSMUSG00000002017	Fam98a	2810405J04Rik|AL024114	family with sequence similarity 98, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-89403262-2	chr7	89403166	89403366	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360746, intron 1 of 14)	intron (NM_001360746, intron 1 of 14)	956.0	NM_001360746	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	-0.923772569202306	-0.562996481634052	-0.918041984271448	-0.920200216076014	-0.447857768560961	-0.907094860507239	-0.917424159035726	-0.919823515043604	0.61021457578152	0.845890823634888	1
Merged-chr17-65864882-3	chr17	65864793	65864993	+	580.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198949, intron 2 of 9)	intron (NM_001198949, intron 2 of 9)	20030.0	NM_001198949	19765.0	Mm.17009	NM_009067	ENSMUSG00000024096	Ralbp1	RLIP76|Rip1	ralA binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-126478669-2	chr2	126478569	126478769	+	762.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359975, intron 3 of 27)	intron (NM_001359975, intron 3 of 27)	12884.0	NM_001080944	241633.0	Mm.222235	NM_001080944	ENSMUSG00000060131	Atp8b4	Im	ATPase, class I, type 8B, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117775729-4	chr11	117775639	117775839	+	996.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_154387, exon 6 of 19)	non-coding (NR_154387, exon 6 of 19)	3909.0	NR_154387	217353.0	Mm.286963	NM_145439	ENSMUSG00000025572	Tmc6	D11Ertd204e|EVER1	transmembrane channel-like gene family 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-6391729-4	chr11	6391616	6391816	+	960.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3409.0	NM_001005867	52915.0	Mm.1144	NM_028601	ENSMUSG00000041164	Zmiz2	Zimp7	zinc finger, MIZ-type containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-38946679-1	chr6	38946579	38946779	+	543.0	f1_balb.idr	intron (NM_011539, intron 1 of 12)	L1_Mus3|LINE|L1	27693.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-86533493-2	chr1	86533393	86533593	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6936.0	NM_001360830	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-53512797-2	chr5	53512697	53512897	+	568.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-42982.0	NM_001080928	19664.0	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-62979777-2	chr14	62979677	62979877	+	774.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037751, intron 1 of 1)	intron (NM_001037751, intron 1 of 1)	4733.0	NM_001037751	432867.0	Mm.99387	NM_001037751	ENSMUSG00000075574	Defb48	Defb42|EG432867	defensin beta 48	protein-coding	0.0243558301538464	-0.127242099924261	-0.0110527889682385	-0.307382049800217	0.0320935735075526	-0.30049119820259	-0.303972089630406	-0.306920332651773	-1.14450078462277	0.629266960428832	1
Merged-chr16-94314788-2	chr16	94314688	94314888	+	801.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1225.0	NM_139145	110948.0	Mm.30921	NM_139145	ENSMUSG00000040820	Hlcs	410I21.SP6|D16Jhu34	holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-60644081-1	chr13	60643981	60644181	+	656.0	f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	41870.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	0.599903231153125	0.232322232138535	0.225452714586833	0.868142694189445	0.21259117204832	0.2338672878306	0.413738803305639	0.966389676708053	-0.0588878035096141	0.975941498292593	1
Merged-chr3-142273428-4	chr3	142273353	142273553	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001190854, intron 8 of 12)	intron (NM_001190854, intron 8 of 12)	-104028.0	NM_001277216	12167.0	Mm.39089	NM_007560	ENSMUSG00000052430	Bmpr1b	AI385617|ALK-6|AV355320|Acvrlk6|Alk6|BMPR-1B|BMPR-IB|CFK-43a|SKR6	bone morphogenetic protein receptor, type 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-24979620-2	chr16	24979520	24979720	+	574.25	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001145952, exon 12 of 12)	3' UTR (NM_001145952, exon 12 of 12)	-80019.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35924503-1	chr17	35924403	35924603	+	559.0	f1_c57bl6.idr	intron (NM_001357740, intron 4 of 18)	intron (NM_001357740, intron 4 of 18)	5231.0	NM_001357740	52040.0	Mm.29385	NM_175934	ENSMUSG00000039220	Ppp1r10	2610025H06Rik|Cat53|D17Ertd808e|Fb19|Pnuts	protein phosphatase 1, regulatory subunit 10	protein-coding	-1.70147049771789	-1.81273664167395	-1.82168966216065	-1.68817205465363	-1.84026411453382	-1.81079648478606	-1.81966289456708	-1.8277275275835	-1.35489344311002	0.70088362784012	1
Merged-chr7-74987318-2	chr7	74987218	74987418	+	629.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-42893.0	NR_131122	75205.0	Mm.399304	NR_131122	ENSMUSG00000108803	4930533N22Rik	Gm44904	RIKEN cDNA 4930533N22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-33460510-2	chr4	33460410	33460610	+	952.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001305273, intron 14 of 15)	intron (NM_001305273, intron 14 of 15)	22429.0	NR_106198	102465904.0		NR_106198	ENSMUSG00000098310	Mir8118	Gm27954|mmu-mir-8118	microRNA 8118	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-79033768-2	chr11	79033668	79033868	+	721.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045873, exon 6 of 6)	non-coding (NR_045873, exon 6 of 6)	10171.0	NR_045873	790910.0	Mm.440410	NR_045873		Gm11201	-	predicted gene 11201	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-86492919-4	chr1	86492817	86493017	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33640.0	NR_153834	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-26105552-6	chr16	26105466	26105666	+	763.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_173379, exon 1 of 15)	exon (NM_173379, exon 1 of 15)	218.0	NM_173379	210530.0	Mm.326869	NM_173379	ENSMUSG00000038168	P3h2	4832416N06|AW553532|Leprel1|Mlat4	prolyl 3-hydroxylase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16571428-1	chr7	16571328	16571528	+	557.0	f1_balb.idr	intron (NM_172739, intron 1 of 6)	intron (NM_172739, intron 1 of 6)	-42396.0	NR_136928	102634559.0	Mm.421602	NR_136928	ENSMUSG00000100583	Gm29443	-	predicted gene 29443	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-108067527-2	chr4	108067427	108067627	+	588.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011327, intron 12 of 15)	intron (NM_011327, intron 12 of 15)	-19830.0	NR_105823	102465213.0		NR_105823	ENSMUSG00000098980	Mir6397	Gm28004|mmu-mir-6397	microRNA 6397	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-184448902-2	chr1	184448802	184449002	+	661.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	108789.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-81336297-2	chr7	81336197	81336397	+	758.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8937.0	NM_009092	20068.0	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-116845027-4	chr3	116844921	116845121	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14546.0	NM_001113478	20321.0	Mm.66293	NM_009146	ENSMUSG00000033386	Frrs1	AI131732|Sdfr2	ferric-chelate reductase 1	protein-coding	1.38065763874236	0.682424310308102	0.670318357414908	1.47475052914785	1.62554180110452	0.910064400704403	0.67300446463443	1.01815935239569	0.00876950133285985	0.995439970297792	0.998491424894068
Merged-chr3-38114626-4	chr3	38114510	38114710	+	970.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	93509.0	NR_040541	71342.0	Mm.410782	NR_040541	ENSMUSG00000106002	5430434I15Rik	-	RIKEN cDNA 5430434I15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-118553244-3	chr1	118553143	118553343	+	636.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359330, intron 30 of 39)	intron (NM_001359330, intron 30 of 39)	-74702.0	NM_023755	81879.0	Mm.24621	NM_023755	ENSMUSG00000026380	Tfcp2l1	1810030F05Rik|4932442M07Rik|AA575098|Cp2l1|Crtr-1|D930018N21Rik|LBP-9|Tcfcp2l1	transcription factor CP2-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-84157005-3	chr17	84156940	84157140	+	740.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30907.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-92049147-2	chr1	92049047	92049247	+	644.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_207225, intron 3 of 26)	intron (NM_207225, intron 3 of 26)	131194.0	NM_207225	208727.0	Mm.318567	NM_207225	ENSMUSG00000026313	Hdac4	4932408F19Rik|HD4	histone deacetylase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-27096951-4	chr14	27096862	27097062	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134437, intron 11 of 12)	intron (NM_134437, intron 11 of 12)	-47031.0	NM_001289686	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	3.23739887640906	3.1492856237926	2.7355974162063	3.12860694605057	3.07036827762255	2.84983286049712	2.48892334839412	2.41345584793493	-0.629859014240654	0.343136083349237	0.843915000140038
Merged-chr5-90924188-2	chr5	90924087	90924287	+	659.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A2|LTR|ERVL-MaLR	-7009.0	NM_026788	665563.0	Mm.153030	NM_026788	ENSMUSG00000029376	Mthfd2l	1110019K23Rik|C630010D07Rik	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2-like	protein-coding	-0.719983900865948	-0.660777415357816	-0.853782516012365	-0.855981080929078	-0.859077902880822	-0.846002858312917	-0.853152947677063	-0.327664884974003	1.02989793862754	0.719673076023058	1
Merged-chr18-46448524-2	chr18	46448424	46448624	+	820.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	17292.0	NR_045438	72076.0	Mm.82766	NM_028086		Mospd4	2010013H21Rik	motile sperm domain containing 4	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80147987-4	chr10	80147891	80148091	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021565)	promoter-TSS (NM_021565)	-281.0	NM_001305798	59090.0	Mm.143813	NM_021565	ENSMUSG00000035621	Midn	3000003C15Rik	midnolin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-84523638-4	chr2	84523564	84523764	+	999.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16791.0	NR_046046	672763.0	Mm.491046	NR_046046	ENSMUSG00000087362	Gm13710	-	predicted gene 13710	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-77791367-3	chr12	77791214	77791414	+	757.857178	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	AT_rich|Low_complexity|Low_complexity	381173.0	NM_001252616	53618.0	Mm.35628	NM_016893	ENSMUSG00000021065	Fut8	-	fucosyltransferase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-38095915-1	chr7	38095815	38096015	+	547.0	f1_c57bl6.idr	Intergenic	Intergenic	11575.0	NM_007633	12447.0	Mm.16110	NM_007633	ENSMUSG00000002068	Ccne1	AW538188|CycE1	cyclin E1	protein-coding	0.122913408539926	0.117149806343802	-0.230908621389362	0.376653660100922	-0.238879397962757	-0.225640426754486	-0.229961712926421	-0.233639158805012	-3.67788854489698	0.119780640642039	1
Merged-chr10-82814261-4	chr10	82814164	82814364	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038042, intron 1 of 2)	intron (NR_038042, intron 1 of 2)	2141.0	NR_038042	70003.0	Mm.48789	NR_038042	ENSMUSG00000056821	1700028I16Rik	-	RIKEN cDNA 1700028I16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-90694656-4	chr5	90694564	90694764	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54137.0	NM_001310656	73246.0	Mm.30172	NM_028478	ENSMUSG00000029370	Rassf6	1600016B17Rik	Ras association (RalGDS/AF-6) domain family member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-130179376-4	chr2	130179318	130179518	+	980.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009225)	promoter-TSS (NM_009225)	-54.0	NM_009225	20638.0	Mm.88216	NM_009225	ENSMUSG00000027404	Snrpb	AL024368|AU018828|SM-B|SM11|SMB|SNRNP-B	small nuclear ribonucleoprotein B	protein-coding	3.98199127020867	3.89564093762924	3.76321539765957	4.07350448308949	4.60482269600274	4.81233213720407	4.62759816492572	3.90087201922427	0.779353658180708	0.0635085036993482	0.375541696046961
Merged-chr12-32487047-2	chr12	32486947	32487147	+	618.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	108258.0	NM_001162903	72123.0	Mm.341352	NM_028111	ENSMUSG00000090946	Ccdc71l	2010109K11Rik|AV375874	coiled-coil domain containing 71 like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-135630144-4	chr3	135630053	135630253	+	963.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008689, intron 6 of 24)	intron (NM_008689, intron 6 of 24)	61394.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	2.1544384592065	2.76067678388822	1.657780603956	2.76320518379184	2.17242302547277	2.78114371253336	1.66931268066564	2.77740195734216	0.0357163644721965	0.967424671351992	0.998431161219273
Merged-chr10-67180658-2	chr10	67180558	67180758	+	563.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_207221, intron 2 of 25)	intron (NM_207221, intron 2 of 25)	-5092.0	NM_001242396	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167357078-4	chr2	167356972	167357172	+	767.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7894.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-6117996-2	chr8	6117902	6118102	+	779.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-1012715.0	NM_011388	20494.0	Mm.3500	NM_011388	ENSMUSG00000023073	Slc10a2	9130221J18Rik|AI605518|ASBT|IBAT|ISBT	solute carrier family 10, member 2	protein-coding	1.80423381906697	1.64715684731069	2.55558352039345	2.01534528186898	1.71576023156023	0.996075190866231	0.972815281015435	0.952261153072586	-2.67621765755737	0.0319354553383151	0.247627052875337
Merged-chr15-27671818-4	chr15	27671734	27671934	+	970.616699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198301, intron 1 of 6)	intron (NM_198301, intron 1 of 6)	9708.0	NM_001242424	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-37377502-2	chr19	37377402	37377602	+	578.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010615, intron 1 of 21)	PB1|SINE|Alu	1099.0	NM_010615	16551.0	Mm.42203	NM_010615	ENSMUSG00000012443	Kif11	Eg5|Kif8|Kifl1|Knsl1	kinesin family member 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-29944692-3	chr16	29944594	29944794	+	904.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34430.0	NR_037689	328657.0	Mm.425982	NM_001033403		Gm1968	-	predicted gene 1968	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-127310886-2	chr2	127310786	127310986	+	577.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25273.0	NM_010090	13537.0	Mm.4729	NM_010090	ENSMUSG00000027368	Dusp2	PAC1	dual specificity phosphatase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97189854-2	chr11	97189754	97189954	+	741.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2B|LTR|ERVL	-1962.0	NM_008379	16211.0	Mm.251013	NM_008379	ENSMUSG00000001440	Kpnb1	AA409963|IPOB|Impnb	karyopherin (importin) beta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-86394482-4	chr1	86394388	86394588	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5127.0	NM_001319227	14767.0	Mm.389159	NM_010341	ENSMUSG00000026237	Nmur1	FM-3|Gpr66|NMU-R1|NMU1R|NmU-R	neuromedin U receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-95975001-2	chr15	95974901	95975101	+	567.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001253813, exon 21 of 21)	3' UTR (NM_001253813, exon 21 of 21)	104552.0	NR_126493	402773.0	Mm.210567	NM_001033483	ENSMUSG00000078925	D030018L15Rik	-	nuclear receptor coactivator 2 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-156164590-2	chr4	156164490	156164690	+	659.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_021604)	TTS (NM_021604)	32898.0	NM_021604	11603.0	Mm.273098	NM_021604	ENSMUSG00000041936	Agrn	Agrin|nmf380	agrin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-156673402-1	chr1	156673302	156673502	+	627.0	f1_c57bl6.idr	intron (NM_023141, intron 2 of 5)	intron (NM_023141, intron 2 of 5)	937.0	NM_023141	30935.0	Mm.206737	NM_023141	ENSMUSG00000060519	Tor3a	Adir	torsin family 3, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-151422376-4	chr1	151422283	151422483	+	687.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025819, intron 2 of 19)	intron (NM_025819, intron 2 of 19)	6052.0	NM_025819	66875.0	Mm.290905	NM_025819	ENSMUSG00000052748	Swt1	1200016B10Rik|C1orf26	SWT1 RNA endoribonuclease homolog (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-90967672-3	chr13	90967579	90967779	+	708.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025770, intron 5 of 7)	intron (NM_025770, intron 5 of 7)	44557.0	NM_024175	66475.0	Mm.306302	NM_024175	ENSMUSG00000049517	Rps23	2410044J15Rik	ribosomal protein S23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-149563635-2	chr6	149563535	149563735	+	906.6666869999999	f1_balb.idr|f1_c57bl6.idr	TTS (NM_009753)	TTS (NM_009753)	-2447.0	NM_001360951	436100.0		NM_001360951		Gm21814	6620401J10Rik	predicted gene, 21814	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-104535635-5	chr8	104535571	104535771	+	894.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301164, intron 1 of 6)	intron (NM_001301164, intron 1 of 6)	971.0	NM_001301164	12354.0	Mm.129265	NM_053070	ENSMUSG00000031883	Car7	AV343731|Ca7	carbonic anhydrase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-122026423-1	chr2	122026323	122026523	+	995.0	f1_c57bl6.idr	Intergenic	Intergenic	-2157.0	NM_144545	78655.0	Mm.458184	NM_144545	ENSMUSG00000027236	Eif3j1	1810016I04Rik|2700079K05Rik|AA409117|AA409446|C78575|Eif3j|Eif3j-1|Eif3j-2|Eif3j2|Eif3s1|eIF-3-alpha-A|eIF-3-alpha-B|eIF3-alpha|eIF3-p35|eIF3j-A|eIF3j-B	eukaryotic translation initiation factor 3, subunit J1	protein-coding	0.481148207467714	0.841108560291255	0.230502330619839	0.751945723910984	0.694879753434669	0.238093744946362	0.231868393501037	0.226559134274663	-1.55433670625177	0.428393554929722	1
Merged-chr7-28344919-2	chr7	28344819	28345019	+	795.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-5770.0	NM_013647	20055.0	Mm.702	NM_013647	ENSMUSG00000037563	Rps16	AA420385|AI317031	ribosomal protein S16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-20750073-4	chr18	20749979	20750179	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3675.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-54145090-2	chr11	54144990	54145190	+	704.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44166.0	NM_011031	18452.0	Mm.3705	NM_011031	ENSMUSG00000018906	P4ha2	AA407196|C76437|P4hl	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-7936720-4	chr10	7936630	7936830	+	955.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138667, intron 1 of 6)	intron (NM_138667, intron 1 of 6)	16335.0	NM_001359534	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-58288024-4	chr13	58287931	58288131	+	990.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001360894, exon 15 of 15)	exon (NM_001360894, exon 15 of 15)	-13843.0	NM_019832	56278.0	Mm.296625	NM_019832	ENSMUSG00000021552	Gkap1	42kDa|4933400B15Rik|D13Ertd340e|Gkap42	G kinase anchoring protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-27407899-2	chr3	27407799	27407999	+	711.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36548.0	NM_177330	208188.0	Mm.194721	NM_177330	ENSMUSG00000051136	Ghsr	C530020I22Rik|GHRP|GHS-R|Ghsr1a	growth hormone secretagogue receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116641937-2	chr11	116641837	116642037	+	648.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12376.0	NM_030206	114886.0	Mm.34598	NM_030206	ENSMUSG00000020810	Cygb	3110001K20Rik|HGb|Staap	cytoglobin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-57130973-4	chr16	57130879	57131079	+	826.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138599, intron 1 of 11)	intron (NM_138599, intron 1 of 11)	9265.0	NM_138599	28185.0	Mm.196933	NM_138599	ENSMUSG00000022752	Tomm70a	2610044B22Rik|D16Ium22|D16Ium22e|D16Wsu109e|Tom70|Tomm70|mKIAA0719	translocase of outer mitochondrial membrane 70A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-25042992-2	chr2	25042892	25043092	+	587.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_146251, intron 25 of 34)	intron (NM_146251, intron 25 of 34)	-11387.0	NM_001177654	56876.0	Mm.42956	NM_020276	ENSMUSG00000006476	Nsmf	Jacob|Nelf	NMDA receptor synaptonuclear signaling and neuronal migration factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105858702-4	chr8	105858599	105858799	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1834.0	NM_026532	68051.0	Mm.455474	NM_026532	ENSMUSG00000008450	Nutf2	2700067I02Rik|AI115459|AI413596|AW546000|Ntf2|Ntf3|PP15	nuclear transport factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-107940090-2	chr3	107939990	107940190	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008184, intron 7 of 7)	intron (NM_008184, intron 7 of 7)	3659.0	NM_008184	14867.0	Mm.458154	NM_008184	ENSMUSG00000068762	Gstm6	-	glutathione S-transferase, mu 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-138207094-4	chr4	138207006	138207206	+	904.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_172703)	TTS (NM_172703)	-9506.0	NM_001122896	15441.0	Mm.348429	NM_010470	ENSMUSG00000028759	Hp1bp3	Hp1bp74	heterochromatin protein 1, binding protein 3	protein-coding	3.46924709438403	2.68725884734619	3.41127741612033	4.16752683930091	4.49705898495563	4.08054264503056	4.20166207246827	4.85920706045709	1.23268727269504	0.0123138657448117	0.125987857765422
Merged-chr13-78162316-2	chr13	78162216	78162416	+	846.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163420, intron 8 of 8)	intron (NM_001163420, intron 8 of 8)	34133.0	NM_001347538	13865.0	Mm.439653	NM_010151	ENSMUSG00000069171	Nr2f1	COUP-TF1|COUP-TFI|COUPTFA|EAR-3|EAR3|Erbal3|SVP44|Tcfcoup1	nuclear receptor subfamily 2, group F, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135411876-2	chr4	135411776	135411976	+	737.875	f1_balb.idr|f1_c57bl6.idr	TTS (NM_022980)	TTS (NM_022980)	4757.0	NR_030481	735285.0		NR_030481	ENSMUSG00000076123	Mir700	Mirn700|mir-700|mmu-mir-700	microRNA 700	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-96279279-3	chr10	96279166	96279366	+	730.527771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53059.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-34826213-4	chr2	34826120	34826320	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013890)	promoter-TSS (NM_013890)	15.0	NM_001164770	30050.0	Mm.4465	NM_013890	ENSMUSG00000035949	Fbxw2	2700071L08Rik|FBW2|Fwd2|MD6	F-box and WD-40 domain protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-90420953-3	chr15	90420835	90421035	+	785.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	67225.0	NR_155426	102640415.0	Mm.394352	NR_155426	ENSMUSG00000116204	Gm36480	-	predicted gene, 36480	ncRNA	1.58522778164454	1.39103840040246	1.87127739555675	2.05332692086251	2.30049930013266	2.67911851794566	1.35826277311528	1.08281627372801	0.73649116422163	0.50329218217102	0.939787919021146
Merged-chr10-89800510-1	chr10	89800410	89800610	+	661.0	f1_balb.idr	intron (NM_029166, intron 12 of 20)	intron (NM_029166, intron 12 of 20)	55519.0	NM_029166	75089.0	Mm.268922	NM_029166	ENSMUSG00000019951	Uhrf1bp1l	2010319N22Rik|4930506D01Rik|AA589495|C80672|E030041M21Rik|mKIAA0701	UHRF1 (ICBP90) binding protein 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-92637506-2	chr7	92637409	92637609	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028665)	promoter-TSS (NM_028665)	-367.0	NM_028665	73845.0	Mm.73248	NM_028665	ENSMUSG00000041343	Ankrd42	4931426M20|4933417L02Rik|Ikbn	ankyrin repeat domain 42	protein-coding	0.9553934979564	0.788005842859672	0.919417764975231	0.567788518368872	1.3253237927188	0.586398578361393	1.29149917158111	0.746181424003364	1.09719255246435	0.473996203322147	1
Merged-chr2-128713727-2	chr2	128713638	128713838	+	880.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 1 of 18)	intron (NM_008587, intron 1 of 18)	14823.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	0.038039529009185	-0.476431600677096	-0.479776190540967	-0.198300386568903	-0.232628486913843	-0.475675106857001	-0.479040122994376	-0.481896084736215	-1.66219997927342	0.529524029096094	1
Merged-chr5-45580559-3	chr5	45580475	45580675	+	900.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_021416, exon 5 of 16)	exon (NM_021416, exon 5 of 16)	-58700.0	NR_102378	319251.0	Mm.402857	NR_102378	ENSMUSG00000097825	9630001P10Rik	-	RIKEN cDNA 9630001P10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-125386471-2	chr1	125386371	125386571	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49256.0	NM_001205386	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-82997913-4	chr6	82997811	82998011	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033079, intron 4 of 9)	intron (NM_033079, intron 4 of 9)	35560.0	NM_010070	13448.0	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-33280749-2	chr4	33280649	33280849	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29562.0	NM_011884	24018.0	Mm.240024	NM_011884	ENSMUSG00000028274	Rngtt	AU020997|HCE|MCE1	RNA guanylyltransferase and 5'-phosphatase	protein-coding	-1.00250420537372	-0.984126430401196	-0.996293518424774	-0.998795766628115	-0.850883418161482	-0.981489771670267	-0.993539156391212	-0.345956097206146	2.97099761780372	0.333931704018653	1
Merged-chr17-64685404-2	chr17	64685304	64685504	+	924.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008549, intron 12 of 21)	intron (NM_008549, intron 12 of 21)	-81707.0	NR_105051	101202683.0	Mm.393309	NR_105051		Dreh	-	down-regulated in hepatocellular carcinoma	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56116206-2	chr17	56116106	56116306	+	604.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077348, intron 3 of 7)	intron (NM_001077348, intron 3 of 7)	1092.0	NM_001077348	66968.0	Mm.254985	NM_025874	ENSMUSG00000011305	Plin5	2310076L09Rik|AI415325|AW109675|Lsdp5|MLDP|PAT-1	perilipin 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-34640797-4	chr19	34640716	34640916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008331)	promoter-TSS (NM_008331)	-73.0	NM_053217	112419.0	Mm.440727	NM_053217	ENSMUSG00000067297	Ifit1bl2	2010002M12Rik|AW412491|Ifit1b	interferon induced protein with tetratricopeptide repeats 1B like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-62032323-3	chr15	62032222	62032422	+	649.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5664.0	NR_132747	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72607071-2	chr6	72606971	72607171	+	644.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026159, intron 10 of 10)	intron (NM_026159, intron 10 of 10)	8443.0	NM_026159	67442.0	Mm.305108	NM_026159	ENSMUSG00000056666	Retsat	0610039N19Rik|C80029|MMT-7|Ppsig	retinol saturase (all trans retinol 13,14 reductase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-26140205-4	chr11	26140087	26140287	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027973, intron 1 of 5)	L1MA6|LINE|L1	-62053.0	NR_105791	102466154.0		NR_105791	ENSMUSG00000099015	Mir6372	Gm27358|mmu-mir-6372	microRNA 6372	ncRNA	5.16174288895392	5.98026418146017	5.44667668536306	5.31581040619663	4.43067488280709	5.58192782138358	5.48276428888801	4.98240336388224	-0.376132958859422	0.260366633443981	0.761428635017755
Merged-chr8-57427369-1	chr8	57427269	57427469	+	546.0	f0_balb.idr	Intergenic	C-rich|Low_complexity|Low_complexity	-28554.0	NM_009136	20284.0	Mm.12886	NM_009136	ENSMUSG00000031610	Scrg1	AW124307	scrapie responsive gene 1	protein-coding	0.143214376910984	0.170841533873107	0.161928216132126	0.887103799511287	0.470964685385889	0.172833361986171	0.163905134608841	1.31478924248437	1.24837227215521	0.537762252869884	1
Merged-chr9-40802254-3	chr9	40802153	40802353	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031165, intron 2 of 8)	intron (NM_031165, intron 2 of 8)	980.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	4.03932162105215	4.2094114586118	3.94602345381127	3.83846360616054	4.0706443224	4.23840209141269	4.10617754980168	3.71430791771936	0.0413334223661478	0.924273468004576	0.998431161219273
Merged-chr2-124522420-2	chr2	124522320	124522520	+	552.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290997, intron 5 of 20)	intron (NM_001290997, intron 5 of 20)	-87876.0	NM_199238	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80754230-4	chr7	80754115	80754315	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016721, intron 11 of 37)	intron (NM_016721, intron 11 of 37)	49116.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	3.7287977203454	4.77544666281916	5.02631901707901	4.83276843195229	3.61354220813471	4.54839054133411	5.39246021963076	4.27424649494548	-0.0777237787842054	0.866527883403996	0.998431161219273
Merged-chr10-118121926-2	chr10	118121826	118122026	+	853.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19861.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	-1.13146769101922	-1.10460487238646	-1.11735372523027	-1.12713099301154	-1.13082009585647	-0.300663969208598	-1.11446766439333	-1.12595147812057	3.06518455575839	0.353555291099784	1
Merged-chr10-9908131-4	chr10	9908041	9908241	+	967.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7101.0	NM_001081344	78808.0	Mm.331751	NM_030191	ENSMUSG00000019790	Stxbp5	0710001E20Rik|4930565N16Rik|AW742610|LGL3|mKIAA1006	syntaxin binding protein 5 (tomosyn)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-3261354-2	chr16	3261254	3261454	+	582.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-331044.0	NM_146860	258859.0	Mm.377723	NM_146860	ENSMUSG00000051003	Olfr161	MOR131-1|OR912-47M6	olfactory receptor 161	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-12963592-4	chr10	12963470	12963670	+	999.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029075, intron 1 of 2)	intron (NM_029075, intron 1 of 2)	689.0	NM_029075	74732.0	Mm.248648	NM_029075	ENSMUSG00000039232	Stx11	5830405C08Rik	syntaxin 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-34800620-4	chr2	34800534	34800734	+	944.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145522)	promoter-TSS (NM_145522)	-722.0	NM_145522	227746.0	Mm.158705	NM_145522	ENSMUSG00000070953	Rabepk	8430412M01Rik|9530020D24Rik|AV073337|C87311|Rab9p40	Rab9 effector protein with kelch motifs	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-73647620-4	chr16	73647522	73647722	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	694445.0	NR_030464	751561.0		NR_030464	ENSMUSG00000104758	Mir691	Mirn691|mir-691|mmu-mir-691	microRNA 691	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-4236433-3	chr18	4236321	4236521	+	849.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	70589.0	NM_026092	67328.0	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-75155071-4	chr8	75154974	75155174	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45565.0	NM_008566	17218.0	Mm.5048	NM_008566	ENSMUSG00000005410	Mcm5	AA617332|AI324988|AL033333|Cdc46|Mcmd5|P1-CDC46	minichromosome maintenance complex component 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-59997592-2	chr1	59997492	59997692	+	764.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001316694, exon 10 of 11)	exon (NM_001316694, exon 10 of 11)	45530.0	NM_001357296	70375.0	Mm.17834	NM_027407	ENSMUSG00000026018	Ica1l	1700030B17Rik|Als2cr15|b2b3465Clo	islet cell autoantigen 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-56445903-2	chr18	56445803	56446003	+	655.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026240, intron 1 of 13)	intron (NM_026240, intron 1 of 13)	13771.0	NM_026240	107022.0	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|Gramd2b|NS3TP2	GRAM domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101392065-2	chr7	101391965	101392165	+	856.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001040111, intron 13 of 33)	intron (NM_001040111, intron 13 of 33)	-2323.0	NM_198096	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-79936331-1	chr3	79936231	79936431	+	789.599976	f0_balb.idr	intron (NM_133187, intron 2 of 3)	intron (NM_133187, intron 2 of 3)	50401.0	NM_133187	68659.0	Mm.427274	NM_133187	ENSMUSG00000027955	Fam198b	1110032E23Rik|2210419I08Rik|AV011458|Ened	family with sequence similarity 198, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-11689095-4	chr11	11688995	11689195	+	968.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025597, intron 1 of 7)	intron (NM_001025597, intron 1 of 7)	-1082.0	NM_001301865	22778.0	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-77836925-4	chr14	77836793	77836993	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025384, intron 5 of 5)	intron (NM_025384, intron 5 of 5)	-37925.0	NM_001033440	380920.0	Mm.297771	NM_001033440	ENSMUSG00000075512	Gm1587	-	predicted gene 1587	protein-coding	6.58298617253989	6.75204683176132	6.73885934862482	6.40078112544415	5.65922658978512	6.3525248387611	5.66290518024773	5.78611142291864	-0.800158984757592	0.0004363083642177	0.0100156143250331
Merged-chr11-101449963-2	chr11	101449863	101450063	+	862.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_027320, intron 1 of 6)	B2_Mm1t|SINE|B2	1551.0	NM_027320	70110.0	Mm.45558	NM_027320	ENSMUSG00000010358	Ifi35	2010008K16Rik|AW986054|IFP35|ifi-35	interferon-induced protein 35	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-121389915-3	chr5	121389807	121390007	+	885.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-4292.0	NM_172275	231712.0	Mm.20488	NM_172275	ENSMUSG00000042726	Trafd1	1110008K06Rik|Fln29	TRAF type zinc finger domain containing 1	protein-coding	2.03971711710391	2.9480252786596	2.0817652888552	1.87908932797705	2.05673810220901	2.43217419900313	1.31779234296725	2.27623936816731	-0.540208308711374	0.567395846500957	0.962562732139494
Merged-chr15-58705518-4	chr15	58705458	58705658	+	982.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	117869.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84872845-2	chr8	84872743	84872943	+	639.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_031759, intron 2 of 3)	CpG	585.0	NM_001168244	71846.0	Mm.229128	NM_027954	ENSMUSG00000003824	Syce2	1700013H19Rik|AA407907|Cesc1	synaptonemal complex central element protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-181138889-3	chr1	181138778	181138978	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026171, intron 4 of 22)	intron (NM_026171, intron 4 of 22)	5326.0	NM_026171	67459.0	Mm.263464	NM_026171	ENSMUSG00000026516	Nvl	1200009I24Rik	nuclear VCP-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-73143336-6	chr14	73143223	73143423	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033185, intron 1 of 15)	CpG	538.0	NR_033185	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-46450532-4	chr6	46450420	46450620	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004357, intron 12 of 23)	intron (NM_001004357, intron 12 of 23)	-793876.0	NM_025771	66797.0	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-44604933-4	chr10	44604771	44604971	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-146123.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-70829801-4	chr17	70829718	70829918	+	976.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER45B|DNA|hAT-Tip100	16959.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-17904827-2	chr17	17904727	17904927	+	816.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17003.0	NM_008039	14289.0	Mm.378918	NM_008039	ENSMUSG00000052270	Fpr2	E330010I07Rik|Fpr-rs2	formyl peptide receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-21237882-3	chr11	21237754	21237954	+	889.599976	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-1178.0	NM_139061	245944.0	Mm.170103	NM_139061	ENSMUSG00000020128	Vps54	Hcc8|Vps54l|mSLP8|wr	VPS54 GARP complex subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90478311-4	chr2	90478213	90478413	+	998.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	L1MB5|LINE|L1	861.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-124685414-2	chr2	124685314	124685514	+	769.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31833.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-84837839-2	chr1	84837739	84837939	+	743.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_133975, intron 1 of 40)	intron (NM_133975, intron 1 of 40)	1465.0	NM_133975	14897.0	Mm.209265	NM_133975	ENSMUSG00000026219	Trip12	1110036I07Rik|6720416K24Rik|AA410158|Gtl6|TRIP-12	thyroid hormone receptor interactor 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53122896-1	chr4	53122796	53122996	+	584.0	f1_c57bl6.idr	intron (NM_013454, intron 5 of 49)	intron (NM_013454, intron 5 of 49)	36999.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	1.9832873825513	1.88406487315158	2.27363257600206	2.75703438255504	1.99898020071581	1.89670899194275	2.29113544121486	2.77102126219462	0.0351356500054608	0.967913316275798	0.998431161219273
Merged-chr10-66818978-2	chr10	66818878	66819078	+	621.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	101406.0	NR_138560	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-5872253-4	chr15	5872165	5872365	+	972.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	172439.0	NR_155428	105245876.0	Mm.128197	NR_155428		Gm41259	-	predicted gene, 41259	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101082474-7	chr11	101082351	101082551	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001305982)	promoter-TSS (NM_001305982)	-114.0	NM_001305982	71743.0	Mm.182271	NM_027896	ENSMUSG00000001755	Coasy	1300003G02Rik|Dpck|Ppat|Ukr1	Coenzyme A synthase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-52905917-2	chr6	52905817	52906017	+	844.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173406, intron 1 of 4)	intron (NM_173406, intron 1 of 4)	3703.0	NM_001168277	231986.0	Mm.386865	NM_173406	ENSMUSG00000063568	Jazf1	AI591476|C820002C15|Jaz1|Tip27	JAZF zinc finger 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-57705118-2	chr6	57705018	57705218	+	554.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133737, intron 1 of 8)	Lx3C|LINE|L1	2663.0	NM_133737	71835.0	Mm.274904	NM_133737	ENSMUSG00000062190	Lancl2	1700003F10Rik	LanC (bacterial lantibiotic synthetase component C)-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-63907311-5	chr7	63907202	63907402	+	822.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021366, intron 1 of 1)	B1_Mur3|SINE|Alu	-9555.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	0.554122158693967	1.15539819790171	0.280892038087321	0.274790264788098	0.879442412655291	0.676292180049234	0.282629876029397	0.275858818824572	-0.387881327397244	0.837142938855796	1
Merged-chr12-69683770-4	chr12	69683670	69683870	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER102b|DNA|hAT-Charlie	-1918.0	NM_001135559	20663.0	Mm.3770	NM_001135559	ENSMUSG00000034801	Sos2	SOS-2|mSOS-2	SOS Ras/Rho guanine nucleotide exchange factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-118775350-4	chr13	118775252	118775452	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008002, intron 1 of 2)	intron (NM_008002, intron 1 of 2)	60653.0	NM_008002	14165.0	Mm.317323	NM_008002	ENSMUSG00000021732	Fgf10	AEY17|BB213776|Fgf-10|Gsfaey17	fibroblast growth factor 10	protein-coding	6.97337613410117	7.02627852802741	6.85251854835291	6.19618338049901	7.43626330560936	7.53790896957932	7.24935070185349	6.97643938857489	0.545469186338741	0.0069791936433997	0.085040316858676
Merged-chr4-97775305-2	chr4	97775205	97775405	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001122952, intron 1 of 10)	intron (NM_001122952, intron 1 of 10)	-2321.0	NM_001122953	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-33905134-2	chr10	33905034	33905234	+	730.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162957)	promoter-TSS (NM_001162957)	23.0	NM_001162957	212892.0	Mm.131949	NM_001162957	ENSMUSG00000039552	Rsph4a	A230081C05|Rshl3	radial spoke head 4 homolog A (Chlamydomonas)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-173548788-2	chr2	173548676	173548876	+	555.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26184.0	NM_028158	72221.0	Mm.46132	NM_028158	ENSMUSG00000027518	1700021F07Rik	-	RIKEN cDNA 1700021F07 gene	protein-coding	-1.20406370813143	-1.56956373024278	-1.57884638916872	-1.58647144159385	-1.598104728449	-1.56755213932999	-1.57674499865798	-1.58510656085539	-1.70745470802464	0.626337835847419	1
Merged-chr16-58477776-4	chr16	58477688	58477888	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357433, intron 6 of 10)	RMER6C|LTR|ERVK	45638.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-115829598-2	chr4	115829469	115829669	+	840.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175308, intron 1 of 3)	RSINE1|SINE|B4	1477.0	NM_175308	100465.0	Mm.35571	NM_175308	ENSMUSG00000028709	Mob3c	AW822253|D130076I06Rik|Mobkl2c	MOB kinase activator 3C	protein-coding	-2.18292257394068	-2.15545247547656	-2.03304972317742	-2.17058342868585	-2.18099422382073	-2.1536522739386	-2.16187909550322	-2.16936197735154	-0.683654500252594	0.846597994014493	1
Merged-chr1-182484406-2	chr1	182484306	182484506	+	826.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009794, intron 9 of 20)	intron (NM_009794, intron 9 of 20)	33204.0	NM_009794	12334.0	Mm.19306	NM_009794	ENSMUSG00000026509	Capn2	AI326419|CALP80|Capa-2|Capa2|m-calpain|m-calpin	calpain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85508471-2	chr12	85508371	85508571	+	801.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MYSERV6-int|LTR|ERVK	34581.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132351560-2	chr4	132351460	132351660	+	754.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_003270)	TTS (NR_003270)	2126.0	NR_003270	399101.0	Mm.486919	NR_002904	ENSMUSG00000085241	Snhg3	Rnu17d|U17HG	small nucleolar RNA host gene 3	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-84594051-2	chr2	84593951	84594151	+	569.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	55429.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-88993781-4	chr11	88993694	88993894	+	948.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5609.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	4.043655817143	3.2677493920456	3.98519629757182	3.81806262049464	4.19951738246165	3.61229011523175	3.49257217339507	3.38434309500004	-0.139276350607856	0.782957038504914	0.998431161219273
Merged-chr19-48628775-2	chr19	48628675	48628875	+	567.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025696, intron 5 of 26)	intron (NM_025696, intron 5 of 26)	422750.0	NM_025696	66673.0	Mm.70980	NM_025696	ENSMUSG00000063434	Sorcs3	6330404A12Rik|AW045579	sortilin-related VPS10 domain containing receptor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85665581-2	chr12	85665481	85665681	+	751.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21139.0	NM_016767	53314.0	Mm.6672	NM_016767	ENSMUSG00000034266	Batf	B-ATF|SFA-2	basic leucine zipper transcription factor, ATF-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-87264773-2	chr1	87264673	87264873	+	668.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028889, intron 1 of 3)	CpG	420.0	NR_151447	98363.0	Mm.247951	NM_028889	ENSMUSG00000026255	Efhd1	4931430I01Rik|AI452351|PP3051|mitocalcin	EF hand domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-19691992-4	chr10	19691884	19692084	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20603.0	NM_172786	237313.0	Mm.234667	NM_172786	ENSMUSG00000020007	Il20ra	E230031K19	interleukin 20 receptor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-69884029-2	chr2	69883964	69884164	+	800.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_110977, intron 1 of 5)	B2_Mm2|SINE|B2	1551.0	NM_029280	75422.0	Mm.10508	NM_029280	ENSMUSG00000051730	Mettl5	2810410A08Rik	methyltransferase like 5	protein-coding	2.44288077451139	3.09409484294565	2.02117938280112	1.32272658847981	2.96677078280324	1.68457766806228	2.33741349775647	2.59259006913933	0.200216572301168	0.830313960524677	0.998431161219273
Merged-chr12-36208667-3	chr12	36208578	36208778	+	819.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027699, exon 5 of 5)	exon (NM_027699, exon 5 of 5)	9540.0	NM_027699	71156.0	Mm.250837	NM_027699	ENSMUSG00000020545	Lrrc72	1700108M19Rik|4933421E18Rik	leucine rich repeat containing 72	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-85596158-2	chr9	85596058	85596258	+	561.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	153176.0	NM_001081282	108837.0	Mm.22315	NM_175371	ENSMUSG00000035941	Ibtk	5430411K16Rik|AA409502|BTKI|mKIAA1417	inhibitor of Bruton agammaglobulinemia tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-127330344-3	chr8	127330223	127330423	+	964.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013580, intron 3 of 13)	intron (NM_001013580, intron 3 of 13)	30671.0	NM_001013580	93742.0	Mm.299254	NM_033620	ENSMUSG00000025812	Pard3	AA960621|AI256638|Asip|D8Ertd580e|Par-3|Par3|Pard-3|Pard3a|Phip	par-3 family cell polarity regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128179931-3	chr2	128179815	128180015	+	883.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	52340.0	NM_001284410	12125.0	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	2.42145739900606	3.11108660636782	2.36281587804848	2.65673697074799	2.44119430147541	3.1331731828144	2.38083420287614	2.67012893031503	0.0374378448644398	0.959348817599975	0.998431161219273
Merged-chr10-34267901-3	chr10	34267804	34268004	+	808.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14286.0	NM_009433	22110.0	Mm.20445	NM_009433	ENSMUSG00000047514	Tspyl1	Tspyl	testis-specific protein, Y-encoded-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128519043-4	chr10	128518940	128519140	+	860.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011843, intron 14 of 30)	intron (NM_011843, intron 14 of 30)	6819.0	NM_011843	23943.0	Mm.66056	NM_011843	ENSMUSG00000025366	Esyt1	Fam62a|Mbc2|vp115	extended synaptotagmin-like protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-9746769-4	chr1	9746719	9746919	+	591.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040462)	promoter-TSS (NR_040462)	-829.0	NR_040462	73331.0	Mm.460470	NR_040462		1700034P13Rik	-	RIKEN cDNA 1700034P13 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-93428539-5	chr13	93428449	93428649	+	969.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	71259.0	NM_021310	57748.0	Mm.100273	NM_021310	ENSMUSG00000021690	Jmy	-	junction-mediating and regulatory protein	protein-coding	0.1330077469089	-0.231002141536154	-0.235708122946483	-0.239339595608923	0.557222466598559	-0.0308582504696505	-0.234670108201211	-0.238705136395659	1.65084342425934	0.495520868741893	1
Merged-chr9-104629406-4	chr9	104629268	104629468	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028719, intron 1 of 15)	intron (NM_028719, intron 1 of 15)	59885.0	NM_028719	74020.0	Mm.326240	NM_028719	ENSMUSG00000032564	Cpne4	3632411M23Rik|4933406O10Rik	copine IV	protein-coding	5.90925941425927	5.86131827691035	5.30055061202446	5.32367832090146	6.12536185836392	5.6230850509176	5.36959186503565	5.34741585113675	0.035218977851481	0.903823956825047	0.998431161219273
Merged-chr16-81328011-2	chr16	81327911	81328111	+	859.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113208, intron 1 of 17)	Lx4B|LINE|L1	127314.0	NM_010954	17968.0	Mm.433941	NM_010954	ENSMUSG00000022762	Ncam2	Ncam-2|Ocam|RNCAM	neural cell adhesion molecule 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-54920190-4	chr15	54920077	54920277	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001136077)	promoter-TSS (NM_001136077)	-31.0	NM_001285994	18606.0	Mm.250256	NM_015744	ENSMUSG00000022425	Enpp2	ATX|E-NPP 2|Npps2|PD-Ialpha|Pdnp2|lysoPLD	ectonucleotide pyrophosphatase/phosphodiesterase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-111083518-4	chr10	111083434	111083634	+	954.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73468.0	NM_172554	320150.0	Mm.339281	NM_172554	ENSMUSG00000035798	Zdhhc17	A230053P19Rik|BB187739|D130071N24Rik|DHHC-17|Hip14	zinc finger, DHHC domain containing 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-120872590-1	chr10	120872490	120872690	+	761.333313	f0_balb.idr	intron (NM_177092, intron 1 of 6)	intron (NM_177092, intron 1 of 6)	14961.0	NR_038023	100504616.0	Mm.451174	NR_038023	ENSMUSG00000087480	Gm15910	-	predicted gene 15910	ncRNA	-0.953694475549414	-0.937219275643557	-0.94751876267853	-0.949840611213312	-0.953121251587628	-0.934513833296819	-0.759534286581578	-0.29533560752236	3.03422355279275	0.317960493918322	1
Merged-chr4-134102574-4	chr4	134102482	134102682	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045571)	promoter-TSS (NR_045571)	-1.0	NR_045571	67586.0	Mm.282029	NM_026257	ENSMUSG00000012126	Ubxn11	4930506L07Rik|D4Bwg1540e|Soc|Soci|Ubxd5	UBX domain protein 11	protein-coding	-0.838934633420242	-0.824100364676822	-0.828899055011733	-0.832611801182901	-0.837980973664903	-0.822862287162962	0.20526103796468	-0.831958143752468	4.03610236483351	0.130863340634291	1
Merged-chr17-36952777-2	chr17	36952677	36952877	+	703.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029632)	promoter-TSS (NM_029632)	-985.0	NM_029632	76497.0	Mm.46176	NM_029632	ENSMUSG00000036398	Ppp1r11	1500041B02Rik|AV117883|Hcgv|Tcte5|Tctex-5|Tctex5	protein phosphatase 1, regulatory (inhibitor) subunit 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-36663717-4	chr16	36663619	36663819	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019388, intron 1 of 7)	intron (NM_019388, intron 1 of 7)	2358.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91767334-2	chr16	91767234	91767434	+	859.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110276, intron 1 of 15)	RSINE1|SINE|B4	37963.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-48444238-4	chr6	48444150	48444350	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355746, intron 1 of 4)	intron (NM_001355746, intron 1 of 4)	840.0	NM_001085415	68910.0	Mm.2464	NM_020589	ENSMUSG00000068551	Zfp467	1190001I08Rik|AB041616|AI426952|AV017623|EZI|MNCb-3350|Znf467	zinc finger protein 467	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166483875-3	chr2	166483784	166483984	+	867.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	36433.0	NR_015558	319684.0	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-50244709-2	chr6	50244609	50244809	+	801.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_018769, intron 3 of 9)	intron (NM_018769, intron 3 of 9)	17060.0	NM_018769	54722.0	Mm.248361	NM_018769	ENSMUSG00000029821	Gsdme	2310037D07Rik|4932441K13Rik|Dfna5|Dfna5h|EG14210|Fin15	gasdermin E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-80006353-1	chr15	80006253	80006453	+	790.25	f0_balb.idr	intron (NM_011057, intron 1 of 6)	intron (NM_011057, intron 1 of 6)	-7327.0	NR_106072	102465699.0		NR_106072	ENSMUSG00000099222	Mir7213	Gm27377|mmu-mir-7213	microRNA 7213	ncRNA	0.651099416695627	0.649475489152336	0.616171669055684	0.707282856859649	0.292226963831443	0.792055567292933	0.304904935846247	0.2996791532573	-1.49348655965464	0.411724906978253	1
Merged-chr5-75043980-2	chr5	75043868	75044068	+	1000.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_028850, intron 1 of 5)	intron (NM_028850, intron 1 of 5)	673.0	NM_028850	74277.0	Mm.239814	NM_028850	ENSMUSG00000029229	Chic2	1700081B18Rik|4930502K01Rik|BTL	cysteine-rich hydrophobic domain 2	protein-coding	1.07736547720116	0.688493528777601	3.04060813137499	1.36076109258431	0.594678858465937	0.695211042161127	2.40366393191676	0.63695503674009	-1.21387413529357	0.637353450703602	0.982417279970648
Merged-chr4-20041804-1	chr4	20041704	20041904	+	1000.0	f1_balb.idr	promoter-TSS (NM_010281)	promoter-TSS (NM_010281)	-248.0	NM_010281	14590.0	Mm.20461	NM_010281	ENSMUSG00000073987	Ggh	gamma-GH	gamma-glutamyl hydrolase	protein-coding	4.19692821996478	4.52612143681616	4.59393804066317	2.41034878678881	2.974162054295	2.97032187305799	3.35740912069406	4.05101795225272	-1.03812477814683	0.08531166345885	0.44854046370696
Merged-chr10-100950007-3	chr10	100949909	100950109	+	647.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-208374.0	NR_152765	102639396.0	Mm.404529	NR_152765		Gm35722	-	predicted gene, 35722	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-117123300-3	chr5	117123202	117123402	+	824.861084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199685, intron 1 of 20)	intron (NM_001199685, intron 1 of 20)	3173.0	NM_001199685	330177.0	Mm.24343	NM_183306	ENSMUSG00000061288	Taok3	2900006A08Rik|A130052D22|A430105I05Rik	TAO kinase 3	protein-coding	0.91110666851165	1.38832986091422	0.753162571257771	0.739805303035162	1.45819309969448	1.89694695336752	0.756927234213307	1.91987008823907	2.35603908701561	0.0996746770310214	0.49093671225075
Merged-chr11-116445142-2	chr11	116445042	116445242	+	693.333374	f1_balb.idr|f1_c57bl6.idr	exon (NM_001033267, exon 10 of 14)	exon (NM_001033267, exon 10 of 14)	9205.0	NM_001033267	217341.0	Mm.387352	NM_001033267	ENSMUSG00000070331	Qrich2	Gm66	glutamine rich 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-81437665-4	chr16	81437529	81437729	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010954, exon 4 of 16)	exon (NM_010954, exon 4 of 16)	236932.0	NM_010954	17968.0	Mm.433941	NM_010954	ENSMUSG00000022762	Ncam2	Ncam-2|Ocam|RNCAM	neural cell adhesion molecule 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-66293749-3	chr5	66293645	66293845	+	886.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302833, intron 10 of 12)	intron (NM_001302833, intron 10 of 12)	32904.0	NM_027602	70918.0	Mm.23166	NM_027602	ENSMUSG00000029206	Nsun7	4921525L17Rik	NOL1/NOP2/Sun domain family, member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-75499890-2	chr10	75499790	75499990	+	571.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	17491.0	NM_175133	68778.0	Mm.29382	NM_175133	ENSMUSG00000033416	Gucd1	1110038D17Rik	guanylyl cyclase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-15076336-2	chr14	15076236	15076436	+	760.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	255521.0	NM_001195229	674895.0	Mm.317563	NM_001034865	ENSMUSG00000042567	Nek10	Gm282	NIMA (never in mitosis gene a)- related kinase 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-106456798-2	chr8	106456698	106456898	+	591.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41459.0	NM_011764	22751.0	Mm.295582	NM_011764	ENSMUSG00000031907	Zfp90	6430515L01Rik|KRAB17|NK10|Zfp64|Zfp83|mKIAA1954	zinc finger protein 90	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-65740747-2	chr11	65740607	65740807	+	628.0	f0_balb.idr|f1_balb.idr	intron (NM_001316367, intron 3 of 11)	URR1B|DNA|hAT-Charlie	-5875.0	NR_030417	791070.0		NR_030417	ENSMUSG00000076460	Mir744	Mirn744|mir-744|mmu-mir-744	microRNA 744	ncRNA	0.478862061024931	0.134138667223177	0.299004934753227	0.124443927918781	0.25907622313012	0.737525610034434	0.129869382091516	0.540344637608382	1.26922863000928	0.510933752857158	1
Merged-chr8-33653113-3	chr8	33653015	33653215	+	993.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010344)	promoter-TSS (NM_010344)	-123.0	NM_010344	14782.0	Mm.283573	NM_010344	ENSMUSG00000031584	Gsr	AI325518|D8Ertd238e|Gr-1|Gr1	glutathione reductase	protein-coding	5.20035589384649	5.56542938930341	4.73149715155787	4.77278504535247	4.28119260375462	5.62562323066767	3.84802198513116	2.59575973316279	-0.731188424647049	0.350403827378205	0.850926687535496
Merged-chr1-90960757-2	chr1	90960657	90960857	+	735.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159725, intron 3 of 5)	intron (NM_001159725, intron 3 of 5)	6910.0	NM_001159725	19329.0	Mm.279780	NM_008998	ENSMUSG00000026304	Rab17	AW413472	RAB17, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-56797137-2	chr10	56797037	56797237	+	578.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	365156.0	NR_152768	102640560.0	Mm.417249	NR_152768		Gm36595	-	predicted gene, 36595	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-67519391-2	chr8	67519291	67519491	+	769.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4463.0	NM_008674	17962.0	Mm.57193	NM_008674	ENSMUSG00000056426	Nat3	-	N-acetyltransferase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-93449081-2	chr2	93448982	93449182	+	668.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001136055, intron 1 of 9)	intron (NM_001136055, intron 1 of 9)	3590.0	NM_001271462	12521.0	Mm.4261	NM_007656	ENSMUSG00000027215	Cd82	AA682076|AL023070|C33|IA4|Kai1|Tspan27	CD82 antigen	protein-coding	0.871382267741318	0.465572898936026	0.4550905880878	1.05873760652696	0.435154342780748	1.03667647433383	1.5105421227905	0.44833622790386	0.956194900119862	0.583206424203039	0.966599221005409
Merged-chr19-47256111-4	chr19	47256018	47256218	+	988.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163480, intron 4 of 5)	intron (NM_001163480, intron 4 of 5)	17471.0	NR_105961	102466782.0		NR_105961	ENSMUSG00000098786	Mir6995	Gm27576|mmu-mir-6995	microRNA 6995	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-136187009-2	chr4	136186884	136187084	+	793.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001305399, exon 4 of 5)	exon (NM_001305399, exon 4 of 5)	6202.0	NM_001305399	242705.0	Mm.307932	NM_177733	ENSMUSG00000018983	E2f2	E2F-2	E2F transcription factor 2	protein-coding	0.0580032606613221	-0.491600351262905	-0.495485269758199	-0.498480274205665	-0.502709134740551	-0.490724170814196	0.0862228799359395	-0.497957200823286	0.0907745743873591	0.97400258325665	1
Merged-chr5-97345316-4	chr5	97345224	97345424	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	47006.0	NM_001033191	97243.0	Mm.11746	NM_001033191	ENSMUSG00000046000	Naa11	Ard1b|Ard2|C80008	N(alpha)-acetyltransferase 11, NatA catalytic subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55868130-4	chr19	55868036	55868236	+	827.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_138565, intron 4 of 15)	intron (NR_138565, intron 4 of 15)	-27185.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-181276217-4	chr2	181276123	181276323	+	966.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198169, intron 2 of 9)	intron (NM_198169, intron 2 of 9)	11743.0	NM_198169	229004.0	Mm.220423	NM_198169	ENSMUSG00000038705	Gmeb2	AI839884	glucocorticoid modulatory element binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-52960475-2	chr2	52960375	52960575	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	102607.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-98833312-2	chr13	98833212	98833412	+	735.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17863.0	NM_172591	218503.0	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44816855-3	chr7	44816765	44816965	+	913.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033136)	promoter-TSS (NR_033136)	-207.0	NR_033136	107503.0	Mm.389890	NM_030693	ENSMUSG00000038539	Atf5	AFTA|Atf7|Atfx|ODA-10	activating transcription factor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-93810126-4	chr16	93810048	93810248	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027293, exon 37 of 37)	exon (NM_027293, exon 37 of 37)	-15247.0	NR_151466	102633000.0	Mm.443436	NR_151466		2310043M15Rik	-	RIKEN cDNA 2310043M15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-103179418-2	chr15	103179318	103179518	+	833.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16134.0	NM_027885	71726.0	Mm.254820	NM_027885	ENSMUSG00000036061	Smug1	1200013B09Rik|A930006H09Rik|C85220	single-strand selective monofunctional uracil DNA glycosylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80101928-2	chr10	80101828	80102028	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359635)	promoter-TSS (NM_001359635)	-741.0	NM_001359635	216161.0	Mm.262102	NM_183426	ENSMUSG00000035673	Sbno2	BC019206|F730040C21|Sno|Stno	strawberry notch 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126804266-4	chr8	126804164	126804364	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44756.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-35939725-4	chr18	35939619	35939819	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-25111.0	NM_001289602	74002.0	Mm.196944	NM_028707	ENSMUSG00000024347	Psd2	6330404E20Rik|AW125584|EFA6C	pleckstrin and Sec7 domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-37613673-4	chr9	37613563	37613763	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001324545)	promoter-TSS (NM_001324545)	57.0	NM_011449	20686.0	Mm.8637	NM_011449	ENSMUSG00000001948	Spa17	Sp17	sperm autoantigenic protein 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-55324552-2	chr13	55324452	55324652	+	557.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_016662)	TTS (NM_016662)	2497.0	NM_025596	66494.0	Mm.439805	NM_025596	ENSMUSG00000021486	Prelid1	2610524G07Rik|Preli	PRELI domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-40958809-4	chr14	40958725	40958925	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145928, intron 1 of 8)	intron (NM_145928, intron 1 of 8)	8071.0	NM_145928	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-104494597-4	chr2	104494496	104494696	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145824)	promoter-TSS (NM_001145824)	-107.0	NM_001145824	15259.0	Mm.257925	NM_010434	ENSMUSG00000027177	Hipk3	DYRK6|FIST3|PKY|mir-1902	homeodomain interacting protein kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-17589132-4	chr17	17589024	17589224	+	759.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172827, intron 1 of 17)	L1MEf|LINE|L1	35365.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-135597156-4	chr3	135597064	135597264	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008689, intron 17 of 24)	intron (NM_008689, intron 17 of 24)	94383.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	-0.181873012932416	-0.162074205452383	-0.168497101065846	-0.17349406859304	-0.180619798545452	-0.160634544784557	0.784157339725027	0.539487732946317	4.09837051583391	0.0831125823778451	1
Merged-chr1-176068127-4	chr1	176068046	176068246	+	998.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357846, intron 3 of 8)	ORR1F|LTR|ERVL-MaLR	145796.0	NM_001357845	319455.0	Mm.338001	NM_176916	ENSMUSG00000055214	Pld5	B230365F16Rik	phospholipase D family, member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28407659-4	chr17	28407569	28407769	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010220, intron 8 of 10)	intron (NM_010220, intron 8 of 10)	-42453.0	NM_021478	22157.0	Mm.42102	NM_021478	ENSMUSG00000037446	Tulp1	Tulp1l	tubby like protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-83713918-4	chr18	83713763	83713963	+	902.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	372699.0	NM_001081300	110796.0	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-85652069-1	chr1	85651969	85652169	+	635.0	f0_balb.idr	intron (NM_013673, intron 1 of 19)	RSINE1|SINE|B4	2081.0	NM_001313714	20684.0	Mm.290906	NM_013673	ENSMUSG00000026222	Sp100	A430075G10Rik	nuclear antigen Sp100	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-102675466-2	chr2	102675362	102675562	+	783.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077514, intron 1 of 10)	intron (NM_001077514, intron 1 of 10)	16773.0	NM_001361018	20511.0	Mm.267547	NM_011393	ENSMUSG00000005089	Slc1a2	1700091C19Rik|2900019G14Rik|AI159670|Eaat2|GLT-1|GLT1|MGLT1	solute carrier family 1 (glial high affinity glutamate transporter), member 2	protein-coding	1.58643388110749	1.28601042387505	1.24271123042799	1.58463887919003	0.829982376499512	1.92201278683689	0.861232766086851	1.21451104954398	-0.467940009962649	0.723911920220192	0.998431161219273
Merged-chr10-26695606-3	chr10	26695471	26695671	+	877.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20920.0	NR_033633	667572.0	Mm.482728	NR_033633	ENSMUSG00000098179	Gm8709	EG667572	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	-0.147051797211897	0.0481223661373305	-0.138265707150805	0.0126181090489963	-0.00939280344736541	0.20763934168775	0.40967635424645	-0.140999816406164	1.88953897754727	0.378011365300772	1
Merged-chr5-75044629-4	chr5	75044524	75044724	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028850)	promoter-TSS (NM_028850)	17.0	NM_028850	74277.0	Mm.239814	NM_028850	ENSMUSG00000029229	Chic2	1700081B18Rik|4930502K01Rik|BTL	cysteine-rich hydrophobic domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-5485989-4	chr11	5485958	5486158	+	842.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34583.0	NM_013842	22433.0	Mm.469937	NM_013842	ENSMUSG00000020484	Xbp1	D11Ertd39e|TREB-5|TREB5|XBP-1	X-box binding protein 1	protein-coding	1.41532102723528	0.972081129418506	1.91832930634618	1.49558086318423	1.42757233544738	0.976606376809498	2.43598771333854	1.50376134985794	0.661170429596575	0.587764882372984	0.968220700072259
Merged-chr13-76099143-3	chr13	76099036	76099236	+	821.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029847)	promoter-TSS (NM_029847)	402.0	NM_001081352	218343.0	Mm.277964	NM_001081352	ENSMUSG00000033991	Ttc37	-	tetratricopeptide repeat domain 37	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-18899273-4	chr8	18899151	18899351	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51620.0	NM_001286469	319581.0	Mm.111354	NM_176951	ENSMUSG00000039814	Xkr5	5430438H03Rik|XRG5	X-linked Kx blood group related 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-90293707-4	chr3	90293640	90293840	+	930.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	23591.0	NR_105979	102465612.0		NR_105979	ENSMUSG00000099199	Mir7012	Gm27370|mmu-mir-7012	microRNA 7012	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117832424-4	chr11	117832330	117832530	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027827, exon 3 of 11)	exon (NM_027827, exon 3 of 11)	-6416.0	NM_009387	21877.0	Mm.2661	NM_009387	ENSMUSG00000025574	Tk1	D530002A18Rik|Tk-1|Tk1a|Tk1b	thymidine kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-73720566-2	chr12	73720466	73720666	+	650.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008856, intron 9 of 13)	intron (NM_008856, intron 9 of 13)	135770.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-97700509-2	chr15	97700409	97700609	+	595.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028003, intron 3 of 16)	intron (NM_028003, intron 3 of 16)	5313.0	NM_028003	71919.0	Mm.12255	NM_028003	ENSMUSG00000022466	Rpap3	2310042P20Rik|D15Ertd682e	RNA polymerase II associated protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-9111937-4	chr5	9111805	9112005	+	999.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081029, intron 2 of 4)	intron (NM_001081029, intron 2 of 4)	11168.0	NM_001081029	652925.0	Mm.439954	NM_001081029	ENSMUSG00000079659	Tmem243	4930420K17Rik|E030031F02Rik	transmembrane protein 243, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124552242-2	chr5	124552142	124552342	+	783.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026409)	promoter-TSS (NM_026409)	-622.0	NM_001190795	67848.0	Mm.281601	NM_026409	ENSMUSG00000029389	Ddx55	2810021H22Rik|mKIAA1595	DEAD (Asp-Glu-Ala-Asp) box polypeptide 55	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-125189754-5	chr5	125189612	125189812	+	977.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-10498.0	NM_001253904	20602.0	Mm.278646	NM_011424	ENSMUSG00000029478	Ncor2	N-CoR|SMRT|SMRTe	nuclear receptor co-repressor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-91515126-3	chr13	91515017	91515217	+	935.0277710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360776, intron 1 of 15)	intron (NM_001360776, intron 1 of 15)	54020.0	NM_024186	66970.0	Mm.343095	NM_024186	ENSMUSG00000003992	Ssbp2	1500004K09Rik|2310079I02Rik|9330163K02Rik|A830008M03Rik|AU067692|AW558684|Hspc116|SSDP2	single-stranded DNA binding protein 2	protein-coding	1.74940702222429	1.70131758836559	1.06555912115787	1.84808771707904	1.5292617684278	2.21087856745759	1.07026514066644	2.14962120888115	0.59363234263549	0.610003194072755	0.974992433107985
Merged-chr13-46979715-2	chr13	46979615	46979815	+	675.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	35135.0	NM_175340	105193.0	Mm.25593	NM_175340	ENSMUSG00000044231	Nhlrc1	AI505271|B230309E09Rik|EPM2B	NHL repeat containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-53650928-3	chr9	53650802	53651002	+	664.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161618, intron 3 of 17)	intron (NM_001161618, intron 3 of 17)	16605.0	NM_001161618	75717.0	Mm.218910	NM_027807	ENSMUSG00000032030	Cul5	4921514I20Rik|8430423K24Rik|AI852817|C030032G03Rik|C330021I08Rik|VACM-1|VACM1	cullin 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-4942701-1	chr13	4942601	4942801	+	1000.0	f0_c57.idr	Intergenic	IAPLTR2_Mm|LTR|ERVK	-333537.0	NM_018859	56043.0	Mm.251908	NM_018859	ENSMUSG00000045410	Akr1e1	1810061I10Rik|Akr1e2	aldo-keto reductase family 1, member E1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-29574472-4	chr5	29574375	29574575	+	926.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133907, intron 1 of 22)	RLTR45|LTR|ERVK	5233.0	NM_133907	100763.0	Mm.137746	NM_133907	ENSMUSG00000039000	Ube3c	AI853514|mKIAA0010	ubiquitin protein ligase E3C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-51553974-4	chr10	51553876	51554076	+	854.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36484.0	NM_029894	77296.0	Mm.30588	NM_029894	ENSMUSG00000019909	Fam162b	9430073N08Rik	family with sequence similarity 162, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-91395874-2	chr8	91395774	91395974	+	569.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_011936, intron 1 of 8)	intron (NM_011936, intron 1 of 8)	82349.0	NM_011936	26383.0	Mm.4375	NM_011936	ENSMUSG00000055932	Fto	AW743446|mKIAA1752	fat mass and obesity associated	protein-coding	-1.26297147305202	-1.51336964835199	-1.52290115558626	-1.53073061942109	-1.54267576991114	-1.36133000838898	-1.52074343127311	-1.52932914913802	-0.563746499231123	0.872676935132172	1
Merged-chr15-61982354-2	chr15	61982254	61982454	+	843.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	-2987.0	NM_001177354	17869.0	Mm.2444	NM_010849	ENSMUSG00000022346	Myc	AU016757|Myc2|Niard|Nird|bHLHe39	myelocytomatosis oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-28959255-2	chr13	28959155	28959355	+	619.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5556.0	NM_009238	20677.0	Mm.240627	NM_009238	ENSMUSG00000076431	Sox4	AA682046|Sox-4	SRY (sex determining region Y)-box 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-66940535-4	chr10	66940412	66940612	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20128.0	NR_138561	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-119498893-5	chr1	119498802	119499002	+	916.6333619999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022327, intron 1 of 4)	ID_B1|SINE|B4	5880.0	NM_022327	64143.0	Mm.27832	NM_022327	ENSMUSG00000004451	Ralb	5730472O18Rik	v-ral simian leukemia viral oncogene B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-167336602-4	chr1	167336493	167336693	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-13398.0	NM_019993	56752.0	Mm.292539	NM_019993	ENSMUSG00000026687	Aldh9a1	AA139417|Abaldh|ESTM40|TMABA-DH|Tmabadh	aldehyde dehydrogenase 9, subfamily A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-13146463-3	chr17	13146370	13146570	+	886.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER12B|LTR|ERVK	-14679.0	NM_199252	381058.0	Mm.390935	NM_199252	ENSMUSG00000067049	Unc93a	Unc93l|unc-93A	unc-93 homolog A (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-115863035-3	chr9	115862948	115863148	+	776.922241	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	C-rich|Low_complexity|Low_complexity	-46407.0	NM_028638	73748.0	Mm.485018	NM_028638	ENSMUSG00000056880	Gadl1	1110027M19Rik|ADC|CSADC	glutamate decarboxylase-like 1	protein-coding	1.5408707903507	2.21692848644348	0.604851620069617	1.31918271801609	0.56986757199015	1.11359429083342	0.608843640385651	0.593153302994014	-3.48733484036593	0.0312984648322486	0.243829166751859
Merged-chr9-21304343-2	chr9	21304243	21304443	+	638.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110300, intron 5 of 10)	B1_Mur2|SINE|Alu	7990.0	NM_001110300	11768.0	Mm.22239	NM_009678	ENSMUSG00000003309	Ap1m2	D9Ertd818e|[m]1B|mu1B	adaptor protein complex AP-1, mu 2 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-10596463-4	chr8	10596330	10596530	+	954.56665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001319151, intron 33 of 34)	intron (NM_001319151, intron 33 of 34)	286024.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-99517653-4	chr9	99517524	99517724	+	852.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001166138)	TTS (NM_001166138)	47203.0	NR_028123	69797.0	Mm.307159	NR_028123	ENSMUSG00000046242	1600029I14Rik	-	RIKEN cDNA 1600029I14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-25363935-1	chr17	25363835	25364035	+	598.0	f1_c57bl6.idr	Intergenic	Intergenic	-2398.0	NM_010781	17229.0	Mm.7409	NM_010781	ENSMUSG00000033825	Tpsb2	AV011504|MMCP-6|Mcp-6|Mcp6|Mcpt6	tryptase beta 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-76676541-3	chr12	76676454	76676654	+	956.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013675, intron 1 of 35)	intron (NM_013675, intron 1 of 35)	33993.0	NM_013675	20741.0	Mm.32881	NM_013675	ENSMUSG00000021061	Sptb	AI842465|D330027P03Rik|Gm1301|Spnb-1|Spnb1|ja|jaundiced|mKIAA4219	spectrin beta, erythrocytic	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-119157249-4	chr12	119157151	119157351	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	81025.0	NM_177290	320910.0	Mm.217000	NM_177290	ENSMUSG00000025321	Itgb8	4832412O06Rik	integrin beta 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-130718589-3	chr5	130718496	130718696	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021371, intron 4 of 5)	ORR1E|LTR|ERVL-MaLR	269804.0	NM_021371	140904.0	Mm.40875	NM_021371	ENSMUSG00000060371	Caln1	9630012C17Rik|Cabp8|MNCb-0849	calneuron 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-108655867-2	chr6	108655767	108655967	+	661.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_104577, intron 1 of 6)	intron (NR_104577, intron 1 of 6)	-4762.0	NM_011498	20893.0	Mm.2436	NM_011498	ENSMUSG00000030103	Bhlhe40	Bhlhb2|C130042M06Rik|CR8|Clast5|Dec1|Sharp2|Stra13|Stra14	basic helix-loop-helix family, member e40	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-77174912-4	chr16	77174821	77175021	+	942.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-154407.0	NR_015543	77994.0	Mm.394688	NR_015543	ENSMUSG00000090386	Mir99ahg	2810055G20Rik|D730043B02Rik	Mir99a and Mirlet7c-1 host gene (non-protein coding)	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-59248136-4	chr3	59248055	59248255	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177855, intron 24 of 43)	intron (NM_177855, intron 24 of 43)	14830.0	NM_027571	70839.0	Mm.422675	NM_027571	ENSMUSG00000036353	P2ry12	2900079B22Rik|4921504D23Rik|P2Y12	purinergic receptor P2Y, G-protein coupled 12	protein-coding	4.33781326840057	4.6813359440866	3.98511089282496	5.40783190047924	4.23243954374026	4.71310441794521	3.85602014510911	5.11772178230672	-0.184871348528858	0.676274922360907	0.99440487726309
Merged-chr3-79179751-3	chr3	79179689	79179889	+	940.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CACAA)n|Simple_repeat|Simple_repeat	-33130.0	NR_045502	70924.0	Mm.444622	NR_045502	ENSMUSG00000104585	4921511C10Rik	-	RIKEN cDNA 4921511C10 gene	ncRNA	1.1800687817234	1.93277778258976	0.201119512227095	0.436018326525081	0.172026344902987	0.219217818681687	0.204434572375585	0.191398842035217	-4.87686048122185	0.00727168722907288	0.0868967414443667
Merged-chr14-25459635-3	chr14	25459551	25459751	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	CpG	466.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-100594290-3	chr13	100594218	100594418	+	918.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22626.0	NM_178410	218518.0	Mm.25300	NM_178410	ENSMUSG00000021636	Marveld2	BC003296|MARVD2|Mrvldc2|Tric|Trica|Tricb|Tricc	MARVEL (membrane-associating) domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-122158270-1	chr2	122158170	122158370	+	698.0	f1_balb.idr	intron (NM_026251, intron 2 of 17)	RSINE1|SINE|B4	-2430.0	NM_080510	70928.0	Mm.379188	NM_080510	ENSMUSG00000033368	Trim69	4921519C19Rik|Rnf36|Trif|Trimless	tripartite motif-containing 69	protein-coding	1.39241644578259	1.18434375237502	0.84717382433681	0.653648446416546	1.2446426625749	1.04925130689466	0.663305417862333	0.97904947021574	-0.258371316085543	0.861390269478222	0.998431161219273
Merged-chr14-103962516-1	chr14	103962416	103962616	+	583.0	f0_balb.idr	Intergenic	Intergenic	64626.0	NR_045953	73877.0	Mm.399172	NR_045953	ENSMUSG00000115727	4930432J09Rik	-	RIKEN cDNA 4930432J09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34879686-4	chr17	34879591	34879791	+	926.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013484, intron 3 of 17)	intron (NM_013484, intron 3 of 17)	2409.0	NM_013484	12263.0	Mm.283217	NM_013484	ENSMUSG00000024371	C2	-	complement component 2 (within H-2S)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-31344403-3	chr17	31344275	31344475	+	717.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001242427, intron 17 of 19)	intron (NM_001242427, intron 17 of 19)	-41859.0	NM_008804	18585.0	Mm.10812	NM_008804	ENSMUSG00000041119	Pde9a	PDE9A1	phosphodiesterase 9A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-63755054-1	chr11	63754954	63755154	+	581.0	f1_c57bl6.idr	Intergenic	Intergenic	167230.0	NM_018805	54710.0	Mm.274426	NM_018805	ENSMUSG00000070407	Hs3st3b1	3-OST-3B|3OST3B1|3Ost3b|AU041882|AW536289|Hs3st3b|m3-OST-3B	heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	protein-coding	1.49492432150255	0.917294776933496	1.11512112929926	0.311953679605364	0.299920395048191	0.333365332854539	0.322687789648145	0.313423713536812	-4.62683841659562	0.0130867567811135	0.131723915989765
Merged-chr2-22749995-4	chr2	22749912	22750112	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24315.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124050240-4	chr5	124050138	124050338	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17978.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-153803711-4	chr1	153803600	153803800	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001243223, intron 13 of 20)	intron (NM_001243223, intron 13 of 20)	40441.0	NM_001243223	240816.0	Mm.329340	NM_001243223	ENSMUSG00000042641	Rgsl1	4930415K13Rik|Gm202|Rgsl2	regulator of G-protein signaling like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-27732945-2	chr10	27732845	27733045	+	890.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR26|LTR|ERVK	-116003.0	NM_008481	16773.0	Mm.256087	NM_008481	ENSMUSG00000019899	Lama2	5830440B04|dy|mKIAA4087|mer|merosin	laminin, alpha 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91959054-3	chr2	91958910	91959110	+	836.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138306, intron 1 of 30)	intron (NM_138306, intron 1 of 30)	4553.0	NM_138306	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180323522-2	chr1	180323422	180323622	+	590.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-6954.0	NM_001081175	320404.0	Mm.132535	NM_001081175	ENSMUSG00000038855	Itpkb	1110033J02Rik|E130307H12Rik	inositol 1,4,5-trisphosphate 3-kinase B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-73647581-4	chr5	73647507	73647707	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011890, intron 1 of 5)	CpG	124.0	NM_011890	24051.0	Mm.89310	NM_011890	ENSMUSG00000029156	Sgcb	43kDa|AI747103|AI844814|beta-SG	sarcoglycan, beta (dystrophin-associated glycoprotein)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-32361455-3	chr19	32361360	32361560	+	849.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 1 of 9)	ORR1E-int|LTR|ERVL-MaLR	-12144.0	NM_001168525	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	2.0584990163901	2.06300389938197	2.59418828917766	1.64171924274383	1.40723372641592	2.43775515244253	1.8640801944499	1.80913516670783	-0.530437430908857	0.583477555527132	0.966599221005409
Merged-chr10-4383032-2	chr10	4382932	4383132	+	712.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033466, intron 1 of 2)	intron (NM_001033466, intron 1 of 2)	4443.0	NM_001359811	381990.0	Mm.262466	NM_001033466	ENSMUSG00000075327	Zbtb2	Gm1103	zinc finger and BTB domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-17982124-2	chr14	17981957	17982157	+	798.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_009380, exon 1 of 7)	exon (NM_009380, exon 1 of 7)	413.0	NM_009380	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-21941082-4	chr13	21940982	21941182	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4012.0	NM_183014	193452.0	Mm.187446	NM_183014	ENSMUSG00000006720	Zfp184	4930500C15Rik	zinc finger protein 184 (Kruppel-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-105911100-3	chr1	105911008	105911208	+	592.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	79174.0	NR_151625	635504.0	Mm.359717	NR_151625		Gm7160	EG635504	predicted gene 7160	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-102442717-2	chr15	102442617	102442817	+	830.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2285.0	NM_001356575	110542.0	Mm.60331	NM_144547	ENSMUSG00000023047	Amhr2	Misiir|Misrii|Mrii	anti-Mullerian hormone type 2 receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-64960452-2	chr9	64960352	64960552	+	629.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175153)	promoter-TSS (NM_175153)	-380.0	NM_001077631	69882.0	Mm.272616	NM_175153	ENSMUSG00000034263	Ints14	2010321M09Rik|Vwa9	integrator complex subunit 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-137685515-3	chr6	137685419	137685619	+	739.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36234.0	NM_007945	13860.0	Mm.235346	NM_007945	ENSMUSG00000015766	Eps8	AW261790	epidermal growth factor receptor pathway substrate 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-45235583-2	chr9	45235483	45235683	+	574.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001198971, intron 1 of 4)	intron (NM_001198971, intron 1 of 4)	31124.0	NR_106054	102466803.0		NR_106054	ENSMUSG00000098361	Mir7086	Gm27643|mmu-mir-7086	microRNA 7086	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-41017951-2	chr13	41017851	41018051	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360770, intron 2 of 4)	intron (NM_001360770, intron 2 of 4)	1701.0	NM_001360770	66154.0	Mm.30005	NM_025387	ENSMUSG00000021361	Tmem14c	1110021D01Rik|AU020193|HSPC194	transmembrane protein 14C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-81211910-1	chr7	81211810	81212010	+	543.0	f0_balb.idr	Intergenic	Intergenic	-1894.0	NM_008803	18584.0	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27977395-3	chr17	27977353	27977553	+	969.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286041, intron 3 of 23)	intron (NM_001286041, intron 3 of 23)	68147.0	NM_181413	224650.0	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-45893928-4	chr9	45893825	45894025	+	996.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178709, intron 5 of 13)	MTC|LTR|ERVL-MaLR	12257.0	NM_001361114	235315.0	Mm.220945	NM_178709	ENSMUSG00000042790	Rnf214	D130054N24Rik	ring finger protein 214	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-53951141-3	chr6	53951029	53951229	+	851.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027749, intron 6 of 12)	intron (NM_027749, intron 6 of 12)	27544.0	NM_027749	71287.0	Mm.158654	NM_027749	ENSMUSG00000052955	Cpvl	4933436L16Rik|HVLP	carboxypeptidase, vitellogenic-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-53303562-4	chr19	53303470	53303670	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4|SINE|ID	-6936.0	NM_001008542	17859.0	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-127092151-1	chr1	127092051	127092251	+	544.0	f1_balb.idr	Intergenic	MTD|LTR|ERVL-MaLR	-112835.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-103418248-3	chr11	103418155	103418355	+	744.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-5591.0	NM_183034	353047.0	Mm.18556	NM_183034	ENSMUSG00000034247	Plekhm1	AP162|B2|BC038943|D330036J23Rik	pleckstrin homology domain containing, family M (with RUN domain) member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-89569224-4	chr1	89569126	89569326	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037136, intron 1 of 16)	intron (NM_001037136, intron 1 of 16)	114415.0	NM_001037136	347722.0	Mm.291135	NM_178119	ENSMUSG00000055013	Agap1	Centg2|Ggap1|R75364|mKIAA1099	ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165948992-2	chr2	165948912	165949112	+	765.875	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43625.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-55959327-7	chr17	55959293	55959493	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_108021)	promoter-TSS (NR_108021)	8.0	NR_108021	100504333.0	Mm.391908	NR_108021	ENSMUSG00000097077	Gm16712	-	predicted gene, 16712	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119394523-4	chr11	119394475	119394675	+	887.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4103.0	NR_035453	100316690.0		NR_035453	ENSMUSG00000088015	Mir1932	mir-1932|mmu-mir-1932	microRNA 1932	ncRNA	2.14496600476128	2.05135933889467	3.08915590455135	3.07795096513819	2.29635171073863	1.83116296665947	3.1131272592258	3.29387515952531	0.158848209207764	0.844611671242938	0.998431161219273
Merged-chr17-26439017-3	chr17	26438941	26439141	+	854.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081656, exon 3 of 5)	exon (NM_001081656, exon 3 of 5)	24076.0	NM_001081656	240055.0	Mm.133211	NM_001081656	ENSMUSG00000034413	Neurl1b	C230078M08Rik|EG240055	neuralized E3 ubiquitin protein ligase 1B	protein-coding	0.358223284014302	0.0125137412922032	0.654159670730958	0.0036168250388027	0.366545731989496	0.0136483550014455	0.18244224426178	0.00429251434772071	-1.07875240462253	0.611411351250037	1
Merged-chr12-84031080-4	chr12	84030985	84031185	+	995.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7294.0	NM_134247	171282.0	Mm.482217	NM_134247	ENSMUSG00000052392	Acot4	B430212I04Rik|PTE-Ib|Pte1b|Pte2b	acyl-CoA thioesterase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-72235181-3	chr5	72235069	72235269	+	924.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_003966, intron 3 of 22)	intron (NR_003966, intron 3 of 22)	31826.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-60454656-4	chr11	60454579	60454779	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021354)	promoter-TSS (NM_021354)	88.0	NM_021354	13495.0	Mm.41803	NM_021354	ENSMUSG00000020537	Drg2	AI255295|AI461605|DRG-2	developmentally regulated GTP binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-88102738-4	chr17	88102606	88102806	+	839.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22806.0	NM_001190356	225058.0	Mm.312053	NM_001190356		Gm4832	EG225058	predicted gene 4832	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-30545762-1	chr14	30545662	30545862	+	578.0	f1_balb.idr	Intergenic	Intergenic	-3369.0	NM_009388	21881.0	Mm.290692	NM_009388	ENSMUSG00000021957	Tkt	p68	transketolase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-35061779-2	chr9	35061699	35061899	+	733.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009178, intron 1 of 10)	MLT1A0-int|LTR|ERVL-MaLR	-54929.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	1.4293940379099	1.97321881299534	1.00202785675569	1.50392465916624	1.84523966092396	1.02327295484122	1.69286064981486	1.75189891287797	0.303737034480774	0.802495400292704	0.998431161219273
Merged-chr11-44415017-5	chr11	44414870	44415070	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001303244)	TTS (NM_001303244)	14907.0	NM_001303244	16160.0	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-24794000-2	chr13	24793900	24794100	+	570.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-7657.0	NM_024473	79555.0	Mm.266668	NM_024473	ENSMUSG00000019132	BC005537	8030460C05Rik|C78201	cDNA sequence BC005537	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-84365518-4	chr17	84365432	84365632	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183021, intron 26 of 37)	intron (NM_183021, intron 26 of 37)	100676.0	NM_183021	240174.0	Mm.246767	NM_177826	ENSMUSG00000024251	Thada	6530405K19|A930021O22|AU019899|BC052885|GITA	thyroid adenoma associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-53401261-4	chr5	53401148	53401348	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	134142.0	NM_001145433	66278.0	Mm.27900	NM_001145433	ENSMUSG00000061461	Smim20	1110067B18Rik|1810013D10Rik|N28078	small integral membrane protein 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-41043737-4	chr8	41043619	41043819	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005863, intron 5 of 13)	intron (NM_001005863, intron 5 of 13)	-1788.0	NM_001005865	102103.0	Mm.149438	NM_001005863	ENSMUSG00000045636	Mtus1	AI481402|ATBP135|Atip1|B430010I23Rik|B430305I03Rik|C85752|Cctsg1-440|MD44|MTSG1|mKIAA1288	mitochondrial tumor suppressor 1	protein-coding	0.637011524681817	1.36508259246578	0.866892192435629	1.36986146399658	1.2962817075108	1.49725011228921	0.664942511930159	0.65452781799788	-0.0447144557879363	0.976886244916353	0.998431161219273
Merged-chr5-102061392-4	chr5	102061285	102061485	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 1 of 66)	intron (NM_172882, intron 1 of 66)	8536.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	3.91725683621834	4.42785680995229	4.78257886838076	4.22899106141897	4.00355970816526	4.40117708183441	3.93972707062893	3.5799741227814	-0.485361950521714	0.267073967882047	0.769922980421045
Merged-chr11-70846629-1	chr11	70846529	70846729	+	689.0	f1_c57bl6.idr	intron (NM_001291143, intron 2 of 18)	intron (NM_001291143, intron 2 of 18)	1868.0	NM_001291142	54189.0	Mm.7087	NM_019400	ENSMUSG00000020817	Rabep1	Rab5ep|rabaptin-5|rabaptin-5alpha	rabaptin, RAB GTPase binding effector protein 1	protein-coding	-0.571813588433788	-0.33086381260403	-0.561127608102567	-0.565118964777351	-0.570812184487241	-0.554849889429622	-0.559992173050932	0.503502248982652	2.87106089062472	0.279777874415669	1
Merged-chr1-135734325-4	chr1	135734225	135734425	+	988.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007791, intron 1 of 5)	intron (NM_007791, intron 1 of 5)	5158.0	NM_007791	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-157108414-4	chr2	157108321	157108521	+	892.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001139520, intron 11 of 16)	BGLII_A|LTR|ERVK	21366.0	NM_001177439	383766.0	Mm.480305	NM_001177439	ENSMUSG00000074628	Tldc2	Gm1332	TBC/LysM associated domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-32770659-3	chr14	32770563	32770763	+	756.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15300.0	NM_001163616	69069.0	Mm.261609	NM_001163616	ENSMUSG00000041707	1810011H11Rik	4733401I05Rik	RIKEN cDNA 1810011H11 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-74350740-2	chr1	74350640	74350840	+	651.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039509, intron 8 of 9)	intron (NM_001039509, intron 8 of 9)	-11368.0	NM_001033345	241112.0	Mm.310460	NM_001033345	ENSMUSG00000073650	Catip	Gm216	ciliogenesis associated TTC17 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-122486323-2	chr6	122486223	122486423	+	622.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027664)	promoter-TSS (NM_027664)	-18.0	NM_027664	108653.0	Mm.277939	NM_027664	ENSMUSG00000040649	Rimklb	4931417E21Rik|4933426K21Rik|AA097693|AI325948|AU015629|Naags	ribosomal modification protein rimK-like family member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-28841857-3	chr2	28841763	28841963	+	895.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033294, intron 1 of 19)	intron (NM_001033294, intron 1 of 19)	1457.0	NM_001033294	227674.0	Mm.44179	NM_001033294	ENSMUSG00000026806	Ddx31	5830444G11Rik|Gm997	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 31	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-53900174-4	chr19	53900103	53900303	+	873.6083369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011050, intron 1 of 11)	intron (NM_011050, intron 1 of 11)	-3148.0	NM_001168492	18569.0	Mm.1605	NM_011050	ENSMUSG00000024975	Pdcd4	D19Ucla1|Ma3|Tis	programmed cell death 4	protein-coding	-0.294083384950798	-0.277963382818132	0.430175288204581	-0.287290034214969	-0.293070061983337	-0.276782190008417	0.44311158986884	-0.286577643912737	0.0410571026119648	0.987250810110592	1
Merged-chr1-189707284-4	chr1	189707186	189707386	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19200.0	NM_001081363	108000.0	Mm.129746	NM_001081363	ENSMUSG00000026605	Cenpf	6530404A22Rik|AI325968|CENF|Lek1|PRO1779|mitosin	centromere protein F	protein-coding	3.91781334721442	4.12876449045311	3.93689315026166	3.69895413148157	3.79035645748174	3.52916710442485	3.7574358735629	3.39883532459663	-0.428359555860494	0.365591566062938	0.861036332257394
Merged-chr11-117308094-4	chr11	117307999	117308199	+	920.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113486, intron 3 of 11)	intron (NM_001113486, intron 3 of 11)	-23616.0	NM_017380	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-95671303-3	chr10	95671205	95671405	+	931.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-107159.0	NM_001358996	71207.0	Mm.24397	NM_027722	ENSMUSG00000020029	Nudt4	4933436C10Rik|DIPP-2|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P	nudix (nucleoside diphosphate linked moiety X)-type motif 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-13052314-3	chr17	13052197	13052397	+	801.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001013832)	promoter-TSS (NM_001013832)	-17.0	NM_001013832	436440.0	Mm.335670	NM_001013832	ENSMUSG00000071311	Gpr31b	12-HETER|GPR31c(t)|Gpr31|Gpr31c	G protein-coupled receptor 31, D17Leh66b region	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-3725970-4	chr13	3725968	3726168	+	950.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	78250.0	NM_027416	70405.0	Mm.20079	NM_027416	ENSMUSG00000063130	Calml3	2310068O22Rik|AI326174	calmodulin-like 3	protein-coding	0.136856207397327	0.290036197656565	-0.318891909987403	-0.322129955775212	-0.326698472743716	-0.119359919883562	-0.317965457418216	-0.321564586025638	-2.68792502353375	0.276132459661605	1
Merged-chr11-120361995-2	chr11	120361895	120362095	+	603.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_172802, exon 1 of 5)	exon (NM_172802, exon 1 of 5)	461.0	NM_172802	238021.0	Mm.481403	NM_172802	ENSMUSG00000025380	Fscn2	A930022G03|Ahl8|C630046B20Rik	fascin actin-bundling protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-111028876-4	chr7	111028808	111029008	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009431)	promoter-TSS (NM_009431)	-43.0	NM_009431	22083.0	Mm.255858	NM_009431	ENSMUSG00000005609	Ctr9	AA409336|Sh2bp1|Tsbp|Tsp|mKIAA0155	CTR9 homolog, Paf1/RNA polymerase II complex component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-20149791-4	chr11	20149695	20149895	+	732.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16_Mm|LTR|ERVK	-36844.0	NM_146243	66713.0	Mm.259045	NM_146243	ENSMUSG00000020152	Actr2	4921510D23Rik|AA409782|Arp2|D6Ertd746e	ARP2 actin-related protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-128648751-4	chr6	128648702	128648902	+	966.662476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13583.0	NM_053165	94071.0	Mm.197689	NM_053165	ENSMUSG00000030364	Clec2h	Clrf|clr-f	C-type lectin domain family 2, member h	protein-coding	3.53631295681428	5.06784256681396	4.31073891039334	3.81248240073345	4.17283212847659	3.64274802452626	4.28560651630872	5.10001464077116	0.137764515484386	0.780559209566725	0.998431161219273
Merged-chr2-79372689-4	chr2	79372630	79372830	+	863.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001048176, intron 2 of 12)	(TG)n|Simple_repeat|Simple_repeat	56258.0	NM_001048176	228094.0	Mm.440704	NM_001033295	ENSMUSG00000075256	Cerkl	Gm1958|Rp26	ceramide kinase-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-94774131-3	chr16	94774039	94774239	+	806.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025584, intron 3 of 4)	intron (NM_001025584, intron 3 of 4)	82551.0	NM_001025590	16522.0	Mm.328720	NM_010606	ENSMUSG00000043301	Kcnj6	BIR1|GIRK2|KATP2|KCNJ7|Kir3.2|weaver|wv	potassium inwardly-rectifying channel, subfamily J, member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-51147948-6	chr2	51147849	51148049	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028810, intron 2 of 4)	CpG	1162.0	NM_028810	74194.0	Mm.46497	NM_028810	ENSMUSG00000017144	Rnd3	2610017M01Rik|AI661404|Arhe|Rhoe	Rho family GTPase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28866055-4	chr7	28865910	28866110	+	928.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008496, intron 3 of 3)	intron (NM_008496, intron 3 of 3)	1624.0	NM_008496	16858.0	Mm.20973	NM_008496	ENSMUSG00000053522	Lgals7	Galectin-7|Pig1	lectin, galactose binding, soluble 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-79817898-2	chr17	79817798	79817998	+	736.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	78225.0	NM_178050	56298.0	Mm.175403	NM_019717	ENSMUSG00000059811	Atl2	2010110I21Rik|AA407293|AV334690|Aip-2|Arl6ip2	atlastin GTPase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-74209164-2	chr13	74209064	74209264	+	594.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177333)	promoter-TSS (NM_177333)	-464.0	NM_177333	211446.0	Mm.261859	NM_177333	ENSMUSG00000034152	Exoc3	2810050O03Rik|E430013E20Rik|Sec6|Sec6l1	exocyst complex component 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101508736-2	chr7	101508636	101508836	+	571.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001143849, exon 24 of 30)	exon (NM_001143849, exon 24 of 30)	33360.0	NR_029791	387157.0		NR_029791	ENSMUSG00000065446	Mir139	Mirn139|mir-139|mmu-mir-139	microRNA 139	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-24534324-4	chr12	24534220	24534420	+	804.229187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020614, intron 8 of 14)	intron (NM_020614, intron 8 of 14)	35739.0	NR_028341	21340.0	Mm.39082	NM_020614	ENSMUSG00000059669	Taf1b	4930408G01Rik|A230108M10Rik|TAFI68|Tafi86|p63	TATA-box binding protein associated factor, RNA polymerase I, B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132743237-2	chr4	132743137	132743337	+	647.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133888, intron 3 of 7)	MIR|SINE|MIR	-10691.0	NM_201368	381560.0	Mm.44558	NM_201368	ENSMUSG00000037752	Xkr8	4931440N07Rik|AI597014|Gm1031|XRG8|mXkr8	X-linked Kx blood group related 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-89639294-4	chr6	89639203	89639403	+	662.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4685.0	NM_001178060	232223.0	Mm.229332	NM_153162	ENSMUSG00000000811	Txnrd3	AI196535|TGR|TR2	thioredoxin reductase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-130248906-2	chr5	130248806	130249006	+	632.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023248, intron 3 of 4)	intron (NM_023248, intron 3 of 4)	6624.0	NM_023248	66711.0	Mm.280484	NM_023248	ENSMUSG00000025337	Sbds	4733401P19Rik|AI836084|CGI-97|SDS	SBDS ribosome maturation factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-17643129-3	chr2	17643033	17643233	+	873.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028757, intron 2 of 6)	L1MB3|LINE|L1	79619.0	NR_105847	102465964.0		NR_105847	ENSMUSG00000099161	Mir6419	Gm27713|mmu-mir-6419	microRNA 6419	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-96898366-4	chr5	96898260	96898460	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22912.0	NR_131152	666266.0	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-27673984-2	chr15	27673884	27674084	+	788.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198301, intron 1 of 6)	RMER17C|LTR|ERVK	7558.0	NM_001242424	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-127443745-1	chr1	127443645	127443845	+	602.0	f1_c57bl6.idr	intron (NM_145128, intron 12 of 17)	intron (NM_145128, intron 12 of 17)	234276.0	NM_028135	72160.0	Mm.281287	NM_028135	ENSMUSG00000026347	Tmem163	2610024A01Rik|A-cre|Act-Cre|SV31|Tg(ACTB-cre)2Mrt|actin-cre|cre<actin>	transmembrane protein 163	protein-coding	-1.36160253971502	-1.47814700641377	-1.48769298626929	-1.49553433834613	-1.35776282922893	-1.32587650976972	-1.48553198567192	-1.49413074007343	0.714701438935652	0.82496834672405	1
Merged-chr6-113690615-4	chr6	113690517	113690717	+	969.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 10 of 11)	RLTR35B_MM|LTR|ERVL	-6433.0	NM_001347356	381801.0	Mm.333322	NM_001033463	ENSMUSG00000056952	Tatdn2	AI646012|mKIAA0218	TatD DNase domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65034098-2	chr9	65033998	65034198	+	623.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028906, intron 1 of 20)	intron (NM_028906, intron 1 of 20)	1640.0	NM_028906	74388.0	Mm.202749	NM_028906	ENSMUSG00000032393	Dpp8	2310004I03Rik|4932434F09Rik|AI666706|DPP VIII	dipeptidylpeptidase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-63614767-4	chr9	63614647	63614847	+	922.9833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151671, intron 1 of 9)	intron (NR_151671, intron 1 of 9)	12101.0	NR_151671	66939.0	Mm.34338	NM_025857	ENSMUSG00000037257	Aagab	2310007F21Rik|p34	alpha- and gamma-adaptin binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-101861501-1	chr5	101861401	101861601	+	568.0	f1_c57bl6.idr	intron (NM_172882, intron 52 of 66)	intron (NM_172882, intron 52 of 66)	96371.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	-1.06997269762433	-1.30473905204845	-1.3145270772132	-1.32256725251374	-1.06385251204029	-1.30261794616352	-1.3123112828633	-1.32112806497905	0.0394047164033882	0.991001358494878	1
Merged-chr10-120702038-4	chr10	120701944	120702144	+	906.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63688.0	NR_038000	70874.0	Mm.427286	NR_038000	ENSMUSG00000044544	4921513I03Rik	-	RIKEN cDNA 4921513I03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-110982795-4	chr9	110982701	110982901	+	898.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028838, exon 9 of 9)	3' UTR (NM_028838, exon 9 of 9)	-6698.0	NR_152179	791282.0	Mm.406769	NR_152179	ENSMUSG00000057802	Gm10030	-	predicted gene 10030	ncRNA	3.04947306609178	3.77269425537989	3.64122992044022	3.44155259160699	4.61165491590503	4.74156744069258	4.4601687190943	4.94172000139526	1.62747176114376	0.00016163067893862	0.00455935318002874
Merged-chr14-103343997-4	chr14	103343899	103344099	+	992.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207215, intron 1 of 84)	intron (NM_207215, intron 1 of 84)	2801.0	NM_207215	105689.0	Mm.6478	NM_207215	ENSMUSG00000033004	Mycbp2	AU023734|AW107953|AW546647|C130061D10Rik|Pam|Phr1|R75243	MYC binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-40694471-4	chr11	40694358	40694558	+	939.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199274, intron 1 of 6)	intron (NM_001199274, intron 1 of 6)	745.0	NM_001199274	108645.0	Mm.293771	NM_134017	ENSMUSG00000042032	Mat2b	1110064C04Rik|2410018D16Rik|AI182287|AU022853|MAT-II|MATIIbeta|TGR	methionine adenosyltransferase II, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85591980-2	chr12	85591880	85592080	+	867.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F1|SINE|Alu	-7125.0	NM_001205052	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80789623-2	chr7	80789523	80789723	+	965.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016721, intron 2 of 37)	intron (NM_016721, intron 2 of 37)	13708.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-25069444-1	chr8	25069344	25069544	+	638.0	f1_balb.idr	intron (NM_031257, intron 3 of 11)	intron (NM_031257, intron 3 of 11)	-30482.0	NM_001081187	330723.0	Mm.334452	NM_001081187	ENSMUSG00000037406	Htra4	B430206E18Rik	HtrA serine peptidase 4	protein-coding	-1.53362919331644	-1.50201671710775	-1.51157659084044	-1.08120497225282	-1.53141005593807	-1.49994505258991	-1.50941244497383	-1.51802371459528	-1.94474658522739	0.577200604274218	1
Merged-chr16-17928083-6	chr16	17927911	17928111	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_153150, exon 1 of 9)	exon (NM_153150, exon 1 of 9)	208.0	NM_153150	13358.0	Mm.229291	NM_153150	ENSMUSG00000003528	Slc25a1	1300019P08Rik|2610100G11Rik|AI194714|Ctp|Dgsj|Slc20a3	solute carrier family 25 (mitochondrial carrier, citrate transporter), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-55836880-4	chr1	55836779	55836979	+	949.775024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-94362.0	NR_045837	329159.0	Mm.98697	NR_045837	ENSMUSG00000099950	9130227L01Rik	-	RIKEN cDNA 9130227L01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120742232-2	chr8	120742132	120742332	+	996.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301811, intron 2 of 8)	intron (NM_001301811, intron 2 of 8)	3593.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-34156532-5	chr8	34156444	34156644	+	789.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026432, intron 1 of 5)	intron (NM_026432, intron 1 of 5)	1981.0	NM_026432	67887.0	Mm.290353	NM_026432	ENSMUSG00000031532	Saraf	1810045K07Rik|Tmem66	store-operated calcium entry-associated regulatory factor	protein-coding	0.380302977786561	0.509612460106556	0.577328495889104	0.0262958923320647	0.0207942507237875	0.225769982629919	0.0313166265971702	0.0269771887412726	-3.04339497184829	0.148867161257043	1
Merged-chr10-128821777-4	chr10	128821685	128821885	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_153109)	promoter-TSS (NR_153109)	21.0	NR_153109	66118.0	Mm.235562	NM_025364	ENSMUSG00000078427	Sarnp	1110005A23Rik|Cip29	SAP domain containing ribonucleoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-39228815-4	chr6	39228712	39228912	+	853.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22039.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-18943559-4	chr10	18943439	18943639	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR41B|LTR|ERVL	68424.0	NM_001166402	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	4.91190946984633	5.62457093587009	5.37490426387627	6.20668319523928	5.07313672885591	5.47389537860041	4.98145337096446	5.77152783570648	-0.281327904398423	0.397023325139008	0.883497485228651
Merged-chr15-59052106-2	chr15	59052006	59052206	+	578.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144800, intron 3 of 14)	B4A|SINE|B4	29920.0	NM_001146180	211401.0	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-85377964-2	chr5	85377864	85378064	+	735.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F|LINE|L1	687619.0	NM_001345902	12617.0	Mm.4649	NM_007683	ENSMUSG00000029253	Cenpc1	CENP-C|Cenpc	centromere protein C1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-58568829-2	chr13	58568729	58568929	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_022317, intron 11 of 17)	intron (NM_022317, intron 11 of 17)	42048.0	NM_022317	114304.0	Mm.18188	NM_022317	ENSMUSG00000021553	Slc28a3	Cnt3	solute carrier family 28 (sodium-coupled nucleoside transporter), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-149566059-4	chr6	149566006	149566206	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360951)	promoter-TSS (NM_001360951)	24.0	NM_001360951	436100.0		NM_001360951		Gm21814	6620401J10Rik	predicted gene, 21814	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115489525-2	chr5	115489425	115489625	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	U4|snRNA|snRNA	-5041.0	NM_133760	75387.0	Mm.332616	NM_133760	ENSMUSG00000029524	Sirt4	4930596O17Rik	sirtuin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-120934139-4	chr9	120933996	120934196	+	926.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007614, intron 1 of 14)	CpG	518.0	NM_001165902	12387.0	Mm.291928	NM_007614	ENSMUSG00000006932	Ctnnb1	Bfc|Catnb|Mesc	catenin (cadherin associated protein), beta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-38565570-2	chr3	38565470	38565670	+	606.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-80754.0	NM_001167883	99696.0	Mm.290937	NM_001033198	ENSMUSG00000044864	Ankrd50	AI662170|E430012K20Rik|mKIAA1223|mKIAA3019	ankyrin repeat domain 50	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-99630234-2	chr12	99630134	99630334	+	748.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-2260.0	NR_045288	73457.0	Mm.383439	NR_045288	ENSMUSG00000100211	1700064M15Rik	-	RIKEN cDNA 1700064M15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-24415700-2	chr13	24415600	24415800	+	606.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007717, intron 1 of 15)	intron (NM_007717, intron 1 of 15)	578.0	NM_001284520	12763.0	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-51376829-4	chr2	51376739	51376939	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61061.0	NR_130155	73375.0	Mm.396227	NR_130155	ENSMUSG00000086007	1700057H21Rik	-	RIKEN cDNA 1700057H21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-28487656-2	chr6	28487556	28487756	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019776, intron 1 of 23)	intron (NM_019776, intron 1 of 23)	7308.0	NM_019776	56463.0	Mm.439987	NM_019776	ENSMUSG00000001424	Snd1	AL033314|Tudor-SN	staphylococcal nuclease and tudor domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-53492213-4	chr11	53492118	53492318	+	932.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12023.0	NM_183173	237761.0	Mm.145208	NM_183173	ENSMUSG00000044352	Sowaha	A830006N08Rik|Ankrd43	sosondowah ankyrin repeat domain family member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-35022013-4	chr18	35021928	35022128	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-67677.0	NM_010481	15526.0	Mm.209419	NM_010481	ENSMUSG00000024359	Hspa9	74kDa|Csa|Grp75|Hsc74|Hsp74|Hsp74a|Hspa9a|Mortalin|Mot-2|Mot2|Mthsp70|Pbp74	heat shock protein 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-104550239-1	chr11	104550139	104550339	+	1000.0	f0_balb.idr	promoter-TSS (NM_010858)	promoter-TSS (NM_010858)	381.0	NM_001285990	217232.0	Mm.89845	NM_145436	ENSMUSG00000020687	Cdc27	AI452358|APC3|BC023187	cell division cycle 27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116622332-2	chr11	116622232	116622432	+	897.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_172572, intron 1 of 18)	intron (NM_172572, intron 1 of 18)	1920.0	NM_001167680	217344.0	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91685291-2	chr16	91685191	91685391	+	634.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021720, intron 3 of 9)	intron (NM_021720, intron 3 of 9)	3437.0	NM_021720	60364.0	Mm.328698	NM_021720	ENSMUSG00000022960	Donson	1110025J21Rik|AI845729|ORF60	downstream neighbor of SON	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-172996388-2	chr2	172996263	172996463	+	815.416687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3754.0	NM_175112	66679.0	Mm.4113	NM_175112	ENSMUSG00000027509	Rae1	3230401I12Rik|D2Ertd342e|MNRP|MNRP41	ribonucleic acid export 1	protein-coding	-0.137861712531121	0.35176168370164	-0.274004278304376	-0.277594069501326	-0.282670011295891	-0.268305964756967	0.312886060735308	-0.276966816768195	-0.349610542756248	0.885685304811227	1
Merged-chr2-180179923-1	chr2	180179823	180180023	+	547.0	f1_balb.idr	promoter-TSS (NR_105972)	promoter-TSS (NR_105972)	-100.0	NR_105972	102466785.0		NR_105972	ENSMUSG00000098735	Mir7005	Gm27835|mmu-mir-7005	microRNA 7005	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90537772-2	chr2	90537672	90537872	+	646.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	42875.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-95232760-4	chr10	95232642	95232842	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001330138, intron 2 of 2)	intron (NM_001330138, intron 2 of 2)	-86917.0	NR_131146	628062.0		NR_131146	ENSMUSG00000112481	Gm29684	-	predicted gene, 29684	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-128313697-2	chr7	128313597	128313797	+	997.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-15566.0	NM_145590	233913.0	Mm.220880	NM_145590	ENSMUSG00000030780	BC017158	-	cDNA sequence BC017158	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-22115681-2	chr16	22115581	22115781	+	700.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_183029, intron 2 of 15)	intron (NM_183029, intron 2 of 15)	47618.0	NM_183029	319765.0	Mm.489442	NM_183029	ENSMUSG00000033581	Igf2bp2	C330012H03Rik|IMP-2|Imp2|Neilsen	insulin-like growth factor 2 mRNA binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5607240-2	chr17	5607140	5607340	+	668.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	114640.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-13245395-2	chr9	13245295	13245495	+	950.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001033181, exon 1 of 1)	exon (NM_001033181, exon 1 of 1)	346.0	NM_001033181	77532.0	Mm.459434	NM_001033181	ENSMUSG00000079083	Jrkl	C030035D04Rik|HHMJG	Jrk-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-73607678-4	chr12	73607557	73607757	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001313977, intron 2 of 14)	intron (NM_001313977, intron 2 of 14)	22861.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81496461-4	chr10	81496362	81496562	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134009)	promoter-TSS (NM_134009)	-99.0	NM_134009	103425.0	Mm.302791	NM_134009	ENSMUSG00000020238	Ncln	3100002P13Rik|AW120537	nicalin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-54900486-4	chr18	54900375	54900575	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360787, intron 2 of 8)	intron (NM_001360787, intron 2 of 8)	89705.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-88628784-3	chr5	88628705	88628905	+	881.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359208, intron 8 of 13)	intron (NM_001359208, intron 8 of 13)	45292.0	NM_001359209	52822.0	Mm.270469	NM_027530	ENSMUSG00000029291	Rufy3	2810428M05Rik|6330416M07Rik|AW455998|AW538594|D5Bwg0860e|Ripx|Rpipx	RUN and FYVE domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-85951650-2	chr10	85951550	85951750	+	545.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145422, intron 3 of 11)	intron (NM_145422, intron 3 of 11)	6143.0	NM_145422	28088.0	Mm.9257	NM_145422	ENSMUSG00000001783	Rtcb	AI255213|AI463255|D10Wsu52e|FAAP|HSPC117	RNA 2',3'-cyclic phosphate and 5'-OH ligase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-43107749-2	chr9	43107649	43107849	+	557.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001034863)	TTS (NM_001034863)	-2031.0	NM_027144	69632.0	Mm.275266	NM_027144	ENSMUSG00000059495	Arhgef12	2310014B11Rik|AU019857|Larg|mKIAA0382	Rho guanine nucleotide exchange factor (GEF) 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-51843014-4	chr13	51842897	51843097	+	948.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3678.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76782890-1	chr15	76782790	76782990	+	693.0	f0_balb.idr	intron (NM_198420, intron 1 of 10)	intron (NM_198420, intron 1 of 10)	35280.0	NM_001168288	223666.0	Mm.322931	NM_198420	ENSMUSG00000033697	Arhgap39	9530053N22|AI843066|D15Wsu169e|Kiaa1688|Porf-2	Rho GTPase activating protein 39	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-75055881-2	chr8	75055781	75055981	+	763.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001136259, intron 7 of 15)	intron (NM_001136259, intron 7 of 15)	22195.0	NM_011622	21968.0	Mm.1967	NM_011622	ENSMUSG00000042870	Tom1	-	target of myb1 trafficking protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-22363752-4	chr6	22363633	22363833	+	974.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7652.0	NM_138587	27999.0	Mm.490307	NM_138587	ENSMUSG00000029672	Fam3c	D6Wsu176e|Ilei	family with sequence similarity 3, member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81172058-2	chr10	81171958	81172158	+	927.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-4338.0	NM_021501	59004.0	Mm.34428	NM_021501	ENSMUSG00000004934	Pias4	PIASY|Pias-gamma|Piasg	protein inhibitor of activated STAT 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-75832469-6	chr10	75832394	75832594	+	984.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010361, exon 4 of 5)	exon (NM_010361, exon 4 of 5)	2387.0	NM_010361	14872.0	Mm.24118	NM_010361	ENSMUSG00000033318	Gstt2	AI266894|Yrs|mGSTT2	glutathione S-transferase, theta 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-21996789-2	chr11	21996689	21996889	+	881.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_011023, exon 5 of 5)	exon (NM_011023, exon 5 of 5)	4862.0	NM_011023	18423.0	Mm.129663	NM_011023	ENSMUSG00000005917	Otx1	A730044F23Rik|jv	orthodenticle homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-11768319-2	chr19	11768218	11768418	+	866.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-2097.0	NM_025606	94063.0	Mm.203928	NM_025606	ENSMUSG00000024683	Mrpl16	2310039D06Rik	mitochondrial ribosomal protein L16	protein-coding	-0.142930956539419	-0.129148521582691	-0.13367710905146	0.375542722408657	0.225249933761974	-0.128125908847792	-0.132679413880064	0.38225141561553	0.738229911457607	0.755157536030586	1
Merged-chr3-95883219-4	chr3	95883108	95883308	+	740.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033302)	promoter-TSS (NM_001033302)	-980.0	NM_001033302	229599.0	Mm.331218	NM_001033302	ENSMUSG00000038550	Ciart	Chrono|Gm129	circadian associated repressor of transcription	protein-coding	1.85558063832856	1.12204562074399	1.35215406111367	1.68828522081731	2.8607693553474	1.82002894515088	2.54869408828643	1.32263147189221	1.92965932550217	0.0719029055062591	0.404012193391374
Merged-chr17-56951069-3	chr17	56950947	56951147	+	825.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15659.0	NM_022328	64144.0	Mm.148748	NM_022328	ENSMUSG00000024212	Mllt1	AA407901|BAM11|ENL|LTG19	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-27541246-2	chr7	27541146	27541346	+	817.333313	f1_balb.idr|f1_c57bl6.idr	exon (NM_011116, exon 7 of 14)	exon (NM_011116, exon 7 of 14)	11972.0	NM_011116	18807.0	Mm.6483	NM_011116	ENSMUSG00000003363	Pld3	Sam-9	phospholipase D family, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-119386188-2	chr6	119386088	119386288	+	722.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_197985, intron 1 of 7)	PB1D7|SINE|Alu	2546.0	NM_001355692	68465.0	Mm.291826	NM_197985	ENSMUSG00000030168	Adipor2	1110001I14Rik|ADCR2|AI115388|AW554121|D6Ucla1e|Paqr2	adiponectin receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-17698099-4	chr10	17698000	17698200	+	987.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25128.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-111140897-2	chr5	111140797	111140997	+	684.583313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001267622, intron 5 of 22)	B1_Mus2|SINE|Alu	136753.0	NR_030482	735278.0		NR_030482	ENSMUSG00000076163	Mir701	Mirn701|mir-701|mmu-mir-701	microRNA 701	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-52297597-2	chr11	52297497	52297697	+	977.5833130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14583.0	NM_001313981	21414.0	Mm.31630	NM_009331	ENSMUSG00000000782	Tcf7	AI465550|TCF-1|Tcf1	transcription factor 7, T cell specific	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-151071030-3	chr4	151070907	151071107	+	744.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081557, intron 23 of 23)	intron (NM_001081557, intron 23 of 23)	-13054.0	NM_009498	22319.0	Mm.273930	NM_009498	ENSMUSG00000028955	Vamp3	D130027G05Rik|VAMP-3|ceb	vesicle-associated membrane protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67297711-4	chr10	67297601	67297801	+	831.700012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12420.0	NM_001036293	641340.0	Mm.136223	NM_001036293	ENSMUSG00000075000	Nrbf2	NRBF-2	nuclear receptor binding factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-125623316-4	chr7	125623170	125623370	+	963.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021887, intron 2 of 8)	intron (NM_021887, intron 2 of 8)	19841.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	1.86121593636377	1.28786633829826	1.87057950950346	2.1954966684323	2.43935420657917	1.55582495471326	2.64778888918321	2.3083066688924	1.14988534227606	0.239010999274745	0.735635286471347
Merged-chr8-46211066-4	chr8	46210974	46211174	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007450)	promoter-TSS (NM_007450)	-12.0	NM_007450	11739.0	Mm.16228	NM_007450	ENSMUSG00000031633	Slc25a4	AU019225|Ant1|mANC1	solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-13493079-3	chr9	13492991	13493191	+	625.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61730.0	NR_028271	18689.0	Mm.41972	NM_008835	ENSMUSG00000031802	Phxr4	Sp5	per-hexamer repeat gene 4	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-21718785-2	chr13	21718685	21718885	+	795.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_178206)	TTS (NM_178206)	1157.0	NM_178206	319152.0	Mm.377874	NM_178206	ENSMUSG00000101355	Hist1h3h	H3-291	histone cluster 1, H3h	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46530234-2	chr19	46530214	46530414	+	724.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_019718)	TTS (NM_019718)	28666.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0.472992691171582	0.515374828612268	0.501840935741891	0.880948404135199	1.90627987656296	0.76701955019259	1.34492290333456	0.709086396466197	3.3285169139749	0.0447515761934403	0.304266761145956
Merged-chr17-78298379-2	chr17	78298279	78298479	+	590.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_015800, intron 4 of 16)	intron (NM_015800, intron 4 of 16)	98131.0	NM_015800	50766.0	Mm.311912	NM_015800	ENSMUSG00000024074	Crim1	AU015004	cysteine rich transmembrane BMP regulator 1 (chordin like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-32530449-2	chr11	32530504	32530704	+	763.625	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-2662.0	NM_001359178	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-71570433-2	chr2	71570333	71570533	+	584.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_039557, intron 2 of 3).2	MIRb|SINE|MIR	-23679.0	NM_010054	13392.0	Mm.3896	NM_010054	ENSMUSG00000023391	Dlx2	AW121999|Dlx-2|Tes-1	distal-less homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-142629478-4	chr5	142629396	142629596	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178398)	promoter-TSS (NM_178398)	-88.0	NM_178398	74781.0	Mm.29432	NM_178398	ENSMUSG00000029578	Wipi2	1110018O08Rik|2510001I10Rik	WD repeat domain, phosphoinositide interacting 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-143731719-4	chr5	143731635	143731835	+	860.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029749, intron 1 of 17)	CpG	545.0	NM_029749	76800.0	Mm.259620	NM_029749	ENSMUSG00000051306	Usp42	2410140K03Rik|3110031A07Rik|A630018G05Rik|D5Ertd591e	ubiquitin specific peptidase 42	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-54883405-2	chr11	54883305	54883505	+	657.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	17022.0	NM_008248	15254.0	Mm.425	NM_008248	ENSMUSG00000020267	Hint1	AA673479|Hint|Ipk1|PKCI-1|PRKCNH1	histidine triad nucleotide binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-23846616-4	chr11	23846530	23846730	+	961.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48640.0	NM_172555	216578.0	Mm.470599	NM_172555	ENSMUSG00000020273	Papolg	9630006B20Rik	poly(A) polymerase gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-91747936-2	chr12	91747836	91748036	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 1 of 6)	intron (NM_175367, intron 1 of 6)	38500.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-66701658-2	chr1	66701529	66701729	+	639.0	f0_balb.idr|f0_c57.idr	exon (NM_001310642, exon 2 of 7)	exon (NM_001310642, exon 2 of 7)	798.0	NM_001310644	66646.0	Mm.240912	NM_025683	ENSMUSG00000026005	Rpe	2810429B02Rik|5730518J08Rik	ribulose-5-phosphate-3-epimerase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-53354032-2	chr15	53353932	53354132	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7849.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-50271581-2	chr11	50271481	50271681	+	782.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175334, intron 1 of 4)	B1_Mur4|SINE|Alu	20755.0	NM_175334	103806.0	Mm.51116	NM_175334	ENSMUSG00000050567	Maml1	AI644666|AW743257|D930008C07Rik|Mam-1|Mam1|mKIAA0200	mastermind like transcriptional coactivator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-83165412-4	chr8	83165291	83165491	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027758)	promoter-TSS (NM_027758)	39.0	NM_027758	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-25448132-4	chr8	25448022	25448222	+	949.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	HAL1|LINE|L1	-70637.0	NM_001079909	14182.0	Mm.265716	NM_010206	ENSMUSG00000031565	Fgfr1	AW208770|Eask|FGFR-I|FLG|Fgfr-1|Flt-2|Hspy|MFR|bFGF-R-1|c-fgr	fibroblast growth factor receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-72904683-1	chr17	72904583	72904783	+	563.0	f1_balb.idr	Intergenic	Intergenic	-13622.0	NM_029999	77889.0	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	0.571008255546597	0.0947470593095505	0.088271281381538	0.0832552325070162	0.0761356710140258	0.857425050317945	0.089702001008818	0.648213976274679	1.58228702605624	0.464884210303625	1
Merged-chr13-49220809-3	chr13	49220699	49220899	+	760.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F|LTR|ERVL-MaLR	-4773.0	NM_026738	68480.0	Mm.3336	NM_026738	ENSMUSG00000037960	Card19	1110007C09Rik|AI851695|Bincard	caspase recruitment domain family, member 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126772881-1	chr7	126772781	126772981	+	625.0	f0_balb.idr	intron (NM_024228, intron 9 of 9)	intron (NM_024228, intron 9 of 9)	-4094.0	NM_026875	66090.0	Mm.27114	NM_025347	ENSMUSG00000042675	Ypel3	0610043B10Rik|1190001G19Rik|Suap	yippee like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-72904018-4	chr17	72903914	72904114	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14291.0	NM_029999	77889.0	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70865802-4	chr8	70865684	70865884	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	7706.0	NM_026964	234388.0	Mm.295791	NM_026964	ENSMUSG00000007721	Ccdc124	1810023B24Rik	coiled-coil domain containing 124	protein-coding	5.42519561854781	5.0450438827386	4.71539469719959	4.68140237500369	5.37568787797618	5.27206242715958	5.08266012263895	4.51592204842517	0.109917882418995	0.747995340621024	0.998431161219273
Merged-chr17-83220198-2	chr17	83220098	83220298	+	837.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_134117, intron 2 of 6)	intron (NM_134117, intron 2 of 6)	4915.0	NM_134117	106522.0	Mm.311974	NM_134117	ENSMUSG00000024247	Pkdcc	AI115348|AW548124|Adtk1|ESTM17|MAd1|Sgk493|Vlk|X83346	protein kinase domain containing, cytoplasmic	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-118131145-1	chr14	118131045	118131245	+	542.0	f1_balb.idr	intron (NM_029578, intron 1 of 11)	intron (NM_029578, intron 1 of 11)	1620.0	NM_029578	76355.0	Mm.251537	NM_029578	ENSMUSG00000022130	Tgds	2610017J16Rik|2610025M23Rik|AI648925	TDP-glucose 4,6-dehydratase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53041515-2	chr4	53041415	53041615	+	930.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 43 of 49)	intron (NM_013454, intron 43 of 49)	29635.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-30576286-2	chr14	30576186	30576386	+	796.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	4137.0	NR_037237	100526475.0		NR_037237	ENSMUSG00000093156	Mir3076	mir-3076|mmu-mir-3076	microRNA 3076	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-59331907-4	chr4	59331808	59332008	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163288, intron 13 of 16)	intron (NM_001163288, intron 13 of 16)	71857.0	NR_105031	101055769.0	Mm.421401	NR_105031		Gm12596	-	predicted gene 12596	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-31111231-4	chr7	31111122	31111322	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001276269)	promoter-TSS (NM_001276269)	-225.0	NM_001276269	15451.0	Mm.19182	NM_008281	ENSMUSG00000001249	Hpn	Hlb320	hepsin	protein-coding	4.66066645285272	5.22266124748232	3.15556713177936	3.91799857265304	4.39218093945211	3.87647210556158	5.07314549286572	5.09443621009686	0.315466541656583	0.520171851037979	0.947641799425091
Merged-chr2-4989182-2	chr2	4989082	4989282	+	609.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M5|LINE|L1	13060.0	NM_026754	68527.0	Mm.27791	NM_026754	ENSMUSG00000026668	Ucma	1110017I16Rik|AW121955|Grp	upper zone of growth plate and cartilage matrix associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-16150305-2	chr19	16150205	16150405	+	589.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008139, intron 1 of 6)	B1_Mur3|SINE|Alu	-13793.0	NR_033228	595139.0	Mm.405662	NR_033228		E030024N20Rik	9030417F11Rik|Ppia-ps8	peptidylprolyl isomerase A pseudogene 8	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-8691766-8	chr3	8691683	8691883	+	981.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-24745.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-96456748-2	chr7	96456648	96456848	+	678.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011858, intron 3 of 32)	intron (NM_011858, intron 3 of 32)	-114784.0	NR_046043	670727.0	Mm.421352	NR_046043	ENSMUSG00000085751	Gm15412	-	predicted gene 15412	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-90903229-2	chr5	90903127	90903327	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_009140)	promoter-TSS (NM_009140)	-672.0	NM_009140	20310.0	Mm.4979	NM_009140	ENSMUSG00000058427	Cxcl2	CINC-2a|GROb|Gro2|MIP-2|MIP-2a|Mgsa-b|Mip2|Scyb|Scyb2	chemokine (C-X-C motif) ligand 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-106549251-4	chr1	106549140	106549340	+	975.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009741, intron 1 of 1)	intron (NM_009741, intron 1 of 1)	-2609.0	NR_106164	102466254.0		NR_106164	ENSMUSG00000098344	Mir3473f	Gm27846|mmu-mir-3473f	microRNA 3473f	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-93166036-1	chr1	93165936	93166136	+	780.0	f0_balb.idr	Intergenic	L1MB3|LINE|L1	-2387.0	NM_001310428	381284.0	Mm.193346	NM_001310428	ENSMUSG00000084989	Crocc2	E030010N08Rik|Gm976	ciliary rootlet coiled-coil, rootletin family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-20679472-1	chr17	20679372	20679572	+	541.0	f1_balb.idr	Intergenic	Lx2|LINE|L1	-8036.0	NM_134191	171225.0	Mm.377184	NM_134191	ENSMUSG00000042848	Vmn1r226	V1re2	vomeronasal 1 receptor 226	protein-coding	-1.13146769101922	-1.10460487238646	-1.11735372523027	-1.12713099301154	-1.13082009585647	-0.300663969208598	-1.11446766439333	-1.12595147812057	3.06518455575839	0.353555291099784	1
Merged-chr18-80707770-4	chr18	80707663	80707863	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198429, intron 1 of 9)	CpG	410.0	NM_001164111	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-56721215-4	chr19	56721136	56721336	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1136.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-54682204-2	chr3	54682104	54682304	+	622.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR35B_MM|LTR|ERVL	-10611.0	NR_152185	56790.0	Mm.486375	NM_019995	ENSMUSG00000027751	Supt20	AA667204|AI450544|D3Ertd300e|Fam48a|Supt20h|p38IP	suppressor of Ty 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-31974398-4	chr2	31974320	31974520	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172268)	promoter-TSS (NM_172268)	-30.0	NM_172268	227720.0	Mm.289686	NM_172268	ENSMUSG00000001855	Nup214	BC039282|CAN|D2H9S46E	nucleoporin 214	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-4845211-2	chr7	4845111	4845311	+	825.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172737)	promoter-TSS (NM_172737)	-515.0	NM_172737	232813.0	Mm.44666	NM_172737	ENSMUSG00000053550	Shisa7	ckamp59	shisa family member 7	protein-coding	-0.572027545766972	-0.51805440073177	-0.689967662438247	-0.6918450957314	-0.458942162126466	-0.370784641648077	-0.689427952774705	-0.6915182936753	1.0852046894377	0.678015718738702	1
Merged-chr16-25834933-2	chr16	25834833	25835033	+	781.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001127262, intron 2 of 10)	intron (NM_001127262, intron 2 of 10)	33017.0	NM_001127264	22061.0	Mm.20894	NM_011641	ENSMUSG00000022510	Trp63	AI462811|Ket|P51/P63|P63|P73l|Tp63|Trp53rp1	transformation related protein 63	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129360317-4	chr2	129360219	129360419	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9583.0	NR_015474	329514.0	Mm.207315	NM_177848	ENSMUSG00000074805	Il1bos	9430083I22|Gm14047	interleukin 1 beta, opposite strand	ncRNA	4.63375818934694	4.52266583734976	5.02044997272599	5.12771440010196	4.84180783358434	4.42913985195928	5.16023502721122	5.1194923558201	0.0848995716749724	0.805774080677147	0.998431161219273
Merged-chr3-30993268-4	chr3	30993165	30993365	+	946.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-2506.0	NM_008857	18759.0	Mm.291554	NM_008857	ENSMUSG00000037643	Prkci	2310021H13Rik|AI427505|PKClambda|Pkci|Pkcl|Prkcl|aPKClambda|mKIAA4165	protein kinase C, iota	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-177236918-4	chr1	177236822	177237022	+	925.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011785, intron 1 of 12)	B3|SINE|B2	11845.0	NM_011785	23797.0	Mm.235194	NM_011785	ENSMUSG00000019699	Akt3	AI851531|D930002M15Rik|Nmf350	thymoma viral proto-oncogene 3	protein-coding	2.64682850371705	3.12532766649196	3.32678912539119	4.00673048881022	3.89180177908207	2.53942595709825	4.18988934443991	2.81918944697631	0.265914459424471	0.683167458901927	0.995882295196263
Merged-chr4-130936473-2	chr4	130936373	130936573	+	578.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_010686)	TTS (NM_010686)	-7912.0	NM_010769	17180.0	Mm.271796	NM_010769	ENSMUSG00000040533	Matn1	CMP|Crtm|Mat1|matrilin-1	matrilin 1, cartilage matrix protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-50846921-2	chr14	50846821	50847021	+	883.583374	f1_balb.idr|f1_c57bl6.idr	exon (NM_009351, exon 19 of 55)	exon (NM_009351, exon 19 of 55)	23633.0	NM_009351	21745.0	Mm.318736	NM_009351	ENSMUSG00000006281	Tep1	Tp1	telomerase associated protein 1	protein-coding	0.435267963841046	-0.352881904902314	-0.357409263023352	-0.3609063077737	0.129059533787068	-0.351862170694137	-0.356410217932976	-0.360295121256715	-0.934864263136997	0.725073910931951	1
Merged-chr9-118841696-2	chr9	118841596	118841796	+	579.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 7 of 13)	intron (NM_001113514, intron 7 of 13)	-84840.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-88231347-4	chr7	88231256	88231456	+	975.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46729.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-161131479-4	chr1	161131331	161131531	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039482)	promoter-TSS (NM_001039482)	48.0	NM_001039482	226541.0	Mm.255165	NM_144876	ENSMUSG00000026705	Klhl20	AI504637|D930050H05Rik|Kleip|mKIAA4210	kelch-like 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-112623987-4	chr12	112623917	112624117	+	989.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007421, intron 1 of 12)	intron (NM_007421, intron 1 of 12)	3970.0	NM_007421	11565.0	Mm.3440	NM_007421	ENSMUSG00000011148	Adssl1	AI528595|Adss|Adss1	adenylosuccinate synthetase like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-112781819-2	chr6	112781719	112781919	+	926.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_080448, intron 4 of 21)	intron (NM_080448, intron 4 of 21)	-85149.0	NM_001167730	58186.0	Mm.103812	NM_021385	ENSMUSG00000030254	Rad18	2810024C04Rik|Rad18sc	RAD18 E3 ubiquitin protein ligase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91187620-4	chr2	91187420	91187620	+	721.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355279, intron 7 of 9)	intron (NM_001355279, intron 7 of 9)	-4473.0	NM_145527	228355.0	Mm.36410	NM_145527	ENSMUSG00000040687	Madd	9630059K23Rik|IG20	MAP-kinase activating death domain	protein-coding	0.664731578843944	0.316697224696742	0.310276114535259	0.721856945758359	0.441302011907057	0.92751519772671	0.311691956351542	0.727770048622739	0.671620153190329	0.708299945737467	1
Merged-chr6-97482869-2	chr6	97482769	97482969	+	748.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	4951.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-17770750-4	chr12	17770645	17770845	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361645, intron 2 of 4)	intron (NM_001361645, intron 2 of 4)	79936.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-122894739-4	chr10	122894638	122894838	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110218, intron 6 of 9)	intron (NM_001110218, intron 6 of 9)	90986.0	NR_029527	387251.0		NR_029527	ENSMUSG00000065406	Mirlet7i	Mirnlet7i|let-7i|mmu-let-7i	microRNA let7i	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5806563-2	chr19	5806463	5806663	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3891.0	NR_002847	72289.0	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-3356081-4	chr5	3355978	3356178	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 2 of 7)	intron (NM_009873, intron 2 of 7)	12185.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-82470778-4	chr12	82470681	82470881	+	966.658325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID|SINE|ID	-146144.0	NM_001310478	50779.0	Mm.126176	NM_015812	ENSMUSG00000021219	Rgs6	-	regulator of G-protein signaling 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117834530-2	chr11	117834430	117834630	+	789.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027827, intron 4 of 10)	ID_B1|SINE|B4	-8516.0	NM_009387	21877.0	Mm.2661	NM_009387	ENSMUSG00000025574	Tk1	D530002A18Rik|Tk-1|Tk1a|Tk1b	thymidine kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-39418060-3	chr1	39417952	39418152	+	923.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018775, intron 2 of 19)	intron (NM_018775, intron 2 of 19)	50201.0	NM_001252218	114641.0	Mm.379302	NM_053257	ENSMUSG00000073702	Rpl31	Dts	ribosomal protein L31	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111433732-2	chr12	111433632	111433832	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-8929.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-34522435-3	chr1	34522338	34522538	+	861.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13210.0	NM_007685	12627.0	Mm.2531	NM_007685	ENSMUSG00000026124	Cfc1	AV265756|b2b970Clo|cryptic	cripto, FRL-1, cryptic family 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-93611804-2	chr1	93611704	93611904	+	875.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145519, intron 19 of 26)	intron (NM_145519, intron 19 of 26)	23923.0	NM_021537	59041.0	Mm.28761	NM_021537	ENSMUSG00000026277	Stk25	1500019J11Rik|AU018434|C86992|Ste20-like|Ysk1	serine/threonine kinase 25 (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-69514139-2	chr12	69514043	69514243	+	656.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38593.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	1.47287568331956	1.00693221210956	1.75624157296651	1.39445570650582	1.84469374674073	2.70430822310212	1.77162307605452	0.966717965072531	1.53482145287468	0.19101952841608	0.669546561020494
Merged-chr5-137877959-2	chr5	137877859	137878059	+	723.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6201.0	NM_001024932	545812.0	Mm.332769	NM_001024932	ENSMUSG00000066682	Pilrb2	EG545812	paired immunoglobin-like type 2 receptor beta 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-5806513-4	chr18	5806420	5806620	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	213873.0	NM_001360981	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	3.10862284393107	4.75599923599661	4.74172115728831	4.44258809835707	4.5917848870628	4.47127810339179	5.37088178547702	4.01205076832583	0.388691442088299	0.407650676017064	0.891845785649541
Merged-chr18-49642938-4	chr18	49642813	49643013	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	112688.0	NM_001170960	68857.0	Mm.96010	NM_026854	ENSMUSG00000024505	Dtwd2	1190002H09Rik|8030470C17Rik|AI414673|BB115449	DTW domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-137871622-4	chr4	137871512	137871712	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199307, intron 1 of 19)	intron (NM_199307, intron 1 of 19)	9375.0	NM_199307	230857.0	Mm.401062	NM_199307	ENSMUSG00000057530	Ece1	AW322500|ECE-1|ECE-1a|ECE-1b|ECE-1d	endothelin converting enzyme 1	protein-coding	6.88555211641181	6.83598455320318	7.31712776466698	7.07331292483505	7.7199603339063	7.74950911165618	8.04252995744807	7.57242530119002	0.771800547984933	3.06738612463444e-06	0.000168818801483321
Merged-chr11-75142229-2	chr11	75142129	75142329	+	705.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001002764, intron 14 of 18)	intron (NM_001002764, intron 14 of 18)	25923.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-107364316-4	chr4	107364211	107364411	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3473.0	NM_028355	72787.0	Mm.28478	NM_028355	ENSMUSG00000028614	Ndc1	2810475A17Rik|AI450313|Tmem48|sks	NDC1 transmembrane nucleoporin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129811576-4	chr4	129811473	129811673	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-8906.0	NM_008974	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	-0.523333620327393	-0.638434422416243	-0.486927434101197	-0.500602444692862	-0.519949259116625	-0.465221211241608	-0.483019773603878	-0.642575818295075	0.126484334742942	0.956359423287338	1
Merged-chr6-29696123-4	chr6	29696014	29696214	+	902.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301407, intron 1 of 7)	intron (NM_001301407, intron 1 of 7)	1900.0	NM_146173	232670.0	Mm.225289	NM_146173	ENSMUSG00000001763	Tspan33	1300010A20Rik|Pen	tetraspanin 33	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-23231852-3	chr16	23231691	23231891	+	846.833374	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252505, intron 1 of 7)	intron (NM_001252505, intron 1 of 7)	5770.0	NM_001252505	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-40829168-4	chr4	40829138	40829338	+	915.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022305, intron 1 of 5)	B2_Mm2|SINE|B2	20900.0	NR_039584	100628614.0		NR_039584	ENSMUSG00000096377	Mir5123	mmu-mir-5123|mu-mir-5123	microRNA 5123	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-108629179-2	chr5	108629078	108629278	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_028223)	promoter-TSS (NM_028223)	599.0	NM_001359924	231580.0	Mm.276647	NM_153569	ENSMUSG00000062234	Gak	D130045N16Rik	cyclin G associated kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35210346-4	chr17	35210228	35210428	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4977.0	NM_010735	16992.0	Mm.87787	NM_010735	ENSMUSG00000024402	Lta	LT|LT-[a]|LT-alpha|LT[a]|LTalpha|Ltx|TNF-beta|TNFSF1|Tnfb|Tnfsf1b|Tnlg1e|hlb382	lymphotoxin A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-112305458-2	chr5	112305358	112305558	+	673.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009419, intron 2 of 6)	L2b|LINE|L2	-20911.0	NM_018783	54723.0	Mm.172947	NM_018783	ENSMUSG00000029345	Tfip11	2810002G02Rik|AF097181|AW046167|Srr1|TIP33|Tip39	tuftelin interacting protein 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-105019893-4	chr3	105019787	105019987	+	967.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030249, intron 3 of 5)	intron (NM_030249, intron 3 of 5)	33066.0	NM_001163332	80281.0	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-59207115-5	chr12	59206969	59207169	+	944.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033156, intron 1 of 3)	B1F|SINE|Alu	12414.0	NM_001033156	70611.0	Mm.311026	NM_001033156	ENSMUSG00000035329	Fbxo33	5730501N20Rik|AI642135	F-box protein 33	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-74774360-3	chr14	74774243	74774443	+	823.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033439, intron 19 of 19)	intron (NM_001033439, intron 19 of 19)	42046.0	NM_016903	13885.0	Mm.38055	NM_016903	ENSMUSG00000021996	Esd	Es-10|Es10|FGH|sid478	esterase D/formylglutathione hydrolase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-96605393-4	chr10	96605278	96605478	+	692.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11623.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-101035670-2	chr9	101035570	101035770	+	980.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025835)	promoter-TSS (NM_025835)	-786.0	NM_025835	66904.0	Mm.335385	NM_025835	ENSMUSG00000032527	Pccb	1300012P06Rik|AI314687|R74805	propionyl Coenzyme A carboxylase, beta polypeptide	protein-coding	1.66855379489569	2.00225281600643	0.906121789652342	1.86362998345477	1.47959440222453	0.927347941419075	0.909989800849159	1.56114852849965	-1.41789990052687	0.285475784966053	0.79013454422523
Merged-chr3-137956055-4	chr3	137955950	137956150	+	997.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011932, intron 3 of 8)	intron (NM_011932, intron 3 of 8)	25499.0	NM_001310753	26377.0	Mm.254835	NM_011932	ENSMUSG00000028159	Dapp1	Bam32	dual adaptor for phosphotyrosine and 3-phosphoinositides 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10940942-3	chr19	10940838	10941038	+	731.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_023731)	TTS (NM_023731)	3778.0	NM_009962	14764.0	Mm.470721	NM_009962	ENSMUSG00000034117	Ptgdr2	Crth2|Gpr44|Grp45	prostaglandin D2 receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166303092-2	chr2	166302992	166303192	+	677.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1L|LTR|ERVL-MaLR	29184.0	NR_033467	670775.0	Mm.384326	NR_033467	ENSMUSG00000084840	Gm11468	-	predicted gene 11468	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-130862235-3	chr2	130862139	130862339	+	652.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-22094.0	NM_029432	228602.0	Mm.271990	NM_028367	ENSMUSG00000027309	4930402H24Rik	2810487F15Rik|AI413763|C78926	RIKEN cDNA 4930402H24 gene	protein-coding	1.30063873630659	1.25482071178456	1.22282644481676	2.00102789694721	1.74619831679909	1.44785509687018	1.68255379401544	1.50673809666199	0.34776304122448	0.7586331141151	0.998431161219273
Merged-chr18-11946519-2	chr18	11946419	11946619	+	745.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001146287)	TTS (NM_001146287)	-106081.0	NR_035447	100316686.0		NR_035447	ENSMUSG00000084565	Mir1901	Mirn1901|mmu-mir-1901	microRNA 1901	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-30255943-3	chr14	30255794	30255994	+	800.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083616, intron 3 of 46)	intron (NM_001083616, intron 3 of 46)	97592.0	NM_001302637	12289.0	Mm.9772	NM_028981	ENSMUSG00000015968	Cacna1d	8430418G19Rik|C79217|Cach3|Cacn4|Cacnl1a2|Cav1.3|Cchl1a|Cchl1a2|D-LTCC	calcium channel, voltage-dependent, L type, alpha 1D subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-73781574-2	chr12	73781474	73781674	+	620.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-119750.0	NM_001313920	15251.0	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81623753-2	chr10	81623653	81623853	+	621.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163430, intron 6 of 8)	intron (NM_001163430, intron 6 of 8)	3569.0	NM_001163430	50721.0	Mm.25643	NM_181586	ENSMUSG00000034748	Sirt6	2810449N18Rik|AI043036|Sir2l6	sirtuin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-15278434-2	chr9	15278334	15278534	+	814.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_144933, intron 1 of 11)	intron (NM_144933, intron 1 of 11)	1433.0	NM_144933	234959.0	Mm.44151	NM_144933	ENSMUSG00000031935	Med17	77kDa|C330002H14Rik|Crsp6|Trap80	mediator complex subunit 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-20123559-4	chr10	20123427	20123627	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008580, intron 23 of 29)	intron (NM_008580, intron 23 of 29)	-25393.0	NM_008635	17761.0	Mm.20928	NM_008635	ENSMUSG00000019996	Map7	E-MAP-115|MAP-7|Mtap7|R75000|mshi|mste|ste	microtubule-associated protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-17562076-4	chr16	17561977	17562177	+	985.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029053)	promoter-TSS (NM_029053)	192.0	NM_001159561	18440.0	Mm.8032	NM_011028	ENSMUSG00000022758	P2rx6	P2rxl1|P2x6|P2xm	purinergic receptor P2X, ligand-gated ion channel, 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-60080833-2	chr10	60080733	60080933	+	898.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026937, intron 9 of 10)	intron (NM_026937, intron 9 of 10)	-25424.0	NM_052994	94214.0	Mm.153429	NM_052994	ENSMUSG00000058297	Spock2	AA407235|Gcap26|mKIAA0275	sparc/osteonectin, cwcv and kazal-like domains proteoglycan 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125315443-2	chr6	125315343	125315543	+	593.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	-1558.0	NM_010736	17000.0	Mm.3122	NM_010736	ENSMUSG00000030339	Ltbr	AI256028|LTbetaR|Ltar|TNF-R-III|TNFCR|TNFR-RP|TNFR2-RP|TNFRrp|Tnfbr|Tnfrsf3	lymphotoxin B receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-50458109-4	chr6	50458011	50458211	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1757.0	NM_001347213	71720.0	Mm.44153	NM_027881	ENSMUSG00000029822	Osbpl3	1200014M06Rik|6720421I08Rik|A530055M08|ORP-3|ORP3|OSBP3	oxysterol binding protein-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105299159-2	chr8	105299059	105299259	+	911.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_148952, intron 4 of 9)	intron (NM_148952, intron 4 of 9)	1496.0	NM_148952	104394.0	Mm.34554	NM_148952	ENSMUSG00000014859	E2f4	2010111M04Rik|AI427446	E2F transcription factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-29597296-3	chr16	29597139	29597339	+	946.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133752, intron 5 of 28)	intron (NM_133752, intron 5 of 28)	17905.0	NM_001199177	74143.0	Mm.274285	NM_133752	ENSMUSG00000038084	Opa1	1200011N24Rik|AI225888|AI847218|lilr3|mKIAA0567	OPA1, mitochondrial dynamin like GTPase	protein-coding	1.7916158107968	1.00682202541577	1.29982213435424	0.755865022809585	1.59438740102667	0.783292667359467	1.55866248866615	0.757744160093923	-0.143599697903104	0.922248629518437	0.998431161219273
Merged-chr18-4325347-4	chr18	4325243	4325443	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	27610.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-109253037-2	chr3	109252937	109253137	+	659.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-87646.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-66841673-2	chr4	66841569	66841769	+	764.5	f0_balb.idr|f1_balb.idr	3' UTR (NM_021297, exon 3 of 3)	3' UTR (NM_021297, exon 3 of 3)	14118.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	0.534466751869192	2.09435949475256	0.931046172133714	0.582684563196351	0.541941821808022	3.21425391528737	1.75768456437556	0.587499548572766	1.79613400637998	0.494642074652297	0.935679785535167
Merged-chr12-80947480-2	chr12	80947380	80947580	+	872.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001079694, intron 3 of 7)	intron (NM_001079694, intron 3 of 7)	1981.0	NM_001347415	20384.0	Mm.43331	NM_009159	ENSMUSG00000021134	Srsf5	Sfrs5	serine/arginine-rich splicing factor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-83675807-4	chr7	83675725	83675925	+	619.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360088, intron 6 of 18)	intron (NM_001360088, intron 6 of 18)	-20330.0	NM_001360089	16170.0	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25245763-2	chr7	25245663	25245863	+	556.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010155, intron 2 of 3)	intron (NM_010155, intron 2 of 3)	4995.0	NM_010155	13875.0	Mm.8068	NM_010155	ENSMUSG00000040857	Erf	-	Ets2 repressor factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-40248915-3	chr12	40248822	40249022	+	756.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25558.0	NR_045157	629820.0	Mm.435540	NR_045157	ENSMUSG00000035983	Gm7008	EG629820	predicted gene 7008	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-108636394-4	chr5	108636283	108636483	+	951.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359426, intron 1 of 9)	intron (NM_001359426, intron 1 of 9)	6573.0	NM_001359426	72392.0	Mm.258324	NM_028223	ENSMUSG00000013495	Tmem175	3010001K23Rik|AI504381|mTMEM175	transmembrane protein 175	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-8784923-3	chr16	8784823	8785023	+	772.527771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-45177.0	NM_001081400	69053.0	Mm.390868	NM_001081400	ENSMUSG00000022507	1810013L24Rik	1110017P05Rik|3010002C02Rik|AA792997|AW124177|Gm19906|R74903	RIKEN cDNA 1810013L24 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16877824-2	chr7	16877724	16877924	+	651.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081655, intron 1 of 3)	intron (NM_001081655, intron 1 of 3)	2507.0	NM_001081655	629378.0	Mm.491123	NM_001081655	ENSMUSG00000078794	Dact3	EG666671|naa-3	dishevelled-binding antagonist of beta-catenin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-67272546-4	chr14	67272431	67272631	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360202, intron 6 of 15)	intron (NM_001360202, intron 6 of 15)	37887.0	NM_001360202	13592.0	Mm.319947	NM_010095	ENSMUSG00000022053	Ebf2	D14Ggc1e|EBF-2|Mmot1|O/E-3|OE-3	early B cell factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-99947208-6	chr4	99947085	99947285	+	914.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028132, intron 1 of 10)	intron (NM_028132, intron 1 of 10)	17734.0	NM_028132	72157.0	Mm.217764	NM_028132	ENSMUSG00000025791	Pgm2	2610020G18Rik|AA407108|AI098105|Pgm-2|Pgm1	phosphoglucomutase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-100675120-4	chr5	100674999	100675199	+	831.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027978)	promoter-TSS (NM_027978)	-843.0	NM_027978	71883.0	Mm.260661	NM_027978	ENSMUSG00000029319	Coq2	2310002F18Rik|PHB:PPT	coenzyme Q2 4-hydroxybenzoate polyprenyltransferase	protein-coding	1.34973981436208	1.39749722062046	1.05202115547214	1.1806760103921	1.1357436337454	1.65138517966411	1.05819317144212	1.31751114165055	0.254858272376875	0.835149863371301	0.998431161219273
Merged-chr8-69987980-2	chr8	69987880	69988080	+	572.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286450, intron 1 of 12)	intron (NM_001286450, intron 1 of 12)	8404.0	NM_001286450	234366.0	Mm.270044	NM_145596	ENSMUSG00000036180	Gatad2a	1110066C11Rik|BC031407|C80248	GATA zinc finger domain containing 2A	protein-coding	0.72568331904747	0.973129097561867	0.473026604704955	0.772297767436947	0.6059491084611	1.10512114868491	0.474708984766819	0.900304416912294	0.280955493318918	0.860136942949926	1
Merged-chr4-134269764-2	chr4	134269664	134269864	+	639.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-15658.0	NM_001099296	72690.0	Mm.100168	NM_001099296	ENSMUSG00000050105	Grrp1	2810043G13Rik|Fam110d	glycine/arginine rich protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-80220992-2	chr17	80220892	80221092	+	560.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur2|SINE|Alu	-3459.0	NM_026053	67242.0	Mm.279985	NM_026053	ENSMUSG00000055760	Gemin6	2610019B15Rik|2810470M17Rik	gem nuclear organelle associated protein 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-22390989-6	chr6	22390839	22391039	+	900.488892	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-34858.0	NM_138587	27999.0	Mm.490307	NM_138587	ENSMUSG00000029672	Fam3c	D6Wsu176e|Ilei	family with sequence similarity 3, member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-170555084-4	chr1	170554975	170555175	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109985, intron 1 of 9)	intron (NM_001109985, intron 1 of 9)	2035.0	NM_027528	70729.0	Mm.409310	NM_027528	ENSMUSG00000038473	Nos1ap	6330408P19Rik|Capon	nitric oxide synthase 1 (neuronal) adaptor protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-121041109-4	chr4	121040991	121041191	+	994.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007741, intron 2 of 31)	intron (NM_007741, intron 2 of 31)	1525.0	NM_007741	12840.0	Mm.269384	NM_007741	ENSMUSG00000028626	Col9a2	AI427499|Col9a-2	collagen, type IX, alpha 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-109335674-4	chr3	109335597	109335797	+	935.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-4986.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-60982772-3	chr8	60982652	60982852	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173873, intron 1 of 12)	CpG	559.0	NM_173873	12725.0	Mm.25263	NM_007711	ENSMUSG00000004319	Clcn3	Clc3	chloride channel, voltage-sensitive 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-100160000-4	chr10	100159889	100160089	+	814.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	144168.0	NM_013598	17311.0	Mm.45124	NM_013598	ENSMUSG00000019966	Kitl	Clo|Con|Gb|Kitlg|Mgf|SCF|SF|SLF|Sl|blz|contrasted	kit ligand	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-45758120-4	chr17	45758024	45758224	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152153, intron 2 of 4)	URR1A|DNA|hAT-Charlie	23618.0	NR_152153	433111.0	Mm.213441	NR_152153	ENSMUSG00000097727	F630040K05Rik	-	RIKEN cDNA F630040K05 gene	ncRNA	6.79129746722259	7.34196474310562	7.0869123628864	6.76880944954602	7.3944188876348	7.96707903019157	7.67279306518586	7.55555646561078	0.67756637500405	0.000162284260892695	0.0045634841301341
Merged-chr8-3631722-4	chr8	3631611	3631811	+	977.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357168, intron 1 of 18)	intron (NM_001357168, intron 1 of 18)	602.0	NM_011503	20911.0	Mm.7247	NM_011503	ENSMUSG00000004626	Stxbp2	C79054|Munc-18-2|Munc-18b|Munc18b|Sxtbp2|Sxtp2|Unc18-2|Unc18b|muSec1	syntaxin binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118354797-2	chr11	118354697	118354897	+	793.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011594, intron 1 of 4)	intron (NM_011594, intron 1 of 4)	614.0	NM_011594	21858.0	Mm.206505	NM_011594	ENSMUSG00000017466	Timp2	D11Bwg1104e|Timp-2	tissue inhibitor of metalloproteinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-38536054-4	chr2	38535974	38536174	+	946.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159631, intron 1 of 9)	MIR3|SINE|MIR	24198.0	NM_001159631	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-151287725-4	chr1	151287626	151287826	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56760.0	NM_001359262	117198.0	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-146118229-4	chr3	146118132	146118332	+	967.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3559.0	NM_134160	171166.0	Mm.114683	NM_134160	ENSMUSG00000036853	Mcoln3	6720490O21Rik|TRPML3|Va	mucolipin 3	protein-coding	3.57037483126881	4.17572039620657	4.17135287343781	4.57371170190531	4.21036920457722	5.24654690964193	4.81007545257147	4.59513873395869	0.756687477452191	0.0697321439044457	0.396850486157895
Merged-chr6-48539562-4	chr6	48539462	48539662	+	925.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347164, intron 2 of 2)	intron (NM_001347164, intron 2 of 2)	1993.0	NM_133764	76252.0	Mm.30214	NM_133764	ENSMUSG00000039347	Atp6v0e2	0610006O14Rik|NM9.2	ATPase, H+ transporting, lysosomal V0 subunit E2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84667229-2	chr8	84667129	84667329	+	547.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-4377.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88465277-4	chr3	88465183	88465383	+	974.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4101.0	NM_001163489	20351.0	Mm.439752	NM_013658	ENSMUSG00000028064	Sema4a	AI132332|SemB|Semab	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-163760766-3	chr2	163760620	163760820	+	875.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10481.0	NM_001272052	11486.0	Mm.388	NM_007398	ENSMUSG00000017697	Ada	-	adenosine deaminase	protein-coding	2.75156442884393	1.26365088127619	1.22442523106126	2.16262983013674	2.55748492973086	2.3354550413642	1.51621324767744	3.36740292467851	1.20561552546958	0.24291883896073	0.740357382688614
Merged-chr4-53150709-4	chr4	53150645	53150845	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 1 of 49)	intron (NM_013454, intron 1 of 49)	9150.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-93989443-4	chr13	93989324	93989524	+	883.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68372.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135948389-4	chr4	135948264	135948464	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001357529, exon 1 of 9)	5' UTR (NM_001357529, exon 1 of 9)	958.0	NM_001357530	15356.0	Mm.482102	NM_008254	ENSMUSG00000028672	Hmgcl	AW476067|HL	3-hydroxy-3-methylglutaryl-Coenzyme A lyase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-59261755-4	chr10	59261623	59261823	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER5|LTR|ERV1	39801.0	NM_172939	268301.0	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3261301-2	chr19	3261201	3261401	+	715.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009212, exon 15 of 15)	3' UTR (NM_009212, exon 15 of 15)	21709.0	NM_009212	20589.0	Mm.3179	NM_009212	ENSMUSG00000024831	Ighmbp2	AEP|Catf1|RIPE3b1|Smbp-2|Smbp2|Smubp2|nmd|sma	immunoglobulin mu binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80230589-6	chr7	80230517	80230717	+	905.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291275, intron 2 of 6)	intron (NM_001291275, intron 2 of 6)	2188.0	NM_001291276	23991.0	Mm.30217	NM_011870	ENSMUSG00000030538	Cib1	Cibkip|Kip|Prkdcip	calcium and integrin binding 1 (calmyrin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-126232407-2	chr4	126232307	126232507	+	569.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_144941, exon 17 of 17)	3' UTR (NM_144941, exon 17 of 17)	23912.0	NM_144941	245877.0	Mm.266716	NM_144941	ENSMUSG00000028849	Map7d1	AV028413|BC019977|Mtap7d1|Parcc1|Rprc1|mKIAA1187	MAP7 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-112586061-2	chr12	112585961	112586161	+	758.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2723.0	NM_198411	70435.0	Mm.250193	NM_198411	ENSMUSG00000037679	Inf2	2610204M08Rik|AA589465|AW125550|EG629699	inverted formin, FH2 and WH2 domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-83330607-2	chr10	83330507	83330707	+	929.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177388, intron 1 of 10)	(TG)n|Simple_repeat|Simple_repeat	7210.0	NM_177388	338365.0	Mm.67073	NM_177388	ENSMUSG00000034591	Slc41a2	A230035L05Rik|SLC41A1-L1	solute carrier family 41, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-116173899-4	chr9	116173801	116174001	+	822.267822	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009371, intron 1 of 7)	intron (NM_009371, intron 1 of 7)	1462.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122145045-2	chr5	122144945	122145145	+	753.799988	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28|LTR|ERVL	-6983.0	NM_183307	330188.0	Mm.386907	NM_183307	ENSMUSG00000043036	Ccdc63	4921511C16Rik	coiled-coil domain containing 63	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-32538330-2	chr6	32538230	32538430	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175750, intron 1 of 31)	intron (NM_175750, intron 1 of 31)	27189.0	NR_040277	319849.0	Mm.440860	NR_040277	ENSMUSG00000086763	Plxna4os1	B230378P21Rik	plexin A4, opposite strand 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-57523401-2	chr9	57523301	57523501	+	722.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_007747, intron 1 of 4)	intron (NM_007747, intron 1 of 4)	2169.0	NM_007747	12858.0	Mm.273403	NM_007747	ENSMUSG00000000088	Cox5a	AA959768|CcOX	cytochrome c oxidase subunit Va	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-38962906-3	chr18	38962805	38963005	+	718.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033789, intron 4 of 4)	intron (NM_001033789, intron 4 of 4)	-30240.0	NM_001361073	71302.0	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-143942814-3	chr2	143942721	143942921	+	762.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_019771, exon 4 of 4)	3' UTR (NM_019771, exon 4 of 4)	27490.0	NM_019771	56431.0	Mm.28919	NM_019771	ENSMUSG00000015932	Dstn	2610043P17Rik|ADF|AU042046|Dsn|corn1|sid23p	destrin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-26978086-4	chr8	26977987	26978187	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001101502, intron 1 of 1)	CpG	751.0	NM_001110508	353310.0	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-105495911-2	chr9	105495805	105496005	+	705.875	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175025)	promoter-TSS (NM_175025)	-772.0	NM_001253836	235574.0	Mm.326247	NM_175025	ENSMUSG00000032570	Atp2c1	1700121J11Rik|ATP2C1A|AW061228|BCPM|D930003G21Rik|HHD|SPCA|pmr1	ATPase, Ca++-sequestering	protein-coding	3.00187264345172	3.45935544900694	3.51122474988662	3.41610160447369	3.272491621701	3.65355115426611	3.45741907488306	3.17960182395053	0.0666772279617343	0.903447499120996	0.998431161219273
Merged-chr19-29436913-2	chr19	29436813	29437013	+	816.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021396, intron 2 of 5)	intron (NM_021396, intron 2 of 5)	25994.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-17910315-4	chr17	17910187	17910387	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	22463.0	NM_008039	14289.0	Mm.378918	NM_008039	ENSMUSG00000052270	Fpr2	E330010I07Rik|Fpr-rs2	formyl peptide receptor 2	protein-coding	5.32044968590373	5.72325146403621	5.27935673660139	5.43427958863075	4.88956272206955	4.72012759301447	5.10902127241605	5.00502807722777	-0.591956006935523	0.0453110773745832	0.306522992005731
Merged-chr17-44457001-2	chr17	44456901	44457101	+	794.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	268429.0	NM_172621	224796.0	Mm.37666	NM_172621	ENSMUSG00000023959	Clic5	5730531E12Rik|B330005L24|Gm322|jbg|nmf318	chloride intracellular channel 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-20827024-2	chr14	20826924	20827124	+	777.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-9638.0	NM_008873	18792.0	Mm.4183	NM_008873	ENSMUSG00000021822	Plau	u-PA|uPA	plasminogen activator, urokinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-70828149-2	chr17	70828049	70828249	+	635.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	18628.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-50884407-2	chr17	50884307	50884507	+	547.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028162, intron 13 of 21)	RMER19C|LTR|ERVK	185726.0	NM_001297747	12228.0	Mm.392910	NM_009770	ENSMUSG00000022863	Btg3	ANA|tob5	B cell translocation gene 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-40585090-4	chr12	40584964	40585164	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	139011.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-109528519-2	chr7	109528419	109528619	+	632.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001326, intron 14 of 19)	intron (NM_001001326, intron 14 of 19)	8387.0	NR_028079	100302499.0	Mm.482651	NR_028079	ENSMUSG00000065016	Snora3	MBI-28	small nucleolar RNA, H/ACA box 3	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-127113994-3	chr2	127113915	127114115	+	913.283325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144818, intron 12 of 17)	intron (NM_144818, intron 12 of 17)	19939.0	NM_144818	215387.0	Mm.29786	NM_144818	ENSMUSG00000034906	Ncaph	A730011O11Rik|Brrn1|CAP-H|HCAP-H|mCAP-H	non-SMC condensin I complex, subunit H	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-99119957-3	chr9	99119854	99120054	+	777.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029094, intron 2 of 23)	intron (NM_029094, intron 2 of 23)	20257.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-30912226-4	chr12	30912135	30912335	+	913.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021330)	promoter-TSS (NM_021330)	566.0	NM_013709	24057.0	Mm.218624	NM_013709	ENSMUSG00000020669	Sh3yl1	AI314953|Ray|YSC84	Sh3 domain YSC-like 1	protein-coding	0.630855642533835	1.19528839065368	0.652978548484785	1.10955401989528	1.344983997503	1.20594099855341	1.28118411455433	0.646170268927385	1.03559390796391	0.503428639976117	0.939787919021146
Merged-chr4-128668117-3	chr4	128668020	128668220	+	873.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195130, intron 1 of 14)	intron (NM_001195130, intron 1 of 14)	13418.0	NM_001195130	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-155943167-2	chr4	155943078	155943278	+	772.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039157)	promoter-TSS (NM_001039157)	-635.0	NM_001039158	140499.0	Mm.371673	NM_021402	ENSMUSG00000023286	Ube2j2	1200007B18Rik|2400008G19Rik|5730472G04Rik|AL022923|NCUBE-2|Ubc6|Ubc6p	ubiquitin-conjugating enzyme E2J 2	protein-coding	2.08575046458811	1.51995799790451	0.972188795892958	1.72494123575381	0.90696995688937	0.762759625137196	0.979659156577442	0.731738013758402	-3.57699036049288	0.0159948137313951	0.151824189200379
Merged-chr11-76477784-1	chr11	76477684	76477884	+	633.0	f1_balb.idr	intron (NM_001346670, intron 3 of 21)	intron (NM_001346670, intron 3 of 21)	-9319.0	NM_001291186	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	0.588620545944653	1.43153438991603	0.624773112753678	0.83779007036482	1.11518346458621	0.645265345194453	2.18924599597639	1.18875218325861	1.82996701378502	0.215509042603066	0.706180188649098
Merged-chr10-89776317-1	chr10	89776217	89776417	+	712.0	f0_c57.idr	intron (NM_029166, intron 4 of 20)	intron (NM_029166, intron 4 of 20)	31326.0	NM_029166	75089.0	Mm.268922	NM_029166	ENSMUSG00000019951	Uhrf1bp1l	2010319N22Rik|4930506D01Rik|AA589495|C80672|E030041M21Rik|mKIAA0701	UHRF1 (ICBP90) binding protein 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-51938897-4	chr11	51938810	51939010	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F|LTR|ERVL-MaLR	-28721.0	NM_029976	52626.0	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117714112-2	chr10	117714012	117714212	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3354.0	NM_001288586	17246.0	Mm.22670	NM_010786	ENSMUSG00000020184	Mdm2	1700007J15Rik|AA415488|Mdm-2	transformed mouse 3T3 cell double minute 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-37994208-4	chr13	37994137	37994337	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025965)	promoter-TSS (NM_025965)	-29.0	NM_001360842	107513.0	Mm.426670	NM_025965	ENSMUSG00000021427	Ssr1	2510001K09Rik|6330400D04|AI159733|AI452176|SSR|TRAPA	signal sequence receptor, alpha	protein-coding	5.73336771241257	6.63348415310054	6.23709010121433	6.56214584522976	4.88418310639085	4.69292208420702	5.22077836444113	4.20954871865752	-1.72478368462199	1.33071499656882e-08	1.50621872913515e-06
Merged-chr12-4488565-4	chr12	4488455	4488655	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11373.0	NM_010881	17977.0	Mm.301039	NM_010881	ENSMUSG00000020647	Ncoa1	KAT13A|NCoA-1|NRC-1|SRC-1|SRC-a|SRC1|bHLHe74|mNRC-1	nuclear receptor coactivator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117861179-2	chr11	117861079	117861279	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085535, intron 1 of 3)	intron (NM_001085535, intron 1 of 3)	427.0	NM_001085535	546519.0	Mm.385578	NM_001085535	ENSMUSG00000070330	Tmem235	Cldn27|Gm12581	transmembrane protein 235	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-132772146-2	chr7	132772046	132772246	+	630.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_212473, intron 2 of 4)	intron (NM_212473, intron 2 of 4)	4770.0	NM_001347630	77938.0	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-40831990-2	chr19	40831890	40832090	+	833.5	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_172839, exon 2 of 6)	5' UTR (NM_172839, exon 2 of 6)	711.0	NM_172839	240665.0	Mm.309	NM_172839	ENSMUSG00000025010	Ccnj	D430039C20Rik	cyclin J	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-51338413-6	chr3	51338318	51338518	+	938.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023502, intron 1 of 9)	L1MB8|LINE|L1	2226.0	NM_001356358	69257.0	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-109423288-2	chr13	109423188	109423388	+	949.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011056, intron 3 of 16)	MLT1I|LTR|ERVL-MaLR	98544.0	NR_030644	100124489.0		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-82857060-4	chr18	82856965	82857165	+	981.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_125720, intron 2 of 2)	MIRc|SINE|MIR	1168.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21219137-2	chr9	21219037	21219237	+	827.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR11B|LTR|ERVK	20195.0	NM_016679	50868.0	Mm.248266	NM_016679	ENSMUSG00000003308	Keap1	INRF2|mKIAA0132	kelch-like ECH-associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-132597414-4	chr2	132597313	132597513	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033469)	promoter-TSS (NR_033469)	-783.0	NR_033468	767814.0	Mm.371752	NR_033468	ENSMUSG00000074783	AU019990	-	expressed sequence AU019990	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-74905072-4	chr9	74904948	74905148	+	938.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43127.0	NM_008262	15379.0	Mm.303355	NM_008262	ENSMUSG00000043013	Onecut1	D9Ertd423e|HNF-6|Hfh12|Hnf6|Hnf6b|OC-1|Oc1	one cut domain, family member 1	protein-coding	-0.464423462919748	-0.903027080447282	-0.741008041355291	-0.91287682519902	-0.915701692963065	-0.900481341286522	-0.736846761486662	-0.912526508101001	-1.80083077667672	0.535000148584322	1
Merged-chr15-21763269-1	chr15	21763169	21763369	+	541.0	f1_c57bl6.idr	Intergenic	RLTR9E|LTR|ERVK	651817.0	NM_001008420	215654.0	Mm.300909	NM_001008420	ENSMUSG00000040452	Cdh12	Cdhb	cadherin 12	protein-coding	-1.56355737717652	-1.81244775989375	-1.82128546162293	-1.82854501295842	-1.83962066705452	-1.81053259306168	-1.81928479966835	-1.82724555674025	-1.28500227969968	0.715751224811686	1
Merged-chr4-129346713-4	chr4	129346576	129346776	+	828.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025970, intron 6 of 6)	intron (NM_025970, intron 6 of 6)	10650.0	NM_025970	67106.0	Mm.36575	NM_025970	ENSMUSG00000057572	Zbtb8os	2010001H09Rik|2310028N13Rik|AI851226|Arch|Archm	zinc finger and BTB domain containing 8 opposite strand	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-66450921-2	chr8	66450821	66451021	+	681.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175188, intron 6 of 7)	intron (NM_175188, intron 6 of 7)	35609.0	NM_025465	66282.0	Mm.294985	NM_025465	ENSMUSG00000025591	Tma16	1810029B16Rik	translation machinery associated 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-60677514-2	chr13	60677414	60677614	+	665.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	75303.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-122895230-4	chr10	122895121	122895321	+	748.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110218, intron 6 of 9)	intron (NM_001110218, intron 6 of 9)	90503.0	NR_029527	387251.0		NR_029527	ENSMUSG00000065406	Mirlet7i	Mirnlet7i|let-7i|mmu-let-7i	microRNA let7i	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-102982978-4	chr2	102982881	102983081	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-81316.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-30975554-4	chr3	30975458	30975658	+	924.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6143.0	NM_001165956	241915.0	Mm.233173	NM_153421	ENSMUSG00000037652	Phc3	E030046K01Rik|Edr3|Hph3	polyhomeotic 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31184580-2	chr14	31184480	31184680	+	590.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347583, intron 13 of 13)	intron (NM_001347583, intron 13 of 13)	-15939.0	NM_138672	192187.0	Mm.220821	NM_138672	ENSMUSG00000042286	Stab1	FEEL-1|FELE-1|MFEEL-1|MS-1|STAB-1|mKIAA0246	stabilin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-66535272-4	chr6	66535174	66535374	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019499)	promoter-TSS (NM_019499)	53.0	NM_001355624	56150.0	Mm.489653	NM_019499	ENSMUSG00000029910	Mad2l1	AA673185|MAD2	MAD2 mitotic arrest deficient-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-98880433-2	chr13	98880333	98880533	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178716, intron 4 of 23)	intron (NM_178716, intron 4 of 23)	10609.0	NM_001048267	238799.0	Mm.173286	NM_178716	ENSMUSG00000009470	Tnpo1	AU021749|D13Ertd688e|IPO2|Kpnb2|MIP|MIP1|TRN	transportin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-131223447-2	chr2	131223347	131223547	+	858.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10616.0	NM_001206383	228607.0	Mm.287226	NM_144888	ENSMUSG00000037523	Mavs	D430028G21Rik|IPS-1|Visa|cardif	mitochondrial antiviral signaling protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-20542993-4	chr11	20542897	20543097	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021372)	promoter-TSS (NM_021372)	-256.0	NM_021372	58172.0	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-12235291-2	chr18	12235145	12235345	+	560.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008720, intron 1 of 24)	intron (NM_008720, intron 1 of 24)	1141.0	NM_008720	18145.0	Mm.3484	NM_008720	ENSMUSG00000024413	Npc1	A430089E03Rik|C85354|D18Ertd139e|D18Ertd723e|lcsd|nmf164|spm	NPC intracellular cholesterol transporter 1	protein-coding	-0.377897335231114	-0.36558210504544	0.0778509633648391	-0.372738688960189	-0.233544191136469	-0.364669692015694	-0.368733953874086	0.253566633761772	0.867573734230198	0.730835158301083	1
Merged-chr4-155573577-2	chr4	155573477	155573677	+	735.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355599, intron 1 of 10)	PB1D10|SINE|Alu	9762.0	NM_001355599	192185.0	Mm.28347	NM_138671	ENSMUSG00000029063	Nadk	4432404C02Rik|BC004012	NAD kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-27960635-3	chr15	27960555	27960755	+	963.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081302, intron 1 of 56)	ORR1D2|LTR|ERVL-MaLR	65193.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-27939058-4	chr3	27938967	27939167	+	922.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164056, intron 1 of 26)	CpG	387.0	NM_001164056	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64211497-4	chr5	64211386	64211586	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019636, intron 2 of 19)	RCHARR1|DNA|hAT-Charlie	-18871.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-147911312-4	chr5	147911204	147911404	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16489.0	NM_027872	71706.0	Mm.153218	NM_027872	ENSMUSG00000029650	Slc46a3	1200006F02Rik	solute carrier family 46, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-78465734-4	chr10	78465634	78465834	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172134)	promoter-TSS (NM_172134)	-786.0	NM_172134	216134.0	Mm.206159	NM_172134	ENSMUSG00000032788	Pdxk	2310036D04Rik|AA119688|C77999	pyridoxal (pyridoxine, vitamin B6) kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-38500093-3	chr5	38500000	38500200	+	768.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145559, intron 1 of 10)	RMER19C|LTR|ERVK	2052.0	NM_145559	117591.0	Mm.260137	NM_145559	ENSMUSG00000005107	Slc2a9	Glut9|SLC2A9B|SLC2a9A	solute carrier family 2 (facilitated glucose transporter), member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-85071960-4	chr16	85071852	85072052	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198825, intron 5 of 15)	intron (NM_001198825, intron 5 of 15)	99741.0	NR_045889	100038614.0	Mm.441351	NR_045889	ENSMUSG00000115518	Gm10791	-	predicted gene 10791	ncRNA	6.36783762541894	6.4352189208289	6.79726007922859	6.55846378381114	6.03144954937716	6.34319685798558	5.99119530107835	6.39171700139658	-0.377786613998779	0.0738745349449623	0.410891375174802
Merged-chr1-91092144-1	chr1	91092044	91092244	+	758.333313	f0_balb.idr	intron (NM_008515, intron 9 of 22)	intron (NM_008515, intron 9 of 22)	38700.0	NM_001310732	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10182907-4	chr19	10182841	10183041	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146094)	promoter-TSS (NM_146094)	53.0	NM_146094	76267.0	Mm.30158	NM_146094	ENSMUSG00000010663	Fads1	0710001O03Rik|A930006B21Rik|AI317215|DSD	fatty acid desaturase 1	protein-coding	3.90979462225956	4.60323980982395	3.52400735107022	4.23481247560447	4.93518032922436	4.91492703095405	4.85050956738405	4.4125326282946	0.859965084279099	0.0318398685831408	0.247098799004219
Merged-chr5-134492016-3	chr5	134491871	134492071	+	839.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039162, intron 14 of 15)	intron (NM_001039162, intron 14 of 15)	-35255.0	NM_001081464	57080.0	Mm.332735	NM_020331	ENSMUSG00000023079	Gtf2ird1	1700012P16Rik|BEN|Cream1|ESTM9|GTF3|Gtf2il|MusTRD1|Tg(Alb1-Myc)166.8Sst|WBSCR11|X83320	general transcription factor II I repeat domain-containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-9930460-4	chr19	9930369	9930569	+	791.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-30936.0	NM_016692	16319.0	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16102033-2	chr7	16101868	16102068	+	586.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025898, intron 1 of 10)	intron (NM_025898, intron 1 of 10)	3388.0	NM_025898	108124.0	Mm.104540	NM_025898	ENSMUSG00000006024	Napa	1500039N14Rik|AW209189|RA81|SNAP-alpha|SNAPA|SNARE|a-SNAP|hyh	N-ethylmaleimide sensitive fusion protein attachment protein alpha	protein-coding	0.0183970361033326	-0.229204854685434	0.424099403451943	0.180282675426084	-0.241852418531739	-0.228206021690641	-0.232655642065303	-0.236445821368814	-3.70533875645549	0.114971101368322	1
Merged-chr12-84181479-2	chr12	84181379	84181579	+	807.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163501, intron 1 of 12)	intron (NM_001163501, intron 1 of 12)	12536.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-46555896-4	chr4	46555831	46556031	+	999.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164804, intron 2 of 11)	intron (NM_001164804, intron 2 of 11)	10509.0	NM_178893	107684.0	Mm.416311	NM_178893	ENSMUSG00000028337	Coro2a	9030208C03Rik|AI563590|IR10	coronin, actin binding protein 2A	protein-coding	3.30400052960085	3.69667458402691	3.7245183631547	3.39909765396281	3.33117941807816	3.72278730213893	3.75219260089265	3.41631894000333	0.0379419772020696	0.941361537882963	0.998431161219273
Merged-chr10-96171767-3	chr10	96171674	96171874	+	825.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11B|LTR|ERVK	-54433.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-17773899-4	chr12	17773821	17774021	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361645, intron 2 of 4)	intron (NM_001361645, intron 2 of 4)	83112.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-32711816-2	chr18	32711716	32711916	+	676.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045381, intron 4 of 4)	intron (NR_045381, intron 4 of 4)	-103567.0	NM_021367	53603.0	Mm.143716	NM_021367	ENSMUSG00000024379	Tslp	-	thymic stromal lymphopoietin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-55459115-3	chr12	55459033	55459233	+	810.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33514.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-111148677-2	chr8	111148577	111148777	+	730.125	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3179.0	NR_040364	434350.0	Mm.442061	NR_040363		9430091E24Rik	-	RIKEN cDNA 9430091E24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-134385258-2	chr5	134385158	134385358	+	670.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081462, intron 15 of 29)	intron (NM_001081462, intron 15 of 29)	58804.0	NR_039544	100628570.0		NR_039544	ENSMUSG00000093311	Mir3965	mmu-mir-3965|mu-mir-3965	microRNA 3965	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-13304050-4	chr10	13303962	13304162	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195065, intron 1 of 12)	intron (NM_001195065, intron 1 of 12)	20227.0	NM_001195096	215789.0	Mm.283359	NM_001033257	ENSMUSG00000062866	Phactr2	AV158170|BC012871	phosphatase and actin regulator 2	protein-coding	4.79564357512717	4.74644476800783	5.23781247730616	4.95545741824585	4.8922839979158	4.24386869622681	4.93417384779536	3.10638997695555	-0.585002034290223	0.169264964667926	0.636165929777423
Merged-chr19-10698136-3	chr19	10697997	10698197	+	916.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361958, intron 1 of 4)	intron (NM_001361958, intron 1 of 4)	-2671.0	NM_001361964	107305.0	Mm.19091	NM_181403	ENSMUSG00000048832	Vps37c	5730409F24Rik|AU042646	vacuolar protein sorting 37C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-40766214-2	chr9	40766187	40766387	+	793.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_133733, intron 2 of 6)	RSINE1|SINE|B4	-34986.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	1.86500096951902	2.55210501987854	2.02083221103418	1.66131572568372	2.19962149184478	2.10697870518138	2.57179311744749	1.24353884024254	0.130063134205787	0.89517242274781	0.998431161219273
Merged-chr5-142468737-2	chr5	142468637	142468837	+	611.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172725, intron 5 of 16)	intron (NM_172725, intron 5 of 16)	4806.0	NM_172725	231855.0	Mm.78250	NM_172725	ENSMUSG00000039623	Ap5z1	C330006K01Rik	adaptor-related protein complex 5, zeta 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-21824086-1	chr14	21823986	21824186	+	575.0	f1_balb.idr	Intergenic	RMER20B|LTR|ERVK	-7475.0	NM_011695	22334.0	Mm.262327	NM_011695	ENSMUSG00000021771	Vdac2	Vdac6|mVDAC2|mVDAC6	voltage-dependent anion channel 2	protein-coding	-0.451875195218885	-0.436926542863429	-0.441796497855984	-0.445571894145354	-0.0328241855045936	0.455930922381448	-0.440720139782014	-0.444911187935441	3.74793250826076	0.146326302133943	1
Merged-chr1-169969316-4	chr1	169969218	169969418	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040438)	promoter-TSS (NR_040438)	-91.0	NR_040438	67303.0	Mm.396611	NR_040438	ENSMUSG00000097503	3110045C21Rik	AI838577	RIKEN cDNA 3110045C21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-156009175-3	chr1	156009065	156009265	+	784.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144791, intron 6 of 6)	intron (NM_144791, intron 6 of 6)	25652.0	NM_001160019	208263.0	Mm.211654	NM_144791	ENSMUSG00000026466	Tor1aip1	LAP1|Lap1B	torsin A interacting protein 1	protein-coding	2.59399938786821	2.9974075131833	2.70766007721395	2.9028848179437	2.61506401991623	2.43728099122889	1.81031764949643	2.74417939510111	-0.720855386188027	0.336195772353002	0.836606195473009
Merged-chr19-4257740-4	chr19	4257650	4257850	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6128.0	NR_105951	102465595.0		NR_105951	ENSMUSG00000099290	Mir6985	Gm27719|mmu-mir-6985	microRNA 6985	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-119406755-3	chr13	119406635	119406835	+	750.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001308506, intron 1 of 16)	intron (NM_001308506, intron 1 of 16)	2276.0	NM_008710	18115.0	Mm.132584	NM_008710	ENSMUSG00000116207	Nnt	4930423F13Rik|AI323702|BB168308	nicotinamide nucleotide transhydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-75847916-2	chr14	75847816	75848016	+	739.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028481)	promoter-TSS (NR_028481)	-7.0	NR_028481	100303751.0	Mm.484707	NR_028481	ENSMUSG00000065147	Snora31	MBI-161	small nucleolar RNA, H/ACA box 31	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-65567894-2	chr5	65567794	65567994	+	746.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310619, intron 2 of 5)	intron (NM_001310619, intron 2 of 5)	30649.0	NM_001310619	53323.0	Mm.319512	NM_016786	ENSMUSG00000029203	Ube2k	AW492011|D5Ertd601e|E2-25k|HIP-2|Hip2|Hypg|Lig	ubiquitin-conjugating enzyme E2K	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-128744857-4	chr7	128744759	128744959	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001029982)	promoter-TSS (NM_001029982)	-11.0	NM_001029982	207352.0	Mm.297105	NM_001029982	ENSMUSG00000055319	Sec23ip	D7Ertd373e|p125	Sec23 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-25909975-2	chr15	25909875	25910075	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001034851, intron 3 of 8)	intron (NM_001034851, intron 3 of 8)	-23577.0	NM_001277318	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71951659-1	chr8	71951559	71951759	+	545.0	f1_c57bl6.idr	intron (NM_001164581, intron 1 of 3)	RSINE1|SINE|B4	593.0	NM_001164581	234413.0	Mm.334607	NM_001164581	ENSMUSG00000052446	Zfp961	A230105L22Rik|BC065788|mszf37|mszf55-2	zinc finger protein 961	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-148399357-4	chr5	148399255	148399455	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007513, intron 1 of 12)	CpG	549.0	NM_007513	11987.0	Mm.275489	NM_007513	ENSMUSG00000041313	Slc7a1	4831426K01Rik|AI447493|Atrc-1|Atrc1|Cat1|Rec-1|Rev-1|mCAT-1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-44024945-3	chr10	44024845	44025045	+	863.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20099.0	NM_172393	11630.0	Mm.292082	NM_172393	ENSMUSG00000019866	Crybg1	AI462491|AI463325|Aim1	crystallin beta-gamma domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-39427040-4	chr10	39427045	39427245	+	802.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122892, intron 2 of 12)	intron (NM_001122892, intron 2 of 12)	57346.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-8972246-2	chr3	8972146	8972346	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009412, intron 1 of 5)	B1_Mur2|SINE|Alu	-8100.0	NM_001025261	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-154910803-4	chr4	154910699	154910899	+	860.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER12|LTR|ERVK	-11756.0	NM_025582	66469.0	Mm.41868	NM_025582	ENSMUSG00000029059	Fam213b	2810405K02Rik|AI836168|PM/PGFS	family with sequence similarity 213, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126824835-4	chr8	126824734	126824934	+	990.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24186.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88177678-4	chr3	88177581	88177781	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045997, exon 1 of 3)	non-coding (NR_045997, exon 1 of 3)	104.0	NR_045997	76642.0	Mm.424420	NR_045997	ENSMUSG00000096935	1700113A16Rik	2210408E11Rik|AA408983	RIKEN cDNA 1700113A16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-57826570-1	chr18	57826470	57826670	+	1000.0	f0_balb.idr	Intergenic	Intergenic	-34237.0	NR_152225	100503033.0	Mm.381112	NR_152224		Gm19519	-	predicted gene, 19519	ncRNA	-0.836670816541814	-0.826364382579917	-0.830554798642742	-0.832857801349036	-0.691133728058927	-0.823610442329735	-0.255039705719804	-0.666899685675313	3.07582319750565	0.265263836848455	1
Merged-chr3-85887542-3	chr3	85887409	85887609	+	897.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177130)	promoter-TSS (NM_177130)	9.0	NM_177130	320302.0	Mm.482978	NM_177130	ENSMUSG00000031286	Glt28d2	4732486J07Rik|Glt28d1l	glycosyltransferase 28 domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-12699581-2	chr15	12699481	12699681	+	687.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-107025.0	NM_001081064	68070.0	Mm.423205	NM_001081064	ENSMUSG00000022197	Pdzd2	4930537L06Rik|A930022H17Rik|Gm21706|Gm82|Pdzk3|mKIAA0300	PDZ domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120219136-4	chr11	120219034	120219234	+	896.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12483.0	NR_151480	102640779.0	Mm.394084	NM_175248		2900052L18Rik	-	RIKEN cDNA 2900052L18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99128757-2	chr7	99128657	99128857	+	890.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 1 of 14)	intron (NM_178635, intron 1 of 14)	12387.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96636737-4	chr3	96636637	96636837	+	850.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001162387, exon 2 of 5)	exon (NM_001162387, exon 2 of 5)	890.0	NM_001162388	18632.0	Mm.20901	NM_011069	ENSMUSG00000028102	Pex11b	PEX11beta|Pex11pbeta	peroxisomal biogenesis factor 11 beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123903990-2	chr5	123903890	123904090	+	805.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-3285.0	NM_026603	68184.0	Mm.28549	NM_026603	ENSMUSG00000023106	Denr	1500003K04Rik	density-regulated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150656125-4	chr4	150656045	150656245	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3971.0	NM_173774	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-87464412-3	chr14	87464296	87464496	+	729.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253755, intron 3 of 11)	intron (NM_001253755, intron 3 of 11)	47813.0	NM_001253755	219249.0	Mm.35168	NM_172605	ENSMUSG00000022019	Tdrd3	4732418C03Rik|6720468N18	tudor domain containing 3	protein-coding	0.986211025753088	1.59761330174135	2.01756835961672	1.49308143622966	2.07393035062885	3.00504999500018	2.15906577571944	1.03363595288269	1.69684851542034	0.130989887209619	0.566336454410263
Merged-chr13-37434234-4	chr13	37434130	37434330	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	88885.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-37454717-3	chr9	37454601	37454801	+	697.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21526.0	NM_001164767	19649.0	Mm.212826	NM_011248	ENSMUSG00000032128	Robo3	Rbig1|Rig-1|Rig1|Robo3a|Robo3b	roundabout guidance receptor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-34765921-4	chr4	34765822	34766022	+	941.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	-9663.0	NM_001033255	214568.0	Mm.297405	NM_001033255	ENSMUSG00000071015	Gm136	-	predicted gene 136	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-78080364-4	chr11	78080269	78080469	+	981.2708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022313)	promoter-TSS (NM_022313)	14.0	NM_022313	57837.0	Mm.21096	NM_022313	ENSMUSG00000020832	Eral1	2610524P08Rik|9130407C09Rik|AU019798|Era|M-ERA|MERA-S|MERA-W	Era (G-protein)-like 1 (E. coli)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-121390080-2	chr9	121389980	121390180	+	598.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357970, intron 1 of 15)	intron (NM_001357970, intron 1 of 15)	7286.0	NM_001357969	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-107159628-2	chr3	107159540	107159740	+	671.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-23503.0	NM_001081140	242151.0	Mm.245155	NM_001081140	ENSMUSG00000042861	Kcna10	Gm1962|Kcna8|Kv1.8	potassium voltage-gated channel, shaker-related subfamily, member 10	protein-coding	0.710086010418922	1.32847163565744	0.95186495441929	1.82002980890334	0.712862869751582	1.3399507559963	0.958648467184048	1.47944368266552	-0.467564252801478	0.74236308150474	0.998431161219273
Merged-chr2-71155661-2	chr2	71155561	71155761	+	724.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37607.0	NM_028593	73649.0	Mm.45435	NM_028593	ENSMUSG00000027015	Cybrd1	2210407P13Rik|Dcytb	cytochrome b reductase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69673110-2	chr11	69673010	69673210	+	770.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144958)	promoter-TSS (NM_144958)	-687.0	NM_001159375	13681.0	Mm.26680	NM_144958	ENSMUSG00000059796	Eif4a1	BM-010|Ddx2a|Eif4	eukaryotic translation initiation factor 4A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-120854083-2	chr4	120853983	120854183	+	623.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_182929)	promoter-TSS (NM_182929)	-716.0	NM_182929	242662.0	Mm.192502	NM_182929	ENSMUSG00000032890	Rims3	A730060M23Rik|Nim3|Rim3|mKIAA0237	regulating synaptic membrane exocytosis 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-61370997-3	chr10	61370885	61371085	+	913.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013753, intron 1 of 19)	intron (NM_013753, intron 1 of 19)	12538.0	NM_013753	27355.0	Mm.269699	NM_013753	ENSMUSG00000020092	Pald1	MMPAL|Pald|mKIAA1274	phosphatase domain containing, paladin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-71289620-3	chr11	71289488	71289688	+	808.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	-4356.0	NR_027858	627984.0	Mm.390378	NM_001039234	ENSMUSG00000092528	Nlrp1c-ps	Nalp1c|Nlrp1c	NLR family, pyrin domain containing 1C, pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-78658416-1	chr1	78658316	78658516	+	1000.0	f1_balb.idr	promoter-TSS (NM_001136226)	promoter-TSS (NM_001136226)	-24.0	NM_001136226	195434.0	Mm.276016	NM_001001981	ENSMUSG00000079470	Utp14b	4932411L21Rik|jsd	UTP14B small subunit processome component	protein-coding	2.26778959173289	3.27809117551042	1.84929902850695	2.13518033563292	3.35507134459236	2.30006391327812	1.36916308559832	2.28660028105625	0.059349704194045	0.948984518255775	0.998431161219273
Merged-chr16-54396212-2	chr16	54396112	54396312	+	680.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	887025.0	NM_178720	239852.0	Mm.245045	NM_178720	ENSMUSG00000064310	Zpld1	9430016A21Rik	zona pellucida like domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-90983225-3	chr10	90983123	90983323	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	99520.0	NM_001042558	11783.0	Mm.220289	NM_009684	ENSMUSG00000019979	Apaf1	6230400I06Rik|Apaf-1|Apaf1l|fog|mKIAA0413	apoptotic peptidase activating factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-127845556-2	chr2	127845456	127845656	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9072.0	NM_028765	74121.0	Mm.244835	NM_028765	ENSMUSG00000027380	Acoxl	1200014P05Rik|AV025673	acyl-Coenzyme A oxidase-like	protein-coding	2.42664702823945	0.781194894756021	0.757694276428355	1.3686881136451	2.3985204945359	0.786357896525618	0.762964423310472	1.37753736091953	-0.0315970292848447	0.989503197903018	0.998431161219273
Merged-chr4-128610190-4	chr4	128610092	128610292	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177758)	promoter-TSS (NM_177758)	-94.0	NM_177758	269585.0	Mm.153291	NM_177758	ENSMUSG00000061894	Zscan20	C130001F22|Zfp31|Zkscan20	zinc finger and SCAN domains 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85604534-4	chr12	85604428	85604628	+	970.2291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205053, intron 1 of 3)	intron (NM_001205053, intron 1 of 3)	4510.0	NM_001205053	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44829571-2	chr7	44829565	44829765	+	769.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_053074, exon 2 of 2)	exon (NM_053074, exon 2 of 2)	-6623.0	NM_010215	14204.0	Mm.2565	NM_010215	ENSMUSG00000074141	Il4i1	Fig1|Fig1-ps|LAAO|LAO	interleukin 4 induced 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-108944248-3	chr7	108944173	108944373	+	595.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9858.0	NM_025344	66085.0	Mm.182962	NM_025344	ENSMUSG00000031029	Eif3f	0610037M02Rik|AA409853|Eif3s5	eukaryotic translation initiation factor 3, subunit F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-69869165-2	chr5	69869065	69869265	+	563.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur1|LINE|L1	-276861.0	NM_001038015	67980.0	Mm.33830	NM_027681	ENSMUSG00000029209	Gnpda2	4921523I18Rik|4933412A11Rik|BB189630|GNPDA|Gnp2|Sb52|mKIAA4008	glucosamine-6-phosphate deaminase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-38930925-4	chr19	38930826	38931026	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008234)	promoter-TSS (NM_008234)	-64.0	NM_008234	15201.0	Mm.57223	NM_008234	ENSMUSG00000025001	Hells	AI323785|E130115I21Rik|LSH|Lysh|PASG|YFK8	helicase, lymphoid specific	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-145344619-1	chr6	145344519	145344719	+	637.0	f1_c57bl6.idr	Intergenic	Intergenic	-43006.0	NR_003625	381827.0	Mm.179075	NM_001001987		1700073E17Rik	-	ribosomal protein L7 pseudogene	pseudo	0.712824501206063	1.84200120303664	0.756105830969774	1.70361098387554	0.716991599148311	1.60225875968522	2.15002906296828	0.743039506469285	0.292229728089855	0.845688283941609	0.998431161219273
Merged-chr8-27026566-2	chr8	27026466	27026666	+	701.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_153592, intron 2 of 11)	intron (NM_153592, intron 2 of 11)	2767.0	NM_153592	244373.0	Mm.277699	NM_153592	ENSMUSG00000031483	Erlin2	BC036333|C87251|Spfh2	ER lipid raft associated 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-60879601-4	chr11	60879446	60879646	+	973.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001168507)	promoter-TSS (NM_001168507)	-508.0	NM_001168507	216821.0	Mm.28063	NM_173453	ENSMUSG00000043284	Tmem11	5730466P16Rik|AA409091	transmembrane protein 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-109438147-4	chr4	109438056	109438256	+	896.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145948, intron 12 of 17)	intron (NM_001145948, intron 12 of 17)	22509.0	NM_001145948	230603.0	Mm.33091	NM_153392	ENSMUSG00000028555	Ttc39a	4922503N01Rik	tetratricopeptide repeat domain 39A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83473949-3	chr11	83473851	83474051	+	694.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027427, intron 1 of 15)	intron (NM_027427, intron 1 of 15)	843.0	NM_027427	70439.0	Mm.181050	NM_027427	ENSMUSG00000020680	Taf15	2610111C21Rik|68kDa|TAFII68|Taf2n	TATA-box binding protein associated factor 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-148165729-2	chr4	148165636	148165836	+	685.900024	f1_balb.idr|f1_c57bl6.idr	exon (NM_176848, exon 5 of 6)	exon (NM_176848, exon 5 of 6)	5068.0	NM_176848	230904.0	Mm.262287	NM_176848	ENSMUSG00000041556	Fbxo2	FBG1|FBX2|Fbs1|Fbs2|NFB42|Prpl4	F-box protein 2	protein-coding	-0.00890384133087307	-0.139881845286129	0.536555902038682	-0.149026444323612	0.509381910013362	-0.138719894960424	-0.143902431065486	-0.148329848894398	-0.267592122434846	0.908973531698733	1
Merged-chr13-5888354-4	chr13	5888244	5888444	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26855.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98294709-3	chr11	98294617	98294817	+	892.305542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	32111.0	NR_039579	100628613.0		NR_039579	ENSMUSG00000093176	Mir5119	mmu-mir-5119|mu-mir-5119	microRNA 5119	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-31952226-1	chr12	31952126	31952326	+	616.0	f1_balb.idr	Intergenic	Intergenic	-1981.0	NM_001361928	73389.0	Mm.390461	NM_153198	ENSMUSG00000002996	Hbp1	1700058O05Rik|BE629963|C330012F01Rik|C86454	high mobility group box transcription factor 1	protein-coding	0.84009508089389	0.700835814865066	1.94377550716842	1.4438225028149	1.14021168362537	0.70408585263812	0.689471502703296	1.45319394425901	-1.10646645819805	0.455370182595355	0.919253057979521
Merged-chr13-23760258-4	chr13	23760164	23760364	+	899.31665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_178192)	TTS (NM_178192)	985.0	NM_178192	326619.0	Mm.228709	NM_178192	ENSMUSG00000060093	Hist1h4a	-	histone cluster 1, H4a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81670268-2	chr15	81670168	81670368	+	585.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289711, intron 4 of 17)	intron (NM_001289711, intron 4 of 17)	6379.0	NR_110362	214669.0	Mm.280768	NM_145993	ENSMUSG00000022394	L3mbtl2	4732493N06Rik|M4mbt	L3MBTL2 polycomb repressive complex 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-32715347-4	chr3	32715228	32715428	+	942.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019673, intron 4 of 13)	intron (NM_019673, intron 4 of 13)	6782.0	NM_019673	56456.0	Mm.41077	NM_019673	ENSMUSG00000027671	Actl6a	2810432C06Rik|AI851094|ARP4|Actl6|Baf53a|C79802	actin-like 6A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134544299-4	chr6	134544205	134544405	+	839.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008514, intron 1 of 22)	intron (NM_008514, intron 1 of 22)	22608.0	NM_008514	16974.0	Mm.321990	NM_008514	ENSMUSG00000030201	Lrp6	C030016K15Rik|Cd|Gw|ska26|ska<m26Jus>|skax26	low density lipoprotein receptor-related protein 6	protein-coding	1.6899589908434	1.78038233761176	1.7198873847531	1.54858865091382	1.88185798665417	1.31035771622916	1.73339792335339	1.05107567031429	-0.461302887837592	0.684885928335117	0.996533206832645
Merged-chr3-75499148-4	chr3	75499076	75499276	+	944.283325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57676.0	NM_019745	56426.0	Mm.316473	NM_019745	ENSMUSG00000027835	Pdcd10	2410003B13Rik|Ccm3|Tfa15|Tfar15	programmed cell death 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-95552226-4	chr9	95552130	95552330	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7587.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-80180203-4	chr17	80180114	80180314	+	971.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176963, intron 4 of 6)	intron (NM_176963, intron 4 of 6)	27091.0	NM_001195486	225027.0	Mm.292016	NM_146083	ENSMUSG00000024097	Srsf7	35kDa|9430065L19Rik|9G8|NX-96|Sfrs7	serine/arginine-rich splicing factor 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114657938-2	chr11	114657838	114658038	+	739.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10605.0	NM_023372	67671.0	Mm.238817	NM_023372	ENSMUSG00000057322	Rpl38	0610025G13Rik|Rbt|Ts|Tss	ribosomal protein L38	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27010741-2	chr2	27010641	27010841	+	913.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001243240, intron 1 of 2)	intron (NM_001243240, intron 1 of 2)	815.0	NM_001243239	381356.0	Mm.150270	NM_029862	ENSMUSG00000015488	Cacfd1	5930434B04Rik|mFwe	calcium channel flower domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-118135048-4	chr4	118134940	118135140	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161774)	promoter-TSS (NM_001161774)	-94.0	NM_001161774	20441.0	Mm.251002	NM_009176	ENSMUSG00000028538	St3gal3	ST3GalIII|ST3N|Siat3|Siat6	ST3 beta-galactoside alpha-2,3-sialyltransferase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-117841174-4	chr6	117841071	117841271	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346652)	promoter-TSS (NM_001346652)	-10.0	NM_001346649	232337.0	Mm.290847	NM_177684	ENSMUSG00000059689	Zfp637	AI646709|BC021601|Znf32	zinc finger protein 637	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-94310179-4	chr3	94310100	94310300	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029431)	promoter-TSS (NM_029431)	68.0	NM_029431	75778.0	Mm.45092	NM_029431	ENSMUSG00000028145	Them4	2700077M13Rik|4921507I02Rik	thioesterase superfamily member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85673431-2	chr12	85673331	85673531	+	944.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28|LTR|ERVL	-13289.0	NM_016767	53314.0	Mm.6672	NM_016767	ENSMUSG00000034266	Batf	B-ATF|SFA-2	basic leucine zipper transcription factor, ATF-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28702131-4	chr17	28701966	28702166	+	751.767883	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168514, intron 2 of 12)	MTE2b|LTR|ERVL-MaLR	9498.0	NM_001357724	26416.0	Mm.311337	NM_011951	ENSMUSG00000053436	Mapk14	CSBP2|Crk1|Csbp1|Mxi2|PRKM14|PRKM15|p38|p38-alpha|p38MAPK|p38a|p38alpha	mitogen-activated protein kinase 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-43625742-2	chr7	43625642	43625842	+	551.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8997.0	NM_028236	72431.0	Mm.158821	NM_028236	ENSMUSG00000030472	Ceacam18	2010110O04Rik	carcinoembryonic antigen-related cell adhesion molecule 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46142877-4	chr8	46142773	46142973	+	912.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18727.0	NM_207213	102141.0	Mm.267258	NM_207213	ENSMUSG00000038291	Snx25	AI661919|Gm1699|Gm173|Sbbi31	sorting nexin 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-53944108-4	chr19	53944046	53944246	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355242)	promoter-TSS (NM_001355242)	-160.0	NM_001168505	56392.0	Mm.228669	NM_019658	ENSMUSG00000024976	Shoc2	AU017287|Sur8|mKIAA0862	soc-2 (suppressor of clear) homolog (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-24682097-4	chr1	24681994	24682194	+	940.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310483, intron 1 of 15)	MTC|LTR|ERVL-MaLR	3176.0	NM_001310483	68421.0	Mm.336563	NM_026719	ENSMUSG00000073725	Lmbrd1	0910001K20Rik|AV347960	LMBR1 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135875306-4	chr4	135875192	135875392	+	856.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1446.0	NM_026383	52830.0	Mm.29159	NM_026383	ENSMUSG00000028675	Pnrc2	0610011E17Rik|D4Bwg0593e	proline-rich nuclear receptor coactivator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-137031681-2	chr5	137031581	137031781	+	722.833374	f1_balb.idr|f1_c57bl6.idr	exon (NM_001039385, exon 2 of 2)	exon (NM_001039385, exon 2 of 2)	1386.0	NM_001039385	381677.0	Mm.389697	NM_001039385	ENSMUSG00000037428	Vgf	Gm1052	VGF nerve growth factor inducible	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28209139-4	chr7	28209049	28209249	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19C|LTR|ERVK	28833.0	NM_001271370	13549.0	Mm.57249	NM_010092	ENSMUSG00000002409	Dyrk1b	Mirk	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-21406964-3	chr19	21406857	21407057	+	716.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010266, intron 10 of 13)	intron (NM_010266, intron 10 of 13)	65704.0	NM_010266	14544.0	Mm.45054	NM_010266	ENSMUSG00000058624	Gda	AU015411|AW047581|GAH	guanine deaminase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-165585924-2	chr1	165585824	165586024	+	669.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48617.0	NM_001001880	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-79893484-2	chr17	79893384	79893584	+	562.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357752, intron 1 of 13)	intron (NM_001357752, intron 1 of 13)	2639.0	NM_178050	56298.0	Mm.175403	NM_019717	ENSMUSG00000059811	Atl2	2010110I21Rik|AA407293|AV334690|Aip-2|Arl6ip2	atlastin GTPase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141009154-4	chr7	141009055	141009255	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_025378)	TTS (NM_025378)	1589.0	NM_025378	66141.0	Mm.141021	NM_025378	ENSMUSG00000025492	Ifitm3	1110004C05Rik|Cd225|Cdw217|DSPA2b|Fgls|IP15|mil-1	interferon induced transmembrane protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91972909-2	chr2	91972809	91973009	+	982.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4_|SINE|ID	-9346.0	NM_138306	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	0.666120884463873	0.23033776962796	0.661189842893677	0.220128976689845	0.676067166238405	0.231639939755274	0.670507823550143	0.220904171574607	0.0413502936161977	0.983290037915036	1
Merged-chr4-145096992-4	chr4	145096876	145097076	+	890.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276465, intron 42 of 69)	intron (NM_001276465, intron 42 of 69)	93690.0	NM_001276502	230895.0	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-4616812-4	chr13	4616724	4616924	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7660.0	NM_018859	56043.0	Mm.251908	NM_018859	ENSMUSG00000045410	Akr1e1	1810061I10Rik|Akr1e2	aldo-keto reductase family 1, member E1	protein-coding	5.47556708755042	5.43876548620819	4.99970340316082	5.4105416051297	4.6384798060898	5.14889653300679	5.40928096110167	5.07705078658665	-0.301320712983534	0.325975917704714	0.828029441204197
Merged-chr3-105053045-4	chr3	105052926	105053126	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163332)	promoter-TSS (NM_001163332)	-73.0	NM_001163333	80281.0	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-114072146-4	chr7	114072078	114072278	+	783.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025846, intron 1 of 5)	intron (NM_025846, intron 1 of 5)	45603.0	NM_025846	66922.0	Mm.276572	NM_025846	ENSMUSG00000055723	Rras2	2610016H24Rik|C86394|TC21	related RAS viral (r-ras) oncogene 2	protein-coding	-0.202601233854872	-0.186377721093157	0.600029811401945	-0.195773537934413	-0.201583646321926	0.337305003454062	-0.19050512421464	-0.0195590985412323	-0.465925673664867	0.843282949569808	1
Merged-chr7-34973239-3	chr7	34973132	34973332	+	842.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008820, intron 9 of 14)	intron (NM_008820, intron 9 of 14)	60825.0	NM_008820	18624.0	Mm.69751	NM_008820	ENSMUSG00000063931	Pepd	Pep-4|Pep4|dal	peptidase D	protein-coding	-0.427269964677487	-0.590941365039988	-0.596693612528735	-0.601190651356632	-0.607636615536061	0.58699934609872	-0.595417584632059	-0.600401243705851	3.02056081684317	0.247037403733976	1
Merged-chr15-51764881-2	chr15	51764781	51764981	+	560.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	100580.0	NM_080635	68135.0	Mm.289800	NM_080635	ENSMUSG00000022312	Eif3h	1110008A16Rik|40kD|9430017H16Rik|EIF3-P40|EIF3-gamma|Eif3s3	eukaryotic translation initiation factor 3, subunit H	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-75251721-4	chr1	75251598	75251798	+	981.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359281, intron 19 of 22)	intron (NM_001359281, intron 19 of 22)	12073.0	NM_001359281	19275.0	Mm.2902	NM_008985	ENSMUSG00000026204	Ptprn	IA-2|mIA-A|mKIAA4064	protein tyrosine phosphatase, receptor type, N	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-155064260-2	chr4	155064160	155064360	+	822.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2770.0	NM_001042407	668173.0	Mm.133114	NM_001042407	ENSMUSG00000029047	Pex10	AV128229|Gm142	peroxisomal biogenesis factor 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81628404-1	chr10	81628304	81628504	+	565.0	f0_balb.idr	promoter-TSS (NM_027480)	promoter-TSS (NM_027480)	-136.0	NM_027480	70615.0	Mm.304382	NM_027480	ENSMUSG00000054708	Ankrd24	4631433D01Rik|5730519E19Rik|D10Bur2e	ankyrin repeat domain 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-123962624-4	chr4	123962537	123962737	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	45204.0	NM_017475	54170.0	Mm.220922	NM_017475	ENSMUSG00000028646	Rragc	AU041672|Gtr2|RAGC|TIB929|YGR163W	Ras-related GTP binding C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-77466162-2	chr11	77466062	77466262	+	623.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_139129, intron 2 of 8)	intron (NM_139129, intron 2 of 8)	2249.0	NM_139130	216961.0	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-102137798-4	chr11	102137704	102137904	+	813.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-7709.0	NM_145829	217214.0	Mm.31686	NM_145829	ENSMUSG00000048217	Nags	1700120E20Rik|argA	N-acetylglutamate synthase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69992179-2	chr11	69992079	69992279	+	771.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019749, intron 1 of 3)	intron (NM_019749, intron 1 of 3)	809.0	NM_019749	56486.0	Mm.272460	NM_019749	ENSMUSG00000018567	Gabarap	-	gamma-aminobutyric acid receptor associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-92784930-2	chr6	92784830	92785030	+	672.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175314, intron 28 of 29)	intron (NM_175314, intron 28 of 29)	-78746.0	NM_001081146	243548.0	Mm.248820	NM_001081146	ENSMUSG00000030020	Prickle2	6230400G14Rik|6720451F06Rik|mpk2	prickle planar cell polarity protein 2	protein-coding	-0.662826441749988	-1.00555184936033	-1.01675512286785	-1.01992432642343	-0.654846858003193	-1.00312405325568	-1.01421894731451	-1.01959449741028	0.0418081237259606	0.989738874530268	1
Merged-chr9-119980935-3	chr9	119980779	119980979	+	817.200012	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153287, intron 1 of 4)	intron (NM_153287, intron 1 of 4)	2144.0	NM_001357560	215418.0	Mm.491094	NM_153287	ENSMUSG00000032515	Csrnp1	4931429D10Rik|Axud1|CSRNP-1|URAX1|taip-3	cysteine-serine-rich nuclear protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-67723974-2	chr18	67723874	67724074	+	727.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008977, intron 1 of 9)	CpG	647.0	NM_001127177	19255.0	Mm.260433	NM_008977	ENSMUSG00000024539	Ptpn2	AI325124|Ptpt|TC-PTP	protein tyrosine phosphatase, non-receptor type 2	protein-coding	0.692218311154927	0.255064968649755	0.419074427131504	0.244567930546721	0.378446662395903	0.858234331063522	0.423850005091741	0.541370959293166	0.977993415309642	0.578820586500934	1
Merged-chr14-21821118-2	chr14	21821018	21821218	+	683.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	-10443.0	NM_011695	22334.0	Mm.262327	NM_011695	ENSMUSG00000021771	Vdac2	Vdac6|mVDAC2|mVDAC6	voltage-dependent anion channel 2	protein-coding	-1.01619048107133	-0.995033651274249	-1.00815691281228	-1.0117845606299	-0.146812645560773	-0.992189785753965	-1.00518609405377	-1.01132261587602	3.17967657538059	0.326742161226751	1
Merged-chr14-7913999-4	chr14	7913882	7914082	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081427, intron 25 of 45)	intron (NM_001081427, intron 25 of 45)	80200.0	NM_007870	13421.0	Mm.272258	NM_007870	ENSMUSG00000025279	Dnase1l3	DNasegamma|Dhp2|Lsd	deoxyribonuclease 1-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-78059858-2	chr11	78059758	78059958	+	728.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001040403, exon 11 of 11)	3' UTR (NM_001040403, exon 11 of 11)	-13147.0	NR_029556	387162.0		NR_029556	ENSMUSG00000065401	Mir144	Mirn144|mir-144|mmu-mir-144	microRNA 144	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-61586704-3	chr8	61586552	61586752	+	946.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293772, intron 10 of 21)	B4|SINE|B4	4517.0	NM_001293774	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	0.585508248029201	0.459742246541266	1.24146451136797	0.889642094135898	0.837823026999684	0.461604217027886	0.453285984935962	1.00835481077816	-0.623160669746347	0.711720891602798	1
Merged-chr2-102988039-4	chr2	102987940	102988140	+	908.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	85473.0	NM_175094	27402.0	Mm.315011	NM_175094	ENSMUSG00000010914	Pdhx	AI481367|E3bp|Pdx1	pyruvate dehydrogenase complex, component X	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-87737294-3	chr16	87737147	87737347	+	965.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	BGLII_Mur|LTR|ERVK	38293.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117688443-2	chr10	117688343	117688543	+	925.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001288586)	TTS (NM_001288586)	22315.0	NM_010786	17246.0	Mm.22670	NM_010786	ENSMUSG00000020184	Mdm2	1700007J15Rik|AA415488|Mdm-2	transformed mouse 3T3 cell double minute 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-100672208-2	chr6	100672108	100672308	+	685.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-1051.0	NM_181590	72171.0	Mm.256022	NM_181590	ENSMUSG00000035378	Shq1	2810403P18Rik|Grim-1	SHQ1 homolog (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-97209841-2	chr3	97209741	97209941	+	729.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_029933, exon 8 of 10)	exon (NM_029933, exon 8 of 10)	17523.0	NM_029933	77578.0	Mm.226175	NM_029933	ENSMUSG00000038256	Bcl9	2610202E01Rik|8030475K17Rik|A330041G23Rik|Gm130	B cell CLL/lymphoma 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-142794778-4	chr5	142794694	142794894	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178242, intron 2 of 15)	intron (NM_178242, intron 2 of 15)	22593.0	NM_178242	231861.0	Mm.354649	NM_178242	ENSMUSG00000039477	Tnrc18	BC025631|EG381742|Zfp469	trinucleotide repeat containing 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-59943749-3	chr10	59943643	59943843	+	693.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	8027.0	NM_029083	74747.0	Mm.21697	NM_029083	ENSMUSG00000020108	Ddit4	5830413E08Rik|AA415483|REDD1|Rtp801|dig2	DNA-damage-inducible transcript 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25250799-4	chr7	25250717	25250917	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010155)	promoter-TSS (NM_010155)	-59.0	NM_010155	13875.0	Mm.8068	NM_010155	ENSMUSG00000040857	Erf	-	Ets2 repressor factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-149101253-4	chr3	149101163	149101363	+	909.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-146628.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	3.29949978275388	3.27586866120897	3.56228175699272	2.88193939232791	3.2595939338127	2.96896512141018	3.19268402362395	2.78244914721141	-0.357320527929537	0.5503380239721	0.958882219733107
Merged-chr4-32095-1	chr4	31995	32195	+	577.0	f1_c57bl6.idr	Intergenic	Intergenic	-3139988.0	NM_001167534	100312470.0	Mm.480297	NM_001167534	ENSMUSG00000115072	Vmn1r2	Gm11776	vomeronasal 1 receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-20098103-3	chr13	20097990	20098190	+	741.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	7583.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	1.91468453803435	1.86946964197029	1.95225479703142	1.1776480693019	2.37355052210893	1.70475552931171	1.65121029910338	2.70329770602428	1.12979277554663	0.267235582024767	0.770126304195315
Merged-chr9-43238731-2	chr9	43238631	43238831	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178644, intron 1 of 3)	intron (NM_178644, intron 1 of 3)	1085.0	NM_178644	102644.0	Mm.246479	NM_178644	ENSMUSG00000032014	Oaf	AL024221|D130038B21Rik|D9Ucla1	out at first homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-150666378-2	chr2	150666278	150666478	+	840.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_080575, intron 1 of 13)	intron (NM_080575, intron 1 of 13)	-1116.0	NR_040331	109344.0	Mm.440012	NR_040331	ENSMUSG00000087406	E130215H24Rik	-	RIKEN cDNA E130215H24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-29925028-3	chr19	29924916	29925116	+	722.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133775)	promoter-TSS (NM_133775)	-97.0	NM_133775	77125.0	Mm.182359	NM_133775	ENSMUSG00000024810	Il33	9230117N10Rik|Il-33|Il1f11|NF-HEV	interleukin 33	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88395468-2	chr3	88395368	88395568	+	790.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310605, intron 2 of 2)	intron (NM_001310605, intron 2 of 2)	-11002.0	NM_007541	12096.0	Mm.389459	NM_007541	ENSMUSG00000074483	Bglap	BGP|Bglap1|OC|OG1|mOC-A	bone gamma carboxyglutamate protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-60810894-1	chr19	60810794	60810994	+	546.0	f1_c57bl6.idr	promoter-TSS (NM_001347464)	promoter-TSS (NM_001347464)	-661.0	NM_001360619	67894.0	Mm.26148	NM_026437	ENSMUSG00000024993	Fam45a	1810055E12Rik	family with sequence similarity 45, member A	protein-coding	2.42430865855198	0.891950933052371	2.59304872956239	1.10442137936367	1.0509918688031	0.898109049270784	0.870142285431	2.3831528819583	-1.15495345426628	0.383960911216211	0.875009253291411
Merged-chr8-3677441-4	chr8	3677338	3677538	+	736.68335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025701, intron 1 of 1)	MTEb|LTR|ERVL-MaLR	961.0	NM_025701	66682.0	Mm.29090	NM_025701	ENSMUSG00000040236	Trappc5	4021401A16Rik|TRS31	trafficking protein particle complex 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129528076-1	chr2	129527976	129528176	+	620.0	f1_c57bl6.idr	intron (NM_177653, intron 1 of 6)	intron (NM_177653, intron 1 of 6)	8526.0	NM_177653	228592.0	Mm.452175	NM_177653	ENSMUSG00000043727	F830045P16Rik	Sirpb3	RIKEN cDNA F830045P16 gene	protein-coding	0.582275573091304	0.615039775723434	1.33820476894609	1.18494687208888	0.749839375639046	0.617413220821665	1.35193178776923	1.19270756916042	0.161054080476486	0.919078192681545	0.998431161219273
Merged-chr11-94489979-2	chr11	94489879	94490079	+	582.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_027984, exon 10 of 10)	3' UTR (NM_027984, exon 10 of 10)	-4669.0	NM_144827	217116.0	Mm.156123	NM_144827	ENSMUSG00000020867	Spata20	Tisp78	spermatogenesis associated 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6298883-2	chr19	6298783	6298983	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010119, exon 5 of 5)	3' UTR (NM_010119, exon 5 of 5)	-7574.0	NM_001033342	240505.0	Mm.329622	NM_001033342	ENSMUSG00000024769	Cdc42bpg	BC046418|MRCKgamma	CDC42 binding protein kinase gamma (DMPK-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-114129508-2	chr5	114129408	114129608	+	619.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001040691)	promoter-TSS (NM_001040691)	-927.0	NM_001040691	22256.0	Mm.1393	NM_011677	ENSMUSG00000029591	Ung	UNG1|UNG2	uracil DNA glycosylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-32800343-4	chr4	32800243	32800443	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175364)	promoter-TSS (NM_175364)	84.0	NM_175364	108755.0	Mm.1182	NM_175364	ENSMUSG00000045854	Lyrm2	2610208E05Rik	LYR motif containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-55458381-4	chr11	55458275	55458475	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009720, intron 1 of 3)	intron (NM_009720, intron 1 of 3)	2833.0	NM_009720	11927.0	Mm.217759	NM_009720	ENSMUSG00000018585	Atox1	AI256639|Atx1	antioxidant 1 copper chaperone	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-92444980-2	chr5	92444880	92445080	+	792.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007644, intron 11 of 11)	intron (NM_007644, intron 11 of 11)	-9781.0	NM_183392	269113.0	Mm.275289	NM_183392	ENSMUSG00000034826	Nup54	3110079L04Rik|54kDa	nucleoporin 54	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-116672953-4	chr4	116672864	116673064	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12635.0	NM_011034	18477.0	Mm.30929	NM_011034	ENSMUSG00000028691	Prdx1	MSP23|NkefA|OSF-3|OSF3|PAG|Paga|PrdxI|PrxI|TDX2|TPxA|Tdpx2|prx1	peroxiredoxin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-46717177-4	chr7	46717058	46717258	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1482.0	NM_011315	20210.0	Mm.14277	NM_011315	ENSMUSG00000040026	Saa3	AV098916|Saa-3|l7R3	serum amyloid A 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-75277566-2	chr9	75277469	75277669	+	821.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081322, intron 22 of 40)	L3b|LINE|CR1	-28719.0	NM_010313	14697.0	Mm.17604	NM_010313	ENSMUSG00000032192	Gnb5	GBS|Gbeta5|flr	guanine nucleotide binding protein (G protein), beta 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-27022100-4	chr18	27022014	27022214	+	728.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1267957.0	NM_001362334	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-8871148-2	chr10	8871087	8871287	+	837.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 1 of 19)	intron (NM_175155, intron 1 of 19)	14883.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-88651065-2	chr15	88650965	88651165	+	644.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50763.0	NM_027306	70073.0	Mm.45306	NM_027306	ENSMUSG00000054117	Zdhhc25	1700030J15Rik	zinc finger, DHHC domain containing 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-66494996-3	chr8	66494896	66495096	+	958.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8466.0	NM_001357208	66282.0	Mm.294985	NM_025465	ENSMUSG00000025591	Tma16	1810029B16Rik	translation machinery associated 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-101253059-1	chr4	101252959	101253159	+	702.0	f0_balb.idr	intron (NM_146145, intron 1 of 24)	intron (NM_146145, intron 1 of 24)	12223.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-63403323-4	chr4	63403215	63403415	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001045514, exon 1 of 22)	5' UTR (NM_001045514, exon 1 of 22)	130.0	NM_001045514	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-64302304-2	chr1	64302204	64302404	+	987.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER99|DNA|hAT?	-180915.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-25524900-2	chr14	25524800	25525000	+	734.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 2 of 23)	intron (NM_183208, intron 2 of 23)	-9539.0	NR_037236	100526533.0		NR_037236	ENSMUSG00000093081	Mir3075	mir-3075|mmu-mir-3075	microRNA 3075	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-41766874-2	chr5	41766774	41766974	+	714.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2654.0	NM_007524	12020.0	Mm.2530	NM_007524	ENSMUSG00000049691	Nkx3-2	Bapx1|NKX3.2|Nkx-3.2	NK3 homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-84466257-4	chr17	84466182	84466382	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183021)	promoter-TSS (NM_183021)	-74.0	NM_183021	240174.0	Mm.246767	NM_177826	ENSMUSG00000024251	Thada	6530405K19|A930021O22|AU019899|BC052885|GITA	thyroid adenoma associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56139470-2	chr17	56139370	56139570	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001130456, intron 1 of 16)	intron (NM_001130456, intron 1 of 16)	873.0	NM_001130456	20359.0	Mm.8029	NM_013662	ENSMUSG00000001227	Sema6b	Sema|Seman|VIb|semaZ	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-87002294-2	chr6	87002194	87002394	+	950.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177762, exon 20 of 20)	3' UTR (NM_177762, exon 20 of 20)	-7542.0	NM_001170591	56748.0	Mm.23809	NM_020045	ENSMUSG00000029993	Nfu1	0610006G17Rik|CGI-33|Hirip5	NFU1 iron-sulfur cluster scaffold	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165969022-4	chr2	165968930	165969130	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23607.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	3.78060849955765	3.0925518409403	3.54071116125328	4.14534808377524	3.49170478714951	1.75613769464066	3.00834460217732	3.02132392534786	-1.1457176269262	0.0769508206316514	0.421659069084191
Merged-chr11-20934902-4	chr11	20934813	20935013	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CAAAA)n|Simple_repeat|Simple_repeat	-103805.0	NM_173752	216551.0	Mm.76694	NM_173752	ENSMUSG00000042363	Lgalsl	1110067D22Rik|A530071M23|Grpa|Hspc159|Lgalsla	lectin, galactoside binding-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-72342665-2	chr11	72342565	72342765	+	786.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	18631.0	NM_001282007	21689.0	Mm.42257	NM_011569	ENSMUSG00000020799	Tekt1	MT14	tektin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102399876-2	chr12	102399776	102399976	+	757.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_011175, intron 10 of 13)	intron (NM_011175, intron 10 of 13)	39937.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-105031522-4	chr12	105031477	105031677	+	999.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028576)	promoter-TSS (NR_028576)	-228.0	NR_028576	100306943.0		NR_028576	ENSMUSG00000088789	Scarna13	U93	small Cajal body-specific RNA 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-108649913-4	chr9	108649808	108650008	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011790)	promoter-TSS (NM_011790)	-500.0	NM_001357286	23807.0	Mm.290447	NM_011790	ENSMUSG00000064145	Arih2	AI843547|ARI2|TRIAD1|UIP48	ariadne RBR E3 ubiquitin protein ligase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-119107934-2	chr4	119107872	119108072	+	588.416626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011400)	promoter-TSS (NM_011400)	-773.0	NM_011400	20525.0	Mm.21002	NM_011400	ENSMUSG00000028645	Slc2a1	Glut-1|Glut1	solute carrier family 2 (facilitated glucose transporter), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127075339-2	chr10	127075239	127075439	+	904.3333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3568.0	NM_001301014	216439.0	Mm.336761	NM_001033263	ENSMUSG00000025422	Agap2	AGAP-2|Centg1|PIKE|cnt-g1|mKIAA0167	ArfGAP with GTPase domain, ankyrin repeat and PH domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98955286-4	chr11	98955187	98955387	+	891.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009024, intron 2 of 8)	intron (NM_009024, intron 2 of 8)	-5184.0	NM_001176528	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-4250723-4	chr8	4250542	4250742	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195258, intron 5 of 6)	intron (NM_001195258, intron 5 of 6)	2428.0	NM_001195258	100044509.0	Mm.439193	NM_001195258	ENSMUSG00000089736	Tgfbr3l	Gm14378	transforming growth factor, beta receptor III-like	protein-coding	2.0255669473298	1.43323666608125	2.83542540347861	2.83236035852229	2.27844773934186	2.77365502524917	2.47123739714161	1.99563234020009	-0.0234670113837369	0.978901314066921	0.998431161219273
Merged-chr9-118870657-2	chr9	118870492	118870692	+	614.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 10 of 13)	MTE2a|LTR|ERVL-MaLR	-55944.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	1.34321989867748	1.0217479082809	0.752406227062866	1.29672142255483	1.89381142690452	2.09547902366444	0.756322316206837	0.740952285888809	1.38108069058734	0.331181927931351	0.83197671091297
Merged-chr6-34909372-2	chr6	34909272	34909472	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001013366, exon 2 of 15)	exon (NM_001013366, exon 2 of 15)	1459.0	NM_001013366	101240.0	Mm.152120	NM_001013366	ENSMUSG00000058486	Wdr91	9530020G05Rik|AI987683|AU018665	WD repeat domain 91	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126760268-2	chr7	126760168	126760368	+	867.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011952, intron 1 of 8)	intron (NM_011952, intron 1 of 8)	642.0	NM_011952	26417.0	Mm.8385	NM_011952	ENSMUSG00000063065	Mapk3	Erk-1|Erk1|Ert2|Esrk1|Mnk1|Mtap2k|Prkm3|p44|p44erk1|p44mapk	mitogen-activated protein kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-23785799-2	chr5	23785699	23785899	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-1912.0	NM_177323	72772.0	Mm.133300	NM_177323	ENSMUSG00000028999	Rint1	1500019C06Rik|2810450M21Rik|Rint-1	RAD50 interactor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5567493-2	chr17	5567393	5567593	+	992.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	74893.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-136895754-6	chr4	136895596	136895796	+	943.1527710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_007572)	TTS (NM_007572)	-2782.0	NM_007574	12262.0	Mm.439732	NM_007574	ENSMUSG00000036896	C1qc	AI385742|C1qg|Ciqc	complement component 1, q subcomponent, C chain	protein-coding	2.16222547446889	2.44632150906634	1.9330672233144	1.23797706181039	1.93630200101042	2.78553449611483	3.23728225238848	1.49568997716223	1.16150923546451	0.233568843509947	0.729021588041712
Merged-chr5-139449964-2	chr5	139449864	139450064	+	816.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028469, intron 2 of 4)	intron (NM_028469, intron 2 of 4)	10570.0	NM_028469	73212.0	Mm.84294	NM_028469	ENSMUSG00000053553	3110082I17Rik	AW411904	RIKEN cDNA 3110082I17 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-70761223-4	chr9	70761124	70761324	+	979.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007399, intron 9 of 15)	intron (NM_007399, intron 9 of 15)	82242.0	NM_007399	11487.0	Mm.3037	NM_007399	ENSMUSG00000054693	Adam10	1700031C13Rik|MADM|kuz|kuzbanian	a disintegrin and metallopeptidase domain 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-100883414-2	chr6	100883314	100883514	+	700.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	49776.0	NM_182939	232314.0	Mm.27223	NM_182939	ENSMUSG00000052144	Ppp4r2	BE691708|C230060M08Rik	protein phosphatase 4, regulatory subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166522040-2	chr2	166521940	166522140	+	672.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42482.0	NR_152154	433503.0	Mm.491336	NR_152154		Gm29679	-	predicted gene, 29679	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111967004-4	chr12	111966846	111967046	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361914)	promoter-TSS (NM_001361914)	63.0	NM_027360	70257.0	Mm.318	NM_027360	ENSMUSG00000021290	2010107E04Rik	9430003J03Rik|AU043134|AV124504|Mp68	RIKEN cDNA 2010107E04 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16848745-2	chr7	16848645	16848845	+	980.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001252458, exon 5 of 19)	exon (NM_001252458, exon 5 of 19)	5680.0	NM_178900	101540.0	Mm.1881	NM_178900	ENSMUSG00000041187	Prkd2	AI325941|PKD2	protein kinase D2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-7175294-3	chr17	7175185	7175385	+	585.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011299, intron 1 of 20)	intron (NM_011299, intron 1 of 20)	5170.0	NM_011299	20112.0	Mm.268383	NM_011299	ENSMUSG00000023809	Rps6ka2	90kDa|D17Wsu134e|Rps6ka-rs1|Rsk3|p90rsk|pp90rsk	ribosomal protein S6 kinase, polypeptide 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-165764250-4	chr1	165764142	165764342	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011804, intron 1 of 3)	intron (NM_011804, intron 1 of 3)	484.0	NM_011804	433375.0	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-12909669-4	chr7	12909549	12909749	+	984.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001001447)	TTS (NM_001001447)	11840.0	NM_001290441	232878.0	Mm.40706	NM_001001447	ENSMUSG00000054715	Zscan22	AW227621|D530006B18Rik|Hkr2	zinc finger and SCAN domain containing 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115281815-1	chr5	115281715	115281915	+	631.0	f1_c57bl6.idr	intron (NM_026504, intron 1 of 6)	Tigger6a|DNA|TcMar-Tigger	2113.0	NM_026504	52064.0	Mm.290142	NM_026504	ENSMUSG00000041733	Coq5	1810014G04Rik|D5Ertd33e	coenzyme Q5 methyltransferase	protein-coding	0.697552088327642	1.08953973839966	0.182391766257782	0.176080074685093	0.167068665064672	0.881269288817711	0.184186561548632	0.177186513859788	-1.1173419085232	0.586868728777314	1
Merged-chr7-38004472-1	chr7	38004372	38004572	+	735.0	f0_balb.idr	intron (NM_011274, intron 1 of 10)	intron (NM_011274, intron 1 of 10)	15080.0	NM_011274	19777.0	Mm.387220	NM_011274	ENSMUSG00000030421	Uri1	C80913|NNX3|Rmp	URI1, prefoldin-like chaperone	protein-coding	0.587421527719719	0.64261455814956	1.23559978161249	0.611287032825609	2.30137862802396	0.912001430010386	1.07883410266516	1.33777849636927	2.90889133363798	0.0523781618961012	0.334910861389138
Merged-chr9-119961839-2	chr9	119961739	119961939	+	564.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_028735, exon 20 of 29)	exon (NM_028735, exon 20 of 29)	21184.0	NM_001357560	215418.0	Mm.491094	NM_153287	ENSMUSG00000032515	Csrnp1	4931429D10Rik|Axud1|CSRNP-1|URAX1|taip-3	cysteine-serine-rich nuclear protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69418183-4	chr11	69418099	69418299	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-4524.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	5.71049272973298	6.14191983282984	6.20784218180457	5.53229066157883	6.02708323858873	6.26053639761332	6.52030387403522	6.29357225858614	0.39842852046891	0.0972402146221557	0.484505022855741
Merged-chr11-117238317-2	chr11	117238217	117238417	+	983.0833130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113486, intron 2 of 11)	intron (NM_001113486, intron 2 of 11)	-27929.0	NM_001113487	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-82913920-4	chr10	82913828	82914028	+	827.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A|LTR|ERVL-MaLR	47302.0	NM_025499	66341.0	Mm.443284	NM_025499	ENSMUSG00000109864	Eid3	1700027M21Rik|NS4EB	EP300 interacting inhibitor of differentiation 3	protein-coding	0.617093654102691	1.51845219033043	1.65386290256753	0.635748563908403	0.619904904959671	0.663783460479293	1.46726654324034	1.29529759615661	-0.505723221233181	0.753946378511234	0.998431161219273
Merged-chr12-59053944-2	chr12	59053844	59054044	+	545.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001306217, intron 1 of 4)	intron (NM_001306217, intron 1 of 4)	7528.0	NM_001306218	78232.0	Mm.290070	NM_030057	ENSMUSG00000020993	Trappc6b	5830498C14Rik|C79212	trafficking protein particle complex 6B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-103171039-4	chr11	103170939	103171139	+	997.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001077698)	promoter-TSS (NM_001077698)	-99.0	NM_001077698	57778.0	Mm.138913	NM_019679	ENSMUSG00000055805	Fmnl1	8030453N10Rik|AI553564|Fmnl|Fnrl|Frls	formin-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-119917125-4	chr1	119917006	119917206	+	926.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3938.0	NM_175106	66343.0	Mm.49942	NM_175106	ENSMUSG00000036975	Tmem177	2300008B03Rik	transmembrane protein 177	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-12808938-4	chr18	12808802	12809002	+	809.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252490, intron 3 of 13)	intron (NM_001252490, intron 3 of 13)	11005.0	NR_045524	64291.0	Mm.259470	NM_020573	ENSMUSG00000044252	Osbpl1a	G430090F17Rik|Gm753|ORP-1|Osbpl1b	oxysterol binding protein-like 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-103357469-2	chr11	103357369	103357569	+	781.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205236, intron 3 of 17)	intron (NM_001205236, intron 3 of 17)	6223.0	NM_183288	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-107323999-2	chr11	107323899	107324099	+	837.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359616, intron 2 of 8)	intron (NM_001359616, intron 2 of 8)	-134618.0	NM_001161329	68979.0	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135960518-1	chr5	135960418	135960618	+	635.5	f1_balb.idr	3' UTR (NM_001160366, exon 11 of 11)	3' UTR (NM_001160366, exon 11 of 11)	13958.0	NM_001160366	109267.0	Mm.332750	NM_001160366	ENSMUSG00000029699	Ssc4d	C330016E03Rik|S4D-SRCRB|SRCRB-S4D|Srcrb4d	scavenger receptor cysteine rich family, 4 domains	protein-coding	0.20461823661575	0.0808227032634694	0.0753012461525979	0.0710433654347648	0.706318809129583	0.43655347959694	0.0765187629707934	0.601901678122175	3.23730005893208	0.117869701499657	1
Merged-chr16-24626781-2	chr16	24626681	24626881	+	779.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 5 of 12)	intron (NM_178665, intron 5 of 12)	-95074.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-46106391-2	chr10	46106291	46106491	+	580.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR26_Mus|LTR|ERVK	-138357.0	NR_028274	100302593.0		NR_028274	ENSMUSG00000095118	Snord14d	Gm23710	small nucleolar RNA, C/D box 14D	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114805838-2	chr11	114805738	114805938	+	552.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_181749, intron 2 of 2)	intron (NM_181749, intron 2 of 2)	6914.0	NM_181749	217302.0	Mm.269127	NM_181749	ENSMUSG00000034677	Gpr142	PGR2	G protein-coupled receptor 142	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-89058887-2	chr15	89058787	89058987	+	726.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001002005)	promoter-TSS (NM_001002005)	-839.0	NM_001002005	406218.0	Mm.483059	NM_001002005	ENSMUSG00000058441	Panx2	-	pannexin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-130170788-4	chr5	130170684	130170884	+	972.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1035.0	NM_001199059	56715.0	Mm.288639	NM_019983	ENSMUSG00000025340	Rabgef1	Rab5ef|Rabex5|Rin2	RAB guanine nucleotide exchange factor (GEF) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-32519565-3	chr6	32519452	32519652	+	801.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175750, intron 1 of 31)	intron (NM_175750, intron 1 of 31)	8411.0	NR_040277	319849.0	Mm.440860	NR_040277	ENSMUSG00000086763	Plxna4os1	B230378P21Rik	plexin A4, opposite strand 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-29271174-4	chr6	29271076	29271276	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1312.0	NM_001190461	69573.0	Mm.45161	NM_023516	ENSMUSG00000043421	Hilpda	2310016C08Rik|AW049004|Hig2	hypoxia inducible lipid droplet associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-127559395-2	chr2	127559295	127559495	+	757.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17978.0	NM_138750	192212.0	Mm.34171	NM_138750	ENSMUSG00000027376	Prom2	AI507243|Prom-rp	prominin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6895765-4	chr19	6895661	6895861	+	923.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR44-int|LTR|ERVK	-13937.0	NM_001166370	67674.0	Mm.318804	NM_026306	ENSMUSG00000038812	Trmt112	0610038D11Rik|Trm112p	tRNA methyltransferase 11-2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3767500-2	chr4	3767400	3767600	+	919.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 10 of 12)	intron (NM_001111096, intron 10 of 12)	52536.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-47693344-3	chr8	47693244	47693444	+	771.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18185.0	NM_023503	69260.0	Mm.430733	NM_023503	ENSMUSG00000063049	Ing2	2810011M06Rik|Ing1l|Ing2b|P33ING2	inhibitor of growth family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-12634676-2	chr18	12634576	12634776	+	588.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8857.0	NM_028341	72747.0	Mm.52526	NM_028341	ENSMUSG00000024424	Ttc39c	1700008N02Rik|2810439F02Rik	tetratricopeptide repeat domain 39C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-88296375-2	chr1	88296275	88296475	+	756.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A2|LTR|ERVL-MaLR	-10337.0	NM_134252	171382.0	Mm.218753	NM_134252	ENSMUSG00000036251	Trpm8	CMR1|LTRPC6|LTrpC-6|TRPP8|Trp-p8	transient receptor potential cation channel, subfamily M, member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-108580260-1	chr4	108580160	108580360	+	602.0	f1_balb.idr	promoter-TSS (NM_172697)	promoter-TSS (NM_172697)	806.0	NM_011015	18392.0	Mm.294154	NM_011015	ENSMUSG00000028587	Orc1	AA545195|MmORC1|Orc1l	origin recognition complex, subunit 1	protein-coding	1.21347400051048	1.52274052489993	1.60277500635154	1.10272268974845	1.36010212431158	1.36842823000215	0.911060399335677	2.24818836105128	0.706889045035399	0.56294218035686	0.960362415684079
Merged-chr6-84563108-2	chr6	84563008	84563208	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F|LTR|ERVL-MaLR	30702.0	NM_175475	232174.0	Mm.255246	NM_175475	ENSMUSG00000063415	Cyp26b1	CP26|P450RAI-2	cytochrome P450, family 26, subfamily b, polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-11942337-2	chr18	11942237	11942437	+	669.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_022021, intron 8 of 8)	intron (NM_022021, intron 8 of 8)	-101899.0	NR_035447	100316686.0		NR_035447	ENSMUSG00000084565	Mir1901	Mirn1901|mmu-mir-1901	microRNA 1901	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-29801958-4	chr11	29801845	29802045	+	893.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146016, intron 21 of 41)	MLT1E1A|LTR|ERVL-MaLR	23723.0	NM_176829	216622.0	Mm.443260	NM_176829	ENSMUSG00000078157	4931440F15Rik	Fem1ab	RIKEN cDNA 4931440F15 gene	protein-coding	1.80238802128154	1.79143448837127	1.71967036808814	1.17256509331608	1.25658767905275	0.826055952020859	0.810331265080477	0.796625292612297	-3.03928755810121	0.0351144088739453	0.26541953317202
Merged-chr14-65902970-3	chr14	65902869	65903069	+	808.722229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50775.0	NM_172604	219151.0	Mm.344095	NM_172604	ENSMUSG00000034463	Scara3	APC7|C130058N24Rik|CSR|CSR1|MSLR1|MSRL1	scavenger receptor class A, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-41393641-3	chr10	41393550	41393750	+	787.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56708.0	NM_001277229	268294.0	Mm.258475	NM_153398	ENSMUSG00000019826	Zbtb24	BC055367|Bif1|Bsg1|ZNF450	zinc finger and BTB domain containing 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129803584-4	chr4	129803492	129803692	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16887.0	NM_008974	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	6.13486324689448	6.13977914029348	5.49867589727832	6.72154794810915	6.00933895974996	6.13283901505631	5.96769356100804	5.90194325759691	-0.20704976633598	0.428795617027848	0.903416445927044
Merged-chr16-36669707-4	chr16	36669598	36669798	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3621.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-150243172-2	chr5	150243072	150243272	+	908.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16758.0	NM_172887	320365.0	Mm.216590	NM_172887	ENSMUSG00000056602	Fry	13CDNA73|9330186A19Rik|AF346502|AI462658|C87180|D930046M03|cg003|mKIAA4143	FRY microtubule binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123620231-4	chr5	123620129	123620329	+	818.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359224, intron 12 of 18)	intron (NM_001359224, intron 12 of 18)	-47214.0	NM_029929	77573.0	Mm.41372	NM_029929	ENSMUSG00000029434	Vps33a	3830421M04Rik|AI503300|AW048546|AW554476|bf	VPS33A CORVET/HOPS core subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-127247825-4	chr2	127247716	127247916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025296)	promoter-TSS (NM_025296)	0.0	NM_025296	26371.0	Mm.45179	NM_025296	ENSMUSG00000003662	Ciao1	AW210570|Wdr39	cytosolic iron-sulfur protein assembly 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-89081413-4	chr11	89081310	89081510	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033266, intron 2 of 3)	L2|LINE|L2	7569.0	NM_001033266	217071.0	Mm.342127	NM_001033266	ENSMUSG00000072553	Gm525	-	predicted gene 525	protein-coding	4.09331462997108	3.86919004296856	5.12685160271601	4.00786131903376	4.32399742400137	4.29807241124026	4.99103352877876	5.51974495432318	0.629076258230506	0.158916756528601	0.618250079387208
Merged-chr10-44348757-3	chr10	44348661	44348861	+	640.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358596, intron 6 of 6)	intron (NM_001358596, intron 6 of 6)	-10915.0	NR_035450	100316688.0		NR_035450	ENSMUSG00000089260	Mir1929	mir-1929|mmu-mir-1929	microRNA 1929	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-63932615-2	chr7	63932515	63932715	+	938.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021366, intron 1 of 1)	ORR1A2|LTR|ERVL-MaLR	6300.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19940376-2	chr7	19940276	19940476	+	698.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027308, intron 3 of 4)	intron (NM_027308, intron 3 of 4)	10367.0	NM_027308	70080.0	Mm.98583	NM_027308	ENSMUSG00000040498	Igsf23	2210010C17Rik	immunoglobulin superfamily, member 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19410844-1	chr7	19410744	19410944	+	581.0	f1_balb.idr	promoter-TSS (NM_007710)	promoter-TSS (NM_007710)	-250.0	NM_007710	12715.0	Mm.2375	NM_007710	ENSMUSG00000030399	Ckm	CPK-M|Ckmm|M-CK|MCK	creatine kinase, muscle	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-101795729-2	chr2	101795629	101795829	+	553.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355625, intron 1 of 8)	intron (NM_001355625, intron 1 of 8)	1978.0	NM_175181	72446.0	Mm.24138	NM_175181	ENSMUSG00000032841	Prr5l	2600010E01Rik|4833411O04Rik|Protor-2|Protor2	proline rich 5 like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-47055975-4	chr7	47055891	47056091	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5351.0	NM_026436	67893.0	Mm.27338	NM_026436	ENSMUSG00000010307	Tmem86a	1810054O13Rik|AI414959|AW742698	transmembrane protein 86A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-18733745-4	chr16	18733656	18733856	+	944.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-43091.0	NM_013805	12741.0	Mm.22768	NM_013805	ENSMUSG00000041378	Cldn5	AI854493|MBEC1|Tmvcf	claudin 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-58586896-2	chr2	58586796	58586996	+	595.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289660, intron 1 of 7)	intron (NM_001289660, intron 1 of 7)	19562.0	NM_001289660	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-41381624-4	chr13	41381534	41381734	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111324, intron 2 of 7)	intron (NM_001111324, intron 2 of 7)	-22633.0	NM_017464	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-88337201-2	chr10	88337101	88337301	+	986.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027878, intron 3 of 6)	URR1B|DNA|hAT-Charlie	19874.0	NM_027878	71712.0	Mm.35450	NM_027878	ENSMUSG00000020057	Dram1	1200002N14Rik|Dram	DNA-damage regulated autophagy modulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-44392806-1	chr19	44392706	44392906	+	572.0	f1_balb.idr	Intergenic	Intergenic	14903.0	NM_009127	20249.0	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	-0.0906153728685768	0.107743874997867	-0.0811958839800088	0.204749753645228	-0.0897435172659836	-0.0755417418699413	0.47297257079842	0.326657782269483	1.24163612876558	0.572506723854201	1
Merged-chr14-63195479-1	chr14	63195379	63195579	+	544.0	f1_balb.idr	Intergenic	Intergenic	-1954.0	NM_201610	382913.0	Mm.239490	NM_201610	ENSMUSG00000035121	Neil2	Gm1212|NEH2	nei like 2 (E. coli)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-111495881-3	chr9	111495793	111495993	+	933.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	56812.0	NM_172928	245038.0	Mm.26361	NM_172928	ENSMUSG00000032500	Dclk3	BC056929|C730036H08|Dcamkl3	doublecortin-like kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89416424-2	chr3	89416324	89416524	+	852.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016904, intron 1 of 2)	intron (NM_016904, intron 1 of 2)	1867.0	NM_016904	54124.0	Mm.3049	NM_016904	ENSMUSG00000028044	Cks1b	2410005G18Rik|2610005D03Rik|AA407784|Cks1|sid1334	CDC28 protein kinase 1b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100877314-2	chr7	100877214	100877414	+	954.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081116, intron 18 of 20)	intron (NM_001081116, intron 18 of 20)	5095.0	NR_037289	100526508.0		NR_037289	ENSMUSG00000093296	Mir3102	mmu-mir-3102	microRNA 3102	ncRNA	-1.84354474832578	-1.81325489144778	-1.53416061964661	-1.82993901100912	-1.8414184563789	-1.81126990231468	-1.82034119297928	-1.82859217979378	-1.52252619601533	0.665276690233728	1
Merged-chr13-65097240-4	chr13	65097148	65097348	+	909.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083901, intron 2 of 12)	ORR1D2-int|LTR|ERVL-MaLR	15734.0	NM_001083901	66631.0	Mm.239196	NM_133680	ENSMUSG00000038212	Mfsd14b	5730414C17Rik|AU045608|AW539692|Hiatl1	major facilitator superfamily domain containing 14B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-98835649-4	chr12	98835565	98835765	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081191, intron 21 of 43)	intron (NM_001081191, intron 21 of 43)	64643.0	NM_001160108	75553.0	Mm.25549	NM_029334	ENSMUSG00000021012	Zc3h14	1010001P15Rik|1700016A15Rik|2700069A02Rik|AU014748	zinc finger CCCH type containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-128803243-4	chr6	128803117	128803317	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14576.0	NM_008527	17059.0	Mm.480764	NM_008527	ENSMUSG00000030325	Klrb1c	AI462337|CD161|Klrb1b|Ly-59|Ly55c|Ly59|NK-RP1|NK1.1|NKR-P1.9|NKRP1|NKRP140|Nk-1|Nk-1.2|Nk1|Nk1.2|Nkrp1b|Nkrp1c|ly-55c	killer cell lectin-like receptor subfamily B member 1C	protein-coding	8.20125336453618	7.68499371650815	8.25132539533387	8.39668093009422	8.15776467178526	8.41643854534152	7.98227924776406	8.4637971938922	0.109755785304575	0.481799921338181	0.92959345432907
Merged-chr1-131867916-3	chr1	131867796	131867996	+	932.2666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144875, intron 2 of 5)	intron (NM_144875, intron 2 of 5)	619.0	NM_144875	226422.0	Mm.34027	NM_144875	ENSMUSG00000026433	Rab29	Rab7l1	RAB29, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-93198400-4	chr5	93198282	93198482	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017367, intron 2 of 6)	intron (NM_017367, intron 2 of 6)	8113.0	NM_017367	12453.0	Mm.250419	NM_017367	ENSMUSG00000063015	Ccni	-	cyclin I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105693841-2	chr8	105693741	105693941	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357333, intron 29 of 38)	CpG	-7307.0	NM_001047436	56513.0	Mm.472753	NM_019695	ENSMUSG00000005699	Pard6a	0710008C04Rik|2610010A15Rik|PAR-6A|PAR6alpha|Par-6|Par6|Par6c|TAX40|Tip-40	par-6 family cell polarity regulator alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-109751452-2	chr7	109751352	109751552	+	931.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_020050, intron 1 of 4)	intron (NM_020050, intron 1 of 4)	811.0	NM_020050	56786.0	Mm.240668	NM_020050	ENSMUSG00000031021	Tmem9b	2310004K06Rik|AW539847|D7H11orf15|ICRFP703B1614Q5.3	TMEM9 domain family, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-100091313-2	chr12	100091213	100091413	+	597.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21018.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-134304852-4	chr1	134304749	134304949	+	948.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001144855, intron 23 of 28)	intron (NM_001144855, intron 23 of 28)	14845.0	NM_031189	17928.0	Mm.16528	NM_031189	ENSMUSG00000026459	Myog	MYF4|bHLHc3|myo	myogenin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-64349853-3	chr7	64349762	64349962	+	940.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177893, intron 11 of 13)	intron (NM_177893, intron 11 of 13)	24233.0	NM_177893	330554.0	Mm.236510	NM_177893	ENSMUSG00000033458	Fan1	6030441H18Rik|Mtmr15|mFAN1	FANCD2/FANCI-associated nuclease 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134277154-2	chr6	134277083	134277283	+	629.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-119146.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	0.78660109547302	0.85832159175814	0.806882083140786	0.22032003866156	0.212894939556202	0.233849535365339	0.22705225905538	0.392708512299735	-3.39403190011343	0.0837039716756537	1
Merged-chr12-60598845-2	chr12	60598745	60598945	+	553.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	922975.0	NR_045049	100504101.0	Mm.235026	NR_045049	ENSMUSG00000113429	Gm20063	-	predicted gene, 20063	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-95497104-4	chr9	95496952	95497152	+	874.158325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357977, intron 2 of 25)	Lx9|LINE|L1	14944.0	NM_001357975	67958.0	Mm.292742	NM_026476	ENSMUSG00000032407	U2surp	2610101N10Rik|AU023006|Sr140	U2 snRNP-associated SURP domain containing	protein-coding	0.969893929538825	1.06933521879079	2.24868199306791	1.94888215040194	1.57992953763308	2.8043984999863	1.0453885930124	2.61411796534138	1.24457996098714	0.299371447786918	0.800780758458171
Merged-chr18-35748478-4	chr18	35748392	35748592	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	-7938.0	NM_001289592	72512.0	Mm.45995	NM_028261	ENSMUSG00000024349	Tmem173	2610307O08Rik|ERIS|MPYS|Mita|STING	transmembrane protein 173	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-73627598-2	chr7	73627498	73627698	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58965.0	NR_033604	244061.0	Mm.484605	NR_033604	ENSMUSG00000108337	Gm4971	EG244061	Smad nuclear interacting protein 1 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-27192410-3	chr8	27192308	27192508	+	876.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10139.0	NM_029674	76615.0	Mm.272794	NM_029674	ENSMUSG00000039720	Got1l1	1700083M11Rik	glutamic-oxaloacetic transaminase 1-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-9877472-3	chr2	9877377	9877577	+	776.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008091, exon 2 of 6)	exon (NM_008091, exon 2 of 6)	1123.0	NM_001355110	14462.0	Mm.313866	NM_008091	ENSMUSG00000015619	Gata3	Gata-3|jal	GATA binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-57949706-2	chr4	57949606	57949806	+	621.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011660, intron 3 of 4)	intron (NM_011660, intron 3 of 4)	6705.0	NM_011660	22166.0	Mm.260618	NM_011660	ENSMUSG00000028367	Txn1	ADF|AW550880|Trx1|Txn	thioredoxin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-44535621-2	chr13	44535521	44535721	+	579.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	95894.0	NR_045489	69491.0	Mm.392410	NR_045489	ENSMUSG00000098144	1700029N11Rik	-	RIKEN cDNA 1700029N11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-47785354-2	chr6	47785254	47785454	+	693.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18298.0	NR_030485	735289.0		NR_030485	ENSMUSG00000076060	Mir704	Mirn704|mir-704|mmu-mir-704	microRNA 704	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-34037645-4	chr13	34037545	34037745	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026512)	promoter-TSS (NM_026512)	4.0	NM_026512	68021.0	Mm.140243	NM_026512	ENSMUSG00000038286	Bphl	2010012D11Rik|5730533B08Rik|AI115341	biphenyl hydrolase-like (serine hydrolase, breast epithelial mucin-associated antigen)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-128745981-2	chr7	128745876	128746076	+	852.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001029982, intron 1 of 18)	intron (NM_001029982, intron 1 of 18)	1106.0	NM_001029982	207352.0	Mm.297105	NM_001029982	ENSMUSG00000055319	Sec23ip	D7Ertd373e|p125	Sec23 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44863095-2	chr7	44862995	44863195	+	550.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_021549)	TTS (NM_021549)	5692.0	NM_001290767	59047.0	Mm.238254	NM_021549	ENSMUSG00000002963	Pnkp	1810009G08Rik|PNK	polynucleotide kinase 3'- phosphatase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-123918547-2	chr4	123918489	123918689	+	721.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_017475, intron 1 of 6)	intron (NM_017475, intron 1 of 6)	1156.0	NM_017475	54170.0	Mm.220922	NM_017475	ENSMUSG00000028646	Rragc	AU041672|Gtr2|RAGC|TIB929|YGR163W	Ras-related GTP binding C	protein-coding	0.246873984426792	0.753059537312207	0.259919207062304	0.87761627858999	0.627427233019885	0.267709338636027	0.261321205704636	0.682166357263073	-0.597811667309534	0.758040597118422	1
Merged-chr6-50560976-2	chr6	50560876	50561076	+	969.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5498.0	NM_007808	13063.0	Mm.35389	NM_007808	ENSMUSG00000063694	Cycs	-	cytochrome c, somatic	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-29092803-2	chr17	29092672	29092872	+	652.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007669)	promoter-TSS (NM_007669)	-997.0	NM_007669	12575.0	Mm.195663	NM_007669	ENSMUSG00000023067	Cdkn1a	CAP20|CDKI|CIP1|Cdkn1|P21|SDI1|Waf1|mda6|p21Cip1|p21WAF	cyclin-dependent kinase inhibitor 1A (P21)	protein-coding	1.18183588227592	0.296730697391334	1.74182358351452	0.274191232079057	0.259772598778014	0.299526010364784	0.286941817472125	0.684926447568676	-3.15412353176917	0.0988000677967932	0.488758884040376
Merged-chr6-51469399-4	chr6	51469319	51469519	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016806, intron 1 of 10)	CpG	475.0	NR_104468	53379.0	Mm.155896	NM_016806	ENSMUSG00000004980	Hnrnpa2b1	9130414A06Rik|Hnrpa2|Hnrpa2b1|hnrnp-A	heterogeneous nuclear ribonucleoprotein A2/B1	protein-coding	4.17689143658002	3.42181583957466	3.67888573631138	3.79620793051387	4.16598363426079	4.5703877120229	3.32887188259542	3.81526419194732	0.334704044469464	0.498136499534264	0.936897994490085
Merged-chr19-40998687-4	chr19	40998593	40998793	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4158.0	NM_008528	17060.0	Mm.9749	NM_008528	ENSMUSG00000061132	Blnk	BASH|Bca|Ly-57|Ly57|Lyw-57|SLP-65	B cell linker	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-90041779-4	chr7	90041680	90041880	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110364, intron 5 of 5)	intron (NR_110364, intron 5 of 5)	12621.0	NR_110364	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	5.72142519808177	5.73014006750364	5.12404251383672	5.70366601085103	5.8128952672766	5.70967259056762	5.16014325000405	5.81347657250578	0.0659930934907423	0.811686384259044	0.998431161219273
Merged-chr2-11534981-4	chr2	11534861	11535061	+	877.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177758, intron 1 of 14)	intron (NM_001177758, intron 1 of 14)	18968.0	NM_001177758	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-97312267-2	chr7	97312167	97312367	+	678.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001177412, exon 9 of 10)	exon (NM_001177412, exon 9 of 10)	13697.0	NM_001177412	244144.0	Mm.297541	NM_001177412	ENSMUSG00000035713	Usp35	Gm1088|Gm493	ubiquitin specific peptidase 35	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-186580448-2	chr1	186580348	186580548	+	570.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21767.0	NR_131158	320449.0	Mm.404477	NR_131124	ENSMUSG00000103690	A730004F24Rik	-	RIKEN cDNA A730004F24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-49306946-4	chr13	49306843	49307043	+	972.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015759, intron 1 of 17)	intron (NM_015759, intron 1 of 17)	2265.0	NM_015759	30938.0	Mm.291089	NM_015759	ENSMUSG00000037946	Fgd3	5830461L01Rik|ZFYVE5	FYVE, RhoGEF and PH domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-90482872-4	chr7	90482773	90482973	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6878.0	NM_026734	68472.0	Mm.289791	NM_026734	ENSMUSG00000030614	Tmem126b	1110001A23Rik	transmembrane protein 126B	protein-coding	3.90856804271902	3.65238916773608	3.61987490219084	4.0581942008675	4.76825467111263	5.01066467539761	5.40655160089326	5.21595820339694	1.62839013712155	1.92898350320607e-05	0.000787208982022667
Merged-chr11-115047927-1	chr11	115047827	115048027	+	619.0	f0_balb.idr	intron (NM_199201, intron 1 of 3).2	ID_B1|SINE|B4	368.0	NM_199201	382551.0	Mm.424732	NM_199201	ENSMUSG00000069607	Cd300ld3	AY457049|Cd300lh|Clm3|Lmir7|clm-3	CD300 molecule like family member D3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-17599550-1	chr6	17599450	17599650	+	540.0	f1_c57bl6.idr	Intergenic	Intergenic	-37460.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-65433380-2	chr6	65433280	65433480	+	644.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175524, intron 1 of 5)	intron (NM_175524, intron 1 of 5)	52086.0	NM_175524	243407.0	Mm.389758	NM_175524	ENSMUSG00000029917	C130060K24Rik	-	RIKEN cDNA C130060K24 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-75835650-4	chr15	75835563	75835763	+	980.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172121, intron 3 of 11)	intron (NM_172121, intron 3 of 11)	6245.0	NM_172121	223642.0	Mm.209800	NM_172121	ENSMUSG00000075600	Zc3h3	BC049953|Kiaa0150|Smicl|Zc3hdc3	zinc finger CCCH type containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-55752598-4	chr17	55752499	55752699	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139138, intron 1 of 16)	intron (NM_139138, intron 1 of 16)	2615.0	NM_139138	52614.0	Mm.210497	NM_139138	ENSMUSG00000032915	Adgre4	D17Ertd479e|Egf-tm7|Emr4|Fire|Gpr127	adhesion G protein-coupled receptor E4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-44410686-4	chr11	44410584	44410784	+	747.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303244, intron 5 of 7)	intron (NM_001303244, intron 5 of 7)	10621.0	NM_001303244	16160.0	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-179990350-2	chr2	179990250	179990450	+	870.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	13497.0	NR_033782	66730.0	Mm.31773	NR_033782	ENSMUSG00000085704	4921531C22Rik	-	RIKEN cDNA 4921531C22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67539925-2	chr10	67539825	67540025	+	843.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_010118, exon 2 of 2)	exon (NM_010118, exon 2 of 2)	1995.0	NM_001347458	13654.0	Mm.290421	NM_010118	ENSMUSG00000037868	Egr2	Egr-2|Krox-20|Krox20|NGF1-B|Zfp-25|Zfp-6	early growth response 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-84178260-2	chr12	84178160	84178360	+	829.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163501, intron 1 of 12)	intron (NM_001163501, intron 1 of 12)	15755.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167492413-4	chr2	167492316	167492516	+	999.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030743)	promoter-TSS (NM_030743)	-229.0	NM_030743	81018.0	Mm.22225	NM_030743	ENSMUSG00000006418	Rnf114	1110008J21Rik|AI225886|AW549494|Zfp228|Zfp313|Znf228	ring finger protein 114	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167701650-4	chr2	167701552	167701752	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10475.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-29618377-2	chr6	29618277	29618477	+	573.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-8528.0	NM_001347079	320938.0	Mm.276381	NM_177296	ENSMUSG00000012535	Tnpo3	5730544L10Rik|C430013M08Rik|C81142|D6Ertd313e|Trn-SR|mKIAA4133	transportin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-3149661-4	chr17	3149580	3149780	+	836.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134123, intron 3 of 19)	MTC|LTR|ERVL-MaLR	34708.0	NM_134123	106583.0	Mm.124373	NM_134123	ENSMUSG00000046201	Scaf8	A630086M08Rik|A930036P18Rik|AA408306|AI447644|AI448652|AU015035|Rbm16|mKIAA1116	SR-related CTD-associated factor 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-22226554-4	chr9	22226479	22226679	+	846.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028420, intron 1 of 4)	B2_Mm2|SINE|B2	867.0	NM_001164624	235047.0	Mm.290849	NM_172763	ENSMUSG00000057982	Zfp809	BB114266|C330026E23	zinc finger protein 809	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-88404324-4	chr9	88404205	88404405	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172926, exon 12 of 28)	exon (NM_172926, exon 12 of 28)	34646.0	NM_001359958	244962.0	Mm.439873	NM_172926	ENSMUSG00000032422	Snx14	B830022K16|C330035N22Rik|YR-14	sorting nexin 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-60664917-1	chr13	60664817	60665017	+	634.0	f1_balb.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	62706.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-107582471-2	chr1	107582371	107582571	+	619.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR10_RN|LTR|ERVK	-7535.0	NM_011459	20725.0	Mm.83909	NM_011459	ENSMUSG00000026315	Serpinb8	CAP-2|CAP2|NK10|Spi8|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100378663-4	chr11	100378562	100378762	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010593, intron 7 of 13)	intron (NM_010593, intron 7 of 13)	19128.0	NM_010593	16480.0	Mm.299774	NM_010593	ENSMUSG00000001552	Jup	Ctnng|D930025P04Rik|PG	junction plakoglobin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-68692156-3	chr18	68692066	68692266	+	952.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	-47234.0	NR_105774	102465183.0		NR_105774	ENSMUSG00000099300	Mir6356	Gm27461|mmu-mir-6356	microRNA 6356	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-40225824-2	chr12	40225724	40225924	+	712.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045157, intron 2 of 2)	intron (NR_045157, intron 2 of 2)	2460.0	NR_045157	629820.0	Mm.435540	NR_045157	ENSMUSG00000035983	Gm7008	EG629820	predicted gene 7008	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-87858214-4	chr10	87858133	87858333	+	877.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010512)	promoter-TSS (NM_010512)	-32.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122949260-2	chr5	122949160	122949360	+	607.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001003953, intron 6 of 22)	intron (NM_001003953, intron 6 of 22)	39839.0	NM_001003953	30841.0	Mm.86406	NM_013910	ENSMUSG00000029475	Kdm2b	Cxxc2|Fbl10|Fbxl10|Jhdm1b|PCCX2	lysine (K)-specific demethylase 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55557242-4	chr14	55557197	55557397	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2732.0	NR_037572	28199.0	Mm.11535	NM_133734	ENSMUSG00000022214	Dcaf11	0710008A13Rik|C76035|D14Ucla1|Dacf11|GLO14|Wdr23	DDB1 and CUL4 associated factor 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-87411305-2	chr3	87411188	87411388	+	567.0	f0_c57.idr|f1_balb.idr	Intergenic	Intergenic	-24494.0	NM_001113238	329693.0	Mm.331122	NM_183222	ENSMUSG00000048031	Fcrl5	Fcrh3|mBXMH2	Fc receptor-like 5	protein-coding	-0.991597071560028	-1.11266276692436	-1.12372915630895	-1.13234486067054	-1.13506748179545	-1.11026463418018	-1.12122396832063	-0.590291635890923	1.70329920231503	0.601976331032042	1
Merged-chr16-21719893-4	chr16	21719815	21720015	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25250.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-84582014-4	chr1	84581937	84582137	+	956.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152915, intron 3 of 12)	intron (NM_152915, intron 3 of 12)	-113802.0	NR_039588	100628595.0		NR_039588	ENSMUSG00000093254	Mir5126	mir-5126|mmu-mir-5126|mu-mir-5126	microRNA 5126	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47790785-2	chr17	47790685	47790885	+	708.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161722, intron 8 of 8)	intron (NM_001161722, intron 8 of 8)	5041.0	NM_011549	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-19415211-4	chr2	19415106	19415306	+	988.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30457.0	NM_018809	19213.0	Mm.69647	NM_018809	ENSMUSG00000026735	Ptf1a	PTF1-p48|PTF1p48|bHLHa29	pancreas specific transcription factor, 1a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-67841673-2	chr5	67841573	67841773	+	975.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038999, intron 1 of 36)	intron (NM_001038999, intron 1 of 36)	5758.0	NM_009727	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-90717038-2	chr6	90716938	90717138	+	654.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001134383)	promoter-TSS (NM_001134383)	-509.0	NM_001134383	232227.0	Mm.196943	NM_182784	ENSMUSG00000034312	Iqsec1	AW561907|BC026481|BRAG2|D6Ertd349e|cI-43	IQ motif and Sec7 domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95499117-2	chr3	95499017	95499217	+	794.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007802)	promoter-TSS (NM_007802)	-93.0	NM_007802	13038.0	Mm.272085	NM_007802	ENSMUSG00000028111	Ctsk	AI323530|MMS10-Q|Ms10q|catK	cathepsin K	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-157417433-2	chr2	157417333	157417533	+	739.875	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6860.0	NM_009271	20779.0	Mm.22845	NM_009271	ENSMUSG00000027646	Src	AW259666|pp60c-src	Rous sarcoma oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-13563679-4	chr9	13563574	13563774	+	932.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56315.0	NM_001013813	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-94258933-4	chr16	94258832	94259032	+	669.775024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360045, intron 5 of 10)	intron (NM_001360045, intron 5 of 10)	31359.0	NM_001360045	110948.0	Mm.30921	NM_139145	ENSMUSG00000040820	Hlcs	410I21.SP6|D16Jhu34	holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-88601432-4	chr5	88601329	88601529	+	950.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289777, intron 3 of 14)	Tigger7|DNA|TcMar-Tigger	17916.0	NM_001359209	52822.0	Mm.270469	NM_027530	ENSMUSG00000029291	Rufy3	2810428M05Rik|6330416M07Rik|AW455998|AW538594|D5Bwg0860e|Ripx|Rpipx	RUN and FYVE domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91876972-2	chr2	91876872	91877072	+	871.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080754, intron 13 of 18)	intron (NM_001080754, intron 13 of 18)	-45217.0	NM_007699	12672.0	Mm.330405	NM_007699	ENSMUSG00000040495	Chrm4	Chrm-4|M4	cholinergic receptor, muscarinic 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-79946925-2	chr15	79946833	79947033	+	813.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14287.0	NM_144811	52609.0	Mm.323442	NM_144811	ENSMUSG00000053411	Cbx7	1600014J01Rik|AI851678|D15Ertd417e	chromobox 7	protein-coding	0.864647242368286	1.79377994916701	0.902606410991192	1.95491812440156	1.48163812256963	0.924286961116462	1.84948835385216	1.56387195818727	0.027661145868757	0.983695975816879	0.998431161219273
Merged-chr19-5677272-2	chr19	5677172	5677372	+	723.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_144868, exon 20 of 35)	exon (NM_144868, exon 20 of 35)	1804.0	NR_105953	102465596.0		NR_105953	ENSMUSG00000098568	Mir6987	Gm27891|mmu-mir-6987	microRNA 6987	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-84754377-2	chr6	84754277	84754477	+	685.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177077, intron 19 of 21)	intron (NM_177077, intron 19 of 21)	-160469.0	NM_001177713	232174.0	Mm.255246	NM_175475	ENSMUSG00000063415	Cyp26b1	CP26|P450RAI-2	cytochrome P450, family 26, subfamily b, polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-35625874-4	chr8	35625797	35625997	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081279, intron 1 of 2)	intron (NM_001081279, intron 1 of 2)	-36877.0	NR_040376	100504714.0	Mm.381744	NR_040376	ENSMUSG00000097357	Gm16793	-	predicted gene, 16793	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-29306804-3	chr7	29306726	29306926	+	855.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013874, intron 1 of 11)	intron (NM_013874, intron 1 of 11)	2821.0	NM_013874	29861.0	Mm.101885	NM_013874	ENSMUSG00000030584	Dpf1	Neud4	D4, zinc and double PHD fingers family 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-68999506-4	chr8	68999421	68999621	+	847.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-89215.0	NM_007509	11966.0	Mm.249096	NM_007509	ENSMUSG00000006273	Atp6v1b2	AI194269|AI790362|Atp6b2|HO57|R74844	ATPase, H+ transporting, lysosomal V1 subunit B2	protein-coding	3.84877104569588	3.17075459259204	2.65451087543822	3.93957962295915	3.21358700695185	3.68191726844797	3.64002835274361	3.29001784593852	-0.0748116693899431	0.896437168647251	0.998431161219273
Merged-chr15-78309992-2	chr15	78309892	78310092	+	609.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4271.0	NM_001287389	12984.0	Mm.1940	NM_007781	ENSMUSG00000071714	Csf2rb2	AIC2A|BetaIl3|Bil3|Csfgmrb|Il3r|Il3rb|Il3rb2	colony stimulating factor 2 receptor, beta 2, low-affinity (granulocyte-macrophage)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-38105687-4	chr3	38105592	38105792	+	901.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	102427.0	NR_040541	71342.0	Mm.410782	NR_040541	ENSMUSG00000106002	5430434I15Rik	-	RIKEN cDNA 5430434I15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-37419305-4	chr6	37419208	37419408	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178661, intron 1 of 11)	intron (NM_178661, intron 1 of 11)	22840.0	NM_178661	208647.0	Mm.169929	NM_178661	ENSMUSG00000038648	Creb3l2	BBF2H7|C530025K05Rik|SCIRR69	cAMP responsive element binding protein 3-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-38599581-2	chr18	38599481	38599681	+	702.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011898, intron 1 of 1)	intron (NM_011898, intron 1 of 1)	1687.0	NM_011898	24066.0	Mm.42038	NM_011898	ENSMUSG00000024427	Spry4	A030006O18Rik|sprouty4	sprouty RTK signaling antagonist 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-117615513-2	chr13	117615413	117615613	+	750.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010408, intron 1 of 7)	Lx7|LINE|L1	13193.0	NM_010408	15165.0	Mm.343429	NM_010408	ENSMUSG00000021730	Hcn1	Bcng1|C630013B14Rik|HAC2	hyperpolarization-activated, cyclic nucleotide-gated K+ 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-3401488-2	chr13	3401388	3401588	+	990.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	-76815.0	NR_015522	76937.0	Mm.487240	NR_015522	ENSMUSG00000097709	2810429I04Rik	AI256682	RIKEN cDNA 2810429I04 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-108855567-4	chr3	108855429	108855629	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177091, exon 13 of 13)	3' UTR (NM_177091, exon 13 of 13)	-15027.0	NM_011504	20912.0	Mm.316894	NM_011504	ENSMUSG00000027882	Stxbp3	Munc-18c|Stxbp3a|Sxtbp3|Unc18-3	syntaxin binding protein 3	protein-coding	6.05296668155303	5.98831570218733	6.12795323803525	5.49619360155458	5.29229704500354	5.74714015523373	5.27601320241379	5.41172077607974	-0.558969642056102	0.0346602392396925	0.263333405189828
Merged-chr1-16519877-4	chr1	16519752	16519952	+	921.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025303)	promoter-TSS (NM_025303)	-550.0	NM_001347045	29819.0	Mm.216257	NM_025303	ENSMUSG00000025920	Stau2	-	staufen double-stranded RNA binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-22452415-2	chr6	22452315	22452515	+	711.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-96334.0	NM_138587	27999.0	Mm.490307	NM_138587	ENSMUSG00000029672	Fam3c	D6Wsu176e|Ilei	family with sequence similarity 3, member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-115823712-1	chr4	115823612	115823812	+	1000.0	f1_c57bl6.idr	Intergenic	Intergenic	-4380.0	NM_175308	100465.0	Mm.35571	NM_175308	ENSMUSG00000028709	Mob3c	AW822253|D130076I06Rik|Mobkl2c	MOB kinase activator 3C	protein-coding	3.36953402896276	3.86486630875793	2.68044337265224	2.35001920793894	1.93546328163495	2.53828159377821	1.38348718451532	2.04709611915279	-2.26118418578112	0.00619923751871066	0.0784031466087391
Merged-chr6-4748726-2	chr6	4748626	4748826	+	654.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001040611, intron 1 of 1)	intron (NM_001040611, intron 1 of 1)	1420.0	NM_130877	170676.0	Mm.320575	NM_130877	ENSMUSG00000092035	Peg10	AA407948|Edr|HB-1|MEF3L|Mar2|Mart2|MyEF-3|Rtl2	paternally expressed 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-87530646-4	chr17	87530659	87530859	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-83824.0	NM_007589	12314.0	Mm.329243	NM_007589	ENSMUSG00000036438	Calm2	1500001E21Rik|AL024017|Cam2|CamC	calmodulin 2	protein-coding	2.36226425881414	1.8580201987089	3.67976117067879	0.964135751060162	1.42532770881181	1.0531841318349	3.03610616210806	0.970550239387261	-1.22133808067468	0.543582858109202	0.955585568541497
Merged-chr17-47009112-3	chr17	47008985	47009185	+	769.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146078, intron 1 of 46)	intron (NM_146078, intron 1 of 46)	1447.0	NM_146078	224826.0	Mm.28234	NM_146078	ENSMUSG00000023977	Ubr2	9930021A08Rik|AI462103|AW540746|E130209G04Rik|mKIAA0349	ubiquitin protein ligase E3 component n-recognin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-102894863-4	chr2	102894791	102894991	+	831.4345089999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039150, intron 1 of 13)	intron (NM_001039150, intron 1 of 13)	6774.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-120502713-2	chr5	120502613	120502813	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023625, intron 1 of 11)	intron (NM_023625, intron 1 of 11)	910.0	NM_023625	71772.0	Mm.100065	NM_023625	ENSMUSG00000029598	Plbd2	1300012G16Rik|AU019810|P76	phospholipase B domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-91068028-3	chr1	91067935	91068135	+	562.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008515, intron 1 of 22)	Tigger7|DNA|TcMar-Tigger	14591.0	NM_001310732	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-43510127-1	chr19	43510027	43510227	+	668.5	f1_balb.idr	intron (NM_010324, intron 2 of 8)	B3A|SINE|B2	14478.0	NM_010324	14718.0	Mm.19039	NM_010324	ENSMUSG00000025190	Got1	AI789014|Got-1|cAspAT|cCAT	glutamic-oxaloacetic transaminase 1, soluble	protein-coding	-1.43172712806865	-1.3992492906874	-1.40907085678131	-1.41713858359971	-0.932192548427885	-1.39712091634321	-1.40684746950024	-1.41569446435649	2.19283191591698	0.528233640655333	1
Merged-chr9-14846891-4	chr9	14846765	14846965	+	935.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13345.0	NM_001310734	14608.0	Mm.4672	NM_010287	ENSMUSG00000031932	Gpr83	AW045253|Gir|Gpr72|RP105|RP39|RP82	G protein-coupled receptor 83	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80446431-4	chr10	80446344	80446544	+	857.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12791.0	NM_001164148	21423.0	Mm.3406	NM_011548	ENSMUSG00000020167	Tcf3	A1|AA408400|ALF2|AW209082|E12|E12/E47|E2A|E47|KA1|ME2|Pan1|Pan2|TCF-3|Tcfe2a|VDIR|bHLHb21	transcription factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-37195205-4	chr10	37195111	37195311	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56285.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-21531024-4	chr13	21530825	21531025	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001251834, intron 1 of 1)	CpG	189.0	NM_139141	93681.0	Mm.290601	NM_139141	ENSMUSG00000063894	Zkscan8	2510038J07Rik|D430019P06Rik|LD5-1|Zfp192	zinc finger with KRAB and SCAN domains 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141571425-1	chr4	141571325	141571525	+	605.0	f0_balb.idr	Intergenic	Intergenic	25263.0	NR_030695	320456.0	Mm.32859	NM_177163		B330016D10Rik	-	RIKEN cDNA B330016D10 gene	ncRNA	0.622201265460093	0.730416337942104	0.445070940088315	1.02552459939014	0.413278779546108	2.15374753166368	1.08339121372292	0.434435679455838	1.96206152755916	0.210526490834315	0.699823652668115
Merged-chr12-111447746-2	chr12	111447646	111447846	+	564.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009396, intron 3 of 11)	intron (NM_009396, intron 3 of 11)	5085.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33744862-3	chr16	33744759	33744959	+	947.2666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175256, intron 10 of 14)	intron (NM_175256, intron 10 of 14)	-49178.0	NM_010739	17063.0	Mm.3177	NM_010739	ENSMUSG00000022824	Muc13	114/A10|14/A10|AI159736|Lrrp|Ly64|NJ-1	mucin 13, epithelial transmembrane	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-15705919-2	chr9	15705819	15706019	+	980.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17B|LTR|ERVK	-3819.0	NM_001357566	234967.0	Mm.138815	NM_172289	ENSMUSG00000043885	Slc36a4	6330573I15Rik|PAT4	solute carrier family 36 (proton/amino acid symporter), member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123013768-4	chr5	123013670	123013870	+	845.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1304.0	NM_175423	109305.0	Mm.218582	NM_175423	ENSMUSG00000049686	Orai1	D730049H07Rik|Tmem142a|orai-1	ORAI calcium release-activated calcium modulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-26657465-3	chr2	26657360	26657560	+	889.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13822.0	NM_010695	16821.0	Mm.123925	NM_010695	ENSMUSG00000026919	Lcn4	A630045M08Rik|Vnsp2	lipocalin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-9538794-4	chr18	9538708	9538908	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	80661.0	NM_007593	26369.0	Mm.195831	NM_007593	ENSMUSG00000050996	Cetn1	caltractin	centrin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102320103-4	chr12	102319973	102320173	+	773.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177620, intron 2 of 9)	ORR1E|LTR|ERVL-MaLR	36432.0	NM_001161365	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	3.73934975408307	2.22008939712626	2.51568065951411	3.82902659505977	3.17454898239357	3.28988579489073	1.91187376012908	4.16502324273522	0.145678746966243	0.845060136674924	0.998431161219273
Merged-chr9-106411370-3	chr9	106411285	106411485	+	836.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18026.0	NM_001324533	19944.0	Mm.288696	NM_009082	ENSMUSG00000048758	Rpl29	Rpl43	ribosomal protein L29	protein-coding	2.58804814279491	1.75762564402549	2.61365738091446	2.54037243712906	3.01695760899007	2.48433102952804	2.73424476755778	1.67070426834108	0.31704471062334	0.706853596815891	0.998431161219273
Merged-chr6-38951077-4	chr6	38950976	38951176	+	871.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 2 of 12)	intron (NM_011539, intron 2 of 12)	32090.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-96642605-7	chr15	96642574	96642774	+	956.285706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134086)	promoter-TSS (NM_134086)	239.0	NM_001166458	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-28071964-4	chr5	28071872	28072072	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153526, intron 1 of 4)	intron (NM_153526, intron 1 of 4)	560.0	NM_153526	231070.0	Mm.30221	NM_153526	ENSMUSG00000045294	Insig1	1810013C12Rik|Insig-1	insulin induced gene 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-50325745-4	chr11	50325629	50325829	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007597)	promoter-TSS (NM_007597)	-56.0	NM_001110500	12330.0	Mm.248827	NM_007597	ENSMUSG00000020368	Canx	1110069N15Rik|AI988026|Cnx|D11Ertd153e	calnexin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-156324876-3	chr2	156324778	156324978	+	869.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027585, intron 2 of 12)	RMER21B|LTR|ERV1	-12174.0	NM_020255	19018.0	Mm.389346	NM_020255	ENSMUSG00000046229	Scand1	2310003H23Rik|Leap1|PGC-2|Ppargc2	SCAN domain-containing 1	protein-coding	2.02038158257982	2.19806124868766	1.25421744536798	2.49995584615181	0.968409030708903	1.51700688463955	1.63653568411217	0.997905681203588	-2.37938852688506	0.0464653311286443	0.311331557826587
Merged-chr19-47174609-2	chr19	47174480	47174680	+	811.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4240.0	NM_021360	18011.0	Mm.313651	NM_021360	ENSMUSG00000006435	Neurl1a	2410129E16Rik|AI450910|AI481072|Neu1|Neur1|Neurl|Neurl1|Nlz|Rnf67	neuralized E3 ubiquitin protein ligase 1A	protein-coding	-0.312295987989764	-0.657280564810244	-0.660318547355482	-0.507288864181962	-0.66593298747914	-0.65659362701666	-0.219202113352979	-0.662244852962315	-0.0780407908893603	0.977344520446777	1
Merged-chr19-7206257-5	chr19	7206084	7206284	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134150)	promoter-TSS (NM_134150)	100.0	NM_134150	107260.0	Mm.203921	NM_134150	ENSMUSG00000024767	Otub1	AI850305	OTU domain, ubiquitin aldehyde binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72393311-2	chr6	72393211	72393411	+	662.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-2644.0	NM_016794	22320.0	Mm.1838	NM_016794	ENSMUSG00000050732	Vamp8	AU041171|Edb|endobrevin	vesicle-associated membrane protein 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-43500304-4	chr1	43500214	43500414	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010879, intron 1 of 4)	intron (NM_010879, intron 1 of 4)	54563.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-89363923-2	chr6	89363823	89364023	+	582.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-1310.0	NM_008881	18844.0	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-34402922-2	chr19	34402829	34403029	+	785.75	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	72206.0	NM_009890	12642.0	Mm.30824	NM_009890	ENSMUSG00000050370	Ch25h	AI462618|m25OH	cholesterol 25-hydroxylase	protein-coding	-0.430717377846592	-0.417600254477245	-0.421893808252119	-0.425208932773273	0.0632573539197898	-0.416632924157884	-0.420946519879507	0.316322807491112	3.65315183181047	0.165233652593236	1
Merged-chr15-79504780-2	chr15	79504680	79504880	+	695.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008427, intron 1 of 1)	intron (NM_008427, intron 1 of 1)	461.0	NM_008427	16520.0	Mm.39759	NM_008427	ENSMUSG00000044216	Kcnj4	IRK3|Kcnf2|MB-IRK3	potassium inwardly-rectifying channel, subfamily J, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-116182322-4	chr9	116182218	116182418	+	966.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-6862.0	NR_152204	100043817.0	Mm.404276	NR_152204		Gm4668	-	predicted gene 4668	ncRNA	-1.05601938687352	-1.03616289853851	-1.04761128607814	-1.05268737851486	-0.486446083004129	-1.03368198520059	-1.04501962208068	-0.885296780652757	2.81377842780703	0.373656442218667	1
Merged-chr17-25681827-4	chr17	25681686	25681886	+	965.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35386.0	NM_022422	64337.0	Mm.171123	NM_022422	ENSMUSG00000025739	Gng13	1500031D04Rik|AB030194|Ggamma13	guanine nucleotide binding protein (G protein), gamma 13	protein-coding	2.76909357708752	2.22236726009652	3.19551002706044	3.01739366926829	3.59970940265845	3.49645445611851	2.35634318756614	3.35581950771086	0.749506167076939	0.263530388555835	0.76534529437592
Merged-chr12-71933815-2	chr12	71933715	71933915	+	853.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026102, intron 3 of 25)	intron (NM_026102, intron 3 of 25)	44272.0	NM_001286452	208846.0	Mm.87417	NM_026102	ENSMUSG00000034574	Daam1	-	dishevelled associated activator of morphogenesis 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4119044-2	chr19	4118944	4119144	+	700.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_016666, intron 2 of 6)	L2b|LINE|L2	2531.0	NM_001276284	11632.0	Mm.10433	NM_016666	ENSMUSG00000024847	Aip	AA408703|AW476050|Ara9|D19Bwg1412e|Fkbp16|Xap2	aryl-hydrocarbon receptor-interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-109444247-1	chr3	109444147	109444347	+	902.0	f1_c57bl6.idr	intron (NM_020505, intron 2 of 26)	intron (NM_020505, intron 2 of 26)	103564.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	2.89488941367988	2.7831893822535	1.90591873027761	1.25001387758356	2.14277873852732	1.98743642138938	1.74348725715115	2.00905768807201	-0.958490055841935	0.326163145065139	0.828154362547589
Merged-chr2-167251689-2	chr2	167251589	167251789	+	736.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11152.0	NM_008968	19223.0	Mm.2339	NM_008968	ENSMUSG00000017969	Ptgis	Cyp8|Cyp8a1|Pgis	prostaglandin I2 (prostacyclin) synthase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3388806-4	chr19	3388726	3388926	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039658)	promoter-TSS (NM_001039658)	-31.0	NM_001039658	17771.0	Mm.209941	NM_010841	ENSMUSG00000024905	Tesmin	Mtl5	testis expressed metallothionein like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119409823-2	chr11	119409723	119409923	+	553.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19351.0	NR_035453	100316690.0		NR_035453	ENSMUSG00000088015	Mir1932	mir-1932|mmu-mir-1932	microRNA 1932	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-68056608-4	chr3	68056641	68056841	+	850.4874880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_177585)	TTS (NM_177585)	-8061.0	NM_001113420	30953.0	Mm.331064	NM_013928	ENSMUSG00000027777	Schip1	Nf2ip|Schip-1	schwannomin interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-102545195-2	chr9	102545095	102545295	+	987.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_024291, exon 11 of 11)	3' UTR (NM_024291, exon 11 of 11)	39057.0	NM_024291	16716.0	Mm.101692	NM_024291	ENSMUSG00000035606	Ky	CD1|D9Mgc44e|ky	kyphoscoliosis peptidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-58730946-2	chr15	58730846	58731046	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	92481.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-21045815-4	chr19	21045694	21045894	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58916.0	NR_126458	75354.0	Mm.243873	NR_126458		4930554I06Rik	-	RIKEN cDNA 4930554I06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-10481618-2	chr16	10481518	10481718	+	695.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001243760, intron 1 of 18)	intron (NM_001243760, intron 1 of 18)	1546.0	NM_001302618	12265.0	Mm.249560	NM_007575	ENSMUSG00000022504	Ciita	C2ta|EG669998|Gm9475|Mhc2ta	class II transactivator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-51520871-4	chr6	51520758	51520958	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	-3045.0	NM_001361582	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-3027722-4	chr9	3027605	3027805	+	937.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GSAT_MM|Satellite|Satellite	11038.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-135957933-2	chr2	135957833	135958033	+	670.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355156, intron 16 of 37)	intron (NM_001355156, intron 16 of 37)	-94406.0	NM_001356548	76161.0	Mm.41638	NM_029530	ENSMUSG00000027270	Lamp5	3110035N03Rik|6330527O06Rik|BAD-LAMP|LAMP-5	lysosomal-associated membrane protein family, member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-9848370-3	chr1	9848280	9848480	+	807.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001037759)	promoter-TSS (NM_001037759)	99.0	NM_001037759	170755.0	Mm.336410	NM_133220	ENSMUSG00000025915	Sgk3	2510015P22Rik|A330005P07Rik|Cisk|fy|fz	serum/glucocorticoid regulated kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-116725454-4	chr6	116725357	116725557	+	876.258301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8699.0	NM_178768	319776.0	Mm.133120	NM_178768	ENSMUSG00000048108	Tmem72	C230095G01Rik	transmembrane protein 72	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-26699409-1	chr8	26699309	26699509	+	756.0	f1_c57bl6.idr	Intergenic	Intergenic	125014.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	1.73298325225908	2.85406848459266	0.956195278128075	2.06413058809358	1.86067370084467	0.989128719301002	0.962255970959304	1.57127201580814	-1.79806252188557	0.143049561710587	0.5904731564462
Merged-chr14-103815746-3	chr14	103815643	103815843	+	973.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007904, exon 7 of 7)	3' UTR (NM_007904, exon 7 of 7)	27958.0	NM_007904	13618.0	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-104244004-4	chr9	104243889	104244089	+	857.0750119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359740, intron 2 of 56)	intron (NM_001359740, intron 2 of 56)	18941.0	NM_001359740	235567.0	Mm.217256	NM_001163026	ENSMUSG00000032560	Dnajc13	D030002L11Rik|Gm1124|RME-8|Rme8|mKIAA0678	DnaJ heat shock protein family (Hsp40) member C13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-20968851-6	chr2	20968732	20968932	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033225)	promoter-TSS (NR_033225)	-42.0	NR_033225	433408.0	Mm.386941	NR_033225		Gm13375	-	predicted gene 13375	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-15269730-4	chr4	15269581	15269781	+	952.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181401, intron 1 of 2)	intron (NM_181401, intron 1 of 2)	3861.0	NM_181401	100201.0	Mm.394111	NM_181401	ENSMUSG00000043252	Tmem64	9630015D15Rik|AI790744|AV300874	transmembrane protein 64	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28069626-2	chr17	28069526	28069726	+	720.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_013687, exon 7 of 10)	exon (NM_013687, exon 7 of 10)	10958.0	NM_001357681	21463.0	Mm.29758	NM_013687	ENSMUSG00000062859	Tcp11	D17Ken1|Tcp-11	t-complex protein 11	protein-coding	-1.52696403314699	-1.49523967873556	-1.5048333853602	-1.51271394162622	-1.52473704212565	-1.49316068248889	-1.50266158046844	-1.06847079017215	2.01069003169785	0.564432837776867	1
Merged-chr19-40746444-2	chr19	40746344	40746544	+	680.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-84835.0	NM_172839	240665.0	Mm.309	NM_172839	ENSMUSG00000025010	Ccnj	D430039C20Rik	cyclin J	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-39008203-2	chr6	39008103	39008303	+	592.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 5 of 12)	ORR1E|LTR|ERVL-MaLR	59383.0	NR_040523	69986.0	Mm.490941	NR_040523	ENSMUSG00000100121	1700025N23Rik	-	RIKEN cDNA 1700025N23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-134915687-2	chr4	134915587	134915787	+	749.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027935)	promoter-TSS (NM_027935)	-771.0	NM_027935	71817.0	Mm.88349	NM_027935	ENSMUSG00000028822	Tmem50a	3200001F09Rik|CAM|Smp1	transmembrane protein 50A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-94560123-2	chr13	94560023	94560223	+	680.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_009680, intron 26 of 26)	intron (NM_009680, intron 26 of 26)	201163.0	NM_009680	11774.0	Mm.21185	NM_009680	ENSMUSG00000021686	Ap3b1	AP-3|AU015684|C78395|Hps2|beta3A|pe|pearl|rim2	adaptor-related protein complex 3, beta 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141790064-2	chr4	141790006	141790206	+	803.416626	f0_balb.idr|f1_c57bl6.idr	intron (NM_172338, intron 1 of 14)	intron (NM_172338, intron 1 of 14)	538.0	NM_172338	214063.0	Mm.39102	NM_172338	ENSMUSG00000040697	Dnajc16	2900037O03Rik|4732437J24Rik|D030060M24|mKIAA0962	DnaJ heat shock protein family (Hsp40) member C16	protein-coding	2.32029106775392	1.42808577292153	3.30982681665842	3.15393772786663	3.01679190160984	2.18232780051541	2.96584384189218	1.35112203927985	-0.380467726859969	0.68662601603436	0.996533206832645
Merged-chr12-111456515-2	chr12	111456415	111456615	+	552.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13854.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-51312215-4	chr2	51312142	51312342	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	70411.0	NR_040636	329404.0	Mm.417725	NR_040636	ENSMUSG00000086349	Gm13497	A730015I17	predicted gene 13497	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-158168584-2	chr2	158168484	158168684	+	871.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22192.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-19706634-4	chr14	19706559	19706759	+	918.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44598.0	NM_008695	18074.0	Mm.20348	NM_008695	ENSMUSG00000021806	Nid2	AW547149|Ly111|NID-2|entactin-2|nidogen-2	nidogen 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-136625520-5	chr1	136625436	136625636	+	877.4400019999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177643, exon 2 of 2)	exon (NM_177643, exon 2 of 2)	635.0	NM_001160251	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-34119619-2	chr16	34119519	34119719	+	679.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177357, intron 33 of 59)	intron (NM_177357, intron 33 of 59)	-152581.0	NM_009471	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-80466315-2	chr18	80466215	80466415	+	826.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026295, intron 1 of 12)	intron (NM_026295, intron 1 of 12)	3352.0	NM_026295	67655.0	Mm.312893	NM_026295	ENSMUSG00000033323	Ctdp1	4930563P03Rik|AW553592	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-32224627-2	chr18	32224527	32224727	+	674.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011946, intron 15 of 16)	PB1|SINE|Alu	-15704.0	NM_133658	13872.0	Mm.282335	NM_133658	ENSMUSG00000024382	Ercc3	BTF2 p89|Ercc-3|XPB	excision repair cross-complementing rodent repair deficiency, complementation group 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3360097-4	chr19	3360032	3360232	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013495, intron 5 of 18)	PB1D11|SINE|Alu	-28725.0	NM_001039658	17771.0	Mm.209941	NM_010841	ENSMUSG00000024905	Tesmin	Mtl5	testis expressed metallothionein like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-52767495-4	chr3	52767379	52767579	+	951.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038079, intron 1 of 3)	intron (NR_038079, intron 1 of 3)	27755.0	NR_038079	329639.0	Mm.131245	NR_038079	ENSMUSG00000102785	Gm2447	100039832|A530017F20	predicted gene 2447	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-49780355-2	chr7	49780255	49780455	+	710.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_133740, exon 3 of 16)	exon (NM_133740, exon 3 of 16)	1997.0	NM_133740	71974.0	Mm.33202	NM_133740	ENSMUSG00000030505	Prmt3	2010005E20Rik|2410018A17Rik|AL033309|Hrmt1l3	protein arginine N-methyltransferase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-29494739-7	chr17	29494712	29494912	+	951.5476070000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008842, exon 6 of 6)	3' UTR (NM_008842, exon 6 of 6)	3767.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	3.5014408686437	2.29645296470537	2.21476113539295	2.45473779366132	3.70028528788543	2.90111415704372	1.80517732185801	3.00409177451379	0.486412070562109	0.540801710226784	0.954866069207078
Merged-chr8-83669119-2	chr8	83669019	83669219	+	796.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_177262)	TTS (NM_177262)	2475.0	NM_013641	19216.0	Mm.213000	NM_013641	ENSMUSG00000019464	Ptger1	EP1|Ptgerep1	prostaglandin E receptor 1 (subtype EP1)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-156471825-4	chr1	156471762	156471962	+	892.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009230, intron 1 of 15)	intron (NM_009230, intron 1 of 15)	2466.0	NM_009230	20652.0	Mm.28099	NM_009230	ENSMUSG00000026600	Soat1	8430426K15Rik|ACAT-1|AW550831|Acact|ald|hid	sterol O-acyltransferase 1	protein-coding	3.4691064421854	3.90973952065151	2.77274374812114	3.21484680340349	3.23434277130756	3.44219287881347	3.14021573435327	2.9423136724208	-0.345597841008037	0.559485886636856	0.960321604678676
Merged-chr16-45765100-2	chr16	45765000	45765200	+	726.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357078, intron 11 of 16)	intron (NM_001357078, intron 11 of 16)	-22145.0	NM_172511	213012.0	Mm.247453	NM_172511	ENSMUSG00000033157	Abhd10	-	abhydrolase domain containing 10	protein-coding	-1.84371485578039	-1.81332821174849	-1.82251738371298	-1.83006564316449	-1.84158176955426	-1.81133687985023	-1.5312619047181	-1.82871450833159	1.60090129203521	0.64914985597185	1
Merged-chr6-122666180-2	chr6	122666080	122666280	+	761.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39756.0	NM_139218	73708.0	Mm.27982	NM_139218	ENSMUSG00000046323	Dppa3	2410075G02Rik|PCG7|PGC7|Stella	developmental pluripotency-associated 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-148082488-1	chr2	148082388	148082588	+	711.666687	f0_c57.idr	Intergenic	Intergenic	-35519.0	NM_010446	15376.0	Mm.938	NM_010446	ENSMUSG00000037025	Foxa2	HNF3-beta|HNF3beta|Hnf-3b|Hnf3b|Tcf-3b|Tcf3b	forkhead box A2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-67181331-2	chr1	67181231	67181431	+	641.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080809, intron 21 of 37)	intron (NM_001080809, intron 21 of 37)	58304.0	NM_001080809	227231.0	Mm.343942	NM_001080809	ENSMUSG00000025991	Cps1	4732433M03Rik|CPS|D1Ucla3	carbamoyl-phosphate synthetase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-25548067-2	chr2	25547967	25548167	+	663.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1127.0	NM_009422	22030.0	Mm.3399	NM_009422	ENSMUSG00000026942	Traf2	AI325259	TNF receptor-associated factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-11341341-4	chr8	11341245	11341445	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009932, intron 3 of 47)	intron (NM_009932, intron 3 of 47)	-28519.0	NM_009931	12826.0	Mm.738	NM_009931	ENSMUSG00000031502	Col4a1	Bru|Col4a-1|Raw|Svc	collagen, type IV, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120685673-2	chr8	120685573	120685773	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1A|DNA|hAT-Charlie	17353.0	NM_001293559	12857.0	Mm.386758	NM_009941	ENSMUSG00000031818	Cox4i1	AL024441|COX|COX IV-1|COXIV|Cox4|Cox4a|IV-1	cytochrome c oxidase subunit 4I1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-88772957-3	chr18	88772857	88773057	+	810.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	121250.0	NM_018821	54607.0	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99865401-4	chr7	99865304	99865504	+	779.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164258, intron 2 of 18)	intron (NM_001164258, intron 2 of 18)	6186.0	NM_001164258	446101.0	Mm.440757	NM_001164258	ENSMUSG00000035211	Xrra1	AI449753	X-ray radiation resistance associated 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-43528460-2	chr19	43528360	43528560	+	964.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3855.0	NM_010324	14718.0	Mm.19039	NM_010324	ENSMUSG00000025190	Got1	AI789014|Got-1|cAspAT|cCAT	glutamic-oxaloacetic transaminase 1, soluble	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-105132344-1	chr9	105132244	105132444	+	894.0	f1_balb.idr	promoter-TSS (NM_029385)	promoter-TSS (NM_029385)	-539.0	NM_029385	75686.0	Mm.305810	NM_029385	ENSMUSG00000032565	Nudt16	2310041H06Rik|2810047L04Rik|2900006H04Rik|AI851783	nudix (nucleoside diphosphate linked moiety X)-type motif 16	protein-coding	2.45560787296479	1.70557424829913	1.33767392659172	2.3486262613262	3.26482040438059	3.82913944304484	1.65364224278636	3.64549189575927	2.32463268400686	0.00700761684783378	0.0851853138159102
Merged-chr10-44381155-4	chr10	44381049	44381249	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21473.0	NR_035450	100316688.0		NR_035450	ENSMUSG00000089260	Mir1929	mir-1929|mmu-mir-1929	microRNA 1929	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4559051-2	chr16	4558951	4559151	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_031182, intron 1 of 6)	CpG	669.0	NM_031182	83383.0	Mm.273210	NM_031182	ENSMUSG00000005718	Tfap4	AI642933|AP-4|D930048N17Rik|Tcfap4|bHLHc41	transcription factor AP4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117080165-2	chr10	117080065	117080265	+	685.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177798, intron 6 of 9)	ORR1F|LTR|ERVL-MaLR	-16313.0	NM_007636	12461.0	Mm.247788	NM_007636	ENSMUSG00000034024	Cct2	Cctb	chaperonin containing Tcp1, subunit 2 (beta)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-90290668-2	chr16	90290568	90290768	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CAAAAA)n|Simple_repeat|Simple_repeat	-6165.0	NM_178923	224432.0	Mm.439811	NM_178923	ENSMUSG00000022983	Scaf4	AA517739|Sfrs15|Sra4|Srsf15	SR-related CTD-associated factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-69241845-1	chr1	69241745	69241945	+	548.0	f0_balb.idr	Intergenic	Intergenic	-133786.0	NM_010154	13869.0	Mm.442420	NM_010154	ENSMUSG00000062209	Erbb4	Her4|c-erbB-4	erb-b2 receptor tyrosine kinase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-13560061-2	chr2	13559961	13560161	+	865.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-14250.0	NM_011701	22352.0	Mm.268000	NM_011701	ENSMUSG00000026728	Vim	-	vimentin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-66190580-4	chr5	66190470	66190670	+	840.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040695, intron 1 of 2)	intron (NR_040695, intron 1 of 2)	765.0	NR_040695	73639.0	Mm.48851	NR_040695	ENSMUSG00000107014	1700126H18Rik	-	RIKEN cDNA 1700126H18 gene	ncRNA	1.60685062859143	1.31633423877736	1.28255972029204	1.90377022627598	1.61978955914293	1.81592346524479	1.29008112152018	2.0896139269799	0.592000947300042	0.590472874893184	0.969416194987468
Merged-chr7-63920037-2	chr7	63919937	63920137	+	756.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001256311, exon 3 of 3)	exon (NM_001256311, exon 3 of 3)	3180.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81627351-1	chr10	81627251	81627451	+	1000.0	f0_c57.idr	promoter-TSS (NM_001163430)	promoter-TSS (NM_001163430)	-29.0	NM_001163430	50721.0	Mm.25643	NM_181586	ENSMUSG00000034748	Sirt6	2810449N18Rik|AI043036|Sir2l6	sirtuin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-91842435-2	chr12	91842335	91842535	+	584.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039089, intron 2 of 20)	B1_Mur1|SINE|Alu	6722.0	NM_001039089	20338.0	Mm.250605	NM_011344	ENSMUSG00000020964	Sel1l	AW493766|Sel1h|mKIAA4137	sel-1 suppressor of lin-12-like (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-114079983-2	chr13	114079883	114080083	+	791.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172595, intron 4 of 4)	intron (NM_172595, intron 4 of 4)	71609.0	NR_045836	319803.0	Mm.386896	NM_177004	ENSMUSG00000114213	A430090L17Rik	-	RIKEN cDNA A430090L17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-135486144-2	chr3	135486044	135486244	+	791.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027288, intron 1 of 16)	intron (NM_027288, intron 1 of 16)	533.0	NM_027288	110173.0	Mm.280536	NM_027288	ENSMUSG00000028164	Manba	2410030O07Rik|B930014J03Rik|Bmn	mannosidase, beta A, lysosomal	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-138133575-3	chr4	138133482	138133682	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355700, intron 8 of 30)	intron (NM_001355700, intron 8 of 30)	4936.0	NR_126429	73563.0	Mm.444294	NR_126429	ENSMUSG00000084804	1700095J12Rik	-	RIKEN cDNA 1700095J12 gene	ncRNA	1.80275357367093	1.50812515302032	2.89153535448576	2.5027289665191	3.22502892285041	3.0151703848356	2.47015147793078	3.06618504673076	1.32800684996158	0.101079145959496	0.494758606565247
Merged-chr5-34526952-4	chr5	34526867	34527067	+	870.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011893, intron 1 of 12)	intron (NM_011893, intron 1 of 12)	1183.0	NM_011893	24055.0	Mm.5012	NM_011893	ENSMUSG00000054520	Sh3bp2	3BP2	SH3-domain binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-51509412-1	chr2	51509312	51509512	+	632.0	f0_balb.idr	Intergenic	MIRc|SINE|MIR	-71512.0	NR_130155	73375.0	Mm.396227	NR_130155	ENSMUSG00000086007	1700057H21Rik	-	RIKEN cDNA 1700057H21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122209935-3	chr5	122209818	122210018	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028752)	promoter-TSS (NM_028752)	189.0	NM_001042489	74096.0	Mm.28804	NM_028752	ENSMUSG00000064267	Hvcn1	0610039P13Rik|AI450555|BTS|HV1|Vsop.|mVSOP	hydrogen voltage-gated channel 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-84640823-3	chr6	84640730	84640930	+	863.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177077, intron 20 of 21)	intron (NM_177077, intron 20 of 21)	-46922.0	NM_001177713	232174.0	Mm.255246	NM_175475	ENSMUSG00000063415	Cyp26b1	CP26|P450RAI-2	cytochrome P450, family 26, subfamily b, polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-14879327-4	chr8	14879235	14879435	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR31C_MM|LTR|ERVK	-9201.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-70974328-4	chr17	70974236	70974436	+	978.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_023402, exon 4 of 4)	exon (NM_023402, exon 4 of 4)	16180.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71657860-1	chr8	71657760	71657960	+	578.0	f1_balb.idr	intron (NM_001029873, intron 11 of 41)	intron (NM_001029873, intron 11 of 41)	13897.0	NM_001029873	382018.0	Mm.334606	NM_001029873	ENSMUSG00000034799	Unc13a	2410078G03Rik|Munc13-1	unc-13 homolog A (C. elegans)	protein-coding	0.838285569611916	1.83190109087828	0.883335285008445	1.58061107989883	1.50278650806972	0.908700315116437	2.39821086548673	1.58995130688754	1.07681535623693	0.415874124462634	0.896676881011847
Merged-chr19-34192268-4	chr19	34192172	34192372	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360716)	promoter-TSS (NM_001360716)	43.0	NM_029682	76630.0	Mm.130952	NM_029682	ENSMUSG00000024776	Stambpl1	1700095N21Rik|8230401J17Rik|ALMalpha|AMSH-FP	STAM binding protein like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-143528106-4	chr5	143527998	143528198	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009007)	promoter-TSS (NM_009007)	-67.0	NM_001347530	19353.0	Mm.292510	NM_009007	ENSMUSG00000001847	Rac1	AL023026|D5Ertd559e	Rac family small GTPase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-41192554-2	chr6	41192454	41192654	+	822.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	-109718.0	NM_011646	22074.0	Mm.383263	NM_011646	ENSMUSG00000054106	Try4	0910001B19Rik|Td	trypsin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-145857963-2	chr2	145857863	145858063	+	870.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_028724, intron 7 of 12)	intron (NM_028724, intron 7 of 12)	-45278.0	NM_026425	67877.0	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-22653869-2	chr16	22653769	22653969	+	799.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346673, intron 1 of 23)	intron (NM_001346673, intron 1 of 23)	3362.0	NM_138650	110197.0	Mm.194986	NM_138650	ENSMUSG00000022861	Dgkg	2900055E17Rik|90kDa|AI854428|Dagk3|E430001K23Rik|mKIAA4131	diacylglycerol kinase, gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-33892960-4	chr1	33892844	33893044	+	852.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177235, intron 1 of 6)	intron (NM_177235, intron 1 of 6)	14677.0	NM_177235	320705.0	Mm.336619	NM_177235	ENSMUSG00000042182	Bend6	B230209C24Rik	BEN domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-53532420-4	chr11	53532331	53532531	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252333, intron 2 of 9)	intron (NM_001252333, intron 2 of 9)	12243.0	NM_001361969	20362.0	Mm.274399	NM_033144	ENSMUSG00000018398	Sept8	AW046166|Sepl	septin 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-52858660-7	chr2	52858448	52858648	+	945.642883	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	CpG	680.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-66170555-3	chr2	66170438	66170638	+	884.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45745.0	NM_015736	14425.0	Mm.439760	NM_015736	ENSMUSG00000026994	Galnt3	-	polypeptide N-acetylgalactosaminyltransferase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-61638124-4	chr18	61638000	61638200	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1553.0	NR_045420	545261.0	Mm.426593	NR_045420	ENSMUSG00000098098	Bvht	Braveheart|Gm20748	braveheart long non-coding RNA	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-3135428-2	chr11	3135329	3135529	+	1000.0	f0_balb.idr|f1_balb.idr	exon (NM_030207, exon 27 of 33)	exon (NM_030207, exon 27 of 33)	11408.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-78702555-3	chr1	78702457	78702657	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033606, intron 12 of 14)	intron (NM_001033606, intron 12 of 14)	44117.0	NM_001136226	195434.0	Mm.276016	NM_001001981	ENSMUSG00000079470	Utp14b	4932411L21Rik|jsd	UTP14B small subunit processome component	protein-coding	3.12516083401632	1.68092520790804	2.50849282754312	3.03791608764603	3.58557031191388	3.99160584718281	3.24695951259761	3.23156091456808	1.38532239000149	0.039259069872136	0.282027223411168
Merged-chr11-116682700-4	chr11	116682575	116682775	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009180, intron 5 of 8)	intron (NM_009180, intron 5 of 8)	8078.0	NR_028570	100216538.0		NR_028570	ENSMUSG00000065094	Snord1a	snR38	small nucleolar RNA, C/D box 1A	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-16878814-3	chr12	16878742	16878942	+	996.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16136.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	4.40696621734424	4.29712940417376	2.3665316292826	2.96457254355357	5.30903836072449	5.27143260908614	4.05700974296581	3.93121568711893	1.31549046168222	0.0198405699208267	0.178406181573315
Merged-chr7-101061419-3	chr7	101061267	101061467	+	935.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47408.0	NM_001146010	207278.0	Mm.263041	NM_199012	ENSMUSG00000030691	Fchsd2	BC034086|R74866|Sh3md3|mKIAA0769	FCH and double SH3 domains 2	protein-coding	3.40431851133544	2.96979151599593	3.2380939927605	3.79551198453502	4.21942623804422	4.05793283333653	3.15017278485945	4.36870198524635	0.926709482112447	0.0801369205560479	0.431029336296232
Merged-chr2-45063740-3	chr2	45063648	45063848	+	848.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355291, intron 2 of 9)	intron (NM_001355291, intron 2 of 9)	-40571.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44510886-2	chr9	44510786	44510986	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_007551)	TTS (NM_007551)	11750.0	NM_030256	80288.0	Mm.370270	NM_030256	ENSMUSG00000063382	Bcl9l	B9L|BC003321|BCL9-2|DLNB11	B cell CLL/lymphoma 9-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-13161579-2	chr16	13161479	13161679	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51843.0	NM_015769	50505.0	Mm.287837	NM_015769	ENSMUSG00000022545	Ercc4	AI606920|Xpf	excision repair cross-complementing rodent repair deficiency, complementation group 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-49853153-4	chr16	49853058	49853258	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2496.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-83176210-2	chr15	83176110	83176310	+	683.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4002.0	NM_029787	109754.0	Mm.22560	NM_029787	ENSMUSG00000018042	Cyb5r3	0610016L08Rik|2500002N19Rik|C85115|Dia-1|Dia1|WU:AL591952.1-001|WU:AL591952.1-002|WU:AL591952.1-003|WU:Cyb5r3	cytochrome b5 reductase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3346346-2	chr12	3346246	3346446	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18786.0	NM_008445	16570.0	Mm.7688	NM_008445	ENSMUSG00000020668	Kif3c	mKIAA4058	kinesin family member 3C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-90655974-3	chr5	90655879	90656079	+	900.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15452.0	NM_001310656	73246.0	Mm.30172	NM_028478	ENSMUSG00000029370	Rassf6	1600016B17Rik	Ras association (RalGDS/AF-6) domain family member 6	protein-coding	1.08059279571114	1.90758476591126	1.00472890062682	0.815547087345218	1.77341958351331	1.36633985728751	0.825618115406227	0.816914104674472	-0.136404082578953	0.926835587714366	0.998431161219273
Merged-chr5-86190532-4	chr5	86190450	86190650	+	881.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310653, intron 1 of 1)	ORR1C2|LTR|ERVL-MaLR	7351.0	NM_001310653	14715.0	Mm.26791	NM_010323	ENSMUSG00000029255	Gnrhr	-	gonadotropin releasing hormone receptor	protein-coding	6.52218269165555	6.71259972716801	6.62334804659014	7.29845214244247	3.68262351482215	4.1066668040713	4.19757748347425	5.61221687045639	-2.45209820116123	4.24710920265474e-06	0.000222171127495444
Merged-chr11-103345686-2	chr11	103345638	103345838	+	824.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045346, intron 2 of 3)	intron (NR_045346, intron 2 of 3)	985.0	NR_045346	653030.0	Mm.440684	NR_045346	ENSMUSG00000085887	Arhgap27os3	F830206d12rik|Gm11648	Rho GTPase activating protein 27, opposite strand 3	ncRNA	-0.068812379479739	-0.0383474433811779	0.800875704328584	-0.0557584993192458	-0.0668441294592516	1.28291521358781	-0.04592048256538	-0.0544083557497547	1.06050271071581	0.632887906187868	1
Merged-chr11-69940858-2	chr11	69940758	69940958	+	627.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016875, intron 7 of 8)	intron (NM_016875, intron 7 of 8)	4530.0	NM_001347634	53422.0	Mm.29286	NM_016875	ENSMUSG00000018554	Ybx2	Msy2	Y box protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-109959324-4	chr2	109959246	109959446	+	913.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172671, intron 1 of 17)	intron (NM_172671, intron 1 of 17)	41699.0	NM_172671	107515.0	Mm.277351	NM_172671	ENSMUSG00000050199	Lgr4	9130225G07|A330106J01Rik|A930009A08Rik|Gpr48	leucine-rich repeat-containing G protein-coupled receptor 4	protein-coding	-1.56355737717652	-1.81244775989375	-1.82128546162293	-1.82854501295842	-1.83962066705452	-1.81053259306168	-1.81928479966835	-1.82724555674025	-1.28500227969968	0.715751224811686	1
Merged-chr13-37120436-1	chr13	37120336	37120536	+	824.333313	f0_balb.idr	Intergenic	Intergenic	-70192.0	NM_001166391	74145.0	Mm.235105	NM_028784	ENSMUSG00000039109	F13a1	1200014I03Rik|AI462306|F13a	coagulation factor XIII, A1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-32591547-4	chr6	32591437	32591637	+	955.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3345.0	NM_175750	243743.0	Mm.444029	NM_175750	ENSMUSG00000029765	Plxna4	9330117B14|Plxa4|mKIAA1550	plexin A4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115275112-2	chr11	115275013	115275213	+	808.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_007997, intron 2 of 11)	intron (NM_007997, intron 2 of 11)	1856.0	NM_007997	14149.0	Mm.4719	NM_007997	ENSMUSG00000018861	Fdxr	AR	ferredoxin reductase	protein-coding	0.516969288017631	1.07472257304252	0.536911519232429	1.20785871933646	0.518838096030967	0.761124620919984	1.26918959225353	0.99701839424236	0.201661568851547	0.902261611421358	1
Merged-chr6-56569145-4	chr6	56569036	56569236	+	920.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	135563.0	NM_025520	66373.0	Mm.25642	NM_025520	ENSMUSG00000091625	Lsm5	2010208O10Rik|2310034K10Rik	LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115339120-4	chr5	115339014	115339214	+	710.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029645, intron 1 of 2)	B3A|SINE|B2	2047.0	NM_029645	384281.0	Mm.229308	NM_029645	ENSMUSG00000029536	Gatc	2010003O18Rik	glutamyl-tRNA(Gln) amidotransferase, subunit C	protein-coding	1.36466015728757	1.06748257269608	2.05036373599694	1.55853561449032	1.26065997834568	1.07449565460519	0.824719002761591	1.01540514961448	-2.03981118985484	0.115663123675897	0.532880472714093
Merged-chr9-53676329-2	chr9	53676229	53676429	+	872.416626	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13D3|LTR|ERVK	-8822.0	NM_027807	75717.0	Mm.218910	NM_027807	ENSMUSG00000032030	Cul5	4921514I20Rik|8430423K24Rik|AI852817|C030032G03Rik|C330021I08Rik|VACM-1|VACM1	cullin 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-113695411-2	chr6	113695311	113695511	+	607.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_172161)	TTS (NM_172161)	-1639.0	NM_001347356	381801.0	Mm.333322	NM_001033463	ENSMUSG00000056952	Tatdn2	AI646012|mKIAA0218	TatD DNase domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-10970800-4	chr16	10970706	10970906	+	835.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019980, intron 1 of 3)	intron (NM_019980, intron 1 of 3)	22315.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-51469983-4	chr6	51469905	51470105	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_182650)	promoter-TSS (NM_182650)	-111.0	NM_016806	53379.0	Mm.155896	NM_016806	ENSMUSG00000004980	Hnrnpa2b1	9130414A06Rik|Hnrpa2|Hnrpa2b1|hnrnp-A	heterogeneous nuclear ribonucleoprotein A2/B1	protein-coding	5.09223233749468	5.53684493717641	5.63310828994388	5.44601402229978	5.87664260451609	5.98096393983706	6.1504982351984	5.90697295835046	0.61321855252953	0.0150508198371267	0.145536924260393
Merged-chr17-84112631-2	chr17	84112531	84112731	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33971.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127094188-2	chr10	127094088	127094288	+	885.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001171026)	TTS (NM_001171026)	15281.0	NM_001033263	216439.0	Mm.336761	NM_001033263	ENSMUSG00000025422	Agap2	AGAP-2|Centg1|PIKE|cnt-g1|mKIAA0167	ArfGAP with GTPase domain, ankyrin repeat and PH domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124981984-3	chr6	124981897	124982097	+	869.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-14723.0	NM_175696	319352.0	Mm.295327	NM_175696	ENSMUSG00000030329	Pianp	AI255183|AU067746|C530028O21Rik|Panp	PILR alpha associated neural protein	protein-coding	1.34207565266908	1.67533308565844	1.4515790686084	2.59995137069835	1.49912907243675	1.83951247556959	1.02429685965594	1.57718538117819	-1.08379614704303	0.337115346489023	0.83703930093451
Merged-chr11-59519077-4	chr11	59518981	59519181	+	752.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12441.0	NM_172941	268417.0	Mm.239793	NM_172941	ENSMUSG00000020472	Zkscan17	Nizp1|Zfp496|Znf496	zinc finger with KRAB and SCAN domains 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69061646-2	chr11	69061546	69061746	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_028005)	TTS (NM_028005)	1871.0	NM_028005	71923.0	Mm.340257	NM_028005	ENSMUSG00000045176	Borcs6	2310047M10Rik	BLOC-1 related complex subunit 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-55385993-2	chr12	55385893	55386093	+	660.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310583, intron 1 of 6)	intron (NM_001310583, intron 1 of 6)	1771.0	NM_001310583	26443.0	Mm.30210	NM_011968	ENSMUSG00000021024	Psma6	IOTA	proteasome (prosome, macropain) subunit, alpha type 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-123506705-2	chr4	123506605	123506805	+	552.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199137, intron 16 of 92)	intron (NM_001199137, intron 16 of 92)	-94794.0	NM_001167918	442834.0	Mm.483803	NM_001167918		D830031N03Rik	Kiaa0754|mKIAA0754	RIKEN cDNA D830031N03 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-54680844-1	chr6	54680744	54680944	+	555.0	f0_balb.idr	promoter-TSS (NM_001289740)	promoter-TSS (NM_001289740)	-780.0	NM_001289741	68235.0	Mm.233860	NM_026629	ENSMUSG00000038065	Mturn	2410066E13Rik|AI448550|B230212L03Rik	maturin, neural progenitor differentiation regulator homolog (Xenopus)	protein-coding	2.28330531726535	0.695268282796798	1.28588641773728	0.662953437853471	1.52024587114714	0.69925005871882	1.44449350470156	0.665479835320796	-0.915385624822463	0.549797912271389	0.958882219733107
Merged-chr8-105706076-2	chr8	105705976	105706176	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198299, intron 4 of 7)	ID_B1|SINE|B4	2092.0	NM_198299	102124.0	Mm.276087	NM_198299	ENSMUSG00000013155	Enkd1	AI606951|E130303B06Rik	enkurin domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70976900-1	chr11	70976800	70977000	+	1000.0	f1_balb.idr	TTS (NM_007573)	TTS (NM_007573)	6126.0	NM_007573	12261.0	Mm.30049	NM_007573	ENSMUSG00000018446	C1qbp	AA407365|AA986492|D11Wsu182e|HABP1|P32|gC1qBP	complement component 1, q subcomponent binding protein	protein-coding	1.06140175759948	1.26789601266643	0.393395633772517	0.384129438796304	1.60678866257432	0.407812919300385	0.396017061241315	0.385759243404629	0.0138551497188307	0.994070731833635	0.998431161219273
Merged-chr11-85126972-2	chr11	85126872	85127072	+	731.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001029934, intron 1 of 33)	intron (NM_001029934, intron 1 of 33)	12983.0	NM_001029934	237898.0	Mm.178524	NM_001029934	ENSMUSG00000000804	Usp32	2900074J03Rik|6430526O11Rik|AW045245	ubiquitin specific peptidase 32	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-105719115-2	chr5	105719015	105719215	+	823.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_178701, intron 1 of 2)	intron (NM_178701, intron 1 of 2)	18305.0	NM_178701	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	0.794189552848992	0.528740156241444	1.24381155679537	0.511699801066647	0.501083229550539	1.20273934160757	1.25725004962802	0.696302010749529	0.700367803032631	0.669628510571411	0.993577811443337
Merged-chr1-93725667-2	chr1	93725567	93725767	+	630.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025920, intron 2 of 5)	intron (NM_025920, intron 2 of 5)	6259.0	NM_001310761	67026.0	Mm.272356	NM_025920	ENSMUSG00000026279	Thap4	2010320B01Rik	THAP domain containing 4	protein-coding	0.22134341816936	-0.403832273189386	-0.407905882891036	-0.41104594954308	0.15289028591124	-0.4029134475882	-0.407007776290711	-0.410497564987378	-0.215110299648127	0.937061601467472	1
Merged-chr12-36156163-2	chr12	36155974	36156174	+	991.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_025840, intron 1 of 11)	intron (NM_025840, intron 1 of 11)	751.0	NM_025840	66912.0	Mm.288669	NM_025840	ENSMUSG00000020547	Bzw2	1110001I24Rik|Bdm2|HSPC028	basic leucine zipper and W2 domains 2	protein-coding	1.94822373662928	2.60920599401451	1.71685786906708	2.82740706645777	3.09227517282679	2.35865237972461	2.7526139353752	2.34431855851301	0.67020582844391	0.413444534967696	0.895614022124894
Merged-chr10-111977793-4	chr10	111977671	111977871	+	984.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178610, intron 5 of 9)	intron (NM_178610, intron 5 of 9)	5076.0	NM_178610	52705.0	Mm.34606	NM_178610	ENSMUSG00000063334	Krr1	2610511F02Rik|AI255219|AI428520|D10Ertd773e|Hrb2	KRR1, small subunit (SSU) processome component, homolog (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-135433062-2	chr3	135432962	135433162	+	637.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5170.0	NM_001356594	66105.0	Mm.49884	NM_025356	ENSMUSG00000078578	Ube2d3	1100001F19Rik|9430029A22Rik|AA414951	ubiquitin-conjugating enzyme E2D 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-33120177-4	chr19	33120105	33120305	+	971.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36907.0	NR_039552	100628575.0		NR_039552	ENSMUSG00000106278	Mir3970	mmu-mir-3970|mu-mir-3970	microRNA 3970	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-163580352-3	chr2	163580246	163580446	+	964.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21968.0	NM_181734	76080.0	Mm.89828	NM_029512	ENSMUSG00000017679	Ttpal	3110080A02Rik|5830472M02Rik	tocopherol (alpha) transfer protein-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-136031445-4	chr4	136031330	136031530	+	999.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9781.0	NM_013736	27224.0	Mm.27663	NM_013736	ENSMUSG00000028668	Eloa	110kDa|AA408125|Tceb3|Tceb3a	elongin A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-94009883-2	chr2	94009783	94009983	+	632.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026944, intron 1 of 9)	intron (NM_026944, intron 1 of 9)	847.0	NM_026944	69113.0	Mm.272498	NM_026944	ENSMUSG00000040174	Alkbh3	1700108H04Rik|1810020C19Rik|Abh3|mABH3	alkB homolog 3, alpha-ketoglutarate-dependent dioxygenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100451921-1	chr7	100451821	100452021	+	541.0	f1_c57bl6.idr	intron (NM_001017985, intron 30 of 32)	intron (NM_001017985, intron 30 of 32)	-21070.0	NM_009464	22229.0	Mm.6254	NM_009464	ENSMUSG00000032942	Ucp3	AI645527|Slc25a9|UCP-3	uncoupling protein 3 (mitochondrial, proton carrier)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-4895343-4	chr11	4895239	4895439	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172438)	promoter-TSS (NM_172438)	-4.0	NM_172438	107829.0	Mm.28969	NM_172438	ENSMUSG00000034274	Thoc5	1700060C24Rik|A430085L24Rik|Fmip|PK1.3|Sgk2	THO complex 5	protein-coding	3.39481534603409	3.56963227568062	2.74665122111762	3.20103055050943	3.53856584319893	2.99975781563333	3.01820344666081	3.37822298044138	-0.00175413888850557	0.997625967714877	0.999291731561454
Merged-chr19-4097265-4	chr19	4097147	4097347	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026373)	promoter-TSS (NM_026373)	-104.0	NM_026373	52004.0	Mm.29609	NM_026373	ENSMUSG00000024856	Cdk2ap2	5830466O21Rik|D19Ertd144e|Doc-1r	CDK2-associated protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-15746093-3	chr6	15745994	15746194	+	842.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175088, intron 3 of 4)	intron (NM_175088, intron 3 of 4)	25433.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-75382500-2	chr18	75382400	75382600	+	630.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001042660, intron 3 of 3)	intron (NM_001042660, intron 3 of 3)	15135.0	NM_001042660	17131.0	Mm.34407	NM_008543	ENSMUSG00000025880	Smad7	Madh7	SMAD family member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-102314302-3	chr7	102314200	102314400	+	867.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009287, intron 1 of 11)	intron (NM_009287, intron 1 of 11)	46476.0	NM_009287	20866.0	Mm.645	NM_009287	ENSMUSG00000030987	Stim1	SIM	stromal interaction molecule 1	protein-coding	0.826587017952081	2.29924981758294	1.47002163566715	1.97813684685965	0.830756377596326	1.36455541165796	1.11754886214672	1.43188901685352	-1.83261365405694	0.154854727128399	0.610096436981128
Merged-chr2-43902810-4	chr2	43902712	43902912	+	887.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301831, intron 6 of 14)	intron (NM_001301831, intron 6 of 14)	153988.0	NM_001301831	76117.0	Mm.217350	NM_153820	ENSMUSG00000049744	Arhgap15	5830480G12Rik	Rho GTPase activating protein 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-54917164-4	chr9	54917057	54917257	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177351)	promoter-TSS (NM_177351)	-133.0	NM_177351	235386.0	Mm.259334	NM_177351	ENSMUSG00000035878	Hykk	Agphd1|C630028N24Rik	hydroxylysine kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55562780-3	chr19	55562691	55562891	+	738.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360431, intron 8 of 8)	intron (NM_001360431, intron 8 of 8)	139413.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-6709266-2	chr15	6709166	6709366	+	977.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030168, intron 2 of 37)	CpG-4767	885.0	NM_030168	78757.0	Mm.275811	NM_030168	ENSMUSG00000050310	Rictor	4921505C17Rik|6030405M08Rik|AVO3|AW492497|D530039E11Rik	RPTOR independent companion of MTOR, complex 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-22008521-3	chr10	22008401	22008601	+	749.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13835.0	NM_011361	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80691854-2	chr10	80691754	80691954	+	882.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172457, intron 1 of 3)	intron (NM_172457, intron 1 of 3)	9966.0	NM_172457	208228.0	Mm.49309	NM_172457	ENSMUSG00000003348	Mob3a	5330417K06Rik|A630029F06|AV218468|Mobkl2a	MOB kinase activator 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-110058128-4	chr5	110058035	110058235	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41834.0	NM_207279	403178.0	Mm.297057	NM_207279	ENSMUSG00000064247	Plcxd1	A330045H12Rik|Gm576	phosphatidylinositol-specific phospholipase C, X domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-30632058-2	chr13	30631958	30632158	+	553.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17015.0	NR_045975	75090.0	Mm.292232	NR_045975	ENSMUSG00000086263	4930519D14Rik	-	RIKEN cDNA 4930519D14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6032830-2	chr19	6032730	6032930	+	562.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13746.0	NM_028769	74126.0	Mm.149870	NM_028769	ENSMUSG00000024807	Syvn1	1200010C09Rik|AW211966|C85322|D530017H19Rik|Hrd1	synovial apoptosis inhibitor 1, synoviolin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-128315905-2	chr6	128315805	128316005	+	624.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-15092.0	NM_011567	21679.0	Mm.14774	NM_011567	ENSMUSG00000030353	Tead4	ETFR-2|Etfr2|FR-19|Rtef1|TEAD-4|TEF-3|Tcf13r1|Tef3|Tefr|Tefr1|Tefr1a	TEA domain family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-111378367-2	chr10	111378267	111378467	+	587.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	79688.0	NM_027914	71769.0	Mm.45256	NM_027914	ENSMUSG00000035759	Bbs10	1300007O09Rik|AI452285	Bardet-Biedl syndrome 10 (human)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-66308859-2	chr7	66308759	66308959	+	759.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_146191, exon 7 of 34)	exon (NM_146191, exon 7 of 34)	72865.0	NR_106024	102465640.0		NR_106024	ENSMUSG00000098353	Mir7057	Gm27550|mmu-mir-7057	microRNA 7057	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-21179247-4	chr11	21179148	21179348	+	628.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER34A|LTR|ERV1	-59784.0	NM_139061	245944.0	Mm.170103	NM_139061	ENSMUSG00000020128	Vps54	Hcc8|Vps54l|mSLP8|wr	VPS54 GARP complex subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-101597033-2	chr14	101596933	101597133	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081278, intron 1 of 18)	RMER1A|Other|Other	12158.0	NM_001081278	210789.0	Mm.320639	NM_173380	ENSMUSG00000033083	Tbc1d4	5930406J04Rik|A930035N22|AV295684|As160	TBC1 domain family, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-13786164-4	chr2	13786064	13786264	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145838, intron 2 of 7)	L1_Mus4|LINE|L1	7356.0	NM_145838	241230.0	Mm.330004	NM_145838	ENSMUSG00000003418	St8sia6	1700007J08Rik|AI314453|AI875066|ST8SiaVI|Siat8f	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-58444696-2	chr10	58444596	58444796	+	620.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C-int|LTR|ERVK	-2156.0	NM_011240	19386.0	Mm.431695	NM_011240	ENSMUSG00000003226	Ranbp2	A430087B05Rik|AI256741|NUP358	RAN binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118446057-4	chr11	118445968	118446168	+	941.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045902, intron 2 of 2)	intron (NR_045902, intron 2 of 2)	2534.0	NM_001204130	56745.0	Mm.23845	NM_019959	ENSMUSG00000017446	C1qtnf1	1600017K21Rik|CTRP1|Zsig37	C1q and tumor necrosis factor related protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-81788872-4	chr12	81788775	81788975	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7705.0	NM_001174107	338372.0	Mm.35284	NM_177395	ENSMUSG00000042724	Map3k9	E130314H24Rik|Mlk1|Prke1	mitogen-activated protein kinase kinase kinase 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-63753532-4	chr7	63753424	63753624	+	876.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130880, intron 11 of 13)	intron (NM_130880, intron 11 of 13)	-163333.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-9771414-4	chr4	9771310	9771510	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030693, intron 1 of 3)	intron (NR_030693, intron 1 of 3)	825.0	NR_030693	320152.0	Mm.159946	NR_030693		4930412C18Rik	5730591J02Rik	RIKEN cDNA 4930412C18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-55635009-4	chr13	55634990	55635190	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001282055)	promoter-TSS (NM_001282055)	91.0	NM_001282055	212880.0	Mm.202725	NM_145975	ENSMUSG00000021500	Ddx46	2200005K02Rik|8430438J23Rik|AI325430|AI957095|mKIAA0801	DEAD (Asp-Glu-Ala-Asp) box polypeptide 46	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-98900779-2	chr12	98900679	98900879	+	832.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081191, intron 1 of 43)	CpG	705.0	NM_001081191	319670.0	Mm.390484	NM_001081191	ENSMUSG00000051166	Eml5	BC027154|C130068M19Rik	echinoderm microtubule associated protein like 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-135281210-3	chr3	135281124	135281324	+	648.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001172055)	promoter-TSS (NM_001172055)	3.0	NM_027208	69772.0	Mm.45121	NM_027208	ENSMUSG00000028167	Bdh2	1810026B04Rik|Dhrs6	3-hydroxybutyrate dehydrogenase, type 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-90677435-4	chr16	90677393	90677593	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49878.0	NM_025642	66578.0	Mm.180363	NM_025642	ENSMUSG00000022978	Mis18a	2610039C10Rik|2810018N07Rik	MIS18 kinetochore protein A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70814459-1	chr8	70814359	70814559	+	619.0	f1_c57bl6.idr	exon (NM_008353, exon 9 of 16)	exon (NM_008353, exon 9 of 16)	6010.0	NM_008353	16161.0	Mm.731	NM_008353	ENSMUSG00000000791	Il12rb1	CD212|IL-12R[b]	interleukin 12 receptor, beta 1	protein-coding	0.380287417315197	1.85253443219998	1.29229210104438	0.40052131234715	0.383352890133952	0.430475202130874	1.30772313776446	0.402601519982952	-1.66946561688604	0.595979689008495	0.971416365479727
Merged-chr1-134075800-4	chr1	134075706	134075906	+	798.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007570, exon 2 of 2)	3' UTR (NM_007570, exon 2 of 2)	3349.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-37203064-3	chr17	37202994	37203194	+	859.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	-5128.0	NM_001011518	258219.0	Mm.377382	NM_001011518	ENSMUSG00000043827	Olfr94	MOR256-32P	olfactory receptor 94	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80937923-2	chr10	80937823	80938023	+	710.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7832.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-88406065-4	chr9	88405986	88406186	+	679.799988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359958, intron 8 of 28)	MER5A1|DNA|hAT-Charlie	32865.0	NM_001359958	244962.0	Mm.439873	NM_172926	ENSMUSG00000032422	Snx14	B830022K16|C330035N22Rik|YR-14	sorting nexin 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-128696108-1	chr1	128696008	128696208	+	601.0	f1_c57bl6.idr	Intergenic	Intergenic	-103809.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	0.528399417818319	0.815734277893474	1.97236055965522	0.547163630702307	1.1441103026547	0.575240197513595	1.13884138476934	0.94144427853796	-0.682990322679945	0.660291013720395	0.990106430088814
Merged-chr8-71366080-2	chr8	71365980	71366180	+	812.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145780)	promoter-TSS (NM_001145780)	-768.0	NM_001145780	67023.0	Mm.41890	NM_025917	ENSMUSG00000002395	Use1	2010315L10Rik|5730403H22Rik|AV002165|D12|Ed2|Q-snare|p31	unconventional SNARE in the ER 1 homolog (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-119799573-6	chr2	119799514	119799714	+	847.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019392)	promoter-TSS (NM_019392)	100.0	NM_019392	22174.0	Mm.2901	NM_019392	ENSMUSG00000027298	Tyro3	AI323366|Brt|Dtk|Etk-2|Rse|Sky|TK19-2|Tif|etk2/tyro3|tk19-1	TYRO3 protein tyrosine kinase 3	protein-coding	-0.252174638474624	-0.23996882575042	-0.0772577486645454	-0.247073133610103	0.202465814739083	0.235680432776718	-0.0728867502948708	-0.246534581317065	2.74295451515173	0.232026972481361	1
Merged-chr14-55581321-2	chr14	55581221	55581421	+	704.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_033146)	TTS (NM_033146)	2827.0	NM_011189	19186.0	Mm.830	NM_011189	ENSMUSG00000022216	Psme1	AW413925|PA28a	proteasome (prosome, macropain) activator subunit 1 (PA28 alpha)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-51289313-3	chr3	51289211	51289411	+	910.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023502, intron 4 of 9)	intron (NM_023502, intron 4 of 9)	-11797.0	NM_001291062	69257.0	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35170114-2	chr17	35170052	35170252	+	791.75	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001361501)	TTS (NM_001361501)	-5275.0	NM_020027	53761.0	Mm.272462	NM_020027	ENSMUSG00000024393	Prrc2a	3110039B05Rik|Bat-2|Bat2|D17H6S51E|G2|Wbp12|mKIAA4178	proline-rich coiled-coil 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-29454972-4	chr16	29454859	29455059	+	963.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172613, intron 11 of 29)	intron (NM_172613, intron 11 of 29)	-76227.0	NM_175650	268878.0	Mm.9823	NM_175650	ENSMUSG00000048939	Atp13a5	C630015F21Rik	ATPase type 13A5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-26864975-4	chr18	26864862	26865062	+	839.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1110805.0	NM_001362334	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-121312714-2	chr9	121312614	121312814	+	953.083374	f1_balb.idr|f1_c57bl6.idr	intron (NR_152160, intron 1 of 17)	intron (NR_152160, intron 1 of 17)	15212.0	NR_152160	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-91656815-4	chr13	91656705	91656905	+	782.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360775, intron 5 of 16)	intron (NM_001360775, intron 5 of 16)	-84716.0	NM_028790	74156.0	Mm.275963	NM_028790	ENSMUSG00000021620	Acot12	1300004O04Rik|4930449F15Rik|AV027244|Cach|mCACH-1	acyl-CoA thioesterase 12	protein-coding	0.743129725260719	0.820064422850331	0.79602972500519	0.776748601011157	1.4706471146026	2.07710053194211	2.48712216305588	1.91798729703644	5.487794701795	0.00010498576072856	0.00318622046514652
Merged-chr15-83096116-3	chr15	83096013	83096213	+	655.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4092.0	NM_023475	68607.0	Mm.30056	NM_023475	ENSMUSG00000058586	Serhl	0610008B10Rik|1110019M09Rik|AU019786	serine hydrolase-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-54883756-2	chr14	54883656	54883856	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007537, intron 1 of 3)	intron (NM_007537, intron 1 of 3)	331.0	NM_007537	12050.0	Mm.6967	NM_007537	ENSMUSG00000089682	Bcl2l2	AW048834|Bcl-w|Gtrgal2|Gtrosa41|bclw|c98	BCL2-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-25972931-4	chr15	25972852	25973052	+	942.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001277318, exon 7 of 7)	3' UTR (NM_001277318, exon 7 of 7)	-11414.0	NM_144523	52521.0	Mm.29145	NM_144523	ENSMUSG00000052253	Zfp622	1110033B05Rik|D15Ertd806e|ZPR9|Znf622	zinc finger protein 622	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-61649340-1	chr14	61649240	61649440	+	801.0	f0_balb.idr	intron (NR_028264, intron 1 of 6)	CpG	-17230.0	NR_029733	387174.0		NR_029733	ENSMUSG00000093007	Mir15a	Mirn15a|mir-15a|mmu-mir-15a	microRNA 15a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-31059240-2	chr6	31059140	31059340	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	3507.0	NR_029744	387222.0		NR_029744	ENSMUSG00000065610	Mir29a	Mirn29a|mir-29a|mmu-mir-29a	microRNA 29a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88393749-2	chr3	88393649	88393849	+	623.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_025928)	TTS (NM_025928)	-9283.0	NM_007541	12096.0	Mm.389459	NM_007541	ENSMUSG00000074483	Bglap	BGP|Bglap1|OC|OG1|mOC-A	bone gamma carboxyglutamate protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97718545-4	chr11	97718438	97718638	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_054051, exon 10 of 10)	3' UTR (NM_054051, exon 10 of 10)	15104.0	NM_011971	26446.0	Mm.21874	NM_011971	ENSMUSG00000069744	Psmb3	AL033320|C10-II	proteasome (prosome, macropain) subunit, beta type 3	protein-coding	-1.50595015592756	-1.47350828872742	-1.32895206006278	-1.49137776871011	-1.50367279683513	-1.47138227162179	-1.17236421817108	-1.48993524887237	0.87905007711136	0.800098370502509	1
Merged-chr7-43677401-2	chr7	43677301	43677501	+	966.25	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_145582, exon 3 of 3)	3' UTR (NM_145582, exon 3 of 3)	5370.0	NM_145582	233189.0	Mm.26514	NM_145582	ENSMUSG00000038888	Ctu1	Atpbd3|BC005752	cytosolic thiouridylase subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-45007887-2	chr19	45007787	45007987	+	878.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_153796, exon 1 of 5)	exon (NM_153796, exon 1 of 5)	-1230.0	NM_001348259	226153.0	Mm.105585	NM_153796	ENSMUSG00000025209	Twnk	D19Ertd626e|PEO|Peo1|Twinl	twinkle mtDNA helicase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69030809-2	chr11	69030709	69030909	+	885.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001013256, exon 13 of 23)	exon (NM_001013256, exon 13 of 23)	-14828.0	NM_011496	20877.0	Mm.3488	NM_011496	ENSMUSG00000020897	Aurkb	AIM-1|AIRK2|AL022959|Aik2|Aim1|Ark2|AurB|IPL1|STK-1|Stk12|Stk5	aurora kinase B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25784277-4	chr7	25784193	25784393	+	945.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009465, intron 4 of 19)	intron (NM_009465, intron 4 of 19)	4440.0	NM_001190974	26362.0	Mm.4128	NM_009465	ENSMUSG00000002602	Axl	AI323647|Ark|Tyro7|Ufo	AXL receptor tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80381953-2	chr10	80381853	80382053	+	551.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_198615, exon 2 of 2)	exon (NM_198615, exon 2 of 2)	5698.0	NM_198615	237400.0	Mm.268389	NM_198615	ENSMUSG00000048696	Mex3d	BC059858|Rkhd1	mex3 RNA binding family member D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-143063034-4	chr2	143062944	143063144	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021335)	promoter-TSS (NM_021335)	-25.0	NM_021335	20639.0	Mm.1323	NM_021335	ENSMUSG00000008333	Snrpb2	2810052G09Rik	U2 small nuclear ribonucleoprotein B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-66038415-4	chr5	66038329	66038529	+	999.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139065, intron 3 of 6)	intron (NM_139065, intron 3 of 6)	-34144.0	NR_027961	231253.0	Mm.436542	NM_177679	ENSMUSG00000054598	9130230L23Rik	-	RIKEN cDNA 9130230L23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-180261877-2	chr2	180261777	180261977	+	693.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145851, intron 5 of 9)	intron (NM_145851, intron 5 of 9)	4341.0	NR_037274	100526556.0		NR_037274	ENSMUSG00000092827	Mir3091	mir-3091|mmu-mir-3091	microRNA 3091	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-78183064-2	chr11	78182964	78183164	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_037683)	promoter-TSS (NR_037683)	49.0	NR_037683	100529077.0		NR_037683		Snord42b	MBII-287|U42B	small nucleolar RNA, C/D box 42B	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126616385-2	chr8	126616285	126616485	+	623.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22949.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	1.42252498262972	2.09721767637748	0.630772102002508	2.35002436165596	0.587644737733534	0.657278678048454	0.635644259253355	0.873047948544815	-4.557292816293	0.00337211690870916	0.04942018567267
Merged-chr1-85277208-1	chr1	85277108	85277308	+	614.0	f1_balb.idr	Intergenic	Intergenic	-6642.0	NM_001037909	620078.0	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik	RIKEN cDNA C130026I21 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-59531335-2	chr4	59531235	59531435	+	585.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178164, intron 1 of 13)	ORR1B1|LTR|ERVL-MaLR	18029.0	NM_178164	230257.0	Mm.331640	NM_144904	ENSMUSG00000028382	Ptbp3	5830471K22Rik|AA407443|AI462022|AW107884|C86549|Rod1	polypyrimidine tract binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85231597-2	chr12	85231497	85231697	+	757.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	12116.0	NM_145445	217715.0	Mm.29041	NM_145445	ENSMUSG00000004788	Eif2b2	EIF-2Bbeta|EIF2B	eukaryotic translation initiation factor 2B, subunit 2 beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-27194234-2	chr5	27194134	27194334	+	800.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_207282, intron 1 of 25)	MTE2b|LTR|ERVL-MaLR	-67701.0	NM_001136060	13483.0	Mm.42078	NM_010075	ENSMUSG00000061576	Dpp6	B930011P16Rik|D5Buc3|D5Buc4|D5Buc5|DPP VI|Dpp-6|Gm1377|In(5)6H-p|Peplb|Rw	dipeptidylpeptidase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-56167613-2	chr13	56167513	56167713	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11272.0	NM_145976	212937.0	Mm.116697	NM_145976	ENSMUSG00000049625	Tifab	-	TRAF-interacting protein with forkhead-associated domain, family member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-19690212-4	chr13	19690108	19690308	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_181591, exon 7 of 17)	exon (NM_181591, exon 7 of 17)	7552.0	NM_001167909	73412.0	Mm.279939	NM_181591	ENSMUSG00000041138	Nme8	1700056P15Rik|Sptrx-2|Txndc3	NME/NM23 family member 8	protein-coding	1.42117356935585	1.00044499318081	1.20383057298231	1.49747090881825	1.4327946864532	2.27322332056409	1.69045835323076	1.63538278024454	1.72076227211342	0.136820693720374	0.577075563141574
Merged-chr2-11332660-4	chr2	11332556	11332756	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6833.0	NR_040369	100503147.0	Mm.91961	NR_040369	ENSMUSG00000086006	Gm13293	-	predicted gene 13293	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53097059-2	chr4	53096959	53097159	+	690.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 7 of 49)	Lx|LINE|L1	62836.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101087295-4	chr11	101087182	101087382	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011550)	promoter-TSS (NM_011550)	-8.0	NM_011550	21428.0	Mm.628	NM_011550	ENSMUSG00000017801	Mlx	Tcfl4|Tf4|bHLHd13	MAX-like protein X	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-79742254-2	chr10	79742154	79742354	+	638.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172551, intron 3 of 20)	ID4_|SINE|ID	4327.0	NM_172551	216151.0	Mm.39001	NM_172551	ENSMUSG00000020329	Polrmt	1110018N15Rik|4932416K13	polymerase (RNA) mitochondrial (DNA directed)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-35976164-2	chr12	35976064	35976264	+	577.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-16761.0	NM_011783	23795.0	Mm.7244	NM_011783	ENSMUSG00000020581	Agr2	Agr2h|Gob-4|HAG-2|XAG-2|mAG-2	anterior gradient 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-17280143-4	chr11	17280079	17280279	+	883.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	22491.0	NM_001330649	57316.0	Mm.287982	NM_020558	ENSMUSG00000000581	C1d	1110036E10Rik|AI875855|SUN-CoR	C1D nuclear receptor co-repressor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-68794173-2	chr3	68794073	68794273	+	550.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32678.0	NR_153374	102639225.0	Mm.109095	NR_153374	ENSMUSG00000102936	Gm35584	-	predicted gene, 35584	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-66896263-3	chr9	66896162	66896362	+	905.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	23443.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70373826-2	chr8	70373726	70373926	+	663.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016685, intron 1 of 18)	intron (NM_016685, intron 1 of 18)	278.0	NM_016685	12845.0	Mm.45071	NM_016685	ENSMUSG00000031849	Comp	TSP5	cartilage oligomeric matrix protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132753139-2	chr4	132753036	132753236	+	932.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_133888, intron 1 of 7)	intron (NM_133888, intron 1 of 7)	4035.0	NM_133888	100340.0	Mm.287187	NM_133888	ENSMUSG00000028885	Smpdl3b	1110054A24Rik|AU045240|Asml3b	sphingomyelin phosphodiesterase, acid-like 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-92457466-3	chr9	92457355	92457555	+	928.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178711)	promoter-TSS (NM_178711)	77.0	NM_178711	235527.0	Mm.55289	NM_178711	ENSMUSG00000032377	Plscr4	AV245873	phospholipid scramblase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-27676953-1	chr15	27676853	27677053	+	569.0	f0_balb.idr	intron (NM_198301, intron 1 of 6)	B4A|SINE|B4	4589.0	NM_001242424	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70604666-4	chr14	70604585	70604785	+	840.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001252663, exon 14 of 14)	3' UTR (NM_001252663, exon 14 of 14)	-4850.0	NM_194345	239170.0	Mm.247582	NM_194345	ENSMUSG00000022095	Fam160b2	G430067P06Rik|Rai16	family with sequence similarity 160, member B2	protein-coding	1.20686346696656	0.834887186514017	1.42994174577142	1.27185464280832	1.32236299166212	0.837465037781942	1.44227901947847	1.39387767693306	0.283179151532723	0.832922546801757	0.998431161219273
Merged-chr17-29963751-2	chr17	29963649	29963849	+	869.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41290.0	NM_148926	21769.0	Mm.220972	NM_148926	ENSMUSG00000044477	Zfand3	AW539211|TEG-27|Tex27	zinc finger, AN1-type domain 3	protein-coding	-0.478935883710193	-0.616409203395721	0.16556735299191	-0.623203400901659	-0.474878973710962	-0.615545662388444	-0.619396870285392	-0.622685999705632	-2.53116653783186	0.334316855714936	1
Merged-chr2-166586651-2	chr2	166586551	166586751	+	764.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_177782, exon 23 of 40)	exon (NM_177782, exon 23 of 40)	22129.0	NR_152154	433503.0	Mm.491336	NR_152154		Gm29679	-	predicted gene, 29679	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167319191-4	chr2	167319098	167319298	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019835, intron 1 of 8)	intron (NM_019835, intron 1 of 8)	29980.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-146913566-1	chr6	146913466	146913666	+	616.5	f0_balb.idr	intron (NM_001355728, intron 1 of 30)	intron (NM_001355728, intron 1 of 30)	25072.0	NM_026221	67533.0	Mm.103382	NM_026221	ENSMUSG00000016487	Ppfibp1	4632409B19Rik|AW214454|AW261454	PTPRF interacting protein, binding protein 1 (liprin beta 1)	protein-coding	2.31475289206194	3.46002913383389	3.50471402105342	1.8874952421443	2.70672236668836	1.57819595291465	1.2167549421169	1.1754219894116	-2.20322730390157	0.0264980517486588	0.217953519906468
Merged-chr8-111061793-4	chr8	111061666	111061866	+	855.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5427.0	NM_028274	72544.0	Mm.24174	NM_028274	ENSMUSG00000109941	Exosc6	2610510N21Rik|C76919|Mtr3	exosome component 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69945403-4	chr11	69945273	69945473	+	847.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009204, exon 7 of 11)	exon (NM_009204, exon 7 of 11)	2817.0	NM_009204	20528.0	Mm.10661	NM_009204	ENSMUSG00000018566	Slc2a4	GT2|Glut-4|Glut4|twgy	solute carrier family 2 (facilitated glucose transporter), member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-3240420-7	chr16	3240322	3240522	+	825.1904910000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-351976.0	NM_146860	258859.0	Mm.377723	NM_146860	ENSMUSG00000051003	Olfr161	MOR131-1|OR912-47M6	olfactory receptor 161	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132794224-4	chr4	132794116	132794316	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033308, intron 1 of 5)	intron (NM_001033308, intron 1 of 5)	2148.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-119839793-4	chr8	119839709	119839909	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028071, intron 2 of 3)	intron (NM_028071, intron 2 of 3)	770.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-84072363-4	chr15	84072262	84072462	+	894.633301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7013.0	NM_029946	77627.0	Mm.196288	NM_029946	ENSMUSG00000022441	Efcab6	4931407K02Rik|4932408N08Rik|bM150J22.2|mKIAA1672	EF-hand calcium binding domain 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-13835463-4	chr9	13835372	13835572	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176836, intron 5 of 9)	intron (NM_176836, intron 5 of 9)	7756.0	NM_176836	72826.0	Mm.246174	NM_176836	ENSMUSG00000037808	Fam76b	2810485I05Rik|C78303	family with sequence similarity 76, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-95416854-4	chr10	95416765	95416965	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045338)	promoter-TSS (NR_045338)	-8.0	NM_007706	216233.0	Mm.474283	NM_007706	ENSMUSG00000020027	Socs2	8030460M17|AI527257|AW108012|CIS2|Cish2|D130043N08Rik|JAB|SOCS-2|SSI-2|hg	suppressor of cytokine signaling 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-25318293-2	chr9	25318193	25318393	+	671.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	65401.0	NM_001359738	235072.0	Mm.270259	NM_009859	ENSMUSG00000001833	Sept7	Cdc10|E430034N22	septin 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171579742-1	chr1	171579642	171579842	+	639.0	f0_balb.idr	intron (NM_018729, intron 6 of 8)	intron (NM_018729, intron 6 of 8)	20549.0	NM_018729	18106.0	Mm.2299	NM_018729	ENSMUSG00000004709	Cd244	2B4|C9.1|F730046O15Rik|Ly90|NAIL|NKR2B4|Nmrk|SLAMF4	CD244 natural killer cell receptor 2B4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-32565176-4	chr4	32565083	32565283	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109661, intron 3 of 4)	intron (NM_001109661, intron 3 of 4)	6479.0	NR_026843	414068.0	Mm.389550	NR_026843	ENSMUSG00000086150	Bach2os	-	BTB and CNC homology 2, opposite strand	ncRNA	4.41209874248961	4.11124236648944	4.53256140772008	3.55696229183153	3.88773975883615	4.50742372828283	4.47077577757512	3.66077233781903	-0.0427131415559696	0.92482803273776	0.998431161219273
Merged-chr5-134343192-1	chr5	134343092	134343292	+	1000.0	f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	16738.0	NR_039544	100628570.0		NR_039544	ENSMUSG00000093311	Mir3965	mmu-mir-3965|mu-mir-3965	microRNA 3965	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-60684328-3	chr13	60684232	60684432	+	890.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	82121.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102469089-4	chr12	102468977	102469177	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199004)	promoter-TSS (NM_001199004)	-57.0	NM_001199004	27277.0	Mm.273370	NM_013747	ENSMUSG00000021192	Golga5	Ret-II	golgi autoantigen, golgin subfamily a, 5	protein-coding	8.30663929766354	8.29390588512888	8.66494798113047	8.40203747386906	8.49122674847671	8.20948995879589	8.35165310319136	8.46190938966824	-0.0393483345481131	0.751189194119149	0.998431161219273
Merged-chr9-65787633-3	chr9	65787516	65787716	+	679.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172536, intron 2 of 9)	intron (NM_172536, intron 2 of 9)	39948.0	NM_172536	214812.0	Mm.139231	NM_172536	ENSMUSG00000040524	Zfp609	9830165N24|BC016271|Znf609|mKIAA0295	zinc finger protein 609	protein-coding	-0.0182001739458192	-0.0245816672631905	-0.36813067458744	-0.371050055676553	-0.37516045377944	0.117348317525893	-0.367294487475506	-0.37054068352887	-0.419097019958112	0.868697812731949	1
Merged-chr12-69962618-1	chr12	69962518	69962718	+	554.0	f0_balb.idr	promoter-TSS (NR_036607)	promoter-TSS (NR_036607)	-791.0	NR_036607	100040999.0	Mm.394588	NR_036607	ENSMUSG00000079076	Gm3086	-	RuvB-like protein 1 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-106603332-3	chr8	106603244	106603444	+	627.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009864)	promoter-TSS (NM_009864)	-6.0	NM_009864	12550.0	Mm.35605	NM_009864	ENSMUSG00000000303	Cdh1	AA960649|ARC-1|E-cad|Ecad|L-CAM|UVO|Um	cadherin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-19972604-4	chr11	19972520	19972720	+	816.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033523, intron 1 of 5)	intron (NM_033523, intron 1 of 5)	48178.0	NM_033523	114716.0	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96555070-1	chr3	96554970	96555170	+	570.0	f1_balb.idr	TTS (NR_040409)	TTS (NR_040409)	-2887.0	NM_023719	56338.0	Mm.410189	NM_023719	ENSMUSG00000038393	Txnip	1200008J08Rik|AA682105|Hyplip1|THIF|Tbp-2|VDUP1	thioredoxin interacting protein	protein-coding	0.128011636603206	0.683214325863858	-0.0275961975836475	-0.0335632613081795	-0.042101196871738	1.02149386287365	-0.0259013647470022	-0.0325164593649564	0.627554818670155	0.771704520842183	1
Merged-chr14-46884242-4	chr14	46884130	46884330	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037221, intron 1 of 12)	CpG	1265.0	NM_001037221	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-33216526-4	chr14	33216420	33216620	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153800)	promoter-TSS (NM_153800)	-303.0	NM_153800	239027.0	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-25156635-2	chr9	25156535	25156735	+	970.4166869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4854.0	NM_020586	80517.0	Mm.142843	NM_020586	ENSMUSG00000008429	Herpud2	5031400M07Rik|AB041580	HERPUD family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-19167885-3	chr10	19167792	19167992	+	847.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038022, intron 1 of 1)	intron (NR_038022, intron 1 of 1)	654.0	NR_038022	100504265.0	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-102843876-4	chr14	102843776	102843976	+	992.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	138756.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-168208765-2	chr2	168208665	168208865	+	722.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001310084)	TTS (NM_001310084)	-1653.0	NM_001310088	11538.0	Mm.201322	NM_009628	ENSMUSG00000051149	Adnp	AA589558|mKIAA0784	activity-dependent neuroprotective protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-91024538-2	chr1	91024438	91024638	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111312, intron 1 of 12)	intron (NM_001111312, intron 1 of 12)	25811.0	NM_001111312	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-98781145-4	chr10	98781060	98781260	+	998.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-133482.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-71872507-3	chr7	71872411	71872611	+	923.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37184.0	NR_130995	78156.0	Mm.243818	NR_130995	ENSMUSG00000108669	4930441H08Rik	-	RIKEN cDNA 4930441H08 gene	ncRNA	3.43008630585107	2.71646451397573	4.12625126117101	2.98741631640758	5.11637121447629	4.88512136665781	5.60736332547565	4.97030474514252	2.24233850278736	3.986659986145e-07	2.98597609120574e-05
Merged-chr11-115142173-4	chr11	115142055	115142255	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163753, intron 1 of 8)	intron (NM_001163753, intron 1 of 8)	-8163.0	NM_145634	246746.0	Mm.277387	NM_145634	ENSMUSG00000047798	Cd300lf	CLIM1|CLM-1|CLM1|Digr2|F730004D16Rik|IREM1|IgSF13|LMIR3|Pigr3	CD300 molecule like family member F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-10451995-2	chr16	10451895	10452095	+	849.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4633.0	NM_001013778	383103.0	Mm.325732	NM_001013778	ENSMUSG00000050908	Tvp23a	Fam18a	trans-golgi network vesicle protein 23A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141627974-1	chr4	141627874	141628074	+	598.0	f1_balb.idr	exon (NM_001033150, exon 18 of 20)	exon (NM_001033150, exon 18 of 20)	-4140.0	NM_001013780	384071.0	Mm.295682	NM_001013780	ENSMUSG00000040740	Slc25a34	Gm1369	solute carrier family 25, member 34	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70548293-2	chr8	70548193	70548393	+	571.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007924, intron 1 of 11)	intron (NM_007924, intron 1 of 11)	8618.0	NM_007924	13716.0	Mm.271973	NM_007924	ENSMUSG00000070002	Ell	Ell1|Men	elongation factor RNA polymerase II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-172342814-2	chr1	172342720	172342920	+	735.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039484, intron 1 of 1)	intron (NM_001039484, intron 1 of 1)	1610.0	NM_001039484	16513.0	Mm.254563	NM_020269	ENSMUSG00000044708	Kcnj10	BIR10|BIRK-1|Kir1.2|Kir4.1	potassium inwardly-rectifying channel, subfamily J, member 10	protein-coding	1.28783683010776	3.3910889337941	1.12103563546429	1.93749287161232	2.63140519526663	2.25192058603996	1.12964130563123	2.21826304881692	-0.29411586430159	0.790674644671623	0.998431161219273
Merged-chr8-122912247-4	chr8	122912145	122912345	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 3 of 12)	intron (NM_001081379, intron 3 of 12)	63871.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	3.73322756599581	3.74616734757848	4.42202974066962	3.86512074096584	3.28914180063678	3.27740491656453	3.56720714372829	3.53982034326772	-0.807684414849615	0.10504325263073	0.505830057463611
Merged-chr17-9766113-2	chr17	9766013	9766213	+	731.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045433, intron 3 of 3)	intron (NR_045433, intron 3 of 3)	9753.0	NR_045433	71092.0	Mm.243827	NR_045433		4930452A19Rik	4933424P20Rik	RIKEN cDNA 4930452A19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84414409-3	chr8	84414306	84414506	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007578)	promoter-TSS (NM_007578)	-958.0	NM_001252060	12286.0	Mm.334658	NM_007578	ENSMUSG00000034656	Cacna1a	APCA|BI|Caca1a|Cacnl1a4|Cav2.1|Ccha1a|EA2|FHM|HPCA|MHP|MHP1|SCA6|alpha1A|la|nmf352|rkr|smrl|tg	calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	protein-coding	2.53718547392797	3.39220079979756	2.92469732593662	2.36706689094333	3.85211293573658	4.43423591567317	3.79943969747689	4.26741199597506	1.91917235005931	0.000559195319759295	0.0122282359291714
Merged-chr8-94672750-2	chr8	94672650	94672850	+	556.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_024269, intron 5 of 5)	B3|SINE|B2	5659.0	NM_024269	107566.0	Mm.393247	NM_024191	ENSMUSG00000031776	Arl2bp	1700010P10Rik|1700027H16Rik|6330544B05Rik|AI482273|AI849834|BART|Bart1	ADP-ribosylation factor-like 2 binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-37419621-4	chr1	37419531	37419731	+	974.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_198006, exon 3 of 3)	3' UTR (NM_198006, exon 3 of 3)	10472.0	NM_198006	76178.0	Mm.28085	NM_198006	ENSMUSG00000026112	Coa5	1700001A24Rik|6330578E17Rik|Pet191	cytochrome C oxidase assembly factor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-37600381-4	chr13	37600278	37600478	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-225660.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-4352403-4	chr18	4352322	4352522	+	909.4833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007746, intron 1 of 7)	intron (NM_007746, intron 1 of 7)	531.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-142931952-3	chr5	142931881	142932081	+	592.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25227.0	NM_007393	11461.0	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-23400141-2	chr16	23400041	23400241	+	551.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28992.0	NM_001004151	239766.0	Mm.208751	NM_001004151	ENSMUSG00000033383	Rtp1	Gm1766|Gm604	receptor transporter protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19702138-2	chr7	19702038	19702238	+	605.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001109748, intron 8 of 8)	B1_Mur3|SINE|Alu	-2950.0	NM_009696	11816.0	Mm.305152	NM_009696	ENSMUSG00000002985	Apoe	AI255918|Apo-E	apolipoprotein E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-81591626-4	chr12	81591511	81591711	+	946.2291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347384, intron 1 of 7)	intron (NM_001347384, intron 1 of 7)	3397.0	NM_001347385	69792.0	Mm.279993	NM_027213	ENSMUSG00000002679	Med6	1500012F11Rik|AU019660|AV213303	mediator complex subunit 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-86961984-4	chr5	86961902	86962102	+	945.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35499.0	NM_152811	71773.0	Mm.26741	NM_152811	ENSMUSG00000035836	Ugt2b1	1300012D20Rik	UDP glucuronosyltransferase 2 family, polypeptide B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-9484669-4	chr18	9484569	9484769	+	970.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	-34515.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	1.55373961546315	2.33466120859843	1.17535117889478	1.33987292417809	1.09519248070222	2.51813861941249	0.926843278812097	1.34732048781666	-0.0702996049576217	0.953377552109014	0.998431161219273
Merged-chr10-45067736-2	chr10	45067636	45067836	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011156, intron 1 of 14)	intron (NM_011156, intron 1 of 14)	522.0	NM_011156	19072.0	Mm.10281	NM_011156	ENSMUSG00000019849	Prep	AI047692|AI450383|D10Wsu136e|PEP|Pop	prolyl endopeptidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94354362-8	chr10	94354257	94354457	+	883.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 1 of 4)	MTEa|LTR|ERVL-MaLR	42408.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-43917756-2	chr7	43917656	43917856	+	548.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-16015.0	NM_174865	317652.0	Mm.389896	NM_174865	ENSMUSG00000055193	Klk15	-	kallikrein related-peptidase 15	protein-coding	-0.662826441749988	-1.00555184936033	-1.01675512286785	-1.01992432642343	-0.654846858003193	-1.00312405325568	-1.01421894731451	-1.01959449741028	0.0418081237259606	0.989738874530268	1
Merged-chr18-52180676-2	chr18	52180576	52180776	+	606.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR49|LTR|ERVK	-57130.0	NR_029788	723830.0		NR_029788	ENSMUSG00000065494	Mir28a	Mir28|Mirn28|mmu-mir-28|mmu-mir-28a	microRNA 28a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-163615461-1	chr2	163615361	163615561	+	544.0	f1_c57bl6.idr	exon (NM_181734, exon 5 of 5)	exon (NM_181734, exon 5 of 5)	8249.0	NM_001305803	76080.0	Mm.89828	NM_029512	ENSMUSG00000017679	Ttpal	3110080A02Rik|5830472M02Rik	tocopherol (alpha) transfer protein-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-160280064-2	chr2	160279964	160280164	+	718.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47430.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-31168809-4	chr8	31168697	31168897	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026453)	promoter-TSS (NM_026453)	-73.0	NM_026453	67920.0	Mm.289818	NM_026453	ENSMUSG00000031578	Mak16	2600016B03Rik|AI314911|Rbm13	MAK16 homolog	protein-coding	6.65042480534031	7.02406251140572	6.51945309547983	6.47917543304504	6.8989935899511	6.80190969052297	7.14877307627057	6.79276254853965	0.252230710084823	0.187399784563194	0.664995221281668
Merged-chr18-34878599-1	chr18	34878499	34878699	+	552.0	f0_balb.idr	Intergenic	MTD|LTR|ERVL-MaLR	17392.0	NM_007913	13653.0	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-98769491-2	chr7	98769386	98769586	+	808.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65626.0	NM_001285794	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	0.36151366648137	0.618408415214147	0.0880359342119358	0.260020043293759	0.0753210285493278	0.973277392600084	0.0895325485169448	0.0837040395087295	0.241997970130928	0.90440684253918	1
Merged-chr4-149326020-4	chr4	149325920	149326120	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8619.0	NR_131918	74310.0	Mm.440455	NR_131918	ENSMUSG00000085286	Ube4bos3	1700121F15Rik	ubiquitination factor E4B, opposite strand 3	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140506305-2	chr5	140506205	140506405	+	836.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021528, intron 1 of 1)	intron (NM_021528, intron 1 of 1)	696.0	NM_021528	59031.0	Mm.28934	NM_021528	ENSMUSG00000036599	Chst12	AI595374|C4S-2|C4ST2	carbohydrate sulfotransferase 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166083147-1	chr2	166083047	166083247	+	618.333313	f1_balb.idr	intron (NM_001252579, intron 10 of 20)	intron (NM_001252579, intron 10 of 20)	72138.0	NM_001355619	72043.0	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	1.0648130633186	2.36280718873963	1.55705938637482	2.61464698873329	2.00020711146787	0.924953923888666	0.898691416402153	0.87531270442784	-2.0557832507153	0.110945768865699	0.52126279318319
Merged-chr6-87027211-4	chr6	87027113	87027313	+	876.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020045, intron 7 of 7)	intron (NM_020045, intron 7 of 7)	-15633.0	NM_013528	14583.0	Mm.19893	NM_013528	ENSMUSG00000029992	Gfpt1	2810423A18Rik|AI324119|AI449986|GFA|GFAT|GFAT1|GFAT1m|Gfpt	glutamine fructose-6-phosphate transaminase 1	protein-coding	1.19366242287257	1.06464594168029	1.99681570785288	1.83002942049438	2.02161945198074	1.06929696827906	2.20609704391631	1.72093118523163	0.695310600150444	0.559407635698478	0.960321604678676
Merged-chr10-59952507-3	chr10	59952385	59952585	+	858.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029083)	promoter-TSS (NM_029083)	-715.0	NM_029083	74747.0	Mm.21697	NM_029083	ENSMUSG00000020108	Ddit4	5830413E08Rik|AA415483|REDD1|Rtp801|dig2	DNA-damage-inducible transcript 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-44356014-1	chr11	44355914	44356114	+	575.0	f1_c57bl6.idr	Intergenic	Intergenic	-44049.0	NM_001303244	16160.0	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	-0.21626082288347	-0.33317191638292	0.0748257294469958	-0.0660327163121512	-0.342806603375695	-0.332403864113352	-0.173539868470263	-0.189625935702358	-1.49075501914063	0.510206330690645	1
Merged-chr4-132780467-4	chr4	132780369	132780569	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12109.0	NM_011284	19891.0	Mm.2870	NM_011284	ENSMUSG00000028884	Rpa2	AA409079|AI325195|AU020965|RPA34|Rf-A2	replication protein A2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-83706626-8	chr17	83706458	83706658	+	930.81665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054082, intron 1 of 16)	intron (NM_054082, intron 1 of 16)	395.0	NM_001171052	116871.0	Mm.277668	NM_054082	ENSMUSG00000055817	Mta3	1110002J22Rik|mKIAA1266	metastasis associated 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-32166696-2	chr17	32166596	32166796	+	914.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_008716, exon 1 of 33)	exon (NM_008716, exon 1 of 33)	156.0	NM_008716	18131.0	Mm.439741	NM_008716	ENSMUSG00000038146	Notch3	AW229011|N3|hpbk	notch 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-98015198-2	chr3	98015098	98015298	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010928, intron 1 of 33)	intron (NM_010928, intron 1 of 33)	1660.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-94948509-2	chr3	94948409	94948609	+	669.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	-5599.0	NM_017395	53970.0	Mm.24308	NM_017395	ENSMUSG00000005774	Rfx5	-	regulatory factor X, 5 (influences HLA class II expression)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171466226-4	chr1	171466150	171466350	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR73|LTR|ERV1	28689.0	NM_172647	16456.0	Mm.294882	NM_172647	ENSMUSG00000038235	F11r	9130004G24|AA638916|ESTM33|JAM|JAM-1|JAM-A|Jcam|Jcam1|Ly106	F11 receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-169368963-4	chr1	169368855	169369055	+	924.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	162509.0	NM_023284	66977.0	Mm.151315	NM_023284	ENSMUSG00000026683	Nuf2	2410003C07Rik|AU044112|C85691|Cdca1|NUF2R	NUF2, NDC80 kinetochore complex component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-54468282-1	chr13	54468182	54468382	+	546.0	f1_c57bl6.idr	intron (NM_028597, intron 1 of 5)	intron (NM_028597, intron 1 of 5)	558.0	NM_028597	73666.0	Mm.292487	NM_028597	ENSMUSG00000025872	Thoc3	2410044K02Rik|AL033344	THO complex 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-163765129-3	chr2	163765047	163765247	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-14908.0	NM_001272052	11486.0	Mm.388	NM_007398	ENSMUSG00000017697	Ada	-	adenosine deaminase	protein-coding	1.98381916659833	2.32865466218354	2.94777369194722	2.84784419937024	4.76458267331017	4.89466649446156	4.2567829924909	5.17815395558305	3.21544361283853	2.38292516789408e-09	3.54425654930494e-07
Merged-chr1-88699605-4	chr1	88699509	88699709	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177305, exon 1 of 1)	3' UTR (NM_177305, exon 1 of 1)	2582.0	NM_177305	320982.0	Mm.27968	NM_177305	ENSMUSG00000049866	Arl4c	A630084M22Rik|Arl7|LAK	ADP-ribosylation factor-like 4C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139320411-2	chr5	139320311	139320511	+	580.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172723, intron 1 of 10)	intron (NM_172723, intron 1 of 10)	5053.0	NM_172723	231821.0	Mm.297819	NM_172723	ENSMUSG00000056413	Adap1	4930431P11Rik|Centa1|GC1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-60649029-1	chr13	60648929	60649129	+	541.0	f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	46818.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	0.567133478311922	0.695832703580285	0.654911130478921	0.244610559972897	0.232661178877652	0.265833784429747	1.59192531374309	0.246069255260798	0.976266884821923	0.591513191744619	1
Merged-chr2-164359896-4	chr2	164359809	164360009	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3402.0	NM_011414	20568.0	Mm.371583	NM_011414	ENSMUSG00000017002	Slpi	ALP	secretory leukocyte peptidase inhibitor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105687621-2	chr8	105687521	105687721	+	763.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001357333, exon 5 of 39)	exon (NM_001357333, exon 5 of 39)	1347.0	NM_001357333	234695.0	Mm.471640	NM_001033320	ENSMUSG00000050357	Carmil2	CG1399-PB|D130029J02Rik|Gm585|Rltpr	capping protein regulator and myosin 1 linker 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36112977-2	chr1	36112863	36113063	+	731.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14-int|LTR|ERV1	31350.0	NR_105862	102465540.0		NR_105862	ENSMUSG00000098752	Mir6897	Gm27652|mmu-mir-6897	microRNA 6897	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-148041425-2	chr2	148041325	148041525	+	549.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4039.0	NM_001291067	15376.0	Mm.938	NM_010446	ENSMUSG00000037025	Foxa2	HNF3-beta|HNF3beta|Hnf-3b|Hnf3b|Tcf-3b|Tcf3b	forkhead box A2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117825871-4	chr11	117825709	117825909	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027827)	promoter-TSS (NM_027827)	-110.0	NM_027827	71562.0	Mm.273958	NM_027827	ENSMUSG00000017718	Afmid	9030621K19Rik|Ammd|FKF|KFA|Kf|formylase	arylformamidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-150609391-4	chr2	150609303	150609503	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027977)	promoter-TSS (NM_027977)	-836.0	NM_001356492	71881.0	Mm.26599	NM_027977	ENSMUSG00000033096	Apmap	2310001A20Rik|AI314817	adipocyte plasma membrane associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28395593-2	chr7	28395493	28395693	+	821.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_019458, intron 4 of 13)	intron (NM_019458, intron 4 of 13)	2597.0	NM_019458	54624.0	Mm.7916	NM_019458	ENSMUSG00000003437	Paf1	5730511K23Rik|AA675045	Paf1, RNA polymerase II complex component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126117971-2	chr7	126117871	126118071	+	662.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028816, intron 14 of 23)	intron (NM_028816, intron 14 of 23)	-35560.0	NM_001358885	269994.0	Mm.39599	NM_001101488	ENSMUSG00000046182	Gsg1l	AI852434|C230098I05Rik|G630023A01Rik|Gm637|g1l	GSG1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107525817-2	chr9	107525717	107525917	+	701.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001174048, intron 30 of 37)	intron (NM_001174048, intron 30 of 37)	-8128.0	NM_019704	56395.0	Mm.260153	NM_019704	ENSMUSG00000010045	Tmem115	C78915|Pl6|Pp6	transmembrane protein 115	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-5859900-5	chr13	5859809	5860009	+	918.2666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1580.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-8167787-3	chr15	8167643	8167843	+	660.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MYSERV16_I-int|LTR|ERVK	-1363.0	NM_001162906	73692.0	Mm.164436	NM_001162906	ENSMUSG00000039801	2410089E03Rik	4732468D17Rik|Hug|Jbts17|b2b012Clo	RIKEN cDNA 2410089E03 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-63155930-1	chr15	63155830	63156030	+	972.0	f0_balb.idr	Intergenic	Intergenic	323678.0	NR_045279	432958.0	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-143817209-4	chr5	143817098	143817298	+	657.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-54664.0	NM_013557	15467.0	Mm.389709	NM_013557	ENSMUSG00000029613	Eif2ak1	HCR|Hri	eukaryotic translation initiation factor 2 alpha kinase 1	protein-coding	-1.84446540621454	-1.66703209084435	-1.82297003008319	-1.83062437091832	-1.84230234211872	-1.6650127732569	-1.82086056797065	-1.82925424756847	0.037684011990387	0.991491645451152	1
Merged-chr1-144775480-1	chr1	144775380	144775580	+	720.333313	f0_balb.idr	promoter-TSS (NM_022881)	promoter-TSS (NM_022881)	-53.0	NM_022881	64214.0	Mm.253927	NM_022881	ENSMUSG00000026357	Rgs18	-	regulator of G-protein signaling 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95648118-2	chr3	95648018	95648218	+	789.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-10603.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	-0.886101355436339	-1.00396555740196	-1.0149952784261	-0.729136405357512	-1.02076976304248	-1.00157537084445	-1.01249839135084	-0.724971213481921	-0.412084047333427	0.891480597011167	1
Merged-chr13-30663529-2	chr13	30663429	30663629	+	582.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_134068, intron 1 of 7)	intron (NM_134068, intron 1 of 7)	3470.0	NM_134068	105352.0	Mm.289646	NM_134068	ENSMUSG00000069255	Dusp22	JKAP|JSP1|LMW-DSP2|MKPX	dual specificity phosphatase 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-143867484-4	chr2	143867480	143867680	+	978.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4407.0	NM_001291061	12075.0	Mm.275937	NM_009751	ENSMUSG00000027420	Bfsp1	CP95	beaded filament structural protein 1, in lens-CP94	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-121741098-4	chr11	121740997	121741197	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38670.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191192758-2	chr1	191192658	191192858	+	631.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9425.0	NM_007498	11910.0	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-130839920-2	chr4	130839820	130840020	+	658.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47383.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122108287-4	chr5	122108177	122108377	+	903.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289809, intron 11 of 11)	intron (NM_001289809, intron 11 of 11)	7326.0	NM_010861	17906.0	Mm.1529	NM_010861	ENSMUSG00000013936	Myl2	MLC-2|MLC-2s/v|MLC-2v|Mlc2v|Mylpc	myosin, light polypeptide 2, regulatory, cardiac, slow	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-69397357-4	chr17	69397259	69397459	+	918.616699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13555.0	NM_009547	22666.0	Mm.29434	NM_009547	ENSMUSG00000049672	Zbtb14	ZF5|Zfp161|b2b1982Clo	zinc finger and BTB domain containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-10329552-2	chr11	10329452	10329652	+	734.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	-784464.0	NM_177033	319922.0	Mm.337851	NM_177033	ENSMUSG00000050830	Vwc2	A930041G11Rik|G11|PSST739|UNQ739|cradin	von Willebrand factor C domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124916060-4	chr6	124915954	124916154	+	864.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_152158)	promoter-TSS (NR_152158)	-809.0	NR_152158	442825.0	Mm.446713	NR_152158	ENSMUSG00000055818	A230083G16Rik	-	RIKEN cDNA A230083G16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-50071748-3	chr17	50071628	50071828	+	892.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181397, intron 4 of 9)	ORR1D2|LTR|ERVL-MaLR	118769.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129491880-2	chr4	129491780	129491980	+	803.166687	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001085491)	TTS (NM_001085491)	690.0	NM_001085491	68233.0	Mm.424983	NM_001085491	ENSMUSG00000078554	Fam229a	1700125D06Rik	family with sequence similarity 229, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-34783844-4	chr11	34783726	34783926	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033374)	promoter-TSS (NM_033374)	79.0	NM_033374	94176.0	Mm.380679	NM_033374	ENSMUSG00000020143	Dock2	AI662014|AW122239|CED-5|Hch|MBC	dedicator of cyto-kinesis 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-120101461-2	chr9	120101361	120101561	+	654.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1C|Other|Other	-8938.0	NM_144793	208638.0	Mm.236656	NM_144793	ENSMUSG00000032519	Slc25a38	AV019094|BC010801|appoptosin	solute carrier family 25, member 38	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-41052241-2	chr9	41052132	41052332	+	584.0	f0_c57.idr|f1_c57bl6.idr	intron (NM_176860, intron 1 of 13)	B1_Mur1|SINE|Alu	27274.0	NM_001357412	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	2.18675380607271	2.81233959119126	3.4209597998115	2.01880796714913	1.76203302372414	2.48079247096349	2.09468558536115	2.55208414850308	-0.992802876213039	0.234908330349729	0.731086761108682
Merged-chr2-25354125-1	chr2	25354025	25354225	+	551.0	f1_balb.idr	intron (NM_031843, intron 8 of 12)	intron (NM_031843, intron 8 of 12)	2207.0	NM_031843	83768.0	Mm.21440	NM_031843	ENSMUSG00000026958	Dpp7	DPPII|Dpp2|QPP	dipeptidylpeptidase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-4600216-2	chr2	4600116	4600316	+	620.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177844, intron 7 of 11)	intron (NM_001177844, intron 7 of 11)	40462.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-122806950-2	chr10	122806850	122807050	+	827.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110218, intron 3 of 9)	B3|SINE|B2	127635.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-16929969-2	chr5	16929869	16930069	+	906.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	376068.0	NM_001289461	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-85456708-3	chr8	85456616	85456816	+	893.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23875.0	NM_025722	66714.0	Mm.272748	NM_025722	ENSMUSG00000036934	4921524J17Rik	-	RIKEN cDNA 4921524J17 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-115666847-4	chr6	115666747	115666947	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029780, intron 1 of 16)	intron (NM_029780, intron 1 of 16)	9041.0	NM_001356334	110157.0	Mm.184163	NM_029780	ENSMUSG00000000441	Raf1	6430402F14Rik|AA990557|BB129353|Craf1|D830050J10Rik|Raf-1|c-Raf|cRaf|v-Raf	v-raf-leukemia viral oncogene 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-18602185-2	chr10	18602085	18602285	+	621.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033258, intron 27 of 33)	B3|SINE|B2	-56109.0	NM_019487	56016.0	Mm.35551	NM_019487	ENSMUSG00000019853	Hebp2	SOUL	heme binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-42380843-2	chr6	42380743	42380943	+	586.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_045169)	TTS (NR_045169)	-7575.0	NM_023580	13835.0	Mm.133330	NM_023580	ENSMUSG00000029859	Epha1	5730453L17Rik|AL033318|Eph|Esk	Eph receptor A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-41124406-4	chr4	41124297	41124497	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_139236)	promoter-TSS (NM_139236)	-58.0	NM_139236	230082.0	Mm.285797	NM_139236	ENSMUSG00000028430	Nol6	AA410091|Nrap	nucleolar protein family 6 (RNA-associated)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-145117605-2	chr5	145117505	145117705	+	903.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023142, intron 1 of 9)	intron (NM_023142, intron 1 of 9)	3349.0	NM_023142	11867.0	Mm.30010	NM_023142	ENSMUSG00000029622	Arpc1b	41kDa|AA408064|AA408534|AA571392|AF007010|AW208418|L72|SOP2Hs|p41-ARC	actin related protein 2/3 complex, subunit 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-85002125-2	chr11	85002025	85002225	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001029934, intron 29 of 33)	intron (NM_001029934, intron 29 of 33)	44371.0	NM_007607	12351.0	Mm.1641	NM_007607	ENSMUSG00000000805	Car4	AW456718|Ca4	carbonic anhydrase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32385147-3	chr2	32384999	32385199	+	696.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008491, intron 5 of 5)	intron (NM_008491, intron 5 of 5)	2640.0	NM_008491	16819.0	Mm.9537	NM_008491	ENSMUSG00000026822	Lcn2	24p3|AW212229|NRL|Sip24	lipocalin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35831248-1	chr17	35831148	35831348	+	552.0	f1_balb.idr	intron (NM_008027, intron 12 of 12)	B4|SINE|B4	7053.0	NM_011655	22154.0	Mm.273538	NM_011655	ENSMUSG00000001525	Tubb5	AA408537|AI596182|B130022C14Rik|M(beta)5	tubulin, beta 5 class I	protein-coding	0.49865123542216	1.24105222236063	0.197259779840816	0.19007671945374	1.10478146482879	0.208499714656591	0.199297793778218	0.191337736467144	-0.552187124378522	0.78344333114106	1
Merged-chr5-146791543-2	chr5	146791443	146791643	+	797.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011669, intron 1 of 8)	intron (NM_011669, intron 1 of 8)	3413.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	-1.84456824087626	-1.81369603968745	-1.82303204814395	-1.83070092346192	-1.84240106943552	-1.51787681909439	-1.82091858046888	-1.82932819844659	1.64481029852639	0.639921510788462	1
Merged-chr15-97939641-3	chr15	97939552	97939752	+	897.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24577.0	NM_001356508	380967.0	Mm.196630	NM_201359	ENSMUSG00000052369	Tmem106c	AI046681|BC046621|D15Ertd405e	transmembrane protein 106C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-112976527-4	chr12	112976424	112976624	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145900)	promoter-TSS (NM_001145900)	-39.0	NM_201646	399566.0	Mm.440140	NM_201646	ENSMUSG00000002803	Btbd6	-	BTB (POZ) domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-30733086-4	chr16	30732963	30733163	+	905.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	133340.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	0.890275806205602	2.56596453769551	0.940990098102155	1.15817076580843	1.89591905298214	1.45585695109404	1.57725539693566	1.90461370202289	0.225065197214846	0.856863543432173	0.998431161219273
Merged-chr19-29494589-4	chr19	29494511	29494711	+	971.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER21C|LTR|ERVL	27376.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-12763189-2	chr18	12763089	12763289	+	588.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252490, intron 8 of 13)	intron (NM_001252490, intron 8 of 13)	21834.0	NM_027687	71132.0	Mm.179740	NM_027687	ENSMUSG00000024430	Cabyr	1700016C01Rik|4933421A18Rik|CBP86|FSP-2	calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-27618038-4	chr3	27617941	27618141	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356953, intron 4 of 26)	intron (NM_001356953, intron 4 of 26)	-33046.0	NR_037275	100526525.0		NR_037275	ENSMUSG00000092695	Mir3092	mir-3092|mmu-mir-3092	microRNA 3092	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-96700681-2	chr15	96700581	96700781	+	884.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175121)	promoter-TSS (NM_175121)	-953.0	NM_175121	67760.0	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-55311754-4	chr9	55311664	55311864	+	967.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15149.0	NM_172923	244886.0	Mm.24361	NM_172923	ENSMUSG00000032313	Tmem266	9630029F15|AI118078|HVRP1	transmembrane protein 266	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-4777020-4	chr7	4776929	4777129	+	890.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290423, intron 1 of 4)	CpG	1112.0	NM_008350	16156.0	Mm.35814	NM_008350	ENSMUSG00000004371	Il11	IL-11	interleukin 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-26253563-4	chr7	26253476	26253676	+	985.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13255.0	NM_001167540	100312477.0	Mm.480246	NM_001167540	ENSMUSG00000046130	Vmn1r184	-	vomeronasal 1 receptor, 184	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55743911-4	chr14	55743820	55744020	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026819, intron 2 of 8)	intron (NM_026819, intron 2 of 8)	1764.0	NM_026819	52585.0	Mm.21623	NM_026819	ENSMUSG00000002332	Dhrs1	1110029G07Rik|AW112170|D14Ertd484e	dehydrogenase/reductase (SDR family) member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-106395665-4	chr1	106395546	106395746	+	904.2583619999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	150985.0	NR_106164	102466254.0		NR_106164	ENSMUSG00000098344	Mir3473f	Gm27846|mmu-mir-3473f	microRNA 3473f	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-8655670-1	chr6	8655570	8655770	+	592.0	f0_balb.idr	intron (NM_010492, intron 10 of 13)	intron (NM_010492, intron 10 of 13)	102788.0	NM_001252266	15893.0	Mm.275683	NM_010492	ENSMUSG00000062995	Ica1	69kDa|ICA69	islet cell autoantigen 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-134622855-4	chr4	134622736	134622936	+	900.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207237, intron 2 of 11)	ORR1D2|LTR|ERVL-MaLR	-54985.0	NR_105829	102465216.0		NR_105829	ENSMUSG00000099289	Mir6403	Gm27992|mmu-mir-6403	microRNA 6403	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-78903379-4	chr17	78903306	78903506	+	859.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163625, intron 2 of 6)	intron (NM_001163625, intron 2 of 6)	3586.0	NM_001163625	73671.0	Mm.45514	NM_001163625	ENSMUSG00000038045	Sult6b1	2410078J06Rik|AV101767|ST6B1	sulfotransferase family, cytosolic, 6B, member 1	protein-coding	1.75849738183876	0.975247674755211	1.68952235057019	1.63722651026323	2.3522660738738	1.90132682314418	0.959103417382329	0.940864378404905	0.45267579864608	0.72794207347055	0.998431161219273
Merged-chr11-117827539-2	chr11	117827439	117827639	+	950.944458	f1_balb.idr|f1_c57bl6.idr	intron (NM_027827, intron 1 of 10)	B1_Mur2|SINE|Alu	-1525.0	NM_009387	21877.0	Mm.2661	NM_009387	ENSMUSG00000025574	Tk1	D530002A18Rik|Tk-1|Tk1a|Tk1b	thymidine kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-92832383-1	chr1	92832283	92832483	+	650.0	f0_balb.idr	intron (NM_016696, intron 1 of 8)	CpG	738.0	NM_016696	14733.0	Mm.297976	NM_016696	ENSMUSG00000034220	Gpc1	AI462976	glypican 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-60691803-1	chr13	60691703	60691903	+	618.666687	f0_balb.idr	intron (NM_134062, intron 2 of 26)	ORR1D2|LTR|ERVL-MaLR	89592.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-78372811-4	chr17	78372710	78372910	+	778.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015800, intron 16 of 16)	intron (NM_015800, intron 16 of 16)	45342.0	NM_001285949	225020.0	Mm.236835	NM_199448	ENSMUSG00000056121	Fez2	9030616F16|D17Ertd315e	fasciculation and elongation protein zeta 2 (zygin II)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100352321-2	chr11	100352222	100352422	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359052, intron 6 of 12)	intron (NM_001359052, intron 6 of 12)	3806.0	NM_001359052	15114.0	Mm.281700	NM_010404	ENSMUSG00000006930	Hap1	HAP-1	huntingtin-associated protein 1	protein-coding	0.841184041656741	0.594054635067626	0.585486061754828	0.889218469675046	0.961543464020768	1.22748054020401	1.17523319051229	0.894199501185526	1.89016818972112	0.213846409071741	1
Merged-chr10-42226439-2	chr10	42226339	42226539	+	624.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019740, intron 2 of 3)	intron (NM_019740, intron 2 of 3)	50303.0	NM_019740	56484.0	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-60852057-4	chr2	60851986	60852186	+	983.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	29352.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-33686358-2	chr17	33686258	33686458	+	625.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029804)	promoter-TSS (NM_029804)	-900.0	NM_029804	76936.0	Mm.311439	NM_029804	ENSMUSG00000059208	Hnrnpm	2610023M21Rik|AA409009|Hnrpm|mKIAA4193	heterogeneous nuclear ribonucleoprotein M	protein-coding	0.956244959444929	0.013398193181153	0.00566106475797296	-0.000375162957953035	0.972814852667944	0.0151292145545099	0.00737580194872606	0.000683669953711025	0.0420561319514604	0.985393473989274	1
Merged-chr1-128723898-3	chr1	128723792	128723992	+	761.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-131593.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	1.3196089380926	3.00638812710579	3.0767467566618	2.81819302822232	1.3304893822634	3.02907150627931	3.10112277498575	2.83321588906162	0.0368994332702026	0.968132449541377	0.998431161219273
Merged-chr10-127551507-1	chr10	127551407	127551607	+	561.0	f1_c57bl6.idr	intron (NM_008512, intron 63 of 88)	IMPB_01|Satellite|Satellite	-16948.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-42759918-4	chr10	42759817	42760017	+	942.6416630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1579.0	NM_001359283	140740.0	Mm.214344	NM_153055	ENSMUSG00000019802	Sec63	5730478J10Rik|AI649014|AW319215	SEC63-like (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99154782-3	chr15	99154672	99154872	+	684.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139140, intron 2 of 12)	RLTR45|LTR|ERVK	27927.0	NM_139140	72572.0	Mm.276650	NM_139140	ENSMUSG00000051934	Spats2	2700012F11Rik|59kDa|Scr59|p59	spermatogenesis associated, serine-rich 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-31675645-1	chr11	31675545	31675745	+	614.666687	f1_c57bl6.idr	Intergenic	Intergenic	-3783.0	NM_001024919	69556.0	Mm.34183	NM_001024919	ENSMUSG00000044502	Bod1	2310022M17Rik|BOD2.1|Fam44b	biorientation of chromosomes in cell division 1	protein-coding	2.64434608389062	3.52273719719281	3.47780532007663	3.08241155058349	1.96181239338582	2.87602713957134	3.43411137603487	2.5620714289589	-0.710349861994514	0.307992526760911	0.808952350279644
Merged-chr1-95038913-2	chr1	95038813	95039013	+	627.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	241471.0	NR_040473	74689.0	Mm.399187	NR_040473	ENSMUSG00000100518	4930440C22Rik	-	RIKEN cDNA 4930440C22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167911527-2	chr2	167911427	167911627	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20800.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-5771690-2	chr2	5771590	5771790	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-56928.0	NM_177343	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-121981950-2	chr11	121981850	121982050	+	801.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A0|LTR|ERVL-MaLR	151732.0	NM_029049	74675.0	Mm.61213	NM_029049	ENSMUSG00000039198	Ptchd3	4930451E13Rik|4933440L20Rik|RNDEu-3	patched domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-56101240-4	chr9	56101119	56101319	+	870.6416630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011193, intron 1 of 14)	intron (NM_011193, intron 1 of 14)	11243.0	NM_011193	19200.0	Mm.2534	NM_011193	ENSMUSG00000032322	Pstpip1	CD2BP1|def-2	proline-serine-threonine phosphatase-interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-99358504-1	chr9	99358404	99358604	+	697.0	f0_balb.idr	promoter-TSS (NM_177775)	promoter-TSS (NM_177775)	26.0	NM_177775	272636.0	Mm.490440	NM_177775	ENSMUSG00000037681	Esyt3	D930024E11|D9Ertd280e|Fam62c|mKIAA4186	extended synaptotagmin-like protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-89267285-4	chr9	89267157	89267357	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55873.0	NM_001359993	107885.0	Mm.486274	NM_026829	ENSMUSG00000066442	Mthfs	1110034I12Rik|2310020H23Rik|AI119695	5, 10-methenyltetrahydrofolate synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-32376435-4	chr18	32376392	32376592	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001083334)	promoter-TSS (NM_001083334)	-725.0	NM_001083334	30948.0	Mm.4383	NM_009668	ENSMUSG00000024381	Bin1	ALP-1|Amphl|BRAMP-2|SH3P9	bridging integrator 1	protein-coding	1.35902016070309	3.0385532249137	2.6545005856987	3.00668895045004	2.64938864665111	2.01632279997457	2.43714514936935	2.78422060463242	-0.327607099235543	0.703459579311466	0.998431161219273
Merged-chr15-64047219-3	chr15	64047127	64047327	+	920.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360037, intron 1 of 11)	intron (NM_001360037, intron 1 of 11)	12537.0	NM_001360038	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-110985880-2	chr7	110985780	110985980	+	600.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3419.0	NM_194464	17540.0	Mm.250023	NM_010826	ENSMUSG00000005611	Mrvi1	BB115629|Irag|Ris1	MRV integration site 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5490428-4	chr19	5490330	5490530	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007687)	promoter-TSS (NM_007687)	-25.0	NM_007687	12631.0	Mm.329655	NM_007687	ENSMUSG00000056201	Cfl1	AA959946|Cof	cofilin 1, non-muscle	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-105626843-4	chr7	105626700	105626900	+	827.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018880, intron 1 of 11)	intron (NM_018880, intron 1 of 11)	6771.0	NM_018880	55992.0	Mm.29290	NM_018880	ENSMUSG00000036989	Trim3	BERP1|HAC1|Rnf22	tripartite motif-containing 3	protein-coding	1.80608091082649	2.1690308956115	2.67208813824742	1.04677739616155	1.56910077073625	1.09916751557565	2.10695649372935	1.4861126684599	-1.17188960429804	0.303653679103801	0.805462835517226
Merged-chr10-81597386-3	chr10	81597300	81597500	+	822.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359135)	promoter-TSS (NM_001359135)	-33.0	NM_001359135	114606.0	Mm.206764	NM_053254	ENSMUSG00000034758	Tle6	1810057E06Rik|Grg6	transducin-like enhancer of split 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-30920808-3	chr1	30920672	30920872	+	696.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28938.0	NR_002688	433406.0	Mm.389003	NR_002688		Gm13363	-	predicted gene 13363	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-5860926-3	chr5	5860830	5861030	+	960.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-111613.0	NM_027399	70358.0	Mm.85429	NM_027399	ENSMUSG00000015652	Steap1	2410007B19Rik|Prss24|Steap	six transmembrane epithelial antigen of the prostate 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-142078205-4	chr4	142078102	142078302	+	937.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145402, intron 1 of 2)	intron (NM_145402, intron 1 of 2)	-6096.0	NR_027137	100038693.0	Mm.402714	NR_027137	ENSMUSG00000073728	Tmem51os1	Gm10565|Tmem51as1	Tmem51 opposite strand 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90449119-2	chr2	90449063	90449263	+	918.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 17 of 23)	MLT1C|LTR|ERVL-MaLR	30011.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.760466399514961	0.826002628156207	2.1004114851668	2.10770491241937	0.764784016519366	1.65301150033914	0.809952171151332	1.76488434288075	-0.839034388561584	0.567020790657227	0.962562732139494
Merged-chr12-108641573-2	chr12	108641473	108641673	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163396, intron 2 of 14)	intron (NM_001163396, intron 2 of 14)	5820.0	NM_001163396	14026.0	Mm.238841	NM_007965	ENSMUSG00000021262	Evl	AI528774|b2b2600Clo	Ena-vasodilator stimulated phosphoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-29060254-4	chr2	29060166	29060366	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009442)	promoter-TSS (NM_009442)	3.0	NM_009442	22130.0	Mm.252195	NM_009442	ENSMUSG00000026803	Ttf1	AV245725|TTF-1|TTF-I	transcription termination factor, RNA polymerase I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21320270-2	chr9	21320170	21320370	+	699.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199186)	promoter-TSS (NM_001199186)	-449.0	NM_001359227	68682.0	Mm.148425	NM_152808	ENSMUSG00000057193	Slc44a2	1110028E10Rik|CTL2	solute carrier family 44, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-70738384-4	chr17	70738291	70738491	+	971.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347411, intron 9 of 14)	intron (NM_001347411, intron 9 of 14)	108386.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	2.76889763011689	3.43057231500101	3.76149626815469	3.03265501487583	2.67886815429705	3.45546307362613	3.96256475871335	3.2398459301611	0.178565216279168	0.769943618037155	0.998431161219273
Merged-chr14-54231380-2	chr14	54231321	54231521	+	837.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	22508.0	NM_001113358	13135.0	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	1.58720266748754	1.94468959054943	2.91879929909778	1.97057139200493	2.11091513500459	1.5626770094971	1.89473885834706	2.32193064911288	-0.521505086504724	0.584640052391581	0.967268722441911
Merged-chr19-11352103-2	chr19	11352003	11352203	+	680.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15957.0	NM_027836	109225.0	Mm.491251	NM_027836	ENSMUSG00000024672	Ms4a7	9130422I10Rik|A430103C15Rik|CD20l4|CFFMA	membrane-spanning 4-domains, subfamily A, member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-80047658-2	chr12	80047558	80047758	+	834.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	65355.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-79859837-2	chr1	79859737	79859937	+	575.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-1172.0	NM_009255	20720.0	Mm.3093	NM_009255	ENSMUSG00000026249	Serpine2	B230326M24Rik|PAI-1|PI-7|PI7|PN-1|Spi4	serine (or cysteine) peptidase inhibitor, clade E, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-116145399-4	chr9	116145296	116145496	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029575, intron 1 of 6)	intron (NM_029575, intron 1 of 6)	29967.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	4.38667291791264	4.77747988521799	4.02742638496789	4.42529277859999	3.93451757833716	4.66791486454923	4.31352779432324	4.34886321161816	-0.122457066588814	0.760746970389536	0.998431161219273
Merged-chr1-72243174-2	chr1	72243074	72243274	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_155355)	promoter-TSS (NR_155355)	-819.0	NR_155355	320933.0	Mm.440953	NR_155355		D230017M19Rik	B930094L07Rik	RIKEN cDNA D230017M19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-94550730-2	chr11	94550630	94550830	+	673.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER70A|LTR|ERVL	-1523.0	NM_001013381	237926.0	Mm.342275	NM_001013381	ENSMUSG00000039096	Rsad1	B430319G23|BC056485	radical S-adenosyl methionine domain containing 1	protein-coding	0.350932846261512	0.919318552202785	0.369694971317755	0.362690972866595	0.658559099879445	1.17802964729803	1.11751969922974	0.363918701518372	1.9570005374585	0.284433359982928	1
Merged-chr9-47671257-3	chr9	47671131	47671331	+	829.43335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	140879.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	3.04744510477262	1.95699916042995	2.78984966889998	2.24994372046477	3.53926090036486	3.94732163584277	2.8133353745095	4.05199563084441	1.78189760199106	0.00744224362668909	0.0885248238926131
Merged-chr1-154094959-2	chr1	154094859	154095059	+	558.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-106228.0	NM_001204908	100503355.0	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	Gm10178|Gm203	zinc finger protein 648	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-92269214-4	chr6	92269119	92269319	+	814.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24569.0	NM_009426	22044.0	Mm.1363	NM_009426	ENSMUSG00000005892	Trh	Pro-TRH|Trf	thyrotropin releasing hormone	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153342513-2	chr2	153342413	153342613	+	573.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040318, exon 2 of 2)	non-coding (NR_040318, exon 2 of 2)	3297.0	NR_040318	72326.0	Mm.400102	NR_040318	ENSMUSG00000073236	2500004C02Rik	-	RIKEN cDNA 2500004C02 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-69969303-2	chr17	69969203	69969403	+	690.166626	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001347412, exon 1 of 14)	5' UTR (NM_001347412, exon 1 of 14)	230.0	NM_001347411	224997.0	Mm.311840	NM_027712	ENSMUSG00000003279	Dlgap1	4933422O14Rik|9630002F18|AI845682|AI848168|BB075781|D17Bwg0511e|GKAP/SAPAP|GKPA/SAPAP|Gkap|Sapap1|mKIAA4162	DLG associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-26460270-4	chr12	26460153	26460353	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3801.0	NM_021384	58185.0	Mm.24045	NM_021384	ENSMUSG00000020641	Rsad2	2510004L01Rik|Vig1|cig5	radical S-adenosyl methionine domain containing 2	protein-coding	5.22715823990661	5.56209291242298	5.24408288240709	5.32966489176886	5.04190761418555	5.40307287616507	5.8918317227082	5.5393824876798	0.176940364242739	0.542179131845156	0.954935047166076
Merged-chr8-83090274-4	chr8	83090163	83090363	+	853.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177378, exon 7 of 7)	3' UTR (NM_177378, exon 7 of 7)	-75089.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	2.11723595451862	3.21532640213627	2.31567029356236	3.71436617866043	2.43886684798467	3.02173123331067	3.22383079310891	3.92696180059648	0.421939256665175	0.559929838934089	0.960321604678676
Merged-chr3-83895843-2	chr3	83895743	83895943	+	601.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54235.0	NM_011905	24088.0	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-39599174-1	chr8	39599074	39599274	+	910.0	f1_balb.idr	intron (NM_001113326, intron 8 of 9)	MT2A|LTR|ERVL	43504.0	NM_031195	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	0.84273485552122	2.1578030853088	0.93324460742298	1.29024318948296	0.610414608803867	0.68651291145272	0.662965166583418	2.5410927888891	0.121951857045455	0.93252268439687	0.998431161219273
Merged-chr4-75323559-2	chr4	75323459	75323659	+	648.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4A|LINE|L1	-45267.0	NM_025849	66928.0	Mm.24332	NM_025849	ENSMUSG00000028398	Dmac1	1700027K24Rik|3110001D03Rik|Tmem261	distal membrane arm assembly complex 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-94837411-4	chr3	94837312	94837512	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172683)	promoter-TSS (NM_172683)	-155.0	NM_001165948	229584.0	Mm.274787	NM_172683	ENSMUSG00000038902	Pogz	9530006B08Rik	pogo transposable element with ZNF domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105880886-4	chr8	105880797	105880997	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181594)	promoter-TSS (NM_181594)	16.0	NM_181594	234699.0	Mm.28979	NM_181594	ENSMUSG00000036270	Edc4	BC022641	enhancer of mRNA decapping 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-60383401-4	chr2	60383287	60383487	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013825)	promoter-TSS (NM_013825)	-156.0	NM_013825	17076.0	Mm.2074	NM_013825	ENSMUSG00000026980	Ly75	CD205|DEC-205|DEC205	lymphocyte antigen 75	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118875682-2	chr9	118875582	118875782	+	998.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 11 of 13)	RMER15|LTR|ERVL	-50854.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-102747474-2	chr14	102747374	102747574	+	604.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	235158.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-8691836-2	chr6	8691736	8691936	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252266, intron 5 of 11)	RMER17C|LTR|ERVK	66622.0	NM_001252266	15893.0	Mm.275683	NM_010492	ENSMUSG00000062995	Ica1	69kDa|ICA69	islet cell autoantigen 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-81673892-3	chr4	81673805	81674005	+	883.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-186892.0	NR_030570	100124446.0		NR_030570	ENSMUSG00000077941	Mir466h	Mirn466h	microRNA 466h	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-165645375-2	chr1	165645275	165645475	+	855.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10834.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-18066512-2	chr2	18066412	18066612	+	570.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_010804, intron 2 of 22)	B1_Mur1|SINE|Alu	1927.0	NM_001252561	17354.0	Mm.209175	NM_010804	ENSMUSG00000026743	Mllt10	Af10|B130021D15Rik|D630001B22Rik|mKIAA4140	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-83740027-3	chr2	83739878	83740078	+	766.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008402, intron 2 of 29)	intron (NM_008402, intron 2 of 29)	15581.0	NM_008402	16410.0	Mm.227	NM_008402	ENSMUSG00000027087	Itgav	1110004F14Rik|2610028E01Rik|CD51|D430040G12Rik	integrin alpha V	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-10132766-4	chr10	10132676	10132876	+	887.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-231736.0	NM_001081344	78808.0	Mm.331751	NM_030191	ENSMUSG00000019790	Stxbp5	0710001E20Rik|4930565N16Rik|AW742610|LGL3|mKIAA1006	syntaxin binding protein 5 (tomosyn)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-96121296-2	chr8	96121196	96121396	+	595.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC1|LINE|L1	-232931.0	NM_010325	14719.0	Mm.230169	NM_010325	ENSMUSG00000031672	Got2	AL022787|FABP-pm|Got-2|Kyat4|mAspAT	glutamatic-oxaloacetic transaminase 2, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-54492253-4	chr11	54492167	54492367	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173753, intron 9 of 17)	L1MB3|LINE|L1	-30578.0	NM_001252494	192786.0	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-28929058-4	chr16	28928979	28929179	+	885.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177718, intron 1 of 1)	CpG	619.0	NM_177718	239796.0	Mm.155887	NM_177718	ENSMUSG00000051065	Mb21d2	1600021P15Rik|A430031N04|C87006	Mab-21 domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-133442765-3	chr2	133442645	133442845	+	799.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-109414.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-41135370-4	chr4	41135243	41135443	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026275)	promoter-TSS (NM_026275)	-678.0	NM_026275	67615.0	Mm.389540	NM_026275	ENSMUSG00000036241	Ube2r2	1200003M11Rik|Cdc34b|Ubc3b	ubiquitin-conjugating enzyme E2R 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-17658557-2	chr14	17658457	17658657	+	670.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2403.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-3279221-3	chr5	3279127	3279327	+	621.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	-64666.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132352800-2	chr4	132352700	132352900	+	834.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_003270, intron 1 of 2)	U17|snRNA|snRNA	886.0	NR_003270	399101.0	Mm.486919	NR_002904	ENSMUSG00000085241	Snhg3	Rnu17d|U17HG	small nucleolar RNA host gene 3	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-117168628-3	chr6	117168600	117168800	+	630.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_021704, exon 1 of 3)	exon (NM_021704, exon 1 of 3)	165.0	NM_021704	20315.0	Mm.303231	NM_013655	ENSMUSG00000061353	Cxcl12	Pbsf|Scyb12|Sdf1|Tlsf|Tpar1	chemokine (C-X-C motif) ligand 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-6310395-3	chr6	6310297	6310497	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_136905, intron 1 of 3)	Tigger1|DNA|TcMar-Tigger	61738.0	NR_136905	101056138.0	Mm.389085	NR_136904	ENSMUSG00000093482	Gm20619	-	predicted gene 20619	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91729663-2	chr2	91729563	91729763	+	746.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172669)	promoter-TSS (NM_172669)	-475.0	NM_172669	228361.0	Mm.436667	NM_172669	ENSMUSG00000040506	Ambra1	2310079H06Rik|A130023A14|AA474864|AV021921|D030051N19Rik|mKIAA1736	autophagy/beclin 1 regulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-23982358-4	chr17	23982247	23982447	+	879.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7117.0	NM_013921	30943.0	Mm.142568	NM_013921	ENSMUSG00000024124	Prss30	2010015P21Rik|Disp|Disp1|Tmprss8	protease, serine 30	protein-coding	2.14364228028946	1.12467796262132	1.35162887249247	2.64684952165092	1.44947281562767	1.13078730480337	2.4511427315651	2.18748120891672	-0.137004660625531	0.905372596163194	0.998431161219273
Merged-chr7-4502824-4	chr7	4502641	4502841	+	896.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-1061.0	NM_029834	232807.0	Mm.360391	NM_029834	ENSMUSG00000019254	Ppp1r12c	2410197A17Rik|AI839747|B430101M08|Mbs85	protein phosphatase 1, regulatory (inhibitor) subunit 12C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28233192-1	chr17	28233092	28233292	+	1000.0	f0_balb.idr	intron (NM_011145, intron 1 of 7)	intron (NM_011145, intron 1 of 7)	438.0	NM_011145	19015.0	Mm.328914	NM_011145	ENSMUSG00000002250	Ppard	NUC-1|NUC1|Nr1c2|PPAR-beta|PPAR-delta|PPAR[b]|PPARdelta|Pparb|Pparb/d	peroxisome proliferator activator receptor delta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-41951358-4	chr10	41951249	41951449	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034858, intron 11 of 17)	MTD|LTR|ERVL-MaLR	63910.0	NM_001013370	140742.0	Mm.139418	NM_001013370	ENSMUSG00000038332	Sesn1	1110002G11Rik|AU044290|Pa26|Sest1	sestrin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81408992-4	chr10	81408883	81409083	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_152732)	promoter-TSS (NR_152732)	-592.0	NR_152732	102634174.0	Mm.392213	NR_152732	ENSMUSG00000085327	Gm16104	-	predicted gene 16104	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-18624074-4	chr19	18623989	18624189	+	922.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017375, intron 1 of 9)	intron (NM_017375, intron 1 of 9)	7724.0	NM_017375	20409.0	Mm.172222	NM_017375	ENSMUSG00000024725	Ostf1	C78236|SH3P2|Sh3d3	osteoclast stimulating factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-28115058-2	chr3	28114958	28115158	+	607.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008875, intron 22 of 25)	intron (NM_008875, intron 22 of 25)	130887.0	NM_008875	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150230650-2	chr4	150230550	150230750	+	580.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6547.0	NM_023119	13806.0	Mm.70666	NM_023119	ENSMUSG00000063524	Eno1	0610008I15|AL022784|Eno-1|MBP-1	enolase 1, alpha non-neuron	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-113149681-1	chr12	113149581	113149781	+	715.0	f1_balb.idr	Intergenic	Intergenic	-2331.0	NM_007763	12925.0	Mm.272368	NM_007763	ENSMUSG00000006360	Crip1	CRHP|CRP1|Crip	cysteine-rich protein 1 (intestinal)	protein-coding	-0.823961253037741	-1.05642094453325	-1.06711623874342	-0.784165847317946	-0.937251310205225	-1.05410322966142	-1.06469505856841	-1.0724668679263	-1.52434391382361	0.613838163289936	1
Merged-chr17-34022809-1	chr17	34022709	34022909	+	579.0	f1_c57bl6.idr	intron (NM_009066, intron 4 of 6)	intron (NM_009066, intron 4 of 6)	1871.0	NM_009066	19763.0	Mm.20343	NM_009066	ENSMUSG00000024325	Ring1	Ring1A	ring finger protein 1	protein-coding	0.325906056727084	0.881176175608152	0.536281400794814	1.10824582015522	1.11225188416421	0.353586330392556	0.345182979741988	0.337957685900848	-0.799060485563442	0.668150557817175	1
Merged-chr6-116072450-1	chr6	116072350	116072550	+	561.0	f0_balb.idr	intron (NM_177412, intron 3 of 5)	intron (NM_177412, intron 3 of 5)	-77445.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-115487375-4	chr9	115487258	115487458	+	994.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger7|DNA|TcMar-Tigger	105539.0	NR_130329	100316675.0		NR_130329	ENSMUSG00000080409	Mir467h	Mirn467h|mmu-mir-467h	microRNA 467h	ncRNA	2.63824780475185	3.58884521117931	2.12940353307294	2.4802697776414	2.37098047805278	2.38716054826944	2.14616988114315	2.37137494948037	-1.04499049521808	0.18491051208625	0.660415655093519
Merged-chr19-56548554-4	chr19	56548432	56548632	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018831)	promoter-TSS (NM_018831)	271.0	NM_025811	66866.0	Mm.46346	NM_025811	ENSMUSG00000025078	Nhlrc2	1200003G01Rik|AI835049|AV002846|AW496455	NHL repeat containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-88435831-3	chr6	88435718	88435918	+	901.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023060, intron 1 of 6)	intron (NM_023060, intron 1 of 6)	10721.0	NM_023060	65967.0	Mm.333237	NM_023060	ENSMUSG00000033216	Eefsec	Selb|mSelB|sec	eukaryotic elongation factor, selenocysteine-tRNA-specific	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-13162320-4	chr8	13162224	13162424	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010684, intron 1 of 8)	intron (NM_010684, intron 1 of 8)	3163.0	NM_010684	16783.0	Mm.16716	NM_010684	ENSMUSG00000031447	Lamp1	CD107a|LGP-120|LGP-A|Lamp-1|P2B|Perk	lysosomal-associated membrane protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-4767076-4	chr13	4766983	4767183	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-157919.0	NM_018859	56043.0	Mm.251908	NM_018859	ENSMUSG00000045410	Akr1e1	1810061I10Rik|Akr1e2	aldo-keto reductase family 1, member E1	protein-coding	3.756207946627	4.32003244285523	3.43027584747156	4.7845658840056	3.43907094171006	3.94526584128865	3.64928237900811	4.47838513553236	-0.323813140370401	0.520164445548007	0.947641799425091
Merged-chr5-137507265-2	chr5	137507165	137507365	+	621.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-4836.0	NM_028753	74097.0	Mm.290242	NM_028753	ENSMUSG00000029715	Pop7	0610037N12Rik|AI852017|Rpp20	processing of precursor 7, ribonuclease P family, (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-104247215-4	chr8	104247111	104247311	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045642, intron 2 of 8)	intron (NR_045642, intron 2 of 8)	1347.0	NR_045642	57813.0	Mm.183110	NM_021028	ENSMUSG00000035824	Tk2	AU024611|mt-TK	thymidine kinase 2, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43480221-2	chr4	43480083	43480283	+	647.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	3526.0	NM_019436	54390.0	Mm.31775	NM_019436	ENSMUSG00000028460	Sit1	Sit	suppression inducing transmembrane adaptor 1	protein-coding	1.42030188565781	0.939015354013784	1.91776904070535	0.918700803348491	1.43253240784767	0.941602911706246	2.10436896559423	1.09368454547408	0.475540466652747	0.735396142650283	0.998431161219273
Merged-chr1-182528129-4	chr1	182528008	182528208	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10498.0	NM_009794	12334.0	Mm.19306	NM_009794	ENSMUSG00000026509	Capn2	AI326419|CALP80|Capa-2|Capa2|m-calpain|m-calpin	calpain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34284645-2	chr17	34284545	34284745	+	753.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010378, intron 1 of 4)	intron (NM_010378, intron 1 of 4)	3126.0	NM_010378	14960.0	Mm.235338	NM_010378	ENSMUSG00000036594	H2-Aa	Aalpha|H-2Aa|H2Aa|I-Aalpha|IAalpha|Ia-1|Ia1	histocompatibility 2, class II antigen A, alpha	protein-coding	1.37943895919398	0.484718668032636	0.475219873532373	0.467823535573336	0.881441243764222	0.486846769097533	0.983602440217446	1.16399975490675	0.52812951947425	0.763377910377026	1
Merged-chr11-101551992-4	chr11	101551909	101552109	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252223)	promoter-TSS (NM_001252223)	-54.0	NM_009764	12189.0	Mm.244975	NM_009764	ENSMUSG00000017146	Brca1	-	breast cancer 1, early onset	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-100638487-1	chr15	100638387	100638587	+	673.0	f0_balb.idr	Intergenic	Intergenic	-1547.0	NM_001033872	207818.0	Mm.26282	NM_174992	ENSMUSG00000053559	Smagp	-	small cell adhesion glycoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-43931503-2	chr1	43931403	43931603	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-2491.0	NM_001310540	22019.0	Mm.401675	NM_009418	ENSMUSG00000041763	Tpp2	TPP-2|TppII	tripeptidyl peptidase II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-38015750-4	chr19	38015637	38015837	+	992.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302140, intron 3 of 53)	intron (NM_001302140, intron 3 of 53)	27840.0	NM_001099634	226101.0	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding	4.71047867461692	5.6658164633614	5.3235541530993	5.42680686569657	5.5768458612312	5.3464940493455	6.10937244757745	6.03400864397927	0.555278370679089	0.0644076788223586	0.379053301427727
Merged-chr9-113780256-4	chr9	113780166	113780366	+	969.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114347, intron 6 of 39)	Lx9|LINE|L1	-13064.0	NM_001286603	76499.0	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-125782581-4	chr8	125782452	125782652	+	810.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175561, intron 25 of 33)	intron (NM_175561, intron 25 of 33)	48349.0	NM_001310688	66566.0	Mm.25296	NM_025636	ENSMUSG00000031851	Ntpcr	2310079N02Rik|AI449709	nucleoside-triphosphatase, cancer-related	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-166631938-4	chr1	166631855	166632055	+	907.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164312, intron 8 of 8)	intron (NM_001164312, intron 8 of 8)	15738.0	NM_001164312	226604.0	Mm.330032	NM_001164312	ENSMUSG00000051081	Gm4847	EG226604|Fmo12	predicted gene 4847	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-144240162-3	chr1	144240050	144240250	+	726.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	8954.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-72692372-2	chr7	72692272	72692472	+	581.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-385777.0	NM_001024703	244049.0	Mm.217412	NM_001024703	ENSMUSG00000032776	Mctp2	Gm489	multiple C2 domains, transmembrane 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-33993976-2	chr17	33993967	33994167	+	913.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6266.0	NM_001001892	14972.0	Mm.422886	NM_001001892	ENSMUSG00000061232	H2-K1	H-2K|H-2K(d)|H2-K|K-f	histocompatibility 2, K1, K region	protein-coding	2.16926254780574	2.96005343356667	2.58467477540052	2.85769895611005	2.06192994083276	2.45430235418701	2.49460749703349	1.38749760032766	-1.10181584408209	0.197580991109079	0.679718702856214
Merged-chr16-21909114-3	chr16	21909001	21909201	+	856.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172821, intron 7 of 12)	intron (NM_172821, intron 7 of 12)	17132.0	NM_172821	71751.0	Mm.420837	NM_172821	ENSMUSG00000033618	Map3k13	C130026N12Rik|LZK	mitogen-activated protein kinase kinase kinase 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-65938475-2	chr18	65938375	65938575	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013833, intron 1 of 2)	CpG	614.0	NM_013833	19434.0	Mm.431047	NM_013833	ENSMUSG00000024518	Rax	7530406A22Rik|E130303K03Rik|Rx|ey-1|ey1	retina and anterior neural fold homeobox	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44835612-4	chr7	44835507	44835707	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010215)	promoter-TSS (NM_010215)	-681.0	NM_010215	14204.0	Mm.2565	NM_010215	ENSMUSG00000074141	Il4i1	Fig1|Fig1-ps|LAAO|LAO	interleukin 4 induced 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-7879530-2	chr9	7879430	7879630	+	591.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6360.0	NM_007464	11796.0	Mm.2026	NM_007464	ENSMUSG00000032000	Birc3	AW107670|Api1|Api2|Birc2|C-IAP2|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF49|cIAP-1|cIAP-2|cIAP1|cIAP2	baculoviral IAP repeat-containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167350620-4	chr2	167350513	167350713	+	870.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1435.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-77523419-2	chr15	77523319	77523519	+	863.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9896.0	NM_175391	108956.0	Mm.86391	NM_175391	ENSMUSG00000044309	Apol7c	2210421G13Rik	apolipoprotein L 7c	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-151722092-2	chr1	151721992	151722192	+	556.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32635.0	NR_151474	102640772.0		NR_151473	ENSMUSG00000100594	2810414N06Rik	-	RIKEN cDNA 2810414N06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47924538-4	chr17	47924333	47924533	+	990.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001110824, exon 1 of 17)	5' UTR (NM_001110824, exon 1 of 17)	199.0	NM_028767	74123.0	Mm.240062	NM_028767	ENSMUSG00000023991	Foxp4	1200010K03Rik|2310007G05Rik|mFKHLA	forkhead box P4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-136798802-1	chr7	136798702	136798902	+	608.0	f0_balb.idr	Intergenic	Intergenic	-88198.0	NR_046021	621677.0	Mm.207290	NR_046021	ENSMUSG00000110101	Gm6249	EG621677	predicted gene 6249	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117067174-4	chr8	117067079	117067279	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029686, intron 6 of 42)	intron (NM_029686, intron 6 of 42)	15270.0	NM_029686	76645.0	Mm.159753	NM_029686	ENSMUSG00000034416	Pkd1l2	1700126L06Rik	polycystic kidney disease 1 like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171620368-2	chr1	171620268	171620468	+	704.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12958.0	NM_001277968	17085.0	Mm.560	NM_008534	ENSMUSG00000004707	Ly9	AI893573|CD229|Lgp100|Ly-9|SLAMF3|T100	lymphocyte antigen 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-124655704-1	chr10	124655604	124655804	+	597.0	f1_c57bl6.idr	Intergenic	Lx3B|LINE|L1	186630.0	NR_028310	75030.0	Mm.159403	NR_028310	ENSMUSG00000112364	4930503E24Rik	-	eukaryotic translation initiation factor 3, subunit I pseudogene	pseudo	0.131829920920145	-0.84274317456058	-0.847012611985927	-0.850224284367043	-0.854830442168588	-0.841655105569256	-0.846101531958247	-0.849660411495548	-3.79727200237357	0.176615732687454	1
Merged-chr11-79612400-2	chr11	79612300	79612500	+	541.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_003283, intron 2 of 2)	intron (NR_003283, intron 2 of 2)	10763.0	NR_003283	790912.0	Mm.447313	NR_003283	ENSMUSG00000087434	Rab11fip4os1	Gm11202	RAB11 family interacting protein 4 (class II), opposite strand 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-29393689-6	chr17	29393536	29393736	+	950.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32722.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-82362594-3	chr3	82362488	82362688	+	853.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356457, intron 3 of 13)	ORR1D2|LTR|ERVL-MaLR	4401.0	NM_001356457	213582.0	Mm.271269	NM_001081230	ENSMUSG00000033900	Map9	5033421J10Rik|5330427D05Rik|ASAP|Mtap9	microtubule-associated protein 9	protein-coding	4.13428425520977	5.64238393174728	4.13828489133114	4.29722650717985	2.6667734702286	3.68176625591942	3.97050703711908	3.52730783097202	-1.57195782307914	0.00281017419187966	0.0432632206426503
Merged-chr6-48554795-4	chr6	48554705	48554905	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177736)	promoter-TSS (NM_177736)	6.0	NM_177736	243371.0	Mm.290764	NM_177736	ENSMUSG00000073096	Lrrc61	BC027309	leucine rich repeat containing 61	protein-coding	2.71605181591787	3.60059239796066	4.66154740457254	3.10361612744635	2.15947219478472	2.00415998811125	4.18964746151462	3.47283551706712	-0.683141927960561	0.355090469866935	0.853659667510465
Merged-chr16-95699954-2	chr16	95699854	95700054	+	781.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2453.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-77841679-4	chr18	77841561	77841761	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013831, intron 2 of 14)	L1_Mur3|LINE|L1	-45271.0	NR_152167	619308.0	Mm.490456	NM_001033812		F830208F22Rik	-	RIKEN cDNA F830208F22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-11005200-3	chr4	11005123	11005323	+	704.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175175, intron 1 of 1)	PB1D10|SINE|Alu	2396.0	NM_175175	71801.0	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90524025-2	chr2	90523925	90524125	+	607.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	-44851.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-135295775-3	chr6	135295675	135295875	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14609.0	NM_029595	76400.0	Mm.293018	NM_029595	ENSMUSG00000047104	Pbp2	1700023A18Rik|AI326308|Pebp-2|Pebp2	phosphatidylethanolamine binding protein 2	protein-coding	1.6439889280437	1.147906750914	1.11393774197135	1.08645740316791	2.49764944146911	2.33133002939954	2.80026934464398	2.77754275452951	3.93009057798888	0.000788280315072666	0.0159580211815104
Merged-chr9-9500902-2	chr9	9500802	9501002	+	654.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17B|LTR|ERVK	-261889.0	NM_027823	71544.0	Mm.334955	NM_027823	ENSMUSG00000050730	Arhgap42	9030420J04Rik|BE136619	Rho GTPase activating protein 42	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-69448586-2	chr12	69448486	69448686	+	973.900024	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26964.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-50227291-4	chr11	50227153	50227353	+	903.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145926, intron 1 of 14)	intron (NM_145926, intron 1 of 14)	1918.0	NM_145926	103534.0	Mm.86759	NM_145926	ENSMUSG00000036620	Mgat4b	AA407995|GnTIVb	mannoside acetylglucosaminyltransferase 4, isoenzyme B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-116002609-2	chr6	116002509	116002709	+	801.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7604.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-126876362-2	chr10	126876262	126876462	+	589.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026858, intron 5 of 5)	intron (NM_026858, intron 5 of 5)	25009.0	NM_026858	68876.0	Mm.276769	NM_026858	ENSMUSG00000025436	Atp23	1110068E08Rik|2410012H02Rik|Xrcc6bp1	ATP23 metallopeptidase and ATP synthase assembly factor homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-116630200-1	chr4	116630100	116630300	+	1000.0	f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-2249.0	NM_016777	50927.0	Mm.257181	NM_016777	ENSMUSG00000028693	Nasp	5033430J04Rik|AI131596|AI317140|D4Ertd767e|Epcs32|Nasp-T	nuclear autoantigenic sperm protein (histone-binding)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-75556915-4	chr3	75556774	75556974	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019745)	promoter-TSS (NM_019745)	-22.0	NM_019745	56426.0	Mm.316473	NM_019745	ENSMUSG00000027835	Pdcd10	2410003B13Rik|Ccm3|Tfa15|Tfar15	programmed cell death 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-90422696-4	chr6	90422593	90422793	+	889.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173775, intron 2 of 16)	intron (NM_173775, intron 2 of 16)	5787.0	NM_173775	243538.0	Mm.386876	NM_173775	ENSMUSG00000048794	Cfap100	AW048498|C030041G11Rik|C230069K22Rik|Ccdc37	cilia and flagella associated protein 100	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139313708-2	chr5	139313608	139313808	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172723, intron 1 of 10)	intron (NM_172723, intron 1 of 10)	11756.0	NM_172723	231821.0	Mm.297819	NM_172723	ENSMUSG00000056413	Adap1	4930431P11Rik|Centa1|GC1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35578409-4	chr17	35578322	35578522	+	753.862488	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10937.0	NM_175148	69542.0	Mm.265291	NM_175148	ENSMUSG00000039269	2300002M23Rik	Stg|emprin	RIKEN cDNA 2300002M23 gene	protein-coding	2.87970352691357	4.16427220359867	1.802365100466	2.85021216422432	3.27154847227208	2.95317223243152	1.81810345278429	2.96583054514554	-0.573203105486413	0.470560341246977	0.925762173358338
Merged-chr11-85234607-3	chr11	85234502	85234702	+	978.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028329)	promoter-TSS (NR_028329)	518.0	NM_025825	66884.0	Mm.271997	NM_025825	ENSMUSG00000018481	Appbp2	1300003O07Rik|AI465480|PAT1	amyloid beta precursor protein (cytoplasmic tail) binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-55098495-4	chr10	55098389	55098589	+	833.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	-1008428.0	NM_001163833	73390.0	Mm.181475	NM_133751	ENSMUSG00000047669	Msl3l2	1700060H10Rik	MSL3 like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-24390026-2	chr5	24389926	24390126	+	542.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001002897, intron 4 of 13)	Charlie1|DNA|hAT-Charlie	2117.0	NM_001002897	213948.0	Mm.332252	NM_001002897	ENSMUSG00000038295	Atg9b	Apg912|Apg9l2|Apgdc2|Gm574|Nos3as|eONE|sONE	autophagy related 9B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-13256492-7	chr16	13256408	13256608	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001122667)	promoter-TSS (NM_001122667)	27.0	NM_001122667	239719.0	Mm.270643	NM_153588	ENSMUSG00000009569	Mkl2	Gt4-1|MRTF-B|Mrtfb|mKIAA1243	MKL/myocardin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-44518386-4	chr13	44518269	44518469	+	999.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	78642.0	NR_045489	69491.0	Mm.392410	NR_045489	ENSMUSG00000098144	1700029N11Rik	-	RIKEN cDNA 1700029N11 gene	ncRNA	4.86114199218619	4.78327360792419	4.53292292131976	5.31679857467032	4.22561576720147	4.35123622635544	4.8911152391595	5.48806316817279	-0.0837162742227517	0.82927241639892	0.998431161219273
Merged-chr7-44892582-8	chr7	44892477	44892677	+	932.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029365)	promoter-TSS (NM_029365)	-153.0	NM_001331206	75613.0	Mm.157778	NM_029365	ENSMUSG00000002968	Med25	2610034E13Rik|2610529E18Rik|ESTM2	mediator complex subunit 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-55451273-2	chr12	55451173	55451373	+	756.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	41374.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-37919228-2	chr19	37919128	37919328	+	604.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001302140, intron 43 of 53)	intron (NM_001302140, intron 43 of 53)	124349.0	NM_001099634	226101.0	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-94908021-2	chr13	94907921	94908121	+	574.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR27|LTR|ERVK	32394.0	NM_011021	18420.0	Mm.42051	NM_011021	ENSMUSG00000021685	Otp	-	orthopedia homeobox	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-139252159-4	chr4	139252058	139252258	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037761, intron 2 of 9)	intron (NM_001037761, intron 2 of 9)	58047.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	4.24151560936234	4.35930357762718	3.55471520525399	3.45416519438968	3.51630453505051	3.32053148769775	2.04711624822923	3.30063082959888	-1.19595809781766	0.040821482270413	0.288475510568248
Merged-chr6-137755860-2	chr6	137755748	137755948	+	599.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172733, intron 1 of 8)	intron (NM_172733, intron 1 of 8)	1271.0	NM_172733	232449.0	Mm.29181	NM_172733	ENSMUSG00000030225	Dera	2010002D22Rik|2500002K03Rik|DEOC	deoxyribose-phosphate aldolase (putative)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-50296624-4	chr2	50296540	50296740	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040361)	promoter-TSS (NR_040361)	161.0	NM_001348200	109129.0	Mm.29214	NM_133839	ENSMUSG00000026766	Mmadhc	2010311D03Rik|AI314967|CblD	methylmalonic aciduria (cobalamin deficiency) cblD type, with homocystinuria	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167779617-2	chr2	167779517	167779717	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	88440.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118134123-2	chr11	118134023	118134223	+	572.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4904.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-122875394-2	chr6	122875294	122875494	+	688.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026267, intron 1 of 7)	intron (NM_026267, intron 1 of 7)	837.0	NM_026267	67602.0	Mm.288114	NM_026267	ENSMUSG00000030327	Necap1	1200016B17Rik|AI747569|mFLJ00061	NECAP endocytosis associated 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-126428585-3	chr4	126428511	126428711	+	768.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153402, intron 1 of 18)	(T)n|Simple_repeat|Simple_repeat	931.0	NM_153402	214150.0	Mm.440915	NM_153402	ENSMUSG00000028842	Ago3	AW048688|C130014L07Rik|Eif2c3	argonaute RISC catalytic subunit 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-50291896-4	chr6	50291806	50292006	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30137.0	NM_018769	54722.0	Mm.248361	NM_018769	ENSMUSG00000029821	Gsdme	2310037D07Rik|4932441K13Rik|Dfna5|Dfna5h|EG14210|Fin15	gasdermin E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-52435778-1	chr4	52435678	52435878	+	552.0	f1_balb.idr	intron (NR_045175, intron 1 of 1)	Lx|LINE|L1	3186.0	NR_045175	72648.0	Mm.391869	NR_045175	ENSMUSG00000085763	Smc2os	2700081L22Rik	structural maintenance of chromosomes 2, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-75844424-4	chr13	75844342	75844542	+	713.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053108, intron 1 of 2)	intron (NM_053108, intron 1 of 2)	4556.0	NM_053108	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	-1.50561175621786	-1.47331375025452	-1.02203377115094	-1.49110398925286	-1.50334449591826	-1.47119716082604	-1.48086985756939	-1.48966786617048	-2.07776723614574	0.550394407909386	1
Merged-chr3-9339966-1	chr3	9339866	9340066	+	563.0	f1_balb.idr	Intergenic	Intergenic	-63112.0	NR_015499	320088.0	Mm.212908	NR_015499	ENSMUSG00000097365	C030034L19Rik	A130044O20Rik	RIKEN cDNA C030034L19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-80919279-4	chr8	80919158	80919358	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38739.0	NM_001301298	14388.0	Mm.277409	NM_021356	ENSMUSG00000031714	Gab1	AA408973|AW107238	growth factor receptor bound protein 2-associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-39409725-2	chr18	39409625	39409825	+	700.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_008173)	TTS (NM_008173)	77520.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100502748-3	chr7	100502636	100502836	+	970.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_153527)	TTS (NM_153527)	9378.0	NM_011671	22228.0	Mm.171378	NM_011671	ENSMUSG00000033685	Ucp2	Slc25a8|UCP 2|UCPH	uncoupling protein 2 (mitochondrial, proton carrier)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-19012057-6	chr10	19011803	19012003	+	965.805542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166402)	promoter-TSS (NM_001166402)	60.0	NM_001166402	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	2.12386446076698	1.16421760010232	2.47753205178932	2.24438923423028	1.46994212716795	1.63523221560671	1.386269599008	1.95736019245952	-1.29727030336234	0.223366350616775	0.714791840691861
Merged-chr2-143081910-4	chr2	143081797	143081997	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_020595)	TTS (NM_020595)	3504.0	NM_020595	57329.0	Mm.157751	NM_020595	ENSMUSG00000027416	Otor	CDRAP|Fdp|MIA|MIAL	otoraplin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69320722-2	chr11	69320622	69320822	+	796.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172560, intron 4 of 18)	intron (NM_172560, intron 4 of 18)	3151.0	NM_172560	216846.0	Mm.28774	NM_172560	ENSMUSG00000032782	Cntrob	9830165K03Rik|Lip8|Nip2	centrobin, centrosomal BRCA2 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-103980093-2	chr3	103979993	103980193	+	580.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013629, intron 3 of 18)	intron (NM_013629, intron 3 of 18)	-11777.0	NR_030676	100125931.0	Mm.400392	NR_030676	ENSMUSG00000089998	Phtf1os	A130049A11Rik	putative homeodomain transcription factor 1, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-58637787-2	chr13	58637687	58637887	+	701.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26910.0	NM_022317	114304.0	Mm.18188	NM_022317	ENSMUSG00000021553	Slc28a3	Cnt3	solute carrier family 28 (sodium-coupled nucleoside transporter), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-13589923-4	chr1	13589811	13590011	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028173)	promoter-TSS (NM_028173)	-1.0	NM_028173	72265.0	Mm.28765	NM_028173	ENSMUSG00000025935	Tram1	1810049E02Rik|TRAMP	translocating chain-associating membrane protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44734538-6	chr9	44734481	44734681	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153537, intron 1 of 21)	intron (NM_153537, intron 1 of 21)	617.0	NM_153537	102693.0	Mm.28639	NM_153537	ENSMUSG00000048537	Phldb1	AU041016|D330037A14Rik|Ll5a	pleckstrin homology like domain, family B, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-65953956-4	chr3	65953857	65954057	+	992.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019937, intron 3 of 10)	intron (NM_019937, intron 3 of 10)	4292.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	2.08055548990839	3.10103253458123	4.0640886176841	3.18373793387111	2.95629798847092	1.92944190142038	4.00082098328183	2.39737847478133	-0.350978033642364	0.649819556373287	0.985422869512088
Merged-chr4-130808028-2	chr4	130807951	130808151	+	826.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011520, intron 1 of 4)	intron (NM_011520, intron 1 of 4)	15514.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4213595-4	chr19	4213495	4213695	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310038)	promoter-TSS (NM_001310038)	-643.0	NR_132308	105948585.0	Mm.32518	NR_132308		Gm45928	Clcf1-pold4	predicted gene, 45928	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-29096554-2	chr17	29096454	29096654	+	585.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_007669, intron 1 of 2)	intron (NM_007669, intron 1 of 2)	2785.0	NM_007669	12575.0	Mm.195663	NM_007669	ENSMUSG00000023067	Cdkn1a	CAP20|CDKI|CIP1|Cdkn1|P21|SDI1|Waf1|mda6|p21Cip1|p21WAF	cyclin-dependent kinase inhibitor 1A (P21)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165493340-4	chr2	165493250	165493450	+	993.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001007581)	promoter-TSS (NM_001007581)	-36.0	NM_001007581	381406.0	Mm.330785	NM_001007581	ENSMUSG00000039725	Trp53rka	2810408M09Rik	transformation related protein 53 regulating kinase A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-75234826-4	chr1	75234731	75234931	+	996.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1592.0	NM_001159884	56812.0	Mm.489660	NM_020266	ENSMUSG00000026203	Dnajb2	2700059H22Rik|Dnajb10|Hsj1|mDj8	DnaJ heat shock protein family (Hsp40) member B2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-123266047-4	chr6	123265940	123266140	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163161, intron 2 of 5)	L1ME3A|LINE|L1	3933.0	NM_010819	17474.0	Mm.441101	NM_010819	ENSMUSG00000030144	Clec4d	Clecsf8|Mpcl|mcl	C-type lectin domain family 4, member d	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117362532-4	chr8	117362443	117362643	+	906.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028941, intron 1 of 20)	intron (NM_028941, intron 1 of 20)	13373.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-184729439-4	chr1	184729331	184729531	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008250, intron 3 of 3)	intron (NM_008250, intron 3 of 3)	3062.0	NM_008250	15284.0	Mm.1347	NM_008250	ENSMUSG00000039377	Hlx	Hlx1	H2.0-like homeobox	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-32647448-4	chr11	32647366	32647566	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271349, intron 1 of 11)	intron (NM_001271349, intron 1 of 11)	4911.0	NM_001271347	103583.0	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	3.43417563792497	3.85119533137662	4.1696665432331	2.80122986769154	4.04239964314599	4.15739974779153	4.19980256305717	3.38888516451209	0.469026019877726	0.368631897387515	0.862916999449085
Merged-chr7-131801539-3	chr7	131801459	131801659	+	898.3444820000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-164901.0	NM_173410	233919.0	Mm.208740	NM_173410	ENSMUSG00000040125	Gpr26	9630036A11Rik|A730021D22	G protein-coupled receptor 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-63943474-3	chr5	63943376	63943576	+	833.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145923, intron 1 of 6)	MER44B|DNA|TcMar-Tigger	25421.0	NM_145923	100532.0	Mm.243632	NM_145923	ENSMUSG00000047881	Rell1	AA536743	RELT-like 1	protein-coding	2.07584157360581	1.30365600455415	1.26349637048957	1.71593614032977	2.74279902929595	3.23038130581195	2.4159905621208	2.95782471397872	2.84865856977436	0.00233081209340106	0.0373864752628688
Merged-chr1-143655889-2	chr1	143655789	143655989	+	631.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145991, intron 10 of 16)	PB1D10|SINE|Alu	15192.0	NM_020025	26878.0	Mm.285580	NM_020025	ENSMUSG00000033849	B3galt2	-	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-55469274-3	chr16	55469165	55469365	+	744.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25466.0	NR_039578	100628589.0		NR_039578	ENSMUSG00000093292	Mir5118	mmu-mir-5118|mu-mir-5118	microRNA 5118	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-35038151-2	chr12	35038051	35038251	+	643.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2B|LINE|L1	-9038.0	NM_001014973	217463.0	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	-0.139392268561389	-0.122753019351614	0.744684416786837	0.0392802799204778	0.0147078014860379	-0.121529858055761	0.218515484237184	-0.13165712264701	-1.47072321353217	0.500418150163735	1
Merged-chr19-6276723-4	chr19	6276618	6276818	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010119)	promoter-TSS (NM_010119)	-178.0	NM_010119	13660.0	Mm.30169	NM_010119	ENSMUSG00000024772	Ehd1	AA409636|Past1|RME-1	EH-domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-99180333-2	chr10	99180233	99180433	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153333, intron 11 of 12)	intron (NR_153333, intron 11 of 12)	72198.0	NM_015737	14426.0	Mm.314	NM_015737	ENSMUSG00000090035	Galnt4	AV011803	polypeptide N-acetylgalactosaminyltransferase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-23962498-2	chr16	23962398	23962598	+	612.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18785.0	NM_001348026	12053.0	Mm.347398	NM_009744	ENSMUSG00000022508	Bcl6	Bcl5	B cell leukemia/lymphoma 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-5101801-2	chr6	5101701	5101901	+	802.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_181595, intron 7 of 15)	intron (NM_181595, intron 7 of 15)	92145.0	NM_011134	18979.0	Mm.237657	NM_011134	ENSMUSG00000002588	Pon1	Pon	paraoxonase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-86145847-1	chr16	86145747	86145947	+	719.0	f1_balb.idr	Intergenic	Lx5|LINE|L1	-244722.0	NM_011782	23794.0	Mm.112933	NM_011782	ENSMUSG00000022894	Adamts5	9530092O11Rik|ADAM-TS5|ADAMTS1|ADAMTS11|ADMP-2|AI481094|ASMP-2	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 5 (aggrecanase-2)	protein-coding	-2.05752322593321	-2.15521190974092	-2.16307242109104	-2.16952927915413	-2.17938029103484	-2.15350850414045	-2.16129297361887	-2.16837350464794	-0.683654500252594	0.846597994014493	1
Merged-chr13-23700955-4	chr13	23700860	23701060	+	932.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2502.0	NM_178208	319155.0	Mm.261662	NM_178208	ENSMUSG00000060678	Hist1h4c	-	histone cluster 1, H4c	protein-coding	4.31548742517961	3.94486677632017	4.02720782730979	4.43995476409008	3.87294553383524	4.37524648662843	3.67854465369397	3.9373848088465	-0.295620925789734	0.497432352832148	0.936897994490085
Merged-chr12-52284426-4	chr12	52284323	52284523	+	913.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029760, intron 7 of 10)	intron (NM_029760, intron 7 of 10)	186677.0	NM_029760	76826.0	Mm.244781	NM_029760	ENSMUSG00000035142	Nubpl	2410170E07Rik	nucleotide binding protein-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-28418309-2	chr13	28418209	28418409	+	708.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	275825.0	NM_023746	28078.0	Mm.155058	NM_023746	ENSMUSG00000017064	Prl5a1	1600013P04Rik|D13Wsu14e|Ghd24|PLP-L|Prlpl	prolactin family 5, subfamily a, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81176059-2	chr10	81175959	81176159	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007907)	promoter-TSS (NM_007907)	-572.0	NM_007907	13629.0	Mm.2903	NM_007907	ENSMUSG00000034994	Eef2	Ef-2	eukaryotic translation elongation factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-143066805-2	chr7	143066705	143066905	+	626.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_133655, intron 6 of 7)	intron (NM_133655, intron 6 of 7)	-2563.0	NM_020285	56844.0	Mm.139675	NM_020285	ENSMUSG00000045752	Tssc4	AA241958|ESTM671070	tumor-suppressing subchromosomal transferable fragment 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44419401-2	chr9	44419301	44419501	+	750.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1332.0	NM_201372	382073.0	Mm.259573	NM_201372	ENSMUSG00000043923	Ccdc84	D630044F24Rik|Gm1114	coiled-coil domain containing 84	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-23778725-2	chr17	23778625	23778825	+	954.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357140, intron 2 of 2)	intron (NM_001357140, intron 2 of 2)	-7123.0	NM_001357994	224613.0	Mm.328835	NM_153791	ENSMUSG00000040097	Flywch1	E030034P13Rik|mKIAA1552	FLYWCH-type zinc finger 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-66817638-4	chr1	66817431	66817631	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001122738)	promoter-TSS (NM_001122738)	64.0	NM_177645	68691.0	Mm.240912	NM_177645	ENSMUSG00000026004	Kansl1l	1110028C15Rik|1190030G24|AI427598|C430010P07Rik|mKIAA4189	KAT8 regulatory NSL complex subunit 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-65471472-2	chr16	65471363	65471563	+	583.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49166.0	NM_008849	18736.0	Mm.355440	NM_008849	ENSMUSG00000004842	Pou1f1	GHF-1|Hmp1|Pit-1|Pit1|Pit1-rs1|dw|dwarf	POU domain, class 1, transcription factor 1	protein-coding	0.59701112076437	0.239371927359227	0.23290172075419	0.947704260588042	0.494692221489431	0.240829084838277	0.234329634871293	0.769933049499471	-0.544812808830937	0.77935538785837	1
Merged-chr16-19761121-2	chr16	19761021	19761221	+	970.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_054052, intron 2 of 3)	CpG	887.0	NM_001159407	108105.0	Mm.33935	NM_054052	ENSMUSG00000022686	B3gnt5	beta3GnT5	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-102293983-2	chr11	102293883	102294083	+	635.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001098836, intron 4 of 12)	intron (NM_001098836, intron 4 of 12)	2646.0	NM_001098836	217218.0	Mm.390381	NM_001098836	ENSMUSG00000059995	Atxn7l3	E030022H21Rik	ataxin 7-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-142101108-1	chr4	142101008	142101208	+	625.0	f1_balb.idr	Intergenic	URR1B|DNA|hAT-Charlie	-16804.0	NM_145402	214359.0	Mm.27587	NM_145402	ENSMUSG00000040616	Tmem51	BC003277	transmembrane protein 51	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-84020742-4	chr12	84020627	84020827	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11225.0	NM_012006	26897.0	Mm.1978	NM_012006	ENSMUSG00000072949	Acot1	ACH2|CTE-1|CTE-I|Cte1|D12Ucla1	acyl-CoA thioesterase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-115429705-4	chr8	115429600	115429800	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	277194.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-21281067-2	chr2	21280967	21281167	+	861.416626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	75343.0	NM_177588	208967.0	Mm.268841	NM_177588	ENSMUSG00000048550	Thnsl1	AW413632	threonine synthase-like 1 (bacterial)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128367480-2	chr10	128367380	128367580	+	838.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081040, intron 2 of 4)	B1_Mur2|SINE|Alu	2557.0	NM_001081040	210582.0	Mm.296876	NM_001081040	ENSMUSG00000039914	Coq10a	Gm1	coenzyme Q10A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129276657-4	chr4	129276548	129276748	+	863.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10973.0	NM_023485	68828.0	Mm.132243	NM_023485	ENSMUSG00000001333	Sync	1110057H03Rik|SNIP4	syncoilin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-32175376-2	chr16	32175276	32175476	+	611.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4424.0	NM_001033539	328660.0	Mm.441006	NM_001033539	ENSMUSG00000075269	Bex6	B020003O03Rik	brain expressed family member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45704908-4	chr7	45704817	45705017	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016974)	promoter-TSS (NM_016974)	-330.0	NM_016974	13170.0	Mm.24222	NM_016974	ENSMUSG00000059824	Dbp	-	D site albumin promoter binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-25016393-4	chr17	25016287	25016487	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_134126, exon 1 of 30)	5' UTR (NM_134126, exon 1 of 30)	301.0	NM_134126	106633.0	Mm.32802	NM_134126	ENSMUSG00000024169	Ift140	AI661311|Tce5|Wdtc2|mKIAA0590	intraflagellar transport 140	protein-coding	4.34386052891529	4.0084339135431	3.15309692760215	4.89490680384422	4.09571780681963	4.71850115043295	4.62224407749265	4.98080021745103	0.497112636253633	0.274292631360104	0.778373460515263
Merged-chr4-16088542-4	chr4	16088481	16088681	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74693.0	NM_145950	209212.0	Mm.46455	NM_145950	ENSMUSG00000041153	Osgin2	BC010311|C230027H09Rik	oxidative stress induced growth inhibitor family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-117032182-2	chr13	117032082	117032282	+	744.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-6666.0	NM_001081009	52552.0	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-50088919-4	chr18	50088824	50089024	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134131, intron 1 of 1)	intron (NM_134131, intron 1 of 1)	-35262.0	NR_155293	102635912.0	Mm.440627	NR_155293		C030005K06Rik	-	RIKEN cDNA C030005K06 gene	ncRNA	1.7676822427434	2.38321392847947	1.2954576261829	2.23636687730997	2.0328451788456	2.70082994343147	1.92435600073575	2.34988344024969	0.726956185009997	0.4441398597454	0.912265842646861
Merged-chr11-101143821-4	chr11	101143695	101143895	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12089.0	NM_134028	103768.0	Mm.142348	NM_134028	ENSMUSG00000045007	Tubg2	AI504772|Tubgl	tubulin, gamma 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166009664-3	chr2	166009476	166009676	+	874.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008679, intron 1 of 22)	intron (NM_008679, intron 1 of 22)	16939.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	0.251300855486774	0.766974859584917	0.264992567736204	0.259849873076877	0.909586707818437	0.776702295879637	0.266461811405879	0.571412382760263	1.6377144035885	0.398527579450922	1
Merged-chr2-13479808-3	chr2	13479711	13479911	+	838.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081084, intron 6 of 66)	intron (NM_001081084, intron 6 of 66)	12065.0	NM_001081084	65969.0	Mm.313915	NM_001081084	ENSMUSG00000026726	Cubn	AA408369|AL022750|D2Wsu88e	cubilin (intrinsic factor-cobalamin receptor)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-52307454-4	chr14	52307354	52307554	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F1|LTR|ERVL-MaLR	-2330.0	NM_019721	56335.0	Mm.271759	NM_019721	ENSMUSG00000022160	Mettl3	2310024F18Rik|M6A|Spo8	methyltransferase like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43381061-1	chr4	43380961	43381161	+	872.0	f1_balb.idr	promoter-TSS (NM_001037709)	promoter-TSS (NM_001037709)	-921.0	NM_001037709	100213.0	Mm.235730	NM_199057	ENSMUSG00000035969	Rusc2	AI840675|mKIAA0375	RUN and SH3 domain containing 2	protein-coding	1.17488181357387	1.92053315468046	2.61934907869351	2.18458692020061	2.08762935907017	2.09047260878035	2.47006945139839	1.45503740892237	-0.0201533179555306	0.984262891860923	0.998431161219273
Merged-chr15-84968894-4	chr15	84968781	84968981	+	968.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033273, intron 1 of 9)	intron (NM_001033273, intron 1 of 9)	-17258.0	NR_037206	100526461.0		NR_037206	ENSMUSG00000080441	Mir1249	mir-1249|mmu-mir-1249	microRNA 1249	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-73550494-1	chr7	73550394	73550594	+	577.0	f0_c57.idr	intron (NR_037569, intron 3 of 4)	intron (NR_037569, intron 3 of 4)	7901.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-127476475-1	chr2	127476375	127476575	+	725.0	f1_balb.idr	intron (NM_019789, intron 2 of 8)	intron (NM_019789, intron 2 of 8)	6024.0	NM_001111331	56461.0	Mm.315292	NM_019789	ENSMUSG00000079056	Kcnip3	4933407H12Rik|AI413860|Csen|DREAM|KChIP3|R74849	Kv channel interacting protein 3, calsenilin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-173553981-2	chr2	173553881	173554081	+	695.625	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24360.0	NM_001199955	70065.0	Mm.425115	NM_027303	ENSMUSG00000027517	Ankrd60	1700019A24Rik|1700030G11Rik	ankyrin repeat domain 60	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-36283221-4	chr15	36283103	36283303	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013923)	promoter-TSS (NM_013923)	-56.0	NM_001357631	30945.0	Mm.5181	NM_013923	ENSMUSG00000022280	Rnf19a	AA032313|Dorfin|Rnf19|UIP117|Ubce7ip2|XYbp	ring finger protein 19A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-184536640-4	chr1	184536543	184536743	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040472, intron 2 of 5)	intron (NR_040472, intron 2 of 5)	21048.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4541960-4	chr16	4541855	4542055	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	17765.0	NM_031182	83383.0	Mm.273210	NM_031182	ENSMUSG00000005718	Tfap4	AI642933|AP-4|D930048N17Rik|Tcfap4|bHLHc41	transcription factor AP4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34289903-2	chr17	34289792	34289992	+	652.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-2121.0	NM_010378	14960.0	Mm.235338	NM_010378	ENSMUSG00000036594	H2-Aa	Aalpha|H-2Aa|H2Aa|I-Aalpha|IAalpha|Ia-1|Ia1	histocompatibility 2, class II antigen A, alpha	protein-coding	2.95025203520199	3.11016596089404	3.00745450564273	2.92407132565862	3.48964332784331	2.45442723052019	3.37771021614304	2.72291123051608	0.172436968930727	0.789920640801039	0.998431161219273
Merged-chr19-45046791-6	chr19	45046645	45046845	+	815.944458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001178013)	promoter-TSS (NM_001178013)	-831.0	NM_001362380	94280.0	Mm.36169	NM_053197	ENSMUSG00000025212	Sfxn3	-	sideroflexin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-40781766-1	chr9	40781666	40781866	+	1000.0	f1_balb.idr	intron (NM_133733, intron 6 of 6)	MTD|LTR|ERVL-MaLR	-19507.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	2.60999186008315	3.34768808597025	3.23898636394312	3.06287255009861	3.01763622482174	3.37140524410667	2.96976504291421	3.24831060984964	0.124301924060908	0.838382588286892	0.998431161219273
Merged-chr3-68638462-2	chr3	68638362	68638562	+	951.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52182.0	NM_001159424	16159.0	Mm.103783	NM_008351	ENSMUSG00000027776	Il12a	IL-12p35|Il-12a|Ll12a|p35	interleukin 12a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98217138-4	chr11	98217023	98217223	+	967.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026952, intron 2 of 12)	intron (NM_026952, intron 2 of 12)	13818.0	NM_001109626	69131.0	Mm.260516	NM_026952	ENSMUSG00000003119	Cdk12	1810022J16Rik|AI646528|Crk7|Crkrs|D11Ertd752e|Pksc	cyclin-dependent kinase 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72217016-1	chr6	72216916	72217116	+	726.0	f0_balb.idr	intron (NM_153778, intron 2 of 2)	intron (NM_153778, intron 2 of 2)	18561.0	NM_153778	71093.0	Mm.87449	NM_153778	ENSMUSG00000037621	Atoh8	4933425C05Rik|Hath6|Math6|bHLHa21|okadin	atonal bHLH transcription factor 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-134495240-2	chr4	134495066	134495266	+	666.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1595.0	NM_001285845	71904.0	Mm.142343	NM_027995	ENSMUSG00000037348	Paqr7	2310021M12Rik|AV001994|BB007237|Mpra|PGLP|mPR	progestin and adipoQ receptor family member VII	protein-coding	1.33292027857841	0.699858704455071	0.686302317521092	1.61349449375954	1.52611330190683	1.55404487132256	0.689314749521835	0.677531009209535	0.136288942650894	0.931721592837406	0.998431161219273
Merged-chr18-35257161-2	chr18	35257061	35257261	+	926.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42137.0	NM_178005	107065.0	Mm.39900	NM_178005	ENSMUSG00000071862	Lrrtm2	AI851755|BB129880|C630011A14Rik|mKIAA0416	leucine rich repeat transmembrane neuronal 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-104306972-4	chr9	104306859	104307059	+	790.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_019807, exon 9 of 11)	exon (NM_019807, exon 9 of 11)	30763.0	NM_019807	56318.0	Mm.19941	NM_019807	ENSMUSG00000032561	Acpp	5'-NT|A030005E02Rik|FRAP|Lap|PAP|Ppal	acid phosphatase, prostate	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27368070-2	chr2	27367970	27368170	+	646.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_133905, intron 1 of 29)	intron (NR_133905, intron 1 of 29)	59538.0	NR_133905	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-78471124-4	chr10	78471003	78471203	+	967.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6155.0	NM_172134	216134.0	Mm.206159	NM_172134	ENSMUSG00000032788	Pdxk	2310036D04Rik|AA119688|C77999	pyridoxal (pyridoxine, vitamin B6) kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-28827916-3	chr19	28827821	28828021	+	827.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC5a|LINE|L1	-7245.0	NM_009199	20510.0	Mm.246670	NM_009199	ENSMUSG00000024935	Slc1a1	D130048G10Rik|EAAC1|EAAC2|EAAT3|MEAAC1	solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101081254-3	chr15	101081155	101081355	+	680.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26856.0	NM_001214911	668225.0	Mm.385011	NM_001214911	ENSMUSG00000095440	Fignl2	EG668225	fidgetin-like 2	protein-coding	2.32305044598902	1.92411705989725	2.51957215116026	2.07012725534108	1.59558446788306	2.21958648675359	1.87641074147555	1.48080232644133	-1.10580008563448	0.241389975719918	0.737728541910355
Merged-chr15-103273973-2	chr15	103273873	103274073	+	669.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019817, intron 1 of 8)	B1_Mur2|SINE|Alu	1085.0	NM_001357748	56447.0	Mm.29473	NM_019817	ENSMUSG00000060992	Copz1	5930435A22Rik|AA407760|D4Ertd360e	coatomer protein complex, subunit zeta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-83351466-2	chr15	83351366	83351566	+	922.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28|LTR|ERVL	-1219.0	NM_001357757	66251.0	Mm.258910	NM_025445	ENSMUSG00000054277	Arfgap3	0610009H19Rik|1810004P07Rik|1810035F16Rik|9130416J18Rik|Arfgap1	ADP-ribosylation factor GTPase activating protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-144719706-2	chr3	144719606	144719806	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001282037, intron 1 of 10)	CpG	629.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-27345610-2	chr14	27345510	27345710	+	677.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289687, intron 1 of 9)	intron (NM_001289687, intron 1 of 9)	9573.0	NM_001289687	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96162275-2	chr3	96162175	96162375	+	872.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_181409, intron 1 of 16)	intron (NM_181409, intron 1 of 16)	305.0	NM_181409	194126.0	Mm.268536	NM_181409	ENSMUSG00000045934	Mtmr11	AI035306|BC051083|Cra	myotubularin related protein 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-101763632-3	chr5	101763524	101763724	+	811.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1506.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115644442-2	chr11	115644342	115644542	+	769.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008163, exon 6 of 6)	3' UTR (NM_008163, exon 6 of 6)	-16147.0	NM_001252395	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133805303-5	chr4	133805218	133805418	+	905.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC4a|LINE|L1	-51707.0	NM_001080819	93760.0	Mm.22478	NM_001080819	ENSMUSG00000007880	Arid1a	1110030E03Rik|BAF250a|Osa1|Smarcf1	AT rich interactive domain 1A (SWI-like)	protein-coding	2.50668473543527	2.11074855057418	2.16793550501436	1.50079458153457	2.52747466480595	1.97390964785933	2.18481488276005	1.50688935085654	-0.0447427562841745	0.962571209027737	0.998431161219273
Merged-chr13-5870974-4	chr13	5870875	5871075	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011803)	TTS (NM_011803)	9486.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-54879102-3	chr11	54878975	54879175	+	833.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	12692.0	NM_008248	15254.0	Mm.425	NM_008248	ENSMUSG00000020267	Hint1	AA673479|Hint|Ipk1|PKCI-1|PRKCNH1	histidine triad nucleotide binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53069350-2	chr4	53069250	53069450	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 27 of 49)	intron (NM_013454, intron 27 of 49)	57470.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-12121413-4	chr18	12121308	12121508	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001289666, exon 1 of 15)	exon (NM_001289666, exon 1 of 15)	129.0	NR_110356	338363.0	Mm.271567	NM_178801	ENSMUSG00000049411	Tmem241	6030446N20Rik	transmembrane protein 241	protein-coding	6.05248216668501	5.8882519783377	5.70193154865386	4.48472020655327	5.97360088332776	4.85528919209612	5.73864391427275	4.75133997255214	-0.238728092876672	0.522746603970526	0.947836760490745
Merged-chr1-180226624-3	chr1	180226546	180226746	+	705.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011183)	TTS (NM_011183)	19304.0	NM_011183	19165.0	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-114668217-2	chr5	114668116	114668316	+	637.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9795.0	NM_022017	63873.0	Mm.266450	NM_022017	ENSMUSG00000014158	Trpv4	0610033B08Rik|OTRPC4|Trp12|VR-OAC|VRL-2|VROAC	transient receptor potential cation channel, subfamily V, member 4	protein-coding	-0.667050715867274	-0.31939191571861	-0.660818683940381	-0.663169007243015	-0.209567617299805	-0.657067299112133	-0.660145144784437	-0.504665336917317	1.00226121763827	0.716968978031876	1
Merged-chr7-34387262-2	chr7	34387162	34387362	+	775.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025948, intron 1 of 10)	intron (NM_025948, intron 1 of 10)	2443.0	NM_001360654	67070.0	Mm.276503	NM_025948	ENSMUSG00000066568	Lsm14a	2700023B17Rik|AA407828|AU017544|Tral|mRAP55A	LSM14A mRNA processing body assembly factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-21472551-4	chr19	21472456	21472656	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010266, exon 1 of 14)	5' UTR (NM_010266, exon 1 of 14)	105.0	NM_010266	14544.0	Mm.45054	NM_010266	ENSMUSG00000058624	Gda	AU015411|AW047581|GAH	guanine deaminase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-51855641-4	chr11	51855550	51855750	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357588, intron 1 of 12)	G-rich|Low_complexity|Low_complexity	1831.0	NM_199299	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-122155460-2	chr14	122155360	122155560	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_080556, exon 16 of 17)	exon (NM_080556, exon 16 of 17)	-26234.0	NM_029556	69634.0	Mm.34608	NM_029556	ENSMUSG00000025545	Clybl	0610033J05Rik|2310014M14Rik|AI256068|Clb	citrate lyase beta like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-47648407-4	chr14	47648309	47648509	+	949.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347524)	promoter-TSS (NM_001347524)	-902.0	NM_001347527	16709.0	Mm.3110	NM_008477	ENSMUSG00000021843	Ktn1	-	kinectin 1	protein-coding	4.30538119470714	4.11135708918707	4.84050330589108	4.13628603869918	5.32536822094846	5.61607280540666	5.66608491823013	5.70107682121918	1.42641147684848	1.10494732820812e-05	0.000505998398619884
Merged-chr9-44605208-7	chr9	44605113	44605313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001357703, exon 1 of 14)	intron (NM_001110826, intron 1 of 13)	321.0	NM_181324	13209.0	Mm.267061	NM_007841	ENSMUSG00000032097	Ddx6	1110001P04Rik|C430015D01Rik|E230023J21Rik|HLR2|mRCK/P54|p54|rck	DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-3015719-3	chr9	3015620	3015820	+	788.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GSAT_MM|Satellite|Satellite	23023.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117081030-2	chr11	117080930	117081130	+	829.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	3682.0	NR_105853	102465258.0		NR_105853	ENSMUSG00000104740	Mir6516	mmu-mir-6516	microRNA 6516	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-44322152-2	chr10	44322052	44322252	+	835.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001314013, intron 5 of 6)	intron (NM_001314013, intron 5 of 6)	-37524.0	NR_035450	100316688.0		NR_035450	ENSMUSG00000089260	Mir1929	mir-1929|mmu-mir-1929	microRNA 1929	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-112464014-4	chr13	112463919	112464119	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010560)	promoter-TSS (NM_010560)	-51.0	NM_010560	16195.0	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26538741-1	chr17	26538641	26538841	+	843.0	f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-22771.0	NM_026170	67458.0	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30650877-1	chr7	30650777	30650977	+	721.0	f1_balb.idr	promoter-TSS (NM_133693)	promoter-TSS (NM_133693)	-649.0	NM_133693	68035.0	Mm.401747	NM_133693	ENSMUSG00000036733	Rbm42	1700003D06Rik|3100004P22Rik	RNA binding motif protein 42	protein-coding	-2.18308165884198	-2.15547475440471	-2.16382331017202	-2.1706810624505	-2.18114370519566	-2.15366558754311	-2.03057248461154	-2.16945352807143	0.759018020146679	0.829933115115583	1
Merged-chr11-8545979-4	chr11	8545878	8546078	+	885.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 7 of 30)	intron (NM_001083587, intron 7 of 30)	118557.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	2.80583220085369	2.43825653052158	3.21441891745008	2.42373310097238	2.91094660057033	2.28040219726436	3.87619199578353	1.43354085141059	0.317246073313101	0.706015933097189	0.998431161219273
Merged-chr6-31613826-2	chr6	31613726	31613926	+	810.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38859.0	NR_153845	105242621.0	Mm.389732	NR_153845		Gm6117	EG619959	predicted gene 6117	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-81426101-2	chr5	81426001	81426201	+	608.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198702, intron 6 of 27)	RMER1B|Other|Other	404508.0	NM_198702	319387.0	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-86498251-2	chr1	86498151	86498351	+	554.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28306.0	NR_153834	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21955925-7	chr9	21955798	21955998	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_025870, exon 1 of 2)	exon (NM_025870, exon 1 of 2)	108.0	NR_132099	100049077.0	Mm.46647	NR_132099		Gm45914	-	predicted gene, 45914	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-8739750-4	chr16	8739667	8739867	+	814.145874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1425.0	NM_001003918	252870.0	Mm.295330	NM_001003918	ENSMUSG00000022710	Usp7	2210010O09Rik|AA409944|AA617399|AU019296|AW548146|C80752|Hausp	ubiquitin specific peptidase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-154410141-2	chr4	154410041	154410241	+	616.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291029, intron 3 of 15)	intron (NM_001291029, intron 3 of 15)	-110246.0	NM_001112744	230972.0	Mm.38481	NM_001112744	ENSMUSG00000029032	Arhgef16	-	Rho guanine nucleotide exchange factor (GEF) 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-97767080-5	chr4	97766969	97767169	+	862.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122952, intron 1 of 10)	intron (NM_001122952, intron 1 of 10)	-10557.0	NM_001122953	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30237620-4	chr2	30237477	30237677	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028299)	promoter-TSS (NR_028299)	54.0	NR_028299	67350.0	Mm.402683	NR_028299		1700084E18Rik	-	RIKEN cDNA 1700084E18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72869506-2	chr6	72869406	72869606	+	592.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019715, intron 1 of 6)	intron (NM_019715, intron 1 of 6)	29786.0	NM_001347231	74287.0	Mm.29194	NM_019715	ENSMUSG00000055239	Kcmf1	1700094M07Rik|Debt91|Pmcf	potassium channel modulatory factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-126251893-4	chr4	126251792	126251992	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145970, intron 1 of 16)	intron (NM_001145970, intron 1 of 16)	4427.0	NM_144941	245877.0	Mm.266716	NM_144941	ENSMUSG00000028849	Map7d1	AV028413|BC019977|Mtap7d1|Parcc1|Rprc1|mKIAA1187	MAP7 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-116485757-4	chr12	116485651	116485851	+	947.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011215)	promoter-TSS (NM_011215)	31.0	NM_011215	19276.0	Mm.206054	NM_011215	ENSMUSG00000056553	Ptprn2	4930425H11Rik|IA2beta|PTP-NP|Phol|mKIAA0387|phogrin	protein tyrosine phosphatase, receptor type, N polypeptide 2	protein-coding	0.0148274364018425	-0.312636972986726	0.0970199193036775	-0.31877628702757	-0.0779871054074585	-0.311849961914885	-0.315348185388341	-0.168494559498561	-1.04872605629605	0.657659595960648	1
Merged-chr6-30026865-4	chr6	30026746	30026946	+	809.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F-int|LTR|ERVL-MaLR	-21142.0	NM_001164228	18181.0	Mm.259258	NM_010938	ENSMUSG00000058440	Nrf1	C87038|D6Ertd415e	nuclear respiratory factor 1	protein-coding	2.23192691589877	2.39540129541324	1.93243790959425	2.25114367423938	1.48706024495433	2.52016220799848	2.21912847501611	1.8908717016749	-0.318272986837385	0.726315139392226	0.998431161219273
Merged-chr9-22123186-1	chr9	22123086	22123286	+	546.0	f1_balb.idr	Intergenic	Intergenic	-5991.0	NM_001357312	66126.0	Mm.29801	NM_170777	ENSMUSG00000013822	Elof1	1110011K10Rik	ELF1 homolog, elongation factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-181591896-2	chr2	181591796	181591996	+	810.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164597, intron 1 of 16)	intron (NM_001164597, intron 1 of 16)	565.0	NM_001164597	269401.0	Mm.386888	NM_001164597	ENSMUSG00000000823	Zfp512b	Gm632|Znf512b	zinc finger protein 512B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-90822517-4	chr8	90822414	90822614	+	856.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-6321.0	NM_177224	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	3.51680991217629	4.36504452719444	2.95434331147338	4.73253502638089	2.58065147307344	4.11014143634802	2.28328707682404	4.03328547541228	-0.805637734403781	0.213302920094788	0.703038353542171
Merged-chr5-79976701-2	chr5	79976601	79976801	+	719.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1VL2|LINE|L1	-1043870.0	NM_001347367	319387.0	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-33092624-4	chr17	33092490	33092690	+	859.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024950, intron 1 of 3)	intron (NM_001024950, intron 1 of 3)	3223.0	NM_001024950	240068.0	Mm.121392	NM_001024950	ENSMUSG00000067424	Zfp563	D10628|D130054H01|NTfin7|Zfp413	zinc finger protein 563	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-80287362-2	chr11	80287262	80287462	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13550.0	NM_139228	246104.0	Mm.194148	NM_139228	ENSMUSG00000017692	Rhbdl3	AI847581|Rhbdl4|Rhomr1|Vrho	rhomboid like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-153625736-2	chr3	153625636	153625836	+	608.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011372, intron 1 of 4)	intron (NM_011372, intron 1 of 4)	99397.0	NM_011372	20447.0	Mm.296453	NM_011372	ENSMUSG00000052544	St6galnac3	Siat7c	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-82876749-2	chr9	82876649	82876849	+	576.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081216, exon 37 of 40)	exon (NM_001081216, exon 37 of 40)	46943.0	NM_001168240	65099.0	Mm.41415	NM_022986	ENSMUSG00000032251	Irak1bp1	4921528N06Rik|AI851240|Aabp3|Aip70|Simpl	interleukin-1 receptor-associated kinase 1 binding protein 1	protein-coding	-0.326269751642406	-0.331964272027293	-0.639803369076479	-0.641674622431694	-0.412892950732716	-0.636795771225539	-0.639265255460222	-0.641348966143008	-1.34502369462435	0.627156786883686	1
Merged-chr11-121735205-4	chr11	121735101	121735301	+	999.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32774.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70302551-4	chr8	70302475	70302675	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021538)	promoter-TSS (NM_021538)	-123.0	NM_001024922	234374.0	Mm.388127	NM_001024922	ENSMUSG00000057788	Ddx49	R27090_2	DEAD (Asp-Glu-Ala-Asp) box polypeptide 49	protein-coding	3.95996088170952	4.10228762966962	3.89723435097171	3.63490798653182	4.14181132572657	3.90045631895395	4.59808364782799	4.6329791493582	0.606290893454109	0.161349207655495	0.622327384549716
Merged-chr6-66890903-1	chr6	66890803	66891003	+	683.0	f0_balb.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-5494.0	NM_001177559	14701.0	Mm.234342	NM_025278	ENSMUSG00000036402	Gng12	2010305F15Rik|AA536815|AI115529|AI314170|AI842738	guanine nucleotide binding protein (G protein), gamma 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-56812904-4	chr14	56812805	56813005	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_152252, exon 1 of 1)	non-coding (NR_152252, exon 1 of 1)	916.0	NR_152252	100503842.0	Mm.297636	NR_152252	ENSMUSG00000100017	2410022M11Rik	-	RIKEN cDNA 2410022M11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-20724181-2	chr14	20724081	20724281	+	713.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001252081)	TTS (NM_001252081)	10381.0	NM_010811	17423.0	Mm.4084	NM_010811	ENSMUSG00000039308	Ndst2	Mndns|NDST-2	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-50685229-4	chr6	50685157	50685357	+	810.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30864.0	NM_021892	60531.0	Mm.157158	NM_021892	ENSMUSG00000029831	Npvf	Rfrp	neuropeptide VF precursor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-71804254-4	chr6	71804141	71804341	+	780.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178608, intron 6 of 6)	intron (NM_178608, intron 6 of 6)	19543.0	NM_025430	66223.0	Mm.28579	NM_025430	ENSMUSG00000052962	Mrpl35	1110066C01Rik	mitochondrial ribosomal protein L35	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-17414439-4	chr14	17414339	17414539	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-246521.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71634503-4	chr8	71634407	71634607	+	988.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029873, intron 39 of 41)	intron (NM_001029873, intron 39 of 41)	-3401.0	NR_106035	102466799.0		NR_106035	ENSMUSG00000098976	Mir6769b	Gm27546|mmu-mir-6769b	microRNA 6769b	ncRNA	2.1642473216654	0.908146890239345	1.71712977671626	0.876157002062932	1.21137903818002	1.52750720659115	1.73249248014147	1.09395780430136	-0.450502758135385	0.728789515147808	0.998431161219273
Merged-chr9-60826899-3	chr9	60826801	60827001	+	866.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357408, intron 1 of 19)	intron (NM_001357408, intron 1 of 19)	32459.0	NM_001357407	72565.0	Mm.68819	NM_028283	ENSMUSG00000034485	Uaca	2700059D02Rik|nucling	uveal autoantigen with coiled-coil domains and ankyrin repeats	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-140700472-4	chr4	140700395	140700595	+	840.224976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173867)	promoter-TSS (NM_173867)	-978.0	NM_173867	108911.0	Mm.253	NM_173867	ENSMUSG00000040945	Rcc2	2610510H01Rik|2610529N02Rik|AA536646|AA675016|Td60|mKIAA1470	regulator of chromosome condensation 2	protein-coding	1.5128284674251	2.28142664919516	2.5709323774714	1.75421234850277	2.45357911718205	2.17709252376885	1.44061471308753	1.16452767431405	-0.425064971445656	0.686926612097545	0.996533206832645
Merged-chr1-7745811-1	chr1	7745711	7745911	+	665.0	f1_c57bl6.idr	Intergenic	RLTR1A2_MM|LTR|ERV1	656891.0	NM_183028	319263.0	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	-1.3681463318974	-1.33624156493372	-1.34650167276047	-0.80669348975676	-1.36769697821496	-1.33401815676661	-1.34417900924365	-1.3534210303531	-2.3580830592467	0.49586638340111	1
Merged-chr11-23821126-4	chr11	23821034	23821234	+	941.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50164.0	NM_009044	19696.0	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-78429417-3	chr10	78429304	78429504	+	935.177795	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3734.0	NM_007793	13014.0	Mm.6095	NM_007793	ENSMUSG00000005054	Cstb	AA960480|Stfb	cystatin B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-32401346-4	chr3	32401250	32401450	+	864.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34801.0	NM_008839	18706.0	Mm.260521	NM_008839	ENSMUSG00000027665	Pik3ca	6330412C24Rik|caPI3K|p110|p110alpha	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-40590634-2	chr19	40590534	40590734	+	993.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-2171.0	NM_153554	56454.0	Mm.233117	NM_019698	ENSMUSG00000025007	Aldh18a1	2810433K04Rik|AI429789|Pycs	aldehyde dehydrogenase 18 family, member A1	protein-coding	-0.849540347160918	-0.83791883826935	-0.842874229298225	-0.845379854937529	-0.567718301155892	-0.197178340663439	-0.842158039317344	-0.844942093372508	3.16182143622335	0.281564155371618	1
Merged-chr6-124809653-4	chr6	124809515	124809715	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009415)	TTS (NM_009415)	697.0	NM_001306053	14794.0	Mm.261906	NM_013539	ENSMUSG00000038451	Spsb2	AI461677|C9|Grcc9|SSB2	splA/ryanodine receptor domain and SOCS box containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-151816313-2	chr1	151816198	151816398	+	641.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001311165, intron 20 of 20)	intron (NM_001311165, intron 20 of 20)	60924.0	NM_001311166	66967.0	Mm.337691	NM_001039644	ENSMUSG00000043019	Edem3	2310050N11Rik	ER degradation enhancer, mannosidase alpha-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-84882790-2	chr2	84882690	84882890	+	884.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_199223, intron 1 of 2)	intron (NM_199223, intron 1 of 2)	3902.0	NM_199223	269295.0	Mm.86447	NM_199223	ENSMUSG00000050896	Rtn4rl2	Ngr2|Ngrh1|Ngrl3	reticulon 4 receptor-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-105943669-3	chr11	105943579	105943779	+	553.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356374, intron 1 of 6)	intron (NM_001356374, intron 1 of 6)	808.0	NM_007805	13056.0	Mm.149403	NM_007805	ENSMUSG00000019590	Cyb561	-	cytochrome b-561	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-84755645-4	chr12	84755707	84755907	+	783.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_023409, exon 4 of 4)	3' UTR (NM_023409, exon 4 of 4)	17305.0	NM_023409	67963.0	Mm.282556	NM_023409	ENSMUSG00000021242	Npc2	2700012J19Rik|AA408070|AU045843|HE1	NPC intracellular cholesterol transporter 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-148133962-2	chr4	148133862	148134062	+	745.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001305420, intron 1 of 9)	B3|SINE|B2	3042.0	NM_001305420	71890.0	Mm.9648	NM_027985	ENSMUSG00000029003	Mad2l2	2310033C13Rik|G1-453-4|MAD2B|REV7|repro22	MAD2 mitotic arrest deficient-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-64092645-1	chr16	64092545	64092745	+	592.0	f1_balb.idr	Intergenic	Intergenic	-228488.0	NM_010140	13837.0	Mm.1977	NM_010140	ENSMUSG00000052504	Epha3	AW492086|Cek4|EK4|ETK1|End3|Hek|Hek4|Mek4|Tyro4	Eph receptor A3	protein-coding	-1.17943794200251	-1.15405343839401	-1.16524426910141	-1.17443675064204	-1.17894146482318	-0.651298897862041	-0.986628054269472	-1.17279130084131	2.69714081620639	0.401382668157781	1
Merged-chr1-39313908-4	chr1	39313807	39314007	+	637.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008719, intron 7 of 20)	intron (NM_008719, intron 7 of 20)	-53944.0	NM_053257	114641.0	Mm.379302	NM_053257	ENSMUSG00000073702	Rpl31	Dts	ribosomal protein L31	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-12824753-4	chr15	12824648	12824848	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029998)	promoter-TSS (NM_029998)	-67.0	NM_026799	14000.0	Mm.293142	NM_026799	ENSMUSG00000022191	Drosha	1110013A17Rik|AI874853|Etohi2|Rn3|Rnasen	drosha, ribonuclease type III	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-16364201-2	chr14	16364101	16364301	+	919.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1005.0	NM_009409	21974.0	Mm.130362	NM_009409	ENSMUSG00000017485	Top2b	D230016L12Rik|Top-2	topoisomerase (DNA) II beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-65976455-2	chr3	65976324	65976524	+	900.8333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	-18175.0	NM_001355432	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	1.03040787812252	1.49088866035616	1.83699410006209	1.78423455316353	1.70673632485881	1.50073835246478	1.60587260758707	1.79356614246427	0.261649878177381	0.81757355632119	0.998431161219273
Merged-chr17-26606594-2	chr17	26606446	26606646	+	732.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026170, intron 1 of 9)	intron (NM_026170, intron 1 of 9)	45034.0	NM_026170	67458.0	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-130564244-2	chr2	130564171	130564371	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040348)	promoter-TSS (NR_040348)	514.0	NM_207207	99045.0	Mm.30057	NM_207207	ENSMUSG00000037740	Mrps26	AI648866|GI008|MRP-S13|MRP-S26|Rpms13	mitochondrial ribosomal protein S26	protein-coding	1.79656082912769	2.2960274850341	1.56844237606264	2.83669255374112	1.94465568202276	2.31305787689492	2.45905762754612	1.89760386642098	-0.141628837555038	0.877355196484591	0.998431161219273
Merged-chr8-84815742-4	chr8	84815665	84815865	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033145, exon 2 of 2)	non-coding (NR_033145, exon 2 of 2)	7058.0	NM_201227	23863.0	Mm.304252	NM_201227	ENSMUSG00000053226	Dand5	Cerl-2|Cerl2|Cerr2|Dte|GREM3|coco	DAN domain family member 5, BMP antagonist	protein-coding	2.48271952884278	1.76230818429936	2.36659058744061	2.30232310196795	2.66263327124766	2.586455380802	2.79608482536043	2.18626526949549	0.704457438980903	0.381571066670203	0.872879327710422
Merged-chr15-69079923-1	chr15	69079823	69080023	+	653.0	f1_c57bl6.idr	intron (NM_010158, intron 7 of 8)	intron (NM_010158, intron 7 of 8)	151503.0	NM_010158	13992.0	Mm.17964	NM_010158	ENSMUSG00000022332	Khdrbs3	Etle|SLM-2|Salp|Slm2|T-STAR	KH domain containing, RNA binding, signal transduction associated 3	protein-coding	1.09354354857045	2.0737409789637	2.43632772865004	1.16487253970573	1.26152750355443	0.764127013101751	0.742519435528331	0.723387892061264	-3.33196079078799	0.0194223506142109	0.176004050354458
Merged-chr2-35416679-3	chr2	35416583	35416783	+	600.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010283, intron 4 of 8)	intron (NM_010283, intron 4 of 8)	-19509.0	NM_001272040	74854.0	Mm.159338	NM_001080709	ENSMUSG00000079421	4930402F06Rik	-	RIKEN cDNA 4930402F06 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-64349423-2	chr7	64349323	64349523	+	563.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_177893, exon 12 of 14)	exon (NM_177893, exon 12 of 14)	24672.0	NM_177893	330554.0	Mm.236510	NM_177893	ENSMUSG00000033458	Fan1	6030441H18Rik|Mtmr15|mFAN1	FANCD2/FANCI-associated nuclease 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-43953197-4	chr16	43953089	43953289	+	900.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027801, intron 12 of 15)	MTD|LTR|ERVL-MaLR	25861.0	NM_001007460	332175.0	Mm.327852	NM_001007460	ENSMUSG00000036304	Zdhhc23	Gm1751|Gm779|nidd	zinc finger, DHHC domain containing 23	protein-coding	-1.5356785800515	-1.50457819905931	-1.51398321097173	-1.52170876778291	-1.25174950685677	-1.50254009374394	-1.51185412242675	-1.37234212311997	1.86472964096384	0.593287162270504	1
Merged-chr11-34149553-2	chr11	34149467	34149667	+	723.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51013.0	NR_155520	76874.0	Mm.437529	NR_155520		4930469K13Rik	-	RIKEN cDNA 4930469K13 gene	ncRNA	-0.101876252662102	-0.0848171385334971	0.0940768981445081	0.64595004876442	-0.100806695007844	-0.0835633470017398	-0.0891586276033528	0.564233055378467	-0.473998136870816	0.836663477122829	1
Merged-chr2-102944863-2	chr2	102944763	102944963	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43198.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34714520-2	chr17	34714420	34714620	+	848.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_031176, intron 19 of 32)	intron (NM_031176, intron 19 of 32)	29377.0	NM_009780	12268.0	Mm.477109	NM_009780	ENSMUSG00000073418	C4b	C4|Ss	complement component 4B (Chido blood group)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-64550863-2	chr2	64550763	64550963	+	570.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-452825.0	NM_001267847	60344.0	Mm.130769	NM_021716	ENSMUSG00000075324	Fign	fi|fidget	fidgetin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-4554471-2	chr2	4554371	4554571	+	566.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 11 of 23)	B2_Mm1a|SINE|B2	-5283.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-110718095-2	chr8	110717995	110718195	+	856.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_151675, intron 17 of 17)	MTD|LTR|ERVL-MaLR	-3381.0	NM_198625	244654.0	Mm.490385	NM_198625	ENSMUSG00000033763	Mtss1l	ABBA	metastasis suppressor 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-112994462-3	chr5	112994362	112994562	+	805.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285806, intron 1 of 20)	intron (NM_001285806, intron 1 of 20)	21076.0	NM_001285806	320129.0	Mm.285619	NM_177078	ENSMUSG00000042249	Grk3	4833444A01Rik|AI851927|AW551196|Adrbk-2|Adrbk2|Bark-2	G protein-coupled receptor kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-121840565-2	chr5	121840465	121840665	+	766.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3706.0	NM_008507	16923.0	Mm.65493	NM_008507	ENSMUSG00000042594	Sh2b3	AI429800|Lnk	SH2B adaptor protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-63943933-2	chr7	63943826	63944026	+	666.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-5011.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	-1.27480050717774	-0.604729833679879	-1.25573295904267	-1.26493563944758	-1.27428069156472	-1.24210192204986	-1.25319678955844	-1.26328836405502	-2.6632876257018	0.439827081912762	1
Merged-chr2-166631422-2	chr2	166631322	166631522	+	748.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 5 of 39)	intron (NM_177782, intron 5 of 39)	66900.0	NR_152154	433503.0	Mm.491336	NR_152154		Gm29679	-	predicted gene, 29679	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35303974-2	chr17	35303953	35304153	+	622.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16494.0	NM_010390	15006.0	Mm.466882	NM_010390	ENSMUSG00000079507	H2-Q1	H-2Q1|Q1|Q1b|Q1d|Q1k|Qa-1|Qa1|Qed-1	histocompatibility 2, Q region locus 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124481477-2	chr5	124481377	124481577	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-1678.0	NM_029532	76167.0	Mm.156035	NM_029532	ENSMUSG00000029402	Snrnp35	6330548G22Rik	small nuclear ribonucleoprotein 35 (U11/U12)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-31145710-4	chr9	31145625	31145825	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-13926.0	NM_011176	19143.0	Mm.243926	NM_011176	ENSMUSG00000031995	St14	Epithin|MT-SP1|Prss14|Tmprss14|mCAP3|matriptase	suppression of tumorigenicity 14 (colon carcinoma)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171117121-2	chr1	171117021	171117221	+	765.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-4540.0	NM_001081275	75472.0	Mm.32760	NM_029301	ENSMUSG00000026649	Cfap126	1700009P17Rik|AV282292|Flattop|Fltp	cilia and flagella associated protein 126	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45103832-4	chr7	45103735	45103935	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010189)	promoter-TSS (NM_010189)	-13.0	NM_010189	14132.0	Mm.3303	NM_010189	ENSMUSG00000003420	Fcgrt	FcRn	Fc receptor, IgG, alpha chain transporter	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134090516-4	chr6	134090424	134090624	+	972.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 2 of 8)	intron (NM_001303102, intron 2 of 8)	54824.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	-0.720902176971252	-0.220173605072276	-0.714222939757302	-0.716737222576515	-0.242569995435372	-0.710221449342645	-0.713503450861049	-0.716298271953805	-0.0656984997788213	0.982292722008122	1
Merged-chr19-57358549-4	chr19	57358463	57358663	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040316, intron 1 of 2)	ORR1E|LTR|ERVL-MaLR	2336.0	NR_040316	320879.0	Mm.375089	NR_040316	ENSMUSG00000097785	B230217O12Rik	-	RIKEN cDNA B230217O12 gene	ncRNA	0.175467352801477	-0.111026617332502	-0.117781980364098	-0.123041227396173	0.182910193958285	-0.109513130428152	1.00090902616263	-0.122119403556821	2.63132984790836	0.24126117863577	1
Merged-chr6-51592794-2	chr6	51592694	51592894	+	566.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	47501.0	NM_001361577	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	0.266465112765984	-0.259855133044996	-0.264002244498973	-0.267193000050831	0.277552048944258	-0.0690325080086533	-0.263088684681715	-0.266636137490686	0.397251067617446	0.872047266858809	1
Merged-chr11-98900744-2	chr11	98900644	98900844	+	675.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_197940, exon 8 of 8)	3' UTR (NM_197940, exon 8 of 8)	-7145.0	NM_001025779	23834.0	Mm.20912	NM_011799	ENSMUSG00000017499	Cdc6	CDC18L	cell division cycle 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3791069-2	chr4	3790969	3791169	+	550.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010747, exon 13 of 13)	3' UTR (NM_010747, exon 13 of 13)	44586.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-47507455-3	chr14	47507320	47507520	+	785.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_027414, exon 3 of 6)	non-coding (NR_027414, exon 3 of 6)	34859.0	NM_001146085	78938.0	Mm.11935	NM_030236	ENSMUSG00000037536	Fbxo34	2900057B08Rik|5830426G16Rik	F-box protein 34	protein-coding	1.5056099429664	1.33852349698123	1.58702431871802	1.11192214003809	0.599462577825888	0.637295645216687	0.625167391889251	0.614681472094007	-4.84031060881912	0.0025046819274213	0.0398204599362201
Merged-chr10-125224762-3	chr10	125224671	125224871	+	612.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001358915, exon 6 of 6)	3' UTR (NM_001358915, exon 6 of 6)	84045.0	NM_001358915	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-106683855-3	chr12	106683761	106683961	+	983.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32463.0	NR_015512	71033.0	Mm.159404	NR_015512	ENSMUSG00000085820	4933406K04Rik	4930426M03Rik|4930485I22Rik|4933427G14Rik	RIKEN cDNA 4933406K04 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-143526103-2	chr5	143526003	143526203	+	794.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347530, intron 1 of 6)	Lx8b|LINE|L1	1890.0	NM_009007	19353.0	Mm.292510	NM_009007	ENSMUSG00000001847	Rac1	AL023026|D5Ertd559e	Rac family small GTPase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-25429177-2	chr2	25429077	25429277	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007379, intron 1 of 47)	intron (NM_007379, intron 1 of 47)	503.0	NM_007379	11305.0	Mm.2210	NM_007379	ENSMUSG00000026944	Abca2	AI413825|Abc2|D2H0S1474E|mKIAA1062	ATP-binding cassette, sub-family A (ABC1), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-116719600-4	chr4	116719512	116719712	+	796.979187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1343.0	NM_146151	230661.0	Mm.482431	NM_146151	ENSMUSG00000033985	Tesk2	-	testis-specific kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4371236-4	chr16	4371153	4371353	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009624, intron 2 of 10)	intron (NM_009624, intron 2 of 10)	49245.0	NM_001291910	11515.0	Mm.439750	NM_009624	ENSMUSG00000005580	Adcy9	AC9|ACtp10|AW125421|D16Wsu65e|mKIAA0520	adenylate cyclase 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-54442728-4	chr14	54442604	54442804	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008608)	TTS (NM_008608)	11106.0	NM_008608	17387.0	Mm.280175	NM_008608	ENSMUSG00000000957	Mmp14	AI325305|MMP-X1|MT-MMP-1|MT1-MMP|sabe	matrix metallopeptidase 14 (membrane-inserted)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97645020-4	chr11	97644914	97645114	+	714.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-15298.0	NM_175332	103551.0	Mm.24506	NM_175332	ENSMUSG00000043439	Epop	AA409164|AI413509|AW539173|E13|E130012A19Rik|esPRC2p48	elongin BC and polycomb repressive complex 2 associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-7083310-2	chr15	7083210	7083410	+	917.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA4|LINE|L1	-46262.0	NM_001113386	16880.0	Mm.149720	NM_013584	ENSMUSG00000054263	Lifr	A230075M04Rik|AW061234|LIF	leukemia inhibitory factor receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-3357758-2	chr5	3357658	3357858	+	554.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 2 of 7)	B2_Mm2|SINE|B2	13865.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105701611-4	chr8	105701504	105701704	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001348349)	promoter-TSS (NM_001348349)	-43.0	NM_001047435	56513.0	Mm.472753	NM_019695	ENSMUSG00000005699	Pard6a	0710008C04Rik|2610010A15Rik|PAR-6A|PAR6alpha|Par-6|Par6|Par6c|TAX40|Tip-40	par-6 family cell polarity regulator alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-98799028-6	chr10	98798902	98799102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-115640.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152746675-2	chr1	152746575	152746775	+	982.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346117, intron 1 of 18)	intron (NM_001346117, intron 1 of 18)	-3876.0	NM_001081197	71281.0	Mm.158650	NM_001081197	ENSMUSG00000055547	Apobec4	4933431M11Rik	apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 4 (putative)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-78438299-2	chr10	78438199	78438399	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172134, exon 11 of 11)	3' UTR (NM_172134, exon 11 of 11)	3500.0	NR_105837	102465221.0		NR_105837	ENSMUSG00000098932	Mir6410	Gm27916|mmu-mir-6410	microRNA 6410	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120768764-4	chr8	120768679	120768879	+	976.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30140.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-124122257-4	chr9	124122125	124122325	+	993.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009917, intron 1 of 1)	intron (NM_009917, intron 1 of 1)	682.0	NM_009917	12774.0	Mm.14302	NM_009917	ENSMUSG00000079227	Ccr5	AM4-7|CD195|Cmkbr5	chemokine (C-C motif) receptor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-186708922-4	chr1	186708825	186709025	+	889.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2936.0	NM_001329107	21808.0	Mm.18213	NM_009367	ENSMUSG00000039239	Tgfb2	BB105277|Tgf-beta2|Tgfb-2	transforming growth factor, beta 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-63147272-1	chr14	63147172	63147372	+	642.0	f0_balb.idr	intron (NM_001360211, intron 7 of 7)	intron (NM_001360211, intron 7 of 7)	24810.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-53244916-2	chr18	53244816	53245016	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029394)	promoter-TSS (NM_029394)	-746.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-89022519-4	chr11	89022410	89022610	+	836.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	23107.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	2.41885681148683	1.25528860842253	1.68251245162081	2.18992654515627	1.38664265641297	2.66103417253272	1.87086089659002	2.56769789740895	0.606441652529398	0.55276592572183	0.959564390599126
Merged-chr4-3678110-4	chr4	3678008	3678208	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010747)	promoter-TSS (NM_010747)	-13.0	NM_001111096	17096.0	Mm.317331	NM_010747	ENSMUSG00000042228	Lyn	AA407514|Hck-2|p53Lyn|p56Lyn	LYN proto-oncogene, Src family tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-78624220-4	chr8	78624123	78624323	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001009981, intron 5 of 10)	intron (NM_001009981, intron 5 of 10)	114895.0	NM_001282108	76775.0	Mm.334631	NM_029736	ENSMUSG00000031684	Slc10a7	2410193C02Rik|P7	solute carrier family 10 (sodium/bile acid cotransporter family), member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3871079-4	chr12	3870959	3871159	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007872, intron 4 of 22)	intron (NM_007872, intron 4 of 22)	-8815.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-51790482-2	chr12	51790382	51790582	+	852.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_144788, exon 14 of 43)	exon (NM_144788, exon 14 of 43)	39054.0	NM_144788	207304.0	Mm.249391	NM_144788	ENSMUSG00000035247	Hectd1	A630086P08Rik|AI844876|b2b327Clo|opm	HECT domain E3 ubiquitin protein ligase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-127043662-4	chr4	127043567	127043767	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17487.0	NM_026670	68310.0	Mm.273806	NM_026670	ENSMUSG00000043872	Zmym1	5830412B09Rik|AW209050	zinc finger, MYM domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-57196760-2	chr17	57196660	57196860	+	609.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC-int|LTR|ERVL-MaLR	-2579.0	NM_019418	50930.0	Mm.483369	NM_019418	ENSMUSG00000005824	Tnfsf14	HVEM-L|HVEML|LIGHT|LTg|Ly113|Tnlg1d	tumor necrosis factor (ligand) superfamily, member 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-39318921-1	chr8	39318821	39319021	+	914.0	f0_balb.idr	intron (NR_044988, intron 2 of 3)	Lx6|LINE|L1	20941.0	NR_044988	621335.0	Mm.208080	NR_044988	ENSMUSG00000109827	Gm6213	EG621335	predicted gene 6213	ncRNA	-0.0270840353484225	-0.458907095067355	-0.462314567619845	-0.464931087613385	-0.0175749669277987	-0.272894239023951	-0.461564586479014	-0.464474771568111	0.471801085307501	0.857090258716189	1
Merged-chr2-80026851-1	chr2	80026751	80026951	+	666.0	f1_balb.idr	intron (NM_001355141, intron 2 of 15)	intron (NM_001355141, intron 2 of 15)	12051.0	NM_001355142	18573.0	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-38712028-2	chr6	38711928	38712128	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010433, intron 12 of 14)	intron (NM_010433, intron 12 of 14)	48959.0	NM_001101507	665180.0	Mm.349066	NM_001101507	ENSMUSG00000079598	Clec2l	AI414054|AW122724|Gm1064	C-type lectin domain family 2, member L	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-54846512-1	chr1	54846412	54846612	+	544.0	f0_balb.idr	intron (NM_001081433, intron 1 of 27)	intron (NM_001081433, intron 1 of 27)	79875.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	0.303305078609446	1.0469616823088	0.32476228634583	0.316784569274333	1.15797585485821	1.29072975219874	0.327024250778725	0.318185707585252	1.50913628545116	0.43478965301965	1
Merged-chr18-5133239-3	chr18	5133140	5133340	+	750.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32491.0	NR_153824	102637682.0	Mm.451914	NR_153824		Gm26682	Gm38715	predicted gene, 26682	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-51520197-4	chr10	51520089	51520289	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	29291.0	NM_013532	14728.0	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-34974029-2	chr5	34973929	34974129	+	754.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_173402, intron 2 of 16)	L1MB3|LINE|L1	24581.0	NM_173402	71729.0	Mm.196208	NM_173402	ENSMUSG00000029101	Rgs12	1200016K18Rik|4632412M04Rik|AI481290|E130309H11	regulator of G-protein signaling 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-100335598-3	chr6	100335476	100335676	+	584.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48218.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127069558-2	chr10	127069458	127069658	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040660)	promoter-TSS (NR_040660)	703.0	NM_025982	67125.0	Mm.35650	NM_025982	ENSMUSG00000006736	Tspan31	2700085A14Rik|AW742554|Sas	tetraspanin 31	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-13595003-4	chr8	13594913	13595113	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 7 of 23)	intron (NM_009025, intron 7 of 23)	-32552.0	NM_001080781	66501.0	Mm.46136	NM_025601	ENSMUSG00000031452	1700029H14Rik	-	RIKEN cDNA 1700029H14 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118453347-2	chr11	118453247	118453447	+	859.166626	f1_balb.idr|f1_c57bl6.idr	intron (NR_045902, intron 1 of 2)	RMER13B|LTR|ERVK	1648.0	NR_045902	100126224.0	Mm.441989	NR_045902	ENSMUSG00000086514	Gm11747	-	predicted gene 11747	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71560022-1	chr8	71559922	71560122	+	584.0	f1_c57bl6.idr	TTS (NM_145598)	TTS (NM_145598)	-1151.0	NM_001100462	434325.0	Mm.33613	NM_001100462	ENSMUSG00000043664	Tmem221	-	transmembrane protein 221	protein-coding	-1.84338809552259	-1.81318737035477	-1.82232031892021	-1.82982239479772	-1.84126806045696	-1.81120822230163	-1.67654984435352	-1.68477655160247	1.53670164110226	0.662623097221823	1
Merged-chr4-101685348-4	chr4	101685259	101685459	+	976.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32048.0	NM_001122899	16847.0	Mm.259282	NM_010704	ENSMUSG00000057722	Lepr	LEPROT|Leprb|Modb1|OB-RGRP|Obr|db|diabetes|obese-like|obl	leptin receptor	protein-coding	5.42019389277148	4.97621985941534	4.94630082728267	5.35452984939093	4.46712872317589	5.05152118154026	5.05658222076455	3.59620983931332	-0.655571400807841	0.0831618766562065	0.441624164703968
Merged-chr11-69838445-4	chr11	69838344	69838544	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026982)	promoter-TSS (NM_026982)	-81.0	NM_026982	69186.0	Mm.248772	NM_026982	ENSMUSG00000070394	Tmem256	1810027O10Rik|3110009M16Rik	transmembrane protein 256	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70970694-7	chr11	70970601	70970801	+	993.723816	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_075087)	promoter-TSS (NR_075087)	501.0	NM_001252415	69723.0	Mm.275691	NM_027186	ENSMUSG00000018449	Rpain	2400006N03Rik|Rip	RPA interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-78482546-4	chr9	78482456	78482656	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010106)	promoter-TSS (NM_010106)	-832.0	NM_010106	13627.0	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-29363305-4	chr17	29363202	29363402	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013710, intron 1 of 15)	intron (NM_013710, intron 1 of 15)	2388.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	0.487464932291225	0.523091783077536	0.0466828077654954	0.0427942425835379	0.176361413806017	0.0528787048687467	0.0477961913458933	0.559060795722596	-0.502102293202151	0.811065441004081	1
Merged-chr6-89312680-3	chr6	89312564	89312764	+	828.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26939.0	NR_131021	75131.0	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	Gm44205	RIKEN cDNA 4930512J16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-85505959-3	chr11	85505853	85506053	+	856.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138681, intron 15 of 25)	intron (NM_138681, intron 15 of 25)	152789.0	NM_001166643	192197.0	Mm.209989	NM_138681	ENSMUSG00000059439	Bcas3	1500019F07Rik|2610028P08Rik|AU021018|BC028339|K20D4|rudhira	breast carcinoma amplified sequence 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-49850537-4	chr18	49850425	49850625	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081371, intron 5 of 42)	intron (NM_001081371, intron 5 of 42)	17528.0	NM_001081371	240283.0	Mm.257790	NM_001081371	ENSMUSG00000037416	Dmxl1	C630007L23Rik|D030030C22	Dmx-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-72491944-4	chr9	72491831	72492031	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009359)	promoter-TSS (NM_009359)	28.0	NM_009359	21778.0	Mm.14485	NM_009359	ENSMUSG00000090626	Tex9	Gm19407|tsec-1	testis expressed gene 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-108848688-3	chr8	108848574	108848774	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007496, intron 3 of 9)	intron (NM_007496, intron 3 of 9)	-88186.0	NR_037295	100526511.0		NR_037295	ENSMUSG00000093241	Mir3108	mir-3108|mmu-mir-3108	microRNA 3108	ncRNA	4.22072437750318	4.48763540017156	4.34805035959635	4.31559426525365	1.6275638439257	1.5902300348977	1.51510900951183	3.0869562457463	-3.52207095085397	3.43715337378826e-07	2.61006115055136e-05
Merged-chr13-28607870-3	chr13	28607782	28607982	+	773.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045054, intron 6 of 7)	intron (NR_045054, intron 6 of 7)	102991.0	NR_105787	102466635.0		NR_105787	ENSMUSG00000099158	Mir6368	Gm27800|mmu-mir-6368	microRNA 6368	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-63714855-3	chr9	63714731	63714931	+	929.1333619999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016769, intron 1 of 8)	L1MB7|LINE|L1	43163.0	NM_016769	17127.0	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129810421-4	chr4	129810334	129810534	+	993.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10045.0	NM_008974	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-5288483-4	chr10	5288380	5288580	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347711, intron 55 of 145)	intron (NM_001347711, intron 55 of 145)	-93773.0	NM_001079686	64009.0	Mm.331626	NM_022027	ENSMUSG00000096054	Syne1	8B|A330049M09Rik|BE692247|C130039F11Rik|CPG2|KASH1|Myne1|mKIAA1756|myne-1	spectrin repeat containing, nuclear envelope 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-84661880-3	chr6	84661715	84661915	+	854.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177077, intron 20 of 21)	intron (NM_177077, intron 20 of 21)	-67907.0	NM_001177713	232174.0	Mm.255246	NM_175475	ENSMUSG00000063415	Cyp26b1	CP26|P450RAI-2	cytochrome P450, family 26, subfamily b, polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-135536558-4	chr1	135536460	135536660	+	988.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173437, intron 2 of 28)	intron (NM_173437, intron 2 of 28)	48795.0	NM_173437	215690.0	Mm.34977	NM_173437	ENSMUSG00000009418	Nav1	9530089B19|9930003A20Rik|C230080M11Rik|Gm38399|Pomfil3|Unc53h1|mKIAA1151|steerin-1	neuron navigator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-56995031-4	chr9	56994943	56995143	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019651)	promoter-TSS (NM_019651)	75.0	NM_019651	56294.0	Mm.325643	NM_019651	ENSMUSG00000032290	Ptpn9	MEG2	protein tyrosine phosphatase, non-receptor type 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-98836791-2	chr13	98836691	98836891	+	799.625	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-21342.0	NM_172591	218503.0	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-88309937-4	chr4	88309840	88310040	+	950.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081184, intron 21 of 43)	intron (NM_001081184, intron 21 of 43)	128986.0	NM_025760	66775.0	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	0.478685762402527	0.608598073930088	0.130167142521462	0.126010510328954	0.487044361557658	0.617908376956725	0.131356999535196	0.126736040600567	0.040408840051822	0.98416007356102	1
Merged-chr12-79296351-4	chr12	79296273	79296473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252562)	promoter-TSS (NM_001252562)	-91.0	NM_001008550	211978.0	Mm.297919	NM_001008550	ENSMUSG00000066440	Zfyve26	4930465A13|9330197E15Rik|A630028O16Rik|Gm893|mKIAA0321	zinc finger, FYVE domain containing 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-46734960-4	chr14	46734871	46735071	+	786.424988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25570.0	NM_001360041	72391.0	Mm.272394	NM_028222	ENSMUSG00000037628	Cdkn3	2410006H10Rik|KAP	cyclin-dependent kinase inhibitor 3	protein-coding	2.42948472977788	2.34382024941817	2.26498102390288	2.98285880995335	2.54396186422748	1.50269425567895	3.16073116791282	2.46617475585511	0.0301324408156267	0.971517155760481	0.998431161219273
Merged-chr3-95316445-2	chr3	95316345	95316545	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029789, intron 1 of 10)	intron (NM_029789, intron 1 of 10)	1255.0	NM_029789	76893.0	Mm.181009	NM_029789	ENSMUSG00000015714	Cers2	0610013I17Rik|AI225939|Lass2|TRH3	ceramide synthase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4286324-2	chr19	4286224	4286424	+	910.6666869999999	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_130863, exon 22 of 22)	3' UTR (NM_130863, exon 22 of 22)	-3187.0	NM_026720	68423.0	Mm.23642	NM_026720	ENSMUSG00000005986	Ankrd13d	0710001P18Rik|AI430801	ankyrin repeat domain 13 family, member D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101375124-4	chr15	101375027	101375227	+	997.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5002.0	NM_028770	74127.0	Mm.440055	NM_028770	ENSMUSG00000037185	Krt80	1200016G03Rik|2310041I20Rik|Kb20	keratin 80	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-119344437-4	chr8	119344360	119344560	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024219)	promoter-TSS (NM_024219)	-78.0	NM_024219	68196.0	Mm.358714	NM_024219	ENSMUSG00000031839	Hsbp1	0610007A03Rik|AA408769|Hsp25	heat shock factor binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-95893335-2	chr16	95893235	95893435	+	635.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_040484, intron 1 of 3)	intron (NR_040484, intron 1 of 3)	5378.0	NR_040485	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-45596272-1	chr17	45596172	45596372	+	1000.0	f1_balb.idr	promoter-TSS (NM_001199116)	promoter-TSS (NM_001199116)	-370.0	NM_001199114	63959.0	Mm.29744	NM_022880	ENSMUSG00000023942	Slc29a1	1200014D21Rik|AA407560|ENT1	solute carrier family 29 (nucleoside transporters), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-67582753-4	chr3	67582644	67582844	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025813)	promoter-TSS (NM_025813)	-24.0	NM_025813	66868.0	Mm.491153	NM_025813	ENSMUSG00000027775	Mfsd1	1200003O06Rik	major facilitator superfamily domain containing 1	protein-coding	5.70114491262009	5.68105495895089	5.37580259487307	5.27488181395022	5.16098059304364	5.33558175398487	5.24952733314629	5.68447333867184	-0.170979188356885	0.541722599359209	0.954866069207078
Merged-chr10-13304868-4	chr10	13304755	13304955	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195065, intron 1 of 12)	intron (NM_001195065, intron 1 of 12)	19434.0	NM_001195096	215789.0	Mm.283359	NM_001033257	ENSMUSG00000062866	Phactr2	AV158170|BC012871	phosphatase and actin regulator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-27669517-2	chr15	27669417	27669617	+	791.400024	f1_balb.idr|f1_c57bl6.idr	intron (NM_198301, intron 1 of 6)	intron (NM_198301, intron 1 of 6)	12025.0	NM_001242424	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-70832760-4	chr17	70832680	70832880	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13997.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64600098-4	chr5	64599978	64600178	+	916.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045078, intron 3 of 3)	intron (NR_045078, intron 3 of 3)	10621.0	NR_045078	100042198.0	Mm.25191	NR_045078	ENSMUSG00000105402	Gm3716	Gm1683	predicted gene 3716	ncRNA	-0.856125782247858	-0.0737690893323055	-0.848721316185479	-0.851498492279678	-0.855436102039452	-0.839932679199729	-0.651182992644034	-0.851012773322252	-2.26086685837942	0.442701397175789	1
Merged-chr10-25443788-3	chr10	25443691	25443891	+	973.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013511, exon 3 of 20)	exon (NM_013511, exon 3 of 20)	35423.0	NM_013511	13822.0	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-33670969-1	chr8	33670869	33671069	+	646.0	f1_c57bl6.idr	intron (NM_010344, intron 3 of 12)	intron (NM_010344, intron 3 of 12)	17731.0	NM_010344	14782.0	Mm.283573	NM_010344	ENSMUSG00000031584	Gsr	AI325518|D8Ertd238e|Gr-1|Gr1	glutathione reductase	protein-coding	-1.14149542847138	-0.33100028091332	-1.12720875772362	-1.13728867753953	-1.14086750656251	-1.11193125150289	-1.12436624874263	-1.1356767669541	-2.98824766641611	0.369648585513947	1
Merged-chr4-102581661-1	chr4	102581561	102581761	+	919.0	f1_balb.idr	intron (NM_019840, intron 6 of 14)	intron (NM_019840, intron 6 of 14)	-5897.0	NM_001177982	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	0.188059898338782	-0.261584044240898	-0.269088189315265	-0.274969020872452	-0.283421800343511	1.01495753675282	-0.267421822923211	-0.273935765122752	2.12973287128711	0.37540250517234	1
Merged-chr4-74362952-4	chr4	74362852	74363052	+	909.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356561, intron 16 of 20)	L1MDa|LINE|L1	111073.0	NM_001356561	76804.0	Mm.209059	NM_144787	ENSMUSG00000028397	Kdm4c	2410141F18Rik|AA517467|Gasc1|Jmjd2c	lysine (K)-specific demethylase 4C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-152688799-1	chr2	152688699	152688899	+	745.0	f1_balb.idr	TTS (NM_025543)	TTS (NM_025543)	1651.0	NM_025543	66405.0	Mm.440291	NM_025543	ENSMUSG00000042814	Mcts2	2400002F11Rik|MCT-2	malignant T cell amplified sequence 2	protein-coding	-2.05752322593321	-2.15521190974092	-2.16307242109104	-2.16952927915413	-2.17938029103484	-2.15350850414045	-2.16129297361887	-2.16837350464794	-0.683654500252594	0.846597994014493	1
Merged-chr7-30287246-3	chr7	30287143	30287343	+	815.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_144498, intron 2 of 2)	intron (NR_144498, intron 2 of 2)	-4452.0	NM_001360763	76686.0	Mm.159258	NM_001081114	ENSMUSG00000013921	Clip3	1500005P14Rik|AI844915|Clipr-59	CAP-GLY domain containing linker protein 3	protein-coding	1.93615013612098	0.971285401226892	1.75079721775337	1.3126287664348	1.26044330957044	0.974991650799008	1.51291879369474	1.98511851407938	-0.186769630689325	0.881852808909076	0.998431161219273
Merged-chr17-32951635-3	chr17	32951523	32951723	+	859.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033585, exon 3 of 3)	non-coding (NR_033585, exon 3 of 3)	-4262.0	NM_130882	170716.0	Mm.254838	NM_130882	ENSMUSG00000024055	Cyp4f13	0610030I10Rik|Cypf13	cytochrome P450, family 4, subfamily f, polypeptide 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-100837330-3	chr13	100837237	100837437	+	965.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3910.0	NM_022885	69048.0	Mm.402215	NM_022885	ENSMUSG00000021629	Slc30a5	1810010K08Rik|AF233321|ZNT5|ZTL1|ZnT-5|Zntl1	solute carrier family 30 (zinc transporter), member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-4395580-2	chr10	4395480	4395680	+	872.3333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-7472.0	NM_001033466	381990.0	Mm.262466	NM_001033466	ENSMUSG00000075327	Zbtb2	Gm1103	zinc finger and BTB domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-33349147-2	chr2	33349047	33349247	+	698.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290570, intron 1 of 16)	intron (NM_001290570, intron 1 of 16)	22347.0	NM_001290570	241308.0	Mm.274249	NM_175211	ENSMUSG00000038831	Ralgps1	5830418G11Rik|AI853783|AI854138|RALGEF2|RALGPS1A|RalGEF 2|mKIAA0351	Ral GEF with PH domain and SH3 binding motif 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-102867944-4	chr2	102867856	102868056	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039150, intron 1 of 13)	intron (NM_001039150, intron 1 of 13)	33709.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	3.59112054553052	3.65439722867332	2.81259152141908	3.27528053206276	3.49956568400088	3.31029529084804	3.77752000272294	3.5313824283895	0.258557269155787	0.636080082562182	0.982417279970648
Merged-chr10-89485118-2	chr10	89485018	89485218	+	969.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009108, intron 2 of 8)	intron (NM_009108, intron 2 of 8)	21540.0	NM_001163700	20186.0	Mm.3095	NM_009108	ENSMUSG00000047638	Nr1h4	AI957360|Fxr|HRR1|RIP14|Rxrip14	nuclear receptor subfamily 1, group H, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-49946386-2	chr16	49946286	49946486	+	585.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9444.0	NR_153658	100503490.0	Mm.72499	NR_153658		Gm19723	-	predicted gene, 19723	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-31121800-4	chr6	31121701	31121901	+	924.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110471, intron 3 of 3)	intron (NR_110471, intron 3 of 3)	-58708.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-135440296-4	chr3	135440200	135440400	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356598, intron 2 of 8)	intron (NM_001356598, intron 2 of 8)	1174.0	NM_001356597	66105.0	Mm.49884	NM_025356	ENSMUSG00000078578	Ube2d3	1100001F19Rik|9430029A22Rik|AA414951	ubiquitin-conjugating enzyme E2D 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-122108482-2	chr14	122108382	122108582	+	768.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_080556, intron 1 of 16)	intron (NM_080556, intron 1 of 16)	1400.0	NM_080556	68059.0	Mm.275191	NM_080556	ENSMUSG00000025544	Tm9sf2	1500001N15Rik|AA536814|D14Ertd64e|P76	transmembrane 9 superfamily member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-87443826-4	chr12	87443712	87443912	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026958)	promoter-TSS (NM_026958)	27.0	NM_001102565	211064.0	Mm.486235	NM_001102565	ENSMUSG00000079036	Alkbh1	2700073G19Rik|Abh|Alkbh|alkB|hABH	alkB homolog 1, histone H2A dioxygenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-156003735-1	chr1	156003635	156003835	+	666.0	f1_c57bl6.idr	TTS (NM_001160019)	TTS (NM_001160019)	-30480.0	NM_001039184	74081.0	Mm.260247	NM_001039184	ENSMUSG00000033671	Cep350	4933409L06Rik|6430546F08Rik	centrosomal protein 350	protein-coding	0.436877432733316	0.0675878563213845	0.0614747427025013	0.950448675896324	0.331976304371151	0.0689633715467178	0.249634141206225	0.0575725075181452	-1.84764427326787	0.369952258874609	1
Merged-chr17-13010813-2	chr17	13010713	13010913	+	608.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013671, intron 3 of 4)	B2_Mm1t|SINE|B2	2974.0	NM_013671	20656.0	Mm.290876	NM_013671	ENSMUSG00000006818	Sod2	MnSOD|Sod-2	superoxide dismutase 2, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-50974020-4	chr6	50973932	50974132	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	197917.0	NR_045984	319981.0	Mm.131454	NR_045984	ENSMUSG00000107667	C530044C16Rik	-	RIKEN cDNA C530044C16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-33005722-6	chr13	33005535	33005735	+	768.277771	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009256, intron 1 of 6)	intron (NM_009256, intron 1 of 6)	1094.0	NM_009256	20723.0	Mm.245041	NM_009256	ENSMUSG00000045827	Serpinb9	BB283241|CAP-3|CAP3|PI-9|PI9|Spi6|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 9	protein-coding	0.263530058194313	0.0501711362399764	0.196000269318827	0.0433871183711623	0.448506878900323	0.218918791877258	0.331567791588375	0.184103930059959	1.49124834799259	0.438045790430852	1
Merged-chr4-41760424-4	chr4	41760325	41760525	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001172054)	promoter-TSS (NM_001172054)	-18.0	NM_001163401	16157.0	Mm.193451	NM_010549	ENSMUSG00000073889	Il11ra1	AI314697|GP130|Il-11ra|Il11ra|Il11ra2|NR1	interleukin 11 receptor, alpha chain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-51829486-4	chr12	51829387	51829587	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144788)	promoter-TSS (NM_144788)	49.0	NM_144788	207304.0	Mm.249391	NM_144788	ENSMUSG00000035247	Hectd1	A630086P08Rik|AI844876|b2b327Clo|opm	HECT domain E3 ubiquitin protein ligase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-65561945-2	chr16	65561845	65562045	+	955.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026879, intron 1 of 5)	intron (NM_026879, intron 1 of 5)	752.0	NM_026879	68942.0	Mm.432944	NM_026879	ENSMUSG00000004843	Chmp2b	1190006E07Rik	charged multivesicular body protein 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-45897307-2	chr1	45897207	45897407	+	796.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR31D_MM|LTR|ERVK	28287.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-121598303-1	chr9	121598203	121598403	+	623.0	f1_c57bl6.idr	intron (NR_040740, intron 1 of 3)	intron (NR_040740, intron 1 of 3)	11283.0	NR_040740	75384.0	Mm.445955	NR_040740	ENSMUSG00000084995	Lyzl4os	4930589B17Rik|4930596M17Rik	lysozyme-like 4, opposite strand	ncRNA	-0.762815510770208	-0.888810099978931	-0.89605646336994	-0.378435724824249	-0.901135071873698	-0.886197275572406	-0.895452375767285	-0.735451535779862	-1.91440903337127	0.505076966137192	1
Merged-chr11-29787046-4	chr11	29786949	29787149	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146016, intron 24 of 41)	intron (NM_146016, intron 24 of 41)	38619.0	NM_176829	216622.0	Mm.443260	NM_176829	ENSMUSG00000078157	4931440F15Rik	Fem1ab	RIKEN cDNA 4931440F15 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-29989760-4	chr16	29989644	29989844	+	919.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10620.0	NR_037689	328657.0	Mm.425982	NM_001033403		Gm1968	-	predicted gene 1968	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-114249290-3	chr2	114249191	114249391	+	624.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47859.0	NM_175466	228491.0	Mm.132523	NM_175466	ENSMUSG00000040321	Zfp770	6430601A21Rik|Znf770	zinc finger protein 770	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-16407912-4	chr19	16407813	16408013	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27754.0	NM_008137	14675.0	Mm.313181	NM_008137	ENSMUSG00000024697	Gna14	AU023208	guanine nucleotide binding protein, alpha 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-9181231-4	chr13	9181129	9181329	+	981.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	87348.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-42131338-4	chr19	42131258	42131458	+	918.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2365.0	NM_027106	69534.0	Mm.30060	NM_027106	ENSMUSG00000018821	Avpi1	2310008N12Rik|AA410041|VIT32|esu|mVIT32	arginine vasopressin-induced 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-132589746-3	chr7	132589643	132589843	+	654.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9894.0	NM_009123	20231.0	Mm.334281	NM_009123	ENSMUSG00000048528	Nkx1-2	Nkx-1.1|Nkx-1.2|Sax1	NK1 homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-32924865-4	chr17	32924750	32924950	+	999.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_130882, exon 13 of 13)	exon (NM_130882, exon 13 of 13)	-7494.0	NM_001357788	64385.0	Mm.486449	NM_022434	ENSMUSG00000024292	Cyp4f14	1300014O15Rik|cyp4f-14	cytochrome P450, family 4, subfamily f, polypeptide 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-37751666-2	chr18	37751573	37751773	+	758.5	f0_balb.idr|f1_balb.idr	promoter-TSS (NM_033579)	promoter-TSS (NM_033579)	-106.0	NM_033579	93704.0	Mm.247203	NM_033579	ENSMUSG00000104063	Pcdhgb7	-	protocadherin gamma subfamily B, 7	protein-coding	1.18084489578251	0.774870002290667	0.761410472671008	0.750881757885726	1.1915166277986	1.61391443309049	1.43418053832491	1.76314699631392	2.95867906852422	0.0453778437340061	0.306671067848632
Merged-chr15-73182583-2	chr15	73182483	73182683	+	997.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153178, intron 1 of 18)	intron (NM_153178, intron 1 of 18)	2364.0	NM_153178	239528.0	Mm.23095	NM_153178	ENSMUSG00000036698	Ago2	1110029L17Rik|2310051F07Rik|AI225898|AL022874|AW546247|Eif2c2|Gerp95|Gm10365|mKIAA4215	argonaute RISC catalytic subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-12937238-2	chr7	12937138	12937338	+	695.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1C|Other|Other	9822.0	NM_029809	381845.0	Mm.439896	NM_029809	ENSMUSG00000033967	Rnf225	2310014L17Rik|AV237412|C77118	ring finger protein 225	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-73649720-2	chr16	73649620	73649820	+	810.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	692347.0	NR_030464	751561.0		NR_030464	ENSMUSG00000104758	Mir691	Mirn691|mir-691|mmu-mir-691	microRNA 691	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-88641213-2	chr17	88641113	88641313	+	630.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029858, intron 2 of 3)	intron (NM_029858, intron 2 of 3)	14658.0	NM_029858	77057.0	Mm.482203	NM_029858	ENSMUSG00000033855	Ston1	4921524J06Rik|C86231|Salf|Sblf	stonin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-88817296-2	chr15	88817196	88817396	+	557.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001142357, intron 1 of 9)	intron (NM_001142357, intron 1 of 9)	2022.0	NM_001142357	223774.0	Mm.41512	NM_145477	ENSMUSG00000035845	Alg12	ECM39	asparagine-linked glycosylation 12 (alpha-1,6-mannosyltransferase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-11411923-4	chr16	11411813	11412013	+	926.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290148, intron 1 of 13)	RLTR20C2_MM|LTR|ERVK	6265.0	NM_001290148	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135774610-1	chr5	135774510	135774710	+	548.0	f1_balb.idr	intron (NM_029659, intron 1 of 8)	MTD|LTR|ERVL-MaLR	3691.0	NM_001289554	76571.0	Mm.247666	NM_029659	ENSMUSG00000019178	Styxl1	1700011C14Rik|Dusp24|Mkstyx	serine/threonine/tyrosine interacting-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46075928-4	chr19	46075842	46076042	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053086)	promoter-TSS (NM_053086)	95.0	NM_001039351	70769.0	Mm.402190	NM_053086	ENSMUSG00000015176	Nolc1	NOPP130|NOPP140|P130	nucleolar and coiled-body phosphoprotein 1	protein-coding	6.37277617128333	6.01187609546336	6.04285532859926	6.62651777240215	6.66814093814398	6.61156371390749	6.34399983566864	6.81328410542134	0.353537748821667	0.101190388137676	0.494828988708111
Merged-chr5-32138574-4	chr5	32138475	32138675	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008037, intron 1 of 3)	intron (NM_008037, intron 1 of 3)	2103.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-120949276-3	chr4	120949254	120949454	+	800.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001005788, exon 2 of 6)	exon (NM_001005788, exon 2 of 6)	2347.0	NM_001005788	381549.0	Mm.331840	NM_001005788	ENSMUSG00000064141	Zfp69	Gm1029|Krab2|Zfp63	zinc finger protein 69	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-3571004-1	chr17	3570904	3571104	+	683.0	f1_balb.idr	Intergenic	Intergenic	13180.0	NR_045302	68230.0	Mm.431352	NR_045302		1700102H20Rik	-	RIKEN cDNA 1700102H20 gene	ncRNA	0.815113393978084	-0.017064134048346	-0.0224767359950113	0.278741454210165	0.241055129089951	-0.0158445048155326	-0.0212826477886577	0.141638289657487	-1.75719913747801	0.409589537281374	1
Merged-chr13-37772890-4	chr13	37772815	37773015	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53123.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28367823-2	chr7	28367723	28367923	+	747.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001083912, exon 9 of 19)	exon (NM_001083912, exon 9 of 19)	4839.0	NM_138752	101497.0	Mm.235700	NM_138752	ENSMUSG00000037552	Plekhg2	AI194308|Clg|Cslg	pleckstrin homology domain containing, family G (with RhoGef domain) member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-170154662-2	chr2	170154562	170154762	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11987.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-19587849-4	chr10	19587744	19587944	+	902.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-4105.0	NM_010511	15979.0	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-116827986-4	chr4	116827879	116828079	+	950.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6471.0	NM_146256	242642.0	Mm.279897	NM_146256	ENSMUSG00000043155	Hpdl	A830048M07Rik|BC034099|Gloxd1	4-hydroxyphenylpyruvate dioxygenase-like	protein-coding	2.82928244762891	2.12397790857456	1.27809598792796	1.68492051893824	2.48183632026849	2.13984286865185	1.74327647094981	2.34874547853023	0.171709533851985	0.861845750745597	0.998431161219273
Merged-chr6-116009302-2	chr6	116009202	116009402	+	611.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-14297.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-9958054-4	chr18	9957958	9958158	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153552)	promoter-TSS (NM_153552)	-122.0	NM_153552	225160.0	Mm.219648	NM_153552	ENSMUSG00000024287	Thoc1	3110002N20Rik|AW107452|NMP-84	THO complex 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-104228444-3	chr12	104228346	104228546	+	837.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009251, intron 3 of 6)	intron (NM_009251, intron 3 of 6)	-7701.0	NM_001353612	20715.0	Mm.312628	NM_009251		Serpina3g	2A2|AI119734|Spi2-1|Spi2/eb.1|Spi2A|spi2	serine (or cysteine) peptidase inhibitor, clade A, member 3G	protein-coding	2.49459993857711	1.20691210024215	2.43290826003458	1.40835382187481	3.41290358273125	2.54688599652484	1.89260060879421	1.14215938375369	1.0485097229674	0.328515782505823	0.831054170296755
Merged-chr9-124016795-4	chr9	124016700	124016900	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5171.0	NM_009914	12771.0	Mm.57050	NM_009914	ENSMUSG00000035448	Ccr3	CC-CKR3|CKR3|Cmkbr1l2|Cmkbr3	chemokine (C-C motif) receptor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-4600946-4	chr6	4600843	4601043	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145398)	promoter-TSS (NM_145398)	-123.0	NM_145398	213819.0	Mm.270703	NM_145398	ENSMUSG00000015189	Casd1	Cas1|Cast1|SOAT	CAS1 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-134102846-4	chr5	134102759	134102959	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030719, intron 1 of 8)	intron (NM_030719, intron 1 of 8)	3111.0	NM_030719	80909.0	Mm.45218	NM_030719	ENSMUSG00000015944	Gatsl2	7530428J21Rik|AW742413|Castor2|Gats|Gatsl1	GATS protein-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-118796737-4	chr10	118796658	118796858	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	72145.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-101071864-2	chr4	101071764	101071964	+	650.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_183024, intron 1 of 11)	B1_Mus2|SINE|Alu	2826.0	NM_183024	242570.0	Mm.185636	NM_183024	ENSMUSG00000035275	Raver2	A430091O22Rik	ribonucleoprotein, PTB-binding 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-20191899-2	chr4	20191799	20191999	+	668.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290410, intron 4 of 5)	(TG)n|Simple_repeat|Simple_repeat	149847.0	NM_010281	14590.0	Mm.20461	NM_010281	ENSMUSG00000073987	Ggh	gamma-GH	gamma-glutamyl hydrolase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-20691967-2	chr14	20691867	20692067	+	584.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172596, intron 18 of 22)	intron (NM_172596, intron 18 of 22)	1332.0	NR_105911	102465571.0		NR_105911	ENSMUSG00000098602	Mir6946	Gm27799|mmu-mir-6946	microRNA 6946	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35222452-4	chr17	35222360	35222560	+	820.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010909, intron 2 of 3)	intron (NM_010909, intron 2 of 3)	-12550.0	NM_001347351	66237.0	Mm.396107	NM_023179	ENSMUSG00000024403	Atp6v1g2	1500002D01Rik|Atp6g2|NG38|VAG2	ATPase, H+ transporting, lysosomal V1 subunit G2	protein-coding	2.62412780344073	2.62904548105827	1.49482847361946	2.76239563706522	2.46773096822759	2.64813180389218	2.56151655621911	2.77629998166337	0.298759936988874	0.712985775176179	0.998431161219273
Merged-chr4-142085067-6	chr4	142084795	142084995	+	875.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145402)	promoter-TSS (NM_145402)	-591.0	NM_145402	214359.0	Mm.27587	NM_145402	ENSMUSG00000040616	Tmem51	BC003277	transmembrane protein 51	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-30061123-2	chr16	30061143	30061343	+	683.625	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4114.0	NM_008235	15205.0	Mm.390859	NM_008235	ENSMUSG00000022528	Hes1	Hry|bHLHb39	hes family bHLH transcription factor 1	protein-coding	1.03646704370642	0.520364649729297	0.509413543265342	0.500850453573353	1.23976946613976	0.935366071968929	0.51184288559923	1.57576388466377	2.24953003036452	0.188378531821403	0.666715523537816
Merged-chr1-54807810-2	chr1	54807710	54807910	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081433, intron 2 of 27)	intron (NM_001081433, intron 2 of 27)	118577.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-64611657-1	chr1	64611557	64611757	+	577.0	f0_c57.idr	intron (NM_025964, intron 2 of 2)	B1_Mus1|SINE|Alu	5511.0	NM_025964	67099.0	Mm.46394	NM_025964	ENSMUSG00000025956	Mettl21a	2310038H17Rik|AI464204|Fam119a	methyltransferase like 21A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-7817176-2	chr10	7817076	7817276	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026141, intron 12 of 12)	B1F1|SINE|Alu	-15294.0	NM_172785	237256.0	Mm.140055	NM_172785	ENSMUSG00000039981	Zc3h12d	D730019B10Rik|TFL	zinc finger CCCH type containing 12D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-113483543-2	chr13	113483443	113483643	+	708.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045501, intron 3 of 6)	intron (NR_045501, intron 3 of 6)	19301.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53218263-4	chr4	53218160	53218360	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27936.0	NR_040665	78180.0	Mm.243847	NR_040665	ENSMUSG00000086947	4930522O17Rik	-	RIKEN cDNA 4930522O17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-32085565-5	chr14	32085378	32085578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_104305)	promoter-TSS (NR_104305)	-192.0	NR_104305	105638.0	Mm.2519	NM_172254	ENSMUSG00000021905	Dph3	DELGIP1|DelgipP1|Desr1|KTI11|Zcsl2	diphthamine biosynthesis 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-27542604-6	chr7	27542509	27542709	+	867.535339	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001317355, intron 3 of 13)	intron (NM_001317355, intron 3 of 13)	10609.0	NM_011116	18807.0	Mm.6483	NM_011116	ENSMUSG00000003363	Pld3	Sam-9	phospholipase D family, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3708243-4	chr19	3708148	3708348	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358258)	promoter-TSS (NM_001358258)	-45.0	NM_001358256	72056.0	Mm.23780	NM_028077	ENSMUSG00000035372	1810055G02Rik	AI256204	RIKEN cDNA 1810055G02 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-95667035-4	chr1	95666945	95667145	+	829.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159745, intron 1 of 3)	intron (NM_001159745, intron 1 of 3)	549.0	NM_009183	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-88491080-4	chr15	88490958	88491158	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-109244.0	NM_027306	70073.0	Mm.45306	NM_027306	ENSMUSG00000054117	Zdhhc25	1700030J15Rik	zinc finger, DHHC domain containing 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135255026-3	chr4	135254966	135255166	+	972.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013885, intron 1 of 5)	intron (NM_013885, intron 1 of 5)	17694.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119489465-2	chr11	119489365	119489565	+	685.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_153849, intron 1 of 3)	intron (NR_153849, intron 1 of 3)	1770.0	NR_153849	78439.0	Mm.440446	NR_153849	ENSMUSG00000109408	A930037H05Rik	Gm44935	RIKEN cDNA A930037H05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-33060349-4	chr6	33060236	33060436	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025336)	promoter-TSS (NM_025336)	-76.0	NM_025336	66075.0	Mm.21501	NM_025336	ENSMUSG00000053768	Chchd3	0610041L09Rik|1700039J09Rik|AW558177	coiled-coil-helix-coiled-coil-helix domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-147899185-3	chr5	147899095	147899295	+	829.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4380.0	NM_027872	71706.0	Mm.153218	NM_027872	ENSMUSG00000029650	Slc46a3	1200006F02Rik	solute carrier family 46, member 3	protein-coding	1.66936275524915	2.61064664960217	2.42736887478992	2.15457283994026	1.68361632046752	1.2080465846685	2.6223079663229	1.15117767165867	-1.02869126919435	0.337341863589043	0.837097850894413
Merged-chr3-55817107-4	chr3	55816977	55817177	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030595, intron 39 of 57)	intron (NM_030595, intron 39 of 57)	-30028.0	NR_033592	71182.0	Mm.195603	NR_033592	ENSMUSG00000106572	4933417G07Rik	-	SEC13 homolog pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-98081421-2	chr16	98081321	98081521	+	750.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_015491, intron 1 of 4)	intron (NR_015491, intron 1 of 4)	1018.0	NR_015491	320586.0	Mm.442230	NR_015491		A630089N07Rik	-	RIKEN cDNA A630089N07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-110887634-4	chr9	110887497	110887697	+	978.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153354, intron 8 of 25)	intron (NR_153354, intron 8 of 25)	7275.0	NM_001146060	235633.0	Mm.86338	NM_146228	ENSMUSG00000044037	Als2cl	79H19D|79H19E|BC022645|D930044G19Rik|mRn.49018	ALS2 C-terminal like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117262904-4	chr8	117262796	117262996	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	5877.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-43631071-4	chr19	43630957	43631157	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10950.0	NR_152201	100043245.0	Mm.402688	NR_152201		Gm4311	-	predicted gene 4311	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-125389305-4	chr5	125389224	125389424	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019639, intron 1 of 1)	CpG	693.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-15923632-6	chr19	15923531	15923731	+	836.111084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177420, intron 1 of 8)	MTC|LTR|ERVL-MaLR	991.0	NM_001205339	107272.0	Mm.289936	NM_177420	ENSMUSG00000024640	Psat1	D8Ertd814e|EPIP|PSA|Psat	phosphoserine aminotransferase 1	protein-coding	0.0411045606871533	0.686813637177218	0.053475005206813	0.0488303531351136	0.042255063904115	0.574328057167299	0.647457642686637	0.0496422511308207	0.776963825994448	0.72405258112623	1
Merged-chr18-39803654-3	chr18	39803553	39803753	+	796.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30156.0	NM_011033	18459.0	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127904114-4	chr7	127904027	127904227	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009739)	promoter-TSS (NM_009739)	54.0	NM_009739	12041.0	Mm.425495	NM_009739	ENSMUSG00000030802	Bckdk	AI327402	branched chain ketoacid dehydrogenase kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-17308579-2	chr6	17308479	17308679	+	643.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001243064, intron 1 of 1)	intron (NM_001243064, intron 1 of 1)	939.0	NM_001243064	12389.0	Mm.28278	NM_007616	ENSMUSG00000007655	Cav1	Cav|Cav-1	caveolin 1, caveolae protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-20187875-4	chr13	20187760	20187960	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 2 of 21)	intron (NM_080288, intron 2 of 21)	97353.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	3.44809942115312	4.24334752889438	4.16854799645172	3.93242175210633	4.28333885139494	3.98922014698616	4.73077033148496	4.2940599904225	0.50984379214994	0.242341548027136	0.739349184581178
Merged-chr5-71545618-2	chr5	71545518	71545718	+	615.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_030052, intron 1 of 2)	(GAAA)n|Simple_repeat|Simple_repeat	2587.0	NM_030052	78174.0	Mm.60690	NM_030052	ENSMUSG00000049387	Cox7b2	4930503B16Rik	cytochrome c oxidase subunit VIIb2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53066459-2	chr4	53066359	53066559	+	553.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 29 of 49)	intron (NM_013454, intron 29 of 49)	54579.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-50909191-2	chr10	50909091	50909291	+	599.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011376, intron 5 of 10)	intron (NM_011376, intron 5 of 10)	13540.0	NM_011376	20464.0	Mm.4774	NM_011376	ENSMUSG00000019913	Sim1	bHLHe14|mSIM1	single-minded family bHLH transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-125127443-4	chr4	125127327	125127527	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153159, intron 1 of 5)	intron (NM_153159, intron 1 of 5)	454.0	NM_153159	230738.0	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-152174144-2	chr4	152174044	152174244	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3956.0	NM_133348	70025.0	Mm.296191	NM_133348	ENSMUSG00000028937	Acot7	2410041A17Rik|Ach1|Act|Bach|CTE-IIa|Cte-II|Lach1	acyl-CoA thioesterase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-94630926-3	chr11	94630829	94631029	+	823.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133807, intron 1 of 6)	MIR|SINE|MIR	1105.0	NM_133807	98238.0	Mm.172720	NM_133807	ENSMUSG00000020869	Lrrc59	AA959742|C78668	leucine rich repeat containing 59	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-105696211-4	chr5	105696130	105696330	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3739.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	4.95401114899934	5.86535118452512	5.70646631185165	4.53916778588924	4.76195782032457	5.03541437405767	5.18942580179893	4.02942589259443	-0.644735014589469	0.0944035573726461	0.475550312581511
Merged-chr5-30656742-2	chr5	30656642	30656842	+	545.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175675, intron 4 of 5)	intron (NM_175675, intron 4 of 5)	8803.0	NM_175675	74919.0	Mm.247985	NM_175675	ENSMUSG00000029175	Slc35f6	4930471M23Rik|5730478O19Rik|ANT2BP|P40|Tango9	solute carrier family 35, member F6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-88655321-4	chr1	88655228	88655428	+	943.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46863.0	NM_177305	320982.0	Mm.27968	NM_177305	ENSMUSG00000049866	Arl4c	A630084M22Rik|Arl7|LAK	ADP-ribosylation factor-like 4C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95954048-2	chr3	95953948	95954148	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	24791.0	NM_023210	66471.0	Mm.218657	NM_023210	ENSMUSG00000015749	Anp32e	2810018A15Rik|AI047746|AI326868|CPD1|LANP-L|LANPL|mLANP-L	acidic (leucine-rich) nuclear phosphoprotein 32 family, member E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35159730-2	chr17	35159630	35159830	+	725.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199044, intron 11 of 30)	intron (NM_001199044, intron 11 of 30)	5147.0	NM_001199044	53761.0	Mm.272462	NM_020027	ENSMUSG00000024393	Prrc2a	3110039B05Rik|Bat-2|Bat2|D17H6S51E|G2|Wbp12|mKIAA4178	proline-rich coiled-coil 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-3251285-4	chr8	3251208	3251408	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001330056, intron 2 of 21)	intron (NM_001330056, intron 2 of 21)	28309.0	NM_010568	16337.0	Mm.268003	NM_010568	ENSMUSG00000005534	Insr	4932439J01Rik|CD220|D630014A15Rik|IR|IR-A|IR-B	insulin receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-7894863-1	chr1	7894763	7894963	+	1000.0	f0_balb.idr	Intergenic	RMER19B2|LTR|ERVK	805943.0	NM_183028	319263.0	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	1.11230096308035	2.02540188398525	1.95412532003465	1.15226349868985	2.03995012503563	2.17941050642815	2.74586850443039	2.14908872393511	1.79786837680587	0.0879531121430322	0.455902119596242
Merged-chr13-113196901-2	chr13	113196801	113197001	+	805.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12758.0	NM_023612	71690.0	Mm.38929	NM_023612	ENSMUSG00000042379	Esm1	0610042H23Rik|AV004503|ESM-1	endothelial cell-specific molecule 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-17968583-2	chr13	17968483	17968683	+	562.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24366.0	NM_019491	56044.0	Mm.27348	NM_019491	ENSMUSG00000008859	Rala	3010001O15Rik|AW322615|Ral|Rasl1	v-ral simian leukemia viral oncogene A (ras related)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3700670-2	chr19	3700570	3700770	+	662.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7623.0	NM_001358256	72056.0	Mm.23780	NM_028077	ENSMUSG00000035372	1810055G02Rik	AI256204	RIKEN cDNA 1810055G02 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-139204794-4	chr4	139204673	139204873	+	964.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	10662.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	2.75604634235516	2.57333465176164	1.23441533100113	3.20753208371276	1.40394479429931	1.28205062378648	2.11198308874441	2.70054390844987	-1.26489011469821	0.21960925786461	0.710826235364411
Merged-chr13-55327389-2	chr13	55327289	55327489	+	903.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016662, intron 4 of 5)	intron (NM_016662, intron 4 of 5)	2341.0	NM_016662	17121.0	Mm.20350	NM_016662	ENSMUSG00000021485	Mxd3	4631412E13Rik|Mad3|bHLHc13	Max dimerization protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-50870489-4	chr14	50870383	50870583	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009351)	promoter-TSS (NM_009351)	71.0	NM_009351	21745.0	Mm.318736	NM_009351	ENSMUSG00000006281	Tep1	Tp1	telomerase associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-72367394-3	chr2	72367294	72367494	+	628.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023057, intron 4 of 19)	intron (NM_023057, intron 4 of 19)	81693.0	NM_178084	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-13652351-4	chr1	13652323	13652523	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145381, intron 1 of 6)	intron (NM_145381, intron 1 of 6)	8086.0	NM_145381	212442.0	Mm.89572	NM_145381	ENSMUSG00000025937	Lactb2	Cgi-83|E430032H21Rik	lactamase, beta 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-53113970-3	chr15	53113878	53114078	+	961.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	232205.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-121803805-2	chr11	121803705	121803905	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26413.0	NM_029049	74675.0	Mm.61213	NM_029049	ENSMUSG00000039198	Ptchd3	4930451E13Rik|4933440L20Rik|RNDEu-3	patched domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-95376975-1	chr13	95376875	95377075	+	546.0	f1_balb.idr	Intergenic	RLTR10C|LTR|ERVK	-1618.0	NM_025630	66549.0	Mm.36785	NM_025630	ENSMUSG00000021681	Aggf1	2010009L17Rik|2310029P06Rik|AW112072|Peg3|VG5Q	angiogenic factor with G patch and FHA domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-91736423-4	chr12	91736330	91736530	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 3 of 6)	intron (NM_175367, intron 3 of 6)	50006.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-128652685-4	chr8	128652563	128652763	+	825.625	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	A-rich|Low_complexity|Low_complexity	-32991.0	NM_010578	16412.0	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-79243476-3	chr2	79243376	79243576	+	683.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER5A1|DNA|hAT-Charlie	-11950.0	NM_010576	16401.0	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-182281458-3	chr1	182281441	182281641	+	929.8666380000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007853, intron 1 of 2)	intron (NM_007853, intron 1 of 2)	654.0	NM_001360783	13244.0	Mm.29648	NM_007853	ENSMUSG00000038633	Degs1	AA536663|Degs|Des1|Mdes	delta(4)-desaturase, sphingolipid 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-77239687-2	chr12	77239587	77239787	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045554, intron 1 of 11)	intron (NR_045554, intron 1 of 11)	948.0	NR_045554	53618.0	Mm.35628	NM_016893	ENSMUSG00000021065	Fut8	-	fucosyltransferase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-17560159-4	chr10	17560095	17560295	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-163033.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-61121957-4	chr10	61121858	61122058	+	994.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009163, intron 3 of 14)	(GTTTG)n|Simple_repeat|Simple_repeat	25726.0	NM_009163	20397.0	Mm.412319	NM_009163	ENSMUSG00000020097	Sgpl1	AI428538|D10Xrf456|S1PL|Spl	sphingosine phosphate lyase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95676967-4	chr3	95676888	95677088	+	933.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301705, intron 17 of 17)	intron (NM_001301705, intron 17 of 17)	10929.0	NM_144899	229595.0	Mm.490574	NM_144899	ENSMUSG00000015850	Adamtsl4	ADAMTSL-4|Tsrc1	ADAMTS-like 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-103798878-2	chr2	103798778	103798978	+	640.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1238.0	NM_016739	53872.0	Mm.427589	NM_016739	ENSMUSG00000027184	Caprin1	AL022980|Caprin-1|Gpiap|Gpiap1|Mmgpip137|P137|rng105	cell cycle associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-180261413-2	chr2	180261313	180261513	+	597.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_145851, intron 6 of 9)	intron (NM_145851, intron 6 of 9)	3877.0	NR_037274	100526556.0		NR_037274	ENSMUSG00000092827	Mir3091	mir-3091|mmu-mir-3091	microRNA 3091	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-58935277-2	chr6	58935177	58935377	+	638.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_153574, exon 18 of 18)	3' UTR (NM_153574, exon 18 of 18)	-28151.0	NM_021432	58243.0	Mm.389747	NM_021432	ENSMUSG00000055430	Nap1l5	1110020M21Rik	nucleosome assembly protein 1-like 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-81433295-4	chr17	81433202	81433402	+	974.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 5 of 8)	intron (NR_104580, intron 5 of 8)	305085.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-61666792-2	chr14	61666692	61666892	+	568.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_028264, intron 1 of 6)	intron (NR_028264, intron 1 of 6)	15581.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-77750754-4	chr9	77750669	77750869	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-3766.0	NR_151778	14629.0	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-121419170-3	chr2	121419074	121419274	+	874.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007952, intron 1 of 12)	intron (NM_007952, intron 1 of 12)	5272.0	NM_007952	14827.0	Mm.263177	NM_007952	ENSMUSG00000027248	Pdia3	58kDa|ERp57|ERp60|ERp61|Erp|Grp58|PDI|PDI-Q2|PI-PLC|PLC[a]|Plca	protein disulfide isomerase associated 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-32688983-1	chr16	32688883	32689083	+	722.75	f0_balb.idr	Intergenic	Intergenic	15829.0	NM_001289443	51789.0	Mm.251115	NM_016788	ENSMUSG00000022791	Tnk2	Ack|Ack-1|Ack1|Cdgip|Pyk1	tyrosine kinase, non-receptor, 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72490639-4	chr6	72490542	72490742	+	813.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	-51084.0	NM_145569	232087.0	Mm.29815	NM_145569	ENSMUSG00000053907	Mat2a	D630045P18Rik	methionine adenosyltransferase II, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127311759-4	chr10	127311673	127311873	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001171582)	promoter-TSS (NM_001171582)	13.0	NM_001003913	216443.0	Mm.28173	NM_001003913	ENSMUSG00000040354	Mars	Metrs|Mtrns	methionine-tRNA synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-76932136-1	chr18	76932036	76932236	+	557.0	f1_balb.idr	intron (NM_025409, intron 1 of 2)	B2_Mm2|SINE|B2	2109.0	NM_025409	66191.0	Mm.28593	NM_025409	ENSMUSG00000090000	Ier3ip1	1110057H19Rik|AI644142|AL022842|AL022863|AV026606	immediate early response 3 interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-8792571-4	chr10	8792466	8792666	+	967.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 4 of 19)	intron (NM_175155, intron 4 of 19)	93504.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-57243551-2	chr16	57243451	57243651	+	743.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12085.0	NM_001358433	67581.0	Mm.257819	NM_026254	ENSMUSG00000022749	Tbc1d23	4930451A13Rik|AU015720|AU043671|AU043778|D030022P07Rik|W51689	TBC1 domain family, member 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-21621791-4	chr10	21621685	21621885	+	856.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_027968, exon 3 of 3)	non-coding (NR_027968, exon 3 of 3)	28640.0	NR_027968	67692.0	Mm.54306	NM_183266	ENSMUSG00000050844	1700020N01Rik	-	RIKEN cDNA 1700020N01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-105153489-2	chr4	105153389	105153589	+	719.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3858.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-68160048-4	chr18	68159918	68160118	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172631, intron 3 of 5)	Tigger6a|DNA|TcMar-Tigger	-67928.0	NM_001357444	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117930940-2	chr11	117930840	117931040	+	596.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	38426.0	NM_007707	12702.0	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-23009284-2	chr2	23009184	23009384	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077190, intron 1 of 10)	intron (NM_001077190, intron 1 of 10)	30957.0	NM_001077192	11308.0	Mm.205647	NM_007380	ENSMUSG00000058835	Abi1	E3B1|NAP1|Ssh3bp1|abi-1	abl-interactor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167658083-2	chr2	167657983	167658183	+	778.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145538, intron 1 of 5)	intron (NM_145538, intron 1 of 5)	3461.0	NM_145538	407243.0	Mm.4863	NM_145538	ENSMUSG00000090213	Tmem189	AI840826|Kua	transmembrane protein 189	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-161885896-3	chr1	161885805	161886005	+	905.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9223.0	NM_001357402	226551.0	Mm.170002	NM_172645	ENSMUSG00000040297	Suco	4732491B11|AI848100|AU016931|Opt	SUN domain containing ossification factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-101510797-2	chr14	101510697	101510897	+	752.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081278, intron 1 of 18)	intron (NM_001081278, intron 1 of 18)	98394.0	NM_001081278	210789.0	Mm.320639	NM_173380	ENSMUSG00000033083	Tbc1d4	5930406J04Rik|A930035N22|AV295684|As160	TBC1 domain family, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-142630514-4	chr5	142630397	142630597	+	891.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178398, intron 1 of 11)	intron (NM_178398, intron 1 of 11)	913.0	NM_178398	74781.0	Mm.29432	NM_178398	ENSMUSG00000029578	Wipi2	1110018O08Rik|2510001I10Rik	WD repeat domain, phosphoinositide interacting 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-35772753-1	chr16	35772653	35772853	+	552.0	f1_balb.idr	intron (NR_152314, intron 1 of 8)	intron (NR_152314, intron 1 of 8)	2367.0	NM_175111	66667.0	Mm.45272	NM_175111	ENSMUSG00000022849	Hspbap1	3830421G21Rik	Hspb associated protein 1	protein-coding	0.934933267277263	0.798082240822883	1.34395881227702	1.74105999902085	1.65075396705374	0.801626668548935	0.78567921403527	1.91751525891863	0.457244596767191	0.750288434908785	0.998431161219273
Merged-chr9-13311271-3	chr9	13311165	13311365	+	688.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	64309.0	NM_025534	66396.0	Mm.290620	NM_025534	ENSMUSG00000079084	Ccdc82	2310043N13Rik	coiled-coil domain containing 82	protein-coding	-0.401811444611008	-0.195131193389485	-0.393318852422099	-0.0921309956174179	-0.401023590489641	-0.388241657097718	-0.392405386696621	0.328324805676134	0.930418170857063	0.712638743094874	1
Merged-chr16-52181814-2	chr16	52181714	52181914	+	575.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033238, intron 13 of 17)	intron (NM_001033238, intron 13 of 17)	150265.0	NM_001033238	208650.0	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-92437362-3	chr6	92437236	92437436	+	938.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001134461, intron 2 of 7)	intron (NM_001134461, intron 2 of 7)	44056.0	NM_001134460	243548.0	Mm.248820	NM_001081146	ENSMUSG00000030020	Prickle2	6230400G14Rik|6720451F06Rik|mpk2	prickle planar cell polarity protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-54762846-4	chr11	54762766	54762966	+	926.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178626, intron 1 of 5)	intron (NM_178626, intron 1 of 5)	24837.0	NM_178626	72729.0	Mm.29476	NM_178626	ENSMUSG00000052298	Cdc42se2	2810404F18Rik|AA408783|AA536669|SPEC2	CDC42 small effector 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180604779-3	chr1	180604676	180604876	+	604.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17575.0	NR_105869	102466761.0		NR_105869	ENSMUSG00000098926	Mir6904	Gm27426|mmu-mir-6904	microRNA 6904	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41331001-1	chr19	41330901	41331101	+	1000.0	f1_c57bl6.idr	intron (NM_031376, intron 3 of 16)	intron (NM_031376, intron 3 of 16)	54069.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	-0.140760639099153	0.629577320713729	-0.129173298842154	0.526407071114214	0.0158613328649647	-0.122299689597694	-0.127933754359638	-0.132757909504751	-3.11757451876236	0.175154454571145	1
Merged-chr2-5860623-4	chr2	5860520	5860720	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016918, intron 3 of 9)	intron (NM_016918, intron 3 of 9)	2314.0	NR_152181	791411.0	Mm.442531	NR_152181		Gm13199	-	predicted gene 13199	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115134933-4	chr5	115134824	115135024	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175352)	promoter-TSS (NM_175352)	51.0	NM_175352	106840.0	Mm.29241	NM_175352	ENSMUSG00000046562	Unc119b	AA407659|AI414892	unc-119 lipid binding chaperone B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-61488362-2	chr18	61488262	61488462	+	648.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR33A|LTR|ERVL	-3755.0	NR_045419	442846.0	Mm.417648	NR_045419		A530050N04Rik	-	RIKEN cDNA A530050N04 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-105307822-1	chr13	105307722	105307922	+	546.0	f1_balb.idr	Intergenic	RMER4A|LTR|ERVK	-13337.0	NM_001360891	71816.0	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5654053-2	chr17	5653953	5654153	+	751.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 2 of 8)	intron (NM_146073, intron 2 of 8)	-144604.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-71275490-4	chr2	71275342	71275542	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172436, intron 17 of 17)	intron (NM_172436, intron 17 of 17)	63496.0	NM_010064	13427.0	Mm.249479	NM_010064	ENSMUSG00000027012	Dync1i2	3110079H08Rik|AW554389|Dncic2	dynein cytoplasmic 1 intermediate chain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-45840598-3	chr2	45840497	45840697	+	876.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	143992.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-47691778-5	chr8	47691626	47691826	+	943.099976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C|LTR|ERVK	-16567.0	NM_023503	69260.0	Mm.430733	NM_023503	ENSMUSG00000063049	Ing2	2810011M06Rik|Ing1l|Ing2b|P33ING2	inhibitor of growth family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-128597481-3	chr1	128597424	128597624	+	769.277771	f0_balb.idr|f0_c57.idr|f1_balb.idr	Intergenic	Intergenic	-5225.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	1.9495737697922	2.42527647654262	1.38767735457266	3.80477832395701	2.28753890096814	3.91512653853651	1.95840342232977	3.67715266090272	0.776880838908659	0.383998615463442	0.875009253291411
Merged-chr17-33910998-2	chr17	33910898	33911098	+	757.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355704, intron 2 of 7)	B1_Mus1|SINE|Alu	1397.0	NM_001199733	13163.0	Mm.271809	NM_007829	ENSMUSG00000002307	Daxx	-	Fas death domain-associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94345732-3	chr10	94345620	94345820	+	861.7222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 1 of 4)	intron (NM_001359762, intron 1 of 4)	33771.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	2.63446030278758	1.97751683368924	3.55634983474823	3.36123635555602	1.32477929026171	1.19925642732551	1.15441955577734	1.84614694122741	-3.79940239654421	0.000283225651474332	0.00704225436160251
Merged-chr7-81835618-4	chr7	81835515	81835715	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6184.0	NM_146193	83962.0	Mm.439893	NM_146193	ENSMUSG00000025103	Btbd1	1190005H08Rik	BTB (POZ) domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-61631108-1	chr2	61631008	61631208	+	590.0	f0_balb.idr	non-coding (NR_149323, exon 6 of 10)	non-coding (NR_149323, exon 6 of 10)	38011.0	NR_149323	21353.0	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-58248221-2	chr15	58248121	58248321	+	602.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33329.0	NM_026346	67731.0	Mm.25683	NM_026346	ENSMUSG00000022358	Fbxo32	4833442G10Rik|AI430017|ATROGIN1|Gm20361|MAFbx	F-box protein 32	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-16140804-4	chr19	16140701	16140901	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008139, intron 1 of 6)	intron (NM_008139, intron 1 of 6)	7970.0	NM_008139	14682.0	Mm.439701	NM_008139	ENSMUSG00000024639	Gnaq	1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI	guanine nucleotide binding protein, alpha q polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-68709466-2	chr7	68709366	68709566	+	673.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39772.0	NM_001042592	66412.0	Mm.251199	NM_025549	ENSMUSG00000042659	Arrdc4	2410003C09Rik|AV216361	arrestin domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-23706902-4	chr17	23706820	23707020	+	974.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19416.0	NM_023058	268930.0	Mm.182193	NM_023058	ENSMUSG00000023908	Pkmyt1	6230424P17|AW209059|Myt1	protein kinase, membrane associated tyrosine/threonine 1	protein-coding	2.49558263682355	4.8731965932842	4.9094335888033	3.76169360195095	3.43623518829288	4.98137815300246	4.29416193113365	3.53549624941284	-0.132073949581562	0.822941133873595	0.998431161219273
Merged-chr4-145246365-3	chr4	145246229	145246429	+	988.8666380000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011610, intron 1 of 9)	intron (NM_011610, intron 1 of 9)	541.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-136156364-2	chr1	136156264	136156464	+	716.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039472, intron 15 of 34)	intron (NM_001039472, intron 15 of 34)	24974.0	NR_153829	16565.0	Mm.276135	NM_019962	ENSMUSG00000041642	Kif21b	2610511N21Rik|mKIAA0449	kinesin family member 21B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-103175244-1	chr9	103175144	103175344	+	613.0	f0_c57.idr	intron (NM_173781, intron 7 of 7)	intron (NM_173781, intron 7 of 7)	26821.0	NM_009275	20818.0	Mm.273053	NM_009275	ENSMUSG00000032553	Srprb	AA409543	signal recognition particle receptor, B subunit	protein-coding	1.15314233768775	1.75556004966756	1.69342665642778	0.994108173841009	1.67747398971141	1.89445677391986	1.23419936419352	1.96287232531391	0.927375090262597	0.430466314939665	0.904223090525788
Merged-chr11-70435548-2	chr11	70435448	70435648	+	779.0500490000001	f1_balb.idr|f1_c57bl6.idr	exon (NM_001271360, exon 2 of 16)	exon (NM_001271360, exon 2 of 16)	-2707.0	NR_106064	102465670.0		NR_106064	ENSMUSG00000099109	Mir7115	Gm27902|mmu-mir-7115	microRNA 7115	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-74153933-2	chr1	74153833	74154033	+	583.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009909)	promoter-TSS (NM_009909)	-61.0	NM_009909	12765.0	Mm.234466	NM_009909	ENSMUSG00000026180	Cxcr2	CD128|CDw128|Cmkar2|Gpcr16|IL-8Rh|IL-8rb|IL8RA|Il8rb|mIL-8RH	chemokine (C-X-C motif) receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-60697692-3	chr11	60697587	60697787	+	874.2777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-2003.0	NM_001159405	16897.0	Mm.285453	NM_008502	ENSMUSG00000020536	Llgl1	AI325176|Lgl1|Llglh|Mgl1	LLGL1 scribble cell polarity complex component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-103367220-2	chr15	103367120	103367320	+	857.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010577)	promoter-TSS (NM_010577)	-429.0	NM_001314041	16402.0	Mm.16234	NM_010577	ENSMUSG00000000555	Itga5	Cd49e|Fnra|VLA5	integrin alpha 5 (fibronectin receptor alpha)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-84890082-4	chr2	84889956	84890156	+	999.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3364.0	NM_199223	269295.0	Mm.86447	NM_199223	ENSMUSG00000050896	Rtn4rl2	Ngr2|Ngrh1|Ngrl3	reticulon 4 receptor-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-3770124-1	chr9	3770024	3770224	+	545.0	f1_c57bl6.idr	intron (NM_001033322, intron 5 of 7)	L1_Mus2|LINE|L1	237775.0	NM_001033322	234889.0	Mm.91240	NM_001033322	ENSMUSG00000041624	Gucy1a2	6330407I18Rik|A230060L24Rik	guanylate cyclase 1, soluble, alpha 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-76217299-4	chr14	76217191	76217391	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34171.0	NR_152108	72893.0	Mm.233565	NR_152108		2900040C04Rik	-	RIKEN cDNA 2900040C04 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-139235035-4	chr7	139234925	139235125	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027164, intron 8 of 10)	intron (NM_027164, intron 8 of 10)	-13457.0	NM_001033206	101631.0	Mm.334300	NM_001033206	ENSMUSG00000060260	Pwwp2b	AI594893|D7Ertd517e|D930023J19Rik|Pwwp2	PWWP domain containing 2B	protein-coding	5.31327449590269	6.23119301220741	5.532729023506	4.97170353122235	5.06462633183899	5.49590465674342	4.85412911226832	3.51555969123553	-0.80248185842375	0.0463667393301492	0.311018340560826
Merged-chr2-140327100-2	chr2	140327000	140327200	+	574.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033296, intron 2 of 19)	intron (NM_001033296, intron 2 of 19)	62610.0	NM_001033296	228684.0	Mm.486585	NM_001033296	ENSMUSG00000074764	Sel1l2	Gm118	sel-1 suppressor of lin-12-like 2 (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115064897-2	chr11	115064797	115064997	+	971.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-2858.0	NM_172050	217306.0	Mm.222667	NM_172050	ENSMUSG00000048498	Cd300e	BC034097|CLM2|Cd300le|TREM5	CD300E molecule	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-6339935-3	chr15	6339831	6340031	+	821.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001008702, intron 1 of 13)	intron (NM_001008702, intron 1 of 13)	40142.0	NM_001008702	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-17929827-1	chr16	17929727	17929927	+	607.0	f1_c57bl6.idr	Intergenic	Intergenic	-1608.0	NM_153150	13358.0	Mm.229291	NM_153150	ENSMUSG00000003528	Slc25a1	1300019P08Rik|2610100G11Rik|AI194714|Ctp|Dgsj|Slc20a3	solute carrier family 25 (mitochondrial carrier, citrate transporter), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-12650365-4	chr13	12650252	12650452	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_003568)	promoter-TSS (NR_003568)	43.0	NR_003568	664862.0	Mm.415635	NR_003568		Gpr137b-ps	2310041G17Rik	G protein-coupled receptor 137B, pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19559426-2	chr7	19559326	19559526	+	619.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_199149, intron 1 of 12)	intron (NM_199149, intron 1 of 12)	2972.0	NM_199149	232947.0	Mm.219662	NM_199149	ENSMUSG00000051403	Ppp1r37	Gm158|Lrrc68	protein phosphatase 1, regulatory subunit 37	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97575885-4	chr11	97575786	97575986	+	845.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018873)	promoter-TSS (NM_018873)	-760.0	NM_018873	56013.0	Mm.342665	NM_018873	ENSMUSG00000038453	Srcin1	P140|SNIP|mKIAA1684|p140Cap	SRC kinase signaling inhibitor 1	protein-coding	2.66717436985016	3.70809116136524	2.02809244462789	3.43396125041605	2.47579209156964	2.12002169458087	2.24292277996779	3.45107233604568	-0.726853964136665	0.349533316296333	0.850169745988882
Merged-chr6-7258918-2	chr6	7258818	7259018	+	549.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2B2|LINE|L1	-296143.0	NM_009311	21333.0	Mm.1440	NM_009311	ENSMUSG00000061762	Tac1	4930528L02Rik|NK-1|NK1|Nkna|PPT-A|PPTA|SP	tachykinin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-62175255-2	chr18	62175153	62175353	+	737.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4728.0	NM_007420	11555.0	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-11185902-2	chr8	11185802	11186002	+	555.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-126903.0	NM_009932	12827.0	Mm.181021	NM_009932	ENSMUSG00000031503	Col4a2	Col4a-2	collagen, type IV, alpha 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-53796068-3	chr11	53795961	53796161	+	938.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033332, intron 3 of 3)	intron (NR_033332, intron 3 of 3)	25588.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-8359616-3	chr12	8359461	8359661	+	954.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	46128.0	NM_021429	58240.0	Mm.309954	NM_021429	ENSMUSG00000020605	Hs1bp3	-	HCLS1 binding protein 3	protein-coding	0.859303298852289	0.971431679770328	1.18017922624475	0.598933831561936	1.07920591532107	0.979484723441099	1.07561927534143	0.600091517383778	0.145254372756607	0.923282592506651	1
Merged-chr2-160364593-1	chr2	160364493	160364693	+	551.0	f0_balb.idr	3' UTR (NM_010658, exon 1 of 1)	3' UTR (NM_010658, exon 1 of 1)	2472.0	NM_010658	16658.0	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-22625096-3	chr9	22624970	22625170	+	769.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360259, intron 9 of 22)	intron (NM_001360259, intron 9 of 22)	149355.0	NM_181316	319845.0	Mm.176725	NM_178415	ENSMUSG00000035919	Bbs9	E130103I17Rik	Bardet-Biedl syndrome 9 (human)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-142814305-2	chr5	142814205	142814405	+	711.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178242, intron 2 of 15)	intron (NM_178242, intron 2 of 15)	3082.0	NM_178242	231861.0	Mm.354649	NM_178242	ENSMUSG00000039477	Tnrc18	BC025631|EG381742|Zfp469	trinucleotide repeat containing 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-54646583-2	chr14	54646519	54646719	+	739.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019567, intron 5 of 12)	intron (NM_019567, intron 5 of 12)	-3509.0	NR_105913	102466771.0		NR_105913	ENSMUSG00000106169	Mir6948	mmu-mir-6948	microRNA 6948	ncRNA	0.616405829175786	0.352010364392203	0.343800195605194	0.908848537343299	0.328344488742344	1.13024381519592	0.962963815735491	0.33854004727104	0.911235617569806	0.622109413406907	1
Merged-chr19-45023944-2	chr19	45023844	45024044	+	935.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_145503, exon 3 of 5)	exon (NM_145503, exon 3 of 5)	5809.0	NM_001130526	226154.0	Mm.28204	NM_145503	ENSMUSG00000035342	Lzts2	BC014695|LAPSER1|mKIAA1813	leucine zipper, putative tumor suppressor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56303250-4	chr17	56303126	56303326	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010931)	promoter-TSS (NM_010931)	-111.0	NM_010931	18140.0	Mm.42196	NM_010931	ENSMUSG00000001228	Uhrf1	AL022808|ICBP90|Np95|RNF106	ubiquitin-like, containing PHD and RING finger domains, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124737192-4	chr6	124737100	124737300	+	964.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077705, intron 1 of 15)	MIRb|SINE|MIR	1509.0	NM_001077705	15170.0	Mm.271799	NM_013545	ENSMUSG00000004266	Ptpn6	70Z-SHP|Hcph|PTPTY-42|Ptp1C|SH-PTP1|SHP-1|hcp|me	protein tyrosine phosphatase, non-receptor type 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-26843604-1	chr1	26843504	26843704	+	577.0	f1_c57bl6.idr	Intergenic	RMER17D2|LTR|ERVK	-156144.0	NM_001033764	210940.0	Mm.297614	NM_001033764	ENSMUSG00000073722	4931408C20Rik	-	RIKEN cDNA 4931408C20 gene	protein-coding	0.348694502630192	1.0192406159562	0.966364310533561	0.359133498778891	0.641810593132323	0.375260966032563	1.08454048178384	0.360227580159854	-0.326872754889243	0.859343573758335	1
Merged-chr7-88284142-1	chr7	88284042	88284242	+	688.0	f1_c57bl6.idr	intron (NM_009982, intron 2 of 6)	intron (NM_009982, intron 2 of 6)	6057.0	NM_001311790	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	1.49271291844806	2.00221061347049	1.09703089877456	0.70685286947925	0.460089885692104	0.509415492763298	0.493877938744019	0.480242283381895	-4.97615722546781	0.00220738415570745	0.0359188902805307
Merged-chr17-25285274-3	chr17	25285183	25285383	+	668.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10973.0	NM_011665	22196.0	Mm.240044	NM_011665	ENSMUSG00000015120	Ube2i	5830467E05Rik|UBC9|Ubce2i|Ubce9	ubiquitin-conjugating enzyme E2I	protein-coding	2.00899425403276	1.1041076418047	1.6975667270579	2.76273763665776	1.82514850306868	1.59219022586682	1.08438584508251	1.92472306631568	-1.06589645119816	0.347060389338027	0.847437850938575
Merged-chr11-86840066-4	chr11	86839934	86840134	+	927.44165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32374.0	NM_026191	67487.0	Mm.260627	NM_026191	ENSMUSG00000018425	Dhx40	2410016C14Rik|ARG147|DDX40|PAD	DEAH (Asp-Glu-Ala-His) box polypeptide 40	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-85035926-2	chr15	85035826	85036026	+	709.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1136.0	NM_001356617	73225.0	Mm.247535	NM_133750	ENSMUSG00000022434	Fam118a	-	family with sequence similarity 118, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-98953347-4	chr15	98953284	98953484	+	938.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011653, intron 1 of 3)	CpG	117.0	NM_011653	22142.0	Mm.405359	NM_011653	ENSMUSG00000072235	Tuba1a	Tuba-1|Tuba1	tubulin, alpha 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-67806570-1	chr14	67806470	67806670	+	646.0	f1_balb.idr	intron (NM_177780, intron 23 of 51)	intron (NM_177780, intron 23 of 51)	53175.0	NR_105857	102465310.0		NR_105857	ENSMUSG00000098866	Mir6539	Gm27464|mir-6539|mmu-mir-6539	microRNA 6539	ncRNA	1.84531744955753	0.966708659159826	0.938436744316874	1.17290258650515	3.0084664565986	1.2631768422065	2.04877217620626	1.7211033384776	2.4044257936492	0.0434285058559527	0.299041640675149
Merged-chr10-67629072-4	chr10	67628969	67629169	+	986.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57110.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70651601-2	chr11	70651501	70651701	+	742.833374	f1_balb.idr|f1_c57bl6.idr	TTS (NM_027445)	TTS (NM_027445)	3049.0	NM_011072	18643.0	Mm.2647	NM_011072	ENSMUSG00000018293	Pfn1	Pfn	profilin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-91168201-7	chr15	91168096	91168296	+	900.9761960000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011994, intron 6 of 9)	intron (NM_011994, intron 6 of 9)	23811.0	NM_011994	26874.0	Mm.295456	NM_011994	ENSMUSG00000055782	Abcd2	ABC39|ALDL1|ALDR|ALDRP	ATP-binding cassette, sub-family D (ALD), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-6784361-2	chr17	6784261	6784461	+	610.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1581.0	NM_009510	22350.0	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-107926962-2	chr7	107926862	107927062	+	641.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1VL1|LINE|L1	-6560.0	NM_146775	258771.0	Mm.451662	NM_146775	ENSMUSG00000095212	Olfr473	MOR204-4	olfactory receptor 473	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-62945339-4	chr10	62945230	62945430	+	975.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_175194, exon 9 of 9)	3' UTR (NM_175194, exon 9 of 9)	-1699.0	NR_152862	327762.0	Mm.21492	NM_177372	ENSMUSG00000036875	Dna2	Dna2l|E130315B21Rik	DNA replication helicase/nuclease 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-62224344-2	chr15	62224248	62224448	+	775.666626	f1_balb.idr|f1_c57bl6.idr	intron (NR_132746, intron 3 of 6)	intron (NR_132746, intron 3 of 6)	-4897.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	2.08879245708446	1.19419114810125	3.05374147985612	1.50925759704664	1.0578191937306	0.904896160141813	0.876173799433097	1.6756506717845	-2.77988538953173	0.0231989215588522	0.198436782934726
Merged-chr14-21049065-4	chr14	21048969	21049169	+	706.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018829, intron 1 of 8)	B3|SINE|B2	3373.0	NM_018829	55946.0	Mm.376269	NM_018829	ENSMUSG00000021824	Ap3m1	1200013D09Rik|C78982|R75378	adaptor-related protein complex 3, mu 1 subunit	protein-coding	2.50204420185285	2.98868196018359	2.50340194575061	1.41136532837871	2.32751078118363	2.7240077982739	2.73404538638259	2.19423884541647	0.0878602489588735	0.918104655977455	0.998431161219273
Merged-chr8-8690563-4	chr8	8690475	8690675	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_176849)	promoter-TSS (NM_176849)	-38.0	NM_176849	234023.0	Mm.251655	NM_176849	ENSMUSG00000040459	Arglu1	9430010O03Rik|C130008N12	arginine and glutamate rich 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-88541976-1	chr14	88541876	88542076	+	572.0	f1_c57bl6.idr	Intergenic	ORR1A2|LTR|ERVL-MaLR	-70580.0	NM_178685	219257.0	Mm.128861	NM_178685	ENSMUSG00000050505	Pcdh20	C630015B17Rik|Pcdh13	protocadherin 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-93306096-1	chr10	93305996	93306196	+	602.0	f0_balb.idr	intron (NM_001322265, intron 1 of 4)	intron (NM_001322265, intron 1 of 4)	5063.0	NM_001322268	13713.0	Mm.4454	NM_013508	ENSMUSG00000008398	Elk3	D430049E23Rik|Erp|Etrp|Net|Sap-2	ELK3, member of ETS oncogene family	protein-coding	-0.0544622203692537	0.382693203385011	-0.0384043320610657	-0.0443879382758585	-0.0529520839261474	1.10460672846698	-0.0367050648737094	0.319948125366547	2.46712004423268	0.260057032310816	1
Merged-chr1-165460578-4	chr1	165460482	165460682	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027430)	promoter-TSS (NM_027430)	-119.0	NM_028759	74106.0	Mm.227605	NM_028759	ENSMUSG00000026571	Dcaf6	1200006M05Rik|Iqwd1|PC326	DDB1 and CUL4 associated factor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-67779673-4	chr13	67779575	67779775	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028402)	promoter-TSS (NM_028402)	-18.0	NM_028402	72958.0	Mm.53849	NM_028402	ENSMUSG00000090659	Zfp493	2900054J07Rik|Rslcan12	zinc finger protein 493	protein-coding	6.39307275882512	7.16439316311629	6.29679335998635	6.58561232996414	6.45694469857693	6.71398016302023	6.30021907030836	6.61081894035687	-0.12692189989896	0.570240287290404	0.962718661854691
Merged-chr17-46033356-2	chr17	46033256	46033456	+	723.833313	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001287058)	promoter-TSS (NM_001287058)	-979.0	NM_001287057	22339.0	Mm.282184	NM_009505	ENSMUSG00000023951	Vegfa	Vegf|Vpf	vascular endothelial growth factor A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127639021-2	chr10	127638921	127639121	+	676.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3965.0	NM_009284	20852.0	Mm.121721	NM_009284	ENSMUSG00000002147	Stat6	-	signal transducer and activator of transcription 6	protein-coding	0.572090977162068	0.824699063987983	0.213372024944601	0.208640263577929	0.580718262581601	0.715379448468717	0.214724931452898	0.20946680593131	-0.219073647716265	0.911303475547011	1
Merged-chr7-122356671-4	chr7	122356571	122356771	+	985.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316672, intron 2 of 16)	L1MB2|LINE|L1	67546.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-44536645-3	chr13	44536546	44536746	+	900.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	96919.0	NR_045489	69491.0	Mm.392410	NR_045489	ENSMUSG00000098144	1700029N11Rik	-	RIKEN cDNA 1700029N11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-42875627-4	chr16	42875529	42875729	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040521)	promoter-TSS (NR_040521)	-42.0	NR_040521	75722.0	Mm.243747	NR_040521	ENSMUSG00000075070	4932412D23Rik	Gm10809	RIKEN cDNA 4932412D23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-158142712-2	chr2	158142612	158142812	+	697.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009373, intron 2 of 12)	intron (NM_009373, intron 2 of 12)	3680.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-71616287-3	chr9	71616176	71616376	+	832.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23916.0	NM_001033208	102371.0	Mm.27585	NM_001033208	ENSMUSG00000041361	Myzap	AA407270|AV006038|Gcom1|Gm640|Grinl1a7|Myozap	myocardial zonula adherens protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171823369-4	chr1	171823244	171823444	+	975.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16353.0	NM_001252472	12523.0	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	4.59515948567205	4.06836978362467	4.55315908886725	4.95534625495099	4.95088508318041	4.62634718036714	4.53539058611432	4.76181616785463	0.182529065018487	0.617948591003794	0.977517868708383
Merged-chr4-155721786-3	chr4	155721706	155721906	+	940.25	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026899, intron 2 of 4)	B2_Mm2|SINE|B2	-12998.0	NM_001101506	381582.0	Mm.379515	NM_001101506	ENSMUSG00000084845	Tmem240	EG381582|Gm5151	transmembrane protein 240	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-62846725-2	chr4	62846625	62846825	+	851.3333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-118849.0	NM_028326	72701.0	Mm.26479	NM_028326	ENSMUSG00000028358	Zfp618	2810031P15Rik|2810040O04Rik|AI415580|AI505139|D430033D05Rik|Nedd10|Znf618|bM257P7.1	zinc finger protein 618	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-60553418-2	chr2	60553318	60553518	+	686.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008867)	promoter-TSS (NM_008867)	-110.0	NM_008867	18779.0	Mm.5092	NM_008867	ENSMUSG00000054580	Pla2r1	Pla2-r|Pla2g1br|Pla2r	phospholipase A2 receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-12202549-2	chr15	12202449	12202649	+	744.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	-2479.0	NM_001356498	268783.0	Mm.54460	NM_172958	ENSMUSG00000039458	Mtmr12	3Pap|4932703C11|C730015A02Rik|Pip3ap|mKIAA1682	myotubularin related protein 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116061900-2	chr11	116061800	116062000	+	591.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_172569)	TTS (NM_172569)	16061.0	NM_001009573	70450.0	Mm.259460	NM_001009573	ENSMUSG00000057948	Unc13d	2610108D09Rik|Jinx|Munc13-4|mFLJ00067	unc-13 homolog D (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-100247176-4	chr13	100247063	100247263	+	997.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010870, intron 1 of 14)	intron (NM_010870, intron 1 of 14)	173.0	NM_010870	17951.0	Mm.290476	NM_010870	ENSMUSG00000071203	Naip5	Birc1e|Lgn1|Naip-rs3	NLR family, apoptosis inhibitory protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-20172416-4	chr13	20172328	20172528	+	844.2333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 1 of 21)	MTA_Mm|LTR|ERVL-MaLR	81921.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116775613-2	chr11	116775513	116775713	+	782.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011371)	promoter-TSS (NM_011371)	-106.0	NM_011371	20445.0	Mm.436887	NM_011371	ENSMUSG00000009588	St6galnac1	Siat7a	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-9935098-2	chr19	9934998	9935198	+	654.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35565.0	NM_016692	16319.0	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	-1.56355737717652	-1.81244775989375	-1.82128546162293	-1.82854501295842	-1.83962066705452	-1.81053259306168	-1.81928479966835	-1.82724555674025	-1.28500227969968	0.715751224811686	1
Merged-chr7-15913930-1	chr7	15913830	15914030	+	542.0	f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	8441.0	NM_009156	20364.0	Mm.42829	NM_009156	ENSMUSG00000041571	Selenow	Sepw1|selW	selenoprotein W	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-105506520-4	chr11	105506412	105506612	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49777.0	NM_001039242	632687.0	Mm.121570	NM_172568	ENSMUSG00000078627	March10	4933417C16Rik|AV039223|Rnf190	membrane-associated ring finger (C3HC4) 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-158138015-4	chr2	158137915	158138115	+	924.658325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009373, intron 3 of 12)	intron (NM_009373, intron 3 of 12)	8377.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-185209992-2	chr1	185209892	185210092	+	667.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163754, intron 1 of 34)	MER3|DNA|hAT-Charlie	5824.0	NM_001163754	98732.0	Mm.275841	NM_172649	ENSMUSG00000039318	Rab3gap2	1110059F07Rik|2010002H18Rik|5830469C09|AI851069|AW743433|RAB3-GAP150|mKIAA0839	RAB3 GTPase activating protein subunit 2	protein-coding	-0.0756855536819622	-0.611751038130146	-0.615103977338857	-0.617683770962065	-0.151871295282166	-0.610993821005064	-0.614365349186754	-0.617233536862847	-0.272258666813033	0.925264740332385	1
Merged-chr7-35116253-2	chr7	35116153	35116353	+	715.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3040.0	NM_001287521	12606.0	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124717778-2	chr5	124717678	124717878	+	739.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011596, intron 15 of 19)	intron (NM_011596, intron 15 of 19)	-7307.0	NM_019536	56087.0	Mm.261014	NM_019536	ENSMUSG00000038011	Dnah10	Dnahc10	dynein, axonemal, heavy chain 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124862152-1	chr5	124862052	124862252	+	985.6666869999999	f1_balb.idr	promoter-TSS (NM_144819)	promoter-TSS (NM_144819)	69.0	NM_144819	215707.0	Mm.389693	NM_144819	ENSMUSG00000037979	Ccdc92	AW050178|D5Bwg0834e	coiled-coil domain containing 92	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70541141-4	chr8	70541053	70541253	+	988.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007924, intron 1 of 11)	intron (NM_007924, intron 1 of 11)	1478.0	NM_007924	13716.0	Mm.271973	NM_007924	ENSMUSG00000070002	Ell	Ell1|Men	elongation factor RNA polymerase II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-87455691-2	chr6	87455591	87455791	+	627.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26697.0	NM_009756	12154.0	Mm.483321	NM_009756	ENSMUSG00000030046	Bmp10	b2b2711Clo	bone morphogenetic protein 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-5382720-4	chr6	5382621	5382821	+	795.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023048)	promoter-TSS (NM_023048)	-665.0	NM_023048	65255.0	Mm.51340	NM_023048	ENSMUSG00000042607	Asb4	8430401O13Rik|AV117194|AW060255	ankyrin repeat and SOCS box-containing 4	protein-coding	2.11441862882823	1.44769634274797	1.74802490532896	1.83172466335956	2.34441834967762	1.45587269964712	1.76082042632277	1.8407960445706	0.260227963954649	0.79816955718379	0.998431161219273
Merged-chr10-79907763-2	chr10	79907618	79907818	+	841.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198107, intron 1 of 14)	intron (NM_198107, intron 1 of 14)	1220.0	NM_001163276	216154.0	Mm.260089	NM_198107	ENSMUSG00000013833	Med16	95kDa|A630083L04|DRIP92|Thrap5|Trap95	mediator complex subunit 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-113607661-2	chr5	113607561	113607761	+	824.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35942.0	NM_001359060	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153076740-2	chr2	153076640	153076840	+	767.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_145536, intron 6 of 8)	(CA)n|Simple_repeat|Simple_repeat	10785.0	NM_145536	228788.0	Mm.299979	NM_145536	ENSMUSG00000027474	Ccm2l	-	cerebral cavernous malformation 2-like	protein-coding	-1.06997269762433	-1.30473905204845	-1.3145270772132	-1.32256725251374	-1.06385251204029	-1.30261794616352	-1.3123112828633	-1.32112806497905	0.0394047164033882	0.991001358494878	1
Merged-chr15-59457377-4	chr15	59457272	59457472	+	973.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026746, intron 4 of 6)	intron (NM_026746, intron 4 of 6)	83174.0	NM_001164604	68501.0	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-120170140-2	chr2	120170040	120170240	+	670.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_177845, exon 18 of 20)	exon (NM_177845, exon 18 of 20)	-15565.0	NM_133838	98878.0	Mm.132226	NM_133838	ENSMUSG00000027293	Ehd4	2210022F10Rik|AI197390|AI846352|AV006278|Past2	EH-domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-11464519-2	chr16	11464419	11464619	+	730.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028964, intron 13 of 20)	intron (NM_028964, intron 13 of 20)	58871.0	NM_001290148	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-80480495-4	chr17	80480417	80480617	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009231)	promoter-TSS (NM_009231)	-64.0	NM_009231	20662.0	Mm.60975	NM_009231	ENSMUSG00000024241	Sos1	4430401P03Rik|9630010N06|AI449023	SOS Ras/Rac guanine nucleotide exchange factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-69540862-2	chr13	69540706	69540906	+	702.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J2|LTR|ERVL-MaLR	-6942.0	NM_001169131	210106.0	Mm.315959	NM_198600	ENSMUSG00000034575	Papd7	LAK-1|POLK|Pols|TRF4|TRF4-1	PAP associated domain containing 7	protein-coding	1.91787951007333	2.02103656924252	2.28803128425093	2.12602257065019	1.55254979088262	1.263479962373	2.30624988077041	1.9100465368828	-0.730978609774343	0.463791082896623	0.922064436622467
Merged-chr19-16406971-2	chr19	16406871	16407071	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR11C_MM|LTR|ERVK	-28696.0	NM_008137	14675.0	Mm.313181	NM_008137	ENSMUSG00000024697	Gna14	AU023208	guanine nucleotide binding protein, alpha 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171845137-4	chr1	171845013	171845213	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289470, intron 2 of 8)	intron (NM_001289470, intron 2 of 8)	5416.0	NM_013489	12523.0	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	3.63356787046215	3.75056001561809	3.41554990735994	3.71065253063535	2.92756094407183	3.07209984609381	1.95033181935231	2.47286050912109	-1.603234092089	0.0100967861382016	0.109729384135998
Merged-chr2-122452698-4	chr2	122452620	122452820	+	960.43335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356532, intron 10 of 17)	ID_B1|SINE|B4	11900.0	NM_001356532	269346.0	Mm.29510	NM_172980	ENSMUSG00000027219	Slc28a2	2010208B10Rik|B430217P18|BB152493|Cnt2|SPNT	solute carrier family 28 (sodium-coupled nucleoside transporter), member 2	protein-coding	0.753835420777511	0.223933091648786	0.217930834057676	0.213304484166539	0.472782783000566	0.714734609427439	0.219254087479779	0.741450741328237	1.14620826045409	0.561077561908722	1
Merged-chr13-109294590-3	chr13	109294485	109294685	+	899.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011056, intron 3 of 16)	intron (NM_011056, intron 3 of 16)	-30159.0	NR_030644	100124489.0		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141616601-3	chr4	141616566	141616766	+	698.333313	f1_balb.idr|f1_c57bl6.idr	intron (NR_151462, intron 3 of 5)	intron (NR_151462, intron 3 of 5)	1967.0	NM_145987	213989.0	Mm.34891	NM_145987	ENSMUSG00000043085	Tmem82	-	transmembrane protein 82	protein-coding	2.15948385346431	3.12975421622358	3.10725897350543	2.75906313230305	3.21578008703658	2.96189147164089	2.36788256985892	1.46924315519203	-0.31530683676162	0.699771852273281	0.998431161219273
Merged-chr10-67099433-2	chr10	67099333	67099533	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2445.0	NM_178606	28193.0	Mm.41272	NM_178606	ENSMUSG00000019873	Reep3	D10Ucla1	receptor accessory protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-9127294-2	chr4	9127194	9127394	+	689.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-141999.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-21035760-4	chr19	21035663	21035863	+	918.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68947.0	NR_126458	75354.0	Mm.243873	NR_126458		4930554I06Rik	-	RIKEN cDNA 4930554I06 gene	ncRNA	0.848629832089217	0.494162196566099	0.664087595247891	1.20034929679948	0.857559348864928	0.495905695396928	0.952423261185759	0.648951895378916	-0.45535807517929	0.774701148648496	1
Merged-chr6-17646282-4	chr6	17646246	17646446	+	615.479187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007604, intron 1 of 9)	intron (NM_007604, intron 1 of 9)	9336.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	-1.84354474832578	-1.81325489144778	-1.53416061964661	-1.82993901100912	-1.8414184563789	-1.81126990231468	-1.82034119297928	-1.82859217979378	-1.52252619601533	0.665276690233728	1
Merged-chr9-108306842-4	chr9	108306767	108306967	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001313961)	promoter-TSS (NM_001313961)	70.0	NM_001313962	11848.0	Mm.757	NM_016802	ENSMUSG00000007815	Rhoa	Arha|Arha1|Arha2	ras homolog family member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-39270808-2	chr12	39270708	39270908	+	570.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	487097.0	NM_001163154	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127526876-4	chr10	127526788	127526988	+	937.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_183297, exon 2 of 2)	exon (NM_183297, exon 2 of 2)	-4444.0	NM_028230	108037.0	Mm.29890	NM_028230	ENSMUSG00000025403	Shmt2	2700043D08Rik|AA408223|AA986903|SHMT	serine hydroxymethyltransferase 2 (mitochondrial)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-79595341-2	chr10	79595241	79595441	+	677.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8205.0	NM_011583	21830.0	Mm.89197	NM_011583	ENSMUSG00000020317	Theg	-	testicular haploid expressed gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70391870-2	chr14	70391770	70391970	+	825.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021308, intron 17 of 22)	ID_B1|SINE|B4	37224.0	NM_021308	57746.0	Mm.85253	NM_021308	ENSMUSG00000033644	Piwil2	Piwil1l|mili	piwi-like RNA-mediated gene silencing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-56721998-4	chr19	56721912	56722112	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007419)	promoter-TSS (NM_007419)	-360.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107514927-2	chr9	107514877	107515077	+	809.799988	f1_balb.idr|f1_c57bl6.idr	intron (NM_001174048, intron 15 of 37)	intron (NM_001174048, intron 15 of 37)	-18968.0	NM_019704	56395.0	Mm.260153	NM_019704	ENSMUSG00000010045	Tmem115	C78915|Pl6|Pp6	transmembrane protein 115	protein-coding	1.97530425104576	2.66818643969165	2.5737653143322	1.9571322456424	1.72700943840589	1.24837873695876	1.21627121773845	2.80916549895478	-0.860468856718444	0.411634741787434	0.894597257730009
Merged-chr1-156571674-4	chr1	156571565	156571765	+	833.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001136104, intron 1 of 12)	intron (NM_001136104, intron 1 of 12)	12878.0	NM_001136104	11352.0	Mm.329515	NM_009595	ENSMUSG00000026596	Abl2	AA536808|Abll|Arg	v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)	protein-coding	2.36832483355386	2.22138664710919	3.55161304958182	2.88775028673437	2.1409013833014	2.04256121796735	2.81121998363574	2.3893639190022	-0.976754147295601	0.215706716258982	0.706180188649098
Merged-chr10-59589583-4	chr10	59589470	59589670	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033259, intron 1 of 7)	intron (NM_001033259, intron 1 of 7)	27122.0	NM_001033259	215999.0	Mm.296470	NM_001033259	ENSMUSG00000009647	Mcu	2010012O16Rik|AV064928|C10orf42|Ccdc109a|D130073L02Rik|Gm64	mitochondrial calcium uniporter	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-79340629-2	chr11	79340529	79340729	+	603.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010897, intron 1 of 57)	intron (NM_010897, intron 1 of 57)	737.0	NM_010897	18015.0	Mm.255596	NM_010897	ENSMUSG00000020716	Nf1	AW494271|Dsk9|E030030H24Rik|Mhdadsk9|Nf-1	neurofibromin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-51926839-4	chr16	51926752	51926952	+	950.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	60435.0	NR_153657	629091.0	Mm.364775	NR_153657		Gm29686	-	predicted gene, 29686	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-57352531-4	chr18	57352456	57352656	+	951.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-2177.0	NM_028447	73137.0	Mm.29889	NM_028447	ENSMUSG00000024594	Prrc1	1190002C06Rik|2310058D16Rik|3110038B19Rik|9430085A19Rik	proline-rich coiled-coil 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-6360349-3	chr15	6360256	6360456	+	927.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001008702, intron 1 of 13)	intron (NM_001008702, intron 1 of 13)	-26392.0	NM_023118	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4058428-2	chr19	4058328	4058528	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144869, intron 4 of 6)	intron (NM_144869, intron 4 of 6)	1019.0	NM_144869	225884.0	Mm.440201	NM_144869	ENSMUSG00000058216	Gstp3	-	glutathione S-transferase pi 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72379643-4	chr6	72379590	72379790	+	935.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016872, intron 1 of 2)	intron (NM_016872, intron 1 of 2)	778.0	NM_001080742	53620.0	Mm.440321	NM_016872	ENSMUSG00000073002	Vamp5	AF119384|Camp	vesicle-associated membrane protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117468832-2	chr8	117468732	117468932	+	564.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9567.0	NR_106046	102465653.0		NR_106046	ENSMUSG00000098483	Mir7078	Gm27386|mmu-mir-7078	microRNA 7078	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-27859487-4	chr3	27859361	27859561	+	941.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36907.0	NM_001164437	208613.0	Mm.59189	NM_001164437	ENSMUSG00000043164	Tmem212	E030011K20Rik|Gm564	transmembrane protein 212	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-44988922-6	chr2	44989029	44989229	+	843.680542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001355289, exon 11 of 11)	exon (NM_001355289, exon 11 of 11)	34048.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128222100-2	chr10	128221996	128222196	+	616.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3714.0	NM_008600	17339.0	Mm.31625	NM_008600	ENSMUSG00000025389	Mip	Aqp0|Cat|Cts|Hfi|Lop|MIP26|MP26|Svl|shrivelled	major intrinsic protein of lens fiber	protein-coding	1.67303787367932	1.16161894227464	1.12362855113385	2.90015093527495	2.09882248101523	2.81297853045157	1.13219081306909	3.09478921674945	1.09340257027455	0.544966900209911	0.956287659200869
Merged-chr2-167647714-2	chr2	167647614	167647814	+	707.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145538, intron 2 of 5)	MIR|SINE|MIR	13830.0	NM_145538	407243.0	Mm.4863	NM_145538	ENSMUSG00000090213	Tmem189	AI840826|Kua	transmembrane protein 189	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35834578-2	chr17	35834478	35834678	+	723.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011655, exon 4 of 4)	3' UTR (NM_011655, exon 4 of 4)	3723.0	NM_011655	22154.0	Mm.273538	NM_011655	ENSMUSG00000001525	Tubb5	AA408537|AI596182|B130022C14Rik|M(beta)5	tubulin, beta 5 class I	protein-coding	0.278124239808911	-0.257026910616788	-0.261356826164343	0.352248810523855	-0.126282191506412	-0.256049760491947	-0.260402528724687	-0.264109666493334	-2.83884623095185	0.24296205007135	1
Merged-chr16-33658950-3	chr16	33658832	33659032	+	851.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083902, intron 11 of 11)	(CA)n|Simple_repeat|Simple_repeat	-25534.0	NM_175256	77446.0	Mm.245741	NM_172934	ENSMUSG00000075254	Heg1	4632417D23Rik|5530401I02Rik|9530025L16Rik|BC038614|Gm629	heart development protein with EGF-like domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-75195842-4	chr9	75195734	75195934	+	900.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010864, intron 31 of 40)	intron (NM_010864, intron 31 of 40)	-36180.0	NM_001081322	208943.0	Mm.41339	NM_001081322	ENSMUSG00000033590	Myo5c	9130003O20Rik|BB085560|C330029I24	myosin VC	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-23789046-2	chr5	23788946	23789146	+	547.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310467, intron 2 of 13)	intron (NM_001310467, intron 2 of 13)	1335.0	NM_001310467	72772.0	Mm.133300	NM_177323	ENSMUSG00000028999	Rint1	1500019C06Rik|2810450M21Rik|Rint-1	RAD50 interactor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-86755321-2	chr17	86755213	86755413	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010137, intron 1 of 15)	CpG	1449.0	NM_010137	13819.0	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	0.83624478830254	0.876501164493665	1.36890130165653	1.44755991741244	1.27190047185527	1.56274383310983	1.5056348994799	1.45556058880544	1.15473524035028	0.38018066689325	0.871963632021681
Merged-chr12-117469554-4	chr12	117469383	117469583	+	846.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-46996.0	NM_175930	217944.0	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-73497088-2	chr2	73496988	73497188	+	779.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	-11335.0	NM_001289723	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-34033986-4	chr3	34033881	34034081	+	887.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113189, intron 1 of 16)	intron (NM_001113189, intron 1 of 16)	13902.0	NM_001113189	14359.0	Mm.259021	NM_008053	ENSMUSG00000027680	Fxr1	1110050J02Rik|9530073J07Rik|AI851072|Fxr1h|Fxr1p	fragile X mental retardation gene 1, autosomal homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-108939235-2	chr12	108939135	108939335	+	767.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_177602, intron 2 of 6)	intron (NM_177602, intron 2 of 6)	44963.0	NM_177602	212198.0	Mm.342082	NM_177602	ENSMUSG00000040877	Wdr25	B930090D16Rik	WD repeat domain 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-72584468-3	chr8	72584374	72584574	+	703.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357280, intron 4 of 4)	intron (NM_001357280, intron 4 of 4)	12651.0	NM_001357279	74166.0	Mm.212927	NM_144534	ENSMUSG00000031791	Tmem38a	1110001E17Rik|AI413399|SPR-27|TRIC-A|mg33a	transmembrane protein 38A	protein-coding	0.0434167756309831	-0.496267531085851	-0.499971334865586	-0.502823233414139	0.0546277025787766	-0.495431500287674	-0.499155146778299	-0.502325373264262	0.0419527451125213	0.988073760716967	1
Merged-chr6-89407437-2	chr6	89407337	89407537	+	603.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001167736, intron 5 of 6)	intron (NM_001167736, intron 5 of 6)	-44824.0	NM_008881	18844.0	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-43955617-2	chr16	43955541	43955741	+	709.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_027801, intron 12 of 15)	intron (NM_027801, intron 12 of 15)	23409.0	NM_001007460	332175.0	Mm.327852	NM_001007460	ENSMUSG00000036304	Zdhhc23	Gm1751|Gm779|nidd	zinc finger, DHHC domain containing 23	protein-coding	2.10666040634511	1.70187803214616	1.04858070065981	1.03080354416409	1.20927770203955	2.11558929918683	2.03897629601458	2.06955144964204	0.967399752700144	0.416204616241778	0.897020629395269
Merged-chr11-51918058-4	chr11	51918015	51918215	+	921.883301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49516.0	NM_029976	52626.0	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-55321726-6	chr13	55321438	55321638	+	923.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025596)	promoter-TSS (NM_025596)	442.0	NM_009000	19336.0	Mm.220923	NM_009000	ENSMUSG00000034789	Rab24	6530406O07Rik	RAB24, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-77932313-2	chr15	77932213	77932413	+	814.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3319.0	NM_019913	56551.0	Mm.291917	NM_019913	ENSMUSG00000005354	Txn2	2510006J11Rik|AI788873|Trx2	thioredoxin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-38106196-4	chr3	38106091	38106291	+	995.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	101928.0	NR_040541	71342.0	Mm.410782	NR_040541	ENSMUSG00000106002	5430434I15Rik	-	RIKEN cDNA 5430434I15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-111325338-4	chr8	111325259	111325459	+	819.450012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310613, intron 4 of 10)	L1M5|LINE|L1	12846.0	NM_001310613	74568.0	Mm.207971	NM_029005	ENSMUSG00000012519	Mlkl	9130019I15Rik	mixed lineage kinase domain-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-119119017-4	chr4	119118926	119119126	+	970.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011400, intron 1 of 9)	intron (NM_011400, intron 1 of 9)	10281.0	NM_011400	20525.0	Mm.21002	NM_011400	ENSMUSG00000028645	Slc2a1	Glut-1|Glut1	solute carrier family 2 (facilitated glucose transporter), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-48866713-2	chr11	48866613	48866813	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008326, exon 3 of 3)	exon (NM_008326, exon 3 of 3)	4707.0	NM_001355757	15944.0	Mm.29938	NM_008326	ENSMUSG00000046879	Irgm1	Ifggd3|Ifi1|Iigp3|Iipg3|Irgm	immunity-related GTPase family M member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91499911-2	chr2	91499811	91500011	+	596.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_172668, intron 31 of 37)	intron (NM_172668, intron 31 of 37)	-26851.0	NM_001165989	75786.0	Mm.168478	NM_029437	ENSMUSG00000040549	Ckap5	3110043H24Rik|4930432B04Rik|D730027C18Rik|T25636|mKIAA0097	cytoskeleton associated protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36149508-2	chr1	36149408	36149608	+	687.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198899, intron 38 of 40)	intron (NM_198899, intron 38 of 40)	-5195.0	NR_105862	102465540.0		NR_105862	ENSMUSG00000098752	Mir6897	Gm27652|mmu-mir-6897	microRNA 6897	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-64133639-1	chr15	64133539	64133739	+	680.0	f1_balb.idr	intron (NM_001276461, intron 15 of 28)	intron (NM_001276461, intron 15 of 28)	-73191.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	1.03843471508422	1.34812244452827	1.82882098252251	0.870444402480314	1.04565000396473	2.20393059490341	1.47275459779901	1.42350824360217	0.925097985870761	0.456649610056451	0.919264728457769
Merged-chr6-86400234-4	chr6	86400134	86400334	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER67A|LTR|ERV1	-3084.0	NM_025823	66881.0	Mm.30849	NM_025823	ENSMUSG00000029998	Pcyox1	1200015P13Rik|AI115532|AI448340|PCL1|Pcly	prenylcysteine oxidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-30036167-1	chr16	30036067	30036267	+	901.0	f1_c57bl6.idr	intron (NR_045878, intron 2 of 3)	intron (NR_045878, intron 2 of 3)	3312.0	NR_045878	71528.0	Mm.297640	NR_045878		9030404E10Rik	-	RIKEN cDNA 9030404E10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-24643031-4	chr10	24642921	24643121	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001308329, intron 24 of 24)	intron (NM_001308329, intron 24 of 24)	47579.0	NM_010217	14219.0	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	5.29292642706967	4.71405457919624	4.13212879113196	5.61650123524629	5.15720709129323	5.23415377141473	5.22112420698559	4.65667645142735	0.0288158330159136	0.937762672021487	0.998431161219273
Merged-chr5-114855404-4	chr5	114855302	114855502	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026263, intron 1 of 11)	intron (NM_026263, intron 1 of 11)	1688.0	NM_026263	67593.0	Mm.251409	NM_026263	ENSMUSG00000029564	4930519G04Rik	1700014B12Rik	RIKEN cDNA 4930519G04 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-135112839-3	chr1	135112715	135112915	+	894.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153383, intron 25 of 36)	intron (NR_153383, intron 25 of 36)	-7539.0	NM_001033409	329252.0	Mm.279594	NM_001033409	ENSMUSG00000042793	Lgr6	A530037C04Rik|D830026M09	leucine-rich repeat-containing G protein-coupled receptor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36743470-2	chr18	36743370	36743570	+	955.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010885, intron 2 of 2)	B1F|SINE|Alu	1117.0	NM_010885	17991.0	Mm.29867	NM_010885	ENSMUSG00000014294	Ndufa2	AV000592|B8|C1-B8|CI-B8	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76871373-3	chr15	76871251	76871451	+	971.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001007568)	promoter-TSS (NM_001007568)	84.0	NM_001007568	71591.0	Mm.38195	NM_001007568	ENSMUSG00000022526	Zfp251	9130001M19Rik|AV339307	zinc finger protein 251	protein-coding	1.02663717854517	0.515556964388844	0.31128495467815	0.305777842178266	0.448297954710802	0.320003141330786	0.651975046624342	0.955890506736332	0.193929494656142	0.914267834111303	1
Merged-chr3-103100922-2	chr3	103100822	103101022	+	642.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26634.0	NM_177857	329727.0	Mm.293641	NM_177857	ENSMUSG00000007379	Dennd2c	A930010I20Rik	DENN/MADD domain containing 2C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-44382970-2	chr19	44382862	44383062	+	780.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	24747.0	NM_009127	20249.0	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0.178439965729182	-0.315439305508447	0.58096397571733	-0.324654758908259	-0.33036876253916	-0.314272610055453	-0.319483690467466	-0.323950658406304	-3.82439514196963	0.127397180350474	1
Merged-chr10-43848524-2	chr10	43848424	43848624	+	658.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22617.0	NR_131055	71018.0	Mm.410796	NR_131055	ENSMUSG00000111342	4933404K13Rik	-	RIKEN cDNA 4933404K13 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33920176-2	chr16	33920076	33920276	+	972.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_010580, exon 10 of 15)	exon (NM_010580, exon 10 of 15)	46862.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-40127045-2	chr10	40126945	40127145	+	622.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 1 of 5)	intron (NM_001114332, intron 1 of 5)	15209.0	NM_028247	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-26962636-2	chr8	26962536	26962736	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14700.0	NM_001101502	353310.0	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-93356345-2	chr10	93356244	93356444	+	739.25	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	20133.0	NR_038014	432488.0	Mm.32833	NR_038014		Gm17745	Gm3546	predicted gene, 17745	ncRNA	2.48242576910644	2.51569043061756	2.04724485520916	2.17812226761521	3.34168921183064	4.24568652718603	3.07232348106023	2.97412664419387	2.11280115783813	0.00251408335010859	0.0398477467696619
Merged-chr5-28068833-2	chr5	28068733	28068933	+	713.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-2579.0	NM_153526	231070.0	Mm.30221	NM_153526	ENSMUSG00000045294	Insig1	1810013C12Rik|Insig-1	insulin induced gene 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-133709097-4	chr7	133709004	133709204	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025392)	promoter-TSS (NM_025392)	191.0	NM_009479	22276.0	Mm.3160	NM_009479	ENSMUSG00000030979	Uros	AI415298|UROIIIS|Uros3	uroporphyrinogen III synthase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-38594308-4	chr12	38594216	38594416	+	957.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045943, intron 1 of 8)	intron (NR_045943, intron 1 of 8)	20205.0	NR_045943	73867.0	Mm.78933	NR_045943	ENSMUSG00000112967	4930428E07Rik	-	RIKEN cDNA 4930428E07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-113548469-2	chr5	113548369	113548569	+	948.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1951.0	NM_177292	320916.0	Mm.102783	NM_177292	ENSMUSG00000063430	Wscd2	4933413A10Rik|C530024P05Rik|Gm450	WSC domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-16912443-4	chr13	16912336	16912536	+	970.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138654, intron 13 of 13)	intron (NM_138654, intron 13 of 13)	782329.0	NM_138654	192136.0	Mm.364180	NM_138654	ENSMUSG00000055137	Sugct	5033411D12Rik|D17907	succinyl-CoA glutarate-CoA transferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5479926-2	chr19	5479826	5480026	+	927.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021474, intron 7 of 10)	intron (NM_021474, intron 7 of 10)	5191.0	NM_001164352	58859.0	Mm.276367	NM_021474	ENSMUSG00000024909	Efemp2	0610011K11Rik|Fbln4|MBP1	epidermal growth factor-containing fibulin-like extracellular matrix protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-65369557-2	chr14	65369457	65369657	+	737.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_199029, intron 1 of 9)	intron (NM_199029, intron 1 of 9)	10881.0	NM_199029	380912.0	Mm.270087	NM_199029	ENSMUSG00000034522	Zfp395	BC053701|Gm910	zinc finger protein 395	protein-coding	2.48870636526618	1.08877787450589	1.82809163281335	1.46927615088868	2.51074516459556	1.09428198907535	1.8434990529643	1.47675371241355	0.0401524541718565	0.97259699287723	0.998431161219273
Merged-chr17-5742348-2	chr17	5742248	5742448	+	718.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 8 of 8)	intron (NM_146073, intron 8 of 8)	-56309.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-104490819-4	chr9	104490716	104490916	+	981.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	64703.0	NR_035516	100316725.0		NR_035516	ENSMUSG00000089406	Mir2136	mmu-mir-2136	microRNA 2136	ncRNA	2.87999929555059	3.77506527738878	3.12595528817239	3.55805571951757	2.90444161887445	3.15598759871797	1.94434602627566	3.05336396915137	-0.906565006181679	0.16912385641637	0.635963653139451
Merged-chr7-135758968-4	chr7	135758851	135759051	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42572.0	NM_001081117	17345.0	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153347484-2	chr2	153347384	153347584	+	835.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039939, intron 1 of 11)	intron (NM_001039939, intron 1 of 11)	1345.0	NM_001039939	228790.0	Mm.330677	NM_001039939	ENSMUSG00000042548	Asxl1	mKIAA0978	additional sex combs like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141976301-3	chr4	141976206	141976406	+	848.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177868, intron 5 of 31)	intron (NM_177868, intron 5 of 31)	-6686.0	NR_040672	545691.0	Mm.332015	NR_040672	ENSMUSG00000085424	Fhad1os1	Gm13037	forkhead-associated (FHA) phosphopeptide binding domain 1, opposite strand 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-39650307-4	chr1	39650212	39650412	+	814.645813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_170597, intron 1 of 3)	intron (NM_170597, intron 1 of 3)	870.0	NM_170597	263764.0	Mm.122091	NM_170597	ENSMUSG00000050967	Creg2	A830098L22Rik	cellular repressor of E1A-stimulated genes 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46896842-4	chr8	46896740	46896940	+	986.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15-int|LTR|ERVL	-90047.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-18821815-4	chr2	18821686	18821886	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19968.0	NR_131254	66774.0	Mm.87075	NR_131254	ENSMUSG00000097638	Carlr	4933439G12Rik|Carl	cardiac and apoptosis-related long non-coding RNA	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-15374878-1	chr17	15374778	15374978	+	668.0	f1_balb.idr	exon (NM_007865, exon 2 of 11)	exon (NM_007865, exon 2 of 11)	945.0	NM_007865	13388.0	Mm.4875	NM_007865	ENSMUSG00000014773	Dll1	Delta1	delta like canonical Notch ligand 1	protein-coding	-0.866897965599699	-0.855186182529608	-0.860814216145537	-0.863104444405205	-0.866334338823548	-0.852451443006597	-0.527533834030131	-0.324771262672406	3.06011004613897	0.307511019989185	1
Merged-chr3-55101338-4	chr3	55101224	55101424	+	982.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13D1|LTR|ERVK	-10784.0	NM_001144988	229285.0	Mm.235523	NM_144895	ENSMUSG00000036580	Spg20	AI840044|C79168|SPARTIN|Spart|TAHCCP1|mKIAA0610	spastic paraplegia 20, spartin (Troyer syndrome) homolog (human)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71137210-4	chr17	71137148	71137348	+	954.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46284.0	NM_001357791	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-125484765-2	chr7	125484642	125484842	+	689.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360659, intron 2 of 7)	B1_Mus2|SINE|Alu	6800.0	NM_001360659	67711.0	Mm.4467	NM_026330	ENSMUSG00000030750	Nsmce1	2510027N19Rik	NSE1 homolog, SMC5-SMC6 complex component	protein-coding	3.31804081084993	4.44744971109287	2.19374340727339	4.32494945448593	3.00054913252678	4.0490675111379	1.66849968891576	4.07785581768024	-0.476455552874363	0.680483059141423	0.995506882643648
Merged-chr5-139407869-2	chr5	139407769	139407969	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177000, intron 1 of 1)	intron (NM_177000, intron 1 of 1)	1482.0	NM_177000	319772.0	Mm.440271	NM_177000	ENSMUSG00000044092	C130050O18Rik	-	RIKEN cDNA C130050O18 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-101680399-3	chr13	101680330	101680530	+	817.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001077495)	TTS (NM_001077495)	12200.0	NM_001024955	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167753456-2	chr2	167753356	167753556	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	62279.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-77203063-4	chr1	77202949	77203149	+	805.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	293719.0	NR_105770	102465180.0		NR_105770	ENSMUSG00000099141	Mir6352	Gm27481|mmu-mir-6352	microRNA 6352	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-75478685-4	chr1	75478579	75478779	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177056)	promoter-TSS (NM_177056)	792.0	NM_001001566	74241.0	Mm.260577	NM_001001565	ENSMUSG00000032997	Chpf	1700028N03Rik|AI414328|D1Bwg1363e	chondroitin polymerizing factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-43381464-4	chr16	43381360	43381560	+	865.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181058, intron 2 of 6)	intron (NM_181058, intron 2 of 6)	38736.0	NR_046026	626693.0	Mm.447083	NR_046026	ENSMUSG00000085499	Gm15713	-	predicted gene 15713	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70588761-4	chr11	70588679	70588879	+	646.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016713, intron 1 of 30)	intron (NM_016713, intron 1 of 30)	25898.0	NM_016713	50932.0	Mm.42967	NM_016713	ENSMUSG00000020827	Mink1	B55|MINK|Map4k6|Ysk2	misshapen-like kinase 1 (zebrafish)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-134106055-4	chr5	134105967	134106167	+	994.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030719, intron 1 of 8)	ORR1E|LTR|ERVL-MaLR	6319.0	NM_030719	80909.0	Mm.45218	NM_030719	ENSMUSG00000015944	Gatsl2	7530428J21Rik|AW742413|Castor2|Gats|Gatsl1	GATS protein-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-10963472-2	chr16	10963372	10963572	+	578.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019980, intron 2 of 3)	intron (NM_019980, intron 2 of 3)	29649.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-60743385-4	chr9	60743299	60743499	+	998.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	30278.0	NM_026235	67557.0	Mm.44546	NM_026235	ENSMUSG00000034839	Larp6	5430431G03Rik|AI552438|Achn	La ribonucleoprotein domain family, member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-86847549-1	chr14	86847449	86847649	+	796.75	f0_balb.idr	intron (NM_019670, intron 22 of 27)	MLT1B|LTR|ERVL-MaLR	293675.0	NM_019670	56419.0	Mm.440585	NM_019670	ENSMUSG00000022021	Diaph3	4930417P13Rik|Dia2|Diap3|Drf3|p134MDia2	diaphanous related formin 3	protein-coding	2.11605571363121	1.47423895106131	3.01729699684764	2.92953408033429	1.79437350245971	3.46627535582859	3.59768177415608	2.40204137976763	0.872641026004836	0.309844749473821	0.810623049321175
Merged-chr2-121143481-1	chr2	121143381	121143581	+	627.0	f0_c57.idr	intron (NM_001290812, intron 3 of 8)	intron (NM_001290812, intron 3 of 8)	1388.0	NM_029475	75894.0	Mm.384805	NM_029475	ENSMUSG00000027259	Adal	4930578F03Rik	adenosine deaminase-like	protein-coding	1.45970638079637	2.065332424795	1.7303515960764	2.38496131162737	1.61357596933643	1.8025823402153	1.15367346102743	2.15068474592409	-0.63646773465358	0.549354007942644	0.958850792269644
Merged-chr1-173491281-3	chr1	173491180	173491380	+	632.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44677.0	NM_001024721	545384.0	Mm.371698	NM_001024721	ENSMUSG00000070501	Ifi214	Pyhin-B|p214	interferon activated gene 214	protein-coding	0.671865862912143	0.815185627170316	1.17875508407524	0.604375010892474	0.268703426018855	0.292978930964672	0.285137087414501	0.278402520121298	-4.3492156551659	0.0180487635838562	1
Merged-chr1-191349802-2	chr1	191349702	191349902	+	759.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_025864, exon 8 of 8)	exon (NM_025864, exon 8 of 8)	23837.0	NM_025864	66950.0	Mm.236300	NM_025864	ENSMUSG00000026627	Tmem206	2310028N02Rik|AI118576	transmembrane protein 206	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-21564150-4	chr5	21564071	21564271	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028977, intron 2 of 3)	intron (NM_028977, intron 2 of 3)	20644.0	NM_028977	74511.0	Mm.439963	NM_028977	ENSMUSG00000039883	Lrrc17	37kDa|4833425M04Rik|6130400C22Rik|P37nb	leucine rich repeat containing 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-110176475-4	chr5	110176400	110176600	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008146)	promoter-TSS (NM_008146)	4.0	NR_040431	100504007.0	Mm.441495	NR_040430	ENSMUSG00000086247	Gm15787	-	predicted gene 15787	ncRNA	5.71988780987958	4.89465900139352	3.88001438723985	5.07425933743874	5.05957473797278	5.25272660191273	4.63284532833441	4.68539849810716	-0.144389298718396	0.716397110598652	0.998431161219273
Merged-chr18-24467858-4	chr18	24467762	24467962	+	979.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-3009.0	NM_026529	68046.0	Mm.276574	NM_026529	ENSMUSG00000024273	2700062C07Rik	AI195775|C87515	RIKEN cDNA 2700062C07 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-79862240-2	chr17	79862140	79862340	+	788.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357752, intron 4 of 13)	intron (NM_001357752, intron 4 of 13)	33883.0	NM_178050	56298.0	Mm.175403	NM_019717	ENSMUSG00000059811	Atl2	2010110I21Rik|AA407293|AV334690|Aip-2|Arl6ip2	atlastin GTPase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-131417433-2	chr2	131417333	131417533	+	701.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64541.0	NM_178607	51902.0	Mm.477523	NM_178607	ENSMUSG00000048911	Rnf24	2810473M14Rik|4930505A13Rik|AI317164|C86507|D2Ertd504e	ring finger protein 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-4529847-2	chr8	4529747	4529947	+	691.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36442.0	NM_026058	67260.0	Mm.35511	NM_026058	ENSMUSG00000008206	Cers4	2900019C14Rik|Lass4|Trh1	ceramide synthase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-107114319-2	chr8	107114219	107114419	+	597.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17774.0	NR_104410	21750.0	Mm.6402	NM_009353	ENSMUSG00000031921	Terf2	TRF2	telomeric repeat binding factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-33251472-2	chr14	33251372	33251572	+	810.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153800, intron 2 of 10)	intron (NM_153800, intron 2 of 10)	34649.0	NM_153800	239027.0	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-36554796-3	chr19	36554713	36554913	+	937.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172637, exon 1 of 21)	exon (NM_172637, exon 1 of 21)	174.0	NM_172637	226098.0	Mm.61107	NM_172637	ENSMUSG00000041180	Hectd2	4921524L07|A630025O09Rik|AW212605	HECT domain E3 ubiquitin protein ligase 2	protein-coding	1.60952517854489	1.83820100051068	0.89563062761484	1.10604506056869	1.8209005797045	2.34760588493058	0.900233253818353	1.11128334022755	0.796788606311199	0.533656633149722	0.952266905421651
Merged-chr18-60713299-2	chr18	60713199	60713399	+	938.5	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001348101, exon 2 of 15)	5' UTR (NM_001348101, exon 2 of 15)	14267.0	NM_001348103	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-16123297-1	chr19	16123197	16123397	+	723.0	f0_c57.idr	Intergenic	Lx8|LINE|L1	-9534.0	NM_008139	14682.0	Mm.439701	NM_008139	ENSMUSG00000024639	Gnaq	1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI	guanine nucleotide binding protein, alpha q polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71701122-2	chr8	71701023	71701223	+	908.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028189, intron 1 of 2)	intron (NM_028189, intron 1 of 2)	677.0	NM_028189	72297.0	Mm.290837	NM_028189	ENSMUSG00000031803	B3gnt3	2210008L19Rik	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3	protein-coding	1.8574900225203	2.39234237798474	1.05529679756424	1.60088201141326	1.65864846407152	2.1206579333708	1.66146891772583	1.0406821325089	-0.411686758094792	0.724000376216693	0.998431161219273
Merged-chr11-97436855-2	chr11	97436806	97437006	+	873.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur3|SINE|Alu	-13254.0	NM_021493	58996.0	Mm.394118	NM_021493	ENSMUSG00000049807	Arhgap23	A330041B18Rik	Rho GTPase activating protein 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-48645566-1	chr9	48645466	48645666	+	556.0	f1_balb.idr	Intergenic	Intergenic	-40443.0	NM_001311062	18113.0	Mm.8362	NM_010924	ENSMUSG00000032271	Nnmt	-	nicotinamide N-methyltransferase	protein-coding	2.10239659858836	1.91183991341787	1.58634931158958	1.00649079784357	1.974898078884	1.6550756176495	1.02600647836398	1.39887569263764	-0.475196810778862	0.694702234878959	0.997836418558882
Merged-chr12-79744308-4	chr12	79744233	79744433	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 8 of 10)	intron (NM_009014, intron 8 of 10)	180400.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139822145-2	chr5	139822045	139822245	+	617.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4749.0	NM_001356963	66506.0	Mm.29070	NM_025604	ENSMUSG00000029551	Psmg3	1810042K04Rik|4930403H09Rik|AI303239	proteasome (prosome, macropain) assembly chaperone 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-35880347-2	chr13	35880247	35880447	+	674.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	26000.0	NM_145938	208366.0	Mm.35545	NM_145938	ENSMUSG00000021418	Rpp40	D8Bwg1265e|Rnasep1	ribonuclease P 40 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-86526228-4	chr6	86526134	86526334	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011865)	promoter-TSS (NM_011865)	-45.0	NM_011865	23983.0	Mm.274146	NM_011865	ENSMUSG00000051695	Pcbp1	WBP17|[a]CP-1|alphaCP-1|hnRNP E1|hnRNP-E1	poly(rC) binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-86671234-4	chr11	86671134	86671334	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356531)	promoter-TSS (NM_001356531)	41.0	NM_001356531	75909.0	Mm.390398	NM_029478	ENSMUSG00000018171	Vmp1	3110098I04Rik|4930579A11Rik|AI787464|Tango5|Tmem49|mir-21a|ni-2	vacuole membrane protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-38804970-2	chr9	38804870	38805070	+	859.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16-int|LTR|ERVK	-10438.0	NM_146781	258777.0	Mm.223208	NM_146781	ENSMUSG00000043911	Olfr922	MOR161-3	olfactory receptor 922	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-82942222-3	chr15	82942112	82942312	+	999.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17084.0	NR_037241	100526477.0		NR_037241	ENSMUSG00000092751	Mir3080	mmu-mir-3080	microRNA 3080	ncRNA	0.753115089550635	0.322061911764774	1.39857740599674	1.33675046363306	0.290633188834788	0.324466082930531	0.313672267005132	0.304301616554805	-4.62968005445144	0.0126897083875272	0.128880745965196
Merged-chr5-134179982-4	chr5	134179860	134180060	+	931.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-3193.0	NM_033572	94254.0	Mm.29508	NM_033572	ENSMUSG00000061979	Rcc1l	5730496C04Rik|AU019812|Wbscr16	reculator of chromosome condensation 1 like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-108569873-4	chr9	108569775	108569975	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026378)	promoter-TSS (NM_026378)	-17.0	NM_026378	67789.0	Mm.458081	NM_026378	ENSMUSG00000019039	Dalrd3	6330580J24Rik|C77829|mir-425	DALR anticodon binding domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-78145854-2	chr10	78145754	78145954	+	569.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23914.0	NM_138601	28295.0	Mm.268691	NM_138601	ENSMUSG00000053329	D10Jhu81e	C21orf33|ES1	DNA segment, Chr 10, Johns Hopkins University 81 expressed	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-42210847-2	chr10	42210747	42210947	+	897.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019740, intron 2 of 3)	ORR1C2|LTR|ERVL-MaLR	65895.0	NM_019740	56484.0	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-80385379-2	chr11	80385280	80385480	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045038, intron 1 of 16)	B1_Mus1|SINE|Alu	2101.0	NM_001130171	22680.0	Mm.401332	NM_011751	ENSMUSG00000017421	Zfp207	8430401D15Rik|BuGZ|Zep|Znf207	zinc finger protein 207	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-102234063-4	chr15	102233965	102234165	+	881.7333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011244)	TTS (NM_011244)	-2130.0	NM_013566	16421.0	Mm.58	NM_013566	ENSMUSG00000001281	Itgb7	Ly69	integrin beta 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-157078614-4	chr2	157078513	157078713	+	818.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001164663, exon 1 of 15)	exon (NM_001164663, exon 1 of 15)	652.0	NM_001164663	320706.0	Mm.79466	NM_001164663	ENSMUSG00000055485	Soga1	9830001H06Rik|AI426038|D430036N24Rik|Soga	suppressor of glucose, autophagy associated 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-148393945-2	chr2	148393845	148394045	+	730.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1432.0	NM_009219	20608.0	Mm.35324	NM_009219	ENSMUSG00000037014	Sstr4	Smstr4|sst4	somatostatin receptor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45015585-2	chr7	45015485	45015685	+	991.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001008422, intron 1 of 10)	intron (NM_001008422, intron 1 of 10)	664.0	NM_001008422	233208.0	Mm.28298	NM_001008422	ENSMUSG00000038406	Scaf1	AI480556|SR-A1	SR-related CTD-associated factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115642119-2	chr11	115642019	115642219	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13824.0	NM_001252395	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-12224501-2	chr12	12224410	12224610	+	900.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-37629.0	NM_029758	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	1.72774112531049	1.2843604462788	0.877123030024728	1.46438440009932	1.49656489057326	1.29352636008598	0.880083765101567	1.47242817080838	-0.271321366505258	0.836815319205688	0.998431161219273
Merged-chr3-65586462-4	chr3	65586342	65586542	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57028.0	NR_027955	71004.0	Mm.475465	NM_001033527	ENSMUSG00000074580	4931440P22Rik	-	RIKEN cDNA 4931440P22 gene	ncRNA	1.95391140384509	2.67070540874909	2.89811096785573	2.71837543173663	3.3923881001942	1.48635325306675	3.44447428856646	1.8907185227	0.44320624570322	0.610695240559026	0.975183586809945
Merged-chr14-30039780-2	chr14	30039680	30039880	+	704.25	f1_balb.idr|f1_c57bl6.idr	TTS (NM_028981)	TTS (NM_028981)	17147.0	NM_175343	218865.0	Mm.259916	NM_172264	ENSMUSG00000015970	Chdh	AU041472|D630034H06Rik	choline dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-43407691-3	chr17	43407581	43407781	+	881.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357332, intron 2 of 20)	intron (NM_001357332, intron 2 of 20)	18215.0	NM_001081178	224792.0	Mm.23478	NM_001081178	ENSMUSG00000056492	Adgrf5	8430401C09Rik|9330185D23|AI528491|Gpr116|mKIAA0758	adhesion G protein-coupled receptor F5	protein-coding	-0.776777079575578	-0.763820002747867	-0.76803283027006	-0.771304379054401	-0.60771607870347	0.15596626512538	-0.767101006295594	-0.770731500132408	3.48076419457237	0.209957824408988	1
Merged-chr5-143425145-2	chr5	143425045	143425245	+	578.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2B|LTR|ERVL	21325.0	NM_025841	66913.0	Mm.181880	NM_025841	ENSMUSG00000079111	Kdelr2	1110007A14Rik	KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-120576806-2	chr9	120576706	120576906	+	558.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_073359)	promoter-TSS (NR_073359)	-525.0	NR_073359	76100.0	Mm.48212	NR_073359	ENSMUSG00000052658	5830454E08Rik	-	RIKEN cDNA 5830454E08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-76602236-2	chr2	76602136	76602336	+	613.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR34B_MM|LTR|ERVK	45758.0	NM_011871	23992.0	Mm.277250	NM_011871	ENSMUSG00000002731	Prkra	AV120107|PRK|Pact|RAX|lear	protein kinase, interferon inducible double stranded RNA dependent activator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-96709863-4	chr15	96709761	96709961	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-10133.0	NM_175121	67760.0	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150625582-4	chr4	150625482	150625682	+	975.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26592.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21467620-2	chr9	21467520	21467720	+	546.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001253893, exon 4 of 21)	exon (NM_001253893, exon 4 of 21)	28944.0	NR_029585	387194.0		NR_029585	ENSMUSG00000065547	Mir199a-1	Mirn199|Mirn199a-1|mir-199a-1	microRNA 199a-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-136795017-4	chr3	136794885	136795085	+	938.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008913, intron 1 of 13)	intron (NM_008913, intron 1 of 13)	124919.0	NM_001293622	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64919025-3	chr5	64918911	64919111	+	626.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13688.0	NM_030682	21897.0	Mm.273024	NM_030682	ENSMUSG00000044827	Tlr1	-	toll-like receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31669998-4	chr14	31669908	31670108	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28951.0	NM_025295	26363.0	Mm.282679	NM_025295	ENSMUSG00000021900	Btd	-	biotinidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-50907291-3	chr2	50907183	50907383	+	801.966675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2401.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-19217993-2	chr3	19217893	19218093	+	717.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356295, intron 6 of 7)	intron (NM_001356295, intron 6 of 7)	29698.0	NM_001356295	67472.0	Mm.45125	NM_026182	ENSMUSG00000027601	Mtfr1	1300002C08Rik|1700080D04Rik|2810026O10Rik|4930579E05Rik|Chppr|Fam54a2	mitochondrial fission regulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91414567-2	chr16	91414467	91414667	+	615.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008349, intron 3 of 6)	intron (NM_008349, intron 3 of 6)	8332.0	NM_008349	16155.0	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-144319596-4	chr1	144319520	144319720	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70516.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85366605-4	chr12	85366501	85366701	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026775, intron 1 of 4)	intron (NM_026775, intron 1 of 4)	8116.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126692420-3	chr8	126692349	126692549	+	966.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-99013.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-71275938-4	chr2	71275798	71275998	+	925.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172436, intron 17 of 17)	intron (NM_172436, intron 17 of 17)	63952.0	NM_010064	13427.0	Mm.249479	NM_010064	ENSMUSG00000027012	Dync1i2	3110079H08Rik|AW554389|Dncic2	dynein cytoplasmic 1 intermediate chain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-79664162-3	chr10	79664064	79664264	+	875.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013591)	promoter-TSS (NM_013591)	-395.0	NM_013591	17123.0	Mm.391556	NM_013591	ENSMUSG00000020310	Madcam1	AV211525|MAdCAM-1	mucosal vascular addressin cell adhesion molecule 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-132384455-4	chr1	132384348	132384548	+	948.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178874, intron 1 of 4)	intron (NM_178874, intron 1 of 4)	5870.0	NM_001311107	68875.0	Mm.273785	NM_178874	ENSMUSG00000042066	Tmcc2	1110063G11Rik	transmembrane and coiled-coil domains 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-135206870-1	chr3	135206770	135206970	+	638.0	f0_balb.idr	Intergenic	Intergenic	-5693.0	NM_173762	229841.0	Mm.161470	NM_173762	ENSMUSG00000045328	Cenpe	312kDa|AU019344|BC049989|C530022J18|CENP-E|Kif10	centromere protein E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-109074153-4	chr9	109074056	109074256	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172774)	promoter-TSS (NM_172774)	-32.0	NM_172774	235610.0	Mm.100622	NM_172774	ENSMUSG00000025646	Atrip	6620401K05Rik	ATR interacting protein	protein-coding	4.32603811736319	4.75979652375168	4.26050079158461	2.89367067539292	5.05508743064241	4.64926642528201	4.16998336868502	4.0444977301167	0.432856181702623	0.367506754334388	0.862548129597808
Merged-chr1-174038698-4	chr1	174038618	174038818	+	987.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-3215.0	NM_146717	258712.0	Mm.223146	NM_146717	ENSMUSG00000045381	Olfr433	MOR123-1	olfactory receptor 433	protein-coding	4.17438373260454	4.2658788455804	2.01162809691205	3.67397242841394	4.00120715184837	2.36442062296645	3.58240025191522	3.69263746349417	-0.337573818672312	0.609661307304326	0.974992433107985
Merged-chr5-3420627-4	chr5	3420529	3420729	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 3 of 7)	intron (NM_009873, intron 3 of 7)	76736.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135959990-2	chr4	135959890	135960090	+	797.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_008254, exon 7 of 9)	exon (NM_008254, exon 7 of 9)	-3735.0	NM_001356493	74246.0	Mm.247946	NM_178389	ENSMUSG00000028671	Gale	2310002A12Rik|AI323962	galactose-4-epimerase, UDP	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-83647784-4	chr7	83647679	83647879	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360088, intron 16 of 18)	intron (NM_001360088, intron 16 of 18)	7716.0	NM_001360089	16170.0	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32983492-2	chr2	32983392	32983592	+	855.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	-1409.0	NR_151460	56017.0	Mm.305754	NM_019488	ENSMUSG00000026791	Slc2a8	D2Ertd44e|GLUT8|GlutX1	solute carrier family 2, (facilitated glucose transporter), member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124019450-4	chr5	124019344	124019544	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177876, intron 1 of 3)	intron (NM_177876, intron 1 of 3)	12816.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-57339028-2	chr17	57338928	57339128	+	873.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-19658.0	NM_001355723	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111449479-4	chr12	111449393	111449593	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009396, intron 7 of 11)	intron (NM_009396, intron 7 of 11)	6832.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-84703538-1	chr3	84703438	84703638	+	573.0	f0_balb.idr	3' UTR (NM_177260, exon 7 of 7)	3' UTR (NM_177260, exon 7 of 7)	37346.0	NM_177260	320782.0	Mm.107370	NM_177260	ENSMUSG00000056498	Tmem154	9930117H01Rik	transmembrane protein 154	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70543239-3	chr8	70543117	70543317	+	774.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007924, intron 1 of 11)	intron (NM_007924, intron 1 of 11)	3542.0	NM_007924	13716.0	Mm.271973	NM_007924	ENSMUSG00000070002	Ell	Ell1|Men	elongation factor RNA polymerase II	protein-coding	1.43553390777577	0.911503068631065	1.88062241624701	1.25058602875758	1.44815800068712	0.914994867724512	1.89743628216587	1.2567242769858	0.0391973825663421	0.975670708129708	0.998431161219273
Merged-chr15-3266352-2	chr15	3266252	3266452	+	611.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4415.0	NM_001042613	20363.0	Mm.392203	NM_009155	ENSMUSG00000064373	Selenop	AU018766|D15Ucla1|Se-P|Sepp1|selp	selenoprotein P	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-35607893-3	chr8	35607784	35607984	+	708.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081279, intron 1 of 2)	intron (NM_001081279, intron 1 of 2)	-18864.0	NR_040376	100504714.0	Mm.381744	NR_040376	ENSMUSG00000097357	Gm16793	-	predicted gene, 16793	ncRNA	-1.36173557382786	-1.32815474690469	-1.48755935378017	-1.49538385882153	-1.35790290053399	-1.47596967414592	-1.48540299606242	-1.49398327616012	-0.636274386748411	0.844065881334306	1
Merged-chr10-35482185-2	chr10	35482085	35482285	+	563.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR44A|LTR|ERVK	998785.0	NM_010237	14302.0	Mm.332432	NM_010237	ENSMUSG00000019779	Frk	BSK|BSK/IYK|C85044|GTK|RAK	fyn-related kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-143950280-2	chr2	143950180	143950380	+	785.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_024281, intron 20 of 23)	intron (NM_024281, intron 20 of 23)	34949.0	NM_019771	56431.0	Mm.28919	NM_019771	ENSMUSG00000015932	Dstn	2610043P17Rik|ADF|AU042046|Dsn|corn1|sid23p	destrin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-29484621-6	chr19	29484471	29484671	+	987.7222289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	37416.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-50888612-4	chr15	50888504	50888704	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_035444)	TTS (NR_035444)	445.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71569221-4	chr8	71569145	71569345	+	950.5499880000001	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357181)	promoter-TSS (NM_001357181)	-352.0	NM_001357181	26457.0	Mm.38165	NM_011977	ENSMUSG00000031808	Slc27a1	FATP1|Fatp	solute carrier family 27 (fatty acid transporter), member 1	protein-coding	0.727906111847444	0.570042623118359	0.552116494326848	2.19662091587351	1.68979296337693	1.25334559446518	0.556124419993866	0.540363967075258	-0.4461762936469	0.780720572822004	0.998431161219273
Merged-chr2-131186862-4	chr2	131186779	131186979	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023117)	promoter-TSS (NM_023117)	-69.0	NM_023117	12531.0	Mm.38444	NM_023117	ENSMUSG00000027330	Cdc25b	AI604853	cell division cycle 25B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89772791-4	chr3	89772702	89772902	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027315)	promoter-TSS (NM_027315)	598.0	NR_130957	74034.0	Mm.386816	NR_130957	ENSMUSG00000042579	4632404H12Rik	-	RIKEN cDNA 4632404H12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-62152854-4	chr15	62152762	62152962	+	998.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_003368, intron 3 of 8)	intron (NR_003368, intron 3 of 8)	66589.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-32571208-4	chr4	32571101	32571301	+	940.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_026843, intron 1 of 4)	intron (NR_026843, intron 1 of 4)	461.0	NR_026843	414068.0	Mm.389550	NR_026843	ENSMUSG00000086150	Bach2os	-	BTB and CNC homology 2, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-77800707-4	chr15	77800604	77800804	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022410, intron 3 of 40)	intron (NM_022410, intron 3 of 40)	41471.0	NM_022410	17886.0	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-31634261-4	chr18	31634139	31634339	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357554)	promoter-TSS (NM_001357554)	-129.0	NM_001357554	269003.0	Mm.194538	NM_172965	ENSMUSG00000024260	Sap130	2610304F09Rik|6720406D06	Sin3A associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-61001892-4	chr1	61001802	61002002	+	996.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23988.0	NM_017480	54167.0	Mm.42044	NM_017480	ENSMUSG00000026009	Icos	AILIM|CCLP|CRP-1|H4|Ly115	inducible T cell co-stimulator	protein-coding	2.35674550820052	3.40760248481299	3.73941593356028	2.18264367294852	3.20093532696802	1.60382714022491	2.84936203714253	3.36113835553071	-0.301115822535868	0.70408646364281	0.998431161219273
Merged-chr15-6336272-2	chr15	6336172	6336372	+	866.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001008702, intron 1 of 13)	intron (NM_001008702, intron 1 of 13)	36483.0	NM_001008702	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-26345913-6	chr4	26345809	26346009	+	792.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172865, intron 1 of 4)	intron (NM_172865, intron 1 of 4)	743.0	NM_172865	242362.0	Mm.245602	NM_172865	ENSMUSG00000040520	Manea	4932703L02Rik	mannosidase, endo-alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-37203961-4	chr10	37203863	37204063	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65037.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-136310914-4	chr4	136310789	136310989	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028871)	promoter-TSS (NM_028871)	-53.0	NM_001277122	74326.0	Mm.31051	NM_028871	ENSMUSG00000066037	Hnrnpr	2610003J05Rik|2610528B01Rik|Hnrpr	heterogeneous nuclear ribonucleoprotein R	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-87248115-2	chr17	87248020	87248220	+	728.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR11A2|LTR|ERVK	17827.0	NM_176808	193813.0	Mm.30251	NM_139295	ENSMUSG00000024150	Mcfd2	1810021C21Rik|F5f8d|Lman1ip|Sdnsf	multiple coagulation factor deficiency 2	protein-coding	2.75674879879982	3.0948906021812	2.15600866333662	2.82023584785023	3.28861058039919	2.05214943746579	1.48394803437372	3.00214296044237	-0.15042761461022	0.858623562206759	0.998431161219273
Merged-chr9-122310895-4	chr9	122310805	122311005	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F1|LTR|ERVL-MaLR	-16482.0	NM_133979	102566.0	Mm.87676	NM_133979	ENSMUSG00000037949	Ano10	AI604832|Tmem16k	anoctamin 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-94532296-2	chr6	94532209	94532409	+	682.0	f0_c57.idr|f1_balb.idr	intron (NM_026255, intron 3 of 9)	Lx8|LINE|L1	31995.0	NM_026255	67582.0	Mm.280725	NM_026255	ENSMUSG00000045100	Slc25a26	4930433D19Rik|4933433F13Rik|AW557176|D6Bwg0781e|Slc25a6	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 26	protein-coding	1.40708344668509	0.883176177962726	1.65348899760843	1.94928353295646	1.41968569961799	0.886541495112747	0.871439388064466	1.6102686520388	-1.03737764313665	0.448521462497748	0.914989884444793
Merged-chr2-21183019-4	chr2	21182915	21183115	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027728, intron 4 of 4)	intron (NM_027728, intron 4 of 4)	22350.0	NM_027728	71233.0	Mm.27658	NM_027728	ENSMUSG00000026679	Enkur	4933434I06Rik|AU016229	enkurin, TRPC channel interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-127352863-2	chr6	127352763	127352963	+	602.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44896.0	NR_073373	232386.0	Mm.257367	NR_073373	ENSMUSG00000107153	Gm38404	D130058E03	predicted gene, 38404	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-98775513-4	chr10	98775415	98775615	+	885.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-139127.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-18032159-2	chr2	18032059	18032259	+	889.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_028376, intron 1 of 1)	CpG	4910.0	NR_028378	100034739.0	Mm.401643	NR_028378		Gm17762	-	predicted gene, 17762	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-98719911-1	chr7	98719811	98720011	+	583.0	f1_balb.idr	Intergenic	B3A|SINE|B2	16664.0	NM_028410	72981.0	Mm.4428	NM_028410	ENSMUSG00000030753	Thap12	2900052B10Rik|Dap4|Prkrir|Rpkrir	THAP domain containing 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-52424090-4	chr5	52424122	52424322	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001256059, intron 3 of 11)	intron (NM_001256059, intron 3 of 11)	-16937.0	NR_152197	100041805.0	Mm.417070	NR_152197		Gm3519	Gm43683	predicted gene 3519	ncRNA	-1.1373882097986	-1.25072181621019	-1.10358334894958	-1.26891050250677	-1.01052543487044	-1.24855782160973	-1.25844715736982	-1.26744221463098	-0.0304936902749621	0.992362352355808	1
Merged-chr16-92823652-4	chr16	92823525	92823725	+	934.526794	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111022, intron 2 of 6)	intron (NM_001111022, intron 2 of 6)	2449.0	NM_001111021	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-25368540-2	chr14	25368440	25368640	+	689.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-90645.0	NM_001310666	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3891506-4	chr12	3891422	3891622	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153743)	promoter-TSS (NM_153743)	-222.0	NM_153743	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-153877222-4	chr4	153877111	153877311	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	73265.0	NR_040670	407793.0	Mm.260950	NR_040670		BC039966	-	cDNA sequence BC039966	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-60817773-4	chr19	60817675	60817875	+	849.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026437, intron 3 of 8)	intron (NM_026437, intron 3 of 8)	6220.0	NM_001347464	67894.0	Mm.26148	NM_026437	ENSMUSG00000024993	Fam45a	1810055E12Rik	family with sequence similarity 45, member A	protein-coding	3.76437692104309	1.84002261966547	3.3423833934639	4.08509130885511	3.01369805500663	1.53772909067289	1.47375635688575	4.02069687779509	-0.814197650183991	0.603834300369693	0.973589491466885
Merged-chr2-27515849-2	chr2	27515749	27515949	+	752.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_080848, intron 1 of 13)	intron (NM_080848, intron 1 of 13)	702.0	NM_080848	140858.0	Mm.28265	NM_080848	ENSMUSG00000026917	Wdr5	2410008O07Rik|AA408785|AA960360|Big|Big-3	WD repeat domain 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-104124269-4	chr12	104124215	104124415	+	953.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3681.0	NM_173024	271047.0	Mm.120265	NM_173024	ENSMUSG00000066364	Serpina3b	6A1|A030003A19Rik	serine (or cysteine) peptidase inhibitor, clade A, member 3B	protein-coding	1.68212997224789	1.38505373724185	2.40182898240726	2.21644524434456	2.58686115024143	2.61893394679137	2.957376669091	2.09684355144271	1.39967149838261	0.116571787153202	0.534780130868259
Merged-chr6-143170248-2	chr6	143170148	143170348	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029250, intron 1 of 7)	intron (NM_029250, intron 1 of 7)	3018.0	NM_029250	75320.0	Mm.272548	NM_029250	ENSMUSG00000030275	Etnk1	1110061E11Rik|4930555L11Rik|AI195356|AI841245|C80956|D6Ertd3e|EKI1	ethanolamine kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132939634-3	chr4	132939542	132939742	+	813.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17091.0	NM_001163792	230789.0	Mm.11473	NM_145553	ENSMUSG00000028878	Fam76a	-	family with sequence similarity 76, member A	protein-coding	-1.05924887612571	-1.03858042765653	-1.05033395428885	-0.886399107518934	-1.05872377538034	-1.0360333894043	-0.460517020109407	-1.0553455049382	1.85106656526495	0.559987859580616	1
Merged-chr13-96388252-4	chr13	96388180	96388380	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026173)	promoter-TSS (NM_026173)	-14.0	NM_026173	67463.0	Mm.86472	NM_026173	ENSMUSG00000021671	Poc5	1200014M14Rik|AV144706	POC5 centriolar protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-83738767-2	chr13	83738667	83738867	+	696.416626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029545)	promoter-TSS (NR_029545)	-47.0	NR_029545	723967.0		NR_029545	ENSMUSG00000065424	Mir9-2	Mirn9-2|mir-9-2|mmu-mir-9-2	microRNA 9-2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98327548-2	chr11	98327448	98327648	+	775.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_010895, exon 2 of 2)	exon (NM_010895, exon 2 of 2)	2097.0	NM_010895	18013.0	Mm.4814	NM_010895	ENSMUSG00000038255	Neurod2	Ndrf|bHLHa1	neurogenic differentiation 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-16187645-2	chr1	16187545	16187745	+	686.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	81763.0	NM_133832	98711.0	Mm.274376	NM_133832	ENSMUSG00000025921	Rdh10	3110069K09Rik|4921506A21Rik|AI875664|AW549993|D1Ertd762e|m366Asp	retinol dehydrogenase 10 (all-trans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117747746-4	chr10	117747639	117747839	+	957.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1381.0	NM_029875	215436.0	Mm.256753	NM_029875	ENSMUSG00000060181	Slc35e3	9330166G04Rik|AI481200	solute carrier family 35, member E3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10604610-2	chr19	10604510	10604710	+	756.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145496)	promoter-TSS (NM_145496)	-352.0	NM_145496	225913.0	Mm.374868	NM_145496	ENSMUSG00000034371	Tkfc	BC021917|Dak	triokinase, FMN cyclase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-6416176-4	chr4	6416085	6416285	+	990.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010945, intron 21 of 30)	intron (NM_010945, intron 21 of 30)	38086.0	NM_010945	18201.0	Mm.3059	NM_010945	ENSMUSG00000028245	Nsmaf	AA959567|C630007J05|Fan	neutral sphingomyelinase (N-SMase) activation associated factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91354341-3	chr16	91354246	91354446	+	885.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-18437.0	NM_010509	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100472404-2	chr11	100472304	100472504	+	554.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_172565, exon 1 of 2)	exon (NM_172565, exon 1 of 2)	378.0	NR_155072	217194.0	Mm.183320	NM_172565	ENSMUSG00000048732	Klhl11	BC011167	kelch-like 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-83213531-4	chr17	83213394	83213594	+	769.027771	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1789.0	NM_134117	106522.0	Mm.311974	NM_134117	ENSMUSG00000024247	Pkdcc	AI115348|AW548124|Adtk1|ESTM17|MAd1|Sgk493|Vlk|X83346	protein kinase domain containing, cytoplasmic	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-23735256-1	chr17	23735156	23735356	+	543.0	f1_balb.idr	TTS (NM_023824)	TTS (NM_023824)	5074.0	NM_023824	76498.0	Mm.491253	NM_023824	ENSMUSG00000023909	Paqr4	1500004C10Rik	progestin and adipoQ receptor family member IV	protein-coding	-0.73428542253146	-0.724498605925236	-0.727712433322492	-0.308406471629701	-0.733676550276079	-0.723773189141397	-0.727004212961365	-0.195327852850623	0.441262738279742	0.882069886315526	1
Merged-chr7-55706978-3	chr7	55706882	55707082	+	885.144409	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61202.0	NM_001310740	233274.0	Mm.44425	NM_178706	ENSMUSG00000051504	Siglech	6430529G09Rik|Siglec-H	sialic acid binding Ig-like lectin H	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-173528748-4	chr2	173528646	173528846	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_028158)	TTS (NM_028158)	6154.0	NM_028158	72221.0	Mm.46132	NM_028158	ENSMUSG00000027518	1700021F07Rik	-	RIKEN cDNA 1700021F07 gene	protein-coding	2.29942632292469	3.28910377018771	2.73741825598693	1.9524418493621	2.18761667968307	3.23432221733121	2.95886913330355	2.56213218541279	0.237752716525169	0.757599439433363	0.998431161219273
Merged-chr2-3760434-4	chr2	3760315	3760515	+	977.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025626, intron 1 of 3)	intron (NM_025626, intron 1 of 3)	46957.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-44002742-4	chr10	44002659	44002859	+	870.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172393, intron 1 of 19)	intron (NM_172393, intron 1 of 19)	2087.0	NM_172393	11630.0	Mm.292082	NM_172393	ENSMUSG00000019866	Crybg1	AI462491|AI463325|Aim1	crystallin beta-gamma domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167842535-4	chr2	167842420	167842620	+	826.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-89807.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-108220687-2	chr11	108220587	108220787	+	616.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011101, intron 2 of 16)	intron (NM_011101, intron 2 of 16)	123201.0	NM_011101	18750.0	Mm.222178	NM_011101	ENSMUSG00000050965	Prkca	AI875142|Pkca	protein kinase C, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166182058-2	chr2	166181958	166182158	+	554.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26375.0	NM_028072	72043.0	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-69974416-4	chr8	69974301	69974501	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113346)	promoter-TSS (NM_001113346)	-18.0	NM_001113346	234366.0	Mm.270044	NM_145596	ENSMUSG00000036180	Gatad2a	1110066C11Rik|BC031407|C80248	GATA zinc finger domain containing 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-71208875-4	chr6	71208791	71208991	+	981.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9012.0	NM_017399	14080.0	Mm.22126	NM_017399	ENSMUSG00000054422	Fabp1	Fabpl|L-FABP	fatty acid binding protein 1, liver	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152787032-6	chr1	152786913	152787113	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28|LTR|ERVL	-13140.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-14506642-3	chr1	14506539	14506739	+	897.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-196440.0	NM_010164	14048.0	Mm.250185	NM_010164	ENSMUSG00000025932	Eya1	bor	EYA transcriptional coactivator and phosphatase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-38323499-2	chr18	38323399	38323599	+	686.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MCb|LINE|L1	15494.0	NM_011937	26384.0	Mm.22374	NM_011937	ENSMUSG00000052102	Gnpda1	GNPDA|Gnp1|Gnpi|oscillin	glucosamine-6-phosphate deaminase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-95576368-2	chr9	95576268	95576468	+	789.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16551.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-6104679-4	chr18	6104574	6104774	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039692, intron 3 of 18)	L1MDa|LINE|L1	31424.0	NM_029277	75415.0	Mm.239675	NM_029277	ENSMUSG00000041225	Arhgap12	2810011M08Rik	Rho GTPase activating protein 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-34825908-2	chr19	34825808	34826008	+	551.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114339, intron 3 of 6)	MER20|DNA|hAT-Charlie	-5135.0	NR_029783	723826.0		NR_029783	ENSMUSG00000065594	Mir107	Mirn107|mir-107|mmu-mir-107	microRNA 107	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-121249426-2	chr5	121249326	121249526	+	612.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_181421, intron 1 of 75)	intron (NM_181421, intron 1 of 75)	29207.0	NM_181421	269700.0	Mm.184589	NM_181421	ENSMUSG00000042744	Hectd4	A130010L24|AU042671|BC019639|EG545802|Gm15800|mKIAA0614	HECT domain E3 ubiquitin protein ligase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-8888750-2	chr13	8888650	8888850	+	925.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_145360, intron 4 of 4)	B3|SINE|B2	3144.0	NM_145360	319554.0	Mm.29847	NM_145360	ENSMUSG00000058258	Idi1	4832416K17Rik|IPPI1	isopentenyl-diphosphate delta isomerase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-35346215-4	chr2	35346125	35346325	+	891.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9216.0	NM_013515	13830.0	Mm.295284	NM_013515	ENSMUSG00000026880	Stom	Epb7.2	stomatin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27428921-2	chr2	27428821	27429021	+	667.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1313.0	NM_009500	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-34430779-3	chr4	34430649	34430849	+	940.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-119866.0	NM_001007589	433693.0	Mm.389532	NM_026019	ENSMUSG00000028291	Akirin2	2700059D21Rik|AA114675|AA522011|AU019887|Akirin-2	akirin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-66358811-2	chr9	66358711	66358911	+	689.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145617, intron 1 of 77)	PB1D7|SINE|Alu	8361.0	NM_145617	235439.0	Mm.244179	NM_145617	ENSMUSG00000038664	Herc1	2810449H11Rik|B230218H07|D130015N03Rik|tbl	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-114747668-4	chr5	114747584	114747784	+	851.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077359, intron 13 of 18)	intron (NM_001077359, intron 13 of 18)	25807.0	NM_019834	26431.0	Mm.195632	NM_019834	ENSMUSG00000041890	Git2	1500036H07Rik|5830420E16Rik|6430510B20Rik|9630056M03Rik|B230104M05Rik|CAT2|mKIAA0148	G protein-coupled receptor kinase-interactor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-131056414-3	chr2	131056347	131056547	+	736.43335	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033615, intron 5 of 20)	intron (NM_033615, intron 5 of 20)	7367.0	NR_136922	110751.0	Mm.108550	NM_033615	ENSMUSG00000027318	Adam33	Adaml	a disintegrin and metallopeptidase domain 33	protein-coding	2.87675136536692	3.14285354741839	3.93686604647135	3.41020099965816	2.23165047777321	2.1414281917145	3.15224510309273	1.76556044781253	-1.71546543371668	0.0185918256249183	0.170665997986347
Merged-chr11-69399514-2	chr11	69399414	69399614	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001017426, exon 23 of 23)	3' UTR (NM_001017426, exon 23 of 23)	-1280.0	NM_025915	67020.0	Mm.390406	NM_025915	ENSMUSG00000045377	Tmem88	2600017H02Rik	transmembrane protein 88	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-149524694-2	chr5	149524594	149524794	+	742.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045423, intron 1 of 4)	intron (NR_045423, intron 1 of 4)	-3985.0	NM_029440	381693.0	Mm.136919	NM_029440	ENSMUSG00000029658	Wdr95	4930434E21Rik	WD40 repeat domain 95	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-116031346-3	chr5	116031237	116031437	+	605.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6909.0	NM_031869	19079.0	Mm.458152	NM_031869	ENSMUSG00000029513	Prkab1	1300015D22Rik|AU021155|E430008F22	protein kinase, AMP-activated, beta 1 non-catalytic subunit	protein-coding	0.697014484137766	1.39505024562858	0.736491826292023	0.721978672098873	1.35371655600276	2.18504084177257	0.984648155908985	1.76807983954901	2.83487611510191	0.0491960337512768	0.322896068352199
Merged-chr2-69721315-2	chr2	69721215	69721415	+	991.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1773.0	NM_001081086	228005.0	Mm.11815	NM_001081086	ENSMUSG00000042133	Ppig	AU019516|AU022200|B230312B02Rik|CYP|SRCyp	peptidyl-prolyl isomerase G (cyclophilin G)	protein-coding	-1.32440223303897	-1.29339468673833	-0.717877708899544	-1.31276353204239	-1.32392690786997	-1.29109028300231	-1.30162128075409	-1.31119997543009	-2.49510383040271	0.470258445164311	1
Merged-chr8-71741943-1	chr8	71741843	71742043	+	629.0	f0_balb.idr	Intergenic	Intergenic	-16262.0	NM_028715	74015.0	Mm.22025	NM_028715	ENSMUSG00000070000	Fcho1	3322402E17Rik|N28152	FCH domain only 1	protein-coding	0.835554303591219	0.928238282516059	2.92145814271061	1.13886273259843	2.03978163892833	0.93452946222516	2.14135638654564	1.69654896040734	-0.129161157773791	0.92100042496509	0.998431161219273
Merged-chr8-123048505-2	chr8	123048462	123048662	+	841.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5987.0	NR_045268	100503178.0	Mm.294938	NR_045268	ENSMUSG00000099881	2810013P06Rik	-	RIKEN cDNA 2810013P06 gene	ncRNA	1.52569952054594	1.17095646438742	0.630528400604066	0.95472865555899	0.773026438157886	1.18155450412987	0.632820682603061	0.960059831538522	-1.01121076278636	0.496296077981509	0.936771217641569
Merged-chr19-41323530-2	chr19	41323430	41323630	+	769.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 7 of 16)	intron (NM_031376, intron 7 of 16)	-59526.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-79402257-2	chr15	79402157	79402357	+	656.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_172608, intron 1 of 8)	intron (NM_172608, intron 1 of 8)	662.0	NM_001253817	223693.0	Mm.323358	NM_172608	ENSMUSG00000009035	Tmem184b	2610507A11|4732495E13Rik	transmembrane protein 184b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72000226-2	chr6	72000126	72000326	+	633.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42302.0	NR_046180	330350.0	Mm.246787	NR_046180	ENSMUSG00000108356	9130221F21Rik	9130221F21	RIKEN cDNA 9130221F21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85108828-4	chr12	85108735	85108935	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1998.0	NM_030225	78920.0	Mm.296221	NM_030225	ENSMUSG00000004789	Dlst	1600017E01Rik|4632413C10Rik|4930529O08Rik|DLTS	dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-82826326-4	chr18	82826218	82826418	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29579.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-88998127-2	chr11	88998027	88998227	+	999.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	-1276.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	1.51366065345526	0.971864787398271	1.57879067806416	1.07655837035078	0.72559980693932	0.761801639006596	1.11684548227719	1.33506098206635	-1.31155302295863	0.35327656820645	0.853132398390271
Merged-chr4-152136225-2	chr4	152136125	152136325	+	838.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207691)	promoter-TSS (NM_207691)	100.0	NM_207689	56226.0	Mm.264215	NM_019585	ENSMUSG00000028943	Espn	je	espin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-29950600-4	chr5	29950514	29950714	+	985.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA9|LINE|L1	-62500.0	NM_001314054	16193.0	Mm.1019	NM_031168	ENSMUSG00000025746	Il6	Il-6	interleukin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-136425976-2	chr3	136425876	136426076	+	733.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23373.0	NR_040592	70055.0	Mm.261063	NR_040592	ENSMUSG00000099508	1700030L20Rik	-	RIKEN cDNA 1700030L20 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-145230168-1	chr5	145230068	145230268	+	545.0	f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-1547.0	NM_001083958	72611.0	Mm.206555	NM_028298	ENSMUSG00000007812	Zfp655	2700038I16Rik|9030409O18Rik|mKIAA4222	zinc finger protein 655	protein-coding	-1.8418762459921	-1.8125357239735	-1.82140854000656	-1.82869693527674	-1.56059678980999	-1.8106129477253	-1.81939992894326	-1.82739231600805	1.3620893379502	0.699511506488145	1
Merged-chr11-50198387-2	chr11	50198287	50198487	+	601.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026543, intron 6 of 6)	intron (NM_026543, intron 6 of 6)	12433.0	NM_001290769	18412.0	Mm.40828	NM_011018	ENSMUSG00000015837	Sqstm1	A170|OSF-6|Osi|STAP|STONE14|p62	sequestosome 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-181282393-4	chr2	181282293	181282493	+	920.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198169, intron 1 of 9)	intron (NM_198169, intron 1 of 9)	5573.0	NM_198169	229004.0	Mm.220423	NM_198169	ENSMUSG00000038705	Gmeb2	AI839884	glucocorticoid modulatory element binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-13474437-4	chr10	13474345	13474545	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001195065)	promoter-TSS (NM_001195065)	-49.0	NM_001195065	215789.0	Mm.283359	NM_001033257	ENSMUSG00000062866	Phactr2	AV158170|BC012871	phosphatase and actin regulator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-112682059-2	chr12	112681959	112682159	+	558.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001100460, exon 2 of 2)	3' UTR (NM_001100460, exon 2 of 2)	3219.0	NM_001100460	382639.0	Mm.11350	NM_001100460	ENSMUSG00000037638	Zbtb42	EG382639|Gm5188|simiRP58	zinc finger and BTB domain containing 42	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-3323342-4	chr2	3323246	3323446	+	952.68335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008708, intron 11 of 13)	intron (NM_008708, intron 11 of 13)	9282.0	NM_001013376	227522.0	Mm.293948	NM_001013376	ENSMUSG00000049950	Rpp38	C330006A15Rik	ribonuclease P/MRP 38 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-23905135-2	chr18	23905035	23905235	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-49553.0	NM_027007	69256.0	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101343365-1	chr7	101343265	101343465	+	551.0	f0_balb.idr	intron (NM_019990, intron 4 of 6)	intron (NM_019990, intron 4 of 6)	-4704.0	NM_001040111	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	-0.398340942767717	-0.386565821312035	-0.390435129530485	-0.393412722261832	-0.0268825075973116	-0.194052083078708	-0.389582691274433	0.225607145288416	3.55940615940621	0.150340411389277	1
Merged-chr5-97001275-2	chr5	97001133	97001333	+	743.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_080708, intron 1 of 15)	intron (NM_080708, intron 1 of 15)	3544.0	NM_080708	140780.0	Mm.281490	NM_080708	ENSMUSG00000034663	Bmp2k	4933417M22Rik|AA673486|AV128808|BIKE	BMP2 inducible kinase	protein-coding	-2.18292257394068	-2.15545247547656	-2.03304972317742	-2.17058342868585	-2.18099422382073	-2.1536522739386	-2.16187909550322	-2.16936197735154	-0.683654500252594	0.846597994014493	1
Merged-chr11-109615344-1	chr11	109615244	109615444	+	543.0	f1_balb.idr	Intergenic	Intergenic	-3955.0	NM_145940	52639.0	Mm.35817	NM_145940	ENSMUSG00000041895	Wipi1	4930533H01Rik|AW411817|D11Ertd498e	WD repeat domain, phosphoinositide interacting 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-35291847-2	chr2	35291747	35291947	+	941.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001206368, intron 4 of 16)	MTD|LTR|ERVL-MaLR	9467.0	NM_146120	227753.0	Mm.443	NM_146120	ENSMUSG00000026879	Gsn	ADF	gelsolin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-74932684-3	chr15	74932544	74932744	+	748.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR6-int|LTR|ERV1	-22407.0	NM_001164039	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	-1.7024385483431	-1.81249224917775	-1.82134771053534	-1.82862185015837	-1.70038292649591	-1.81057323376012	-1.81934302819017	-1.82731978264371	0.0376840119903864	0.991491645451152	1
Merged-chr5-67427693-7	chr5	67427581	67427781	+	972.1904910000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001164806, exon 1 of 5)	5' UTR (NM_001164806, exon 1 of 5)	118.0	NM_001164806	666938.0	Mm.101339	NM_001164806	ENSMUSG00000092060	Bend4	D330027G24Rik|EG666938	BEN domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-78467756-3	chr11	78467656	78467856	+	879.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026740, intron 2 of 4)	intron (NM_026740, intron 2 of 4)	2055.0	NM_026740	52466.0	Mm.131618	NM_026740	ENSMUSG00000020829	Slc46a1	1110002C08Rik|D11Ertd18e|HCP1|Pcft	solute carrier family 46, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-48977501-2	chr13	48977401	48977601	+	591.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9389.0	NR_015601	68128.0	Mm.426304	NR_015601		Fam120aos	C030044B11Rik	family with sequence similarity 120A, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-136609032-4	chr1	136608933	136609133	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15868.0	NM_177643	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-80453230-4	chr1	80453143	80453343	+	978.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040460, intron 2 of 2)	intron (NR_040460, intron 2 of 2)	7311.0	NR_040460	72208.0	Mm.396181	NR_040460	ENSMUSG00000101483	1700016L21Rik	CD11c-DTR|DCKO|DTR-GFP|DTR-GRP|Jr3|Tg(Itgax-DTR/EGFP)57Lan	RIKEN cDNA 1700016L21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-155483822-4	chr1	155483736	155483936	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	43275.0	NR_132128	433367.0	Mm.359304	NR_132128	ENSMUSG00000073535	Gm5532	EG433367	predicted gene 5532	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-79658040-3	chr15	79657936	79658136	+	965.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029407, intron 1 of 17)	intron (NM_029407, intron 1 of 17)	920.0	NM_029407	75729.0	Mm.78946	NM_029407	ENSMUSG00000042564	Fam227a	4933432B09Rik	family with sequence similarity 227, member A	protein-coding	2.96051374171582	2.29985915944015	2.95868822552539	2.78431821387548	2.98449828706011	1.61174572566152	2.88646192822656	3.13102578047792	0.00665190702874507	0.993111487648625	0.998431161219273
Merged-chr2-174439654-4	chr2	174439544	174439744	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022325)	promoter-TSS (NM_022325)	-605.0	NM_022325	64138.0	Mm.156919	NM_022325	ENSMUSG00000016256	Ctsz	AI787083|AU019819|CTSX|D2Wsu143e	cathepsin Z	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166564744-4	chr2	166564719	166564919	+	820.491638	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_152154, exon 1 of 2)	non-coding (NR_152154, exon 1 of 2)	297.0	NR_152154	433503.0	Mm.491336	NR_152154		Gm29679	-	predicted gene, 29679	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-85076251-1	chr8	85076151	85076351	+	615.0	f1_c57bl6.idr	exon (NM_026399, exon 6 of 9)	exon (NM_026399, exon 6 of 9)	4494.0	NM_001039514	330817.0	Mm.193086	NM_201408	ENSMUSG00000060038	Dhps	Dhs	deoxyhypusine synthase	protein-coding	0.978011858764911	0.609553646821827	0.600285534811874	1.34260291410892	1.2683834741262	0.61163573812316	0.950666397782233	1.04670312774634	0.30086558295048	0.849311598750536	1
Merged-chr11-88012817-2	chr11	88012712	88012912	+	833.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F2|SINE|Alu	-14514.0	NM_001168471	68097.0	Mm.246436	NM_026556	ENSMUSG00000020483	Dynll2	1700064A15Rik|6720463E02Rik|C87222|DLC8|DLC8b|Dlc2	dynein light chain LC8-type 2	protein-coding	2.71205695108156	2.37057729612673	2.65960768748356	2.58547399736361	3.31790350072168	2.03650093208797	2.15339724112259	2.2398199159237	-0.016234139663579	0.983821213501754	0.998431161219273
Merged-chr10-127650257-4	chr10	127650161	127650361	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009284, intron 4 of 21)	MERVL_2A-int|LTR|ERVL	7275.0	NM_009284	20852.0	Mm.121721	NM_009284	ENSMUSG00000002147	Stat6	-	signal transducer and activator of transcription 6	protein-coding	3.00492219729951	1.65499742587063	2.55357908026012	1.95111984740233	3.08401250769024	2.96274037354205	1.61275104687317	1.56424299908299	0.208080134805046	0.824852655320667	0.998431161219273
Merged-chr11-23855547-4	chr11	23855450	23855650	+	989.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39720.0	NM_172555	216578.0	Mm.470599	NM_172555	ENSMUSG00000020273	Papolg	9630006B20Rik	poly(A) polymerase gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-148174258-1	chr4	148174158	148174358	+	551.0	f1_c57bl6.idr	Intergenic	Intergenic	13590.0	NM_176848	230904.0	Mm.262287	NM_176848	ENSMUSG00000041556	Fbxo2	FBG1|FBX2|Fbs1|Fbs2|NFB42|Prpl4	F-box protein 2	protein-coding	0.85247159127414	0.140877986645208	1.67040176813647	0.119784129853435	0.10627363343461	0.407507070225355	0.131721062435432	0.121425191734792	-3.84568789955912	0.0492425309028368	0.323040015805974
Merged-chr12-35418125-4	chr12	35418012	35418212	+	997.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	116877.0	NM_013464	11622.0	Mm.341377	NM_013464	ENSMUSG00000019256	Ahr	Ah|Ahh|Ahre|In|bHLHe76	aryl-hydrocarbon receptor	protein-coding	4.51053609602092	5.03379633406314	4.84876117166497	4.33464110455757	4.50661084027653	4.72773760641155	3.6477706198663	3.52792138988467	-0.640948552412846	0.135455035990566	0.574816685071332
Merged-chr4-154163498-3	chr4	154163385	154163585	+	766.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2801.0	NM_026388	67808.0	Mm.288737	NM_026388	ENSMUSG00000029030	Tprgl	1200015A19Rik|Svap30|Tprg1l|mover	transformation related protein 63 regulated like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-47277915-3	chr13	47277753	47277953	+	902.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	83850.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	-2.18233058068552	-2.15536956715525	-2.16352280018114	-2.04193253143548	-2.18043796738662	-2.15360272754651	-2.16167708693786	-2.16902129354933	-0.683654500252594	0.846597994014493	1
Merged-chr6-51170573-2	chr6	51170473	51170673	+	998.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	99337.0	NR_029719	387166.0		NR_029719	ENSMUSG00000065505	Mir148a	Mirn148|Mirn148a|mir-148a	microRNA 148a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69948421-7	chr11	69948318	69948518	+	944.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009204)	promoter-TSS (NM_009204)	-221.0	NM_001359114	20528.0	Mm.10661	NM_009204	ENSMUSG00000018566	Slc2a4	GT2|Glut-4|Glut4|twgy	solute carrier family 2 (facilitated glucose transporter), member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-159334410-3	chr1	159334319	159334519	+	667.333313	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	intron (NM_011931, intron 18 of 19)	RMER1B|Other|Other	-5888.0	NR_028518	100217414.0	Mm.450690	NR_028518	ENSMUSG00000089536	Scarna3a	MBI-114	small Cajal body-specific RNA 3A	ncRNA	2.77448916591419	3.098027433472	2.72425077191001	2.65019379612014	2.43833753146601	2.45683970858171	2.37862120356628	2.55719991200951	-0.753725050545431	0.291453030856629	0.796128548904676
Merged-chr16-21474837-3	chr16	21474743	21474943	+	941.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081366, intron 15 of 46)	intron (NM_001081366, intron 15 of 46)	51725.0	NM_001285894	209018.0	Mm.235683	NM_145948	ENSMUSG00000033653	Vps8	AI315068|AU040738|mKIAA0804	VPS8 CORVET complex subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-127542166-3	chr6	127542074	127542274	+	875.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35801.0	NM_001033464	381812.0	Mm.296093	NM_001033464	ENSMUSG00000061414	Cracr2a	Efcab4b|Gm1073|Gm462	calcium release activated channel regulator 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-111509521-2	chr10	111509421	111509621	+	759.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_009344)	TTS (NM_009344)	3235.0	NM_009344	21664.0	Mm.3117	NM_009344	ENSMUSG00000020205	Phlda1	DT1P1B11|TDAG51|Tdag	pleckstrin homology like domain, family A, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26562026-2	chr17	26561926	26562126	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026170, intron 1 of 9)	intron (NM_026170, intron 1 of 9)	514.0	NM_026170	67458.0	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	-1.23762633386078	-1.21028538162312	-0.761833143473885	-1.22996150105553	-1.2371531430765	-1.03797070507268	-1.21864248520028	-1.22837313963491	-1.35529293745094	0.681906321614025	1
Merged-chr8-69273276-1	chr8	69273176	69273376	+	603.0	f0_balb.idr	intron (NM_172491, intron 1 of 5)	intron (NM_172491, intron 1 of 5)	2196.0	NM_172491	211135.0	Mm.294970	NM_172491	ENSMUSG00000079038	D130040H23Rik	-	RIKEN cDNA D130040H23 gene	protein-coding	1.89452985026548	1.23400889910133	2.0535462706016	1.87692554325699	2.01076964933882	2.36281163335764	1.44918400768123	2.21045722071496	0.687255960019244	0.500999686975904	0.938226730357636
Merged-chr11-20142723-2	chr11	20142617	20142817	+	665.0	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-29766.0	NM_146243	66713.0	Mm.259045	NM_146243	ENSMUSG00000020152	Actr2	4921510D23Rik|AA409782|Arp2|D6Ertd746e	ARP2 actin-related protein 2	protein-coding	2.18757410241975	1.27396436091956	1.23199202607705	1.69663073655023	3.30246382211042	1.83359716077177	2.99227316075568	3.09910173418746	2.749163010197	0.00414162427683756	0.0577804745040663
Merged-chr10-59335078-1	chr10	59334978	59335178	+	545.0	f0_balb.idr	intron (NM_001316370, intron 1 of 13)	intron (NM_001316370, intron 1 of 13)	11782.0	NM_001316370	18451.0	Mm.2212	NM_011030	ENSMUSG00000019916	P4ha1	AL022634|P4ha	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101583883-2	chr11	101583783	101583983	+	604.974976	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359325, intron 2 of 7)	intron (NM_001359325, intron 2 of 7)	1584.0	NM_001359325	217203.0	Mm.280559	NM_144830	ENSMUSG00000034947	Tmem106a	0610008L10Rik|AI043106|BC022145	transmembrane protein 106A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115476457-2	chr11	115476357	115476557	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177778, intron 2 of 2)	intron (NM_177778, intron 2 of 2)	790.0	NM_001361594	276905.0	Mm.38019	NM_177778	ENSMUSG00000057219	Armc7	A630084C13|BC023126	armadillo repeat containing 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-157425911-3	chr2	157425809	157426009	+	939.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025395, intron 1 of 13)	intron (NM_001025395, intron 1 of 13)	1616.0	NM_001025395	20779.0	Mm.22845	NM_009271	ENSMUSG00000027646	Src	AW259666|pp60c-src	Rous sarcoma oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-174052354-4	chr1	174052239	174052439	+	929.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	1964.0	NM_146716	258711.0	Mm.377648	NM_146716	ENSMUSG00000047048	Olfr432	MOR123-2	olfactory receptor 432	protein-coding	2.54418475362528	2.30287767098163	3.25561376747063	2.77642067812998	2.34793361003566	2.62554801289499	2.87636331960207	2.79033840684906	-0.19953450519265	0.782413680944997	0.998431161219273
Merged-chr17-54430091-2	chr17	54429991	54430191	+	798.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60017.0	NR_045825	69418.0	Mm.391004	NR_045825	ENSMUSG00000099747	1700025K24Rik	-	RIKEN cDNA 1700025K24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-128687723-2	chr8	128687623	128687823	+	929.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010578, intron 1 of 15)	intron (NM_010578, intron 1 of 15)	2069.0	NM_010578	16412.0	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-96922845-4	chr5	96922693	96922893	+	804.016663	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131152, intron 2 of 2)	GA-rich|Low_complexity|Low_complexity	1521.0	NR_131152	666266.0	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	3.54837181297597	4.55681289557294	3.77130916284406	4.16189084962835	3.8319389015742	4.00451247937784	3.22581093851161	4.23202391575246	-0.256361365295135	0.599028084296026	0.972303230574462
Merged-chr2-90553852-1	chr2	90553752	90553952	+	753.0	f1_balb.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	26795.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.381742611892964	0.622781770122799	0.129401913662266	0.124896337399323	0.498048111719445	0.7535778142409	0.130689766738176	0.125683524241512	0.516185858326291	0.79836420818442	1
Merged-chr3-37312071-2	chr3	37311971	37312171	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001255992)	promoter-TSS (NM_001255992)	375.0	NM_145825	207175.0	Mm.344708	NM_145825	ENSMUSG00000045031	Cetn4	-	centrin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-74429337-2	chr1	74429237	74429437	+	670.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009509, intron 17 of 19)	intron (NM_009509, intron 17 of 19)	19953.0	NM_009509	22349.0	Mm.471601	NM_009509	ENSMUSG00000026175	Vil1	Vil	villin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-30977341-4	chr3	30977250	30977450	+	998.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7935.0	NM_001165956	241915.0	Mm.233173	NM_153421	ENSMUSG00000037652	Phc3	E030046K01Rik|Edr3|Hph3	polyhomeotic 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-117159604-4	chr5	117159483	117159683	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081308, intron 1 of 19)	ID_B1|SINE|B4	25995.0	NM_183306	330177.0	Mm.24343	NM_183306	ENSMUSG00000061288	Taok3	2900006A08Rik|A130052D22|A430105I05Rik	TAO kinase 3	protein-coding	1.26944940782851	0.623020151549258	0.921231396652481	1.11342394695609	0.962687872121905	0.624586211581455	0.928825058667252	0.76459174762068	-1.02871044392166	0.499527951710221	1
Merged-chr3-97965606-4	chr3	97965493	97965693	+	843.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033779, intron 1 of 1)	intron (NM_001033779, intron 1 of 1)	35420.0	NM_001033779	433632.0	Mm.212421	NM_001033779		Gm5544	EG433632	predicted gene 5544	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-13960190-1	chr14	13960090	13960290	+	633.0	f0_balb.idr	intron (NM_001359900, intron 1 of 8)	RSINE1|SINE|B4	1123.0	NM_001285780	66231.0	Mm.295875	NM_025435	ENSMUSG00000053453	Thoc7	Nif3l1bp1	THO complex 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-41059264-1	chr9	41059164	41059364	+	564.0	f0_balb.idr	intron (NM_176860, intron 1 of 13)	intron (NM_176860, intron 1 of 13)	20242.0	NM_001357412	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	-0.0541764128128142	-0.0391018074670865	-0.0440494792567943	0.470449634936005	0.414660657158969	-0.037985273271981	-0.0429590070808064	0.477236718486208	0.912971846032492	0.691526256068826	1
Merged-chr1-4785698-4	chr1	4785597	4785797	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033530)	promoter-TSS (NR_033530)	29.0	NM_001177658	27395.0	Mm.182927	NM_025300	ENSMUSG00000033845	Mrpl15	HSPC145|MRP-L7|Rpml7	mitochondrial ribosomal protein L15	protein-coding	6.87721481175584	7.45152601221193	7.56120277294436	7.05435595879087	6.22091103919596	6.35172072281633	6.31315750563387	6.59907722221337	-0.933729502652044	3.81659411577381e-06	0.000203216699117104
Merged-chr11-87423031-4	chr11	87422918	87423118	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031386, intron 1 of 30)	U1|snRNA|snRNA	-4573.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-97519392-3	chr15	97519308	97519508	+	855.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MD|LINE|L1	186414.0	NM_028003	71919.0	Mm.12255	NM_028003	ENSMUSG00000022466	Rpap3	2310042P20Rik|D15Ertd682e	RNA polymerase II associated protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91191807-2	chr2	91191707	91191907	+	771.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001177730, exon 4 of 10)	exon (NM_001177730, exon 4 of 10)	3228.0	NM_013839	22259.0	Mm.22690	NM_013839	ENSMUSG00000002108	Nr1h3	AU018371|LXR|RLD1|Unr1	nuclear receptor subfamily 1, group H, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-57368260-2	chr17	57368160	57368360	+	610.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355722, intron 2 of 22)	Lx5b|LINE|L1	9574.0	NM_010130	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-65906614-3	chr17	65906520	65906720	+	655.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20865.0	NM_009067	19765.0	Mm.17009	NM_009067	ENSMUSG00000024096	Ralbp1	RLIP76|Rip1	ralA binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-38221108-2	chr16	38221008	38221208	+	590.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347232, intron 10 of 11)	ORR1C2|LTR|ERVL-MaLR	73716.0	NM_010936	18171.0	Mm.8509	NM_010936	ENSMUSG00000022809	Nr1i2	PXR|PXR.1|PXR.2|PXR1|SXR|mPXR	nuclear receptor subfamily 1, group I, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-94298629-4	chr13	94298504	94298704	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER77B|LTR|ERVL	-12773.0	NM_001346609	107767.0	Mm.201455	NM_029153	ENSMUSG00000021687	Scamp1	4930505M11Rik|AI415563|AW122395	secretory carrier membrane protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80060529-2	chr10	80060429	80060629	+	651.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359635, intron 23 of 31)	intron (NM_001359635, intron 23 of 31)	6510.0	NM_001037741	625249.0	Mm.332810	NM_008162	ENSMUSG00000075706	Gpx4	GPx-4|GSHPx-4|PHGPx|mtPHGPx|snGPx	glutathione peroxidase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-56668210-4	chr14	56668124	56668324	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023773)	promoter-TSS (NM_023773)	-24.0	NR_153396	75339.0	Mm.152466	NM_023773	ENSMUSG00000079184	Mphosph8	1500035L22Rik|4930548G07Rik|AU040635	M-phase phosphoprotein 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-3645105-4	chr7	3644997	3645197	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146176)	promoter-TSS (NM_146176)	-172.0	NM_146176	232791.0	Mm.358731	NM_146176	ENSMUSG00000035632	Cnot3	A930039N10Rik	CCR4-NOT transcription complex, subunit 3	protein-coding	7.63258705567915	7.69224070964526	7.63331425890423	7.79713140060134	7.3488448893316	7.819753729253	7.97688133877899	7.48568536688371	-0.0165134528395738	0.916907311072179	0.998431161219273
Merged-chr3-84050429-1	chr3	84050329	84050529	+	553.0	f0_balb.idr	Intergenic	Intergenic	-10268.0	NM_172681	229473.0	Mm.28838	NM_172681	ENSMUSG00000033767	Tmem131l	D930015E06Rik|Kiaa0922|mKIAA0922	transmembrane 131 like	protein-coding	-1.84303373260285	-1.81303463126392	-1.82210660711932	-1.82955859819738	-1.84092785115721	-1.81106869625141	-1.8200529106377	-1.54273750312762	1.50114612804783	0.670102668014672	1
Merged-chr15-63506091-1	chr15	63505991	63506191	+	1000.0	f0_balb.idr	Intergenic	Intergenic	-26483.0	NR_045279	432958.0	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-51099886-3	chr17	51099786	51099986	+	786.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028162, intron 2 of 21)	intron (NM_028162, intron 2 of 21)	59492.0	NM_001285993	72238.0	Mm.120650	NM_028162	ENSMUSG00000023923	Tbc1d5	1600014N05Rik	TBC1 domain family, member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69838984-2	chr11	69838884	69839084	+	988.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_026982, intron 2 of 3)	intron (NM_026982, intron 2 of 3)	459.0	NM_026982	69186.0	Mm.248772	NM_026982	ENSMUSG00000070394	Tmem256	1810027O10Rik|3110009M16Rik	transmembrane protein 256	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-8535649-4	chr10	8535560	8535760	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16835.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-160068972-4	chr2	160068874	160069074	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52321.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	1.7351691032843	1.00876801819219	2.67043723212168	1.40229051446743	1.63112774947491	1.28877511531359	0.989108622935433	2.33136049302282	-0.523271048547503	0.6646975266336	0.992236411328325
Merged-chr10-80708403-2	chr10	80708303	80708503	+	562.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007460, intron 30 of 30)	intron (NM_007460, intron 30 of 30)	5710.0	NM_027829	71564.0	Mm.35802	NM_027829	ENSMUSG00000055862	Izumo4	9030607L17Rik|AI550407	IZUMO family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-76525305-4	chr5	76525206	76525406	+	916.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28|LTR|ERVL	-4001.0	NM_001359372	69940.0	Mm.403233	NM_027270	ENSMUSG00000036435	Exoc1	2810407P21Rik|A730011E05Rik|SEC3|Sec3l1|Sec3p	exocyst complex component 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-34230893-3	chr5	34230793	34230993	+	589.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001015039, intron 6 of 12)	intron (NM_001015039, intron 6 of 12)	-43183.0	NM_010753	17122.0	Mm.259260	NM_010753	ENSMUSG00000037235	Mxd4	2810410A03Rik|Mad4|bHLHc12	Max dimerization protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-71349445-4	chr10	71349305	71349505	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027184, intron 1 of 5)	intron (NM_027184, intron 1 of 5)	1642.0	NM_027184	69718.0	Mm.245867	NM_027184	ENSMUSG00000060733	Ipmk	2410017C19Rik|AA408208|Impk	inositol polyphosphate multikinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76303167-2	chr15	76303067	76303267	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153122, intron 12 of 26)	intron (NM_153122, intron 12 of 26)	4078.0	NM_153122	75475.0	Mm.322738	NM_153122	ENSMUSG00000022562	Oplah	1700010G02Rik	5-oxoprolinase (ATP-hydrolysing)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165055190-4	chr2	165055091	165055291	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_170704)	promoter-TSS (NM_170704)	-445.0	NM_170704	21939.0	Mm.271833	NM_011611	ENSMUSG00000017652	Cd40	AI326936|Bp50|GP39|HIGM1|IGM|IMD3|T-BAM|TRAP|Tnfrsf5|p50	CD40 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-17888856-1	chr15	17888756	17888956	+	546.0	f1_balb.idr	Intergenic	L1Md_F2|LINE|L1	480771.0	NR_045711	70886.0	Mm.399021	NR_045711	ENSMUSG00000098150	4921515E04Rik	-	RIKEN cDNA 4921515E04 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-126017865-4	chr4	126017764	126017964	+	994.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6795.0	NR_045561	12986.0	Mm.271701	NM_007782	ENSMUSG00000028859	Csf3r	Cd114|Csfgr|G-CSF-R|G-CSFR	colony stimulating factor 3 receptor (granulocyte)	protein-coding	0.721372348837011	1.87449516519437	1.88699801939649	0.743738701085811	1.08340854097826	0.77703636984738	1.18285716314956	1.54537496234954	-0.921710420758096	0.520991645543157	0.947836760490745
Merged-chr4-156183986-3	chr4	156183904	156184104	+	812.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021604, intron 3 of 35)	intron (NM_021604, intron 3 of 35)	13484.0	NM_021604	11603.0	Mm.273098	NM_021604	ENSMUSG00000041936	Agrn	Agrin|nmf380	agrin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-34995485-4	chr6	34995379	34995579	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR52|LTR|ERVL	-17480.0	NM_001025573	243753.0	Mm.440221	NM_001025573	ENSMUSG00000029847	Slc23a4	2010107G12Rik|Gm468	solute carrier family 23 member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-94979128-4	chr11	94979038	94979238	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2811.0	NM_009161	20391.0	Mm.18709	NM_009161	ENSMUSG00000001508	Sgca	50DAG|Asg	sarcoglycan, alpha (dystrophin-associated glycoprotein)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-12769682-4	chr17	12769534	12769734	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010515)	promoter-TSS (NM_010515)	72.0	NM_010515	16004.0	Mm.26553	NM_010515	ENSMUSG00000023830	Igf2r	AI661837|CD222|CI-MPR|M6P/IGF2R|Mpr300	insulin-like growth factor 2 receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-55051575-3	chr1	55051479	55051679	+	882.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-1191.0	NM_026424	67876.0	Mm.281019	NM_026424	ENSMUSG00000025981	Coq10b	1500041J02Rik|1700030I21Rik|9530077A17Rik|AV002237|AW742641	coenzyme Q10B	protein-coding	2.79636373845489	2.35127698027081	3.43205458699014	3.19825145719249	2.90621795160201	1.63572328458484	3.5857916329748	2.8686118771206	-0.143215047837529	0.850623177692819	0.998431161219273
Merged-chr10-121427278-2	chr10	121427178	121427378	+	938.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_138956, intron 1 of 4)	B3A|SINE|B2	48972.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-49458430-4	chr18	49458338	49458538	+	900.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64851.0	NR_033785	67321.0	Mm.245802	NR_033785	ENSMUSG00000100297	1700044K03Rik	-	RIKEN cDNA 1700044K03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-132807145-2	chr7	132807045	132807245	+	719.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_212473, intron 1 of 4)	intron (NM_212473, intron 1 of 4)	6051.0	NM_212473	77938.0	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-90285722-2	chr16	90285622	90285822	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1219.0	NM_178923	224432.0	Mm.439811	NM_178923	ENSMUSG00000022983	Scaf4	AA517739|Sfrs15|Sra4|Srsf15	SR-related CTD-associated factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44602917-2	chr9	44602817	44603017	+	959.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1975.0	NM_001110826	13209.0	Mm.267061	NM_007841	ENSMUSG00000032097	Ddx6	1110001P04Rik|C430015D01Rik|E230023J21Rik|HLR2|mRCK/P54|p54|rck	DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-119106766-4	chr2	119106676	119106876	+	597.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-6041.0	NM_011234	19361.0	Mm.330492	NM_011234	ENSMUSG00000027323	Rad51	AV304093|Rad51a|Reca	RAD51 recombinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-84440735-4	chr10	84440656	84440856	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001004363)	promoter-TSS (NM_001004363)	-285.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-97113678-4	chr5	97113552	97113752	+	863.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16_Mm|LTR|ERVK	-2056.0	NM_001359913	231474.0	Mm.332505	NM_198422	ENSMUSG00000055725	Paqr3	6330415A20Rik|AY424292|RKTG	progestin and adipoQ receptor family member III	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-59135090-2	chr12	59134990	59135190	+	548.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001165253, intron 1 of 22)	RMER6A|LTR|ERVK	3637.0	NM_001165253	338320.0	Mm.213215	NM_146034	ENSMUSG00000021000	Mia2	Ctage5|D12Bwg0579e|Mea6|Mgea|Mgea6	melanoma inhibitory activity 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64932939-3	chr5	64932884	64933084	+	777.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030682)	promoter-TSS (NM_030682)	-285.0	NM_030682	21897.0	Mm.273024	NM_030682	ENSMUSG00000044827	Tlr1	-	toll-like receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-84189267-4	chr12	84189173	84189373	+	930.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163501, intron 1 of 12)	intron (NM_001163501, intron 1 of 12)	4742.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-27592577-3	chr7	27592535	27592735	+	737.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110208, intron 1 of 13)	intron (NM_001110208, intron 1 of 13)	1083.0	NM_001110208	11652.0	Mm.177194	NM_007434	ENSMUSG00000004056	Akt2	2410016A19Rik|AW554154|PKB|PKBbeta	thymoma viral proto-oncogene 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-121703369-4	chr11	121703284	121703484	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144797, intron 1 of 3)	CpG	957.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85980182-4	chr12	85980076	85980276	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347395, intron 29 of 32)	intron (NM_001347395, intron 29 of 32)	98865.0	NM_009368	21809.0	Mm.3992	NM_009368	ENSMUSG00000021253	Tgfb3	TGF-beta-3|Tgfb-3	transforming growth factor, beta 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102452240-2	chr12	102452140	102452340	+	716.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12427.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-70611239-3	chr13	70611150	70611350	+	751.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144837, intron 10 of 18)	intron (NM_144837, intron 10 of 18)	26384.0	NM_144837	218333.0	Mm.139738	NM_144837	ENSMUSG00000034525	Ice1	C77245|mKIAA0947	interactor of little elongation complex ELL subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-127420072-3	chr6	127419978	127420178	+	763.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-26762.0	NM_001346513	101187.0	Mm.110818	NM_181402	ENSMUSG00000037997	Parp11	5330431N24Rik|AI851877|ARTD11|HIN1L|PARP-11	poly (ADP-ribose) polymerase family, member 11	protein-coding	1.29471059661699	0.907653135550874	1.63881872399964	1.4821622412343	1.30510339929689	0.910675018096578	1.65301597797813	1.49023546264871	0.0370703594305849	0.977100184832292	0.998431161219273
Merged-chr5-125329384-4	chr5	125329289	125329489	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205083, intron 1 of 10)	intron (NM_001205083, intron 1 of 10)	11705.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-45733522-2	chr17	45733422	45733622	+	646.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_152153)	promoter-TSS (NR_152153)	322.0	NM_028164	72240.0	Mm.482897	NM_028164	ENSMUSG00000094690	1600014C23Rik	-	RIKEN cDNA 1600014C23 gene	protein-coding	-1.84290330806959	-1.81297841501903	-1.82202794967551	-1.82946150688462	-1.69841214230253	-1.81101734310794	-1.67758883978339	-1.82813090369827	1.43472749533542	0.684151459466795	1
Merged-chr13-5714382-4	chr13	5714279	5714479	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	143713.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-63407543-2	chr4	63407494	63407694	+	797.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4149.0	NM_001045514	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-19017337-2	chr10	19017237	19017437	+	965.1666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1927.0	NM_009397	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-40242137-4	chr4	40242083	40242283	+	883.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-2358.0	NM_172689	230073.0	Mm.86382	NM_172689	ENSMUSG00000040296	Ddx58	6430573D20Rik|C330021E21|RIG-I|RLR-1	DEAD (Asp-Glu-Ala-Asp) box polypeptide 58	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-115519461-1	chr6	115519361	115519561	+	678.0	f0_balb.idr	Intergenic	Intergenic	-25243.0	NM_199033	381802.0	Mm.291208	NM_199033	ENSMUSG00000042389	Tsen2	AU067695	tRNA splicing endonuclease subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100854392-2	chr7	100854292	100854492	+	644.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177073, intron 1 of 10)	intron (NM_177073, intron 1 of 10)	9021.0	NM_001358914	320100.0	Mm.40336	NM_177073	ENSMUSG00000008318	Relt	E430021K24Rik|Tnfrsf19l	RELT tumor necrosis factor receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91934446-2	chr16	91934346	91934546	+	920.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-2816.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-44975447-3	chr2	44975343	44975543	+	621.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47734.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-32681358-2	chr9	32681258	32681458	+	561.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14684.0	NM_011808	23871.0	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180911429-2	chr1	180911329	180911529	+	955.416626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7155.0	NM_133705	69051.0	Mm.274180	NM_133705	ENSMUSG00000026520	Pycr2	1810018M05Rik|P5cr2	pyrroline-5-carboxylate reductase family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-81658713-4	chr13	81658588	81658788	+	668.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030257, intron 1 of 2)	intron (NM_030257, intron 1 of 2)	882.0	NM_030257	80289.0	Mm.259969	NM_030257	ENSMUSG00000035840	Lysmd3	1110030H10Rik|BC003322	LysM, putative peptidoglycan-binding, domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-32608275-4	chr17	32608159	32608359	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13060.0	NM_001100187	677156.0	Mm.484117	NM_001100187	ENSMUSG00000062464	Cyp4f37	Gm9705	cytochrome P450, family 4, subfamily f, polypeptide 37	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-23146769-3	chr19	23146689	23146889	+	875.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010638, intron 1 of 1)	intron (NM_010638, intron 1 of 1)	-2642.0	NR_035423	100316672.0		NR_035423	ENSMUSG00000080626	Mir1192	Mirn1192|mmu-mir-1192	microRNA 1192	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-152788961-4	chr2	152788882	152789082	+	990.033325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009743, intron 2 of 2)	intron (NM_009743, intron 2 of 2)	34809.0	NM_053091	84682.0	Mm.196668	NM_053091	ENSMUSG00000009876	Cox4i2	Cox4b|CoxIV-2	cytochrome c oxidase subunit 4I2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44351458-4	chr7	44351346	44351546	+	984.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034115, intron 23 of 24)	intron (NM_001034115, intron 23 of 24)	23584.0	NM_027049	69349.0	Mm.358922	NM_027049	ENSMUSG00000008028	1700008O03Rik	-	RIKEN cDNA 1700008O03 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-47918183-3	chr19	47918092	47918292	+	802.766663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001738, intron 1 of 1)	intron (NM_001001738, intron 1 of 1)	1107.0	NM_001001738	414801.0	Mm.29457	NM_001001738	ENSMUSG00000044948	Itprip	4833424O12Rik|DANGER	inositol 1,4,5-triphosphate receptor interacting protein	protein-coding	1.68397735276893	0.792777648996877	2.19005865799899	0.758911571163408	1.70113484317881	1.59857727588306	0.778118090001725	0.761559018556403	-0.690537249523815	0.642509163595829	0.982823301118608
Merged-chr14-25400463-2	chr14	25400363	25400563	+	563.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58722.0	NM_001310666	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-37502751-4	chr3	37502658	37502858	+	850.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021343, intron 14 of 15)	intron (NM_021343, intron 14 of 15)	82808.0	NM_021343	57815.0	Mm.172679	NM_021343	ENSMUSG00000027722	Spata5	2510048F20Rik|C78064|Spaf	spermatogenesis associated 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19239611-4	chr7	19239499	19239699	+	943.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207525, intron 1 of 1)	intron (NM_207525, intron 1 of 1)	11210.0	NM_207525	403187.0	Mm.239583	NM_207525	ENSMUSG00000052214	Opa3	D630048P19Rik|Gm1425|Gm472	optic atrophy 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150743320-2	chr4	150743220	150743420	+	868.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-91146.0	NM_173774	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-115924545-3	chr3	115924446	115924646	+	954.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027193, intron 5 of 7)	intron (NM_027193, intron 5 of 7)	36363.0	NM_027193	69740.0	Mm.5915	NM_027193	ENSMUSG00000033554	Dph5	2410012M04Rik|AU045680|C80186	diphthamide biosynthesis 5	protein-coding	1.90675332638714	1.19255100150972	1.16405147758329	1.74359874646434	2.64015796111246	2.03238697358684	2.66659491014038	1.89816865968964	2.15894134665761	0.0387353968137182	0.280531563966393
Merged-chr13-37749263-4	chr13	37749174	37749374	+	825.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-76764.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	2.19491313353052	2.47503265755639	2.53379022538213	3.56911956615633	2.93454243358682	3.20130949480063	1.82174140401337	3.15900061180635	0.115742030665727	0.881402396584094	0.998431161219273
Merged-chr16-3707957-2	chr16	3707857	3708057	+	562.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001161790, exon 9 of 9)	3' UTR (NM_001161790, exon 9 of 9)	10167.0	NM_001161790	54483.0	Mm.143718	NM_019453	ENSMUSG00000022534	Mefv	FMF|TRIM20|pyrin	Mediterranean fever	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-143059007-4	chr5	143058873	143059073	+	714.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359851, intron 12 of 15)	intron (NM_001359851, intron 12 of 15)	54047.0	NM_207110	108086.0	Mm.381440	NM_080561	ENSMUSG00000045078	Rnf216	2810055G22Rik|AI647468|AU019462|C86502|F830018F18Rik|TRIAD3|UIP83|Ubce7ip1	ring finger protein 216	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-120882330-4	chr4	120882229	120882429	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_182929, intron 3 of 7)	intron (NM_182929, intron 3 of 7)	27530.0	NM_182929	242662.0	Mm.192502	NM_182929	ENSMUSG00000032890	Rims3	A730060M23Rik|Nim3|Rim3|mKIAA0237	regulating synaptic membrane exocytosis 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44824478-3	chr7	44824291	44824491	+	787.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001171024, intron 1 of 8)	RLTR20B3|LTR|ERVK	-7733.0	NR_033136	107503.0	Mm.389890	NM_030693	ENSMUSG00000038539	Atf5	AFTA|Atf7|Atfx|ODA-10	activating transcription factor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129105523-2	chr4	129105423	129105623	+	644.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290706)	promoter-TSS (NM_001290706)	-7.0	NM_025452	66260.0	Mm.25295	NM_025452	ENSMUSG00000028786	Tmem54	1810017F10Rik|AI507302	transmembrane protein 54	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-84192192-4	chr15	84192095	84192295	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178614)	promoter-TSS (NM_178614)	-38.0	NM_178614	68653.0	Mm.290725	NM_178614	ENSMUSG00000022437	Samm50	1110030L07Rik	SAMM50 sorting and assembly machinery component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-145673359-2	chr2	145673259	145673459	+	630.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR48|LTR|ERV1	-27836.0	NR_033220	408057.0	Mm.486711	NR_033220	ENSMUSG00000087594	BC039771	-	cDNA sequence BC039771	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71309445-3	chr8	71309277	71309477	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142322, intron 2 of 39)	intron (NM_001142322, intron 2 of 39)	36663.0	NM_001142323	17925.0	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166700565-2	chr2	166700465	166700665	+	657.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	13267.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-139224235-2	chr7	139224105	139224305	+	803.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001143755, intron 6 of 8)	intron (NM_001143755, intron 6 of 8)	-10898.0	NM_001162540	57740.0	Mm.65336	NM_021302	ENSMUSG00000015981	Stk32c	PKE|Pkek|YANK3	serine/threonine kinase 32C	protein-coding	-1.25988825775205	-1.23266949163275	-0.79486201900107	-1.25163205568768	-1.11141665311639	-1.23041342511115	-1.24072352446377	-1.25010129626714	-1.35571397712562	0.687237561566449	1
Merged-chr3-51340521-8	chr3	51340442	51340642	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001291059, exon 1 of 10)	5' UTR (NM_001291059, exon 1 of 10)	102.0	NM_001356358	69257.0	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126424445-3	chr7	126424327	126424527	+	634.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	-4340.0	NM_030566	70314.0	Mm.35467	NM_030566	ENSMUSG00000030727	Rabep2	2610011A08Rik|AI462746|Fra	rabaptin, RAB GTPase binding effector protein 2	protein-coding	1.42922111169373	2.17552989876795	2.29382764029538	1.08438389937881	1.72020466166106	2.19281368783516	1.10952591513525	2.14529757941151	0.0357568424956368	0.975070948096339	0.998431161219273
Merged-chr16-11033740-2	chr16	11033640	11033840	+	923.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur2|SINE|Alu	24842.0	NR_040518	100043147.0	Mm.489001	NR_040518	ENSMUSG00000097056	Gm4262	-	predicted gene 4262	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-132261279-2	chr2	132261179	132261379	+	699.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1869.0	NM_001291040	110911.0	Mm.284503	NM_138651	ENSMUSG00000058793	Cds2	5730450N06Rik|5730460C18Rik|AI854580|D2Wsu127e	CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-52598454-4	chr18	52598337	52598537	+	752.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17478.0	NM_025749	66758.0	Mm.251599	NM_025749	ENSMUSG00000046886	Zfp474	4933409D10Rik|Znf474	zinc finger protein 474	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-31070941-4	chr16	31070761	31070961	+	882.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198626, intron 1 of 3)	intron (NM_198626, intron 1 of 3)	10571.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	0.970731645806345	1.04274085547986	1.02003141761088	2.21702581720263	2.1117019732986	1.98194366582102	2.02376849603979	1.72254406601746	1.46271241889308	0.239117321443405	0.735635286471347
Merged-chr4-128691254-2	chr4	128691154	128691354	+	559.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_018774, intron 1 of 14)	intron (NM_018774, intron 1 of 14)	2516.0	NM_018774	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-46917270-1	chr14	46917170	46917370	+	657.0	f1_balb.idr	intron (NM_001037221, intron 2 of 12)	intron (NM_001037221, intron 2 of 12)	34305.0	NM_001037221	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	-1.11301502176196	-1.08843027643983	-1.10065540268584	-0.337074946373353	-1.11242900008663	-1.08578104058399	-1.09788790207088	-1.10867028474752	-2.94135471364006	0.382729701075202	1
Merged-chr17-29433500-2	chr17	29433400	29433600	+	839.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER46C|DNA|TcMar-Tigger	-57545.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	-2.05752322593321	-2.15521190974092	-2.16307242109104	-2.16952927915413	-2.17938029103484	-2.15350850414045	-2.16129297361887	-2.16837350464794	-0.683654500252594	0.846597994014493	1
Merged-chr19-15815388-3	chr19	15815289	15815489	+	929.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	109233.0	NM_001205339	107272.0	Mm.289936	NM_177420	ENSMUSG00000024640	Psat1	D8Ertd814e|EPIP|PSA|Psat	phosphoserine aminotransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-63555112-3	chr15	63555013	63555213	+	691.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-75505.0	NR_045279	432958.0	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-39173049-4	chr15	39172950	39173150	+	875.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPLTR1_Mm|LTR|ERVK	-25236.0	NM_001256382	116838.0	Mm.309296	NM_053271	ENSMUSG00000037386	Rims2	2810036I15Rik|AW048769|RIM2|Rab3ip2|Rim2(+40A)|Rim2(+44A)|Rim2(+4A)|Serg2|Syt3-rs|mKIAA0751	regulating synaptic membrane exocytosis 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123671196-4	chr5	123671101	123671301	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359224, intron 1 of 18)	intron (NM_001359224, intron 1 of 18)	13160.0	NM_019765	56430.0	Mm.241109	NM_019765	ENSMUSG00000049550	Clip1	1110007I12Rik|4631429H07Rik|AV017631|C81039|CLIP-170|CLIP170|CYLN1|Clip50|Rsn|mKIAA4046|restin	CAP-GLY domain containing linker protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-58323368-4	chr11	58323325	58323525	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028331)	promoter-TSS (NR_028331)	-60.0	NR_028331	319475.0	Mm.72124	NM_178761	ENSMUSG00000049755	Zfp672	4930488P06Rik|4930511N19Rik|Znf672	zinc finger protein 672	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55723970-2	chr19	55723839	55724039	+	759.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20C1_MM|LTR|ERVK	-17871.0	NM_001331147	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.8785087857928	0.618273945415288	1.50761570137283	1.05917899454341	0.886187412429175	0.831692195929647	0.610521371396341	1.18107487666403	-0.795991571852258	0.593914589411476	0.9706660979479
Merged-chr14-108450292-2	chr14	108450192	108450392	+	691.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3A|LINE|L1	463947.0	NM_199065	76965.0	Mm.257268	NM_199065	ENSMUSG00000075478	Slitrk1	3200001I04Rik	SLIT and NTRK-like family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-69157548-4	chr17	69157421	69157621	+	999.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013813, intron 1 of 21)	CpG	777.0	NM_013813	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152870967-3	chr1	152870862	152871062	+	974.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005507, intron 1 of 21)	intron (NM_001005507, intron 1 of 21)	31683.0	NM_001359257	226517.0	Mm.270775	NM_001005507	ENSMUSG00000042772	Smg7	9430023P16Rik|mKIAA0250	Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-143903474-2	chr1	143903374	143903574	+	659.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	100675.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171330288-2	chr1	171330150	171330350	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357553, intron 1 of 4)	intron (NM_001357553, intron 1 of 4)	681.0	NM_001357553	21945.0	Mm.270139	NM_011615	ENSMUSG00000013973	Dedd	CASP8IP1|DEFT|Dedpro1|FLDED1|KE05	death effector domain-containing	protein-coding	1.57022909000929	1.36365005128924	1.81731441356692	0.921516880878366	1.36546759283011	1.67209840860303	1.72860322413947	0.923697003369308	-0.00458563661286446	0.997124625910906	0.999268611847349
Merged-chr12-54984547-2	chr12	54984447	54984647	+	721.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013815, intron 2 of 26)	intron (NM_013815, intron 2 of 26)	1789.0	NM_013815	217578.0	Mm.479583	NM_013815	ENSMUSG00000035021	Baz1a	Acf1|B930060C03|BC065123|Gtl5|Wcrf180|cbp146	bromodomain adjacent to zinc finger domain 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-123928246-4	chr9	123928171	123928371	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40421.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-142723743-2	chr5	142723643	142723843	+	998.1666869999999	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001122730)	TTS (NM_001122730)	21642.0	NM_146257	243328.0	Mm.125942	NM_146257	ENSMUSG00000050822	Slc29a4	ENT4|mPMAT	solute carrier family 29 (nucleoside transporters), member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36987321-4	chr1	36987210	36987410	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M7|LINE|L1	-47783.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133187026-1	chr4	133186926	133187126	+	962.0	f1_c57bl6.idr	intron (NM_153423, intron 4 of 8)	B3A|SINE|B2	-8629.0	NR_105984	102466215.0		NR_105984	ENSMUSG00000099202	Mir7017	Gm27945|mmu-mir-7017	microRNA 7017	ncRNA	0.315163676832496	1.05971553609883	1.47814312259448	0.32879542778436	0.496223512927001	0.349464938289439	0.339148502335009	0.840789385789244	-1.89102510625632	0.297533709628906	1
Merged-chr10-127636823-4	chr10	127636707	127636907	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6179.0	NM_009284	20852.0	Mm.121721	NM_009284	ENSMUSG00000002147	Stat6	-	signal transducer and activator of transcription 6	protein-coding	5.05350050677745	3.88914830553055	4.8631418870717	3.88391203017632	4.62882890727889	4.31802084437761	4.97413599492529	5.40331482582328	0.437776804529847	0.299024899488582	0.800409222377854
Merged-chr7-139388439-2	chr7	139388369	139388569	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_001127363)	promoter-TSS (NM_001127363)	-640.0	NM_183144	212111.0	Mm.28308	NM_183144	ENSMUSG00000025477	Inpp5a	-	inositol polyphosphate-5-phosphatase A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102704803-2	chr12	102704703	102704903	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172584)	promoter-TSS (NM_172584)	66.0	NM_172584	217837.0	Mm.482192	NM_172584	ENSMUSG00000057963	Itpk1	BC031182	inositol 1,3,4-triphosphate 5/6 kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83017301-4	chr6	83017194	83017394	+	980.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033079, intron 7 of 9)	L3|LINE|CR1	16177.0	NM_010070	13448.0	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-90583113-2	chr18	90583013	90583213	+	836.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001362365, intron 1 of 3)	Lx5c|LINE|L1	3288.0	NM_001362365	108168395.0	Mm.391131	NM_001362365	ENSMUSG00000110277	Gm45871	-	predicted gene 45871	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-61728244-4	chr11	61728125	61728325	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7426.0	NM_001033227	109342.0	Mm.441070	NM_001033227	ENSMUSG00000042371	Slc5a10	C330021F16Rik|SGLT5	solute carrier family 5 (sodium/glucose cotransporter), member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-22166073-3	chr17	22165922	22166122	+	756.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177596)	promoter-TSS (NM_177596)	-45.0	NM_177596	210853.0	Mm.441622	NM_177596	ENSMUSG00000063383	Zfp947	6720451E15|EG210853|Gm4769	zinc finger protein 947	protein-coding	0.409275680999946	0.735503689766593	0.182619024041632	0.179082813358162	0.415422373650193	0.745112636469376	0.183635047912751	0.179698566840957	0.0400505638159662	0.984097937013571	1
Merged-chr7-98743089-2	chr7	98742989	98743189	+	630.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39842.0	NM_028410	72981.0	Mm.4428	NM_028410	ENSMUSG00000030753	Thap12	2900052B10Rik|Dap4|Prkrir|Rpkrir	THAP domain containing 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64233874-2	chr5	64233774	64233974	+	932.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 1 of 18)	PB1D9|SINE|Alu	3517.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	-1.7024385483431	-1.81249224917775	-1.82134771053534	-1.82862185015837	-1.70038292649591	-1.81057323376012	-1.81934302819017	-1.82731978264371	0.0376840119903864	0.991491645451152	1
Merged-chr2-75639768-3	chr2	75639666	75639866	+	902.0833130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MMVL30-int|LTR|ERV1	-19493.0	NM_146130	229279.0	Mm.316306	NM_053263	ENSMUSG00000059005	Hnrnpa3	2410013L13Rik|2610209F03Rik|2610510D13Rik|Hnrpa3	heterogeneous nuclear ribonucleoprotein A3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-107994367-2	chr3	107994258	107994458	+	697.75	f0_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	-7938.0	NM_008183	14863.0	Mm.440086	NM_008183	ENSMUSG00000040562	Gstm2	Gstb-2|Gstb2	glutathione S-transferase, mu 2	protein-coding	2.32729280783736	4.09171374227248	3.36742597100145	4.09339764770682	2.62546623133817	2.48766134315776	3.62779315462127	2.89378944906654	-1.02346993668998	0.126618331240291	0.55689342891744
Merged-chr3-127788486-2	chr3	127788384	127788584	+	550.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1388.0	NM_145133	211550.0	Mm.31852	NM_145133	ENSMUSG00000046688	Tifa	T2bp	TRAF-interacting protein with forkhead-associated domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-100633950-2	chr5	100633850	100634050	+	625.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	40306.0	NM_027978	71883.0	Mm.260661	NM_027978	ENSMUSG00000029319	Coq2	2310002F18Rik|PHB:PPT	coenzyme Q2 4-hydroxybenzoate polyprenyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-58408227-2	chr3	58408127	58408327	+	856.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6493.0	NM_001081229	72033.0	Mm.218409	NM_001081229	ENSMUSG00000027806	Tsc22d2	1810043J12Rik|5530402M19Rik	TSC22 domain family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-85193401-2	chr10	85193301	85193501	+	584.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8347.0	NM_007771	12952.0	Mm.26237	NM_007771	ENSMUSG00000020038	Cry1	AU020726|AU021000|Phll1	cryptochrome 1 (photolyase-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-112593390-4	chr12	112593258	112593458	+	890.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198411, intron 1 of 22)	intron (NM_198411, intron 1 of 22)	4574.0	NM_198411	70435.0	Mm.250193	NM_198411	ENSMUSG00000037679	Inf2	2610204M08Rik|AA589465|AW125550|EG629699	inverted formin, FH2 and WH2 domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-142475952-3	chr5	142475849	142476049	+	848.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172725, intron 14 of 16)	CT-rich|Low_complexity|Low_complexity	12018.0	NM_172725	231855.0	Mm.78250	NM_172725	ENSMUSG00000039623	Ap5z1	C330006K01Rik	adaptor-related protein complex 5, zeta 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36596256-4	chr1	36596142	36596342	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001126046, intron 10 of 14)	intron (NM_001126046, intron 10 of 14)	-2910.0	NM_027957	381337.0	Mm.17413	NM_027957	ENSMUSG00000046337	Fam178b	1700024G10Rik|Gm990	family with sequence similarity 178, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-57953979-3	chr4	57953868	57954068	+	798.583313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011660, intron 1 of 4)	intron (NM_011660, intron 1 of 4)	2443.0	NM_011660	22166.0	Mm.260618	NM_011660	ENSMUSG00000028367	Txn1	ADF|AW550880|Trx1|Txn	thioredoxin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-31071954-2	chr6	31071854	31072054	+	583.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8861.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-40784194-4	chr9	40784117	40784317	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_133733)	TTS (NM_133733)	-17056.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-25082733-3	chr5	25082618	25082818	+	684.033325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145401, intron 1 of 15)	intron (NM_145401, intron 1 of 15)	17924.0	NM_145401	108099.0	Mm.33649	NM_145401	ENSMUSG00000028944	Prkag2	2410051C13Rik|AAKG|AAKG2|AI854673|H91620p|WPWS	protein kinase, AMP-activated, gamma 2 non-catalytic subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-87501254-1	chr3	87501154	87501354	+	540.0	f0_balb.idr	TTS (NM_001113238)	TTS (NM_001113238)	-24324.0	NM_001083318	27049.0	Mm.219460	NM_012051	ENSMUSG00000003382	Etv3	AI414410|METS|Pe1	ets variant 3	protein-coding	0.269751397627597	0.292296423616777	0.284948923707622	0.5972122146154	0.672125074522683	0.293947858853179	1.08843492551625	0.841638522122062	2.68577017729714	0.16474735039	1
Merged-chr3-84774455-1	chr3	84774355	84774555	+	622.0	f0_balb.idr	Intergenic	Intergenic	-41122.0	NM_001177773	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-77966421-1	chr9	77966321	77966521	+	909.0	f0_balb.idr	intron (NM_134255, intron 3 of 7)	intron (NM_134255, intron 3 of 7)	49056.0	NM_134255	68801.0	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-75234273-2	chr14	75234173	75234373	+	695.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_030568, intron 2 of 3)	Lx7|LINE|L1	-8014.0	NM_019775	56373.0	Mm.24242	NM_019775	ENSMUSG00000021999	Cpb2	1110032P04Rik|4930405E17Rik|AI255929|CPR|Cpu|TAFI	carboxypeptidase B2 (plasma)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132573006-2	chr4	132572906	132573106	+	616.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081211, intron 1 of 1)	intron (NM_001081211, intron 1 of 1)	8939.0	NM_001081211	19204.0	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85391277-4	chr12	85391179	85391379	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-16562.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-41240096-3	chr8	41239999	41240199	+	1000.0	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	intron (NM_023662, intron 1 of 37)	CpG	340.0	NM_023662	18536.0	Mm.117896	NM_023662	ENSMUSG00000031592	Pcm1	2600002H09Rik|9430077F19Rik|C030044G17Rik	pericentriolar material 1	protein-coding	6.14193509033128	5.87238758642617	5.52883642265214	5.21982537343933	4.58183498887496	5.54754460929088	6.06875063842436	5.0039066311366	-0.374962650786265	0.275227624193835	0.779797158787224
Merged-chr11-43348844-3	chr11	43348783	43348983	+	865.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25578.0	NR_029558	387164.0		NR_029558	ENSMUSG00000065601	Mir146	Mirn146|miR-146a|mmu-mir-146	microRNA 146	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-9665797-4	chr4	9665684	9665884	+	855.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290367, intron 1 of 22)	intron (NM_001290367, intron 1 of 22)	3378.0	NM_023066	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	1.04112821131066	2.72791146638515	1.58097981822159	1.70693392030102	1.04755752590375	2.38465383381636	1.93040895844232	2.40629499236638	0.278619343377598	0.806618258854957	0.998431161219273
Merged-chr9-25585791-3	chr9	25585676	25585876	+	695.805542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 4 of 7)	intron (NM_026189, intron 4 of 7)	104179.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4_GL456216_random-16096-1	chr4_GL456216_random	15996	16196	+	1000.0	f0_c57.idr	5' UTR (NM_001033326, exon 1 of 7)	5' UTR (NM_001033326, exon 1 of 7)	215.0	NM_001033326	236082.0	Mm.305345	NM_001033326	ENSMUSG00000063897	Dhrsx	C80877|D4Ertd296e|Dhrsxy|Pscad	dehydrogenase/reductase (SDR family) X chromosome	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99030782-4	chr15	99030675	99030875	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009448, intron 1 of 3)	intron (NM_009448, intron 1 of 3)	884.0	NM_009448	22146.0	Mm.88212	NM_009448	ENSMUSG00000043091	Tuba1c	M[a]6|Tuba6	tubulin, alpha 1C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-6782791-4	chr17	6782684	6782884	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009510)	promoter-TSS (NM_009510)	-4.0	NM_009510	22350.0	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	3.49600048736891	2.58031905993824	3.9127973769086	2.57448540409919	3.64890066391953	3.43755311986308	4.21450992853996	4.14330827138103	0.926119661009084	0.109375655535454	0.518281641040431
Merged-chr13-37751719-4	chr13	37751608	37751808	+	960.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74330.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-23028775-1	chr8	23028675	23028875	+	1000.0	f0_c57.idr	intron (NM_001110783, intron 1 of 43)	intron (NM_001110783, intron 1 of 43)	-6324.0	NM_001277281	11733.0	Mm.334444	NM_031158	ENSMUSG00000031543	Ank1	Ank-1|nb|pale	ankyrin 1, erythroid	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-57800560-4	chr8	57800458	57800658	+	991.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175032, intron 10 of 11)	intron (NM_175032, intron 10 of 11)	-147503.0	NM_144731	108150.0	Mm.62886	NM_144731	ENSMUSG00000031608	Galnt7	AI225872	polypeptide N-acetylgalactosaminyltransferase 7	protein-coding	5.29879504516854	5.34132174958502	4.60932828623341	4.62466410564127	5.12405232931127	4.45792830421351	4.25030447384965	3.66376400908305	-0.646866169651677	0.113994554498399	0.529161722287253
Merged-chr4-46580921-3	chr4	46580793	46580993	+	885.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164804, intron 1 of 11)	MMTV-int|LTR|ERVK	-14453.0	NM_178893	107684.0	Mm.416311	NM_178893	ENSMUSG00000028337	Coro2a	9030208C03Rik|AI563590|IR10	coronin, actin binding protein 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34063857-2	chr17	34063758	34063958	+	636.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009926, intron 59 of 63)	intron (NM_009926, intron 59 of 63)	24720.0	NM_001317722	12815.0	Mm.20230	NM_009926	ENSMUSG00000024330	Col11a2	-	collagen, type XI, alpha 2	protein-coding	1.43185159832717	1.31788341501918	0.8485864258318	2.22104863913219	1.55627624852719	0.871023442969902	1.82055546088812	0.836603560319257	-0.67731576181954	0.620444694855416	0.978970995380758
Merged-chr13-33076334-3	chr13	33076224	33076424	+	845.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger7|DNA|TcMar-Tigger	-7779.0	NM_173052	282663.0	Mm.314490	NM_173052	ENSMUSG00000051029	Serpinb1b	6330533H24Rik|EIB|Serpin1b1|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 1b	protein-coding	2.09124384711015	2.16209534640429	2.0855380108263	1.51030993438233	2.02516058842514	1.15644805162205	1.99104712777931	1.11408189450223	-0.93296462044436	0.405930453443078	0.89095290927429
Merged-chr7-67422930-2	chr7	67422830	67423030	+	793.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-50072.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78621130-2	chr15	78621026	78621226	+	563.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028195, exon 13 of 13)	3' UTR (NM_028195, exon 13 of 13)	24079.0	NM_028195	72318.0	Mm.32911	NM_028195	ENSMUSG00000018008	Cyth4	2510004M07Rik|5830469K17Rik|AI467541|Pscd4|mFLJ00017	cytohesin 4	protein-coding	-1.33529739681439	-1.30591854857254	-1.3158428643115	-1.1678401991129	-0.950618823128122	-1.30376790795164	-1.31359621676301	-1.3225357656552	1.06732360251078	0.756380064897408	1
Merged-chr1-80783507-2	chr1	80783407	80783607	+	564.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24954.0	NM_175291	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-142781210-2	chr5	142781110	142781310	+	855.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178242, intron 4 of 15)	intron (NM_178242, intron 4 of 15)	36177.0	NM_178242	231861.0	Mm.354649	NM_178242	ENSMUSG00000039477	Tnrc18	BC025631|EG381742|Zfp469	trinucleotide repeat containing 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-128524223-4	chr7	128524081	128524281	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013863, intron 1 of 3)	CpG	598.0	NM_013863	29810.0	Mm.84073	NM_013863	ENSMUSG00000030847	Bag3	AA407278|Bis|mg638	BCL2-associated athanogene 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-35944333-2	chr10	35944233	35944433	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-562474.0	NM_001253355	319415.0	Mm.332442	NM_001081208	ENSMUSG00000044499	Hs3st5	D930005L05Rik|Gm1151|Hs3ost5	heparan sulfate (glucosamine) 3-O-sulfotransferase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-146156390-4	chr3	146156287	146156487	+	997.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005846, intron 1 of 13)	intron (NM_001005846, intron 1 of 13)	6213.0	NM_001005846	68279.0	Mm.116862	NM_026656	ENSMUSG00000011008	Mcoln2	3300002C04Rik|AI549968|C86638|TRPML2	mucolipin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-9129249-3	chr15	9129150	9129350	+	695.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013787, intron 2 of 9)	intron (NM_013787, intron 2 of 9)	11204.0	NM_013787	27401.0	Mm.35584	NM_013787	ENSMUSG00000054115	Skp2	4930500A04Rik|FBXL1|FWD1|p45	S-phase kinase-associated protein 2 (p45)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-50536687-4	chr6	50536595	50536795	+	997.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29779.0	NM_007808	13063.0	Mm.35389	NM_007808	ENSMUSG00000063694	Cycs	-	cytochrome c, somatic	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-113857676-4	chr6	113857613	113857813	+	996.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009723, intron 3 of 21)	intron (NM_009723, intron 3 of 21)	33826.0	NM_001036684	11941.0	Mm.321755	NM_009723	ENSMUSG00000030302	Atp2b2	D6Abb2e|Gena300|PMCA2|Tmy|dfw|jog|wms|wri	ATPase, Ca++ transporting, plasma membrane 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-26966674-4	chr8	26966549	26966749	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10687.0	NM_001101502	353310.0	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-35941125-4	chr13	35941035	35941235	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26771.0	NM_029628	76487.0	Mm.44745	NM_029628	ENSMUSG00000050423	Ppp1r3g	1600032L17Rik	protein phosphatase 1, regulatory (inhibitor) subunit 3G	protein-coding	2.52719627795469	3.92596378201859	4.30423096965204	4.38375493070882	3.96625479800501	4.67003851290775	4.0403136081714	4.26225670822699	0.412307788839238	0.420920959314429	0.900322118218157
Merged-chr11-58643624-1	chr11	58643524	58643724	+	568.0	f1_balb.idr	intron (NM_001039047, intron 2 of 5)	intron (NM_001039047, intron 2 of 5)	3159.0	NM_001039047	216781.0	Mm.339507	NM_001039047	ENSMUSG00000037124	Trim58	Gm16|Gm1783	tripartite motif-containing 58	protein-coding	0.115183668657993	-0.188604945092123	-0.0439445473497443	-0.194205049928456	0.12239430765798	-0.187883175975772	-0.191084689022044	0.167852339779446	0.63104690258247	0.782939134247861	1
Merged-chr5-25436270-4	chr5	25436175	25436375	+	973.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081383, intron 2 of 58)	PB1D9|SINE|Alu	62508.0	NM_001081383	231051.0	Mm.332268	NM_001081383	ENSMUSG00000038056	Kmt2c	E330008K23Rik|HALR|Mll3|mKIAA1506	lysine (K)-specific methyltransferase 2C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-6417871-3	chr10	6417764	6417964	+	946.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVB7_1-LTR_MM|LTR|ERVK	-340729.0	NM_001302794	18390.0	Mm.438000	NM_011013	ENSMUSG00000000766	Oprm1	M-OR-1|MOP-R|MOR-1|MOR-1O|Oprm|mor|muOR	opioid receptor, mu 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-18999110-2	chr7	18999010	18999210	+	775.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145579, intron 2 of 2)	intron (NM_145579, intron 2 of 2)	-4955.0	NM_178757	272359.0	Mm.274237	NM_178757	ENSMUSG00000044030	Irf2bp1	6330414O09Rik|C530033F24	interferon regulatory factor 2 binding protein 1	protein-coding	-1.16360441856637	-1.13941929037077	-0.826984691258645	-1.15941412203612	-1.1631305501134	-0.791586538463853	-1.1479117616535	-1.15780003246231	0.0774311459473923	0.981376295600337	1
Merged-chr15-27929132-2	chr15	27929032	27929232	+	733.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081302, intron 1 of 56)	intron (NM_001081302, intron 1 of 56)	96716.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-9766239-3	chr13	9766141	9766341	+	646.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199141)	promoter-TSS (NM_001199141)	-920.0	NM_144516	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-83883161-4	chr7	83883090	83883290	+	898.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_030705, exon 1 of 1)	exon (NM_030705, exon 1 of 1)	1151.0	NM_030705	80889.0	Mm.272998	NM_030705	ENSMUSG00000070462	Tlnrd1	AW061151|Mesdc1	talin rod domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-53995388-4	chr5	53995259	53995459	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3164.0	NM_001081103	116873.0	Mm.265985	NM_054083	ENSMUSG00000039156	Stim2	-	stromal interaction molecule 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-8501941-7	chr12	8501869	8502069	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1960.0	NM_007483	11852.0	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-9104134-4	chr5	9104040	9104240	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081029, intron 2 of 4)	intron (NM_001081029, intron 2 of 4)	3403.0	NM_001081029	652925.0	Mm.439954	NM_001081029	ENSMUSG00000079659	Tmem243	4930420K17Rik|E030031F02Rik	transmembrane protein 243, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56007720-2	chr17	56007620	56007820	+	621.5	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_145934, exon 1 of 14)	5' UTR (NM_145934, exon 1 of 14)	416.0	NM_145934	106766.0	Mm.204991	NM_145934	ENSMUSG00000038781	Stap2	AW049765|STAP-2	signal transducing adaptor family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-62337958-1	chr10	62337858	62338058	+	547.0	f1_balb.idr	intron (NM_010438, intron 4 of 21)	(TTG)n|Simple_repeat|Simple_repeat	2463.0	NM_001146100	15275.0	Mm.196605	NM_010438	ENSMUSG00000037012	Hk1	BB404130|Hk-1|Hk1-s|dea|mHk1-s	hexokinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120536326-6	chr8	120536269	120536469	+	913.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_151732)	TTS (NR_151732)	512.0	NM_001145897	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-35422083-1	chr9	35421983	35422183	+	551.0	f1_balb.idr	Intergenic	CpG	-29993.0	NM_021339	57810.0	Mm.80509	NM_021339	ENSMUSG00000038119	Cdon	CDO|Cd0|Orcam	cell adhesion molecule-related/down-regulated by oncogenes	protein-coding	-0.952887756482335	-0.937558971599884	-0.947256913508661	-0.949377552214781	-0.683091066466317	-0.934961814606001	-0.946649841686929	-0.414746645915579	2.93336948979223	0.339686616509229	1
Merged-chr1-134801964-4	chr1	134801849	134802049	+	836.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081307, intron 18 of 23)	intron (NM_001081307, intron 18 of 23)	1772.0	NR_015606	329251.0	Mm.188709	NM_001081307	ENSMUSG00000073557	Ppp1r12b	1810037O03Rik|9530009M10Rik|AI132431|Mypt2	protein phosphatase 1, regulatory (inhibitor) subunit 12B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-142816715-5	chr5	142816635	142816835	+	790.580017	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178242, intron 1 of 15)	CpG-11746	652.0	NM_178242	231861.0	Mm.354649	NM_178242	ENSMUSG00000039477	Tnrc18	BC025631|EG381742|Zfp469	trinucleotide repeat containing 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-83271635-4	chr17	83271492	83271692	+	941.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	56309.0	NM_134117	106522.0	Mm.311974	NM_134117	ENSMUSG00000024247	Pkdcc	AI115348|AW548124|Adtk1|ESTM17|MAd1|Sgk493|Vlk|X83346	protein kinase domain containing, cytoplasmic	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-94283340-2	chr6	94283240	94283440	+	686.5	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001286784, exon 1 of 23)	5' UTR (NM_001286784, exon 1 of 23)	577.0	NM_010367	14924.0	Mm.217216	NM_010367	ENSMUSG00000045095	Magi1	AIP3|BAP1|Baiap1|Gukmi1|MAGI1c|Magi-1|TNRC19|WWP3|mKIAA4129	membrane associated guanylate kinase, WW and PDZ domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131981795-4	chr1	131981663	131981863	+	982.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_145977, exon 5 of 5)	3' UTR (NM_145977, exon 5 of 5)	11154.0	NM_145977	212980.0	Mm.200307	NM_145977	ENSMUSG00000026435	Slc45a3	2210413P12Rik|AU023994|AU043764|IPCA-6|PRST|Pcanap6	solute carrier family 45, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46524846-4	chr19	46524758	46524958	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23210.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-96106618-4	chr13	96106518	96106718	+	923.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029210, intron 1 of 12)	MLT1C|LTR|ERVL-MaLR	25959.0	NM_029210	75209.0	Mm.40436	NM_029210	ENSMUSG00000051111	Sv2c	4930527L09Rik|AI841971	synaptic vesicle glycoprotein 2c	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-137724072-4	chr6	137723975	137724175	+	815.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11007.0	NM_011499	20901.0	Mm.22584	NM_011499	ENSMUSG00000030224	Strap	AW557906|C78091|C79202|Unrip	serine/threonine kinase receptor associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-158284754-3	chr2	158284591	158284791	+	909.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_177850)	TTS (NM_177850)	-21802.0	NM_008489	16803.0	Mm.218846	NM_008489	ENSMUSG00000016024	Lbp	Bpifd2|Ly88	lipopolysaccharide binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-95571683-4	chr9	95571566	95571766	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	11849.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-100849573-4	chr12	100849450	100849650	+	815.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145448, intron 7 of 12)	intron (NM_145448, intron 7 of 12)	49974.0	NM_001177674	238377.0	Mm.32160	NM_175493	ENSMUSG00000047415	Gpr68	BB131428|Ogr1	G protein-coupled receptor 68	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-33247842-4	chr14	33247705	33247905	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153800, intron 2 of 10)	intron (NM_153800, intron 2 of 10)	30982.0	NM_153800	239027.0	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-58020613-2	chr13	58020513	58020713	+	619.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001195075, intron 10 of 16)	intron (NM_001195075, intron 10 of 16)	2587.0	NR_030544	100124491.0		NR_030544	ENSMUSG00000077962	Mir874	Mirn874|mir-874|mmu-mir-874	microRNA 874	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150913984-4	chr4	150913867	150914067	+	993.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4046.0	NM_020569	57320.0	Mm.277349	NM_020569	ENSMUSG00000028964	Park7	DJ-1|Dj1	Parkinson disease (autosomal recessive, early onset) 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46610619-2	chr19	46610551	46610751	+	640.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177812, intron 2 of 4)	RLTR18B|LTR|ERVK	11545.0	NM_146099	226178.0	Mm.329895	NM_146099	ENSMUSG00000047731	Wbp1l	D19Wsu162e|Opal1	WW domain binding protein 1 like	protein-coding	3.34142471715805	2.24526800972053	3.61733803849387	3.7208688236658	1.31221349100085	1.79933242209157	2.355869120275	2.88770265014887	-2.02431055256902	0.0132288618410896	0.132759958627484
Merged-chr11-107316989-2	chr11	107316889	107317089	+	910.099976	f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 4 of 9)	intron (NR_153311, intron 4 of 9)	-127608.0	NM_001161329	68979.0	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-86695006-2	chr11	86694906	86695106	+	630.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001356393, exon 33 of 33)	3' UTR (NM_001356393, exon 33 of 33)	10925.0	NM_001098810	217057.0	Mm.24868	NM_175004	ENSMUSG00000072582	Ptrh2	A230072I16Rik|Bit1|CGI-147	peptidyl-tRNA hydrolase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-64111157-2	chr15	64111057	64111257	+	658.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010026, intron 25 of 30)	intron (NM_010026, intron 25 of 30)	-50709.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-107455427-4	chr8	107455328	107455528	+	932.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025830, intron 2 of 23)	intron (NM_025830, intron 2 of 23)	19030.0	NM_025830	66894.0	Mm.390058	NM_025830	ENSMUSG00000031930	Wwp2	1300010O06Rik|AA690238|AIP2|AW554328	WW domain containing E3 ubiquitin protein ligase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-102948650-2	chr11	102948550	102948750	+	828.3000490000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2189.0	NM_011795	23829.0	Mm.57154	NM_011795	ENSMUSG00000045532	C1ql1	C1qrf|CRF|CTRP14|gliacolin	complement component 1, q subcomponent-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-107483598-2	chr11	107483498	107483698	+	548.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025894, intron 1 of 10)	ORR1C2|LTR|ERVL-MaLR	4070.0	NM_025894	66997.0	Mm.491171	NM_025894	ENSMUSG00000020720	Psmd12	1500002F15Rik|AI480719|P55	proteasome (prosome, macropain) 26S subunit, non-ATPase, 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-77777287-2	chr15	77777187	77777387	+	824.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_022410, intron 19 of 40)	intron (NM_022410, intron 19 of 40)	-20277.0	NM_001357895	239552.0	Mm.125650	NM_001081970	ENSMUSG00000056656	Apol8	9830006J20Rik|APOL-II|Apol2	apolipoprotein L 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-7896262-2	chr9	7896162	7896362	+	545.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-23092.0	NM_007464	11796.0	Mm.2026	NM_007464	ENSMUSG00000032000	Birc3	AW107670|Api1|Api2|Birc2|C-IAP2|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF49|cIAP-1|cIAP-2|cIAP1|cIAP2	baculoviral IAP repeat-containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-25576504-2	chr2	25576404	25576604	+	640.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001005424, exon 1 of 1)	3' UTR (NM_001005424, exon 1 of 1)	-1633.0	NM_029293	75454.0	Mm.458079	NM_029293	ENSMUSG00000036504	Phpt1	1700008C22Rik|PHP|Php14	phosphohistidine phosphatase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-17410430-4	chr16	17410313	17410513	+	997.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023348, intron 1 of 4)	intron (NM_023348, intron 1 of 4)	-4099.0	NM_001001983	224020.0	Mm.5718	NM_001001983	ENSMUSG00000041720	Pi4ka	Pik4ca	phosphatidylinositol 4-kinase alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-84820618-2	chr11	84820518	84820718	+	736.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_177564)	TTS (NM_177564)	-1103.0	NM_145433	217038.0	Mm.280825	NM_145433	ENSMUSG00000018405	Mrm1	A530065E19Rik	mitochondrial rRNA methyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-36214240-4	chr2	36214132	36214332	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16194.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-54090494-2	chr11	54090394	54090594	+	864.7999880000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORSL-2a|DNA|hAT-Tip100	-10430.0	NM_001136076	18452.0	Mm.3705	NM_011031	ENSMUSG00000018906	P4ha2	AA407196|C76437|P4hl	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-105895232-6	chr14	105895102	105895302	+	748.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011897, intron 1 of 1)	CpG	1617.0	NM_011897	24064.0	Mm.89982	NM_011897	ENSMUSG00000022114	Spry2	sprouty2	sprouty RTK signaling antagonist 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-134688163-2	chr5	134688063	134688263	+	805.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010717, intron 1 of 15)	intron (NM_010717, intron 1 of 15)	427.0	NM_010717	16885.0	Mm.15409	NM_010717	ENSMUSG00000029674	Limk1	KIZ-1|LIMK-1|Limk	LIM-domain containing, protein kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33742707-2	chr16	33742607	33742807	+	825.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175256, intron 10 of 14)	intron (NM_175256, intron 10 of 14)	-51330.0	NM_010739	17063.0	Mm.3177	NM_010739	ENSMUSG00000022824	Muc13	114/A10|14/A10|AI159736|Lrrp|Ly64|NJ-1	mucin 13, epithelial transmembrane	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-34886656-2	chr18	34886556	34886756	+	726.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4|SINE|ID	25449.0	NM_007913	13653.0	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-46735068-2	chr7	46734968	46735168	+	873.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2465.0	NM_011316	20211.0	Mm.3489	NM_011316	ENSMUSG00000040017	Saa4	Saa-4|Saa-5	serum amyloid A 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-77298699-1	chr7	77298599	77298799	+	545.0	f1_c57bl6.idr	Intergenic	Intergenic	1068812.0	NM_001199224	244071.0	Mm.322829	NM_172902	ENSMUSG00000025754	Agbl1	Ccp4|D430020F16|EG244071|Nna1-l1	ATP/GTP binding protein-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-60202324-3	chr18	60202225	60202425	+	888.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9752.0	NM_001033767	240327.0	Mm.357104	NM_001033767	ENSMUSG00000073555	Gm4951	EG240327|Ifgga2	predicted gene 4951	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-66094942-3	chr17	66094836	66095036	+	573.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028388, intron 1 of 7)	intron (NM_028388, intron 1 of 7)	6623.0	NM_001278415	72900.0	Mm.2206	NM_028388	ENSMUSG00000024099	Ndufv2	2900010C23Rik	NADH dehydrogenase (ubiquinone) flavoprotein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118179403-2	chr11	118179303	118179503	+	695.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001112700, intron 9 of 12)	intron (NM_001112700, intron 9 of 12)	33339.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-184851908-4	chr1	184851758	184851958	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6011.0	NM_133684	67247.0	Mm.177724	NM_133684	ENSMUSG00000073481	Marc2	2810484M10Rik|Mosc2|mARC1	mitochondrial amidoxime reducing component 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-125532628-1	chr8	125532528	125532728	+	594.0	f1_c57bl6.idr	intron (NM_001357372, intron 1 of 21)	intron (NM_001357372, intron 1 of 21)	37235.0	NM_001357372	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	1.38654116795027	0.876668332972879	0.623379277612728	0.612310359866538	1.4016458302698	0.640562775332148	1.90211824079425	0.825313300068196	1.44921795869668	0.343340090847639	0.84406571083625
Merged-chr16-27435102-4	chr16	27434995	27435195	+	963.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025615, intron 5 of 9)	intron (NM_001025615, intron 5 of 9)	46139.0	NM_001289436	67501.0	Mm.258985	NM_026202	ENSMUSG00000038127	Ccdc50	C3orf6	coiled-coil domain containing 50	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-104863855-4	chr3	104863737	104863937	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253702)	promoter-TSS (NM_001253702)	668.0	NM_009797	12340.0	Mm.19142	NM_009797	ENSMUSG00000070372	Capza1	CAPZ|CAZ1|Cappa1|capZ alpha-1	capping protein (actin filament) muscle Z-line, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-40611585-2	chr19	40611485	40611685	+	841.3333130000001	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001304721)	promoter-TSS (NM_001304721)	630.0	NM_026260	67590.0	Mm.60758	NM_026260	ENSMUSG00000025008	Tctn3	4930521E07Rik|AI197391|Tect3	tectonic family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-23237894-1	chr1	23237794	23237994	+	595.0	f0_balb.idr	Intergenic	Intergenic	-34375.0	NR_029533	387225.0		NR_029533	ENSMUSG00000065405	Mir30a	Mirn30a|mir-30a|mmu-mir-30a	microRNA 30a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-138684051-3	chr5	138683945	138684145	+	611.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	61186.0	NM_183025	243308.0	Mm.36612	NM_183025	ENSMUSG00000056014	A430033K04Rik	C86988	RIKEN cDNA A430033K04 gene	protein-coding	1.77466362341992	1.23474137961301	1.19639435937816	1.35369015454412	2.62648331265136	0.9815114325773	1.40507111077366	1.7838123402029	1.32959266351476	0.259704847424501	0.760037811092088
Merged-chr7-30761965-3	chr7	30761863	30762063	+	915.7333369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1793.0	NM_001166173	73712.0	Mm.30138	NM_028618	ENSMUSG00000060962	Dmkn	1110014F24Rik|AW561900|C130074A08|SK30|SK89|cI-36	dermokine	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-18852723-2	chr8	18852623	18852823	+	813.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026792, intron 1 of 7)	RMER1B|Other|Other	6444.0	NM_026792	52123.0	Mm.24117	NM_026792	ENSMUSG00000031467	Agpat5	1110013A05Rik|D8Ertd319e	1-acylglycerol-3-phosphate O-acyltransferase 5 (lysophosphatidic acid acyltransferase, epsilon)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-38186055-4	chr18	38185965	38186165	+	891.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	23697.0	NM_029357	75599.0	Mm.36560	NM_029357	ENSMUSG00000051375	Pcdh1	2010005A06Rik|AI585920	protocadherin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-26212981-2	chr11	26212854	26213054	+	608.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-2378.0	NR_027973	70626.0	Mm.379180	NM_027486		5730522E02Rik	-	RIKEN cDNA 5730522E02 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-71274999-2	chr2	71274899	71275099	+	930.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172436, exon 18 of 18)	3' UTR (NM_172436, exon 18 of 18)	63053.0	NM_010064	13427.0	Mm.249479	NM_010064	ENSMUSG00000027012	Dync1i2	3110079H08Rik|AW554389|Dncic2	dynein cytoplasmic 1 intermediate chain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-25672324-4	chr19	25672211	25672411	+	962.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045347)	promoter-TSS (NR_045347)	-72.0	NR_045347	100503074.0	Mm.140012	NR_045347	ENSMUSG00000101089	2610016A17Rik	2610317C19Rik	RIKEN cDNA 2610016A17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6921972-4	chr19	6921869	6922069	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007953)	promoter-TSS (NM_007953)	-161.0	NM_007953	26379.0	Mm.386776	NM_007953	ENSMUSG00000024955	Esrra	ERRalpha|Err1|Estrra|Nr3b1	estrogen related receptor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-169672973-1	chr2	169672873	169673073	+	542.0	f1_c57bl6.idr	intron (NM_080455, intron 1 of 1)	intron (NM_080455, intron 1 of 1)	39327.0	NM_080455	228911.0	Mm.315789	NM_080455	ENSMUSG00000047907	Tshz2	2900073F20Rik|B830045G17|Mtsh2|Sdccag33l|Tsh2|Zfp218|mKIAA4248|teashirt2	teashirt zinc finger family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-33817742-4	chr17	33817643	33817843	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_030697, exon 3 of 11)	exon (NM_030697, exon 3 of 11)	6819.0	NM_016844	54127.0	Mm.352374	NM_016844	ENSMUSG00000067288	Rps28	-	ribosomal protein S28	protein-coding	5.90486102609681	6.08062326603096	5.05686215740967	5.64768120343281	6.00615477073186	5.36722862810409	6.075527961599	5.52356152884269	0.0645227610667291	0.823863279608124	0.998431161219273
Merged-chr15-58990325-3	chr15	58990233	58990433	+	880.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144800, intron 3 of 14)	intron (NM_144800, intron 3 of 14)	56523.0	NM_023172	66218.0	Mm.322294	NM_023172	ENSMUSG00000022354	Ndufb9	1190008J14Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127646961-2	chr10	127646861	127647061	+	761.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_009284, exon 2 of 22)	exon (NM_009284, exon 2 of 22)	3975.0	NM_009284	20852.0	Mm.121721	NM_009284	ENSMUSG00000002147	Stat6	-	signal transducer and activator of transcription 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-173412121-4	chr1	173412039	173412239	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	-8465.0	NM_001013779	383619.0	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	6.91902217058029	6.70418738612791	6.85762582832696	6.54476460218712	6.29061187564125	6.16968297998948	6.49687068353633	6.28012464949495	-0.483487312670248	0.0131407495466775	0.13218869243884
Merged-chr7-35750953-5	chr7	35750783	35750983	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178704, intron 2 of 18)	intron (NM_178704, intron 2 of 18)	3571.0	NM_178704	233115.0	Mm.257808	NM_178704	ENSMUSG00000043671	Dpy19l3	6030410G08|9330164H19Rik	dpy-19-like 3 (C. elegans)	protein-coding	0.868954173686609	0.439217098390005	0.600143416456742	0.832084019124579	0.878954906630335	0.440692946491569	0.605000180668375	0.837910380908888	0.0365869445450517	0.982154224339421	1
Merged-chr18-77792255-3	chr18	77792154	77792354	+	877.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2296.0	NM_013831	19201.0	Mm.57174	NM_013831	ENSMUSG00000025429	Pstpip2	MAYP|cmo	proline-serine-threonine phosphatase-interacting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-37482783-4	chr13	37482691	37482891	+	768.520813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	137446.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	2.7639038921616	1.43599305724476	2.08104321610318	1.62022554796415	2.62613035463467	2.62723203156828	3.42414661908836	2.93108876420728	1.70418384663047	0.0460756618175226	0.3097585676989
Merged-chr10-128238291-3	chr10	128238171	128238371	+	915.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011589, intron 1 of 28)	intron (NM_011589, intron 1 of 28)	205.0	NM_011589	21853.0	Mm.6458	NM_011589	ENSMUSG00000039994	Timeless	C77407|Debt69|tim	timeless circadian clock 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-99976507-2	chr5	99976407	99976607	+	597.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077266, intron 1 of 7)	intron (NM_001077266, intron 1 of 7)	2431.0	NM_001077266	11991.0	Mm.150231	NM_007516	ENSMUSG00000000568	Hnrnpd	Auf1|Hnrpd	heterogeneous nuclear ribonucleoprotein D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-71159654-4	chr11	71159558	71159758	+	956.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040696, intron 12 of 14)	CT-rich|Low_complexity|Low_complexity	-14954.0	NM_001004142	195046.0	Mm.240227	NM_001004142	ENSMUSG00000069830	Nlrp1a	CARD7|DEFCAP|Gm14|Gm15|NAC|Nalp1|Nalp1a|Nlrp1|PP1044	NLR family, pyrin domain containing 1A	protein-coding	4.23785015458085	3.81538271682221	5.28992705572641	4.25421225584554	3.84783429005892	3.41434958874137	5.02960016857795	4.22073978514304	-0.325894329174246	0.511739773926285	0.94512318675548
Merged-chr3-52390530-2	chr3	52390430	52390630	+	911.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	122193.0	NM_019739	56458.0	Mm.29891	NM_019739	ENSMUSG00000044167	Foxo1	AI876417|Afxh|FKHR|Fkhr1|Foxo1a	forkhead box O1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-109562378-2	chr7	109562278	109562478	+	650.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001326, intron 2 of 19)	intron (NM_001001326, intron 2 of 19)	42246.0	NR_028079	100302499.0	Mm.482651	NR_028079	ENSMUSG00000065016	Snora3	MBI-28	small nucleolar RNA, H/ACA box 3	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43965166-4	chr4	43965064	43965264	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027450, intron 1 of 4)	intron (NM_027450, intron 1 of 4)	7462.0	NM_027450	384009.0	Mm.22213	NM_027450	ENSMUSG00000028480	Glipr2	5730414A08Rik|C77180|GAPR-1	GLI pathogenesis-related 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-45418394-3	chr4	45418292	45418492	+	849.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9626.0	NM_001009949	230125.0	Mm.260210	NM_001009949	ENSMUSG00000045973	Slc25a51	9130208E07Rik|D130005A03Rik|Gm138|Mcart1	solute carrier family 25, member 51	protein-coding	2.00962604030491	1.3643248860376	1.65460436652308	1.61136796498401	1.54810058584388	1.37185250902769	2.02021694570633	1.8563121680338	0.125608416239188	0.905870727720667	0.998431161219273
Merged-chr7-67380339-4	chr7	67380253	67380453	+	891.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7495.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-137541400-3	chr6	137541294	137541494	+	733.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271588, intron 1 of 20)	intron (NM_001271588, intron 1 of 20)	-21499.0	NM_001271589	13860.0	Mm.235346	NM_007945	ENSMUSG00000015766	Eps8	AW261790	epidermal growth factor receptor pathway substrate 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-29655676-4	chr2	29655592	29655792	+	903.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054050, intron 1 of 23)	intron (NM_054050, intron 1 of 23)	35972.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-120259752-6	chr13	120259578	120259778	+	813.455566	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3417.0	NM_001310627	236546.0	Mm.247428	NM_199060	ENSMUSG00000095071	AF067061	-	cDNA sequence AF067061	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-134493152-2	chr5	134493052	134493252	+	562.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039162, intron 13 of 15)	intron (NM_001039162, intron 13 of 15)	-36436.0	NM_001081464	57080.0	Mm.332735	NM_020331	ENSMUSG00000023079	Gtf2ird1	1700012P16Rik|BEN|Cream1|ESTM9|GTF3|Gtf2il|MusTRD1|Tg(Alb1-Myc)166.8Sst|WBSCR11|X83320	general transcription factor II I repeat domain-containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-59596973-2	chr2	59596873	59597073	+	590.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15069.0	NM_198294	66860.0	Mm.27917	NM_198294	ENSMUSG00000035168	Tanc1	1200003E16Rik|Tanc|mKIAA1728	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-66333543-2	chr8	66333443	66333643	+	647.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175188, intron 4 of 7)	MTB_Mm|LTR|ERVL-MaLR	-52758.0	NM_001166375	72925.0	Mm.380457	NM_175188	ENSMUSG00000036469	March1	2900024D24Rik|BB085186	membrane-associated ring finger (C3HC4) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139819302-2	chr5	139819202	139819402	+	652.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5019.0	NM_001161548	231832.0	Mm.482655	NM_144914	ENSMUSG00000036687	Tmem184a	Sdmg1	transmembrane protein 184a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-61767910-4	chr18	61767807	61768007	+	999.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178928, intron 1 of 18)	intron (NM_178928, intron 1 of 18)	18755.0	NM_178928	106877.0	Mm.26632	NM_178928	ENSMUSG00000033032	Afap1l1	AI173486	actin filament associated protein 1-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4743420-4	chr16	4743313	4743513	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010443, intron 1 of 5)	IAPLTR1a_Mm|LTR|ERVK	1800.0	NM_010443	15369.0	Mm.272866	NM_010443	ENSMUSG00000004070	Hmox2	HO-2|HO2	heme oxygenase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-22187830-1	chr8	22187730	22187930	+	601.0	f1_balb.idr	Intergenic	BGLII_Mur|LTR|ERVK	-2011.0	NM_001004140	80986.0	Mm.22448	NM_001004140	ENSMUSG00000037725	Ckap2	AI461656|AW228814|LB1	cytoskeleton associated protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-12370325-2	chr17	12370225	12370425	+	620.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8284.0	NM_008877	18815.0	Mm.971	NM_008877	ENSMUSG00000059481	Plg	AI649309|Pg	plasminogen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98051803-4	chr11	98051712	98051912	+	971.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146028, intron 1 of 10)	intron (NM_146028, intron 1 of 10)	1650.0	NM_146028	217154.0	Mm.181008	NM_146028	ENSMUSG00000017400	Stac2	24b2|24b2/STAC2|AW240854	SH3 and cysteine rich domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-43538743-4	chr7	43538648	43538848	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5577.0	NM_021293	12489.0	Mm.140157	NM_021293	ENSMUSG00000004609	Cd33	Siglec-3|gp67	CD33 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27728938-2	chr2	27728838	27729038	+	655.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290482, intron 1 of 9)	intron (NM_001290482, intron 1 of 9)	18355.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-73755334-4	chr15	73755230	73755430	+	720.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001166389, exon 4 of 6)	exon (NM_001166389, exon 4 of 6)	7304.0	NM_008975	19245.0	Mm.390807	NM_008975	ENSMUSG00000059895	Ptp4a3	AV088979|Prl-3|pPtp4a3	protein tyrosine phosphatase 4a3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-154604386-2	chr2	154604286	154604486	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021534)	promoter-TSS (NM_021534)	-713.0	NM_021534	59038.0	Mm.24673	NM_021534	ENSMUSG00000000876	Pxmp4	3010018P03Rik|Pmp24	peroxisomal membrane protein 4	protein-coding	0.275194333606719	0.154925280983484	0.319252484611733	0.145148506603252	0.688618127336104	0.156171699307942	0.7076913851838	0.441563887256834	2.43850978381708	0.212950675923227	1
Merged-chr8-107116204-4	chr8	107116099	107116299	+	769.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19654.0	NR_104410	21750.0	Mm.6402	NM_009353	ENSMUSG00000031921	Terf2	TRF2	telomeric repeat binding factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133622664-1	chr4	133622564	133622764	+	604.0	f1_c57bl6.idr	intron (NM_001017968, intron 2 of 7)	intron (NM_001017968, intron 2 of 7)	10765.0	NM_001017968	503610.0	Mm.331948	NM_001017968	ENSMUSG00000037553	Zdhhc18	-	zinc finger, DHHC domain containing 18	protein-coding	2.53413289435276	2.6000574306136	3.58455269703368	1.73626450709448	2.65518950323321	2.75336319467084	3.30317282161602	2.30874561961452	0.0224642181395578	0.97724685389251	0.998431161219273
Merged-chr16-16526888-4	chr16	16526814	16527014	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301817, intron 1 of 16)	intron (NM_001301817, intron 1 of 16)	497.0	NM_001301818	224014.0	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165948232-4	chr2	165948158	165948358	+	952.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44379.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	2.02138674964693	2.71133316426423	1.91065620703002	2.25113119902761	2.25031360830161	2.89919052269555	1.2721255850735	1.49048474013229	-0.232594609091792	0.813668608526694	0.998431161219273
Merged-chr11-63045992-4	chr11	63045900	63046100	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15659.0	NM_027660	71062.0	Mm.23534	NM_027660	ENSMUSG00000042189	Tekt3	4933407G07Rik	tektin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-112282893-4	chr5	112282768	112282968	+	953.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001326590, intron 1 of 5)	intron (NM_001326590, intron 1 of 5)	6177.0	NM_009419	22022.0	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-27228242-4	chr3	27228139	27228339	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 3 of 4)	intron (NM_178772, intron 3 of 4)	45235.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-10714182-3	chr15	10714094	10714294	+	687.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030690)	promoter-TSS (NM_030690)	-96.0	NM_001356534	75646.0	Mm.212395	NM_030690	ENSMUSG00000022246	Rai14	1700008J19Rik|1700020L11Rik|Ankycorbin|Norpeg|mKIAA1334	retinoic acid induced 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-31512268-4	chr17	31512140	31512340	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_021322, exon 1 of 11)	exon (NM_021322, exon 1 of 11)	247.0	NM_021322	57773.0	Mm.143771	NM_021322	ENSMUSG00000024037	Wdr4	AI415180|AI448349|D530049K22Rik|Wh	WD repeat domain 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-57891873-2	chr14	57891773	57891973	+	837.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1537.0	NM_001360097	75965.0	Mm.29044	NM_029492	ENSMUSG00000021969	Zdhhc20	4930542A17Rik|5033406L14Rik|AI448102|B230110O18Rik|HK11	zinc finger, DHHC domain containing 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150002124-4	chr4	150002026	150002226	+	895.3583369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173371, intron 1 of 4)	B3|SINE|B2	1110.0	NM_001291004	100198.0	Mm.22183	NM_173371	ENSMUSG00000028980	H6pd	AI785303|G6pd1|Gpd-1|Gpd1	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	protein-coding	2.45177725780082	2.61621458327118	2.5307384725334	2.87462520718649	2.35848107232553	2.87609312959853	3.06261668853727	2.888882706428	0.382422494001452	0.587692691952988	0.968220700072259
Merged-chr19-29522962-4	chr19	29522844	29523044	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015567)	promoter-TSS (NR_015567)	662.0	NM_001081319	226089.0	Mm.353838	NM_177641	ENSMUSG00000038658	Ric1	C030046E11Rik|C130057E09Rik|Kiaa1432	RAB6A GEF complex partner 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-52316737-2	chr6	52316637	52316837	+	591.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_007966, exon 3 of 3)	exon (NM_007966, exon 3 of 3)	-1905.0	NR_038163	70593.0	Mm.158412	NR_038163	ENSMUSG00000086126	Evx1os	5730457N03Rik|Evx1as	even skipped homeotic gene 1, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-89581150-7	chr1	89581065	89581265	+	954.595215	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037136, intron 1 of 16)	CpG	102727.0	NR_015540	74403.0	Mm.444291	NR_015540		4933400F21Rik	1700091C04Rik|4930565K10Rik	RIKEN cDNA 4933400F21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-43383556-4	chr6	43383438	43383638	+	934.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013861, intron 8 of 8)	intron (NM_013861, intron 8 of 8)	-58891.0	NR_045988	319812.0	Mm.446393	NR_045988		9430018G01Rik	-	RIKEN cDNA 9430018G01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-124066741-1	chr8	124066641	124066841	+	762.0	f0_balb.idr	Intergenic	Intergenic	43268.0	NM_001029876	382038.0	Mm.334891	NM_001029876	ENSMUSG00000031976	Urb2	C77575|mKIAA0133	URB2 ribosome biogenesis 2 homolog (S. cerevisiae)	protein-coding	-0.490044522925211	-0.639451268114169	-0.643965710649803	-0.647470665186865	0.35978134488658	-0.638438016065339	-0.642967279096391	-0.646856963459146	2.78344388956976	0.310332458575292	1
Merged-chr5-76184449-4	chr5	76184334	76184534	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011626, intron 1 of 5)	CpG	554.0	NM_011626	21982.0	Mm.790	NM_011626	ENSMUSG00000029234	Tmem165	AV026557|Tpardl|Tparl|pFT27	transmembrane protein 165	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-116638525-1	chr3	116638425	116638625	+	795.0	f0_c57.idr	intron (NM_008246, intron 8 of 11)	intron (NM_008246, intron 8 of 11)	-23938.0	NM_030016	229780.0	Mm.259648	NM_030016	ENSMUSG00000033439	Trmt13	4631408H19Rik|A330067P21|A930028L21Rik|Ccdc76	tRNA methyltransferase 13	protein-coding	2.73351003768546	2.61793483833728	3.03867562027044	2.68822368482379	2.36222352634281	2.76249784094938	2.67395754115912	2.79902296142563	-0.247984595275823	0.722375442764222	0.998431161219273
Merged-chr3-100684786-2	chr3	100684686	100684886	+	699.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_010763, exon 1 of 13)	exon (NM_010763, exon 1 of 13)	687.0	NM_010763	17156.0	Mm.271617	NM_010763	ENSMUSG00000008763	Man1a2	AI428775|AI528764|AI854422|Man1b|PCR2	mannosidase, alpha, class 1A, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-53229341-4	chr18	53229239	53229439	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16323.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	3.08043335530495	3.18540406704734	3.32729125765701	2.80432831966295	2.68507983104841	2.88556439219002	2.79162406080754	2.91986115759095	-0.532874988375446	0.400230598348588	0.885176145862419
Merged-chr14-105176389-3	chr14	105176290	105176490	+	711.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134077, intron 1 of 20)	intron (NM_134077, intron 1 of 20)	937.0	NM_134077	74213.0	Mm.474531	NM_134077	ENSMUSG00000022119	Rbm26	1700009P03Rik|AI447318|C230097K14Rik|C86225|MLZ-393|Pro1777|Se70-2	RNA binding motif protein 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-125383548-12	chr5	125383442	125383642	+	910.99585	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6475.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-35107634-2	chr5	35107534	35107734	+	790.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1937.0	NM_013587	16976.0	Mm.277661	NM_013587	ENSMUSG00000029103	Lrpap1	AA617339|AI790446|AU042172|C77774|HBP44|RAP	low density lipoprotein receptor-related protein associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-65127545-1	chr13	65127445	65127645	+	579.666687	f0_balb.idr	Intergenic	Intergenic	-14563.0	NM_133680	66631.0	Mm.239196	NM_133680	ENSMUSG00000038212	Mfsd14b	5730414C17Rik|AU045608|AW539692|Hiatl1	major facilitator superfamily domain containing 14B	protein-coding	0.957070038980319	0.238984174463395	0.229716173146871	0.222472456630306	1.39225180049028	0.241055244732755	0.621108715518382	0.223743970893794	1.29411431097469	0.515462972374757	1
Merged-chr2-59210597-2	chr2	59210497	59210697	+	567.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 1 of 20)	intron (NM_175464, intron 1 of 20)	49747.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-102042399-4	chr7	102042301	102042501	+	838.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029211, intron 2 of 8)	MIR|SINE|MIR	22764.0	NM_029211	75212.0	Mm.101141	NM_029211	ENSMUSG00000070426	Rnf121	4930544L10Rik	ring finger protein 121	protein-coding	0.285961430279859	0.763470027356005	0.0248558682002271	0.188799786941449	0.0139898682672069	0.541958770453007	0.026140120215541	0.0211448369075846	-1.26288356055228	0.545608991523462	1
Merged-chr13-102722486-4	chr13	102722354	102722554	+	758.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	28896.0	NM_008533	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-88452606-4	chr17	88452509	88452709	+	968.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355742, intron 1 of 5)	L1Md_F2|LINE|L1	11905.0	NM_001355742	14236.0	Mm.112824	NM_180974	ENSMUSG00000034998	Foxn2	3230402J05Rik|6030465J18Rik|Fkh19|Foxn1|HTLF	forkhead box N2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-74004393-4	chr13	74004303	74004503	+	886.7666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MEc|LINE|L1	-5016.0	NM_182839	72948.0	Mm.39752	NM_182839	ENSMUSG00000021573	Tppp	2900041A09Rik|AI849835	tubulin polymerization promoting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-36707164-2	chr16	36707064	36707264	+	992.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285788, intron 1 of 7)	intron (NM_001285788, intron 1 of 7)	13186.0	NM_001285791	106347.0	Mm.17807	NM_134109	ENSMUSG00000022900	Ildr1	AU041483|AU044638	immunoglobulin-like domain containing receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-22662522-2	chr11	22662422	22662622	+	857.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	150239.0	NM_153596	103765.0	Mm.221274	NM_153596	ENSMUSG00000049904	Tmem17	AI503894|AW049890	transmembrane protein 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-134933035-4	chr5	134932793	134932993	+	836.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359536, intron 2 of 5)	intron (NM_001359536, intron 2 of 5)	369.0	NM_001359537	79565.0	Mm.34235	NM_024479	ENSMUSG00000040557	Mettl27	AW492986|BC002286|Wbscr27	methyltransferase like 27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-45216713-3	chr2	45216599	45216799	+	825.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-99257.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-46145851-3	chr14	46145751	46145951	+	672.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61824.0	NR_002875	218963.0	Mm.282093	NR_002875		Gm1821	-	ubiquitin pseudogene	pseudo	-0.758347287564893	-0.74825301332679	-0.751563306489257	-0.754115205124581	-0.609365883600379	-0.116064318472523	-0.567170477012284	-0.75366953033884	3.21483706802269	0.231692543679151	1
Merged-chr2-73273199-2	chr2	73273099	73273299	+	546.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001005343, exon 2 of 2)	exon (NM_001005343, exon 2 of 2)	1273.0	NM_001005343	381373.0	Mm.330293	NM_001005343	ENSMUSG00000068859	Sp9	-	trans-acting transcription factor 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-74773429-4	chr18	74773293	74773493	+	948.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	5062.0	NR_028560	100217466.0		NR_028560		Scarna17	MBII-119	small Cajal body-specific RNA 17	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35907824-2	chr17	35907724	35907924	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347378, intron 6 of 11)	B2_Mm2|SINE|B2	2244.0	NM_001142745	73242.0	Mm.273155	NM_028476	ENSMUSG00000024426	Atat1	0610011P08Rik|2610008K08Rik|2610110G12Rik|3110080J08Rik|Mec17|TAT	alpha tubulin acetyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-97313393-3	chr7	97313326	97313526	+	825.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177412, intron 7 of 9)	intron (NM_001177412, intron 7 of 9)	12538.0	NM_001177412	244144.0	Mm.297541	NM_001177412	ENSMUSG00000035713	Usp35	Gm1088|Gm493	ubiquitin specific peptidase 35	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70824172-1	chr8	70824072	70824272	+	1000.0	f1_balb.idr	Intergenic	L1MB5|LINE|L1	15548.0	NM_027560	70807.0	Mm.24215	NM_027560	ENSMUSG00000002910	Arrdc2	4632416I05Rik|Ilad1	arrestin domain containing 2	protein-coding	-0.46940064029184	-0.455955402424306	-0.460349390564079	-0.463746670527688	-0.468558434167481	0.0684194636190325	0.250089184293825	-0.46315271595132	3.63951279130103	0.169023049387002	1
Merged-chr15-59720433-2	chr15	59720333	59720533	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	71779.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80073946-2	chr7	80073846	80074046	+	593.375	f1_balb.idr|f1_c57bl6.idr	intron (NR_045695, intron 1 of 2)	intron (NR_045695, intron 1 of 2)	1311.0	NR_045695	100859962.0	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-16576721-2	chr16	16576621	16576821	+	718.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301817, intron 1 of 16)	RMER30|DNA|hAT-Charlie	-16502.0	NM_139232	224014.0	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-89943408-4	chr1	89943304	89943504	+	770.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12228.0	NM_010262	14472.0	Mm.204730	NM_010262	ENSMUSG00000034486	Gbx2	D130058E05Rik|Gbx-2|MMoxA|Stra7	gastrulation brain homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-118391400-1	chr2	118391300	118391500	+	639.0	f0_balb.idr	intron (NM_001177806, intron 1 of 37)	intron (NM_001177806, intron 1 of 37)	2288.0	NM_001177806	27103.0	Mm.217616	NM_013719	ENSMUSG00000005102	Eif2ak4	2610011M03|GCN2|MGCN2	eukaryotic translation initiation factor 2 alpha kinase 4	protein-coding	0.426612510861521	0.332018095825107	-0.00203069307486881	0.389361193955808	-0.0104711649936229	0.00356996890779582	0.307441929058732	-0.00492668046805711	-1.96810114101997	0.365025556881525	1
Merged-chr17-83547353-2	chr17	83547253	83547453	+	655.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33020.0	NM_001159529	20463.0	Mm.30072	NM_009187	ENSMUSG00000024248	Cox7a2l	COX7AR|COX7RP|EB1|SIG-81|SIG81|Silg81	cytochrome c oxidase subunit VIIa polypeptide 2-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-148987819-4	chr3	148987733	148987933	+	929.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-33198.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-112389133-2	chr1	112389033	112389233	+	547.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-524215.0	NM_001081316	319901.0	Mm.103468	NM_001081316	ENSMUSG00000038702	Dsel	9330132E09Rik|DS-epi2	dermatan sulfate epimerase-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100432070-2	chr7	100432172	100432372	+	670.333374	f1_balb.idr|f1_c57bl6.idr	exon (NM_001017985, exon 23 of 33)	exon (NM_001017985, exon 23 of 33)	-40719.0	NM_009464	22229.0	Mm.6254	NM_009464	ENSMUSG00000032942	Ucp3	AI645527|Slc25a9|UCP-3	uncoupling protein 3 (mitochondrial, proton carrier)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-131977447-4	chr4	131977341	131977541	+	870.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183428, intron 9 of 20)	intron (NM_183428, intron 9 of 20)	55670.0	NM_001201367	623230.0	Mm.421179	NM_001201367	ENSMUSG00000070720	Tmem200b	EG623230	transmembrane protein 200B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119089815-2	chr11	119089715	119089915	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3578.0	NM_007625	12418.0	Mm.268070	NM_007625	ENSMUSG00000039989	Cbx4	MPc2|PC2	chromobox 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-61124875-5	chr18	61124806	61125006	+	809.299988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001037859, exon 14 of 22)	exon (NM_001037859, exon 14 of 22)	7438.0	NR_105949	102466212.0		NR_105949	ENSMUSG00000098389	Mir6983	Gm27496|mmu-mir-6983	microRNA 6983	ncRNA	2.83398074879355	2.29751118442765	2.22251908267998	1.85167304306157	2.30262468035966	2.45258705006202	2.08798178529653	2.92947625767622	0.274614750090718	0.740361496069777	0.998431161219273
Merged-chr11-110475164-3	chr11	110475063	110475263	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356352, intron 1 of 11)	intron (NM_001356352, intron 1 of 11)	-3352.0	NM_001356347	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	1.59566833632702	1.79599766484829	1.95919684328046	1.02480930997448	1.60896257322336	1.80990950642935	1.9756779099078	1.02745187775173	0.0404912740419159	0.972942408551486	0.998431161219273
Merged-chr16-49896376-4	chr16	49896276	49896476	+	921.4249880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010581, exon 7 of 10)	exon (NM_010581, exon 7 of 10)	40722.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-23767323-2	chr11	23767223	23767423	+	616.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009044, intron 1 of 9)	intron (NM_009044, intron 1 of 9)	3647.0	NM_009044	19696.0	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81450298-4	chr10	81450210	81450410	+	957.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22821.0	NM_001311127	319586.0	Mm.152689	NM_176954	ENSMUSG00000034818	Celf5	4930565A21Rik|Brunol5	CUGBP, Elav-like family member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-95508375-2	chr9	95508275	95508475	+	713.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357977, intron 1 of 25)	RMER15|LTR|ERVL	3621.0	NM_001357975	67958.0	Mm.292742	NM_026476	ENSMUSG00000032407	U2surp	2610101N10Rik|AU023006|Sr140	U2 snRNP-associated SURP domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-121842864-4	chr5	121842763	121842963	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-6004.0	NM_008507	16923.0	Mm.65493	NM_008507	ENSMUSG00000042594	Sh2b3	AI429800|Lnk	SH2B adaptor protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45406700-5	chr7	45406580	45406780	+	711.700012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010596, exon 1 of 2)	exon (NM_010596, exon 1 of 2)	720.0	NM_010596	16495.0	Mm.12955	NM_010596	ENSMUSG00000038201	Kcna7	Kv1.7	potassium voltage-gated channel, shaker-related subfamily, member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-78317035-4	chr16	78316941	78317141	+	873.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025192, intron 1 of 6)	B3A|SINE|B2	15370.0	NM_001276263	13052.0	Mm.66222	NM_009988	ENSMUSG00000022865	Cxadr	2610206D03Rik|AU016810|AW553441|CAR|MCAR|MCVADR	coxsackie virus and adenovirus receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-104118481-2	chr8	104118381	104118581	+	655.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009868, intron 2 of 11)	ORR1B2|LTR|ERVL-MaLR	-12608.0	NR_131138	546096.0	Mm.252264	NR_131138	ENSMUSG00000110053	Gm29682	Gm45664	predicted gene, 29682	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-7295739-4	chr7	7295637	7295837	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357104, intron 1 of 9)	intron (NM_001357104, intron 1 of 9)	3099.0	NM_001302386	12727.0	Mm.297883	NM_011334	ENSMUSG00000000605	Clcn4	Clc4-2|Clcn4-2|clC-4	chloride channel, voltage-sensitive 4	protein-coding	3.43416005109129	3.78063228288183	3.35068788738464	4.4532851335066	4.18781368684694	4.74254426834005	4.06478716168207	4.81496129408368	0.876872967290758	0.0586996508534423	0.358107666579458
Merged-chr3-54493769-3	chr3	54493678	54493878	+	848.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	132671.0	NM_015784	50706.0	Mm.236067	NM_015784	ENSMUSG00000027750	Postn	A630052E07Rik|AI747096|OSF-2|Osf2|PLF|PN	periostin, osteoblast specific factor	protein-coding	3.67866130667067	3.74956382138364	4.47173165420206	4.13931085663672	3.28862245007035	3.0072452391477	3.80594989799385	3.3703282399328	-0.943578845920663	0.0637343679376514	0.376074563860299
Merged-chr19-46532504-2	chr19	46532404	46532604	+	873.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019718, intron 5 of 5)	intron (NM_019718, intron 5 of 5)	30856.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-138922199-4	chr4	138922040	138922240	+	855.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8193.0	NM_028453	73162.0	Mm.238081	NM_028453	ENSMUSG00000041161	Otud3	3110030K17Rik	OTU domain containing 3	protein-coding	0.779244444310825	0.524937527439549	1.21208443788934	0.509522951030341	1.25901895722835	0.731910765415729	0.86483732218896	0.685605218344014	0.573552772903654	0.7155418070301	1
Merged-chr10-86706926-2	chr10	86706826	86707026	+	662.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001003910, intron 1 of 15)	intron (NM_001003910, intron 1 of 15)	1115.0	NM_001003939	103220.0	Mm.440762	NM_153595	ENSMUSG00000044937	Ttc41	AI449705|AU041509|Gnn	tetratricopeptide repeat domain 41	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-12411491-2	chr13	12411391	12411591	+	649.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_144835, intron 16 of 44)	intron (NM_144835, intron 16 of 44)	16116.0	NM_144835	217995.0	Mm.171186	NM_144835	ENSMUSG00000050244	Heatr1	AA517551|B130016L12Rik|BC019693	HEAT repeat containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-63791164-1	chr11	63791064	63791264	+	875.0	f1_c57bl6.idr	Intergenic	Intergenic	131120.0	NM_018805	54710.0	Mm.274426	NM_018805	ENSMUSG00000070407	Hs3st3b1	3-OST-3B|3OST3B1|3Ost3b|AU041882|AW536289|Hs3st3b|m3-OST-3B	heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	protein-coding	1.08464104916605	1.37144986039225	0.680740660400018	1.37594142649678	1.09476022795834	1.50190625749233	0.683322079837067	0.673243516923767	-0.492073362592785	0.744960665463765	0.998431161219273
Merged-chr15-4026579-4	chr15	4026488	4026688	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_028266, exon 1 of 2)	non-coding (NR_028266, exon 1 of 2)	160.0	NM_024188	67041.0	Mm.13445	NM_024188	ENSMUSG00000022186	Oxct1	2610008O03Rik|Oxct|Oxct2a|Scot-s	3-oxoacid CoA transferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-44360803-3	chr10	44360730	44360930	+	949.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358596, intron 6 of 6)	intron (NM_001358596, intron 6 of 6)	1154.0	NR_035450	100316688.0		NR_035450	ENSMUSG00000089260	Mir1929	mir-1929|mmu-mir-1929	microRNA 1929	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127091290-3	chr7	127091201	127091401	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178901)	promoter-TSS (NM_178901)	-135.0	NM_178901	101602.0	Mm.490357	NM_178901	ENSMUSG00000045165	AI467606	-	expressed sequence AI467606	protein-coding	1.89099311110943	1.8022202174178	1.26955633788346	1.03484024283124	2.06366776195415	1.81609071694462	1.75346162175494	1.24674466577899	0.625672963840175	0.588318714768788	0.968414048967832
Merged-chr16-59583753-4	chr16	59583649	59583849	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-27997.0	NM_174848	224273.0	Mm.246424	NM_174848	ENSMUSG00000022723	Crybg3	5031404N19|AU022790|Gm9581	beta-gamma crystallin domain containing 3	protein-coding	3.12375273606694	3.40602488153181	3.29506810959305	3.57038007505456	3.29507923371153	3.23586598203384	2.77371430092713	3.22090526194518	-0.345133381828896	0.548470869169528	0.958239999266479
Merged-chr2-167762762-2	chr2	167762662	167762862	+	919.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	71585.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-38931944-4	chr12	38931847	38932047	+	910.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	148236.0	NM_001163154	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117541970-2	chr8	117541870	117542070	+	570.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172285, intron 2 of 32)	intron (NM_172285, intron 2 of 32)	43695.0	NM_172285	234779.0	Mm.192699	NM_172285	ENSMUSG00000034330	Plcg2	PLC-gamma-2|PLCgamma2|Plcg-2	phospholipase C, gamma 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-59465651-4	chr4	59465537	59465737	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27004.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-36673374-4	chr16	36673272	36673472	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7295.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21929468-2	chr9	21929368	21929568	+	667.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001164614, exon 3 of 13)	exon (NM_001164614, exon 3 of 13)	-1933.0	NM_001253870	235043.0	Mm.253329	NM_178577	ENSMUSG00000040883	Tmem205	-	transmembrane protein 205	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-103216752-2	chr11	103216652	103216852	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177801, intron 1 of 4)	intron (NM_177801, intron 1 of 4)	1680.0	NM_177801	328019.0	Mm.189646	NM_177801	ENSMUSG00000044787	Spata32	4933400C05Rik|VAD1.2	spermatogenesis associated 32	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-31168838-2	chr6	31168738	31168938	+	623.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_110470, intron 2 of 2)	intron (NR_110470, intron 2 of 2)	49636.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-63258374-4	chr13	63258264	63258464	+	939.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289926, intron 13 of 15)	intron (NM_001289926, intron 13 of 15)	18335.0	NR_110521	72061.0	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	2.16813002418444	2.42805266486972	2.92026922110191	2.15394816379017	2.18571860094761	1.74560477698205	2.86520174606336	2.40969242995853	-0.190865449581598	0.819773013794662	0.998431161219273
Merged-chr6-116631173-4	chr6	116631056	116631256	+	976.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-2157.0	NM_026057	67255.0	Mm.18810	NM_026057	ENSMUSG00000059878	Zfp422	2900028O21Rik|AU041373|KOX15|Krox-25-2|Krox-26|Krox25|Krox26|Znf22	zinc finger protein 422	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-39338134-3	chr8	39338024	39338224	+	877.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_044988, intron 2 of 3)	L1_Mus3|LINE|L1	40144.0	NR_044988	621335.0	Mm.208080	NR_044988	ENSMUSG00000109827	Gm6213	EG621335	predicted gene 6213	ncRNA	-1.58994551673671	-1.55912852307891	-1.56844783632235	-1.57610299769523	-1.18549093183599	-1.55710898902261	-1.56633814807757	-1.57473272746952	1.78703309985663	0.610309988231842	1
Merged-chr8-4162838-2	chr8	4162721	4162921	+	905.375	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3746.0	NM_001039578	213027.0	Mm.437106	NM_153536	ENSMUSG00000011832	Evi5l	1700084G18Rik|2310039H16Rik|3110007G05Rik|B130050I23Rik	ecotropic viral integration site 5 like	protein-coding	0.039524422910781	-0.584015058130253	-0.587569345382929	-0.167939531041162	-0.594169294080427	-0.583212987198297	-0.586785975577609	-0.589829136416591	-3.36268266924163	0.228208989188394	1
Merged-chr6-58756820-4	chr6	58756720	58756920	+	854.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74645.0	NM_001361967	73998.0	Mm.191892	NM_028705	ENSMUSG00000029804	Herc3	5730409F18Rik|AI646603|mKIAA0032	hect domain and RLD 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-120731545-4	chr2	120731467	120731667	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026891)	promoter-TSS (NM_026891)	-50.0	NM_026891	68968.0	Mm.2289	NM_026891	ENSMUSG00000027284	Cdan1	1500015A01Rik|AI448026|AW492297|CDA-I|CDA1|CDAI	congenital dyserythropoietic anemia, type I (human)	protein-coding	3.65257054895487	3.00452739676116	3.32261785320253	3.04117695021886	3.38969999598536	3.97416690911014	2.92452005744762	3.15557516128171	0.208308116937042	0.722561522535722	0.998431161219273
Merged-chr18-46287394-2	chr18	46287294	46287494	+	716.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001160399, exon 7 of 10)	exon (NM_001160399, exon 7 of 10)	-6544.0	NM_172627	225467.0	Mm.262096	NM_172627	ENSMUSG00000024477	Pggt1b	2010207C17Rik|2610100E13|AI451237|AI551093|BGG1|GGT1	protein geranylgeranyltransferase type I, beta subunit	protein-coding	-1.84456824087626	-1.81369603968745	-1.82303204814395	-1.83070092346192	-1.84240106943552	-1.51787681909439	-1.82091858046888	-1.82932819844659	1.64481029852639	0.639921510788462	1
Merged-chr13-43557275-3	chr13	43557155	43557355	+	924.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081059, intron 1 of 8)	intron (NM_001081059, intron 1 of 8)	2936.0	NM_001081059	76137.0	Mm.426290	NM_001081059	ENSMUSG00000021371	Mcur1	6230416A05Rik|AU015498|AV136929|AW554392|C88263|Ccdc90a	mitochondrial calcium uniporter regulator 1	protein-coding	1.83058039595024	2.20126130301536	1.9782878170309	2.19603840787229	2.93140867013037	2.21739099443924	1.61169000132369	2.6877888010817	0.963244383899519	0.277373238026062	0.781366007374687
Merged-chr5-139042543-3	chr5	139042447	139042647	+	774.355591	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359099, intron 7 of 10)	intron (NM_001359099, intron 7 of 10)	-47594.0	NM_008808	18590.0	Mm.2675	NM_008808	ENSMUSG00000025856	Pdgfa	-	platelet derived growth factor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-113218516-2	chr10	113218416	113218616	+	570.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-289490.0	NM_001033474	382423.0	Mm.431239	NM_001033474	ENSMUSG00000074748	Atxn7l3b	4921506J03Rik|6230409E21Rik|AI315132	ataxin 7-like 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-17515776-2	chr17	17515676	17515876	+	964.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3C|LINE|L1	108713.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-53616454-1	chr10	53616354	53616554	+	900.0	f0_balb.idr	intron (NM_027830, intron 5 of 13)	intron (NM_027830, intron 5 of 13)	13985.0	NM_027830	71567.0	Mm.278221	NM_027830	ENSMUSG00000058298	Mcm9	9030408O17Rik|Gm235|Mcmdc1	minichromosome maintenance 9 homologous recombination repair factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139371375-4	chr5	139371276	139371476	+	984.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028469, intron 2 of 4)	intron (NM_028469, intron 2 of 4)	-1631.0	NR_029768	723898.0		NR_029768	ENSMUSG00000065593	Mir339	Mirn339|mir-339|mmu-mir-339	microRNA 339	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-181257074-5	chr1	181256986	181257186	+	971.914307	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45108.0	NM_145514	226757.0	Mm.289082	NM_145514	ENSMUSG00000038733	Wdr26	1600024A01Rik|AA693241|AI447817|AU044014|C77982|Gid7	WD repeat domain 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-62750573-3	chr5	62750471	62750671	+	886.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178407, intron 1 of 32)	MTA_Mm|LTR|ERVL-MaLR	15606.0	NM_178407	212285.0	Mm.244403	NM_178407	ENSMUSG00000037999	Arap2	Centd1|Gm148|mKIAA0580	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-38781035-4	chr12	38780864	38781064	+	859.0729369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007960, exon 2 of 13)	exon (NM_007960, exon 2 of 13)	882.0	NM_007960	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-4500464-3	chr7	4500419	4500619	+	861.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029834, intron 1 of 21)	intron (NM_029834, intron 1 of 21)	1161.0	NM_029834	232807.0	Mm.360391	NM_029834	ENSMUSG00000019254	Ppp1r12c	2410197A17Rik|AI839747|B430101M08|Mbs85	protein phosphatase 1, regulatory (inhibitor) subunit 12C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44138894-2	chr9	44138794	44138994	+	714.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_023061, exon 6 of 16)	exon (NM_023061, exon 6 of 16)	4236.0	NM_001359530	84004.0	Mm.275003	NM_023061	ENSMUSG00000032135	Mcam	1-gicerin|AV025631|CD146|CD149|Muc18|s-endo|s-gicerin	melanoma cell adhesion molecule	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-87624459-2	chr1	87624359	87624559	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110192, intron 1 of 26)	intron (NM_001110192, intron 1 of 26)	4147.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-103309866-2	chr15	103309766	103309966	+	970.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030720, intron 1 of 1)	intron (NM_030720, intron 1 of 1)	572.0	NM_030720	80910.0	Mm.160369	NM_030720	ENSMUSG00000063234	Gpr84	EX33	G protein-coupled receptor 84	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-5296275-2	chr9	5296175	5296375	+	908.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-2242.0	NM_009807	12362.0	Mm.1051	NM_009807	ENSMUSG00000025888	Casp1	ICE|Il1bc	caspase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-61454610-3	chr2	61454499	61454699	+	666.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-123987.0	NM_011529	21353.0	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-164308468-2	chr1	164308368	164308568	+	932.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025505)	promoter-TSS (NM_025505)	796.0	NM_138314	171567.0	Mm.219428	NM_138314	ENSMUSG00000026575	Nme7	D530024H21Rik|Nm23-M7|Nm23-r7	NME/NM23 family member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65677277-2	chr9	65677177	65677377	+	692.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301307, intron 1 of 4)	intron (NM_001301307, intron 1 of 4)	729.0	NM_001301307	18247.0	Mm.116749	NM_010952	ENSMUSG00000040652	Oaz2	AZ-2|AZ2|Oaz2-ps|Sez15	ornithine decarboxylase antizyme 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-74778966-7	chr18	74778880	74779080	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028560)	promoter-TSS (NR_028560)	-232.0	NM_177470	52538.0	Mm.245724	NM_177470	ENSMUSG00000036880	Acaa2	0610011L04Rik|AI255831|AI265397|D18Ertd240e	acetyl-Coenzyme A acyltransferase 2 (mitochondrial 3-oxoacyl-Coenzyme A thiolase)	protein-coding	3.80755277372996	3.86613240845056	4.70580605017318	2.72208986721425	3.72794342813457	2.13216771181651	4.2481762342108	3.22467842396758	-0.578785596510185	0.36841330832932	0.862916999449085
Merged-chr17-33909364-4	chr17	33909289	33909489	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045146)	promoter-TSS (NR_045146)	-56.0	NR_149750	13163.0	Mm.271809	NM_007829	ENSMUSG00000002307	Daxx	-	Fas death domain-associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-17715873-4	chr12	17715752	17715952	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016677, intron 1 of 3)	intron (NM_016677, intron 1 of 3)	25043.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-40268565-4	chr4	40268470	40268670	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134097, intron 1 of 2)	CpG-9801	-1009.0	NM_001349093	100504309.0	Mm.392019	NM_001349093		Smim27	2010003O02Rik|Toporsos	small integral membrane protein 27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-8662421-2	chr3	8662321	8662521	+	753.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_010423)	TTS (NM_010423)	4617.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-17611828-4	chr6	17611717	17611917	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16A|LTR|ERVL	-25193.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	3.74760852529125	4.41152006119961	3.15759093398391	3.88382553982923	3.11502167730874	2.75279157510528	3.28710887607806	2.84898177481092	-1.31754131907657	0.020530460354858	0.182372504938983
Merged-chr1-180987973-4	chr1	180987881	180988081	+	797.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29588.0	NM_001312918	13849.0	Mm.9075	NM_010145	ENSMUSG00000038776	Ephx1	EH|Eph-1|Eph1|Epxh1|mEH	epoxide hydrolase 1, microsomal	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-7880828-3	chr14	7880737	7880937	+	691.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081427, intron 4 of 45)	intron (NM_001081427, intron 4 of 45)	62880.0	NM_134080	286940.0	Mm.489652	NM_134080	ENSMUSG00000025278	Flnb	AL024016|Fln-b	filamin, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-97788615-8	chr7	97788513	97788713	+	921.025024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357364)	promoter-TSS (NM_001357364)	72.0	NM_001357364	18479.0	Mm.260227	NM_011035	ENSMUSG00000030774	Pak1	AW045634|PAK-1|Paka	p21 (RAC1) activated kinase 1	protein-coding	3.26506362999606	1.76114585935384	3.79954175642787	3.10669986936237	3.29204879088827	3.68106788366675	3.31760267445029	3.59345016883775	0.480427574886555	0.461244981041209	0.920953234475195
Merged-chr11-4521102-4	chr11	4521001	4521201	+	852.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028860, intron 4 of 17)	intron (NM_028860, intron 4 of 17)	73714.0	NM_028860	74302.0	Mm.425669	NM_028860	ENSMUSG00000034354	Mtmr3	1700092A20Rik|AI255150|AW557713|FYVE-DSP1|ZFYVE10|mKIAA0371	myotubularin related protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-81199958-4	chr7	81199854	81200054	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13850.0	NM_008803	18584.0	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85577772-2	chr12	85577672	85577872	+	626.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1|SINE|Alu	-21333.0	NM_001205052	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-8358395-4	chr10	8358288	8358488	+	982.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177387, intron 2 of 7)	intron (NM_177387, intron 2 of 7)	160437.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	-1.18378942727406	-1.15669478905697	-0.457913181653105	-1.17806440097404	-1.18323730008524	-1.15415234459186	-1.16577117532349	-1.17633933179771	-2.81844548480871	0.412768592413622	1
Merged-chr5-90882376-4	chr5	90882275	90882475	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8870.0	NM_008176	14825.0	Mm.21013	NM_008176	ENSMUSG00000029380	Cxcl1	Fsp|Gro1|KC|Mgsa|N51|Scyb1|gro	chemokine (C-X-C motif) ligand 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117787472-2	chr11	117787372	117787572	+	795.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001195090, intron 9 of 15)	intron (NM_001195090, intron 9 of 15)	4814.0	NM_001195088	217356.0	Mm.116675	NM_181856	ENSMUSG00000050106	Tmc8	EVIN2|Ever2|mFLJ00400	transmembrane channel-like gene family 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-4948158-1	chr6	4948058	4948258	+	719.666687	f0_balb.idr	intron (NM_181595, intron 2 of 15)	intron (NM_181595, intron 2 of 15)	44838.0	NM_181595	243725.0	Mm.332901	NM_181595	ENSMUSG00000032827	Ppp1r9a	2810430P21Rik|4930518N04Rik|5330407E15|A230094E16Rik|BB181831|NRB|mKIAA1222|neurabin-I	protein phosphatase 1, regulatory (inhibitor) subunit 9A	protein-coding	-0.271620257002757	-0.253416920638098	0.37223429458788	-0.263923806329755	-0.27046983394432	0.659738770333586	-0.258020579972535	-0.263118866910103	0.793200698211915	0.751666388099621	1
Merged-chr1-84864878-4	chr1	84864782	84864982	+	971.974976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025386, intron 1 of 3)	intron (NM_025386, intron 1 of 3)	25041.0	NM_025386	66153.0	Mm.381192	NM_025386	ENSMUSG00000073633	Fbxo36	0610008D19Rik|1110020F21Rik|2410002G19Rik|D1Ertd757e	F-box protein 36	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-122199475-4	chr7	122199354	122199554	+	853.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13223.0	NM_001316689	26918.0	Mm.20452	NM_012016	ENSMUSG00000030866	Ern2	Ern1|Ire1|Ire1b|ire1-beta|mIre1	endoplasmic reticulum (ER) to nucleus signalling 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-132325263-2	chr3	132325163	132325363	+	565.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3B|LINE|L1	239971.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-35152063-3	chr19	35151963	35152163	+	840.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	186667.0	NR_035473	100316775.0		NR_035473	ENSMUSG00000089151	Mir1950	mmu-mir-1950	microRNA 1950	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-94007378-4	chr16	94007257	94007457	+	887.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019500, intron 1 of 2)	intron (NM_019500, intron 1 of 2)	1480.0	NM_019500	56173.0	Mm.328716	NM_019500	ENSMUSG00000047109	Cldn14	AI851731	claudin 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-116944450-5	chr8	116944303	116944503	+	835.611084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177700, intron 1 of 3)	intron (NM_177700, intron 1 of 3)	1010.0	NM_177700	234776.0	Mm.259736	NM_177700	ENSMUSG00000047388	Atmin	Asciz|gpg6|mKIAA0431	ATM interactor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-82744535-3	chr7	82744442	82744642	+	955.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_046004, exon 3 of 4)	non-coding (NR_046004, exon 3 of 4)	11102.0	NR_046004	77800.0	Mm.444811	NR_046004	ENSMUSG00000086690	4933406J10Rik	A930009F24Rik	RIKEN cDNA 4933406J10 gene	ncRNA	-0.0982250694555038	-0.31434024125574	0.0707792424120275	-0.319640752491341	-0.322845170794409	-0.00347964274178902	-0.316686676533192	-0.178497177523752	-0.514145041145611	0.828380592375528	1
Merged-chr10-42958324-3	chr10	42958219	42958419	+	854.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172938, exon 9 of 9)	3' UTR (NM_172938, exon 9 of 9)	32843.0	NR_153349	327749.0	Mm.428887	NR_153349		Gm5079	C230040G06	predicted gene 5079	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-78202375-2	chr17	78202275	78202475	+	798.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_015800, intron 1 of 16)	intron (NM_015800, intron 1 of 16)	2127.0	NM_015800	50766.0	Mm.311912	NM_015800	ENSMUSG00000024074	Crim1	AU015004	cysteine rich transmembrane BMP regulator 1 (chordin like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-33857171-4	chr14	33857037	33857237	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-45854.0	NR_131113	218902.0	Mm.107791	NR_131113	ENSMUSG00000115751	4930503F20Rik	4930453C15	RIKEN cDNA 4930503F20 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-103211246-2	chr3	103211146	103211346	+	627.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR41|LTR|ERV1	39591.0	NM_001356331	68183.0	Mm.104919	NM_026602	ENSMUSG00000005687	Bcas2	6430539P16Rik|AI132645|C76366|C80030	breast carcinoma amplified sequence 2	protein-coding	-0.00156801728580938	-0.344932635745674	0.192174869929461	-0.0635898372529629	-0.355718408950537	-0.344077381376126	-0.347883554877456	-0.351117758639933	-3.51499859851948	0.151699453155583	1
Merged-chr13-81125346-4	chr13	81125248	81125448	+	957.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 87 of 89)	intron (NM_054053, intron 87 of 89)	161274.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-57587565-4	chr8	57587435	57587635	+	931.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167981, intron 1 of 11)	intron (NM_001167981, intron 1 of 11)	-64218.0	NR_040698	100502619.0	Mm.393851	NR_040698		AW046200	-	expressed sequence AW046200	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-69987163-4	chr12	69987056	69987256	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022028)	promoter-TSS (NM_022028)	-154.0	NM_022028	64010.0	Mm.390480	NM_022028	ENSMUSG00000021067	Sav1	1700040G09Rik|Salv|Sav|WW45|Wwp3|Wwp4	salvador family WW domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-78856916-2	chr5	78856816	78857016	+	804.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MMERVK10C-int|LTR|ERVK	1391428.0	NR_131050	69370.0	Mm.426881	NR_131050	ENSMUSG00000107232	1700017L05Rik	-	RIKEN cDNA 1700017L05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114663124-2	chr11	114663024	114663224	+	682.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5419.0	NM_023372	67671.0	Mm.238817	NM_023372	ENSMUSG00000057322	Rpl38	0610025G13Rik|Rbt|Ts|Tss	ribosomal protein L38	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-57552616-2	chr9	57552516	57552716	+	856.7000119999999	f1_balb.idr|f1_c57bl6.idr	intron (NR_151692, intron 1 of 7)	CpG	136.0	NR_151692	110119.0	Mm.247218	NM_025837	ENSMUSG00000032306	Mpi	1110002E17Rik|AI315153|Mpi-1|Mpi1	mannose phosphate isomerase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-86778786-7	chr10	86778685	86778885	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175331)	promoter-TSS (NM_175331)	-220.0	NM_175331	103466.0	Mm.200446	NM_175331	ENSMUSG00000054027	Nt5dc3	AU040402|AW540062|C630002B14Rik|TU12B1-TY	5'-nucleotidase domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-113548139-4	chr13	113548028	113548228	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45284.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-25186261-2	chr19	25186161	25186361	+	548.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028785, intron 43 of 47)	intron (NM_028785, intron 43 of 47)	-50714.0	NM_181404	107351.0	Mm.260722	NM_181404	ENSMUSG00000032702	Kank1	A930031B09Rik|AU015049|AW121052|Ankrd15|D330024H06Rik|mKIAA0172	KN motif and ankyrin repeat domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-31105336-4	chr7	31105280	31105480	+	952.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110252, intron 5 of 13)	intron (NM_001110252, intron 5 of 13)	5617.0	NM_001276269	15451.0	Mm.19182	NM_008281	ENSMUSG00000001249	Hpn	Hlb320	hepsin	protein-coding	3.72721842487706	2.72691073351716	3.51062468281513	3.48878455332931	3.65144859331747	4.00302623759534	3.06075482756254	2.71190294110066	0.0476252043393375	0.936588000705622	0.998431161219273
Merged-chr9-44083975-3	chr9	44083867	44084067	+	879.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198091)	promoter-TSS (NM_198091)	-953.0	NM_198091	53376.0	Mm.272770	NM_016808	ENSMUSG00000032010	Usp2	B930035K21Rik|Ubp41	ubiquitin specific peptidase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-40727713-2	chr19	40727613	40727813	+	789.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001304721, intron 7 of 9)	intron (NM_001304721, intron 7 of 9)	67943.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-40351195-2	chr10	40351095	40351295	+	681.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291816, intron 1 of 11)	intron (NM_001291816, intron 1 of 11)	1887.0	NM_001291816	78334.0	Mm.200924	NM_198164	ENSMUSG00000038481	Cdk19	2700084L06Rik|AI845279|AW228747|CDK11|Cdc2l6|mKIAA1028	cyclin-dependent kinase 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-36323918-4	chr15	36323795	36323995	+	835.966675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40748.0	NM_001357631	30945.0	Mm.5181	NM_013923	ENSMUSG00000022280	Rnf19a	AA032313|Dorfin|Rnf19|UIP117|Ubce7ip2|XYbp	ring finger protein 19A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-41000291-5	chr13	41000155	41000355	+	864.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026550)	promoter-TSS (NM_026550)	-755.0	NM_026550	68083.0	Mm.24789	NM_026550	ENSMUSG00000038683	Pak1ip1	5830431I15Rik|5930415H02Rik|AA419825|AI314040|AW556169|Gdpd1|PIP1	PAK1 interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-8565219-1	chr11	8565119	8565319	+	680.0	f1_c57bl6.idr	intron (NM_001083587, intron 4 of 30)	intron (NM_001083587, intron 4 of 30)	99316.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	1.40095148266163	1.394488564924	1.33852921526206	1.3985852737864	0.859039838862975	0.729489506345506	0.91814000925372	0.708179088929836	-3.21731055529256	0.0345890507983904	0.262990767730728
Merged-chr7-140943380-2	chr7	140943280	140943480	+	715.333374	f1_balb.idr|f1_c57bl6.idr	exon (NM_145387, exon 4 of 14)	exon (NM_145387, exon 4 of 14)	1989.0	NM_145387	212974.0	Mm.260139	NM_145387	ENSMUSG00000062031	Pgghg	5730511L01Rik|Athl1|BC023151	protein glucosylgalactosylhydroxylysine glucosidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127607694-2	chr10	127607594	127607794	+	811.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 4 of 88)	PB1D7|SINE|Alu	13454.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	0.878958556506604	1.28913543152768	1.53452375352133	0.585122371499385	0.887067851083483	0.607475229639977	1.24528618159789	0.586650797393865	-1.18587366667634	0.448747379921684	0.915206885694556
Merged-chr16-91646372-2	chr16	91646272	91646472	+	614.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010256, intron 1 of 21)	intron (NM_010256, intron 1 of 21)	600.0	NM_010256	14450.0	Mm.4505	NM_010256	ENSMUSG00000022962	Gart	Gaps|Prgs	phosphoribosylglycinamide formyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-37956365-4	chr18	37956192	37956392	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153793, intron 1 of 7)	intron (NM_153793, intron 1 of 7)	733.0	NM_153793	225392.0	Mm.233516	NM_153793	ENSMUSG00000044024	Rell2	4631403P03Rik|ependolin	RELT-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25776925-4	chr7	25776847	25777047	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009465, intron 6 of 19)	intron (NM_009465, intron 6 of 19)	11786.0	NM_001190974	26362.0	Mm.4128	NM_009465	ENSMUSG00000002602	Axl	AI323647|Ark|Tyro7|Ufo	AXL receptor tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-105567106-4	chr5	105566993	105567193	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133897, intron 2 of 3)	intron (NM_133897, intron 2 of 3)	47622.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-42907553-4	chr16	42907461	42907661	+	861.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285805)	promoter-TSS (NM_001285805)	-84.0	NM_001285805	56490.0	Mm.136238	NM_019778	ENSMUSG00000022708	Zbtb20	1300017A20Rik|7330412A13Rik|A930017C21Rik|D16Wsu73e|DPZF|HOF|J20|ODA-8S|Oda8|Tg(PDGFB-APPSwInd)20Lms|Zfp288	zinc finger and BTB domain containing 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-45045379-2	chr2	45045279	45045479	+	572.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355291, intron 2 of 9)	intron (NM_001355291, intron 2 of 9)	-22202.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-11014017-2	chr16	11013917	11014117	+	769.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040518, exon 3 of 3)	non-coding (NR_040518, exon 3 of 3)	5119.0	NR_040518	100043147.0	Mm.489001	NR_040518	ENSMUSG00000097056	Gm4262	-	predicted gene 4262	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80011683-4	chr7	80011563	80011763	+	954.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-13151.0	NM_001145999	209225.0	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-25414632-7	chr15	25414525	25414725	+	988.517883	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027395)	promoter-TSS (NM_027395)	433.0	NR_027376	432939.0	Mm.146555	NM_001013791		Gm5468	100040583|EG432939	predicted gene 5468	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41340454-2	chr19	41340354	41340554	+	905.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 2 of 16)	(CAAT)n|Simple_repeat|Simple_repeat	44616.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70874484-2	chr8	70874384	70874584	+	781.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026964)	promoter-TSS (NM_026964)	-994.0	NM_026964	234388.0	Mm.295791	NM_026964	ENSMUSG00000007721	Ccdc124	1810023B24Rik	coiled-coil domain containing 124	protein-coding	-0.882500737250988	-0.871383595929342	-0.877264642821644	-0.593370628828135	-0.522994489046908	-0.868834852376018	-0.876698067230442	-0.722418109689754	0.796428778447833	0.785013759926665	1
Merged-chr15-81960276-4	chr15	81960137	81960337	+	890.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001282041, intron 1 of 5)	intron (NM_001282041, intron 1 of 5)	693.0	NM_001282040	29858.0	Mm.18939	NM_013872	ENSMUSG00000022474	Pmm1	C77612	phosphomannomutase 1	protein-coding	-1.50874880059862	-1.47511716453926	-1.4852876488768	-1.49364198752927	-1.50638792193216	-0.992828729615453	-1.48298527415345	-1.4921465649048	2.3185461113984	0.50391666537493	1
Merged-chr15-79741386-4	chr15	79741288	79741488	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194342, intron 1 of 16)	intron (NM_194342, intron 1 of 16)	1148.0	NM_194342	223697.0	Mm.202715	NM_194342	ENSMUSG00000042524	Sun2	B230369L08Rik|C030011B15|Unc84b	Sad1 and UNC84 domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-40555246-4	chr12	40555158	40555358	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	109205.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-81308397-2	chr7	81308297	81308497	+	775.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008803, intron 9 of 21)	B1_Mus1|SINE|Alu	36837.0	NM_009092	20068.0	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141951598-2	chr4	141951498	141951698	+	623.583374	f1_balb.idr|f1_c57bl6.idr	exon (NM_177868, exon 13 of 32)	exon (NM_177868, exon 13 of 32)	-31394.0	NR_040672	545691.0	Mm.332015	NR_040672	ENSMUSG00000085424	Fhad1os1	Gm13037	forkhead-associated (FHA) phosphopeptide binding domain 1, opposite strand 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-18287136-2	chr5	18287036	18287236	+	622.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010305, intron 5 of 7)	intron (NM_010305, intron 5 of 7)	73277.0	NM_010305	14677.0	Mm.254629	NM_010305	ENSMUSG00000057614	Gnai1	AU046200|Gialpha1|Gnai-1	guanine nucleotide binding protein (G protein), alpha inhibiting 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-9389427-4	chr14	9389334	9389534	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-494661.0	NR_030680	100042415.0	Mm.235938	NR_030680	ENSMUSG00000089686	Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114883430-2	chr11	114883330	114883530	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6611.0	NM_001347654	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-73747529-2	chr15	73747429	73747629	+	698.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008975)	promoter-TSS (NM_008975)	-497.0	NM_008975	19245.0	Mm.390807	NM_008975	ENSMUSG00000059895	Ptp4a3	AV088979|Prl-3|pPtp4a3	protein tyrosine phosphatase 4a3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129309216-4	chr2	129309111	129309311	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010554, intron 1 of 6)	intron (NM_010554, intron 1 of 6)	761.0	NM_010554	16175.0	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	2.0425014482666	2.00246271341346	2.20938255411119	2.25831910451582	2.05880004774201	1.63165397785941	2.78027899486546	2.03649873276147	0.188750257931027	0.833704533233792	0.998431161219273
Merged-chr13-49224868-2	chr13	49224768	49224968	+	647.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR26_Mus|LTR|ERVK	-8842.0	NM_026738	68480.0	Mm.3336	NM_026738	ENSMUSG00000037960	Card19	1110007C09Rik|AI851695|Bincard	caspase recruitment domain family, member 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-83705030-1	chr17	83704930	83705130	+	544.0	f1_balb.idr	Intergenic	PB1D7|SINE|Alu	-1133.0	NM_001171054	116871.0	Mm.277668	NM_054082	ENSMUSG00000055817	Mta3	1110002J22Rik|mKIAA1266	metastasis associated 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-3004775-4	chr9	3004636	3004836	+	844.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GSAT_MM|Satellite|Satellite	34007.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-59976565-4	chr2	59976437	59976637	+	856.2666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001182, intron 6 of 35)	intron (NM_001001182, intron 6 of 35)	-93931.0	NM_028118	72137.0	Mm.288734	NM_028118	ENSMUSG00000026988	Wdsub1	1700048E19Rik|2610014F08Rik	WD repeat, SAM and U-box domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-98308901-2	chr7	98308801	98309001	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360615, intron 1 of 10)	intron (NM_001360615, intron 1 of 10)	641.0	NM_001360616	66190.0	Mm.334041	NM_025408	ENSMUSG00000030760	Acer3	1110057L18Rik|5430429L08Rik|AV015045|Phca|aPHC	alkaline ceramidase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-116976549-2	chr2	116976449	116976649	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	76397.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-98809234-3	chr13	98809137	98809337	+	832.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172591, intron 1 of 25)	B2_Mm2|SINE|B2	6212.0	NM_172591	218503.0	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-26251505-2	chr7	26251405	26251605	+	930.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13B1|LTR|ERVK	-15326.0	NM_001167540	100312477.0	Mm.480246	NM_001167540	ENSMUSG00000046130	Vmn1r184	-	vomeronasal 1 receptor, 184	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55901822-3	chr19	55901718	55901918	+	830.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142924, intron 1 of 11)	intron (NM_001142924, intron 1 of 11)	6497.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19878726-2	chr7	19878626	19878826	+	747.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_177036, intron 6 of 6)	intron (NM_177036, intron 6 of 6)	9239.0	NM_177036	319930.0	Mm.215839	NM_177036	ENSMUSG00000049848	Ceacam19	C130022P09Rik|CEAL1	carcinoembryonic antigen-related cell adhesion molecule 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118692185-2	chr9	118692085	118692285	+	879.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 14 of 27)	intron (NM_133721, intron 14 of 27)	-19507.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-97753144-2	chr4	97753044	97753244	+	594.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001122952, intron 1 of 10)	intron (NM_001122952, intron 1 of 10)	-24482.0	NM_001122953	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-79229563-4	chr3	79229471	79229671	+	952.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045502, intron 1 of 2)	intron (NR_045502, intron 1 of 2)	16652.0	NR_045502	70924.0	Mm.444622	NR_045502	ENSMUSG00000104585	4921511C10Rik	-	RIKEN cDNA 4921511C10 gene	ncRNA	3.34453093120302	3.08963985337853	2.05892373731086	2.70975108649394	3.14503053897977	2.90622698719293	2.07482967253994	2.7237260964273	-0.220008059281666	0.766881052653407	0.998431161219273
Merged-chr11-31784463-3	chr11	31784384	31784584	+	842.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	40063.0	NR_102310	414116.0	Mm.150222	NR_102310	ENSMUSG00000085772	D630024D03Rik	-	RIKEN cDNA D630024D03 gene	ncRNA	2.54841323770708	2.8508461972057	2.55108253355161	2.23581854419735	2.6536638952882	1.82809137356515	2.57055157174317	2.86578216908059	-0.0401913790123936	0.958916245824431	0.998431161219273
Merged-chr2-150789539-1	chr2	150789439	150789639	+	1000.0	f0_balb.idr	intron (NM_153781, intron 1 of 19)	intron (NM_153781, intron 1 of 19)	2743.0	NM_153781	110078.0	Mm.222584	NM_153781	ENSMUSG00000033059	Pygb	-	brain glycogen phosphorylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35917779-7	chr17	35917616	35917816	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_035445)	promoter-TSS (NR_035445)	-173.0	NR_035445	100316810.0		NR_035445	ENSMUSG00000084751	Mir1894	Mirn1894|mmu-mir-1894	microRNA 1894	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-34899249-2	chr2	34899149	34899349	+	662.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028716, intron 11 of 14)	intron (NM_028716, intron 11 of 14)	14727.0	NM_028716	74016.0	Mm.65691	NM_028716	ENSMUSG00000026873	Phf19	3110009G19Rik|3321402G02Rik	PHD finger protein 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-42513401-4	chr18	42513307	42513507	+	997.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360881, intron 1 of 20)	intron (NM_001360881, intron 1 of 20)	1920.0	NR_110344	56070.0	Mm.270511	NM_001039474	ENSMUSG00000024498	Tcerg1	2410022J09Rik|2900090C16Rik|AI428505|CA150b|FBP23|FBP28|Taf2s|ca150|p144	transcription elongation regulator 1 (CA150)	protein-coding	-1.50561175621786	-1.47331375025452	-1.02203377115094	-1.49110398925286	-1.50334449591826	-1.47119716082604	-1.48086985756939	-1.48966786617048	-2.07776723614574	0.550394407909386	1
Merged-chr8-104359759-2	chr8	104359659	104359859	+	984.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153582, intron 1 of 3)	intron (NM_153582, intron 1 of 3)	19165.0	NM_024217	68119.0	Mm.390108	NM_024217	ENSMUSG00000031875	Cmtm3	9430096L06Rik|AI413895|BNAS2|Cklfsf3	CKLF-like MARVEL transmembrane domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-5501231-1	chr11	5501131	5501331	+	973.0	f1_balb.idr	Intergenic	Intergenic	-19410.0	NM_013842	22433.0	Mm.469937	NM_013842	ENSMUSG00000020484	Xbp1	D11Ertd39e|TREB-5|TREB5|XBP-1	X-box binding protein 1	protein-coding	0.541339207305259	-0.134289306027254	-0.140302130466747	-0.144967894264353	0.77557487909297	-0.132939170748913	-0.138972648553497	-0.144151079333197	0.614555284146229	0.801970852914689	1
Merged-chr2-52420162-3	chr2	52420046	52420246	+	689.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_182994, intron 1 of 5)	intron (NM_182994, intron 1 of 5)	4728.0	NM_182994	75423.0	Mm.314378	NM_182994	ENSMUSG00000036093	Arl5a	2410015N24Rik|2810410P22Rik|AA408731|AW610751|Arl5|T25534	ADP-ribosylation factor-like 5A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-21934111-2	chr13	21934011	21934211	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10983.0	NM_183014	193452.0	Mm.187446	NM_183014	ENSMUSG00000006720	Zfp184	4930500C15Rik	zinc finger protein 184 (Kruppel-like)	protein-coding	-2.18138529563533	-2.15523716995652	-2.1631445789866	-2.16963996020037	-2.05513010215571	-2.15352360143315	-2.16135451490766	-2.16847729006863	0.759018020146679	0.829933115115583	1
Merged-chr17-17374179-4	chr17	17374061	17374261	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025934)	promoter-TSS (NM_025934)	-171.0	NM_025934	67045.0	Mm.35117	NM_025934	ENSMUSG00000023852	Riok2	2010110K24Rik|2410085M17Rik	RIO kinase 2	protein-coding	6.53547338817883	6.56466545866841	6.09498795054372	6.43431769476083	6.36654270246128	5.88855407937036	6.24676679223302	6.37303365367055	-0.196864099964435	0.362144661808598	0.8580597646541
Merged-chr11-94161442-4	chr11	94161352	94161552	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50002.0	NM_009427	22057.0	Mm.259673	NM_009427	ENSMUSG00000037573	Tob1	Tob|Trob	transducer of ErbB-2.1	protein-coding	2.5992381647817	3.15345476554116	3.51775894968487	1.48733310141936	3.5521070466751	2.35882925699701	2.44723430835883	3.72232737294569	0.476266993811799	0.550652624330301	0.958886819552243
Merged-chr2-152081975-4	chr2	152081864	152082064	+	972.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001160410, exon 1 of 2)	5' UTR (NM_001160410, exon 1 of 2)	435.0	NM_001160410	545474.0	Mm.214317	NM_001160410	ENSMUSG00000060257	Scrt2	AW060659	scratch family zinc finger 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80250410-3	chr7	80250313	80250513	+	779.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177765, intron 4 of 14)	intron (NM_177765, intron 4 of 14)	4037.0	NM_177765	269954.0	Mm.276780	NM_177765	ENSMUSG00000045467	Ttll13	1700111A04Rik|4921538O11|BC024578	tubulin tyrosine ligase-like family, member 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-82871598-4	chr9	82871511	82871711	+	859.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081216, exon 40 of 40)	exon (NM_001081216, exon 40 of 40)	41805.0	NM_001168240	65099.0	Mm.41415	NM_022986	ENSMUSG00000032251	Irak1bp1	4921528N06Rik|AI851240|Aabp3|Aip70|Simpl	interleukin-1 receptor-associated kinase 1 binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-30600374-3	chr3	30600270	30600470	+	724.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029690)	promoter-TSS (NM_029690)	-500.0	NM_029690	76652.0	Mm.116928	NM_029690	ENSMUSG00000037737	Actrt3	1700119I24Rik|ARP-T3|Arpm1	actin related protein T3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-83150970-2	chr15	83150825	83151025	+	691.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	1280.0	NR_004432	104307.0	Mm.471434	NR_004432	ENSMUSG00000065176	Rnu12	-	RNA U12, small nuclear	snRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-128032518-2	chr6	128032416	128032616	+	646.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356301, intron 2 of 7)	intron (NM_001356301, intron 2 of 7)	111062.0	NM_175414	109246.0	Mm.21814	NM_175414	ENSMUSG00000030352	Tspan9	6720474K14Rik|9430079M16Rik|AU018597|Tspan-9	tetraspanin 9	protein-coding	1.03153283813036	1.13605867946376	0.342791244496882	0.335958615365799	0.491184882501651	1.03309275146937	0.344734543226074	0.337156234624288	-0.941741955879325	0.610450232617895	1
Merged-chr16-21652868-4	chr16	21652801	21653001	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001001881, exon 2 of 2)	3' UTR (NM_001001881, exon 2 of 2)	41764.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-58286949-4	chr2	58286845	58287045	+	886.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_040365)	TTS (NR_040365)	10166.0	NR_040365	100502932.0	Mm.417207	NR_040365	ENSMUSG00000086995	Gm13544	-	predicted gene 13544	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123915306-2	chr5	123915206	123915406	+	941.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_026603, intron 3 of 7)	intron (NM_026603, intron 3 of 7)	8031.0	NM_026603	68184.0	Mm.28549	NM_026603	ENSMUSG00000023106	Denr	1500003K04Rik	density-regulated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-178329220-4	chr1	178329110	178329310	+	820.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_016805, exon 14 of 14)	3' UTR (NM_016805, exon 14 of 14)	8605.0	NM_016805	51810.0	Mm.86589	NM_016805	ENSMUSG00000039630	Hnrnpu	AA408410|AI256620|AL024194|AL024437|AW557595|C86794|Hnrpu|SAFA|Sp120|hnRNP U	heterogeneous nuclear ribonucleoprotein U	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167921689-2	chr2	167921589	167921789	+	982.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10638.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-34765074-4	chr8	34764970	34765170	+	934.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42540.0	NM_176933	319520.0	Mm.170276	NM_176933	ENSMUSG00000031530	Dusp4	2700078F24Rik|AI844617|BB104621|E130306H24Rik|MKP2	dual specificity phosphatase 4	protein-coding	1.56201393142166	2.40700037211885	2.22274633876467	1.63527571550111	1.84832167317125	1.91704220825643	2.52202110444121	1.64274611539636	0.0569893253836632	0.952931963521699	0.998431161219273
Merged-chr4-135494610-4	chr4	135494491	135494691	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028995)	promoter-TSS (NM_028995)	-13.0	NM_028995	74552.0	Mm.26548	NM_028995	ENSMUSG00000028803	Nipal3	9130020G22Rik|AI480660|Npal3	NIPA-like domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80947747-4	chr7	80947630	80947830	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019951)	promoter-TSS (NM_019951)	-180.0	NM_019951	56529.0	Mm.43760	NM_019951	ENSMUSG00000025724	Sec11a	1810012E07Rik|18kDa|Sec11l1|Sid2895p|Spc18|sid2895	SEC11 homolog A, signal peptidase complex subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101465963-3	chr7	101465852	101466052	+	950.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152192, intron 3 of 31)	intron (NR_152192, intron 3 of 31)	-9424.0	NR_029791	387157.0		NR_029791	ENSMUSG00000065446	Mir139	Mirn139|mir-139|mmu-mir-139	microRNA 139	ncRNA	-0.691004228274267	-0.677459441291142	-0.481014626565841	-0.685284772283162	-0.690150066990583	-0.676470674941957	0.263994404455853	-0.68468594228947	2.66047897631863	0.337444858956106	1
Merged-chr11-97696110-2	chr11	97696010	97696210	+	586.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163308, intron 1 of 9)	intron (NM_001163308, intron 1 of 9)	3274.0	NM_001163307	22658.0	Mm.2418	NM_009545	ENSMUSG00000018537	Pcgf2	Mel18|Rnf110|Zfp144|mel-18	polycomb group ring finger 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-147071237-1	chr5	147071137	147071337	+	721.666687	f0_balb.idr	intron (NM_080795, intron 1 of 9)	intron (NM_080795, intron 1 of 9)	5335.0	NM_080795	140887.0	Mm.272203	NM_080795	ENSMUSG00000016520	Lnx2	9630046H24|AW209022	ligand of numb-protein X 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180175264-2	chr1	180175164	180175364	+	637.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359269, intron 3 of 13)	intron (NM_001359269, intron 3 of 13)	18221.0	NM_001163290	67426.0	Mm.38330	NM_023341	ENSMUSG00000026489	Coq8a	4632432J16Rik|AI462003|Adck3|Cabc1|mKIAA0451	coenzyme Q8A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-56058560-1	chr12	56058460	56058660	+	591.0	f1_balb.idr	Intergenic	Intergenic	-194683.0	NR_045048	100503961.0	Mm.136732	NR_045048	ENSMUSG00000112164	Gm19990	-	predicted gene, 19990	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-44828521-4	chr18	44828424	44828624	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163013)	promoter-TSS (NM_001163013)	-141.0	NM_001163013	240255.0	Mm.244482	NM_001163013	ENSMUSG00000034653	Ythdc2	3010002F02Rik|BC037178	YTH domain containing 2	protein-coding	2.74276045392045	2.53888846730611	1.48692013319803	2.24710293938888	2.9130652890565	3.00763690485924	3.15238174001236	2.39518468809535	1.1066833246688	0.164415234557883	0.627932209944809
Merged-chr15-96566986-4	chr15	96566847	96567047	+	915.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	75015.0	NM_134086	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-55417536-2	chr13	55417436	55417636	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_021489)	TTS (NM_021489)	-2304.0	NM_029303	75477.0	Mm.432537	NM_029303	ENSMUSG00000044444	Pfn3	1700012P12Rik	profilin 3	protein-coding	0.634829353775725	0.361889905924964	0.352962433093145	1.22124934486785	0.642493838286684	0.3638897614871	0.354939418034556	1.23113667373744	0.0312133283981148	0.986334423595453	1
Merged-chr2-52937192-2	chr2	52937092	52937292	+	999.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	79324.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-13336553-3	chr1	13336457	13336657	+	730.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008678, intron 1 of 22)	intron (NM_008678, intron 1 of 22)	35872.0	NM_001302702	17978.0	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-122561651-2	chr6	122561551	122561751	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009645, intron 3 of 4)	intron (NM_009645, intron 3 of 4)	7842.0	NM_009645	11628.0	Mm.391503	NM_009645	ENSMUSG00000040627	Aicda	Aid|Arp2	activation-induced cytidine deaminase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-98602014-4	chr7	98601977	98602177	+	745.049988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172280, intron 15 of 19)	intron (NM_172280, intron 15 of 19)	54492.0	NM_172280	233545.0	Mm.387819	NM_172280	ENSMUSG00000035401	Emsy	2210018M11Rik|2310016L09Rik|AU019521|AU019557	EMSY, BRCA2-interacting transcriptional repressor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-160653149-1	chr2	160653049	160653249	+	546.0	f0_balb.idr	intron (NM_009408, intron 2 of 20)	intron (NM_009408, intron 2 of 20)	7252.0	NM_009408	21969.0	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-96462952-2	chr15	96462852	96463052	+	688.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2109.0	NM_028148	72193.0	Mm.324474	NM_028148	ENSMUSG00000033228	Scaf11	1110061H03Rik|2610510E10Rik|AI462454|CASP11|SIP1|SRRP129|Sfrs2ip|Srsf2ip|mKIAA3013	SR-related CTD-associated factor 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117776509-2	chr11	117776409	117776609	+	578.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145439, intron 5 of 19)	intron (NM_145439, intron 5 of 19)	3139.0	NR_154387	217353.0	Mm.286963	NM_145439	ENSMUSG00000025572	Tmc6	D11Ertd204e|EVER1	transmembrane channel-like gene family 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-23961604-2	chr19	23961495	23961695	+	699.083374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	69424.0	NM_001114174	381217.0	Mm.426078	NM_001114174	ENSMUSG00000071604	Fam189a2	AI414343|AI666772|Gm967	family with sequence similarity 189, member A2	protein-coding	1.32140321547092	1.96355768932905	2.02055512102871	2.0694780360314	2.30468137689574	2.10857872634896	1.18077735350825	1.71823987752227	0.0809647379761022	0.939243990672676	0.998431161219273
Merged-chr17-24738475-1	chr17	24738375	24738575	+	556.0	f1_balb.idr	intron (NM_013759, intron 1 of 4)	B1_Mus1|SINE|Alu	1882.0	NM_001346668	27361.0	Mm.28212	NM_013759	ENSMUSG00000075705	Msrb1	D17Wsu82e|SELX|SelR|Sepr|Sepx1	methionine sulfoxide reductase B1	protein-coding	1.06127897264016	0.552460896726339	1.48587651251126	0.533134893244846	1.07296127434503	0.554886375689386	1.3083296472589	0.534622519716	-0.275484769416065	0.87092103661886	0.998431161219273
Merged-chr10-130247233-3	chr10	130247121	130247321	+	851.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	32917.0	NM_001329489	11923.0	Mm.10695	NM_007501	ENSMUSG00000048015	Neurod4	AI846749|ATH-3|Atoh3|MATH-3|Math3|bHLHa4	neurogenic differentiation 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-168225431-2	chr2	168225331	168225531	+	707.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_132310, intron 2 of 11)	intron (NR_132310, intron 2 of 11)	4948.0	NM_010072	13480.0	Mm.422657	NM_010072	ENSMUSG00000078919	Dpm1	AI118379|AI194292	dolichol-phosphate (beta-D) mannosyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166448931-4	chr2	166448806	166449006	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015558, intron 1 of 2)	intron (NR_015558, intron 1 of 2)	1455.0	NR_015558	319684.0	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-83572151-4	chr13	83572044	83572244	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347566, intron 1 of 10)	intron (NM_001347566, intron 1 of 10)	-1463.0	NM_001347577	17260.0	Mm.24001	NM_025282	ENSMUSG00000005583	Mef2c	5430401D19Rik|9930028G15Rik|AV011172|Mef2	myocyte enhancer factor 2C	protein-coding	4.86776094630074	5.17123339213428	5.35073893035683	5.43892986038687	4.80404067803821	4.31784751987592	5.6775400561987	4.79374367254242	-0.269481382723815	0.446786675292427	0.914456931108586
Merged-chr11-109361773-8	chr11	109361681	109361881	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038097, intron 1 of 1)	intron (NR_038097, intron 1 of 1)	-1013.0	NM_010303	14674.0	Mm.193925	NM_010303	ENSMUSG00000020611	Gna13	AU024132|AU043124|Galpha13	guanine nucleotide binding protein, alpha 13	protein-coding	4.74305876107302	5.06187582974369	5.52726640297152	4.97306462564711	4.88120157819418	5.25294340393013	5.17117449222548	5.34059011081496	0.0783406717697482	0.804222281025499	0.998431161219273
Merged-chr16-51985674-4	chr16	51985572	51985772	+	909.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_153657, exon 2 of 5)	non-coding (NR_153657, exon 2 of 5)	1615.0	NR_153657	629091.0	Mm.364775	NR_153657		Gm29686	-	predicted gene, 29686	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-130925882-2	chr4	130925782	130925982	+	545.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010686, intron 1 of 7)	MIR|SINE|MIR	12548.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-5102522-3	chr6	5102423	5102623	+	858.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181595, intron 7 of 15)	intron (NM_181595, intron 7 of 15)	91423.0	NM_011134	18979.0	Mm.237657	NM_011134	ENSMUSG00000002588	Pon1	Pon	paraoxonase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-89942223-3	chr1	89942123	89942323	+	832.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11047.0	NM_010262	14472.0	Mm.204730	NM_010262	ENSMUSG00000034486	Gbx2	D130058E05Rik|Gbx-2|MMoxA|Stra7	gastrulation brain homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-73049130-4	chr14	73049025	73049225	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133720)	promoter-TSS (NM_133720)	-11.0	NM_001162412	70086.0	Mm.158324	NM_133720	ENSMUSG00000033470	Cysltr2	2300001H05Rik|CYSLT2R|Cltr2|Cyslt2	cysteinyl leukotriene receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-30062786-3	chr16	30062709	30062909	+	813.93335	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2548.0	NM_008235	15205.0	Mm.390859	NM_008235	ENSMUSG00000022528	Hes1	Hry|bHLHb39	hes family bHLH transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-72987863-3	chr9	72987759	72987959	+	912.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359295, intron 1 of 9)	intron (NM_001359295, intron 1 of 9)	2355.0	NM_001286544	72278.0	Mm.268475	NM_028181	ENSMUSG00000034563	Ccpg1	1700030B06Rik|1810073J13Rik|9430028F23Rik|AI426686|AI875170|CPR8|D9Ertd392e	cell cycle progression 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120365078-2	chr8	120364978	120365178	+	630.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-123788.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36559886-4	chr18	36559804	36560004	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175375)	promoter-TSS (NM_175375)	-699.0	NM_175375	108857.0	Mm.482287	NM_175375	ENSMUSG00000024483	Ankhd1	1110004O12Rik|4933432B13Rik|9130019P20Rik|A530027J04Rik|A630021B20Rik|AA571404|Mask|mFLJ00246|mKIAA1085	ankyrin repeat and KH domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-19709726-2	chr8	19709626	19709826	+	688.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19850.0	NM_001270553	100861668.0	Mm.491087	NM_001270553	ENSMUSG00000095294	Gm21119	-	predicted gene, 21119	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-36941362-4	chr16	36941260	36941460	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008225, intron 3 of 13)	intron (NM_008225, intron 3 of 13)	6377.0	NM_008225	15163.0	Mm.4091	NM_008225	ENSMUSG00000022831	Hcls1	AW213261|HS1	hematopoietic cell specific Lyn substrate 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-164946339-2	chr2	164946239	164946439	+	616.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-1880.0	NM_013599	17395.0	Mm.4406	NM_013599	ENSMUSG00000017737	Mmp9	AW743869|B/MMP9|Clg4b|Gel B|MMP-9|pro-MMP-9	matrix metallopeptidase 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70765406-1	chr14	70765306	70765506	+	559.0	f1_c57bl6.idr	intron (NM_023045, intron 1 of 27)	intron (NM_023045, intron 1 of 27)	1222.0	NM_023045	65246.0	Mm.152987	NM_023045	ENSMUSG00000022100	Xpo7	4930506C02Rik|BB164534|Ranbp16|exp7	exportin 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-136034679-2	chr4	136034564	136034764	+	603.0	f0_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13015.0	NM_013736	27224.0	Mm.27663	NM_013736	ENSMUSG00000028668	Eloa	110kDa|AA408125|Tceb3|Tceb3a	elongin A	protein-coding	2.30917515649422	1.3543837564691	1.31313031163244	2.37052588555449	2.25962966529828	1.0970373723684	2.09522547302352	1.04991909462332	-0.476758322598184	0.689220766357878	0.996533206832645
Merged-chr18-61105066-2	chr18	61104966	61105166	+	733.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001037859)	promoter-TSS (NM_001037859)	-506.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-90777780-4	chr5	90777670	90777870	+	927.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5335.0	NM_019932	56744.0	Mm.332490	NM_019932	ENSMUSG00000029373	Pf4	Cxcl4|Scyb4	platelet factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-152040047-2	chr4	152039947	152040147	+	977.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_131076, intron 1 of 10)	MIR|SINE|MIR	726.0	NM_028727	74035.0	Mm.275803	NM_028727	ENSMUSG00000028948	Nol9	4632412I24Rik|6030462G04Rik|AI449622|AW490720	nucleolar protein 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-38439362-2	chr3	38439262	38439462	+	709.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45454.0	NM_001167883	99696.0	Mm.290937	NM_001033198	ENSMUSG00000044864	Ankrd50	AI662170|E430012K20Rik|mKIAA1223|mKIAA3019	ankyrin repeat domain 50	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141407062-3	chr4	141406963	141407163	+	877.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019701, intron 16 of 19)	intron (NM_019701, intron 16 of 19)	-8357.0	NM_024412	12733.0	Mm.167900	NM_024412	ENSMUSG00000033770	Clcnka	C75963|CLC-K1|Clcnk1	chloride channel, voltage-sensitive Ka	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-118302152-4	chr12	118302075	118302275	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009239)	promoter-TSS (NM_009239)	-735.0	NM_001166385	20688.0	Mm.34699	NM_009239	ENSMUSG00000025323	Sp4	5730497N03Rik|HF-1b|HF1-b	trans-acting transcription factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167538038-4	chr2	167537958	167538158	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011427)	promoter-TSS (NM_011427)	-137.0	NM_011427	20613.0	Mm.2093	NM_011427	ENSMUSG00000042821	Snai1	Sna|Sna1|Snail|Snail1	snail family zinc finger 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-92641136-1	chr7	92641036	92641236	+	577.0	f0_balb.idr	Intergenic	RSINE1|SINE|B4	-3994.0	NM_028665	73845.0	Mm.73248	NM_028665	ENSMUSG00000041343	Ankrd42	4931426M20|4933417L02Rik|Ikbn	ankyrin repeat domain 42	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3393749-2	chr4	3393649	3393849	+	925.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus4|LINE|L1	-143341.0	NR_037306	100499523.0		NR_037306	ENSMUSG00000094253	Mir3471-2	mmu-mir-3471-2	microRNA 3471-2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-48504359-4	chr6	48504252	48504452	+	975.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015597)	promoter-TSS (NR_015597)	13.0	NR_027808	58894.0	Mm.31983	NR_015597	ENSMUSG00000107476	Zfp862-ps	4732460K03Rik|AI448302|Zfp862|mKIAA0543	zinc finger protein 862, pseudogene	pseudo	4.58424509128839	3.66901575312745	3.44424693946435	4.42706254410185	3.96949777870711	3.95818932667748	4.48356357239667	3.63195538290947	-0.116422916689739	0.808360370898708	0.998431161219273
Merged-chr14-31422205-2	chr14	31422105	31422305	+	676.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_011894, intron 2 of 8)	intron (NM_011894, intron 2 of 8)	-4528.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-25148218-2	chr12	25148138	25148338	+	662.0	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	19064.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	1.89921032871562	1.57306111650624	2.1665141135634	1.604358308178	0.889103484159712	1.86611556184229	0.932190095354848	0.914805196245585	-2.025221905208	0.120477670359026	0.544833604198046
Merged-chr1-117250373-2	chr1	117250279	117250479	+	707.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3A|LINE|L1	1060349.0	NR_153836	22099.0	Mm.426637	NM_011650	ENSMUSG00000026374	Tsn	2610034C24Rik|AU040286|C3PO|TB-RBP	translin	protein-coding	-2.05752322593321	-2.15521190974092	-2.16307242109104	-2.16952927915413	-2.17938029103484	-2.15350850414045	-2.16129297361887	-2.16837350464794	-0.683654500252594	0.846597994014493	1
Merged-chr9-57428768-2	chr9	57428668	57428868	+	685.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_152145, intron 3 of 6)	intron (NR_152145, intron 3 of 6)	10968.0	NM_001357913	66812.0	Mm.250508	NM_176831	ENSMUSG00000063849	Ppcdc	1810057I13Rik|8430432M10Rik	phosphopantothenoylcysteine decarboxylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-122301322-2	chr2	122301222	122301422	+	596.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_025777, exon 4 of 6)	exon (NM_025777, exon 4 of 6)	2422.0	NM_025777	66811.0	Mm.171333	NM_025777	ENSMUSG00000027225	Duoxa2	9030623N16Rik|Nip2	dual oxidase maturation factor 2	protein-coding	-0.177733621508433	-0.805752184127899	-0.808838537208662	-0.811215655782965	-0.543043920694761	-0.803068160812789	-0.808158328395888	-0.810800640862464	-1.36685470224649	0.652602213394196	1
Merged-chr7-127588234-4	chr7	127588113	127588313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172281)	promoter-TSS (NM_172281)	382.0	NM_001033040	233899.0	Mm.25220	NM_001033040	ENSMUSG00000057176	Ccdc189	Gm166	coiled-coil domain containing 189	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95955849-2	chr3	95955749	95955949	+	636.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26592.0	NM_023210	66471.0	Mm.218657	NM_023210	ENSMUSG00000015749	Anp32e	2810018A15Rik|AI047746|AI326868|CPD1|LANP-L|LANPL|mLANP-L	acidic (leucine-rich) nuclear phosphoprotein 32 family, member E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70791780-4	chr11	70791672	70791872	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045526, intron 4 of 4)	intron (NM_001045526, intron 4 of 4)	20789.0	NM_001045526	327957.0	Mm.164325	NM_001045526	ENSMUSG00000057135	Scimp	A430084P05Rik	SLP adaptor and CSK interacting membrane protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-23866167-3	chr18	23866065	23866265	+	626.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162941, intron 5 of 7)	intron (NM_001162941, intron 5 of 7)	62195.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140322010-2	chr5	140321910	140322110	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010752)	promoter-TSS (NM_010752)	388.0	NM_001356585	17766.0	Mm.118846	NM_008637	ENSMUSG00000036639	Nudt1	Mth1	nudix (nucleoside diphosphate linked moiety X)-type motif 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5847167-2	chr17	5847067	5847267	+	998.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_025664, intron 1 of 17)	B1_Mur4|SINE|Alu	5787.0	NM_025664	66616.0	Mm.89515	NM_025664	ENSMUSG00000002365	Snx9	2700073N08Rik|SDP1|SH3PX1	sorting nexin 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-155481510-4	chr4	155481380	155481580	+	962.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9881.0	NM_001160017	14688.0	Mm.2344	NM_008142	ENSMUSG00000029064	Gnb1	AA409223|C77571|Gnb-1	guanine nucleotide binding protein (G protein), beta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-62876270-6	chr9	62876093	62876293	+	862.922241	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001102468)	TTS (NM_001102468)	-14169.0	NR_003965	677044.0	Mm.422004	NR_003965	ENSMUSG00000074250	Gm10653	-	ribsomal protein S2 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131258266-2	chr1	131258166	131258366	+	551.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019777, intron 18 of 21)	intron (NM_019777, intron 18 of 21)	-13088.0	NM_018750	54354.0	Mm.248291	NM_018750	ENSMUSG00000026430	Rassf5	1300019G20Rik|Maxp1|Nore1|Nore1A|Nore1B|Rapl	Ras association (RalGDS/AF-6) domain family member 5	protein-coding	-0.885343988398316	-0.873197811915141	-0.879568534556306	-0.464008891048743	-0.884809499207366	-0.870535133016439	-0.878945546113603	-0.458408536970068	0.0285539633070526	0.992673327504828	1
Merged-chr13-54071892-6	chr13	54071823	54072023	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027324)	promoter-TSS (NM_027324)	78.0	NM_027324	14057.0	Mm.134191	NM_027324	ENSMUSG00000021474	Sfxn1	2810002O05Rik|A930015P12Rik|f	sideroflexin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-18976405-4	chr2	18976304	18976504	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008845, intron 1 of 9)	ORR1F|LTR|ERVL-MaLR	21717.0	NM_008845	18718.0	Mm.313977	NM_008845	ENSMUSG00000026737	Pip4k2a	AW742916|Pip5k2a	phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-108164919-4	chr3	108164815	108165015	+	894.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9983.0	NM_001305461	229714.0	Mm.73666	NM_175470	ENSMUSG00000046793	Gpr61	-	G protein-coupled receptor 61	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-31147550-2	chr2	31147450	31147650	+	722.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	4741.0	NR_040334	320973.0	Mm.384284	NR_040334		D330023K18Rik	-	RIKEN cDNA D330023K18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-127146099-4	chr6	127146003	127146203	+	834.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009829, exon 3 of 5)	exon (NM_009829, exon 3 of 5)	-3286.0	NR_040274	77558.0	Mm.358918	NR_040273	ENSMUSG00000097166	9330179D12Rik	-	RIKEN cDNA 9330179D12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-62764240-3	chr4	62764152	62764352	+	774.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	90278.0	NM_001310706	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	0.782463172593559	1.67101616046966	0.829698295567924	2.52313764582714	1.69437470748474	1.34619958569201	1.46929439787577	0.815466338200611	-0.906390928854939	0.504583327258351	0.940644928596286
Merged-chr8-91070072-4	chr8	91069970	91070170	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001282000)	promoter-TSS (NM_001282000)	13.0	NM_001282000	19651.0	Mm.235580	NM_011250	ENSMUSG00000031666	Rbl2	PRB2|RBR-2|Rb2|p130	RB transcriptional corepressor like 2	protein-coding	6.84735165192939	6.78541797280996	6.75795740183602	6.52798852672917	5.8857845731528	6.31245908283446	6.16417362792076	6.55312187817375	-0.525942083631617	0.0116051694886501	0.120797128564046
Merged-chr14-72708842-4	chr14	72708733	72708933	+	649.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207636, intron 1 of 25)	intron (NM_207636, intron 1 of 25)	1170.0	NM_207636	319448.0	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72617600-2	chr6	72617500	72617700	+	818.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009444)	promoter-TSS (NM_009444)	-600.0	NM_009443	22134.0	Mm.246563	NM_009443	ENSMUSG00000056429	Tgoln1	AU015504|D6Ertd384e|TGN38|TGN38A|Ttgn1	trans-golgi network protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-84682798-2	chr18	84682698	84682898	+	923.833374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289531)	promoter-TSS (NM_001289531)	-739.0	NM_001289531	66054.0	Mm.29646	NM_023149	ENSMUSG00000024644	Cndp2	0610010E05Rik|C76600|Cn2|Dip-2|Pep-1|Pep1	CNDP dipeptidase 2 (metallopeptidase M20 family)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94379447-2	chr10	94379347	94379547	+	830.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 1 of 4)	intron (NM_001359762, intron 1 of 4)	67498.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-59223004-3	chr11	59222913	59223113	+	639.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007476, intron 1 of 4)	intron (NM_007476, intron 1 of 4)	5149.0	NM_001130408	11840.0	Mm.371546	NM_007476	ENSMUSG00000048076	Arf1	-	ADP-ribosylation factor 1	protein-coding	1.33992627123075	1.64546798732203	0.926705961937595	0.904058697229617	1.14226212963529	0.738659569859224	0.72626366742456	1.53273683434785	-0.627413481589659	0.659195349777831	0.989370253519442
Merged-chr16-32244242-3	chr16	32244221	32244421	+	773.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173439, intron 1 of 2)	intron (NM_173439, intron 1 of 2)	2704.0	NM_173439	268882.0	Mm.256137	NM_173439	ENSMUSG00000035764	Fbxo45	2610017J04Rik|AI463119|BC026799	F-box protein 45	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127019815-2	chr7	127019715	127019915	+	641.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001102563, exon 2 of 4)	exon (NM_001102563, exon 2 of 4)	1396.0	NM_001102563	69017.0	Mm.392047	NM_001102563	ENSMUSG00000045114	Prrt2	1500031I19Rik|AI195361|DSPB3	proline-rich transmembrane protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80993661-6	chr7	80993518	80993718	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178707)	promoter-TSS (NM_178707)	-66.0	NM_178707	233410.0	Mm.29525	NM_178707	ENSMUSG00000005621	Zfp592	A730014M16Rik|Znf592	zinc finger protein 592	protein-coding	0.0830581643167194	-0.33529732304243	-0.525068630444609	-0.527719198892815	-0.270775012945321	-0.520842412918126	-0.524309445173731	-0.527256727387563	-1.67813657333038	0.52857538698437	1
Merged-chr16-31746681-2	chr16	31746581	31746781	+	990.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357281, intron 2 of 22)	RMER1A|Other|Other	-7669.0	NM_001252436	13383.0	Mm.382	NM_007862	ENSMUSG00000022770	Dlg1	B130052P05Rik|Dlgh1|E-dlg/SAP97|SAP-97|SAP97|mKIAA4187	discs large MAGUK scaffold protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80084700-3	chr7	80084568	80084768	+	933.177795	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175433, intron 2 of 4)	intron (NM_175433, intron 2 of 4)	-9411.0	NR_045695	100859962.0	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-50445847-2	chr16	50445747	50445947	+	575.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13381.0	NM_001347240	70508.0	Mm.28940	NM_027444	ENSMUSG00000022641	Bbx	5530401J07Rik|5730403O13Rik	bobby sox HMG box containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-54768528-4	chr14	54768420	54768620	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016972, intron 1 of 10)	intron (NM_016972, intron 1 of 10)	13366.0	NM_016972	50934.0	Mm.276831	NM_016972	ENSMUSG00000022180	Slc7a8	AA408822|LAT2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	protein-coding	3.83255484638848	3.14126770947368	4.17795507104105	4.15945948478593	2.40907283478841	3.16540146454997	3.05540546384529	2.95603853072693	-1.52488608516611	0.00806499619293557	0.0934732723787708
Merged-chr9-97112305-2	chr9	97112205	97112405	+	559.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1264.0	NM_138756	192287.0	Mm.228067	NM_138756	ENSMUSG00000032449	Slc25a36	C330005L02Rik	solute carrier family 25, member 36	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166623349-4	chr2	166623240	166623440	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 5 of 39)	intron (NM_177782, intron 5 of 39)	58818.0	NR_152154	433503.0	Mm.491336	NR_152154		Gm29679	-	predicted gene, 29679	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89392536-2	chr3	89392436	89392636	+	759.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355211)	promoter-TSS (NM_001355211)	-467.0	NM_001355211	22724.0	Mm.262184	NM_009565	ENSMUSG00000028042	Zbtb7b	Thpok|Zfp67|c-Krox	zinc finger and BTB domain containing 7B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4003821-4	chr16	4003712	4003912	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2134.0	NM_177472	52864.0	Mm.29935	NM_177472	ENSMUSG00000039738	Slx4	AI256635|AI426760|Btbd12|D16Bwg1016e	SLX4 structure-specific endonuclease subunit homolog (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-61418152-4	chr11	61418102	61418302	+	788.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35790.0	NM_009548	22671.0	Mm.89201	NM_009548	ENSMUSG00000010086	Rnf112	ZNF179|Zfp179|bfp|neurolastin	ring finger protein 112	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-103488992-4	chr2	103488891	103489091	+	950.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3838.0	NM_009804	12359.0	Mm.4215	NM_009804	ENSMUSG00000027187	Cat	2210418N07|Cas-1|Cas1|Cs-1	catalase	protein-coding	3.82602817754706	3.23720786596095	3.00009273915709	4.2111386674849	3.80348556331018	3.26189224763102	3.55233863023556	4.18513206312189	0.124136885287927	0.819328868659151	0.998431161219273
Merged-chr12-108764492-2	chr12	108764392	108764592	+	866.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Ricksha_c|DNA|MULE-MuDR	-28819.0	NM_009537	22632.0	Mm.3868	NM_009537	ENSMUSG00000021264	Yy1	AW488674|NF-E1	YY1 transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19740521-2	chr7	19740421	19740621	+	961.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008990, intron 1 of 8)	intron (NM_008990, intron 1 of 8)	9052.0	NM_008990	19294.0	Mm.4341	NM_008990	ENSMUSG00000062300	Nectin2	AI325026|AI987993|Cd112|MPH|Pvr|Pvrl2|Pvs|nectin-2	nectin cell adhesion molecule 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-58504821-4	chr4	58504724	58504924	+	819.299988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010336, intron 1 of 3)	intron (NM_010336, intron 1 of 3)	-5421.0	NM_001290486	14745.0	Mm.4772	NM_010336	ENSMUSG00000038668	Lpar1	AI326300|Edg2|Gpcr26|Kdt2|lpA1|vzg-1	lysophosphatidic acid receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6273109-2	chr19	6273009	6273209	+	682.700012	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur2|SINE|Alu	-3787.0	NM_010119	13660.0	Mm.30169	NM_010119	ENSMUSG00000024772	Ehd1	AA409636|Past1|RME-1	EH-domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-17883898-4	chr17	17883803	17884003	+	978.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013521)	promoter-TSS (NM_013521)	36.0	NM_013521	14293.0	Mm.56951	NM_013521	ENSMUSG00000045551	Fpr1	FPR|LXA4R|fMLF-R	formyl peptide receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-49831683-2	chr18	49831583	49831783	+	698.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1314.0	NM_001081371	240283.0	Mm.257790	NM_001081371	ENSMUSG00000037416	Dmxl1	C630007L23Rik|D030030C22	Dmx-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71834505-3	chr17	71834400	71834600	+	989.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271483, intron 13 of 16)	intron (NM_001271483, intron 13 of 16)	52553.0	NM_030179	78785.0	Mm.196382	NM_030179	ENSMUSG00000024059	Clip4	1700024K14Rik|1700074B05Rik|4833417L20Rik|5830409B12Rik|Rsnl2	CAP-GLY domain containing linker protein family, member 4	protein-coding	1.98399154161565	1.34973356124955	2.00148644178895	1.27511927063059	3.08737073459848	2.77428870614726	2.77392559075849	3.06399073979224	2.83646204501595	0.00164932008594784	0.0291293558261073
Merged-chr15-6708310-4	chr15	6708209	6708409	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030168)	promoter-TSS (NM_030168)	-72.0	NM_030168	78757.0	Mm.275811	NM_030168	ENSMUSG00000050310	Rictor	4921505C17Rik|6030405M08Rik|AVO3|AW492497|D530039E11Rik	RPTOR independent companion of MTOR, complex 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-138275125-4	chr1	138275025	138275225	+	930.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177397, intron 1 of 2)	intron (NM_177397, intron 1 of 2)	1387.0	NM_177397	338375.0	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-42339418-4	chr6	42339303	42339503	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-10425.0	NM_001289619	22793.0	Mm.282303	NM_011777	ENSMUSG00000029860	Zyx	9530098H06Rik|R75157	zyxin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36515234-2	chr18	36515134	36515334	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_010415, exon 2 of 6)	exon (NM_010415, exon 2 of 6)	571.0	NM_010415	15200.0	Mm.289681	NM_010415	ENSMUSG00000024486	Hbegf	AW047313|Dtr|Dts|Hegfl	heparin-binding EGF-like growth factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4229646-2	chr19	4229546	4229746	+	999.875	f1_balb.idr|f1_c57bl6.idr	intron (NR_132308, intron 2 of 3)	intron (NR_132308, intron 2 of 3)	-2247.0	NM_027196	69745.0	Mm.32518	NM_027196	ENSMUSG00000024854	Pold4	2410012M21Rik|AI463381|AW060307|Polds|p12	polymerase (DNA-directed), delta 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-36151034-4	chr3	36150918	36151118	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001101478)	promoter-TSS (NM_001101478)	-62.0	NM_001101478	241944.0	Mm.260056	NM_001101478	ENSMUSG00000033883	D3Ertd254e	-	DNA segment, Chr 3, ERATO Doi 254, expressed	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83630417-2	chr6	83630284	83630484	+	578.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	25732.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-30550215-3	chr10	30550108	30550308	+	844.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358806, intron 9 of 10)	L1MB7|LINE|L1	50492.0	NM_028604	73681.0	Mm.294503	NM_028604	ENSMUSG00000019792	Trmt11	2410075D05Rik|3110045I18Rik|AW213713	tRNA methyltransferase 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139338572-2	chr5	139338472	139338672	+	827.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_197980, intron 2 of 2)	intron (NM_197980, intron 2 of 2)	6594.0	NM_197980	68033.0	Mm.261064	NM_197980	ENSMUSG00000045438	Cox19	1810074D02Rik|2810437L13Rik	cytochrome c oxidase assembly protein 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-40800108-4	chr9	40800004	40800204	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1169.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	3.84379193112018	3.74832335050495	4.47604093480807	2.77605277373992	3.51321008641798	4.00359125869084	4.17835487919629	2.92903927403457	-0.152788520066642	0.787276619847178	0.998431161219273
Merged-chr19-10818715-4	chr19	10818620	10818820	+	983.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009852, intron 1 of 12)	intron (NM_009852, intron 1 of 12)	11338.0	NM_001037801	12511.0	Mm.290897	NM_009852	ENSMUSG00000024670	Cd6	-	CD6 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-17251574-3	chr19	17251450	17251650	+	639.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	87955.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	3.87186156854765	3.77948796417477	3.94157118558544	3.2885731330534	3.39864095105219	4.03197935986785	3.76135805320615	4.18645771735999	0.186984009879377	0.701917366171454	0.998431161219273
Merged-chr5-115242480-2	chr5	115242380	115242580	+	910.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_016698, exon 16 of 17)	exon (NM_016698, exon 16 of 17)	6629.0	NM_026398	117109.0	Mm.24636	NM_026398	ENSMUSG00000060152	Pop5	1500019J17Rik|2700077E03Rik|AW049989|Rnasep3	processing of precursor 5, ribonuclease P/MRP family (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-60880144-2	chr2	60880044	60880244	+	754.200012	f1_balb.idr|f1_c57bl6.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	1294.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171345620-4	chr1	171345498	171345698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360824)	promoter-TSS (NM_001360824)	47.0	NM_001242580	27045.0	Mm.12915	NM_012049	ENSMUSG00000013997	Nit1	AI255805|ESTM30|W57327	nitrilase 1	protein-coding	4.95384633955667	4.84974456431895	5.8126484199511	4.83522084872695	5.60194779444214	5.02561217513067	6.27269398389702	4.59129660427623	0.395211880821609	0.305866084890914	0.806865344318695
Merged-chr15-88870957-2	chr15	88870857	88871057	+	734.400024	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8763.0	NM_145478	223775.0	Mm.400129	NM_145478	ENSMUSG00000035828	Pim3	BC026639|Kid1	proviral integration site 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-62512282-2	chr4	62512182	62512382	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001276446, intron 4 of 11)	intron (NM_001276446, intron 4 of 11)	7627.0	NM_001276446	17025.0	Mm.6988	NM_008525	ENSMUSG00000028393	Alad	ALADH|Lv	aminolevulinate, delta-, dehydratase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-88262233-4	chr1	88261872	88262072	+	885.126587	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_198652, exon 8 of 8)	3' UTR (NM_198652, exon 8 of 8)	7436.0	NR_040291	78605.0	Mm.384762	NR_040291		6430706D22Rik	-	RIKEN cDNA 6430706D22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-5786376-2	chr11	5786276	5786476	+	585.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2107.0	NM_001146309	13169.0	Mm.256925	NM_013810	ENSMUSG00000020476	Dbnl	Abp1|SH3P7|mAbp1	drebrin-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-33274513-1	chr11	33274413	33274613	+	777.0	f0_balb.idr	intron (NR_110973, intron 23 of 28)	L2|LINE|L2	-70925.0	NM_019916	27140.0	Mm.25362	NM_019916	ENSMUSG00000040610	Tlx3	Hox11l2|Rnx|Tlx1l2	T cell leukemia, homeobox 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-29230935-2	chr7	29230835	29231035	+	555.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033525, intron 1 of 2)	intron (NM_001033525, intron 1 of 2)	1587.0	NM_001033525	52150.0	Mm.24877	NM_001033525	ENSMUSG00000046410	Kcnk6	D7Ertd764e|Toss|Twik2	potassium inwardly-rectifying channel, subfamily K, member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-86076615-2	chr12	86076515	86076715	+	646.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009368, intron 1 of 6)	intron (NM_009368, intron 1 of 6)	2426.0	NM_009368	21809.0	Mm.3992	NM_009368	ENSMUSG00000021253	Tgfb3	TGF-beta-3|Tgfb-3	transforming growth factor, beta 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-71025640-2	chr2	71025540	71025740	+	660.099976	f1_balb.idr|f1_c57bl6.idr	intron (NM_145524, intron 1 of 9)	intron (NM_145524, intron 1 of 9)	-7266.0	NM_001110512	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-46245944-4	chr2	46245835	46246035	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	549330.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27768008-4	chr2	27767913	27768113	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC3|LINE|L1	57430.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-67715412-3	chr14	67715323	67715523	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285933)	promoter-TSS (NM_001285933)	187.0	NM_001110162	108912.0	Mm.33831	NM_175384	ENSMUSG00000048922	Cdca2	2610311M19Rik|AI586158	cell division cycle associated 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-58668197-1	chr2	58668097	58668297	+	543.0	f0_c57.idr	intron (NM_001289660, intron 1 of 7)	intron (NM_001289660, intron 1 of 7)	-86987.0	NM_001289659	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-97573230-3	chr15	97573128	97573328	+	816.8444820000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MEc|LINE|L1	132594.0	NM_028003	71919.0	Mm.12255	NM_028003	ENSMUSG00000022466	Rpap3	2310042P20Rik|D15Ertd682e	RNA polymerase II associated protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-127108464-3	chr6	127108334	127108534	+	930.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177003, intron 1 of 5)	intron (NM_177003, intron 1 of 5)	1118.0	NM_177003	319801.0	Mm.101836	NM_177003	ENSMUSG00000038028	Tigar	9630033F20Rik|AA793651|AI595337|C79710|C85509	Trp53 induced glycolysis repulatory phosphatase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-114624817-3	chr2	114624690	114624890	+	942.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025675, intron 3 of 8)	intron (NM_025675, intron 3 of 8)	30174.0	NM_001356438	66632.0	Mm.117809	NM_025675	ENSMUSG00000057147	Dph6	5730421E18Rik|Atpbd4	diphthamine biosynthesis 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21012061-4	chr9	21011999	21012199	+	837.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3841.0	NM_010493	15894.0	Mm.435508	NM_010493	ENSMUSG00000037405	Icam1	CD54|Icam-1|Ly-47|MALA-2	intercellular adhesion molecule 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-75887316-2	chr14	75887216	75887416	+	578.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39393.0	NR_028481	100303751.0	Mm.484707	NR_028481	ENSMUSG00000065147	Snora31	MBI-161	small nucleolar RNA, H/ACA box 31	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-46577672-4	chr18	46577577	46577777	+	839.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4a2|LINE|L1	-3144.0	NM_173394	225471.0	Mm.149280	NM_173394	ENSMUSG00000056130	Ticam2	B430113A10|TICAM-2|TRAM|Tirp|Trif	toll-like receptor adaptor molecule 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-70911182-4	chr12	70911077	70911277	+	881.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-26680.0	NM_019785	56444.0	Mm.29317	NM_019785	ENSMUSG00000021076	Actr10	Actr11|Arp11	ARP10 actin-related protein 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-181239042-4	chr2	181238935	181239135	+	920.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183162, intron 4 of 18)	L1_Mus3|LINE|L1	2992.0	NM_183162	229003.0	Mm.315872	NM_183162	ENSMUSG00000027580	Helz2	PDIP1|Pric285|mKIAA1769|mPDIP1	helicase with zinc finger 2, transcriptional coactivator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-90397057-4	chr16	90396949	90397149	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015755, intron 1 of 10)	MLTR14|LTR|ERV1	10652.0	NM_015755	26559.0	Mm.125874	NM_015755	ENSMUSG00000053414	Hunk	Bstk1|Mak-v	hormonally upregulated Neu-associated kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-80063982-4	chr12	80063890	80064090	+	993.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49023.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-103899311-3	chr14	103899218	103899418	+	575.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54842.0	NM_001136061	13618.0	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-32460586-4	chr6	32460482	32460682	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175750, intron 3 of 31)	intron (NM_175750, intron 3 of 31)	-50559.0	NR_040277	319849.0	Mm.440860	NR_040277	ENSMUSG00000086763	Plxna4os1	B230378P21Rik	plexin A4, opposite strand 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-130785124-4	chr2	130785026	130785226	+	963.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029432, intron 11 of 36)	intron (NM_029432, intron 11 of 36)	18975.0	NR_024097	100043766.0	Mm.447040	NR_024097		Gm14057	-	Ppp1r14c pseudogene	pseudo	4.75248442718093	3.73012358333024	3.6915852817455	4.97085290497569	4.52040206402382	4.02475512337849	3.89055092312172	4.7234352905032	-0.105716830411835	0.818866601698993	0.998431161219273
Merged-chr19-57273438-4	chr19	57273332	57273532	+	909.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045319)	promoter-TSS (NR_045319)	-528.0	NR_045319	78120.0	Mm.445892	NR_045319		4930449E18Rik	-	RIKEN cDNA 4930449E18 gene	ncRNA	2.97828737982918	1.31958381886444	2.08268945529876	2.37412733112232	2.59577166452293	1.32681615618867	2.0993986458032	2.28114361731039	-0.391785344168015	0.698182977573816	0.998284579433352
Merged-chr17-15810753-3	chr17	15810628	15810828	+	781.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178615, intron 2 of 2)	intron (NM_178615, intron 2 of 2)	15858.0	NM_178615	68799.0	Mm.293466	NM_178615	ENSMUSG00000048027	Rgmb	1110059F19Rik|DRAGON	repulsive guidance molecule family member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152575142-4	chr1	152575050	152575250	+	838.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 3 of 17)	intron (NM_016846, intron 3 of 17)	50067.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-40742885-2	chr19	40742785	40742985	+	622.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	83115.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34922749-2	chr17	34922649	34922849	+	638.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023557, intron 11 of 20)	ID_B1|SINE|B4	8283.0	NM_023557	70129.0	Mm.183126	NM_023557	ENSMUSG00000007034	Slc44a4	2210409B01Rik|NG22|mTPPT1	solute carrier family 44, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125271694-4	chr6	125271609	125271809	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015527, intron 3 of 3)	intron (NR_015527, intron 3 of 3)	6184.0	NR_015527	73870.0	Mm.440681	NR_015527	ENSMUSG00000108129	4930417O13Rik	-	RIKEN cDNA 4930417O13 gene	ncRNA	4.34684964531965	3.92862263704723	4.28231150244455	5.42857371775363	4.71292563690658	4.19412393533499	4.25451299920544	3.78281669066801	-0.447236882239435	0.326755360737742	0.829199211128231
Merged-chr13-43802952-4	chr13	43802851	43803051	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001289915, exon 5 of 5)	3' UTR (NM_001289915, exon 5 of 5)	17839.0	NM_001289915	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-34034679-2	chr13	34034579	34034779	+	640.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009068, exon 11 of 11)	3' UTR (NM_009068, exon 11 of 11)	-2962.0	NM_026512	68021.0	Mm.140243	NM_026512	ENSMUSG00000038286	Bphl	2010012D11Rik|5730533B08Rik|AI115341	biphenyl hydrolase-like (serine hydrolase, breast epithelial mucin-associated antigen)	protein-coding	0.653883579358923	1.67666942415092	0.67196319624677	0.98022310044666	0.655557727147793	1.68923800622101	0.673911886052481	0.985531250695279	0.0375405087851646	0.981943741727227	0.998431161219273
Merged-chr1-155973326-4	chr1	155973265	155973465	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039184)	promoter-TSS (NM_001039184)	-110.0	NM_001039184	74081.0	Mm.260247	NM_001039184	ENSMUSG00000033671	Cep350	4933409L06Rik|6430546F08Rik	centrosomal protein 350	protein-coding	5.65043385933911	5.76136660906832	6.30848557748758	5.87455215044079	5.52485439944945	5.43059683850308	5.00354579246514	5.48917329564113	-0.60679630274229	0.0251828519359563	0.210211403660207
Merged-chr3-123256876-4	chr3	123256766	123256966	+	991.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR17|LTR|ERVK	-10630.0	NM_027135	69608.0	Mm.29293	NM_027135	ENSMUSG00000039234	Sec24d	2310020L09Rik|Gm1349	Sec24 related gene family, member D (S. cerevisiae)	protein-coding	3.39027034821197	3.08719884262042	4.18496751219368	3.00202032642853	2.96398985070066	3.22341922951371	3.30995675233209	2.51329856638076	-0.775943148472031	0.211674370819123	0.700513352863488
Merged-chr2-166623750-4	chr2	166623606	166623806	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 5 of 39)	L1M4|LINE|L1	59184.0	NR_152154	433503.0	Mm.491336	NR_152154		Gm29679	-	predicted gene, 29679	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-95301288-2	chr10	95301188	95301388	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001330138, intron 2 of 2)	intron (NM_001330138, intron 2 of 2)	22421.0	NM_001330138	12905.0	Mm.473739	NM_009950	ENSMUSG00000045867	Cradd	RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167997982-2	chr2	167997882	167998082	+	726.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080708, intron 3 of 21)	intron (NM_001080708, intron 3 of 21)	12611.0	NM_001080708	69553.0	Mm.68454	NM_001080708	ENSMUSG00000074577	Ripor3	2310033K02Rik|Fam65c|Gm124	RIPOR family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-69666922-4	chr18	69666796	69666996	+	856.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 15 of 19)	intron (NM_001361128, intron 15 of 19)	-258663.0	NM_201362	381175.0	Mm.266831	NM_201362	ENSMUSG00000038903	Ccdc68	BC046343	coiled-coil domain containing 68	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-88731409-4	chr10	88731302	88731502	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025859)	promoter-TSS (NM_025859)	-12.0	NM_025859	104303.0	Mm.291247	NM_025859	ENSMUSG00000060904	Arl1	2310008D22Rik|AU019749	ADP-ribosylation factor-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-78401416-2	chr17	78401316	78401516	+	994.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360407, intron 4 of 9)	MLT1B|LTR|ERVL-MaLR	16736.0	NM_001285949	225020.0	Mm.236835	NM_199448	ENSMUSG00000056121	Fez2	9030616F16|D17Ertd315e	fasciculation and elongation protein zeta 2 (zygin II)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70306254-4	chr11	70306152	70306352	+	854.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR73|LTR|ERV1	16278.0	NM_145684	11685.0	Mm.274093	NM_145684	ENSMUSG00000018907	Alox12e	12-LOX|8-LOX|AW259591|Alox12-ps1|Alox12-ps2|Aloxe|e-LOX1	arachidonate lipoxygenase, epidermal	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-23986369-2	chr16	23986269	23986469	+	590.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009744, intron 1 of 9)	intron (NM_009744, intron 1 of 9)	2483.0	NM_009744	12053.0	Mm.347398	NM_009744	ENSMUSG00000022508	Bcl6	Bcl5	B cell leukemia/lymphoma 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-123102357-4	chr8	123102275	123102475	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016738)	promoter-TSS (NM_016738)	25.0	NM_016738	270106.0	Mm.319719	NM_016738	ENSMUSG00000000740	Rpl13	A52|L13	ribosomal protein L13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-122805581-4	chr9	122805521	122805721	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001013405)	promoter-TSS (NM_001013405)	74.0	NM_001013405	382117.0	Mm.215892	NM_001013405	ENSMUSG00000046603	Tcaim	D9Ertd402e|Gm1129|TOAG-1	T cell activation inhibitor, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-32715751-2	chr11	32715651	32715851	+	576.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271347, intron 3 of 12)	intron (NM_001271347, intron 3 of 12)	73196.0	NM_001271347	103583.0	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-97576922-4	chr15	97576817	97577017	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	128905.0	NM_028003	71919.0	Mm.12255	NM_028003	ENSMUSG00000022466	Rpap3	2310042P20Rik|D15Ertd682e	RNA polymerase II associated protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-60266603-2	chr14	60266503	60266703	+	654.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_144843, intron 1 of 13)	intron (NM_144843, intron 1 of 13)	1398.0	NM_144843	219135.0	Mm.247007	NM_144843	ENSMUSG00000021987	Mtmr6	4022440C11Rik|AI428804|AU041072	myotubularin related protein 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55560681-5	chr14	55560519	55560719	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199009)	promoter-TSS (NM_001199009)	-304.0	NM_001199009	28199.0	Mm.11535	NM_133734	ENSMUSG00000022214	Dcaf11	0710008A13Rik|C76035|D14Ucla1|Dacf11|GLO14|Wdr23	DDB1 and CUL4 associated factor 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114892454-4	chr11	114892341	114892541	+	926.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359812, intron 2 of 7)	RLTR12B2|LTR|ERVK	2400.0	NM_170758	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-4865160-2	chr2	4865060	4865260	+	552.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-16404.0	NM_175400	109079.0	Mm.34329	NM_175400	ENSMUSG00000026662	Sephs1	1110046B24Rik|AA589574|AI505014|AW111620|SELD|SPS|SPS1	selenophosphate synthetase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166083631-4	chr2	166083530	166083730	+	897.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252579, intron 10 of 20)	intron (NM_001252579, intron 10 of 20)	71655.0	NM_001355619	72043.0	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-66261163-3	chr14	66261073	66261273	+	692.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	19879.0	NM_001162366	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88240485-2	chr3	88240385	88240585	+	628.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14199.0	NM_021375	58176.0	Mm.103777	NM_021375	ENSMUSG00000104445	Rhbg	-	Rhesus blood group-associated B glycoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-50170096-4	chr17	50170018	50170218	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181397, intron 1 of 9)	(CA)n|Simple_repeat|Simple_repeat	20379.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-23380200-4	chr1	23380065	23380265	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081079, intron 1 of 6)	intron (NM_001081079, intron 1 of 6)	3010.0	NM_001081079	70155.0	Mm.28013	NM_001081079	ENSMUSG00000026158	Ogfrl1	2210417C17Rik	opioid growth factor receptor-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-138262570-4	chr1	138262463	138262663	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-11175.0	NM_177397	338375.0	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-30896646-7	chr6	30896464	30896664	+	997.714294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_054073)	TTS (NM_054073)	230.0	NR_149738	54160.0	Mm.39896	NM_017478	ENSMUSG00000025607	Copg2	AW227625|gamma-2-COP	coatomer protein complex, subunit gamma 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-105594766-4	chr5	105594674	105594874	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133897, intron 3 of 3)	intron (NM_133897, intron 3 of 3)	75303.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-117868305-3	chr3	117868214	117868414	+	834.333374	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001190156, intron 1 of 7)	intron (NM_001190156, intron 1 of 7)	622.0	NM_001190156	76561.0	Mm.33824	NM_029655	ENSMUSG00000028007	Snx7	2510028H01Rik	sorting nexin 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-98354204-3	chr13	98354164	98354364	+	731.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008242)	promoter-TSS (NM_008242)	19.0	NM_008242	15229.0	Mm.347441	NM_008242	ENSMUSG00000078302	Foxd1	AI385632|BF-2|FREAC4|Hfh10|Hfhbf2	forkhead box D1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-4198307-2	chr12	4198207	4198407	+	775.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_138305, exon 7 of 21)	exon (NM_138305, exon 7 of 21)	35658.0	NM_134046	52504.0	Mm.70546	NM_134046	ENSMUSG00000020652	Cenpo	2810429O05Rik|8430427C03Rik|D12Ertd482e	centromere protein O	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-18733318-4	chr16	18733246	18733446	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43501.0	NM_013805	12741.0	Mm.22768	NM_013805	ENSMUSG00000041378	Cldn5	AI854493|MBEC1|Tmvcf	claudin 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-88286324-2	chr7	88286224	88286424	+	702.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009982, intron 2 of 6)	RSINE1|SINE|B4	8239.0	NM_001311790	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-37263775-2	chr1	37263675	37263875	+	743.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_009918)	TTS (NM_009918)	-36063.0	NM_030266	269180.0	Mm.5294	NM_030266	ENSMUSG00000026113	Inpp4a	107kDa|9630012D15|D130048C09Rik|R74740	inositol polyphosphate-4-phosphatase, type I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-31997977-2	chr12	31997880	31998080	+	696.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011158, intron 2 of 10)	intron (NM_011158, intron 2 of 10)	-47735.0	NM_001361928	73389.0	Mm.390461	NM_153198	ENSMUSG00000002996	Hbp1	1700058O05Rik|BE629963|C330012F01Rik|C86454	high mobility group box transcription factor 1	protein-coding	-0.119914766473411	-0.476291058701473	-0.480027738234522	-0.482904784848028	-0.34352270808114	0.138267052152006	-0.479204326864036	-0.482402544599802	1.18530131180853	0.648246020125214	1
Merged-chr3-51636817-4	chr3	51636739	51636939	+	860.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24340.0	NM_174995	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-68867357-4	chr2	68867242	68867442	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347161, intron 1 of 10)	intron (NM_001347161, intron 1 of 10)	5901.0	NM_001347161	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-37329656-2	chr9	37329556	37329756	+	694.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081429, intron 4 of 15)	intron (NM_001081429, intron 4 of 15)	18736.0	NM_001081429	245902.0	Mm.390150	NM_001081429	ENSMUSG00000034303	Ccdc15	A630039F14Rik|D030074L19	coiled-coil domain containing 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35807005-2	chr17	35806905	35807105	+	566.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	-14708.0	NM_133662	15937.0	Mm.25613	NM_133662	ENSMUSG00000003541	Ier3	AI663993|IEX-1|cI-3|gly96	immediate early response 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-35131586-4	chr12	35131491	35131691	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001014973, intron 20 of 25)	ORR1D1-int|LTR|ERVL-MaLR	63306.0	NR_030449	751520.0		NR_030449	ENSMUSG00000076253	Mir680-3	Mirn680-3	microRNA 680-3	ncRNA	4.57503066918059	4.99755809241638	5.0789557635092	4.98753264828948	4.5290226329148	5.46721770109814	5.48638955766257	4.74209645588273	0.229775138110357	0.509914849738768	0.944974548181628
Merged-chr14-55085174-3	chr14	55085056	55085256	+	564.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039198, intron 1 of 9)	intron (NM_001039198, intron 1 of 9)	6892.0	NM_001039198	239102.0	Mm.441113	NM_001039198	ENSMUSG00000040721	Zfhx2	ZFH-5	zinc finger homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-51044844-4	chr9	51044735	51044935	+	900.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	32259.0	NM_001033534	244864.0	Mm.335152	NM_001033534	ENSMUSG00000060594	Layn	E030012M19Rik|Gm511	layilin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-42397431-4	chr6	42397324	42397524	+	947.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2814.0	NM_001001452	387514.0	Mm.377921	NM_001001452	ENSMUSG00000046652	Tas2r143	Gm1404|Tas2r43|mt2r36	taste receptor, type 2, member 143	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-152113058-2	chr2	152112958	152113158	+	697.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7534.0	NM_029688	76650.0	Mm.218639	NM_029688	ENSMUSG00000032802	Srxn1	1700127B04Rik|AI854065|AW488194|Npn3|Srx|Srx1|TX01	sulfiredoxin 1 homolog (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6189535-2	chr19	6189435	6189635	+	873.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001165919, intron 1 of 10)	intron (NM_001165919, intron 1 of 10)	5125.0	NM_001165919	622554.0	Mm.159757	NM_001165919	ENSMUSG00000024786	Majin	1700123I01Rik	membrane anchored junction protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-23987425-5	chr16	23987331	23987531	+	991.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009744, intron 1 of 9)	intron (NM_009744, intron 1 of 9)	1421.0	NM_009744	12053.0	Mm.347398	NM_009744	ENSMUSG00000022508	Bcl6	Bcl5	B cell leukemia/lymphoma 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-34553660-4	chr19	34553552	34553752	+	922.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355262, intron 1 of 2)	MLT2F|LTR|ERVL	2564.0	NM_001355262	15958.0	Mm.2036	NM_008332	ENSMUSG00000045932	Ifit2	AV302338|Ifi54|P54	interferon-induced protein with tetratricopeptide repeats 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-30867219-3	chr14	30867132	30867332	+	756.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028839, intron 4 of 7)	intron (NM_028839, intron 4 of 7)	-12025.0	NM_181390	66175.0	Mm.220895	NM_181390	ENSMUSG00000042485	Mustn1	1110028G01Rik|Mustang	musculoskeletal, embryonic nuclear protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-40939226-4	chr13	40939120	40939320	+	979.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133219, intron 1 of 2)	intron (NM_133219, intron 1 of 2)	21586.0	NM_133219	14538.0	Mm.314757	NM_008105	ENSMUSG00000021360	Gcnt2	5330430K10Rik|IGnT|IGnTA|IGnTB|IGnTC	glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-99081746-4	chr10	99081630	99081830	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25352.0	NM_027740	382406.0	Mm.440656	NM_027740	ENSMUSG00000019952	Poc1b	4933430F16Rik|Wdr51b	POC1 centriolar protein B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-36719435-4	chr15	36719338	36719538	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	71494.0	NM_001253807	22631.0	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97988932-4	chr11	97988822	97989022	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_152188)	TTS (NR_152188)	-2476.0	NM_001163608	72324.0	Mm.39617	NM_028199	ENSMUSG00000017417	Plxdc1	2410003I07Rik|AI848450|Tem7	plexin domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-88635783-4	chr1	88635678	88635878	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	66413.0	NM_177305	320982.0	Mm.27968	NM_177305	ENSMUSG00000049866	Arl4c	A630084M22Rik|Arl7|LAK	ADP-ribosylation factor-like 4C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-4922162-3	chr18	4922106	4922306	+	926.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	109720.0	NR_045881	100038439.0	Mm.387569	NR_045881	ENSMUSG00000097043	Gm10556	-	predicted gene 10556	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131095812-4	chr1	131095695	131095895	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008551, intron 1 of 9)	intron (NM_008551, intron 1 of 9)	2048.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	4.27430601633743	3.86150247533187	4.55394203355379	4.03913704473122	4.42361004150102	3.88970061649778	3.37925812450583	4.11659510576788	-0.263144828341924	0.561926983549634	0.960362415684079
Merged-chr1-165739278-4	chr1	165739088	165739288	+	891.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24570.0	NR_149310	433375.0	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-83747638-4	chr1	83747542	83747742	+	918.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MEd|LINE|L1	-339442.0	NM_001356547	77629.0	Mm.154303	NM_172430	ENSMUSG00000026163	Sphkap	4930544G21Rik|A930009L15Rik|AI852220|SKIP|mKIAA1678	SPHK1 interactor, AKAP domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-85962303-3	chr1	85962203	85962403	+	911.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-1248.0	NM_001033290	227326.0	Mm.244158	NM_001033290	ENSMUSG00000049608	Gpr55	CTFL|Gm218|Lpir1	G protein-coupled receptor 55	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153291899-3	chr2	153291824	153292024	+	808.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008444, intron 1 of 8)	intron (NM_008444, intron 1 of 8)	508.0	NM_008444	16569.0	Mm.315560	NM_008444	ENSMUSG00000027475	Kif3b	AI854312|AW549267|mKIAA0359	kinesin family member 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5714245-4	chr19	5714153	5714353	+	831.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114595, intron 11 of 17)	intron (NM_001114595, intron 11 of 17)	9782.0	NM_010609	16530.0	Mm.440033	NM_010609	ENSMUSG00000024936	Kcnk7	2310014G03Rik|Kcnk6|Kcnk8|Knot|Mlk3	potassium channel, subfamily K, member 7	protein-coding	1.49640353043399	1.38542295136166	1.15052494790521	2.06972992931386	1.08173743195854	1.39586911837721	2.15702512528642	0.909648479648508	-0.247476649931783	0.840714825222486	0.998431161219273
Merged-chr13-112413775-3	chr13	112413669	112413869	+	908.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50301.0	NM_010560	16195.0	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-134230272-2	chr5	134230172	134230372	+	765.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286037)	promoter-TSS (NM_001286037)	-647.0	NR_104383	17969.0	Mm.425296	NM_010876	ENSMUSG00000015950	Ncf1	NCF-47K|NOXO2|Ncf-1|p47-phox|p47<phox>|p47phox	neutrophil cytosolic factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-27303353-1	chr12	27303253	27303453	+	791.0	f0_balb.idr	Intergenic	Intergenic	39365.0	NM_009234	20666.0	Mm.41702	NM_009234	ENSMUSG00000063632	Sox11	1110038H03Rik|6230403H02Rik|AI836553|end1	SRY (sex determining region Y)-box 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-87639972-4	chr1	87639871	87640071	+	998.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110192, intron 2 of 26)	intron (NM_001110192, intron 2 of 26)	19659.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-53552975-3	chr19	53552888	53553088	+	659.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23670.0	NM_001085390	240672.0	Mm.482424	NM_001085390	ENSMUSG00000034765	Dusp5	Gm337	dual specificity phosphatase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-18249921-2	chr16	18249821	18250021	+	998.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_001080999, exon 2 of 12)	exon (NM_001080999, exon 2 of 12)	1038.0	NM_001081000	15547.0	Mm.271798	NM_008307	ENSMUSG00000022721	Trmt2a	Htf9c	TRM2 tRNA methyltransferase 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-30913198-2	chr5	30913098	30913298	+	843.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133918)	promoter-TSS (NM_133918)	-588.0	NM_133918	100952.0	Mm.286375	NM_133918	ENSMUSG00000029163	Emilin1	5830419M17Rik|AW229038|BB105748|EMILIN-1|gp115	elastin microfibril interfacer 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-137652632-3	chr5	137652530	137652730	+	754.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303271, intron 11 of 12)	intron (NM_001303271, intron 11 of 12)	-6916.0	NM_010571	16369.0	Mm.24486	NM_010571	ENSMUSG00000047182	Irs3	AA408304	insulin receptor substrate 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-51300904-2	chr17	51300804	51301004	+	599.166626	f1_balb.idr|f1_c57bl6.idr	intron (NR_037268, intron 3 of 4)	Lx4A|LINE|L1	22916.0	NR_037253	100526485.0		NR_037253	ENSMUSG00000105330	Mir669a-6	mmu-mir-669a-6	microRNA 669a-6	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-85494678-2	chr8	85494578	85494778	+	791.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_173866, intron 2 of 11)	intron (NM_173866, intron 2 of 11)	2061.0	NM_173866	108682.0	Mm.200423	NM_173866	ENSMUSG00000031700	Gpt2	4631422C05Rik|ALT2|AU014768|AU041193|C87201	glutamic pyruvate transaminase (alanine aminotransferase) 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-23234308-2	chr16	23234208	23234408	+	712.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252505, intron 1 of 7)	intron (NM_001252505, intron 1 of 7)	8287.0	NM_001252505	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-95623990-2	chr1	95623890	95624090	+	643.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009183, intron 4 of 4)	intron (NM_009183, intron 4 of 4)	43604.0	NM_009183	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46864276-4	chr19	46864174	46864374	+	997.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001102471, intron 4 of 6)	intron (NM_001102471, intron 4 of 6)	98077.0	NM_029810	76952.0	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-35919783-2	chr18	35919683	35919883	+	877.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45047.0	NM_001289602	74002.0	Mm.196944	NM_028707	ENSMUSG00000024347	Psd2	6330404E20Rik|AW125584|EFA6C	pleckstrin and Sec7 domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-128805332-4	chr6	128805260	128805460	+	875.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M3|LINE|L1	-16719.0	NM_008527	17059.0	Mm.480764	NM_008527	ENSMUSG00000030325	Klrb1c	AI462337|CD161|Klrb1b|Ly-59|Ly55c|Ly59|NK-RP1|NK1.1|NKR-P1.9|NKRP1|NKRP140|Nk-1|Nk-1.2|Nk1|Nk1.2|Nkrp1b|Nkrp1c|ly-55c	killer cell lectin-like receptor subfamily B member 1C	protein-coding	1.54126228911201	2.34361492180727	0.973049231439435	1.3476147761205	1.554682777753	1.44284779186094	1.20712521826334	1.75520639848099	-0.512589528479479	0.663442669062577	0.991657818949578
Merged-chr18-83011051-2	chr18	83010951	83011151	+	676.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-90491.0	NR_033307	75853.0	Mm.420737	NR_033307		4930592I03Rik	-	RIKEN cDNA 4930592I03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-102629602-2	chr9	102629502	102629702	+	655.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_181394, intron 1 of 2)	intron (NM_181394, intron 1 of 2)	3306.0	NM_181394	69010.0	Mm.2000	NM_181394	ENSMUSG00000035048	Anapc13	1810004D07Rik|APC13|SWM1	anaphase promoting complex subunit 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-111288509-2	chr9	111288410	111288610	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16665.0	NM_175266	77781.0	Mm.209005	NM_175266	ENSMUSG00000046785	Epm2aip1	A930003G21Rik|mKIAA0766	EPM2A (laforin) interacting protein 1	protein-coding	0.898229134159611	1.29105239127921	0.697897864891355	0.677431920936697	0.484488370896935	0.514504067838287	1.34279685721752	0.681027284157765	-0.468339173191093	0.76647989385326	1
Merged-chr12-54414483-2	chr12	54414383	54414583	+	690.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23165.0	NR_033689	665239.0	Mm.26856	NR_033689		Gm7550	EG665239|Gm666	predicted gene 7550	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-160196840-2	chr1	160196740	160196940	+	772.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347121, intron 1 of 2)	RSINE1|SINE|B4	1508.0	NM_001347121	64659.0	Mm.29599	NM_025474	ENSMUSG00000058267	Mrps14	1810032L21Rik|AL022847|Rpms14	mitochondrial ribosomal protein S14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-77034731-4	chr14	77034664	77034864	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172488, intron 3 of 7)	intron (NM_172488, intron 3 of 7)	1853.0	NM_172488	210808.0	Mm.89278	NM_172488	ENSMUSG00000044350	Lacc1	9030625A04Rik	laccase domain containing 1	protein-coding	6.84142553515642	6.51511570204589	6.472389946811	6.30132992391378	5.81395087747748	6.9315544970213	6.94099739468432	6.31075944383717	0.0169185523769224	0.94638347513313	0.998431161219273
Merged-chr15-78383611-3	chr15	78383500	78383700	+	884.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163613, intron 3 of 4)	ORR1F|LTR|ERVL-MaLR	5169.0	NM_001163613	73376.0	Mm.73222	NM_028522	ENSMUSG00000062154	Tex33	1700061J05Rik|Ean57	testis expressed 33	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-74434711-4	chr1	74434599	74434799	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001310662)	TTS (NM_001310662)	25315.0	NM_009509	22349.0	Mm.471601	NM_009509	ENSMUSG00000026175	Vil1	Vil	villin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-103237804-2	chr15	103237704	103237904	+	784.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358950, intron 1 of 4)	B1_Mus1|SINE|Alu	2048.0	NM_001358950	12419.0	Mm.262059	NM_007626	ENSMUSG00000009575	Cbx5	2610029O15Rik|C75991|HP1|Hp1a|Hp1alpha	chromobox 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-111061571-2	chr9	111061471	111061671	+	874.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR41|LTR|ERVL	-4053.0	NM_001302376	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-47777727-2	chr9	47777627	47777827	+	626.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	40481.0	NR_046048	100038460.0	Mm.447649	NR_046048		Gm10677	-	predicted gene 10677	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-135914125-1	chr7	135914025	135914225	+	1000.0	f0_balb.idr	Intergenic	Intergenic	-197746.0	NM_001081117	17345.0	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127119817-2	chr7	127119717	127119917	+	620.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_133686, intron 1 of 3)	intron (NM_133686, intron 1 of 3)	2212.0	NM_133686	67375.0	Mm.26928	NM_133686	ENSMUSG00000030674	Qprt	2410027J01Rik|AI647766|QPRTase	quinolinate phosphoribosyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-6372398-4	chr4	6372262	6372462	+	916.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001098227, intron 1 of 8)	L1MB5|LINE|L1	6682.0	NM_001098227	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96293510-3	chr3	96293387	96293587	+	948.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010186, intron 2 of 5)	intron (NM_010186, intron 2 of 5)	482.0	NM_010186	14129.0	Mm.150	NM_010186	ENSMUSG00000015947	Fcgr1	AI323638|AV092959|CD64|FcgammaRI|IGGHAFC	Fc receptor, IgG, high affinity I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-75962198-4	chr16	75962101	75962301	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38583.0	NR_155447	102632240.0	Mm.417237	NR_155447	ENSMUSG00000087214	Gm15555	-	predicted gene 15555	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-98878032-4	chr10	98877913	98878113	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36629.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-56694088-3	chr14	56693991	56694191	+	627.944458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360072, intron 11 of 13)	LSU-rRNA_Hsa|rRNA|rRNA	6909.0	NR_046209	100503823.0	Mm.474486	NR_046209		Gm16973	-	predicted gene, 16973	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-3081851-4	chr17	3081744	3081944	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_003519, intron 1 of 7)	intron (NR_003519, intron 1 of 7)	2339.0	NR_003519	328734.0	Mm.335641	NR_003519		Pisd-ps2	D030013I16Rik	phosphatidylserine decarboxylase, pseudogene 2	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-40873694-4	chr17	40873574	40873774	+	991.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6884.0	NM_027834	71583.0	Mm.158733	NM_027834	ENSMUSG00000054951	9130008F23Rik	-	RIKEN cDNA 9130008F23 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-79428875-4	chr2	79428775	79428975	+	851.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001048176, exon 1 of 13)	exon (NM_001048176, exon 1 of 13)	113.0	NM_001048176	228094.0	Mm.440704	NM_001033295	ENSMUSG00000075256	Cerkl	Gm1958|Rp26	ceramide kinase-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-71939107-4	chr2	71938998	71939198	+	819.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42117.0	NM_001204167	56508.0	Mm.196153	NM_019688	ENSMUSG00000049044	Rapgef4	1300003D15Rik|5730402K07Rik|6330581N18Rik|EPAC 2|Epac-2|Epac2|mKIAA4040	Rap guanine nucleotide exchange factor (GEF) 4	protein-coding	-0.953721354153451	-1.41025554057125	-1.42001056191158	-1.42802362688808	-1.44024889148474	-1.40814158675276	-1.41780223890411	-1.42658929208844	-2.11310844444413	0.543369238581748	1
Merged-chr18-61401863-4	chr18	61401759	61401959	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1428.0	NM_133249	170826.0	Mm.415302	NM_133249	ENSMUSG00000033871	Ppargc1b	4631412G21Rik|Perc	peroxisome proliferative activated receptor, gamma, coactivator 1 beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171957531-4	chr1	171957430	171957630	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38174.0	NR_151536	105244010.0	Mm.417758	NR_151535		Gm37065	-	predicted gene, 37065	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-57525787-4	chr9	57525693	57525893	+	977.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007747, intron 1 of 4)	ID_B1|SINE|B4	4561.0	NM_007747	12858.0	Mm.273403	NM_007747	ENSMUSG00000000088	Cox5a	AA959768|CcOX	cytochrome c oxidase subunit Va	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-128611859-2	chr4	128611740	128611940	+	792.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-1742.0	NM_177758	269585.0	Mm.153291	NM_177758	ENSMUSG00000061894	Zscan20	C130001F22|Zfp31|Zkscan20	zinc finger and SCAN domains 20	protein-coding	1.45814809684828	0.833426650857294	0.810178185701798	2.16406806300002	1.70345036550745	0.838539929786412	0.815388076389068	2.5094154000121	0.611091940028416	0.668419481739029	0.99330435992635
Merged-chr17-28770152-5	chr17	28770045	28770245	+	736.099976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011950, intron 2 of 11)	CpG-6188	828.0	NM_011950	26415.0	Mm.27970	NM_011950	ENSMUSG00000004864	Mapk13	SAPK4|Serk4	mitogen-activated protein kinase 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-92529500-2	chr2	92529400	92529600	+	753.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62706.0	NR_106080	102466819.0		NR_106080	ENSMUSG00000099223	Mir7221	Gm27378|mmu-mir-7221	microRNA 7221	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-21742781-2	chr14	21742681	21742881	+	994.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013849)	promoter-TSS (NM_013849)	98.0	NM_013849	27389.0	Mm.390674	NM_013849	ENSMUSG00000021768	Dusp13	DUSP13A|DUSP13B|Gm1203|LMW-DSP6|MDSP|TMDP|TS-DSP6	dual specificity phosphatase 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-62106707-4	chr15	62106594	62106794	+	973.008301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132746, intron 1 of 6)	intron (NR_132746, intron 1 of 6)	67437.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-21205240-1	chr16	21205140	21205340	+	884.3333130000001	f0_balb.idr	exon (NM_010143, exon 1 of 16)	exon (NM_010143, exon 1 of 16)	445.0	NM_010143	13845.0	Mm.6972	NM_010143	ENSMUSG00000005958	Ephb3	AW456895|Cek10|Etk2|HEK2|MDK5|Sek4|Tyro6	Eph receptor B3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-98174490-2	chr7	98174390	98174590	+	874.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007602, intron 1 of 12)	intron (NM_007602, intron 1 of 12)	-2704.0	NR_045972	330599.0	Mm.406608	NR_045969		Gm16938	-	predicted gene, 16938	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-50601823-3	chr9	50601723	50601923	+	669.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025848, intron 1 of 3)	MTD|LTR|ERVL-MaLR	2026.0	NM_025848	66925.0	Mm.10406	NM_025848	ENSMUSG00000000171	Sdhd	3110001M13Rik|AVLL5809|C78570|PRO19626	succinate dehydrogenase complex, subunit D, integral membrane protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-122381130-4	chr2	122381015	122381215	+	896.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12197.0	NM_001013829	435684.0	Mm.458215	NM_001013829	ENSMUSG00000033256	Shf	-	Src homology 2 domain containing F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-10289874-2	chr3	10289774	10289974	+	603.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_029310, intron 1 of 5)	intron (NM_029310, intron 1 of 5)	11309.0	NM_001357159	75497.0	Mm.47052	NM_029310	ENSMUSG00000027530	Fabp12	1700008G05Rik	fatty acid binding protein 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122985502-3	chr8	122985411	122985611	+	593.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 1 of 12)	intron (NM_001081379, intron 1 of 12)	56773.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-63429897-2	chr4	63429797	63429997	+	955.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001008791, intron 7 of 12)	intron (NM_001008791, intron 7 of 12)	-26452.0	NM_001045514	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94223857-3	chr10	94223753	94223953	+	961.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24844.0	NM_025551	66414.0	Mm.27886	NM_025551	ENSMUSG00000020022	Ndufa12	2410011G03Rik|AW112974	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12	protein-coding	4.74714400438849	4.50157365183074	3.52229855717935	2.48331870402648	4.66072877036038	4.85355283392603	4.39197263476946	2.83658178412231	0.382882857056191	0.519217924301541	0.947641799425091
Merged-chr16-14123372-3	chr16	14123307	14123507	+	844.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081154, intron 21 of 26)	intron (NM_001081154, intron 21 of 26)	35867.0	NM_001081154	223989.0	Mm.85442	NM_001081154	ENSMUSG00000060657	Marf1	4921513D23Rik|BC031575|C87306|E030019O05|Lkap|mKIAA0430	meiosis regulator and mRNA stability 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-64197852-4	chr1	64197740	64197940	+	937.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-76451.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105277892-2	chr8	105277792	105277992	+	739.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030152, intron 1 of 3)	B1_Mus1|SINE|Alu	1445.0	NM_030152	78688.0	Mm.475715	NM_030152	ENSMUSG00000014776	Nol3	ARC|B430311C09Rik|MYC|NOP|Nop30	nucleolar protein 3 (apoptosis repressor with CARD domain)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-46976795-1	chr14	46976695	46976895	+	554.0	f1_c57bl6.idr	intron (NM_001037221, intron 2 of 12)	intron (NM_001037221, intron 2 of 12)	-21867.0	NR_105813	102465206.0		NR_105813	ENSMUSG00000099036	Mir378c	Gm27930|mmu-mir-378c	microRNA 378c	ncRNA	2.22096617476964	0.956936481176315	1.77797780079475	0.902978997403262	0.867071599084	2.98201498933476	1.93684962535419	1.39060194014819	1.10498380217031	0.380595106511558	0.872285472406141
Merged-chr1-53855909-4	chr1	53855786	53855986	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001883, intron 19 of 28)	intron (NM_001001883, intron 19 of 28)	6462.0	NR_106149	102465783.0		NR_106149	ENSMUSG00000098443	Mir7681	Gm27806|mmu-mir-7681	microRNA 7681	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-164067284-3	chr2	164067207	164067407	+	930.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291155, intron 1 of 6)	intron (NM_001291155, intron 1 of 6)	3795.0	NM_025996	67145.0	Mm.23173	NM_025996	ENSMUSG00000018322	Tomm34	2610100K07Rik|TOM34	translocase of outer mitochondrial membrane 34	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-88910853-2	chr6	88910753	88910953	+	909.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_011906, exon 11 of 12)	exon (NM_011906, exon 11 of 12)	8602.0	NM_011906	24100.0	Mm.284480	NM_011906	ENSMUSG00000002871	Tpra1	40kDa|Gpr175|Tpra40	transmembrane protein, adipocyte asscociated 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-154542239-2	chr2	154542139	154542339	+	544.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6665.0	NM_029305	75480.0	Mm.440434	NM_029305	ENSMUSG00000038523	1700003F12Rik	-	RIKEN cDNA 1700003F12 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-107830033-2	chr13	107829899	107830099	+	850.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 2 of 14)	intron (NM_145456, intron 2 of 14)	60065.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	2.2021253722437	2.60771888206321	3.2171026299927	1.25637699220407	2.22177647242204	1.33560507496566	2.90445957284512	2.08091827167248	-0.517961437459335	0.603354135345427	0.973569682278458
Merged-chr17-4778351-3	chr17	4778245	4778445	+	718.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	143365.0	NR_130984	75117.0	Mm.429393	NR_130984		4930517M08Rik	-	RIKEN cDNA 4930517M08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-77786963-2	chr18	77786863	77787063	+	924.1666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7587.0	NM_013831	19201.0	Mm.57174	NM_013831	ENSMUSG00000025429	Pstpip2	MAYP|cmo	proline-serine-threonine phosphatase-interacting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-22869524-2	chr8	22869424	22869624	+	727.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081149, intron 3 of 17)	B3|SINE|B2	9985.0	NM_001081149	244349.0	Mm.182776	NM_001081149	ENSMUSG00000031540	Kat6a	1500036M03|9930021N24Rik|MOZ|Myst3|Zfp220	K(lysine) acetyltransferase 6A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-51849708-2	chr13	51849608	51849808	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3033.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-12668010-3	chr15	12667900	12668100	+	697.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-75444.0	NM_001081064	68070.0	Mm.423205	NM_001081064	ENSMUSG00000022197	Pdzd2	4930537L06Rik|A930022H17Rik|Gm21706|Gm82|Pdzk3|mKIAA0300	PDZ domain containing 2	protein-coding	1.70197857127101	1.31114096236527	1.66764474520509	0.859935246614594	1.87152067680967	0.891826480703399	0.87595432416356	1.62397425857206	-0.0887033108609098	0.948930496462949	0.998431161219273
Merged-chr11-31671937-4	chr11	31671832	31672032	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024919)	promoter-TSS (NM_001024919)	-70.0	NM_001024919	69556.0	Mm.34183	NM_001024919	ENSMUSG00000044502	Bod1	2310022M17Rik|BOD2.1|Fam44b	biorientation of chromosomes in cell division 1	protein-coding	5.8352062941996	6.44601685227367	6.31114897578935	6.03095347869269	6.43730270807849	6.19503560858946	6.38270587775262	6.62702217734329	0.276879696268535	0.210457151533447	0.699722400913994
Merged-chr1-64121721-4	chr1	64121636	64121836	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033563)	promoter-TSS (NM_033563)	-347.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-88272626-4	chr8	88272541	88272741	+	894.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007406, intron 1 of 27)	CpG	238.0	NM_007406	11513.0	Mm.288206	NM_007406	ENSMUSG00000031659	Adcy7	AA407758	adenylate cyclase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-99376600-2	chr5	99376500	99376700	+	969.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 3 of 3)	MIRb|SINE|MIR	-123673.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-103010168-1	chr2	103010068	103010268	+	614.0	f1_c57bl6.idr	Intergenic	Intergenic	63345.0	NM_175094	27402.0	Mm.315011	NM_175094	ENSMUSG00000010914	Pdhx	AI481367|E3bp|Pdx1	pyruvate dehydrogenase complex, component X	protein-coding	2.43625097466092	2.0325811458066	1.81619488922204	2.49874524097155	1.94081439713617	1.23580790633046	2.32972094760223	1.18443900282942	-1.16046324697742	0.271975789224902	0.775344254503495
Merged-chr18-23875484-2	chr18	23875384	23875584	+	792.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162941, intron 5 of 7)	intron (NM_001162941, intron 5 of 7)	71514.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-48884631-2	chr13	48884531	48884731	+	997.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033268, intron 17 of 17)	intron (NM_001033268, intron 17 of 17)	-13746.0	NM_011078	18676.0	Mm.486213	NM_011078	ENSMUSG00000038025	Phf2	GRC5	PHD finger protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83742157-2	chr11	83742057	83742257	+	732.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4783.0	NM_183249	66107.0	Mm.902	NM_183249	ENSMUSG00000051748	Wfdc21	1100001G20Rik|Wdnm1-like	WAP four-disulfide core domain 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16120064-4	chr7	16119892	16120092	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_133727, exon 1 of 12)	exon (NM_133727, exon 1 of 12)	116.0	NM_133727	70394.0	Mm.41101	NM_133727	ENSMUSG00000006021	Kptn	2310042D10Rik|2E4|C030013F01Rik	kaptin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-82375452-4	chr3	82375369	82375569	+	895.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356457, intron 6 of 13)	intron (NM_001356457, intron 6 of 13)	17282.0	NM_001356457	213582.0	Mm.271269	NM_001081230	ENSMUSG00000033900	Map9	5033421J10Rik|5330427D05Rik|ASAP|Mtap9	microtubule-associated protein 9	protein-coding	1.35607578318517	1.66889407417356	2.24106635755278	1.56832632127879	1.5029537637974	1.8247372424194	1.76180731224803	1.0418992424514	-0.593773200352599	0.597748606776389	0.971981563164
Merged-chr13-8679385-3	chr13	8679288	8679488	+	869.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110345, intron 4 of 10)	intron (NR_110345, intron 4 of 10)	191656.0	NM_001039389	207615.0	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-78144327-4	chr10	78144235	78144435	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25433.0	NM_138601	28295.0	Mm.268691	NM_138601	ENSMUSG00000053329	D10Jhu81e	C21orf33|ES1	DNA segment, Chr 10, Johns Hopkins University 81 expressed	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-55431102-3	chr6	55431014	55431214	+	964.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-20864.0	NM_001025372	11517.0	Mm.44245	NM_007407	ENSMUSG00000029778	Adcyap1r1	2900024I10Rik|AI846590|PAC1|PAC1R|PACAP1-R	adenylate cyclase activating polypeptide 1 receptor 1	protein-coding	4.04342461220834	2.92622414837162	4.20222522533513	3.25656246187365	5.25880578650741	5.65025244060992	4.70324218214022	4.22397636998967	1.70661776199438	0.000269585042521447	0.00678562518917271
Merged-chr2-154568424-2	chr2	154568324	154568524	+	729.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007891, intron 1 of 6)	intron (NM_007891, intron 1 of 6)	1002.0	NM_001291105	13555.0	Mm.18036	NM_007891	ENSMUSG00000027490	E2f1	E2F-1|Tg(Wnt1-cre)2Sor|mKIAA4009	E2F transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72126439-2	chr6	72126339	72126539	+	745.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011375, intron 1 of 6)	intron (NM_011375, intron 1 of 6)	-3242.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5252011-2	chr17	5251911	5252111	+	677.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 5 of 19)	intron (NM_001085355, intron 5 of 19)	166756.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-8520618-4	chr10	8520449	8520649	+	784.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1724.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-115611695-4	chr8	115611614	115611814	+	930.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	95180.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-9547029-2	chr1	9546929	9547129	+	669.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175236)	promoter-TSS (NM_175236)	-919.0	NM_175236	76187.0	Mm.28514	NM_175236	ENSMUSG00000025911	Adhfe1	6330565B14Rik|AI043035|Adh8|HOT	alcohol dehydrogenase, iron containing, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-59762713-2	chr9	59762613	59762813	+	648.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_173018, intron 1 of 43)	B1_Mur4|SINE|Alu	11539.0	NM_173018	270163.0	Mm.249545	NM_173018	ENSMUSG00000039585	Myo9a	4732465J09Rik|C130068I12Rik|C230003M11	myosin IXa	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-65717709-4	chr17	65717627	65717827	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133685, intron 2 of 6)	intron (NM_133685, intron 2 of 6)	55025.0	NM_133685	106572.0	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-75842998-2	chr15	75842898	75843098	+	627.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	-1090.0	NM_172121	223642.0	Mm.209800	NM_172121	ENSMUSG00000075600	Zc3h3	BC049953|Kiaa0150|Smicl|Zc3hdc3	zinc finger CCCH type containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-33001850-3	chr13	33001746	33001946	+	930.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB7|LINE|L1	-2695.0	NM_009256	20723.0	Mm.245041	NM_009256	ENSMUSG00000045827	Serpinb9	BB283241|CAP-3|CAP3|PI-9|PI9|Spi6|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69622852-2	chr11	69622752	69622952	+	794.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026991, intron 3 of 5)	intron (NM_026991, intron 3 of 5)	800.0	NM_001356468	69215.0	Mm.340410	NM_026991	ENSMUSG00000069835	Sat2	2610016A03Rik|SSAT-2|SSAT2	spermidine/spermine N1-acetyl transferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-119016017-4	chr2	119015897	119016097	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13396.0	NM_199310	269336.0	Mm.292465	NM_199310	ENSMUSG00000039983	Ccdc32	Gm631	coiled-coil domain containing 32	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-62681173-4	chr2	62681061	62681261	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145523, intron 3 of 7)	HAL1|LINE|L1	16834.0	NM_145523	227960.0	Mm.219877	NM_145523	ENSMUSG00000026893	Gca	5133401E04Rik|AI573844	grancalcin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-44956428-4	chr2	44956315	44956515	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	66762.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-73047190-4	chr2	73047075	73047275	+	935.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66729.0	NM_001018042	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-106310047-4	chr9	106309919	106310119	+	993.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027354, intron 9 of 10)	intron (NM_027354, intron 9 of 10)	28958.0	NM_027354	70235.0	Mm.23054	NM_027354	ENSMUSG00000023345	Poc1a	2510040D07Rik|Wdr51a|cha	POC1 centriolar protein A	protein-coding	4.26261258014572	3.88771741195456	3.57598874892798	3.56097058762931	4.97675481888046	4.07685979949783	4.74779914921686	4.35604972429836	0.964349612347009	0.0273818724068372	0.222746075916148
Merged-chr1-177984488-2	chr1	177984388	177984588	+	845.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13A1|LTR|ERVK	-6910.0	NR_155538	545391.0	Mm.442974	NM_001034899	ENSMUSG00000091476	Gm16432	EG545391|EG666250	predicted gene 16432	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-44425103-3	chr10	44425012	44425212	+	749.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	AmnSINE1|SINE|Deu	33636.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-4390617-2	chr13	4390517	4390717	+	824.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43726.0	NM_030611	83702.0	Mm.196666	NM_030611	ENSMUSG00000021210	Akr1c6	3alpha-HSD|Akr1c1|Hsd17b5	aldo-keto reductase family 1, member C6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-88869634-3	chr11	88869546	88869746	+	658.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_126433, intron 3 of 4)	intron (NR_126433, intron 3 of 4)	-5060.0	NM_001042541	11640.0	Mm.2969	NM_009648	ENSMUSG00000018428	Akap1	AKAP121|AKAP84|Akap|C76494|C81186|DAKAP1|S-AKAP84	A kinase (PRKA) anchor protein 1	protein-coding	1.78313466843186	2.4888397265282	1.56275016185612	2.51189400278946	1.92565856742876	2.28186616928234	2.07957685615424	2.14061762363372	-0.128446894652171	0.88833987678191	0.998431161219273
Merged-chr11-117178114-2	chr11	117178014	117178214	+	764.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-21547.0	NM_001113486	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3739276-4	chr12	3739164	3739364	+	788.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162465, intron 12 of 17)	intron (NM_001162465, intron 12 of 17)	-67716.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-8709277-4	chr13	8709181	8709381	+	898.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110345, intron 6 of 10)	intron (NR_110345, intron 6 of 10)	161763.0	NM_001039389	207615.0	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-48905702-2	chr7	48905602	48905802	+	881.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24106.0	NM_001360812	108961.0	Mm.240566	NM_001013368	ENSMUSG00000046179	E2f8	4432406C08Rik|AA410048	E2F transcription factor 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-47259133-4	chr14	47259041	47259241	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360532, intron 13 of 24)	B1_Mm|SINE|Alu	17716.0	NM_001360532	218973.0	Mm.265615	NM_172598	ENSMUSG00000037572	Wdhd1	A630092E18|AND-1|D630024B06Rik	WD repeat and HMG-box DNA binding protein 1	protein-coding	3.92728616903424	3.67197279318267	2.93341044908706	3.31089539046944	3.54852294214338	2.79783140066605	1.94037369215029	2.61144080377651	-1.06139337906427	0.114928172889766	0.531605896377922
Merged-chr12-85604080-1	chr12	85603980	85604180	+	540.0	f1_c57bl6.idr	intron (NM_001205053, intron 1 of 3)	intron (NM_001205053, intron 1 of 3)	4062.0	NM_001205053	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132535603-4	chr4	132535500	132535700	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172400)	promoter-TSS (NM_172400)	41.0	NM_172400	68598.0	Mm.29685	NM_172400	ENSMUSG00000054405	Dnajc8	1110021D09Rik|2010009J04Rik|AL024084|AU019262|AU044514	DnaJ heat shock protein family (Hsp40) member C8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-90623705-4	chr15	90623604	90623804	+	957.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357979, intron 3 of 18)	intron (NM_001357979, intron 3 of 18)	55684.0	NM_025815	66871.0	Mm.290991	NM_025815	ENSMUSG00000052560	Cpne8	1200003E11Rik|1500031E20Rik	copine VIII	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-99422466-3	chr10	99422379	99422579	+	664.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	159248.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-3335402-2	chr18	3335302	3335502	+	559.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110851, intron 1 of 4)	intron (NM_001110851, intron 1 of 4)	-1014.0	NR_033457	633947.0	Mm.461446	NR_033457	ENSMUSG00000097746	Gm6225	EG621440	predicted gene 6225	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-85434080-4	chr6	85433989	85434189	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144918, intron 1 of 12)	intron (NM_144918, intron 1 of 12)	2113.0	NM_144918	232187.0	Mm.219946	NM_144918	ENSMUSG00000033706	Smyd5	AW536703|NN8-4AG|Rai15|Rrg1	SET and MYND domain containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-103693346-3	chr5	103693216	103693416	+	719.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37584.0	NM_001163550	74218.0	Mm.159141	NM_028824	ENSMUSG00000029320	1700016H13Rik	-	RIKEN cDNA 1700016H13 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-41300092-2	chr10	41299992	41300192	+	676.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133999, intron 1 of 22)	RLTR25B|LTR|ERVK	3149.0	NM_133999	103199.0	Mm.277242	NM_133999	ENSMUSG00000038417	Fig4	A530089I17Rik|AI326867|Sac3	FIG4 phosphoinositide 5-phosphatase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116319207-4	chr11	116319083	116319283	+	976.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12433.0	NM_001347636	53413.0	Mm.22530	NM_016857	ENSMUSG00000020792	Exoc7	Exo70|sec70	exocyst complex component 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-11676174-4	chr16	11676086	11676286	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028964, intron 18 of 20)	intron (NM_028964, intron 18 of 20)	-103516.0	NR_126430	73761.0	Mm.39183	NR_126430		4833415N18Rik	-	RIKEN cDNA 4833415N18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70595778-2	chr8	70595679	70595879	+	753.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_023627, exon 6 of 11)	exon (NM_023627, exon 6 of 11)	1298.0	NM_023627	71780.0	Mm.29357	NM_023627	ENSMUSG00000019139	Isyna1	1300017C10Rik|AU018670	myo-inositol 1-phosphate synthase A1	protein-coding	0.253094260436509	0.755241026175474	0.265928603339703	0.67882350961438	0.727510362029338	0.273600248937659	0.267308871082807	0.791424233194404	0.193392891959911	0.920638569605338	1
Merged-chr11-59306955-3	chr11	59306858	59307058	+	610.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_139298)	promoter-TSS (NM_139298)	28.0	NM_139298	216795.0	Mm.218794	NM_139298	ENSMUSG00000000126	Wnt9a	Wnt14	wingless-type MMTV integration site family, member 9A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-72408451-3	chr9	72408340	72408540	+	662.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_152222)	TTS (NR_152222)	1427.0	NR_152222	100502819.0	Mm.392319	NR_152222	ENSMUSG00000097211	BC065403	A930005F02Rik	cDNA sequence BC065403	ncRNA	0.655919854771728	1.82073359900465	1.06898418541979	1.30039327339485	0.987702770361222	1.28001561379974	0.90128439410212	0.675126931870002	-1.2807507121024	0.371280009670506	0.863911489096448
Merged-chr15-66730151-1	chr15	66730051	66730251	+	565.0	f1_balb.idr	intron (NM_009375, intron 27 of 47)	MLT1H|LTR|ERVL-MaLR	59381.0	NM_009375	21819.0	Mm.441333	NM_009375	ENSMUSG00000053469	Tg	Tgn|cog	thyroglobulin	protein-coding	1.00857951800479	1.30306670513721	0.692011004701539	1.45561871957947	0.639884522171636	0.501639030788738	0.49119372610049	0.482169472179131	-3.85502446276856	0.0217482566998901	0.189541586357347
Merged-chr10-68141783-3	chr10	68141693	68141893	+	920.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023598, intron 4 of 9)	intron (NM_023598, intron 4 of 9)	136933.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	1.42409360012093	1.61546660314117	1.2681425415085	2.36470739812502	2.7227992182901	2.89053147904484	3.62932030480669	2.37818217233711	2.6717714219792	0.00337820036762065	0.0494422413246056
Merged-chr3-89910138-4	chr3	89910040	89910240	+	829.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010559, intron 1 of 9)	intron (NM_010559, intron 1 of 9)	3056.0	NM_001310676	16194.0	Mm.2856	NM_010559	ENSMUSG00000027947	Il6ra	CD126|IL-6R|IL-6R-alpha|IL-6RA|Il6r	interleukin 6 receptor, alpha	protein-coding	-0.884151943040017	-0.86624766296593	-0.874346483115882	-0.877999885265216	-0.883229761593409	-0.862865047594633	0.225856448367219	-0.877358843395171	3.5762970005776	0.2292649794022	1
Merged-chr5-125354200-1	chr5	125354100	125354300	+	553.0	f1_balb.idr	Intergenic	Intergenic	-13106.0	NM_001205083	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	-0.271160619403945	0.509497005587349	-0.26016458078335	-0.264285344268591	0.424347871796482	-0.253650343796085	-0.258989360163745	-0.263564352362486	-0.229904069499699	0.928221362826965	1
Merged-chr4-95196396-2	chr4	95196296	95196496	+	614.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-144174.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-69077432-4	chr2	69077326	69077526	+	934.7666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347161, intron 8 of 10)	intron (NM_001347161, intron 8 of 10)	-58374.0	NM_181547	329416.0	Mm.90047	NM_181547	ENSMUSG00000034738	Nostrin	Daip2|mDaIP2	nitric oxide synthase trafficker	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-28540945-2	chr2	28540845	28541045	+	988.7000119999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145836, intron 2 of 17)	intron (NM_001145836, intron 2 of 17)	7481.0	NM_001145836	19730.0	Mm.5236	NM_009058	ENSMUSG00000026821	Ralgds	Gnds|Rgds|mKIAA1308	ral guanine nucleotide dissociation stimulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-19830735-1	chr13	19830635	19830835	+	654.5	f0_balb.idr	Intergenic	Intergenic	-6478.0	NM_181754	353346.0	Mm.239268	NM_181754	ENSMUSG00000053101	Gpr141	PGR13	G protein-coupled receptor 141	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-115407729-3	chr8	115407630	115407830	+	852.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	299164.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-36049901-2	chr16	36049801	36050001	+	884.875	f1_balb.idr|f1_c57bl6.idr	exon (NM_027342, exon 3 of 5)	exon (NM_027342, exon 3 of 5)	8711.0	NM_027113	69544.0	Mm.37802	NM_027113	ENSMUSG00000034379	Wdr5b	2310009C03Rik|AI606931	WD repeat domain 5B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-135616924-3	chr3	135616818	135617018	+	639.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008689, intron 8 of 24)	Lx7|LINE|L1	74629.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	1.96180118310101	1.55887460337505	1.0951392220078	1.97763993268041	1.78893267706018	1.88611969620387	1.09986536696253	2.25370565572483	0.361392793680306	0.754324463854801	0.998431161219273
Merged-chr8-36016542-1	chr8	36016442	36016642	+	775.666687	f0_balb.idr	Intergenic	Intergenic	-78286.0	NM_172911	244418.0	Mm.244971	NM_172911	ENSMUSG00000050271	Prag1	9830148H23|D8Ertd82e|NACK|Sgk223|mFLJ00269	PEAK1 related kinase activating pseudokinase 1	protein-coding	0.446460050941969	0.478268482409016	1.10878738101491	0.459973639273391	0.888936762271209	1.40236062702137	1.12128565139362	0.46138120644831	1.75972781682278	0.312551933867007	0.813919426103969
Merged-chr8-3387484-4	chr8	3387385	3387585	+	884.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033378, intron 7 of 10)	intron (NM_001033378, intron 7 of 10)	-5523.0	NM_133962	102098.0	Mm.170461	NM_133962	ENSMUSG00000004568	Arhgef18	AI467246|D030053O22Rik	rho/rac guanine nucleotide exchange factor (GEF) 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-4539679-4	chr12	4539595	4539795	+	922.80835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	15582.0	NR_136891	102634330.0	Mm.402324	NR_136891	ENSMUSG00000112422	Gm31938	-	predicted gene, 31938	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-60735180-2	chr14	60735080	60735280	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310594, intron 1 of 9)	intron (NM_001310594, intron 1 of 9)	2276.0	NM_001310594	219140.0	Mm.149776	NM_001033272	ENSMUSG00000021990	Spata13	C79050|ESTM11|X83327|mFLJ00298	spermatogenesis associated 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-152904563-2	chr2	152904463	152904663	+	743.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6789.0	NM_001081044	228785.0	Mm.250604	NM_001081044	ENSMUSG00000027470	Mylk2	9830004H17Rik|BB138278	myosin, light polypeptide kinase 2, skeletal muscle	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-28732397-3	chr12	28732289	28732489	+	940.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161410, intron 3 of 11)	intron (NM_001161410, intron 3 of 11)	18005.0	NM_001161410	217449.0	Mm.132006	NM_178811	ENSMUSG00000020628	Trappc12	CGI-87|D930014A20Rik|Ttc15	trafficking protein particle complex 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-157070483-4	chr2	157070279	157070479	+	919.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164663, intron 1 of 14)	intron (NM_001164663, intron 1 of 14)	8886.0	NM_001164663	320706.0	Mm.79466	NM_001164663	ENSMUSG00000055485	Soga1	9830001H06Rik|AI426038|D430036N24Rik|Soga	suppressor of glucose, autophagy associated 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-32561789-6	chr11	32561697	32561897	+	965.633301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 2 of 18)	intron (NM_009288, intron 2 of 18)	28531.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-14271348-2	chr2	14271248	14271448	+	808.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_008625, exon 9 of 30)	exon (NM_008625, exon 9 of 30)	10345.0	NR_030609	100124488.0		NR_030609	ENSMUSG00000077897	Mir511	Mirn511|mir-511|mmu-mir-511	microRNA 511	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-105631605-2	chr7	105631505	105631705	+	655.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_018880, intron 1 of 11)	Lx9|LINE|L1	1966.0	NM_018880	55992.0	Mm.29290	NM_018880	ENSMUSG00000036989	Trim3	BERP1|HAC1|Rnf22	tripartite motif-containing 3	protein-coding	-1.7024385483431	-1.81249224917775	-1.82134771053534	-1.82862185015837	-1.70038292649591	-1.81057323376012	-1.81934302819017	-1.82731978264371	0.0376840119903864	0.991491645451152	1
Merged-chr4-33310258-4	chr4	33310165	33310365	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011884)	promoter-TSS (NM_011884)	-46.0	NM_011884	24018.0	Mm.240024	NM_011884	ENSMUSG00000028274	Rngtt	AU020997|HCE|MCE1	RNA guanylyltransferase and 5'-phosphatase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-45088006-4	chr13	45087917	45088117	+	991.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-85921.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-80553833-4	chr17	80553741	80553941	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360144, intron 3 of 9)	intron (NM_001360144, intron 3 of 9)	9993.0	NM_001033443	381113.0	Mm.329216	NM_001033443	ENSMUSG00000033966	Cdkl4	AU067824|Gm942	cyclin-dependent kinase-like 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-112581289-4	chr12	112581177	112581377	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7507.0	NM_198411	70435.0	Mm.250193	NM_198411	ENSMUSG00000037679	Inf2	2610204M08Rik|AA589465|AW125550|EG629699	inverted formin, FH2 and WH2 domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-170202168-4	chr2	170202075	170202275	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59500.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-72980029-4	chr16	72979923	72980123	+	909.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019413, intron 15 of 28)	intron (NM_019413, intron 15 of 28)	316874.0	NM_019413	19876.0	Mm.310772	NM_019413	ENSMUSG00000022883	Robo1	AW494633|AW742721|DUTT1|Gm310	roundabout guidance receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-56498563-1	chr18	56498463	56498663	+	560.0	f1_c57bl6.idr	intron (NM_001360917, intron 13 of 13)	intron (NM_001360917, intron 13 of 13)	-39576.0	NR_106160	102465790.0		NR_106160	ENSMUSG00000099196	Mir1258	Gm27371|mmu-mir-1258	microRNA 1258	ncRNA	-1.32440223303897	-1.29339468673833	-0.717877708899544	-1.31276353204239	-1.32392690786997	-1.29109028300231	-1.30162128075409	-1.31119997543009	-2.49510383040271	0.470258445164311	1
Merged-chr19-41377210-2	chr19	41377110	41377310	+	733.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 1 of 16)	MIR3|SINE|MIR	7860.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-13980470-4	chr1	13980371	13980571	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-193542.0	NR_004447	433273.0	Mm.304088	NR_004447	ENSMUSG00000097711	Gm5523	EG433273	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-124292997-1	chr8	124292897	124293097	+	659.0	f1_c57bl6.idr	intron (NM_139272, intron 1 of 15)	intron (NM_139272, intron 1 of 15)	61603.0	NM_139272	108148.0	Mm.33808	NM_139272	ENSMUSG00000089704	Galnt2	AI480629	polypeptide N-acetylgalactosaminyltransferase 2	protein-coding	-0.599331871059574	-0.947800116451024	-0.95790711855856	-0.545752331378273	-0.96275671057501	-0.945273172251724	-0.956821167625019	-0.959569917902332	-2.82233379114307	0.363876369831273	1
Merged-chr18-82475126-4	chr18	82475078	82475278	+	945.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010777)	promoter-TSS (NM_010777)	55.0	NM_010777	17196.0	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72166906-2	chr6	72166806	72167006	+	645.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-43709.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-144291403-2	chr2	144291303	144291503	+	570.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	20499.0	NM_001355688	74528.0	Mm.386817	NM_028984	ENSMUSG00000027424	Mgme1	8430406I07Rik|AI426476	mitochondrial genome maintenance exonuclease 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75168932-8	chr11	75168809	75169009	+	986.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001098203)	promoter-TSS (NM_001098203)	-757.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-41507096-4	chr4	41506988	41507188	+	974.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253788, intron 4 of 5)	CpG	676.0	NM_028624	73721.0	Mm.45614	NM_028624	ENSMUSG00000028441	1110017D15Rik	Cbe1|Smrp1	RIKEN cDNA 1110017D15 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-73054253-4	chr2	73054153	73054353	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73807.0	NM_001018042	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31173529-2	chr14	31173429	31173629	+	963.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_022656, intron 18 of 20)	intron (NM_022656, intron 18 of 20)	-4888.0	NM_138672	192187.0	Mm.220821	NM_138672	ENSMUSG00000042286	Stab1	FEEL-1|FELE-1|MFEEL-1|MS-1|STAB-1|mKIAA0246	stabilin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-119089559-2	chr12	119089459	119089659	+	749.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-123138.0	NM_029961	77706.0	Mm.261496	NM_029961	ENSMUSG00000072791	Abcb5	9230106F14Rik	ATP-binding cassette, sub-family B (MDR/TAP), member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120374993-2	chr11	120374893	120375093	+	552.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027980, intron 4 of 9)	intron (NM_027980, intron 4 of 9)	3753.0	NM_027980	71885.0	Mm.274890	NM_027980	ENSMUSG00000025384	Faap100	2310003H01Rik	Fanconi anemia core complex associated protein 100	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4896819-4	chr16	4896726	4896926	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357062, intron 1 of 17)	intron (NM_001357062, intron 1 of 17)	10726.0	NM_001357061	17237.0	Mm.291326	NM_029657	ENSMUSG00000022517	Mgrn1	2610042J20Rik|mKIAA0544|md|nc	mahogunin, ring finger 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-152800239-3	chr3	152800144	152800344	+	969.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	86144.0	NM_025662	329777.0	Mm.331447	NM_025662	ENSMUSG00000039047	Pigk	3000001O05Rik|Gm38470|PIG-K	phosphatidylinositol glycan anchor biosynthesis, class K	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27587439-1	chr17	27587339	27587539	+	735.5	f1_c57bl6.idr	intron (NM_001291046, intron 2 of 4)	intron (NM_001291046, intron 2 of 4)	-21712.0	NM_001002895	106672.0	Mm.61488	NM_001002895	ENSMUSG00000062753	AI413582	AI854251|Smim29	expressed sequence AI413582	protein-coding	3.22827751669692	3.02938474401925	2.36417365309036	2.84946956459381	2.32865336696146	2.10876445923876	2.75705219925731	2.56500840139237	-0.893980404034907	0.222157260122664	0.713583934962101
Merged-chr2-6716759-3	chr2	6716607	6716807	+	718.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110232, intron 4 of 15)	intron (NM_001110232, intron 4 of 15)	4955.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28488026-2	chr17	28487926	28488126	+	939.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1877.0	NM_010220	14229.0	Mm.276405	NM_010220	ENSMUSG00000024222	Fkbp5	D17Ertd592e|Dit1|FKBP-5|FKBP51	FK506 binding protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-103345004-6	chr11	103344828	103345028	+	915.297241	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133715)	promoter-TSS (NM_133715)	175.0	NR_045346	653030.0	Mm.440684	NR_045346	ENSMUSG00000085887	Arhgap27os3	F830206d12rik|Gm11648	Rho GTPase activating protein 27, opposite strand 3	ncRNA	3.3082790147781	2.8800644507919	3.08004222171994	2.13550139464763	1.85000428350992	1.54998817887182	3.54641154274487	3.49937705429042	0.00767520977972218	0.992722864306638	0.998431161219273
Merged-chr15-73614856-2	chr15	73614756	73614956	+	584.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033219, intron 1 of 7)	intron (NM_001033219, intron 1 of 7)	2468.0	NM_001357747	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-124442802-2	chr9	124442702	124442902	+	764.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19015.0	NR_015516	75135.0	Mm.476814	NR_015516		4930526I15Rik	1600027J15Rik	RIKEN cDNA 4930526I15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-133583039-4	chr3	133582843	133583043	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38553.0	NM_001346736	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-47263484-1	chr4	47263384	47263584	+	543.0	f1_c57bl6.idr	intron (NM_009928, intron 11 of 39)	intron (NM_009928, intron 11 of 39)	55472.0	NM_009928	12819.0	Mm.233547	NM_009928	ENSMUSG00000028339	Col15a1	-	collagen, type XV, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-54985142-2	chr11	54985042	54985242	+	729.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001110211, exon 22 of 25)	exon (NM_001110211, exon 22 of 25)	-22202.0	NM_001271455	57783.0	Mm.259671	NM_021327	ENSMUSG00000020400	Tnip1	ABIN|ABIN-1|ABIN1|AU018810|Naf1|Nef|VAN	TNFAIP3 interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-52502370-4	chr3	52502286	52502486	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14578.0	NR_153344	102631981.0	Mm.394225	NR_153344		Gm30173	-	predicted gene, 30173	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-157017685-4	chr1	157017577	157017777	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-78051.0	NM_001357391	78255.0	Mm.28376	NM_023884	ENSMUSG00000026594	Ralgps2	1810020P17Rik|2210408F11Rik|4921528G01Rik|9130014M22Rik|AU043409|AW046161	Ral GEF with PH domain and SH3 binding motif 2	protein-coding	2.96209084139346	2.21456614110753	3.08928873373706	1.26845320982265	2.51218899761892	2.23178033872243	2.29526069058237	1.27396804531337	-0.866346017001019	0.382927554188208	0.873896423120109
Merged-chr3-9003259-1	chr3	9003159	9003359	+	562.0	f0_balb.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	945.0	NM_001357073	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-57800427-4	chr18	57800345	57800545	+	929.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-8112.0	NR_152225	100503033.0	Mm.381112	NR_152224		Gm19519	-	predicted gene, 19519	ncRNA	2.41303462825374	1.34672244943731	1.81716775415762	2.42063834159667	1.9973024178001	1.09353491386508	1.31556806097916	1.28023516527174	-1.69479546215475	0.132107350383571	0.56910731882715
Merged-chr5-125381689-2	chr5	125381589	125381789	+	847.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8328.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-109832779-6	chr9	109832645	109832845	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018757)	promoter-TSS (NM_018757)	-49.0	NM_018757	54369.0	Mm.12951	NM_018757	ENSMUSG00000032478	Nme6	nm23-M6	NME/NM23 nucleoside diphosphate kinase 6	protein-coding	4.70151906776602	3.63306866702687	4.67186075606296	3.58608036860063	4.85662514613091	3.66151319861183	5.04333241633029	4.43915357701627	0.432641845554177	0.354785794386024	0.853449831367998
Merged-chr18-35058542-3	chr18	35058442	35058642	+	964.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60370.0	NM_009818	12385.0	Mm.18962	NM_009818	ENSMUSG00000037815	Ctnna1	2010010M04Rik|AA517462|AI988031|Catna1	catenin (cadherin associated protein), alpha 1	protein-coding	3.25890211400687	3.25272291467559	1.9411686632249	3.19350020483598	2.26274480044577	1.78703933886199	1.72715195056795	2.99449858874713	-1.34302832155141	0.104022970782701	0.502812729289763
Merged-chr4-64497908-4	chr4	64497812	64498012	+	806.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	SYNREP_MM|Satellite|Satellite	-221309.0	NR_151546	102633436.0	Mm.411637	NR_151546		Gm11217	-	predicted gene 11217	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-130824951-2	chr4	130824851	130825051	+	630.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011520, exon 5 of 5)	3' UTR (NM_011520, exon 5 of 5)	32414.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-74601375-4	chr17	74601294	74601494	+	909.0750119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007566, intron 19 of 72)	intron (NM_007566, intron 19 of 72)	73099.0	NM_007566	12211.0	Mm.442564	NM_007566	ENSMUSG00000024073	Birc6	A430032G04Rik|A430040A19Rik|AA501170|Bruce|D630005A10Rik|mKIAA1289	baculoviral IAP repeat-containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-62653267-2	chr2	62653178	62653378	+	553.0	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-7023.0	NM_001164477	71586.0	Mm.136224	NM_027835	ENSMUSG00000026896	Ifih1	9130009C22Rik|Helicard|Hlcd|MDA5|RLR-2	interferon induced with helicase C domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-143127843-2	chr7	143127743	143127943	+	999.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008434, intron 1 of 15)	intron (NM_008434, intron 1 of 15)	20589.0	NM_008434	16535.0	Mm.439769	NM_008434	ENSMUSG00000009545	Kcnq1	AW559127|KVLQT1|Kcna9	potassium voltage-gated channel, subfamily Q, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-31115260-2	chr17	31115160	31115360	+	572.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009593, exon 15 of 15)	3' UTR (NM_009593, exon 15 of 15)	14351.0	NM_011575	21786.0	Mm.4641	NM_011575	ENSMUSG00000024029	Tff3	ITF|mITF	trefoil factor 3, intestinal	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-40821701-1	chr9	40821601	40821801	+	565.0	f1_balb.idr	Intergenic	Intergenic	20428.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	-0.898563638178087	-0.885109685104313	-0.892486422113862	-0.894773426305683	-0.623948975444106	-0.882395102459847	-0.308903895721796	-0.894374095884481	3.04076287829891	0.31224671307005	1
Merged-chr17-87327150-4	chr17	87327052	87327252	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028639, intron 8 of 19)	intron (NM_028639, intron 8 of 19)	44266.0	NM_028639	225049.0	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-3467666-4	chr8	3467576	3467776	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026951)	promoter-TSS (NM_026951)	-28.0	NM_026951	69129.0	Mm.45279	NM_026951	ENSMUSG00000069633	Pex11g	1810022F11Rik|1810049N02Rik|Pex11c|Pex11gamma	peroxisomal biogenesis factor 11 gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-120574743-3	chr2	120574643	120574843	+	842.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009222, intron 1 of 7)	intron (NM_009222, intron 1 of 7)	7072.0	NM_009222	20619.0	Mm.245715	NM_009222	ENSMUSG00000027287	Snap23	23kDa|AA408749|SNAP-23|Sndt|Syndet	synaptosomal-associated protein 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141765215-3	chr4	141765127	141765327	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172338, intron 13 of 14)	intron (NM_172338, intron 13 of 14)	18552.0	NM_001081408	75986.0	Mm.30032	NM_001081408	ENSMUSG00000040706	Agmat	5033405N08Rik	agmatine ureohydrolase (agmatinase)	protein-coding	1.10647998075454	1.21912984957069	1.6762849771918	2.67936704203075	2.21675245063168	1.75125092934461	2.52246649333508	3.07454941706493	1.4016243520987	0.184492269939623	0.660100871193519
Merged-chr8-40023178-1	chr8	40023078	40023278	+	573.0	f1_balb.idr	Intergenic	Intergenic	263775.0	NM_030610	80857.0	Mm.425526	NM_030610	ENSMUSG00000031603	Fgf20	-	fibroblast growth factor 20	protein-coding	-1.8418762459921	-1.8125357239735	-1.82140854000656	-1.82869693527674	-1.56059678980999	-1.8106129477253	-1.81939992894326	-1.82739231600805	1.3620893379502	0.699511506488145	1
Merged-chr15-81421724-4	chr15	81421591	81421791	+	908.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177310, intron 2 of 8)	intron (NM_177310, intron 2 of 8)	-13418.0	NM_021317	57755.0	Mm.440590	NM_021317	ENSMUSG00000047108	Dnajb7	4933424H20Rik|Dj5|mDj5	DnaJ heat shock protein family (Hsp40) member B7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128697649-2	chr10	128697549	128697749	+	738.541626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_016756)	TTS (NM_016756)	-1381.0	NM_177411	19344.0	Mm.12815	NM_011229	ENSMUSG00000000711	Rab5b	C030027M18Rik	RAB5B, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-40269840-4	chr4	40269742	40269942	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134097)	promoter-TSS (NM_134097)	-1.0	NM_134097	106021.0	Mm.251548	NM_134097	ENSMUSG00000036822	Topors	AW105885|LUN|TP53BPL|p53BP3/LUN	topoisomerase I binding, arginine/serine-rich	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-85488079-3	chr8	85488011	85488211	+	792.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-4506.0	NM_173866	108682.0	Mm.200423	NM_173866	ENSMUSG00000031700	Gpt2	4631422C05Rik|ALT2|AU014768|AU041193|C87201	glutamic pyruvate transaminase (alanine aminotransferase) 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-91681262-4	chr13	91681160	91681360	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360776, intron 9 of 15)	intron (NM_001360776, intron 9 of 15)	-60261.0	NM_028790	74156.0	Mm.275963	NM_028790	ENSMUSG00000021620	Acot12	1300004O04Rik|4930449F15Rik|AV027244|Cach|mCACH-1	acyl-CoA thioesterase 12	protein-coding	-0.0506246483341526	-0.0245585595455413	0.964679345311191	-0.0395213070164522	-0.0489569279621976	-0.022685524653721	0.980896293220884	-0.0383672236603453	0.0411024359562296	0.985638187048853	1
Merged-chr13-58128796-7	chr13	58128718	58128918	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029872)	promoter-TSS (NM_029872)	-262.0	NM_029872	77134.0	Mm.490274	NM_029872	ENSMUSG00000007836	Hnrnpa0	1110055B05Rik|3010025E17Rik|Hnrpa0|hnRNP A0	heterogeneous nuclear ribonucleoprotein A0	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-38365088-4	chr18	38364989	38365189	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-26096.0	NM_011937	26384.0	Mm.22374	NM_011937	ENSMUSG00000052102	Gnpda1	GNPDA|Gnp1|Gnpi|oscillin	glucosamine-6-phosphate deaminase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-18858747-4	chr16	18858648	18858848	+	961.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17889.0	NM_010922	18100.0	Mm.20918	NM_010922	ENSMUSG00000022706	Mrpl40	Nlvcf	mitochondrial ribosomal protein L40	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-128720244-4	chr4	128720167	128720367	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018774, intron 7 of 14)	intron (NM_018774, intron 7 of 14)	-7304.0	NM_001195083	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-51832513-3	chr12	51832370	51832570	+	995.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(A)n|Simple_repeat|Simple_repeat	-2934.0	NM_144788	207304.0	Mm.249391	NM_144788	ENSMUSG00000035247	Hectd1	A630086P08Rik|AI844876|b2b327Clo|opm	HECT domain E3 ubiquitin protein ligase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-165192409-4	chr1	165192318	165192518	+	973.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151711, intron 1 of 6)	(T)n|Simple_repeat|Simple_repeat	2015.0	NM_145512	108735.0	Mm.288369	NM_145512	ENSMUSG00000040848	Sft2d2	2010005O13Rik|AI506168|AW561909|cI-45	SFT2 domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-55966366-4	chr16	55966295	55966495	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_024218, exon 1 of 6)	5' UTR (NM_024218, exon 1 of 6)	120.0	NM_024218	68193.0	Mm.29221	NM_024218	ENSMUSG00000098274	Rpl24	0610008L05Rik|Bst	ribosomal protein L24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-58907131-3	chr6	58907019	58907219	+	884.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021432)	promoter-TSS (NM_021432)	7.0	NM_021432	58243.0	Mm.389747	NM_021432	ENSMUSG00000055430	Nap1l5	1110020M21Rik	nucleosome assembly protein 1-like 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-52815845-4	chr1	52815751	52815951	+	746.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008384, intron 1 of 5)	intron (NM_008384, intron 1 of 5)	1837.0	NM_008384	16329.0	Mm.917	NM_008384	ENSMUSG00000026102	Inpp1	2300002C06Rik|AV137389	inositol polyphosphate-1-phosphatase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-100671220-4	chr6	100671117	100671317	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181590)	promoter-TSS (NM_181590)	-60.0	NM_181590	72171.0	Mm.256022	NM_181590	ENSMUSG00000035378	Shq1	2810403P18Rik|Grim-1	SHQ1 homolog (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-112297499-4	chr5	112297461	112297661	+	897.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001326590, intron 1 of 5)	intron (NM_001326590, intron 1 of 5)	20870.0	NM_009419	22022.0	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-109239060-1	chr3	109238960	109239160	+	709.0	f1_c57bl6.idr	Intergenic	Intergenic	-101623.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	2.33586590613244	2.49428058100875	3.32614807221446	2.75546482594515	2.35521907886769	2.36980506990981	1.95412597472798	2.22213840724115	-1.17930131919928	0.132526809757978	0.56965059005937
Merged-chr10-80055114-2	chr10	80055014	80055214	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008162, exon 4 of 7)	exon (NM_008162, exon 4 of 7)	1095.0	NM_001037741	625249.0	Mm.332810	NM_008162	ENSMUSG00000075706	Gpx4	GPx-4|GSHPx-4|PHGPx|mtPHGPx|snGPx	glutathione peroxidase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-29022538-3	chr17	29022444	29022644	+	882.4722289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10116.0	NM_013663	20383.0	Mm.6787	NM_013663	ENSMUSG00000071172	Srsf3	AL024116|Sfrs3|X16	serine/arginine-rich splicing factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-110104309-2	chr5	110104209	110104409	+	701.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_145147, exon 9 of 10)	exon (NM_145147, exon 9 of 10)	3750.0	NM_001281812	403178.0	Mm.297057	NM_207279	ENSMUSG00000064247	Plcxd1	A330045H12Rik|Gm576	phosphatidylinositol-specific phospholipase C, X domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-128883571-4	chr4	128883475	128883675	+	996.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178110)	promoter-TSS (NM_178110)	-565.0	NM_178110	67525.0	Mm.30653	NM_178110	ENSMUSG00000041000	Trim62	6330414G21Rik|AI450348|Dear1	tripartite motif-containing 62	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-105926581-4	chr1	105926489	105926689	+	998.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	63693.0	NR_151625	635504.0	Mm.359717	NR_151625		Gm7160	EG635504	predicted gene 7160	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-24712053-4	chr10	24711945	24712145	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_008813, exon 1 of 25)	5' UTR (NM_008813, exon 1 of 25)	114.0	NM_001308327	18605.0	Mm.27254	NM_008813	ENSMUSG00000037370	Enpp1	4833416E15Rik|AI428932|C76301|CD203c|E-NPP 1|E-NPP1|Ly-41|M6S1|NPP1|Npps|PC-1|Pca|Pca-1|Pdnp1|ttw|twy	ectonucleotide pyrophosphatase/phosphodiesterase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-136450004-4	chr4	136449910	136450110	+	980.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-19751.0	NM_024452	269593.0	Mm.485824	NM_024452	ENSMUSG00000001089	Luzp1	2700072H04Rik|AI266952|Luzp|mFLJ00226	leucine zipper protein 1	protein-coding	4.98016047437894	5.23214013036984	4.41989532980279	5.41137111651069	5.87488217396309	5.47391186090535	4.72638461435681	5.48610239206413	0.461106687702565	0.175246120734158	0.644574787421344
Merged-chr17-17585996-1	chr17	17585896	17586096	+	607.0	f0_balb.idr	intron (NM_172827, intron 1 of 17)	intron (NM_172827, intron 1 of 17)	38493.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	0.06734787478434	-0.258430885272504	-0.262002596332199	-0.264739632441889	-0.0251598782513225	0.0691392278356822	-0.261217173343666	0.0125937563950491	1.26361195173326	0.588008686786252	1
Merged-chr14-47298167-4	chr14	47298047	47298247	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360542)	promoter-TSS (NM_001360542)	-127.0	NM_178684	218975.0	Mm.212297	NM_178684	ENSMUSG00000021840	Mapk1ip1l	9130202B12|C130032J12Rik	mitogen-activated protein kinase 1 interacting protein 1-like	protein-coding	2.17823468161185	3.50853168583922	2.36601099622097	2.77191951504455	2.0477646837353	3.0718669926452	2.77024900191086	2.68444065710098	-0.237013919865161	0.755983352295637	0.998431161219273
Merged-chr19-4397266-4	chr19	4397172	4397372	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001001984)	promoter-TSS (NM_001001984)	-195.0	NM_001001984	225876.0	Mm.31941	NM_001001984	ENSMUSG00000054611	Kdm2a	100043628|5530401A10Rik|AA589516|AW536790|Cxxc8|Fbl11|Fbl7|Fbxl11|Gm4560|Jhdm1|Jhdm1a|lalina	lysine (K)-specific demethylase 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-9494508-4	chr18	9494429	9494629	+	848.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44375.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-23633131-1	chr11	23633031	23633231	+	1000.0	f0_balb.idr	intron (NM_027860, intron 1 of 21)	intron (NM_027860, intron 1 of 21)	500.0	NM_001347242	71675.0	Mm.48031	NM_027860	ENSMUSG00000042208	0610010F05Rik	Kiaa1841|mKIAA1841	RIKEN cDNA 0610010F05 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-112877786-2	chr12	112877686	112877886	+	677.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-16870.0	NM_019925	56696.0	Mm.20455	NM_019925	ENSMUSG00000021298	Gpr132	G2a	G protein-coupled receptor 132	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-23498073-4	chr11	23497962	23498162	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290655)	promoter-TSS (NM_001290655)	-23.0	NM_172391	268390.0	Mm.13148	NM_172391	ENSMUSG00000020288	Ahsa2	-	AHA1, activator of heat shock protein ATPase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-41102321-4	chr9	41102243	41102443	+	937.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176860, intron 1 of 13)	B1F|SINE|Alu	-22837.0	NM_001357412	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	3.23284187388976	3.9264900269752	3.73408157213583	3.56253579884686	3.60915033164734	3.81070506273196	3.24638257946493	3.42419732545151	-0.141469146354367	0.784699592626364	0.998431161219273
Merged-chr16-49046415-2	chr16	49046315	49046515	+	747.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-11071.0	NM_001166210	667772.0	Mm.301387	NM_001166210	ENSMUSG00000092009	Myh15	EG667772	myosin, heavy chain 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-30717010-4	chr14	30716904	30717104	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166532, intron 1 of 20)	intron (NM_001166532, intron 1 of 20)	1389.0	NM_001166532	54650.0	Mm.294662	NM_019460	ENSMUSG00000006527	Sfmbt1	4930442N21Rik|9330180L21Rik|AA536974|Sfmbt|Smr	Scm-like with four mbt domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-138318719-1	chr4	138318619	138318819	+	700.0	f1_c57bl6.idr	intron (NM_026880, intron 3 of 7)	intron (NM_026880, intron 3 of 7)	-2519.0	NR_105986	102466788.0		NR_105986	ENSMUSG00000099200	Mir7019	Gm27947|mmu-mir-7019	microRNA 7019	ncRNA	3.07901429850824	1.9804359777877	2.25759537074772	3.23962115897313	2.71082949990104	1.48151944501932	2.54181960391468	2.34054016608016	-0.810327740852455	0.344663736797588	0.845794803766071
Merged-chr1-191557338-4	chr1	191557232	191557432	+	997.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305233, intron 9 of 15)	intron (NM_001305233, intron 9 of 15)	18212.0	NM_029766	76843.0	Mm.189102	NM_029766	ENSMUSG00000037474	Dtl	2810047L02Rik|5730564G15Rik|L2dtl|Ramp	denticleless E3 ubiquitin protein ligase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171642670-1	chr1	171642570	171642770	+	814.0	f1_c57bl6.idr	promoter-TSS (NR_106151)	promoter-TSS (NR_106151)	-770.0	NR_106151	102465784.0		NR_106151	ENSMUSG00000098316	Mir7683	Gm27950|mmu-mir-7683	microRNA 7683	ncRNA	3.35426363907483	3.50293232277916	4.36417537447494	2.03510241440604	2.25043990228887	2.7270546559858	1.3382604460458	1.28414178184928	-2.65276635783395	0.00216939760269518	0.0353647179852401
Merged-chr2-167764670-2	chr2	167764570	167764770	+	612.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	73493.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-84923236-4	chr15	84923146	84923346	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016714)	promoter-TSS (NM_016714)	-182.0	NM_016714	18141.0	Mm.28379	NM_016714	ENSMUSG00000016619	Nup50	1700030K07Rik|AI413123|Npap60	nucleoporin 50	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-95924465-4	chr4	95924357	95924557	+	906.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113412, intron 15 of 15)	intron (NM_001113412, intron 15 of 15)	42578.0	NR_045777	319247.0	Mm.473527	NM_175680	ENSMUSG00000044125	9530080O11Rik	-	RIKEN cDNA 9530080O11 gene	ncRNA	2.98213395360851	3.10369036803885	3.08150766976392	2.25610476904243	3.34814246248108	1.82059293877549	1.76142558425996	2.40816911060722	-0.681091374907093	0.406710077894783	0.891650782296554
Merged-chr15-55072106-4	chr15	55072006	55072206	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081288)	promoter-TSS (NM_001081288)	46.0	NM_001081288	319944.0	Mm.380957	NM_001081288	ENSMUSG00000037343	Taf2	150kDa|4732460C16Rik|AI425886|CIF150|TAF2B|TAFII-150|TAFII150	TATA-box binding protein associated factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-108763590-3	chr12	108763429	108763629	+	863.1333619999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29782.0	NM_009537	22632.0	Mm.3868	NM_009537	ENSMUSG00000021264	Yy1	AW488674|NF-E1	YY1 transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-83652193-2	chr7	83652093	83652293	+	794.666626	f1_balb.idr|f1_c57bl6.idr	exon (NM_001360089, exon 2 of 7)	exon (NM_001360089, exon 2 of 7)	3302.0	NM_001360089	16170.0	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-103523583-2	chr15	103523483	103523683	+	566.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357980, intron 5 of 14)	L2c|LINE|L2	8606.0	NM_001285890	18574.0	Mm.390792	NM_008800	ENSMUSG00000022489	Pde1b	Pde1b1	phosphodiesterase 1B, Ca2+-calmodulin dependent	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-53415625-2	chr5	53415525	53415725	+	659.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-140154.0	NM_001080928	19664.0	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167270499-2	chr2	167270399	167270599	+	596.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29962.0	NM_008968	19223.0	Mm.2339	NM_008968	ENSMUSG00000017969	Ptgis	Cyp8|Cyp8a1|Pgis	prostaglandin I2 (prostacyclin) synthase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-25140812-1	chr12	25140712	25140912	+	547.0	f1_balb.idr	Intergenic	MIRc|SINE|MIR	11638.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	-0.177195333592461	-0.548474564683932	-0.552363652127835	-0.555364946980533	-0.559607289049404	-0.547598063384652	-0.551505790099277	0.182980940305783	1.2454458264875	0.657661157200512	1
Merged-chr7-16581855-4	chr7	16581757	16581957	+	906.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172739, intron 1 of 6)	intron (NM_172739, intron 1 of 6)	-31967.0	NR_136928	102634559.0	Mm.421602	NR_136928	ENSMUSG00000100583	Gm29443	-	predicted gene 29443	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-125660180-3	chr2	125660082	125660282	+	900.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199022, intron 6 of 11)	intron (NM_199022, intron 6 of 11)	-12918.0	NM_025613	58521.0	Mm.425101	NM_025613	ENSMUSG00000091337	Eid1	2610002K20Rik|Cri1|EID-1|ORF12|PNAS-22|PTD014	EP300 interacting inhibitor of differentiation 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-83076750-3	chr13	83076675	83076875	+	668.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-378442.0	NR_039537	100628621.0		NR_039537	ENSMUSG00000106655	Mir3961	mmu-mir-3961	microRNA 3961	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-50942982-2	chr2	50942882	50943082	+	675.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33298.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-54930592-2	chr11	54930492	54930692	+	587.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271456, intron 8 of 18)	intron (NM_001271456, intron 8 of 18)	27738.0	NM_008161	14778.0	Mm.200916	NM_008161	ENSMUSG00000018339	Gpx3	AA960521|EGPx|GPx|GSHPx-3|GSHPx-P	glutathione peroxidase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-163664081-4	chr2	163663962	163664162	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039390, intron 2 of 4)	L1MB2|LINE|L1	5604.0	NM_001164053	18769.0	Mm.10091	NM_011106	ENSMUSG00000035268	Pkig	PKIgamma	protein kinase inhibitor, gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-19561428-1	chr8	19561328	19561528	+	648.75	f0_balb.idr	Intergenic	Intergenic	66331.0	NM_139220	246080.0	Mm.207067	NM_139220	ENSMUSG00000037790	Defb7	BD-7|Defb15	defensin beta 7	protein-coding	-0.0695781641093283	-0.529060387720535	-0.532804047409069	-0.535689127023687	-0.539761214675813	-0.528215862699504	-0.531978763493427	0.100033006233288	0.581932091788181	0.836272156700989	1
Merged-chr13-113485704-4	chr13	113485626	113485826	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045501, intron 2 of 6)	intron (NR_045501, intron 2 of 6)	17118.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-172530592-3	chr1	172530453	172530653	+	650.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027972, intron 3 of 11)	intron (NM_027972, intron 3 of 11)	9423.0	NM_027972	71870.0	Mm.78373	NM_027972	ENSMUSG00000026546	Cfap45	1700028D05Rik|Ccdc19|Nesg1	cilia and flagella associated protein 45	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-118548286-2	chr4	118548186	118548386	+	969.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4560.0	NM_172383	230678.0	Mm.23639	NM_172383	ENSMUSG00000050854	Tmem125	6330530A05Rik|AV223516	transmembrane protein 125	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-60212591-2	chr18	60212491	60212691	+	603.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001033767, exon 2 of 3)	5' UTR (NM_001033767, exon 2 of 3)	514.0	NM_001033767	240327.0	Mm.357104	NM_001033767	ENSMUSG00000073555	Gm4951	EG240327|Ifgga2	predicted gene 4951	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120151360-4	chr11	120151268	120151468	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164799)	promoter-TSS (NM_001164799)	-17.0	NM_001164798	72055.0	Mm.253403	NM_024249	ENSMUSG00000061306	Slc38a10	1810073N04Rik	solute carrier family 38, member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21546627-4	chr9	21546518	21546718	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021531)	promoter-TSS (NM_021531)	-276.0	NM_021531	59035.0	Mm.178115	NM_021531	ENSMUSG00000032185	Carm1	Prmt4	coactivator-associated arginine methyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-11547234-2	chr8	11547134	11547334	+	961.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359137, intron 3 of 14)	intron (NM_001359137, intron 3 of 14)	3537.0	NM_024248	71941.0	Mm.196576	NM_024248	ENSMUSG00000056228	Cars2	2310051N18Rik|2410044A07Rik|D530030H10Rik|cysRS	cysteinyl-tRNA synthetase 2 (mitochondrial)(putative)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-24398485-2	chr8	24398385	24398585	+	764.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40461.0	NM_026931	69068.0	Mm.25775	NM_026931	ENSMUSG00000056313	Tcim	1110065B09Rik|1810011O10Rik|AW121743|AW321058	transcriptional and immune response regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-13525241-1	chr9	13525141	13525341	+	1000.0	f1_c57bl6.idr	Intergenic	Intergenic	93880.0	NR_028271	18689.0	Mm.41972	NM_008835	ENSMUSG00000031802	Phxr4	Sp5	per-hexamer repeat gene 4	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-68778774-1	chr3	68778674	68778874	+	543.0	f0_balb.idr	Intergenic	Intergenic	17279.0	NR_153374	102639225.0	Mm.109095	NR_153374	ENSMUSG00000102936	Gm35584	-	predicted gene, 35584	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-164523557-2	chr2	164523403	164523603	+	788.5	f0_balb.idr|f1_c57bl6.idr	Intergenic	RLTR44B|LTR|ERVK	25978.0	NM_133779	78928.0	Mm.28228	NM_133779	ENSMUSG00000017721	Pigt	2510012P17Rik|4930534E15Rik|CGI-06|NDAP|Ndap7	phosphatidylinositol glycan anchor biosynthesis, class T	protein-coding	3.30216975697223	3.62133241542159	3.1948414551833	1.57652316783477	3.50102334994032	3.02064039160426	2.91825577296482	2.82608849131361	-0.03713300470508	0.959246213741816	0.998431161219273
Merged-chr11-23494815-2	chr11	23494715	23494915	+	559.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172391, intron 3 of 8)	intron (NM_172391, intron 3 of 8)	3224.0	NM_001290655	268390.0	Mm.13148	NM_172391	ENSMUSG00000020288	Ahsa2	-	AHA1, activator of heat shock protein ATPase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27693907-3	chr2	27693744	27693944	+	943.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011305, intron 1 of 9)	intron (NM_011305, intron 1 of 9)	-15448.0	NM_001290481	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-8252526-2	chr19	8252426	8252626	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	-33626.0	NM_001347426	236293.0	Mm.440581	NM_172776	ENSMUSG00000075044	Slc22a29	D630002G06Rik	solute carrier family 22. member 29	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90574374-4	chr2	90574294	90574494	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	6253.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-45113171-3	chr9	45113075	45113275	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033547, intron 1 of 2)	intron (NR_033547, intron 1 of 2)	-4701.0	NM_001014761	72821.0	Mm.229373	NM_001014761	ENSMUSG00000070304	Scn2b	2810451E09Rik|AI840361|Gm183	sodium channel, voltage-gated, type II, beta	protein-coding	3.04068917852447	2.44038207691189	3.57764136875422	3.03071939174693	3.06562984175473	2.45864653985062	3.60395744336008	3.0462076082739	0.0380695642106106	0.954008012384308	0.998431161219273
Merged-chr4-132483172-4	chr4	132483075	132483275	+	915.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19254.0	NM_026039	67219.0	Mm.45929	NM_026039	ENSMUSG00000066042	Med18	2810046C01Rik	mediator complex subunit 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-101830470-2	chr5	101830370	101830570	+	910.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	65340.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-11513555-4	chr11	11513434	11513634	+	827.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347068, intron 8 of 8)	intron (NM_001347068, intron 8 of 8)	24268.0	NM_028669	73862.0	Mm.159077	NM_028669	ENSMUSG00000020191	Spata48	4930415F15Rik	spermatogenesis associated 48	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-29549587-4	chr11	29549498	29549698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163521, intron 1 of 11)	intron (NM_001163521, intron 1 of 11)	-1558.0	NM_001033865	78294.0	Mm.180003	NM_024277	ENSMUSG00000020460	Rps27a	0610006J14Rik|Uba52|Ubb|Ubc	ribosomal protein S27A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150608819-4	chr4	150608708	150608908	+	891.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 12 of 22)	intron (NM_001085492, intron 12 of 22)	43366.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-40788970-4	chr12	40788873	40789073	+	977.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 31 of 52)	intron (NM_172803, intron 31 of 52)	-235117.0	NM_053122	93757.0	Mm.363813	NM_053122	ENSMUSG00000056899	Immp2l	AI853880|IMP2|Tg(HLA-A/H2-D)2Enge	IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-103367262-1	chr6	103367162	103367362	+	704.0	f0_balb.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-143614.0	NM_007697	12661.0	Mm.251288	NM_007697	ENSMUSG00000030077	Chl1	A530023M13Rik|AI465420|CALL|LICAM2	cell adhesion molecule L1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-23977291-1	chr17	23977191	23977391	+	563.0	f0_balb.idr	Intergenic	RLTR20B2|LTR|ERVK	-2061.0	NM_013921	30943.0	Mm.142568	NM_013921	ENSMUSG00000024124	Prss30	2010015P21Rik|Disp|Disp1|Tmprss8	protease, serine 30	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-53882698-4	chr1	53882617	53882817	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001883, intron 17 of 28)	intron (NM_001001883, intron 17 of 28)	33293.0	NR_106149	102465783.0		NR_106149	ENSMUSG00000098443	Mir7681	Gm27806|mmu-mir-7681	microRNA 7681	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-111056283-4	chr8	111056186	111056386	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028274)	promoter-TSS (NM_028274)	-53.0	NM_028274	72544.0	Mm.24174	NM_028274	ENSMUSG00000109941	Exosc6	2610510N21Rik|C76919|Mtr3	exosome component 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-70939332-3	chr2	70939235	70939435	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	79039.0	NM_001110512	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36730152-2	chr18	36730052	36730252	+	903.2999880000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	-3337.0	NM_009841	12475.0	Mm.3460	NM_009841	ENSMUSG00000051439	Cd14	-	CD14 antigen	protein-coding	-0.147388151255836	0.340468657215073	0.290614808831214	-0.286531218469281	-0.291525314154523	-0.277388221953331	-0.281988371089462	-0.285913953004912	-3.70431181381955	0.119267791091616	1
Merged-chr16-11067056-4	chr16	11066929	11067129	+	901.258301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009223, intron 1 of 1)	CpG	731.0	NM_009223	20621.0	Mm.325800	NM_009223	ENSMUSG00000037972	Snn	2810407J07Rik|AI848521|AW547286	stannin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-129182610-2	chr6	129182510	129182710	+	756.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_053109, intron 1 of 4)	ID_B1|SINE|B4	1995.0	NM_053109	93694.0	Mm.197536	NM_053109	ENSMUSG00000030157	Clec2d	Clr-b|Clrb|Ocil	C-type lectin domain family 2, member d	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-79850799-2	chr10	79850699	79850899	+	616.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_029447)	TTS (NR_029447)	-3633.0	NM_001077363	19205.0	Mm.265610	NM_008956	ENSMUSG00000006498	Ptbp1	AA407203|AL033359|HNRPI|PTB-1|PTB2|PTB3|PTB4|Ptb|pPTB	polypyrimidine tract binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-13437272-4	chr16	13437174	13437374	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-12249.0	NR_030549	100124432.0		NR_030549	ENSMUSG00000076972	Mir193b	Mir193|Mirn193b|mir-193b	microRNA 193b	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-155485795-2	chr4	155485695	155485895	+	722.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5566.0	NM_001160017	14688.0	Mm.2344	NM_008142	ENSMUSG00000029064	Gnb1	AA409223|C77571|Gnb-1	guanine nucleotide binding protein (G protein), beta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-87817031-4	chr10	87816961	87817161	+	993.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41204.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-125542061-4	chr7	125541947	125542147	+	985.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10235.0	NM_001008700	16190.0	Mm.233802	NM_010557	ENSMUSG00000030748	Il4ra	CD124|Il4r	interleukin 4 receptor, alpha	protein-coding	0.770755226822323	0.532465265786607	0.955264393030802	0.832720931268104	0.473194904190372	0.36091877486567	0.355569162874727	0.351045790680176	-3.45444181281331	0.0578988064629732	1
Merged-chr12-104273731-1	chr12	104273631	104273831	+	843.0	f0_balb.idr	Intergenic	Intergenic	10609.0	NM_001199940	628900.0	Mm.436602	NM_001199940	ENSMUSG00000079014	Serpina3i	2B2|EG628900|Gm6930	serine (or cysteine) peptidase inhibitor, clade A, member 3I	protein-coding	0.799492048052456	0.913009206757655	0.878223500683253	1.13683564059661	2.63674382551077	2.99578300074614	2.59945367181371	1.14417995679017	5.17885795377243	0.000132824923458416	0.00386179345311972
Merged-chr19-5638440-2	chr19	5638340	5638540	+	931.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_009045, exon 2 of 11)	exon (NM_009045, exon 2 of 11)	950.0	NM_009045	19697.0	Mm.249966	NM_009045	ENSMUSG00000024927	Rela	p65	v-rel reticuloendotheliosis viral oncogene homolog A (avian)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-46373272-4	chr11	46373176	46373376	+	929.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001281966, intron 1 of 16)	Lx8b|LINE|L1	16239.0	NM_001281968	16428.0	Mm.339927	NM_010583	ENSMUSG00000020395	Itk	Emt|Tcsk|Tsk	IL2 inducible T cell kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-118008214-4	chr2	118008102	118008302	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_126479, intron 8 of 9)	intron (NR_126479, intron 8 of 9)	103000.0	NR_126479	329496.0	Mm.235844	NR_126479	ENSMUSG00000087203	Gm13986	C230060E24	predicted gene 13986	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-17449523-3	chr17	17449455	17449655	+	876.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025681, intron 4 of 5)	intron (NM_025681, intron 4 of 5)	46869.0	NM_025681	66643.0	Mm.268018	NM_025681	ENSMUSG00000047786	Lix1	5730466L18Rik	limb and CNS expressed 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-120579093-2	chr2	120578971	120579171	+	625.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_009222, intron 1 of 7)	intron (NM_009222, intron 1 of 7)	11400.0	NM_009222	20619.0	Mm.245715	NM_009222	ENSMUSG00000027287	Snap23	23kDa|AA408749|SNAP-23|Sndt|Syndet	synaptosomal-associated protein 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-3913362-3	chr11	3913238	3913438	+	907.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_153142, exon 1 of 2)	5' UTR (NM_153142, exon 1 of 2)	1326.0	NM_153142	103710.0	Mm.171514	NM_153142	ENSMUSG00000048807	Slc35e4	A330108F03Rik|AI414849|AI536442	solute carrier family 35, member E4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-113622347-3	chr5	113622270	113622470	+	879.56665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008153, intron 1 of 2)	intron (NM_008153, intron 1 of 2)	21233.0	NM_001359060	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-108340085-4	chr9	108339988	108340188	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001329528, exon 3 of 3)	exon (NM_001329528, exon 3 of 3)	1008.0	NM_001329527	14775.0	Mm.1090	NM_008160	ENSMUSG00000063856	Gpx1	AI195024|AL033363|CGPx|GPx-1|GSHPx-1|Gpx	glutathione peroxidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-63823347-4	chr4	63823241	63823441	+	955.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR104_Mam|LTR|Gypsy	37943.0	NM_009403	21949.0	Mm.4664	NM_009403	ENSMUSG00000028362	Tnfsf8	CD153|CD30LG|Cd30l|Tnlg3a	tumor necrosis factor (ligand) superfamily, member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-86156577-2	chr1	86156477	86156677	+	748.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027456, intron 1 of 20)	intron (NM_027456, intron 1 of 20)	1797.0	NM_001310702	78795.0	Mm.379264	NM_027456	ENSMUSG00000062590	Armc9	3830422A13Rik|4831423D23Rik|4930438O05Rik|5730415N24Rik	armadillo repeat containing 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-60598422-4	chr19	60598321	60598521	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17398.0	NM_001172096	78832.0	Mm.259026	NM_030197	ENSMUSG00000033417	Cacul1	2700078E11Rik|2810417M16Rik|9830127L17Rik|AI450346|D130033C15Rik	CDK2 associated, cullin domain 1	protein-coding	4.98751815075651	4.88704262574175	5.05646284879342	4.4210138375252	4.74091061598967	4.55471802963216	5.2577390064129	4.95373709183394	0.0527149213216488	0.877798668259108	0.998431161219273
Merged-chr13-33953114-3	chr13	33953027	33953227	+	692.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040707, intron 1 of 4)	intron (NR_040707, intron 1 of 4)	-11532.0	NM_001163239	18105.0	Mm.264036	NM_020282	ENSMUSG00000046949	Nqo2	NMO2|Nmor2|Ox2	N-ribosyldihydronicotinamide quinone reductase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-148594885-4	chr5	148594791	148594991	+	717.025024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42103.0	NM_001359199	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	0.847858831511232	1.56959200823594	1.07682444861931	1.05355024603012	1.39926259003996	1.44852049699317	1.63728050534177	1.47420170922028	1.32803493213391	0.295473370334079	0.7986401962885
Merged-chr1-172350792-1	chr1	172350692	172350892	+	662.0	f1_balb.idr	intron (NM_001039484, intron 1 of 1)	intron (NM_001039484, intron 1 of 1)	9582.0	NM_001039484	16513.0	Mm.254563	NM_020269	ENSMUSG00000044708	Kcnj10	BIR10|BIRK-1|Kir1.2|Kir4.1	potassium inwardly-rectifying channel, subfamily J, member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-128723787-2	chr4	128723687	128723887	+	831.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_018774, intron 9 of 14)	intron (NM_018774, intron 9 of 14)	-3784.0	NM_001195083	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-38939273-4	chr6	38939166	38939366	+	983.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 1 of 12)	intron (NM_011539, intron 1 of 12)	20280.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-25728484-2	chr17	25728384	25728584	+	965.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028009, intron 2 of 5)	intron (NM_028009, intron 2 of 5)	767.0	NM_001357176	106707.0	Mm.24603	NM_028009	ENSMUSG00000041199	Rpusd1	2310051D06Rik|AU019540|Rlucl	RNA pseudouridylate synthase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-6265906-2	chr7	6265806	6266006	+	594.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177416, intron 5 of 11)	B3|SINE|B2	9984.0	NM_001177417	627821.0	Mm.99441	NM_001177416	ENSMUSG00000053367	Epp13	EG627821|Eddm13|Gm6792	epididymal protein 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-55445139-4	chr13	55445034	55445234	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286063)	promoter-TSS (NM_001286063)	62.0	NM_001286063	26385.0	Mm.10193	NM_011938	ENSMUSG00000074886	Grk6	Gprk6	G protein-coupled receptor kinase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-99152981-2	chr9	99152881	99153081	+	769.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12770.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-74696441-1	chr16	74696341	74696541	+	570.0	f1_c57bl6.idr	intron (NM_001358493, intron 1 of 28)	Lx9|LINE|L1	-284616.0	NM_175549	268902.0	Mm.171736	NM_175549	ENSMUSG00000052516	Robo2	2600013A04Rik|9430089E08Rik|BB097918|D230004I22Rik|mKIAA1568	roundabout guidance receptor 2	protein-coding	-0.0105176940525286	0.748611182130774	0.587715872983715	-0.00291570207395497	0.143025896286425	0.212854684960484	0.00295121314171773	-0.0021175612719396	-2.34884383455701	0.271842070137145	1
Merged-chr12-73681940-4	chr12	73681816	73682016	+	986.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008856, intron 2 of 13)	intron (NM_008856, intron 2 of 13)	97120.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16097157-4	chr7	16097042	16097242	+	783.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001347559)	TTS (NM_001347559)	-1438.0	NM_025898	108124.0	Mm.104540	NM_025898	ENSMUSG00000006024	Napa	1500039N14Rik|AW209189|RA81|SNAP-alpha|SNAPA|SNARE|a-SNAP|hyh	N-ethylmaleimide sensitive fusion protein attachment protein alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150798948-4	chr4	150798834	150799034	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54862.0	NM_001356323	74155.0	Mm.318841	NM_133753	ENSMUSG00000028967	Errfi1	1300002F13Rik|AI788755|Mig-6|Mig6|RALT	ERBB receptor feedback inhibitor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-56756281-4	chr18	56756171	56756371	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48458.0	NM_010721	16906.0	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-108653928-4	chr3	108653824	108654024	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145543)	promoter-TSS (NM_145543)	-3.0	NM_001355632	229725.0	Mm.214545	NM_145543	ENSMUSG00000027884	Clcc1	Mclc	chloride channel CLIC-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-134435629-4	chr1	134435534	134435734	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-19897.0	NM_153128	240756.0	Mm.87398	NM_153128	ENSMUSG00000026455	Klhl12	C3ip1	kelch-like 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132975088-4	chr4	132974978	132975178	+	701.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010208, intron 1 of 12)	intron (NM_010208, intron 1 of 12)	983.0	NM_010208	14191.0	Mm.271665	NM_010208	ENSMUSG00000028874	Fgr	-	FGR proto-oncogene, Src family tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-50631972-4	chr2	50631854	50632054	+	879.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M3c|LINE|L1	276929.0	NR_154590	102634280.0		NR_154590		Gm48908	-	predicted gene 48908	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167993270-2	chr2	167993170	167993370	+	581.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080708, intron 8 of 21)	intron (NM_001080708, intron 8 of 21)	17323.0	NM_001080708	69553.0	Mm.68454	NM_001080708	ENSMUSG00000074577	Ripor3	2310033K02Rik|Fam65c|Gm124	RIPOR family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-25064112-2	chr16	25064012	25064212	+	644.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_040374, intron 1 of 2)	intron (NR_040374, intron 1 of 2)	4473.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-121381977-4	chr14	121381877	121382077	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2747.0	NM_145465	223255.0	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	4.35115023826678	4.41544084805967	4.85606888786661	4.27141318107854	4.72916322456501	4.50710121431176	4.62954327028773	5.06706684026614	0.329241904836878	0.368411778295579	0.862916999449085
Merged-chr17-74459206-4	chr17	74459105	74459305	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033367)	promoter-TSS (NM_001033367)	-97.0	NM_001033367	268973.0	Mm.311884	NM_001033367	ENSMUSG00000039193	Nlrc4	9530011P19Rik|CLAN|CLAN1|CLANA|CLANB|CLANC|CLAND|Card12|IPAF	NLR family, CARD domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-125441952-12	chr5	125441789	125441989	+	847.8472289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029752, exon 1 of 3)	exon (NM_029752, exon 1 of 3)	321.0	NM_029752	76809.0	Mm.290720	NM_029752	ENSMUSG00000037905	Bri3bp	2410150I18Rik|AI841257|AW742481	Bri3 binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-90923045-7	chr13	90922944	90923144	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024175)	promoter-TSS (NM_024175)	-78.0	NM_024175	66475.0	Mm.306302	NM_024175	ENSMUSG00000049517	Rps23	2410044J15Rik	ribosomal protein S23	protein-coding	6.34546304175937	5.51707434796079	6.30252577968823	5.08382765566226	5.52132271921871	5.87224755982435	6.59281518735968	5.42560967129743	0.0174256184389495	0.958242105593703	0.998431161219273
Merged-chr3-95239775-2	chr3	95239675	95239875	+	820.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001024841, intron 1 of 1)	intron (NM_001024841, intron 1 of 1)	1334.0	NM_001024841	229588.0	Mm.387177	NM_001024841	ENSMUSG00000068860	Gm128	Ment|pmis1	predicted gene 128	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-64623238-2	chr18	64623138	64623338	+	737.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001488, intron 1 of 27)	intron (NM_001001488, intron 1 of 27)	37762.0	NM_001001488	54670.0	Mm.270043	NM_001001488	ENSMUSG00000039529	Atp8b1	AI451886|FIC1|Ic	ATPase, class I, type 8B, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-155473882-4	chr2	155473781	155473981	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GC_rich|Low_complexity|Low_complexity	-33098.0	NM_019825	56406.0	Mm.27592	NM_019825	ENSMUSG00000038369	Ncoa6	AIB3|ASC-2|ASC2|NRC|Ncoa7|PRIP|RAP250|mKIAA0181	nuclear receptor coactivator 6	protein-coding	5.14757479679441	3.70107000342186	3.86850809437196	5.61810655843853	1.22303864848053	1.50371381819563	2.80692748405709	1.34409757479296	-4.64329610196511	0.00139008235296978	0.0254913379404682
Merged-chr19-6939768-2	chr19	6939668	6939868	+	654.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177361, intron 2 of 6)	intron (NM_001177361, intron 2 of 6)	1425.0	NM_207220	107173.0	Mm.276555	NM_207220	ENSMUSG00000024958	Gpr137	AI428855	G protein-coupled receptor 137	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-61440072-4	chr14	61439975	61440175	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008466)	promoter-TSS (NM_008466)	-128.0	NM_008466	16648.0	Mm.25548	NM_008466	ENSMUSG00000021929	Kpna3	IPOA4	karyopherin (importin) alpha 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-36751842-4	chr5	36751724	36751924	+	970.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3145.0	NM_133724	117197.0	Mm.46744	NM_133724	ENSMUSG00000060708	Bloc1s4	2610101N07Rik|Blos4|Cno	biogenesis of lysosomal organelles complex-1, subunit 4, cappuccino	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-30897966-3	chr5	30897877	30898077	+	988.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001048192, intron 12 of 16)	intron (NM_001048192, intron 12 of 16)	8643.0	NM_001294262	231093.0	Mm.440364	NM_174849	ENSMUSG00000029165	Agbl5	9430057O19Rik|CCP5	ATP/GTP binding protein-like 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-94404812-4	chr11	94404704	94404904	+	906.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11828.0	NM_029600	76408.0	Mm.23942	NM_029600	ENSMUSG00000020865	Abcc3	1700019L09Rik|ABC31|MLP2|MOAT-D|MRP3	ATP-binding cassette, sub-family C (CFTR/MRP), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-167207659-2	chr1	167207559	167207759	+	865.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	77468.0	NM_030724	80914.0	Mm.280895	NM_030724	ENSMUSG00000026558	Uck2	AA407809|AI481316|AU018180|AU020720|TSA903|UK|UMK|Umpk	uridine-cytidine kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-87375330-2	chr17	87375230	87375430	+	666.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028639, intron 19 of 19)	intron (NM_028639, intron 19 of 19)	52411.0	NM_029298	75467.0	Mm.50108	NM_029298	ENSMUSG00000036557	Stpg4	1700011E24Rik|GSE	sperm tail PG rich repeat containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-34331099-4	chr18	34331000	34331200	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025527)	promoter-TSS (NM_025527)	-45.0	NM_025527	66384.0	Mm.29452	NM_025527	ENSMUSG00000014504	Srp19	2310020D23Rik	signal recognition particle 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-80389798-2	chr1	80389698	80389898	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49108.0	NM_016716	26554.0	Mm.12665	NM_016716	ENSMUSG00000004364	Cul3	KIAA0617	cullin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-27643115-3	chr15	27643008	27643208	+	763.722229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-12415.0	NM_001013792	432940.0	Mm.309164	NM_001013792	ENSMUSG00000046034	Otulin	C79097|Fam105b|m3Sapc|m7-1Sapc	OTU deubiquitinase with linear linkage specificity	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-75887682-4	chr15	75887586	75887786	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001282443, intron 3 of 13)	intron (NM_001282443, intron 3 of 13)	1037.0	NM_001282443	223645.0		NM_001282443	ENSMUSG00000098678	Mroh6	Gm19570	maestro heat-like repeat family member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-39852825-1	chr5	39852725	39852925	+	568.0	f0_balb.idr	Intergenic	MTD|LTR|ERVL-MaLR	-208194.0	NM_010474	15476.0	Mm.12559	NM_010474	ENSMUSG00000051022	Hs3st1	3-Ost|D5Wsu110e|Hsg3ost	heparan sulfate (glucosamine) 3-O-sulfotransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-94264439-2	chr16	94264339	94264539	+	770.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360045, intron 4 of 10)	intron (NM_001360045, intron 4 of 10)	25852.0	NM_001360045	110948.0	Mm.30921	NM_139145	ENSMUSG00000040820	Hlcs	410I21.SP6|D16Jhu34	holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-59557103-2	chr11	59557003	59557203	+	593.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153314, intron 6 of 9)	intron (NR_153314, intron 6 of 9)	14417.0	NR_153314	216799.0	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-83518414-3	chr13	83518227	83518427	+	995.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170537, intron 1 of 10)	(CA)n|Simple_repeat|Simple_repeat	-5329.0	NM_001347579	17260.0	Mm.24001	NM_025282	ENSMUSG00000005583	Mef2c	5430401D19Rik|9930028G15Rik|AV011172|Mef2	myocyte enhancer factor 2C	protein-coding	2.60161701372289	3.158902476462	3.45759969751983	1.76082423727912	2.82633251417663	3.60133603751534	3.73380030101436	1.77100524431954	0.493951739590566	0.531134626195986	0.950654387632934
Merged-chr17-30137314-4	chr17	30137209	30137409	+	908.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151442, intron 2 of 3)	L1M3|LINE|L1	132270.0	NM_001356265	21769.0	Mm.220972	NM_148926	ENSMUSG00000044477	Zfand3	AW539211|TEG-27|Tex27	zinc finger, AN1-type domain 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-98517817-3	chr10	98517716	98517916	+	760.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	-165949.0	NR_045179	667438.0	Mm.414522	NR_045179	ENSMUSG00000112896	Gm8633	EG667438	predicted gene 8633	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-86522677-2	chr6	86522577	86522777	+	676.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3512.0	NM_011865	23983.0	Mm.274146	NM_011865	ENSMUSG00000051695	Pcbp1	WBP17|[a]CP-1|alphaCP-1|hnRNP E1|hnRNP-E1	poly(rC) binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-8931152-3	chr3	8931053	8931253	+	834.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001025261, exon 8 of 8)	exon (NM_001025261, exon 8 of 8)	-7296.0	NM_025434	66230.0	Mm.38460	NM_025434	ENSMUSG00000040269	Mrps28	1500012D08Rik|AW061224	mitochondrial ribosomal protein S28	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-6716400-2	chr10	6716300	6716500	+	792.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42193.0	NM_001302794	18390.0	Mm.438000	NM_011013	ENSMUSG00000000766	Oprm1	M-OR-1|MOP-R|MOR-1|MOR-1O|Oprm|mor|muOR	opioid receptor, mu 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-137081195-2	chr2	137081095	137081295	+	588.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_013822)	TTS (NM_013822)	35325.0	NM_013822	16449.0	Mm.22398	NM_013822	ENSMUSG00000027276	Jag1	ABE2|Gsfabe2|Htu|Ozz|Ser-1	jagged 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-42424701-4	chr6	42424614	42424814	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9821.0	NM_207028	387353.0	Mm.377914	NM_207028	ENSMUSG00000048284	Tas2r126	T2R12|T2R26|Tas2r26|Tas2r41|mGR26|mt2r35	taste receptor, type 2, member 126	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-67334497-3	chr17	67334395	67334595	+	989.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	19964.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-64621222-2	chr17	64621122	64621322	+	595.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008549, intron 1 of 21)	intron (NM_008549, intron 1 of 21)	19573.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-121796298-3	chr10	121796233	121796433	+	734.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081037, intron 18 of 21)	intron (NM_001081037, intron 18 of 21)	56403.0	NM_173022	270802.0	Mm.209172	NM_173022	ENSMUSG00000053684	BC048403	E030027L10	cDNA sequence BC048403	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-63145496-3	chr14	63145340	63145540	+	933.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007798, exon 10 of 10)	3' UTR (NM_007798, exon 10 of 10)	22978.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-124068581-3	chr9	124068485	124068685	+	859.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33598.0	NM_009915	12772.0	Mm.6272	NM_009915	ENSMUSG00000049103	Ccr2	Cc-ckr-2|Ccr2a|Ccr2b|Ckr2|Ckr2a|Ckr2b|Cmkbr2|mJe-r	chemokine (C-C motif) receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-103865868-3	chr2	103865777	103865977	+	703.805542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-35074.0	NR_131913	100996933.0	Mm.394449	NR_131913		Lincred1	-	long intergenic non-protein coding RNA of erythroid differentiation 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-105394719-2	chr9	105394619	105394819	+	638.333313	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357902)	promoter-TSS (NM_001357902)	568.0	NM_172461	208583.0	Mm.347509	NM_172461	ENSMUSG00000035032	Nek11	4932416N14Rik	NIMA (never in mitosis gene a)-related expressed kinase 11	protein-coding	0.805963041056148	1.06631706899841	1.49677468085604	1.1288745710447	0.951481715549179	0.680854566036431	0.669833042793566	1.45321728061284	-0.692946534933282	0.634711532193314	0.982417279970648
Merged-chr10-44634915-4	chr10	44634793	44634993	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-176145.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-118135570-4	chr4	118135454	118135654	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161774)	promoter-TSS (NM_001161774)	-608.0	NM_001161774	20441.0	Mm.251002	NM_009176	ENSMUSG00000028538	St3gal3	ST3GalIII|ST3N|Siat3|Siat6	ST3 beta-galactoside alpha-2,3-sialyltransferase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-15706154-4	chr17	15706059	15706259	+	938.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007690, intron 1 of 35)	intron (NM_007690, intron 1 of 35)	1192.0	NM_007690	12648.0	Mm.8137	NM_007690	ENSMUSG00000023852	Chd1	4930525N21Rik|AI851787|AW555109	chromodomain helicase DNA binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-43660156-4	chr7	43660059	43660259	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031181)	promoter-TSS (NM_031181)	2.0	NM_031181	83382.0	Mm.157702	NM_031181	ENSMUSG00000030474	Siglece	Cd170|Siglec12|Siglec5|Siglec9|Siglecl1|mSiglec-E	sialic acid binding Ig-like lectin E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-143020933-4	chr7	143020832	143021032	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_110354)	TTS (NR_110354)	15273.0	NM_001128081	27027.0	Mm.28172	NM_020286	ENSMUSG00000000244	Tspan32	AW208513|Art-1|BB235973|D7Wsu37e|Phemx|Tssc6	tetraspanin 32	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-54325656-2	chr15	54325556	54325756	+	558.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TCTCTG)n|Simple_repeat|Simple_repeat	-47172.0	NM_008764	18383.0	Mm.15383	NM_008764	ENSMUSG00000063727	Tnfrsf11b	OCIF|Opg|TR1	tumor necrosis factor receptor superfamily, member 11b (osteoprotegerin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-139206915-2	chr4	139206815	139207015	+	669.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	12804.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-40761625-3	chr9	40761517	40761717	+	776.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133733, intron 2 of 6)	intron (NM_133733, intron 2 of 6)	-39656.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	2.24294329225702	2.66311874709323	2.32013494261864	1.26444458164002	2.26343470246004	3.54101823668594	1.30920759693235	2.87309133421333	1.0385894566607	0.2831439004633	0.786258413306282
Merged-chr2-163617661-2	chr2	163617561	163617761	+	943.833374	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_131225, exon 4 of 4)	non-coding (NR_131225, exon 4 of 4)	10449.0	NM_001305803	76080.0	Mm.89828	NM_029512	ENSMUSG00000017679	Ttpal	3110080A02Rik|5830472M02Rik	tocopherol (alpha) transfer protein-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-62202020-2	chr10	62201920	62202120	+	597.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_197996, intron 2 of 7)	intron (NM_197996, intron 2 of 7)	-7793.0	NR_106122	102465767.0		NR_106122	ENSMUSG00000099185	Mir7662	Gm27876|mmu-mir-7662	microRNA 7662	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-105565044-2	chr5	105564944	105565144	+	591.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133897, intron 2 of 3)	intron (NM_133897, intron 2 of 3)	45573.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-181581874-4	chr2	181581737	181581937	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001164597)	TTS (NM_001164597)	136.0	NM_026765	68556.0	Mm.232400	NM_026765	ENSMUSG00000089917	Uckl1	1110007H10Rik|Urkl1	uridine-cytidine kinase 1-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-43118965-1	chr13	43118865	43119065	+	707.0	f0_balb.idr	intron (NM_001005740, intron 8 of 12)	intron (NM_001005740, intron 8 of 12)	-3874.0	NM_001005748	218194.0	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	1.43946994023995	1.33280870555035	2.19359696102819	3.2472454435118	2.68495066176881	1.3431424256325	3.09326459274702	3.53169988008524	1.03618211882379	0.298654364221794	0.800257675359925
Merged-chr7-63897683-1	chr7	63897583	63897783	+	568.0	f0_balb.idr	intron (NM_021366, intron 1 of 1)	intron (NM_021366, intron 1 of 1)	-19174.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99159326-1	chr7	99159226	99159426	+	1000.0	f1_balb.idr	intron (NM_026384, intron 4 of 7)	intron (NM_026384, intron 4 of 7)	-18182.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	2.64995935656394	1.68478817581155	2.01509251849641	2.86104020110465	1.87952605221568	2.39610396763546	2.73241435841092	1.97019441003117	-0.24546087285846	0.780498088045148	0.998431161219273
Merged-chr8-94778678-4	chr8	94778540	94778740	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009142, intron 2 of 2)	intron (NM_009142, intron 2 of 2)	6460.0	NM_009142	20312.0	Mm.103711	NM_009142	ENSMUSG00000031778	Cx3cl1	AB030188|ABCD-3|AI848747|CX3C|Cxc3|D8Bwg0439e|Scyd1	chemokine (C-X3-C motif) ligand 1	protein-coding	3.63783882711022	3.04575572448716	3.16714417676109	3.42995116972842	3.04122944509027	4.21809695574529	2.96871607410271	3.72164717340891	0.385266617417293	0.510319750751352	0.94512318675548
Merged-chr13-97474688-3	chr13	97474583	97474783	+	790.916687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110432, intron 1 of 1)	intron (NR_110432, intron 1 of 1)	-8018.0	NR_110430	100039691.0	Mm.219358	NR_110430	ENSMUSG00000078952	Lncenc1	Gm11019|Gm2373|Lincenc1|Platr18|linc-Enc1	long non-coding RNA, embryonic stem cells expressed 1	ncRNA	1.40301663450604	2.25987528207071	1.17698457819514	1.73379915203926	2.00314871736592	0.969502765689449	0.949862722844509	1.49009815757858	-0.818929651270871	0.511394995284148	0.94512318675548
Merged-chr8-34805140-6	chr8	34804914	34805114	+	969.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2596.0	NM_176933	319520.0	Mm.170276	NM_176933	ENSMUSG00000031530	Dusp4	2700078F24Rik|AI844617|BB104621|E130306H24Rik|MKP2	dual specificity phosphatase 4	protein-coding	4.68645539883505	4.81898697573195	3.7166743722869	4.02907876501453	4.25845338229644	4.48040926194891	3.24025740947357	3.0032653881405	-0.661985499657401	0.197388575823221	0.679718702856214
Merged-chr12-85385898-4	chr12	85385797	85385997	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11180.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-60290193-2	chr14	60290097	60290297	+	653.0	f0_balb.idr|f0_c57.idr	intron (NM_144843, intron 6 of 13)	intron (NM_144843, intron 6 of 13)	24992.0	NM_144843	219135.0	Mm.247007	NM_144843	ENSMUSG00000021987	Mtmr6	4022440C11Rik|AI428804|AU041072	myotubularin related protein 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-172440511-4	chr2	172440414	172440614	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025542)	promoter-TSS (NM_025542)	-64.0	NM_025542	66404.0	Mm.25157	NM_025542	ENSMUSG00000027502	Rtf2	1700067C04Rik|2410001C21Rik|5730427M17Rik|AA589417|Rtfdc1	replication termination factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-51304915-3	chr2	51304809	51305009	+	850.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	63078.0	NR_040636	329404.0	Mm.417725	NR_040636	ENSMUSG00000086349	Gm13497	A730015I17	predicted gene 13497	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44353751-2	chr7	44353651	44353851	+	764.666626	f1_balb.idr|f1_c57bl6.idr	exon (NM_001034115, exon 24 of 25)	exon (NM_001034115, exon 24 of 25)	21279.0	NM_027049	69349.0	Mm.358922	NM_027049	ENSMUSG00000008028	1700008O03Rik	-	RIKEN cDNA 1700008O03 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-43560280-4	chr13	43560173	43560373	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081059)	promoter-TSS (NM_001081059)	-82.0	NM_001081059	76137.0	Mm.426290	NM_001081059	ENSMUSG00000021371	Mcur1	6230416A05Rik|AU015498|AV136929|AW554392|C88263|Ccdc90a	mitochondrial calcium uniporter regulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-62275448-2	chr10	62275348	62275548	+	822.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_010438, intron 19 of 21)	intron (NM_010438, intron 19 of 21)	23010.0	NM_009314	21337.0	Mm.8054	NM_009314	ENSMUSG00000020081	Tacr2	Nk2r|Skr|Tac2r	tachykinin receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-101913150-4	chr12	101913036	101913236	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028446)	promoter-TSS (NM_028446)	35.0	NM_028446	109181.0	Mm.208618	NM_028446	ENSMUSG00000021188	Trip11	2610511G22Rik|3110031G15Rik|6030460N08Rik|AI450776|GMAP-210|TRIP230	thyroid hormone receptor interactor 11	protein-coding	4.21813691684604	3.96795859956731	4.79402808109523	3.55686324342812	3.89197784693804	4.21875902370964	5.18558173195489	3.57618297740389	0.199347786115245	0.689213804299238	0.996533206832645
Merged-chr10-8241608-2	chr10	8241508	8241708	+	638.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177387, intron 7 of 7)	intron (NM_177387, intron 7 of 7)	277217.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-60934528-2	chr11	60934428	60934628	+	944.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008928, intron 1 of 11)	intron (NM_008928, intron 1 of 11)	2471.0	NM_008928	26397.0	Mm.18494	NM_008928	ENSMUSG00000018932	Map2k3	AW212142|MEK3|MKK3|Prkmk3|mMKK3b	mitogen-activated protein kinase kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-61931343-4	chr8	61931250	61931450	+	930.1749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293783, intron 1 of 37)	Lx7|LINE|L1	3263.0	NM_001293783	234311.0	Mm.275233	NM_144928	ENSMUSG00000037921	Ddx60	9830118M07	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-39957827-4	chr15	39957745	39957945	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4804.0	NR_045719	105976.0	Mm.394885	NR_045719		AU022793	-	expressed sequence AU022793	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118697077-2	chr9	118696977	118697177	+	707.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 14 of 27)	intron (NM_133721, intron 14 of 27)	-14615.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70107188-4	chr14	70107094	70107294	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021328, intron 1 of 8)	intron (NM_021328, intron 1 of 8)	7101.0	NM_001360404	57784.0	Mm.24186	NM_021328	ENSMUSG00000022089	Bin3	1700015F07Rik	bridging integrator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-122302502-4	chr2	122302425	122302625	+	690.9375	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_025777, exon 6 of 6)	3' UTR (NM_025777, exon 6 of 6)	3625.0	NM_025777	66811.0	Mm.171333	NM_025777	ENSMUSG00000027225	Duoxa2	9030623N16Rik|Nip2	dual oxidase maturation factor 2	protein-coding	-0.804163207677509	-0.794983101399937	-0.797999606688127	-0.274812235520353	-0.427050854416988	-0.792783235177023	-0.797335026103832	-0.799915875049286	-0.599433640647898	0.843645376656349	1
Merged-chr18-89159492-1	chr18	89159392	89159592	+	590.0	f0_c57.idr	Intergenic	Intergenic	-37935.0	NM_178687	225825.0	Mm.139293	NM_178687	ENSMUSG00000034028	Cd226	BC051526|DNAM-1|DNAM1|Pta1|TLiSA1	CD226 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-85893652-2	chr1	85893552	85893752	+	845.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022417)	promoter-TSS (NM_022417)	-858.0	NM_022417	64294.0	Mm.29870	NM_022417	ENSMUSG00000026223	Itm2c	3110038L02Rik|BRI3|Bricd2c|E25|E25C|ITM3	integral membrane protein 2C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-130629512-4	chr4	130629419	130629619	+	921.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33802.0	NM_030722	80912.0	Mm.440206	NM_030722	ENSMUSG00000028580	Pum1	AA517475|Pumm|mKIAA0099	pumilio RNA-binding family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-75467760-4	chr1	75467671	75467871	+	688.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183022, intron 1 of 9)	intron (NM_183022, intron 1 of 9)	11700.0	NM_001001566	74241.0	Mm.260577	NM_001001565	ENSMUSG00000032997	Chpf	1700028N03Rik|AI414328|D1Bwg1363e	chondroitin polymerizing factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-77052918-3	chr12	77052815	77053015	+	857.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-90667.0	NM_001146176	17187.0	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-34865984-2	chr6	34865884	34866084	+	883.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_197986, intron 1 of 1)	intron (NM_197986, intron 1 of 1)	2838.0	NM_197986	68487.0	Mm.248440	NM_197986	ENSMUSG00000057137	Tmem140	1110007F12Rik	transmembrane protein 140	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45126547-2	chr7	45126447	45126647	+	830.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_000003)	promoter-TSS (NR_000003)	-112.0	NR_000003	27211.0		NR_000003	ENSMUSG00000065818	Snord35a	Rnu35a|U35|U35A	small nucleolar RNA, C/D box 35A	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-34129159-1	chr10	34129059	34129259	+	677.5	f0_balb.idr	Intergenic	MIRb|SINE|MIR	-1187.0	NM_175449	215900.0	Mm.34479	NM_175449	ENSMUSG00000046031	Fam26f	A630077B13Rik|Calhm6	family with sequence similarity 26, member F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-25910292-4	chr15	25910165	25910365	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034851, intron 3 of 8)	intron (NM_001034851, intron 3 of 8)	-23287.0	NM_001277318	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32570853-4	chr2	32570767	32570967	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010073)	promoter-TSS (NM_010073)	9.0	NM_010073	13481.0	Mm.22001	NM_010073	ENSMUSG00000026810	Dpm2	AW557993|R75484	dolichol-phosphate (beta-D) mannosyltransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-120203974-4	chr7	120203880	120204080	+	996.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026458)	promoter-TSS (NM_026458)	16.0	NM_026458	67928.0	Mm.158178	NM_026458	ENSMUSG00000062017	Abca14	1700110B15Rik|4930539G24Rik	ATP-binding cassette, sub-family A (ABC1), member 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-99030787-4	chr13	99030702	99030902	+	978.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46237.0	NM_027064	69382.0	Mm.45466	NM_027064	ENSMUSG00000045022	1700024P04Rik	H2bl1|Subh2bv	RIKEN cDNA 1700024P04 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-76160084-3	chr18	76159985	76160185	+	695.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10467.0	NR_105776	102465184.0		NR_105776	ENSMUSG00000098276	Mir6358	Gm27830|mmu-mir-6358	microRNA 6358	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-83367402-4	chr15	83367306	83367506	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027980)	promoter-TSS (NR_027980)	-109.0	NR_027980	69291.0	Mm.66794	NM_001033147		1700001L05Rik	-	RIKEN cDNA 1700001L05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135508981-2	chr4	135508881	135509081	+	551.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030189, intron 3 of 8)	intron (NM_030189, intron 3 of 8)	12994.0	NM_030189	78806.0	Mm.374844	NM_030189	ENSMUSG00000028801	Stpg1	4930403G18Rik|4930555I21Rik|Mapo2	sperm tail PG rich repeat containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-15277222-4	chr3	15277100	15277300	+	838.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	55102.0	NM_001076679	751864.0	Mm.431296	NM_001076679	ENSMUSG00000078783	Gm9733	-	predicted gene 9733	protein-coding	3.31344075644894	2.94791795225288	3.22076829295945	3.78566730323184	3.90528440506808	3.83448946505974	3.00401814469574	4.8910464496538	1.05059240369277	0.0663308923056763	0.386381980203298
Merged-chr1-173430538-4	chr1	173430450	173430650	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013779, intron 2 of 8)	ORR1F|LTR|ERVL-MaLR	9946.0	NM_001013779	383619.0	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	-0.928940593673113	0.15260240890053	-0.919403370180166	-0.922956985378252	-0.928043701396376	-0.905131160573435	-0.918394354967459	-0.922333464130162	-3.4757377177308	0.248847205590595	1
Merged-chr2-45108845-4	chr2	45108737	45108937	+	996.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149354, intron 2 of 2)	intron (NR_149354, intron 2 of 2)	1440.0	NM_001289521	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-62555830-2	chr14	62555694	62555894	+	761.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001243857)	promoter-TSS (NM_001243857)	57.0	NM_001243857	629059.0	Mm.291864	NM_001243857	ENSMUSG00000035184	Fam124a	EG629059	family with sequence similarity 124, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-93654171-1	chr1	93654071	93654271	+	620.0	f0_balb.idr	Intergenic	MT2B1|LTR|ERVL	-18444.0	NM_021537	59041.0	Mm.28761	NM_021537	ENSMUSG00000026277	Stk25	1500019J11Rik|AU018434|C86992|Ste20-like|Ysk1	serine/threonine kinase 25 (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-50132321-2	chr11	50132221	50132421	+	924.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_029745, intron 1 of 20)	intron (NM_029745, intron 1 of 20)	961.0	NM_029745	76795.0	Mm.290975	NM_029745	ENSMUSG00000036644	Tbc1d9b	-	TBC1 domain family, member 9B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-73475850-4	chr2	73475740	73475940	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153138, intron 1 of 7)	MLT1F2|LTR|ERVL-MaLR	9913.0	NM_001289723	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-29253979-4	chr19	29253877	29254077	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008413, intron 2 of 24)	intron (NM_008413, intron 2 of 24)	2174.0	NM_008413	16452.0	Mm.275839	NM_008413	ENSMUSG00000024789	Jak2	Fd17	Janus kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-57071959-4	chr9	57071853	57072053	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045886)	promoter-TSS (NR_045886)	13.0	NR_045886	100038566.0	Mm.361900	NR_045886		Gm10658	-	predicted gene 10658	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-180641943-2	chr2	180641843	180642043	+	658.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360335, intron 1 of 5)	intron (NM_001360335, intron 1 of 5)	748.0	NM_178254	277353.0	Mm.473700	NM_178254	ENSMUSG00000038932	Tcfl5	Figlb|Sosf1	transcription factor-like 5 (basic helix-loop-helix)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-103826530-4	chr14	103826431	103826631	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276296, intron 1 of 7)	intron (NM_001276296, intron 1 of 7)	17170.0	NM_007904	13618.0	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-75828059-4	chr7	75827893	75828093	+	871.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20345.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-71392778-2	chr2	71392678	71392878	+	779.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_026115, intron 2 of 10)	intron (NM_026115, intron 2 of 10)	3518.0	NM_026115	107435.0	Mm.272472	NM_026115	ENSMUSG00000027018	Hat1	2410071B14Rik|AA536933|Hat-1|KAT1	histone aminotransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80748254-2	chr10	80748154	80748354	+	863.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5979.0	NM_007460	11776.0	Mm.27082	NM_007460	ENSMUSG00000020198	Ap3d1	AA407035|Ap3d|Bolvr|mBLVR1|mh|mocha	adaptor-related protein complex 3, delta 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-61080426-3	chr19	61080234	61080434	+	815.266663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018869, intron 10 of 15)	intron (NM_018869, intron 10 of 15)	60506.0	NR_131956	414758.0	Mm.100056	NM_001001737	ENSMUSG00000074733	Zfp950	5830428H23Rik|AU016073|BC055757|Gm34518|Zfp826|mszf84	zinc finger protein 950	protein-coding	0.912291803087864	0.296169652201318	0.291196494040435	0.287392456865096	0.862369422505444	0.297297287900476	0.292289233194783	0.771872030781742	0.63846985285267	0.75866371800853	1
Merged-chr13-58996667-4	chr13	58996585	58996785	+	922.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025074, intron 13 of 17)	intron (NM_001025074, intron 13 of 17)	188988.0	NM_001025074	18212.0	Mm.130054	NM_008745	ENSMUSG00000055254	Ntrk2	GP145-TrkB/GP95-TrkB|Tkrb|trk-B|trkB	neurotrophic tyrosine kinase, receptor, type 2	protein-coding	1.62400662677991	1.06376590482887	1.04240153863715	2.20774731913082	1.36852445805137	2.19947300036191	1.90698384246957	1.72432140122215	0.690641818882334	0.557540081016018	0.960321604678676
Merged-chr17-12031435-4	chr17	12031388	12031588	+	771.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016694, intron 10 of 11)	intron (NM_016694, intron 10 of 11)	-87796.0	NM_026644	68262.0	Mm.258300	NM_026644	ENSMUSG00000023827	Agpat4	1500003P24Rik	1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-93265661-4	chr5	93265564	93265764	+	938.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1909.0	NM_007635	12452.0	Mm.3527	NM_007635	ENSMUSG00000029385	Ccng2	-	cyclin G2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-81763619-4	chr7	81763431	81763631	+	874.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025997, intron 1 of 2)	CpG	578.0	NM_025997	67148.0	Mm.241472	NM_025997	ENSMUSG00000038646	Fam103a1	2410047I02Rik|2610204K14Rik|RAM	family with sequence similarity 103, member A1	protein-coding	1.349027265963	1.03261397857853	1.79039447686957	1.22698467927129	1.17767608387138	2.2481147049695	1.80601290215211	2.68110178795895	2.0517571769664	0.0702444363862593	0.398668891361662
Merged-chr19-10859485-4	chr19	10859372	10859572	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133804, intron 10 of 10)	intron (NM_133804, intron 10 of 10)	10307.0	NM_133804	98170.0	Mm.490254	NM_133804	ENSMUSG00000024736	Tmem132a	6720481D13Rik|Hspa5bp1|Orai1|R74613	transmembrane protein 132A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84989556-4	chr8	84989461	84989661	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1034.0	NM_133255	170833.0	Mm.247775	NM_133255	ENSMUSG00000052566	Hook2	A630054I03Rik	hook microtubule tethering protein 2	protein-coding	2.2703201382341	1.43227265655615	2.34334643146295	2.9232974981778	2.98394775176452	2.68726143965255	1.6669976256051	2.51553874879948	0.412938173588363	0.646917865485416	0.984490176318369
Merged-chr11-53931239-4	chr11	53931123	53931323	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39520.0	NM_011396	20520.0	Mm.42253	NM_011396	ENSMUSG00000018900	Slc22a5	Lstpl|Octn2|jvs	solute carrier family 22 (organic cation transporter), member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-7063819-2	chr10	7063719	7063919	+	903.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40634.0	NM_001033391	320495.0	Mm.331674	NM_001033391	ENSMUSG00000064065	Ipcef1	A130090K04Rik	interaction protein for cytohesin exchange factors 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-133443634-4	chr2	133443522	133443722	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-108537.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-54028712-4	chr11	54028625	54028825	+	943.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001330304)	promoter-TSS (NM_001330304)	-621.0	NM_001330304	30805.0	Mm.274590	NM_019687	ENSMUSG00000020334	Slc22a4	Octn1	solute carrier family 22 (organic cation transporter), member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-163929049-4	chr2	163928964	163929164	+	920.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-10381.0	NM_183023	241770.0	Mm.330760	NM_183023	ENSMUSG00000035226	Rims4	6530406L02|Rim4	regulating synaptic membrane exocytosis 4	protein-coding	3.14840485382232	3.61936660582026	2.51447335841481	2.062587469993	3.56725683263779	2.63362790486862	2.8331914483878	4.48310903197947	0.993557259835812	0.162037325773216	0.623213752294964
Merged-chr5-107708469-4	chr5	107708371	107708571	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4991.0	NR_045871	654809.0	Mm.399159	NR_045871	ENSMUSG00000106333	4930428O21Rik	-	RIKEN cDNA 4930428O21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191894583-4	chr1	191894467	191894667	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_030669, exon 5 of 5)	non-coding (NR_030669, exon 5 of 5)	-12214.0	NM_009579	22782.0	Mm.9024	NM_009579	ENSMUSG00000037434	Slc30a1	AI839647|C130040I11Rik|Znt1	solute carrier family 30 (zinc transporter), member 1	protein-coding	6.09949502525409	6.51853129171077	5.87062436791859	6.19545643212207	6.45025217238925	6.38211199096233	5.97557810177709	5.75807905695891	-0.016861124659885	0.944582721488071	0.998431161219273
Merged-chr9-63755835-2	chr9	63755735	63755935	+	580.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016769, intron 1 of 8)	MIRc|SINE|MIR	2159.0	NM_016769	17127.0	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-120926269-4	chr4	120926161	120926361	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	-1256.0	NM_001160043	73172.0	Mm.151436	NM_028457	ENSMUSG00000028629	Exo5	3110037I16Rik|AV297100|Dem1|Exo V|mExo5	exonuclease 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-122033545-1	chr7	122033445	122033645	+	580.0	f0_c57.idr	TTS (NM_026140)	TTS (NM_026140)	-12347.0	NM_028758	74105.0	Mm.29619	NM_028758	ENSMUSG00000030872	Gga2	1200007E24Rik|mKIAA1080	golgi associated, gamma adaptin ear containing, ARF binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-51990989-1	chr9	51990889	51991089	+	548.0	f1_balb.idr	Intergenic	Intergenic	-27387.0	NM_007996	14148.0	Mm.1061	NM_007996	ENSMUSG00000032051	Fdx1	-	ferredoxin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-53134398-4	chr15	53134305	53134505	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	211778.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120493365-2	chr8	120493265	120493465	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198671, intron 1 of 15)	intron (NM_198671, intron 1 of 15)	4499.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-48814872-3	chr2	48814765	48814965	+	798.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007396, intron 1 of 10)	CpG	756.0	NM_007396	11480.0	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-92668436-4	chr13	92668316	92668516	+	973.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172588, intron 2 of 11)	intron (NM_172588, intron 2 of 11)	57278.0	NM_172588	218442.0	Mm.297970	NM_172588	ENSMUSG00000021703	Serinc5	A130038L21Rik|AIGP3|C86123|TPO1	serine incorporator 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-121947886-4	chr8	121947766	121947966	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2626.0	NM_016812	53325.0	Mm.287163	NM_016812	ENSMUSG00000025316	Banp	AA408158|SMAR1	BTG3 associated nuclear protein	protein-coding	4.2375353182119	4.32661227370155	4.18501914054471	4.49913881779017	4.77078154855222	5.05008486600315	5.08109039544359	3.72533391190435	0.545956961582944	0.183035848252001	0.657952330718128
Merged-chr2-124649211-4	chr2	124649115	124649315	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291000, intron 1 of 18)	RMER15|LTR|ERVL	-4366.0	NM_199240	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120729738-4	chr11	120729606	120729806	+	993.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007621, exon 8 of 8)	3' UTR (NM_007621, exon 8 of 8)	2315.0	NM_007621	12409.0	Mm.21454	NM_007621	ENSMUSG00000025150	Cbr2	MLCR	carbonyl reductase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127538051-4	chr10	127537963	127538163	+	968.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008512)	TTS (NM_008512)	-3504.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-146525695-1	chr6	146525595	146525795	+	589.0	f0_balb.idr	Intergenic	Intergenic	-23472.0	NM_019923	16439.0	Mm.7800	NM_010586	ENSMUSG00000030287	Itpr2	AI649341|InsP3R-2|InsP3R-5|Ip3r2|Itpr5|insP3R2	inositol 1,4,5-triphosphate receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-139176026-4	chr4	139175939	139176139	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033543, exon 3 of 3)	non-coding (NR_033543, exon 3 of 3)	4616.0	NR_033543	100038595.0	Mm.385206	NR_033543	ENSMUSG00000073739	Gm16287	-	predicted gene 16287	ncRNA	4.97323767925887	4.9337432207624	5.45189048042779	5.04620233138787	4.97930992200359	4.53533095741814	5.3405858097014	5.90349864208085	0.199683791137043	0.564911178263579	0.961027174138353
Merged-chr13-100744214-4	chr13	100744111	100744311	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025369, intron 1 of 3)	CpG	448.0	NM_001190264	66128.0	Mm.306173	NM_025369	ENSMUSG00000061474	Mrps36	1110018B13Rik|S36mt	mitochondrial ribosomal protein S36	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-29758661-2	chr6	29758561	29758761	+	604.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_176996, intron 9 of 11)	intron (NM_176996, intron 9 of 11)	-9782.0	NM_021414	74340.0	Mm.210899	NM_021414	ENSMUSG00000029772	Ahcyl2	4631427C17Rik|AI227036|Adohcyase3|mKIAA0828	S-adenosylhomocysteine hydrolase-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-103775164-2	chr13	103775064	103775264	+	577.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361085)	promoter-TSS (NM_001361085)	-556.0	NM_001361085	218543.0	Mm.458176	NM_172592	ENSMUSG00000032621	Srek1	8430401B01|AI450757|AI462342|SRrp508|SRrp86|Sfrs12|Srsf12	splicing regulatory glutamine/lysine-rich protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-45197245-4	chr9	45197136	45197336	+	907.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198971, intron 1 of 4)	intron (NM_001198971, intron 1 of 4)	1470.0	NM_001198971	408059.0	Mm.249297	NM_001198971	ENSMUSG00000091996	BC049352	SMIM35	cDNA sequence BC049352	protein-coding	5.01620012658519	5.08053703121392	5.62483515383227	5.06018561679651	5.4776917604999	4.88600863341033	5.77963904219102	5.04867980733984	0.151298526791073	0.634796323417137	0.982417279970648
Merged-chr9-81583194-1	chr9	81583094	81583294	+	628.0	f1_balb.idr	Intergenic	MER57-int|LTR|ERV1	-48736.0	NR_040394	319405.0	Mm.246494	NR_040393	ENSMUSG00000097466	D430036J16Rik	-	RIKEN cDNA D430036J16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46506229-1	chr19	46506129	46506329	+	574.0	f1_c57bl6.idr	intron (NM_053100, intron 1 of 5)	intron (NM_053100, intron 1 of 5)	4581.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	1.43395258052739	1.44720038616986	1.82751561315903	1.17508098096837	1.44629560225385	0.994412463467613	2.52215174736944	1.52302760606961	0.830417517463036	0.476066729865682	0.927406040011522
Merged-chr16-10986555-2	chr16	10986455	10986655	+	831.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019980, intron 1 of 3)	B3|SINE|B2	6566.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-145029274-4	chr7	145029152	145029352	+	929.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-89327.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	1.74021583812074	2.07016338353424	1.88059377402306	1.17071692094983	1.86175919920163	1.95906730243532	2.12418006020235	1.70794739309749	0.478313312011375	0.643702045278126	0.983220888090013
Merged-chr4-135820417-4	chr4	135820311	135820511	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35660.0	NM_001284196	14105.0	Mm.10229	NM_010178	ENSMUSG00000028676	Srsf10	FUSIP2|Fusip1|NSSR1|NSSR2|Nssr|SRrp40|Sfrs13a|Srsf13a|TASR|TASR1|TASR2	serine/arginine-rich splicing factor 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-120290679-2	chr2	120290568	120290768	+	694.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1599.0	NM_001024137	78390.0	Mm.330507	NM_001024137	ENSMUSG00000070719	Pla2g4d	2610311B01Rik|Pla2delta|cPLA2delta	phospholipase A2, group IVD	protein-coding	0.37247920430294	-0.418648350609392	-0.423008841804279	0.0128650662971212	-0.431143437685557	-0.417666247802255	-0.422046591791286	-0.425788490072499	-3.63546055760639	0.166659686740493	1
Merged-chr15-73513019-2	chr15	73512919	73513119	+	975.666626	f1_balb.idr|f1_c57bl6.idr	intron (NR_152151, intron 1 of 23)	intron (NR_152151, intron 1 of 23)	459.0	NM_001081066	105841.0	Mm.322557	NM_001081066	ENSMUSG00000036661	Dennd3	AI447457|E030003N15Rik	DENN/MADD domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-88290559-3	chr8	88290467	88290667	+	741.733337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037723, intron 1 of 27)	intron (NM_001037723, intron 1 of 27)	1501.0	NM_001037723	11513.0	Mm.288206	NM_007406	ENSMUSG00000031659	Adcy7	AA407758	adenylate cyclase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114652811-2	chr11	114652711	114652911	+	702.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15732.0	NM_023372	67671.0	Mm.238817	NM_023372	ENSMUSG00000057322	Rpl38	0610025G13Rik|Rbt|Ts|Tss	ribosomal protein L38	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-11420452-4	chr16	11420349	11420549	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028964, intron 10 of 20)	Tigger17|DNA|TcMar-Tigger	14801.0	NM_001290148	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-117736180-4	chr12	117736073	117736273	+	999.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175930, intron 22 of 27)	RLTR42-int|LTR|ERVK	-107688.0	NM_146040	217946.0	Mm.281149	NM_146040	ENSMUSG00000021175	Cdca7l	BC006933|JPO2	cell division cycle associated 7 like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-88600207-3	chr1	88600105	88600305	+	831.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48688.0	NR_037971	100503197.0	Mm.99352	NR_037971	ENSMUSG00000100798	Gm19589	-	predicted gene, 19589	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-106236464-3	chr7	106236314	106236514	+	583.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21074.0	NM_029000	74558.0	Mm.458429	NM_029000	ENSMUSG00000045868	Gvin1	9130002C22Rik|9830104F22Rik|Iigs1|VLIG|VLIG-1	GTPase, very large interferon inducible 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-76687240-3	chr14	76687144	76687344	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_015485)	TTS (NR_015485)	9676.0	NR_015485	73272.0	Mm.116804	NR_015485	ENSMUSG00000101009	1700108F19Rik	1700020I02Rik|BB065030	RIKEN cDNA 1700108F19 gene	ncRNA	3.72540400205553	2.94688254770555	3.5969148744952	2.08074891561262	1.30695001922685	2.96974880598274	2.49587989974901	1.89628191985781	-1.68064337808406	0.0445998076102614	0.303923793094235
Merged-chr19-5818112-4	chr19	5818008	5818208	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15436.0	NR_002847	72289.0	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-20436344-3	chr11	20436231	20436431	+	736.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17D2|LTR|ERVK	-103618.0	NM_018861	55963.0	Mm.6379	NM_018861	ENSMUSG00000020142	Slc1a4	ASCT-1|ASCT1|AW045657|SATT	solute carrier family 1 (glutamate/neutral amino acid transporter), member 4	protein-coding	0.613507975051763	1.15136815634899	1.39340445687933	0.802823634309923	0.453255325153048	0.483370107916037	0.473682726299371	0.942489874228534	-2.31395074887989	0.169830532732159	1
Merged-chr15-76332040-2	chr15	76331940	76332140	+	868.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_010331, exon 2 of 12)	exon (NM_010331, exon 2 of 12)	746.0	NM_010331	14731.0	Mm.5903	NM_010331	ENSMUSG00000022561	Gpaa1	C80044|mGAA1	GPI anchor attachment protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-17234796-4	chr17	17234624	17234824	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001362181)	promoter-TSS (NM_001362181)	-179.0	NM_001362181	102640673.0		NM_001362181		LOC102640673	-	zinc finger protein 431-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-105803820-4	chr3	105803736	105803936	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2455.0	NM_145541	109905.0	Mm.101922	NM_145541	ENSMUSG00000068798	Rap1a	AI848598|G-22K|Krev-1|Rap1	RAS-related protein 1a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30735438-2	chr2	30735338	30735538	+	558.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR12BD_Mm|LTR|ERVK	14228.0	NR_037272	100526499.0		NR_037272	ENSMUSG00000093091	Mir3089	mir-3089|mmu-mir-3089	microRNA 3089	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-131861229-5	chr4	131861085	131861285	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025297, intron 5 of 9)	MIRc|SINE|MIR	-12454.0	NM_020587	57317.0	Mm.2478	NM_020587	ENSMUSG00000028911	Srsf4	5730499P16Rik|AW550192|MNCb-2616|SRp75|Sfrs4	serine/arginine-rich splicing factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-57147640-2	chr9	57147540	57147740	+	773.166626	f1_balb.idr|f1_c57bl6.idr	intron (NR_151685, intron 1 of 8)	intron (NR_151685, intron 1 of 8)	665.0	NM_028347	72774.0	Mm.35749	NM_028347	ENSMUSG00000032298	Neil1	2810450N13Rik|NEH1|Nei1	nei endonuclease VIII-like 1 (E. coli)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-47868852-2	chr12	47868752	47868952	+	642.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3A|LINE|L1	-1050077.0	NM_021361	664883.0	Mm.247195	NM_021361	ENSMUSG00000021047	Nova1	9430099M15Rik|G630039L02|Nova-1	neuro-oncological ventral antigen 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-17217260-4	chr19	17217108	17217308	+	755.458313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181348, intron 19 of 19)	intron (NM_181348, intron 19 of 19)	122297.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	2.97857147808795	2.82442147254816	1.55440407466225	3.14198119183329	2.09517909387654	3.18711871316126	3.48573922565975	3.77884325780913	0.879270678195995	0.250425493848274	0.748509191602971
Merged-chr19-3911278-2	chr19	3911178	3911378	+	999.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271443, intron 3 of 6)	intron (NM_001271443, intron 3 of 6)	1496.0	NM_144870	225887.0	Mm.44227	NM_144870	ENSMUSG00000059734	Ndufs8	BC021616|CI-23kD|TYKY	NADH dehydrogenase (ubiquinone) Fe-S protein 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-59642855-3	chr2	59642755	59642955	+	665.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198294, intron 1 of 26)	intron (NM_198294, intron 1 of 26)	-3914.0	NM_001290659	66860.0	Mm.27917	NM_198294	ENSMUSG00000035168	Tanc1	1200003E16Rik|Tanc|mKIAA1728	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-157430075-3	chr2	157429955	157430155	+	836.0888669999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025395, intron 1 of 13)	B1F1|SINE|Alu	5762.0	NM_001025395	20779.0	Mm.22845	NM_009271	ENSMUSG00000027646	Src	AW259666|pp60c-src	Rous sarcoma oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-37323117-3	chr10	37323009	37323209	+	670.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-184183.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117413362-4	chr11	117413258	117413458	+	980.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-1031.0	NR_132097	105827746.0	Mm.388009	NR_132097	ENSMUSG00000086588	Gm11729	-	predicted gene 11729	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-105663254-4	chr1	105663137	105663337	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029349)	promoter-TSS (NM_029349)	439.0	NM_013784	27392.0	Mm.268911	NM_013784	ENSMUSG00000056536	Pign	Gm20308|PIG-N	phosphatidylinositol glycan anchor biosynthesis, class N	protein-coding	4.15731630789359	4.97549730938955	4.48556521788604	3.67487099670246	4.79402102885757	4.11001733047562	4.65808888753216	3.69457473220674	-0.011653067156665	0.979441313043252	0.998431161219273
Merged-chr1-85896906-4	chr1	85896815	85897015	+	986.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022417, intron 1 of 5)	intron (NM_022417, intron 1 of 5)	2405.0	NM_022417	64294.0	Mm.29870	NM_022417	ENSMUSG00000026223	Itm2c	3110038L02Rik|BRI3|Bricd2c|E25|E25C|ITM3	integral membrane protein 2C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-28189895-4	chr15	28189810	28190010	+	874.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13856.0	NM_133365	110082.0	Mm.248464	NM_133365	ENSMUSG00000022262	Dnah5	AU022615|Dnahc5|Mdnah5|b2b1134Clo|b2b1154Clo|b2b1537Clo|b2b1565Clo|b2b3491Clo|b2b601Clo|mKIAA1603	dynein, axonemal, heavy chain 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-44130145-2	chr17	44130045	44130245	+	579.416626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-24336.0	NM_001357996	224794.0	Mm.255971	NM_199016	ENSMUSG00000023961	Enpp4	4933413N07Rik|AA986363|AI195364|E-NPP 4|Gm90	ectonucleotide pyrophosphatase/phosphodiesterase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-54386559-2	chr14	54386459	54386659	+	786.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_011405, intron 4 of 11)	intron (NM_011405, intron 4 of 11)	22913.0	NM_001253680	20540.0	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-77252251-4	chr5	77252086	77252286	+	633.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13308.0	NM_011263	19712.0	Mm.28840	NM_011263	ENSMUSG00000029249	Rest	2610008J04Rik|AA407358|NRSF|REST4	RE1-silencing transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-155592762-4	chr2	155592664	155592864	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008180)	promoter-TSS (NM_008180)	46.0	NM_001291111	14854.0	Mm.252316	NM_008180	ENSMUSG00000027610	Gss	AI314904|GS-A/GS-B|GSH-S	glutathione synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-21126846-4	chr19	21126744	21126944	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22134.0	NR_126458	75354.0	Mm.243873	NR_126458		4930554I06Rik	-	RIKEN cDNA 4930554I06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-48875964-2	chr7	48875864	48876064	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013368, intron 4 of 12)	intron (NM_001013368, intron 4 of 12)	5077.0	NM_001013368	108961.0	Mm.240566	NM_001013368	ENSMUSG00000046179	E2f8	4432406C08Rik|AA410048	E2F transcription factor 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-163516650-4	chr2	163516536	163516736	+	917.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001312906, intron 1 of 10)	intron (NM_001312906, intron 1 of 10)	9779.0	NM_001312907	15378.0	Mm.202383	NM_008261	ENSMUSG00000017950	Hnf4a	HNF-4|Hnf4|Hnf4alpha|MODY1|Nr2a1|TCF-14|Tcf14	hepatic nuclear factor 4, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-164858327-4	chr2	164858217	164858417	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011125)	promoter-TSS (NM_011125)	-609.0	NM_011125	18830.0	Mm.6105	NM_011125	ENSMUSG00000017754	Pltp	Bpife|OD107	phospholipid transfer protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-77800117-4	chr18	77800032	77800232	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013831, intron 1 of 14)	intron (NM_013831, intron 1 of 14)	-3742.0	NR_152167	619308.0	Mm.490456	NM_001033812		F830208F22Rik	-	RIKEN cDNA F830208F22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-51326967-4	chr3	51326834	51327034	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023502, intron 1 of 9)	MTC|LTR|ERVL-MaLR	13710.0	NM_001356358	69257.0	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-18876595-4	chr16	18876501	18876701	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010922)	promoter-TSS (NM_010922)	36.0	NM_010922	18100.0	Mm.20918	NM_010922	ENSMUSG00000022706	Mrpl40	Nlvcf	mitochondrial ribosomal protein L40	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-120159585-2	chr2	120159469	120159669	+	779.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-4994.0	NM_133838	98878.0	Mm.132226	NM_133838	ENSMUSG00000027293	Ehd4	2210022F10Rik|AI197390|AI846352|AV006278|Past2	EH-domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-41033550-4	chr14	41033440	41033640	+	680.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19707.0	NM_001316737	70564.0	Mm.27227	NM_027464	ENSMUSG00000021792	Fam213a	5730469M10Rik|AU040822|Adrx|Pamm	family with sequence similarity 213, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-57554721-2	chr16	57554622	57554822	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177871, intron 1 of 1)	intron (NM_001177871, intron 1 of 1)	5480.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0.632354343992151	0.256894404217535	1.13420251005768	0.24382804401559	0.52511169244384	0.258547816878188	0.73853273682464	0.244826875631714	-0.990553787233252	0.603787360061773	1
Merged-chr4-16087834-2	chr4	16087734	16087934	+	634.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73946.0	NM_145950	209212.0	Mm.46455	NM_145950	ENSMUSG00000041153	Osgin2	BC010311|C230027H09Rik	oxidative stress induced growth inhibitor family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-25760032-4	chr5	25759957	25760157	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310504)	promoter-TSS (NM_001310504)	84.0	NM_001004365	242894.0	Mm.150319	NM_001004365	ENSMUSG00000056367	Actr3b	9630005C02|ARP11|AW047569|Arp3b|Arp3beta	ARP3 actin-related protein 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-43522808-1	chr19	43522708	43522908	+	574.0	f1_c57bl6.idr	intron (NM_010324, intron 1 of 8)	intron (NM_010324, intron 1 of 8)	1797.0	NM_010324	14718.0	Mm.19039	NM_010324	ENSMUSG00000025190	Got1	AI789014|Got-1|cAspAT|cCAT	glutamic-oxaloacetic transaminase 1, soluble	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-87749660-4	chr11	87749591	87749791	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7173.0	NR_029555	387160.0		NR_029555	ENSMUSG00000105196	Mir142	Mirn142|miR-142|mir-142a|mmu-mir-142|mmu-mir-142a	microRNA 142	ncRNA	6.00226195080477	6.26193635106673	5.52873803007171	6.35663181068679	6.13138390209687	6.46279231744561	5.92386533718563	5.88184856043061	0.0480925202129793	0.847802276442808	0.998431161219273
Merged-chr16-74412074-1	chr16	74411974	74412174	+	603.0	f1_balb.idr	promoter-TSS (NM_175549)	promoter-TSS (NM_175549)	-249.0	NM_175549	268902.0	Mm.171736	NM_175549	ENSMUSG00000052516	Robo2	2600013A04Rik|9430089E08Rik|BB097918|D230004I22Rik|mKIAA1568	roundabout guidance receptor 2	protein-coding	-1.52696403314699	-1.49523967873556	-1.5048333853602	-1.51271394162622	-1.52473704212565	-1.49316068248889	-1.50266158046844	-1.06847079017215	2.01069003169785	0.564432837776867	1
Merged-chr6-140624209-4	chr6	140624135	140624335	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001309437)	promoter-TSS (NM_001309437)	-674.0	NM_001309437	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-75790551-4	chr14	75790449	75790649	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F2|LTR|ERVL-MaLR	-3512.0	NM_026232	67554.0	Mm.46067	NM_026232	ENSMUSG00000022003	Slc25a30	4933433D23Rik|AV025504|AV221431|AW319655|KMCP1	solute carrier family 25, member 30	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69683909-2	chr11	69683809	69684009	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001034097, exon 12 of 13)	exon (NM_001034097, exon 12 of 13)	1645.0	NM_001159505	69583.0	Mm.8983	NM_023517	ENSMUSG00000089669	Tnfsf13	2310026N09Rik|April|Tall2|Tnlg7b|Trdl1	tumor necrosis factor (ligand) superfamily, member 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-9982001-1	chr19	9981901	9982101	+	698.0	f1_c57bl6.idr	promoter-TSS (NM_010239)	promoter-TSS (NM_010239)	-645.0	NM_010239	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-36582001-4	chr5	36581908	36582108	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113362, intron 2 of 14)	CpG	389.0	NM_133910	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	0.175524462920532	0.266500338192398	1.99569923588736	0.216138502032374	0.181824688072224	0.272497909152401	2.8342977006094	0.22019016899931	1.24480017344117	0.703394744086434	0.998431161219273
Merged-chr2-28537126-2	chr2	28537026	28537226	+	842.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145836, intron 1 of 17)	B1_Mus1|SINE|Alu	3662.0	NM_001145836	19730.0	Mm.5236	NM_009058	ENSMUSG00000026821	Ralgds	Gnds|Rgds|mKIAA1308	ral guanine nucleotide dissociation stimulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28350022-3	chr7	28349881	28350081	+	791.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013647)	promoter-TSS (NM_013647)	-708.0	NM_013647	20055.0	Mm.702	NM_013647	ENSMUSG00000037563	Rps16	AA420385|AI317031	ribosomal protein S16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-94057793-3	chr13	94057593	94057793	+	876.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172589)	promoter-TSS (NM_172589)	-103.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-121499801-2	chr3	121499701	121499901	+	595.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145394, intron 9 of 14)	B4|SINE|B4	32543.0	NM_145394	213603.0	Mm.33062	NM_145394	ENSMUSG00000039865	Slc44a3	BC010552	solute carrier family 44, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34260776-2	chr17	34260674	34260874	+	931.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-2453.0	NM_207105	14961.0	Mm.254067	NM_207105	ENSMUSG00000073421	H2-Ab1	AI845868|Abeta|H-2Ab|H2-Ab|I-Abeta|IAb|Ia-2|Ia2|Rmcs1	histocompatibility 2, class II antigen A, beta 1	protein-coding	2.81338595370204	3.54324363185805	1.65394610483478	3.40522253202959	2.93501888611054	3.85433526574675	3.28320093228027	3.62320356819087	0.691261705199161	0.313643213749269	0.81522774665592
Merged-chr11-94372821-2	chr11	94372629	94372829	+	792.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029600, intron 7 of 30)	intron (NM_029600, intron 7 of 30)	20247.0	NM_029600	76408.0	Mm.23942	NM_029600	ENSMUSG00000020865	Abcc3	1700019L09Rik|ABC31|MLP2|MOAT-D|MRP3	ATP-binding cassette, sub-family C (CFTR/MRP), member 3	protein-coding	-1.8429182434137	-1.8129848525291	-1.82203695700074	-1.54461076807193	-1.84081697472045	-1.81102322372834	-1.81998775896484	-1.82814164409203	-1.43114970378833	0.684630132144154	1
Merged-chr10-117833727-2	chr10	117833627	117833827	+	682.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_024457, intron 1 of 7)	intron (NM_024457, intron 1 of 7)	12247.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-173939488-2	chr1	173939390	173939590	+	570.75	f0_c57.idr|f1_balb.idr	intron (NM_001302649, intron 2 of 9)	intron (NM_001302649, intron 2 of 9)	3002.0	NM_001302649	15950.0	Mm.463437	NM_008328	ENSMUSG00000039997	Ifi203	Ifi203a|Ifi203b|Mndal	interferon activated gene 203	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-95669295-2	chr1	95669195	95669395	+	979.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1701.0	NM_001159745	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-113514483-2	chr13	113514383	113514583	+	578.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	-11639.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-64279396-3	chr15	64279319	64279519	+	837.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 3 of 28)	intron (NM_001276461, intron 3 of 28)	33254.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70653325-4	chr11	70653215	70653415	+	958.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011072, intron 1 of 2)	G-rich|Low_complexity|Low_complexity	1335.0	NM_011072	18643.0	Mm.2647	NM_011072	ENSMUSG00000018293	Pfn1	Pfn	profilin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91819775-2	chr16	91819675	91819875	+	575.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110276, intron 12 of 15)	MTB_Mm|LTR|ERVL-MaLR	90404.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-115709994-4	chr4	115709912	115710112	+	800.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28061.0	NM_172698	230648.0	Mm.283565	NM_172698	ENSMUSG00000034210	Efcab14	4732418C07Rik	EF-hand calcium binding domain 14	protein-coding	2.89095566770501	2.18274304548943	1.93351813192169	2.55753367693241	2.77975547019856	2.74184551365692	1.73500618412142	2.84023839274517	0.305208935329977	0.711250933140907	0.998431161219273
Merged-chr10-77253011-3	chr10	77252911	77253111	+	965.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6212.0	NR_026944	100169878.0	Mm.420901	NR_026944	ENSMUSG00000078444	Gm10941	-	predicted gene 10941	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-74809232-3	chr13	74809125	74809325	+	607.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001301153)	promoter-TSS (NM_001301153)	-465.0	NM_001301153	12380.0	Mm.29163	NM_009817	ENSMUSG00000021585	Cast	-	calpastatin	protein-coding	-0.734697168562934	-1.28094420828655	-1.29131886204401	-1.29984091153697	-1.31008363841169	-1.2786959775384	-1.28897026783925	-1.29831546875223	-2.42902550944018	0.482518537989684	1
Merged-chr2-90501030-2	chr2	90500930	90501130	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	ORR1C2|LTR|ERVL-MaLR	-21856.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-63082776-1	chr14	63082676	63082876	+	1000.0	f1_balb.idr	Intergenic	L1_Mus3|LINE|L1	27703.0	NR_046019	72609.0	Mm.387101	NR_046019		2700070H01Rik	-	RIKEN cDNA 2700070H01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-86142684-2	chr15	86142499	86142699	+	762.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_145475, intron 12 of 12)	intron (NM_145475, intron 12 of 12)	-43129.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	0.447114564666701	0.132894100309817	0.414137790831621	0.125373870676835	0.454820308014028	0.677135074193459	0.129566925990857	0.125940782251091	0.68005597691435	0.740751803357443	1
Merged-chr10-89584842-2	chr10	89584724	89584924	+	884.625	f0_c57.idr|f1_c57bl6.idr	intron (NM_001310710, intron 7 of 9)	intron (NM_001310710, intron 7 of 9)	14991.0	NM_001310710	216227.0	Mm.233921	NM_182959	ENSMUSG00000019935	Slc17a8	BC042593|Vglut3	solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 8	protein-coding	4.01180354325955	3.6778133122095	3.6979447518427	4.20667112220532	2.6489504392456	2.30332513281273	2.75394322693635	2.7968747912446	-2.06369380941459	0.000367987258703254	0.00867977286354189
Merged-chr1-180419038-2	chr1	180418938	180419138	+	597.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081175, intron 5 of 7)	intron (NM_001081175, intron 5 of 7)	64466.0	NM_001081227	381310.0	Mm.44791	NM_001081227	ENSMUSG00000053963	Stum	6330403A02Rik|Gm10001|R75555	mechanosensory transduction mediator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-134653072-4	chr4	134652957	134653157	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207237, intron 1 of 11)	L2b|LINE|L2	51233.0	NM_207237	230815.0	Mm.18905	NM_207237	ENSMUSG00000037306	Man1c1	AI593348	mannosidase, alpha, class 1C, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-45904922-4	chr13	45904895	45905095	+	797.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199304, intron 2 of 6)	intron (NM_001199304, intron 2 of 6)	59996.0	NM_001199304	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-40806573-4	chr9	40806485	40806685	+	774.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5312.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46039656-4	chr19	46039573	46039773	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010697)	promoter-TSS (NM_010697)	-52.0	NM_010697	16825.0	Mm.327442	NM_010697	ENSMUSG00000025223	Ldb1	CLIM2|NLI	LIM domain binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-83165999-2	chr15	83165899	83166099	+	703.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029787, intron 2 of 8)	intron (NM_029787, intron 2 of 8)	6209.0	NM_029787	109754.0	Mm.22560	NM_029787	ENSMUSG00000018042	Cyb5r3	0610016L08Rik|2500002N19Rik|C85115|Dia-1|Dia1|WU:AL591952.1-001|WU:AL591952.1-002|WU:AL591952.1-003|WU:Cyb5r3	cytochrome b5 reductase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-17454828-4	chr17	17454761	17454961	+	990.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025681, intron 5 of 5)	intron (NM_025681, intron 5 of 5)	52175.0	NM_025681	66643.0	Mm.268018	NM_025681	ENSMUSG00000047786	Lix1	5730466L18Rik	limb and CNS expressed 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-58489738-4	chr2	58489633	58489833	+	836.94165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355048, intron 3 of 10)	intron (NM_001355048, intron 3 of 10)	71677.0	NM_001355049	11477.0	Mm.689	NM_007394	ENSMUSG00000026836	Acvr1	ALK2|ActR-I|ActRIA|Acvr|Acvrlk2|Alk-2|Alk8|D330013D15Rik|SKR1|Tsk7L	activin A receptor, type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-105801384-4	chr1	105801287	105801487	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009399, intron 1 of 9)	intron (NM_009399, intron 1 of 9)	20664.0	NM_009399	21934.0	Mm.6251	NM_009399	ENSMUSG00000026321	Tnfrsf11a	Ly109|ODFR|OFE|Rank|TRANCE-R|mRANK	tumor necrosis factor receptor superfamily, member 11a, NFKB activator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-39580167-2	chr1	39580067	39580267	+	860.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C|LTR|ERVK	-2820.0	NM_001033135	67702.0	Mm.28614	NM_001033135	ENSMUSG00000048234	Rnf149	1600023E10Rik|AV037261|C76763|Gm15832|Greul4	ring finger protein 149	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-29009303-2	chr7	29009203	29009403	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009109, intron 99 of 105)	intron (NM_009109, intron 99 of 105)	26449.0	NM_008279	26411.0	Mm.148278	NM_008279	ENSMUSG00000037337	Map4k1	Hpk1|mHPK1	mitogen-activated protein kinase kinase kinase kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-117724227-3	chr12	117724207	117724407	+	844.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175930, intron 19 of 27)	intron (NM_175930, intron 19 of 27)	-119554.0	NM_146040	217946.0	Mm.281149	NM_146040	ENSMUSG00000021175	Cdca7l	BC006933|JPO2	cell division cycle associated 7 like	protein-coding	-0.796910895548044	-0.787503743199393	-0.790592935285052	-0.792971587015705	-0.651071815653774	-0.590077702184159	-0.214902244324802	-0.792556346039003	3.12989821770312	0.252066199862424	1
Merged-chr4-123928160-4	chr4	123928063	123928263	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017475, intron 5 of 6)	intron (NM_017475, intron 5 of 6)	10730.0	NM_017475	54170.0	Mm.220922	NM_017475	ENSMUSG00000028646	Rragc	AU041672|Gtr2|RAGC|TIB929|YGR163W	Ras-related GTP binding C	protein-coding	4.63424744794397	3.80231893354103	4.96932011586801	4.63856369035208	3.83628288844063	3.52522071253493	4.08637374416794	4.027772239426	-0.911527550043201	0.0363028842364704	0.270311546381364
Merged-chr10-127671796-3	chr10	127671599	127671799	+	818.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	4576.0	NR_045171	72243.0	Mm.482902	NR_045171	ENSMUSG00000040195	1700012D01Rik	-	RIKEN cDNA 1700012D01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44236840-2	chr9	44236740	44236940	+	792.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2794.0	NM_007619	12402.0	Mm.266871	NM_007619	ENSMUSG00000034342	Cbl	4732447J05Rik|Cbl-2|c-Cbl|cbl	Casitas B-lineage lymphoma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-100527906-2	chr12	100527806	100528006	+	796.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7084.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-43545875-4	chr2	43545784	43545984	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR25C|LTR|ERVK	-9441.0	NM_001289593	70789.0	Mm.105278	NM_027552	ENSMUSG00000026866	Kynu	4432411A05Rik	kynureninase (L-kynurenine hydrolase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10041695-3	chr19	10041598	10041798	+	730.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_021890, exon 1 of 12)	5' UTR (NM_021890, exon 1 of 12)	150.0	NM_021890	60527.0	Mm.253875	NM_021890	ENSMUSG00000024664	Fads3	AI464531	fatty acid desaturase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-78413016-4	chr10	78412914	78413114	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010925)	promoter-TSS (NM_010925)	29.0	NM_010925	18114.0	Mm.38344	NM_010925	ENSMUSG00000061032	Rrp1	AL033305|AL033306|AU018604|NNP-1|Nnp1	ribosomal RNA processing 1 homolog (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141367622-2	chr7	141367522	141367722	+	778.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-2512.0	NR_033532	320871.0	Mm.475463	NM_177280	ENSMUSG00000086844	B230206H07Rik	-	RIKEN cDNA B230206H07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-135632437-2	chr1	135632337	135632537	+	752.083374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34661.0	NR_151586	215714.0	Mm.472859	NM_175447		Gm4793	EG215714	predicted gene 4793	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59530848-4	chr15	59530741	59530941	+	963.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026746, intron 4 of 6)	intron (NM_026746, intron 4 of 6)	-117813.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	1.41898477676843	1.83972838012624	0.554818902916913	0.543829298920105	0.881634203831602	0.571859104909727	1.27363462004897	0.545764465366282	-1.43672132349404	0.378763859492047	0.871466783339092
Merged-chr17-35749414-4	chr17	35749248	35749448	+	920.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-23102.0	NR_045459	74601.0	Mm.410840	NR_045459	ENSMUSG00000092171	4833427F10Rik	-	RIKEN cDNA 4833427F10 gene	ncRNA	2.55255332101383	2.22483876347704	2.02334498296844	2.38918432178566	1.60773897296076	1.31469157178606	2.03888638209725	2.10047216493712	-1.32974630133449	0.162884046374867	0.62517043774973
Merged-chr11-16981480-2	chr11	16981380	16981580	+	605.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019549, intron 9 of 9)	intron (NM_019549, intron 9 of 9)	27238.0	NM_019549	56193.0	Mm.98232	NM_019549	ENSMUSG00000020120	Plek	2010300B13Rik	pleckstrin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-79891632-4	chr15	79891542	79891742	+	929.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001160415)	promoter-TSS (NM_001160415)	-766.0	NM_001160415	80287.0	Mm.284059	NM_030255	ENSMUSG00000009585	Apobec3	Apobec|Arp3|BC003314|Cem15|Gm20117|Rfv3	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 3	protein-coding	4.80202226526913	4.15179852387222	2.94137776209604	4.87352378890841	4.45811470871422	3.36179968344352	4.04651591375681	3.6284710111277	-0.584734316831409	0.26683843502274	0.769853847164169
Merged-chr2-127462571-2	chr2	127462471	127462671	+	629.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111331, intron 4 of 7)	intron (NM_001111331, intron 4 of 7)	-18006.0	NM_029629	68126.0	Mm.288676	NM_029629	ENSMUSG00000027371	Fahd2a	1500003K14Rik|B430104H02Rik|Cgi-105|Fahd2	fumarylacetoacetate hydrolase domain containing 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-95489123-1	chr13	95489023	95489223	+	623.0	f0_c57.idr	Intergenic	L4_B_Mam|LINE|RTE-X	-10468.0	NM_001081159	268686.0	Mm.291249	NM_001081159	ENSMUSG00000021679	S100z	Gm625	S100 calcium binding protein, zeta	protein-coding	2.19646156211591	1.99698414634343	1.90967542704918	0.606689805975037	0.581098069777243	0.650424448687694	0.628884482568094	0.609763273633774	-5.3243407759694	0.00072374232543171	0.014969685974189
Merged-chr12-72364733-3	chr12	72364622	72364822	+	825.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153457, intron 1 of 8)	MTD|LTR|ERVL-MaLR	44332.0	NM_001286448	104001.0	Mm.221275	NM_153457	ENSMUSG00000021087	Rtn1	Nsp	reticulon 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128777401-2	chr2	128777301	128777501	+	856.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 10 of 18)	intron (NM_008587, intron 10 of 18)	-40902.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	-2.18243820993087	-2.15538464093652	-2.16356586349869	-2.17028616330028	-2.18053909940952	-2.15361173587851	-2.16171381403791	-2.0403552525549	0.759018020146679	0.829933115115583	1
Merged-chr16-32251992-2	chr16	32251892	32252092	+	594.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_001185162, exon 2 of 3)	exon (NM_001185162, exon 2 of 3)	4739.0	NM_026898	68980.0	Mm.159860	NM_026898	ENSMUSG00000022787	Wdr53	1500002B03Rik|AI848860	WD repeat domain 53	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100182589-4	chr7	100182488	100182688	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001190869, intron 3 of 4)	intron (NM_001190869, intron 3 of 4)	3905.0	NM_001190871	57442.0	Mm.282386	NM_020574	ENSMUSG00000035165	Kcne3	2210017H05Rik|MiRP2	potassium voltage-gated channel, Isk-related subfamily, gene 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-72834797-4	chr17	72834736	72834936	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1792.0	NM_027166	383295.0	Mm.277533	NM_027166	ENSMUSG00000039770	Ypel5	2310076K21Rik|CGI-127	yippee like 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-81618185-4	chr6	81618096	81618296	+	918.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	277467.0	NR_106091	102465711.0		NR_106091	ENSMUSG00000106154	Mir7232	mmu-mir-7232	microRNA 7232	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70594399-4	chr11	70594289	70594489	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016713, intron 1 of 30)	intron (NM_016713, intron 1 of 30)	-21505.0	NM_001145537	668433.0	Mm.425687	NM_001145537	ENSMUSG00000087279	4930544D05Rik	-	RIKEN cDNA 4930544D05 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-54093270-4	chr11	54093196	54093396	+	871.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7628.0	NM_001136076	18452.0	Mm.3705	NM_011031	ENSMUSG00000018906	P4ha2	AA407196|C76437|P4hl	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-136253035-4	chr3	136252943	136253143	+	991.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033350, intron 3 of 16)	intron (NM_001033350, intron 3 of 16)	73023.0	NM_001310749	242248.0	Mm.30832	NM_001033350	ENSMUSG00000037922	Bank1	A530094C12Rik|AI451642|AVIEF|BANK	B cell scaffold protein with ankyrin repeats 1	protein-coding	3.21224762996628	4.1318898691888	3.66195691129347	4.96028196282343	2.95539531987205	3.5546768702305	2.83902028235723	3.12005229233578	-1.48348894693455	0.0103721247329088	0.111643019628086
Merged-chr16-4939086-4	chr16	4938978	4939178	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025839)	promoter-TSS (NM_025839)	-33.0	NM_001316715	66911.0	Mm.428698	NM_025839	ENSMUSG00000022516	Nudt16l1	1110001K21Rik|5330437I08Rik|Sdos	nudix (nucleoside diphosphate linked moiety X)-type motif 16-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-53297119-4	chr1	53297050	53297250	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153556)	promoter-TSS (NM_153556)	55.0	NM_145517	227102.0	Mm.212846	NM_145517	ENSMUSG00000026097	Ormdl1	C730042F17Rik	ORM1-like 1 (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32776283-2	chr2	32776183	32776383	+	968.833374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290567)	promoter-TSS (NM_001290567)	462.0	NM_178595	329384.0	Mm.268037	NM_178595	ENSMUSG00000053746	Ptrh1	2210013M04Rik|AW046744	peptidyl-tRNA hydrolase 1 homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-31964568-1	chr4	31964468	31964668	+	541.0	f0_c57.idr	intron (NM_009316, intron 1 of 16)	intron (NM_009316, intron 1 of 16)	461.0	NM_172688	26409.0	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding	1.78930809938818	2.50265115652376	0.96931713282093	2.97905437257182	0.905717774319244	2.06838970010812	1.4888615672119	0.948336043469056	-2.05189681364815	0.0906066929178617	0.464837130114811
Merged-chr6-97438394-2	chr6	97438294	97438494	+	599.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	B4|SINE|B4	20892.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-160725991-2	chr2	160725891	160726091	+	986.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5319.0	NM_021280	18803.0	Mm.44463	NM_021280	ENSMUSG00000016933	Plcg1	AI894140|Cded|Plc-1|Plc-gamma1|Plcg-1	phospholipase C, gamma 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-64853150-4	chr16	64853048	64853248	+	883.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357416, intron 2 of 2)	intron (NM_001357416, intron 2 of 2)	1147.0	NM_178647	106143.0	Mm.10160	NM_178647	ENSMUSG00000054604	Cggbp1	AA960172|AL023996|AW045841	CGG triplet repeat binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-113955999-3	chr6	113955916	113956116	+	689.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009723, intron 2 of 21)	intron (NM_009723, intron 2 of 21)	-21335.0	NM_001347365	11941.0	Mm.321755	NM_009723	ENSMUSG00000030302	Atp2b2	D6Abb2e|Gena300|PMCA2|Tmy|dfw|jog|wms|wri	ATPase, Ca++ transporting, plasma membrane 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85912536-2	chr12	85912436	85912636	+	995.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347395, intron 18 of 32)	intron (NM_001347395, intron 18 of 32)	87586.0	NM_001081423	320244.0	Mm.132172	NM_177114	ENSMUSG00000012609	Ttll5	1700048H13Rik|2310009M18Rik|4930556H18Rik|AI428864|D630041K24Rik|R75373|Stamp|mKIAA0998	tubulin tyrosine ligase-like family, member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-67451190-1	chr13	67451090	67451290	+	884.0	f1_balb.idr	intron (NM_177712, intron 1 of 3)	intron (NM_177712, intron 1 of 3)	434.0	NM_177712	238692.0	Mm.486478	NM_177712	ENSMUSG00000069206	Zfp874a	C330011K17Rik|Rslcan15|Zfp874	zinc finger protein 874a	protein-coding	2.24230359761447	2.87037849166063	1.46975883203588	2.48616541783261	3.08452819422491	2.53931697355535	3.13330842994907	2.37752205545396	0.936672195633746	0.250613400652017	0.748509191602971
Merged-chr15-99018270-3	chr15	99018182	99018382	+	725.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11609.0	NM_009448	22146.0	Mm.88212	NM_009448	ENSMUSG00000043091	Tuba1c	M[a]6|Tuba6	tubulin, alpha 1C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41981381-4	chr19	41981259	41981459	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145500)	promoter-TSS (NM_145500)	-223.0	NM_028152	72199.0	Mm.218940	NM_028152	ENSMUSG00000025159	Mms19	2410001K24Rik|2610042O15Rik|AI316855|C79368|C86341|Mms19l	MMS19 (MET18 S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-51008036-2	chr9	51007936	51008136	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178710, intron 1 of 15)	intron (NM_178710, intron 1 of 15)	1037.0	NM_178710	235344.0	Mm.104932	NM_178710	ENSMUSG00000037112	Sik2	G630080D20Rik|Snf1lk2	salt inducible kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55714114-4	chr19	55713984	55714184	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11880.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	4.41308261126089	4.81402620332184	4.75560844800867	4.67587288669995	4.71674389431067	4.58749866280017	5.40392518191312	4.36659991072809	0.195348816009492	0.597068803859746	0.971902489067841
Merged-chr8-83722055-3	chr8	83722115	83722315	+	893.625	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197982, intron 6 of 10)	intron (NM_197982, intron 6 of 10)	1769.0	NR_106188	102465897.0		NR_106188	ENSMUSG00000098465	Mir1668	Gm27590|mmu-mir-1668	microRNA 1668	ncRNA	-0.499940950918087	-0.487518524828365	0.0891561271406926	-0.494726023626598	-0.499164980458282	-0.486601867615524	0.100277611126392	-0.494177430718284	0.0410194320726077	0.98816738256539	1
Merged-chr3-78919674-4	chr3	78919581	78919781	+	999.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	225206.0	NM_001310536	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127778842-2	chr7	127778742	127778942	+	708.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178029, intron 3 of 18)	intron (NM_178029, intron 3 of 18)	1453.0	NM_178029	233904.0	Mm.435494	NM_010940	ENSMUSG00000042308	Setd1a	BC010250|KMT2F|Nsccn1|mKIAA0339|mNSC1	SET domain containing 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-10005838-2	chr8	10005738	10005938	+	655.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347309)	promoter-TSS (NM_001347309)	-629.0	NM_001347309	24099.0	Mm.28835	NM_033622	ENSMUSG00000031497	Tnfsf13b	BAFF|BLyS|D8Ertd387e|TALL-1|TALL1|THANK|TNFSF20|Tnlg7a|zTNF4	tumor necrosis factor (ligand) superfamily, member 13b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16175351-4	chr7	16175266	16175466	+	987.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302472)	promoter-TSS (NM_001302472)	-29.0	NM_001277988	17537.0	Mm.360516	NM_008627	ENSMUSG00000041420	Meis3	AI573393|Mrg2	Meis homeobox 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-24427052-2	chr16	24426952	24427152	+	783.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 1 of 12)	RMER15|LTR|ERVL	-21039.0	NM_001145952	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-4333547-3	chr10	4333441	4333641	+	833.733337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031185, intron 2 of 3)	intron (NM_031185, intron 2 of 3)	53934.0	NM_001359811	381990.0	Mm.262466	NM_001033466	ENSMUSG00000075327	Zbtb2	Gm1103	zinc finger and BTB domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-135132610-4	chr1	135132509	135132709	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356382)	promoter-TSS (NM_001356382)	-34.0	NM_007955	13924.0	Mm.4450	NM_007955		Ptprv	Esp|OST|OST-PTP	protein tyrosine phosphatase, receptor type, V	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-19663424-2	chr5	19663324	19663524	+	806.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001170746, intron 1 of 22)	intron (NM_001170746, intron 1 of 22)	-244094.0	NM_001170745	50791.0	Mm.332231	NM_015823	ENSMUSG00000040003	Magi2	AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705	membrane associated guanylate kinase, WW and PDZ domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115164051-6	chr11	115163925	115164125	+	929.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012030, intron 1 of 5)	CpG	684.0	NM_012030	26941.0	Mm.27842	NM_012030	ENSMUSG00000020733	Slc9a3r1	EBP-50|NHE-RF|NHERF-1|NHERF1	solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 1	protein-coding	3.71759105388689	3.03363121029884	4.12600548652688	4.33052136073924	3.28976450975935	3.05793413959924	1.72358738122624	4.26870019432493	-0.736622412253915	0.272432881090361	0.775631299106725
Merged-chr10-127573895-1	chr10	127573795	127573995	+	549.0	f1_c57bl6.idr	intron (NM_008512, intron 28 of 88)	intron (NM_008512, intron 28 of 88)	-39336.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	0.589125620531482	0.231399428182139	0.224966060690938	0.385250063497389	0.59787514775744	0.430291208160981	1.00276332027888	0.220864367008788	1.54412518490662	0.405662725969445	1
Merged-chr13-46929499-3	chr13	46929382	46929582	+	742.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010617, intron 1 of 37)	CpG	236.0	NM_010617	16553.0	Mm.342703	NM_010617	ENSMUSG00000021375	Kif13a	4930505I07Rik|mKIAA4109	kinesin family member 13A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-27333851-2	chr7	27333761	27333961	+	562.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310678)	promoter-TSS (NM_001310678)	-198.0	NM_001310678	108075.0	Mm.272251	NM_175641	ENSMUSG00000040488	Ltbp4	2310046A13Rik	latent transforming growth factor beta binding protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-146564486-4	chr3	146564443	146564643	+	861.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32606.0	NM_009474	22262.0	Mm.10865	NM_009474	ENSMUSG00000028186	Uox	AI663847	urate oxidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-18840224-2	chr7	18840124	18840324	+	766.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153760, intron 1 of 4)	RMER10B|LTR|ERVL	258.0	NM_153760	243864.0	Mm.233503	NM_153760	ENSMUSG00000040987	Mill2	Micb	MHC I like leukocyte 2	protein-coding	1.29429053374849	1.24398192430431	1.61585108613679	0.680034123035746	1.20913104691979	1.10181130771061	0.691442073702844	0.681591561313791	-1.36670621291122	0.366022858116201	0.861036332257394
Merged-chr12-99566979-2	chr12	99566879	99567079	+	978.666626	f1_balb.idr|f1_c57bl6.idr	intron (NR_136760, intron 2 of 3)	intron (NR_136760, intron 2 of 3)	3138.0	NR_136760	102639404.0	Mm.396324	NR_136760	ENSMUSG00000097917	Gm26839	-	predicted gene, 26839	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-30976912-2	chr16	30976812	30977012	+	696.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_198626, intron 3 of 3)	intron (NM_198626, intron 3 of 3)	104520.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105938471-2	chr8	105938371	105938571	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013640)	promoter-TSS (NM_013640)	-79.0	NM_013640	19171.0	Mm.787	NM_013640	ENSMUSG00000031897	Psmb10	Mecl-1|Mecl1	proteasome (prosome, macropain) subunit, beta type 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-37042950-2	chr8	37042897	37043097	+	724.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-18759.0	NR_126063	414128.0	Mm.450976	NR_126063	ENSMUSG00000110242	G630064G18Rik	-	RIKEN cDNA G630064G18 gene	ncRNA	1.95393697497226	2.69696922555336	2.4358273569779	1.79555989127367	2.17199762433169	1.92380585689176	1.23986244497685	1.64123960248678	-1.22323562624814	0.214858712433111	0.70562267293042
Merged-chr12-24649583-1	chr12	24649483	24649683	+	647.0	f1_balb.idr	Intergenic	B4|SINE|B4	-1788.0	NM_178357	194655.0	Mm.9616	NM_178357	ENSMUSG00000020653	Klf11	9830142A17|D12Ertd427e|Tieg2|Tieg2b|Tieg3	Kruppel-like factor 11	protein-coding	0.619150662792235	1.01945898699495	0.480079124727472	1.05047259408062	0.462573929356328	0.880560434103155	0.482132183463301	1.34045882766758	0.183830822708485	0.912377529254013	1
Merged-chr17-87636829-3	chr17	87636694	87636894	+	800.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_008532, exon 2 of 10)	5' UTR (NM_008532, exon 2 of 10)	815.0	NM_008532	17075.0	Mm.4259	NM_008532	ENSMUSG00000045394	Epcam	CD326|EGP|EGP-2|Egp314|Ep-CAM|EpCAM1|GA733-2|Ly74|TROP1|Tacsd1|Tacstd1|gp40	epithelial cell adhesion molecule	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-91452476-1	chr13	91452376	91452576	+	634.0	f0_balb.idr	Intergenic	Intergenic	-8621.0	NM_024272	66970.0	Mm.343095	NM_024186	ENSMUSG00000003992	Ssbp2	1500004K09Rik|2310079I02Rik|9330163K02Rik|A830008M03Rik|AU067692|AW558684|Hspc116|SSDP2	single-stranded DNA binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-34421289-3	chr19	34421136	34421336	+	560.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53899.0	NM_009890	12642.0	Mm.30824	NM_009890	ENSMUSG00000050370	Ch25h	AI462618|m25OH	cholesterol 25-hydroxylase	protein-coding	1.26369331973627	1.46700154983072	0.658913488446435	0.645219145752868	0.831796409212542	0.679996634427734	2.22574081401645	1.2234789380068	1.1728316775944	0.4223283669238	0.900322118218157
Merged-chr13-4191173-4	chr13	4191079	4191279	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013778)	promoter-TSS (NM_013778)	-8.0	NM_013778	27384.0	Mm.27447	NM_013778	ENSMUSG00000021213	Akr1c13	mKIAA4014	aldo-keto reductase family 1, member C13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-34239579-3	chr15	34239429	34239629	+	857.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033521, intron 1 of 6)	intron (NM_033521, intron 1 of 6)	1503.0	NM_033521	114128.0	Mm.197518	NM_033521	ENSMUSG00000022257	Laptm4b	C330023P13Rik|LAPTM4beta	lysosomal-associated protein transmembrane 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-29291403-2	chr17	29291303	29291503	+	743.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030561, intron 4 of 8)	intron (NM_030561, intron 4 of 8)	22615.0	NM_030561	80748.0	Mm.290116	NM_030561	ENSMUSG00000052712	BC004004	2400006G15Rik	cDNA sequence BC004004	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-88274416-2	chr1	88274316	88274516	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198652, intron 3 of 7)	intron (NM_198652, intron 3 of 7)	3141.0	NM_172505	212427.0	Mm.384762	NM_172505		A730008H23Rik	Fleg1	RIKEN cDNA A730008H23 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-67839548-2	chr9	67839457	67839657	+	660.5	f0_balb.idr|f1_balb.idr	promoter-TSS (NM_177184)	promoter-TSS (NM_177184)	-839.0	NM_177184	320528.0	Mm.241454	NM_177184	ENSMUSG00000035284	Vps13c	AI552542|AV026040|C230055H22Rik|W51662|chorein	vacuolar protein sorting 13C	protein-coding	0.265998265990995	0.303064026366024	0.708360495956298	0.281885712318228	1.1821010483084	0.305697819309313	0.29385331471312	1.65706568698919	3.07048984170318	0.11044883592169	0.520793640554224
Merged-chr17-31305646-4	chr17	31305548	31305748	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001242427, intron 2 of 19)	intron (NM_001242427, intron 2 of 19)	9424.0	NM_001242427	224674.0	Mm.311395	NM_153062	ENSMUSG00000024036	Slc37a1	G3PP	solute carrier family 37 (glycerol-3-phosphate transporter), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100354759-2	chr11	100354659	100354859	+	627.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359052, intron 1 of 12)	intron (NM_001359052, intron 1 of 12)	1369.0	NM_001359052	15114.0	Mm.281700	NM_010404	ENSMUSG00000006930	Hap1	HAP-1	huntingtin-associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-68430686-4	chr11	68430597	68430797	+	960.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1428.0	NM_177320	320207.0	Mm.244960	NM_177320	ENSMUSG00000020901	Pik3r5	AV230647|F730038I15Rik|Foap2|p101	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-20430806-1	chr11	20430706	20430906	+	616.0	f1_balb.idr	Intergenic	Intergenic	-98093.0	NM_018861	55963.0	Mm.6379	NM_018861	ENSMUSG00000020142	Slc1a4	ASCT-1|ASCT1|AW045657|SATT	solute carrier family 1 (glutamate/neutral amino acid transporter), member 4	protein-coding	-1.28025741253843	-1.25296595648262	-1.2630259255951	-1.2712894837512	-1.0104656993792	-1.25078591920978	-1.26074856909628	-0.971423026503385	2.3133467066417	0.490836719666531	1
Merged-chr2-13407474-1	chr2	13407374	13407574	+	804.0	f0_balb.idr	intron (NM_001081084, intron 27 of 66)	intron (NM_001081084, intron 27 of 66)	84402.0	NM_001081084	65969.0	Mm.313915	NM_001081084	ENSMUSG00000026726	Cubn	AA408369|AL022750|D2Wsu88e	cubilin (intrinsic factor-cobalamin receptor)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34119415-4	chr17	34119289	34119489	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_037970, exon 1 of 13)	non-coding (NR_037970, exon 1 of 13)	511.0	NR_037970	14312.0	Mm.3444	NM_010238	ENSMUSG00000024335	Brd2	AW228947|D17H6S113E|Frg-1|Fsrg-1|Fsrg1|Nat|Ring3|Rnf3|mKIAA4005	bromodomain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-138135541-2	chr1	138135441	138135641	+	636.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001268286, intron 2 of 28)	L1MA4A|LINE|L1	39585.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-7345680-4	chr9	7345584	7345784	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001320077, intron 1 of 10)	intron (NM_001320077, intron 1 of 10)	1287.0	NM_001320077	17381.0	Mm.2055	NM_008605	ENSMUSG00000049723	Mmp12	AV378681|MME|Mmel	matrix metallopeptidase 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-121807116-4	chr2	121807012	121807212	+	980.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172673)	promoter-TSS (NM_172673)	-55.0	NM_172673	228564.0	Mm.121514	NM_172673	ENSMUSG00000027238	Frmd5	1500032A09Rik|A930004K21Rik|R75430	FERM domain containing 5	protein-coding	3.53065999131768	3.65592565501054	2.91932772849884	2.17146316520805	4.17805295952703	3.83782590080296	2.80432621261876	4.20407935374898	1.01296305713748	0.100289524246576	0.492741077768396
Merged-chr6-142792487-2	chr6	142792387	142792587	+	567.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145390, intron 3 of 5)	intron (NM_001145390, intron 3 of 5)	11979.0	NM_001145390	330440.0	Mm.484618	NM_001033417	ENSMUSG00000048473	Sult6b2	Gm766	sulfotransferase family 6B, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-45118302-2	chr17	45118202	45118402	+	895.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178652, intron 11 of 11)	intron (NM_178652, intron 11 of 11)	-237417.0	NM_029257	75341.0	Mm.386821	NM_029257		4930564C03Rik	-	RIKEN cDNA 4930564C03 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-21734281-4	chr13	21734172	21734372	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178210)	promoter-TSS (NM_178210)	-762.0	NM_178210	319159.0		NM_178210	ENSMUSG00000067455	Hist1h4j	-	histone cluster 1, H4j	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125422491-4	chr6	125422379	125422579	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-41975.0	NM_198604	213522.0	Mm.333396	NM_198604	ENSMUSG00000038167	Plekhg6	BC026778|Gm155	pleckstrin homology domain containing, family G (with RhoGef domain) member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-121841491-2	chr5	121841391	121841591	+	769.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4632.0	NM_008507	16923.0	Mm.65493	NM_008507	ENSMUSG00000042594	Sh2b3	AI429800|Lnk	SH2B adaptor protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-37689442-4	chr16	37689348	37689548	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11B|LTR|ERVK	-35080.0	NM_026610	68194.0	Mm.379154	NM_026610	ENSMUSG00000022820	Ndufb4	0610006N12Rik|1300010H20Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-49630626-2	chr4	49630526	49630726	+	734.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1434.0	NM_001163263	109331.0	Mm.24765	NM_182999	ENSMUSG00000028309	Rnf20	4833430L21Rik|AW540162|C79397|mKIAA4116	ring finger protein 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-16169800-2	chr4	16169700	16169900	+	722.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045765, intron 1 of 6)	MER90a|LTR|ERV1	5690.0	NR_045765	100415915.0	Mm.387180	NR_045765	ENSMUSG00000085112	A530072M11Rik	-	RIKEN cDNA gene A530072M11	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123670717-2	chr5	123670617	123670817	+	894.6999509999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359224, intron 1 of 18)	intron (NM_001359224, intron 1 of 18)	13644.0	NM_019765	56430.0	Mm.241109	NM_019765	ENSMUSG00000049550	Clip1	1110007I12Rik|4631429H07Rik|AV017631|C81039|CLIP-170|CLIP170|CYLN1|Clip50|Rsn|mKIAA4046|restin	CAP-GLY domain containing linker protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-35158042-4	chr4	35157933	35158133	+	838.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178061)	promoter-TSS (NM_178061)	-549.0	NM_178061	214944.0	Mm.32968	NM_178061	ENSMUSG00000073910	Mob3b	8430436F23Rik|A430018A01Rik|Mobkl2b	MOB kinase activator 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-143211751-6	chr4	143211607	143211807	+	832.861084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001256380, intron 1 of 7)	intron (NM_001256380, intron 1 of 7)	1002.0	NM_001081355	110593.0	Mm.332020	NM_001081355	ENSMUSG00000057637	Prdm2	4833427P12Rik|E330024L24Rik|Gm1033|Gm19732|KMT8|Riz|Riz1|Znfpr1c1	PR domain containing 2, with ZNF domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-58941074-1	chr3	58940974	58941174	+	853.0	f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-55862.0	NM_153386	229320.0	Mm.131502	NM_153384	ENSMUSG00000043850	Clrn1	A130002D11Rik|USH3|Ush3a|clarin-1	clarin 1	protein-coding	-0.856514135634246	-1.09469227775237	-1.10552271286179	-0.697223595536493	-1.11557875604084	-1.09234527728392	-1.10307093974939	-1.11268246321507	-2.58516358545631	0.423881157370444	1
Merged-chr2-153632725-4	chr2	153632642	153632842	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001195390)	promoter-TSS (NM_001195390)	39.0	NM_001195390	99311.0	Mm.294478	NM_133850	ENSMUSG00000056941	Commd7	2310010I22Rik|AW060956|mU3	COMM domain containing 7	protein-coding	5.28801269352643	4.88468657710007	4.17934994628157	5.49698023695525	5.23090534465	4.77225048317778	4.81265676665272	4.08128422893628	-0.319713275126568	0.413891716672446	0.89604345301985
Merged-chr17-24726089-2	chr17	24725964	24726164	+	761.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-1676.0	NM_026684	68342.0	Mm.1129	NM_026684	ENSMUSG00000040048	Ndufb10	0610011B04Rik|22kDa|PDSW	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 10	protein-coding	2.34377520900472	2.2178438532484	2.4604251571565	1.64104282621563	1.86531713118771	1.26746854121123	1.49155615081501	2.77855719211548	-0.443429881809441	0.662516377923839	0.991056031673253
Merged-chr15-100552037-4	chr15	100551910	100552110	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033476)	promoter-TSS (NM_033476)	-2.0	NM_001289603	21422.0	Mm.219040	NM_033476	ENSMUSG00000009733	Tfcp2	CP-2|CP2|D230015P20Rik|LBP-1c|LBP-1d|LBP1|LSF|Tcfcp2|UBP-1	transcription factor CP2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-75319680-2	chr10	75319580	75319780	+	638.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001331095, intron 1 of 2)	intron (NM_001331095, intron 1 of 2)	2080.0	NM_001331095	11540.0	Mm.333734	NM_009630	ENSMUSG00000020178	Adora2a	A2AAR|A2aR|AA2AR	adenosine A2a receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-137354515-1	chr4	137354415	137354615	+	707.0	f1_c57bl6.idr	intron (NM_009861, intron 1 of 5)	intron (NM_009861, intron 1 of 5)	3244.0	NM_009861	12540.0	Mm.1022	NM_009861	ENSMUSG00000006699	Cdc42	AI747189|AU018915	cell division cycle 42	protein-coding	0.418659921328156	1.4601054232884	1.48650576687812	1.42584664456665	0.421343908729067	0.463039788111005	0.449816446632461	0.438278130813526	-4.82334876886245	0.00626499656831248	0.078902129629055
Merged-chr3-136426741-4	chr3	136426650	136426850	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22599.0	NR_040592	70055.0	Mm.261063	NR_040592	ENSMUSG00000099508	1700030L20Rik	-	RIKEN cDNA 1700030L20 gene	ncRNA	1.18205006530717	1.4698873164033	1.38438202227091	1.31310996092356	5.10229604483529	4.69557624754979	4.97740803988277	5.08849985395308	7.93671662265797	2.2190958271092e-13	8.87490391121873e-11
Merged-chr8-68208046-4	chr8	68207937	68208137	+	708.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	-68491.0	NM_028182	72281.0	Mm.40974	NM_028182	ENSMUSG00000053886	Sh2d4a	2210402M20Rik|SH2A	SH2 domain containing 4A	protein-coding	2.24571177916479	1.92089614783543	2.53854387055022	1.97979987509521	2.53563788848105	2.92292102561954	2.4512102831862	1.8229529818731	0.673525326168953	0.425445735476128	0.901356553382266
Merged-chr11-107305913-2	chr11	107305813	107306013	+	780.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 4 of 9)	intron (NR_153311, intron 4 of 9)	-116532.0	NM_001161329	68979.0	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-3834716-2	chr11	3834616	3834816	+	793.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_152818, intron 1 of 13)	RMER1A|Other|Other	29187.0	NM_152818	74309.0	Mm.61022	NM_152818	ENSMUSG00000020435	Osbp2	1700095P05Rik|C630001G20Rik|Gm244|ORP-4|OSBPL1	oxysterol binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-76549374-3	chr12	76549207	76549407	+	810.200012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153804, intron 1 of 18)	L2c|LINE|L2	-1382.0	NR_046044	100504549.0	Mm.440349	NR_046044	ENSMUSG00000112388	AI463170	-	expressed sequence AI463170	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-119500112-1	chr6	119500012	119500212	+	711.0	f0_balb.idr	intron (NM_009525, intron 1 of 4)	intron (NM_009525, intron 1 of 4)	20444.0	NM_133940	101358.0	Mm.125477	NM_133940	ENSMUSG00000030019	Fbxl14	AW322056|Fbx14l	F-box and leucine-rich repeat protein 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-55198607-2	chr6	55198507	55198707	+	966.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4776.0	NM_177883	330323.0	Mm.268997	NM_177883	ENSMUSG00000038022	Mindy4	C330043M08Rik|Fam188b|Gm1406	MINDY lysine 48 deubiquitinase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-35939866-4	chr16	35939775	35939975	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001013371)	promoter-TSS (NM_001013371)	-848.0	NM_001013371	209200.0	Mm.390852	NM_001013371	ENSMUSG00000049502	Dtx3l	AU042200|BC023741	deltex 3-like, E3 ubiquitin ligase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135435562-2	chr4	135435462	135435662	+	552.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1757.0	NM_022980	53902.0	Mm.331970	NM_022980	ENSMUSG00000059713	Rcan3	AU041093|Csp3|Dscr1l2	regulator of calcineurin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-92485043-3	chr9	92484905	92485105	+	790.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178711, intron 6 of 8)	intron (NM_178711, intron 6 of 8)	27627.0	NM_178711	235527.0	Mm.55289	NM_178711	ENSMUSG00000032377	Plscr4	AV245873	phospholipid scramblase 4	protein-coding	2.37315911550845	3.21930814598425	2.82220154771911	2.02346527454683	2.62191621473454	3.40709321672558	3.29772033245227	2.85962135766799	0.727396136278968	0.304450676863395	0.806001593337822
Merged-chr3-9914750-3	chr3	9914641	9914841	+	769.827759	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-81062.0	NM_001195031	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	1.61350510388065	1.26627466390407	1.0097223625403	0.739130003017652	0.714435731239279	2.41884512948785	0.760658399880951	1.8366432233716	1.35942594200902	0.33051869384934	0.83197671091297
Merged-chr18-60859307-4	chr18	60859213	60859413	+	877.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10349.0	NM_001198984	21453.0	Mm.486251	NM_011552	ENSMUSG00000024613	Tcof1	AA408847|AW209012|treacle	treacle ribosome biogenesis factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-55519671-3	chr13	55519513	55519713	+	797.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6167.0	NM_001114088	67399.0	Mm.275648	NM_026131	ENSMUSG00000021493	Pdlim7	LMP	PDZ and LIM domain 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-157008861-3	chr1	157008762	157008962	+	977.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69236.0	NM_001357391	78255.0	Mm.28376	NM_023884	ENSMUSG00000026594	Ralgps2	1810020P17Rik|2210408F11Rik|4921528G01Rik|9130014M22Rik|AU043409|AW046161	Ral GEF with PH domain and SH3 binding motif 2	protein-coding	3.35370645667717	3.42673461326253	2.44145969976489	3.3843203587401	3.38076923959819	3.83942188147373	3.50584623546507	2.94029827865688	0.384983449778331	0.517123414718286	0.947641799425091
Merged-chr8-105291775-2	chr8	105291675	105291875	+	551.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357379, intron 8 of 12)	B2_Mm2|SINE|B2	-2247.0	NM_028888	74356.0	Mm.204876	NM_028888	ENSMUSG00000014837	4931428F04Rik	AI426165|Kiaa0895l	RIKEN cDNA 4931428F04 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-8875993-2	chr10	8875894	8876094	+	754.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 1 of 19)	ID_B1|SINE|B4	10076.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	2.26644897454334	2.55706992393893	1.36144294761998	2.27260968396072	3.30273718653087	2.98921030191253	1.6439251405002	2.40774389789143	1.13379819836273	0.208183536895881	0.696927433299671
Merged-chr15-84230810-1	chr15	84230710	84230910	+	651.666687	f1_balb.idr	Intergenic	Intergenic	-1233.0	NM_133167	170736.0	Mm.323892	NM_133167	ENSMUSG00000022438	Parvb	AI595373|AW742462|D15Gsk1|affixin	parvin, beta	protein-coding	0.736147117018137	1.15765899677815	0.955514152831609	1.21906452276931	1.16322246319097	1.16647060028889	1.69098570303241	1.0924117344304	1.22179766918449	0.360707532431635	0.856644690046469
Merged-chr2-4559665-4	chr2	4559572	4559772	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177844)	promoter-TSS (NM_001177844)	-82.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-119057936-1	chr10	119057836	119058036	+	548.0	f1_c57bl6.idr	Intergenic	Intergenic	-7437.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-146730067-2	chr5	146729967	146730167	+	570.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	64889.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-115537078-3	chr8	115536949	115537149	+	834.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	169845.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-54407607-3	chr14	54407558	54407758	+	766.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011405, intron 4 of 11)	(TA)n|Simple_repeat|Simple_repeat	1814.0	NM_001253680	20540.0	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	0.929295699738119	1.07811791259387	0.535809561867157	0.528204189635664	0.818465110658838	0.547767955816454	1.46281077664203	0.99986600508331	1.03833619858703	0.518089808495565	1
Merged-chr10-12922695-4	chr10	12922606	12922806	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_038027, exon 1 of 4)	non-coding (NR_038027, exon 1 of 4)	421.0	NR_038027	320273.0	Mm.417706	NR_038027	ENSMUSG00000097378	B230208H11Rik	-	RIKEN cDNA B230208H11 gene	ncRNA	5.63533017829627	5.8966673145636	4.67139885083824	6.07587994594625	5.50974400066021	5.54721144313592	4.42085032038819	6.18114978147473	-0.128276085334781	0.728547797032414	0.998431161219273
Merged-chr14-102906451-4	chr14	102906345	102906545	+	928.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	76187.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-75837809-1	chr18	75837709	75837909	+	604.333313	f1_c57bl6.idr	intron (NM_145356, intron 1 of 4)	intron (NM_145356, intron 1 of 4)	17631.0	NM_145356	207259.0	Mm.159332	NM_145356	ENSMUSG00000044646	Zbtb7c	B230208J24Rik|Kr-pok|Zbtb36	zinc finger and BTB domain containing 7C	protein-coding	2.27293528724158	1.50711045568887	2.1915403215941	2.31503966124339	2.12960294391099	1.26659091312526	1.83122983101725	1.913431539781	-0.770844483021989	0.444330470218687	0.912265842646861
Merged-chr11-43412948-4	chr11	43412854	43413054	+	929.5750119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13027.0	NM_013917	30939.0	Mm.6856	NM_013917	ENSMUSG00000020415	Pttg1	AW555095|C87862|Pttg|Pttg3	pituitary tumor-transforming gene 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-78455605-3	chr10	78455495	78455695	+	776.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172134, intron 1 of 10)	intron (NM_172134, intron 1 of 10)	9353.0	NM_172134	216134.0	Mm.206159	NM_172134	ENSMUSG00000032788	Pdxk	2310036D04Rik|AA119688|C77999	pyridoxal (pyridoxine, vitamin B6) kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-13271442-4	chr2	13271345	13271545	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009105)	promoter-TSS (NM_009105)	-30.0	NM_009105	20163.0	Mm.905	NM_009105	ENSMUSG00000026727	Rsu1	RsuI|rsp-1	Ras suppressor protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-21945263-4	chr13	21945166	21945366	+	971.4833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360886, intron 1 of 5)	CpG	166.0	NM_001360886	193452.0	Mm.187446	NM_183014	ENSMUSG00000006720	Zfp184	4930500C15Rik	zinc finger protein 184 (Kruppel-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-11475895-4	chr8	11475804	11476004	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011227, intron 1 of 1)	intron (NM_011227, intron 1 of 1)	-2025.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-145244443-4	chr6	145244348	145244548	+	992.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021284, intron 2 of 4)	intron (NM_021284, intron 2 of 4)	5783.0	NM_021284	16653.0	Mm.383182	NM_021284	ENSMUSG00000030265	Kras	AI929937|K-Ras|K-Ras 2|K-ras|Ki-ras|Kras-2|Kras2|c-K-ras|c-Ki-ras|p21B|ras	Kirsten rat sarcoma viral oncogene homolog	protein-coding	-0.48178564407994	-0.46553427080164	-0.47080969125446	-0.474911888593487	-0.167621479431676	-0.464351459288011	0.570252535063313	-0.474193195492008	3.82657466919102	0.133395261265913	1
Merged-chr13-44483633-3	chr13	44483541	44483741	+	867.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	43914.0	NR_045489	69491.0	Mm.392410	NR_045489	ENSMUSG00000098144	1700029N11Rik	-	RIKEN cDNA 1700029N11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-180259439-2	chr2	180259339	180259539	+	625.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_025587)	TTS (NM_025587)	1903.0	NR_037274	100526556.0		NR_037274	ENSMUSG00000092827	Mir3091	mir-3091|mmu-mir-3091	microRNA 3091	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139344713-2	chr5	139344613	139344813	+	900.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_197980, intron 1 of 2)	intron (NM_197980, intron 1 of 2)	453.0	NM_197980	68033.0	Mm.261064	NM_197980	ENSMUSG00000045438	Cox19	1810074D02Rik|2810437L13Rik	cytochrome c oxidase assembly protein 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129640200-3	chr4	129640059	129640259	+	830.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005506, intron 1 of 9)	intron (NM_001005506, intron 1 of 9)	646.0	NM_001005506	109658.0	Mm.268863	NM_001005506	ENSMUSG00000053841	Txlna	2600010N21Rik|AI425952|AW209241|Il14|Txln	taxilin alpha	protein-coding	0.661874569971615	0.31811127619943	0.311863519452284	0.465468387474151	0.852816202953267	0.319520958471134	0.872644124736528	0.6051982460097	1.57870012690727	0.382228906141409	1
Merged-chr18-44382394-1	chr18	44382294	44382494	+	542.0	f1_c57bl6.idr	intron (NM_027490, intron 1 of 10)	B3|SINE|B2	1894.0	NM_027490	70640.0	Mm.87629	NM_027490	ENSMUSG00000024472	Dcp2	2410015D23Rik|5730537H01Rik|AL118268	decapping mRNA 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141874349-4	chr4	141874250	141874450	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025994, intron 1 of 3)	intron (NM_025994, intron 1 of 3)	570.0	NM_025994	27984.0	Mm.395598	NM_025994	ENSMUSG00000040659	Efhd2	2600015J22Rik|AA408606|D4Wsu27e	EF hand domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-57230412-4	chr12	57230314	57230514	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001037746)	promoter-TSS (NM_001037746)	2.0	NM_001037746	328099.0	Mm.268180	NM_001037746	ENSMUSG00000079104	Prps1l3	AU021838|AW536152|Gm5081	phosphoribosyl pyrophosphate synthetase 1-like 3	protein-coding	6.65328520254388	6.86575230809064	6.68079549407767	6.64173006285185	6.41404682567082	6.77924897775433	6.4092186694413	6.84018317157898	-0.0948457549667671	0.621499209793281	0.979537295922371
Merged-chr12-55414904-2	chr12	55414804	55415004	+	588.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310583, intron 6 of 6)	(CAAAA)n|Simple_repeat|Simple_repeat	16079.0	NM_011968	26443.0	Mm.30210	NM_011968	ENSMUSG00000021024	Psma6	IOTA	proteasome (prosome, macropain) subunit, alpha type 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-149375310-4	chr6	149375217	149375417	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33667.0	NM_001112796	12121.0	Mm.177181	NM_009753	ENSMUSG00000003452	Bicd1	B830009D06Rik|bic-D 1	BICD cargo adaptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-82740396-3	chr6	82740314	82740514	+	921.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013820, intron 7 of 17)	intron (NM_013820, intron 7 of 17)	34040.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	2.48181874587061	3.29536349699418	2.81247280032186	3.0174911744378	3.54927296085352	2.93279808702916	1.8608014909368	2.50720473200376	-0.102623700608647	0.8901873793545	0.998431161219273
Merged-chr10-20696768-1	chr10	20696668	20696868	+	732.0	f0_balb.idr	intron (NM_013875, intron 1 of 12)	intron (NM_013875, intron 1 of 12)	28310.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-17183045-2	chr16	17182945	17183145	+	966.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009456, intron 1 of 3)	MT2A|LTR|ERVL	18447.0	NM_009456	22195.0	Mm.3074	NM_009456	ENSMUSG00000038965	Ube2l3	C79827|UbcM4|Ubce7	ubiquitin-conjugating enzyme E2L 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-36633780-4	chr16	36633683	36633883	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019388, intron 1 of 7)	intron (NM_019388, intron 1 of 7)	32294.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-59130850-2	chr12	59130750	59130950	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001165253)	promoter-TSS (NM_001165253)	-603.0	NM_001165253	338320.0	Mm.213215	NM_146034	ENSMUSG00000021000	Mia2	Ctage5|D12Bwg0579e|Mea6|Mgea|Mgea6	melanoma inhibitory activity 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166606057-2	chr2	166606010	166606210	+	686.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 10 of 39)	MER102b|DNA|hAT-Charlie	41588.0	NR_152154	433503.0	Mm.491336	NR_152154		Gm29679	-	predicted gene, 29679	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-57883357-2	chr16	57883257	57883457	+	606.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-128620.0	NM_007739	12837.0	Mm.130388	NM_007739	ENSMUSG00000068196	Col8a1	Col8a-1	collagen, type VIII, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-73814238-2	chr13	73814138	73814338	+	972.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360694, intron 24 of 24)	intron (NM_001360694, intron 24 of 24)	33393.0	NM_028186	72293.0	Mm.45506	NM_028186	ENSMUSG00000021567	Nkd2	2210403L10Rik|AW212591|mNkd2	naked cuticle 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-145803054-4	chr6	145802952	145803152	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5331.0	NM_027760	71323.0	Mm.158669	NM_027760	ENSMUSG00000030259	Rassf8	5133400D11Rik|AA815821|AW123240|Hoj1|mHoj-1	Ras association (RalGDS/AF-6) domain family (N-terminal) member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100454911-2	chr7	100454811	100455011	+	624.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001017985, exon 31 of 33)	exon (NM_001017985, exon 31 of 33)	-18080.0	NM_009464	22229.0	Mm.6254	NM_009464	ENSMUSG00000032942	Ucp3	AI645527|Slc25a9|UCP-3	uncoupling protein 3 (mitochondrial, proton carrier)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99483745-4	chr7	99483642	99483842	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_012052)	promoter-TSS (NM_012052)	-33.0	NM_012052	27050.0	Mm.236868	NM_012052	ENSMUSG00000030744	Rps3	D7Ertd795e|Rs_3	ribosomal protein S3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-74241048-1	chr1	74240948	74241148	+	1000.0	f0_balb.idr	intron (NM_001357387, intron 2 of 10)	intron (NM_001357387, intron 2 of 10)	4531.0	NM_029711	76709.0	Mm.337038	NM_029711	ENSMUSG00000006304	Arpc2	2210023N03Rik|34kDa|p34-Arc	actin related protein 2/3 complex, subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-135699750-2	chr3	135699682	135699882	+	825.75	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-8235.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-59848273-3	chr13	59848167	59848367	+	743.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MERVL_2A-int|LTR|ERVL	-25120.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	1.68162467956033	1.30524793067871	1.75026646734331	1.59735156090642	1.30832042107335	1.31466584088136	0.889871949344035	0.877425793747381	-1.95598444808977	0.13222676959714	0.569166508595966
Merged-chr5-31082561-2	chr5	31082437	31082637	+	722.291626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10990.0	NM_011773	22784.0	Mm.1396	NM_011773	ENSMUSG00000029151	Slc30a3	Znt3	solute carrier family 30 (zinc transporter), member 3	protein-coding	3.7872469394566	3.74183666474726	3.54751494887687	3.65151197038879	3.81661313613024	1.76459058928865	2.75388362164207	2.91772191018059	-1.01628256944961	0.118563598484521	0.540199767576184
Merged-chr19-40589445-4	chr19	40589332	40589532	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019698)	promoter-TSS (NM_019698)	-969.0	NM_153554	56454.0	Mm.233117	NM_019698	ENSMUSG00000025007	Aldh18a1	2810433K04Rik|AI429789|Pycs	aldehyde dehydrogenase 18 family, member A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-172095587-3	chr1	172095472	172095672	+	729.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009938, intron 6 of 32)	intron (NM_009938, intron 6 of 32)	-12823.0	NM_021607	59287.0	Mm.218203	NM_021607	ENSMUSG00000003458	Ncstn	9430068N19Rik|AA727311|Aph2|D1Dau13e|Kiaa0253|Nct|mKIAA0253	nicastrin	protein-coding	0.528451499977508	0.894257711311143	0.96294130940491	0.395920632950462	0.532907465629928	0.765552821201068	0.402869020911075	0.822657067896463	-0.461978832311089	0.780533406792146	1
Merged-chr17-55879036-4	chr17	55878956	55879156	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144546)	promoter-TSS (NM_144546)	-103.0	NM_144546	104349.0	Mm.460659	NM_144546	ENSMUSG00000057835	Zfp119a	AL024077|Mzf13|Zfp119	zinc finger protein 119a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-94269179-1	chr1	94269079	94269279	+	704.0	f1_balb.idr	Intergenic	Intergenic	-216626.0	NM_008798	18566.0	Mm.5024	NM_008798	ENSMUSG00000026285	Pdcd1	Ly101|PD-1|Pdc1	programmed cell death 1	protein-coding	-1.07637186174354	-0.710584347346669	-1.20769886504504	-1.21655996976359	-1.22292325303089	-1.19457377095274	-1.20525683050782	-1.21497383625558	-2.53931642760192	0.437326703338958	1
Merged-chr14-14345713-4	chr14	14345602	14345802	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008369)	promoter-TSS (NM_008369)	-793.0	NM_008369	16188.0	Mm.425857	NM_008369	ENSMUSG00000068758	Il3ra	CD123|CDw123|SUT-1	interleukin 3 receptor, alpha chain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-75774746-2	chr10	75774646	75774846	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_133994, exon 5 of 5)	3' UTR (NM_133994, exon 5 of 5)	-1372.0	NM_010027	13202.0	Mm.298947	NM_010027	ENSMUSG00000001666	Ddt	C78655	D-dopachrome tautomerase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-100495293-4	chr15	100495197	100495397	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153407)	promoter-TSS (NM_153407)	-58.0	NM_153407	207785.0	Mm.294969	NM_153407	ENSMUSG00000044636	Csrnp2	CSRNP-2|Csnrp2|taip-12	cysteine-serine-rich nuclear protein 2	protein-coding	2.62510957279641	2.05788709739123	1.99036156443334	1.93607367111344	2.8386518469029	1.39967444598824	2.29152375905912	2.70474870684457	0.53959876244131	0.556147851219076	0.960313897742752
Merged-chr14-8213197-2	chr14	8213097	8213297	+	618.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027782)	promoter-TSS (NM_027782)	-884.0	NM_027782	71393.0	Mm.292712	NM_027782	ENSMUSG00000021752	Kctd6	5430433B02Rik|AU044285	potassium channel tetramerisation domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-67369809-4	chr18	67369707	67369907	+	983.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20924.0	NM_026473	67951.0	Mm.181860	NM_026473	ENSMUSG00000001473	Tubb6	2310057H16Rik|BB220206	tubulin, beta 6 class V	protein-coding	1.35832499444449	3.14152346500719	2.0296525093415	1.96824834642709	2.31674914367084	2.61831142753792	1.48004580694833	1.43592917552417	-0.521738161111527	0.603131808376553	0.973565005745828
Merged-chr17-64722208-2	chr17	64722108	64722308	+	767.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008549, intron 16 of 21)	intron (NM_008549, intron 16 of 21)	-44903.0	NR_105051	101202683.0	Mm.393309	NR_105051		Dreh	-	down-regulated in hepatocellular carcinoma	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-12814431-2	chr19	12814331	12814531	+	595.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134152, intron 3 of 8)	Lx2B|LINE|L1	15852.0	NM_134152	107321.0	Mm.313136	NM_134152	ENSMUSG00000024696	Lpxn	4933402K05Rik|A530083L21Rik|AV278559|LDPL	leupaxin	protein-coding	-1.84354474832578	-1.81325489144778	-1.53416061964661	-1.82993901100912	-1.8414184563789	-1.81126990231468	-1.82034119297928	-1.82859217979378	-1.52252619601533	0.665276690233728	1
Merged-chr2-31165159-4	chr2	31165066	31165266	+	711.299988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178760, intron 1 of 17)	L1MEd|LINE|L1	12850.0	NM_178760	277463.0	Mm.236074	NM_178760	ENSMUSG00000000194	Gpr107	9930033D15Rik|AI790205|C530034M11|mKIAA1624	G protein-coupled receptor 107	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-37460615-2	chr9	37460515	37460715	+	592.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-27440.0	NM_001164767	19649.0	Mm.212826	NM_011248	ENSMUSG00000032128	Robo3	Rbig1|Rig-1|Rig1|Robo3a|Robo3b	roundabout guidance receptor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153170631-4	chr2	153170528	153170728	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133847, intron 1 of 17)	L1ME1|LINE|L1	9327.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85824741-4	chr12	85824680	85824880	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081423)	promoter-TSS (NM_001081423)	113.0	NM_001360451	58520.0	Mm.143795	NM_021446	ENSMUSG00000021252	Erg28	0610007P14Rik|1190004E09Rik|AU019315|C77855|ORF11	ergosterol biosynthesis 28	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-73056308-4	chr2	73056190	73056390	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-75844.0	NM_001018042	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-22130663-4	chr9	22130579	22130779	+	986.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007388)	promoter-TSS (NM_007388)	-81.0	NM_007388	11433.0	Mm.46354	NM_007388	ENSMUSG00000001348	Acp5	TRACP|TRAP	acid phosphatase 5, tartrate resistant	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-108737393-3	chr8	108737312	108737512	+	661.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007496, intron 1 of 9)	intron (NM_007496, intron 1 of 9)	22768.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	1.28978314631708	1.75859224960567	2.2724716082997	0.962111405423944	1.29986384621416	1.00110049965321	1.94342795321164	1.77071285219327	-0.360402869951179	0.770028052698884	0.998431161219273
Merged-chr3-103737054-1	chr3	103736954	103737154	+	650.0	f1_balb.idr	exon (NM_133859, exon 2 of 3)	exon (NM_133859, exon 2 of 3)	947.0	NM_133859	99543.0	Mm.211535	NM_133859	ENSMUSG00000027848	Olfml3	2810002E22Rik|AI115209|AW550633|HNOEL-iso|ONT3|mONT3	olfactomedin-like 3	protein-coding	-1.31349849087795	-1.28274354783242	-1.29349452597086	-1.3023256995151	-1.3130151546297	-1.28041376602105	-0.694015972326031	-1.30074492367298	2.57396649482007	0.456321314346772	1
Merged-chr10-57438207-1	chr10	57438107	57438307	+	1000.0	f1_balb.idr	Intergenic	L1VL4|LINE|L1	48146.0	NR_045353	74928.0	Mm.416643	NR_045353	ENSMUSG00000097370	4930467K11Rik	-	RIKEN cDNA 4930467K11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-80062324-4	chr17	80062218	80062418	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144802)	promoter-TSS (NM_144802)	-50.0	NM_144802	72692.0	Mm.64579	NM_144802	ENSMUSG00000024095	Hnrnpll	2510028H02Rik|2810036L13Rik|AI256697|AI852082|Hnrpll	heterogeneous nuclear ribonucleoprotein L-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123145962-2	chr5	123145862	123146062	+	641.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001040398, intron 4 of 16)	intron (NM_001040398, intron 4 of 16)	3769.0	NM_001040398	208043.0	Mm.250391	NM_177581	ENSMUSG00000038384	Setd1b	AA516740|BC035291|KMT2G|mKIAA1076	SET domain containing 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-34801220-2	chr2	34801120	34801320	+	715.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	-1308.0	NM_145522	227746.0	Mm.158705	NM_145522	ENSMUSG00000070953	Rabepk	8430412M01Rik|9530020D24Rik|AV073337|C87311|Rab9p40	Rab9 effector protein with kelch motifs	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-47415637-2	chr2	47415537	47415737	+	606.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	-1398472.0	NM_007396	11480.0	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97625544-1	chr11	97625444	97625644	+	551.0	f1_c57bl6.idr	Intergenic	Intergenic	4172.0	NM_175332	103551.0	Mm.24506	NM_175332	ENSMUSG00000043439	Epop	AA409164|AI413509|AW539173|E13|E130012A19Rik|esPRC2p48	elongin BC and polycomb repressive complex 2 associated protein	protein-coding	1.46648701822142	1.64194984595941	1.17410943366047	1.73241986133069	1.37201383543879	1.37907048792699	1.18019320018178	1.43514518198857	-0.718464340269013	0.535206609435546	0.95286627222167
Merged-chr8-83602862-2	chr8	83602762	83602962	+	979.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5313.0	NM_018808	81489.0	Mm.282092	NM_018808	ENSMUSG00000005483	Dnajb1	0610007I11Rik|DjB1|HSPF1|Hdj1|Hsp40	DnaJ heat shock protein family (Hsp40) member B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-123264045-4	chr10	123263948	123264148	+	775.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_182807)	promoter-TSS (NM_182807)	-28.0	NR_153334	268354.0	Mm.51939	NM_182807	ENSMUSG00000044071	Fam19a2	6330575M02|FAM19A2 TAFA-2|Sam2|TAFA2|Tafa-2	family with sequence similarity 19, member A2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-99182346-4	chr10	99182250	99182450	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153333, intron 11 of 12)	intron (NR_153333, intron 11 of 12)	74215.0	NM_015737	14426.0	Mm.314	NM_015737	ENSMUSG00000090035	Galnt4	AV011803	polypeptide N-acetylgalactosaminyltransferase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-73617783-4	chr15	73617663	73617863	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357747)	promoter-TSS (NM_001357747)	-439.0	NM_001357747	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118658852-4	chr9	118658739	118658939	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 6 of 27)	intron (NM_133721, intron 6 of 27)	52130.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-160716015-2	chr2	160715915	160716115	+	603.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009408, intron 17 of 20)	intron (NM_009408, intron 17 of 20)	-15295.0	NM_021280	18803.0	Mm.44463	NM_021280	ENSMUSG00000016933	Plcg1	AI894140|Cded|Plc-1|Plc-gamma1|Plcg-1	phospholipase C, gamma 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-97775026-4	chr3	97774917	97775117	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039376, intron 8 of 46)	intron (NM_001039376, intron 8 of 46)	-7003.0	NR_110360	83679.0	Mm.129840	NM_031401	ENSMUSG00000038170	Pde4dip	4732458A06Rik|9430063L05Rik|C87016|D130016K21Rik|D3Bwg1078e|Usmg4|mKIAA0454	phosphodiesterase 4D interacting protein (myomegalin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123997276-2	chr5	123997176	123997376	+	627.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_105999)	TTS (NR_105999)	424.0	NR_105999	102465625.0		NR_105999	ENSMUSG00000098454	Mir7032	Gm27309|mmu-mir-7032	microRNA 7032	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-62137540-2	chr15	62137440	62137640	+	554.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_132746, intron 2 of 6)	intron (NR_132746, intron 2 of 6)	81911.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-120566416-2	chr9	120566316	120566516	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_178676, exon 11 of 11)	exon (NM_178676, exon 11 of 11)	-5101.0	NM_025974	67115.0	Mm.289810	NM_025974	ENSMUSG00000025794	Rpl14	3100001N19Rik|AA407502|AL022816|CAG-ISL-7|CTG-B33|L14	ribosomal protein L14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-121334743-4	chr10	121334675	121334875	+	969.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361015, intron 2 of 12)	intron (NM_001361015, intron 2 of 12)	16869.0	NM_001361015	74694.0	Mm.233833	NM_029057	ENSMUSG00000052302	Tbc1d30	4930505D03Rik|9530013E20Rik	TBC1 domain family, member 30	protein-coding	0.403659842609444	1.08775694204259	0.614298115991255	0.415059254982786	0.565958832644548	1.09969062337377	1.15402949172768	0.416252454405839	0.972450907756484	0.570996937068659	1
Merged-chr4-19580812-3	chr4	19580680	19580880	+	860.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025476, intron 2 of 9)	B4A|SINE|B4	5714.0	NM_025476	66302.0	Mm.440686	NM_025476	ENSMUSG00000028229	Rmdn1	Fam82b|RMD-1	regulator of microtubule dynamics 1	protein-coding	2.39631625030463	3.20709346283139	1.75148905689063	3.28993170035011	2.41727627159725	2.84336238930489	1.76524251051294	3.30641080462482	-0.182707196168251	0.824895675538935	0.998431161219273
Merged-chr13-60675424-2	chr13	60675328	60675528	+	719.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	73217.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	-0.245657862113973	0.220838526607763	-0.374372086460688	-0.377298463425362	-0.121311660350988	-0.180390831453314	-0.373533965993272	-0.376787842937668	-0.925924687966311	0.697312543985387	1
Merged-chr13-60468417-2	chr13	60468317	60468517	+	910.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-133530.0	NM_001285917	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-4447489-3	chr2	4447379	4447579	+	774.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 2 of 23)	intron (NM_001177843, intron 2 of 23)	46503.0	NM_001177843	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84920021-1	chr8	84919921	84920121	+	594.0	f1_balb.idr	intron (NM_019945, intron 17 of 25)	ID_B1|SINE|B4	6686.0	NR_103491	100503676.0	Mm.437155	NR_103491	ENSMUSG00000003812	Gm38426	-	predicted gene, 38426	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76228906-1	chr15	76228806	76229006	+	560.0	f1_balb.idr	intron (NM_001163542, intron 1 of 33)	intron (NM_001163542, intron 1 of 33)	591.0	NM_201385	18810.0	Mm.234912	NM_011117	ENSMUSG00000022565	Plec	AA591047|AU042537|EBS1|PCN|PLTN|Plec1	plectin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-3891059-4	chr18	3890954	3891154	+	995.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-274778.0	NM_026092	67328.0	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-13549054-2	chr17	13548954	13549154	+	585.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045437, intron 1 of 3)	MTC|LTR|ERVL-MaLR	5040.0	NR_045436	72578.0	Mm.46549	NR_045436	ENSMUSG00000038347	2700054A10Rik	-	RIKEN cDNA 2700054A10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-116996393-3	chr10	116996303	116996503	+	657.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001007583, intron 4 of 9)	intron (NM_001007583, intron 4 of 9)	10089.0	NM_001007583	382427.0	Mm.339322	NM_001007583	ENSMUSG00000020169	Best3	Vmd2l3|mBest4	bestrophin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-62112408-1	chr18	62112308	62112508	+	623.0	f1_balb.idr	Intergenic	Intergenic	67573.0	NM_007420	11555.0	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	-0.393695853632059	-0.751181653761304	-0.754251884853322	-0.756614066174729	-0.20124806483922	-0.750488270562737	-0.753575544849141	-0.756201818088136	0.759966263124917	0.800583933387673	1
Merged-chr15-76705042-2	chr15	76704942	76705142	+	587.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_027122)	TTS (NM_027122)	3500.0	NM_027122	69572.0	Mm.34920	NM_027122	ENSMUSG00000019080	Mfsd3	2310010G13Rik	major facilitator superfamily domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-8644158-4	chr13	8644056	8644256	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110345, intron 3 of 10)	ORR1E|LTR|ERVL-MaLR	226888.0	NM_001039389	207615.0	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-38558997-2	chr5	38558897	38559097	+	607.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_011715, intron 2 of 14)	(TG)n|Simple_repeat|Simple_repeat	2598.0	NM_011715	22388.0	Mm.2654	NM_011715	ENSMUSG00000005103	Wdr1	Aip1|D5Wsu185e|rede	WD repeat domain 1	protein-coding	1.48876020808724	2.9054632473702	1.14748834790107	2.02386587067285	1.92873463790524	2.62202879268456	1.15409722122556	2.03521587945548	-0.119637271026563	0.913785228530364	0.998431161219273
Merged-chr15-30607587-2	chr15	30607487	30607687	+	649.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355502, intron 3 of 21)	intron (NM_001355502, intron 3 of 21)	-431539.0	NR_045186	73784.0	Mm.66947	NR_045186	ENSMUSG00000115474	4930430F21Rik	-	RIKEN cDNA 4930430F21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-56742170-4	chr19	56742016	56742216	+	906.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19744.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-94380829-2	chr13	94380729	94380929	+	632.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009680, intron 1 of 26)	B1F2|SINE|Alu	21869.0	NM_009680	11774.0	Mm.21185	NM_009680	ENSMUSG00000021686	Ap3b1	AP-3|AU015684|C78395|Hps2|beta3A|pe|pearl|rim2	adaptor-related protein complex 3, beta 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-132551936-4	chr7	132551851	132552051	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24447.0	NM_016978	18242.0	Mm.13694	NM_016978	ENSMUSG00000030934	Oat	AI194874|rhg	ornithine aminotransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-137388553-4	chr4	137388445	137388645	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	21246.0	NM_001126318	242711.0	Mm.475541	NM_001126318	ENSMUSG00000078520	Cela3a	Gm13011	chymotrypsin-like elastase family, member 3A	protein-coding	0.209159415253027	1.22534676971923	0.226474774305574	0.220011491199424	0.642196639754113	0.790667108507951	0.431708104453853	0.221144495930403	-0.186044685362198	0.922364492030513	1
Merged-chr6-34956459-4	chr6	34956352	34956552	+	965.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025573, intron 4 of 7)	intron (NM_001025573, intron 4 of 7)	21547.0	NM_001025573	243753.0	Mm.440221	NM_001025573	ENSMUSG00000029847	Slc23a4	2010107G12Rik|Gm468	solute carrier family 23 member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-54781912-4	chr14	54781826	54782026	+	998.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016972)	promoter-TSS (NM_016972)	-40.0	NM_016972	50934.0	Mm.276831	NM_016972	ENSMUSG00000022180	Slc7a8	AA408822|LAT2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-107471532-3	chr11	107471483	107471683	+	662.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145823)	promoter-TSS (NM_145823)	-863.0	NM_145823	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-35225205-4	chr4	35225098	35225298	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081343, intron 1 of 10)	intron (NM_001081343, intron 1 of 10)	682.0	NM_001081343	73205.0	Mm.331544	NM_001081343	ENSMUSG00000028300	3110043O21Rik	AI840585|C9orf72	RIKEN cDNA 3110043O21 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171390312-4	chr1	171390172	171390372	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005508, intron 1 of 11)	intron (NM_001005508, intron 1 of 11)	1312.0	NM_001005508	226652.0	Mm.251048	NM_001005508	ENSMUSG00000048865	Arhgap30	6030405P05Rik|Gm102|mFLJ00267	Rho GTPase activating protein 30	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-61451071-4	chr8	61450987	61451187	+	993.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36647.0	NM_145595	234309.0	Mm.29059	NM_145595	ENSMUSG00000031641	Cbr4	A730083J17Rik|BC009118	carbonyl reductase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-125055472-4	chr4	125055353	125055553	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_145552)	TTS (NM_145552)	10204.0	NM_175223	75563.0	Mm.50304	NM_175223	ENSMUSG00000042707	Dnali1	1700023A09Rik|AW049135	dynein, axonemal, light intermediate polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-4376377-4	chr9	4376276	4376476	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145609)	promoter-TSS (NM_145609)	-176.0	NM_145609	78100.0	Mm.206549	NM_145609	ENSMUSG00000041124	Msantd4	8430410K20Rik|Mysantd4	Myb/SANT-like DNA-binding domain containing 4 with coiled-coils	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-21286841-3	chr12	21286727	21286927	+	916.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008403)	promoter-TSS (NM_008403)	530.0	NM_018813	54451.0	Mm.356778	NM_018813	ENSMUSG00000054309	Cpsf3	-	cleavage and polyadenylation specificity factor 3	protein-coding	3.2838845025792	1.88334878965721	2.66267701251458	2.5867966384684	3.50659214487714	2.32681764646067	2.9040273506905	2.71253034465548	0.430764117166124	0.569804281360154	0.962718661854691
Merged-chr6-137455774-3	chr6	137455663	137455863	+	905.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011216, intron 25 of 26)	intron (NM_011216, intron 25 of 26)	45042.0	NM_001164403	19277.0	Mm.186361	NM_011216	ENSMUSG00000030223	Ptpro	D28|GLEPP1|PTPBK|PTPROt|PTPU2|PTPoc|PTPphi|Ptpn15|R-PTP-O	protein tyrosine phosphatase, receptor type, O	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-63989448-4	chr9	63989367	63989567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008542, intron 3 of 3)	intron (NM_008542, intron 3 of 3)	32592.0	NM_008542	17130.0	Mm.325757	NM_008542	ENSMUSG00000036867	Smad6	Madh6|b2b390Clo	SMAD family member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-65614706-2	chr17	65614606	65614806	+	560.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1151.0	NM_013933	30960.0	Mm.266767	NM_013933	ENSMUSG00000024091	Vapa	33kDa|VAP33	vesicle-associated membrane protein, associated protein A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-36797513-2	chr5	36797466	36797666	+	566.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026242)	promoter-TSS (NM_026242)	-812.0	NM_026242	67568.0	Mm.332336	NM_026242	ENSMUSG00000055302	Mrfap1	9130413I22Rik|AL022827|Pam14	Morf4 family associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-41674488-4	chr10	41674402	41674602	+	980.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358562, intron 8 of 47)	B4A|SINE|B4	41961.0	NM_001358562	75973.0	Mm.228517	NM_029493	ENSMUSG00000075225	Ccdc162	5033413D22Rik|Ccdc162p|Gm29096|Gm61|Gm6976	coiled-coil domain containing 162	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-148529048-2	chr2	148528948	148529148	+	635.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-85513.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	0.577546355647001	-0.264667876751608	-0.269326047772783	-0.10569591713303	-0.129165155055498	-0.263618171130279	-0.0845548944400172	-0.272293383615169	-2.0575882600593	0.371625689341479	1
Merged-chr1-191018077-1	chr1	191017977	191018177	+	540.0	f1_c57bl6.idr	intron (NM_001313747, intron 1 of 8)	intron (NM_001313747, intron 1 of 8)	-7274.0	NR_027298	100125339.0	Mm.472263	NR_027298	ENSMUSG00000097845	A230020J21Rik	-	RIKEN cDNA A230020J21 gene	ncRNA	0.224146448747553	1.03688187825253	0.241324833052794	0.928684528149621	0.22575703230069	0.251413316349407	0.243149490915175	0.937132552183834	-1.12203025381979	0.580795890226342	1
Merged-chr9-65598950-4	chr9	65598861	65599061	+	896.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11801.0	NM_001357527	208084.0	Mm.211032	NM_172453	ENSMUSG00000041064	Pif1	4631410M14|AI449441	PIF1 5'-to-3' DNA helicase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4147328-4	chr19	4147235	4147435	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1328.0	NM_011778	23789.0	Mm.276859	NM_011778	ENSMUSG00000024835	Coro1b	-	coronin, actin binding protein 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-122301696-3	chr2	122301604	122301804	+	650.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_025777, exon 5 of 6)	exon (NM_025777, exon 5 of 6)	2804.0	NM_025777	66811.0	Mm.171333	NM_025777	ENSMUSG00000027225	Duoxa2	9030623N16Rik|Nip2	dual oxidase maturation factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-31891238-3	chr11	31891150	31891350	+	918.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290678, intron 2 of 7)	L1MD2|LINE|L1	20310.0	NM_026252	67579.0	Mm.339792	NM_026252	ENSMUSG00000020300	Cpeb4	Cpe-bp4|Cpeb-4|mCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding	1.77845286503098	0.71893808175853	1.46947548781405	0.889673635885747	1.24375777167373	1.13391647422471	0.709089759174684	0.893714984585348	-1.16374387155251	0.416395966169446	0.897120107712695
Merged-chr5-36810728-2	chr5	36810628	36810828	+	861.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008550, intron 15 of 18)	intron (NM_008550, intron 15 of 18)	-13974.0	NM_026242	67568.0	Mm.332336	NM_026242	ENSMUSG00000055302	Mrfap1	9130413I22Rik|AL022827|Pam14	Morf4 family associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-78783018-4	chr7	78782904	78783104	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026498)	promoter-TSS (NM_026498)	85.0	NM_023331	67308.0	Mm.193181	NM_023331	ENSMUSG00000030612	Mrpl46	3110052F15Rik|C15orf4|C80107|LIECG2|P2ECSL	mitochondrial ribosomal protein L46	protein-coding	4.19972115760812	3.6691132081161	4.09313504091125	3.67791575144494	3.29644953517312	3.50697746378437	3.28555534258192	3.89092940511729	-0.611646131592368	0.218475793492253	0.709602753199798
Merged-chr19-6978477-3	chr19	6978381	6978581	+	840.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008020, intron 3 of 5)	intron (NM_008020, intron 3 of 5)	911.0	NM_001360288	14227.0	Mm.4234	NM_008020	ENSMUSG00000056629	Fkbp2	mFKBP13|mFKBP2	FK506 binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167623836-2	chr2	167623736	167623936	+	578.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023230, intron 1 of 3)	B1_Mur1|SINE|Alu	8169.0	NM_001311146	66589.0	Mm.278783	NM_023230	ENSMUSG00000078923	Ube2v1	0610011J09Rik|AI256840|CROC-1|CROC1|D7Bwg1382e|UEV-1	ubiquitin-conjugating enzyme E2 variant 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-17858850-2	chr5	17858750	17858950	+	727.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159558, intron 1 of 15)	RMER1B|Other|Other	-9058.0	NM_001159556	12491.0	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 molecule	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-54643697-1	chr14	54643597	54643797	+	586.0	f1_c57bl6.idr	promoter-TSS (NR_105913)	promoter-TSS (NR_105913)	-587.0	NR_105913	102466771.0		NR_105913	ENSMUSG00000106169	Mir6948	mmu-mir-6948	microRNA 6948	ncRNA	-1.50561175621786	-1.47331375025452	-1.02203377115094	-1.49110398925286	-1.50334449591826	-1.47119716082604	-1.48086985756939	-1.48966786617048	-2.07776723614574	0.550394407909386	1
Merged-chr15-50697919-4	chr15	50697808	50698008	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310481, intron 4 of 5)	intron (NM_001310481, intron 4 of 5)	191141.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98793012-2	chr11	98792912	98793112	+	656.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2504.0	NM_001361931	74026.0	Mm.258352	NM_028722	ENSMUSG00000052915	Msl1	2810017F12Rik|4121402D02Rik|4930463F05Rik|AA682082|Msl-1	male specific lethal 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-43671895-4	chr7	43671788	43671988	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145582)	promoter-TSS (NM_145582)	-143.0	NM_145582	233189.0	Mm.26514	NM_145582	ENSMUSG00000038888	Ctu1	Atpbd3|BC005752	cytosolic thiouridylase subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-63132280-3	chr9	63132187	63132387	+	927.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14693.0	NM_172446	207667.0	Mm.36349	NM_172446	ENSMUSG00000022245	Skor1	AV273001|C230094B15Rik|Corl1|Lbxcor1	SKI family transcriptional corepressor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-28616814-4	chr13	28616726	28616926	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045054, intron 5 of 7)	intron (NR_045054, intron 5 of 7)	94047.0	NR_105787	102466635.0		NR_105787	ENSMUSG00000099158	Mir6368	Gm27800|mmu-mir-6368	microRNA 6368	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101298170-4	chr15	101298065	101298265	+	939.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_033803)	TTS (NR_033803)	4953.0	NR_033803	77717.0	Mm.391998	NR_033803	ENSMUSG00000075408	6030408B16Rik	AI225877	RIKEN cDNA 6030408B16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80198436-4	chr7	80198346	80198546	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360135)	promoter-TSS (NM_001360135)	5.0	NM_001360135	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-51063501-4	chr14	51063388	51063588	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6246.0	NM_001011875	497106.0	Mm.379740	NM_001011875	ENSMUSG00000068407	Rnase12	Rai1	ribonuclease, RNase A family, 12 (non-active)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180958506-1	chr1	180958406	180958606	+	541.0	f1_balb.idr	intron (NM_144794, intron 9 of 22)	intron (NM_144794, intron 9 of 22)	15988.0	NM_144794	208795.0	Mm.185518	NM_144794	ENSMUSG00000026519	Tmem63a	BC014795|Tmem64a	transmembrane protein 63a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80123852-3	chr7	80123739	80123939	+	799.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8489.0	NM_173011	269951.0	Mm.246432	NM_173011	ENSMUSG00000030541	Idh2	E430004F23|IDPm|Idh-2	isocitrate dehydrogenase 2 (NADP+), mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-103511767-1	chr15	103511667	103511867	+	540.0	f1_c57bl6.idr	intron (NM_001357980, intron 1 of 14)	intron (NM_001357980, intron 1 of 14)	-3210.0	NM_001285890	18574.0	Mm.390792	NM_008800	ENSMUSG00000022489	Pde1b	Pde1b1	phosphodiesterase 1B, Ca2+-calmodulin dependent	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-80612103-3	chr18	80612051	80612251	+	960.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198429, intron 9 of 9)	intron (NM_198429, intron 9 of 9)	-67605.0	NR_028424	100039348.0	Mm.254722	NR_028424		Gm2176	A430076E10Rik	glucosamine-6-phosphate deaminase 1 pseudogene	pseudo	-1.06997269762433	-1.30473905204845	-1.3145270772132	-1.32256725251374	-1.06385251204029	-1.30261794616352	-1.3123112828633	-1.32112806497905	0.0394047164033882	0.991001358494878	1
Merged-chr8-123005245-3	chr8	123005149	123005349	+	944.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 1 of 12)	intron (NM_001081379, intron 1 of 12)	37035.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-33629089-1	chr17	33628989	33629189	+	1000.0	f0_c57.idr	promoter-TSS (NM_026712)	promoter-TSS (NM_026712)	-3.0	NR_034153	328801.0	Mm.181488	NM_026712	ENSMUSG00000073423	Zfp414	0610030H11Rik|Znf414	zinc finger protein 414	protein-coding	5.94976170563144	5.92697644035497	4.82533677985332	5.12791424587192	4.92688788836216	6.11776931728127	5.54368361851868	5.96557332453585	0.179756334798359	0.596617538496951	0.971586575449917
Merged-chr12-111675290-4	chr12	111675169	111675369	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2836.0	NM_001099792	328162.0	Mm.425747	NM_177374	ENSMUSG00000060950	Trmt61a	6720458F09Rik|AI606093|Gcd14|Trm61	tRNA methyltransferase 61A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-34663250-2	chr12	34663147	34663347	+	635.0	f0_balb.idr|f1_balb.idr	intron (NM_001271386, intron 3 of 27)	L1_Mus4|LINE|L1	-134358.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	1.32919465441649	1.04276186835833	1.58825097976859	2.07385713280992	1.97688095882704	1.80175582359016	1.86008447287698	1.01090054167077	0.436734457969484	0.717061882041836	0.998431161219273
Merged-chr9-61389604-4	chr9	61389499	61389699	+	769.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083928, intron 4 of 19)	intron (NM_001083928, intron 4 of 19)	17233.0	NM_001083927	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-112941976-4	chr12	112941829	112942029	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316724, intron 1 of 4)	CpG	213.0	NM_025399	66174.0	Mm.7070	NM_025399	ENSMUSG00000002804	Nudt14	1110030M18Rik|UGPPase	nudix (nucleoside diphosphate linked moiety X)-type motif 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69666748-2	chr11	69666648	69666848	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291058)	promoter-TSS (NM_001291058)	-578.0	NR_110993	12514.0	Mm.15819	NM_009853	ENSMUSG00000018774	Cd68	Lamp4|Scard1|gp110	CD68 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-78425707-4	chr10	78425612	78425812	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007793)	promoter-TSS (NM_007793)	42.0	NM_007793	13014.0	Mm.6095	NM_007793	ENSMUSG00000005054	Cstb	AA960480|Stfb	cystatin B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-121652993-4	chr8	121652904	121653104	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG-14599	-1071.0	NM_080855	142682.0	Mm.103202	NM_080855	ENSMUSG00000061410	Zcchc14	AA792890|BDG29	zinc finger, CCHC domain containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-5012816-4	chr2	5012709	5012909	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001305259)	promoter-TSS (NM_001305259)	-18.0	NM_027290	70024.0	Mm.23828	NM_027290	ENSMUSG00000026669	Mcm10	2410041F14Rik|AU018508|C330019M07Rik|C79164	minichromosome maintenance 10 replication initiation factor	protein-coding	4.4125910668	4.46455109906229	4.52815648220317	4.66537619483493	4.87424269473912	4.02785473006453	3.89397744877846	3.51490232424003	-0.425127604184055	0.328757330706267	0.831319090967059
Merged-chr15-101978133-2	chr15	101978033	101978233	+	794.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23846.0	NM_212487	332131.0	Mm.325105	NM_212487	ENSMUSG00000050463	Krt78	2310030B04Rik|Kb40	keratin 78	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70842095-2	chr8	70842003	70842203	+	767.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_032397)	TTS (NM_032397)	-2383.0	NM_027560	70807.0	Mm.24215	NM_027560	ENSMUSG00000002910	Arrdc2	4632416I05Rik|Ilad1	arrestin domain containing 2	protein-coding	1.22502801918061	0.830450435242062	1.46054683018079	1.78599946386254	0.792258744161423	1.39612720772918	1.0267848142236	1.42270886035717	-0.749142053187546	0.581882061798128	0.966599221005409
Merged-chr11-84880320-4	chr11	84880215	84880415	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025414)	promoter-TSS (NM_025414)	-30.0	NM_001077636	70325.0	Mm.390414	NM_027388	ENSMUSG00000045140	Pigw	2610044A17Rik|Gwt1	phosphatidylinositol glycan anchor biosynthesis, class W	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91647784-4	chr16	91647692	91647892	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178880)	promoter-TSS (NM_178880)	-32.0	NM_019973	20658.0	Mm.46401	NM_019973	ENSMUSG00000022961	Son	2900011L12Rik|AA409051|AU067731|C81487|mKIAA1019|nrebp	Son DNA binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19629497-4	chr7	19629348	19629548	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009046)	promoter-TSS (NM_009046)	-10.0	NM_009046	19698.0	Mm.1741	NM_009046	ENSMUSG00000002983	Relb	shep	avian reticuloendotheliosis viral (v-rel) oncogene related B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-106498786-2	chr8	106498686	106498886	+	774.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F|LINE|L1	-12066.0	NM_007665	12560.0	Mm.4658	NM_007665	ENSMUSG00000061048	Cdh3	AI385538|Cadp|Cdhp|P-cadherin|Pcad	cadherin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-113379495-4	chr6	113379412	113379612	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170485, intron 1 of 3)	intron (NM_001170485, intron 1 of 3)	1399.0	NM_001170486	68089.0	Mm.289306	NM_026552	ENSMUSG00000079426	Arpc4	20kDa|5330419I20Rik|AI327076|p20-Arc	actin related protein 2/3 complex, subunit 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-74009651-1	chr12	74009551	74009751	+	549.0	f0_balb.idr	intron (NM_172804, intron 1 of 6)	intron (NM_172804, intron 1 of 6)	11890.0	NM_172804	238266.0	Mm.311393	NM_172804	ENSMUSG00000044912	Syt16	6430703N11|Strep14|Syt14l|syt14r	synaptotagmin XVI	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75564789-4	chr11	75564677	75564877	+	958.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199284, intron 9 of 13)	intron (NM_001199284, intron 9 of 13)	13348.0	NR_039553	100628624.0		NR_039553	ENSMUSG00000093100	Mir3971	mmu-mir-3971|mu-mir-3971	microRNA 3971	ncRNA	4.75553464854221	5.11531201416057	4.92323188665029	4.62926798438846	5.14852959606471	4.79233978280023	5.14390927153648	5.13700001410093	0.24703497228971	0.438136194101579	0.908612234382228
Merged-chr8-106893204-3	chr8	106893084	106893284	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011574)	promoter-TSS (NM_011574)	409.0	NM_145412	214987.0	Mm.490308	NM_145412	ENSMUSG00000046691	Chtf8	5830457O10Rik|Ctf8|Derpc	CTF8, chromosome transmission fidelity factor 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-12419486-4	chr2	12419388	12419588	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_149732)	promoter-TSS (NR_149732)	-28.0	NR_149731	66960.0	Mm.34059	NM_024185	ENSMUSG00000026767	Mindy3	1810041E18Rik|2310047O13Rik|5830410F13Rik|AI447827|AW111958|Fam188a	MINDY lysine 48 deubiquitinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-110004659-3	chr7	110004556	110004756	+	803.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_037959, intron 1 of 2)	MIR|SINE|MIR	1990.0	NR_037959	69781.0	Mm.440728	NR_037959	ENSMUSG00000101585	1600010M07Rik	-	RIKEN cDNA 1600010M07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-121949001-2	chr8	121948901	121949101	+	728.583374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1491.0	NM_016812	53325.0	Mm.287163	NM_016812	ENSMUSG00000025316	Banp	AA408158|SMAR1	BTG3 associated nuclear protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-90272738-4	chr9	90272652	90272852	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1983.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	7.18254989908369	7.57874574525612	7.35523187899228	7.25307076546849	6.53571112200933	6.25760267026297	6.61111719708955	6.87905500806022	-0.795745590967819	1.41634325541085e-05	0.000617189577908692
Merged-chr13-21711511-2	chr13	21711411	21711611	+	933.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4632.0	NM_178199	319185.0		NM_178199	ENSMUSG00000094338	Hist1h2bl	H2b-291a	histone cluster 1, H2bl	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-24355565-4	chr2	24355471	24355671	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10200.0	NM_001039701	16181.0	Mm.882	NM_031167	ENSMUSG00000026981	Il1rn	F630041P17Rik|IL-1ra	interleukin 1 receptor antagonist	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-126531560-2	chr10	126531460	126531660	+	718.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	178831.0	NR_105841	102465224.0		NR_105841	ENSMUSG00000098756	Mir378d	Gm27650|mmu-mir-378d	microRNA 378d	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-37590478-3	chr9	37590393	37590593	+	602.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23227.0	NM_011449	20686.0	Mm.8637	NM_011449	ENSMUSG00000001948	Spa17	Sp17	sperm autoantigenic protein 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-32389417-4	chr17	32389307	32389507	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033525)	promoter-TSS (NR_033525)	32.0	NR_033525	22404.0	Mm.274948	NM_011717	ENSMUSG00000024050	Wiz	-	widely-interspaced zinc finger motifs	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-119429529-4	chr13	119429394	119429594	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145457, intron 1 of 10)	CpG	592.0	NM_145457	218693.0	Mm.490243	NM_145457	ENSMUSG00000025451	Paip1	PAIP-1	polyadenylate binding protein-interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101553498-4	chr7	101553401	101553601	+	988.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007490, intron 2 of 2)	intron (NM_007490, intron 2 of 2)	2301.0	NM_007490	11871.0	Mm.439746	NM_007490	ENSMUSG00000092517	Art2a-ps	ARTC2|Art2a|Ly92a|Rt-6|Rt6|Rt6-1	ADP-ribosyltransferase 2a, pseudogene	protein-coding	-1.12007123334057	-1.23751541721827	-0.799610455274731	-1.25644006657821	-1.26447365240828	-1.23526386158843	-1.24555334641492	-1.25491236783429	-2.40709883940037	0.4691507995815	1
Merged-chr18-35654952-2	chr18	35654852	35655052	+	806.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001270646, exon 1 of 1)	exon (NM_001270646, exon 1 of 1)	247.0	NM_001270646	381148.0	Mm.297784	NM_001270646	ENSMUSG00000073600	Prob1	Gm1614	proline rich basic protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-37106436-4	chr10	37106342	37106542	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32484.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-78370498-3	chr10	78370404	78370604	+	734.388855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-18804.0	NM_053014	28169.0	Mm.141230	NM_053014	ENSMUSG00000001211	Agpat3	AW061257|AW493985|D10Jhu12e|lpaat3	1-acylglycerol-3-phosphate O-acyltransferase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117437392-4	chr10	117437306	117437506	+	906.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10029.0	NR_152734	102634600.0	Mm.399106	NR_152734	ENSMUSG00000112344	Gm32141	-	predicted gene, 32141	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-82189979-4	chr12	82189875	82190075	+	858.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167983, intron 1 of 23)	intron (NM_001167983, intron 1 of 23)	19959.0	NM_001167983	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26234679-4	chr17	26234575	26234775	+	941.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001206335, intron 1 of 12)	B2_Mm2|SINE|B2	9567.0	NM_207217	106581.0	Mm.28844	NM_207217	ENSMUSG00000024187	Fam234a	Itfg3	family with sequence similarity 234, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97997546-4	chr11	97997445	97997645	+	962.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1372.0	NR_152188	217151.0	Mm.277896	NM_207231	ENSMUSG00000038352	Arl5c	Arl12|BC065791	ADP-ribosylation factor-like 5C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-100821702-3	chr5	100821624	100821824	+	819.977783	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172405)	promoter-TSS (NM_172405)	-789.0	NM_172405	70681.0	Mm.486560	NM_172405	ENSMUSG00000035234	Abraxas1	3830405G04Rik|5630400M01Rik|AI506069|AL024423|AV118690|Ccdc98|Fam175a	BRCA1 A complex subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-111503260-4	chr10	111503163	111503363	+	785.020813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	2475.0	NR_033603	382421.0	Mm.245643	NR_033603	ENSMUSG00000111997	Gm5176	EG382421	high mobility group box 2 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-14890102-4	chr8	14890009	14890209	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012000, intron 1 of 2)	intron (NM_012000, intron 1 of 2)	1573.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-104466661-2	chr14	104466561	104466761	+	592.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_011143, exon 2 of 3)	exon (NM_011143, exon 2 of 3)	1338.0	NM_011143	18996.0	Mm.246550	NM_011143	ENSMUSG00000048349	Pou4f1	Brn-3|Brn-3.0|Brn3|Brn3.0|Brn3a|E130119J07Rik	POU domain, class 4, transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55292585-2	chr19	55292485	55292685	+	933.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027976, intron 17 of 21)	B1_Mus1|SINE|Alu	23451.0	NM_001360595	66980.0	Mm.386789	NM_025883	ENSMUSG00000024982	Zdhhc6	2400007G07Rik|5930409M18Rik|AI462345|C77369|DHHC-6	zinc finger, DHHC domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-108017509-4	chr3	108017370	108017570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010358, intron 1 of 7)	intron (NM_010358, intron 1 of 7)	503.0	NM_010358	14862.0	Mm.37199	NM_010358	ENSMUSG00000058135	Gstm1	Gstb-1|Gstb1	glutathione S-transferase, mu 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43394650-4	chr4	43394542	43394742	+	906.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037709, intron 1 of 11)	intron (NM_001037709, intron 1 of 11)	-11860.0	NM_199057	100213.0	Mm.235730	NM_199057	ENSMUSG00000035969	Rusc2	AI840675|mKIAA0375	RUN and SH3 domain containing 2	protein-coding	2.89439800342763	2.86053907348316	3.05714907223867	2.13174910762438	3.13000017159071	1.55636837159346	2.21582290799945	3.72211243121601	0.263997912320458	0.748492718586243	0.998431161219273
Merged-chr4-128716806-2	chr4	128716706	128716906	+	658.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_018774, intron 7 of 14)	intron (NM_018774, intron 7 of 14)	-10765.0	NM_001195083	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-94144852-4	chr2	94144758	94144958	+	928.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019657, intron 1 of 10)	intron (NM_019657, intron 1 of 10)	13051.0	NM_019657	56348.0	Mm.22505	NM_019657	ENSMUSG00000027195	Hsd17b12	2610510O05Rik|AI172963|KIK-I|Kik1	hydroxysteroid (17-beta) dehydrogenase 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-117545754-4	chr4	117545665	117545865	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-4559.0	NM_001356404	140546.0	Mm.235891	NM_080469	ENSMUSG00000033423	Eri3	PINT1|Prnpip1	exoribonuclease 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107722942-2	chr9	107722834	107723034	+	842.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12459.0	NM_011349	20350.0	Mm.12903	NM_011349	ENSMUSG00000034684	Sema3f	Sema4|Semak	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F	protein-coding	1.74566772278691	2.45944886937064	1.27933502583508	2.48338038241101	1.75922326952723	2.11537722413668	2.17462815735198	2.31957655702701	0.0249147549138544	0.979603141821611	0.998431161219273
Merged-chr17-80204665-1	chr17	80204565	80204765	+	548.0	f1_balb.idr	non-coding (NR_036615, exon 4 of 9)	non-coding (NR_036615, exon 4 of 9)	2640.0	NM_001195486	225027.0	Mm.292016	NM_146083	ENSMUSG00000024097	Srsf7	35kDa|9430065L19Rik|9G8|NX-96|Sfrs7	serine/arginine-rich splicing factor 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-41302854-3	chr13	41302756	41302956	+	778.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53012.0	NM_001135577	108934.0	Mm.38578	NM_001135577	ENSMUSG00000091264	Smim13	2900036K02Rik	small integral membrane protein 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-61142465-4	chr11	61142362	61142562	+	861.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021349, intron 2 of 3)	intron (NM_021349, intron 2 of 3)	1627.0	NM_021349	57916.0	Mm.265915	NM_021349	ENSMUSG00000010142	Tnfrsf13b	1200009E08Rik|Taci	tumor necrosis factor receptor superfamily, member 13b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-97196984-3	chr13	97196851	97197051	+	835.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010422, intron 1 of 13)	intron (NM_010422, intron 1 of 13)	1406.0	NM_010422	15212.0	Mm.27816	NM_010422	ENSMUSG00000021665	Hexb	-	hexosaminidase B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-113333264-4	chr6	113333175	113333375	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_133926)	TTS (NM_133926)	6299.0	NM_010957	18294.0	Mm.43612	NM_010957	ENSMUSG00000030271	Ogg1	Mmh	8-oxoguanine DNA-glycosylase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-73222723-4	chr14	73222620	73222820	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009029, intron 17 of 26)	intron (NM_009029, intron 17 of 26)	-15171.0	NM_175116	67168.0	Mm.390681	NM_175116	ENSMUSG00000033446	Lpar6	2610302I02Rik|P2ry5|P2y5	lysophosphatidic acid receptor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3283164-4	chr12	3283070	3283270	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016676, intron 1 of 5)	intron (NM_016676, intron 1 of 5)	26799.0	NM_016676	19325.0	Mm.378993	NM_016676	ENSMUSG00000020671	Rab10	AW107754	RAB10, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-59438634-4	chr4	59438516	59438716	+	934.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163288)	promoter-TSS (NM_001163288)	17.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-60829264-2	chr14	60829164	60829364	+	781.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027436, intron 11 of 18)	intron (NM_027436, intron 11 of 18)	44698.0	NR_040642	70478.0	Mm.274650	NM_027436	ENSMUSG00000021993	Mipep	5730405E07Rik|MIP	mitochondrial intermediate peptidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-65871360-1	chr3	65871260	65871460	+	541.0	f1_c57bl6.idr	Intergenic	Intergenic	86889.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-100837429-4	chr12	100837320	100837520	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145448, intron 3 of 12)	ORR1F|LTR|ERVL-MaLR	58363.0	NM_145448	217830.0	Mm.218590	NM_145448	ENSMUSG00000021185	Dglucy	9030617O03Rik	D-glutamate cyclase	protein-coding	4.39605062861868	3.94347625536955	4.60327623202532	4.35508735892885	3.74778798973441	4.12253728100568	4.54794592655669	2.88242312838788	-0.532160396692513	0.267073871723334	0.769922980421045
Merged-chr9-105034640-3	chr9	105034581	105034781	+	819.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001357439)	TTS (NM_001357439)	-18587.0	NM_053159	94062.0	Mm.29746	NM_053159	ENSMUSG00000032563	Mrpl3	2010320L16Rik|5930422H18Rik|AA407889	mitochondrial ribosomal protein L3	protein-coding	1.62913582187746	3.15435676360603	1.49950108848842	2.48760953361975	3.07045780746021	3.52843668767189	3.55213583680857	3.83101628494399	2.01534662089496	0.00724576271211068	0.0867034518150638
Merged-chr16-57915417-3	chr16	57915336	57915536	+	745.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-160699.0	NM_007739	12837.0	Mm.130388	NM_007739	ENSMUSG00000068196	Col8a1	Col8a-1	collagen, type VIII, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84921723-3	chr8	84921612	84921812	+	852.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019945, intron 12 of 25)	intron (NM_019945, intron 12 of 25)	8377.0	NR_103491	100503676.0	Mm.437155	NR_103491	ENSMUSG00000003812	Gm38426	-	predicted gene, 38426	ncRNA	-0.350197323319571	-0.598838229762639	-0.602204800363215	-0.604794816218183	-0.466364614236671	-0.59807787983917	-0.601463202942234	0.0170113022006365	1.64332210101235	0.542327689811666	1
Merged-chr3-87528911-1	chr3	87528811	87529011	+	585.5	f0_balb.idr	intron (NM_001359750, intron 3 of 4)	intron (NM_001359750, intron 3 of 4)	3333.0	NM_001359750	27049.0	Mm.219460	NM_012051	ENSMUSG00000003382	Etv3	AI414410|METS|Pe1	ets variant 3	protein-coding	0.522271450273575	0.269193889044365	0.26227302204243	0.900211647452102	0.993005660304548	0.270750924947183	0.603859880229495	0.257854126510636	0.317523754459325	0.868823953064487	1
Merged-chr7-126694784-3	chr7	126694689	126694889	+	879.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029420, intron 1 of 5)	MTC|LTR|ERVL-MaLR	994.0	NM_029420	75764.0	Mm.280573	NM_029420	ENSMUSG00000059772	Slx1b	1110030E23Rik|2410170E21Rik|4833422P03Rik|AI853643|Giyd1|Giyd2	SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44135967-2	chr9	44135867	44136067	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359530, intron 1 of 14)	intron (NM_001359530, intron 1 of 14)	1309.0	NM_001359530	84004.0	Mm.275003	NM_023061	ENSMUSG00000032135	Mcam	1-gicerin|AV025631|CD146|CD149|Muc18|s-endo|s-gicerin	melanoma cell adhesion molecule	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-108224808-3	chr11	108224725	108224925	+	828.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011101, intron 2 of 16)	intron (NM_011101, intron 2 of 16)	119063.0	NM_011101	18750.0	Mm.222178	NM_011101	ENSMUSG00000050965	Prkca	AI875142|Pkca	protein kinase C, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106093329-3	chr11	106093229	106093429	+	849.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011947, intron 1 of 15)	MIRc|SINE|MIR	8427.0	NM_011947	26406.0	Mm.27041	NM_011947	ENSMUSG00000020700	Map3k3	AW548911|MAPKKK3|Mekk3|mKIAA4031	mitogen-activated protein kinase kinase kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-33733043-6	chr8	33732956	33733156	+	977.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167922, intron 1 of 7)	intron (NM_001167922, intron 1 of 7)	717.0	NM_001167922	68153.0	Mm.286104	NM_026584	ENSMUSG00000031585	Gtf2e2	34kDa|AI462509|C330006J08Rik	general transcription factor II E, polypeptide 2 (beta subunit)	protein-coding	1.9354505529612	1.36155115405036	2.54095312148596	2.55463952205019	1.95100129047995	2.02683253806247	2.64954417513903	2.1732197005666	0.0822166584402075	0.92985931764256	0.998431161219273
Merged-chr10-8844818-2	chr10	8844718	8844918	+	929.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 2 of 19)	intron (NM_175155, intron 2 of 19)	41252.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-20594632-2	chr10	20594532	20594732	+	982.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013875, intron 2 of 12)	intron (NM_013875, intron 2 of 12)	-46304.0	NM_001347366	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-148501068-3	chr4	148500960	148501160	+	839.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039554)	promoter-TSS (NM_001039554)	-598.0	NM_001039554	654812.0	Mm.388929	NM_001039554	ENSMUSG00000028989	Angptl7	-	angiopoietin-like 7	protein-coding	0.8174969472238	0.50318746437327	1.07470132118526	0.477646840480035	1.20359372319964	0.506353291704499	0.492098469621998	1.99730307529828	1.89403526716627	0.24792243000037	0.747255061583765
Merged-chr4-45529392-2	chr4	45529341	45529541	+	649.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033306, intron 1 of 5)	intron (NM_001033306, intron 1 of 5)	1387.0	NM_001033306	230126.0	Mm.251716	NM_001033306	ENSMUSG00000044813	Shb	BC028832	src homology 2 domain-containing transforming protein B	protein-coding	0.898902108790429	0.0632091165476189	0.0560436181964226	0.0504725667068146	0.207272664294425	0.0648159967116881	0.05762929415884	0.930623872716225	0.239906024095251	0.91126195414592	1
Merged-chr19-41371492-4	chr19	41371400	41371600	+	951.025024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 2 of 16)	L1MA9|LINE|L1	13570.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	5.00809622335921	3.97261710115082	4.55587362472865	4.72329250408804	4.06323798241272	4.98459597546756	2.83759129599104	3.48338713671501	-0.707870584711069	0.164459293892424	0.627932209944809
Merged-chr7-80386683-4	chr7	80386575	80386775	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010194, intron 3 of 18)	intron (NM_010194, intron 3 of 18)	1271.0	NM_010194	14159.0	Mm.48757	NM_010194	ENSMUSG00000053158	Fes	AI586313|BB137047|FPS|c-fes	feline sarcoma oncogene	protein-coding	3.06773996004335	2.70570225879812	1.99010434794641	4.15565218366933	3.70739846968287	3.94767451010049	3.75696802242963	3.42732215990422	0.728939438954819	0.258445617927401	0.758520186862268
Merged-chr6-39726392-3	chr6	39726310	39726510	+	823.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_139294)	promoter-TSS (NM_139294)	-947.0	NM_139294	109880.0	Mm.245513	NM_139294	ENSMUSG00000002413	Braf	9930012E13Rik|AA120551|AA387315|AA473386|B-raf|Braf-2|Braf2|C230098H17|C87398|D6Ertd631e	Braf transforming gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117842238-3	chr11	117842132	117842332	+	853.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger5|DNA|TcMar-Tigger	-7005.0	NM_001012273	11799.0	Mm.8552	NM_009689	ENSMUSG00000017716	Birc5	AAC-11|Api4|TIAP|survivin40	baculoviral IAP repeat-containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-13341439-2	chr11	13341339	13341539	+	575.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur1|LINE|L1	837602.0	NR_131011	75280.0	Mm.108492	NR_131011	ENSMUSG00000085452	4930554G24Rik	-	RIKEN cDNA 4930554G24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-59881063-3	chr2	59880941	59881141	+	645.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159636, intron 1 of 10)	Lx8|LINE|L1	1565.0	NM_001159636	72137.0	Mm.288734	NM_028118	ENSMUSG00000026988	Wdsub1	1700048E19Rik|2610014F08Rik	WD repeat, SAM and U-box domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-21850262-2	chr14	21850162	21850362	+	792.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_176925, intron 2 of 2)	intron (NM_176925, intron 2 of 2)	-1352.0	NM_026965	69156.0	Mm.11827	NM_026965	ENSMUSG00000021773	Comtd1	1810030M08Rik|MT773	catechol-O-methyltransferase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98943537-4	chr11	98943418	98943618	+	952.275024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177303, intron 1 of 8)	intron (NM_001177303, intron 1 of 8)	3807.0	NM_001177303	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-63930221-3	chr9	63930141	63930341	+	633.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	91818.0	NM_008542	17130.0	Mm.325757	NM_008542	ENSMUSG00000036867	Smad6	Madh6|b2b390Clo	SMAD family member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-46076110-2	chr11	46076010	46076210	+	592.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291890, intron 3 of 22)	(CAGT)n|Simple_repeat|Simple_repeat	20126.0	NM_001291891	11492.0	Mm.89940	NM_009616	ENSMUSG00000011256	Adam19	AL024287|MADDAM|MTLNB|Mltnb	a disintegrin and metallopeptidase domain 19 (meltrin beta)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132040826-2	chr4	132040726	132040926	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183428, intron 1 of 20)	RSINE1|SINE|B4	8252.0	NM_001128606	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-50382953-3	chr3	50382867	50383067	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011990, intron 7 of 11)	intron (NM_011990, intron 7 of 11)	60646.0	NM_011990	26570.0	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	1.77840026203	3.91856761435167	2.78060295413783	2.83075281685371	4.01528293609669	4.8294428329592	3.74559209294054	3.95024613092649	1.70420974778341	0.00599767440291039	0.0763907616625466
Merged-chr5-117307855-4	chr5	117307754	117307954	+	963.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-11412.0	NM_001033311	231668.0	Mm.298603	NM_001033311	ENSMUSG00000066894	Vsig10	-	V-set and immunoglobulin domain containing 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141617475-4	chr4	141617394	141617594	+	957.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151462, intron 2 of 5)	intron (NR_151462, intron 2 of 5)	1139.0	NM_145987	213989.0	Mm.34891	NM_145987	ENSMUSG00000043085	Tmem82	-	transmembrane protein 82	protein-coding	2.54274533889291	2.7483667797952	1.73390645718991	2.06977487141765	3.12002985462521	2.38166964614777	3.03747504653853	2.36646236936422	0.915941940472075	0.251664314118856	0.749698831323701
Merged-chr6-108445216-4	chr6	108445121	108445321	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 44 of 61)	intron (NM_010585, intron 44 of 61)	-44522.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67220452-2	chr10	67220352	67220552	+	686.333374	f1_balb.idr|f1_c57bl6.idr	exon (NM_001242396, exon 7 of 25)	exon (NM_001242396, exon 7 of 25)	34702.0	NM_001242396	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-136200390-2	chr5	136200290	136200490	+	603.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-1436.0	NM_025774	66801.0	Mm.425295	NM_025774	ENSMUSG00000039737	Prkrip1	8430424D23Rik|C114	Prkr interacting protein 1 (IL11 inducible)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-125601238-3	chr7	125601136	125601336	+	842.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2193.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	4.22633046369161	4.31990998197227	3.1221475861078	3.72953169185284	3.86226282140463	3.91915854420204	3.36810451334965	2.6332419554715	-0.567678290124184	0.306933448372018	0.807466930324691
Merged-chr12-85747270-2	chr12	85747170	85747370	+	703.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_145447, exon 1 of 10)	exon (NM_145447, exon 1 of 10)	731.0	NM_145447	217721.0	Mm.301076	NM_145447	ENSMUSG00000034258	Flvcr2	CCT|Mfsd7c	feline leukemia virus subgroup C cellular receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-71830002-2	chr12	71829902	71830102	+	605.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1066.0	NM_026102	208846.0	Mm.87417	NM_026102	ENSMUSG00000034574	Daam1	-	dishevelled associated activator of morphogenesis 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-24964272-1	chr19	24964172	24964372	+	636.0	f1_balb.idr	Intergenic	Lx4A|LINE|L1	-2656.0	NM_146097	226043.0	Mm.272127	NM_146097	ENSMUSG00000024878	Cbwd1	AV349248|BC018472	COBW domain containing 1	protein-coding	0.447365987577656	1.16852021387157	0.46913545539167	1.35882304273432	0.766033876320032	0.481834957995224	1.23795453303979	0.462451375041474	-0.688803230441501	0.693484391444708	0.997536945022547
Merged-chr4-132884479-4	chr4	132884382	132884582	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133887)	promoter-TSS (NM_133887)	-24.0	NM_133887	100226.0	Mm.28237	NM_133887	ENSMUSG00000028879	Stx12	AI850350|AU041521|Stx13	syntaxin 12	protein-coding	4.31144488490437	5.11478198572811	5.44445877529416	4.94728266119071	4.92047337836582	4.98143662448795	5.10817684464617	4.77914514524085	-0.0649876880504339	0.850295494625703	0.998431161219273
Merged-chr14-30625164-4	chr14	30625150	30625350	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011103, intron 1 of 17)	intron (NM_011103, intron 1 of 17)	958.0	NM_011103	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-43654702-4	chr7	43654611	43654811	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031181, intron 6 of 6)	intron (NM_031181, intron 6 of 6)	5450.0	NM_031181	83382.0	Mm.157702	NM_031181	ENSMUSG00000030474	Siglece	Cd170|Siglec12|Siglec5|Siglec9|Siglecl1|mSiglec-E	sialic acid binding Ig-like lectin E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-99748884-2	chr12	99748784	99748984	+	677.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030172, intron 5 of 5)	intron (NM_030172, intron 5 of 5)	-120910.0	NR_045288	73457.0	Mm.383439	NR_045288	ENSMUSG00000100211	1700064M15Rik	-	RIKEN cDNA 1700064M15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-164839490-2	chr2	164839390	164839590	+	821.125	f1_balb.idr|f1_c57bl6.idr	TTS (NM_011125)	TTS (NM_011125)	5717.0	NM_008906	19025.0	Mm.359633	NM_008906	ENSMUSG00000017760	Ctsa	AU019505|PPCA|Ppgb	cathepsin A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80659775-2	chr10	80659675	80659875	+	546.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-2704.0	NM_145361	208198.0	Mm.60720	NM_145361	ENSMUSG00000003344	Btbd2	2610037C03Rik|4930512K17Rik	BTB (POZ) domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-140577607-4	chr6	140577497	140577697	+	693.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144920, intron 22 of 30)	intron (NM_144920, intron 22 of 30)	-45066.0	NM_178803	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-15345781-4	chr3	15345673	15345873	+	875.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13471.0	NM_001076679	751864.0	Mm.431296	NM_001076679	ENSMUSG00000078783	Gm9733	-	predicted gene 9733	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127188754-3	chr10	127188652	127188852	+	774.216675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358557)	promoter-TSS (NM_001358557)	20.0	NM_001358557	52666.0	Mm.272230	NM_028027	ENSMUSG00000019467	Arhgef25	2410008H17Rik|D10Ertd610e|GEFT	Rho guanine nucleotide exchange factor (GEF) 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-80171379-4	chr11	80171251	80171451	+	892.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172133, intron 7 of 10)	MIR3|SINE|MIR	-12521.0	NM_028019	71956.0	Mm.22985	NM_028019	ENSMUSG00000020707	Rnf135	0610037N03Rik|2410006N06Rik	ring finger protein 135	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-73129498-3	chr11	73129286	73129486	+	711.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361245, intron 21 of 30)	intron (NM_001361245, intron 21 of 30)	8908.0	NM_010353	14841.0	Mm.42045	NM_010353	ENSMUSG00000050107	Haspin	Gsg2	histone H3 associated protein kinase	protein-coding	-0.0141702193287115	0.604424012744958	-0.00348118802130337	0.29105660206599	0.130432818380601	0.00291013345167368	-0.00233138287263815	0.522920673638429	-0.465960417190603	0.826233315864677	1
Merged-chr16-36939321-4	chr16	36939210	36939410	+	994.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008225, intron 3 of 13)	RLTR40|LTR|ERVK	4327.0	NM_008225	15163.0	Mm.4091	NM_008225	ENSMUSG00000022831	Hcls1	AW213261|HS1	hematopoietic cell specific Lyn substrate 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-150673702-4	chr5	150673607	150673807	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346503)	promoter-TSS (NM_001346503)	-120.0	NM_175310	100710.0	Mm.32959	NM_175310	ENSMUSG00000034021	Pds5b	AI646570|AS3|AW212954|Aprin|Tg(Wap-ERBB2)229Wzw|WAP-Her-2|mKIAA0979	PDS5 cohesin associated factor B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-108936683-4	chr9	108936577	108936777	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025407)	promoter-TSS (NM_025407)	29.0	NM_025407	22273.0	Mm.335460	NM_025407	ENSMUSG00000025651	Uqcrc1	1110032G10Rik	ubiquinol-cytochrome c reductase core protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-45492420-4	chr5	45492336	45492536	+	918.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024434)	promoter-TSS (NM_024434)	-938.0	NM_024434	66988.0	Mm.286830	NM_024434	ENSMUSG00000039682	Lap3	2410015L10Rik|AA410100|LAP-3|Lap|Lapep|Pep-7|Pep-S|Pep7|Peps	leucine aminopeptidase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-46981291-4	chr14	46981176	46981376	+	731.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037221, intron 2 of 12)	intron (NM_001037221, intron 2 of 12)	-20064.0	NM_001163433	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	2.69917936134719	2.7765015361797	3.303226526416	3.55310453253583	3.46504645963679	2.79699324989295	2.95017342672247	2.96379453344197	-0.0989351549474236	0.876450034321743	0.998431161219273
Merged-chr9-59482603-4	chr9	59482504	59482704	+	866.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045640)	promoter-TSS (NR_045640)	-863.0	NR_045640	100504377.0	Mm.446631	NR_045640		Gm20199	-	predicted gene, 20199	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94918042-2	chr10	94917942	94918142	+	574.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_018797, intron 2 of 30)	intron (NM_018797, intron 2 of 30)	26536.0	NM_018797	54712.0	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-68854015-3	chr11	68853994	68854194	+	770.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023668)	promoter-TSS (NM_023668)	-963.0	NM_023668	83431.0	Mm.31979	NM_023668	ENSMUSG00000018736	Ndel1	2600006O07Rik|MITAP1|NUDEL|mNudel	nudE neurodevelopment protein 1 like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-44999303-2	chr13	44999203	44999403	+	997.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025772, intron 1 of 9)	intron (NM_025772, intron 1 of 9)	2793.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-13651052-3	chr8	13650867	13651067	+	717.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 1 of 23)	MTC|LTR|ERVL-MaLR	26620.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	-1.53722258964646	-1.35557023456888	-1.51521609278655	-1.52305243984666	-1.24945022075946	-1.50360887271967	-1.51305647152326	-1.52164973746956	0.640848314145952	0.855386040730507	1
Merged-chr12-100161033-1	chr12	100160933	100161133	+	627.0	f1_c57bl6.idr	Intergenic	ORR1A0|LTR|ERVL-MaLR	-1380.0	NM_183155	217827.0	Mm.224076	NM_183155	ENSMUSG00000021179	Nrde2	6720454P05Rik	nrde-2 necessary for RNA interference, domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-40790680-4	chr1	40790581	40790781	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172499)	promoter-TSS (NM_172499)	-24.0	NM_172499	211798.0	Mm.235443	NM_172499	ENSMUSG00000041945	Mfsd9	4931419K03Rik	major facilitator superfamily domain containing 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101905817-4	chr7	101905733	101905933	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025605)	promoter-TSS (NM_025605)	-4.0	NM_025605	66508.0	Mm.30003	NM_025605	ENSMUSG00000030842	Lamtor1	2400001E08Rik|Pdro|p18	late endosomal/lysosomal adaptor, MAPK and MTOR activator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-130075090-4	chr5	130074943	130075143	+	984.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013837, intron 1 of 5)	intron (NM_013837, intron 1 of 5)	1717.0	NM_013837	22021.0	Mm.332720	NM_013837	ENSMUSG00000034118	Tpst1	R75054|Tango13a	protein-tyrosine sulfotransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-125389036-2	chr1	125388936	125389136	+	880.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	46691.0	NM_001205386	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141631525-2	chr4	141631425	141631625	+	586.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001033150, exon 10 of 20)	exon (NM_001033150, exon 10 of 20)	-7691.0	NM_001013780	384071.0	Mm.295682	NM_001013780	ENSMUSG00000040740	Slc25a34	Gm1369	solute carrier family 25, member 34	protein-coding	-0.953721354153451	-1.41025554057125	-1.42001056191158	-1.42802362688808	-1.44024889148474	-1.40814158675276	-1.41780223890411	-1.42658929208844	-2.11310844444413	0.543369238581748	1
Merged-chr19-16331135-2	chr19	16331035	16331235	+	872.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008139, intron 3 of 6)	intron (NM_008139, intron 3 of 6)	-16131.0	NR_105832	102465218.0		NR_105832	ENSMUSG00000098718	Mir496b	Gm28028|mmu-mir-496b	microRNA 496b	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-10703564-2	chr17	10703445	10703645	+	719.0	f0_balb.idr|f1_balb.idr	intron (NM_027032, intron 2 of 4)	intron (NM_027032, intron 2 of 4)	136646.0	NM_027032	69310.0	Mm.18889	NM_027032	ENSMUSG00000037196	Pacrg	1700008H23Rik	PARK2 co-regulated	protein-coding	-0.402454597721411	-0.389180815453793	-0.393526219237359	-0.396880990135336	0.262274807790508	-0.388201722855129	0.197157589385465	-0.396294779510703	3.67449807053671	0.160603356883233	1
Merged-chr13-95639827-3	chr13	95639747	95639947	+	996.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027711, intron 30 of 35)	intron (NM_027711, intron 30 of 35)	-21381.0	NM_010169	14062.0	Mm.24816	NM_010169	ENSMUSG00000048376	F2r	AI482343|Cf2r|Par1|ThrR	coagulation factor II (thrombin) receptor	protein-coding	4.91297556128378	5.07689768287998	4.85922165163359	4.62683515765741	3.87168000800943	3.60235333876879	3.36255049414937	2.51955545416485	-1.91162912655162	1.87187733474281e-05	0.000769136447337129
Merged-chr7-143283992-7	chr7	143283956	143284156	+	716.857117	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_001461, exon 1 of 1)	non-coding (NR_001461, exon 1 of 1)	12491.0	NR_001461	63830.0	Mm.356096	NR_001461	ENSMUSG00000101609	Kcnq1ot1	Kvlqt1-as|Lit1|Tssc8	KCNQ1 overlapping transcript 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-22058412-3	chr3	22058311	22058511	+	849.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18241.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-45319936-2	chr14	45319836	45320036	+	727.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA7|LINE|L1	-1364.0	NM_015774	50527.0	Mm.387108	NM_015774	ENSMUSG00000021831	Ero1l	ERO1-L|Ero1a	ERO1-like (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-24457807-1	chr7	24457707	24457907	+	634.0	f1_c57bl6.idr	Intergenic	Intergenic	-4676.0	NM_011113	18793.0	Mm.1359	NM_011113	ENSMUSG00000046223	Plaur	Cd87|u-PAR|uPAR	plasminogen activator, urokinase receptor	protein-coding	0.895284766479796	0.956171057111522	1.98763158346012	2.0122125463703	1.83080442781791	1.86391274032465	1.1753262792687	1.14390434245293	-0.10926018556217	0.932281756048843	0.998431161219273
Merged-chr17-55803259-2	chr17	55803159	55803359	+	586.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_139138, intron 11 of 16)	Lx3_Mus|LINE|L1	53275.0	NM_139138	52614.0	Mm.210497	NM_139138	ENSMUSG00000032915	Adgre4	D17Ertd479e|Egf-tm7|Emr4|Fire|Gpr127	adhesion G protein-coupled receptor E4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-66443011-2	chr8	66442911	66443111	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175188, intron 6 of 7)	intron (NM_175188, intron 6 of 7)	43519.0	NM_025465	66282.0	Mm.294985	NM_025465	ENSMUSG00000025591	Tma16	1810029B16Rik	translation machinery associated 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-84341226-4	chr15	84341116	84341316	+	934.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162500, intron 12 of 12)	intron (NM_001162500, intron 12 of 12)	15097.0	NM_001162500	64099.0	Mm.251356	NM_022321	ENSMUSG00000022439	Parvg	AI413459	parvin, gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-104985891-3	chr13	104985793	104985993	+	554.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029879, intron 2 of 5)	intron (NM_029879, intron 2 of 5)	69037.0	NM_029879	52882.0	Mm.100348	NM_029879	ENSMUSG00000021719	Rgs7bp	A930030I01Rik|AI842293|D13Bwg1146e|R7bp	regulator of G-protein signalling 7 binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81187898-2	chr10	81187798	81187998	+	788.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001190473, intron 2 of 8)	B1_Mur2|SINE|Alu	3980.0	NM_007828	13144.0	Mm.10294	NM_007828	ENSMUSG00000034974	Dapk3	ZIPK|dlk	death-associated protein kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-47275187-4	chr4	47275119	47275319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009928, intron 14 of 39)	intron (NM_009928, intron 14 of 39)	67207.0	NM_009928	12819.0	Mm.233547	NM_009928	ENSMUSG00000028339	Col15a1	-	collagen, type XV, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-102820734-3	chr2	102820631	102820831	+	754.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039150, intron 13 of 13)	intron (NM_001039150, intron 13 of 13)	-73971.0	NR_153853	102637542.0	Mm.371582	NR_153852		Gm13872	-	predicted gene 13872	ncRNA	2.96568511500992	3.41926756139888	3.90588659207889	3.13067629228329	2.06937995626427	3.36129287657881	2.44052295801149	1.4799550999085	-1.53258032503271	0.0430238473727744	0.297350299987642
Merged-chr13-73604326-2	chr13	73604226	73604426	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_146047, exon 1 of 17)	exon (NM_146047, exon 1 of 17)	324.0	NM_146047	218335.0	Mm.30099	NM_146047	ENSMUSG00000021610	Clptm1l	C130052I12Rik|Crr9	CLPTM1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-65802445-4	chr18	65802321	65802521	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025468, intron 1 of 5)	intron (NM_025468, intron 1 of 5)	1843.0	NM_025468	66286.0	Mm.27800	NM_025468	ENSMUSG00000024516	Sec11c	1810029G24Rik|Sec11l3	SEC11 homolog C, signal peptidase complex subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-65230751-4	chr1	65230643	65230843	+	996.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310624, intron 12 of 41)	intron (NM_001310624, intron 12 of 41)	44058.0	NM_011086	18711.0	Mm.38370	NM_011086	ENSMUSG00000025949	Pikfyve	5230400C17Rik|Pip5k|Pip5k3|Pipk5k3|PipkIII|p235	phosphoinositide kinase, FYVE type zinc finger containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3283002-4	chr19	3282905	3283105	+	996.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009212)	promoter-TSS (NM_009212)	5.0	NM_009212	20589.0	Mm.3179	NM_009212	ENSMUSG00000024831	Ighmbp2	AEP|Catf1|RIPE3b1|Smbp-2|Smbp2|Smubp2|nmd|sma	immunoglobulin mu binding protein 2	protein-coding	3.15171294760282	2.47901505356525	2.535246770466	2.18106076880337	2.84197256862753	3.08460754165995	2.67849714175265	2.80551472721116	0.405010519358858	0.571275024968015	0.963113501110011
Merged-chr8-84183073-2	chr8	84182920	84183120	+	776.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4059.0	NR_029821	723819.0		NR_029821	ENSMUSG00000065483	Mir181c	Mirn181c|mir-181c	microRNA 181c	ncRNA	0.182633046446461	-0.428088993843024	-0.431866646884816	-0.434773813393953	-0.438870981780853	-0.0754314282941905	-0.255157128447524	-0.434266404527683	-0.494119583203225	0.847908570706721	1
Merged-chr6-123289911-4	chr6	123289817	123290017	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019948)	promoter-TSS (NM_019948)	-46.0	NM_019948	56619.0	Mm.248327	NM_019948	ENSMUSG00000030142	Clec4e	C86253|Clecsf9|Mincle	C-type lectin domain family 4, member e	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-160905718-2	chr1	160905618	160905818	+	910.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024952)	promoter-TSS (NM_001024952)	-693.0	NM_001024952	381305.0	Mm.329667	NM_001024952	ENSMUSG00000040423	Rc3h1	5730557L09Rik|Gm551|N28103|mKIAA2025	RING CCCH (C3H) domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46166665-2	chr8	46166565	46166765	+	602.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357216, intron 2 of 5)	intron (NM_001357216, intron 2 of 5)	2661.0	NM_001357215	66756.0	Mm.133623	NM_025747	ENSMUSG00000031631	Cfap97	1110068E21Rik|4933411K20Rik|AW049273|Kiaa1430	cilia and flagella associated protein 97	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-130919890-4	chr4	130919780	130919980	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010686, intron 1 of 7)	intron (NM_010686, intron 1 of 7)	6546.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-94005893-3	chr13	94005755	94005955	+	765.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51941.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27711759-2	chr2	27711659	27711859	+	693.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290482, intron 1 of 9)	intron (NM_001290482, intron 1 of 9)	1176.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-92280528-1	chr5	92280428	92280628	+	924.0	f1_c57bl6.idr	Intergenic	Intergenic	-2347.0	NM_025972	67111.0	Mm.28890	NM_025972	ENSMUSG00000029413	Naaa	2210023K21Rik|3830414F09Rik|Asahl	N-acylethanolamine acid amidase	protein-coding	-0.208291651046736	0.15168999619938	-0.341599736578166	0.279201033303497	-0.349427376638596	-0.336437892045383	-0.340671256758438	-0.344278822728231	-3.61164961480927	0.13705128939862	1
Merged-chr16-22498304-1	chr16	22498204	22498404	+	553.0	f1_balb.idr	intron (NM_001346673, intron 21 of 23)	intron (NM_001346673, intron 21 of 23)	-13176.0	NR_130988	78082.0	Mm.243927	NR_130988	ENSMUSG00000089874	9230117E06Rik	-	RIKEN cDNA 9230117E06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16183948-1	chr7	16183848	16184048	+	736.0	f1_balb.idr	intron (NM_001277988, intron 9 of 12)	intron (NM_001277988, intron 9 of 12)	8553.0	NR_102730	17537.0	Mm.360516	NM_008627	ENSMUSG00000041420	Meis3	AI573393|Mrg2	Meis homeobox 3	protein-coding	1.16379452114953	1.26255863819001	1.78565441096462	1.50458546764102	1.44415421238462	1.74544015850023	1.80020476136803	1.51189435247214	0.63238327332396	0.572221171287683	0.963895958411123
Merged-chr19-55862710-3	chr19	55862604	55862804	+	691.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_138565, intron 4 of 15)	intron (NR_138565, intron 4 of 15)	-32617.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-88652183-2	chr17	88652083	88652283	+	865.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16477.0	NM_023630	71828.0	Mm.61330	NM_023630	ENSMUSG00000024154	Gtf2a1l	1700011N16Rik|Alf|Gtf2a1lf	general transcription factor IIA, 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-10178335-2	chr18	10178235	10178435	+	789.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009071, intron 1 of 32)	B2_Mm2|SINE|B2	3457.0	NM_009071	19877.0	Mm.6710	NM_009071	ENSMUSG00000024290	Rock1	1110055K06Rik|Rock-I	Rho-associated coiled-coil containing protein kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150891480-4	chr4	150891380	150891580	+	976.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	18441.0	NM_020569	57320.0	Mm.277349	NM_020569	ENSMUSG00000028964	Park7	DJ-1|Dj1	Parkinson disease (autosomal recessive, early onset) 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-32813146-4	chr16	32813048	32813248	+	926.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2702.0	NM_001256309	381043.0	Mm.303864	NM_001256309	ENSMUSG00000094430	Smbd1	Gm1743|Gm933	somatomedin B domain containing 1	protein-coding	3.5815687307762	3.72194368901497	3.52578796534284	3.26386434770665	3.12172535285483	3.58744890612119	3.83258226682113	2.58258146924558	-0.268095632735488	0.638302057617063	0.982599433509505
Merged-chr8-41374775-4	chr8	41374681	41374881	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019734)	promoter-TSS (NM_019734)	-84.0	NM_019734	11886.0	Mm.22547	NM_019734	ENSMUSG00000031591	Asah1	2310081N20Rik|AC|Asah	N-acylsphingosine amidohydrolase 1	protein-coding	6.01103081353255	6.63080156217694	6.70815794410932	6.53081299898731	5.91947130074706	5.85128027745067	6.12284182509175	5.68922190187604	-0.637316837822606	0.00610960391430289	0.0774327758068374
Merged-chr10-85952117-7	chr10	85952019	85952219	+	974.3843380000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145422, intron 3 of 11)	intron (NM_145422, intron 3 of 11)	5674.0	NM_145422	28088.0	Mm.9257	NM_145422	ENSMUSG00000001783	Rtcb	AI255213|AI463255|D10Wsu52e|FAAP|HSPC117	RNA 2',3'-cyclic phosphate and 5'-OH ligase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111572619-2	chr12	111572519	111572719	+	936.25	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045295, exon 2 of 2)	non-coding (NR_045295, exon 2 of 2)	1783.0	NR_045295	100504687.0	Mm.26072	NR_045295	ENSMUSG00000096995	2810029C07Rik	AU017849	RIKEN cDNA 2810029C07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-38143303-4	chr3	38143185	38143385	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	64834.0	NR_040541	71342.0	Mm.410782	NR_040541	ENSMUSG00000106002	5430434I15Rik	-	RIKEN cDNA 5430434I15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-84058219-2	chr17	84058119	84058319	+	837.083374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20441.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-65569526-2	chr1	65569426	65569626	+	739.700012	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR10|LTR|ERVK	258269.0	NM_139270	213527.0	Mm.294225	NM_139270	ENSMUSG00000025946	Pth2r	Pthr2	parathyroid hormone 2 receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-56874726-4	chr18	56874615	56874815	+	710.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177115, intron 1 of 4)	intron (NM_177115, intron 1 of 4)	50833.0	NM_177115	320253.0	Mm.312623	NM_177115	ENSMUSG00000032656	March3	6330411I15Rik|A530081L18Rik|AI843639|MARCH-III	membrane-associated ring finger (C3HC4) 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-78152089-2	chr10	78151989	78152189	+	891.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17679.0	NM_138601	28295.0	Mm.268691	NM_138601	ENSMUSG00000053329	D10Jhu81e	C21orf33|ES1	DNA segment, Chr 10, Johns Hopkins University 81 expressed	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6242480-4	chr19	6242370	6242570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194348, intron 1 of 39)	intron (NM_194348, intron 1 of 39)	802.0	NM_194348	329015.0	Mm.277384	NM_194348	ENSMUSG00000024773	Atg2a	1810013C15Rik|A830054M12|BC023754|mKIAA0404	autophagy related 2A	protein-coding	0.3029280766489	-0.109921481150065	0.0448437720635964	0.0299980727905735	0.312231544823711	-0.109025363894077	-0.113008818495781	0.0325936485345259	-0.270770369315906	0.897504655788527	1
Merged-chr2-71867649-2	chr2	71867538	71867738	+	789.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_039557, intron 3 of 3).2	intron (NR_039557, intron 3 of 3).2	-5586.0	NM_172665	228026.0	Mm.34411	NM_172665	ENSMUSG00000006494	Pdk1	B830012B01|D530020C15Rik	pyruvate dehydrogenase kinase, isoenzyme 1	protein-coding	1.12322178777429	0.69541430628709	1.77773835982458	0.669915742514156	1.54429524785983	1.68323740395701	0.684302319893879	0.671886826995925	0.270204987048357	0.864063945870347	0.998431161219273
Merged-chr1-156449223-1	chr1	156449123	156449323	+	587.5	f0_balb.idr	intron (NM_009230, intron 3 of 15)	intron (NM_009230, intron 3 of 15)	25105.0	NM_009230	20652.0	Mm.28099	NM_009230	ENSMUSG00000026600	Soat1	8430426K15Rik|ACAT-1|AW550831|Acact|ald|hid	sterol O-acyltransferase 1	protein-coding	-0.301750419094652	0.449595325930281	0.174561953124429	-0.295693514523031	-0.149925900668039	-0.286272115440706	-0.291009711721271	-0.295056788446153	-2.87854062148878	0.234350076442403	1
Merged-chr2-13413708-4	chr2	13413591	13413791	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081084, intron 27 of 66)	intron (NM_001081084, intron 27 of 66)	78185.0	NM_001081084	65969.0	Mm.313915	NM_001081084	ENSMUSG00000026726	Cubn	AA408369|AL022750|D2Wsu88e	cubilin (intrinsic factor-cobalamin receptor)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-71383751-3	chr10	71383655	71383855	+	945.2666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001347191, exon 6 of 6)	3' UTR (NM_001347191, exon 6 of 6)	35992.0	NM_027184	69718.0	Mm.245867	NM_027184	ENSMUSG00000060733	Ipmk	2410017C19Rik|AA408208|Impk	inositol polyphosphate multikinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53067388-2	chr4	53067288	53067488	+	693.599976	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 28 of 49)	intron (NM_013454, intron 28 of 49)	55508.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-26749268-3	chr19	26749147	26749347	+	794.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026003, intron 1 of 8)	intron (NM_026003, intron 1 of 8)	844.0	NM_026003	67155.0	Mm.491146	NM_011416	ENSMUSG00000024921	Smarca2	2610209L14Rik|SNF2alpha|Snf2l2|brahma|brm	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-88224662-3	chr1	88224564	88224764	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13D3A1|LTR|ERVK	-2356.0	NM_001281466	100040766.0	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	Heatr7b1	maestro heat-like repeat family member 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-46154523-4	chr17	46154420	46154620	+	921.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025649)	promoter-TSS (NM_025649)	-969.0	NM_025649	66591.0	Mm.272024	NM_025649	ENSMUSG00000034509	Mad2l1bp	0610009D16Rik|2510031P20Rik|AU018945|AW550977|C76045|CMT2A|CMT2B|Mad2lbp|mKIAA0110	MAD2L1 binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69689830-4	chr11	69689758	69689958	+	867.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011614, intron 5 of 6)	intron (NM_011614, intron 5 of 6)	-4304.0	NM_023517	69583.0	Mm.8983	NM_023517	ENSMUSG00000089669	Tnfsf13	2310026N09Rik|April|Tall2|Tnlg7b|Trdl1	tumor necrosis factor (ligand) superfamily, member 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124623184-4	chr5	124623138	124623338	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026486, intron 14 of 18)	intron (NM_026486, intron 14 of 18)	-5814.0	NM_011596	21871.0	Mm.1158	NM_011596	ENSMUSG00000038023	Atp6v0a2	8430408C20Rik|AI385560|ATP6a2|AW489264|Atp6n1d|Atp6n2|C76904|ISF|J6B7|SHIF|Stv1|TJ6M|TJ6s|Tj6|V-ATPase 116 kDa|V-ATPase a2	ATPase, H+ transporting, lysosomal V0 subunit A2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-84988150-4	chr2	84988062	84988262	+	711.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016914)	promoter-TSS (NM_016914)	-53.0	NM_016914	53856.0	Mm.19943	NM_016914	ENSMUSG00000027072	Prg3	MBP2|MBPH	proteoglycan 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-45005325-4	chr13	45005209	45005409	+	949.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3213.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-31872918-7	chr11	31872902	31873102	+	874.045349	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001290676, exon 1 of 9)	exon (NM_001290676, exon 1 of 9)	2062.0	NM_026252	67579.0	Mm.339792	NM_026252	ENSMUSG00000020300	Cpeb4	Cpe-bp4|Cpeb-4|mCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-164307570-4	chr1	164307462	164307662	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001293313)	promoter-TSS (NM_001293313)	-75.0	NM_001357052	66352.0	Mm.33285	NM_025505	ENSMUSG00000026577	Blzf1	1700030G05Rik|Blzf1l|Golgin-45|Jem-1	basic leucine zipper nuclear factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-77967064-4	chr18	77966965	77967165	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195633, intron 12 of 43)	intron (NM_001195633, intron 12 of 43)	28598.0	NM_001195633	100502841.0	Mm.297782	NM_001195633	ENSMUSG00000039840	Epg5	4732475F16|5430411K18Rik|AI661957|AW456499|mKIAA1632	ectopic P-granules autophagy protein 5 homolog (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-51127872-2	chr14	51127772	51127972	+	575.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360117, intron 1 of 2)	RMER1B|Other|Other	-1165.0	NM_030098	78416.0	Mm.103835	NM_030098	ENSMUSG00000021880	Rnase6	9530043P15Rik|BB119466	ribonuclease, RNase A family, 6	protein-coding	-1.32440223303897	-1.29339468673833	-0.717877708899544	-1.31276353204239	-1.32392690786997	-1.29109028300231	-1.30162128075409	-1.31119997543009	-2.49510383040271	0.470258445164311	1
Merged-chr7-113308903-3	chr7	113308794	113308994	+	903.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357070, intron 18 of 19)	(TG)n|Simple_repeat|Simple_repeat	60445.0	NM_133700	68815.0	Mm.238034	NM_133700	ENSMUSG00000038187	Btbd10	1110056N09Rik|Gmrp1	BTB (POZ) domain containing 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-59181496-4	chr4	59181382	59181582	+	768.395813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8068.0	NM_011673	22234.0	Mm.198803	NM_011673	ENSMUSG00000028381	Ugcg	AU043821|C80537|Epcs21|GlcT-1|Ugcgl	UDP-glucose ceramide glucosyltransferase	protein-coding	2.46938533663992	2.80340468249121	4.07005003716694	3.0846444772782	2.10368470875856	2.94089992175627	1.37937190540288	1.619245182634	-2.03131242829642	0.0163243715859101	0.15408391790918
Merged-chr13-105227189-4	chr13	105227070	105227270	+	920.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360891, intron 5 of 7)	Lx9|LINE|L1	65844.0	NM_027934	71816.0	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	2.93726434288614	1.75154425546653	3.28626866118936	3.90732107597302	3.54108546799203	3.22476369425872	3.39958748481598	3.65171175381988	0.431658967258772	0.517265321433157	0.947641799425091
Merged-chr2-131518518-2	chr2	131518418	131518618	+	654.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177840, intron 3 of 3)	intron (NM_001177840, intron 3 of 3)	26656.0	NM_001177838	228608.0	Mm.136586	NM_145533	ENSMUSG00000027333	Smox	B130066H01Rik|PAO|PAOh1|SMO	spermine oxidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72113507-4	chr6	72113413	72113613	+	997.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011375, intron 1 of 6)	MTC|LTR|ERVL-MaLR	9427.0	NR_045163	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-34586128-2	chr19	34586028	34586228	+	831.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_010501, intron 1 of 1)	intron (NM_010501, intron 1 of 1)	2599.0	NM_010501	15959.0	Mm.426079	NM_010501	ENSMUSG00000074896	Ifit3	Ifi49|P49	interferon-induced protein with tetratricopeptide repeats 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-75089327-2	chr15	75089229	75089429	+	643.5	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	22608.0	NM_001357693	100041546.0	Mm.482110	NM_001099217	ENSMUSG00000022584	Ly6c2	Ly-6C.2|Ly-6C2	lymphocyte antigen 6 complex, locus C2	protein-coding	1.58063170605175	2.12602492021252	1.84093305701408	0.998137149055486	1.89163582056503	1.03747472115459	1.24738064718315	1.90036639917528	-0.364618212515477	0.764715486973488	0.998431161219273
Merged-chr6-134067166-3	chr6	134067071	134067271	+	833.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 2 of 8)	MTD|LTR|ERVL-MaLR	31471.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-103214754-4	chr4	103214627	103214827	+	989.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001356276, exon 1 of 12)	exon (NM_001356276, exon 1 of 12)	449.0	NM_001356276	242585.0	Mm.281800	NM_177732	ENSMUSG00000028521	Slc35d1	AI834976|C330011J09|UGTREL7|mKIAA0260	solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89869776-2	chr3	89869676	89869876	+	965.833374	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001310676, exon 10 of 10)	3' UTR (NM_001310676, exon 10 of 10)	38406.0	NM_172530	214547.0	Mm.225	NM_172530	ENSMUSG00000046280	She	9430022A14	src homology 2 domain-containing transforming protein E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-88593484-2	chr5	88593384	88593584	+	599.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359208, intron 2 of 13)	(CA)n|Simple_repeat|Simple_repeat	9971.0	NM_001359209	52822.0	Mm.270469	NM_027530	ENSMUSG00000029291	Rufy3	2810428M05Rik|6330416M07Rik|AW455998|AW538594|D5Bwg0860e|Ripx|Rpipx	RUN and FYVE domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111431599-2	chr12	111431499	111431699	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_028807)	TTS (NM_028807)	-11062.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-110991750-4	chr12	110991630	110991830	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2668.0	NR_036598	77878.0	Mm.293198	NR_036598	ENSMUSG00000113056	6030440G07Rik	-	RIKEN cDNA 6030440G07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-55023233-4	chr11	55023136	55023336	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_138556, intron 1 of 24)	intron (NR_138556, intron 1 of 24)	10235.0	NR_138556	11749.0	Mm.265347	NM_013472	ENSMUSG00000018340	Anxa6	AW107198|Anx6|AnxVI|Cabm|Camb	annexin A6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-65187203-1	chr13	65187103	65187303	+	774.0	f1_c57bl6.idr	intron (NM_175290, intron 6 of 9)	RLTR26|LTR|ERVK	18513.0	NM_175290	97895.0	Mm.315815	NM_175290	ENSMUSG00000032999	Nlrp4f	C330026N02Rik|C86045|Nalp-kappa|Nalp4f	NLR family, pyrin domain containing 4F	protein-coding	0.750830097774398	-0.0426071720978078	-0.0570821814748567	1.66423804159006	-0.086052888854145	-0.0394377999146246	-0.0538293328952817	-0.066676152126336	-5.00551297082849	0.140516644984846	0.585252964543454
Merged-chr7-3448945-2	chr7	3448847	3449047	+	660.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24285.0	NM_133183	54378.0	Mm.424047	NM_133183	ENSMUSG00000078815	Cacng6	2310033H20Rik	calcium channel, voltage-dependent, gamma subunit 6	protein-coding	3.66937935290407	2.85020274084594	2.62458870475119	2.54929975604761	3.56190430336651	2.87132179443575	2.64548463251832	2.68894794651719	-0.0230361891727659	0.973544676853656	0.998431161219273
Merged-chr6-50303721-4	chr6	50303618	50303818	+	952.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027881, intron 18 of 21)	L1MA8|LINE|L1	-41949.0	NM_018769	54722.0	Mm.248361	NM_018769	ENSMUSG00000029821	Gsdme	2310037D07Rik|4932441K13Rik|Dfna5|Dfna5h|EG14210|Fin15	gasdermin E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-91960163-3	chr5	91960061	91960261	+	924.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026557, intron 1 of 8)	Charlie1a|DNA|hAT-Charlie	2395.0	NR_073442	68098.0	Mm.159453	NM_026557	ENSMUSG00000029397	Rchy1	ARNIP|CHIMP|Pirh2|Zfp363|Znf363	ring finger and CHY zinc finger domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-32895986-2	chr18	32895886	32896086	+	643.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	-15313.0	NR_105779	102465186.0		NR_105779	ENSMUSG00000098252	Mir6361	Gm27612|mmu-mir-6361	microRNA 6361	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-76767800-4	chr16	76767720	76767920	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155453, intron 1 of 3)	intron (NR_155453, intron 1 of 3)	11272.0	NR_155453	102632814.0		NR_155453	ENSMUSG00000109333	Gm30790	Gm45028	predicted gene, 30790	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-87153111-1	chr17	87153011	87153211	+	904.1666869999999	f0_balb.idr	Intergenic	Intergenic	41831.0	NR_046016	399626.0	Mm.396062	NR_046016		C330024C12Rik	-	RIKEN cDNA C330024C12 gene	ncRNA	2.82491627079402	2.70831442517703	3.30852602098285	3.062517405646	3.15301983680083	1.98087791980836	3.33337850208104	2.89622490541066	-0.0961125906225026	0.889104607367562	0.998431161219273
Merged-chr6-121219355-2	chr6	121219255	121219455	+	804.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_017379, intron 1 of 4)	intron (NM_017379, intron 1 of 4)	8621.0	NM_017379	53857.0	Mm.32884	NM_017379	ENSMUSG00000030137	Tuba8	-	tubulin, alpha 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-68241205-4	chr10	68241111	68241311	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023598, intron 3 of 9)	intron (NM_023598, intron 3 of 9)	37515.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-9779075-1	chr4	9778975	9779175	+	540.0	f1_balb.idr	intron (NR_030693, intron 1 of 3)	intron (NR_030693, intron 1 of 3)	8490.0	NR_030693	320152.0	Mm.159946	NR_030693		4930412C18Rik	5730591J02Rik	RIKEN cDNA 4930412C18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-116170279-3	chr3	116170158	116170358	+	698.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-40570.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	3.15320790133639	3.68547920825985	3.32809256260457	2.94251296745201	3.09755695987986	3.55306984303577	3.26125421473237	3.55831285390605	0.126685068843179	0.822702590920181	0.998431161219273
Merged-chr5-29836890-2	chr5	29836790	29836990	+	738.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1VL4|LINE|L1	-100954.0	NR_028426	332993.0	Mm.473746	NR_028426		Gm5129	EG332993	predicted gene 5129	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-102827228-2	chr14	102827128	102827328	+	603.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	155404.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-129263627-4	chr8	129263541	129263741	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_144501)	promoter-TSS (NR_144501)	11.0	NR_144501	102635552.0		NM_001346808		Gm32856	-	predicted gene, 32856	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69966230-2	chr11	69966130	69966330	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001193619, intron 2 of 4)	CpG	809.0	NM_016887	53624.0	Mm.281896	NM_016887	ENSMUSG00000018569	Cldn7	-	claudin 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-21779284-2	chr19	21779184	21779384	+	647.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033759, intron 1 of 23)	intron (NM_001033759, intron 1 of 23)	944.0	NM_031997	83921.0	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-21231910-4	chr14	21231791	21231991	+	859.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134079, intron 4 of 10)	L1M3|LINE|L1	155739.0	NM_001243041	11534.0	Mm.188734	NM_134079	ENSMUSG00000039197	Adk	2310026J05Rik|5033405D03Rik|AI255373|AI987814|Ak	adenosine kinase	protein-coding	3.24068592093213	2.61053542791611	1.90038926107823	2.65836326630868	2.08483411309083	3.3484493150355	1.69261462594197	2.03767852816459	-0.432770633419891	0.617103976750988	0.977517868708383
Merged-chr14-52019701-6	chr14	52019682	52019882	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253694)	promoter-TSS (NM_001253694)	-69.0	NM_001253694	69890.0	Mm.475652	NM_027248	ENSMUSG00000049295	Zfp219	2010302A17Rik|Znf219	zinc finger protein 219	protein-coding	-0.744583320681159	-1.08907322251399	-0.785644459993082	-1.107169678969	-1.10976210705869	-1.08671647804793	-1.09748667004409	-1.10684838342435	-2.59718020795451	0.420837302388055	1
Merged-chr1-182907484-3	chr1	182907382	182907582	+	851.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47306.0	NM_016928	53791.0	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-157613596-2	chr3	157613496	157613696	+	672.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011196, intron 2 of 2)	(A)n|Simple_repeat|Simple_repeat	46704.0	NM_011196	19218.0	Mm.30424	NM_011196	ENSMUSG00000040016	Ptger3	EP3|Pgerep3|Ptgerep3	prostaglandin E receptor 3 (subtype EP3)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-52197324-4	chr14	52197216	52197416	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033618)	promoter-TSS (NM_033618)	-77.0	NM_033618	114741.0	Mm.21662	NM_033618	ENSMUSG00000035726	Supt16	Cdc68|Fact140|Spt16|Supt16h	suppressor of Ty 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-116508160-4	chr3	116508049	116508249	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025517)	promoter-TSS (NM_025517)	26.0	NM_025517	66368.0	Mm.251228	NM_025517	ENSMUSG00000000339	Rtca	2310009A18Rik|AI450277|RPC|Rtcd1	RNA 3'-terminal phosphate cyclase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-155091502-4	chr1	155091410	155091610	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8126.0	NM_010500	15939.0	Mm.12246	NM_010500	ENSMUSG00000056708	Ier5	-	immediate early response 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-108431738-3	chr9	108431591	108431791	+	844.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3209.0	NM_001135198	434438.0	Mm.425598	NM_001135198	ENSMUSG00000047220	Ccdc36	-	coiled-coil domain containing 36	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-80158993-2	chr9	80158893	80159093	+	678.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-6041.0	NM_001039546	17920.0	Mm.4040	NM_008662	ENSMUSG00000033577	Myo6	BC029719|Tlc|sv	myosin VI	protein-coding	-0.514145965783308	-0.504032012521936	-0.507363348239204	-0.224060603221154	-0.258495621699016	-0.503278703682201	-0.506630081737634	-0.000685510777030107	1.47130967371321	0.578847455437315	1
Merged-chr13-34973285-2	chr13	34973185	34973385	+	844.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9476.0	NM_026947	69123.0	Mm.482475	NM_026947	ENSMUSG00000021416	Eci3	1810022C23Rik|Kseg2	enoyl-Coenzyme A delta isomerase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-17796258-4	chr10	17796154	17796354	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138628)	promoter-TSS (NM_138628)	35.0	NM_138628	378431.0	Mm.283493	NM_138628	ENSMUSG00000039891	Txlnb	2310001N14Rik|Mdp77	taxilin beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-24012441-1	chr16	24012341	24012541	+	640.333313	f0_balb.idr	Intergenic	Intergenic	-23589.0	NM_009744	12053.0	Mm.347398	NM_009744	ENSMUSG00000022508	Bcl6	Bcl5	B cell leukemia/lymphoma 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-58413633-1	chr3	58413533	58413733	+	550.0	f1_c57bl6.idr	Intergenic	Intergenic	-1087.0	NM_001081229	72033.0	Mm.218409	NM_001081229	ENSMUSG00000027806	Tsc22d2	1810043J12Rik|5530402M19Rik	TSC22 domain family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96489239-3	chr3	96489124	96489324	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35961.0	NM_027126	69585.0	Mm.171314	NM_027126	ENSMUSG00000038403	Hfe2	2310035L15Rik|5230400G09Rik|AI414844|AI789733|DL-M|HJV|Rgmc|hemojuvelin	hemochromatosis type 2 (juvenile)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-118140376-3	chr10	118140286	118140486	+	876.650024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1401.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	1.83021499937486	1.37302767238694	1.9828958642008	2.0755645636204	2.57692947130026	2.22826078768691	2.94742884585541	2.78541665485409	1.94747414473014	0.0267943313034584	0.219189809303791
Merged-chr17-34356108-4	chr17	34355997	34356197	+	801.299988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_079835, intron 1 of 8)	MTD|LTR|ERVL-MaLR	1275.0	NM_079835	547431.0	Mm.441007	NM_079835	ENSMUSG00000024340	Btnl2	BTL-II|BTLN2|Btl2|Gm315|NG9	butyrophilin-like 2	protein-coding	4.29242306888694	4.2000593817869	3.86128520142869	4.072841000684	3.35431164571786	4.97834483487859	3.34950567532084	3.69734507222581	-0.117947231107007	0.819154326710402	0.998431161219273
Merged-chr18-76325006-1	chr18	76324906	76325106	+	573.0	f1_balb.idr	Intergenic	Intergenic	62561.0	NM_001311070	17126.0	Mm.152699	NM_010754	ENSMUSG00000024563	Smad2	7120426M23Rik|Madh2|Madr2|Smad-2|mMad2	SMAD family member 2	protein-coding	0.625746590351094	1.846399875271	0.664995410227641	0.650579459475898	1.01546873450668	1.34760497518973	2.12061201180631	0.886957542901758	1.17550826493827	0.423094822719299	0.900322118218157
Merged-chr19-5600480-2	chr19	5600380	5600580	+	812.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1393.0	NM_026616	68209.0	Mm.246200	NM_026616	ENSMUSG00000024925	Rnaseh2c	1500026D16Rik|AYP1	ribonuclease H2, subunit C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-57765185-1	chr3	57765085	57765285	+	567.0	f0_balb.idr	intron (NR_130743, intron 2 of 9)	C-rich|Low_complexity|Low_complexity	29128.0	NR_130743	24017.0	Mm.274360	NM_011883	ENSMUSG00000036503	Rnf13	2010001H16Rik|Rzf	ring finger protein 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122900422-4	chr5	122900329	122900529	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013910)	promoter-TSS (NM_013910)	-79.0	NM_013910	30841.0	Mm.86406	NM_013910	ENSMUSG00000029475	Kdm2b	Cxxc2|Fbl10|Fbxl10|Jhdm1b|PCCX2	lysine (K)-specific demethylase 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-69109844-3	chr9	69109728	69109928	+	999.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013646, intron 1 of 10)	intron (NM_013646, intron 1 of 10)	-180013.0	NM_001289916	19883.0	Mm.378450	NM_013646	ENSMUSG00000032238	Rora	9530021D13Rik|Nr1f1|ROR1|ROR2|ROR3|nmf267|sg|staggerer|tmgc26	RAR-related orphan receptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16246154-2	chr7	16246024	16246224	+	931.25	f1_balb.idr|f1_c57bl6.idr	TTS (NM_007577)	TTS (NM_007577)	-1970.0	NM_176912	319430.0	Mm.239570	NM_176912	ENSMUSG00000074361	C5ar2	C5L2|E030029A11Rik|Gpr77	complement component 5a receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-27624276-1	chr15	27624176	27624376	+	557.0	f1_balb.idr	intron (NM_001013792, intron 1 of 6)	intron (NM_001013792, intron 1 of 6)	6417.0	NM_001013792	432940.0	Mm.309164	NM_001013792	ENSMUSG00000046034	Otulin	C79097|Fam105b|m3Sapc|m7-1Sapc	OTU deubiquitinase with linear linkage specificity	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166733101-4	chr2	166733007	166733207	+	997.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19275.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-31139650-4	chr17	31139536	31139736	+	925.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	4646.0	NM_009363	21785.0	Mm.1825	NM_009363	ENSMUSG00000024028	Tff2	SP|mSP	trefoil factor 2 (spasmolytic protein 1)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-28323214-4	chr10	28323118	28323318	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359356, intron 3 of 30)	intron (NM_001359356, intron 3 of 30)	248398.0	NM_001359356	19272.0	Mm.332303	NM_008983	ENSMUSG00000019889	Ptprk	AI853699|PTPk|RPTPkappa	protein tyrosine phosphatase, receptor type, K	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-54652761-1	chr14	54652661	54652861	+	910.0	f1_balb.idr	intron (NM_001085473, intron 8 of 18)	intron (NM_001085473, intron 8 of 18)	924.0	NM_001242605	56215.0	Mm.297078	NM_019567	ENSMUSG00000022185	Acin1	2610036I19Rik|2610510L13Rik|Acinus|Acn|C79325|acinusL|acinusS|mKIAA0670	apoptotic chromatin condensation inducer 1	protein-coding	-1.35914981169748	-1.4788811654986	-1.48870847347744	-1.49678091685108	-1.5090967730776	-1.16749470945895	-1.48648378635949	-1.49533595334674	0.921594974740572	0.790977103014573	1
Merged-chr10-40881648-2	chr10	40881548	40881748	+	561.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027879, intron 1 of 14)	intron (NM_027879, intron 1 of 14)	1495.0	NM_027879	71713.0	Mm.46063	NM_027879	ENSMUSG00000038446	Cdc40	1200003H23Rik|EHB3|PRP17	cell division cycle 40	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-7873785-2	chr9	7873685	7873885	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007464)	promoter-TSS (NM_007464)	-615.0	NM_007464	11796.0	Mm.2026	NM_007464	ENSMUSG00000032000	Birc3	AW107670|Api1|Api2|Birc2|C-IAP2|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF49|cIAP-1|cIAP-2|cIAP1|cIAP2	baculoviral IAP repeat-containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33949666-2	chr16	33949566	33949766	+	856.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_010580)	TTS (NM_010580)	17372.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133092344-2	chr4	133092244	133092444	+	628.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38289.0	NM_153423	242687.0	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	1.15687179933298	0.151492540086201	0.350400012602156	1.04380319114256	0.12685964930078	0.153393626450744	0.144876622693516	0.137521286471226	-4.40153154242095	0.0284231093657621	1
Merged-chr9-25522000-4	chr9	25521823	25522023	+	951.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 2 of 7)	intron (NM_026189, intron 2 of 7)	40326.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-95565742-2	chr10	95565642	95565842	+	754.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1596.0	NM_001358996	71207.0	Mm.24397	NM_027722	ENSMUSG00000020029	Nudt4	4933436C10Rik|DIPP-2|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P	nudix (nucleoside diphosphate linked moiety X)-type motif 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-19968475-4	chr14	19968389	19968589	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285908, intron 1 of 3)	intron (NM_001285908, intron 1 of 3)	8204.0	NM_001285911	14702.0	Mm.41737	NM_010315	ENSMUSG00000043004	Gng2	-	guanine nucleotide binding protein (G protein), gamma 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-83922234-4	chr10	83922126	83922326	+	955.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	178471.0	NR_152790	102637349.0	Mm.402869	NR_152790	ENSMUSG00000111049	Gm34184	-	predicted gene, 34184	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-60283313-7	chr2	60283186	60283386	+	927.357117	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025422, intron 1 of 4)	intron (NM_025422, intron 1 of 4)	1198.0	NM_025422	66205.0	Mm.227281	NM_025422	ENSMUSG00000060703	Cd302	1110055L24Rik|AI159627	CD302 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21909613-4	chr9	21909537	21909737	+	856.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001324531, exon 5 of 5)	3' UTR (NM_001324531, exon 5 of 5)	8546.0	NM_031874	19340.0	Mm.260157	NM_031874	ENSMUSG00000019066	Rab3d	C130057E11Rik	RAB3D, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-32687848-2	chr16	32687748	32687948	+	713.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	14694.0	NM_001289443	51789.0	Mm.251115	NM_016788	ENSMUSG00000022791	Tnk2	Ack|Ack-1|Ack1|Cdgip|Pyk1	tyrosine kinase, non-receptor, 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-43706222-2	chr10	43706147	43706347	+	581.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39911.0	NR_040581	69443.0	Mm.484042	NR_040581	ENSMUSG00000111422	1700027J07Rik	-	RIKEN cDNA 1700027J07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117048286-2	chr8	117048186	117048386	+	999.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029686, intron 17 of 42)	intron (NM_029686, intron 17 of 42)	34163.0	NM_029686	76645.0	Mm.159753	NM_029686	ENSMUSG00000034416	Pkd1l2	1700126L06Rik	polycystic kidney disease 1 like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-121071269-2	chr7	121071169	121071369	+	801.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_030691, intron 1 of 5)	intron (NM_030691, intron 1 of 5)	3261.0	NM_030691	80719.0	Mm.160384	NM_030691	ENSMUSG00000035004	Igsf6	-	immunoglobulin superfamily, member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-86038360-4	chr1	86038240	86038440	+	985.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7523.0	NM_001144993	72792.0	Mm.54981	NM_001144992	ENSMUSG00000026227	2810459M11Rik	-	RIKEN cDNA 2810459M11 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45097684-4	chr7	45097603	45097803	+	969.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357117, intron 4 of 6)	intron (NM_001357117, intron 4 of 6)	-5490.0	NM_001355045	52377.0	Mm.29997	NM_026555	ENSMUSG00000019539	Rcn3	6030455P07Rik|D530026G20Rik|D7Ertd671e|RLP49	reticulocalbin 3, EF-hand calcium binding domain	protein-coding	0.876737640728168	0.926918961180733	1.90043485840573	1.74868628119114	1.66476622328563	1.51862066073532	1.13252555586639	1.41847095221482	-0.0478928582259952	0.970597781850967	0.998431161219273
Merged-chr12-75687699-4	chr12	75687593	75687793	+	985.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	-18156.0	NM_028203	72338.0	Mm.341719	NM_028203	ENSMUSG00000045690	Wdr89	2600001A11Rik	WD repeat domain 89	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-97607332-4	chr13	97607234	97607434	+	982.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47334.0	NR_046157	328314.0	Mm.138047	NR_046157	ENSMUSG00000110235	Gm5086	B230311A21|EG328314	predicted gene 5086	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10033918-2	chr19	10033830	10034030	+	752.166626	f1_balb.idr|f1_c57bl6.idr	intron (NR_153790, intron 9 of 10)	intron (NR_153790, intron 9 of 10)	-7618.0	NM_021890	60527.0	Mm.253875	NM_021890	ENSMUSG00000024664	Fads3	AI464531	fatty acid desaturase 3	protein-coding	1.12973423704517	2.08495223373968	1.08696131831477	0.632524705395717	0.821077267669575	0.667782174939286	1.85029095287433	0.634977409255847	-0.782520583344604	0.596707585622489	0.971586575449917
Merged-chr1-75314567-2	chr1	75314467	75314667	+	864.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110831, intron 8 of 14)	intron (NM_001110831, intron 8 of 14)	2450.0	NM_016878	13437.0	Mm.24680	NM_016878	ENSMUSG00000026209	Dnpep	AA407814	aspartyl aminopeptidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-28592658-2	chr2	28592558	28592758	+	769.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9379.0	NM_001290484	70239.0	Mm.274120	NM_148928	ENSMUSG00000026816	Gtf3c5	2700084A09Rik|TFIIIC63|TFiiiC2-63	general transcription factor IIIC, polypeptide 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-23062202-1	chr1	23062102	23062302	+	579.0	f0_balb.idr	Intergenic	Intergenic	40051.0	NM_025746	66755.0	Mm.431297	NM_025746	ENSMUSG00000073730	4933415F23Rik	-	RIKEN cDNA 4933415F23 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-31037682-2	chr17	31037582	31037782	+	546.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20012.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	-1.8418762459921	-1.8125357239735	-1.82140854000656	-1.82869693527674	-1.56059678980999	-1.8106129477253	-1.81939992894326	-1.82739231600805	1.3620893379502	0.699511506488145	1
Merged-chr15-78880386-2	chr15	78880338	78880538	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145929, intron 1 of 16)	intron (NM_145929, intron 1 of 16)	3248.0	NM_145929	106039.0	Mm.251331	NM_145929	ENSMUSG00000033128	Gga1	4930406E12Rik|AU016030|AW209092	golgi associated, gamma adaptin ear containing, ARF binding protein 1	protein-coding	0.155144745288752	0.928701863002236	0.169461060428354	0.164097951357589	0.156480703669049	0.702197867619707	0.657347757642119	0.341552273223348	0.431474712619258	0.82801096978321	1
Merged-chr6-116643413-2	chr6	116643313	116643513	+	644.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178045, intron 6 of 10)	MIRb|SINE|MIR	2634.0	NR_106010	102466793.0		NR_106010	ENSMUSG00000098334	Mir7043	Gm27776|mmu-mir-7043	microRNA 7043	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107968260-4	chr9	107968186	107968386	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011634, intron 10 of 14)	intron (NM_011634, intron 10 of 14)	-7281.0	NM_023738	74153.0	Mm.277125	NM_023738	ENSMUSG00000032596	Uba7	1300004C08Rik|Ube1l	ubiquitin-like modifier activating enzyme 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-158258883-2	chr2	158258783	158258983	+	832.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356542, intron 1 of 14)	intron (NM_001356542, intron 1 of 14)	642.0	NM_001356542	329547.0	Mm.260883	NM_177850	ENSMUSG00000052922	Bpi	9230105K17Rik|Bpifd1	bactericidal permeablility increasing protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-91688435-2	chr6	91688335	91688535	+	675.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009320, intron 1 of 14)	B1F|SINE|Alu	4368.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-112299877-3	chr7	112299790	112299990	+	972.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001193305, intron 3 of 25)	intron (NM_001193305, intron 3 of 25)	-68418.0	NM_027587	100504195.0	Mm.291129	NM_027587	ENSMUSG00000030771	Micalcl	4921517J23Rik	MICAL C-terminal like	protein-coding	1.94918862289542	1.3262278361909	2.94002741589746	2.52738418168119	2.41231115897525	1.62216305502949	3.1631964126747	1.73647051771534	0.14712170740088	0.879918998524327	0.998431161219273
Merged-chr6-29436965-2	chr6	29436865	29437065	+	985.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081185, intron 1 of 47)	intron (NM_001081185, intron 1 of 47)	3709.0	NM_001311074	68794.0	Mm.39046	NM_026839	ENSMUSG00000068699	Flnc	1110055E19Rik|ABP-280|ABPL|Fln2	filamin C, gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-26963520-4	chr8	26963420	26963620	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13816.0	NM_001101502	353310.0	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-117513225-2	chr5	117513080	117513280	+	702.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001312914, intron 3 of 19)	MIR|SINE|MIR	99178.0	NM_001312914	333050.0	Mm.437947	NM_001034873	ENSMUSG00000061578	Ksr2	-	kinase suppressor of ras 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150605466-1	chr4	150605366	150605566	+	595.0	f1_balb.idr	intron (NM_001085492, intron 12 of 22)	intron (NM_001085492, intron 12 of 22)	46708.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0.920318622954318	1.3391817061438	1.2894752513863	1.3687492597787	0.758679320473335	1.70496608367606	0.987385808365579	1.12079658950533	-0.156330570883777	0.90673702407157	0.998431161219273
Merged-chr7-141540859-4	chr7	141540736	141540936	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001142681)	promoter-TSS (NM_001142681)	-979.0	NM_001142681	68038.0	Mm.245355	NM_026522	ENSMUSG00000025512	Chid1	3110023E09Rik|AI841869	chitinase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-77686009-3	chr9	77685833	77686033	+	946.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49201.0	NM_172925	244923.0	Mm.138238	NM_172925	ENSMUSG00000044938	Klhl31	9830147P19Rik|D930047P17Rik|Kbtbd1	kelch-like 31	protein-coding	1.53108119860844	1.2465789857116	1.34661597320023	0.836210276032427	1.2506839828474	0.861335417659577	1.5930965206018	1.43264401784537	0.188646300231616	0.887612965456822	0.998431161219273
Merged-chr17-46140020-4	chr17	46139919	46140119	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029338, intron 2 of 4)	intron (NM_029338, intron 2 of 4)	4179.0	NM_029338	75564.0	Mm.17993	NM_029338	ENSMUSG00000023966	Rsph9	1700027N10Rik	radial spoke head 9 homolog (Chlamydomonas)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6335598-2	chr19	6335498	6335698	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001168488, exon 2 of 10)	exon (NM_001168488, exon 2 of 10)	559.0	NM_008583	17283.0	Mm.12917	NM_008583	ENSMUSG00000024947	Men1	AW045611	multiple endocrine neoplasia 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127350803-3	chr10	127350684	127350884	+	873.861145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008382, exon 2 of 2)	exon (NM_008382, exon 2 of 2)	1064.0	NM_008382	16326.0	Mm.3510	NM_008382	ENSMUSG00000047492	Inhbe	-	inhibin beta-E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-13099078-3	chr4	13098979	13099179	+	693.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	192242.0	NM_001171801	208820.0	Mm.12057	NM_173746	ENSMUSG00000055963	Triqk	C130086A10|Gm11818	triple QxxK/R motif containing	protein-coding	-0.250792280740806	-0.503825032794322	-0.331296776527512	-0.510481774852009	-0.5145688675864	-0.502976623553684	0.170807472323882	-0.509975991943024	1.0029506502917	0.700357578799956	1
Merged-chr1-194998417-2	chr1	194998317	194998517	+	561.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18982.0	NR_015566	320977.0	Mm.99905	NR_015566	ENSMUSG00000096929	A330023F24Rik	C030002C11Rik	RIKEN cDNA A330023F24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69801097-3	chr11	69801019	69801219	+	854.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010198, intron 1 of 5)	CpG	597.0	NM_001291104	14166.0	Mm.269011	NM_010198	ENSMUSG00000042826	Fgf11	Fgf-11|Fhf-3|Fhf3	fibroblast growth factor 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-80413968-1	chr1	80413868	80414068	+	549.0	f0_balb.idr	Intergenic	Intergenic	-31964.0	NR_040460	72208.0	Mm.396181	NR_040460	ENSMUSG00000101483	1700016L21Rik	CD11c-DTR|DCKO|DTR-GFP|DTR-GRP|Jr3|Tg(Itgax-DTR/EGFP)57Lan	RIKEN cDNA 1700016L21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-22090037-3	chr3	22089960	22090160	+	903.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030732, intron 1 of 15)	intron (NM_030732, intron 1 of 15)	13408.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119269261-3	chr11	119269190	119269390	+	952.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008064, intron 1 of 19)	MER21C|LTR|ERVL	1327.0	NM_008064	14387.0	Mm.4793	NM_008064	ENSMUSG00000025579	Gaa	E430018M07Rik	glucosidase, alpha, acid	protein-coding	3.71700679077211	3.64415294707646	3.95412925468795	2.62038458701375	4.12928514669201	3.75573791353204	4.0427918003598	3.15511923912452	0.370918594662312	0.498064809361377	0.936897994490085
Merged-chr2-160015132-3	chr2	160015028	160015228	+	757.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1525.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-115041533-4	chr14	115041419	115041619	+	866.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2152.0	NR_029785	723905.0		NR_029785	ENSMUSG00000065508	Mir17	Mirn17|mir-17|mmu-mir-17	microRNA 17	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-32742337-4	chr5	32742201	32742401	+	794.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001347332, exon 3 of 9)	5' UTR (NM_001347332, exon 3 of 9)	4041.0	NM_001347332	320951.0	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	-0.889687272287297	-0.878414863436687	-0.884451346784904	-0.731732772128336	-0.752161751022776	-0.539106770648875	-0.71322422607448	-0.88608274455276	1.84647840123795	0.492360264279029	1
Merged-chr1-156036501-4	chr1	156036397	156036597	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001160018)	promoter-TSS (NM_001160018)	-17.0	NM_001160018	208263.0	Mm.211654	NM_144791	ENSMUSG00000026466	Tor1aip1	LAP1|Lap1B	torsin A interacting protein 1	protein-coding	5.17751777341765	5.089726210385	4.97516995712094	4.99557322005832	5.66115968348728	4.07429106608839	5.60172688929786	4.70560392197493	0.125172186053752	0.736803354856975	0.998431161219273
Merged-chr17-6078562-2	chr17	6078462	6078662	+	902.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360148, intron 1 of 15)	intron (NM_001360148, intron 1 of 15)	1177.0	NM_001111017	321007.0	Mm.5548	NM_177311	ENSMUSG00000015659	Serac1	4930511N22Rik|D17Ertd141e	serine active site containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-6444628-4	chr11	6444530	6444730	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347064)	promoter-TSS (NM_001347064)	-187.0	NM_001347064	77605.0	Mm.27624	NM_029938	ENSMUSG00000041126	H2afv	C530002L11Rik|H2a.z-2|H2av|Tg(Wnt1-cre)11Rth|Wnt1-Cre|Wnt1::Cre|Wnt1cre	H2A histone family, member V	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-8761373-2	chr10	8761271	8761471	+	717.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 8 of 19)	B1_Mus1|SINE|Alu	124699.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0.686331140690874	0.1922110104912	0.18459485931799	1.04053647497086	0.170244625230314	0.866768795236913	0.186279934186127	0.179712782858051	-1.06532714916652	0.607343453404879	1
Merged-chr2-165918241-2	chr2	165918141	165918341	+	869.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-33403.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5604064-4	chr19	5603959	5604159	+	891.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362372, intron 10 of 12)	intron (NM_001362372, intron 10 of 12)	2186.0	NM_026616	68209.0	Mm.246200	NM_026616	ENSMUSG00000024925	Rnaseh2c	1500026D16Rik|AYP1	ribonuclease H2, subunit C	protein-coding	3.44459026739599	3.53708916462663	2.56673474892361	3.10941050506354	2.08200305394802	1.61179501354703	3.1391429905166	3.04212676583931	-1.04158658236411	0.168881842771556	0.63531908954007
Merged-chr11-63402930-1	chr11	63402830	63403030	+	635.0	f0_c57.idr	Intergenic	Intergenic	270127.0	NM_001302260	18858.0	Mm.1237	NM_008885	ENSMUSG00000018217	Pmp22	22kDa|Gas-3|HNPP|TRE002|Tr|trembler	peripheral myelin protein 22	protein-coding	-1.50811478453619	-0.99851579554048	-1.48484165847197	-1.49312904261012	-1.50577282675516	-1.47256636097272	-1.48255773576353	-1.49164560481169	-2.24133836997777	0.518237887813808	1
Merged-chr2-167378895-2	chr2	167378783	167378983	+	585.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-29705.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-98869733-5	chr15	98869709	98869909	+	789.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033276, intron 1 of 54)	intron (NM_001033276, intron 1 of 54)	1396.0	NM_001033276	381022.0	Mm.264889	NM_001033276	ENSMUSG00000048154	Kmt2d	ALR|BC032281|BC058659|C430014K11Rik|KMT2B|Mll2|Mll4	lysine (K)-specific methyltransferase 2D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-113908188-4	chr5	113908139	113908339	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011779, intron 1 of 10)	CpG	467.0	NM_011779	23790.0	Mm.260158	NM_011779	ENSMUSG00000004530	Coro1c	AL022675|AW455561|AW548837	coronin, actin binding protein 1C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-36155311-2	chr17	36155211	36155411	+	675.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033517, exon 2 of 4)	non-coding (NR_033517, exon 2 of 4)	10293.0	NR_033517	675325.0	Mm.75890	NR_033517	ENSMUSG00000038311	2410017I17Rik	-	RIKEN cDNA 2410017I17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-63941301-2	chr7	63941198	63941398	+	726.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2383.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	1.76814616467935	2.63796634974497	1.69365753941959	1.12216228942149	1.0734938756989	2.04354727022239	0.901984130940721	0.880268653885659	-1.69161253121433	0.174729929589048	0.64338916082288
Merged-chr6-39378626-1	chr6	39378526	39378726	+	542.0	f1_balb.idr	promoter-TSS (NM_028123)	promoter-TSS (NM_028123)	-919.0	NR_155077	72144.0	Mm.482167	NM_028123	ENSMUSG00000029924	Slc37a3	2610507O21Rik|AU044904	solute carrier family 37 (glycerol-3-phosphate transporter), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118887335-3	chr9	118887228	118887428	+	891.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 12 of 13)	ORR1B2|LTR|ERVL-MaLR	-39208.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-121588120-2	chr10	121588020	121588220	+	578.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001081056, exon 25 of 25)	3' UTR (NM_001081056, exon 25 of 25)	-1326.0	NM_019786	56480.0	Mm.34580	NM_019786	ENSMUSG00000020115	Tbk1	1200008B05Rik|AI462036|AW048562	TANK-binding kinase 1	protein-coding	-0.437007347665466	-0.797191490264241	-0.800211333297501	-0.802535497382973	-0.80581110115169	-0.794868846802553	-0.799545998340427	-0.269727996356238	0.669386369290816	0.825650091045202	1
Merged-chr9-7868208-4	chr9	7868110	7868310	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007464, intron 1 of 8)	intron (NM_007464, intron 1 of 8)	4960.0	NM_007464	11796.0	Mm.2026	NM_007464	ENSMUSG00000032000	Birc3	AW107670|Api1|Api2|Birc2|C-IAP2|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF49|cIAP-1|cIAP-2|cIAP1|cIAP2	baculoviral IAP repeat-containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-80010570-1	chr15	80010470	80010670	+	578.0	f1_balb.idr	intron (NM_011057, intron 1 of 6)	intron (NM_011057, intron 1 of 6)	4238.0	NM_011057	18591.0	Mm.144089	NM_011057	ENSMUSG00000000489	Pdgfb	PDGF-B|Sis	platelet derived growth factor, B polypeptide	protein-coding	1.20544122644514	2.83794121211475	2.45704972002582	0.997966964324484	1.62099967831675	1.65019093343991	3.37602253299619	1.00367648723168	0.324008235622461	0.779424268048937	0.998431161219273
Merged-chr11-103980376-6	chr11	103980346	103980546	+	810.638916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007477, intron 3 of 4)	MER77|LTR|ERVL	13575.0	NM_007477	11841.0	Mm.5061	NM_007477	ENSMUSG00000062421	Arf2	-	ADP-ribosylation factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-107513656-4	chr1	107513556	107513756	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011111, intron 1 of 7)	intron (NM_011111, intron 1 of 7)	2146.0	NM_011111	18788.0	Mm.271870	NM_011111	ENSMUSG00000062345	Serpinb2	PAI-2|Planh2|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-65820087-3	chr3	65819991	65820191	+	936.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001166659, exon 12 of 13)	exon (NM_001166659, exon 12 of 13)	138158.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	1.23564291996187	1.05444759337936	1.69758046381312	1.81363452291906	0.963456849075429	0.829756538705664	0.81539042069996	1.65165320945408	-1.37417179262187	0.312222235586054	0.813683249872461
Merged-chr2-133499051-4	chr2	133498939	133499139	+	874.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53120.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-5856456-4	chr15	5856360	5856560	+	988.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6B|LTR|ERVK	188244.0	NR_155428	105245876.0	Mm.128197	NR_155428		Gm41259	-	predicted gene, 41259	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-118447991-2	chr7	118447891	118448091	+	748.5	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001362179, exon 1 of 8)	5' UTR (NM_001362179, exon 1 of 8)	231.0	NM_001362179	110058.0	Mm.156558	NM_138649	ENSMUSG00000058420	Syt17	Bk|sytXVII	synaptotagmin XVII	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99973206-1	chr15	99973106	99973306	+	1000.0	f0_balb.idr	promoter-TSS (NR_028124)	promoter-TSS (NR_028124)	81.0	NR_028124	70281.0	Mm.484037	NR_028124	ENSMUSG00000100084	2310068J16Rik	-	RIKEN cDNA 2310068J16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-50469277-4	chr17	50469192	50469392	+	914.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40255.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	1.52246048563043	1.85271143605415	1.07230557026265	0.833279454250415	1.00647918407641	1.97144014602257	0.85065529004991	1.62685976440029	0.220664074287525	0.86862539121419	0.998431161219273
Merged-chr8-41368275-4	chr8	41368177	41368377	+	795.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019734, intron 1 of 13)	intron (NM_019734, intron 1 of 13)	6420.0	NM_019734	11886.0	Mm.22547	NM_019734	ENSMUSG00000031591	Asah1	2310081N20Rik|AC|Asah	N-acylsphingosine amidohydrolase 1	protein-coding	2.52598084603227	3.74972590358925	3.82085434892612	2.92217368556385	3.24094636404228	3.62545199689298	3.58471428137384	2.81879577665357	-0.0140858972179829	0.981780613395864	0.998431161219273
Merged-chr3-21936835-4	chr3	21936663	21936863	+	751.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-139889.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-8532361-1	chr11	8532261	8532461	+	966.0	f1_balb.idr	intron (NM_001083587, intron 11 of 30)	intron (NM_001083587, intron 11 of 30)	132174.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0.0839956026864351	-0.172640404885779	-0.177650915213699	-0.181520450765371	-0.186994740264996	0.571914878667857	-0.176545348515771	0.25749076830994	2.29018297924173	0.336239069721482	1
Merged-chr16-25963994-3	chr16	25963853	25964053	+	734.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173379, intron 14 of 14)	MER5B|DNA|hAT-Charlie	141831.0	NM_173379	210530.0	Mm.326869	NM_173379	ENSMUSG00000038168	P3h2	4832416N06|AW553532|Leprel1|Mlat4	prolyl 3-hydroxylase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-178945994-2	chr1	178945894	178946094	+	592.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	416869.0	NM_001161665	269152.0	Mm.129727	NM_177724	ENSMUSG00000026494	Kif26b	4832420M10|BC056349|D230039L06Rik	kinesin family member 26B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-41558689-3	chr4	41558583	41558783	+	881.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027993, intron 1 of 5)	L3|LINE|CR1	10844.0	NM_001159583	71901.0	Mm.39215	NM_027993	ENSMUSG00000028439	Fam219a	2310028H24Rik	family with sequence similarity 219, member A	protein-coding	1.80718602516235	1.99143835408216	1.00628127865843	0.763683838956453	1.36791859195376	1.56748055089679	0.780833769581514	0.766042380926859	-1.12504040338261	0.430010774875516	0.904095509792853
Merged-chr17-72966259-2	chr17	72966159	72966359	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47954.0	NM_029999	77889.0	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-27178362-3	chr14	27178253	27178453	+	983.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289686, intron 2 of 12)	intron (NM_001289686, intron 2 of 12)	34360.0	NM_001289686	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-107334338-3	chr11	107334242	107334442	+	794.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359616, intron 2 of 8)	intron (NM_001359616, intron 2 of 8)	136378.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-86125976-4	chr17	86125882	86126082	+	912.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030133, intron 7 of 20)	intron (NM_030133, intron 7 of 20)	19193.0	NM_030133	78586.0	Mm.146236	NM_030133	ENSMUSG00000024135	Srbd1	AI461933|C85414|D530025C17Rik	S1 RNA binding domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-97076752-3	chr7	97076648	97076848	+	903.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5003.0	NM_001162477	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-17018073-3	chr13	17017964	17018164	+	857.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138654, intron 12 of 13)	Lx5b|LINE|L1	676701.0	NM_138654	192136.0	Mm.364180	NM_138654	ENSMUSG00000055137	Sugct	5033411D12Rik|D17907	succinyl-CoA glutarate-CoA transferase	protein-coding	1.21158866156017	1.51744552915023	1.42663223516315	1.66927213678907	5.5153642443854	5.65269883156159	5.38214244362597	4.25015772038453	7.48993486920787	6.82698768876547e-12	1.8543675066163e-09
Merged-chr1-151338422-4	chr1	151338307	151338507	+	993.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6079.0	NM_001359262	117198.0	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-131244732-2	chr2	131244632	131244832	+	937.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001206382, intron 6 of 7)	intron (NM_001206382, intron 6 of 7)	10669.0	NM_144888	228607.0	Mm.287226	NM_144888	ENSMUSG00000037523	Mavs	D430028G21Rik|IPS-1|Visa|cardif	mitochondrial antiviral signaling protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-41376184-4	chr8	41376104	41376304	+	955.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1507.0	NM_019734	11886.0	Mm.22547	NM_019734	ENSMUSG00000031591	Asah1	2310081N20Rik|AC|Asah	N-acylsphingosine amidohydrolase 1	protein-coding	5.73391786968639	6.00152605199787	5.48252819432756	5.506454458646	4.85040896837296	4.59616412734211	4.44596232652161	4.62860116783807	-1.22692075992367	4.79211894085375e-05	0.00167613883326363
Merged-chr3-145655318-1	chr3	145655218	145655418	+	543.0	f1_balb.idr	Intergenic	Intergenic	-5333.0	NM_010516	16007.0	Mm.1231	NM_010516	ENSMUSG00000028195	Cyr61	AI325051|CCN1|Igfbp10	cysteine rich protein 61	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-64579991-4	chr17	64579911	64580111	+	998.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21638.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-58423567-2	chr1	58423472	58423672	+	997.5	f0_balb.idr|f0_c57.idr	intron (NM_001042634, intron 1 of 12)	CpG	516.0	NR_027854	12747.0	Mm.1761	NM_009905	ENSMUSG00000026034	Clk1	STY	CDC-like kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-155099641-3	chr2	155099594	155099794	+	649.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040634, intron 1 of 2)	intron (NR_040634, intron 1 of 2)	385.0	NR_040634	100504268.0	Mm.410858	NR_040634	ENSMUSG00000087254	2310005A03Rik	-	RIKEN cDNA 2310005A03 gene	ncRNA	0.292308584882905	0.0314223476454047	0.0253071991857169	0.193035942892058	0.969772819520948	0.0327977514910129	0.0266578705280667	0.343262436481083	1.9522065565887	0.347212271638341	1
Merged-chr15-100080652-2	chr15	100080552	100080752	+	717.666687	f1_balb.idr|f1_c57bl6.idr	intron (NR_037311, intron 3 of 3)	intron (NR_037311, intron 3 of 3)	41988.0	NM_001159361	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-125484213-7	chr5	125484070	125484270	+	957.228577	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030210, intron 2 of 17)	B2_Mm1a|SINE|B2	8297.0	NM_030210	78894.0	Mm.431573	NM_030210	ENSMUSG00000029482	Aacs	2210408B16Rik|SUR5	acetoacetyl-CoA synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-75642527-4	chr7	75642416	75642616	+	915.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 8 of 36)	intron (NM_029332, intron 8 of 36)	186982.0	NM_029332	75547.0	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-57654846-2	chr9	57654746	57654946	+	745.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4|SINE|ID	-1215.0	NM_001304761	12988.0	Mm.21974	NM_007783	ENSMUSG00000032312	Csk	AW212630|p50CSK	c-src tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-36631776-4	chr16	36631687	36631887	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019388, intron 1 of 7)	L1MB3|LINE|L1	34290.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-95797368-4	chr15	95797274	95797474	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 1 of 19)	intron (NM_175344, intron 1 of 19)	6531.0	NM_001253813	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-69924243-3	chr12	69924147	69924347	+	708.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178628, intron 2 of 14)	PB1D10|SINE|Alu	-31084.0	NM_201519	399510.0	Mm.291936	NM_201519	ENSMUSG00000034761	Map4k5	4432415E19Rik|GCKR|KHS|MAPKKKK5	mitogen-activated protein kinase kinase kinase kinase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-18108410-4	chr16	18108310	18108510	+	760.729126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19220.0	NM_011172	19125.0	Mm.28456	NM_011172	ENSMUSG00000003526	Prodh	Pro-1|Pro1|Ym24d07	proline dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-86172872-4	chr5	86172755	86172955	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172712)	promoter-TSS (NM_172712)	-112.0	NM_172712	231380.0	Mm.34012	NM_172712	ENSMUSG00000035898	Uba6	4930542H01|5730469D23Rik|AU021846|AW124799|E1-L2|Ube1l2	ubiquitin-like modifier activating enzyme 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-103334558-3	chr13	103334452	103334652	+	869.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175171)	promoter-TSS (NM_175171)	-60.0	NM_175171	328329.0	Mm.202606	NM_175171	ENSMUSG00000034751	Mast4	4930420O11Rik|AI642422|mKIAA0303	microtubule associated serine/threonine kinase family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27733361-2	chr2	27733261	27733461	+	692.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290482, intron 1 of 9)	intron (NM_001290482, intron 1 of 9)	22778.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-66903893-2	chr15	66903793	66903993	+	648.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_018865, intron 1 of 4)	intron (NM_018865, intron 1 of 4)	12500.0	NM_018865	22402.0	Mm.10222	NM_018865	ENSMUSG00000005124	Wisp1	AW146261|CCN4|Elm1	WNT1 inducible signaling pathway protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-11213295-2	chr3	11213195	11213395	+	575.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	631064.0	NR_040751	100038545.0	Mm.388494	NR_040751	ENSMUSG00000104015	Gm10745	-	predicted gene 10745	ncRNA	0.481469248102854	1.5860144259044	1.87135978125676	0.503476140957903	1.54239095943203	0.535983974360436	0.519881372169107	0.505736289188953	-1.42884701896807	0.651555770253119	0.986293985805819
Merged-chr10-94470886-2	chr10	94470786	94470986	+	853.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 2 of 4)	MTC|LTR|ERVL-MaLR	-43971.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-52640334-4	chr6	52640179	52640379	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145567)	promoter-TSS (NM_145567)	21.0	NM_145567	58875.0	Mm.286458	NM_145567	ENSMUSG00000029776	Hibadh	6430402H10Rik|AI265272	3-hydroxyisobutyrate dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-77497736-4	chr11	77497653	77497853	+	877.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004144, intron 1 of 19)	intron (NM_001004144, intron 1 of 19)	4341.0	NM_001004144	216963.0	Mm.290182	NM_001004144	ENSMUSG00000011877	Git1	Cat-1|p95Cat	G protein-coupled receptor kinase-interactor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-64035979-1	chr1	64035879	64036079	+	860.5	f0_balb.idr	intron (NM_033563, intron 3 of 3)	intron (NM_033563, intron 3 of 3)	6522.0	NR_105864	102466760.0		NR_105864	ENSMUSG00000098487	Mir6899	Gm27384|mmu-mir-6899	microRNA 6899	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-128318481-3	chr6	128318376	128318576	+	822.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17663.0	NM_011567	21679.0	Mm.14774	NM_011567	ENSMUSG00000030353	Tead4	ETFR-2|Etfr2|FR-19|Rtef1|TEAD-4|TEF-3|Tcf13r1|Tef3|Tefr|Tefr1|Tefr1a	TEA domain family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180404451-4	chr1	180404336	180404536	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081175, intron 2 of 7)	intron (NM_001081175, intron 2 of 7)	-73887.0	NR_003623	277333.0	Mm.389223	NM_199472		Gm5069	EG277333	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-51451743-4	chr10	51451647	51451847	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28865.0	NM_008147	14727.0	Mm.439661	NM_008147	ENSMUSG00000112023	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-55353535-6	chr3	55353425	55353625	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357475, intron 3 of 16)	intron (NM_001357475, intron 3 of 16)	-108203.0	NM_001195539	13175.0	Mm.393242	NM_019978	ENSMUSG00000027797	Dclk1	1700113D08Rik|2810480F11Rik|AI836758|Click-I|Cpg16|Dcamkl1|Dcl|Dclk|mKIAA0369	doublecortin-like kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-6579857-4	chr15	6579762	6579962	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001278269)	promoter-TSS (NM_001278269)	15.0	NM_011815	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-53374369-4	chr10	53374271	53374471	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001204983, intron 1 of 12)	L2a|LINE|L2	5480.0	NM_001204983	100038725.0	Mm.441403	NM_001204983	ENSMUSG00000038594	Cep85l	Gm9766	centrosomal protein 85-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-71831003-4	chr12	71830914	71831114	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172464)	promoter-TSS (NM_172464)	-54.0	NM_026102	208846.0	Mm.87417	NM_026102	ENSMUSG00000034574	Daam1	-	dishevelled associated activator of morphogenesis 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-74963428-2	chr14	74963328	74963528	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11658.0	NR_046078	100043169.0	Mm.145900	NR_046078	ENSMUSG00000115019	Gm4278	-	predicted gene 4278	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-60211379-3	chr18	60211263	60211463	+	684.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033767)	promoter-TSS (NM_001033767)	-714.0	NM_001033767	240327.0	Mm.357104	NM_001033767	ENSMUSG00000073555	Gm4951	EG240327|Ifgga2	predicted gene 4951	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-149958081-4	chr1	149958063	149958263	+	977.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008869, intron 1 of 17)	intron (NM_008869, intron 1 of 17)	3127.0	NM_008869	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-155779040-2	chr3	155778940	155779140	+	558.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-197314.0	NR_040553	329780.0	Mm.119000	NR_040553	ENSMUSG00000104553	9330178D15Rik	9330178D15	RIKEN cDNA 9330178D15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-149790843-4	chr4	149790759	149790959	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-16592.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-144316719-3	chr1	144316598	144316798	+	829.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-67594.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-102435814-2	chr11	102435714	102435914	+	681.599976	f1_balb.idr|f1_c57bl6.idr	exon (NM_008175, exon 11 of 13)	exon (NM_008175, exon 11 of 13)	5492.0	NM_008175	14824.0	Mm.1568	NM_008175	ENSMUSG00000034708	Grn	Pgrn|epithelin	granulin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-108566954-4	chr9	108566854	108567054	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_023247, exon 1 of 5)	5' UTR (NM_023247, exon 1 of 5)	388.0	NM_023247	66706.0	Mm.29471	NM_023247	ENSMUSG00000070283	Ndufaf3	4733401H18Rik	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-114947564-4	chr4	114947485	114947685	+	993.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21572.0	NM_015758	30923.0	Mm.377122	NM_015758	ENSMUSG00000044518	Foxe3	FREAC8|dyl|rct	forkhead box E3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-3892988-4	chr16	3892906	3893106	+	732.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290689, intron 1 of 5)	intron (NM_001290689, intron 1 of 5)	8387.0	NM_001290689	74763.0	Mm.28403	NM_029090	ENSMUSG00000005982	Naa60	1200013P24Rik|AI315146|HAT4|Nat15|NatF	N(alpha)-acetyltransferase 60, NatF catalytic subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117953112-4	chr10	117953008	117953208	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27649.0	NR_045342	71067.0	Mm.410793	NR_045342	ENSMUSG00000112500	4933411E08Rik	-	RIKEN cDNA 4933411E08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141010657-3	chr7	141010558	141010758	+	908.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025378)	promoter-TSS (NM_025378)	86.0	NM_025378	66141.0	Mm.141021	NM_025378	ENSMUSG00000025492	Ifitm3	1110004C05Rik|Cd225|Cdw217|DSPA2b|Fgls|IP15|mil-1	interferon induced transmembrane protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-51525313-4	chr6	51525211	51525411	+	981.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361581, intron 1 of 6)	intron (NM_001361581, intron 1 of 6)	1051.0	NM_001361580	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122950738-1	chr5	122950638	122950838	+	683.0	f1_balb.idr	intron (NM_001003953, intron 6 of 22)	intron (NM_001003953, intron 6 of 22)	38361.0	NM_001003953	30841.0	Mm.86406	NM_013910	ENSMUSG00000029475	Kdm2b	Cxxc2|Fbl10|Fbxl10|Jhdm1b|PCCX2	lysine (K)-specific demethylase 2B	protein-coding	-2.18243820993087	-2.15538464093652	-2.16356586349869	-2.17028616330028	-2.18053909940952	-2.15361173587851	-2.16171381403791	-2.0403552525549	0.759018020146679	0.829933115115583	1
Merged-chr2-156194352-2	chr2	156194252	156194452	+	804.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	-2295.0	NM_172674	228829.0	Mm.427078	NM_172674	ENSMUSG00000038116	Phf20	6820402O20Rik	PHD finger protein 20	protein-coding	-1.17367364971587	-1.14665061133654	-1.15856004380685	-1.16834280623128	-1.17310571790619	-1.14406978763884	-0.42938571406771	-1.16659169643457	2.89727187181404	0.396361616615464	1
Merged-chr14-44102041-2	chr14	44101941	44102141	+	907.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001012766)	promoter-TSS (NM_001012766)	-613.0	NM_007895	13587.0	Mm.327386	NM_007895	ENSMUSG00000072596	Ear2	EAR-13|EAR-2|ECP|ECP 2|Raf3|Rnase2	eosinophil-associated, ribonuclease A family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100433009-2	chr7	100432900	100433100	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001017985, intron 23 of 32)	intron (NM_001017985, intron 23 of 32)	-39991.0	NM_009464	22229.0	Mm.6254	NM_009464	ENSMUSG00000032942	Ucp3	AI645527|Slc25a9|UCP-3	uncoupling protein 3 (mitochondrial, proton carrier)	protein-coding	2.64844885389781	2.00455450452506	1.07236865354183	1.04491614264749	2.84225096236689	2.71596623916188	1.5899991333842	1.04979980480608	0.817515097268811	0.494317057622888	0.935679785535167
Merged-chr11-49202808-4	chr11	49202689	49202889	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009562)	promoter-TSS (NM_009562)	-711.0	NM_001024846	22720.0	Mm.16650	NM_009562	ENSMUSG00000046311	Zfp62	-	zinc finger protein 62	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46470859-4	chr8	46470757	46470957	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007981)	promoter-TSS (NM_007981)	-180.0	NM_007981	14081.0	Mm.210323	NM_007981	ENSMUSG00000018796	Acsl1	Acas|Acas1|Acs|FACS|Facl2|LACS 1|LACS1	acyl-CoA synthetase long-chain family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-48859223-4	chr11	48859103	48859303	+	745.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12217.0	NM_001355757	15944.0	Mm.29938	NM_008326	ENSMUSG00000046879	Irgm1	Ifggd3|Ifi1|Iigp3|Iipg3|Irgm	immunity-related GTPase family M member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-178350983-4	chr1	178350895	178351095	+	960.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13180.0	NR_149827	51810.0	Mm.86589	NM_016805	ENSMUSG00000039630	Hnrnpu	AA408410|AI256620|AL024194|AL024437|AW557595|C86794|Hnrpu|SAFA|Sp120|hnRNP U	heterogeneous nuclear ribonucleoprotein U	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30198843-4	chr7	30198711	30198911	+	823.354187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3658.0	NM_009795	12336.0	Mm.439782	NM_009795	ENSMUSG00000001794	Capns1	Capa-4|Capa4|Capn4|Cdps|Css1|D7Ertd146e	calpain, small subunit 1	protein-coding	1.43724448975393	0.639454992068201	0.974389112723036	0.7972954798426	1.30214993948885	0.641628789377782	0.982733332379182	0.950090178794993	-0.0656048181029691	0.9649629024665	0.998431161219273
Merged-chr17-35915755-4	chr17	35915653	35915853	+	837.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361455, intron 1 of 5)	intron (NM_001361455, intron 1 of 5)	687.0	NM_001361455	66973.0	Mm.29484	NM_025878	ENSMUSG00000024436	Mrps18b	2400002C15Rik|MRP-S18-2|S18mt-b	mitochondrial ribosomal protein S18B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-9780345-4	chr4	9780224	9780424	+	821.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030693, intron 1 of 3)	intron (NR_030693, intron 1 of 3)	9739.0	NR_030693	320152.0	Mm.159946	NR_030693		4930412C18Rik	5730591J02Rik	RIKEN cDNA 4930412C18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-31939323-1	chr18	31939223	31939423	+	755.5	f0_balb.idr	intron (NM_144862, intron 1 of 9)	CpG	7816.0	NM_144862	225341.0	Mm.24551	NM_144862	ENSMUSG00000024395	Lims2	PINCH2	LIM and senescent cell antigen like domains 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-109564760-3	chr4	109564638	109564838	+	734.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33441.0	NM_026291	67646.0	Mm.45820	NM_026291	ENSMUSG00000060491	4930522H14Rik	1700007J23Rik	RIKEN cDNA 4930522H14 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-79228190-4	chr2	79228100	79228300	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27226.0	NM_010576	16401.0	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-78792635-4	chr12	78792538	78792738	+	757.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019579, intron 1 of 14)	MTD|LTR|ERVL-MaLR	43691.0	NM_019579	56217.0	Mm.425777	NM_019579	ENSMUSG00000021112	Mpp5	3830420B02Rik|AI255216|AI644496|Pals1	membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-142394814-4	chr5	142394718	142394918	+	904.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC|LINE|L1	-6679.0	NM_199068	17425.0	Mm.24214	NM_010812	ENSMUSG00000056493	Foxk1	A630048H08Rik|AI463295|Gm10868|Mnf	forkhead box K1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-75400952-4	chr4	75400854	75401054	+	998.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR44A|LTR|ERVK	-122662.0	NM_025849	66928.0	Mm.24332	NM_025849	ENSMUSG00000028398	Dmac1	1700027K24Rik|3110001D03Rik|Tmem261	distal membrane arm assembly complex 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-49203978-2	chr13	49203878	49204078	+	981.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_026738, exon 4 of 6)	exon (NM_026738, exon 4 of 6)	12048.0	NM_026738	68480.0	Mm.3336	NM_026738	ENSMUSG00000037960	Card19	1110007C09Rik|AI851695|Bincard	caspase recruitment domain family, member 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-9056245-4	chr5	9056160	9056360	+	769.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44477.0	NM_001081029	652925.0	Mm.439954	NM_001081029	ENSMUSG00000079659	Tmem243	4930420K17Rik|E030031F02Rik	transmembrane protein 243, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-134511013-4	chr4	134510916	134511116	+	978.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081099)	promoter-TSS (NM_001081099)	17.0	NM_001081099	69885.0	Mm.141592	NM_001081099	ENSMUSG00000078521	Aunip	2610002D18Rik|Clhc1	aurora kinase A and ninein interacting protein	protein-coding	5.80956361090487	5.6076450194696	4.94962781339763	5.40057994419377	5.149695596021	4.65434485775584	4.66714273090696	4.80437656572709	-0.748827665507806	0.0192490403044984	0.17518637972491
Merged-chr3-59210931-4	chr3	59210810	59211010	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028808)	promoter-TSS (NM_028808)	-28.0	NM_028808	74191.0	Mm.90067	NM_028808	ENSMUSG00000036362	P2ry13	2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174	purinergic receptor P2Y, G-protein coupled 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-36967337-4	chr15	36967186	36967386	+	639.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40116.0	NM_026521	68036.0	Mm.371631	NM_026521	ENSMUSG00000062397	Zfp706	3110006P09Rik|AA793007|AW536850|C77232|Znf706	zinc finger protein 706	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-96639815-2	chr15	96639715	96639915	+	744.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166458, intron 1 of 15)	intron (NM_001166458, intron 1 of 15)	2147.0	NM_134086	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127731587-3	chr10	127731466	127731666	+	762.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001199971, exon 8 of 8)	3' UTR (NM_001199971, exon 8 of 8)	6174.0	NM_009312	21334.0	Mm.2374	NM_009312	ENSMUSG00000025400	Tac2	PPT-B|Tac3	tachykinin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-95106163-4	chr4	95106065	95106265	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53943.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120630641-4	chr11	120630540	120630740	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010756, intron 1 of 2)	intron (NM_010756, intron 1 of 2)	2907.0	NM_010756	17134.0	Mm.268010	NM_010756	ENSMUSG00000051510	Mafg	AA545192|C630022N07Rik	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein G (avian)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-9670107-2	chr13	9670007	9670207	+	868.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	93703.0	NM_001347471	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115143784-3	chr11	115143659	115143859	+	652.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163753, intron 1 of 8)	B1_Mur4|SINE|Alu	-9767.0	NM_145634	246746.0	Mm.277387	NM_145634	ENSMUSG00000047798	Cd300lf	CLIM1|CLM-1|CLM1|Digr2|F730004D16Rik|IREM1|IgSF13|LMIR3|Pigr3	CD300 molecule like family member F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-103269496-1	chr10	103269396	103269596	+	591.0	f1_balb.idr	Intergenic	MTC|LTR|ERVL-MaLR	-33174.0	NM_001361058	74978.0	Mm.483817	NM_029134	ENSMUSG00000019892	Lrriq1	4930503E15Rik|Gm1557	leucine-rich repeats and IQ motif containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-79816200-2	chr9	79816100	79816300	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357352, intron 5 of 5)	intron (NM_001357352, intron 5 of 5)	14782.0	NM_001357354	70598.0	Mm.23049	NM_001081243	ENSMUSG00000034898	Filip1	5730485H21Rik|AI843021	filamin A interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-134688545-2	chr4	134688445	134688645	+	848.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_207237, intron 1 of 11)	RMER4B|LTR|ERVK	15745.0	NM_207237	230815.0	Mm.18905	NM_207237	ENSMUSG00000037306	Man1c1	AI593348	mannosidase, alpha, class 1C, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-88204342-4	chr11	88204242	88204442	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_111902)	promoter-TSS (NR_111902)	-46.0	NM_024174	64656.0	Mm.168680	NM_024174	ENSMUSG00000023723	Mrps23	D11Bwg1153e|MRP-S23|Rpms23|S23mt	mitochondrial ribosomal protein S23	protein-coding	5.22609233346727	5.4768054306548	4.43415639608169	5.164165815437	4.87782105839301	3.64936333430727	4.94524762302547	5.27396714455647	-0.370820058249206	0.342685962894629	0.843585797799349
Merged-chr15-15504796-2	chr15	15504696	15504896	+	891.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2A|LINE|L1	-1273305.0	NM_009869	12565.0	Mm.439758	NM_009869	ENSMUSG00000025370	Cdh9	-	cadherin 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-11462301-4	chr8	11462276	11462476	+	863.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011227, intron 1 of 1)	intron (NM_011227, intron 1 of 1)	-15553.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-67267569-3	chr6	67267460	67267660	+	991.8666380000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113565, intron 1 of 7)	CpG	581.0	NM_025814	66870.0	Mm.240490	NM_025814	ENSMUSG00000036371	Serbp1	1200009K13Rik|9330147J08Rik|AL022786|Pairbp1	serpine1 mRNA binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-52222251-2	chr6	52222151	52222351	+	644.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_010456)	TTS (NM_010456)	-3678.0	NM_010455	15404.0	Mm.294826	NM_010455	ENSMUSG00000038236	Hoxa7	AV118143|Hox-1.1|M6	homeobox A7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-57144975-2	chr9	57144875	57145075	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001357409, exon 5 of 11)	exon (NM_001357409, exon 5 of 11)	3330.0	NM_028347	72774.0	Mm.35749	NM_028347	ENSMUSG00000032298	Neil1	2810450N13Rik|NEH1|Nei1	nei endonuclease VIII-like 1 (E. coli)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-44557207-2	chr2	44557107	44557307	+	821.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	304415.0	NM_172662	227835.0	Mm.314312	NM_172662	ENSMUSG00000036890	Gtdc1	E330008O22Rik	glycosyltransferase-like domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-65176369-3	chr1	65176225	65176425	+	884.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111320, intron 1 of 8)	RMER15|LTR|ERVL	2817.0	NM_010497	15926.0	Mm.9925	NM_010497	ENSMUSG00000025950	Idh1	AI314845|AI788952|E030024J03Rik|Id-1|Idh-1|Idpc	isocitrate dehydrogenase 1 (NADP+), soluble	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-99029054-4	chr13	99028954	99029154	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44489.0	NM_027064	69382.0	Mm.45466	NM_027064	ENSMUSG00000045022	1700024P04Rik	H2bl1|Subh2bv	RIKEN cDNA 1700024P04 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101317623-2	chr15	101317523	101317723	+	714.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24411.0	NR_033803	77717.0	Mm.391998	NR_033803	ENSMUSG00000075408	6030408B16Rik	AI225877	RIKEN cDNA 6030408B16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-30591666-6	chr14	30591629	30591829	+	897.8110960000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18581.0	NM_001310682	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-98266353-4	chr12	98266245	98266445	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2290.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-64613486-2	chr17	64613386	64613586	+	775.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008549, intron 1 of 21)	B3A|SINE|B2	11837.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-137820909-4	chr5	137820784	137820984	+	799.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360023, intron 16 of 16)	Lx8b|LINE|L1	15394.0	NM_153510	231805.0	Mm.379385	NM_153510	ENSMUSG00000046245	Pilra	AV021745|FDF03	paired immunoglobin-like type 2 receptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-25083321-4	chr8	25083225	25083425	+	871.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031257, intron 2 of 11)	intron (NM_031257, intron 2 of 11)	18486.0	NM_031257	83436.0	Mm.261122	NM_031257	ENSMUSG00000031557	Plekha2	6430512N22Rik|AI851530|AU041791|TAPP2|W91773	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-58540256-2	chr13	58540156	58540356	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	70621.0	NM_022317	114304.0	Mm.18188	NM_022317	ENSMUSG00000021553	Slc28a3	Cnt3	solute carrier family 28 (sodium-coupled nucleoside transporter), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69779141-2	chr11	69779041	69779241	+	764.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_029348, exon 4 of 4)	exon (NM_029348, exon 4 of 4)	13229.0	NM_029348	75580.0	Mm.426361	NM_029348	ENSMUSG00000018750	Zbtb4	2310026P19Rik|9230111I22Rik|mKIAA1538	zinc finger and BTB domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85332311-1	chr12	85332211	85332411	+	559.0	f1_c57bl6.idr	intron (NM_145138, intron 5 of 21)	B3A|SINE|B2	7051.0	NM_145138	217718.0	Mm.29071	NM_145138	ENSMUSG00000034290	Nek9	C130021H08Rik	NIMA (never in mitosis gene a)-related expressed kinase 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-61288998-2	chr14	61288898	61289098	+	716.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	16336.0	NR_033788	67355.0	Mm.193728	NR_033788	ENSMUSG00000101505	1700109G14Rik	1700126G13Rik	RIKEN cDNA 1700109G14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-97778482-6	chr4	97778403	97778603	+	954.444458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010905, intron 1 of 10)	CpG	877.0	NM_010905	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3236459-3	chr12	3236352	3236552	+	850.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015551, intron 1 of 6)	intron (NR_015551, intron 1 of 6)	661.0	NR_015551	74173.0	Mm.309774	NM_028796	ENSMUSG00000079179	Rab10os	1700012B15Rik|1810036A22Rik	RAB10, member RAS oncogene family, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32234226-2	chr2	32234126	32234326	+	609.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001159634, exon 32 of 32)	3' UTR (NM_001159634, exon 32 of 32)	-2457.0	NM_145145	99011.0	Mm.31192	NM_145145	ENSMUSG00000039254	Pomt1	AI505244	protein-O-mannosyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-82906192-4	chr15	82906094	82906294	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_045068)	TTS (NR_045068)	5940.0	NM_013836	21411.0	Mm.252156	NM_013836	ENSMUSG00000041852	Tcf20	2810438H08Rik|SPBP|mKIAA0292	transcription factor 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-60541260-4	chr3	60541151	60541351	+	925.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310514, intron 2 of 8)	intron (NM_001310514, intron 2 of 8)	40072.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-47781761-4	chr6	47781663	47781863	+	938.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21889.0	NR_030485	735289.0		NR_030485	ENSMUSG00000076060	Mir704	Mirn704|mir-704|mmu-mir-704	microRNA 704	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-57548116-3	chr16	57548002	57548202	+	903.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 4 of 4)	intron (NM_001040397, intron 4 of 4)	-1140.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-14722053-2	chr9	14721953	14722153	+	587.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_177905, intron 8 of 18)	intron (NM_177905, intron 8 of 18)	18680.0	NM_177905	330890.0	Mm.334969	NM_177905	ENSMUSG00000036912	Piwil4	9230101H05Rik|Miwi2	piwi-like RNA-mediated gene silencing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127326202-2	chr10	127326102	127326302	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359657, intron 2 of 11)	intron (NM_001359657, intron 2 of 11)	560.0	NM_001359657	216445.0	Mm.227198	NM_146011	ENSMUSG00000040345	Arhgap9	AU043488	Rho GTPase activating protein 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166445235-2	chr2	166445135	166445335	+	804.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2216.0	NR_015558	319684.0	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-46775444-3	chr11	46775402	46775602	+	828.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_134248, exon 7 of 8)	exon (NM_134248, exon 7 of 8)	24334.0	NM_134248	171283.0	Mm.17771	NM_134248	ENSMUSG00000040405	Havcr1	AI503787|KIM-1|TIM-1|Tim1|Timd1	hepatitis A virus cellular receptor 1	protein-coding	0.383636306709494	1.34480918030437	0.405523009539587	0.592577118497998	1.30436001259099	0.99359546638296	0.40783276232871	0.39881022189938	0.374412100386076	0.834224152843238	0.998431161219273
Merged-chr12-13491930-3	chr12	13491844	13492044	+	892.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027706, intron 44 of 51)	intron (NM_027706, intron 44 of 51)	135702.0	NR_136761	102639399.0	Mm.122052	NR_136761	ENSMUSG00000113666	Gm35725	-	predicted gene, 35725	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-110764959-2	chr3	110764859	110765059	+	641.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4A|LINE|L1	-513960.0	NR_024139	99890.0	Mm.36115	NM_178891	ENSMUSG00000049300	Prmt6	AW124876|BB233495|Hrmt1l6	protein arginine N-methyltransferase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27028602-4	chr17	27028499	27028699	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007523)	promoter-TSS (NM_007523)	28.0	NM_007523	12018.0	Mm.2443	NM_007523	ENSMUSG00000057789	Bak1	Bak|N-BAK1|N-Bak	BCL2-antagonist/killer 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-55601765-2	chr13	55601665	55601865	+	568.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146045, intron 1 of 5)	intron (NM_146045, intron 1 of 5)	1869.0	NM_001311137	218271.0	Mm.139825	NM_146045	ENSMUSG00000021504	B4galt7	-	xylosylprotein beta1,4-galactosyltransferase, polypeptide 7 (galactosyltransferase I)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-6793455-2	chr4	6793355	6793555	+	632.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145711, intron 3 of 8)	B3|SINE|B2	197268.0	NM_145711	252838.0	Mm.435828	NM_145711	ENSMUSG00000041272	Tox	1700007F02Rik	thymocyte selection-associated high mobility group box	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-126812644-2	chr4	126812544	126812744	+	545.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001035525, intron 3 of 23)	intron (NM_001035525, intron 3 of 23)	58874.0	NM_001035526	100317.0	Mm.206206	NM_133886	ENSMUSG00000028830	AU040320	A730047D20Rik|AAVR|Kiaa0319l	expressed sequence AU040320	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99156148-2	chr7	99156048	99156248	+	698.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_026384, intron 7 of 7)	intron (NM_026384, intron 7 of 7)	-15004.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-77282986-4	chr10	77282893	77283093	+	879.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23693.0	NM_030262	80294.0	Mm.203556	NM_030262	ENSMUSG00000020260	Pofut2	2310011G23Rik|AI256847|BC003494|C21orf80|FUT13	protein O-fucosyltransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70303093-3	chr14	70302994	70303194	+	644.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001135152)	TTS (NM_001135152)	-13597.0	NM_001304992	19057.0	Mm.439683	NM_008915	ENSMUSG00000022092	Ppp3cc	Calnc|PP2BA gamma	protein phosphatase 3, catalytic subunit, gamma isoform	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-5941391-4	chr18	5941299	5941499	+	916.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	194699.0	NM_029277	75415.0	Mm.239675	NM_029277	ENSMUSG00000041225	Arhgap12	2810011M08Rik	Rho GTPase activating protein 12	protein-coding	-0.0702555408982678	-0.593329372121892	-0.596527600254607	-0.598984578517933	-0.602440791879509	-0.59260633095814	-0.423943785366073	-0.305893426926868	-0.421596256790719	0.876208636104264	1
Merged-chr11-118981167-4	chr11	118980989	118981189	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7092.0	NM_001359574	238011.0	Mm.244114	NM_001030291	ENSMUSG00000046697	Enpp7	Alk-SMase|Gm254	ectonucleotide pyrophosphatase/phosphodiesterase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-27268964-4	chr3	27268835	27269035	+	922.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15-int|LTR|ERVL	-48142.0	NM_009425	22035.0	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80679751-3	chr10	80679647	80679847	+	869.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3454.0	NM_021462	17347.0	Mm.42126	NM_021462	ENSMUSG00000020190	Mknk2	2010016G11Rik|Gprk7|Mnk2	MAP kinase-interacting serine/threonine kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-25158444-1	chr9	25158344	25158544	+	766.0	f0_balb.idr	Intergenic	L2c|LINE|L2	-6663.0	NM_020586	80517.0	Mm.142843	NM_020586	ENSMUSG00000008429	Herpud2	5031400M07Rik|AB041580	HERPUD family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-113677571-4	chr6	113677469	113677669	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 7 of 11)	intron (NM_001113553, intron 7 of 11)	-19481.0	NM_001347356	381801.0	Mm.333322	NM_001033463	ENSMUSG00000056952	Tatdn2	AI646012|mKIAA0218	TatD DNase domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-58070274-2	chr14	58070174	58070374	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2412.0	NM_013518	14180.0	Mm.8846	NM_013518	ENSMUSG00000021974	Fgf9	Eks	fibroblast growth factor 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-122955806-4	chr7	122955705	122955905	+	998.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	14654.0	NR_045614	73951.0	Mm.389936	NR_045614		4930413G21Rik	-	RIKEN cDNA 4930413G21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-73233628-4	chr8	73233518	73233718	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010687, intron 1 of 14)	B4|SINE|B4	119922.0	NM_001317391	16795.0	Mm.324371	NM_010687	ENSMUSG00000004383	Large1	BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd	LARGE xylosyl- and glucuronyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122414870-2	chr8	122414775	122414975	+	683.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001029993, intron 17 of 18)	MTC|LTR|ERVL-MaLR	-7145.0	NM_145834	234836.0	Mm.222808	NM_145834	ENSMUSG00000046108	Il17c	IL-17C	interleukin 17C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129058165-3	chr2	129058063	129058263	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7784.0	NM_027192	69737.0	Mm.33909	NM_027192	ENSMUSG00000027394	Ttl	2410003M22Rik|2700049H19Rik|AI848570	tubulin tyrosine ligase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-54685353-3	chr13	54685268	54685468	+	729.194458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027396, intron 1 of 10)	intron (NR_027396, intron 1 of 10)	2440.0	NM_001146025	105239.0	Mm.25366	NM_134064	ENSMUSG00000034928	Rnf44	AI854545|mKIAA1100	ring finger protein 44	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-108808378-4	chr9	108808321	108808521	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030729)	promoter-TSS (NM_030729)	41.0	NM_030729	80987.0	Mm.192416	NM_030729	ENSMUSG00000032598	Nckipsd	AF3P21|DIP1|ORF1|SPIN90|WASLBP|WISH|Wasbp	NCK interacting protein with SH3 domain	protein-coding	5.11094620349251	4.25416126951896	4.24213830814567	5.04281527059297	4.35611299982635	4.41467603637703	3.75613783094088	4.4677694109291	-0.580579209257247	0.155755008687342	0.610928767307068
Merged-chr2-117120721-6	chr2	117120597	117120797	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033524)	promoter-TSS (NM_033524)	-374.0	NM_001277256	114715.0	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-40491575-4	chr8	40491476	40491676	+	934.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011135)	TTS (NM_011135)	18903.0	NM_001361938	18983.0	Mm.272551	NM_011135	ENSMUSG00000031601	Cnot7	AU022737|CAF-1|Caf1|Pop2	CCR4-NOT transcription complex, subunit 7	protein-coding	2.36961718214681	2.22377050785445	1.74706626308394	2.08836203479064	3.15535457073796	2.79959311533424	2.90365203979055	3.12244830421348	1.83143064339506	0.0154296453828901	0.148061469401692
Merged-chr18-68180467-2	chr18	68180367	68180567	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172631, intron 3 of 5)	MTC|LTR|ERVL-MaLR	-47479.0	NM_001357444	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-181678973-4	chr2	181678882	181679082	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1315.0	NM_001356343	21400.0	Mm.24245	NM_009326	ENSMUSG00000059540	Tcea2	AI326274|S-II-T1|SII-T1|Tceat	transcription elongation factor A (SII), 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-73950280-4	chr17	73950183	73950383	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011723)	promoter-TSS (NM_011723)	-87.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	5.39153517679157	5.69957989187365	5.19434290737976	5.53625776819999	5.5822237800409	5.7621229289901	6.03831678736247	5.37278522184718	0.273462531103484	0.315349598850236	0.817980640376335
Merged-chr17-80597757-2	chr17	80597657	80597857	+	996.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360278, intron 28 of 33)	intron (NM_001360278, intron 28 of 33)	-19944.0	NM_001360144	381113.0	Mm.329216	NM_001033443	ENSMUSG00000033966	Cdkl4	AU067824|Gm942	cyclin-dependent kinase-like 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-48263353-2	chr9	48263268	48263468	+	566.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	77530.0	NM_030069	78252.0	Mm.31626	NM_030069	ENSMUSG00000032028	Nxpe2	4432416J03Rik|AI323362|Fam55b	neurexophilin and PC-esterase domain family, member 2	protein-coding	0.639588754965661	1.47195021174329	0.675741212356863	1.35840275834735	0.643047815156248	1.61731187485809	0.679490660938936	2.01058953653722	0.987064984066279	0.526053250970909	0.948635306385116
Merged-chr2-60289733-3	chr2	60289674	60289874	+	986.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5290.0	NM_001290660	66205.0	Mm.227281	NM_025422	ENSMUSG00000060703	Cd302	1110055L24Rik|AI159627	CD302 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-62448247-2	chr10	62448147	62448347	+	806.166687	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027926)	promoter-TSS (NR_027926)	-913.0	NR_027926	74706.0	Mm.402550	NR_027926	ENSMUSG00000097129	4930507D05Rik	-	RIKEN cDNA 4930507D05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141615629-2	chr4	141615492	141615692	+	722.875	f1_balb.idr|f1_c57bl6.idr	TTS (NR_033566)	TTS (NR_033566)	1222.0	NR_033566	100165.0	Mm.439819	NR_033566	ENSMUSG00000073731	AI507597	-	expressed sequence AI507597	ncRNA	0.541795648800158	1.76140246948407	1.09548514056041	0.365306548080999	0.350561405336879	1.02175704812961	0.37836134570523	0.367099757417195	-2.2829143039644	0.19175790057791	0.670110084796242
Merged-chr3-122151057-3	chr3	122150958	122151158	+	634.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007378, intron 36 of 49)	intron (NM_007378, intron 36 of 49)	-94499.0	NM_008129	14630.0	Mm.292676	NM_008129	ENSMUSG00000028124	Gclm	AI649393|Gcmc|Glclr	glutamate-cysteine ligase, modifier subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117116972-4	chr11	117116875	117117075	+	854.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166507, intron 1 of 16)	intron (NM_001166507, intron 1 of 16)	1803.0	NM_001166506	74136.0	Mm.272312	NM_028777	ENSMUSG00000020823	Sec14l1	1200017E04Rik|2810012L19Rik|Naa-35	SEC14-like lipid binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-121997984-1	chr14	121997884	121998084	+	757.0	f1_balb.idr	intron (NM_026861, intron 7 of 8)	intron (NM_026861, intron 7 of 8)	-32791.0	NM_183031	321019.0	Mm.265618	NM_183031	ENSMUSG00000051212	Gpr183	Ebi2	G protein-coupled receptor 183	protein-coding	1.30793827421325	0.460771347883492	0.450821605862321	0.443058731563527	1.39395843015311	0.866868201346951	0.453026708965331	0.794002984508655	0.85102787078868	0.629353332318827	1
Merged-chr2-127435256-2	chr2	127435156	127435356	+	695.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_029629)	TTS (NM_029629)	9309.0	NM_029629	68126.0	Mm.288676	NM_029629	ENSMUSG00000027371	Fahd2a	1500003K14Rik|B430104H02Rik|Cgi-105|Fahd2	fumarylacetoacetate hydrolase domain containing 2A	protein-coding	1.92150801530672	0.782372670651297	1.33607930546777	0.75311814354798	0.928086161183771	1.54838378251609	0.769668279822489	1.83553403279527	0.150328503444297	0.917357570112534	0.998431161219273
Merged-chr9-54501241-2	chr9	54501141	54501341	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172771, intron 1 of 43)	CpG	385.0	NM_172771	235380.0	Mm.93636	NM_172771	ENSMUSG00000041268	Dmxl2	6330586A12|6430411K14Rik|E130119P06Rik|mKIAA0856	Dmx-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-97580929-4	chr15	97580818	97581018	+	987.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	124904.0	NM_028003	71919.0	Mm.12255	NM_028003	ENSMUSG00000022466	Rpap3	2310042P20Rik|D15Ertd682e	RNA polymerase II associated protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-92943162-3	chr6	92943068	92943268	+	835.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015530, intron 1 of 2)	CpG	2586.0	NR_015530	330385.0	Mm.483472	NR_015530	ENSMUSG00000097462	9530026P05Rik	B430306B02	RIKEN cDNA 9530026P05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-31834219-2	chr17	31834119	31834319	+	922.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21585.0	NM_010831	17691.0	Mm.290941	NM_010831	ENSMUSG00000024042	Sik1	Hrt-20|Msk|Sik|Sik-1|Snf1lk	salt inducible kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-51805305-4	chr1	51805214	51805414	+	849.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010863, intron 7 of 29)	intron (NM_010863, intron 7 of 29)	110664.0	NM_001161817	17912.0	Mm.3390	NM_010863	ENSMUSG00000018417	Myo1b	AA406997|MIH-L|MMIa	myosin IB	protein-coding	1.85538423222528	1.05395587034758	1.64082255532796	1.01143574270066	1.96714815969979	1.7148336210355	2.62405141854359	1.43885402135668	1.63541609249165	0.157114549882733	0.613626422361012
Merged-chr2-6479175-4	chr2	6479062	6479262	+	955.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	126426.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-129534244-4	chr6	129534153	129534353	+	892.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045270)	promoter-TSS (NR_045270)	-969.0	NR_045270	100504641.0	Mm.398286	NR_045270	ENSMUSG00000097675	1700101I11Rik	-	RIKEN cDNA 1700101I11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-148073322-3	chr2	148073224	148073424	+	775.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26355.0	NM_010446	15376.0	Mm.938	NM_010446	ENSMUSG00000037025	Foxa2	HNF3-beta|HNF3beta|Hnf-3b|Hnf3b|Tcf-3b|Tcf3b	forkhead box A2	protein-coding	1.73971312438963	1.18242459351736	1.59441514699009	1.54757295367555	1.23876357918099	1.78661553086872	1.33121632106161	0.936887881183352	-0.624527867087361	0.607363304711638	0.974576632476413
Merged-chr3-27202945-4	chr3	27202859	27203059	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 1 of 4)	intron (NM_178772, intron 1 of 4)	19955.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119228495-4	chr11	119228390	119228590	+	991.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172443)	promoter-TSS (NM_172443)	9.0	NM_001347625	207592.0	Mm.205263	NM_172443	ENSMUSG00000039976	Tbc1d16	B930087K01|BC026530|Tcd1d16	TBC1 domain family, member 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81568806-4	chr15	81568714	81568914	+	927.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17400.0	NM_177821	328572.0	Mm.258397	NM_177821	ENSMUSG00000055024	Ep300	A430090G16|A730011L11|KAT3B|p300|p300 HAT	E1A binding protein p300	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133748418-2	chr4	133748331	133748531	+	723.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080819, intron 1 of 19)	intron (NM_001080819, intron 1 of 19)	5180.0	NM_001080819	93760.0	Mm.22478	NM_001080819	ENSMUSG00000007880	Arid1a	1110030E03Rik|BAF250a|Osa1|Smarcf1	AT rich interactive domain 1A (SWI-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-121122670-3	chr5	121122526	121122726	+	774.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1C|Other|Other	68771.0	NM_001109992	19247.0	Mm.8681	NM_011202	ENSMUSG00000043733	Ptpn11	2700084A17Rik|AW536184|PTP1D|PTP2C|SAP-2|SH-PTP2|SH-PTP3|SHP-2|Shp2|Syp	protein tyrosine phosphatase, non-receptor type 11	protein-coding	-0.181690324940421	0.438700548718053	-0.165209673906455	1.08317891996294	-0.180134905266603	-0.155641738180529	-0.163473156677481	-0.170259673468814	-4.23595413839694	0.0633786855311613	1
Merged-chr14-46742912-4	chr14	46742836	46743036	+	961.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	-17605.0	NM_001360041	72391.0	Mm.272394	NM_028222	ENSMUSG00000037628	Cdkn3	2410006H10Rik|KAP	cyclin-dependent kinase inhibitor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-94238458-2	chr16	94238358	94238558	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360045, intron 5 of 10)	intron (NM_001360045, intron 5 of 10)	51833.0	NM_001360045	110948.0	Mm.30921	NM_139145	ENSMUSG00000040820	Hlcs	410I21.SP6|D16Jhu34	holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76229582-4	chr15	76229504	76229704	+	873.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_201385)	promoter-TSS (NM_201385)	-107.0	NM_201385	18810.0	Mm.234912	NM_011117	ENSMUSG00000022565	Plec	AA591047|AU042537|EBS1|PCN|PLTN|Plec1	plectin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5976411-2	chr17	5976311	5976511	+	872.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_151772, intron 2 of 25)	intron (NR_151772, intron 2 of 25)	825.0	NM_011523	20975.0	Mm.236068	NM_011523	ENSMUSG00000023805	Synj2	AI481647|SJ2|mKIAA0348	synaptojanin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-16086223-1	chr19	16086123	16086323	+	760.0	f1_balb.idr	Intergenic	Intergenic	-46608.0	NM_008139	14682.0	Mm.439701	NM_008139	ENSMUSG00000024639	Gnaq	1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI	guanine nucleotide binding protein, alpha q polypeptide	protein-coding	0.947661080376038	1.35914594944883	0.812342921119258	1.13869533628522	1.58836396856594	1.04169299359271	1.55512821778829	1.27814376727848	1.32866918083197	0.311073832482332	0.812185661277315
Merged-chr2-128796210-2	chr2	128796110	128796310	+	615.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 18 of 18)	intron (NM_008587, intron 18 of 18)	-22093.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53029199-2	chr4	53029099	53029299	+	972.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17319.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-130788600-1	chr7	130788500	130788700	+	548.0	f1_c57bl6.idr	intron (NM_001081038, intron 5 of 15)	intron (NM_001081038, intron 5 of 15)	14531.0	NM_001081038	330660.0	Mm.271550	NM_001081038	ENSMUSG00000040298	Btbd16	E330040A16Rik	BTB (POZ) domain containing 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-135735879-4	chr7	135735813	135736013	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19534.0	NM_001081117	17345.0	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-51867261-2	chr12	51867183	51867383	+	828.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	BC1_Mm|scRNA|scRNA	-37747.0	NM_144788	207304.0	Mm.249391	NM_144788	ENSMUSG00000035247	Hectd1	A630086P08Rik|AI844876|b2b327Clo|opm	HECT domain E3 ubiquitin protein ligase 1	protein-coding	2.46552209261237	2.42621523143873	1.38557375206237	1.81329478623163	2.72942866254165	2.7937397745209	2.06311336825336	3.13541957002307	1.35851250184891	0.11856060562057	0.540199767576184
Merged-chr6-108568063-4	chr6	108567963	108568163	+	997.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55104.0	NR_040757	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	2.29134033383898	2.59569833129199	3.77253166409527	2.82272228339883	2.98279396086329	2.77205617712203	4.05206796231328	2.94600231177246	0.492549577632094	0.481204396936924	0.929210758613564
Merged-chr1-80635893-4	chr1	80635850	80636050	+	923.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175291, intron 2 of 55)	intron (NM_175291, intron 2 of 55)	29402.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99001740-4	chr15	99001611	99001811	+	989.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15746.0	NR_045991	75951.0	Mm.441657	NR_045991	ENSMUSG00000097587	4930578M01Rik	3010001K12Rik	RIKEN cDNA 4930578M01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-120514441-4	chr5	120514307	120514507	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177595, intron 2 of 13)	intron (NM_001177595, intron 2 of 13)	3215.0	NM_001177594	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80020206-2	chr7	80020106	80020306	+	984.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4608.0	NM_001145999	209225.0	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5929752-4	chr19	5929627	5929827	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4911.0	NM_026772	104252.0	Mm.491103	NM_026772	ENSMUSG00000045664	Cdc42ep2	1110008C05Rik|Borg1|Cep2|D19Bwg1013e	CDC42 effector protein (Rho GTPase binding) 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-67447711-2	chr18	67447611	67447811	+	610.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027130, intron 1 of 16)	intron (NM_027130, intron 1 of 16)	1425.0	NM_027130	69597.0	Mm.426052	NM_027130	ENSMUSG00000024527	Afg3l2	2310036I02Rik|AW260507|Emv66|par	AFG3-like AAA ATPase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-63130062-4	chr1	63129957	63130157	+	868.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045914, intron 1 of 3)	ERVB7_1-LTR_MM|LTR|ERVK	15317.0	NR_045914	100380944.0	Mm.392955	NR_045914	ENSMUSG00000084799	Ino80dos	Gm11602	INO80 complex subunit D, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150964792-2	chr4	150964692	150964892	+	658.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	U1|snRNA|snRNA	-32305.0	NM_011910	24111.0	Mm.89984	NM_011910	ENSMUSG00000028963	Uts2	UII|Ucn2|prepro-UII	urotensin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-80056764-2	chr12	80056664	80056864	+	832.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56249.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-25438537-3	chr12	25438441	25438641	+	861.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	309367.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-88433698-4	chr1	88433609	88433809	+	935.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26699.0	NM_029269	75396.0	Mm.173058	NM_029269	ENSMUSG00000026295	Spp2	0610038O04Rik|pp-24|spp24	secreted phosphoprotein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-34666292-3	chr19	34666204	34666404	+	674.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25415.0	NM_008331	15957.0	Mm.439751	NM_008331	ENSMUSG00000034459	Ifit1	ISG56|Ifi56|P56	interferon-induced protein with tetratricopeptide repeats 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-60803075-4	chr18	60802957	60803157	+	977.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010545)	promoter-TSS (NM_010545)	-792.0	NM_001042605	16149.0	Mm.439737	NM_010545	ENSMUSG00000024610	Cd74	CLIP|DHLAG|HLADG|Ia-GAMMA|Ii	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	protein-coding	4.43435597352557	4.24017937367174	4.2285476245641	4.43350965114084	3.51680877380717	5.4230992227955	4.37789709006255	4.50137044116398	0.347296035822658	0.442657069659299	0.911647291190116
Merged-chr5-64693819-1	chr5	64693719	64693919	+	674.0	f1_c57bl6.idr	Intergenic	Intergenic	-83120.0	NR_045078	100042198.0	Mm.25191	NR_045078	ENSMUSG00000105402	Gm3716	Gm1683	predicted gene 3716	ncRNA	3.34910162817099	3.07130379389096	2.7919492283157	2.79713121585306	1.87291547769023	2.29629365901309	1.33118834778931	1.29180600345088	-2.80080200002641	0.00168998135363359	0.029643854211836
Merged-chr1-68840548-2	chr1	68840448	68840648	+	733.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010154, intron 1 of 26)	Lx5|LINE|L1	267511.0	NM_010154	13869.0	Mm.442420	NM_010154	ENSMUSG00000062209	Erbb4	Her4|c-erbB-4	erb-b2 receptor tyrosine kinase 4	protein-coding	1.10091489230113	0.659767393466755	0.64458402908694	0.63259843485348	1.34345955850509	1.77697889748167	0.647965950219555	1.80053150659341	3.02743002778576	0.0579243443651801	0.356207967075077
Merged-chr1-93166897-2	chr1	93166797	93166997	+	561.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1526.0	NM_001310428	381284.0	Mm.193346	NM_001310428	ENSMUSG00000084989	Crocc2	E030010N08Rik|Gm976	ciliary rootlet coiled-coil, rootletin family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-32386755-3	chr19	32386712	32386912	+	921.265869	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 1 of 9)	intron (NM_144792, intron 1 of 9)	1237.0	NM_001362423	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	2.01975273553022	1.0901805492123	1.06309872597562	1.92251963502417	2.71108392276543	2.20092980467622	2.00103149868115	1.04523565044045	1.33248144258068	0.265292357208798	0.767868802425779
Merged-chr1-189688820-2	chr1	189688693	189688893	+	743.25	f0_balb.idr|f1_balb.idr	promoter-TSS (NM_001081363)	promoter-TSS (NM_001081363)	-707.0	NM_001081363	108000.0	Mm.129746	NM_001081363	ENSMUSG00000026605	Cenpf	6530404A22Rik|AI325968|CENF|Lek1|PRO1779|mitosin	centromere protein F	protein-coding	2.41481418016224	2.89642252787038	2.10527668520722	2.41138450613353	3.66230770519095	4.41113404015835	2.67265336813869	3.94052720483053	2.17377250039979	0.00105094092409124	0.0202070339859722
Merged-chr3-137879884-4	chr3	137879786	137879986	+	909.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033155, intron 1 of 7)	(TTG)n|Simple_repeat|Simple_repeat	12211.0	NM_001033155	70604.0	Mm.256488	NM_001033155	ENSMUSG00000074212	Dnajb14	5730496F10Rik	DnaJ heat shock protein family (Hsp40) member B14	protein-coding	1.24258084074598	1.50921058828108	1.05942794477568	1.30545874969925	1.35387174650791	1.25664811002505	1.06510386933221	1.31194138515253	-0.165218669528157	0.892364482675269	0.998431161219273
Merged-chr4-133158726-2	chr4	133158626	133158826	+	944.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153423, intron 1 of 8)	intron (NM_153423, intron 1 of 8)	28093.0	NM_153423	242687.0	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-83987902-4	chr12	83987827	83988027	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134188)	promoter-TSS (NM_134188)	66.0	NM_134188	171210.0	Mm.371675	NM_134188	ENSMUSG00000021226	Acot2	AA571646|MTE-I|Mte1	acyl-CoA thioesterase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80692388-4	chr10	80692311	80692511	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172457, intron 1 of 3)	ID_B1|SINE|B4	9409.0	NM_172457	208228.0	Mm.49309	NM_172457	ENSMUSG00000003348	Mob3a	5330417K06Rik|A630029F06|AV218468|Mobkl2a	MOB kinase activator 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-102664236-4	chr13	102664144	102664344	+	967.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29303.0	NM_001360519	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34075439-2	chr17	34075339	34075539	+	790.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16940.0	NM_008206	15001.0	Mm.116	NM_008206	ENSMUSG00000024334	H2-Oa	H-2Oa	histocompatibility 2, O region alpha locus	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-32857649-4	chr18	32857576	32857776	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110015, intron 16 of 22)	intron (NM_001110015, intron 16 of 22)	-20389.0	NR_045381	75795.0	Mm.382634	NR_045381	ENSMUSG00000097553	4930455D15Rik	-	RIKEN cDNA 4930455D15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101283356-4	chr15	101283254	101283454	+	865.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026566)	promoter-TSS (NM_026566)	-947.0	NM_026566	68118.0	Mm.482360	NM_026566	ENSMUSG00000037204	Atg101	9430023L20Rik|AA407441|AU022967	autophagy related 101	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107709568-2	chr9	107709468	107709668	+	688.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011349, intron 1 of 17)	CpG	907.0	NM_011349	20350.0	Mm.12903	NM_011349	ENSMUSG00000034684	Sema3f	Sema4|Semak	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-99150599-2	chr11	99150499	99150699	+	547.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007719, intron 1 of 2)	intron (NM_007719, intron 1 of 2)	4478.0	NM_001301713	12775.0	Mm.2932	NM_007719	ENSMUSG00000037944	Ccr7	CC-CKR-7|CCR-7|CD197|Cdw197|Cmkbr7|EBI1|Ebi1h	chemokine (C-C motif) receptor 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-87008543-2	chr3	87008443	87008643	+	723.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13D3|LTR|ERVK	-9203.0	NM_007639	12479.0	Mm.1894	NM_007639	ENSMUSG00000028076	Cd1d1	AI747460|CD1.1|Cd1a|Cd1d|Ly-38	CD1d1 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-16382549-2	chr19	16382449	16382649	+	961.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008139, intron 6 of 6)	MTD|LTR|ERVL-MaLR	-53118.0	NM_008137	14675.0	Mm.313181	NM_008137	ENSMUSG00000024697	Gna14	AU023208	guanine nucleotide binding protein, alpha 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33669260-2	chr16	33669160	33669360	+	638.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-15206.0	NM_175256	77446.0	Mm.245741	NM_172934	ENSMUSG00000075254	Heg1	4632417D23Rik|5530401I02Rik|9530025L16Rik|BC038614|Gm629	heart development protein with EGF-like domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16934054-2	chr7	16933954	16934154	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-10022.0	NM_007590	12315.0	Mm.288630	NM_007590	ENSMUSG00000019370	Calm3	CaMA|Cam3|Camc|R75142	calmodulin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-76441233-2	chr11	76441133	76441333	+	959.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346670, intron 15 of 21)	MTC|LTR|ERVL-MaLR	27232.0	NM_001291186	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-25745186-4	chr8	25745093	25745293	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361595, intron 7 of 15)	intron (NM_001361595, intron 7 of 15)	9087.0	NM_028102	72108.0	Mm.246875	NM_028102	ENSMUSG00000061313	Ddhd2	2010305K11Rik|SAMWD1|mKIAA0725	DDHD domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-52060774-3	chr6	52060668	52060868	+	655.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42181.0	NR_110440	102635415.0	Mm.333063	NR_110440	ENSMUSG00000085412	Halr1	Gm15055|Haunt|Linchoxa1|linc-Evx1|linc-Hoxa1|linc1547	Hoxa adjacent long noncoding RNA 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-32756287-7	chr19	32756211	32756411	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1266.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-92818793-2	chr16	92818693	92818893	+	866.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111022, intron 2 of 6)	intron (NM_001111022, intron 2 of 6)	7281.0	NM_001111021	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139668662-4	chr5	139668552	139668752	+	966.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	67681.0	NM_174850	231830.0	Mm.240510	NM_174850	ENSMUSG00000036718	Micall2	A930021H16Rik|JRAB|MICAL-L2|mFLJ00139	MICAL-like 2	protein-coding	1.94738244457571	2.31061561868989	1.79112473464763	2.71220757226864	2.5264709386994	2.03813050982614	1.60349503426478	2.39623586120745	-0.115825483674943	0.898272333477411	0.998431161219273
Merged-chr10-31299355-4	chr10	31299260	31299460	+	917.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14045.0	NM_027168	69692.0	Mm.245537	NM_027168	ENSMUSG00000000295	Hddc2	2310057G13Rik	HD domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-77623144-5	chr10	77622943	77623143	+	935.159973	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019803, intron 1 of 5)	intron (NM_019803, intron 1 of 5)	722.0	NM_019803	22213.0	Mm.458125	NM_019803	ENSMUSG00000009293	Ube2g2	1110003O05Rik|D10Xrf369|UBC7|Ubc7p	ubiquitin-conjugating enzyme E2G 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-104579476-2	chr2	104579376	104579576	+	639.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	-11008.0	NM_177253	228410.0	Mm.259876	NM_145529	ENSMUSG00000027176	Cstf3	4732468G05Rik|C79532|CstF-77	cleavage stimulation factor, 3' pre-RNA, subunit 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-17060191-4	chr7	17060109	17060309	+	875.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162950, intron 1 of 14)	intron (NM_001162950, intron 1 of 14)	2218.0	NM_001162950	53417.0	Mm.135110	NM_016868	ENSMUSG00000004328	Hif3a	Ipas|MOP7|NEPAS|bHLHe17	hypoxia inducible factor 3, alpha subunit	protein-coding	2.39832047047762	3.23839065566066	1.373955928306	2.97123554880898	1.91032877912939	2.83503668162289	1.6613492132405	2.83096537292463	-0.498926285909396	0.585141961422837	0.967268722441911
Merged-chr16-25058227-4	chr16	25058126	25058326	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1413.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128997725-2	chr2	128997625	128997825	+	842.916626	f1_balb.idr|f1_c57bl6.idr	exon (NM_178404, exon 4 of 12)	exon (NM_178404, exon 4 of 12)	30323.0	NM_178404	78751.0	Mm.26377	NM_178404	ENSMUSG00000042851	Zc3h6	4631426G04Rik|4833425H18Rik|AU024389|AW060453|Zc3hdc6|mKIAA2035	zinc finger CCCH type containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120502571-2	chr8	120502471	120502671	+	960.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198671, intron 1 of 15)	intron (NM_198671, intron 1 of 15)	13705.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3701949-1	chr19	3701849	3702049	+	543.0	f1_balb.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-6344.0	NM_001358256	72056.0	Mm.23780	NM_028077	ENSMUSG00000035372	1810055G02Rik	AI256204	RIKEN cDNA 1810055G02 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36574867-2	chr1	36574767	36574967	+	770.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001126046, intron 12 of 14)	intron (NM_001126046, intron 12 of 14)	-16486.0	NM_001126047	20353.0	Mm.29558	NM_001126047	ENSMUSG00000026121	Sema4c	AI426163|M-Sema F|Semacl1|Semaf|Semai|sema I	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-120980011-4	chr10	120979905	120980105	+	914.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081193)	promoter-TSS (NM_001081193)	-675.0	NM_001081193	380664.0	Mm.339371	NM_001081193	ENSMUSG00000048661	Lemd3	AI316861|Man1	LEM domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-81613458-2	chr11	81613358	81613558	+	902.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001034013, intron 1 of 9)	intron (NM_001034013, intron 1 of 9)	-39919.0	NM_001033765	237880.0	Mm.435528	NM_001033765		1700071K01Rik	-	RIKEN cDNA 1700071K01 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-52748432-4	chr1	52748323	52748523	+	922.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21065.0	NM_001357464	98682.0	Mm.491173	NM_133829	ENSMUSG00000041439	Mfsd6	2210010L05Rik|9630025I22Rik|AI836200|AW212394|MMR2	major facilitator superfamily domain containing 6	protein-coding	1.44705723632699	1.33267888919339	2.2661944049254	2.78178814745292	2.21363216534039	1.85955038812323	2.62590301585802	3.17805274140461	0.974750406592596	0.309636431871574	0.810431481150773
Merged-chr4-95209958-2	chr4	95209858	95210058	+	720.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-157736.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-90742962-2	chr16	90742862	90743062	+	705.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029844, intron 1 of 2)	intron (NM_029844, intron 1 of 2)	4638.0	NM_029844	77037.0	Mm.22455	NM_029844	ENSMUSG00000039956	Mrap	1110025G12Rik|C21ORF61|Falp|ORF61	melanocortin 2 receptor accessory protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-59185799-4	chr3	59185692	59185892	+	957.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302203, intron 1 of 2)	intron (NM_001302203, intron 1 of 2)	9312.0	NM_001302203	84111.0	Mm.60267	NM_032399	ENSMUSG00000051431	Gpr87	-	G protein-coupled receptor 87	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-87206623-3	chr17	87206563	87206763	+	558.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11721.0	NR_046016	399626.0	Mm.396062	NR_046016		C330024C12Rik	-	RIKEN cDNA C330024C12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-111182477-2	chr7	111182377	111182577	+	897.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59802.0	NR_015573	75479.0	Mm.381620	NR_015573	ENSMUSG00000110424	1700012D14Rik	-	RIKEN cDNA 1700012D14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75054864-4	chr11	75054764	75054964	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001002764, intron 13 of 18)	intron (NM_001002764, intron 13 of 18)	11127.0	NR_030454	735274.0		NR_030454	ENSMUSG00000106252	Mir684-1	Mirn684-1	microRNA 684-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-139234682-1	chr4	139234582	139234782	+	780.0	f1_balb.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	40571.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	1.41854896213474	1.86546913315311	1.12599842968691	1.75326215743884	1.88102388607616	2.00349121931853	1.81697096573995	1.7620615147738	0.936383141141129	0.382462247508555	0.873499120356786
Merged-chr1-138253116-1	chr1	138253016	138253216	+	545.0	f0_balb.idr	Intergenic	Lx5|LINE|L1	-20622.0	NM_177397	338375.0	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-94362673-2	chr8	94362573	94362773	+	589.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_019415, intron 24 of 24)	intron (NM_019415, intron 24 of 24)	-23756.0	NM_001357205	64209.0	Mm.29151	NM_022331	ENSMUSG00000031770	Herpud1	Herp|Mifl|SUP	homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-32624000-3	chr9	32623881	32624081	+	921.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72061.0	NM_011808	23871.0	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124738665-4	chr6	124738565	124738765	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001077705)	promoter-TSS (NM_001077705)	44.0	NM_001077705	15170.0	Mm.271799	NM_013545	ENSMUSG00000004266	Ptpn6	70Z-SHP|Hcph|PTPTY-42|Ptp1C|SH-PTP1|SHP-1|hcp|me	protein tyrosine phosphatase, non-receptor type 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-65674712-2	chr18	65674609	65674809	+	696.25	f0_balb.idr|f1_balb.idr	intron (NM_001361052, intron 6 of 8)	intron (NM_001361052, intron 6 of 8)	-23559.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	1.1823535237128	0.88015470497733	1.28553694499935	0.846516212865499	1.33541999670106	1.66504777431068	2.33410771652893	1.54493203440959	2.66781169795263	0.0379600037273202	0.277146526199019
Merged-chr17-35278977-2	chr17	35278877	35279077	+	547.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15854.0	NM_001267808	14980.0	Mm.439675	NM_001267808		H2-L	H-2L	histocompatibility 2, D region locus L	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-136113178-4	chr3	136113117	136113317	+	936.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033350, intron 7 of 16)	intron (NM_001033350, intron 7 of 16)	212849.0	NM_001310749	242248.0	Mm.30832	NM_001033350	ENSMUSG00000037922	Bank1	A530094C12Rik|AI451642|AVIEF|BANK	B cell scaffold protein with ankyrin repeats 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-25607608-4	chr14	25607460	25607660	+	858.24585	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 6 of 23)	CpG	4047.0	NM_001309430	100188919.0	Mm.473810	NM_001309430		Gm45915	Israa	predicted gene, 45915	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-88898747-4	chr6	88898649	88898849	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008564)	promoter-TSS (NM_008564)	31.0	NM_008564	17216.0	Mm.16711	NM_008564	ENSMUSG00000002870	Mcm2	AA959861|AW476101|BM28|CDCL1|Mcmd2|mKIAA0030	minichromosome maintenance complex component 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-43013599-2	chr6	43013499	43013699	+	644.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58099.0	NM_146656	258650.0	Mm.377613	NM_146656	ENSMUSG00000073110	Olfr444	MOR261-2	olfactory receptor 444	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-41353084-3	chr4	41352980	41353180	+	857.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001355508, exon 1 of 7)	5' UTR (NM_001355508, exon 1 of 7)	1117.0	NM_001355508	67123.0	Mm.289795	NM_023305	ENSMUSG00000028437	Ubap1	2700092A01Rik|NAG20|UBAP-1|Ubap	ubiquitin-associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97464355-4	chr6	97464230	97464430	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	-5044.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	3.56182862648879	4.64224014955948	4.91737032459359	4.27801399032338	3.59334971196584	4.67351765233432	4.95077610852112	4.35111310629597	0.0529210725639925	0.907920834422476	0.998431161219273
Merged-chr2-160621583-5	chr2	160621404	160621604	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24393.0	NM_009408	21969.0	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-69792005-2	chr8	69791905	69792105	+	939.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_133224, intron 1 of 25)	PB1D9|SINE|Alu	842.0	NM_133224	170759.0	Mm.186066	NM_133224	ENSMUSG00000031862	Atp13a1	Atp13a|Cgi152|catp	ATPase type 13A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-24933914-4	chr16	24933814	24934014	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 10 of 12)	intron (NM_178665, intron 10 of 12)	-125725.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-145258926-1	chr7	145258826	145259026	+	589.5	f1_balb.idr	intron (NR_132643, intron 15 of 22)	intron (NR_132643, intron 15 of 22)	25085.0	NR_132644	233979.0	Mm.102235	NM_146206	ENSMUSG00000048677	Tpcn2	D830047E22Rik|Gm35086	two pore segment channel 2	protein-coding	-0.54341485374287	-0.89742595136803	-0.905016171108014	-0.907153240756156	-0.910163754634862	-0.894797809717363	-0.448600745209986	-0.906780294735573	0.400252185036517	0.89827482116786	1
Merged-chr7-120677506-4	chr7	120677382	120677582	+	982.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164580)	promoter-TSS (NM_001164580)	-138.0	NM_001164580	233812.0	Mm.276479	NM_001164580	ENSMUSG00000046096	Mosmo	Atthog	modulator of smoothened	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34934051-4	chr17	34933962	34934162	+	879.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010893, exon 4 of 6)	exon (NM_010893, exon 4 of 6)	2809.0	NM_010893	18010.0	Mm.8856	NM_010893	ENSMUSG00000007038	Neu1	AA407268|AA407316|Aglp|Apl|Bat-7|Bat7|G9|Map-2|Neu|Neu-1	neuraminidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118227852-4	chr11	118227750	118227950	+	971.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	-15108.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-82822473-3	chr18	82822381	82822581	+	877.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33416.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-49453004-4	chr2	49452920	49453120	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172663, intron 1 of 13)	intron (NM_172663, intron 1 of 13)	1534.0	NM_172663	227867.0	Mm.29167	NM_172663	ENSMUSG00000069495	Epc2	5830499L14|D2Ertd694e	enhancer of polycomb homolog 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-46985934-4	chr7	46985854	46986054	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033461, intron 3 of 4)	(TG)n|Simple_repeat|Simple_repeat	9322.0	NR_033461	629141.0	Mm.229259	NR_033461	ENSMUSG00000056509	Gm9999	-	predicted gene 9999	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-5291720-4	chr6	5291619	5291819	+	995.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183308, intron 1 of 8)	intron (NM_183308, intron 1 of 8)	6654.0	NM_183308	330260.0	Mm.126984	NM_183308	ENSMUSG00000032667	Pon2	6330405I24Rik|AI481612	paraoxonase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128126602-3	chr2	128126521	128126721	+	953.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001284410)	promoter-TSS (NM_001284410)	583.0	NM_009754	12125.0	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117209801-4	chr10	117209699	117209899	+	981.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14708.0	NM_026570	64050.0	Mm.233529	NM_026570	ENSMUSG00000020171	Yeats4	4930573H17Rik|B230215M10Rik|GAS41|NuBI-1	YEATS domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-62686526-2	chr2	62686426	62686626	+	629.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_145523, intron 5 of 7)	B3|SINE|B2	22199.0	NM_145523	227960.0	Mm.219877	NM_145523	ENSMUSG00000026893	Gca	5133401E04Rik|AI573844	grancalcin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-24664281-4	chr6	24664181	24664381	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028459, intron 1 of 10)	intron (NM_028459, intron 1 of 10)	714.0	NM_001167745	73178.0	Mm.1574	NM_028459	ENSMUSG00000029684	Wasl	2900021I12Rik|3110031I02Rik|N-WASP	Wiskott-Aldrich syndrome-like (human)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-22928771-4	chr8	22928647	22928847	+	915.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081149, intron 13 of 17)	intron (NM_001081149, intron 13 of 17)	-46089.0	NM_001110783	11733.0	Mm.334444	NM_031158	ENSMUSG00000031543	Ank1	Ank-1|nb|pale	ankyrin 1, erythroid	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-32485907-4	chr19	32485802	32486002	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010799, exon 1 of 5)	5' UTR (NM_010799, exon 1 of 5)	133.0	NM_010799	17330.0	Mm.255116	NM_010799	ENSMUSG00000024896	Minpp1	AA408516	multiple inositol polyphosphate histidine phosphatase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118210335-2	chr11	118210235	118210435	+	775.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	L2b|LINE|L2	2407.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72399703-2	chr6	72399603	72399803	+	871.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-9036.0	NM_016794	22320.0	Mm.1838	NM_016794	ENSMUSG00000050732	Vamp8	AU041171|Edb|endobrevin	vesicle-associated membrane protein 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-10430772-2	chr3	10430672	10430872	+	554.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001127191, intron 4 of 6)	B1_Mur2|SINE|Alu	9358.0	NM_029068	74718.0	Mm.440548	NM_029068	ENSMUSG00000027534	Snx16	4930522N22Rik|AI117577|AI747675	sorting nexin 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-128447619-2	chr6	128447519	128447719	+	562.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_028593, intron 2 of 4)	intron (NR_028593, intron 2 of 4)	8862.0	NR_028593	791299.0	Mm.297516	NR_028592	ENSMUSG00000059659	Gm10069	-	predicted gene 10069	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-95468337-4	chr1	95468255	95468455	+	726.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	154727.0	NM_026321	67698.0	Mm.272705	NM_026321	ENSMUSG00000051185	Fam174a	2310044D20Rik|Fam174|Naa6|Tmem157	family with sequence similarity 174, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-51483139-3	chr14	51483006	51483206	+	752.277771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVB4_3-LTR_MM|LTR|ERVK	31144.0	NM_009486	22301.0	Mm.482572	NM_009486	ENSMUSG00000070448	Vmn2r89	V2r10|V2r11	vomeronasal 2, receptor 89	protein-coding	0.711027390231056	0.841223874096559	0.370254000755177	0.651389307024049	0.614559091556649	0.562677107449643	0.371606602532624	0.772359196434697	-0.428449514599412	0.797454630965011	1
Merged-chr8-105716758-2	chr8	105716658	105716858	+	659.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_027469, exon 3 of 3)	exon (NM_027469, exon 3 of 3)	8469.0	NM_027655	71046.0	Mm.280888	NM_027655	ENSMUSG00000013158	4933405L10Rik	-	RIKEN cDNA 4933405L10 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126805330-2	chr8	126805230	126805430	+	875.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-43690.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-27379553-4	chr14	27379447	27379647	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027871, intron 3 of 10)	intron (NM_027871, intron 3 of 10)	18158.0	NM_001289688	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135477779-2	chr5	135477679	135477879	+	622.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146001, intron 1 of 30)	MTEa|LTR|ERVL-MaLR	67343.0	NM_146001	215114.0	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-131757728-2	chr2	131757628	131757828	+	648.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME2|LINE|L1	89928.0	NR_029381	414081.0	Mm.246905	NR_029381	ENSMUSG00000086822	5330413P13Rik	-	RIKEN cDNA 5330413P13 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-24318876-3	chr13	24318766	24318966	+	699.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8538.0	NM_001284519	12763.0	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-107164235-4	chr4	107164126	107164326	+	725.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025617, intron 3 of 4)	intron (NM_025617, intron 3 of 4)	14140.0	NM_025617	66526.0	Mm.246956	NM_025617	ENSMUSG00000028619	Tceanc2	2210010B22Rik|2210012G02Rik|6330404A07Rik|AU015593|Tdeanc2	transcription elongation factor A (SII) N-terminal and central domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-97930656-3	chr3	97930581	97930781	+	839.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033779, intron 1 of 1)	intron (NM_001033779, intron 1 of 1)	508.0	NM_001033779	433632.0	Mm.212421	NM_001033779		Gm5544	EG433632	predicted gene 5544	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-49235445-2	chr12	49235345	49235545	+	558.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	-147438.0	NM_001160112	15228.0	Mm.4704	NM_008241	ENSMUSG00000020950	Foxg1	2900064B05Rik|BF-1|Bf1|Hfh9|Hfhbf1	forkhead box G1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-136543311-4	chr6	136543219	136543419	+	973.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019426, intron 1 of 14)	intron (NM_019426, intron 1 of 14)	24468.0	NM_019426	54343.0	Mm.173271	NM_019426	ENSMUSG00000030213	Atf7ip	2610204M12Rik|AM|Mcaf1	activating transcription factor 7 interacting protein	protein-coding	2.10705481950429	1.18632042056141	1.87166870307166	1.36015332241448	1.74293066654248	2.07959006443293	2.21833296712805	1.82883656166803	0.810967061665618	0.44228694823277	0.911466644606109
Merged-chr4-137862214-4	chr4	137862128	137862328	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199307)	promoter-TSS (NM_199307)	-9.0	NM_199307	230857.0	Mm.401062	NM_199307	ENSMUSG00000057530	Ece1	AW322500|ECE-1|ECE-1a|ECE-1b|ECE-1d	endothelin converting enzyme 1	protein-coding	2.94976350512652	3.94452040012859	1.96939527562838	3.65606936405653	3.30420153806695	4.08827934959749	3.01872827941435	3.13291824553512	0.200733002392095	0.763060499337249	0.998431161219273
Merged-chr11-53796957-4	chr11	53796855	53797055	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033332, intron 3 of 3)	intron (NR_033332, intron 3 of 3)	26482.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116590799-2	chr11	116590699	116590899	+	633.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-2888.0	NR_033223	11298.0	Mm.42233	NM_009591	ENSMUSG00000020804	Aanat	AA-NAT|Nat-2|Nat4|Snat	arylalkylamine N-acetyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88503463-7	chr3	88503376	88503576	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001111102)	promoter-TSS (NM_001111102)	-124.0	NM_001002011	16905.0	Mm.243014	NM_019390	ENSMUSG00000028063	Lmna	Dhe	lamin A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107519587-1	chr9	107519487	107519687	+	564.0	f1_balb.idr	intron (NM_001174047, intron 23 of 38)	intron (NM_001174047, intron 23 of 38)	-14358.0	NM_019704	56395.0	Mm.260153	NM_019704	ENSMUSG00000010045	Tmem115	C78915|Pl6|Pp6	transmembrane protein 115	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-78302513-1	chr16	78302413	78302613	+	634.5	f0_balb.idr	intron (NM_001025192, intron 1 of 6)	intron (NM_001025192, intron 1 of 6)	842.0	NM_001276263	13052.0	Mm.66222	NM_009988	ENSMUSG00000022865	Cxadr	2610206D03Rik|AU016810|AW553441|CAR|MCAR|MCVADR	coxsackie virus and adenovirus receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-76193832-2	chr14	76193732	76193932	+	595.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57630.0	NR_152108	72893.0	Mm.233565	NR_152108		2900040C04Rik	-	RIKEN cDNA 2900040C04 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-67828620-4	chr5	67828533	67828733	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038999, intron 1 of 36)	MLT1A|LTR|ERVL-MaLR	18798.0	NM_009727	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-125017415-2	chr5	125017315	125017515	+	564.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001253904, exon 48 of 48)	3' UTR (NM_001253904, exon 48 of 48)	13940.0	NM_028443	73121.0	Mm.296138	NM_028443	ENSMUSG00000037962	Rflna	3110032G18Rik|Fam101a|cfm|cfm2	refilin A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-100614627-4	chr15	100614513	100614713	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045701, exon 2 of 2)	non-coding (NR_045701, exon 2 of 2)	497.0	NR_045701	78445.0	Mm.44383	NR_045701	ENSMUSG00000097093	C330013E15Rik	-	RIKEN cDNA C330013E15 gene	ncRNA	1.36208713253507	1.31644342403167	2.86742446447737	1.78529944296131	1.37508217938312	1.32692806030073	2.89166387825496	0.968297478086286	-0.232371358140548	0.840057175277587	0.998431161219273
Merged-chr17-64724080-2	chr17	64723980	64724180	+	680.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008549, intron 16 of 21)	intron (NM_008549, intron 16 of 21)	-43031.0	NR_105051	101202683.0	Mm.393309	NR_105051		Dreh	-	down-regulated in hepatocellular carcinoma	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-88215690-2	chr1	88215590	88215790	+	663.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_201642, intron 2 of 4)	intron (NM_201642, intron 2 of 4)	3731.0	NM_201645	394436.0	Mm.300095	NM_201645	ENSMUSG00000089960	Ugt1a1	Gnt1|UDPGT 1-1|UGT1A01|Udpgt-1a|UgtBr1	UDP glucuronosyltransferase 1 family, polypeptide A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-23028401-4	chr19	23028300	23028500	+	980.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-112826.0	NM_010638	16601.0	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|Gm9971	Kruppel-like factor 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70826433-2	chr11	70826333	70826533	+	704.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-13872.0	NM_001045526	327957.0	Mm.164325	NM_001045526	ENSMUSG00000057135	Scimp	A430084P05Rik	SLP adaptor and CSK interacting membrane protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-39227948-2	chr6	39227848	39228048	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-21175.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152810003-4	chr1	152809896	152810096	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010877, intron 2 of 15)	intron (NM_010877, intron 2 of 15)	9843.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-45472250-4	chr4	45472159	45472359	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033306, intron 2 of 5)	intron (NM_001033306, intron 2 of 5)	58569.0	NM_001033306	230126.0	Mm.251716	NM_001033306	ENSMUSG00000044813	Shb	BC028832	src homology 2 domain-containing transforming protein B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-85646417-6	chr15	85646348	85646548	+	745.8944700000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57325.0	NR_110483	102800312.0	Mm.33117	NR_110483		Lncppara	Lincppara|Mirlet7bhg|linc-Ppara	long noncoding RNA near Ppara	ncRNA	1.93347607672589	1.28256310836905	1.96965423220221	2.13985742560987	1.94889137306199	2.29511516547988	2.21860892754388	1.79230529299973	0.551378303238718	0.573038887717243	0.964460942882936
Merged-chr4-47398422-4	chr4	47398300	47398500	+	919.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001312869, intron 3 of 7)	intron (NM_001312869, intron 3 of 7)	12184.0	NM_001312869	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-103212379-4	chr3	103212304	103212504	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR30D2_MM|LTR|ERV1	40749.0	NM_001356331	68183.0	Mm.104919	NM_026602	ENSMUSG00000005687	Bcas2	6430539P16Rik|AI132645|C76366|C80030	breast carcinoma amplified sequence 2	protein-coding	2.59920548095112	3.47380513192494	1.98919362853733	2.83350851973708	2.41762278488564	3.03875115361876	2.00464990019683	2.54241413290023	-0.546158140091214	0.484204085451662	0.931207887927275
Merged-chr18-52410059-2	chr18	52409959	52410159	+	760.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L3b|LINE|CR1	-55634.0	NM_026040	67222.0	Mm.100617	NM_026040	ENSMUSG00000024528	Srfbp1	2810036K01Rik|p49/STRAP	serum response factor binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26944718-2	chr17	26944618	26944818	+	748.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001281491, exon 2 of 19)	exon (NM_001281491, exon 2 of 19)	3266.0	NM_001281491	240057.0	Mm.328888	NM_001281491	ENSMUSG00000067629	Syngap1	Gm1963|Syngap	synaptic Ras GTPase activating protein 1 homolog (rat)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-72173247-1	chr8	72173147	72173347	+	918.0	f1_balb.idr	intron (NM_023126, intron 3 of 7)	intron (NM_023126, intron 3 of 7)	12047.0	NM_023126	17274.0	Mm.162811	NM_023126	ENSMUSG00000003037	Rab8a	AA409338|Mel	RAB8A, member RAS oncogene family	protein-coding	-0.213419626959818	-0.199923992926101	0.113192637662588	0.406086787688432	-0.212579913065214	-0.19892364209545	-0.203379064607644	0.212117579328977	-1.22568283380007	0.61266956943451	1
Merged-chr5-99414144-2	chr5	99414044	99414244	+	959.166626	f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 2 of 3)	intron (NR_030692, intron 2 of 3)	-161217.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-153583324-2	chr3	153583224	153583424	+	886.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011372, intron 1 of 4)	intron (NM_011372, intron 1 of 4)	141809.0	NM_011372	20447.0	Mm.296453	NM_011372	ENSMUSG00000052544	St6galnac3	Siat7c	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80202733-2	chr7	80202633	80202833	+	998.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360135, intron 1 of 13)	intron (NM_001360135, intron 1 of 13)	4292.0	NM_001360135	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97424137-2	chr11	97424037	97424237	+	928.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26023.0	NM_021493	58996.0	Mm.394118	NM_021493	ENSMUSG00000049807	Arhgap23	A330041B18Rik	Rho GTPase activating protein 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-81657807-4	chr12	81657705	81657905	+	918.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033149, intron 1 of 2)	intron (NM_001033149, intron 1 of 2)	26556.0	NM_001033149	69480.0	Mm.130002	NM_001033149	ENSMUSG00000042734	Ttc9	-	tetratricopeptide repeat domain 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167271720-2	chr2	167271620	167271820	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31183.0	NM_008968	19223.0	Mm.2339	NM_008968	ENSMUSG00000017969	Ptgis	Cyp8|Cyp8a1|Pgis	prostaglandin I2 (prostacyclin) synthase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-23645104-3	chr17	23645029	23645229	+	829.200012	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001320258, exon 1 of 10)	5' UTR (NM_001320258, exon 1 of 10)	140.0	NM_001033339	240047.0	Mm.235343	NM_001033339	ENSMUSG00000023903	Mmp25	F730048C11Rik|Leukolysin|MMP20|MT6-MMP	matrix metallopeptidase 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65460872-4	chr9	65460766	65460966	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138584)	promoter-TSS (NM_138584)	-71.0	NM_138584	27965.0	Mm.272475	NM_138584	ENSMUSG00000032388	Spg21	ACP33|BM-019|C78576|D9Wsu18e|GL010|MAST	SPG21, maspardin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3056023-2	chr4	3055923	3056123	+	613.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CAGTA)n|Simple_repeat|Simple_repeat	-116060.0	NM_001167534	100312470.0	Mm.480297	NM_001167534	ENSMUSG00000115072	Vmn1r2	Gm11776	vomeronasal 1 receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-103719035-4	chr14	103718941	103719141	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19609.0	NR_045148	70898.0	Mm.27548	NR_045148	ENSMUSG00000089707	Slain1os	4921525B02Rik	SLAIN motif family, member 1, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-88746902-2	chr9	88746802	88747002	+	668.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15052.0	NM_007536	12047.0	Mm.378888	NM_007536	ENSMUSG00000099974	Bcl2a1d	A1-d	B cell leukemia/lymphoma 2 related protein A1d	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3791971-4	chr12	3791896	3792096	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14984.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-94849560-4	chr13	94849442	94849642	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26085.0	NM_011021	18420.0	Mm.42051	NM_011021	ENSMUSG00000021685	Otp	-	orthopedia homeobox	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-68725578-4	chr10	68725486	68725686	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177794, intron 1 of 5)	intron (NM_177794, intron 1 of 5)	1840.0	NM_177794	327766.0	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81938537-2	chr15	81938437	81938637	+	674.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145473, intron 1 of 3)	intron (NM_145473, intron 1 of 3)	1778.0	NM_145473	105859.0	Mm.22524	NM_145473	ENSMUSG00000042109	Csdc2	AI415250|AI481750|Pippin	cold shock domain containing C2, RNA binding	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-38520765-2	chr15	38520665	38520865	+	752.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	-1499.0	NM_018745	54375.0	Mm.250214	NM_018745	ENSMUSG00000037458	Azin1	1700085L02Rik|AZI|Oazi|Oazin	antizyme inhibitor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-69981866-2	chr8	69981766	69981966	+	735.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286450, intron 1 of 12)	intron (NM_001286450, intron 1 of 12)	-7483.0	NM_001113346	234366.0	Mm.270044	NM_145596	ENSMUSG00000036180	Gatad2a	1110066C11Rik|BC031407|C80248	GATA zinc finger domain containing 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-83331811-3	chr8	83331771	83331971	+	724.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170691, intron 1 of 8)	intron (NM_001170691, intron 1 of 8)	615.0	NM_001170691	244548.0	Mm.38762	NM_178736	ENSMUSG00000035151	Elmod2	9830169G11Rik	ELMO/CED-12 domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-142142596-2	chr2	142142496	142142696	+	655.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013802, intron 8 of 18)	intron (NM_001013802, intron 8 of 18)	758868.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124821002-2	chr6	124820902	124821102	+	767.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013700, intron 11 of 19)	intron (NM_013700, intron 11 of 19)	-6706.0	NM_009415	21991.0	Mm.4222	NM_009415	ENSMUSG00000023456	Tpi1	AI255506|TIM|Tpi|Tpi-1	triosephosphate isomerase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-25086409-3	chr5	25086306	25086506	+	831.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145401, intron 1 of 15)	MIRb|SINE|MIR	14236.0	NM_145401	108099.0	Mm.33649	NM_145401	ENSMUSG00000028944	Prkag2	2410051C13Rik|AAKG|AAKG2|AI854673|H91620p|WPWS	protein kinase, AMP-activated, gamma 2 non-catalytic subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-145231929-4	chr4	145231821	145232021	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011610, intron 1 of 9)	intron (NM_011610, intron 1 of 9)	14949.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-120454845-4	chr6	120454742	120454942	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E-int|LTR|ERVL-MaLR	-8355.0	NM_008359	16172.0	Mm.4481	NM_008359	ENSMUSG00000002897	Il17ra	AW538159|Cdw217|Il17r|VDw217	interleukin 17 receptor A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-8695570-2	chr19	8695470	8695670	+	604.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18327.0	NM_008577	17254.0	Mm.4114	NM_008577	ENSMUSG00000010095	Slc3a2	4F2|4F2HC|AI314110|Cd98|Ly-10|Ly-m10|Ly10|Mdu1|Mgp-2hc|NACAE	solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70509007-1	chr8	70508907	70509107	+	662.0	f1_c57bl6.idr	intron (NM_001348227, intron 3 of 3)	B1F|SINE|Alu	938.0	NM_001348229	22186.0	Mm.297372	NM_019883	ENSMUSG00000090137	Uba52	Cep52|D8Ertd21e|Gm1863|Rps27a|Ubb|Ubc	ubiquitin A-52 residue ribosomal protein fusion product 1	protein-coding	1.23551864894392	0.932097964216282	1.58758335469142	0.672495807765709	1.13040028541646	0.700688357529364	0.686652206480848	1.86969075542041	0.199856803938488	0.893888203474826	0.998431161219273
Merged-chr11-83664340-3	chr11	83664190	83664390	+	584.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013652, intron 2 of 2)	intron (NM_013652, intron 2 of 2)	1706.0	NM_013652	20303.0	Mm.244263	NM_013652	ENSMUSG00000018930	Ccl4	AT744.1|Act-2|MIP-1B|Mip1b|Scya4	chemokine (C-C motif) ligand 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-108447206-4	chr5	108447110	108447310	+	968.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172883, intron 1 of 9)	intron (NM_172883, intron 1 of 9)	1890.0	NM_001359977	243197.0	Mm.106818	NM_172883	ENSMUSG00000029490	Mfsd7a	4732482E20Rik|Mfsd7|Slc49a3	major facilitator superfamily domain containing 7A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-113987547-2	chr5	113987447	113987647	+	579.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198109, intron 2 of 14)	BGLII_B|LTR|ERVK	6210.0	NM_198109	231637.0	Mm.389682	NM_198109	ENSMUSG00000042121	Ssh1	AW551225|Gm1394|Gm1395|SSH-1|SSH-1L	slingshot protein phosphatase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-142339186-4	chr6	142339090	142339290	+	952.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6507.0	NM_183165	232491.0	Mm.490474	NM_183165	ENSMUSG00000041671	Pyroxd1	-	pyridine nucleotide-disulphide oxidoreductase domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-74018896-2	chr17	74018796	74018996	+	760.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_053188, intron 4 of 4)	intron (NM_053188, intron 4 of 4)	29020.0	NM_053188	94224.0	Mm.38933	NM_053188	ENSMUSG00000038541	Srd5a2	5ART2|S5AR 2	steroid 5 alpha-reductase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116000345-1	chr11	116000245	116000445	+	1000.0	f1_balb.idr	exon (NM_133663, exon 29 of 39)	exon (NM_133663, exon 29 of 39)	-6630.0	NR_152190	100038636.0	Mm.450138	NR_152190		B230344G16Rik	-	RIKEN cDNA B230344G16 gene	ncRNA	-0.191486889690724	-0.159887462873449	0.0778691827220996	1.41753774206305	-0.189430621342012	0.11326838812815	-0.167697922447983	-0.176486485484727	-3.64472032545602	0.0830461767343295	1
Merged-chr10-42761505-4	chr10	42761389	42761589	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153055)	promoter-TSS (NM_153055)	-7.0	NM_001359283	140740.0	Mm.214344	NM_153055	ENSMUSG00000019802	Sec63	5730478J10Rik|AI649014|AW319215	SEC63-like (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3310051-4	chr12	3309946	3310146	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016676)	promoter-TSS (NM_016676)	-77.0	NM_016676	19325.0	Mm.378993	NM_016676	ENSMUSG00000020671	Rab10	AW107754	RAB10, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-26041518-4	chr16	26041431	26041631	+	978.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173379, intron 1 of 14)	intron (NM_173379, intron 1 of 14)	64253.0	NM_173379	210530.0	Mm.326869	NM_173379	ENSMUSG00000038168	P3h2	4832416N06|AW553532|Leprel1|Mlat4	prolyl 3-hydroxylase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-147343210-2	chr4	147343110	147343310	+	794.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039209, intron 1 of 2)	intron (NM_001039209, intron 1 of 2)	167344.0	NM_001039209	195531.0	Mm.270762	NM_001039209	ENSMUSG00000078496	Zfp982	Gm13152	zinc finger protein 982	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-73880661-4	chr12	73880576	73880776	+	999.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20648.0	NM_001313920	15251.0	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-69732242-1	chr14	69732142	69732342	+	934.0	f0_balb.idr	promoter-TSS (NR_130166)	promoter-TSS (NR_130166)	328.0	NM_134078	105513.0	Mm.159637	NM_134078	ENSMUSG00000034190	Chmp7	4930596K11Rik|6330407G04Rik|AI450338|AW550775	charged multivesicular body protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-97593878-3	chr15	97593784	97593984	+	673.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	111938.0	NM_028003	71919.0	Mm.12255	NM_028003	ENSMUSG00000022466	Rpap3	2310042P20Rik|D15Ertd682e	RNA polymerase II associated protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-72104710-3	chr12	72104616	72104816	+	907.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028687, intron 19 of 20)	intron (NM_028687, intron 19 of 20)	18877.0	NM_024205	104771.0	Mm.258935	NM_024205	ENSMUSG00000005078	Jkamp	1200003C05Rik|2310047L11Rik|Jamp	JNK1/MAPK8-associated membrane protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-45096178-3	chr2	45096083	45096283	+	599.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_149354, exon 3 of 3)	non-coding (NR_149354, exon 3 of 3)	14094.0	NM_001289521	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-36949068-2	chr5	36948968	36949168	+	754.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360003, intron 7 of 8)	intron (NM_001360003, intron 7 of 8)	39914.0	NM_011716	22393.0	Mm.20916	NM_011716	ENSMUSG00000039474	Wfs1	AI481085|wolframin	wolframin ER transmembrane glycoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-162932042-4	chr2	162931907	162932107	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026499, exon 2 of 6)	exon (NM_026499, exon 2 of 6)	499.0	NM_026499	67996.0	Mm.24042	NM_026499	ENSMUSG00000016921	Srsf6	1210001E11Rik|AI314910|AW146126|Sfrs6	serine/arginine-rich splicing factor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-3330881-4	chr8	3330786	3330986	+	946.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22529.0	NM_001033378	319493.0	Mm.234565	NM_001033378	ENSMUSG00000074497	A430078G23Rik	-	RIKEN cDNA A430078G23 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28169917-8	chr7	28169841	28170041	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007991, intron 1 of 8)	CpG	193.0	NM_007991	14113.0	Mm.4595	NM_007991	ENSMUSG00000046865	Fbl	AL022665|FIB|FLRN|RNU3IP1	fibrillarin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-13273491-2	chr2	13273391	13273591	+	844.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2076.0	NM_009105	20163.0	Mm.905	NM_009105	ENSMUSG00000026727	Rsu1	RsuI|rsp-1	Ras suppressor protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-49101673-4	chr11	49101558	49101758	+	802.587524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR12G|LTR|ERVK	12099.0	NM_146337	258334.0	Mm.390388	NM_146337	ENSMUSG00000047511	Olfr1396	MOR276-2	olfactory receptor 1396	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-23851401-3	chr5	23851301	23851501	+	858.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028536)	promoter-TSS (NR_028536)	804.0	NR_045040	67194.0	Mm.423733	NR_045040	ENSMUSG00000097180	2700038G22Rik	-	RIKEN cDNA 2700038G22 gene	ncRNA	0.556140952871345	-0.295211066751664	-0.299917602706291	-0.303553572624148	-0.0281710993237023	-0.0910081994039757	-0.298878955394117	-0.302918070884071	-1.33189180974535	0.585331095201521	1
Merged-chr14-70064046-2	chr14	70063946	70064146	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13399.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-62884401-3	chr17	62884283	62884483	+	846.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3066.0	NM_010109	13640.0	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-55077491-4	chr11	55077377	55077577	+	955.6083369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177471, intron 1 of 6)	intron (NM_177471, intron 1 of 6)	654.0	NM_177471	52570.0	Mm.22361	NM_177471	ENSMUSG00000049588	Ccdc69	2210021E03Rik|D11Ertd461e	coiled-coil domain containing 69	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-79711977-2	chr11	79711927	79712127	+	702.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029579)	promoter-TSS (NR_029579)	58.0	NR_029579	387188.0		NR_029579	ENSMUSG00000065395	Mir193a	Mir193|Mirn193|mir-193a|mmu-mir-193|mmu-mir-193a	microRNA 193a	ncRNA	0.615625841646054	0.187685295940822	0.182331393517815	0.578371721318988	0.625392830806905	0.188895012687242	0.183510458282377	0.58404885882047	0.0357661921942072	0.985775073860282	1
Merged-chr8-57595046-2	chr8	57594946	57595146	+	715.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001167981, intron 1 of 11)	intron (NM_001167981, intron 1 of 11)	-56707.0	NR_040698	100502619.0	Mm.393851	NR_040698		AW046200	-	expressed sequence AW046200	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-181255647-2	chr1	181255547	181255747	+	586.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43669.0	NM_145514	226757.0	Mm.289082	NM_145514	ENSMUSG00000038733	Wdr26	1600024A01Rik|AA693241|AI447817|AU044014|C77982|Gid7	WD repeat domain 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36559084-2	chr1	36558984	36559184	+	865.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001126047)	promoter-TSS (NM_001126047)	-703.0	NM_001126047	20353.0	Mm.29558	NM_001126047	ENSMUSG00000026121	Sema4c	AI426163|M-Sema F|Semacl1|Semaf|Semai|sema I	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129578728-4	chr4	129578647	129578847	+	968.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_182783)	promoter-TSS (NM_182783)	-167.0	NM_182783	230766.0	Mm.20377	NM_182783	ENSMUSG00000050493	Fam167b	SEC	family with sequence similarity 167, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-11456056-3	chr8	11455956	11456156	+	863.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011227, intron 1 of 1)	MTE2b|LTR|ERVL-MaLR	-21873.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-71832340-3	chr7	71832240	71832440	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-77355.0	NR_130995	78156.0	Mm.243818	NR_130995	ENSMUSG00000108669	4930441H08Rik	-	RIKEN cDNA 4930441H08 gene	ncRNA	2.43730323216366	2.82444824573628	3.38759314165483	2.91828853046876	5.01091636580366	4.9626804550736	5.20098541842535	4.52687000771825	2.76587644440552	5.35084056461908e-09	7.02912975485034e-07
Merged-chr13-111468055-2	chr13	111467955	111468155	+	675.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028487, intron 2 of 12)	L1M3|LINE|L1	22072.0	NM_028487	73274.0	Mm.57286	NM_028487	ENSMUSG00000032745	Gpbp1	1700034P14Rik|AU019836|D230035M11Rik|Gpbp|mGPBP	GC-rich promoter binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-34826437-3	chr19	34826326	34826526	+	897.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114339, intron 3 of 6)	intron (NM_001114339, intron 3 of 6)	-5653.0	NR_029783	723826.0		NR_029783	ENSMUSG00000065594	Mir107	Mirn107|mir-107|mmu-mir-107	microRNA 107	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-120038549-7	chr6	120038420	120038620	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001199083, exon 1 of 28)	5' UTR (NM_001199083, exon 1 of 28)	135.0	NM_001185020	232341.0	Mm.333349	NM_198703	ENSMUSG00000045962	Wnk1	6430573H23Rik|EG406236|Hsn2|Prkwnk1|mKIAA0344	WNK lysine deficient protein kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171234399-4	chr1	171234299	171234499	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010185)	promoter-TSS (NM_010185)	-50.0	NM_010185	14127.0	Mm.22673	NM_010185	ENSMUSG00000058715	Fcer1g	AI573376|CD23|FcR-gamma|FcR[g]|FcRgamma|Fce1g|FcepsilonRI|Ly-50	Fc receptor, IgE, high affinity I, gamma polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-60566859-4	chr1	60566760	60566960	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001045513)	promoter-TSS (NM_001045513)	-95.0	NM_001045513	77300.0	Mm.440325	NM_001045513	ENSMUSG00000026014	Raph1	9430025M21Rik|C730009O10Rik|Lpd	Ras association (RalGDS/AF-6) and pleckstrin homology domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127605801-1	chr10	127605701	127605901	+	885.0	f1_c57bl6.idr	exon (NM_008512, exon 5 of 89)	exon (NM_008512, exon 5 of 89)	15347.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69093702-2	chr11	69093602	69093802	+	860.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	5174.0	NM_009497	22318.0	Mm.28643	NM_009497	ENSMUSG00000020894	Vamp2	Syb-2|Syb2|Vamp-2|sybII	vesicle-associated membrane protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-16183280-4	chr2	16183177	16183377	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310455, intron 35 of 38)	MER44D|DNA|TcMar-Tigger	-173027.0	NM_026162	67448.0	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80389564-2	chr7	80389451	80389651	+	913.666626	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001081454, exon 16 of 16)	3' UTR (NM_001081454, exon 16 of 16)	-1605.0	NM_010194	14159.0	Mm.48757	NM_010194	ENSMUSG00000053158	Fes	AI586313|BB137047|FPS|c-fes	feline sarcoma oncogene	protein-coding	3.34043149843379	3.1238901702068	4.20021203532544	4.03963637553339	3.51629898555412	3.14830793510395	4.46310937082731	3.69253737796108	0.0650923922319576	0.905377231214362	0.998431161219273
Merged-chr10-99252563-4	chr10	99252453	99252653	+	909.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10678.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-45241154-2	chr9	45241054	45241254	+	762.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001198971, intron 1 of 4)	intron (NM_001198971, intron 1 of 4)	25553.0	NR_106054	102466803.0		NR_106054	ENSMUSG00000098361	Mir7086	Gm27643|mmu-mir-7086	microRNA 7086	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-43319901-2	chr14	43319801	43320001	+	960.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27910.0	NM_027940	71826.0	Mm.335855	NM_027940	ENSMUSG00000095384	1700001F09Rik	Gm10377	RIKEN cDNA 1700001F09 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-63757159-5	chr9	63757120	63757320	+	822.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016769, intron 1 of 8)	CpG	774.0	NM_016769	17127.0	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-178338443-4	chr1	178338351	178338551	+	885.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016805)	promoter-TSS (NM_016805)	-636.0	NR_149827	51810.0	Mm.86589	NM_016805	ENSMUSG00000039630	Hnrnpu	AA408410|AI256620|AL024194|AL024437|AW557595|C86794|Hnrpu|SAFA|Sp120|hnRNP U	heterogeneous nuclear ribonucleoprotein U	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-118764159-4	chr7	118764069	118764269	+	987.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027815, intron 8 of 30)	RMER19B|LTR|ERVK	23898.0	NM_027815	71517.0	Mm.213298	NM_027815	ENSMUSG00000030982	9030624J02Rik	2610029J22Rik	RIKEN cDNA 9030624J02 gene	protein-coding	3.77806238208502	4.17411672729118	5.19515405767398	4.73755146083305	4.25714128969849	3.56531777926912	5.47173669533132	4.19656068577877	-0.0138465201309861	0.977584028064122	0.998431161219273
Merged-chr5-25100851-4	chr5	25100751	25100951	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027851)	promoter-TSS (NR_027851)	-124.0	NR_027851	67261.0	Mm.461781	NM_026059	ENSMUSG00000043833	2900005J15Rik	-	RIKEN cDNA 2900005J15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-31127584-3	chr7	31127485	31127685	+	803.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011322)	promoter-TSS (NM_011322)	-562.0	NM_011322	20266.0	Mm.1418	NM_011322	ENSMUSG00000019194	Scn1b	-	sodium channel, voltage-gated, type I, beta	protein-coding	0.912085262969534	1.03284375671989	0.994204874825163	0.630930219085378	0.781721676802189	1.19107021706537	1.56316086063165	0.815508073109173	1.10406713191303	0.436381281371182	0.908195930350688
Merged-chr12-51593552-2	chr12	51593452	51593652	+	972.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_007728, exon 1 of 11)	5' UTR (NM_007728, exon 1 of 11)	211.0	NM_001198835	12810.0	Mm.21325	NM_007728	ENSMUSG00000020953	Coch	AW122937|Coch-5B2|D12H14S564E	cochlin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-63386990-2	chr4	63386890	63387090	+	570.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001045514, intron 5 of 21)	intron (NM_001045514, intron 5 of 21)	11250.0	NM_001305432	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-58302416-8	chr11	58302331	58302531	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4638.0	NM_182996	103836.0	Mm.41440	NM_182996	ENSMUSG00000037243	Zfp692	AI746306|AI839920|Zfp692-ps|Znf692	zinc finger protein 692	protein-coding	5.76925714975528	5.41704930388412	6.2221376531799	4.38268931563073	5.26661850119051	4.80187492473413	4.84193646717738	3.60378652258567	-0.983429469022347	0.0194118545831807	0.175997555130228
Merged-chr15-13371562-3	chr15	13371470	13371670	+	686.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-197895.0	NM_007666	12563.0	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-8857108-2	chr10	8856992	8857192	+	604.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 1 of 19)	Charlie13a|DNA|hAT-Charlie	28978.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-27480115-2	chr7	27480015	27480215	+	859.6666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	6275.0	NM_133210	170742.0	Mm.200120	NM_133210	ENSMUSG00000055200	Sertad3	AW124805|D1Mgi51|Rbt1|Sei3	SERTA domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-112236862-2	chr2	112236767	112236967	+	819.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR19|LTR|ERVK	-2974.0	NM_207206	99010.0	Mm.33438	NM_207206	ENSMUSG00000027134	Lpcat4	AI505034|Agpat7|Aytl3|LPEAT2	lysophosphatidylcholine acyltransferase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-108558069-2	chr6	108557969	108558169	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	65098.0	NR_040757	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-65784557-4	chr11	65784446	65784646	+	902.6749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316368, intron 1 of 10)	intron (NM_001316368, intron 1 of 10)	3813.0	NM_009157	26398.0	Mm.412922	NM_009157	ENSMUSG00000033352	Map2k4	JNKK1|MEK4|MKK4|PRKMK4|Sek1|Serk1	mitogen-activated protein kinase kinase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-55836775-4	chr12	55836677	55836877	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155205, intron 1 of 10)	CpG	411.0	NR_155205	52592.0	Mm.24761	NM_027867	ENSMUSG00000012076	Brms1l	0710008O11Rik|AI159718|BRMS1|D12Ertd407e	breast cancer metastasis-suppressor 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-34928148-2	chr18	34928048	34928248	+	658.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144866, intron 2 of 10)	intron (NM_144866, intron 2 of 10)	3855.0	NM_144866	225363.0	Mm.329353	NM_144866	ENSMUSG00000024360	Etf1	AI463371|D6Ertd109e|ERF|ERF1|SUP45L1|TB3-1	eukaryotic translation termination factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-81295395-3	chr7	81295307	81295507	+	864.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008803, intron 5 of 21)	intron (NM_008803, intron 5 of 21)	49827.0	NM_009092	20068.0	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3059629-2	chr4	3059529	3059729	+	914.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CACAG)n|Simple_repeat|Simple_repeat	-112454.0	NM_001167534	100312470.0	Mm.480297	NM_001167534	ENSMUSG00000115072	Vmn1r2	Gm11776	vomeronasal 1 receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-164838839-2	chr2	164838739	164838939	+	740.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_011125)	TTS (NM_011125)	5066.0	NM_008906	19025.0	Mm.359633	NM_008906	ENSMUSG00000017760	Ctsa	AU019505|PPCA|Ppgb	cathepsin A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-67223233-2	chr7	67223133	67223333	+	635.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_131044)	promoter-TSS (NR_131044)	617.0	NM_001191051	75099.0	Mm.121691	NM_175215	ENSMUSG00000043831	Lysmd4	4930506D23Rik	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-77179062-2	chr18	77178962	77179162	+	629.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6785.0	NM_153124	225742.0	Mm.365178	NM_013666	ENSMUSG00000025425	St8sia5	ST8SiaV|Siat8e	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55581049-4	chr19	55580935	55581135	+	868.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360431, intron 8 of 8)	intron (NM_001360431, intron 8 of 8)	121169.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	-0.364251191293354	-0.347318640313464	0.657245719487499	-0.357095809750623	0.0663994109720124	-0.346084152470499	-0.35160376982475	-0.356347126572991	-1.71891832145932	0.504402881444113	1
Merged-chr19-21738349-2	chr19	21738249	21738449	+	593.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39991.0	NM_001033759	83921.0	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-90881122-2	chr5	90881022	90881222	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10123.0	NM_008176	14825.0	Mm.21013	NM_008176	ENSMUSG00000029380	Cxcl1	Fsp|Gro1|KC|Mgsa|N51|Scyb1|gro	chemokine (C-X-C motif) ligand 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-34771828-4	chr11	34771739	34771939	+	921.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033374, intron 1 of 51)	intron (NM_033374, intron 1 of 51)	12066.0	NM_033374	94176.0	Mm.380679	NM_033374	ENSMUSG00000020143	Dock2	AI662014|AW122239|CED-5|Hch|MBC	dedicator of cyto-kinesis 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-34761692-4	chr5	34761603	34761803	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010414)	promoter-TSS (NM_010414)	-37.0	NM_010414	15194.0	Mm.209071	NM_010414	ENSMUSG00000029104	Htt	AI256365|C430023I11Rik|Hd|Hdh|IT15	huntingtin	protein-coding	3.99999489128286	4.59039481556345	4.73467429492043	4.98534073721805	4.47017961762874	3.91883322317678	5.07645068245274	5.10123903602001	0.134194721903834	0.74161530434294	0.998431161219273
Merged-chr3-135580620-2	chr3	135580520	135580720	+	964.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	95009.0	NM_027288	110173.0	Mm.280536	NM_027288	ENSMUSG00000028164	Manba	2410030O07Rik|B930014J03Rik|Bmn	mannosidase, beta A, lysosomal	protein-coding	-0.643426114426009	-0.13603208644087	-0.63614878037246	-0.638886248565743	-0.642751148453361	-0.631796812660116	-0.635365850149794	-0.0959543066532267	0.158923990479681	0.956118735169945	1
Merged-chr3-19628746-4	chr3	19628638	19628838	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15722.0	NM_001081281	381485.0	Mm.35419	NM_001081281	ENSMUSG00000060913	Trim55	D830041C10Rik|Murf2|Rnf29	tripartite motif-containing 55	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-53416450-4	chr15	53416323	53416523	+	975.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2c|LINE|L2	-70240.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-62554998-3	chr11	62554883	62555083	+	889.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3252.0	NM_001313984	22187.0	Mm.371592	NM_011664	ENSMUSG00000019505	Ubb	AL033289|Rps27a|Uba52|Ubb2|Ubc	ubiquitin B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-121194294-3	chr5	121194190	121194390	+	788.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F2|SINE|Alu	-2893.0	NM_011202	19247.0	Mm.8681	NM_011202	ENSMUSG00000043733	Ptpn11	2700084A17Rik|AW536184|PTP1D|PTP2C|SAP-2|SH-PTP2|SH-PTP3|SHP-2|Shp2|Syp	protein tyrosine phosphatase, non-receptor type 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41830917-2	chr19	41830817	41831017	+	608.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008043, exon 1 of 1)	exon (NM_008043, exon 1 of 1)	947.0	NM_008043	14296.0	Mm.4573	NM_008043	ENSMUSG00000067199	Frat1	AW060382	frequently rearranged in advanced T cell lymphomas	protein-coding	1.74192958294686	2.47858445569445	2.57798757098725	1.4716159832375	2.12088475326994	2.49753078509314	2.30453299551087	1.23755675162242	-0.0774651124456531	0.938313826515508	0.998431161219273
Merged-chr15-31601003-2	chr15	31600903	31601103	+	991.6999509999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_007637, intron 1 of 10)	intron (NM_007637, intron 1 of 10)	536.0	NM_001348035	12465.0	Mm.282158	NM_007637	ENSMUSG00000022234	Cct5	CCT-epsilon|Ccte|TCP-1-epsilon|TCPE|mKIAA0098	chaperonin containing Tcp1, subunit 5 (epsilon)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31367745-2	chr14	31367645	31367845	+	748.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009796, intron 16 of 20)	RSINE1|SINE|B4	31107.0	NM_009796	12339.0	Mm.201535	NM_009796	ENSMUSG00000021893	Capn7	AU022319|PalBH	calpain 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180250829-2	chr1	180250729	180250929	+	552.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001128605, intron 1 of 10)	intron (NM_001128605, intron 1 of 10)	-4879.0	NM_011183	19165.0	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96237043-2	chr3	96236943	96237143	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	2084.0	NM_054045	97114.0	Mm.358797	NM_054045	ENSMUSG00000081058	Hist2h3c2	H3-614|H3.2-614|Hist2h3c2-ps|Hist2h3ca1|M32461	histone cluster 2, H3c2	protein-coding	1.56672063614395	1.08087801190337	2.59008586096585	2.35191866441491	0.992320710286433	1.08735117349408	2.61218979869868	1.95322723190896	-0.432922724484785	0.7220813708632	0.998431161219273
Merged-chr5-137533197-4	chr5	137533084	137533284	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010312, exon 1 of 10)	5' UTR (NM_010312, exon 1 of 10)	122.0	NM_010312	14693.0	Mm.30141	NM_010312	ENSMUSG00000029713	Gnb2	Gnb-2	guanine nucleotide binding protein (G protein), beta 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-62217447-4	chr10	62217344	62217544	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197996, intron 1 of 7)	intron (NM_197996, intron 1 of 7)	13774.0	NM_197996	70423.0	Mm.416781	NM_197996	ENSMUSG00000037031	Tspan15	1110036D12Rik|2700063A19Rik|AW048364|Tm4sf15	tetraspanin 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80582990-2	chr10	80582890	80583090	+	606.25	f1_balb.idr|f1_c57bl6.idr	TTS (NM_145421)	TTS (NM_145421)	-5694.0	NM_078477	118445.0	Mm.41513	NM_078477	ENSMUSG00000035397	Klf16	AI843742|BTEB4|DRRF	Kruppel-like factor 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-72441290-4	chr11	72441207	72441407	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016776)	promoter-TSS (NM_016776)	-20.0	NM_016776	18432.0	Mm.147946	NM_016776	ENSMUSG00000040463	Mybbp1a	AL024407|AU019902|P160|p160MBP|p67MBP	MYB binding protein (P160) 1a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-83693311-2	chr8	83693211	83693411	+	765.599976	f1_balb.idr|f1_c57bl6.idr	intron (NM_177262, intron 1 of 21)	B3A|SINE|B2	750.0	NM_001199593	320795.0	Mm.213000	NM_177262	ENSMUSG00000057672	Pkn1	DBK|F730027O18Rik|PAK1|PRK1|Pkn|Prkcl1|Stk3	protein kinase N1	protein-coding	1.11932241470359	0.855887490527529	1.47097749337787	1.42586714207418	1.25086554821161	0.858741175385926	1.48367356443666	1.63559259774557	0.394581364948298	0.76640771259374	0.998431161219273
Merged-chr5-138619751-4	chr5	138619664	138619864	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001044747)	promoter-TSS (NM_001044747)	-21.0	NM_001044747	24135.0	Mm.27575	NM_013844	ENSMUSG00000058291	Zfp68	KRAB3|KRAZ2|Zfp70|mszf22|mszf49	zinc finger protein 68	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-68580908-3	chr14	68580829	68581029	+	727.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021475, intron 1 of 13)	intron (NM_021475, intron 1 of 13)	1143.0	NM_021475	58860.0	Mm.36742	NM_021475	ENSMUSG00000022057	Adamdec1	2210414L24Rik|AI574231|Dcsn	ADAM-like, decysin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-120969701-4	chr1	120969607	120969807	+	996.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-117698.0	NR_038008	98452.0	Mm.131017	NR_038008	ENSMUSG00000097881	Celrr	AI848258|B230209K01Rik|Celr|Gm818	cerebellum expressed regulatory RNA	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-120586746-4	chr9	120586664	120586864	+	777.520874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9433.0	NR_073359	76100.0	Mm.48212	NR_073359	ENSMUSG00000052658	5830454E08Rik	-	RIKEN cDNA 5830454E08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-65406129-4	chr16	65406092	65406292	+	996.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-114437.0	NM_008849	18736.0	Mm.355440	NM_008849	ENSMUSG00000004842	Pou1f1	GHF-1|Hmp1|Pit-1|Pit1|Pit1-rs1|dw|dwarf	POU domain, class 1, transcription factor 1	protein-coding	3.02772125263484	3.05724383626542	3.683151297645	3.65084915533714	3.21836611897509	3.31129573208801	4.05731573171672	3.45744651420807	0.262657929293698	0.639946545153413	0.982599433509505
Merged-chr6-29277732-2	chr6	29277632	29277832	+	761.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-3409.0	NM_001101486	245884.0	Mm.33683	NM_001101486	ENSMUSG00000079652	Fam71f2	AI507611|GARI	family with sequence similarity 71, member F2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-64971664-2	chr16	64971564	64971764	+	606.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008310, intron 2 of 2)	MTD|LTR|ERVL-MaLR	119663.0	NM_178647	106143.0	Mm.10160	NM_178647	ENSMUSG00000054604	Cggbp1	AA960172|AL023996|AW045841	CGG triplet repeat binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-157133906-4	chr2	157133805	157134005	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001139520, intron 1 of 16)	BC1_Mm|scRNA|scRNA	1317.0	NM_001139520	56045.0	Mm.248478	NM_018851	ENSMUSG00000027639	Samhd1	E330031J07Rik|Mg11	SAM domain and HD domain, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-50112599-1	chr2	50112499	50112699	+	672.0	f0_balb.idr	intron (NM_177139, intron 1 of 4)	intron (NM_177139, intron 1 of 4)	46170.0	NM_177139	320343.0	Mm.130607	NM_177139	ENSMUSG00000050447	Lypd6	E130115E03Rik	LY6/PLAUR domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-22814456-4	chr8	22814359	22814559	+	872.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8805.0	NM_001122820	64933.0	Mm.390023	NM_029505	ENSMUSG00000031539	Ap3m2	5830445E16Rik|AP-3B	adaptor-related protein complex 3, mu 2 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-97659619-2	chr3	97659519	97659719	+	662.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_182997, intron 2 of 7)	intron (NM_182997, intron 2 of 7)	1407.0	NM_182997	108097.0	Mm.31175	NM_182997	ENSMUSG00000038205	Prkab2	5730553K21Rik|AW049591|BB124140	protein kinase, AMP-activated, beta 2 non-catalytic subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21125729-5	chr9	21125659	21125859	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205312, intron 3 of 24)	ID_B1|SINE|B4	5516.0	NM_018793	54721.0	Mm.20249	NM_018793	ENSMUSG00000032175	Tyk2	JTK1	tyrosine kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-57879384-4	chr9	57879299	57879499	+	926.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31587.0	NM_027086	69459.0	Mm.41735	NM_027086	ENSMUSG00000055720	Ubl7	2300004C15Rik	ubiquitin-like 7 (bone marrow stromal cell-derived)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59644857-2	chr15	59644757	59644957	+	636.099976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3797.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44084857-4	chr9	44084768	44084968	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198091)	promoter-TSS (NM_198091)	-52.0	NM_198091	53376.0	Mm.272770	NM_016808	ENSMUSG00000032010	Usp2	B930035K21Rik|Ubp41	ubiquitin specific peptidase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90903670-3	chr2	90903578	90903778	+	765.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026688, intron 2 of 6)	intron (NM_026688, intron 2 of 6)	1043.0	NM_026688	68349.0	Mm.30113	NM_026688	ENSMUSG00000005510	Ndufs3	0610010M09Rik|CI-30kD	NADH dehydrogenase (ubiquinone) Fe-S protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21030328-4	chr9	21030218	21030418	+	868.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023892, intron 2 of 2)	intron (NM_023892, intron 2 of 2)	945.0	NM_023892	78369.0	Mm.30220	NM_023892	ENSMUSG00000001014	Icam4	1810015M19Rik|Cd242|ICAM-4	intercellular adhesion molecule 4, Landsteiner-Wiener blood group	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-49102390-3	chr13	49102301	49102501	+	789.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290313, intron 3 of 29)	RMER16_Mm|LTR|ERVK	45927.0	NM_029361	75607.0	Mm.342723	NM_029361	ENSMUSG00000037989	Wnk2	1810073P09Rik|AW122246|ESTM15|X83337|mKIAA1760	WNK lysine deficient protein kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-4105843-2	chr8	4105734	4105934	+	662.583374	f0_balb.idr|f1_balb.idr	promoter-TSS (NM_026956)	promoter-TSS (NM_026956)	-70.0	NM_026956	69142.0	Mm.171061	NM_026956	ENSMUSG00000051906	Cd209f	1810029C22Rik|AI647041|SIGNR8	CD209f antigen	protein-coding	1.47310710254383	0.65430740868012	0.640829928888321	0.833678290934552	1.83464645924284	0.657308409789019	0.864406419874769	1.39377194661532	1.23665979122621	0.419801564840499	0.899498409000238
Merged-chr14-82550683-2	chr14	82550583	82550783	+	616.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2A1|LINE|L1	1524607.0	NR_153783	102635012.0	Mm.399509	NR_153783	ENSMUSG00000115043	Gm32455	-	predicted gene, 32455	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-85402937-4	chr6	85402842	85403042	+	840.2708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20944.0	NM_001007472	384452.0	Mm.347883	NM_001007472	ENSMUSG00000068302	Noto	Flh|MmNot|Not|tc	notochord homeobox	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-101070952-2	chr4	101070855	101071055	+	584.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_183024, intron 1 of 11)	intron (NM_183024, intron 1 of 11)	1917.0	NM_183024	242570.0	Mm.185636	NM_183024	ENSMUSG00000035275	Raver2	A430091O22Rik	ribonucleoprotein, PTB-binding 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-85574039-4	chr3	85573944	85574144	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144896)	promoter-TSS (NM_144896)	-85.0	NM_144896	229487.0	Mm.52275	NM_144896	ENSMUSG00000028085	Gatb	9430026F02Rik|Pet112|Pet112l	glutamyl-tRNA(Gln) amidotransferase, subunit B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-65515050-4	chr5	65514878	65515078	+	865.261902	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22143.0	NM_133697	68552.0	Mm.10709	NM_133697	ENSMUSG00000037822	Smim14	1110003E01Rik|1700127H04Rik|5430439C17Rik|MAd4	small integral membrane protein 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-31128061-4	chr6	31127877	31128077	+	707.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110471, intron 3 of 3)	intron (NR_110471, intron 3 of 3)	-64884.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-111864937-4	chr1	111864824	111865024	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081316)	promoter-TSS (NM_001081316)	-6.0	NM_001081316	319901.0	Mm.103468	NM_001081316	ENSMUSG00000038702	Dsel	9330132E09Rik|DS-epi2	dermatan sulfate epimerase-like	protein-coding	4.85480613947227	5.19240518923952	4.52745604203804	4.50601699154365	4.7942910203484	5.07415875799634	5.14393331123545	4.07351452482463	0.0365381333738238	0.921799220948504	0.998431161219273
Merged-chr2-53200706-4	chr2	53200594	53200794	+	952.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022989, intron 2 of 3)	intron (NM_022989, intron 2 of 3)	8610.0	NM_022989	65103.0	Mm.37623	NM_022989	ENSMUSG00000026960	Arl6ip6	2310057C01Rik|2610529A11Rik|Aip-6	ADP-ribosylation factor-like 6 interacting protein 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24205584-4	chr17	24205486	24205686	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173186)	promoter-TSS (NM_173186)	-24.0	NM_001163850	224617.0	Mm.301585	NM_173186	ENSMUSG00000036473	Tbc1d24	9630033P11|C530046L02Rik|mKIAA1171	TBC1 domain family, member 24	protein-coding	6.22898846450194	5.33951550240173	5.43872401323468	5.75347535537913	6.20402786804069	5.00550020294022	3.8811491316573	5.81922669388508	-0.284097052272088	0.474386223991816	0.926577946129404
Merged-chr6-34878175-4	chr6	34878073	34878273	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347101)	promoter-TSS (NM_001347101)	-108.0	NM_001135611	78412.0	Mm.248440	NM_199145	ENSMUSG00000046806	3110062M04Rik	AL023049|Cyren|Mri	RIKEN cDNA 3110062M04 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-8746387-2	chr10	8746286	8746486	+	626.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 10 of 19)	intron (NM_175155, intron 10 of 19)	139684.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	-0.289851946104314	-0.737899168765768	-0.740932179010924	-0.743264539078787	-0.280173431323445	-0.737213951634147	-0.740264187498491	-0.742857569821679	0.0418983010157508	0.98887086484455	1
Merged-chr19-17737812-2	chr19	17737712	17737912	+	633.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163144, intron 3 of 20)	Lx4A|LINE|L1	99820.0	NM_001163144	18552.0	Mm.3401	NM_001163144	ENSMUSG00000024713	Pcsk5	PC5|PC6|SPC6|b2b1549Clo|b2b585Clo	proprotein convertase subtilisin/kexin type 5	protein-coding	-0.159575428902353	-0.610187827292597	-0.613553296959403	-0.616142918686652	-0.062413005932852	-0.609427817933545	-0.612811884975486	-0.615690957529907	0.356090971337642	0.902258025932581	1
Merged-chr10-79986274-8	chr10	79986151	79986351	+	916.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 1 of 4)	B1_Mur3|SINE|Alu	-1991.0	NM_001003949	216157.0	Mm.29442	NM_001003949	ENSMUSG00000013858	Tmem259	AC087114.7gm2|ORF61|R32184_3|mFLJ00277	transmembrane protein 259	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-88651377-4	chr8	88651273	88651473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145857, intron 1 of 12)	MTB|LTR|ERVL-MaLR	4026.0	NM_145857	257632.0	Mm.222633	NM_145857	ENSMUSG00000055994	Nod2	ACUG|BLAU|CD|Card15|F830032C23Rik|IBD1|Nlrc2	nucleotide-binding oligomerization domain containing 2	protein-coding	6.15387205419897	5.45148765174909	5.81852776342647	6.06323033031231	5.72802301395486	5.58557520028451	6.02943711150217	5.81824399071797	-0.117795769289594	0.642057054958659	0.982599433509505
Merged-chr3-101775971-3	chr3	101775876	101776076	+	723.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	60247.0	NM_172295	242125.0	Mm.32900	NM_172295	ENSMUSG00000044313	Mab21l3	-	mab-21-like 3 (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81837267-2	chr15	81837131	81837331	+	913.783325	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21095.0	NM_020507	57259.0	Mm.323595	NM_020507	ENSMUSG00000048546	Tob2	2900090N22Rik|4930545K18Rik|AV071822|mKIAA1663	transducer of ERBB2, 2	protein-coding	-1.06932346315282	-1.04545378193536	-0.220844647149311	-1.06494782147003	-1.06867040657128	-1.04264807175102	-1.05547001227371	-1.06448932552894	-3.08190232315036	0.346744811462451	1
Merged-chr8-116634839-2	chr8	116634739	116634939	+	599.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029441, intron 1 of 6)	RLTR17B_Mm|LTR|ERVK	98152.0	NM_029441	75796.0	Mm.159575	NM_029441	ENSMUSG00000031758	Cdyl2	1700029M19Rik|4930453I21Rik|Gm20194	chromodomain protein, Y chromosome-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-90880647-2	chr5	90880547	90880747	+	996.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10598.0	NM_008176	14825.0	Mm.21013	NM_008176	ENSMUSG00000029380	Cxcl1	Fsp|Gro1|KC|Mgsa|N51|Scyb1|gro	chemokine (C-X-C motif) ligand 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-12488298-3	chr19	12488170	12488370	+	857.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172442, intron 2 of 8)	intron (NM_172442, intron 2 of 8)	13726.0	NM_172442	207521.0	Mm.247695	NM_172442	ENSMUSG00000039982	Dtx4	AI449438|BC044798|D930042H13|RNF155	deltex 4, E3 ubiquitin ligase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-99299432-2	chr14	99299332	99299532	+	942.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009769, intron 1 of 3)	CpG	741.0	NM_009769	12224.0	Mm.30262	NM_009769	ENSMUSG00000005148	Klf5	4930520J07Rik|Bteb2|CKLF|IKLF	Kruppel-like factor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-51452961-2	chr10	51452861	51453061	+	823.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1VL1|LINE|L1	-27651.0	NM_008147	14727.0	Mm.439661	NM_008147	ENSMUSG00000112023	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-37097590-1	chr6	37097490	37097690	+	677.5	f0_balb.idr	exon (NM_001081206, exon 4 of 34)	exon (NM_001081206, exon 4 of 34)	202386.0	NM_001081206	320127.0	Mm.119469	NM_001081206	ENSMUSG00000038665	Dgki	6430604M11Rik|C130010K08Rik	diacylglycerol kinase, iota	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-148279216-1	chr3	148279116	148279316	+	663.5	f0_balb.idr	Intergenic	Intergenic	675419.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	0.0295677222029458	0.0480474430841725	0.730297371179344	0.0373436064797245	0.0307265402658064	0.0494054779464338	0.638178051119242	0.482381809841795	0.46948622739363	0.831643513424932	1
Merged-chr11-17008693-4	chr11	17008604	17008804	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019549)	promoter-TSS (NM_019549)	14.0	NM_019549	56193.0	Mm.98232	NM_019549	ENSMUSG00000020120	Plek	2010300B13Rik	pleckstrin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-82534591-4	chr18	82534478	82534678	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025245, intron 3 of 3)	intron (NM_001025245, intron 3 of 3)	-19885.0	NM_001025258	17196.0	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-64790844-4	chr9	64790743	64790943	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-20168.0	NM_001162917	102442.0	Mm.222473	NM_176935	ENSMUSG00000053641	Dennd4a	AI115600|AI851943|F730015K02Rik	DENN/MADD domain containing 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30624092-4	chr2	30624001	30624201	+	836.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29057.0	NM_030137	78617.0	Mm.40413	NM_030137	ENSMUSG00000047363	Cstad	9530039B02Rik	CSA-conditional, T cell activation-dependent protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-138742229-4	chr3	138742102	138742302	+	858.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019571)	promoter-TSS (NM_019571)	-6.0	NR_121195	56224.0	Mm.31927	NM_019571	ENSMUSG00000028152	Tspan5	2810455A09Rik|4930505M03Rik|NET-4|Tm4sf9	tetraspanin 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-44029821-4	chr17	44029730	44029930	+	943.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357742, intron 4 of 4)	intron (NM_001357742, intron 4 of 4)	-48972.0	NM_001168620	83965.0	Mm.30145	NM_032003	ENSMUSG00000023960	Enpp5	AW061004|D17Abb1e|E-NPP 5	ectonucleotide pyrophosphatase/phosphodiesterase 5	protein-coding	2.05711149995609	1.26649562813665	1.22500522466585	2.70967743667561	3.24403890156368	2.91942066157715	1.23436826740798	2.80642801403212	1.54618907243465	0.142258118415257	0.588826899061493
Merged-chr15-100639993-2	chr15	100639893	100640093	+	549.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3053.0	NM_001033872	207818.0	Mm.26282	NM_174992	ENSMUSG00000053559	Smagp	-	small cell adhesion glycoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-76612590-2	chr12	76612490	76612690	+	694.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_013675, exon 16 of 36)	exon (NM_013675, exon 16 of 36)	-64665.0	NR_046044	100504549.0	Mm.440349	NR_046044	ENSMUSG00000112388	AI463170	-	expressed sequence AI463170	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-160598065-4	chr2	160597969	160598169	+	899.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47828.0	NM_009408	21969.0	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-73930153-2	chr17	73930053	73930253	+	796.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011723, intron 6 of 35)	L1_Mus3|LINE|L1	20043.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-84925061-2	chr15	84924961	84925161	+	648.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016714, intron 1 of 7)	intron (NM_016714, intron 1 of 7)	1633.0	NM_016714	18141.0	Mm.28379	NM_016714	ENSMUSG00000016619	Nup50	1700030K07Rik|AI413123|Npap60	nucleoporin 50	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-64754906-2	chr16	64754806	64755006	+	788.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16033.0	NM_026273	67609.0	Mm.212157	NM_026273	ENSMUSG00000059920	4930453N24Rik	AI649104|din	RIKEN cDNA 4930453N24 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-90744715-3	chr16	90744562	90744762	+	574.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029844, intron 1 of 2)	intron (NM_029844, intron 1 of 2)	6338.0	NM_029844	77037.0	Mm.22455	NM_029844	ENSMUSG00000039956	Mrap	1110025G12Rik|C21ORF61|Falp|ORF61	melanocortin 2 receptor accessory protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-142098525-4	chr4	142098438	142098638	+	990.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14234.0	NM_145402	214359.0	Mm.27587	NM_145402	ENSMUSG00000040616	Tmem51	BC003277	transmembrane protein 51	protein-coding	-0.734697168562934	-1.28094420828655	-1.29131886204401	-1.29984091153697	-1.31008363841169	-1.2786959775384	-1.28897026783925	-1.29831546875223	-2.42902550944018	0.482518537989684	1
Merged-chr6-113438802-2	chr6	113438702	113438902	+	654.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3042.0	NM_178373	14311.0	Mm.10026	NM_178373	ENSMUSG00000030278	Cidec	CIDE-3|Fsp27	cell death-inducing DFFA-like effector c	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-107773017-2	chr3	107772917	107773117	+	582.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12548.0	NM_001113529	12977.0	Mm.795	NM_007778	ENSMUSG00000014599	Csf1	C87615|Csfm|MCSF|op	colony stimulating factor 1 (macrophage)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-117906779-4	chr6	117906689	117906889	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166431)	promoter-TSS (NM_001166431)	7.0	NM_133834	98758.0	Mm.422979	NM_133834	ENSMUSG00000042079	Hnrnpf	4833420I20Rik|AA407306|Hnrpf	heterogeneous nuclear ribonucleoprotein F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-106193336-3	chr14	106193236	106193436	+	890.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	87138.0	NR_073203	212085.0	Mm.78128	NM_198601	ENSMUSG00000022113	Trim52	4921513B05Rik	tripartite motif-containing 52	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129580369-2	chr4	129580212	129580412	+	627.5	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-1732.0	NM_182783	230766.0	Mm.20377	NM_182783	ENSMUSG00000050493	Fam167b	SEC	family with sequence similarity 167, member B	protein-coding	1.88413661998584	2.26475015932942	2.64864419158848	1.61333359895524	2.16080856956612	2.28132214495981	2.84431907043162	2.83370423574947	0.905555944756309	0.288350563173925	0.793815200967874
Merged-chr10-37364690-4	chr10	37364585	37364785	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-225759.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-120424499-3	chr2	120424350	120424550	+	963.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172672, intron 6 of 23)	intron (NM_172672, intron 6 of 23)	-20334.0	NM_001110496	211499.0	Mm.260712	NM_173734	ENSMUSG00000033808	Tmem87a	A930025J12Rik	transmembrane protein 87A	protein-coding	0.921917559181536	0.763971902143137	0.565833022400822	0.980779700402041	1.02892842864813	1.06928232225125	0.567570305765887	0.986868181271773	0.598441217628903	0.696955925574904	1
Merged-chr7-35123400-6	chr7	35123218	35123418	+	844.3541869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4025.0	NM_007678	12606.0	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-145808528-4	chr2	145808429	145808629	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028724, intron 2 of 12)	intron (NM_028724, intron 2 of 12)	22413.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-33241057-2	chr4	33240957	33241157	+	662.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	7730.0	NM_001033225	108767.0	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-53327950-2	chr19	53327850	53328050	+	939.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360348, intron 1 of 5)	intron (NM_001360348, intron 1 of 5)	-1463.0	NM_010847	17859.0	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-95386788-2	chr11	95386688	95386888	+	763.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016752, intron 3 of 8)	ID_B1|SINE|B4	1932.0	NM_001357797	110172.0	Mm.4593	NM_016752	ENSMUSG00000020873	Slc35b1	UGTrel1|Ugalt2	solute carrier family 35, member B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70864917-4	chr8	70864857	70865057	+	995.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7949.0	NM_032397	84036.0	Mm.32074	NM_032397	ENSMUSG00000002908	Kcnn1	AI854248|KCa2.1|SK1	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1	protein-coding	2.60164615302468	1.85096854949974	2.91078438887069	3.19834126959397	2.42475126543771	2.58735864569642	2.93309723355626	2.42621257455583	-0.262538754456128	0.731266560477393	0.998431161219273
Merged-chr15-77236194-3	chr15	77236090	77236290	+	791.700012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053104, intron 1 of 13)	intron (NM_053104, intron 1 of 13)	9418.0	NM_001358772	93686.0	Mm.202774	NM_053104	ENSMUSG00000033565	Rbfox2	Fbm2|Fxh|Hrnbp2|Rbm9	RNA binding protein, fox-1 homolog (C. elegans) 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-35019023-3	chr12	35018973	35019173	+	704.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28116.0	NM_001014973	217463.0	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	3.0844162657605	3.531477929759	1.88615873918515	2.79484511468374	3.48334431128445	2.41396776400989	3.64164834954864	2.80971571961127	0.394135229544239	0.583068964093446	0.966599221005409
Merged-chr4-9656871-2	chr4	9656771	9656971	+	663.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290367, intron 1 of 22)	intron (NM_001290367, intron 1 of 22)	12291.0	NM_023066	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-35607909-1	chr12	35607809	35608009	+	556.0	f0_balb.idr	Intergenic	Intergenic	-72920.0	NM_001314027	11622.0	Mm.341377	NM_013464	ENSMUSG00000019256	Ahr	Ah|Ahh|Ahre|In|bHLHe76	aryl-hydrocarbon receptor	protein-coding	-0.359411012073373	-0.346602611910849	-0.174514457640593	-0.354041843415033	-0.358612801594354	0.152690757887006	0.225070173754299	-0.353476371233917	2.73025648128864	0.272143334020273	1
Merged-chr12-82163239-2	chr12	82163139	82163339	+	665.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR33A_|LTR|ERVL	-6777.0	NM_001167983	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-88437659-2	chr9	88437559	88437759	+	994.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359958, intron 1 of 28)	intron (NM_001359958, intron 1 of 28)	1292.0	NM_001359958	244962.0	Mm.439873	NM_172926	ENSMUSG00000032422	Snx14	B830022K16|C330035N22Rik|YR-14	sorting nexin 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55229316-2	chr19	55229216	55229416	+	563.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081076, intron 6 of 20)	intron (NM_001081076, intron 6 of 20)	11920.0	NM_001081076	73707.0	Mm.489987	NM_001081076	ENSMUSG00000055523	Gucy2g	2410077I05Rik|GC-G	guanylate cyclase 2g	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80571639-2	chr10	80571539	80571739	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_078477, intron 1 of 1)	intron (NM_078477, intron 1 of 1)	5657.0	NM_078477	118445.0	Mm.41513	NM_078477	ENSMUSG00000035397	Klf16	AI843742|BTEB4|DRRF	Kruppel-like factor 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120800239-4	chr11	120800134	120800334	+	993.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3839.0	NM_026824	68730.0	Mm.180622	NM_026824	ENSMUSG00000025155	Dus1l	1110032N12Rik	dihydrouridine synthase 1-like (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-89415943-3	chr7	89415859	89416059	+	888.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10347.0	NR_102276	101521.0	Mm.26902	NR_102276	ENSMUSG00000109311	AI314278	-	expressed sequence AI314278	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100021845-2	chr7	100021745	100021945	+	565.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291320, intron 3 of 10)	(CAGAGA)n|Simple_repeat|Simple_repeat	11927.0	NM_001291320	69121.0	Mm.285295	NM_133709	ENSMUSG00000030732	Chrdl2	1810022C01Rik|Chl2	chordin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-84317467-3	chr12	84317380	84317580	+	729.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252582, intron 1 of 7)	CpG	621.0	NM_001252583	52708.0	Mm.255150	NM_144833	ENSMUSG00000042472	Zfp410	Apa1|D12Ertd748e|Znf410	zinc finger protein 410	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55921433-3	chr19	55921240	55921440	+	836.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142920, intron 11 of 11)	intron (NM_001142920, intron 11 of 11)	26019.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-79141289-4	chr15	79141193	79141393	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310579)	promoter-TSS (NM_001310579)	-32.0	NM_027231	69833.0	Mm.279861	NM_027231	ENSMUSG00000033020	Polr2f	1810060D16Rik|RPB6	polymerase (RNA) II (DNA directed) polypeptide F	protein-coding	0.90614709343549	0.655218482065695	1.11776894411868	0.955519954051223	1.13141893247485	1.41218455472584	0.835698592884718	0.813757979210519	0.758512091548769	0.591511123161119	1
Merged-chr13-5869501-2	chr13	5869401	5869601	+	658.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011803, exon 4 of 4)	3' UTR (NM_011803, exon 4 of 4)	8012.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-103861155-1	chr7	103861055	103861255	+	685.333313	f0_balb.idr	Intergenic	Intergenic	-7948.0	NM_008221	15135.0	Mm.440164	NM_008221	ENSMUSG00000052187	Hbb-y	Ey|Hby	hemoglobin Y, beta-like embryonic chain	protein-coding	1.33342585981218	1.04385019631272	1.8548255603031	1.79896324481464	2.0648636826233	1.04826568406693	1.4482029899176	2.17861723275514	0.666348990034905	0.577894292413901	0.96585843058813
Merged-chr2-91487540-2	chr2	91487440	91487640	+	875.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_172668, intron 19 of 37)	B2_Mm2|SINE|B2	30009.0	NM_001145857	228357.0	Mm.275149	NM_172668	ENSMUSG00000027253	Lrp4	6430526J12Rik|D230026E03|Megf7|mdig	low density lipoprotein receptor-related protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-124054600-1	chr9	124054500	124054700	+	568.666687	f0_balb.idr	Intergenic	Intergenic	32629.0	NM_009914	12771.0	Mm.57050	NM_009914	ENSMUSG00000035448	Ccr3	CC-CKR3|CKR3|Cmkbr1l2|Cmkbr3	chemokine (C-C motif) receptor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-80960030-4	chr13	80959922	80960122	+	785.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4052.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-29004474-1	chr7	29004374	29004574	+	546.0	f1_c57bl6.idr	exon (NM_009109, exon 104 of 106)	exon (NM_009109, exon 104 of 106)	21620.0	NM_008279	26411.0	Mm.148278	NM_008279	ENSMUSG00000037337	Map4k1	Hpk1|mHPK1	mitogen-activated protein kinase kinase kinase kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-32990802-4	chr19	32990703	32990903	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-166309.0	NR_039552	100628575.0		NR_039552	ENSMUSG00000106278	Mir3970	mmu-mir-3970|mu-mir-3970	microRNA 3970	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-78481766-4	chr9	78481713	78481913	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010106)	promoter-TSS (NM_010106)	-89.0	NM_010106	13627.0	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102454758-2	chr12	102454653	102454853	+	922.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-14381.0	NM_001199004	27277.0	Mm.273370	NM_013747	ENSMUSG00000021192	Golga5	Ret-II	golgi autoantigen, golgin subfamily a, 5	protein-coding	0.6676292660121	0.613643592551079	0.406238881150481	0.715248175632882	0.674798610843476	1.2678340276417	0.407971330444367	0.72018579496311	1.18806041562312	0.464320340555386	1
Merged-chr15-83154596-2	chr15	83154496	83154696	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_029787, exon 9 of 9)	exon (NM_029787, exon 9 of 9)	4951.0	NR_004432	104307.0	Mm.471434	NR_004432	ENSMUSG00000065176	Rnu12	-	RNA U12, small nuclear	snRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-108146159-4	chr3	108146107	108146307	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010306)	promoter-TSS (NM_010306)	-55.0	NM_010306	14679.0	Mm.271703	NM_010306	ENSMUSG00000000001	Gnai3	AI158965|AW537698|Galphai3|Gnai-3	guanine nucleotide binding protein (G protein), alpha inhibiting 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-126661192-4	chr3	126661077	126661277	+	982.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025438, intron 2 of 18)	intron (NM_001025438, intron 2 of 18)	64226.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	4.81331531512168	5.02366728144542	3.72243161692389	5.4572258978549	5.50858570245854	6.07897269353811	5.17684612831041	5.45516236460351	0.816978124751014	0.026238406872072	0.216674372172405
Merged-chr1-156719124-4	chr1	156719030	156719230	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145413)	promoter-TSS (NM_145413)	-220.0	NM_145413	215015.0	Mm.229107	NM_145413	ENSMUSG00000033557	Fam20b	C530043G21Rik|mKIAA0475	family with sequence similarity 20, member B	protein-coding	4.25894900810036	4.36152134464277	4.39158268406605	4.10780300645279	4.4973328042047	3.96057426825437	4.82993842928439	4.44533022458948	0.246859979414389	0.53318113825599	0.952082138848632
Merged-chr8-3620794-2	chr8	3620694	3620894	+	578.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001195244)	promoter-TSS (NM_001195244)	502.0	NM_026156	67439.0	Mm.23739	NM_026156	ENSMUSG00000019470	Xab2	0610041O14Rik|AV025587	XPA binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-3193184-4	chr11	3193200	3193400	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030207, intron 1 of 32)	CpG	163.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-13007766-4	chr18	13007662	13007862	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153087, intron 1 of 2)	intron (NM_153087, intron 1 of 2)	772.0	NM_153087	225192.0	Mm.207073	NM_153087	ENSMUSG00000037346	Hrh4	AXOR35|BG26|GPCR105|GPRv53|H4|H4R|HH4R	histamine receptor H4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81745105-4	chr15	81744964	81745164	+	854.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001081016, exon 1 of 23)	5' UTR (NM_001081016, exon 1 of 23)	216.0	NM_001081016	20286.0	Mm.432075	NM_001081016	ENSMUSG00000022390	Zc3h7b	Gm627|Scrg3|Zc2h7b|mKIAA1031	zinc finger CCCH type containing 7B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-16243308-4	chr14	16243212	16243412	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359883)	promoter-TSS (NM_001359883)	19.0	NM_001359883	71147.0	Mm.197960	NM_027695	ENSMUSG00000021786	Oxsm	4933425A18Rik|C80494	3-oxoacyl-ACP synthase, mitochondrial	protein-coding	3.58174060475281	1.45875492988241	2.89400555130254	2.71302975420733	2.48765910132588	3.28210861194865	1.42125498417039	2.50620978303989	-0.522238279479249	0.567190051443379	0.962562732139494
Merged-chr15-73069060-3	chr15	73068903	73069103	+	822.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7799.0	NM_001164643	76510.0	Mm.158902	NM_029640	ENSMUSG00000047921	Trappc9	1810044A24Rik|2900005P22Rik|4632408O18Rik|Ibp|Nibp|TRS130|mKIAA1882	trafficking protein particle complex 9	protein-coding	0.585991391234908	0.678051507054959	1.74886113877763	1.18305888796667	0.748490449643799	0.442651959903351	0.430655356355476	0.42022355605776	-3.25834371993411	0.0571022419195314	0.353483557798245
Merged-chr17-15376551-4	chr17	15376429	15376629	+	784.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007865)	promoter-TSS (NM_007865)	-706.0	NM_007865	13388.0	Mm.4875	NM_007865	ENSMUSG00000014773	Dll1	Delta1	delta like canonical Notch ligand 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-66950347-4	chr15	66950248	66950448	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008681, intron 3 of 15)	intron (NM_008681, intron 3 of 15)	19293.0	NM_008681	17988.0	Mm.30837	NM_008681	ENSMUSG00000005125	Ndrg1	CAP43|CMT4D|DRG1|HMSNL|NMSL|Ndr1|Ndrl|PROXY1|RTP|TDD5	N-myc downstream regulated gene 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-80690117-4	chr18	80690036	80690236	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198429, intron 2 of 9)	intron (NM_198429, intron 2 of 9)	18037.0	NM_001164111	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153122902-4	chr2	153122806	153123006	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001172117, intron 1 of 12)	intron (NM_001172117, intron 1 of 12)	14438.0	NM_010407	15162.0	Mm.715	NM_010407	ENSMUSG00000003283	Hck	AI849071|Bmk	hemopoietic cell kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25247012-2	chr7	25246912	25247112	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010155, intron 1 of 3)	intron (NM_010155, intron 1 of 3)	3746.0	NM_010155	13875.0	Mm.8068	NM_010155	ENSMUSG00000040857	Erf	-	Ets2 repressor factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-44786485-2	chr13	44786385	44786585	+	589.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205043, intron 1 of 17)	intron (NM_001205043, intron 1 of 17)	55214.0	NM_001205043	16468.0	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-75304666-4	chr18	75304571	75304771	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7342.0	NR_045393	100503117.0	Mm.250517	NR_045393	ENSMUSG00000102047	2010010A06Rik	5033420E22Rik	RIKEN cDNA 2010010A06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117317158-4	chr11	117317045	117317245	+	899.770874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113486, intron 3 of 11)	intron (NM_001113486, intron 3 of 11)	-14570.0	NM_017380	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-23984259-1	chr1	23984159	23984359	+	566.0	f1_balb.idr	Intergenic	Intergenic	21381.0	NM_026503	68002.0	Mm.250424	NM_026503	ENSMUSG00000026154	Sdhaf4	1110058L19Rik|1700001E18Rik|C6orf57	succinate dehydrogenase complex assembly factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-79612997-2	chr7	79612897	79613097	+	932.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019799, intron 1 of 10)	intron (NM_019799, intron 1 of 10)	4660.0	NM_019799	56315.0	Mm.10909	NM_019799	ENSMUSG00000030549	Rhcg	BB065800	Rhesus blood group-associated C glycoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-139235800-2	chr7	139235692	139235892	+	815.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027164, intron 8 of 10)	intron (NM_027164, intron 8 of 10)	-12690.0	NM_001033206	101631.0	Mm.334300	NM_001033206	ENSMUSG00000060260	Pwwp2b	AI594893|D7Ertd517e|D930023J19Rik|Pwwp2	PWWP domain containing 2B	protein-coding	1.1977743480345	1.24363616010943	1.05641222893823	0.87299320264403	0.842268977039344	1.6040723381338	0.702316759784242	1.03105729300016	0.0129793460589904	0.992484070527686	0.998431161219273
Merged-chr2-31670685-4	chr2	31670582	31670782	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144886)	promoter-TSS (NM_144886)	-33.0	NM_144886	227715.0	Mm.150972	NM_144886	ENSMUSG00000039356	Exosc2	Rrp4	exosome component 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-38341847-4	chr16	38341751	38341951	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081025)	promoter-TSS (NM_001081025)	9.0	NM_001081025	320214.0	Mm.294342	NM_177104	ENSMUSG00000022805	Maats1	4932425I24Rik|Aat1|CFAP91|Spata26	MYCBP-associated, testis expressed 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-33932783-2	chr17	33932694	33932894	+	612.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009059, intron 6 of 17)	intron (NM_009059, intron 6 of 17)	2900.0	NM_009059	19732.0	Mm.43777	NM_009059	ENSMUSG00000041354	Rgl2	KE1.5|Rab2l|Rgt2|Rlf	ral guanine nucleotide dissociation stimulator-like 2	protein-coding	-0.290792822991201	-0.274028028484528	-0.27948617478866	-0.283719770910831	0.234399717246101	-0.272802118054215	-0.278279547610063	0.66221457699774	3.93139925746095	0.110955754688977	1
Merged-chr7-6127261-4	chr7	6127157	6127357	+	942.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28714.0	NM_001013012	67109.0	Mm.3254	NM_001013012	ENSMUSG00000046792	Zfp787	2210018M03Rik|Znf787	zinc finger protein 787	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35202604-4	chr17	35202503	35202703	+	972.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001278601)	promoter-TSS (NM_001278601)	-596.0	NM_001278601	21926.0	Mm.1293	NM_013693	ENSMUSG00000024401	Tnf	DIF|TNF-a|TNF-alpha|TNFSF2|TNFalpha|Tnfa|Tnfsf1a|Tnlg1f	tumor necrosis factor	protein-coding	3.3383109499653	3.48143093181391	3.45310410366102	3.43744347917841	3.3651141868846	3.41178649776778	3.3932960897696	3.52828126249042	-0.00121003711322792	0.998168907674743	0.999477195380955
Merged-chr7-118438972-2	chr7	118438872	118439072	+	758.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001362179, intron 3 of 7)	intron (NM_001362179, intron 3 of 7)	4588.0	NM_001362180	110058.0	Mm.156558	NM_138649	ENSMUSG00000058420	Syt17	Bk|sytXVII	synaptotagmin XVII	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-90208877-4	chr9	90208776	90208976	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 11 of 12)	L1ME4b|LINE|L1	45898.0	NM_001311115	108153.0	Mm.102141	NM_001003911	ENSMUSG00000032363	Adamts7	ADAM-TS7|ADAMTS7B	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118650440-2	chr9	118650361	118650561	+	751.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 4 of 27)	ORR1A2|LTR|ERVL-MaLR	43752.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116985719-4	chr11	116985620	116985820	+	824.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172948, exon 17 of 17)	3' UTR (NM_172948, exon 17 of 17)	66857.0	NM_172948	268510.0	Mm.35141	NM_172948	ENSMUSG00000043857	Mgat5b	C330018B01|GnT-IX|mGnTVB	mannoside acetylglucosaminyltransferase 5, isoenzyme B	protein-coding	-1.13456716118723	-0.947542198900058	-1.12522166074545	-0.975309687160047	-1.13415369617385	-1.11230328855573	-0.956902081976189	-0.972816728592228	0.0348209584030901	0.990356462919784	1
Merged-chr10-14115176-4	chr10	14115067	14115267	+	936.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358783, intron 4 of 12)	Lx9|LINE|L1	148788.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	-1.13146769101922	-1.10460487238646	-1.11735372523027	-1.12713099301154	-1.13082009585647	-0.300663969208598	-1.11446766439333	-1.12595147812057	3.06518455575839	0.353555291099784	1
Merged-chr6-126702180-4	chr6	126702078	126702278	+	975.5750119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38496.0	NM_013568	16494.0	Mm.62535	NM_013568	ENSMUSG00000038077	Kcna6	Kv1.6|MK1.6	potassium voltage-gated channel, shaker-related, subfamily, member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-130000155-3	chr5	130000089	130000289	+	854.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357027, intron 2 of 2)	intron (NM_001357027, intron 2 of 2)	2860.0	NM_010368	110006.0	Mm.3317	NM_010368	ENSMUSG00000025534	Gusb	AI747421|Gur|Gus|Gus-r|Gus-s|Gus-t|Gus-u|Gut|asd|g	glucuronidase, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-121378943-2	chr5	121378843	121379043	+	585.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359947, intron 4 of 11)	intron (NM_001359947, intron 4 of 11)	6466.0	NM_001359947	231712.0	Mm.20488	NM_172275	ENSMUSG00000042726	Trafd1	1110008K06Rik|Fln29	TRAF type zinc finger domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-91180001-3	chr1	91179903	91180103	+	872.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_178401, exon 1 of 3)	5' UTR (NM_178401, exon 1 of 3)	181.0	NM_001168392	51801.0	Mm.3272	NM_016894	ENSMUSG00000034353	Ramp1	9130218E19Rik	receptor (calcitonin) activity modifying protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-24587478-1	chr1	24587378	24587578	+	621.0	f0_balb.idr	promoter-TSS (NM_007733)	promoter-TSS (NM_007733)	-41.0	NM_007733	12823.0	Mm.329196	NM_007733	ENSMUSG00000026141	Col19a1	-	collagen, type XIX, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-84802842-4	chr12	84802745	84802945	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013589, intron 16 of 34)	intron (NM_013589, intron 16 of 34)	29575.0	NM_028863	74316.0	Mm.25719	NM_028863	ENSMUSG00000021241	Isca2	0710001C05Rik|5730594E03Rik|Hbld1	iron-sulfur cluster assembly 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-140702756-4	chr4	140702720	140702920	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173867, intron 2 of 12)	CpG-10575	1347.0	NM_173867	108911.0	Mm.253	NM_173867	ENSMUSG00000040945	Rcc2	2610510H01Rik|2610529N02Rik|AA536646|AA675016|Td60|mKIAA1470	regulator of chromosome condensation 2	protein-coding	4.05704019070105	4.2655256050423	3.3860736757239	4.02565073025813	3.86222928908793	2.59284701155618	3.31597544922262	2.40798975937074	-1.15326759501287	0.0479833617172792	0.318068714852992
Merged-chr8-36998732-1	chr8	36998632	36998832	+	638.0	f0_balb.idr	intron (NR_126063, intron 2 of 2)	ORR1F|LTR|ERVL-MaLR	5157.0	NM_001039220	621080.0	Mm.373292	NM_001039220	ENSMUSG00000074384	AI429214	-	expressed sequence AI429214	protein-coding	0.573225054891043	0.445398789618687	0.436891232228904	0.430286509083917	0.93351823399682	1.21491411395324	1.04868192362678	0.75902627506725	3.70354402211768	0.0311960433768531	1
Merged-chr18-35873292-2	chr18	35873192	35873392	+	642.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	18605.0	NM_001357459	67393.0	Mm.94560	NM_133687	ENSMUSG00000046668	Cxxc5	4930415K17Rik	CXXC finger 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-25268586-4	chr15	25268480	25268680	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	145184.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-65101479-4	chr13	65101383	65101583	+	931.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083901, intron 2 of 12)	intron (NM_001083901, intron 2 of 12)	11499.0	NM_001083901	66631.0	Mm.239196	NM_133680	ENSMUSG00000038212	Mfsd14b	5730414C17Rik|AU045608|AW539692|Hiatl1	major facilitator superfamily domain containing 14B	protein-coding	0.499593720540004	1.20710367111146	0.521026987927231	0.855354628990926	0.810959401985832	0.933671192135376	0.523296959287444	1.48434214228682	0.869851967241464	0.591405685957232	0.969914559899697
Merged-chr4-156194672-1	chr4	156194572	156194772	+	634.0	f1_c57bl6.idr	intron (NM_021604, intron 2 of 35)	intron (NM_021604, intron 2 of 35)	2816.0	NM_021604	11603.0	Mm.273098	NM_021604	ENSMUSG00000041936	Agrn	Agrin|nmf380	agrin	protein-coding	1.76180951645301	0.795286674286447	0.780641814231759	1.7982390134488	1.08961404286652	1.65666381204341	0.78389449510508	1.14617099402469	-0.645771095714583	0.653062941792239	0.986583880083516
Merged-chr2-128067541-4	chr2	128067460	128067660	+	925.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028765, intron 14 of 17)	intron (NM_028765, intron 14 of 17)	-58478.0	NM_207681	12125.0	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-97338970-4	chr3	97338849	97339049	+	761.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	72230.0	NM_146275	258272.0	Mm.377406	NM_146275	ENSMUSG00000051392	Olfr1402	MOR217-1	olfactory receptor 1402	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-121796223-4	chr11	121796111	121796311	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34007.0	NM_029049	74675.0	Mm.61213	NM_029049	ENSMUSG00000039198	Ptchd3	4930451E13Rik|4933440L20Rik|RNDEu-3	patched domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141061029-6	chr7	141060958	141061158	+	721.222229	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177897)	promoter-TSS (NM_177897)	-216.0	NM_177897	330671.0	Mm.133741	NM_177897	ENSMUSG00000055629	B4galnt4	BC038881|Gm1095|beta4GalNAcT4	beta-1,4-N-acetyl-galactosaminyl transferase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-3157645-2	chr11	3157543	3157743	+	1000.0	f0_balb.idr|f1_balb.idr	intron (NM_030207, intron 11 of 32)	intron (NM_030207, intron 11 of 32)	33622.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-70650466-4	chr9	70650354	70650554	+	990.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172772, intron 1 of 8)	intron (NM_172772, intron 1 of 8)	6720.0	NM_172772	235461.0	Mm.170855	NM_172772	ENSMUSG00000042444	Mindy2	AI465301|B230380D07Rik|Fam63b|mKIAA1164	MINDY lysine 48 deubiquitinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27349128-3	chr2	27349026	27349226	+	837.577759	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_133905, intron 1 of 29)	intron (NR_133905, intron 1 of 29)	78482.0	NR_133905	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-5834563-2	chr13	5834463	5834663	+	641.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23529.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191250194-4	chr1	191250072	191250272	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25718.0	NR_151547	100504360.0	Mm.16927	NM_001033188		D730003I15Rik	AU020850	RIKEN cDNA D730003I15 gene	ncRNA	5.78252025739358	6.02988442497011	6.30195010273555	6.0642666834034	5.68985719037786	6.08798014852917	5.32606165362076	5.42728995187152	-0.437227669329206	0.0904545190998085	0.46458618157513
Merged-chr14-40902209-2	chr14	40902109	40902309	+	555.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9244.0	NM_177816	328381.0	Mm.235694	NM_177816	ENSMUSG00000037833	Sh2d4b	A430109M18Rik|D030001E08	SH2 domain containing 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-127206346-5	chr1	127206252	127206452	+	992.9933470000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145128, intron 1 of 17)	intron (NM_145128, intron 1 of 17)	1366.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-70844315-4	chr6	70844197	70844397	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010121)	promoter-TSS (NM_010121)	-218.0	NM_010121	13666.0	Mm.247167	NM_010121	ENSMUSG00000031668	Eif2ak3	Pek|Perk	eukaryotic translation initiation factor 2 alpha kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-64929253-2	chr13	64929152	64929352	+	804.083374	f0_balb.idr|f1_balb.idr	Intergenic	MurERV4-int|LTR|ERVK	11846.0	NM_030047	78124.0	Mm.342895	NM_030047	ENSMUSG00000056223	Spata31	4930458L03Rik|Aep1|Fam75a|Spata31a|Vad1.3	spermatogenesis associated 31	protein-coding	2.61238811059137	1.67976530984491	2.15830510460651	2.78766725505364	3.8142093621465	4.88933610015746	4.71081653444181	4.71603863393674	3.28396762310787	3.76808977716614e-08	3.78850903461782e-06
Merged-chr16-10987259-2	chr16	10987159	10987359	+	610.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019980, intron 1 of 3)	ID_B1|SINE|B4	5862.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-47715543-4	chr9	47715376	47715576	+	781.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	102732.0	NR_046048	100038460.0	Mm.447649	NR_046048		Gm10677	-	predicted gene 10677	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-82369867-1	chr8	82369767	82369967	+	591.0	f0_balb.idr	intron (NM_008357, intron 2 of 7)	intron (NM_008357, intron 2 of 7)	32719.0	NM_001254747	16168.0	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	1.16049727472888	0.757367848405137	1.27048084916295	0.734151813234617	1.28465798154164	1.59018047872076	1.72113566155445	0.735939797139966	1.58400367924271	0.275886927767869	0.77982362793126
Merged-chr9-63919170-2	chr9	63919070	63919270	+	792.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	102889.0	NM_008542	17130.0	Mm.325757	NM_008542	ENSMUSG00000036867	Smad6	Madh6|b2b390Clo	SMAD family member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-5469360-1	chr2	5469260	5469460	+	582.0	f0_balb.idr	intron (NM_001290375, intron 2 of 10)	intron (NM_001290375, intron 2 of 10)	89970.0	NR_030601	100124465.0		NR_030601	ENSMUSG00000078031	Mir466d	Mirn466d	microRNA 466d	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-40876931-4	chr4	40876906	40877106	+	927.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22469.0	NM_022305	14595.0	Mm.15622	NM_022305	ENSMUSG00000028413	B4galt1	B-1,4-GalT|B-1,4-GalT1|GalT|Ggtb|Ggtb2|b4Gal-T1|beta-1,4-GalT|beta-1,4-GalT1|beta4Gal-T1	UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52623268-2	chr13	52623168	52623368	+	764.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001198977, exon 6 of 14)	exon (NM_001198977, exon 6 of 14)	26386.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-92930735-1	chr5	92930635	92930835	+	844.0	f1_c57bl6.idr	intron (NM_001077596, intron 2 of 9)	intron (NM_001077596, intron 2 of 9)	32742.0	NM_001077596	27428.0	Mm.46014	NM_015756	ENSMUSG00000029381	Shroom3	AL022960|D5Ertd287e|Shrm|Shrm3	shroom family member 3	protein-coding	2.54354775266366	3.84872799674812	1.78013108704304	3.02366452033954	1.98328064434931	1.29693793624741	1.24995979872161	2.61137453732181	-2.13373866793981	0.025130360784054	0.209968014406045
Merged-chr9-96630866-6	chr9	96630706	96630906	+	998.694458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053268, intron 1 of 23)	CpG	697.0	NM_053268	114713.0	Mm.124502	NM_053268	ENSMUSG00000032413	Rasa2	5430433H21Rik|AA517451|AU023900|GAP1m	RAS p21 protein activator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-61441573-4	chr3	61441465	61441665	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	77058.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-11804630-4	chr19	11804530	11804730	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011502, intron 1 of 10)	intron (NM_011502, intron 1 of 10)	14773.0	NM_001286543	20908.0	Mm.272264	NM_011502	ENSMUSG00000041488	Stx3	Syn-3	syntaxin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-14864227-4	chr4	14864109	14864309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028264)	promoter-TSS (NM_028264)	-10.0	NM_028264	72519.0	Mm.279158	NM_028264	ENSMUSG00000028221	Tmem55a	2610319K07Rik|AI315591|AV001360|Pip4p2	transmembrane protein 55A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-9020422-4	chr3	9020312	9020512	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER89-int|LTR|ERV1	-15689.0	NM_001357075	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	7.01316981226027	6.76117633975586	6.73744983033062	6.63379018690149	6.96426795961465	6.84053682647053	6.3799347507351	6.54258514047271	-0.0989141334297355	0.614905110646551	0.977303445845731
Merged-chr11-75623526-2	chr11	75623426	75623626	+	763.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008850, intron 10 of 11)	RSINE1|SINE|B4	-7494.0	NM_008916	19062.0	Mm.1458	NM_008916	ENSMUSG00000006127	Inpp5k	C62|Pps|SKIP	inositol polyphosphate 5-phosphatase K	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-56797544-4	chr19	56797442	56797642	+	987.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_170757, exon 11 of 15)	exon (NM_170757, exon 11 of 15)	16141.0	NM_170757	213993.0	Mm.469677	NM_170757	ENSMUSG00000035173	Ccdc186	1810028B20Rik|A630007B06Rik|AI159700|Otg1	coiled-coil domain containing 186	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-66812703-4	chr15	66812608	66812808	+	998.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_009192, exon 2 of 9)	5' UTR (NM_009192, exon 2 of 9)	19121.0	NM_001029841	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-6056981-3	chr15	6056880	6057080	+	659.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12276.0	NR_155429	105245876.0	Mm.128197	NR_155428		Gm41259	-	predicted gene, 41259	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-55664849-1	chr1	55664749	55664949	+	738.0	f1_c57bl6.idr	intron (NM_001114663, intron 1 of 5)	intron (NM_001114663, intron 1 of 5)	258903.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-147584085-2	chr5	147583985	147584185	+	593.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010228, intron 20 of 29)	intron (NM_010228, intron 20 of 29)	141903.0	NM_010228	14254.0	Mm.389712	NM_010228	ENSMUSG00000029648	Flt1	AI323757|Flt-1|VEGFR-1|VEGFR1|sFlt1	FMS-like tyrosine kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-152756696-4	chr2	152756590	152756790	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053091, intron 2 of 4)	intron (NM_053091, intron 2 of 4)	2517.0	NM_053091	84682.0	Mm.196668	NM_053091	ENSMUSG00000009876	Cox4i2	Cox4b|CoxIV-2	cytochrome c oxidase subunit 4I2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-146501598-4	chr6	146501445	146501645	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019923, intron 1 of 56)	intron (NM_019923, intron 1 of 56)	678.0	NM_010586	16439.0	Mm.7800	NM_010586	ENSMUSG00000030287	Itpr2	AI649341|InsP3R-2|InsP3R-5|Ip3r2|Itpr5|insP3R2	inositol 1,4,5-triphosphate receptor 2	protein-coding	-0.947981310248532	-1.06986221617136	-1.08111523493323	-1.08767915324048	-0.521931119253548	-1.06742364006257	-1.07856779814469	-1.08733643431101	1.79154211409157	0.579573222034837	1
Merged-chr4-128984768-4	chr4	128984669	128984869	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8455.0	NM_016895	11637.0	Mm.29460	NM_016895	ENSMUSG00000028792	Ak2	Ak-2|D4Ertd220e	adenylate kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-23750288-3	chr18	23750192	23750392	+	873.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_126066)	TTS (NR_126066)	2013.0	NR_126066	100502834.0	Mm.213614	NR_126066	ENSMUSG00000086287	Gm15972	-	predicted gene 15972	ncRNA	-2.18292257394068	-2.15545247547656	-2.03304972317742	-2.17058342868585	-2.18099422382073	-2.1536522739386	-2.16187909550322	-2.16936197735154	-0.683654500252594	0.846597994014493	1
Merged-chr12-72408117-2	chr12	72407952	72408152	+	956.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_153457, intron 1 of 8)	intron (NM_153457, intron 1 of 8)	1002.0	NM_001286448	104001.0	Mm.221275	NM_153457	ENSMUSG00000021087	Rtn1	Nsp	reticulon 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-66110612-2	chr5	66110512	66110712	+	638.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001127382, intron 2 of 7)	intron (NM_001127382, intron 2 of 7)	-12433.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-31445646-3	chr3	31445542	31445742	+	916.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-135323.0	NM_172861	241919.0	Mm.285366	NM_172861	ENSMUSG00000069072	Slc7a14	A930013N06|BC061928	solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-98701266-2	chr7	98701166	98701366	+	571.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_144495, exon 1 of 1)	non-coding (NR_144495, exon 1 of 1)	1662.0	NR_144495	100040769.0	Mm.126401	NR_144495		Gm15506	-	predicted gene 15506	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59705820-4	chr15	59705742	59705942	+	929.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57188.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-88694275-2	chr4	88694175	88694375	+	589.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3007.0	NM_008336	15974.0	Mm.377093	NM_008336	ENSMUSG00000100079	Ifnab	-	interferon alpha B	protein-coding	-0.32326584982899	-0.562018396995413	-0.565186700011719	-0.0670434157368543	-0.317238376629306	-0.56130177911771	-0.564489428799003	-0.567194854344348	-1.53500505152074	0.569038873549166	1
Merged-chr7-19224594-1	chr7	19224494	19224694	+	588.0	f1_c57bl6.idr	TTS (NM_175668)	TTS (NM_175668)	-3795.0	NM_207525	403187.0	Mm.239583	NM_207525	ENSMUSG00000052214	Opa3	D630048P19Rik|Gm1425|Gm472	optic atrophy 3	protein-coding	0.786931040931888	0.31054501223184	0.490319764630027	0.618643005040459	0.288577175940642	0.519759601547972	0.304599334495777	1.2199478132694	0.527673113442438	0.767927755299321	1
Merged-chr11-116653833-2	chr11	116653733	116653933	+	971.666626	f1_balb.idr|f1_c57bl6.idr	exon (NM_030206, exon 1 of 4)	exon (NM_030206, exon 1 of 4)	480.0	NM_030206	114886.0	Mm.34598	NM_030206	ENSMUSG00000020810	Cygb	3110001K20Rik|HGb|Staap	cytoglobin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-24413004-2	chr16	24412904	24413104	+	860.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 1 of 12)	intron (NM_178665, intron 1 of 12)	-19349.0	NR_037954	68841.0	Mm.361995	NR_037954		Lppos	1110054M08Rik|AI481106	LIM domain containing preferred translocation partner in lipoma, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-54715125-3	chr14	54714974	54715174	+	885.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2900.0	NM_207131	110794.0	Mm.236223	NM_207131	ENSMUSG00000052435	Cebpe	C/EBPe|C/EBPepsilon|CRP1|Gm294	CCAAT/enhancer binding protein (C/EBP), epsilon	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-31042196-4	chr7	31042077	31042277	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001111073)	promoter-TSS (NM_001111073)	154.0	NM_008761	18301.0	Mm.1870	NM_008761	ENSMUSG00000009687	Fxyd5	EF-8|Oit2|RIC	FXYD domain-containing ion transport regulator 5	protein-coding	3.19256052177212	3.58104594558873	2.04740235361771	3.36550917259754	2.82606619495343	2.14490820827827	3.99448184603996	1.76063226668926	-0.276334597259757	0.729927773037334	0.998431161219273
Merged-chr9-20889810-2	chr9	20889710	20889910	+	792.166687	f1_balb.idr|f1_c57bl6.idr	exon (NM_145610, exon 5 of 11)	exon (NM_145610, exon 5 of 11)	1635.0	NM_145610	235036.0	Mm.2930	NM_145610	ENSMUSG00000004100	Ppan	A230087P06Rik|SSF1	peter pan homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36961032-4	chr1	36960915	36961115	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21488.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-100162980-1	chr3	100162880	100163080	+	1000.0	f1_c57bl6.idr	promoter-TSS (NM_175552)	promoter-TSS (NM_175552)	517.0	NR_104341	14547.0	Mm.279228	NM_010269	ENSMUSG00000027865	Gdap2	C77050|D3Ertd801e	ganglioside-induced differentiation-associated-protein 2	protein-coding	2.28312140530207	2.29916953081336	2.49297904969922	2.82014626286721	3.04282710695753	3.53418979996475	1.34763643718896	1.30715906392522	0.373658741731048	0.69879872486601	0.998284579433352
Merged-chr2-142700912-3	chr2	142700828	142701028	+	773.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355123, intron 23 of 26)	intron (NM_001355123, intron 23 of 26)	200536.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-117941887-2	chr2	117941787	117941987	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_126479, intron 8 of 9)	intron (NR_126479, intron 8 of 9)	119959.0	NR_040631	73938.0	Mm.399107	NR_040631	ENSMUSG00000086221	4930412B13Rik	-	RIKEN cDNA 4930412B13 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-97851592-11	chr16	97851498	97851698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144789)	promoter-TSS (NM_144789)	252.0	NM_001359078	114604.0	Mm.328741	NM_144789	ENSMUSG00000014039	Prdm15	C21orf83|E130018M06Rik|ORF62|Zfp298	PR domain containing 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-45001609-4	chr13	45001458	45001658	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025772, intron 1 of 9)	intron (NM_025772, intron 1 of 9)	538.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-118727950-2	chr5	118727847	118728047	+	545.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347445, intron 9 of 30)	intron (NM_001347445, intron 9 of 30)	167228.0	NM_172424	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	-0.366626417179347	-0.352692175281507	-0.357249875608969	0.28625245588711	-0.365754612910758	-0.35166575818681	-0.356244039914784	0.294119739107777	0.0282770312316891	0.991511101680898	1
Merged-chr2-167629833-5	chr2	167629795	167629995	+	798.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311131, intron 1 of 4)	intron (NM_001311131, intron 1 of 4)	2110.0	NM_001311146	66589.0	Mm.278783	NM_023230	ENSMUSG00000078923	Ube2v1	0610011J09Rik|AI256840|CROC-1|CROC1|D7Bwg1382e|UEV-1	ubiquitin-conjugating enzyme E2 variant 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-32876889-3	chr16	32876806	32877006	+	880.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027226)	promoter-TSS (NM_027226)	-878.0	NM_001356387	69823.0	Mm.12831	NM_027226	ENSMUSG00000022800	Fyttd1	2010005M05Rik|3830411L18Rik|3830421F13Rik|4933423A17Rik|AI098218|AW539567|C85190	forty-two-three domain containing 1	protein-coding	-0.277716632691544	-0.260520833034588	0.647551285089846	0.311559376532844	-0.2766327953964	-0.25926456231195	-0.264878838915051	-0.269697918263213	-3.90658949109006	0.112482708622185	1
Merged-chr2-165885234-1	chr2	165885134	165885334	+	647.0	f0_c57.idr	promoter-TSS (NM_001252584)	promoter-TSS (NM_001252584)	-396.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126830815-2	chr8	126830715	126830915	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18205.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-46924637-3	chr14	46924547	46924747	+	727.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037221, intron 2 of 12)	intron (NM_001037221, intron 2 of 12)	30281.0	NR_105813	102465206.0		NR_105813	ENSMUSG00000099036	Mir378c	Gm27930|mmu-mir-378c	microRNA 378c	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-110672420-2	chr5	110672320	110672520	+	695.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029337, intron 46 of 51)	intron (NM_029337, intron 46 of 51)	-6279.0	NR_105993	102466216.0		NR_105993	ENSMUSG00000099284	Mir7026	Gm27988|mmu-mir-7026	microRNA 7026	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-21022004-2	chr11	21021904	21022104	+	663.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69320.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114933753-4	chr11	114933615	114933815	+	907.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199221, intron 1 of 3)	intron (NM_199221, intron 1 of 3)	671.0	NM_001347651	217304.0	Mm.185355	NM_199221	ENSMUSG00000063193	Cd300lb	CLM-7|Clm7|Gm253|LMIR5	CD300 molecule like family member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-115697775-3	chr8	115697700	115697900	+	916.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9094.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-59216919-4	chr11	59216825	59217025	+	716.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007476, intron 1 of 4)	intron (NM_007476, intron 1 of 4)	8564.0	NM_024210	67862.0	Mm.358708	NM_024210	ENSMUSG00000020441	2310033P09Rik	Mmtag2	RIKEN cDNA 2310033P09 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-21370090-2	chr12	21369990	21370190	+	929.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291871, intron 1 of 18)	intron (NM_001291871, intron 1 of 18)	3542.0	NR_102380	11491.0	Mm.27681	NM_009615	ENSMUSG00000052593	Adam17	CD156b|Tace	a disintegrin and metallopeptidase domain 17	protein-coding	2.76854619583652	3.97363930337695	2.60533216931491	3.32223070222612	3.09063128755618	4.36796640790498	3.44603247498958	3.05627942602294	0.50137311573755	0.428392668200326	0.903416445927044
Merged-chr6-8770597-3	chr6	8770524	8770724	+	973.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010492, intron 1 of 13)	intron (NM_010492, intron 1 of 13)	7860.0	NM_010492	15893.0	Mm.275683	NM_010492	ENSMUSG00000062995	Ica1	69kDa|ICA69	islet cell autoantigen 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-75090025-3	chr15	75089933	75090133	+	940.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21904.0	NM_001357693	100041546.0	Mm.482110	NM_001099217	ENSMUSG00000022584	Ly6c2	Ly-6C.2|Ly-6C2	lymphocyte antigen 6 complex, locus C2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-145119100-2	chr5	145119000	145119200	+	827.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023142, intron 1 of 9)	B1_Mm|SINE|Alu	4844.0	NM_023142	11867.0	Mm.30010	NM_023142	ENSMUSG00000029622	Arpc1b	41kDa|AA408064|AA408534|AA571392|AF007010|AW208418|L72|SOP2Hs|p41-ARC	actin related protein 2/3 complex, subunit 1B	protein-coding	1.08652646852936	0.812186260785774	0.798613012151104	1.51191968797699	1.2230129071197	1.22755743492642	1.8584660811434	1.28911961224641	1.33795276548598	0.319640855759462	0.821951596143819
Merged-chr1-34839895-1	chr1	34839795	34839995	+	563.0	f0_balb.idr	intron (NM_001160236, intron 1 of 6)	intron (NM_001160236, intron 1 of 6)	3155.0	NM_174997	214469.0	Mm.120151	NM_174997	ENSMUSG00000037503	Fam168b	Mani|mKIAA4042	family with sequence similarity 168, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84978629-6	chr8	84978489	84978689	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_008416, exon 1 of 1)	5' UTR (NM_008416, exon 1 of 1)	159.0	NM_008416	16477.0	Mm.1167	NM_008416	ENSMUSG00000052837	Junb	-	jun B proto-oncogene	protein-coding	7.48185689602598	7.16183889333772	7.19105051488683	7.35269926106636	7.34466464899726	7.17751869620146	7.11193251897793	6.93389608638889	-0.163021216528139	0.3201327719633	0.822708767245968
Merged-chr1-182461510-3	chr1	182461404	182461604	+	863.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173378, intron 17 of 17)	intron (NM_173378, intron 17 of 17)	52337.0	NM_173378	209456.0	Mm.287450	NM_173378	ENSMUSG00000026510	Trp53bp2	53BP2|AI746547|ASPP2|PPP1R13A|Tp53bp2|X98550	transformation related protein 53 binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-65178337-4	chr1	65178233	65178433	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111320, intron 1 of 8)	intron (NM_001111320, intron 1 of 8)	809.0	NM_010497	15926.0	Mm.9925	NM_010497	ENSMUSG00000025950	Idh1	AI314845|AI788952|E030024J03Rik|Id-1|Idh-1|Idpc	isocitrate dehydrogenase 1 (NADP+), soluble	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-23710630-4	chr13	23710542	23710742	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010424, exon 1 of 6)	exon (NM_010424, exon 1 of 6)	212.0	NM_001347493	15216.0	Mm.2681	NM_010424	ENSMUSG00000006611	Hfe	MR2	hemochromatosis	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-63409390-4	chr14	63409269	63409469	+	861.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007549, intron 1 of 12)	intron (NM_007549, intron 1 of 12)	7818.0	NM_007549	12143.0	Mm.3962	NM_007549	ENSMUSG00000014453	Blk	-	B lymphoid kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-68362139-4	chr15	68362043	68362243	+	989.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20854.0	NR_029718	387228.0		NR_029718	ENSMUSG00000065437	Mir30d	Mirn30d|mir-30d|mmu-mir-30d	microRNA 30d	ncRNA	1.76204494154084	1.18903916689082	2.43757174668738	1.37116979562769	1.49699858859028	2.13125177296015	2.37064697230294	2.10225476797718	0.695465339215663	0.5107042875186	0.94512318675548
Merged-chr11-51927390-4	chr11	51927276	51927476	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40255.0	NM_029976	52626.0	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-20088002-4	chr16	20087912	20088112	+	917.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9542.0	NM_029436	75785.0	Mm.392450	NM_029436	ENSMUSG00000062901	Klhl24	1110046J11Rik|4930429H24Rik|6530402O20Rik|C85082	kelch-like 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-13683996-4	chr17	13683909	13684109	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-76532.0	NR_151731	17356.0	Mm.59167	NM_010806	ENSMUSG00000068036	Afdn	5033403D15Rik|AF6|Af-6|Afadin|Gm314|I-afadin|Mllt4|S-afadin	afadin, adherens junction formation factor	protein-coding	6.07645153098287	5.97370358811648	6.32459661272194	6.08259184117988	5.90662930882926	6.5467152243775	6.75170261101608	6.2755587706389	0.300792552458177	0.198776595346152	0.682185809772063
Merged-chr14-61309778-4	chr14	61309684	61309884	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177337)	promoter-TSS (NM_177337)	31.0	NM_177337	219144.0	Mm.206566	NM_177337	ENSMUSG00000043157	Arl11	ARLTS1|C730007L20Rik	ADP-ribosylation factor-like 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-108418814-2	chr11	108418714	108418914	+	617.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6452.0	NM_029606	76380.0	Mm.344071	NM_029586	ENSMUSG00000020728	Cep112	1700001M19Rik|1700029K01Rik|8430407H02Rik|AV043680|AV207351|Ccdc46|Macoco	centrosomal protein 112	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-36215563-2	chr2	36215463	36215663	+	883.3333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER77B|LTR|ERVL	-14863.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-7733286-4	chr6	7733187	7733387	+	929.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB7|LINE|L1	-40105.0	NM_012055	27053.0	Mm.2942	NM_012055	ENSMUSG00000029752	Asns	-	asparagine synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-55726400-4	chr17	55726289	55726489	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13753.0	NR_151542	72836.0	Mm.177073	NM_028370	ENSMUSG00000024174	Pot1b	2810458H16Rik	protection of telomeres 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-69690452-2	chr3	69690352	69690552	+	607.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31603.0	NM_133787	97112.0	Mm.21062	NM_133787	ENSMUSG00000027787	Nmd3	C87860	NMD3 ribosome export adaptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-114894276-3	chr7	114894160	114894360	+	785.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54390.0	NR_040317	101786.0	Mm.395157	NR_040317	ENSMUSG00000108379	A730082K24Rik	AU044236	RIKEN cDNA A730082K24 gene	ncRNA	-0.702784938084436	-0.691739208754689	-0.695355269558521	-0.698147005963179	-0.420076933939085	-0.690924479307445	-0.694557486181746	0.0486475199480811	3.3664245681717	0.232757276703936	1
Merged-chr14-102980030-4	chr14	102979939	102980139	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177715, exon 1 of 1)	3' UTR (NM_177715, exon 1 of 1)	2593.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-133856398-3	chr1	133856322	133856522	+	771.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50751.0	NM_054076	269120.0	Mm.59985	NM_054076	ENSMUSG00000010311	Optc	-	opticin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-24437501-2	chr18	24437401	24437601	+	705.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	-8331.0	NR_029573	387182.0		NR_029573	ENSMUSG00000065532	Mir187	Mirn187|mir-187|mmu-mir-187	microRNA 187	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67189160-3	chr10	67189072	67189272	+	694.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001242396, intron 1 of 24)	intron (NM_001242396, intron 1 of 24)	3422.0	NM_001242396	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-95852873-2	chr4	95852773	95852973	+	619.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113412, intron 14 of 15)	intron (NM_001113412, intron 14 of 15)	114162.0	NR_045777	319247.0	Mm.473527	NM_175680	ENSMUSG00000044125	9530080O11Rik	-	RIKEN cDNA 9530080O11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-97340665-4	chr13	97340558	97340758	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-94312.0	NR_110432	100039691.0	Mm.219358	NR_110430	ENSMUSG00000078952	Lncenc1	Gm11019|Gm2373|Lincenc1|Platr18|linc-Enc1	long non-coding RNA, embryonic stem cells expressed 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70572628-1	chr14	70572528	70572728	+	902.0	f0_balb.idr	3' UTR (NM_021877, exon 20 of 20)	3' UTR (NM_021877, exon 20 of 20)	-5196.0	NM_153136	213484.0	Mm.34191	NM_153136	ENSMUSG00000045211	Nudt18	BC036718	nudix (nucleoside diphosphate linked moiety X)-type motif 18	protein-coding	-0.0991389064596404	-0.0495775020296939	-0.0649321714809842	-0.0773367258822429	0.781601384413444	-0.0462210036820658	1.72622326078545	-0.0751324064342112	5.087970498228	0.134086944145685	0.571666672850202
Merged-chr14-108344744-2	chr14	108344644	108344844	+	551.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	569495.0	NM_199065	76965.0	Mm.257268	NM_199065	ENSMUSG00000075478	Slitrk1	3200001I04Rik	SLIT and NTRK-like family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-129559438-4	chr6	129559301	129559501	+	984.033325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18885.0	NM_153590	243655.0	Mm.30968	NM_153590	ENSMUSG00000050241	Klre1	Klre-1|NKG2I	killer cell lectin-like receptor family E member 1	protein-coding	1.76947945813533	1.96779165434183	1.77495713594295	1.5917891322739	2.14255569867371	1.68341255600312	2.03570203123484	1.8644273455217	0.517207194339622	0.593834313368885	0.9706660979479
Merged-chr1-97767853-2	chr1	97767753	97767953	+	780.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_173760, intron 1 of 27)	intron (NM_173760, intron 1 of 27)	2239.0	NM_173760	227399.0	Mm.220817	NM_173760	ENSMUSG00000040648	Ppip5k2	AW555814|Cfap160|D330021B20|Hisppd1|Vip2|mKIAA0433	diphosphoinositol pentakisphosphate kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-38228309-1	chr3	38228209	38228409	+	547.0	f1_balb.idr	Intergenic	B3|SINE|B2	-20190.0	NR_040541	71342.0	Mm.410782	NR_040541	ENSMUSG00000106002	5430434I15Rik	-	RIKEN cDNA 5430434I15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80770474-1	chr7	80770374	80770574	+	978.0	f1_c57bl6.idr	intron (NM_016721, intron 2 of 37)	B1_Mur2|SINE|Alu	32857.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-85840544-4	chr1	85840460	85840660	+	756.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355046, intron 5 of 9)	intron (NM_001355046, intron 5 of 9)	46543.0	NM_001355047	12283.0	Mm.26135	NM_133781	ENSMUSG00000036707	Cab39	AA408805|AA960512|C78372|MO25|MO25alpha	calcium binding protein 39	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-54417782-4	chr14	54417680	54417880	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253679)	promoter-TSS (NM_001253679)	-78.0	NM_011405	20540.0	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-138154128-2	chr4	138154052	138154252	+	814.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355700, intron 10 of 30)	B2_Mm2|SINE|B2	-9057.0	NR_105825	102466907.0		NR_105825	ENSMUSG00000098513	Mir6399	Gm27667|mir-6399|mmu-mir-6399	microRNA 6399	ncRNA	1.85694547772056	1.23300076823148	1.51337258504628	1.33624198972845	1.79719597197877	1.57624781333876	1.20904775280074	1.34215596867161	-0.03298477130658	0.977036755496118	0.998431161219273
Merged-chr12-12300348-4	chr12	12300240	12300440	+	997.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029758, intron 2 of 12)	intron (NM_029758, intron 2 of 12)	38201.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117543131-3	chr8	117543033	117543233	+	703.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172285, intron 2 of 32)	intron (NM_172285, intron 2 of 32)	44858.0	NM_172285	234779.0	Mm.192699	NM_172285	ENSMUSG00000034330	Plcg2	PLC-gamma-2|PLCgamma2|Plcg-2	phospholipase C, gamma 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-81833262-3	chr12	81833153	81833353	+	767.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-26777.0	NM_018814	54604.0	Mm.86584	NM_018814	ENSMUSG00000021140	Pcnx	2900024E21Rik|3526401J03Rik|AF096286|AI327143|AI413187|Pcnx1|Pcnxl1	pecanex homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-89015321-2	chr11	89015140	89015340	+	720.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009546, intron 6 of 8)	intron (NM_009546, intron 6 of 8)	15837.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	1.14204833164761	1.14618602835466	1.47037810456834	0.927575412875642	1.25715668766909	1.43088218560193	0.761523649472457	0.931274466882575	-0.267924218903579	0.842283479078966	0.998431161219273
Merged-chr10-115170729-3	chr10	115170626	115170826	+	818.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173391, intron 5 of 10)	intron (NM_173391, intron 5 of 10)	14296.0	NM_173391	216343.0	Mm.31597	NM_173391	ENSMUSG00000006764	Tph2	AU043594|Ntph	tryptophan hydroxylase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-89986183-3	chr16	89986081	89986281	+	748.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11482.0	NM_001145886	21844.0	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-123538318-2	chr9	123538218	123538418	+	587.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357485, intron 1 of 19)	intron (NM_001357485, intron 1 of 19)	8565.0	NM_030692	83493.0	Mm.273671	NM_030692	ENSMUSG00000025240	Sacm1l	SAC1|Sac1p|mKIAA0851	SAC1 suppressor of actin mutations 1-like (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-15637483-4	chr16	15637391	15637591	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011159)	promoter-TSS (NM_011159)	-91.0	NM_008565	17217.0	Mm.1500	NM_008565	ENSMUSG00000022673	Mcm4	19G|AI325074|AU045576|Cdc21|Mcmd4|mKIAA4003|mcdc21	minichromosome maintenance complex component 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-114973810-2	chr4	114973710	114973910	+	815.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025647, intron 1 of 5)	RSINE1|SINE|B4	13418.0	NM_025647	66588.0	Mm.294159	NM_025647	ENSMUSG00000028719	Cmpk1	0610011D08Rik|CK|Cmpk|UMP-CMPk	cytidine monophosphate (UMP-CMP) kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-139281307-3	chr7	139281252	139281452	+	791.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32870.0	NM_001098636	101631.0	Mm.334300	NM_001033206	ENSMUSG00000060260	Pwwp2b	AI594893|D7Ertd517e|D930023J19Rik|Pwwp2	PWWP domain containing 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-64178914-3	chr14	64178854	64179054	+	636.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253715, intron 4 of 4)	ID_B1|SINE|B4	74631.0	NM_028525	73382.0	Mm.481055	NM_028525	ENSMUSG00000021966	Prss52	1700049K14Rik|Tesp3	protease, serine 52	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-113082295-2	chr6	113082195	113082395	+	764.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028385, intron 1 of 21)	intron (NM_028385, intron 1 of 21)	4656.0	NM_028385	72895.0	Mm.367159	NM_028385	ENSMUSG00000034269	Setd5	2900045N06Rik|C330007C20|C85544|mKIAA1757	SET domain containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-73041042-2	chr15	73040942	73041142	+	626.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164643, intron 4 of 8)	intron (NM_001164643, intron 4 of 8)	14770.0	NM_029640	76510.0	Mm.158902	NM_029640	ENSMUSG00000047921	Trappc9	1810044A24Rik|2900005P22Rik|4632408O18Rik|Ibp|Nibp|TRS130|mKIAA1882	trafficking protein particle complex 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80539216-4	chr10	80539102	80539302	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026094)	promoter-TSS (NM_026094)	-78.0	NM_026094	67331.0	Mm.52511	NM_026094	ENSMUSG00000003341	Atp8b3	1700042F02Rik|1700056N23Rik|ATPIK|SAPLT	ATPase, class I, type 8B, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105349092-7	chr8	105348941	105349141	+	912.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001081332, exon 1 of 16)	5' UTR (NM_001081332, exon 1 of 16)	783.0	NM_001081332	277973.0	Mm.334766	NM_001081332	ENSMUSG00000014786	Slc9a5	Gm696	solute carrier family 9 (sodium/hydrogen exchanger), member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128966728-1	chr2	128966628	128966828	+	551.0	f0_balb.idr	promoter-TSS (NM_178404)	promoter-TSS (NM_178404)	-674.0	NM_178404	78751.0	Mm.26377	NM_178404	ENSMUSG00000042851	Zc3h6	4631426G04Rik|4833425H18Rik|AU024389|AW060453|Zc3hdc6|mKIAA2035	zinc finger CCCH type containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-65136386-4	chr5	65136284	65136484	+	992.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359401, intron 1 of 5)	intron (NM_001359401, intron 1 of 5)	5153.0	NM_175174	71778.0	Mm.10281	NM_175174	ENSMUSG00000054920	Klhl5	1300013C10Rik	kelch-like 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-76237496-4	chr18	76237407	76237607	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-4194.0	NM_010754	17126.0	Mm.152699	NM_010754	ENSMUSG00000024563	Smad2	7120426M23Rik|Madh2|Madr2|Smad-2|mMad2	SMAD family member 2	protein-coding	5.47802833532694	6.13591015872655	5.6429770106147	5.17336729803933	5.15213272080484	5.70717245807048	5.01523938382353	4.60580615627665	-0.546130813283055	0.0926911579822092	0.470833409598029
Merged-chr18-64991486-6	chr18	64991363	64991563	+	867.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114386, intron 1 of 30)	intron (NM_001114386, intron 1 of 30)	-32064.0	NM_031881	83814.0	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	-0.752703249331578	-1.19327662759868	-1.20367200772054	-1.21221108246634	-1.07350664517746	-1.1910239053609	-1.2013187215212	-1.21068259216948	-1.39419391438984	0.678133685438574	1
Merged-chr18-65680268-4	chr18	65680137	65680337	+	992.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361052, intron 6 of 8)	intron (NM_001361052, intron 6 of 8)	-18031.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107312976-4	chr9	107312871	107313071	+	969.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16312.0	NM_001317354	12700.0	Mm.4592	NM_009895	ENSMUSG00000032578	Cish	CIS-1|CIS1|Cis|F17|F23|SOCS	cytokine inducible SH2-containing protein	protein-coding	2.70836489609358	3.16396906094098	1.52640536377124	3.76936436978722	3.00233486866561	3.18793233905399	1.83132559534361	3.78761326540871	0.164250173477359	0.840999628859885	0.998431161219273
Merged-chr13-44978010-2	chr13	44977910	44978110	+	808.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025772, intron 5 of 9)	intron (NM_025772, intron 5 of 9)	24086.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-109838817-4	chr7	109838705	109838905	+	990.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020052, intron 7 of 21)	intron (NM_020052, intron 7 of 21)	26874.0	NM_020052	56788.0	Mm.40447	NM_020052	ENSMUSG00000007279	Scube2	4932442O19Rik|Cegf1|Cegp1	signal peptide, CUB domain, EGF-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70452250-4	chr11	70452156	70452356	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_025397, exon 2 of 3)	exon (NM_025397, exon 2 of 3)	325.0	NM_025397	66172.0	Mm.46424	NM_025397	ENSMUSG00000018923	Med11	1110030J09Rik|AI465144|AW545069	mediator complex subunit 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-158498428-4	chr2	158498329	158498529	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001291138, exon 30 of 30)	3' UTR (NM_001291138, exon 30 of 30)	-4183.0	NM_145635	246747.0	Mm.28800	NM_145635	ENSMUSG00000044405	Adig	SMAF-1|Smaf1	adipogenin	protein-coding	-0.814646203414956	-0.948132458442233	-0.260580320090758	-0.961569116139344	-0.964955961651228	-0.945393490738569	-0.957910421812185	-0.96115068189259	-3.02226751932349	0.31744843379996	1
Merged-chr4-132476044-2	chr4	132475944	132476144	+	895.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-12123.0	NM_026039	67219.0	Mm.45929	NM_026039	ENSMUSG00000066042	Med18	2810046C01Rik	mediator complex subunit 18	protein-coding	2.81023634319528	2.40863157676633	2.46392385177534	2.61586969743346	2.83240414658314	2.42537322175663	2.48223732160281	2.5247148726201	-0.01669528686713	0.981902741275347	0.998431161219273
Merged-chr11-103117973-2	chr11	103117873	103118073	+	782.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_138753, exon 1 of 1)	exon (NM_138753, exon 1 of 1)	1648.0	NM_138753	192231.0	Mm.8763	NM_138753	ENSMUSG00000048878	Hexim1	7330426E13Rik|CLP-1|Clp1|HIS1	hexamethylene bis-acetamide inducible 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-62459415-2	chr3	62459315	62459515	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081295, intron 12 of 13)	intron (NM_001081295, intron 12 of 13)	47573.0	NM_028136	72162.0	Mm.224233	NM_028136	ENSMUSG00000027770	Dhx36	2810407E23Rik|AI452301|AU022184|Ddx36|mKIAA1488	DEAH (Asp-Glu-Ala-His) box polypeptide 36	protein-coding	0.229881975511562	1.01856956247046	0.852969748640827	0.2398257437304	0.231367370706493	0.789101602815694	0.442392795417285	0.240866616319564	-1.12787223133912	0.559493346215284	1
Merged-chr3-98126002-2	chr3	98125902	98126102	+	592.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010928, intron 21 of 33)	intron (NM_010928, intron 21 of 33)	-34632.0	NM_027665	71078.0	Mm.50711	NM_027665	ENSMUSG00000043468	Adam30	4933424D07Rik|svph4	a disintegrin and metallopeptidase domain 30	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-61571015-6	chr18	61570930	61571130	+	982.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357500, intron 4 of 9)	intron (NM_001357500, intron 4 of 9)	15757.0	NM_146087	93687.0	Mm.26908	NM_146087	ENSMUSG00000024576	Csnk1a1	2610208K14Rik|4632404G05Rik|5430427P18Rik|CK1a|Csnk1a	casein kinase 1, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152540717-4	chr1	152540636	152540836	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 9 of 17)	intron (NM_016846, intron 9 of 17)	84481.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-115491445-4	chr6	115491346	115491546	+	806.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	-53258.0	NM_199033	381802.0	Mm.291208	NM_199033	ENSMUSG00000042389	Tsen2	AU067695	tRNA splicing endonuclease subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-39578098-2	chr1	39577998	39578198	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033135)	promoter-TSS (NM_001033135)	-751.0	NM_001033135	67702.0	Mm.28614	NM_001033135	ENSMUSG00000048234	Rnf149	1600023E10Rik|AV037261|C76763|Gm15832|Greul4	ring finger protein 149	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-147887531-2	chr4	147887431	147887631	+	556.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355590, intron 6 of 18)	intron (NM_001355590, intron 6 of 18)	17130.0	NM_001355590	170731.0	Mm.154312	NM_133201	ENSMUSG00000029020	Mfn2	D630023P19Rik|Fzo	mitofusin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-129846971-4	chr5	129846869	129847069	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026445)	promoter-TSS (NM_026445)	-21.0	NM_026445	67902.0	Mm.103546	NM_026445	ENSMUSG00000025538	Sumf2	2610040F05Rik	sulfatase modifying factor 2	protein-coding	6.02271727572993	5.47950803087345	5.54602226326997	5.95844416016169	4.79818104482986	3.97120843965344	4.69929510853906	3.78583911853627	-1.62296496008065	1.74520576251518e-06	0.000104347070126199
Merged-chr13-60660843-4	chr13	60660721	60660921	+	988.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	58610.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	4.01083028823161	3.49866720830544	3.72594767990714	3.06795488101997	4.32640369305295	3.71436945436173	3.82825856686998	3.9100100669519	0.498124089842156	0.315359435418781	0.817980640376335
Merged-chr11-22853557-1	chr11	22853457	22853657	+	681.0	f0_balb.idr	intron (NM_001169114, intron 1 of 1)	intron (NM_001169114, intron 1 of 1)	6178.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46508563-2	chr19	46508463	46508663	+	718.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_053100, intron 1 of 5)	intron (NM_053100, intron 1 of 5)	6915.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135951273-4	chr5	135951227	135951427	+	857.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16686.0	NM_018871	22628.0	Mm.233813	NM_018871	ENSMUSG00000051391	Ywhag	14-3-3gamma|D7Bwg1348e	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide	protein-coding	-0.444746007060869	0.298621612271005	-0.436196476861267	-0.439410027953724	-0.167091604181117	-0.230193937311641	-0.435277910711152	-0.438848590442668	-1.02549871531607	0.686606555557482	1
Merged-chr11-21091178-4	chr11	21091091	21091291	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023324)	promoter-TSS (NM_023324)	-133.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-27884556-4	chr15	27884431	27884631	+	961.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081302, intron 9 of 56)	intron (NM_001081302, intron 9 of 56)	141317.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-181290483-2	chr2	181290383	181290583	+	770.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-2517.0	NM_198169	229004.0	Mm.220423	NM_198169	ENSMUSG00000038705	Gmeb2	AI839884	glucocorticoid modulatory element binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-95823027-2	chr11	95822927	95823127	+	945.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1473.0	NM_153104	237928.0	Mm.133075	NM_153104	ENSMUSG00000050860	Phospho1	D11Moh36|Phospo1	phosphatase, orphan 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-131495976-2	chr3	131495876	131496076	+	554.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-68792.0	NM_001289479	23971.0	Mm.244912	NM_011863	ENSMUSG00000028032	Papss1	AI325286|Asapk|SK1	3'-phosphoadenosine 5'-phosphosulfate synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-153914074-4	chr1	153913986	153914186	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14157.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-79995795-4	chr18	79995643	79995843	+	949.591675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A3-int|LTR|ERVL-MaLR	-51152.0	NM_053117	93737.0	Mm.24678	NM_053117	ENSMUSG00000056214	Pard6g	2410049N21Rik|Par6a	par-6 family cell polarity regulator gamma	protein-coding	1.60456157173606	1.94385351000877	2.45318579094221	2.19697001200554	1.88798139546229	1.57914523348911	2.3795201340594	2.20815451362995	-0.0934756432178349	0.92077448654661	0.998431161219273
Merged-chr17-37276092-4	chr17	37275987	37276187	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	4331.0	NM_146515	258508.0	Mm.377544	NM_146515	ENSMUSG00000061972	Olfr99	MOR156-1	olfactory receptor 99	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-61680259-4	chr10	61680182	61680382	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358488)	promoter-TSS (NM_001358488)	-3.0	NM_001358488	20224.0	Mm.391794	NM_009120	ENSMUSG00000020088	Sar1a	1600019H17Rik|Sara|Sara1	secretion associated Ras related GTPase 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-81932658-4	chr3	81932556	81932756	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177662)	promoter-TSS (NM_177662)	55.0	NM_177662	229445.0	Mm.254642	NM_177662	ENSMUSG00000028015	Ctso	A330105D01Rik|AI118514	cathepsin O	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-109058698-1	chr4	109058598	109058798	+	620.0	f1_c57bl6.idr	intron (NM_146150, intron 26 of 30)	intron (NM_146150, intron 26 of 30)	41043.0	NR_030432	791075.0		NR_030432	ENSMUSG00000076444	Mir761	Mirn761|mir-761|mmu-mir-761	microRNA 761	ncRNA	1.13704104739276	0.42778195961997	1.46081132751043	0.409309466326647	0.572293052169277	0.430098262031654	1.08237213828951	0.410732408025942	-1.36611175234007	0.440855545836272	0.909871245231123
Merged-chr13-41932520-3	chr13	41932424	41932624	+	579.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	66609.0	NR_033545	100038577.0	Mm.387093	NR_033545	ENSMUSG00000113856	Gm10790	-	predicted gene 10790	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45094244-2	chr7	45094144	45094344	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357117, intron 5 of 6)	B3A|SINE|B2	-2031.0	NM_001355045	52377.0	Mm.29997	NM_026555	ENSMUSG00000019539	Rcn3	6030455P07Rik|D530026G20Rik|D7Ertd671e|RLP49	reticulocalbin 3, EF-hand calcium binding domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-10954604-2	chr16	10954504	10954704	+	597.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	38517.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24171944-4	chr17	24171837	24172037	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2259.0	NM_001361531	11984.0	Mm.30155	NM_009729	ENSMUSG00000024121	Atp6v0c	Atp6c|Atp6c2|Atp6l|Atpl|Atpl-rs1|PL16|VATL|Vma3	ATPase, H+ transporting, lysosomal V0 subunit C	protein-coding	6.74390729001544	6.77318846346189	6.82202048376486	6.7844740975407	6.69570447015971	6.49557492185325	6.3949444661922	6.89607285017852	-0.151310291914323	0.417478109209185	0.897409723507739
Merged-chr1-26688133-3	chr1	26688018	26688218	+	638.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033764)	promoter-TSS (NM_001033764)	-658.0	NM_001033764	210940.0	Mm.297614	NM_001033764	ENSMUSG00000073722	4931408C20Rik	-	RIKEN cDNA 4931408C20 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-22757584-4	chr8	22757496	22757696	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008872)	promoter-TSS (NM_008872)	-126.0	NM_008872	18791.0	Mm.154660	NM_008872	ENSMUSG00000031538	Plat	AU020998|AW212668|D8Ertd2e|tPA	plasminogen activator, tissue	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-128961859-2	chr4	128961759	128961959	+	546.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172875, intron 2 of 10)	intron (NM_172875, intron 2 of 10)	596.0	NM_172875	242669.0	Mm.215814	NM_172875	ENSMUSG00000028789	Azin2	4933429I20Rik|Adc|Azi2|B930082O19|ODC-p|Odcp	antizyme inhibitor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-40437375-3	chr10	40437276	40437476	+	962.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291817, intron 4 of 11)	L1_Mus2|LINE|L1	88068.0	NM_001291816	78334.0	Mm.200924	NM_198164	ENSMUSG00000038481	Cdk19	2700084L06Rik|AI845279|AW228747|CDK11|Cdc2l6|mKIAA1028	cyclin-dependent kinase 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-148140372-8	chr4	148140231	148140431	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027985)	promoter-TSS (NM_027985)	-159.0	NM_027985	71890.0	Mm.9648	NM_027985	ENSMUSG00000029003	Mad2l2	2310033C13Rik|G1-453-4|MAD2B|REV7|repro22	MAD2 mitotic arrest deficient-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-74392659-4	chr1	74392576	74392776	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153088, intron 1 of 6)	intron (NM_153088, intron 1 of 6)	1067.0	NM_153088	227292.0	Mm.165042	NM_153088	ENSMUSG00000026176	Ctdsp1	GIP|NLIIF|Nif3|SCP1	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-98677589-4	chr15	98677483	98677683	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172612)	promoter-TSS (NM_172612)	-122.0	NM_172612	223881.0	Mm.274010	NM_172612	ENSMUSG00000054855	Rnd1	A830014L09Rik|Arhs	Rho family GTPase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-44991144-4	chr16	44991038	44991238	+	973.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47460.0	NM_001128132	74603.0	Mm.297337	NM_027578	ENSMUSG00000036172	Cd200r3	4733401I18Rik|4833409J19Rik|AI505817|BB106877|mCD200RLb	CD200 receptor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-54540854-2	chr8	54540754	54540954	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1-int|LTR|ERVL-MaLR	-9477.0	NM_029569	76294.0	Mm.33171	NM_029569	ENSMUSG00000031519	Asb5	1110018D09Rik	ankyrin repeat and SOCs box-containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-79547517-2	chr15	79547417	79547617	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199080)	promoter-TSS (NM_199080)	-776.0	NM_199080	67040.0	Mm.29644	NM_152806	ENSMUSG00000055065	Ddx17	2610007K22Rik|A430025E01Rik|AI047725|C80929|Gm926|p72	DEAD (Asp-Glu-Ala-Asp) box polypeptide 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-105400192-4	chr7	105400083	105400283	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001242363)	promoter-TSS (NM_001242363)	-129.0	NM_001242363	74349.0	Mm.30254	NM_199009	ENSMUSG00000044465	Fam160a2	4632419K20Rik|6530415H11Rik|FHIP	family with sequence similarity 160, member A2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171409363-3	chr1	171409273	171409473	+	953.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001005508, exon 12 of 12)	3' UTR (NM_001005508, exon 12 of 12)	-1940.0	NM_001305678	22278.0	Mm.8	NM_009480	ENSMUSG00000026641	Usf1	bHLHb11	upstream transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-29579325-4	chr16	29579227	29579427	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199177)	promoter-TSS (NM_001199177)	-7.0	NM_133752	74143.0	Mm.274285	NM_133752	ENSMUSG00000038084	Opa1	1200011N24Rik|AI225888|AI847218|lilr3|mKIAA0567	OPA1, mitochondrial dynamin like GTPase	protein-coding	5.84211114733504	6.30597388963372	6.26424340660805	5.66119676323661	5.96608056485709	6.63147145950017	6.30229765104983	6.06224428890379	0.239370144929993	0.330144800708693	0.83197671091297
Merged-chr18-18106912-2	chr18	18106812	18107012	+	676.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MERVL_2A-int|LTR|ERVL	-525922.0	NR_045374	75162.0	Mm.60874	NR_045374		4930545E07Rik	-	RIKEN cDNA 4930545E07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-127228634-2	chr6	127228534	127228734	+	587.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-77586.0	NM_009829	12444.0	Mm.333406	NM_009829	ENSMUSG00000000184	Ccnd2	2600016F06Rik|AI256817|BF642806|C86853|Vin-1|Vin1|cD2	cyclin D2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30413829-4	chr7	30413739	30413939	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011662)	promoter-TSS (NM_011662)	51.0	NM_011662	22177.0	Mm.46301	NM_011662	ENSMUSG00000030579	Tyrobp	DAP12|KARAP|Ly83	TYRO protein tyrosine kinase binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-97071993-2	chr13	97071893	97072093	+	750.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001100458, intron 1 of 12)	CpG	350.0	NM_001100458	320557.0	Mm.458280	NM_001100458	ENSMUSG00000041817	Fam169a	B230112C05Rik|SLAP75	family with sequence similarity 169, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-54358573-4	chr3	54358460	54358660	+	908.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2547.0	NM_001198766	50706.0	Mm.236067	NM_015784	ENSMUSG00000027750	Postn	A630052E07Rik|AI747096|OSF-2|Osf2|PLF|PN	periostin, osteoblast specific factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120012697-2	chr11	120012597	120012797	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001198787, intron 10 of 13)	intron (NM_001198787, intron 10 of 13)	-2070.0	NR_037225	100526518.0		NR_037225	ENSMUSG00000105524	Mir3065	mir-3065|mmu-mir-3065	microRNA 3065	ncRNA	-0.394205499204984	-0.612424553285916	-0.614911916550579	-0.357553574377468	-0.496244993715704	-0.611859760450626	-0.61436586774003	-0.353737369919993	-0.339052884366727	0.894656626695492	1
Merged-chr3-68976230-4	chr3	68976148	68976348	+	954.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026641, intron 5 of 19)	intron (NM_026641, intron 5 of 19)	28322.0	NM_026641	68259.0	Mm.389451	NM_026641	ENSMUSG00000027778	Ift80	4921524P20Rik|Wdr56|mKIAA1374	intraflagellar transport 80	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-136152357-2	chr4	136152257	136152457	+	866.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8535.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-117131666-2	chr4	117131564	117131764	+	913.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_013807, exon 7 of 15)	exon (NM_013807, exon 7 of 15)	2299.0	NM_013807	12795.0	Mm.259022	NM_013807	ENSMUSG00000028680	Plk3	Cnk|Fnk|PLK-3|PRK	polo like kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-86893757-3	chr8	86893627	86893827	+	837.688904	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8469.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	0.81175590679108	0.399644962748599	0.365889445968527	0.0341961039516834	0.02802935926986	0.243217037626572	0.0398014595382114	0.0349579599478313	-3.14778869656842	0.131820840752715	1
Merged-chr6-143167873-3	chr6	143167765	143167965	+	854.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029250, intron 1 of 7)	CpG	635.0	NM_029250	75320.0	Mm.272548	NM_029250	ENSMUSG00000030275	Etnk1	1110061E11Rik|4930555L11Rik|AI195356|AI841245|C80956|D6Ertd3e|EKI1	ethanolamine kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-90492778-4	chr11	90492664	90492864	+	930.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011505, intron 17 of 17)	intron (NM_011505, intron 17 of 17)	-101847.0	NM_172563	217082.0	Mm.158903	NM_172563	ENSMUSG00000003949	Hlf	E230015K02Rik	hepatic leukemia factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-92485067-4	chr5	92484970	92485170	+	902.2333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007644, intron 2 of 11)	intron (NM_007644, intron 2 of 11)	20587.0	NM_007644	12492.0	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-42862460-4	chr10	42862348	42862548	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359265, intron 1 of 6)	intron (NM_001359265, intron 1 of 6)	1936.0	NM_001359264	268297.0	Mm.98731	NM_172938	ENSMUSG00000044770	Scml4	9330161D17|mFLJ00197	Scm polycomb group protein like 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-129925053-4	chr5	129924980	129925180	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16540.0	NM_026916	69034.0	Mm.211372	NM_026916	ENSMUSG00000095789	Nupr1l	1810010E01Rik|4930579G22Rik|Nupr2	nuclear protein transcriptional regulator 1 like	protein-coding	5.07888207496806	4.83757346230824	5.26221457645165	5.2892837163379	6.09461102135945	6.22260009536609	5.60201426611269	6.19115286718066	1.03548845426175	0.00012312216391389	0.0036029749332655
Merged-chr16-97998280-2	chr16	97998180	97998380	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001362093, intron 1 of 3)	intron (NM_001362093, intron 1 of 3)	933.0	NR_130962	245305.0	Mm.148033	NM_001362093		B230307C23Rik	8030444G23Rik|EG245305	RIKEN cDNA B230307C23 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-120909863-2	chr14	120909763	120909963	+	850.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-1331.0	NM_023579	70572.0	Mm.221452	NM_023579	ENSMUSG00000030662	Ipo5	1110011C18Rik|5730478E03Rik|AA409333|C76941|IMB3|Kpnb3|Ranbp5|imp5	importin 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3394094-2	chr12	3393994	3394194	+	596.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_008445, intron 5 of 7)	PB1|SINE|Alu	28962.0	NM_008445	16570.0	Mm.7688	NM_008445	ENSMUSG00000020668	Kif3c	mKIAA4058	kinesin family member 3C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-10555033-2	chr10	10554933	10555133	+	807.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026405, intron 1 of 2)	intron (NM_026405, intron 1 of 2)	3174.0	NM_026405	67844.0	Mm.31486	NM_026405	ENSMUSG00000019832	Rab32	2810011A17Rik|AU022057	RAB32, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127376096-4	chr7	127376002	127376202	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175560)	promoter-TSS (NM_175560)	-52.0	NM_175560	269997.0	Mm.221270	NM_175560	ENSMUSG00000054381	Zfp747	6430604K15Rik	zinc finger protein 747	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-64946626-4	chr8	64946513	64946713	+	957.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028427)	promoter-TSS (NM_028427)	-572.0	NM_001163747	73067.0	Mm.294445	NM_028427	ENSMUSG00000025521	Tmem192	3110005G23Rik	transmembrane protein 192	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-32274967-4	chr4	32274864	32275064	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-142471.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97428654-1	chr11	97428554	97428754	+	540.0	f1_c57bl6.idr	Intergenic	Intergenic	-21506.0	NM_021493	58996.0	Mm.394118	NM_021493	ENSMUSG00000049807	Arhgap23	A330041B18Rik	Rho GTPase activating protein 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-125274405-2	chr5	125274313	125274513	+	879.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	66681.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-181060280-2	chr2	181060180	181060380	+	699.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21103.0	NM_015730	11438.0	Mm.252369	NM_015730	ENSMUSG00000027577	Chrna4	Acra-4|Acra4|EBN1|ENFL1	cholinergic receptor, nicotinic, alpha polypeptide 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-86396828-2	chr1	86396728	86396928	+	545.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7467.0	NM_001319227	14767.0	Mm.389159	NM_010341	ENSMUSG00000026237	Nmur1	FM-3|Gpr66|NMU-R1|NMU1R|NmU-R	neuromedin U receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-94591541-4	chr15	94591455	94591655	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1731.0	NM_008971	19230.0	Mm.490250	NM_008971	ENSMUSG00000022451	Twf1	A6|Ptk9|twinfilin	twinfilin actin binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97445309-4	chr6	97445166	97445366	+	996.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	14020.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-20230562-2	chr12	20230462	20230662	+	778.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MMERGLN-int|LTR|ERV1	585217.0	NR_015521	69513.0	Mm.273972	NR_015521	ENSMUSG00000099759	1700030C10Rik	-	RIKEN cDNA 1700030C10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-106327606-2	chr9	106327509	106327709	+	618.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027354, intron 9 of 10)	intron (NM_027354, intron 9 of 10)	-41023.0	NM_153459	235584.0	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	-1.50525340993932	-1.47388616340953	-1.48337187766321	-1.34191013583787	-1.3545969562444	-1.47183056956015	-1.48122451987711	-1.34051539875028	0.708891105143862	0.826881111389938	1
Merged-chr16-77644008-3	chr16	77643913	77644113	+	786.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2260.0	NR_029540	723952.0		NR_029540	ENSMUSG00000065472	Mir125b-2	Mirn125b-2|mir-125b-2	microRNA 125b-2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-45406567-1	chr4	45406467	45406667	+	552.0	f1_balb.idr	intron (NM_001009949, intron 1 of 2)	intron (NM_001009949, intron 1 of 2)	2199.0	NM_001009949	230125.0	Mm.260210	NM_001009949	ENSMUSG00000045973	Slc25a51	9130208E07Rik|D130005A03Rik|Gm138|Mcart1	solute carrier family 25, member 51	protein-coding	-0.425266383356027	-0.41102128147548	0.384145680254334	-0.419270780934918	-0.424372788366966	-0.409975081112927	0.075095642831553	-0.418641389440513	-0.966493086884484	0.717920514589089	1
Merged-chr2-120150960-2	chr2	120150860	120151060	+	659.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133838, intron 1 of 5)	intron (NM_133838, intron 1 of 5)	3615.0	NM_133838	98878.0	Mm.132226	NM_133838	ENSMUSG00000027293	Ehd4	2210022F10Rik|AI197390|AI846352|AV006278|Past2	EH-domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-77462527-4	chr11	77462410	77462610	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1403.0	NM_139129	216961.0	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-9573804-4	chr3	9573718	9573918	+	995.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133218, intron 1 of 8)	intron (NM_133218, intron 1 of 8)	36267.0	NM_133218	170753.0	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-19604692-4	chr4	19604584	19604784	+	972.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025476, intron 8 of 9)	intron (NM_025476, intron 8 of 9)	29618.0	NM_025476	66302.0	Mm.440686	NM_025476	ENSMUSG00000028229	Rmdn1	Fam82b|RMD-1	regulator of microtubule dynamics 1	protein-coding	2.72414281226532	2.38605651693451	1.52955604119975	1.49285267533001	2.32624823987304	2.14338095430914	1.53981865304492	2.5333739610213	0.06641858625182	0.945597171070955	0.998431161219273
Merged-chr2-152695952-2	chr2	152695811	152696011	+	747.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_010376, intron 10 of 11)	intron (NM_010376, intron 10 of 11)	8763.0	NM_025543	66405.0	Mm.440291	NM_025543	ENSMUSG00000042814	Mcts2	2400002F11Rik|MCT-2	malignant T cell amplified sequence 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-57589496-4	chr9	57589395	57589595	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027895)	promoter-TSS (NM_027895)	43.0	NM_027895	71742.0	Mm.155877	NM_027895	ENSMUSG00000032308	Ulk3	1200015E14Rik	unc-51-like kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-175626209-4	chr1	175626267	175626467	+	900.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010209)	promoter-TSS (NM_010209)	-732.0	NM_010209	14194.0	Mm.41502	NM_010209	ENSMUSG00000026526	Fh1	Fh|Fh-1	fumarate hydratase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-96145786-2	chr11	96145686	96145886	+	841.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172799, intron 8 of 14)	intron (NM_172799, intron 8 of 14)	12000.0	NM_172799	237930.0	Mm.249912	NM_172799	ENSMUSG00000038756	Ttll6	4932418K24Rik|D11Moh43e|D11Moh44e|t8130b59	tubulin tyrosine ligase-like family, member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-50975137-1	chr17	50975037	50975237	+	583.0	f0_balb.idr	intron (NM_028162, intron 4 of 21)	L1_Mus4|LINE|L1	184241.0	NM_001285993	72238.0	Mm.120650	NM_028162	ENSMUSG00000023923	Tbc1d5	1600014N05Rik	TBC1 domain family, member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-105393573-4	chr5	105393467	105393667	+	897.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13D3|LTR|ERVK	-22208.0	NM_001033550	433926.0	Mm.439781	NM_001033550	ENSMUSG00000070639	Lrrc8b	2210408K08Rik|R75581|Ta-lrrp|mKIAA0231	leucine rich repeat containing 8 family, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-52099390-4	chr11	52099274	52099474	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019411, intron 1 of 6)	CpG	550.0	NM_019411	19052.0	Mm.260288	NM_019411	ENSMUSG00000020349	Ppp2ca	PP2A|R75353	protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-111118354-8	chr9	111118278	111118478	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001164838, exon 1 of 15)	5' UTR (NM_001164838, exon 1 of 15)	267.0	NM_001164838	71268.0	Mm.302287	NM_027742	ENSMUSG00000032497	Lrrfip2	5133400F20Rik|AI850587	leucine rich repeat (in FLII) interacting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124747018-2	chr6	124746918	124747118	+	824.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_007881, exon 5 of 10)	exon (NM_007881, exon 5 of 10)	-5939.0	NM_013535	14790.0	Mm.439877	NM_013535	ENSMUSG00000072772	Grcc10	2310033H05Rik|C10	gene rich cluster, C10 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-97650265-3	chr1	97650168	97650368	+	669.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355071, intron 1 of 1)	intron (NM_001355071, intron 1 of 1)	11408.0	NM_001355074	52392.0	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-37841959-2	chr18	37841859	37842059	+	555.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001174154)	TTS (NM_001174154)	12701.0	NR_105945	102465592.0		NR_105945	ENSMUSG00000098706	Mir6979	Gm27524|mmu-mir-6979	microRNA 6979	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-100016427-2	chr13	100016327	100016527	+	976.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030026)	promoter-TSS (NM_030026)	-788.0	NM_030026	78038.0	Mm.137327	NM_030026	ENSMUSG00000021646	Mccc2	4930552N12Rik|MCCB	methylcrotonoyl-Coenzyme A carboxylase 2 (beta)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-100637910-3	chr15	100637910	100638110	+	926.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1070.0	NM_001033872	207818.0	Mm.26282	NM_174992	ENSMUSG00000053559	Smagp	-	small cell adhesion glycoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41071750-4	chr19	41071645	41071845	+	756.216675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153520, intron 2 of 5)	intron (NM_153520, intron 2 of 5)	5368.0	NM_153520	226115.0	Mm.54119	NM_153520	ENSMUSG00000050121	Opalin	Tmem10|Tmp10	oligodendrocytic myelin paranodal and inner loop protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-32165166-2	chr18	32165066	32165266	+	553.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_011946, intron 1 of 16)	intron (NM_011946, intron 1 of 16)	2077.0	NM_011946	26405.0	Mm.211762	NM_011946	ENSMUSG00000024383	Map3k2	9630061B06Rik|AI585793|Mekk2|Mekk2b	mitogen-activated protein kinase kinase kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-43672468-3	chr7	43672389	43672589	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145582, intron 1 of 2)	intron (NM_145582, intron 1 of 2)	458.0	NM_145582	233189.0	Mm.26514	NM_145582	ENSMUSG00000038888	Ctu1	Atpbd3|BC005752	cytosolic thiouridylase subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-123242483-4	chr7	123242392	123242592	+	824.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146198, intron 6 of 16)	intron (NM_146198, intron 6 of 16)	27626.0	NM_146198	233836.0	Mm.211838	NM_146198	ENSMUSG00000030769	Slc5a11	2010013B02Rik|Kst1|RKST2|SMIT2|Slc5a10	solute carrier family 5 (sodium/glucose cotransporter), member 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-41738503-4	chr4	41738401	41738601	+	759.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001286551)	TTS (NM_001286551)	2858.0	NM_001286540	18391.0	Mm.425181	NM_011014	ENSMUSG00000036078	Sigmar1	Oprs1|Sig1R|sigma1R	sigma non-opioid intracellular receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-119189501-4	chr2	119189382	119189582	+	673.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139139, intron 1 of 10)	intron (NM_139139, intron 1 of 10)	14973.0	NM_001039223	623781.0	Mm.389344	NM_001039223	ENSMUSG00000055926	Gm14137	-	predicted gene 14137	protein-coding	0.801137621764632	0.410982027451141	0.401863452085095	1.34465975803144	0.384627441293839	0.41302496483787	0.770582122438053	1.09410560366228	-0.518576201490814	0.773173471590431	1
Merged-chr11-103268574-2	chr11	103268474	103268674	+	671.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1173.0	NM_016896	53859.0	Mm.158981	NM_016896	ENSMUSG00000020941	Map3k14	Nik|aly	mitogen-activated protein kinase kinase kinase 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-75093615-4	chr8	75093514	75093714	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010442)	promoter-TSS (NM_010442)	-4.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-121235099-2	chr11	121234999	121235199	+	694.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2137.0	NM_026272	67608.0	Mm.291832	NM_026272	ENSMUSG00000000056	Narf	4430402O11Rik	nuclear prelamin A recognition factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-80197987-2	chr18	80197887	80198087	+	625.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_199197, intron 1 of 5)	B3|SINE|B2	2632.0	NM_199197	68731.0	Mm.186936	NM_199197	ENSMUSG00000024570	Rbfa	1110032A13Rik|AI595940	ribosome binding factor A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191115810-6	chr1	191115681	191115881	+	993.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR33|LTR|ERVL	17367.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	4.31377345705928	4.38786078090748	4.18889015329624	3.15592074230162	4.54004126265812	3.92508162375643	5.0756886628159	4.15411495243541	0.533910997675164	0.248781759834118	0.74758343357745
Merged-chr7-97337711-2	chr7	97337610	97337810	+	545.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039039, intron 1 of 1)	intron (NM_001039039, intron 1 of 1)	5387.0	NM_001039039	622320.0	Mm.334029	NM_001039039	ENSMUSG00000044952	Kctd21	EG622320	potassium channel tetramerisation domain containing 21	protein-coding	-1.50874880059862	-1.47511716453926	-1.4852876488768	-1.49364198752927	-1.50638792193216	-0.992828729615453	-1.48298527415345	-1.4921465649048	2.3185461113984	0.50391666537493	1
Merged-chr12-3799756-4	chr12	3799641	3799841	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7239.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-20028816-4	chr3	20028743	20028943	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080634, intron 4 of 16)	intron (NM_080634, intron 4 of 16)	6467.0	NM_001146324	12807.0	Mm.291533	NM_080634	ENSMUSG00000027615	Hps3	coa	HPS3, biogenesis of lysosomal organelles complex 2 subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-20180745-7	chr13	20180506	20180706	+	975.035706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 1 of 21)	ORR1F|LTR|ERVL-MaLR	90099.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	0.855532150275132	0.581971102598561	0.772716056680126	1.67708127494986	1.19721670101983	0.584405314734038	0.948809509840896	0.754926533876161	-0.730486207930853	0.629037079871202	0.981055511574238
Merged-chr2-27416690-2	chr2	27416590	27416790	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009500, intron 1 of 27)	intron (NM_009500, intron 1 of 27)	10918.0	NR_133905	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71666568-3	chr8	71666508	71666708	+	674.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001029873, intron 2 of 41)	intron (NM_001029873, intron 2 of 41)	5149.0	NM_001029873	382018.0	Mm.334606	NM_001029873	ENSMUSG00000034799	Unc13a	2410078G03Rik|Munc13-1	unc-13 homolog A (C. elegans)	protein-coding	0.694091882305263	0.153422147611941	0.147429607560256	0.306785148305329	0.518190112463782	0.154772451711456	0.827562931810322	0.143611666752951	0.640219281696456	0.750714760801425	1
Merged-chr3-106547784-4	chr3	106547692	106547892	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133869)	promoter-TSS (NM_133869)	-6.0	NM_001286986	67171.0	Mm.290488	NM_026013	ENSMUSG00000027900	Dram2	2010305N14Rik|2610318G18Rik|AI647667|Tmem77	DNA-damage regulated autophagy modulator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117202628-2	chr11	117202528	117202728	+	782.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113486, intron 1 of 11)	intron (NM_001113486, intron 1 of 11)	2967.0	NM_001113486	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96577468-4	chr3	96577368	96577568	+	924.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001293701)	TTS (NM_001293701)	-10667.0	NR_040409	100038464.0	Mm.475126	NR_040409	ENSMUSG00000074398	Gm15441	-	predicted gene 15441	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129024963-4	chr4	129024875	129025075	+	873.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31751.0	NM_001033966	11637.0	Mm.29460	NM_016895	ENSMUSG00000028792	Ak2	Ak-2|D4Ertd220e	adenylate kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-24774595-1	chr9	24774495	24774695	+	577.0	f0_balb.idr	promoter-TSS (NM_020496)	promoter-TSS (NM_020496)	-292.0	NM_001205085	57246.0	Mm.31452	NM_020496	ENSMUSG00000031965	Tbx20	9430010M06Rik|AL022859|Tbx12	T-box 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-7260617-3	chr10	7260492	7260692	+	899.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48355.0	NM_172546	215748.0	Mm.37984	NM_172546	ENSMUSG00000015202	Cnksr3	6820402C05|BC024086|Magi1	Cnksr family member 3	protein-coding	3.59056987358785	3.4455186249231	2.98482020977731	2.89422094204313	4.31103727831547	4.27593318520454	3.77632789638115	3.51326295093043	1.10570613110614	0.0355349172406256	0.266973386978286
Merged-chr15-46584762-2	chr15	46584662	46584862	+	661.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13B|LTR|ERVK	-38543.0	NR_045811	75281.0	Mm.159487	NR_045811	ENSMUSG00000051198	4930548G14Rik	-	RIKEN cDNA 4930548G14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-61896563-2	chr9	61896463	61896663	+	636.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17947.0	NM_018853	56040.0	Mm.3158	NM_018853	ENSMUSG00000007892	Rplp1	2410042H16Rik|Arpp1|C430017H15Rik	ribosomal protein, large, P1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-126204298-2	chr4	126204161	126204361	+	695.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER21A|LTR|ERV1	-1551.0	NM_146153	230753.0	Mm.29813	NM_146153	ENSMUSG00000043962	Thrap3	9330151F09Rik|B230333E16Rik|Trap150	thyroid hormone receptor associated protein 3	protein-coding	-0.088417994958718	0.56044202383626	-0.076903743532217	-0.0812242392818727	-0.0873461229137009	0.571795233666217	-0.0756703383249192	0.238688001538707	0.543442975585628	0.812001668703579	1
Merged-chr2-58759799-2	chr2	58759699	58759899	+	751.916687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289660, intron 2 of 7)	MER5A1|DNA|hAT-Charlie	4615.0	NM_029692	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-97907458-3	chr15	97907384	97907584	+	782.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009504, intron 1 of 9)	intron (NM_009504, intron 1 of 9)	812.0	NM_009504	22337.0	Mm.245084	NM_009504	ENSMUSG00000022479	Vdr	Nr1i1	vitamin D (1,25-dihydroxyvitamin D3) receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84871526-4	chr8	84871403	84871603	+	726.395813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027954)	promoter-TSS (NM_027954)	-608.0	NR_031759	71846.0	Mm.229128	NM_027954	ENSMUSG00000003824	Syce2	1700013H19Rik|AA407907|Cesc1	synaptonemal complex central element protein 2	protein-coding	0.969668915247441	1.51128086250908	1.0583800508101	0.667526487462212	1.32179747071475	0.692972619824672	0.680278016373988	1.67668877702509	0.338387591613866	0.822491512059321	0.998431161219273
Merged-chr12-72759434-2	chr12	72759334	72759534	+	927.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1777.0	NM_008910	19042.0	Mm.261045	NM_008910	ENSMUSG00000021096	Ppm1a	2310003C21Rik|2900017D14Rik|AI427932|AU017636|MMPa-2|MPPa-1	protein phosphatase 1A, magnesium dependent, alpha isoform	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-82825706-4	chr18	82825607	82825807	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30190.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-80883885-2	chr13	80883785	80883985	+	891.6666869999999	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_153410, exon 1 of 8)	non-coding (NR_153410, exon 1 of 8)	463.0	NM_001042591	105171.0	Mm.423137	NM_001042591	ENSMUSG00000074794	Arrdc3	AI450344|mKIAA1376	arrestin domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-59692666-4	chr10	59692556	59692756	+	892.68335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9907.0	NM_001359267	216001.0	Mm.27199	NM_144822	ENSMUSG00000020111	Micu1	C730016L05Rik|Calc|Cbara1	mitochondrial calcium uptake 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-56704706-4	chr6	56704585	56704785	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025520)	promoter-TSS (NM_025520)	14.0	NM_025520	66373.0	Mm.25642	NM_025520	ENSMUSG00000091625	Lsm5	2010208O10Rik|2310034K10Rik	LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-42148469-3	chr19	42148372	42148572	+	847.822205	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_183195, exon 1 of 2)	3' UTR (NM_183195, exon 1 of 2)	1083.0	NM_183195	277010.0	Mm.206250	NM_183195	ENSMUSG00000044345	Marveld1	AI504298|Mrvldc1	MARVEL (membrane-associating) domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55235613-3	chr19	55235580	55235780	+	680.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081076, intron 2 of 20)	intron (NM_001081076, intron 2 of 20)	5556.0	NM_001081076	73707.0	Mm.489987	NM_001081076	ENSMUSG00000055523	Gucy2g	2410077I05Rik|GC-G	guanylate cyclase 2g	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152521027-4	chr1	152520903	152521103	+	831.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 17 of 17)	intron (NM_016846, intron 17 of 17)	104214.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126747924-2	chr7	126747824	126748024	+	558.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	-11702.0	NM_011952	26417.0	Mm.8385	NM_011952	ENSMUSG00000063065	Mapk3	Erk-1|Erk1|Ert2|Esrk1|Mnk1|Mtap2k|Prkm3|p44|p44erk1|p44mapk	mitogen-activated protein kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4169542-4	chr19	4169443	4169643	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_134148, exon 9 of 10)	exon (NM_134148, exon 9 of 10)	5936.0	NM_134148	107239.0	Mm.482310	NM_134148	ENSMUSG00000075289	Carns1	AI790298|Atpgd1|mKIAA1394	carnosine synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-56090470-2	chr9	56090370	56090570	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011193, intron 1 of 14)	intron (NM_011193, intron 1 of 14)	494.0	NM_011193	19200.0	Mm.2534	NM_011193	ENSMUSG00000032322	Pstpip1	CD2BP1|def-2	proline-serine-threonine phosphatase-interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-31128216-2	chr7	31128079	31128279	+	648.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1156.0	NM_011322	20266.0	Mm.1418	NM_011322	ENSMUSG00000019194	Scn1b	-	sodium channel, voltage-gated, type I, beta	protein-coding	1.23688486834044	1.3435196970584	0.549520348805467	1.12945720812782	1.1626934846971	0.561955652365268	0.551770837444989	0.542991566930634	-1.74901137011348	0.304094024100682	0.805768573577736
Merged-chr18-53262031-2	chr18	53261931	53262131	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029394, intron 1 of 6)	C-rich|Low_complexity|Low_complexity	16369.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-92741031-3	chr13	92740931	92741131	+	565.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr	Intergenic	Intergenic	53787.0	NM_011582	21828.0	Mm.20865	NM_011582	ENSMUSG00000021702	Thbs4	TSP4	thrombospondin 4	protein-coding	0.936939299547263	0.886911423435894	0.37441867485405	0.368537329391877	0.948891894799693	0.896884164149521	0.376096359303607	0.369566239671028	0.040740651830711	0.982462279669983	1
Merged-chr6-72163889-2	chr6	72163789	72163989	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR31D_MM|LTR|ERVK	-40692.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-8499442-4	chr12	8499321	8499521	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007483, exon 1 of 1)	exon (NM_007483, exon 1 of 1)	588.0	NM_007483	11852.0	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-43521210-4	chr1	43521120	43521320	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010879, intron 2 of 4)	intron (NM_010879, intron 2 of 4)	75469.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98810079-1	chr11	98809979	98810179	+	1000.0	f0_c57.idr	promoter-TSS (NR_033551)	promoter-TSS (NR_033551)	10.0	NR_033551	100037262.0	Mm.442062	NR_033551	ENSMUSG00000075576	Gm12359	-	predicted gene 12359	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-79914835-2	chr7	79914735	79914935	+	702.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_009682, intron 3 of 5)	B2_Mm2|SINE|B2	5805.0	NM_009682	11778.0	Mm.220173	NM_009682	ENSMUSG00000063801	Ap3s2	[s]3B	adaptor-related protein complex 3, sigma 2 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-79875355-2	chr10	79875255	79875455	+	622.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181681)	promoter-TSS (NM_181681)	-721.0	NR_033210	216152.0	Mm.29678	NM_181681	ENSMUSG00000035835	Plppr3	Lppr3|Prg2	phospholipid phosphatase related 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-59436141-4	chr4	59436051	59436251	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163288, intron 1 of 16)	MTD|LTR|ERVL-MaLR	2482.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	3.66435796098937	2.1213920947641	3.81098111903935	2.72604752546713	2.36705707838588	2.5176802146676	2.42951347945046	2.74067098900158	-1.33156089139848	0.0688383006631312	0.393921429899642
Merged-chr5-136583857-4	chr5	136583751	136583951	+	951.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16361.0	NM_001291238	13047.0	Mm.320317	NM_009986	ENSMUSG00000029705	Cux1	CDP|Cutl1|Cux|Cux-1	cut-like homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-5597089-3	chr2	5597057	5597257	+	872.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290374, intron 1 of 9)	intron (NM_001290374, intron 1 of 9)	78889.0	NM_001290376	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	0.781691078604896	1.08154161716623	1.04745374834948	1.88518894790291	2.12405890186803	0.840087723229257	1.24523098480515	1.49021241011175	0.778289268268603	0.564112308393349	0.960367595640396
Merged-chr7-67957208-2	chr7	67957108	67957308	+	642.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010513, intron 1 of 20)	intron (NM_010513, intron 1 of 20)	4951.0	NM_010513	16001.0	Mm.275742	NM_010513	ENSMUSG00000005533	Igf1r	A330103N21Rik|CD221|D930020L01|IGF-1R|hyft	insulin-like growth factor I receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118223428-2	chr11	118223328	118223528	+	728.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	L1MC4a|LINE|L1	-10686.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-5873971-4	chr13	5873851	5874051	+	815.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12462.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-61855053-4	chr11	61854968	61855168	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013881)	promoter-TSS (NM_013881)	24.0	NM_013881	29869.0	Mm.162025	NM_013881	ENSMUSG00000004798	Ulk2	A830085I22Rik|AU015340|Unc51.2|mKIAA0623	unc-51 like kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-45278280-3	chr9	45278246	45278446	+	905.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9197.0	NM_001324486	16154.0	Mm.379327	NM_008348	ENSMUSG00000032089	Il10ra	AW553859|CDw210|CDw210a|IL-10R1|IL-10RA|Il10r|mIL-10R	interleukin 10 receptor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-21068827-3	chr14	21068714	21068914	+	836.805542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134079, intron 1 of 10)	intron (NM_134079, intron 1 of 10)	-7338.0	NM_001243041	11534.0	Mm.188734	NM_134079	ENSMUSG00000039197	Adk	2310026J05Rik|5033405D03Rik|AI255373|AI987814|Ak	adenosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-145191580-4	chr5	145191481	145191681	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020582)	promoter-TSS (NM_020582)	11.0	NM_020582	57423.0	Mm.133551	NM_020582	ENSMUSG00000038690	Atp5j2	1110019H14Rik	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F2	protein-coding	-1.53362919331644	-1.50201671710775	-1.51157659084044	-1.08120497225282	-1.53141005593807	-1.49994505258991	-1.50941244497383	-1.51802371459528	-1.94474658522739	0.577200604274218	1
Merged-chr10-36971474-1	chr10	36971374	36971574	+	597.5	f0_balb.idr	Intergenic	Intergenic	-3070.0	NM_008229	15182.0	Mm.19806	NM_008229	ENSMUSG00000019777	Hdac2	D10Wsu179e|YAF1|Yy1bp|mRPD3	histone deacetylase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10822073-2	chr19	10821973	10822173	+	571.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009852, intron 1 of 12)	intron (NM_009852, intron 1 of 12)	7985.0	NM_001037801	12511.0	Mm.290897	NM_009852	ENSMUSG00000024670	Cd6	-	CD6 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-105584167-3	chr5	105584064	105584264	+	650.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133897, intron 3 of 3)	intron (NM_133897, intron 3 of 3)	64693.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-24359511-3	chr2	24359405	24359605	+	909.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MERV1_LTR|LTR|ERV1	-8170.0	NM_001355231	215632.0	Mm.490434	NM_177611	ENSMUSG00000026979	Psd4	BC046518|EFA6B	pleckstrin and Sec7 domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-11183765-2	chr8	11183665	11183865	+	767.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-129040.0	NM_009932	12827.0	Mm.181021	NM_009932	ENSMUSG00000031503	Col4a2	Col4a-2	collagen, type IV, alpha 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-91242742-4	chr10	91242629	91242829	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22110.0	NR_151510	102633753.0	Mm.416936	NR_151510		4930534H03Rik	-	RIKEN cDNA 4930534H03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-16748279-2	chr1	16748179	16748379	+	591.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	59823.0	NM_001159711	17087.0	Mm.116844	NM_016923	ENSMUSG00000025779	Ly96	ESOP-1|MD-2|MD2	lymphocyte antigen 96	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101663997-2	chr11	101663897	101664097	+	606.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-1544.0	NM_025404	80981.0	Mm.266840	NM_025404	ENSMUSG00000034936	Arl4d	1110036H21Rik|ARL6|AW456149|Arf4l|Arfl4|Arl5	ADP-ribosylation factor-like 4D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85533227-4	chr12	85533116	85533316	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	59326.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64295410-2	chr5	64295310	64295510	+	724.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 11 of 18)	intron (NM_001289514, intron 11 of 18)	65053.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-138068820-4	chr4	138068750	138068950	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001256195, intron 4 of 34)	intron (NM_001256195, intron 4 of 34)	69668.0	NR_126429	73563.0	Mm.444294	NR_126429	ENSMUSG00000084804	1700095J12Rik	-	RIKEN cDNA 1700095J12 gene	ncRNA	-2.18375600819439	-2.15556918946382	-2.16409311609999	-2.17109492323169	-2.18177734563694	-2.01960173909294	-2.16216348594872	-2.16984160310277	0.759018020146679	0.829933115115583	1
Merged-chr9-21426246-4	chr9	21426152	21426352	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357721, intron 1 of 19)	intron (NM_001357721, intron 1 of 19)	1344.0	NM_001357719	13430.0	Mm.433257	NM_007871	ENSMUSG00000033335	Dnm2	Dyn2|Udnm|b2b2159Clo	dynamin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-88238174-2	chr1	88238074	88238274	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001281466, intron 14 of 41)	intron (NM_001281466, intron 14 of 41)	11154.0	NM_001281466	100040766.0	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	Heatr7b1	maestro heat-like repeat family member 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70790457-1	chr8	70790357	70790557	+	597.0	f1_c57bl6.idr	intron (NM_199308, intron 1 of 25)	ID_B1|SINE|B4	1976.0	NM_199308	546071.0	Mm.250731	NM_199308	ENSMUSG00000031833	Mast3	BC024265|mKIAA0561	microtubule associated serine/threonine kinase 3	protein-coding	-0.205163571312456	0.435856243122864	-0.19487409433604	-0.0299884066483738	-0.204206991343589	-0.18874470499487	-0.193770144516086	0.451521021323337	-0.204370053370922	0.931500270400774	1
Merged-chr15-89211689-3	chr15	89211586	89211786	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_027805, exon 1 of 8)	5' UTR (NM_027805, exon 1 of 8)	127.0	NM_027805	71474.0	Mm.184055	NM_026813	ENSMUSG00000036561	Ppp6r2	1110033O10Rik|8430411H09Rik|B230107H12Rik|Pp6r2|Saps2	protein phosphatase 6, regulatory subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75548092-4	chr11	75547995	75548195	+	944.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199284, intron 5 of 13)	L1ME3G|LINE|L1	-3334.0	NR_039553	100628624.0		NR_039553	ENSMUSG00000093100	Mir3971	mmu-mir-3971|mu-mir-3971	microRNA 3971	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135919014-2	chr5	135918914	135919114	+	594.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_018871, intron 1 of 1)	intron (NM_018871, intron 1 of 1)	15627.0	NM_018871	22628.0	Mm.233813	NM_018871	ENSMUSG00000051391	Ywhag	14-3-3gamma|D7Bwg1348e	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-118866679-4	chr10	118866586	118866786	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001014390, intron 2 of 2)	intron (NM_001014390, intron 2 of 2)	2217.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	4.08688286475348	4.72258189914587	3.94506951605446	3.52948238833148	4.11858637038651	4.03429101324055	4.16748201111193	3.54816780768757	-0.202191911267793	0.665109539410047	0.992297564393899
Merged-chr2-69897211-4	chr2	69897113	69897313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001303033)	promoter-TSS (NM_001303033)	-33.0	NM_001303033	68795.0	Mm.314576	NM_177783	ENSMUSG00000044308	Ubr3	1110059H15Rik|4833421P10Rik|A130030D10Rik|AA409735|AA414972|AA422631|AI646861|AU016126|Zfp650|Znf650	ubiquitin protein ligase E3 component n-recognin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32968251-2	chr2	32968151	32968351	+	913.625	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	4950.0	NR_002898	104367.0	Mm.250030	NR_002898	ENSMUSG00000065124	Snora65	MBII-351|Rnu65	small nucleolar RNA, H/ACA box 65	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-150586001-2	chr5	150585901	150586101	+	780.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133898, intron 1 of 4)	intron (NM_133898, intron 1 of 4)	8524.0	NM_133898	100637.0	Mm.279932	NM_133898	ENSMUSG00000041132	N4bp2l1	2410024N18Rik|AI428195|B230342M21Rik	NEDD4 binding protein 2-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125661718-1	chr6	125661618	125661818	+	616.0	f0_c57.idr	intron (NM_011708, intron 38 of 51)	intron (NM_011708, intron 38 of 51)	-28701.0	NM_153589	243634.0	Mm.333398	NM_153589	ENSMUSG00000038115	Ano2	BC033409|Tmem16b	anoctamin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-109474627-2	chr7	109474527	109474727	+	723.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001170913, intron 9 of 19)	B4A|SINE|B4	19111.0	NM_001170913	330627.0	Mm.183528	NM_181853	ENSMUSG00000031026	Trim66	Kiaa0298-hp|Tif1d	tripartite motif-containing 66	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-138065643-3	chr4	138065541	138065741	+	898.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001256195, intron 4 of 34)	intron (NM_001256195, intron 4 of 34)	67816.0	NM_001355700	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-58087266-1	chr19	58087166	58087366	+	614.0	f0_balb.idr	intron (NM_181415, intron 28 of 28)	RLTR45|LTR|ERVK	36099.0	NR_049196	100885835.0		NR_049196	ENSMUSG00000093757	Mir5623	Gm26068|mir-5623|mmu-mir-5623	microRNA 5623	ncRNA	1.85753520321811	1.5676610029903	3.30830156737135	3.35967334131371	3.14464582442145	3.52766158313325	3.84297572376027	2.1840308330907	0.883827571560313	0.273752199506259	0.777698237492367
Merged-chr10-79506864-4	chr10	79506774	79506974	+	997.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24216.0	NR_105874	102465548.0		NR_105874	ENSMUSG00000098414	Mir6909	Gm27727|mmu-mir-6909	microRNA 6909	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-23851551-2	chr17	23851439	23851639	+	651.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-2233.0	NM_027220	69814.0	Mm.244143	NM_027220	ENSMUSG00000048992	Prss32	2010001P08Rik|mT5|tryptase-5	protease, serine 32	protein-coding	1.12248329183074	1.82919083019865	1.64727715714981	0.967463655055558	1.41262712983355	1.42176003540243	1.88247928541233	1.6076228665244	0.515675594480391	0.664978304917529	0.992297564393899
Merged-chr18-23885929-3	chr18	23885804	23886004	+	923.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162941, intron 7 of 7)	tRNA-Ala-GCY_|tRNA|tRNA	-68784.0	NM_027007	69256.0	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30701173-2	chr2	30701073	30701273	+	626.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-20037.0	NR_037272	100526499.0		NR_037272	ENSMUSG00000093091	Mir3089	mir-3089|mmu-mir-3089	microRNA 3089	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-87426068-1	chr9	87425968	87426168	+	1000.0	f1_balb.idr	Intergenic	RMER1A|Other|Other	-170536.0	NM_199316	382090.0	Mm.335338	NM_199316	ENSMUSG00000056919	Cep162	4922501C03Rik|mKIAA1009	centrosomal protein 162	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-152766649-4	chr2	152766539	152766739	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289739, intron 3 of 4)	intron (NM_001289739, intron 3 of 4)	12466.0	NM_053091	84682.0	Mm.196668	NM_053091	ENSMUSG00000009876	Cox4i2	Cox4b|CoxIV-2	cytochrome c oxidase subunit 4I2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-54706761-2	chr6	54706661	54706861	+	589.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	25137.0	NM_001289740	68235.0	Mm.233860	NM_026629	ENSMUSG00000038065	Mturn	2410066E13Rik|AI448550|B230212L03Rik	maturin, neural progenitor differentiation regulator homolog (Xenopus)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115640603-3	chr11	115640506	115640706	+	782.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12311.0	NM_001252395	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-141064997-3	chr5	141064908	141065108	+	723.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-64412.0	NM_175362	108723.0	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-112696282-4	chr6	112696171	112696371	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167730, intron 1 of 13)	intron (NM_001167730, intron 1 of 13)	399.0	NM_021385	58186.0	Mm.103812	NM_021385	ENSMUSG00000030254	Rad18	2810024C04Rik|Rad18sc	RAD18 E3 ubiquitin protein ligase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-59906392-4	chr13	59906293	59906493	+	997.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	-83246.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	5.20311708809133	5.27923528523357	5.15817325730973	4.99587024580728	5.54900344458634	3.88698030519056	4.60134391578943	5.6252228608944	-0.0693881524126556	0.855728553373028	0.998431161219273
Merged-chr12-104174950-4	chr12	104174844	104175044	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21072.0	NM_008458	16625.0	Mm.422814	NM_008458	ENSMUSG00000066361	Serpina3c	1A1|Kalbp|Klkbp|spi2	serine (or cysteine) peptidase inhibitor, clade A, member 3C	protein-coding	6.0362968873453	6.0843539716887	6.1756327401761	6.51968594137013	5.84720638476157	5.00664879418825	6.4456647917545	5.34615763338307	-0.4898024427231	0.0953570358565802	0.478566808229468
Merged-chr2-76675248-4	chr2	76675163	76675363	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031256)	promoter-TSS (NM_031256)	-52.0	NM_031256	83435.0	Mm.41636	NM_031256	ENSMUSG00000002733	Plekha3	FAPP1	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-108980863-4	chr8	108980778	108980978	+	892.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	44018.0	NR_037295	100526511.0		NR_037295	ENSMUSG00000093241	Mir3108	mir-3108|mmu-mir-3108	microRNA 3108	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-37414649-4	chr3	37414548	37414748	+	886.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153561, intron 2 of 4)	intron (NM_153561, intron 2 of 4)	4948.0	NM_001291044	229228.0	Mm.436967	NM_153561	ENSMUSG00000050174	Nudt6	Asfgf2b	nudix (nucleoside diphosphate linked moiety X)-type motif 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34128357-2	chr17	34128360	34128560	+	770.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360530, intron 1 of 5)	B3|SINE|B2	2942.0	NM_001360530	14998.0	Mm.16373	NM_010386	ENSMUSG00000037649	H2-DMa	H-2Ma|H2-Ma	histocompatibility 2, class II, locus DMa	protein-coding	-0.536074528372749	-0.524788319225501	-0.528492444483358	-0.5313459469584	0.0307557989653078	-0.523952490228114	-0.527676014881988	0.00481505895087453	3.46454061671619	0.207129974887316	1
Merged-chr7-45055143-2	chr7	45055043	45055243	+	617.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_022999, intron 5 of 6)	intron (NM_022999, intron 5 of 6)	-2262.0	NM_175022	233210.0	Mm.219137	NM_175022	ENSMUSG00000046574	Prr12	6720469B10|BC058674	proline rich 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-100795715-4	chr13	100795605	100795805	+	840.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MERVL_2A-int|LTR|ERVL	-9219.0	NM_172301	268697.0	Mm.260114	NM_172301	ENSMUSG00000041431	Ccnb1	Ccnb1-rs1|Ccnb1-rs13|CycB1|Cycb-4|Cycb-5|Cycb1-rs1	cyclin B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-3703088-4	chr16	3702984	3703184	+	800.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RodERV21-int|LTR|ERV1	15040.0	NM_001161790	54483.0	Mm.143718	NM_019453	ENSMUSG00000022534	Mefv	FMF|TRIM20|pyrin	Mediterranean fever	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-164866954-4	chr2	164866867	164867067	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9259.0	NM_011125	18830.0	Mm.6105	NM_011125	ENSMUSG00000017754	Pltp	Bpife|OD107	phospholipid transfer protein	protein-coding	6.82155412297653	6.65007748911903	5.99001384791139	6.53691294083119	6.65980632704702	7.10731521140814	6.70340798193245	6.45208781780948	0.224938767182499	0.309698869998084	0.810477034078161
Merged-chr12-111653636-3	chr12	111653541	111653741	+	781.866638	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021516, intron 16 of 16)	intron (NM_021516, intron 16 of 16)	18697.0	NM_021273	12709.0	Mm.16831	NM_021273	ENSMUSG00000001270	Ckb	B-CK|Bck|CPK-B|Ck-3|Ck3|Ckbb	creatine kinase, brain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-54916048-1	chr18	54915948	54916148	+	812.0	f0_balb.idr	intron (NM_001360787, intron 2 of 8)	intron (NM_001360787, intron 2 of 8)	74132.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-24336018-4	chr18	24335925	24336125	+	811.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3341.0	NR_152129	328919.0	Mm.118671	NR_152129		Gm38410	9530053H22	predicted gene, 38410	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84982823-4	chr8	84982712	84982912	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4064.0	NM_008416	16477.0	Mm.1167	NM_008416	ENSMUSG00000052837	Junb	-	jun B proto-oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-118437438-4	chr4	118437337	118437537	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023223)	promoter-TSS (NM_023223)	-94.0	NM_023223	107995.0	Mm.261764	NM_023223	ENSMUSG00000006398	Cdc20	2310042N09Rik|C87100|p55CDC	cell division cycle 20	protein-coding	-0.0129232005154876	0.00524039562535578	-0.000690195196624138	0.436203131971435	-0.0117838540664692	0.00657471045128327	0.799541590287371	0.442274909163557	1.70447559449858	0.445972540487016	1
Merged-chr17-74717688-4	chr17	74717605	74717805	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_152817)	promoter-TSS (NM_152817)	-45.0	NM_152817	74196.0	Mm.209503	NM_152817	ENSMUSG00000024078	Ttc27	2610511O17Rik	tetratricopeptide repeat domain 27	protein-coding	4.16029846152995	4.06494036174868	3.50367792709547	2.59977285371602	3.83666443326418	3.96253229375764	2.86241104880825	3.5816138914412	-0.134035153978329	0.816638355199129	0.998431161219273
Merged-chr13-55099513-2	chr13	55099413	55099613	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001293660, intron 1 of 12)	intron (NM_001293660, intron 1 of 12)	787.0	NR_121592	20184.0	Mm.259301	NM_011307	ENSMUSG00000025878	Uimc1	9430016E08Rik|D330018D10Rik|D630032M02Rik|RIP110|Rxrip110	ubiquitin interaction motif containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-7772503-2	chr9	7772403	7772603	+	568.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133739, intron 2 of 4)	intron (NM_133739, intron 2 of 4)	8338.0	NR_152989	71929.0	Mm.283293	NM_133739	ENSMUSG00000050912	Tmem123	2310075C12Rik	transmembrane protein 123	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91070530-7	chr2	91070462	91070662	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026721)	promoter-TSS (NM_026721)	-247.0	NM_001290765	68427.0	Mm.192375	NM_026721	ENSMUSG00000002105	Slc39a13	1100001L14Rik|AA387663|ZIP-13|ZIP13	solute carrier family 39 (metal ion transporter), member 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-100443704-3	chr15	100443604	100443804	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	20511.0	NR_040351	432982.0	Mm.234608	NM_001034883	ENSMUSG00000087444	Gm5475	EG432982	predicted gene 5475	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-32331233-4	chr11	32331208	32331408	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16503.0	NM_177364	268396.0	Mm.227616	NM_177364	ENSMUSG00000040711	Sh3pxd2b	G431001E03Rik|TSK4|fad49	SH3 and PX domains 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55801505-2	chr19	55801405	55801605	+	623.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001331146, intron 4 of 14)	intron (NM_001331146, intron 4 of 14)	59695.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-4448267-2	chr2	4448167	4448367	+	747.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 2 of 23)	RLTR20C2_MM|LTR|ERVK	47291.0	NM_001177843	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-57708953-2	chr9	57708853	57709053	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153799, intron 1 of 6)	CpG	384.0	NM_153799	353190.0	Mm.268104	NM_153799	ENSMUSG00000038957	Edc3	AA517853|Lsm16|Yjdc	enhancer of mRNA decapping 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-8523892-2	chr11	8523792	8523992	+	717.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 13 of 30)	intron (NM_001083587, intron 13 of 30)	140643.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-95843157-4	chr11	95843067	95843267	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163464)	promoter-TSS (NM_001163464)	-78.0	NM_001284397	14710.0	Mm.46299	NM_023121	ENSMUSG00000038811	Gngt2	AV096488	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-51683660-1	chr15	51683560	51683760	+	591.0	f0_balb.idr	Intergenic	Intergenic	181801.0	NM_080635	68135.0	Mm.289800	NM_080635	ENSMUSG00000022312	Eif3h	1110008A16Rik|40kD|9430017H16Rik|EIF3-P40|EIF3-gamma|Eif3s3	eukaryotic translation initiation factor 3, subunit H	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-9224826-2	chr5	9224726	9224926	+	557.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	-41292.0	NR_153370	231014.0	Mm.130063	NM_172706	ENSMUSG00000056004	9330182L06Rik	Eig121l	RIKEN cDNA 9330182L06 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-51089531-4	chr14	51089411	51089611	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	tRNA-Tyr-TAC|tRNA|tRNA	-1566.0	NM_001161731	11727.0	Mm.202665	NM_007447	ENSMUSG00000072115	Ang	AI385586|Ang1|Rnase5|Rnase5a	angiogenin, ribonuclease, RNase A family, 5	protein-coding	6.15607835876001	5.44013551467471	4.88886412738069	5.92404065405101	6.08289384275852	5.60553767548181	6.01783397611958	5.6733821769002	0.189786621601384	0.522436457644549	0.947836760490745
Merged-chr4-148085845-2	chr4	148085745	148085945	+	655.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301281, intron 1 of 4)	intron (NM_001301281, intron 1 of 4)	2219.0	NM_009642	11610.0	Mm.46247	NM_009642	ENSMUSG00000029007	Agtrap	3300002E14Rik|AT1R|Atrap|D4Wsu124e	angiotensin II, type I receptor-associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-112774459-3	chr10	112774363	112774563	+	860.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040579, intron 5 of 6)	L1MEf|LINE|L1	47537.0	NR_040579	69355.0	Mm.84337	NR_040579	ENSMUSG00000100314	1700010J16Rik	-	RIKEN cDNA 1700010J16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-155826082-3	chr2	155825979	155826179	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010579, intron 2 of 5)	intron (NM_010579, intron 2 of 5)	846.0	NM_010579	16418.0	Mm.271674	NM_010579	ENSMUSG00000027613	Eif6	1110004P11|AA408895|CAB|Itgb4bp|eIF-6|imc-415|p27(BBP)|p27BBP	eukaryotic translation initiation factor 6	protein-coding	3.34974427551219	2.6944304716097	2.30103501980596	3.04703617380068	2.42034758742823	3.34614512148454	2.9717788127455	2.88169929233763	0.041427758605905	0.952200083409628	0.998431161219273
Merged-chr2-32571267-2	chr2	32571167	32571367	+	949.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_010073, exon 2 of 4)	exon (NM_010073, exon 2 of 4)	409.0	NM_010073	13481.0	Mm.22001	NM_010073	ENSMUSG00000026810	Dpm2	AW557993|R75484	dolichol-phosphate (beta-D) mannosyltransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-143821374-2	chr7	143821274	143821474	+	673.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030221, intron 1 of 20)	intron (NM_030221, intron 1 of 20)	1478.0	NM_001308095	78914.0	Mm.35104	NM_030221	ENSMUSG00000031090	Nadsyn1	9130012B15Rik	NAD synthetase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-77246349-4	chr5	77246262	77246462	+	970.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19132.0	NM_011263	19712.0	Mm.28840	NM_011263	ENSMUSG00000029249	Rest	2610008J04Rik|AA407358|NRSF|REST4	RE1-silencing transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-91343034-3	chr8	91342934	91343134	+	832.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011936, intron 1 of 8)	intron (NM_011936, intron 1 of 8)	29509.0	NM_011936	26383.0	Mm.4375	NM_011936	ENSMUSG00000055932	Fto	AW743446|mKIAA1752	fat mass and obesity associated	protein-coding	2.70729326965006	3.33529979902472	3.38760315928313	3.36802584713555	2.92122369766863	3.0581269915586	2.7122408232234	3.15450732847094	-0.441087667626678	0.474178732188688	0.926577946129404
Merged-chr11-79260184-2	chr11	79260084	79260284	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5489.0	NM_019653	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-19966353-2	chr11	19966253	19966453	+	864.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_033523, intron 1 of 5)	intron (NM_033523, intron 1 of 5)	41911.0	NM_033523	114716.0	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-100852079-2	chr13	100851979	100852179	+	779.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-18652.0	NM_022885	69048.0	Mm.402215	NM_022885	ENSMUSG00000021629	Slc30a5	1810010K08Rik|AF233321|ZNT5|ZTL1|ZnT-5|Zntl1	solute carrier family 30 (zinc transporter), member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-113810243-4	chr5	113810153	113810353	+	950.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17B|LTR|ERVK	-9901.0	NM_146162	231633.0	Mm.41681	NM_146162	ENSMUSG00000054675	Tmem119	AW208946|BC025600|obif	transmembrane protein 119	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-92680239-4	chr13	92680140	92680340	+	845.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172588, intron 2 of 11)	intron (NM_172588, intron 2 of 11)	69102.0	NM_172588	218442.0	Mm.297970	NM_172588	ENSMUSG00000021703	Serinc5	A130038L21Rik|AIGP3|C86123|TPO1	serine incorporator 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-110246455-2	chr9	110246355	110246555	+	820.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001166273, exon 2 of 5)	exon (NM_001166273, exon 2 of 5)	2672.0	NM_013884	29873.0	Mm.38496	NM_013884	ENSMUSG00000032482	Cspg5	Caleb|Ngc	chondroitin sulfate proteoglycan 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-69114310-2	chr3	69114210	69114410	+	599.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008467, intron 1 of 16)	intron (NM_008467, intron 1 of 16)	12782.0	NM_008467	16649.0	Mm.30601	NM_008467	ENSMUSG00000027782	Kpna4	1110058D08Rik|IPOA3	karyopherin (importin) alpha 4	protein-coding	-0.201205654959482	-0.187109727771016	0.469683736563934	0.10480014655414	-0.200327145818544	-0.186066801343128	-0.190713850131582	0.230399084333218	-1.28289014420999	0.592851354791482	1
Merged-chr1-92908397-2	chr1	92908297	92908497	+	593.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_138577)	TTS (NR_138577)	1408.0	NM_175118	67446.0	Mm.46179	NM_175118	ENSMUSG00000047067	Dusp28	0710001B24Rik|AV005521	dual specificity phosphatase 28	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-31687479-2	chr15	31687379	31687579	+	556.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR44A|LTR|ERVK	85363.0	NM_001356313	68073.0	Mm.119185	NM_026546	ENSMUSG00000039065	Fam173b	A930016P21Rik|AA987072	family with sequence similarity 173, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-127430526-2	chr2	127430426	127430626	+	704.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081089, intron 6 of 21)	intron (NM_001081089, intron 6 of 21)	5327.0	NM_001081089	215456.0	Mm.440454	NM_001081089	ENSMUSG00000046338	Gpat2	A530057A03Rik|Gm116|xGPAT1	glycerol-3-phosphate acyltransferase 2, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-131994993-2	chr2	131994893	131995093	+	787.25	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_175445, exon 11 of 11)	3' UTR (NM_175445, exon 11 of 11)	34995.0	NM_175445	215653.0	Mm.204737	NM_175445	ENSMUSG00000027339	Rassf2	3830431H01Rik|9030412M04Rik|AI852669|AW495050	Ras association (RalGDS/AF-6) domain family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46498978-2	chr19	46498878	46499078	+	682.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2670.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-31081187-3	chr17	31081078	31081278	+	969.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009593, intron 2 of 14)	intron (NM_009593, intron 2 of 14)	23484.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-55190388-4	chr13	55190308	55190508	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-19374.0	NM_008739	18193.0	Mm.168965	NM_008739	ENSMUSG00000021488	Nsd1	AI528500|KMT3B	nuclear receptor-binding SET-domain protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125317567-2	chr6	125317467	125317667	+	678.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3682.0	NM_010736	17000.0	Mm.3122	NM_010736	ENSMUSG00000030339	Ltbr	AI256028|LTbetaR|Ltar|TNF-R-III|TNFCR|TNFR-RP|TNFR2-RP|TNFRrp|Tnfbr|Tnfrsf3	lymphotoxin B receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119462754-1	chr11	119462654	119462854	+	1000.0	f1_balb.idr	non-coding (NR_153849, exon 4 of 4)	non-coding (NR_153849, exon 4 of 4)	28481.0	NR_153849	78439.0	Mm.440446	NR_153849	ENSMUSG00000109408	A930037H05Rik	Gm44935	RIKEN cDNA A930037H05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125009691-4	chr6	125009629	125009829	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347452)	promoter-TSS (NM_001347452)	60.0	NM_175557	269800.0	Mm.108677	NM_175557	ENSMUSG00000038346	Zfp384	BB163993|C130073D16Rik|Ciz|NP|Nmp4	zinc finger protein 384	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-40994243-4	chr19	40994138	40994338	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_008528, exon 1 of 17)	5' UTR (NM_008528, exon 1 of 17)	297.0	NM_008528	17060.0	Mm.9749	NM_008528	ENSMUSG00000061132	Blnk	BASH|Bca|Ly-57|Ly57|Lyw-57|SLP-65	B cell linker	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33691509-4	chr16	33691403	33691603	+	994.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175256, intron 1 of 14)	intron (NM_175256, intron 1 of 14)	7037.0	NM_175256	77446.0	Mm.245741	NM_172934	ENSMUSG00000075254	Heg1	4632417D23Rik|5530401I02Rik|9530025L16Rik|BC038614|Gm629	heart development protein with EGF-like domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-61132536-2	chr18	61132436	61132636	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_178277, exon 20 of 20)	exon (NM_178277, exon 20 of 20)	15068.0	NR_105949	102466212.0		NR_105949	ENSMUSG00000098389	Mir6983	Gm27496|mmu-mir-6983	microRNA 6983	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-142623465-2	chr3	142623365	142623565	+	544.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_105802)	TTS (NR_105802)	481.0	NR_105802	102465200.0		NR_105802	ENSMUSG00000098871	Mir6381	Gm27963|mmu-mir-6381	microRNA 6381	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-29514538-4	chr11	29514460	29514660	+	899.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163454, intron 1 of 2)	B3A|SINE|B2	473.0	NM_026465	67939.0	Mm.251087	NM_026465	ENSMUSG00000032673	Prorsd1	2010316F05Rik|Ncrna00117|Prdxdd1	prolyl-tRNA synthetase domain containing 1	protein-coding	0.333815609642948	0.355084011308911	0.348124521616586	0.647570523051857	0.482015681795327	0.857163665628021	0.928286122355998	0.883951987452624	2.66250773481427	0.144695721856914	1
Merged-chr8-3514158-2	chr8	3514058	3514258	+	655.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_053177, intron 12 of 13)	intron (NM_053177, intron 12 of 13)	-1226.0	NM_001359122	50767.0	Mm.23085	NM_015801	ENSMUSG00000004565	Pnpla6	AI661849|MSws|Nte	patatin-like phospholipase domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-159731553-2	chr2	159731459	159731659	+	570.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MamRep38|DNA|hAT	-215782.0	NR_040498	71081.0	Mm.383491	NR_040498	ENSMUSG00000085198	4933416E03Rik	-	RIKEN cDNA 4933416E03 gene	ncRNA	0.26921558515449	-0.0693150465804677	0.092410579252406	-0.0772774267976809	0.532953078355238	-0.0682977470127349	-0.0728254519116395	0.212664273832639	0.982279250852987	0.653295336802565	1
Merged-chr7-63898013-2	chr7	63897913	63898113	+	601.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021366, intron 1 of 1)	intron (NM_021366, intron 1 of 1)	-18844.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-165718532-4	chr1	165718414	165718614	+	938.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10420.0	NM_178593	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-127949078-4	chr3	127948990	127949190	+	806.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040552, intron 4 of 4)	intron (NR_040552, intron 4 of 4)	32919.0	NR_040552	329753.0	Mm.119720	NR_040552	ENSMUSG00000104763	9830132P13Rik	9830132P13	RIKEN cDNA 9830132P13 gene	ncRNA	2.54520119419858	2.86225976713569	1.31901902961142	2.31113696857282	2.09631289317046	1.36153018431006	2.70145704129702	2.43003690606571	-0.298020785971199	0.761883181867452	0.998431161219273
Merged-chr17-27702667-3	chr17	27702592	27702792	+	703.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286743, intron 2 of 9)	CpG	17453.0	NM_178365	23969.0	Mm.4926	NM_011861	ENSMUSG00000040276	Pacsin1	A830061D09Rik|H74|mKIAA1379|syndapin	protein kinase C and casein kinase substrate in neurons 1	protein-coding	0.777919557761672	0.478376078997681	0.465994541215374	1.57926352860964	0.78660864184557	0.481132365473835	0.468747522887049	1.59081969668331	0.0306325931611556	0.985646374379412	0.998431161219273
Merged-chr13-94702811-4	chr13	94702817	94703017	+	942.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-86026.0	NM_009321	21371.0	Mm.379025	NM_009321	ENSMUSG00000042043	Tbca	Tbca13	tubulin cofactor A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-78068680-2	chr10	78068580	78068780	+	853.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015790)	promoter-TSS (NM_015790)	-688.0	NM_015790	50723.0	Mm.17819	NM_015790	ENSMUSG00000000732	Icosl	AU044799|B7-H2|B7RP-1|B7h|BG071784|GI50|GL50|GL50-B|ICOS-L|Icoslg|LICOS|Ly115l|mKIAA0653	icos ligand	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119431563-2	chr11	119431463	119431663	+	626.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41091.0	NR_035453	100316690.0		NR_035453	ENSMUSG00000088015	Mir1932	mir-1932|mmu-mir-1932	microRNA 1932	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-15297477-4	chr10	15297361	15297561	+	958.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-494316.0	NR_131087	77538.0	Mm.128235	NR_131087	ENSMUSG00000112227	C330004P14Rik	-	RIKEN cDNA C330004P14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-184606083-4	chr1	184605986	184606186	+	882.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48395.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-55014323-2	chr13	55014223	55014423	+	581.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001206390, exon 6 of 19)	exon (NM_001206390, exon 6 of 19)	6496.0	NM_001206390	212032.0	Mm.267479	NM_001033245	ENSMUSG00000025877	Hk3	HK III|HK-III	hexokinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-126103295-4	chr4	126103198	126103398	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145827)	promoter-TSS (NM_001145827)	-659.0	NM_028800	74178.0	Mm.440269	NM_028800	ENSMUSG00000042608	Stk40	2310004N11Rik|AI428792	serine/threonine kinase 40	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-160070575-4	chr2	160070481	160070681	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53928.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	3.15321588569253	3.09295617972875	3.404943586011	2.90928250487155	2.5808359859106	2.88962973515898	3.01438814482081	2.71033651106449	-0.633204887494323	0.317921475958903	0.8209499039712
Merged-chr8-71293318-2	chr8	71293204	71293404	+	674.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001142322, intron 2 of 39)	B4|SINE|B4	20590.0	NM_001142323	17925.0	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	-0.94771622011655	-0.736717436797021	-0.94143208569836	-0.943794029673449	-0.947132691407022	-0.928759858418983	-0.940756991868087	-0.286758079472543	2.02465548100758	0.508836722209445	1
Merged-chr9-66882047-4	chr9	66881959	66882159	+	985.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	37646.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-62640047-3	chr2	62639929	62640129	+	677.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164477, intron 1 of 14)	intron (NM_001164477, intron 1 of 14)	6226.0	NM_027835	71586.0	Mm.136224	NM_027835	ENSMUSG00000026896	Ifih1	9130009C22Rik|Helicard|Hlcd|MDA5|RLR-2	interferon induced with helicase C domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-45934889-4	chr8	45934807	45935007	+	924.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033246, intron 1 of 6)	intron (NM_001033246, intron 1 of 6)	258.0	NM_001033246	212392.0	Mm.296649	NM_001033246	ENSMUSG00000071104	Ccdc110	Gm172	coiled-coil domain containing 110	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-130667736-4	chr2	130667641	130667841	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025922)	promoter-TSS (NM_025922)	-100.0	NM_025922	16434.0	Mm.21399	NM_025922	ENSMUSG00000074797	Itpa	2010016I08Rik|AU020102|ITPase|Itp|NTPase	inosine triphosphatase (nucleoside triphosphate pyrophosphatase)	protein-coding	3.09731692194476	2.86964137217238	4.12818307429738	2.80474251759879	3.38774897685729	2.42035009369112	2.13588633593347	3.02614819661224	-0.842162960889823	0.232066981868164	0.726855111848477
Merged-chr4-107167918-1	chr4	107167818	107168018	+	566.0	f0_balb.idr	intron (NM_025617, intron 2 of 4)	intron (NM_025617, intron 2 of 4)	10448.0	NM_025617	66526.0	Mm.246956	NM_025617	ENSMUSG00000028619	Tceanc2	2210010B22Rik|2210012G02Rik|6330404A07Rik|AU015593|Tdeanc2	transcription elongation factor A (SII) N-terminal and central domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30048849-4	chr2	30048754	30048954	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001008498)	promoter-TSS (NM_001008498)	25.0	NM_001008498	71820.0	Mm.88053	NM_001008498	ENSMUSG00000039715	Wdr34	3200002I06Rik	WD repeat domain 34	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-92988276-1	chr14	92988176	92988376	+	618.0	f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	902393.0	NM_001271800	211712.0	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding	1.08032593634255	0.755527259018082	2.44821521198677	0.719621942833446	1.3751751963951	0.75993627179369	1.19943368025003	1.70021017255137	-0.606197207697247	0.665508193956233	0.992380258859526
Merged-chr18-60714885-4	chr18	60714769	60714969	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001348146, intron 1 of 6)	intron (NM_001348146, intron 1 of 6)	12697.0	NM_001348103	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25282431-3	chr7	25282338	25282538	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_027882, exon 1 of 20)	5' UTR (NM_027882, exon 1 of 20)	259.0	NM_027882	71722.0	Mm.28833	NM_027882	ENSMUSG00000005442	Cic	1200010B10Rik|mKIAA0306	capicua transcriptional repressor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84894634-2	chr8	84894568	84894768	+	676.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008097)	promoter-TSS (NM_008097)	-747.0	NM_008097	270076.0	Mm.2475	NM_008097	ENSMUSG00000003809	Gcdh	9030411L18|AI266902|D17825|GCD	glutaryl-Coenzyme A dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81179975-2	chr10	81179875	81180075	+	656.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_028549)	TTS (NR_028549)	1014.0	NR_028549	100217454.0		NR_028549	ENSMUSG00000064441	Snord37	MBII-376	small nucleolar RNA, C/D box 37	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-178407755-2	chr2	178407655	178407855	+	661.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177191)	promoter-TSS (NM_177191)	-97.0	NM_177191	320558.0	Mm.70781	NM_177191	ENSMUSG00000060445	Sycp2	3830402K23Rik|4930518F03Rik	synaptonemal complex protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34038721-2	chr17	34038621	34038821	+	561.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001317722)	promoter-TSS (NM_001317722)	-417.0	NM_009926	12815.0	Mm.20230	NM_009926	ENSMUSG00000024330	Col11a2	-	collagen, type XI, alpha 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-95844270-2	chr4	95844170	95844370	+	861.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113412, intron 13 of 15)	intron (NM_001113412, intron 13 of 15)	122765.0	NR_045777	319247.0	Mm.473527	NM_175680	ENSMUSG00000044125	9530080O11Rik	-	RIKEN cDNA 9530080O11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45399786-2	chr7	45399686	45399886	+	719.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER2|LTR|ERV1	-4044.0	NR_126538	20637.0	Mm.216386	NM_009224	ENSMUSG00000063511	Snrnp70	2700022N21Rik|3200002N22Rik|AI325098|R74807|Rnu1p70|Rnulp70|Snrp70|Srnp70|U1-70|U1-70K	small nuclear ribonucleoprotein 70 (U1)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126808911-2	chr8	126808811	126809011	+	544.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40109.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41332402-4	chr19	41332270	41332470	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 2 of 16)	intron (NM_031376, intron 2 of 16)	52700.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	4.80248477093096	4.60054786921952	4.74408573435568	4.66500119936802	5.0123108784233	4.68551380320915	4.11670972878983	4.6444594953768	-0.0595090856075986	0.868943097997773	0.998431161219273
Merged-chr9-99499582-4	chr9	99499485	99499685	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028768, intron 15 of 21)	intron (NM_028768, intron 15 of 21)	29164.0	NR_028123	69797.0	Mm.307159	NR_028123	ENSMUSG00000046242	1600029I14Rik	-	RIKEN cDNA 1600029I14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-76527510-7	chr16	76527409	76527609	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21286.0	NR_155449	102632730.0		NR_155449		Gm30726	-	predicted gene, 30726	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-31054774-4	chr5	31054584	31054784	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023525)	promoter-TSS (NM_023525)	-96.0	NM_023525	69719.0	Mm.305535	NM_023525	ENSMUSG00000013629	Cad	2410008J01Rik|AU018859|Cpad	carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-114774711-4	chr5	114774615	114774815	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026718)	promoter-TSS (NM_026718)	268.0	NR_027872	67642.0	Mm.482535	NM_175120	ENSMUSG00000092183	4930515G01Rik	-	RIKEN cDNA 4930515G01 gene	ncRNA	1.9271944116091	1.92746925028979	2.60777668869432	1.80303002088302	2.35346247343994	1.13033158535543	1.10589743434442	1.31510811403027	-1.31016994232308	0.250275670059886	0.748509191602971
Merged-chr6-84008593-2	chr6	84008493	84008693	+	886.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001077694)	promoter-TSS (NM_001077694)	-5.0	NM_001077694	26903.0	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-193905936-3	chr1	193905828	193906028	+	938.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	316831.0	NR_040477	74942.0	Mm.60689	NR_040477	ENSMUSG00000103692	4930503O07Rik	-	RIKEN cDNA 4930503O07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-93379476-3	chr15	93379377	93379577	+	973.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	18857.0	NM_001347097	67197.0	Mm.293181	NM_026025	ENSMUSG00000022635	Zcrb1	2700088M22Rik|Madp-1	zinc finger CCHC-type and RNA binding motif 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-151008690-2	chr2	151008590	151008790	+	690.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_207204, intron 1 of 23)	intron (NM_207204, intron 1 of 23)	708.0	NM_207204	78177.0	Mm.120911	NM_207204	ENSMUSG00000068115	Ninl	4930519N13Rik|Gm1004|Gm1634|mKIAA0980	ninein-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-86891206-2	chr12	86891106	86891306	+	618.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6392.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-109676586-4	chr4	109676495	109676695	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007983)	promoter-TSS (NM_007983)	-32.0	NM_007983	14084.0	Mm.318259	NM_007983	ENSMUSG00000010517	Faf1	AA408698|Dffrx|Fam	Fas-associated factor 1	protein-coding	4.70959602830324	1.99094552479104	4.30214237314561	4.34294313849667	4.30205572413172	4.41754005246215	4.15281743215788	5.3768586721989	0.653743976903563	0.472537791208398	0.926125823511231
Merged-chr16-87625531-4	chr16	87625430	87625630	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	72200.0	NM_144854	224419.0	Mm.194466	NM_144854	ENSMUSG00000025610	Map3k7cl	C21orf7|ORF63|Tak1l	Map3k7 C-terminal like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46930640-2	chr8	46930540	46930740	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56247.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-103375394-2	chr5	103375294	103375494	+	562.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28796.0	NR_152117	75519.0	Mm.416851	NR_152117	ENSMUSG00000105426	1700021F02Rik	Gm42618	RIKEN cDNA 1700021F02 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-120403751-2	chr14	120403651	120403851	+	721.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360378, intron 7 of 8)	intron (NM_001360378, intron 7 of 8)	-74710.0	NM_029519	76108.0	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-97908305-4	chr15	97908150	97908350	+	979.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009504)	promoter-TSS (NM_009504)	46.0	NM_009504	22337.0	Mm.245084	NM_009504	ENSMUSG00000022479	Vdr	Nr1i1	vitamin D (1,25-dihydroxyvitamin D3) receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-114854884-1	chr5	114854784	114854984	+	545.0	f1_balb.idr	intron (NM_026263, intron 1 of 11)	intron (NM_026263, intron 1 of 11)	1170.0	NM_026263	67593.0	Mm.251409	NM_026263	ENSMUSG00000029564	4930519G04Rik	1700014B12Rik	RIKEN cDNA 4930519G04 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-7502907-4	chr3	7502805	7503005	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173181)	promoter-TSS (NM_173181)	-521.0	NM_173181	67306.0	Mm.332366	NM_173181	ENSMUSG00000043542	Zc2hc1a	3110050N22Rik|AI790358|AU023959|Fam164a	zinc finger, C2HC-type containing 1A	protein-coding	4.16967476015631	5.337150489206	4.34439068650973	3.68107442056272	4.20315196950917	5.30899363424652	4.37689713532598	3.70117204716922	0.00432202451274509	0.992949573224927	0.998431161219273
Merged-chr2-116955114-4	chr2	116955007	116955207	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54955.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-101700223-2	chr13	101700123	101700323	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077495, intron 7 of 15)	intron (NM_001077495, intron 7 of 15)	-7593.0	NM_001024955	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-125444882-4	chr7	125444767	125444967	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029842, intron 1 of 7)	CpG	247.0	NM_029842	77035.0	Mm.307239	NM_029842	ENSMUSG00000030752	Kdm8	3110005O21Rik|Jmjd5	lysine (K)-specific demethylase 8	protein-coding	7.12784387037687	6.16149904697955	6.40204170266318	6.22875554097955	6.85477157071487	6.50949184465559	7.24318813720522	6.64128352098846	0.314724845545161	0.196925289363371	0.678809506353684
Merged-chr12-73680408-4	chr12	73680315	73680515	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008856, intron 2 of 13)	intron (NM_008856, intron 2 of 13)	95619.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-124146509-4	chr9	124146403	124146603	+	957.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	24960.0	NM_009917	12774.0	Mm.14302	NM_009917	ENSMUSG00000079227	Ccr5	AM4-7|CD195|Cmkbr5	chemokine (C-C motif) receptor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-87973287-2	chr17	87973187	87973387	+	567.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1763.0	NM_010830	17688.0	Mm.18210	NM_010830	ENSMUSG00000005370	Msh6	AU044881|AW550279|GTBP|Gtmbp	mutS homolog 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-67589065-4	chr11	67588948	67589148	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109657, intron 1 of 13)	intron (NM_001109657, intron 1 of 13)	2548.0	NM_001109657	14457.0	Mm.40338	NM_008088	ENSMUSG00000033066	Gas7	AW124766|B230343A10Rik|Gas7-cb	growth arrest specific 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-79979049-2	chr10	79978949	79979149	+	945.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359632, intron 4 of 9)	intron (NM_001359632, intron 4 of 9)	5211.0	NM_001359632	216157.0	Mm.29442	NM_001003949	ENSMUSG00000013858	Tmem259	AC087114.7gm2|ORF61|R32184_3|mFLJ00277	transmembrane protein 259	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-125457169-2	chr1	125457069	125457269	+	731.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-21442.0	NM_001205385	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-57725766-4	chr10	57725736	57725936	+	693.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008863, intron 4 of 5)	intron (NM_008863, intron 4 of 5)	-59087.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-74414858-3	chr17	74414770	74414970	+	800.861084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252478, intron 10 of 13)	intron (NM_001252478, intron 10 of 13)	19262.0	NM_144798	210148.0	Mm.243943	NM_144798	ENSMUSG00000024069	Slc30a6	9530029F08Rik|ZnT6	solute carrier family 30 (zinc transporter), member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191153264-4	chr1	191153161	191153361	+	932.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11556.0	NM_001109759	619288.0	Mm.61148	NM_001109759	ENSMUSG00000091017	Fam71a	4933417M04Rik|GARI-L4	family with sequence similarity 71, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-98513477-4	chr6	98513376	98513576	+	966.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-170722.0	NM_001128092	330390.0	Mm.484161	NM_001128092	ENSMUSG00000090667	Gm765	-	predicted gene 765	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-119966909-4	chr4	119966808	119967008	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010657, intron 1 of 8)	intron (NM_010657, intron 1 of 8)	152230.0	NM_010657	16656.0	Mm.302758	NM_010657	ENSMUSG00000028634	Hivep3	2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3	human immunodeficiency virus type I enhancer binding protein 3	protein-coding	5.612355553524	5.75786495183213	5.93068252529459	6.02898430876336	5.85663861768258	5.87316483658525	5.76119559043372	5.92180851724879	0.0167644596418129	0.943703325505917	0.998431161219273
Merged-chr18-51191986-2	chr18	51191886	51192086	+	595.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081224, intron 1 of 1)	intron (NM_001081224, intron 1 of 1)	74088.0	NM_001081224	71373.0	Mm.63546	NM_001081224	ENSMUSG00000073565	Prr16	5430406M13Rik|AI607429	proline rich 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127063453-4	chr10	127063355	127063555	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009870)	promoter-TSS (NM_009870)	-80.0	NM_009870	12567.0	Mm.6839	NM_009870	ENSMUSG00000006728	Cdk4	Crk3	cyclin-dependent kinase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4932053-2	chr16	4931953	4932153	+	841.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357062, intron 15 of 17)	intron (NM_001357062, intron 15 of 17)	-7058.0	NM_001316715	66911.0	Mm.428698	NM_025839	ENSMUSG00000022516	Nudt16l1	1110001K21Rik|5330437I08Rik|Sdos	nudix (nucleoside diphosphate linked moiety X)-type motif 16-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-22354267-2	chr6	22354167	22354367	+	813.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_138587, intron 1 of 9)	intron (NM_138587, intron 1 of 9)	1814.0	NM_138587	27999.0	Mm.490307	NM_138587	ENSMUSG00000029672	Fam3c	D6Wsu176e|Ilei	family with sequence similarity 3, member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-54711106-3	chr11	54710998	54711198	+	880.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	76605.0	NM_178626	72729.0	Mm.29476	NM_178626	ENSMUSG00000052298	Cdc42se2	2810404F18Rik|AA408783|AA536669|SPEC2	CDC42 small effector 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-24653264-4	chr16	24653177	24653377	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 5 of 12)	intron (NM_178665, intron 5 of 12)	-68578.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-21368585-4	chr12	21368577	21368777	+	996.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291871, intron 1 of 18)	intron (NM_001291871, intron 1 of 18)	4955.0	NR_102380	11491.0	Mm.27681	NM_009615	ENSMUSG00000052593	Adam17	CD156b|Tace	a disintegrin and metallopeptidase domain 17	protein-coding	3.50725392223685	3.28534114251206	3.34015949237211	2.23130928832769	2.12623886229931	3.47935902312443	2.12228932684769	3.47258215973059	-0.343317206929047	0.639768107652286	0.982599433509505
Merged-chr15-27325992-3	chr15	27325881	27326081	+	735.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-140696.0	NM_020332	11732.0	Mm.265264	NM_020332	ENSMUSG00000022265	Ank	Ankh|D15Ertd221e|ank|mKIAA1581	progressive ankylosis	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98960521-4	chr11	98960384	98960584	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001176528)	promoter-TSS (NM_001176528)	13.0	NM_001176528	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-109346414-2	chr11	109346305	109346505	+	733.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027883)	promoter-TSS (NR_027883)	-462.0	NR_027883	67927.0	Mm.394490	NR_027883	ENSMUSG00000099630	1700096J18Rik	-	RIKEN cDNA 1700096J18 gene	ncRNA	1.44692530791092	1.13360098866758	2.80457177161031	1.83945336227724	1.61680685493518	1.98406326273198	2.4632733546665	1.33202177318086	-0.166166205477418	0.87870890678614	0.998431161219273
Merged-chr9-111608911-4	chr9	111608797	111608997	+	817.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001324546, intron 1 of 9)	intron (NM_001324546, intron 1 of 9)	81451.0	NM_016853	20840.0	Mm.1414	NM_016853	ENSMUSG00000032502	Stac	-	src homology three (SH3) and cysteine rich domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-38188008-2	chr7	38187889	38188089	+	640.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_028166, intron 1 of 3)	intron (NM_028166, intron 1 of 3)	4202.0	NM_028166	72244.0	Mm.187554	NM_028166		1600014C10Rik	AI428873	RIKEN cDNA 1600014C10 gene	protein-coding	-0.75479219083388	-0.738718537573673	0.293532667902482	-0.747856309639296	-0.753741706079616	-0.737590934911541	-0.742677292790408	-0.747143114681175	-4.19837354306982	0.0990940479759321	1
Merged-chr16-57398799-3	chr16	57398688	57398888	+	834.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	45511.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-95741534-3	chr12	95741414	95741614	+	791.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201518, intron 1 of 1)	intron (NM_201518, intron 1 of 1)	49288.0	NM_201518	399558.0	Mm.341948	NM_201518	ENSMUSG00000047414	Flrt2	-	fibronectin leucine rich transmembrane protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-31803628-3	chr11	31803511	31803711	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_102312, intron 1 of 4)	intron (NR_102312, intron 1 of 4)	20936.0	NR_102310	414116.0	Mm.150222	NR_102310	ENSMUSG00000085772	D630024D03Rik	-	RIKEN cDNA D630024D03 gene	ncRNA	0.777462995996143	1.62632602898628	0.473013930562179	0.665841568925277	0.785943418090647	1.34268148285156	0.475627992737408	0.46540512128961	-0.647025283092636	0.689666558757753	0.996533206832645
Merged-chr13-113611066-2	chr13	113610972	113611172	+	905.0	f0_balb.idr|f0_c57.idr	intron (NM_130796, intron 1 of 1)	intron (NM_130796, intron 1 of 1)	7492.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-74390137-2	chr13	74390037	74390237	+	577.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13571.0	NM_001081680	238722.0	Mm.461254	NM_001081680	ENSMUSG00000069184	Zfp72	Zfp74	zinc finger protein 72	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-76448010-2	chr11	76447910	76448110	+	551.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346670, intron 15 of 21)	intron (NM_001346670, intron 15 of 21)	20455.0	NM_001291186	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-78301512-4	chr11	78301407	78301607	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017407)	promoter-TSS (NM_017407)	-84.0	NM_017407	54141.0	Mm.24250	NM_017407	ENSMUSG00000002055	Spag5	AI874642|D11Bhm180e|Deepest|MAP126|Mastrin|S17	sperm associated antigen 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-160732126-1	chr2	160732026	160732226	+	607.0	f0_c57.idr	intron (NM_021280, intron 2 of 33)	CpG-8784	816.0	NM_021280	18803.0	Mm.44463	NM_021280	ENSMUSG00000016933	Plcg1	AI894140|Cded|Plc-1|Plc-gamma1|Plcg-1	phospholipase C, gamma 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135152979-2	chr4	135152879	135153079	+	790.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_019732, exon 2 of 6)	exon (NM_019732, exon 2 of 6)	32334.0	NM_019732	12399.0	Mm.378894	NM_019732	ENSMUSG00000070691	Runx3	AML2|Cbfa3|Pebp2a3	runt related transcription factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-74989479-4	chr15	74989391	74989591	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6061.0	NM_020498	57248.0	Mm.358339	NM_020498	ENSMUSG00000022586	Ly6i	AI789751|Ly-6I|Ly-6M	lymphocyte antigen 6 complex, locus I	protein-coding	1.90524393655015	3.13061329513372	1.88422662401132	1.83299285460275	2.30591077939484	2.99572886505095	2.717193928197	2.30488712929949	0.594526274708887	0.484049604219914	0.931207887927275
Merged-chr4-132621847-3	chr4	132621681	132621881	+	729.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR11D|LTR|ERVK	-17265.0	NM_210071	14050.0	Mm.227733	NM_010166	ENSMUSG00000028886	Eya3	AI844637	EYA transcriptional coactivator and phosphatase 3	protein-coding	2.31677906312239	2.36648201235978	2.40453943234796	1.95612278145265	2.583978122806	2.80788949894764	1.64757127293828	1.96559285599481	0.163298460939754	0.851090959128175	0.998431161219273
Merged-chr6-28899043-3	chr6	28898993	28899193	+	889.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-67346.0	NM_138682	192198.0	Mm.443660	NM_138682	ENSMUSG00000049939	Lrrc4	MBAG1|NGL-2|NGL2|NLG-2|Nag14	leucine rich repeat containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-119401337-4	chr9	119401159	119401359	+	917.1083369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001313757)	promoter-TSS (NM_001313757)	-919.0	NM_007397	11481.0	Mm.8940	NM_007397	ENSMUSG00000061393	Acvr2b	4930516B21Rik|ActRIIB	activin receptor IIB	protein-coding	1.94958748601066	1.90413048455219	1.01709494549982	1.38625985569471	1.69882891719492	2.03270726381361	1.59216612888756	1.00471799338605	0.0298981296708936	0.980299336073058	0.998431161219273
Merged-chr9-116151506-1	chr9	116151406	116151606	+	757.5	f0_balb.idr	intron (NM_029575, intron 1 of 6)	intron (NM_029575, intron 1 of 6)	23857.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	1.14195815384468	0.534084078481418	0.523338887303384	0.864349767161779	0.944613862839388	0.536486092925308	0.73304285915135	1.64763545026845	1.13531878136378	0.479289547956658	0.928092227925527
Merged-chr8-105563554-2	chr8	105563454	105563654	+	737.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013477, intron 1 of 7)	MIRb|SINE|MIR	2510.0	NM_013477	11972.0	Mm.17708	NM_013477	ENSMUSG00000013160	Atp6v0d1	AI267038|Ac39|Atp6d|P39|VATX|Vma6	ATPase, H+ transporting, lysosomal V0 subunit D1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-9936125-2	chr19	9936025	9936225	+	612.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36592.0	NM_016692	16319.0	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117813610-2	chr11	117813510	117813710	+	591.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009304, exon 4 of 4)	3' UTR (NM_009304, exon 4 of 4)	3943.0	NM_009304	20973.0	Mm.468228	NM_009304	ENSMUSG00000048277	Syngr2	Clast2|cellugyrin	synaptogyrin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-36641202-4	chr16	36641110	36641310	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019388, intron 1 of 7)	intron (NM_019388, intron 1 of 7)	24867.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70754597-4	chr8	70754493	70754693	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009001)	promoter-TSS (NM_009001)	-86.0	NM_001328047	19339.0	Mm.5083	NM_009001	ENSMUSG00000031840	Rab3a	-	RAB3A, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-91165207-3	chr15	91165113	91165313	+	793.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011994, intron 6 of 9)	MER20|DNA|hAT-Charlie	26794.0	NM_011994	26874.0	Mm.295456	NM_011994	ENSMUSG00000055782	Abcd2	ABC39|ALDL1|ALDR|ALDRP	ATP-binding cassette, sub-family D (ALD), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83793356-2	chr6	83793256	83793456	+	621.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_136916)	TTS (NR_136916)	914.0	NR_136916	665004.0		NR_136916		Gm7443	EG665004	ribosomal protein L27 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133615687-3	chr4	133615580	133615780	+	921.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001017968, intron 2 of 7)	intron (NM_001017968, intron 2 of 7)	-13512.0	NM_018754	55948.0	Mm.44482	NM_018754	ENSMUSG00000047281	Sfn	Er|Mme1|Ywhas	stratifin	protein-coding	3.49422188688016	3.05190067440373	3.20762840219158	3.43213708299507	5.38829843445585	4.80251597931961	4.31159274077934	5.10681950351291	2.17832934202115	1.06234855808734e-06	6.80394555156505e-05
Merged-chr9-75521965-1	chr9	75521865	75522065	+	582.0	f1_c57bl6.idr	intron (NM_001357828, intron 3 of 10)	B3|SINE|B2	37692.0	NM_016963	50875.0	Mm.38445	NM_016963	ENSMUSG00000058587	Tmod3	U-Tmod|UTMOD	tropomodulin 3	protein-coding	2.21658345307841	2.1419498220805	1.37273459879766	1.79169660772737	1.7170265964991	1.77724220497056	1.38077466976122	1.67098716413503	-0.869953024498308	0.40045700239505	0.885232511369712
Merged-chr4-7154062-2	chr4	7153962	7154162	+	783.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-163339.0	NM_145711	252838.0	Mm.435828	NM_145711	ENSMUSG00000041272	Tox	1700007F02Rik	thymocyte selection-associated high mobility group box	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-54655046-2	chr14	54654946	54655146	+	776.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_038053)	TTS (NR_038053)	-1345.0	NM_001085472	56215.0	Mm.297078	NM_019567	ENSMUSG00000022185	Acin1	2610036I19Rik|2610510L13Rik|Acinus|Acn|C79325|acinusL|acinusS|mKIAA0670	apoptotic chromatin condensation inducer 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115699463-4	chr11	115699367	115699567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001313937)	promoter-TSS (NM_001313937)	67.0	NM_001313937	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-83703493-4	chr17	83703374	83703574	+	990.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2689.0	NM_001171054	116871.0	Mm.277668	NM_054082	ENSMUSG00000055817	Mta3	1110002J22Rik|mKIAA1266	metastasis associated 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-57521078-4	chr6	57520976	57521176	+	912.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175523, intron 3 of 6)	intron (NM_175523, intron 3 of 6)	14350.0	NM_175523	243382.0	Mm.396893	NM_175523	ENSMUSG00000037826	Ppm1k	2900063A19Rik|A930026L03Rik|PP2Cm	protein phosphatase 1K (PP2C domain containing)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-68274546-1	chr10	68274446	68274646	+	588.0	f1_c57bl6.idr	intron (NM_023598, intron 2 of 9)	intron (NM_023598, intron 2 of 9)	4180.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	-0.738239219704272	-0.540231869872014	-0.859505656147742	-0.86125383061023	-0.863700619920552	-0.533883511500026	-0.859003375499952	-0.860949423383489	-0.496527998587029	0.864036321756663	1
Merged-chr3-65891289-3	chr3	65891181	65891381	+	832.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	66968.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	3.12155089513499	2.82815229255463	3.01652562459763	3.08596249736645	2.0446896133862	2.73211917244119	2.37499615034815	1.96880296120705	-1.43861995611887	0.048723634131632	0.321318887309264
Merged-chr11-33163170-4	chr11	33163022	33163222	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252261)	promoter-TSS (NM_001252261)	84.0	NM_001252261	18148.0	Mm.485384	NM_008722	ENSMUSG00000057113	Npm1	B23|NO38|Npm	nucleophosmin 1	protein-coding	4.25289565394664	4.48289175304836	4.48687848293156	3.8950181990209	3.59586841907201	4.025599934053	3.46552726720764	3.70356593319876	-0.812026563442344	0.0691645652284494	0.395034808129611
Merged-chr1-150993342-2	chr1	150993242	150993442	+	615.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024720)	promoter-TSS (NM_001024720)	93.0	NM_001024720	545370.0	Mm.379425	NM_001024720	ENSMUSG00000066842	Hmcn1	EG545370|FIBL-6|Gm201	hemicentin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-143834204-3	chr2	143834120	143834320	+	717.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291061, intron 5 of 7)	intron (NM_001291061, intron 5 of 7)	28953.0	NM_009751	12075.0	Mm.275937	NM_009751	ENSMUSG00000027420	Bfsp1	CP95	beaded filament structural protein 1, in lens-CP94	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-23830479-4	chr11	23830385	23830585	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-59515.0	NM_009044	19696.0	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-47057392-4	chr4	47057297	47057497	+	959.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356426)	promoter-TSS (NM_001356426)	-91.0	NM_001356426	75691.0	Mm.86866	NM_001024136	ENSMUSG00000066191	Anks6	2210417J20Rik|Ankrd14|Gm635|SamCystin|Samd6|b2b1801.1Clo	ankyrin repeat and sterile alpha motif domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-96946719-2	chr7	96946620	96946820	+	678.333374	f0_balb.idr|f1_balb.idr	Intergenic	RLTR45|LTR|ERVK	-4807.0	NM_153591	244141.0	Mm.274864	NM_153591	ENSMUSG00000018995	Nars2	AI875199	asparaginyl-tRNA synthetase 2 (mitochondrial)(putative)	protein-coding	1.26504200841516	0.700429983999905	0.684513895921848	1.97923366943537	1.27813140493713	0.703961023955796	0.688060646760535	1.76646032715583	-0.30115260053553	0.846288687149914	0.998431161219273
Merged-chr3-59212558-4	chr3	59212503	59212703	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177855, intron 15 of 43)	intron (NM_177855, intron 15 of 43)	-1721.0	NM_028808	74191.0	Mm.90067	NM_028808	ENSMUSG00000036362	P2ry13	2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174	purinergic receptor P2Y, G-protein coupled 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-140975646-4	chr4	140975556	140975756	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355515, intron 5 of 7)	intron (NM_001355515, intron 5 of 7)	-11217.0	NM_029097	74772.0	Mm.205625	NM_029097	ENSMUSG00000036622	Atp13a2	1110012E06Rik|AA589443	ATPase type 13A2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-129033621-4	chr6	129033520	129033720	+	720.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12281.0	NR_024263	232408.0	Mm.259262	NM_153094	ENSMUSG00000030154	Klrb1f	A630024B12Rik|Nkr-p1f|Nkrp1-f|Nkrp1f	killer cell lectin-like receptor subfamily B member 1F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-12460632-4	chr13	12460555	12460755	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291057, intron 1 of 8)	intron (NM_001291057, intron 1 of 8)	1083.0	NM_001291060	56048.0	Mm.474138	NM_018886	ENSMUSG00000057554	Lgals8	1200015E08Rik|AI326142|D13Ertd524e|Lgals-8	lectin, galactose binding, soluble 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-84557776-4	chr15	84557664	84557864	+	991.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177630)	promoter-TSS (NM_177630)	59.0	NM_177630	223732.0	Mm.6471	NM_177630	ENSMUSG00000055745	Rtl6	BC058638|Ldoc1l|Mar6|Mart6	retrotransposon Gag like 6	protein-coding	2.2644475399594	2.91472011126398	1.14666967269696	1.11842968440517	1.3200726305307	2.85984917399013	2.27881673003729	1.94166837513097	0.253361759245611	0.819015551559437	0.998431161219273
Merged-chr5-5420868-2	chr5	5420768	5420968	+	592.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-40617.0	NM_011074	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-65519863-3	chr7	65519779	65519979	+	828.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62152.0	NR_131060	407810.0	Mm.249337	NR_131060	ENSMUSG00000086662	BC046251	-	cDNA sequence BC046251	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-87890079-4	chr10	87889955	87890155	+	817.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111274, intron 2 of 4)	intron (NM_001111274, intron 2 of 4)	28944.0	NM_001111276	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-12904395-2	chr13	12904295	12904495	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	100935.0	NM_031191	18811.0	Mm.88796	NM_031191	ENSMUSG00000079092	Prl2c2	Ghd2|MRP-1|PLF-1|Plf|Plf1	prolactin family 2, subfamily c, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-82779070-4	chr11	82778981	82779181	+	860.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_126067)	TTS (NR_126067)	1961.0	NR_126068	100503272.0	Mm.486964	NR_126067	ENSMUSG00000085175	Gm11423	-	predicted gene 11423	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-45960180-2	chr11	45960077	45960277	+	677.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	-4674.0	NM_001080969	66628.0	Mm.269083	NM_001080969	ENSMUSG00000011254	Thg1l	-	tRNA-histidine guanylyltransferase 1-like (S. cerevisiae)	protein-coding	2.15242097813008	2.87996360305887	1.76810539518626	2.5506469439549	2.06296772715874	1.83780609779692	1.57569613098491	2.2807394878133	-1.05539460608197	0.245040775064844	0.744052442861818
Merged-chr12-17551473-3	chr12	17551411	17551611	+	813.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_013614)	TTS (NM_013614)	6638.0	NM_013614	18263.0	Mm.34102	NM_013614	ENSMUSG00000011179	Odc1	ODC	ornithine decarboxylase, structural 1	protein-coding	-0.437024327043903	-0.778225747096015	-0.780938595648234	-0.6298023841341	-0.429175127558738	-0.777161745436659	-0.78034169315615	-0.782657249337519	-0.421535436999113	0.882269584849466	1
Merged-chr3-65975537-4	chr3	65975434	65975634	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17285.0	NM_001355432	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-36071602-4	chr16	36071493	36071693	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027342)	promoter-TSS (NM_027342)	-67.0	NM_198645	381045.0	Mm.310434	NM_198645	ENSMUSG00000075229	Ccdc58	A930007B11Rik|AI413631	coiled-coil domain containing 58	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-8635613-4	chr15	8635529	8635729	+	993.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_148938, exon 10 of 10)	3' UTR (NM_148938, exon 10 of 10)	75178.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3664659-1	chr4	3664559	3664759	+	655.0	f0_balb.idr	Intergenic	Intergenic	8153.0	NR_040643	70143.0	Mm.417835	NR_040643	ENSMUSG00000085394	2210414B05Rik	-	RIKEN cDNA 2210414B05 gene	ncRNA	-0.856514354776245	-0.845370394978735	-0.850514310852045	-0.852773909475587	-0.292223953931639	-0.84264962171977	-0.849867491140278	-0.547401415615712	3.06460262907648	0.306617968354668	1
Merged-chr13-98896919-4	chr13	98896803	98897003	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178716, intron 1 of 23)	intron (NM_178716, intron 1 of 23)	-5861.0	NM_001048267	238799.0	Mm.173286	NM_178716	ENSMUSG00000009470	Tnpo1	AU021749|D13Ertd688e|IPO2|Kpnb2|MIP|MIP1|TRN	transportin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-55824973-2	chr4	55824873	55825073	+	575.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-292498.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-63029281-2	chr11	63029181	63029381	+	720.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25147.0	NR_126547	74884.0	Mm.363520	NR_126547	ENSMUSG00000087604	Cdrt4os1	4930452L02Rik	CMT1A duplicated region transcript 4, opposite strand 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-109703185-2	chr7	109703085	109703285	+	960.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020616)	promoter-TSS (NM_020616)	-552.0	NM_020616	57373.0	Mm.334138	NM_020616	ENSMUSG00000031023	Akip1	BCA3|C11orf17|D7H11orf17|D930014E17Rik|ICRFP703B1614Q5.6|ORF27	A kinase (PRKA) interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123257266-4	chr5	123257168	123257368	+	959.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29078.0	NM_026000	67151.0	Mm.278997	NM_026000	ENSMUSG00000029440	Psmd9	1500011J20Rik|2610202L11Rik|Bridge-1|P27	proteasome (prosome, macropain) 26S subunit, non-ATPase, 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-66139452-2	chr5	66139352	66139552	+	928.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001127382, intron 2 of 7)	intron (NM_001127382, intron 2 of 7)	11526.0	NM_001291226	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	0.599848818927379	0.206280921023225	0.198374198199542	0.192223593633438	1.12501245363445	0.208053426034323	0.944210962166588	0.193301353714976	2.34117282660147	0.257320119131613	1
Merged-chr8-80948602-4	chr8	80948488	80948688	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	66318.0	NM_027554	74841.0	Mm.246018	NM_027554	ENSMUSG00000038250	Usp38	4631402N15Rik|4833420O05Rik|AA536967|AU044701|AW544820|mKIAA1891	ubiquitin specific peptidase 38	protein-coding	5.26481376874345	5.79754755446537	5.32262179793025	5.47805112805668	5.39904671553835	5.58019319324098	5.32629309334941	5.90169162254283	0.108367130169014	0.696712491249682	0.997929106458421
Merged-chr17-84185141-3	chr17	84185085	84185285	+	760.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001001806, exon 2 of 2)	3' UTR (NM_001001806, exon 2 of 2)	2762.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-90861716-3	chr8	90861607	90861807	+	732.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177224, intron 2 of 39)	intron (NM_177224, intron 2 of 39)	32872.0	NM_177224	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	1.02178058561049	1.47507696431208	0.705602189320104	0.693205980256218	1.29213170584495	0.724789895268866	2.07985562630877	1.24109014884775	1.54771343052783	0.282851852677704	0.785689889279309
Merged-chr7-25758644-2	chr7	25758544	25758744	+	657.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001190974, exon 19 of 19)	3' UTR (NM_001190974, exon 19 of 19)	-3885.0	NM_178089	232989.0	Mm.254223	NM_144922	ENSMUSG00000040725	Hnrnpul1	E130317O14Rik|E1B-AP5|E1BAP5|Hnrnpul|Hnrpul1	heterogeneous nuclear ribonucleoprotein U-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-38239945-4	chr16	38239840	38240040	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347232, intron 11 of 11)	intron (NM_001347232, intron 11 of 11)	54884.0	NM_010936	18171.0	Mm.8509	NM_010936	ENSMUSG00000022809	Nr1i2	PXR|PXR.1|PXR.2|PXR1|SXR|mPXR	nuclear receptor subfamily 1, group I, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-52120580-2	chr1	52120480	52120680	+	924.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205314, intron 2 of 24)	intron (NM_001205314, intron 2 of 24)	958.0	NM_001205313	20846.0	Mm.277406	NM_009283	ENSMUSG00000026104	Stat1	2010005J02Rik|AA408197	signal transducer and activator of transcription 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-65106113-3	chr15	65106029	65106229	+	685.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-183833.0	NM_009623	11514.0	Mm.1425	NM_009623	ENSMUSG00000022376	Adcy8	AC8|AW060868	adenylate cyclase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-131858511-2	chr4	131858411	131858611	+	763.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025297, intron 4 of 9)	MIR3|SINE|MIR	15040.0	NM_025297	26922.0	Mm.192706	NM_025297	ENSMUSG00000028910	Mecr	AI195831|NRBF-1|Nrbf1	mitochondrial trans-2-enoyl-CoA reductase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-57220884-2	chr16	57220784	57220984	+	648.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_026254, intron 1 of 17)	intron (NM_026254, intron 1 of 17)	10582.0	NM_026254	67581.0	Mm.257819	NM_026254	ENSMUSG00000022749	Tbc1d23	4930451A13Rik|AU015720|AU043671|AU043778|D030022P07Rik|W51689	TBC1 domain family, member 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167745096-2	chr2	167745015	167745215	+	595.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53938.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166444569-2	chr2	166444469	166444669	+	807.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-2882.0	NR_015558	319684.0	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-62464499-4	chr7	62464398	62464598	+	900.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013788)	promoter-TSS (NM_013788)	12.0	NM_013788	27412.0	Mm.422745	NM_013788	ENSMUSG00000070526	Peg12	Frat3	paternally expressed 12	protein-coding	2.72774863095391	2.65860113781032	3.49187332197849	3.59175786015613	3.11129857125571	3.38970392616228	3.09075696084868	3.09285389243895	-0.0293800187724974	0.962006890294196	0.998431161219273
Merged-chr17-56159488-2	chr17	56159388	56159588	+	656.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3003.0	NM_025566	66443.0	Mm.2312	NM_025566	ENSMUSG00000044469	Tnfaip8l1	2600017J23Rik|TIPE1	tumor necrosis factor, alpha-induced protein 8-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-58687950-4	chr15	58687866	58688066	+	991.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	135461.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100960847-4	chr7	100960665	100960865	+	925.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183168, intron 1 of 2)	intron (NM_183168, intron 1 of 2)	3601.0	NM_183168	233571.0	Mm.235193	NM_183168	ENSMUSG00000048779	P2ry6	2010204J23Rik|P2Y6	pyrimidinergic receptor P2Y, G-protein coupled, 6	protein-coding	-0.60240342871213	0.289402245890995	-0.593343816410956	-0.596738528864229	-0.303010667934267	-0.587978765990389	-0.592375775794911	-0.596144530681578	-1.91575547357963	0.49054351645597	1
Merged-chr19-32292139-3	chr19	32292014	32292214	+	857.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 2 of 9)	intron (NM_144792, intron 2 of 9)	57202.0	NM_001168525	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-51815456-3	chr11	51815377	51815577	+	621.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_199299, exon 12 of 12)	3' UTR (NM_199299, exon 12 of 12)	42004.0	NM_199299	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-100599021-4	chr15	100598913	100599113	+	912.712524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304965, intron 1 of 10)	intron (NM_001304965, intron 1 of 10)	971.0	NM_001304965	19009.0	Mm.28825	NM_010127	ENSMUSG00000009739	Pou6f1	2310038G18Rik|C79593|Emb|cns-1	POU domain, class 6, transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72102171-2	chr6	72102071	72102271	+	610.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011375, intron 1 of 6)	intron (NM_011375, intron 1 of 6)	4563.0	NM_011375	20454.0	Mm.38248	NM_011375	ENSMUSG00000056091	St3gal5	3S-T|Siat9|[a]2	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-106330366-4	chr9	106330265	106330465	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027354, intron 10 of 10)	MTC|LTR|ERVL-MaLR	-38267.0	NM_153459	235584.0	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	3.96258748918673	4.4303836064436	4.75533087144938	3.92770067475107	3.45866639219358	4.85182830064831	5.21833570217542	2.53146866436145	0.10560110912647	0.852416626377847	0.998431161219273
Merged-chr13-10686525-1	chr13	10686425	10686625	+	731.0	f0_c57.idr	Intergenic	RMER16|LTR|ERVK	-325722.0	NM_033269	12671.0	Mm.342315	NM_033269	ENSMUSG00000046159	Chrm3	Chrm-3|M3|M3R	cholinergic receptor, muscarinic 3, cardiac	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-130708150-1	chr3	130708050	130708250	+	540.0	f1_balb.idr	intron (NM_025509, intron 1 of 3)	intron (NM_025509, intron 1 of 3)	1294.0	NM_025509	66357.0	Mm.300697	NM_025509	ENSMUSG00000041084	Ostc	2310008M10Rik|5730557H03Rik	oligosaccharyltransferase complex subunit (non-catalytic)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-113663666-4	chr9	113663556	113663756	+	908.56665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164678, intron 12 of 17)	B4A|SINE|B4	44603.0	NM_001164678	18571.0	Mm.29816	NM_011052	ENSMUSG00000032504	Pdcd6ip	AI480591|AW544830|Aip1|Alix|C76364|Eig2|mKIAA1375	programmed cell death 6 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-76496076-2	chr11	76495976	76496176	+	732.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198018, intron 1 of 21)	B3A|SINE|B2	-1581.0	NM_001346670	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	1.61252275444901	2.54347151797049	1.11672896505293	1.84893529508933	1.06064249589171	2.64915837397741	1.92242277931276	1.9883406818612	0.340256473231392	0.761782311607778	0.998431161219273
Merged-chr8-40133022-3	chr8	40132945	40133145	+	709.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	153908.0	NM_030610	80857.0	Mm.425526	NM_030610	ENSMUSG00000031603	Fgf20	-	fibroblast growth factor 20	protein-coding	2.10031586668894	3.31447119781773	2.67956881453228	2.70419656268736	2.25369598367711	1.48501009039453	3.48137256643618	2.23330699172565	-0.336187156916087	0.695581825282087	0.997923870727665
Merged-chr13-12873077-2	chr13	12872977	12873177	+	760.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72998.0	NM_011118	18812.0	Mm.457984	NM_011118	ENSMUSG00000056457	Prl2c3	Ghd1|MRP-2|MRP-3|Mrpplf3|PLF-2|PLF-3|Plf2|Prl2c4|mrp/plf3	prolactin family 2, subfamily c, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-61157692-4	chr15	61157582	61157782	+	801.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-236412.0	NM_001081067	117586.0	Mm.291499	NM_001081067	ENSMUSG00000022347	A1bg	C44	alpha-1-B glycoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114934429-4	chr11	114934326	114934526	+	922.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199221)	promoter-TSS (NM_199221)	-40.0	NM_199221	217304.0	Mm.185355	NM_199221	ENSMUSG00000063193	Cd300lb	CLM-7|Clm7|Gm253|LMIR5	CD300 molecule like family member B	protein-coding	1.75466049206831	1.05751098942705	2.53203097424366	1.85821545254869	1.77054104467432	1.06260611549743	1.03963195624095	2.25656498071126	-0.714405115568178	0.5637149048791	0.960367595640396
Merged-chr11-6497400-1	chr11	6497300	6497500	+	791.0	f1_c57bl6.idr	Intergenic	Intergenic	-21324.0	NM_011221	19291.0	Mm.296150	NM_011221	ENSMUSG00000094483	Purb	2310015K15Rik|AA114818|Cager-2|D11Bwg0414e	purine rich element binding protein B	protein-coding	1.97944403056159	0.711655529545555	2.70908312876902	1.14537001835665	0.637421510589254	0.717077443900206	1.55236731399093	0.670522281351188	-2.76974428180761	0.0549603193347971	0.344761543070179
Merged-chr7-129772033-3	chr7	129771919	129772119	+	857.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	180156.0	NM_172255	207425.0	Mm.229323	NM_172255	ENSMUSG00000042055	Wdr11	2900055P10Rik|AW489876|Brwd2|mKIAA1351	WD repeat domain 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-15289124-4	chr4	15289025	15289225	+	820.391663	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23305.0	NM_181401	100201.0	Mm.394111	NM_181401	ENSMUSG00000043252	Tmem64	9630015D15Rik|AI790744|AV300874	transmembrane protein 64	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-20293990-1	chr16	20293890	20294090	+	961.0	f0_balb.idr	intron (NM_001005767, intron 3 of 9)	intron (NM_001005767, intron 3 of 9)	8372.0	NM_001005767	381038.0	Mm.371737	NM_001005767	ENSMUSG00000033918	Parl	D16Ertd607e|PRO2207|PSARL1|PSENIP2|Psarl	presenilin associated, rhomboid-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117710198-4	chr10	117710101	117710301	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010786, intron 1 of 11)	CpG-1528	557.0	NM_010786	17246.0	Mm.22670	NM_010786	ENSMUSG00000020184	Mdm2	1700007J15Rik|AA415488|Mdm-2	transformed mouse 3T3 cell double minute 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116839758-2	chr11	116839658	116839858	+	635.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_033398, intron 4 of 5)	intron (NM_033398, intron 4 of 5)	3691.0	NM_033398	107817.0	Mm.481684	NM_033398	ENSMUSG00000056962	Jmjd6	5730436I23Rik|D11Ertd195e|PSR|PtdSerR|Ptdsr|mKIAA0585	jumonji domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127355975-3	chr7	127355868	127356068	+	596.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MYSERV6-int|LTR|ERVK	-10654.0	NM_146202	233890.0	Mm.23031	NM_146202	ENSMUSG00000047371	Zfp768	BC026432|Znf768	zinc finger protein 768	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-145215125-2	chr4	145215025	145215225	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011610, exon 10 of 10)	3' UTR (NM_011610, exon 10 of 10)	-20120.0	NM_001276465	230895.0	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-117191397-3	chr4	117191282	117191482	+	595.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8758.0	NM_134471	73804.0	Mm.247651	NM_134471	ENSMUSG00000028678	Kif2c	4930402F02Rik|ESTM5|Knsl6|MCAK|X83316	kinesin family member 2C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-44072675-4	chr4	44072562	44072762	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001190414)	promoter-TSS (NM_001190414)	55.0	NM_001357539	50798.0	Mm.256718	NM_015828	ENSMUSG00000028479	Gne	2310066H07Rik|DMRV|GLCNE|IBM2|NM|Uae1	glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-106810243-3	chr7	106810140	106810340	+	658.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3780.0	NM_146600	258593.0	Mm.377583	NM_146600	ENSMUSG00000094493	Olfr700	MOR283-4	olfactory receptor 700	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-73681389-4	chr12	73681278	73681478	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008856, intron 2 of 13)	intron (NM_008856, intron 2 of 13)	96582.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19338231-4	chr7	19338117	19338317	+	998.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6854.0	NM_001127324	13870.0	Mm.280913	NM_007948	ENSMUSG00000003549	Ercc1	Ercc-1	excision repair cross-complementing rodent repair deficiency, complementation group 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-63720851-2	chr9	63720751	63720951	+	543.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016769, intron 1 of 8)	intron (NM_016769, intron 1 of 8)	37143.0	NM_016769	17127.0	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180303816-4	chr1	180303701	180303901	+	941.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26675.0	NM_001081175	320404.0	Mm.132535	NM_001081175	ENSMUSG00000038855	Itpkb	1110033J02Rik|E130307H12Rik	inositol 1,4,5-trisphosphate 3-kinase B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128336568-2	chr10	128336468	128336668	+	700.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1159.0	NM_026444	12974.0	Mm.58836	NM_026444	ENSMUSG00000005683	Cs	2610511A05Rik|9030605P22Rik|Ahl4|BB234005|Cis	citrate synthase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-152848639-2	chr2	152848539	152848739	+	567.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028109, intron 1 of 17)	intron (NM_028109, intron 1 of 17)	675.0	NM_028109	72119.0	Mm.407737	NM_028109	ENSMUSG00000027469	Tpx2	2610005B21Rik|DIL2|REPP86|p100	TPX2, microtubule-associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19458860-4	chr7	19458758	19458958	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172279)	promoter-TSS (NM_172279)	-364.0	NM_172279	232944.0	Mm.260504	NM_172279	ENSMUSG00000030397	Mark4	2410090P21Rik|C79806|Markl1	MAP/microtubule affinity regulating kinase 4	protein-coding	1.29133649767282	1.01789262612556	1.41131218114788	1.36718201995574	1.5663602652977	0.811107377977545	0.799389670189575	1.25838827254486	-0.480768661744638	0.72686889829441	0.998431161219273
Merged-chr8-70572677-2	chr8	70572578	70572778	+	645.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007924, intron 1 of 11)	intron (NM_007924, intron 1 of 11)	-21803.0	NM_023627	71780.0	Mm.29357	NM_023627	ENSMUSG00000019139	Isyna1	1300017C10Rik|AU018670	myo-inositol 1-phosphate synthase A1	protein-coding	-0.169280339043508	-0.287443291382167	-0.129962751172364	-0.293813344960834	-0.165617212666204	0.0442261880848786	0.134301157576017	-0.293331426392571	1.7497131162416	0.433610988694568	1
Merged-chr13-46168926-4	chr13	46168826	46169026	+	870.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-104795.0	NM_001005422	380842.0	Mm.188108	NM_001005422	ENSMUSG00000063529	Stmnd1	Gm1574	stathmin domain containing 1	protein-coding	1.49890423989447	0.733966328823004	1.23047263017435	1.19144093098086	1.24440749325074	1.54181068148863	0.724681558194807	0.714353782877773	-0.333508606989104	0.822769439646082	0.998431161219273
Merged-chr15-84256472-4	chr15	84256389	84256589	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133167, intron 1 of 12)	intron (NM_133167, intron 1 of 12)	24446.0	NM_133167	170736.0	Mm.323892	NM_133167	ENSMUSG00000022438	Parvb	AI595373|AW742462|D15Gsk1|affixin	parvin, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-43349683-4	chr11	43349568	43349768	+	947.866699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	24793.0	NR_029558	387164.0		NR_029558	ENSMUSG00000065601	Mir146	Mirn146|miR-146a|mmu-mir-146	microRNA 146	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-75791334-3	chr15	75791228	75791428	+	852.577759	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172121, intron 4 of 11)	intron (NM_172121, intron 4 of 11)	-43406.0	NM_194350	378435.0	Mm.309589	NM_194350	ENSMUSG00000047591	Mafa	RIPE3b1	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein A (avian)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-116933417-2	chr2	116933317	116933517	+	585.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA4|LINE|L1	33265.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-117313602-4	chr5	117313506	117313706	+	766.974976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5660.0	NM_001033311	231668.0	Mm.298603	NM_001033311	ENSMUSG00000066894	Vsig10	-	V-set and immunoglobulin domain containing 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-100937622-4	chr14	100937507	100937707	+	869.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	262462.0	NM_029680	76627.0	Mm.31415	NM_029680	ENSMUSG00000042888	Prr30	1700110M21Rik	proline rich 30	protein-coding	0.953971959322345	0.614584919012586	0.86375614699275	0.414282895332437	0.672626655436635	0.916500014562652	0.59699191890573	0.415212216083273	-0.412984012011597	0.802223973918567	1
Merged-chr13-21752586-2	chr13	21752486	21752686	+	570.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_178183)	TTS (NM_178183)	1326.0	NM_178183	319169.0	Mm.370338	NM_178183	ENSMUSG00000063021	Hist1h2ak	-	histone cluster 1, H2ak	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-12394448-2	chr13	12394348	12394548	+	838.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144835)	promoter-TSS (NM_144835)	-927.0	NM_144835	217995.0	Mm.171186	NM_144835	ENSMUSG00000050244	Heatr1	AA517551|B130016L12Rik|BC019693	HEAT repeat containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105297669-4	chr8	105297623	105297823	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_148952)	promoter-TSS (NM_148952)	60.0	NM_148952	104394.0	Mm.34554	NM_148952	ENSMUSG00000014859	E2f4	2010111M04Rik|AI427446	E2F transcription factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5629008-2	chr17	5628908	5629108	+	783.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	136408.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-77168980-3	chr1	77168865	77169065	+	628.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	327803.0	NR_105770	102465180.0		NR_105770	ENSMUSG00000099141	Mir6352	Gm27481|mmu-mir-6352	microRNA 6352	ncRNA	1.39730540097348	1.27886822059732	2.67517853596685	2.0291359281168	2.38641610964985	1.81961425884971	2.25462274799246	3.40807652692769	1.3581057906262	0.162752743460727	0.625066394379577
Merged-chr6-71200743-4	chr6	71200650	71200850	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017399, intron 1 of 3)	intron (NM_017399, intron 1 of 3)	871.0	NM_017399	14080.0	Mm.22126	NM_017399	ENSMUSG00000054422	Fabp1	Fabpl|L-FABP	fatty acid binding protein 1, liver	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131076228-1	chr1	131076128	131076328	+	567.0	f1_c57bl6.idr	intron (NM_008551, intron 1 of 9)	intron (NM_008551, intron 1 of 9)	21615.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-58304082-3	chr4	58303972	58304172	+	960.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037130, intron 5 of 12)	intron (NM_001037130, intron 5 of 12)	18110.0	NM_010944	18198.0	Mm.16148	NM_010944	ENSMUSG00000057280	Musk	Mdk4|Mlk|Nsk1|Nsk2|Nsk3	muscle, skeletal, receptor tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-36751206-2	chr5	36751106	36751306	+	809.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2527.0	NM_133724	117197.0	Mm.46744	NM_133724	ENSMUSG00000060708	Bloc1s4	2610101N07Rik|Blos4|Cno	biogenesis of lysosomal organelles complex-1, subunit 4, cappuccino	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-96591662-3	chr4	96591482	96591682	+	863.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028979)	promoter-TSS (NM_028979)	-97.0	NM_028979	74519.0	Mm.458387	NM_028979	ENSMUSG00000015224	Cyp2j9	8430417E17Rik	cytochrome P450, family 2, subfamily j, polypeptide 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-117962138-4	chr2	117962035	117962235	+	973.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_126479, intron 8 of 9)	intron (NR_126479, intron 8 of 9)	140207.0	NR_040631	73938.0	Mm.399107	NR_040631	ENSMUSG00000086221	4930412B13Rik	-	RIKEN cDNA 4930412B13 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36569558-4	chr1	36569487	36569687	+	892.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001126046, intron 12 of 14)	intron (NM_001126046, intron 12 of 14)	-11206.0	NM_001126047	20353.0	Mm.29558	NM_001126047	ENSMUSG00000026121	Sema4c	AI426163|M-Sema F|Semacl1|Semaf|Semai|sema I	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128334264-4	chr2	128334157	128334357	+	998.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028590, intron 1 of 2)	L1MB2|LINE|L1	95094.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	2.07150770887643	1.27786201804724	1.75620818756744	2.32504933628083	2.42391377055029	1.28711004719334	3.58129359955928	2.97404693198743	1.83538540464259	0.0588354569913574	0.358328349110683
Merged-chr4-114982757-4	chr4	114982654	114982854	+	712.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025647, intron 1 of 5)	B3|SINE|B2	4474.0	NM_025647	66588.0	Mm.294159	NM_025647	ENSMUSG00000028719	Cmpk1	0610011D08Rik|CK|Cmpk|UMP-CMPk	cytidine monophosphate (UMP-CMP) kinase 1	protein-coding	1.34168835535496	1.7396398378951	1.03463281792432	1.01204609145921	1.35347805603231	1.40145117741369	0.84016156364506	1.30839701743688	-0.303819366700032	0.813900684723856	0.998431161219273
Merged-chr15-66747595-2	chr15	66747495	66747695	+	673.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009375, intron 34 of 47)	intron (NM_009375, intron 34 of 47)	76825.0	NM_009375	21819.0	Mm.441333	NM_009375	ENSMUSG00000053469	Tg	Tgn|cog	thyroglobulin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-73144393-2	chr15	73144293	73144493	+	621.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153178, intron 2 of 18)	intron (NM_153178, intron 2 of 18)	40554.0	NM_153178	239528.0	Mm.23095	NM_153178	ENSMUSG00000036698	Ago2	1110029L17Rik|2310051F07Rik|AI225898|AL022874|AW546247|Eif2c2|Gerp95|Gm10365|mKIAA4215	argonaute RISC catalytic subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56615936-2	chr17	56615836	56616036	+	737.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_028782, exon 13 of 18)	exon (NM_028782, exon 13 of 18)	2541.0	NM_018730	54217.0	Mm.11376	NM_018730	ENSMUSG00000057863	Rpl36	-	ribosomal protein L36	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-95322365-4	chr10	95322268	95322468	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001330138, intron 2 of 2)	intron (NM_001330138, intron 2 of 2)	1341.0	NM_001330138	12905.0	Mm.473739	NM_009950	ENSMUSG00000045867	Cradd	RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-46773969-2	chr17	46773869	46774069	+	722.6999509999999	f1_balb.idr|f1_c57bl6.idr	TTS (NM_025966)	TTS (NM_025966)	1334.0	NM_025966	67101.0	Mm.358702	NM_025966	ENSMUSG00000062619	2310039H08Rik	-	RIKEN cDNA 2310039H08 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-98922947-2	chr13	98922847	98923047	+	790.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178716, intron 1 of 23)	ORR1A2-int|LTR|ERVL-MaLR	3437.0	NM_178716	238799.0	Mm.173286	NM_178716	ENSMUSG00000009470	Tnpo1	AU021749|D13Ertd688e|IPO2|Kpnb2|MIP|MIP1|TRN	transportin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-179398932-3	chr1	179398834	179399034	+	656.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027188, intron 5 of 11)	intron (NM_027188, intron 5 of 11)	119107.0	NM_027188	69726.0	Mm.222338	NM_027188	ENSMUSG00000055067	Smyd3	2410008A19Rik|Zmynd1	SET and MYND domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-52464612-1	chr18	52464512	52464712	+	583.5	f1_c57bl6.idr	Intergenic	Intergenic	-1081.0	NM_026040	67222.0	Mm.100617	NM_026040	ENSMUSG00000024528	Srfbp1	2810036K01Rik|p49/STRAP	serum response factor binding protein 1	protein-coding	1.65572857026757	2.97372185639063	2.55410040250823	1.09356921665663	1.29741594391779	2.349143384061	2.57593799395221	1.0986059484989	-0.617857679118016	0.581338113516249	0.966599221005409
Merged-chr19-21495955-2	chr19	21495858	21496058	+	892.25	f0_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23297.0	NM_010266	14544.0	Mm.45054	NM_010266	ENSMUSG00000058624	Gda	AU015411|AW047581|GAH	guanine deaminase	protein-coding	3.59937927954009	4.29722235688846	3.16714138571916	3.84640401092381	2.06563513051649	3.84705520445722	2.81242154691415	3.86526921405155	-0.66028514736159	0.293290384741464	0.797649214211793
Merged-chr15-95954763-2	chr15	95954663	95954863	+	607.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 15 of 19)	intron (NM_175344, intron 15 of 19)	-124691.0	NR_155276	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88237617-2	chr3	88237517	88237717	+	874.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17067.0	NM_021375	58176.0	Mm.103777	NM_021375	ENSMUSG00000104445	Rhbg	-	Rhesus blood group-associated B glycoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-45274950-2	chr2	45274850	45275050	+	760.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-157508.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-43770762-4	chr5	43770689	43770889	+	994.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001159963, exon 3 of 11)	exon (NM_001159963, exon 3 of 11)	11360.0	NM_001159963	242960.0	Mm.25794	NM_178729	ENSMUSG00000039753	Fbxl5	Fbl4|Fir4	F-box and leucine-rich repeat protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-3135057-2	chr11	3134963	3135163	+	993.333374	f0_balb.idr|f1_balb.idr	intron (NM_030207, intron 27 of 32)	intron (NM_030207, intron 27 of 32)	11042.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-31519637-1	chr10	31519537	31519737	+	739.0	f0_balb.idr	intron (NM_001146349, intron 2 of 5)	ORR1E|LTR|ERVL-MaLR	-73679.0	NM_001359366	21987.0	Mm.439966	NM_009413	ENSMUSG00000000296	Tpd52l1	D53	tumor protein D52-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126780134-4	chr7	126780074	126780274	+	999.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_026875, exon 5 of 5)	3' UTR (NM_026875, exon 5 of 5)	-1309.0	NM_011538	21389.0	Mm.727	NM_011538	ENSMUSG00000030699	Tbx6	rv	T-box 6	protein-coding	0.169292366101928	0.191867314403187	0.18452476850477	1.02895631086004	0.870078302312658	0.193515701989408	0.186148492640719	0.642751495624946	0.241604895782404	0.907718883258406	1
Merged-chr4-102329228-3	chr4	102329138	102329338	+	872.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177983, intron 1 of 5)	intron (NM_001177983, intron 1 of 5)	74299.0	NM_019840	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126873410-3	chr8	126873274	126873474	+	878.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	24354.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-48447440-2	chr15	48447340	48447540	+	806.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081391, intron 5 of 70)	Lx5c|LINE|L1	344549.0	NM_001081391	239420.0	Mm.309363	NM_001081391	ENSMUSG00000022311	Csmd3	4930500N14Rik|mKIAA1894	CUB and Sushi multiple domains 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70786724-2	chr11	70786624	70786824	+	902.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	22277.0	NM_177565	193043.0	Mm.40966	NM_177565	ENSMUSG00000043602	Zfp3	AI854635|B230309J24|Fnp-1|Zfp-3	zinc finger protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72936672-1	chr6	72936572	72936772	+	744.0	f1_balb.idr	Intergenic	Intergenic	21560.0	NM_001039392	19240.0	Mm.3532	NM_025284	ENSMUSG00000079523	Tmsb10	Ptmb10|Tb10	thymosin, beta 10	protein-coding	0.216715655280623	-0.0492651286011771	-0.0552558081081123	-0.0598967993210761	0.443887178846792	0.822539339135756	-0.0539321694205246	-0.0590848014256242	2.52471837990756	0.265786487098218	1
Merged-chr17-5609273-2	chr17	5609173	5609373	+	641.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	RMER17A|LTR|ERVK	116673.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-156209721-1	chr4	156209621	156209821	+	544.0	f1_c57bl6.idr	Intergenic	Intergenic	-6206.0	NM_172417	74183.0	Mm.431343	NM_172417	ENSMUSG00000078486	Perm1	2310042D19Rik	PPARGC1 and ESRR induced regulator, muscle 1	protein-coding	1.22994639918086	1.04026900457076	1.00733071952666	2.11848918561086	0.75176509000284	1.68574531121409	1.01467324420363	1.16211008743745	-0.863178882895133	0.511498467387523	0.94512318675548
Merged-chr2-159735368-2	chr2	159735200	159735400	+	736.416626	f0_c57.idr|f1_c57bl6.idr	Intergenic	L1MEg|LINE|L1	-212041.0	NR_040498	71081.0	Mm.383491	NR_040498	ENSMUSG00000085198	4933416E03Rik	-	RIKEN cDNA 4933416E03 gene	ncRNA	-0.394629803892764	-0.633016732007939	-0.330861235664131	-0.240503768601088	-0.641532513246517	-0.632339740870544	-0.635350679555065	-0.637905207188106	-3.14090920473604	0.237984562477136	1
Merged-chr9-111035486-2	chr9	111035389	111035589	+	822.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008522, intron 13 of 16)	HAL1|LINE|L1	16197.0	NM_008522	17002.0	Mm.282359	NM_008522	ENSMUSG00000032496	Ltf	Csp82|Lf|MMS10R|Ms10r	lactotransferrin	protein-coding	-0.319369944812944	-0.305956927737239	-0.310353412321302	0.112134069726117	-0.17186410624638	-0.304965586598742	-0.30938392458418	0.411616716044604	1.21327263274143	0.623016395143022	1
Merged-chr7-67546477-1	chr7	67546377	67546577	+	698.0	f0_balb.idr	intron (NR_028144, intron 5 of 8)	L1MC4a|LINE|L1	98759.0	NM_175124	67867.0	Mm.31247	NM_027413	ENSMUSG00000030556	Lrrc28	1300004K21Rik|2210012C09Rik|2310058O11Rik	leucine rich repeat containing 28	protein-coding	1.3536935848369	1.7354008876813	3.1193382655352	1.80208307768732	2.3821713352295	1.2370542310115	2.16790081904485	2.32282315035447	-0.262356556733748	0.799557479525948	0.998431161219273
Merged-chr3-31435763-3	chr3	31435667	31435867	+	944.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-125448.0	NM_172861	241919.0	Mm.285366	NM_172861	ENSMUSG00000069072	Slc7a14	A930013N06|BC061928	solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44342095-2	chr7	44341995	44342195	+	791.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001034115, intron 15 of 24)	intron (NM_001034115, intron 15 of 24)	31831.0	NM_001034115	243961.0	Mm.360368	NM_001034115	ENSMUSG00000038738	Shank1	-	SH3 and multiple ankyrin repeat domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-126164799-4	chr2	126164697	126164897	+	996.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026981, exon 5 of 5)	exon (NM_026981, exon 5 of 5)	12656.0	NM_026981	69185.0	Mm.29019	NM_026981	ENSMUSG00000023330	Dtwd1	1810033A06Rik	DTW domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-65614440-4	chr6	65614321	65614521	+	941.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001495, intron 6 of 7)	MTD|LTR|ERVL-MaLR	24023.0	NM_001001495	414084.0	Mm.117558	NM_001001495	ENSMUSG00000044162	Tnip3	9030611K07Rik|ABIN-3|LIND	TNFAIP3 interacting protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-43801453-2	chr13	43801353	43801553	+	847.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009856, intron 4 of 4)	intron (NM_009856, intron 4 of 4)	16341.0	NM_001289915	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36038962-4	chr1	36038868	36039068	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29432.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-73558623-4	chr7	73558531	73558731	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_037569)	promoter-TSS (NR_037569)	-236.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-32565972-1	chr11	32565872	32566072	+	551.0	f1_balb.idr	intron (NM_009288, intron 2 of 18)	MER2|DNA|TcMar-Tigger	32706.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	-0.945652004264195	-0.929470740898141	-0.93933099423623	-0.94170658925479	-0.945064975912065	-0.729694619580047	-0.938652044346807	-0.28356358833229	3.06556510657712	0.309981025068092	1
Merged-chr14-44988351-8	chr14	44988260	44988460	+	984.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_008964, exon 1 of 2)	5' UTR (NM_008964, exon 1 of 2)	249.0	NM_008964	19217.0	Mm.4630	NM_008964	ENSMUSG00000037759	Ptger2	EP2|Ptgerep2	prostaglandin E receptor 2 (subtype EP2)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-113639063-2	chr13	113638963	113639163	+	567.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20499.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-60723374-4	chr18	60723277	60723477	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001348146, intron 1 of 6)	intron (NM_001348146, intron 1 of 6)	4189.0	NM_001348103	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6513971-2	chr19	6513871	6514071	+	868.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205234, intron 20 of 22)	intron (NM_001205234, intron 20 of 22)	29099.0	NM_009203	20521.0	Mm.391146	NM_009203	ENSMUSG00000061742	Slc22a12	AI987855|OAT4L|Rst|Slc22al2|URAT1	solute carrier family 22 (organic anion/cation transporter), member 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-61452331-3	chr10	61452255	61452455	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010124, intron 1 of 2)	CpG	314.0	NM_010124	13688.0	Mm.259516	NM_010124	ENSMUSG00000020091	Eif4ebp2	2810011I19Rik|4E-BP2|AA792569|BC010348|PHAS-II	eukaryotic translation initiation factor 4E binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-45220692-2	chr19	45220597	45220797	+	796.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14539.0	NM_010691	16814.0	Mm.116815	NM_010691	ENSMUSG00000025216	Lbx1	Lbx1h	ladybird homeobox 1	protein-coding	2.37934419554234	1.98512038560231	1.63638415797055	1.00825634922776	1.36487356165099	2.41540095867453	1.03163380224346	1.43321037582125	-0.449739474681531	0.707123805340397	0.998431161219273
Merged-chr5-148708216-4	chr5	148708121	148708321	+	955.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-33619.0	NR_028285	70138.0	Mm.417834	NR_028285	ENSMUSG00000086494	2210417A02Rik	AV081004	RIKEN cDNA 2210417A02 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-28099378-4	chr3	28099266	28099466	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008875, intron 19 of 25)	intron (NM_008875, intron 19 of 25)	115195.0	NM_008875	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-34688324-2	chr12	34688224	34688424	+	610.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271386, intron 3 of 27)	intron (NM_001271386, intron 3 of 27)	-159435.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	-0.307599413606951	-0.435608221664644	0.00603707273124099	-0.44234586657191	-0.44647756077421	-0.434748763848546	0.128047166996573	-0.441834296251783	0.123730437383921	0.961598102637959	1
Merged-chr19-10860772-2	chr19	10860672	10860872	+	842.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_133804, intron 8 of 10)	intron (NM_133804, intron 8 of 10)	9007.0	NM_133804	98170.0	Mm.490254	NM_133804	ENSMUSG00000024736	Tmem132a	6720481D13Rik|Hspa5bp1|Orai1|R74613	transmembrane protein 132A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-115343264-4	chr10	115343176	115343376	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359472, intron 6 of 6)	intron (NM_001359472, intron 6 of 6)	18973.0	NM_001359470	67226.0	Mm.29647	NM_133683	ENSMUSG00000069520	Tmem19	2810428F02Rik|AW125171	transmembrane protein 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-38482831-2	chr2	38482731	38482931	+	742.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28866.0	NM_021606	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-92082119-2	chr1	92082019	92082219	+	788.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_207225, intron 2 of 26)	intron (NM_207225, intron 2 of 26)	98222.0	NM_207225	208727.0	Mm.318567	NM_207225	ENSMUSG00000026313	Hdac4	4932408F19Rik|HD4	histone deacetylase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-116171094-2	chr9	116171022	116171222	+	744.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_009371, intron 1 of 7)	intron (NM_009371, intron 1 of 7)	4241.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	2.43596093032166	2.49818643613789	2.40702312477735	2.02267641785617	2.08289406286567	3.33228084699502	3.73517489247716	1.33651731660295	1.12109865141207	0.203009196644738	0.689350285285913
Merged-chr8-71519206-4	chr8	71519131	71519331	+	779.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7462.0	NM_032398	84094.0	Mm.260768	NM_032398	ENSMUSG00000034845	Plvap	MECA32|Pv1	plasmalemma vesicle associated protein	protein-coding	3.82133583469315	3.23231904300052	3.95086343961914	4.20624121787816	3.68660612110845	2.6510202644265	3.54753898216472	3.86454840342601	-0.486898614015557	0.365515896917038	0.861036332257394
Merged-chr3-20127324-1	chr3	20127224	20127424	+	541.0	f1_c57bl6.idr	intron (NM_001355261, intron 5 of 7)	intron (NM_001355261, intron 5 of 7)	27792.0	NM_001355261	27357.0	Mm.6375	NM_013755	ENSMUSG00000019528	Gyg	AU017667|GN1|Gyg1	glycogenin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5724747-4	chr19	5724639	5724839	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114595, intron 1 of 17)	intron (NM_001114595, intron 1 of 17)	1578.0	NM_001114595	114601.0	Mm.210447	NM_053252	ENSMUSG00000024937	Ehbp1l1	G430002G23Rik	EH domain binding protein 1-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-145758920-4	chr3	145758882	145759082	+	764.402771	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026993, exon 1 of 6)	exon (NM_026993, exon 1 of 6)	290.0	NM_026993	69219.0	Mm.234247	NM_026993	ENSMUSG00000028194	Ddah1	2410006N07Rik|2510015N06Rik|AI987801|AW050362	dimethylarginine dimethylaminohydrolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122549851-2	chr8	122549752	122549952	+	695.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037298, intron 1 of 50)	intron (NM_001037298, intron 1 of 50)	1477.0	NM_001037298	234839.0	Mm.37324	NM_001037298	ENSMUSG00000014444	Piezo1	9630020g22|Fam38a|mKIAA0233	piezo-type mechanosensitive ion channel component 1	protein-coding	0.270996845920556	0.671393000571372	0.287073529540593	0.848227361131663	0.272499555471046	0.679505246278574	1.10628139520849	0.282110981806937	0.527771545949177	0.78120906990073	1
Merged-chr18-53903803-4	chr18	53903648	53903848	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152809, intron 3 of 12)	intron (NM_152809, intron 3 of 12)	41635.0	NM_152809	70425.0	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-111562620-4	chr8	111562525	111562725	+	979.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168623, intron 1 of 4)	intron (NM_001168623, intron 1 of 4)	24282.0	NM_001168623	170737.0	Mm.271578	NM_133206	ENSMUSG00000033545	Znrf1	B830022L21Rik|Rnf42|Zrfp1|nin283	zinc and ring finger 1	protein-coding	2.36337451463489	1.05636779459135	1.48939558134036	1.99703688765614	1.99878620074345	1.06206166924819	1.03628468736005	2.58194299127476	0.0762309881043914	0.951134368915026	0.998431161219273
Merged-chr15-51988053-2	chr15	51987953	51988153	+	750.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009009, intron 1 of 13)	intron (NM_009009, intron 1 of 13)	3707.0	NM_009009	19357.0	Mm.182628	NM_009009	ENSMUSG00000022314	Rad21	SCC1|mKIAA0078	RAD21 cohesin complex component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117333221-2	chr11	117333121	117333321	+	748.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113488, intron 1 of 9)	intron (NM_001113488, intron 1 of 9)	908.0	NM_001113488	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-53980096-2	chr17	53979998	53980198	+	770.0	f0_balb.idr|f1_balb.idr	intron (NM_018751, intron 1 of 7)	L1_Mur3|LINE|L1	10533.0	NM_018751	20888.0	Mm.10108	NM_018751	ENSMUSG00000023943	Sult1c1	(PST)G|P-SULT|ST1C1|Stp2|Sult1a2|mOLFST	sulfotransferase family, cytosolic, 1C, member 1	protein-coding	1.10280082749255	1.17991618867078	1.89249401429673	1.95939288547109	1.97522308048625	2.33183724893828	1.90761171699447	2.26823511128857	1.51044675478591	0.162999191583028	0.625345651443135
Merged-chr11-6415070-2	chr11	6414970	6415170	+	971.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008907)	promoter-TSS (NM_008907)	-800.0	NM_008907	268373.0	Mm.5246	NM_008907	ENSMUSG00000071866	Ppia	2700098C05|Cphn|CyP-18|CypA	peptidylprolyl isomerase A	protein-coding	-1.5374591315858	-1.50584429756967	-1.5154048843228	-1.52325823494024	-1.24909732825793	-1.35334080236643	-1.51324057704399	-1.52185248893451	1.98126694062257	0.567575466249438	1
Merged-chr15-100622371-4	chr15	100622269	100622469	+	994.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033872, intron 3 of 3)	intron (NM_001033872, intron 3 of 3)	6707.0	NM_011873	23994.0	Mm.486175	NM_011873	ENSMUSG00000000346	Dazap2	AI314727|Brbp|Gcap28|Prtb|gt6-12|mKIAA0058	DAZ associated protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167942972-4	chr2	167942878	167943078	+	916.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011201, intron 1 of 8)	intron (NM_011201, intron 1 of 8)	10651.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166730764-4	chr2	166730658	166730858	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16926.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-45927713-2	chr5	45927613	45927813	+	1000.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_110478, exon 2 of 3)	non-coding (NR_110478, exon 2 of 3)	4696.0	NR_110478	78106.0	Mm.243807	NR_110478	ENSMUSG00000106602	4930405L22Rik	-	RIKEN cDNA 4930405L22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-6471244-3	chr2	6471154	6471354	+	846.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	118518.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-40222719-4	chr12	40222548	40222748	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045157)	promoter-TSS (NR_045157)	163.0	NR_035459	100316693.0		NR_035459	ENSMUSG00000089371	Mir1938	mir-1938|mmu-mir-1938	microRNA 1938	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-71489086-4	chr4	71488991	71489191	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	711802.0	NM_011599	21885.0	Mm.278444	NM_011599	ENSMUSG00000008305	Tle1	C230057C06Rik|Estm14|Grg-1|Grg1|Tle4l	transducin-like enhancer of split 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-90163404-3	chr9	90163360	90163560	+	690.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003911, intron 1 of 23)	CpG	482.0	NM_001311115	108153.0	Mm.102141	NM_001003911	ENSMUSG00000032363	Adamts7	ADAM-TS7|ADAMTS7B	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-67851410-2	chr9	67851310	67851510	+	859.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_177184, intron 1 of 84)	(CA)n|Simple_repeat|Simple_repeat	11014.0	NM_177184	320528.0	Mm.241454	NM_177184	ENSMUSG00000035284	Vps13c	AI552542|AV026040|C230055H22Rik|W51662|chorein	vacuolar protein sorting 13C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-24104076-4	chr2	24103981	24104181	+	905.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1I|LTR|ERVL-MaLR	-7486.0	NR_110359	227606.0	Mm.301625	NM_199059	ENSMUSG00000061809	Tbpl2	Gm348|Trf3	TATA box binding protein like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-30738803-3	chr15	30738706	30738906	+	649.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355502, intron 9 of 21)	intron (NM_001355502, intron 9 of 21)	-300320.0	NR_045186	73784.0	Mm.66947	NR_045186	ENSMUSG00000115474	4930430F21Rik	-	RIKEN cDNA 4930430F21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-64496249-4	chr11	64496163	64496363	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178870, intron 1 of 1)	intron (NM_178870, intron 1 of 1)	-59589.0	NR_028445	654805.0	Mm.436132	NR_028445		F930015N05Rik	-	RIKEN cDNA F930015N05 gene	ncRNA	5.25853113218035	5.36232900821052	5.41619670564474	5.39364110526129	4.60247992870482	4.22404385477397	4.99382199172991	4.22347092407779	-0.964072843085781	0.00324144894112193	0.0480134622167666
Merged-chr17-43058017-1	chr17	43057917	43058117	+	903.0	f1_balb.idr	intron (NM_178589, intron 3 of 5)	intron (NM_178589, intron 3 of 5)	41462.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	2.24354233075039	1.10838631891428	1.96865219794734	1.06410540762726	2.18887322433697	1.59049059141304	1.33628213949545	2.45978015674304	0.692461566292752	0.553282109369992	0.959658647102134
Merged-chr8-104342014-2	chr8	104341914	104342114	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_024217, intron 1 of 4)	intron (NM_024217, intron 1 of 4)	1420.0	NM_024217	68119.0	Mm.390108	NM_024217	ENSMUSG00000031875	Cmtm3	9430096L06Rik|AI413895|BNAS2|Cklfsf3	CKLF-like MARVEL transmembrane domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-34913377-3	chr2	34913275	34913475	+	857.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028716, intron 1 of 14)	CpG	601.0	NM_028716	74016.0	Mm.65691	NM_028716	ENSMUSG00000026873	Phf19	3110009G19Rik|3321402G02Rik	PHD finger protein 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-53011437-3	chr2	53011346	53011546	+	968.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	153578.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-28417706-4	chr13	28417605	28417805	+	969.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	275221.0	NM_023746	28078.0	Mm.155058	NM_023746	ENSMUSG00000017064	Prl5a1	1600013P04Rik|D13Wsu14e|Ghd24|PLP-L|Prlpl	prolactin family 5, subfamily a, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-162040721-3	chr1	162040601	162040801	+	918.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172646, intron 16 of 19)	L1MC4|LINE|L1	35732.0	NR_040562	72753.0	Mm.452125	NR_040562	ENSMUSG00000090260	2810442N19Rik	-	RIKEN cDNA 2810442N19 gene	ncRNA	-0.0359149084171069	-0.291747914899463	-0.296285684931937	-0.299787468655617	-0.0293500635516601	-0.290725170065733	0.484929583725502	-0.299175661688633	2.15170210981914	0.380760515266019	1
Merged-chr17-46202708-4	chr17	46202626	46202826	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030715)	promoter-TSS (NM_030715)	-101.0	NM_030715	80905.0	Mm.311585	NM_030715	ENSMUSG00000023953	Polh	RAD30A|XPV	polymerase (DNA directed), eta (RAD 30 related)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-11158288-2	chr4	11158188	11158388	+	629.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199105, intron 1 of 4)	intron (NM_001199105, intron 1 of 4)	1847.0	NM_021897	60599.0	Mm.393018	NM_021897	ENSMUSG00000028211	Trp53inp1	2700057G22Rik|SIP|SIP18|SIP27|Stinp|Teap|p53DINP1	transformation related protein 53 inducible nuclear protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-112449775-3	chr2	112449674	112449874	+	714.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5251.0	NM_133749	73024.0	Mm.268027	NM_133749	ENSMUSG00000055943	Emc7	2900064A13Rik|AI451465|ORF3|c11orf3	ER membrane protein complex subunit 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44344001-4	chr9	44343888	44344088	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013551, intron 1 of 13)	CpG	240.0	NM_013551	15288.0	Mm.247676	NM_013551	ENSMUSG00000032126	Hmbs	PBGD|T25658|Ups|Uros1	hydroxymethylbilane synthase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-6350651-2	chr4	6350551	6350751	+	813.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15029.0	NM_016807	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98635572-2	chr11	98635518	98635718	+	549.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001007461, intron 8 of 10)	intron (NM_001007461, intron 8 of 10)	9258.0	NM_001007461	450219.0	Mm.371065	NM_001007461	ENSMUSG00000064224	Gsdma3	Bsk|Dfl|Fgn|Gsdm1l|Gsdm3|Rco2|Rim3	gasdermin A3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30121860-4	chr7	30121783	30121983	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081007)	promoter-TSS (NM_001081007)	-49.0	NM_001081007	233060.0	Mm.443484	NM_001081007	ENSMUSG00000074220	Zfp382	4930428B01Rik|5930415A09Rik|KS1|Znf382	zinc finger protein 382	protein-coding	2.77819451669682	3.62304570305447	3.33430591904125	3.85618968555851	3.40236712729954	4.11457698154639	3.05089695929094	2.55072882378808	-0.0780677462973123	0.899501861160983	0.998431161219273
Merged-chr5-65102833-4	chr5	65102738	65102938	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4730.0	NM_001347355	71778.0	Mm.10281	NM_175174	ENSMUSG00000054920	Klhl5	1300013C10Rik	kelch-like 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-145351439-4	chr6	145351322	145351522	+	917.929199	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36203.0	NR_003625	381827.0	Mm.179075	NM_001001987		1700073E17Rik	-	ribosomal protein L7 pseudogene	pseudo	1.89682766120198	1.29675953072331	2.98316704246538	2.54338681883419	1.91314086900334	1.57761218264498	2.72532621955388	1.86362832082871	-0.541008746055126	0.584982616421814	0.967268722441911
Merged-chr17-56938972-4	chr17	56938893	56939093	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-3605.0	NM_022328	64144.0	Mm.148748	NM_022328	ENSMUSG00000024212	Mllt1	AA407901|BAM11|ENL|LTG19	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-46604963-3	chr18	46604859	46605059	+	774.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010120, intron 2 of 2)	intron (NM_010120, intron 2 of 2)	7255.0	NM_010120	13664.0	Mm.262037	NM_010120	ENSMUSG00000057561	Eif1a	C76390|Ef1a|Eftu|Eif4c|eIF-1A|eIF-4C	eukaryotic translation initiation factor 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71367483-4	chr8	71367385	71367585	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025917, intron 1 of 7)	intron (NM_025917, intron 1 of 7)	268.0	NM_025917	67023.0	Mm.41890	NM_025917	ENSMUSG00000002395	Use1	2010315L10Rik|5730403H22Rik|AV002165|D12|Ed2|Q-snare|p31	unconventional SNARE in the ER 1 homolog (S. cerevisiae)	protein-coding	4.77903555895415	4.04583633602561	4.12750927189611	4.25598476889672	5.48209884619266	4.71135154353381	4.01611049926385	4.85572078836778	0.663171155269564	0.113730529983155	0.528279087395026
Merged-chr5-130849417-2	chr5	130849317	130849517	+	780.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	400625.0	NM_021371	140904.0	Mm.40875	NM_021371	ENSMUSG00000060371	Caln1	9630012C17Rik|Cabp8|MNCb-0849	calneuron 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-45185439-4	chr2	45185325	45185525	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-67983.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-135183225-1	chr6	135183125	135183325	+	749.0	f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-5255.0	NR_040296	100502888.0	Mm.437844	NR_040296	ENSMUSG00000108239	Gm19434	-	predicted gene, 19434	ncRNA	3.13707368030838	3.20692857429577	1.08043897003127	2.18069338643909	1.65673478155774	1.89483113966514	1.08911364828363	1.33587371373219	-2.58542950051379	0.0157822978560791	0.150320338354461
Merged-chr11-94330368-1	chr11	94330268	94330468	+	605.0	f1_c57bl6.idr	intron (NM_027799, intron 1 of 4)	L2a|LINE|L2	2367.0	NM_146024	71452.0	Mm.141054	NM_027799	ENSMUSG00000020864	Ankrd40	1110011C06Rik|5530600A18Rik|Gcap15	ankyrin repeat domain 40	protein-coding	-1.04972294872659	-0.842190099534501	-0.459480222790889	-1.04612043450792	-1.04918716495468	-1.026801826266	-1.03858346348168	-1.04574123317769	-2.85191801975984	0.360205146402349	1
Merged-chr19-47138309-4	chr19	47138208	47138408	+	969.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133746)	promoter-TSS (NM_133746)	-14.0	NM_133746	72691.0	Mm.31663	NM_133746	ENSMUSG00000033033	Calhm2	2810048G17Rik|Fam26b	calcium homeostasis modulator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-144243639-4	chr1	144243507	144243707	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5497.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100640767-2	chr11	100640667	100640867	+	593.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177790, intron 1 of 7)	intron (NM_177790, intron 1 of 7)	9926.0	NM_177790	278304.0	Mm.274734	NM_177790	ENSMUSG00000014198	Zfp385c	A930006D11Rik|Znf385c	zinc finger protein 385C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-10325750-2	chr17	10325650	10325850	+	690.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045461, intron 2 of 2)	intron (NR_045461, intron 2 of 2)	1148.0	NR_045461	76634.0	Mm.491052	NR_045461	ENSMUSG00000099384	1700110C19Rik	-	RIKEN cDNA 1700110C19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78532287-4	chr15	78532169	78532369	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2618.0	NM_028331	72709.0	Mm.34776	NM_028331	ENSMUSG00000022440	C1qtnf6	2810036M19Rik|CTRP6	C1q and tumor necrosis factor related protein 6	protein-coding	5.39952503100491	4.92582436518271	5.21413456738175	5.68400042501168	5.36721342719027	5.77121747105562	5.31749844502159	5.83393441135546	0.284079365928537	0.326834860845087	0.829199211128231
Merged-chr16-92415888-4	chr16	92415788	92415988	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081549, intron 1 of 3)	intron (NM_001081549, intron 1 of 3)	-15810.0	NM_019466	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-76672609-3	chr2	76672456	76672656	+	758.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355080, intron 1 of 4)	intron (NM_001355080, intron 1 of 4)	542.0	NM_001355079	14231.0	Mm.24720	NM_010222	ENSMUSG00000002732	Fkbp7	23kDa|FKBP-7|FKBP23	FK506 binding protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59808631-2	chr15	59808531	59808731	+	878.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-13672.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-75080489-2	chr8	75080389	75080589	+	902.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13129.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3574907-4	chr4	3574828	3575028	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_054089)	promoter-TSS (NM_054089)	49.0	NM_054089	116940.0	Mm.171323	NM_054089	ENSMUSG00000028233	Tgs1	D4Ertd800e|Ncoa6ip|Pimt	trimethylguanosine synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-35482505-4	chr13	35482396	35482596	+	912.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-177366.0	NM_009881	12593.0	Mm.29002	NM_009881	ENSMUSG00000059288	Cdyl	AI325931	chromodomain protein, Y chromosome-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-13605463-3	chr6	13605373	13605573	+	903.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028990, intron 1 of 4)	intron (NM_028990, intron 1 of 4)	2625.0	NR_155435	101118.0	Mm.254845	NM_028990	ENSMUSG00000029569	Tmem168	5730526F17Rik|8430437G11Rik|AI462344|AI504145	transmembrane protein 168	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-37768292-2	chr3	37768192	37768392	+	673.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43932.0	NM_198657	381438.0	Mm.490549	NM_198657	ENSMUSG00000058174	Gm5148	EG381438	predicted gene 5148	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-184083275-3	chr1	184083175	184083375	+	955.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48894.0	NM_022019	63953.0	Mm.404024	NM_022019	ENSMUSG00000039384	Dusp10	2610306G15Rik|AI158871|MKP-5|MKP5	dual specificity phosphatase 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-78895466-3	chr1	78895367	78895567	+	880.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151519, intron 3 of 3)	intron (NR_151519, intron 3 of 3)	78556.0	NM_021342	57814.0	Mm.24386	NM_021342	ENSMUSG00000047330	Kcne4	AW487937|MiRP3	potassium voltage-gated channel, Isk-related subfamily, gene 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71298694-4	chr8	71298603	71298803	+	937.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142322, intron 2 of 39)	L1MB5|LINE|L1	25989.0	NM_001142323	17925.0	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75450915-5	chr11	75450868	75451068	+	853.7333369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_138950, exon 1 of 10)	exon (NM_138950, exon 1 of 10)	3749.0	NM_138950	192652.0	Mm.340378	NM_138950	ENSMUSG00000045374	Wdr81	BC054822|Gm883|mFLJ00182|nur5	WD repeat domain 81	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91878990-2	chr16	91878890	91879090	+	742.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_010587, intron 28 of 38)	B3A|SINE|B2	52640.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-73012125-2	chr10	73012025	73012225	+	817.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_040646, intron 2 of 4)	intron (NR_040646, intron 2 of 4)	74580.0	NR_040646	327768.0	Mm.417745	NR_040646	ENSMUSG00000111994	A330049N07Rik	-	RIKEN cDNA A330049N07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56279581-2	chr17	56279481	56279681	+	645.583374	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_025836, exon 8 of 8)	3' UTR (NM_025836, exon 8 of 8)	-2814.0	NM_174989	106759.0	Mm.203952	NM_174989	ENSMUSG00000047123	Ticam1	AW046014|AW547018|TICAM-1|TRIF	toll-like receptor adaptor molecule 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-83485471-4	chr17	83485365	83485565	+	863.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28868.0	NM_009187	20463.0	Mm.30072	NM_009187	ENSMUSG00000024248	Cox7a2l	COX7AR|COX7RP|EB1|SIG-81|SIG81|Silg81	cytochrome c oxidase subunit VIIa polypeptide 2-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-35153202-3	chr12	35153106	35153306	+	966.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41691.0	NR_030449	751520.0		NR_030449	ENSMUSG00000076253	Mir680-3	Mirn680-3	microRNA 680-3	ncRNA	0.804317059396943	0.884910300686379	0.859752892357824	1.29517172460811	2.54934133670618	2.14085038357549	1.13352736494757	2.16569206124797	4.02872544826804	0.00423848581911958	0.0588126671447148
Merged-chr17-30962875-2	chr17	30962775	30962975	+	546.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177465, intron 2 of 21)	intron (NM_177465, intron 2 of 21)	8192.0	NM_177465	52020.0	Mm.25923	NM_177465	ENSMUSG00000054134	Umodl1	D17Ertd488e	uromodulin-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-79958941-2	chr10	79958842	79959042	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 3 of 4)	intron (NR_038088, intron 3 of 4)	-1210.0	NM_175450	216156.0	Mm.35828	NM_175450	ENSMUSG00000035754	Wdr18	2310012I10Rik|AU044733|AW122032	WD repeat domain 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-23535294-4	chr13	23535186	23535386	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145073)	promoter-TSS (NM_145073)	-132.0	NM_145073	97908.0	Mm.261657	NM_145073	ENSMUSG00000099517	Hist1h3g	H3.1-221|M32460	histone cluster 1, H3g	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-103544357-3	chr12	103544261	103544461	+	828.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028980, intron 2 of 24)	intron (NM_028980, intron 2 of 24)	11796.0	NM_028980	74521.0	Mm.248619	NM_028980	ENSMUSG00000021209	Ppp4r4	8430415E04Rik|mKIAA1622	protein phosphatase 4, regulatory subunit 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33923959-2	chr16	33923859	33924059	+	664.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 10 of 14)	intron (NM_001145884, intron 10 of 14)	43079.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-36975267-2	chr10	36975167	36975367	+	847.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008229, intron 1 of 13)	intron (NM_008229, intron 1 of 13)	723.0	NM_008229	15182.0	Mm.19806	NM_008229	ENSMUSG00000019777	Hdac2	D10Wsu179e|YAF1|Yy1bp|mRPD3	histone deacetylase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-8349737-4	chr5	8349616	8349816	+	981.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001007220, intron 2 of 28)	intron (NM_001007220, intron 2 of 28)	18444.0	NM_001007221	11496.0	Mm.275895	NM_001007220	ENSMUSG00000040537	Adam22	2900022I03Rik|AI854032|MDC2	a disintegrin and metallopeptidase domain 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-150665035-3	chr5	150664967	150665167	+	865.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362416, intron 1 of 7)	intron (NM_001362416, intron 1 of 7)	545.0	NM_001362416	381695.0	Mm.246934	NM_201369	ENSMUSG00000029655	N4bp2l2	2700092H06Rik|Gm38758|zag1	NEDD4 binding protein 2-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-142703093-4	chr2	142702994	142703194	+	756.200012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355123, intron 22 of 26)	L1MA4A|LINE|L1	198370.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6294341-2	chr19	6294241	6294441	+	634.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_010119, exon 3 of 5)	exon (NM_010119, exon 3 of 5)	-12116.0	NM_001033342	240505.0	Mm.329622	NM_001033342	ENSMUSG00000024769	Cdc42bpg	BC046418|MRCKgamma	CDC42 binding protein kinase gamma (DMPK-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-95829828-2	chr11	95829728	95829928	+	793.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001163464)	TTS (NM_001163464)	5328.0	NM_153104	237928.0	Mm.133075	NM_153104	ENSMUSG00000050860	Phospho1	D11Moh36|Phospo1	phosphatase, orphan 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-80315094-4	chr2	80314978	80315178	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024181)	promoter-TSS (NM_024181)	-388.0	NM_024181	66861.0	Mm.21762	NM_024181	ENSMUSG00000027006	Dnajc10	1200006L06Rik|D2Ertd706e|ERdj5|JPDI	DnaJ heat shock protein family (Hsp40) member C10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-41751619-4	chr15	41751456	41751656	+	741.924988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152565, intron 3 of 17)	intron (NR_152565, intron 3 of 17)	-37439.0	NM_001358976	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70014476-2	chr8	70014357	70014557	+	635.0	f0_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-18073.0	NM_145596	234366.0	Mm.270044	NM_145596	ENSMUSG00000036180	Gatad2a	1110066C11Rik|BC031407|C80248	GATA zinc finger domain containing 2A	protein-coding	-0.643426114426009	-0.13603208644087	-0.63614878037246	-0.638886248565743	-0.642751148453361	-0.631796812660116	-0.635365850149794	-0.0959543066532267	0.158923990479681	0.956118735169945	1
Merged-chr13-117027392-2	chr13	117027292	117027492	+	590.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1876.0	NM_001081009	52552.0	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-67641487-4	chr18	67641377	67641577	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134138)	promoter-TSS (NM_134138)	-122.0	NM_001081073	225659.0	Mm.111928	NM_001081073	ENSMUSG00000073542	Cep76	6230425F05Rik|9630013E05	centrosomal protein 76	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-30948563-4	chr1	30948479	30948679	+	952.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011200, intron 1 of 5)	intron (NM_011200, intron 1 of 5)	1131.0	NR_002688	433406.0	Mm.389003	NR_002688		Gm13363	-	predicted gene 13363	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-45040411-2	chr19	45040311	45040511	+	562.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001195265, intron 2 of 15)	intron (NM_001195265, intron 2 of 15)	5361.0	NM_001195265	100503041.0	Mm.329877	NM_177605	ENSMUSG00000074818	Pdzd7	9130207N01|EG435601|Pdzk7	PDZ domain containing 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-86727810-4	chr10	86727724	86727924	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003910, intron 4 of 15)	intron (NM_001003910, intron 4 of 15)	15059.0	NM_153595	103220.0	Mm.440762	NM_153595	ENSMUSG00000044937	Ttc41	AI449705|AU041509|Gnn	tetratricopeptide repeat domain 41	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-82571237-2	chr11	82571137	82571337	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62116.0	NR_033582	791422.0	Mm.341562	NR_033582	ENSMUSG00000069796	Gm11426	-	predicted gene 11426	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-96632420-2	chr9	96632320	96632520	+	712.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053268)	promoter-TSS (NM_053268)	-917.0	NM_053268	114713.0	Mm.124502	NM_053268	ENSMUSG00000032413	Rasa2	5430433H21Rik|AA517451|AU023900|GAP1m	RAS p21 protein activator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-130716812-7	chr1	130716680	130716880	+	848.619019	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027859)	promoter-TSS (NR_027859)	-547.0	NM_178691	226418.0	Mm.106553	NM_178691	ENSMUSG00000046404	Yod1	6330564D18Rik|9930028C20Rik|Hshin7	YOD1 deubiquitinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-85503216-2	chr8	85503116	85503316	+	596.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173866, intron 2 of 11)	intron (NM_173866, intron 2 of 11)	10599.0	NM_173866	108682.0	Mm.200423	NM_173866	ENSMUSG00000031700	Gpt2	4631422C05Rik|ALT2|AU014768|AU041193|C87201	glutamic pyruvate transaminase (alanine aminotransferase) 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-8965268-1	chr19	8965168	8965368	+	585.0	f1_c57bl6.idr	exon (NM_197993, exon 9 of 9)	exon (NM_197993, exon 9 of 9)	-1773.0	NM_026007	67160.0	Mm.247762	NM_026007	ENSMUSG00000071644	Eef1g	2610301D06Rik|AA407312|EF1G	eukaryotic translation elongation factor 1 gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-18998248-4	chr2	18998152	18998352	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355149)	promoter-TSS (NM_001355149)	-67.0	NR_024323	74629.0	Mm.117687	NR_024323	ENSMUSG00000026736	4930426L09Rik	-	RIKEN cDNA 4930426L09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-123575930-3	chr4	123575787	123575987	+	772.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199137, intron 1 of 92)	intron (NM_001199137, intron 1 of 92)	-40533.0	NR_105824	102465214.0		NR_105824	ENSMUSG00000099005	Mir6398	Gm27657|mmu-mir-6398	microRNA 6398	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80065509-3	chr7	80065414	80065614	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045695, intron 2 of 2)	intron (NR_045695, intron 2 of 2)	9743.0	NR_045695	100859962.0	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	1.66299266821381	1.35306306195683	2.64064107645241	2.65517661302974	2.24384836379946	3.24852687645884	1.59762307875136	2.75507483771152	0.807329605919534	0.393907482328148	0.88239394566339
Merged-chr11-21549958-4	chr11	21549862	21550062	+	983.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21972.0	NM_008618	17449.0	Mm.212703	NM_008618	ENSMUSG00000020321	Mdh1	B230377B03Rik|D17921|MDH-s|MDHA|Mor-2|Mor2	malate dehydrogenase 1, NAD (soluble)	protein-coding	3.19725946787978	4.02634255402073	3.83727467438494	3.09026826515723	2.72467226314456	3.92466182999187	3.98687341925839	2.99606761868337	-0.115780780962466	0.844300694225039	0.998431161219273
Merged-chr19-43801639-4	chr19	43801535	43801735	+	975.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013806, intron 7 of 31)	intron (NM_013806, intron 7 of 31)	19327.0	NM_013806	12780.0	Mm.39054	NM_013806	ENSMUSG00000025194	Abcc2	AI173996|Abc30|Cmoat|Mrp2|cMRP	ATP-binding cassette, sub-family C (CFTR/MRP), member 2	protein-coding	0.406254268312607	1.32533183446421	0.623659406327617	1.20693780901657	0.836657294513351	0.437355885076723	0.427941678334455	0.606824875246851	-1.93771534309635	0.256519170261704	1
Merged-chr14-51844107-4	chr14	51843993	51844193	+	842.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9675.0	NM_053111	93719.0	Mm.221324	NM_053111	ENSMUSG00000062148	Ear6	-	eosinophil-associated, ribonuclease A family, member 6	protein-coding	2.69566015258106	2.91371247207091	3.01495369412759	2.50557196333019	2.80730409903191	3.23004376490616	2.1085320174229	3.25775105925345	0.254003898631339	0.71706872959267	0.998431161219273
Merged-chr6-121224570-3	chr6	121224505	121224705	+	664.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017379, intron 4 of 4)	intron (NM_017379, intron 4 of 4)	13871.0	NM_017379	53857.0	Mm.32884	NM_017379	ENSMUSG00000030137	Tuba8	-	tubulin, alpha 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150092047-2	chr4	150091947	150092147	+	568.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177366, intron 1 of 3)	intron (NM_177366, intron 1 of 3)	4544.0	NM_177366	269604.0	Mm.219307	NM_177366	ENSMUSG00000047875	Gpr157	F730108M23Rik	G protein-coupled receptor 157	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115477618-2	chr5	115477498	115477698	+	659.75	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001167691)	TTS (NM_001167691)	6699.0	NM_001167691	75387.0	Mm.332616	NM_133760	ENSMUSG00000029524	Sirt4	4930596O17Rik	sirtuin 4	protein-coding	0.507434457249253	0.156847686478391	0.470872603068082	0.146628030294435	0.140347994460345	0.768830047250617	0.606759710475023	0.147404883248097	0.817054813672258	0.685250293765973	1
Merged-chr16-16072800-2	chr16	16072700	16072900	+	691.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355731, intron 5 of 18)	intron (NM_001355731, intron 5 of 18)	74051.0	NM_001355731	224008.0	Mm.244703	NM_146068	ENSMUSG00000041974	Spidr	2310008H04Rik|Kiaa0146	scaffolding protein involved in DNA repair	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105323365-2	chr8	105323265	105323465	+	579.25	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_177449, exon 2 of 5)	5' UTR (NM_177449, exon 2 of 5)	2911.0	NM_177449	234684.0	Mm.381717	NM_177449	ENSMUSG00000041679	Lrrc29	A630024J02Rik|FBL9|FBXL9	leucine rich repeat containing 29	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-75503553-4	chr18	75503474	75503674	+	991.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201354, intron 9 of 11)	intron (NM_201354, intron 9 of 11)	-11071.0	NR_045879	100038353.0	Mm.440724	NR_045879	ENSMUSG00000097712	Gm10532	-	predicted gene 10532	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-74796459-1	chr5	74796359	74796559	+	679.0	f1_balb.idr	Intergenic	L1Md_T|LINE|L1	-93556.0	NM_001159577	16924.0	Mm.440403	NM_010727	ENSMUSG00000029228	Lnx1	Lnx	ligand of numb-protein X 1	protein-coding	-2.18138529563533	-2.15523716995652	-2.1631445789866	-2.16963996020037	-2.05513010215571	-2.15352360143315	-2.16135451490766	-2.16847729006863	0.759018020146679	0.829933115115583	1
Merged-chr6-50566606-4	chr6	50566488	50566688	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015581)	promoter-TSS (NR_015581)	-55.0	NR_027892	73183.0	Mm.430720	NR_015581	ENSMUSG00000085776	5430402O13Rik	3110047M22Rik	RIKEN cDNA 5430402O13 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-23823843-2	chr11	23823743	23823943	+	841.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52873.0	NM_009044	19696.0	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-67825458-4	chr18	67825351	67825551	+	807.104187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027556, intron 14 of 45)	MIRb|SINE|MIR	25344.0	NM_027556	70799.0	Mm.30857	NM_027556	ENSMUSG00000024542	Cep192	4631422C13Rik|D430014P18Rik	centrosomal protein 192	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-35370289-2	chr6	35370189	35370389	+	804.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39443.0	NR_040526	73409.0	Mm.69443	NR_040526	ENSMUSG00000107341	1700065J11Rik	-	RIKEN cDNA 1700065J11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-113592930-4	chr13	113592829	113593029	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_130796, exon 2 of 2)	3' UTR (NM_130796, exon 2 of 2)	25635.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-107891825-2	chr13	107891725	107891925	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1761.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34894363-4	chr17	34894287	34894487	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198886)	promoter-TSS (NM_198886)	-172.0	NM_198886	193736.0	Mm.161119	NM_198886	ENSMUSG00000049823	Zbtb12	BC020447|Bat-9|Bat9|G10|NG35	zinc finger and BTB domain containing 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-60780005-2	chr11	60779905	60780105	+	699.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_175491, exon 1 of 1)	exon (NM_175491, exon 1 of 1)	2480.0	NM_175491	237782.0	Mm.57726	NM_175491	ENSMUSG00000049323	Smcr8	2310076G09Rik|AI642055|D030073L15Rik	Smith-Magenis syndrome chromosome region, candidate 8 homolog (human)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97022025-4	chr11	97021974	97022174	+	863.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_133649, exon 1 of 2)	non-coding (NR_133649, exon 1 of 2)	4344.0	NR_133649	100127433.0	Mm.156282	NR_133649	ENSMUSG00000087067	Gm11532	Sp6os	predicted gene 11532	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97483814-2	chr6	97483726	97483926	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	ORR1E|LTR|ERVL-MaLR	3994.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	-0.168323485401445	-0.511612109984457	-0.514948938637435	-0.362683212784782	0.0188337255523036	-0.510857623314741	-0.514214423260744	-0.517064854850923	0.2953491137596	0.911151982444471	1
Merged-chr13-51419841-2	chr13	51419741	51419941	+	544.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_010101, exon 2 of 2)	exon (NM_010101, exon 2 of 2)	11223.0	NM_010101	13610.0	Mm.136736	NM_010101	ENSMUSG00000067586	S1pr3	AI132464|Edg3|Lpb3|S1p3	sphingosine-1-phosphate receptor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-109875435-4	chr9	109875325	109875525	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007658)	promoter-TSS (NM_007658)	-154.0	NM_007658	12530.0	Mm.307103	NM_007658	ENSMUSG00000032477	Cdc25a	D9Ertd393e	cell division cycle 25A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-71369619-4	chr10	71369503	71369703	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027184, intron 3 of 5)	intron (NM_027184, intron 3 of 5)	21840.0	NM_027184	69718.0	Mm.245867	NM_027184	ENSMUSG00000060733	Ipmk	2410017C19Rik|AA408208|Impk	inositol polyphosphate multikinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-65765161-4	chr17	65765054	65765254	+	994.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133685, intron 1 of 6)	Lx5|LINE|L1	7598.0	NM_133685	106572.0	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-23132455-3	chr5	23132355	23132555	+	854.805542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029990, intron 2 of 2)	RLTR11B|LTR|ERVK	301898.0	NR_040469	269630.0	Mm.425231	NR_040469	ENSMUSG00000073147	5031425E22Rik	-	RIKEN cDNA 5031425E22 gene	ncRNA	3.60335241690738	2.99979520143695	3.39420335395486	1.46863504443682	2.77895681786895	1.87238752674919	2.81073438480272	3.0976070259792	-0.654158203109002	0.424107733112056	0.90112899491419
Merged-chr17-34094128-1	chr17	34094028	34094228	+	787.0	f1_balb.idr	intron (NM_008206, intron 2 of 4)	intron (NM_008206, intron 2 of 4)	1181.0	NR_046183	414076.0	Mm.473092	NR_046183	ENSMUSG00000098197	BC051537	-	cDNA sequence BC051537	ncRNA	1.22266254050513	0.996948347436744	0.339773343224096	0.333498601533526	0.618143806865663	0.559854336708424	0.341560584569439	0.51396873381823	-1.62650740449052	0.35836323081951	1
Merged-chr19-32186644-4	chr19	32186549	32186749	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 5 of 9)	intron (NM_144792, intron 5 of 9)	24364.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97797144-2	chr11	97797044	97797244	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2421.0	NM_010688	16796.0	Mm.271967	NM_010688	ENSMUSG00000038366	Lasp1	AA408629|Def-4|LASP-1|MLN 50|SH3P6|Tg(Col1a1-lacZ)1Ngma	LIM and SH3 protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-61801270-2	chr14	61801170	61801370	+	986.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-118897.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-38473873-4	chr15	38473765	38473965	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GC_rich|Low_complexity|Low_complexity	16682.0	NR_105916	102465574.0		NR_105916	ENSMUSG00000099110	Mir6951	Gm27765|mmu-mir-6951	microRNA 6951	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-3926833-3	chr8	3926734	3926934	+	960.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026972)	promoter-TSS (NM_026972)	7.0	NM_001037800	69165.0	Mm.175163	NM_026972	ENSMUSG00000065987	Cd209b	1810030I22Rik|DC-SIGNR1|OtB7|SIGNR1|mSIGNR1	CD209b antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-165660407-2	chr1	165660307	165660507	+	769.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038846, intron 2 of 5)	intron (NM_001038846, intron 2 of 5)	-25866.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-164972939-4	chr2	164972848	164973048	+	866.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020333, intron 1 of 25)	L2b|LINE|L2	4960.0	NM_020333	57138.0	Mm.252987	NM_020333	ENSMUSG00000017740	Slc12a5	KCC2|mKIAA1176	solute carrier family 12, member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-98818379-2	chr13	98818279	98818479	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2930.0	NM_172591	218503.0	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	-1.84362945061595	-1.81329140012928	-1.67810947190254	-1.83000206547234	-1.84149977556685	-1.81130325271815	-1.67603257143677	-1.82865309133977	0.037684011990387	0.991491645451152	1
Merged-chr14-71332568-2	chr14	71332468	71332668	+	626.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	81295.0	NR_046076	100043132.0	Mm.399336	NR_046075	ENSMUSG00000115139	Gm4251	-	predicted gene 4251	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-100520464-4	chr12	100520346	100520546	+	887.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033213, intron 1 of 19)	CpG	376.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-25465259-2	chr14	25465159	25465359	+	861.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	6074.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5593362-2	chr17	5593262	5593462	+	790.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	MTD|LTR|ERVL-MaLR	100762.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-3648520-4	chr8	3648416	3648616	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7254.0	NM_001204959	57264.0	Mm.1181	NM_022984	ENSMUSG00000012705	Retn	ADSF|Fizz3|Rstn|Xcp4	resistin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171247210-4	chr1	171247114	171247314	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153064)	promoter-TSS (NM_153064)	-92.0	NM_153064	226646.0	Mm.21669	NM_153064	ENSMUSG00000013593	Ndufs2	CI-49kD	NADH dehydrogenase (ubiquinone) Fe-S protein 2	protein-coding	5.66477912714233	6.10875767721868	6.50990353524477	5.9465407829285	4.92911082275877	5.31539730829054	5.26525089479229	4.93492378841702	-1.09523201579559	9.42060808142844e-05	0.0029693192866138
Merged-chr16-70333278-2	chr16	70333187	70333387	+	618.0	f0_c57.idr|f1_balb.idr	intron (NM_028803, intron 1 of 15)	AT_rich|Low_complexity|Low_complexity	19338.0	NM_028803	74185.0	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	-0.814646203414956	-0.948132458442233	-0.260580320090758	-0.961569116139344	-0.964955961651228	-0.945393490738569	-0.957910421812185	-0.96115068189259	-3.02226751932349	0.31744843379996	1
Merged-chr19-4228053-2	chr19	4227953	4228153	+	914.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_132308, intron 2 of 3)	intron (NR_132308, intron 2 of 3)	-3840.0	NM_027196	69745.0	Mm.32518	NM_027196	ENSMUSG00000024854	Pold4	2410012M21Rik|AI463381|AW060307|Polds|p12	polymerase (DNA-directed), delta 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-108618361-1	chr6	108618261	108618461	+	977.0	f0_balb.idr	intron (NR_104577, intron 1 of 6)	intron (NR_104577, intron 1 of 6)	4806.0	NR_040757	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-49608964-4	chr4	49608841	49609041	+	799.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11065.0	NM_025944	67063.0	Mm.454013	NM_025944	ENSMUSG00000039611	Tmem246	2810432L12Rik|9330170P15Rik|AI835809	transmembrane protein 246	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-88201151-4	chr10	88201063	88201263	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027487)	promoter-TSS (NM_027487)	66.0	NM_027487	67282.0	Mm.208465	NM_026070	ENSMUSG00000020056	Washc3	2900091E11Rik|5730495F03Rik|Ccdc53	WASH complex subunit 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6911088-2	chr19	6910988	6911188	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358444)	promoter-TSS (NM_001358444)	-982.0	NM_001358444	54683.0	Mm.279782	NM_012021	ENSMUSG00000024953	Prdx5	AOEB166|AOPP|PLP|Pmp20|Prdx6|PrxV	peroxiredoxin 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98972373-2	chr11	98972273	98972473	+	985.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361954, intron 6 of 7)	intron (NM_001361954, intron 6 of 7)	7501.0	NM_001361954	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129056971-3	chr4	129056863	129057063	+	680.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-1308.0	NM_029219	75234.0	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-34271923-2	chr5	34271823	34272023	+	661.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001015039, intron 1 of 12)	B3|SINE|B2	16401.0	NM_001015039	231125.0	Mm.113388	NM_001015039	ENSMUSG00000037224	Zfyve28	9630058O20Rik|Gm146|mKIAA1643	zinc finger, FYVE domain containing 28	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6477189-3	chr19	6477096	6477296	+	721.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205234, intron 9 of 22)	intron (NM_001205234, intron 9 of 22)	58458.0	NM_001205234	18190.0	Mm.329616	NM_020253	ENSMUSG00000033768	Nrxn2	6430591O13Rik|mKIAA0921	neurexin II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-63399268-4	chr9	63399166	63399366	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027090)	promoter-TSS (NM_027090)	-22.0	NM_027090	69478.0	Mm.113942	NM_027090	ENSMUSG00000032403	2300009A05Rik	-	RIKEN cDNA 2300009A05 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-125189031-4	chr5	125188940	125189140	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT2B4|LTR|ERVL	-9826.0	NM_001253904	20602.0	Mm.278646	NM_011424	ENSMUSG00000029478	Ncor2	N-CoR|SMRT|SMRTe	nuclear receptor co-repressor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-86432590-2	chr1	86432490	86432690	+	845.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	6261.0	NM_027966	71863.0	Mm.179627	NM_027966	ENSMUSG00000036574	Tex44	1700019O17Rik	testis expressed 44	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91870393-4	chr16	91870282	91870482	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001110275, exon 29 of 29)	3' UTR (NM_001110275, exon 29 of 29)	61248.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-103969813-2	chr11	103969713	103969913	+	988.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007477, intron 2 of 4)	intron (NM_007477, intron 2 of 4)	2942.0	NM_007477	11841.0	Mm.5061	NM_007477	ENSMUSG00000062421	Arf2	-	ADP-ribosylation factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-90428540-4	chr6	90428521	90428721	+	905.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173775)	promoter-TSS (NM_173775)	-141.0	NM_173775	243538.0	Mm.386876	NM_173775	ENSMUSG00000048794	Cfap100	AW048498|C030041G11Rik|C230069K22Rik|Ccdc37	cilia and flagella associated protein 100	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-94753130-4	chr11	94753021	94753221	+	927.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8061.0	NM_001105561	217122.0	Mm.24063	NM_183153		Gm11545	A430060F13Rik|C86086	predicted gene 11545	protein-coding	2.62679121157228	2.55213603877048	2.06685962381757	2.15661532254519	3.02424902994293	1.96693187466271	2.48641920080956	2.02158210311523	0.197913093530249	0.812512215791913	0.998431161219273
Merged-chr16-3745735-1	chr16	3745635	3745835	+	555.0	f0_balb.idr	intron (NM_148924, intron 1 of 5)	intron (NM_148924, intron 1 of 5)	1636.0	NM_148924	74120.0	Mm.29081	NM_148924	ENSMUSG00000022529	Zfp263	1200014J04Rik|AI326880|AU020888|NT2|mFPM315	zinc finger protein 263	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56711396-2	chr17	56711296	56711496	+	680.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045519, exon 17 of 17)	non-coding (NR_045519, exon 17 of 17)	5525.0	NM_178926	106639.0	Mm.37290	NM_178926	ENSMUSG00000054723	Vmac	AI662250	vimentin-type intermediate filament associated coiled-coil protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-120011668-2	chr2	120011564	120011764	+	828.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355293, intron 4 of 30)	intron (NM_001355293, intron 4 of 30)	-5853.0	NR_106125	102466842.0		NR_106125	ENSMUSG00000098632	Mir7665	Gm27478|mmu-mir-7665	microRNA 7665	ncRNA	3.24210190815241	3.21566443726747	2.65938570012939	3.79750918532833	3.05763864408934	2.6231308431742	2.68054987621056	2.8379346138975	-0.840029000673542	0.192977846929682	0.671894430488195
Merged-chr18-4239669-4	chr18	4239566	4239766	+	964.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	73834.0	NM_026092	67328.0	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-13338687-4	chr8	13338585	13338785	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291766)	promoter-TSS (NM_001291766)	-66.0	NM_001291765	21781.0	Mm.925	NM_009361	ENSMUSG00000038482	Tfdp1	Dp1|Drtf1	transcription factor Dp 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-33813361-4	chr1	33813267	33813467	+	894.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359274, intron 2 of 13)	intron (NM_001359274, intron 2 of 13)	1228.0	NM_133817	98403.0	Mm.289103	NM_133817	ENSMUSG00000042197	Zfp451	4930515K21Rik|4933435G09Rik|AI596398|COASTER|Kiaa0576-hp|Znf451|mKIAA1702	zinc finger protein 451	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118346787-2	chr11	118346687	118346887	+	633.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011594, intron 1 of 4)	intron (NM_011594, intron 1 of 4)	-4253.0	NM_021440	58251.0	Mm.439815	NM_021440	ENSMUSG00000076433	Cep295nl	Ddc8|FS39|Kiaa1731nl	CEP295 N-terminal like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124900494-2	chr6	124900394	124900594	+	920.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11211.0	NM_008479	16768.0	Mm.4528	NM_008479	ENSMUSG00000030124	Lag3	CD223|LAG-3|Ly66	lymphocyte-activation gene 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-84467619-3	chr2	84467511	84467711	+	988.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355271, intron 2 of 8)	MLT1B|LTR|ERVL-MaLR	6563.0	NM_011576	21788.0	Mm.124316	NM_011576	ENSMUSG00000027082	Tfpi	A630013F22Rik|AW552122|EPI|LACI	tissue factor pathway inhibitor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-76194738-4	chr12	76194664	76194864	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-17505.0	NR_104386	13983.0	Mm.2561	NM_010157	ENSMUSG00000021055	Esr2	ER[b]|ERbeta|Estrb	estrogen receptor 2 (beta)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-110891745-2	chr12	110891645	110891845	+	744.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289510, intron 1 of 19)	B1F2|SINE|Alu	2481.0	NM_001081057	104859.0	Mm.35583	NM_175336	ENSMUSG00000021275	Tecpr2	4930573I19Rik|AI604920|mKIAA0297	tectonin beta-propeller repeat containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-37484368-4	chr2	37484269	37484469	+	914.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033960, intron 6 of 18)	MTC|LTR|ERVL-MaLR	32115.0	NM_001033960	227800.0	Mm.383192	NM_146121	ENSMUSG00000035437	Rabgap1	Gapcena|mKIAA4104	RAB GTPase activating protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-82867843-4	chr7	82867799	82867999	+	866.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175366, exon 1 of 2)	exon (NM_175366, exon 1 of 2)	566.0	NM_175366	108797.0	Mm.306789	NM_175366	ENSMUSG00000057706	Mex3b	4931439A04Rik|M-04814|Rkhd3|mKIAA2009	mex3 RNA binding family member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-109055628-3	chr9	109055478	109055678	+	895.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026381, intron 1 of 3)	intron (NM_026381, intron 1 of 3)	712.0	NM_026381	66940.0	Mm.196533	NM_025858	ENSMUSG00000025647	Shisa5	2310008D10Rik|6430628I05Rik|Scotin|mShisa5	shisa family member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65544419-2	chr9	65544319	65544519	+	848.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	35668.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-103341368-4	chr12	103341251	103341451	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023049, intron 2 of 9)	intron (NM_023049, intron 2 of 9)	14650.0	NM_023049	65256.0	Mm.27159	NM_023049	ENSMUSG00000021200	Asb2	1110008E15Rik	ankyrin repeat and SOCS box-containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76351718-4	chr15	76351623	76351823	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025340)	promoter-TSS (NM_025340)	429.0	NM_026859	68877.0	Mm.289680	NM_026859	ENSMUSG00000022553	Maf1	1110068E11Rik|AU042856	MAF1 homolog, negative regulator of RNA polymerase III	protein-coding	3.11020452993271	3.86197621925135	1.96219132619215	3.96081696612986	3.75495286317957	2.84482748614914	3.21937126178423	3.01747389582549	-0.267939311153293	0.6905149639425	0.996647510311426
Merged-chr7-35168203-2	chr7	35168103	35168303	+	680.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18182.0	NM_017394	53896.0	Mm.35567	NM_017394	ENSMUSG00000030495	Slc7a10	AL024237|Asc-1|D7Bwg0847e	solute carrier family 7 (cationic amino acid transporter, y+ system), member 10	protein-coding	-0.920746059108256	-0.900210136228289	-0.910868657888965	-0.914546390428102	-0.919816208124075	0.187426340199569	-0.909824961773136	-0.913900867410677	3.55267203040657	0.234146038776258	1
Merged-chr10-24638514-2	chr10	24638414	24638614	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008813, exon 25 of 25)	3' UTR (NM_008813, exon 25 of 25)	43072.0	NM_010217	14219.0	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-59179259-4	chr17	59179164	59179364	+	982.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MEi|LINE|L1	-165942.0	NM_026497	67993.0	Mm.36507	NM_026497	ENSMUSG00000024228	Nudt12	0610016O18Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-25537257-2	chr15	25537157	25537357	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-85293.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-76586128-1	chr12	76586028	76586228	+	643.0	f0_balb.idr	intron (NM_013675, intron 33 of 35)	intron (NM_013675, intron 33 of 35)	-38203.0	NR_046044	100504549.0	Mm.440349	NR_046044	ENSMUSG00000112388	AI463170	-	expressed sequence AI463170	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-76536924-4	chr12	76536788	76536988	+	907.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153804, intron 1 of 18)	intron (NM_153804, intron 1 of 18)	3328.0	NM_153804	263406.0	Mm.291854	NM_153804	ENSMUSG00000052609	Plekhg3	BC030417	pleckstrin homology domain containing, family G (with RhoGef domain) member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-83757096-4	chr8	83756992	83757192	+	856.033325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15781.0	NM_001163031	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	2.276127915917	1.25723507691598	1.69060278081767	2.57358857934705	2.4578777929426	1.26406492810317	1.88180676246662	2.80037382976859	0.414006554292489	0.694892790419075	0.997870549741095
Merged-chr10-99214615-2	chr10	99214515	99214715	+	668.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F1|SINE|Alu	-48616.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-113190425-2	chr12	113190325	113190525	+	744.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_153776)	TTS (NM_153776)	4522.0	NM_153776	69195.0	Mm.313244	NM_153776	ENSMUSG00000049036	Tmem121	2410008J05Rik|Hole	transmembrane protein 121	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-46434634-4	chr18	46434536	46434736	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	31180.0	NR_045438	72076.0	Mm.82766	NM_028086		Mospd4	2010013H21Rik	motile sperm domain containing 4	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-26805082-4	chr11	26804988	26805188	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19980.0	NR_002890	654472.0	Mm.347777	NR_002890		Gm12070	-	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-6565979-3	chr2	6565908	6566108	+	931.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110232, intron 11 of 15)	intron (NM_001110232, intron 11 of 15)	155654.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-43531033-3	chr7	43530926	43531126	+	740.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111058, intron 3 of 6)	L1MB7|LINE|L1	2145.0	NM_001111058	12489.0	Mm.140157	NM_021293	ENSMUSG00000004609	Cd33	Siglec-3|gp67	CD33 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-59228658-4	chr7	59228557	59228757	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173010)	promoter-TSS (NM_173010)	-93.0	NM_001033962	22215.0	Mm.9002	NM_011668	ENSMUSG00000025326	Ube3a	4732496B02|5830462N02Rik|A130086L21Rik|Hpve6a	ubiquitin protein ligase E3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-24417848-4	chr19	24417737	24417937	+	988.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008846, intron 3 of 14)	intron (NM_008846, intron 3 of 14)	59637.0	NM_026520	68034.0	Mm.440181	NM_026520	ENSMUSG00000074922	Fam122a	2410124L17Rik|2900009I07Rik|Gm9849	family with sequence similarity 122, member A	protein-coding	3.62791889417691	3.63450578489914	2.44766110237404	3.75579822254417	2.4175578621352	3.88343420634597	3.8871580384524	3.26546118571584	0.0303208094208322	0.961409092313733	0.998431161219273
Merged-chr7-25740132-3	chr7	25740064	25740264	+	978.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178089, intron 7 of 7)	MIR|SINE|MIR	14595.0	NM_144922	232989.0	Mm.254223	NM_144922	ENSMUSG00000040725	Hnrnpul1	E130317O14Rik|E1B-AP5|E1BAP5|Hnrnpul|Hnrpul1	heterogeneous nuclear ribonucleoprotein U-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-123260381-3	chr6	123260303	123260503	+	957.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1704.0	NM_001163161	17474.0	Mm.441101	NM_010819	ENSMUSG00000030144	Clec4d	Clecsf8|Mpcl|mcl	C-type lectin domain family 4, member d	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-12464882-3	chr19	12464784	12464984	+	880.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010821, exon 2 of 2)	3' UTR (NM_010821, exon 2 of 2)	4105.0	NM_010821	17476.0	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	3.40523097421493	2.7443390809903	2.65330036419364	2.57964292767215	2.6690521675815	2.76425681354578	2.06842387970525	2.80159062134513	-0.569848780021373	0.431838244573734	0.904679012727573
Merged-chr2-166294329-4	chr2	166294222	166294422	+	976.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033467, intron 2 of 2)	intron (NR_033467, intron 2 of 2)	20414.0	NR_033467	670775.0	Mm.384326	NR_033467	ENSMUSG00000084840	Gm11468	-	predicted gene 11468	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-86967881-3	chr17	86967790	86967990	+	945.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145491, intron 2 of 4)	intron (NM_145491, intron 2 of 4)	4779.0	NM_145491	104215.0	Mm.826	NM_145491	ENSMUSG00000024143	Rhoq	Arhq|TC10A|Tc10	ras homolog family member Q	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70906134-5	chr8	70906043	70906243	+	864.6742550000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173013, intron 1 of 6)	CpG	169.0	NM_173013	270058.0	Mm.248559	NM_173013	ENSMUSG00000019261	Map1s	6430517J16Rik|Bpy2ip1|Map8|Mtap1s|VCY2IP1	microtubule-associated protein 1S	protein-coding	2.15334065175881	2.01085101310067	2.43321665749204	1.55259185333339	1.82183660825389	2.42855029933342	2.34872368755976	2.37761139324971	0.460150981339702	0.607726371573342	0.974576632476413
Merged-chr12-99739150-4	chr12	99739052	99739252	+	987.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030172, intron 5 of 5)	intron (NM_030172, intron 5 of 5)	-111178.0	NR_045288	73457.0	Mm.383439	NR_045288	ENSMUSG00000100211	1700064M15Rik	-	RIKEN cDNA 1700064M15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-20845890-4	chr14	20845793	20845993	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9231.0	NM_008873	18792.0	Mm.4183	NM_008873	ENSMUSG00000021822	Plau	u-PA|uPA	plasminogen activator, urokinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-76053321-1	chr16	76053221	76053421	+	705.0	f0_balb.idr	Intergenic	L2c|LINE|L2	52537.0	NR_155447	102632240.0	Mm.417237	NR_155447	ENSMUSG00000087214	Gm15555	-	predicted gene 15555	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-113649003-4	chr5	113648908	113649108	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008153, intron 1 of 2)	intron (NM_008153, intron 1 of 2)	1382.0	NM_008153	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-60771546-2	chr18	60771446	60771646	+	833.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3050.0	NM_020600	20044.0	Mm.43778	NM_020600	ENSMUSG00000024608	Rps14	2600014J02Rik|AL023078	ribosomal protein S14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-74648160-4	chr11	74648065	74648265	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1330.0	NM_001081158	74148.0	Mm.214574	NM_001081158	ENSMUSG00000020741	Cluh	1300001I01Rik|Kiaa0664|mKIAA0664	clustered mitochondria (cluA/CLU1) homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-14863619-1	chr4	14863519	14863719	+	989.0	f0_balb.idr	promoter-TSS (NM_028264)	promoter-TSS (NM_028264)	-600.0	NM_028264	72519.0	Mm.279158	NM_028264	ENSMUSG00000028221	Tmem55a	2610319K07Rik|AI315591|AV001360|Pip4p2	transmembrane protein 55A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-52563793-4	chr18	52563698	52563898	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33931.0	NM_001286182	16948.0	Mm.172	NM_010728	ENSMUSG00000024529	Lox	AI893619|TSC-160|rrg	lysyl oxidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-40493561-2	chr12	40493461	40493661	+	906.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	47508.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126484376-2	chr7	126484276	126484476	+	744.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-2979.0	NM_172745	233870.0	Mm.197829	NM_172745	ENSMUSG00000073838	Tufm	2300002G02Rik|C76308|C76389|EF-TuMT|EFTU	Tu translation elongation factor, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-9980424-2	chr19	9980324	9980524	+	785.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_073181)	promoter-TSS (NR_073181)	-176.0	NR_073181	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-21909690-4	chr17	21909589	21909789	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001256493, exon 1 of 5)	5' UTR (NM_001256493, exon 1 of 5)	237.0	NM_001256493	70081.0	Mm.245648	NM_001256493	ENSMUSG00000078546	Zfp995	2210404O09Rik	zinc finger protein 995	protein-coding	4.608830947144	2.79677172972077	4.0599709783841	3.75454522401295	3.99579733861107	4.84669167901748	4.02848782368332	1.70464515161576	0.10527584579308	0.922326914366698	0.998431161219273
Merged-chr5-17878652-3	chr5	17878527	17878727	+	925.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159558, intron 1 of 15)	intron (NM_001159558, intron 1 of 15)	10332.0	NM_001159558	12491.0	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 molecule	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-31609846-5	chr18	31609654	31609854	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026165, exon 1 of 8)	exon (NM_026165, exon 1 of 8)	176.0	NM_026165	67453.0	Mm.23896	NM_026165	ENSMUSG00000024259	Slc25a46	1200007B05Rik|AI325987	solute carrier family 25, member 46	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124002512-2	chr5	124002412	124002612	+	812.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_145070, exon 32 of 32)	3' UTR (NM_145070, exon 32 of 32)	5660.0	NR_105999	102465625.0		NR_105999	ENSMUSG00000098454	Mir7032	Gm27309|mmu-mir-7032	microRNA 7032	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-98153068-4	chr15	98152964	98153164	+	924.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170711, intron 1 of 3)	intron (NM_001170711, intron 1 of 3)	-7362.0	NM_001170710	78541.0	Mm.200766	NM_030121	ENSMUSG00000048175	Asb8	4930539L19Rik|AI788835|C430011H06Rik	ankyrin repeat and SOCS box-containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-94614143-4	chr9	94614145	94614345	+	811.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-55647.0	NM_177909	331004.0	Mm.326125	NM_177909	ENSMUSG00000031129	Slc9a9	5730527A11Rik|9930105B05|AI854429|Nhe9	solute carrier family 9 (sodium/hydrogen exchanger), member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-78710140-3	chr11	78710053	78710253	+	666.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12728.0	NM_008702	18099.0	Mm.9001	NM_008702	ENSMUSG00000017376	Nlk	AI194375	nemo like kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-54710708-1	chr12	54710608	54710808	+	704.0	f0_balb.idr	Intergenic	Intergenic	-14814.0	NM_025456	66266.0	Mm.156440	NM_025456	ENSMUSG00000054302	Eapp	1810011O16Rik	E2F-associated phosphoprotein	protein-coding	1.6928932136976	1.0438992905976	1.02468235185539	2.15267206946697	1.59930771717772	1.80145427368142	1.96839595938085	1.4011371693178	0.371775353978609	0.756454144617975	0.998431161219273
Merged-chr11-117476168-3	chr11	117476076	117476276	+	739.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8192.0	NR_130966	432615.0	Mm.126359	NR_130966	ENSMUSG00000069588	Gm11733	-	predicted gene 11733	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102394633-4	chr12	102394535	102394735	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011175, intron 13 of 13)	intron (NM_011175, intron 13 of 13)	45178.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-77563851-2	chr10	77563751	77563951	+	806.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008404, intron 14 of 15)	intron (NM_008404, intron 14 of 15)	-17804.0	NM_145925	108705.0	Mm.28853	NM_145925	ENSMUSG00000009291	Pttg1ip	1810010L20Rik|AI314311|AU018448|C79540|PBF	pituitary tumor-transforming 1 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-111807230-3	chr13	111807123	111807323	+	923.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011945, intron 1 of 19)	intron (NM_011945, intron 1 of 19)	1770.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	1.93985891457232	0.899458662377635	2.22472083687198	0.855215209997735	1.39977783230563	1.1856154203167	2.54607457422567	0.85870366918066	0.153963189574063	0.90827840896311	0.998431161219273
Merged-chr4-139598637-3	chr4	139598530	139598730	+	779.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205173, intron 1 of 8)	MLTR14|LTR|ERV1	23910.0	NM_001205173	212632.0	Mm.30464	NM_183148	ENSMUSG00000041025	Iffo2	C79267	intermediate filament family orphan 2	protein-coding	2.46451554233498	2.46412057227199	1.98145754342574	2.07198334071286	2.40189051186464	2.87220962363309	1.36205062902622	2.08248347522601	0.0804730079148131	0.930072854892945	0.998431161219273
Merged-chr17-27012146-4	chr17	27012051	27012251	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-5884.0	NM_001251881	70772.0	Mm.440437	NM_027544	ENSMUSG00000048731	Ggnbp1	0610031G08Rik|mdf	gametogenetin binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-128957379-4	chr4	128957267	128957467	+	917.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301841, intron 2 of 8)	intron (NM_001301841, intron 2 of 8)	5088.0	NM_172875	242669.0	Mm.215814	NM_172875	ENSMUSG00000028789	Azin2	4933429I20Rik|Adc|Azi2|B930082O19|ODC-p|Odcp	antizyme inhibitor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111915008-4	chr12	111914910	111915110	+	964.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-6955.0	NM_011625	21981.0	Mm.313076	NM_011625	ENSMUSG00000021285	Ppp1r13b	AI449786|ASPP1|AW545810|Tp53bp2|Trp53bp2|p85	protein phosphatase 1, regulatory (inhibitor) subunit 13B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153399541-2	chr2	153399441	153399641	+	750.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001039939, exon 12 of 12)	exon (NM_001039939, exon 12 of 12)	44938.0	NM_001001986	329540.0	Mm.50600	NM_001001986	ENSMUSG00000061411	Nol4l	4931410H15|8430427H17Rik|AI429157|Gm1636	nucleolar protein 4-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-27645624-2	chr10	27645524	27645724	+	592.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-28682.0	NM_008481	16773.0	Mm.256087	NM_008481	ENSMUSG00000019899	Lama2	5830440B04|dy|mKIAA4087|mer|merosin	laminin, alpha 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-136021793-4	chr4	136021695	136021895	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013736)	promoter-TSS (NM_013736)	-146.0	NM_013736	27224.0	Mm.27663	NM_013736	ENSMUSG00000028668	Eloa	110kDa|AA408125|Tceb3|Tceb3a	elongin A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-58631313-2	chr15	58631213	58631413	+	811.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	192114.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-161507832-2	chr1	161507736	161507936	+	848.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13179.0	NM_183391	240873.0	Mm.276823	NM_183391	ENSMUSG00000066755	Tnfsf18	Gitrl|Tnlg2a	tumor necrosis factor (ligand) superfamily, member 18	protein-coding	0.878669782372135	1.57329667137807	0.464616562847304	0.807777923789004	0.617084599839997	0.477379826582162	0.466929830304707	1.07310368575718	-1.51338026785824	0.355883769137092	0.853664850644233
Merged-chr4-40285803-3	chr4	40285679	40285879	+	627.200012	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6358.0	NM_001033305	230075.0	Mm.1103	NM_001033305	ENSMUSG00000071014	Ndufb6	CI-B17|Gm137	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-102256511-1	chr7	102256411	102256611	+	601.0	f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-6393.0	NM_019566	56212.0	Mm.259795	NM_019566	ENSMUSG00000073982	Rhog	2810426G09Rik|Arhg|Sid10750	ras homolog family member G	protein-coding	1.88501513333508	1.62823303856903	2.15189963305039	0.820832684373505	1.54966066029843	1.11312184010733	0.839736492045242	0.823435891225464	-2.02479024815231	0.140665589029164	0.585331469539392
Merged-chr13-96512116-2	chr13	96512016	96512216	+	909.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_144624, intron 2 of 10)	intron (NR_144624, intron 2 of 10)	7071.0	NR_144623	27015.0	Mm.89926	NM_012048	ENSMUSG00000021668	Polk	DINP|Dinb1	polymerase (DNA directed), kappa	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-149409547-2	chr6	149409447	149409647	+	894.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_009753, exon 1 of 9)	exon (NM_009753, exon 1 of 9)	563.0	NM_009753	12121.0	Mm.177181	NM_009753	ENSMUSG00000003452	Bicd1	B830009D06Rik|bic-D 1	BICD cargo adaptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-83607854-2	chr7	83607754	83607954	+	748.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177695, intron 12 of 22)	intron (NM_177695, intron 12 of 22)	22923.0	NM_177695	233424.0	Mm.486619	NM_177695	ENSMUSG00000038540	Tmc3	9030203A06	transmembrane channel-like gene family 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-35055796-4	chr9	35055675	35055875	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009178, intron 1 of 10)	intron (NM_009178, intron 1 of 10)	-60953.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	5.02895037684858	4.24533196583933	4.96921660761692	5.11345162589012	4.49924138275251	5.29674179227295	4.75669767618262	4.32106420497793	-0.153228855168995	0.680303211614562	0.995506882643648
Merged-chr19-58983765-2	chr19	58983665	58983865	+	624.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175172, intron 14 of 14)	B4A|SINE|B4	-40093.0	NM_001327998	73442.0	Mm.39739	NM_175199	ENSMUSG00000025092	Hspa12a	1700063D12Rik|AI118035|AI840429|AW048913|AW556406|D5Mgi40|Gm19925|mKIAA0417	heat shock protein 12A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-58982598-2	chr15	58982498	58982698	+	756.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144800, intron 3 of 14)	intron (NM_144800, intron 3 of 14)	48788.0	NM_023172	66218.0	Mm.322294	NM_023172	ENSMUSG00000022354	Ndufb9	1190008J14Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46140079-3	chr8	46139972	46140172	+	853.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15926.0	NM_207213	102141.0	Mm.267258	NM_207213	ENSMUSG00000038291	Snx25	AI661919|Gm1699|Gm173|Sbbi31	sorting nexin 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70667512-4	chr11	70667403	70667603	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167669, intron 1 of 6)	intron (NM_001167669, intron 1 of 6)	1913.0	NM_172561	216873.0	Mm.432524	NM_172561	ENSMUSG00000018287	Spag7	5730443G10|ACRP|FSA-1|Fsa1l	sperm associated antigen 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-102192557-4	chr15	102192457	102192657	+	981.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359128, intron 3 of 15)	L2|LINE|L2	-3514.0	NM_144942	246277.0	Mm.296382	NM_144942	ENSMUSG00000023044	Csad	Csd	cysteine sulfinic acid decarboxylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-84340830-2	chr10	84340730	84340930	+	717.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	99641.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81000457-2	chr15	81000357	81000557	+	564.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357669, intron 1 of 20)	intron (NM_001357669, intron 1 of 20)	22692.0	NM_134091	105835.0	Mm.274943	NM_134091	ENSMUSG00000042303	Sgsm3	1810012I01Rik|AI428557|BB175482|Cip85|R75178|RUSC3|Rutbc3	small G protein signaling modulator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91761985-4	chr16	91761903	91762103	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110276, intron 1 of 15)	intron (NM_001110276, intron 1 of 15)	32632.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-43281862-2	chr15	43281762	43281962	+	778.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008388, intron 1 of 12)	intron (NM_008388, intron 1 of 12)	874.0	NM_008388	16341.0	Mm.289992	NM_008388	ENSMUSG00000022336	Eif3e	48kDa|Eif3s6|Int6|eIF3-p46|eIF3-p48	eukaryotic translation initiation factor 3, subunit E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-149307822-4	chr4	149307703	149307903	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290995)	promoter-TSS (NM_001290995)	-70.0	NM_001290995	16561.0	Mm.402393	NM_008441	ENSMUSG00000063077	Kif1b	A530096N05Rik|AI448212|AI506502|D4Mil1e|KIF1Bp130|KIF1Bp204	kinesin family member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-96116298-1	chr6	96116198	96116398	+	797.0	f0_balb.idr	intron (NM_182808, intron 2 of 4)	intron (NM_182808, intron 2 of 4)	3144.0	NM_182808	320265.0	Mm.489890	NM_182808	ENSMUSG00000059187	Fam19a1	C630007B19Rik|FAM19A1 TAFA-1|TAFA1|Tafa-1	family with sequence similarity 19, member A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-32952578-4	chr19	32952473	32952673	+	882.0750119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	194996.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-82924089-2	chr11	82923989	82924189	+	725.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178680, intron 9 of 19)	B2_Mm1t|SINE|B2	12836.0	NM_178680	217012.0	Mm.295205	NM_178680	ENSMUSG00000018845	Unc45b	AA445617|Cmya4|D230041A13Rik|Unc45	unc-45 myosin chaperone B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-145308424-4	chr7	145308327	145308527	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_145379, exon 3 of 3)	exon (NM_145379, exon 3 of 3)	-6408.0	NM_203490	211578.0	Mm.370299	NM_203490	ENSMUSG00000051207	Mrgprd	Gm499|Mgrd|MrgD|TGR7	MAS-related GPR, member D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-107315175-1	chr4	107315075	107315275	+	759.5	f0_c57.idr	intron (NM_001205156, intron 1 of 8)	L1MEc|LINE|L1	812.0	NM_001205156	230584.0	Mm.29118	NM_145550	ENSMUSG00000057375	Yipf1	C030002N13Rik	Yip1 domain family, member 1	protein-coding	3.33601512054908	3.59053046654112	3.40642916801913	2.55400997300236	2.15066775064105	2.74399628895249	2.8994793868293	2.91401842162567	-1.00899713307197	0.130971100343811	0.566336454410263
Merged-chr1-191110072-4	chr1	191109967	191110167	+	975.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11653.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	4.0079504307009	4.36485340234736	5.59365291742288	5.18592910623933	4.74619462431218	5.0989214973064	4.04111015308985	4.46291444890204	-0.355839449696863	0.407406060581118	0.891845785649541
Merged-chr18-60730746-2	chr18	60730629	60730829	+	630.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001348146, intron 1 of 6)	intron (NM_001348146, intron 1 of 6)	2412.0	NM_001348102	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	1.27977164979674	1.33100357270397	1.82355332652599	0.703855241343115	0.686535184727936	0.978005644200813	1.75214125995899	0.705962407430702	-0.800461209953255	0.588677253996667	0.968677383210937
Merged-chr8-71607236-2	chr8	71607138	71607338	+	703.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166213, intron 14 of 14)	intron (NM_001166213, intron 14 of 14)	-3786.0	NM_146211	234407.0	Mm.240885	NM_146211	ENSMUSG00000034807	Colgalt1	2810024B22Rik|Glt25d1	collagen beta(1-O)galactosyltransferase 1	protein-coding	0.820870447305218	0.536718201539669	0.525247119410497	1.13821074745343	1.34937752324354	0.539278609941423	0.527793311430311	1.60395867766172	1.40612939882688	0.403388219437539	0.888785587454204
Merged-chr5-142447805-2	chr5	142447705	142447905	+	577.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_199068, intron 2 of 8)	intron (NM_199068, intron 2 of 8)	-16126.0	NM_172725	231855.0	Mm.78250	NM_172725	ENSMUSG00000039623	Ap5z1	C330006K01Rik	adaptor-related protein complex 5, zeta 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-106993651-2	chr14	106993551	106993751	+	887.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2B2|LINE|L1	-507131.0	NR_045938	73631.0	Mm.48862	NR_045938	ENSMUSG00000099794	1700128A07Rik	-	RIKEN cDNA 1700128A07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-75343421-3	chr16	75343337	75343537	+	710.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	242624.0	NM_001252513	320355.0	Mm.99517	NM_177142	ENSMUSG00000032948	Lipi	D930038D03Rik|lpd1	lipase, member I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-25097330-4	chr12	25097225	25097425	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1233.0	NM_010496	15902.0	Mm.34871	NM_010496	ENSMUSG00000020644	Id2	AI255428|C78922|Idb2|bHLHb26	inhibitor of DNA binding 2	protein-coding	2.05080635935083	1.10011685091721	1.47018782925747	1.4340716380891	1.73522365151259	1.68722960523849	1.98836001035957	1.58495805058247	0.574657438572227	0.606055925863444	0.974576632476413
Merged-chr13-21181012-4	chr13	21180920	21181120	+	997.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009054, intron 1 of 7)	CpG	1089.0	NM_009054	19720.0	Mm.314056	NM_009054	ENSMUSG00000021326	Trim27	AW538890|Gm19403|Rfp	tripartite motif-containing 27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-82144445-2	chr15	82144345	82144545	+	590.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2824.0	NM_033218	20788.0	Mm.38016	NM_033218	ENSMUSG00000022463	Srebf2	AI608257|SREBP-2|SREBP2|SREBP2gc|bHLHd2|lop13|nuc	sterol regulatory element binding factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122733911-2	chr5	122733811	122734011	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_145358, exon 16 of 16)	3' UTR (NM_145358, exon 16 of 16)	26367.0	NM_001310718	18438.0	Mm.290884	NM_011026	ENSMUSG00000029470	P2rx4	AI504491|AW555605|D5Ertd444e|P2X4	purinergic receptor P2X, ligand-gated ion channel 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167841847-2	chr2	167841747	167841947	+	666.400024	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-90480.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128413626-2	chr10	128413561	128413761	+	590.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_026259, intron 1 of 7)	intron (NM_026259, intron 1 of 7)	2045.0	NM_026259	67588.0	Mm.294120	NM_026259	ENSMUSG00000025373	Rnf41	2210404G21Rik|4930511A05Rik|4933415P08Rik|D10Ertd722e|FLRF|Nrdp1	ring finger protein 41	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-100163943-4	chr6	100163864	100164064	+	954.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	123394.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-13962433-2	chr14	13962331	13962531	+	648.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359901)	promoter-TSS (NM_001359901)	-579.0	NM_001359901	66231.0	Mm.295875	NM_025435	ENSMUSG00000053453	Thoc7	Nif3l1bp1	THO complex 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3750228-2	chr4	3750128	3750328	+	551.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 8 of 12)	(TTCA)n|Simple_repeat|Simple_repeat	35264.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	2.07082093440032	0.885367576007081	0.86557309170371	1.78317340992564	2.09069570956172	0.889746326898746	0.869992398648108	1.79394540000094	0.0367102945365916	0.979700507803238	0.998431161219273
Merged-chr15-88819470-4	chr15	88819339	88819539	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145477)	promoter-TSS (NM_145477)	-121.0	NM_145477	223774.0	Mm.41512	NM_145477	ENSMUSG00000035845	Alg12	ECM39	asparagine-linked glycosylation 12 (alpha-1,6-mannosyltransferase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-66103925-1	chr17	66103825	66104025	+	617.0	f1_c57bl6.idr	Intergenic	(TCC)n|Simple_repeat|Simple_repeat	-2366.0	NM_028388	72900.0	Mm.2206	NM_028388	ENSMUSG00000024099	Ndufv2	2900010C23Rik	NADH dehydrogenase (ubiquinone) flavoprotein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-30257800-1	chr12	30257700	30257900	+	599.0	f0_balb.idr	intron (NM_001324521, intron 8 of 15)	intron (NM_001324521, intron 8 of 15)	115575.0	NM_172951	268534.0	Mm.279765	NM_172951	ENSMUSG00000020672	Sntg2	2210008K22Rik|9530013L23|BB121248|G2syn|Syn5	syntrophin, gamma 2	protein-coding	1.26981400361538	1.56704327139175	0.668645864986272	0.660051335912622	1.07653438605473	1.23038472841924	0.671090007126092	1.13922965861245	-0.290412012965366	0.849087732270312	0.998431161219273
Merged-chr10-125317570-4	chr10	125317467	125317667	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358496, intron 1 of 5)	intron (NM_001358496, intron 1 of 5)	-8751.0	NM_001358915	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-38965655-4	chr6	38965560	38965760	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 3 of 12)	MTEa|LTR|ERVL-MaLR	46674.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-139248323-2	chr4	139248223	139248423	+	880.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037761, intron 2 of 9)	intron (NM_001037761, intron 2 of 9)	54212.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-83910986-6	chr10	83910910	83911110	+	979.984131	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	188145.0	NM_001145198	69784.0	Mm.271188	NM_001145198	ENSMUSG00000087651	1500009L16Rik	2700050C19Rik|OCC-1	RIKEN cDNA 1500009L16 gene	protein-coding	-1.36173557382786	-1.32815474690469	-1.48755935378017	-1.49538385882153	-1.35790290053399	-1.47596967414592	-1.48540299606242	-1.49398327616012	-0.636274386748411	0.844065881334306	1
Merged-chr12-24974214-1	chr12	24974114	24974314	+	572.0	f1_c57bl6.idr	promoter-TSS (NM_001081378)	promoter-TSS (NM_001081378)	-718.0	NM_001081378	77480.0	Mm.250641	NM_001081378	ENSMUSG00000036333	Kidins220	3110039L19Rik|AI194387|AI316525|C330002I19Rik|mKIAA1250	kinase D-interacting substrate 220	protein-coding	-1.09215782419892	-1.20594174989806	-1.21609547624201	-1.06799521181591	-1.23063571627698	-1.20374139504204	-1.21379689516108	-0.927787428083876	0.106594341804705	0.973106574439182	1
Merged-chr17-43581358-5	chr17	43581305	43581505	+	818.34668	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013737, intron 1 of 11)	intron (NM_013737, intron 1 of 11)	10104.0	NR_045445	73504.0	Mm.9277	NR_045444	ENSMUSG00000090307	1700071M16Rik	-	RIKEN cDNA 1700071M16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26502023-4	chr17	26501909	26502109	+	976.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	6463.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	0.817171680239046	0.986149975899062	0.319796004274674	1.1699408748945	0.304235974778452	0.543397653791734	0.32162270334681	0.314503146167929	-3.57129780060066	0.0571171702537438	1
Merged-chr10-24142397-2	chr10	24142297	24142497	+	898.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6892.0	NM_001358563	53331.0	Mm.248042	NM_016797	ENSMUSG00000019998	Stx7	AI315064|AI317144|AW107239|Syn7	syntaxin 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-39731506-4	chr10	39731405	39731605	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011264)	promoter-TSS (NM_011264)	502.0	NR_038037	327744.0	Mm.295265	NM_183198	ENSMUSG00000087177	E130307A14Rik	-	RIKEN cDNA E130307A14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-57660178-4	chr18	57660162	57660362	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311063, intron 5 of 5)	intron (NM_001311063, intron 5 of 5)	-21677.0	NR_045360	70157.0	Mm.490532	NR_045360		2210409D07Rik	-	RIKEN cDNA 2210409D07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-87184991-4	chr1	87184890	87185090	+	895.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027084, intron 4 of 12)	intron (NM_027084, intron 4 of 12)	1676.0	NM_027084	69453.0	Mm.84618	NM_027084	ENSMUSG00000036480	Prss56	1700027L20Rik	protease, serine 56	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-120883606-2	chr10	120883579	120883779	+	964.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_177092, intron 1 of 6)	GA-rich|Low_complexity|Low_complexity	15292.0	NM_177092	320183.0	Mm.169755	NM_177092	ENSMUSG00000051236	Msrb3	D430026P16Rik|I-8-23|MsrB2	methionine sulfoxide reductase B3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-17181501-4	chr16	17181367	17181567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009456, intron 1 of 3)	L3|LINE|CR1	20025.0	NM_009456	22195.0	Mm.3074	NM_009456	ENSMUSG00000038965	Ube2l3	C79827|UbcM4|Ubce7	ubiquitin-conjugating enzyme E2L 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-28337662-1	chr19	28337562	28337762	+	643.0	f0_balb.idr	intron (NM_175459, intron 6 of 10)	intron (NM_175459, intron 6 of 10)	-326496.0	NM_001166414	19726.0	Mm.313321	NM_011265	ENSMUSG00000040929	Rfx3	C230093O12Rik|MRFX3	regulatory factor X, 3 (influences HLA class II expression)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-121757552-1	chr9	121757452	121757652	+	547.0	f1_balb.idr	TTS (NM_010918)	TTS (NM_010918)	2391.0	NR_033503	320301.0	Mm.373883	NR_033503		E530011L22Rik	-	RIKEN cDNA E530011L22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-108518200-4	chr9	108518103	108518303	+	966.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175143, intron 1 of 9)	intron (NM_175143, intron 1 of 9)	1116.0	NM_175143	69232.0	Mm.335449	NM_175143	ENSMUSG00000006673	Qrich1	2610028H07Rik|b2b2404Clo	glutamine-rich 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52268503-4	chr13	52268405	52268605	+	942.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	171764.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-91676828-2	chr6	91676728	91676928	+	714.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7239.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-62105436-2	chr10	62105336	62105536	+	658.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5532.0	NM_001358253	69894.0	Mm.294126	NM_027251	ENSMUSG00000020083	Fam241b	2010107G23Rik|AA545165	family with sequence similarity 241, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83675912-4	chr11	83675813	83676013	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13329.0	NM_013652	20303.0	Mm.244263	NM_013652	ENSMUSG00000018930	Ccl4	AT744.1|Act-2|MIP-1B|Mip1b|Scya4	chemokine (C-C motif) ligand 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-16209778-3	chr19	16209676	16209876	+	877.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008139, intron 1 of 6)	intron (NM_008139, intron 1 of 6)	45678.0	NR_033228	595139.0	Mm.405662	NR_033228		E030024N20Rik	9030417F11Rik|Ppia-ps8	peptidylprolyl isomerase A pseudogene 8	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96579942-3	chr3	96579834	96580034	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027241, intron 6 of 7)	intron (NM_027241, intron 6 of 7)	-13133.0	NR_040409	100038464.0	Mm.475126	NR_040409	ENSMUSG00000074398	Gm15441	-	predicted gene 15441	ncRNA	3.0581742090387	2.83072802450385	3.31467133591982	3.14462270885532	2.92685569603264	1.6445118286048	3.83637731036769	2.39119893475547	-0.23543324146472	0.755302079416423	0.998431161219273
Merged-chr1-91460860-2	chr1	91460760	91460960	+	624.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1532.0	NM_011066	18627.0	Mm.482463	NM_011066	ENSMUSG00000055866	Per2	mKIAA0347|mPer2	period circadian clock 2	protein-coding	-1.84456824087626	-1.81369603968745	-1.82303204814395	-1.83070092346192	-1.84240106943552	-1.51787681909439	-1.82091858046888	-1.82932819844659	1.64481029852639	0.639921510788462	1
Merged-chr8-95136025-3	chr8	95135938	95136138	+	739.277771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010631, intron 2 of 19)	(TTTTG)n|Simple_repeat|Simple_repeat	6502.0	NM_010631	16582.0	Mm.378951	NM_010631	ENSMUSG00000031788	Kifc3	AI325457|BB123200	kinesin family member C3	protein-coding	2.30014605433681	3.19550320009505	2.64239972644532	3.17344346745896	3.66943703859753	2.75566154066428	3.01609739363574	3.01933158094578	0.52087015883126	0.435208898801778	0.907374252981418
Merged-chr13-49186900-2	chr13	49186800	49187000	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013610)	promoter-TSS (NM_013610)	-647.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-8719471-2	chr19	8719371	8719571	+	719.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161413, intron 1 of 9)	B1_Mm|SINE|Alu	3898.0	NM_001161413	17254.0	Mm.4114	NM_008577	ENSMUSG00000010095	Slc3a2	4F2|4F2HC|AI314110|Cd98|Ly-10|Ly-m10|Ly10|Mdu1|Mgp-2hc|NACAE	solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-60998277-2	chr9	60998177	60998377	+	883.125	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18792.0	NR_040767	330956.0	Mm.207985	NR_040767	ENSMUSG00000111290	Gm5122	A430102L10	predicted gene 5122	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10602649-2	chr19	10602549	10602749	+	667.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145496, intron 1 of 16)	intron (NM_145496, intron 1 of 16)	1609.0	NM_145496	225913.0	Mm.374868	NM_145496	ENSMUSG00000034371	Tkfc	BC021917|Dak	triokinase, FMN cyclase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-107318745-4	chr11	107318630	107318830	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 4 of 9)	B1_Mur1|SINE|Alu	-129349.0	NM_001161329	68979.0	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94370203-2	chr10	94370103	94370303	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 1 of 4)	MTD|LTR|ERVL-MaLR	58254.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19803903-4	chr7	19803799	19803999	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7090.0	NM_023224	80794.0	Mm.81698	NM_023224	ENSMUSG00000040525	Cblc	2310076I21Rik|2310079L19Rik|Cbl3	Casitas B-lineage lymphoma c	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-27663254-2	chr15	27663154	27663354	+	581.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001242424, intron 4 of 8)	(TG)n|Simple_repeat|Simple_repeat	18288.0	NM_001242424	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34655799-4	chr17	34655713	34655913	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_017406)	TTS (NM_017406)	8667.0	NM_017406	12915.0	Mm.4068	NM_017406	ENSMUSG00000015461	Atf6b	AA617266|ATF6beta|Creb-rp|Crebl1	activating transcription factor 6 beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72396116-4	chr6	72396015	72396215	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5448.0	NM_016794	22320.0	Mm.1838	NM_016794	ENSMUSG00000050732	Vamp8	AU041171|Edb|endobrevin	vesicle-associated membrane protein 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-25707780-4	chr14	25707645	25707845	+	911.9833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6463.0	NR_028021	68173.0	Mm.444727	NM_026595		Ppifos	4930520F12Rik|Ppifs	peptidylprolyl isomerase F, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-103757120-2	chr5	103757020	103757220	+	726.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080798, intron 1 of 19)	intron (NM_001080798, intron 1 of 19)	2547.0	NM_001080798	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-53259513-2	chr18	53259413	53259613	+	562.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029394, intron 1 of 6)	ORR1A3|LTR|ERVL-MaLR	13851.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45644652-2	chr7	45644552	45644752	+	923.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172418, intron 9 of 9)	intron (NM_172418, intron 9 of 9)	4675.0	NM_172418	74490.0	Mm.107442	NM_172418	ENSMUSG00000042918	Mamstr	2810022D01Rik|5430432N15Rik|AW743872|Mastr	MEF2 activating motif and SAP domain containing transcriptional regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-59948185-4	chr11	59948086	59948286	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045273)	promoter-TSS (NR_045273)	-28.0	NM_138675	192191.0	Mm.125288	NM_138675	ENSMUSG00000061650	Med9	BC019367|Med25	mediator complex subunit 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-41433350-3	chr13	41433261	41433461	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111324, intron 1 of 7)	intron (NM_001111324, intron 1 of 7)	53999.0	NM_001111324	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-25362410-4	chr10	25362313	25362513	+	936.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358754, intron 1 of 16)	intron (NM_001358754, intron 1 of 16)	2615.0	NM_001358751	13822.0	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	2.0548530391296	1.47422360191574	1.22963083449009	1.79926631785236	1.71416564185091	1.01832000643692	2.42110807095667	0.97759850865631	0.0472592032577035	0.969235006983271	0.998431161219273
Merged-chr9-15933107-4	chr9	15933021	15933221	+	928.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080814, intron 21 of 24)	intron (NM_001080814, intron 21 of 24)	-58565.0	NM_145712	244701.0	Mm.222631	NM_145712	ENSMUSG00000050901	Mtnr1b	Mel-1B-R|Mel1b|Mt2	melatonin receptor 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-46533806-4	chr18	46533706	46533906	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7835.0	NM_173423	240263.0	Mm.38249	NM_173423	ENSMUSG00000033319	Fem1c	2610312A07Rik|3632443A22Rik|AI646567	fem-1 homolog c (C.elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-21692519-4	chr5	21692424	21692624	+	896.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359965, intron 1 of 4)	intron (NM_001359965, intron 1 of 4)	8872.0	NM_001359964	242864.0	Mm.153292	NM_178728	ENSMUSG00000044968	Napepld	A530089G06|Mbldc1|NAPE-PLD	N-acyl phosphatidylethanolamine phospholipase D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69125841-2	chr11	69125741	69125941	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011786)	promoter-TSS (NM_011786)	-536.0	NM_011786	23801.0	Mm.41989	NM_011786	ENSMUSG00000020892	Aloxe3	e-LOX-3|eLOX-3	arachidonate lipoxygenase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-30068612-2	chr16	30068512	30068712	+	666.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_008235)	TTS (NM_008235)	3255.0	NM_008235	15205.0	Mm.390859	NM_008235	ENSMUSG00000022528	Hes1	Hry|bHLHb39	hes family bHLH transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-136967330-8	chr6	136967054	136967254	+	815.15625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	12631.0	NM_023898	78600.0	Mm.290622	NM_023898	ENSMUSG00000064330	Pde6h	A930033D18Rik|PDEgamma	phosphodiesterase 6H, cGMP-specific, cone, gamma	protein-coding	1.70295009411219	1.81204860992604	3.06239377773392	1.34463403144326	1.07622480837882	0.925075699958574	1.755091275182	0.870849741094616	-2.67823434306523	0.0263321879147049	0.216987356181751
Merged-chr12-85963881-4	chr12	85963770	85963970	+	955.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347395, intron 29 of 32)	intron (NM_001347395, intron 29 of 32)	115171.0	NM_009368	21809.0	Mm.3992	NM_009368	ENSMUSG00000021253	Tgfb3	TGF-beta-3|Tgfb-3	transforming growth factor, beta 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-151204573-2	chr5	151204473	151204673	+	716.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14380.0	NR_153382	243362.0	Mm.209272	NM_146258	ENSMUSG00000016128	Stard13	DLC2|GT650	StAR-related lipid transfer (START) domain containing 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129499520-2	chr4	129499420	129499620	+	557.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8330.0	NM_001085491	68233.0	Mm.424983	NM_001085491	ENSMUSG00000078554	Fam229a	1700125D06Rik	family with sequence similarity 229, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118243229-2	chr11	118243129	118243329	+	815.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	B3|SINE|B2	5363.0	NM_001112699	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-47429636-2	chr4	47429536	47429736	+	638.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR25A|LTR|ERVK	43420.0	NM_001312869	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106787681-4	chr11	106787580	106787780	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355676, intron 2 of 13)	CpG	814.0	NM_007840	13207.0	Mm.491096	NM_007840	ENSMUSG00000020719	Ddx5	2600009A06Rik|G17P1|HUMP68|Hlr1|p68	DEAD (Asp-Glu-Ala-Asp) box polypeptide 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-80938861-2	chr16	80938761	80938961	+	577.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-261836.0	NM_001113208	17968.0	Mm.433941	NM_010954	ENSMUSG00000022762	Ncam2	Ncam-2|Ocam|RNCAM	neural cell adhesion molecule 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-68569762-2	chr13	68569676	68569876	+	841.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_172480, intron 8 of 14)	intron (NM_172480, intron 8 of 14)	12328.0	NM_001308475	210009.0	Mm.205514	NM_172480	ENSMUSG00000034617	Mtrr	4732420G08|MSR	5-methyltetrahydrofolate-homocysteine methyltransferase reductase	protein-coding	-0.375269033747425	-0.148046842822012	-0.619894551678402	-0.622288879769406	-0.369205428849449	-0.616072182607796	-0.619208335889141	-0.621871284044096	-1.45044606468253	0.594808305303685	1
Merged-chr9-57643979-4	chr9	57643901	57644101	+	913.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304761, intron 2 of 14)	intron (NM_001304761, intron 2 of 14)	1652.0	NM_007783	12988.0	Mm.21974	NM_007783	ENSMUSG00000032312	Csk	AW212630|p50CSK	c-src tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-38469371-4	chr2	38469292	38469492	+	882.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42305.0	NM_021606	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135574200-2	chr5	135574100	135574300	+	656.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1151.0	NM_001356630	56221.0	Mm.31505	NM_019577	ENSMUSG00000004814	Ccl24	CKb-6|MPIF-2|Scya24	chemokine (C-C motif) ligand 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-109872472-3	chr8	109872349	109872549	+	903.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122594, intron 1 of 18)	intron (NM_001122594, intron 1 of 18)	3846.0	NM_001122594	244650.0	Mm.23494	NM_001122594	ENSMUSG00000031732	Phlpp2	AI481772|C130044A18Rik|Phlppl	PH domain and leucine rich repeat protein phosphatase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-15428530-2	chr3	15428430	15428630	+	656.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2103.0	NM_001002898	320832.0	Mm.330924	NM_178792	ENSMUSG00000095788	Sirpb1a	9930027N05Rik|SIRP-beta|Sirpb|Sirpb1	signal-regulatory protein beta 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-128359316-4	chr7	128359219	128359419	+	914.525024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58853.0	NM_026418	67865.0	Mm.18635	NM_026418	ENSMUSG00000030844	Rgs10	2310010N19Rik	regulator of G-protein signalling 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46833395-2	chr8	46833295	46833495	+	889.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008391, intron 6 of 8)	intron (NM_008391, intron 6 of 8)	93650.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72161069-3	chr6	72161025	72161225	+	763.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37928.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75578750-2	chr11	75578650	75578850	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-9329.0	NM_008850	18738.0	Mm.3128	NM_008850	ENSMUSG00000017781	Pitpna	Pitpn|vb|vibrator	phosphatidylinositol transfer protein, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115579172-3	chr11	115579074	115579274	+	754.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001002929, intron 11 of 18)	intron (NM_001002929, intron 11 of 18)	14730.0	NM_001002929	445007.0	Mm.4379	NM_001002929	ENSMUSG00000020739	Nup85	Pcnt1|frount	nucleoporin 85	protein-coding	2.13141822595595	2.34255360119513	2.90185176467368	0.88061478897704	1.86289522774622	0.941845741470588	0.911835028813958	0.884957363745529	-2.70643106680743	0.0374765353040817	0.275404330693164
Merged-chr13-96670956-4	chr13	96670871	96671071	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008255)	promoter-TSS (NM_008255)	-35.0	NM_008255	15357.0	Mm.316652	NM_008255	ENSMUSG00000021670	Hmgcr	HMG-CoAR|Red	3-hydroxy-3-methylglutaryl-Coenzyme A reductase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97718042-4	chr11	97718010	97718210	+	897.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_054051, exon 10 of 10)	3' UTR (NM_054051, exon 10 of 10)	14676.0	NM_011971	26446.0	Mm.21874	NM_011971	ENSMUSG00000069744	Psmb3	AL033320|C10-II	proteasome (prosome, macropain) subunit, beta type 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-59349919-1	chr4	59349819	59350019	+	721.5	f0_balb.idr	exon (NM_001163288, exon 12 of 17)	exon (NM_001163288, exon 12 of 17)	88714.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-101825064-2	chr5	101824964	101825164	+	589.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	59934.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-8841050-1	chr5	8840950	8841150	+	586.0	f0_balb.idr	intron (NM_011075, intron 21 of 27)	intron (NM_011075, intron 21 of 27)	-42527.0	NR_152132	330031.0	Mm.389059	NR_152132		Gm5106	A230021K14|EG330031	predicted gene 5106	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-87486089-2	chr14	87485987	87486187	+	627.25	f0_c57.idr|f1_balb.idr	intron (NM_001253755, intron 8 of 11)	intron (NM_001253755, intron 8 of 11)	69504.0	NM_001253755	219249.0	Mm.35168	NM_172605	ENSMUSG00000022019	Tdrd3	4732418C03Rik|6720468N18	tudor domain containing 3	protein-coding	2.40176892697548	2.8226020905526	3.20929923145792	2.86426581141138	3.25687067852883	2.71254280783864	2.48165973807901	3.21275940271686	0.208881255749026	0.758925390112587	0.998431161219273
Merged-chr1-172191690-4	chr1	172191585	172191785	+	955.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151641, intron 11 of 13)	intron (NR_151641, intron 11 of 13)	15119.0	NM_001329871	18611.0	Mm.544	NM_011063	ENSMUSG00000013698	Pea15a	Mat1|PEA-15|Pea15|Pkcs15	phosphoprotein enriched in astrocytes 15A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67702916-4	chr10	67702828	67703028	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-130969.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-95148799-4	chr10	95148686	95148886	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A4-int|LTR|ERVL-MaLR	-2961.0	NR_131146	628062.0		NR_131146	ENSMUSG00000112481	Gm29684	-	predicted gene, 29684	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91886104-2	chr16	91886005	91886205	+	555.25	f0_c57.idr|f1_c57bl6.idr	intron (NM_010587, intron 28 of 38)	intron (NM_010587, intron 28 of 38)	45525.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-51376291-3	chr2	51376179	51376379	+	925.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61621.0	NR_130155	73375.0	Mm.396227	NR_130155	ENSMUSG00000086007	1700057H21Rik	-	RIKEN cDNA 1700057H21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-154858595-1	chr4	154858495	154858695	+	550.0	f1_balb.idr	intron (NM_172878, intron 2 of 6)	intron (NM_172878, intron 2 of 6)	2395.0	NM_172878	242800.0	Mm.72944	NM_172878	ENSMUSG00000046637	Ttc34	4932418L02|B230396O12Rik	tetratricopeptide repeat domain 34	protein-coding	0.636526488824092	1.23152727045767	0.661861164856855	1.37019962362762	1.54691049998041	1.37809894904079	0.873106848209586	0.654091841267522	0.60556230464923	0.694976273178974	0.997870549741095
Merged-chr5-148453554-2	chr5	148453454	148453654	+	580.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53650.0	NM_007513	11987.0	Mm.275489	NM_007513	ENSMUSG00000041313	Slc7a1	4831426K01Rik|AI447493|Atrc-1|Atrc1|Cat1|Rec-1|Rev-1|mCAT-1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-41035470-2	chr14	41035370	41035570	+	841.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-21637.0	NM_001316737	70564.0	Mm.27227	NM_027464	ENSMUSG00000021792	Fam213a	5730469M10Rik|AU040822|Adrx|Pamm	family with sequence similarity 213, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-136988723-2	chr6	136988636	136988836	+	720.0	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	34213.0	NM_023898	78600.0	Mm.290622	NM_023898	ENSMUSG00000064330	Pde6h	A930033D18Rik|PDEgamma	phosphodiesterase 6H, cGMP-specific, cone, gamma	protein-coding	3.28207189409967	2.62453193127066	3.23250475825114	4.35807893429725	1.1054490535076	1.29528745189392	1.56010046391051	1.96465219163145	-4.21067753924215	1.56404140774374e-05	0.000662307134474448
Merged-chr7-127969853-2	chr7	127969753	127969953	+	694.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001347649, exon 3 of 15)	exon (NM_001347649, exon 3 of 15)	2374.0	NM_139149	233908.0	Mm.277680	NM_139149	ENSMUSG00000030795	Fus	D430004D17Rik|D930039C12Rik|Fus1|Tls	fused in sarcoma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-100914858-1	chr15	100914758	100914958	+	585.0	f0_balb.idr	intron (NM_001077499, intron 1 of 26)	intron (NM_001077499, intron 1 of 26)	-21413.0	NM_011323	20273.0	Mm.385012	NM_011323	ENSMUSG00000023033	Scn8a	AI853486|C630029C19Rik|NaCh6|Nav1.6|dmu|med|mnd-2|mnd2|nmf2|nmf335|nmf58|nur14|seal	sodium channel, voltage-gated, type VIII, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-132859871-4	chr7	132859778	132859978	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198017, intron 1 of 8)	intron (NM_198017, intron 1 of 8)	653.0	NM_198017	109359.0	Mm.274824	NM_198017	ENSMUSG00000030965	Abraxas2	AA589499|AI853413|Abro1|C430003P19Rik|Fam175b	BRISC complex subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-79783563-2	chr10	79783463	79783663	+	555.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_031380)	TTS (NM_031380)	5422.0	NM_001042710	73106.0	Mm.491308	NM_001042710	ENSMUSG00000020323	Prss57	2900092M14Rik|GLGL782|NSP4|Prssl1|UNQ782	protease, serine 57	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-79846779-2	chr3	79846681	79846881	+	705.25	f0_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4119.0	NM_027495	70652.0	Mm.46635	NM_027495	ENSMUSG00000027956	Tmem144	1110057I03Rik|5730537D05Rik	transmembrane protein 144	protein-coding	2.40215190041503	3.09605498698838	2.99023761250912	3.40155311993918	1.90919203903785	1.42138801004338	1.88758112158609	2.17324552137671	-2.45551345938048	0.00337121790582948	0.04942018567267
Merged-chr5-114897609-4	chr5	114897471	114897671	+	879.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_011854, exon 1 of 6)	5' UTR (NM_011854, exon 1 of 6)	637.0	NM_001359181	23962.0	Mm.228363	NM_011854	ENSMUSG00000029561	Oasl2	M1204|Mmu-OASL|Oasl	2'-5' oligoadenylate synthetase-like 2	protein-coding	3.1693953634594	2.89130796292047	3.66142718452698	3.2541476443793	3.41420628673341	3.80849052339863	3.81998331963473	2.9720287981284	0.423450233621706	0.455230891093749	0.919253057979521
Merged-chr13-36052836-2	chr13	36052736	36052936	+	562.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_201358, intron 2 of 2)	MLT1H1|LTR|ERVL-MaLR	64521.0	NM_201358	380840.0	Mm.390576	NM_201358	ENSMUSG00000046573	Lyrm4	BC034664|Gm903	LYR motif containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-25096981-4	chr8	25096892	25097092	+	958.18335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031257, intron 1 of 11)	intron (NM_031257, intron 1 of 11)	4819.0	NM_031257	83436.0	Mm.261122	NM_031257	ENSMUSG00000031557	Plekha2	6430512N22Rik|AI851530|AU041791|TAPP2|W91773	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53386427-4	chr4	53386304	53386504	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR89|LTR|ERVL?	-54009.0	NM_001159633	100434.0	Mm.482207	NM_133891	ENSMUSG00000028412	Slc44a1	2210409B22Rik|4833416H08Rik|AW547365|CHTL1|CTL1|Cdw92	solute carrier family 44, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-43512949-3	chr13	43512842	43513042	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-31969.0	NM_019930	56705.0	Mm.148781	NM_019930	ENSMUSG00000038546	Ranbp9	IBAP-1|Ibap1|RanBPM	RAN binding protein 9	protein-coding	2.23438245100165	1.75507003419661	2.29194442570287	2.90250742326976	2.4900980814219	3.78968051919117	1.70672302670238	3.22003938010694	1.22182274159811	0.144009820378042	0.59294091451467
Merged-chr2-25580691-4	chr2	25580518	25580718	+	810.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001005424)	promoter-TSS (NM_001005424)	-519.0	NM_001005424	381353.0	Mm.379511	NM_001005424	ENSMUSG00000029419	Gm996	Ajm1	predicted gene 996	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-94143498-4	chr13	94143429	94143629	+	889.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172589, intron 2 of 3)	intron (NM_172589, intron 2 of 3)	85733.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126637320-2	chr7	126637220	126637420	+	723.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-11850.0	NM_019738	56312.0	Mm.18742	NM_019738	ENSMUSG00000030717	Nupr1	2310032H04Rik|Com1|p8	nuclear protein transcription regulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-145837872-2	chr2	145837772	145837972	+	721.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028724, intron 4 of 12)	intron (NM_028724, intron 4 of 12)	51756.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122058161-2	chr5	122058061	122058261	+	597.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	-8310.0	NM_001312908	13048.0	Mm.156172	NM_007804	ENSMUSG00000042589	Cux2	1700051K22Rik|Cutl2|Cux-2	cut-like homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-73629602-5	chr15	73629483	73629683	+	835.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4839.0	NM_001033219	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-25131018-3	chr10	25130923	25131123	+	774.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	69147.0	NM_001347460	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-31050442-2	chr1	31050367	31050567	+	840.333374	f0_c57.idr|f1_c57bl6.idr	intron (NR_136907, intron 1 of 3)	intron (NR_136907, intron 1 of 3)	45987.0	NR_136907	102634473.0	Mm.484482	NR_136907	ENSMUSG00000100371	Gm29669	-	predicted gene 29669	ncRNA	2.19526932561977	1.68410614720485	1.18466492153644	2.5559145594029	2.03026669310538	2.39720620070523	1.19071656785114	2.02519966947472	-0.0881601087250198	0.935518461610589	0.998431161219273
Merged-chr10-40133223-4	chr10	40133126	40133326	+	781.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 1 of 5)	intron (NM_001114332, intron 1 of 5)	9028.0	NM_028247	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80329949-4	chr10	80329854	80330054	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008793)	promoter-TSS (NM_008793)	-191.0	NM_001204931	70335.0	Mm.28147	NM_139292	ENSMUSG00000035504	Reep6	0610011M24Rik|Dp1l1	receptor accessory protein 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4233072-2	chr19	4232972	4233172	+	711.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_132280, intron 2 of 2)	intron (NR_132280, intron 2 of 2)	657.0	NR_132280	69745.0	Mm.32518	NM_027196	ENSMUSG00000024854	Pold4	2410012M21Rik|AI463381|AW060307|Polds|p12	polymerase (DNA-directed), delta 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-76957350-4	chr12	76957213	76957413	+	961.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146176, intron 1 of 3)	intron (NM_001146176, intron 1 of 3)	4935.0	NM_008558	17187.0	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-17733222-4	chr10	17733132	17733332	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10004.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5475736-2	chr19	5475636	5475836	+	568.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021474, intron 3 of 10)	intron (NM_021474, intron 3 of 10)	1001.0	NM_001164352	58859.0	Mm.276367	NM_021474	ENSMUSG00000024909	Efemp2	0610011K11Rik|Fbln4|MBP1	epidermal growth factor-containing fibulin-like extracellular matrix protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126536333-4	chr8	126536229	126536429	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57107.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-52378009-3	chr2	52377896	52378096	+	902.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-39198.0	NM_010889	17996.0	Mm.389247	NM_010889	ENSMUSG00000026950	Neb	AI595938	nebulin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-78412422-4	chr10	78412343	78412543	+	880.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010925, intron 1 of 12)	intron (NM_010925, intron 1 of 12)	600.0	NM_010925	18114.0	Mm.38344	NM_010925	ENSMUSG00000061032	Rrp1	AL033305|AL033306|AU018604|NNP-1|Nnp1	ribosomal RNA processing 1 homolog (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-20885159-6	chr14	20884904	20885104	+	896.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-44394.0	NM_009502	22330.0	Mm.279361	NM_009502	ENSMUSG00000021823	Vcl	9430097D22|AA571387|AI462105|AW545629	vinculin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124898124-3	chr6	124898022	124898222	+	866.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER102a|DNA|hAT-Charlie	-9922.0	NM_013488	12504.0	Mm.2209	NM_013488	ENSMUSG00000023274	Cd4	L3T4|Ly-4	CD4 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-41618610-4	chr3	41618493	41618693	+	977.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53713.0	NM_001130186	269424.0	Mm.286285	NM_172303	ENSMUSG00000025764	Jade1	AU041499|D530048A03Rik|Phf17|mKIAA1807	jade family PHD finger 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-144314667-4	chr1	144314555	144314755	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-65551.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-73792695-2	chr18	73792595	73792795	+	663.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145494, intron 7 of 15)	intron (NM_145494, intron 7 of 15)	22697.0	NM_145494	107029.0	Mm.36817	NM_145494	ENSMUSG00000024556	Me2	AW120568|D030040L20Rik|NAD-ME	malic enzyme 2, NAD(+)-dependent, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-86542746-2	chr1	86542646	86542846	+	864.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001360816)	TTS (NM_001360816)	16189.0	NM_001360830	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80678338-4	chr10	80678240	80678440	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2047.0	NM_021462	17347.0	Mm.42126	NM_021462	ENSMUSG00000020190	Mknk2	2010016G11Rik|Gprk7|Mnk2	MAP kinase-interacting serine/threonine kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-142879958-2	chr5	142879858	142880058	+	832.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033312, intron 3 of 4)	intron (NM_001033312, intron 3 of 4)	15280.0	NM_001033312	231863.0	Mm.89753	NM_001033312	ENSMUSG00000066640	Fbxl18	AI427077|B130019G13Rik|C330021B20Rik	F-box and leucine-rich repeat protein 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-122680578-4	chr10	122680479	122680679	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110218, intron 1 of 9)	intron (NM_001110218, intron 1 of 9)	1264.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	3.97567798328522	3.81262495498856	2.84792287468342	3.85367337101491	4.09577032757696	4.39933835609507	2.3336696044683	3.74430595265377	0.2082202547302	0.724664979493032	0.998431161219273
Merged-chr10-111050446-1	chr10	111050346	111050546	+	784.0	f0_balb.idr	Intergenic	G-rich|Low_complexity|Low_complexity	-40380.0	NM_172554	320150.0	Mm.339281	NM_172554	ENSMUSG00000035798	Zdhhc17	A230053P19Rik|BB187739|D130071N24Rik|DHHC-17|Hip14	zinc finger, DHHC domain containing 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85342548-4	chr12	85342434	85342634	+	980.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_026775, exon 5 of 5)	3' UTR (NM_026775, exon 5 of 5)	-3172.0	NM_145138	217718.0	Mm.29071	NM_145138	ENSMUSG00000034290	Nek9	C130021H08Rik	NIMA (never in mitosis gene a)-related expressed kinase 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-20704302-1	chr18	20704202	20704402	+	573.0	f0_balb.idr	intron (NM_019737, intron 4 of 8)	intron (NM_019737, intron 4 of 8)	-39042.0	NR_155534	102633478.0		NR_155534	ENSMUSG00000085595	Gm16090	-	predicted gene 16090	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-73445802-3	chr12	73445692	73445892	+	915.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger9b|DNA|TcMar-Tigger	-36229.0	NR_046013	380765.0	Mm.490476	NR_046013	ENSMUSG00000056359	D830013O20Rik	Gm891	RIKEN cDNA D830013O20 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3434393-2	chr12	3434293	3434493	+	676.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001270988, intron 1 of 11)	RMER15|LTR|ERVL	7536.0	NM_172421	75302.0	Mm.120475	NM_172421	ENSMUSG00000037486	Asxl2	4930556B16Rik|mKIAA1685	additional sex combs like 2, transcriptional regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-132130655-3	chr1	132130529	132130729	+	846.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008795, intron 1 of 15)	intron (NM_008795, intron 1 of 15)	9056.0	NM_008795	18557.0	Mm.28130	NM_008795	ENSMUSG00000026437	Cdk18	AA682070|Ctk18|Pctk3	cyclin-dependent kinase 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46315434-3	chr19	46315309	46315509	+	877.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028627, intron 12 of 17)	intron (NM_028627, intron 12 of 17)	9479.0	NM_001177370	18034.0	Mm.102365	NM_019408	ENSMUSG00000025225	Nfkb2	NF-kappaB2|lyt|p49|p49/p100|p50B|p52	nuclear factor of kappa light polypeptide gene enhancer in B cells 2, p49/p100	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-60706193-2	chr18	60706093	60706293	+	932.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001348100, intron 3 of 14)	intron (NM_001348100, intron 3 of 14)	21373.0	NM_001348103	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	0.901918181060155	0.941588190795994	0.449554100376671	1.06525511407251	0.70498786686174	0.458392557205266	0.628880156817989	0.609066624089256	-1.60240128930031	0.326558513251989	1
Merged-chr13-99339397-3	chr13	99339287	99339487	+	787.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026873, intron 3 of 9)	intron (NM_026873, intron 3 of 9)	5291.0	NM_026873	68927.0	Mm.276502	NM_026873	ENSMUSG00000021650	Ptcd2	1190005P08Rik	pentatricopeptide repeat domain 2	protein-coding	-0.232507856427632	0.516000322526466	-0.222469116527766	0.0844343191379009	-0.231574820628661	0.151722648939097	-0.221391748917179	-0.225580989829709	-1.83570231008116	0.447897597550199	1
Merged-chr5-138222280-3	chr5	138222239	138222439	+	714.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-3565.0	NM_001013773	381680.0	Mm.156846	NM_001013773	ENSMUSG00000047592	Nxpe5	-	neurexophilin and PC-esterase domain family, member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-78730086-2	chr17	78729945	78730145	+	654.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011500, intron 1 of 17)	intron (NM_011500, intron 1 of 17)	6515.0	NM_011500	268980.0	Mm.311915	NM_011500	ENSMUSG00000024077	Strn	AU022939|D130055P19	striatin, calmodulin binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-59542726-4	chr9	59542642	59542842	+	883.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010421, intron 1 of 13)	intron (NM_010421, intron 1 of 13)	3202.0	NM_010421	15211.0	Mm.2284	NM_010421	ENSMUSG00000025232	Hexa	Hex-1	hexosaminidase A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-41018660-2	chr8	41018560	41018760	+	962.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_015457, intron 1 of 2)	intron (NR_015457, intron 1 of 2)	1192.0	NR_015457	78849.0	Mm.440930	NR_015457	ENSMUSG00000084960	B430010I23Rik	-	RIKEN cDNA B430010I23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-146647518-1	chr6	146647418	146647618	+	681.0	f1_balb.idr	non-coding (NR_038089, exon 1 of 1)	non-coding (NR_038089, exon 1 of 1)	284.0	NR_038089	626175.0	Mm.391544	NM_001178001		Gm6654	EG626175	predicted pseudogene 6654	pseudo	-1.13146769101922	-1.10460487238646	-1.11735372523027	-1.12713099301154	-1.13082009585647	-0.300663969208598	-1.11446766439333	-1.12595147812057	3.06518455575839	0.353555291099784	1
Merged-chr3-146157036-4	chr3	146156942	146157142	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005846, intron 1 of 13)	intron (NM_001005846, intron 1 of 13)	6868.0	NM_001005846	68279.0	Mm.116862	NM_026656	ENSMUSG00000011008	Mcoln2	3300002C04Rik|AI549968|C86638|TRPML2	mucolipin 2	protein-coding	3.01201623482292	2.94526458985196	1.50900798964369	3.23785018554652	2.81716586822436	3.15757578886049	2.01945355040981	2.56361630866218	-0.235606652863383	0.77205329165776	0.998431161219273
Merged-chr4-36038965-4	chr4	36038863	36039063	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166000, intron 7 of 8)	intron (NM_001166000, intron 7 of 8)	-193759.0	NM_175516	242384.0	Mm.132507	NM_175516	ENSMUSG00000045083	Lingo2	B230217C06Rik|Lern3|Lrrn6c	leucine rich repeat and Ig domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-63988928-2	chr9	63988828	63989028	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008542, intron 3 of 3)	intron (NM_008542, intron 3 of 3)	33131.0	NM_008542	17130.0	Mm.325757	NM_008542	ENSMUSG00000036867	Smad6	Madh6|b2b390Clo	SMAD family member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-32075296-2	chr17	32075196	32075396	+	897.9166869999999	f1_balb.idr|f1_c57bl6.idr	TTS (NR_027316)	TTS (NR_027316)	16127.0	NR_027316	435518.0	Mm.328944	NR_027316	ENSMUSG00000002791	Pdxk-ps	Gm9743	pyridoxal (pyridoxine, vitamin B6) kinase, pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3371238-2	chr19	3371138	3371338	+	648.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013495, intron 11 of 18)	intron (NM_013495, intron 11 of 18)	-17619.0	NM_001039658	17771.0	Mm.209941	NM_010841	ENSMUSG00000024905	Tesmin	Mtl5	testis expressed metallothionein like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-17019909-2	chr11	17019809	17020009	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11191.0	NM_019549	56193.0	Mm.98232	NM_019549	ENSMUSG00000020120	Plek	2010300B13Rik	pleckstrin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-17693618-2	chr16	17693518	17693718	+	652.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358404, intron 2 of 16)	intron (NM_001358404, intron 2 of 16)	29282.0	NM_001285886	94112.0	Mm.208970	NM_033609	ENSMUSG00000012114	Med15	A230074L19Rik|AW536074|Pcqap|mPcqap	mediator complex subunit 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-165582456-2	chr1	165582356	165582556	+	877.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	52085.0	NM_001001880	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-30990443-3	chr17	30990350	30990550	+	906.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177465, intron 13 of 21)	intron (NM_177465, intron 13 of 21)	35767.0	NM_177465	52020.0	Mm.25923	NM_177465	ENSMUSG00000054134	Umodl1	D17Ertd488e	uromodulin-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-60303571-2	chr10	60303471	60303671	+	569.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001146120)	TTS (NM_001146120)	19110.0	NM_001146124	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46424888-2	chr19	46424788	46424988	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025391, intron 2 of 11)	intron (NM_001025391, intron 2 of 11)	27992.0	NM_015752	24069.0	Mm.41210	NM_015752	ENSMUSG00000025231	Sufu	Su(fu)	SUFU negative regulator of hedgehog signaling	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32506854-4	chr2	32506755	32506955	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28504.0	NM_153560	98952.0	Mm.4065	NM_153560	ENSMUSG00000039157	Fam102a	AI426465|C230093N12Rik|Eeig1	family with sequence similarity 102, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-121515860-3	chr10	121515761	121515961	+	649.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39611.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-142063130-4	chr4	142063022	142063222	+	919.966675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145402, intron 1 of 2)	intron (NM_145402, intron 1 of 2)	-21176.0	NR_027137	100038693.0	Mm.402714	NR_027137	ENSMUSG00000073728	Tmem51os1	Gm10565|Tmem51as1	Tmem51 opposite strand 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55091674-3	chr14	55091555	55091755	+	718.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039198, intron 1 of 9)	CpG	393.0	NM_001039198	239102.0	Mm.441113	NM_001039198	ENSMUSG00000040721	Zfhx2	ZFH-5	zinc finger homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84063993-4	chr8	84063838	84064038	+	799.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4|SINE|ID	-2898.0	NM_009055	19724.0	Mm.7892	NM_009055	ENSMUSG00000031706	Rfx1	AI047719|AI385641	regulatory factor X, 1 (influences HLA class II expression)	protein-coding	-0.364924531133468	-0.351010977540675	-0.0189498506110457	-0.18884480438951	-0.364054163508757	-0.34998589738301	0.439946994587571	-0.358463973781003	1.08854691782518	0.660231403266328	1
Merged-chr6-29240888-2	chr6	29240788	29240988	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24524.0	NM_001302934	23917.0	Mm.260707	NM_011829	ENSMUSG00000003500	Impdh1	B930086D20Rik|IMPDH-I	inosine monophosphate dehydrogenase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-8741569-8	chr19	8741475	8741675	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019829)	promoter-TSS (NM_019829)	151.0	NM_001167799	56389.0	Mm.153061	NM_019829	ENSMUSG00000010110	Stx5a	0610031F24Rik|D19Ertd627e|Stx5	syntaxin 5A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-100108850-2	chr12	100108750	100108950	+	731.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3481.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171232029-4	chr1	171231936	171232136	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010185, intron 1 of 4)	intron (NM_010185, intron 1 of 4)	2313.0	NM_010185	14127.0	Mm.22673	NM_010185	ENSMUSG00000058715	Fcer1g	AI573376|CD23|FcR-gamma|FcR[g]|FcRgamma|Fce1g|FcepsilonRI|Ly-50	Fc receptor, IgE, high affinity I, gamma polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-139218603-6	chr4	139218448	139218648	+	943.694458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	24437.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	2.38909635649698	3.17561238341886	3.39968863713144	3.06984100022122	2.41059506458886	2.85996006823011	3.94674983088267	2.03771384058829	-0.0292019877185994	0.968497090746008	0.998431161219273
Merged-chr2-16212965-4	chr2	16212850	16213050	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310455, intron 35 of 38)	intron (NM_001310455, intron 35 of 38)	-143354.0	NM_026162	67448.0	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-26603910-4	chr2	26603819	26604019	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026212, intron 1 of 5)	CpG	498.0	NM_026212	67512.0	Mm.24244	NM_026212	ENSMUSG00000026922	Agpat2	2510002J07Rik|AV000834|BSCL|BSCL1|LPAAB|LPAAT-beta	1-acylglycerol-3-phosphate O-acyltransferase 2 (lysophosphatidic acid acyltransferase, beta)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96580889-2	chr3	96580789	96580989	+	991.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001293701, exon 3 of 7)	exon (NM_001293701, exon 3 of 7)	13292.0	NM_027241	69870.0	Mm.292739	NM_027241	ENSMUSG00000028104	Polr3gl	2010003I19Rik	polymerase (RNA) III (DNA directed) polypeptide G like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133875290-3	chr4	133875180	133875380	+	931.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285506)	promoter-TSS (NM_001285506)	-549.0	NM_001285506	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	0.977033614898005	0.708589873068435	1.06263485979195	1.57110884819518	1.48815301149089	0.711182322902044	0.699575650353358	1.39897661502645	0.0466635761942268	0.975351903932164	0.998431161219273
Merged-chr11-74834770-5	chr11	74834635	74834835	+	790.150024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010813, intron 1 of 5)	intron (NM_010813, intron 1 of 5)	3811.0	NM_010813	17428.0	Mm.3759	NM_010813	ENSMUSG00000000282	Mnt	Rox|bHLHd3	max binding protein	protein-coding	1.5087642744877	0.886534123929025	1.75494935294052	1.69870133415066	1.70119409231543	0.889893133200951	0.874806639072913	1.37228660112838	-0.85209057904766	0.535311333677788	0.95286627222167
Merged-chr1-178449294-4	chr1	178449141	178449341	+	942.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026626, intron 2 of 6)	intron (NM_026626, intron 2 of 6)	43223.0	NM_026626	68226.0	Mm.252132	NM_026626	ENSMUSG00000026495	Efcab2	1700073K01Rik|D830011E08Rik	EF-hand calcium binding domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-50525115-4	chr2	50525078	50525278	+	785.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	170153.0	NR_154590	102634280.0		NR_154590		Gm48908	-	predicted gene 48908	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-113442346-2	chr9	113442246	113442446	+	650.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR50|LTR|ERVL	144806.0	NR_040760	102688.0	Mm.394901	NR_040760	ENSMUSG00000109890	AU023762	-	expressed sequence AU023762	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-172048235-2	chr1	172048135	172048335	+	669.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	G-rich|Low_complexity|Low_complexity	9361.0	NM_010916	18071.0	Mm.2474	NM_010916	ENSMUSG00000051251	Nhlh1	Hen1|Nscl|Tal2|bHLHa35	nescient helix loop helix 1	protein-coding	1.20274869494286	1.71028608185876	1.42526478977566	1.1085530657449	1.21071899229683	1.72316791549325	1.43622725081489	1.1122854978218	0.0390860959686159	0.973934725297295	0.998431161219273
Merged-chr12-54993804-4	chr12	54993719	54993919	+	912.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7483.0	NM_013815	217578.0	Mm.479583	NM_013815	ENSMUSG00000035021	Baz1a	Acf1|B930060C03|BC065123|Gtl5|Wcrf180|cbp146	bromodomain adjacent to zinc finger domain 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-8864027-4	chr10	8863926	8864126	+	646.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 1 of 19)	intron (NM_175155, intron 1 of 19)	22044.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	3.55976885343088	2.73021152598384	3.14465550955455	3.55206389825072	3.18683262274447	3.56450222767141	3.16938051370332	3.86838736940973	0.286812814426182	0.617598997882829	0.977517868708383
Merged-chr8-64849693-2	chr8	64849593	64849793	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_178633, exon 1 of 15)	5' UTR (NM_178633, exon 1 of 15)	231.0	NM_178633	77113.0	Mm.350347	NM_178633	ENSMUSG00000031605	Klhl2	6030411N21Rik|8530402H02Rik|ABP-KELCH|AU020744|Mav	kelch-like 2, Mayven	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21004002-2	chr9	21003902	21004102	+	610.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357899, intron 3 of 8)	ID_B1|SINE|B4	1265.0	NM_001357899	66163.0	Mm.427576	NM_023167	ENSMUSG00000003299	Mrpl4	1110017G11Rik	mitochondrial ribosomal protein L4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99453650-1	chr7	99453550	99453750	+	917.0	f1_balb.idr	intron (NM_201352, intron 12 of 17)	intron (NM_201352, intron 12 of 17)	-12354.0	NM_028145	72184.0	Mm.153585	NM_028145	ENSMUSG00000035298	Klhl35	2810406K13Rik	kelch-like 35	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-52486058-2	chr6	52485958	52486158	+	583.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6393.0	NR_046049	74304.0	Mm.490579	NR_046049	ENSMUSG00000107895	1700094M24Rik	-	RIKEN cDNA 1700094M24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-107809264-4	chr13	107809181	107809381	+	904.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 2 of 14)	L1MD3|LINE|L1	80783.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-93317049-2	chr10	93316949	93317149	+	708.833374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_152777)	promoter-TSS (NR_152777)	-354.0	NR_152777	102635316.0	Mm.404570	NR_152777	ENSMUSG00000111531	Gm32688	-	predicted gene, 32688	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-16436129-3	chr19	16436007	16436207	+	899.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_008137, exon 1 of 7)	5' UTR (NM_008137, exon 1 of 7)	440.0	NM_008137	14675.0	Mm.313181	NM_008137	ENSMUSG00000024697	Gna14	AU023208	guanine nucleotide binding protein, alpha 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-94078497-4	chr1	94078392	94078592	+	911.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER2|LTR|ERV1	-25939.0	NM_008798	18566.0	Mm.5024	NM_008798	ENSMUSG00000026285	Pdcd1	Ly101|PD-1|Pdc1	programmed cell death 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-80933784-4	chr17	80933697	80933897	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_131127)	TTS (NR_131127)	-10835.0	NM_026516	68027.0	Mm.357108	NM_026516	ENSMUSG00000024245	Tmem178	2810417M05Rik|Tmem178a	transmembrane protein 178	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-73453923-4	chr2	73453825	73454025	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289722)	promoter-TSS (NM_001289722)	-36.0	NM_001289722	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83109113-4	chr6	83109030	83109230	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026744)	promoter-TSS (NM_026744)	22.0	NM_026744	68499.0	Mm.333183	NM_026744	ENSMUSG00000030037	Mrpl53	1110007K17Rik	mitochondrial ribosomal protein L53	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-65805915-3	chr14	65805835	65806035	+	895.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023209)	promoter-TSS (NM_023209)	24.0	NM_023209	52033.0	Mm.24337	NM_023209	ENSMUSG00000022033	Pbk	2810434B10Rik|AW538537|D14Ertd732e|TOPK	PDZ binding kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-83297576-3	chr8	83297473	83297673	+	826.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009463, intron 5 of 5)	intron (NM_009463, intron 5 of 5)	7225.0	NM_009463	22227.0	Mm.4177	NM_009463	ENSMUSG00000031710	Ucp1	AI385626|Slc25a7|Ucp	uncoupling protein 1 (mitochondrial, proton carrier)	protein-coding	0.550021940627916	0.609032745903854	1.5023208553657	0.575628231848192	0.773317186629803	1.92192975044809	2.00763895139756	0.578247738879623	2.03958968314472	0.193756233736344	0.673301976936277
Merged-chr5-76668297-2	chr5	76668197	76668397	+	606.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	76583.0	NM_199032	381644.0	Mm.332452	NM_199032	ENSMUSG00000036403	Cep135	BC062951|Cep4|Gm1044	centrosomal protein 135	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-49699146-4	chr16	49699045	49699245	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028680)	promoter-TSS (NM_028680)	-149.0	NM_028680	73916.0	Mm.241276	NM_028680	ENSMUSG00000032965	Ift57	4833420A15Rik|Esrrbl1|Hippi|MHS4R2	intraflagellar transport 57	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-74456335-2	chr17	74456235	74456435	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033367, intron 1 of 8)	Lx9|LINE|L1	2773.0	NM_001033367	268973.0	Mm.311884	NM_001033367	ENSMUSG00000039193	Nlrc4	9530011P19Rik|CLAN|CLAN1|CLANA|CLANB|CLANC|CLAND|Card12|IPAF	NLR family, CARD domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-78765240-1	chr14	78765140	78765340	+	677.0	f0_balb.idr	Intergenic	Intergenic	-32511.0	NM_001081336	380921.0	Mm.89591	NM_001081336	ENSMUSG00000034731	Dgkh	5930402B05Rik|D130015C16|DGK	diacylglycerol kinase, eta	protein-coding	0.970830370601221	1.97883079691688	2.30336544062329	1.00323948705895	1.95871179269667	1.9949821136823	1.02722186037762	1.96801807394845	0.219419996657642	0.862265384520816	0.998431161219273
Merged-chr12-3110031-4	chr12	3109931	3110131	+	949.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GSAT_MM|Satellite|Satellite	-125760.0	NR_015551	74173.0	Mm.309774	NM_028796	ENSMUSG00000079179	Rab10os	1700012B15Rik|1810036A22Rik	RAB10, member RAS oncogene family, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-53449542-3	chr8	53449457	53449657	+	926.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62145.0	NM_001205054	11593.0	Mm.334535	NM_001005847	ENSMUSG00000031521	Aga	AW060726	aspartylglucosaminidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-9615762-2	chr3	9615662	9615862	+	594.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5677.0	NM_133218	170753.0	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-30619724-2	chr14	30619568	30619768	+	801.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011103, intron 1 of 17)	B1_Mur4|SINE|Alu	6540.0	NM_011103	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153446286-2	chr2	153446186	153446386	+	784.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001134300, intron 4 of 10)	intron (NM_001134300, intron 4 of 10)	-1807.0	NM_001001986	329540.0	Mm.50600	NM_001001986	ENSMUSG00000061411	Nol4l	4931410H15|8430427H17Rik|AI429157|Gm1636	nucleolar protein 4-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-72458151-4	chr11	72458037	72458237	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153060, intron 5 of 12)	intron (NM_153060, intron 5 of 12)	16810.0	NM_016776	18432.0	Mm.147946	NM_016776	ENSMUSG00000040463	Mybbp1a	AL024407|AU019902|P160|p160MBP|p67MBP	MYB binding protein (P160) 1a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36282264-2	chr1	36282164	36282364	+	571.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-8839.0	NM_153408	214854.0	Mm.389110	NM_153408	ENSMUSG00000047180	Neurl3	2010300P06Rik|Lincr	neuralized E3 ubiquitin protein ligase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-18643439-2	chr2	18643339	18643539	+	815.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29023.0	NM_147778	12238.0	Mm.249586	NM_147778	ENSMUSG00000051154	Commd3	AW550818|Bup|D2Ertd542e	COMM domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-57060461-6	chr17	57060403	57060603	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025877)	promoter-TSS (NM_025877)	-640.0	NM_025877	66972.0	Mm.23720	NM_025877	ENSMUSG00000046329	Slc25a23	2310067G05Rik|SCaMC-3	solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-10668338-3	chr8	10668226	10668426	+	893.861145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	214128.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-89831453-2	chr16	89831353	89831553	+	730.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009384, intron 15 of 27)	B1_Mus2|SINE|Alu	-13101.0	NM_001145887	21844.0	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83668315-1	chr11	83668215	83668415	+	554.0	f0_c57.idr	Intergenic	Intergenic	5731.0	NM_013652	20303.0	Mm.244263	NM_013652	ENSMUSG00000018930	Ccl4	AT744.1|Act-2|MIP-1B|Mip1b|Scya4	chemokine (C-C motif) ligand 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-80458241-4	chr15	80458104	80458304	+	855.912476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163189, intron 5 of 5)	intron (NM_001163189, intron 5 of 5)	-19601.0	NR_155274	102633578.0	Mm.397484	NR_155274	ENSMUSG00000115888	Gm31369	-	predicted gene, 31369	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-65663488-2	chr3	65663388	65663588	+	842.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2740.0	NM_001037923	624866.0	Mm.296317	NM_001037923	ENSMUSG00000074579	Lekr1	EG546798|EG624866|Gm6534	leucine, glutamate and lysine rich 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55709998-4	chr19	55709916	55710116	+	930.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7812.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	-0.575280590706129	-0.726110409532156	-0.730400031067427	-0.733730667569208	-0.738469214641644	-0.725147671992243	0.218008085593168	-0.733147475782637	2.66064494815513	0.342302452116782	1
Merged-chr6-53854673-3	chr6	53854555	53854755	+	874.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33830.0	NM_025817	66873.0	Mm.422727	NM_025817	ENSMUSG00000043496	Tril	1200009O22Rik|AI316813|mKIAA0644	TLR4 interactor with leucine-rich repeats	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-37540827-4	chr9	37540716	37540916	+	875.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020518, intron 3 of 6)	intron (NM_020518, intron 3 of 6)	1561.0	NM_020518	57276.0	Mm.27478	NM_020518	ENSMUSG00000001943	Vsig2	1190004B15Rik|2210413P10Rik|AU040484|CTX|Ctm	V-set and immunoglobulin domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-92178363-2	chr1	92178263	92178463	+	616.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_207225, intron 1 of 26)	intron (NM_207225, intron 1 of 26)	1978.0	NM_207225	208727.0	Mm.318567	NM_207225	ENSMUSG00000026313	Hdac4	4932408F19Rik|HD4	histone deacetylase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-108583335-2	chr9	108583235	108583435	+	570.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357465, intron 3 of 3)	intron (NM_001357465, intron 3 of 3)	-4665.0	NM_031392	83669.0	Mm.335454	NM_031392	ENSMUSG00000066357	Wdr6	mWDR6	WD repeat domain 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-40852109-4	chr4	40852021	40852221	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022305, intron 1 of 5)	MIRb|SINE|MIR	-1983.0	NR_039584	100628614.0		NR_039584	ENSMUSG00000096377	Mir5123	mmu-mir-5123|mu-mir-5123	microRNA 5123	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-17860293-4	chr17	17860210	17860410	+	995.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-5122.0	NM_008215	15116.0	Mm.255701	NM_008215	ENSMUSG00000003665	Has1	HAS	hyaluronan synthase 1	protein-coding	3.89494494068336	3.57713587032788	3.97508621565071	3.44630242400492	4.10714090389666	3.85755333199765	3.17204436381838	3.54575323804025	-0.0303920734802455	0.952064800334103	0.998431161219273
Merged-chr9-53397344-2	chr9	53397244	53397444	+	718.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_212445, intron 6 of 7)	B3A|SINE|B2	3542.0	NR_105807	102466640.0		NR_105807	ENSMUSG00000098362	Mir130c	Gm27641|mmu-mir-130c	microRNA 130c	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30956074-4	chr7	30955992	30956192	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011680, intron 3 of 9)	CpG-12986	711.0	NM_011680	22282.0	Mm.322453	NM_011680	ENSMUSG00000058239	Usf2	Usf-2|bHLHb12	upstream transcription factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-106462200-2	chr3	106462100	106462300	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20231.0	NM_001093754	72121.0	Mm.14816	NM_028110	ENSMUSG00000027901	Dennd2d	2010308M01Rik|AI451421	DENN/MADD domain containing 2D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-61052613-2	chr19	61052513	61052713	+	787.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_018869, intron 4 of 15)	intron (NM_018869, intron 4 of 15)	88227.0	NR_131956	414758.0	Mm.100056	NM_001001737	ENSMUSG00000074733	Zfp950	5830428H23Rik|AU016073|BC055757|Gm34518|Zfp826|mszf84	zinc finger protein 950	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-111058753-2	chr2	111058653	111058853	+	822.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-108509.0	NM_001355245	228432.0	Mm.483325	NM_001081556	ENSMUSG00000074968	Ano3	AI838058|B230324K02Rik|Tmem16c	anoctamin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24168007-3	chr17	24167892	24168092	+	777.694458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361534, intron 1 of 3)	intron (NM_001361534, intron 1 of 3)	817.0	NM_001361535	11984.0	Mm.30155	NM_009729	ENSMUSG00000024121	Atp6v0c	Atp6c|Atp6c2|Atp6l|Atpl|Atpl-rs1|PL16|VATL|Vma3	ATPase, H+ transporting, lysosomal V0 subunit C	protein-coding	0.989111822066551	0.599969896605083	0.589494056123477	0.765607298105621	0.569703045704887	1.28381367650512	1.2283924387036	1.46524140986119	2.17446278679533	0.173083666441844	0.640902961210202
Merged-chr4-142089822-2	chr4	142089722	142089922	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F2|SINE|Alu	-5518.0	NM_145402	214359.0	Mm.27587	NM_145402	ENSMUSG00000040616	Tmem51	BC003277	transmembrane protein 51	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-88568109-2	chr1	88568009	88568209	+	914.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER20B|LTR|ERVK	16592.0	NR_037971	100503197.0	Mm.99352	NR_037971	ENSMUSG00000100798	Gm19589	-	predicted gene, 19589	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99035614-2	chr15	99035514	99035714	+	672.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009448, intron 3 of 3)	intron (NM_009448, intron 3 of 3)	5723.0	NM_009448	22146.0	Mm.88212	NM_009448	ENSMUSG00000043091	Tuba1c	M[a]6|Tuba6	tubulin, alpha 1C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-93510900-2	chr1	93510800	93511000	+	932.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-1204.0	NM_145519	227377.0	Mm.243091	NM_145519	ENSMUSG00000034066	Farp2	AI465173|BC009153|D030026M03Rik|Fir|mKIAA0793	FERM, RhoGEF and pleckstrin domain protein 2	protein-coding	-1.84371485578039	-1.81332821174849	-1.82251738371298	-1.83006564316449	-1.84158176955426	-1.81133687985023	-1.5312619047181	-1.82871450833159	1.60090129203521	0.64914985597185	1
Merged-chr4-149697922-4	chr4	149697798	149697998	+	992.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008840, intron 1 of 24)	intron (NM_008840, intron 1 of 24)	810.0	NM_001164050	18707.0	Mm.229108	NM_008840	ENSMUSG00000039936	Pik3cd	2410099E07Rik|2610208K16Rik|AW545373|p110delta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding	2.83375005590479	2.56016353884503	2.70777629341724	2.27384913517249	2.92678690232587	2.82087607703139	2.9227811150435	1.75404544242489	0.162535987787434	0.833004444812427	0.998431161219273
Merged-chr19-5456587-2	chr19	5456416	5456616	+	822.916626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_010235)	TTS (NM_010235)	1047.0	NM_198616	240514.0	Mm.329657	NM_198616	ENSMUSG00000095098	Ccdc85b	AI842788|BB115872	coiled-coil domain containing 85B	protein-coding	0.544299857336142	-0.129162844925129	0.0361726635908522	-0.137162882571743	0.224956593905166	-0.12814195883504	0.0406826615183023	-0.136555637512721	-0.891262926396128	0.688821943770761	1
Merged-chr9-108783757-4	chr9	108783661	108783861	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-12233.0	NM_029634	76500.0	Mm.276336	NM_029634	ENSMUSG00000032599	Ip6k2	1500005N04Rik|AW050208|Ihpk2	inositol hexaphosphate kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-63939124-4	chr7	63939021	63939221	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021366)	promoter-TSS (NM_021366)	-206.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-13387866-2	chr8	13387766	13387966	+	583.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009724, intron 5 of 6)	intron (NM_009724, intron 5 of 6)	8912.0	NM_009724	11945.0	Mm.154039	NM_009724	ENSMUSG00000031449	Atp4b	AV080843	ATPase, H+/K+ exchanging, beta polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30285525-1	chr7	30285425	30285625	+	599.0	f0_balb.idr	intron (NR_144498, intron 2 of 2)	intron (NR_144498, intron 2 of 2)	-5104.0	NM_146186	233064.0	Mm.271677	NM_146186	ENSMUSG00000037020	Wdr62	2310038K02Rik|b2b1508Clo	WD repeat domain 62	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-69675498-3	chr18	69675391	69675591	+	783.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 15 of 19)	T-rich|Low_complexity|Low_complexity	-250068.0	NM_201362	381175.0	Mm.266831	NM_201362	ENSMUSG00000038903	Ccdc68	BC046343	coiled-coil domain containing 68	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-85125856-4	chr10	85125730	85125930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028832, intron 2 of 2)	L2|LINE|L2	2197.0	NM_028832	74238.0	Mm.255401	NM_028832	ENSMUSG00000049038	Mterf2	1700007D05Rik|Mterfd3	mitochondrial transcription termination factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-18391884-2	chr2	18391784	18391984	+	579.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001190817, intron 1 of 12)	intron (NM_001190817, intron 1 of 12)	946.0	NM_001190817	13418.0	Mm.246674	NM_007869	ENSMUSG00000026740	Dnajc1	4733401K02Rik|AA960110|D230036H06Rik|Dnajl1|ERdj1|ERj1p|MTJ1	DnaJ heat shock protein family (Hsp40) member C1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-65091698-4	chr5	65091613	65091813	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15855.0	NM_001347355	71778.0	Mm.10281	NM_175174	ENSMUSG00000054920	Klhl5	1300013C10Rik	kelch-like 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-103402580-2	chr15	103402480	103402680	+	842.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028797, intron 8 of 8)	intron (NM_028797, intron 8 of 8)	27847.0	NM_028797	74174.0	Mm.325325	NM_028797	ENSMUSG00000022487	Gtsf1	1700006H03Rik|Cue110	gametocyte specific factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24526586-1	chr17	24526486	24526686	+	756.666687	f0_balb.idr	intron (NM_001172113, intron 1 of 20)	intron (NM_001172113, intron 1 of 20)	1352.0	NM_153792	224619.0	Mm.275150	NM_153792	ENSMUSG00000052752	Traf7	RFWD1	TNF receptor-associated factor 7	protein-coding	-0.381534712270828	-0.367743029701211	-0.372254425981719	-0.37573968752492	0.206881371801117	-0.366727000965275	0.32919362941858	-0.375130526097395	3.71399911208044	0.152111135589846	1
Merged-chr2-170173920-3	chr2	170173843	170174043	+	641.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31268.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-110889658-2	chr2	110889558	110889758	+	632.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355246, intron 1 of 3)	RMER13B|LTR|ERVK	-49599.0	NM_001355244	228432.0	Mm.483325	NM_001081556	ENSMUSG00000074968	Ano3	AI838058|B230324K02Rik|Tmem16c	anoctamin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-59670059-2	chr2	59669959	59670159	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290659, intron 1 of 25)	intron (NM_001290659, intron 1 of 25)	23290.0	NM_001290659	66860.0	Mm.27917	NM_198294	ENSMUSG00000035168	Tanc1	1200003E16Rik|Tanc|mKIAA1728	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-52160243-4	chr6	52160146	52160346	+	984.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131181, intron 1 of 1)	intron (NR_131181, intron 1 of 1)	1722.0	NR_131181	105242658.0	Mm.372521	NR_131181	ENSMUSG00000087658	Hotairm1	Gm15051|Hoxaas1	Hoxa transcript antisense RNA, myeloid-specific 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-87284543-2	chr17	87284443	87284643	+	881.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028639, intron 1 of 19)	intron (NM_028639, intron 1 of 19)	1657.0	NM_028639	225049.0	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-76423257-1	chr11	76423157	76423357	+	591.0	f1_c57bl6.idr	intron (NM_001346670, intron 18 of 21)	intron (NM_001346670, intron 18 of 21)	16114.0	NM_019818	56322.0	Mm.18803	NM_019818	ENSMUSG00000020843	Timm22	Tim22	translocase of inner mitochondrial membrane 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117663298-2	chr11	117663198	117663398	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198022, intron 1 of 21)	U3|snRNA|snRNA	9009.0	NM_198022	217351.0	Mm.40272	NM_198022	ENSMUSG00000025571	Tnrc6c	9930033H14Rik|mKIAA1582	trinucleotide repeat containing 6C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-77238804-4	chr2	77238713	77238913	+	990.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175465, intron 3 of 17)	intron (NM_175465, intron 3 of 17)	41779.0	NM_175465	228071.0	Mm.27120	NM_175465	ENSMUSG00000042272	Sestd1	1500031J16Rik|A930010O20|Solo/Trio8	SEC14 and spectrin domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-80014016-1	chr12	80013916	80014116	+	584.0	f0_balb.idr	Intergenic	Intergenic	-77752.0	NR_131074	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27755614-2	chr2	27755514	27755714	+	598.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290481, intron 7 of 9)	intron (NM_001290481, intron 7 of 9)	45031.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-110673229-1	chr9	110673129	110673329	+	576.0	f1_balb.idr	intron (NM_028312, intron 1 of 6)	intron (NM_028312, intron 1 of 6)	16726.0	NM_028312	72654.0	Mm.249115	NM_028312	ENSMUSG00000019659	Ccdc12	2700094L05Rik|C76605	coiled-coil domain containing 12	protein-coding	-0.654219725696076	-0.642063917070215	-0.646034897392577	-0.649106238974602	-0.65345788289515	0.129288103328506	-0.64515811339449	-0.32101224334319	3.46397389919965	0.209431550983776	1
Merged-chr1-191163653-3	chr1	191163543	191163743	+	928.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001109759, exon 1 of 1)	exon (NM_001109759, exon 1 of 1)	1174.0	NM_001109759	619288.0	Mm.61148	NM_001109759	ENSMUSG00000091017	Fam71a	4933417M04Rik|GARI-L4	family with sequence similarity 71, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5615611-2	chr19	5615511	5615711	+	546.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5517.0	NM_178637	81601.0	Mm.228930	NM_178637	ENSMUSG00000024926	Kat5	AI839539|CPLA2|Htatip|Htatip1|PLIP|Tip55|Tip60	K(lysine) acetyltransferase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-17034304-2	chr6	17034204	17034404	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-30845.0	NM_207176	21753.0	Mm.436548	NM_011570	ENSMUSG00000029552	Tes	D6Ertd352e|TESS|Tes1|Tes2|testin2	testis derived transcript	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-103968477-4	chr3	103968383	103968583	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_030676)	promoter-TSS (NR_030676)	-167.0	NR_030676	100125931.0	Mm.400392	NR_030676	ENSMUSG00000089998	Phtf1os	A130049A11Rik	putative homeodomain transcription factor 1, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-25813763-3	chr17	25813668	25813868	+	960.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164225, intron 1 of 5)	intron (NM_001164225, intron 1 of 5)	4683.0	NM_001164225	214931.0	Mm.152289	NM_001164225	ENSMUSG00000025738	Fbxl16	BC042620|Scirr1	F-box and leucine-rich repeat protein 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-57181379-4	chr16	57181279	57181479	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026254, intron 14 of 17)	intron (NM_026254, intron 14 of 17)	-14047.0	NM_023175	52633.0	Mm.383203	NM_023175	ENSMUSG00000022751	Nit2	1190017B19Rik|D16Ertd502e	nitrilase family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3320940-2	chr19	3320840	3321040	+	888.599976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2361.0	NM_013495	12894.0	Mm.18522	NM_013495	ENSMUSG00000024900	Cpt1a	C730027G07|CPTI|Cpt1	carnitine palmitoyltransferase 1a, liver	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10018192-4	chr19	10018095	10018295	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347430)	promoter-TSS (NM_001347430)	1.0	NM_001347430	74760.0	Mm.281969	NM_144538	ENSMUSG00000024663	Rab3il1	1200014K04Rik|AI115013|C76746|Rab3ail1	RAB3A interacting protein (rabin3)-like 1	protein-coding	5.04647367484313	4.79616066049078	5.28855705241038	4.37020826110114	4.7084158995553	5.28201666924849	4.98360977560706	4.5453853093917	-0.019591881549322	0.955730320797608	0.998431161219273
Merged-chr12-84768331-2	chr12	84768231	84768431	+	787.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_023409, intron 1 of 3)	MLTR14|LTR|ERV1	4781.0	NM_023409	67963.0	Mm.282556	NM_023409	ENSMUSG00000021242	Npc2	2700012J19Rik|AA408070|AU045843|HE1	NPC intracellular cholesterol transporter 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-94262382-2	chr2	94262282	94262482	+	544.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_030431)	promoter-TSS (NR_030431)	-983.0	NR_030431	735259.0		NR_030431	ENSMUSG00000076335	Mir670	Mirn670|mir-670|mmu-mir-670	microRNA 670	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-119357518-4	chr9	119357406	119357606	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001199568, exon 1 of 20)	5' UTR (NM_001199568, exon 1 of 20)	125.0	NM_001359699	102448.0	Mm.219497	NM_001033209	ENSMUSG00000035769	Xylb	AI132223|AI327421	xylulokinase homolog (H. influenzae)	protein-coding	5.0494139373516	4.43148797931783	5.72064660660298	4.16272021149726	4.09611027436749	5.54258341673599	3.35449244452516	5.38189549959391	-0.137665699766497	0.781131436038376	0.998431161219273
Merged-chr5-122766219-2	chr5	122766119	122766319	+	851.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199676, intron 1 of 16)	B4|SINE|B4	13191.0	NM_001199676	207565.0	Mm.289237	NM_145358	ENSMUSG00000029471	Camkk2	6330570N16Rik|AW061083|mKIAA0787	calcium/calmodulin-dependent protein kinase kinase 2, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36560392-4	chr18	36560283	36560483	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175375)	promoter-TSS (NM_175375)	-220.0	NM_175375	108857.0	Mm.482287	NM_175375	ENSMUSG00000024483	Ankhd1	1110004O12Rik|4933432B13Rik|9130019P20Rik|A530027J04Rik|A630021B20Rik|AA571404|Mask|mFLJ00246|mKIAA1085	ankyrin repeat and KH domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-154094483-4	chr1	154094377	154094577	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-106710.0	NM_001204908	100503355.0	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	Gm10178|Gm203	zinc finger protein 648	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28518959-2	chr17	28518859	28519059	+	643.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11902.0	NM_026290	67645.0	Mm.46170	NM_026290	ENSMUSG00000024223	Armc12	4930511I11Rik|AV041658	armadillo repeat containing 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19876319-6	chr7	19876217	19876417	+	783.266663	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177036, exon 7 of 7)	3' UTR (NM_177036, exon 7 of 7)	11648.0	NM_177036	319930.0	Mm.215839	NM_177036	ENSMUSG00000049848	Ceacam19	C130022P09Rik|CEAL1	carcinoembryonic antigen-related cell adhesion molecule 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-84756774-2	chr12	84756674	84756874	+	699.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_023409, exon 4 of 4)	3' UTR (NM_023409, exon 4 of 4)	16338.0	NM_023409	67963.0	Mm.282556	NM_023409	ENSMUSG00000021242	Npc2	2700012J19Rik|AA408070|AU045843|HE1	NPC intracellular cholesterol transporter 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-30938844-4	chr16	30938744	30938944	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	142588.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-36020212-2	chr4	36020112	36020312	+	819.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166000, intron 7 of 8)	L1Md_F|LINE|L1	-175008.0	NM_175516	242384.0	Mm.132507	NM_175516	ENSMUSG00000045083	Lingo2	B230217C06Rik|Lern3|Lrrn6c	leucine rich repeat and Ig domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64315315-2	chr5	64315214	64315414	+	616.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 12 of 18)	intron (NM_001289514, intron 12 of 18)	84957.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	1.03639945209992	1.32047564569226	0.954771975039833	1.72515667871206	1.55859869602989	1.17529411433644	0.752551005853083	0.741379464797248	-0.731916801997082	0.60241689044311	0.973565005745828
Merged-chr1-171887303-4	chr1	171887186	171887386	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289470, intron 8 of 8)	intron (NM_001289470, intron 8 of 8)	-30176.0	NM_030710	30925.0	Mm.486404	NM_030710	ENSMUSG00000015314	Slamf6	KAL1|KAL1b|Ly108|NTB-A|NTBA|SF2000	SLAM family member 6	protein-coding	3.15676569978546	3.10588401092522	2.68643861470596	4.42241541282768	3.70931440647043	3.26381396972738	4.13565711103938	5.04067499378589	0.944836030344214	0.118127657960138	0.539169023664366
Merged-chr8-92852742-2	chr8	92852642	92852842	+	955.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008610, exon 13 of 13)	3' UTR (NM_008610, exon 13 of 13)	-2591.0	NM_173014	270084.0	Mm.21463	NM_173014	ENSMUSG00000033192	Lpcat2	1-AGPAT 11|A330042H22|Aytl1|Aytl1a|lpafat1|lysoPAFAT|lysoPAFAT/LPCAT2	lysophosphatidylcholine acyltransferase 2	protein-coding	0.967805697556674	0.571304055298728	1.07253273508483	0.552043088351043	1.18678070323622	0.573722575561974	1.59883367310822	0.744459450832069	1.29370642898215	0.414811410239741	0.896676881011847
Merged-chr16-22545255-4	chr16	22545171	22545371	+	924.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346673, intron 19 of 23)	intron (NM_001346673, intron 19 of 23)	-13087.0	NR_106170	102465887.0		NR_106170	ENSMUSG00000099071	Mir8095	Gm27566|mmu-mir-8095	microRNA 8095	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-154597152-4	chr3	154597067	154597267	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001168358)	promoter-TSS (NM_001168358)	-30.0	NM_001357673	12972.0	Mm.374855	NM_009968	ENSMUSG00000028199	Cryz	Sez9	crystallin, zeta	protein-coding	4.65025222179665	4.81908219519298	4.71566903853632	5.2780845184044	4.72081772379491	5.22089037921935	5.03400375965439	3.48154919539822	-0.168963509358951	0.677915948369556	0.994818437932722
Merged-chr10-67010626-2	chr10	67010526	67010726	+	588.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001204915, exon 9 of 9)	3' UTR (NM_001204915, exon 9 of 9)	5551.0	NR_110511	102634101.0	Mm.445258	NR_110511	ENSMUSG00000112925	Gm31763	-	predicted gene, 31763	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-41283367-2	chr13	41283267	41283467	+	980.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33523.0	NM_001135577	108934.0	Mm.38578	NM_001135577	ENSMUSG00000091264	Smim13	2900036K02Rik	small integral membrane protein 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-41402029-4	chr3	41401932	41402132	+	912.366699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	91167.0	NR_040385	78706.0	Mm.366094	NR_040385	ENSMUSG00000097639	Platr4	C430002E04Rik	pluripotency associated transcript 4	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-63092563-2	chr9	63092463	63092663	+	683.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54417.0	NM_172446	207667.0	Mm.36349	NM_172446	ENSMUSG00000022245	Skor1	AV273001|C230094B15Rik|Corl1|Lbxcor1	SKI family transcriptional corepressor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-92081224-7	chr3	92081029	92081229	+	896.719055	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008508, exon 2 of 2)	exon (NM_008508, exon 2 of 2)	2013.0	NM_008508	16939.0	Mm.1121	NM_008508	ENSMUSG00000043165	Lor	AI036317|S77319	loricrin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-35694471-1	chr12	35694371	35694571	+	603.0	f1_balb.idr	intron (NR_045050, intron 2 of 4)	MLT1J|LTR|ERVL-MaLR	647.0	NR_045050	71581.0	Mm.100110	NR_045050	ENSMUSG00000113985	9130015A21Rik	100043575|Gm4527	RIKEN cDNA 9130015A21 gene	ncRNA	0.737179363412142	0.363788135830567	0.355884518328283	0.671039774548391	1.30771322820244	0.57271752676345	0.357631770225182	0.676035939460488	1.3746237671093	0.43034964010849	1
Merged-chr10-81291231-2	chr10	81291131	81291331	+	794.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013769)	promoter-TSS (NM_013769)	36.0	NM_013769	27375.0	Mm.27984	NM_013769	ENSMUSG00000034917	Tjp3	-	tight junction protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-93383114-2	chr15	93383014	93383214	+	784.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15220.0	NM_001347097	67197.0	Mm.293181	NM_026025	ENSMUSG00000022635	Zcrb1	2700088M22Rik|Madp-1	zinc finger CCHC-type and RNA binding motif 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-142563684-3	chr3	142563584	142563784	+	764.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355403, intron 3 of 11)	intron (NM_001355403, intron 3 of 11)	3328.0	NM_001289493	55932.0	Mm.439718	NM_018734	ENSMUSG00000028268	Gbp3	AW228655|GBP-3|GBP-4|Gbp4	guanylate binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-41331815-4	chr13	41331731	41331931	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111324, intron 3 of 7)	intron (NM_001111324, intron 3 of 7)	27170.0	NM_017464	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-51147090-3	chr2	51147001	51147201	+	991.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028810, intron 2 of 4)	intron (NM_028810, intron 2 of 4)	2010.0	NM_028810	74194.0	Mm.46497	NM_028810	ENSMUSG00000017144	Rnd3	2610017M01Rik|AI661404|Arhe|Rhoe	Rho family GTPase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-155476516-3	chr1	155476445	155476645	+	896.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50566.0	NR_132128	433367.0	Mm.359304	NR_132128	ENSMUSG00000073535	Gm5532	EG433367	predicted gene 5532	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-35142877-2	chr7	35142777	35142977	+	941.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23584.0	NM_007678	12606.0	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-87987146-3	chr11	87987078	87987278	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001168472)	promoter-TSS (NM_001168472)	355.0	NM_026556	68097.0	Mm.246436	NM_026556	ENSMUSG00000020483	Dynll2	1700064A15Rik|6720463E02Rik|C87222|DLC8|DLC8b|Dlc2	dynein light chain LC8-type 2	protein-coding	3.36910298685882	3.12688621779998	4.06393694989795	3.31968293446443	2.67409322345318	2.54319738557584	4.32119838787561	3.15561398785493	-0.19950006766364	0.757586409597404	0.998431161219273
Merged-chr1-184063182-4	chr1	184063092	184063292	+	716.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022019, intron 2 of 3)	intron (NM_022019, intron 2 of 3)	28811.0	NM_022019	63953.0	Mm.404024	NM_022019	ENSMUSG00000039384	Dusp10	2610306G15Rik|AI158871|MKP-5|MKP5	dual specificity phosphatase 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-136805085-4	chr6	136804994	136805194	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175652)	promoter-TSS (NM_175652)	-663.0	NM_175652	320332.0	Mm.246720	NM_175652	ENSMUSG00000096010	Hist4h4	B130044J01Rik	histone cluster 4, H4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-12993836-3	chr14	12993741	12993941	+	864.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-170762.0	NM_001359919	27062.0	Mm.260881	NM_012061	ENSMUSG00000054423	Cadps	AU067781|CAPS|CAPS1|mKIAA1121	Ca2+-dependent secretion activator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-49001743-3	chr7	49001663	49001863	+	803.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111016, intron 2 of 38)	intron (NM_001111016, intron 2 of 38)	42690.0	NM_001111016	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-42080163-4	chr19	42080080	42080280	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198108, intron 1 of 4)	MLT1H|LTR|ERVL-MaLR	6190.0	NM_198108	226123.0	Mm.259441	NM_198108	ENSMUSG00000049670	Morn4	-	MORN repeat containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-34989486-4	chr18	34989374	34989574	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35123.0	NM_010481	15526.0	Mm.209419	NM_010481	ENSMUSG00000024359	Hspa9	74kDa|Csa|Grp75|Hsc74|Hsp74|Hsp74a|Hspa9a|Mortalin|Mot-2|Mot2|Mthsp70|Pbp74	heat shock protein 9	protein-coding	4.46908547105068	4.0571038399883	3.37951551504008	4.2946916724962	4.98478264685483	4.00885687428163	4.33586489810216	4.21029944886246	0.434860448627592	0.332517810111798	0.833345452772687
Merged-chr8-70620927-2	chr8	70620827	70621027	+	863.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_153074)	TTS (NM_153074)	4083.0	NM_153074	211228.0	Mm.132939	NM_153074	ENSMUSG00000049988	Lrrc25	Mapa	leucine rich repeat containing 25	protein-coding	3.17616838456885	3.47460143297285	3.84503599072873	3.1564993952359	3.76472552718686	3.77503943073529	3.87384269603918	4.41591753110772	0.80602648035415	0.11060028305819	0.520793640554224
Merged-chr18-77705002-3	chr18	77704870	77705070	+	702.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178670, intron 1 of 4)	intron (NM_178670, intron 1 of 4)	9040.0	NM_178670	212163.0	Mm.23293	NM_178670	ENSMUSG00000047466	8030462N17Rik	Akd2|Ark2N	RIKEN cDNA 8030462N17 gene	protein-coding	-1.69986312423686	-1.81314243252593	-1.82225744210362	-1.82974478236248	-1.84116796638235	-1.66774645889968	-1.82019400373055	-1.82840455203593	0.0376840119903864	0.991491645451152	1
Merged-chr3-47951383-2	chr3	47951283	47951483	+	600.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	75376.0	NR_040408	666202.0	Mm.465057	NR_040408	ENSMUSG00000103257	Gm7977	EG666202	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-86962557-4	chr17	86962456	86962656	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145491)	promoter-TSS (NM_145491)	-555.0	NM_145491	104215.0	Mm.826	NM_145491	ENSMUSG00000024143	Rhoq	Arhq|TC10A|Tc10	ras homolog family member Q	protein-coding	4.17698475355195	3.71226000324548	3.98925293323205	4.90979250930957	4.49536377246478	3.92161164856266	4.08797544717925	4.25787745362331	-0.0918625890643742	0.836523835985535	0.998431161219273
Merged-chr19-26565015-2	chr19	26564915	26565115	+	722.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40145.0	NM_011416	67155.0	Mm.491146	NM_011416	ENSMUSG00000024921	Smarca2	2610209L14Rik|SNF2alpha|Snf2l2|brahma|brm	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-95229626-3	chr10	95229527	95229727	+	748.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001330138, intron 2 of 2)	intron (NM_001330138, intron 2 of 2)	-83802.0	NR_131146	628062.0		NR_131146	ENSMUSG00000112481	Gm29684	-	predicted gene, 29684	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-17696445-3	chr13	17696372	17696572	+	712.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025479, intron 1 of 1)	intron (NM_025479, intron 1 of 1)	1059.0	NM_025479	66308.0	Mm.291109	NM_025479	ENSMUSG00000012429	Mplkip	2810021B07Rik|C330007M08Rik|Ttdn1	M-phase specific PLK1 intereacting protein	protein-coding	0.306349110903477	0.813714257925543	0.960746460081477	0.163787061761588	0.310936836113981	0.177438588121346	0.3602777434764	0.164712544069182	-2.57332374466417	0.182235205877265	1
Merged-chr2-101678434-4	chr2	101678340	101678540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009424)	promoter-TSS (NM_009424)	20.0	NM_001303273	22034.0	Mm.292729	NM_009424	ENSMUSG00000027164	Traf6	2310003F17Rik|AI851288|C630032O20Rik	TNF receptor-associated factor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-50038443-2	chr6	50038343	50038543	+	810.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-71798.0	NM_019939	56524.0	Mm.41288	NM_008016	ENSMUSG00000038388	Mpp6	P55t|Pals2	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-100425157-2	chr5	100425144	100425344	+	737.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_034038, intron 3 of 4)	MTA_Mm|LTR|ERVL-MaLR	4291.0	NR_034038	100503199.0	Mm.392282	NR_034038	ENSMUSG00000097772	5430416N02Rik	100041797|Adapt33|Gm3514	RIKEN cDNA 5430416N02 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69245878-4	chr11	69245803	69246003	+	960.30835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8881.0	NM_008192	14919.0	Mm.291816	NM_008192	ENSMUSG00000020890	Gucy2e	GC-E|GC1|ROS-GC1	guanylate cyclase 2e	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36679406-4	chr18	36679302	36679502	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357512)	promoter-TSS (NM_001357512)	-36.0	NM_146085	225372.0	Mm.89673	NM_146085	ENSMUSG00000006050	Apbb3	Fe65l2|Rirl2|TR2S	amyloid beta (A4) precursor protein-binding, family B, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-77358536-3	chr5	77358432	77358632	+	821.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008048, intron 1 of 4)	intron (NM_008048, intron 1 of 4)	48048.0	NM_153798	231329.0	Mm.273217	NM_153798	ENSMUSG00000029250	Polr2b	Pol2rb|Rpb140|Rpb2	polymerase (RNA) II (DNA directed) polypeptide B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-78489199-4	chr1	78489123	78489323	+	974.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_102757)	promoter-TSS (NR_102757)	-326.0	NM_011811	23874.0	Mm.17898	NM_011811	ENSMUSG00000026245	Farsb	C76708|Farsa|Farsl|Farslb|Frsb	phenylalanyl-tRNA synthetase, beta subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-46106396-6	chr9	46106273	46106473	+	807.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027498, intron 1 of 24)	intron (NM_027498, intron 1 of 24)	93553.0	NM_027498	70661.0	Mm.219459	NM_027498	ENSMUSG00000034135	Sik3	5730525O22Rik|9030204A07Rik|AI447252|AI846254|AI849445|Qsk|SIK-3|mKIAA0999	SIK family kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-33379618-2	chr5	33379518	33379718	+	812.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_153108, intron 2 of 12)	intron (NR_153108, intron 2 of 12)	922.0	NM_001081101	71101.0	Mm.132178	NM_027674	ENSMUSG00000037355	Uvssa	4933407H18Rik|D330017J19Rik|Kiaa1530|mKIAA1530	UV stimulated scaffold protein A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44004408-2	chr7	44004309	44004509	+	647.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8269.0	NM_010644	16618.0	Mm.439663	NM_010644	ENSMUSG00000053719	Klk1b26	Egfbp2|Klk26|PRECE-2|mGK-26|mGK26	kallikrein 1-related petidase b26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-5208009-4	chr6	5207918	5208118	+	990.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14072.0	NM_011134	18979.0	Mm.237657	NM_011134	ENSMUSG00000002588	Pon1	Pon	paraoxonase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4861636-2	chr16	4861536	4861736	+	862.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030192, intron 11 of 15)	intron (NM_030192, intron 11 of 15)	18215.0	NM_145359	207740.0	Mm.268895	NM_145359	ENSMUSG00000039568	Ubald1	1500031H01Rik|BC013706|Fam100a	UBA-like domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-27672347-4	chr15	27672271	27672471	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198301, intron 1 of 6)	intron (NM_198301, intron 1 of 6)	9171.0	NM_001242424	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3431178-2	chr12	3431078	3431278	+	691.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001270988, intron 1 of 11)	B3A|SINE|B2	4321.0	NM_172421	75302.0	Mm.120475	NM_172421	ENSMUSG00000037486	Asxl2	4930556B16Rik|mKIAA1685	additional sex combs like 2, transcriptional regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-78573930-2	chr10	78573830	78574030	+	745.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173751)	promoter-TSS (NM_173751)	-570.0	NM_173751	216136.0	Mm.2644	NM_173751	ENSMUSG00000032763	Ilvbl	5830463I21|AI415009	ilvB (bacterial acetolactate synthase)-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-11864630-2	chr18	11864575	11864775	+	600.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_022021, intron 1 of 8)	intron (NM_022021, intron 1 of 8)	-24237.0	NR_035447	100316686.0		NR_035447	ENSMUSG00000084565	Mir1901	Mirn1901|mmu-mir-1901	microRNA 1901	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-110023915-2	chr5	110023815	110024015	+	653.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR46B|LTR|ERVK	27388.0	NM_145563	69504.0	Mm.441438	NM_145563	ENSMUSG00000066613	Zfp932	2310001H12Rik|Znf431	zinc finger protein 932	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-82764320-4	chr6	82764210	82764410	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013820, intron 1 of 17)	intron (NM_013820, intron 1 of 17)	10144.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	7.59782367175177	7.84100432970153	7.99567208867755	7.7480746348546	7.58929756161173	7.82998626407367	7.71792131192419	7.71406007328724	-0.0901643164920114	0.519729712025569	0.947641799425091
Merged-chr8-105260700-2	chr8	105260600	105260800	+	680.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033161, intron 1 of 4)	intron (NM_001033161, intron 1 of 4)	3894.0	NM_001033161	71609.0	Mm.264255	NM_001033161	ENSMUSG00000031887	Tradd	9130005N23Rik|AA930854	TNFRSF1A-associated via death domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-142081214-5	chr4	142081132	142081332	+	838.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145402, intron 1 of 2)	GC_rich|Low_complexity|Low_complexity	-3066.0	NR_027137	100038693.0	Mm.402714	NR_027137	ENSMUSG00000073728	Tmem51os1	Gm10565|Tmem51as1	Tmem51 opposite strand 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-78596613-2	chr9	78596516	78596716	+	659.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-8571.0	NM_001276452	235504.0	Mm.46932	NM_172773	ENSMUSG00000049624	Slc17a5	4631416G20Rik|4732491M05|AST|ISSD|NSD|SD|SIALIN|SIASD|SLD	solute carrier family 17 (anion/sugar transporter), member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166070537-2	chr2	166070437	166070637	+	657.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008679, exon 23 of 23)	3' UTR (NM_008679, exon 23 of 23)	77900.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-157367006-4	chr2	157366918	157367118	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026968)	promoter-TSS (NM_026968)	-576.0	NM_026968	69161.0	Mm.228619	NM_026968	ENSMUSG00000063019	Manbal	1810024K12Rik|AI836500	mannosidase, beta A, lysosomal-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-78528736-2	chr3	78528636	78528836	+	669.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	616151.0	NM_001310536	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-22772787-2	chr2	22772687	22772887	+	820.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1540.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-132155972-4	chr1	132155872	132156072	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16287.0	NM_008795	18557.0	Mm.28130	NM_008795	ENSMUSG00000026437	Cdk18	AA682070|Ctk18|Pctk3	cyclin-dependent kinase 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-123750362-4	chr4	123750269	123750469	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023423)	promoter-TSS (NM_023423)	-70.0	NM_023423	68050.0	Mm.27903	NM_023423	ENSMUSG00000023075	Akirin1	6330407G11Rik	akirin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-57533396-2	chr3	57533296	57533496	+	653.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133784, intron 2 of 6)	RMER19B|LTR|ERVK	42480.0	NM_133784	97064.0	Mm.405029	NM_133784	ENSMUSG00000027803	Wwtr1	2310058J06Rik|2610021I22Rik|C78399|Taz	WW domain containing transcription regulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-7569866-2	chr19	7569766	7569966	+	895.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_001362425, intron 2 of 4)	intron (NM_001362425, intron 2 of 4)	12381.0	NM_001362425	225845.0	Mm.274810	NM_139269	ENSMUSG00000060675	Pla2g16	AdPLA|C78643|HRSL3|Hrasls3|Hrev107|MLP-3	phospholipase A2, group XVI	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-112106007-2	chr10	112105907	112106107	+	686.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347157, intron 4 of 5)	IAPEY4_LTR|LTR|ERVK	22653.0	NM_026223	67537.0	Mm.292351	NM_026223	ENSMUSG00000020214	Glipr1l2	4921508O11Rik	GLI pathogenesis-related 1 like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-53639026-4	chr8	53638922	53639122	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146208)	promoter-TSS (NM_146208)	43.0	NM_146208	234258.0	Mm.281749	NM_146208	ENSMUSG00000039396	Neil3	AI449477|BC034753|C85903	nei like 3 (E. coli)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-83932645-2	chr12	83932545	83932745	+	691.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10711.0	NR_073564	18222.0	Mm.4390	NM_010949	ENSMUSG00000021224	Numb	Nb	NUMB endocytic adaptor protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-146640795-4	chr6	146640714	146640914	+	842.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1765.0	NM_025315	108098.0	Mm.26212	NM_025315	ENSMUSG00000030291	Med21	0610007L03Rik|AI449604|D19234|D6Ertd782e|Srb7|Surb7	mediator complex subunit 21	protein-coding	1.9897699533454	1.684559691583	1.62955765113836	1.71221363380622	2.08106546919775	1.34200583030415	1.64184012442655	1.07272710472675	-0.49140125046874	0.662151507311396	0.991056031673253
Merged-chr2-181657648-2	chr2	181657548	181657748	+	595.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13992.0	NM_009236	20672.0	Mm.264904	NM_009236	ENSMUSG00000046470	Sox18	AI385749|Ra|Ragl	SRY (sex determining region Y)-box 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118295381-2	chr11	118295281	118295481	+	639.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5137.0	NM_001033528	72344.0	Mm.232293	NM_001033528	ENSMUSG00000033909	Usp36	2700002L06Rik|mKIAA1453	ubiquitin specific peptidase 36	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135230064-2	chr4	135229964	135230164	+	852.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013885, intron 2 of 5)	intron (NM_013885, intron 2 of 5)	42696.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-32976694-1	chr5	32976594	32976794	+	589.0	f0_balb.idr	intron (NM_001025426, intron 39 of 42)	intron (NM_001025426, intron 39 of 42)	-42122.0	NM_011738	22629.0	Mm.332314	NM_011738	ENSMUSG00000018965	Ywhah	-	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide	protein-coding	2.57561092484365	3.75243885558189	2.13823078778958	1.66846384799487	2.77473656868366	2.92446909022882	2.15592767835275	2.51665475453558	-0.321491775571909	0.699642536682721	0.998431161219273
Merged-chr6-83475690-4	chr6	83475581	83475781	+	993.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19289.0	NM_001347313	194388.0	Mm.211030	NM_183138	ENSMUSG00000034832	Tet3	B430006D22Rik|BC037432|D230004J03Rik	tet methylcytosine dioxygenase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-104968153-4	chr3	104968069	104968269	+	988.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-6460.0	NM_009520	22414.0	Mm.10740	NM_009520	ENSMUSG00000027840	Wnt2b	Wnt13	wingless-type MMTV integration site family, member 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-34167952-4	chr7	34167841	34168041	+	909.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016682, intron 1 of 16)	MIR|SINE|MIR	588.0	NM_016682	50995.0	Mm.27560	NM_016682	ENSMUSG00000052997	Uba2	AA986091|Arx|Sae2|UBA1|Ubl1a2|Uble1b	ubiquitin-like modifier activating enzyme 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80156188-4	chr10	80156087	80156287	+	818.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347117, intron 7 of 7)	intron (NM_001347117, intron 7 of 7)	6505.0	NM_001305799	59090.0	Mm.143813	NM_021565	ENSMUSG00000035621	Midn	3000003C15Rik	midnolin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-176797454-3	chr1	176797355	176797555	+	938.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001099637, intron 1 of 19)	intron (NM_001099637, intron 1 of 19)	9669.0	NM_001099637	545389.0	Mm.269991	NM_001024722	ENSMUSG00000057335	Cep170	4933426L22Rik|A330004A13Rik|AI195353	centrosomal protein 170	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-83131446-1	chr8	83131346	83131546	+	676.0	f0_balb.idr	Intergenic	Intergenic	-33906.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-11516287-7	chr2	11516199	11516399	+	908.301575	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177758, intron 1 of 14)	(CAGA)n|Simple_repeat|Simple_repeat	-14209.0	NM_001177757	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-49264039-4	chr6	49263946	49264146	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347209)	promoter-TSS (NM_001347209)	6.0	NM_001347209	101214.0	Mm.196598	NM_198102	ENSMUSG00000029817	Tra2a	1500010G04Rik|AL022798|G430041M01Rik|mAWMS1	transformer 2 alpha	protein-coding	2.06822355830719	2.4629162067918	1.43434936690535	2.95827139964047	2.83220529654507	2.1744184647064	2.5213409868677	2.90064903406731	0.587888538525575	0.494061871546348	0.935679785535167
Merged-chr8-122411306-2	chr8	122411206	122411406	+	838.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001310650, exon 13 of 18)	exon (NM_001310650, exon 13 of 18)	-10714.0	NM_145834	234836.0	Mm.222808	NM_145834	ENSMUSG00000046108	Il17c	IL-17C	interleukin 17C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-57557462-4	chr9	57557361	57557561	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3483.0	NM_022813	24044.0	Mm.286069	NM_022813	ENSMUSG00000040188	Scamp2	AI875466|Sc2	secretory carrier membrane protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-14815843-3	chr8	14815732	14815932	+	941.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172910, intron 9 of 15)	intron (NM_172910, intron 9 of 15)	-72704.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	0.970694742683195	1.089223228762	1.18641504333205	0.698536097955895	1.19980209651801	1.37150868577474	0.708749545610011	1.26979578550465	0.770991356198505	0.589678600121152	0.968907675192219
Merged-chr19-5693998-2	chr19	5693900	5694100	+	845.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_022012, intron 3 of 11)	L2c|LINE|L2	4869.0	NM_022012	26403.0	Mm.185026	NM_022012	ENSMUSG00000004054	Map3k11	2610017K16Rik|Mlk3|PTK1|SPRK	mitogen-activated protein kinase kinase kinase 11	protein-coding	0.711891853191964	2.0759579436314	0.526775084834998	0.510720469000676	0.487064030793451	2.09624046953765	0.531268195728257	1.15195133575554	0.261249886463606	0.869490877076576	0.998431161219273
Merged-chr13-113607594-3	chr13	113607489	113607689	+	675.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130796, intron 1 of 1)	intron (NM_130796, intron 1 of 1)	10975.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-45586123-2	chr17	45586023	45586223	+	618.833313	f1_balb.idr|f1_c57bl6.idr	exon (NM_001199116, exon 12 of 13)	exon (NM_001199116, exon 12 of 13)	6270.0	NM_022880	63959.0	Mm.29744	NM_022880	ENSMUSG00000023942	Slc29a1	1200014D21Rik|AA407560|ENT1	solute carrier family 29 (nucleoside transporters), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-178870142-1	chr2	178870042	178870242	+	561.0	f0_balb.idr	Intergenic	MTD|LTR|ERVL-MaLR	439627.0	NM_198656	381409.0	Mm.330860	NM_198656	ENSMUSG00000039155	Cdh26	Gm1010	cadherin-like 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153167931-2	chr2	153167831	153168031	+	786.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133847, intron 1 of 17)	intron (NM_133847, intron 1 of 17)	6630.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-142441483-3	chr5	142441335	142441535	+	918.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199068, intron 2 of 8)	intron (NM_199068, intron 2 of 8)	-22496.0	NM_172725	231855.0	Mm.78250	NM_172725	ENSMUSG00000039623	Ap5z1	C330006K01Rik	adaptor-related protein complex 5, zeta 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-54904305-2	chr1	54904205	54904405	+	901.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081433, intron 1 of 27)	Lx5c|LINE|L1	22082.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-80084072-3	chr15	80084015	80084215	+	775.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013762)	promoter-TSS (NM_013762)	-709.0	NM_013762	27367.0	Mm.290771	NM_013762	ENSMUSG00000060036	Rpl3	F2|J1	ribosomal protein L3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-49575748-2	chr15	49575648	49575848	+	584.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-783759.0	NM_001081391	239420.0	Mm.309363	NM_001081391	ENSMUSG00000022311	Csmd3	4930500N14Rik|mKIAA1894	CUB and Sushi multiple domains 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122914097-2	chr8	122913997	122914197	+	585.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 3 of 12)	intron (NM_001081379, intron 3 of 12)	65723.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-29465158-2	chr19	29465058	29465258	+	823.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021396, intron 5 of 5)	RMER1A|Other|Other	54239.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-70838652-2	chr6	70838552	70838752	+	667.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-5863.0	NM_010121	13666.0	Mm.247167	NM_010121	ENSMUSG00000031668	Eif2ak3	Pek|Perk	eukaryotic translation initiation factor 2 alpha kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-134106941-4	chr1	134106833	134107033	+	859.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4309.0	NM_001284525	71884.0	Mm.328268	NM_027979	ENSMUSG00000026450	Chit1	2300002L19Rik	chitinase 1 (chitotriosidase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-55430771-4	chr13	55430682	55430882	+	962.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-3978.0	NM_021489	58992.0	Mm.42224	NM_021489	ENSMUSG00000021492	F12	FXII|HAF	coagulation factor XII (Hageman factor)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-54426331-4	chr14	54426197	54426397	+	966.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026851)	promoter-TSS (NM_026851)	-612.0	NM_026851	68836.0	Mm.248163	NM_026851	ENSMUSG00000010406	Mrpl52	1110047B07Rik	mitochondrial ribosomal protein L52	protein-coding	-1.52696403314699	-1.49523967873556	-1.5048333853602	-1.51271394162622	-1.52473704212565	-1.49316068248889	-1.50266158046844	-1.06847079017215	2.01069003169785	0.564432837776867	1
Merged-chr16-13832528-2	chr16	13832428	13832628	+	617.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346110, intron 7 of 7)	intron (NM_001346110, intron 7 of 7)	13277.0	NM_001346111	18203.0	Mm.380410	NM_010946	ENSMUSG00000022681	Ntan1	PNAA|PNAD	N-terminal Asn amidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89867707-2	chr3	89867607	89867807	+	604.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36337.0	NM_172530	214547.0	Mm.225	NM_172530	ENSMUSG00000046280	She	9430022A14	src homology 2 domain-containing transforming protein E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-9955057-4	chr19	9954962	9955162	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25538.0	NR_073181	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-44384386-3	chr10	44384284	44384484	+	928.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24708.0	NR_035450	100316688.0		NR_035450	ENSMUSG00000089260	Mir1929	mir-1929|mmu-mir-1929	microRNA 1929	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-142365853-2	chr5	142365753	142365953	+	757.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35644.0	NM_199068	17425.0	Mm.24214	NM_010812	ENSMUSG00000056493	Foxk1	A630048H08Rik|AI463295|Gm10868|Mnf	forkhead box K1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56265119-6	chr17	56264949	56265149	+	962.305542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8256.0	NM_010192	14154.0	Mm.290813	NM_010192	ENSMUSG00000043683	Fem1a	AW611390|Fem1aa	feminization 1 homolog a (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139024067-4	chr5	139023980	139024180	+	803.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359099, intron 9 of 10)	intron (NM_001359099, intron 9 of 10)	-29127.0	NM_008808	18590.0	Mm.2675	NM_008808	ENSMUSG00000025856	Pdgfa	-	platelet derived growth factor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-40661282-4	chr19	40661183	40661383	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009848, intron 1 of 9)	intron (NM_009848, intron 1 of 9)	1513.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-24630415-4	chr12	24630304	24630504	+	858.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20967.0	NM_178357	194655.0	Mm.9616	NM_178357	ENSMUSG00000020653	Klf11	9830142A17|D12Ertd427e|Tieg2|Tieg2b|Tieg3	Kruppel-like factor 11	protein-coding	-2.05752322593321	-2.15521190974092	-2.16307242109104	-2.16952927915413	-2.17938029103484	-2.15350850414045	-2.16129297361887	-2.16837350464794	-0.683654500252594	0.846597994014493	1
Merged-chr15-93403838-2	chr15	93403738	93403938	+	647.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358749, intron 2 of 8)	B3|SINE|B2	5374.0	NM_001285863	223828.0	Mm.74208	NM_146062	ENSMUSG00000036167	Pphln1	CR|HSPC206|HSPC232	periphilin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-119047412-3	chr10	119047344	119047544	+	965.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152787, intron 2 of 3)	MTC|LTR|ERVL-MaLR	3055.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-47072743-4	chr7	47072646	47072846	+	987.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10478.0	NR_106023	102465639.0		NR_106023	ENSMUSG00000098960	Mir7056	Gm27696|mmu-mir-7056	microRNA 7056	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21462794-2	chr9	21462694	21462894	+	705.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357721, intron 2 of 19)	PB1D7|SINE|Alu	33770.0	NR_029585	387194.0		NR_029585	ENSMUSG00000065547	Mir199a-1	Mirn199|Mirn199a-1|mir-199a-1	microRNA 199a-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-60916358-4	chr1	60916255	60916455	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001281976)	TTS (NM_001281976)	7330.0	NM_001281976	12477.0	Mm.390	NM_009843	ENSMUSG00000026011	Ctla4	Cd152|Ctla-4|Ly-56	cytotoxic T-lymphocyte-associated protein 4	protein-coding	1.73227769919139	1.45527653812917	1.98330430090401	2.26519304845194	1.74533681870307	1.94370437325791	1.43020926754242	1.82693972339693	-0.483365113316222	0.635568546469224	0.982417279970648
Merged-chr9-69290468-3	chr9	69290364	69290564	+	916.8666380000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289916, intron 1 of 9)	CpG	623.0	NM_001289916	19883.0	Mm.378450	NM_013646	ENSMUSG00000032238	Rora	9530021D13Rik|Nr1f1|ROR1|ROR2|ROR3|nmf267|sg|staggerer|tmgc26	RAR-related orphan receptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-133960876-4	chr6	133960790	133960990	+	922.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74810.0	NM_001303102	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	0.447018756397641	0.688119318492399	0.311353317289961	0.305526306841182	0.894445021710865	0.526171865706725	1.11711004197607	0.306546012894581	1.94199945937351	0.282555793594917	1
Merged-chr2-152950885-2	chr2	152950785	152950985	+	606.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159376, intron 1 of 6)	intron (NM_001159376, intron 1 of 6)	520.0	NM_145744	252864.0	Mm.330671	NM_145744	ENSMUSG00000042662	Dusp15	AI851682|LMW-DSP10|T-DSP10	dual specificity phosphatase-like 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-34081315-3	chr4	34081192	34081392	+	963.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31225.0	NM_026293	67652.0	Mm.55848	NM_026293	ENSMUSG00000028264	Spaca1	1700124L11Rik|4930540L03Rik	sperm acrosome associated 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83427284-2	chr11	83427184	83427384	+	600.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001013759, exon 2 of 6)	exon (NM_001013759, exon 2 of 6)	2237.0	NM_001013759	237891.0	Mm.340523	NM_001013759	ENSMUSG00000020686	Gas2l2	-	growth arrest-specific 2 like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71545709-2	chr8	71545629	71545829	+	547.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028617, intron 5 of 8)	intron (NM_028617, intron 5 of 8)	2799.0	NM_028617	73711.0	Mm.307770	NM_028617	ENSMUSG00000031813	Mvb12a	1110012M11Rik|Fam125a	multivesicular body subunit 12A	protein-coding	0.55901183899518	0.711164642661927	0.131941586555312	0.125161242452196	0.115446425464394	0.142559644093426	1.28099994206455	0.126351249015383	0.712971095047826	0.727696376607425	1
Merged-chr2-25430578-2	chr2	25430478	25430678	+	949.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007379, intron 1 of 47)	intron (NM_007379, intron 1 of 47)	1904.0	NM_007379	11305.0	Mm.2210	NM_007379	ENSMUSG00000026944	Abca2	AI413825|Abc2|D2H0S1474E|mKIAA1062	ATP-binding cassette, sub-family A (ABC1), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-109692940-2	chr4	109692840	109693040	+	553.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007983, intron 1 of 18)	intron (NM_007983, intron 1 of 18)	16313.0	NM_007983	14084.0	Mm.318259	NM_007983	ENSMUSG00000010517	Faf1	AA408698|Dffrx|Fam	Fas-associated factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-65454029-4	chr16	65453932	65454132	+	880.224976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-66597.0	NM_008849	18736.0	Mm.355440	NM_008849	ENSMUSG00000004842	Pou1f1	GHF-1|Hmp1|Pit-1|Pit1|Pit1-rs1|dw|dwarf	POU domain, class 1, transcription factor 1	protein-coding	1.61460115720095	2.63761180197321	2.2718556953734	1.85306526449128	1.62865747105505	2.57239192237981	1.12108385371715	1.09556534252875	-0.945205114387828	0.393872485166121	0.88239394566339
Merged-chr17-24735867-2	chr17	24735767	24735967	+	991.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346668)	promoter-TSS (NM_001346668)	-726.0	NM_013759	27361.0	Mm.28212	NM_013759	ENSMUSG00000075705	Msrb1	D17Wsu82e|SELX|SelR|Sepr|Sepx1	methionine sulfoxide reductase B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-75846672-2	chr14	75846572	75846772	+	868.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009429, intron 3 of 5)	intron (NM_009429, intron 3 of 5)	-1251.0	NR_028481	100303751.0	Mm.484707	NR_028481	ENSMUSG00000065147	Snora31	MBI-161	small nucleolar RNA, H/ACA box 31	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129338440-4	chr2	129338339	129338539	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28467.0	NM_010554	16175.0	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	4.35640413537518	4.65575806661619	5.01773643917247	4.29624414825803	3.77442456390937	3.63573699550025	4.98510823127357	3.03721312484345	-0.709650756535593	0.149332510216958	0.600969853840471
Merged-chr11-120345218-8	chr11	120345081	120345281	+	773.28125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001313923)	TTS (NM_001313923)	2232.0	NR_105900	102465564.0		NR_105900	ENSMUSG00000098955	Mir6935	Gm27344|mmu-mir-6935	microRNA 6935	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5848846-2	chr19	5848746	5848946	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3366.0	NR_003513	66961.0	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117115910-2	chr11	117115810	117116010	+	726.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166507, intron 1 of 16)	CpG	738.0	NM_001166506	74136.0	Mm.272312	NM_028777	ENSMUSG00000020823	Sec14l1	1200017E04Rik|2810012L19Rik|Naa-35	SEC14-like lipid binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80711615-4	chr7	80711497	80711697	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_016721)	TTS (NM_016721)	-22720.0	NM_173863	70461.0	Mm.392175	NM_173863	ENSMUSG00000030527	Crtc3	2610312F20Rik|6332415K15Rik|AI429792|BC011210|TORC3	CREB regulated transcription coactivator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-99415226-4	chr5	99415140	99415340	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 2 of 3)	intron (NR_030692, intron 2 of 3)	-162313.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131083294-2	chr1	131083194	131083394	+	666.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008551, intron 1 of 9)	intron (NM_008551, intron 1 of 9)	14549.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34121918-3	chr17	34121816	34122016	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010386)	promoter-TSS (NM_010386)	-169.0	NM_010238	14312.0	Mm.3444	NM_010238	ENSMUSG00000024335	Brd2	AW228947|D17H6S113E|Frg-1|Fsrg-1|Fsrg1|Nat|Ring3|Rnf3|mKIAA4005	bromodomain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-121057006-4	chr11	121056847	121057047	+	887.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026907, intron 2 of 4)	MT2A|LTR|ERVL	6622.0	NM_026907	58210.0	Mm.116986	NM_026907	ENSMUSG00000039364	Sectm1b	1810003C24Rik|K12|Sectm1	secreted and transmembrane 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-113388626-2	chr8	113388526	113388726	+	762.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-128656.0	NR_110476	78048.0	Mm.252797	NR_110476		4930571O06Rik	-	RIKEN cDNA 4930571O06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115327109-4	chr5	115327020	115327220	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025573)	promoter-TSS (NM_025573)	-57.0	NM_025573	108014.0	Mm.287826	NM_025573	ENSMUSG00000029538	Srsf9	25kDa|2610029M16Rik|SRp30c|Sfrs9	serine/arginine-rich splicing factor 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-50932345-2	chr14	50932245	50932445	+	607.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx10|LINE|L1	-1496.0	NM_001310507	219024.0	Mm.239117	NM_001033271	ENSMUSG00000035953	Tmem55b	BC039161|Pip4p1	transmembrane protein 55b	protein-coding	1.09294917054598	2.13626617656176	1.1538351124298	2.61640187434578	2.01490118246618	2.15303889620683	2.30140741510084	1.57157900352595	0.245015646773629	0.825918003821468	0.998431161219273
Merged-chr9-104270158-1	chr9	104270058	104270258	+	547.0	f0_balb.idr	Intergenic	MTD|LTR|ERVL-MaLR	-7228.0	NM_001163026	235567.0	Mm.217256	NM_001163026	ENSMUSG00000032560	Dnajc13	D030002L11Rik|Gm1124|RME-8|Rme8|mKIAA0678	DnaJ heat shock protein family (Hsp40) member C13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-34833675-4	chr11	34833582	34833782	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027411)	promoter-TSS (NM_027411)	-41.0	NM_027411	70385.0	Mm.194368	NM_027411	ENSMUSG00000069910	Spdl1	1700018I02Rik|2600001J17Rik|2810049B11Rik|AA409762|Ccdc99	spindle apparatus coiled-coil protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-74921475-3	chr15	74921401	74921601	+	810.444458	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33550.0	NM_001164039	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	0.553961496397847	0.192683184682247	0.186288007111289	0.181344475110115	0.910155810660813	0.194122969918228	0.772169358755176	0.351330596292523	2.12554058322111	0.289144979142984	1
Merged-chr2-19716029-4	chr2	19715912	19716112	+	878.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57950.0	NM_027715	71198.0	Mm.83981	NM_027715	ENSMUSG00000043415	Otud1	4933428L19Rik	OTU domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3629714-2	chr4	3629613	3629813	+	635.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR11C_MM|LTR|ERVK	-26793.0	NR_040643	70143.0	Mm.417835	NR_040643	ENSMUSG00000085394	2210414B05Rik	-	RIKEN cDNA 2210414B05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-7784070-3	chr9	7783937	7784137	+	733.361145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_049191)	promoter-TSS (NR_049191)	-353.0	NR_049191	100885830.0		NR_049191	ENSMUSG00000093615	Mir5618	Gm23685|mmu-mir-5618	microRNA 5618	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55593242-2	chr14	55593142	55593342	+	996.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_194346, intron 5 of 20)	B2_Mm2|SINE|B2	1500.0	NM_194346	268749.0	Mm.23748	NM_194346	ENSMUSG00000047098	Rnf31	AL033293|BC031509|Flj10111|HOIP|Paul|mFLJ00217	ring finger protein 31	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-106714230-2	chr14	106714130	106714330	+	611.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-227710.0	NR_045938	73631.0	Mm.48862	NR_045938	ENSMUSG00000099794	1700128A07Rik	-	RIKEN cDNA 1700128A07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-20962862-2	chr18	20962762	20962962	+	605.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026301, intron 1 of 5)	intron (NM_026301, intron 1 of 5)	18237.0	NM_026301	67664.0	Mm.45980	NM_026301	ENSMUSG00000033107	Rnf125	4930553F04Rik	ring finger protein 125	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-93269944-2	chr5	93269844	93270044	+	616.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007635, intron 3 of 7)	intron (NM_007635, intron 3 of 7)	2371.0	NM_007635	12452.0	Mm.3527	NM_007635	ENSMUSG00000029385	Ccng2	-	cyclin G2	protein-coding	0.346016435604311	0.836098365304934	0.392896369770999	0.209841528051593	0.350415751600575	0.847388948362295	0.397874920582774	0.210707694784182	0.0398551657391268	0.98209732970039	1
Merged-chr5-20847154-1	chr5	20847054	20847254	+	774.5	f0_balb.idr	intron (NM_172992, intron 2 of 17)	intron (NM_172992, intron 2 of 17)	34970.0	NM_172992	68770.0	Mm.86410	NM_172992	ENSMUSG00000039987	Phtf2	1110054G21Rik|9530062N20Rik|AI447096|C77923	putative homeodomain transcription factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-77419990-4	chr8	77419919	77420119	+	868.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030113, intron 7 of 22)	intron (NM_030113, intron 7 of 22)	-97037.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120575892-6	chr8	120575713	120575913	+	860.138916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145896, intron 13 of 15)	intron (NM_001145896, intron 13 of 15)	13262.0	NM_178856	272551.0	Mm.275910	NM_178856	ENSMUSG00000031821	Gins2	2210013I18Rik|4833427B12Rik|AI323585|Pfs2	GINS complex subunit 2 (Psf2 homolog)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-60799900-2	chr19	60799793	60799993	+	642.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9200.0	NM_010123	13669.0	Mm.2238	NM_010123	ENSMUSG00000024991	Eif3a	A830012B05Rik|Csma|Eif3|Eif3s10|mKIAA0139	eukaryotic translation initiation factor 3, subunit A	protein-coding	1.20630146736045	0.920741222157637	1.3290705251801	1.48594844582623	0.66890928733285	0.705617831199852	0.69382164759692	1.58250608495035	-1.06200995246843	0.485165704300334	0.931753689758342
Merged-chr10-44071293-4	chr10	44071195	44071395	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66449.0	NM_172393	11630.0	Mm.292082	NM_172393	ENSMUSG00000019866	Crybg1	AI462491|AI463325|Aim1	crystallin beta-gamma domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-11611702-2	chr17	11611602	11611802	+	578.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016694, intron 6 of 11)	intron (NM_016694, intron 6 of 11)	271487.0	NR_045808	52027.0	Mm.442257	NR_045808		D17Ertd648e	-	DNA segment, Chr 17, ERATO Doi 648, expressed	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-4842962-2	chr9	4842862	4843062	+	694.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2B2|LTR|ERVL	-46728.0	NM_019691	14802.0	Mm.209263	NM_019691	ENSMUSG00000025892	Gria4	GluA4|GluR-D|Glur-4|Glur4|Gluralpha4|spkw1	glutamate receptor, ionotropic, AMPA4 (alpha 4)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-10475587-2	chr16	10475487	10475687	+	622.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-4485.0	NM_001302619	12265.0	Mm.249560	NM_007575	ENSMUSG00000022504	Ciita	C2ta|EG669998|Gm9475|Mhc2ta	class II transactivator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3753961-1	chr19	3753861	3754061	+	544.0	f0_balb.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-13460.0	NM_001167889	225888.0	Mm.278578	NM_144871	ENSMUSG00000045098	Kmt5b	AA117471|C630029K18Rik|Suv4-20h1|Suv420h1	lysine methyltransferase 5B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-164414809-4	chr2	164414705	164414905	+	886.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009036, exon 12 of 12)	3' UTR (NM_009036, exon 12 of 12)	-9645.0	NM_001252563	17183.0	Mm.29428	NM_013592	ENSMUSG00000016995	Matn4	matrilin-4	matrilin 4	protein-coding	3.00444976815772	3.01455095471641	3.67701834372597	3.07118961933104	4.52391562244976	4.32854182909737	4.74595281384589	4.68950321870294	1.89322912150844	4.22933936989313e-05	0.00152230841279933
Merged-chr11-50205015-2	chr11	50204915	50205115	+	655.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290769, intron 5 of 7)	intron (NM_001290769, intron 5 of 7)	5805.0	NM_001290769	18412.0	Mm.40828	NM_011018	ENSMUSG00000015837	Sqstm1	A170|OSF-6|Osi|STAP|STONE14|p62	sequestosome 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-114986746-4	chr4	114986639	114986839	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025647, intron 1 of 5)	CpG	489.0	NM_025647	66588.0	Mm.294159	NM_025647	ENSMUSG00000028719	Cmpk1	0610011D08Rik|CK|Cmpk|UMP-CMPk	cytidine monophosphate (UMP-CMP) kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88553011-4	chr3	88552908	88553108	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033526)	promoter-TSS (NM_033526)	-57.0	NR_155541	83409.0	Mm.41680	NM_031248	ENSMUSG00000028062	Lamtor2	2010111E04Rik|AL022628|Mapbpip|P14|Rab25|Robld3	late endosomal/lysosomal adaptor, MAPK and MTOR activator 2	protein-coding	2.86136514006959	3.36539847044707	3.62660667944634	3.60173825799838	4.35513230526565	2.83545430087039	4.38714470766555	4.54913087835584	1.12671209088524	0.0385680698605412	0.279995785913739
Merged-chr1-181852631-4	chr1	181852516	181852716	+	947.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10215.0	NM_133815	98386.0	Mm.4538	NM_133815	ENSMUSG00000004880	Lbr	AI505894|ic	lamin B receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-22622065-2	chr2	22621965	22622165	+	716.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008078)	promoter-TSS (NM_008078)	-262.0	NM_008078	14417.0	Mm.4784	NM_008078	ENSMUSG00000026787	Gad2	6330404F12Rik|GAD(65)|GAD65|Gad-2	glutamic acid decarboxylase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-66118652-2	chr7	66118552	66118752	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081163, intron 1 of 2)	intron (NM_001081163, intron 1 of 2)	9137.0	NM_001081163	269941.0	Mm.333916	NM_001081163	ENSMUSG00000032640	Chsy1	mKIAA0990	chondroitin sulfate synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106410876-3	chr11	106410774	106410974	+	864.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023913, intron 12 of 21)	intron (NM_023913, intron 12 of 21)	-28093.0	NM_010494	15896.0	Mm.394	NM_010494	ENSMUSG00000001029	Icam2	CD102|Icam-2|Ly-60	intercellular adhesion molecule 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-55576188-3	chr1	55576067	55576267	+	740.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114663, intron 1 of 5)	intron (NM_001114663, intron 1 of 5)	170221.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	-0.478342636821481	-0.286303416432506	-0.471445105300601	-0.474047069168471	0.057769141101821	-0.281979764746569	-0.30127260192979	-0.473593290756224	2.42816246468979	0.320485638028605	1
Merged-chr17-87305220-2	chr17	87305120	87305320	+	688.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028639, intron 3 of 19)	intron (NM_028639, intron 3 of 19)	22334.0	NM_028639	225049.0	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-115837936-2	chr4	115837836	115838036	+	668.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1262.0	NM_001285488	17346.0	Mm.209327	NM_021461	ENSMUSG00000028708	Mknk1	2410048M24Rik|Mnk1	MAP kinase-interacting serine/threonine kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83137729-4	chr6	83137619	83137819	+	897.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_133641, exon 1 of 12)	5' UTR (NM_133641, exon 1 of 12)	635.0	NM_133641	20166.0	Mm.4139	NM_009106	ENSMUSG00000034930	Rtkn	-	rhotekin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-58663212-3	chr16	58663103	58663303	+	667.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7005.0	NM_007757	12892.0	Mm.291519	NM_007757	ENSMUSG00000022742	Cpox	CPX|Cpo|HCP|cac|nct	coproporphyrinogen oxidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191275819-4	chr1	191275704	191275904	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER30|DNA|hAT-Charlie	42314.0	NM_025424	66208.0	Mm.46444	NM_025424	ENSMUSG00000037499	Nenf	1110060M21Rik|SCIRP10|Spuf	neuron derived neurotrophic factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76536337-2	chr15	76536237	76536437	+	970.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_013909, exon 8 of 9)	exon (NM_013909, exon 8 of 9)	2409.0	NM_013909	30840.0	Mm.275279	NM_013909	ENSMUSG00000022559	Fbxl6	AU021795|Fbl6	F-box and leucine-rich repeat protein 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116197696-3	chr11	116197562	116197762	+	692.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271898, intron 2 of 13)	intron (NM_001271898, intron 2 of 13)	-1193.0	NM_027107	69535.0	Mm.390347	NM_027107	ENSMUSG00000020778	Ten1	2310004N24Rik	TEN1 telomerase capping complex subunit	protein-coding	1.24165431166224	1.60584601361333	1.87963859101214	1.95142032652004	1.59777474504292	1.39347468740248	3.04150720104142	1.68417649086983	1.10850356195877	0.290845097612468	0.795742750399449
Merged-chr17-26753708-4	chr17	26753633	26753833	+	914.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029870, intron 4 of 8)	intron (NM_029870, intron 4 of 8)	-27346.0	NM_172149	224630.0	Mm.21795	NM_172149	ENSMUSG00000024191	Bnip1	2010005M06Rik|5930429G21Rik|Sec20	BCL2/adenovirus E1B interacting protein 1	protein-coding	3.02136443668613	2.75688724473257	3.4737881523001	2.97937481808804	3.7547369075971	3.70607078198541	4.54419183470304	3.62457537811898	1.3336132390213	0.0152540850454494	0.147040611889403
Merged-chr15-97360712-2	chr15	97360612	97360812	+	731.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172293, intron 3 of 5)	intron (NM_172293, intron 3 of 5)	-113425.0	NM_001164602	105827.0	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-38007651-2	chr6	38007551	38007751	+	771.416687	f1_balb.idr|f1_c57bl6.idr	intron (NM_177200, intron 14 of 15)	intron (NM_177200, intron 14 of 15)	39345.0	NM_177200	320590.0	Mm.197449	NM_177200	ENSMUSG00000029830	Svopl	9430071P14Rik	SV2 related protein homolog (rat)-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-63421443-2	chr4	63421343	63421543	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001008792, intron 7 of 11)	L2b|LINE|L2	-17998.0	NM_001045514	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-108458312-4	chr4	108458206	108458406	+	961.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1120.0	NM_175472	230594.0	Mm.25181	NM_175472	ENSMUSG00000034610	Zcchc11	6030404K05Rik|9230115F04Rik|PPAPD3|mKIAA0191	zinc finger, CCHC domain containing 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-121846870-3	chr9	121846798	121846998	+	972.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER2|DNA|TcMar-Tigger	-7437.0	NM_028384	100502861.0	Mm.335550	NM_028384	ENSMUSG00000079235	Ccdc13	2900041A11Rik|Gm188	coiled-coil domain containing 13	protein-coding	1.24022357617869	1.10854421377567	1.08117618741771	1.94046905186267	2.56796992518042	2.52468624004449	2.13854825766455	1.67619719065779	2.48048298571524	0.0262162107708094	0.216626788449153
Merged-chr8-86861749-4	chr8	86861636	86861836	+	969.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_030563, exon 2 of 7)	exon (NM_030563, exon 2 of 7)	23522.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-143907611-4	chr7	143907527	143907727	+	861.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25488.0	NR_105830	102465217.0		NR_105830	ENSMUSG00000099321	Mir6404	Gm28014|mmu-mir-6404	microRNA 6404	ncRNA	2.0307934187714	2.26440518056459	2.04538593078064	2.80093025876686	2.36729323185553	2.53688132279351	2.45468400956073	2.00174980097927	0.051398289602921	0.950597778850031	0.998431161219273
Merged-chr12-111909144-2	chr12	111909044	111909244	+	609.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1089.0	NM_011625	21981.0	Mm.313076	NM_011625	ENSMUSG00000021285	Ppp1r13b	AI449786|ASPP1|AW545810|Tp53bp2|Trp53bp2|p85	protein phosphatase 1, regulatory (inhibitor) subunit 13B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-138819908-2	chr5	138819808	138820008	+	693.833313	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001195128)	promoter-TSS (NM_001195128)	-172.0	NM_001195128	384244.0	Mm.485002	NM_001195128	ENSMUSG00000094504	Gm5294	EG384244	predicted gene 5294	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-160006776-2	chr2	160006676	160006876	+	851.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-9877.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83031775-2	chr6	83031675	83031875	+	676.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001291799, exon 5 of 5)	exon (NM_001291799, exon 5 of 5)	1696.0	NM_010070	13448.0	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	-0.316121084544605	-0.627361907409129	-0.629830747604164	-0.631715555041727	-0.402842092447688	-0.315551619893357	-0.62928873647348	-0.631387539847425	0.718103866429706	0.794075300883278	1
Merged-chr7-113181607-2	chr7	113181507	113181707	+	646.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-25858.0	NM_001243048	11865.0	Mm.33970	NM_007489	ENSMUSG00000055116	Arntl	Arnt3|BMAL1b|Bmal1|MOP3|bHLHe5|bmal1b'	aryl hydrocarbon receptor nuclear translocator-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-66944574-3	chr6	66944457	66944657	+	808.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177560, intron 3 of 4)	intron (NM_001177560, intron 3 of 4)	47666.0	NM_001177558	14701.0	Mm.234342	NM_025278	ENSMUSG00000036402	Gng12	2010305F15Rik|AA536815|AI115529|AI314170|AI842738	guanine nucleotide binding protein (G protein), gamma 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81173953-2	chr10	81173853	81174053	+	883.6999509999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2678.0	NM_007907	13629.0	Mm.2903	NM_007907	ENSMUSG00000034994	Eef2	Ef-2	eukaryotic translation elongation factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-121423115-4	chr14	121422997	121423197	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43867.0	NM_145465	223255.0	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35997160-4	chr17	35997059	35997259	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015618, intron 1 of 1)	intron (NR_015618, intron 1 of 1)	2655.0	NR_015618	77810.0	Mm.483143	NR_015618		A930015D03Rik	-	RIKEN cDNA A930015D03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128698298-4	chr2	128698187	128698387	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008587)	promoter-TSS (NM_008587)	-628.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-149863715-2	chr4	149863617	149863817	+	932.5	f0_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-89450.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	2.76746436218518	4.886108374515	2.63908140462731	3.46734079295419	2.99174622907764	1.61191440260526	2.66296148766054	3.48562105726693	-1.40610188958958	0.0651777997138204	0.382365198868571
Merged-chr19-42001415-4	chr19	42001317	42001517	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145500, intron 1 of 2)	intron (NM_145500, intron 1 of 2)	19654.0	NM_145500	226122.0	Mm.22948	NM_145500	ENSMUSG00000025171	Ubtd1	BC016129	ubiquitin domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-78699251-3	chr14	78699147	78699347	+	904.7333369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081336, intron 2 of 29)	intron (NM_001081336, intron 2 of 29)	33482.0	NM_001081336	380921.0	Mm.89591	NM_001081336	ENSMUSG00000034731	Dgkh	5930402B05Rik|D130015C16|DGK	diacylglycerol kinase, eta	protein-coding	0.85573622879287	2.13706177067016	1.75162854997989	0.882306220167304	1.06147405407261	1.55686957828163	1.98062567750976	1.29273595860925	-0.0619628839148624	0.961849015825361	0.998431161219273
Merged-chr14-98956945-3	chr14	98956841	98957041	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	89195.0	NM_175245	76789.0	Mm.38912	NM_175245	ENSMUSG00000033186	Mzt1	2410129H14Rik|AI120158|Mozart1	mitotic spindle organizing protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-104507895-4	chr7	104507760	104507960	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001167828)	promoter-TSS (NM_001167828)	-11.0	NM_001167828	209387.0	Mm.277377	NM_199146	ENSMUSG00000057596	Trim30d	AI451617|TRIM30-3|Trim79	tripartite motif-containing 30D	protein-coding	6.27387666284373	6.5404326835055	5.81357867775178	4.51242868028275	4.16103189351356	4.27452997541119	3.88170047008019	3.65843967405559	-2.29819520515408	2.10534472371948e-08	2.2553505352845e-06
Merged-chr8-117519145-4	chr8	117519066	117519266	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172285, intron 2 of 32)	intron (NM_172285, intron 2 of 32)	20891.0	NM_172285	234779.0	Mm.192699	NM_172285	ENSMUSG00000034330	Plcg2	PLC-gamma-2|PLCgamma2|Plcg-2	phospholipase C, gamma 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-100199482-4	chr12	100199367	100199567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009790)	promoter-TSS (NM_009790)	32.0	NM_009790	12313.0	Mm.285993	NM_009790	ENSMUSG00000001175	Calm1	AI256814|AI327027|AI461935|AL024000|CaM|Calm|Cam1	calmodulin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-15959272-3	chr4	15959246	15959446	+	771.299988	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013752, intron 1 of 15)	intron (NM_013752, intron 1 of 15)	1379.0	NM_013752	27354.0	Mm.20866	NM_013752	ENSMUSG00000028224	Nbn	Nbs1	nibrin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-3076320-2	chr17	3076220	3076420	+	887.333374	f1_balb.idr|f1_c57bl6.idr	intron (NR_003519, intron 7 of 7)	intron (NR_003519, intron 7 of 7)	7863.0	NR_003519	328734.0	Mm.335641	NR_003519		Pisd-ps2	D030013I16Rik	phosphatidylserine decarboxylase, pseudogene 2	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-43868499-3	chr2	43868362	43868562	+	883.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301831, intron 5 of 14)	Lx8b|LINE|L1	119638.0	NM_001301831	76117.0	Mm.217350	NM_153820	ENSMUSG00000049744	Arhgap15	5830480G12Rik	Rho GTPase activating protein 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-23987086-4	chr18	23986968	23987168	+	991.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2566.0	NM_011755	22694.0	Mm.290596	NM_011755	ENSMUSG00000063281	Zfp35	Zfp-35|Znf271|mszf13|mszf20-1|mszf28|mszf68	zinc finger protein 35	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-102745394-4	chr2	102745308	102745508	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153853, intron 1 of 1)	intron (NR_153853, intron 1 of 1)	1352.0	NR_153852	102637542.0	Mm.371582	NR_153852		Gm13872	-	predicted gene 13872	ncRNA	4.30440607889639	3.66900590648635	4.62796873612297	4.47149486905161	3.52898831311553	4.24241876599422	3.2483654576522	4.10560073743866	-0.652417028534618	0.164207675001984	0.627840562356214
Merged-chr10-62556657-4	chr10	62556557	62556757	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21800.0	NM_028197	72320.0	Mm.258955	NM_028197	ENSMUSG00000036955	Kif1bp	0710007C18Rik|2510003E04Rik|KBP|mKIAA1279	KIF1 binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-60281977-1	chr19	60281877	60282077	+	540.0	f1_c57bl6.idr	Intergenic	Lx2B|LINE|L1	-55276.0	NM_001358273	76539.0	Mm.290183	NM_029648	ENSMUSG00000057858	Fam204a	2310065H12Rik|2610015K05Rik|D19Ertd737e	family with sequence similarity 204, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-182892139-2	chr1	182892039	182892239	+	607.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001356463, exon 7 of 8)	exon (NM_001356463, exon 7 of 8)	-62649.0	NM_016928	53791.0	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-173740493-2	chr2	173740393	173740593	+	591.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019806, intron 1 of 5)	intron (NM_019806, intron 1 of 5)	2922.0	NM_019806	56491.0	Mm.260456	NM_019806	ENSMUSG00000054455	Vapb	AI225786|AI840687|AI848259|D2Abb2e|R75548|VAP33b|Vamp33b	vesicle-associated membrane protein, associated protein B and C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-62762191-2	chr5	62762091	62762291	+	560.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178407, intron 1 of 32)	intron (NM_178407, intron 1 of 32)	3986.0	NM_178407	212285.0	Mm.244403	NM_178407	ENSMUSG00000037999	Arap2	Centd1|Gm148|mKIAA0580	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132785679-2	chr4	132785579	132785779	+	584.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001033308, exon 4 of 6)	exon (NM_001033308, exon 4 of 6)	10685.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-138343553-3	chr1	138343426	138343626	+	842.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	69788.0	NM_177397	338375.0	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-104792169-4	chr3	104792042	104792242	+	739.979187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007484, intron 2 of 4)	intron (NM_007484, intron 2 of 4)	3108.0	NM_001291859	11853.0	Mm.262	NM_007484	ENSMUSG00000002233	Rhoc	AI324259|Arh9|Arhc	ras homolog family member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-108826237-1	chr6	108826137	108826337	+	856.0	f0_balb.idr	Intergenic	Intergenic	-2404.0	NM_138677	192193.0	Mm.21596	NM_138677	ENSMUSG00000030104	Edem1	A130059K23Rik|EDEM|mKIAA0212	ER degradation enhancer, mannosidase alpha-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-111094799-4	chr9	111094681	111094881	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-23330.0	NM_027742	71268.0	Mm.302287	NM_027742	ENSMUSG00000032497	Lrrfip2	5133400F20Rik|AI850587	leucine rich repeat (in FLII) interacting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99457220-4	chr15	99457098	99457298	+	850.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001884, intron 1 of 12)	CpG	550.0	NM_001001884	380969.0	Mm.22915	NM_001001884	ENSMUSG00000023009	Nckap5l	C230021P08Rik|Cep169	NCK-associated protein 5-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-135659693-4	chr1	135659595	135659795	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60368.0	NM_001360782	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-7493474-1	chr19	7493374	7493574	+	553.0	f0_balb.idr	promoter-TSS (NM_146091)	promoter-TSS (NM_146091)	-566.0	NM_001163505	109168.0	Mm.264016	NM_146091	ENSMUSG00000024759	Atl3	4633402C03Rik|5730596K20Rik|AI465397|AW228836	atlastin GTPase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120487986-5	chr8	120487937	120488137	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198671)	promoter-TSS (NM_198671)	-829.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64299024-2	chr5	64298915	64299115	+	958.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 11 of 18)	intron (NM_001289514, intron 11 of 18)	68658.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	1.40198791531492	2.04025480840351	1.66341514449696	1.97539865481924	0.787745123259232	0.84264086302055	0.825221490458226	1.02805987606008	-4.42644199330449	0.00229937605227072	0.037014195717993
Merged-chr4-127169674-3	chr4	127169578	127169778	+	623.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198618, intron 1 of 11)	intron (NM_198618, intron 1 of 11)	474.0	NM_198618	242667.0	Mm.331885	NM_198618	ENSMUSG00000042388	Dlgap3	BC058433|DAP-3|DAP3|Prpl8|Sapap3	DLG associated protein 3	protein-coding	1.94359611747924	1.17468022665581	1.15134049717816	1.82488891054435	1.85876194508666	2.31294368491928	2.23220639950748	1.95468305170801	1.47925680411659	0.17093208200968	0.638494122027442
Merged-chr6-140424219-3	chr6	140424083	140424283	+	621.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144920)	promoter-TSS (NM_144920)	84.0	NM_144920	109135.0	Mm.247670	NM_144920	ENSMUSG00000030231	Plekha5	2810431N21Rik|AI428202|AK129423|AMH-Cre|Ayu21-9|Gt(pU21)9Imeg|Pepp2|Tg(AMH-cre)1Flor	pleckstrin homology domain containing, family A member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-162224972-4	chr1	162224857	162225057	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_002870, exon 1 of 1)	non-coding (NR_002870, exon 1 of 1)	1589.0	NR_029796	387210.0		NR_029796	ENSMUSG00000065516	Mir214	Mirn214|mir-214|mmu-mir-214	microRNA 214	ncRNA	4.98564840108522	4.42189048475881	5.15524860504028	4.5440623194969	5.05057660924473	5.23705535286911	5.25676098427532	5.52896411620636	0.54856161709704	0.0903436204693352	0.464281592686072
Merged-chr4-85984188-2	chr4	85984088	85984288	+	736.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13A1|LTR|ERVK	-69727.0	NM_029967	77739.0	Mm.331690	NM_029967	ENSMUSG00000066113	Adamtsl1	5930437A14Rik|6720426B09Rik|ADAMTSL-1	ADAMTS-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116012688-4	chr11	116012578	116012778	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016905)	promoter-TSS (NM_016905)	41.0	NM_016905	14635.0	Mm.2820	NM_016905	ENSMUSG00000020766	Galk1	AA409894|GALK|Gk|Glk|Glk1	galactokinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6977615-2	chr19	6977515	6977715	+	634.833313	f1_balb.idr|f1_c57bl6.idr	TTS (NM_008889)	TTS (NM_008889)	1777.0	NM_001360288	14227.0	Mm.4234	NM_008020	ENSMUSG00000056629	Fkbp2	mFKBP13|mFKBP2	FK506 binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64312087-3	chr5	64311938	64312138	+	790.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 12 of 18)	intron (NM_001289514, intron 12 of 18)	81681.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	0.430711984103348	0.457020594403879	1.15529238546841	0.441810850845845	0.946407671998589	0.458944822562646	1.16841766272156	0.901071001728418	1.16265008479891	0.514495720541652	1
Merged-chr6-100287375-7	chr6	100287251	100287451	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019743)	promoter-TSS (NM_019743)	7.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-142367590-6	chr5	142367509	142367709	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-33888.0	NM_199068	17425.0	Mm.24214	NM_010812	ENSMUSG00000056493	Foxk1	A630048H08Rik|AI463295|Gm10868|Mnf	forkhead box K1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-108748406-3	chr8	108748306	108748506	+	928.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007496, intron 1 of 9)	intron (NM_007496, intron 1 of 9)	33762.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-158204437-2	chr2	158204337	158204537	+	872.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001131021, intron 10 of 15)	intron (NM_001131021, intron 10 of 15)	12429.0	NR_036606	73399.0	Mm.416861	NR_036606	ENSMUSG00000078957	1700060C20Rik	-	RIKEN cDNA 1700060C20 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-61399565-4	chr10	61399465	61399665	+	857.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16042.0	NM_013753	27355.0	Mm.269699	NM_013753	ENSMUSG00000020092	Pald1	MMPAL|Pald|mKIAA1274	phosphatase domain containing, paladin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-155700639-3	chr4	155700553	155700753	+	729.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-4162.0	NM_026899	68991.0	Mm.294770	NM_026899	ENSMUSG00000029038	Ssu72	1190002E22Rik|1500011L16Rik|2610101M12Rik	Ssu72 RNA polymerase II CTD phosphatase homolog (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-17794971-2	chr12	17794871	17795071	+	784.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	104162.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	1.22685191161178	1.7937535751339	1.72659409538934	1.11847354384209	0.895184058971962	1.80858292341317	1.74161155626375	1.12308592088243	-0.151129669360776	0.902886569398493	0.998431161219273
Merged-chr17-46639424-2	chr17	46639324	46639524	+	571.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_029091, exon 7 of 17)	exon (NM_029091, exon 7 of 17)	6656.0	NM_001357130	74764.0	Mm.279599	NM_029091	ENSMUSG00000003546	Klc4	1200014P03Rik|AA408085|AW146303|Knsl8	kinesin light chain 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-128854245-4	chr6	128854148	128854348	+	793.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001254946, intron 2 of 2)	intron (NM_001254946, intron 2 of 2)	-27933.0	NM_030599	80782.0	Mm.6180	NM_030599	ENSMUSG00000079298	Klrb1b	Klrb1d|Ly55b|Ly55d|NKR-P1B|NKR-P1D|Nkrp1-b|Nkrp1b|Nkrp1d|ly-55b|ly-55d	killer cell lectin-like receptor subfamily B member 1B	protein-coding	-1.53624506061781	-1.50498120743042	-1.36567403739569	-1.52220181915623	-1.2509067664531	-1.50293238927041	-1.51229537506134	-1.5208116794288	0.640753741356348	0.855918148133185	1
Merged-chr10-46141149-3	chr10	46141073	46141273	+	889.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-103575.0	NR_028274	100302593.0		NR_028274	ENSMUSG00000095118	Snord14d	Gm23710	small nucleolar RNA, C/D box 14D	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-10273364-4	chr3	10273257	10273457	+	911.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029310, intron 1 of 5)	Lx8|LINE|L1	-19105.0	NM_001357160	75497.0	Mm.47052	NM_029310	ENSMUSG00000027530	Fabp12	1700008G05Rik	fatty acid binding protein 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191021350-4	chr1	191021236	191021436	+	836.491699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081259, intron 1 of 9)	intron (NM_001081259, intron 1 of 9)	-4015.0	NR_027298	100125339.0	Mm.472263	NR_027298	ENSMUSG00000097845	A230020J21Rik	-	RIKEN cDNA A230020J21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47767294-4	chr17	47767212	47767412	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161723, intron 1 of 8)	intron (NM_001161723, intron 1 of 8)	-18432.0	NM_011549	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-5658871-1	chr5	5658771	5658971	+	585.0	f0_balb.idr	intron (NM_172447, intron 1 of 22)	Lx3_Mus|LINE|L1	5361.0	NM_172447	207686.0	Mm.319007	NM_172447	ENSMUSG00000040473	Cfap69	4921525K03|A330021E22Rik|AI427898	cilia and flagella associated protein 69	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-69199121-2	chr17	69199021	69199221	+	633.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355736, intron 1 of 21)	intron (NM_001355736, intron 1 of 21)	39765.0	NM_001355735	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	-1.5061220274826	-1.47360709383584	-1.48343987814663	-1.49151681994238	-1.50383953926072	-1.47147628845725	-1.0170701920923	-1.49007105122263	2.15652851593596	0.535359572134045	1
Merged-chr16-56029782-4	chr16	56029704	56029904	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024622)	promoter-TSS (NM_001024622)	-87.0	NM_001356450	76302.0	Mm.310642	NM_001024622	ENSMUSG00000071533	Pcnp	1110018D06Rik|AI647035	PEST proteolytic signal containing nuclear protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-34850625-2	chr18	34850525	34850725	+	966.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10036.0	NM_144865	225362.0	Mm.293588	NM_144865	ENSMUSG00000038555	Reep2	-	receptor accessory protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114998148-3	chr11	114998019	114998219	+	766.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134158, intron 3 of 3)	intron (NM_134158, intron 3 of 3)	3761.0	NM_134158	140497.0	Mm.2699	NM_134158	ENSMUSG00000044811	Cd300c2	CLM4|Cd300c|Cd300d|DIgR1|Igsf7|Lmir2|MAIR-II	CD300C molecule 2	protein-coding	1.89200562550005	2.45922820132091	1.16973391282442	1.87350495233453	1.79088553760909	2.37944740576718	1.17568034286876	2.31426010754929	0.18517481876112	0.86513289170959	0.998431161219273
Merged-chr11-8690474-1	chr11	8690374	8690574	+	713.0	f1_c57bl6.idr	Intergenic	Intergenic	-25939.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	-0.27600730034017	0.0815978542855045	0.151992365438736	-0.411851461260736	-0.416155723032351	-0.403944937143887	-0.407927171724314	-0.411318737961508	-3.51753746092061	0.156016795853001	1
Merged-chr7-81162567-4	chr7	81162470	81162670	+	851.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004184, intron 12 of 17)	intron (NM_001004184, intron 12 of 17)	47771.0	NM_001004184	434203.0	Mm.389909	NM_001004184	ENSMUSG00000025726	Slc28a1	Cnt1	solute carrier family 28 (sodium-coupled nucleoside transporter), member 1	protein-coding	-0.441953263753609	-0.429526652854606	-0.433600219304668	-0.436741499167595	-0.293806254856996	-0.0650897310771384	0.252180065531982	-0.436192824463226	3.57424513884283	0.149246177181797	1
Merged-chr14-57888460-2	chr14	57888360	57888560	+	782.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029492, intron 1 of 12)	intron (NM_029492, intron 1 of 12)	1876.0	NM_029492	75965.0	Mm.29044	NM_029492	ENSMUSG00000021969	Zdhhc20	4930542A17Rik|5033406L14Rik|AI448102|B230110O18Rik|HK11	zinc finger, DHHC domain containing 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-62540006-2	chr10	62539906	62540106	+	621.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12561.0	NM_001358965	19073.0	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-94678093-1	chr11	94677993	94678193	+	582.0	f1_c57bl6.idr	promoter-TSS (NM_145828)	promoter-TSS (NM_145828)	-600.0	NM_145828	217119.0	Mm.100638	NM_145828	ENSMUSG00000020868	Xylt2	E030002B02Rik|XT-II|XT2|xylT-II	xylosyltransferase II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-76519049-4	chr12	76518948	76519148	+	830.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14164.0	NR_039597	100628604.0		NR_039597	ENSMUSG00000092738	Mir5135	mir-5135|mmu-mir-5135|mu-mir-5135	microRNA 5135	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-44980698-6	chr2	44980596	44980796	+	815.460327	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42481.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-12261410-2	chr12	12261310	12261510	+	662.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029758)	promoter-TSS (NM_029758)	-729.0	NM_029758	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	0.422025795394495	0.18931629693105	0.183983664932616	0.33323003502284	0.625959277262666	0.529149987181199	0.185157998538336	0.687417969949494	1.85368342355246	0.332913494121325	1
Merged-chr4-106631092-1	chr4	106630992	106631192	+	614.0	f1_c57bl6.idr	intron (NM_177667, intron 1 of 6)	intron (NM_177667, intron 1 of 6)	8643.0	NM_177667	230576.0	Mm.41945	NM_177667	ENSMUSG00000034919	Ttc22	4732467L16Rik	tetratricopeptide repeat domain 22	protein-coding	3.8345797766823	2.68659567211656	3.6580313951441	1.39658303760071	3.2625476191387	2.54036607144921	4.58179182392448	1.40657260711655	0.376536888632452	0.811320932301999	0.998431161219273
Merged-chr7-123429501-2	chr7	123429401	123429601	+	725.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355050, intron 6 of 6)	intron (NM_001355050, intron 6 of 6)	21684.0	NM_001355050	30949.0	Mm.260527	NM_025304	ENSMUSG00000030763	Lcmt1	AL033290|LCMT-1|Lcmt	leucine carboxyl methyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-40479704-2	chr16	40479604	40479804	+	543.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361281, intron 1 of 8)	intron (NM_001361281, intron 1 of 8)	495340.0	NM_001361281	268890.0	Mm.310524	NM_175548	ENSMUSG00000061080	Lsamp	5430428I19|AW046674|B130007O04Rik|D930023J12Rik|Gm29907|Lam|Lamp	limbic system-associated membrane protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-19021150-1	chr11	19021050	19021250	+	748.0	f0_balb.idr	Intergenic	Intergenic	-2181.0	NM_010789	17268.0	Mm.356578	NM_010789	ENSMUSG00000020160	Meis1	C530044H18Rik|Evi8	Meis homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-86495056-4	chr17	86494957	86495157	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011104, intron 9 of 14)	intron (NM_011104, intron 9 of 14)	-207879.0	NR_045435	72104.0	Mm.443401	NR_045435	ENSMUSG00000100738	2010106C02Rik	-	RIKEN cDNA 2010106C02 gene	ncRNA	4.92922112797386	4.42233931912166	4.56803626575023	4.59291579667142	5.08287553735934	5.24242242577748	5.55381183578185	5.9935386770833	1.01949522688675	0.0021754203947177	0.0354308061934248
Merged-chr8-46846042-2	chr8	46845942	46846142	+	748.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008391, exon 9 of 9)	exon (NM_008391, exon 9 of 9)	106297.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-64872198-2	chr7	64872098	64872298	+	612.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_023239, exon 1 of 1)	exon (NM_023239, exon 1 of 1)	842.0	NM_023239	66647.0	Mm.19944	NM_023239	ENSMUSG00000070520	Nsmce3	5730494G16Rik|AI642138|BB044375|HCA4|Mageg1|Ndnl2|mage-g1	NSE3 homolog, SMC5-SMC6 complex component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80688247-4	chr7	80688106	80688306	+	844.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173863, intron 1 of 14)	CpG	671.0	NM_173863	70461.0	Mm.392175	NM_173863	ENSMUSG00000030527	Crtc3	2610312F20Rik|6332415K15Rik|AI429792|BC011210|TORC3	CREB regulated transcription coactivator 3	protein-coding	2.59153643467717	1.21057761968461	1.44629124383312	1.79556893583994	2.85768176919403	1.21809031081572	2.0282227818965	2.94791307254821	1.21773204410669	0.255839533775832	0.754347336004447
Merged-chr16-11005637-1	chr16	11005537	11005737	+	623.0	f0_balb.idr	Intergenic	B3|SINE|B2	-3261.0	NR_040518	100043147.0	Mm.489001	NR_040518	ENSMUSG00000097056	Gm4262	-	predicted gene 4262	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-38271404-4	chr7	38271238	38271438	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025390)	promoter-TSS (NM_025390)	10.0	NM_025390	66161.0	Mm.22284	NM_025390	ENSMUSG00000030423	Pop4	1110023P21Rik|Rpp29	processing of precursor 4, ribonuclease P/MRP family, (S. cerevisiae)	protein-coding	4.77374440727289	3.97701154283493	3.36459868981026	4.07459436160968	5.25353122590852	5.13722728624795	3.39383777817357	3.82539669119875	0.617210127339898	0.238391829936016	0.734898554874698
Merged-chr13-20292523-4	chr13	20292441	20292641	+	954.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 13 of 21)	intron (NM_080288, intron 13 of 21)	-180449.0	NM_198093	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	2.49577878753919	2.17561002024517	2.11101721604356	2.7076369326942	2.67230161910129	2.18994952608512	2.12540377456114	2.86677808058297	0.253914093788576	0.752001660646899	0.998431161219273
Merged-chr16-57345001-4	chr16	57344903	57345103	+	864.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025599, intron 1 of 9)	MERVL_2A-int|LTR|ERVL	-8274.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-36072796-2	chr12	36072696	36072896	+	810.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-17583.0	NR_003649	432649.0	Mm.347860	NM_001014396	ENSMUSG00000059301	Gm5434	EG432649	ubiquitin-conjugating enzyme E2F (putative) pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-148676393-4	chr4	148676299	148676499	+	939.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33082.0	NM_001085505	230909.0	Mm.332067	NM_001085505	ENSMUSG00000070577	Gm572	b2b1167Clo	predicted gene 572	protein-coding	4.68368136735503	3.91023693840238	4.28472192397021	4.27183537743619	3.2652587669122	3.57700629992307	4.08768321160789	3.52971331266672	-0.940149613413732	0.0427342090127764	0.296358721506814
Merged-chr9-106373092-4	chr9	106372958	106373158	+	838.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153459, intron 2 of 2)	intron (NM_153459, intron 2 of 2)	4426.0	NM_153459	235584.0	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	1.17253179055957	1.30021592333177	1.5229179513972	1.58244118675628	1.67893229157769	1.13123628877914	0.90292186561734	1.3675304082585	-0.353152909654602	0.777711700703359	0.998431161219273
Merged-chr6-67181164-2	chr6	67181064	67181264	+	707.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16_Mm|LTR|ERVK	-85815.0	NM_001113566	66870.0	Mm.240490	NM_025814	ENSMUSG00000036371	Serbp1	1200009K13Rik|9330147J08Rik|AL022786|Pairbp1	serpine1 mRNA binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-80579540-4	chr2	80579480	80579680	+	872.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290745, intron 1 of 31)	intron (NM_001290745, intron 1 of 31)	1602.0	NM_001290745	50884.0	Mm.25203	NM_016965	ENSMUSG00000027002	Nckap1	C79304|H19|Hem-2|Hem2|Nap1|mKIAA0587|mh19|p125Nap1	NCK-associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-118576928-1	chr2	118576828	118577028	+	614.0	f1_balb.idr	Intergenic	Intergenic	-21283.0	NM_009773	12236.0	Mm.29133	NM_009773	ENSMUSG00000040084	Bub1b	AU045529|BUBR1	BUB1B, mitotic checkpoint serine/threonine kinase	protein-coding	-0.550981302827592	-0.539434618073592	0.0292215287706114	-0.00967665985332372	-0.550261361667563	-0.538580829647548	-0.542385759346252	-0.545629670779169	-3.42814957232975	0.21233619833444	1
Merged-chr16-33166492-1	chr16	33166392	33166592	+	574.0	f0_balb.idr	Intergenic	B3|SINE|B2	-18579.0	NM_176840	106326.0	Mm.486405	NM_176840	ENSMUSG00000022807	Osbpl11	9430097N02Rik|AI132306|AU019795|ORP-11	oxysterol binding protein-like 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-55430828-3	chr1	55430736	55430936	+	987.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114663, intron 1 of 5)	intron (NM_001114663, intron 1 of 5)	24890.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-56265288-3	chr19	56265185	56265385	+	781.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-22627.0	NM_001329936	226243.0	Mm.25791	NM_146101	ENSMUSG00000025075	Habp2	AI035669|FSAP|HABP|HGFAL|PHBP	hyaluronic acid binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-28478816-3	chr2	28478699	28478899	+	915.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10733.0	NM_001166031	118451.0	Mm.294951	NM_080452	ENSMUSG00000035772	Mrps2	1500019M10Rik	mitochondrial ribosomal protein S2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-105570088-2	chr5	105569988	105570188	+	800.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_133897, intron 2 of 3)	intron (NM_133897, intron 2 of 3)	50617.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-104442955-4	chr11	104442850	104443050	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081045)	promoter-TSS (NM_001081045)	-659.0	NM_001081045	76719.0	Mm.136418	NM_001081045	ENSMUSG00000018412	Kansl1	1700081L11Rik|9430041J06Rik|mKIAA1267	KAT8 regulatory NSL complex subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-66304147-4	chr7	66304040	66304240	+	999.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146191, intron 10 of 33)	intron (NM_146191, intron 10 of 33)	77584.0	NR_106024	102465640.0		NR_106024	ENSMUSG00000098353	Mir7057	Gm27550|mmu-mir-7057	microRNA 7057	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-12460355-3	chr4	12460260	12460460	+	644.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-288345.0	NM_026558	68099.0	Mm.25340	NM_026558	ENSMUSG00000028218	Fam92a	6720467C03Rik|Fam92a1	family with sequence similarity 92, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81951867-1	chr15	81951767	81951967	+	831.0	f1_c57bl6.idr	TTS (NM_145473)	TTS (NM_145473)	9063.0	NM_001282040	29858.0	Mm.18939	NM_013872	ENSMUSG00000022474	Pmm1	C77612	phosphomannomutase 1	protein-coding	-2.05752322593321	-2.15521190974092	-2.16307242109104	-2.16952927915413	-2.17938029103484	-2.15350850414045	-2.16129297361887	-2.16837350464794	-0.683654500252594	0.846597994014493	1
Merged-chr14-30248238-2	chr14	30248138	30248338	+	595.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083616, intron 3 of 46)	intron (NM_001083616, intron 3 of 46)	105248.0	NM_001302637	12289.0	Mm.9772	NM_028981	ENSMUSG00000015968	Cacna1d	8430418G19Rik|C79217|Cach3|Cacn4|Cacnl1a2|Cav1.3|Cchl1a|Cchl1a2|D-LTCC	calcium channel, voltage-dependent, L type, alpha 1D subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-9903139-1	chr1	9903039	9903239	+	605.0	f0_balb.idr	TTS (NM_177547)	TTS (NM_177547)	-5499.0	NM_177722	240697.0	Mm.259800	NM_177722	ENSMUSG00000046101	Mcmdc2	6030422M02Rik	minichromosome maintenance domain containing 2	protein-coding	-1.2111396805985	-1.32488695513244	-1.33469168374779	-1.34274557975998	-0.971233355067795	-1.32276222954009	-1.3324721081028	-1.34130393622446	1.06681499898033	0.75787734025643	1
Merged-chr2-51305548-5	chr2	51305375	51305575	+	916.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	63644.0	NR_040636	329404.0	Mm.417725	NR_040636	ENSMUSG00000086349	Gm13497	A730015I17	predicted gene 13497	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-113787915-2	chr5	113787815	113788015	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	12437.0	NM_146162	231633.0	Mm.41681	NM_146162	ENSMUSG00000054675	Tmem119	AW208946|BC025600|obif	transmembrane protein 119	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-90116305-1	chr9	90116205	90116405	+	555.0	f1_balb.idr	Intergenic	B1_Mus1|SINE|Alu	-1485.0	NM_024431	21761.0	Mm.426209	NM_024431	ENSMUSG00000062270	Morf4l1	MORFRG15|MRG15|TEG-189|Tex189|mKIAA4002	mortality factor 4 like 1	protein-coding	0.13381935699702	-0.581217411626874	-0.585022678744509	-0.587959147612707	-0.592109621184925	-0.210918890998067	-0.584183322721713	-0.587446117101362	-1.34011444621094	0.638265873579524	1
Merged-chr7-110114844-2	chr7	110114744	110114944	+	959.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7215.0	NM_001355058	22390.0	Mm.287173	NM_009516	ENSMUSG00000031016	Wee1	Wee1A	WEE 1 homolog 1 (S. pombe)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10842454-4	chr19	10842349	10842549	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023044)	promoter-TSS (NM_023044)	-95.0	NM_023044	65221.0	Mm.27387	NM_023044	ENSMUSG00000024737	Slc15a3	Ci1|cI-1	solute carrier family 15, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-118101304-4	chr10	118101202	118101402	+	888.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40485.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-122782340-4	chr10	122782292	122782492	+	838.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110218, intron 2 of 9)	intron (NM_001110218, intron 2 of 9)	103077.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	1.78931850698157	2.1371721351553	2.23315690822943	1.66894921360159	0.950334469013383	1.01675450899699	1.59332847820481	1.20104028938141	-2.66945670474679	0.0284558519045162	0.228624985145348
Merged-chr2-120973043-1	chr2	120972943	120973143	+	614.0	f1_balb.idr	Intergenic	MTC|LTR|ERVL-MaLR	-2328.0	NM_009461	22222.0	Mm.389330	NM_009461	ENSMUSG00000027272	Ubr1	AI504731	ubiquitin protein ligase E3 component n-recognin 1	protein-coding	1.67314983866719	1.65029431877669	1.81795601314869	1.7655897906063	2.77355045860599	2.41033535915625	3.21147569369046	2.98628715428189	2.71900523624171	0.00172546106593447	0.0300030172015679
Merged-chr2-154773210-2	chr2	154773110	154773310	+	857.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR40c|LTR|ERVL	-17900.0	NM_001139512	19383.0	Mm.221440	NM_023130	ENSMUSG00000027593	Raly	AI663842|Merc	hnRNP-associated with lethal yellow	protein-coding	2.28247176468512	1.12620065467075	1.09974994379345	2.15707389119011	2.37372197012231	1.13202162098173	1.7385392765132	2.42824910184028	0.572894221169165	0.632938118097261	0.982235691247426
Merged-chr14-55900211-3	chr14	55900094	55900294	+	805.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001082975)	promoter-TSS (NM_001082975)	38.0	NM_001082975	654795.0	Mm.486218	NM_001082975	ENSMUSG00000022223	Sdr39u1	2310014G06Rik	short chain dehydrogenase/reductase family 39U, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-9782603-1	chr3	9782503	9782703	+	596.0	f0_balb.idr	intron (NM_053182, intron 1 of 7)	intron (NM_053182, intron 1 of 7)	51076.0	NM_053182	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-115165617-1	chr12	115165517	115165717	+	637.666687	f1_c57bl6.idr	Intergenic	Intergenic	530177.0	NR_105810	102465205.0		NR_105810	ENSMUSG00000098336	Mir6388	Gm27925|mmu-mir-6388	microRNA 6388	ncRNA	1.63446566472015	1.5543999467332	0.594775029208563	1.0944760469834	1.15098234795838	0.610230185479032	0.597582858709698	0.586601360915476	-2.35432376242298	0.151275899229742	0.604331267133776
Merged-chr2-71500056-4	chr2	71499982	71500182	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025633, intron 1 of 9)	intron (NM_025633, intron 1 of 9)	-29363.0	NM_010053	13390.0	Mm.475101	NM_010053	ENSMUSG00000041911	Dlx1	Dlx|Dlx-1	distal-less homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-90377626-1	chr16	90377526	90377726	+	585.0	f0_balb.idr	Intergenic	Intergenic	-8771.0	NM_015755	26559.0	Mm.125874	NM_015755	ENSMUSG00000053414	Hunk	Bstk1|Mak-v	hormonally upregulated Neu-associated kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-4657720-3	chr7	4657652	4657852	+	685.366699	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172894, intron 1 of 23)	L2c|LINE|L2	1198.0	NM_172894	243819.0	Mm.258670	NM_172894	ENSMUSG00000052296	Ppp6r1	2010309P17Rik|AI836219|B430201G11Rik|D030074N20Rik|Pp6r1|Saps1|mKIAA1115	protein phosphatase 6, regulatory subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-43801981-3	chr5	43801903	43802103	+	817.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Charlie9|DNA|hAT-Charlie	-16890.0	NM_009763	12182.0	Mm.246332	NM_009763	ENSMUSG00000029082	Bst1	114/A10|A530073F09|BP-3|Bp3|Bsta1|CD157|Ly65	bone marrow stromal cell antigen 1	protein-coding	3.91408002580172	5.39610323694846	4.38929067969908	3.19547091328171	3.64144758382748	3.0486573196997	3.7184236927543	4.1393028377613	-1.02301823043181	0.0643279427068237	0.378707878604745
Merged-chr10-63246180-2	chr10	63246080	63246280	+	661.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359484, intron 3 of 22)	intron (NM_001359484, intron 3 of 22)	2383.0	NM_001359484	67345.0	Mm.234437	NM_026101	ENSMUSG00000020064	Herc4	1700056O17Rik|4921531D01Rik|9530080M15Rik|mKIAA1593	hect domain and RLD 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-17881047-3	chr16	17880939	17881139	+	869.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109750, intron 1 of 9)	B4A|SINE|B4	10689.0	NM_010048	13356.0	Mm.254515	NM_010048	ENSMUSG00000003166	Dgcr2	9930034O06Rik|DGS-C|Dgsc|Idd|Lan|Sez12|mKIAA0163	DiGeorge syndrome critical region gene 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-59365486-4	chr14	59365385	59365585	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199015)	promoter-TSS (NM_199015)	5.0	NM_199015	219132.0	Mm.479285	NM_199015	ENSMUSG00000068245	Phf11d	D14Ertd668e|Phf11|Phf11l	PHD finger protein 11D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-43853441-4	chr5	43853325	43853525	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15384.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	-1.1000153649687	-1.07922802209952	-1.09015834808889	-1.09695034511635	-0.83418652570522	-1.07685937486068	-1.08768396187082	-0.67530516418638	2.65610859557207	0.40904259789681	1
Merged-chr18-4891999-1	chr18	4891899	4892099	+	560.0	f0_balb.idr	Intergenic	MTD|LTR|ERVL-MaLR	79513.0	NR_045881	100038439.0	Mm.387569	NR_045881	ENSMUSG00000097043	Gm10556	-	predicted gene 10556	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-96565533-2	chr15	96565433	96565633	+	807.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	76429.0	NM_134086	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-34665000-3	chr12	34664908	34665108	+	715.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271386, intron 3 of 27)	intron (NM_001271386, intron 3 of 27)	-136119.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	0.249553828436167	1.33185059483054	0.27095827505613	0.263005650318943	0.25157547500409	1.0152696608032	0.958045914490343	0.264402848708808	0.15842705786977	0.935682122536853	1
Merged-chr6-90740850-4	chr6	90740749	90740949	+	788.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356440, intron 1 of 13)	intron (NM_001356440, intron 1 of 13)	-24320.0	NM_001134383	232227.0	Mm.196943	NM_182784	ENSMUSG00000034312	Iqsec1	AW561907|BC026481|BRAG2|D6Ertd349e|cI-43	IQ motif and Sec7 domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-98614008-2	chr15	98613908	98614108	+	692.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6375.0	NM_007405	11512.0	Mm.157091	NM_007405	ENSMUSG00000022994	Adcy6	AC6|mKIAA0422	adenylate cyclase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-33877525-2	chr1	33877425	33877625	+	825.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_177235, intron 3 of 6)	ORR1A3|LTR|ERVL-MaLR	30096.0	NM_177235	320705.0	Mm.336619	NM_177235	ENSMUSG00000042182	Bend6	B230209C24Rik	BEN domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-95548286-4	chr10	95548209	95548409	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_027722, exon 5 of 5)	3' UTR (NM_027722, exon 5 of 5)	11012.0	NR_037212	100526463.0		NR_037212	ENSMUSG00000092867	Mir3058	mir-3058|mmu-mir-3058	microRNA 3058	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-23440178-2	chr13	23440078	23440278	+	805.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-9161.0	NR_015492	320842.0	Mm.487476	NR_015492	ENSMUSG00000085024	C230035I16Rik	-	RIKEN cDNA C230035I16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-12008944-2	chr19	12008844	12009044	+	772.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27796.0	NM_146680	258675.0	Mm.271517	NM_146680	ENSMUSG00000067529	Olfr1423	MOR239-3	olfactory receptor 1423	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-145913448-2	chr3	145913348	145913548	+	543.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10814.0	NM_009740	12042.0	Mm.239141	NM_009740	ENSMUSG00000028191	Bcl10	AI132454|BCL-10|C81403|CARMEN|CIPER|CLAP|ME10|cE10	B cell leukemia/lymphoma 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-30864527-1	chr5	30864427	30864627	+	651.0	f0_balb.idr	intron (NM_133350, intron 4 of 6)	intron (NM_133350, intron 4 of 6)	2720.0	NM_001310516	100732.0	Mm.332295	NM_133350	ENSMUSG00000029166	Mapre3	AI790651|EB2|EB3|EBF3|RP3	microtubule-associated protein, RP/EB family, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-51911407-1	chr1	51911307	51911507	+	681.0	f0_balb.idr	intron (NM_010863, intron 1 of 29)	intron (NM_010863, intron 1 of 29)	4571.0	NM_001161817	17912.0	Mm.3390	NM_010863	ENSMUSG00000018417	Myo1b	AA406997|MIH-L|MMIa	myosin IB	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-59119869-4	chr1	59119744	59119944	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001037812)	promoter-TSS (NM_001037812)	-38.0	NM_001037812	381259.0	Mm.261275	NM_001033449	ENSMUSG00000038079	Tmem237	AI853305|Als2cr4|Gm972	transmembrane protein 237	protein-coding	0.390469649714408	0.419191150631009	0.607881528198298	1.27816056905867	0.698902605750807	0.421274400215021	0.613656169709533	1.28806988217504	0.306289655448775	0.857799446462426	1
Merged-chr10-126979589-6	chr10	126979538	126979738	+	922.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113470, intron 1 of 7)	CpG	921.0	NM_001113470	52468.0	Mm.29490	NM_146012	ENSMUSG00000078429	Ctdsp2	AI586070|D10Ertd73e|OS-4|OS4|SCP2	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-25480591-2	chr9	25480491	25480691	+	807.4375	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1006.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-103916671-4	chr3	103916570	103916770	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356557, intron 1 of 6)	intron (NM_001356557, intron 1 of 6)	2550.0	NM_172684	229675.0	Mm.29366	NM_172684	ENSMUSG00000044098	Rsbn1	C230004D03Rik|E330004N01|KDM9|Rosbin|Rsbn|Rsbp|mKIAA3002	rosbin, round spermatid basic protein 1	protein-coding	4.2404684372653	4.67781007356324	5.26949295123323	4.55572374273556	5.03771248903499	4.81137757351144	4.96602917697973	4.70990447056576	0.190549620008884	0.594896141972466	0.971009057416876
Merged-chr6-145274308-4	chr6	145274207	145274407	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23755.0	NR_045598	100039495.0	Mm.121014	NR_045598	ENSMUSG00000086013	Gm15706	-	predicted gene 15706	ncRNA	4.18491533176894	3.49647361831151	4.69464924779471	3.14447763562149	3.90074497574293	4.6425034596444	5.42114820586005	4.37063254962232	0.873132050964224	0.0796709334539604	0.429260920861999
Merged-chr11-3142608-4	chr11	3142598	3142798	+	922.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030207, intron 20 of 32)	intron (NM_030207, intron 20 of 32)	18677.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-72831171-3	chr5	72831066	72831266	+	748.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013689, intron 1 of 17)	HAL1|LINE|L1	37282.0	NM_001113461	21682.0	Mm.319581	NM_013689	ENSMUSG00000029217	Tec	-	tec protein tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-189871772-3	chr1	189871570	189871770	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008976, exon 19 of 19)	3' UTR (NM_008976, exon 19 of 19)	50621.0	NM_026796	226830.0	Mm.156895	NM_026796	ENSMUSG00000026603	Smyd2	1110020E07Rik|4930402C15|KMT3C|Zmynd14	SET and MYND domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-6541401-2	chr2	6541301	6541501	+	621.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001110230, exon 15 of 15)	3' UTR (NM_001110230, exon 15 of 15)	180261.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-79370771-4	chr8	79370644	79370844	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008539, intron 2 of 6)	intron (NM_008539, intron 2 of 6)	28724.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-57972310-2	chr15	57972210	57972410	+	596.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13593.0	NM_173862	239463.0	Mm.221241	NM_173862	ENSMUSG00000051225	Fam83a	-	family with sequence similarity 83, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-181950913-4	chr1	181950809	181951009	+	866.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010135, intron 3 of 14)	intron (NM_010135, intron 3 of 14)	69071.0	NM_010135	13800.0	Mm.87759	NM_008680	ENSMUSG00000022995	Enah	Mena|NDPP-1|Ndpp1|WBP8	ENAH actin regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-69716529-4	chr8	69716424	69716624	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001359086, exon 1 of 6)	5' UTR (NM_001359086, exon 1 of 6)	378.0	NM_001039967	66869.0	Mm.334581	NM_181274	ENSMUSG00000054648	Zfp869	1200003I07Rik	zinc finger protein 869	protein-coding	5.58525668234915	5.43666369192149	5.06480954561041	5.54086283266181	5.90529543201012	4.80288607753163	5.31351808308019	5.61249959940256	0.0625297622888798	0.838143812768111	0.998431161219273
Merged-chr10-42245081-4	chr10	42244980	42245180	+	952.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019740, intron 2 of 3)	intron (NM_019740, intron 2 of 3)	31662.0	NM_019740	56484.0	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135480734-2	chr5	135480634	135480834	+	613.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146001, intron 1 of 30)	AT_rich|Low_complexity|Low_complexity	64388.0	NM_146001	215114.0	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5928792-3	chr19	5928654	5928854	+	868.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3938.0	NM_026772	104252.0	Mm.491103	NM_026772	ENSMUSG00000045664	Cdc42ep2	1110008C05Rik|Borg1|Cep2|D19Bwg1013e	CDC42 effector protein (Rho GTPase binding) 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-66871705-4	chr14	66871523	66871723	+	929.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001034881)	TTS (NM_001034881)	2773.0	NM_001034881	432870.0	Mm.425890	NM_001034881	ENSMUSG00000075553	Gm5464	EG432870	predicted gene 5464	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-55644138-2	chr4	55644038	55644238	+	646.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-111663.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	-1.17367364971587	-1.14665061133654	-1.15856004380685	-1.16834280623128	-1.17310571790619	-1.14406978763884	-0.42938571406771	-1.16659169643457	2.89727187181404	0.396361616615464	1
Merged-chr10-128516853-2	chr10	128516753	128516953	+	672.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011843, intron 18 of 30)	intron (NM_011843, intron 18 of 30)	-4823.0	NR_105881	102465552.0		NR_105881	ENSMUSG00000099292	Mir6916	Gm27721|mmu-mir-6916	microRNA 6916	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-118137576-2	chr4	118137476	118137676	+	570.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001161823, exon 22 of 22)	3' UTR (NM_001161823, exon 22 of 22)	-2630.0	NM_001161774	20441.0	Mm.251002	NM_009176	ENSMUSG00000028538	St3gal3	ST3GalIII|ST3N|Siat3|Siat6	ST3 beta-galactoside alpha-2,3-sialyltransferase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46596859-2	chr8	46596759	46596959	+	597.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001184, intron 6 of 14)	RLTR25A|LTR|ERVK	20368.0	NM_001001184	408022.0	Mm.217385	NM_001001184	ENSMUSG00000038225	Primpol	BC065112|Ccdc111	primase and polymerase (DNA-directed)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-67244681-2	chr7	67244581	67244781	+	622.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357324, intron 8 of 11)	intron (NM_001357324, intron 8 of 11)	22065.0	NM_001191051	75099.0	Mm.121691	NM_175215	ENSMUSG00000043831	Lysmd4	4930506D23Rik	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-19563310-3	chr8	19563230	19563430	+	905.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	68233.0	NM_139220	246080.0	Mm.207067	NM_139220	ENSMUSG00000037790	Defb7	BD-7|Defb15	defensin beta 7	protein-coding	1.41506497134938	0.737402272239452	1.08813708374362	1.19040278635599	1.13412247035587	0.740014750528577	1.66641876155055	0.905467936768388	0.155112076762295	0.912712130588803	0.998431161219273
Merged-chr10-82959362-1	chr10	82959262	82959462	+	623.0	f1_balb.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	-26135.0	NM_021439	58250.0	Mm.360747	NM_021439	ENSMUSG00000034612	Chst11	1110020P09Rik|C4ST|C4ST-1|C4ST1|C4s	carbohydrate sulfotransferase 11	protein-coding	0.821305874252628	0.512194638610997	1.78889988227343	0.487497718620768	0.970199701738055	1.52983851437395	0.501463038669953	0.489416089432533	-0.321820439302751	0.846693513902055	0.998431161219273
Merged-chr18-67666930-1	chr18	67666830	67667030	+	583.5	f1_balb.idr	3' UTR (NM_001127177, exon 9 of 9)	3' UTR (NM_001127177, exon 9 of 9)	25331.0	NM_134138	107047.0	Mm.150701	NM_134138	ENSMUSG00000024537	Psmg2	1700017I17Rik|AW545363|Clast3|Tnfsf5ip1	proteasome (prosome, macropain) assembly chaperone 2	protein-coding	-0.715674495481617	-1.16652013923994	-1.17730573498469	-1.18616534446147	-1.19112753349182	-0.994476195557721	-1.17486411252161	-1.18457947860102	-1.39554850672784	0.672255398016256	1
Merged-chr6-15626325-4	chr6	15626235	15626435	+	831.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-94326.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84971280-2	chr8	84971141	84971341	+	624.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001317385, intron 3 of 5)	intron (NM_001317385, intron 3 of 5)	1619.0	NM_011563	21672.0	Mm.347009	NM_011563	ENSMUSG00000005161	Prdx2	AL022839|Band-8|NkefB|PRP|PrxII|TDX1|TPx|TPx-B|TR|TSA|Tdpx1|Torin	peroxiredoxin 2	protein-coding	1.8490235791666	0.946902191440481	0.917020252824177	2.17864746786582	0.856909122543395	2.55201324842609	0.923741710438843	2.71559600883733	1.11090274261762	0.639126219371338	0.982599433509505
Merged-chr15-99833350-2	chr15	99833250	99833450	+	684.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113545, intron 2 of 10)	intron (NM_001113545, intron 2 of 10)	-13201.0	NM_023063	65970.0	Mm.33207	NM_023063	ENSMUSG00000023022	Lima1	Eplin	LIM domain and actin binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-37584783-3	chr3	37584706	37584906	+	930.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25085.0	NR_130162	75947.0	Mm.109620	NR_130161	ENSMUSG00000085677	4930594O21Rik	-	RIKEN cDNA 4930594O21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80091940-2	chr7	80091840	80092040	+	856.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001146000, exon 6 of 6)	3' UTR (NM_001146000, exon 6 of 6)	-16683.0	NR_045695	100859962.0	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-45051313-4	chr10	45051195	45051395	+	867.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15919.0	NM_011156	19072.0	Mm.10281	NM_011156	ENSMUSG00000019849	Prep	AI047692|AI450383|D10Wsu136e|PEP|Pop	prolyl endopeptidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43820377-4	chr4	43820273	43820473	+	820.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_019474)	TTS (NM_019474)	1060.0	NM_019474	29846.0	Mm.377121	NM_019474	ENSMUSG00000110970	Olfr156	MOR262-6|OR37B|Olfr37b|mOR37b	olfactory receptor 156	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-8759384-4	chr10	8759286	8759486	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 8 of 19)	intron (NM_175155, intron 8 of 19)	126684.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	5.57528549527665	5.5611443989307	5.07623720883914	5.24445145218297	5.15972391473813	5.18933152054809	4.99547198470698	4.81507276913517	-0.391080925389065	0.189185637371928	0.667555616405381
Merged-chr19-7922561-1	chr19	7922461	7922661	+	902.0	f0_balb.idr	intron (NM_134256, intron 3 of 10)	L1_Mus2|LINE|L1	43466.0	NM_134256	171405.0	Mm.326517	NM_134256	ENSMUSG00000067656	Slc22a27	OAT6-L|OAT6-S|Oat9	solute carrier family 22, member 27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-33493218-2	chr17	33493118	33493318	+	615.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30867.0	NR_137628	224697.0	Mm.29304	NM_172619	ENSMUSG00000024299	Adamts10	9430006O18|AW045948|Adam-ts10|Adamts-10|Znmp	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 10	protein-coding	-0.0211443283984232	-0.641664752310627	-0.645034587532555	-0.647629074951804	-0.274124372481926	-0.640904061703657	-0.644292024290792	-0.647176169770092	-0.932984113643968	0.749082239155901	1
Merged-chr14-75183037-1	chr14	75182937	75183137	+	783.333313	f0_balb.idr	intron (NM_008879, intron 2 of 16)	intron (NM_008879, intron 2 of 16)	46612.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-32034267-3	chr9	32034137	32034337	+	774.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-81899.0	NM_001195632	330914.0	Mm.46683	NM_177379	ENSMUSG00000041444	Arhgap32	3426406O18Rik|Gc-gap|Grit|Px-rics|Rics|mKIAA0712|p200Rhogap|p250Gap	Rho GTPase activating protein 32	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-107966391-2	chr5	107966291	107966491	+	659.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_026062, intron 1 of 4)	intron (NM_026062, intron 1 of 4)	20686.0	NM_026062	67266.0	Mm.277897	NM_026062	ENSMUSG00000029270	Fam69a	2900024C23Rik|AI315274	family with sequence similarity 69, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-84442405-2	chr11	84442305	84442505	+	705.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019816, intron 12 of 12)	intron (NM_019816, intron 12 of 12)	71096.0	NM_019816	56321.0	Mm.257482	NM_019816	ENSMUSG00000018697	Aatf	4933415H02Rik|5830465M17Rik|Che-1|Trb	apoptosis antagonizing transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-30003535-2	chr17	30003435	30003635	+	767.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1504.0	NM_148926	21769.0	Mm.220972	NM_148926	ENSMUSG00000044477	Zfand3	AW539211|TEG-27|Tex27	zinc finger, AN1-type domain 3	protein-coding	1.62108181784822	0.283318848872116	0.49294680921192	0.264287549563866	0.594282318668467	0.888681688279081	0.275025317938977	0.265758776754923	-1.32699387917273	0.465803488240597	0.922736970596151
Merged-chr19-53157389-2	chr19	53157289	53157489	+	796.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013758, intron 1 of 15)	intron (NM_013758, intron 1 of 15)	13392.0	NM_013758	27360.0	Mm.426080	NM_013758	ENSMUSG00000025026	Add3	AI463285|R75380	adducin 3 (gamma)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-160366262-2	chr2	160366162	160366362	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_010658, exon 1 of 1)	exon (NM_010658, exon 1 of 1)	803.0	NM_010658	16658.0	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-24500441-2	chr9	24500341	24500541	+	981.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359948, intron 1 of 22)	intron (NM_001359948, intron 1 of 22)	2699.0	NM_001359948	244745.0	Mm.38526	NM_172920	ENSMUSG00000043067	Dpy19l1	1100001I19Rik|6030402K12|AI225861|AW558481	dpy-19-like 1 (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-6067575-3	chr15	6067483	6067683	+	887.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22879.0	NR_155429	105245876.0	Mm.128197	NR_155428		Gm41259	-	predicted gene, 41259	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-180964225-4	chr2	180964128	180964328	+	875.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2997.0	NM_145760	228998.0	Mm.33765	NM_145760	ENSMUSG00000027575	Arfgap1	AI115377|Arf1gap	ADP-ribosylation factor GTPase activating protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-22744427-2	chr10	22744327	22744527	+	572.791626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12980.0	NM_011603	237336.0	Mm.86670	NM_011603	ENSMUSG00000071359	Tbpl1	4732475G08|AW011832|AW491032|D18347|STD|TLF|TRF2|TRP|Tlp	TATA box binding protein-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-16549619-2	chr18	16549519	16549719	+	584.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	259627.0	NM_007664	12558.0	Mm.257437	NM_007664	ENSMUSG00000024304	Cdh2	CDHN|N-CAD|Ncad	cadherin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-70856293-2	chr17	70856193	70856393	+	555.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2761.0	NM_001164074	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-122820987-1	chr10	122820887	122821087	+	914.0	f0_balb.idr	intron (NM_001110218, intron 4 of 9)	intron (NM_001110218, intron 4 of 9)	141672.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-84821482-2	chr11	84821382	84821582	+	651.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_177564, intron 5 of 6)	intron (NM_177564, intron 5 of 6)	-1967.0	NM_145433	217038.0	Mm.280825	NM_145433	ENSMUSG00000018405	Mrm1	A530065E19Rik	mitochondrial rRNA methyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-17201296-4	chr10	17201186	17201386	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-105504.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	2.5823319060391	2.9178338888429	3.96223803163636	2.73162082135828	2.82506900125152	3.17908711256767	3.99069105733517	2.61445959328029	0.145124089573311	0.83212582484131	0.998431161219273
Merged-chr19-53140552-3	chr19	53140441	53140641	+	812.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164099)	promoter-TSS (NM_001164099)	98.0	NM_001164101	27360.0	Mm.426080	NM_013758	ENSMUSG00000025026	Add3	AI463285|R75380	adducin 3 (gamma)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-106185216-2	chr13	106185116	106185316	+	624.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur1|LINE|L1	741523.0	NM_008308	15550.0	Mm.4716	NM_008308	ENSMUSG00000021721	Htr1a	Gpcr18	5-hydroxytryptamine (serotonin) receptor 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-152087903-4	chr4	152087767	152087967	+	899.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104381, intron 2 of 21)	intron (NR_104381, intron 2 of 21)	1004.0	NR_104381	269608.0	Mm.332102	NM_001004156	ENSMUSG00000039713	Plekhg5	BC023181|Syx	pleckstrin homology domain containing, family G (with RhoGef domain) member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-39442514-4	chr18	39442452	39442652	+	732.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008173, intron 1 of 7)	intron (NM_008173, intron 1 of 7)	44693.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24849377-3	chr17	24849311	24849511	+	833.299988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_023480, exon 1 of 1)	3' UTR (NM_023480, exon 1 of 1)	891.0	NM_023480	68636.0	Mm.347964	NM_023480	ENSMUSG00000045316	Fahd1	1110025H10Rik|AV002085	fumarylacetoacetate hydrolase domain containing 1	protein-coding	0.252448350852788	0.604229539200267	0.445345879237928	0.00239235093444803	0.258878312067979	0.0124362514458461	0.00737670574917376	0.00306890196543205	-2.3208717189858	0.280729594736349	1
Merged-chr19-29431663-4	chr19	29431550	29431750	+	819.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021396, intron 2 of 5)	MTEb|LTR|ERVL-MaLR	20731.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-23917036-1	chr1	23916936	23917136	+	585.5	f0_c57.idr	intron (NM_001357395, intron 1 of 10)	RMER4B|LTR|ERVK	5345.0	NM_001357395	98366.0	Mm.329963	NM_028534	ENSMUSG00000026155	Smap1	1700056O10Rik|4921514B13Rik|4921525H11Rik|AI462175	small ArfGAP 1	protein-coding	1.68282585757485	1.46894949365212	1.01737833505013	2.21269215323773	1.69749325319749	1.47937003027529	1.02151329597367	1.98717569108597	-0.248941310594152	0.83757065051316	0.998431161219273
Merged-chr9-36726680-4	chr9	36726543	36726743	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007691)	promoter-TSS (NM_007691)	15.0	NM_007691	12649.0	Mm.16753	NM_007691	ENSMUSG00000032113	Chek1	C85740|Chk1|rad27	checkpoint kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-61097915-1	chr19	61097815	61098015	+	635.0	f0_balb.idr	intron (NR_131953, intron 3 of 6)	intron (NR_131953, intron 3 of 6)	42925.0	NR_131956	414758.0	Mm.100056	NM_001001737	ENSMUSG00000074733	Zfp950	5830428H23Rik|AU016073|BC055757|Gm34518|Zfp826|mszf84	zinc finger protein 950	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-164868652-4	chr2	164868564	164868764	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-10704.0	NM_146129	228866.0	Mm.241134	NM_146129	ENSMUSG00000039849	Pcif1	2310022K11Rik|C20orf67|F730014I05Rik	PDX1 C-terminal inhibiting factor 1	protein-coding	5.78172589930406	5.58880582161487	5.99231307340578	6.36324164506124	6.50966814058323	6.94053126780417	6.66800989518415	6.69081754293109	0.80189380138206	0.00035017046350699	0.00831400769358219
Merged-chr16-39432151-2	chr16	39432051	39432251	+	571.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-243201.0	NR_153800	102640746.0		NR_153800		Gm36742	-	predicted gene, 36742	ncRNA	2.12270227565592	1.78410993942508	3.09084303064506	1.99584246421332	2.33299963939606	1.79702413231579	2.32867504718808	1.23654610902968	-0.831705281047907	0.394804716950101	0.882837719236596
Merged-chr2-166472749-2	chr2	166472649	166472849	+	990.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25298.0	NR_015558	319684.0	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31790972-2	chr14	31790872	31791072	+	912.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001024604, intron 1 of 27)	intron (NM_001024604, intron 1 of 27)	39443.0	NM_001024604	105522.0	Mm.37660	NM_001024604	ENSMUSG00000014496	Ankrd28	AI465466|AI604979|E430019N21Rik|mKIAA0379	ankyrin repeat domain 28	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-45655525-2	chr14	45655424	45655624	+	746.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_176845, intron 1 of 12)	intron (NM_176845, intron 1 of 12)	2529.0	NR_039593	100628600.0		NR_039593	ENSMUSG00000093167	Mir5131	mmu-mir-5131|mu-mir-5131	microRNA 5131	ncRNA	2.01447464078386	1.59500936905263	2.50200214395972	0.898167651625558	1.41568474235847	0.943463768777567	0.921092379700536	1.76218338887157	-1.70035544628614	0.186260644849727	0.663210954536338
Merged-chr16-24826574-4	chr16	24826456	24826656	+	939.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 8 of 12)	intron (NM_178665, intron 8 of 12)	104701.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4681553-2	chr16	4681453	4681653	+	946.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR33|LTR|ERVK	-1833.0	NM_030205	78885.0	Mm.325512	NM_030205	ENSMUSG00000039637	Coro7	0610011B16Rik|AW048373|AW556392	coronin 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127233155-4	chr7	127233048	127233248	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_030674)	promoter-TSS (NR_030674)	-18.0	NR_030674	100043580.0	Mm.482209	NR_030674	ENSMUSG00000000486	Gm4532	-	predicted gene 4532	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-91087067-4	chr1	91086900	91087100	+	853.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008515, intron 7 of 22)	intron (NM_008515, intron 7 of 22)	33556.0	NM_001310732	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-148452074-2	chr5	148451974	148452174	+	808.299988	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52170.0	NM_007513	11987.0	Mm.275489	NM_007513	ENSMUSG00000041313	Slc7a1	4831426K01Rik|AI447493|Atrc-1|Atrc1|Cat1|Rec-1|Rev-1|mCAT-1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-77948836-2	chr15	77948736	77948936	+	643.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001017983, intron 5 of 8)	intron (NM_001017983, intron 5 of 8)	7886.0	NM_001168260	239554.0	Mm.295605	NM_001017983	ENSMUSG00000016552	Foxred2	A430097D04Rik|D15Bwg0759e|Gm304	FAD-dependent oxidoreductase domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-164441645-2	chr2	164441545	164441745	+	699.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011521, intron 1 of 4)	intron (NM_011521, intron 1 of 4)	1543.0	NM_011521	20971.0	Mm.3815	NM_011521	ENSMUSG00000017009	Sdc4	AA959608|AW108331|S4|Synd4|ryudocan|syndecan-4	syndecan 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-12026908-3	chr19	12026837	12027037	+	768.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9803.0	NM_146680	258675.0	Mm.271517	NM_146680	ENSMUSG00000067529	Olfr1423	MOR239-3	olfactory receptor 1423	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-128808096-2	chr4	128807996	128808196	+	753.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-1984.0	NM_001081098	230761.0	Mm.22616	NM_001081098	ENSMUSG00000028799	Zfp362	-	zinc finger protein 362	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-108401746-4	chr6	108401678	108401878	+	981.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 32 of 61)	intron (NM_010585, intron 32 of 61)	-87965.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-106717390-4	chr1	106717289	106717489	+	601.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3099.0	NM_177410	12043.0	Mm.257460	NM_009741	ENSMUSG00000057329	Bcl2	AW986256|Bcl-2|C430015F12Rik|D630044D05Rik|D830018M01Rik	B cell leukemia/lymphoma 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-137865208-4	chr3	137865104	137865304	+	999.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001316995, exon 2 of 5)	exon (NM_001316995, exon 2 of 5)	717.0	NM_016750	51788.0	Mm.117541	NM_016750	ENSMUSG00000037894	H2afz	H2A.Z|H2a.z-1	H2A histone family, member Z	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19366275-2	chr7	19366175	19366375	+	948.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001010836, intron 1 of 12)	B2_Mm2|SINE|B2	5059.0	NM_001010836	333654.0	Mm.333640	NM_001010836	ENSMUSG00000040734	Ppp1r13l	AV260376|IASPP|Nkip1|wa3	protein phosphatase 1, regulatory (inhibitor) subunit 13 like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117464575-2	chr8	117464475	117464675	+	691.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5310.0	NR_106046	102465653.0		NR_106046	ENSMUSG00000098483	Mir7078	Gm27386|mmu-mir-7078	microRNA 7078	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-32237642-1	chr4	32237542	32237742	+	551.0	f1_c57bl6.idr	Intergenic	Intergenic	-179793.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	0.878230697962697	0.368590819293351	0.359174608365153	0.351829217493055	0.511199415568004	1.29035601426653	0.361261330564733	1.16521730775061	2.0439784909704	0.262593379392916	1
Merged-chr7-4501772-4	chr7	4501680	4501880	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029834)	promoter-TSS (NM_029834)	-100.0	NM_029834	232807.0	Mm.360391	NM_029834	ENSMUSG00000019254	Ppp1r12c	2410197A17Rik|AI839747|B430101M08|Mbs85	protein phosphatase 1, regulatory (inhibitor) subunit 12C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-120820418-4	chr6	120820318	120820518	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007510, intron 1 of 8)	intron (NM_007510, intron 1 of 8)	2280.0	NM_007510	11973.0	Mm.29045	NM_007510	ENSMUSG00000019210	Atp6v1e1	2410029D23Rik|Atp6e|Atp6e2|Atp6v1e|D6Ertd385e|Vma4|p31	ATPase, H+ transporting, lysosomal V1 subunit E1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-85235059-4	chr11	85234926	85235126	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025825)	promoter-TSS (NM_025825)	94.0	NM_025825	66884.0	Mm.271997	NM_025825	ENSMUSG00000018481	Appbp2	1300003O07Rik|AI465480|PAT1	amyloid beta precursor protein (cytoplasmic tail) binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-12533114-4	chr4	12533020	12533220	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-361105.0	NM_026558	68099.0	Mm.25340	NM_026558	ENSMUSG00000028218	Fam92a	6720467C03Rik|Fam92a1	family with sequence similarity 92, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70205949-4	chr14	70205849	70206049	+	825.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271407)	promoter-TSS (NM_001271407)	73.0	NM_001271407	20410.0	Mm.5068	NM_011366	ENSMUSG00000022091	Sorbs3	SCAM-1|SH3P3|Sh3d4|vinexin-g	sorbin and SH3 domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-61138694-3	chr2	61138609	61138809	+	936.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-163558.0	NR_045335	100038493.0	Mm.388076	NR_045335	ENSMUSG00000075325	Gm13582	-	predicted gene 13582	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-56624701-2	chr18	56624601	56624801	+	790.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36353.0	NM_026099	67343.0	Mm.87057	NM_026099	ENSMUSG00000032900	Tex43	1700065I17Rik|Tseg7	testis expressed 43	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-108214931-2	chr13	108214831	108215031	+	569.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029001, intron 1 of 7)	CpG	527.0	NM_029001	74559.0	Mm.286127	NM_029001	ENSMUSG00000021696	Elovl7	9130013K24Rik|AI840082	ELOVL family member 7, elongation of long chain fatty acids (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-13871540-4	chr6	13871455	13871655	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001352887)	promoter-TSS (NM_001352887)	-14.0	NR_045995	76311.0	Mm.367129	NR_045995	ENSMUSG00000097616	1110019D14Rik	-	RIKEN cDNA 1110019D14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-26961773-4	chr11	26961688	26961888	+	978.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	176680.0	NR_002890	654472.0	Mm.347777	NR_002890		Gm12070	-	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	3.06141047100078	1.5686861499357	3.38647820363603	2.80782205561157	3.43691792902212	2.64766547259072	1.81077169843056	3.24165905973172	0.117339859851126	0.886407055164987	0.998431161219273
Merged-chr2-158596996-4	chr2	158596904	158597104	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040359, intron 2 of 2)	intron (NR_040359, intron 2 of 2)	13719.0	NR_040358	100045469.0	Mm.143404	NR_040358	ENSMUSG00000086496	Gm14204	-	predicted gene 14204	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132899328-3	chr4	132899237	132899437	+	854.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001163792, exon 8 of 8)	3' UTR (NM_001163792, exon 8 of 8)	-14879.0	NM_133887	100226.0	Mm.28237	NM_133887	ENSMUSG00000028879	Stx12	AI850350|AU041521|Stx13	syntaxin 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-6748735-2	chr17	6748635	6748835	+	695.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009510, intron 6 of 12)	intron (NM_009510, intron 6 of 12)	34045.0	NM_009510	22350.0	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-99159109-2	chr10	99159009	99159209	+	550.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027740, intron 9 of 11)	intron (NM_027740, intron 9 of 11)	50974.0	NM_015737	14426.0	Mm.314	NM_015737	ENSMUSG00000090035	Galnt4	AV011803	polypeptide N-acetylgalactosaminyltransferase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-35647646-4	chr13	35647545	35647745	+	975.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-12217.0	NM_009881	12593.0	Mm.29002	NM_009881	ENSMUSG00000059288	Cdyl	AI325931	chromodomain protein, Y chromosome-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140208579-2	chr5	140208479	140208679	+	935.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_152617, intron 10 of 16)	intron (NR_152617, intron 10 of 16)	-33661.0	NM_001359027	17120.0	Mm.27250	NM_010752	ENSMUSG00000029554	Mad1l1	AI173502|AW550425|Mad1	MAD1 mitotic arrest deficient 1-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150136888-4	chr4	150136790	150136990	+	973.2708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019741, intron 7 of 13)	intron (NM_019741, intron 7 of 13)	-12082.0	NM_001085529	435818.0	Mm.359648	NM_001085529	ENSMUSG00000062064	Slc2a7	-	solute carrier family 2 (facilitated glucose transporter), member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-45757496-1	chr17	45757396	45757596	+	925.0	f1_c57bl6.idr	intron (NR_152153, intron 2 of 4)	intron (NR_152153, intron 2 of 4)	22990.0	NR_152153	433111.0	Mm.213441	NR_152153	ENSMUSG00000097727	F630040K05Rik	-	RIKEN cDNA F630040K05 gene	ncRNA	1.08518334359739	0.821169722503226	0.796176034470414	0.606112173693334	0.879513662813783	1.13822739034997	0.801714504064406	1.35530226020517	1.14014709603255	0.432174361385779	1
Merged-chr5-125023289-2	chr5	125023189	125023389	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011424, intron 43 of 46)	intron (NM_011424, intron 43 of 46)	19814.0	NM_028443	73121.0	Mm.296138	NM_028443	ENSMUSG00000037962	Rflna	3110032G18Rik|Fam101a|cfm|cfm2	refilin A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117235224-2	chr11	117235124	117235324	+	833.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113486, intron 2 of 11)	intron (NM_001113486, intron 2 of 11)	-31022.0	NM_001113487	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-62122104-3	chr18	62121998	62122198	+	849.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME3A|LINE|L1	57883.0	NM_007420	11555.0	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-121290329-2	chr3	121290276	121290476	+	588.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1364.0	NR_155539	66789.0	Mm.269881	NM_024178	ENSMUSG00000039887	Alg14	5430428G01Rik|AI854024	asparagine-linked glycosylation 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-118902551-6	chr2	118902413	118902613	+	865.111084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045523, intron 1 of 6)	CpG	898.0	NM_001045523	228536.0	Mm.330487	NM_001045523	ENSMUSG00000040007	Bahd1	AL022997|AW541238|Gm117|mKIAA0945	bromo adjacent homology domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-90514411-4	chr3	90514325	90514525	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011309)	promoter-TSS (NM_011309)	-10.0	NM_009113	20196.0	Mm.6523	NM_009113	ENSMUSG00000042312	S100a13	-	S100 calcium binding protein A13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-118437252-2	chr14	118437152	118437352	+	844.916626	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	71374.0	NR_045624	73306.0	Mm.362328	NR_045624	ENSMUSG00000099911	1700044C05Rik	-	RIKEN cDNA 1700044C05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45589326-4	chr7	45589209	45589409	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009737, exon 11 of 11)	exon (NM_009737, exon 11 of 11)	-14133.0	NR_038165	71661.0	Mm.439894	NR_038165	ENSMUSG00000109644	0610005C13Rik	AI182092	RIKEN cDNA 0610005C13 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-38225004-3	chr16	38224922	38225122	+	873.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347232, intron 10 of 11)	MTE2a|LTR|ERVL-MaLR	69802.0	NM_010936	18171.0	Mm.8509	NM_010936	ENSMUSG00000022809	Nr1i2	PXR|PXR.1|PXR.2|PXR1|SXR|mPXR	nuclear receptor subfamily 1, group I, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-84040682-4	chr3	84040604	84040804	+	887.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172681)	promoter-TSS (NM_172681)	-543.0	NM_172681	229473.0	Mm.28838	NM_172681	ENSMUSG00000033767	Tmem131l	D930015E06Rik|Kiaa0922|mKIAA0922	transmembrane 131 like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-59183976-2	chr16	59183856	59184056	+	680.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4A|LINE|L1	2525.0	NM_146484	258477.0	Mm.377523	NM_146484	ENSMUSG00000109020	Olfr197	MOR183-3	olfactory receptor 197	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-96179253-2	chr5	96179153	96179353	+	952.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	-17263.0	NM_144910	231464.0	Mm.28374	NM_144910	ENSMUSG00000034724	Cnot6l	4932442K20Rik	CCR4-NOT transcription complex, subunit 6-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88754468-3	chr3	88754384	88754584	+	903.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018804, intron 2 of 3)	B3A|SINE|B2	18115.0	NM_018804	229521.0	Mm.379376	NM_018804	ENSMUSG00000068923	Syt11	1500004A13Rik|3632445O20Rik|5430404N14Rik|6530420C11Rik|AI851970	synaptotagmin XI	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-109862643-4	chr8	109862507	109862707	+	746.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009677, exon 24 of 24)	3' UTR (NM_009677, exon 24 of 24)	-5996.0	NM_001122594	244650.0	Mm.23494	NM_001122594	ENSMUSG00000031732	Phlpp2	AI481772|C130044A18Rik|Phlppl	PH domain and leucine rich repeat protein phosphatase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-12024351-4	chr19	12024240	12024440	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12400.0	NM_146680	258675.0	Mm.271517	NM_146680	ENSMUSG00000067529	Olfr1423	MOR239-3	olfactory receptor 1423	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-41006927-4	chr8	41006804	41007004	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005863, intron 7 of 13)	intron (NM_001005863, intron 7 of 13)	-10564.0	NR_015457	78849.0	Mm.440930	NR_015457	ENSMUSG00000084960	B430010I23Rik	-	RIKEN cDNA B430010I23 gene	ncRNA	5.34857805269412	5.98217742118434	5.42753563178464	4.87621931140028	5.76247823802337	6.39331874034738	5.73714704761517	5.43370244643376	0.466653513281583	0.127728626026622	0.559030175729842
Merged-chr2-30067256-4	chr2	30067167	30067367	+	878.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001204875, intron 1 of 7)	CpG	793.0	NM_001204875	56086.0	Mm.326055	NM_023871	ENSMUSG00000054766	Set	2610030F17Rik|5730420M11Rik|AA407739|I-2PP2A|StF-IT-1|TAF-I	SET nuclear oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-48297260-2	chr7	48297160	48297360	+	787.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2B2|LINE|L1	-91266.0	NM_207539	404240.0	Mm.357942	NM_207539	ENSMUSG00000050870	Mrgprb8	MrgB8	MAS-related GPR, member B8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-78200871-2	chr16	78200771	78200971	+	794.400024	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54583.0	NR_045698	100503619.0	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-54898355-1	chr14	54898255	54898455	+	544.0	f1_balb.idr	3' UTR (NM_019402, exon 7 of 7)	3' UTR (NM_019402, exon 7 of 7)	4212.0	NM_019402	54196.0	Mm.7723	NM_019402	ENSMUSG00000022194	Pabpn1	PAB2|Pabp3|mPABII	poly(A) binding protein, nuclear 1	protein-coding	0.274019659842821	-0.0527100639845464	0.103116699619651	-0.0601140741091334	-0.0646272431998582	0.127009007125268	0.366354038003863	0.219377880960889	0.850309998262188	0.681067560985279	1
Merged-chr1-171120785-2	chr1	171120685	171120885	+	758.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081275)	promoter-TSS (NM_001081275)	-876.0	NM_001081275	75472.0	Mm.32760	NM_029301	ENSMUSG00000026649	Cfap126	1700009P17Rik|AV282292|Flattop|Fltp	cilia and flagella associated protein 126	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-28540790-1	chr10	28540690	28540890	+	980.0	f0_balb.idr	intron (NM_001359356, intron 13 of 30)	intron (NM_001359356, intron 13 of 30)	-127570.0	NM_001305663	210757.0	Mm.123021	NM_178666	ENSMUSG00000049109	Themis	E430004N04Rik|Gasp|Spot|Tsepa|thylex	thymocyte selection associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-134987722-4	chr1	134987609	134987809	+	898.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001033409, exon 18 of 18)	exon (NM_001033409, exon 18 of 18)	25144.0	NM_001278115	67196.0	Mm.284587	NM_026024	ENSMUSG00000026429	Ube2t	2700084L22Rik|C80607	ubiquitin-conjugating enzyme E2T	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101896314-4	chr7	101896238	101896438	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027532)	promoter-TSS (NM_027532)	7.0	NM_001291349	75430.0	Mm.284491	NM_027532	ENSMUSG00000030649	Anapc15	3200002M19Rik|6330414C15Rik|APC15	anaphase prompoting complex C subunit 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-150592695-4	chr5	150592566	150592766	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133898, intron 1 of 4)	intron (NM_133898, intron 1 of 4)	1859.0	NM_133898	100637.0	Mm.279932	NM_133898	ENSMUSG00000041132	N4bp2l1	2410024N18Rik|AI428195|B230342M21Rik	NEDD4 binding protein 2-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-22230715-4	chr9	22230595	22230795	+	853.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028420, intron 1 of 4)	intron (NR_028420, intron 1 of 4)	4983.0	NM_001164624	235047.0	Mm.290849	NM_172763	ENSMUSG00000057982	Zfp809	BB114266|C330026E23	zinc finger protein 809	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-110788286-2	chr10	110788186	110788386	+	853.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_178609)	TTS (NM_178609)	42847.0	NM_178609	52679.0	Mm.11747	NM_178609	ENSMUSG00000020185	E2f7	A630014C11Rik|D10Ertd739e|E2F-7	E2F transcription factor 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150076429-4	chr4	150076290	150076490	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB4|LINE|L1	7936.0	NR_029751	723848.0		NR_029751	ENSMUSG00000065493	Mir34a	Mirn34a|mir-34a|mmu-mir-34a	microRNA 34a	ncRNA	4.60518050035297	4.67112509969141	4.05444543572036	5.05230735879499	4.70805930796417	4.07208467618756	4.74385031204775	4.0941275638552	-0.246577336209807	0.537817171646547	0.953963493057627
Merged-chr9-110531392-2	chr9	110531292	110531492	+	686.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-1205.0	NM_001081340	235626.0	Mm.288949	NM_001081340	ENSMUSG00000044791	Setd2	4921524K10Rik|BC031601|KMT3A	SET domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-106339621-2	chr9	106339570	106339770	+	611.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027354, intron 10 of 10)	B1_Mm|SINE|Alu	-28962.0	NM_153459	235584.0	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	0.24833987801661	0.52066574755498	0.271083466514103	0.262646661426268	0.594011130015257	1.54750580218886	0.973966702095174	0.264130047842524	3.81412798911754	0.0375027163249163	0.275484239061028
Merged-chr1-195176741-2	chr1	195176641	195176841	+	849.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007758)	promoter-TSS (NM_007758)	-26.0	NM_007758	12902.0	Mm.235387	NM_007758	ENSMUSG00000026616	Cr2	C3DR|CD21|CD35|Cr-1|Cr-2|Cr1	complement receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-88634498-2	chr5	88634398	88634598	+	960.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359208, intron 10 of 13)	intron (NM_001359208, intron 10 of 13)	41082.0	NM_001098476	231413.0	Mm.332474	NM_178700	ENSMUSG00000044221	Grsf1	BB232551|C80280|D5Wsu31e	G-rich RNA sequence binding factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-81264854-1	chr3	81264754	81264954	+	645.0	f0_balb.idr	Intergenic	L1_Rod|LINE|L1	228438.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	1.18838260113697	1.52937640067903	1.03116027374381	1.01194932034804	1.97519927303253	2.13270771614578	2.42284780716741	2.08578983022321	3.35007151557249	0.00593132645600633	0.0760841640974668
Merged-chr13-56184496-4	chr13	56184422	56184622	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5637.0	NM_001168615	212937.0	Mm.116697	NM_145976	ENSMUSG00000049625	Tifab	-	TRAF-interacting protein with forkhead-associated domain, family member B	protein-coding	4.21191473513703	4.15860704568811	4.52882732960095	2.9577362536208	3.86823658028294	3.90702716318328	3.31997980508318	3.80814343224615	-0.466745395593948	0.360377185874844	0.856460911964629
Merged-chr10-118870402-4	chr10	118870272	118870472	+	942.724976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1469.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-72254788-4	chr1	72254634	72254834	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155355, intron 1 of 3)	intron (NR_155355, intron 1 of 3)	10741.0	NR_155355	320933.0	Mm.440953	NR_155355		D230017M19Rik	B930094L07Rik	RIKEN cDNA D230017M19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-54966515-2	chr11	54966415	54966615	+	631.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3575.0	NM_001271455	57783.0	Mm.259671	NM_021327	ENSMUSG00000020400	Tnip1	ABIN|ABIN-1|ABIN1|AU018810|Naf1|Nef|VAN	TNFAIP3 interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-117254124-4	chr4	117254027	117254227	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029589, intron 2 of 3)	intron (NM_029589, intron 2 of 3)	1787.0	NM_029589	68777.0	Mm.331805	NM_026837	ENSMUSG00000048772	Tmem53	1110038M16Rik|1500001P22Rik|1700012A05Rik	transmembrane protein 53	protein-coding	1.58768736423632	2.31963138133709	1.22512706747905	2.5042990600434	1.39569592341369	2.33832260759278	2.38267755731982	3.46148052383276	1.24838068257249	0.206717917983465	0.694734336124823
Merged-chr13-55600828-4	chr13	55600728	55600928	+	878.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146045, intron 1 of 5)	intron (NM_146045, intron 1 of 5)	932.0	NM_001311137	218271.0	Mm.139825	NM_146045	ENSMUSG00000021504	B4galt7	-	xylosylprotein beta1,4-galactosyltransferase, polypeptide 7 (galactosyltransferase I)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-120056551-2	chr1	120056451	120056651	+	801.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001012322, intron 12 of 13)	intron (NM_001012322, intron 12 of 13)	17229.0	NM_019432	170706.0	Mm.24750	NM_019432	ENSMUSG00000050777	Tmem37	AI173373|AW540203|Pr|Pr1	transmembrane protein 37	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135780628-4	chr5	135780546	135780746	+	751.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008617, intron 1 of 8)	intron (NM_008617, intron 1 of 8)	1997.0	NM_008617	17448.0	Mm.297096	NM_008617	ENSMUSG00000019179	Mdh2	MDH|Mdh-2|Mor-1|Mor1	malate dehydrogenase 2, NAD (mitochondrial)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-86818889-2	chr11	86818789	86818989	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28B|LTR|ERVL	-11229.0	NM_026191	67487.0	Mm.260627	NM_026191	ENSMUSG00000018425	Dhx40	2410016C14Rik|ARG147|DDX40|PAD	DEAH (Asp-Glu-Ala-His) box polypeptide 40	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-91094384-2	chr13	91094284	91094484	+	575.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025770, intron 3 of 7)	intron (NM_025770, intron 3 of 7)	129603.0	NM_025770	66795.0	Mm.235385	NM_025770	ENSMUSG00000021619	Atg10	5330424L23Rik|5430428K15Rik|AI852123|APG10|Agp10|Apg10l|Apg10p|Atg10l	autophagy related 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135613888-2	chr5	135613786	135613986	+	691.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-18768.0	NM_001357037	215160.0	Mm.295438	NM_031398	ENSMUSG00000039917	Rhbdd2	0610011L13Rik|AI480532|Rhbdl7|Usmg1	rhomboid domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55644327-2	chr19	55644227	55644427	+	594.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_045318, intron 2 of 3)	intron (NR_045318, intron 2 of 3)	57877.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141716586-2	chr4	141716486	141716686	+	612.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001017966, intron 1 of 9)	intron (NM_001017966, intron 1 of 9)	6833.0	NM_001017966	68817.0	Mm.393721	NM_001017966	ENSMUSG00000078515	Ddi2	1110056G13Rik|1700027M01Rik|9130022E05Rik|AI604911|AU040698	DNA-damage inducible protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-121995572-4	chr10	121995492	121995692	+	998.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081037, intron 1 of 21)	intron (NM_001081037, intron 1 of 21)	51723.0	NM_001242411	117600.0	Mm.288698	NM_001081037	ENSMUSG00000020121	Srgap1	4930572H05Rik|Arhgap13	SLIT-ROBO Rho GTPase activating protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-80334297-4	chr12	80334246	80334446	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57331.0	NR_037207	100526530.0		NR_037207	ENSMUSG00000105972	Mir1843a	Mir1843|mir-1843a|mmu-mir-1843|mmu-mir-1843a	microRNA 1843a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-76902176-4	chr8	76902061	76902261	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001083906)	promoter-TSS (NM_001083906)	-347.0	NM_001083906	110784.0	Mm.324393	NM_001083906	ENSMUSG00000031618	Nr3c2	MR|Mlr	nuclear receptor subfamily 3, group C, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117682716-4	chr10	117682611	117682811	+	940.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027468, intron 8 of 8)	B3|SINE|B2	28047.0	NM_010786	17246.0	Mm.22670	NM_010786	ENSMUSG00000020184	Mdm2	1700007J15Rik|AA415488|Mdm-2	transformed mouse 3T3 cell double minute 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16177525-1	chr7	16177425	16177625	+	714.0	f1_c57bl6.idr	exon (NM_001302472, exon 2 of 13)	exon (NM_001302472, exon 2 of 13)	2130.0	NR_102730	17537.0	Mm.360516	NM_008627	ENSMUSG00000041420	Meis3	AI573393|Mrg2	Meis homeobox 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-174471952-2	chr2	174471852	174472052	+	754.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_025531, intron 1 of 5)	intron (NM_025531, intron 1 of 5)	989.0	NM_025531	66390.0	Mm.182294	NM_025531	ENSMUSG00000016257	Prelid3b	2310042G06Rik|AA407013|Slmo2	PRELI domain containing 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-11462982-2	chr16	11462882	11463082	+	664.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_028964, intron 13 of 20)	intron (NM_028964, intron 13 of 20)	57334.0	NM_001290148	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-45255919-2	chr9	45255819	45256019	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008348, exon 7 of 7)	exon (NM_008348, exon 7 of 7)	10788.0	NR_106054	102466803.0		NR_106054	ENSMUSG00000098361	Mir7086	Gm27643|mmu-mir-7086	microRNA 7086	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-114383259-1	chr6	114383159	114383359	+	576.0	f0_balb.idr	Intergenic	Intergenic	-14677.0	NM_001317125	15465.0	Mm.333327	NM_008285	ENSMUSG00000053004	Hrh1	Bphs|H1R|HH1R|Hir	histamine receptor H1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-48700405-4	chr6	48700289	48700489	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7855.0	NM_153175	231931.0	Mm.321047	NM_153175	ENSMUSG00000047867	Gimap6	4833419H03Rik|Ian6|mFLJ00102	GTPase, IMAP family member 6	protein-coding	1.83456420558402	2.29019933894959	2.20453631635497	0.989353494465256	2.0333105772156	1.69324022198245	1.01318793880009	0.992645557685184	-1.12642884345866	0.369167033640491	0.863136285888838
Merged-chr7-88290746-2	chr7	88290639	88290839	+	588.5	f0_c57.idr|f1_c57bl6.idr	3' UTR (NM_001311790, exon 4 of 4)	3' UTR (NM_001311790, exon 4 of 4)	12654.0	NM_001311790	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117399330-2	chr8	117399230	117399430	+	697.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028941, intron 3 of 20)	intron (NM_028941, intron 3 of 20)	50160.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6818027-2	chr19	6817927	6818127	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19A|LTR|ERVK	11917.0	NR_039555	100628576.0		NR_039555	ENSMUSG00000104884	Mir5046	mmu-mir-5046|mu-mir-5046	microRNA 5046	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-61487873-4	chr8	61487772	61487972	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_145595, exon 1 of 5)	exon (NM_145595, exon 1 of 5)	138.0	NM_145595	234309.0	Mm.29059	NM_145595	ENSMUSG00000031641	Cbr4	A730083J17Rik|BC009118	carbonyl reductase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-47137934-3	chr19	47137829	47138029	+	902.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_133746, exon 1 of 3)	5' UTR (NM_133746, exon 1 of 3)	365.0	NM_133746	72691.0	Mm.31663	NM_133746	ENSMUSG00000033033	Calhm2	2810048G17Rik|Fam26b	calcium homeostasis modulator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-142462181-2	chr5	142462081	142462281	+	586.75	f1_balb.idr|f1_c57bl6.idr	TTS (NM_199068)	TTS (NM_199068)	-1750.0	NM_172725	231855.0	Mm.78250	NM_172725	ENSMUSG00000039623	Ap5z1	C330006K01Rik	adaptor-related protein complex 5, zeta 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-116504938-4	chr8	116504848	116505048	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029297)	promoter-TSS (NM_029297)	-67.0	NM_029297	75465.0	Mm.23114	NM_029297	ENSMUSG00000034467	Dynlrb2	1700009A04Rik|DNLC2B|Dncl2b	dynein light chain roadblock-type 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-21222500-2	chr13	21222412	21222612	+	938.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42581.0	NM_009054	19720.0	Mm.314056	NM_009054	ENSMUSG00000021326	Trim27	AW538890|Gm19403|Rfp	tripartite motif-containing 27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-103282533-1	chr2	103282433	103282633	+	554.0	f0_balb.idr	intron (NM_007914, intron 2 of 8)	intron (NM_007914, intron 2 of 8)	20663.0	NM_007914	13661.0	Mm.10724	NM_007914	ENSMUSG00000012350	Ehf	9030625L19Rik|AU019492	ets homologous factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-62342047-2	chr9	62341947	62342147	+	928.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_009672, intron 1 of 6)	CpG	704.0	NM_009672	11737.0	Mm.269088	NM_009672	ENSMUSG00000032249	Anp32a	Anp32|I1PP2A|LANP|PHAP1|W91701|pp32	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-119437632-2	chr8	119437532	119437732	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027950, intron 1 of 5)	intron (NM_027950, intron 1 of 5)	470.0	NM_027950	71839.0	Mm.272357	NM_027950	ENSMUSG00000074063	Osgin1	1700012B18Rik|Okl38	oxidative stress induced growth inhibitor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91075063-2	chr2	91074963	91075163	+	855.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4748.0	NM_001290765	68427.0	Mm.192375	NM_026721	ENSMUSG00000002105	Slc39a13	1100001L14Rik|AA387663|ZIP-13|ZIP13	solute carrier family 39 (metal ion transporter), member 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-103335593-3	chr3	103335479	103335679	+	820.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001079830, intron 11 of 18)	intron (NM_001079830, intron 11 of 18)	56286.0	NM_053170	94093.0	Mm.195036	NM_053170	ENSMUSG00000033014	Trim33	8030451N04Rik|AI413936|Ecto|Tif1g	tripartite motif-containing 33	protein-coding	1.54206764092965	2.3598490134578	2.51656203938454	1.27145090074359	1.9137486253942	1.08711779629825	1.06191666995523	2.02009217057608	-1.13523118154851	0.328233001361483	0.830597486712967
Merged-chr16-22100272-2	chr16	22100172	22100372	+	630.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183029, intron 2 of 15)	MTE2b-int|LTR|ERVL-MaLR	63027.0	NM_183029	319765.0	Mm.489442	NM_183029	ENSMUSG00000033581	Igf2bp2	C330012H03Rik|IMP-2|Imp2|Neilsen	insulin-like growth factor 2 mRNA binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-82291579-4	chr1	82291500	82291700	+	954.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010570)	promoter-TSS (NM_010570)	-161.0	NM_010570	16367.0	Mm.4952	NM_010570	ENSMUSG00000055980	Irs1	G972R|IRS-1	insulin receptor substrate 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25209597-2	chr7	25209498	25209698	+	770.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_207677, intron 4 of 4)	intron (NM_207677, intron 4 of 4)	8127.0	NR_106015	102466794.0		NR_106015	ENSMUSG00000098325	Mir7048	Gm27274|mmu-mir-7048	microRNA 7048	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-13966686-1	chr14	13966586	13966786	+	556.0	f0_balb.idr	Intergenic	Intergenic	-4834.0	NM_001359901	66231.0	Mm.295875	NM_025435	ENSMUSG00000053453	Thoc7	Nif3l1bp1	THO complex 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-52103859-4	chr3	52103751	52103951	+	849.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001004176, exon 1 of 5)	exon (NM_001004176, exon 1 of 5)	1155.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-98608919-2	chr15	98608819	98609019	+	691.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1286.0	NM_007405	11512.0	Mm.157091	NM_007405	ENSMUSG00000022994	Adcy6	AC6|mKIAA0422	adenylate cyclase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-40710036-1	chr19	40709936	40710136	+	565.0	f1_balb.idr	intron (NM_009848, intron 1 of 9)	intron (NM_009848, intron 1 of 9)	50266.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	1.27060184304785	0.978941682356692	1.99603915095085	1.33541551220264	1.65231089906274	0.98313641040383	2.18718847304837	1.62648655242788	0.711701884386282	0.563194217637244	0.960367595640396
Merged-chr11-32601562-2	chr11	32601426	32601626	+	580.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 10 of 18)	intron (NM_009288, intron 10 of 18)	-41029.0	NM_001271348	103583.0	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	-0.553375634413499	-0.539247260536397	-0.54384914002202	-0.547417308205224	-0.251767830577683	-0.538213451310665	0.384778767505172	-0.546792832639358	3.66647229425604	0.165386110588009	1
Merged-chr1-184444356-4	chr1	184444224	184444424	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	113367.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-35872207-3	chr16	35872103	35872303	+	874.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039530)	promoter-TSS (NM_001039530)	-821.0	NM_001039530	547253.0	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-91752241-2	chr12	91752141	91752341	+	562.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 1 of 6)	MTEb|LTR|ERVL-MaLR	34195.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-23250180-2	chr19	23250080	23250280	+	611.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252684, intron 8 of 24)	L1MD|LINE|L1	22419.0	NM_001252685	226026.0	Mm.23267	NM_153808	ENSMUSG00000024943	Smc5	MLZ-453|SMC-5|Smc5l1|mKIAA0594|mSMC5	structural maintenance of chromosomes 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64288398-2	chr5	64288298	64288498	+	719.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 11 of 18)	intron (NM_001289514, intron 11 of 18)	58041.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	0.141818498400034	-0.304495060392041	-0.308615860444819	-0.311788116645305	-0.316260506263994	-0.303564743083074	-0.131835197127144	0.308731527454938	0.858987360305657	0.730045930309784	1
Merged-chr11-3171468-2	chr11	3171365	3171565	+	953.333374	f0_balb.idr|f1_balb.idr	intron (NM_030207, intron 6 of 32)	B1_Mur1|SINE|Alu	21998.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-137645311-3	chr5	137645202	137645402	+	930.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010571, exon 1 of 2)	exon (NM_010571, exon 1 of 2)	412.0	NM_010571	16369.0	Mm.24486	NM_010571	ENSMUSG00000047182	Irs3	AA408304	insulin receptor substrate 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117111716-3	chr10	117111606	117111806	+	701.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177798, intron 1 of 9)	MLT1N2|LTR|ERVL-MaLR	36768.0	NM_177798	327826.0	Mm.135965	NM_177798	ENSMUSG00000020170	Frs2	4732458E18|C330018A15Rik|Frs2alpha|SNT1	fibroblast growth factor receptor substrate 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69124644-4	chr11	69124569	69124769	+	812.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	tRNA-Gln-CAG|tRNA|tRNA	-1708.0	NM_011786	23801.0	Mm.41989	NM_011786	ENSMUSG00000020892	Aloxe3	e-LOX-3|eLOX-3	arachidonate lipoxygenase 3	protein-coding	1.60212255939651	1.38611913785983	1.66833169626453	1.00768757249192	1.11674382408963	1.06543817211646	0.835743358820986	1.30411228587745	-1.48758734916341	0.251980325957609	0.749776101430909
Merged-chr16-15335317-2	chr16	15335217	15335417	+	687.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR25A|LTR|ERVK	259201.0	NM_001159351	70620.0	Mm.235407	NM_023585	ENSMUSG00000022674	Ube2v2	1110021H13Rik|4632410D19Rik|5730524P06Rik|6820402M05|AI848315|C81524|MMS2	ubiquitin-conjugating enzyme E2 variant 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-109365053-4	chr11	109364967	109365167	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359034, intron 1 of 2)	intron (NM_001359034, intron 1 of 2)	-1413.0	NR_038097	100036768.0	Mm.467767	NR_038097	ENSMUSG00000056687	Gm11696	-	predicted gene 11696	ncRNA	4.50370855784013	3.97175255430472	2.63657251905151	3.94218663301638	4.34289960569307	4.29054112422115	4.90873571192098	4.97389772752965	0.957837304558341	0.0438761019707944	0.300814555111767
Merged-chr19-29361881-4	chr19	29361782	29361982	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026362)	promoter-TSS (NM_026362)	-11.0	NM_026362	67759.0	Mm.275511	NM_026362	ENSMUSG00000016495	Plgrkt	1110007H22Rik|5033414D02Rik|AI852040|Plg-R(KT)|Plg-RKT	plasminogen receptor, C-terminal lysine transmembrane protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-13981472-4	chr14	13981362	13981562	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19610.0	NM_001359901	66231.0	Mm.295875	NM_025435	ENSMUSG00000053453	Thoc7	Nif3l1bp1	THO complex 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-102791857-3	chr2	102791774	102791974	+	623.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45114.0	NR_153853	102637542.0	Mm.371582	NR_153852		Gm13872	-	predicted gene 13872	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-31078590-4	chr6	31078485	31078685	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15492.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80946912-2	chr10	80946812	80947012	+	591.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	16821.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5806120-4	chr19	5806024	5806224	+	955.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3452.0	NR_002847	72289.0	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-37328913-2	chr15	37328813	37329013	+	684.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_026496, intron 9 of 15)	intron (NM_026496, intron 9 of 15)	-95754.0	NR_155442	105245924.0	Mm.391911	NR_155441	ENSMUSG00000089804	Gm16136	-	predicted gene 16136	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133968074-4	chr4	133967983	133968183	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016957)	promoter-TSS (NM_016957)	-92.0	NM_016957	15331.0	Mm.319660	NM_016957	ENSMUSG00000003038	Hmgn2	HMG-17|Hmg17	high mobility group nucleosomal binding domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65666310-3	chr9	65666216	65666416	+	713.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-10232.0	NM_010952	18247.0	Mm.116749	NM_010952	ENSMUSG00000040652	Oaz2	AZ-2|AZ2|Oaz2-ps|Sez15	ornithine decarboxylase antizyme 2	protein-coding	1.3483932328492	1.35758441245646	1.91009402033149	0.909798478334588	1.98173492842974	1.3674111238537	1.14367838808991	1.28437452841382	0.200968634860978	0.870475999959296	0.998431161219273
Merged-chr11-120185958-2	chr11	120185858	120186058	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_030682)	TTS (NR_030682)	3898.0	NR_030682	100042332.0	Mm.269766	NR_030682		2810410L24Rik	-	RIKEN cDNA 2810410L24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-92250680-3	chr2	92250590	92250790	+	749.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109690, intron 3 of 15)	intron (NM_001109690, intron 3 of 15)	29128.0	NM_001109690	192285.0	Mm.330408	NM_138755	ENSMUSG00000058318	Phf21a	80kDa|Bhc|Bhc80|D030065N23Rik|PFTF1	PHD finger protein 21A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-93635818-4	chr1	93635717	93635917	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021537)	promoter-TSS (NM_021537)	-90.0	NM_021537	59041.0	Mm.28761	NM_021537	ENSMUSG00000026277	Stk25	1500019J11Rik|AU018434|C86992|Ste20-like|Ysk1	serine/threonine kinase 25 (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-47918696-4	chr19	47918589	47918789	+	983.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001738, intron 1 of 1)	intron (NM_001001738, intron 1 of 1)	610.0	NM_001001738	414801.0	Mm.29457	NM_001001738	ENSMUSG00000044948	Itprip	4833424O12Rik|DANGER	inositol 1,4,5-triphosphate receptor interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-79809136-2	chr9	79809036	79809236	+	561.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15495.0	NR_040734	74633.0	Mm.262175	NR_040734	ENSMUSG00000086918	4930429F24Rik	-	RIKEN cDNA 4930429F24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-20674693-3	chr5	20674599	20674799	+	681.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170746, intron 22 of 22)	intron (NM_001170746, intron 22 of 22)	207425.0	NM_172992	68770.0	Mm.86410	NM_172992	ENSMUSG00000039987	Phtf2	1110054G21Rik|9530062N20Rik|AI447096|C77923	putative homeodomain transcription factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-13493604-3	chr8	13493445	13493645	+	886.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019521, intron 2 of 14)	intron (NM_019521, intron 2 of 14)	990.0	NM_019521	14456.0	Mm.3982	NM_019521	ENSMUSG00000031451	Gas6	Gas-6	growth arrest specific 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-40431251-3	chr12	40431148	40431348	+	920.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172575, intron 1 of 12)	intron (NM_172575, intron 1 of 12)	14542.0	NM_172575	246196.0	Mm.26852	NM_172575	ENSMUSG00000055917	Zfp277	2410017E24Rik|NIRF4	zinc finger protein 277	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-24173849-3	chr10	24173757	24173957	+	694.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016797, intron 2 of 9)	intron (NM_016797, intron 2 of 9)	24540.0	NM_016797	53331.0	Mm.248042	NM_016797	ENSMUSG00000019998	Stx7	AI315064|AI317144|AW107239|Syn7	syntaxin 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85284425-4	chr12	85284327	85284527	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3992.0	NM_025421	66204.0	Mm.311985	NM_025421	ENSMUSG00000008822	Acyp1	1110039O14Rik|AI325944	acylphosphatase 1, erythrocyte (common) type	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52634225-2	chr13	52634125	52634325	+	546.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011518, intron 9 of 13)	B4|SINE|B4	37343.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-70705139-1	chr17	70705039	70705239	+	558.0	f0_balb.idr	intron (NM_001360665, intron 9 of 14)	intron (NM_001360665, intron 9 of 14)	141638.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-87353549-2	chr16	87353449	87353649	+	942.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159331)	promoter-TSS (NM_001159331)	-636.0	NM_001159331	67768.0	Mm.296532	NM_026366	ENSMUSG00000044442	N6amt1	5830445C04Rik|Hemk2|Pred28	N-6 adenine-specific DNA methyltransferase 1 (putative)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-70787896-2	chr6	70787796	70787996	+	915.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009075, intron 1 of 8)	intron (NM_009075, intron 1 of 8)	4279.0	NM_009075	19895.0	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-101160482-2	chr4	101160382	101160582	+	869.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_146145, intron 16 of 24)	intron (NM_146145, intron 16 of 24)	91444.0	NM_183024	242570.0	Mm.185636	NM_183024	ENSMUSG00000035275	Raver2	A430091O22Rik	ribonucleoprotein, PTB-binding 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26640441-4	chr17	26640360	26640560	+	825.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026170, intron 8 of 9)	intron (NM_026170, intron 8 of 9)	-35936.0	NM_025272	11974.0	Mm.22602	NM_025272	ENSMUSG00000015575	Atp6v0e	Atp6k|Atp6v0e1|M9.2	ATPase, H+ transporting, lysosomal V0 subunit E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-45911137-3	chr9	45911068	45911268	+	715.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001281934, exon 5 of 17)	exon (NM_001281934, exon 5 of 17)	-4257.0	NM_001361112	235315.0	Mm.220945	NM_178709	ENSMUSG00000042790	Rnf214	D130054N24Rik	ring finger protein 214	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99653622-2	chr15	99653522	99653722	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1966.0	NM_001253809	26934.0	Mm.273804	NM_012025	ENSMUSG00000023015	Racgap1	AI227039|AI327394|Band25|GTPase|MgcRacGAP|gtl11|mKIAA1478	Rac GTPase-activating protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-40244721-4	chr10	40244621	40244821	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023323, intron 1 of 9)	intron (NM_023323, intron 1 of 9)	2258.0	NM_001042556	67239.0	Mm.11480	NM_023323	ENSMUSG00000038510	Rpf2	2810470K21Rik|AU040229|AU043242|Bxdc1	ribosome production factor 2 homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-29853313-2	chr6	29853213	29853413	+	814.349976	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347084)	promoter-TSS (NM_001347084)	-428.0	NM_001347084	74340.0	Mm.210899	NM_021414	ENSMUSG00000029772	Ahcyl2	4631427C17Rik|AI227036|Adohcyase3|mKIAA0828	S-adenosylhomocysteine hydrolase-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-34886976-2	chr6	34886876	34887076	+	578.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013366, intron 11 of 14)	intron (NM_001013366, intron 11 of 14)	-8911.0	NM_001135611	78412.0	Mm.248440	NM_199145	ENSMUSG00000046806	3110062M04Rik	AL023049|Cyren|Mri	RIKEN cDNA 3110062M04 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-9049458-2	chr9	9049358	9049558	+	883.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_027823, intron 5 of 22)	4.5SRNA|scRNA|scRNA	149625.0	NM_008829	18667.0	Mm.12798	NM_008829	ENSMUSG00000031870	Pgr	9930019P03Rik|BB114106|NR3C3|PR|PR-A|PR-B	progesterone receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-96447736-2	chr9	96447636	96447836	+	607.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30939.0	NM_011279	19823.0	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-102005682-2	chr5	102005582	102005782	+	724.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 3 of 66)	intron (NM_172882, intron 3 of 66)	64239.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-79927531-2	chr7	79927431	79927631	+	647.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027420, intron 5 of 5)	intron (NM_027420, intron 5 of 5)	-6891.0	NM_009682	11778.0	Mm.220173	NM_009682	ENSMUSG00000063801	Ap3s2	[s]3B	adaptor-related protein complex 3, sigma 2 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118612889-2	chr9	118612789	118612989	+	993.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 1 of 27)	B4|SINE|B4	6180.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-144554987-2	chr7	144554887	144555087	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1258.0	NM_001195086	233977.0	Mm.490347	NM_001033319	ENSMUSG00000037519	Ppfia1	C030014K08Rik|C87158|LIP.1|LIP1	protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-87602376-4	chr17	87602249	87602449	+	962.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33630.0	NM_008532	17075.0	Mm.4259	NM_008532	ENSMUSG00000045394	Epcam	CD326|EGP|EGP-2|Egp314|Ep-CAM|EpCAM1|GA733-2|Ly74|TROP1|Tacsd1|Tacstd1|gp40	epithelial cell adhesion molecule	protein-coding	4.52790842943709	4.11815142351523	3.98285441882267	4.90480606316387	4.52607458810491	3.73316104244435	3.6051408557279	3.95938254411715	-0.557109998835116	0.216208714799989	0.706831651272553
Merged-chr17-36997287-1	chr17	36997187	36997387	+	606.0	f0_balb.idr	Intergenic	Intergenic	-3876.0	NM_001168502	22715.0	Mm.305561	NM_009559	ENSMUSG00000036036	Zfp57	G19|Zfp-57	zinc finger protein 57	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-61453579-2	chr10	61453479	61453679	+	800.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010124)	promoter-TSS (NM_010124)	-910.0	NM_010124	13688.0	Mm.259516	NM_010124	ENSMUSG00000020091	Eif4ebp2	2810011I19Rik|4E-BP2|AA792569|BC010348|PHAS-II	eukaryotic translation initiation factor 4E binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-152555287-4	chr3	152555188	152555388	+	974.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355635, intron 6 of 8)	intron (NM_001355635, intron 6 of 8)	-111625.0	NR_040386	99542.0	Mm.394921	NR_040386	ENSMUSG00000097745	AI115009	-	expressed sequence AI115009	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-134458871-4	chr5	134458778	134458978	+	964.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2162.0	NM_001081464	57080.0	Mm.332735	NM_020331	ENSMUSG00000023079	Gtf2ird1	1700012P16Rik|BEN|Cream1|ESTM9|GTF3|Gtf2il|MusTRD1|Tg(Alb1-Myc)166.8Sst|WBSCR11|X83320	general transcription factor II I repeat domain-containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-172346210-4	chr2	172346105	172346305	+	883.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025912, intron 1 of 2)	intron (NM_025912, intron 1 of 2)	628.0	NM_025912	67017.0	Mm.30013	NM_025912	ENSMUSG00000027495	Fam210b	2010011I20Rik|AI430961|AV108736	family with sequence similarity 210, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-90107141-4	chr9	90107038	90107238	+	962.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039147, intron 3 of 12)	intron (NM_001039147, intron 3 of 12)	7682.0	NM_001039147	21761.0	Mm.426209	NM_024431	ENSMUSG00000062270	Morf4l1	MORFRG15|MRG15|TEG-189|Tex189|mKIAA4002	mortality factor 4 like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-100402856-2	chr6	100402756	100402956	+	659.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-115498.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-68706678-4	chr11	68706586	68706786	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175260, intron 2 of 40)	Charlie1a|DNA|hAT-Charlie	14771.0	NM_175260	77579.0	Mm.218233	NM_175260	ENSMUSG00000020900	Myh10	5730504C04Rik|9330167F11Rik|Fltn|Myhn-2|Myhn2|NMHC II-B|NMHC-B|NMHCII-B|NMMHC II-b|NMMHC-B|NMMHC-IIB|SMemb|mKIAA3005	myosin, heavy polypeptide 10, non-muscle	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-13299386-4	chr9	13299283	13299483	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52427.0	NM_025534	66396.0	Mm.290620	NM_025534	ENSMUSG00000079084	Ccdc82	2310043N13Rik	coiled-coil domain containing 82	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-142521507-4	chr3	142521416	142521616	+	988.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_153564, exon 11 of 11)	3' UTR (NM_153564, exon 11 of 11)	-8820.0	NM_001083312	229900.0	Mm.45740	NM_145545	ENSMUSG00000040253	Gbp7	9830147J24Rik	guanylate binding protein 7	protein-coding	1.26252912228323	0.535859874996747	0.518882745644801	1.96601164574826	0.485652435541932	0.539610758397992	0.522675994793696	1.83830976374496	-0.66376390630388	0.838308190585273	0.998431161219273
Merged-chr16-52086848-2	chr16	52086748	52086948	+	700.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033238, intron 3 of 17)	intron (NM_001033238, intron 3 of 17)	55299.0	NM_001033238	208650.0	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-11657364-4	chr18	11657261	11657461	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045526)	promoter-TSS (NR_045526)	12.0	NM_001081223	225182.0	Mm.154275	NM_175458	ENSMUSG00000041238	Rbbp8	9930104E21Rik|CtIP|RBBP-8|RIM|SAE2	retinoblastoma binding protein 8, endonuclease	protein-coding	4.58759000547043	5.20299490301036	5.30826234790062	5.29321144763146	4.22426951020406	4.03975791681116	4.3984607920703	5.44381982038172	-0.564508537110506	0.154772690168833	0.610069793551649
Merged-chr3-142263900-3	chr3	142263793	142263993	+	597.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001190854, intron 8 of 12)	MTB_Mm|LTR|ERVL-MaLR	-94468.0	NM_001277216	12167.0	Mm.39089	NM_007560	ENSMUSG00000052430	Bmpr1b	AI385617|ALK-6|AV355320|Acvrlk6|Alk6|BMPR-1B|BMPR-IB|CFK-43a|SKR6	bone morphogenetic protein receptor, type 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-61696391-2	chr10	61696291	61696491	+	719.666687	f1_balb.idr|f1_c57bl6.idr	exon (NM_001272090, exon 1 of 4)	exon (NM_001272090, exon 1 of 4)	805.0	NR_073587	71767.0	Mm.71514	NM_027912	ENSMUSG00000020087	Tysnd1	1300019N10Rik	trypsin domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97706853-2	chr11	97706753	97706953	+	548.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_011971, exon 3 of 6)	exon (NM_011971, exon 3 of 6)	3419.0	NM_011971	26446.0	Mm.21874	NM_011971	ENSMUSG00000069744	Psmb3	AL033320|C10-II	proteasome (prosome, macropain) subunit, beta type 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81168552-2	chr10	81168452	81168652	+	986.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021501)	promoter-TSS (NM_021501)	-832.0	NM_021501	59004.0	Mm.34428	NM_021501	ENSMUSG00000004934	Pias4	PIASY|Pias-gamma|Piasg	protein inhibitor of activated STAT 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-126019193-4	chr4	126019100	126019300	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5459.0	NR_045561	12986.0	Mm.271701	NM_007782	ENSMUSG00000028859	Csf3r	Cd114|Csfgr|G-CSF-R|G-CSFR	colony stimulating factor 3 receptor (granulocyte)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70618279-4	chr14	70618151	70618351	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001252663, exon 2 of 14)	exon (NM_001252663, exon 2 of 14)	318.0	NM_001252666	13829.0	Mm.210863	NM_013514	ENSMUSG00000022099	Dmtn	AI325486|Epb4.9|Epb49|dematin	dematin actin binding protein	protein-coding	4.61668871480419	3.97101969058522	4.43507874021683	4.20576630106982	4.90667197940133	4.6639835811152	4.79866060972639	4.85842492992511	0.59704584065769	0.101125644947386	0.494822792854299
Merged-chr5-54713798-2	chr5	54713678	54713878	+	783.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	363786.0	NR_038045	330086.0	Mm.254449	NM_177871	ENSMUSG00000105912	Gm10440	D130065D13	predicted gene 10440	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117816853-2	chr10	117816753	117816953	+	688.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_024457, intron 7 of 7)	intron (NM_024457, intron 7 of 7)	-24148.0	NM_134010	103468.0	Mm.12568	NM_134010	ENSMUSG00000052798	Nup107	AW541137|C76801	nucleoporin 107	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-51966737-6	chr12	51966684	51966884	+	849.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177171, intron 1 of 35)	intron (NM_177171, intron 1 of 35)	4537.0	NM_177171	320487.0	Mm.131941	NM_177171	ENSMUSG00000035181	Heatr5a	C230081H03Rik|D930036F22Rik|mKIAA1316	HEAT repeat containing 5A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-37903298-4	chr1	37903180	37903380	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12803.0	NM_027098	107734.0	Mm.26614	NM_027098	ENSMUSG00000026087	Mrpl30	2310001L22Rik|L30mt|MRP-L28|MRP-L30|Rpml28	mitochondrial ribosomal protein L30	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-91677563-4	chr6	91677466	91677666	+	809.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6501.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-23208905-2	chr8	23208818	23209018	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_018743)	promoter-TSS (NM_018743)	-465.0	NM_018743	102247.0	Mm.200898	NM_018743	ENSMUSG00000031545	Gpat4	AU041707|AW545732|Agpat6|Tsarg7	glycerol-3-phosphate acyltransferase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-55960237-4	chr4	55960137	55960337	+	890.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-427762.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-8807756-1	chr5	8807656	8807856	+	684.0	f0_balb.idr	intron (NM_011075, intron 4 of 27)	RLTR20B2|LTR|ERVK	-9233.0	NR_152132	330031.0	Mm.389059	NR_152132		Gm5106	A230021K14|EG330031	predicted gene 5106	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53038814-2	chr4	53038714	53038914	+	974.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 44 of 49)	intron (NM_013454, intron 44 of 49)	26934.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72433805-1	chr6	72433705	72433905	+	546.0	f1_balb.idr	3' UTR (NM_145569, exon 9 of 9)	3' UTR (NM_145569, exon 9 of 9)	-4878.0	NR_046011	78108.0	Mm.440743	NR_046011	ENSMUSG00000108591	Particl	4930414L22Rik|AI449819	promoter of Mat2a antisense radiation induced circulating long non-coding RNA	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-25270060-2	chr17	25269960	25270160	+	902.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011665, intron 1 of 6)	intron (NM_011665, intron 1 of 6)	3371.0	NM_001177610	22196.0	Mm.240044	NM_011665	ENSMUSG00000015120	Ube2i	5830467E05Rik|UBC9|Ubce2i|Ubce9	ubiquitin-conjugating enzyme E2I	protein-coding	-1.5061220274826	-1.47360709383584	-1.48343987814663	-1.49151681994238	-1.50383953926072	-1.47147628845725	-1.0170701920923	-1.49007105122263	2.15652851593596	0.535359572134045	1
Merged-chr4-133156587-4	chr4	133156456	133156656	+	800.049988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153423, intron 1 of 8)	L2|LINE|L2	25923.0	NM_153423	242687.0	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	1.75937065099627	0.914971086912453	0.897413264754072	1.66908714217057	2.12771740676756	0.918875931377866	1.12940509171662	1.8787324324732	0.763736148755603	0.574940129012173	0.965286201225318
Merged-chr2-112448276-4	chr2	112448173	112448373	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB2|LINE|L1	-6752.0	NM_133749	73024.0	Mm.268027	NM_133749	ENSMUSG00000055943	Emc7	2900064A13Rik|AI451465|ORF3|c11orf3	ER membrane protein complex subunit 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-126108314-2	chr4	126108161	126108361	+	650.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028800, intron 1 of 10)	intron (NM_028800, intron 1 of 10)	4304.0	NM_001145827	74178.0	Mm.440269	NM_028800	ENSMUSG00000042608	Stk40	2310004N11Rik|AI428792	serine/threonine kinase 40	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-36047884-2	chr2	36047784	36047984	+	926.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026703, intron 1 of 3)	intron (NM_026703, intron 1 of 3)	1408.0	NM_026703	68375.0	Mm.19834	NM_026703	ENSMUSG00000026895	Ndufa8	0610033L03Rik|AW261656	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81277469-2	chr10	81277369	81277569	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013769, intron 13 of 20)	intron (NM_013769, intron 13 of 20)	5872.0	NR_037218	100526465.0		NR_037218	ENSMUSG00000092781	Mir3057	mir-3057|mmu-mir-3057	microRNA 3057	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-113351774-2	chr13	113351674	113351874	+	668.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	142115.0	NM_023612	71690.0	Mm.38929	NM_023612	ENSMUSG00000042379	Esm1	0610042H23Rik|AV004503|ESM-1	endothelial cell-specific molecule 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119943899-3	chr11	119943762	119943962	+	959.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037754, intron 1 of 13)	intron (NM_001037754, intron 1 of 13)	770.0	NM_130862	108100.0	Mm.197534	NM_130862	ENSMUSG00000025372	Baiap2	IRSp53|R75030	brain-specific angiogenesis inhibitor 1-associated protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-57820668-4	chr9	57820570	57820770	+	901.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019689, intron 1 of 7)	intron (NM_019689, intron 1 of 7)	13564.0	NM_019689	56380.0	Mm.425588	NM_019689	ENSMUSG00000004661	Arid3b	Bdp|Dri2	AT rich interactive domain 3B (BRIGHT-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-25606732-4	chr15	25606635	25606835	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15815.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-45889766-3	chr4	45889722	45889922	+	660.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198660)	promoter-TSS (NM_198660)	-481.0	NM_198660	381522.0	Mm.54220	NM_198660	ENSMUSG00000035539	Ccdc180	E230008N13Rik|Gm1025	coiled-coil domain containing 180	protein-coding	0.227314433880298	1.19069067274218	0.77853850518981	0.239780899560001	0.229185402405105	0.258731135736894	1.13821665230655	0.241078043698699	-0.658929149730951	0.740711498291123	1
Merged-chr17-65773930-2	chr17	65773830	65774030	+	995.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-1178.0	NM_133685	106572.0	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-87024272-2	chr11	87024172	87024372	+	692.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-30510.0	NM_001005341	77864.0	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-83555181-4	chr9	83555081	83555281	+	999.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172507, intron 1 of 3)	intron (NM_172507, intron 1 of 3)	6843.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	3.79358162527282	3.99528997072499	3.44462676539798	3.16889369015935	2.57899342384838	3.96020197515338	3.28824791407822	2.97495745815831	-0.532727009709185	0.365190059086041	0.861036332257394
Merged-chr1-134518780-4	chr1	134518679	134518879	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24119.0	NM_145510	98710.0	Mm.198119	NM_145510	ENSMUSG00000042229	Rabif	AI842864|AW549708|E130318E12Rik|MSS4|RASGFR3	RAB interacting factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191268006-6	chr1	191267924	191268124	+	836.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43570.0	NR_151547	100504360.0	Mm.16927	NM_001033188		D730003I15Rik	AU020850	RIKEN cDNA D730003I15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-116676649-4	chr6	116676555	116676755	+	995.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2819.0	NM_178045	213391.0	Mm.257931	NM_178045	ENSMUSG00000042129	Rassf4	3830411C14Rik|AD037|AI586137	Ras association (RalGDS/AF-6) domain family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-123393907-2	chr7	123393807	123394007	+	657.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025304, intron 1 of 10)	MER67A|LTR|ERV1	-13910.0	NM_001355050	30949.0	Mm.260527	NM_025304	ENSMUSG00000030763	Lcmt1	AL033290|LCMT-1|Lcmt	leucine carboxyl methyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-3178443-1	chr11	3178343	3178543	+	725.0	f0_balb.idr	intron (NM_030207, intron 5 of 32)	B2_Mm2|SINE|B2	15020.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-13465833-2	chr9	13465733	13465933	+	777.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34472.0	NR_028271	18689.0	Mm.41972	NM_008835	ENSMUSG00000031802	Phxr4	Sp5	per-hexamer repeat gene 4	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96159646-2	chr3	96159546	96159746	+	979.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001025614, exon 12 of 12)	3' UTR (NM_001025614, exon 12 of 12)	-2324.0	NM_181409	194126.0	Mm.268536	NM_181409	ENSMUSG00000045934	Mtmr11	AI035306|BC051083|Cra	myotubularin related protein 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180587971-4	chr1	180587855	180588055	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_105869)	TTS (NR_105869)	754.0	NR_105869	102466761.0		NR_105869	ENSMUSG00000098926	Mir6904	Gm27426|mmu-mir-6904	microRNA 6904	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-25835093-4	chr15	25834989	25835189	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8209.0	NM_001034851	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83442542-2	chr6	83442442	83442642	+	828.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183138)	promoter-TSS (NM_183138)	787.0	NR_028382	320775.0	Mm.434334	NR_028382	ENSMUSG00000051844	B230319C09Rik	-	RIKEN cDNA B230319C09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-3446777-2	chr17	3446677	3446877	+	661.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011878, intron 9 of 26)	intron (NM_011878, intron 9 of 26)	-35538.0	NM_001286758	24001.0	Mm.137134	NM_011878	ENSMUSG00000023800	Tiam2	3000002F19Rik|STEF|mKIAA2016	T cell lymphoma invasion and metastasis 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-12957686-2	chr7	12957578	12957778	+	583.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8160.0	NM_001362140	243834.0	Mm.133086	NM_178732	ENSMUSG00000004500	Zfp324	A930002M05|D430030K24Rik|ZF5128	zinc finger protein 324	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167249236-2	chr2	167249136	167249336	+	786.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8699.0	NM_008968	19223.0	Mm.2339	NM_008968	ENSMUSG00000017969	Ptgis	Cyp8|Cyp8a1|Pgis	prostaglandin I2 (prostacyclin) synthase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-130337630-3	chr6	130337505	130337705	+	990.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289605)	promoter-TSS (NM_001289605)	21.0	NM_001289605	16634.0	Mm.425338	NM_010648	ENSMUSG00000067591	Klra3	5E6|Ly49c|NK-2.1|Nk-2|Nk2|Nk2.1	killer cell lectin-like receptor, subfamily A, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-59294827-4	chr4	59294729	59294929	+	984.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4_|SINE|ID	34778.0	NR_105031	101055769.0	Mm.421401	NR_105031		Gm12596	-	predicted gene 12596	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-54586405-4	chr9	54586309	54586509	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029573)	promoter-TSS (NM_029573)	-102.0	NM_029573	67834.0	Mm.279195	NM_029573	ENSMUSG00000032279	Idh3a	1110003P10Rik|1500012E04Rik|AA407078|AI316514	isocitrate dehydrogenase 3 (NAD+) alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-143050467-4	chr5	143050382	143050582	+	978.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359851, intron 12 of 15)	PB1D11|SINE|Alu	62538.0	NM_207110	108086.0	Mm.381440	NM_080561	ENSMUSG00000045078	Rnf216	2810055G22Rik|AI647468|AU019462|C86502|F830018F18Rik|TRIAD3|UIP83|Ubce7ip1	ring finger protein 216	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-3284037-4	chr2	3283939	3284139	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290370)	promoter-TSS (NM_001290370)	-173.0	NM_008708	18108.0	Mm.65021	NM_008708	ENSMUSG00000026643	Nmt2	A930001K02Rik|AI605445|AU044698|hNMT-2	N-myristoyltransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80057567-4	chr7	80057463	80057663	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175433, intron 1 of 4)	intron (NM_175433, intron 1 of 4)	17694.0	NR_045695	100859962.0	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	2.21796784596727	2.33424290280687	3.11786423303719	1.99371388033771	2.61263707306894	3.05426495706776	3.45200907487265	3.78868671306746	1.45285388355059	0.0434472724389076	0.299041640675149
Merged-chr11-52097664-2	chr11	52097564	52097764	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1160.0	NM_019411	19052.0	Mm.260288	NM_019411	ENSMUSG00000020349	Ppp2ca	PP2A|R75353	protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-102479833-2	chr11	102479733	102479933	+	577.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001159492, exon 8 of 8)	exon (NM_001159492, exon 8 of 8)	-9950.0	NM_010575	16399.0	Mm.26646	NM_010575	ENSMUSG00000034664	Itga2b	AI172977|CD41|CD41B|GpIIb|alphaIIb	integrin alpha 2b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153015419-4	chr2	153015292	153015492	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178939)	promoter-TSS (NM_178939)	-9.0	NM_178939	68559.0	Mm.12746	NM_178939	ENSMUSG00000027472	Pdrg1	1110004D19Rik|AU020945|AV006589|Pdrg	p53 and DNA damage regulated 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-54811431-4	chr11	54811344	54811544	+	991.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8475.0	NR_040284	432562.0	Mm.406948	NR_040284	ENSMUSG00000086789	Lyrm7os	Gm12228	LYR motif containing 7, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114570632-2	chr11	114570532	114570732	+	549.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-97911.0	NM_023372	67671.0	Mm.238817	NM_023372	ENSMUSG00000057322	Rpl38	0610025G13Rik|Rbt|Ts|Tss	ribosomal protein L38	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-66220557-4	chr17	66220463	66220663	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	97043.0	NM_001348292	320209.0	Mm.259605	NM_001003919	ENSMUSG00000035842	Ddx11	4732462I11Rik|CHL1|CHLR1|KRG2|essa15a	DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-33427224-4	chr2	33427134	33427334	+	904.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276332, intron 1 of 1)	MIRb|SINE|MIR	4090.0	NM_001085507	241311.0	Mm.296512	NM_001085507	ENSMUSG00000068966	Zbtb34	Gm349|mKIAA1993	zinc finger and BTB domain containing 34	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97146962-2	chr11	97146862	97147062	+	745.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_106094)	promoter-TSS (NR_106094)	-543.0	NR_106094	102466822.0		NR_106094	ENSMUSG00000099286	Mir7235	Gm27986|mmu-mir-7235	microRNA 7235	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-104547460-4	chr14	104547369	104547569	+	946.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24803.0	NM_026047	72486.0	Mm.291811	NM_026047	ENSMUSG00000022120	Rnf219	2610206B13Rik|2810449K13Rik|AI451544	ring finger protein 219	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-98723173-2	chr15	98723073	98723273	+	646.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_153518, exon 8 of 8)	3' UTR (NM_153518, exon 8 of 8)	4454.0	NM_001357893	66120.0	Mm.30729	NM_024169	ENSMUSG00000003355	Fkbp11	1110002O23Rik|FKBP-11	FK506 binding protein 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-16553483-4	chr5	16553391	16553591	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010427)	promoter-TSS (NM_010427)	-4.0	NM_001289460	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97098831-3	chr11	97098740	97098940	+	776.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_019507, exon 6 of 6)	exon (NM_019507, exon 6 of 6)	16491.0	NM_019507	57765.0	Mm.94519	NM_019507	ENSMUSG00000001444	Tbx21	TBT1|Tbet|Tblym	T-box 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129517074-1	chr4	129516974	129517174	+	555.0	f1_balb.idr	intron (NM_008228, intron 12 of 13)	intron (NM_008228, intron 12 of 13)	3493.0	NM_010807	17357.0	Mm.424974	NM_010807	ENSMUSG00000047945	Marcksl1	AL022768|AW215397|AW536807|D4Bc1|F52|MacMARCKS|Macs2|Macs3|Mlp|Mrp	MARCKS-like 1	protein-coding	1.21216053864802	0.508395237039318	0.497590947484924	0.489144760649463	0.796696480271747	1.3348295405266	1.37448324265952	0.490627495173923	1.50429750431014	0.380975024567838	0.872649550356036
Merged-chr15-79360358-2	chr15	79360258	79360458	+	858.900024	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001253817)	TTS (NM_001253817)	11956.0	NM_001304832	17133.0	Mm.86646	NM_010755	ENSMUSG00000042622	Maff	-	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein F (avian)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-82246613-4	chr12	82246490	82246690	+	957.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167983, intron 2 of 23)	L1M4c|LINE|L1	-64759.0	NM_172579	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-93725860-3	chr11	93725797	93725997	+	854.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	159869.0	NM_001013375	217109.0	Mm.379350	NM_001013375	ENSMUSG00000054079	Utp18	6230425C22Rik|6430513M13|Wdr50	UTP18 small subunit processome component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19750818-2	chr7	19750718	19750918	+	910.7000119999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-1245.0	NM_001159724	19294.0	Mm.4341	NM_008990	ENSMUSG00000062300	Nectin2	AI325026|AI987993|Cd112|MPH|Pvr|Pvrl2|Pvs|nectin-2	nectin cell adhesion molecule 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118491636-2	chr11	118491536	118491736	+	717.25	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001039167, exon 15 of 15)	3' UTR (NM_001039167, exon 15 of 15)	14804.0	NM_001359368	217364.0	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24745739-4	chr17	24745635	24745835	+	964.716675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7253.0	NM_001357342	328779.0	Mm.328848	NM_001012402	ENSMUSG00000039628	Hs3st6	3-OST-6	heparan sulfate (glucosamine) 3-O-sulfotransferase 6	protein-coding	1.65156314237253	0.663867498525249	1.16864736023292	1.1293889887834	1.45613829897228	0.666504880542581	0.654681507490935	0.837311501859196	-1.0212347058689	0.506674075235283	0.942877002571689
Merged-chr18-34955255-2	chr18	34955164	34955364	+	700.0	f0_balb.idr|f1_balb.idr	promoter-TSS (NM_010481)	promoter-TSS (NM_010481)	-913.0	NM_010481	15526.0	Mm.209419	NM_010481	ENSMUSG00000024359	Hspa9	74kDa|Csa|Grp75|Hsc74|Hsp74|Hsp74a|Hspa9a|Mortalin|Mot-2|Mot2|Mthsp70|Pbp74	heat shock protein 9	protein-coding	2.01048787016577	1.23257161990136	2.37865519465915	2.39269433745788	2.02741677437943	1.23816792750083	2.08777330325396	1.90043663829052	-0.604321084671334	0.569205611389536	0.962718661854691
Merged-chr10-127422230-4	chr10	127422122	127422322	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359246, intron 1 of 23)	intron (NM_001359246, intron 1 of 23)	1355.0	NM_001359243	71750.0	Mm.29342	NM_027900	ENSMUSG00000025404	R3hdm2	1300003K24Rik|AU041262|mKIAA1002	R3H domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-145747316-4	chr6	145747172	145747372	+	935.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-61111.0	NM_027760	71323.0	Mm.158669	NM_027760	ENSMUSG00000030259	Rassf8	5133400D11Rik|AA815821|AW123240|Hoj1|mHoj-1	Ras association (RalGDS/AF-6) domain family (N-terminal) member 8	protein-coding	-1.50561175621786	-1.47331375025452	-1.02203377115094	-1.49110398925286	-1.50334449591826	-1.47119716082604	-1.48086985756939	-1.48966786617048	-2.07776723614574	0.550394407909386	1
Merged-chr2-44984247-2	chr2	44984147	44984347	+	811.833313	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001355289, exon 11 of 11)	3' UTR (NM_001355289, exon 11 of 11)	38930.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99715074-4	chr15	99714964	99715164	+	847.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_155353)	TTS (NR_155353)	-2529.0	NM_010271	14555.0	Mm.252391	NM_010271	ENSMUSG00000023019	Gpd1	AI747587|Gdc-1|Gdc1|mKIAA4010	glycerol-3-phosphate dehydrogenase 1 (soluble)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-120030479-1	chr2	120030379	120030579	+	607.0	f1_balb.idr	exon (NM_001114637, exon 3 of 8)	exon (NM_001114637, exon 3 of 8)	-2954.0	NM_145378	211429.0	Mm.41467	NM_145378	ENSMUSG00000098488	Pla2g4b	A030011C02Rik|Gm1013|cPLA2-beta	phospholipase A2, group IVB (cytosolic)	protein-coding	0.584678656238155	0.834921189279526	0.63789283857348	1.0121916033692	0.42961648891704	0.457225945410067	0.643506327855484	1.37882203474505	0.15264242245826	0.924808874753327	1
Merged-chr18-64972389-1	chr18	64972289	64972489	+	740.0	f0_balb.idr	intron (NM_001114386, intron 1 of 30)	B4A|SINE|B4	-51138.0	NM_031881	83814.0	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	0.25865088243761	0.284449604047582	0.77718012698159	1.29322114176614	0.565027532589326	0.682800963356845	0.277935863776651	0.270714423362511	-1.5369467157534	0.413278847031575	1
Merged-chr5-151211063-4	chr5	151210951	151211151	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20858.0	NR_153382	243362.0	Mm.209272	NM_146258	ENSMUSG00000016128	Stard13	DLC2|GT650	StAR-related lipid transfer (START) domain containing 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-78410887-3	chr17	78410780	78410980	+	836.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360407, intron 2 of 9)	intron (NM_001360407, intron 2 of 9)	7272.0	NM_001285949	225020.0	Mm.236835	NM_199448	ENSMUSG00000056121	Fez2	9030616F16|D17Ertd315e	fasciculation and elongation protein zeta 2 (zygin II)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-22972935-4	chr11	22972764	22972964	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361661)	promoter-TSS (NM_001361661)	2.0	NM_001361661	17846.0	Mm.259903	NM_144514	ENSMUSG00000051355	Commd1	AI256843|Murr1|U2/Mu	COMM domain containing 1	protein-coding	1.93116854327857	1.93188118895803	2.29882533782118	2.04084424956029	1.07379567659466	1.15087550339007	2.31801922549922	1.52149204430645	-1.17257340196778	0.295095948176439	0.798382708859196
Merged-chr7-45572139-3	chr7	45572034	45572234	+	861.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001243052, intron 1 of 10)	intron (NM_001243052, intron 1 of 10)	855.0	NM_001243052	12036.0	Mm.24210	NM_009737	ENSMUSG00000030826	Bcat2	Bcat(m)|Bcat-2|Eca40	branched chain aminotransferase 2, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-44523128-2	chr11	44523028	44523228	+	693.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166553, intron 1 of 5)	intron (NM_001166553, intron 1 of 5)	3751.0	NM_001166553	74315.0	Mm.156771	NM_028862	ENSMUSG00000019189	Rnf145	3732413I11Rik|TMRF1	ring finger protein 145	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-93729333-4	chr11	93729229	93729429	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	156437.0	NM_001013375	217109.0	Mm.379350	NM_001013375	ENSMUSG00000054079	Utp18	6230425C22Rik|6430513M13|Wdr50	UTP18 small subunit processome component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-39129612-2	chr6	39129512	39129712	+	681.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045813, intron 1 of 3)	L1VL4|LINE|L1	11139.0	NR_045813	75379.0	Mm.348014	NR_045813	ENSMUSG00000073144	4930599N23Rik	-	RIKEN cDNA 4930599N23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-40402431-3	chr19	40402335	40402535	+	948.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001034964)	promoter-TSS (NM_001034964)	-125.0	NM_001034964	20411.0	Mm.210815	NM_009166	ENSMUSG00000025006	Sorbs1	2310065E01Rik|9530001P15Rik|CAP|SH3P12|Sh3d5|mKIAA1296	sorbin and SH3 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89360486-3	chr3	89360397	89360597	+	806.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029974, intron 3 of 15)	L2|LINE|L2	4756.0	NM_029974	77772.0	Mm.164013	NM_029974	ENSMUSG00000042672	Dcst1	A330106H01Rik	DC-STAMP domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-10936876-2	chr16	10936776	10936976	+	580.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22079.0	NR_131135	545180.0	Mm.373756	NR_131135	ENSMUSG00000095369	Gm21859	-	predicted gene, 21859	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69703074-1	chr11	69702974	69703174	+	565.0	f1_balb.idr	Intergenic	L1MC4|LINE|L1	-6976.0	NM_001159503	619441.0	Mm.8983	NM_001034097	ENSMUSG00000018752	Tnfsfm13	Tnfsf12-Tnfsf13|Tnfsf12Tnfsf13|Tnfsf12tnfsf13|Twe-pril	tumor necrosis factor (ligand) superfamily, membrane-bound member 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-101029242-7	chr12	101029136	101029336	+	997.6493529999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001362342)	promoter-TSS (NM_001362342)	-345.0	NM_026681	68339.0	Mm.156217	NM_026681	ENSMUSG00000021182	Ccdc88c	0610010D24Rik|AV000935|AW324073|Daple|mKIAA1509	coiled-coil domain containing 88C	protein-coding	3.99131068990457	3.90365295875097	4.70892774314226	3.24370736735609	3.81961765711315	2.98730377291091	4.28512370139715	2.446309629944	-0.686239684290384	0.246122234971345	0.745369203065001
Merged-chr8-126869132-4	chr8	126869019	126869219	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	20099.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-11461528-2	chr8	11461428	11461628	+	803.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_011227, intron 1 of 1)	intron (NM_011227, intron 1 of 1)	-16401.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-105824114-2	chr5	105824014	105824214	+	648.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-52454.0	NR_030777	54367.0	Mm.248876	NM_018759	ENSMUSG00000029290	Zfp326	5730470H14Rik|ZAN75|Znf326	zinc finger protein 326	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-21810319-1	chr10	21810219	21810419	+	686.0	f1_c57bl6.idr	Intergenic	Intergenic	-71865.0	NM_001161845	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	0.421427890189793	-0.0450050129473743	0.725997552466444	-0.0548248915045602	-0.0608859205001649	-0.0437578233021513	0.290813308837794	-0.0540765655996299	-2.13294705398965	0.352503013998692	1
Merged-chr10-111662873-2	chr10	111662773	111662973	+	549.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68600.0	NR_045344	71321.0	Mm.410785	NR_045344	ENSMUSG00000097082	4933440J02Rik	-	RIKEN cDNA 4933440J02 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-34884542-2	chr6	34884442	34884642	+	586.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013366, intron 13 of 14)	intron (NM_001013366, intron 13 of 14)	-6477.0	NM_001135611	78412.0	Mm.248440	NM_199145	ENSMUSG00000046806	3110062M04Rik	AL023049|Cyren|Mri	RIKEN cDNA 3110062M04 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-122644401-4	chr14	122644304	122644504	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153443, intron 8 of 24)	ORR1B2|LTR|ERVL-MaLR	110076.0	NM_144844	110821.0	Mm.23876	NM_144844	ENSMUSG00000041650	Pcca	C79630	propionyl-Coenzyme A carboxylase, alpha polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-81319441-2	chr7	81319341	81319541	+	671.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_008803, exon 16 of 22)	exon (NM_008803, exon 16 of 22)	25793.0	NM_009092	20068.0	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-11431402-4	chr19	11431321	11431521	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12137.0	NM_021718	60361.0	Mm.33957	NM_021718	ENSMUSG00000056290	Ms4a4b	AI463180|Chandra|Ly116	membrane-spanning 4-domains, subfamily A, member 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-36268397-2	chr10	36268297	36268497	+	800.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-238410.0	NM_001253355	319415.0	Mm.332442	NM_001081208	ENSMUSG00000044499	Hs3st5	D930005L05Rik|Gm1151|Hs3ost5	heparan sulfate (glucosamine) 3-O-sulfotransferase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-123863368-4	chr9	123863276	123863476	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1347.0	NM_011798	23832.0	Mm.390241	NM_011798	ENSMUSG00000060509	Xcr1	Ccxcr1|Gpr5|mXcr1	chemokine (C motif) receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-121804385-4	chr11	121804290	121804490	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25828.0	NM_029049	74675.0	Mm.61213	NM_029049	ENSMUSG00000039198	Ptchd3	4930451E13Rik|4933440L20Rik|RNDEu-3	patched domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-56741697-2	chr19	56741597	56741797	+	709.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19325.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-84019210-4	chr12	84019138	84019338	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9736.0	NM_012006	26897.0	Mm.1978	NM_012006	ENSMUSG00000072949	Acot1	ACH2|CTE-1|CTE-I|Cte1|D12Ucla1	acyl-CoA thioesterase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-66857475-4	chr10	66857378	66857578	+	932.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	62906.0	NR_138560	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-17867939-3	chr17	17867809	17868009	+	670.805542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12721.0	NM_008215	15116.0	Mm.255701	NM_008215	ENSMUSG00000003665	Has1	HAS	hyaluronan synthase 1	protein-coding	-1.70064632323792	-1.81294470997006	-1.82198078978096	-1.82940329477929	-1.8407275618158	-1.81098655378014	-1.67775643191689	-1.82807466993338	0.0376840119903865	0.991491645451152	1
Merged-chr15-86219427-2	chr15	86219327	86219527	+	730.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_145476, intron 1 of 12)	L2a|LINE|L2	4968.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-12818666-4	chr19	12818561	12818761	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134152, intron 3 of 8)	L1MA9|LINE|L1	20082.0	NM_134152	107321.0	Mm.313136	NM_134152	ENSMUSG00000024696	Lpxn	4933402K05Rik|A530083L21Rik|AV278559|LDPL	leupaxin	protein-coding	-0.882737915087978	-0.870228400904546	-0.55126555509038	-0.348284664960173	-0.882184352590133	-0.867526913455748	-0.876117308256711	-0.878618780156801	-2.9898294800592	0.321895641750235	1
Merged-chr7-115063129-3	chr7	115063019	115063219	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	111845.0	NR_040319	101786.0	Mm.395157	NR_040317	ENSMUSG00000108379	A730082K24Rik	AU044236	RIKEN cDNA A730082K24 gene	ncRNA	2.80763662002779	3.79539196030257	3.14752365601233	2.85616579482564	3.16968395466373	2.48096047615579	2.84435586412171	3.71036520620625	-0.114564786396495	0.860637091567378	0.998431161219273
Merged-chr5-96922142-1	chr5	96922042	96922242	+	722.0	f1_balb.idr	intron (NR_131152, intron 2 of 2)	intron (NR_131152, intron 2 of 2)	870.0	NR_131152	666266.0	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	2.96095416512013	2.73190073338121	1.77033379340971	1.45123300773319	2.91126633574992	3.4916568522106	3.07292927004395	3.0600553030456	1.40603171036018	0.0760633833241006	0.418371855037848
Merged-chr17-42883124-4	chr17	42883020	42883220	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6696.0	NM_009847	12488.0	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding	3.03527214088809	3.2029044069469	2.66451809552815	3.88801612215471	3.98183246136927	3.81404983175298	3.11379982480334	4.72590261449562	1.10596882779478	0.0568350995696821	0.352589206120499
Merged-chr5-64230313-4	chr5	64230214	64230414	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289514)	promoter-TSS (NM_001289514)	-43.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-83853250-3	chr7	83853153	83853353	+	921.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31088.0	NM_030705	80889.0	Mm.272998	NM_030705	ENSMUSG00000070462	Tlnrd1	AW061151|Mesdc1	talin rod domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-94254241-2	chr2	94254141	94254341	+	723.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7158.0	NR_030431	735259.0		NR_030431	ENSMUSG00000076335	Mir670	Mirn670|mir-670|mmu-mir-670	microRNA 670	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-40786275-1	chr1	40786175	40786375	+	588.0	f0_balb.idr	intron (NM_172499, intron 2 of 5)	intron (NM_172499, intron 2 of 5)	4382.0	NM_172499	211798.0	Mm.235443	NM_172499	ENSMUSG00000041945	Mfsd9	4931419K03Rik	major facilitator superfamily domain containing 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-122068273-2	chr7	122068173	122068373	+	752.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_138589, intron 2 of 6)	intron (NM_138589, intron 2 of 6)	1075.0	NM_138589	28018.0	Mm.282122	NM_138589	ENSMUSG00000030870	Ubfd1	AI467302|D7Wsu105e|D7Wsu128e|Ubph	ubiquitin family domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-35495573-4	chr18	35495493	35495693	+	905.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030749, intron 1 of 9)	intron (NM_030749, intron 1 of 9)	3332.0	NM_030749	81500.0	Mm.291482	NM_030749	ENSMUSG00000024357	Sil1	1810057E01Rik|AI042831|wz	endoplasmic reticulum chaperone SIL1 homolog (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97458184-4	chr6	97458087	97458287	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	1099.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	2.04750124296259	2.00221633379894	1.0863173107879	2.32205313932337	1.89004730710647	1.11292989230304	1.68113899174667	1.47460604492016	-1.08365268506878	0.344573271067438	0.845794803766071
Merged-chr14-60678753-2	chr14	60678653	60678853	+	784.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033272, intron 1 of 12)	intron (NM_001033272, intron 1 of 12)	44048.0	NM_001033272	219140.0	Mm.149776	NM_001033272	ENSMUSG00000021990	Spata13	C79050|ESTM11|X83327|mFLJ00298	spermatogenesis associated 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-121403412-2	chr10	121403312	121403512	+	652.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38322.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	-0.578100182609518	-0.634987263975988	-0.81520650250896	-0.667303430426985	-0.572268550734857	-0.810026249815082	-0.814650650232938	-0.816805990504527	-0.997693285036978	0.71148843798544	1
Merged-chr12-70967454-2	chr12	70967354	70967554	+	716.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13D3A1|LTR|ERVK	-7169.0	NM_001310595	19167.0	Mm.296338	NM_011184	ENSMUSG00000060073	Psma3	Lmpc8	proteasome (prosome, macropain) subunit, alpha type 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25266812-2	chr7	25266712	25266912	+	937.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302811)	promoter-TSS (NM_001302811)	-887.0	NM_001302811	71722.0	Mm.28833	NM_027882	ENSMUSG00000005442	Cic	1200010B10Rik|mKIAA0306	capicua transcriptional repressor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-17051740-6	chr11	17051640	17051840	+	881.861084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029861)	promoter-TSS (NM_029861)	-194.0	NM_029861	380686.0	Mm.425666	NM_029861	ENSMUSG00000044629	Cnrip1	1500041B16Rik|3110054C06Rik|5330437A18Rik|AI854501|C2orf32	cannabinoid receptor interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-114776917-2	chr5	114776810	114777010	+	609.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026718, intron 1 of 14)	intron (NM_026718, intron 1 of 14)	1770.0	NM_026718	68420.0	Mm.275554	NM_026718	ENSMUSG00000041870	Ankrd13a	1100001D10Rik|ANKRD13|AU046136	ankyrin repeat domain 13a	protein-coding	-0.618802996698496	-0.607328694272964	-0.611086729728348	-0.613986951272676	-0.618086468559668	0.0317600808888597	-0.610257766076773	-0.17212621731017	3.41989740960314	0.218146092618797	1
Merged-chr8-108766682-2	chr8	108766582	108766782	+	758.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_007496, intron 1 of 9)	intron (NM_007496, intron 1 of 9)	52038.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-121371644-2	chr10	121371544	121371744	+	611.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029364, intron 2 of 13)	intron (NM_029364, intron 2 of 13)	6554.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-61337347-4	chr9	61337248	61337448	+	756.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35018.0	NM_001083928	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-160019125-4	chr2	160019004	160019204	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040499, intron 1 of 3)	intron (NR_040499, intron 1 of 3)	2451.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-156043217-3	chr1	156043093	156043293	+	709.277771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172843, intron 2 of 6)	intron (NM_172843, intron 2 of 6)	2332.0	NM_022329	240832.0	Mm.253335	NM_022329	ENSMUSG00000050565	Tor1aip2	1110020D10Rik|15kDa|A130072J07|AA103493|AW060462|AW610675|C77739|Ifrg15|Lull1	torsin A interacting protein 2	protein-coding	2.37937972047112	2.59924335110929	2.41915087477801	2.25409053234795	1.69167831887141	1.22826228325061	1.19980140404833	1.77732568664117	-2.56159330211723	0.0127366400850064	0.129138767104147
Merged-chr2-170520379-2	chr2	170520279	170520479	+	586.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-8452.0	NR_040367	100502946.0	Mm.421284	NR_040367	ENSMUSG00000085495	Gm16796	-	predicted gene, 16796	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27042958-4	chr17	27042861	27043061	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13702.0	NM_027544	70772.0	Mm.440437	NM_027544	ENSMUSG00000048731	Ggnbp1	0610031G08Rik|mdf	gametogenetin binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-81055749-3	chr13	81055641	81055841	+	935.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015587, intron 1 of 1)	Lx7|LINE|L1	91667.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-122309893-4	chr6	122309781	122309981	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010749, intron 1 of 6)	intron (NM_010749, intron 1 of 6)	1161.0	NM_010749	17113.0	Mm.249225	NM_010749	ENSMUSG00000007458	M6pr	CD-MPR|Mpr46	mannose-6-phosphate receptor, cation dependent	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-131171588-3	chr2	131171485	131171685	+	983.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_027641, exon 7 of 7)	3' UTR (NM_027641, exon 7 of 7)	3225.0	NM_027641	70997.0	Mm.252722	NM_027641	ENSMUSG00000027329	Spef1	4931426K16Rik|Clamp	sperm flagellar 1	protein-coding	0.548562186996768	0.592088715908446	0.578181247293876	0.567224999943259	1.45173560674449	1.35169545393385	1.79010138932072	0.958310115383648	4.94017204995449	0.00202257992413103	0.0336728685426328
Merged-chr3-90509903-1	chr3	90509803	90510003	+	1000.0	f1_c57bl6.idr	promoter-TSS (NM_001293781)	promoter-TSS (NM_001293781)	-405.0	NM_001293778	66511.0	Mm.154136	NM_023215	ENSMUSG00000001017	Chtop	2500003M10Rik|Fop|Srag	chromatin target of PRMT1	protein-coding	-1.84290330806959	-1.81297841501903	-1.82202794967551	-1.82946150688462	-1.69841214230253	-1.81101734310794	-1.67758883978339	-1.82813090369827	1.43472749533542	0.684151459466795	1
Merged-chr12-102439222-3	chr12	102439152	102439352	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011175, intron 1 of 13)	intron (NM_011175, intron 1 of 13)	561.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-57276165-2	chr17	57276065	57276265	+	992.7999880000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2935.0	NM_001163816	22324.0	Mm.248172	NM_011691	ENSMUSG00000034116	Vav1	Vav|vav-T	vav 1 oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-107049118-1	chr8	107049018	107049218	+	790.0	f1_balb.idr	promoter-TSS (NM_026513)	promoter-TSS (NM_026513)	-504.0	NM_026513	68023.0	Mm.482335	NM_026513	ENSMUSG00000078931	Pdf	2610019N19Rik	peptide deformylase (mitochondrial)	protein-coding	1.06880060386633	1.65870080037976	1.81891730226966	0.911246162891535	1.07545379376843	1.53192682887522	1.83490310546287	1.43159019250708	0.240414000469996	0.846254503889081	0.998431161219273
Merged-chr19-17394007-4	chr19	17393893	17394093	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019437)	promoter-TSS (NM_019437)	-50.0	NM_019437	54391.0	Mm.7013	NM_019437	ENSMUSG00000024712	Rfk	0610038L10Rik|AF031381|KOI-4	riboflavin kinase	protein-coding	6.10586503497438	6.73758715100652	6.58186022017253	5.54273482401244	6.28405944333364	6.08080605286085	6.20430401607389	6.39679200325731	-0.0641041563072199	0.802529049616312	0.998431161219273
Merged-chr2-60825925-1	chr2	60825825	60826025	+	591.0	f0_balb.idr	intron (NM_001141932, intron 2 of 14)	intron (NM_001141932, intron 2 of 14)	55513.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-85957043-1	chr10	85956943	85957143	+	625.0	f0_balb.idr	intron (NM_145422, intron 1 of 11)	intron (NM_145422, intron 1 of 11)	750.0	NM_145422	28088.0	Mm.9257	NM_145422	ENSMUSG00000001783	Rtcb	AI255213|AI463255|D10Wsu52e|FAAP|HSPC117	RNA 2',3'-cyclic phosphate and 5'-OH ligase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-28496879-4	chr2	28496781	28496981	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_139197)	promoter-TSS (NM_139197)	-10.0	NM_139197	227671.0	Mm.484270	NM_139197	ENSMUSG00000026829	Gbgt1	Fgs|Fs	globoside alpha-1,3-N-acetylgalactosaminyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-150830684-2	chr2	150830584	150830784	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_153781, exon 20 of 20)	3' UTR (NM_153781, exon 20 of 20)	11886.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-34490328-4	chr1	34490215	34490415	+	884.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR48A|LTR|ERV1	-8097.0	NM_009355	21755.0	Mm.10725	NM_009355	ENSMUSG00000026125	Prss39	Tesp1	protease, serine 39	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71922815-4	chr8	71922716	71922916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133358)	promoter-TSS (NM_133358)	-9.0	NM_133358	170938.0	Mm.480419	NM_133358	ENSMUSG00000066880	Zfp617	Zfps11-6	zinc finger protein 617	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-31053480-2	chr3	31053380	31053580	+	838.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_008857)	TTS (NM_008857)	14514.0	NR_105975	102465610.0		NR_105975	ENSMUSG00000098890	Mir7008	Gm27752|mmu-mir-7008	microRNA 7008	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-62656279-4	chr2	62656173	62656373	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-8054.0	NM_145523	227960.0	Mm.219877	NM_145523	ENSMUSG00000026893	Gca	5133401E04Rik|AI573844	grancalcin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36918136-3	chr1	36918022	36918222	+	804.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018872, intron 1 of 40)	intron (NM_018872, intron 1 of 40)	21405.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-98746908-4	chr12	98746821	98747021	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001160107)	promoter-TSS (NM_001160107)	-47.0	NM_001160107	75553.0	Mm.25549	NM_029334	ENSMUSG00000021012	Zc3h14	1010001P15Rik|1700016A15Rik|2700069A02Rik|AU014748	zinc finger CCCH type containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-127009901-2	chr1	127009801	127010001	+	776.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-179269.0	NM_001081756	210356.0	Mm.377234	NM_172484	ENSMUSG00000049690	Nckap5	8430408F21|D130011D22Rik|E030049G20Rik|Erih1|Erih2|Gm1548|Nap5	NCK-associated protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21545122-2	chr9	21545022	21545222	+	750.799988	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_206536, exon 6 of 6)	3' UTR (NM_206536, exon 6 of 6)	-1772.0	NM_021531	59035.0	Mm.178115	NM_021531	ENSMUSG00000032185	Carm1	Prmt4	coactivator-associated arginine methyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-79937057-2	chr7	79936957	79937157	+	713.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1793.0	NM_027420	70420.0	Mm.34266	NM_027420	ENSMUSG00000039043	Arpin	2610034B18Rik	actin-related protein 2/3 complex inhibitor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-142709057-2	chr3	142708957	142709157	+	593.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_173763, intron 2 of 13)	intron (NM_173763, intron 2 of 13)	8009.0	NM_001293560	229905.0	Mm.289643	NM_173763	ENSMUSG00000040213	Kyat3	Ccbl2|KATIII|Kat3	kynurenine aminotransferase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-128654942-4	chr8	128654848	128655048	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30706.0	NM_010578	16412.0	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-40970289-2	chr4	40970189	40970389	+	688.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290449)	promoter-TSS (NM_001290449)	-617.0	NM_001290449	74164.0	Mm.247456	NM_023739	ENSMUSG00000028423	Nfx1	1300017N15Rik|3000003M19Rik|NFX.1|TEG-42|Tex42	nuclear transcription factor, X-box binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-21619437-2	chr10	21619337	21619537	+	678.166626	f1_balb.idr|f1_c57bl6.idr	intron (NR_027968, intron 2 of 2)	MLT1I|LTR|ERVL-MaLR	26292.0	NR_027968	67692.0	Mm.54306	NM_183266	ENSMUSG00000050844	1700020N01Rik	-	RIKEN cDNA 1700020N01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-99090077-4	chr10	99089982	99090182	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17000.0	NM_027740	382406.0	Mm.440656	NM_027740	ENSMUSG00000019952	Poc1b	4933430F16Rik|Wdr51b	POC1 centriolar protein B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-27443992-4	chr14	27443895	27444095	+	901.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028945, intron 6 of 23)	Lx7|LINE|L1	15161.0	NM_001114879	218850.0	Mm.247767	NM_028945	ENSMUSG00000040651	Fam208a	4732418E12|4933409E02Rik|D14Abb1e|MommeD6	family with sequence similarity 208, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-61413918-2	chr11	61413818	61414018	+	779.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35843.0	NM_026183	67473.0	Mm.100741	NM_026183	ENSMUSG00000010122	Slc47a1	1300013J15Rik|AI036982|MATE1|mMATE1	solute carrier family 47, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-50996474-4	chr17	50996383	50996583	+	881.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028162, intron 3 of 21)	intron (NM_028162, intron 3 of 21)	162895.0	NM_001285993	72238.0	Mm.120650	NM_028162	ENSMUSG00000023923	Tbc1d5	1600014N05Rik	TBC1 domain family, member 5	protein-coding	2.60469951526112	3.61104208882425	3.41944865188177	2.62244952735547	2.84324800563031	3.77625862548596	3.44546216700429	2.76633369283297	0.220096906147166	0.733413750313466	0.998431161219273
Merged-chr2-22775143-3	chr2	22775035	22775235	+	849.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019456, intron 1 of 13)	intron (NM_019456, intron 1 of 13)	808.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-65537796-4	chr5	65537687	65537887	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310618, intron 1 of 4)	CpG	542.0	NM_001310619	53323.0	Mm.319512	NM_016786	ENSMUSG00000029203	Ube2k	AW492011|D5Ertd601e|E2-25k|HIP-2|Hip2|Hypg|Lig	ubiquitin-conjugating enzyme E2K	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-177258537-4	chr1	177258436	177258636	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-9769.0	NM_011785	23797.0	Mm.235194	NM_011785	ENSMUSG00000019699	Akt3	AI851531|D930002M15Rik|Nmf350	thymoma viral proto-oncogene 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-83858162-4	chr7	83858040	83858240	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME3A|LINE|L1	26201.0	NM_030705	80889.0	Mm.272998	NM_030705	ENSMUSG00000070462	Tlnrd1	AW061151|Mesdc1	talin rod domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-98108477-4	chr15	98108393	98108593	+	841.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163487)	promoter-TSS (NM_001163487)	22.0	NM_001163487	18642.0	Mm.272582	NM_021514	ENSMUSG00000033065	Pfkm	AI131669|ATP-PFK|PFK-A|PFK-M|Pfk-4|Pfk4|Pfka|Pfkx	phosphofructokinase, muscle	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119059047-5	chr11	119059100	119059300	+	814.766663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18287.0	NM_013926	30951.0	Mm.99953	NM_013926	ENSMUSG00000025578	Cbx8	Pc3	chromobox 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-22003329-2	chr9	22003229	22003429	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029939)	promoter-TSS (NM_029939)	341.0	NM_001293650	19089.0	Mm.214593	NM_008925	ENSMUSG00000003402	Prkcsh	80K-H|PKCSH	protein kinase C substrate 80K-H	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-98915035-4	chr10	98914945	98915145	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026482)	promoter-TSS (NM_026482)	-107.0	NM_001359507	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-88537398-4	chr15	88537325	88537525	+	826.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62877.0	NM_027306	70073.0	Mm.45306	NM_027306	ENSMUSG00000054117	Zdhhc25	1700030J15Rik	zinc finger, DHHC domain containing 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-9598634-2	chr3	9598534	9598734	+	612.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133218, intron 1 of 8)	intron (NM_133218, intron 1 of 8)	11451.0	NM_133218	170753.0	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-83430960-3	chr18	83430902	83431102	+	851.9682619999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-105118.0	NR_045361	70960.0	Mm.410834	NR_045361		4921531P14Rik	1700108N05Rik	RIKEN cDNA 4921531P14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70229960-2	chr11	70229860	70230060	+	664.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007528)	promoter-TSS (NM_007528)	-162.0	NM_007528	12029.0	Mm.12930	NM_007528	ENSMUSG00000000317	Bcl6b	Bazf	B cell CLL/lymphoma 6, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115544223-1	chr5	115544123	115544323	+	1000.0	f1_balb.idr	intron (NM_011223, intron 1 of 10)	intron (NM_011223, intron 1 of 10)	-15244.0	NM_007475	11837.0	Mm.5286	NM_007475	ENSMUSG00000067274	Rplp0	36B4|Arbp|L10E	ribosomal protein, large, P0	protein-coding	-0.321003765903533	-0.859787231100318	-0.865505697605698	-0.867720313675353	-0.870840978468054	-0.857095856682429	-0.864871666080143	-0.563772805396373	-0.973016328620917	0.753385479874591	1
Merged-chr16-91731269-4	chr16	91731168	91731368	+	886.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110276, intron 1 of 15)	intron (NM_001110276, intron 1 of 15)	1897.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-63587259-2	chr4	63587159	63587359	+	692.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001356354)	TTS (NM_001356354)	13505.0	NM_001354647	670833.0	Mm.32213	NM_001354647	ENSMUSG00000084782	Gm11213	-	predicted gene 11213	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-32159346-3	chr14	32159240	32159440	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033988)	promoter-TSS (NM_001033988)	-547.0	NM_001033988	27057.0	Mm.371598	NM_019744	ENSMUSG00000056234	Ncoa4	ARA70|Rfg	nuclear receptor coactivator 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4002723-2	chr19	4002623	4002823	+	708.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021791)	promoter-TSS (NM_021791)	-662.0	NM_021791	60425.0	Mm.266972	NM_021791	ENSMUSG00000024871	Doc2g	D830013O18Rik	double C2, gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-12404718-2	chr15	12404618	12404818	+	841.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081064, intron 9 of 23)	RSINE1|SINE|B4	83222.0	NM_025673	66629.0	Mm.157655	NM_025673	ENSMUSG00000022200	Golph3	4733401N08Rik|5730410D03Rik|AW413496	golgi phosphoprotein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-33820932-2	chr18	33820832	33821032	+	623.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013512, intron 18 of 23)	Lx8|LINE|L1	26040.0	NR_038151	69749.0	Mm.248787	NR_038151	ENSMUSG00000087590	Epb41l4aos	2410004N09Rik|Epb4.1l4aos	erythrocyte membrane protein band 4.1 like 4a, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19112813-1	chr7	19112713	19112913	+	629.0	f1_balb.idr	Intergenic	Intergenic	-7046.0	NM_175530	243867.0	Mm.230830	NM_175530	ENSMUSG00000050428	Fbxo46	20D7-FC4|4932704E22Rik|Fbxo34l	F-box protein 46	protein-coding	-0.240545690298764	-0.221649080166845	-0.227781816960254	-0.23255142146256	0.30352991451751	-0.22027415143323	-0.226424479602096	0.816024449297793	4.05271707673458	0.0906823576225176	1
Merged-chr1-152625876-2	chr1	152625776	152625976	+	578.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016846)	promoter-TSS (NM_016846)	-659.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-49053477-2	chr13	49053377	49053577	+	559.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290313, intron 23 of 29)	intron (NM_001290313, intron 23 of 29)	85365.0	NR_015601	68128.0	Mm.426304	NR_015601		Fam120aos	C030044B11Rik	family with sequence similarity 120A, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-62983012-2	chr9	62982912	62983112	+	981.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TTAA)n|Simple_repeat|Simple_repeat	-2133.0	NM_019663	56469.0	Mm.431253	NM_019663	ENSMUSG00000032405	Pias1	2900068C24Rik|Ddxbp1|GBP	protein inhibitor of activated STAT 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-79372864-7	chr8	79372792	79372992	+	970.095215	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008539, intron 1 of 6)	intron (NM_008539, intron 1 of 6)	26576.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-132803722-3	chr7	132803616	132803816	+	758.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_212473, intron 1 of 4)	intron (NM_212473, intron 1 of 4)	9480.0	NM_212473	77938.0	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-88125535-2	chr7	88125435	88125635	+	595.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001143834, intron 10 of 10)	intron (NM_001143834, intron 10 of 10)	-152550.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116850250-3	chr11	116850162	116850362	+	865.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_028865)	TTS (NM_028865)	2832.0	NM_011358	20382.0	Mm.21841	NM_011358	ENSMUSG00000034120	Srsf2	D11Wsu175e|MRF-1|Pr264|SC35|Sfrs10|Sfrs2	serine/arginine-rich splicing factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-5109912-4	chr11	5109787	5109987	+	771.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080595, intron 14 of 14)	intron (NM_080595, intron 14 of 14)	9722.0	NM_001290493	279766.0	Mm.260866	NM_177370	ENSMUSG00000034175	Rhbdd3	Ptag	rhomboid domain containing 3	protein-coding	-0.316014499470142	-0.29770539512494	-0.303644604216667	0.175653902657711	-0.314855514134337	-0.296374244720789	0.738043840806762	-0.307455855292437	1.58662308174373	0.528845190281784	1
Merged-chr11-29728114-4	chr11	29728006	29728206	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024226, intron 1 of 6)	intron (NM_024226, intron 1 of 6)	9543.0	NM_024226	68585.0	Mm.192580	NM_024226	ENSMUSG00000020458	Rtn4	1110020G17Rik|AA407876|AA409940|AA960376|ASY|C130026I10Rik|NOGO|NSP-CL|NgA|Nogo-A|Nogo-B|Nogo-C|mKIAA0886|mKIAA4153	reticulon 4	protein-coding	3.16045193518702	2.26981788712748	3.06462836708711	3.96253823851397	3.5641246854044	3.39396806354865	3.08894004911111	2.6368424315578	-0.0719017877565805	0.913189949564225	0.998431161219273
Merged-chr5-24686861-4	chr5	24686706	24686906	+	911.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305264, intron 1 of 14)	B1_Mur2|SINE|Alu	991.0	NM_001305264	53312.0	Mm.5856	NM_016736	ENSMUSG00000028954	Nub1	4931404D21Rik|6330412F12Rik|BS4|NY-REN-18	negative regulator of ubiquitin-like proteins 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-105224164-3	chr13	105224089	105224289	+	886.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360891, intron 5 of 7)	intron (NM_001360891, intron 5 of 7)	68825.0	NM_027934	71816.0	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	0.899742753416914	0.265181821552467	0.592118169615254	0.564717479178399	0.245371632520034	0.266734400970643	0.95421667082381	0.253875502067806	-0.725627626011589	0.706894255593273	1
Merged-chr9-64956534-2	chr9	64956434	64956634	+	863.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4298.0	NM_001077631	69882.0	Mm.272616	NM_175153	ENSMUSG00000034263	Ints14	2010321M09Rik|Vwa9	integrator complex subunit 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-94545655-2	chr15	94545555	94545755	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029926, intron 1 of 11)	RLTR42-int|LTR|ERVK	1995.0	NM_029926	266632.0	Mm.422858	NM_029926	ENSMUSG00000059883	Irak4	8430405M07Rik|9330209D03Rik|IRAK-4|NY-REN-64	interleukin-1 receptor-associated kinase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-104386933-1	chr10	104386833	104387033	+	654.0	f1_balb.idr	Intergenic	Intergenic	99664.0	NR_105838	102465222.0		NR_105838	ENSMUSG00000099264	Mir6411	Gm27767|mmu-mir-6411	microRNA 6411	ncRNA	-2.05752322593321	-2.15521190974092	-2.16307242109104	-2.16952927915413	-2.17938029103484	-2.15350850414045	-2.16129297361887	-2.16837350464794	-0.683654500252594	0.846597994014493	1
Merged-chr6-72597196-2	chr6	72597096	72597296	+	952.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144917, intron 1 of 12)	intron (NM_144917, intron 1 of 12)	1217.0	NM_144917	232089.0	Mm.167232	NM_144917	ENSMUSG00000056698	Elmod3	AI844780|C330008I15Rik|RBM29|Rbed1	ELMO/CED-12 domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-155284850-3	chr2	155284737	155284937	+	883.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004721, intron 11 of 11)	intron (NM_001004721, intron 11 of 11)	8473.0	NR_046364	66734.0	Mm.196239	NM_025735	ENSMUSG00000027602	Map1lc3a	1010001H21Rik|4922501H04Rik|LC3|LC3a	microtubule-associated protein 1 light chain 3 alpha	protein-coding	3.31716535997324	2.35490369702741	3.81147525253394	3.36341716471358	2.25456927203312	1.62325064746508	3.07906293539092	3.23681238662671	-1.03383263198419	0.170473914954738	0.637841797804662
Merged-chr5-137628094-4	chr5	137628014	137628214	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1009.0	NM_001168652	231798.0	Mm.200763	NM_146164	ENSMUSG00000093445	Lrch4	2810008P14Rik|2900069C24Rik|AI558103|LRN|LRRN4|SAP25|mFLJ00248	leucine-rich repeats and calponin homology (CH) domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-55753167-2	chr16	55753091	55753291	+	649.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	68947.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-118880455-2	chr10	118880355	118880555	+	794.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11552.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-26516456-3	chr2	26516353	26516553	+	790.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12526.0	NR_132655	102639736.0		NR_132655		Gm35978	-	predicted gene, 35978	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118823314-1	chr9	118823214	118823414	+	710.0	f1_balb.idr	intron (NM_001113514, intron 4 of 13)	MIRb|SINE|MIR	-103222.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	1.20387635039683	1.15838701173493	1.13075454173651	1.69853654814177	1.88611951462615	1.61780584182716	1.29778160852969	0.944688020390049	0.673351395882931	0.59457102366274	0.970943251257357
Merged-chr16-57257786-2	chr16	57257686	57257886	+	677.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13B2|LTR|ERVK	-26320.0	NM_001358433	67581.0	Mm.257819	NM_026254	ENSMUSG00000022749	Tbc1d23	4930451A13Rik|AU015720|AU043671|AU043778|D030022P07Rik|W51689	TBC1 domain family, member 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-63083215-2	chr14	63083115	63083315	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D11|SINE|Alu	28142.0	NR_046019	72609.0	Mm.387101	NR_046019		2700070H01Rik	-	RIKEN cDNA 2700070H01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-6629371-2	chr11	6629271	6629471	+	673.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-3304.0	NM_134011	21379.0	Mm.247761	NM_134011	ENSMUSG00000000384	Tbrg4	2310042P22Rik|AA120735|AA408001|AI527316|Cpr2|R74877|Tb-12|mKIAA0948	transforming growth factor beta regulated gene 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-80081158-4	chr9	80081056	80081256	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311110, intron 1 of 23)	ORR1E|LTR|ERVL-MaLR	14253.0	NM_146003	215351.0	Mm.28232	NM_146003	ENSMUSG00000034252	Senp6	2810017C20Rik|E130319N12Rik|Susp1|mKIAA0797	SUMO/sentrin specific peptidase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-38904674-4	chr12	38904568	38904768	+	847.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	120957.0	NM_001163154	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-40980340-2	chr4	40980240	40980440	+	752.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290448, intron 2 of 15)	PB1D10|SINE|Alu	9397.0	NM_023739	74164.0	Mm.247456	NM_023739	ENSMUSG00000028423	Nfx1	1300017N15Rik|3000003M19Rik|NFX.1|TEG-42|Tex42	nuclear transcription factor, X-box binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-50295362-3	chr6	50295259	50295459	+	770.766663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001347213, exon 24 of 24)	3' UTR (NM_001347213, exon 24 of 24)	-33590.0	NM_018769	54722.0	Mm.248361	NM_018769	ENSMUSG00000029821	Gsdme	2310037D07Rik|4932441K13Rik|Dfna5|Dfna5h|EG14210|Fin15	gasdermin E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-28640024-2	chr2	28639924	28640124	+	714.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1209.0	NM_001289575	64930.0	Mm.224354	NM_022887	ENSMUSG00000026812	Tsc1	-	tuberous sclerosis 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-63837268-3	chr5	63837169	63837369	+	925.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029554, intron 1 of 3)	MLT1B|LTR|ERVL-MaLR	24774.0	NM_029554	76261.0	Mm.38143	NM_029554	ENSMUSG00000060512	0610040J01Rik	AI662686	RIKEN cDNA 0610040J01 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-119195340-4	chr4	119195233	119195433	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024462)	promoter-TSS (NM_024462)	23.0	NM_024462	69216.0	Mm.36697	NM_024462	ENSMUSG00000028643	Svbp	2410005K17Rik|AI851162|Ccdc23	small vasohibin binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-106456881-2	chr9	106456781	106456981	+	899.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021567, intron 1 of 12)	intron (NM_021567, intron 1 of 12)	3043.0	NM_021567	59092.0	Mm.286394	NM_021567	ENSMUSG00000023495	Pcbp4	1200003L19Rik|AlphaCP-4	poly(rC) binding protein 4	protein-coding	0.819186689778305	0.684239283431084	0.882518576390028	1.49749881984048	0.82521517597962	0.68713889970422	1.66285633293537	1.50729292819643	0.898492397172896	0.537719360327563	0.953963493057627
Merged-chr3-7005779-2	chr3	7005679	7005879	+	658.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2B2|LINE|L1	-360825.0	NM_008862	18767.0	Mm.3193	NM_008862	ENSMUSG00000027499	Pkia	AI415001|PKIalpha	protein kinase inhibitor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-5141542-3	chr18	5141443	5141643	+	767.9111330000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24188.0	NR_153824	102637682.0	Mm.451914	NR_153824		Gm26682	Gm38715	predicted gene, 26682	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-109621369-3	chr11	109621263	109621463	+	682.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9974.0	NM_145940	52639.0	Mm.35817	NM_145940	ENSMUSG00000041895	Wipi1	4930533H01Rik|AW411817|D11Ertd498e	WD repeat domain, phosphoinositide interacting 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-120847040-3	chr10	120846932	120847132	+	616.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177092, intron 4 of 6)	LTR41|LTR|ERVL	-10597.0	NR_038023	100504616.0	Mm.451174	NR_038023	ENSMUSG00000087480	Gm15910	-	predicted gene 15910	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-66981887-2	chr3	66981787	66981987	+	598.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302359)	promoter-TSS (NM_001302359)	-116.0	NM_001302357	20429.0	Mm.39093	NM_013665	ENSMUSG00000027833	Shox2	6330543G17Rik|OG12|Og12x|Prx3|SHOT	short stature homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-115555782-4	chr6	115555674	115555874	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199033, intron 4 of 11)	intron (NM_199033, intron 4 of 11)	11070.0	NM_199033	381802.0	Mm.291208	NM_199033	ENSMUSG00000042389	Tsen2	AU067695	tRNA splicing endonuclease subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-120365699-3	chr10	120365626	120365826	+	787.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010441, intron 4 of 4)	intron (NM_010441, intron 4 of 4)	-23797.0	NR_040626	320626.0	Mm.446091	NR_040626	ENSMUSG00000090191	9230105E05Rik	-	RIKEN cDNA 9230105E05 gene	ncRNA	0.527698426069576	0.19374904320835	0.353222932615891	0.776211899046448	0.314302106325816	0.194949544751962	0.35780756299011	0.472278961099586	-1.08830413525836	0.54651324031255	1
Merged-chr9-66706016-3	chr9	66705912	66706112	+	603.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7674.0	NM_178396	76459.0	Mm.277921	NM_178396	ENSMUSG00000032373	Car12	2310047E01Rik|AI314958|CA-XII|Ca12	carbonic anhydrase 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-35113484-2	chr9	35113384	35113584	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009178, intron 1 of 10)	intron (NM_009178, intron 1 of 10)	-3244.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-66106140-4	chr5	66106024	66106224	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127382, intron 2 of 7)	intron (NM_001127382, intron 2 of 7)	-7945.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	1.08596725436033	0.941102132390674	2.11217539274341	0.891439822017623	2.11702232561216	1.82977598440867	2.75990565605724	0.895371110225732	1.81493036976802	0.154239533867364	0.609540819282158
Merged-chr14-73445677-4	chr14	73445594	73445794	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60405.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127420793-4	chr10	127420707	127420907	+	965.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001168293)	promoter-TSS (NM_001168293)	-60.0	NM_027900	71750.0	Mm.29342	NM_027900	ENSMUSG00000025404	R3hdm2	1300003K24Rik|AU041262|mKIAA1002	R3H domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-43549497-4	chr13	43549313	43549513	+	926.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081059, intron 5 of 8)	intron (NM_001081059, intron 5 of 8)	10778.0	NM_001081059	76137.0	Mm.426290	NM_001081059	ENSMUSG00000021371	Mcur1	6230416A05Rik|AU015498|AV136929|AW554392|C88263|Ccdc90a	mitochondrial calcium uniporter regulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-69973146-2	chr8	69973046	69973246	+	583.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286450, intron 1 of 12)	intron (NM_001286450, intron 1 of 12)	1237.0	NM_001113346	234366.0	Mm.270044	NM_145596	ENSMUSG00000036180	Gatad2a	1110066C11Rik|BC031407|C80248	GATA zinc finger domain containing 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-83670159-1	chr8	83670059	83670259	+	909.0	f1_c57bl6.idr	TTS (NM_013641)	TTS (NM_013641)	3515.0	NM_013641	19216.0	Mm.213000	NM_013641	ENSMUSG00000019464	Ptger1	EP1|Ptgerep1	prostaglandin E receptor 1 (subtype EP1)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-46600974-2	chr18	46600874	46601074	+	590.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010120, intron 2 of 2)	intron (NM_010120, intron 2 of 2)	3270.0	NM_010120	13664.0	Mm.262037	NM_010120	ENSMUSG00000057561	Eif1a	C76390|Ef1a|Eftu|Eif4c|eIF-1A|eIF-4C	eukaryotic translation initiation factor 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117712309-4	chr11	117712219	117712419	+	928.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198022, intron 3 of 21)	intron (NM_198022, intron 3 of 21)	58030.0	NM_198022	217351.0	Mm.40272	NM_198022	ENSMUSG00000025571	Tnrc6c	9930033H14Rik|mKIAA1582	trinucleotide repeat containing 6C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-15972277-2	chr7	15972177	15972377	+	652.833374	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081418, exon 14 of 14)	exon (NM_001081418, exon 14 of 14)	-4742.0	NM_153068	259300.0	Mm.138215	NM_153068	ENSMUSG00000074364	Ehd2	BC027084|C130052H20Rik	EH-domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114578644-2	chr11	114578544	114578744	+	646.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-89899.0	NM_023372	67671.0	Mm.238817	NM_023372	ENSMUSG00000057322	Rpl38	0610025G13Rik|Rbt|Ts|Tss	ribosomal protein L38	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153338918-3	chr2	153338818	153339018	+	929.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6892.0	NR_040318	72326.0	Mm.400102	NR_040318	ENSMUSG00000073236	2500004C02Rik	-	RIKEN cDNA 2500004C02 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-55446909-2	chr13	55446809	55447009	+	955.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038018, intron 1 of 15)	intron (NM_001038018, intron 1 of 15)	1578.0	NM_001112711	26385.0	Mm.10193	NM_011938	ENSMUSG00000074886	Grk6	Gprk6	G protein-coupled receptor kinase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31183125-4	chr14	31183028	31183228	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001347583)	TTS (NM_001347583)	-14487.0	NM_138672	192187.0	Mm.220821	NM_138672	ENSMUSG00000042286	Stab1	FEEL-1|FELE-1|MFEEL-1|MS-1|STAB-1|mKIAA0246	stabilin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-112138775-4	chr10	112138668	112138868	+	998.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR46A2|LTR|ERVK	-24853.0	NM_001310675	353025.0	Mm.194428	NM_178278	ENSMUSG00000035694	Caps2	D630005B03Rik	calcyphosphine 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72022116-3	chr6	72022012	72022212	+	842.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_046180, intron 1 of 2)	Lx3_Mus|LINE|L1	20416.0	NR_046180	330350.0	Mm.246787	NR_046180	ENSMUSG00000108356	9130221F21Rik	9130221F21	RIKEN cDNA 9130221F21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5017029-4	chr19	5016929	5017129	+	944.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6977.0	NM_007854	13340.0	Mm.4930	NM_007854	ENSMUSG00000024891	Slc29a2	Der12|Ent2|Hnp36	solute carrier family 29 (nucleoside transporters), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-79343015-4	chr15	79342930	79343130	+	922.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3591.0	NM_001304830	17133.0	Mm.86646	NM_010755	ENSMUSG00000042622	Maff	-	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein F (avian)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-36029500-4	chr12	36029439	36029639	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025359, intron 1 of 5)	intron (NM_025359, intron 1 of 5)	12939.0	NM_025359	66109.0	Mm.254663	NM_025359	ENSMUSG00000020577	Tspan13	1100001I23Rik|NET-6|Tm4sf13	tetraspanin 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-35664200-1	chr15	35664100	35664300	+	698.0	f0_balb.idr	intron (NM_177151, intron 30 of 61)	intron (NM_177151, intron 30 of 61)	-3153.0	NR_030606	100124469.0		NR_030606	ENSMUSG00000077890	Mir875	Mirn875|mir-875|mmu-mir-875	microRNA 875	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-33017009-4	chr12	33016892	33017092	+	913.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER58B|DNA|hAT-Charlie	62806.0	NM_198710	19027.0	Mm.246304	NM_013635	ENSMUSG00000020570	Sypl	AI314763|AI604763|D12Ertd446e|PanI|Pphn|Sypl1	synaptophysin-like protein	protein-coding	2.48367936829506	3.74459000283055	2.31431614149226	2.51000162346849	2.60335430739226	2.69801038732247	2.33309417767101	1.91614450332198	-0.947964869846034	0.22973269194884	0.723446939108183
Merged-chr8-106820756-3	chr8	106820649	106820849	+	941.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173037, intron 17 of 17)	B3A|SINE|B2	-49493.0	NM_008217	15118.0	Mm.56986	NM_008217	ENSMUSG00000031910	Has3	-	hyaluronan synthase 3	protein-coding	4.83336253487259	5.67465428301457	4.31626774791607	5.23710793096377	2.69474240041384	2.95269726228437	2.65972114077646	1.60118880662993	-3.55923217561322	1.63098779341131e-10	3.29807722674419e-08
Merged-chr16-96128021-4	chr16	96127880	96128080	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008251)	promoter-TSS (NM_008251)	-255.0	NM_008251	15312.0	Mm.2756	NM_008251	ENSMUSG00000040681	Hmgn1	HMG-14|Hmg14	high mobility group nucleosomal binding domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-13867130-4	chr17	13867044	13867244	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151731, intron 22 of 33)	intron (NR_151731, intron 22 of 33)	-81229.0	NM_001122977	635895.0	Mm.388844	NM_001122977	ENSMUSG00000067941	Gm7168	EG635895	predicted gene 7168	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-119288636-4	chr2	119288544	119288744	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172269)	promoter-TSS (NM_172269)	-98.0	NM_172269	228545.0	Mm.294761	NM_172269	ENSMUSG00000034216	Vps18	9930024E13Rik	VPS18 CORVET/HOPS core subunit	protein-coding	6.72710315949605	6.90663164493024	7.29680518077356	7.24643511586771	7.04364883550561	7.30162865945024	7.41311351470058	7.22209858222486	0.196122839871693	0.272464359223911	0.775631299106725
Merged-chr10-94587405-3	chr10	94587329	94587529	+	839.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172051, exon 4 of 4)	3' UTR (NM_172051, exon 4 of 4)	-1230.0	NR_106070	102466817.0		NR_106070	ENSMUSG00000098544	Mir7211	Gm27536|mmu-mir-7211	microRNA 7211	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-48011874-3	chr8	48011774	48011974	+	932.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-21323.0	NM_133791	52357.0	Mm.235074	NM_133791	ENSMUSG00000031563	Wwc2	5330431C14Rik|AU022508|C85457|D8Ertd594e	WW, C2 and coiled-coil domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117403366-2	chr8	117403266	117403466	+	599.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028941, intron 3 of 20)	RMER30|DNA|hAT-Charlie	-49657.0	NR_106045	102466801.0		NR_106045	ENSMUSG00000099062	Mir7077	Gm27774|mmu-mir-7077	microRNA 7077	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-25861101-2	chr14	25861001	25861201	+	878.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013469, intron 1 of 14)	intron (NM_013469, intron 1 of 14)	18946.0	NM_013469	11744.0	Mm.294083	NM_013469	ENSMUSG00000021866	Anxa11	A830099O17Rik|Anx11	annexin A11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-63389482-3	chr4	63389383	63389583	+	895.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045514, intron 4 of 21)	intron (NM_001045514, intron 4 of 21)	8757.0	NM_001305432	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-11463078-2	chr8	11462978	11463178	+	790.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_011227, intron 1 of 1)	B1_Mus1|SINE|Alu	-14851.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-40391599-3	chr9	40391518	40391718	+	661.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357617, intron 2 of 20)	intron (NM_001357617, intron 2 of 20)	-15201.0	NM_001357621	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-105879503-1	chr3	105879403	105879603	+	639.0	f1_balb.idr	intron (NM_027025, intron 1 of 6)	RMER10B|LTR|ERVL	8645.0	NM_001174169	69296.0	Mm.235024	NM_027025	ENSMUSG00000000562	Tmigd3	1700001d09rik|4930578J19Rik|Tg(H2-K-CALR*)del52Shmd	transmembrane and immunoglobulin domain containing 3	protein-coding	0.829742780745003	1.66844708035021	1.46274372110341	1.67193001629439	0.833731317755125	2.21996578023654	0.875691327785001	1.6819113860972	0.317303295348142	0.815771769826248	0.998431161219273
Merged-chr9-120069840-2	chr9	120069740	120069940	+	551.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1544.0	NM_009987	13051.0	Mm.44065	NM_009987	ENSMUSG00000052336	Cx3cr1	-	chemokine (C-X3-C motif) receptor 1	protein-coding	0.139668829156265	-0.470897330298664	-0.474559271878161	-0.477377027456468	-0.339614740650072	-0.118408613646351	-0.473752549020738	-0.476885247750005	-0.595157968408829	0.818987230767485	1
Merged-chr1-120033251-4	chr1	120033157	120033357	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001012322, intron 4 of 13)	intron (NM_001012322, intron 4 of 13)	26277.0	NM_001012322	319229.0	Mm.189223	NM_001012322	ENSMUSG00000026387	Sctr	6530402O03Rik	secretin receptor	protein-coding	4.7605358864731	4.54954723069701	3.92120074171227	3.94945603888096	4.57232423500056	4.08537076854927	3.40802459958102	4.45693506372868	-0.182551770925418	0.686891344614862	0.996533206832645
Merged-chr1-177681396-4	chr1	177681301	177681501	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38458.0	NR_037994	75589.0	Mm.86666	NR_037994	ENSMUSG00000101746	2310043L19Rik	-	RIKEN cDNA 2310043L19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-185203300-4	chr1	185203213	185203413	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163754)	promoter-TSS (NM_001163754)	-855.0	NM_001163754	98732.0	Mm.275841	NM_172649	ENSMUSG00000039318	Rab3gap2	1110059F07Rik|2010002H18Rik|5830469C09|AI851069|AW743433|RAB3-GAP150|mKIAA0839	RAB3 GTPase activating protein subunit 2	protein-coding	4.63656272790848	4.18460263428072	4.43509925809105	5.67946458693273	4.9710654223053	4.4954827501829	5.38657150343291	5.30266405000967	0.251122674342333	0.52910086893834	0.949464880269839
Merged-chr5-142702109-2	chr5	142702009	142702209	+	842.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146257)	promoter-TSS (NM_146257)	8.0	NM_146257	243328.0	Mm.125942	NM_146257	ENSMUSG00000050822	Slc29a4	ENT4|mPMAT	solute carrier family 29 (nucleoside transporters), member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56160638-2	chr17	56160538	56160738	+	718.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA8|LINE|L1	-1853.0	NM_025566	66443.0	Mm.2312	NM_025566	ENSMUSG00000044469	Tnfaip8l1	2600017J23Rik|TIPE1	tumor necrosis factor, alpha-induced protein 8-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-30408888-4	chr10	30408787	30408987	+	899.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	191813.0	NM_028604	73681.0	Mm.294503	NM_028604	ENSMUSG00000019792	Trmt11	2410075D05Rik|3110045I18Rik|AW213713	tRNA methyltransferase 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-130900813-2	chr7	130900713	130900913	+	952.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133942, intron 5 of 9)	intron (NM_133942, intron 5 of 9)	-7455.0	NR_106028	102466219.0		NR_106028	ENSMUSG00000104914	Mir7061	mmu-mir-7061	microRNA 7061	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-65174708-3	chr16	65174599	65174799	+	732.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68915.0	NM_008310	15557.0	Mm.5040	NM_008310	ENSMUSG00000050783	Htr1f	Htr1eb	5-hydroxytryptamine (serotonin) receptor 1F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-24860496-4	chr16	24860405	24860605	+	937.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 9 of 12)	intron (NM_178665, intron 9 of 12)	138650.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100527998-4	chr11	100527889	100528089	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199296)	promoter-TSS (NM_001199296)	11.0	NM_134037	104112.0	Mm.282039	NM_134037	ENSMUSG00000020917	Acly	A730098H14Rik|AW538652	ATP citrate lyase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-22657077-4	chr16	22656971	22657171	+	996.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_138650, exon 1 of 25)	5' UTR (NM_138650, exon 1 of 25)	160.0	NM_138650	110197.0	Mm.194986	NM_138650	ENSMUSG00000022861	Dgkg	2900055E17Rik|90kDa|AI854428|Dagk3|E430001K23Rik|mKIAA4131	diacylglycerol kinase, gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-29496966-4	chr19	29496919	29497119	+	786.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	24968.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-74305828-2	chr1	74305728	74305928	+	648.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039509, intron 2 of 9)	B1_Mur1|SINE|Alu	-1492.0	NM_027154	69660.0	Mm.261182	NM_027154	ENSMUSG00000006301	Tmbim1	2310061B02Rik|AA960455|AU024746|C78899|RECS1|Tmbib1|mKIAA4161	transmembrane BAX inhibitor motif containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-108054562-2	chr9	108054510	108054710	+	665.333374	f1_balb.idr|f1_c57bl6.idr	exon (NM_177275, exon 1 of 1)	exon (NM_177275, exon 1 of 1)	1451.0	NM_177275	320844.0	Mm.449806	NM_177275	ENSMUSG00000032593	Amigo3	E430002N15Rik|ali3|mKIAA1851	adhesion molecule with Ig like domain 3	protein-coding	0.114053614985843	-0.338489159394896	-0.342641815647888	-0.345841020629306	-0.350355021262825	0.27820004597808	-0.341726507895523	-0.180849833847365	0.81734121073663	0.743737362506257	1
Merged-chr2-31052631-4	chr2	31052531	31052731	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_019406)	TTS (NM_019406)	43869.0	NM_001177650	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34109219-1	chr17	34109119	34109319	+	607.0	f1_balb.idr	Intergenic	Intergenic	10681.0	NR_037970	14312.0	Mm.3444	NM_010238	ENSMUSG00000024335	Brd2	AW228947|D17H6S113E|Frg-1|Fsrg-1|Fsrg1|Nat|Ring3|Rnf3|mKIAA4005	bromodomain containing 2	protein-coding	0.745266124551802	0.487751766484183	1.07609669823544	0.647032532283906	1.22897174465995	0.489696178049548	1.08795495100456	0.473545968603198	0.585786078629783	0.725985511496569	1
Merged-chr6-29542411-2	chr6	29542311	29542511	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001311083)	TTS (NM_001311083)	13129.0	NM_001252382	27056.0	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-16170586-4	chr2	16170476	16170676	+	961.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310455, intron 35 of 38)	intron (NM_001310455, intron 35 of 38)	-185728.0	NM_026162	67448.0	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-111798184-4	chr13	111798117	111798317	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011945, intron 1 of 19)	intron (NM_011945, intron 1 of 19)	10776.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-29887431-2	chr11	29887331	29887531	+	682.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146016, intron 5 of 41)	L1_Mus2|LINE|L1	-61763.0	NM_176829	216622.0	Mm.443260	NM_176829	ENSMUSG00000078157	4931440F15Rik	Fem1ab	RIKEN cDNA 4931440F15 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-94837352-2	chr8	94837240	94837440	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134141, intron 1 of 8)	RSINE1|SINE|B4	1000.0	NM_134141	109006.0	Mm.27582	NM_134141	ENSMUSG00000031781	Ciapin1	2810413N20Rik|AA617265|AU021794|anamorsin	cytokine induced apoptosis inhibitor 1	protein-coding	0.0397084646414617	-0.315085384735933	-0.319254610061173	-0.322465708641391	0.385957277564944	-0.314144449540969	-0.140898417457284	-0.321905086164103	1.4682074489183	0.556361782808431	1
Merged-chr9-21309221-3	chr9	21309159	21309359	+	763.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110300, intron 3 of 10)	intron (NM_001110300, intron 3 of 10)	3074.0	NM_001110300	11768.0	Mm.22239	NM_009678	ENSMUSG00000003309	Ap1m2	D9Ertd818e|[m]1B|mu1B	adaptor protein complex AP-1, mu 2 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81072978-2	chr15	81072878	81073078	+	658.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001082536, intron 2 of 13)	B3|SINE|B2	32069.0	NM_153049	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128272632-1	chr10	128272532	128272732	+	570.0	f1_c57bl6.idr	intron (NM_019963, intron 1 of 23)	Lx5c|LINE|L1	2134.0	NM_019963	20847.0	Mm.293120	NM_019963	ENSMUSG00000040033	Stat2	1600010G07Rik|AW496480	signal transducer and activator of transcription 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-112745007-2	chr12	112744907	112745107	+	626.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001024602, exon 19 of 19)	3' UTR (NM_001024602, exon 19 of 19)	11685.0	NR_105905	102466989.0		NR_105905	ENSMUSG00000099165	Mir6940	Gm27655|mmu-mir-6940	microRNA 6940	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-40818664-3	chr6	40818571	40818771	+	906.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	68823.0	NM_139296	194357.0	Mm.207087	NM_139296	ENSMUSG00000029885	Moxd2	Dbhl1	monooxygenase, DBH-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69586074-4	chr11	69585950	69586150	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127233, intron 1 of 10)	intron (NM_001127233, intron 1 of 10)	5691.0	NM_001127233	22059.0	Mm.222	NM_011640	ENSMUSG00000059552	Trp53	Tp53|bbl|bfy|bhy|p44|p53	transformation related protein 53	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-108694280-4	chr9	108694214	108694414	+	940.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008924, intron 1 of 10)	L1M4|LINE|L1	2171.0	NM_008924	19087.0	Mm.253102	NM_008924	ENSMUSG00000032601	Prkar2a	1110061A24Rik|AI317181|AI836829|RII(alpha)	protein kinase, cAMP dependent regulatory, type II alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-50785524-4	chr14	50785403	50785603	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177625)	promoter-TSS (NM_177625)	17.0	NM_177625	219022.0	Mm.276362	NM_177625	ENSMUSG00000006288	Ttc5	-	tetratricopeptide repeat domain 5	protein-coding	4.93375230114379	4.13013056379812	4.84508992643023	3.56419346309577	3.10616981241675	4.15999995759006	4.87818537670533	4.15459797842407	-0.353969737404662	0.480188096695405	0.928595475837891
Merged-chr16-91373590-1	chr16	91373490	91373690	+	741.333313	f0_balb.idr	intron (NM_001347258, intron 1 of 7)	intron (NM_001347258, intron 1 of 7)	807.0	NM_001110498	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-48492098-4	chr9	48491993	48492193	+	976.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144948, intron 3 of 4)	intron (NM_144948, intron 3 of 4)	3237.0	NM_001326355	67010.0	Mm.76911	NM_144948	ENSMUSG00000042396	Rbm7	1200007M24Rik|1500011D06Rik|AU041934|AW554393	RNA binding motif protein 7	protein-coding	1.57811428627229	1.05124934251631	1.01480226157759	1.49116369083437	1.88549526039519	2.88782959308493	3.26654902751069	1.50030378320166	3.19547705255166	0.00390634162848165	0.0550797047699106
Merged-chr3-96102216-4	chr3	96102140	96102340	+	919.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2287.0	NM_001025613	229603.0	Mm.272336	NM_001025613	ENSMUSG00000038495	Otud7b	2900060B22Rik|4930463P07Rik|AI462125|CEZANNE|Trabid2|Za20d1	OTU domain containing 7B	protein-coding	2.80563645733203	2.78449099049263	3.84075706753306	2.73826746009138	3.16635968353014	2.80544611163754	3.63548600273072	2.97462613442893	0.0795510955162399	0.902449033168316	0.998431161219273
Merged-chr19-25188123-2	chr19	25188023	25188223	+	873.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_028785, intron 43 of 47)	intron (NM_028785, intron 43 of 47)	-48852.0	NM_181404	107351.0	Mm.260722	NM_181404	ENSMUSG00000032702	Kank1	A930031B09Rik|AU015049|AW121052|Ankrd15|D330024H06Rik|mKIAA0172	KN motif and ankyrin repeat domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-107967056-4	chr5	107966948	107967148	+	865.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026062, intron 1 of 4)	intron (NM_026062, intron 1 of 4)	20029.0	NM_026062	67266.0	Mm.277897	NM_026062	ENSMUSG00000029270	Fam69a	2900024C23Rik|AI315274	family with sequence similarity 69, member A	protein-coding	1.46419650679808	2.13456273369678	2.30508986147681	2.51521923364433	2.04097367949562	2.51039425443069	1.93481610808507	1.87899140747109	-0.124244548687858	0.89284761775086	0.998431161219273
Merged-chr17-56762898-2	chr17	56762798	56762998	+	635.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1853.0	NM_001360405	224907.0	Mm.293973	NM_144858	ENSMUSG00000007603	Dus3l	AI662135|AW557805	dihydrouridine synthase 3-like (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-64343694-2	chr2	64343594	64343794	+	550.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4_|SINE|ID	-245656.0	NM_001267847	60344.0	Mm.130769	NM_021716	ENSMUSG00000075324	Fign	fi|fidget	fidgetin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-61413410-4	chr3	61413278	61413478	+	817.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48871.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-121885668-4	chr2	121885559	121885759	+	916.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205371, intron 1 of 9)	(A)n|Simple_repeat|Simple_repeat	17954.0	NM_001205371	319996.0	Mm.292109	NM_177054	ENSMUSG00000060227	Casc4	D130060C09Rik|VGFG2573	cancer susceptibility candidate 4	protein-coding	1.68672104381361	1.32254021395936	0.757851136957535	0.937036893363854	1.55834701834843	1.33366782987801	0.760616293869152	0.941043564031937	-0.17399379807212	0.90222885747537	0.998431161219273
Merged-chr11-50931611-4	chr11	50931463	50931663	+	962.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013744)	promoter-TSS (NM_013744)	72.0	NM_013744	27274.0	Mm.74670	NM_013744	ENSMUSG00000020335	Zfp354b	Kid2|Tcf17l1|Znf354b	zinc finger protein 354B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64093501-3	chr5	64093437	64093637	+	964.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025700, intron 1 of 13)	intron (NM_025700, intron 1 of 13)	598.0	NM_001356964	66681.0	Mm.2325	NM_025700	ENSMUSG00000029171	Pgm1	3230402E02Rik|Pgm-1|Pgm2	phosphoglucomutase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-31347314-4	chr13	31347208	31347408	+	861.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-106222.0	NR_045957	73924.0	Mm.417825	NR_045957	ENSMUSG00000087460	4930401O12Rik	-	RIKEN cDNA 4930401O12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-29491927-2	chr19	29491827	29492027	+	789.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30060.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-47020177-3	chr11	47020075	47020275	+	920.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011891, intron 6 of 7)	intron (NM_011891, intron 6 of 7)	209376.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	0.313166093889517	0.198273275020393	0.613308736715852	0.468578748995415	0.317113130654713	0.199439489972392	0.622335472939657	0.472929660443395	0.0370632790695433	0.983469650017862	1
Merged-chr18-18362736-2	chr18	18362636	18362836	+	725.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-781746.0	NR_045374	75162.0	Mm.60874	NR_045374		4930545E07Rik	-	RIKEN cDNA 4930545E07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-59220782-2	chr12	59220682	59220882	+	694.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-1299.0	NM_001033156	70611.0	Mm.311026	NM_001033156	ENSMUSG00000035329	Fbxo33	5730501N20Rik|AI642135	F-box protein 33	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-40584820-4	chr8	40584727	40584927	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040699, intron 6 of 13)	intron (NM_001040699, intron 6 of 13)	49965.0	NM_001040699	54384.0	Mm.294871	NM_019433	ENSMUSG00000039431	Mtmr7	-	myotubularin related protein 7	protein-coding	5.01518983370861	5.58874921993004	5.45926926049737	5.18819578993745	5.07960864954697	4.38640373200276	4.84287158706594	4.66065912923029	-0.650574901822899	0.0441295438436289	0.301856182294133
Merged-chr7-63755009-3	chr7	63754929	63755129	+	761.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130880, intron 13 of 13)	intron (NM_130880, intron 13 of 13)	-161828.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-5186291-4	chr5	5186218	5186418	+	994.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011074, intron 5 of 14)	intron (NM_011074, intron 5 of 14)	79750.0	NM_001310448	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	4.19900037682746	4.18828123580113	4.17317838093743	3.1068541866591	3.71799947465568	4.21730017336333	4.41215161360665	3.52864369329095	0.031829713352668	0.948132755719802	0.998431161219273
Merged-chr17-72604732-1	chr17	72604632	72604832	+	705.0	f0_balb.idr	promoter-TSS (NM_007439)	promoter-TSS (NM_007439)	-425.0	NM_007439	11682.0	Mm.311854	NM_007439	ENSMUSG00000055471	Alk	CD246|Tcrz	anaplastic lymphoma kinase	protein-coding	-1.58994551673671	-1.55912852307891	-1.56844783632235	-1.57610299769523	-1.18549093183599	-1.55710898902261	-1.56633814807757	-1.57473272746952	1.78703309985663	0.610309988231842	1
Merged-chr6-31111068-3	chr6	31110983	31111183	+	853.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110471, intron 3 of 3)	intron (NR_110471, intron 3 of 3)	-47990.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-108915610-3	chr8	108915447	108915647	+	816.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007496, intron 5 of 9)	intron (NM_007496, intron 5 of 9)	-21313.0	NR_037295	100526511.0		NR_037295	ENSMUSG00000093241	Mir3108	mir-3108|mmu-mir-3108	microRNA 3108	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-145108742-2	chr3	145108642	145108842	+	645.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9636.0	NM_178697	229933.0	Mm.331420	NM_178697	ENSMUSG00000036960	Clca2	4732440A06|AI586120|Clca5	chloride channel accessory 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-112581647-1	chr8	112581547	112581747	+	572.0	f1_balb.idr	intron (NM_130457, intron 1 of 23)	7SK|RNA|RNA	11604.0	NM_130457	170571.0	Mm.209232	NM_130457	ENSMUSG00000031772	Cntnap4	Caspr4|E130114F09Rik	contactin associated protein-like 4	protein-coding	0.761782024538781	0.632213793189807	0.984224206995772	0.612883426592892	1.23764346182187	1.18459544182125	0.82554770164824	1.58107550578105	2.51414303006985	0.0990278437593305	0.489616512125459
Merged-chr4-35034850-3	chr4	35034755	35034955	+	808.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178061, intron 2 of 3)	intron (NM_178061, intron 2 of 3)	-117200.0	NM_199157	387510.0	Mm.386929	NM_199157	ENSMUSG00000042993	Ifnk	-	interferon kappa	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-160157523-3	chr1	160157523	160157723	+	840.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4048.0	NM_177839	329278.0	Mm.90140	NM_177839	ENSMUSG00000026725	Tnn	TN-W|Tnw|tenascin-W	tenascin N	protein-coding	0.631038676051821	0.734226938168881	0.70259511710697	0.676837392273935	2.65076644737317	2.77347426706913	2.1673602141108	0.68142917727504	5.80033402664345	7.30081489117219e-05	0.00240646090835945
Merged-chr1-37457782-1	chr1	37457682	37457882	+	666.0	f0_balb.idr	intron (NM_173870, intron 8 of 15)	intron (NM_173870, intron 8 of 15)	27643.0	NM_001356528	67387.0	Mm.27404	NM_026123	ENSMUSG00000026111	Unc50	1110002A21Rik|GMH1|UNCL|URP	unc-50 homolog (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31131787-2	chr14	31131687	31131887	+	981.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2857.0	NM_001308464	66487.0	Mm.379116	NM_001308091	ENSMUSG00000058351	Smim4	2010107H07Rik|Gm41122	small integral membrane protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-77922111-2	chr10	77922011	77922211	+	549.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_138301, intron 24 of 33)	intron (NM_138301, intron 24 of 33)	-19575.0	NM_145152	237387.0	Mm.133301	NM_145152	ENSMUSG00000051652	Lrrc3	1300011L04Rik|C21orf102	leucine rich repeat containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-155531095-2	chr1	155530995	155531195	+	803.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR101_Mam|LTR|ERVL	-3984.0	NR_132128	433367.0	Mm.359304	NR_132128	ENSMUSG00000073535	Gm5532	EG433367	predicted gene 5532	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70704698-3	chr8	70704601	70704801	+	633.966675	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6962.0	NM_001286944	16478.0	Mm.419851	NM_010592	ENSMUSG00000071076	Jund	Jund1	jun D proto-oncogene	protein-coding	1.76561748152749	2.82167282742431	2.51303132842866	3.10782846739518	2.77658772935878	1.76062390254196	1.92507570321382	2.83798319605561	-0.440070894597256	0.606063590512476	0.974576632476413
Merged-chr8-106687669-2	chr8	106687576	106687776	+	591.5	f0_balb.idr|f1_balb.idr	intron (NM_173037, intron 1 of 17)	intron (NM_173037, intron 1 of 17)	4608.0	NM_173037	272538.0	Mm.87151	NM_173037	ENSMUSG00000041949	Tango6	AW413431|E330010G16|Tmco7	transport and golgi organization 6	protein-coding	2.15295891925688	1.92733544365742	1.38997036991588	2.9852148227966	2.56724133014005	2.29555884010654	3.02442320373733	2.40226733736575	0.715145554804819	0.421163795474366	0.900322118218157
Merged-chr10-20507276-4	chr10	20507172	20507372	+	931.9833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013875, intron 2 of 12)	intron (NM_013875, intron 2 of 12)	41056.0	NM_001347366	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-35558313-3	chr9	35558228	35558428	+	899.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023292)	promoter-TSS (NM_023292)	142.0	NM_013932	30959.0	Mm.291723	NM_013932	ENSMUSG00000032101	Ddx25	AW047046|GRTH	DEAD (Asp-Glu-Ala-Asp) box polypeptide 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-5825038-4	chr10	5824938	5825138	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_019958)	TTS (NM_019958)	-1095.0	NM_175374	108853.0	Mm.55082	NM_175374	ENSMUSG00000019774	Mtrf1l	9130004K12Rik	mitochondrial translational release factor 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-128884122-3	chr4	128884013	128884213	+	686.133301	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178110)	promoter-TSS (NM_178110)	-27.0	NM_178110	67525.0	Mm.30653	NM_178110	ENSMUSG00000041000	Trim62	6330414G21Rik|AI450348|Dear1	tripartite motif-containing 62	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-41373932-4	chr8	41373842	41374042	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019734, intron 1 of 13)	intron (NM_019734, intron 1 of 13)	755.0	NM_019734	11886.0	Mm.22547	NM_019734	ENSMUSG00000031591	Asah1	2310081N20Rik|AC|Asah	N-acylsphingosine amidohydrolase 1	protein-coding	4.37202918665403	4.67094383569562	4.38752901781964	4.22266855804286	3.88658713345652	4.20746971604694	3.59976621192738	3.73945028666235	-0.734489298267318	0.0812438660923495	0.435621007578746
Merged-chr18-63484923-4	chr18	63484818	63485018	+	887.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-97735.0	NM_001039485	667742.0	Mm.158720	NM_172629	ENSMUSG00000041482	Piezo2	5930434P17|9030411M15Rik|9430028L06Rik|Fam38b|Fam38b2	piezo-type mechanosensitive ion channel component 2	protein-coding	-1.84297643846673	-1.8130099360596	-1.82207205372894	-1.6869274651563	-1.84087284540582	-1.81104613735712	-1.82002058892457	-1.6855950118199	0.037684011990387	0.991491645451152	1
Merged-chr8-22945079-4	chr8	22945003	22945203	+	839.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29733.0	NM_001110783	11733.0	Mm.334444	NM_031158	ENSMUSG00000031543	Ank1	Ank-1|nb|pale	ankyrin 1, erythroid	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-62846921-4	chr5	62846836	62847036	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170705, intron 6 of 8)	intron (NM_001170705, intron 6 of 8)	33113.0	NM_001170705	100322896.0	Mm.479821	NM_001170705	ENSMUSG00000090326	Dthd1	Gm17384	death domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-94413213-4	chr11	94413123	94413323	+	974.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009783, intron 33 of 35)	intron (NM_009783, intron 33 of 35)	-20247.0	NM_029600	76408.0	Mm.23942	NM_029600	ENSMUSG00000020865	Abcc3	1700019L09Rik|ABC31|MLP2|MOAT-D|MRP3	ATP-binding cassette, sub-family C (CFTR/MRP), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-18075-1	chr4	17975	18175	+	809.0	f1_c57bl6.idr	Intergenic	Intergenic	-3154008.0	NM_001167534	100312470.0	Mm.480297	NM_001167534	ENSMUSG00000115072	Vmn1r2	Gm11776	vomeronasal 1 receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-9837134-4	chr19	9837033	9837233	+	963.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPEY4_LTR|LTR|ERVK	62400.0	NM_016692	16319.0	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-19693052-8	chr10	19692906	19693106	+	964.3312380000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19581.0	NM_172786	237313.0	Mm.234667	NM_172786	ENSMUSG00000020007	Il20ra	E230031K19	interleukin 20 receptor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-73263634-1	chr13	73263534	73263734	+	571.0	f0_balb.idr	intron (NM_018885, intron 1 of 5)	intron (NM_018885, intron 1 of 5)	3137.0	NM_018885	50916.0	Mm.103784	NM_018885	ENSMUSG00000021604	Irx4	-	Iroquois homeobox 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-79132339-4	chr12	79132248	79132448	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009705, intron 2 of 7)	intron (NM_009705, intron 2 of 7)	1560.0	NM_009705	11847.0	Mm.3506	NM_009705	ENSMUSG00000021125	Arg2	AII|AU022422	arginase type II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-97228843-4	chr3	97228738	97228938	+	809.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1474.0	NM_029933	77578.0	Mm.226175	NM_029933	ENSMUSG00000038256	Bcl9	2610202E01Rik|8030475K17Rik|A330041G23Rik|Gm130	B cell CLL/lymphoma 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32646556-1	chr2	32646456	32646656	+	696.0	f0_balb.idr	promoter-TSS (NM_007932)	promoter-TSS (NM_007932)	-39.0	NM_007932	13805.0	Mm.225297	NM_007932	ENSMUSG00000026814	Eng	AI528660|AI662476|CD105|Endo|S-endoglin	endoglin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-90268456-2	chr3	90268356	90268556	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_201407, exon 3 of 28)	exon (NM_201407, exon 3 of 28)	-1693.0	NR_105979	102465612.0		NR_105979	ENSMUSG00000099199	Mir7012	Gm27370|mmu-mir-7012	microRNA 7012	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-35495048-4	chr8	35494917	35495117	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026067, intron 1 of 6)	CpG	516.0	NM_026067	67276.0	Mm.207534	NM_026067	ENSMUSG00000031527	Eri1	3'hexo|3110010F15Rik|Thex1|eri-1	exoribonuclease 1	protein-coding	4.25727404025338	4.54060524768544	4.09265447255513	3.98375688537209	3.75996504980769	3.55482858691839	3.53134007330163	3.22014665878315	-0.987529565701373	0.0329862830188942	0.254024020321369
Merged-chr15-98569693-1	chr15	98569593	98569793	+	542.0	f1_balb.idr	non-coding (NR_028442, exon 2 of 2)	non-coding (NR_028442, exon 2 of 2)	-1311.0	NM_001201322	73863.0	Mm.66894	NM_001201322	ENSMUSG00000022993	4930415O20Rik	-	RIKEN cDNA 4930415O20 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105565523-4	chr8	105565409	105565609	+	982.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013477, intron 1 of 7)	intron (NM_013477, intron 1 of 7)	555.0	NM_013477	11972.0	Mm.17708	NM_013477	ENSMUSG00000013160	Atp6v0d1	AI267038|Ac39|Atp6d|P39|VATX|Vma6	ATPase, H+ transporting, lysosomal V0 subunit D1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-30924156-3	chr5	30924032	30924232	+	826.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310524, intron 1 of 8)	intron (NM_001310524, intron 1 of 8)	2573.0	NM_001310524	16548.0	Mm.22451	NM_008439	ENSMUSG00000029162	Khk	-	ketohexokinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-105693483-2	chr5	105693383	105693583	+	751.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6486.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	-0.68063221780274	-0.670148869830999	-0.67358785862985	-0.248670345527081	-0.679979053862105	-0.669373100413457	-0.0913197828529291	-0.675775397699688	0.585979169389436	0.840982200956442	1
Merged-chr12-101959405-3	chr12	101959323	101959523	+	833.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1180.0	NM_001167914	110616.0	Mm.271914	NM_029705	ENSMUSG00000021189	Atxn3	2210008M02Rik|AI463012|AI647473|ATX3|MJD1|Mjd|Sca3|ataxin-3	ataxin 3	protein-coding	-0.437024327043903	-0.778225747096015	-0.780938595648234	-0.6298023841341	-0.429175127558738	-0.777161745436659	-0.78034169315615	-0.782657249337519	-0.421535436999113	0.882269584849466	1
Merged-chr15-89127013-2	chr15	89126913	89127113	+	821.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_028448, intron 5 of 17)	intron (NR_028448, intron 5 of 17)	1687.0	NR_028448	170787.0	Mm.203954	NM_199198	ENSMUSG00000062906	Hdac10	AW548891|Hd10	histone deacetylase 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-67229733-2	chr7	67229633	67229833	+	754.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7117.0	NM_001191051	75099.0	Mm.121691	NM_175215	ENSMUSG00000043831	Lysmd4	4930506D23Rik	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-33813506-4	chr14	33813409	33813609	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2226.0	NR_131113	218902.0	Mm.107791	NR_131113	ENSMUSG00000115751	4930503F20Rik	4930453C15	RIKEN cDNA 4930503F20 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-142387945-4	chr7	142387839	142388039	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009983)	promoter-TSS (NM_009983)	-69.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-63933230-3	chr9	63933123	63933323	+	806.366699	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	88836.0	NM_008542	17130.0	Mm.325757	NM_008542	ENSMUSG00000036867	Smad6	Madh6|b2b390Clo	SMAD family member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46613352-2	chr19	46613255	46613455	+	760.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177812, intron 2 of 4)	intron (NM_001177812, intron 2 of 4)	-10046.0	NM_001177813	226178.0	Mm.329895	NM_146099	ENSMUSG00000047731	Wbp1l	D19Wsu162e|Opal1	WW domain binding protein 1 like	protein-coding	0.515319846478053	0.263991849275634	0.437385932056811	0.980079066762384	0.394040955570153	0.265517205881111	0.258710787714911	0.8992856415055	-0.551112939862717	0.762999136667656	1
Merged-chr18-12862558-3	chr18	12862487	12862687	+	947.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001252493, exon 1 of 15)	5' UTR (NM_001252493, exon 1 of 15)	126.0	NM_001252493	64291.0	Mm.259470	NM_020573	ENSMUSG00000044252	Osbpl1a	G430090F17Rik|Gm753|ORP-1|Osbpl1b	oxysterol binding protein-like 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91206800-3	chr2	91206695	91206895	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007387, exon 7 of 11)	exon (NM_007387, exon 7 of 11)	3883.0	NM_007387	11432.0	Mm.45570	NM_007387	ENSMUSG00000002103	Acp2	Acp-2|LAP	acid phosphatase 2, lysosomal	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-32572327-4	chr4	32572216	32572416	+	978.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_026843)	promoter-TSS (NR_026843)	-654.0	NR_026843	414068.0	Mm.389550	NR_026843	ENSMUSG00000086150	Bach2os	-	BTB and CNC homology 2, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90502250-2	chr2	90502150	90502350	+	785.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	-23076.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44501913-3	chr7	44501829	44502029	+	677.733337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_028169)	TTS (NM_028169)	5341.0	NM_028169	75538.0	Mm.258841	NM_028169	ENSMUSG00000051113	Fam71e1	0610007G24Rik|1700021N13Rik|1700021P22Rik|GARI-L5	family with sequence similarity 71, member E1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-181918667-4	chr2	181918566	181918766	+	889.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54306.0	NM_025901	67005.0	Mm.271986	NM_025901	ENSMUSG00000038628	Polr3k	12.3kDa|1500004O14Rik|AI196849|AU014893|C11|RPC10|RPC11	polymerase (RNA) III (DNA directed) polypeptide K	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-38960460-4	chr13	38960328	38960528	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_131019)	promoter-TSS (NR_131019)	109.0	NM_001170430	108652.0	Mm.255506	NM_134060	ENSMUSG00000021432	Slc35b3	4921526O06Rik|AI428480|CGI-19|PABST2|PAPST2	solute carrier family 35, member B3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28707461-4	chr17	28707346	28707546	+	905.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168514, intron 2 of 12)	intron (NM_001168514, intron 2 of 12)	14878.0	NM_001357724	26416.0	Mm.311337	NM_011951	ENSMUSG00000053436	Mapk14	CSBP2|Crk1|Csbp1|Mxi2|PRKM14|PRKM15|p38|p38-alpha|p38MAPK|p38a|p38alpha	mitogen-activated protein kinase 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-8485621-2	chr6	8485521	8485721	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23540.0	NR_040452	320312.0	Mm.374890	NR_040452	ENSMUSG00000087305	A430035B10Rik	2810488G03Rik	RIKEN cDNA A430035B10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-103832120-4	chr2	103832024	103832224	+	915.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16_Mm|LTR|ERVK	-21502.0	NR_040514	78031.0	Mm.243867	NR_040514	ENSMUSG00000086687	4930547E08Rik	-	RIKEN cDNA 4930547E08 gene	ncRNA	-0.0281841600143838	0.357017147617109	-0.0160843800731575	-0.0206232129441074	-0.0270572758370912	0.634306420330157	-0.0147889327372683	0.638222914385193	2.20147057039647	0.333828822969829	1
Merged-chr2-163676967-4	chr2	163676865	163677065	+	931.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039390, intron 2 of 4)	intron (NM_001039390, intron 2 of 4)	-17072.0	NM_011106	18769.0	Mm.10091	NM_011106	ENSMUSG00000035268	Pkig	PKIgamma	protein kinase inhibitor, gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-142344895-3	chr7	142344791	142344991	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177265, intron 3 of 3)	L1MD|LINE|L1	27368.0	NM_177265	320802.0	Mm.154486	NM_177265	ENSMUSG00000045777	Ifitm10	6330512M04Rik|AI848576|DSPA3	interferon induced transmembrane protein 10	protein-coding	3.46489557609817	3.08938553765789	3.29413324965325	3.26575933295891	2.84061181855701	1.41154903012378	1.36067821909245	1.31447048516942	-2.58066169932989	0.00414587598324532	0.0577949884356824
Merged-chr11-86760479-2	chr11	86760379	86760579	+	673.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-2912.0	NM_001356393	67300.0	Mm.254588	NM_001003908	ENSMUSG00000047126	Cltc	3110065L21Rik|CHC|R74732	clathrin, heavy polypeptide (Hc)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-116088071-4	chr9	116087979	116088179	+	999.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009371, exon 8 of 8)	3' UTR (NM_009371, exon 8 of 8)	87284.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153496554-4	chr2	153496415	153496615	+	987.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001134300, intron 1 of 10)	intron (NM_001134300, intron 1 of 10)	33456.0	NM_001134300	329540.0	Mm.50600	NM_001001986	ENSMUSG00000061411	Nol4l	4931410H15|8430427H17Rik|AI429157|Gm1636	nucleolar protein 4-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65101890-2	chr9	65101790	65101990	+	966.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290315, intron 1 of 19)	CpG	404.0	NM_001290315	56741.0	Mm.209041	NM_020043	ENSMUSG00000032816	Igdcc4	DDM36|Nope	immunoglobulin superfamily, DCC subclass, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89285429-4	chr3	89285349	89285549	+	803.424988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4498.0	NM_001162425	13636.0	Mm.15675	NM_010107	ENSMUSG00000027954	Efna1	AI325262|B61|Efl1|Epl1|Eplg1|Lerk1	ephrin A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-17250091-1	chr3	17249991	17250191	+	587.0	f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	432997.0	NR_153388	102632048.0	Mm.417635	NR_153388		Gm30223	-	predicted gene, 30223	ncRNA	-0.323140490987106	-0.953303666062313	-0.964060045782848	-0.798827172077807	-0.969399877488293	-0.950662104056624	-0.962733896472308	-0.965887672737187	-2.95095079111207	0.336120379549946	1
Merged-chr12-85516026-3	chr12	85515946	85516146	+	840.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42156.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-43553978-3	chr17	43553862	43554062	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-10323.0	NM_001254953	100043332.0	Mm.17626	NM_001254953	ENSMUSG00000096140	Ankrd66	AU041848|D730048J04Rik|Gm4368	ankyrin repeat domain 66	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96670188-4	chr3	96670076	96670276	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081139)	promoter-TSS (NM_001081139)	45.0	NM_001356540	213121.0	Mm.39732	NM_001081139	ENSMUSG00000038354	Ankrd35	4732436F15Rik	ankyrin repeat domain 35	protein-coding	3.56900846089559	3.68195093946645	4.65475084155855	4.38653184066518	3.6636015974005	2.67256577687818	3.49384654281063	3.84526818672959	-0.928828116193849	0.0790351481354066	0.427632315906906
Merged-chr1-131448547-4	chr1	131448446	131448646	+	988.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081011, intron 2 of 22)	intron (NM_001081011, intron 2 of 22)	78815.0	NM_001081011	14270.0	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-120776799-2	chr5	120776699	120776899	+	766.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145226, intron 1 of 15)	intron (NM_145226, intron 1 of 15)	860.0	NM_145226	246727.0	Mm.204887	NM_145226	ENSMUSG00000032661	Oas3	Oasl10	2'-5' oligoadenylate synthetase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70797129-4	chr8	70797052	70797252	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_106099)	promoter-TSS (NR_106099)	-983.0	NR_106099	102466823.0		NR_106099	ENSMUSG00000099031	Mir7240	Gm27487|mmu-mir-7240	microRNA 7240	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-145109228-2	chr7	145109128	145109328	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	98891.0	NR_033626	100040049.0	Mm.102235	NR_033626	ENSMUSG00000109305	1810010D01Rik	Gm2572	RIKEN cDNA 1810010D01 gene	ncRNA	1.03768032060728	1.42261767159778	0.844292739401034	0.64821444734289	1.04725734007288	0.668069787286569	1.01065627595777	1.32378910334821	0.0490685196847538	0.973363695581153	0.998431161219273
Merged-chr2-120128767-4	chr2	120128660	120128860	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133838, intron 2 of 5)	intron (NM_133838, intron 2 of 5)	25815.0	NM_133838	98878.0	Mm.132226	NM_133838	ENSMUSG00000027293	Ehd4	2210022F10Rik|AI197390|AI846352|AV006278|Past2	EH-domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-49039706-4	chr6	49039610	49039810	+	914.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053110, intron 1 of 10)	B3A|SINE|B2	3192.0	NM_053110	93695.0	Mm.302602	NM_053110	ENSMUSG00000029816	Gpnmb	DC-HIL|Dchil|ipd	glycoprotein (transmembrane) nmb	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119297596-2	chr11	119297496	119297696	+	598.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_138669, intron 2 of 11)	intron (NM_138669, intron 2 of 11)	2447.0	NM_138669	192170.0	Mm.197555	NM_138669	ENSMUSG00000025580	Eif4a3	2400003O03Rik|Ddx48|eIF4A-III|mKIAA0111	eukaryotic translation initiation factor 4A3	protein-coding	-1.32440223303897	-1.29339468673833	-0.717877708899544	-1.31276353204239	-1.32392690786997	-1.29109028300231	-1.30162128075409	-1.31119997543009	-2.49510383040271	0.470258445164311	1
Merged-chr7-19713575-2	chr7	19713475	19713675	+	611.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001109748, intron 3 of 8)	intron (NM_001109748, intron 3 of 8)	1854.0	NM_001109748	53333.0	Mm.61682	NM_016871	ENSMUSG00000002984	Tomm40	AW539759|Mom35|Tom40	translocase of outer mitochondrial membrane 40	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-48878025-2	chr13	48877925	48878125	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7140.0	NM_011078	18676.0	Mm.486213	NM_011078	ENSMUSG00000038025	Phf2	GRC5	PHD finger protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-36103280-1	chr8	36103180	36103380	+	804.0	f1_balb.idr	exon (NM_172911, exon 3 of 6)	exon (NM_172911, exon 3 of 6)	8452.0	NM_172911	244418.0	Mm.244971	NM_172911	ENSMUSG00000050271	Prag1	9830148H23|D8Ertd82e|NACK|Sgk223|mFLJ00269	PEAK1 related kinase activating pseudokinase 1	protein-coding	-0.173405958778312	-0.156959485516353	-0.162330283020001	0.00617563331618518	0.721278846996154	-0.155751042948919	-0.161144314524981	0.283723362980774	3.11353082591372	0.179043323511421	1
Merged-chr9-96631565-4	chr9	96631458	96631658	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053268)	promoter-TSS (NM_053268)	-55.0	NM_053268	114713.0	Mm.124502	NM_053268	ENSMUSG00000032413	Rasa2	5430433H21Rik|AA517451|AU023900|GAP1m	RAS p21 protein activator 2	protein-coding	2.33949832249668	3.37057862975265	2.95769774214414	1.86056171284665	2.10465352086931	3.39496289761477	2.12666351904298	1.87064049318626	-0.418016544039306	0.621977426411982	0.979537295922371
Merged-chr1-61135749-2	chr1	61135649	61135849	+	627.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	157835.0	NM_017480	54167.0	Mm.42044	NM_017480	ENSMUSG00000026009	Icos	AILIM|CCLP|CRP-1|H4|Ly115	inducible T cell co-stimulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97457392-4	chr6	97457281	97457481	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	1905.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	7.62752314549593	7.54707650823257	7.90256375247466	7.37847459762294	7.6091266450533	7.69184235355991	8.21252986529409	7.47141729287619	0.152462524110472	0.385357594507575	0.876154616828737
Merged-chr4-152478551-2	chr4	152478451	152478651	+	821.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153424, intron 1 of 29)	intron (NM_153424, intron 1 of 29)	409.0	NM_153424	260305.0	Mm.302496	NM_153424	ENSMUSG00000039577	Nphp4	4930564O18Rik|nmf192	nephronophthisis 4 (juvenile) homolog (human)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-73846837-3	chr12	73846721	73846921	+	912.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-54503.0	NM_001313920	15251.0	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46935071-4	chr8	46934964	46935164	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51823.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-30755187-3	chr11	30755073	30755273	+	662.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-16602.0	NM_134013	103554.0	Mm.240066	NM_134013	ENSMUSG00000040850	Psme4	AA409398|AU041366|TEMO|mKIAA0077	proteasome (prosome, macropain) activator subunit 4	protein-coding	1.0398781096857	0.765900349227798	0.753050691527109	1.72897118917874	1.48087184230688	0.768772733193152	1.52892513083117	1.24167802179964	0.516996655005677	0.723541037613209	0.998431161219273
Merged-chr17-64597761-2	chr17	64597661	64597861	+	579.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3888.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-75824796-4	chr13	75824714	75824914	+	971.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15071.0	NM_001360151	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28366273-2	chr7	28366173	28366373	+	591.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_138752, intron 9 of 18)	intron (NM_138752, intron 9 of 18)	6389.0	NM_138752	101497.0	Mm.235700	NM_138752	ENSMUSG00000037552	Plekhg2	AI194308|Clg|Cslg	pleckstrin homology domain containing, family G (with RhoGef domain) member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-64959982-2	chr9	64959882	64960082	+	681.583374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175153)	promoter-TSS (NM_175153)	-850.0	NM_001077631	69882.0	Mm.272616	NM_175153	ENSMUSG00000034263	Ints14	2010321M09Rik|Vwa9	integrator complex subunit 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-84447150-2	chr14	84447050	84447250	+	612.375	f1_balb.idr|f1_c57bl6.idr	exon (NM_001013753, exon 1 of 4)	exon (NM_001013753, exon 1 of 4)	3587.0	NM_001013753	219228.0	Mm.153643	NM_001013753	ENSMUSG00000035566	Pcdh17	C030033F14Rik|Gm78	protocadherin 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55565928-2	chr14	55565828	55566028	+	659.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_037572, intron 11 of 14)	intron (NR_037572, intron 11 of 14)	5005.0	NM_001199009	28199.0	Mm.11535	NM_133734	ENSMUSG00000022214	Dcaf11	0710008A13Rik|C76035|D14Ucla1|Dacf11|GLO14|Wdr23	DDB1 and CUL4 associated factor 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-155382849-2	chr2	155382750	155382950	+	753.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_178111, intron 1 of 3)	intron (NM_178111, intron 1 of 3)	994.0	NM_178111	68728.0	Mm.293605	NM_178111	ENSMUSG00000038375	Trp53inp2	1110029F20Rik|Tp53inp2	transformation related protein 53 inducible nuclear protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-28750047-1	chr12	28749947	28750147	+	1000.0	f1_c57bl6.idr	intron (NM_001161410, intron 1 of 11)	intron (NM_001161410, intron 1 of 11)	347.0	NM_001161410	217449.0	Mm.132006	NM_178811	ENSMUSG00000020628	Trappc12	CGI-87|D930014A20Rik|Ttc15	trafficking protein particle complex 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-125569075-4	chr8	125568949	125569149	+	978.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357372, intron 1 of 21)	intron (NM_001357372, intron 1 of 21)	814.0	NM_001357372	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-50860203-2	chr18	50860103	50860303	+	632.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	HERV16-int|LTR|ERVL	-257695.0	NM_001081224	71373.0	Mm.63546	NM_001081224	ENSMUSG00000073565	Prr16	5430406M13Rik|AI607429	proline rich 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-78426567-4	chr10	78426479	78426679	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007793, intron 1 of 2)	intron (NM_007793, intron 1 of 2)	909.0	NM_007793	13014.0	Mm.6095	NM_007793	ENSMUSG00000005054	Cstb	AA960480|Stfb	cystatin B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-33241639-2	chr4	33241539	33241739	+	676.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7148.0	NM_001033225	108767.0	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-90205816-2	chr7	90205716	90205916	+	610.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360867, intron 19 of 19)	intron (NM_001360867, intron 19 of 19)	59616.0	NM_029256	75338.0	Mm.487222	NM_029256	ENSMUSG00000030617	Ccdc83	4930549K11Rik|4930554C01Rik|4932423M01Rik	coiled-coil domain containing 83	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-114258916-4	chr6	114258834	114259034	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23701.0	NM_178703	232333.0	Mm.5260	NM_178703	ENSMUSG00000030310	Slc6a1	A730043E01|GABATHG|GABATR|GAT-1|Gabt|Gabt1|Gat1|XT-1|Xtrp1	solute carrier family 6 (neurotransmitter transporter, GABA), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-32818852-2	chr12	32818729	32818929	+	943.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1506.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	-0.317174774914876	0.282082147401165	-0.600673939914653	-0.604051620913064	-0.608847209000576	-0.595335716984071	-0.599710747652842	-0.603460606257713	-3.54301506102005	0.188208996652481	1
Merged-chr3-19632563-2	chr3	19632463	19632663	+	582.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11B|LTR|ERVK	-11897.0	NM_001081281	381485.0	Mm.35419	NM_001081281	ENSMUSG00000060913	Trim55	D830041C10Rik|Murf2|Rnf29	tripartite motif-containing 55	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-163602293-4	chr2	163602185	163602385	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181734)	promoter-TSS (NM_181734)	-29.0	NM_181734	76080.0	Mm.89828	NM_029512	ENSMUSG00000017679	Ttpal	3110080A02Rik|5830472M02Rik	tocopherol (alpha) transfer protein-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-84356231-3	chr3	84356102	84356302	+	701.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040752, intron 3 of 3)	intron (NR_040752, intron 3 of 3)	23719.0	NR_040752	75309.0	Mm.159497	NR_040752	ENSMUSG00000104004	4930565D16Rik	-	RIKEN cDNA 4930565D16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-41505711-2	chr10	41505611	41505811	+	761.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_028430, intron 6 of 7)	B3A|SINE|B2	-13789.0	NM_016898	53599.0	Mm.269815	NM_016898	ENSMUSG00000019818	Cd164	A115|A24|AA589639|AW540279|MGC-24|MSSP	CD164 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-172998439-1	chr2	172998339	172998539	+	640.0	f1_balb.idr	Intergenic	MTC|LTR|ERVL-MaLR	-1678.0	NM_175112	66679.0	Mm.4113	NM_175112	ENSMUSG00000027509	Rae1	3230401I12Rik|D2Ertd342e|MNRP|MNRP41	ribonucleic acid export 1	protein-coding	1.35979761562965	0.895931199203569	0.874458310888049	0.857346556429305	1.81976926252491	1.3824460298523	1.89623362934993	2.44882170022042	3.40004893906162	0.0122744803898259	0.125799443949713
Merged-chr5-110978586-4	chr5	110978493	110978693	+	984.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001267622, intron 2 of 22)	intron (NM_001267622, intron 2 of 22)	-25551.0	NR_030482	735278.0		NR_030482	ENSMUSG00000076163	Mir701	Mirn701|mir-701|mmu-mir-701	microRNA 701	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-52217629-2	chr6	52217529	52217729	+	660.833313	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010455, exon 1 of 2)	5' UTR (NM_010455, exon 1 of 2)	944.0	NM_010455	15404.0	Mm.294826	NM_010455	ENSMUSG00000038236	Hoxa7	AV118143|Hox-1.1|M6	homeobox A7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-94175086-2	chr8	94174986	94175186	+	610.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	2468.0	NM_008630	17750.0	Mm.147226	NM_008630	ENSMUSG00000031762	Mt2	AA409533|MT-II|Mt-2	metallothionein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128544009-2	chr10	128543909	128544109	+	746.333313	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_134003, exon 3 of 3)	3' UTR (NM_134003, exon 3 of 3)	3735.0	NM_134003	103284.0	Mm.68289	NM_134003	ENSMUSG00000039810	Zc3h10	AI790326	zinc finger CCCH type containing 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-104353980-1	chr7	104353880	104354080	+	650.666687	f0_balb.idr	promoter-TSS (NM_175677)	promoter-TSS (NM_175677)	-622.0	NM_001146007	319236.0	Mm.425502	NM_175677	ENSMUSG00000057143	Trim12c	9230105E10Rik|Trim12-2	tripartite motif-containing 12C	protein-coding	3.80843824953195	2.76121785125219	4.31434879129422	1.67567686598503	3.60784216081961	4.16259308112695	3.90627068260552	4.22278951649324	0.714342234129758	0.273176137072251	0.776651246857229
Merged-chr6-125161742-2	chr6	125161631	125161831	+	662.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001302779)	TTS (NM_001302779)	4042.0	NM_008084	14433.0	Mm.304088	NM_008084	ENSMUSG00000057666	Gapdh	Gapd	glyceraldehyde-3-phosphate dehydrogenase	protein-coding	-0.0183630881140213	0.325827323037678	-0.00904931083455315	0.484145417525324	0.337746664411641	-0.00344163039070824	-0.00804258351320988	0.27391989537946	-0.453745683180165	0.832416668075515	1
Merged-chr7-116531449-4	chr7	116531362	116531562	+	976.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360375, intron 11 of 14)	intron (NM_001360375, intron 11 of 14)	27093.0	NM_001360375	53322.0	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-65480596-4	chr5	65480495	65480695	+	951.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133697, intron 1 of 4)	ID_B1|SINE|B4	12240.0	NM_133697	68552.0	Mm.10709	NM_133697	ENSMUSG00000037822	Smim14	1110003E01Rik|1700127H04Rik|5430439C17Rik|MAd4	small integral membrane protein 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-140172175-2	chr4	140172075	140172275	+	559.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198610, intron 1 of 9)	intron (NM_198610, intron 1 of 9)	29302.0	NR_153821	102636673.0	Mm.449180	NR_153821		Gm13029	Gm33676	predicted gene 13029	ncRNA	1.97367707305226	2.5319585015362	1.13256027910899	1.70592309430226	1.9911443532597	2.55185915292009	1.13860737235943	1.71491789239022	0.0383468932605872	0.972480172028866	0.998431161219273
Merged-chr10-75059522-3	chr10	75059418	75059618	+	809.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1378.0	NM_001081412	110279.0	Mm.333722	NM_001081412	ENSMUSG00000009681	Bcr	5133400C09Rik|AI561783|AI853148|mKIAA3017	breakpoint cluster region	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131978876-2	chr1	131978776	131978976	+	889.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_145977, exon 4 of 5)	exon (NM_145977, exon 4 of 5)	8267.0	NM_145977	212980.0	Mm.200307	NM_145977	ENSMUSG00000026435	Slc45a3	2210413P12Rik|AU023994|AU043764|IPCA-6|PRST|Pcanap6	solute carrier family 45, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133160430-3	chr4	133160323	133160523	+	907.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153423, intron 1 of 8)	RSINE1|SINE|B4	29790.0	NM_153423	242687.0	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	2.92432899047193	2.33859009797609	3.08197007245751	2.48854699260188	2.69996347292823	2.35548941219814	3.40063412136311	2.92716285301969	0.297677500872237	0.675367740542118	0.99440487726309
Merged-chr11-115599344-2	chr11	115599255	115599455	+	818.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_173048, intron 1 of 16)	intron (NM_173048, intron 1 of 16)	4561.0	NM_001252067	260302.0	Mm.119479	NM_173048	ENSMUSG00000020740	Gga3	C230037M19Rik|mKIAA0154	golgi associated, gamma adaptin ear containing, ARF binding protein 3	protein-coding	1.35480536219398	1.72122612464602	2.24328906615916	1.41907017673997	2.07746630629216	2.96093129725589	2.26186999716755	1.79620450721797	1.54809963417983	0.113158825177429	0.52650449242973
Merged-chr11-49653023-2	chr11	49652923	49653123	+	763.416626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_008029)	TTS (NM_008029)	-10572.0	NM_054037	68662.0	Mm.22802	NM_054037	ENSMUSG00000064057	Scgb3a1	HIN-1|LuLeu2|Pnsp2|UGRP2|Utgrp2	secretoglobin, family 3A, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-84075336-2	chr17	84075236	84075436	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3324.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-60743832-2	chr13	60743732	60743932	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 19 of 26)	intron (NM_134062, intron 19 of 26)	42532.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-82858548-4	chr4	82858463	82858663	+	870.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149737, intron 1 of 7)	intron (NR_149737, intron 1 of 7)	1110.0	NR_149737	68268.0	Mm.32047	NM_026647	ENSMUSG00000028403	Zdhhc21	9130404H11Rik|AL024349|D130004H04Rik|dep	zinc finger, DHHC domain containing 21	protein-coding	2.18187545814491	2.09751613425638	1.73466963124461	2.19996399667419	1.63384951004303	2.11224758263074	2.16873872129546	2.21091665546021	-0.050662511137272	0.955729554722133	0.998431161219273
Merged-chr10-80705716-2	chr10	80705616	80705816	+	904.75	f1_balb.idr|f1_c57bl6.idr	TTS (NM_027829)	TTS (NM_027829)	3023.0	NM_027829	71564.0	Mm.35802	NM_027829	ENSMUSG00000055862	Izumo4	9030607L17Rik|AI550407	IZUMO family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89164795-4	chr3	89164696	89164896	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007712)	promoter-TSS (NM_007712)	1.0	NM_001163432	12748.0	Mm.288098	NM_007712	ENSMUSG00000068917	Clk2	AU041688	CDC-like kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-56879937-3	chr10	56879861	56880061	+	878.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	447980.0	NR_152768	102640560.0	Mm.417249	NR_152768		Gm36595	-	predicted gene, 36595	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-19055647-4	chr2	19055553	19055753	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57334.0	NR_024323	74629.0	Mm.117687	NR_024323	ENSMUSG00000026736	4930426L09Rik	-	RIKEN cDNA 4930426L09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3660140-4	chr4	3660032	3660232	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040643, intron 3 of 3)	intron (NR_040643, intron 3 of 3)	3626.0	NR_040643	70143.0	Mm.417835	NR_040643	ENSMUSG00000085394	2210414B05Rik	-	RIKEN cDNA 2210414B05 gene	ncRNA	-0.308464760466365	-0.292357515793702	0.513876610851746	-0.301675048526232	-0.307451817918877	-0.291177814258474	0.322608573800776	-0.300963187322324	-0.547982556169849	0.831438725925057	1
Merged-chr10-51532098-2	chr10	51531998	51532198	+	795.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPEY5_I-int|LTR|ERVK	41200.0	NM_013532	14728.0	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-10912808-4	chr4	10912695	10912895	+	976.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38297.0	NM_026005	67157.0	Mm.440552	NM_026005	ENSMUSG00000059482	2610301B20Rik	AI428449	RIKEN cDNA 2610301B20 gene	protein-coding	1.85529136073081	0.759423991020272	1.42111683040525	0.733751990759674	1.66820220690324	0.762623698901325	0.967553477403766	1.25532665355559	-0.28866101223351	0.844557711022551	0.998431161219273
Merged-chr11-44528643-4	chr11	44528572	44528772	+	764.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166553, intron 2 of 5)	MTD|LTR|ERVL-MaLR	9295.0	NM_001166553	74315.0	Mm.156771	NM_028862	ENSMUSG00000019189	Rnf145	3732413I11Rik|TMRF1	ring finger protein 145	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85424051-4	chr12	85423944	85424144	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49327.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56125143-2	chr17	56125043	56125243	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001130456, intron 16 of 16)	intron (NM_001130456, intron 16 of 16)	-3197.0	NM_029796	76905.0	Mm.348025	NM_029796	ENSMUSG00000037095	Lrg1	1300008B03Rik|2310031E04Rik|Lrg|Lrhg	leucine-rich alpha-2-glycoprotein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6337328-2	chr19	6337228	6337428	+	720.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001168489, intron 4 of 9)	intron (NM_001168489, intron 4 of 9)	2289.0	NM_008583	17283.0	Mm.12917	NM_008583	ENSMUSG00000024947	Men1	AW045611	multiple endocrine neoplasia 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-100202042-4	chr12	100201961	100202161	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001313934, intron 1 of 5)	AmnSINE1|SINE|Deu	1917.0	NM_001313934	12313.0	Mm.285993	NM_009790	ENSMUSG00000001175	Calm1	AI256814|AI327027|AI461935|AL024000|CaM|Calm|Cam1	calmodulin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-47054830-4	chr7	47054719	47054919	+	849.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_026436)	TTS (NM_026436)	4179.0	NM_026436	67893.0	Mm.27338	NM_026436	ENSMUSG00000010307	Tmem86a	1810054O13Rik|AI414959|AW742698	transmembrane protein 86A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-58478078-4	chr13	58477984	58478184	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-74741.0	NM_001301341	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-114655470-3	chr6	114655353	114655553	+	844.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253718, intron 2 of 19)	intron (NM_001253718, intron 2 of 19)	12356.0	NM_001253718	74244.0	Mm.275332	NM_028835	ENSMUSG00000030314	Atg7	1810013K23Rik|Agp7|Apg7l|Atg7l|Gm21553	autophagy related 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80832894-1	chr7	80832794	80832994	+	590.0	f1_c57bl6.idr	Intergenic	RLTR19-int|LTR|ERVK	-29214.0	NM_009553	22691.0	Mm.358645	NM_009553	ENSMUSG00000038797	Zscan2	Zfp-29|Zfp29	zinc finger and SCAN domain containing 2	protein-coding	-2.18292257394068	-2.15545247547656	-2.03304972317742	-2.17058342868585	-2.18099422382073	-2.1536522739386	-2.16187909550322	-2.16936197735154	-0.683654500252594	0.846597994014493	1
Merged-chr2-73371350-3	chr2	73371191	73371391	+	888.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276444, intron 4 of 15)	intron (NM_001276444, intron 4 of 15)	15189.0	NM_001276443	68526.0	Mm.451014	NM_001080707	ENSMUSG00000041762	Gpr155	1110017O10Rik|DEPDC3|F730029F15Rik|PGR22	G protein-coupled receptor 155	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-113981142-1	chr6	113981042	113981242	+	575.0	f0_balb.idr	intron (NM_009723, intron 1 of 21)	RSINE1|SINE|B4	-46461.0	NM_001347365	11941.0	Mm.321755	NM_009723	ENSMUSG00000030302	Atp2b2	D6Abb2e|Gena300|PMCA2|Tmy|dfw|jog|wms|wri	ATPase, Ca++ transporting, plasma membrane 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-76243765-4	chr11	76243677	76243877	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026029)	promoter-TSS (NM_026029)	41.0	NM_183263	67390.0	Mm.24886	NM_183263	ENSMUSG00000038046	Mrm3	4833420N02Rik|AI255153|HC90|Rnmtl1	mitochondrial rRNA methyltransferase 3	protein-coding	5.74616686928313	5.14696950011883	5.03026944077136	5.14458734317855	5.17844360364071	5.39901586967428	4.25525698823005	5.25938019570344	-0.25322577040682	0.45523438266685	0.919253057979521
Merged-chr5-114383041-2	chr5	114382941	114383141	+	751.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001331219, intron 1 of 26)	intron (NM_001331219, intron 1 of 26)	2421.0	NR_138602	117146.0	Mm.28792	NM_054093	ENSMUSG00000029577	Ube3b	AI449831|AU020130	ubiquitin protein ligase E3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-61772238-3	chr1	61772129	61772329	+	964.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081050, intron 2 of 22)	intron (NM_001081050, intron 2 of 22)	133405.0	NM_001081050	72823.0	Mm.35153	NM_001081050	ENSMUSG00000052062	Pard3b	1810008K04Rik|2010002N16Rik|2810455B10Rik|Als2cr19|PAR3B|PAR3L|PAR3beta	par-3 family cell polarity regulator beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-37434753-4	chr19	37434623	37434823	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008245)	promoter-TSS (NM_008245)	-118.0	NM_008245	15242.0	Mm.33896	NM_008245	ENSMUSG00000024986	Hhex	Hex|Hex1|Hhex-rs2|Prh|Prhx	hematopoietically expressed homeobox	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-53547088-4	chr5	53546984	53547184	+	946.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8695.0	NM_001080928	19664.0	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	-0.0081950312547955	0.347934382968061	0.186806809451092	-0.264361489684448	-0.269102909236017	-0.255654385398739	-0.260039497400684	-0.263774733109984	-3.66669336559778	0.122265636875941	1
Merged-chr7-118821424-4	chr7	118821331	118821531	+	849.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027815, intron 26 of 30)	intron (NM_027815, intron 26 of 30)	34182.0	NM_001168220	66356.0	Mm.482278	NM_023197	ENSMUSG00000030980	Knop1	2310008H09Rik|Tsg118	lysine rich nucleolar protein 1	protein-coding	-0.662826441749988	-1.00555184936033	-1.01675512286785	-1.01992432642343	-0.654846858003193	-1.00312405325568	-1.01421894731451	-1.01959449741028	0.0418081237259606	0.989738874530268	1
Merged-chr1-156581262-2	chr1	156581207	156581407	+	629.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001136104, intron 1 of 12)	MTD|LTR|ERVL-MaLR	22520.0	NM_001136104	11352.0	Mm.329515	NM_009595	ENSMUSG00000026596	Abl2	AA536808|Abll|Arg	v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)	protein-coding	2.16485595483857	1.72336812625387	0.964565429098279	1.33318563100184	1.74229820369699	1.73719876358998	0.968611692594971	1.33969020889119	-0.473739844375757	0.70500102552886	0.998431161219273
Merged-chr16-17148260-2	chr16	17148160	17148360	+	685.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_026940, exon 5 of 5)	exon (NM_026940, exon 5 of 5)	-1031.0	NM_001306169	76872.0	Mm.101656	NM_029779	ENSMUSG00000022768	Ccdc116	4930432J16Rik	coiled-coil domain containing 116	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-39053165-1	chr16	39053065	39053265	+	673.0	f0_balb.idr	Intergenic	Intergenic	135785.0	NR_153800	102640746.0		NR_153800		Gm36742	-	predicted gene, 36742	ncRNA	1.98341714691386	1.16165592995803	1.13389455028717	1.35048974015244	2.18856155292959	2.65120050757036	2.38600715119175	1.99542341164872	2.37768291744652	0.0273240271996387	0.222511546385474
Merged-chr12-12233698-1	chr12	12233598	12233798	+	563.5	f1_balb.idr	Intergenic	MTD|LTR|ERVL-MaLR	-28441.0	NM_029758	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	0.0713900549637092	0.090546235583189	0.0842925724350678	0.0794533170014218	0.745980069777697	0.607979064932611	0.6818604985255	0.0802996612711369	4.15244034100322	0.0493402145199571	1
Merged-chr10-128616083-2	chr10	128615983	128616183	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	10423.0	NM_013765	27370.0	Mm.32118	NM_013765	ENSMUSG00000025362	Rps26	-	ribosomal protein S26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-127640055-4	chr3	127640002	127640202	+	757.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6966.0	NM_009718	11924.0	Mm.42017	NM_009718	ENSMUSG00000027967	Neurog2	Atoh4|Math4A|bHLHa8|ngn-2|ngn2	neurogenin 2	protein-coding	1.33064051162195	1.63970947806962	0.902743029633536	0.890298432335988	1.56445544488391	1.653151438898	1.12419832560277	2.00567144999863	1.42316544319137	0.267994020241247	0.770904364462136
Merged-chr5-135077240-2	chr5	135077140	135077340	+	566.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199677, intron 1 of 3)	intron (NM_001199677, intron 1 of 3)	1026.0	NM_177574	194309.0	Mm.44356	NM_177574	ENSMUSG00000043614	Vps37d	Wbscr24	vacuolar protein sorting 37D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-53758204-4	chr11	53758094	53758294	+	953.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5460.0	NR_106131	102465772.0		NR_106131	ENSMUSG00000099153	Mir7671	Gm27802|mmu-mir-7671	microRNA 7671	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-106322026-2	chr1	106321926	106322126	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133821, intron 4 of 16)	intron (NM_133821, intron 4 of 16)	150157.0	NM_133821	98432.0	Mm.24115	NM_133821	ENSMUSG00000044340	Phlpp1	AI836256|Phlpp|Plekhe1|SCOP|mKIAA0606	PH domain and leucine rich repeat protein phosphatase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28824121-2	chr7	28824021	28824221	+	809.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	-1217.0	NM_016772	51798.0	Mm.291776	NM_016772	ENSMUSG00000053898	Ech1	AA617331	enoyl coenzyme A hydratase 1, peroxisomal	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-16222709-3	chr19	16222583	16222783	+	931.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008139, intron 2 of 6)	intron (NM_008139, intron 2 of 6)	58585.0	NR_033228	595139.0	Mm.405662	NR_033228		E030024N20Rik	9030417F11Rik|Ppia-ps8	peptidylprolyl isomerase A pseudogene 8	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-119358216-2	chr8	119358116	119358316	+	584.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13678.0	NM_024219	68196.0	Mm.358714	NM_024219	ENSMUSG00000031839	Hsbp1	0610007A03Rik|AA408769|Hsp25	heat shock factor binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-45820203-3	chr4	45820087	45820287	+	817.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018741, intron 1 of 4)	intron (NM_018741, intron 1 of 4)	6640.0	NM_018741	75426.0	Mm.3919	NM_018741	ENSMUSG00000035551	Igfbpl1	2810011G06Rik|2810453O06Rik|IGFBPL	insulin-like growth factor binding protein-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-98264293-4	chr13	98264191	98264391	+	851.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271391, intron 1 of 7)	intron (NM_001271391, intron 1 of 7)	1215.0	NM_001271388	68558.0	Mm.209642	NM_023472	ENSMUSG00000021661	Ankra2	1110004M18Rik|Ankra	ankyrin repeat, family A (RFXANK-like), 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-44976595-4	chr2	44976497	44976697	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	46580.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-30303992-2	chr6	30303877	30304077	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_009459, intron 1 of 6)	CpG	562.0	NM_009459	22214.0	Mm.332967	NM_009459	ENSMUSG00000039159	Ube2h	1500009C23Rik|AI181839|AI326965|AI462483|AW227540|E2-20K|Gid3|N28148|Ubc8	ubiquitin-conjugating enzyme E2H	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-79885467-4	chr12	79885350	79885550	+	996.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	39283.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-100103485-2	chr13	100103385	100103585	+	803.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081061, intron 1 of 38)	intron (NM_001081061, intron 1 of 38)	585.0	NM_001081061	544971.0	Mm.288546	NM_001081061	ENSMUSG00000049658	Bdp1	AI662220|AW049390|AW456745|B130055N23Rik|G630013P12Rik|TAF3B1|TFC5|TFIIIB150|TFIIIB90|Tfnr|mKIAA1241	B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78254975-3	chr15	78254875	78255075	+	886.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008677, intron 5 of 9)	intron (NM_008677, intron 5 of 9)	10164.0	NM_008677	17972.0	Mm.2068	NM_008677	ENSMUSG00000071715	Ncf4	AI451400|p40phox	neutrophil cytosolic factor 4	protein-coding	1.56308827738576	2.888103970021	2.56193313221236	2.08594268982391	1.73262050339518	1.94490970502926	2.16667275008463	1.21419976863878	-1.38773155227356	0.160271601329967	0.62016942789409
Merged-chr2-66186348-2	chr2	66186248	66186448	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001047604, intron 27 of 28)	intron (NM_001047604, intron 27 of 28)	-61555.0	NM_015736	14425.0	Mm.439760	NM_015736	ENSMUSG00000026994	Galnt3	-	polypeptide N-acetylgalactosaminyltransferase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-14884834-4	chr9	14884755	14884955	+	991.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_176807)	TTS (NM_176807)	19096.0	NM_176807	64931.0	Mm.86738	NM_022888	ENSMUSG00000031933	Izumo1r	0910001L11Rik|C86255|Folbp3|Folr4|Juno	IZUMO1 receptor, JUNO	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-136684864-2	chr1	136684764	136684964	+	781.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_045325, intron 1 of 2)	intron (NR_045325, intron 1 of 2)	1235.0	NR_045325	100503460.0	Mm.30630	NR_045324	ENSMUSG00000097113	Gm19705	-	predicted gene, 19705	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-69586207-1	chr2	69586107	69586307	+	661.0	f0_balb.idr	promoter-TSS (NM_001081088)	promoter-TSS (NM_001081088)	-140.0	NM_001081088	14725.0	Mm.23847	NM_001081088	ENSMUSG00000027070	Lrp2	AI315343|AW536255|D230004K18Rik|Gp330|Megalin|b2b1625.2Clo	low density lipoprotein receptor-related protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-154930328-2	chr4	154930233	154930433	+	762.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2256.0	NM_178931	230979.0	Mm.215147	NM_178931	ENSMUSG00000042333	Tnfrsf14	Atar|HveA|Hvem|Tnfrs14	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	protein-coding	-0.5772163492709	-0.236458301632665	-0.26699685897637	-0.573291598931613	-0.221647585023598	-0.567108374282768	-0.570229432990363	-0.572876703350012	-0.798040410349573	0.767658136562082	1
Merged-chr9-53390395-3	chr9	53390298	53390498	+	787.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_212445, intron 2 of 7)	intron (NM_212445, intron 2 of 7)	6375.0	NM_212445	68304.0	Mm.427519	NM_212445	ENSMUSG00000034487	Kdelc2	2010004J24Rik|4833410J10Rik|AW549401	KDEL (Lys-Asp-Glu-Leu) containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-104370318-4	chr7	104370205	104370405	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11659.0	NM_175648	244183.0	Mm.347647	NM_175648	ENSMUSG00000052749	Trim30b	A530023O14Rik|Trim30-1	tripartite motif-containing 30B	protein-coding	4.23938514486452	4.61789854536292	5.07961561415629	3.78966643497414	4.60150011418416	4.70029273271624	4.28171343236212	4.6099931720522	0.0603116319834264	0.881799363138354	0.998431161219273
Merged-chr8-53434449-4	chr8	53434376	53434576	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-77226.0	NM_001205054	11593.0	Mm.334535	NM_001005847	ENSMUSG00000031521	Aga	AW060726	aspartylglucosaminidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-69648479-2	chr2	69648379	69648579	+	864.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_028284, intron 1 of 11)	RSINE1|SINE|B4	1224.0	NM_028284	72569.0	Mm.252136	NM_028284	ENSMUSG00000063145	Bbs5	1700049I01Rik|2700023J09Rik	Bardet-Biedl syndrome 5 (human)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-92007770-3	chr2	92007704	92007904	+	702.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011957, intron 1 of 11)	intron (NM_011957, intron 1 of 11)	16366.0	NM_011957	26427.0	Mm.10353	NM_011957	ENSMUSG00000027230	Creb3l1	Oasis	cAMP responsive element binding protein 3-like 1	protein-coding	-0.0782163878721183	0.557273840649908	-0.0672325165792314	-0.0713586194200098	-0.0771955684659885	0.445376907240505	-0.0660536055813423	0.365096880477959	0.493566097950097	0.829684132750673	1
Merged-chr5-88563046-2	chr5	88562947	88563147	+	981.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-1993.0	NM_001289774	52822.0	Mm.270469	NM_027530	ENSMUSG00000029291	Rufy3	2810428M05Rik|6330416M07Rik|AW455998|AW538594|D5Bwg0860e|Ripx|Rpipx	RUN and FYVE domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-84922205-3	chr17	84922126	84922326	+	649.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027929, intron 2 of 3)	intron (NR_027929, intron 2 of 3)	-34515.0	NM_001159497	19043.0	Mm.249695	NM_011151	ENSMUSG00000061130	Ppm1b	PP2CB	protein phosphatase 1B, magnesium dependent, beta isoform	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-71179495-4	chr9	71179399	71179599	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110517, intron 5 of 5)	MIR|SINE|MIR	10723.0	NR_110517	102635087.0	Mm.444536	NR_110517	ENSMUSG00000111429	Gm32511	-	predicted gene, 32511	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-94768841-3	chr4	94768741	94768941	+	973.544434	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013690, intron 1 of 22)	ORR1E|LTR|ERVL-MaLR	29552.0	NM_001290551	21687.0	Mm.14313	NM_013690	ENSMUSG00000006386	Tek	AA517024|Cd202b|Hyk|STK1|Tie-2|Tie2	TEK receptor tyrosine kinase	protein-coding	2.74158398097698	2.839589860385	2.57165945703933	2.10543790436496	4.23460883981666	4.08007644997439	3.35336737635344	4.59458665445836	2.41158340977034	4.7373771565734e-05	0.00166846529719866
Merged-chr9-32223883-2	chr9	32223783	32223983	+	561.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177379)	promoter-TSS (NM_177379)	-366.0	NM_177379	330914.0	Mm.46683	NM_177379	ENSMUSG00000041444	Arhgap32	3426406O18Rik|Gc-gap|Grit|Px-rics|Rics|mKIAA0712|p200Rhogap|p250Gap	Rho GTPase activating protein 32	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-116821650-4	chr4	116821567	116821767	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146256)	promoter-TSS (NM_146256)	-159.0	NM_146256	242642.0	Mm.279897	NM_146256	ENSMUSG00000043155	Hpdl	A830048M07Rik|BC034099|Gloxd1	4-hydroxyphenylpyruvate dioxygenase-like	protein-coding	3.00500002241139	4.04919281758908	3.52532567431944	2.84401593297612	3.42382034549879	3.49792191598737	3.76847232284685	3.08733428038667	0.0423867662716775	0.94152180711356	0.998431161219273
Merged-chr3-87561749-4	chr3	87561657	87561857	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36179.0	NM_001359750	27049.0	Mm.219460	NM_012051	ENSMUSG00000003382	Etv3	AI414410|METS|Pe1	ets variant 3	protein-coding	5.39118000474832	5.56182084284378	4.83436548115548	5.27433400284328	5.13315854560463	5.33941030685266	4.91290905796143	5.20784349899545	-0.157576180164463	0.601459354700736	0.973338823574839
Merged-chr13-9874175-4	chr13	9874074	9874274	+	969.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-108853.0	NM_144516	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-35741073-3	chr7	35740963	35741163	+	895.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178704, intron 3 of 18)	B3|SINE|B2	13391.0	NM_178704	233115.0	Mm.257808	NM_178704	ENSMUSG00000043671	Dpy19l3	6030410G08|9330164H19Rik	dpy-19-like 3 (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-106247894-4	chr9	106247774	106247974	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291835)	promoter-TSS (NM_001291835)	80.0	NM_020559	11655.0	Mm.290578	NM_020559	ENSMUSG00000032786	Alas1	ALAS|ALAS-N|Alas-1|Alas-h	aminolevulinic acid synthase 1	protein-coding	0.0893096648872685	0.138272940995439	1.87111411551133	0.110611796488189	0.0925547034843576	0.141657874171847	1.33634022771376	0.112786423348616	-0.960802322710299	0.770300833944818	0.998431161219273
Merged-chr4-14939329-2	chr4	14939229	14939429	+	979.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356579, intron 3 of 5)	intron (NM_001356579, intron 3 of 5)	8688.0	NM_001243100	100038514.0	Mm.331495	NM_001243100		Gm11837	-	predicted gene 11837	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81853098-2	chr15	81852998	81853198	+	913.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_020507, intron 1 of 1)	intron (NM_020507, intron 1 of 1)	5228.0	NM_020507	57259.0	Mm.323595	NM_020507	ENSMUSG00000048546	Tob2	2900090N22Rik|4930545K18Rik|AV071822|mKIAA1663	transducer of ERBB2, 2	protein-coding	0.500886798110733	0.342987662117967	1.57694869083005	0.319297826102994	0.507314983525217	0.345922512323228	1.59571716127697	0.321141210717248	0.0410950568014028	0.98141847098692	0.998431161219273
Merged-chr12-85626959-1	chr12	85626859	85627059	+	540.0	f1_balb.idr	intron (NM_001205053, intron 2 of 3)	Lx8b|LINE|L1	26941.0	NM_001205053	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4118477-2	chr19	4118377	4118577	+	547.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016666, intron 2 of 6)	intron (NM_016666, intron 2 of 6)	3098.0	NM_001276284	11632.0	Mm.10433	NM_016666	ENSMUSG00000024847	Aip	AA408703|AW476050|Ara9|D19Bwg1412e|Fkbp16|Xap2	aryl-hydrocarbon receptor-interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-19707513-3	chr14	19707400	19707600	+	789.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43757.0	NM_008695	18074.0	Mm.20348	NM_008695	ENSMUSG00000021806	Nid2	AW547149|Ly111|NID-2|entactin-2|nidogen-2	nidogen 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-46138640-4	chr4	46138574	46138774	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173033)	promoter-TSS (NM_173033)	35.0	NM_001355376	272027.0	Mm.249594	NM_173033	ENSMUSG00000035495	Tstd2	3010020C06	thiosulfate sulfurtransferase (rhodanese)-like domain containing 2	protein-coding	3.97345803258581	3.91260204699171	3.61985611357759	4.12098766131427	3.95316150528582	4.59780614388738	3.64841348339161	3.84043136293341	0.185933976724314	0.687842389100191	0.996533206832645
Merged-chr7-110260111-4	chr7	110260016	110260216	+	772.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009302, intron 3 of 11)	intron (NM_009302, intron 3 of 11)	38413.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-129658131-2	chr3	129658040	129658240	+	753.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	66946.0	NM_001310737	13645.0	Mm.252481	NM_010113	ENSMUSG00000028017	Egf	AI790464	epidermal growth factor	protein-coding	1.41322168162279	1.22817723552013	2.16927199068119	2.10129129624727	1.28624025507599	0.991293407646801	1.38846560012993	1.49820609473542	-1.66231726675154	0.15751581858574	0.614127423545834
Merged-chr5-3509688-4	chr5	3509607	3509807	+	789.070801	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 5 of 7)	intron (NM_009873, intron 5 of 7)	-34126.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-34149266-3	chr13	34149194	34149394	+	620.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13670.0	NM_001101430	69666.0	Mm.24788	NM_001101430	ENSMUSG00000071451	Psmg4	PAC-4|mPAC4	proteasome (prosome, macropain) assembly chaperone 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-79483430-2	chr14	79483330	79483530	+	737.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007920, intron 1 of 8)	B3|SINE|B2	-2162.0	NM_018765	22380.0	Mm.476813	NM_018765	ENSMUSG00000022023	Wbp4	AW545037|BB101031|FBP21	WW domain binding protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-137307689-4	chr5	137307553	137307753	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031405)	promoter-TSS (NM_031405)	21.0	NM_031405	83701.0	Mm.387734	NM_031405	ENSMUSG00000037364	Srrt	2810019G02Rik|ASR2A|ASR2B|ASR2C|ASR2D|Ars2|Asr2	serrate RNA effector molecule homolog (Arabidopsis)	protein-coding	2.51818352233361	2.62906618240294	2.43604038953085	2.36873444099807	2.61544639116814	1.46077405446207	2.45480612769421	1.9955103473065	-0.611536176165137	0.478929129582277	0.928092227925527
Merged-chr15-95794439-2	chr15	95794336	95794536	+	652.5	f0_balb.idr|f0_c57.idr	intron (NM_175344, intron 1 of 19)	intron (NM_175344, intron 1 of 19)	3593.0	NM_001253813	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105937106-4	chr8	105936996	105937196	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013640, intron 4 of 7)	intron (NM_013640, intron 4 of 7)	1296.0	NM_013640	19171.0	Mm.787	NM_013640	ENSMUSG00000031897	Psmb10	Mecl-1|Mecl1	proteasome (prosome, macropain) subunit, beta type 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-65283021-2	chr1	65282921	65283121	+	555.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28236.0	NM_139270	213527.0	Mm.294225	NM_139270	ENSMUSG00000025946	Pth2r	Pthr2	parathyroid hormone 2 receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70807399-2	chr8	70807272	70807472	+	627.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F1|SINE|Alu	-1077.0	NM_008353	16161.0	Mm.731	NM_008353	ENSMUSG00000000791	Il12rb1	CD212|IL-12R[b]	interleukin 12 receptor, beta 1	protein-coding	2.08829422072448	1.31757239498523	2.02498986125283	2.47078071425296	1.88844122301649	2.35911856418053	2.28047803058151	1.84207084319687	0.15583938415862	0.871184186641501	0.998431161219273
Merged-chr11-53776421-2	chr11	53776321	53776521	+	611.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001159396, exon 10 of 10)	exon (NM_001159396, exon 10 of 10)	5948.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167761007-3	chr2	167760930	167761130	+	953.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	69853.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-184908741-3	chr1	184908697	184908897	+	852.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145515, intron 13 of 17)	intron (NM_145515, intron 13 of 17)	-25761.0	NM_178692	226777.0	Mm.169542	NM_178692	ENSMUSG00000039349	C130074G19Rik	-	RIKEN cDNA C130074G19 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-108013291-4	chr13	108013185	108013385	+	878.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31189.0	NM_001048250	75616.0	Mm.491164	NM_001048250	ENSMUSG00000071180	Smim15	2810008M24Rik	small integral membrane protein 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-60980986-2	chr18	60980886	60981086	+	637.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177407, intron 16 of 17)	intron (NM_177407, intron 16 of 17)	17432.0	NM_001286809	12322.0	Mm.131530	NM_009792	ENSMUSG00000024617	Camk2a	CaMKII|R74975|mKIAA0968	calcium/calmodulin-dependent protein kinase II alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-29796361-1	chr17	29796261	29796461	+	541.0	f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-79344.0	NM_001163741	68597.0	Mm.390979	NM_026782	ENSMUSG00000024018	Ccdc167	1110021J02Rik	coiled-coil domain containing 167	protein-coding	3.2836590370786	3.08331373246261	2.54798024830828	2.47674095734301	3.19808934072484	2.65526980667088	2.56778697679212	2.19868708104376	-0.347446468404175	0.631003683942289	0.981518867753619
Merged-chr17-80756252-2	chr17	80756152	80756352	+	733.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28227.0	NM_001290345	225028.0	Mm.311948	NM_001081357	ENSMUSG00000024242	Map4k3	4833416M01Rik|4833416M07Rik|9530052P13Rik|Glk|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1	mitogen-activated protein kinase kinase kinase kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115469223-2	chr5	115469123	115469323	+	654.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_151517, intron 1 of 2)	intron (NR_151517, intron 1 of 2)	3081.0	NM_001356587	18778.0	Mm.20190	NM_011107	ENSMUSG00000029522	Pla2g1b	Pla2a|sPLA2IB	phospholipase A2, group IB, pancreas	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36563775-2	chr18	36563675	36563875	+	632.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_175375, intron 1 of 33)	intron (NM_175375, intron 1 of 33)	3172.0	NM_175375	108857.0	Mm.482287	NM_175375	ENSMUSG00000024483	Ankhd1	1110004O12Rik|4933432B13Rik|9130019P20Rik|A530027J04Rik|A630021B20Rik|AA571404|Mask|mFLJ00246|mKIAA1085	ankyrin repeat and KH domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-92978887-4	chr1	92978783	92978983	+	698.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022320)	promoter-TSS (NM_022320)	-20.0	NM_022320	64095.0	Mm.152780	NM_022320	ENSMUSG00000026271	Gpr35	KPG_007	G protein-coupled receptor 35	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-76179715-4	chr11	76179609	76179809	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026664)	promoter-TSS (NM_026664)	-79.0	NM_026664	68299.0	Mm.46397	NM_026664	ENSMUSG00000017288	Vps53	2010002A08Rik|2310040I21Rik|3100002B05Rik|Hccs1	VPS53 GARP complex subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36129350-4	chr1	36129253	36129453	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14960.0	NR_105862	102465540.0		NR_105862	ENSMUSG00000098752	Mir6897	Gm27652|mmu-mir-6897	microRNA 6897	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-177983256-4	chr1	177983173	177983373	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-8125.0	NR_155538	545391.0	Mm.442974	NM_001034899	ENSMUSG00000091476	Gm16432	EG545391|EG666250	predicted gene 16432	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-85042737-4	chr15	85042630	85042830	+	774.237488	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356616)	promoter-TSS (NM_001356616)	-12.0	NM_001356616	73225.0	Mm.247535	NM_133750	ENSMUSG00000022434	Fam118a	-	family with sequence similarity 118, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-37657264-4	chr9	37657173	37657373	+	990.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025289)	promoter-TSS (NM_025289)	39.0	NM_025289	21376.0	Mm.28689	NM_025289	ENSMUSG00000011114	Tbrg1	AA408552|AA409675|Niam|Tb-5|mFLJ00213	transforming growth factor beta regulated gene 1	protein-coding	-0.311136263887911	-0.548114226997634	-0.551262723733573	-0.553678898994946	-0.109379957414653	-0.547401900518967	-0.240520014231464	-0.553257617133847	1.58588174510752	0.55620525933195	1
Merged-chr2-166716463-2	chr2	166716363	166716563	+	720.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2631.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-45915174-1	chr13	45915074	45915274	+	655.0	f0_balb.idr	intron (NM_001199304, intron 2 of 6)	intron (NM_001199304, intron 2 of 6)	49817.0	NM_001199304	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-83554001-4	chr9	83553894	83554094	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172507, intron 1 of 3)	intron (NM_172507, intron 1 of 3)	5656.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115475181-2	chr11	115475081	115475281	+	823.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361594)	promoter-TSS (NM_001361594)	-486.0	NM_177778	276905.0	Mm.38019	NM_177778	ENSMUSG00000057219	Armc7	A630084C13|BC023126	armadillo repeat containing 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141528587-1	chr4	141528487	141528687	+	678.0	f1_c57bl6.idr	intron (NM_001347235, intron 1 of 14)	B1F2|SINE|Alu	10010.0	NM_001347235	56381.0	Mm.299906	NM_019763	ENSMUSG00000040761	Spen	Mint|mKIAA0929	spen family transcription repressor	protein-coding	2.40895140014885	2.7250114297148	1.37029247139706	2.10238609633131	1.62926100463257	2.38322432332391	1.11731101868891	1.09126423198455	-1.41309581366885	0.204492570654251	0.69170614885264
Merged-chr11-86806485-2	chr11	86806385	86806585	+	789.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_026191, exon 2 of 18)	exon (NM_026191, exon 2 of 18)	1175.0	NM_026191	67487.0	Mm.260627	NM_026191	ENSMUSG00000018425	Dhx40	2410016C14Rik|ARG147|DDX40|PAD	DEAH (Asp-Glu-Ala-His) box polypeptide 40	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-56710771-2	chr18	56710671	56710871	+	585.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010721, intron 1 of 10)	B1_Mus1|SINE|Alu	2958.0	NM_010721	16906.0	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141447272-4	chr7	141447173	141447373	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360657)	promoter-TSS (NM_001360657)	-378.0	NM_026020	67186.0	Mm.380435	NM_026020	ENSMUSG00000025508	Rplp2	2700049I22Rik	ribosomal protein, large P2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99544749-4	chr7	99544695	99544895	+	802.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178220, intron 1 of 14)	MIR3|SINE|MIR	-7474.0	NR_029760	723840.0		NR_029760	ENSMUSG00000065571	Mir326	Mirn326|mir-326|mmu-mir-326	microRNA 326	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-38520102-4	chr2	38520022	38520222	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159631, intron 1 of 9)	intron (NM_001159631, intron 1 of 9)	8246.0	NM_001159631	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-9139771-2	chr13	9139671	9139871	+	685.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172585, intron 5 of 17)	intron (NM_172585, intron 5 of 17)	45890.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-29228285-4	chr19	29228185	29228385	+	854.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23518.0	NM_001048177	16452.0	Mm.275839	NM_008413	ENSMUSG00000024789	Jak2	Fd17	Janus kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-6478498-4	chr2	6478394	6478594	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	125758.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-32137339-4	chr5	32137250	32137450	+	959.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008037, intron 1 of 3)	intron (NM_008037, intron 1 of 3)	878.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-34119019-2	chr16	34118919	34119119	+	692.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177357, intron 33 of 59)	intron (NM_177357, intron 33 of 59)	-151981.0	NM_009471	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-64068510-3	chr15	64068372	64068572	+	851.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	-8024.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70620363-2	chr8	70620263	70620463	+	812.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_153074, intron 2 of 2)	intron (NM_153074, intron 2 of 2)	3519.0	NM_153074	211228.0	Mm.132939	NM_153074	ENSMUSG00000049988	Lrrc25	Mapa	leucine rich repeat containing 25	protein-coding	2.17225223716551	1.90237038881575	1.04286506891781	1.77515324803713	2.19221671663621	2.6505112348794	1.04883473004602	1.02531263348602	0.388005746031028	0.752416951767447	0.998431161219273
Merged-chr17-34643549-1	chr17	34643449	34643649	+	609.0	f1_c57bl6.idr	Intergenic	Intergenic	-1334.0	NM_019873	56299.0	Mm.10025	NM_019873	ENSMUSG00000033739	Fkbpl	DIR1|NG7|Ppiase-X|Wisp39	FK506 binding protein-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171328241-2	chr1	171328141	171328341	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011615)	promoter-TSS (NM_011615)	-567.0	NM_001357550	21945.0	Mm.270139	NM_011615	ENSMUSG00000013973	Dedd	CASP8IP1|DEFT|Dedpro1|FLDED1|KE05	death effector domain-containing	protein-coding	-0.163875143438975	-0.150594443622348	0.0133679819774331	0.349837122008573	-0.163050356320349	-0.149607924445138	0.0178273089856321	0.35649833909389	0.0313285976741798	0.98887422078113	1
Merged-chr7-122823612-4	chr7	122823509	122823709	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	146850.0	NR_045614	73951.0	Mm.389936	NR_045614		4930413G21Rik	-	RIKEN cDNA 4930413G21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-143506082-4	chr7	143505979	143506179	+	790.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-3555.0	NM_009434	22113.0	Mm.334344	NM_009434	ENSMUSG00000010760	Phlda2	Ipl|Tssc3	pleckstrin homology like domain, family A, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-143213258-2	chr4	143213158	143213358	+	982.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081355)	promoter-TSS (NM_001081355)	-549.0	NM_001256380	110593.0	Mm.332020	NM_001081355	ENSMUSG00000057637	Prdm2	4833427P12Rik|E330024L24Rik|Gm1033|Gm19732|KMT8|Riz|Riz1|Znfpr1c1	PR domain containing 2, with ZNF domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-71050147-2	chr12	71050047	71050247	+	548.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081195, intron 11 of 23)	intron (NM_001081195, intron 11 of 23)	34180.0	NM_001081195	238247.0	Mm.241601	NM_001081195	ENSMUSG00000048118	Arid4a	A630009N03|A630067N03Rik|Rbbp1	AT rich interactive domain 4A (RBP1-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-121986065-2	chr7	121985965	121986165	+	684.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_028758)	TTS (NM_028758)	-4372.0	NM_001033318	233824.0	Mm.442015	NM_001033318	ENSMUSG00000034951	Cog7	5630400E24Rik|Gm167	component of oligomeric golgi complex 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-149663195-2	chr4	149663096	149663296	+	704.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001164052, exon 1 of 22)	exon (NM_001164052, exon 1 of 22)	120.0	NM_001164052	18707.0	Mm.229108	NM_008840	ENSMUSG00000039936	Pik3cd	2410099E07Rik|2610208K16Rik|AW545373|p110delta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-113714507-4	chr6	113714412	113714612	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3180.0	NR_138135	58991.0	Mm.379095	NM_021488	ENSMUSG00000064177	Ghrl	2210006E23Rik|Ghr|MTLRP|MTLRPAP|m46	ghrelin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-62648436-2	chr11	62648336	62648536	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198861)	promoter-TSS (NM_198861)	87.0	NM_198861	192976.0	Mm.339972	NM_198861	ENSMUSG00000046417	Lrrc75a	Fam211a	leucine rich repeat containing 75A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-123957387-4	chr4	123957279	123957479	+	959.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39946.0	NM_017475	54170.0	Mm.220922	NM_017475	ENSMUSG00000028646	Rragc	AU041672|Gtr2|RAGC|TIB929|YGR163W	Ras-related GTP binding C	protein-coding	0.940385056246785	0.188758389306179	0.356376919357614	0.476410854819698	0.547496678177888	0.190094694963354	0.361200287219026	0.179058108468926	-1.37037531975727	0.469304339529519	1
Merged-chr2-27320166-2	chr2	27320066	27320266	+	760.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_133905, intron 2 of 29)	intron (NR_133905, intron 2 of 29)	-72863.0	NM_138665	192166.0	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-79324792-2	chr15	79324692	79324892	+	789.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_016915, intron 1 of 15)	intron (NM_016915, intron 1 of 15)	3579.0	NM_016915	53357.0	Mm.155620	NM_016915	ENSMUSG00000042632	Pla2g6	BB112799|PNPLA9|iPLA(2)beta|iPLA2|iPLA2beta	phospholipase A2, group VI	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-102751580-2	chr2	102751480	102751680	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077514, intron 6 of 10)	MER31A|LTR|ERV1	-4820.0	NR_153853	102637542.0	Mm.371582	NR_153852		Gm13872	-	predicted gene 13872	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-89282327-4	chr4	89282280	89282480	+	903.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001040654)	promoter-TSS (NM_001040654)	-188.0	NM_001040654	12578.0	Mm.4733	NM_009877	ENSMUSG00000044303	Cdkn2a	ARF-INK4a|Arf|INK4a-ARF|Ink4a/Arf|MTS1|Pctr1|p16|p16(INK4a)|p16INK4a|p19<ARF>|p19ARF	cyclin dependent kinase inhibitor 2A	protein-coding	-0.130003552156981	-0.508589014509616	0.276640727243415	-0.516008256961989	-0.520586423815737	-0.507646675322249	-0.511850408984313	-0.515442929461801	-3.54636015301834	0.185860631249803	1
Merged-chr16-55950677-2	chr16	55950577	55950777	+	593.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-15598.0	NM_024218	68193.0	Mm.29221	NM_024218	ENSMUSG00000098274	Rpl24	0610008L05Rik|Bst	ribosomal protein L24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-128227083-2	chr7	128226983	128227183	+	601.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10274.0	NM_146205	233912.0	Mm.475117	NM_146205	ENSMUSG00000042178	Armc5	AW049683|BC032200	armadillo repeat containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-47529254-2	chr14	47529171	47529371	+	900.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_030236, exon 2 of 2)	exon (NM_030236, exon 2 of 2)	39163.0	NM_172599	100504663.0	Mm.287279	NM_172599	ENSMUSG00000037526	Atg14	4832427M01|Atg14L|D14Ertd114e|D14Ertd436e	autophagy related 14	protein-coding	1.75675124359936	0.868011938753167	1.39593562404435	0.84042127263148	1.60805419289137	0.871449665492373	1.85995091663628	1.36126017858598	0.672273435059722	0.627830477350365	0.980912176761026
Merged-chr19-53431179-2	chr19	53431079	53431279	+	859.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17B|LTR|ERVK	33617.0	NR_028427	381232.0	Mm.248624	NR_028427	ENSMUSG00000097636	Mirt1	4833407H14Rik|5430437C04Rik|5830416P10Rik|Gm10758	myocardial infarction associated transcript 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-48547468-4	chr9	48547368	48547568	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52125.0	NM_001004191	434402.0	Mm.386950	NM_001004191	ENSMUSG00000042293	Gm5617	EG434402	predicted gene 5617	protein-coding	3.58681874132443	2.97771033299707	2.32655517921339	2.99458215534659	3.10369414091291	3.38593947425046	2.65428339367756	2.57170034821693	-0.155493548175291	0.819228319289228	0.998431161219273
Merged-chr5-135714128-2	chr5	135714028	135714228	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008898, intron 1 of 15)	Tigger5b|DNA|TcMar-Tigger	21761.0	NR_106001	102466791.0		NR_106001	ENSMUSG00000099197	Mir7034	Gm27372|mmu-mir-7034	microRNA 7034	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-70993589-4	chr17	70993486	70993686	+	886.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001357820)	TTS (NM_001357820)	-3070.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	2.31613400519479	2.04850433886878	1.824176218475	2.91783026362196	2.33649418069774	1.22068048166284	1.19072638815523	1.78077683210399	-1.49956078006776	0.153442050315137	0.608250910479476
Merged-chr5-24604924-4	chr5	24604825	24605025	+	962.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2923.0	NM_025891	66993.0	Mm.436539	NM_025891	ENSMUSG00000028949	Smarcd3	1500001J14Rik|2210409C08Rik|BAF60C	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-42866188-3	chr1	42866099	42866299	+	910.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023514, intron 2 of 10)	RLTR9A3|LTR|ERVK	14966.0	NM_023514	69527.0	Mm.252982	NM_023514	ENSMUSG00000060679	Mrps9	2310002A08Rik|AW322516|Mrp-S9|S9mt|mg637	mitochondrial ribosomal protein S9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-116603356-4	chr7	116603247	116603447	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C-int|LTR|ERVK	98978.0	NM_001360375	53322.0	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-13962547-2	chr10	13962450	13962650	+	970.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3525.0	NM_001358783	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	-0.475018197028128	-0.628291166474278	-0.6331111701303	0.41636991545853	-0.642204481306314	-0.627210687313732	-0.632044303947393	-0.636203369824845	-3.65489003995835	0.16964111540025	1
Merged-chr6-146746751-4	chr6	146746657	146746857	+	894.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346666, intron 1 of 11)	intron (NM_001346666, intron 1 of 11)	21827.0	NM_172734	232533.0	Mm.322121	NM_172734	ENSMUSG00000001630	Stk38l	4930473A22Rik|Ndr2|Ndr54	serine/threonine kinase 38 like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-6547493-2	chr13	6547393	6547593	+	824.083313	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145131)	promoter-TSS (NM_145131)	-664.0	NM_145131	69617.0	Mm.41933	NM_145131	ENSMUSG00000021193	Pitrm1	2310012C15Rik|AA410010|MP-1|MP1|Ntup1|PreP|mKIAA1104	pitrilysin metallepetidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-45896164-2	chr19	45896064	45896264	+	682.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_198296, intron 20 of 25)	ID_B1|SINE|B4	-80101.0	NM_145703	80906.0	Mm.213204	NM_030716	ENSMUSG00000025221	Kcnip2	KChIP2	Kv channel-interacting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-48645201-4	chr13	48645108	48645308	+	992.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17828.0	NM_007526	12022.0	Mm.42241	NM_007526	ENSMUSG00000021381	Barx1	-	BarH-like homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-9643168-3	chr4	9643075	9643275	+	982.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290367, intron 1 of 22)	intron (NM_001290367, intron 1 of 22)	542.0	NM_001177853	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	3.22714593005466	3.17110390067612	2.24603563879332	2.31737498482464	2.43565096234265	2.62177069905263	1.42188482228593	2.03660231762599	-1.26700714657579	0.135536400558774	0.575023243954797
Merged-chr18-56608891-4	chr18	56608772	56608972	+	781.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20524.0	NM_026099	67343.0	Mm.87057	NM_026099	ENSMUSG00000032900	Tex43	1700065I17Rik|Tseg7	testis expressed 43	protein-coding	-1.84362945061595	-1.81329140012928	-1.67810947190254	-1.83000206547234	-1.84149977556685	-1.81130325271815	-1.67603257143677	-1.82865309133977	0.037684011990387	0.991491645451152	1
Merged-chr17-48409885-4	chr17	48409801	48410001	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357904)	promoter-TSS (NM_001357904)	-81.0	NM_010913	18044.0	Mm.4929	NM_010913	ENSMUSG00000023994	Nfya	AA407810|Cbf-b|SEZ-10|SEZ10	nuclear transcription factor-Y alpha	protein-coding	7.23445336810005	6.99654425572766	7.21657531437842	7.35760277239351	7.21197934351348	6.93208566498418	7.03524961615418	7.32928689304689	-0.0737102731043871	0.656517758162039	0.988505467120973
Merged-chr1-121136993-4	chr1	121136893	121137093	+	832.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49588.0	NR_110450	98452.0	Mm.131017	NR_038008	ENSMUSG00000097881	Celrr	AI848258|B230209K01Rik|Celr|Gm818	cerebellum expressed regulatory RNA	ncRNA	-2.18308165884198	-2.15547475440471	-2.16382331017202	-2.1706810624505	-2.18114370519566	-2.15366558754311	-2.03057248461154	-2.16945352807143	0.759018020146679	0.829933115115583	1
Merged-chr10-77974920-4	chr10	77974823	77975023	+	997.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3727.0	NM_026431	67884.0	Mm.297512	NM_026431	ENSMUSG00000020284	1810043G02Rik	AV026620|D10Jhu13e	RIKEN cDNA 1810043G02 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-108657583-2	chr6	108657488	108657688	+	649.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_104577, intron 1 of 6)	(CAGG)n|Simple_repeat|Simple_repeat	-3041.0	NM_011498	20893.0	Mm.2436	NM_011498	ENSMUSG00000030103	Bhlhe40	Bhlhb2|C130042M06Rik|CR8|Clast5|Dec1|Sharp2|Stra13|Stra14	basic helix-loop-helix family, member e40	protein-coding	0.649414134834983	0.306801245519699	0.738906275726291	0.295928994369074	0.429573577118043	0.308187246183459	0.748301055184208	0.816626258349581	0.510224744315889	0.777917533741418	1
Merged-chr11-101008286-4	chr11	101008196	101008396	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1156.0	NM_016920	11975.0	Mm.340818	NM_016920	ENSMUSG00000019302	Atp6v0a1	AA959968|ATP6a1|Atp6n1|Atp6n1a|Atpv0a1|Vpp-1|Vpp1	ATPase, H+ transporting, lysosomal V0 subunit A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-76991683-2	chr8	76991583	76991783	+	665.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083906, intron 2 of 8)	intron (NM_001083906, intron 2 of 8)	89175.0	NM_001083906	110784.0	Mm.324393	NM_001083906	ENSMUSG00000031618	Nr3c2	MR|Mlr	nuclear receptor subfamily 3, group C, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-79480346-2	chr14	79480246	79480446	+	603.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007920)	promoter-TSS (NM_007920)	-848.0	NM_007920	13709.0	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-84845055-4	chr15	84844927	84845127	+	820.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356573, intron 2 of 12)	intron (NM_001356573, intron 2 of 12)	10072.0	NM_001356573	271305.0	Mm.101022	NM_001081166	ENSMUSG00000016624	Phf21b	A730032D07Rik	PHD finger protein 21B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81317001-2	chr10	81316901	81317101	+	795.400024	f1_balb.idr|f1_c57bl6.idr	intron (NM_001293646, intron 17 of 18)	intron (NM_001293646, intron 17 of 18)	-4102.0	NM_027381	70312.0	Mm.87628	NM_027381	ENSMUSG00000034889	Cactin	2510012J08Rik	cactin, spliceosome C complex subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-34348445-3	chr7	34348352	34348552	+	751.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025948, intron 9 of 10)	intron (NM_025948, intron 9 of 10)	41253.0	NM_001360654	67070.0	Mm.276503	NM_025948	ENSMUSG00000066568	Lsm14a	2700023B17Rik|AA407828|AU017544|Tral|mRAP55A	LSM14A mRNA processing body assembly factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-102295489-4	chr11	102295428	102295628	+	662.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001098836, intron 1 of 12)	intron (NM_001098836, intron 1 of 12)	1101.0	NM_001098836	217218.0	Mm.390381	NM_001098836	ENSMUSG00000059995	Atxn7l3	E030022H21Rik	ataxin 7-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-27269432-2	chr3	27269332	27269532	+	707.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47645.0	NM_009425	22035.0	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55011980-2	chr14	55011879	55012079	+	580.5	f0_balb.idr|f1_balb.idr	Intergenic	(TTTA)n|Simple_repeat|Simple_repeat	-3475.0	NM_026890	68966.0	Mm.21214	NM_026890	ENSMUSG00000022204	Ngdn	1500001L15Rik|Ngd|neuroguidin	neuroguidin, EIF4E binding protein	protein-coding	1.96080592571332	1.77523577813145	2.32789113091381	1.36936396375254	3.51577353051175	3.43300169943856	3.63986755143431	3.13975841727015	3.04233475994161	9.15720726835868e-05	0.002906565418142
Merged-chr19-37374957-3	chr19	37374852	37375052	+	816.583313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1451.0	NM_010615	16551.0	Mm.42203	NM_010615	ENSMUSG00000012443	Kif11	Eg5|Kif8|Kifl1|Knsl1	kinesin family member 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-100711121-3	chr9	100711019	100711219	+	956.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009282, intron 2 of 33)	intron (NM_009282, intron 2 of 33)	67671.0	NM_001357265	20842.0	Mm.42135	NM_009282	ENSMUSG00000037286	Stag1	AU045003|SA-1|Scc3	stromal antigen 1	protein-coding	2.26405757515604	2.56559765624868	1.22874747095699	1.46338745251041	2.77211636791797	2.46673295058848	3.20521371220139	1.20287768281825	1.25785612174217	0.222716165750489	0.714371794563311
Merged-chr8-88690508-1	chr8	88690408	88690608	+	704.0	f1_balb.idr	Intergenic	L2|LINE|L2	-6520.0	NM_001128170	74256.0	Mm.490395	NM_173369	ENSMUSG00000036712	Cyld	2010013M14Rik|2900009M21Rik|C130039D01Rik|CDMT|CYLD1|EAC|mKIAA0849	CYLD lysine 63 deubiquitinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-83611923-2	chr8	83611833	83612033	+	845.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_018808, exon 3 of 3)	3' UTR (NM_018808, exon 3 of 3)	3385.0	NM_001308227	81489.0	Mm.282092	NM_018808	ENSMUSG00000005483	Dnajb1	0610007I11Rik|DjB1|HSPF1|Hdj1|Hsp40	DnaJ heat shock protein family (Hsp40) member B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-111055082-1	chr9	111054982	111055182	+	751.0	f0_balb.idr	3' UTR (NM_001302376, exon 3 of 3)	3' UTR (NM_001302376, exon 3 of 3)	2162.0	NM_001302377	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-96908403-2	chr7	96908303	96908503	+	671.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001310762, exon 33 of 33)	3' UTR (NM_001310762, exon 33 of 33)	-43124.0	NM_153591	244141.0	Mm.274864	NM_153591	ENSMUSG00000018995	Nars2	AI875199	asparaginyl-tRNA synthetase 2 (mitochondrial)(putative)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76671575-4	chr15	76671467	76671667	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358933)	promoter-TSS (NM_001358933)	-76.0	NM_001358933	73062.0	Mm.322901	NM_033371	ENSMUSG00000033819	Ppp1r16a	2900084E10Rik|Mypt3|R75527	protein phosphatase 1, regulatory (inhibitor) subunit 16A	protein-coding	6.50306477134033	6.50458511483291	5.98289960038422	6.22998977390995	6.21177523216517	6.2077916100305	5.91058670849917	5.91161908728052	-0.276717440511714	0.217451467554352	0.708064784073761
Merged-chr8-6842095-2	chr8	6841995	6842195	+	590.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR10A|LTR|ERVK	-1736808.0	NM_011388	20494.0	Mm.3500	NM_011388	ENSMUSG00000023073	Slc10a2	9130221J18Rik|AI605518|ASBT|IBAT|ISBT	solute carrier family 10, member 2	protein-coding	-1.8418762459921	-1.8125357239735	-1.82140854000656	-1.82869693527674	-1.56059678980999	-1.8106129477253	-1.81939992894326	-1.82739231600805	1.3620893379502	0.699511506488145	1
Merged-chr12-29713486-4	chr12	29713381	29713581	+	879.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361657, intron 3 of 24)	intron (NM_001361657, intron 3 of 24)	-27036.0	NR_046080	328075.0	Mm.447832	NR_046080	ENSMUSG00000112663	C630031E19Rik	C630031E19	RIKEN cDNA C630031E19 gene	ncRNA	4.28282022714835	4.43278733508646	4.64508713094851	4.49070624776733	3.0121249031261	3.80892216450388	2.56043466572398	3.06641035799385	-1.81990718852699	0.000210067878562617	0.00560918636571426
Merged-chr4-132793606-2	chr4	132793506	132793706	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033308, intron 1 of 5)	B2_Mm1a|SINE|B2	2758.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-153510583-4	chr1	153510478	153510678	+	980.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028749, intron 10 of 11)	intron (NM_028749, intron 10 of 11)	-22918.0	NM_007842	13211.0	Mm.20000	NM_007842	ENSMUSG00000042699	Dhx9	AI326842|Ddx9|HEL-5|NDHII|RHA|mHEL-5	DEAH (Asp-Glu-Ala-His) box polypeptide 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-17804397-5	chr13	17804326	17804526	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081058, exon 1 of 14)	exon (NM_001081058, exon 1 of 14)	671.0	NM_001081058	69562.0	Mm.193924	NM_027118	ENSMUSG00000041297	Cdk13	2310015O17Rik|Cdc2l5	cyclin-dependent kinase 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-148058757-2	chr1	148058657	148058857	+	584.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	1561070.0	NM_001145807	215378.0	Mm.441817	NM_153539	ENSMUSG00000035131	Brinp3	B830045N13Rik|Fam5c	bone morphogenetic protein/retinoic acid inducible neural specific 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-74391521-4	chr1	74391435	74391635	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153088)	promoter-TSS (NM_153088)	-74.0	NM_153088	227292.0	Mm.165042	NM_153088	ENSMUSG00000026176	Ctdsp1	GIP|NLIIF|Nif3|SCP1	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-8206416-2	chr2	8206316	8206516	+	590.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-810218.0	NM_001110231	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-47465642-4	chr19	47465547	47465747	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1236.0	NM_008018	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	4.61576843536424	4.24100745804806	4.10223873732938	3.98858596428546	4.54318215926158	4.46032838049049	4.19898017466228	4.98521626939818	0.407121752386961	0.309066259826619	0.8095277948042
Merged-chr7-38267145-1	chr7	38267045	38267245	+	586.0	f0_c57.idr	intron (NM_025390, intron 3 of 6)	intron (NM_025390, intron 3 of 6)	4203.0	NM_025390	66161.0	Mm.22284	NM_025390	ENSMUSG00000030423	Pop4	1110023P21Rik|Rpp29	processing of precursor 4, ribonuclease P/MRP family, (S. cerevisiae)	protein-coding	2.66097708108162	2.25500937852972	2.03144005266163	2.4656592767809	1.89654455318981	2.11381528847151	2.97545826156899	1.98678675780895	-0.108102543550043	0.89924011616612	0.998431161219273
Merged-chr10-111576186-3	chr10	111576068	111576268	+	826.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18105.0	NR_045344	71321.0	Mm.410785	NR_045344	ENSMUSG00000097082	4933440J02Rik	-	RIKEN cDNA 4933440J02 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-45268202-4	chr9	45268093	45268293	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008348, intron 1 of 6)	intron (NM_008348, intron 1 of 6)	956.0	NR_136903	16154.0	Mm.379327	NM_008348	ENSMUSG00000032089	Il10ra	AW553859|CDw210|CDw210a|IL-10R1|IL-10RA|Il10r|mIL-10R	interleukin 10 receptor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-86842843-2	chr3	86842775	86842975	+	743.875	f0_balb.idr|f1_balb.idr	intron (NM_001195500, intron 2 of 11)	RLTR41A2|LTR|ERV1	78009.0	NM_001195499	70762.0	Mm.44490	NM_027539	ENSMUSG00000028078	Dclk2	6330415M09Rik|AU044875|CL2|CLICK2|Click-II|Dcamkl2	doublecortin-like kinase 2	protein-coding	0.28214155622986	0.314639293579614	0.980061719588009	0.296000613073979	0.971190737573587	0.316969990331658	1.47901494192207	0.297439636712661	1.73658931021072	0.366806322433619	1
Merged-chr2-156182299-2	chr2	156182199	156182399	+	739.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2B|LTR|ERVL	-2061.0	NM_133242	170791.0	Mm.392436	NM_133242	ENSMUSG00000027620	Rbm39	1500012C14Rik|2310040E03Rik|B330012G18Rik|C79248|R75070|Rnpc2|caper	RNA binding motif protein 39	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-95685336-4	chr10	95685252	95685452	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-121206.0	NM_001358996	71207.0	Mm.24397	NM_027722	ENSMUSG00000020029	Nudt4	4933436C10Rik|DIPP-2|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P	nudix (nucleoside diphosphate linked moiety X)-type motif 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117277375-2	chr10	117277275	117277475	+	660.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_017372)	TTS (NM_017372)	4897.0	NM_017372	17105.0	Mm.45436	NM_017372	ENSMUSG00000069516	Lyz2	AI326280|Lys|Lysm|Lyzf2|Lyzs|Lzm|Lzm-s1|Lzp	lysozyme 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-40954545-2	chr14	40954445	40954645	+	613.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145928, intron 1 of 8)	intron (NM_145928, intron 1 of 8)	-6336.0	NM_001316748	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-71340214-2	chr2	71340114	71340314	+	658.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172436, intron 3 of 17)	intron (NM_172436, intron 3 of 17)	27340.0	NM_172436	78830.0	Mm.30928	NM_172436	ENSMUSG00000027010	Slc25a12	2610002D09Rik|AI839531|B230107K20Rik|BB129864	solute carrier family 25 (mitochondrial carrier, Aralar), member 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-47932446-4	chr19	47932352	47932552	+	826.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5260.0	NM_001163267	381229.0	Mm.300553	NM_001163267	ENSMUSG00000046585	Cfap58	Ccdc147|Gm969	cilia and flagella associated protein 58	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-63121486-3	chr14	63121320	63121520	+	780.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1042.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97759533-3	chr6	97759441	97759641	+	715.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47517.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-44780850-3	chr16	44780749	44780949	+	847.711121	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021325, intron 1 of 6)	intron (NM_021325, intron 1 of 6)	15113.0	NM_021325	57781.0	Mm.416152	NM_021325	ENSMUSG00000022667	Cd200r1	CD200R|Mox2r|OX2R	CD200 receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-69249392-3	chr14	69249269	69249469	+	671.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026331, intron 2 of 3)	intron (NM_026331, intron 2 of 3)	35734.0	NM_026331	67712.0	Mm.293635	NM_026331	ENSMUSG00000034248	Slc25a37	1700020E22Rik|4930513O14Rik|4930526G11Rik|AI848481|C330015G08Rik|Mfrn|Mfrn1|Mscp|frascati|mitoferrin	solute carrier family 25, member 37	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-41883087-4	chr10	41883013	41883213	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162908, intron 1 of 9)	intron (NM_001162908, intron 1 of 9)	-4326.0	NM_001013370	140742.0	Mm.139418	NM_001013370	ENSMUSG00000038332	Sesn1	1110002G11Rik|AU044290|Pa26|Sest1	sestrin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-93603151-1	chr16	93603051	93603251	+	761.0	f1_c57bl6.idr	5' UTR (NM_145482, exon 2 of 12)	5' UTR (NM_145482, exon 2 of 12)	664.0	NM_145482	224440.0	Mm.10628	NM_145482	ENSMUSG00000022948	Setd4	AY037804|C21orf18|ORF21	SET domain containing 4	protein-coding	-0.680810270979964	-0.826112929075494	-0.830929440789095	-0.833797598448495	-0.837866926465875	-0.823066979179801	0.00228296503704961	-0.833295853670773	2.43779967960921	0.40321424150816	1
Merged-chr1-86007984-4	chr1	86007879	86008079	+	919.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13963.0	NM_001122732	70060.0	Mm.196313	NM_027029	ENSMUSG00000026226	Spata3	1700011N12Rik|1700029H01Rik|4930424D10Rik|Mtsarg1|Tsarg1	spermatogenesis associated 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-68143085-1	chr18	68142985	68143185	+	635.0	f0_balb.idr	intron (NM_172631, intron 3 of 5)	L1_Mur3|LINE|L1	-84861.0	NM_001357444	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116011195-2	chr11	116011095	116011295	+	551.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_016905, exon 2 of 8)	exon (NM_016905, exon 2 of 8)	1524.0	NM_016905	14635.0	Mm.2820	NM_016905	ENSMUSG00000020766	Galk1	AA409894|GALK|Gk|Glk|Glk1	galactokinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-73590862-2	chr15	73590762	73590962	+	687.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357747, intron 2 of 7)	intron (NM_001357747, intron 2 of 7)	5664.0	NM_001168255	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118237330-4	chr11	118237220	118237420	+	823.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	11272.0	NM_001112699	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-25569881-3	chr9	25569773	25569973	+	813.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 3 of 7)	intron (NM_026189, intron 3 of 7)	88276.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32380271-3	chr2	32380147	32380347	+	725.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198001, intron 1 of 1)	intron (NM_198001, intron 1 of 1)	1668.0	NM_198001	73737.0	Mm.27608	NM_198001	ENSMUSG00000039195	1110008P14Rik	C79326	RIKEN cDNA 1110008P14 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-38604154-2	chr16	38604054	38604254	+	763.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_020260, intron 11 of 11)	intron (NM_020260, intron 11 of 11)	41340.0	NM_026407	67846.0	Mm.310476	NM_026407	ENSMUSG00000002845	Tmem39a	2610033C09Rik	transmembrane protein 39a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27033008-4	chr17	27032918	27033118	+	932.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027544, intron 4 of 5)	intron (NM_027544, intron 4 of 5)	3759.0	NM_027544	70772.0	Mm.440437	NM_027544	ENSMUSG00000048731	Ggnbp1	0610031G08Rik|mdf	gametogenetin binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-94549689-4	chr8	94549599	94549799	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153507, intron 2 of 15)	ID_B1|SINE|B4	16671.0	NM_153507	234577.0	Mm.291815	NM_153507	ENSMUSG00000034361	Cpne2	3322401K10Rik	copine II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-34259581-2	chr4	34259481	34259681	+	982.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-209514.0	NM_026293	67652.0	Mm.55848	NM_026293	ENSMUSG00000028264	Spaca1	1700124L11Rik|4930540L03Rik	sperm acrosome associated 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-75517927-4	chr10	75517824	75518024	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347201)	promoter-TSS (NM_001347201)	48.0	NM_001347201	68778.0	Mm.29382	NM_175133	ENSMUSG00000033416	Gucd1	1110038D17Rik	guanylyl cyclase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-3503957-4	chr5	3503865	3504065	+	952.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 5 of 7)	intron (NM_009873, intron 5 of 7)	-39868.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-59221542-6	chr11	59221256	59221456	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007476, intron 1 of 4)	intron (NM_007476, intron 1 of 4)	6806.0	NM_001130408	11840.0	Mm.371546	NM_007476	ENSMUSG00000048076	Arf1	-	ADP-ribosylation factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85647017-2	chr12	85646917	85647117	+	824.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39703.0	NM_016767	53314.0	Mm.6672	NM_016767	ENSMUSG00000034266	Batf	B-ATF|SFA-2	basic leucine zipper transcription factor, ATF-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-108936467-2	chr12	108936367	108936567	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177602, intron 2 of 6)	intron (NM_177602, intron 2 of 6)	42195.0	NM_177602	212198.0	Mm.342082	NM_177602	ENSMUSG00000040877	Wdr25	B930090D16Rik	WD repeat domain 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-21248565-2	chr16	21248465	21248665	+	589.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_046162, exon 5 of 5)	non-coding (NR_046162, exon 5 of 5)	7501.0	NR_106145	102465781.0		NR_106145	ENSMUSG00000098400	Mir7680	Gm27417|mmu-mir-7680	microRNA 7680	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-179875553-2	chr2	179875402	179875602	+	683.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_009867, intron 8 of 15)	intron (NM_009867, intron 8 of 15)	101144.0	NM_001081092	228980.0	Mm.235542	NM_001081092	ENSMUSG00000039117	Taf4	135kDa|AI450312|TAFII130|TAFII135|Taf2c1|Taf4a	TATA-box binding protein associated factor 4	protein-coding	2.93341441346788	2.96242131238949	1.97573706153727	2.59975516164001	2.82197024447508	2.05387948811952	2.69436090086454	2.25561313239932	-0.364283792747986	0.641622006222834	0.982599433509505
Merged-chr19-10881754-4	chr19	10881636	10881836	+	990.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134142)	promoter-TSS (NM_134142)	7.0	NM_134142	68539.0	Mm.251890	NM_134142	ENSMUSG00000034659	Tmem109	1110006I15Rik|AA958958|C77652	transmembrane protein 109	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-152355452-3	chr3	152355349	152355549	+	730.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355666, intron 1 of 21)	intron (NM_001355666, intron 1 of 21)	8971.0	NM_001076676	170822.0	Mm.258320	NM_133247	ENSMUSG00000025437	Usp33	9830169D19Rik|AA409780|Vdu1	ubiquitin specific peptidase 33	protein-coding	0.414226026703844	0.630666980824824	0.607292614352802	0.423772064077418	0.900954227953329	1.06254344957438	0.612466872048604	0.966726177840781	2.67471574697217	0.118353662499247	1
Merged-chr1-16688335-4	chr1	16688227	16688427	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016923)	promoter-TSS (NM_016923)	-129.0	NM_016923	17087.0	Mm.116844	NM_016923	ENSMUSG00000025779	Ly96	ESOP-1|MD-2|MD2	lymphocyte antigen 96	protein-coding	5.17237082117268	4.64016633997297	5.22391032433152	4.82297869877702	4.87579190552737	4.77738023128718	4.63045843982421	4.80628640260108	-0.259567797325629	0.432221015030237	0.904679012727573
Merged-chr11-16623931-3	chr11	16623880	16624080	+	790.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-115496.0	NM_001109971	20335.0	Mm.325350	NM_011343	ENSMUSG00000078974	Sec61g	-	SEC61, gamma subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-5514402-4	chr5	5514253	5514453	+	843.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001193660, exon 2 of 5)	5' UTR (NM_001193660, exon 2 of 5)	436.0	NM_001193660	64945.0	Mm.40132	NM_022890	ENSMUSG00000046798	Cldn12	-	claudin 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-107565817-3	chr1	107565703	107565903	+	738.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24203.0	NM_011459	20725.0	Mm.83909	NM_011459	ENSMUSG00000026315	Serpinb8	CAP-2|CAP2|NK10|Spi8|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 8	protein-coding	1.76198195130537	1.7157534808902	0.864205047507254	0.852197135907142	1.41636767974493	0.882886571821151	1.54745204452208	1.60660662676187	0.0264721932308927	0.984769530366092	0.998431161219273
Merged-chr7-122903711-2	chr7	122903611	122903811	+	631.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MEc|LINE|L1	66748.0	NR_045614	73951.0	Mm.389936	NR_045614		4930413G21Rik	-	RIKEN cDNA 4930413G21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80701615-1	chr10	80701515	80701715	+	644.0	f0_c57.idr	intron (NM_172457, intron 1 of 3)	intron (NM_172457, intron 1 of 3)	205.0	NM_172457	208228.0	Mm.49309	NM_172457	ENSMUSG00000003348	Mob3a	5330417K06Rik|A630029F06|AV218468|Mobkl2a	MOB kinase activator 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133541318-2	chr4	133541234	133541434	+	989.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010948, intron 1 of 7)	intron (NM_010948, intron 1 of 7)	4693.0	NM_010948	18221.0	Mm.69	NM_010948	ENSMUSG00000028851	Nudc	SIG-92|Silg92	nudC nuclear distribution protein	protein-coding	-0.520218897713393	-0.658850654993591	-0.662622845138267	-0.665536994595355	-0.51615610437144	0.101207512309645	-0.661790382567202	-0.665027661741044	2.52021723229545	0.339953070490274	1
Merged-chr16-89844763-4	chr16	89844661	89844861	+	961.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009384, intron 12 of 27)	intron (NM_009384, intron 12 of 27)	-26409.0	NM_001145887	21844.0	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-79398090-4	chr8	79397995	79398195	+	832.19165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008539, intron 1 of 6)	intron (NM_008539, intron 1 of 6)	1373.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-64267329-3	chr7	64267231	64267431	+	739.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039104, intron 26 of 26)	MTEa|LTR|ERVL-MaLR	-17232.0	NR_105844	102465226.0		NR_105844	ENSMUSG00000098910	Mir6416	Gm27746|mmu-mir-6416	microRNA 6416	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-116953548-4	chr2	116953459	116953659	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53407.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-129596570-2	chr10	129596470	129596670	+	702.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	11909.0	NM_146931	258933.0	Mm.377755	NM_146931	ENSMUSG00000052012	Olfr796	MOR269-1	olfactory receptor 796	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-13986713-4	chr10	13986574	13986774	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358782, intron 1 of 9)	intron (NM_001358782, intron 1 of 9)	20295.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-21696259-2	chr16	21696159	21696359	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1594.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166077194-2	chr2	166077093	166077293	+	653.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252579, intron 18 of 20)	intron (NM_001252579, intron 18 of 20)	78092.0	NM_001355619	72043.0	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-11115395-4	chr8	11115301	11115501	+	996.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-106971.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-98661473-4	chr15	98661367	98661567	+	945.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080981, intron 1 of 16)	intron (NM_001080981, intron 1 of 16)	1422.0	NM_001080981	74351.0	Mm.45725	NM_001080981	ENSMUSG00000003360	Ddx23	3110082M05Rik|4921506D17Rik	DEAD (Asp-Glu-Ala-Asp) box polypeptide 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-35694897-4	chr11	35694795	35694995	+	907.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011412, intron 32 of 35)	ORR1G|LTR|ERVL-MaLR	-74600.0	NM_145962	211347.0	Mm.255044	NM_145962	ENSMUSG00000018846	Pank3	-	pantothenate kinase 3	protein-coding	0.216139875890493	0.0683716168958993	0.0600681218451926	1.2017847901385	0.0442886229108803	0.0702276927481834	0.0619094407902628	0.794599000301917	-1.08219665019456	0.60646438605606	1
Merged-chr6-83006181-3	chr6	83006093	83006293	+	884.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033079, intron 6 of 9)	intron (NM_033079, intron 6 of 9)	27278.0	NM_010070	13448.0	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-15823241-2	chr9	15823141	15823341	+	642.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51315.0	NM_145712	244701.0	Mm.222631	NM_145712	ENSMUSG00000050901	Mtnr1b	Mel-1B-R|Mel1b|Mt2	melatonin receptor 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65561148-4	chr9	65561031	65561231	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153119, intron 3 of 5)	intron (NM_153119, intron 3 of 5)	18956.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-58732635-2	chr16	58732488	58732688	+	746.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_171826, exon 5 of 6)	exon (NM_171826, exon 5 of 6)	4678.0	NM_001252451	224250.0	Mm.29482	NM_171826	ENSMUSG00000022744	Cldnd1	1110019C08Rik|AA407103|AI849195|AW489850|Cldn25	claudin domain containing 1	protein-coding	0.52143698059758	0.273416881299486	0.836350643335873	0.261727213663202	0.254523029125303	0.274903079801488	0.847602777899495	0.803492013915472	0.498384731408347	0.796179768766584	1
Merged-chr19-29498104-4	chr19	29497996	29498196	+	997.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	23891.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84200942-6	chr8	84200859	84201059	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-7559.0	NR_029740	387216.0		NR_029740	ENSMUSG00000065611	Mir23a	Mirn23a|mir-23a|mmu-mir-23a	microRNA 23a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-45252629-4	chr9	45252586	45252786	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14021.0	NR_106054	102466803.0		NR_106054	ENSMUSG00000098361	Mir7086	Gm27643|mmu-mir-7086	microRNA 7086	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-42892157-3	chr17	42892058	42892258	+	805.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MMVL30-int|LTR|ERV1	-15734.0	NM_009847	12488.0	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-84193983-4	chr12	84193881	84194081	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163502)	promoter-TSS (NM_001163502)	34.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-70755131-4	chr17	70755023	70755223	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347411, intron 9 of 14)	intron (NM_001347411, intron 9 of 14)	91654.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117731410-4	chr10	117731348	117731548	+	970.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	14910.0	NM_029875	215436.0	Mm.256753	NM_029875	ENSMUSG00000060181	Slc35e3	9330166G04Rik|AI481200	solute carrier family 35, member E3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132947792-4	chr4	132947693	132947893	+	853.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25242.0	NM_001163792	230789.0	Mm.11473	NM_145553	ENSMUSG00000028878	Fam76a	-	family with sequence similarity 76, member A	protein-coding	1.50413504517433	1.65847745016358	2.22477011875486	1.84897105903661	1.5143051982613	2.10589100399286	2.03592647501395	1.85808749461868	0.160953433012795	0.871097365235761	0.998431161219273
Merged-chr11-45539636-3	chr11	45539521	45539721	+	801.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-268462.0	NR_045876	100009664.0	Mm.415439	NR_045876		F630206G17Rik	-	RIKEN cDNA F630206G17 gene	ncRNA	2.48848286505517	2.69426835144655	1.85329519057416	2.44231465749426	2.42757437863087	1.92235615964961	2.18129490388653	2.11782214850275	-0.542465446660598	0.520381648102999	0.947641799425091
Merged-chr13-111418216-4	chr13	111418098	111418298	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	71929.0	NM_028487	73274.0	Mm.57286	NM_028487	ENSMUSG00000032745	Gpbp1	1700034P14Rik|AU019836|D230035M11Rik|Gpbp|mGPBP	GC-rich promoter binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-6632667-3	chr13	6632567	6632767	+	868.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019703, intron 2 of 21)	intron (NM_019703, intron 2 of 21)	16104.0	NM_019703	56421.0	Mm.273874	NM_019703	ENSMUSG00000021196	Pfkp	1200015H23Rik|9330125N24Rik|ATP-PFK|PFK-C|PFK-P	phosphofructokinase, platelet	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-112259590-3	chr13	112259432	112259632	+	593.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28919.0	NM_001168403	77318.0	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	1.44180002780024	1.97430287391126	1.89777784531246	0.871258597824423	1.04060984760302	1.14612246025945	1.58990049534542	1.08364315358826	-1.36629640211937	0.277112821188025	0.781366007374687
Merged-chr6-108664081-2	chr6	108663981	108664181	+	694.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011498, intron 4 of 4)	intron (NM_011498, intron 4 of 4)	-3147.0	NR_104577	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-9947491-2	chr3	9947391	9947591	+	580.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65094.0	NM_001272097	16592.0	Mm.741	NM_010634	ENSMUSG00000027533	Fabp5	E-FABP|Fabpe|Klbp|PA-FABP|mal1	fatty acid binding protein 5, epidermal	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-37653684-2	chr16	37653584	37653784	+	722.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026610, intron 1 of 2)	intron (NM_026610, intron 1 of 2)	684.0	NM_026610	68194.0	Mm.379154	NM_026610	ENSMUSG00000022820	Ndufb4	0610006N12Rik|1300010H20Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-59332503-6	chr4	59332384	59332584	+	815.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163288, intron 13 of 16)	intron (NM_001163288, intron 13 of 16)	72433.0	NR_105031	101055769.0	Mm.421401	NR_105031		Gm12596	-	predicted gene 12596	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-7810136-4	chr10	7810031	7810231	+	791.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026141, intron 10 of 12)	intron (NM_026141, intron 10 of 12)	17237.0	NM_026141	67418.0	Mm.38927	NM_026141	ENSMUSG00000015757	Ppil4	3732410E19Rik|3830425H19Rik|AI788954|AW146233|PPIase	peptidylprolyl isomerase (cyclophilin)-like 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-55330483-2	chr13	55330390	55330590	+	745.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_016662)	promoter-TSS (NM_016662)	-760.0	NM_016662	17121.0	Mm.20350	NM_016662	ENSMUSG00000021485	Mxd3	4631412E13Rik|Mad3|bHLHc13	Max dimerization protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69410854-4	chr11	69410728	69410928	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001017426, intron 1 of 22)	CpG	2847.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-117139409-4	chr4	117139306	117139506	+	862.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-5443.0	NM_001313916	12795.0	Mm.259022	NM_013807	ENSMUSG00000028680	Plk3	Cnk|Fnk|PLK-3|PRK	polo like kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-53846160-2	chr1	53846060	53846260	+	585.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001883, intron 21 of 28)	intron (NM_001001883, intron 21 of 28)	-3264.0	NR_106149	102465783.0		NR_106149	ENSMUSG00000098443	Mir7681	Gm27806|mmu-mir-7681	microRNA 7681	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46551916-4	chr8	46551824	46552024	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027973)	promoter-TSS (NM_027973)	-145.0	NM_027973	71876.0	Mm.22108	NM_027973	ENSMUSG00000031629	Cenpu	1700029A22Rik|Mlf1ip	centromere protein U	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-71006282-4	chr12	71006167	71006367	+	983.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045055, intron 3 of 3)	intron (NR_045055, intron 3 of 3)	9556.0	NR_045056	73204.0	Mm.363770	NR_045055	ENSMUSG00000085622	3110056K07Rik	4921536K06Rik	RIKEN cDNA 3110056K07 gene	ncRNA	1.85864171475178	2.24001520560172	2.29892054960941	2.23372855241152	2.92823465597301	2.63580925966261	2.64656789715104	1.34757204635723	0.794494181089184	0.378008309752354	0.871187225798265
Merged-chr4-70534333-2	chr4	70534233	70534433	+	678.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_172694, exon 1 of 6)	exon (NM_172694, exon 1 of 6)	595.0	NM_172694	230316.0	Mm.251188	NM_172694	ENSMUSG00000039270	Megf9	4933405H16Rik|9630025C07|Egfl5|mKIAA0818	multiple EGF-like-domains 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81175188-4	chr10	81175104	81175304	+	979.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1427.0	NM_007907	13629.0	Mm.2903	NM_007907	ENSMUSG00000034994	Eef2	Ef-2	eukaryotic translation elongation factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91921402-4	chr2	91921283	91921483	+	813.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007699)	promoter-TSS (NM_007699)	-806.0	NM_007699	12672.0	Mm.330405	NM_007699	ENSMUSG00000040495	Chrm4	Chrm-4|M4	cholinergic receptor, muscarinic 4	protein-coding	0.992515435995721	1.61156860480698	2.04462119070416	1.49871353297136	0.999515488270608	1.86757614358763	0.843843049676113	0.82900440400103	-1.25544991204398	0.346044693887352	0.846854277385188
Merged-chr11-86734383-4	chr11	86734297	86734497	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003908, intron 2 of 31)	intron (NM_001003908, intron 2 of 31)	23170.0	NM_001003908	67300.0	Mm.254588	NM_001003908	ENSMUSG00000047126	Cltc	3110065L21Rik|CHC|R74732	clathrin, heavy polypeptide (Hc)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-79742152-4	chr15	79742054	79742254	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045069)	promoter-TSS (NR_045069)	382.0	NM_194342	223697.0	Mm.202715	NM_194342	ENSMUSG00000042524	Sun2	B230369L08Rik|C030011B15|Unc84b	Sad1 and UNC84 domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-114987291-4	chr4	114987193	114987393	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025647)	promoter-TSS (NM_025647)	-65.0	NM_025647	66588.0	Mm.294159	NM_025647	ENSMUSG00000028719	Cmpk1	0610011D08Rik|CK|Cmpk|UMP-CMPk	cytidine monophosphate (UMP-CMP) kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-112394184-4	chr2	112394107	112394307	+	901.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024254, intron 1 of 9)	L2|LINE|L2	14996.0	NM_024254	72425.0	Mm.425091	NM_024254	ENSMUSG00000027132	Katnbl1	2410042D21Rik|AA166487|AA473307|AI467442	katanin p80 subunit B like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53217145-2	chr4	53217045	53217245	+	562.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29051.0	NR_040665	78180.0	Mm.243847	NR_040665	ENSMUSG00000086947	4930522O17Rik	-	RIKEN cDNA 4930522O17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-115309671-3	chr9	115309570	115309770	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024222, intron 1 of 15)	CpG	751.0	NM_024222	68292.0	Mm.296158	NM_024222	ENSMUSG00000032437	Stt3b	1300006C19Rik|Simp	STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae)	protein-coding	2.67542978784385	2.91784002477448	2.81791771696511	3.23244264990485	1.31284369035426	2.48513681557015	2.09406549148929	1.84607047498346	-2.01232401601691	0.0164299704916557	0.154730601223615
Merged-chr5-99414502-4	chr5	99414388	99414588	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 2 of 3)	intron (NR_030692, intron 2 of 3)	-161561.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-105124047-2	chr11	105123947	105124147	+	555.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2378.0	NM_172567	52686.0	Mm.270091	NM_172567	ENSMUSG00000020691	Mettl2	2810438F06Rik|AW493404|C130031G21Rik|D11Ertd768e|METL|PSENIP1	methyltransferase like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-106556353-4	chr8	106556258	106556458	+	734.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007665, exon 16 of 16)	3' UTR (NM_007665, exon 16 of 16)	-30785.0	NR_045470	68692.0	Mm.416843	NR_045470	ENSMUSG00000099139	1110028F18Rik	-	RIKEN cDNA 1110028F18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-95033203-4	chr13	95033120	95033320	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172263, intron 16 of 19)	intron (NM_172263, intron 16 of 19)	56876.0	NM_172590	218460.0	Mm.33856	NM_172590	ENSMUSG00000042015	Wdr41	B830029I03Rik|MSTP048	WD repeat domain 41	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-13561120-3	chr3	13561015	13561215	+	837.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357034, intron 1 of 7)	L1_Mus2|LINE|L1	88316.0	NM_001357036	76897.0	Mm.422625	NM_178631	ENSMUSG00000039717	Ralyl	0710005M24Rik	RALY RNA binding protein-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-9631230-3	chr4	9631131	9631331	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177856, intron 4 of 4)	intron (NM_001177856, intron 4 of 4)	12486.0	NM_001177853	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-128321361-4	chr7	128321259	128321459	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23228.0	NM_145590	233913.0	Mm.220880	NM_145590	ENSMUSG00000030780	BC017158	-	cDNA sequence BC017158	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-84769445-2	chr3	84769435	84769635	+	724.75	f0_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46042.0	NM_001177773	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	-0.265425349508297	-0.387143044308748	-0.390689453964131	-0.393412365981242	-0.0407652442486746	0.0844320317188975	-0.221348470489084	-0.392937512903457	2.58484174424727	0.278490200801237	1
Merged-chr7-139247672-4	chr7	139247580	139247780	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033206)	promoter-TSS (NM_001033206)	-802.0	NM_001033206	101631.0	Mm.334300	NM_001033206	ENSMUSG00000060260	Pwwp2b	AI594893|D7Ertd517e|D930023J19Rik|Pwwp2	PWWP domain containing 2B	protein-coding	0.454330697413459	0.557438581936962	0.759516039546265	0.203813901363419	0.197463225379549	0.701006494556862	0.209602593119195	0.365636645858572	-0.856652180535006	0.648059141265329	1
Merged-chr15-59712804-2	chr15	59712704	59712904	+	567.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	64150.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-87561128-4	chr17	87561030	87561230	+	801.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74849.0	NM_008532	17075.0	Mm.4259	NM_008532	ENSMUSG00000045394	Epcam	CD326|EGP|EGP-2|Egp314|Ep-CAM|EpCAM1|GA733-2|Ly74|TROP1|Tacsd1|Tacstd1|gp40	epithelial cell adhesion molecule	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-15537702-4	chr19	15537608	15537808	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16D|LTR|ERVL	386914.0	NM_001205339	107272.0	Mm.289936	NM_177420	ENSMUSG00000024640	Psat1	D8Ertd814e|EPIP|PSA|Psat	phosphoserine aminotransferase 1	protein-coding	-1.43172712806865	-1.3992492906874	-1.40907085678131	-1.41713858359971	-0.932192548427885	-1.39712091634321	-1.40684746950024	-1.41569446435649	2.19283191591698	0.528233640655333	1
Merged-chr2-26483394-4	chr2	26483284	26483484	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008714, intron 4 of 33)	intron (NM_008714, intron 4 of 33)	-13265.0	NR_105962	102465602.0		NR_105962	ENSMUSG00000098548	Mir6996	Gm27531|mmu-mir-6996	microRNA 6996	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-38963824-1	chr18	38963724	38963924	+	542.0	f1_balb.idr	intron (NM_001033789, intron 4 of 4)	MLT2B2|LTR|ERVL	-29321.0	NM_001361073	71302.0	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding	0.628104399678125	1.6626938598109	1.2272290331507	1.53328933401265	0.63112830203816	0.678120451923732	1.7049651473489	0.65020970550987	-1.08516931131728	0.4945078872007	0.935679785535167
Merged-chr5-53199811-2	chr5	53199711	53199911	+	680.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172710, intron 2 of 23)	intron (NM_172710, intron 2 of 23)	13641.0	NM_172710	231238.0	Mm.235020	NM_172710	ENSMUSG00000029189	Sel1l3	2310045A20Rik|AI429585|mKIAA0746	sel-1 suppressor of lin-12-like 3 (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-58423098-4	chr1	58422986	58423186	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042634, intron 1 of 12)	intron (NM_001042634, intron 1 of 12)	1002.0	NR_027854	12747.0	Mm.1761	NM_009905	ENSMUSG00000026034	Clk1	STY	CDC-like kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-104611456-4	chr13	104611365	104611565	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	205488.0	NM_026072	67285.0	Mm.235398	NM_026072	ENSMUSG00000021715	Cwc27	3110009E13Rik|NY-CO-10|Sdccag10	CWC27 spliceosome-associated protein	protein-coding	2.68781386098695	2.15536690737786	2.38753095238898	3.51070640185636	2.20982996029806	3.13281118443862	1.3962138259471	2.02818206520946	-0.879715526299405	0.317625913059523	0.820928684076605
Merged-chr10-80170171-2	chr10	80170071	80170271	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_152857, intron 3 of 7)	intron (NR_152857, intron 3 of 7)	2332.0	NR_152857	12696.0	Mm.17898	NM_007705	ENSMUSG00000045193	Cirbp	Cirp|R74941	cold inducible RNA binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-84465064-4	chr1	84464961	84465161	+	972.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152915, intron 7 of 12)	intron (NM_152915, intron 7 of 12)	-180416.0	NM_001003948	98496.0	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4|P-CLI1	phosphotyrosine interaction domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-121416729-2	chr2	121416619	121416819	+	867.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007952, intron 1 of 12)	intron (NM_007952, intron 1 of 12)	2817.0	NM_007952	14827.0	Mm.263177	NM_007952	ENSMUSG00000027248	Pdia3	58kDa|ERp57|ERp60|ERp61|Erp|Grp58|PDI|PDI-Q2|PI-PLC|PLC[a]|Plca	protein disulfide isomerase associated 3	protein-coding	1.84449669617267	2.48000999614584	2.68985240746703	2.84021332061866	1.99635379745787	1.67280451220887	1.83326139954107	2.53984490270845	-1.04865200983113	0.233218857896084	0.728474210976025
Merged-chr5-136986342-2	chr5	136986286	136986486	+	819.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011962)	promoter-TSS (NM_011962)	518.0	NM_001310747	70103.0	Mm.273147	NM_027318	ENSMUSG00000059518	Znhit1	2700001K05Rik|ZNFN4A1	zinc finger, HIT domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94105746-3	chr10	94105769	94105969	+	926.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053072, intron 7 of 20)	intron (NM_053072, intron 7 of 20)	-42062.0	NM_011629	22025.0	Mm.107483	NM_011629	ENSMUSG00000005897	Nr2c1	4831444H07Rik|80.3|Eenr|TR2|Tr2-11	nuclear receptor subfamily 2, group C, member 1	protein-coding	1.29552072900284	0.412816478974436	0.404135258512952	0.857354701124638	0.387769836520191	0.950829203175305	0.406056194834507	0.863808126870801	-0.645646923466577	0.721387663042492	1
Merged-chr13-47151255-1	chr13	47151155	47151355	+	813.5	f0_balb.idr	intron (NM_146042, intron 1 of 7)	BLACKJACK|DNA|hAT-Blackjack	-2585.0	NR_126083	319467.0	Mm.447279	NR_126083	ENSMUSG00000114961	A930002C04Rik	-	RIKEN cDNA A930002C04 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124640242-2	chr6	124640142	124640342	+	673.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4157.0	NM_173864	317677.0	Mm.483270	NM_173864	ENSMUSG00000079343	C1s2	C1sb|EG317677|Gm5077	complement component 1, s subcomponent 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-72333285-2	chr18	72333185	72333385	+	672.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007831, intron 1 of 28)	intron (NM_007831, intron 1 of 28)	17784.0	NM_007831	13176.0	Mm.167882	NM_007831	ENSMUSG00000060534	Dcc	C030036D22Rik|Igdcc1	deleted in colorectal carcinoma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59645350-2	chr15	59645250	59645450	+	630.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2c|LINE|L2	-3304.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-108629748-4	chr12	108629654	108629854	+	985.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163395, intron 1 of 12)	RLTR14|LTR|ERV1	-5999.0	NM_001163396	14026.0	Mm.238841	NM_007965	ENSMUSG00000021262	Evl	AI528774|b2b2600Clo	Ena-vasodilator stimulated phosphoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-62152358-4	chr15	62152244	62152444	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_003368, intron 3 of 8)	intron (NR_003368, intron 3 of 8)	67107.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3746312-4	chr4	3746202	3746402	+	849.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 6 of 12)	intron (NM_001111096, intron 6 of 12)	31338.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-121739840-4	chr10	121739735	121739935	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359720)	promoter-TSS (NM_001359720)	-95.0	NM_001359720	270802.0	Mm.209172	NM_173022	ENSMUSG00000053684	BC048403	E030027L10	cDNA sequence BC048403	protein-coding	2.01209957328317	3.41258401728093	1.48830152089703	3.13470278892885	2.44867403093143	3.50857218079801	2.53440832671225	3.07316302181435	0.387102737834479	0.638321082614628	0.982599433509505
Merged-chr6-25809953-2	chr6	25809853	25810053	+	723.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133931)	promoter-TSS (NM_133931)	-727.0	NM_133931	101185.0	Mm.274589	NM_133931	ENSMUSG00000029676	Pot1a	1500031H18Rik|AI851169|Pot1	protection of telomeres 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-112634026-3	chr12	112633993	112634193	+	857.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007421, intron 5 of 12)	intron (NM_007421, intron 5 of 12)	-10735.0	NM_001161737	30954.0	Mm.289812	NM_013929	ENSMUSG00000064326	Siva1	CD27bp|Siva	SIVA1, apoptosis-inducing factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-84034535-2	chr6	84034435	84034635	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310152, intron 1 of 53)	intron (NM_001310152, intron 1 of 53)	15149.0	NM_021469	26903.0	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75459326-4	chr11	75459244	75459444	+	953.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER20|DNA|hAT-Charlie	-2195.0	NR_030711	100042498.0	Mm.482242	NR_030711	ENSMUSG00000085148	Mir22hg	2210403K04Rik|mir-22	Mir22 host gene (non-protein coding)	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-19979518-4	chr11	19979424	19979624	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033523, intron 1 of 5)	intron (NM_033523, intron 1 of 5)	55082.0	NM_033523	114716.0	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-53853157-2	chr11	53853057	53853257	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_033332, intron 1 of 3)	B3|SINE|B2	6099.0	NR_033332	622459.0	Mm.479656	NR_033332	ENSMUSG00000081769	Gm12216	602-19-115	predicted gene 12216	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-119896924-2	chr7	119896824	119897024	+	717.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029610, intron 1 of 3)	intron (NM_029610, intron 1 of 3)	632.0	NM_029610	73919.0	Mm.46381	NM_029610	ENSMUSG00000030922	Lyrm1	1110065L10Rik|2310004B22Rik|4930404J24Rik	LYR motif containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-155215842-2	chr4	155215741	155215941	+	818.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011385, intron 1 of 6)	intron (NM_011385, intron 1 of 6)	6694.0	NM_011385	20481.0	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	-1.50525340993932	-1.47388616340953	-1.48337187766321	-1.34191013583787	-1.3545969562444	-1.47183056956015	-1.48122451987711	-1.34051539875028	0.708891105143862	0.826881111389938	1
Merged-chr10-99267319-2	chr10	99267219	99267419	+	729.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_026268, exon 3 of 3)	3' UTR (NM_026268, exon 3 of 3)	4088.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124923409-2	chr6	124923309	124923509	+	902.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_152158, intron 1 of 1)	intron (NR_152158, intron 1 of 1)	-5463.0	NM_026988	69202.0	Mm.142187	NM_026988	ENSMUSG00000030122	Ptms	2610009E16Rik	parathymosin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-130012276-3	chr7	130012167	130012367	+	687.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50102.0	NR_046077	100043150.0	Mm.334264	NR_046077	ENSMUSG00000108504	Gm4265	-	predicted gene 4265	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-6100495-2	chr2	6100395	6100595	+	685.583374	f1_balb.idr|f1_c57bl6.idr	exon (NM_001159657, exon 4 of 4)	exon (NM_001159657, exon 4 of 4)	29690.0	NM_144883	227545.0	Mm.133542	NM_144883	ENSMUSG00000045319	Proser2	5430407P10Rik|AU067770	proline and serine rich 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-114163107-4	chr7	114162955	114163155	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-45274.0	NM_025846	66922.0	Mm.276572	NM_025846	ENSMUSG00000055723	Rras2	2610016H24Rik|C86394|TC21	related RAS viral (r-ras) oncogene 2	protein-coding	2.40584973134412	3.32245982303588	2.99427158114705	3.12133779256085	1.73754174661115	2.33281695805178	2.08440064605317	1.34196879190682	-2.31861240339935	0.00589410703991002	0.0757687459980434
Merged-chr8-3687846-2	chr8	3687746	3687946	+	708.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253745, intron 7 of 9)	intron (NM_001253745, intron 7 of 9)	2544.0	NM_001253739	14128.0	Mm.1233	NM_013517	ENSMUSG00000005540	Fcer2a	CD23|Fce2|Fcer2|Ly-42	Fc receptor, IgE, low affinity II, alpha polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-50833554-2	chr14	50833454	50833654	+	608.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_009351, exon 43 of 55)	exon (NM_009351, exon 43 of 55)	25638.0	NM_009632	11546.0	Mm.281482	NM_009632	ENSMUSG00000036023	Parp2	ADPRT-2|ARTD2|Adprt2|Adprtl2|Aspartl2|C78626|PARP-2|mPARP-2|pADPRT-2	poly (ADP-ribose) polymerase family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-23790599-3	chr17	23790495	23790695	+	796.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-4379.0	NM_001357140	76917.0	Mm.269613	NM_029798	ENSMUSG00000023911	Flywch2	2810417J12Rik|3010014L17Rik|AW548203	FLYWCH family member 2	protein-coding	2.6900122891439	3.34299076841388	1.77095994346003	3.07552231732023	2.71253074146783	1.84236143188809	2.74082031921404	2.75712591512302	-0.528537615503073	0.507069424188727	0.943006780176123
Merged-chr5-140386377-2	chr5	140386277	140386477	+	626.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172277, intron 1 of 10)	intron (NM_172277, intron 1 of 10)	2931.0	NM_172277	231834.0	Mm.27098	NM_172277	ENSMUSG00000029560	Snx8	B130023O14Rik	sorting nexin 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-32713500-2	chr19	32713400	32713600	+	598.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	-1202.0	NM_026487	67979.0	Mm.27123	NM_026487	ENSMUSG00000013662	Atad1	4921525H23Rik|AW107648|Thorase	ATPase family, AAA domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101388224-2	chr7	101388124	101388324	+	751.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_001040111, intron 10 of 33)	intron (NM_001040111, intron 10 of 33)	2698.0	NM_027180	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-12171640-6	chr4	12171561	12171761	+	888.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310743, intron 1 of 7)	CpG	354.0	NM_001310743	68099.0	Mm.25340	NM_026558	ENSMUSG00000028218	Fam92a	6720467C03Rik|Fam92a1	family with sequence similarity 92, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-9707825-2	chr3	9707725	9707925	+	627.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_053182, intron 2 of 7)	intron (NM_053182, intron 2 of 7)	-97740.0	NM_133218	170753.0	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35241120-4	chr17	35241032	35241232	+	993.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019693)	promoter-TSS (NM_019693)	-614.0	NM_019693	53817.0	Mm.439827	NM_019693	ENSMUSG00000019432	Ddx39b	0610030D10Rik|AI428441|Bat-1|Bat1|Bat1a|D17H6S81E|D17H6S81E-1|D6S81Eh	DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B	protein-coding	1.57303377421545	1.95826286139374	2.51725390111069	2.69250670645577	2.41663263154282	1.2677309788277	1.23378194452926	2.91155069561222	-0.175472865887477	0.868133735361839	0.998431161219273
Merged-chr1-152808406-4	chr1	152808344	152808544	+	935.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010877, intron 2 of 15)	intron (NM_010877, intron 2 of 15)	8291.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-61369622-3	chr9	61369538	61369738	+	892.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2728.0	NM_001083928	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-99269916-2	chr5	99269811	99270011	+	770.5	f0_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16984.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	1.87721821460391	1.78645355967777	1.58626206932125	1.98685305265174	2.12313073947342	1.04271986353121	1.25183107349367	1.00629480639921	-1.06295818565576	0.38060265374299	0.872285472406141
Merged-chr19-41318959-2	chr19	41318891	41319091	+	662.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 8 of 16)	intron (NM_031376, intron 8 of 16)	-54987.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	0.504294847420256	1.20171260076241	0.721231198968382	1.46564275042002	0.93200342413979	0.753552653837168	0.727095488998589	0.518626710701573	-1.47140743792068	0.349069024996691	0.849519302618722
Merged-chr10-77604181-2	chr10	77604015	77604215	+	723.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1982.0	NM_001301672	20610.0	Mm.24433	NM_019929	ENSMUSG00000020265	Sumo3	2810014B19Rik|D10Ertd345e|SMT3A|SUMO-3|Smt3h1	small ubiquitin-like modifier 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-32306591-4	chr12	32306491	32306691	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-72198.0	NM_001162903	72123.0	Mm.341352	NM_028111	ENSMUSG00000090946	Ccdc71l	2010109K11Rik|AV375874	coiled-coil domain containing 71 like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30412867-4	chr7	30412748	30412948	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011662)	promoter-TSS (NM_011662)	-940.0	NM_011662	22177.0	Mm.46301	NM_011662	ENSMUSG00000030579	Tyrobp	DAP12|KARAP|Ly83	TYRO protein tyrosine kinase binding protein	protein-coding	6.6792320164805	6.57000381828257	6.66320898410157	6.86370686212756	6.37264704069526	6.15149080745808	6.5614632776102	6.89940065764425	-0.184982385134374	0.369398828287783	0.863273693376865
Merged-chr4-63557923-3	chr4	63557833	63558033	+	806.06665	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356354)	promoter-TSS (NM_001356354)	-830.0	NM_001356355	230279.0	Mm.41523	NM_144905	ENSMUSG00000045917	Tmem268	6330416G13Rik|AW492431|bM230C2.2	transmembrane protein 268	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-157095457-5	chr2	157095271	157095471	+	905.994263	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177439, intron 5 of 5)	intron (NM_001177439, intron 5 of 5)	8316.0	NM_001177439	383766.0	Mm.480305	NM_001177439	ENSMUSG00000074628	Tldc2	Gm1332	TBC/LysM associated domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34204074-2	chr17	34203974	34204174	+	752.416626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011530)	promoter-TSS (NM_011530)	-405.0	NM_011530	21355.0	Mm.14814	NM_011530	ENSMUSG00000024339	Tap2	ABC18|AI462429|APT2|Abcb3|Ham-2|Ham2|MTP2|PSF2|RING11|Tap-2|Y1|jas	transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)	protein-coding	-0.799902186879656	-0.429140330751189	-0.216478800392019	-0.795762741921423	-0.799286726000797	-0.788015448494407	-0.792553219016262	-0.795326855369012	-3.13842637334584	0.284211766590417	1
Merged-chr6-43644039-3	chr6	43643944	43644144	+	725.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013861, intron 2 of 8)	intron (NM_013861, intron 2 of 8)	22234.0	NM_013861	29807.0	Mm.320979	NM_013861	ENSMUSG00000029735	Tpk1	-	thiamine pyrophosphokinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-126030896-4	chr4	126030820	126031020	+	841.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252651, intron 4 of 14)	intron (NM_001252651, intron 4 of 14)	6261.0	NM_001252651	12986.0	Mm.271701	NM_007782	ENSMUSG00000028859	Csf3r	Cd114|Csfgr|G-CSF-R|G-CSFR	colony stimulating factor 3 receptor (granulocyte)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139255079-2	chr5	139254979	139255179	+	746.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163316, intron 1 of 8)	intron (NM_001163316, intron 1 of 8)	1582.0	NM_001163316	67604.0	Mm.270137	NM_026269	ENSMUSG00000025858	Get4	1110007L15Rik|AW412535|Cee	golgi to ER traffic protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-34132148-6	chr10	34132035	34132235	+	744.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4163.0	NM_175449	215900.0	Mm.34479	NM_175449	ENSMUSG00000046031	Fam26f	A630077B13Rik|Calhm6	family with sequence similarity 26, member F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152532900-2	chr1	152532800	152533000	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 13 of 17)	intron (NM_016846, intron 13 of 17)	92317.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75587671-4	chr11	75587596	75587796	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008850)	promoter-TSS (NM_008850)	-383.0	NM_008850	18738.0	Mm.3128	NM_008850	ENSMUSG00000017781	Pitpna	Pitpn|vb|vibrator	phosphatidylinositol transfer protein, alpha	protein-coding	3.27683626319962	3.87279652590593	3.92331568738817	3.52073919307708	2.53842490296842	3.12970808008374	3.13422741820917	2.67650680921916	-1.27584372266505	0.0287365657835392	0.230089049602083
Merged-chr9-106202590-2	chr9	106202514	106202714	+	796.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011876)	promoter-TSS (NM_011876)	-494.0	NM_011876	23999.0	Mm.274346	NM_011876	ENSMUSG00000023277	Twf2	A6-related|AU014993|Ptk9l|Ptk9r	twinfilin actin binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-40293027-2	chr4	40292927	40293127	+	601.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MuRRS4-int|LTR|ERV1	-13606.0	NM_001033305	230075.0	Mm.1103	NM_001033305	ENSMUSG00000071014	Ndufb6	CI-B17|Gm137	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115929966-4	chr11	115929844	115930044	+	909.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130454, intron 2 of 18)	intron (NM_130454, intron 2 of 18)	3548.0	NM_130454	170472.0	Mm.379351	NM_130454	ENSMUSG00000020752	Recql5	RecQ5|Recq5b|Recql5b	RecQ protein-like 5	protein-coding	3.04193934023028	3.48645097885155	2.99801835247589	3.36074776963791	3.2913708261279	3.51057818539581	3.12714093320911	3.03321289522519	0.0274045819732105	0.962180230543992	0.998431161219273
Merged-chr7-99173127-3	chr7	99173051	99173251	+	875.1237789999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026384, intron 1 of 7)	intron (NM_026384, intron 1 of 7)	9562.0	NM_026384	67800.0	Mm.180189	NM_026384	ENSMUSG00000030747	Dgat2	0610010B06Rik|ARAT|DGAT-2	diacylglycerol O-acyltransferase 2	protein-coding	2.32769847657466	2.48726261322441	2.10860071117316	2.45425028952498	2.45053095078031	3.03830136267065	3.16318406778222	1.67695576964655	0.739515012174117	0.365193808112678	0.861036332257394
Merged-chr2-167352719-4	chr2	167352635	167352835	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1K|LTR|ERVL-MaLR	-3557.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-45218878-2	chr14	45218778	45218978	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027518)	promoter-TSS (NM_027518)	547.0	NM_172597	70561.0	Mm.28129	NM_172597	ENSMUSG00000021830	Txndc16	5730420B22Rik|C77647	thioredoxin domain containing 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25205944-4	chr7	25205866	25206066	+	872.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207677, intron 4 of 4)	MIRb|SINE|MIR	11759.0	NR_106015	102466794.0		NR_106015	ENSMUSG00000098325	Mir7048	Gm27274|mmu-mir-7048	microRNA 7048	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-105978695-3	chr1	105978550	105978750	+	829.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_151625)	TTS (NR_151625)	11632.0	NR_151625	635504.0	Mm.359717	NR_151625		Gm7160	EG635504	predicted gene 7160	ncRNA	2.09013098975352	1.15990572775573	1.8525215049491	2.02370043392181	2.32437260374732	1.16480003938025	1.86718637415839	1.67554209221957	0.00319881215653805	0.997726757006493	0.999337068446453
Merged-chr6-97495285-2	chr6	97495183	97495383	+	632.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	-7463.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	1.01230250201046	1.46553711419348	0.695727297949241	0.683401301612211	1.0216307607695	1.917992472716	1.64905204899707	0.685573047787408	1.51708115647855	0.298607452134283	0.800257675359925
Merged-chr8-119887327-2	chr8	119887227	119887427	+	820.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-23033.0	NM_009462	22224.0	Mm.256910	NM_009462	ENSMUSG00000031826	Usp10	2610014N07Rik|UBPO|Uchrp|mKIAA0190	ubiquitin specific peptidase 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100508837-4	chr7	100508735	100508935	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153527, intron 3 of 7)	URR1B|DNA|hAT-Charlie	5980.0	NM_153527	69387.0	Mm.278554	NM_153527	ENSMUSG00000030708	Dnajb13	1700014P03Rik|Tsarg	DnaJ heat shock protein family (Hsp40) member B13	protein-coding	4.32189202894831	3.48262565145952	3.96565775832707	4.1592468890063	3.81865834963049	4.38218555468851	4.40712739797215	4.23213237663474	0.263316369874642	0.548774405956337	0.958300782537131
Merged-chr12-110736787-2	chr12	110736687	110736887	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1110.0	NM_027149	69641.0	Mm.475762	NM_027149	ENSMUSG00000037957	Wdr20	2310040A13Rik|AI549910|Wdr20a	WD repeat domain 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-37614451-2	chr9	37614351	37614551	+	795.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001324545)	promoter-TSS (NM_001324545)	604.0	NM_011734	22619.0	Mm.196345	NM_011734	ENSMUSG00000001942	Siae	LSE|Ysg2	sialic acid acetylesterase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-162564419-2	chr1	162564319	162564519	+	552.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6096.0	NM_001356527	53330.0	Mm.10699	NM_016796	ENSMUSG00000026696	Vamp4	D1Ertd147e|Vamp-4	vesicle-associated membrane protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-145101162-3	chr6	145101125	145101325	+	931.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14411.0	NM_001281980	16970.0	Mm.843	NM_008511	ENSMUSG00000030263	Lrmp	D6Int3|D6Int4|D6Int5|D6Int7|D6Int8|Jaw1	lymphoid-restricted membrane protein	protein-coding	1.86357667534538	2.10477717764174	2.02992000556028	1.19097640943139	2.39769061866519	2.7921018810802	2.77433303171496	1.19571209973261	1.38314809484218	0.178077315995181	0.648362827425708
Merged-chr13-84867584-2	chr13	84867484	84867684	+	658.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-321801.0	NM_001347587	66671.0	Mm.18474	NM_023243	ENSMUSG00000021548	Ccnh	6330408H09Rik|AI661354|AV102684|AW538719	cyclin H	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-37482237-3	chr13	37482144	37482344	+	629.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	136899.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	2.02350055414281	0.958208164553114	0.936123297215911	1.14936914105085	2.18621967880282	1.77508306493656	0.941060321233799	2.23850265989016	1.48709434334581	0.254287936133486	0.751985668675266
Merged-chr10-46106837-2	chr10	46106737	46106937	+	612.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR26_Mus|LTR|ERVK	-137911.0	NR_028274	100302593.0		NR_028274	ENSMUSG00000095118	Snord14d	Gm23710	small nucleolar RNA, C/D box 14D	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-103340209-4	chr15	103340125	103340325	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013866)	promoter-TSS (NM_013866)	-139.0	NM_013866	29813.0	Mm.14099	NM_013866	ENSMUSG00000000552	Zfp385a	Hzf|Zfp385|Znf385a	zinc finger protein 385A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-123938416-2	chr9	123938316	123938516	+	700.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30276.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117281682-4	chr10	117281583	117281783	+	934.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017372, intron 1 of 3)	intron (NM_017372, intron 1 of 3)	589.0	NM_017372	17105.0	Mm.45436	NM_017372	ENSMUSG00000069516	Lyz2	AI326280|Lys|Lysm|Lyzf2|Lyzs|Lzm|Lzm-s1|Lzp	lysozyme 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-57970096-4	chr1	57970016	57970216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027630)	promoter-TSS (NR_027630)	-32.0	NM_001159865	51960.0	Mm.339711	NM_030211	ENSMUSG00000054770	Kctd18	4932411A20Rik|6530404F10Rik	potassium channel tetramerisation domain containing 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19345284-6	chr7	19345132	19345332	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127324, intron 1 of 6)	CpG	161.0	NM_007948	13870.0	Mm.280913	NM_007948	ENSMUSG00000003549	Ercc1	Ercc-1	excision repair cross-complementing rodent repair deficiency, complementation group 1	protein-coding	1.56501847845496	2.25822077040538	1.217368835803	2.43616801747299	1.38395249695977	1.96602408433434	2.62499214668902	3.0233051216367	0.982570378335228	0.332836878877641	0.833345452772687
Merged-chr4-132035922-3	chr4	132035869	132036069	+	732.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183428, intron 1 of 20)	MTB_Mm|LTR|ERVL-MaLR	13109.0	NM_001128606	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-32633168-1	chr9	32633068	32633268	+	989.0	f0_balb.idr	Intergenic	Intergenic	-62874.0	NM_011808	23871.0	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-114399724-2	chr6	114399624	114399824	+	664.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001317126, intron 1 of 1)	intron (NM_001317126, intron 1 of 1)	1638.0	NM_001317126	15465.0	Mm.333327	NM_008285	ENSMUSG00000053004	Hrh1	Bphs|H1R|HH1R|Hir	histamine receptor H1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85476182-10	chr12	85476023	85476223	+	989.366699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010234, exon 4 of 4)	exon (NM_010234, exon 4 of 4)	2233.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-6227272-4	chr4	6227162	6227362	+	985.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus4|LINE|L1	36157.0	NM_026534	68053.0	Mm.404043	NM_026534	ENSMUSG00000028243	Ubxn2b	3110003A22Rik|6430407D20Rik|AI451665|p37	UBX domain protein 2B	protein-coding	4.50559259654372	4.5134298167454	5.07500392434638	5.40315279403854	2.92541033758279	3.46526859178792	2.77279016002129	3.52731296317567	-2.30622131417206	8.02029661578606e-07	5.42636384189105e-05
Merged-chr4-120233041-2	chr4	120232941	120233141	+	797.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54220.0	NM_194060	329934.0	Mm.277090	NM_194060	ENSMUSG00000052135	Foxo6	-	forkhead box O6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-19052354-1	chr10	19052254	19052454	+	630.0	f1_balb.idr	Intergenic	Intergenic	-36944.0	NM_009397	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	0.898111580532655	1.96924615108567	0.569893304548383	0.557824036455699	1.47684737589773	0.588539310210436	1.31129208811556	0.559951910094745	-0.388632981678447	0.809859976450207	0.998431161219273
Merged-chr2-128721508-1	chr2	128721408	128721608	+	604.0	f1_c57bl6.idr	intron (NM_008587, intron 1 of 18)	ORR1D1|LTR|ERVL-MaLR	22593.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	-0.654203750232095	-0.906716396103307	-0.345559305711495	-0.917224069321165	-0.920361906015164	-0.904044330727832	-0.914362853589523	-0.916835673576791	-2.96158595613085	0.328953899946767	1
Merged-chr7-80758946-2	chr7	80758853	80759053	+	666.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_016721, intron 8 of 37)	B1_Mur2|SINE|Alu	44378.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	2.89818796991503	2.40629613560692	1.31223153205958	1.87541186649865	2.34609834038211	2.007880325791	2.22464946686736	1.8847324538857	-0.349703050597039	0.715782168314365	0.998431161219273
Merged-chr10-78305181-3	chr10	78305047	78305247	+	718.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053014, intron 2 of 9)	intron (NM_053014, intron 2 of 9)	35060.0	NR_106119	102465765.0		NR_106119	ENSMUSG00000098885	Mir7659	Gm27433|mmu-mir-7659	microRNA 7659	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-78213894-2	chr11	78213794	78213994	+	683.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009297, intron 28 of 36)	B1_Mur4|SINE|Alu	20502.0	NM_001045516	216974.0	Mm.50974	NM_001045516	ENSMUSG00000044122	Proca1	4933404M19Rik	protein interacting with cyclin A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-104940113-3	chr13	104940009	104940209	+	641.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-76216.0	NM_029984	77803.0	Mm.159995	NM_029984	ENSMUSG00000042655	Fam159b	A930021C24Rik|Shisal2b	family with sequence similarity 159, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-52625611-2	chr12	52625511	52625711	+	620.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23289.0	NR_045910	73278.0	Mm.396209	NR_045910	ENSMUSG00000100315	1700031P21Rik	-	RIKEN cDNA 1700031P21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-74880205-4	chr18	74880080	74880280	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB3|LINE|L1	81083.0	NM_010720	16891.0	Mm.299647	NM_010720	ENSMUSG00000053846	Lipg	3110013K01Rik|EL|lipase|mEDL	lipase, endothelial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-172400114-4	chr2	172400006	172400206	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080820, intron 1 of 6)	L2c|LINE|L2	6312.0	NM_001276423	320664.0	Mm.210195	NM_001033538	ENSMUSG00000074570	Cass4	F730031O20Rik	Cas scaffolding protein family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-53898403-4	chr11	53898316	53898516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA6|LINE|L1	-6713.0	NM_011396	20520.0	Mm.42253	NM_011396	ENSMUSG00000018900	Slc22a5	Lstpl|Octn2|jvs	solute carrier family 22 (organic cation transporter), member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-83145723-4	chr15	83145615	83145815	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347082, intron 1 of 7)	intron (NM_001347082, intron 1 of 7)	3663.0	NM_178627	73826.0	Mm.23758	NM_178627	ENSMUSG00000041815	Poldip3	1110008P04Rik|AA408269|AL022852|C77954|PDIP46|SKAR|mKIAA1649	polymerase (DNA-directed), delta interacting protein 3	protein-coding	3.47505905721202	3.03575113577322	4.00976446475063	2.17463311953142	2.81875351904274	4.32760479833603	3.56970166885022	4.07733693764515	0.698684426413101	0.268629314037046	0.771990954092706
Merged-chr11-115408971-1	chr11	115408871	115409071	+	550.0	f1_balb.idr	intron (NM_001361462, intron 2 of 4)	intron (NM_001361462, intron 2 of 4)	5219.0	NR_154991	68572.0	Mm.271062	NM_026729	ENSMUSG00000018858	Mrpl58	1110001A02Rik|1110002E03Rik|Ict1|MRP-L58	mitochondrial ribosomal protein L58	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-24453636-2	chr5	24453536	24453736	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359881, intron 1 of 15)	intron (NM_001359881, intron 1 of 15)	1459.0	NM_139153	213990.0	Mm.250703	NM_139153	ENSMUSG00000023353	Agap3	AGAP-3|AV028425|Centg3|Crag|Crag.|MRIP-1|cnt-g3	ArfGAP with GTPase domain, ankyrin repeat and PH domain 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70159521-4	chr14	70159408	70159608	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001004155)	promoter-TSS (NM_001004155)	-6.0	NM_001004155	268759.0	Mm.12148	NM_001004155	ENSMUSG00000044551	9930012K11Rik	-	RIKEN cDNA 9930012K11 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-136138245-2	chr5	136138145	136138345	+	727.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028070)	promoter-TSS (NM_028070)	-536.0	NM_028070	72041.0	Mm.294725	NM_028070	ENSMUSG00000039754	Alkbh4	2010004B12Rik|Abj4	alkB homolog 4, lysine demethylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-79248267-1	chr3	79248167	79248367	+	827.0	f0_balb.idr	non-coding (NR_045502, exon 2 of 3)	non-coding (NR_045502, exon 2 of 3)	35348.0	NR_045502	70924.0	Mm.444622	NR_045502	ENSMUSG00000104585	4921511C10Rik	-	RIKEN cDNA 4921511C10 gene	ncRNA	1.80612126938184	2.19928797511838	1.56305355375726	2.8458401874253	2.64986791970438	3.0556499370169	1.30542797519335	2.20569233683659	0.534259374933317	0.579888110363625	0.966140189058893
Merged-chr18-80935495-2	chr18	80935395	80935595	+	771.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1437.0	NM_015805	50771.0	Mm.247138	NM_015805	ENSMUSG00000024566	Atp9b	AA934181|Atpc2b|IIb|MMR	ATPase, class II, type 9B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-31091335-3	chr3	31091235	31091435	+	859.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3723.0	NM_001039090	20482.0	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-47000596-4	chr14	47000507	47000707	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163433)	promoter-TSS (NM_001163433)	-733.0	NM_001163433	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-93962533-3	chr6	93962413	93962613	+	835.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029850, intron 1 of 23)	intron (NM_001029850, intron 1 of 23)	-48823.0	NM_001083320	14924.0	Mm.217216	NM_010367	ENSMUSG00000045095	Magi1	AIP3|BAP1|Baiap1|Gukmi1|MAGI1c|Magi-1|TNRC19|WWP3|mKIAA4129	membrane associated guanylate kinase, WW and PDZ domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-136940176-4	chr6	136940059	136940259	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001301303)	promoter-TSS (NM_001301303)	-632.0	NM_001301303	11857.0	Mm.2241	NM_007486	ENSMUSG00000030220	Arhgdib	D4|Gdid4|Ly-GDI	Rho, GDP dissociation inhibitor (GDI) beta	protein-coding	3.58652324254205	3.61323145144831	3.63330654980936	2.74939224864776	3.32395085206578	2.04239693078318	2.72131125198166	3.4173710449825	-0.729284970444028	0.263577826001109	0.76534529437592
Merged-chr11-26165612-2	chr11	26165512	26165712	+	741.416626	f1_balb.idr|f1_c57bl6.idr	intron (NR_027973, intron 1 of 5)	L1_Mus3|LINE|L1	-36628.0	NR_105791	102466154.0		NR_105791	ENSMUSG00000099015	Mir6372	Gm27358|mmu-mir-6372	microRNA 6372	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65534740-3	chr9	65534646	65534846	+	926.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45341.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-41599806-3	chr7	41599714	41599914	+	666.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33717.0	NM_001360675	67607.0	Mm.384626	NM_023363	ENSMUSG00000074165	Zfp788	2810426N06Rik|AI256342|AI605193	zinc finger protein 788	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-47151603-2	chr7	47151503	47151703	+	550.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17919.0	NM_013643	19259.0	Mm.4654	NM_013643	ENSMUSG00000030854	Ptpn5	Step	protein tyrosine phosphatase, non-receptor type 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-11912304-4	chr19	11912203	11912403	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172635)	promoter-TSS (NM_172635)	-96.0	NM_172635	225929.0	Mm.42711	NM_172635	ENSMUSG00000046139	Patl1	AV312086|Pat1b	protein associated with topoisomerase II homolog 1 (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-8986561-2	chr13	8986461	8986661	+	595.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027000, intron 8 of 16)	intron (NM_027000, intron 8 of 16)	9451.0	NM_027000	69237.0	Mm.41800	NM_027000	ENSMUSG00000021149	Gtpbp4	2610028C09Rik|Crfg|Gtpbp3|NGB|Nog1	GTP binding protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34661164-2	chr17	34661110	34661310	+	560.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9325.0	NM_031176	81877.0	Mm.290527	NM_031176	ENSMUSG00000033327	Tnxb	Tn-mhc|Tnx	tenascin XB	protein-coding	1.55069644823001	1.49801737791454	2.15967356806095	1.52968513762159	0.830953109437053	0.888094535001822	1.71735948272871	0.854254537253139	-2.04547870640439	0.128650339541605	0.561153698674326
Merged-chr19-17276209-3	chr19	17276081	17276281	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	63324.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	7.11280041425579	6.80843345543031	7.15789552843664	6.7261754394479	2.48883268667454	2.00602427813221	3.26880622829934	2.68306946424608	-5.29833181945019	1.01986321201319e-34	1.83544782266013e-30
Merged-chr19-37702549-3	chr19	37702448	37702648	+	794.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4740.0	NM_007811	13082.0	Mm.42230	NM_007811	ENSMUSG00000024987	Cyp26a1	Cyp26|P450RA|P450RAI|RAH	cytochrome P450, family 26, subfamily a, polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-124879932-2	chr2	124879832	124880032	+	601.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-188195.0	NM_175034	317750.0	Mm.330538	NM_175034	ENSMUSG00000035183	Slc24a5	F630045L20Rik|JSX|NCKX5|NCX5|Oca6	solute carrier family 24, member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-47885655-3	chr3	47885555	47885755	+	981.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	141104.0	NR_040408	666202.0	Mm.465057	NR_040408	ENSMUSG00000103257	Gm7977	EG666202	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide pseudogene	pseudo	3.70357679398972	5.50185002385356	2.56542586975923	4.04251835236759	4.40731484568215	5.56001650988751	3.22375762538152	3.70965837059259	0.20332111673737	0.832698797343412	0.998431161219273
Merged-chr13-55465976-4	chr13	55465827	55466027	+	811.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001030296, intron 1 of 2)	intron (NM_001030296, intron 1 of 2)	1660.0	NM_001030296	432763.0	Mm.315457	NM_001030296	ENSMUSG00000034686	Prr7	XM_484263	proline rich 7 (synaptic)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-22412137-2	chr16	22412037	22412237	+	828.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358428, intron 6 of 12)	intron (NM_001358428, intron 6 of 12)	26231.0	NM_001358428	104156.0	Mm.155708	NM_023794	ENSMUSG00000013089	Etv5	1110005E01Rik|8430401F14Rik|ERM	ets variant 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64233405-5	chr5	64233304	64233504	+	848.2666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 1 of 18)	intron (NM_001289514, intron 1 of 18)	3047.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-25461259-8	chr14	25461050	25461250	+	960.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	1965.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-130709716-4	chr3	130709605	130709805	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025509)	promoter-TSS (NM_025509)	-261.0	NM_025509	66357.0	Mm.300697	NM_025509	ENSMUSG00000041084	Ostc	2310008M10Rik|5730557H03Rik	oligosaccharyltransferase complex subunit (non-catalytic)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-102247730-4	chr15	102247659	102247859	+	997.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011244, intron 3 of 9)	CpG	-1259.0	NM_001042727	19411.0	Mm.1273	NM_011244	ENSMUSG00000001288	Rarg	Nr1b3|RAR-gamma|RARD|RARgamma2	retinoic acid receptor, gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-61400760-2	chr3	61400660	61400860	+	585.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36253.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-84268464-2	chr17	84268364	84268564	+	829.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183021, intron 30 of 37)	intron (NM_183021, intron 30 of 37)	-80517.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-116459405-3	chr6	116459323	116459523	+	757.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009662, intron 1 of 13)	intron (NM_009662, intron 1 of 13)	1755.0	NM_009662	11689.0	Mm.41072	NM_009662	ENSMUSG00000025701	Alox5	5-LO|5-LOX|5LO|5LX|AI850497|F730011J02	arachidonate 5-lipoxygenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-94588282-2	chr15	94588182	94588382	+	803.799988	f1_balb.idr|f1_c57bl6.idr	exon (NM_008971, exon 2 of 9)	exon (NM_008971, exon 2 of 9)	1542.0	NM_008971	19230.0	Mm.490250	NM_008971	ENSMUSG00000022451	Twf1	A6|Ptk9|twinfilin	twinfilin actin binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-127371989-1	chr1	127371889	127372089	+	829.0	f1_balb.idr	intron (NM_145128, intron 6 of 17)	intron (NM_145128, intron 6 of 17)	167003.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-4258406-4	chr8	4258311	4258511	+	955.883301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_183315, exon 2 of 2)	exon (NM_183315, exon 2 of 2)	863.0	NM_183315	330695.0	Mm.34210	NM_183315	ENSMUSG00000048644	Ctxn1	BC028881|Ctxn	cortexin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88137670-3	chr3	88137497	88137697	+	825.583313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4775.0	NM_001310593	17261.0	Mm.28184	NM_133665	ENSMUSG00000001419	Mef2d	C80750	myocyte enhancer factor 2D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122474023-4	chr8	122473918	122474118	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033142, intron 1 of 5)	intron (NM_001033142, intron 1 of 5)	2046.0	NM_001033142	68718.0	Mm.34356	NM_001033142	ENSMUSG00000014470	Rnf166	1110031E24Rik|AW555115|Zfp313l	ring finger protein 166	protein-coding	4.83731474579965	4.07451186884454	3.60226450351164	4.20669031471396	4.59135052570335	4.31283736636142	3.9693767431271	4.72191869587225	0.215347624007403	0.621972968081078	0.979537295922371
Merged-chr8-66457366-2	chr8	66457266	66457466	+	631.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175188, intron 7 of 7)	intron (NM_175188, intron 7 of 7)	29164.0	NM_025465	66282.0	Mm.294985	NM_025465	ENSMUSG00000025591	Tma16	1810029B16Rik	translation machinery associated 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-100750789-4	chr5	100750689	100750889	+	907.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31073.0	NM_152803	15442.0	Mm.265786	NM_152803	ENSMUSG00000035273	Hpse	HSE1|Hpa|Hpr1	heparanase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85343747-2	chr12	85343647	85343847	+	961.900024	f1_balb.idr|f1_c57bl6.idr	intron (NM_026775, intron 4 of 4)	PB1D10|SINE|Alu	-4385.0	NM_145138	217718.0	Mm.29071	NM_145138	ENSMUSG00000034290	Nek9	C130021H08Rik	NIMA (never in mitosis gene a)-related expressed kinase 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-105138336-4	chr5	105138245	105138445	+	937.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008620, intron 1 of 10)	intron (NM_008620, intron 1 of 10)	1241.0	NM_001256005	17472.0	Mm.440525	NM_008620	ENSMUSG00000079363	Gbp4	AW228052|Mag-2|Mpa-2|Mpa2	guanylate binding protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-92884571-4	chr7	92884465	92884665	+	834.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028243, intron 1 of 8)	intron (NM_028243, intron 1 of 8)	9312.0	NM_028243	72461.0	Mm.389969	NM_028243	ENSMUSG00000061119	Prcp	2510048K03Rik|2610104A14Rik|AI451719|HUMPCP|PCP	prolylcarboxypeptidase (angiotensinase C)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-78215292-2	chr16	78215192	78215392	+	563.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40162.0	NR_045698	100503619.0	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-105408233-3	chr9	105408148	105408348	+	905.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	7460.0	NM_001164828	66595.0	Mm.84941	NM_025651	ENSMUSG00000032567	Aste1	1100001A21Rik|AV006403	asteroid homolog 1	protein-coding	-1.50874880059862	-1.47511716453926	-1.4852876488768	-1.49364198752927	-1.50638792193216	-0.992828729615453	-1.48298527415345	-1.4921465649048	2.3185461113984	0.50391666537493	1
Merged-chr5-115155534-1	chr5	115155434	115155634	+	595.0	f1_c57bl6.idr	intron (NM_175403, intron 1 of 4)	intron (NM_175403, intron 1 of 4)	2642.0	NM_175403	109154.0	Mm.153963	NM_175403	ENSMUSG00000048578	Mlec	2410014A08Rik|AI850530|ESTM19|X83352|mKIAA0152	malectin	protein-coding	1.36844745493715	1.31892283197307	1.50463881774357	1.34874184927113	0.736287635137611	0.774794136609334	0.762449999395145	1.46352175519127	-1.75392973643801	0.230047776988578	0.723932478136638
Merged-chr6-40576007-4	chr6	40575919	40576119	+	962.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_021364, exon 6 of 6)	3' UTR (NM_021364, exon 6 of 6)	4631.0	NM_146383	258381.0	Mm.377469	NM_146383	ENSMUSG00000045514	Olfr460	MOR120-2	olfactory receptor 460	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101300577-3	chr7	101300464	101300664	+	939.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152152, intron 1 of 16)	intron (NR_152152, intron 1 of 16)	1524.0	NM_001111111	73683.0	Mm.275744	NM_001111111	ENSMUSG00000047767	Atg16l2	2410118P20Rik	autophagy related 16-like 2 (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-127322745-4	chr2	127322658	127322858	+	894.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13401.0	NM_010090	13537.0	Mm.4729	NM_010090	ENSMUSG00000027368	Dusp2	PAC1	dual specificity phosphatase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-94995025-4	chr3	94994907	94995107	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293715, intron 5 of 11)	L2c|LINE|L2	-9161.0	NR_105980	102465613.0		NR_105980	ENSMUSG00000099033	Mir7013	Gm27488|mmu-mir-7013	microRNA 7013	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-84554645-4	chr10	84554557	84554757	+	896.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1319.0	NR_040658	442847.0	Mm.128292	NR_040658	ENSMUSG00000097076	Platr7	C330046G13Rik	pluripotency associated transcript 7	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-135065508-4	chr6	135065392	135065592	+	977.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181444)	promoter-TSS (NM_181444)	-170.0	NM_181444	232431.0	Mm.23575	NM_181444	ENSMUSG00000046733	Gprc5a	Rai3|Raig1	G protein-coupled receptor, family C, group 5, member A	protein-coding	2.5338628854861	1.4170700311621	1.64007993414724	2.37792772962368	2.37540962601602	3.03779067905347	2.34472792017365	2.84695751521425	1.28298265068872	0.145459456090412	0.595944839973915
Merged-chr19-45785107-2	chr19	45785007	45785207	+	648.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus1|LINE|L1	-1554.0	NM_023799	76055.0	Mm.122725	NM_023799	ENSMUSG00000025220	Mgea5	Hy5|Ncoat|OGA	meningioma expressed antigen 5 (hyaluronidase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-34194700-4	chr10	34194616	34194816	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172508, intron 1 of 5)	intron (NM_172508, intron 1 of 5)	12835.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-65691602-4	chr18	65691500	65691700	+	963.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6668.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	2.71405133589995	1.76524254403878	1.39789397681612	2.07811443610746	4.00220474959239	3.83722212556438	2.77024095725768	2.67672616606482	2.45627144272375	0.00222928375060743	0.036209765035814
Merged-chr4-103039961-3	chr4	103039866	103040066	+	795.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146254, intron 16 of 16)	intron (NM_146254, intron 16 of 16)	-13124.0	NM_001290648	23919.0	Mm.100163	NM_011831	ENSMUSG00000066090	Insl5	RIF2	insulin-like 5	protein-coding	-1.56355737717652	-1.81244775989375	-1.82128546162293	-1.82854501295842	-1.83962066705452	-1.81053259306168	-1.81928479966835	-1.82724555674025	-1.28500227969968	0.715751224811686	1
Merged-chr17-88256589-4	chr17	88256465	88256665	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	131053.0	NM_001190356	225058.0	Mm.312053	NM_001190356		Gm4832	EG225058	predicted gene 4832	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-110639711-3	chr5	110639608	110639808	+	657.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13674.0	NM_153570	100608.0	Mm.29960	NM_153570	ENSMUSG00000033294	Noc4l	AI326906	NOC4 like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-79911019-2	chr12	79910919	79911119	+	889.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13714.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-52047781-1	chr3	52047681	52047881	+	662.0	f0_balb.idr	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	57225.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-41298548-4	chr8	41298446	41298646	+	950.775024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023662, intron 22 of 37)	L1MA5A|LINE|L1	58787.0	NM_023662	18536.0	Mm.117896	NM_023662	ENSMUSG00000031592	Pcm1	2600002H09Rik|9430077F19Rik|C030044G17Rik	pericentriolar material 1	protein-coding	0.0330108811688406	0.237000412303571	0.0724018842504664	-0.0880923285608441	0.149077838516021	0.243838160133792	0.0766244527890763	-0.0875623611820249	0.305318013589426	0.877081726877743	1
Merged-chr19-4295572-4	chr19	4295449	4295649	+	965.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290818, intron 1 of 20)	intron (NM_001290818, intron 1 of 20)	10673.0	NM_130863	110355.0	Mm.254144	NM_130863	ENSMUSG00000024858	Grk2	Adrbk-1|Adrbk1|Bark-1|beta ARK|betaARK1	G protein-coupled receptor kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-20311792-4	chr13	20311689	20311889	+	897.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 13 of 21)	intron (NM_080288, intron 13 of 21)	-161201.0	NM_198093	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-26612323-3	chr8	26612234	26612434	+	728.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	212089.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-34536060-4	chr5	34535959	34536159	+	987.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011893, intron 1 of 12)	intron (NM_011893, intron 1 of 12)	-7306.0	NM_001145858	24055.0	Mm.5012	NM_011893	ENSMUSG00000054520	Sh3bp2	3BP2	SH3-domain binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32846243-5	chr2	32846158	32846358	+	888.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113569, intron 1 of 19)	CpG	974.0	NM_009295	20910.0	Mm.278865	NM_009295	ENSMUSG00000026797	Stxbp1	AI317162|AI326233|MMS10-G|Ms10g|Munc-18a|Munc18-1|N-sec1|Rb-sec1|Sxtbp1|Unc18-1|Unc18h|nsec1	syntaxin binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-54969246-4	chr12	54969135	54969335	+	884.68335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013815, intron 3 of 26)	intron (NM_013815, intron 3 of 26)	17101.0	NM_013815	217578.0	Mm.479583	NM_013815	ENSMUSG00000035021	Baz1a	Acf1|B930060C03|BC065123|Gtl5|Wcrf180|cbp146	bromodomain adjacent to zinc finger domain 1A	protein-coding	1.92560491676367	0.944169034686452	1.61814937055669	1.87857380685953	1.6031156196573	1.6938493343356	0.930688133169429	0.915558134409802	-1.02161303670575	0.442139495581978	0.911405219295188
Merged-chr18-62478273-3	chr18	62478205	62478405	+	799.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	65547.0	NM_001361091	107035.0	Mm.21295	NM_134136	ENSMUSG00000042211	Fbxo38	6030410I24Rik|AU044865|AW214031|Moka|SP329	F-box protein 38	protein-coding	2.71336911716911	4.60000971541551	3.8552999854626	3.45751327952516	1.15897968648824	2.21917757054138	1.30945675173932	1.82330900536258	-4.06083852107269	4.87826831445717e-06	0.000249415326293425
Merged-chr4-45097689-4	chr4	45097574	45097774	+	681.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10439.0	NM_001134646	68512.0	Mm.282081	NM_001099675	ENSMUSG00000078713	Tomm5	1110019J04Rik|Tom5	translocase of outer mitochondrial membrane 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-114909012-4	chr4	114908910	114909110	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008593)	promoter-TSS (NM_008593)	-112.0	NM_008593	17301.0	Mm.7997	NM_008593	ENSMUSG00000055210	Foxd2	AI426778|Mf2	forkhead box D2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167588910-4	chr2	167588808	167589008	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43097.0	NM_001311146	66589.0	Mm.278783	NM_023230	ENSMUSG00000078923	Ube2v1	0610011J09Rik|AI256840|CROC-1|CROC1|D7Bwg1382e|UEV-1	ubiquitin-conjugating enzyme E2 variant 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119054739-2	chr11	119054639	119054839	+	886.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13826.0	NM_013926	30951.0	Mm.99953	NM_013926	ENSMUSG00000025578	Cbx8	Pc3	chromobox 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-11267131-2	chr12	11267031	11267231	+	821.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361252, intron 1 of 9)	intron (NM_001361252, intron 1 of 9)	1245.0	NM_025695	67241.0	Mm.173953	NM_025695	ENSMUSG00000020608	Smc6	2810489L22Rik|3830418C19Rik|AA990493|AU018782|AW742439|SMC-6|Smc6l1|mKIAA4103	structural maintenance of chromosomes 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129496799-4	chr4	129496717	129496917	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5627.0	NM_001085491	68233.0	Mm.424983	NM_001085491	ENSMUSG00000078554	Fam229a	1700125D06Rik	family with sequence similarity 229, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-75773692-4	chr2	75773589	75773789	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58488.0	NM_172666	228061.0	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-137831965-2	chr6	137831865	137832065	+	625.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172733, intron 7 of 8)	intron (NM_172733, intron 7 of 8)	77388.0	NM_172733	232449.0	Mm.29181	NM_172733	ENSMUSG00000030225	Dera	2010002D22Rik|2500002K03Rik|DEOC	deoxyribose-phosphate aldolase (putative)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-137945673-4	chr3	137945594	137945794	+	870.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011932, intron 4 of 8)	intron (NM_011932, intron 4 of 8)	27139.0	NM_019920	56692.0	Mm.331392	NM_019920	ENSMUSG00000091512	Lamtor3	AW556229|Map2k1ip1|Mapbp|Mapksp1|Mp1	late endosomal/lysosomal adaptor, MAPK and MTOR activator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-43711762-4	chr19	43711676	43711876	+	950.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_053103, exon 6 of 13)	exon (NM_053103, exon 6 of 13)	22087.0	NM_053103	93685.0	Mm.248237	NM_053103	ENSMUSG00000025192	Entpd7	1810012B13Rik|1810020C02Rik|2810003F23Rik|LALP1|Lysal2	ectonucleoside triphosphate diphosphohydrolase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16910142-4	chr7	16910042	16910242	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008967, exon 2 of 2)	3' UTR (NM_008967, exon 2 of 2)	3652.0	NM_008967	19222.0	Mm.287572	NM_008967	ENSMUSG00000043017	Ptgir	IP|PGI2	prostaglandin I receptor (IP)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-86598939-2	chr6	86598839	86599039	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-29235.0	NM_026414	67855.0	Mm.183043	NM_026414	ENSMUSG00000033508	Asprv1	2300003P22Rik|AA986851|SASP|SASPase|Taps	aspartic peptidase, retroviral-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-51518870-3	chr1	51518784	51518984	+	601.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151621, intron 3 of 3)	intron (NR_151621, intron 3 of 3)	-40485.0	NM_001310549	109019.0	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-110460219-2	chr12	110460119	110460319	+	676.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001135001, intron 2 of 13)	intron (NM_001135001, intron 2 of 13)	13040.0	NM_001135001	26931.0	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128461317-2	chr10	128461217	128461417	+	684.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114097, intron 1 of 27)	intron (NM_001114097, intron 1 of 27)	2081.0	NM_001114097	68094.0	Mm.417338	NM_198160	ENSMUSG00000025369	Smarcc2	5930405J04Rik	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-94536842-2	chr9	94536742	94536942	+	992.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033145, intron 1 of 2)	intron (NM_001033145, intron 1 of 2)	1239.0	NM_001033145	68861.0	Mm.258746	NM_001033145	ENSMUSG00000045414	1190002N15Rik	GoPro49|HASF	RIKEN cDNA 1190002N15 gene	protein-coding	1.8484808989681	1.4763161958171	1.10269786749188	1.50581945197666	1.32197108191383	0.912669625995012	0.897891726790478	1.81393587483677	-0.734653173350145	0.573341441925969	0.964496317550327
Merged-chr17-65836424-1	chr17	65836324	65836524	+	1000.0	f1_c57bl6.idr	intron (NR_152099, intron 17 of 20)	intron (NR_152099, intron 17 of 20)	48499.0	NM_001198949	19765.0	Mm.17009	NM_009067	ENSMUSG00000024096	Ralbp1	RLIP76|Rip1	ralA binding protein 1	protein-coding	0.324682103898982	1.2092217345414	0.530640748432994	0.335100851352856	0.736140035647922	0.351154475402129	0.536067927486209	0.908817496226108	-0.0903679424288037	0.959110070419989	1
Merged-chr13-89779440-4	chr13	89779288	89779488	+	897.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36876.0	NM_001134475	13003.0	Mm.158700	NM_019389	ENSMUSG00000021614	Vcan	5430420N07Rik|9430051N09|Cspg2|DPEAAE|NG2|PG-M|PG-M(V0)|PG-M(V1)|hdf	versican	protein-coding	0.422794536831167	1.05506950100855	0.12808544674548	0.121637434359636	0.112414864775541	0.138201075727144	1.00336265774725	0.122768454203974	-0.420563616973504	0.839143934817961	1
Merged-chr6-101532710-2	chr6	101532610	101532810	+	833.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-154813.0	NM_018884	55983.0	Mm.321654	NM_018884	ENSMUSG00000035357	Pdzrn3	1110020C07Rik|AI429718|AL023082|LNX3|SEMACAP3|Semcap3	PDZ domain containing RING finger 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118443350-4	chr11	118443209	118443409	+	762.549988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001204130)	promoter-TSS (NM_001204130)	-225.0	NM_001204130	56745.0	Mm.23845	NM_019959	ENSMUSG00000017446	C1qtnf1	1600017K21Rik|CTRP1|Zsig37	C1q and tumor necrosis factor related protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-80452274-4	chr1	80452113	80452313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040460, intron 2 of 2)	L2|LINE|L2	6281.0	NR_040460	72208.0	Mm.396181	NR_040460	ENSMUSG00000101483	1700016L21Rik	CD11c-DTR|DCKO|DTR-GFP|DTR-GRP|Jr3|Tg(Itgax-DTR/EGFP)57Lan	RIKEN cDNA 1700016L21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-4314759-4	chr18	4314650	4314850	+	676.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38203.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-107595070-4	chr7	107594969	107595169	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008905)	promoter-TSS (NM_008905)	18.0	NM_008905	19024.0	Mm.2817	NM_008905	ENSMUSG00000036528	Ppfibp2	Cclp1	PTPRF interacting protein, binding protein 2 (liprin beta 2)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-100795904-2	chr12	100795804	100796004	+	585.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361017, intron 3 of 14)	MIR|SINE|MIR	16847.0	NM_145448	217830.0	Mm.218590	NM_145448	ENSMUSG00000021185	Dglucy	9030617O03Rik	D-glutamate cyclase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-81320223-2	chr7	81320123	81320323	+	799.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_008803, intron 16 of 21)	intron (NM_008803, intron 16 of 21)	25011.0	NM_009092	20068.0	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-82867081-4	chr10	82866982	82867182	+	987.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_025499, exon 1 of 1)	exon (NM_025499, exon 1 of 1)	456.0	NM_025499	66341.0	Mm.443284	NM_025499	ENSMUSG00000109864	Eid3	1700027M21Rik|NS4EB	EP300 interacting inhibitor of differentiation 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89964518-4	chr3	89964420	89964620	+	914.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1188.0	NM_001081182	54667.0	Mm.30455	NM_001081182	ENSMUSG00000060671	Atp8b2	Id	ATPase, class I, type 8B, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-78910526-2	chr1	78910421	78910621	+	791.5	f0_balb.idr|f1_c57bl6.idr	intron (NR_151519, intron 3 of 3)	Lx8|LINE|L1	93610.0	NM_021342	57814.0	Mm.24386	NM_021342	ENSMUSG00000047330	Kcne4	AW487937|MiRP3	potassium voltage-gated channel, Isk-related subfamily, gene 4	protein-coding	1.802062320179	2.77901785409199	1.55946645859922	3.19530564474999	2.08882799581354	1.62181016576396	1.9747024645471	2.52736018258121	-0.916114472380049	0.325300832025047	0.827782420413875
Merged-chr5-147418111-1	chr5	147418011	147418211	+	726.0	f1_balb.idr	promoter-TSS (NR_033625)	promoter-TSS (NR_033625)	-509.0	NR_033625	100039805.0	Mm.394705	NR_033625	ENSMUSG00000106820	D5Ertd605e	Gm2433	DNA segment, Chr 5, ERATO Doi 605, expressed	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-95319092-4	chr1	95318998	95319198	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026321, intron 1 of 2)	intron (NM_026321, intron 1 of 2)	5470.0	NM_026321	67698.0	Mm.272705	NM_026321	ENSMUSG00000051185	Fam174a	2310044D20Rik|Fam174|Naa6|Tmem157	family with sequence similarity 174, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80855955-2	chr10	80855855	80856055	+	613.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025349)	promoter-TSS (NM_025349)	680.0	NM_175195	73218.0	Mm.3285	NM_175195	ENSMUSG00000035206	Sppl2b	3110056O03Rik|AW550292|PSL1	signal peptide peptidase like 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-50198923-2	chr11	50198823	50199023	+	552.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026543, intron 6 of 6)	intron (NM_026543, intron 6 of 6)	11897.0	NM_001290769	18412.0	Mm.40828	NM_011018	ENSMUSG00000015837	Sqstm1	A170|OSF-6|Osi|STAP|STONE14|p62	sequestosome 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-42072359-3	chr19	42072257	42072457	+	975.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	14013.0	NM_198108	226123.0	Mm.259441	NM_198108	ENSMUSG00000049670	Morn4	-	MORN repeat containing 4	protein-coding	3.1632069045521	2.60152648303609	3.65504971905013	1.65624419080109	5.21814500950892	5.05547005290157	4.97557387628089	4.28065509740426	2.67029219731897	5.66037985821955e-07	4.05856001228595e-05
Merged-chr6-5594669-2	chr6	5594569	5594769	+	740.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-98391.0	NM_013743	27273.0	Mm.235547	NM_013743	ENSMUSG00000019577	Pdk4	AV005916	pyruvate dehydrogenase kinase, isoenzyme 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-128760883-4	chr6	128760781	128760981	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27760.0	NM_001159904	17059.0	Mm.480764	NM_008527	ENSMUSG00000030325	Klrb1c	AI462337|CD161|Klrb1b|Ly-59|Ly55c|Ly59|NK-RP1|NK1.1|NKR-P1.9|NKRP1|NKRP140|Nk-1|Nk-1.2|Nk1|Nk1.2|Nkrp1b|Nkrp1c|ly-55c	killer cell lectin-like receptor subfamily B member 1C	protein-coding	5.532210861568	5.23002431325213	5.65616278242549	5.39300631022745	5.8646215522139	4.86256199114887	5.35328864082886	5.83773400555934	0.0967340914115294	0.745169809983182	0.998431161219273
Merged-chr10-81178925-3	chr10	81178730	81178930	+	789.232117	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028549)	promoter-TSS (NR_028549)	-131.0	NR_028549	100217454.0		NR_028549	ENSMUSG00000064441	Snord37	MBII-376	small nucleolar RNA, C/D box 37	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-58072142-4	chr14	58071981	58072181	+	990.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013518)	promoter-TSS (NM_013518)	-605.0	NM_013518	14180.0	Mm.8846	NM_013518	ENSMUSG00000021974	Fgf9	Eks	fibroblast growth factor 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-100535346-2	chr3	100535246	100535446	+	773.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46154.0	NM_001142952	74645.0	Mm.226900	NM_001142952	ENSMUSG00000044468	Fam46c	4930431B09Rik|AI449797	family with sequence similarity 46, member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-54137875-2	chr8	54137775	54137975	+	648.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009506, intron 1 of 6)	intron (NM_009506, intron 1 of 6)	60343.0	NM_009506	22341.0	Mm.1402	NM_009506	ENSMUSG00000031520	Vegfc	AW228853|VEGF-C	vascular endothelial growth factor C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-94551832-4	chr8	94551739	94551939	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153507, intron 4 of 15)	intron (NM_153507, intron 4 of 15)	18811.0	NM_153507	234577.0	Mm.291815	NM_153507	ENSMUSG00000034361	Cpne2	3322401K10Rik	copine II	protein-coding	3.93427189476331	4.8812165522104	4.00896491172722	3.96271698318442	3.73264463379422	3.48200263871975	3.5657855944717	4.48723594798622	-0.496861344632911	0.305476569326152	0.806818582060869
Merged-chr3-58672183-4	chr3	58672067	58672267	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20125.0	NR_004433	666680.0	Mm.422212	NR_004433		Gm8234	AU022133	spermine synthase pseudogene	pseudo	2.88290600761851	3.00909747967616	3.7840744250346	3.04585159797536	3.93625816412911	3.86969633689958	2.46441054434372	3.70080405197101	0.591948814814129	0.3323162573188	0.833345452772687
Merged-chr17-27851331-4	chr17	27851217	27851417	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011432, intron 5 of 5)	intron (NM_011432, intron 5 of 5)	-5190.0	NM_001080769	224648.0	Mm.291291	NM_001080769	ENSMUSG00000039512	Uhrf1bp1	1110020K19Rik|AA408674|F830021D11Rik|mKIAA4127	UHRF1 (ICBP90) binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-76782038-2	chr11	76781938	76782138	+	870.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007754, exon 21 of 21)	3' UTR (NM_007754, exon 21 of 21)	-18460.0	NM_001356321	53334.0	Mm.20931	NM_016810	ENSMUSG00000010392	Gosr1	AI414660|AI426320|BB145494|GOS-28|GOSRI|GS28	golgi SNAP receptor complex member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-79978287-2	chr18	79978153	79978353	+	946.583374	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-68642.0	NM_053117	93737.0	Mm.24678	NM_053117	ENSMUSG00000056214	Pard6g	2410049N21Rik|Par6a	par-6 family cell polarity regulator gamma	protein-coding	3.18028801399102	2.81442720381913	1.75129562534933	3.47561389254754	5.59451638408279	4.90241167952159	4.67248340962474	5.02852565809489	2.86327174973914	1.19995799767843e-08	1.39326736027218e-06
Merged-chr14-63508589-2	chr14	63508489	63508689	+	772.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021480, intron 1 of 8)	CpG	503.0	NM_021480	58865.0	Mm.354229	NM_021480	ENSMUSG00000021953	Tdh	-	L-threonine dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-79932746-4	chr15	79932662	79932862	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144811)	promoter-TSS (NM_144811)	-116.0	NM_144811	52609.0	Mm.323442	NM_144811	ENSMUSG00000053411	Cbx7	1600014J01Rik|AI851678|D15Ertd417e	chromobox 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-14633326-4	chr14	14633236	14633436	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69689.0	NM_001360505	218756.0	Mm.258893	NM_001033270	ENSMUSG00000021733	Slc4a7	E430014N10Rik|NBC3|NBCn1|NBCn1-G|Tg(Thy1-SNCA)12Mjff	solute carrier family 4, sodium bicarbonate cotransporter, member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-77449748-2	chr8	77449648	77449848	+	624.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030113, intron 3 of 22)	intron (NM_030113, intron 3 of 22)	-67308.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-116549530-2	chr2	116549430	116549630	+	560.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-329161.0	NM_001355572	67356.0	Mm.131623	NM_026104	ENSMUSG00000027355	Tmco5	1700095F04Rik|Tmco5a	transmembrane and coiled-coil domains 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5574855-4	chr17	5574737	5574937	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	MLT1H1|LTR|ERVL-MaLR	82237.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-156228017-4	chr4	156227911	156228111	+	973.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001008233, intron 2 of 15)	intron (NM_001008233, intron 2 of 15)	531.0	NM_001008233	231002.0	Mm.423124	NM_001008233	ENSMUSG00000078485	Plekhn1	BC025458	pleckstrin homology domain containing, family N member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125574008-2	chr6	125573908	125574108	+	609.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011708, intron 6 of 51)	intron (NM_011708, intron 6 of 51)	21060.0	NM_011708	22371.0	Mm.22339	NM_011708	ENSMUSG00000001930	Vwf	6820430P06Rik|AI551257|B130011O06Rik|C630030D09|F8VWF|VWD	Von Willebrand factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-53841442-2	chr1	53841343	53841543	+	821.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001883, intron 21 of 28)	intron (NM_001001883, intron 21 of 28)	-7981.0	NR_106149	102465783.0		NR_106149	ENSMUSG00000098443	Mir7681	Gm27806|mmu-mir-7681	microRNA 7681	ncRNA	0.129325568017482	0.142508909616143	0.138141965183358	0.687298768583545	0.256107877517288	0.46399454121692	0.649891879258853	0.135385572838968	0.652772189182047	0.751600846279865	1
Merged-chr19-4292670-2	chr19	4292570	4292770	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290818, intron 3 of 20)	intron (NM_001290818, intron 3 of 20)	-9533.0	NM_026720	68423.0	Mm.23642	NM_026720	ENSMUSG00000005986	Ankrd13d	0710001P18Rik|AI430801	ankyrin repeat domain 13 family, member D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-40165168-2	chr10	40165068	40165268	+	608.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22914.0	NM_001114332	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-135640175-2	chr3	135640075	135640275	+	984.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008689, intron 6 of 24)	intron (NM_008689, intron 6 of 24)	51372.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-120914041-4	chr4	120913938	120914138	+	996.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB3|LINE|L1	10967.0	NM_028457	73172.0	Mm.151436	NM_028457	ENSMUSG00000028629	Exo5	3110037I16Rik|AV297100|Dem1|Exo V|mExo5	exonuclease 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-83683626-2	chr12	83683526	83683726	+	565.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_027349)	TTS (NM_027349)	-4526.0	NM_001362271	19164.0	Mm.998	NM_008943	ENSMUSG00000019969	Psen1	Ad3h|PS-1|PS1|S182	presenilin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-109440550-3	chr13	109440450	109440650	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011056, intron 3 of 16)	intron (NM_011056, intron 3 of 16)	115806.0	NR_030644	100124489.0		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-10776545-3	chr18	10776435	10776635	+	818.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144860, intron 11 of 20)	intron (NM_144860, intron 11 of 20)	6441.0	NR_029547	387151.0		NR_029547	ENSMUSG00000065399	Mir133a-1	Mirn133|Mirn133a-1|mir-133a-1	microRNA 133a-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-149248390-2	chr5	149248290	149248490	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16614.0	NM_001308462	11690.0	Mm.19844	NM_009663	ENSMUSG00000060063	Alox5ap	Flap	arachidonate 5-lipoxygenase activating protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-151104970-3	chr1	151104869	151105069	+	916.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus4|LINE|L1	-33065.0	NR_038011	402734.0	Mm.337666	NR_038011		C730036E19Rik	lncLSTR	RIKEN cDNA C730036E19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35094933-3	chr17	35094832	35095032	+	881.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178592, intron 5 of 19)	MIR|SINE|MIR	5641.0	NM_178592	193742.0	Mm.43745	NM_178592	ENSMUSG00000007036	Abhd16a	AI326074|Bat-5|Bat5|D17H6S82E|NG26	abhydrolase domain containing 16A	protein-coding	2.35011334452277	2.65078382649131	2.68860066315278	3.43681777605628	2.88201790730977	1.6129135451024	3.20921114851554	3.51155908842012	0.229124571237035	0.767815332102596	0.998431161219273
Merged-chr11-70234517-2	chr11	70234417	70234617	+	915.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029581)	promoter-TSS (NR_029581)	-200.0	NR_030444	751537.0		NR_030444	ENSMUSG00000105220	Mir497	Mir|Mirn497|mir-497a|mmu-mir-497|mmu-mir-497a	microRNA 497	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-47068022-4	chr7	47067904	47068104	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15220.0	NR_106023	102465639.0		NR_106023	ENSMUSG00000098960	Mir7056	Gm27696|mmu-mir-7056	microRNA 7056	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123893727-4	chr5	123893632	123893832	+	929.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C-int|LTR|ERVK	-13543.0	NM_026603	68184.0	Mm.28549	NM_026603	ENSMUSG00000023106	Denr	1500003K04Rik	density-regulated protein	protein-coding	4.25605077931761	4.88116222977485	3.44126089117553	4.32177243574282	4.97511692671554	5.29256752300963	4.62836632788137	4.97329438351925	0.835391105551962	0.0342387711837599	0.261044754522151
Merged-chr7-99463884-2	chr7	99463809	99464009	+	713.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-2095.0	NM_028145	72184.0	Mm.153585	NM_028145	ENSMUSG00000035298	Klhl35	2810406K13Rik	kelch-like 35	protein-coding	-0.192529980968235	-0.442542199391196	-0.446381734710654	-0.449338515105908	0.260770809693952	-0.441675600786153	-0.267497749841173	-0.448822321073354	1.91228745118718	0.460010433707027	1
Merged-chr1-144313565-4	chr1	144313471	144313671	+	932.30835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64467.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101258087-2	chr15	101257987	101258187	+	649.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8759.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-34071457-4	chr11	34071344	34071544	+	889.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010696, intron 7 of 20)	intron (NM_010696, intron 7 of 20)	24516.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-38517140-2	chr15	38517040	38517240	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301688, intron 1 of 11)	intron (NM_001301688, intron 1 of 11)	2126.0	NM_001301688	54375.0	Mm.250214	NM_018745	ENSMUSG00000037458	Azin1	1700085L02Rik|AZI|Oazi|Oazin	antizyme inhibitor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-107559802-1	chr8	107559702	107559902	+	855.0	f1_balb.idr	Intergenic	B3|SINE|B2	8558.0	NR_029553	387158.0		NR_029553	ENSMUSG00000065439	Mir140	Mirn140|mir-140|mmu-mir-140	microRNA 140	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-51481063-3	chr10	51480991	51481191	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291893, intron 2 of 7)	intron (NM_001291893, intron 2 of 7)	479.0	NM_001291892	14727.0	Mm.439661	NM_008147	ENSMUSG00000112023	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102684915-2	chr12	102684810	102685010	+	754.75	f1_balb.idr|f1_c57bl6.idr	TTS (NR_035457)	TTS (NR_035457)	110.0	NR_035457	100316812.0		NR_035457	ENSMUSG00000089324	Mir1936	mir-1936|mmu-mir-1936	microRNA 1936	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-10039035-3	chr17	10038957	10039157	+	859.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-263191.0	NR_045433	71092.0	Mm.243827	NR_045433		4930452A19Rik	4933424P20Rik	RIKEN cDNA 4930452A19 gene	ncRNA	-0.406933380668079	0.0873715106635828	-0.225898870161093	-0.401962158418971	-0.406194923612884	-0.394178562793032	-0.398100228292365	0.125809016079364	-0.216454357092841	0.932382111932225	1
Merged-chr6-81769241-2	chr6	81769094	81769294	+	646.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	126469.0	NR_106091	102465711.0		NR_106091	ENSMUSG00000106154	Mir7232	mmu-mir-7232	microRNA 7232	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4929020-2	chr19	4928920	4929120	+	572.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133803)	promoter-TSS (NM_133803)	-733.0	NM_133803	75221.0	Mm.234769	NM_133803	ENSMUSG00000063904	Dpp3	4930533O14Rik|C86324|DPP III	dipeptidylpeptidase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-66384420-4	chr7	66384304	66384504	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146191, intron 1 of 33)	(CA)n|Simple_repeat|Simple_repeat	-2680.0	NR_106024	102465640.0		NR_106024	ENSMUSG00000098353	Mir7057	Gm27550|mmu-mir-7057	microRNA 7057	ncRNA	4.48364581841244	4.96707226370937	3.3787747606621	4.93982052731639	4.40047765423186	4.43187665383902	3.01601414398715	4.51789990252968	-0.461068518543969	0.34800935733367	0.847972434867867
Merged-chr2-28917561-2	chr2	28917461	28917661	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355434)	promoter-TSS (NM_001355434)	-893.0	NM_001355434	54422.0	Mm.21390	NM_019446	ENSMUSG00000026805	Barhl1	Dres115|MBH2	BarH like homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126797740-6	chr7	126797613	126797813	+	936.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001177308, exon 2 of 9)	exon (NM_001177308, exon 2 of 9)	1465.0	NM_001177307	11674.0	Mm.275831	NM_007438	ENSMUSG00000030695	Aldoa	Aldo-1|Aldo1	aldolase A, fructose-bisphosphate	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-85823364-3	chr11	85823271	85823471	+	706.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_077059, intron 1 of 4)	intron (NR_077059, intron 1 of 4)	9017.0	NR_077059	69909.0	Mm.440214	NR_077059	ENSMUSG00000087013	2610027K06Rik	-	RIKEN cDNA 2610027K06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-104063717-4	chr9	104063601	104063801	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175324)	promoter-TSS (NM_175324)	-2.0	NM_175324	102632.0	Mm.41274	NM_175324	ENSMUSG00000090150	Acad11	5730439E10Rik|AI987948	acyl-Coenzyme A dehydrogenase family, member 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-105186895-4	chr9	105186774	105186974	+	836.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172461, intron 15 of 15)	intron (NM_172461, intron 15 of 15)	-41792.0	NM_028562	73532.0	Mm.23516	NM_028562	ENSMUSG00000032566	1700080E11Rik	AI429110|Tseg8	RIKEN cDNA 1700080E11 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-88908704-2	chr11	88908604	88908804	+	794.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045955, intron 2 of 4)	B3|SINE|B2	2776.0	NR_045955	73921.0	Mm.439148	NR_045955	ENSMUSG00000087338	Scpep1os	4930405P13Rik	serine carboxypeptidase 1, opposite strand	ncRNA	0.82831610137498	1.2161093279404	0.520513717338858	1.00543306729435	0.308585262901325	0.335155831920258	0.326593930625572	0.319225000103789	-4.43221206929684	0.0146232352804042	1
Merged-chr17-5238066-3	chr17	5237989	5238189	+	797.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 4 of 19)	intron (NM_001085355, intron 4 of 19)	180678.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105460630-2	chr8	105460530	105460730	+	697.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033371, intron 9 of 10)	intron (NM_001033371, intron 9 of 10)	10792.0	NM_026481	67971.0	Mm.29358	NM_026481	ENSMUSG00000014846	Tppp3	2700055K07Rik|CGI-38|Ceacam9|mmCGM8	tubulin polymerization-promoting protein family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-46039547-4	chr11	46039458	46039658	+	993.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14944.0	NM_001291890	11492.0	Mm.89940	NM_009616	ENSMUSG00000011256	Adam19	AL024287|MADDAM|MTLNB|Mltnb	a disintegrin and metallopeptidase domain 19 (meltrin beta)	protein-coding	1.38076230262554	0.668053601664828	1.62428681643118	1.56579827681476	0.957954859029036	0.670871434180234	0.658226524544579	0.846035023194716	-2.75884866207374	0.0760145056719919	0.418358733510348
Merged-chr2-75720802-4	chr2	75720700	75720900	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	-16137.0	NM_010902	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-6148756-2	chr7	6148656	6148856	+	575.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013012, intron 1 of 2)	intron (NM_001013012, intron 1 of 2)	7215.0	NM_001013012	67109.0	Mm.3254	NM_001013012	ENSMUSG00000046792	Zfp787	2210018M03Rik|Znf787	zinc finger protein 787	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-103153476-4	chr2	103153373	103153573	+	972.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	79798.0	NM_019735	56369.0	Mm.24772	NM_019735	ENSMUSG00000010911	Apip	APIP2|CGI-29|Mmrp19	APAF1 interacting protein	protein-coding	1.6964648420423	0.856111775711706	2.52141856447155	1.56690623847016	0.788346247335303	1.96756113784708	0.838442929600924	1.06301808933771	-1.54829261922401	0.248636949018189	0.74758343357745
Merged-chr3-38011383-2	chr3	38011283	38011483	+	695.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	112570.0	NR_040559	626410.0	Mm.389417	NR_040559	ENSMUSG00000106461	Gm20755	-	predicted gene, 20755	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191875909-4	chr1	191875873	191876073	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30808.0	NM_009579	22782.0	Mm.9024	NM_009579	ENSMUSG00000037434	Slc30a1	AI839647|C130040I11Rik|Znt1	solute carrier family 30 (zinc transporter), member 1	protein-coding	4.9536713767967	5.37624859510841	4.12965253878649	5.55219008872047	5.50439419214625	5.47402627277625	4.16296439558548	4.90507971655254	0.012701092276669	0.97441239044247	0.998431161219273
Merged-chr17-34916678-2	chr17	34916578	34916778	+	749.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_023557, exon 2 of 21)	exon (NM_023557, exon 2 of 21)	2212.0	NM_023557	70129.0	Mm.183126	NM_023557	ENSMUSG00000007034	Slc44a4	2210409B01Rik|NG22|mTPPT1	solute carrier family 44, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-57919947-2	chr15	57919847	57920047	+	641.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001167679, exon 3 of 18)	exon (NM_001167679, exon 3 of 18)	7748.0	NM_001356310	210544.0	Mm.390835	NM_199300	ENSMUSG00000022364	Tbc1d31	4B3|D330013L20Rik|Gm85|Wdr67	TBC1 domain family, member 31	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-33158426-4	chr12	33158296	33158496	+	944.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028139, intron 2 of 3)	intron (NM_028139, intron 2 of 3)	10710.0	NM_028139	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	2.47832661780871	3.73202594644029	3.42549221834469	3.11219142858672	2.08096826798419	2.94220268820645	1.83957920272459	2.95470867061408	-1.27315929610269	0.0825126716868694	0.439673063310511
Merged-chr7-27238790-4	chr7	27238701	27238901	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133770, intron 5 of 14)	intron (NM_133770, intron 5 of 14)	5788.0	NM_133770	76889.0	Mm.124728	NM_133770	ENSMUSG00000003762	Coq8b	0610012P18Rik|Adck4	coenzyme Q8B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-49063066-4	chr14	49062968	49063168	+	894.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207214, intron 1 of 17)	intron (NM_207214, intron 1 of 17)	-3481.0	NM_001360070	74385.0	Mm.379235	NM_144535	ENSMUSG00000036291	Ap5m1	4932432K03Rik|Mu5|Mudeng	adaptor-related protein complex 5, mu 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70839056-1	chr8	70838956	70839156	+	1000.0	f1_c57bl6.idr	intron (NM_027560, intron 1 of 7)	CpG	664.0	NM_027560	70807.0	Mm.24215	NM_027560	ENSMUSG00000002910	Arrdc2	4632416I05Rik|Ilad1	arrestin domain containing 2	protein-coding	4.25231792174594	4.63558977854588	3.49822477450813	4.37215082043942	4.74045454581288	5.54814043122156	3.6296997215931	3.99075775446228	0.547552776095727	0.264287555710271	0.766540393250241
Merged-chr17-17826156-5	chr17	17826066	17826266	+	850.56665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4022.0	NR_029536	387230.0		NR_029536	ENSMUSG00000065396	Mir99b	Mirn99b|mmu-mir-99b	microRNA 99b	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-69670414-4	chr3	69670269	69670469	+	758.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR11D|LTR|ERVK	-51686.0	NM_133787	97112.0	Mm.21062	NM_133787	ENSMUSG00000027787	Nmd3	C87860	NMD3 ribosome export adaptor	protein-coding	0.243942842291599	-0.0912232238244552	-0.0955479927816474	0.297434731858594	0.0315502290017636	-0.0902454277367495	-0.0945959530952566	0.405254166130924	-0.161799141726354	0.941378782185177	1
Merged-chr5-21385782-1	chr5	21385682	21385882	+	563.0	f1_c57bl6.idr	intron (NM_029195, intron 2 of 18)	ID_B1|SINE|B4	13109.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-86856908-1	chr4	86856808	86857008	+	1000.0	f1_balb.idr	intron (NM_009096, intron 1 of 4)	CpG	459.0	NM_009096	20104.0	Mm.379007	NM_009096	ENSMUSG00000028495	Rps6	S6R	ribosomal protein S6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-140174001-4	chr4	140173922	140174122	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198610, intron 1 of 9)	intron (NM_198610, intron 1 of 9)	31149.0	NR_153821	102636673.0	Mm.449180	NR_153821		Gm13029	Gm33676	predicted gene 13029	ncRNA	4.99583301184525	4.61600869424213	4.34490891396077	5.19911045778068	4.9722401758439	5.13285370823691	5.80028258009728	5.69975353441908	0.714950419174731	0.0351221784522699	0.26541953317202
Merged-chr11-59297148-3	chr11	59297054	59297254	+	750.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger7|DNA|TcMar-Tigger	-6403.0	NM_009522	22416.0	Mm.1367	NM_009522	ENSMUSG00000009900	Wnt3a	Wnt-3a|vt	wingless-type MMTV integration site family, member 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-29039275-2	chr7	29039175	29039375	+	890.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009109, intron 87 of 105)	MLT1K|LTR|ERVL-MaLR	44419.0	NR_035489	100316710.0		NR_035489	ENSMUSG00000089219	Mir1963	mir-1963|mmu-mir-1963	microRNA 1963	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-10367061-2	chr3	10366961	10367161	+	561.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025519)	promoter-TSS (NM_025519)	88.0	NM_025519	66371.0	Mm.366147	NM_025519	ENSMUSG00000027536	Chmp4c	2010012P02Rik|2210015K02Rik|2310010I16Rik|Shax3|Snf7-3	charged multivesicular body protein 4C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-53909310-4	chr1	53909167	53909367	+	784.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001883, intron 13 of 28)	intron (NM_001001883, intron 13 of 28)	59843.0	NR_106149	102465783.0		NR_106149	ENSMUSG00000098443	Mir7681	Gm27806|mmu-mir-7681	microRNA 7681	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-94195067-4	chr8	94194984	94195184	+	949.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC3|LINE|L1	15995.0	NM_013602	17748.0	Mm.192991	NM_013602	ENSMUSG00000031765	Mt1	MT-I|Mt-1	metallothionein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-15760480-2	chr6	15760380	15760580	+	802.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175088, intron 3 of 4)	intron (NM_175088, intron 3 of 4)	39819.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-94156040-3	chr13	94155896	94156096	+	761.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172589, intron 2 of 3)	intron (NM_172589, intron 2 of 3)	98200.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46574283-2	chr19	46574183	46574383	+	754.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_053196, intron 1 of 11)	intron (NM_053196, intron 1 of 11)	918.0	NM_053196	94279.0	Mm.296837	NM_053196	ENSMUSG00000025036	Sfxn2	C79732|F630107H02Rik	sideroflexin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-102016372-7	chr7	102016316	102016516	+	847.714294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010531, intron 4 of 6)	intron (NM_010531, intron 4 of 6)	1739.0	NM_010531	16068.0	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	0.768265067571807	2.06450845964951	0.595586925306411	1.1724880448542	0.775696211121236	0.617504719215439	1.91392791364543	0.583826670227637	-0.54838882045579	0.716157543341902	0.998431161219273
Merged-chr1-133025351-4	chr1	133025238	133025438	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302803)	promoter-TSS (NM_001302803)	78.0	NR_126506	17248.0	Mm.426531	NM_008575	ENSMUSG00000054387	Mdm4	4933417N07Rik|AA414968|AL023055|AU018793|AU021806|C85810|Mdmx	transformed mouse 3T3 cell double minute 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46731381-2	chr8	46731281	46731481	+	895.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045750, exon 3 of 3)	non-coding (NR_045750, exon 3 of 3)	8134.0	NR_045750	100503498.0	Mm.187358	NR_045750	ENSMUSG00000097534	Gm16675	-	predicted gene, 16675	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-105697341-1	chr4	105697241	105697441	+	551.0	f1_balb.idr	Intergenic	Intergenic	539994.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-9806713-3	chr18	9806616	9806816	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130449, intron 2 of 9)	URR1B|DNA|hAT-Charlie	99068.0	NM_130449	140792.0	Mm.218571	NM_130449	ENSMUSG00000036103	Colec12	CL-P1|SRCL|Scara4	collectin sub-family member 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-24485221-2	chr5	24485121	24485321	+	768.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359881, intron 9 of 15)	CpG	33044.0	NM_139153	213990.0	Mm.250703	NM_139153	ENSMUSG00000023353	Agap3	AGAP-3|AV028425|Centg3|Crag|Crag.|MRIP-1|cnt-g3	ArfGAP with GTPase domain, ankyrin repeat and PH domain 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-36187303-4	chr12	36187206	36187406	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146033, intron 6 of 9)	intron (NM_146033, intron 6 of 9)	30182.0	NM_146033	217473.0	Mm.130422	NM_146033	ENSMUSG00000036188	Ankmy2	AI035571|ZMYND20	ankyrin repeat and MYND domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-50106186-2	chr11	50106086	50106286	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290750, intron 7 of 7)	intron (NM_001290750, intron 7 of 7)	-25174.0	NM_001290759	76795.0	Mm.290975	NM_029745	ENSMUSG00000036644	Tbc1d9b	-	TBC1 domain family, member 9B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-119239434-5	chr4	119239351	119239551	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019782, intron 5 of 15)	intron (NM_019782, intron 5 of 15)	5622.0	NM_001042411	56401.0	Mm.27961	NM_019782	ENSMUSG00000028641	P3h1	2410024C15Rik|Gros1|Lepre1	prolyl 3-hydroxylase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-51650901-4	chr11	51650796	51650996	+	978.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027958)	promoter-TSS (NR_027958)	-58.0	NR_027958	97775.0	Mm.220299	NM_175289	ENSMUSG00000052563	D930048N14Rik	AI315703|R75254	RIKEN cDNA D930048N14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-57791326-4	chr11	57791229	57791429	+	762.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10138.0	NR_131042	76516.0	Mm.28485	NR_131042	ENSMUSG00000087165	2010001A14Rik	-	RIKEN cDNA 2010001A14 gene	ncRNA	2.09574457576894	1.64985231317553	1.92529455637844	2.2193248651615	1.05969769054698	1.15611854241326	2.98831492150514	1.87708669302372	0.158263589326773	0.887407445221971	0.998431161219273
Merged-chr2-167230747-4	chr2	167230637	167230837	+	868.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008968, intron 1 of 9)	intron (NM_008968, intron 1 of 9)	9800.0	NM_008968	19223.0	Mm.2339	NM_008968	ENSMUSG00000017969	Ptgis	Cyp8|Cyp8a1|Pgis	prostaglandin I2 (prostacyclin) synthase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-107684687-2	chr7	107684587	107684787	+	612.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357437, intron 2 of 23)	intron (NM_001357437, intron 2 of 23)	-7156.0	NM_001357438	19024.0	Mm.2817	NM_008905	ENSMUSG00000036528	Ppfibp2	Cclp1	PTPRF interacting protein, binding protein 2 (liprin beta 2)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99446587-2	chr7	99446487	99446687	+	595.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_201352, intron 7 of 17)	intron (NM_201352, intron 7 of 17)	-19417.0	NM_028145	72184.0	Mm.153585	NM_028145	ENSMUSG00000035298	Klhl35	2810406K13Rik	kelch-like 35	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-77709177-4	chr9	77709093	77709293	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45342.0	NR_151778	14629.0	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	3.1215423932912	3.85852647299613	3.08024568021918	4.64365280722878	2.95327573685926	3.88630359901231	2.49861668743431	4.25689118263634	-0.375817707923674	0.552868781399471	0.959564390599126
Merged-chr13-64426409-2	chr13	64426327	64426527	+	713.916687	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-6126.0	NM_053180	105278.0	Mm.74982	NM_053180	ENSMUSG00000021483	Cdk20	4932702G04Rik|AU019450|AW558027|CDCH|Ccrk|PNQLARE|p42	cyclin-dependent kinase 20	protein-coding	-0.345071298777314	-0.577561339517029	-0.580512697450172	-0.194222539322077	-0.585949047600159	-0.396503079103317	-0.579863632391372	-0.43104084976586	-1.10364202934	0.664773740474135	1
Merged-chr2-102882345-4	chr2	102882256	102882456	+	768.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039150, intron 1 of 13)	intron (NM_001039150, intron 1 of 13)	19309.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	-0.814646203414956	-0.948132458442233	-0.260580320090758	-0.961569116139344	-0.964955961651228	-0.945393490738569	-0.957910421812185	-0.96115068189259	-3.02226751932349	0.31744843379996	1
Merged-chr1-74716600-2	chr1	74716500	74716700	+	625.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_024264, intron 1 of 8)	ORR1F-int|LTR|ERVL-MaLR	3065.0	NM_024264	104086.0	Mm.85083	NM_024264	ENSMUSG00000026170	Cyp27a1	1300013A03Rik|Cyp27	cytochrome P450, family 27, subfamily a, polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-20378555-3	chr14	20378460	20378660	+	725.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024512, intron 11 of 13)	intron (NM_001024512, intron 11 of 13)	10350.0	NM_134081	108671.0	Mm.2871	NM_134081	ENSMUSG00000021811	Dnajc9	5330419I01Rik|AU020082	DnaJ heat shock protein family (Hsp40) member C9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-78140203-2	chr5	78140103	78140303	+	590.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	674715.0	NR_131050	69370.0	Mm.426881	NR_131050	ENSMUSG00000107232	1700017L05Rik	-	RIKEN cDNA 1700017L05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-89488385-4	chr13	89488290	89488490	+	926.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52246.0	NM_013500	12950.0	Mm.266790	NM_013500	ENSMUSG00000021613	Hapln1	BB099155|CLP|Crtl1|Crtl1l|LP|LP-1	hyaluronan and proteoglycan link protein 1	protein-coding	1.93976306340826	1.72287545991437	2.41069895321547	2.25119775074419	1.95570006350779	1.73454461580998	2.43002627525599	1.22236448466766	-0.501644591804775	0.617503784594355	0.977517868708383
Merged-chr14-75828589-2	chr14	75828489	75828689	+	641.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	16375.0	NR_045294	100043189.0	Mm.426329	NR_045294		Gm4285	-	predicted gene 4285	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71345055-2	chr8	71344955	71345155	+	846.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001142322, intron 19 of 39)	B4A|SINE|B4	-21793.0	NM_001145780	67023.0	Mm.41890	NM_025917	ENSMUSG00000002395	Use1	2010315L10Rik|5730403H22Rik|AV002165|D12|Ed2|Q-snare|p31	unconventional SNARE in the ER 1 homolog (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-120307996-2	chr14	120307896	120308096	+	786.583313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360376, intron 1 of 8)	intron (NM_001360376, intron 1 of 8)	1544.0	NM_001360376	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-109475946-2	chr4	109475846	109476046	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013876, intron 1 of 2)	intron (NM_013876, intron 1 of 2)	559.0	NM_013876	29864.0	Mm.392580	NM_013876	ENSMUSG00000028557	Rnf11	-	ring finger protein 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-112271044-2	chr10	112270944	112271144	+	693.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359752)	promoter-TSS (NM_001359752)	-77.0	NM_001359752	268345.0	Mm.336242	NM_001025581	ENSMUSG00000035681	Kcnc2	AW047325|B230117I07|KShIIIA|Kv3.2	potassium voltage gated channel, Shaw-related subfamily, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-73004342-5	chr2	73004160	73004360	+	883.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-23814.0	NM_001018042	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-46834054-4	chr7	46833947	46834147	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11757.0	NM_010699	16828.0	Mm.29324	NM_010699	ENSMUSG00000063229	Ldha	Ldh1|Ldhm|l7R2	lactate dehydrogenase A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-128204935-2	chr7	128204835	128205035	+	603.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_009943)	TTS (NM_009943)	1431.0	NM_009943	12862.0	Mm.43824	NM_009943	ENSMUSG00000030785	Cox6a2	CoxVIaH|VIaH	cytochrome c oxidase subunit VIa polypeptide 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-102678710-4	chr13	102678608	102678808	+	915.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14839.0	NM_001360519	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-37098654-1	chr9	37098554	37098754	+	904.0	f0_balb.idr	intron (NM_001029838, intron 1 of 12)	intron (NM_001029838, intron 1 of 12)	48668.0	NM_148950	208076.0	Mm.260335	NM_148950	ENSMUSG00000035934	Pknox2	D230005H23Rik|Prep2	Pbx/knotted 1 homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-120038809-4	chr1	120038704	120038904	+	978.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001012322, intron 5 of 13)	intron (NM_001012322, intron 5 of 13)	31824.0	NM_001012322	319229.0	Mm.189223	NM_001012322	ENSMUSG00000026387	Sctr	6530402O03Rik	secretin receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71603164-3	chr8	71603083	71603283	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166213, intron 8 of 14)	intron (NM_001166213, intron 8 of 14)	5537.0	NM_001166213	100037278.0	Mm.482159	NM_001166213	ENSMUSG00000043243	Fam129c	Bcnp1	family with sequence similarity 129, member C	protein-coding	4.36641727847971	5.33337034119939	5.52919364147125	4.70180864178245	3.34001133543763	2.47770181633579	3.74190943443081	2.96760802483027	-2.41945613678825	5.29054694736889e-07	3.83927312144346e-05
Merged-chr6-34340670-4	chr6	34340556	34340756	+	996.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13490.0	NM_008012	14187.0	Mm.5378	NM_008012	ENSMUSG00000029762	Akr1b8	FR-1|Fgfrp|Fgrp	aldo-keto reductase family 1, member B8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-97106691-3	chr9	97106590	97106790	+	839.9722289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138756, intron 1 of 6)	intron (NM_138756, intron 1 of 6)	4351.0	NM_138756	192287.0	Mm.228067	NM_138756	ENSMUSG00000032449	Slc25a36	C330005L02Rik	solute carrier family 25, member 36	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36719640-1	chr18	36719540	36719740	+	541.0	f1_c57bl6.idr	Intergenic	B1F2|SINE|Alu	7175.0	NM_009841	12475.0	Mm.3460	NM_009841	ENSMUSG00000051439	Cd14	-	CD14 antigen	protein-coding	0.925690676318927	1.33195223295113	0.512143287299124	0.503720413591622	0.491650643632096	1.22648829371858	0.514533979279844	1.32589921064443	0.369492116025812	0.829790154811744	0.998431161219273
Merged-chr7-126809207-4	chr7	126809103	126809303	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-7682.0	NM_026884	68952.0	Mm.440393	NM_026884	ENSMUSG00000058966	Fam57b	1500016O10Rik|A330104J06Rik|AI413816|AW060769	family with sequence similarity 57, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101679806-3	chr7	101679695	101679895	+	732.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009191, intron 2 of 15)	intron (NM_009191, intron 2 of 15)	16027.0	NM_009191	20480.0	Mm.3990	NM_009191	ENSMUSG00000001829	Clpb	AL118244|Skd3	ClpB caseinolytic peptidase B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5073798-3	chr19	5073708	5073908	+	619.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5730.0	NM_054042	70445.0	Mm.29597	NM_054042	ENSMUSG00000056481	Cd248	2610111G01Rik|AI842296|Cd164l1|Tem1	CD248 antigen, endosialin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-173218981-4	chr2	173218895	173219095	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021394)	promoter-TSS (NM_021394)	-73.0	NM_001139519	58203.0	Mm.116687	NM_021394	ENSMUSG00000027514	Zbp1	2010010H03Rik|Dai|Dlm1|mZaDLM	Z-DNA binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150513548-2	chr4	150513448	150513648	+	717.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 10 of 22)	RSINE1|SINE|B4	138626.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-69006077-4	chr8	69005969	69006169	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-82667.0	NM_007509	11966.0	Mm.249096	NM_007509	ENSMUSG00000006273	Atp6v1b2	AI194269|AI790362|Atp6b2|HO57|R74844	ATPase, H+ transporting, lysosomal V1 subunit B2	protein-coding	5.35880851815292	6.07388446261665	6.27402700007476	5.36767536599584	5.37264398269867	5.44825207959882	4.80816766529973	5.21126232660496	-0.670647855718747	0.029306604643546	0.233479842306285
Merged-chr18-5143422-2	chr18	5143322	5143522	+	749.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	22309.0	NR_153824	102637682.0	Mm.451914	NR_153824		Gm26682	Gm38715	predicted gene, 26682	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-57973674-2	chr1	57973574	57973774	+	770.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-3590.0	NM_001159865	51960.0	Mm.339711	NM_030211	ENSMUSG00000054770	Kctd18	4932411A20Rik|6530404F10Rik	potassium channel tetramerisation domain containing 18	protein-coding	0.0197611766753534	0.367420515373256	0.457227192818685	0.0258462409255513	0.472515599537864	0.0354030011825357	0.342554948105912	0.0264886124362634	0.0158362758197005	0.994039399589694	1
Merged-chr4-40757850-4	chr4	40757731	40757931	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021535)	promoter-TSS (NM_021535)	54.0	NM_021535	74255.0	Mm.289929	NM_021535	ENSMUSG00000028409	Smu1	2600001O03Rik|2610203K23Rik|AB044414|AI845086|AW556129|Bwd	smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-123926295-4	chr9	123926199	123926399	+	964.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42393.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35378667-2	chr17	35378564	35378764	+	952.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001143689)	promoter-TSS (NM_001143689)	-953.0	NM_001143689	15015.0	Mm.464284	NM_001143689	ENSMUSG00000035929	H2-Q4	H-2Q4|H2-Gs10|Qa-4|Qa4|Qat-4|Qb-1|Qb1	histocompatibility 2, Q region locus 4	protein-coding	0.960989100360114	0.822718814579288	0.287019933184475	0.459984499990182	0.271999633331299	1.07677045265735	0.288784389908124	0.281908723559667	-0.652799632196855	0.730805863976273	1
Merged-chr18-63864032-3	chr18	63863925	63864125	+	717.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001014981, intron 20 of 27)	intron (NM_001014981, intron 20 of 27)	155330.0	NM_001014981	104082.0	Mm.30850	NM_001014981	ENSMUSG00000040560	Wdr7	AI462727|TRAG|mKIAA0541	WD repeat domain 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-148807174-2	chr3	148807074	148807274	+	713.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	147461.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-96364501-4	chr9	96364404	96364604	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007502)	promoter-TSS (NM_007502)	-73.0	NM_001357212	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	-0.372630159355338	-0.353049539440943	0.0297740237697503	-0.364316455694181	-0.371384146764866	-0.351634344795697	0.800281771691395	-0.363449953187926	2.19842480928351	0.383147530475737	1
Merged-chr5-66069238-4	chr5	66069159	66069359	+	684.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139065, intron 2 of 6)	intron (NM_139065, intron 2 of 6)	28920.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-64640235-2	chr14	64640135	64640335	+	542.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12296.0	NM_001081177	16554.0	Mm.23611	NM_001081177	ENSMUSG00000060012	Kif13b	5330429L19Rik|6030414C01|AI429803|C130021D12Rik|GAKIN	kinesin family member 13B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-116632207-4	chr4	116632149	116632349	+	829.974976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-4298.0	NM_016777	50927.0	Mm.257181	NM_016777	ENSMUSG00000028693	Nasp	5033430J04Rik|AI131596|AI317140|D4Ertd767e|Epcs32|Nasp-T	nuclear autoantigenic sperm protein (histone-binding)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-121946097-3	chr5	121945998	121946198	+	797.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007804, intron 2 of 22)	intron (NM_007804, intron 2 of 22)	97101.0	NM_001359949	231717.0	Mm.12654	NM_175474	ENSMUSG00000044134	Fam109a	A230106M15Rik|AU017694|IPIP27A|Ses1	family with sequence similarity 109, member A	protein-coding	0.684948847736746	0.971994536261807	1.12294823583391	1.83938254933534	0.688021667160682	0.979104132300356	1.13282118860536	1.85116739708824	0.0319076390395621	0.982148985365966	0.998431161219273
Merged-chr18-19512710-1	chr18	19512610	19512810	+	542.0	f1_c57bl6.idr	Intergenic	RLTR26_Mus|LTR|ERVK	489387.0	NM_007882	13507.0	Mm.89935	NM_007882	ENSMUSG00000059898	Dsc3	5430426I24Rik	desmocollin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-68301289-2	chr18	68301189	68301389	+	712.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153794)	promoter-TSS (NM_153794)	869.0	NM_001361003	67897.0	Mm.27544	NM_026440	ENSMUSG00000009535	Rnmt	2610002P10Rik|AI848273|Rg7mt1|mKIAA0398	RNA (guanine-7-) methyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-113658550-2	chr6	113658450	113658650	+	709.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 2 of 11)	intron (NM_001113553, intron 2 of 11)	20083.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-105000862-4	chr3	105000758	105000958	+	755.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39149.0	NM_009520	22414.0	Mm.10740	NM_009520	ENSMUSG00000027840	Wnt2b	Wnt13	wingless-type MMTV integration site family, member 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-95797803-4	chr15	95797696	95797896	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 1 of 19)	intron (NM_175344, intron 1 of 19)	6953.0	NM_001253813	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45567913-3	chr7	45567797	45567997	+	939.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_025330)	TTS (NM_025330)	-2256.0	NM_009737	12036.0	Mm.24210	NM_009737	ENSMUSG00000030826	Bcat2	Bcat(m)|Bcat-2|Eca40	branched chain aminotransferase 2, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127553001-2	chr10	127552902	127553102	+	782.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 60 of 88)	intron (NM_008512, intron 60 of 88)	-18443.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	0.499566064540455	0.703070722538743	-0.192626684009914	-0.197306317989605	-0.203968175501102	-0.185250492702842	-0.191294031579503	-0.196486765584286	-3.99558501372725	0.0960389951741383	1
Merged-chr15-84231287-4	chr15	84231197	84231397	+	988.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133167)	promoter-TSS (NM_133167)	-746.0	NM_133167	170736.0	Mm.323892	NM_133167	ENSMUSG00000022438	Parvb	AI595373|AW742462|D15Gsk1|affixin	parvin, beta	protein-coding	2.23285172020075	1.90618531507212	2.66598725132037	2.35569471487069	1.96599758926808	1.53224614535757	1.6892367607107	1.45260709133588	-1.74999483068516	0.0681602007575267	0.391910266144795
Merged-chr7-29442002-3	chr7	29441920	29442120	+	936.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081028, intron 2 of 22)	intron (NM_001081028, intron 2 of 22)	63440.0	NM_001081028	74206.0	Mm.447042	NM_001081028	ENSMUSG00000030583	Sipa1l3	2610511M17Rik	signal-induced proliferation-associated 1 like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76899862-4	chr15	76899768	76899968	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025536)	promoter-TSS (NM_025536)	-73.0	NM_025536	66398.0	Mm.291716	NM_025536	ENSMUSG00000055041	Commd5	2310065H03Rik|AI854466|D15Ertd81e|Hcarg	COMM domain containing 5	protein-coding	-1.05877568042897	-1.03501312238488	-1.04817210678232	-1.05426068996071	-1.05810152525527	-1.03216151557194	-0.188696606725984	-1.05378786495764	3.16074139804981	0.330468818528456	1
Merged-chr7-65469744-2	chr7	65469644	65469844	+	555.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-98500.0	NM_009386	21872.0	Mm.4342	NM_009386	ENSMUSG00000030516	Tjp1	ZO1	tight junction protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-122950958-4	chr9	122950860	122951060	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010620)	promoter-TSS (NM_010620)	40.0	NM_025419	66202.0	Mm.268307	NM_025419	ENSMUSG00000032551	1110059G10Rik	-	RIKEN cDNA 1110059G10 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-81321413-2	chr7	81321313	81321513	+	622.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008803, intron 17 of 21)	intron (NM_008803, intron 17 of 21)	23821.0	NM_009092	20068.0	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-40125359-4	chr10	40125263	40125463	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 1 of 5)	intron (NM_001114332, intron 1 of 5)	16891.0	NM_028247	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-111310146-4	chr9	111310048	111310248	+	865.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	HAL1|LINE|L1	-1591.0	NM_001164659	320429.0	Mm.270754	NM_001164659	ENSMUSG00000062296	Trank1	A230061D21Rik|C030048J01Rik|Gm187|Lba1	tetratricopeptide repeat and ankyrin repeat containing 1	protein-coding	1.56784698429722	1.16294935878608	0.911011090315994	2.01848011606733	1.92009733995031	1.3652517943584	0.914750710498188	1.42793578008532	-0.10412359488871	0.935852437606209	0.998431161219273
Merged-chr9-20995324-2	chr9	20995224	20995424	+	770.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-7413.0	NM_023167	66163.0	Mm.427576	NM_023167	ENSMUSG00000003299	Mrpl4	1110017G11Rik	mitochondrial ribosomal protein L4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-6410262-4	chr7	6410168	6410368	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4907.0	NM_001134752	100042450.0	Mm.416919	NM_001134752	ENSMUSG00000093536	Smim17	Gm16532	small integral membrane protein 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-72181224-2	chr5	72181124	72181324	+	677.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13035.0	NM_001356614	27784.0	Mm.44223	NM_178599	ENSMUSG00000029213	Commd8	C77770|D5Buc26e	COMM domain containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-40663260-4	chr19	40663166	40663366	+	990.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009848, intron 1 of 9)	intron (NM_009848, intron 1 of 9)	3496.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-107324336-2	chr11	107324236	107324436	+	546.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359616, intron 2 of 8)	intron (NM_001359616, intron 2 of 8)	-134955.0	NM_001161329	68979.0	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153090750-4	chr2	153090640	153090840	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17728.0	NM_001172117	15162.0	Mm.715	NM_010407	ENSMUSG00000003283	Hck	AI849071|Bmk	hemopoietic cell kinase	protein-coding	3.78088916100651	4.65472736457301	4.23335315384612	3.84741610046475	5.09381192210914	5.37479253273174	4.0664453700388	4.30890652944882	0.823331367848051	0.0602896376406139	0.36313005643177
Merged-chr8-6142726-1	chr8	6142626	6142826	+	557.0	f1_c57bl6.idr	Intergenic	Intergenic	-1037439.0	NM_011388	20494.0	Mm.3500	NM_011388	ENSMUSG00000023073	Slc10a2	9130221J18Rik|AI605518|ASBT|IBAT|ISBT	solute carrier family 10, member 2	protein-coding	2.70139936823123	2.18456104555418	2.51536685283688	2.04577333600417	1.69881744904074	1.23564412598537	1.20699045786294	2.05675055609856	-2.0817230566296	0.0422337547357258	0.29426282771152
Merged-chr4-53114035-2	chr4	53113935	53114135	+	613.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 5 of 49)	intron (NM_013454, intron 5 of 49)	45860.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-164083807-4	chr2	164083708	164083908	+	894.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021420, intron 3 of 10)	intron (NM_021420, intron 3 of 10)	9630.0	NM_021420	58231.0	Mm.234472	NM_021420	ENSMUSG00000018209	Stk4	AI447339|AU020804|Kas-2|Mst1|Ysk3	serine/threonine kinase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-59928581-4	chr4	59928474	59928674	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13518.0	NM_021053	30936.0	Mm.284433	NM_021053	ENSMUSG00000028386	Slc46a2	5430429N04Rik|Ly110|TSO-1C12|Tscot	solute carrier family 46, member 2	protein-coding	4.2037999784846	4.52141415194889	4.03969564609419	4.49593278630399	4.04714018121093	3.81770482193144	3.77545839694985	4.07318256130692	-0.524909761620627	0.212506770073031	0.702047781144169
Merged-chr15-31586672-4	chr15	31586581	31586781	+	858.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181588, intron 4 of 5)	intron (NM_181588, intron 4 of 5)	14858.0	NM_001348035	12465.0	Mm.282158	NM_007637	ENSMUSG00000022234	Cct5	CCT-epsilon|Ccte|TCP-1-epsilon|TCPE|mKIAA0098	chaperonin containing Tcp1, subunit 5 (epsilon)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3686757-4	chr19	3686645	3686845	+	955.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008513)	promoter-TSS (NM_008513)	-181.0	NM_008513	16973.0	Mm.274581	NM_008513	ENSMUSG00000024913	Lrp5	BMND1|HBM|LR3|LRP7|OPPG|mKIAA4142	low density lipoprotein receptor-related protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128871867-4	chr2	128871725	128871925	+	962.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024237, intron 1 of 7)	intron (NM_024237, intron 1 of 7)	7893.0	NM_024237	70370.0	Mm.5107	NM_024237	ENSMUSG00000027386	Fbln7	1600015H20Rik|AI464334|TM14	fibulin 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-25318855-2	chr5	25318755	25318955	+	967.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081383, intron 35 of 58)	Lx2B2|LINE|L1	72482.0	NM_001359890	231050.0	Mm.246718	NM_144908	ENSMUSG00000038072	Galnt11	A430075I06Rik|AI648252|E430002F06Rik	polypeptide N-acetylgalactosaminyltransferase 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-144289784-2	chr2	144289684	144289884	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	18880.0	NM_001355688	74528.0	Mm.386817	NM_028984	ENSMUSG00000027424	Mgme1	8430406I07Rik|AI426476	mitochondrial genome maintenance exonuclease 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-73172028-2	chr14	73171928	73172128	+	780.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134083, intron 10 of 14)	intron (NM_134083, intron 10 of 14)	29243.0	NR_033185	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52982131-2	chr13	52982031	52982231	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1092.0	NM_017373	18030.0	Mm.136604	NM_017373	ENSMUSG00000056749	Nfil3	AV225605|E4BP4	nuclear factor, interleukin 3, regulated	protein-coding	-0.73428542253146	-0.724498605925236	-0.727712433322492	-0.308406471629701	-0.733676550276079	-0.723773189141397	-0.727004212961365	-0.195327852850623	0.441262738279742	0.882069886315526	1
Merged-chr2-172447437-2	chr2	172447337	172447537	+	587.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025542, intron 5 of 8)	intron (NM_025542, intron 5 of 8)	6859.0	NM_025542	66404.0	Mm.25157	NM_025542	ENSMUSG00000027502	Rtf2	1700067C04Rik|2410001C21Rik|5730427M17Rik|AA589417|Rtfdc1	replication termination factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-125519381-5	chr1	125519270	125519470	+	830.960022	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41225.0	NM_001356294	74150.0	Mm.28654	NM_028787	ENSMUSG00000026342	Slc35f5	1300003P13Rik|AI646727	solute carrier family 35, member F5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-86166371-4	chr15	86166274	86166474	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145475, intron 1 of 12)	intron (NM_145475, intron 1 of 12)	-19354.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80199663-4	chr10	80199543	80199743	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 1 of 4)	intron (NR_038088, intron 1 of 4)	20161.0	NM_007909	13637.0	Mm.1478	NM_007909	ENSMUSG00000003070	Efna2	CEK7L|Elf1|Epl6|Eplg6|Lerk6	ephrin A2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-46480697-4	chr11	46480610	46480810	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_134250, exon 7 of 7)	3' UTR (NM_134250, exon 7 of 7)	25779.0	NM_134250	171285.0	Mm.72168	NM_134250	ENSMUSG00000020399	Havcr2	TIM-3|Tim3|Timd3	hepatitis A virus cellular receptor 2	protein-coding	3.95696545916119	3.62568966615532	2.734025357137	3.72731389156435	5.04938121177162	4.49896856094349	4.71523762017807	2.81583175517757	1.21387321338799	0.0290125080732082	0.231546832724403
Merged-chr4-146484881-2	chr4	146484781	146484981	+	752.916626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17119.0	NM_001243138	100041433.0	Mm.441741	NM_001243138	ENSMUSG00000056300	Zfp981	Gm13247	zinc finger protein 981	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-110919801-4	chr8	110919691	110919891	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009179)	promoter-TSS (NM_009179)	-74.0	NM_009179	20444.0	Mm.200388	NM_009179	ENSMUSG00000031749	St3gal2	AI429591|AW822065|ST3GalII|Siat5	ST3 beta-galactoside alpha-2,3-sialyltransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-146968137-4	chr1	146968031	146968231	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	470444.0	NM_001145807	215378.0	Mm.441817	NM_153539	ENSMUSG00000035131	Brinp3	B830045N13Rik|Fam5c	bone morphogenetic protein/retinoic acid inducible neural specific 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-92733563-3	chr13	92733475	92733675	+	656.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61243.0	NM_011582	21828.0	Mm.20865	NM_011582	ENSMUSG00000021702	Thbs4	TSP4	thrombospondin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-8840618-4	chr19	8840555	8840755	+	999.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290823, intron 1 of 10)	intron (NM_001290823, intron 1 of 10)	152.0	NM_001290823	14705.0	Mm.345134	NM_008144	ENSMUSG00000071657	Bscl2	2900097C17Rik|AI046355|Gng3lg	Berardinelli-Seip congenital lipodystrophy 2 (seipin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-9377538-4	chr18	9377401	9377601	+	910.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026484, intron 3 of 9)	intron (NM_026484, intron 3 of 9)	72653.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	-0.973244663428994	-0.952315594721777	-0.00450891433157474	-0.968117103546747	-0.972477992091202	-0.949249181104308	-0.963262521912125	-0.967581074445158	-3.30458610020401	0.291235735201707	1
Merged-chr11-76562330-4	chr11	76562210	76562410	+	964.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198894, intron 1 of 22)	intron (NM_198894, intron 1 of 22)	9074.0	NM_198895	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70455248-2	chr11	70455148	70455348	+	788.333374	f1_balb.idr|f1_c57bl6.idr	TTS (NM_023158)	TTS (NM_023158)	3317.0	NM_025397	66172.0	Mm.46424	NM_025397	ENSMUSG00000018923	Med11	1110030J09Rik|AI465144|AW545069	mediator complex subunit 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-65239173-2	chr2	65239073	65239273	+	653.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027225)	promoter-TSS (NM_027225)	-547.0	NM_027225	319876.0	Mm.34159	NM_027225	ENSMUSG00000034903	Cobll1	1810047P18Rik|Coblr1|D430044D16Rik	Cobl-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-96398387-2	chr9	96398265	96398465	+	778.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33934.0	NM_001357212	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	0.115285751146025	0.140993196634379	0.338696943424009	1.25447540420377	0.11692079308327	0.712364628847838	0.344390679364048	0.127334135551969	-1.20453313426103	0.53892824573727	1
Merged-chr15-100714706-1	chr15	100714606	100714806	+	675.0	f0_balb.idr	intron (NM_001161768, intron 3 of 11)	intron (NM_001161768, intron 3 of 11)	5771.0	NM_001161768	207839.0	Mm.22969	NM_172451	ENSMUSG00000037280	Galnt6	4632410F13|AW047994|GalNAc-T6	polypeptide N-acetylgalactosaminyltransferase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-149286161-3	chr5	149286048	149286248	+	850.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009663, intron 4 of 4)	intron (NM_009663, intron 4 of 4)	21144.0	NM_009663	11690.0	Mm.19844	NM_009663	ENSMUSG00000060063	Alox5ap	Flap	arachidonate 5-lipoxygenase activating protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-127087454-3	chr2	127087346	127087546	+	886.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026678, intron 5 of 7)	RMER6B|LTR|ERVK	16789.0	NM_026678	109778.0	Mm.22028	NM_026678	ENSMUSG00000001999	Blvra	0610006A11Rik|2500001N03Rik|Blvr	biliverdin reductase A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-89051852-3	chr5	89051753	89051953	+	629.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359212, intron 3 of 22)	intron (NM_001359212, intron 3 of 22)	23887.0	NM_001359213	54403.0	Mm.41044	NM_018760	ENSMUSG00000060961	Slc4a4	AI835705|NBC|NBC1	solute carrier family 4 (anion exchanger), member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-11762227-4	chr11	11762112	11762312	+	970.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025597, intron 7 of 7)	intron (NM_001025597, intron 7 of 7)	46750.0	NM_021891	60530.0	Mm.236114	NM_021891	ENSMUSG00000035455	Fignl1	-	fidgetin-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-11450882-3	chr8	11450802	11451002	+	877.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27027.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45365535-2	chr7	45365435	45365635	+	780.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015480)	promoter-TSS (NR_015480)	-626.0	NR_015480	50994.0	Mm.389897	NM_016664	ENSMUSG00000091510	Mtag2	MAG	metastasis associated gene 2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-66748912-2	chr16	66748812	66749012	+	551.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178721, intron 7 of 9)	Lx8|LINE|L1	91794.0	NR_040512	75501.0	Mm.394300	NR_040512	ENSMUSG00000092599	1700010K23Rik	-	RIKEN cDNA 1700010K23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-103945090-4	chr2	103945001	103945201	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12894.0	NM_001142337	16909.0	Mm.29266	NM_008505	ENSMUSG00000032698	Lmo2	Rbtn-2|Rbtn2|Rhom-2|Ttg2	LIM domain only 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-73044291-4	chr9	73044195	73044395	+	927.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023635)	promoter-TSS (NM_023635)	-515.0	NM_023635	11891.0	Mm.34867	NM_023635	ENSMUSG00000032202	Rab27a	2210402C08Rik|2410003M20Rik|4933437C11Rik|ash	RAB27A, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-45081787-1	chr12	45081687	45081887	+	898.5	f0_balb.idr	Intergenic	Intergenic	-7304.0	NM_144552	217517.0	Mm.285400	NM_144552	ENSMUSG00000046314	Stxbp6	BC024598|C85317	syntaxin binding protein 6 (amisyn)	protein-coding	1.11554194457397	0.779404093383165	0.59066378201449	0.58526230585826	0.835191863587579	0.599301704615713	1.14751223813789	1.34447406716643	1.27182729513212	0.435420138443871	1
Merged-chr19-29465594-2	chr19	29465494	29465694	+	706.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021396, intron 5 of 5)	RMER1A|Other|Other	54675.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85600505-3	chr12	85600431	85600631	+	951.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205053, intron 1 of 3)	intron (NM_001205053, intron 1 of 3)	513.0	NM_001205053	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91072252-2	chr2	91072152	91072352	+	683.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1937.0	NM_001290765	68427.0	Mm.192375	NM_026721	ENSMUSG00000002105	Slc39a13	1100001L14Rik|AA387663|ZIP-13|ZIP13	solute carrier family 39 (metal ion transporter), member 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-114697990-2	chr5	114697890	114698090	+	866.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-7055.0	NM_019821	56356.0	Mm.275766	NM_019821	ENSMUSG00000011884	Gltp	1110001F24Rik|C76925|C77564	glycolipid transfer protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-88864657-4	chr11	88864577	88864777	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001042541)	promoter-TSS (NM_001042541)	-91.0	NM_001042541	11640.0	Mm.2969	NM_009648	ENSMUSG00000018428	Akap1	AKAP121|AKAP84|Akap|C76494|C81186|DAKAP1|S-AKAP84	A kinase (PRKA) anchor protein 1	protein-coding	3.59403968999352	2.70261389503522	4.03437497353708	3.03117764491725	3.62226611247973	3.45348275338078	3.03481809537519	2.82050276627846	-0.275772683367139	0.652089146003911	0.986434615290108
Merged-chr4-8691761-6	chr4	8691748	8691948	+	935.4027710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001277149, intron 1 of 37)	CpG	1442.0	NM_001277149	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-116765603-2	chr14	116765503	116765703	+	588.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-159694.0	NM_001079844	23888.0	Mm.440025	NM_011821	ENSMUSG00000058571	Gpc6	-	glypican 6	protein-coding	-1.56355737717652	-1.81244775989375	-1.82128546162293	-1.82854501295842	-1.83962066705452	-1.81053259306168	-1.81928479966835	-1.82724555674025	-1.28500227969968	0.715751224811686	1
Merged-chr7-43668334-4	chr7	43668211	43668411	+	905.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR33|LTR|ERVK	-3720.0	NM_145582	233189.0	Mm.26514	NM_145582	ENSMUSG00000038888	Ctu1	Atpbd3|BC005752	cytosolic thiouridylase subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115302614-2	chr5	115302514	115302714	+	789.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_131932, intron 1 of 1)	B3|SINE|B2	1494.0	NR_131932	102639268.0	Mm.319998	NR_131932		Gm13830	-	predicted gene 13830	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-38481160-2	chr3	38481060	38481260	+	660.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001167883, intron 2 of 3)	ORR1E|LTR|ERVL-MaLR	3656.0	NM_001167883	99696.0	Mm.290937	NM_001033198	ENSMUSG00000044864	Ankrd50	AI662170|E430012K20Rik|mKIAA1223|mKIAA3019	ankyrin repeat domain 50	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-37270212-4	chr17	37270219	37270419	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013819)	promoter-TSS (NM_013819)	85.0	NM_013819	14991.0	Mm.14437	NM_013819	ENSMUSG00000016206	H2-M3	H-2M3|Hmt|M3a|MuprM3|MuprM301|MuprM302|R4B2	histocompatibility 2, M region locus 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-112522058-2	chr12	112521958	112522158	+	798.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10898.0	NM_178915	104885.0	Mm.37751	NM_178915	ENSMUSG00000054013	Tmem179	AI839735	transmembrane protein 179	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115534483-4	chr5	115534451	115534651	+	877.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011223, intron 1 of 10)	B1_Mus2|SINE|Alu	-24916.0	NM_007475	11837.0	Mm.5286	NM_007475	ENSMUSG00000067274	Rplp0	36B4|Arbp|L10E	ribosomal protein, large, P0	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-32554931-4	chr11	32554814	32555014	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 1 of 18)	intron (NM_009288, intron 1 of 18)	21648.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-35678431-2	chr2	35678331	35678531	+	584.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290637, intron 3 of 16)	intron (NM_001290637, intron 3 of 16)	-13563.0	NM_001001602	69601.0	Mm.29629	NM_001001602	ENSMUSG00000026883	Dab2ip	2310011D08Rik|AI480459|Aip1|mKIAA1743	disabled 2 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-73811634-2	chr18	73811539	73811739	+	880.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145494, intron 1 of 15)	intron (NM_145494, intron 1 of 15)	3753.0	NM_145494	107029.0	Mm.36817	NM_145494	ENSMUSG00000024556	Me2	AW120568|D030040L20Rik|NAD-ME	malic enzyme 2, NAD(+)-dependent, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139536343-2	chr5	139536232	139536432	+	842.166626	f1_balb.idr|f1_c57bl6.idr	intron (NR_040701, intron 2 of 3)	intron (NR_040701, intron 2 of 3)	-7566.0	NM_013702	22255.0	Mm.42190	NM_013702	ENSMUSG00000029546	Uncx	Chx4|Uncx4.1	UNC homeobox	protein-coding	-0.574049040224471	-0.563755355083771	-0.567140583789313	-0.158836676945873	-0.4326755647566	-0.0773073579570004	-0.566395010402631	-0.5692896359391	0.622095998119609	0.815766167734643	1
Merged-chr14-14068823-4	chr14	14068718	14068918	+	968.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139227, intron 4 of 11)	intron (NM_139227, intron 4 of 11)	52086.0	NM_025550	66413.0	Mm.27591	NM_025550	ENSMUSG00000021737	Psmd6	2400006A19Rik	proteasome (prosome, macropain) 26S subunit, non-ATPase, 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95293020-2	chr3	95292920	95293120	+	657.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_133858, intron 6 of 9)	intron (NM_133858, intron 6 of 9)	10085.0	NM_199475	75007.0	Mm.279287	NM_133858	ENSMUSG00000038712	Mindy1	1810005H09Rik|4930504E06Rik|AA562754|AA960384|AW561904|Fam63a|cI-40|mKIAA1390|ni	MINDY lysine 48 deubiquitinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-126609363-1	chr3	126609263	126609463	+	564.0	f1_c57bl6.idr	intron (NM_001025438, intron 2 of 18)	intron (NM_001025438, intron 2 of 18)	12412.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-79481653-4	chr14	79481546	79481746	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018765)	promoter-TSS (NM_018765)	-378.0	NM_018765	22380.0	Mm.476813	NM_018765	ENSMUSG00000022023	Wbp4	AW545037|BB101031|FBP21	WW domain binding protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-86884815-4	chr12	86884699	86884899	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145836)	promoter-TSS (NM_145836)	15.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-20475186-1	chr11	20475086	20475286	+	602.0	f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-68067.0	NM_021372	58172.0	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-110781974-3	chr5	110781792	110781992	+	667.733337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1277.0	NM_001025562	56361.0	Mm.23528	NM_019700	ENSMUSG00000029507	Pus1	A730013B20Rik|MPUS1|mPus1p	pseudouridine synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-18613614-3	chr3	18613549	18613749	+	739.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	-133172.0	NR_040544	73959.0	Mm.60616	NR_040544	ENSMUSG00000102699	4930433B08Rik	-	RIKEN cDNA 4930433B08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-59598799-4	chr9	59598705	59598905	+	959.43335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361099, intron 2 of 10)	(TTC)n|Simple_repeat|Simple_repeat	9517.0	NM_001311092	76183.0	Mm.265415	NM_175235	ENSMUSG00000032297	Celf6	6330569O16Rik|Brunol6	CUGBP, Elav-like family member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-73160811-3	chr14	73160710	73160910	+	898.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033185, intron 5 of 15)	MTB_Mm|LTR|ERVL-MaLR	18025.0	NR_033185	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-150451520-3	chr2	150451416	150451616	+	865.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310645)	promoter-TSS (NM_001310645)	-15.0	NM_001310645	668923.0	Mm.393876	NM_001177550	ENSMUSG00000068130	Zfp442	ZIPO-II	zinc finger protein 442	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-39771054-4	chr15	39770978	39771178	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022722, intron 9 of 9)	intron (NM_022722, intron 9 of 9)	25148.0	NM_001289508	75766.0	Mm.159563	NM_029422	ENSMUSG00000022303	Dcstamp	4833414I07Rik|DC-STAMP|FIND|Tm7sf4|mDC-STAMP	dendrocyte expressed seven transmembrane protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-56378117-4	chr18	56378036	56378236	+	753.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22204.0	NM_001360917	107022.0	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|Gramd2b|NS3TP2	GRAM domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107770481-1	chr9	107770381	107770581	+	777.0	f0_balb.idr	non-coding (NR_153190, exon 1 of 24)	non-coding (NR_153190, exon 1 of 24)	521.0	NM_148930	83486.0	Mm.259197	NM_148930	ENSMUSG00000032580	Rbm5	D030069N10Rik	RNA binding motif protein 5	protein-coding	0.0876376030162683	-0.0491764864074595	-0.0553631003270257	0.866010826052482	0.544884136416512	-0.0477866943402515	-0.053995586911456	-0.059320900838494	-1.00151360970363	0.655075168239869	1
Merged-chr16-78303095-3	chr16	78303024	78303224	+	640.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025192, intron 1 of 6)	intron (NM_001025192, intron 1 of 6)	1453.0	NM_001276263	13052.0	Mm.66222	NM_009988	ENSMUSG00000022865	Cxadr	2610206D03Rik|AU016810|AW553441|CAR|MCAR|MCVADR	coxsackie virus and adenovirus receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115420545-2	chr11	115420445	115420645	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027862)	promoter-TSS (NM_027862)	419.0	NM_183285	70382.0	Mm.276299	NM_183285	ENSMUSG00000016940	Kctd2	2310012I15Rik	potassium channel tetramerisation domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-99302264-4	chr10	99302138	99302338	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39007.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106780791-2	chr11	106780691	106780891	+	929.25	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007840, exon 13 of 13)	3' UTR (NM_007840, exon 13 of 13)	-1254.0	NM_015810	50776.0	Mm.859	NM_015810	ENSMUSG00000020718	Polg2	mtPolB|p55|polG-beta	polymerase (DNA directed), gamma 2, accessory subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-15046788-3	chr9	15046701	15046901	+	781.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-1323.0	NM_019482	55991.0	Mm.142253	NM_019482	ENSMUSG00000031934	Panx1	AI847747	pannexin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-26972607-2	chr2	26972507	26972707	+	716.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290463)	promoter-TSS (NM_001290463)	-809.0	NM_001290464	279028.0	Mm.330084	NM_001001322	ENSMUSG00000014852	Adamts13	ADAM-TS13|ADAMTS-13|Gm710|vWF-CP	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167301213-2	chr2	167301113	167301313	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_019835, exon 9 of 9)	3' UTR (NM_019835, exon 9 of 9)	47965.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-73863613-3	chr18	73863512	73863712	+	946.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360973)	promoter-TSS (NM_001360973)	17.0	NM_001360973	71263.0	Mm.126220	NM_027741	ENSMUSG00000064036	Mro	4930507C04Rik|4933435E20Rik	maestro	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44551331-4	chr9	44551238	44551438	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24917.0	NM_007551	12145.0	Mm.6246	NM_007551	ENSMUSG00000047880	Cxcr5	Blr1|CXC-R5|CXCR-5|Gpcr6|MDR15	chemokine (C-X-C motif) receptor 5	protein-coding	2.13803406625026	2.60734042952198	2.31879666026173	1.8751091221088	2.56872043846784	1.34952286005108	2.33709455248579	1.72042192988459	-0.387826867514023	0.683070840059945	0.995882295196263
Merged-chr18-45040701-2	chr18	45040601	45040801	+	688.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3_Mus|LINE|L1	212036.0	NM_001163013	240255.0	Mm.244482	NM_001163013	ENSMUSG00000034653	Ythdc2	3010002F02Rik|BC037178	YTH domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-52851000-4	chr12	52850912	52851112	+	979.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198111, intron 2 of 13)	intron (NM_198111, intron 2 of 13)	151629.0	NM_198111	238161.0	Mm.310822	NM_198111	ENSMUSG00000061603	Akap6	AI482140|Akapalpha|Akapbeta|PRKA	A kinase (PRKA) anchor protein 6	protein-coding	1.01579002505304	0.853957954022709	1.33124824059046	1.07693864006452	1.12624121779361	0.659085631051694	0.650008760722296	1.08325266450778	-0.873318326306047	0.554347150125631	1
Merged-chr2-164858947-2	chr2	164858847	164859047	+	763.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-1239.0	NM_011125	18830.0	Mm.6105	NM_011125	ENSMUSG00000017754	Pltp	Bpife|OD107	phospholipid transfer protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-45387653-4	chr14	45387580	45387780	+	719.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019425, intron 1 of 5)	intron (NM_019425, intron 1 of 5)	1116.0	NM_019425	54342.0	Mm.312945	NM_019425	ENSMUSG00000037722	Gnpnat1	AU017428|AU040593|EMeg32|Gpnat1|Gsnpat	glucosamine-phosphate N-acetyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-72217252-4	chr11	72217135	72217335	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001163728, exon 1 of 1)	3' UTR (NM_001163728, exon 1 of 1)	-1643.0	NM_026068	67279.0	Mm.159496	NM_026068	ENSMUSG00000020801	Med31	3110004H13Rik|CGI-125|l11Jus15	mediator complex subunit 31	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-77440658-2	chr11	77440558	77440758	+	998.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177710, intron 12 of 14)	intron (NM_177710, intron 12 of 14)	-23255.0	NM_139129	216961.0	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-48994204-4	chr11	48994102	48994302	+	849.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1956.0	NM_011579	21822.0	Mm.15793	NM_011579	ENSMUSG00000078922	Tgtp1	Gtp2|Irgb6|Mg21|Tgtp	T cell specific GTPase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28435117-4	chr17	28435024	28435224	+	945.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010220, intron 3 of 10)	intron (NM_010220, intron 3 of 10)	51025.0	NM_010220	14229.0	Mm.276405	NM_010220	ENSMUSG00000024222	Fkbp5	D17Ertd592e|Dit1|FKBP-5|FKBP51	FK506 binding protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-122289810-4	chr7	122289672	122289872	+	937.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316672, intron 1 of 16)	CpG	647.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-34762441-2	chr18	34762341	34762541	+	665.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357457, intron 1 of 3)	MER117|DNA|hAT-Charlie	3114.0	NM_001357457	66306.0	Mm.29424	NM_175104	ENSMUSG00000034300	Fam53c	2810012G03Rik|Gm21179	family with sequence similarity 53, member C	protein-coding	-1.1306715186527	-1.10797379294626	-1.11906441266486	-1.12746538082009	-0.983028288140964	-1.10557040938762	-1.11655373946004	-0.585566221273974	2.70127814494298	0.400998399340136	1
Merged-chr17-26544573-3	chr17	26544490	26544690	+	984.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16922.0	NM_026170	67458.0	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	-1.17367364971587	-1.14665061133654	-1.15856004380685	-1.16834280623128	-1.17310571790619	-1.14406978763884	-0.42938571406771	-1.16659169643457	2.89727187181404	0.396361616615464	1
Merged-chr1-191025505-3	chr1	191025437	191025637	+	965.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_027298, exon 1 of 2)	non-coding (NR_027298, exon 1 of 2)	186.0	NR_027298	100125339.0	Mm.472263	NR_027298	ENSMUSG00000097845	A230020J21Rik	-	RIKEN cDNA A230020J21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-164913252-1	chr2	164913152	164913352	+	1000.0	f1_balb.idr	Intergenic	Intergenic	-1502.0	NM_199027	329559.0	Mm.330776	NM_199027	ENSMUSG00000039834	Zfp335	1810045J01Rik|NIF-1|Nif1|Znf335	zinc finger protein 335	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-102034813-2	chr5	102034713	102034913	+	904.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 2 of 66)	intron (NM_172882, intron 2 of 66)	35108.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120788314-2	chr11	120788214	120788414	+	601.833374	f1_balb.idr|f1_c57bl6.idr	TTS (NM_026824)	TTS (NM_026824)	3799.0	NM_145370	209318.0	Mm.30195	NM_145370	ENSMUSG00000025156	Gps1	Cops1|Csn1|R75577|Sgn1	G protein pathway suppressor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116627803-3	chr11	116627710	116627910	+	911.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172572)	promoter-TSS (NM_172572)	-791.0	NM_172572	217344.0	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-23430776-1	chr18	23430676	23430876	+	1000.0	f0_balb.idr	intron (NM_001361217, intron 1 of 20)	intron (NM_001361217, intron 1 of 20)	15367.0	NM_001361217	13527.0	Mm.94371	NM_010087	ENSMUSG00000024302	Dtna	2210407P21Rik|DTN-A|Dtn|Gm19389|a-DB-1|adbn	dystrobrevin alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-99977773-9	chr5	99977516	99977716	+	865.074097	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077265, intron 1 of 8)	intron (NM_001077265, intron 1 of 8)	1322.0	NM_001077266	11991.0	Mm.150231	NM_007516	ENSMUSG00000000568	Hnrnpd	Auf1|Hnrpd	heterogeneous nuclear ribonucleoprotein D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-70568828-3	chr16	70568740	70568940	+	986.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028803, intron 15 of 15)	intron (NM_028803, intron 15 of 15)	-47585.0	NR_040474	52645.0	Mm.188475	NR_040474		D16Ertd519e	-	DNA segment, Chr 16, ERATO Doi 519, expressed	ncRNA	1.72526178336605	1.15505952728057	1.13066397137045	2.24052938380299	1.73977189354005	2.31639577119841	1.74447459321128	2.33650845348625	1.10309891041371	0.317881286315169	0.8209499039712
Merged-chr5-130852326-4	chr5	130852269	130852469	+	757.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	403577.0	NM_021371	140904.0	Mm.40875	NM_021371	ENSMUSG00000060371	Caln1	9630012C17Rik|Cabp8|MNCb-0849	calneuron 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-21913555-4	chr16	21913453	21913653	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172821, intron 8 of 12)	Lx8b|LINE|L1	21584.0	NM_172821	71751.0	Mm.420837	NM_172821	ENSMUSG00000033618	Map3k13	C130026N12Rik|LZK	mitogen-activated protein kinase kinase kinase 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-4149373-4	chr7	4149270	4149470	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175529, exon 1 of 1)	exon (NM_175529, exon 1 of 1)	502.0	NM_175529	243813.0	Mm.347643	NM_175529	ENSMUSG00000043432	Leng9	9530024C23Rik|F630035L11Rik	leukocyte receptor cluster (LRC) member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-93447475-2	chr3	93447375	93447575	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001163098, exon 2 of 2)	exon (NM_001163098, exon 2 of 2)	5145.0	NM_001163098	99681.0	Mm.316671	NM_001163098	ENSMUSG00000052415	Tchh	AHF|AI597080|Thh	trichohyalin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21978258-2	chr9	21978158	21978358	+	953.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023622, intron 9 of 18)	B3A|SINE|B2	11195.0	NM_023622	71746.0	Mm.110594	NM_023622	ENSMUSG00000040146	Rgl3	1300003D20Rik|mFLJ00153	ral guanine nucleotide dissociation stimulator-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91263827-2	chr2	91263727	91263927	+	758.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001289678, exon 10 of 11)	exon (NM_001289678, exon 10 of 11)	-1288.0	NM_001166024	77038.0	Mm.43636	NM_023854	ENSMUSG00000027255	Arfgap2	2310032E02Rik|Zfp289	ADP-ribosylation factor GTPase activating protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-63608985-3	chr9	63608895	63609095	+	895.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151671, intron 1 of 9)	intron (NR_151671, intron 1 of 9)	6349.0	NR_151671	66939.0	Mm.34338	NM_025857	ENSMUSG00000037257	Aagab	2310007F21Rik|p34	alpha- and gamma-adaptin binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-23358676-2	chr16	23358576	23358776	+	667.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001252506, exon 7 of 7)	3' UTR (NM_001252506, exon 7 of 7)	68206.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-126109798-4	chr4	126109667	126109867	+	999.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028800, intron 1 of 10)	intron (NM_028800, intron 1 of 10)	5810.0	NM_001145827	74178.0	Mm.440269	NM_028800	ENSMUSG00000042608	Stk40	2310004N11Rik|AI428792	serine/threonine kinase 40	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-58744651-4	chr15	58744546	58744746	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	78781.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83657283-3	chr6	83657176	83657376	+	959.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-1160.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	3.00151985623788	3.99352881241478	2.70119362476051	2.62133030711261	3.5082132912175	2.82070756674465	2.85725381834977	3.61687319442396	0.0864861104212294	0.895021135439839	0.998431161219273
Merged-chr16-43574207-4	chr16	43574102	43574302	+	887.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285805, intron 7 of 10)	intron (NM_001285805, intron 7 of 10)	-66453.0	NR_030576	100124467.0		NR_030576	ENSMUSG00000076372	Mir568	Mirn568|mmu-mir-568	microRNA 568	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67620226-4	chr10	67620122	67620322	+	954.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-48263.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128535363-4	chr10	128535265	128535465	+	849.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	-9506.0	NM_011843	23943.0	Mm.66056	NM_011843	ENSMUSG00000025366	Esyt1	Fam62a|Mbc2|vp115	extended synaptotagmin-like protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-7299545-4	chr7	7299449	7299649	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302386)	promoter-TSS (NM_001302386)	8.0	NM_001302387	12727.0	Mm.297883	NM_011334	ENSMUSG00000000605	Clcn4	Clc4-2|Clcn4-2|clC-4	chloride channel, voltage-sensitive 4	protein-coding	2.81501601989118	2.20052196036766	1.31849033076402	2.83585062601855	2.40402625497017	2.21716489271981	1.32637147629282	2.52927224358175	-0.509764868926452	0.606582767156619	0.974576632476413
Merged-chr18-19201429-2	chr18	19201329	19201529	+	591.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4A|LINE|L1	800668.0	NM_007882	13507.0	Mm.89935	NM_007882	ENSMUSG00000059898	Dsc3	5430426I24Rik	desmocollin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-89971255-1	chr9	89971155	89971355	+	540.0	f1_balb.idr	intron (NM_001357743, intron 8 of 26)	intron (NM_001357743, intron 8 of 26)	61480.0	NM_001357743	19417.0	Mm.44561	NM_011245	ENSMUSG00000032356	Rasgrf1	AI844718|CDC25|CDC25Mm|Gnrp|Grf1|Grfbeta|P190-A|Ras-GRF1|p190|p190RhoGEF	RAS protein-specific guanine nucleotide-releasing factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-107105406-1	chr11	107105306	107105506	+	577.0	f1_c57bl6.idr	intron (NM_001359590, intron 2 of 27)	B3|SINE|B2	26516.0	NM_176850	207165.0	Mm.343986	NM_176850	ENSMUSG00000040481	Bptf	9430093H17Rik|Falz	bromodomain PHD finger transcription factor	protein-coding	0.172699528765611	-0.339022989824654	-0.342684810869153	-0.345496560963807	0.00674525457448791	-0.33819484871904	-0.341878859926226	-0.05803785660509	0.132572336411132	0.958168145586221	1
Merged-chr2-170219279-2	chr2	170219179	170219379	+	819.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-76604.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-108753700-2	chr12	108753600	108753800	+	654.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur2|SINE|Alu	-39611.0	NM_009537	22632.0	Mm.3868	NM_009537	ENSMUSG00000021264	Yy1	AW488674|NF-E1	YY1 transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-12943686-1	chr7	12943586	12943786	+	655.0	f0_balb.idr	Intergenic	B3A|SINE|B2	16270.0	NM_029809	381845.0	Mm.439896	NM_029809	ENSMUSG00000033967	Rnf225	2310014L17Rik|AV237412|C77118	ring finger protein 225	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-110590241-2	chr7	110590141	110590341	+	969.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177324, intron 1 of 40)	intron (NM_177324, intron 1 of 40)	24679.0	NM_177324	319934.0	Mm.102970	NM_177324	ENSMUSG00000038371	Sbf2	4833411B01Rik|AA414977|AI317167|B430219L04Rik|Mtmr13|mMTMH1	SET binding factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-6426057-1	chr15	6425957	6426157	+	715.5	f0_balb.idr	intron (NM_001008702, intron 9 of 13)	intron (NM_001008702, intron 9 of 13)	-19276.0	NM_013485	12279.0	Mm.29095	NM_013485	ENSMUSG00000022149	C9	-	complement component 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-77451638-4	chr8	77451550	77451750	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030113, intron 1 of 22)	intron (NM_030113, intron 1 of 22)	-65406.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-4386161-2	chr12	4386061	4386261	+	620.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010881, intron 2 of 22)	intron (NM_010881, intron 2 of 22)	91021.0	NM_010881	17977.0	Mm.301039	NM_010881	ENSMUSG00000020647	Ncoa1	KAT13A|NCoA-1|NRC-1|SRC-1|SRC-a|SRC1|bHLHe74|mNRC-1	nuclear receptor coactivator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-75065491-4	chr14	75065408	75065608	+	953.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030568, intron 2 of 3)	intron (NR_030568, intron 2 of 3)	49481.0	NM_198642	271221.0	Mm.320280	NM_198642	ENSMUSG00000034959	Rubcnl	5031414D18Rik|Gm744|Gm911|Kiaa0226l	RUN and cysteine rich domain containing beclin 1 interacting protein like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-160250105-3	chr2	160250010	160250210	+	901.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	77384.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70758734-2	chr8	70758634	70758834	+	760.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_009001)	TTS (NM_009001)	2187.0	NM_183170	234384.0	Mm.213010	NM_183170	ENSMUSG00000035559	Mpv17l2	Fksg24	MPV17 mitochondrial membrane protein-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-30502711-4	chr16	30502594	30502794	+	962.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47884.0	NM_172614	224090.0	Mm.241459	NM_172614	ENSMUSG00000022537	Tmem44	1700007N03Rik|9330161C17Rik|B230220N21	transmembrane protein 44	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-125582144-1	chr7	125582044	125582244	+	618.0	f1_balb.idr	Intergenic	Intergenic	-21285.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	1.82417076943678	1.7152667702845	2.75787341463135	1.92582088437913	1.54601795845392	2.0717460488385	1.20573689254423	2.69210253057327	-0.272594305427104	0.790770576042462	0.998431161219273
Merged-chr6-40594992-4	chr6	40594890	40595090	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9185.0	NM_001038604	23845.0	Mm.103765	NM_021364	ENSMUSG00000029915	Clec5a	Clecsf5|Ly100|MDL-1|Mdl1	C-type lectin domain family 5, member a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-27489133-2	chr7	27489031	27489231	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_018820, intron 1 of 1)	intron (NM_018820, intron 1 of 1)	2178.0	NM_018820	55942.0	Mm.153684	NM_018820	ENSMUSG00000008384	Sertad1	1110032C13Rik|AV000455|AW456625|Sei-1|Sei1|TRIP-Br1	SERTA domain containing 1	protein-coding	-1.5061220274826	-1.47360709383584	-1.48343987814663	-1.49151681994238	-1.50383953926072	-1.47147628845725	-1.0170701920923	-1.49007105122263	2.15652851593596	0.535359572134045	1
Merged-chr12-36156926-4	chr12	36156780	36156980	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025840)	promoter-TSS (NM_025840)	-55.0	NM_025840	66912.0	Mm.288669	NM_025840	ENSMUSG00000020547	Bzw2	1110001I24Rik|Bdm2|HSPC028	basic leucine zipper and W2 domains 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-95210289-2	chr10	95210189	95210389	+	616.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001330138, intron 2 of 2)	intron (NM_001330138, intron 2 of 2)	-64464.0	NR_131146	628062.0		NR_131146	ENSMUSG00000112481	Gm29684	-	predicted gene, 29684	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-24589808-2	chr15	24589708	24589908	+	831.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	823956.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-46127993-4	chr11	46127877	46128077	+	956.116699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311209)	promoter-TSS (NM_001311209)	73.0	NM_001311209	11492.0	Mm.89940	NM_009616	ENSMUSG00000011256	Adam19	AL024287|MADDAM|MTLNB|Mltnb	a disintegrin and metallopeptidase domain 19 (meltrin beta)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25316710-4	chr7	25316616	25316816	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001160400)	promoter-TSS (NM_001160400)	-448.0	NM_001160400	269878.0	Mm.38527	NM_001160400	ENSMUSG00000045039	Megf8	AW049492|Egfl4|b2b1702.2Clo|b2b1702Clo|b2b288Clo|m687Ddg|mKIAA0817	multiple EGF-like-domains 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28012985-4	chr17	28012870	28013070	+	895.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181413, intron 12 of 24)	intron (NM_181413, intron 12 of 24)	67614.0	NM_001357681	21463.0	Mm.29758	NM_013687	ENSMUSG00000062859	Tcp11	D17Ken1|Tcp-11	t-complex protein 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-94526943-4	chr16	94526863	94527063	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007834)	promoter-TSS (NM_007834)	-334.0	NM_007834	13185.0	Mm.7472	NM_007834	ENSMUSG00000022898	Dscr3	AW538125|Dcra	DSCR3 arrestin fold containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100948905-2	chr11	100948805	100949005	+	843.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-9365.0	NM_011486	20848.0	Mm.249934	NM_011486	ENSMUSG00000004040	Stat3	1110034C02Rik|AW109958|Aprf	signal transducer and activator of transcription 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-88478579-3	chr16	88478497	88478697	+	652.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28381.0	NM_181490	239931.0	Mm.126860	NM_181490	ENSMUSG00000055811	Cldn17	-	claudin 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-61704677-2	chr9	61704577	61704777	+	741.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	209833.0	NM_018853	56040.0	Mm.3158	NM_018853	ENSMUSG00000007892	Rplp1	2410042H16Rik|Arpp1|C430017H15Rik	ribosomal protein, large, P1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-9541343-3	chr1	9541210	9541410	+	702.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4098.0	NM_021511	59014.0	Mm.29061	NM_021511	ENSMUSG00000061024	Rrs1	5730466A07Rik|AA415037|D1Ertd701e|Rrr	ribosome biogenesis regulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153149011-2	chr2	153148911	153149111	+	598.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_010407, exon 12 of 13)	exon (NM_010407, exon 12 of 13)	-12290.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36783161-4	chr18	36783055	36783255	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001305627)	promoter-TSS (NM_001305627)	50.0	NM_008214	15115.0	Mm.10528	NM_008214	ENSMUSG00000001380	Hars	MMHRS	histidyl-tRNA synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78864053-4	chr15	78863949	78864149	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-8520.0	NM_025622	107753.0	Mm.390793	NM_025622	ENSMUSG00000043501	Lgals2	2200008F12Rik|AI324147	lectin, galactose-binding, soluble 2	protein-coding	3.99018897297219	4.00638920555732	4.07668481991078	3.90393678896114	3.2852204477876	4.47037574624107	4.33460731609139	4.10412819198211	0.158090848381909	0.730628697444124	0.998431161219273
Merged-chr4-120851175-3	chr4	120851077	120851277	+	749.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3622.0	NM_182929	242662.0	Mm.192502	NM_182929	ENSMUSG00000032890	Rims3	A730060M23Rik|Nim3|Rim3|mKIAA0237	regulating synaptic membrane exocytosis 3	protein-coding	3.1470717289133	1.97171664257693	2.98163277559939	3.31124128397373	2.67125568279545	2.74321601151685	3.56315065183803	3.17891370638635	0.239351165936791	0.729581592747255	0.998431161219273
Merged-chr5-23617852-3	chr5	23617749	23617949	+	653.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359174, intron 2 of 16)	MIRb|SINE|MIR	-1278.0	NM_009274	20817.0	Mm.288728	NM_009274	ENSMUSG00000062604	Srpk2	AW226533|AW492537|AW547358|Wbp6|mSRPK2	serine/arginine-rich protein specific kinase 2	protein-coding	1.64206447907181	1.03300961428602	1.7851033502275	1.73275146703826	1.65589137643165	1.03658411287804	1.55469608242712	1.74200941221052	-0.191243890932782	0.874173405990052	0.998431161219273
Merged-chr6-89340775-3	chr6	89340704	89340904	+	881.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008881, intron 8 of 31)	intron (NM_008881, intron 8 of 31)	21809.0	NM_008881	18844.0	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-53344027-1	chr15	53343927	53344127	+	761.0	f0_balb.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	2156.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4914811-2	chr16	4914711	4914911	+	821.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357062, intron 5 of 17)	intron (NM_001357062, intron 5 of 17)	-24300.0	NM_001316715	66911.0	Mm.428698	NM_025839	ENSMUSG00000022516	Nudt16l1	1110001K21Rik|5330437I08Rik|Sdos	nudix (nucleoside diphosphate linked moiety X)-type motif 16-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135779834-2	chr5	135779734	135779934	+	789.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008617, intron 1 of 8)	intron (NM_008617, intron 1 of 8)	1185.0	NM_008617	17448.0	Mm.297096	NM_008617	ENSMUSG00000019179	Mdh2	MDH|Mdh-2|Mor-1|Mor1	malate dehydrogenase 2, NAD (mitochondrial)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-12118592-4	chr15	12118472	12118672	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358823, intron 2 of 18)	CpG-4794	721.0	NM_001358823	22763.0	Mm.273496	NM_011767	ENSMUSG00000022201	Zfr	C920030H05Rik	zinc finger RNA binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-104336588-2	chr8	104336488	104336688	+	745.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-4006.0	NM_024217	68119.0	Mm.390108	NM_024217	ENSMUSG00000031875	Cmtm3	9430096L06Rik|AI413895|BNAS2|Cklfsf3	CKLF-like MARVEL transmembrane domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-21237248-3	chr11	21237165	21237365	+	770.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1767.0	NM_139061	245944.0	Mm.170103	NM_139061	ENSMUSG00000020128	Vps54	Hcc8|Vps54l|mSLP8|wr	VPS54 GARP complex subunit	protein-coding	-0.25351591097034	-0.378900422343516	-0.382711366720002	-0.385642388820752	-0.128769464291635	0.225029967460565	-0.208032995125385	-0.385130927033508	2.65792762341159	0.2603743443096	1
Merged-chr6-145359782-3	chr6	145359826	145360026	+	990.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27699.0	NR_003625	381827.0	Mm.179075	NM_001001987		1700073E17Rik	-	ribosomal protein L7 pseudogene	pseudo	1.13334080576123	0.99041802470727	0.959282624472424	0.934103338591928	2.61827142145656	2.30571504943332	2.79678726988906	1.76608494982467	5.05866975847662	0.000131285575131401	0.0038232143942392
Merged-chr9-118898995-2	chr9	118898895	118899095	+	594.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_133721, exon 28 of 28)	3' UTR (NM_133721, exon 28 of 28)	-27541.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-93960222-3	chr10	93960137	93960337	+	852.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3626.0	NR_029764	723908.0		NR_029764	ENSMUSG00000065607	Mir331	Mirn331|mmu-mir-331	microRNA 331	ncRNA	2.83079808747688	2.4192462745334	2.70603444012981	2.72876931359787	2.04130657496591	2.43653740552232	2.49468100729621	3.13189176125027	-0.17805473635163	0.813209396252198	0.998431161219273
Merged-chr6-86785013-4	chr6	86784946	86785146	+	872.81665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013471, intron 1 of 12)	B4A|SINE|B4	8538.0	NM_013471	11746.0	Mm.259702	NM_013471	ENSMUSG00000029994	Anxa4	AI265406|AIV|AW106930|Anx4|Xanx-4	annexin A4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52574408-4	chr13	52574248	52574448	+	955.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1123.0	NR_046069	100040572.0	Mm.278873	NR_046069		Gm2848	-	predicted gene 2848	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-87424680-2	chr11	87424580	87424780	+	606.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_031386, intron 1 of 30)	B1_Mus1|SINE|Alu	-2911.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-57593928-3	chr16	57593816	57594016	+	938.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025599, intron 1 of 9)	intron (NM_025599, intron 1 of 9)	12951.0	NM_025599	66497.0	Mm.425976	NM_025599	ENSMUSG00000022748	Cmss1	1110001A06Rik|2610528E23Rik|4930572F24Rik|AV099812|AV122629	cms small ribosomal subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-44941688-3	chr8	44941594	44941794	+	630.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8514.0	NM_001081286	14107.0	Mm.27365	NM_001081286	ENSMUSG00000070047	Fat1	2310038E12Rik|AU023433|Fath|mFat1	FAT atypical cadherin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-124755047-2	chr2	124754947	124755147	+	978.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	101466.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-91094475-2	chr1	91094386	91094586	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008515, intron 10 of 22)	intron (NM_008515, intron 10 of 22)	41042.0	NM_001310732	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167887893-6	chr2	167887771	167887971	+	923.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44456.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-78397120-4	chr2	78397018	78397218	+	983.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	159571.0	NM_177843	329436.0	Mm.235448	NM_177843		Gm14461	A830093M07	predicted gene 14461	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89887850-3	chr3	89887887	89888087	+	627.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010559, intron 3 of 9)	intron (NM_010559, intron 3 of 9)	25209.0	NM_001310676	16194.0	Mm.2856	NM_010559	ENSMUSG00000027947	Il6ra	CD126|IL-6R|IL-6R-alpha|IL-6RA|Il6r	interleukin 6 receptor, alpha	protein-coding	-0.766386961910391	-0.1397975944526	-0.759744357077971	-0.59652216577407	-0.765771126267369	-0.755769206665514	-0.759029362094161	-0.593814980840989	-2.20090211089983	0.422986897698962	1
Merged-chr13-41355727-2	chr13	41355627	41355827	+	609.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111324, intron 2 of 7)	intron (NM_001111324, intron 2 of 7)	3274.0	NM_017464	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19131575-4	chr7	19131465	19131665	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175530, intron 1 of 1)	intron (NM_175530, intron 1 of 1)	11706.0	NM_175530	243867.0	Mm.230830	NM_175530	ENSMUSG00000050428	Fbxo46	20D7-FC4|4932704E22Rik|Fbxo34l	F-box protein 46	protein-coding	5.7243484249548	5.08315253651438	5.70028837716005	5.49077068431169	5.23469050537781	5.71281974467232	5.98480126111058	6.04602907457608	0.277991637133944	0.326162705800051	0.828154362547589
Merged-chr9-99498496-2	chr9	99498396	99498596	+	569.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028768, intron 16 of 21)	intron (NM_028768, intron 16 of 21)	28075.0	NR_028123	69797.0	Mm.307159	NR_028123	ENSMUSG00000046242	1600029I14Rik	-	RIKEN cDNA 1600029I14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-60738104-4	chr13	60737993	60738193	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 18 of 26)	intron (NM_134062, intron 18 of 26)	48271.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	6.21784299485469	5.79267328802601	6.27352241458924	6.06442018997679	6.32286078855079	6.57888375132424	6.51954077327491	6.14247397207443	0.318520192959417	0.145016869068283	0.594909640442646
Merged-chr2-126707277-4	chr2	126707174	126707374	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252580)	promoter-TSS (NM_001252580)	-54.0	NM_001252580	84092.0	Mm.272629	NM_019729	ENSMUSG00000027363	Usp8	AI574262|AW557536|Ubpy|mKIAA0055	ubiquitin specific peptidase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-13836247-2	chr16	13836147	13836347	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_010946)	TTS (NM_010946)	16996.0	NM_001346111	18203.0	Mm.380410	NM_010946	ENSMUSG00000022681	Ntan1	PNAA|PNAD	N-terminal Asn amidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-155592008-2	chr2	155591908	155592108	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008180, intron 1 of 12)	intron (NM_008180, intron 1 of 12)	802.0	NM_001291111	14854.0	Mm.252316	NM_008180	ENSMUSG00000027610	Gss	AI314904|GS-A/GS-B|GSH-S	glutathione synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5150894-3	chr17	5150795	5150995	+	885.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 4 of 19)	intron (NM_001085355, intron 4 of 19)	155821.0	NM_001085355	239985.0	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-5300228-4	chr9	5300148	5300348	+	887.3666380000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009807, intron 3 of 9)	intron (NM_009807, intron 3 of 9)	1731.0	NM_009807	12362.0	Mm.1051	NM_009807	ENSMUSG00000025888	Casp1	ICE|Il1bc	caspase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-64088558-4	chr15	64088446	64088646	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001276462, exon 28 of 28)	3' UTR (NM_001276462, exon 28 of 28)	-28098.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-65046541-2	chr1	65046441	65046641	+	680.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4622.0	NM_007777	12968.0	Mm.258170	NM_007777	ENSMUSG00000070870	Cryge	Cryg-2|Cryg-6|DGcry-2|Elo	crystallin, gamma E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-32564375-2	chr11	32564265	32564465	+	701.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 2 of 18)	intron (NM_009288, intron 2 of 18)	31099.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	1.80796110123999	1.19150378068606	3.07385724156108	2.04447192766948	2.49320442839777	1.48016931798309	1.43327398426016	2.05585606998442	-0.646823886661947	0.539690900934497	0.954403851908463
Merged-chr2-163605059-2	chr2	163604959	163605159	+	578.416626	f1_balb.idr|f1_c57bl6.idr	intron (NR_131225, intron 1 of 3)	intron (NR_131225, intron 1 of 3)	-2153.0	NM_001305803	76080.0	Mm.89828	NM_029512	ENSMUSG00000017679	Ttpal	3110080A02Rik|5830472M02Rik	tocopherol (alpha) transfer protein-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-8143186-4	chr8	8143104	8143304	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	517569.0	NM_010111	13642.0	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	5.03575529191265	5.26671097829743	5.00473392446014	5.20870446845326	4.76046759779824	4.89472533506526	4.92111887178027	4.74302127291001	-0.362125617765788	0.242324621140331	0.739349184581178
Merged-chr10-19087241-4	chr10	19087152	19087352	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54497.0	NR_038021	100504265.0	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	-2.18308165884198	-2.15547475440471	-2.16382331017202	-2.1706810624505	-2.18114370519566	-2.15366558754311	-2.03057248461154	-2.16945352807143	0.759018020146679	0.829933115115583	1
Merged-chr1-41105463-2	chr1	41105363	41105563	+	608.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	75789.0	NR_040475	74897.0	Mm.243822	NR_040475	ENSMUSG00000104072	4930448I06Rik	-	RIKEN cDNA 4930448I06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-158028455-7	chr2	158028385	158028585	+	969.4285890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291136)	promoter-TSS (NM_001291136)	-12.0	NM_001291134	70470.0	Mm.290810	NM_027434	ENSMUSG00000027651	Rprd1b	2610304G08Rik|2810446G03Rik|Crept	regulation of nuclear pre-mRNA domain containing 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80704641-2	chr10	80704541	80704741	+	736.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027829, intron 8 of 9)	intron (NM_027829, intron 8 of 9)	1948.0	NM_027829	71564.0	Mm.35802	NM_027829	ENSMUSG00000055862	Izumo4	9030607L17Rik|AI550407	IZUMO family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88043075-4	chr3	88042981	88043181	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001110809)	promoter-TSS (NM_001110809)	-25.0	NM_025663	66614.0	Mm.46029	NM_025663	ENSMUSG00000028069	Gpatch4	2610029K21Rik|Gpatc4	G patch domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-16424924-1	chr5	16424824	16425024	+	542.0	f0_balb.idr	Intergenic	RMER13B|LTR|ERVK	-128571.0	NM_001289460	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-97498540-2	chr15	97498440	97498640	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	207282.0	NM_028003	71919.0	Mm.12255	NM_028003	ENSMUSG00000022466	Rpap3	2310042P20Rik|D15Ertd682e	RNA polymerase II associated protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-17131606-4	chr16	17131484	17131684	+	934.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022324, intron 2 of 2)	CpG	799.0	NM_022324	64136.0	Mm.30222	NM_022324	ENSMUSG00000022769	Sdf2l1	-	stromal cell-derived factor 2-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-139116439-4	chr4	139116343	139116543	+	752.270813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163006, intron 1 of 3)	intron (NM_001163006, intron 1 of 3)	14594.0	NR_033745	433771.0	Mm.305990	NM_001163006	ENSMUSG00000050608	Minos1	2310028O11Rik	mitochondrial inner membrane organizing system 1	protein-coding	0.764201507985164	1.08221311808775	0.805854149757828	1.61986950183996	1.42225067339901	1.88141720438708	0.810156534160721	2.22746187607623	1.90469453355309	0.167531836794026	0.633485087165721
Merged-chr15-79691749-2	chr15	79691649	79691849	+	673.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013818, intron 1 of 11)	RSINE1|SINE|B4	853.0	NM_013818	14904.0	Mm.19080	NM_013818	ENSMUSG00000042535	Gtpbp1	AL022987|AW045683|C85212|GP-1|Gtpbp	GTP binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-119506435-2	chr1	119506335	119506535	+	616.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1653.0	NM_022327	64143.0	Mm.27832	NM_022327	ENSMUSG00000004451	Ralb	5730472O18Rik	v-ral simian leukemia viral oncogene B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-82976145-4	chr18	82976036	82976236	+	961.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183033, intron 2 of 5)	intron (NM_183033, intron 2 of 5)	-55576.0	NR_033307	75853.0	Mm.420737	NR_033307		4930592I03Rik	-	RIKEN cDNA 4930592I03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-36094191-2	chr8	36094094	36094294	+	926.0	f0_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172911)	promoter-TSS (NM_172911)	-634.0	NM_172911	244418.0	Mm.244971	NM_172911	ENSMUSG00000050271	Prag1	9830148H23|D8Ertd82e|NACK|Sgk223|mFLJ00269	PEAK1 related kinase activating pseudokinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-170220582-2	chr2	170220482	170220682	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-77907.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131291905-1	chr1	131291805	131292005	+	870.0	f1_balb.idr	intron (NM_001081011, intron 22 of 22)	intron (NM_001081011, intron 22 of 22)	-12342.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-47596702-2	chr12	47596580	47596780	+	628.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	-777905.0	NM_021361	664883.0	Mm.247195	NM_021361	ENSMUSG00000021047	Nova1	9430099M15Rik|G630039L02|Nova-1	neuro-oncological ventral antigen 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-90903718-4	chr5	90903599	90903799	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009140)	promoter-TSS (NM_009140)	-200.0	NM_009140	20310.0	Mm.4979	NM_009140	ENSMUSG00000058427	Cxcl2	CINC-2a|GROb|Gro2|MIP-2|MIP-2a|Mgsa-b|Mip2|Scyb|Scyb2	chemokine (C-X-C motif) ligand 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-88504654-4	chr10	88504545	88504745	+	882.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146690)	promoter-TSS (NM_001146690)	-675.0	NM_001146690	212862.0	Mm.288897	NM_144807	ENSMUSG00000060002	Chpt1	-	choline phosphotransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-134083048-4	chr1	134082973	134083173	+	842.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3918.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135428949-2	chr5	135428849	135429049	+	710.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146001, intron 20 of 30)	B3A|SINE|B2	-34403.0	NM_148932	107939.0	Mm.28399	NM_148932	ENSMUSG00000053293	Pom121	2610027A18Rik|C80273|mKIAA0618	nuclear pore membrane protein 121	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81132106-2	chr10	81132006	81132206	+	665.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur2|SINE|Alu	-4165.0	NM_010731	16969.0	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-24666438-3	chr6	24666320	24666520	+	835.233337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1425.0	NM_028459	73178.0	Mm.1574	NM_028459	ENSMUSG00000029684	Wasl	2900021I12Rik|3110031I02Rik|N-WASP	Wiskott-Aldrich syndrome-like (human)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-87074123-4	chr11	87074015	87074215	+	894.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025638)	promoter-TSS (NM_025638)	22.0	NM_025638	66569.0	Mm.281887	NM_025638	ENSMUSG00000061666	Gdpd1	2610020H15Rik	glycerophosphodiester phosphodiesterase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-96712226-4	chr15	96712100	96712300	+	986.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12472.0	NM_175121	67760.0	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-68798600-3	chr3	68798468	68798668	+	812.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR44C|LTR|ERVK	37073.0	NR_153374	102639225.0	Mm.109095	NR_153374	ENSMUSG00000102936	Gm35584	-	predicted gene, 35584	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-21200546-1	chr10	21200446	21200646	+	703.0	f0_balb.idr	Intergenic	Intergenic	13602.0	NR_152786	102636600.0	Mm.227606	NR_152786	ENSMUSG00000111005	Gm33619	-	predicted gene, 33619	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102377926-3	chr12	102377796	102377996	+	709.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177620, intron 7 of 9)	intron (NM_177620, intron 7 of 9)	61917.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-105904588-4	chr2	105904499	105904699	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028260)	promoter-TSS (NM_028260)	-35.0	NM_023876	77766.0	Mm.3608	NM_023876	ENSMUSG00000027167	Elp4	A330107A17Rik|Paxneb	elongator acetyltransferase complex subunit 4	protein-coding	6.0887134752577	6.80813656221421	6.21658442542795	6.29552401710424	6.42380086813613	6.6577136296377	6.36021330284244	6.54915439210187	0.138524009794745	0.522087419412881	0.947836760490745
Merged-chr12-82469758-2	chr12	82469638	82469838	+	555.0	f0_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-147187.0	NM_001310478	50779.0	Mm.126176	NM_015812	ENSMUSG00000021219	Rgs6	-	regulator of G-protein signaling 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75460591-4	chr11	75460471	75460671	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_030711)	promoter-TSS (NR_030711)	-968.0	NR_030711	100042498.0	Mm.482242	NR_030711	ENSMUSG00000085148	Mir22hg	2210403K04Rik|mir-22	Mir22 host gene (non-protein coding)	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27025246-2	chr2	27025146	27025346	+	866.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_172659, exon 4 of 10)	exon (NM_172659, exon 4 of 10)	2752.0	NM_172659	227659.0	Mm.41203	NM_172659	ENSMUSG00000036067	Slc2a6	A330096C23|F630103L12Rik|Glut6|Glut9	solute carrier family 2 (facilitated glucose transporter), member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-38441853-3	chr18	38441768	38441968	+	688.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355749, intron 1 of 7)	intron (NM_001355749, intron 1 of 7)	22961.0	NM_001355749	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-98924233-4	chr4	98924111	98924311	+	990.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_146144, exon 1 of 9)	5' UTR (NM_146144, exon 1 of 9)	401.0	NM_001356424	230484.0	Mm.371692	NM_146144	ENSMUSG00000028560	Usp1	-	ubiquitin specific peptidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-64603582-2	chr1	64603482	64603682	+	807.166626	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009952, exon 9 of 9)	3' UTR (NM_009952, exon 9 of 9)	13586.0	NM_025964	67099.0	Mm.46394	NM_025964	ENSMUSG00000025956	Mettl21a	2310038H17Rik|AI464204|Fam119a	methyltransferase like 21A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-135011575-4	chr6	135011474	135011674	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026360)	promoter-TSS (NM_026360)	-38.0	NM_026360	67755.0	Mm.166524	NM_026360	ENSMUSG00000030204	Ddx47	4930588A18Rik|C77285	DEAD (Asp-Glu-Ala-Asp) box polypeptide 47	protein-coding	7.08693415725106	7.6420897580182	7.03520625227513	6.40660616416415	7.25109384086456	7.44399265768905	6.91869442734921	6.96938131267992	0.0595190233916701	0.78955735295406	0.998431161219273
Merged-chr5-25100347-1	chr5	25100247	25100447	+	603.0	f0_balb.idr	promoter-TSS (NR_027851)	promoter-TSS (NR_027851)	295.0	NM_145401	108099.0	Mm.33649	NM_145401	ENSMUSG00000028944	Prkag2	2410051C13Rik|AAKG|AAKG2|AI854673|H91620p|WPWS	protein kinase, AMP-activated, gamma 2 non-catalytic subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-101909897-2	chr13	101909797	101909997	+	587.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1-int|LTR|ERVL-MaLR	-141680.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-99476849-4	chr5	99476727	99476927	+	906.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 2 of 3)	intron (NR_030692, intron 2 of 3)	-223900.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	2.14466986382311	3.15116969192592	2.79197026506767	2.50926109789087	2.01988365375038	2.68957403074414	2.33989454210275	2.90247482103409	-0.341615075081694	0.657836038299598	0.988704682801132
Merged-chr7-77511776-2	chr7	77511676	77511876	+	551.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	1066062.0	NM_008746	18213.0	Mm.33496	NM_008746	ENSMUSG00000059146	Ntrk3	AW125844|Ntrk3_tv3|TrkC	neurotrophic tyrosine kinase, receptor, type 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-161166399-1	chr1	161166299	161166499	+	791.666687	f0_balb.idr	intron (NM_028664, intron 6 of 6)	intron (NM_028664, intron 6 of 6)	-7085.0	NM_001195189	100502590.0	Mm.449990	NM_001195189	ENSMUSG00000049160	Tex50	4930469G21Rik	testis expressed 50	protein-coding	-0.503310342232146	-0.493316888630137	-0.496610311232859	-0.499138407161809	-0.0535552935868601	-0.492571913648176	-0.184919813754573	-0.211483789162342	3.35324672324621	0.191374428020048	1
Merged-chr5-137601158-4	chr5	137601060	137601260	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030037)	promoter-TSS (NM_030037)	-101.0	NM_030037	68929.0	Mm.41355	NM_030037	ENSMUSG00000037221	Mospd3	1190005J19Rik|5133401H10Rik|Gtig2|R124	motile sperm domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-73696986-2	chr12	73696886	73697086	+	621.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008856, intron 5 of 13)	intron (NM_008856, intron 5 of 13)	112190.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-109995837-2	chr11	109995737	109995937	+	919.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013851)	promoter-TSS (NM_013851)	-21.0	NM_013851	27404.0	Mm.341004	NM_013851	ENSMUSG00000020620	Abca8b	Abca8	ATP-binding cassette, sub-family A (ABC1), member 8b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-114651210-1	chr9	114651110	114651310	+	555.0	f0_c57.idr	Intergenic	Intergenic	-11010.0	NM_153585	78893.0	Mm.283708	NM_153585	ENSMUSG00000056167	Cnot10	2600001P13Rik	CCR4-NOT transcription complex, subunit 10	protein-coding	0.0655945927596385	-0.168041436248159	-0.00819149214980022	0.321011866454297	-0.179644984977291	-0.167119977865157	-0.171219226123186	0.225531418003996	-1.14133326443294	0.614461288668691	1
Merged-chr1-88255583-5	chr1	88255453	88255653	+	932.099976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001281466, exon 34 of 42)	exon (NM_001281466, exon 34 of 42)	13855.0	NR_040291	78605.0	Mm.384762	NR_040291		6430706D22Rik	-	RIKEN cDNA 6430706D22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-148065785-2	chr4	148065685	148065885	+	678.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22279.0	NM_009642	11610.0	Mm.46247	NM_009642	ENSMUSG00000029007	Agtrap	3300002E14Rik|AT1R|Atrap|D4Wsu124e	angiotensin II, type I receptor-associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83636777-2	chr11	83636677	83636877	+	929.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12601.0	NM_011337	20302.0	Mm.1282	NM_011337	ENSMUSG00000000982	Ccl3	AI323804|G0S19-1|LD78alpha|MIP-1alpha|MIP1-(a)|MIP1-alpha|Mip1a|Scya3	chemokine (C-C motif) ligand 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-5012856-2	chr7	5012756	5012956	+	825.214233	f1_balb.idr|f1_c57bl6.idr	exon (NM_011813, exon 2 of 3)	exon (NM_011813, exon 2 of 3)	386.0	NM_001110330	23877.0	Mm.38911	NM_011813	ENSMUSG00000061374	Fiz1	AI790204|mFLJ00416	Flt3 interacting zinc finger protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97574799-2	chr11	97574699	97574899	+	691.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_018873, intron 1 of 19)	intron (NM_018873, intron 1 of 19)	327.0	NM_018873	56013.0	Mm.342665	NM_018873	ENSMUSG00000038453	Srcin1	P140|SNIP|mKIAA1684|p140Cap	SRC kinase signaling inhibitor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-97356644-2	chr16	97356544	97356744	+	641.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019517)	promoter-TSS (NM_019517)	-84.0	NM_019517	56175.0	Mm.97885	NM_019517	ENSMUSG00000040605	Bace2	1110059C24Rik|AEPLC|AI850424|ALP56|ARP1|ASP1|ASP21|BAE2|CDA13|CEAP1|DRAP	beta-site APP-cleaving enzyme 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-30973875-4	chr5	30973771	30973971	+	953.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_053085, exon 3 of 3)	3' UTR (NM_053085, exon 3 of 3)	5194.0	NM_053085	69852.0	Mm.57874	NM_053085	ENSMUSG00000006642	Tcf23	2010002O16Rik|Out|bHLHa24	transcription factor 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-103341414-1	chr4	103341314	103341514	+	814.5	f0_balb.idr	intron (NM_025909, intron 7 of 8)	intron (NM_025909, intron 7 of 8)	27568.0	NM_025909	67013.0	Mm.30021	NM_025909	ENSMUSG00000035069	Oma1	2010001O09Rik|MPRP-1|ZMPOMA1	OMA1 zinc metallopeptidase	protein-coding	1.23837362968858	0.81391722450235	1.01893605889796	0.9932769166892	1.57161711292904	1.99531870628315	0.801645338333598	1.66645462724177	2.1605369610824	0.109472072943526	0.518601973352104
Merged-chr12-75713011-2	chr12	75712911	75713111	+	708.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	22718.0	NM_030750	81535.0	Mm.280199	NM_030750	ENSMUSG00000021054	Sgpp1	AI463453|SPP|SPP1|Spph1	sphingosine-1-phosphate phosphatase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-101031525-1	chr9	101031425	101031625	+	862.0	f1_c57bl6.idr	intron (NM_001311149, intron 2 of 13)	intron (NM_001311149, intron 2 of 13)	3359.0	NM_001311149	66904.0	Mm.335385	NM_025835	ENSMUSG00000032527	Pccb	1300012P06Rik|AI314687|R74805	propionyl Coenzyme A carboxylase, beta polypeptide	protein-coding	0.0212603763726574	-0.123290922593739	-0.129861558060679	0.971638977252435	0.291780719837535	-0.1218181615258	-0.128407078816964	-0.134077786108228	-2.00233788030793	0.375093167916916	1
Merged-chr12-55483394-5	chr12	55483280	55483480	+	904.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A0|LTR|ERVL-MaLR	9267.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55560007-4	chr14	55559915	55560115	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133734)	promoter-TSS (NM_133734)	-14.0	NR_037572	28199.0	Mm.11535	NM_133734	ENSMUSG00000022214	Dcaf11	0710008A13Rik|C76035|D14Ucla1|Dacf11|GLO14|Wdr23	DDB1 and CUL4 associated factor 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-35556270-4	chr8	35556172	35556372	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L4_C_Mam|LINE|RTE-X	-31526.0	NM_001081279	52065.0	Mm.103246	NM_001081279	ENSMUSG00000070056	Mfhas1	2310066G09Rik|D8Ertd91e	malignant fibrous histiocytoma amplified sequence 1	protein-coding	-0.184575194663816	-0.16583724912919	0.658808862781162	0.607674767623269	-0.183392338307067	-0.164470600476593	-0.170580471384934	-0.175829849734208	-4.01319879603011	0.0935370377364092	1
Merged-chr14-76081795-5	chr14	76081724	76081924	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR41|LTR|ERV1	28991.0	NM_026177	67467.0	Mm.260767	NM_026177	ENSMUSG00000022008	Gpalpp1	1200011I18Rik|Kiaa1704	GPALPP motifs containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-122946951-4	chr6	122946793	122946993	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	-5622.0	NM_001204241	73149.0	Mm.25684	NM_153197	ENSMUSG00000043832	Clec4a3	3110037K17Rik|Dcir3	C-type lectin domain family 4, member a3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-112628085-2	chr12	112627985	112628185	+	977.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_007421, intron 1 of 12)	intron (NM_007421, intron 1 of 12)	8038.0	NM_007421	11565.0	Mm.3440	NM_007421	ENSMUSG00000011148	Adssl1	AI528595|Adss|Adss1	adenylosuccinate synthetase like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-3345448-3	chr6	3345327	3345527	+	922.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54144.0	NM_010156	209086.0	Mm.196013	NM_010156	ENSMUSG00000047735	Samd9l	AA175286|ESTM25|mKIAA2005	sterile alpha motif domain containing 9-like	protein-coding	1.86509159159494	2.50967755201896	3.48114427563967	0.598056856866269	0.550776564071622	0.67504815572889	0.637683606002512	0.603616976946409	-6.01109403713107	0.0121210734001149	0.125010291107088
Merged-chr4-55655526-4	chr4	55655428	55655628	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-123053.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	-1.50561175621786	-1.47331375025452	-1.02203377115094	-1.49110398925286	-1.50334449591826	-1.47119716082604	-1.48086985756939	-1.48966786617048	-2.07776723614574	0.550394407909386	1
Merged-chr3-84675860-3	chr3	84675758	84675958	+	940.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177260, intron 1 of 6)	intron (NM_177260, intron 1 of 6)	9666.0	NM_177260	320782.0	Mm.107370	NM_177260	ENSMUSG00000056498	Tmem154	9930117H01Rik	transmembrane protein 154	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-87038033-3	chr6	87037918	87038118	+	880.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4828.0	NM_013528	14583.0	Mm.19893	NM_013528	ENSMUSG00000029992	Gfpt1	2810423A18Rik|AI324119|AI449986|GFA|GFAT|GFAT1|GFAT1m|Gfpt	glutamine fructose-6-phosphate transaminase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-87256450-3	chr17	87256352	87256552	+	970.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176808, intron 4 of 4)	intron (NM_176808, intron 4 of 4)	9495.0	NM_176808	193813.0	Mm.30251	NM_139295	ENSMUSG00000024150	Mcfd2	1810021C21Rik|F5f8d|Lman1ip|Sdnsf	multiple coagulation factor deficiency 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-129022780-2	chr5	129022680	129022880	+	631.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_009391, exon 7 of 7)	exon (NM_009391, exon 7 of 7)	2624.0	NM_009391	19384.0	Mm.297440	NM_009391	ENSMUSG00000029430	Ran	-	RAN, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-36863663-1	chr3	36863563	36863763	+	1000.0	f0_balb.idr	intron (NM_172679, intron 1 of 85)	intron (NM_172679, intron 1 of 85)	557.0	NM_172679	229227.0	Mm.207907	NM_172679	ENSMUSG00000037270	4932438A13Rik	4732443H21|B830039D19Rik|D630029K19Rik|FSA|Kiaa1109|Tweek	RIKEN cDNA 4932438A13 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-37224808-3	chr8	37224701	37224901	+	694.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-200563.0	NR_126063	414128.0	Mm.450976	NR_126063	ENSMUSG00000110242	G630064G18Rik	-	RIKEN cDNA G630064G18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-73637729-3	chr15	73637623	73637823	+	844.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12979.0	NM_001033219	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-13007350-2	chr10	13007250	13007450	+	564.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-1100.0	NM_175102	66125.0	Mm.29743	NM_175102	ENSMUSG00000078348	Sf3b5	10kDa|1110005L13Rik|AU043053|Sf3b10	splicing factor 3b, subunit 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-16687552-2	chr1	16687449	16687649	+	824.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016923)	promoter-TSS (NM_016923)	-907.0	NM_016923	17087.0	Mm.116844	NM_016923	ENSMUSG00000025779	Ly96	ESOP-1|MD-2|MD2	lymphocyte antigen 96	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-38339858-2	chr2	38339758	38339958	+	815.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290646, intron 1 of 4)	CpG	577.0	NM_001290646	16870.0	Mm.142856	NM_010710	ENSMUSG00000000247	Lhx2	LH2A|Lh-2|Lim2|ap|apterous	LIM homeobox protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-79527774-2	chr3	79527674	79527874	+	548.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162999, intron 1 of 16)	intron (NM_001162999, intron 1 of 16)	39905.0	NM_001162999	329679.0	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-119976790-5	chr4	119976741	119976941	+	964.56665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010657, intron 1 of 8)	(TC)n|Simple_repeat|Simple_repeat	162163.0	NM_010657	16656.0	Mm.302758	NM_010657	ENSMUSG00000028634	Hivep3	2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3	human immunodeficiency virus type I enhancer binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-35876320-2	chr18	35876220	35876420	+	761.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21633.0	NM_001357459	67393.0	Mm.94560	NM_133687	ENSMUSG00000046668	Cxxc5	4930415K17Rik	CXXC finger 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-74268883-2	chr18	74268783	74268983	+	645.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357422, intron 1 of 14)	intron (NM_001357422, intron 1 of 14)	708.0	NM_001357422	17190.0	Mm.22522	NM_013594	ENSMUSG00000024561	Mbd1	Cxxc3|PCM1	methyl-CpG binding domain protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-6376126-4	chr4	6376023	6376223	+	924.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001098227, intron 1 of 8)	intron (NM_001098227, intron 1 of 8)	10443.0	NM_001098227	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-38214773-3	chr7	38214671	38214871	+	811.399963	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GC_rich|Low_complexity|Low_complexity	13223.0	NM_024413	72287.0	Mm.333798	NM_024413	ENSMUSG00000074170	Plekhf1	1810013P09Rik|APPD|LAPF|PHAFIN1|ZFYVE15	pleckstrin homology domain containing, family F (with FYVE domain) member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-37504724-3	chr10	37504613	37504813	+	763.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-365787.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-102399023-3	chr15	102398931	102399131	+	561.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-7285.0	NM_013672	20683.0	Mm.4618	NM_013672	ENSMUSG00000001280	Sp1	1110003E12Rik|AA450830|AI845540|Sp1-1	trans-acting transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19157550-3	chr7	19157503	19157703	+	889.166626	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080815, intron 13 of 13)	CpG	7765.0	NM_026943	107686.0	Mm.29135	NM_026943	ENSMUSG00000040824	Snrpd2	1810009A06Rik|SMD2	small nuclear ribonucleoprotein D2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-173737498-4	chr2	173737418	173737618	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019806)	promoter-TSS (NM_019806)	-53.0	NM_019806	56491.0	Mm.260456	NM_019806	ENSMUSG00000054455	Vapb	AI225786|AI840687|AI848259|D2Abb2e|R75548|VAP33b|Vamp33b	vesicle-associated membrane protein, associated protein B and C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-189973182-2	chr1	189973046	189973246	+	747.125	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-50855.0	NM_026796	226830.0	Mm.156895	NM_026796	ENSMUSG00000026603	Smyd2	1110020E07Rik|4930402C15|KMT3C|Zmynd14	SET and MYND domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-65356301-1	chr3	65356201	65356401	+	762.0	f1_balb.idr	exon (NM_001289450, exon 10 of 15)	exon (NM_001289450, exon 10 of 15)	-6872.0	NR_040390	319798.0	Mm.445698	NR_040390		A730090N16Rik	-	RIKEN cDNA A730090N16 gene	ncRNA	-1.21575676353841	-1.1882771616738	-1.1995328574972	-1.2087786211754	-1.21524488394202	-1.18583800543462	-1.19698481468061	-0.540595393272118	2.74438217975722	0.425994238664144	1
Merged-chr7-19676896-4	chr7	19676804	19677004	+	930.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001277944, intron 1 of 4)	intron (NM_001277944, intron 1 of 4)	1037.0	NM_001277944	11813.0	Mm.28394	NM_001277944	ENSMUSG00000002992	Apoc2	apo-CII|apoC-II	apolipoprotein C-II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115531491-2	chr5	115531338	115531538	+	898.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_011223, intron 1 of 10)	intron (NM_011223, intron 1 of 10)	24762.0	NM_133915	19303.0	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-54648768-4	chr11	54648672	54648872	+	907.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252494, intron 16 of 28)	intron (NM_001252494, intron 16 of 28)	52626.0	NM_001252497	192786.0	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16844413-2	chr7	16844313	16844513	+	638.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178900, intron 1 of 17)	intron (NM_178900, intron 1 of 17)	1348.0	NM_178900	101540.0	Mm.1881	NM_178900	ENSMUSG00000041187	Prkd2	AI325941|PKD2	protein kinase D2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-122545507-3	chr6	122545413	122545613	+	681.711121	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8296.0	NM_009645	11628.0	Mm.391503	NM_009645	ENSMUSG00000040627	Aicda	Aid|Arp2	activation-induced cytidine deaminase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134124571-2	chr6	134124471	134124671	+	624.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 2 of 8)	RMER15|LTR|ERVL	88871.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69395770-2	chr11	69395668	69395868	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_030083)	promoter-TSS (NM_030083)	-23.0	NM_030083	78304.0	Mm.45683	NM_030083	ENSMUSG00000059278	Naa38	1500034E06Rik|Lsmd1	N(alpha)-acetyltransferase 38, NatC auxiliary subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-42896699-3	chr9	42896620	42896820	+	751.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175481, intron 1 of 20)	intron (NM_175481, intron 1 of 20)	47651.0	NM_175481	110637.0	Mm.370291	NM_175481	ENSMUSG00000032017	Grik4	6330551K01Rik|GluK4|GluRgamma1|KA-1|KA1	glutamate receptor, ionotropic, kainate 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-61343321-2	chr10	61343221	61343421	+	874.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013753, intron 12 of 19)	intron (NM_013753, intron 12 of 19)	40202.0	NM_013753	27355.0	Mm.269699	NM_013753	ENSMUSG00000020092	Pald1	MMPAL|Pald|mKIAA1274	phosphatase domain containing, paladin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-120708340-1	chr9	120708240	120708440	+	580.0	f0_balb.idr	Intergenic	Intergenic	131009.0	NR_073359	76100.0	Mm.48212	NR_073359	ENSMUSG00000052658	5830454E08Rik	-	RIKEN cDNA 5830454E08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-166268509-2	chr1	166268409	166268609	+	892.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357432, intron 1 of 8)	intron (NM_001357432, intron 1 of 8)	14370.0	NM_001357428	100039795.0	Mm.101743	NM_001164528	ENSMUSG00000040612	Ildr2	2810478N18Rik|3110063L10Rik|AI852300|D1Ertd471e|Dbsm1|Ll	immunoglobulin-like domain containing receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127067863-2	chr10	127067763	127067963	+	779.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_009870)	TTS (NM_009870)	2398.0	NM_025982	67125.0	Mm.35650	NM_025982	ENSMUSG00000006736	Tspan31	2700085A14Rik|AW742554|Sas	tetraspanin 31	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-152729752-5	chr2	152729645	152729845	+	841.099976	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6506.0	NM_010495	15901.0	Mm.444	NM_010495	ENSMUSG00000042745	Id1	AI323524|D2Wsu140e|Idb1|bHLHb24	inhibitor of DNA binding 1	protein-coding	3.5150203123224	4.13382965989847	4.73794066584433	4.24733146056045	2.84828001609622	2.78949716262679	3.11364619148361	3.12385503059409	-1.84645892203458	0.000598620325591398	0.0129643441632592
Merged-chr7-24461665-4	chr7	24461587	24461787	+	916.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011113)	promoter-TSS (NM_011113)	-796.0	NM_011113	18793.0	Mm.1359	NM_011113	ENSMUSG00000046223	Plaur	Cd87|u-PAR|uPAR	plasminogen activator, urokinase receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191611881-2	chr1	191611766	191611966	+	775.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_001306203, exon 12 of 19)	exon (NM_001306203, exon 12 of 19)	36230.0	NM_001306204	77065.0	Mm.338175	NM_178632	ENSMUSG00000037461	Ints7	5930412E23Rik|int7	integrator complex subunit 7	protein-coding	0.872801305374503	1.17705844157635	0.715050081098742	0.702317488106336	1.83304189507394	1.50390195282528	1.86456948568641	0.704561586051711	2.83673360268535	0.0562512685066785	0.349811361200654
Merged-chr6-72164511-4	chr6	72164368	72164568	+	963.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41271.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80151304-4	chr10	80151208	80151408	+	948.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347117, intron 2 of 7)	CT-rich|Low_complexity|Low_complexity	1626.0	NM_001305799	59090.0	Mm.143813	NM_021565	ENSMUSG00000035621	Midn	3000003C15Rik	midnolin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-114647805-3	chr5	114647707	114647907	+	912.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022017, intron 1 of 15)	intron (NM_022017, intron 1 of 15)	10614.0	NM_022017	63873.0	Mm.266450	NM_022017	ENSMUSG00000014158	Trpv4	0610033B08Rik|OTRPC4|Trp12|VR-OAC|VRL-2|VROAC	transient receptor potential cation channel, subfamily V, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-40854134-4	chr4	40854030	40854230	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_022305, exon 1 of 6)	5' UTR (NM_022305, exon 1 of 6)	407.0	NM_022305	14595.0	Mm.15622	NM_022305	ENSMUSG00000028413	B4galt1	B-1,4-GalT|B-1,4-GalT1|GalT|Ggtb|Ggtb2|b4Gal-T1|beta-1,4-GalT|beta-1,4-GalT1|beta4Gal-T1	UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35980791-3	chr17	35980660	35980860	+	966.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001282013)	promoter-TSS (NM_001282013)	805.0	NM_008136	14670.0	Mm.335754	NM_008136	ENSMUSG00000024429	Gnl1	Gna-rs1|Gnal1	guanine nucleotide binding protein-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-119707998-3	chr4	119707889	119708089	+	878.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49044.0	NM_008191	14916.0	Mm.278	NM_008191	ENSMUSG00000032978	Guca2b	AV066530|Gcap2|Ugn	guanylate cyclase activator 2b (retina)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-118970776-4	chr10	118970647	118970847	+	861.2291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43604.0	NR_110482	216377.0	Mm.208936	NR_110482	ENSMUSG00000112854	Gm38403	C230029M16	predicted gene, 38403	ncRNA	2.03861259158655	1.56604502675483	2.12963812990928	1.97380747108636	1.68253202125014	1.38090796340047	1.1218379521907	1.7657656602963	-1.3511271748168	0.212860371834972	0.702521201524664
Merged-chr2-36244902-4	chr2	36244800	36245000	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008969, intron 8 of 10)	intron (NM_008969, intron 8 of 10)	14474.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95231329-2	chr3	95231229	95231429	+	971.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038708, intron 1 of 4)	intron (NM_001038708, intron 1 of 4)	2386.0	NM_001038708	57912.0	Mm.28189	NM_172395	ENSMUSG00000046722	Cdc42se1	1300002M12Rik|AW558204|Cdcse1|SCIP1|Spec1	CDC42 small effector 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-73937210-4	chr17	73937099	73937299	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011723, intron 4 of 35)	intron (NM_011723, intron 4 of 35)	12997.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80424818-1	chr7	80424718	80424918	+	541.0	f1_c57bl6.idr	Intergenic	B3|SINE|B2	-19382.0	NM_001081454	18550.0	Mm.5241	NM_011046	ENSMUSG00000030530	Furin	9130404I01Rik|Fur|PACE|Pcsk3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding	0.716067152393546	1.999802855328	0.54355657111082	0.763438028469138	0.899044560238264	0.564173992871523	0.547327999084292	1.85198003275415	-0.232132161451114	0.880151519484688	0.998431161219273
Merged-chr9-44732576-2	chr9	44732476	44732676	+	584.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153537, intron 1 of 21)	intron (NM_153537, intron 1 of 21)	2622.0	NM_153537	102693.0	Mm.28639	NM_153537	ENSMUSG00000048537	Phldb1	AU041016|D330037A14Rik|Ll5a	pleckstrin homology like domain, family B, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117799412-4	chr11	117799314	117799514	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029964, intron 2 of 5)	intron (NM_029964, intron 2 of 5)	1754.0	NM_029964	77727.0	Mm.159981	NM_029964	ENSMUSG00000025573	6030468B19Rik	Il-40	RIKEN cDNA 6030468B19 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-86272907-4	chr15	86272799	86272999	+	981.408325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145476, intron 4 of 12)	L1M4c|LINE|L1	-4776.0	NM_001358062	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134121628-2	chr6	134121649	134121849	+	758.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 2 of 8)	intron (NM_001303102, intron 2 of 8)	86049.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	-1.70147049771789	-1.81273664167395	-1.82168966216065	-1.68817205465363	-1.84026411453382	-1.81079648478606	-1.81966289456708	-1.8277275275835	-1.35489344311002	0.70088362784012	1
Merged-chr2-80022505-2	chr2	80022405	80022605	+	905.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355141, intron 2 of 15)	intron (NM_001355141, intron 2 of 15)	16397.0	NM_001355142	18573.0	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-151215033-2	chr1	151214933	151215133	+	860.125	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	76999.0	NR_038011	402734.0	Mm.337666	NR_038011		C730036E19Rik	lncLSTR	RIKEN cDNA C730036E19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167680160-4	chr2	167680071	167680271	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8744.0	NM_009883	12608.0	Mm.439656	NM_009883	ENSMUSG00000056501	Cebpb	C/EBPbeta|CRP2|IL-6DBP|LAP|LIP|NF-IL6|NF-M|Nfil6	CCAAT/enhancer binding protein (C/EBP), beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53040859-2	chr4	53040759	53040959	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 43 of 49)	intron (NM_013454, intron 43 of 49)	28979.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134743856-4	chr6	134743757	134743957	+	940.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130447, intron 3 of 6)	intron (NM_130447, intron 3 of 6)	-48503.0	NR_151454	105242798.0	Mm.398227	NR_151454		1700055D16Rik	-	RIKEN cDNA 1700055D16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16043658-4	chr7	16043549	16043749	+	970.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28196.0	NM_001347559	666528.0	Mm.290718	NM_001099277	ENSMUSG00000078796	Zfp541	EG666528|Znf541	zinc finger protein 541	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-71367733-4	chr2	71367627	71367827	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172436)	promoter-TSS (NM_172436)	-173.0	NM_172436	78830.0	Mm.30928	NM_172436	ENSMUSG00000027010	Slc25a12	2610002D09Rik|AI839531|B230107K20Rik|BB129864	solute carrier family 25 (mitochondrial carrier, Aralar), member 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-41038689-4	chr3	41038568	41038768	+	970.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44378.0	NM_027558	70804.0	Mm.40321	NM_027558	ENSMUSG00000049940	Pgrmc2	4631434O19Rik|5730409G06Rik|DG6|PMBP	progesterone receptor membrane component 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-40460003-4	chr12	40459904	40460104	+	930.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	13951.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-68104763-3	chr10	68104653	68104853	+	897.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023598, intron 8 of 9)	intron (NM_023598, intron 8 of 9)	125183.0	NM_001359319	170799.0	Mm.209844	NM_133244	ENSMUSG00000037846	Rtkn2	B130039D23Rik|Mbf|Plekhk1	rhotekin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-141058159-1	chr5	141058059	141058259	+	619.0	f0_balb.idr	Intergenic	Intergenic	-57563.0	NM_175362	108723.0	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89089990-4	chr3	89089897	89090097	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001083808)	promoter-TSS (NM_001083808)	34.0	NM_001083808	72296.0	Mm.27687	NM_028188	ENSMUSG00000041263	Rusc1	2210403N08Rik|AA408288|NESCA	RUN and SH3 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-48671956-2	chr16	48671856	48672056	+	664.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	100000.0	NM_198297	77647.0	Mm.167298	NM_198297	ENSMUSG00000030775	Trat1	C030046M14Rik|Tcrim|Trim	T cell receptor associated transmembrane adaptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-82902877-1	chr10	82902777	82902977	+	595.0	f1_c57bl6.idr	Intergenic	B4|SINE|B4	36251.0	NM_025499	66341.0	Mm.443284	NM_025499	ENSMUSG00000109864	Eid3	1700027M21Rik|NS4EB	EP300 interacting inhibitor of differentiation 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-55205255-4	chr13	55205155	55205355	+	951.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-4527.0	NM_008739	18193.0	Mm.168965	NM_008739	ENSMUSG00000021488	Nsd1	AI528500|KMT3B	nuclear receptor-binding SET-domain protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96239133-4	chr3	96239020	96239220	+	927.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178216)	promoter-TSS (NM_178216)	7.0	NM_054045	97114.0	Mm.358797	NM_054045	ENSMUSG00000081058	Hist2h3c2	H3-614|H3.2-614|Hist2h3c2-ps|Hist2h3ca1|M32461	histone cluster 2, H3c2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-36580794-2	chr5	36580624	36580824	+	739.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113362, intron 2 of 14)	intron (NM_001113362, intron 2 of 14)	1673.0	NM_133910	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-49192619-7	chr13	49192524	49192724	+	878.857117	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013610, intron 1 of 3)	intron (NM_013610, intron 1 of 3)	5077.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132493255-2	chr4	132493155	132493355	+	782.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_144907, exon 10 of 10)	3' UTR (NM_144907, exon 10 of 10)	17201.0	NM_144907	230784.0	Mm.23608	NM_144907	ENSMUSG00000028893	Sesn2	HI95|SEST2|Ses2	sestrin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-102354762-2	chr9	102354662	102354862	+	710.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001168296)	promoter-TSS (NM_001168296)	-69.0	NM_001168296	270190.0	Mm.22897	NM_173447	ENSMUSG00000032537	Ephb1	9330129L11|AW488255|C130099E04Rik|Cek6|Elk|Elkh|Hek6|Net	Eph receptor B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96576381-4	chr3	96576280	96576480	+	946.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9579.0	NR_040409	100038464.0	Mm.475126	NR_040409	ENSMUSG00000074398	Gm15441	-	predicted gene 15441	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-120362877-4	chr2	120362763	120362963	+	925.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173734, intron 17 of 19)	intron (NM_173734, intron 17 of 19)	-9726.0	NM_147153	269338.0	Mm.246131	NM_147153	ENSMUSG00000027291	Vps39	A230065P22Rik|AW743070|Vam6|Vam6P|mVam6	VPS39 HOPS complex subunit	protein-coding	1.84116773094472	1.09913261172044	1.07927533583655	2.12497258865031	1.53000191598102	1.85434223342525	1.91208153925546	1.85092405152906	0.470957846798315	0.684948868929329	0.996533206832645
Merged-chr15-78843680-3	chr15	78843589	78843789	+	849.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027219, intron 1 of 2)	intron (NM_027219, intron 1 of 2)	1042.0	NM_027219	104445.0	Mm.307488	NM_027219	ENSMUSG00000049521	Cdc42ep1	1810058K22Rik|AA980734|Borg5|CEP1|MSE55	CDC42 effector protein (Rho GTPase binding) 1	protein-coding	1.39804711311212	1.35041910309587	1.30168359818008	1.48270982891526	0.784862825963559	1.21132290838133	1.31253596297018	0.799652525651633	-1.50182539005114	0.271894950420451	0.775341509331591
Merged-chr5-134679063-2	chr5	134678963	134679163	+	753.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001305875)	promoter-TSS (NM_001305875)	-815.0	NR_131247	16885.0	Mm.15409	NM_010717	ENSMUSG00000029674	Limk1	KIZ-1|LIMK-1|Limk	LIM-domain containing, protein kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107985869-4	chr9	107985789	107985989	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026597)	promoter-TSS (NM_026597)	27.0	NM_026597	68176.0	Mm.76166	NM_026597	ENSMUSG00000042106	Fam212a	6230427J02Rik|Inka1	family with sequence similarity 212, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-120166030-4	chr10	120165931	120166131	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359184, intron 7 of 11)	intron (NM_001359184, intron 7 of 11)	35566.0	NM_028679	73914.0	Mm.146194	NM_028679	ENSMUSG00000020227	Irak3	4833428C18Rik|AI563835|IRAK-M	interleukin-1 receptor-associated kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-68738428-2	chr10	68738328	68738528	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177794, intron 1 of 5)	MTE2a|LTR|ERVL-MaLR	14682.0	NM_177794	327766.0	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-117493834-2	chr5	117493734	117493934	+	632.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001312914, intron 1 of 19)	intron (NM_001312914, intron 1 of 19)	79832.0	NM_001312914	333050.0	Mm.437947	NM_001034873	ENSMUSG00000061578	Ksr2	-	kinase suppressor of ras 2	protein-coding	-1.53362919331644	-1.50201671710775	-1.51157659084044	-1.08120497225282	-1.53141005593807	-1.49994505258991	-1.50941244497383	-1.51802371459528	-1.94474658522739	0.577200604274218	1
Merged-chr2-68438095-4	chr2	68438015	68438215	+	992.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016866, intron 1 of 17)	Lx8b|LINE|L1	33866.0	NM_016866	53416.0	Mm.198414	NM_016866	ENSMUSG00000027030	Stk39	AW227544|AW556857|DCHT|RF005|Rnl5|SPAK	serine/threonine kinase 39	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-152344134-6	chr2	152344025	152344225	+	958.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175093)	promoter-TSS (NM_175093)	-65.0	NM_175093	228775.0	Mm.276018	NM_144554	ENSMUSG00000032715	Trib3	Ifld2|Nipk|SINK|SKIP3|TRB-3|Trb3	tribbles pseudokinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-66878325-3	chr9	66878196	66878396	+	805.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173413, intron 1 of 7)	B2_Mm1t|SINE|B2	41409.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-3448143-2	chr17	3448043	3448243	+	680.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011878, intron 9 of 26)	intron (NM_011878, intron 9 of 26)	-34172.0	NM_001286758	24001.0	Mm.137134	NM_011878	ENSMUSG00000023800	Tiam2	3000002F19Rik|STEF|mKIAA2016	T cell lymphoma invasion and metastasis 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89831883-2	chr3	89831783	89831983	+	652.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_172530, exon 1 of 6)	exon (NM_172530, exon 1 of 6)	513.0	NM_172530	214547.0	Mm.225	NM_172530	ENSMUSG00000046280	She	9430022A14	src homology 2 domain-containing transforming protein E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-56925618-4	chr18	56925533	56925733	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177115)	promoter-TSS (NM_177115)	-85.0	NM_177115	320253.0	Mm.312623	NM_177115	ENSMUSG00000032656	March3	6330411I15Rik|A530081L18Rik|AI843639|MARCH-III	membrane-associated ring finger (C3HC4) 3	protein-coding	0.124544651402854	0.184958882853529	1.54222799581072	0.151046414446658	0.12860484089267	0.189072643061198	2.16091013195324	0.153732315342421	1.04330410954612	0.750618206676633	0.998431161219273
Merged-chr5-105716629-2	chr5	105716529	105716729	+	712.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178701, intron 1 of 2)	intron (NM_178701, intron 1 of 2)	15819.0	NM_178701	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21529528-2	chr9	21529428	21529628	+	561.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_206536, intron 2 of 5)	intron (NM_206536, intron 2 of 5)	3351.0	NM_206536	382062.0	Mm.325205	NM_206536	ENSMUSG00000057191	AB124611	Gm1706	cDNA sequence AB124611	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-99380285-3	chr10	99380182	99380382	+	701.044434	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	117051.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-125776995-4	chr8	125776927	125777127	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175561, intron 25 of 33)	intron (NM_175561, intron 25 of 33)	42824.0	NM_001310688	66566.0	Mm.25296	NM_025636	ENSMUSG00000031851	Ntpcr	2310079N02Rik|AI449709	nucleoside-triphosphatase, cancer-related	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-67573706-2	chr3	67573606	67573806	+	660.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	-9062.0	NM_025813	66868.0	Mm.491153	NM_025813	ENSMUSG00000027775	Mfsd1	1200003O06Rik	major facilitator superfamily domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-53627143-4	chr8	53627011	53627211	+	803.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146208, intron 1 of 9)	RLTR25B|LTR|ERVK	11954.0	NM_146208	234258.0	Mm.281749	NM_146208	ENSMUSG00000039396	Neil3	AI449477|BC034753|C85903	nei like 3 (E. coli)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-120677936-2	chr7	120677836	120678036	+	783.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164580, intron 1 of 2)	intron (NM_001164580, intron 1 of 2)	316.0	NM_001164580	233812.0	Mm.276479	NM_001164580	ENSMUSG00000046096	Mosmo	Atthog	modulator of smoothened	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-70310917-2	chr16	70310817	70311017	+	612.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15-int|LTR|ERVL	-3032.0	NM_028803	74185.0	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-67955340-2	chr7	67955240	67955440	+	569.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010513, intron 1 of 20)	intron (NM_010513, intron 1 of 20)	3083.0	NM_010513	16001.0	Mm.275742	NM_010513	ENSMUSG00000005533	Igf1r	A330103N21Rik|CD221|D930020L01|IGF-1R|hyft	insulin-like growth factor I receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89867086-2	chr3	89866986	89867186	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35716.0	NM_172530	214547.0	Mm.225	NM_172530	ENSMUSG00000046280	She	9430022A14	src homology 2 domain-containing transforming protein E	protein-coding	-0.499940950918087	-0.487518524828365	0.0891561271406926	-0.494726023626598	-0.499164980458282	-0.486601867615524	0.100277611126392	-0.494177430718284	0.0410194320726077	0.98816738256539	1
Merged-chr16-4790137-4	chr16	4790028	4790228	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358080)	promoter-TSS (NM_001358080)	164.0	NM_001358082	66626.0	Mm.157648	NM_025670	ENSMUSG00000004071	Cdip1	2700048O17Rik|5730403B10Rik|AU018521|AW742692|CDIP	cell death inducing Trp53 target 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-31059789-2	chr17	31059689	31059889	+	786.799988	f1_balb.idr|f1_c57bl6.idr	intron (NM_009593, intron 1 of 14)	intron (NM_009593, intron 1 of 14)	2095.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-79926482-4	chr10	79926331	79926531	+	799.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007880)	promoter-TSS (NM_007880)	-612.0	NM_001288626	13496.0	Mm.301282	NM_007880	ENSMUSG00000019564	Arid3a	Bright|Dri1|Dril1	AT rich interactive domain 3A (BRIGHT-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-94601805-4	chr16	94601688	94601888	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113389, intron 1 of 11)	intron (NM_001113389, intron 1 of 11)	-9631.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-99045584-2	chr14	99045484	99045684	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175265)	promoter-TSS (NM_175265)	552.0	NM_175245	76789.0	Mm.38912	NM_175245	ENSMUSG00000033186	Mzt1	2410129H14Rik|AI120158|Mozart1	mitotic spindle organizing protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-100125137-2	chr15	100125037	100125237	+	576.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159361, intron 2 of 37)	intron (NM_001159361, intron 2 of 37)	-29259.0	NM_172819	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16804871-2	chr7	16804771	16804971	+	831.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11018.0	NM_133789	97387.0	Mm.21612	NM_133789	ENSMUSG00000030374	Strn4	C80611|ZIN|zinedin	striatin, calmodulin binding protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-24281191-3	chr13	24281066	24281266	+	793.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311122)	promoter-TSS (NM_001311122)	-376.0	NM_026825	68732.0	Mm.211047	NM_026825	ENSMUSG00000021338	Carmil1	1110037D04Rik|AI425970|CARMIL|CARML1|D130057M20|Lrrc16|Lrrc16a	capping protein regulator and myosin 1 linker 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-92903044-3	chr1	92902890	92903090	+	696.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172850)	promoter-TSS (NM_172850)	-84.0	NM_001347091	241158.0	Mm.108280	NM_172850	ENSMUSG00000034212	Ankmy1	4930483I10Rik|ZMYND13	ankyrin repeat and MYND domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98700192-4	chr11	98700120	98700320	+	844.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1093.0	NM_009971	12985.0	Mm.1238	NM_009971	ENSMUSG00000038067	Csf3	Csfg|G-CSF|MGI-IG	colony stimulating factor 3 (granulocyte)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-4173144-2	chr8	4173026	4173226	+	672.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346730, intron 1 of 19)	MTD|LTR|ERVL-MaLR	6559.0	NM_001346730	213027.0	Mm.437106	NM_153536	ENSMUSG00000011832	Evi5l	1700084G18Rik|2310039H16Rik|3110007G05Rik|B130050I23Rik	ecotropic viral integration site 5 like	protein-coding	-2.18138529563533	-2.15523716995652	-2.1631445789866	-2.16963996020037	-2.05513010215571	-2.15352360143315	-2.16135451490766	-2.16847729006863	0.759018020146679	0.829933115115583	1
Merged-chr13-17978562-2	chr13	17978462	17978662	+	595.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	14789.0	NM_025904	67008.0	Mm.252918	NM_025904	ENSMUSG00000075054	Yae1d1	1600012F09Rik	Yae1 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-113697042-4	chr6	113696933	113697133	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033463)	promoter-TSS (NM_001033463)	-17.0	NM_001347356	381801.0	Mm.333322	NM_001033463	ENSMUSG00000056952	Tatdn2	AI646012|mKIAA0218	TatD DNase domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-79975291-4	chr10	79975183	79975383	+	944.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130455, intron 3 of 8)	intron (NM_130455, intron 3 of 8)	4559.0	NM_130455	170483.0	Mm.391566	NM_130455	ENSMUSG00000035745	Grin3b	GluN3B|NR3B	glutamate receptor, ionotropic, NMDA3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-74348548-5	chr5	74348461	74348661	+	913.2666630000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114660, intron 5 of 8)	intron (NM_001114660, intron 5 of 8)	153235.0	NM_026878	68939.0	Mm.293316	NM_026878	ENSMUSG00000049907	Rasl11b	1190017B18Rik	RAS-like, family 11, member B	protein-coding	2.66277423203076	1.89713118289199	1.82670141597787	1.01687723290287	2.10389425917832	2.17590368721064	1.04415065337616	1.02065390041702	-0.705809189314719	0.567405763795825	0.962562732139494
Merged-chr4-106981606-4	chr4	106981503	106981703	+	750.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355532, intron 1 of 14)	intron (NM_001355532, intron 1 of 14)	58418.0	NM_001355532	72475.0	Mm.195635	NM_023672	ENSMUSG00000061887	Ssbp3	2610021L12Rik|2610200M23Rik|5730488C10Rik|AI854733|AW551939|LAST|SSDP1	single-stranded DNA binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-95772493-4	chr15	95772393	95772593	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-18350.0	NM_175344	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-114020853-4	chr7	114020750	114020950	+	922.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145584, intron 7 of 15)	intron (NM_145584, intron 7 of 15)	96931.0	NM_025846	66922.0	Mm.276572	NM_025846	ENSMUSG00000055723	Rras2	2610016H24Rik|C86394|TC21	related RAS viral (r-ras) oncogene 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-6062451-4	chr13	6062379	6062579	+	912.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	200990.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-9499613-3	chr3	9499512	9499712	+	814.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133218, intron 2 of 8)	L1MC5a|LINE|L1	96534.0	NR_015499	320088.0	Mm.212908	NR_015499	ENSMUSG00000097365	C030034L19Rik	A130044O20Rik	RIKEN cDNA C030034L19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-110653469-4	chr5	110653367	110653567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027156)	promoter-TSS (NM_027156)	16.0	NM_027156	69663.0	Mm.5267	NM_027156	ENSMUSG00000029504	Ddx51	2310061O04Rik|AA537002|C81583|R75505	DEAD (Asp-Glu-Ala-Asp) box polypeptide 51	protein-coding	4.92996455275004	3.83636626873697	4.15407758538298	4.41935796303105	4.88296078009173	3.86523896821039	4.18553458801827	4.39245320020428	-0.0174900037533576	0.967975617534077	0.998431161219273
Merged-chr5-96912976-4	chr5	96912870	96913070	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8302.0	NR_131152	666266.0	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	5.04792884071143	4.82343214824456	3.49666254995739	5.10010541205711	5.74005962241179	5.60499460949378	4.80027457920543	5.85691371522888	0.942247245890954	0.0130222618693436	0.131250035706148
Merged-chr12-76404188-4	chr12	76404109	76404309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008301)	promoter-TSS (NM_008301)	33.0	NM_001002012	15512.0	Mm.296181	NM_008301	ENSMUSG00000059970	Hspa2	70kDa|HSP70.2|HSP70A2|Hsp70-2	heat shock protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-105416288-6	chr5	105416189	105416389	+	938.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033550, intron 1 of 4)	CpG	514.0	NM_001033550	433926.0	Mm.439781	NM_001033550	ENSMUSG00000070639	Lrrc8b	2210408K08Rik|R75581|Ta-lrrp|mKIAA0231	leucine rich repeat containing 8 family, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-83593319-2	chr12	83593219	83593419	+	672.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359167, intron 3 of 12)	B3A|SINE|B2	3903.0	NM_001359167	217695.0	Mm.59257	NM_183154	ENSMUSG00000042628	Zfyve1	DFCP1|G630053K23|TAFF1|ZNFN2A1|mKIAA1589	zinc finger, FYVE domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-38145809-3	chr6	38145719	38145919	+	828.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194061, intron 15 of 19)	(TG)n|Simple_repeat|Simple_repeat	-21233.0	NM_080467	140494.0	Mm.462308	NM_080467	ENSMUSG00000038600	Atp6v0a4	Atp6n1b|a4	ATPase, H+ transporting, lysosomal V0 subunit A4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81074700-4	chr15	81074591	81074791	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001082536, intron 2 of 13)	intron (NM_001082536, intron 2 of 13)	30356.0	NM_153049	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4880604-4	chr16	4880500	4880700	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145359)	promoter-TSS (NM_145359)	-749.0	NM_145359	207740.0	Mm.268895	NM_145359	ENSMUSG00000039568	Ubald1	1500031H01Rik|BC013706|Fam100a	UBA-like domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-79037811-3	chr8	79037708	79037908	+	740.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001294279, intron 1 of 14)	intron (NM_001294279, intron 1 of 14)	9371.0	NM_178267	622675.0	Mm.48724	NM_178267	ENSMUSG00000071064	Zfp827	2810449M09Rik|D630040G17Rik|Znf827	zinc finger protein 827	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-8190072-2	chr17	8189972	8190172	+	971.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_201230, intron 9 of 11)	intron (NM_201230, intron 9 of 11)	24554.0	NM_201230	75296.0	Mm.227250	NM_201230	ENSMUSG00000069135	Fgfr1op	4930553O10Rik|FOP	Fgfr1 oncogene partner	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16256689-2	chr7	16256589	16256789	+	885.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001173550, intron 1 of 1)	intron (NM_001173550, intron 1 of 1)	2649.0	NM_001173550	12273.0	Mm.247623	NM_007577	ENSMUSG00000049130	C5ar1	C5aR|C5r1|Cd88|D7Msu1	complement component 5a receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-81704907-4	chr17	81704799	81704999	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 1 of 8)	intron (NR_104580, intron 1 of 8)	33488.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-89646425-2	chr1	89646325	89646525	+	631.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037136, intron 6 of 16)	MIR|SINE|MIR	37467.0	NR_015540	74403.0	Mm.444291	NR_015540		4933400F21Rik	1700091C04Rik|4930565K10Rik	RIKEN cDNA 4933400F21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-77852831-1	chr14	77852731	77852931	+	552.0	f1_c57bl6.idr	intron (NM_025384, intron 3 of 5)	intron (NM_025384, intron 3 of 5)	22086.0	NM_025384	66148.0	Mm.248046	NM_025384	ENSMUSG00000022013	Dnajc15	1110003P16Rik|Dnajd1	DnaJ heat shock protein family (Hsp40) member C15	protein-coding	-0.0403069188631094	-0.371151901791662	-0.374549469577825	-0.228108888533132	0.0589298270394585	-0.190325309694518	-0.373802167265198	-0.3767003786123	0.409182229061262	0.864860434094934	1
Merged-chr1-57500000-1	chr1	57499900	57500100	+	561.0	f0_balb.idr	Intergenic	Intergenic	-93326.0	NM_001302963	68736.0	Mm.288490	NM_001037742	ENSMUSG00000048495	Tyw5	1110034B05Rik	tRNA-yW synthesizing protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-13995666-5	chr14	13995623	13995823	+	927.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16768.0	NM_139227	246103.0	Mm.133625	NM_139227	ENSMUSG00000021738	Atxn7	A430107N12Rik|AI627028|Sca7|ataxin-7	ataxin 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-119499510-3	chr6	119499424	119499624	+	726.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009525, intron 1 of 4)	intron (NM_009525, intron 1 of 4)	19856.0	NM_133940	101358.0	Mm.125477	NM_133940	ENSMUSG00000030019	Fbxl14	AW322056|Fbx14l	F-box and leucine-rich repeat protein 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-118901368-4	chr2	118901268	118901468	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001045523)	promoter-TSS (NM_001045523)	-247.0	NM_001045523	228536.0	Mm.330487	NM_001045523	ENSMUSG00000040007	Bahd1	AL022997|AW541238|Gm117|mKIAA0945	bromo adjacent homology domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35762816-4	chr17	35762716	35762916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9634.0	NR_045459	74601.0	Mm.410840	NR_045459	ENSMUSG00000092171	4833427F10Rik	-	RIKEN cDNA 4833427F10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70158727-4	chr8	70158632	70158832	+	964.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045484, intron 1 of 8)	CpG	5971.0	NM_001045484	17259.0	Mm.432505	NM_008578	ENSMUSG00000079033	Mef2b	AI451606	myocyte enhancer factor 2B	protein-coding	1.64124416573918	1.39057881403486	0.548949422331601	1.16615470199466	0.704657812818918	0.563465070991022	0.551584535089873	0.741413879898451	-3.23126239909427	0.0521422241281927	0.33430837464734
Merged-chr1-88273674-2	chr1	88273574	88273774	+	868.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198652, intron 3 of 7)	intron (NM_198652, intron 3 of 7)	3883.0	NM_172505	212427.0	Mm.384762	NM_172505		A730008H23Rik	Fleg1	RIKEN cDNA A730008H23 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-59477632-2	chr1	59477532	59477732	+	737.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4515.0	NM_008057	14369.0	Mm.297906	NM_008057	ENSMUSG00000041075	Fzd7	Fz7	frizzled class receptor 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-73725519-6	chr15	73725408	73725608	+	938.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001166388, exon 1 of 6)	5' UTR (NM_001166388, exon 1 of 6)	578.0	NM_001166388	19245.0	Mm.390807	NM_008975	ENSMUSG00000059895	Ptp4a3	AV088979|Prl-3|pPtp4a3	protein tyrosine phosphatase 4a3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-61167532-4	chr10	61167422	61167622	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-4442.0	NM_001017419	65971.0	Mm.30227	NM_023064	ENSMUSG00000020096	Tbata	1700021K02Rik|AI428928|Spatial|Titest	thymus, brain and testes associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-61290721-2	chr10	61290621	61290821	+	722.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7115.0	NM_011073	18646.0	Mm.240313	NM_011073	ENSMUSG00000037202	Prf1	Pfn|Pfp|Prf-1	perforin 1 (pore forming protein)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128082170-4	chr10	128082059	128082259	+	999.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1148.0	NM_016774	11947.0	Mm.238973	NM_016774	ENSMUSG00000025393	Atp5b	Atp5f1b	ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-29513851-2	chr19	29513751	29513951	+	697.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_015567, intron 2 of 3)	intron (NR_015567, intron 2 of 3)	8136.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-110408195-4	chr9	110408062	110408262	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081043)	promoter-TSS (NM_001081043)	48.0	NM_001081043	104831.0	Mm.335477	NM_001081043	ENSMUSG00000036057	Ptpn23	AI462446|PTP-TD14	protein tyrosine phosphatase, non-receptor type 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125362286-2	chr6	125362186	125362386	+	707.333374	f1_balb.idr|f1_c57bl6.idr	TTS (NM_198604)	TTS (NM_198604)	12563.0	NM_011609	21937.0	Mm.1258	NM_011609	ENSMUSG00000030341	Tnfrsf1a	CD120a|FPF|TNF-R|TNF-R-I|TNF-R1|TNF-R55|TNF-alphaR1|TNFAR|TNFR60|TNFRI|TNFRp55|TNFalpha-R1|Tnfr-2|Tnfr1|p55|p55-R	tumor necrosis factor receptor superfamily, member 1a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-149649404-2	chr4	149649304	149649504	+	720.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001290989)	TTS (NM_001290989)	6163.0	NR_105990	102465983.0		NR_105990	ENSMUSG00000098580	Mir7023	Gm27912|mmu-mir-7023	microRNA 7023	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-120835605-4	chr7	120835487	120835687	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7244.0	NM_007908	13631.0	Mm.25997	NM_007908	ENSMUSG00000035064	Eef2k	C86191|eEF-2K	eukaryotic elongation factor-2 kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-45047032-2	chr2	45046932	45047132	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355291, intron 2 of 9)	intron (NM_001355291, intron 2 of 9)	-23855.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-21274950-4	chr19	21274800	21275000	+	930.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009551, intron 1 of 5)	intron (NM_009551, intron 1 of 5)	2622.0	NM_009551	22682.0	Mm.292405	NM_009551	ENSMUSG00000024750	Zfand5	2310057A04Rik|5830475F03Rik|AA415485|Za20d2|Zfp216	zinc finger, AN1-type domain 5	protein-coding	0.840691323168873	0.520878227897154	0.74450818521907	0.493726251413394	0.680640077885434	0.524236191351486	1.99800606853309	1.53033813101817	2.89870109480375	0.0689696988668185	0.394547892722865
Merged-chr2-91083698-2	chr2	91083598	91083798	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12980.0	NM_011355	20375.0	Mm.1302	NM_011355	ENSMUSG00000002111	Spi1	Dis-1|Dis1|PU.1|Sfpi-1|Sfpi1|Spi-1|Tcfpu1|Tfpu.1	spleen focus forming virus (SFFV) proviral integration oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-121382938-4	chr5	121382853	121383053	+	934.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359947, intron 2 of 11)	intron (NM_001359947, intron 2 of 11)	2456.0	NM_001359947	231712.0	Mm.20488	NM_172275	ENSMUSG00000042726	Trafd1	1110008K06Rik|Fln29	TRAF type zinc finger domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-110863108-4	chr7	110863005	110863205	+	897.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053247)	promoter-TSS (NM_053247)	-152.0	NM_053247	114332.0	Mm.396078	NM_053247	ENSMUSG00000030787	Lyve1	1200012G08Rik|Crsbp-1|Lyve-1|Xlkd1	lymphatic vessel endothelial hyaluronan receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-46110810-4	chr9	46110697	46110897	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027498, intron 1 of 24)	intron (NM_027498, intron 1 of 24)	97977.0	NM_027498	70661.0	Mm.219459	NM_027498	ENSMUSG00000034135	Sik3	5730525O22Rik|9030204A07Rik|AI447252|AI846254|AI849445|Qsk|SIK-3|mKIAA0999	SIK family kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-53080144-2	chr2	53080044	53080244	+	736.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 9 of 26)	intron (NM_172409, intron 9 of 26)	111043.0	NM_018785	56194.0	Mm.257474	NM_018785	ENSMUSG00000061136	Prpf40a	2810012K09Rik|FBP-11|FBP11|Fnbp11|Fnbp3	pre-mRNA processing factor 40A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-92696675-2	chr1	92696575	92696775	+	650.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47834.0	NM_153114	260301.0	Mm.219545	NM_153114	ENSMUSG00000044055	Otos	OTOSP	otospiralin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-45724394-4	chr17	45724292	45724492	+	927.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9452.0	NM_028164	72240.0	Mm.482897	NM_028164	ENSMUSG00000094690	1600014C23Rik	-	RIKEN cDNA 1600014C23 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47212265-3	chr17	47212144	47212344	+	674.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001097623, intron 3 of 19)	intron (NM_001097623, intron 3 of 19)	-17986.0	NM_172622	224829.0	Mm.260989	NM_172622		Trerf1	9430096I18Rik|AI429294|B830015H24|RAPA|Trep-132|Trep132	transcriptional regulating factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-99083233-2	chr10	99083133	99083333	+	828.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23849.0	NM_027740	382406.0	Mm.440656	NM_027740	ENSMUSG00000019952	Poc1b	4933430F16Rik|Wdr51b	POC1 centriolar protein B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-86683938-4	chr11	86683830	86684030	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175004)	promoter-TSS (NM_175004)	-53.0	NM_175004	217057.0	Mm.24868	NM_175004	ENSMUSG00000072582	Ptrh2	A230072I16Rik|Bit1|CGI-147	peptidyl-tRNA hydrolase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-138216378-4	chr4	138216276	138216476	+	899.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001122896)	promoter-TSS (NM_001122896)	-236.0	NM_001122896	15441.0	Mm.348429	NM_010470	ENSMUSG00000028759	Hp1bp3	Hp1bp74	heterochromatin protein 1, binding protein 3	protein-coding	3.58898801655212	3.80373992810858	3.74934953664929	2.7164321668142	3.67374015717638	2.59176116996874	3.63682637213937	3.59951167810686	-0.116455872434999	0.841455708407649	0.998431161219273
Merged-chr11-75512397-2	chr11	75512297	75512497	+	703.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001029938, exon 7 of 8)	exon (NM_001029938, exon 7 of 8)	-1144.0	NM_001004157	380713.0	Mm.10486	NM_001004157	ENSMUSG00000038188	Scarf1	AA986099|SREC|SREC-I|mKIAA0149	scavenger receptor class F, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-9394552-1	chr14	9394452	9394652	+	553.0	f1_balb.idr	Intergenic	Intergenic	-489543.0	NR_030680	100042415.0	Mm.235938	NR_030680	ENSMUSG00000089686	Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-6367680-4	chr4	6367566	6367766	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001098227, intron 1 of 8)	intron (NM_001098227, intron 1 of 8)	1986.0	NM_001098227	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-62043948-4	chr15	62043862	62044062	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132746, intron 1 of 6)	intron (NR_132746, intron 1 of 6)	4705.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	1.19744851840894	1.60786136084038	1.66057231278587	0.912160603589007	1.53673822157181	1.33577826625282	1.29458445452912	1.39405720654846	0.0334842480560999	0.978213583802636	0.998431161219273
Merged-chr5-123910562-2	chr5	123910462	123910662	+	688.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026603, intron 2 of 7)	intron (NM_026603, intron 2 of 7)	3287.0	NM_026603	68184.0	Mm.28549	NM_026603	ENSMUSG00000023106	Denr	1500003K04Rik	density-regulated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-97568769-2	chr2	97568669	97568869	+	646.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289744, intron 1 of 1)	L1_Mus1|LINE|L1	101112.0	NM_178725	241568.0	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	0.28500388235592	-0.165509005246379	-0.17017695000907	-0.173774458100555	0.0889594353257011	-0.164455962818437	0.502056579074466	-0.173146223413213	1.09897186792016	0.643346525636848	1
Merged-chr15-89196569-4	chr15	89196467	89196667	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027081)	promoter-TSS (NM_027081)	-93.0	NM_027081	69440.0	Mm.482128	NM_027081	ENSMUSG00000015377	Dennd6b	1700027J05Rik|AI414881|Fam116b	DENN/MADD domain containing 6B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-30951368-4	chr14	30951254	30951454	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011849)	promoter-TSS (NM_011849)	-23.0	NM_001308328	23955.0	Mm.251494	NM_011849	ENSMUSG00000021918	Nek4	Stk2	NIMA (never in mitosis gene a)-related expressed kinase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-146784424-4	chr3	146784322	146784522	+	969.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011100, intron 1 of 9)	intron (NM_011100, intron 1 of 9)	-3006.0	NM_001164200	18749.0	Mm.16766	NM_011100	ENSMUSG00000005034	Prkacb	CbPKA|Pkacb	protein kinase, cAMP dependent, catalytic, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124414549-4	chr6	124414454	124414654	+	915.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360570, intron 1 of 14)	intron (NM_001360570, intron 1 of 14)	309.0	NM_001277330	19305.0	Mm.22418	NM_008995	ENSMUSG00000005069	Pex5	AW212715|ESTM1|PTS1-BP|PTS1R|PXR1P|Pxr1|X83306	peroxisomal biogenesis factor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-37120642-2	chr15	37120542	37120742	+	832.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-112394.0	NM_026496	252973.0	Mm.244612	NM_026496	ENSMUSG00000022286	Grhl2	0610015A08Rik|BOM|Tcfcp2l3|clft3	grainyhead like transcription factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-110430004-4	chr11	110429928	110430128	+	918.9652710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356352, intron 1 of 11)	intron (NM_001356352, intron 1 of 11)	30926.0	NM_001356353	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101619668-2	chr7	101619568	101619768	+	729.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38507.0	NM_019915	11872.0	Mm.57008	NM_019915	ENSMUSG00000030651	Art2b	ART2.2|ARTC2|Art|Ly92b|Rt-6|Rt6|Rt6-2	ADP-ribosyltransferase 2b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-158348143-4	chr2	158348046	158348246	+	878.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13363.0	NR_015463	68108.0	Mm.119198	NR_015463		Snhg17	9430008C03Rik	small nucleolar RNA host gene 17	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101095468-4	chr11	101095344	101095544	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008949)	promoter-TSS (NM_008949)	-9.0	NM_008949	19183.0	Mm.18344	NM_008949	ENSMUSG00000019303	Psmc3ip	C79099|GT198|HOP2|Tbpip	proteasome (prosome, macropain) 26S subunit, ATPase 3, interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-149486017-3	chr4	149485905	149486105	+	879.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133435)	promoter-TSS (NM_133435)	739.0	NM_026963	69151.0	Mm.464434	NM_026963	ENSMUSG00000028990	Lzic	1810030J04Rik|AW047580	leucine zipper and CTNNBIP1 domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-42181838-3	chr12	42181736	42181936	+	867.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER20B|LTR|ERVK	-695779.0	NM_010733	16981.0	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-54601734-2	chr3	54601635	54601835	+	656.666626	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	-91080.0	NR_152185	56790.0	Mm.486375	NM_019995	ENSMUSG00000027751	Supt20	AA667204|AI450544|D3Ertd300e|Fam48a|Supt20h|p38IP	suppressor of Ty 20	protein-coding	2.16677252556403	0.879952395927957	1.75417010036157	2.16148265173078	0.816209354193676	0.884699733147099	1.88668972861738	0.844336249823888	-1.93575224437643	0.16846276509787	0.634671212783412
Merged-chr10-57828863-4	chr10	57828734	57828934	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	34290.0	NM_020561	57319.0	Mm.2379	NM_020561	ENSMUSG00000019872	Smpdl3a	0610010C24Rik|AI529588|ASM3A|ASML3|ASML3A	sphingomyelin phosphodiesterase, acid-like 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-52049634-2	chr3	52049534	52049734	+	646.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 1 of 4)	ID_B1|SINE|B4	55372.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94605668-4	chr10	94605576	94605776	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19477.0	NR_106070	102466817.0		NR_106070	ENSMUSG00000098544	Mir7211	Gm27536|mmu-mir-7211	microRNA 7211	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-70532211-4	chr18	70532084	70532284	+	897.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1863.0	NM_001289515	26447.0	Mm.244352	NM_011972	ENSMUSG00000038425	Poli	Rad30b	polymerase (DNA directed), iota	protein-coding	3.81299909217641	3.63577009685483	3.33463120086482	3.49913284185266	3.62104022496608	3.89734705521806	3.77456334416936	3.25710482010392	0.10314698599549	0.839099601776717	0.998431161219273
Merged-chr2-25547014-4	chr2	25546914	25547114	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290413)	promoter-TSS (NM_001290413)	-74.0	NM_009422	22030.0	Mm.3399	NM_009422	ENSMUSG00000026942	Traf2	AI325259	TNF receptor-associated factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-12128641-4	chr18	12128518	12128718	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024182)	promoter-TSS (NM_024182)	-232.0	NM_024182	66878.0	Mm.28551	NM_024182	ENSMUSG00000024404	Riok3	1200013N13Rik|D18Ertd331e|E130306C24Rik|Sudd	RIO kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-57514515-3	chr6	57514418	57514618	+	874.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175523, intron 5 of 6)	intron (NM_175523, intron 5 of 6)	20908.0	NM_175523	243382.0	Mm.396893	NM_175523	ENSMUSG00000037826	Ppm1k	2900063A19Rik|A930026L03Rik|PP2Cm	protein phosphatase 1K (PP2C domain containing)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-21851982-1	chr10	21851882	21852082	+	702.0	f1_balb.idr	Intergenic	Intergenic	-30202.0	NM_001161845	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-105254508-4	chr4	105254379	105254579	+	908.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	97132.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	2.79640560106396	3.82145645618738	2.63381291107236	3.78920061991053	3.56952970642701	4.37656201219465	3.98298461534881	2.56507529050024	0.599316659497964	0.336908325152385	0.83703930093451
Merged-chr11-98265248-2	chr11	98265148	98265348	+	543.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	2642.0	NR_039579	100628613.0		NR_039579	ENSMUSG00000093176	Mir5119	mmu-mir-5119|mu-mir-5119	microRNA 5119	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76331210-4	chr15	76331102	76331302	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010331)	promoter-TSS (NM_010331)	-92.0	NM_010331	14731.0	Mm.5903	NM_010331	ENSMUSG00000022561	Gpaa1	C80044|mGAA1	GPI anchor attachment protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-17561324-3	chr16	17561235	17561435	+	963.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011028)	promoter-TSS (NM_011028)	-88.0	NM_001145435	74685.0	Mm.38634	NM_029053	ENSMUSG00000022759	Lrrc74b	4930451C15Rik|mCG12354|mCP17390	leucine rich repeat containing 74B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127527666-3	chr10	127527566	127527766	+	756.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183297, intron 1 of 1)	intron (NM_183297, intron 1 of 1)	-5222.0	NM_028230	108037.0	Mm.29890	NM_028230	ENSMUSG00000025403	Shmt2	2700043D08Rik|AA408223|AA986903|SHMT	serine hydroxymethyltransferase 2 (mitochondrial)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-87386669-2	chr12	87386569	87386769	+	624.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011479, intron 1 of 11)	intron (NM_011479, intron 1 of 11)	1686.0	NM_011479	20773.0	Mm.565	NM_011479	ENSMUSG00000021036	Sptlc2	LCB2|LCB2a|Spt2	serine palmitoyltransferase, long chain base subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-70792875-4	chr6	70792774	70792974	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009075)	promoter-TSS (NM_009075)	-699.0	NM_009075	19895.0	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-32868363-4	chr16	32868271	32868471	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001200038)	promoter-TSS (NM_001200038)	-5.0	NM_172615	100502698.0	Mm.327319	NM_172615	ENSMUSG00000035629	Rubcn	1700021K19Rik|5330403K09|Rubicon|mKIAA0226	RUN domain and cysteine-rich domain containing, Beclin 1-interacting protein	protein-coding	2.22206431692638	1.15808688373167	1.36161277039969	2.01022995425201	1.5908437798723	2.04793163685639	1.97776970669525	1.66647768505467	0.150848829040685	0.88931179631955	0.998431161219273
Merged-chr13-111802153-2	chr13	111802053	111802253	+	627.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011945, intron 1 of 19)	intron (NM_011945, intron 1 of 19)	6840.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-49254570-2	chr7	49254470	49254670	+	659.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175272, intron 1 of 37)	ORR1B2|LTR|ERVL-MaLR	8381.0	NM_175272	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-32519290-2	chr9	32519190	32519390	+	951.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_008026, intron 1 of 8)	intron (NM_008026, intron 1 of 8)	22162.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102346642-2	chr12	102346556	102346756	+	768.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_177620, intron 3 of 9)	B3|SINE|B2	63015.0	NM_001161365	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	3.67359916822287	3.43612033253418	1.88069770171786	3.07187380175144	3.29380188875373	2.72962920756773	2.48827334719675	2.79608420906168	-0.53855596483976	0.453458264084119	0.919120493489568
Merged-chr3-107279042-4	chr3	107278959	107279159	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026774, exon 1 of 4)	exon (NM_026774, exon 1 of 4)	201.0	NM_026774	68576.0	Mm.290035	NM_026774	ENSMUSG00000087260	Lamtor5	1110003H18Rik|Hbxip|XIP	late endosomal/lysosomal adaptor, MAPK and MTOR activator 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-154314063-4	chr2	154313974	154314174	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001025574, exon 7 of 15)	exon (NM_001025574, exon 7 of 15)	6830.0	NM_001025574	433492.0	Mm.330682	NM_001025574	ENSMUSG00000067996	Bpifb9b	5430413K10Rik|AI413838	BPI fold containing family B, member 9B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-102942743-2	chr2	102942643	102942843	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41078.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-56866560-2	chr4	56866460	56866660	+	811.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-1349.0	NM_018761	54366.0	Mm.218891	NM_018761	ENSMUSG00000038816	Ctnnal1	ACRP|AI616177|AW545119|C86009|Catnal1	catenin (cadherin associated protein), alpha-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100946656-3	chr7	100946585	100946785	+	848.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183168, intron 1 of 2)	intron (NM_183168, intron 1 of 2)	-14524.0	NM_001081116	207212.0	Mm.29954	NM_001081116	ENSMUSG00000032875	Arhgef17	8030463K16|AI428794|AW558066|BC035332|mKIAA0337	Rho guanine nucleotide exchange factor (GEF) 17	protein-coding	-0.206672865482922	-0.000783803399145931	-0.197165076627723	-0.200741319596317	0.35881542370122	-0.191479651691696	-0.196142269328511	0.430005839626785	2.91182341829862	0.221570906419649	1
Merged-chr1-161713161-3	chr1	161713075	161713275	+	997.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	75320.0	NM_001205243	14103.0	Mm.3355	NM_010177	ENSMUSG00000000817	Fasl	APT1LG1|CD178|CD95-L|CD95L|Fas-L|Faslg|Tnfsf6|Tnlg1a|gld	Fas ligand (TNF superfamily, member 6)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127777704-3	chr7	127777615	127777815	+	982.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178029, intron 1 of 18)	CpG	326.0	NM_178029	233904.0	Mm.435494	NM_010940	ENSMUSG00000042308	Setd1a	BC010250|KMT2F|Nsccn1|mKIAA0339|mNSC1	SET domain containing 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-6404169-2	chr15	6404069	6404269	+	710.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037905, intron 1 of 13)	intron (NM_001037905, intron 1 of 13)	17421.0	NM_001310446	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69755425-2	chr11	69755325	69755525	+	603.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291068, intron 1 of 28)	intron (NM_001291068, intron 1 of 28)	3208.0	NM_001291068	20020.0	Mm.16533	NM_009089	ENSMUSG00000005198	Polr2a	220kDa|Rpb1|Rpo2-1	polymerase (RNA) II (DNA directed) polypeptide A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-21587615-2	chr16	21587515	21587715	+	679.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081366, intron 44 of 46)	intron (NM_001081366, intron 44 of 46)	107050.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115163650-2	chr5	115163520	115163720	+	625.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5444.0	NM_175403	109154.0	Mm.153963	NM_175403	ENSMUSG00000048578	Mlec	2410014A08Rik|AI850530|ESTM19|X83352|mKIAA0152	malectin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-11492543-3	chr2	11492446	11492646	+	776.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133232, intron 3 of 14)	intron (NM_133232, intron 3 of 14)	9544.0	NM_001177754	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127587336-2	chr10	127587190	127587390	+	720.166626	f0_balb.idr|f1_balb.idr	intron (NM_008512, intron 15 of 88)	intron (NM_008512, intron 15 of 88)	33858.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90917796-4	chr2	90917684	90917884	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_025576, exon 1 of 5)	exon (NM_025576, exon 1 of 5)	266.0	NM_025576	66461.0	Mm.23926	NM_025576		Ptpmt1	1110001D10Rik|2810004N20Rik|PLIP	protein tyrosine phosphatase, mitochondrial 1	protein-coding	0.47911827518755	0.993786783247605	1.49238834700824	0.500084932758685	0.688027852719719	0.531161621638726	2.01113355638975	0.730920820706105	0.783101350574108	0.61790078838293	0.977517868708383
Merged-chr8-4250002-2	chr8	4249902	4250102	+	763.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001195258, intron 3 of 6)	intron (NM_001195258, intron 3 of 6)	1788.0	NM_001195258	100044509.0	Mm.439193	NM_001195258	ENSMUSG00000089736	Tgfbr3l	Gm14378	transforming growth factor, beta receptor III-like	protein-coding	1.12894778952541	0.663638144964879	0.646194195038249	1.99476490978157	1.1409181616287	0.667496524332118	0.650088960209902	2.00778181367094	0.0309747676542835	0.984086379446642	0.998431161219273
Merged-chr1-136394698-1	chr1	136394598	136394798	+	747.0	f0_balb.idr	Intergenic	Intergenic	-20573.0	NM_026500	67997.0	Mm.385462	NM_026500	ENSMUSG00000026404	Ddx59	1210002B07Rik|4833411G06Rik	DEAD (Asp-Glu-Ala-Asp) box polypeptide 59	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-145116471-3	chr6	145116380	145116580	+	833.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001281980, intron 1 of 18)	intron (NM_001281980, intron 1 of 18)	844.0	NM_001281981	16970.0	Mm.843	NM_008511	ENSMUSG00000030263	Lrmp	D6Int3|D6Int4|D6Int5|D6Int7|D6Int8|Jaw1	lymphoid-restricted membrane protein	protein-coding	1.13035097529143	1.13426156874082	1.09607548558469	1.40752070206899	1.24412086322146	0.765117199846689	0.754624392196455	1.41593523003504	-0.484816237865514	0.729128070007785	0.998431161219273
Merged-chr7-98542345-2	chr7	98542245	98542445	+	677.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	48123.0	NM_001113379	434215.0	Mm.323057	NM_001113379	ENSMUSG00000090958	Lrrc32	AI426318|D11S833Eh|D7H11S833E|EG434215|Garp	leucine rich repeat containing 32	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134897951-4	chr6	134897847	134898047	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001167696)	promoter-TSS (NM_001167696)	-14.0	NR_029441	72813.0	Mm.409034	NR_029441	ENSMUSG00000100876	2810454H06Rik	-	RIKEN cDNA 2810454H06 gene	ncRNA	6.72532518444523	6.60943355441628	6.11972157097732	6.5425706529036	6.91172747824389	7.16980997709544	6.68243172674607	6.91754482034801	0.434933634013542	0.0277803786440423	0.225195509290189
Merged-chr2-108110896-2	chr2	108110796	108110996	+	590.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	820307.0	NM_021275	16492.0	Mm.142718	NM_021275	ENSMUSG00000042604	Kcna4	Kv1.4	potassium voltage-gated channel, shaker-related subfamily, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141065415-2	chr7	141065315	141065515	+	569.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177897, intron 8 of 19)	intron (NM_177897, intron 8 of 19)	4141.0	NM_177897	330671.0	Mm.133741	NM_177897	ENSMUSG00000055629	B4galnt4	BC038881|Gm1095|beta4GalNAcT4	beta-1,4-N-acetyl-galactosaminyl transferase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-94329437-3	chr16	94329333	94329533	+	951.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133229, intron 2 of 3)	intron (NM_133229, intron 2 of 3)	1011.0	NM_133229	170765.0	Mm.42604	NM_133229	ENSMUSG00000022941	Ripply3	Dscr6	ripply transcriptional repressor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-181228577-4	chr1	181228451	181228651	+	858.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16573.0	NM_145514	226757.0	Mm.289082	NM_145514	ENSMUSG00000038733	Wdr26	1600024A01Rik|AA693241|AI447817|AU044014|C77982|Gid7	WD repeat domain 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-4843637-4	chr11	4843550	4843750	+	724.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010898, intron 1 of 15)	B3|SINE|B2	5894.0	NM_001252250	18016.0	Mm.297109	NM_010898	ENSMUSG00000009073	Nf2	merlin	neurofibromin 2	protein-coding	2.32815955576304	2.9426584916705	1.91728365819627	2.84695538264775	2.87100640184822	3.21650004265619	1.43676209286363	2.21037142565631	0.0675699738669274	0.938135271636362	0.998431161219273
Merged-chr12-91185787-1	chr12	91185687	91185887	+	892.5	f0_balb.idr	intron (NM_181815, intron 20 of 25)	intron (NM_181815, intron 20 of 25)	75558.0	NR_030473	735273.0		NR_030473	ENSMUSG00000076118	Mir669c	Mirn669c|Mirn669c-1	microRNA 669c	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114904144-2	chr11	114904044	114904244	+	761.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14103.0	NM_170758	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125360208-4	chr6	125360075	125360275	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011609, intron 5 of 9)	intron (NM_011609, intron 5 of 9)	10452.0	NM_011609	21937.0	Mm.1258	NM_011609	ENSMUSG00000030341	Tnfrsf1a	CD120a|FPF|TNF-R|TNF-R-I|TNF-R1|TNF-R55|TNF-alphaR1|TNFAR|TNFR60|TNFRI|TNFRp55|TNFalpha-R1|Tnfr-2|Tnfr1|p55|p55-R	tumor necrosis factor receptor superfamily, member 1a	protein-coding	5.84287138071457	5.01694592199244	5.91677188931732	5.63919062637193	4.94201110653629	4.07714455995291	4.01650544181549	5.42287526197938	-1.03837343849754	0.00508847874903952	0.0678853610425976
Merged-chr4-53044762-2	chr4	53044662	53044862	+	687.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 39 of 49)	B3|SINE|B2	32882.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-64248992-4	chr13	64248900	64249100	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001122989)	promoter-TSS (NM_001122989)	300.0	NR_045798	66503.0	Mm.443331	NR_045798	ENSMUSG00000097101	1810034E14Rik	-	RIKEN cDNA 1810034E14 gene	ncRNA	5.39403993287062	4.3431691642918	5.62244254478511	4.71484676440161	5.03958062186869	4.93651880651501	4.91640009145739	4.6495962767939	-0.269394040792269	0.454523364961626	0.919120493489568
Merged-chr3-38144301-4	chr3	38144199	38144399	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	63820.0	NR_040541	71342.0	Mm.410782	NR_040541	ENSMUSG00000106002	5430434I15Rik	-	RIKEN cDNA 5430434I15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-116859148-4	chr3	116859050	116859250	+	853.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113478)	promoter-TSS (NM_001113478)	-417.0	NM_001113478	20321.0	Mm.66293	NM_009146	ENSMUSG00000033386	Frrs1	AI131732|Sdfr2	ferric-chelate reductase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-9707623-4	chr18	9707523	9707723	+	975.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_130449)	promoter-TSS (NM_130449)	-25.0	NM_130449	140792.0	Mm.218571	NM_130449	ENSMUSG00000036103	Colec12	CL-P1|SRCL|Scara4	collectin sub-family member 12	protein-coding	1.8872208745343	1.17800327940728	1.15043827919471	1.55997682714761	2.27960601171394	2.57366560549514	2.48304695597229	1.87837946142179	2.34096803394835	0.0267892867952419	0.219189809303791
Merged-chr5-110879838-4	chr5	110879755	110879955	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001267622)	promoter-TSS (NM_001267622)	52.0	NM_001267622	209683.0	Mm.295660	NM_024477	ENSMUSG00000033209	Ttc28	2310015L07Rik|6030435N04|AI428795|AI851761|BC002262|TPRBK	tetratricopeptide repeat domain 28	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70228649-2	chr11	70228549	70228749	+	767.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_007528, exon 3 of 9)	exon (NM_007528, exon 3 of 9)	1149.0	NM_007528	12029.0	Mm.12930	NM_007528	ENSMUSG00000000317	Bcl6b	Bazf	B cell CLL/lymphoma 6, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-35101784-4	chr9	35101688	35101888	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009178, intron 1 of 10)	intron (NM_009178, intron 1 of 10)	-14940.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-100489381-4	chr3	100489269	100489469	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001142952)	promoter-TSS (NM_001142952)	-177.0	NM_001142952	74645.0	Mm.226900	NM_001142952	ENSMUSG00000044468	Fam46c	4930431B09Rik|AI449797	family with sequence similarity 46, member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-105271422-4	chr10	105271322	105271522	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177368, intron 9 of 11)	intron (NM_177368, intron 9 of 11)	303057.0	NM_177368	278279.0	Mm.25225	NM_177368	ENSMUSG00000036019	Tmtc2	8430438D04Rik|D330034A10Rik	transmembrane and tetratricopeptide repeat containing 2	protein-coding	5.00254215405868	4.37976477309761	5.56636179545938	3.65594124133029	4.86027421408949	5.36596106245098	4.39176482781177	4.97513743465626	0.129257823359116	0.762188061255786	0.998431161219273
Merged-chr5-3433379-2	chr5	3433279	3433479	+	888.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 4 of 7)	intron (NM_009873, intron 4 of 7)	89486.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-77277873-4	chr2	77277798	77277998	+	861.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175465, intron 1 of 17)	L1MB7|LINE|L1	2694.0	NM_175465	228071.0	Mm.27120	NM_175465	ENSMUSG00000042272	Sestd1	1500031J16Rik|A930010O20|Solo/Trio8	SEC14 and spectrin domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-35540210-4	chr18	35540114	35540314	+	812.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13196.0	NR_038073	100503380.0	Mm.482118	NR_038073	ENSMUSG00000097769	Snhg4	Gm17457	small nucleolar RNA host gene 4	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-155847408-4	chr4	155847314	155847514	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010091)	promoter-TSS (NM_010091)	12.0	NM_001356381	13542.0	Mm.3400	NM_010091	ENSMUSG00000029071	Dvl1	Dvl|mKIAA4029	dishevelled segment polarity protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-50490869-4	chr17	50490770	50490970	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18677.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70456966-3	chr11	70456922	70457122	+	705.3809200000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151496, intron 4 of 6)	intron (NR_151496, intron 4 of 6)	-2411.0	NM_001348337	574428.0	Mm.425692	NM_001029929	ENSMUSG00000040829	Zmynd15	-	zinc finger, MYND-type containing 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111648542-2	chr12	111648442	111648642	+	967.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_022801, intron 15 of 15)	B3|SINE|B2	23796.0	NM_021273	12709.0	Mm.16831	NM_021273	ENSMUSG00000001270	Ckb	B-CK|Bck|CPK-B|Ck-3|Ck3|Ckbb	creatine kinase, brain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-97789182-4	chr15	97789082	97789282	+	860.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026353, intron 1 of 2)	intron (NM_026353, intron 1 of 2)	4817.0	NM_026353	67739.0	Mm.28955	NM_026353	ENSMUSG00000081534	Slc48a1	4930570C03Rik	solute carrier family 48 (heme transporter), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-45231016-4	chr2	45230917	45231117	+	940.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-113575.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-62172114-1	chr18	62172014	62172214	+	572.0	f0_balb.idr	Intergenic	RLTR17|LTR|ERVK	7867.0	NM_007420	11555.0	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-64303079-4	chr1	64302983	64303183	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-181694.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-123212871-4	chr8	123212780	123212980	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177279)	promoter-TSS (NM_177279)	22.0	NM_177279	320869.0	Mm.258354	NM_177279	ENSMUSG00000048478	Spata33	4732415M23Rik|AI847264	spermatogenesis associated 33	protein-coding	5.8122675691332	5.6956428828049	6.06581783534734	5.78907135523804	5.88493852660021	5.51543886831932	6.15967609788486	5.33503323753803	-0.0948096721300199	0.718247976951318	0.998431161219273
Merged-chr11-85812655-4	chr11	85812560	85812760	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_077059, intron 1 of 4)	intron (NR_077059, intron 1 of 4)	19728.0	NR_077059	69909.0	Mm.440214	NR_077059	ENSMUSG00000087013	2610027K06Rik	-	RIKEN cDNA 2610027K06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-67051310-1	chr7	67051210	67051410	+	644.0	f0_balb.idr	intron (NM_001033877, intron 14 of 22)	intron (NM_001033877, intron 14 of 22)	171148.0	NR_131044	76628.0	Mm.384589	NR_131043	ENSMUSG00000097527	1700112J16Rik	-	RIKEN cDNA 1700112J16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-79490351-2	chr8	79490251	79490451	+	605.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-90883.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3687286-2	chr12	3687186	3687386	+	846.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162465, intron 9 of 17)	intron (NM_001162465, intron 9 of 17)	114302.0	NM_007886	13528.0	Mm.286202	NM_007886	ENSMUSG00000071454	Dtnb	-	dystrobrevin, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75166272-2	chr11	75166172	75166372	+	671.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_001098203, exon 2 of 2)	exon (NM_001098203, exon 2 of 2)	1880.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-12383432-4	chr5	12383307	12383507	+	824.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_028882, exon 1 of 18)	5' UTR (NM_028882, exon 1 of 18)	241.0	NM_028882	108151.0	Mm.89313	NM_028882	ENSMUSG00000040254	Sema3d	4631426B19Rik	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-95347069-4	chr11	95346952	95347152	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172543, intron 1 of 7)	B4A|SINE|B4	10034.0	NM_172543	215512.0	Mm.262113	NM_172543	ENSMUSG00000038893	Fam117a	5730593F17Rik|AW548096	family with sequence similarity 117, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-9449507-3	chr18	9449408	9449608	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026484, intron 1 of 9)	CpG	646.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-164840372-2	chr2	164840272	164840472	+	792.666626	f1_balb.idr|f1_c57bl6.idr	exon (NM_011125, exon 14 of 16)	exon (NM_011125, exon 14 of 16)	6599.0	NM_008906	19025.0	Mm.359633	NM_008906	ENSMUSG00000017760	Ctsa	AU019505|PPCA|Ppgb	cathepsin A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-117146792-4	chr2	117146661	117146861	+	782.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001277256, intron 1 of 4)	intron (NM_001277256, intron 1 of 4)	25690.0	NM_033524	114715.0	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-84549982-4	chr10	84549876	84550076	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040658, intron 2 of 3)	(A)n|Simple_repeat|Simple_repeat	3362.0	NR_040658	442847.0	Mm.128292	NR_040658	ENSMUSG00000097076	Platr7	C330046G13Rik	pluripotency associated transcript 7	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153298612-2	chr2	153298512	153298712	+	708.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008444, intron 1 of 8)	intron (NM_008444, intron 1 of 8)	7196.0	NM_008444	16569.0	Mm.315560	NM_008444	ENSMUSG00000027475	Kif3b	AI854312|AW549267|mKIAA0359	kinesin family member 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-59238123-4	chr1	59238032	59238232	+	836.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028717)	promoter-TSS (NM_028717)	-901.0	NM_028717	74018.0	Mm.272078	NM_028717	ENSMUSG00000026024	Als2	3222402C23Rik|9430073A21Rik|Als2cr6|Alsin|mKIAA1563	alsin Rho guanine nucleotide exchange factor	protein-coding	3.33961498393063	3.16993451354878	1.78709186423867	2.44634162571207	3.64329544490942	2.76757542519536	2.22614315683128	2.31660995949952	0.102619575318712	0.897760590500389	0.998431161219273
Merged-chr11-83728946-2	chr11	83728846	83729046	+	597.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17994.0	NM_183249	66107.0	Mm.902	NM_183249	ENSMUSG00000051748	Wfdc21	1100001G20Rik|Wdnm1-like	WAP four-disulfide core domain 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-120029168-2	chr9	120029068	120029268	+	876.416626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1G3|LTR|ERVL-MaLR	-5570.0	NM_011724	22437.0	Mm.10117	NM_011724	ENSMUSG00000079243	Xirp1	AI415219|Cmya1	xin actin-binding repeat containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-81767199-4	chr8	81767097	81767297	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001297593, intron 4 of 23)	intron (NM_001297593, intron 4 of 23)	424635.0	NM_001297593	234515.0	Mm.324468	NM_001024617	ENSMUSG00000037940	Inpp4b	E130107I17Rik	inositol polyphosphate-4-phosphatase, type II	protein-coding	-0.326903581485386	-0.454405851032306	0.194897121733828	-0.460981803538421	-0.465012193952969	-0.453566713574981	-0.281260289796654	-0.298394451638307	-1.53132634203423	0.53055453694292	1
Merged-chr16-91403251-1	chr16	91403151	91403351	+	550.0	f1_c57bl6.idr	intron (NM_010509, intron 8 of 8)	intron (NM_010509, intron 8 of 8)	-2984.0	NM_008349	16155.0	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-14342447-2	chr9	14342347	14342547	+	678.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38795.0	NM_028013	71946.0	Mm.41423	NM_028013	ENSMUSG00000037419	Endod1	2210414F18Rik|2310067E08Rik|C85344	endonuclease domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-84291440-3	chr17	84291332	84291532	+	689.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183021, intron 29 of 37)	L1M4|LINE|L1	-103485.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-74389521-2	chr1	74389421	74389621	+	616.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2088.0	NM_153088	227292.0	Mm.165042	NM_153088	ENSMUSG00000026176	Ctdsp1	GIP|NLIIF|Nif3|SCP1	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43525577-1	chr4	43525477	43525677	+	631.0	f1_c57bl6.idr	Intergenic	L2c|LINE|L2	-2023.0	NM_001277875	22004.0	Mm.646	NM_009416	ENSMUSG00000028464	Tpm2	Tpm-2|Trop-2	tropomyosin 2, beta	protein-coding	0.273381778403965	0.135584716824507	0.956818966735253	0.12226779068517	0.278239039614542	0.137264645447149	0.971304072796408	0.123288374146779	0.0410553063043932	0.983477566004291	1
Merged-chr2-93155680-2	chr2	93155580	93155780	+	775.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-31868.0	NM_001356536	277414.0	Mm.41033	NM_001025246	ENSMUSG00000068735	Trp53i11	Tp53i11	transformation related protein 53 inducible protein 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88175352-2	chr3	88175252	88175452	+	618.833374	f1_balb.idr|f1_c57bl6.idr	intron (NR_045997, intron 2 of 2)	RCHARR1|DNA|hAT-Charlie	2433.0	NR_045997	76642.0	Mm.424420	NR_045997	ENSMUSG00000096935	1700113A16Rik	2210408E11Rik|AA408983	RIKEN cDNA 1700113A16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-87732536-3	chr6	87732433	87732633	+	693.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159697, intron 1 of 7)	intron (NM_001159697, intron 1 of 7)	1664.0	NM_001159697	58229.0	Mm.333229	NM_021418	ENSMUSG00000068263	Efcc1	Ccdc48	EF hand and coiled-coil domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-62363838-3	chr9	62363750	62363950	+	991.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009672, intron 1 of 6)	CpG	22507.0	NM_009672	11737.0	Mm.269088	NM_009672	ENSMUSG00000032249	Anp32a	Anp32|I1PP2A|LANP|PHAP1|W91701|pp32	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-97993753-4	chr3	97993634	97993834	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19804.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-3314014-4	chr8	3313912	3314112	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34395.0	NM_001330056	16337.0	Mm.268003	NM_010568	ENSMUSG00000005534	Insr	4932439J01Rik|CD220|D630014A15Rik|IR|IR-A|IR-B	insulin receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-105779120-4	chr7	105779029	105779229	+	853.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162943, intron 1 of 20)	MIRb|SINE|MIR	8421.0	NM_001162943	233651.0	Mm.334108	NM_001162943	ENSMUSG00000036862	Dchs1	3110041P15Rik|C130033F22Rik|CDH25|FIB1|Gm165|PCDH16	dachsous cadherin related 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-35126056-2	chr9	35125956	35126156	+	621.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027030, intron 5 of 5)	intron (NM_027030, intron 5 of 5)	-9192.0	NM_009178	20443.0	Mm.275973	NM_009178	ENSMUSG00000032038	St3gal4	SIAT4-C|ST3Gal IV|ST3GalIV|Siat4c	ST3 beta-galactoside alpha-2,3-sialyltransferase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-8869978-2	chr16	8869878	8870078	+	669.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39878.0	NM_001081400	69053.0	Mm.390868	NM_001081400	ENSMUSG00000022507	1810013L24Rik	1110017P05Rik|3010002C02Rik|AA792997|AW124177|Gm19906|R74903	RIKEN cDNA 1810013L24 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-26884590-4	chr8	26884503	26884703	+	936.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60180.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-59336724-3	chr2	59336624	59336824	+	919.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 12 of 20)	intron (NM_175464, intron 12 of 20)	49958.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-4044706-4	chr18	4044611	4044811	+	838.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-121121.0	NM_026092	67328.0	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-116185418-4	chr3	116185338	116185538	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-55750.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44259238-2	chr9	44259138	44259338	+	722.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178420, intron 6 of 9)	intron (NM_178420, intron 6 of 9)	-7774.0	NM_133226	170761.0	Mm.29872	NM_133226	ENSMUSG00000032105	Pdzd3	NaPi-Cap2|Pdzk2	PDZ domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-44245957-3	chr19	44245866	44246066	+	910.9722289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42678.0	NM_024450	30049.0	Mm.480594	NM_024450	ENSMUSG00000025202	Scd3	4930513N16Rik	stearoyl-coenzyme A desaturase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-35710483-4	chr7	35710339	35710539	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178704, intron 12 of 18)	intron (NM_178704, intron 12 of 18)	44015.0	NM_178704	233115.0	Mm.257808	NM_178704	ENSMUSG00000043671	Dpy19l3	6030410G08|9330164H19Rik	dpy-19-like 3 (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-34794525-2	chr2	34794425	34794625	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145522, intron 3 of 7)	intron (NM_145522, intron 3 of 7)	5387.0	NM_145522	227746.0	Mm.158705	NM_145522	ENSMUSG00000070953	Rabepk	8430412M01Rik|9530020D24Rik|AV073337|C87311|Rab9p40	Rab9 effector protein with kelch motifs	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-58370864-2	chr10	58370764	58370964	+	626.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_201242)	promoter-TSS (NM_201242)	-590.0	NM_201242	110829.0	Mm.57734	NM_026148	ENSMUSG00000019920	Lims1	2310016J22Rik|4921524A02Rik|AI507642|AU021743|AW551584|C430041B13Rik|Lims1l|PINCH|PINCH1	LIM and senescent cell antigen-like domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-140763766-4	chr6	140763661	140763861	+	852.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	136876.0	NM_001309436	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-29998570-4	chr17	29998449	29998649	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6490.0	NM_148926	21769.0	Mm.220972	NM_148926	ENSMUSG00000044477	Zfand3	AW539211|TEG-27|Tex27	zinc finger, AN1-type domain 3	protein-coding	4.58664678219046	4.73851772512589	4.38717067258953	4.4737080584374	4.82159058972387	4.44351271392123	4.52665923958244	4.71261713277046	0.11239480994775	0.752953070530057	0.998431161219273
Merged-chr17-35919492-1	chr17	35919392	35919592	+	701.0	f0_balb.idr	5' UTR (NM_001357740, exon 1 of 19)	5' UTR (NM_001357740, exon 1 of 19)	220.0	NM_001357740	52040.0	Mm.29385	NM_175934	ENSMUSG00000039220	Ppp1r10	2610025H06Rik|Cat53|D17Ertd808e|Fb19|Pnuts	protein phosphatase 1, regulatory subunit 10	protein-coding	2.03416966738792	2.39742167111722	2.57473720135262	2.14645839685484	2.05141067659793	1.24937445848925	1.66794134564494	1.43000430869862	-1.79405036098835	0.0719379560414515	0.40407846282085
Merged-chr10-68705790-3	chr10	68705682	68705882	+	733.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17964.0	NM_177794	327766.0	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-137779723-2	chr5	137779623	137779823	+	657.333374	f1_balb.idr|f1_c57bl6.idr	exon (NM_027242, exon 3 of 4)	exon (NM_027242, exon 3 of 4)	819.0	NM_027242	69871.0	Mm.276058	NM_027242	ENSMUSG00000029725	Ppp1r35	2010007H12Rik|2010011D20Rik|AL024004	protein phosphatase 1, regulatory subunit 35	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81499630-2	chr10	81499530	81499730	+	950.833374	f1_balb.idr|f1_c57bl6.idr	exon (NM_010102, exon 1 of 1)	exon (NM_010102, exon 1 of 1)	507.0	NM_010102	13611.0	Mm.33065	NM_010102	ENSMUSG00000044199	S1pr4	Edg6|Lpc1|S1p4	sphingosine-1-phosphate receptor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70701534-4	chr8	70701482	70701682	+	939.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010592)	TTS (NM_010592)	3843.0	NM_001286944	16478.0	Mm.419851	NM_010592	ENSMUSG00000071076	Jund	Jund1	jun D proto-oncogene	protein-coding	3.44743762474766	2.64214193116822	1.23563019819208	1.71018533464928	3.34953918374896	2.66348655153558	1.2457644402252	1.72031601883233	-0.0789725182302334	0.939851141514212	0.998431161219273
Merged-chr19-6018320-4	chr19	6018225	6018425	+	942.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045783, exon 5 of 5)	non-coding (NR_045783, exon 5 of 5)	-2500.0	NM_001110504	12333.0	Mm.6221	NM_007600	ENSMUSG00000024942	Capn1	Capa-1|Capa1|mu-calpin	calpain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-155082538-6	chr2	155082468	155082668	+	784.972229	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8071.0	NM_016661	269378.0	Mm.330692	NM_016661	ENSMUSG00000027597	Ahcy	AA987153|AL024110|CuBP|SAHH	S-adenosylhomocysteine hydrolase	protein-coding	0.730040160996465	1.15381368210181	1.23074175555847	1.5590804810416	0.562967062058645	1.16480825223483	0.587205074745902	0.577323630016832	-2.24824101690199	0.160150288321725	0.62016942789409
Merged-chr3-97206673-4	chr3	97206552	97206752	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029933, intron 9 of 9)	intron (NM_029933, intron 9 of 9)	20712.0	NM_029933	77578.0	Mm.226175	NM_029933	ENSMUSG00000038256	Bcl9	2610202E01Rik|8030475K17Rik|A330041G23Rik|Gm130	B cell CLL/lymphoma 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84670567-2	chr8	84670522	84670722	+	699.833374	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_025788, exon 6 of 6)	3' UTR (NM_025788, exon 6 of 6)	-7770.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	0.010044209519807	-0.701676338075148	-0.70511645401038	-0.70776913082069	-0.435179753865902	-0.700900605858916	-0.704357891300858	-0.707305810832751	-1.58605852099978	0.589593722410866	1
Merged-chr17-84293363-4	chr17	84293284	84293484	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183021, intron 29 of 37)	intron (NM_183021, intron 29 of 37)	-105437.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-121723217-7	chr3	121723107	121723307	+	969.9892580000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010171)	promoter-TSS (NM_010171)	-330.0	NM_010171	14066.0	Mm.273188	NM_010171	ENSMUSG00000028128	F3	AA409063|CD142|Cf-3|Cf3|TF	coagulation factor III	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-59195265-3	chr12	59195113	59195313	+	882.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24270.0	NM_001033156	70611.0	Mm.311026	NM_001033156	ENSMUSG00000035329	Fbxo33	5730501N20Rik|AI642135	F-box protein 33	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-112330415-2	chr12	112330315	112330515	+	615.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	92783.0	NR_036459	100504733.0	Mm.255309	NM_176956	ENSMUSG00000047828	A730018C14Rik	-	RIKEN cDNA A730018C14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-28081368-2	chr15	28081268	28081468	+	579.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55520.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-12814056-1	chr10	12813956	12814156	+	598.0	f0_balb.idr	intron (NM_011682, intron 1 of 73)	intron (NM_011682, intron 1 of 73)	47679.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	2.90031998228758	2.35804027992726	2.41504608293605	2.5699960357623	2.98459307555101	2.51535222244952	1.75754844036635	2.36049229208031	-0.194636156533579	0.80814018421206	0.998431161219273
Merged-chr15-98777979-2	chr15	98777879	98778079	+	805.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_011718, exon 1 of 5)	5' UTR (NM_011718, exon 1 of 5)	171.0	NM_011718	22410.0	Mm.4709	NM_011718	ENSMUSG00000022996	Wnt10b	Wnt12	wingless-type MMTV integration site family, member 10B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120590257-2	chr8	120590157	120590357	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1182.0	NM_178856	272551.0	Mm.275910	NM_178856	ENSMUSG00000031821	Gins2	2210013I18Rik|4833427B12Rik|AI323585|Pfs2	GINS complex subunit 2 (Psf2 homolog)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-41098316-3	chr4	41098241	41098441	+	704.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016689)	promoter-TSS (NM_016689)	-158.0	NM_016689	11828.0	Mm.34043	NM_016689	ENSMUSG00000028435	Aqp3	AQP-2	aquaporin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-109253534-2	chr3	109253434	109253634	+	762.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	-87149.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-17294621-3	chr10	17294515	17294715	+	878.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-198833.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-118507752-6	chr14	118507642	118507842	+	810.900024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163676, intron 25 of 29)	intron (NM_001163676, intron 25 of 29)	84730.0	NR_105815	102465208.0		NR_105815	ENSMUSG00000098433	Mir6391	Gm27914|mmu-mir-6391	microRNA 6391	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-70991186-1	chr17	70991086	70991286	+	1000.0	f1_balb.idr	promoter-TSS (NM_023402)	promoter-TSS (NM_023402)	-670.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	0.667523861123329	0.715058297284522	0.92398042640327	1.46544953697005	1.15880036315873	0.71842890169643	1.98842478243771	1.47490904730394	1.63395142313255	0.265237122099105	0.767868802425779
Merged-chr11-114793716-2	chr11	114793616	114793816	+	732.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028055, intron 2 of 2)	intron (NM_028055, intron 2 of 2)	2176.0	NM_028055	72014.0	Mm.38347	NM_028055	ENSMUSG00000000202	Btbd17	1500005I02Rik|Tango10a	BTB (POZ) domain containing 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-66188562-2	chr14	66188462	66188662	+	612.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 4 of 30)	B2_Mm2|SINE|B2	25262.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-75001292-1	chr18	75001192	75001392	+	550.0	f0_balb.idr	TTS (NR_028552).2	TTS (NR_028552).2	224.0	NR_028552	100217457.0		NR_028552	ENSMUSG00000064871	Snord58b	MBII-199	small nucleolar RNA, C/D box 58B	snoRNA	1.17774743788887	1.22431307236457	1.59936629061397	0.653852061587164	0.953785401779803	1.36921412311097	0.665378738366579	0.655426266937566	-1.14001342861215	0.454375829204463	0.919120493489568
Merged-chr4-116822260-2	chr4	116822160	116822360	+	881.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146256)	promoter-TSS (NM_146256)	-752.0	NM_146256	242642.0	Mm.279897	NM_146256	ENSMUSG00000043155	Hpdl	A830048M07Rik|BC034099|Gloxd1	4-hydroxyphenylpyruvate dioxygenase-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127118789-4	chr7	127118729	127118929	+	988.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133686, intron 1 of 3)	RSINE1|SINE|B4	3200.0	NM_133686	67375.0	Mm.26928	NM_133686	ENSMUSG00000030674	Qprt	2410027J01Rik|AI647766|QPRTase	quinolinate phosphoribosyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127552589-1	chr10	127552489	127552689	+	657.0	f1_c57bl6.idr	intron (NM_008512, intron 61 of 88)	intron (NM_008512, intron 61 of 88)	-18030.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	0.62923762988105	0.135026757513944	1.03697807011035	0.122054802962017	0.113978125742522	0.678464597783662	0.129341510573155	0.123048190691559	-1.58750575568073	0.452478786966663	1
Merged-chr9-22394958-4	chr9	22394851	22395051	+	815.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-5745.0	NM_028390	68743.0	Mm.282751	NM_028390	ENSMUSG00000036777	Anln	1110037A17Rik|2900037I21Rik|C78101|Scraps	anillin, actin binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-20130680-2	chr10	20130580	20130780	+	631.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008580, intron 25 of 29)	PB1D10|SINE|Alu	-18240.0	NM_008635	17761.0	Mm.20928	NM_008635	ENSMUSG00000019996	Map7	E-MAP-115|MAP-7|Mtap7|R75000|mshi|mste|ste	microtubule-associated protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-80339710-1	chr1	80339610	80339810	+	580.0	f0_balb.idr	intron (NM_016716, intron 1 of 15)	intron (NM_016716, intron 1 of 15)	980.0	NM_001313728	26554.0	Mm.12665	NM_016716	ENSMUSG00000004364	Cul3	KIAA0617	cullin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-125274555-3	chr10	125274464	125274664	+	851.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358496, intron 3 of 5)	intron (NM_001358496, intron 3 of 5)	34252.0	NM_001358915	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-146532637-2	chr4	146532537	146532737	+	662.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001243139, intron 2 of 3)	intron (NM_001243139, intron 2 of 3)	14236.0	NR_045468	67524.0	Mm.444300	NR_045468	ENSMUSG00000086046	1700095A21Rik	-	RIKEN cDNA 1700095A21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55738312-2	chr19	55738211	55738411	+	576.0	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-3499.0	NM_001331147	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.827915179514316	0.92585463426017	0.895577128772212	1.13998032258524	2.05903138581672	1.47690280350863	2.67745190077445	2.77022611727378	5.01435245364244	0.000214830542745294	0.00569696321114631
Merged-chr3-65586116-1	chr3	65586016	65586216	+	778.0	f0_balb.idr	Intergenic	B1_Mur4|SINE|Alu	-56702.0	NR_027955	71004.0	Mm.475465	NM_001033527	ENSMUSG00000074580	4931440P22Rik	-	RIKEN cDNA 4931440P22 gene	ncRNA	-0.833322680419107	-1.06537996647058	-0.911943784875619	-1.08191568657389	-0.827372954492842	-1.06306951244974	-1.0736281596689	-1.08161087532968	-0.516653322221051	0.866307007794748	1
Merged-chr2-30267635-1	chr2	30267535	30267735	+	550.0	f1_c57bl6.idr	intron (NM_001252571, intron 1 of 9)	intron (NM_001252571, intron 1 of 9)	816.0	NM_001252570	227696.0	Mm.297949	NM_172267	ENSMUSG00000079484	Phyhd1	-	phytanoyl-CoA dioxygenase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-181523006-3	chr2	181522903	181523103	+	759.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271584, intron 2 of 5)	B2_Mm2|SINE|B2	2518.0	NM_001271584	13002.0	Mm.140761	NM_016775	ENSMUSG00000000826	Dnajc5	2610314I24Rik|AU018536|Csp	DnaJ heat shock protein family (Hsp40) member C5	protein-coding	1.20655778035816	1.0899921044953	0.782405584372531	1.01421540526076	0.965726617600101	0.628157148790377	0.78739092002732	0.767996514329788	-1.39514007761148	0.3418721955359	1
Merged-chr7-83632440-2	chr7	83632363	83632563	+	984.0	f0_c57.idr|f1_balb.idr	intron (NM_023377, intron 1 of 5)	intron (NM_023377, intron 1 of 5)	446.0	NM_023377	170460.0	Mm.357953	NM_023377	ENSMUSG00000046027	Stard5	2310058G22Rik|AI607880|D7Ertd152e	StAR-related lipid transfer (START) domain containing 5	protein-coding	1.53144427992615	1.87094019742888	2.10461103960181	1.62244553083461	0.898660430247665	0.963878935527834	2.12334652484163	0.92534577960748	-1.31786205492273	0.310796994189466	0.811934025900395
Merged-chr9-121298758-2	chr9	121298658	121298858	+	808.375	f1_balb.idr|f1_c57bl6.idr	intron (NR_152160, intron 1 of 17)	intron (NR_152160, intron 1 of 17)	1256.0	NR_152160	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-80259595-2	chr18	80259495	80259695	+	734.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025861, intron 2 of 5)	intron (NM_025861, intron 2 of 5)	3289.0	NM_025861	66943.0	Mm.29247	NM_025861	ENSMUSG00000034006	Pqlc1	2310009N05Rik|4933425L21Rik|5730564E11Rik|C78974	PQ loop repeat containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-36190806-2	chr13	36190706	36190906	+	572.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039189, intron 1 of 5)	Tigger17a|DNA|TcMar-Tigger	73163.0	NM_001039189	69955.0	Mm.70690	NM_024274	ENSMUSG00000021420	Fars2	Fars1|pheRS	phenylalanine-tRNA synthetase 2 (mitochondrial)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-51559032-2	chr6	51558932	51559132	+	680.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361577, intron 1 of 6)	B2_Mm2|SINE|B2	13739.0	NM_001361577	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-121143711-2	chr4	121143611	121143811	+	654.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-34485.0	NM_001081312	69469.0	Mm.481120	NM_001081312	ENSMUSG00000078577	Tmco2	1700028F16Rik	transmembrane and coiled-coil domains 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-46449935-5	chr11	46449885	46450085	+	615.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4946.0	NM_134250	171285.0	Mm.72168	NM_134250	ENSMUSG00000020399	Havcr2	TIM-3|Tim3|Timd3	hepatitis A virus cellular receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80215532-2	chr7	80215432	80215632	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360135, intron 3 of 13)	intron (NM_001360135, intron 3 of 13)	17091.0	NM_001360135	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-137724962-4	chr4	137724855	137725055	+	998.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081155, intron 19 of 24)	intron (NM_001081155, intron 19 of 24)	494.0	NR_138592	110351.0	Mm.180763	NM_029563	ENSMUSG00000041351	Rap1gap	1300019I11Rik|2310004O14Rik|AI427470|ARPP-90|Gap|Rap1GAP1|Rap1ga1	Rap1 GTPase-activating protein	protein-coding	5.83689039887666	4.99754750224492	6.16627711067527	6.14878179857697	4.7975316802841	5.60130581491994	5.88592559336741	6.05478855293462	-0.231434117567887	0.476241105529993	0.927406040011522
Merged-chr16-11908883-2	chr16	11908783	11908983	+	938.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_033509, intron 2 of 2)	intron (NR_033509, intron 2 of 2)	540.0	NM_146067	223978.0	Mm.86360	NM_146067	ENSMUSG00000065979	Cpped1	C530044N13Rik	calcineurin-like phosphoesterase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-92150833-4	chr3	92150715	92150915	+	867.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8061.0	NM_027042	69332.0	Mm.120271	NM_027042	ENSMUSG00000027927	Lelp1	1700012F11Rik	late cornified envelope-like proline-rich 1	protein-coding	-1.84436392554074	-1.52091821270385	-1.82290882857571	-1.83054882630441	-1.84220491470818	-1.81159244170985	-1.82080331928423	-1.82918127036376	-1.56828060379516	0.655578384384393	1
Merged-chr17-17585318-4	chr17	17585221	17585421	+	910.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172827, intron 1 of 17)	intron (NM_172827, intron 1 of 17)	39168.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-10459783-3	chr10	10459700	10459900	+	763.1777950000001	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	intron (NM_001127353, intron 1 of 36)	MamRep38|DNA|hAT	12514.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	2.55780958985292	3.32756964944933	2.97792875998183	2.80183474705737	1.29445353190543	2.38505017093483	1.40535510052188	3.44820052205933	-0.866563492529306	0.347693339458619	0.847729374170411
Merged-chr18-35730490-4	chr18	35730386	35730586	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001033168, exon 2 of 2)	3' UTR (NM_001033168, exon 2 of 2)	3497.0	NM_001033168	73449.0	Mm.379225	NM_001033168	ENSMUSG00000073598	1700066B19Rik	SMIM33	RIKEN cDNA 1700066B19 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106153696-4	chr11	106153612	106153812	+	988.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011947, intron 15 of 15)	intron (NM_011947, intron 15 of 15)	6215.0	NM_001356459	67803.0	Mm.21687	NM_172397	ENSMUSG00000040699	Limd2	0610025L06Rik|AI413966	LIM domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32718995-2	chr2	32718895	32719095	+	717.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2060.0	NR_045535	27387.0	Mm.9593	NM_013781	ENSMUSG00000059013	Sh2d3c	Chat|Nsp3|Shep1	SH2 domain containing 3C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-65170152-2	chr14	65170052	65170252	+	627.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72046.0	NM_001360385	54616.0	Mm.103748	NM_018788	ENSMUSG00000021978	Extl3	2900009G18Rik|AU040105|Ext1l|mKIAA0519	exostoses (multiple)-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95680658-2	chr3	95680558	95680758	+	733.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301705, intron 11 of 17)	intron (NM_001301705, intron 11 of 17)	7259.0	NM_144899	229595.0	Mm.490574	NM_144899	ENSMUSG00000015850	Adamtsl4	ADAMTSL-4|Tsrc1	ADAMTS-like 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-149460933-3	chr3	149460836	149461036	+	653.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	186199.0	NR_040591	381482.0	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-98591228-3	chr1	98591118	98591318	+	703.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	IAP1-MM_I-int|LTR|ERVK	170094.0	NM_027584	70866.0	Mm.389164	NM_027584	ENSMUSG00000026336	Slco6d1	4921511I05Rik	solute carrier organic anion transporter family, member 6d1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-87526437-4	chr3	87526350	87526550	+	943.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286844, intron 1 of 4)	intron (NM_001286844, intron 1 of 4)	872.0	NM_001359750	27049.0	Mm.219460	NM_012051	ENSMUSG00000003382	Etv3	AI414410|METS|Pe1	ets variant 3	protein-coding	0.825650108505039	0.185871970101348	0.179232516793597	0.174093886694051	0.755392336703705	0.187365508919273	0.180698870347168	0.829674084750518	0.877867785882226	0.677628031594257	1
Merged-chr5-30833521-2	chr5	30833421	30833621	+	784.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133350, intron 1 of 6)	MLT1C|LTR|ERVL-MaLR	18880.0	NM_133350	100732.0	Mm.332295	NM_133350	ENSMUSG00000029166	Mapre3	AI790651|EB2|EB3|EBF3|RP3	microtubule-associated protein, RP/EB family, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70491312-2	chr11	70491212	70491412	+	849.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13962.0	NM_029360	75604.0	Mm.24400	NM_029360	ENSMUSG00000018919	Tm4sf5	2010003F10Rik|AI323987	transmembrane 4 superfamily member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-103304759-2	chr15	103304659	103304859	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5679.0	NM_030720	80910.0	Mm.160369	NM_030720	ENSMUSG00000063234	Gpr84	EX33	G protein-coupled receptor 84	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-56707710-4	chr18	56707604	56707804	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010721)	promoter-TSS (NM_010721)	-109.0	NM_010721	16906.0	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-121865281-4	chr14	121865108	121865308	+	815.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F3|LINE|L1	13062.0	NR_131002	78312.0	Mm.188743	NR_130999	ENSMUSG00000102112	1810041H14Rik	-	RIKEN cDNA 1810041H14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-124128637-2	chr9	124128537	124128737	+	877.1666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7094.0	NM_009917	12774.0	Mm.14302	NM_009917	ENSMUSG00000079227	Ccr5	AM4-7|CD195|Cmkbr5	chemokine (C-C motif) receptor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-18893843-3	chr14	18893744	18893944	+	995.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360328)	promoter-TSS (NM_001360328)	-73.0	NM_144839	218793.0	Mm.23551	NM_144839	ENSMUSG00000058317	Ube2e2	BC016265	ubiquitin-conjugating enzyme E2E 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-170119441-4	chr2	170119345	170119545	+	819.229187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001159683, exon 3 of 7)	exon (NM_001159683, exon 3 of 7)	11775.0	NM_001033299	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-56701048-1	chr19	56700948	56701148	+	810.0	f0_balb.idr	Intergenic	Intergenic	-21324.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-54797497-1	chr13	54797397	54797597	+	647.0	f1_c57bl6.idr	TTS (NM_028841)	TTS (NM_028841)	8092.0	NM_028841	74257.0	Mm.32883	NM_028841	ENSMUSG00000025875	Tspan17	2210021G21Rik|AI047581|Fbxo23|Tm4sf17	tetraspanin 17	protein-coding	-2.18138529563533	-2.15523716995652	-2.1631445789866	-2.16963996020037	-2.05513010215571	-2.15352360143315	-2.16135451490766	-2.16847729006863	0.759018020146679	0.829933115115583	1
Merged-chr17-3273907-3	chr17	3273858	3274058	+	688.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52615.0	NM_001122998	24001.0	Mm.137134	NM_011878	ENSMUSG00000023800	Tiam2	3000002F19Rik|STEF|mKIAA2016	T cell lymphoma invasion and metastasis 2	protein-coding	2.95244056506182	1.37776421722655	2.36770050741558	2.54468083241146	1.43291550518729	1.09833466278804	1.06724610588803	1.68996277202759	-2.95179281997977	0.00847651580597707	0.0967354819024536
Merged-chr9-66503967-2	chr9	66503867	66504067	+	594.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145617, intron 76 of 77)	intron (NM_145617, intron 76 of 77)	10626.0	NM_175206	74165.0	Mm.297998	NM_175206	ENSMUSG00000050503	Fbxl22	1110004B15Rik	F-box and leucine-rich repeat protein 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127293278-2	chr7	127293178	127293378	+	547.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA4A|LINE|L1	-2982.0	NM_001253873	16408.0	Mm.1618	NM_008400	ENSMUSG00000030830	Itgal	(p180)|Cd11a|LFA-1|LFA-1A|Ly-15|Ly-21	integrin alpha L	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-55209204-4	chr18	55209093	55209293	+	966.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur2|SINE|Alu	-216602.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-26687802-4	chr8	26687706	26687906	+	791.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	136617.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-107405803-4	chr11	107405699	107405899	+	974.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 1 of 9)	RSINE1|SINE|B4	64921.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80691014-2	chr10	80690914	80691114	+	665.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172457, intron 2 of 3)	intron (NM_172457, intron 2 of 3)	10806.0	NM_172457	208228.0	Mm.49309	NM_172457	ENSMUSG00000003348	Mob3a	5330417K06Rik|A630029F06|AV218468|Mobkl2a	MOB kinase activator 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78879321-4	chr15	78879219	78879419	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145929, intron 1 of 16)	intron (NM_145929, intron 1 of 16)	2129.0	NM_145929	106039.0	Mm.251331	NM_145929	ENSMUSG00000033128	Gga1	4930406E12Rik|AU016030|AW209092	golgi associated, gamma adaptin ear containing, ARF binding protein 1	protein-coding	4.11979009439246	3.7469018284946	4.72641011053451	3.82251010651893	4.00762496246514	2.91929111176761	4.15380630569545	4.24872362335486	-0.317158939835289	0.521634360553347	0.947836760490745
Merged-chr1-156039044-2	chr1	156038920	156039120	+	922.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_172843, intron 1 of 6)	B1_Mm|SINE|Alu	-1820.0	NM_001358626	240832.0	Mm.253335	NM_022329	ENSMUSG00000050565	Tor1aip2	1110020D10Rik|15kDa|A130072J07|AA103493|AW060462|AW610675|C77739|Ifrg15|Lull1	torsin A interacting protein 2	protein-coding	-0.380586293525452	-0.506338010581232	-0.509792188937463	0.0915600865716401	-0.376819569783767	-0.31635436817183	-0.509031558257114	-0.511984240363677	-1.50545052016667	0.543937145477904	1
Merged-chr8-105410751-2	chr8	105410651	105410851	+	596.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301173, intron 1 of 15)	MTEa|LTR|ERVL-MaLR	2751.0	NM_177791	279499.0	Mm.67628	NM_177791	ENSMUSG00000051648	Kctd19	4922504H04Rik	potassium channel tetramerisation domain containing 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97788748-4	chr6	97788654	97788854	+	876.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR33A|LTR|ERVL	-18304.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-90447070-4	chr9	90446935	90447135	+	682.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-176266.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76350637-4	chr15	76350506	76350706	+	965.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164608)	promoter-TSS (NM_001164608)	504.0	NM_025340	106025.0	Mm.41463	NM_025340	ENSMUSG00000022552	Sharpin	0610041B22Rik|AW121341|RBCKL1|SIPL1|cpdm	SHANK-associated RH domain interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-31446243-4	chr2	31446136	31446336	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24034.0	NM_007494	11898.0	Mm.3217	NM_007494	ENSMUSG00000076441	Ass1	AA408052|ASS|Ass-1|fold	argininosuccinate synthetase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-13532741-2	chr17	13532641	13532841	+	983.333374	f1_balb.idr|f1_c57bl6.idr	intron (NR_045437, intron 2 of 3)	intron (NR_045437, intron 2 of 3)	11285.0	NR_030763	272667.0	Mm.444718	NR_030763	ENSMUSG00000079711	Smok4a	4930513D10Rik|Smok2c	sperm motility kinase 4A	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-43770897-2	chr19	43770797	43770997	+	784.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11411.0	NM_013806	12780.0	Mm.39054	NM_013806	ENSMUSG00000025194	Abcc2	AI173996|Abc30|Cmoat|Mrp2|cMRP	ATP-binding cassette, sub-family C (CFTR/MRP), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-105092783-4	chr1	105092716	105092916	+	702.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-263191.0	NR_151539	100504568.0	Mm.321153	NR_151538	ENSMUSG00000097482	Gm17634	-	predicted gene, 17634	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-58533518-4	chr2	58533386	58533586	+	941.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110204, intron 2 of 12)	intron (NM_001110204, intron 2 of 12)	27924.0	NM_001355049	11477.0	Mm.689	NM_007394	ENSMUSG00000026836	Acvr1	ALK2|ActR-I|ActRIA|Acvr|Acvrlk2|Alk-2|Alk8|D330013D15Rik|SKR1|Tsk7L	activin A receptor, type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-70129293-1	chr12	70129193	70129393	+	696.0	f0_balb.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-17258.0	NR_104397	18080.0	Mm.244047	NM_008697	ENSMUSG00000021068	Nin	3110068G20Rik|AI385615|AU024711|mKIAA1565	ninein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-148770557-1	chr3	148770457	148770657	+	609.0	f0_balb.idr	Intergenic	Intergenic	184078.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	-1.8429182434137	-1.8129848525291	-1.82203695700074	-1.54461076807193	-1.84081697472045	-1.81102322372834	-1.81998775896484	-1.82814164409203	-1.43114970378833	0.684630132144154	1
Merged-chr12-51729229-3	chr12	51729133	51729333	+	883.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001329698, intron 4 of 5)	intron (NM_001329698, intron 4 of 5)	-37319.0	NM_052973	94186.0	Mm.65979	NM_052973	ENSMUSG00000020954	Strn3	Gs2na|SG2NA	striatin, calmodulin binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-76961235-2	chr10	76961135	76961335	+	664.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347216, intron 1 of 15)	intron (NM_001347216, intron 1 of 15)	712.0	NM_001347216	59093.0	Mm.272803	NM_021568	ENSMUSG00000001120	Pcbp3	AlphaCP-3	poly(rC) binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-57744962-2	chr6	57744862	57745062	+	559.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42507.0	NM_133737	71835.0	Mm.274904	NM_133737	ENSMUSG00000062190	Lancl2	1700003F10Rik	LanC (bacterial lantibiotic synthetase component C)-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-100908401-1	chr8	100908301	100908501	+	690.0	f1_balb.idr	Intergenic	Lx4A|LINE|L1	1491727.0	NR_132435	234624.0	Mm.124595	NM_175479	ENSMUSG00000052479	A330008L17Rik	-	RIKEN cDNA A330008L17 gene	ncRNA	-1.13146769101922	-1.10460487238646	-1.11735372523027	-1.12713099301154	-1.13082009585647	-0.300663969208598	-1.11446766439333	-1.12595147812057	3.06518455575839	0.353555291099784	1
Merged-chr7-49764195-4	chr7	49764130	49764330	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146053, intron 3 of 5)	intron (NM_001146053, intron 3 of 5)	4718.0	NM_001146052	53415.0	Mm.20801	NM_016865	ENSMUSG00000039745	Htatip2	AW111545|Cc3|Tip30	HIV-1 Tat interactive protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-101770289-1	chr13	101770189	101770389	+	544.0	f1_balb.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-2072.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-24661579-8	chr7	24661450	24661650	+	940.224976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_030681, exon 1 of 2)	non-coding (NR_030681, exon 1 of 2)	256.0	NR_030681	100043706.0	Mm.483825	NR_030681	ENSMUSG00000108470	Gm4598	-	predicted gene 4598	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-125058425-2	chr5	125058325	125058525	+	775.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_011424, intron 17 of 46)	GC_rich|Low_complexity|Low_complexity	54950.0	NM_028443	73121.0	Mm.296138	NM_028443	ENSMUSG00000037962	Rflna	3110032G18Rik|Fam101a|cfm|cfm2	refilin A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76082656-2	chr15	76082556	76082756	+	852.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1710.0	NM_028364	67959.0	Mm.29965	NM_028364	ENSMUSG00000002524	Puf60	2410104I19Rik|2810454F19Rik|SIAHBP1	poly-U binding splicing factor 60	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-66276133-1	chr14	66276033	66276233	+	567.0	f1_balb.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	4919.0	NM_001162366	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	1.9358731699379	1.78439934067124	1.11420278088098	1.81322537955837	1.60106707018518	1.14468483809456	2.49456447706684	2.41319482330065	0.911613065606553	0.414455211728729	0.896442802092227
Merged-chr15-90680160-4	chr15	90680054	90680254	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025815)	promoter-TSS (NM_025815)	-766.0	NM_001357979	66871.0	Mm.290991	NM_025815	ENSMUSG00000052560	Cpne8	1200003E11Rik|1500031E20Rik	copine VIII	protein-coding	5.04231683359011	4.63598816747504	4.98295872360653	4.12998368219809	5.4526532346086	4.96387986184626	4.97923379895767	4.63439988668358	0.359704182483472	0.317790783118307	0.8209499039712
Merged-chr3-51339820-4	chr3	51339721	51339921	+	945.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023502, intron 1 of 9)	CpG	823.0	NM_001356358	69257.0	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-82383492-4	chr8	82383406	82383606	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001254747, intron 1 of 7)	intron (NM_001254747, intron 1 of 7)	19080.0	NM_001254747	16168.0	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-136151730-4	chr5	136151636	136151836	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178751, intron 2 of 2)	intron (NM_178751, intron 2 of 2)	12955.0	NM_028070	72041.0	Mm.294725	NM_028070	ENSMUSG00000039754	Alkbh4	2010004B12Rik|Abj4	alkB homolog 4, lysine demethylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98709988-2	chr11	98709888	98710088	+	739.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361995, intron 18 of 25)	intron (NM_001361995, intron 18 of 25)	8675.0	NM_009971	12985.0	Mm.1238	NM_009971	ENSMUSG00000038067	Csf3	Csfg|G-CSF|MGI-IG	colony stimulating factor 3 (granulocyte)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-60722893-4	chr13	60722792	60722992	+	964.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 10 of 26)	intron (NM_134062, intron 10 of 26)	63472.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-9524494-1	chr3	9524394	9524594	+	578.0	f1_c57bl6.idr	intron (NM_133218, intron 2 of 8)	intron (NM_133218, intron 2 of 8)	85591.0	NM_133218	170753.0	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	-0.414259434926001	-0.398276868635964	0.598902187705347	-0.223220652078416	-0.41325164001992	-0.397109866632916	-0.402325922491538	-0.220114210342866	-2.92899122849788	0.227717205134813	1
Merged-chr7-44553500-4	chr7	44553387	44553587	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009473, intron 2 of 9)	intron (NM_009473, intron 2 of 9)	478.0	NM_009473	22260.0	Mm.968	NM_009473	ENSMUSG00000060601	Nr1h2	AI194859|LXR|LXRB|LXRBSV|LXRbeta|NER1|OR-1|RIP15|UR|Unr|Unr2	nuclear receptor subfamily 1, group H, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-75820215-4	chr18	75820104	75820304	+	954.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145356)	promoter-TSS (NM_145356)	26.0	NM_145356	207259.0	Mm.159332	NM_145356	ENSMUSG00000044646	Zbtb7c	B230208J24Rik|Kr-pok|Zbtb36	zinc finger and BTB domain containing 7C	protein-coding	3.79629905800312	3.58027372046616	4.03835586967268	3.81231106827662	3.82612716761982	2.86183440079677	3.73752756499489	4.00707082998222	-0.193474348740377	0.701881048177242	0.998431161219273
Merged-chr8-72324494-9	chr8	72324304	72324504	+	873.361084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	5342.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	0.751960545512609	0.821136889969707	1.05293483869261	1.96099407064778	2.43258867819807	1.80171964899759	0.804268616029446	1.22542933176675	1.33972334194011	0.330900178764367	0.83197671091297
Merged-chr5-124490870-2	chr5	124490770	124490970	+	566.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_029532, exon 2 of 2)	3' UTR (NM_029532, exon 2 of 2)	7715.0	NM_029532	76167.0	Mm.156035	NM_029532	ENSMUSG00000029402	Snrnp35	6330548G22Rik	small nuclear ribonucleoprotein 35 (U11/U12)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-32823587-4	chr12	32823480	32823680	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045032)	promoter-TSS (NR_045032)	-536.0	NR_045032	100504486.0	Mm.440246	NR_045032		Gdap10	Gdap-ps	ganglioside-induced differentiation-associated-protein 10	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-131427160-4	chr2	131427063	131427263	+	974.366699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-64699.0	NM_001177834	228608.0	Mm.136586	NM_145533	ENSMUSG00000027333	Smox	B130066H01Rik|PAO|PAOh1|SMO	spermine oxidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-68051978-2	chr11	68051878	68052078	+	629.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_018768, intron 6 of 7)	intron (NM_018768, intron 6 of 7)	85520.0	NM_018768	55943.0	Mm.3973	NM_018768	ENSMUSG00000020903	Stx8	0610007H08Rik|1110002H11Rik|4930571E13Rik|CARB	syntaxin 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-136684558-2	chr1	136684458	136684658	+	636.166626	f1_balb.idr|f1_c57bl6.idr	intron (NR_045325, intron 1 of 2)	MER2|DNA|TcMar-Tigger	929.0	NR_045325	100503460.0	Mm.30630	NR_045324	ENSMUSG00000097113	Gm19705	-	predicted gene, 19705	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-121093038-2	chr11	121092938	121093138	+	725.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11899.0	NM_145373	209588.0	Mm.69553	NM_145373	ENSMUSG00000025165	Sectm1a	BC010462	secreted and transmembrane 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128945848-2	chr10	128945748	128945948	+	720.599976	f1_balb.idr|f1_c57bl6.idr	intron (NM_008398, intron 13 of 24)	intron (NM_008398, intron 13 of 24)	12035.0	NM_001330160	16404.0	Mm.179747	NM_008398	ENSMUSG00000025348	Itga7	[a]7|alpha7	integrin alpha 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-25826747-3	chr15	25826709	25826909	+	794.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT2B1|LTR|ERVL	-16489.0	NM_001034851	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-12292361-2	chr12	12292261	12292461	+	812.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029758, intron 2 of 12)	intron (NM_029758, intron 2 of 12)	30222.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-31182523-2	chr6	31182423	31182623	+	778.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_110470, intron 1 of 2)	intron (NR_110470, intron 1 of 2)	35951.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-9901795-4	chr3	9901623	9901823	+	901.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68044.0	NM_001195031	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97150633-4	chr11	97150574	97150774	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198100)	promoter-TSS (NM_198100)	-962.0	NM_198100	73174.0	Mm.27882	NM_198100	ENSMUSG00000038517	Tbkbp1	3110043L15Rik|ProSAPiP2|SINTBAD	TBK1 binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-58372615-3	chr3	58372492	58372692	+	892.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42128.0	NM_001081229	72033.0	Mm.218409	NM_001081229	ENSMUSG00000027806	Tsc22d2	1810043J12Rik|5530402M19Rik	TSC22 domain family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-5415619-4	chr5	5415533	5415733	+	823.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35382.0	NM_011074	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-67317067-1	chr17	67316967	67317167	+	651.0	f0_balb.idr	intron (NM_001357625, intron 1 of 32)	MLT1E1A|LTR|ERVL-MaLR	37392.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	-0.841320196178833	-1.07276245709168	-1.08334320690905	-1.08971623987262	-0.835370502163856	-1.0704695644676	-1.08094795707383	-0.931706903152533	0.546406669788702	0.859150669119799	1
Merged-chr11-51833630-4	chr11	51833539	51833739	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357588, intron 5 of 12)	MIRb|SINE|MIR	23842.0	NM_199299	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-4613111-4	chr8	4612983	4613183	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145591)	promoter-TSS (NM_145591)	-87.0	NM_145591	233987.0	Mm.102799	NM_145591	ENSMUSG00000058748	Zfp958	-	zinc finger protein 958	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-33719378-1	chr18	33719278	33719478	+	679.666687	f0_c57.idr	Intergenic	Intergenic	-75514.0	NR_038152	69749.0	Mm.248787	NR_038151	ENSMUSG00000087590	Epb41l4aos	2410004N09Rik|Epb4.1l4aos	erythrocyte membrane protein band 4.1 like 4a, opposite strand	ncRNA	1.94788133596136	1.15879642335462	1.51410755631195	1.08197460032265	0.696903486362551	0.741015534550835	1.12546213689813	0.918730558998477	-2.69812654292296	0.0608603984515461	0.365132381642842
Merged-chr11-3169188-3	chr11	3169074	3169274	+	987.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030207, intron 7 of 32)	B1_Mus1|SINE|Alu	24289.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-100026868-4	chr12	100026779	100026979	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164426, intron 2 of 2)	intron (NM_001164426, intron 2 of 2)	62380.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-59234646-3	chr8	59234547	59234747	+	989.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	322892.0	NM_173411	234290.0	Mm.39244	NM_173411	ENSMUSG00000049946	BC030500	-	cDNA sequence BC030500	protein-coding	2.18861701744544	1.59958131380769	3.3660276915338	1.24063029589101	2.73065519128095	2.3644999961262	2.40773937849713	1.72694490514596	-0.0839835192064178	0.932084290673268	0.998431161219273
Merged-chr7-110878266-2	chr7	110878166	110878366	+	912.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_194464, intron 18 of 20)	intron (NM_194464, intron 18 of 20)	-15313.0	NM_053247	114332.0	Mm.396078	NM_053247	ENSMUSG00000030787	Lyve1	1200012G08Rik|Crsbp-1|Lyve-1|Xlkd1	lymphatic vessel endothelial hyaluronan receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141025632-4	chr7	141025526	141025726	+	890.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR42|LTR|ERVK	-8734.0	NM_001033632	213002.0	Mm.276440	NM_001033632	ENSMUSG00000059108	Ifitm6	A330075D07|Dspa2f|Fgls5|fragilis5	interferon induced transmembrane protein 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125385816-4	chr6	125385721	125385921	+	978.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3b|LINE|CR1	-5317.0	NM_198604	213522.0	Mm.333396	NM_198604	ENSMUSG00000038167	Plekhg6	BC026778|Gm155	pleckstrin homology domain containing, family G (with RhoGef domain) member 6	protein-coding	4.92134853425124	5.30338182319504	5.12070288747576	4.40728741350054	4.36434870023427	3.18422210092133	4.40055461322835	4.32528880360534	-1.01409534536487	0.0129749369629404	0.131088269412626
Merged-chr10-5191762-4	chr10	5191649	5191849	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001079686, intron 2 of 54)	intron (NM_001079686, intron 2 of 54)	2958.0	NM_001079686	64009.0	Mm.331626	NM_022027	ENSMUSG00000096054	Syne1	8B|A330049M09Rik|BE692247|C130039F11Rik|CPG2|KASH1|Myne1|mKIAA1756|myne-1	spectrin repeat containing, nuclear envelope 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-118459590-4	chr1	118459470	118459670	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027901)	promoter-TSS (NR_027901)	-305.0	NR_027901	68204.0	Mm.443536	NR_027901	ENSMUSG00000107722	2900060B14Rik	-	RIKEN cDNA 2900060B14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-49778346-4	chr7	49778237	49778437	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133740)	promoter-TSS (NM_133740)	-21.0	NM_133740	71974.0	Mm.33202	NM_133740	ENSMUSG00000030505	Prmt3	2010005E20Rik|2410018A17Rik|AL033309|Hrmt1l3	protein arginine N-methyltransferase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-132631022-4	chr2	132630931	132631131	+	845.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033468, intron 4 of 5)	intron (NR_033468, intron 4 of 5)	32835.0	NR_033469	767814.0	Mm.371752	NR_033468	ENSMUSG00000074783	AU019990	-	expressed sequence AU019990	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-38115010-3	chr3	38114934	38115134	+	727.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	93085.0	NR_040541	71342.0	Mm.410782	NR_040541	ENSMUSG00000106002	5430434I15Rik	-	RIKEN cDNA 5430434I15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76091229-2	chr15	76091129	76091329	+	569.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358359, intron 1 of 17)	intron (NM_001358359, intron 1 of 17)	461.0	NM_001358359	223649.0	Mm.101946	NM_144847	ENSMUSG00000075590	Nrbp2	BC011468	nuclear receptor binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-40733546-4	chr11	40733430	40733630	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013552)	promoter-TSS (NM_013552)	-93.0	NM_013552	15366.0	Mm.116997	NM_013552	ENSMUSG00000020330	Hmmr	AA386826|CD168|Rhamm	hyaluronan mediated motility receptor (RHAMM)	protein-coding	3.50921239925616	4.38774321382842	4.18316316438202	4.29258859553252	2.82922431799309	4.29241770558977	5.98237440552866	4.08694035491963	0.810941198930557	0.162417898942352	0.624046739382046
Merged-chr19-58943598-4	chr19	58943483	58943683	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001327998)	promoter-TSS (NM_001327998)	89.0	NM_001327998	73442.0	Mm.39739	NM_175199	ENSMUSG00000025092	Hspa12a	1700063D12Rik|AI118035|AI840429|AW048913|AW556406|D5Mgi40|Gm19925|mKIAA0417	heat shock protein 12A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-34236949-4	chr13	34236858	34237058	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033167, intron 3 of 10)	RSINE1|SINE|B4	73994.0	NM_001110515	69666.0	Mm.24788	NM_001101430	ENSMUSG00000071451	Psmg4	PAC-4|mPAC4	proteasome (prosome, macropain) assembly chaperone 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45720583-2	chr7	45720483	45720683	+	901.6666869999999	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033170)	promoter-TSS (NM_001033170)	-637.0	NM_001033170	73813.0	Mm.322591	NM_001033170	ENSMUSG00000054161	Fam83e	4930403C10Rik	family with sequence similarity 83, member E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-101994259-6	chr5	101994051	101994251	+	887.5166630000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 3 of 66)	intron (NM_172882, intron 3 of 66)	75770.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	1.63133017548366	1.04665408361227	2.12627295920885	2.06010773427783	0.976449234801605	2.11846587485671	1.02829292769232	2.24834866976319	-0.116009663965013	0.926572921286899	0.998431161219273
Merged-chr10-116481831-2	chr10	116481731	116481931	+	757.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8308.0	NM_021452	58802.0	Mm.440652	NM_021452	ENSMUSG00000054934	Kcnmb4	1700058G18Rik|2900045G12Rik	potassium large conductance calcium-activated channel, subfamily M, beta member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-66937606-2	chr9	66937506	66937706	+	576.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8480.0	NM_001311101	67941.0	Mm.30120	NM_026467	ENSMUSG00000036781	Rps27l	1810034D23Rik	ribosomal protein S27-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-63925503-4	chr7	63925426	63925626	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021366, intron 1 of 1)	intron (NM_021366, intron 1 of 1)	8669.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115718025-6	chr11	115717973	115718173	+	840.861084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9476.0	NM_008163	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-79889588-4	chr10	79889499	79889699	+	964.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 3 of 4)	intron (NR_038088, intron 3 of 4)	-1254.0	NM_001329541	11537.0	Mm.4407	NM_013459	ENSMUSG00000061780	Cfd	Adn|DF	complement factor D (adipsin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-108661680-4	chr6	108661588	108661788	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_104577)	promoter-TSS (NR_104577)	-754.0	NR_104577	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-77032063-1	chr10	77031963	77032163	+	545.0	f1_c57bl6.idr	promoter-TSS (NM_001199271)	promoter-TSS (NM_001199271)	-676.0	NM_001199271	20509.0	Mm.265060	NM_031196	ENSMUSG00000001436	Slc19a1	AI323572|RFC|RFC-1|RFC1	solute carrier family 19 (folate transporter), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-29967994-2	chr2	29967894	29968094	+	570.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177668, intron 1 of 55)	intron (NM_001177668, intron 1 of 55)	2434.0	NM_001309460	20740.0	Mm.204969	NM_001076554	ENSMUSG00000057738	Sptan1	2610027H02Rik|Spna-2|Spna2	spectrin alpha, non-erythrocytic 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-73411115-4	chr14	73411006	73411206	+	926.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25817.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-25194610-4	chr2	25194512	25194712	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_146115, exon 2 of 2)	exon (NM_146115, exon 2 of 2)	2201.0	NM_146115	227612.0	Mm.119747	NM_146115	ENSMUSG00000059555	Tor4a	A830007P12Rik	torsin family 4, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-60537266-4	chr3	60537156	60537356	+	985.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310514, intron 2 of 8)	intron (NM_001310514, intron 2 of 8)	36077.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-50132846-3	chr6	50132744	50132944	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361248, intron 1 of 13)	intron (NM_001361248, intron 1 of 13)	21984.0	NM_001361248	56524.0	Mm.41288	NM_008016	ENSMUSG00000038388	Mpp6	P55t|Pals2	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-151686904-4	chr1	151686812	151687012	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022018, intron 5 of 13)	intron (NM_022018, intron 5 of 13)	67815.0	NR_151474	102640772.0		NR_151473	ENSMUSG00000100594	2810414N06Rik	-	RIKEN cDNA 2810414N06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-107602944-2	chr7	107602844	107603044	+	816.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008905, intron 1 of 24)	intron (NM_008905, intron 1 of 24)	-3900.0	NM_001163557	19024.0	Mm.2817	NM_008905	ENSMUSG00000036528	Ppfibp2	Cclp1	PTPRF interacting protein, binding protein 2 (liprin beta 2)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-83649011-3	chr7	83648944	83649144	+	953.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360088, intron 15 of 18)	intron (NM_001360088, intron 15 of 18)	6451.0	NM_001360089	16170.0	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-76461383-2	chr11	76461290	76461490	+	697.833374	f1_balb.idr|f1_c57bl6.idr	exon (NM_001291186, exon 4 of 18)	exon (NM_001291186, exon 4 of 18)	7075.0	NM_001291186	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	-1.32440223303897	-1.29339468673833	-0.717877708899544	-1.31276353204239	-1.32392690786997	-1.29109028300231	-1.30162128075409	-1.31119997543009	-2.49510383040271	0.470258445164311	1
Merged-chr10-4155741-3	chr10	4155640	4155840	+	719.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172308, exon 28 of 28)	3' UTR (NM_172308, exon 28 of 28)	57380.0	NR_152620	102632515.0	Mm.416995	NR_152620	ENSMUSG00000111266	Gm30570	-	predicted gene, 30570	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-61034122-2	chr19	61034022	61034222	+	775.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_018869, intron 3 of 15)	intron (NM_018869, intron 3 of 15)	106718.0	NR_131956	414758.0	Mm.100056	NM_001001737	ENSMUSG00000074733	Zfp950	5830428H23Rik|AU016073|BC055757|Gm34518|Zfp826|mszf84	zinc finger protein 950	protein-coding	1.97889970947078	1.21569733820855	2.24896168196408	1.980132788163	1.9954656771464	1.22093457910292	2.26714093496319	1.99040283069951	0.037736123508587	0.972076791083781	0.998431161219273
Merged-chr10-20773350-4	chr10	20773245	20773445	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48267.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	4.05257003210275	4.86001538721217	5.10663044626037	4.63409034865711	4.56505517619696	2.79465212824622	4.78774140032162	3.68532417915906	-0.683812992991238	0.160436895959344	0.620275578212741
Merged-chr8-70646107-4	chr8	70646073	70646273	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_023217)	TTS (NM_023217)	13565.0	NM_023217	66522.0	Mm.154906	NM_023217	ENSMUSG00000056204	Pgpep1	2810003H13Rik|Gm19458|PAP-I|PGP|PGP-I|PGPI|Pcp	pyroglutamyl-peptidase I	protein-coding	5.1743876863913	4.9135726348472	5.85432864485456	4.76523141711179	4.69044020569492	4.38271128012557	5.5470003476456	4.78780387557174	-0.379538605906637	0.308879306102893	0.809295017856989
Merged-chr19-46869683-4	chr19	46869588	46869788	+	982.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001102471, intron 5 of 6)	intron (NM_001102471, intron 5 of 6)	92663.0	NM_029810	76952.0	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5618548-2	chr17	5618448	5618648	+	551.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	125948.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133666362-3	chr4	133666243	133666443	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356466, intron 2 of 3)	B1_Mur3|SINE|Alu	6304.0	NM_001145955	230801.0	Mm.217004	NM_178698	ENSMUSG00000043257	Pigv	B330013B03|D430024F16Rik	phosphatidylinositol glycan anchor biosynthesis, class V	protein-coding	0.45747677874668	0.038607400968146	0.195642311239341	0.180230935306018	0.273681899815791	0.0396400369007076	0.0350471428400766	0.526889017483196	0.0838320885407452	0.96649249244972	1
Merged-chr17-7864908-3	chr17	7864761	7864961	+	823.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-59887.0	NM_001081416	68655.0	Mm.379161	NM_001081416	ENSMUSG00000071984	Fndc1	1110027O12Rik|1110051A18Rik|mKIAA1866	fibronectin type III domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-117863119-3	chr6	117863019	117863219	+	741.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001360938, exon 2 of 5)	5' UTR (NM_001360938, exon 2 of 5)	238.0	NM_001001792	22685.0	Mm.249661	NM_008616	ENSMUSG00000042097	Zfp239	Mok-2|Mok2|Znf239	zinc finger protein 239	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-135767673-4	chr7	135767571	135767771	+	981.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51292.0	NM_001081117	17345.0	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-63850554-2	chr9	63850454	63850654	+	603.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-92560.0	NM_016769	17127.0	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-62542617-3	chr10	62542516	62542716	+	600.733337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15171.0	NM_001358965	19073.0	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-126919255-4	chr10	126919156	126919356	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17885.0	NM_001358970	68876.0	Mm.276769	NM_026858	ENSMUSG00000025436	Atp23	1110068E08Rik|2410012H02Rik|Xrcc6bp1	ATP23 metallopeptidase and ATP synthase assembly factor homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-93727148-3	chr1	93727058	93727258	+	702.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025920, intron 2 of 5)	intron (NM_025920, intron 2 of 5)	4768.0	NM_001310761	67026.0	Mm.272356	NM_025920	ENSMUSG00000026279	Thap4	2010320B01Rik	THAP domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-49097743-3	chr13	49097627	49097827	+	789.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290313, intron 4 of 29)	intron (NM_001290313, intron 4 of 29)	50601.0	NM_029361	75607.0	Mm.342723	NM_029361	ENSMUSG00000037989	Wnk2	1810073P09Rik|AW122246|ESTM15|X83337|mKIAA1760	WNK lysine deficient protein kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-80057946-3	chr8	80057803	80058003	+	702.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_020259, exon 1 of 13)	5' UTR (NM_020259, exon 1 of 13)	105.0	NM_020259	15245.0	Mm.254493	NM_020259	ENSMUSG00000064325	Hhip	Hhip1	Hedgehog-interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-128838460-4	chr6	128838369	128838569	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	4.5SRNA|scRNA|scRNA	-12154.0	NM_030599	80782.0	Mm.6180	NM_030599	ENSMUSG00000079298	Klrb1b	Klrb1d|Ly55b|Ly55d|NKR-P1B|NKR-P1D|Nkrp1-b|Nkrp1b|Nkrp1d|ly-55b|ly-55d	killer cell lectin-like receptor subfamily B member 1B	protein-coding	3.67238817194628	3.12431665897547	3.50150418456749	3.31970854940211	3.25158143138425	4.50866381292806	1.69953508534117	3.49723967182379	0.23428018036083	0.733772782543674	0.998431161219273
Merged-chr19-12011089-4	chr19	12010965	12011165	+	936.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25675.0	NM_146680	258675.0	Mm.271517	NM_146680	ENSMUSG00000067529	Olfr1423	MOR239-3	olfactory receptor 1423	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-88559346-3	chr5	88559253	88559453	+	804.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4891.0	NM_023054	65961.0	Mm.490364	NM_023054	ENSMUSG00000070697	Utp3	2400011K09Rik|AW557551|C87704|Crl-1|Crl1|Crlz1|Sas10	UTP3 small subunit processome component	protein-coding	-0.436785734157044	-0.668213461317239	-0.510720995171121	-0.673037410060729	-0.330346311490946	-0.667594765871219	-0.670344324377913	-0.522372807912798	0.381353883040762	0.88321853367992	1
Merged-chr3-88490845-4	chr3	88490779	88490979	+	796.575012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001002011, intron 1 of 11)	intron (NM_001002011, intron 1 of 11)	2433.0	NM_019390	16905.0	Mm.243014	NM_019390	ENSMUSG00000028063	Lmna	Dhe	lamin A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-95730353-2	chr16	95730253	95730453	+	576.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27946.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-108165106-4	chr6	108164992	108165192	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145937, intron 3 of 8)	intron (NM_145937, intron 3 of 8)	20491.0	NM_145937	58911.0	Mm.439876	NM_145937	ENSMUSG00000030101	Sumf1	AA543204|AI463102|AI851573|FGE	sulfatase modifying factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-43477779-3	chr18	43477703	43477903	+	788.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-39517.0	NM_001291455	22240.0	Mm.8180	NM_009468	ENSMUSG00000024501	Dpysl3	CRMP-4|DRP-3|TUC4|ULIP-1|Ulip|Ulip1	dihydropyrimidinase-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-29503977-2	chr19	29503877	29504077	+	750.333374	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_015567, exon 4 of 4)	non-coding (NR_015567, exon 4 of 4)	18010.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-60688386-2	chr13	60688286	60688486	+	866.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	86175.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-113228086-1	chr12	113227986	113228186	+	881.0	f1_c57bl6.idr	Intergenic	Intergenic	42183.0	NM_153776	69195.0	Mm.313244	NM_153776	ENSMUSG00000049036	Tmem121	2410008J05Rik|Hole	transmembrane protein 121	protein-coding	0.358545296595998	0.383536649069618	0.375405813054364	0.820417839375279	0.36012101062158	1.03992127521537	0.866602973126647	1.04223444832274	2.15926327275146	0.244512342620702	1
Merged-chr15-31347233-1	chr15	31347133	31347333	+	554.0	f0_balb.idr	intron (NM_027496, intron 1 of 3)	RMER19B2|LTR|ERVK	20526.0	NM_001357923	67434.0	Mm.102470	NM_026153	ENSMUSG00000022237	Ankrd33b	0610012A05Rik|3021401C12Rik|5730557B15Rik	ankyrin repeat domain 33B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-30427551-4	chr15	30427422	30427622	+	830.68335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355502, intron 2 of 21)	intron (NM_001355502, intron 2 of 21)	254929.0	NM_008729	18163.0	Mm.321648	NM_008729	ENSMUSG00000022240	Ctnnd2	Catnd2|Nprap|neurojugin	catenin (cadherin associated protein), delta 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-149303336-2	chr2	149303236	149303436	+	714.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER12|LTR|ERVK	-101913.0	NM_021405	58214.0	Mm.117117	NM_021405	ENSMUSG00000033156	Cst10	DD72	cystatin 10 (chondrocytes)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-102717208-4	chr13	102717093	102717293	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23635.0	NM_008533	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-42177172-3	chr19	42177052	42177252	+	860.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164531, intron 2 of 11)	intron (NM_001164531, intron 2 of 11)	6585.0	NM_001164531	319740.0	Mm.287359	NM_177319	ENSMUSG00000018820	Zfyve27	2210011N02Rik|9530077C24Rik|AI426636|AI593546|AI835681	zinc finger, FYVE domain containing 27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115420034-4	chr11	115419905	115420105	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183285)	promoter-TSS (NM_183285)	-86.0	NM_027862	71679.0	Mm.371641	NM_027862	ENSMUSG00000034566	Atp5h	0610009D10Rik	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit D	protein-coding	5.18494276789715	5.77024926967209	5.55595175110087	5.87645099746659	5.2222292062098	5.4826928025161	5.53726302280063	5.33524464314523	-0.251060193077918	0.365426814475778	0.861036332257394
Merged-chr12-8302404-2	chr12	8302304	8302504	+	622.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013527)	promoter-TSS (NM_013527)	-450.0	NM_013527	238057.0	Mm.271308	NM_013527	ENSMUSG00000037660	Gdf7	BMP12	growth differentiation factor 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-107113336-1	chr11	107113236	107113436	+	640.5	f0_balb.idr	intron (NM_001359590, intron 1 of 27)	intron (NM_001359590, intron 1 of 27)	18586.0	NM_176850	207165.0	Mm.343986	NM_176850	ENSMUSG00000040481	Bptf	9430093H17Rik|Falz	bromodomain PHD finger transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81088001-2	chr10	81087901	81088101	+	949.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145365, intron 8 of 11)	B4A|SINE|B4	10871.0	NM_145365	208677.0	Mm.294693	NM_145365	ENSMUSG00000035041	Creb3l3	BC010786|CREB-H|D10Bur1e	cAMP responsive element binding protein 3-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-124368351-2	chr8	124368214	124368414	+	575.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_171824)	TTS (NM_171824)	65622.0	NM_171824	209966.0	Mm.234233	NM_171824	ENSMUSG00000050751	Pgbd5	2900019M05Rik|AI854313	piggyBac transposable element derived 5	protein-coding	0.0442450993096272	-0.210008718955517	-0.398632941899795	-0.401480789064862	-0.405489733374462	-0.394091185977336	-0.397817165921964	0.115069423442334	-0.174790296193173	0.94567375076139	1
Merged-chr16-4371971-2	chr16	4371871	4372071	+	752.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009624, intron 2 of 10)	intron (NM_009624, intron 2 of 10)	48527.0	NM_001291910	11515.0	Mm.439750	NM_009624	ENSMUSG00000005580	Adcy9	AC9|ACtp10|AW125421|D16Wsu65e|mKIAA0520	adenylate cyclase 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-95723427-2	chr16	95723327	95723527	+	694.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	21020.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-12439322-4	chr19	12439210	12439410	+	913.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11405.0	NM_019540	56093.0	Mm.285849	NM_019540	ENSMUSG00000040065	Pfpl	Epcs5|Epcs50	pore forming protein-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-65781370-2	chr5	65781270	65781470	+	847.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001024917, intron 3 of 19)	ORR1F|LTR|ERVL-MaLR	17849.0	NM_001024917	333789.0	Mm.332398	NM_001024917	ENSMUSG00000037795	N4bp2	B3bp|E430014I16|Gm1791|Gm868	NEDD4 binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-17681519-1	chr12	17681419	17681619	+	549.0	f1_balb.idr	Intergenic	Intergenic	-9290.0	NM_001361645	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-29443982-1	chr17	29443882	29444082	+	1000.0	f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-47063.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	-1.56355737717652	-1.81244775989375	-1.82128546162293	-1.82854501295842	-1.83962066705452	-1.81053259306168	-1.81928479966835	-1.82724555674025	-1.28500227969968	0.715751224811686	1
Merged-chr4-148901668-2	chr4	148901568	148901768	+	773.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_027195, intron 3 of 15)	CpG	50654.0	NR_154553	108168987.0	Mm.393596	NR_154553		Gm13205	AA408865	predicted gene 13205	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-37969835-4	chr18	37969710	37969910	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175684)	promoter-TSS (NM_175684)	-79.0	NM_175684	319262.0	Mm.285060	NM_175684	ENSMUSG00000038524	Fchsd1	A030002D08Rik	FCH and double SH3 domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-108458740-4	chr4	108458647	108458847	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175472)	promoter-TSS (NM_175472)	-679.0	NM_175472	230594.0	Mm.25181	NM_175472	ENSMUSG00000034610	Zcchc11	6030404K05Rik|9230115F04Rik|PPAPD3|mKIAA0191	zinc finger, CCHC domain containing 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-27280175-4	chr8	27280081	27280281	+	898.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15864.0	NR_003107	732482.0	Mm.463248	NR_003107		Gm9731	-	Fam58a pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-96621777-2	chr10	96621677	96621877	+	811.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007569, exon 2 of 2)	3' UTR (NM_007569, exon 2 of 2)	4776.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-84190084-4	chr15	84189992	84190192	+	897.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_054088)	TTS (NM_054088)	-2141.0	NM_178614	68653.0	Mm.290725	NM_178614	ENSMUSG00000022437	Samm50	1110030L07Rik	SAMM50 sorting and assembly machinery component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-61160715-3	chr1	61160606	61160806	+	876.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	182792.0	NM_017480	54167.0	Mm.42044	NM_017480	ENSMUSG00000026009	Icos	AILIM|CCLP|CRP-1|H4|Ly115	inducible T cell co-stimulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-36578642-1	chr5	36578542	36578742	+	540.0	f1_balb.idr	intron (NM_001113362, intron 2 of 14)	RSINE1|SINE|B4	3755.0	NM_133910	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-95990956-4	chr16	95990841	95991041	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019537)	promoter-TSS (NM_019537)	19.0	NM_019537	56088.0	Mm.396248	NM_019537	ENSMUSG00000022913	Psmg1	AW552102|Dscr2	proteasome (prosome, macropain) assembly chaperone 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101863669-3	chr7	101863569	101863769	+	877.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252552, intron 4 of 6)	intron (NM_001252552, intron 4 of 6)	-6479.0	NM_001303239	14276.0	Mm.439666	NM_008035	ENSMUSG00000032725	Folr2	FBP2|FR-P3|FR-beta|Folbp-2|Folbp2	folate receptor 2 (fetal)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3053300-2	chr4	3053200	3053400	+	567.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-118783.0	NM_001167534	100312470.0	Mm.480297	NM_001167534	ENSMUSG00000115072	Vmn1r2	Gm11776	vomeronasal 1 receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45919397-3	chr7	45919336	45919536	+	688.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010129, exon 4 of 5)	exon (NM_010129, exon 4 of 5)	1413.0	NM_001146346	13732.0	Mm.20829	NM_010129	ENSMUSG00000040212	Emp3	H-4|H4|HNMP-1|MI-35|Ymp	epithelial membrane protein 3	protein-coding	-0.802593673557486	-0.793094718163527	-0.341243695287107	-0.798614554876962	-0.802002397560642	-0.791090896558683	-0.332078011335404	-0.79819523297655	0.040958530317021	0.989184000390448	1
Merged-chr1-180849055-4	chr1	180848969	180849169	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2082.0	NM_145943	208768.0	Mm.272625	NM_145943	ENSMUSG00000038806	Sde2	-	SDE2 telomere maintenance homolog (S. pombe)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-72244791-3	chr8	72244684	72244884	+	879.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007456, intron 1 of 11)	intron (NM_007456, intron 1 of 11)	4766.0	NM_007456	11767.0	Mm.290086	NM_007456	ENSMUSG00000003033	Ap1m1	AA408894|AP47|Adtm1A|Cltnm|mu1A	adaptor-related protein complex AP-1, mu subunit 1	protein-coding	2.16800488244927	1.84591942223137	3.25261143517934	2.28745776381556	2.96225097904162	2.45636786196019	3.1289194643297	3.10930862351898	0.817786448376745	0.287331402502426	0.792870783630199
Merged-chr6-28420991-4	chr6	28420892	28421092	+	902.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_028900, exon 1 of 2)	exon (NM_028900, exon 1 of 2)	732.0	NM_028900	74375.0	Mm.332950	NM_028900	ENSMUSG00000029708	Gcc1	4932417P04Rik	golgi coiled coil 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97460004-2	chr6	97459904	97460104	+	661.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346639)	promoter-TSS (NM_001346639)	-718.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-153751161-2	chr1	153751061	153751261	+	714.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011882, intron 1 of 8)	ORR1A1|LTR|ERVL-MaLR	1735.0	NM_011882	24014.0	Mm.259254	NM_011882	ENSMUSG00000066800	Rnasel	E230029I04Rik	ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-109909340-2	chr9	109909240	109909440	+	666.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	19697.0	NR_106057	102465660.0		NR_106057	ENSMUSG00000098490	Mir7089	Gm27418|mmu-mir-7089	microRNA 7089	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-58132868-2	chr15	58132768	58132968	+	560.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027435, intron 1 of 27)	intron (NM_027435, intron 1 of 27)	2214.0	NM_027435	70472.0	Mm.221758	NM_027435	ENSMUSG00000022360	Atad2	2610509G12Rik	ATPase family, AAA domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-24662059-2	chr6	24661959	24662159	+	722.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_028459, intron 1 of 10)	(ACTG)n|Simple_repeat|Simple_repeat	2936.0	NM_001167745	73178.0	Mm.1574	NM_028459	ENSMUSG00000029684	Wasl	2900021I12Rik|3110031I02Rik|N-WASP	Wiskott-Aldrich syndrome-like (human)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-97338045-3	chr15	97337933	97338133	+	900.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172293, intron 3 of 5)	RMER17C|LTR|ERVK	-90746.0	NM_001164602	105827.0	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128756456-2	chr2	128756356	128756556	+	853.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 6 of 18)	intron (NM_008587, intron 6 of 18)	57541.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-120231039-2	chr10	120230939	120231139	+	773.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_025431, intron 2 of 2)	intron (NM_025431, intron 2 of 2)	3979.0	NM_025431	66225.0	Mm.291755	NM_025431	ENSMUSG00000020224	Llph	1190005P17Rik	LLP homolog, long-term synaptic facilitation (Aplysia)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-84840706-2	chr1	84840606	84840806	+	931.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025386, intron 1 of 3)	intron (NM_025386, intron 1 of 3)	865.0	NM_025386	66153.0	Mm.381192	NM_025386	ENSMUSG00000073633	Fbxo36	0610008D19Rik|1110020F21Rik|2410002G19Rik|D1Ertd757e	F-box protein 36	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-11765668-2	chr19	11765533	11765733	+	821.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4782.0	NM_025606	94063.0	Mm.203928	NM_025606	ENSMUSG00000024683	Mrpl16	2310039D06Rik	mitochondrial ribosomal protein L16	protein-coding	-0.492919988280997	0.00374558826610222	-0.485281779473615	-0.488157410007684	-0.348548780805792	0.0129587163395171	-0.484458796283417	-0.487655408201222	0.349861389057422	0.89291078571182	1
Merged-chr18-68059232-4	chr18	68059146	68059346	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172631, intron 1 of 5)	intron (NM_172631, intron 1 of 5)	126073.0	NM_172631	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44334567-4	chr9	44334446	44334646	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010436)	promoter-TSS (NM_010436)	-169.0	NM_010436	15270.0	Mm.245931	NM_010436	ENSMUSG00000049932	H2afx	AW228881|H2A.X|H2ax|Hist5-2ax|gammaH2ax	H2A histone family, member X	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127520502-6	chr10	127520367	127520567	+	885.861084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028230, intron 2 of 11)	intron (NM_028230, intron 2 of 11)	1977.0	NM_001252316	108037.0	Mm.29890	NM_028230	ENSMUSG00000025403	Shmt2	2700043D08Rik|AA408223|AA986903|SHMT	serine hydroxymethyltransferase 2 (mitochondrial)	protein-coding	3.58015351864702	1.48309647771433	1.42917077999109	3.66988757069701	2.29527751042877	3.27510357511255	2.98292749232303	2.55836521319025	-0.236057055820368	0.795206992177908	0.998431161219273
Merged-chr18-35933130-2	chr18	35933030	35933230	+	573.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31700.0	NM_001289602	74002.0	Mm.196944	NM_028707	ENSMUSG00000024347	Psd2	6330404E20Rik|AW125584|EFA6C	pleckstrin and Sec7 domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-147941014-6	chr4	147941000	147941200	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029841, exon 1 of 3)	exon (NM_029841, exon 1 of 3)	205.0	NM_029841	77034.0	Mm.183076	NM_029841	ENSMUSG00000044496	2510039O18Rik	Kiaa2013	RIKEN cDNA 2510039O18 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-88211914-3	chr1	88211836	88212036	+	809.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_201645)	promoter-TSS (NM_201645)	-23.0	NM_201645	394436.0	Mm.300095	NM_201645	ENSMUSG00000089960	Ugt1a1	Gnt1|UDPGT 1-1|UGT1A01|Udpgt-1a|UgtBr1	UDP glucuronosyltransferase 1 family, polypeptide A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-77905399-4	chr15	77905260	77905460	+	778.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23634.0	NM_019913	56551.0	Mm.291917	NM_019913	ENSMUSG00000005354	Txn2	2510006J11Rik|AI788873|Trx2	thioredoxin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140646940-2	chr5	140646840	140647040	+	780.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001308040, intron 1 of 12)	intron (NM_001308040, intron 1 of 12)	2091.0	NM_001308040	78339.0	Mm.28947	NM_175274	ENSMUSG00000036565	Ttyh3	2900029G13Rik|AI414930|TTY3|mTTY3	tweety family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19686212-2	chr7	19686112	19686312	+	570.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-4752.0	NM_001309799	105886299.0	Mm.28394	NM_001309799	ENSMUSG00000109350	Gm44805	Apoc4-apoc2	predicted gene 44805	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-111977960-4	chr13	111977894	111978094	+	913.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	110058.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32961057-2	chr2	32960957	32961157	+	928.625	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009076)	promoter-TSS (NM_009076)	198.0	NM_199302	227738.0	Mm.248037	NM_199302	ENSMUSG00000026792	Lrsam1	-	leucine rich repeat and sterile alpha motif containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-127257203-4	chr1	127257087	127257287	+	989.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145128, intron 2 of 17)	MER77B|LTR|ERVL	52201.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-25080461-1	chr8	25080361	25080561	+	680.0	f0_balb.idr	intron (NM_031257, intron 2 of 11)	ORR1D1-int|LTR|ERVL-MaLR	21350.0	NM_031257	83436.0	Mm.261122	NM_031257	ENSMUSG00000031557	Plekha2	6430512N22Rik|AI851530|AU041791|TAPP2|W91773	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-74942786-2	chr11	74942686	74942886	+	703.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001002764, intron 6 of 18)	ID_B1|SINE|B4	16914.0	NM_001002764	103677.0	Mm.288460	NM_001002764	ENSMUSG00000038290	Smg6	AI317223|AU041178	Smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-46864576-2	chr14	46864476	46864676	+	865.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18389.0	NM_028966	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	1.96121950610766	1.9986229921274	2.03654386698239	1.97693491447638	1.88888775928115	1.37779583871252	1.11524434432334	1.30964750037997	-1.66437223125907	0.128828883399248	0.561524198240802
Merged-chr19-32637443-4	chr19	32637334	32637534	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360403, intron 3 of 11)	intron (NM_001360403, intron 3 of 11)	17429.0	NM_011864	23972.0	Mm.203916	NM_011864	ENSMUSG00000024899	Papss2	1810018P12Rik|AI159688|AtpsU2|Atpsk2|Sk2|bm	3'-phosphoadenosine 5'-phosphosulfate synthase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-34188511-5	chr13	34188452	34188652	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033167, intron 10 of 10)	intron (NM_001033167, intron 10 of 10)	25588.0	NM_001110515	69666.0	Mm.24788	NM_001101430	ENSMUSG00000071451	Psmg4	PAC-4|mPAC4	proteasome (prosome, macropain) assembly chaperone 4	protein-coding	2.01339620215731	2.60719779607149	2.76740332063754	1.23425803905523	1.90759609047519	2.6271694229185	1.52697898037378	2.00667968815797	-0.480486695971126	0.627711812747613	0.980912176761026
Merged-chr6-43349050-3	chr6	43348999	43349199	+	926.422241	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013861, intron 8 of 8)	Lx8|LINE|L1	-39545.0	NM_130869	18291.0	Mm.17715	NM_130869	ENSMUSG00000029736	Nobox	OG2|Og2x	NOBOX oogenesis homeobox	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-52567961-2	chr3	52567861	52568061	+	974.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50997.0	NR_153344	102631981.0	Mm.394225	NR_153344		Gm30173	-	predicted gene, 30173	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-21493056-3	chr13	21492954	21493154	+	932.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13470.0	NR_026798	100038371.0	Mm.133328	NR_026798		Zfp389	-	zinc finger protein 389	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84848060-5	chr8	84847917	84848117	+	892.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1086.0	NM_007591	12317.0	Mm.1971	NM_007591	ENSMUSG00000003814	Calr	CRT|Calregulin	calreticulin	protein-coding	2.8446931269944	2.19753628073913	3.00459676404651	1.89459999543165	1.98050630857659	2.76031391605226	2.86253554303086	2.36129550090771	-0.0804351780784173	0.920810711393133	0.998431161219273
Merged-chr6-33790939-3	chr6	33790840	33791040	+	883.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009148, intron 11 of 17)	intron (NM_009148, intron 11 of 17)	-238508.0	NM_028886	74354.0	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129555731-3	chr4	129555630	129555830	+	828.472229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010693, intron 7 of 11)	intron (NM_010693, intron 7 of 11)	2081.0	NR_106199	102465997.0		NR_106199	ENSMUSG00000099070	Mir8119	Gm27567|mmu-mir-8119	microRNA 8119	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-136807604-2	chr6	136807490	136807690	+	558.0	f0_c57.idr|f1_balb.idr	promoter-TSS (NM_177688)	promoter-TSS (NM_177688)	-658.0	NM_177688	232440.0	Mm.154564	NM_177688	ENSMUSG00000060032	H2afj	E130307C13	H2A histone family, member J	protein-coding	0.529007753085393	0.291579905614261	0.723263443700008	0.280854591377383	0.535589786559481	0.774925288647316	0.73264202471435	0.281669313665058	0.827813889161094	0.647897918240513	1
Merged-chr19-6308928-2	chr19	6308828	6309028	+	866.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033342, intron 1 of 36)	intron (NM_001033342, intron 1 of 36)	2471.0	NM_001033342	240505.0	Mm.329622	NM_001033342	ENSMUSG00000024769	Cdc42bpg	BC046418|MRCKgamma	CDC42 binding protein kinase gamma (DMPK-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141871638-4	chr4	141871558	141871758	+	943.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025994, intron 1 of 3)	MIR3|SINE|MIR	3262.0	NM_025994	27984.0	Mm.395598	NM_025994	ENSMUSG00000040659	Efhd2	2600015J22Rik|AA408606|D4Wsu27e	EF hand domain containing 2	protein-coding	3.97749357526251	3.93900315511154	3.65048070468096	4.56440046161475	4.23372887226467	4.69346539130495	2.74159416267969	2.46607053538354	-0.300686514694058	0.615908848858616	0.977352076822579
Merged-chr15-65995394-2	chr15	65995294	65995494	+	613.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_152923, exon 15 of 15)	exon (NM_152923, exon 15 of 15)	-18590.0	NM_001145096	654498.0	Mm.364550	NM_001145096	ENSMUSG00000072511	Hhla1	F930104E18Rik	HERV-H LTR-associating 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-72556340-4	chr5	72556240	72556440	+	953.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_133921, exon 3 of 23)	exon (NM_133921, exon 3 of 23)	3305.0	NM_001359837	100978.0	Mm.187453	NM_133921	ENSMUSG00000072889	Nfxl1	1700012H24Rik|AW538212|D430033A06Rik|DNABF|GCF|Gm1058|TCF9	nuclear transcription factor, X-box binding-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-148040231-2	chr4	148040131	148040331	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161798)	promoter-TSS (NM_001161798)	-958.0	NR_027809	17769.0	Mm.89959	NM_010840	ENSMUSG00000029009	Mthfr	AI323986	methylenetetrahydrofolate reductase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139726543-7	chr5	139726386	139726586	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_174850, intron 1 of 16)	ID_B1|SINE|B4	9847.0	NM_174850	231830.0	Mm.240510	NM_174850	ENSMUSG00000036718	Micall2	A930021H16Rik|JRAB|MICAL-L2|mFLJ00139	MICAL-like 2	protein-coding	3.7300716998451	3.31248701576756	3.90786416784536	3.30016644833076	3.39194687181965	2.80190970601957	3.59239910795499	4.03912034894081	-0.0830677388158245	0.880420990960011	0.998431161219273
Merged-chr5-53929249-2	chr5	53929149	53929349	+	734.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69274.0	NM_001081103	116873.0	Mm.265985	NM_054083	ENSMUSG00000039156	Stim2	-	stromal interaction molecule 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-36038978-2	chr12	36038878	36039078	+	643.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025359, intron 1 of 5)	B1_Mus2|SINE|Alu	3500.0	NM_025359	66109.0	Mm.254663	NM_025359	ENSMUSG00000020577	Tspan13	1100001I23Rik|NET-6|Tm4sf13	tetraspanin 13	protein-coding	1.2368895470713	1.85484076344106	1.48946585722955	0.658187284440295	0.641671561130929	1.57080077289136	0.672888795561781	0.660202429681207	-1.61397649766005	0.304159356015845	0.805823042870184
Merged-chr13-49652920-4	chr13	49652813	49653013	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_073167)	promoter-TSS (NR_073167)	-165.0	NM_001271397	70930.0	Mm.258915	NM_001081350	ENSMUSG00000021392	Nol8	4921532D18Rik|5730412B09Rik	nucleolar protein 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-33231603-3	chr14	33231488	33231688	+	648.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153800, intron 2 of 10)	intron (NM_153800, intron 2 of 10)	14765.0	NM_153800	239027.0	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-62760404-4	chr5	62760309	62760509	+	945.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178407, intron 1 of 32)	RSINE1|SINE|B4	5768.0	NM_178407	212285.0	Mm.244403	NM_178407	ENSMUSG00000037999	Arap2	Centd1|Gm148|mKIAA0580	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-28460753-3	chr6	28460669	28460869	+	600.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11429.0	NM_001159925	18506.0	Mm.8026	NM_011038	ENSMUSG00000029706	Pax4	Pax-4	paired box 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-20945665-1	chr17	20945565	20945765	+	1000.0	f0_c57.idr	intron (NM_016891, intron 1 of 14)	CpG	211.0	NM_016891	51792.0	Mm.294138	NM_016891	ENSMUSG00000007564	Ppp2r1a	6330556D22Rik|PP2A|PR65	protein phosphatase 2, regulatory subunit A, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-97737333-3	chr3	97737245	97737445	+	940.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039376, intron 24 of 46)	intron (NM_001039376, intron 24 of 46)	30669.0	NM_178080	83679.0	Mm.129840	NM_031401	ENSMUSG00000038170	Pde4dip	4732458A06Rik|9430063L05Rik|C87016|D130016K21Rik|D3Bwg1078e|Usmg4|mKIAA0454	phosphodiesterase 4D interacting protein (myomegalin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-43103219-1	chr5	43103119	43103319	+	746.0	f0_balb.idr	Intergenic	B4A|SINE|B4	-130244.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	1.34470475816047	1.13514111527751	1.47996351607356	0.81873858778842	1.61529108873786	2.71891317213774	0.842567809453244	1.43944043256004	1.89376571185395	0.129984883970781	0.564921023139857
Merged-chr5-151369581-2	chr5	151369481	151369681	+	916.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045700, intron 1 of 3)	intron (NR_045700, intron 1 of 3)	906.0	NR_045699	625175.0	Mm.443286	NR_045699	ENSMUSG00000097321	1700028E10Rik	A630054D14|Gm6561	RIKEN cDNA 1700028E10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-81078198-4	chr5	81078094	81078294	+	875.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198702, intron 2 of 27)	ORR1F|LTR|ERVL-MaLR	56601.0	NM_198702	319387.0	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-173599226-1	chr1	173599126	173599326	+	565.0	f0_c57.idr	promoter-TSS (NM_001177349)	promoter-TSS (NM_001177349)	48.0	NM_001177349	623121.0	Mm.138449	NM_001033384	ENSMUSG00000073491	Ifi213	E030037K03Rik|E430029J22Rik|Pydc4|Pyr-A	interferon activated gene 213	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-126250611-3	chr4	126250481	126250681	+	809.650024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145970, intron 1 of 16)	intron (NM_001145970, intron 1 of 16)	5738.0	NM_144941	245877.0	Mm.266716	NM_144941	ENSMUSG00000028849	Map7d1	AV028413|BC019977|Mtap7d1|Parcc1|Rprc1|mKIAA1187	MAP7 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120599502-1	chr11	120599402	120599602	+	732.0	f1_balb.idr	intron (NM_001038230, intron 2 of 2)	B1_Mus1|SINE|Alu	970.0	NM_001038230	66156.0	Mm.21645	NM_025389	ENSMUSG00000025135	Anapc11	1110011I19Rik|R75218	anaphase promoting complex subunit 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-66826503-4	chr4	66826387	66826587	+	857.974976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1064.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	1.56581381594266	2.76809775943898	1.22358825554722	2.42170698361726	1.38835495972028	1.95858068597982	2.69284194995929	2.33777823781011	0.0765859981953437	0.940513020810227	0.998431161219273
Merged-chr11-48988353-3	chr11	48988265	48988465	+	724.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011579, intron 1 of 1)	intron (NM_011579, intron 1 of 1)	3881.0	NM_011579	21822.0	Mm.15793	NM_011579	ENSMUSG00000078922	Tgtp1	Gtp2|Irgb6|Mg21|Tgtp	T cell specific GTPase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-69085676-4	chr17	69085584	69085784	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355732, intron 1 of 21)	intron (NM_001355732, intron 1 of 21)	10007.0	NM_001355732	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81297295-4	chr10	81297182	81297382	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293647, intron 1 of 17)	intron (NM_001293647, intron 1 of 17)	4319.0	NM_001146687	18717.0	Mm.24222	NM_008844	ENSMUSG00000034902	Pip5k1c	AI115456|AI835305|Pip5kIgamma	phosphatidylinositol-4-phosphate 5-kinase, type 1 gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-120431681-2	chr2	120431581	120431781	+	959.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172672, intron 10 of 23)	RSINE1|SINE|B4	-27565.0	NM_001110496	211499.0	Mm.260712	NM_173734	ENSMUSG00000033808	Tmem87a	A930025J12Rik	transmembrane protein 87A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120569676-2	chr8	120569576	120569776	+	881.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145896, intron 8 of 15)	intron (NM_001145896, intron 8 of 15)	19399.0	NM_178856	272551.0	Mm.275910	NM_178856	ENSMUSG00000031821	Gins2	2210013I18Rik|4833427B12Rik|AI323585|Pfs2	GINS complex subunit 2 (Psf2 homolog)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10580945-3	chr19	10580853	10581053	+	824.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362431, intron 3 of 7)	intron (NM_001362431, intron 3 of 7)	3505.0	NM_001282067	225912.0	Mm.252701	NM_201351	ENSMUSG00000034445	Cyb561a3	2310004G04Rik|Cybasc3|Lcytb	cytochrome b561 family, member A3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-51852180-2	chr13	51852080	51852280	+	671.416687	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	5505.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-126950637-2	chr2	126950537	126950737	+	981.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17402.0	NM_023220	66552.0	Mm.269928	NM_023220	ENSMUSG00000027366	Sppl2a	2010106G01Rik|C130089K23Rik	signal peptide peptidase like 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-120240386-2	chr14	120240286	120240486	+	619.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35283.0	NM_207515	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-160148929-2	chr2	160148829	160149029	+	630.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	132276.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-68598163-4	chr14	68598070	68598270	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16098.0	NM_021475	58860.0	Mm.36742	NM_021475	ENSMUSG00000022057	Adamdec1	2210414L24Rik|AI574231|Dcsn	ADAM-like, decysin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-73844519-4	chr18	73844389	73844589	+	695.491699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14896.0	NM_027741	71263.0	Mm.126220	NM_027741	ENSMUSG00000064036	Mro	4930507C04Rik|4933435E20Rik	maestro	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-30641916-4	chr14	30641802	30642002	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12473.0	NM_177815	328370.0	Mm.259657	NM_177815	ENSMUSG00000052395	Rft1	D930025H04	RFT1 homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-63098266-1	chr13	63098166	63098366	+	893.0	f0_balb.idr	intron (NM_001289926, intron 5 of 15)	intron (NM_001289926, intron 5 of 15)	133373.0	NM_001289924	72061.0	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	1.99777409185612	2.26365795177069	1.04271982184707	1.82490113521579	1.74160791804173	1.0680067528473	1.28019095846099	1.83489695690276	-1.00357207559468	0.39708843212266	0.883497485228651
Merged-chr1-131080126-2	chr1	131080062	131080262	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008551, intron 1 of 9)	intron (NM_008551, intron 1 of 9)	17681.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	0.215851642650842	1.36141216849686	0.235372170410594	0.228106088574501	0.393889968511435	0.246745973826148	0.905682090062106	0.592405857459719	-0.397399614357977	0.832154642327059	1
Merged-chr11-100329286-2	chr11	100329186	100329386	+	596.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-5121.0	NM_010257	14459.0	Mm.4767	NM_010257	ENSMUSG00000017165	Gast	GAS	gastrin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-21468202-4	chr3	21468082	21468282	+	821.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Arthur1|DNA|hAT-Tip100	-608470.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-19923143-2	chr11	19923043	19923243	+	613.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1299.0	NM_033523	114716.0	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-129355645-2	chr10	129355545	129355745	+	720.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4A|LINE|L1	5080.0	NM_001011797	257985.0	Mm.422962	NM_001011797	ENSMUSG00000095075	Olfr782	MOR110-8	olfactory receptor 782	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-108011260-3	chr11	108011160	108011360	+	925.2777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011101, intron 8 of 16)	intron (NM_011101, intron 8 of 16)	14412.0	NR_106082	102465705.0		NR_106082	ENSMUSG00000098989	Mir7223	Gm28009|mmu-mir-7223	microRNA 7223	ncRNA	2.33990131112311	2.36785293309408	2.54588268448906	1.3906753523474	1.91641641204793	1.21388221860016	1.63557550363486	1.75072552357912	-1.54905548062429	0.131809826891361	0.568051114598616
Merged-chr9-77914218-2	chr9	77914118	77914318	+	545.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-3147.0	NM_134255	68801.0	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-70695251-4	chr12	70695146	70695346	+	925.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-130268.0	NM_028127	319710.0	Mm.2962	NM_028127	ENSMUSG00000048285	Frmd6	2610019M19Rik|4930488L10Rik|AW212977|Willin	FERM domain containing 6	protein-coding	2.74531806710531	2.75581153447302	2.39020005122673	3.60986295657442	2.21751789103666	3.28037340552804	2.68280088626198	2.17424617191951	-0.55786954367898	0.456334695050615	0.919264728457769
Merged-chr8-26104685-4	chr8	26104583	26104783	+	991.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207659, intron 2 of 21)	intron (NM_207659, intron 2 of 21)	14541.0	NM_207659	320191.0	Mm.334464	NM_207659	ENSMUSG00000037234	Hook3	5830454D03Rik|AI317159|E330005F07Rik	hook microtubule tethering protein 3	protein-coding	1.05504041085978	2.22754366315812	1.32603434165426	1.57799939969779	0.860108546047734	0.922502344179362	1.98324415500548	1.58714660970699	-0.590999363495502	0.645055582617287	0.983701068654072
Merged-chr11-53794993-4	chr11	53794908	53795108	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033332, intron 3 of 3)	intron (NR_033332, intron 3 of 3)	24535.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-21171797-1	chr13	21171697	21171897	+	667.0	f1_balb.idr	Intergenic	Intergenic	-8134.0	NM_009054	19720.0	Mm.314056	NM_009054	ENSMUSG00000021326	Trim27	AW538890|Gm19403|Rfp	tripartite motif-containing 27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80302681-1	chr10	80302581	80302781	+	540.0	f1_balb.idr	intron (NM_011789, intron 3 of 13)	intron (NM_011789, intron 3 of 13)	861.0	NM_011789	23805.0	Mm.57247	NM_011789	ENSMUSG00000020135	Apc2	AI852447|APCL|R75424	adenomatosis polyposis coli 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-45766705-4	chr17	45766606	45766806	+	946.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152153, intron 2 of 4)	intron (NR_152153, intron 2 of 4)	32200.0	NR_152153	433111.0	Mm.213441	NR_152153	ENSMUSG00000097727	F630040K05Rik	-	RIKEN cDNA F630040K05 gene	ncRNA	2.13891017953438	3.54208214673197	3.09904928144608	2.80999018208533	2.57365559081083	2.75948367389323	3.37894937873441	3.60378817407886	0.279099444154596	0.685343533973179	0.996533206832645
Merged-chr6-57542197-4	chr6	57542096	57542296	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6B|LTR|ERVK	-6770.0	NM_175523	243382.0	Mm.396893	NM_175523	ENSMUSG00000037826	Ppm1k	2900063A19Rik|A930026L03Rik|PP2Cm	protein phosphatase 1K (PP2C domain containing)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-46390670-4	chr4	46390560	46390760	+	975.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1223.0	NM_001347095	74753.0	Mm.45973	NM_029086	ENSMUSG00000028331	Trmo	5830415F09Rik|AV014846|Nap1	tRNA methyltransferase O	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-17406723-4	chr16	17406652	17406852	+	746.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001001983)	promoter-TSS (NM_001001983)	-438.0	NM_001001983	224020.0	Mm.5718	NM_001001983	ENSMUSG00000041720	Pi4ka	Pik4ca	phosphatidylinositol 4-kinase alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55884940-4	chr14	55884840	55885040	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019820)	promoter-TSS (NM_019820)	-2.0	NM_027143	219094.0	Mm.37592	NM_027143	ENSMUSG00000047153	Khnyn	6330555F21|9130227C08Rik|AI605259|Kiaa0323|mKIAA0323	KH and NYN domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-88893712-2	chr6	88893612	88893812	+	850.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008564, intron 2 of 15)	intron (NM_008564, intron 2 of 15)	5068.0	NM_008564	17216.0	Mm.16711	NM_008564	ENSMUSG00000002870	Mcm2	AA959861|AW476101|BM28|CDCL1|Mcmd2|mKIAA0030	minichromosome maintenance complex component 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-66221409-4	chr17	66221308	66221508	+	869.224976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	97888.0	NM_001348292	320209.0	Mm.259605	NM_001003919	ENSMUSG00000035842	Ddx11	4732462I11Rik|CHL1|CHLR1|KRG2|essa15a	DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30216983-4	chr7	30216878	30217078	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14413.0	NM_001360648	66411.0	Mm.27947	NM_025548	ENSMUSG00000006095	Tbcb	2410007D12Rik|AU041393|CG22|CKAPI|Ckap1	tubulin folding cofactor B	protein-coding	5.6826064219238	5.42010264890362	5.72831818620674	5.9410320534877	5.46226777153577	4.41799206832358	4.57861685086485	5.05272361391305	-0.864346579934989	0.00598277886498318	0.0763631710873066
Merged-chr13-54789236-4	chr13	54789121	54789321	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028841)	promoter-TSS (NM_028841)	-184.0	NM_028841	74257.0	Mm.32883	NM_028841	ENSMUSG00000025875	Tspan17	2210021G21Rik|AI047581|Fbxo23|Tm4sf17	tetraspanin 17	protein-coding	5.7476720049484	4.96607042510976	5.35645402640816	6.15102696629749	6.19584116362622	6.09002826503415	6.27524797103269	6.055182415513	0.577617036721868	0.0329260683461398	0.253668857887619
Merged-chr5-59365019-2	chr5	59364919	59365119	+	556.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	620983.0	NR_040683	71057.0	Mm.50817	NR_040682	ENSMUSG00000106013	4933402J10Rik	-	RIKEN cDNA 4933402J10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76721369-2	chr15	76721264	76721464	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_176828)	TTS (NM_176828)	809.0	NM_198119	378937.0	Mm.289666	NM_198119	ENSMUSG00000033707	Lrrc24	6430402H13Rik	leucine rich repeat containing 24	protein-coding	-0.989786300109673	-1.23260475256842	-1.24307021483566	-1.2516668571423	-1.25947646807559	-0.900997845241277	-1.24070106357476	-1.25012806227958	0.315345637906027	0.925948014407195	1
Merged-chr6-85306732-3	chr6	85306632	85306832	+	895.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178639, intron 2 of 13)	MTD|LTR|ERVL-MaLR	26690.0	NM_178639	94282.0	Mm.121485	NM_178639	ENSMUSG00000033720	Sfxn5	C230001H08Rik	sideroflexin 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-70355086-1	chr16	70354986	70355186	+	720.0	f0_balb.idr	intron (NM_028803, intron 1 of 15)	Lx8|LINE|L1	41137.0	NM_028803	74185.0	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	0.795180043207799	1.68999485861745	1.04422047896707	1.76345061976829	1.38812773736181	1.08328358397026	1.74451913762331	0.817908075938649	-0.300130501864603	0.825632850535355	0.998431161219273
Merged-chr15-98483584-2	chr15	98483484	98483684	+	719.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010679)	promoter-TSS (NM_010679)	-901.0	NM_010679	16770.0	Mm.5074	NM_010679	ENSMUSG00000022991	Lalba	AW208827|Lyzg	lactalbumin, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-31110444-4	chr17	31110332	31110532	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009593, intron 11 of 14)	ORR1E|LTR|ERVL-MaLR	19179.0	NM_011575	21786.0	Mm.4641	NM_011575	ENSMUSG00000024029	Tff3	ITF|mITF	trefoil factor 3, intestinal	protein-coding	6.48427515141696	6.53637683156112	5.90827837977304	6.17789172486827	6.60012274565689	6.63694478254635	6.11664093952902	6.42046438792095	0.17203255927529	0.438921571875837	0.909130714404946
Merged-chr15-29151043-2	chr15	29150943	29151143	+	879.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2B2|LINE|L1	562361.0	NR_039542	100628607.0		NR_039542	ENSMUSG00000092639	Mir3964	mmu-mir-3964|mu-mir-3964	microRNA 3964	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-12208563-2	chr15	12208463	12208663	+	587.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356498, intron 1 of 15)	intron (NM_001356498, intron 1 of 15)	3535.0	NM_172958	268783.0	Mm.54460	NM_172958	ENSMUSG00000039458	Mtmr12	3Pap|4932703C11|C730015A02Rik|Pip3ap|mKIAA1682	myotubularin related protein 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-17617568-2	chr17	17617464	17617664	+	792.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_172827, intron 1 of 17)	intron (NM_172827, intron 1 of 17)	6925.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	2.96799436297062	2.47875984271301	2.39664248376187	2.69433475027196	2.76295228872242	2.99226826973338	3.30264214996034	2.1888703272943	0.412636368522297	0.567488288994484	0.962562732139494
Merged-chr9-47688799-3	chr9	47688698	47688898	+	740.033325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	129410.0	NR_046048	100038460.0	Mm.447649	NR_046048		Gm10677	-	predicted gene 10677	ncRNA	2.75916665120114	1.3358156490042	1.02291818148913	0.999176255501667	2.37276826627505	2.0799738966126	1.02953994920019	2.34589752447545	0.596193712620466	0.633631017452111	0.982417279970648
Merged-chr2-167920113-4	chr2	167920034	167920234	+	889.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12193.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-55530343-4	chr4	55530242	55530442	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010637, exon 3 of 5)	exon (NM_010637, exon 3 of 5)	2133.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-15774121-4	chr17	15774006	15774206	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52480.0	NM_178615	68799.0	Mm.293466	NM_178615	ENSMUSG00000048027	Rgmb	1110059F19Rik|DRAGON	repulsive guidance molecule family member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-31881689-2	chr5	31881589	31881789	+	790.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144541, intron 6 of 11)	intron (NM_144541, intron 6 of 11)	183639.0	NM_144541	107976.0	Mm.482126	NM_144541	ENSMUSG00000052139	Babam2	6030405P19Rik|AI429776|B830038C02Rik|Bre	BRISC and BRCA1 A complex member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-32572705-3	chr14	32572608	32572808	+	723.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081221, intron 18 of 20)	intron (NM_001081221, intron 18 of 20)	-26700.0	NM_001347590	107751.0	Mm.119274	NM_001001796	ENSMUSG00000041730	Prrxl1	Drg11|Drgx	paired related homeobox protein-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-52901046-4	chr2	52900937	52901137	+	775.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	Lx8|LINE|L1	43169.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-75742519-2	chr7	75742419	75742619	+	551.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 30 of 36)	intron (NM_029332, intron 30 of 36)	-105819.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-54086156-2	chr11	54086056	54086256	+	564.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MEg|LINE|L1	-14768.0	NM_001136076	18452.0	Mm.3705	NM_011031	ENSMUSG00000018906	P4ha2	AA407196|C76437|P4hl	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83029412-2	chr6	83029312	83029512	+	580.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_033079, intron 9 of 9)	intron (NM_033079, intron 9 of 9)	4059.0	NM_010070	13448.0	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-87039478-4	chr11	87039366	87039566	+	991.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025638, intron 7 of 9)	B4A|SINE|B4	34671.0	NM_025638	66569.0	Mm.281887	NM_025638	ENSMUSG00000061666	Gdpd1	2610020H15Rik	glycerophosphodiester phosphodiesterase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70914538-3	chr14	70914468	70914668	+	907.305542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302094, intron 2 of 7)	intron (NM_001302094, intron 2 of 7)	24461.0	NM_001302094	14586.0	Mm.32619	NM_008115	ENSMUSG00000022103	Gfra2	-	glial cell line derived neurotrophic factor family receptor alpha 2	protein-coding	2.9277693353999	2.22804914821077	2.56273306310415	1.93068550090421	2.88627310067635	2.66876796549215	2.46160092100054	2.61069009886294	0.394742915093296	0.608643504958482	0.974576632476413
Merged-chr8-107002703-2	chr8	107002603	107002803	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009229, intron 5 of 6)	intron (NM_009229, intron 5 of 6)	-28623.0	NM_126165	116733.0	Mm.236004	NM_126165	ENSMUSG00000031913	Vps4a	4930589C15Rik|AI325971|AW553189	vacuolar protein sorting 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-45686309-4	chr17	45686190	45686390	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198167)	promoter-TSS (NM_198167)	-59.0	NM_026732	68463.0	Mm.379158	NM_026732	ENSMUSG00000023939	Mrpl14	1110006I11Rik|AI846816|MRP-L32|Rpml32	mitochondrial ribosomal protein L14	protein-coding	4.59985816612216	4.36244827721402	4.90583573270345	4.89256108899041	4.63433776054208	4.83322900850328	4.25197135494459	4.76682175740453	-0.0894117183487226	0.803187041000731	0.998431161219273
Merged-chr14-62052738-2	chr14	62052638	62052838	+	556.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	240241.0	NM_173419	239133.0	Mm.127330	NM_173419	ENSMUSG00000048281	Dleu7	BC038059	deleted in lymphocytic leukemia, 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-46885520-2	chr14	46885420	46885620	+	787.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037221, intron 2 of 12)	intron (NM_001037221, intron 2 of 12)	2555.0	NM_001037221	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-134129662-4	chr4	134129561	134129761	+	690.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080559)	promoter-TSS (NM_080559)	-908.0	NM_080559	73723.0	Mm.22240	NM_080559	ENSMUSG00000028843	Sh3bgrl3	1110004L05Rik|AU022188	SH3 domain binding glutamic acid-rich protein-like 3	protein-coding	1.65713595691003	2.2742526037085	1.71194480042176	1.76376966939153	0.799771561269221	1.12435571485881	0.843113598257441	0.825660055167714	-4.48415102907318	0.00169311632908407	0.0296699265574742
Merged-chr12-33156502-4	chr12	33156389	33156589	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028139, intron 2 of 3)	ID4_|SINE|ID	8803.0	NM_028139	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	1.69428013793574	2.02666716428937	1.72548594627075	1.98773545972029	1.34182211170967	1.05112189436808	1.86079724566925	1.01528010246754	-1.63694053012316	0.165343388050352	0.630328292001101
Merged-chr1-182868626-2	chr1	182868526	182868726	+	754.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356462, intron 5 of 8)	intron (NM_001356462, intron 5 of 8)	-86162.0	NM_016928	53791.0	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-51156814-4	chr3	51156731	51156931	+	899.962524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-67616.0	NM_009834	12457.0	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-141058946-2	chr5	141058846	141059046	+	699.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-58350.0	NM_175362	108723.0	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-79555456-2	chr14	79555356	79555556	+	621.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_007920, intron 2 of 8)	(A)n|Simple_repeat|Simple_repeat	-32204.0	NM_026474	67955.0	Mm.18972	NM_026474	ENSMUSG00000022024	Sugt1	2410174K12Rik|SGT1	SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-125305407-3	chr5	125305302	125305502	+	991.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205083, intron 1 of 10)	intron (NM_001205083, intron 1 of 10)	35692.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-127398266-4	chr2	127398162	127398362	+	967.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26937.0	NM_001081089	215456.0	Mm.440454	NM_001081089	ENSMUSG00000046338	Gpat2	A530057A03Rik|Gm116|xGPAT1	glycerol-3-phosphate acyltransferase 2, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-89422767-4	chr6	89422676	89422876	+	947.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167736, intron 4 of 6)	intron (NM_001167736, intron 4 of 6)	-60163.0	NM_008881	18844.0	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-25058891-4	chr10	25058789	25058989	+	660.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-131419.0	NM_007482	11846.0	Mm.154144	NM_007482	ENSMUSG00000019987	Arg1	AI|AI256583|Arg-1|PGIF	arginase, liver	protein-coding	-1.17367364971587	-1.14665061133654	-1.15856004380685	-1.16834280623128	-1.17310571790619	-1.14406978763884	-0.42938571406771	-1.16659169643457	2.89727187181404	0.396361616615464	1
Merged-chr1-86066946-3	chr1	86066831	86067031	+	846.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027357, intron 1 of 24)	intron (NM_027357, intron 1 of 24)	2312.0	NM_027357	70247.0	Mm.280013	NM_027357	ENSMUSG00000026229	Psmd1	2410026J11Rik|P112|S1	proteasome (prosome, macropain) 26S subunit, non-ATPase, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-28007855-3	chr3	28007764	28007964	+	735.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008875, intron 1 of 25)	intron (NM_008875, intron 1 of 25)	23693.0	NM_008875	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135312947-2	chr4	135312847	135313047	+	819.583313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40187.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-23310205-2	chr11	23310105	23310305	+	611.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001190401, intron 1 of 79)	intron (NM_001190401, intron 1 of 79)	3310.0	NM_001190401	17847.0	Mm.119155	NM_001190401	ENSMUSG00000056342	Usp34	A530081C03Rik|Murr2	ubiquitin specific peptidase 34	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-23606896-2	chr16	23606796	23606996	+	564.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20B3A_MM|LTR|ERVK	-3023.0	NM_023386	67775.0	Mm.475107	NM_023386	ENSMUSG00000033355	Rtp4	5830458K16Rik|Ifrg28	receptor transporter protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-53630117-4	chr10	53629986	53630186	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027830, exon 2 of 14)	exon (NM_027830, exon 2 of 14)	353.0	NM_027830	71567.0	Mm.278221	NM_027830	ENSMUSG00000058298	Mcm9	9030408O17Rik|Gm235|Mcmdc1	minichromosome maintenance 9 homologous recombination repair factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-112396759-4	chr13	112396642	112396842	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-67328.0	NM_010560	16195.0	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-55783219-2	chr3	55783119	55783319	+	980.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_010750, exon 1 of 1)	exon (NM_010750, exon 1 of 1)	709.0	NM_010750	17116.0	Mm.440209	NM_010750	ENSMUSG00000056947	Mab21l1	AW047968	mab-21-like 1 (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-4290660-2	chr2	4290560	4290760	+	915.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172475, intron 1 of 22)	MTD|LTR|ERVL-MaLR	-110316.0	NM_001177843	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-103240873-4	chr15	103240783	103240983	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039129, intron 1 of 10)	intron (NM_001039129, intron 1 of 10)	429.0	NR_002883	434858.0	Mm.391346	NR_002883		Gm5643	EG434858	heterogeneous nuclear ribonucleoprotein A1 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-62439859-3	chr4	62439758	62439958	+	825.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5132.0	NM_153504	76072.0	Mm.169565	NM_153504	ENSMUSG00000063851	Rnf183	5830442J12Rik	ring finger protein 183	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-21452787-4	chr11	21452693	21452893	+	913.341675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3B|LINE|L1	58387.0	NR_028259	237694.0	Mm.72926	NM_172792	ENSMUSG00000078962	4932414J04Rik	-	RIKEN cDNA 4932414J04 gene	ncRNA	3.53586768042685	4.3994510564253	3.76693249139417	4.14194904001158	4.2240038630045	3.7466979941589	5.49672677415046	4.75767597444448	0.930388827806346	0.050711733141848	0.327931107957343
Merged-chr15-76342070-2	chr15	76341928	76342128	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1495.0	NM_025567	66445.0	Mm.29196	NM_025567	ENSMUSG00000022551	Cyc1	2610002H19Rik|AA408921|Cyct1	cytochrome c-1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-26836738-4	chr10	26836702	26836902	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176837, intron 1 of 14)	intron (NM_176837, intron 1 of 14)	64290.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-95688341-4	chr4	95688229	95688429	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029347, intron 5 of 10)	intron (NM_029347, intron 5 of 10)	108908.0	NM_029347	75578.0	Mm.276098	NM_029347	ENSMUSG00000028573	Fggy	2310009E04Rik	FGGY carbohydrate kinase domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-25727007-3	chr18	25726895	25727095	+	749.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362322, intron 1 of 12)	intron (NM_001362322, intron 1 of 12)	26988.0	NM_001146295	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-64063753-2	chr14	64063653	64063853	+	612.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21657.0	NM_001081063	71037.0	Mm.19977	NM_001081063	ENSMUSG00000034623	Prss55	4933401F05Rik	protease, serine 55	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-34370539-4	chr5	34370429	34370629	+	923.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001243123, intron 1 of 20)	CpG	596.0	NM_001243123	231128.0	Mm.286885	NM_001030306	ENSMUSG00000037210	Fam193a	-	family with sequence similarity 193, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-86879239-2	chr8	86879139	86879339	+	554.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030563, intron 1 of 6)	intron (NM_030563, intron 1 of 6)	6019.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	0.00338266867172315	-0.515089266520814	-0.518401748584136	-0.366482360676548	-0.164542897372824	-0.514340218083426	-0.51767263403461	-0.520501974296242	-0.971730116072357	0.714994612413914	1
Merged-chr5-120116962-2	chr5	120116862	120117062	+	985.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028762, intron 1 of 23)	MTD|LTR|ERVL-MaLR	449.0	NM_028762	74111.0	Mm.41022	NM_028762	ENSMUSG00000029594	Rbm19	1200009A02Rik|AV302714|NPO	RNA binding motif protein 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-166844763-3	chr1	166844641	166844841	+	683.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	154989.0	NR_037988	100503962.0	Mm.216842	NR_037988	ENSMUSG00000102548	Gm16701	-	predicted gene, 16701	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-54449031-4	chr1	54448900	54449100	+	965.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9974.0	NM_001033194	98488.0	Mm.25856	NM_001033194	ENSMUSG00000041303	Gtf3c3	TF3C-gamma|TFIIIC102	general transcription factor IIIC, polypeptide 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-71863335-3	chr11	71863239	71863439	+	934.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	76783.0	NR_045942	73816.0	Mm.390391	NR_045942	ENSMUSG00000085528	4930401O10Rik	-	RIKEN cDNA 4930401O10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-118449687-2	chr1	118449587	118449787	+	641.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359330, intron 2 of 39)	intron (NM_001359330, intron 2 of 39)	9578.0	NR_027901	68204.0	Mm.443536	NR_027901	ENSMUSG00000107722	2900060B14Rik	-	RIKEN cDNA 2900060B14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-138928959-4	chr1	138928858	138929058	+	978.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34751.0	NM_001166501	329260.0	Mm.337604	NM_181347	ENSMUSG00000056268	Dennd1b	4632404N19Rik|4930467M19Rik|6820401H01Rik|F730008N07Rik	DENN/MADD domain containing 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-57176487-4	chr16	57176396	57176596	+	939.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026254, intron 15 of 17)	intron (NM_026254, intron 15 of 17)	-9164.0	NM_023175	52633.0	Mm.383203	NM_023175	ENSMUSG00000022751	Nit2	1190017B19Rik|D16Ertd502e	nitrilase family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-184846998-2	chr1	184846898	184847098	+	548.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1151.0	NM_133684	67247.0	Mm.177724	NM_133684	ENSMUSG00000073481	Marc2	2810484M10Rik|Mosc2|mARC1	mitochondrial amidoxime reducing component 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19361164-4	chr7	19361053	19361253	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001010836)	promoter-TSS (NM_001010836)	-63.0	NM_001010836	333654.0	Mm.333640	NM_001010836	ENSMUSG00000040734	Ppp1r13l	AV260376|IASPP|Nkip1|wa3	protein phosphatase 1, regulatory (inhibitor) subunit 13 like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-117152887-3	chr13	117152805	117153005	+	833.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	22880.0	NR_046023	623312.0	Mm.131279	NR_046023	ENSMUSG00000114792	Gm6416	-	predicted gene 6416	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-77589434-2	chr10	77589334	77589534	+	588.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145925, intron 2 of 5)	intron (NM_145925, intron 2 of 5)	7779.0	NM_145925	108705.0	Mm.28853	NM_145925	ENSMUSG00000009291	Pttg1ip	1810010L20Rik|AI314311|AU018448|C79540|PBF	pituitary tumor-transforming 1 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-48944973-2	chr7	48944873	48945073	+	711.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-14100.0	NM_001111016	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-100651151-4	chr13	100651075	100651275	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001283011)	promoter-TSS (NM_001283011)	-114.0	NM_001283011	19356.0	Mm.248489	NM_011233	ENSMUSG00000021635	Rad17	MmRad24	RAD17 checkpoint clamp loader component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71469724-1	chr8	71469624	71469824	+	663.0	f0_balb.idr	intron (NM_001294259, intron 1 of 3)	intron (NM_001294259, intron 1 of 3)	530.0	NR_122114	66498.0	Mm.260360	NM_025600	ENSMUSG00000074247	Dda1	1500034J01Rik|1700095J19Rik|R74921	DET1 and DDB1 associated 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21508427-2	chr9	21508327	21508527	+	818.333313	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001253894)	TTS (NM_001253894)	1467.0	NM_001324510	17083.0	Mm.196618	NM_010744	ENSMUSG00000032180	Tmed1	Il1rl1l|Ly84l|St2l	transmembrane p24 trafficking protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-54955419-2	chr11	54955319	54955519	+	886.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271456, intron 1 of 18)	B1_Mm|SINE|Alu	7521.0	NM_021327	57783.0	Mm.259671	NM_021327	ENSMUSG00000020400	Tnip1	ABIN|ABIN-1|ABIN1|AU018810|Naf1|Nef|VAN	TNFAIP3 interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-92945126-2	chr1	92945026	92945226	+	557.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_011796, exon 9 of 12)	exon (NM_011796, exon 9 of 12)	5464.0	NR_015525	100037260.0	Mm.442236	NR_015525	ENSMUSG00000100632	9430060I03Rik	-	RIKEN cDNA 9430060I03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152528391-4	chr1	152528295	152528495	+	809.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001346119, exon 15 of 18)	exon (NM_001346119, exon 15 of 18)	96822.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-49567820-4	chr4	49567714	49567914	+	965.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18268.0	NM_144903	230163.0	Mm.482116	NM_144903	ENSMUSG00000028307	Aldob	Aldo-2|Aldo2|BC016435	aldolase B, fructose-bisphosphate	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-47919310-4	chr19	47919199	47919399	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001001738)	promoter-TSS (NM_001001738)	0.0	NM_001001738	414801.0	Mm.29457	NM_001001738	ENSMUSG00000044948	Itprip	4833424O12Rik|DANGER	inositol 1,4,5-triphosphate receptor interacting protein	protein-coding	4.60310366916791	3.10699743767583	3.84047843436499	4.43256596970239	4.29917732615574	4.46934685221434	4.08817195354625	4.73539995893609	0.37932492461648	0.40784709368168	0.891845785649541
Merged-chr16-21642237-4	chr16	21642169	21642369	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081366, intron 46 of 46)	intron (NM_001081366, intron 46 of 46)	52396.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-108210975-2	chr3	108210875	108211075	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289545)	promoter-TSS (NM_001289545)	-448.0	NM_175183	72522.0	Mm.187326	NM_175183	ENSMUSG00000048997	Atxn7l2	2610528J18Rik	ataxin 7-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31234108-4	chr14	31233983	31234183	+	895.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16210.0	NM_001025379	218877.0	Mm.27812	NM_001025379	ENSMUSG00000021904	Sema3g	AK129018	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3G	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-89337482-4	chr7	89337377	89337577	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360746, intron 2 of 14)	MER5A1|DNA|hAT-Charlie	1310.0	NM_028343	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135490550-2	chr5	135490450	135490650	+	762.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146001, intron 1 of 30)	B4|SINE|B4	54572.0	NM_146001	215114.0	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-34488836-1	chr9	34488736	34488936	+	769.0	f0_balb.idr	5' UTR (NM_026324, exon 1 of 16)	5' UTR (NM_026324, exon 1 of 16)	105.0	NM_001190914	67703.0	Mm.220710	NM_026324	ENSMUSG00000032036	Kirrel3	1500010O20Rik|2900036G11Rik|NEPH2|SST4|mKIAA1867	kirre like nephrin family adhesion molecule 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59820563-1	chr15	59820463	59820663	+	613.0	f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-25604.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	1.09900824573908	0.268585683264312	0.258154119518702	1.50159781626325	0.238193602334549	0.270911065967977	0.260471449474413	0.630741183004342	-2.97655544242158	0.132005969161726	1
Merged-chr11-3450224-1	chr11	3450124	3450324	+	578.0	f0_balb.idr	intron (NM_145355, intron 1 of 7)	intron (NM_145355, intron 1 of 7)	-2213.0	NR_028317	71523.0	Mm.72795	NM_027820	ENSMUSG00000034587	8430429K09Rik	-	RIKEN cDNA 8430429K09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-34197496-2	chr7	34197396	34197596	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360710)	promoter-TSS (NM_001360710)	-826.0	NM_001360710	68079.0	Mm.38173	NM_026549	ENSMUSG00000002635	Pdcd2l	6030457N17Rik	programmed cell death 2-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-149947164-4	chr1	149947060	149947260	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008869, intron 1 of 17)	intron (NM_008869, intron 1 of 17)	14130.0	NM_008869	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-51894465-3	chr14	51894356	51894556	+	995.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001039676, exon 3 of 4)	exon (NM_001039676, exon 3 of 4)	846.0	NM_001039676	214922.0	Mm.281343	NM_001039676	ENSMUSG00000072572	Slc39a2	F730005G13Rik|Gm1789|Gm289|Zip2	solute carrier family 39 (zinc transporter), member 2	protein-coding	-1.5061220274826	-1.47360709383584	-1.48343987814663	-1.49151681994238	-1.50383953926072	-1.47147628845725	-1.0170701920923	-1.49007105122263	2.15652851593596	0.535359572134045	1
Merged-chr14-103944896-3	chr14	103944784	103944984	+	778.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	82258.0	NR_045953	73877.0	Mm.399172	NR_045953	ENSMUSG00000115727	4930432J09Rik	-	RIKEN cDNA 4930432J09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-77823935-3	chr1	77823868	77824068	+	860.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-308880.0	NM_007936	13838.0	Mm.400747	NM_007936	ENSMUSG00000026235	Epha4	2900005C20Rik|AI385584|Cek8|Hek8|Sek|Sek1|Tyro1|rb	Eph receptor A4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-28955368-2	chr10	28955268	28955468	+	783.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30938.0	NM_026336	67719.0	Mm.440480	NM_026336	ENSMUSG00000015519	2310057J18Rik	2210414P04Rik|Leg1	RIKEN cDNA 2310057J18 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-34852219-2	chr1	34852119	34852319	+	550.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145516, intron 1 of 7)	intron (NM_145516, intron 1 of 7)	2230.0	NM_001357425	226971.0	Mm.292751	NM_145516	ENSMUSG00000026123	Plekhb2	2310009M15Rik|AU018239|Evt2|Phdc|evt-2	pleckstrin homology domain containing, family B (evectins) member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-104868318-4	chr14	104868213	104868413	+	873.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015593, intron 2 of 5)	intron (NR_015593, intron 2 of 5)	229166.0	NR_015593	320249.0	Mm.320725	NR_015593	ENSMUSG00000115432	D130009I18Rik	-	RIKEN cDNA D130009I18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-134584100-2	chr5	134584000	134584200	+	658.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_020022, intron 1 of 10)	intron (NM_020022, intron 1 of 10)	1410.0	NM_020022	19718.0	Mm.332739	NM_020022	ENSMUSG00000023104	Rfc2	2610008M13Rik|40kDa|AI326953|Recc2	replication factor C (activator 1) 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-4507274-2	chr2	4507174	4507374	+	797.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 5 of 23)	ID_B1|SINE|B4	-52480.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69101764-2	chr11	69101664	69101864	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_011065, exon 6 of 23)	exon (NM_011065, exon 6 of 23)	1612.0	NM_001159367	18626.0	Mm.7373	NM_011065	ENSMUSG00000020893	Per1	Hftm|Per|m-rigui|mPer1	period circadian clock 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-75187034-4	chr14	75186920	75187120	+	920.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008879, intron 2 of 16)	intron (NM_008879, intron 2 of 16)	50595.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116867628-2	chr11	116867590	116867790	+	837.142822	f1_balb.idr|f1_c57bl6.idr	intron (NM_178620, intron 9 of 12)	B2_Mm2|SINE|B2	13690.0	NM_001361586	69900.0	Mm.348004	NM_178620	ENSMUSG00000020818	Mfsd11	2600014M03Rik	major facilitator superfamily domain containing 11	protein-coding	2.96228108858172	2.74447217245237	2.96063861535681	2.96379841519565	2.83875105533652	1.62814050721768	2.78642898597001	2.80189314755249	-0.577324003526631	0.436521493794627	0.908322039984034
Merged-chr11-95041440-4	chr11	95041328	95041528	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133667)	promoter-TSS (NM_133667)	-57.0	NM_133667	18604.0	Mm.29768	NM_133667	ENSMUSG00000038967	Pdk2	-	pyruvate dehydrogenase kinase, isoenzyme 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-42502676-4	chr10	42502569	42502769	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017472, intron 1 of 3)	CpG	615.0	NM_017472	54198.0	Mm.277870	NM_017472	ENSMUSG00000019804	Snx3	SDP3	sorting nexin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-136173225-2	chr4	136173125	136173325	+	792.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177733, intron 1 of 6)	intron (NM_177733, intron 1 of 6)	951.0	NM_177733	242705.0	Mm.307932	NM_177733	ENSMUSG00000018983	E2f2	E2F-2	E2F transcription factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-88319498-2	chr8	88319400	88319600	+	570.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037724, intron 16 of 27)	intron (NM_001037724, intron 16 of 27)	25296.0	NM_001037724	11513.0	Mm.288206	NM_007406	ENSMUSG00000031659	Adcy7	AA407758	adenylate cyclase 7	protein-coding	-0.947981310248532	-1.06986221617136	-1.08111523493323	-1.08767915324048	-0.521931119253548	-1.06742364006257	-1.07856779814469	-1.08733643431101	1.79154211409157	0.579573222034837	1
Merged-chr11-54988991-4	chr11	54988896	54989096	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_138556, intron 19 of 24)	L1MB3|LINE|L1	-26056.0	NM_001271455	57783.0	Mm.259671	NM_021327	ENSMUSG00000020400	Tnip1	ABIN|ABIN-1|ABIN1|AU018810|Naf1|Nef|VAN	TNFAIP3 interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-17393490-4	chr17	17393374	17393574	+	953.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_025934, exon 10 of 10)	exon (NM_025934, exon 10 of 10)	-9212.0	NM_025681	66643.0	Mm.268018	NM_025681	ENSMUSG00000047786	Lix1	5730466L18Rik	limb and CNS expressed 1	protein-coding	1.57075700187043	2.92100660206703	2.71076190073156	1.66207059784775	2.61067971014231	3.45446648126064	3.52865982302021	2.25368937591491	1.33667004246206	0.105174206105728	0.505892575341078
Merged-chr7-19083950-4	chr7	19083862	19084062	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_126095, exon 1 of 15)	non-coding (NR_126095, exon 1 of 15)	113.0	NM_001190491	13400.0	Mm.6529	NM_032418	ENSMUSG00000030409	Dmpk	DM|DMK|Dm15|MDPK|MT-PK	dystrophia myotonica-protein kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-3743259-4	chr13	3743132	3743332	+	907.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61086.0	NM_027416	70405.0	Mm.20079	NM_027416	ENSMUSG00000063130	Calml3	2310068O22Rik|AI326174	calmodulin-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-61583927-2	chr8	61583827	61584027	+	855.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001293772, intron 10 of 21)	intron (NM_001293772, intron 10 of 21)	7242.0	NM_001293774	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-149403182-2	chr4	149403082	149403282	+	813.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_022022, intron 1 of 26)	intron (NM_022022, intron 1 of 26)	23449.0	NM_022022	63958.0	Mm.415260	NM_022022	ENSMUSG00000028960	Ube4b	4930551I19Rik|4933406G05Rik|AU014668|D4Bwg0973e|UFD2|UFD2a|Ufd2p|mKIAA0684	ubiquitination factor E4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32909446-2	chr2	32909346	32909546	+	575.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146119, intron 2 of 13)	intron (NM_146119, intron 2 of 13)	33312.0	NM_146119	227737.0	Mm.301646	NM_146119	ENSMUSG00000026796	Fam129b	9130404D14Rik	family with sequence similarity 129, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70015374-4	chr11	70015270	70015470	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017366)	promoter-TSS (NM_017366)	58.0	NM_017366	11370.0	Mm.18630	NM_017366	ENSMUSG00000018574	Acadvl	vlcad	acyl-Coenzyme A dehydrogenase, very long chain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-7714281-3	chr9	7714197	7714397	+	830.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18666.0	NR_126562	102722.0	Mm.334941	NR_126562	ENSMUSG00000086381	AV064505	-	expressed sequence AV064505	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107357901-1	chr9	107357801	107358001	+	660.0	f1_balb.idr	Intergenic	Intergenic	17261.0	NM_175486	235599.0	Mm.71039	NM_175486	ENSMUSG00000037977	6430571L13Rik	-	RIKEN cDNA 6430571L13 gene	protein-coding	1.8383304472097	1.04825742443653	1.5624116221736	1.21503092693036	1.76918550199341	1.88732603656175	1.42415191159974	1.65211929637592	0.778753649300007	0.499480025720587	0.937736493103838
Merged-chr6-22418492-1	chr6	22418392	22418592	+	634.333313	f0_balb.idr	Intergenic	Intergenic	-62411.0	NM_138587	27999.0	Mm.490307	NM_138587	ENSMUSG00000029672	Fam3c	D6Wsu176e|Ilei	family with sequence similarity 3, member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-16997003-4	chr10	16996900	16997100	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038020, intron 1 of 8)	intron (NR_038020, intron 1 of 8)	98782.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	4.77613985412308	4.2381264126545	5.39313110076365	4.22663568882371	4.10274499899829	4.19833341956095	4.130076423603	4.0047069749999	-0.822433920724929	0.0501596185644322	0.326481972985203
Merged-chr6-22424283-2	chr6	22424183	22424383	+	681.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68202.0	NM_138587	27999.0	Mm.490307	NM_138587	ENSMUSG00000029672	Fam3c	D6Wsu176e|Ilei	family with sequence similarity 3, member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-95922990-3	chr5	95922877	95923077	+	980.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME1|LINE|L1	-33962.0	NM_018866	55985.0	Mm.10116	NM_018866	ENSMUSG00000023078	Cxcl13	4631412M08Rik|ANGIE2|Angie|BCA-1|BLC|BLR1L|Scyb13	chemokine (C-X-C motif) ligand 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-21621111-1	chr14	21621011	21621211	+	564.5	f0_balb.idr	intron (NM_017479, intron 5 of 16)	intron (NM_017479, intron 5 of 16)	93465.0	NM_001013826	435391.0	Mm.295860	NM_001013826	ENSMUSG00000063821	Dupd1	EG435391	dual specificity phosphatase and pro isomerase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-31169813-2	chr16	31169713	31169913	+	572.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030138, intron 1 of 22)	RLTR11B|LTR|ERVK	31425.0	NM_030138	78618.0	Mm.274646	NM_030138	ENSMUSG00000049076	Acap2	4832442G16|9530039J15Rik|CNT-B2|Centb2|mKIAA0041	ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-79027909-2	chr15	79027809	79028009	+	894.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008197)	promoter-TSS (NM_008197)	-303.0	NM_008197	14958.0	Mm.24350	NM_008197	ENSMUSG00000096210	H1f0	D130017D06Rik|H1(0)|H1fv	H1 histone family, member 0	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-79347467-4	chr15	79347329	79347529	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001304831)	promoter-TSS (NM_001304831)	-91.0	NM_010755	17133.0	Mm.86646	NM_010755	ENSMUSG00000042622	Maff	-	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein F (avian)	protein-coding	3.91167023258853	3.23159142733398	2.1888766603342	2.3163648516196	4.55502234174201	4.00436705844322	3.24865126964135	2.92503264405588	1.08151470294524	0.111013484068176	0.52126279318319
Merged-chr5-107287379-2	chr5	107287279	107287479	+	641.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011578, intron 1 of 16)	intron (NM_011578, intron 1 of 16)	2250.0	NM_011578	21814.0	Mm.200775	NM_011578	ENSMUSG00000029287	Tgfbr3	1110036H20Rik|AU015626|AW215636|TBRIII	transforming growth factor, beta receptor III	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-63849748-4	chr17	63849633	63849833	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-14248.0	NM_001037997	14158.0	Mm.23039	NM_008000	ENSMUSG00000000127	Fer	AV082135|C330004K01Rik|Fert|Fert2	fer (fms/fps related) protein kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81281003-2	chr10	81280937	81281137	+	588.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013769, intron 5 of 20)	ZP3AR|Satellite|Satellite	4744.0	NM_001282096	27375.0	Mm.27984	NM_013769	ENSMUSG00000034917	Tjp3	-	tight junction protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19208589-1	chr7	19208489	19208689	+	560.0	f1_c57bl6.idr	Intergenic	Intergenic	-3949.0	NM_175668	319197.0	Mm.135984	NM_175668	ENSMUSG00000044317	Gpr4	-	G protein-coupled receptor 4	protein-coding	-0.110301958738487	0.476179100496905	-0.382660723989115	-0.211972471556278	-0.391436762015381	-0.376911206912682	-0.381624358330388	-0.385656539609904	-3.69131194388093	0.123891593368346	1
Merged-chr18-11657782-4	chr18	11657694	11657894	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081223, intron 1 of 18)	CpG	445.0	NM_001081223	225182.0	Mm.154275	NM_175458	ENSMUSG00000041238	Rbbp8	9930104E21Rik|CtIP|RBBP-8|RIM|SAE2	retinoblastoma binding protein 8, endonuclease	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117865877-3	chr10	117865767	117865967	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-19893.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-117122473-1	chr4	117122373	117122573	+	1000.0	f1_balb.idr	intron (NR_024078, intron 3 of 6)	intron (NR_024078, intron 3 of 6)	3252.0	NR_024078	78611.0	Mm.446227	NM_001033187		Btbd19	9530048O09Rik|BB115071	BTB (POZ) domain containing 19	ncRNA	1.44844409089701	2.03402632342922	1.14791097003364	1.90832535633771	1.5965396337236	2.04943463203253	1.97979206951829	1.91821240405676	0.623124932644136	0.5569612185	0.960321604678676
Merged-chr4-150917869-2	chr4	150917769	150917969	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2286.0	NM_011612	21942.0	Mm.244187	NM_011612	ENSMUSG00000028965	Tnfrsf9	4-1BB|A930040I11Rik|AA408498|AI325004|CDw137|Cd137|ILA|Ly63	tumor necrosis factor receptor superfamily, member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-82933829-3	chr4	82933713	82933913	+	909.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_154662, intron 26 of 35)	intron (NR_154662, intron 26 of 35)	-48662.0	NM_009887	12622.0	Mm.6780	NM_009887	ENSMUSG00000038192	Cer1	Cerl|Cerl1|Cerr1|cer-1	cerberus 1, DAN family BMP antagonist	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-18732718-2	chr16	18732618	18732818	+	590.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44129.0	NM_013805	12741.0	Mm.22768	NM_013805	ENSMUSG00000041378	Cldn5	AI854493|MBEC1|Tmvcf	claudin 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-13673478-1	chr9	13673378	13673578	+	543.0	f0_balb.idr	intron (NM_173776, intron 1 of 3)	intron (NM_173776, intron 1 of 3)	11018.0	NM_173776	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127333619-1	chr7	127333519	127333719	+	547.0	f1_c57bl6.idr	3' UTR (NM_008400, exon 31 of 31)	3' UTR (NM_008400, exon 31 of 31)	11695.0	NM_146202	233890.0	Mm.23031	NM_146202	ENSMUSG00000047371	Zfp768	BC026432|Znf768	zinc finger protein 768	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34351374-1	chr17	34351274	34351474	+	852.0	f1_c57bl6.idr	Intergenic	Intergenic	-3448.0	NM_079835	547431.0	Mm.441007	NM_079835	ENSMUSG00000024340	Btnl2	BTL-II|BTLN2|Btl2|Gm315|NG9	butyrophilin-like 2	protein-coding	2.19967896041146	1.40546981705273	1.08304087843994	2.79253675056773	2.46469150089859	1.12308612775304	1.09042895350525	2.8077587996883	0.116942925276112	0.922952803965978	0.998431161219273
Merged-chr6-116209499-1	chr6	116209399	116209599	+	540.0	f1_balb.idr	intron (NM_026585, intron 3 of 30)	intron (NM_026585, intron 3 of 30)	1466.0	NM_026585	28006.0	Mm.28524	NM_026585	ENSMUSG00000024104	Washc2	A130095H06|C530005J20Rik|D6Wsu116e|Fam21	WASH complex subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43523645-4	chr4	43523577	43523777	+	860.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009416)	promoter-TSS (NM_009416)	-123.0	NM_001277875	22004.0	Mm.646	NM_009416	ENSMUSG00000028464	Tpm2	Tpm-2|Trop-2	tropomyosin 2, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-28953037-5	chr13	28952917	28953117	+	976.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009238, exon 1 of 1)	exon (NM_009238, exon 1 of 1)	682.0	NM_009238	20677.0	Mm.240627	NM_009238	ENSMUSG00000076431	Sox4	AA682046|Sox-4	SRY (sex determining region Y)-box 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3058910-2	chr4	3058810	3059010	+	811.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-113173.0	NM_001167534	100312470.0	Mm.480297	NM_001167534	ENSMUSG00000115072	Vmn1r2	Gm11776	vomeronasal 1 receptor 2	protein-coding	0.238214677349406	0.277063188703476	0.26468015007874	0.254904748349216	1.40956870012781	0.279811973754774	0.507722190914574	1.5947461003163	4.7870673096554	0.00969833689219559	0.106557368161687
Merged-chr10-99632781-4	chr10	99632681	99632881	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038019, intron 1 of 2)	intron (NR_038019, intron 1 of 2)	9139.0	NR_038018	100417125.0	Mm.391428	NR_038018	ENSMUSG00000112503	Gm18409	-	mediator of cell motility 1 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-144215484-4	chr1	144215382	144215582	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33622.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67503736-2	chr10	67503636	67503836	+	639.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34133.0	NM_010118	13654.0	Mm.290421	NM_010118	ENSMUSG00000037868	Egr2	Egr-2|Krox-20|Krox20|NGF1-B|Zfp-25|Zfp-6	early growth response 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117320618-4	chr11	117320494	117320694	+	926.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113486, intron 3 of 11)	intron (NM_001113486, intron 3 of 11)	-11121.0	NM_017380	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-37778887-4	chr13	37778809	37779009	+	882.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-47129.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-27471736-2	chr7	27471636	27471836	+	797.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2104.0	NM_133210	170742.0	Mm.200120	NM_133210	ENSMUSG00000055200	Sertad3	AW124805|D1Mgi51|Rbt1|Sei3	SERTA domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-49198390-2	chr13	49198290	49198490	+	726.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	10843.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-45300601-4	chr9	45300477	45300677	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18523.0	NM_001013373	214531.0	Mm.394987	NM_001013373	ENSMUSG00000037129	Tmprss13	BC010843|Tpmrss13	transmembrane protease, serine 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122318332-4	chr5	122318238	122318438	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177242, intron 4 of 5)	intron (NM_177242, intron 4 of 5)	33940.0	NM_177242	320717.0	Mm.489670	NM_177242	ENSMUSG00000038582	Pptc7	9130017A15Rik|AA672638|AI848390|TA-PP2C	PTC7 protein phosphatase homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-45052449-4	chr13	45052352	45052552	+	890.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50356.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-89276395-1	chr4	89276295	89276495	+	561.0	f1_balb.idr	intron (NM_001040654, intron 2 of 2)	intron (NM_001040654, intron 2 of 2)	5797.0	NM_001040654	12578.0	Mm.4733	NM_009877	ENSMUSG00000044303	Cdkn2a	ARF-INK4a|Arf|INK4a-ARF|Ink4a/Arf|MTS1|Pctr1|p16|p16(INK4a)|p16INK4a|p19<ARF>|p19ARF	cyclin dependent kinase inhibitor 2A	protein-coding	0.602675336465753	0.201541918759182	0.197038012333146	0.335408382324407	0.756034140108335	0.645149418055508	0.198027205133967	0.194195525855316	1.01238057450762	0.616627147918965	1
Merged-chr11-85811981-2	chr11	85811881	85812081	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_077059, intron 1 of 4)	intron (NR_077059, intron 1 of 4)	20407.0	NR_077059	69909.0	Mm.440214	NR_077059	ENSMUSG00000087013	2610027K06Rik	-	RIKEN cDNA 2610027K06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-115090679-3	chr13	115090575	115090775	+	869.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134058)	promoter-TSS (NM_134058)	-517.0	NM_134058	105083.0	Mm.486295	NM_134058	ENSMUSG00000042275	Pelo	AA409897|AI852218	pelota mRNA surveillance and ribosome rescue factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-9636727-2	chr13	9636627	9636827	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081426, intron 30 of 36)	intron (NM_001081426, intron 30 of 36)	127083.0	NM_001347471	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-141115464-2	chr5	141115364	141115564	+	672.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	G-rich|Low_complexity|Low_complexity	-114868.0	NM_175362	108723.0	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-105002679-2	chr3	105002579	105002779	+	592.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001163332, exon 6 of 6)	3' UTR (NM_001163332, exon 6 of 6)	-40970.0	NM_009520	22414.0	Mm.10740	NM_009520	ENSMUSG00000027840	Wnt2b	Wnt13	wingless-type MMTV integration site family, member 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-59219194-4	chr11	59219095	59219295	+	711.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007476, intron 1 of 4)	B3A|SINE|B2	8967.0	NM_001130408	11840.0	Mm.371546	NM_007476	ENSMUSG00000048076	Arf1	-	ADP-ribosylation factor 1	protein-coding	1.45415427800273	0.675082402168088	0.66311034029954	1.36945399485324	1.46943000770797	0.67775709600292	0.665766166577624	1.37831641721909	0.0358705479253102	0.982358144138174	0.998431161219273
Merged-chr2-60874144-4	chr2	60874077	60874277	+	823.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020296, intron 1 of 13)	MTD|LTR|ERVL-MaLR	7261.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-49684289-2	chr19	49684189	49684389	+	569.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	994357.0	NM_001252501	58178.0	Mm.313672	NM_021377	ENSMUSG00000043531	Sorcs1	Sorcs|mSorCS	sortilin-related VPS10 domain containing receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-122985321-4	chr4	122985223	122985423	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10608.0	NM_001303121	16918.0	Mm.1055	NM_008506	ENSMUSG00000028654	Mycl	AW536278|L-myc|Lmyc-1|Lmyc1|Mycl1|bHLHe38	v-myc avian myelocytomatosis viral oncogene lung carcinoma derived	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-7177012-4	chr9	7176909	7177109	+	987.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029851)	promoter-TSS (NM_029851)	37.0	NM_029851	110350.0	Mm.237596	NM_029851	ENSMUSG00000047193	Dync2h1	4432416O06Rik|AI448217|D030010H02Rik|D330044F14Rik|DHC1b|DHC2|Dnchc2|b2b414Clo|mKIAA1997	dynein cytoplasmic 2 heavy chain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-82868314-2	chr18	82868214	82868414	+	676.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12417.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116139633-2	chr11	116139533	116139733	+	905.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024177)	promoter-TSS (NM_024177)	-765.0	NM_024177	60441.0	Mm.29974	NM_024177	ENSMUSG00000020775	Mrpl38	1110036N21Rik|4733401F03Rik|MRP-L3|R75240|Rpml3	mitochondrial ribosomal protein L38	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-8791945-2	chr10	8791845	8792045	+	863.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 4 of 19)	intron (NM_175155, intron 4 of 19)	94125.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-73648266-3	chr7	73648203	73648403	+	845.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	38260.0	NR_033604	244061.0	Mm.484605	NR_033604	ENSMUSG00000108337	Gm4971	EG244061	Smad nuclear interacting protein 1 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-59207348-3	chr2	59207287	59207487	+	912.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 1 of 20)	intron (NM_175464, intron 1 of 20)	46537.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-43339647-2	chr7	43339547	43339747	+	850.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11694.0	NM_001271019	233186.0	Mm.290569	NM_145581	ENSMUSG00000039013	Siglecf	Siglec5|mSiglec-F	sialic acid binding Ig-like lectin F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-4413343-2	chr8	4413243	4413443	+	695.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	63755.0	NM_009138	20300.0	Mm.7275	NM_009138	ENSMUSG00000023235	Ccl25	A130072A22Rik|AI852536|CKb15|Scya25|TECK	chemokine (C-C motif) ligand 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-73361229-4	chr17	73361119	73361319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033444, intron 4 of 22)	intron (NM_001033444, intron 4 of 22)	38077.0	NM_001033444	381122.0	Mm.81496	NM_001033444	ENSMUSG00000043705	Capn13	CANP 13|Gm943	calpain 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-35347575-3	chr10	35347472	35347672	+	926.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	864172.0	NM_010237	14302.0	Mm.332432	NM_010237	ENSMUSG00000019779	Frk	BSK|BSK/IYK|C85044|GTK|RAK	fyn-related kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-24979249-4	chr19	24979174	24979374	+	920.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-17658.0	NM_146097	226043.0	Mm.272127	NM_146097	ENSMUSG00000024878	Cbwd1	AV349248|BC018472	COBW domain containing 1	protein-coding	3.11337294899111	3.2216288702025	2.798421387631	3.47690022165654	2.6013216512399	2.63466221339772	3.0425499082221	3.3626476517748	-0.39342225104893	0.536728836847131	0.953700051947242
Merged-chr8-106307780-4	chr8	106307670	106307870	+	656.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021491, intron 1 of 8)	intron (NM_021491, intron 1 of 8)	25541.0	NR_126090	75044.0	Mm.445896	NR_126090		4930506A18Rik	-	RIKEN cDNA 4930506A18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-61397002-4	chr3	61396903	61397103	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32496.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55708116-4	chr19	55707994	55708194	+	924.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5890.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-125599775-4	chr7	125599691	125599891	+	919.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3638.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-92270014-4	chr9	92269898	92270098	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011636, intron 8 of 8)	intron (NM_011636, intron 8 of 8)	-2637.0	NR_105808	102465203.0		NR_105808	ENSMUSG00000098766	Mir6386	Gm27842|mmu-mir-6386	microRNA 6386	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-182563424-2	chr1	182563324	182563524	+	637.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-1583.0	NM_001145806	170725.0	Mm.189201	NM_130890	ENSMUSG00000038599	Capn8	nCL-2|nCL-2'	calpain 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-35282588-4	chr9	35282505	35282705	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040715, intron 2 of 4)	intron (NR_040715, intron 2 of 4)	1500.0	NR_040715	71133.0	Mm.158577	NR_040715	ENSMUSG00000111746	4933422A05Rik	-	RIKEN cDNA 4933422A05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-33079667-4	chr13	33079568	33079768	+	809.383301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4435.0	NM_173052	282663.0	Mm.314490	NM_173052	ENSMUSG00000051029	Serpinb1b	6330533H24Rik|EIB|Serpin1b1|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 1b	protein-coding	-0.370209398724317	-0.35754145695463	0.303666355756307	-0.364899844534278	-0.224229619525228	-0.356603933185681	-0.360781116856349	0.0631840309047725	-0.472751703128228	0.850361000994485	1
Merged-chr10-91082880-4	chr10	91082791	91082991	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009684)	promoter-TSS (NM_009684)	-148.0	NM_009684	11783.0	Mm.220289	NM_009684	ENSMUSG00000019979	Apaf1	6230400I06Rik|Apaf-1|Apaf1l|fog|mKIAA0413	apoptotic peptidase activating factor 1	protein-coding	6.71700315259155	7.51469264156482	7.20619863691255	6.73857785519864	7.22524584643776	6.94411432237377	7.46998959840051	7.32037070741834	0.186620393969181	0.35181380615779	0.852338361069366
Merged-chr7-80353992-3	chr7	80353890	80354090	+	751.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172903, intron 21 of 23)	intron (NM_172903, intron 21 of 23)	10853.0	NM_026812	68695.0	Mm.21171	NM_026812	ENSMUSG00000030532	Hddc3	1110033O09Rik|C86475|MESH1	HD domain containing 3	protein-coding	1.61654674558281	2.05927075891878	1.052785610903	1.03704760572097	1.73894747544075	2.07567761476129	1.63219775488257	1.83087385058826	0.940121997387837	0.421266425834104	0.900322118218157
Merged-chr1-91380674-4	chr1	91380580	91380780	+	816.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023343, intron 9 of 11)	intron (NM_023343, intron 9 of 11)	14250.0	NM_173395	227358.0	Mm.389157	NM_173395	ENSMUSG00000047443	Erfe	4832406C22|Fam132b|myonectin	erythroferrone	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-54886416-3	chr6	54886312	54886512	+	798.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199143, intron 4 of 4)	intron (NM_199143, intron 4 of 4)	69496.0	NM_199143	387524.0	Mm.286149	NM_199143	ENSMUSG00000058446	Znrf2	1190002C14Rik|AU044205|D6Ertd365e	zinc and ring finger 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-61122504-4	chr10	61122394	61122594	+	953.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009163, intron 3 of 14)	intron (NM_009163, intron 3 of 14)	25190.0	NM_009163	20397.0	Mm.412319	NM_009163	ENSMUSG00000020097	Sgpl1	AI428538|D10Xrf456|S1PL|Spl	sphingosine phosphate lyase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-80769521-2	chr17	80769421	80769621	+	731.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41496.0	NM_001290345	225028.0	Mm.311948	NM_001081357	ENSMUSG00000024242	Map4k3	4833416M01Rik|4833416M07Rik|9530052P13Rik|Glk|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1	mitogen-activated protein kinase kinase kinase kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-111336482-1	chr10	111336382	111336582	+	735.0	f0_balb.idr	Intergenic	Intergenic	37803.0	NM_027914	71769.0	Mm.45256	NM_027914	ENSMUSG00000035759	Bbs10	1300007O09Rik|AI452285	Bardet-Biedl syndrome 10 (human)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-105025490-4	chr12	105025386	105025586	+	844.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5655.0	NR_037229	100526471.0		NR_037229	ENSMUSG00000106366	Mir3069	mir-3069|mmu-mir-3069	microRNA 3069	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33937034-4	chr16	33936934	33937134	+	909.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 10 of 14)	intron (NM_001145884, intron 10 of 14)	30004.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97800118-1	chr6	97800018	97800218	+	574.0	f0_balb.idr	Intergenic	Lx9|LINE|L1	-6940.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-87811953-7	chr6	87811841	87812041	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039394)	promoter-TSS (NM_001039394)	157.0	NR_104477	69834.0	Mm.37380	NM_133717	ENSMUSG00000030055	Rab43	1810048P08Rik|2500004H21Rik|AW490415	RAB43, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-120193332-4	chr6	120193235	120193435	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347432)	promoter-TSS (NM_001347432)	-488.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120037445-2	chr11	120037331	120037531	+	854.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001198785, intron 1 of 13)	intron (NM_001198785, intron 1 of 13)	4350.0	NM_001198787	11302.0	Mm.6826	NM_007377	ENSMUSG00000025375	Aatk	AATYK|aatyk1|mKIAA0641	apoptosis-associated tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-145811704-2	chr2	145811604	145811804	+	592.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028724, intron 2 of 12)	B1F|SINE|Alu	25588.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-107067455-3	chr4	107067290	107067490	+	849.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025500)	promoter-TSS (NM_025500)	402.0	NM_175471	230582.0	Mm.44608	NM_175471	ENSMUSG00000028621	Cyb5rl	2810410C14Rik	cytochrome b5 reductase-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-102952679-2	chr2	102952579	102952779	+	695.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MDa|LINE|L1	-51014.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115710172-2	chr11	115710087	115710287	+	689.416626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1590.0	NM_008163	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	-2.18138529563533	-2.15523716995652	-2.1631445789866	-2.16963996020037	-2.05513010215571	-2.15352360143315	-2.16135451490766	-2.16847729006863	0.759018020146679	0.829933115115583	1
Merged-chr8-45333748-4	chr8	45333642	45333842	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133969)	promoter-TSS (NM_133969)	-546.0	NM_133969	102294.0	Mm.245297	NM_133969	ENSMUSG00000079057	Cyp4v3	AU043077|AW111961|Cyp4v2	cytochrome P450, family 4, subfamily v, polypeptide 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47454818-3	chr17	47454699	47454899	+	778.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145489, intron 2 of 4)	intron (NM_145489, intron 2 of 4)	-17424.0	NM_029296	75462.0	Mm.46129	NM_029296	ENSMUSG00000047150	1700001C19Rik	-	RIKEN cDNA 1700001C19 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-109047916-4	chr3	109047784	109047984	+	898.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-20277.0	NM_001163567	329739.0	Mm.69013	NM_001163567	ENSMUSG00000040339	Fam102b	1600010D10Rik|B430201A12Rik	family with sequence similarity 102, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-19575076-4	chr4	19574970	19575170	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025476)	promoter-TSS (NM_025476)	4.0	NM_025476	66302.0	Mm.440686	NM_025476	ENSMUSG00000028229	Rmdn1	Fam82b|RMD-1	regulator of microtubule dynamics 1	protein-coding	6.00780734056859	6.77663189344707	5.39645786805879	5.19682963708567	5.84896488276692	6.1003628578685	6.25116326252587	6.04679772830883	0.0944600413273747	0.760890054174796	0.998431161219273
Merged-chr1-152798982-2	chr1	152798882	152799082	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER2|LTR|ERV1	-1171.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-105748426-4	chr4	105748299	105748499	+	935.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-492814.0	NR_151521	105244641.0	Mm.404914	NR_151521		Gm12724	-	predicted gene 12724	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-107829147-3	chr4	107829042	107829242	+	622.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080926, intron 2 of 18)	intron (NM_001080926, intron 2 of 18)	-6120.0	NR_151515	619295.0	Mm.331760	NM_001033800		Lrp8os2	B230314M03Rik	low density lipoprotein receptor-related protein 8, apolipoprotein e receptor, opposite strand 2	ncRNA	1.16241548564709	0.677228399570094	1.02136759377535	1.59666399210432	0.946828187155652	0.6796133988177	0.866026833620008	1.24503622311255	-0.954633079380128	0.511526160579638	0.94512318675548
Merged-chr6-108504424-2	chr6	108504324	108504524	+	977.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 53 of 61)	B4A|SINE|B4	14681.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-121233030-2	chr11	121232930	121233130	+	599.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3721.0	NM_001252548	217370.0	Mm.27182	NM_144832	ENSMUSG00000039294	BC017643	-	cDNA sequence BC017643	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-90459215-4	chr16	90459119	90459319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015755, intron 4 of 10)	intron (NM_015755, intron 4 of 10)	72822.0	NM_015755	26559.0	Mm.125874	NM_015755	ENSMUSG00000053414	Hunk	Bstk1|Mak-v	hormonally upregulated Neu-associated kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-50703991-4	chr15	50703903	50704103	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310481, intron 4 of 5)	intron (NM_001310481, intron 4 of 5)	185046.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35127783-2	chr17	35127683	35127883	+	916.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_033477, exon 3 of 3)	exon (NM_033477, exon 3 of 3)	1381.0	NM_033477	114585.0	Mm.42070	NM_033477	ENSMUSG00000043311	D17H6S53E	G4|NG34	DNA segment, Chr 17, human D6S53E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-123851066-5	chr9	123851027	123851227	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_148925, intron 1 of 18)	intron (NM_148925, intron 1 of 18)	534.0	NM_148925	17281.0	Mm.252941	NM_148925	ENSMUSG00000025241	Fyco1	2810409M01Rik|Mem2|RUFY3|ZFYVE7	FYVE and coiled-coil domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115490772-2	chr5	115490679	115490879	+	999.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	-6295.0	NM_133760	75387.0	Mm.332616	NM_133760	ENSMUSG00000029524	Sirt4	4930596O17Rik	sirtuin 4	protein-coding	2.61054599013213	3.26736812886888	1.82375494600515	3.99781917226142	3.08707344560805	2.84938377634412	1.83973526621442	3.63845101651977	-0.268294283959916	0.734631375614754	0.998431161219273
Merged-chr1-24633876-3	chr1	24633768	24633968	+	806.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44676.0	NM_026719	68421.0	Mm.336563	NM_026719	ENSMUSG00000073725	Lmbrd1	0910001K20Rik|AV347960	LMBR1 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-79649597-2	chr10	79649497	79649697	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3859.0	NM_001033473	382384.0	Mm.244510	NM_001033473	ENSMUSG00000035963	Odf3l2	Gm1157	outer dense fiber of sperm tails 3-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-92603047-4	chr5	92602969	92603169	+	837.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175096)	promoter-TSS (NM_175096)	18.0	NM_175096	52331.0	Mm.21965	NM_175096	ENSMUSG00000047963	Stbd1	D530019K15Rik|D5Ertd593e	starch binding domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-43038912-4	chr17	43038807	43039007	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178589, intron 2 of 5)	intron (NM_178589, intron 2 of 5)	22352.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	5.24616553869437	5.6132361050078	5.56344625539098	5.35105532488999	5.49201687088093	4.74193502713496	5.27314261353104	5.53217202816255	-0.164710348035495	0.573397813000437	0.964496317550327
Merged-chr8-125574437-4	chr8	125574295	125574495	+	780.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4532.0	NM_001357372	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	2.63520554437407	2.07218153051913	2.00500181444711	2.43962404499068	1.71493654908365	2.24455027108133	2.94907451533052	1.96059450448255	-0.0143899035999363	0.986903606699873	0.998431161219273
Merged-chr9-45167527-2	chr9	45167427	45167627	+	597.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-28239.0	NM_001198971	408059.0	Mm.249297	NM_001198971	ENSMUSG00000091996	BC049352	SMIM35	cDNA sequence BC049352	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-58916748-4	chr6	58916633	58916833	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361966, intron 24 of 25)	intron (NM_001361966, intron 24 of 25)	-9607.0	NM_021432	58243.0	Mm.389747	NM_021432	ENSMUSG00000055430	Nap1l5	1110020M21Rik	nucleosome assembly protein 1-like 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-113591516-4	chr13	113591422	113591622	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_130796)	TTS (NM_130796)	27042.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-87247675-2	chr17	87247576	87247776	+	902.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18271.0	NM_176808	193813.0	Mm.30251	NM_139295	ENSMUSG00000024150	Mcfd2	1810021C21Rik|F5f8d|Lman1ip|Sdnsf	multiple coagulation factor deficiency 2	protein-coding	2.76848185337537	2.1596693745457	2.63475269940465	2.84032813036281	2.93347333478968	1.44504742116031	1.40136595092443	3.38272011548236	-0.0411900321469548	0.96498747966307	0.998431161219273
Merged-chr12-5277147-4	chr12	5277027	5277227	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164493, intron 2 of 13)	intron (NM_001164493, intron 2 of 13)	98555.0	NM_001164493	208439.0	Mm.388281	NM_001164493	ENSMUSG00000020627	Klhl29	A230106N14Rik|Gm68|Kbtbd9|mKIAA1921	kelch-like 29	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35154165-1	chr17	35154065	35154265	+	872.0	f1_balb.idr	exon (NM_020027, exon 19 of 31)	exon (NM_020027, exon 19 of 31)	10712.0	NM_001199044	53761.0	Mm.272462	NM_020027	ENSMUSG00000024393	Prrc2a	3110039B05Rik|Bat-2|Bat2|D17H6S51E|G2|Wbp12|mKIAA4178	proline-rich coiled-coil 2A	protein-coding	0.97700127604091	1.27648981270458	0.544844937717883	1.63401755311674	0.521308608019676	1.28943743182108	0.547576213433477	0.536894295209362	-1.75871887480664	0.292360132215422	0.796730057462289
Merged-chr10-24823967-5	chr10	24823859	24824059	+	969.904785	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134005, intron 4 of 24)	intron (NM_134005, intron 4 of 24)	12236.0	NM_134005	209558.0	Mm.338425	NM_134005	ENSMUSG00000019989	Enpp3	AI876438|CD203c	ectonucleotide pyrophosphatase/phosphodiesterase 3	protein-coding	4.36233155016235	4.56766773453109	3.55399590307808	3.00378763495013	3.75004030643615	4.54785124427413	4.64072075595321	4.28330887989753	0.438395928516381	0.372610724208918	0.865109408625856
Merged-chr8-121971839-3	chr8	121971740	121971940	+	835.200012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016812, intron 1 of 13)	intron (NM_016812, intron 1 of 13)	-6184.0	NR_106096	102466915.0		NR_106096	ENSMUSG00000099140	Mir7237	Gm27482|mmu-mir-7237	microRNA 7237	ncRNA	-0.208626864309067	0.153619926712082	-0.199328174712597	-0.202827304729712	-0.207764864301536	0.298653570658198	-0.198327088213632	0.327250553699883	1.82289826803689	0.453837479662962	1
Merged-chr19-25628643-3	chr19	25628570	25628770	+	800.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18133.0	NM_177360	240590.0	Mm.62785	NM_177360	ENSMUSG00000042372	Dmrt3	-	doublesex and mab-3 related transcription factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-3481901-4	chr6	3481797	3481997	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178899, intron 3 of 9)	intron (NM_178899, intron 3 of 9)	12601.0	NM_178899	101202.0	Mm.206911	NM_178899	ENSMUSG00000044156	Hepacam2	AI987662	HEPACAM family member 2	protein-coding	4.8999885947486	3.98871622856346	3.93149089434183	5.29340560411327	4.63932950104262	4.46064003318546	4.82683221879422	5.44050913950992	0.283240009597274	0.500855043351826	0.938164885012783
Merged-chr14-75229164-2	chr14	75229064	75229264	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008879, intron 16 of 16)	intron (NM_008879, intron 16 of 16)	-13123.0	NM_019775	56373.0	Mm.24242	NM_019775	ENSMUSG00000021999	Cpb2	1110032P04Rik|4930405E17Rik|AI255929|CPR|Cpu|TAFI	carboxypeptidase B2 (plasma)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-111508786-4	chr13	111508695	111508895	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18668.0	NM_001361924	73274.0	Mm.57286	NM_028487	ENSMUSG00000032745	Gpbp1	1700034P14Rik|AU019836|D230035M11Rik|Gpbp|mGPBP	GC-rich promoter binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-34875485-4	chr6	34875395	34875595	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_197986)	TTS (NM_197986)	2570.0	NM_199145	78412.0	Mm.248440	NM_199145	ENSMUSG00000046806	3110062M04Rik	AL023049|Cyren|Mri	RIKEN cDNA 3110062M04 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-114863407-3	chr4	114863301	114863501	+	768.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41681.0	NR_033617	433746.0	Mm.388908	NR_033617	ENSMUSG00000055198	Gm12830	-	predicted gene 12830	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-147551765-2	chr4	147551665	147551865	+	584.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1512.0	NM_001014397	433804.0	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154	zinc finger protein 985	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106564462-4	chr11	106564364	106564564	+	962.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198292, intron 2 of 11)	intron (NM_198292, intron 2 of 11)	48466.0	NM_198292	21763.0	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-108781389-4	chr8	108781273	108781473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007496, intron 1 of 9)	intron (NM_007496, intron 1 of 9)	66729.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-119000293-2	chr10	119000193	119000393	+	940.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50206.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-152413905-2	chr2	152413805	152414005	+	663.333313	f1_balb.idr|f1_c57bl6.idr	exon (NM_175126, exon 1 of 1)	exon (NM_175126, exon 1 of 1)	1139.0	NM_175126	67917.0	Mm.391810	NM_175126	ENSMUSG00000074682	Zcchc3	2810406K24Rik	zinc finger, CCHC domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78804421-2	chr15	78804340	78804540	+	620.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-1398.0	NM_130859	105844.0	Mm.17629	NM_130859	ENSMUSG00000033170	Card10	AI449026|Bimp1|Carma3	caspase recruitment domain family, member 10	protein-coding	0.0887681723320688	-0.280564622116856	-0.285256676234766	-0.288880236508345	-0.143822254314152	-0.279507644502013	-0.284221377849568	0.531796895578246	1.61674972287747	0.50687366435579	1
Merged-chr6-38692255-4	chr6	38692144	38692344	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29175.0	NM_001101507	665180.0	Mm.349066	NM_001101507	ENSMUSG00000079598	Clec2l	AI414054|AW122724|Gm1064	C-type lectin domain family 2, member L	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-23842490-3	chr18	23842361	23842561	+	725.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162941, intron 3 of 7)	intron (NM_001162941, intron 3 of 7)	38491.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-90247983-4	chr11	90247878	90248078	+	822.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1498.0	NM_026178	67468.0	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-154551908-2	chr2	154551808	154552008	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001171640, exon 1 of 1)	5' UTR (NM_001171640, exon 1 of 1)	132.0	NM_001171640	70362.0	Mm.479620	NM_001171640	ENSMUSG00000078129	Actl10	1700007I08Rik	actin-like 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-74904624-3	chr14	74904540	74904740	+	766.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033439, intron 1 of 19)	intron (NM_001033439, intron 1 of 19)	43237.0	NM_001252132	380916.0	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133757534-4	chr4	133757426	133757626	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3915.0	NM_001080819	93760.0	Mm.22478	NM_001080819	ENSMUSG00000007880	Arid1a	1110030E03Rik|BAF250a|Osa1|Smarcf1	AT rich interactive domain 1A (SWI-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-87908985-4	chr10	87908874	87909074	+	992.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111274, intron 2 of 4)	intron (NM_001111274, intron 2 of 4)	47863.0	NM_001111276	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-132323610-4	chr7	132323500	132323700	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6372.0	NM_029935	77590.0	Mm.213582	NM_029935	ENSMUSG00000030930	Chst15	4631426J05Rik|BRAG|GalNAc4S-6ST|GalNAcS-6ST|MAd5|mKIAA0598	carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-103359304-3	chr4	103359235	103359435	+	892.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025909, intron 8 of 8)	intron (NM_025909, intron 8 of 8)	-23165.0	NR_040673	622167.0	Mm.244115	NR_040673	ENSMUSG00000086136	Gm12718	-	predicted gene 12718	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-49754959-3	chr7	49754854	49755054	+	910.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4152.0	NM_001146053	53415.0	Mm.20801	NM_016865	ENSMUSG00000039745	Htatip2	AW111545|Cc3|Tip30	HIV-1 Tat interactive protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-123544597-3	chr1	123544506	123544706	+	800.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199021, intron 5 of 25)	intron (NM_199021, intron 5 of 25)	500953.0	NM_199021	269109.0	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	1.8374254134816	1.3661602515957	1.32815779240331	2.64705884676903	2.68536646475131	2.52647316920377	2.83472374967443	2.89757678473109	1.78926693742418	0.0534508869558081	0.33847839990981
Merged-chr10-128194774-2	chr10	128194751	128194951	+	999.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_001033264, exon 1 of 18)	exon (NM_001033264, exon 1 of 18)	216.0	NM_001285779	216456.0	Mm.30102	NM_001033264	ENSMUSG00000044005	Gls2	A330074B06Rik|AI195532|GA|GLS|Lga	glutaminase 2 (liver, mitochondrial)	protein-coding	3.14936264192324	1.55525892891548	3.04150031055618	3.18396158907281	2.442926253923	1.85596376670588	2.97552342855386	3.20003986473498	-0.29599093719507	0.71879396067247	0.998431161219273
Merged-chr6-116632325-4	chr6	116632243	116632443	+	821.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_178045)	TTS (NM_178045)	-3344.0	NM_026057	67255.0	Mm.18810	NM_026057	ENSMUSG00000059878	Zfp422	2900028O21Rik|AU041373|KOX15|Krox-25-2|Krox-26|Krox25|Krox26|Znf22	zinc finger protein 422	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-55706690-2	chr16	55706590	55706790	+	565.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	115448.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-121383393-2	chr5	121383293	121383493	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359947, intron 2 of 11)	intron (NM_001359947, intron 2 of 11)	2016.0	NM_001359947	231712.0	Mm.20488	NM_172275	ENSMUSG00000042726	Trafd1	1110008K06Rik|Fln29	TRAF type zinc finger domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-81588067-4	chr18	81587955	81588155	+	811.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	404025.0	NR_039589	100628596.0		NR_039589	ENSMUSG00000093036	Mir5127	mmu-mir-5127|mu-mir-5127	microRNA 5127	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-112674225-3	chr13	112674120	112674320	+	903.7999880000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178746, intron 2 of 14)	intron (NM_178746, intron 2 of 14)	13454.0	NM_178746	268706.0	Mm.40834	NM_175376	ENSMUSG00000047789	Slc38a9	4833412L08Rik|6720411P22Rik|9130023D20Rik|9430067K09Rik|A730092C09	solute carrier family 38, member 9	protein-coding	2.35381701930025	4.12456452050488	1.49841482871987	2.63640365133374	3.42509517839559	3.94785816514332	2.6043886875001	2.51462978059507	0.372037076948537	0.649826452547726	0.985422869512088
Merged-chr3-95649932-2	chr3	95649832	95650032	+	658.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-8789.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80171126-4	chr10	80171045	80171245	+	734.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007705, exon 7 of 7)	3' UTR (NM_007705, exon 7 of 7)	-1799.0	NM_027207	69770.0	Mm.302754	NM_027207	ENSMUSG00000035595	1600002K03Rik	-	RIKEN cDNA 1600002K03 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-44770000-2	chr16	44769900	44770100	+	549.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021325, intron 1 of 6)	intron (NM_021325, intron 1 of 6)	4264.0	NM_021325	57781.0	Mm.416152	NM_021325	ENSMUSG00000022667	Cd200r1	CD200R|Mox2r|OX2R	CD200 receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-79940915-4	chr10	79940804	79941004	+	974.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001288625, intron 3 of 8)	intron (NM_001288625, intron 3 of 8)	13563.0	NM_001288625	13496.0	Mm.301282	NM_007880	ENSMUSG00000019564	Arid3a	Bright|Dri1|Dril1	AT rich interactive domain 3A (BRIGHT-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141363372-3	chr4	141363298	141363498	+	885.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4794.0	NM_001085513	277743.0	Mm.294614	NM_001085513	ENSMUSG00000006218	Fam131c	Gm693	family with sequence similarity 131, member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-38753276-2	chr16	38753176	38753376	+	760.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_152434, intron 2 of 6)	intron (NR_152434, intron 2 of 6)	11017.0	NM_001285793	56375.0	Mm.182377	NM_019804	ENSMUSG00000022793	B4galt4	9130402O08Rik|B4galt-IV|b4Gal-T4|beta4Gal-T4|beta4GalT-IV	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-139197152-1	chr4	139197052	139197252	+	729.0	f0_balb.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	3041.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-129653904-2	chr7	129653804	129654004	+	814.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	62041.0	NM_172255	207425.0	Mm.229323	NM_172255	ENSMUSG00000042055	Wdr11	2900055P10Rik|AW489876|Brwd2|mKIAA1351	WD repeat domain 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-13827572-4	chr9	13827474	13827674	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310721)	promoter-TSS (NM_001310721)	-142.0	NM_001358259	72826.0	Mm.246174	NM_176836	ENSMUSG00000037808	Fam76b	2810485I05Rik|C78303	family with sequence similarity 76, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69432840-2	chr11	69432740	69432940	+	551.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081330, intron 73 of 85)	intron (NM_001081330, intron 73 of 85)	-19165.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-97610131-4	chr3	97610011	97610211	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026539)	promoter-TSS (NM_026539)	79.0	NM_026539	68058.0	Mm.31761	NM_026539	ENSMUSG00000028089	Chd1l	4432404A22Rik|Alc1|Snf2p	chromodomain helicase DNA binding protein 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-14582187-1	chr15	14582087	14582287	+	544.0	f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	-1408512.0	NM_007666	12563.0	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	0.120285827114685	0.136819581453879	0.131388568207288	0.127207955088024	0.584301947611735	0.620088998966986	0.578260782292493	0.423558163017006	4.06134994225973	0.0405358429283819	1
Merged-chr8-79158278-2	chr8	79158178	79158378	+	646.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001294279, intron 8 of 14)	MER20|DNA|hAT-Charlie	90305.0	NM_026315	67687.0	Mm.178707	NM_026315	ENSMUSG00000031682	1700011L22Rik	-	RIKEN cDNA 1700011L22 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-107293402-4	chr8	107293300	107293500	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133957)	promoter-TSS (NM_133957)	-70.0	NM_018823	54446.0	Mm.390057	NM_018823	ENSMUSG00000003847	Nfat5	AI225870|B130038B15Rik|CAG-8|CAG80|NFATL1|OREBP|TonEBP|mKIAA0827|nfatz	nuclear factor of activated T cells 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-23799582-4	chr13	23799486	23799686	+	979.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7441.0	NM_144836	218103.0	Mm.24030	NM_144836	ENSMUSG00000036110	Slc17a2	C730032N17Rik|NPT3	solute carrier family 17 (sodium phosphate), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69578615-2	chr11	69578515	69578715	+	829.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144824, intron 1 of 9)	intron (NM_144824, intron 1 of 9)	709.0	NM_144824	216853.0	Mm.31586	NM_144824	ENSMUSG00000041346	Wrap53	BC021790|Wdr79	WD repeat containing, antisense to Trp53	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-95212964-6	chr4	95212856	95213056	+	988.866699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-160734.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-83856376-2	chr12	83856276	83856476	+	609.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_073564, intron 2 of 12)	intron (NR_073564, intron 2 of 12)	-14018.0	NM_010949	18222.0	Mm.4390	NM_010949	ENSMUSG00000021224	Numb	Nb	NUMB endocytic adaptor protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-3832156-4	chr10	3832050	3832250	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159942, intron 2 of 16)	intron (NM_001159942, intron 2 of 16)	-40517.0	NM_001033253	213783.0	Mm.150831	NM_001033253	ENSMUSG00000040624	Plekhg1	D10Ertd733e|Gm521|mKIAA1209	pleckstrin homology domain containing, family G (with RhoGef domain) member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97149360-2	chr11	97149260	97149460	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198100, intron 1 of 8)	intron (NM_198100, intron 1 of 8)	352.0	NM_198100	73174.0	Mm.27882	NM_198100	ENSMUSG00000038517	Tbkbp1	3110043L15Rik|ProSAPiP2|SINTBAD	TBK1 binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101580044-4	chr11	101579958	101580158	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008676, intron 23 of 23)	intron (NM_008676, intron 23 of 23)	-2184.0	NM_001359326	217203.0	Mm.280559	NM_144830	ENSMUSG00000034947	Tmem106a	0610008L10Rik|AI043106|BC022145	transmembrane protein 106A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-133638243-3	chr7	133638194	133638394	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178115, intron 1 of 24)	CpG	619.0	NM_178115	214764.0	Mm.174044	NM_145995	ENSMUSG00000039990	Edrf1	2700050L05Rik|AU022667|AW558805	erythroid differentiation regulatory factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171562910-1	chr1	171562810	171563010	+	862.0	f0_balb.idr	intron (NM_018729, intron 1 of 8)	intron (NM_018729, intron 1 of 8)	3717.0	NM_018729	18106.0	Mm.2299	NM_018729	ENSMUSG00000004709	Cd244	2B4|C9.1|F730046O15Rik|Ly90|NAIL|NKR2B4|Nmrk|SLAMF4	CD244 natural killer cell receptor 2B4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-132736238-3	chr7	132736151	132736351	+	849.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347630, intron 3 of 3)	intron (NM_001347630, intron 3 of 3)	40665.0	NM_001347630	77938.0	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105567611-2	chr8	105567511	105567711	+	744.5	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_007427, exon 2 of 5)	5' UTR (NM_007427, exon 2 of 5)	690.0	NM_007427	11604.0	Mm.441696	NM_007427	ENSMUSG00000005705	Agrp	Agrt|Art	agouti related neuropeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-46376522-4	chr6	46376426	46376626	+	823.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004357, intron 11 of 23)	intron (NM_001004357, intron 11 of 23)	-867870.0	NM_025771	66797.0	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-81529101-4	chr7	81528999	81529199	+	936.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_035501)	promoter-TSS (NR_035501)	-817.0	NR_035501	100316717.0		NR_035501	ENSMUSG00000104618	Mir1839	mir-1839|mmu-mir-1839	microRNA 1839	ncRNA	0.962029859712984	0.484328537283483	1.18205355277206	0.468847683454765	0.973015386874625	0.486286919651308	1.19519893119685	0.47003132969656	0.0412759403059419	0.981359112734021	1
Merged-chr6-91720114-2	chr6	91720014	91720214	+	621.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009320, intron 2 of 14)	intron (NM_009320, intron 2 of 14)	36047.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-86569893-2	chr11	86569793	86569993	+	848.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	14265.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-34781144-2	chr6	34781044	34781244	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178630, intron 1 of 18)	intron (NM_178630, intron 1 of 18)	712.0	NM_001289656	76223.0	Mm.150047	NM_178630	ENSMUSG00000038836	Agbl3	2900053G10Rik|4930431N21Rik|6530406M24Rik|CCP3	ATP/GTP binding protein-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135675046-2	chr5	135674946	135675146	+	660.125	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14099.0	NM_008898	18984.0	Mm.3863	NM_008898	ENSMUSG00000005514	Por	4933424M13Rik|CPR|CYPOR|P450R	P450 (cytochrome) oxidoreductase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-41484348-3	chr12	41484233	41484433	+	834.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271708, intron 1 of 2)	intron (NM_001271708, intron 1 of 2)	1724.0	NM_001271708	16981.0	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-119504328-4	chr1	119504235	119504435	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022327, intron 1 of 4)	intron (NM_022327, intron 1 of 4)	447.0	NM_022327	64143.0	Mm.27832	NM_022327	ENSMUSG00000004451	Ralb	5730472O18Rik	v-ral simian leukemia viral oncogene B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-66077104-4	chr17	66077006	66077206	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001025572)	promoter-TSS (NM_001025572)	-60.0	NM_001025572	106585.0	Mm.34706	NM_001025572	ENSMUSG00000034647	Ankrd12	2900001A12Rik|AI447928|ANCO-2|AV347965|GAC-1|mKIAA0874	ankyrin repeat domain 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-26580531-2	chr16	26580431	26580631	+	913.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-1174.0	NM_001159318	16180.0	Mm.253424	NM_008364	ENSMUSG00000022514	Il1rap	6430709H04Rik|AI255955|AV239853|IL-1RAcP	interleukin 1 receptor accessory protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70585455-4	chr8	70585342	70585542	+	879.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007924, intron 7 of 11)	intron (NM_007924, intron 7 of 11)	-9039.0	NM_023627	71780.0	Mm.29357	NM_023627	ENSMUSG00000019139	Isyna1	1300017C10Rik|AU018670	myo-inositol 1-phosphate synthase A1	protein-coding	1.20400839281264	0.772911033691879	1.16523567517566	0.744587443926623	1.3360461782198	1.77196564714448	0.760603576489155	1.970284872554	2.1348932301257	0.132146325249158	0.56910731882715
Merged-chr15-95819830-2	chr15	95819730	95819930	+	701.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 1 of 19)	RMER17B|LTR|ERVK	10242.0	NR_155277	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-74939535-4	chr14	74939443	74939643	+	803.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033439, intron 1 of 19)	intron (NM_001033439, intron 1 of 19)	8334.0	NM_001252132	380916.0	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-110972736-1	chr13	110972636	110972836	+	639.0	f0_balb.idr	Intergenic	Intergenic	-68890.0	NR_131194	102636142.0	Mm.417611	NR_131194		4930526H09Rik	-	RIKEN cDNA 4930526H09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100628769-1	chr11	100628669	100628869	+	614.0	f1_c57bl6.idr	3' UTR (NM_177790, exon 8 of 8)	3' UTR (NM_177790, exon 8 of 8)	5814.0	NM_028024	71966.0	Mm.274734	NM_028024	ENSMUSG00000017837	Nkiras2	2410003M04Rik|4930527H08Rik|D630018G21Rik|KBRAS2	NFKB inhibitor interacting Ras-like protein 2	protein-coding	0.352386414204808	0.601562469460626	0.27210727091237	0.903536248812402	0.0772841586562683	0.0965734696768333	0.0903158177290999	0.0849616513416481	-4.11019937695743	0.0388142423074598	1
Merged-chr2-31036999-2	chr2	31036899	31037099	+	721.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355105, intron 12 of 15)	intron (NM_001355105, intron 12 of 15)	54720.0	NM_028846	74270.0	Mm.346654	NM_028846	ENSMUSG00000026854	Usp20	1700055M05Rik|AI467231|Vdu2	ubiquitin specific peptidase 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-83410407-4	chr15	83410323	83410523	+	997.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358643, intron 1 of 9)	intron (NM_001358643, intron 1 of 9)	22427.0	NM_011862	23970.0	Mm.23978	NM_011862	ENSMUSG00000016664	Pacsin2	AI197433	protein kinase C and casein kinase substrate in neurons 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-27411329-1	chr19	27411229	27411429	+	849.0	f0_c57.idr	intron (NM_177474, intron 13 of 17)	intron (NM_177474, intron 13 of 17)	18579.0	NM_177474	52874.0	Mm.261027	NM_177474	ENSMUSG00000041360	Pum3	1110069H02Rik|AA675048|D19Bwg1357e	pumilio RNA-binding family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5433668-2	chr19	5433568	5433768	+	871.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8524.0	NM_001256515	107242.0	Mm.329658	NM_134149	ENSMUSG00000047423	AI837181	Bles03|N28173	expressed sequence AI837181	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94055126-3	chr10	94055025	94055225	+	648.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053072, intron 2 of 20)	intron (NM_053072, intron 2 of 20)	19124.0	NM_053072	13998.0	Mm.269596	NM_053072	ENSMUSG00000020021	Fgd6	AA123052|Etohd4|ZFYVE24	FYVE, RhoGEF and PH domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76702157-4	chr15	76702068	76702268	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027122, exon 1 of 5)	exon (NM_027122, exon 1 of 5)	626.0	NM_027122	69572.0	Mm.34920	NM_027122	ENSMUSG00000019080	Mfsd3	2310010G13Rik	major facilitator superfamily domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-155065965-4	chr1	155065848	155066048	+	974.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151545, intron 3 of 6)	intron (NR_151545, intron 3 of 6)	17316.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-135154605-4	chr1	135154502	135154702	+	865.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026823, intron 5 of 6)	intron (NM_026823, intron 5 of 6)	7768.0	NM_026823	68724.0	Mm.174998	NM_026823	ENSMUSG00000026426	Arl8a	1110033P22Rik|Arl10b|gie2	ADP-ribosylation factor-like 8A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122369775-3	chr8	122369674	122369874	+	790.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6835.0	NM_001310650	76014.0	Mm.241489	NM_001029993	ENSMUSG00000017478	Zc3h18	1190001B23Rik|5830416A07Rik|Nhn1	zinc finger CCCH-type containing 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-119065657-4	chr10	119065588	119065788	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15189.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	6.32534289225586	5.68787319594939	5.73836951238788	6.2910915054778	6.01975621682252	6.27182125309574	5.61757460627986	6.05099884325916	-0.0476864774299775	0.850502296355758	0.998431161219273
Merged-chr17-86581008-1	chr17	86580908	86581108	+	1000.0	f1_c57bl6.idr	intron (NM_011104, intron 11 of 14)	intron (NM_011104, intron 11 of 14)	-172856.0	NM_010137	13819.0	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	0.883914596293083	0.0276124595408837	0.359993387262634	0.016941938347494	0.509975714261584	0.0289658984267626	0.0229251763738147	0.017755989458655	-1.45405854217203	0.511622939072011	1
Merged-chr5-123047299-2	chr5	123047199	123047399	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347456)	promoter-TSS (NM_001347456)	-283.0	NM_001347456	74890.0	Mm.141383	NM_029112	ENSMUSG00000029477	Morn3	4930438O03Rik	MORN repeat containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-94761535-2	chr11	94761435	94761635	+	711.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001105561)	promoter-TSS (NM_001105561)	-353.0	NM_001105561	217122.0	Mm.24063	NM_183153		Gm11545	A430060F13Rik|C86086	predicted gene 11545	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-45089698-4	chr2	45089597	45089797	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355291, intron 2 of 9)	intron (NM_001355291, intron 2 of 9)	20580.0	NM_001289521	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-99894956-2	chr14	99894856	99895056	+	888.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_010636, intron 6 of 6)	intron (NM_010636, intron 6 of 6)	254840.0	NM_010636	16597.0	Mm.396499	NM_010636	ENSMUSG00000072294	Klf12	2700063E05Rik|AI225908|AI315654|AP-2rep|B130052C06Rik|D530033K05Rik	Kruppel-like factor 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-98761876-2	chr15	98761776	98761976	+	770.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_007478, intron 1 of 4)	intron (NM_007478, intron 1 of 4)	1116.0	NM_001355510	11842.0	Mm.221298	NM_007478	ENSMUSG00000051853	Arf3	5430400P17Rik|AI854770	ADP-ribosylation factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-65381919-3	chr18	65381728	65381928	+	945.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037294, intron 1 of 12)	intron (NM_001037294, intron 1 of 12)	12060.0	NM_001037294	225638.0	Mm.296528	NM_001037294	ENSMUSG00000032845	Alpk2	Gm549|Hak	alpha-kinase 2	protein-coding	1.8562450054289	1.81175664476831	1.18497601978546	1.70707416535317	1.76175511171622	2.31612958621953	2.1374105631462	1.84773298258426	1.07017157939677	0.294881321616171	0.798191705447
Merged-chr1-131246750-6	chr1	131246711	131246911	+	716.638916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1633.0	NM_018750	54354.0	Mm.248291	NM_018750	ENSMUSG00000026430	Rassf5	1300019G20Rik|Maxp1|Nore1|Nore1A|Nore1B|Rapl	Ras association (RalGDS/AF-6) domain family member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-134532594-4	chr5	134532485	134532685	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039162, intron 2 of 15)	intron (NM_001039162, intron 2 of 15)	19849.0	NM_001039162	269713.0	Mm.255138	NM_009990	ENSMUSG00000063146	Clip2	B230327O20|CLIP-115|Clip1|Cyln2|WSCR4|mKIAA0291|wbscr4	CAP-GLY domain containing linker protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-134749459-4	chr4	134749378	134749578	+	800.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145554, intron 6 of 8)	intron (NM_145554, intron 6 of 8)	18526.0	NM_145554	100017.0	Mm.27486	NM_145554	ENSMUSG00000037295	Ldlrap1	AA691260|ARH2|Arh|Arh1|FHCB1|FHCB2	low density lipoprotein receptor adaptor protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-90460502-4	chr3	90460413	90460613	+	765.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008727, intron 7 of 21)	intron (NM_008727, intron 7 of 21)	5353.0	NM_008727	18160.0	Mm.4627	NM_008727	ENSMUSG00000027931	Npr1	AI893888|GC-A|NPR-A|NPRA|Pndr	natriuretic peptide receptor 1	protein-coding	-1.5061220274826	-1.47360709383584	-1.48343987814663	-1.49151681994238	-1.50383953926072	-1.47147628845725	-1.0170701920923	-1.49007105122263	2.15652851593596	0.535359572134045	1
Merged-chr13-107879692-2	chr13	107879592	107879792	+	734.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 2 of 14)	intron (NM_145456, intron 2 of 14)	10372.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-173300933-3	chr2	173300833	173301033	+	878.56665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24400.0	NM_022995	65112.0	Mm.73682	NM_022995	ENSMUSG00000038400	Pmepa1	2210418I02Rik|AW455466|Erg1.2|N4wbp4|Stag1|Tmepai	prostate transmembrane protein, androgen induced 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24502633-2	chr17	24502533	24502733	+	700.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027937, intron 16 of 19)	PB1D10|SINE|Alu	13850.0	NM_027937	268932.0	Mm.70989	NM_027937	ENSMUSG00000033597	Caskin1	3300002N10Rik|C130061I24|C630036E02Rik|mKIAA1306	CASK interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44391648-3	chr9	44391527	44391727	+	755.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_021395, exon 26 of 26)	3' UTR (NM_021395, exon 26 of 26)	-5300.0	NM_001293631	14385.0	Mm.30087	NM_008063	ENSMUSG00000032114	Slc37a4	100043178|G6PT|G6pt1|GSD-1b|mG6PT	solute carrier family 37 (glucose-6-phosphate transporter), member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-167307433-2	chr1	167307333	167307533	+	884.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1237.0	NM_001039483	68944.0	Mm.330045	NM_026881	ENSMUSG00000052428	Tmco1	1190006A08Rik|4930403O06Rik|AA109065|AU022572|ESTM39	transmembrane and coiled-coil domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-17011660-4	chr12	17011562	17011762	+	821.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001201332)	promoter-TSS (NM_001201332)	65.0	NM_001201332	73667.0	Mm.159048	NM_001201332	ENSMUSG00000071398	2410004P03Rik	-	RIKEN cDNA 2410004P03 gene	protein-coding	0.582789434325487	0.618954307057689	1.64408842546167	0.790474259919882	0.904637147643957	0.84738453242536	0.991843315767132	1.42358108404263	0.226756418413281	0.879684208384137	0.998431161219273
Merged-chr16-3929748-3	chr16	3929637	3929837	+	913.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029738, intron 8 of 11)	intron (NM_029738, intron 8 of 11)	20728.0	NM_029738	76779.0	Mm.458921	NM_029738	ENSMUSG00000014232	Cluap1	2310030D15Rik|2610111M03Rik	clusterin associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-79717076-1	chr7	79716976	79717176	+	550.0	f1_c57bl6.idr	Intergenic	RLTR53_Mm|LTR|ERVK	-2890.0	NM_001291222	16576.0	Mm.101633	NM_010626	ENSMUSG00000050382	Kif7	-	kinesin family member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64212812-1	chr5	64212712	64212912	+	939.3333130000001	f0_balb.idr	intron (NM_019636, intron 2 of 19)	intron (NM_019636, intron 2 of 19)	-17545.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32507941-2	chr2	32507841	32508041	+	574.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27418.0	NM_153560	98952.0	Mm.4065	NM_153560	ENSMUSG00000039157	Fam102a	AI426465|C230093N12Rik|Eeig1	family with sequence similarity 102, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-86843171-2	chr12	86843071	86843271	+	560.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41643.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-86591233-2	chr11	86591133	86591333	+	607.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356531, intron 10 of 11)	intron (NM_001356531, intron 10 of 11)	-7075.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-77906919-2	chr9	77906819	77907019	+	931.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-10446.0	NM_134255	68801.0	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45009613-2	chr7	45009473	45009673	+	658.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001008422, intron 6 of 10)	intron (NM_001008422, intron 6 of 10)	2914.0	NR_106021	102466218.0		NR_106021	ENSMUSG00000098839	Mir7054	Gm27557|mmu-mir-7054	microRNA 7054	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3612084-2	chr4	3611984	3612184	+	598.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_054089, intron 12 of 12)	intron (NM_054089, intron 12 of 12)	37205.0	NM_054089	116940.0	Mm.171323	NM_054089	ENSMUSG00000028233	Tgs1	D4Ertd800e|Ncoa6ip|Pimt	trimethylguanosine synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-95699396-4	chr9	95699294	95699494	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR87|LTR|ERVL?	50964.0	NM_001311123	22063.0	Mm.149633	NM_011643	ENSMUSG00000032839	Trpc1	Mtrp1|Trp1|Trrp1	transient receptor potential cation channel, subfamily C, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117369135-2	chr8	117369035	117369235	+	679.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028941, intron 1 of 20)	intron (NM_028941, intron 1 of 20)	19965.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-125395208-2	chr5	125395108	125395308	+	943.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-5191.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-44222060-5	chr12	44221985	44222185	+	895.755554	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045113, exon 1 of 1)	non-coding (NR_045113, exon 1 of 1)	729.0	NR_045113	100039062.0	Mm.490648	NR_045113		Gm2027	-	nuclear assembly factor 1 homolog pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-62337351-4	chr10	62337258	62337458	+	867.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010438, intron 4 of 21)	intron (NM_010438, intron 4 of 21)	3063.0	NM_001146100	15275.0	Mm.196605	NM_010438	ENSMUSG00000037012	Hk1	BB404130|Hk-1|Hk1-s|dea|mHk1-s	hexokinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-45454521-2	chr8	45454421	45454621	+	931.6999509999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43902.0	NM_126166	142980.0	Mm.33874	NM_126166	ENSMUSG00000031639	Tlr3	AI957183	toll-like receptor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-51944990-3	chr1	51944899	51945099	+	849.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29021.0	NM_010863	17912.0	Mm.3390	NM_010863	ENSMUSG00000018417	Myo1b	AA406997|MIH-L|MMIa	myosin IB	protein-coding	1.38578513338626	0.359897224634612	0.34941548990432	0.341206626771914	0.329412920232145	1.08725198916962	1.14646028416973	0.342648641833091	0.332992210326404	0.862453115891055	0.998431161219273
Merged-chr2-167793842-3	chr2	167793773	167793973	+	690.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	102696.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-170176507-3	chr2	170176427	170176627	+	884.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33852.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4214197-4	chr16	4214086	4214286	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001025432)	promoter-TSS (NM_001025432)	-782.0	NM_001025432	12914.0	Mm.132238	NM_001025432	ENSMUSG00000022521	Crebbp	AW558298|CBP|CBP/p300|KAT3A|p300/CBP	CREB binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-86989996-4	chr10	86989844	86990044	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138673, intron 3 of 68)	intron (NM_138673, intron 3 of 68)	17998.0	NM_138673	192188.0	Mm.279611	NM_138673	ENSMUSG00000035459	Stab2	FEEL-2|FELL|MFEEL-2|STAB-2	stabilin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-25949437-1	chr10	25949337	25949537	+	619.0	f1_c57bl6.idr	Intergenic	Intergenic	-112000.0	NR_045349	73803.0	Mm.258921	NR_045349	ENSMUSG00000112444	4930401C15Rik	-	RIKEN cDNA 4930401C15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-99225429-4	chr12	99225311	99225511	+	962.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183186, intron 4 of 5)	intron (NM_183186, intron 4 of 5)	-62603.0	NR_038130	67639.0	Mm.87374	NR_038130	ENSMUSG00000113210	4930474N09Rik	-	RIKEN cDNA 4930474N09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-53689377-4	chr17	53689292	53689492	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028232)	promoter-TSS (NM_028232)	-77.0	NM_028232	72415.0	Mm.153202	NM_028232	ENSMUSG00000023940	Sgo1	3300001M08Rik|C81037|Sgol1	shugoshin 1	protein-coding	7.12279201615874	7.73921826461604	7.38576995374925	7.03810483878881	6.92005766115174	7.22163700617132	7.29569786700079	7.06380815543813	-0.223604155636502	0.223336399609899	0.714791840691861
Merged-chr11-113430318-4	chr11	113430218	113430418	+	983.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027216, intron 5 of 9)	MLT1C|LTR|ERVL-MaLR	135497.0	NM_001166503	69806.0	Mm.341021	NM_027216	ENSMUSG00000041654	Slc39a11	1810074D23Rik	solute carrier family 39 (metal ion transporter), member 11	protein-coding	0.996803372844421	0.698168115624543	0.683057750241963	0.671140905703572	1.00600389408819	1.45933111412273	1.97502447390354	1.46058614834198	3.56158655963028	0.021376797881164	0.187301962739683
Merged-chr5-65867516-4	chr5	65867392	65867592	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081105, intron 1 of 2)	intron (NM_001081105, intron 1 of 2)	3923.0	NM_001081105	74734.0	Mm.20323	NM_001081105	ENSMUSG00000029204	Rhoh	5830400A04Rik|AU019774|Arhh	ras homolog family member H	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-104850710-2	chr12	104850610	104850810	+	557.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001040682, intron 1 of 12)	intron (NM_001040682, intron 1 of 12)	14366.0	NR_104436	94040.0	Mm.244078	NM_053155	ENSMUSG00000021097	Clmn	9330188N17Rik|AI428889|AI788815|mKIAA1188	calmin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-11907740-4	chr6	11907561	11907761	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010886)	promoter-TSS (NM_010886)	-168.0	NM_001362123	75725.0	Mm.212411	NM_029404	ENSMUSG00000029629	Phf14	1110001C23Rik|4932409F11Rik|5730446A07Rik|AA623952|AV297001|mKIAA0783	PHD finger protein 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-70825120-4	chr2	70825037	70825237	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172664, intron 1 of 19)	CpG	343.0	NM_172664	228012.0	Mm.136511	NM_172664	ENSMUSG00000041997	Tlk1	4930545J15Rik	tousled-like kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-154794794-4	chr1	154794661	154794861	+	985.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-68841.0	NM_009782	12290.0	Mm.267517	NM_009782	ENSMUSG00000004110	Cacna1e	A430040I15|BII|Cach6|Cacnl1a6|Cav2.3|Cchra1|alpha1E	calcium channel, voltage-dependent, R type, alpha 1E subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-30918395-2	chr5	30918295	30918495	+	600.666626	f1_balb.idr|f1_c57bl6.idr	exon (NM_133918, exon 4 of 8)	exon (NM_133918, exon 4 of 8)	-3164.0	NM_001310525	16548.0	Mm.22451	NM_008439	ENSMUSG00000029162	Khk	-	ketohexokinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-173220430-2	chr2	173220330	173220530	+	828.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-1508.0	NM_001139519	58203.0	Mm.116687	NM_021394	ENSMUSG00000027514	Zbp1	2010010H03Rik|Dai|Dlm1|mZaDLM	Z-DNA binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120577561-2	chr11	120577461	120577661	+	884.7666630000001	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_133796, exon 6 of 6)	3' UTR (NM_133796, exon 6 of 6)	4059.0	NM_133796	192662.0	Mm.30016	NM_133796	ENSMUSG00000025132	Arhgdia	5330430M07Rik|Gdi-1|Rho-GDI|RhoDGI|RhoGDI-1	Rho GDP dissociation inhibitor (GDI) alpha	protein-coding	0.920880505749157	0.770441924481794	1.0049038665054	1.48278749773256	1.2675627196654	1.27447891462429	2.62699858689593	0.979634540631384	2.07457697184677	0.103511670786917	0.500914100336688
Merged-chr3-79861158-4	chr3	79861057	79861257	+	818.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18495.0	NM_027495	70652.0	Mm.46635	NM_027495	ENSMUSG00000027956	Tmem144	1110057I03Rik|5730537D05Rik	transmembrane protein 144	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-21202295-4	chr5	21202180	21202380	+	954.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153365, intron 3 of 26)	intron (NR_153365, intron 3 of 26)	16013.0	NM_001359877	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-174106773-3	chr2	174106682	174106882	+	859.111145	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3569.0	NM_213733	228961.0	Mm.295629	NM_213733	ENSMUSG00000039263	Npepl1	BC023239|C85514|mKIAA1974	aminopeptidase-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-105284769-2	chr4	105284669	105284869	+	621.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	127422.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-78462449-2	chr10	78462349	78462549	+	935.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_172134, intron 1 of 10)	RMER1B|Other|Other	2499.0	NM_172134	216134.0	Mm.206159	NM_172134	ENSMUSG00000032788	Pdxk	2310036D04Rik|AA119688|C77999	pyridoxal (pyridoxine, vitamin B6) kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-48161982-4	chr9	48161877	48162077	+	966.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR67B|LTR|ERVL	178921.0	NM_030069	78252.0	Mm.31626	NM_030069	ENSMUSG00000032028	Nxpe2	4432416J03Rik|AI323362|Fam55b	neurexophilin and PC-esterase domain family, member 2	protein-coding	1.24088111265702	1.38439068933575	2.11439365610735	1.57675125782948	1.3856221962801	1.82644033695876	0.943434268715118	1.13661194019865	-0.873835233661529	0.4684715133755	0.924409990887115
Merged-chr8-123190950-4	chr8	123190866	123191066	+	998.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007876, intron 1 of 10)	intron (NM_007876, intron 1 of 10)	4731.0	NM_007876	13479.0	Mm.20388	NM_007876	ENSMUSG00000019278	Dpep1	AI327012|MBD	dipeptidase 1 (renal)	protein-coding	3.72224543010072	3.61969862801677	3.89371725319495	3.97485104917498	3.81064554768529	4.11928739297923	4.46850117518947	3.10247230919071	0.212667532507815	0.66789923885055	0.993132800426794
Merged-chr11-44562450-1	chr11	44562350	44562550	+	564.0	f1_balb.idr	intron (NM_028862, intron 10 of 10)	intron (NM_028862, intron 10 of 10)	-23867.0	NR_126460	75389.0	Mm.261421	NR_126460	ENSMUSG00000086501	4930597A21Rik	-	RIKEN cDNA 4930597A21 gene	ncRNA	-1.50874880059862	-1.47511716453926	-1.4852876488768	-1.49364198752927	-1.50638792193216	-0.992828729615453	-1.48298527415345	-1.4921465649048	2.3185461113984	0.50391666537493	1
Merged-chr3-88403663-4	chr3	88403541	88403741	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025928, intron 1 of 4)	(A)n|Simple_repeat|Simple_repeat	6756.0	NM_001310605	67037.0	Mm.36715	NM_025928	ENSMUSG00000028066	Pmf1	2600009M07Rik|AL033286|AW060657	polyamine-modulated factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-25550866-4	chr15	25550774	25550974	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-71676.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-61606097-2	chr8	61605995	61606195	+	803.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001293772, intron 10 of 21)	intron (NM_001293772, intron 10 of 21)	-14926.0	NM_001293774	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	-0.49382476167857	-0.483028131077297	-0.0475805388881397	0.0246783325631788	-0.352958481500286	-0.482225872237632	-0.485797012305122	-0.488833128871086	-2.50408063801868	0.335225697516187	1
Merged-chr10-88146968-4	chr10	88146865	88147065	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027191)	promoter-TSS (NM_027191)	-24.0	NM_029249	75317.0	Mm.179378	NM_029249	ENSMUSG00000035365	Parpbp	4930547N16Rik|AI503644|PARI	PARP1 binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-140963129-4	chr4	140963014	140963214	+	997.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355515, intron 1 of 7)	Lx8|LINE|L1	1843.0	NM_023374	67680.0	Mm.246965	NM_023374	ENSMUSG00000009863	Sdhb	0710008N11Rik	succinate dehydrogenase complex, subunit B, iron sulfur (Ip)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-119778486-4	chr8	119778362	119778562	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028883)	promoter-TSS (NM_028883)	-46.0	NM_028883	74347.0	Mm.358759	NM_028883	ENSMUSG00000034105	Tldc1	4632415K11Rik|Kiaa1609	TBC/LysM associated domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-118843215-3	chr7	118843128	118843328	+	928.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001168220, exon 5 of 5)	3' UTR (NM_001168220, exon 5 of 5)	12385.0	NM_001168220	66356.0	Mm.482278	NM_023197	ENSMUSG00000030980	Knop1	2310008H09Rik|Tsg118	lysine rich nucleolar protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-77972002-4	chr10	77971901	77972101	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2129.0	NM_138301	28240.0	Mm.276762	NM_138301	ENSMUSG00000009292	Trpm2	9830168K16Rik|C79133|LTRPC2|TRPC7|Trp7|Trrp7	transient receptor potential cation channel, subfamily M, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31385445-2	chr14	31385341	31385541	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_001347585, intron 3 of 7)	intron (NM_001347585, intron 3 of 7)	32236.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71981120-1	chr8	71981020	71981220	+	763.0	f1_c57bl6.idr	Intergenic	B3A|SINE|B2	28506.0	NM_024444	72054.0	Mm.160020	NM_024444	ENSMUSG00000003484	Cyp4f18	1810054N16Rik|Cyp4f3|Cypf18	cytochrome P450, family 4, subfamily f, polypeptide 18	protein-coding	2.48535411804065	2.98433355747964	2.88583497607344	2.80613790354254	2.01976983459644	1.8421187120952	2.81500275288407	2.72976881250633	-0.76037803099311	0.323299437332663	0.826128066686915
Merged-chr19-12735182-3	chr19	12735089	12735289	+	857.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30443.0	NM_170786	12803.0	Mm.290924	NM_053007	ENSMUSG00000079415	Cntf	AI429687	ciliary neurotrophic factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-104440287-2	chr11	104440187	104440387	+	744.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359634, intron 2 of 14)	intron (NM_001359634, intron 2 of 14)	2004.0	NM_001081045	76719.0	Mm.136418	NM_001081045	ENSMUSG00000018412	Kansl1	1700081L11Rik|9430041J06Rik|mKIAA1267	KAT8 regulatory NSL complex subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-57776819-4	chr10	57776732	57776932	+	901.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8091.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135193038-4	chr4	135192939	135193139	+	877.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	72394.0	NM_019732	12399.0	Mm.378894	NM_019732	ENSMUSG00000070691	Runx3	AML2|Cbfa3|Pebp2a3	runt related transcription factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-104434992-1	chr5	104434892	104435092	+	626.0	f0_balb.idr	promoter-TSS (NM_001204202)	promoter-TSS (NM_001204202)	-119.0	NM_001204201	20750.0	Mm.288474	NM_009263	ENSMUSG00000029304	Spp1	2AR|Apl-1|BNSP|BSPI|Bsp|ETA-1|Eta|OP|Opn|Opnl|Ric|Spp-1	secreted phosphoprotein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16820546-4	chr7	16820443	16820643	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039878, intron 1 of 17)	intron (NM_001039878, intron 1 of 17)	-3811.0	NM_173430	243853.0	Mm.39703	NM_173430	ENSMUSG00000048920	Fkrp	A830029B19Rik|AI842067|AI847300|LGMD1I|MDC1C	fukutin related protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-28419001-3	chr13	28418867	28419067	+	755.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	276483.0	NM_023746	28078.0	Mm.155058	NM_023746	ENSMUSG00000017064	Prl5a1	1600013P04Rik|D13Wsu14e|Ghd24|PLP-L|Prlpl	prolactin family 5, subfamily a, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-124711088-4	chr4	124710996	124711196	+	950.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-3765.0	NM_029157	75062.0	Mm.25779	NM_029157	ENSMUSG00000028902	Sf3a3	4930512K19Rik|60kDa	splicing factor 3a, subunit 3	protein-coding	3.35838236088242	2.44696958861261	1.51831959608881	2.29446091781776	3.16896177630388	2.74683666100835	3.06030590912041	2.78583509083335	0.663352302740684	0.404075114933192	0.889123345574356
Merged-chr7-97822084-3	chr7	97821987	97822187	+	791.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357364, intron 1 of 14)	intron (NM_001357364, intron 1 of 14)	-20852.0	NM_001357363	18479.0	Mm.260227	NM_011035	ENSMUSG00000030774	Pak1	AW045634|PAK-1|Paka	p21 (RAC1) activated kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-57550932-2	chr16	57550895	57551095	+	912.7666630000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177871, intron 1 of 1)	intron (NM_001177871, intron 1 of 1)	1753.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	1.01591611285179	1.28246549285622	0.880713623440466	1.66053096409362	1.58155579643501	1.44355483814991	1.39376148715246	1.21517277720826	0.636900328954962	0.614308462701733	0.977250439470701
Merged-chr12-12246591-1	chr12	12246491	12246691	+	888.0	f1_c57bl6.idr	Intergenic	Intergenic	-15548.0	NM_029758	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	-1.02623923925007	-0.0785174723847883	-1.01664411116562	-1.02119558009008	-1.02548487198161	-0.999699361692546	-1.0134913975053	-1.0206685408436	-3.25251655617119	0.303463431741018	1
Merged-chr10-80153808-2	chr10	80153708	80153908	+	676.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001305799, intron 4 of 7)	intron (NM_001305799, intron 4 of 7)	4126.0	NM_001305799	59090.0	Mm.143813	NM_021565	ENSMUSG00000035621	Midn	3000003C15Rik	midnolin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-151864714-1	chr3	151864614	151864814	+	550.0	f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	-27186.0	NM_008966	19220.0	Mm.331442	NM_008966	ENSMUSG00000028036	Ptgfr	AI957154|PGF|fp	prostaglandin F receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89219944-2	chr3	89219844	89220044	+	692.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_013691, exon 9 of 23)	exon (NM_013691, exon 9 of 23)	3356.0	NR_149740	21827.0	Mm.2114	NM_013691	ENSMUSG00000028047	Thbs3	TSP3|Thbs-3	thrombospondin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-65528083-4	chr6	65527983	65528183	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-62315.0	NM_001001495	414084.0	Mm.117558	NM_001001495	ENSMUSG00000044162	Tnip3	9030611K07Rik|ABIN-3|LIND	TNFAIP3 interacting protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133501575-2	chr4	133501475	133501675	+	741.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3025.0	NM_001081156	69539.0	Mm.151594	NM_001081156	ENSMUSG00000056596	Trnp1	2300002D11Rik|Trnp	TMF1-regulated nuclear protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-180291020-1	chr2	180290920	180291120	+	548.0	f1_c57bl6.idr	Intergenic	Intergenic	-1141.0	NM_173031	271887.0	Mm.246640	NM_173031	ENSMUSG00000038980	Rbbp8nl	4732416F18	RBBP8 N-terminal like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-10539710-2	chr16	10539610	10539810	+	834.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021428, intron 1 of 1)	intron (NM_021428, intron 1 of 1)	3344.0	NM_021428	58239.0	Mm.353006	NM_021428	ENSMUSG00000038055	Dexi	1810029J14Rik|AI836170|AW413143|D16Bwg0586e|Myle	dexamethasone-induced transcript	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-34785298-2	chr4	34785198	34785398	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6932.0	NM_025471	66291.0	Mm.28071	NM_025471	ENSMUSG00000028295	Smim8	1810030N24Rik|2810406B13Rik	small integral membrane protein 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-78589760-2	chr9	78589701	78589901	+	871.583374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1756.0	NM_001276452	235504.0	Mm.46932	NM_172773	ENSMUSG00000049624	Slc17a5	4631416G20Rik|4732491M05|AST|ISSD|NSD|SD|SIALIN|SIASD|SLD	solute carrier family 17 (anion/sugar transporter), member 5	protein-coding	-1.25472594574093	-1.22821654753991	-1.23846893958796	-1.24689055967257	-0.984157887957643	-1.22599481141423	-0.918028007241226	-1.24538309370391	2.39436828104689	0.472022849635853	1
Merged-chr2-35441693-3	chr2	35441592	35441792	+	762.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010283, intron 1 of 8)	intron (NM_010283, intron 1 of 8)	19757.0	NM_001308299	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-45906461-4	chr9	45906374	45906574	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001281934)	promoter-TSS (NM_001281934)	-95.0	NM_001281934	18554.0	Mm.3255	NM_008794	ENSMUSG00000035382	Pcsk7	AA959856|PC7|SPC7	proprotein convertase subtilisin/kexin type 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-16114497-4	chr9	16114407	16114607	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080814, intron 2 of 24)	intron (NM_001080814, intron 2 of 24)	-239951.0	NM_145712	244701.0	Mm.222631	NM_145712	ENSMUSG00000050901	Mtnr1b	Mel-1B-R|Mel1b|Mt2	melatonin receptor 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102690245-6	chr12	102690200	102690400	+	833.990723	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172584, intron 1 of 9)	intron (NM_172584, intron 1 of 9)	-5280.0	NR_035457	100316812.0		NR_035457	ENSMUSG00000089324	Mir1936	mir-1936|mmu-mir-1936	microRNA 1936	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-40840625-4	chr4	40840513	40840713	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022305, intron 1 of 5)	intron (NM_022305, intron 1 of 5)	9525.0	NR_039584	100628614.0		NR_039584	ENSMUSG00000096377	Mir5123	mmu-mir-5123|mu-mir-5123	microRNA 5123	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-21384023-2	chr16	21383923	21384123	+	641.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39095.0	NM_001285893	209018.0	Mm.235683	NM_145948	ENSMUSG00000033653	Vps8	AI315068|AU040738|mKIAA0804	VPS8 CORVET complex subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-23181935-2	chr10	23181835	23182035	+	555.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010167, intron 3 of 18)	intron (NM_010167, intron 3 of 18)	167955.0	NM_001347372	14051.0	Mm.332128	NM_010167	ENSMUSG00000010461	Eya4	B130023L16Rik	EYA transcriptional coactivator and phosphatase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-65744685-3	chr15	65744585	65744785	+	900.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42335.0	NM_133766	76740.0	Mm.260647	NM_133766	ENSMUSG00000015002	Efr3a	A130089M23Rik|BB071175|C76891|C920006C10Rik|D030063F01Rik|mKIAA0143	EFR3 homolog A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-147437567-3	chr5	147437501	147437701	+	893.744446	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028291, intron 1 of 18)	intron (NM_028291, intron 1 of 18)	7445.0	NM_028291	72587.0	Mm.320469	NM_028291	ENSMUSG00000029647	Pan3	2700050F09Rik|A430027N15Rik|AU014670	PAN3 poly(A) specific ribonuclease subunit	protein-coding	-0.305770787385555	-0.431528756769424	-0.43520237000658	-0.438027526321441	0.106568203733011	-0.430698832413904	0.0121091415349382	-0.437534554135387	2.62418721904243	0.305275219196703	1
Merged-chr7-110167936-1	chr7	110167836	110168036	+	561.0	f1_balb.idr	Intergenic	B4A|SINE|B4	45877.0	NM_009516	22390.0	Mm.287173	NM_009516	ENSMUSG00000031016	Wee1	Wee1A	WEE 1 homolog 1 (S. pombe)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-37228089-4	chr10	37228009	37228209	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-89183.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-110284281-2	chr7	110284181	110284381	+	688.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_009302)	TTS (NM_009302)	62578.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-49778754-3	chr7	49778653	49778853	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133740, intron 2 of 15)	CpG-13170	395.0	NM_133740	71974.0	Mm.33202	NM_133740	ENSMUSG00000030505	Prmt3	2010005E20Rik|2410018A17Rik|AL033309|Hrmt1l3	protein arginine N-methyltransferase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-82834162-3	chr11	82834100	82834300	+	788.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001164570, exon 2 of 8)	5' UTR (NM_001164570, exon 2 of 8)	-5157.0	NM_026097	67338.0	Mm.341608	NM_026097	ENSMUSG00000020696	Rffl	1700051E09Rik|4930516L10Rik|BG080975|Carp2	ring finger and FYVE like domain containing protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-4491134-2	chr2	4491034	4491234	+	641.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 4 of 23)	intron (NM_001177843, intron 4 of 23)	-68620.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-29278722-4	chr6	29278608	29278808	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2433.0	NM_001101486	245884.0	Mm.33683	NM_001101486	ENSMUSG00000079652	Fam71f2	AI507611|GARI	family with sequence similarity 71, member F2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-18713690-2	chr19	18713590	18713790	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177640, intron 1 of 1)	CpG	454.0	NM_177640	225995.0	Mm.28101	NM_177640	ENSMUSG00000047044	D030056L22Rik	-	RIKEN cDNA D030056L22 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-70881543-2	chr16	70881443	70881643	+	569.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-249533.0	NR_040561	70972.0	Mm.399391	NR_040561		4931420L22Rik	-	RIKEN cDNA 4931420L22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-55182536-4	chr6	55182442	55182642	+	850.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-7552.0	NM_009349	21743.0	Mm.299	NM_009349	ENSMUSG00000003477	Inmt	Temt	indolethylamine N-methyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111451614-2	chr12	111451514	111451714	+	590.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009396, intron 11 of 11)	MIRb|SINE|MIR	8953.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-6484264-2	chr2	6484164	6484364	+	887.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	131528.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126693803-3	chr8	126693682	126693882	+	851.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-100346.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	1.24433559608396	2.73911151030348	2.93886988155615	2.7632740552595	1.90991103249884	3.31227243081562	1.36292847793246	3.29558521080326	0.30912187471555	0.749326090043894	0.998431161219273
Merged-chr11-95383873-1	chr11	95383773	95383973	+	608.0	f1_balb.idr	promoter-TSS (NM_001357797)	promoter-TSS (NM_001357797)	-983.0	NM_016752	110172.0	Mm.4593	NM_016752	ENSMUSG00000020873	Slc35b1	UGTrel1|Ugalt2	solute carrier family 35, member B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-119293103-4	chr4	119292971	119293171	+	997.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011732, intron 2 of 7)	intron (NM_011732, intron 2 of 7)	1442.0	NM_011732	22608.0	Mm.258204	NM_011732	ENSMUSG00000028639	Ybx1	1700102N10Rik|C79409|EF1A|MSY1|Nsep1|YB-1|dbpB|mYB-1a	Y box protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-101609510-2	chr3	101609410	101609610	+	556.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4803.0	NM_144900	11928.0	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-51341291-4	chr3	51341196	51341396	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291059)	promoter-TSS (NM_001291059)	-652.0	NM_023502	69257.0	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-25634319-4	chr15	25634219	25634419	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019472, intron 1 of 40)	intron (NM_019472, intron 1 of 40)	11769.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-104030945-3	chr3	104030860	104031060	+	856.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133853, intron 15 of 21)	intron (NM_133853, intron 15 of 21)	-62644.0	NR_030676	100125931.0	Mm.400392	NR_030676	ENSMUSG00000089998	Phtf1os	A130049A11Rik	putative homeodomain transcription factor 1, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-98720440-4	chr7	98720346	98720546	+	890.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17199.0	NM_028410	72981.0	Mm.4428	NM_028410	ENSMUSG00000030753	Thap12	2900052B10Rik|Dap4|Prkrir|Rpkrir	THAP domain containing 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-94172608-4	chr8	94172491	94172691	+	988.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008630)	promoter-TSS (NM_008630)	-27.0	NM_008630	17750.0	Mm.147226	NM_008630	ENSMUSG00000031762	Mt2	AA409533|MT-II|Mt-2	metallothionein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36516785-2	chr18	36516645	36516845	+	985.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010415)	promoter-TSS (NM_010415)	-940.0	NM_010415	15200.0	Mm.289681	NM_010415	ENSMUSG00000024486	Hbegf	AW047313|Dtr|Dts|Hegfl	heparin-binding EGF-like growth factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-54089059-4	chr11	54088983	54089183	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11841.0	NM_001136076	18452.0	Mm.3705	NM_011031	ENSMUSG00000018906	P4ha2	AA407196|C76437|P4hl	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-40277832-4	chr12	40277722	40277922	+	981.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB7|LINE|L1	54458.0	NR_045157	629820.0	Mm.435540	NR_045157	ENSMUSG00000035983	Gm7008	EG629820	predicted gene 7008	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-30033331-4	chr19	30033223	30033423	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144873, intron 1 of 15)	intron (NM_144873, intron 1 of 15)	2810.0	NM_144873	109113.0	Mm.313364	NM_144873	ENSMUSG00000024817	Uhrf2	2310065A22Rik|AI426270|AW214556|D130071B19Rik|Nirf	ubiquitin-like, containing PHD and RING finger domains 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-168557050-4	chr2	168556966	168557166	+	986.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037177, intron 3 of 6)	intron (NM_001037177, intron 3 of 6)	33299.0	NM_001291178	18019.0	Mm.116802	NM_010899	ENSMUSG00000027544	Nfatc2	AI607462|NF-ATc2|NF-ATp|NFAT1|NFAT1-D|Nfatp	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-24617511-4	chr4	24617411	24617611	+	972.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001033531, exon 10 of 10)	exon (NM_001033531, exon 10 of 10)	121060.0	NM_199467	212377.0	Mm.120919	NM_199467	ENSMUSG00000045751	Mms22l	F730047E07Rik|Gm134	MMS22-like, DNA repair protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-113309292-2	chr6	113309192	113309392	+	660.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001282128, intron 1 of 13)	intron (NM_001282128, intron 1 of 13)	2155.0	NM_001282126	78783.0	Mm.356059	NM_030178	ENSMUSG00000001632	Brpf1	4833438B11Rik|4930540D11Rik|Brpf2	bromodomain and PHD finger containing, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-67366028-3	chr18	67365928	67366128	+	755.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007702, intron 3 of 4)	L2|LINE|L2	-21925.0	NR_033214	338360.0	Mm.441590	NR_033214	ENSMUSG00000046415	B430212C06Rik	-	RIKEN cDNA B430212C06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-151734210-2	chr5	151734110	151734310	+	847.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-83002.0	NM_027009	69263.0	Mm.12553	NM_027009	ENSMUSG00000033970	Rfc3	2810416I22Rik|38kDa|AU022547|Recc3	replication factor C (activator 1) 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-104731506-2	chr2	104731388	104731588	+	664.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144804, intron 1 of 8)	B3|SINE|B2	11313.0	NM_144804	211896.0	Mm.288805	NM_144804	ENSMUSG00000027173	Depdc7	AV216087	DEP domain containing 7	protein-coding	0.359923061311302	0.376653815838294	1.05705886102183	0.366887397796057	0.711520913391522	0.377907535445621	0.798886513460924	0.763514192108398	0.468185662095648	0.803572349771828	1
Merged-chr16-75921136-2	chr16	75921036	75921236	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11870.0	NM_023380	67742.0	Mm.131406	NM_023380	ENSMUSG00000022876	Samsn1	4930571B16Rik|930571B16Rik|Hacs1|SLy2	SAM domain, SH3 domain and nuclear localization signals, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-57705165-5	chr15	57704972	57705172	+	684.7363280000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199449, intron 1 of 3)	intron (NM_199449, intron 1 of 3)	10405.0	NM_199449	387609.0	Mm.36557	NM_199449	ENSMUSG00000071757	Zhx2	Afr-1|Afr1|Raf|mKIAA0854	zinc fingers and homeoboxes 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167345200-4	chr2	167345080	167345280	+	780.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019835, intron 1 of 8)	intron (NM_019835, intron 1 of 8)	3998.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-23256712-2	chr8	23256636	23256836	+	1000.0	f0_balb.idr|f0_c57.idr	exon (NM_001042484, exon 2 of 6)	exon (NM_001042484, exon 2 of 6)	344.0	NM_020585	57437.0	Mm.196269	NM_020585	ENSMUSG00000015341	Golga7	AB041568|C130038N16Rik|GCP16|GOLGA3AP1|HSPC041|R75586	golgi autoantigen, golgin subfamily a, 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-11312675-1	chr8	11312575	11312775	+	644.0	f0_balb.idr	promoter-TSS (NM_009932)	promoter-TSS (NM_009932)	-130.0	NM_009932	12827.0	Mm.181021	NM_009932	ENSMUSG00000031503	Col4a2	Col4a-2	collagen, type IV, alpha 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-123333267-2	chr7	123333167	123333367	+	863.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001316713, intron 1 of 19)	intron (NM_001316713, intron 1 of 19)	36648.0	NM_001122643	70497.0	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-34912360-2	chr6	34912260	34912460	+	623.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-1529.0	NM_001013366	101240.0	Mm.152120	NM_001013366	ENSMUSG00000058486	Wdr91	9530020G05Rik|AI987683|AU018665	WD repeat domain 91	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-11554532-1	chr2	11554432	11554632	+	543.0	f0_balb.idr	promoter-TSS (NM_001177758)	promoter-TSS (NM_001177758)	-603.0	NM_001177758	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-127550644-1	chr3	127550544	127550744	+	973.0	f1_c57bl6.idr	intron (NM_138593, intron 1 of 12)	intron (NM_138593, intron 1 of 12)	2705.0	NM_138593	28036.0	Mm.291032	NM_138593	ENSMUSG00000027968	Larp7	C330027G06Rik|D3Wsu161e	La ribonucleoprotein domain family, member 7	protein-coding	1.76065669545258	2.18521247596073	0.886112964196798	1.26530797486908	0.851255940319994	0.908205169083707	1.61642140242415	1.78526586405269	-0.831740853086915	0.538926893145188	0.954403851908463
Merged-chr5-67532535-4	chr5	67532442	67532642	+	902.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	68644.0	NR_015582	320479.0	Mm.387187	NR_015582	ENSMUSG00000107385	C330024D21Rik	-	RIKEN cDNA C330024D21 gene	ncRNA	2.67450630803446	2.88902449379014	2.41803593248595	3.21417080818948	3.26149762697683	2.79347774484268	2.27745191981238	2.62023540808853	-0.0679449939285146	0.923966015340528	0.998431161219273
Merged-chr1-135110319-3	chr1	135110215	135110415	+	852.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007955, exon 32 of 38)	exon (NM_007955, exon 32 of 38)	-5039.0	NM_001033409	329252.0	Mm.279594	NM_001033409	ENSMUSG00000042793	Lgr6	A530037C04Rik|D830026M09	leucine-rich repeat-containing G protein-coupled receptor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-98948151-2	chr7	98948051	98948251	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 12 of 14)	RMER19A|LTR|ERVK	109306.0	NM_001285795	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-154854913-1	chr4	154854813	154855013	+	580.0	f0_balb.idr	Intergenic	Intergenic	-1287.0	NM_172878	242800.0	Mm.72944	NM_172878	ENSMUSG00000046637	Ttc34	4932418L02|B230396O12Rik	tetratricopeptide repeat domain 34	protein-coding	0.0750637894071755	-0.0507950352960514	-0.055891522998359	-0.0598214953625776	0.410264061780944	0.145115695880818	-0.0547677349135485	0.657165086370821	3.11506294097117	0.14795043516469	1
Merged-chr12-86947301-4	chr12	86947200	86947400	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289432)	promoter-TSS (NM_001289432)	-43.0	NM_173735	217732.0	Mm.22337	NM_173735	ENSMUSG00000034157	Cipc	2310044G17Rik|AI842544|AI853744|Kiaa1737|mKIAA1737	CLOCK interacting protein, circadian	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-38433738-2	chr16	38433638	38433838	+	644.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134102)	promoter-TSS (NM_134102)	-593.0	NM_134102	85031.0	Mm.279805	NM_134102	ENSMUSG00000002847	Pla1a	AA986889|Ps-pla1|Pspla1	phospholipase A1 member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-31157183-4	chr7	31157065	31157265	+	965.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5193.0	NR_046062	100038516.0	Mm.387223	NR_046062	ENSMUSG00000100985	Gm10640	EG668322	predicted gene 10640	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-94589574-4	chr11	94589464	94589664	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153807, intron 1 of 15)	intron (NM_153807, intron 1 of 15)	12222.0	NM_153807	264895.0	Mm.386885	NM_153807	ENSMUSG00000076435	Acsf2	-	acyl-CoA synthetase family member 2	protein-coding	7.15917431251105	6.99884928299346	7.48876834442258	7.07538082104797	7.19257494285065	6.92104240113524	7.63191605906313	7.25068611176684	0.0834132593838852	0.649870286530691	0.985422869512088
Merged-chr11-11742914-4	chr11	11742817	11743017	+	736.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301865, intron 3 of 6)	Tigger16a|DNA|TcMar-Tigger	52740.0	NM_001301863	22778.0	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134240584-1	chr6	134240484	134240684	+	552.0	f0_balb.idr	intron (NM_001303102, intron 5 of 8)	intron (NM_001303102, intron 5 of 8)	-155745.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-128221154-4	chr7	128221066	128221266	+	962.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14800.0	NM_009943	12862.0	Mm.43824	NM_009943	ENSMUSG00000030785	Cox6a2	CoxVIaH|VIaH	cytochrome c oxidase subunit VIa polypeptide 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171118430-4	chr1	171118335	171118535	+	911.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3226.0	NM_001081275	75472.0	Mm.32760	NM_029301	ENSMUSG00000026649	Cfap126	1700009P17Rik|AV282292|Flattop|Fltp	cilia and flagella associated protein 126	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-72553223-2	chr5	72553123	72553323	+	704.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153351, intron 3 of 21)	intron (NR_153351, intron 3 of 21)	6422.0	NM_001359837	100978.0	Mm.187453	NM_133921	ENSMUSG00000072889	Nfxl1	1700012H24Rik|AW538212|D430033A06Rik|DNABF|GCF|Gm1058|TCF9	nuclear transcription factor, X-box binding-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-144965212-4	chr5	144965130	144965330	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038627, intron 1 of 17)	CpG	600.0	NM_001038627	75788.0	Mm.27735	NM_029438	ENSMUSG00000038780	Smurf1	4930431E10Rik|mKIAA1625	SMAD specific E3 ubiquitin protein ligase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-22551525-2	chr16	22551425	22551625	+	786.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346673, intron 18 of 23)	intron (NM_001346673, intron 18 of 23)	-19341.0	NR_106170	102465887.0		NR_106170	ENSMUSG00000099071	Mir8095	Gm27566|mmu-mir-8095	microRNA 8095	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-25076273-3	chr9	25076192	25076392	+	955.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	75489.0	NM_020586	80517.0	Mm.142843	NM_020586	ENSMUSG00000008429	Herpud2	5031400M07Rik|AB041580	HERPUD family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-33223018-2	chr5	33222918	33223118	+	840.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4|LINE|L1	-4780.0	NM_133903	100689.0	Mm.34694	NM_133903	ENSMUSG00000037379	Spon2	2310045I24Rik|AI504350|M-spondin|Mindin|Mspondin	spondin 2, extracellular matrix protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30093159-2	chr2	30093059	30093259	+	703.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037762, intron 1 of 4)	intron (NM_001037762, intron 1 of 4)	476.0	NM_025428	66220.0	Mm.22538	NM_025428	ENSMUSG00000015335	Zdhhc12	1190004A01Rik	zinc finger, DHHC domain containing 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-38949217-4	chr6	38949124	38949324	+	961.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 2 of 12)	intron (NM_011539, intron 2 of 12)	30238.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-185196512-4	chr1	185196436	185196636	+	922.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7632.0	NM_001163754	98732.0	Mm.275841	NM_172649	ENSMUSG00000039318	Rab3gap2	1110059F07Rik|2010002H18Rik|5830469C09|AI851069|AW743433|RAB3-GAP150|mKIAA0839	RAB3 GTPase activating protein subunit 2	protein-coding	3.45978845343906	3.38916283961489	4.91090620129827	4.03015902763195	4.49178196303402	5.64748877969066	4.46902470046584	4.11377274806918	0.906503736677439	0.0691339643536913	0.395034808129611
Merged-chr2-71661620-2	chr2	71661542	71661742	+	621.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_039557, intron 2 of 3).2	RMER1C|Other|Other	-57775.0	NR_037979	381371.0	Mm.330284	NM_201366	ENSMUSG00000064263	Platr26	Gm1631	pluripotency associated transcript 26	ncRNA	0.906024734570012	0.780826229730635	1.26893122346203	0.759737930105018	1.37940865414165	1.32875837891161	1.51468529642899	1.35499825832126	2.11435506370536	0.13048115182682	0.56544727863238
Merged-chr2-58665545-2	chr2	58665445	58665645	+	785.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289660, intron 1 of 7)	intron (NM_001289660, intron 1 of 7)	-89639.0	NM_001289659	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-156437520-4	chr1	156437429	156437629	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009230, intron 11 of 15)	intron (NM_009230, intron 11 of 15)	-16614.0	NM_001346967	77352.0	Mm.428709	NM_001033180	ENSMUSG00000026601	Axdnd1	9430070O13Rik|Gm979	axonemal dynein light chain domain containing 1	protein-coding	5.2177771655196	5.48826257763309	5.61645160011577	5.50929820512168	5.47305487911943	5.78697266540102	5.93419262608167	5.42730348518287	0.232183805624349	0.386426135206807	0.876334568009738
Merged-chr2-28755658-3	chr2	28755550	28755750	+	895.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033874, intron 10 of 12)	intron (NM_001033874, intron 10 of 12)	22372.0	NR_037271	100526498.0		NR_037271	ENSMUSG00000092832	Mir3088	mir-3088|mmu-mir-3088	microRNA 3088	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44561207-4	chr7	44561098	44561298	+	878.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7233.0	NM_001285517	22260.0	Mm.968	NM_009473	ENSMUSG00000060601	Nr1h2	AI194859|LXR|LXRB|LXRBSV|LXRbeta|NER1|OR-1|RIP15|UR|Unr|Unr2	nuclear receptor subfamily 1, group H, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117948089-2	chr11	117947989	117948189	+	595.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	21277.0	NM_007707	12702.0	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-35305449-4	chr9	35305351	35305551	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GSAT_MM|Satellite|Satellite	24346.0	NR_040715	71133.0	Mm.158577	NR_040715	ENSMUSG00000111746	4933422A05Rik	-	RIKEN cDNA 4933422A05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-66232822-1	chr7	66232722	66232922	+	618.0	f0_balb.idr	Intergenic	Intergenic	123307.0	NM_001081163	269941.0	Mm.333916	NM_001081163	ENSMUSG00000032640	Chsy1	mKIAA0990	chondroitin sulfate synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36558230-4	chr18	36558245	36558445	+	857.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2258.0	NM_175375	108857.0	Mm.482287	NM_175375	ENSMUSG00000024483	Ankhd1	1110004O12Rik|4933432B13Rik|9130019P20Rik|A530027J04Rik|A630021B20Rik|AA571404|Mask|mFLJ00246|mKIAA1085	ankyrin repeat and KH domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-34065453-3	chr8	34065351	34065551	+	948.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	42363.0	NM_001293758	22428.0	Mm.150373	NM_011722	ENSMUSG00000031516	Dctn6	AU044699|WS-3|p27	dynactin 6	protein-coding	2.76116986855122	3.29066613671915	3.34389358948011	2.42628751182851	3.04150706931114	2.2361053284153	3.44258007380957	3.26912726781596	0.123664661447991	0.854893991144174	0.998431161219273
Merged-chr12-8341326-1	chr12	8341226	8341426	+	871.0	f1_c57bl6.idr	intron (NM_021429, intron 6 of 6)	intron (NM_021429, intron 6 of 6)	27893.0	NM_021429	58240.0	Mm.309954	NM_021429	ENSMUSG00000020605	Hs1bp3	-	HCLS1 binding protein 3	protein-coding	0.202310061947168	-0.0576482578516405	0.627089383293621	-0.0676708746992901	-0.0738654369292065	0.585827430836304	-0.0620518179356806	-0.0669065114105187	-0.525521526983333	0.81689087093524	1
Merged-chr15-53474332-4	chr15	53474223	53474423	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177225, intron 4 of 4)	intron (NM_177225, intron 4 of 4)	-128140.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72390202-4	chr6	72390076	72390276	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016794, intron 1 of 2)	intron (NM_016794, intron 1 of 2)	491.0	NM_016794	22320.0	Mm.1838	NM_016794	ENSMUSG00000050732	Vamp8	AU041171|Edb|endobrevin	vesicle-associated membrane protein 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-22010395-4	chr16	22010293	22010493	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357424, intron 1 of 15)	intron (NM_001357424, intron 1 of 15)	909.0	NM_001357424	75826.0	Mm.297431	NM_029457	ENSMUSG00000022855	Senp2	2310007L05Rik|4930538C18Rik|AI646780|AW554757|Smt3ip2|SuPr-1|mKIAA1331	SUMO/sentrin specific peptidase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28368658-2	chr17	28368558	28368758	+	840.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3442.0	NM_021478	22157.0	Mm.42102	NM_021478	ENSMUSG00000037446	Tulp1	Tulp1l	tubby like protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-26743948-1	chr2	26743848	26744048	+	594.0	f1_balb.idr	Intergenic	L1_Mus1|LINE|L1	12228.0	NM_001359164	105244099.0		NM_001359164		Gm39773	LCN16	predicted gene, 39773	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-121638887-1	chr9	121638787	121638987	+	669.0	f1_c57bl6.idr	intron (NM_026915, intron 1 of 5)	ID_B1|SINE|B4	2706.0	NM_026915	69032.0	Mm.33351	NM_026915	ENSMUSG00000032530	Lyzl4	1810009N24Rik|AI504271|Lyc4|Lyza	lysozyme-like 4	protein-coding	0.70055547984689	0.756283661719892	1.90057863066568	1.2868130076035	1.73674051565451	0.760196594550022	1.91901731301593	0.727075179586351	0.443356061897437	0.770804511591127	0.998431161219273
Merged-chr5-113173546-1	chr5	113173446	113173646	+	614.0	f1_balb.idr	Intergenic	Intergenic	-10233.0	NM_172884	243219.0	Mm.160131	NM_172884	ENSMUSG00000051339	2900026A02Rik	8430408O14Rik|A530094D01|AW539426|Gm449|Kiaa1671|mKIAA1671	RIKEN cDNA 2900026A02 gene	protein-coding	0.0108475552909996	0.0285506543631016	0.0227630381455045	0.0182898770148799	0.675705687999174	0.397085517846854	0.024040497669861	0.666499677957663	4.07639452751092	0.059310877934688	1
Merged-chr11-117119338-8	chr11	117119195	117119395	+	983.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166507, intron 2 of 16)	RSINE1|SINE|B4	4123.0	NM_001166506	74136.0	Mm.272312	NM_028777	ENSMUSG00000020823	Sec14l1	1200017E04Rik|2810012L19Rik|Naa-35	SEC14-like lipid binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-66242915-4	chr14	66242834	66243034	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	-29110.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-73491018-2	chr3	73490918	73491118	+	612.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_040557, intron 2 of 4)	MTA_Mm-int|LTR|ERVL-MaLR	-9367.0	NR_040547	74693.0	Mm.292227	NR_040547	ENSMUSG00000102362	4930509J09Rik	-	RIKEN cDNA 4930509J09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-26644077-4	chr2	26643979	26644179	+	866.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3835.0	NR_024068	72091.0	Mm.27103	NR_024068		Snhg7	2610002F03Rik|AI427062	small nucleolar RNA host gene 7	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-66135267-2	chr7	66135167	66135367	+	705.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081163, intron 2 of 2)	intron (NM_001081163, intron 2 of 2)	25752.0	NM_001081163	269941.0	Mm.333916	NM_001081163	ENSMUSG00000032640	Chsy1	mKIAA0990	chondroitin sulfate synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30642787-2	chr2	30642687	30642887	+	811.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35224.0	NR_136917	665635.0	Mm.450149	NR_136917		Gm14486	-	predicted gene 14486	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-26353882-2	chr4	26353809	26354009	+	759.625	f0_balb.idr|f0_c57.idr	Intergenic	BGLII_B|LTR|ERVK	-7257.0	NM_172865	242362.0	Mm.245602	NM_172865	ENSMUSG00000040520	Manea	4932703L02Rik	mannosidase, endo-alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-157416001-1	chr1	157415901	157416101	+	565.5	f0_balb.idr	intron (NR_027984, intron 2 of 2)	intron (NR_027984, intron 2 of 2)	-3406.0	NM_177644	226525.0	Mm.235028	NM_177644	ENSMUSG00000070565	Rasal2	6530401P13|A330066M24Rik	RAS protein activator like 2	protein-coding	-0.498496240730554	-0.507036497022426	-0.848606206836128	-0.850672144835075	-0.715238044981471	-0.84137779156959	-0.84801407170274	-0.850311839014709	-1.95489365812336	0.492987846122255	1
Merged-chr18-38339565-3	chr18	38339485	38339685	+	821.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011937)	promoter-TSS (NM_011937)	-592.0	NM_011937	26384.0	Mm.22374	NM_011937	ENSMUSG00000052102	Gnpda1	GNPDA|Gnp1|Gnpi|oscillin	glucosamine-6-phosphate deaminase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-109555117-2	chr5	109555017	109555217	+	725.924988	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310694, intron 7 of 7)	G-rich|Low_complexity|Low_complexity	3876.0	NM_016715	57914.0	Mm.35771	NM_016715	ENSMUSG00000033467	Crlf2	CRLM2|Ly114|Tpte2|Tslpr	cytokine receptor-like factor 2	protein-coding	-0.183534901873243	-0.169303045645675	0.000716491238827253	0.529384999490042	-0.182647944932831	0.187753594430706	-0.172942012406434	-0.012627008538861	-1.02783560521365	0.647181486108289	1
Merged-chr17-26489604-1	chr17	26489504	26489704	+	581.0	f0_balb.idr	Intergenic	Intergenic	18868.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-51223905-2	chr3	51223805	51224005	+	952.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009834)	promoter-TSS (NM_009834)	-542.0	NM_009834	12457.0	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117334589-2	chr8	117334489	117334689	+	614.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	-14581.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-105341000-4	chr13	105340883	105341083	+	785.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46498.0	NM_001360891	71816.0	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-144697337-4	chr3	144697245	144697445	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001282037, intron 8 of 10)	(T)n|Simple_repeat|Simple_repeat	22990.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-84642268-1	chr2	84642168	84642368	+	652.0	f0_balb.idr	intron (NM_007615, intron 1 of 19)	PB1D10|SINE|Alu	7212.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	0.762770675523403	1.59522784594281	1.10983558482329	2.7931278819236	1.39475143187775	0.86219221880724	0.833561355175953	2.58126631686874	-0.428592993336228	0.748008792040139	0.998431161219273
Merged-chr2-80004746-2	chr2	80004646	80004846	+	801.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355141, intron 2 of 15)	intron (NM_001355141, intron 2 of 15)	34156.0	NM_001355142	18573.0	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-145283232-4	chr7	145283132	145283332	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132643, intron 1 of 22)	intron (NR_132643, intron 1 of 22)	779.0	NR_132644	233979.0	Mm.102235	NM_146206	ENSMUSG00000048677	Tpcn2	D830047E22Rik|Gm35086	two pore segment channel 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-100518310-4	chr5	100518220	100518420	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_012001)	promoter-TSS (NM_012001)	11.0	NM_001359204	26891.0	Mm.957	NM_012001	ENSMUSG00000035297	Cops4	AW208976|D5Ertd774e|SGN4	COP9 signalosome subunit 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-26912355-2	chr2	26912255	26912455	+	841.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013721, intron 4 of 7)	intron (NM_013721, intron 4 of 7)	1548.0	NM_013721	27176.0	Mm.328601	NM_013721	ENSMUSG00000062647	Rpl7a	Surf3	ribosomal protein L7A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-6467139-3	chr1	6467025	6467225	+	687.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20106.0	NM_001244693	240690.0	Mm.234612	NM_173868	ENSMUSG00000033740	St18	AV348974|Myt3|NZF-3|Nzf3|mKIAA0535	suppression of tumorigenicity 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84687856-4	chr8	84687756	84687956	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025788)	promoter-TSS (NM_025788)	6.0	NM_025788	66830.0	Mm.289698	NM_025788	ENSMUSG00000001910	Nacc1	2010001H03Rik|4930511N13Rik|Btbd14b|Nac1	nucleus accumbens associated 1, BEN and BTB (POZ) domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-118636972-4	chr5	118636893	118637093	+	947.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347445, intron 2 of 30)	intron (NM_001347445, intron 2 of 30)	76274.0	NM_172424	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	-1.70064632323792	-1.81294470997006	-1.82198078978096	-1.82940329477929	-1.8407275618158	-1.81098655378014	-1.67775643191689	-1.82807466993338	0.0376840119903865	0.991491645451152	1
Merged-chr11-97544867-2	chr11	97544767	97544967	+	565.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_018873, intron 3 of 19)	intron (NM_018873, intron 3 of 19)	30259.0	NM_018873	56013.0	Mm.342665	NM_018873	ENSMUSG00000038453	Srcin1	P140|SNIP|mKIAA1684|p140Cap	SRC kinase signaling inhibitor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-75659803-4	chr2	75659670	75659870	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146130, intron 1 of 10)	CpG	480.0	NR_033513	627828.0	Mm.459502	NR_033513	ENSMUSG00000092086	Gm6793	EG627828	heterogeneous nuclear ribonucleoprotein A3 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3689837-2	chr4	3689737	3689937	+	983.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 1 of 12)	MTD|LTR|ERVL-MaLR	11716.0	NM_010747	17096.0	Mm.317331	NM_010747	ENSMUSG00000042228	Lyn	AA407514|Hck-2|p53Lyn|p56Lyn	LYN proto-oncogene, Src family tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-105781859-3	chr1	105781724	105781924	+	892.7333369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009399, intron 1 of 9)	intron (NM_009399, intron 1 of 9)	1101.0	NM_009399	21934.0	Mm.6251	NM_009399	ENSMUSG00000026321	Tnfrsf11a	Ly109|ODFR|OFE|Rank|TRANCE-R|mRANK	tumor necrosis factor receptor superfamily, member 11a, NFKB activator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-65069468-2	chr14	65069368	65069568	+	734.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360385, intron 2 of 5)	intron (NM_001360385, intron 2 of 5)	28638.0	NM_018788	54616.0	Mm.103748	NM_018788	ENSMUSG00000021978	Extl3	2900009G18Rik|AU040105|Ext1l|mKIAA0519	exostoses (multiple)-like 3	protein-coding	1.20378392988221	2.52341931824535	0.671019043158185	0.652771503057796	1.35842807840712	0.698749452674801	1.98332566058675	0.656006526214253	-0.6723782934867	0.780508154086338	0.998431161219273
Merged-chr10-85872473-2	chr10	85872373	85872573	+	555.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133993, intron 1 of 14)	intron (NM_133993, intron 1 of 14)	642.0	NM_133993	103136.0	Mm.18834	NM_133993	ENSMUSG00000001785	Pwp1	2310058A11Rik|2610205J09Rik|AI098170|AL022879|AV083409|AW550690	PWP1 homolog, endonuclein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-101921031-2	chr5	101920931	101921131	+	717.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 21 of 66)	intron (NM_172882, intron 21 of 66)	148890.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-172470194-3	chr1	172470088	172470288	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR78|LTR|ERV1	-5172.0	NM_029612	98365.0	Mm.150050	NM_029612	ENSMUSG00000026548	Slamf9	2310026I04Rik|AI462096|CD2F-10|CD84-H1|Cd2f10|SF2001	SLAM family member 9	protein-coding	5.20810860631992	5.01995848647619	5.19222473895544	5.15024436358163	3.15304341596935	2.70447118162225	3.22345327403013	3.10724954174144	-2.75856577047221	1.42452608125707e-10	2.98106928888181e-08
Merged-chr4-139194489-2	chr4	139194389	139194589	+	559.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	378.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	-1.39239040096365	-1.50706362993767	-1.51637061241093	-1.52401564492204	-1.25712099376264	-1.5050467680107	-1.51426371558223	-1.52264718775774	0.640753741356348	0.855918148133186	1
Merged-chr2-43761984-4	chr2	43761868	43762068	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301831, intron 1 of 14)	intron (NM_001301831, intron 1 of 14)	13144.0	NM_001301831	76117.0	Mm.217350	NM_153820	ENSMUSG00000049744	Arhgap15	5830480G12Rik	Rho GTPase activating protein 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78595625-2	chr15	78595489	78595689	+	840.4166869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1458.0	NM_028195	72318.0	Mm.32911	NM_028195	ENSMUSG00000018008	Cyth4	2510004M07Rik|5830469K17Rik|AI467541|Pscd4|mFLJ00017	cytohesin 4	protein-coding	2.40768305565507	2.42805340664711	2.99110297228797	2.64059615151441	2.04899553167844	2.82747846943573	2.92847861474173	2.65385040008694	0.029431243063433	0.968471719141845	0.998431161219273
Merged-chr18-7693110-4	chr18	7693035	7693235	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-66272.0	NM_001161620	75739.0	Mm.133293	NM_001081287	ENSMUSG00000057440	Mpp7	1110068J02Rik|2810038M04Rik|5430426E14Rik|AI415104|Gm955	membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-68361266-4	chr15	68361171	68361371	+	965.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19982.0	NR_029718	387228.0		NR_029718	ENSMUSG00000065437	Mir30d	Mirn30d|mir-30d|mmu-mir-30d	microRNA 30d	ncRNA	3.02018923306208	3.45578703018362	3.09538103721468	3.17850108514961	2.46250270918772	3.3154489595273	2.52679199813554	2.82705841260515	-0.663980583186801	0.302655360859329	0.804919244773953
Merged-chr5-117363600-1	chr5	117363500	117363700	+	825.0	f1_balb.idr	exon (NM_021539, exon 2 of 9)	exon (NM_021539, exon 2 of 9)	6295.0	NM_021539	59043.0	Mm.28489	NM_021539	ENSMUSG00000029364	Wsb2	AA673511|Swip2|WSB-2	WD repeat and SOCS box-containing 2	protein-coding	2.91440035447955	2.01211998232714	3.06762282985601	2.97793333746695	2.9398361638572	4.19608535531875	3.37781373461348	3.74896687789268	1.35097062255744	0.0341969541529506	0.260891303048178
Merged-chr17-28217250-2	chr17	28217150	28217350	+	969.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_027185, intron 2 of 10)	intron (NM_027185, intron 2 of 10)	9472.0	NM_027185	23853.0	Mm.204731	NM_027185	ENSMUSG00000002257	Def6	2410003F05Rik|6430538D02Rik|AV094905|Ibp|Slat|Slat2|Slat6	differentially expressed in FDCP 6	protein-coding	-1.7024385483431	-1.81249224917775	-1.82134771053534	-1.82862185015837	-1.70038292649591	-1.81057323376012	-1.81934302819017	-1.82731978264371	0.0376840119903864	0.991491645451152	1
Merged-chr4-9670096-1	chr4	9669996	9670196	+	818.0	f1_c57bl6.idr	promoter-TSS (NM_023066)	promoter-TSS (NM_023066)	-752.0	NM_001290367	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	1.02503643257194	1.9163395235653	0.935632609230569	1.68458000591917	0.676564021824817	0.726796910857647	0.710901640126087	1.60015462334118	-1.666368735752	0.255682535536536	0.754166751138371
Merged-chr5-140733491-4	chr5	140733399	140733599	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173405, intron 2 of 7)	MTE2a|LTR|ERVL-MaLR	9372.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-65102591-3	chr14	65102493	65102693	+	870.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4487.0	NM_001360385	54616.0	Mm.103748	NM_018788	ENSMUSG00000021978	Extl3	2900009G18Rik|AU040105|Ext1l|mKIAA0519	exostoses (multiple)-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-44481618-3	chr10	44481509	44481709	+	685.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22861.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-104544735-4	chr11	104544647	104544847	+	868.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145436, intron 1 of 18)	intron (NM_145436, intron 1 of 18)	5873.0	NM_001285990	217232.0	Mm.89845	NM_145436	ENSMUSG00000020687	Cdc27	AI452358|APC3|BC023187	cell division cycle 27	protein-coding	2.66483562379169	1.93801608150361	2.63802360247226	2.47342080212629	2.5398087635395	1.95069307314301	2.06339438994431	2.27184739192848	-0.537121667292129	0.51760859763144	0.947641799425091
Merged-chr8-124922703-4	chr8	124922590	124922790	+	957.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053207, intron 1 of 4)	URR1A|DNA|hAT-Charlie	24804.0	NM_001111141	244666.0	Mm.482915	NM_001111141	ENSMUSG00000031986	Sprtn	Gm505	SprT-like N-terminal domain	protein-coding	2.12176060522249	3.02466593117254	2.65653900374975	2.05705755782811	3.74507567498713	4.11401295714237	3.15793702056306	3.59723812642552	1.9925416849497	0.00204699496928016	0.0339850262565821
Merged-chr6-135241943-1	chr6	135241843	135242043	+	704.0	f1_balb.idr	intron (NM_001080552, intron 3 of 5)	intron (NM_001080552, intron 3 of 5)	5941.0	NM_001080552	14840.0	Mm.272306	NM_010352	ENSMUSG00000030206	Gsg1	-	germ cell associated 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-93996831-4	chr11	93996696	93996896	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027569, intron 1 of 28)	intron (NM_027569, intron 1 of 28)	705.0	NM_027569	70834.0	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-40842267-2	chr2	40842167	40842367	+	589.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_053011, intron 60 of 90)	Lx4B|LINE|L1	1605301.0	NR_105754	102465171.0		NR_105754	ENSMUSG00000098660	Mir6336	Gm27584|mmu-mir-6336	microRNA 6336	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-5805761-2	chr2	5805661	5805861	+	676.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133837, intron 8 of 12)	intron (NM_133837, intron 8 of 12)	-39273.0	NM_016918	53893.0	Mm.251904	NM_016918	ENSMUSG00000025817	Nudt5	-	nudix (nucleoside diphosphate linked moiety X)-type motif 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-53925018-2	chr10	53924918	53925118	+	613.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008548, intron 9 of 12)	intron (NM_008548, intron 9 of 12)	150778.0	NM_008548	17155.0	Mm.117294	NM_008548	ENSMUSG00000003746	Man1a	Man1a1|PCR1	mannosidase 1, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91839623-4	chr16	91839521	91839721	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010587, exon 18 of 39)	exon (NM_010587, exon 18 of 39)	92009.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-77209462-2	chr8	77209362	77209562	+	857.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083906, intron 6 of 8)	intron (NM_001083906, intron 6 of 8)	306954.0	NM_001083906	110784.0	Mm.324393	NM_001083906	ENSMUSG00000031618	Nr3c2	MR|Mlr	nuclear receptor subfamily 3, group C, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-73540331-3	chr5	73540263	73540463	+	785.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153313, intron 7 of 9)	intron (NR_153313, intron 7 of 9)	49337.0	NM_178896	100737.0	Mm.220312	NM_178896	ENSMUSG00000051674	Dcun1d4	AI836376	DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	protein-coding	0.606234254127672	0.873325625799822	1.49397329006726	0.450891041685956	0.439233026684363	1.17385731158157	0.461335296270901	0.808075544599401	-0.787664494229894	0.635194012015282	0.982417279970648
Merged-chr1-34434951-4	chr1	34434842	34435042	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1743.0	NR_039562	100628580.0		NR_039562	ENSMUSG00000092852	Mir5103	mir-5103|mmu-mir-5103|mu-mir-5103	microRNA 5103	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-44132606-2	chr16	44132506	44132706	+	660.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007508, intron 1 of 14)	intron (NM_007508, intron 1 of 14)	6653.0	NM_001358203	11964.0	Mm.217787	NM_007508	ENSMUSG00000052459	Atp6v1a	AI647066|Atp6a1|Atp6a2|Atp6v1a1|VA68|VPP2	ATPase, H+ transporting, lysosomal V1 subunit A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-62548851-4	chr18	62548734	62548934	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177829)	promoter-TSS (NM_177829)	29.0	NM_134136	107035.0	Mm.21295	NM_134136	ENSMUSG00000042211	Fbxo38	6030410I24Rik|AU044865|AW214031|Moka|SP329	F-box protein 38	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-120947325-3	chr7	120947249	120947449	+	740.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_025298)	TTS (NM_025298)	29605.0	NM_001164096	26939.0	Mm.193632	NM_025298	ENSMUSG00000030880	Polr3e	RPC5|Sin	polymerase (RNA) III (DNA directed) polypeptide E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-106440046-3	chr6	106439939	106440139	+	901.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109749, intron 8 of 25)	intron (NM_001109749, intron 8 of 25)	308998.0	NM_008370	16192.0	Mm.3448	NM_008370	ENSMUSG00000005364	Il5ra	CD125|CDw125|Il5r	interleukin 5 receptor, alpha	protein-coding	0.876333651048347	0.277436279784624	0.268947404738617	0.262337197526651	1.26747833947182	0.279338000806834	0.270827179521207	0.862047667703718	1.55707582900397	0.435732459232171	1
Merged-chr8-78626839-4	chr8	78626746	78626946	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001009981, intron 5 of 10)	intron (NM_001009981, intron 5 of 10)	117518.0	NM_001282108	76775.0	Mm.334631	NM_029736	ENSMUSG00000031684	Slc10a7	2410193C02Rik|P7	solute carrier family 10 (sodium/bile acid cotransporter family), member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125348285-2	chr6	125348205	125348405	+	744.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1418.0	NM_011609	21937.0	Mm.1258	NM_011609	ENSMUSG00000030341	Tnfrsf1a	CD120a|FPF|TNF-R|TNF-R-I|TNF-R1|TNF-R55|TNF-alphaR1|TNFAR|TNFR60|TNFRI|TNFRp55|TNFalpha-R1|Tnfr-2|Tnfr1|p55|p55-R	tumor necrosis factor receptor superfamily, member 1a	protein-coding	-0.0279359326486428	-0.269178853815667	0.271590451873298	-0.276336191829974	0.178950129553574	-0.268264729206873	-0.272333807665342	-0.275793302962814	-0.780660907380516	0.751727769815108	1
Merged-chr14-70351445-4	chr14	70351364	70351564	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001135151)	promoter-TSS (NM_001135151)	-40.0	NM_001135151	213053.0	Mm.270647	NM_144808	ENSMUSG00000022094	Slc39a14	FAD-123|ZIP-14|Zip14|fad123	solute carrier family 39 (zinc transporter), member 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-119322841-4	chr9	119322772	119322972	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045693)	promoter-TSS (NR_045693)	-445.0	NM_133985	108737.0	Mm.293565	NM_133985	ENSMUSG00000036737	Oxsr1	2210022N24Rik|2810422B09Rik|AI462649|AW209236|Osr1|mKIAA1101	oxidative-stress responsive 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46608162-2	chr19	46608062	46608262	+	726.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177812, intron 2 of 4)	intron (NM_001177812, intron 2 of 4)	9056.0	NM_146099	226178.0	Mm.329895	NM_146099	ENSMUSG00000047731	Wbp1l	D19Wsu162e|Opal1	WW domain binding protein 1 like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-179803813-4	chr1	179803733	179803933	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_026375, exon 1 of 36)	5' UTR (NM_026375, exon 1 of 36)	182.0	NM_026375	226747.0	Mm.128165	NM_026375	ENSMUSG00000026491	Ahctf1	6230412P20Rik|AV011447|Elys	AT hook containing transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-93182037-1	chr10	93181937	93182137	+	546.0	f0_balb.idr	intron (NM_146239, intron 1 of 16)	intron (NM_146239, intron 1 of 16)	19252.0	NR_035452	100316689.0		NR_035452	ENSMUSG00000089214	Mir1931	mir-1931|mmu-mir-1931	microRNA 1931	ncRNA	0.78519312636638	0.645344532131619	0.631621303410903	1.3825244309539	1.08197487272227	1.24815258861007	0.634673295077487	1.8908764127623	1.57482396109627	0.298569973010689	0.800257675359925
Merged-chr7-45134021-2	chr7	45133921	45134121	+	816.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_013520, exon 6 of 9)	exon (NM_013520, exon 6 of 9)	2411.0	NM_013520	14256.0	Mm.1658	NM_013520	ENSMUSG00000110206	Flt3l	Flt3lg|Ly72L	FMS-like tyrosine kinase 3 ligand	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-105515508-4	chr5	105515384	105515584	+	951.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3987.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	3.1835817279436	3.78931559348917	1.68051572850652	3.35553235538339	3.69897398282721	3.59530781366379	2.87749691445717	3.44798172103766	0.380402599638873	0.573816741259279	0.964527909969019
Merged-chr7-101933962-4	chr7	101933860	101934060	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027053)	promoter-TSS (NM_027053)	-103.0	NM_001162974	69358.0	Mm.214841	NM_027053	ENSMUSG00000064307	Lrrc51	1700008D07Rik|Lrtomt	leucine rich repeat containing 51	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-103558431-2	chr2	103558331	103558531	+	724.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7879.0	NM_178890	99382.0	Mm.35850	NM_178890	ENSMUSG00000032724	Abtb2	AW539457|BPOZ-2	ankyrin repeat and BTB (POZ) domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-4118698-4	chr11	4118613	4118813	+	863.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144520)	promoter-TSS (NM_144520)	16.0	NM_144520	67815.0	Mm.253922	NM_144520	ENSMUSG00000003585	Sec14l2	1300013M05Rik|Spf|TAP	SEC14-like lipid binding 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-139248257-4	chr7	139248141	139248341	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033206)	promoter-TSS (NM_001033206)	-241.0	NM_001033206	101631.0	Mm.334300	NM_001033206	ENSMUSG00000060260	Pwwp2b	AI594893|D7Ertd517e|D930023J19Rik|Pwwp2	PWWP domain containing 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-13073811-2	chr6	13073711	13073911	+	623.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_027992, intron 3 of 8)	L2|LINE|L2	4052.0	NM_027992	71900.0	Mm.27742	NM_027992	ENSMUSG00000029571	Tmem106b	2310036D22Rik|5830455K21Rik|6430519M21Rik|AI428776|AI661344	transmembrane protein 106B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-18289032-1	chr16	18288932	18289132	+	1000.0	f0_c57.idr	intron (NM_033324, intron 1 of 13)	CpG	136.0	NM_033324	94223.0	Mm.447352	NM_033324	ENSMUSG00000022718	Dgcr8	D16H22S1742E|D16H22S788E|D16Wis2|Gy1|N41|Vo59c07|mir-1306	DGCR8, microprocessor complex subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-21451100-2	chr17	21451000	21451200	+	710.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_009558, intron 1 of 4)	Lx5b|LINE|L1	726.0	NM_009558	22709.0	Mm.293030	NM_009558	ENSMUSG00000023892	Zfp51	Zfp-51|zfec12	zinc finger protein 51	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-22031878-5	chr16	22031817	22032017	+	748.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027488, intron 9 of 16)	ID_B1|SINE|B4	22433.0	NM_001357424	75826.0	Mm.297431	NM_029457	ENSMUSG00000022855	Senp2	2310007L05Rik|4930538C18Rik|AI646780|AW554757|Smt3ip2|SuPr-1|mKIAA1331	SUMO/sentrin specific peptidase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-10035685-2	chr17	10035585	10035785	+	587.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-259819.0	NR_045433	71092.0	Mm.243827	NR_045433		4930452A19Rik	4933424P20Rik	RIKEN cDNA 4930452A19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32095542-4	chr2	32095451	32095651	+	812.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145521)	promoter-TSS (NM_145521)	23.0	NM_001355238	227721.0	Mm.257236	NM_145521	ENSMUSG00000051373	Plpp7	D830019K17Rik|NET39|Ppapdc3	phospholipid phosphatase 7 (inactive)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-62523579-2	chr4	62523479	62523679	+	759.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_021498)	TTS (NM_021498)	1435.0	NM_021498	59001.0	Mm.27444	NM_021498	ENSMUSG00000028394	Pole3	1810034K18Rik|YBL1	polymerase (DNA directed), epsilon 3 (p17 subunit)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120361358-2	chr11	120361258	120361458	+	638.549988	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172802)	promoter-TSS (NM_172802)	-176.0	NM_172802	238021.0	Mm.481403	NM_172802	ENSMUSG00000025380	Fscn2	A930022G03|Ahl8|C630046B20Rik	fascin actin-bundling protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97780773-2	chr11	97780673	97780873	+	742.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_028078)	TTS (NR_028078)	993.0	NR_028078	100302498.0	Mm.453536	NR_028078	ENSMUSG00000064901	Snora21	MBI-3	small nucleolar RNA, H/ACA box 21	snoRNA	0.228848645127579	-0.170359437197217	0.0214259914684866	-0.181202403852026	-0.187951673481195	0.829413780201311	-0.175111869805342	-0.180372150485072	1.26626161947891	0.580524429230562	1
Merged-chr4-148607965-3	chr4	148607858	148608058	+	675.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr	exon (NM_001003893, exon 7 of 11)	exon (NM_001003893, exon 7 of 11)	5414.0	NM_001003893	17175.0	Mm.378962	NM_010767	ENSMUSG00000028979	Masp2	MASP-2|MAp19	mannan-binding lectin serine peptidase 2	protein-coding	1.52284737073864	0.813063142708312	1.03861937315997	1.36048279325629	0.753578316049054	2.48585366592854	1.2497446052993	1.36876716734714	1.35263184045008	0.300608139828735	0.801963340127147
Merged-chr18-84008640-2	chr18	84008540	84008740	+	572.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	77922.0	NM_001081300	110796.0	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115069460-2	chr11	115069360	115069560	+	903.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-7421.0	NM_172050	217306.0	Mm.222667	NM_172050	ENSMUSG00000048498	Cd300e	BC034097|CLM2|Cd300le|TREM5	CD300E molecule	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-115526668-2	chr8	115526568	115526768	+	655.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	180226.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-81459628-2	chr17	81459528	81459728	+	795.333374	f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 2 of 8)	intron (NR_104580, intron 2 of 8)	278759.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-27098219-3	chr9	27098116	27098316	+	991.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_023277, exon 9 of 9)	3' UTR (NM_023277, exon 9 of 9)	57205.0	NM_023277	83964.0	Mm.28770	NM_023277	ENSMUSG00000031990	Jam3	1110002N23Rik|JAM-3|JAM-C|Jcam3	junction adhesion molecule 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-120501505-2	chr9	120501405	120501605	+	623.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8899.0	NM_026892	68969.0	Mm.28753	NM_026892	ENSMUSG00000006941	Eif1b	1500010M16Rik|3110001N14Rik|Gc20	eukaryotic translation initiation factor 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100415134-2	chr11	100415034	100415234	+	657.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_176830)	promoter-TSS (NM_176830)	-315.0	NM_176830	66180.0	Mm.4940	NM_176830	ENSMUSG00000006931	P3h4	1110036O03Rik|AI413214|Leprel4|Sc65	prolyl 3-hydroxylase family member 4 (non-enzymatic)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-80564774-4	chr17	80564687	80564887	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033443)	promoter-TSS (NM_001033443)	-953.0	NM_001033443	381113.0	Mm.329216	NM_001033443	ENSMUSG00000033966	Cdkl4	AU067824|Gm942	cyclin-dependent kinase-like 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-23774281-4	chr17	23774181	23774381	+	967.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2679.0	NM_001357994	224613.0	Mm.328835	NM_153791	ENSMUSG00000040097	Flywch1	E030034P13Rik|mKIAA1552	FLYWCH-type zinc finger 1	protein-coding	5.61784477956591	4.60852429796997	5.10083837075275	5.64629434577188	3.91878268683761	4.33035559698632	4.18648407366216	4.24664122104617	-1.39567159257161	0.000172268681293327	0.00480669683292405
Merged-chr5-30998531-3	chr5	30998431	30998631	+	792.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	29854.0	NM_053085	69852.0	Mm.57874	NM_053085	ENSMUSG00000006642	Tcf23	2010002O16Rik|Out|bHLHa24	transcription factor 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-17660910-4	chr14	17660813	17661013	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113417)	promoter-TSS (NM_001113417)	-47.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-8925076-2	chr12	8924976	8925176	+	987.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008640, intron 1 of 6)	intron (NM_008640, intron 1 of 6)	3769.0	NM_008640	17775.0	Mm.30071	NM_008640	ENSMUSG00000020585	Laptm4a	AA286466|LAPTM4|MTP|Mtrp|mKIAA0108	lysosomal-associated protein transmembrane 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135381594-2	chr4	135381494	135381694	+	616.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145555, intron 1 of 4)	intron (NM_145555, intron 1 of 4)	4078.0	NM_001168498	230822.0	Mm.35548	NM_145555	ENSMUSG00000043924	Ncmap	A330049M08Rik|AA545175|Mp11	noncompact myelin associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-12462012-1	chr13	12461912	12462112	+	865.3333130000001	f0_balb.idr	promoter-TSS (NM_018886)	promoter-TSS (NM_018886)	-274.0	NM_001291057	56048.0	Mm.474138	NM_018886	ENSMUSG00000057554	Lgals8	1200015E08Rik|AI326142|D13Ertd524e|Lgals-8	lectin, galactose binding, soluble 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152904675-4	chr1	152904569	152904769	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2023.0	NM_001005507	226517.0	Mm.270775	NM_001005507	ENSMUSG00000042772	Smg7	9430023P16Rik|mKIAA0250	Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-154175551-4	chr1	154175456	154175656	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-25631.0	NM_001204908	100503355.0	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	Gm10178|Gm203	zinc finger protein 648	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-9017690-1	chr19	9017590	9017790	+	541.0	f1_balb.idr	exon (NM_009643, exon 5 of 5)	exon (NM_009643, exon 5 of 5)	28406.0	NM_001286518	66395.0	Mm.203866	NM_009643	ENSMUSG00000069833	Ahnak	DY6	AHNAK nucleoprotein (desmoyokin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-93242344-4	chr10	93242242	93242442	+	942.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_146239)	TTS (NM_146239)	68817.0	NM_001322268	13713.0	Mm.4454	NM_013508	ENSMUSG00000008398	Elk3	D430049E23Rik|Erp|Etrp|Net|Sap-2	ELK3, member of ETS oncogene family	protein-coding	3.76323943969933	3.50447952706309	3.73168941921563	4.50303180062011	3.47243396194423	3.72027751386123	3.68166327687176	3.85384310544618	-0.364553306682859	0.46004279641293	0.920750690285086
Merged-chr17-25240509-1	chr17	25240409	25240609	+	762.0	f1_balb.idr	promoter-TSS (NM_001346737)	promoter-TSS (NM_001346737)	339.0	NM_026676	68327.0	Mm.180687	NM_026676	ENSMUSG00000015126	Tsr3	0610007P22Rik|1110014B11Rik|AL022759	TSR3 20S rRNA accumulation	protein-coding	0.216353212931239	0.0658867848547069	0.0572310347629127	0.0504589455897254	0.815707102064357	1.22187520111849	0.0591517119362418	0.051648101725972	3.61279185358965	0.0821875456805124	1
Merged-chr11-40733989-4	chr11	40733861	40734061	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013552)	promoter-TSS (NM_013552)	300.0	NM_001290697	52653.0	Mm.276504	NM_026023	ENSMUSG00000020328	Nudcd2	-	NudC domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126759498-1	chr8	126759398	126759598	+	555.0	f1_balb.idr	Intergenic	Intergenic	-89522.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88718050-4	chr3	88717930	88718130	+	998.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028056, intron 3 of 5)	intron (NR_028056, intron 3 of 5)	1176.0	NR_028056	19769.0	Mm.4009	NM_009069	ENSMUSG00000028057	Rit1	RIBB|ROC1|Rit	Ras-like without CAAX 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5931756-4	chr19	5931653	5931853	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-6937.0	NM_026772	104252.0	Mm.491103	NM_026772	ENSMUSG00000045664	Cdc42ep2	1110008C05Rik|Borg1|Cep2|D19Bwg1013e	CDC42 effector protein (Rho GTPase binding) 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118934048-2	chr9	118933943	118934143	+	618.0	f0_balb.idr|f1_balb.idr	intron (NM_133710, intron 1 of 7)	ORR1D2|LTR|ERVL-MaLR	7507.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	1.54090257954908	1.77536919729214	1.95242233821866	2.08988850312043	3.85977976748326	3.39678678083858	3.01060754325756	3.96109780100492	3.40553818374579	1.27102038812455e-05	0.000563412658253142
Merged-chr1-34803337-2	chr1	34803237	34803437	+	648.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_183019, intron 1 of 9)	intron (NM_183019, intron 1 of 9)	1615.0	NM_183019	226970.0	Mm.41604	NM_183019	ENSMUSG00000037509	Arhgef4	9330140K16Rik|Asef	Rho guanine nucleotide exchange factor (GEF) 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-51824093-4	chr10	51824007	51824207	+	948.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-66913.0	NR_045158	71090.0	Mm.72588	NM_027670	ENSMUSG00000062224	4933411G06Rik	-	Sumo1 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-48549756-4	chr13	48549644	48549844	+	918.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11472.0	NR_029725	387244.0		NR_029725	ENSMUSG00000065421	Mirlet7a-1	Let-7a|Mirnlet7a|Mirnlet7a-1|let-7a-1	microRNA let7a-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-5951417-4	chr2	5951319	5951519	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081132)	promoter-TSS (NM_001081132)	-50.0	NM_001081132	326622.0	Mm.31102	NM_001081132	ENSMUSG00000043241	Upf2	-	UPF2 regulator of nonsense transcripts homolog (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-122874062-3	chr6	122873901	122874101	+	850.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026267)	promoter-TSS (NM_026267)	-556.0	NM_026267	67602.0	Mm.288114	NM_026267	ENSMUSG00000030327	Necap1	1200016B17Rik|AI747569|mFLJ00061	NECAP endocytosis associated 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-75986699-2	chr16	75986599	75986799	+	623.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14085.0	NR_155447	102632240.0	Mm.417237	NR_155447	ENSMUSG00000087214	Gm15555	-	predicted gene 15555	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117982759-3	chr10	117982660	117982860	+	997.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57301.0	NR_045342	71067.0	Mm.410793	NR_045342	ENSMUSG00000112500	4933411E08Rik	-	RIKEN cDNA 4933411E08 gene	ncRNA	2.21240154234943	1.76821086973036	3.19764483733679	2.90751404186196	2.10432808104665	2.50225188654343	2.75487550939309	2.21037043852261	-0.485264100289024	0.555776294451984	0.960200320962952
Merged-chr1-144197911-4	chr1	144197828	144198028	+	910.44165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20556.0	NM_153171	246709.0	Mm.38271	NM_153171	ENSMUSG00000051079	Rgs13	-	regulator of G-protein signaling 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-29398370-5	chr17	29398371	29398571	+	946.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37557.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	-1.17367364971587	-1.14665061133654	-1.15856004380685	-1.16834280623128	-1.17310571790619	-1.14406978763884	-0.42938571406771	-1.16659169643457	2.89727187181404	0.396361616615464	1
Merged-chr2-167708404-2	chr2	167708304	167708504	+	625.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	17227.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-88209772-2	chr17	88209672	88209872	+	620.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	84260.0	NM_001190356	225058.0	Mm.312053	NM_001190356		Gm4832	EG225058	predicted gene 4832	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-92987953-3	chr6	92987845	92988045	+	974.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015530, intron 1 of 2)	intron (NR_015530, intron 1 of 2)	47363.0	NR_015530	330385.0	Mm.483472	NR_015530	ENSMUSG00000097462	9530026P05Rik	B430306B02	RIKEN cDNA 9530026P05 gene	ncRNA	1.19884332877068	1.58688739178783	1.8749403846724	1.00422997216353	2.07313976232075	2.56447863719333	2.97041813393122	1.00879021665717	2.23710299446022	0.0480577414265186	0.318210144390381
Merged-chr10-94035978-4	chr10	94035865	94036065	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001304572)	promoter-TSS (NM_001304572)	-36.0	NM_053072	13998.0	Mm.269596	NM_053072	ENSMUSG00000020021	Fgd6	AA123052|Etohd4|ZFYVE24	FYVE, RhoGEF and PH domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127479928-3	chr7	127479779	127479979	+	908.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5342.0	NM_010183	14123.0	Mm.323505	NM_010183	ENSMUSG00000042423	Fbrs	Fbs|Fbs1	fibrosin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-6783774-2	chr17	6783674	6783874	+	805.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009510)	promoter-TSS (NM_009510)	-994.0	NM_009510	22350.0	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89953627-3	chr3	89953544	89953744	+	758.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081182, intron 11 of 27)	intron (NM_001081182, intron 11 of 27)	9688.0	NM_001081182	54667.0	Mm.30455	NM_001081182	ENSMUSG00000060671	Atp8b2	Id	ATPase, class I, type 8B, member 2	protein-coding	2.96097435157353	2.29472049583844	3.34347348102843	1.97408715138528	2.20879584372711	3.08330134302291	2.66714818600912	3.05767069076136	0.0630792806854615	0.933970256433629	0.998431161219273
Merged-chr10-44598882-4	chr10	44598801	44599001	+	975.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-140153.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-31078637-2	chr17	31078537	31078737	+	822.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009593, intron 2 of 14)	RMER30|DNA|hAT-Charlie	20943.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-41345905-2	chr13	41345805	41346005	+	761.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111324, intron 2 of 7)	intron (NM_001111324, intron 2 of 7)	13096.0	NM_017464	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-71662200-4	chr2	71662092	71662292	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_039557, intron 2 of 3).2	Arthur1|DNA|hAT-Tip100	-57225.0	NR_037979	381371.0	Mm.330284	NM_201366	ENSMUSG00000064263	Platr26	Gm1631	pluripotency associated transcript 26	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-62285955-2	chr4	62285855	62286055	+	804.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025286)	promoter-TSS (NM_025286)	-474.0	NM_025286	20530.0	Mm.292539	NM_025286	ENSMUSG00000066152	Slc31a2	AI604396|CTR2	solute carrier family 31, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-74374408-2	chr1	74374308	74374508	+	811.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013612)	promoter-TSS (NM_013612)	-795.0	NM_013612	18173.0	Mm.2913	NM_013612	ENSMUSG00000026177	Slc11a1	Bcg|Ity|Ity1|Lsh|Nramp|Nramp1|ity	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-59880109-2	chr11	59880009	59880209	+	870.5833130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32036.0	NM_134029	103850.0	Mm.41761	NM_134029	ENSMUSG00000032615	Nt5m	2010013E09Rik|AI846937|dNT-2	5',3'-nucleotidase, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81642637-2	chr10	81642537	81642737	+	729.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_027480, exon 17 of 20)	exon (NM_027480, exon 17 of 20)	-6432.0	NM_001142963	100233208.0	Mm.327168	NM_001142963	ENSMUSG00000096856	Gm10778	-	predicted gene 10778	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-77610454-3	chr15	77610360	77610560	+	934.8444210000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB1|LINE|L1	-14335.0	NM_177820	328561.0	Mm.379486	NM_177820	ENSMUSG00000050014	Apol10b	9130218O11Rik	apolipoprotein L 10B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-49108929-2	chr11	49108829	49109029	+	752.700012	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	4828.0	NM_146337	258334.0	Mm.390388	NM_146337	ENSMUSG00000047511	Olfr1396	MOR276-2	olfactory receptor 1396	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-40330664-3	chr1	40330566	40330766	+	654.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356478, intron 4 of 10)	intron (NM_001356478, intron 4 of 10)	6077.0	NM_133193	107527.0	Mm.155583	NM_133193	ENSMUSG00000070942	Il1rl2	AI481289|AW551444|IL-1Rrp2	interleukin 1 receptor-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-149040300-2	chr6	149040200	149040400	+	959.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177192, intron 6 of 20)	intron (NM_177192, intron 6 of 20)	61380.0	NM_177192	320560.0	Mm.426874	NM_177192	ENSMUSG00000030313	Dennd5b	9330160C06Rik|AI852444|D030011O10Rik|Gm17524	DENN/MADD domain containing 5B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28750224-2	chr17	28750124	28750324	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19093.0	NM_011950	26415.0	Mm.27970	NM_011950	ENSMUSG00000004864	Mapk13	SAPK4|Serk4	mitogen-activated protein kinase 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-72319344-3	chr4	72319243	72319443	+	956.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	118099.0	NR_027923	68285.0	Mm.37541	NR_027923		C630043F03Rik	AI851307	RIKEN cDNA C630043F03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-155145293-2	chr1	155145193	155145393	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008209, intron 1 of 5)	intron (NM_008209, intron 1 of 5)	1521.0	NM_001355063	15064.0	Mm.7580	NM_008209	ENSMUSG00000026471	Mr1	H2ls	major histocompatibility complex, class I-related	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-80335276-4	chr1	80335151	80335351	+	850.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016716, intron 1 of 15)	intron (NM_016716, intron 1 of 15)	5439.0	NM_001313728	26554.0	Mm.12665	NM_016716	ENSMUSG00000004364	Cul3	KIAA0617	cullin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85522019-2	chr12	85521919	85522119	+	734.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48129.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111487380-2	chr12	111487280	111487480	+	682.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1557.0	NM_001033248	212539.0	Mm.81916	NM_001033248	ENSMUSG00000010529	Gm266	-	predicted gene 266	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-82821666-4	chr18	82821559	82821759	+	989.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID|SINE|ID	-34238.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-18028761-4	chr2	18028672	18028872	+	875.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_028378, exon 1 of 1)	non-coding (NR_028378, exon 1 of 1)	1523.0	NR_028378	100034739.0	Mm.401643	NR_028378		Gm17762	-	predicted gene, 17762	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-76071047-4	chr2	76070950	76071150	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081033, intron 12 of 19)	intron (NM_001081033, intron 12 of 19)	-89083.0	NM_030188	78802.0	Mm.282339	NM_030188	ENSMUSG00000075271	Ttc30a1	4930506L13Rik	tetratricopeptide repeat domain 30A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-57464882-3	chr12	57464791	57464991	+	994.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	81220.0	NM_008259	15375.0	Mm.4578	NM_008259	ENSMUSG00000035451	Foxa1	Hnf-3a|Hnf3a|Tcf-3a|Tcf3a	forkhead box A1	protein-coding	1.12764819037991	2.22028409582136	1.23032751496905	1.19351191785532	3.25312046044844	3.05692609489442	2.86429322661812	3.00471623437571	3.67368831013646	0.000258254024743469	0.00653698689635473
Merged-chr1-57394173-4	chr1	57394073	57394273	+	961.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037742, intron 3 of 7)	intron (NM_001037742, intron 3 of 7)	-12375.0	NM_001081181	68115.0	Mm.275428	NM_001081181	ENSMUSG00000025971	Maip1	9430016H08Rik|AA409999|C78988	matrix AAA peptidase interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-52922790-2	chr2	52922690	52922890	+	767.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	64922.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-182520203-3	chr1	182520130	182520330	+	934.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2620.0	NM_009794	12334.0	Mm.19306	NM_009794	ENSMUSG00000026509	Capn2	AI326419|CALP80|Capa-2|Capa2|m-calpain|m-calpin	calpain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-137072809-3	chr4	137072701	137072901	+	942.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24106.0	NM_198248	230848.0	Mm.31068	NM_198248	ENSMUSG00000060862	Zbtb40	BC059177|C230087D24|Gm571|mKIAA0478	zinc finger and BTB domain containing 40	protein-coding	-0.332021882280601	-0.319809365456366	-0.323823012156538	-0.326911265452884	-0.331262920478073	0.166594524471712	0.125472183655572	-0.0289941857836078	3.60189695240628	0.138296873009064	1
Merged-chr11-109414887-1	chr11	109414787	109414987	+	565.0	f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-11059.0	NM_025275	13929.0	Mm.211850	NM_025275	ENSMUSG00000020610	Amz2	AA408420|ESTM12|X83328	archaelysin family metallopeptidase 2	protein-coding	2.43284651953282	2.25531730377052	2.96067084973523	2.65139112272691	2.15222772370683	2.41160394050834	1.40260270830513	2.13052412362511	-1.20325195307407	0.163514781968988	0.626389001936116
Merged-chr5-92375549-4	chr5	92375434	92375634	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310664, intron 2 of 10)	intron (NM_001310664, intron 2 of 10)	-12238.0	NR_038116	56066.0	Mm.131723	NM_019494	ENSMUSG00000060183	Cxcl11	Cxc11|H174|I-tac|Ip9|Itac|Scyb11|Scyb9b|b-R1|betaR1	chemokine (C-X-C motif) ligand 11	protein-coding	5.73262276424786	5.31772191922145	5.01783320723305	4.33759256804982	5.38455687678867	5.31668795559921	4.55147743951812	4.83556554323835	-0.15315253507742	0.676258983418578	0.99440487726309
Merged-chr1-39614160-2	chr1	39614060	39614260	+	580.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36813.0	NM_001033135	67702.0	Mm.28614	NM_001033135	ENSMUSG00000048234	Rnf149	1600023E10Rik|AV037261|C76763|Gm15832|Greul4	ring finger protein 149	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-53795385-2	chr11	53795271	53795471	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NR_033332, intron 3 of 3)	intron (NR_033332, intron 3 of 3)	24898.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-102285540-2	chr11	102285440	102285640	+	981.25	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001302505, exon 1 of 3)	5' UTR (NM_001302505, exon 1 of 3)	601.0	NM_001302505	72053.0	Mm.101274	NM_028076	ENSMUSG00000034757	Tmub2	2010008E23Rik	transmembrane and ubiquitin-like domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-58844267-4	chr7	58844168	58844368	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	186066.0	NM_009728	11982.0	Mm.135129	NM_009728	ENSMUSG00000025324	Atp10a	Atp10c|pfatp	ATPase, class V, type 10A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191103993-2	chr1	191103893	191104093	+	717.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030060, intron 2 of 2)	intron (NM_030060, intron 2 of 2)	5579.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-51226201-1	chr19	51226101	51226301	+	548.0	f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	-547555.0	NM_001290356	58178.0	Mm.313672	NM_021377	ENSMUSG00000043531	Sorcs1	Sorcs|mSorCS	sortilin-related VPS10 domain containing receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-49271994-4	chr13	49271909	49272109	+	913.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015759, intron 14 of 17)	intron (NM_015759, intron 14 of 17)	-23303.0	NM_028340	66329.0	Mm.34308	NM_025491	ENSMUSG00000021384	Susd3	1700017I11Rik|2810440J20Rik	sushi domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91395888-3	chr2	91395784	91395984	+	774.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175123, intron 2 of 8)	RMER19C|LTR|ERVK	48830.0	NM_001311144	228356.0	Mm.386861	NM_175123	ENSMUSG00000040591	1110051M20Rik	AI586322	RIKEN cDNA 1110051M20 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-9375449-2	chr9	9375349	9375549	+	644.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-136436.0	NM_027823	71544.0	Mm.334955	NM_027823	ENSMUSG00000050730	Arhgap42	9030420J04Rik|BE136619	Rho GTPase activating protein 42	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-101998734-4	chr4	101998632	101998832	+	847.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11892.0	NM_001085520	381536.0	Mm.297685	NM_001085520	ENSMUSG00000078625	Gm12789	-	predicted gene 12789	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-21701990-3	chr18	21701892	21702092	+	942.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49624.0	NM_001081403	225266.0	Mm.436836	NM_001081403	ENSMUSG00000042514	Klhl14	6330403N15Rik|AI785250|printor	kelch-like 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-63721755-4	chr9	63721681	63721881	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016769, intron 1 of 8)	intron (NM_016769, intron 1 of 8)	36213.0	NM_016769	17127.0	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100907495-4	chr7	100907392	100907592	+	994.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081116, intron 1 of 20)	intron (NM_001081116, intron 1 of 20)	24669.0	NM_001081116	207212.0	Mm.29954	NM_001081116	ENSMUSG00000032875	Arhgef17	8030463K16|AI428794|AW558066|BC035332|mKIAA0337	Rho guanine nucleotide exchange factor (GEF) 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-128962515-4	chr4	128962413	128962613	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172875)	promoter-TSS (NM_172875)	-58.0	NM_001301841	242669.0	Mm.215814	NM_172875	ENSMUSG00000028789	Azin2	4933429I20Rik|Adc|Azi2|B930082O19|ODC-p|Odcp	antizyme inhibitor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-93917370-4	chr8	93917270	93917470	+	876.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113384, intron 3 of 7)	intron (NM_001113384, intron 3 of 7)	95270.0	NM_011787	23802.0	Mm.34641	NM_011787	ENSMUSG00000031751	Amfr	gp78	autocrine motility factor receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-124549325-2	chr14	124549225	124549425	+	567.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_207667, intron 1 of 4)	Lx3B|LINE|L1	127802.0	NM_207667	14169.0	Mm.206362	NM_010201	ENSMUSG00000025551	Fgf14	FHF-4|Fhf4|Tg(tetO-MAPT*P301L)4510Kha|mFHF-4(1B)	fibroblast growth factor 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-106037123-4	chr1	106037033	106037233	+	980.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TAAA)n|Simple_repeat|Simple_repeat	46727.0	NM_001122675	227449.0	Mm.210188	NM_001122675	ENSMUSG00000038866	Zcchc2	9930114B20Rik|AW212015	zinc finger, CCHC domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-94245590-4	chr16	94245490	94245690	+	859.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360045, intron 5 of 10)	intron (NM_001360045, intron 5 of 10)	44701.0	NM_001360045	110948.0	Mm.30921	NM_139145	ENSMUSG00000040820	Hlcs	410I21.SP6|D16Jhu34	holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-28402361-4	chr2	28402284	28402484	+	845.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45557.0	NM_001005420	241289.0	Mm.330095	NM_001005420	ENSMUSG00000035829	Ppp1r26	Gm347|Kiaa0649|mKIAA0649	protein phosphatase 1, regulatory subunit 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-111743008-2	chr8	111742788	111742988	+	753.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009954, intron 1 of 6)	intron (NM_009954, intron 1 of 6)	961.0	NM_009954	12927.0	Mm.3758	NM_009954	ENSMUSG00000031955	Bcar1	AI385681|Cas|Crkas	breast cancer anti-estrogen resistance 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84637378-1	chr8	84637278	84637478	+	724.0	f1_c57bl6.idr	intron (NM_001252060, intron 45 of 47)	B4A|SINE|B4	25474.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	1.78852204061326	1.73537998486574	1.01151593590092	2.9358599988964	1.18699069862772	1.04604639451771	2.2107868916995	1.77755816944987	-1.06870679972314	0.361927475997566	0.8580597646541
Merged-chr8-123038708-2	chr8	123038611	123038811	+	856.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 1 of 12)	intron (NM_001081379, intron 1 of 12)	3573.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	-0.192138951420912	-0.171026567405401	0.47609772207122	-0.183183962147142	-0.19079765004553	-0.169497709948121	0.883097886507608	-0.182249865450918	1.04796785553494	0.664078450047045	1
Merged-chr16-73234357-2	chr16	73234257	73234457	+	794.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	571208.0	NM_019413	19876.0	Mm.310772	NM_019413	ENSMUSG00000022883	Robo1	AW494633|AW742721|DUTT1|Gm310	roundabout guidance receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132974153-4	chr4	132974094	132974294	+	932.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010208)	promoter-TSS (NM_010208)	99.0	NM_010208	14191.0	Mm.271665	NM_010208	ENSMUSG00000028874	Fgr	-	FGR proto-oncogene, Src family tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107547256-4	chr9	107547118	107547318	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053253)	promoter-TSS (NM_053253)	-92.0	NM_053253	114602.0	Mm.28331	NM_053253	ENSMUSG00000010044	Zmynd10	Blu	zinc finger, MYND domain containing 10	protein-coding	4.28220256721883	3.36263216479795	4.37660826586586	4.04639011646532	4.39413167850046	3.97854070066393	4.5949072525625	3.72979952665878	0.189860195218386	0.677117872216351	0.994620498390277
Merged-chr12-98735544-3	chr12	98735441	98735641	+	961.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011877)	promoter-TSS (NM_011877)	-896.0	NM_011877	24000.0	Mm.4420	NM_011877	ENSMUSG00000021009	Ptpn21	PTPD1|PTPRL10	protein tyrosine phosphatase, non-receptor type 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-43678896-2	chr19	43678796	43678996	+	827.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB5|LINE|L1	3718.0	NR_045645	100502982.0	Mm.313570	NR_045645		BC037704	-	cDNA sequence BC037704	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-96416837-4	chr10	96416729	96416929	+	937.908325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15-int|LTR|ERVL	190622.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-153746417-2	chr1	153746317	153746517	+	646.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_011267)	TTS (NM_011267)	-3009.0	NM_011882	24014.0	Mm.259254	NM_011882	ENSMUSG00000066800	Rnasel	E230029I04Rik	ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-148153420-2	chr4	148153317	148153517	+	559.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001355702)	TTS (NM_001355702)	-1282.0	NM_001163707	50762.0	Mm.27445	NM_015797	ENSMUSG00000055401	Fbxo6	AA408845|FBG2|Fbs2|Fbx6b|Fbxo6b	F-box protein 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-75392004-2	chr4	75391904	75392104	+	734.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-113712.0	NM_025849	66928.0	Mm.24332	NM_025849	ENSMUSG00000028398	Dmac1	1700027K24Rik|3110001D03Rik|Tmem261	distal membrane arm assembly complex 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45129718-3	chr7	45129659	45129859	+	919.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1014.0	NM_009438	22121.0	Mm.180458	NM_009438	ENSMUSG00000074129	Rpl13a	1810026N22Rik|Tstap198-7|tum-antigen	ribosomal protein L13A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70438097-3	chr11	70438008	70438208	+	600.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_106064)	promoter-TSS (NR_106064)	-147.0	NR_106064	102465670.0		NR_106064	ENSMUSG00000099109	Mir7115	Gm27902|mmu-mir-7115	microRNA 7115	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91453436-3	chr2	91453316	91453516	+	824.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-4115.0	NM_172668	228357.0	Mm.275149	NM_172668	ENSMUSG00000027253	Lrp4	6430526J12Rik|D230026E03|Megf7|mdig	low density lipoprotein receptor-related protein 4	protein-coding	-0.289851946104314	-0.737899168765768	-0.740932179010924	-0.743264539078787	-0.280173431323445	-0.737213951634147	-0.740264187498491	-0.742857569821679	0.0418983010157508	0.98887086484455	1
Merged-chr9-21195260-2	chr9	21195160	21195360	+	764.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183408, intron 6 of 14)	intron (NM_183408, intron 6 of 14)	-1445.0	NM_019798	18577.0	Mm.191749	NM_019798	ENSMUSG00000032177	Pde4a	D9Ertd60e|Dpde2	phosphodiesterase 4A, cAMP specific	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-122922950-4	chr4	122922835	122923035	+	756.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36859.0	NM_001358036	12331.0	Mm.8687	NM_007598	ENSMUSG00000028656	Cap1	-	CAP, adenylate cyclase-associated protein 1 (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-6427584-4	chr4	6427481	6427681	+	956.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010945, intron 10 of 30)	intron (NM_010945, intron 10 of 30)	26690.0	NM_010945	18201.0	Mm.3059	NM_010945	ENSMUSG00000028245	Nsmaf	AA959567|C630007J05|Fan	neutral sphingomyelinase (N-SMase) activation associated factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-12018189-2	chr19	12018089	12018289	+	715.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	18551.0	NM_146680	258675.0	Mm.271517	NM_146680	ENSMUSG00000067529	Olfr1423	MOR239-3	olfactory receptor 1423	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-40126110-2	chr10	40126010	40126210	+	649.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 1 of 5)	B1_Mur3|SINE|Alu	16144.0	NM_028247	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-64919519-4	chr1	64919461	64919661	+	866.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039493, intron 3 of 7)	intron (NM_001039493, intron 3 of 7)	37263.0	NM_001039493	241075.0	Mm.239534	NM_175509	ENSMUSG00000051344	Plekhm3	9430067K14Rik|A230102O09Rik|AI449570|DAPR|Plekhm1l	pleckstrin homology domain containing, family M, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-100170493-4	chr12	100170392	100170592	+	895.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-10839.0	NM_183155	217827.0	Mm.224076	NM_183155	ENSMUSG00000021179	Nrde2	6720454P05Rik	nrde-2 necessary for RNA interference, domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171285531-3	chr1	171285454	171285654	+	868.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013919, exon 3 of 13)	exon (NM_013919, exon 3 of 13)	2407.0	NM_013919	30941.0	Mm.27510	NM_013919	ENSMUSG00000053483	Usp21	ESTM28|Usp16|Usp23|W53272	ubiquitin specific peptidase 21	protein-coding	2.04157963551521	2.32073044558061	0.960999324606897	2.24129857497418	1.12536511026105	1.24797517950034	0.965806991215618	1.52769196516109	-2.45751369044813	0.0466579496830707	0.312505813340611
Merged-chr12-76799586-2	chr12	76799486	76799686	+	614.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_134050, exon 7 of 7)	3' UTR (NM_134050, exon 7 of 7)	-4032.0	NM_030677	14776.0	Mm.441856	NM_030677	ENSMUSG00000042808	Gpx2	GI-GPx|GPx-GI|GSHPx-2|GSHPx-GI	glutathione peroxidase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-21948236-2	chr19	21948154	21948354	+	836.599976	f0_c57.idr|f1_c57bl6.idr	Intergenic	URR1A|DNA|hAT-Charlie	169914.0	NM_031997	83921.0	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	3.97847991939587	4.90190183040202	4.10557874072792	2.96654026000661	2.7037954459641	3.32132748571372	1.54711967130821	1.77923892760549	-2.48726938537486	0.000458421197602906	0.0104166846786767
Merged-chr11-106500842-4	chr11	106500716	106500916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_030703)	promoter-TSS (NR_030703)	-175.0	NR_030703	100216537.0		NR_030703	ENSMUSG00000065126	Snord104	-	small nucleolar RNA, C/D box 104	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-103429409-2	chr3	103429309	103429509	+	571.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-145836.0	NM_018800	54524.0	Mm.88818	NM_018800	ENSMUSG00000027849	Syt6	3110037A08Rik|AW048930|sytVI	synaptotagmin VI	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135352655-4	chr4	135352530	135352730	+	941.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016799, intron 1 of 17)	CpG	584.0	NM_016799	51796.0	Mm.1963	NM_016799	ENSMUSG00000028809	Srrm1	AA407769|POP101|Srm160	serine/arginine repetitive matrix 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125008414-2	chr6	125008314	125008514	+	848.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252083)	promoter-TSS (NM_001252083)	-824.0	NM_001252083	269800.0	Mm.108677	NM_175557	ENSMUSG00000038346	Zfp384	BB163993|C130073D16Rik|Ciz|NP|Nmp4	zinc finger protein 384	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26917924-1	chr17	26917824	26918024	+	1000.0	f1_balb.idr	intron (NM_053173, intron 1 of 10)	intron (NM_053173, intron 1 of 10)	833.0	NM_053173	16580.0	Mm.491138	NM_016761	ENSMUSG00000024301	Kifc5b	Hset|KNSL2|Kifc5a	kinesin family member C5B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-73881670-4	chr12	73881570	73881770	+	998.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19654.0	NM_001313920	15251.0	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-87181813-4	chr17	87181641	87181841	+	825.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER5C1|DNA|hAT-Charlie	13201.0	NR_046016	399626.0	Mm.396062	NR_046016		C330024C12Rik	-	RIKEN cDNA C330024C12 gene	ncRNA	1.15237050870043	1.69670994295164	1.7340162447728	0.853145050549094	1.59678142374741	0.882002586234871	1.25312176466602	1.35662841025459	-0.425028445328899	0.746992223843712	0.998431161219273
Merged-chr1-74268956-2	chr1	74268856	74269056	+	754.333374	f1_balb.idr|f1_c57bl6.idr	TTS (NM_029711)	TTS (NM_029711)	-9644.0	NM_174985	227289.0	Mm.246587	NM_174985	ENSMUSG00000064272	Gpbar1	BG37|GPCR|GPR131|M-BAR|TGR5	G protein-coupled bile acid receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-18056632-4	chr2	18056541	18056741	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149308, intron 1 of 9)	CpG	913.0	NR_149308	17354.0	Mm.209175	NM_010804	ENSMUSG00000026743	Mllt10	Af10|B130021D15Rik|D630001B22Rik|mKIAA4140	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-89028048-4	chr11	89027950	89028150	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1L|LTR|ERVL-MaLR	28647.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	5.85720058845811	4.91221183746811	4.89295826857789	5.03619492554229	5.55285673807947	5.46093664208157	5.79361316638694	5.16104056762014	0.296485225842479	0.35441702622801	0.853391720177295
Merged-chr1-39785953-2	chr1	39785853	39786053	+	744.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19379.0	NM_001177348	100042065.0	Mm.209678	NM_001177348	ENSMUSG00000091937	Gm3646	-	predicted gene 3646	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-30454088-2	chr6	30453988	30454188	+	979.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001311087, exon 9 of 9)	3' UTR (NM_001311087, exon 9 of 9)	-6897.0	NR_131049	69337.0	Mm.396168	NR_131049	ENSMUSG00000085470	1700012C14Rik	-	RIKEN cDNA 1700012C14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-144312333-4	chr1	144312243	144312443	+	938.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63239.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-50570853-2	chr17	50570753	50570953	+	614.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013880, intron 1 of 5)	URR1B|DNA|hAT-Charlie	61306.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95686831-2	chr3	95686731	95686931	+	641.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301705, intron 1 of 17)	intron (NM_001301705, intron 1 of 17)	1086.0	NM_144899	229595.0	Mm.490574	NM_144899	ENSMUSG00000015850	Adamtsl4	ADAMTSL-4|Tsrc1	ADAMTS-like 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-16780457-4	chr19	16780370	16780570	+	895.962524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173028, intron 1 of 71)	CpG	463.0	NM_173028	271564.0	Mm.211963	NM_173028	ENSMUSG00000046230	Vps13a	4930425F11|4930516E05Rik|4930543C13Rik|9930023P20|Chac|Chorein|D330038K10Rik|mKIAA0986	vacuolar protein sorting 13A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-36648680-2	chr15	36648580	36648780	+	691.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39707.0	NM_008774	18458.0	Mm.371570	NM_008774	ENSMUSG00000022283	Pabpc1	PABP|Pabp1|PabpI|Pabpl1|ePAB	poly(A) binding protein, cytoplasmic 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-54464168-4	chr14	54464077	54464277	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022993)	promoter-TSS (NM_022993)	30.0	NM_022993	65107.0	Mm.472719	NM_022993	ENSMUSG00000022175	Lrp10	Lrp9	low-density lipoprotein receptor-related protein 10	protein-coding	3.1801135321479	2.89021042757037	2.79223852358411	2.44559126695547	3.39333276893288	3.71354608054578	3.03880014462399	2.72685786156136	0.718476335625379	0.265159827436121	0.767868802425779
Merged-chr19-32179703-4	chr19	32179586	32179786	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 5 of 9)	intron (NM_144792, intron 5 of 9)	31327.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-10239971-2	chr3	10239871	10240071	+	623.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14254.0	NM_001357161	75497.0	Mm.47052	NM_029310	ENSMUSG00000027530	Fabp12	1700008G05Rik	fatty acid binding protein 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107630141-3	chr9	107630085	107630285	+	689.277771	f1_balb.idr|f1_c57bl6.idr	intron (NM_008138, intron 1 of 8)	intron (NM_008138, intron 1 of 8)	5157.0	NM_008138	14678.0	Mm.196464	NM_008138	ENSMUSG00000032562	Gnai2	C76432|Galphai2|Gia|Gnai-2	guanine nucleotide binding protein (G protein), alpha inhibiting 2	protein-coding	0.317562262756116	1.45372013461862	0.715295427009183	0.330333559250118	0.766533724817	0.349778121463796	0.87175154363612	0.331663340617622	-0.993277341156957	0.583340649700184	1
Merged-chr11-119935685-2	chr11	119935585	119935785	+	651.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7407.0	NM_001037754	108100.0	Mm.197534	NM_130862	ENSMUSG00000025372	Baiap2	IRSp53|R75030	brain-specific angiogenesis inhibitor 1-associated protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-93758291-4	chr6	93758198	93758398	+	984.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029850, intron 8 of 23)	Tigger7|DNA|TcMar-Tigger	154665.0	NR_104594	14924.0	Mm.217216	NM_010367	ENSMUSG00000045095	Magi1	AIP3|BAP1|Baiap1|Gukmi1|MAGI1c|Magi-1|TNRC19|WWP3|mKIAA4129	membrane associated guanylate kinase, WW and PDZ domain containing 1	protein-coding	6.06337794995778	5.52049465932313	6.40799096568763	5.93343287560352	6.68568803459657	6.4290228308586	6.86375908816699	6.27795980293253	0.60956186525132	0.0100630830336914	0.109627908811952
Merged-chr9-69398019-5	chr9	69397982	69398182	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145618)	promoter-TSS (NM_145618)	84.0	NM_145618	93697.0	Mm.35911	NM_145618	ENSMUSG00000032235	Ice2	B230343B06Rik|Narg2	interactor of little elongation complex ELL subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-23566389-4	chr18	23566314	23566514	+	892.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361215, intron 3 of 19)	intron (NM_001361215, intron 3 of 19)	68932.0	NM_001285810	13527.0	Mm.94371	NM_010087	ENSMUSG00000024302	Dtna	2210407P21Rik|DTN-A|Dtn|Gm19389|a-DB-1|adbn	dystrobrevin alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76196613-8	chr15	76196469	76196669	+	788.668762	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_201394)	promoter-TSS (NM_201394)	-859.0	NM_201394	18810.0	Mm.234912	NM_011117	ENSMUSG00000022565	Plec	AA591047|AU042537|EBS1|PCN|PLTN|Plec1	plectin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118157906-3	chr11	118157840	118158040	+	690.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28721.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-98609610-4	chr10	98609519	98609719	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-257752.0	NR_045179	667438.0	Mm.414522	NR_045179	ENSMUSG00000112896	Gm8633	EG667438	predicted gene 8633	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-5806655-4	chr10	5806553	5806753	+	861.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1188.0	NM_025995	67141.0	Mm.197520	NM_025995	ENSMUSG00000019773	Fbxo5	2510044I10Rik|C85305|Emi1|Fbxo31	F-box protein 5	protein-coding	1.88090267480405	2.79788863695354	1.12530105366551	2.39212020282007	1.4791598725453	2.27209138749838	1.60374039541592	1.35236881792334	-1.17394584041615	0.27040270084481	0.773417332874928
Merged-chr17-28486192-4	chr17	28486076	28486276	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010220)	promoter-TSS (NM_010220)	-27.0	NM_010220	14229.0	Mm.276405	NM_010220	ENSMUSG00000024222	Fkbp5	D17Ertd592e|Dit1|FKBP-5|FKBP51	FK506 binding protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-30917338-3	chr3	30917247	30917447	+	887.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001165954, intron 11 of 14)	intron (NM_001165954, intron 11 of 14)	52068.0	NM_001165954	241915.0	Mm.233173	NM_153421	ENSMUSG00000037652	Phc3	E030046K01Rik|Edr3|Hph3	polyhomeotic 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-113382984-4	chr13	113382885	113383085	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	119859.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-173538737-4	chr2	173538609	173538809	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16117.0	NM_028158	72221.0	Mm.46132	NM_028158	ENSMUSG00000027518	1700021F07Rik	-	RIKEN cDNA 1700021F07 gene	protein-coding	2.12117595573812	2.37030660154637	1.76198592833436	1.87289737278507	2.13790057340497	2.27190248881687	1.93500203380233	2.24130220990173	0.260069887748647	0.769929456145078	0.998431161219273
Merged-chr14-63119722-4	chr14	63119633	63119833	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB5|LINE|L1	-2729.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-122990089-4	chr6	122989970	122990170	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001005860)	promoter-TSS (NM_001005860)	-297.0	NM_001005860	474145.0	Mm.263483	NM_001005860	ENSMUSG00000059639	Clec4a4	Dcir2	C-type lectin domain family 4, member a4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-148579080-1	chr6	148578980	148579180	+	587.0	f0_balb.idr	Intergenic	Intergenic	35229.0	NR_045867	622319.0	Mm.491049	NM_001037912	ENSMUSG00000070995	Gm6313	EG622319	predicted gene 6313	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-3308507-4	chr8	3308405	3308605	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR44-int|LTR|ERVK	-28888.0	NM_001330056	16337.0	Mm.268003	NM_010568	ENSMUSG00000005534	Insr	4932439J01Rik|CD220|D630014A15Rik|IR|IR-A|IR-B	insulin receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-51877409-4	chr15	51877329	51877529	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030132)	promoter-TSS (NM_030132)	-12.0	NM_030132	78581.0	Mm.176347	NM_030132	ENSMUSG00000022313	Utp23	1700010I21Rik|AI662478|BB238373|D530033C11Rik	UTP23 small subunit processome component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-148486364-4	chr5	148486275	148486475	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	65298.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-84720204-4	chr18	84720102	84720302	+	894.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173770)	promoter-TSS (NM_173770)	58.0	NM_173770	240479.0	Mm.472378	NM_173770	ENSMUSG00000047992	Fam69c	B230399E16Rik	family with sequence similarity 69, member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-111782609-3	chr10	111782428	111782628	+	740.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	91848.0	NR_046029	629206.0	Mm.391444	NR_046029	ENSMUSG00000112533	Gm20758	-	predicted gene, 20758	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-85312100-2	chr11	85312000	85312200	+	988.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016910, intron 1 of 5)	intron (NM_016910, intron 1 of 5)	846.0	NM_016910	53892.0	Mm.45609	NM_016910	ENSMUSG00000020525	Ppm1d	AV338790|Wip1	protein phosphatase 1D magnesium-dependent, delta isoform	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70671017-2	chr8	70670953	70671153	+	760.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2178.0	NM_001359042	50783.0	Mm.248188	NM_015816	ENSMUSG00000031848	Lsm4	-	LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-46408200-4	chr18	46408101	46408301	+	997.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57615.0	NR_045438	72076.0	Mm.82766	NM_028086		Mospd4	2010013H21Rik	motile sperm domain containing 4	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-6335803-4	chr4	6335699	6335899	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA4|LINE|L1	-29881.0	NM_016807	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	2.73620338250484	2.85059817391051	3.42627798324071	1.78133298707793	2.94865063058573	3.95693965756496	3.8330395279935	2.02500358737475	0.93598347240963	0.213830929971205	0.7035593879412
Merged-chr13-54223443-4	chr13	54223346	54223546	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153432, intron 3 of 3)	intron (NR_153432, intron 3 of 3)	31313.0	NR_153432	15466.0	Mm.57243	NM_008286	ENSMUSG00000034987	Hrh2	H2R|HH2R	histamine receptor H2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-163645132-4	chr2	163645042	163645242	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_012032)	promoter-TSS (NM_012032)	1.0	NM_012032	26943.0	Mm.218473	NM_012032	ENSMUSG00000017707	Serinc3	AA959945|AA960047|AIGP1|DIFF33|TMS-1|Tde1	serine incorporator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-20103856-4	chr11	20103772	20103972	+	913.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146243, intron 1 of 8)	intron (NM_146243, intron 1 of 8)	9079.0	NM_146243	66713.0	Mm.259045	NM_146243	ENSMUSG00000020152	Actr2	4921510D23Rik|AA409782|Arp2|D6Ertd746e	ARP2 actin-related protein 2	protein-coding	1.84564954343944	1.3598257630701	1.31780694254605	3.29737476069309	2.7250837070028	2.42825527121507	3.03895352462092	2.50318142523332	0.822890963235375	0.397613570139102	0.883903683534674
Merged-chr7-81851803-3	chr7	81851714	81851914	+	763.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7187.0	NR_111910	107769.0	Mm.221412	NM_145375	ENSMUSG00000038623	Tm6sf1	AI428514|BC023123|C630016D09Rik	transmembrane 6 superfamily member 1	protein-coding	0.575703564855322	1.16892757783994	0.974471975850778	1.57398891076156	1.40833450626551	0.614013082637559	0.811056410076592	0.592491891469442	-0.915225638160566	0.562496956423424	0.960362415684079
Merged-chr15-73147117-4	chr15	73146983	73147183	+	952.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153178, intron 1 of 18)	intron (NM_153178, intron 1 of 18)	37864.0	NM_153178	239528.0	Mm.23095	NM_153178	ENSMUSG00000036698	Ago2	1110029L17Rik|2310051F07Rik|AI225898|AL022874|AW546247|Eif2c2|Gerp95|Gm10365|mKIAA4215	argonaute RISC catalytic subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-9898799-5	chr19	9898683	9898883	+	883.5200199999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016692, intron 1 of 17)	intron (NM_016692, intron 1 of 17)	750.0	NM_016692	16319.0	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-95305654-1	chr4	95305554	95305754	+	552.0	f1_c57bl6.idr	Intergenic	Intergenic	-251853.0	NM_001113412	75578.0	Mm.276098	NM_029347	ENSMUSG00000028573	Fggy	2310009E04Rik	FGGY carbohydrate kinase domain containing	protein-coding	2.66692362525612	1.60681477471534	2.65949322451686	2.29093590649357	2.38226736786894	1.61763384354456	2.84461764479467	1.27534730409326	-0.402255656886941	0.682856944576968	0.995882295196263
Merged-chr6-124932143-4	chr6	124932085	124932285	+	843.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145385, intron 2 of 8)	intron (NM_145385, intron 2 of 8)	797.0	NM_001170341	30853.0	Mm.29737	NM_145385	ENSMUSG00000030120	Mlf2	AI256856|AU018944|C77284	myeloid leukemia factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-98998141-3	chr13	98998042	98998242	+	821.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13577.0	NM_027064	69382.0	Mm.45466	NM_027064	ENSMUSG00000045022	1700024P04Rik	H2bl1|Subh2bv	RIKEN cDNA 1700024P04 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140505511-4	chr5	140505425	140505625	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021528)	promoter-TSS (NM_021528)	-84.0	NM_021528	59031.0	Mm.28934	NM_021528	ENSMUSG00000036599	Chst12	AI595374|C4S-2|C4ST2	carbohydrate sulfotransferase 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-181090329-4	chr2	181090244	181090444	+	958.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003824, intron 10 of 16)	intron (NM_001003824, intron 10 of 16)	44945.0	NM_001006668	16536.0	Mm.40615	NM_010611	ENSMUSG00000016346	Kcnq2	HNSPC|KQT2|Nmf134	potassium voltage-gated channel, subfamily Q, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-33912120-2	chr17	33912020	33912220	+	579.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355704, intron 3 of 7)	intron (NM_001355704, intron 3 of 7)	2519.0	NM_001199733	13163.0	Mm.271809	NM_007829	ENSMUSG00000002307	Daxx	-	Fas death domain-associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-40294006-3	chr8	40293910	40294110	+	978.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7057.0	NM_030610	80857.0	Mm.425526	NM_030610	ENSMUSG00000031603	Fgf20	-	fibroblast growth factor 20	protein-coding	2.8057330131935	2.78490419896819	2.53803364875465	2.46238222488538	3.24440245709637	3.46734772867386	3.58117311711238	3.96587897887843	1.59484247749406	0.00889960087633616	0.100261646549908
Merged-chr16-5256039-4	chr16	5255918	5256118	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027446)	promoter-TSS (NM_027446)	-62.0	NM_027446	70511.0	Mm.45780	NM_027446	ENSMUSG00000022544	Eef2kmt	5730409G15Rik|Fam86|Fam86a|eEF2-KMT	eukaryotic elongation factor 2 lysine methyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191338941-2	chr1	191338841	191339041	+	995.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_025864, exon 3 of 8)	exon (NM_025864, exon 3 of 8)	12976.0	NM_025864	66950.0	Mm.236300	NM_025864	ENSMUSG00000026627	Tmem206	2310028N02Rik|AI118576	transmembrane protein 206	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-6278740-4	chr15	6278650	6278850	+	988.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21039.0	NM_001008702	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-84921836-2	chr18	84921736	84921936	+	618.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13169.0	NM_015798	50764.0	Mm.28369	NM_015798	ENSMUSG00000034391	Fbxo15	AU019763|Fbx15|ecat3	F-box protein 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-39498059-1	chr8	39497959	39498159	+	611.0	f0_balb.idr	Intergenic	Intergenic	144619.0	NM_031195	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	0.452062788508704	0.471220652598899	1.2452408999797	0.460049065359655	0.816434621817278	0.949954095918331	0.907715381005932	0.460893962584681	0.351062378047996	0.84656971112123	1
Merged-chr4-62662649-2	chr4	62662549	62662749	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134257, intron 10 of 15)	intron (NM_134257, intron 10 of 15)	-11325.0	NM_001310706	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124686782-2	chr6	124686682	124686882	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_149320, intron 1 of 11)	B2_Mm2|SINE|B2	23678.0	NM_145130	14792.0	Mm.273915	NM_145130	ENSMUSG00000004270	Lpcat3	C3f|Grcc3f|Lpcat|Lpeat|Lplat5|Lpsat|Mboat5|Moact5|Oact5|PTG	lysophosphatidylcholine acyltransferase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52576281-4	chr13	52576149	52576349	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3024.0	NR_046069	100040572.0	Mm.278873	NR_046069		Gm2848	-	predicted gene 2848	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-110347888-2	chr14	110347788	110347988	+	745.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	407261.0	NM_175499	239250.0	Mm.49728	NM_175499	ENSMUSG00000045871	Slitrk6	4832410J21Rik|Sltk6	SLIT and NTRK-like family, member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-27278361-1	chr3	27278261	27278461	+	697.0	f0_balb.idr	Intergenic	Intergenic	-38716.0	NM_009425	22035.0	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81836165-3	chr15	81836063	81836263	+	923.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22163.0	NM_020507	57259.0	Mm.323595	NM_020507	ENSMUSG00000048546	Tob2	2900090N22Rik|4930545K18Rik|AV071822|mKIAA1663	transducer of ERBB2, 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-61323241-4	chr18	61323144	61323344	+	946.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_133249, exon 2 of 12)	exon (NM_133249, exon 2 of 12)	74656.0	NR_029879	723889.0		NR_029879	ENSMUSG00000105200	Mir378a	Mir378|Mirn378|mmu-mir-378|mmu-mir-378a	microRNA 378a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32151452-3	chr2	32151350	32151550	+	955.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172661, intron 1 of 29)	CpG	302.0	NM_001159634	227723.0	Mm.25504	NM_172661	ENSMUSG00000039262	Prrc2b	5830434P21Rik|AI173903|Bat2l|Bat2l1|D430039P21|mKIAA0515	proline-rich coiled-coil 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-19869009-2	chr4	19868909	19869109	+	573.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	50282.0	NM_028746	74087.0	Mm.173833	NM_028746	ENSMUSG00000041052	Slc7a13	0610009O04Rik|AGT-1|AGT1|XAT2	solute carrier family 7, (cationic amino acid transporter, y+ system) member 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-74871494-4	chr9	74871384	74871584	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008262, intron 1 of 1)	intron (NM_008262, intron 1 of 1)	9563.0	NM_008262	15379.0	Mm.303355	NM_008262	ENSMUSG00000043013	Onecut1	D9Ertd423e|HNF-6|Hfh12|Hnf6|Hnf6b|OC-1|Oc1	one cut domain, family member 1	protein-coding	0.575661468061878	1.29207994611992	1.11077112770949	1.39296770459187	0.577849792356819	1.30457265484225	0.806601804938509	0.591773430337255	-1.241196714935	0.434779339096214	0.906898906550135
Merged-chr11-76628817-4	chr11	76628736	76628936	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43634.0	NM_177182	320522.0	Mm.131585	NM_177182	ENSMUSG00000044243	Bhlha9	A830053O21Rik|Fingerin	basic helix-loop-helix family, member a9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-88384465-2	chr6	88384365	88384565	+	833.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023060, intron 1 of 6)	intron (NM_023060, intron 1 of 6)	62074.0	NM_023060	65967.0	Mm.333237	NM_023060	ENSMUSG00000033216	Eefsec	Selb|mSelB|sec	eukaryotic elongation factor, selenocysteine-tRNA-specific	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140738454-3	chr5	140738381	140738581	+	783.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173405, intron 2 of 7)	B4A|SINE|B4	14354.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-44417616-4	chr11	44417526	44417726	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17563.0	NM_001303244	16160.0	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	5.7876871562219	5.7602020016756	6.60134455881235	5.38518856452577	4.61272317329411	5.0454715469155	5.24449224967694	4.79133847439437	-1.16324955591771	0.000315322304890047	0.00764805326294633
Merged-chr17-46641280-3	chr17	46641188	46641388	+	946.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357130, intron 3 of 15)	intron (NM_001357130, intron 3 of 15)	4792.0	NM_001357130	74764.0	Mm.279599	NM_029091	ENSMUSG00000003546	Klc4	1200014P03Rik|AA408085|AW146303|Knsl8	kinesin light chain 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-129407486-4	chr6	129407385	129407585	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1377.0	NM_001205363	232414.0	Mm.391518	NM_172732	ENSMUSG00000046080	Clec9a	9830005G06Rik|DNGR-1	C-type lectin domain family 9, member a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-43415498-2	chr8	43415398	43415598	+	677.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-108489.0	NM_009556	22702.0	Mm.285848	NM_009556	ENSMUSG00000051176	Zfp42	Rex-1|Rex1|Zfp-42	zinc finger protein 42	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-189793566-2	chr1	189793466	189793666	+	636.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008976, intron 2 of 18)	ID_B1|SINE|B4	65298.0	NM_008976	19250.0	Mm.4498	NM_008976	ENSMUSG00000026604	Ptpn14	C130080N23Rik|PTP36	protein tyrosine phosphatase, non-receptor type 14	protein-coding	-2.18138529563533	-2.15523716995652	-2.1631445789866	-2.16963996020037	-2.05513010215571	-2.15352360143315	-2.16135451490766	-2.16847729006863	0.759018020146679	0.829933115115583	1
Merged-chr5-21113700-6	chr5	21113627	21113827	+	913.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-57816.0	NM_011203	19248.0	Mm.319117	NM_011203	ENSMUSG00000028771	Ptpn12	P19-PTP|PTP-P19|PTP-PEST|PTPG1	protein tyrosine phosphatase, non-receptor type 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-25493722-4	chr14	25493640	25493840	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	34555.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119050103-2	chr11	119050003	119050203	+	644.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9190.0	NM_013926	30951.0	Mm.99953	NM_013926	ENSMUSG00000025578	Cbx8	Pc3	chromobox 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-31096308-1	chr5	31096208	31096408	+	993.0	f1_balb.idr	intron (NM_001347323, intron 1 of 8)	intron (NM_001347323, intron 1 of 8)	-2781.0	NM_011773	22784.0	Mm.1396	NM_011773	ENSMUSG00000029151	Slc30a3	Znt3	solute carrier family 30 (zinc transporter), member 3	protein-coding	1.98111272603029	0.875390519759925	1.1077916003322	1.07595647412994	1.91841867477878	1.15638675037825	2.56147058257976	0.837166096144701	1.27859274029478	0.323746804971463	0.826332612263711
Merged-chr4-33244108-4	chr4	33243972	33244172	+	883.741699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	4715.0	NM_001033225	108767.0	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-5416223-4	chr15	5416116	5416316	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-80102.0	NR_045274	71432.0	Mm.291087	NR_045274	ENSMUSG00000110018	5430437J10Rik	-	RIKEN cDNA 5430437J10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-44420539-2	chr11	44420439	44420639	+	687.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RodERV21-int|LTR|ERV1	20476.0	NM_001303244	16160.0	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-8417678-2	chr5	8417578	8417778	+	694.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013726, intron 2 of 11)	RMER15|LTR|ERVL	5038.0	NM_013726	27214.0	Mm.292470	NM_013726	ENSMUSG00000002297	Dbf4	AA545217|Ask	DBF4 zinc finger	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-50304101-2	chr6	50304001	50304201	+	695.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_027881, intron 18 of 21)	intron (NM_027881, intron 18 of 21)	-42332.0	NM_018769	54722.0	Mm.248361	NM_018769	ENSMUSG00000029821	Gsdme	2310037D07Rik|4932441K13Rik|Dfna5|Dfna5h|EG14210|Fin15	gasdermin E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-29300507-1	chr7	29300407	29300607	+	544.0	f1_balb.idr	Intergenic	Intergenic	-3498.0	NM_013874	29861.0	Mm.101885	NM_013874	ENSMUSG00000030584	Dpf1	Neud4	D4, zinc and double PHD fingers family 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-95146257-3	chr11	95146138	95146338	+	654.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007867)	promoter-TSS (NM_007867)	-437.0	NM_007867	13394.0	Mm.439766	NM_007867	ENSMUSG00000020871	Dlx4	Dlx-4|Dlx7	distal-less homeobox 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-120149747-2	chr7	120149647	120149847	+	773.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4456.0	NM_011775	22787.0	Mm.6510	NM_011775	ENSMUSG00000030911	Zp2	Zp-2	zona pellucida glycoprotein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116433950-4	chr11	116433815	116434015	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_003376)	promoter-TSS (NR_003376)	-179.0	NM_176902	319370.0	Mm.258466	NM_176902	ENSMUSG00000050628	Ubald2	1110014K08Rik|D030012E24Rik|Fam100b	UBA-like domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-69225656-2	chr17	69225556	69225756	+	971.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355736, intron 3 of 21)	intron (NM_001355736, intron 3 of 21)	51550.0	NR_045428	69750.0	Mm.439063	NR_045428	ENSMUSG00000100572	2410021H03Rik	-	RIKEN cDNA 2410021H03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-35037091-2	chr12	35036991	35037191	+	623.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2B|LINE|L1	-10098.0	NM_001014973	217463.0	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	-0.22216178406131	-0.557959526716166	-0.561031796310318	-0.170050259502206	-0.316853073393015	-0.557264225668876	-0.560355911039017	-0.562977561848395	-1.49535093513305	0.580463680710848	1
Merged-chr6-134897505-3	chr6	134897434	134897634	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029441)	promoter-TSS (NR_029441)	291.0	NM_001167695	14760.0	Mm.4787	NM_008157	ENSMUSG00000032641	Gpr19	-	G protein-coupled receptor 19	protein-coding	-2.18308165884198	-2.15547475440471	-2.16382331017202	-2.1706810624505	-2.18114370519566	-2.15366558754311	-2.03057248461154	-2.16945352807143	0.759018020146679	0.829933115115583	1
Merged-chr4-148159215-2	chr4	148159115	148159315	+	547.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_104375)	promoter-TSS (NR_104375)	374.0	NM_001161851	230903.0	Mm.220327	NM_173401	ENSMUSG00000029001	Fbxo44	5730411K09|AV001623|FBG3|FBX30|Fbx6a|Fbxo6a	F-box protein 44	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-76068116-3	chr3	76068017	76068217	+	908.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6444.0	NM_178673	213262.0	Mm.379337	NM_178673	ENSMUSG00000034098	Fstl5	9130207J01Rik	follistatin-like 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33966973-4	chr16	33966890	33967090	+	994.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009471)	promoter-TSS (NM_009471)	48.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-31614799-2	chr5	31614699	31614899	+	864.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_025796, intron 2 of 3)	Tigger5b|DNA|TcMar-Tigger	848.0	NM_025796	66845.0	Mm.120763	NM_025796	ENSMUSG00000106918	Mrpl33	0610009M10Rik|L33mt|MRP-L33	mitochondrial ribosomal protein L33	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-38210565-2	chr18	38210465	38210665	+	817.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029357)	promoter-TSS (NM_029357)	-803.0	NM_029357	75599.0	Mm.36560	NM_029357	ENSMUSG00000051375	Pcdh1	2010005A06Rik|AI585920	protocadherin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70402600-4	chr14	70402486	70402686	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021308, intron 10 of 22)	B3A|SINE|B2	26508.0	NM_021308	57746.0	Mm.85253	NM_021308	ENSMUSG00000033644	Piwil2	Piwil1l|mili	piwi-like RNA-mediated gene silencing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56301667-2	chr17	56301567	56301767	+	693.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	-1381.0	NM_029799	76920.0	Mm.329132	NM_029799	ENSMUSG00000073380	Arrdc5	1700013E09Rik	arrestin domain containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126549684-1	chr7	126549584	126549784	+	542.0	f1_balb.idr	intron (NM_146200, intron 16 of 20)	RMER17A2|LTR|ERVK	16682.0	NM_146200	56347.0	Mm.22776	NM_146200	ENSMUSG00000030738	Eif3c	110kDa|3230401O13Rik|Eif3s8|NIPIL(A3)|NipilA3|Xs|Xsl	eukaryotic translation initiation factor 3, subunit C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-80233966-4	chr15	80233861	80234061	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178719)	promoter-TSS (NM_178719)	-119.0	NM_001357659	239555.0	Mm.307163	NM_178719	ENSMUSG00000022412	Mief1	A230016E22|AI452372|Smcr7l	mitochondrial elongation factor 1	protein-coding	6.81245012057661	6.66896496473157	6.87118892096063	6.87358631316834	6.87099320546475	6.9461709310815	7.40909331812298	6.991186467454	0.272412983512623	0.132529144889625	0.56965059005937
Merged-chr15-76251920-4	chr15	76251813	76252013	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3722.0	NR_105918	102465575.0		NR_105918	ENSMUSG00000098625	Mir6953	Gm27738|mmu-mir-6953	microRNA 6953	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-7064066-2	chr19	7063966	7064166	+	586.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_134147, intron 1 of 10)	B2_Mm2|SINE|B2	7298.0	NM_134147	107227.0	Mm.439977	NM_134147	ENSMUSG00000036278	Macrod1	AI604841|AW743046|D930010J01Rik|Lrp16	MACRO domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-74880589-2	chr17	74880489	74880689	+	569.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-124940.0	NM_019919	268977.0	Mm.269747	NM_019919	ENSMUSG00000001870	Ltbp1	9430031G15Rik|9830146M04|Ltbp-1|Ltbp1L|TGF-beta1-BP-1|Tgfb|b2b1000Clo	latent transforming growth factor beta binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44586789-1	chr9	44586689	44586889	+	586.0	f1_balb.idr	Intergenic	Lx8|LINE|L1	-18103.0	NM_001110826	13209.0	Mm.267061	NM_007841	ENSMUSG00000032097	Ddx6	1110001P04Rik|C430015D01Rik|E230023J21Rik|HLR2|mRCK/P54|p54|rck	DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-149076159-4	chr4	149076112	149076312	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019781, intron 1 of 8)	intron (NM_019781, intron 1 of 8)	23600.0	NM_019781	56273.0	Mm.184172	NM_019781	ENSMUSG00000028975	Pex14	Pex14p|R75137	peroxisomal biogenesis factor 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-55406777-4	chr1	55406672	55406872	+	784.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114663, intron 1 of 5)	intron (NM_001114663, intron 1 of 5)	826.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-24634449-4	chr10	24634346	24634546	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39004.0	NM_010217	14219.0	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-151141761-2	chr4	151141661	151141861	+	759.674988	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081557, intron 9 of 23)	intron (NM_001081557, intron 9 of 23)	52191.0	NM_001308446	105704528.0	Mm.415128	NM_001308446	ENSMUSG00000078491	Gm13090	-	predicted gene 13090	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70821734-4	chr8	70821689	70821889	+	873.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008353)	TTS (NM_008353)	13340.0	NM_008353	16161.0	Mm.731	NM_008353	ENSMUSG00000000791	Il12rb1	CD212|IL-12R[b]	interleukin 12 receptor, beta 1	protein-coding	2.27533047477033	2.23418793815259	2.37441494705535	2.20849779892377	1.76649839269288	2.36916916195186	1.30049036971588	1.8491355402395	-1.02659853044471	0.27836573670788	0.781877485457278
Merged-chr6-122591576-1	chr6	122591476	122591676	+	544.0	f0_balb.idr	intron (NM_031159, intron 3 of 7)	intron (NM_031159, intron 3 of 7)	10868.0	NM_031159	11810.0	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-101736218-4	chr13	101736128	101736328	+	779.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077495, intron 2 of 15)	intron (NM_001077495, intron 2 of 15)	31989.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-34519415-4	chr19	34519313	34519513	+	926.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111100, intron 3 of 9)	intron (NM_001111100, intron 3 of 9)	8061.0	NM_001111100	16889.0	Mm.157545	NM_021460	ENSMUSG00000024781	Lipa	AA960673|Lal|Lip-1|Lip1	lysosomal acid lipase A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-34794010-4	chr13	34793931	34794131	+	990.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	54389.0	NM_138746	108161.0	Mm.41991	NM_138746	ENSMUSG00000038246	Fam50b	D0H6S2654E|X5L|XAP-5-like	family with sequence similarity 50, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-56655406-2	chr19	56655306	56655506	+	599.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66966.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-50109034-3	chr15	50108872	50109072	+	979.2777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	780077.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	2.68366484218002	2.57930624424166	1.03717483590761	2.95378433862145	1.2184757169414	1.37819135273783	1.04476424173004	1.68981659093186	-2.9641265031143	0.00906725313073158	0.101482185692647
Merged-chr2-155726524-1	chr2	155726424	155726624	+	630.0	f1_c57bl6.idr	intron (NM_145537, intron 3 of 10)	intron (NM_145537, intron 3 of 10)	2951.0	NM_145537	108687.0	Mm.273706	NM_145537	ENSMUSG00000038312	Edem2	9530090G24Rik|AI327354	ER degradation enhancer, mannosidase alpha-like 2	protein-coding	0.555212392517583	0.121094295321537	0.115825856683041	0.517306234743932	0.106061624990752	0.600561791432612	0.433654575372455	0.112479973353196	-0.101447464374316	0.960595642635862	1
Merged-chr2-165886958-2	chr2	165886858	165887058	+	621.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2120.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-69502545-3	chr12	69502437	69502637	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26987.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	6.78516282594741	6.85313040401012	5.52595546311004	6.08507912012436	5.90940784115614	5.94444503180129	5.40896754515494	5.92117076790459	-0.655028171616184	0.0235339554052018	0.200635052310477
Merged-chr19-6665499-4	chr19	6665405	6665605	+	830.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-122435.0	NM_009203	20521.0	Mm.391146	NM_009203	ENSMUSG00000061742	Slc22a12	AI987855|OAT4L|Rst|Slc22al2|URAT1	solute carrier family 22 (organic anion/cation transporter), member 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91874356-2	chr16	91874256	91874456	+	749.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010587, intron 28 of 38)	intron (NM_010587, intron 28 of 38)	57274.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-60749777-2	chr18	60749677	60749877	+	776.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1112.0	NM_008306	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-47406700-4	chr19	47406581	47406781	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008018, intron 2 of 14)	ID_B1|SINE|B4	57730.0	NM_001164717	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	0.169974921124108	0.22951676779461	1.89811514696151	0.19604824667755	0.17396473394406	0.233584470591451	1.92017820636478	0.198694761648558	0.0414054038209894	0.989916892079963	0.998431161219273
Merged-chr14-114946524-4	chr14	114946427	114946627	+	903.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_126548)	promoter-TSS (NR_126548)	-579.0	NR_126548	74982.0		NR_126548	ENSMUSG00000115372	1700100I10Rik	1700085D13Rik|4930481K08Rik	RIKEN cDNA 1700100I10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-99353657-2	chr9	99353557	99353757	+	565.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177775, intron 1 of 22)	intron (NM_177775, intron 1 of 22)	4873.0	NM_177775	272636.0	Mm.490440	NM_177775	ENSMUSG00000037681	Esyt3	D930024E11|D9Ertd280e|Fam62c|mKIAA4186	extended synaptotagmin-like protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-108742255-4	chr6	108742116	108742316	+	686.483337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-40843.0	NM_026011	67166.0	Mm.271178	NM_026011	ENSMUSG00000030105	Arl8b	2610313E07Rik|3100002J04Rik|Arl10c|gie1	ADP-ribosylation factor-like 8B	protein-coding	0.549208006563441	0.639935698819026	1.7733792360374	0.382255391839984	0.710795603519649	0.405448175689684	0.800621738926059	0.592173739734947	-1.58698848857081	0.317782987286342	0.8209499039712
Merged-chr17-65843101-1	chr17	65843001	65843201	+	543.0	f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	41822.0	NM_001198949	19765.0	Mm.17009	NM_009067	ENSMUSG00000024096	Ralbp1	RLIP76|Rip1	ralA binding protein 1	protein-coding	2.46292014522092	2.12721802915645	1.28496074419718	2.23657267596549	2.40730991742039	2.51274949833045	1.29173123975239	2.35108621074841	0.290871545989131	0.774792927858981	0.998431161219273
Merged-chr10-42637018-4	chr10	42636929	42637129	+	780.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41887.0	NM_172416	14628.0	Mm.46636	NM_172416	ENSMUSG00000038280	Ostm1	1200002H13Rik|HSPC019|gl	osteopetrosis associated transmembrane protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-32783245-4	chr14	32783145	32783345	+	885.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2718.0	NM_001163616	69069.0	Mm.261609	NM_001163616	ENSMUSG00000041707	1810011H11Rik	4733401I05Rik	RIKEN cDNA 1810011H11 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-123227732-4	chr6	123227625	123227825	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2118.0	NM_001190320	56620.0	Mm.271782	NM_020001	ENSMUSG00000023349	Clec4n	Clec6a|Clecsf10|Nkcl	C-type lectin domain family 4, member n	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-144307206-4	chr1	144307109	144307309	+	996.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58105.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-102318838-4	chr11	102318722	102318922	+	743.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011551, intron 1 of 20)	CpG-2669	274.0	NM_001302955	21429.0	Mm.2845	NM_011551	ENSMUSG00000020923	Ubtf	A930005G04Rik|NOR-90|Tcfubf|UBF|UBF-1|UBF1	upstream binding transcription factor, RNA polymerase I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117727326-4	chr11	117727221	117727421	+	948.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198022, intron 5 of 21)	intron (NM_198022, intron 5 of 21)	52327.0	NR_154387	217353.0	Mm.286963	NM_145439	ENSMUSG00000025572	Tmc6	D11Ertd204e|EVER1	transmembrane channel-like gene family 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-118779697-4	chr2	118779612	118779812	+	911.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_170593)	promoter-TSS (NM_170593)	-7.0	NM_170593	214240.0	Mm.221499	NM_170593	ENSMUSG00000040035	Disp2	AI840597|B230210L08Rik|DispB|mKIAA1742	dispatched RND tramsporter family member 2	protein-coding	-1.17367364971587	-1.14665061133654	-1.15856004380685	-1.16834280623128	-1.17310571790619	-1.14406978763884	-0.42938571406771	-1.16659169643457	2.89727187181404	0.396361616615464	1
Merged-chr9-22530890-4	chr9	22530807	22531007	+	924.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360259, intron 5 of 22)	intron (NM_001360259, intron 5 of 22)	55192.0	NM_181316	319845.0	Mm.176725	NM_178415	ENSMUSG00000035919	Bbs9	E130103I17Rik	Bardet-Biedl syndrome 9 (human)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-10565685-3	chr16	10565582	10565782	+	787.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177562, intron 3 of 22)	intron (NM_177562, intron 3 of 22)	20343.0	NM_001204229	74374.0	Mm.159176	NM_177562	ENSMUSG00000068663	Clec16a	4932416N17Rik|curt|mKIAA0350	C-type lectin domain family 16, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44375840-2	chr7	44375684	44375884	+	886.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027049)	promoter-TSS (NM_027049)	-754.0	NM_027049	69349.0	Mm.358922	NM_027049	ENSMUSG00000008028	1700008O03Rik	-	RIKEN cDNA 1700008O03 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35295981-2	chr17	35295881	35296081	+	778.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24566.0	NM_010390	15006.0	Mm.466882	NM_010390	ENSMUSG00000079507	H2-Q1	H-2Q1|Q1|Q1b|Q1d|Q1k|Qa-1|Qa1|Qed-1	histocompatibility 2, Q region locus 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85569570-3	chr12	85569519	85569719	+	861.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29486.0	NM_001205052	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-9268565-1	chr11	9268465	9268665	+	551.0	f1_c57bl6.idr	intron (NM_178259, intron 9 of 61)	intron (NM_178259, intron 9 of 61)	76623.0	NM_178259	268379.0	Mm.39270	NM_178259	ENSMUSG00000004668	Abca13	9830132L24|A930002G16Rik|AI956815	ATP-binding cassette, sub-family A (ABC1), member 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89903295-2	chr3	89903195	89903395	+	662.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010559, intron 1 of 9)	intron (NM_010559, intron 1 of 9)	9901.0	NM_001310676	16194.0	Mm.2856	NM_010559	ENSMUSG00000027947	Il6ra	CD126|IL-6R|IL-6R-alpha|IL-6RA|Il6r	interleukin 6 receptor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-57707914-4	chr6	57707815	57708015	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133737, intron 1 of 8)	L1_Mur3|LINE|L1	5460.0	NM_133737	71835.0	Mm.274904	NM_133737	ENSMUSG00000062190	Lancl2	1700003F10Rik	LanC (bacterial lantibiotic synthetase component C)-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-84159051-2	chr12	84158951	84159151	+	863.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001163502, exon 8 of 13)	exon (NM_001163502, exon 8 of 13)	-10562.0	NM_027438	70481.0	Mm.444348	NM_027438	ENSMUSG00000054383	Pnma1	5730402C15Rik	paraneoplastic antigen MA1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-17186399-4	chr10	17186346	17186546	+	770.799988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-90664.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-106737039-3	chr8	106736939	106737139	+	775.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173037, intron 12 of 17)	L2b|LINE|L2	53971.0	NM_173037	272538.0	Mm.87151	NM_173037	ENSMUSG00000041949	Tango6	AW413431|E330010G16|Tmco7	transport and golgi organization 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-54746114-1	chr3	54746014	54746214	+	603.0	f1_c57bl6.idr	intron (NM_025442, intron 7 of 9)	intron (NM_025442, intron 7 of 9)	-9468.0	NM_019483	55994.0	Mm.244353	NM_019483	ENSMUSG00000027796	Smad9	MADH6|Madh8|Madh9|Smad8	SMAD family member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-101655063-3	chr13	101654931	101655131	+	606.944458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37599.0	NM_001024955	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-60846877-2	chr18	60846777	60846977	+	836.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011552, intron 1 of 24)	L2a|LINE|L2	2087.0	NM_011552	21453.0	Mm.486251	NM_011552	ENSMUSG00000024613	Tcof1	AA408847|AW209012|treacle	treacle ribosome biogenesis factor 1	protein-coding	-1.7024385483431	-1.81249224917775	-1.82134771053534	-1.82862185015837	-1.70038292649591	-1.81057323376012	-1.81934302819017	-1.82731978264371	0.0376840119903864	0.991491645451152	1
Merged-chr2-158361213-1	chr2	158361113	158361313	+	696.0	f0_balb.idr	intron (NR_015463, intron 1 of 5)	intron (NR_015463, intron 1 of 5)	296.0	NR_015463	68108.0	Mm.119198	NR_015463		Snhg17	9430008C03Rik	small nucleolar RNA host gene 17	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-143920227-2	chr1	143920127	143920327	+	575.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	83922.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115467646-2	chr11	115467546	115467746	+	616.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359609, intron 2 of 2)	intron (NM_001359609, intron 2 of 2)	3846.0	NM_001359609	217316.0	Mm.25773	NM_001080934	ENSMUSG00000045775	Slc16a5	A130015N09Rik|MCT 5|MCT 6|MCT5	solute carrier family 16 (monocarboxylic acid transporters), member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-90765417-2	chr5	90765317	90765517	+	751.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-3101.0	NM_023785	57349.0	Mm.293614	NM_023785	ENSMUSG00000029372	Ppbp	2400003M24Rik|AI854500|CTAP3|CTAPIII|Cxcl7|LA-PF4|LDGF|MDGF|NAP-2|NAP-2-L1|Scyb7|TGB|TGB1|THBGB1|b-TG1|beta-TG	pro-platelet basic protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-42518797-4	chr19	42518719	42518919	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177464)	promoter-TSS (NM_177464)	14.0	NM_177464	52013.0	Mm.254169	NM_177464	ENSMUSG00000025184	R3hcc1l	1700036B12Rik|AI450607|C10orf28|D19Ertd386e|GIDRP86|Gidrp88	R3H domain and coiled-coil containing 1 like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-128768344-4	chr4	128768254	128768454	+	879.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001009819, exon 5 of 5)	3' UTR (NM_001009819, exon 5 of 5)	9096.0	NM_001009819	215493.0	Mm.300900	NM_001009819	ENSMUSG00000028794	A3galt2	Gm433|iGb3|iGb3S	alpha 1,3-galactosyltransferase 2 (isoglobotriaosylceramide synthase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140742053-4	chr5	140741974	140742174	+	840.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173405, intron 3 of 7)	intron (NM_173405, intron 3 of 7)	17947.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-103378253-4	chr3	103378174	103378374	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER57D|LTR|ERV1	98981.0	NM_053170	94093.0	Mm.195036	NM_053170	ENSMUSG00000033014	Trim33	8030451N04Rik|AI413936|Ecto|Tif1g	tripartite motif-containing 33	protein-coding	3.52871306988226	4.25703540682592	3.87575544901446	3.65632541224428	1.69754234670319	1.95313455558414	2.5138023153238	3.06047525612064	-2.37927643132981	0.000355364864776021	0.00840407552085946
Merged-chr15-14184135-1	chr15	14184035	14184235	+	851.0	f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-1010460.0	NM_007666	12563.0	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	1.83092964648029	2.28531225946795	1.49283057782855	2.3306649127687	2.05578415793086	1.91128308609744	2.11516178058922	1.64612513775103	-0.244184484358736	0.798757251968848	0.998431161219273
Merged-chr7-28634278-2	chr7	28634178	28634378	+	750.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3263.0	NM_175319	101744.0	Mm.26022	NM_175319	ENSMUSG00000037469	Acp7	AU017076|C330005M16Rik|Papl	acid phosphatase 7, tartrate resistant	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-149636341-4	chr5	149636225	149636425	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013559)	promoter-TSS (NM_013559)	-10.0	NM_013559	15505.0	Mm.270681	NM_013559	ENSMUSG00000029657	Hsph1	105kDa|AI790491|Hsp105|Hsp110|hsp-E7I|hsp110/105	heat shock 105kDa/110kDa protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-83149175-4	chr15	83149070	83149270	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_004432)	promoter-TSS (NR_004432)	208.0	NM_178627	73826.0	Mm.23758	NM_178627	ENSMUSG00000041815	Poldip3	1110008P04Rik|AA408269|AL022852|C77954|PDIP46|SKAR|mKIAA1649	polymerase (DNA-directed), delta interacting protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-111272515-2	chr9	111272415	111272615	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026810)	promoter-TSS (NM_026810)	670.0	NM_175266	77781.0	Mm.209005	NM_175266	ENSMUSG00000046785	Epm2aip1	A930003G21Rik|mKIAA0766	EPM2A (laforin) interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-132129102-2	chr1	132129002	132129202	+	697.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008795, intron 1 of 15)	B1F2|SINE|Alu	10583.0	NM_008795	18557.0	Mm.28130	NM_008795	ENSMUSG00000026437	Cdk18	AA682070|Ctk18|Pctk3	cyclin-dependent kinase 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-54667172-2	chr13	54667073	54667273	+	622.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20635.0	NM_001146025	105239.0	Mm.25366	NM_134064	ENSMUSG00000034928	Rnf44	AI854545|mKIAA1100	ring finger protein 44	protein-coding	-0.413270832553205	0.248879758316469	-0.403519686790488	-0.4071766335812	-0.41236239857827	0.260274020124072	-0.402476173372258	-0.406537021983025	0.0394809277679939	0.98817139586833	1
Merged-chr3-107155805-1	chr3	107155705	107155905	+	859.1666869999999	f0_balb.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-27338.0	NM_001081140	242151.0	Mm.245155	NM_001081140	ENSMUSG00000042861	Kcna10	Gm1962|Kcna8|Kv1.8	potassium voltage-gated channel, shaker-related subfamily, member 10	protein-coding	2.05611131950829	1.28880945627636	1.25004161629163	1.48277067983645	2.96578344431614	2.80593810168302	2.61204918402765	2.93047615899561	3.06182174860356	0.00148699471816126	0.0268959235605509
Merged-chr16-4685272-3	chr16	4685135	4685335	+	802.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001135112, intron 1 of 10)	B3A|SINE|B2	1165.0	NM_001135112	83945.0	Mm.248337	NM_023646	ENSMUSG00000004069	Dnaja3	1200003J13Rik|1810053A11Rik|C81173|Tid-1|Tid1l	DnaJ heat shock protein family (Hsp40) member A3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-94703599-4	chr8	94703502	94703702	+	978.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7360.0	NM_026385	67801.0	Mm.279977	NM_026385	ENSMUSG00000031775	Pllp	0610010I06Rik|AV001002|Plapi|Tm4sf11	plasma membrane proteolipid	protein-coding	0.260978112897378	0.110198789136463	1.25904651100331	0.0939766769449117	0.0837434886568609	0.112229157531761	0.103120532698349	0.954080769197966	-0.805815727646673	0.695441516880597	1
Merged-chr7-110717174-2	chr7	110717074	110717274	+	571.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-51032.0	NM_001276301	11717.0	Mm.3238	NM_009667	ENSMUSG00000005686	Ampd3	-	adenosine monophosphate deaminase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-64263780-2	chr15	64263680	64263880	+	571.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 3 of 28)	intron (NM_001276461, intron 3 of 28)	48893.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-66560642-2	chr15	66560542	66560742	+	877.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172514, intron 1 of 9)	intron (NM_172514, intron 1 of 9)	404.0	NM_172514	213068.0	Mm.132299	NM_172514	ENSMUSG00000036944	Tmem71	AI661017|E430024D12	transmembrane protein 71	protein-coding	2.00427528796178	3.26951791311249	3.15972977706403	2.85908854673999	1.49309618293985	1.67498729341563	2.03960996837136	2.13250240539938	-2.29200660097918	0.00811566638452996	0.0938070956470043
Merged-chr14-31423282-4	chr14	31423180	31423380	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011894, intron 2 of 8)	intron (NM_011894, intron 2 of 8)	-5603.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65569647-4	chr9	65569563	65569763	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153119, intron 2 of 5)	intron (NM_153119, intron 2 of 5)	10424.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-117019201-2	chr13	117019101	117019301	+	741.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081009, intron 3 of 26)	Tigger5|DNA|TcMar-Tigger	6315.0	NM_001081009	52552.0	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	-1.05924887612571	-1.03858042765653	-1.05033395428885	-0.886399107518934	-1.05872377538034	-1.0360333894043	-0.460517020109407	-1.0553455049382	1.85106656526495	0.559987859580616	1
Merged-chr2-155336442-3	chr2	155336334	155336534	+	856.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004721, intron 3 of 11)	intron (NM_001004721, intron 3 of 11)	-20383.0	NR_030475	735287.0		NR_030475	ENSMUSG00000076216	Mir695	Mirn695|mmu-mir-695	microRNA 695	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-45557085-2	chr15	45556985	45557185	+	651.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-442151.0	NM_026200	67498.0	Mm.300079	NM_026200	ENSMUSG00000022342	Kcnv1	2700023A03Rik|vibe	potassium channel, subfamily V, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-114851996-3	chr9	114851897	114852097	+	923.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7845.0	NM_027294	70031.0	Mm.150064	NM_027294	ENSMUSG00000041012	Cmtm8	2700018N07Rik|AA408515|Cklfsf8	CKLF-like MARVEL transmembrane domain containing 8	protein-coding	1.5125532216975	1.09140302940642	1.89243969790915	1.05561406750611	1.852843754575	2.09111380592489	1.78637306065398	1.9513240033517	1.53620920033507	0.17956022891364	0.650961684137758
Merged-chr2-58197058-4	chr2	58196934	58197134	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA6|LINE|L1	33060.0	NR_045895	100042926.0	Mm.446515	NR_045895	ENSMUSG00000086862	Gm13546	-	predicted gene 13546	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69107933-2	chr11	69107833	69108033	+	759.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_011065, exon 21 of 23)	exon (NM_011065, exon 21 of 23)	7781.0	NM_001159367	18626.0	Mm.7373	NM_011065	ENSMUSG00000020893	Per1	Hftm|Per|m-rigui|mPer1	period circadian clock 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30970909-2	chr7	30970809	30971009	+	745.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164184, intron 2 of 8)	ZP3AR|Satellite|Satellite	2560.0	NM_001164185	54135.0	Mm.4067	NM_017405	ENSMUSG00000001247	Lsr	ILDR3|Lisch7	lipolysis stimulated lipoprotein receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-101156377-2	chr4	101156277	101156477	+	730.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_146145, intron 22 of 24)	intron (NM_146145, intron 22 of 24)	87339.0	NM_183024	242570.0	Mm.185636	NM_183024	ENSMUSG00000035275	Raver2	A430091O22Rik	ribonucleoprotein, PTB-binding 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-57240038-2	chr2	57239938	57240138	+	572.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010274, intron 1 of 16)	B2_Mm1t|SINE|B2	1656.0	NM_010274	14571.0	Mm.3711	NM_010274	ENSMUSG00000026827	Gpd2	AA408484|AI448216|AU021455|AW494132|GPDH|Gdm1|Gpd-m|Gpdh-m|TISP38	glycerol phosphate dehydrogenase 2, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-36934951-4	chr16	36934818	36935018	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008225)	promoter-TSS (NM_008225)	-65.0	NM_008225	15163.0	Mm.4091	NM_008225	ENSMUSG00000022831	Hcls1	AW213261|HS1	hematopoietic cell specific Lyn substrate 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80244489-2	chr10	80244389	80244589	+	889.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_023431, exon 14 of 14)	3' UTR (NM_023431, exon 14 of 14)	-4963.0	NM_029272	75406.0	Mm.28712	NM_029272	ENSMUSG00000020153	Ndufs7	1010001M04Rik	NADH dehydrogenase (ubiquinone) Fe-S protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-83566748-4	chr8	83566655	83566855	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025843)	promoter-TSS (NM_025843)	-3.0	NM_025843	66916.0	Mm.29683	NM_025843	ENSMUSG00000033938	Ndufb7	1110002H15Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7	protein-coding	3.71738126857488	4.24504634328091	4.81434465638281	4.90776507023818	4.25740171537889	4.77939380087116	3.83520545426113	4.75374957401772	-0.0528509643390623	0.903019932561616	0.998431161219273
Merged-chr7-67242654-3	chr7	67242507	67242707	+	916.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291195, intron 8 of 10)	L1_Mus1|LINE|L1	19991.0	NM_001191051	75099.0	Mm.121691	NM_175215	ENSMUSG00000043831	Lysmd4	4930506D23Rik	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-130824487-1	chr4	130824387	130824587	+	543.0	f1_balb.idr	3' UTR (NM_011520, exon 5 of 5)	3' UTR (NM_011520, exon 5 of 5)	31950.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-62551304-2	chr10	62551204	62551404	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-23859.0	NM_001358965	19073.0	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-121036198-2	chr14	121036098	121036298	+	742.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_134082, intron 1 of 26)	CpG	624.0	NM_134082	223254.0	Mm.223980	NM_134082	ENSMUSG00000025555	Farp1	AW228844|BC030329|Cdep	FERM, RhoGEF (Arhgef) and pleckstrin domain protein 1 (chondrocyte-derived)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-61943763-2	chr9	61943663	61943863	+	682.416687	f1_balb.idr|f1_c57bl6.idr	intron (NM_024245, intron 3 of 22)	intron (NM_024245, intron 3 of 22)	3036.0	NM_024245	71819.0	Mm.259374	NM_024245	ENSMUSG00000032254	Kif23	3110001D19Rik|C87313|CHO1|Knsl5|MKLP-1|MKLP1	kinesin family member 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-41119123-2	chr4	41119023	41119223	+	630.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_139236, intron 15 of 25)	intron (NM_139236, intron 15 of 25)	5216.0	NM_139236	230082.0	Mm.285797	NM_139236	ENSMUSG00000028430	Nol6	AA410091|Nrap	nucleolar protein family 6 (RNA-associated)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95707700-4	chr3	95707601	95707801	+	939.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19784.0	NM_001301705	229595.0	Mm.490574	NM_144899	ENSMUSG00000015850	Adamtsl4	ADAMTSL-4|Tsrc1	ADAMTS-like 4	protein-coding	-1.17548259612893	-1.15151556669643	-0.993759823691155	-1.17101671941623	-0.697239103652171	-1.14919542171728	-1.15979835608045	-1.16944248224289	1.47493997988595	0.655975420262184	1
Merged-chr16-89862577-2	chr16	89862477	89862677	+	582.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009384, intron 8 of 27)	intron (NM_009384, intron 8 of 27)	-44225.0	NM_001145887	21844.0	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76644933-2	chr15	76644833	76645033	+	641.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_019396, exon 5 of 5)	3' UTR (NM_019396, exon 5 of 5)	-5004.0	NM_183091	72749.0	Mm.358749	NM_183091	ENSMUSG00000059323	Tonsl	2810439M11Rik|Nfkbil2	tonsoku-like, DNA repair protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-148997633-2	chr4	148997555	148997755	+	733.25	f0_balb.idr|f1_balb.idr	intron (NM_019781, intron 3 of 8)	L2a|LINE|L2	-45333.0	NR_154553	108168987.0	Mm.393596	NR_154553		Gm13205	AA408865	predicted gene 13205	ncRNA	0.0511816617295508	-0.0843658410031092	0.711274040695936	-0.0947722402291801	-0.101220312007701	-0.0830476686727607	-0.0889340613254812	0.578044064586389	-0.538776969396879	0.813041665791438	1
Merged-chr4-59895372-3	chr4	59895273	59895473	+	891.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172468, intron 8 of 8)	B2_Mm2|SINE|B2	19683.0	NM_021053	30936.0	Mm.284433	NM_021053	ENSMUSG00000028386	Slc46a2	5430429N04Rik|Ly110|TSO-1C12|Tscot	solute carrier family 46, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-114461426-2	chr5	114461326	114461526	+	772.333374	f1_balb.idr|f1_c57bl6.idr	TTS (NM_023556)	TTS (NM_023556)	17157.0	NM_023556	17855.0	Mm.28088	NM_023556	ENSMUSG00000041939	Mvk	2310010A05Rik|AI256848|AI414037|MK	mevalonate kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91081681-4	chr16	91081586	91081786	+	873.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12541.0	NM_028905	74387.0	Mm.236220	NM_028905	ENSMUSG00000039851	4932438H23Rik	4931406G06Rik|AI550392	RIKEN cDNA 4932438H23 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-120075645-4	chr1	120075540	120075740	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1860.0	NM_019432	170706.0	Mm.24750	NM_019432	ENSMUSG00000050777	Tmem37	AI173373|AW540203|Pr|Pr1	transmembrane protein 37	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41345656-4	chr19	41345550	41345750	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 2 of 16)	intron (NM_031376, intron 2 of 16)	39420.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95658141-4	chr3	95658039	95658239	+	972.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008562)	promoter-TSS (NM_008562)	-582.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-146829697-3	chr5	146829591	146829791	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3199.0	NM_019647	19933.0	Mm.316592	NM_019647	ENSMUSG00000041453	Rpl21	8430440E03Rik|L21	ribosomal protein L21	protein-coding	4.31188822294379	3.90015543004318	4.14360819265831	3.53748269099331	2.89659215709167	1.61126473710523	1.54304102225412	2.56794042623861	-2.76794838678266	5.60409939477832e-05	0.0019247514657982
Merged-chr6-54593256-4	chr6	54593157	54593357	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153573)	promoter-TSS (NM_153573)	-129.0	NM_153573	231997.0	Mm.274693	NM_153573	ENSMUSG00000038074	Fkbp14	BC029109|FKBP-14|FKBP22	FK506 binding protein 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26231233-4	chr17	26231123	26231323	+	968.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001206335, intron 1 of 12)	intron (NM_001206335, intron 1 of 12)	13019.0	NM_207217	106581.0	Mm.28844	NM_207217	ENSMUSG00000024187	Fam234a	Itfg3	family with sequence similarity 234, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-7020299-4	chr19	7020158	7020358	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153795)	promoter-TSS (NM_153795)	-789.0	NM_001362399	108101.0	Mm.157591	NM_153795	ENSMUSG00000024965	Fermt3	C79673|Kindlin3	fermitin family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-10398222-2	chr17	10398122	10398322	+	569.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57994.0	NR_077239	319750.0	Mm.383485	NR_077237	ENSMUSG00000089633	A230009B12Rik	-	RIKEN cDNA A230009B12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-75437758-4	chr9	75437665	75437865	+	860.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-3759.0	NM_001039522	235497.0	Mm.41508	NM_001006122	ENSMUSG00000042487	Leo1	Gm185	Leo1, Paf1/RNA polymerase II complex component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-17727814-3	chr11	17727708	17727908	+	939.0277710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	226067.0	NM_026576	68145.0	Mm.178684	NM_026576	ENSMUSG00000016984	Etaa1	5730466H23Rik|AA672646	Ewing tumor-associated antigen 1	protein-coding	3.06021648546696	2.53075482379301	3.40727716863597	3.31244910266117	3.62911248159221	3.63191879531775	4.02132736335461	2.82460544226312	0.747882429389052	0.208516294361086	0.697651561557254
Merged-chr6-52919207-3	chr6	52919114	52919314	+	819.888855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173406, intron 1 of 4)	intron (NM_173406, intron 1 of 4)	-9594.0	NM_001168277	231986.0	Mm.386865	NM_173406	ENSMUSG00000063568	Jazf1	AI591476|C820002C15|Jaz1|Tip27	JAZF zinc finger 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-54985198-4	chr12	54985095	54985295	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013815, intron 2 of 26)	CpG	1141.0	NM_013815	217578.0	Mm.479583	NM_013815	ENSMUSG00000035021	Baz1a	Acf1|B930060C03|BC065123|Gtl5|Wcrf180|cbp146	bromodomain adjacent to zinc finger domain 1A	protein-coding	4.45842374272011	4.94468593346827	4.37096970479514	3.86933037411678	4.74407600976996	5.09366402433169	4.40344136434891	4.21754737326511	0.245662705899991	0.542447612038746	0.954935047166076
Merged-chr14-74709241-2	chr14	74709141	74709341	+	568.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23056.0	NM_001285423	13885.0	Mm.38055	NM_016903	ENSMUSG00000021996	Esd	Es-10|Es10|FGH|sid478	esterase D/formylglutathione hydrolase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-65585595-4	chr6	65585493	65585693	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4805.0	NM_001001495	414084.0	Mm.117558	NM_001001495	ENSMUSG00000044162	Tnip3	9030611K07Rik|ABIN-3|LIND	TNFAIP3 interacting protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-108765052-4	chr12	108764975	108765175	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28236.0	NM_009537	22632.0	Mm.3868	NM_009537	ENSMUSG00000021264	Yy1	AW488674|NF-E1	YY1 transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-170510390-2	chr1	170510290	170510490	+	971.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001109985, intron 2 of 9)	intron (NM_001109985, intron 2 of 9)	46720.0	NM_027528	70729.0	Mm.409310	NM_027528	ENSMUSG00000038473	Nos1ap	6330408P19Rik|Capon	nitric oxide synthase 1 (neuronal) adaptor protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126761718-1	chr7	126761618	126761818	+	543.0	f1_c57bl6.idr	intron (NM_011952, intron 2 of 8)	intron (NM_011952, intron 2 of 8)	2092.0	NM_011952	26417.0	Mm.8385	NM_011952	ENSMUSG00000063065	Mapk3	Erk-1|Erk1|Ert2|Esrk1|Mnk1|Mtap2k|Prkm3|p44|p44erk1|p44mapk	mitogen-activated protein kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-85601987-2	chr3	85601883	85602083	+	675.666626	f0_balb.idr|f0_c57.idr	intron (NM_144896, intron 3 of 12)	intron (NM_144896, intron 3 of 12)	27854.0	NM_144896	229487.0	Mm.52275	NM_144896	ENSMUSG00000028085	Gatb	9430026F02Rik|Pet112|Pet112l	glutamyl-tRNA(Gln) amidotransferase, subunit B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-151542524-4	chr2	151542421	151542621	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302078)	promoter-TSS (NM_001302078)	38.0	NM_001302078	14225.0	Mm.278458	NM_008019	ENSMUSG00000032966	Fkbp1a	FKBP12|Fkbp|Fkbp1	FK506 binding protein 1a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-58142064-2	chr15	58141984	58142184	+	739.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029734, intron 1 of 5)	MIR|SINE|MIR	718.0	NM_001326599	76773.0	Mm.26771	NM_029734	ENSMUSG00000022359	Wdyhv1	2410187C16Rik|AU014961|AW550036|Ntaq1	WDYHV motif containing 1	protein-coding	0.626282780942799	2.91855961862339	0.685696634097315	1.50138987882394	0.63210444810067	1.02606246393424	1.57655156247325	1.35228415805856	-1.64133274123364	0.230654484282636	0.724701248888721
Merged-chr9-102852399-1	chr9	102852299	102852499	+	742.0	f0_balb.idr	intron (NM_001284258, intron 1 of 13)	Lx9|LINE|L1	17479.0	NM_001284258	20187.0	Mm.335391	NM_013649	ENSMUSG00000032547	Ryk	AW536699|ERK-3|Vik	receptor-like tyrosine kinase	protein-coding	0.69392902049583	0.749796984569977	0.732086798226729	0.718044919177233	1.55620873558429	1.5461153042803	2.07936187473224	1.65514408046789	5.18616639289474	0.000491828908914365	0.0109955836940768
Merged-chr12-116416740-3	chr12	116416657	116416857	+	761.0	f0_balb.idr|f0_c57.idr|f1_balb.idr	intron (NM_133762, intron 7 of 28)	MTD|LTR|ERVL-MaLR	11355.0	NM_133762	76044.0	Mm.491196	NM_133762	ENSMUSG00000042029	Ncapg2	5830426I05Rik|Luzp5|Mtb|mCAP-G2	non-SMC condensin II complex, subunit G2	protein-coding	2.87872312388136	3.23433687824381	3.43320776336462	2.62820109638807	2.62024875191386	3.70532045976575	1.56611880871783	2.64240547583426	-0.387750117270805	0.613736529058952	0.977250439470701
Merged-chr10-50699164-3	chr10	50699065	50699265	+	715.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198007, intron 14 of 41)	intron (NM_198007, intron 14 of 41)	106496.0	NM_198007	77987.0	Mm.222497	NM_198007	ENSMUSG00000038774	Ascc3	ASC1p200|B630009I04Rik|BC023451|D430001L07Rik|D630041L21|Helic1|RNAH	activating signal cointegrator 1 complex subunit 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-18412202-4	chr16	18412102	18412302	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007744, intron 1 of 4)	intron (NM_007744, intron 1 of 4)	1292.0	NM_001111063	12846.0	Mm.100940	NM_007744	ENSMUSG00000000326	Comt	Comt1|D16Wsu103e|D330014B15Rik	catechol-O-methyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-51076594-3	chr9	51076471	51076671	+	899.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033534, intron 1 of 7)	intron (NM_001033534, intron 1 of 7)	523.0	NM_001033534	244864.0	Mm.335152	NM_001033534	ENSMUSG00000060594	Layn	E030012M19Rik|Gm511	layilin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-99107058-4	chr10	99106972	99107172	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027740)	promoter-TSS (NM_027740)	-10.0	NM_027740	382406.0	Mm.440656	NM_027740	ENSMUSG00000019952	Poc1b	4933430F16Rik|Wdr51b	POC1 centriolar protein B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-80310844-4	chr4	80310747	80310947	+	981.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-523366.0	NM_031202	22178.0	Mm.30438	NM_031202	ENSMUSG00000005994	Tyrp1	Oca3|TRP-1|TRP1|Tyrp|b|brown|isa	tyrosinase-related protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115629286-2	chr11	115629186	115629386	+	785.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026071)	promoter-TSS (NM_026071)	-991.0	NM_001252395	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-121158560-3	chr7	121158465	121158665	+	731.333374	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139310, intron 27 of 28)	intron (NM_139310, intron 27 of 28)	75127.0	NM_139310	246190.0	Mm.221073	NM_139310	ENSMUSG00000034990	Otoa	-	otoancorin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88835140-3	chr3	88835053	88835253	+	865.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001242372)	promoter-TSS (NM_001242372)	-78.0	NM_027389	76022.0	Mm.126870	NM_027389	ENSMUSG00000054199	Gon4l	1500041I23Rik|2610100B20Rik|3632445O20Rik|5430404N14Rik|AA387005	gon-4-like (C.elegans)	protein-coding	2.97933088842622	3.07863289901513	3.75498952561997	2.60898403200965	0.969604758828913	1.12924146131449	1.08127978594614	1.03754006056274	-6.3969691204575	1.63447348569356e-07	1.34317896447612e-05
Merged-chr16-38721585-3	chr16	38721513	38721713	+	704.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8578.0	NM_020260	12549.0	Mm.370848	NM_020260	ENSMUSG00000022799	Arhgap31	5830477L08Rik|AU041750|Cdgap|D330026I07Rik	Rho GTPase activating protein 31	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36589225-3	chr1	36589142	36589342	+	722.43335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001126046, intron 10 of 14)	intron (NM_001126046, intron 10 of 14)	4090.0	NM_027957	381337.0	Mm.17413	NM_027957	ENSMUSG00000046337	Fam178b	1700024G10Rik|Gm990	family with sequence similarity 178, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27038927-2	chr17	27038827	27039027	+	780.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9668.0	NM_027544	70772.0	Mm.440437	NM_027544	ENSMUSG00000048731	Ggnbp1	0610031G08Rik|mdf	gametogenetin binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90567088-2	chr2	90566988	90567188	+	796.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	13559.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70212807-4	chr14	70212702	70212902	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5131.0	NM_011366	20410.0	Mm.5068	NM_011366	ENSMUSG00000022091	Sorbs3	SCAM-1|SH3P3|Sh3d4|vinexin-g	sorbin and SH3 domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-54764982-1	chr14	54764882	54765082	+	621.0	f0_balb.idr	intron (NM_016972, intron 1 of 10)	intron (NM_016972, intron 1 of 10)	16904.0	NM_016972	50934.0	Mm.276831	NM_016972	ENSMUSG00000022180	Slc7a8	AA408822|LAT2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	protein-coding	0.396805312446236	0.268288274493193	0.261085596841736	0.909299795340987	0.842385552635115	0.91467027576831	0.262677005485568	0.256481974766101	0.675307838833501	0.725746074439686	1
Merged-chr10-45058311-3	chr10	45058205	45058405	+	608.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13D3|LTR|ERVK	-8909.0	NM_011156	19072.0	Mm.10281	NM_011156	ENSMUSG00000019849	Prep	AI047692|AI450383|D10Wsu136e|PEP|Pop	prolyl endopeptidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-116309671-3	chr7	116309544	116309744	+	696.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1268.0	NM_001305185	233765.0	Mm.3741	NM_172743	ENSMUSG00000045659	Plekha7	A430081P20Rik|AI414265	pleckstrin homology domain containing, family A member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-48582163-2	chr6	48582061	48582261	+	675.0	f0_c57.idr|f1_balb.idr	Intergenic	Intergenic	-7284.0	NM_183309	330305.0	Mm.123868	NM_183309	ENSMUSG00000052730	Gm5111	A630038D02|EG330305	predicted gene 5111	protein-coding	2.11863274466368	1.66101555268981	0.702699876825478	0.687775563694351	1.05324356128388	0.725612024821025	0.706893064425114	1.92947963861057	-0.710527604121562	0.64110342350063	0.982599433509505
Merged-chr11-106254858-2	chr11	106254758	106254958	+	660.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025310, intron 3 of 20)	intron (NM_025310, intron 3 of 20)	1226.0	NM_025310	56095.0	Mm.29795	NM_025310	ENSMUSG00000020706	Ftsj3	AA537063|AU045295|C79843|D11Ertd400e|Epcs3	FtsJ RNA methyltransferase homolog 3 (E. coli)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-26398733-3	chr12	26398634	26398834	+	906.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080563, intron 1 of 8)	intron (NM_080563, intron 1 of 8)	16276.0	NR_105856	102466676.0		NR_105856	ENSMUSG00000098771	Mir6538	Gm27439|mmu-mir-6538	microRNA 6538	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-87658222-4	chr1	87658147	87658347	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110192, intron 2 of 26)	intron (NM_001110192, intron 2 of 26)	37935.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28750787-4	chr17	28750685	28750885	+	943.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER20|DNA|hAT-Charlie	-18532.0	NM_011950	26415.0	Mm.27970	NM_011950	ENSMUSG00000004864	Mapk13	SAPK4|Serk4	mitogen-activated protein kinase 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141868561-1	chr4	141868461	141868661	+	588.0	f1_c57bl6.idr	intron (NM_025994, intron 1 of 3)	intron (NM_025994, intron 1 of 3)	6359.0	NM_025994	27984.0	Mm.395598	NM_025994	ENSMUSG00000040659	Efhd2	2600015J22Rik|AA408606|D4Wsu27e	EF hand domain containing 2	protein-coding	1.79544185929784	1.16067932218382	2.05318340830091	1.5023475422661	1.90677342850345	1.90542053963539	2.0697412154393	1.50900754948845	0.561970601196541	0.598956046340772	0.972303230574462
Merged-chr17-5646173-2	chr17	5646073	5646273	+	690.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	-152484.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-68223433-4	chr17	68223385	68223585	+	826.895874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50312.0	NM_177278	320858.0	Mm.137356	NM_177278	ENSMUSG00000041565	L3mbtl4	A730037L19Rik|D930040M24Rik	L3MBTL4 histone methyl-lysine binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-120540035-4	chr2	120539935	120540135	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011743, intron 3 of 21)	intron (NM_011743, intron 3 of 21)	23824.0	NM_011743	20402.0	Mm.485295	NM_011743	ENSMUSG00000027288	Zfp106	Cd-1|D2Dcr28|EyeLinc12|H3a|Sh3bp3|Znf106|sirm|zfp-106	zinc finger protein 106	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46147713-2	chr8	46147613	46147813	+	777.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15938.0	NM_025747	66756.0	Mm.133623	NM_025747	ENSMUSG00000031631	Cfap97	1110068E21Rik|4933411K20Rik|AW049273|Kiaa1430	cilia and flagella associated protein 97	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75140650-2	chr11	75140550	75140750	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001002764, intron 14 of 18)	intron (NM_001002764, intron 14 of 18)	27502.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99252095-4	chr15	99251994	99252194	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016766)	promoter-TSS (NM_016766)	-133.0	NM_016766	51812.0	Mm.383472	NM_016766	ENSMUSG00000037570	Mcrs1	C78274|ICP22BP|MSP58|P78	microspherule protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-33162401-4	chr11	33162301	33162501	+	948.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008722, intron 1 of 10)	intron (NM_008722, intron 1 of 10)	805.0	NM_001252261	18148.0	Mm.485384	NM_008722	ENSMUSG00000057113	Npm1	B23|NO38|Npm	nucleophosmin 1	protein-coding	2.84925282166826	1.62458668676658	1.56583364270089	2.24363671844498	3.52650061461118	2.09216535625972	1.2880846602037	3.21826570055662	1.20244170669362	0.21393654648016	0.703749959240254
Merged-chr11-83039356-4	chr11	83039253	83039453	+	947.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355513, intron 1 of 5)	B2_Mm2|SINE|B2	689.0	NR_073523	237887.0	Mm.341645	NM_181542	ENSMUSG00000072621	Slfn10-ps	Slfn10|mFLJ00257	schlafen 10, pseudogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-51925776-4	chr11	51925674	51925874	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41857.0	NM_029976	52626.0	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91849083-4	chr16	91848994	91849194	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110275, intron 20 of 28)	intron (NM_001110275, intron 20 of 28)	82536.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-4197207-2	chr11	4197107	4197307	+	923.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_134023, intron 1 of 8)	intron (NM_134023, intron 1 of 8)	10374.0	NM_134023	103724.0	Mm.28140	NM_134023	ENSMUSG00000034412	Tbc1d10a	AI447804|EPI64|Tbc1d10|mFLJ00288	TBC1 domain family, member 10a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3706488-2	chr12	3706388	3706588	+	852.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162465, intron 9 of 17)	intron (NM_001162465, intron 9 of 17)	-100492.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-75371660-3	chr18	75371558	75371758	+	725.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042660, intron 2 of 3)	intron (NM_001042660, intron 2 of 3)	4293.0	NM_001042660	17131.0	Mm.34407	NM_008543	ENSMUSG00000025880	Smad7	Madh7	SMAD family member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-162549213-4	chr1	162549107	162549307	+	886.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144877)	promoter-TSS (NM_144877)	-862.0	NM_144877	71449.0	Mm.270569	NM_144877	ENSMUSG00000026694	Mettl13	5630401D24Rik	methyltransferase like 13	protein-coding	-0.121632798787086	-0.176534814104083	-0.358296340497135	-0.36099003933339	-0.115630009038706	0.110124672753567	-0.357523802442559	-0.360520434025959	0.909459863653788	0.702642005085671	1
Merged-chr7-73559796-2	chr7	73559696	73559896	+	801.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1401.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-126901324-4	chr10	126901216	126901416	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026858)	promoter-TSS (NM_026858)	55.0	NM_026858	68876.0	Mm.276769	NM_026858	ENSMUSG00000025436	Atp23	1110068E08Rik|2410012H02Rik|Xrcc6bp1	ATP23 metallopeptidase and ATP synthase assembly factor homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32608756-4	chr2	32608651	32608851	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289549, intron 2 of 6)	intron (NM_001289549, intron 2 of 6)	1766.0	NR_110347	50935.0	Mm.88831	NM_016973	ENSMUSG00000026811	St6galnac6	ST6GalNAcVI|Siat7f	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-107228030-3	chr1	107227940	107228140	+	718.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1VL4|LINE|L1	50331.0	NM_201363	381286.0	Mm.337362	NM_201363	ENSMUSG00000073601	Serpinb3c	1110001H02Rik|1110013A16Rik|Scca2|Serpinb4	serine (or cysteine) peptidase inhibitor, clade B, member 3C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-63206513-3	chr4	63206411	63206611	+	676.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-8901.0	NM_025685	373864.0	Mm.194116	NM_025685	ENSMUSG00000045672	Col27a1	5730512J02Rik|AI449266	collagen, type XXVII, alpha 1	protein-coding	2.64681564267089	1.9022359637926	2.43062035773041	1.62451418172598	2.33568784231852	1.25636527976763	2.13220302741898	1.43872611479372	-0.842169371549373	0.409981604219389	0.89375545339923
Merged-chr11-35178781-2	chr11	35178620	35178820	+	742.625	f0_c57.idr|f1_c57bl6.idr	intron (NM_011412, intron 3 of 35)	intron (NM_011412, intron 3 of 35)	57264.0	NM_011412	20564.0	Mm.478604	NM_011412	ENSMUSG00000056427	Slit3	Slil2|Slit1|b2b2362.1Clo	slit guidance ligand 3	protein-coding	3.11147131061318	3.60974442311606	3.08467717990687	2.62290339267208	1.79337522570879	2.82375884739586	2.15457941468086	1.39252546148407	-1.96531437677921	0.0150821676410037	0.145697139578714
Merged-chr17-70989187-2	chr17	70989087	70989287	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023402, intron 1 of 3)	intron (NM_023402, intron 1 of 3)	1329.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-142881103-4	chr3	142881004	142881204	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178654, intron 1 of 21)	intron (NM_178654, intron 1 of 21)	900.0	NM_178654	109333.0	Mm.244236	NM_178654	ENSMUSG00000004591	Pkn2	6030436C20Rik|AI507382|PRK2|Prkcl2|Stk7	protein kinase N2	protein-coding	2.15565777926598	1.71954876226632	1.87619879801578	2.89891020578492	2.6354220237157	2.13447683717982	2.67921014099223	2.59751912865333	0.586157052205055	0.490806169704206	0.934345795476137
Merged-chr2-144198887-2	chr2	144198787	144198987	+	982.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9597.0	NR_136884	433481.0	Mm.330630	NR_136884	ENSMUSG00000074758	Gm5535	EG433481	predicted gene 5535	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-23825093-4	chr14	23824980	23825180	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253364, intron 1 of 27)	intron (NM_001253364, intron 1 of 27)	179125.0	NM_001253375	16531.0	Mm.343607	NM_010610	ENSMUSG00000063142	Kcnma1	5730414M22Rik|BKCa|MaxiK|Slo|Slo1|mSlo|mSlo1	potassium large conductance calcium-activated channel, subfamily M, alpha member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55039123-4	chr14	55039029	55039229	+	770.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_073535, intron 1 of 1)	intron (NR_073535, intron 1 of 1)	667.0	NR_073535	100151693.0	Mm.378403	NR_073535	ENSMUSG00000072492	Gm10364	EG545052	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	3.79564105631813	2.85850299176822	3.42757409335248	3.75329690948566	1.93329950761196	3.12034713104857	1.87826607322667	2.91724618773921	-1.60006881154119	0.021772818395157	0.189663800899148
Merged-chr5-29948320-4	chr5	29948240	29948440	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64774.0	NM_001314054	16193.0	Mm.1019	NM_031168	ENSMUSG00000025746	Il6	Il-6	interleukin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129876730-2	chr4	129876630	129876830	+	952.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29496.0	NR_045190	319894.0	Mm.59196	NR_045190	ENSMUSG00000086369	E330017L17Rik	-	RIKEN cDNA E330017L17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83160438-1	chr6	83160338	83160538	+	741.0	f1_balb.idr	intron (NM_027948, intron 1 of 3)	B1F2|SINE|Alu	4034.0	NM_027948	71837.0	Mm.17621	NM_027948	ENSMUSG00000030030	1700003E16Rik	AU041756	RIKEN cDNA 1700003E16 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89242650-4	chr3	89242560	89242760	+	996.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_121683, intron 3 of 10)	intron (NR_121683, intron 3 of 10)	2353.0	NR_121683	360213.0	Mm.331156	NM_183037	ENSMUSG00000042766	Trim46	TRIFIC	tripartite motif-containing 46	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-65801170-3	chr3	65801068	65801268	+	780.366638	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166659, intron 9 of 12)	MTC|LTR|ERVL-MaLR	134940.0	NM_001166659	624866.0	Mm.296317	NM_001037923	ENSMUSG00000074579	Lekr1	EG546798|EG624866|Gm6534	leucine, glutamate and lysine rich 1	protein-coding	-0.481746432328506	-0.469214554318062	-0.473318280703541	-0.476485699865405	0.00981266690146199	-0.468289768798417	0.220978125795521	-0.475932277543194	3.5835758682466	0.180252994656414	1
Merged-chr1-85279821-1	chr1	85279721	85279921	+	719.666687	f1_balb.idr	Intergenic	Intergenic	-9255.0	NM_001037909	620078.0	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik	RIKEN cDNA C130026I21 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-74895635-2	chr15	74895535	74895735	+	594.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13931.0	NM_025929	67038.0	Mm.154566	NM_025929	ENSMUSG00000063522	2010109I03Rik	Ly6m	RIKEN cDNA 2010109I03 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-91460885-2	chr17	91460785	91460985	+	673.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-368083.0	NM_020252	18189.0	Mm.478418	NM_020252	ENSMUSG00000024109	Nrxn1	1700062G21Rik|9330127H16Rik|A230068P09Rik|mKIAA0578	neurexin I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-118850674-2	chr14	118850574	118850774	+	738.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001160097, intron 1 of 3)	intron (NM_001160097, intron 1 of 3)	-4276.0	NM_021386	58187.0	Mm.390755	NM_021386	ENSMUSG00000022132	Cldn10	6720456I16Rik|Cldn10a|Cldn10b|D14Ertd728e	claudin 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80838826-2	chr7	80838726	80838926	+	698.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23282.0	NM_009553	22691.0	Mm.358645	NM_009553	ENSMUSG00000038797	Zscan2	Zfp-29|Zfp29	zinc finger and SCAN domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-113639886-6	chr6	113639860	113640060	+	855.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 1 of 11)	B1_Mus1|SINE|Alu	1493.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-24202892-4	chr16	24202780	24202980	+	975.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-120190.0	NR_155457	108168278.0	Mm.417246	NR_155457		Gm46545	-	predicted gene, 46545	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-38296726-4	chr18	38296696	38296896	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164621)	promoter-TSS (NM_001164621)	-9.0	NM_001361268	56736.0	Mm.228903	NM_020012	ENSMUSG00000060450	Rnf14	2310075C09Rik|2610005D23Rik|AA986456|AU041447|D18Ertd188e|D7Bwg0165e|Triad2	ring finger protein 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-144249961-2	chr5	144249861	144250061	+	628.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163709, intron 1 of 2)	MLTR14|LTR|ERV1	-5264.0	NM_018772	55950.0	Mm.38011	NM_018772	ENSMUSG00000047843	Bri3	I3	brain protein I3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129624454-4	chr4	129624334	129624534	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025455)	promoter-TSS (NM_025455)	-526.0	NM_025455	66264.0	Mm.383215	NM_025455	ENSMUSG00000028795	Ccdc28b	1110002E08Rik|1810010N17Rik	coiled coil domain containing 28B	protein-coding	5.90663494585999	5.69462695743495	6.3905931220032	6.49478929017603	6.18920654426095	5.78779274523573	6.05370350710059	6.11176768791776	-0.124883322229138	0.611309101951299	0.975590131047044
Merged-chr2-80275282-3	chr2	80275155	80275355	+	650.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17215.0	NM_177256	320769.0	Mm.60992	NM_177256	ENSMUSG00000050114	Prdx6b	1-cysPrx-P1|4930414C22Rik|Aop2-rs1|Prdx5-rs1|Prdx6-ps1|Prdx6-rs1|Prdx6-rs1-ps	peroxiredoxin 6B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85944349-2	chr12	85944249	85944449	+	798.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347395, intron 28 of 32)	intron (NM_001347395, intron 28 of 32)	119399.0	NM_001081423	320244.0	Mm.132172	NM_177114	ENSMUSG00000012609	Ttll5	1700048H13Rik|2310009M18Rik|4930556H18Rik|AI428864|D630041K24Rik|R75373|Stamp|mKIAA0998	tubulin tyrosine ligase-like family, member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-62374201-2	chr14	62374099	62374299	+	672.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42131.0	NM_026001	67153.0	Mm.26040	NM_026001	ENSMUSG00000021932	Rnaseh2b	1110019N06Rik|2610207P08Rik|Dleu8	ribonuclease H2, subunit B	protein-coding	1.6876257381591	1.23198454553087	2.55583262424963	2.26754766040191	1.11064940536196	0.967119395934014	1.73662893810346	0.921566209021249	-2.4765035786178	0.0434434259048214	0.299041640675149
Merged-chr14-19889795-4	chr14	19889698	19889898	+	875.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038637, intron 4 of 4)	intron (NM_001038637, intron 4 of 4)	50873.0	NR_105025	52512.0	Mm.483998	NR_105025	ENSMUSG00000114350	D14Ertd670e	-	DNA segment, Chr 14, ERATO Doi 670, expressed	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-31898758-4	chr11	31898666	31898866	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290678, intron 2 of 7)	URR1A|DNA|hAT-Charlie	27826.0	NM_026252	67579.0	Mm.339792	NM_026252	ENSMUSG00000020300	Cpeb4	Cpe-bp4|Cpeb-4|mCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding	-0.371209252440364	-0.355126444827776	-0.360361366948729	-0.364422640311784	-0.370196101534659	-0.353950844213183	0.567679470802302	0.107986669072213	3.85287224097428	0.126391850998806	1
Merged-chr17-25274161-5	chr17	25274044	25274244	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027452)	promoter-TSS (NR_027452)	20.0	NR_027452	100272221.0	Mm.478766	NR_027452		Gm17801	-	predicted gene, 17801	ncRNA	3.76666170922426	2.44796801305054	3.27236558750303	4.22764413068369	4.58436433533546	3.52886626920063	4.2173624127452	4.29449978943483	0.862793842669973	0.110214536004785	0.520338668540955
Merged-chr8-11050020-1	chr8	11049920	11050120	+	747.0	f0_balb.idr	intron (NR_046017, intron 2 of 4)	intron (NR_046017, intron 2 of 4)	-41590.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-97389774-3	chr10	97389672	97389872	+	771.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33706.0	NR_039547	100628616.0		NR_039547	ENSMUSG00000105557	Mir3966	mmu-mir-3966|mu-mir-3966	microRNA 3966	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-32139042-4	chr5	32138926	32139126	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008037, intron 1 of 3)	intron (NM_008037, intron 1 of 3)	2554.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-62844031-4	chr14	62843968	62844168	+	922.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175546, intron 1 of 11)	intron (NM_175546, intron 1 of 11)	6347.0	NR_106174	102465889.0		NR_106174	ENSMUSG00000099245	Mir8098	Gm27462|mmu-mir-8098	microRNA 8098	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118161314-2	chr11	118161214	118161414	+	889.6999509999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32095.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-96001122-4	chr10	96001024	96001224	+	927.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001932, intron 9 of 28)	intron (NM_001001932, intron 9 of 28)	60461.0	NM_001001932	216238.0	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-74697857-1	chr2	74697757	74697957	+	572.0	f0_balb.idr	promoter-TSS (NM_013555)	promoter-TSS (NM_013555)	94.0	NM_013555	15438.0	Mm.26544	NM_013555	ENSMUSG00000043342	Hoxd9	Hox-4.4|Hox-5.2	homeobox D9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-63182943-2	chr1	63182843	63183043	+	865.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_146250, exon 3 of 3)	3' UTR (NM_146250, exon 3 of 3)	3920.0	NR_028558	100217464.0	Mm.484706	NR_028558	ENSMUSG00000064602	Snora41	MBI-83	small nucleolar RNA, H/ACA box 41	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124740470-4	chr6	124740377	124740577	+	993.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013535, intron 2 of 2)	intron (NM_013535, intron 2 of 2)	602.0	NM_013535	14790.0	Mm.439877	NM_013535	ENSMUSG00000072772	Grcc10	2310033H05Rik|C10	gene rich cluster, C10 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-41050900-4	chr4	41050799	41050999	+	676.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2763.0	NM_007473	11832.0	Mm.8728	NM_007473	ENSMUSG00000028427	Aqp7	AQP7L|AQPap	aquaporin 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-145289187-4	chr6	145289096	145289296	+	869.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38644.0	NR_045598	100039495.0	Mm.121014	NR_045598	ENSMUSG00000086013	Gm15706	-	predicted gene 15706	ncRNA	-0.971846193215455	-1.32125498911739	-1.1746473638158	-1.33937805479113	-1.35087743162387	-1.31909880171484	-1.32895245901187	-1.3379150641624	-2.21753722681566	0.513113539718258	1
Merged-chr11-17257145-2	chr11	17257045	17257245	+	643.333313	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001330649)	promoter-TSS (NM_001330649)	-402.0	NM_020558	57316.0	Mm.287982	NM_020558	ENSMUSG00000000581	C1d	1110036E10Rik|AI875855|SUN-CoR	C1D nuclear receptor co-repressor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-68248832-4	chr10	68248709	68248909	+	918.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023598, intron 2 of 9)	intron (NM_023598, intron 2 of 9)	29917.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-45045749-2	chr19	45045649	45045849	+	698.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001195265)	promoter-TSS (NM_001195265)	23.0	NM_001195265	100503041.0	Mm.329877	NM_177605	ENSMUSG00000074818	Pdzd7	9130207N01|EG435601|Pdzk7	PDZ domain containing 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-152469445-1	chr3	152469345	152469545	+	545.0	f1_balb.idr	intron (NM_001081277, intron 13 of 13)	intron (NM_001081277, intron 13 of 13)	72761.0	NM_001287139	108946.0	Mm.379292	NM_198416	ENSMUSG00000039068	Zzz3	3110065C23Rik|6430567E01Rik|AA408566|AI481057|AW556059|R75514	zinc finger, ZZ domain containing 3	protein-coding	0.0876725272331632	-0.0386965101090759	-0.0438959687285931	-0.047906774804521	0.513023096055007	-0.0375242814273477	0.633448060539513	0.118385412233515	3.13544846928004	0.14331201554399	1
Merged-chr6-125333661-4	chr6	125333575	125333775	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011324, intron 3 of 11)	intron (NM_011324, intron 3 of 11)	12335.0	NM_011324	20276.0	Mm.144114	NM_011324	ENSMUSG00000030340	Scnn1a	ENaC|SCNEA|Scnn1|mENaC	sodium channel, nonvoltage-gated 1 alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91421707-1	chr16	91421607	91421807	+	541.0	f1_balb.idr	intron (NM_008349, intron 5 of 6)	intron (NM_008349, intron 5 of 6)	15472.0	NM_008349	16155.0	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119040261-3	chr11	119040158	119040358	+	891.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013926, intron 2 of 4)	intron (NM_013926, intron 2 of 4)	655.0	NM_013926	30951.0	Mm.99953	NM_013926	ENSMUSG00000025578	Cbx8	Pc3	chromobox 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55758656-4	chr14	55758522	55758722	+	842.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009894)	promoter-TSS (NM_009894)	-198.0	NM_009894	12684.0	Mm.466766	NM_009894	ENSMUSG00000022219	Cideb	1110030C18Rik|AI790179|CIDE-B	cell death-inducing DNA fragmentation factor, alpha subunit-like effector B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-10253241-4	chr13	10253157	10253357	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033269, intron 1 of 4)	intron (NM_033269, intron 1 of 4)	107546.0	NM_033269	12671.0	Mm.342315	NM_033269	ENSMUSG00000046159	Chrm3	Chrm-3|M3|M3R	cholinergic receptor, muscarinic 3, cardiac	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5596690-4	chr17	5596610	5596810	+	814.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	104110.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-79704919-2	chr11	79704819	79705019	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7050.0	NR_029579	387188.0		NR_029579	ENSMUSG00000065395	Mir193a	Mir193|Mirn193|mir-193a|mmu-mir-193|mmu-mir-193a	microRNA 193a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-64652504-4	chr14	64652418	64652618	+	995.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081177)	promoter-TSS (NM_001081177)	-13.0	NM_001081177	16554.0	Mm.23611	NM_001081177	ENSMUSG00000060012	Kif13b	5330429L19Rik|6030414C01|AI429803|C130021D12Rik|GAKIN	kinesin family member 13B	protein-coding	3.61967895418177	3.39522386810727	3.01506352090836	2.71406050215342	3.27017376786345	2.77836596100344	2.54040781802238	2.8420613969109	-0.599676151021653	0.352854381551999	0.852849893203241
Merged-chr9-56635464-2	chr9	56635364	56635564	+	650.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001311076, exon 1 of 2)	5' UTR (NM_001311076, exon 1 of 2)	184.0	NM_001311076	235402.0	Mm.246605	NM_181074	ENSMUSG00000049556	Lingo1	4930471K13Rik|AV148400|LERN1|LINGO-1|Lrrn6a|UNQ201	leucine rich repeat and Ig domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83532481-2	chr11	83532381	83532581	+	852.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1963.0	NM_013653	20304.0	Mm.284248	NM_013653	ENSMUSG00000035042	Ccl5	MuRantes|RANTES|SISd|Scya5|TCP228	chemokine (C-C motif) ligand 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-74768391-1	chr16	74768291	74768491	+	593.0	f1_balb.idr	intron (NM_001358493, intron 1 of 28)	Lx6|LINE|L1	324379.0	NM_001358491	268902.0	Mm.171736	NM_175549	ENSMUSG00000052516	Robo2	2600013A04Rik|9430089E08Rik|BB097918|D230004I22Rik|mKIAA1568	roundabout guidance receptor 2	protein-coding	-0.136425429774471	-0.108678771703869	0.596894890117012	-0.124559795636831	-0.134638697475929	1.19445313556499	-0.115593748821119	-0.123330490836068	1.3856839631209	0.542887217465825	1
Merged-chr9-72925324-2	chr9	72925224	72925424	+	545.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028116)	promoter-TSS (NM_028116)	-326.0	NM_028116	72135.0	Mm.273605	NM_028116	ENSMUSG00000034910	Pygo1	2600014C22Rik	pygopus 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-44091724-4	chr14	44091610	44091810	+	987.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11B|LTR|ERVK	-10944.0	NM_007895	13587.0	Mm.327386	NM_007895	ENSMUSG00000072596	Ear2	EAR-13|EAR-2|ECP|ECP 2|Raf3|Rnase2	eosinophil-associated, ribonuclease A family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-42276785-4	chr10	42276688	42276888	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019740)	promoter-TSS (NM_019740)	-46.0	NM_019740	56484.0	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-74505431-6	chr11	74505300	74505500	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001015046, intron 2 of 24)	MER2|DNA|TcMar-Tigger	84758.0	NM_001015046	380711.0	Mm.425690	NM_001015046	ENSMUSG00000038807	Rap1gap2	AU067654|Garnl4|Gm1561|mKIAA1039	RAP1 GTPase activating protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19180930-4	chr7	19180821	19181021	+	970.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162996)	promoter-TSS (NM_001162996)	-249.0	NM_001162996	72205.0	Mm.154121	NM_028153	ENSMUSG00000040811	Eml2	1600029N02Rik|EMAP-2	echinoderm microtubule associated protein like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-161875907-4	chr1	161875798	161875998	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151684, intron 1 of 24)	intron (NR_151684, intron 1 of 24)	784.0	NM_172645	226551.0	Mm.170002	NM_172645	ENSMUSG00000040297	Suco	4732491B11|AI848100|AU016931|Opt	SUN domain containing ossification factor	protein-coding	4.51478729625357	4.4545477197283	4.0063966389096	4.30535641510521	4.5831236003803	4.3684255336699	3.88915083964084	3.98255634127292	-0.12547256853491	0.760889812535667	0.998431161219273
Merged-chr15-79546696-4	chr15	79546612	79546812	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199080)	promoter-TSS (NM_199080)	29.0	NM_001040187	67040.0	Mm.29644	NM_152806	ENSMUSG00000055065	Ddx17	2610007K22Rik|A430025E01Rik|AI047725|C80929|Gm926|p72	DEAD (Asp-Glu-Ala-Asp) box polypeptide 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-6439993-1	chr18	6439893	6440093	+	549.0	f1_balb.idr	intron (NM_007935, intron 12 of 13)	intron (NM_007935, intron 12 of 13)	50653.0	NR_035446	100316773.0		NR_035446	ENSMUSG00000084514	Mir1893	Mirn1893|mmu-mir-1893	microRNA 1893	ncRNA	0.75582507277376	0.812214008057135	0.794305386268128	1.69597393769827	1.93225007880242	1.84628637257347	0.798299308275971	1.70652854749933	1.88768864589708	0.199451575055374	0.682994044947012
Merged-chr11-107242019-3	chr11	107241967	107242167	+	809.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 6 of 9)	PB1D10|SINE|Alu	-52686.0	NM_001161329	68979.0	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-42938928-4	chr17	42938841	42939041	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62517.0	NM_009847	12488.0	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139379193-4	chr5	139379092	139379292	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033147, exon 1 of 1)	non-coding (NR_033147, exon 1 of 1)	-1447.0	NM_030258	80290.0	Mm.270003	NM_030258	ENSMUSG00000044197	Gpr146	BC003323|D830046C22Rik|PGR8	G protein-coupled receptor 146	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-119402916-2	chr6	119402816	119403016	+	600.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_197985, intron 1 of 7)	intron (NM_197985, intron 1 of 7)	-14182.0	NM_001355692	68465.0	Mm.291826	NM_197985	ENSMUSG00000030168	Adipor2	1110001I14Rik|ADCR2|AI115388|AW554121|D6Ucla1e|Paqr2	adiponectin receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-11336993-3	chr12	11336896	11337096	+	845.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012038, intron 2 of 3)	intron (NM_012038, intron 2 of 3)	37109.0	NR_106136	102465775.0		NR_106136	ENSMUSG00000098879	Mir7675	Gm27965|mmu-mir-7675	microRNA 7675	ncRNA	0.0468553357304198	0.0684162221951364	0.256455693484531	0.521418894896176	0.0482168630066602	0.0699883728124081	0.261772581777664	1.08035790767012	1.32871402090883	0.512691338331726	1
Merged-chr16-78197639-4	chr16	78197559	78197759	+	997.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57795.0	NR_045698	100503619.0	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-113131023-1	chr12	113130923	113131123	+	541.0	f1_c57bl6.idr	intron (NM_001346696, intron 13 of 19)	intron (NM_001346696, intron 13 of 19)	-9213.0	NM_024223	68337.0	Mm.133825	NM_024223	ENSMUSG00000006356	Crip2	0610010I23Rik|AW743261|C77570|CRP2|CRP4|Crp|ESP1|Hlp	cysteine rich protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-77418341-4	chr10	77418243	77418443	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027377)	promoter-TSS (NR_027377)	-33.0	NR_027377	100045653.0	Mm.363175	NR_027377		Gm17769	-	predicted gene, 17769	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-147013438-4	chr2	147013285	147013485	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356402, intron 1 of 28)	CpG	386.0	NM_001356402	24128.0	Mm.3065	NM_011917	ENSMUSG00000027433	Xrn2	-	5'-3' exoribonuclease 2	protein-coding	5.23713589633165	5.7972702022014	6.12312964438398	5.22090955491236	5.22202022922688	5.69756762563151	5.77059054962611	4.92875024756952	-0.229522456838435	0.464773193343133	0.922521920152562
Merged-chr5-130360117-1	chr5	130360017	130360217	+	551.0	f0_balb.idr	Intergenic	RLTR42-int|LTR|ERVK	-9341.0	NM_181045	140904.0	Mm.40875	NM_021371	ENSMUSG00000060371	Caln1	9630012C17Rik|Cabp8|MNCb-0849	calneuron 1	protein-coding	0.615122345863563	1.78650996433009	0.919610699455499	0.643685352401671	0.619475982093628	2.3474690469616	0.928110460140341	1.54167491806124	1.36904834075026	0.3468579938603	0.847437850938575
Merged-chr6-97417110-4	chr6	97417015	97417215	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 4 of 23)	intron (NM_145148, intron 4 of 23)	42171.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-63385797-2	chr10	63385697	63385897	+	773.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013888)	promoter-TSS (NM_013888)	-766.0	NM_013888	30045.0	Mm.32550	NM_013888	ENSMUSG00000036764	Dnajc12	Jdp1|mJDP1	DnaJ heat shock protein family (Hsp40) member C12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-90565383-2	chr16	90565283	90565483	+	598.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	161988.0	NM_025642	66578.0	Mm.180363	NM_025642	ENSMUSG00000022978	Mis18a	2610039C10Rik|2810018N07Rik	MIS18 kinetochore protein A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-64875988-3	chr12	64875893	64876093	+	714.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41918.0	NM_001025605	217648.0	Mm.341586	NM_001025605	ENSMUSG00000047227	Gm527	-	predicted gene 527	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165290215-2	chr2	165290115	165290315	+	683.333374	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_207706, exon 22 of 22)	3' UTR (NM_207706, exon 22 of 22)	-2377.0	NR_045544	228875.0	Mm.21184	NM_144893	ENSMUSG00000017664	Slc35c2	C85957|CGI-15|D2Wsu58e|Ovcov1	solute carrier family 35, member C2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-99974605-2	chr12	99974497	99974697	+	711.0	f0_balb.idr|f0_c57.idr	intron (NM_001164426, intron 2 of 2)	L1M4|LINE|L1	10098.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-42613293-2	chr17	42613193	42613393	+	671.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	AmnSINE1|SINE|Deu	-1980.0	NM_181753	353344.0	Mm.184937	NM_181753	ENSMUSG00000043972	Opn5	Gpr136|Neuropsin|PGR12|TMEM13	opsin 5	protein-coding	-0.593956300415485	-0.930807647363899	-0.939519624908152	-0.787561820041729	-0.690006692066006	-0.92834757593003	-0.938980557749679	-0.941071631716865	-0.85783308256565	0.772684027275881	1
Merged-chr8-98999349-3	chr8	98999241	98999441	+	837.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12546.0	NR_110579	100873092.0	Mm.414599	NR_110579	ENSMUSG00000089819	Gm15679	-	predicted gene 15679	ncRNA	-0.160918116435933	-0.140264356879929	0.799051622115097	-0.152169082724387	-0.159608751795511	-0.138765113715763	0.621179891384427	-0.151255491613036	-0.447527143026267	0.853018842371646	1
Merged-chr4-150542899-2	chr4	150542799	150542999	+	709.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 11 of 22)	intron (NM_001085492, intron 11 of 22)	109275.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-20830518-2	chr6	20830418	20830618	+	551.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F|LINE|L1	-385591.0	NM_019697	16508.0	Mm.425316	NM_019697	ENSMUSG00000060882	Kcnd2	AI839615|AW555701|Kv4.2|R75121|mKIAA1044	potassium voltage-gated channel, Shal-related family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-23979527-4	chr11	23979424	23979624	+	680.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-84254.0	NM_172555	216578.0	Mm.470599	NM_172555	ENSMUSG00000020273	Papolg	9630006B20Rik	poly(A) polymerase gamma	protein-coding	1.6027567310051	1.31862650870926	1.28589899902419	2.06521502882359	1.61540110784326	1.67041311468338	1.74729221505207	1.57044526772074	0.100298059030366	0.926458864098148	0.998431161219273
Merged-chr2-180921004-4	chr2	180920905	180921105	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173761)	promoter-TSS (NM_173761)	-69.0	NM_173761	228994.0	Mm.30205	NM_173761	ENSMUSG00000038848	Ythdf1	2210410K23Rik|8030473O16	YTH domain family 1	protein-coding	6.3387501774861	6.25635673268917	5.55174027967374	6.21479889026972	5.92274693267318	6.54082761738421	5.07681136397939	6.15729763969586	-0.11969395928628	0.683399808061002	0.995882295196263
Merged-chr13-112643118-2	chr13	112643018	112643218	+	675.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145885, intron 3 of 21)	intron (NM_001145885, intron 3 of 21)	9192.0	NM_010029	13206.0	Mm.12818	NM_010029	ENSMUSG00000021758	Ddx4	AV206478|Mvh|VASA	DEAD (Asp-Glu-Ala-Asp) box polypeptide 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-22167895-1	chr8	22167795	22167995	+	750.0	f1_c57bl6.idr	TTS (NM_001004140)	TTS (NM_001004140)	-1460.0	NM_011848	23954.0	Mm.41413	NM_011848	ENSMUSG00000031478	Nek3	-	NIMA (never in mitosis gene a)-related expressed kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-67225064-4	chr7	67224968	67225168	+	781.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001357962)	TTS (NM_001357962)	2452.0	NM_001191051	75099.0	Mm.121691	NM_175215	ENSMUSG00000043831	Lysmd4	4930506D23Rik	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89777035-2	chr3	89776935	89777135	+	702.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_027315, intron 3 of 12)	intron (NM_027315, intron 3 of 12)	3426.0	NM_027315	70093.0	Mm.41438	NM_027315	ENSMUSG00000042572	Ube2q1	1110002C01Rik|2310012M18Rik|AI854014|Gtap|NICE-5|PRO3094|Ube2q	ubiquitin-conjugating enzyme E2Q family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-151457309-4	chr1	151457209	151457409	+	990.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026876, intron 13 of 14)	intron (NM_026876, intron 13 of 14)	14916.0	NR_106150	102466847.0		NR_106150	ENSMUSG00000106406	Mir7682	mmu-mir-7682	microRNA 7682	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-139075471-4	chr3	139075350	139075550	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001040690)	promoter-TSS (NM_001040690)	-249.0	NM_001356388	229877.0	Mm.28893	NM_145544	ENSMUSG00000028149	Rap1gds1	BC011279|GDS1	RAP1, GTP-GDP dissociation stimulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-65107966-3	chr5	65107876	65108076	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347355, intron 1 of 10)	CpG	408.0	NM_001347355	71778.0	Mm.10281	NM_175174	ENSMUSG00000054920	Klhl5	1300013C10Rik	kelch-like 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-110357182-4	chr13	110357076	110357276	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177713)	promoter-TSS (NM_177713)	-4.0	NM_177713	238875.0	Mm.30533	NM_177713	ENSMUSG00000046006	Gapt	9830130M13Rik	Grb2-binding adaptor, transmembrane	protein-coding	3.57147190785383	2.49771103553243	4.52538403651822	4.26313391086473	4.61502287731669	3.88712028920887	5.33027055554792	3.93378054686837	0.862565613297876	0.111950273716173	0.523751271664787
Merged-chr7-128068041-4	chr7	128067932	128068132	+	998.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008401, intron 2 of 29)	intron (NM_008401, intron 2 of 29)	5392.0	NM_008401	16409.0	Mm.262106	NM_008401	ENSMUSG00000030786	Itgam	CD11b/CD18|CR3|CR3A|Cd11b|F730045J24Rik|Ly-40|MAC1|Mac-1|Mac-1a	integrin alpha M	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64342830-1	chr5	64342730	64342930	+	742.666687	f1_balb.idr	intron (NM_001289514, intron 17 of 18)	intron (NM_001289514, intron 17 of 18)	112473.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	1.02851100393778	1.16166320029665	0.735057203279284	1.64892751166654	1.47823355732868	1.69887708438211	0.738020600734954	0.726443261355306	0.193584605944459	0.895652987670004	0.998431161219273
Merged-chr16-38092836-2	chr16	38092736	38092936	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347232, intron 1 of 11)	intron (NM_001347232, intron 1 of 11)	-3576.0	NR_033221	414072.0	Mm.483602	NR_033221		BC031361	-	cDNA sequence BC031361	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-90014896-2	chr7	90014796	90014996	+	684.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14263.0	NR_110365	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-131892172-3	chr3	131892071	131892271	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2c|LINE|L2	-193121.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	3.74753832640418	4.39054628644238	4.42728396270048	4.31434064835518	2.35747742964299	1.72733799064374	3.03767978759004	2.80529616753512	-2.56783840909553	1.39528472214579e-05	0.000610971755339606
Merged-chr9-86592243-3	chr9	86592156	86592356	+	878.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008615, intron 12 of 13)	intron (NM_008615, intron 12 of 13)	20203.0	NM_027100	69519.0	Mm.272517	NM_027100	ENSMUSG00000032417	Rwdd2a	1700030C20Rik|AI848608|Rwdd2	RWD domain containing 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-58546273-4	chr4	58546193	58546393	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010336, intron 1 of 3)	intron (NM_010336, intron 1 of 3)	7000.0	NM_172989	14745.0	Mm.4772	NM_010336	ENSMUSG00000038668	Lpar1	AI326300|Edg2|Gpcr26|Kdt2|lpA1|vzg-1	lysophosphatidic acid receptor 1	protein-coding	3.88098004846835	4.59378582797335	4.93941485602685	5.08340508604242	3.84929876465768	4.62548814483975	4.93550845157622	5.10570655886546	0.0115677503851697	0.977942628932684	0.998431161219273
Merged-chr13-60707005-2	chr13	60706905	60707105	+	621.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 3 of 26)	intron (NM_134062, intron 3 of 26)	79359.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-114387297-2	chr13	114387197	114387397	+	558.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_010887, intron 1 of 4)	intron (NM_010887, intron 1 of 4)	797.0	NM_010887	17993.0	Mm.253142	NM_010887	ENSMUSG00000021764	Ndufs4	6720411N02Rik|C1-18k	NADH dehydrogenase (ubiquinone) Fe-S protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27027602-4	chr17	27027505	27027705	+	997.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149749, intron 1 of 6)	intron (NR_149749, intron 1 of 6)	1022.0	NM_007523	12018.0	Mm.2443	NM_007523	ENSMUSG00000057789	Bak1	Bak|N-BAK1|N-Bak	BCL2-antagonist/killer 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-39421005-4	chr10	39420905	39421105	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122892, intron 2 of 12)	intron (NM_001122892, intron 2 of 12)	51206.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124968076-2	chr6	124967976	124968176	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2538.0	NM_001164089	26894.0	Mm.244536	NM_012003	ENSMUSG00000030127	Cops7a	D6Ertd35e|SGN7a	COP9 signalosome subunit 7A	protein-coding	0.950423087566627	1.91233128244147	0.794906873428866	0.996417261925485	1.26059772960837	1.9294014340626	0.798693153921836	1.58285521915461	0.68354888319678	0.613685147290519	0.977250439470701
Merged-chr18-38631744-4	chr18	38631642	38631842	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30474.0	NM_011898	24066.0	Mm.42038	NM_011898	ENSMUSG00000024427	Spry4	A030006O18Rik|sprouty4	sprouty RTK signaling antagonist 4	protein-coding	4.62900592375581	4.57595261772006	5.05058647649073	4.5158646498328	4.86856174297193	4.81938958753727	5.31265062584543	4.83779644814403	0.323382142326608	0.34092265717936	0.841759509021393
Merged-chr16-30513278-2	chr16	30513177	30513377	+	762.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172614, exon 10 of 10)	3' UTR (NM_172614, exon 10 of 10)	37301.0	NM_172614	224090.0	Mm.241459	NM_172614	ENSMUSG00000022537	Tmem44	1700007N03Rik|9330161C17Rik|B230220N21	transmembrane protein 44	protein-coding	0.910538714473052	2.40024824588805	0.967005337091171	1.70663891118107	0.916011738173248	1.84878783818579	2.48965958631478	1.71664932286632	0.528518727106537	0.679481081551923	0.995323723386884
Merged-chr19-16138798-2	chr19	16138698	16138898	+	775.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_008139, intron 1 of 6)	intron (NM_008139, intron 1 of 6)	5967.0	NM_008139	14682.0	Mm.439701	NM_008139	ENSMUSG00000024639	Gnaq	1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI	guanine nucleotide binding protein, alpha q polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-37047260-3	chr9	37047161	37047361	+	590.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029838, intron 2 of 12)	intron (NM_001029838, intron 2 of 12)	100061.0	NM_148950	208076.0	Mm.260335	NM_148950	ENSMUSG00000035934	Pknox2	D230005H23Rik|Prep2	Pbx/knotted 1 homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-22070886-4	chr9	22070761	22070961	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040406)	promoter-TSS (NR_040406)	-141.0	NR_040406	100503652.0	Mm.439941	NR_040406	ENSMUSG00000096981	Gm16845	-	predicted gene, 16845	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-30043513-4	chr14	30043411	30043611	+	979.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083616, intron 45 of 46)	intron (NM_001083616, intron 45 of 46)	20878.0	NM_175343	218865.0	Mm.259916	NM_172264	ENSMUSG00000015970	Chdh	AU041472|D630034H06Rik	choline dehydrogenase	protein-coding	3.99871037262415	3.58607709262844	3.46546375358741	3.53618036943083	3.7767786401096	3.29288754952438	3.88605831939888	4.25954809502614	0.267301803640367	0.592504952790333	0.970274034155379
Merged-chr19-3375507-2	chr19	3375407	3375607	+	578.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013495, intron 13 of 18)	B1_Mur4|SINE|Alu	-13350.0	NM_001039658	17771.0	Mm.209941	NM_010841	ENSMUSG00000024905	Tesmin	Mtl5	testis expressed metallothionein like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-109204547-3	chr4	109204441	109204641	+	942.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2269.0	NM_001346502	100273.0	Mm.366315	NM_133885	ENSMUSG00000028559	Osbpl9	2600011I06Rik|AU015843|Orp-9	oxysterol binding protein-like 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-89570699-4	chr1	89570627	89570827	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037136, intron 1 of 16)	intron (NM_001037136, intron 1 of 16)	113165.0	NR_015540	74403.0	Mm.444291	NR_015540		4933400F21Rik	1700091C04Rik|4930565K10Rik	RIKEN cDNA 4933400F21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-30618114-2	chr6	30618014	30618214	+	714.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144537, intron 4 of 11)	intron (NM_144537, intron 4 of 11)	7104.0	NM_144537	74649.0	Mm.159276	NM_144537	ENSMUSG00000029788	Cpa5	4930430M09Rik	carboxypeptidase A5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-108258873-2	chr3	108258773	108258973	+	877.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011967, intron 1 of 8)	intron (NM_011967, intron 1 of 8)	1947.0	NM_011967	26442.0	Mm.208883	NM_011967	ENSMUSG00000068749	Psma5	ZETA	proteasome (prosome, macropain) subunit, alpha type 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-144604370-3	chr3	144604256	144604456	+	838.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT2C2|LTR|ERVL	33929.0	NM_053102	93684.0	Mm.29812	NM_053102	ENSMUSG00000037072	Selenof	9430015P09Rik|Sep15	selenoprotein F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-66189037-4	chr14	66188937	66189137	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 4 of 30)	intron (NM_001162366, intron 4 of 30)	24787.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80143526-4	chr7	80143427	80143627	+	957.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28177.0	NM_173011	269951.0	Mm.246432	NM_173011	ENSMUSG00000030541	Idh2	E430004F23|IDPm|Idh-2	isocitrate dehydrogenase 2 (NADP+), mitochondrial	protein-coding	2.38782110430912	3.37624989692886	1.72268782009251	3.23962896566322	1.98814555143216	3.53997011602364	1.73710429911744	2.9526399031755	-0.142429813095466	0.867393968939768	0.998431161219273
Merged-chr7-19632625-2	chr7	19632525	19632725	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_019649, exon 14 of 14)	3' UTR (NM_019649, exon 14 of 14)	-3187.0	NM_009046	19698.0	Mm.1741	NM_009046	ENSMUSG00000002983	Relb	shep	avian reticuloendotheliosis viral (v-rel) oncogene related B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126237438-1	chr7	126237338	126237538	+	611.0	f1_c57bl6.idr	intron (NR_131046, intron 2 of 4)	intron (NR_131046, intron 2 of 4)	166.0	NR_131047	76728.0	Mm.76920	NR_131046	ENSMUSG00000108676	1700123J17Rik	Gm44875	RIKEN cDNA 1700123J17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-24436711-4	chr18	24436594	24436794	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-7524.0	NR_029573	387182.0		NR_029573	ENSMUSG00000065532	Mir187	Mirn187|mir-187|mmu-mir-187	microRNA 187	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83550536-4	chr11	83550447	83550647	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MEa|LINE|L1	-20029.0	NM_013653	20304.0	Mm.284248	NM_013653	ENSMUSG00000035042	Ccl5	MuRantes|RANTES|SISd|Scya5|TCP228	chemokine (C-C motif) ligand 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56939367-3	chr17	56939265	56939465	+	863.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER20B|LTR|ERVK	-3977.0	NM_022328	64144.0	Mm.148748	NM_022328	ENSMUSG00000024212	Mllt1	AA407901|BAM11|ENL|LTG19	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-103627368-4	chr2	103627248	103627448	+	991.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178890, intron 1 of 16)	B3|SINE|B2	61038.0	NM_178890	99382.0	Mm.35850	NM_178890	ENSMUSG00000032724	Abtb2	AW539457|BPOZ-2	ankyrin repeat and BTB (POZ) domain containing 2	protein-coding	4.18577352463656	4.51519301949785	4.36482237058936	3.73969211899743	5.88700897313165	4.41949329269325	5.93194900492314	5.80715232990123	1.68108415719868	1.24332874916366e-05	0.000552498456757984
Merged-chr11-45649453-1	chr11	45649353	45649553	+	545.0	f0_balb.idr	Intergenic	Intergenic	-158630.0	NR_045876	100009664.0	Mm.415439	NR_045876		F630206G17Rik	-	RIKEN cDNA F630206G17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64201295-2	chr5	64201195	64201395	+	906.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019636, intron 2 of 19)	intron (NM_019636, intron 2 of 19)	-29062.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-87913645-2	chr3	87913545	87913745	+	679.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008231, intron 3 of 5)	intron (NM_008231, intron 3 of 5)	-5899.0	NM_026591	67707.0	Mm.393802	NM_026591	ENSMUSG00000019710	Mrpl24	2010005E08Rik|2810470K06Rik|6720473G22Rik|AA407670	mitochondrial ribosomal protein L24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-42355151-2	chr6	42355051	42355251	+	783.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289618, intron 4 of 9)	intron (NM_001289618, intron 4 of 9)	5323.0	NM_001289618	22793.0	Mm.282303	NM_011777	ENSMUSG00000029860	Zyx	9530098H06Rik|R75157	zyxin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166655920-3	chr2	166655821	166656021	+	868.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	L2a|LINE|L2	57911.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-38001701-2	chr7	38001603	38001803	+	825.916626	f0_balb.idr|f1_balb.idr	intron (NM_011274, intron 1 of 10)	intron (NM_011274, intron 1 of 10)	17849.0	NM_011274	19777.0	Mm.387220	NM_011274	ENSMUSG00000030421	Uri1	C80913|NNX3|Rmp	URI1, prefoldin-like chaperone	protein-coding	2.47910296480004	1.44548298496835	1.68528131519156	1.63205463439049	3.47654472018738	3.46623997168753	3.12380089338351	3.3135504088742	2.88650477730204	0.000326345714921063	0.00782935389534858
Merged-chr17-35788230-2	chr17	35788130	35788330	+	907.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15780.0	NR_045459	74601.0	Mm.410840	NR_045459	ENSMUSG00000092171	4833427F10Rik	-	RIKEN cDNA 4833427F10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85398644-2	chr12	85398544	85398744	+	589.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER113A|DNA|hAT-Charlie	-23927.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-81132899-4	chr13	81132788	81132988	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 87 of 89)	intron (NM_054053, intron 87 of 89)	168814.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-14100760-2	chr1	14100660	14100860	+	789.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	209439.0	NM_001310459	14048.0	Mm.250185	NM_010164	ENSMUSG00000025932	Eya1	bor	EYA transcriptional coactivator and phosphatase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-91053929-4	chr1	91053821	91054021	+	996.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008515, intron 1 of 22)	intron (NM_008515, intron 1 of 22)	477.0	NM_001310732	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-116457911-4	chr7	116457831	116458031	+	999.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14473.0	NM_011083	18704.0	Mm.3810	NM_011083	ENSMUSG00000030660	Pik3c2a	Cpk-m|PI3KC2	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-31034888-4	chr7	31034786	31034986	+	916.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001287217, intron 8 of 8)	intron (NM_001287217, intron 8 of 8)	5431.0	NR_106017	102465635.0		NR_106017	ENSMUSG00000098783	Mir7050	Gm27578|mmu-mir-7050	microRNA 7050	ncRNA	3.0269429652567	2.78032320661593	2.68214298665659	1.37241335004131	1.77831963480756	2.54353186694891	3.70236886169856	2.37294897759505	0.386783738860733	0.661772130094031	0.991056031673253
Merged-chr2-116077974-2	chr2	116077874	116078074	+	614.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153841, intron 2 of 4)	intron (NR_153841, intron 2 of 4)	-1878.0	NR_033447	69974.0	Mm.440293	NR_033447		2810405F15Rik	-	RIKEN cDNA 2810405F15 gene	ncRNA	-1.31349849087795	-1.28274354783242	-1.29349452597086	-1.3023256995151	-1.3130151546297	-1.28041376602105	-0.694015972326031	-1.30074492367298	2.57396649482007	0.456321314346772	1
Merged-chr15-58878168-2	chr15	58878068	58878268	+	548.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	5519.0	NM_026642	68260.0	Mm.278805	NM_026642	ENSMUSG00000037085	Trmt12	4632406N01Rik|AI449275|Tyw2	tRNA methyltranferase 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-74425823-3	chr9	74425732	74425932	+	881.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	315498.0	NM_001033500	546144.0	Mm.335289	NM_177908	ENSMUSG00000044976	Wdr72	AW558070|D230040E23	WD repeat domain 72	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-100820911-4	chr5	100820818	100821018	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172405)	promoter-TSS (NM_172405)	17.0	NM_172405	70681.0	Mm.486560	NM_172405	ENSMUSG00000035234	Abraxas1	3830405G04Rik|5630400M01Rik|AI506069|AL024423|AV118690|Ccdc98|Fam175a	BRCA1 A complex subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-24598753-4	chr5	24598644	24598844	+	882.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_025891, exon 2 of 13)	exon (NM_025891, exon 2 of 13)	3258.0	NM_025891	66993.0	Mm.436539	NM_025891	ENSMUSG00000028949	Smarcd3	1500001J14Rik|2210409C08Rik|BAF60C	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-89638166-3	chr6	89638050	89638250	+	808.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5838.0	NM_001178060	232223.0	Mm.229332	NM_153162	ENSMUSG00000000811	Txnrd3	AI196535|TGR|TR2	thioredoxin reductase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-43503790-2	chr1	43503690	43503890	+	823.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_010879, intron 1 of 4)	intron (NM_010879, intron 1 of 4)	58039.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36683257-1	chr18	36683157	36683357	+	578.0	f1_balb.idr	3' UTR (NM_001083317, exon 4 of 4)	3' UTR (NM_001083317, exon 4 of 4)	-3891.0	NM_146085	225372.0	Mm.89673	NM_146085	ENSMUSG00000006050	Apbb3	Fe65l2|Rirl2|TR2S	amyloid beta (A4) precursor protein-binding, family B, member 3	protein-coding	-1.02399571608706	-1.00526265269726	-1.01704094937231	-1.020509632451	-0.749011178236936	-0.508513708853148	-1.01437460117799	-1.02014231438484	2.8633379022308	0.356921943934824	1
Merged-chr15-94592258-7	chr15	94592178	94592378	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2454.0	NM_008971	19230.0	Mm.490250	NM_008971	ENSMUSG00000022451	Twf1	A6|Ptk9|twinfilin	twinfilin actin binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47768866-4	chr17	47768767	47768967	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161723, intron 1 of 8)	intron (NM_001161723, intron 1 of 8)	-16877.0	NM_011549	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	3.33324196014151	2.81470750508214	3.2425889094658	4.43470316081692	3.96824563290657	3.38587970333659	4.05925245226614	4.1040276395961	0.421834727882183	0.447158769140052	0.914498173479176
Merged-chr7-19268113-2	chr7	19268013	19268213	+	682.025024	f1_balb.idr|f1_c57bl6.idr	intron (NM_009499, intron 1 of 12)	PB1D9|SINE|Alu	3741.0	NM_001282021	22323.0	Mm.9684	NM_009499	ENSMUSG00000030403	Vasp	-	vasodilator-stimulated phosphoprotein	protein-coding	-0.135163881901598	-0.115517964847298	0.884104435921057	-0.12685869803681	0.0314941914059588	-0.114086543863284	0.391924854551082	-0.125990006805072	-1.0466495468065	0.643229430211474	1
Merged-chr17-71667500-2	chr17	71667400	71667600	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5761.0	NM_177087	320159.0	Mm.187372	NM_177087	ENSMUSG00000045761	Togaram2	4632412N22Rik|Fam179a	TOG array regulator of axonemal microtubules 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120699411-2	chr11	120699311	120699511	+	612.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026877, intron 7 of 15)	intron (NM_026877, intron 7 of 15)	14356.0	NM_016665	20892.0	Mm.259716	NM_016665	ENSMUSG00000025144	Cenpx	Stra13	centromere protein X	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-124045503-7	chr1	124045459	124045659	+	797.221436	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199021)	promoter-TSS (NM_199021)	0.0	NM_199021	269109.0	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-32182032-4	chr19	32181926	32182126	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 5 of 9)	intron (NM_144792, intron 5 of 9)	28987.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-128963411-2	chr4	128963311	128963511	+	750.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172875)	promoter-TSS (NM_172875)	-956.0	NM_001301841	242669.0	Mm.215814	NM_172875	ENSMUSG00000028789	Azin2	4933429I20Rik|Adc|Azi2|B930082O19|ODC-p|Odcp	antizyme inhibitor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-79502412-2	chr14	79502312	79502512	+	749.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007920, intron 1 of 8)	Lx9|LINE|L1	-13262.0	NM_001286412	13709.0	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-128089346-4	chr7	128089238	128089438	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008401, intron 12 of 29)	L1M2|LINE|L1	26698.0	NM_008401	16409.0	Mm.262106	NM_008401	ENSMUSG00000030786	Itgam	CD11b/CD18|CR3|CR3A|Cd11b|F730045J24Rik|Ly-40|MAC1|Mac-1|Mac-1a	integrin alpha M	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-64447755-4	chr9	64447657	64447857	+	813.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001134399, intron 1 of 24)	intron (NM_001134399, intron 1 of 24)	62131.0	NM_001134399	214058.0	Mm.127721	NM_172522	ENSMUSG00000036466	Megf11	2410080H04Rik|D130061K05	multiple EGF-like-domains 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128363409-1	chr2	128363309	128363509	+	644.333313	f0_balb.idr	intron (NR_028590, intron 1 of 2)	intron (NR_028590, intron 1 of 2)	65942.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	-0.0646083247712576	-0.0371532115391436	-0.0459709807733317	0.719783909408571	-0.0628457052695676	-0.0351878763577219	-0.0440119961018758	1.23084307177351	1.16040551360658	0.607165394257301	1
Merged-chr1-184622708-4	chr1	184622605	184622805	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65014.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-99967776-2	chr12	99967676	99967876	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164426, intron 2 of 2)	intron (NM_001164426, intron 2 of 2)	3277.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-39011466-4	chr2	39011355	39011555	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028809, intron 1 of 3)	intron (NM_028809, intron 1 of 3)	3316.0	NM_028809	74192.0	Mm.38155	NM_028809	ENSMUSG00000026755	Arpc5l	2010015J01Rik|AI852867|ARC16-2|AW555592|AW742746	actin related protein 2/3 complex, subunit 5-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3504099-2	chr4	3504034	3504234	+	661.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-32956.0	NR_037306	100499523.0		NR_037306	ENSMUSG00000094253	Mir3471-2	mmu-mir-3471-2	microRNA 3471-2	ncRNA	0.550419408732925	1.34454258954741	1.60869259152442	0.569381919780467	0.906022506267052	0.597757762309022	0.583648680228592	1.7249302969192	-0.198287276975826	0.903666663803373	0.998431161219273
Merged-chr17-34114996-2	chr17	34114896	34115096	+	889.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_037970, exon 7 of 13)	non-coding (NR_037970, exon 7 of 13)	4904.0	NR_037970	14312.0	Mm.3444	NM_010238	ENSMUSG00000024335	Brd2	AW228947|D17H6S113E|Frg-1|Fsrg-1|Fsrg1|Nat|Ring3|Rnf3|mKIAA4005	bromodomain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-87500312-4	chr3	87500215	87500415	+	939.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001113238, exon 12 of 12)	3' UTR (NM_001113238, exon 12 of 12)	-25263.0	NM_001083318	27049.0	Mm.219460	NM_012051	ENSMUSG00000003382	Etv3	AI414410|METS|Pe1	ets variant 3	protein-coding	2.71025141062212	2.14997159180894	2.26897703952458	2.63943478755649	3.54820651661612	3.51825442093212	3.7203114967858	2.37813424803959	1.62853000156369	0.0192245905896715	0.175161379509736
Merged-chr4-40239072-4	chr4	40238866	40239066	+	761.645813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172689, intron 1 of 17)	intron (NM_172689, intron 1 of 17)	859.0	NM_172689	230073.0	Mm.86382	NM_172689	ENSMUSG00000040296	Ddx58	6430573D20Rik|C330021E21|RIG-I|RLR-1	DEAD (Asp-Glu-Ala-Asp) box polypeptide 58	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141140533-2	chr4	141140500	141140700	+	789.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001025608)	promoter-TSS (NM_001025608)	-804.0	NR_102343	213491.0	Mm.332006	NM_174996	ENSMUSG00000040842	Szrd1	1110022I03|D4Ertd22e	SUZ RNA binding domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-166171953-3	chr1	166171889	166172089	+	814.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41768.0	NM_001360925	59290.0	Mm.46357	NM_021610	ENSMUSG00000000544	Gpa33	2010310L10Rik|2210401D16Rik|BB116197|mA33	glycoprotein A33 (transmembrane)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27328369-3	chr2	27328273	27328473	+	725.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_133905, intron 2 of 29)	intron (NR_133905, intron 2 of 29)	-81070.0	NM_138665	192166.0	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-24711134-3	chr16	24711026	24711226	+	808.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 7 of 12)	RMER6C|LTR|ERVK	-10729.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-32824717-1	chr12	32824617	32824817	+	628.0	f1_balb.idr	non-coding (NR_045032, exon 1 of 1)	non-coding (NR_045032, exon 1 of 1)	601.0	NR_045032	100504486.0	Mm.440246	NR_045032		Gdap10	Gdap-ps	ganglioside-induced differentiation-associated-protein 10	ncRNA	2.37899070338988	2.04064997364521	2.21717396717253	1.76944346260706	2.71534312932891	2.05627400715425	1.2029851754256	1.17791563246447	-0.332399421092092	0.758773309932691	0.998431161219273
Merged-chr3-21129057-4	chr3	21128948	21129148	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-761871.0	NM_175086	11608.0	Mm.134863	NM_175086	ENSMUSG00000054988	Agtr1b	AT1B|AT2R1B|Agtr-1b|Angtr-1b	angiotensin II receptor, type 1b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81231152-2	chr10	81231052	81231252	+	843.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178662)	promoter-TSS (NM_178662)	-373.0	NM_178662	16467.0	Mm.127681	NM_178662	ENSMUSG00000034958	Atcay	3322401A10Rik|BB077577|BNIP-H|CLAC|hes|ji	ataxia, cerebellar, Cayman type	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-108065330-4	chr6	108065223	108065423	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178391, intron 1 of 1)	intron (NM_178391, intron 1 of 1)	278.0	NM_178391	74729.0	Mm.56539	NM_178391	ENSMUSG00000034639	Setmar	5830404F24Rik|Etet2	SET domain without mariner transposase fusion	protein-coding	7.78784038874616	8.00109073928209	7.61727627543138	7.62773865583251	7.87118407056124	7.73615565471875	8.37796958547153	7.63440556128145	0.174758569849596	0.299065018236522	0.800409222377854
Merged-chr6-29276038-1	chr6	29275938	29276138	+	545.0	f1_balb.idr	TTS (NM_023516)	TTS (NM_023516)	3412.0	NM_023516	69573.0	Mm.45161	NM_023516	ENSMUSG00000043421	Hilpda	2310016C08Rik|AW049004|Hig2	hypoxia inducible lipid droplet associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-43608490-2	chr7	43608390	43608590	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355131, intron 1 of 3)	intron (NM_001355131, intron 1 of 3)	1321.0	NM_028913	74400.0	Mm.159188	NM_028913	ENSMUSG00000055102	Zfp819	4930427I11Rik|4933405K07Rik	zinc finger protein 819	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-117427530-2	chr12	117427410	117427610	+	791.5	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-88969.0	NM_175930	217944.0	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding	2.22896523727245	2.62762146959472	2.27972388899162	2.57514365096577	2.93547601163161	1.79829916225464	3.23811510091856	2.22736125084082	0.510027462473462	0.528267405454283	0.949209944897898
Merged-chr19-46147417-2	chr19	46147317	46147517	+	811.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008852, intron 1 of 3)	CpG	908.0	NM_008852	18742.0	Mm.6255	NM_008852	ENSMUSG00000025229	Pitx3	Ptx3|ak	paired-like homeodomain transcription factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-5557412-2	chr18	5557312	5557512	+	603.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_033552, intron 3 of 6)	L1_Mur3|LINE|L1	-34448.0	NM_011546	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-119876809-4	chr8	119876711	119876911	+	956.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_146219, exon 5 of 5)	exon (NM_146219, exon 5 of 5)	14506.0	NM_146219	234796.0	Mm.86446	NM_146219	ENSMUSG00000031828	Klhl36	-	kelch-like 36	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-98262247-2	chr13	98262147	98262347	+	946.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271390)	promoter-TSS (NM_001271390)	745.0	NM_178918	105372.0	Mm.28221	NM_178918	ENSMUSG00000041747	Utp15	AW544865	UTP15 small subunit processome component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-21339498-4	chr16	21339396	21339596	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6140.0	NR_131983	76222.0	Mm.86031	NR_131983		Magef1	6430590I03Rik	melanoma antigen family F, 1	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-12469798-3	chr16	12469694	12469894	+	835.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-341596.0	NR_040507	75493.0	Mm.396146	NR_040507	ENSMUSG00000101565	1700003L19Rik	-	RIKEN cDNA 1700003L19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52980324-4	chr13	52980218	52980418	+	899.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017373, intron 1 of 1)	CpG	721.0	NM_017373	18030.0	Mm.136604	NM_017373	ENSMUSG00000056749	Nfil3	AV225605|E4BP4	nuclear factor, interleukin 3, regulated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-121358564-2	chr3	121358464	121358664	+	690.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_155539, intron 2 of 2)	intron (NR_155539, intron 2 of 2)	66824.0	NM_024178	66789.0	Mm.269881	NM_024178	ENSMUSG00000039887	Alg14	5430428G01Rik|AI854024	asparagine-linked glycosylation 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-33682063-1	chr6	33681963	33682163	+	551.0	f0_balb.idr	intron (NM_009148, intron 10 of 17)	intron (NM_009148, intron 10 of 17)	-347385.0	NM_028886	74354.0	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-110963606-2	chr7	110963506	110963706	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_194464, intron 1 of 20)	intron (NM_194464, intron 1 of 20)	-17419.0	NM_010826	17540.0	Mm.250023	NM_010826	ENSMUSG00000005611	Mrvi1	BB115629|Irag|Ris1	MRV integration site 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-112002759-4	chr10	112002666	112002866	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5502.0	NM_028608	73690.0	Mm.173790	NM_028608	ENSMUSG00000056888	Glipr1	2410114O14Rik|RTVP-1|RTVP1|mRTVP-1	GLI pathogenesis-related 1 (glioma)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99468656-8	chr7	99468502	99468702	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_028145, exon 2 of 7)	exon (NM_028145, exon 2 of 7)	2598.0	NM_028145	72184.0	Mm.153585	NM_028145	ENSMUSG00000035298	Klhl35	2810406K13Rik	kelch-like 35	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85110819-4	chr12	85110683	85110883	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030225)	promoter-TSS (NM_030225)	-50.0	NM_030225	78920.0	Mm.296221	NM_030225	ENSMUSG00000004789	Dlst	1600017E01Rik|4632413C10Rik|4930529O08Rik|DLTS	dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120492752-4	chr11	120492667	120492867	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013770, intron 1 of 10)	intron (NM_013770, intron 1 of 10)	930.0	NM_013770	27376.0	Mm.3991	NM_013770	ENSMUSG00000025792	Slc25a10	Dic	solute carrier family 25 (mitochondrial carrier, dicarboxylate transporter), member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-32190371-4	chr16	32190289	32190489	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	10589.0	NM_001033539	328660.0	Mm.441006	NM_001033539	ENSMUSG00000075269	Bex6	B020003O03Rik	brain expressed family member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-90491855-2	chr11	90491755	90491955	+	713.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011505, intron 17 of 17)	intron (NM_011505, intron 17 of 17)	-100938.0	NM_172563	217082.0	Mm.158903	NM_172563	ENSMUSG00000003949	Hlf	E230015K02Rik	hepatic leukemia factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119249172-4	chr11	119249081	119249281	+	948.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175430, intron 11 of 18)	intron (NM_175430, intron 11 of 18)	-18782.0	NM_001159324	14387.0	Mm.4793	NM_008064	ENSMUSG00000025579	Gaa	E430018M07Rik	glucosidase, alpha, acid	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-24174188-3	chr19	24174118	24174318	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001198985)	promoter-TSS (NM_001198985)	-29.0	NM_001198985	21873.0	Mm.104744	NM_011597	ENSMUSG00000024812	Tjp2	ZO-2	tight junction protein 2	protein-coding	1.46259050395041	1.03345651437314	0.677839606589579	1.17065831418044	0.626898747818343	0.490383542112105	0.480407617182515	0.471801364144676	-3.82552848636664	0.0239854932458443	1
Merged-chr7-25127401-1	chr7	25127301	25127501	+	563.0	f1_balb.idr	intron (NM_001163556, intron 1 of 13)	intron (NM_001163556, intron 1 of 13)	5059.0	NM_011138	18987.0	Mm.76683	NM_011138	ENSMUSG00000008496	Pou2f2	Oct-2|Oct2a|Oct2b|Oct2c|Oct2d|Otf-2|Otf2	POU domain, class 2, transcription factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141872992-4	chr4	141872810	141873010	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025994, intron 1 of 3)	intron (NM_025994, intron 1 of 3)	2010.0	NM_025994	27984.0	Mm.395598	NM_025994	ENSMUSG00000040659	Efhd2	2600015J22Rik|AA408606|D4Wsu27e	EF hand domain containing 2	protein-coding	2.48097312455042	2.28031264700393	1.92083898375785	1.86785849228103	1.78928389023449	2.72463331747741	2.54280997621133	1.27300560826982	0.121342772411833	0.900051765277872	0.998431161219273
Merged-chr3-127300052-3	chr3	127299962	127300162	+	761.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001327938, intron 1 of 47)	intron (NM_001327938, intron 1 of 47)	108996.0	NM_001327939	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	2.70131737149321	2.28171581614877	1.65573159771862	3.27369213894703	2.38977860219745	2.29869555973574	2.35954646424609	1.82721717741348	-0.829327237480062	0.335291280776446	0.83593283300053
Merged-chr13-9099866-3	chr13	9099766	9099966	+	720.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172585, intron 1 of 17)	intron (NM_172585, intron 1 of 17)	5985.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28467617-3	chr7	28467538	28467738	+	698.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001141921)	TTS (NM_001141921)	15400.0	NM_001141921	80749.0	Mm.483073	NM_030562	ENSMUSG00000030600	Lrfn1	BC004018|SALM2|Semo1	leucine rich repeat and fibronectin type III domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-7088100-2	chr1	7088000	7088200	+	915.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183028)	promoter-TSS (NM_183028)	-820.0	NM_183028	319263.0	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-99171980-2	chr11	99171847	99172047	+	807.916626	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-16870.0	NM_007719	12775.0	Mm.2932	NM_007719	ENSMUSG00000037944	Ccr7	CC-CKR-7|CCR-7|CD197|Cdw197|Cmkbr7|EBI1|Ebi1h	chemokine (C-C motif) receptor 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171276540-3	chr1	171276437	171276637	+	961.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008911)	TTS (NM_008911)	4649.0	NM_008911	19044.0	Mm.266888	NM_008911	ENSMUSG00000062729	Ppox	Ppo	protoporphyrinogen oxidase	protein-coding	1.01425019051426	1.01636753556695	0.627291797933816	0.619444734630037	0.90489006423979	0.850730455855427	1.24760309456267	1.48110880251101	1.55217504239056	0.296893170320998	0.800117757751872
Merged-chr19-4511243-2	chr19	4511143	4511343	+	810.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162946, intron 1 of 20)	intron (NM_001162946, intron 1 of 20)	771.0	NM_001162946	18563.0	Mm.1845	NM_008797	ENSMUSG00000024892	Pcx	Pc|Pcb	pyruvate carboxylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-51483996-4	chr3	51483897	51484097	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016858)	promoter-TSS (NM_016858)	31.0	NM_016858	19338.0	Mm.1664	NM_016858	ENSMUSG00000027739	Rab33b	-	RAB33B, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167348688-6	chr2	167348541	167348741	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019835, intron 1 of 8)	intron (NM_019835, intron 1 of 8)	537.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-163658485-4	chr2	163658406	163658606	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164053)	promoter-TSS (NM_001164053)	48.0	NM_001164053	18769.0	Mm.10091	NM_011106	ENSMUSG00000035268	Pkig	PKIgamma	protein kinase inhibitor, gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-170325425-4	chr2	170325329	170325529	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30932.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90451794-2	chr2	90451694	90451894	+	724.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 14 of 23)	intron (NM_008982, intron 14 of 23)	27380.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-77424576-2	chr11	77424476	77424676	+	663.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177710, intron 8 of 14)	intron (NM_177710, intron 8 of 14)	-39337.0	NM_139129	216961.0	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-120275633-4	chr14	120275534	120275734	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207515)	promoter-TSS (NM_207515)	-35.0	NM_207515	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117109345-1	chr11	117109245	117109445	+	614.0	f0_balb.idr	Intergenic	Intergenic	-5827.0	NR_029459	74136.0	Mm.272312	NM_028777	ENSMUSG00000020823	Sec14l1	1200017E04Rik|2810012L19Rik|Naa-35	SEC14-like lipid binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-53823945-4	chr1	53823854	53824054	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001883, intron 28 of 28)	intron (NM_001001883, intron 28 of 28)	-25470.0	NR_106149	102465783.0		NR_106149	ENSMUSG00000098443	Mir7681	Gm27806|mmu-mir-7681	microRNA 7681	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-72104237-4	chr1	72104143	72104343	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-99048.0	NR_040454	71134.0	Mm.370574	NR_040454	ENSMUSG00000101848	4933417E11Rik	-	RIKEN cDNA 4933417E11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46852670-6	chr8	46852567	46852767	+	958.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	112922.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-50698283-3	chr15	50698189	50698389	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310481, intron 4 of 5)	intron (NM_001310481, intron 4 of 5)	190760.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-40459120-1	chr18	40459020	40459220	+	701.0	f0_c57.idr	intron (NM_026135, intron 1 of 1)	intron (NM_026135, intron 1 of 1)	200759.0	NM_026135	383348.0	Mm.76366	NM_026135	ENSMUSG00000051401	Kctd16	4930434H12Rik|Gm1267	potassium channel tetramerisation domain containing 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-10725545-4	chr18	10725436	10725636	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144860)	promoter-TSS (NM_144860)	-89.0	NM_144860	225164.0	Mm.21500	NM_144860	ENSMUSG00000024294	Mib1	DIP-1|E430019M12Rik|Mib|mKIAA1323	mindbomb E3 ubiquitin protein ligase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-103426535-2	chr12	103426435	103426635	+	668.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020494)	promoter-TSS (NM_020494)	-668.0	NM_020494	27225.0	Mm.3935	NM_020494	ENSMUSG00000041645	Ddx24	1700055J08Rik|2510027P10Rik|AI649272	DEAD (Asp-Glu-Ala-Asp) box polypeptide 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-19778114-1	chr14	19778014	19778214	+	811.0	f0_balb.idr	exon (NM_008695, exon 5 of 21)	exon (NM_008695, exon 5 of 21)	26857.0	NM_008695	18074.0	Mm.20348	NM_008695	ENSMUSG00000021806	Nid2	AW547149|Ly111|NID-2|entactin-2|nidogen-2	nidogen 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118130195-3	chr11	118130138	118130338	+	686.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1019.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-21372674-4	chr5	21372576	21372776	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008013)	promoter-TSS (NM_008013)	3.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-98091770-4	chr6	98091672	98091872	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	99989.0	NM_008601	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-152030298-2	chr2	152030198	152030398	+	923.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30432.0	NM_001164820	69698.0	Mm.258262	NM_027172	ENSMUSG00000027463	Slc52a3	2310046K01Rik|RFT2	solute carrier protein family 52, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-71434192-2	chr6	71434092	71434292	+	808.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355745, intron 1 of 9)	intron (NM_001355745, intron 1 of 9)	6445.0	NM_001355745	68477.0	Mm.28474	NM_024288	ENSMUSG00000002222	Rmnd5a	1110007A06Rik|AJ237586|AW125795|Gid2|MTA.D02.090	required for meiotic nuclear division 5 homolog A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-34851297-2	chr18	34851197	34851397	+	664.900024	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9910.0	NM_007913	13653.0	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28510629-4	chr17	28510545	28510745	+	976.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20216.0	NM_026290	67645.0	Mm.46170	NM_026290	ENSMUSG00000024223	Armc12	4930511I11Rik|AV041658	armadillo repeat containing 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-22297157-4	chr16	22297059	22297259	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	2171.0	NR_153764	100043507.0		NR_153764		Gng5-ps	Gm15776	G protein subunit gamma 5, pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-170130671-3	chr2	170130572	170130772	+	930.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159683, intron 2 of 6)	CpG	548.0	NM_001033299	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-86525483-2	chr6	86525382	86525582	+	1000.0	f0_balb.idr|f0_c57.idr	exon (NM_011865, exon 1 of 1)	exon (NM_011865, exon 1 of 1)	707.0	NM_011865	23983.0	Mm.274146	NM_011865	ENSMUSG00000051695	Pcbp1	WBP17|[a]CP-1|alphaCP-1|hnRNP E1|hnRNP-E1	poly(rC) binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-72166966-2	chr5	72166866	72167066	+	633.458374	f1_balb.idr|f1_c57bl6.idr	intron (NM_178599, intron 1 of 4)	intron (NM_178599, intron 1 of 4)	1223.0	NM_001356611	27784.0	Mm.44223	NM_178599	ENSMUSG00000029213	Commd8	C77770|D5Buc26e	COMM domain containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83663742-4	chr11	83663629	83663829	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013652, intron 2 of 2)	intron (NM_013652, intron 2 of 2)	1145.0	NM_013652	20303.0	Mm.244263	NM_013652	ENSMUSG00000018930	Ccl4	AT744.1|Act-2|MIP-1B|Mip1b|Scya4	chemokine (C-C motif) ligand 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80783336-2	chr7	80783234	80783434	+	766.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016721, intron 2 of 37)	intron (NM_016721, intron 2 of 37)	19997.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	-0.747417669733012	-0.919416462892492	-1.0997481980601	-1.10689226959301	-0.968111580796424	-1.08663698954833	-1.09730874705233	-1.10657708790443	-1.54963029716157	0.608648940279066	1
Merged-chr2-181365992-3	chr2	181365911	181366111	+	986.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001165991)	promoter-TSS (NM_001165991)	588.0	NM_001048148	229007.0	Mm.87720	NM_144894	ENSMUSG00000027582	Zgpat	1500006I01Rik|BC021513	zinc finger, CCCH-type with G patch domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-34196264-1	chr7	34196164	34196364	+	1000.0	f0_balb.idr	intron (NM_026549, intron 2 of 6)	CpG	406.0	NM_026549	68079.0	Mm.38173	NM_026549	ENSMUSG00000002635	Pdcd2l	6030457N17Rik	programmed cell death 2-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-59556416-2	chr13	59556316	59556516	+	594.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001048008, intron 1 of 17)	intron (NM_001048008, intron 1 of 17)	506.0	NM_001284219	67269.0	Mm.153008	NM_023328	ENSMUSG00000021557	Agtpbp1	1700020N17Rik|2310001G17Rik|2900054O13Rik|4930445M19Rik|5730402G09Rik|CCP1|Nna1|nmf243|pcd	ATP/GTP binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-76415550-9	chr14	76415433	76415633	+	939.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207652)	promoter-TSS (NM_207652)	-288.0	NM_207652	21807.0	Mm.153272	NM_009366	ENSMUSG00000022010	Tsc22d1	AA589566|AW105905|Egr5|TSC-22|Tgfb1i4|Tsc|Tsc22	TSC22 domain family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6297828-4	chr19	6297715	6297915	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010119, intron 4 of 4)	intron (NM_010119, intron 4 of 4)	-8642.0	NM_001033342	240505.0	Mm.329622	NM_001033342	ENSMUSG00000024769	Cdc42bpg	BC046418|MRCKgamma	CDC42 binding protein kinase gamma (DMPK-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84065754-2	chr8	84065654	84065854	+	977.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1082.0	NM_009055	19724.0	Mm.7892	NM_009055	ENSMUSG00000031706	Rfx1	AI047719|AI385641	regulatory factor X, 1 (influences HLA class II expression)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-24975609-4	chr12	24975512	24975712	+	934.2291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081378, intron 1 of 31)	intron (NM_001081378, intron 1 of 31)	680.0	NM_001081378	77480.0	Mm.250641	NM_001081378	ENSMUSG00000036333	Kidins220	3110039L19Rik|AI194387|AI316525|C330002I19Rik|mKIAA1250	kinase D-interacting substrate 220	protein-coding	0.666120884463873	0.23033776962796	0.661189842893677	0.220128976689845	0.676067166238405	0.231639939755274	0.670507823550143	0.220904171574607	0.0413502936161977	0.983290037915036	1
Merged-chr16-95964668-2	chr16	95964568	95964768	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26292.0	NM_019537	56088.0	Mm.396248	NM_019537	ENSMUSG00000022913	Psmg1	AW552102|Dscr2	proteasome (prosome, macropain) assembly chaperone 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97501194-2	chr6	97501094	97501294	+	960.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	B2_Mm2|SINE|B2	-13374.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45515663-4	chr7	45515549	45515749	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045555, intron 4 of 13)	intron (NM_001045555, intron 4 of 13)	1047.0	NM_001290998	56734.0	Mm.439742	NM_008807	ENSMUSG00000023467	Tulp2	Pdet	tubby-like protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-9753846-3	chr3	9753738	9753938	+	873.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053182, intron 1 of 7)	intron (NM_053182, intron 1 of 7)	79841.0	NM_053182	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-64956865-2	chr14	64956765	64956965	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253731, intron 1 of 16)	intron (NM_001253731, intron 1 of 16)	6820.0	NM_001253731	210925.0	Mm.71332	NM_153414	ENSMUSG00000021975	Ints9	BC028953|D14Ertd231e	integrator complex subunit 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-90514973-4	chr3	90514945	90515145	+	850.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011309)	promoter-TSS (NM_011309)	610.0	NM_009113	20196.0	Mm.6523	NM_009113	ENSMUSG00000042312	S100a13	-	S100 calcium binding protein A13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133009423-2	chr4	133009323	133009523	+	644.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2083.0	NM_146155	230793.0	Mm.31816	NM_146155	ENSMUSG00000037692	Ahdc1	D030015G18Rik	AT hook, DNA binding motif, containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-106059423-4	chr8	106059304	106059504	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010901)	promoter-TSS (NM_010901)	-199.0	NM_010901	18021.0	Mm.383185	NM_010901	ENSMUSG00000031902	Nfatc3	C80703|D8Ertd281e|NFAT4|NFATx	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6046495-4	chr19	6046391	6046591	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028769)	promoter-TSS (NM_028769)	-85.0	NM_028769	74126.0	Mm.149870	NM_028769	ENSMUSG00000024807	Syvn1	1200010C09Rik|AW211966|C85322|D530017H19Rik|Hrd1	synovial apoptosis inhibitor 1, synoviolin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-33131126-6	chr2	33131026	33131226	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355200)	promoter-TSS (NM_001355200)	310.0	NM_001355201	99326.0	Mm.41290	NM_178888	ENSMUSG00000038860	Garnl3	AW120551	GTPase activating RANGAP domain-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167749708-2	chr2	167749608	167749808	+	673.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	58531.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-35751731-2	chr7	35751631	35751831	+	876.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178704, intron 2 of 18)	RSINE1|SINE|B4	2723.0	NM_178704	233115.0	Mm.257808	NM_178704	ENSMUSG00000043671	Dpy19l3	6030410G08|9330164H19Rik	dpy-19-like 3 (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-132007523-4	chr1	132007428	132007628	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007923)	promoter-TSS (NM_007923)	-77.0	NM_007923	13714.0	Mm.254233	NM_007923	ENSMUSG00000026436	Elk4	2310011G17Rik|A130026I01Rik|BB162516|SAP-1|Sap1	ELK4, member of ETS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72559030-2	chr6	72558930	72559130	+	600.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001042534, intron 8 of 9)	MER5A|DNA|hAT-Charlie	9383.0	NM_001271395	12332.0	Mm.18626	NM_007599	ENSMUSG00000056737	Capg	gCap39|mbh1	capping protein (actin filament), gelsolin-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-44098806-2	chr16	44098706	44098906	+	788.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_007508, exon 12 of 15)	exon (NM_007508, exon 12 of 15)	40453.0	NM_001358203	11964.0	Mm.217787	NM_007508	ENSMUSG00000052459	Atp6v1a	AI647066|Atp6a1|Atp6a2|Atp6v1a1|VA68|VPP2	ATPase, H+ transporting, lysosomal V1 subunit A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-35838551-4	chr11	35838428	35838628	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_170779)	TTS (NM_170779)	-4000.0	NM_025936	104458.0	Mm.284906	NM_025936	ENSMUSG00000018848	Rars	2610011N19Rik|2610037E21Rik|AL033339|AW985894	arginyl-tRNA synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-24577985-4	chr16	24577897	24578097	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 4 of 12)	intron (NM_178665, intron 4 of 12)	48683.0	NR_038091	624582.0	Mm.439775	NR_038091		Morf4l1-ps1	A730098P11Rik	mortality factor 4 like 1, pseudogene 1	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-43354581-4	chr5	43354554	43354754	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-119300.0	NR_028417	665934.0	Mm.381491	NR_028417	ENSMUSG00000085720	Gm7854	EG665934	predicted gene 7854	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119126595-3	chr11	119126488	119126688	+	949.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27549.0	NR_105899	102465563.0		NR_105899	ENSMUSG00000098704	Mir6934	Gm27523|mmu-mir-6934	microRNA 6934	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135350307-2	chr4	135350207	135350407	+	821.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016799, intron 1 of 17)	intron (NM_016799, intron 1 of 17)	2907.0	NM_016799	51796.0	Mm.1963	NM_016799	ENSMUSG00000028809	Srrm1	AA407769|POP101|Srm160	serine/arginine repetitive matrix 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-46657288-3	chr4	46657163	46657363	+	656.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7064.0	NM_198664	381605.0	Mm.331595	NM_198664	ENSMUSG00000039813	Tbc1d2	A630005A06Rik|BC022630|Gm1037|PARIS-1|PARIS1	TBC1 domain family, member 2	protein-coding	3.08145603733963	2.67142125361901	2.44481658959822	3.01720802456042	3.16899267599258	2.69066681801136	2.46348574995948	3.03214357976947	0.0762599425707298	0.911483841625578	0.998431161219273
Merged-chr6-93657711-1	chr6	93657611	93657811	+	563.0	f1_c57bl6.idr	Intergenic	Intergenic	255252.0	NR_104594	14924.0	Mm.217216	NM_010367	ENSMUSG00000045095	Magi1	AIP3|BAP1|Baiap1|Gukmi1|MAGI1c|Magi-1|TNRC19|WWP3|mKIAA4129	membrane associated guanylate kinase, WW and PDZ domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-35751964-2	chr5	35751864	35752064	+	804.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-5916.0	NM_001177697	231148.0	Mm.254446	NM_177678	ENSMUSG00000029095	Ablim2	AI606905|C230091L11	actin-binding LIM protein 2	protein-coding	-0.909295505863045	-0.895817397635963	-0.903477811800931	-0.377229608855546	-0.908756792193705	-0.893159199153952	-0.902850713633907	-0.599585791608563	-0.896592185565226	0.77398904461321	1
Merged-chr11-54520481-4	chr11	54520387	54520587	+	723.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-2358.0	NM_001252494	192786.0	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-31076547-4	chr2	31076456	31076656	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355105, intron 6 of 15)	B3A|SINE|B2	19944.0	NM_001177650	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-24894396-2	chr4	24894296	24894496	+	595.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa-int|LTR|ERVL-MaLR	-3687.0	NM_026742	68493.0	Mm.204831	NM_026742	ENSMUSG00000028261	Ndufaf4	1110007M04Rik|3000003G13Rik|AW214064	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-56756360-4	chr6	56756228	56756428	+	868.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030235, intron 15 of 15)	intron (NM_030235, intron 15 of 15)	40885.0	NM_001362211	210973.0	Mm.57295	NM_145958	ENSMUSG00000059486	Kbtbd2	BC022962|Bklhd1|mKIAA1489	kelch repeat and BTB (POZ) domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-3420328-4	chr5	3420210	3420410	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 3 of 7)	intron (NM_009873, intron 3 of 7)	76417.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124025316-4	chr5	124025241	124025441	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177876, intron 1 of 3)	intron (NM_177876, intron 1 of 3)	6919.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35178222-2	chr17	35178123	35178323	+	598.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2171.0	NM_001361501	11629.0	Mm.10747	NM_019467	ENSMUSG00000024397	Aif1	AI607846|AIF-1|D17H6S50E|G1|Iba1	allograft inflammatory factor 1	protein-coding	0.188055670969746	1.35521879590857	0.995136951910916	0.401462679820556	0.189962220075375	0.219996600542603	0.428814678875746	0.202067930455621	-3.66706838733459	0.0541867276800783	1
Merged-chr6-13684252-3	chr6	13684133	13684333	+	737.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-6267.0	NM_175312	101148.0	Mm.354863	NM_175312	ENSMUSG00000042742	Bmt2	AI666701|B630005N14Rik	base methyltransferase of 25S rRNA 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69070796-4	chr11	69070668	69070868	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025838)	promoter-TSS (NM_025838)	-41.0	NM_025838	66910.0	Mm.33964	NM_025838	ENSMUSG00000020895	Tmem107	1110004B13Rik|2810049P21Rik	transmembrane protein 107	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70021596-4	chr11	70021506	70021706	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007864, intron 1 of 19)	CpG	3001.0	NM_007864	13385.0	Mm.27256	NM_007864	ENSMUSG00000020886	Dlg4	Dlgh4|PSD-95|PSD95|SAP90|SAP90A	discs large MAGUK scaffold protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-16073526-4	chr16	16073419	16073619	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355731, intron 5 of 18)	intron (NM_001355731, intron 5 of 18)	73332.0	NM_001355731	224008.0	Mm.244703	NM_146068	ENSMUSG00000041974	Spidr	2310008H04Rik|Kiaa0146	scaffolding protein involved in DNA repair	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-52302397-4	chr12	52302284	52302484	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029760, intron 8 of 10)	intron (NM_029760, intron 8 of 10)	178225.0	NR_136881	102638611.0	Mm.363799	NR_136881	ENSMUSG00000111982	Gm35135	-	predicted gene, 35135	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-10438282-3	chr12	10438213	10438413	+	868.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8075.0	NR_110487	328061.0	Mm.56067	NR_110487	ENSMUSG00000112792	Gm38407	4931412M21	predicted gene, 38407	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-21035883-4	chr5	21035784	21035984	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356590)	promoter-TSS (NM_001356590)	-637.0	NM_001356590	19248.0	Mm.319117	NM_011203	ENSMUSG00000028771	Ptpn12	P19-PTP|PTP-P19|PTP-PEST|PTPG1	protein tyrosine phosphatase, non-receptor type 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-67951012-4	chr7	67950917	67951117	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1240.0	NM_010513	16001.0	Mm.275742	NM_010513	ENSMUSG00000005533	Igf1r	A330103N21Rik|CD221|D930020L01|IGF-1R|hyft	insulin-like growth factor I receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-60738649-4	chr13	60738541	60738741	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 18 of 26)	intron (NM_134062, intron 18 of 26)	47723.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	4.79096025793233	4.26448029210584	3.99337739280051	3.15944877060081	4.30358777288288	4.08577206814412	4.53971937111018	4.5866862952141	0.276042798247509	0.547533219153857	0.957826773868235
Merged-chr19-11336161-4	chr19	11336108	11336308	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001025610)	promoter-TSS (NM_001025610)	-62.0	NM_027836	109225.0	Mm.491251	NM_027836	ENSMUSG00000024672	Ms4a7	9130422I10Rik|A430103C15Rik|CD20l4|CFFMA	membrane-spanning 4-domains, subfamily A, member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-73168789-2	chr11	73168689	73168889	+	686.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_033321, intron 10 of 12)	intron (NM_033321, intron 10 of 12)	8219.0	NM_001168470	66048.0	Mm.73608	NM_025318	ENSMUSG00000047260	Emc6	0610009E20Rik|0610025L18Rik|Tmem93	ER membrane protein complex subunit 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165364047-1	chr2	165363947	165364147	+	586.0	f1_balb.idr	Intergenic	Intergenic	-1928.0	NM_001005425	381405.0	Mm.296323	NM_001005425	ENSMUSG00000056824	Zfp663	Gm1008	zinc finger protein 663	protein-coding	1.20841382957926	0.798988384176132	0.784780745280986	1.27934884574107	1.69455375902269	1.85394447401225	1.00335561307587	1.1436157153641	1.73245000833032	0.201812879490967	0.68736305681282
Merged-chr7-83847575-2	chr7	83847503	83847703	+	793.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36738.0	NM_030705	80889.0	Mm.272998	NM_030705	ENSMUSG00000070462	Tlnrd1	AW061151|Mesdc1	talin rod domain containing 1	protein-coding	-0.654740489293522	-0.639286857007112	-0.64429328752332	-0.451948390429887	-0.653760569980162	0.407051126931957	-0.643184462147663	-0.647509357421653	2.82666907351319	0.294305200393069	1
Merged-chr9-53818932-3	chr9	53818839	53819039	+	586.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_028060)	TTS (NM_028060)	-31312.0	NM_025540	66402.0	Mm.29132	NM_025540	ENSMUSG00000042045	Sln	2310045A07Rik	sarcolipin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-53851370-1	chr19	53851270	53851470	+	552.0	f1_balb.idr	exon (NM_001170847, exon 11 of 14)	exon (NM_001170847, exon 11 of 14)	-40861.0	NM_011050	18569.0	Mm.1605	NM_011050	ENSMUSG00000024975	Pdcd4	D19Ucla1|Ma3|Tis	programmed cell death 4	protein-coding	0.207296158261333	-0.121081124525031	-0.130241551246898	0.0826228502394412	-0.147864966189787	-0.119043852000766	1.33451306743123	-0.136182687994395	2.29545455227139	0.28173589831296	1
Merged-chr11-93856501-2	chr11	93856401	93856601	+	752.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29265.0	NM_001013375	217109.0	Mm.379350	NM_001013375	ENSMUSG00000054079	Utp18	6230425C22Rik|6430513M13|Wdr50	UTP18 small subunit processome component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-69733696-2	chr14	69733596	69733796	+	726.833313	f1_balb.idr|f1_c57bl6.idr	intron (NR_130157, intron 1 of 2)	B3|SINE|B2	862.0	NR_130157	75016.0	Mm.394574	NR_130157	ENSMUSG00000097284	4930480K23Rik	-	RIKEN cDNA 4930480K23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122381226-1	chr5	122381126	122381326	+	542.0	f1_c57bl6.idr	exon (NM_024216, exon 5 of 8)	exon (NM_024216, exon 5 of 8)	8718.0	NM_024216	68080.0	Mm.266328	NM_024216	ENSMUSG00000029464	Gpn3	A930018B01Rik|Atpbd1c|D5Ertd708e	GPN-loop GTPase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-86182786-4	chr15	86182682	86182882	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145475, intron 1 of 12)	intron (NM_145475, intron 1 of 12)	-2946.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152560977-4	chr1	152560878	152561078	+	835.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 4 of 17)	intron (NM_016846, intron 4 of 17)	64239.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-83977363-2	chr5	83977263	83977463	+	581.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT2B4|LTR|ERVL	440019.0	NM_007937	13839.0	Mm.137991	NM_007937	ENSMUSG00000029245	Epha5	AI854630|AW125296|Cek7|Ehk1|Els1|Hek7|Rek7|bsk	Eph receptor A5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-12698091-3	chr10	12697985	12698185	+	765.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011682, exon 24 of 74)	exon (NM_011682, exon 24 of 74)	163650.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-98167778-4	chr15	98167694	98167894	+	780.799988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177716)	promoter-TSS (NM_177716)	-12.0	NM_177716	239650.0	Mm.54140	NM_177716	ENSMUSG00000029875	Ccdc184	5630400A08|AI836003	coiled-coil domain containing 184	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-4309836-3	chr7	4309729	4309929	+	732.861084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13B1|LTR|ERVK	-27895.0	NM_010746	17086.0	Mm.240231	NM_010746	ENSMUSG00000062524	Ncr1	Ly94|NKp46	natural cytotoxicity triggering receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-99009751-4	chr9	99009644	99009844	+	846.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080776, intron 6 of 7)	intron (NM_001080776, intron 6 of 7)	23371.0	NM_001122851	23873.0	Mm.74605	NM_011810	ENSMUSG00000032463	Faim	-	Fas apoptotic inhibitory molecule	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-8846411-1	chr4	8846311	8846511	+	551.0	f1_balb.idr	intron (NM_001355382, intron 20 of 36)	intron (NM_001355382, intron 20 of 36)	95087.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-116895975-2	chr2	116895875	116896075	+	639.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-4177.0	NR_040336	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-5079113-2	chr7	5079013	5079213	+	734.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205231, intron 11 of 11)	intron (NM_001205231, intron 11 of 11)	-1122.0	NM_010147	13854.0	Mm.3091	NM_010147	ENSMUSG00000035203	Epn1	AA269831|Ibp1	epsin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-35234899-4	chr7	35234805	35235005	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19560.0	NM_001024707	435965.0	Mm.333783	NM_001024707	ENSMUSG00000001802	Lrp3	-	low density lipoprotein receptor-related protein 3	protein-coding	6.09955280643804	6.36312854867334	5.7652964423633	6.30662929867457	6.73194735691459	6.60586794561041	6.78749486438045	6.25262700569922	0.495167537684216	0.0240505679168119	0.203535542265229
Merged-chr10-63309182-4	chr10	63309094	63309294	+	896.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359484, intron 17 of 22)	intron (NM_001359484, intron 17 of 22)	29841.0	NM_019812	93759.0	Mm.351459	NM_019812	ENSMUSG00000020063	Sirt1	AA673258|SIR2L1|Sir2|Sir2a|Sir2alpha	sirtuin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91970285-2	chr2	91970185	91970385	+	893.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6722.0	NM_138306	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	-1.21575676353841	-1.1882771616738	-1.1995328574972	-1.2087786211754	-1.21524488394202	-1.18583800543462	-1.19698481468061	-0.540595393272118	2.74438217975722	0.425994238664144	1
Merged-chr14-8356244-2	chr14	8356144	8356344	+	747.599976	f1_balb.idr|f1_c57bl6.idr	intron (NM_146050, intron 6 of 9)	intron (NM_146050, intron 6 of 9)	-11196.0	NR_151471	102632156.0		NR_151471		2610318M16Rik	-	RIKEN cDNA 2610318M16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-30886450-2	chr3	30886350	30886550	+	660.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286995, intron 2 of 2)	RMER1B|Other|Other	30500.0	NM_001286994	71862.0	Mm.272019	NM_027965	ENSMUSG00000037661	Gpr160	1700025D19Rik|GPCR150	G protein-coupled receptor 160	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-26552105-2	chr2	26552005	26552205	+	625.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28951.0	NM_178444	353156.0	Mm.268933	NM_178444	ENSMUSG00000026921	Egfl7	VE-statin|Zneu1	EGF-like domain 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91054045-4	chr2	91053987	91054187	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008948)	promoter-TSS (NM_008948)	71.0	NM_008948	19182.0	Mm.289832	NM_008948	ENSMUSG00000002102	Psmc3	TBP-1	proteasome (prosome, macropain) 26S subunit, ATPase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-143221327-3	chr6	143221237	143221437	+	854.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24551.0	NR_027803	52285.0	Mm.354898	NM_001033129		D6Ertd474e	1700001I24Rik|AU023129	DNA segment, Chr 6, ERATO Doi 474, expressed	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-69559958-1	chr13	69559858	69560058	+	661.0	f0_balb.idr	Intergenic	Intergenic	-26094.0	NM_001169131	210106.0	Mm.315959	NM_198600	ENSMUSG00000034575	Papd7	LAK-1|POLK|Pols|TRF4|TRF4-1	PAP associated domain containing 7	protein-coding	-0.654027389775865	-0.644714799468413	-0.647781846314695	-0.650137513553664	-0.197819380313484	-0.456590300763833	-0.331364188057926	-0.649726657090816	3.2017055472847	0.230597959536611	1
Merged-chr7-84611761-4	chr7	84611643	84611843	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5801.0	NM_010176	14085.0	Mm.3798	NM_010176	ENSMUSG00000030630	Fah	swst	fumarylacetoacetate hydrolase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-16115404-2	chr1	16115304	16115504	+	907.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_133832, intron 2 of 5)	intron (NM_133832, intron 2 of 5)	9522.0	NM_133832	98711.0	Mm.274376	NM_133832	ENSMUSG00000025921	Rdh10	3110069K09Rik|4921506A21Rik|AI875664|AW549993|D1Ertd762e|m366Asp	retinol dehydrogenase 10 (all-trans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140736340-3	chr5	140736248	140736448	+	981.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173405, intron 2 of 7)	intron (NM_173405, intron 2 of 7)	12221.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85393183-2	chr12	85393083	85393283	+	623.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-18466.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-33937047-2	chr17	33936947	33937147	+	602.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009059, intron 17 of 17)	intron (NM_009059, intron 17 of 17)	3283.0	NM_001185182	14976.0	Mm.2948	NM_010385	ENSMUSG00000024309	Pfdn6	H-2Ke2|H2-Ke2|Ke-2	prefoldin subunit 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105622023-1	chr8	105621923	105622123	+	540.0	f1_c57bl6.idr	3' UTR (NM_001081241, exon 22 of 22)	3' UTR (NM_001081241, exon 22 of 22)	6557.0	NR_035492	100316712.0		NR_035492	ENSMUSG00000089432	Mir1966	mir-1966|mmu-mir-1966	microRNA 1966	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-123868658-2	chr9	123868558	123868758	+	824.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6629.0	NM_011798	23832.0	Mm.390241	NM_011798	ENSMUSG00000060509	Xcr1	Ccxcr1|Gpr5|mXcr1	chemokine (C motif) receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94576484-2	chr10	94576384	94576584	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177026, intron 1 of 3)	intron (NM_177026, intron 1 of 3)	221.0	NM_177026	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-88335036-2	chr10	88334936	88335136	+	583.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027878, intron 4 of 6)	intron (NM_027878, intron 4 of 6)	22039.0	NM_027878	71712.0	Mm.35450	NM_027878	ENSMUSG00000020057	Dram1	1200002N14Rik|Dram	DNA-damage regulated autophagy modulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-72396624-4	chr4	72396505	72396705	+	906.4249880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	195361.0	NR_027923	68285.0	Mm.37541	NR_027923		C630043F03Rik	AI851307	RIKEN cDNA C630043F03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-105809697-2	chr1	105809597	105809797	+	717.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009399, intron 3 of 9)	MIRb|SINE|MIR	28974.0	NM_009399	21934.0	Mm.6251	NM_009399	ENSMUSG00000026321	Tnfrsf11a	Ly109|ODFR|OFE|Rank|TRANCE-R|mRANK	tumor necrosis factor receptor superfamily, member 11a, NFKB activator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-142039788-2	chr7	142039688	142039888	+	600.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357705, intron 1 of 4)	intron (NM_001357705, intron 1 of 4)	21065.0	NM_001347560	101513.0	Mm.53259	NM_028308	ENSMUSG00000025147	Mob2	1110017M21Rik|2700078K21Rik|AI256456|Mmh	MOB kinase activator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-116697598-2	chr6	116697498	116697698	+	927.5833130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_178768, intron 3 of 4)	intron (NM_178768, intron 3 of 4)	19160.0	NM_178768	319776.0	Mm.133120	NM_178768	ENSMUSG00000048108	Tmem72	C230095G01Rik	transmembrane protein 72	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-13004844-2	chr18	13004744	13004944	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	-2146.0	NM_153087	225192.0	Mm.207073	NM_153087	ENSMUSG00000037346	Hrh4	AXOR35|BG26|GPCR105|GPRv53|H4|H4R|HH4R	histamine receptor H4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-60968710-4	chr8	60968605	60968805	+	918.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007711, intron 1 of 11)	Lx8|LINE|L1	-13906.0	NM_173876	12725.0	Mm.25263	NM_007711	ENSMUSG00000004319	Clcn3	Clc3	chloride channel, voltage-sensitive 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-51115950-4	chr13	51115833	51116033	+	956.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001283029, intron 1 of 5)	intron (NM_001283029, intron 1 of 5)	14386.0	NM_001283029	20729.0	Mm.188432	NM_011462	ENSMUSG00000021395	Spin1	Spin	spindlin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-79024537-1	chr12	79024437	79024637	+	933.0	f1_c57bl6.idr	Intergenic	Intergenic	-4626.0	NM_181073	211945.0	Mm.478321	NM_181073	ENSMUSG00000060716	Plekhh1	AV308913|C77772|D630024D12Rik|mKIAA1200	pleckstrin homology domain containing, family H (with MyTH4 domain) member 1	protein-coding	1.69868017481936	1.55229656387947	1.25764463890216	0.557711762617229	0.886954029181368	0.584421721187355	0.5711257773756	0.559551784415969	-3.39336000454376	0.0460673629426318	0.3097585676989
Merged-chr17-56159927-4	chr17	56159871	56160071	+	837.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2520.0	NM_025566	66443.0	Mm.2312	NM_025566	ENSMUSG00000044469	Tnfaip8l1	2600017J23Rik|TIPE1	tumor necrosis factor, alpha-induced protein 8-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-96776844-4	chr15	96776728	96776928	+	807.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-77100.0	NM_175121	67760.0	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131482464-3	chr1	131482368	131482568	+	654.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081011, intron 2 of 22)	intron (NM_001081011, intron 2 of 22)	44893.0	NM_001081011	14270.0	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-52012142-3	chr6	52012031	52012231	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018773, intron 1 of 12)	intron (NM_018773, intron 1 of 12)	418.0	NM_018773	54353.0	Mm.221479	NM_018773	ENSMUSG00000059182	Skap2	2610021A10Rik|AA960083|BB137539|RA70|SKAP-HOM|Saps|Scap2|mSKAP55R	src family associated phosphoprotein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-32855191-2	chr12	32855091	32855291	+	956.400024	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31075.0	NR_045032	100504486.0	Mm.440246	NR_045032		Gdap10	Gdap-ps	ganglioside-induced differentiation-associated-protein 10	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-27366160-2	chr7	27366029	27366229	+	686.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199236, intron 12 of 18)	B4|SINE|B4	-10121.0	NM_138676	192192.0	Mm.21297	NM_138676	ENSMUSG00000089832	Shkbp1	B930062H15Rik|Sb1	Sh3kbp1 binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-102446228-2	chr11	102446128	102446328	+	708.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_199200, intron 1 of 7)	intron (NM_199200, intron 1 of 7)	1435.0	NM_199200	217219.0	Mm.259924	NM_199200	ENSMUSG00000034685	Fam171a2	-	family with sequence similarity 171, member A2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-58226058-3	chr9	58225955	58226155	+	838.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008884, intron 6 of 7)	intron (NM_008884, intron 6 of 7)	4905.0	NR_105806	102466639.0		NR_105806	ENSMUSG00000098886	Mir6385	Gm28021|mmu-mir-6385	microRNA 6385	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129633484-4	chr2	129633382	129633582	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	38020.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	6.84718991809292	6.77112291449395	6.92713702538463	6.52612453049965	6.99898982287864	7.11516720528693	6.87315747600517	7.15727983256984	0.279846758144548	0.110847574754597	0.521003865985499
Merged-chr1-157380925-4	chr1	157380832	157381032	+	961.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177644, intron 1 of 17)	intron (NM_177644, intron 1 of 17)	-31420.0	NR_027984	69953.0	Mm.286863	NM_027274	ENSMUSG00000049881	2810025M15Rik	AI429618	RIKEN cDNA 2810025M15 gene	ncRNA	4.80814620874183	4.12485554798844	3.98520236081848	5.11965681100716	4.9592105653777	4.29994895207743	4.01678461946187	4.9235894862862	0.0212735987165147	0.959824733963874	0.998431161219273
Merged-chr1-124072797-2	chr1	124072697	124072897	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27238.0	NM_199021	269109.0	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	2.95393947756351	4.18762608369476	3.32271699234505	3.77398214330346	2.98033659812103	4.3237141932561	3.34943161356833	3.79266036498003	0.0985129680537605	0.862792690141298	0.998431161219273
Merged-chr14-66812869-2	chr14	66812769	66812969	+	546.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009955, intron 11 of 13)	URR1A|DNA|hAT-Charlie	55731.0	NM_009955	12934.0	Mm.352648	NM_009955	ENSMUSG00000022048	Dpysl2	AI851130|Crmp2|DRP2|Musunc33|TOAD-64|Ulip2	dihydropyrimidinase-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-85709447-4	chr15	85709382	85709582	+	826.200012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	2163.0	NR_029727	387245.0		NR_029727	ENSMUSG00000065564	Mirlet7b	Mirnlet7b|let-7b|mmu-let-7b	microRNA let7b	ncRNA	4.31940304263142	4.20639455342607	3.77387533224318	4.72357562850775	3.91141968994261	4.36393653949431	4.34223519315347	4.32163858008581	-0.0811118658672657	0.846735211221557	0.998431161219273
Merged-chr19-55227891-4	chr19	55227811	55228011	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081076, intron 7 of 20)	intron (NM_001081076, intron 7 of 20)	13325.0	NM_001081076	73707.0	Mm.489987	NM_001081076	ENSMUSG00000055523	Gucy2g	2410077I05Rik|GC-G	guanylate cyclase 2g	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-62450339-4	chr15	62450217	62450417	+	975.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-230866.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94090249-3	chr10	94090138	94090338	+	997.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053072, intron 5 of 20)	intron (NM_053072, intron 5 of 20)	54237.0	NM_053072	13998.0	Mm.269596	NM_053072	ENSMUSG00000020021	Fgd6	AA123052|Etohd4|ZFYVE24	FYVE, RhoGEF and PH domain containing 6	protein-coding	3.49228017007239	3.2922064448734	2.92387753851213	3.4162997056856	1.57749786504128	1.48334014513957	2.33234888184392	2.25405204652336	-2.66822703708739	0.00070646740873749	0.0147129445070288
Merged-chr4-83230162-1	chr4	83230062	83230262	+	642.0	f1_c57bl6.idr	intron (NM_027238, intron 19 of 19)	intron (NM_027238, intron 19 of 19)	94027.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	-0.561510084829117	0.0715265931161323	-0.55369692359288	-0.556634846399156	-0.0736449462341145	-0.549028893481784	-0.552856899374535	-0.55612166115538	-0.483665136239471	0.863802347692736	1
Merged-chr7-101415262-2	chr7	101415184	101415384	+	729.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	-6407.0	NM_001008548	207728.0	Mm.247564	NM_001008548	ENSMUSG00000030653	Pde2a	CGS-PDE|cGSPDE	phosphodiesterase 2A, cGMP-stimulated	protein-coding	1.07046233477289	1.79093142861314	2.1151340759605	1.94212718091492	1.07568083747824	1.80442097711607	2.41804527836361	2.1633369452138	0.47092811366391	0.679240848481587	0.99525161242239
Merged-chr11-54879587-4	chr11	54879481	54879681	+	996.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13198.0	NM_008248	15254.0	Mm.425	NM_008248	ENSMUSG00000020267	Hint1	AA673479|Hint|Ipk1|PKCI-1|PRKCNH1	histidine triad nucleotide binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-81052530-4	chr3	81052441	81052641	+	941.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019971, intron 1 of 5)	intron (NM_019971, intron 1 of 5)	16125.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-32129008-2	chr5	32128908	32129108	+	927.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1K|LTR|ERVL-MaLR	-7464.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139025500-2	chr5	139025400	139025600	+	581.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359099, intron 9 of 10)	intron (NM_001359099, intron 9 of 10)	-30547.0	NM_008808	18590.0	Mm.2675	NM_008808	ENSMUSG00000025856	Pdgfa	-	platelet derived growth factor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27727031-2	chr2	27726931	27727131	+	639.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290482, intron 1 of 9)	intron (NM_001290482, intron 1 of 9)	16448.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-59604131-3	chr1	59604029	59604229	+	762.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013771, intron 12 of 19)	intron (NM_001013771, intron 12 of 19)	66705.0	NM_009460	22218.0	Mm.362118	NM_009460	ENSMUSG00000026021	Sumo1	GMP1|PIC1|SENTRIN|SMT3|SMT3H3|SMTP3|SUMO-1|Smt3C|Ubl1	small ubiquitin-like modifier 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-41760229-1	chr15	41760129	41760329	+	1000.0	f0_balb.idr	intron (NR_152565, intron 3 of 17)	Lx4A|LINE|L1	-28766.0	NM_001358976	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-86013234-2	chr1	86013134	86013334	+	578.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR44-int|LTR|ERVK	-8708.0	NM_001122732	70060.0	Mm.196313	NM_027029	ENSMUSG00000026226	Spata3	1700011N12Rik|1700029H01Rik|4930424D10Rik|Mtsarg1|Tsarg1	spermatogenesis associated 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34590427-2	chr17	34590327	34590527	+	621.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_134116, intron 1 of 3)	intron (NM_134116, intron 1 of 3)	621.0	NM_134116	106512.0	Mm.26584	NM_134116	ENSMUSG00000034786	Gpsm3	AA960287|AGS4	G-protein signalling modulator 3 (AGS3-like, C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-76130352-2	chr6	76130252	76130452	+	569.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6C|LTR|ERVK	-1112125.0	NR_155299	74342.0	Mm.292568	NM_028880	ENSMUSG00000060780	Lrrtm1	4632401D06Rik|AW125451	leucine rich repeat transmembrane neuronal 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-107326359-4	chr11	107326237	107326437	+	779.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359616, intron 2 of 8)	intron (NM_001359616, intron 2 of 8)	-136956.0	NM_001161329	68979.0	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85703638-4	chr12	85703523	85703723	+	687.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016767, intron 2 of 2)	intron (NM_016767, intron 2 of 2)	16903.0	NM_016767	53314.0	Mm.6672	NM_016767	ENSMUSG00000034266	Batf	B-ATF|SFA-2	basic leucine zipper transcription factor, ATF-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-51270990-2	chr7	51270890	51271090	+	659.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-240039.0	NR_073508	233246.0	Mm.254431	NM_177694	ENSMUSG00000055489	Ano5	9330162L24|Gdd1|Tmem16e	anoctamin 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24707634-4	chr17	24707549	24707749	+	979.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145396)	promoter-TSS (NM_145396)	4.0	NM_145396	213773.0	Mm.100353	NM_145396	ENSMUSG00000040688	Tbl3	9430070M15Rik	transducin (beta)-like 3	protein-coding	4.47168010800804	3.78459181186992	3.74115309705243	4.31234169601451	4.39428241711218	4.12927494472316	3.85059869101368	4.1254660409159	0.022003265815377	0.959978185500176	0.998431161219273
Merged-chr10-4456616-3	chr10	4456523	4456723	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB8|LINE|L1	24018.0	NM_024261	73419.0	Mm.346733	NM_024261	ENSMUSG00000061759	Armt1	1700052N19Rik|AW320013|AW536799	acidic residue methyltransferase 1	protein-coding	0.95526204525402	0.473395740436708	1.17732414704975	0.457575111464387	1.14680122132616	1.0077521510372	0.466462632338229	0.458786864405993	0.0211150583455844	0.990512885193735	1
Merged-chr10-117304010-2	chr10	117303910	117304110	+	694.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11142.0	NM_013590	17110.0	Mm.177539	NM_013590	ENSMUSG00000069515	Lyz1	Lyz|Lyzf3|Lzp-s	lysozyme 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-137779245-2	chr5	137779145	137779345	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027242, intron 1 of 3)	CpG	341.0	NM_027242	69871.0	Mm.276058	NM_027242	ENSMUSG00000029725	Ppp1r35	2010007H12Rik|2010011D20Rik|AL024004	protein phosphatase 1, regulatory subunit 35	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133277729-4	chr4	133277648	133277848	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_110978)	promoter-TSS (NR_110978)	42.0	NM_025667	52174.0	Mm.244748	NM_025667	ENSMUSG00000028857	Tmem222	5730406H10Rik|AA409341|D4Ertd196e	transmembrane protein 222	protein-coding	6.08120809673424	5.36379945593349	6.07220834000716	6.07993075011629	5.54993625575471	4.59395853468749	5.66599756688729	5.92278260928795	-0.46287560796347	0.126171098371179	0.556271743602673
Merged-chr14-31930626-4	chr14	31930545	31930745	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1G1|LTR|ERVL-MaLR	-98458.0	NM_030166	78754.0	Mm.40681	NM_030166	ENSMUSG00000021903	Galnt15	4631401E18Rik|Galntl2|mpp-GalNAc-T15	polypeptide N-acetylgalactosaminyltransferase 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47501492-2	chr17	47501392	47501592	+	658.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356290, intron 1 of 7)	B3A|SINE|B2	799.0	NM_001356290	63856.0	Mm.275901	NM_022015	ENSMUSG00000023980	Taf8	AW260255|Tbn	TATA-box binding protein associated factor 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-154913047-2	chr4	154912947	154913147	+	998.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14004.0	NM_025582	66469.0	Mm.41868	NM_025582	ENSMUSG00000029059	Fam213b	2810405K02Rik|AI836168|PM/PGFS	family with sequence similarity 213, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-45412506-4	chr9	45412405	45412605	+	906.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6428.0	NM_007503	11936.0	Mm.22742	NM_007503	ENSMUSG00000059412	Fxyd2	Atp1g1	FXYD domain-containing ion transport regulator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-88760662-3	chr4	88760553	88760753	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001085531)	promoter-TSS (NM_001085531)	-121.0	NM_001085531	545645.0	Mm.489553	NM_001085531	ENSMUSG00000100505	Gm13283	EG545645	predicted gene 13283	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-50129747-2	chr18	50129647	50129847	+	685.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008292, intron 1 of 23)	intron (NM_008292, intron 1 of 23)	1546.0	NM_008292	15488.0	Mm.277857	NM_008292	ENSMUSG00000024507	Hsd17b4	17-beta-HSD|17[b]-HSD|DBP|MFE-2|MFP2|MPF-2|Mfp-2|perMFE-2	hydroxysteroid (17-beta) dehydrogenase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-63382811-4	chr10	63382636	63382836	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253685, intron 1 of 4)	intron (NM_001253685, intron 1 of 4)	293.0	NM_001253685	30045.0	Mm.32550	NM_013888	ENSMUSG00000036764	Dnajc12	Jdp1|mJDP1	DnaJ heat shock protein family (Hsp40) member C12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-6363229-1	chr7	6363129	6363329	+	1000.0	f0_c57.idr	promoter-TSS (NM_001025163)	promoter-TSS (NM_001025163)	-79.0	NM_001025163	330463.0	Mm.136456	NM_177888	ENSMUSG00000055150	Zfp78	A330079D15|KRAB12|Zfp77	zinc finger protein 78	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-79773742-2	chr10	79773642	79773842	+	678.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 3 of 4)	PB1D10|SINE|Alu	-3532.0	NM_031380	83554.0	Mm.251710	NM_031380	ENSMUSG00000020325	Fstl3	E030038F23Rik|Flrg	follistatin-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120990537-4	chr11	120990467	120990667	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027874, intron 1 of 9)	C-rich|Low_complexity|Low_complexity	766.0	NM_139059	104318.0	Mm.216227	NM_027874	ENSMUSG00000025162	Csnk1d	1200006A05Rik|AA409348|D930010H05Rik	casein kinase 1, delta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-60305419-4	chr10	60305315	60305515	+	980.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252635, intron 65 of 68)	intron (NM_001252635, intron 65 of 68)	20954.0	NM_001146124	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	1.08979585234601	1.31995080631471	1.25127331773452	1.19421204618504	4.12222955670935	4.05571492611334	3.80999647384247	4.31663953111667	7.18175374515071	1.70081180555034e-10	3.38948968307543e-08
Merged-chr9-63974850-3	chr9	63974739	63974939	+	952.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008542, intron 3 of 3)	intron (NM_008542, intron 3 of 3)	47220.0	NM_008542	17130.0	Mm.325757	NM_008542	ENSMUSG00000036867	Smad6	Madh6|b2b390Clo	SMAD family member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-12595692-4	chr19	12595596	12595796	+	914.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015503, intron 1 of 1)	intron (NR_015503, intron 1 of 1)	870.0	NR_015503	74333.0	Mm.329744	NR_015503	ENSMUSG00000086213	A330040F15Rik	-	RIKEN cDNA A330040F15 gene	ncRNA	4.48430887104775	4.17714559920405	3.97256668443212	3.25437917951629	4.32543488683937	3.39073005165399	4.65206037846324	4.78857652175206	0.455474331533828	0.342740420820628	0.843585797799349
Merged-chr2-144009246-4	chr2	144009140	144009340	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133626, intron 1 of 2)	intron (NM_133626, intron 1 of 2)	2023.0	NM_133626	81910.0	Mm.13705	NM_024281	ENSMUSG00000027422	Rrbp1	1700087N07Rik|5730465C04Rik|ES/130|mKIAA1398|mRRp0|mRRp1.8|mRRp10|mRRp15a|mRRp15b|mRRp16.8|mRRp2|mRRp41|mRRp47|mRRp5.4|p180	ribosome binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-45447201-1	chr4	45447101	45447301	+	596.0	f1_balb.idr	intron (NM_001033306, intron 4 of 5)	intron (NM_001033306, intron 4 of 5)	-38435.0	NM_001009949	230125.0	Mm.260210	NM_001009949	ENSMUSG00000045973	Slc25a51	9130208E07Rik|D130005A03Rik|Gm138|Mcart1	solute carrier family 25, member 51	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-111461567-3	chr13	111461431	111461631	+	888.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361926, intron 2 of 10)	intron (NM_001361926, intron 2 of 10)	28596.0	NM_028487	73274.0	Mm.57286	NM_028487	ENSMUSG00000032745	Gpbp1	1700034P14Rik|AU019836|D230035M11Rik|Gpbp|mGPBP	GC-rich promoter binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-94503318-3	chr16	94503215	94503415	+	870.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007834, intron 5 of 7)	intron (NM_007834, intron 5 of 7)	23314.0	NM_007834	13185.0	Mm.7472	NM_007834	ENSMUSG00000022898	Dscr3	AW538125|Dcra	DSCR3 arrestin fold containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-110428649-2	chr11	110428549	110428749	+	601.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356352, intron 1 of 11)	intron (NM_001356352, intron 1 of 11)	29547.0	NM_001356353	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-93375405-3	chr3	93375302	93375502	+	753.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	-18297.0	NM_009100	20129.0	Mm.1417	NM_009100	ENSMUSG00000041984	Rptn	-	repetin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-112722115-3	chr12	112721995	112722195	+	891.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024602)	promoter-TSS (NM_001024602)	-79.0	NM_001024602	217882.0	Mm.23689	NM_001024602	ENSMUSG00000072825	Cep170b	AI466840|AW555464|Kiaa0284|mKIAA0284	centrosomal protein 170B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34837071-4	chr17	34836972	34837172	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163770)	promoter-TSS (NM_001163770)	53.0	NM_001163770	112403.0	Mm.275309	NM_033613	ENSMUSG00000040482	Dxo	Dom3z|NG6	decapping exoribonuclease	protein-coding	5.9138038326445	5.41271860745132	6.37565961006683	5.8525155102048	5.79862186323372	5.21966961288587	5.70546150196936	6.06623400719433	-0.218661149383693	0.433025811110008	0.905339860890661
Merged-chr10-107990085-3	chr10	107989921	107990121	+	666.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43376.0	NR_131147	628877.0	Mm.363120	NR_131147	ENSMUSG00000112910	Gm29685	-	predicted gene, 29685	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-121929104-4	chr14	121929005	121929205	+	993.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026861, intron 4 of 8)	intron (NM_026861, intron 4 of 8)	-13331.0	NM_182806	110168.0	Mm.37405	NM_182806	ENSMUSG00000050350	Gpr18	-	G protein-coupled receptor 18	protein-coding	4.03276005254861	4.03504876618705	4.04749556852591	3.70084953215437	4.86513576636305	5.19910569652038	5.11731475694724	4.88117833183586	1.33927606328337	0.000279236976997616	0.00697976093753624
Merged-chr16-33593110-2	chr16	33593010	33593210	+	609.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083902, intron 5 of 11)	T-rich|Low_complexity|Low_complexity	74515.0	NM_001083902	171286.0	Mm.35253	NM_134251	ENSMUSG00000035506	Slc12a8	CCC9|E330020C02Rik	solute carrier family 12 (potassium/chloride transporters), member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-66140342-4	chr7	66140261	66140461	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081163, intron 2 of 2)	L1MC3|LINE|L1	30846.0	NM_001081163	269941.0	Mm.333916	NM_001081163	ENSMUSG00000032640	Chsy1	mKIAA0990	chondroitin sulfate synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-55327865-4	chr13	55327773	55327973	+	995.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016662, intron 4 of 5)	intron (NM_016662, intron 4 of 5)	1857.0	NM_016662	17121.0	Mm.20350	NM_016662	ENSMUSG00000021485	Mxd3	4631412E13Rik|Mad3|bHLHc13	Max dimerization protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-75748126-2	chr7	75748026	75748226	+	730.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 35 of 36)	intron (NM_029332, intron 35 of 36)	-100212.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-109780191-2	chr8	109780091	109780291	+	695.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301211, intron 1 of 22)	intron (NM_001301211, intron 1 of 22)	1608.0	NM_001301211	11765.0	Mm.37210	NM_009677	ENSMUSG00000031731	Ap1g1	AA409002|AU041323|AW551707|Adtg|D8Ertd374e	adaptor protein complex AP-1, gamma 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-29035259-1	chr17	29035159	29035359	+	545.0	f0_balb.idr	intron (NR_036613, intron 1 of 6)	B4|SINE|B4	2599.0	NR_036613	20383.0	Mm.6787	NM_013663	ENSMUSG00000071172	Srsf3	AL024116|Sfrs3|X16	serine/arginine-rich splicing factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-110928354-3	chr13	110928240	110928440	+	733.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24494.0	NR_131194	102636142.0	Mm.417611	NR_131194		4930526H09Rik	-	RIKEN cDNA 4930526H09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-60518634-1	chr3	60518534	60518734	+	685.0	f1_c57bl6.idr	intron (NM_001253711, intron 1 of 7)	intron (NM_001253711, intron 1 of 7)	17455.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	-0.406767114513293	-0.532508749495778	-0.366597041553927	0.0646626600692278	-0.40301667592704	-0.531744737115207	-0.535144975394527	-0.538034450181628	-2.43322249293091	0.323523008592785	1
Merged-chr8-122425159-2	chr8	122425059	122425259	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301284, intron 4 of 4)	B2_Mm2|SINE|B2	3139.0	NM_145834	234836.0	Mm.222808	NM_145834	ENSMUSG00000046108	Il17c	IL-17C	interleukin 17C	protein-coding	-0.2854859358762	-0.273746763520118	-0.277612422333496	0.118252453141472	-0.148712597056504	-0.0880332832838858	-0.276761472481085	0.226509421323246	1.04216715530245	0.655662690353994	1
Merged-chr12-117769282-2	chr12	117769182	117769382	+	759.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74579.0	NM_146040	217946.0	Mm.281149	NM_146040	ENSMUSG00000021175	Cdca7l	BC006933|JPO2	cell division cycle associated 7 like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120319638-4	chr8	120319557	120319757	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-91427.0	NR_110496	434353.0	Mm.411793	NR_110496	ENSMUSG00000097960	A330074K22Rik	-	RIKEN cDNA A330074K22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-85128063-2	chr10	85127963	85128163	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028832)	promoter-TSS (NM_028832)	-36.0	NM_028832	74238.0	Mm.255401	NM_028832	ENSMUSG00000049038	Mterf2	1700007D05Rik|Mterfd3	mitochondrial transcription termination factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-23431126-4	chr18	23431022	23431222	+	886.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361217, intron 1 of 20)	intron (NM_001361217, intron 1 of 20)	15713.0	NM_001361217	13527.0	Mm.94371	NM_010087	ENSMUSG00000024302	Dtna	2210407P21Rik|DTN-A|Dtn|Gm19389|a-DB-1|adbn	dystrobrevin alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-90463135-4	chr6	90463060	90463260	+	873.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355668, intron 1 of 2)	CpG	584.0	NM_023184	66277.0	Mm.38343	NM_023184	ENSMUSG00000030087	Klf15	1810013I09Rik|AV048136|AW494632|CKLF|KKLF	Kruppel-like factor 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-85712767-2	chr11	85712667	85712867	+	792.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045875, intron 1 of 5)	intron (NR_045875, intron 1 of 5)	6977.0	NR_045875	71489.0	Mm.442482	NR_045875	ENSMUSG00000086199	Bcas3os1	8430403D17Rik	breast carcinoma amplified sequence 3, opposite strand 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-60046447-4	chr11	60046336	60046536	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290012)	promoter-TSS (NM_001290012)	53.0	NM_001290012	18618.0	Mm.2731	NM_008819	ENSMUSG00000000301	Pemt	PEAMT|PEMT2|PLMT|Pempt|Pempt2	phosphatidylethanolamine N-methyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128779092-4	chr10	128778997	128779197	+	955.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11813.0	NM_001164197	58223.0	Mm.131266	NM_021412	ENSMUSG00000025355	Mmp19	-	matrix metallopeptidase 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-85839195-2	chr1	85839095	85839295	+	694.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355046, intron 5 of 9)	MTE2b|LTR|ERVL-MaLR	45178.0	NM_001355047	12283.0	Mm.26135	NM_133781	ENSMUSG00000036707	Cab39	AA408805|AA960512|C78372|MO25|MO25alpha	calcium binding protein 39	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55934980-3	chr19	55934776	55934976	+	793.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39555.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-127109607-4	chr6	127109493	127109693	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177003)	promoter-TSS (NM_177003)	-41.0	NM_177003	319801.0	Mm.101836	NM_177003	ENSMUSG00000038028	Tigar	9630033F20Rik|AA793651|AI595337|C79710|C85509	Trp53 induced glycolysis repulatory phosphatase	protein-coding	3.76942121380677	3.92758791564665	4.39576441327807	3.96414125360868	4.11527596277976	3.69896212263049	3.90231858627547	4.304756710562	-0.00273824622378624	0.995102502572101	0.998431161219273
Merged-chr7-81110443-2	chr7	81110343	81110543	+	621.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4356.0	NM_001004184	434203.0	Mm.389909	NM_001004184	ENSMUSG00000025726	Slc28a1	Cnt1	solute carrier family 28 (sodium-coupled nucleoside transporter), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111379636-2	chr12	111379536	111379736	+	706.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1918.0	NM_183016	217866.0	Mm.27397	NM_183016	ENSMUSG00000021279	Cdc42bpb	MRCKb	CDC42 binding protein kinase beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-3498842-2	chr5	3498742	3498942	+	959.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 5 of 7)	intron (NM_009873, intron 5 of 7)	-44991.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-115070433-3	chr8	115070335	115070535	+	697.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019573, intron 8 of 8)	intron (NM_019573, intron 8 of 8)	630783.0	NM_019573	80707.0	Mm.440420	NM_019573	ENSMUSG00000004637	Wwox	5330426P09Rik|9030416C10Rik|WOX1	WW domain-containing oxidoreductase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64039284-2	chr5	64039184	64039384	+	612.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5689.0	NR_045384	74757.0	Mm.159329	NR_045384	ENSMUSG00000106219	5830416I19Rik	-	RIKEN cDNA 5830416I19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-66124246-4	chr9	66124159	66124359	+	928.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019727, intron 1 of 14)	intron (NM_019727, intron 1 of 14)	627.0	NM_019727	56440.0	Mm.271891	NM_019727	ENSMUSG00000032382	Snx1	-	sorting nexin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-53352739-4	chr1	53352636	53352836	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001353501)	promoter-TSS (NM_001353501)	16.0	NM_001290984	70396.0	Mm.285783	NM_133728	ENSMUSG00000026095	Asnsd1	2210409M21Rik	asparagine synthetase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-37073448-3	chr3	37073346	37073546	+	997.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009350, intron 5 of 11)	L1_Mus3|LINE|L1	9790.0	NM_009350	21744.0	Mm.8122	NM_009350	ENSMUSG00000027719	Adad1	Tenr	adenosine deaminase domain containing 1 (testis specific)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-6916740-4	chr10	6916659	6916859	+	941.525024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001170802)	TTS (NM_001170802)	63522.0	NM_001347225	320495.0	Mm.331674	NM_001033391	ENSMUSG00000064065	Ipcef1	A130090K04Rik	interaction protein for cytohesin exchange factors 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-110608700-3	chr11	110608593	110608793	+	567.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	129353.0	NM_001356346	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	-0.313731429908004	0.483779659105342	-0.302429127232182	-0.306659979058437	-0.312675632707195	0.380960841810054	-0.301223526812652	-0.305919323262925	-0.289528934971989	0.910018083021349	1
Merged-chr12-8511732-3	chr12	8511667	8511867	+	769.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER68|LTR|ERVL	-11758.0	NM_007483	11852.0	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	-1.13799161856527	-1.11509962161431	-1.12611682695956	-0.600839935108385	-0.990754861597232	-1.11271214725662	-1.12362277315966	-1.13354676675577	-1.63747442377455	0.616904426498488	1
Merged-chr4-136206280-4	chr4	136206196	136206396	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355698)	promoter-TSS (NM_001355698)	-69.0	NM_001008232	230837.0	Mm.77788	NM_001008232	ENSMUSG00000036995	Asap3	9430088F20Rik|Ddefl1|Gm140|UPLC1	ArfGAP with SH3 domain, ankyrin repeat and PH domain 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-19004975-4	chr2	19004869	19005069	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6650.0	NR_024323	74629.0	Mm.117687	NR_024323	ENSMUSG00000026736	4930426L09Rik	-	RIKEN cDNA 4930426L09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-17895123-2	chr17	17895023	17895223	+	745.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7299.0	NM_008039	14289.0	Mm.378918	NM_008039	ENSMUSG00000052270	Fpr2	E330010I07Rik|Fpr-rs2	formyl peptide receptor 2	protein-coding	1.19672433768968	0.471998711862624	0.460658026635228	0.451770979248213	0.618821485169882	1.43054240910606	1.36195247648564	0.453332499401014	1.54445310099746	0.373606065853385	0.866690947043487
Merged-chr11-106486735-2	chr11	106486635	106486835	+	639.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023913, intron 1 of 21)	intron (NM_023913, intron 1 of 21)	1061.0	NM_023913	78943.0	Mm.340943	NM_023913	ENSMUSG00000020715	Ern1	9030414B18Rik|AI225830|C85377|Ire1a|Ire1alpha|Ire1p	endoplasmic reticulum (ER) to nucleus signalling 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10860327-3	chr19	10860225	10860425	+	914.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_133804, exon 9 of 11)	exon (NM_133804, exon 9 of 11)	9454.0	NM_133804	98170.0	Mm.490254	NM_133804	ENSMUSG00000024736	Tmem132a	6720481D13Rik|Hspa5bp1|Orai1|R74613	transmembrane protein 132A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166068263-2	chr2	166068163	166068363	+	904.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008679, intron 19 of 22)	intron (NM_008679, intron 19 of 22)	75626.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-60045139-2	chr2	60045039	60045239	+	682.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001182, intron 2 of 35)	B2_Mm2|SINE|B2	80601.0	NM_001001182	407823.0	Mm.228071	NM_001001182	ENSMUSG00000026987	Baz2b	5830435C13Rik|BC053917|D2Ertd794e	bromodomain adjacent to zinc finger domain, 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-14239748-4	chr2	14239723	14239923	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008625, intron 2 of 29)	ID_B1|SINE|B4	10409.0	NM_008625	17533.0	Mm.2019	NM_008625	ENSMUSG00000026712	Mrc1	AW259686|CD206|MR	mannose receptor, C type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-47226737-2	chr13	47226639	47226839	+	761.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_146042, intron 3 of 7)	B3A|SINE|B2	32736.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	1.22768785953359	0.665762084244738	0.878930937209496	1.42894115561922	2.11057052606026	0.669152615317962	0.653890783442719	1.03681526334904	0.744671037647318	0.617826459699587	0.977517868708383
Merged-chr1-160982631-1	chr1	160982531	160982731	+	546.0	f1_c57bl6.idr	intron (NM_080844, intron 1 of 7)	intron (NM_080844, intron 1 of 7)	4025.0	NM_080844	11905.0	Mm.260770	NM_080844	ENSMUSG00000026715	Serpinc1	AI114908|ATIII|At-3|At3	serine (or cysteine) peptidase inhibitor, clade C (antithrombin), member 1	protein-coding	-1.27480050717774	-0.604729833679879	-1.25573295904267	-1.26493563944758	-1.27428069156472	-1.24210192204986	-1.25319678955844	-1.26328836405502	-2.6632876257018	0.439827081912762	1
Merged-chr8-84990013-4	chr8	84989902	84990102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001167991)	promoter-TSS (NM_001167991)	-593.0	NM_133255	170833.0	Mm.247775	NM_133255	ENSMUSG00000052566	Hook2	A630054I03Rik	hook microtubule tethering protein 2	protein-coding	4.5351283846637	3.59192226772317	2.41352084140922	4.91921761188072	4.6376797801671	5.08793441566306	4.14590656710659	4.02020469852433	0.466041208697056	0.39306416346493	0.88176613470275
Merged-chr13-54589563-4	chr13	54589437	54589637	+	921.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025933)	promoter-TSS (NM_025933)	537.0	NM_178605	28126.0	Mm.439993	NM_178605	ENSMUSG00000025869	Nop16	AA409471|D13Wsu177e	NOP16 nucleolar protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-84212255-3	chr7	84212126	84212326	+	656.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60333.0	NM_133722	70178.0	Mm.23914	NM_133722	ENSMUSG00000038459	Abhd17c	2210412D01Rik|AL023007|Fam108c|Fam108c1	abhydrolase domain containing 17C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-86263638-2	chr1	86263538	86263738	+	759.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030184, intron 23 of 24)	intron (NM_030184, intron 23 of 24)	-39583.0	NM_145222	227327.0	Mm.86467	NM_145222	ENSMUSG00000079445	B3gnt7	C330001H22Rik|beta-3GnT7	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-114804720-2	chr5	114804620	114804820	+	620.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_026718, exon 15 of 15)	3' UTR (NM_026718, exon 15 of 15)	9256.0	NR_027818	66236.0	Mm.268546	NR_027817	ENSMUSG00000072694	1500011B03Rik	AI415201|AV141149|AW556386	RIKEN cDNA 1500011B03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-84873814-2	chr12	84873714	84873914	+	875.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013589, intron 1 of 34)	intron (NM_013589, intron 1 of 34)	-1988.0	NR_028577	100303738.0	Mm.479389	NR_028577	ENSMUSG00000092130	D030025P21Rik	-	RIKEN cDNA D030025P21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167734513-2	chr2	167734413	167734613	+	710.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43336.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115473514-2	chr5	115473414	115473614	+	894.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_151517, intron 2 of 2)	B2_Mm2|SINE|B2	7372.0	NM_001356587	18778.0	Mm.20190	NM_011107	ENSMUSG00000029522	Pla2g1b	Pla2a|sPLA2IB	phospholipase A2, group IB, pancreas	protein-coding	0.378578986933947	-0.00818353514314965	-0.0118133192381812	0.345490711403513	0.387132614822763	-0.00735905229502323	-0.0110166500587059	0.12490259933837	-0.489122200828329	0.821623633337398	1
Merged-chr11-115191574-2	chr11	115191474	115191674	+	750.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033393, intron 2 of 9)	B4A|SINE|B4	4087.0	NM_001033393	320534.0	Mm.260587	NM_001033393	ENSMUSG00000045980	Tmem104	C630005D06Rik|mFLJ00021	transmembrane protein 104	protein-coding	-1.06749048699405	-1.18409811726534	-1.19455639931541	-1.20314714357788	-0.732344966823593	-1.18183176391733	-1.19218887349829	-1.20160940446224	1.4740915481595	0.659875114534777	1
Merged-chr5-113651173-2	chr5	113651073	113651273	+	582.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008153)	promoter-TSS (NM_008153)	-783.0	NM_008153	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-23519654-3	chr13	23519554	23519754	+	981.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	tRNA-Gln-CAA|tRNA|tRNA	-11390.0	NM_153173	69386.0	Mm.158272	NM_153173	ENSMUSG00000060981	Hist1h4h	1700024H08Rik	histone cluster 1, H4h	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-77607965-4	chr11	77607865	77608065	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144825)	promoter-TSS (NM_144825)	-150.0	NM_144825	216965.0	Mm.340436	NM_144825	ENSMUSG00000017291	Taok1	2810468K05Rik|AU020252|D130018F14Rik|Map3k16|Markk|Psk2|mKIAA1361	TAO kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127386846-3	chr7	127386736	127386936	+	904.8666380000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_030226, exon 1 of 3)	exon (NM_030226, exon 1 of 3)	330.0	NM_030226	78921.0	Mm.200950	NM_030226	ENSMUSG00000030823	9130019O22Rik	-	RIKEN cDNA 9130019O22 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-13733804-3	chr16	13733688	13733888	+	820.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040574, intron 1 of 2)	intron (NR_040574, intron 1 of 2)	-3304.0	NM_011987	26565.0	Mm.4214	NM_011987	ENSMUSG00000022683	Pla2g10	GX sPLA2|PLA2GX|sPLA2-X	phospholipase A2, group X	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-23696317-3	chr13	23696170	23696370	+	793.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010377, exon 1 of 1)	exon (NM_010377, exon 1 of 1)	459.0	NM_010377	107970.0	Mm.8048	NM_010377	ENSMUSG00000036211	Hist1h1t	H1.6|H1ft|H1t	histone cluster 1, H1t	protein-coding	2.606165298893	3.53623239061531	3.34112375380815	3.32701351461164	2.36534786787367	3.77792334938774	3.28085400123834	2.88528195054696	-0.113003352651938	0.861292734777257	0.998431161219273
Merged-chr11-6629915-2	chr11	6629815	6630015	+	851.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3848.0	NM_134011	21379.0	Mm.247761	NM_134011	ENSMUSG00000000384	Tbrg4	2310042P22Rik|AA120735|AA408001|AI527316|Cpr2|R74877|Tb-12|mKIAA0948	transforming growth factor beta regulated gene 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-113054513-2	chr5	113054418	113054618	+	716.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15599.0	NM_007773	12961.0	Mm.1215	NM_007773	ENSMUSG00000042240	Crybb2	Cryb-2	crystallin, beta B2	protein-coding	3.200949015688	1.58664794565511	2.21700992124233	2.47124540268806	2.16726822867281	1.59732128663002	2.0985535254591	1.71000290524166	-1.38112664210704	0.138118494997127	0.579962331885977
Merged-chr16-91411967-2	chr16	91411867	91412067	+	673.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008349, exon 3 of 7)	exon (NM_008349, exon 3 of 7)	5732.0	NM_008349	16155.0	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44319292-2	chr9	44319192	44319392	+	977.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359259, intron 1 of 13)	intron (NM_001359259, intron 1 of 13)	990.0	NM_001359259	71764.0	Mm.491174	NM_027909	ENSMUSG00000032120	C2cd2l	1300006O23Rik|Tmem24	C2 calcium-dependent domain containing 2-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-140175673-4	chr1	140175585	140175785	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009888, intron 1 of 21)	intron (NM_009888, intron 1 of 21)	7726.0	NM_009888	12628.0	Mm.8655	NM_009888	ENSMUSG00000026365	Cfh	Mud-1|NOM|Sas-1|Sas1	complement component factor h	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-126436261-2	chr4	126436161	126436361	+	821.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001317173, exon 19 of 19)	3' UTR (NM_001317173, exon 19 of 19)	-6719.0	NM_153402	214150.0	Mm.440915	NM_153402	ENSMUSG00000028842	Ago3	AW048688|C130014L07Rik|Eif2c3	argonaute RISC catalytic subunit 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70969417-2	chr11	70969317	70969517	+	980.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252413)	promoter-TSS (NM_001252413)	556.0	NM_172394	19069.0	Mm.288962	NM_172394	ENSMUSG00000040667	Nup88	Nup84|Prei2	nucleoporin 88	protein-coding	-0.0360105944546917	-0.285624771924929	0.0321886652056007	0.41516404076473	-0.29794751969562	-0.284651893588501	-0.288986243061228	-0.292678932868034	-3.66234703590229	0.124720446515912	1
Merged-chr1-165646578-3	chr1	165646486	165646686	+	956.7777710000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-12045.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100474844-4	chr7	100474721	100474921	+	822.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009464, intron 1 of 6)	intron (NM_009464, intron 1 of 6)	1830.0	NM_009464	22229.0	Mm.6254	NM_009464	ENSMUSG00000032942	Ucp3	AI645527|Slc25a9|UCP-3	uncoupling protein 3 (mitochondrial, proton carrier)	protein-coding	0.366789112882272	0.236039806832243	0.228761952226563	0.885568324052903	0.621386795928819	0.237674816346489	1.04111406223803	0.224106104353061	0.675294219630073	0.726756476011713	1
Merged-chr7-28693673-4	chr7	28693598	28693798	+	976.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207238, intron 2 of 5)	intron (NM_207238, intron 2 of 5)	554.0	NM_001163702	233040.0	Mm.116116	NM_207238	ENSMUSG00000037463	Fbxo27	E130008B10Rik|FBG5|Gm161	F-box protein 27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-52956658-4	chr18	52956559	52956759	+	854.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	188515.0	NM_001199154	67847.0	Mm.292168	NM_026408	ENSMUSG00000024534	Sncaip	2810407O15Rik|4933427B05Rik|BB104594|SYPH1	synuclein, alpha interacting protein (synphilin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69583177-2	chr11	69583077	69583277	+	726.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001127233, intron 1 of 10)	B1_Mur4|SINE|Alu	2818.0	NM_001127233	22059.0	Mm.222	NM_011640	ENSMUSG00000059552	Trp53	Tp53|bbl|bfy|bhy|p44|p53	transformation related protein 53	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-52496053-2	chr2	52495953	52496153	+	545.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037099, intron 2 of 13)	intron (NM_001037099, intron 2 of 13)	62558.0	NM_146123	12298.0	Mm.330223	NM_146123	ENSMUSG00000017412	Cacnb4	3110038O15Rik|Cchb4|lh	calcium channel, voltage-dependent, beta 4 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-57796068-4	chr6	57795958	57796158	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146168, intron 1 of 4)	intron (NM_146168, intron 1 of 4)	29067.0	NM_146168	232023.0	Mm.24642	NM_146168	ENSMUSG00000037788	Vopp1	AW146242|Ecop	vesicular, overexpressed in cancer, prosurvival protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-134127781-1	chr4	134127681	134127881	+	1000.0	f1_c57bl6.idr	exon (NM_080559, exon 3 of 3)	exon (NM_080559, exon 3 of 3)	972.0	NM_080559	73723.0	Mm.22240	NM_080559	ENSMUSG00000028843	Sh3bgrl3	1110004L05Rik|AU022188	SH3 domain binding glutamic acid-rich protein-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-135659251-3	chr1	135659152	135659352	+	913.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60811.0	NM_001360782	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-58741448-2	chr1	58741348	58741548	+	802.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355056, intron 7 of 8)	MLT1J2|LTR|ERVL-MaLR	10896.0	NM_001293805	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166204366-4	chr2	166204283	166204483	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48700.0	NM_028072	72043.0	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35980364-1	chr17	35980264	35980464	+	1000.0	f0_balb.idr	promoter-TSS (NM_001165892)	promoter-TSS (NM_001165892)	409.0	NM_008136	14670.0	Mm.335754	NM_008136	ENSMUSG00000024429	Gnl1	Gna-rs1|Gnal1	guanine nucleotide binding protein-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-63614345-4	chr15	63614299	63614499	+	816.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-134791.0	NR_045279	432958.0	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	1.81146354712559	1.32925191979571	1.29012306302695	3.07082370542077	2.59785432721758	2.06297094540889	2.73743975828702	2.95899193580683	1.02267657684596	0.301173776650234	0.802503830838662
Merged-chr5-114771701-2	chr5	114771601	114771801	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077359, intron 1 of 18)	intron (NM_001077359, intron 1 of 18)	1790.0	NM_019834	26431.0	Mm.195632	NM_019834	ENSMUSG00000041890	Git2	1500036H07Rik|5830420E16Rik|6430510B20Rik|9630056M03Rik|B230104M05Rik|CAT2|mKIAA0148	G protein-coupled receptor kinase-interactor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-31340133-4	chr6	31340034	31340234	+	851.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58639.0	NR_040300	100503869.0	Mm.370532	NR_040300	ENSMUSG00000086212	Mkln1os	Gm13845	muskelin 1, intracellular mediator containing kelch motifs, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-12836667-3	chr10	12836563	12836763	+	922.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011682, intron 1 of 73)	intron (NM_011682, intron 1 of 73)	25072.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127645829-2	chr10	127645741	127645941	+	638.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009284, intron 1 of 21)	MER44B|DNA|TcMar-Tigger	2855.0	NM_009284	20852.0	Mm.121721	NM_009284	ENSMUSG00000002147	Stat6	-	signal transducer and activator of transcription 6	protein-coding	-1.17715223093462	-1.15373687878168	-0.853634787400156	-1.01384133003273	-1.17672386532297	-1.15147051572192	-1.16182766968501	-1.01129748999299	-1.31166019844331	0.670230996551482	1
Merged-chr11-117108851-2	chr11	117108751	117108951	+	724.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6321.0	NR_029459	74136.0	Mm.272312	NM_028777	ENSMUSG00000020823	Sec14l1	1200017E04Rik|2810012L19Rik|Naa-35	SEC14-like lipid binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-138582467-3	chr1	138582368	138582568	+	683.866699	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021605, intron 1 of 9)	LTR16A|LTR|ERVL	37289.0	NM_021605	59125.0	Mm.143817	NM_021605	ENSMUSG00000026393	Nek7	2810460C19Rik|AU020186	NIMA (never in mitosis gene a)-related expressed kinase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-106328908-4	chr4	106328810	106329010	+	964.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183225, intron 1 of 67)	MTEb|LTR|ERVL-MaLR	12697.0	NM_183225	329908.0	Mm.234544	NM_183225	ENSMUSG00000028514	Usp24	2700066K03Rik|2810030C21Rik|AI414051|B130021E18|C79851	ubiquitin specific peptidase 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-92766449-2	chr7	92766349	92766549	+	635.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_029494, intron 1 of 4)	intron (NM_029494, intron 1 of 4)	24735.0	NM_029494	75985.0	Mm.323004	NM_029494	ENSMUSG00000030643	Rab30	5033421K01Rik|AI323892|Rsb30	RAB30, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-84334027-4	chr3	84333957	84334157	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A0|LTR|ERVL-MaLR	-29282.0	NM_001271726	80890.0	Mm.44876	NM_030706	ENSMUSG00000027993	Trim2	mKIAA0517|narf	tripartite motif-containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-34690988-4	chr6	34690895	34691095	+	829.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347100, intron 3 of 13)	intron (NM_001347100, intron 3 of 13)	-18449.0	NM_145575	109624.0	Mm.308134	NM_145575	ENSMUSG00000029761	Cald1	4833423D12Rik|AI195384|AV071549|AW536160|C920027I18Rik	caldesmon 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101904225-2	chr7	101904125	101904325	+	860.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001282088)	promoter-TSS (NM_001282088)	-440.0	NM_001282088	791260.0	Mm.475469	NM_001081679	ENSMUSG00000078630	Tomt	Comt2|F930017I19Rik	transmembrane O-methyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91486645-2	chr2	91486545	91486745	+	787.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172668, intron 18 of 37)	B3A|SINE|B2	29114.0	NM_001145857	228357.0	Mm.275149	NM_172668	ENSMUSG00000027253	Lrp4	6430526J12Rik|D230026E03|Megf7|mdig	low density lipoprotein receptor-related protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97273425-1	chr6	97273325	97273525	+	918.0	f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-20645.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	0.655285116558605	0.510745232531096	1.59671872289344	0.4880556899788	1.17841548085216	0.513572201022573	1.52570368943144	0.489812912868961	0.351045422017541	0.836287301165971	0.998431161219273
Merged-chr5-129727067-2	chr5	129726967	129727167	+	803.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008095, intron 1 of 9)	intron (NM_008095, intron 1 of 9)	1992.0	NM_008095	14467.0	Mm.12468	NM_008095	ENSMUSG00000029432	Nipsnap2	AV006093|Gbas	nipsnap homolog 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-24642658-3	chr7	24642560	24642760	+	646.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	6090.0	NM_133743	72434.0	Mm.281093	NM_133743	ENSMUSG00000057454	Lypd3	2310061G07Rik|C4.4a	Ly6/Plaur domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-59355771-2	chr2	59355671	59355871	+	555.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_026361)	TTS (NM_026361)	30911.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-73178275-2	chr14	73178175	73178375	+	609.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_134083, intron 13 of 14)	intron (NM_134083, intron 13 of 14)	28576.0	NR_030459	751541.0		NR_030459	ENSMUSG00000076121	Mir687	Mirn687|mir-687|mmu-mir-687	microRNA 687	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32709929-2	chr2	32709829	32710029	+	574.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_130860, exon 5 of 7)	exon (NM_130860, exon 5 of 7)	2855.0	NM_130860	107951.0	Mm.27557	NM_130860	ENSMUSG00000009555	Cdk9	PITALRE	cyclin-dependent kinase 9 (CDC2-related kinase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-23114649-4	chr19	23114550	23114750	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26576.0	NM_010638	16601.0	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|Gm9971	Kruppel-like factor 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117062817-2	chr11	117062717	117062917	+	981.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13966.0	NR_027059	76972.0	Mm.309167	NR_027059	ENSMUSG00000086859	Snhg20	2810008D09Rik	small nucleolar RNA host gene 20	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-5974385-2	chr11	5974285	5974485	+	592.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001174054, intron 17 of 20)	intron (NM_001174054, intron 17 of 20)	18627.0	NM_019661	56418.0	Mm.294821	NM_019661	ENSMUSG00000002741	Ykt6	0610042I15Rik|1810013M05Rik|AW105923	YKT6 v-SNARE homolog (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-67049411-2	chr9	67049311	67049511	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164249)	promoter-TSS (NM_001164249)	-198.0	NM_001164251	22003.0	Mm.121878	NM_024427	ENSMUSG00000032366	Tpm1	AA986836|AI854628|TM2|TPM1kappa|Tm3|Tmpa|Tpm-1|alpha-TM	tropomyosin 1, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-8741699-2	chr10	8741599	8741799	+	774.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 13 of 19)	intron (NM_175155, intron 13 of 19)	144371.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	1.54227451478113	0.711677447447111	0.681315588410915	0.445081591654145	0.430382985363759	1.66871997332431	0.458121086934907	0.661561202406128	0.0282522632703599	0.986284345228005	0.998431161219273
Merged-chr8-95137932-3	chr8	95137845	95138045	+	936.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010631, exon 2 of 20)	exon (NM_010631, exon 2 of 20)	4595.0	NM_010631	16582.0	Mm.378951	NM_010631	ENSMUSG00000031788	Kifc3	AI325457|BB123200	kinesin family member C3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-143916710-4	chr1	143916607	143916807	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	87442.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-59823712-4	chr4	59823610	59823810	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172468, intron 1 of 8)	intron (NM_172468, intron 1 of 8)	18060.0	NM_172468	209131.0	Mm.259705	NM_172468	ENSMUSG00000028385	Snx30	4732481H14Rik|C030041J06Rik	sorting nexin family member 30	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-56197678-4	chr13	56197585	56197785	+	984.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18800.0	NM_001168615	212937.0	Mm.116697	NM_145976	ENSMUSG00000049625	Tifab	-	TRAF-interacting protein with forkhead-associated domain, family member B	protein-coding	-1.84362945061595	-1.81329140012928	-1.67810947190254	-1.83000206547234	-1.84149977556685	-1.81130325271815	-1.67603257143677	-1.82865309133977	0.037684011990387	0.991491645451152	1
Merged-chr1-172369781-2	chr1	172369673	172369873	+	702.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_001039484, exon 2 of 2)	exon (NM_001039484, exon 2 of 2)	-6758.0	NM_026234	67556.0	Mm.26612	NM_026234	ENSMUSG00000050229	Pigm	4933437L05Rik|AI644422|AV302080|C920011G20Rik	phosphatidylinositol glycan anchor biosynthesis, class M	protein-coding	0.432960431965971	0.487913573408573	0.726784265606844	0.456796619628398	1.53761813273256	0.992690639828689	2.17078546122113	0.45923598966978	4.33502957494817	0.00888060062276349	0.100140457022478
Merged-chr6-83041297-1	chr6	83041197	83041397	+	568.0	f1_c57bl6.idr	intron (NM_013586, intron 4 of 13)	PB1D10|SINE|Alu	7073.0	NM_013586	16950.0	Mm.380433	NM_013586	ENSMUSG00000000693	Loxl3	Lor2|Loxl2	lysyl oxidase-like 3	protein-coding	0.286509252103677	0.972837886854109	0.072482131582683	-0.138038788758039	-0.145619872885432	-0.124388340799367	-0.131220439402271	-0.137108064605643	-4.11194016173071	0.0584971974797999	1
Merged-chr19-7017832-4	chr19	7017696	7017896	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362399, intron 2 of 14)	intron (NM_001362399, intron 2 of 14)	1673.0	NM_153795	108101.0	Mm.157591	NM_153795	ENSMUSG00000024965	Fermt3	C79673|Kindlin3	fermitin family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-16987541-1	chr11	16987441	16987641	+	632.0	f0_balb.idr	exon (NM_019549, exon 6 of 10)	exon (NM_019549, exon 6 of 10)	21177.0	NM_019549	56193.0	Mm.98232	NM_019549	ENSMUSG00000020120	Plek	2010300B13Rik	pleckstrin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-131237928-4	chr3	131237843	131238043	+	793.979187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008212, intron 6 of 7)	intron (NM_008212, intron 6 of 7)	34158.0	NM_008212	15107.0	Mm.260164	NM_008212	ENSMUSG00000027984	Hadh	AA409008|AU019341|AW742602|HCDH|Hadhsc|Schad	hydroxyacyl-Coenzyme A dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-49855477-4	chr16	49855385	49855585	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010581)	promoter-TSS (NM_010581)	-169.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-174434339-2	chr1	174434248	174434448	+	791.5	f0_balb.idr|f1_balb.idr	Intergenic	RLTR22_Mur|LTR|ERVK	3918.0	NM_146761	258756.0	Mm.223188	NM_146761	ENSMUSG00000051509	Olfr414	MOR103-10	olfactory receptor 414	protein-coding	1.374254803392	1.99467569021789	1.214598652281	1.4529025977804	2.38586600885236	2.4712703769682	2.95184766299395	3.32890551891068	3.2007311582936	0.00101004232211907	0.0197206335444386
Merged-chr5-115553163-2	chr5	115553102	115553302	+	733.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011223, intron 10 of 10)	intron (NM_011223, intron 10 of 10)	-6265.0	NM_007475	11837.0	Mm.5286	NM_007475	ENSMUSG00000067274	Rplp0	36B4|Arbp|L10E	ribosomal protein, large, P0	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-49986397-3	chr11	49986302	49986502	+	716.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-38929.0	NM_021540	59044.0	Mm.359004	NM_021540	ENSMUSG00000020376	Rnf130	2510042A13Rik|G1RZFP|G1rp|GOLIATH|GP	ring finger protein 130	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-68145010-3	chr7	68144911	68145111	+	890.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010513, intron 2 of 20)	intron (NM_010513, intron 2 of 20)	119222.0	NM_030101	78444.0	Mm.425468	NM_030101	ENSMUSG00000030553	Pgpep1l	C330024D12Rik	pyroglutamyl-peptidase I-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-94246150-4	chr16	94246038	94246238	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360045, intron 5 of 10)	ORR1D2|LTR|ERVL-MaLR	44153.0	NM_001360045	110948.0	Mm.30921	NM_139145	ENSMUSG00000040820	Hlcs	410I21.SP6|D16Jhu34	holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33158588-4	chr16	33158473	33158673	+	916.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26498.0	NM_176840	106326.0	Mm.486405	NM_176840	ENSMUSG00000022807	Osbpl11	9430097N02Rik|AI132306|AU019795|ORP-11	oxysterol binding protein-like 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-80993548-2	chr3	80993448	80993648	+	571.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3A|LINE|L1	-42868.0	NM_019971	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-68239241-1	chr10	68239141	68239341	+	1000.0	f0_balb.idr	intron (NM_023598, intron 3 of 9)	intron (NM_023598, intron 3 of 9)	39485.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	3.40652627518222	3.96867919507003	2.32649361185071	3.92189637381384	3.96784100870849	4.45657383606946	3.72403111542437	3.53245851997078	0.59759480999208	0.283865237928577	0.787168364715038
Merged-chr12-100090256-2	chr12	100090156	100090356	+	671.56665	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A2|LTR|ERVL-MaLR	-22075.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-149621585-2	chr4	149621477	149621677	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290989, intron 2 of 17)	intron (NM_001290989, intron 2 of 17)	33990.0	NR_105990	102465983.0		NR_105990	ENSMUSG00000098580	Mir7023	Gm27912|mmu-mir-7023	microRNA 7023	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-114815106-2	chr9	114815006	114815206	+	558.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027294, intron 1 of 3)	B4A|SINE|B4	29046.0	NM_027294	70031.0	Mm.150064	NM_027294	ENSMUSG00000041012	Cmtm8	2700018N07Rik|AA408515|Cklfsf8	CKLF-like MARVEL transmembrane domain containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-111809530-8	chr13	111809413	111809613	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011945)	promoter-TSS (NM_011945)	-520.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	4.2678695987114	3.45579568059756	4.69354709873216	3.23571061674211	4.18399810954475	2.81768714750601	3.55195654129422	2.90951578355095	-0.780211555391813	0.183087474147713	0.657952330718128
Merged-chr8-10899023-2	chr8	10898923	10899123	+	625.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_102285)	promoter-TSS (NR_102285)	-899.0	NR_102285	71624.0	Mm.139075	NR_102285	ENSMUSG00000109089	4833411C07Rik	-	RIKEN cDNA 4833411C07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-9936748-4	chr19	9936639	9936839	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37206.0	NM_016692	16319.0	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	3.72494707334617	2.86509925493066	4.61326322330676	3.39527873027723	3.8142404432684	4.12598520666371	4.11963477327526	4.16413400866855	0.340793980003232	0.51113703138955	0.94512318675548
Merged-chr1-74432426-2	chr1	74432326	74432526	+	787.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_009509, exon 19 of 20)	exon (NM_009509, exon 19 of 20)	23042.0	NM_009509	22349.0	Mm.471601	NM_009509	ENSMUSG00000026175	Vil1	Vil	villin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140847378-3	chr5	140847265	140847465	+	717.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16934.0	NM_010302	14673.0	Mm.370185	NM_010302	ENSMUSG00000000149	Gna12	AI414047|AI504261|Galpha12	guanine nucleotide binding protein, alpha 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33591898-4	chr16	33591809	33592009	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083902, intron 5 of 11)	intron (NM_001083902, intron 5 of 11)	73314.0	NM_001083902	171286.0	Mm.35253	NM_134251	ENSMUSG00000035506	Slc12a8	CCC9|E330020C02Rik	solute carrier family 12 (potassium/chloride transporters), member 8	protein-coding	1.93254860857179	1.44813718204081	1.98800699631194	1.82155487247544	1.94810503885237	1.45596513857468	2.00329319104504	1.83038071651807	0.037973884007888	0.969908810781394	0.998431161219273
Merged-chr13-92334703-1	chr13	92334603	92334803	+	671.0	f0_balb.idr	intron (NM_001311120, intron 8 of 23)	intron (NM_001311120, intron 8 of 23)	-20080.0	NM_010049	13361.0	Mm.23695	NM_010049	ENSMUSG00000021707	Dhfr	8430436I03Rik|AA607882|AI662710|AW555094	dihydrofolate reductase	protein-coding	-0.792998761647641	-0.777505919786429	-0.782432012239085	-0.786329388588684	-0.791990200531773	-0.776365404355073	0.250891359300201	-0.785642225977318	4.16170718474364	0.108167267363163	1
Merged-chr4-53108006-2	chr4	53107906	53108106	+	609.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 6 of 49)	intron (NM_013454, intron 6 of 49)	51889.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-138942484-1	chr6	138942384	138942584	+	638.0	f1_c57bl6.idr	Intergenic	Lx4B|LINE|L1	-284040.0	NM_015777	50540.0	Mm.84043	NM_015777	ENSMUSG00000046717	Igbp1b	alpha4-b	immunoglobulin (CD79A) binding protein 1b	protein-coding	-1.03787445423696	-0.828439209269094	-1.02990738401325	-1.03419657188337	-1.0373273429507	-1.01525942842684	-0.433779522879223	-1.033809545283	1.85081744078225	0.55532032367009	1
Merged-chr5-149006885-4	chr5	149006794	149006994	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040429)	promoter-TSS (NR_040429)	-68.0	NR_040429	100503307.0	Mm.188008	NR_040429	ENSMUSG00000086610	Gm15408	-	predicted gene 15408	ncRNA	1.36207370516241	0.840014924718049	1.49103544614436	0.813918465146132	1.80740272965334	1.56368900375032	1.5043191546146	0.815936797628279	1.15084429842581	0.412464822807284	0.894783826796838
Merged-chr11-100625671-2	chr11	100625571	100625771	+	854.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_177790)	TTS (NM_177790)	2716.0	NM_028024	71966.0	Mm.274734	NM_028024	ENSMUSG00000017837	Nkiras2	2410003M04Rik|4930527H08Rik|D630018G21Rik|KBRAS2	NFKB inhibitor interacting Ras-like protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-26934829-1	chr2	26934729	26934929	+	545.0	f1_c57bl6.idr	intron (NM_198628, intron 1 of 18)	intron (NM_198628, intron 1 of 18)	760.0	NM_198628	279029.0	Mm.330079	NM_198628	ENSMUSG00000049897	Stkld1	Gm711|Sgk071	serine/threonine kinase-like domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124829099-4	chr6	124829018	124829218	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013700, intron 1 of 19)	intron (NM_013700, intron 1 of 19)	366.0	NM_001326594	22225.0	Mm.3571	NM_013700	ENSMUSG00000038429	Usp5	AA407472|ISOT|ISOT-1|Ucht	ubiquitin specific peptidase 5 (isopeptidase T)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-95800309-4	chr15	95800196	95800396	+	899.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 1 of 19)	Lx8|LINE|L1	9453.0	NM_001253813	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-87717457-4	chr16	87717341	87717541	+	823.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007520, intron 2 of 4)	L1MD2|LINE|L1	18487.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-108345520-2	chr3	108345420	108345620	+	695.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_019972, intron 12 of 19)	intron (NM_019972, intron 12 of 19)	-19391.0	NM_026831	68753.0	Mm.75201	NM_026831	ENSMUSG00000068745	Mybphl	1110037P11Rik	myosin binding protein H-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35162646-2	chr17	35162546	35162746	+	669.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199044, intron 2 of 30)	intron (NM_001199044, intron 2 of 30)	2231.0	NM_001199044	53761.0	Mm.272462	NM_020027	ENSMUSG00000024393	Prrc2a	3110039B05Rik|Bat-2|Bat2|D17H6S51E|G2|Wbp12|mKIAA4178	proline-rich coiled-coil 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-56479643-3	chr18	56479607	56479807	+	712.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360917, intron 5 of 13)	intron (NM_001360917, intron 5 of 13)	47575.0	NM_026240	107022.0	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|Gramd2b|NS3TP2	GRAM domain containing 3	protein-coding	3.45133093669428	2.83446202301177	2.98720611862999	2.65703003587234	3.21552358538511	3.51071078323382	3.21971539042642	3.86426171179283	0.747636198143871	0.210265579196941	0.69949048545273
Merged-chr5-62152177-2	chr5	62152077	62152277	+	720.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3C|LINE|L1	343334.0	NM_019468	14380.0	Mm.347430	NM_019468	ENSMUSG00000089992	G6pd2	G6pdx-ps1|Gpd-2|Gpd2	glucose-6-phosphate dehydrogenase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117308462-4	chr8	117308346	117308546	+	968.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	-40724.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-80408728-4	chr1	80408624	80408824	+	871.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37208.0	NR_040460	72208.0	Mm.396181	NR_040460	ENSMUSG00000101483	1700016L21Rik	CD11c-DTR|DCKO|DTR-GFP|DTR-GRP|Jr3|Tg(Itgax-DTR/EGFP)57Lan	RIKEN cDNA 1700016L21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-164950445-2	chr2	164950339	164950539	+	860.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_013599, exon 6 of 13)	exon (NM_013599, exon 6 of 13)	2220.0	NM_013599	17395.0	Mm.4406	NM_013599	ENSMUSG00000017737	Mmp9	AW743869|B/MMP9|Clg4b|Gel B|MMP-9|pro-MMP-9	matrix metallopeptidase 9	protein-coding	1.0312886173997	0.432483551249135	0.422929798003892	0.60186888185151	1.13284002058401	0.434622319404992	0.425046359711967	1.38713887363527	1.32512510409784	0.457476051756155	1
Merged-chr17-70845080-2	chr17	70844980	70845180	+	799.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_009372, exon 3 of 3)	exon (NM_009372, exon 3 of 3)	1697.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-12232691-2	chr4	12232591	12232791	+	563.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	IMPB_01|Satellite|Satellite	-60676.0	NM_026558	68099.0	Mm.25340	NM_026558	ENSMUSG00000028218	Fam92a	6720467C03Rik|Fam92a1	family with sequence similarity 92, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-79438438-4	chr3	79438354	79438554	+	958.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142953, intron 3 of 4)	intron (NM_001142953, intron 3 of 4)	93078.0	NM_001142953	100233207.0	Mm.373801	NM_001142953	ENSMUSG00000091685	Gm17359	-	predicted gene, 17359	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-65453670-3	chr6	65453562	65453762	+	710.861084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175524, intron 4 of 5)	intron (NM_175524, intron 4 of 5)	72368.0	NM_175524	243407.0	Mm.389758	NM_175524	ENSMUSG00000029917	C130060K24Rik	-	RIKEN cDNA C130060K24 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-75504958-4	chr10	75504841	75505041	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	HERVL40-int|LTR|ERVL	12440.0	NM_175133	68778.0	Mm.29382	NM_175133	ENSMUSG00000033416	Gucd1	1110038D17Rik	guanylyl cyclase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-57335872-4	chr17	57335782	57335982	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22804.0	NM_001355723	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44133408-2	chr9	44133308	44133508	+	733.166626	f1_balb.idr|f1_c57bl6.idr	intron (NR_152189, intron 1 of 1)	intron (NR_152189, intron 1 of 1)	1077.0	NR_152189	100038560.0	Mm.429758	NR_152189		Gm10687	-	predicted gene 10687	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-37109543-4	chr14	37109419	37109619	+	980.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001206684, intron 1 of 2)	intron (NM_001206684, intron 1 of 2)	582.0	NM_001206684	70045.0	Mm.271619	NM_001206684	ENSMUSG00000096001	2610528A11Rik	AW494830|Gpr15l	RIKEN cDNA 2610528A11 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-84716483-2	chr2	84716383	84716583	+	919.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1319.0	NM_144887	228136.0	Mm.288508	NM_144887	ENSMUSG00000034075	Zdhhc5	1110032A17Rik|AI451382|Zisp	zinc finger, DHHC domain containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-20771360-1	chr10	20771260	20771460	+	542.0	f1_balb.idr	Intergenic	MLT2F|LTR|ERVL	-46282.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	1.52253959890782	1.61270693249627	1.96156236633518	0.844685234530386	0.825728666538195	1.62633088703505	0.861474804691434	1.51063086723779	-0.988831095487136	0.473233615443784	0.926125823511231
Merged-chr15-101221075-2	chr15	101220995	101221195	+	894.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045996)	promoter-TSS (NR_045996)	-152.0	NR_045996	105968.0	Mm.120798	NR_045996	ENSMUSG00000115944	AU021063	-	expressed sequence AU021063	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34335356-4	chr17	34335266	34335466	+	881.2291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033978, intron 3 of 4)	intron (NM_001033978, intron 3 of 4)	9279.0	NM_010381	100504404.0	Mm.15680	NM_010381		H2-Ea-ps	AI323765|E-alpha-f|H-2Ea|H2-Ea|I-Ealpha|Ia-3|Ia3|MHC-H2-Ea	histocompatibility 2, class II antigen E alpha, pseudogene	protein-coding	4.79399429015284	2.98117972356335	4.61262630281455	5.24307998122516	4.91746717368941	4.79151181364249	3.65194278947885	4.6030722295427	-0.0741086626740897	0.878662475032397	0.998431161219273
Merged-chr14-114947977-1	chr14	114947877	114948077	+	542.0	f1_c57bl6.idr	Intergenic	Intergenic	-2029.0	NR_126548	74982.0		NR_126548	ENSMUSG00000115372	1700100I10Rik	1700085D13Rik|4930481K08Rik	RIKEN cDNA 1700100I10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47505056-4	chr17	47504880	47505080	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081636)	promoter-TSS (NM_001081636)	-71.0	NM_001081636	12445.0	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-53835801-2	chr11	53835701	53835901	+	687.799988	f1_balb.idr|f1_c57bl6.idr	intron (NR_033332, intron 2 of 3)	intron (NR_033332, intron 2 of 3)	23455.0	NR_033332	622459.0	Mm.479656	NR_033332	ENSMUSG00000081769	Gm12216	602-19-115	predicted gene 12216	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-11766702-4	chr2	11766601	11766801	+	996.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001348235, intron 3 of 20)	intron (NM_001348235, intron 3 of 20)	10884.0	NM_001348234	50755.0	Mm.24088	NM_015792	ENSMUSG00000058594	Fbxo18	AU015756|Fbh1|Fbx18	F-box protein 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-62407959-4	chr4	62407850	62408050	+	979.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027297)	promoter-TSS (NM_027297)	673.0	NM_139291	66440.0	Mm.109930	NM_139291	ENSMUSG00000066149	Cdc26	2010012C09Rik	cell division cycle 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98546001-3	chr11	98545908	98546108	+	648.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011771)	promoter-TSS (NM_011771)	23.0	NM_011771	22780.0	Mm.133367	NM_011771	ENSMUSG00000018168	Ikzf3	5830411O07Rik|Aiolos|Zfpn1a3|Znfn1a3	IKAROS family zinc finger 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-83767103-4	chr2	83766970	83767170	+	908.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008402, intron 8 of 29)	intron (NM_008402, intron 8 of 29)	42673.0	NM_008402	16410.0	Mm.227	NM_008402	ENSMUSG00000027087	Itgav	1110004F14Rik|2610028E01Rik|CD51|D430040G12Rik	integrin alpha V	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-66213011-3	chr9	66212904	66213104	+	954.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010019, intron 2 of 11)	intron (NM_010019, intron 2 of 11)	54778.0	NM_010019	13143.0	Mm.304472	NM_010019	ENSMUSG00000032380	Dapk2	-	death-associated protein kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-102698366-2	chr15	102698266	102698466	+	597.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23812.0	NM_026192	67488.0	Mm.71682	NM_026192	ENSMUSG00000023055	Calcoco1	1810009B06Rik|Cocoa|Gcap11|mKIAA1536	calcium binding and coiled coil domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-117979336-3	chr3	117979236	117979436	+	763.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-110400.0	NM_029655	76561.0	Mm.33824	NM_029655	ENSMUSG00000028007	Snx7	2510028H01Rik	sorting nexin 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-152782225-4	chr3	152782132	152782332	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025662, intron 10 of 10)	intron (NM_025662, intron 10 of 10)	68132.0	NM_025662	329777.0	Mm.331447	NM_025662	ENSMUSG00000039047	Pigk	3000001O05Rik|Gm38470|PIG-K	phosphatidylinositol glycan anchor biosynthesis, class K	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-117537192-1	chr4	117537092	117537292	+	635.0	f0_balb.idr	Intergenic	Intergenic	-13132.0	NM_001356404	140546.0	Mm.235891	NM_080469	ENSMUSG00000033423	Eri3	PINT1|Prnpip1	exoribonuclease 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126776883-4	chr7	126776785	126776985	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026875)	promoter-TSS (NM_026875)	-90.0	NM_026875	66090.0	Mm.27114	NM_025347	ENSMUSG00000042675	Ypel3	0610043B10Rik|1190001G19Rik|Suap	yippee like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-17761912-2	chr12	17761812	17762012	+	550.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016677, intron 1 of 3)	intron (NM_016677, intron 1 of 3)	71103.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131146510-4	chr1	131146413	131146613	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MYSERV6-int|LTR|ERVK	-6694.0	NM_001136070	16865.0	Mm.276294	NM_010709	ENSMUSG00000026427	Eif2d	D1Ertd5e|Lgtn	eukaryotic translation initiation factor 2D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-30397866-2	chr16	30397752	30397952	+	795.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9322.0	NM_001128096	224088.0	Mm.8924	NM_001128094	ENSMUSG00000022533	Atp13a3	AU022875|Gm1745|Gm541|Gm542	ATPase type 13A3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-122903897-2	chr4	122903797	122903997	+	631.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17821.0	NM_001358036	12331.0	Mm.8687	NM_007598	ENSMUSG00000028656	Cap1	-	CAP, adenylate cyclase-associated protein 1 (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-36173217-2	chr8	36173100	36173300	+	804.375	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	17190.0	NR_151736	330738.0	Mm.128075	NR_151736	ENSMUSG00000109704	Gm38414	A230084N10|Gm45568	predicted gene, 38414	ncRNA	0.931181135491946	1.3370983905861	1.28798272254601	0.978784239577382	2.62239702479676	2.8270983737807	1.53026305097045	2.70203355493556	4.35305628802834	0.000731930152634618	0.0150715640239877
Merged-chr2-84738685-2	chr2	84738585	84738785	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001005342)	TTS (NM_001005342)	2493.0	NR_029544	387149.0		NR_029544	ENSMUSG00000065484	Mir130a	Mirn130|Mirn130a|mir-130a	microRNA 130a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-88065390-2	chr17	88065289	88065489	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_001081034)	promoter-TSS (NM_001081034)	-98.0	NM_001081034	225055.0	Mm.386857	NM_001081034	ENSMUSG00000005371	Fbxo11	C80048|Jf	F-box protein 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46851787-4	chr8	46851694	46851894	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	112049.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-27439859-4	chr3	27439754	27439954	+	996.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356953, intron 24 of 26)	intron (NM_001356953, intron 24 of 26)	68503.0	NM_177330	208188.0	Mm.194721	NM_177330	ENSMUSG00000051136	Ghsr	C530020I22Rik|GHRP|GHS-R|Ghsr1a	growth hormone secretagogue receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-60451278-2	chr10	60451178	60451378	+	725.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252635, intron 14 of 68)	intron (NM_001252635, intron 14 of 68)	51552.0	NM_001164374	100302688.0	Mm.444135	NM_001164374	ENSMUSG00000090439	Gm17455	-	predicted gene, 17455	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45431253-2	chr7	45431153	45431353	+	571.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011304, intron 2 of 14)	intron (NM_011304, intron 2 of 14)	3211.0	NM_011304	20174.0	Mm.34410	NM_011304	ENSMUSG00000003868	Ruvbl2	mp47|p47	RuvB-like protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-81954558-4	chr11	81954411	81954611	+	886.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034013, intron 1 of 9)	intron (NM_001034013, intron 1 of 9)	13885.0	NM_001034013	11418.0	Mm.234998	NM_007384	ENSMUSG00000020704	Asic2	ACIC2|Accn1|BNC1|BNaC1|BNaC1a|Mdeg	acid-sensing (proton-gated) ion channel 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46452592-3	chr19	46452465	46452665	+	738.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025391, intron 6 of 11)	intron (NM_001025391, intron 6 of 11)	-49083.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-57957751-3	chr18	57957606	57957806	+	680.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	79028.0	NM_009194	20496.0	Mm.399997	NM_009194	ENSMUSG00000024597	Slc12a2	9330166H04Rik|Nkcc1|mBSC2|sy-ns	solute carrier family 12, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-68870499-2	chr3	68870399	68870599	+	969.75	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001167996, exon 1 of 1)	3' UTR (NM_001167996, exon 1 of 1)	913.0	NM_001167996	68725.0	Mm.45741	NM_001167996	ENSMUSG00000046999	1110032F04Rik	AI115547	RIKEN cDNA 1110032F04 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-152912379-4	chr3	152912342	152912542	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012028, intron 2 of 4)	intron (NM_012028, intron 2 of 4)	69765.0	NM_012028	26938.0	Mm.40915	NM_012028	ENSMUSG00000039037	St6galnac5	AI851940|Siat7e	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80775013-4	chr7	80774913	80775113	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016721, intron 2 of 37)	intron (NM_016721, intron 2 of 37)	28318.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-50069235-4	chr16	50069115	50069315	+	852.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045935, intron 1 of 3)	intron (NR_045935, intron 1 of 3)	3637.0	NR_045935	224180.0	Mm.146439	NM_175010		Gm4827	B130050K08|EG224180	predicted gene 4827	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-129353865-3	chr6	129353753	129353953	+	736.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177686, intron 3 of 5)	intron (NM_177686, intron 3 of 5)	3609.0	NM_177686	232413.0	Mm.90241	NM_177686	ENSMUSG00000053063	Clec12a	CLL-1|D230024O04|KLRL1|Micl	C-type lectin domain family 12, member a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-43334334-4	chr17	43334231	43334431	+	915.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26100.0	NM_001357332	224792.0	Mm.23478	NM_001081178	ENSMUSG00000056492	Adgrf5	8430401C09Rik|9330185D23|AI528491|Gpr116|mKIAA0758	adhesion G protein-coupled receptor F5	protein-coding	2.30080868611564	1.50335353124655	1.0101397444833	2.13508956556973	1.50032237619508	1.30138635100726	2.30987244707552	0.994952588621073	-0.561741269630945	0.643644200832467	0.983220888090013
Merged-chr2-16184138-2	chr2	16184038	16184238	+	902.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310455, intron 35 of 38)	MTD|LTR|ERVL-MaLR	-172166.0	NM_026162	67448.0	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95676589-1	chr3	95676489	95676689	+	854.0	f0_balb.idr	3' UTR (NM_144899, exon 18 of 18)	3' UTR (NM_144899, exon 18 of 18)	11328.0	NM_144899	229595.0	Mm.490574	NM_144899	ENSMUSG00000015850	Adamtsl4	ADAMTSL-4|Tsrc1	ADAMTS-like 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-24973216-4	chr16	24973139	24973339	+	865.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 11 of 12)	intron (NM_178665, intron 11 of 12)	-86400.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-107305329-2	chr11	107305229	107305429	+	764.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 4 of 9)	intron (NR_153311, intron 4 of 9)	-115948.0	NM_001161329	68979.0	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191907655-4	chr1	191907573	191907773	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_030669)	promoter-TSS (NR_030669)	-146.0	NR_030669	98736.0	Mm.379232	NM_001024489	ENSMUSG00000055833	1700034H15Rik	4930557M11Rik|BB016121	RIKEN cDNA 1700034H15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-10724253-3	chr17	10724158	10724358	+	923.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027032, intron 2 of 4)	intron (NM_027032, intron 2 of 4)	115933.0	NM_027032	69310.0	Mm.18889	NM_027032	ENSMUSG00000037196	Pacrg	1700008H23Rik	PARK2 co-regulated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-94919666-5	chr8	94919542	94919742	+	816.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1544.0	NM_001033533	234582.0	Mm.277871	NM_001033533	ENSMUSG00000063605	Ccdc102a	BC027663|Gm586	coiled-coil domain containing 102A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-96982926-2	chr5	96982826	96983026	+	601.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14763.0	NM_080708	140780.0	Mm.281490	NM_080708	ENSMUSG00000034663	Bmp2k	4933417M22Rik|AA673486|AV128808|BIKE	BMP2 inducible kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-72160363-2	chr8	72160262	72160462	+	588.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023126)	promoter-TSS (NM_023126)	-838.0	NM_023126	17274.0	Mm.162811	NM_023126	ENSMUSG00000003037	Rab8a	AA409338|Mel	RAB8A, member RAS oncogene family	protein-coding	2.69578266300094	2.90848673471597	2.81391606804261	2.83580391960903	2.62281874691688	3.12992856585923	2.83519179797692	2.64273239328197	0.0123422548999272	0.98529572328288	0.998431161219273
Merged-chr11-96890110-4	chr11	96890018	96890218	+	998.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26396.0	NM_001308183	80280.0	Mm.28297	NM_030248	ENSMUSG00000018669	Cdk5rap3	1810007E24Rik|BC002318|C53|C81486|HSF-27|IC53|LZAP|MST016	CDK5 regulatory subunit associated protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-16099957-4	chr16	16099841	16100041	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355731, intron 5 of 18)	intron (NM_001355731, intron 5 of 18)	46910.0	NM_001355731	224008.0	Mm.244703	NM_146068	ENSMUSG00000041974	Spidr	2310008H04Rik|Kiaa0146	scaffolding protein involved in DNA repair	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-109649296-2	chr7	109649196	109649396	+	560.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13A1|LTR|ERVK	-32149.0	NM_029811	76954.0	Mm.252009	NM_029811	ENSMUSG00000031024	St5	2010004M01Rik|2610305K15Rik	suppression of tumorigenicity 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-112344623-4	chr13	112344511	112344711	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001168405)	TTS (NM_001168405)	56093.0	NM_001168404	77318.0	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	4.42200075937599	4.15103597739728	5.7728144210841	3.89298258602348	5.00811620706715	3.64697462426066	4.98979970953261	2.73030841621348	-0.478655333477217	0.563446926265003	0.960367595640396
Merged-chr10-8059739-4	chr10	8059632	8059832	+	947.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-103609.0	NM_138667	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	-0.419455401179827	-0.0669736381968747	0.134954532740124	-0.414725305237281	-0.158365624090718	-0.407305169064959	-0.411045830773983	-0.414226212778106	-1.8004995814685	0.486044238262818	1
Merged-chr2-166806880-2	chr2	166806780	166806980	+	782.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085495, intron 1 of 38)	intron (NM_001085495, intron 1 of 38)	1299.0	NM_001085495	99371.0	Mm.297192	NM_001085495	ENSMUSG00000074582	Arfgef2	AI463430|AW493672|BIG2|E230011G24Rik	ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-38356143-2	chr18	38356043	38356243	+	648.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17150.0	NM_011937	26384.0	Mm.22374	NM_011937	ENSMUSG00000052102	Gnpda1	GNPDA|Gnp1|Gnpi|oscillin	glucosamine-6-phosphate deaminase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-12669277-2	chr5	12669177	12669377	+	706.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	286111.0	NM_028882	108151.0	Mm.89313	NM_028882	ENSMUSG00000040254	Sema3d	4631426B19Rik	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-98771336-3	chr7	98771218	98771418	+	807.866638	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63794.0	NM_001285794	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	1.82942357851758	4.71593131994907	3.76900617414564	3.30317949085668	2.65657839218999	4.16161760695481	2.28004664358782	1.42396411498515	-1.07262767544194	0.41518956959109	0.896676881011847
Merged-chr9-95599497-2	chr9	95599397	95599597	+	604.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38131.0	NM_029620	76477.0	Mm.46016	NM_029620	ENSMUSG00000015354	Pcolce2	2400001O18Rik|Pcpe2	procollagen C-endopeptidase enhancer 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-50225950-6	chr11	50225923	50226123	+	909.513916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145926, intron 1 of 14)	intron (NM_145926, intron 1 of 14)	688.0	NM_145926	103534.0	Mm.86759	NM_145926	ENSMUSG00000036620	Mgat4b	AA407995|GnTIVb	mannoside acetylglucosaminyltransferase 4, isoenzyme B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-40985840-4	chr14	40985737	40985937	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MCa|LINE|L1	-18941.0	NM_145928	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-62908045-4	chr14	62907863	62908063	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175546, intron 3 of 11)	intron (NM_175546, intron 3 of 11)	42421.0	NR_105860	102465311.0		NR_105860	ENSMUSG00000098858	Mir6541	Gm27311|mmu-mir-6541	microRNA 6541	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100212840-2	chr7	100212740	100212940	+	727.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-14767.0	NM_027629	70974.0	Mm.440524	NM_027629	ENSMUSG00000030729	Pgm2l1	4931406N15Rik|AI553438|BM32A	phosphoglucomutase 2-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-181837886-4	chr2	181837770	181837970	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153594)	promoter-TSS (NM_153594)	16.0	NM_001291211	245867.0	Mm.491085	NM_153594	ENSMUSG00000027589	Pcmtd2	5330414D10Rik|AI314201	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-129543982-1	chr6	129543882	129544082	+	553.0	f1_balb.idr	Intergenic	Intergenic	-10698.0	NR_045270	100504641.0	Mm.398286	NR_045270	ENSMUSG00000097675	1700101I11Rik	-	RIKEN cDNA 1700101I11 gene	ncRNA	0.462952304503479	0.327578114270858	0.821573111208801	0.312111034454302	0.468033580847649	1.32704170851435	0.32080755304706	0.790967743062085	1.62420278654207	0.354574623752792	1
Merged-chr5-17975424-4	chr5	17975323	17975523	+	920.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081143, intron 1 of 7)	intron (NM_001081143, intron 1 of 7)	12853.0	NM_001081143	242851.0	Mm.332230	NM_001081143	ENSMUSG00000028777	Gnat3	Ggust|Gtn	guanine nucleotide binding protein, alpha transducing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-72685053-4	chr14	72684984	72685184	+	879.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207636, intron 1 of 25)	intron (NM_207636, intron 1 of 25)	24919.0	NM_207636	319448.0	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32454264-2	chr2	32454164	32454364	+	645.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_194335, intron 1 of 1)	intron (NM_194335, intron 1 of 1)	-2794.0	NM_146118	227731.0	Mm.37395	NM_146118	ENSMUSG00000026819	Slc25a25	1110030N17Rik|MCSC|mKIAA1896	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-7858686-3	chr6	7858583	7858783	+	942.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_052993, intron 1 of 3)	Tigger1|DNA|TcMar-Tigger	13459.0	NM_052993	94192.0	Mm.102752	NM_052993	ENSMUSG00000042460	C1galt1	2210410E06Rik|AV284120|T-synthase	core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1	protein-coding	0.00901686741766389	-0.358765324937038	-0.363147925628995	-0.36653046889064	-0.222179032544607	0.384180839447266	-0.362181159631877	-0.365939464514639	1.46171654530203	0.557569209803385	1
Merged-chr1-136656730-3	chr1	136656658	136656858	+	717.527771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26638.0	NR_045324	100503460.0	Mm.30630	NR_045324	ENSMUSG00000097113	Gm19705	-	predicted gene, 19705	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-120163023-2	chr10	120162923	120163123	+	708.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359184, intron 8 of 11)	intron (NM_001359184, intron 8 of 11)	38574.0	NM_028679	73914.0	Mm.146194	NM_028679	ENSMUSG00000020227	Irak3	4833428C18Rik|AI563835|IRAK-M	interleukin-1 receptor-associated kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27011441-2	chr2	27011341	27011541	+	950.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001243240, intron 1 of 2)	intron (NM_001243240, intron 1 of 2)	1515.0	NM_001243239	381356.0	Mm.150270	NM_029862	ENSMUSG00000015488	Cacfd1	5930434B04Rik|mFwe	calcium channel flower domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-3749994-2	chr6	3749875	3750075	+	588.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001042725, intron 3 of 14)	intron (NM_001042725, intron 3 of 14)	13648.0	NM_001042725	12311.0	Mm.4642	NM_007588	ENSMUSG00000023964	Calcr	Clr|Ct-r	calcitonin receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27767004-13	chr2	27766878	27767078	+	953.1538699999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56395.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-89309255-5	chr7	89309135	89309335	+	985.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360746, intron 2 of 14)	ORR1F|LTR|ERVL-MaLR	29552.0	NM_028343	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-40628372-3	chr9	40628286	40628486	+	900.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57578.0	NM_133733	71566.0	Mm.280560	NM_133733	ENSMUSG00000032024	Clmp	9030425E11Rik|ACAM|ASP5|AW557819	CXADR-like membrane protein	protein-coding	3.11912293998487	3.17372486371841	4.17651206875975	3.66359053588189	4.05079053506807	4.28449263428209	5.32807174016368	3.68300837823366	1.19367392687535	0.0237478319520449	0.201736131548988
Merged-chr2-170240281-4	chr2	170240185	170240385	+	925.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-97610.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-52082544-3	chr9	52082435	52082635	+	823.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009041, exon 12 of 14)	exon (NM_009041, exon 12 of 14)	-33088.0	NR_105750	102465150.0		NR_105750	ENSMUSG00000099311	Mir6244	Gm27368|mmu-mir-6244	microRNA 6244	ncRNA	-0.778047400830726	-0.899388325918845	-0.906628590570071	-0.908568608772561	-0.552013603193575	-0.896875237439394	-0.906072351344798	-0.618317437363368	1.89319603140518	0.51387425451653	1
Merged-chr19-8721879-2	chr19	8721779	8721979	+	648.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161413, intron 1 of 9)	B1_Mm|SINE|Alu	1490.0	NM_001161413	17254.0	Mm.4114	NM_008577	ENSMUSG00000010095	Slc3a2	4F2|4F2HC|AI314110|Cd98|Ly-10|Ly-m10|Ly10|Mdu1|Mgp-2hc|NACAE	solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-26914012-2	chr2	26913912	26914112	+	995.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_013721)	TTS (NM_013721)	-2409.0	NM_013678	20931.0	Mm.389260	NM_013678	ENSMUSG00000014873	Surf2	Surf-2	surfeit gene 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123895331-2	chr5	123895223	123895423	+	934.400024	f0_c57.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	-11952.0	NM_026603	68184.0	Mm.28549	NM_026603	ENSMUSG00000023106	Denr	1500003K04Rik	density-regulated protein	protein-coding	3.35477161181297	4.54431372804856	3.84944761347632	4.07688237471259	2.71730396433913	2.93634867843155	3.58879688213657	2.87061017551498	-1.42807232755034	0.0109158267268745	0.115764368652658
Merged-chr19-46523213-4	chr19	46523079	46523279	+	988.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	21531.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-70854560-2	chr2	70854460	70854660	+	724.200012	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29080.0	NM_172664	228012.0	Mm.136511	NM_172664	ENSMUSG00000041997	Tlk1	4930545J15Rik	tousled-like kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-20915833-4	chr10	20915743	20915943	+	959.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36704.0	NM_026203	52906.0	Mm.253280	NM_026203	ENSMUSG00000019986	Ahi1	1700015F03Rik|Ahi-1|D10Bwg0629e	Abelson helper integration site 1	protein-coding	3.98915241456637	3.66234983776764	4.55032010791008	4.77547437863843	4.21321630427304	4.80934721015333	2.62245239878079	3.53843230294997	-0.390009320226094	0.471256543981246	0.925996726938583
Merged-chr17-10321284-4	chr17	10321184	10321384	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_037588)	TTS (NR_037588)	1365.0	NR_037588	100526796.0	Mm.384135	NR_037588		Cahm	B930003M22Rik	colon adenocarcinoma hypermethylated RNA	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-18823613-4	chr15	18823515	18823715	+	865.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009865, intron 1 of 11)	intron (NM_009865, intron 1 of 11)	3286.0	NM_009865	320873.0	Mm.117794	NM_009865	ENSMUSG00000022321	Cdh10	A830016G23Rik|C030003B10Rik|C030011H18Rik	cadherin 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-3463176-4	chr6	3463068	3463268	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178899, intron 9 of 9)	intron (NM_178899, intron 9 of 9)	31330.0	NM_178899	101202.0	Mm.206911	NM_178899	ENSMUSG00000044156	Hepacam2	AI987662	HEPACAM family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46595799-4	chr8	46595697	46595897	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001184, intron 6 of 14)	intron (NM_001001184, intron 6 of 14)	21430.0	NM_001001184	408022.0	Mm.217385	NM_001001184	ENSMUSG00000038225	Primpol	BC065112|Ccdc111	primase and polymerase (DNA-directed)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-58321511-4	chr14	58321403	58321603	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	248817.0	NM_013518	14180.0	Mm.8846	NM_013518	ENSMUSG00000021974	Fgf9	Eks	fibroblast growth factor 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46497773-4	chr8	46497665	46497865	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302163, intron 2 of 20)	intron (NM_001302163, intron 2 of 20)	6799.0	NM_001302163	14081.0	Mm.210323	NM_007981	ENSMUSG00000018796	Acsl1	Acas|Acas1|Acs|FACS|Facl2|LACS 1|LACS1	acyl-CoA synthetase long-chain family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-79229246-4	chr15	79229152	79229352	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008837)	promoter-TSS (NM_008837)	79.0	NM_008837	18693.0	Mm.259464	NM_008837	ENSMUSG00000068206	Pick1	Prkcabp	protein interacting with C kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-57762381-4	chr15	57762274	57762474	+	871.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199449, intron 1 of 3)	intron (NM_199449, intron 1 of 3)	67707.0	NM_199449	387609.0	Mm.36557	NM_199449	ENSMUSG00000071757	Zhx2	Afr-1|Afr1|Raf|mKIAA0854	zinc fingers and homeoboxes 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44553082-2	chr7	44552982	44553182	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009473, intron 2 of 9)	intron (NM_009473, intron 2 of 9)	883.0	NM_009473	22260.0	Mm.968	NM_009473	ENSMUSG00000060601	Nr1h2	AI194859|LXR|LXRB|LXRBSV|LXRbeta|NER1|OR-1|RIP15|UR|Unr|Unr2	nuclear receptor subfamily 1, group H, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-27508770-4	chr7	27508673	27508873	+	964.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019412, intron 5 of 5)	B3|SINE|B2	9449.0	NM_019412	19153.0	Mm.10119	NM_019412	ENSMUSG00000053198	Prx	L-Periaxin	periaxin	protein-coding	3.21699154449573	3.59636505494867	3.33638799205669	2.24058269978424	3.17636903570096	2.20932821553435	2.32824921140441	3.46748704228561	-0.454713396299455	0.523698778026226	0.948197779519432
Merged-chr9-69949199-1	chr9	69949099	69949299	+	612.0	f0_c57.idr	Intergenic	B4|SINE|B4	-40267.0	NM_016787	12175.0	Mm.159777	NM_016787	ENSMUSG00000011958	Bnip2	5730523P12Rik|BNIP2beta|Nip21	BCL2/adenovirus E1B interacting protein 2	protein-coding	1.51983291620333	2.08686460581607	2.01210307836634	1.27188366114188	1.65493948846073	2.20597044268955	1.30893998051984	1.27698616566976	-0.278429689793905	0.799431964495794	0.998431161219273
Merged-chr15-79745479-2	chr15	79745379	79745579	+	561.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045069, intron 3 of 3)	intron (NR_045069, intron 3 of 3)	2781.0	NR_045069	100504191.0	Mm.421420	NR_045069	ENSMUSG00000087543	Gm16576	-	predicted gene 16576	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81502170-2	chr10	81502070	81502270	+	681.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_010304)	TTS (NM_010304)	-2033.0	NM_010102	13611.0	Mm.33065	NM_010102	ENSMUSG00000044199	S1pr4	Edg6|Lpc1|S1p4	sphingosine-1-phosphate receptor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-58116504-4	chr19	58116421	58116621	+	991.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181415, intron 28 of 28)	intron (NM_181415, intron 28 of 28)	65354.0	NR_049196	100885835.0		NR_049196	ENSMUSG00000093757	Mir5623	Gm26068|mir-5623|mmu-mir-5623	microRNA 5623	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47521752-4	chr17	47521673	47521873	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081635, intron 1 of 6)	intron (NM_001081635, intron 1 of 6)	16722.0	NM_001081635	12445.0	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132509795-4	chr4	132509653	132509853	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144907, intron 1 of 9)	intron (NM_144907, intron 1 of 9)	703.0	NM_144907	230784.0	Mm.23608	NM_144907	ENSMUSG00000028893	Sesn2	HI95|SEST2|Ses2	sestrin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-72133331-4	chr9	72133231	72133431	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-21512.0	NM_011544	21406.0	Mm.171615	NM_011544	ENSMUSG00000032228	Tcf12	A130037E08Rik|ALF1|HEB|HEBAlt|HTF-4|HTF4|ME1|REB|bHLHb20	transcription factor 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-108667880-1	chr6	108667780	108667980	+	591.0	f0_balb.idr	TTS (NM_011498)	TTS (NM_011498)	-6946.0	NR_104577	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-15873665-2	chr11	15873565	15873765	+	772.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2A|LINE|L1	-384059.0	NM_001290539	211739.0	Mm.284015	NM_145967	ENSMUSG00000048834	Vstm2a	Vstm2	V-set and transmembrane domain containing 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99840145-2	chr15	99840045	99840245	+	625.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113545, intron 2 of 10)	MLT1G3|LTR|ERVL-MaLR	-19996.0	NM_023063	65970.0	Mm.33207	NM_023063	ENSMUSG00000023022	Lima1	Eplin	LIM domain and actin binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-116136196-2	chr9	116136096	116136296	+	788.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029575, intron 1 of 6)	intron (NM_029575, intron 1 of 6)	39167.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-88552149-4	chr17	88552078	88552278	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028658, intron 7 of 21)	intron (NM_028658, intron 7 of 21)	22054.0	NM_028658	73825.0	Mm.271817	NM_028658	ENSMUSG00000034709	Ppp1r21	1110018J12Rik|AI426045|AW550781|Ccdc128|Klraq1	protein phosphatase 1, regulatory subunit 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-12913777-2	chr7	12913677	12913877	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-8534.0	NM_009095	20103.0	Mm.5291	NM_009095	ENSMUSG00000012848	Rps5	AA617411	ribosomal protein S5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-54313603-1	chr6	54313503	54313703	+	745.5	f1_c57bl6.idr	intron (NR_033635, intron 4 of 13)	intron (NR_033635, intron 4 of 13)	-13409.0	NM_030024	78004.0	Mm.41984	NM_030024	ENSMUSG00000045725	Prr15	E130201N16Rik|G90	proline rich 15	protein-coding	0.0802790233341804	-0.132715221541539	0.249381724217428	0.221100535776421	0.0859257835316685	-0.131956654450335	-0.135321696169128	-0.138158950403053	-2.01576622395682	0.375631037836307	1
Merged-chr9-14699186-4	chr9	14699087	14699287	+	893.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36165.0	NR_152172	665374.0	Mm.387249	NR_152172	ENSMUSG00000111085	Gm7607	EG665374	predicted gene 7607	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-63404717-2	chr4	63404617	63404817	+	609.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1272.0	NM_001045514	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-103173788-1	chr3	103173688	103173888	+	548.0	f1_c57bl6.idr	intron (NM_001356330, intron 3 of 5)	intron (NM_001356330, intron 3 of 5)	2133.0	NM_001356331	68183.0	Mm.104919	NM_026602	ENSMUSG00000005687	Bcas2	6430539P16Rik|AI132645|C76366|C80030	breast carcinoma amplified sequence 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-99575856-4	chr9	99575778	99575978	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031403)	promoter-TSS (NM_031403)	79.0	NM_031403	83703.0	Mm.31324	NM_031403	ENSMUSG00000032469	Dbr1	AW018415	debranching RNA lariats 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-59679808-2	chr9	59679708	59679908	+	586.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_011099)	TTS (NM_011099)	23440.0	NM_011099	18746.0	Mm.326167	NM_011099	ENSMUSG00000032294	Pkm	AA414905|AL024370|AL024424|Pk-2|Pk-3|Pk3|Pkm2	pyruvate kinase, muscle	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-40917860-4	chr14	40917810	40918010	+	917.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145928, intron 3 of 8)	intron (NM_145928, intron 3 of 8)	-24945.0	NM_177816	328381.0	Mm.235694	NM_177816	ENSMUSG00000037833	Sh2d4b	A430109M18Rik|D030001E08	SH2 domain containing 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-87943176-4	chr4	87943081	87943281	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027326, intron 2 of 10)	intron (NM_027326, intron 2 of 10)	90226.0	NM_027326	70122.0	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-131642987-5	chr3	131642859	131643059	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289479, intron 13 of 13)	intron (NM_001289479, intron 13 of 13)	76927.0	NM_001289477	23971.0	Mm.244912	NM_011863	ENSMUSG00000028032	Papss1	AI325286|Asapk|SK1	3'-phosphoadenosine 5'-phosphosulfate synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-37761027-3	chr13	37760911	37761111	+	819.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65027.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-120058840-4	chr9	120058741	120058941	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009987, intron 1 of 1)	intron (NM_009987, intron 1 of 1)	9455.0	NM_009987	13051.0	Mm.44065	NM_009987	ENSMUSG00000052336	Cx3cr1	-	chemokine (C-X3-C motif) receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-131894593-4	chr3	131894559	131894759	+	956.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-190633.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-53853799-3	chr11	53853697	53853897	+	791.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033332, intron 1 of 3)	intron (NR_033332, intron 1 of 3)	5459.0	NR_033332	622459.0	Mm.479656	NR_033332	ENSMUSG00000081769	Gm12216	602-19-115	predicted gene 12216	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-17044964-2	chr6	17044864	17045064	+	746.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR17|LTR|ERVK	-20185.0	NM_207176	21753.0	Mm.436548	NM_011570	ENSMUSG00000029552	Tes	D6Ertd352e|TESS|Tes1|Tes2|testin2	testis derived transcript	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-55136895-2	chr11	55136795	55136995	+	597.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_172258, intron 6 of 10)	intron (NM_172258, intron 6 of 10)	14811.0	NM_172258	215332.0	Mm.87054	NM_172258	ENSMUSG00000049491	Slc36a3	PAT3|TRAMD2|tramdorin2	solute carrier family 36 (proton/amino acid symporter), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124026088-2	chr5	124025988	124026188	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177876, intron 1 of 3)	intron (NM_177876, intron 1 of 3)	6172.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-158039710-2	chr3	158039610	158039810	+	575.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289525, intron 1 of 12)	intron (NM_001289525, intron 1 of 12)	3028.0	NM_001289524	67144.0	Mm.358704	NM_024194	ENSMUSG00000063052	Lrrc40	2610040E16Rik|AI837674	leucine rich repeat containing 40	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-82021655-3	chr11	82021556	82021756	+	858.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13921.0	NM_011333	20296.0	Mm.290320	NM_011333	ENSMUSG00000035385	Ccl2	AI323594|HC11|JE|MCAF|MCP-1|MCP1|SMC-CF|Scya2|Sigje	chemokine (C-C motif) ligand 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-59037783-1	chr4	59037683	59037883	+	617.0	f1_balb.idr	intron (NM_025277, intron 1 of 2)	intron (NM_025277, intron 1 of 2)	2627.0	NM_025277	14700.0	Mm.41780	NM_025277	ENSMUSG00000038607	Gng10	AV006524	guanine nucleotide binding protein (G protein), gamma 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-123294808-2	chr7	123294708	123294908	+	775.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_001316713, intron 15 of 19)	intron (NM_001316713, intron 15 of 19)	75107.0	NM_001122643	70497.0	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-84876170-2	chr12	84876070	84876270	+	705.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_028577, exon 1 of 1)	non-coding (NR_028577, exon 1 of 1)	325.0	NM_013589	16997.0	Mm.3900	NM_013589	ENSMUSG00000002020	Ltbp2	AW208642	latent transforming growth factor beta binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-34905570-1	chr6	34905470	34905670	+	768.0	f0_balb.idr	exon (NM_001013366, exon 5 of 15)	exon (NM_001013366, exon 5 of 15)	5261.0	NM_001013366	101240.0	Mm.152120	NM_001013366	ENSMUSG00000058486	Wdr91	9530020G05Rik|AI987683|AU018665	WD repeat domain 91	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165791884-2	chr2	165791790	165791990	+	730.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_027230, intron 22 of 23)	intron (NM_027230, intron 22 of 23)	66283.0	NM_001252585	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	1.76838014780649	1.753280911515	3.27964356369863	3.06313435667147	2.22875607358558	2.50663567039609	2.76433596486205	2.3449502368948	-0.389976379925638	0.645023385669829	0.983701068654072
Merged-chr14-45644283-3	chr14	45644178	45644378	+	639.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176845, intron 1 of 12)	intron (NM_176845, intron 1 of 12)	13775.0	NR_039593	100628600.0		NR_039593	ENSMUSG00000093167	Mir5131	mmu-mir-5131|mu-mir-5131	microRNA 5131	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119906232-2	chr11	119906132	119906332	+	838.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_039557, intron 2 of 2)	intron (NR_039557, intron 2 of 2)	-7578.0	NM_001085498	208092.0	Mm.306673	NM_001085498	ENSMUSG00000025371	Chmp6	2400004G01Rik	charged multivesicular body protein 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-25056221-1	chr19	25056121	25056321	+	547.0	f1_c57bl6.idr	intron (NM_028785, intron 2 of 47)	B4|SINE|B4	56692.0	NM_028785	76088.0	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	0.0017452986078616	0.0191063719840433	0.0134278122019652	0.816166746170496	0.00283160194933788	0.220255336524631	0.351794959897522	0.322349722589167	-0.34023336821627	0.871274202018084	1
Merged-chr7-80014985-2	chr7	80014885	80015085	+	632.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-9829.0	NM_001145999	209225.0	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-114916939-4	chr5	114916850	114917050	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6290.0	NM_001359946	231655.0	Mm.95479	NM_145209	ENSMUSG00000041827	Oasl1	7530414C13Rik|oasl9	2'-5' oligoadenylate synthetase-like 1	protein-coding	3.50014112688644	3.46130914950069	4.13569698578191	3.90216958900108	4.44534769572203	4.03315820797907	4.43315474252555	4.21004789735671	0.707074360298839	0.110751326224936	0.520959649260371
Merged-chr17-71482654-2	chr17	71482548	71482748	+	751.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7305.0	NM_028887	74355.0	Mm.194450	NM_028887	ENSMUSG00000024054	Smchd1	4931400A14Rik|AW554188|MommeD1|mKIAA0650	SMC hinge domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-100026205-1	chr14	100026105	100026305	+	708.0	f0_balb.idr	intron (NM_010636, intron 2 of 6)	intron (NM_010636, intron 2 of 6)	123591.0	NM_010636	16597.0	Mm.396499	NM_010636	ENSMUSG00000072294	Klf12	2700063E05Rik|AI225908|AI315654|AP-2rep|B130052C06Rik|D530033K05Rik	Kruppel-like factor 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-62205424-1	chr4	62205324	62205524	+	617.0	f0_balb.idr	intron (NM_001290351, intron 1 of 3)	intron (NM_001290351, intron 1 of 3)	2778.0	NM_001290353	22696.0	Mm.5011	NM_009554	ENSMUSG00000028389	Zfp37	Tzn|Zfp-37	zinc finger protein 37	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-123091972-4	chr10	123091884	123092084	+	807.008301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15479.0	NM_001163025	67074.0	Mm.169924	NM_153395	ENSMUSG00000034602	Mon2	2610528O22Rik|AW495628|Sf21|mKIAA1040	MON2 homolog, regulator of endosome to Golgi trafficking	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-36097132-3	chr8	36097007	36097207	+	740.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172911, intron 1 of 5)	intron (NM_172911, intron 1 of 5)	2279.0	NM_172911	244418.0	Mm.244971	NM_172911	ENSMUSG00000050271	Prag1	9830148H23|D8Ertd82e|NACK|Sgk223|mFLJ00269	PEAK1 related kinase activating pseudokinase 1	protein-coding	1.81803779755706	0.962360159366171	2.0821170764821	2.01611240024111	1.74423786652035	1.42003771943922	0.947362165908457	0.930470022485077	-1.53244421226323	0.239193817159294	0.735635286471347
Merged-chr1-184733751-3	chr1	184733645	184733845	+	887.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1252.0	NM_008250	15284.0	Mm.1347	NM_008250	ENSMUSG00000039377	Hlx	Hlx1	H2.0-like homeobox	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-120908334-3	chr6	120908228	120908428	+	944.400024	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007544, intron 1 of 5)	BGLII|LTR|ERVK	8496.0	NM_007544	12122.0	Mm.235081	NM_007544	ENSMUSG00000004446	Bid	2700049M22Rik|AI875481|AU022477	BH3 interacting domain death agonist	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-66098455-3	chr15	66098349	66098549	+	814.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152923, intron 1 of 14)	L1M4|LINE|L1	-121645.0	NM_001145096	654498.0	Mm.364550	NM_001145096	ENSMUSG00000072511	Hhla1	F930104E18Rik	HERV-H LTR-associating 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-137313155-2	chr7	137313055	137313255	+	730.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_010096, exon 3 of 16)	exon (NM_010096, exon 3 of 16)	1290.0	NM_001113415	13593.0	Mm.258708	NM_010096	ENSMUSG00000010476	Ebf3	3110018A08Rik|O/E-2|mKIAA4201	early B cell factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-66886451-2	chr9	66886351	66886551	+	979.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	33254.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-143994973-2	chr3	143994873	143995073	+	781.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	207359.0	NM_001161770	16911.0	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-18057863-4	chr2	18057757	18057957	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_106115)	promoter-TSS (NR_106115)	11.0	NR_106115	102466840.0		NR_106115	ENSMUSG00000099050	Mir7655	Gm27794|mmu-mir-7655	microRNA 7655	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-7169976-4	chr17	7169872	7170072	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011299)	promoter-TSS (NM_011299)	-143.0	NM_011299	20112.0	Mm.268383	NM_011299	ENSMUSG00000023809	Rps6ka2	90kDa|D17Wsu134e|Rps6ka-rs1|Rsk3|p90rsk|pp90rsk	ribosomal protein S6 kinase, polypeptide 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-28441006-4	chr2	28440900	28441100	+	829.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(GTTTG)n|Simple_repeat|Simple_repeat	-6941.0	NM_001005420	241289.0	Mm.330095	NM_001005420	ENSMUSG00000035829	Ppp1r26	Gm347|Kiaa0649|mKIAA0649	protein phosphatase 1, regulatory subunit 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-136449166-2	chr4	136449067	136449267	+	578.0	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-20594.0	NM_024452	269593.0	Mm.485824	NM_024452	ENSMUSG00000001089	Luzp1	2700072H04Rik|AI266952|Luzp|mFLJ00226	leucine zipper protein 1	protein-coding	0.325897009762358	0.359689405284923	0.348830617240377	0.340315748261394	0.913297080652268	0.362110699234055	1.35838824740192	1.37790282629265	4.68383765599942	0.0108184896161508	0.115207312202288
Merged-chr12-108792333-4	chr12	108792235	108792435	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009537)	promoter-TSS (NM_009537)	-976.0	NM_009537	22632.0	Mm.3868	NM_009537	ENSMUSG00000021264	Yy1	AW488674|NF-E1	YY1 transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-95931712-4	chr16	95931613	95931813	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2636.0	NR_040484	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-95826617-3	chr15	95826513	95826713	+	955.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155276, intron 1 of 1)	intron (NR_155276, intron 1 of 1)	3459.0	NR_155277	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191995598-2	chr1	191995498	191995698	+	657.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3036.0	NR_039566	100628582.0		NR_039566	ENSMUSG00000093003	Mir3473c	mmu-mir-3473c	microRNA 3473c	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-86668777-4	chr4	86668673	86668873	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007408, intron 1 of 7)	intron (NM_007408, intron 1 of 7)	1286.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-31092091-2	chr5	31091991	31092191	+	828.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347323, intron 2 of 8)	intron (NM_001347323, intron 2 of 8)	1436.0	NM_011773	22784.0	Mm.1396	NM_011773	ENSMUSG00000029151	Slc30a3	Znt3	solute carrier family 30 (zinc transporter), member 3	protein-coding	-0.420305442527479	-0.409286399817395	-0.102942451813327	0.0911709579189952	-0.419622036503396	-0.408466705285675	-0.0960082315035137	-0.415213803480741	-1.44011447945642	0.578075964259219	1
Merged-chr13-49309267-4	chr13	49309172	49309372	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015759)	promoter-TSS (NM_015759)	-64.0	NM_015759	30938.0	Mm.291089	NM_015759	ENSMUSG00000037946	Fgd3	5830461L01Rik|ZFYVE5	FYVE, RhoGEF and PH domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-98330334-3	chr9	98330232	98330432	+	979.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357445, intron 1 of 3)	intron (NM_001357445, intron 1 of 3)	33762.0	NM_001357451	74080.0	Mm.294082	NM_144533	ENSMUSG00000032456	Nmnat3	4933408N02Rik|PNAT3	nicotinamide nucleotide adenylyltransferase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-81679812-3	chr17	81679713	81679913	+	628.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 1 of 8)	ORR1D2|LTR|ERVL-MaLR	58574.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-51077190-4	chr9	51077136	51077336	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033534)	promoter-TSS (NM_001033534)	-142.0	NM_001033534	244864.0	Mm.335152	NM_001033534	ENSMUSG00000060594	Layn	E030012M19Rik|Gm511	layilin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-125972243-2	chr2	125972143	125972343	+	759.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175154, intron 8 of 9)	ORR1E|LTR|ERVL-MaLR	-62415.0	NM_008008	14178.0	Mm.330557	NM_008008	ENSMUSG00000027208	Fgf7	Kgf	fibroblast growth factor 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-115785000-4	chr4	115784848	115785048	+	966.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_181040, exon 1 of 9)	5' UTR (NM_181040, exon 1 of 9)	134.0	NM_181040	230649.0	Mm.109600	NM_181040	ENSMUSG00000028710	Atpaf1	6330547J17Rik|AI593252|ATP11|ATP11p	ATP synthase mitochondrial F1 complex assembly factor 1	protein-coding	0.381051917862353	1.36129216921005	0.793722217266557	0.395573778277958	0.383234634909455	1.37650121788312	0.802771528815965	0.397081922973583	0.0397952747917191	0.982087283967485	0.998431161219273
Merged-chr12-117558122-3	chr12	117557992	117558192	+	887.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175930, intron 3 of 27)	intron (NM_175930, intron 3 of 27)	41613.0	NM_175930	217944.0	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding	2.3640045413642	1.93386355684846	1.87273706976996	1.99313939017969	3.01823548522131	2.13357686561239	2.47454384216893	2.91866242795179	1.42166606169277	0.0856777863070002	0.449677200398683
Merged-chr12-21417719-4	chr12	21417603	21417803	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011739)	promoter-TSS (NM_011739)	-267.0	NM_011739	22630.0	Mm.289630	NM_011739	ENSMUSG00000076432	Ywhaq	2700028P07Rik|AA409740|AU021156|R74690	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	protein-coding	5.74731037260052	5.60901059524716	5.95828481020846	5.97084373677524	3.82230426135413	4.52217522204128	5.16985919001774	4.03171727127363	-1.58129118924318	3.28593041556665e-06	0.000177588257324183
Merged-chr7-80353685-2	chr7	80353585	80353785	+	818.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172903, intron 21 of 23)	intron (NM_172903, intron 21 of 23)	10548.0	NM_026812	68695.0	Mm.21171	NM_026812	ENSMUSG00000030532	Hddc3	1110033O09Rik|C86475|MESH1	HD domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-12006875-4	chr4	12006768	12006968	+	817.979187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40294.0	NR_040577	100503636.0	Mm.209078	NR_040577		1700123M08Rik	1600025K15Rik	RIKEN cDNA 1700123M08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-153749812-2	chr1	153749699	153749899	+	963.125	f0_balb.idr|f0_c57.idr	intron (NM_011882, intron 1 of 8)	intron (NM_011882, intron 1 of 8)	373.0	NM_011882	24014.0	Mm.259254	NM_011882	ENSMUSG00000066800	Rnasel	E230029I04Rik	ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-43572422-2	chr17	43572322	43572522	+	910.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_013737, intron 1 of 11)	L2|LINE|L2	3971.0	NM_013737	27226.0	Mm.9277	NM_013737	ENSMUSG00000023913	Pla2g7	PAF-AH|R75400	phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	protein-coding	-1.06967240680523	-0.710236069543226	-1.06098991211599	-1.06646171652364	-0.691974872235455	-1.04731351244657	-1.05844530252289	-1.06612305398732	0.197949653019194	0.951687751235799	1
Merged-chr1-166380144-4	chr1	166380044	166380244	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030245, intron 1 of 7)	intron (NM_030245, intron 1 of 7)	977.0	NM_030245	27878.0	Mm.100665	NM_030245	ENSMUSG00000026563	Tada1	2900026B15Rik|D1Ertd251e|Staf42|Tada1l	transcriptional adaptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-131224250-2	chr2	131224150	131224350	+	620.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	IMPB_01|Satellite|Satellite	-9813.0	NM_001206383	228607.0	Mm.287226	NM_144888	ENSMUSG00000037523	Mavs	D430028G21Rik|IPS-1|Visa|cardif	mitochondrial antiviral signaling protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-49907039-2	chr16	49906939	49907139	+	596.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010581, intron 9 of 9)	intron (NM_010581, intron 9 of 9)	-48791.0	NR_153658	100503490.0	Mm.72499	NR_153658		Gm19723	-	predicted gene, 19723	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-17210199-4	chr16	17210098	17210298	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001033338, exon 1 of 1)	exon (NM_001033338, exon 1 of 1)	2063.0	NM_001033338	239731.0	Mm.86671	NM_001033338	ENSMUSG00000071636	Rimbp3	Gm1759|Gm603|RIM-BP3|mKIAA1666	RIMS binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-12416446-2	chr17	12416289	12416489	+	574.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008877, intron 17 of 18)	intron (NM_008877, intron 17 of 18)	37780.0	NM_008877	18815.0	Mm.971	NM_008877	ENSMUSG00000059481	Plg	AI649309|Pg	plasminogen	protein-coding	1.98465188912523	0.884846464362948	0.865912640293562	1.54191711603444	2.193834191899	0.889038309985245	1.1076192804953	1.6706698424277	0.484636877348798	0.724076261736613	0.998431161219273
Merged-chr6-145307461-4	chr6	145307363	145307563	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA4|LINE|L1	56911.0	NR_045598	100039495.0	Mm.121014	NR_045598	ENSMUSG00000086013	Gm15706	-	predicted gene 15706	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-74427614-1	chr17	74427514	74427714	+	544.0	f1_balb.idr	intron (NM_001033367, intron 8 of 8)	RMER10B|LTR|ERVL	31494.0	NM_001033367	268973.0	Mm.311884	NM_001033367	ENSMUSG00000039193	Nlrc4	9530011P19Rik|CLAN|CLAN1|CLANA|CLANB|CLANC|CLAND|Card12|IPAF	NLR family, CARD domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89209350-2	chr3	89209250	89209450	+	568.166626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_008094)	TTS (NM_008094)	4985.0	NM_013604	17827.0	Mm.280943	NM_013604	ENSMUSG00000064068	Mtx1	Gcap6|Mtx	metaxin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-58351892-4	chr10	58351807	58352007	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359116)	promoter-TSS (NM_001359116)	-56.0	NM_001359116	110829.0	Mm.57734	NM_026148	ENSMUSG00000019920	Lims1	2310016J22Rik|4921524A02Rik|AI507642|AU021743|AW551584|C430041B13Rik|Lims1l|PINCH|PINCH1	LIM and senescent cell antigen-like domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-64417147-4	chr8	64417063	64417263	+	744.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	97278.0	NR_030491	735270.0		NR_030491	ENSMUSG00000076042	Mir710	Mirn710|mmu-mir-710	microRNA 710	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-63650302-4	chr15	63650201	63650401	+	789.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	158438.0	NM_031378	83492.0	Mm.335619	NM_031378	ENSMUSG00000079025	Gsdmc	Gsdmc1|Mlze	gasdermin C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81080601-4	chr15	81080434	81080634	+	870.535706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001082536, intron 2 of 13)	intron (NM_001082536, intron 2 of 13)	24513.0	NM_153049	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-3236117-2	chr16	3236007	3236207	+	731.150024	f0_balb.idr|f1_balb.idr	Intergenic	(CTGTG)n|Simple_repeat|Simple_repeat	-356291.0	NM_146860	258859.0	Mm.377723	NM_146860	ENSMUSG00000051003	Olfr161	MOR131-1|OR912-47M6	olfactory receptor 161	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-31451481-4	chr5	31451380	31451580	+	988.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172993)	promoter-TSS (NM_172993)	-956.0	NM_172993	269639.0	Mm.259127	NM_172993	ENSMUSG00000062761	Zfp512	2500002M11Rik|AI450173|D230008H22|Znf512	zinc finger protein 512	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-105648932-3	chr5	105648815	105649015	+	907.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51054.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	3.489755808216	1.70228506295787	3.29691564869299	3.55231739751793	3.34516578905884	2.91517254042839	2.68292306415637	3.29997568728344	-0.172357727465378	0.806704376422533	0.998431161219273
Merged-chr19-41206946-3	chr19	41206839	41207039	+	795.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011904)	promoter-TSS (NM_011904)	-165.0	NM_011904	24087.0	Mm.89983	NM_011904	ENSMUSG00000025013	Tll2	-	tolloid-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-16214198-2	chr9	16214098	16214298	+	744.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080814, intron 2 of 24)	MTA_Mm|LTR|ERVL-MaLR	164033.0	NM_001080814	270120.0	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT atypical cadherin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-51500393-4	chr1	51500299	51500499	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22000.0	NM_001310549	109019.0	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-65111671-3	chr12	65111597	65111797	+	800.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178912, intron 14 of 22)	RLTR18|LTR|ERVK	36091.0	NM_178912	104806.0	Mm.374847	NM_178912	ENSMUSG00000055884	Fancm	AI427100|C730036B14Rik|D12Ertd364e	Fanconi anemia, complementation group M	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-116118138-2	chr3	116118038	116118238	+	577.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011693, intron 5 of 8)	intron (NM_011693, intron 5 of 8)	11550.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-123930970-6	chr9	123930805	123931005	+	946.227783	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	37787.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-15652063-4	chr17	15651970	15652170	+	825.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20282.0	NR_045431	71008.0	Mm.399492	NR_045431		4933401D09Rik	-	RIKEN cDNA 4933401D09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-88751936-2	chr15	88751855	88752055	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_181412, intron 1 of 2)	CpG	244.0	NM_181412	223773.0	Mm.396622	NM_181412	ENSMUSG00000034333	Zbed4	1700009F06Rik	zinc finger, BED type containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94417886-4	chr10	94417793	94417993	+	940.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 1 of 4)	intron (NM_001359762, intron 1 of 4)	-96964.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-149462438-2	chr3	149462338	149462538	+	573.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	187701.0	NR_040591	381482.0	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-92481306-3	chr6	92481203	92481403	+	886.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001134460)	promoter-TSS (NM_001134460)	89.0	NM_001134460	243548.0	Mm.248820	NM_001081146	ENSMUSG00000030020	Prickle2	6230400G14Rik|6720451F06Rik|mpk2	prickle planar cell polarity protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101641084-2	chr11	101640984	101641184	+	781.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13135.0	NM_025654	66599.0	Mm.41449	NM_025654	ENSMUSG00000010362	Rdm1	2410008M22Rik|AW212028|Rad52b	RAD52 motif 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-142601556-2	chr1	142601456	142601656	+	689.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1039141.0	NM_020025	26878.0	Mm.285580	NM_020025	ENSMUSG00000033849	B3galt2	-	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28598260-4	chr7	28598157	28598357	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027470)	promoter-TSS (NM_027470)	-73.0	NM_027470	70584.0	Mm.21876	NM_027470	ENSMUSG00000030602	Pak4	5730488L07Rik|AW555722|mKIAA1142	p21 (RAC1) activated kinase 4	protein-coding	6.49024742962683	6.42942059754704	5.92624298471933	6.47388794804515	6.32704806902306	6.27859024905587	6.20844226028386	6.21470162100924	-0.100139481803057	0.6390764664245	0.982599433509505
Merged-chr10-68137677-1	chr10	68137577	68137777	+	589.5	f0_balb.idr	intron (NM_023598, intron 4 of 9)	intron (NM_023598, intron 4 of 9)	141049.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	-1.39239040096365	-1.50706362993767	-1.51637061241093	-1.52401564492204	-1.25712099376264	-1.5050467680107	-1.51426371558223	-1.52264718775774	0.640753741356348	0.855918148133186	1
Merged-chr19-53325837-4	chr19	53325771	53325971	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360348, intron 1 of 5)	intron (NM_001360348, intron 1 of 5)	-3542.0	NM_010847	17859.0	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-25103998-2	chr12	25103898	25104098	+	787.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7906.0	NM_010496	15902.0	Mm.34871	NM_010496	ENSMUSG00000020644	Id2	AI255428|C78922|Idb2|bHLHb26	inhibitor of DNA binding 2	protein-coding	1.43852224332276	0.179527277091165	0.167551839965786	0.158090571336977	1.45830257453208	0.182184082644269	0.170220313258761	0.159757959971028	0.0423813134339355	0.989730303903632	0.998431161219273
Merged-chr1-186204377-3	chr1	186204275	186204475	+	798.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-87065.0	NM_146106	226791.0	Mm.257116	NM_146106	ENSMUSG00000039246	Lyplal1	BC027340|Q96AVO	lysophospholipase-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-151424563-3	chr3	151424515	151424715	+	778.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13267.0	NM_133222	170757.0	Mm.317261	NM_133222	ENSMUSG00000039167	Adgrl4	1110033N21Rik|ETL1|Eltd1|Etl	adhesion G protein-coupled receptor L4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127617017-10	chr10	127616861	127617061	+	786.955017	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 1 of 88)	intron (NM_008512, intron 1 of 88)	4187.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-52524992-2	chr2	52524892	52525092	+	829.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037099, intron 2 of 13)	intron (NM_001037099, intron 2 of 13)	33619.0	NM_146123	12298.0	Mm.330223	NM_146123	ENSMUSG00000017412	Cacnb4	3110038O15Rik|Cchb4|lh	calcium channel, voltage-dependent, beta 4 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-104864460-4	chr3	104864362	104864562	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355044)	promoter-TSS (NM_001355044)	43.0	NM_009797	12340.0	Mm.19142	NM_009797	ENSMUSG00000070372	Capza1	CAPZ|CAZ1|Cappa1|capZ alpha-1	capping protein (actin filament) muscle Z-line, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-3184306-2	chr11	3184209	3184409	+	1000.0	f0_balb.idr|f1_balb.idr	intron (NM_030207, intron 4 of 32)	intron (NM_030207, intron 4 of 32)	9154.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-163644150-2	chr2	163644050	163644250	+	909.7999880000001	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028113)	promoter-TSS (NR_028113)	-700.0	NR_028113	68386.0	Mm.410649	NR_028113	ENSMUSG00000058812	0610039K10Rik	-	RIKEN cDNA 0610039K10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-151497173-2	chr1	151497032	151497232	+	662.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360847, intron 1 of 7)	B2_Mm2|SINE|B2	3859.0	NM_001360845	19821.0	Mm.474038	NM_011277	ENSMUSG00000026484	Rnf2	AI326319|AI450156|AU019207|Ring1B|dinG	ring finger protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10836511-2	chr19	10836411	10836611	+	621.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-6033.0	NM_023044	65221.0	Mm.27387	NM_023044	ENSMUSG00000024737	Slc15a3	Ci1|cI-1	solute carrier family 15, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-38374000-4	chr15	38373874	38374074	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73263.0	NM_001289471	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-40638609-5	chr9	40638531	40638731	+	806.700012	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47333.0	NM_133733	71566.0	Mm.280560	NM_133733	ENSMUSG00000032024	Clmp	9030425E11Rik|ACAM|ASP5|AW557819	CXADR-like membrane protein	protein-coding	0.997933873923487	0.540400655919551	1.2114989820493	1.06823595876303	0.908022482264287	0.542248687213611	0.534001192853987	0.840530375682875	-1.43069088930163	0.380719977069527	1
Merged-chr8-120741773-2	chr8	120741673	120741873	+	783.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301811, intron 2 of 8)	intron (NM_001301811, intron 2 of 8)	3134.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124505225-4	chr6	124505129	124505329	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181344, intron 2 of 5)	L3|LINE|CR1	-7392.0	NM_023143	50909.0	Mm.333375	NM_023143	ENSMUSG00000055172	C1ra	AI132558|C1r|mC1rA	complement component 1, r subcomponent A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-59322545-2	chr10	59322445	59322645	+	879.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001316371)	promoter-TSS (NM_001316371)	-751.0	NM_001316371	18451.0	Mm.2212	NM_011030	ENSMUSG00000019916	P4ha1	AL022634|P4ha	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-102684896-4	chr13	102684782	102684982	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8665.0	NM_001360519	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-12993347-2	chr17	12993247	12993447	+	692.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175394)	promoter-TSS (NM_175394)	-808.0	NM_175394	60532.0	Mm.275521	NM_175394	ENSMUSG00000060475	Wtap	2810408K05Rik|9430038B09Rik	Wilms tumour 1-associating protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-17052781-2	chr4	17052681	17052881	+	685.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	-800112.0	NR_135158	17389.0	Mm.187315	NM_019724	ENSMUSG00000028226	Mmp16	MT-MMP 3|MT3-MMP|Mt3mmp	matrix metallopeptidase 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117879688-2	chr11	117879588	117879788	+	874.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6162.0	NM_027919	71776.0	Mm.3200	NM_027919	ENSMUSG00000017713	Tha1	1300017K07Rik|GLY1	threonine aldolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-109523839-2	chr7	109523739	109523939	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_037617)	TTS (NR_037617)	3707.0	NR_028079	100302499.0	Mm.482651	NR_028079	ENSMUSG00000065016	Snora3	MBI-28	small nucleolar RNA, H/ACA box 3	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-105694322-6	chr5	105694264	105694464	+	992.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-5605.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	2.85167246288508	2.9229526265468	2.82654864978283	2.54243213055338	2.53722094065043	2.59657644336965	3.02759099354267	1.76832987431423	-0.462277056121252	0.539290870397638	0.954403851908463
Merged-chr2-129315997-4	chr2	129315897	129316097	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6025.0	NM_010554	16175.0	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-14228697-4	chr2	14228593	14228793	+	935.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008625)	promoter-TSS (NM_008625)	-721.0	NM_008625	17533.0	Mm.2019	NM_008625	ENSMUSG00000026712	Mrc1	AW259686|CD206|MR	mannose receptor, C type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-54365467-3	chr14	54365372	54365572	+	856.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026936, intron 3 of 9)	intron (NM_026936, intron 3 of 9)	4631.0	NM_026936	69089.0	Mm.182340	NM_026936	ENSMUSG00000000959	Oxa1l	1810020M02Rik|AI894287	oxidase assembly 1-like	protein-coding	0.754585310771173	0.528121341245174	0.521738791271148	1.10447368585518	0.961078284610971	0.529567052821126	0.688667551579305	1.18833327528466	0.673280206604599	0.687796907004202	1
Merged-chr1-86229591-4	chr1	86229513	86229713	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027456, intron 19 of 20)	intron (NM_027456, intron 19 of 20)	-73608.0	NM_145222	227327.0	Mm.86467	NM_145222	ENSMUSG00000079445	B3gnt7	C330001H22Rik|beta-3GnT7	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-170155111-4	chr2	170154989	170155189	+	974.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12414.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-162566704-1	chr1	162566604	162566804	+	686.0	f1_balb.idr	Intergenic	LTR80B|LTR|ERVL	-3811.0	NM_001356527	53330.0	Mm.10699	NM_016796	ENSMUSG00000026696	Vamp4	D1Ertd147e|Vamp-4	vesicle-associated membrane protein 4	protein-coding	1.50644195441399	2.16980839403792	1.16811765599575	2.02937811618604	2.31907872957256	2.78335661676274	1.17473285513072	2.26079664913733	1.17949200753058	0.271063595972434	0.774458240988193
Merged-chr10-91209790-2	chr10	91209690	91209890	+	938.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_151510, intron 3 of 3)	intron (NR_151510, intron 3 of 3)	10829.0	NR_151510	102633753.0	Mm.416936	NR_151510		4930534H03Rik	-	RIKEN cDNA 4930534H03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-73709804-4	chr6	73709722	73709922	+	816.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-238801.0	NR_108032	73408.0	Mm.233629	NR_108032	ENSMUSG00000107408	1700065L07Rik	-	RIKEN cDNA 1700065L07 gene	ncRNA	0.140619215328962	0.166074656442782	0.798652156896751	0.151414912131282	0.581538304757374	0.167918742774288	1.20062972890315	0.15254107610421	1.41695639009591	0.490256422036286	1
Merged-chr16-97543395-1	chr16	97543295	97543495	+	619.0	f0_balb.idr	intron (NM_013606, intron 2 of 13)	intron (NM_013606, intron 2 of 13)	7312.0	NM_013606	17858.0	Mm.14157	NM_013606	ENSMUSG00000023341	Mx2	AI528743|Mx-2	MX dynamin-like GTPase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-5880700-2	chr5	5880600	5880800	+	550.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3A|LINE|L1	-131383.0	NM_027399	70358.0	Mm.85429	NM_027399	ENSMUSG00000015652	Steap1	2410007B19Rik|Prss24|Steap	six transmembrane epithelial antigen of the prostate 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-102138546-4	chr11	102138448	102138648	+	830.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6965.0	NM_145829	217214.0	Mm.31686	NM_145829	ENSMUSG00000048217	Nags	1700120E20Rik|argA	N-acetylglutamate synthase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-11187371-4	chr2	11187287	11187487	+	986.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008859, intron 1 of 17)	intron (NM_008859, intron 1 of 17)	15005.0	NM_008859	18761.0	Mm.329993	NM_008859	ENSMUSG00000026778	Prkcq	A130035A12Rik|AW494342|PKC-0|PKC-theta|PKCtheta|Pkcq	protein kinase C, theta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-25862739-2	chr17	25862639	25862839	+	762.75	f1_balb.idr|f1_c57bl6.idr	TTS (NM_026633)	TTS (NM_026633)	-1224.0	NM_001163766	106618.0	Mm.35470	NM_134124	ENSMUSG00000073434	Wdr90	3230401M21Rik|AI551153|mKIAA1924	WD repeat domain 90	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3378382-1	chr19	3378282	3378482	+	798.0	f0_c57.idr	exon (NM_013495, exon 15 of 19)	exon (NM_013495, exon 15 of 19)	-10475.0	NM_001039658	17771.0	Mm.209941	NM_010841	ENSMUSG00000024905	Tesmin	Mtl5	testis expressed metallothionein like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128797658-2	chr2	128797558	128797758	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 18 of 18)	intron (NM_008587, intron 18 of 18)	-20645.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-21055339-1	chr10	21055239	21055439	+	595.0	f1_c57bl6.idr	intron (NM_001177776, intron 3 of 6)	intron (NM_001177776, intron 3 of 6)	14519.0	NM_001177776	52906.0	Mm.253280	NM_026203	ENSMUSG00000019986	Ahi1	1700015F03Rik|Ahi-1|D10Bwg0629e	Abelson helper integration site 1	protein-coding	-1.20406370813143	-1.56956373024278	-1.57884638916872	-1.58647144159385	-1.598104728449	-1.56755213932999	-1.57674499865798	-1.58510656085539	-1.70745470802464	0.626337835847419	1
Merged-chr8-34108125-1	chr8	34108025	34108225	+	1000.0	f1_balb.idr	promoter-TSS (NM_001293758)	promoter-TSS (NM_001293758)	-311.0	NM_001293758	22428.0	Mm.150373	NM_011722	ENSMUSG00000031516	Dctn6	AU044699|WS-3|p27	dynactin 6	protein-coding	0.0595803054096793	0.667001053043716	0.0779024764005448	0.0710863529310359	0.0613075532682598	1.23953449847057	0.477183571394102	0.0722831638558596	1.79300144261871	0.388388656726525	1
Merged-chr5-76706011-3	chr5	76705940	76706140	+	735.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	114326.0	NM_199032	381644.0	Mm.332452	NM_199032	ENSMUSG00000036403	Cep135	BC062951|Cep4|Gm1044	centrosomal protein 135	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-35433645-4	chr2	35433565	35433765	+	884.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010283, intron 1 of 8)	intron (NM_010283, intron 1 of 8)	27784.0	NM_001308299	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-90585814-2	chr3	90585714	90585914	+	913.400024	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355597, intron 1 of 2)	intron (NM_001355597, intron 1 of 2)	-1138.0	NM_001355600	20197.0	Mm.440044	NM_011310	ENSMUSG00000001021	S100a3	S100E	S100 calcium binding protein A3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-35373318-2	chr15	35373218	35373418	+	767.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177151, intron 2 of 61)	(TCC)n|Simple_repeat|Simple_repeat	1772.0	NM_177151	666173.0	Mm.309250	NM_177151	ENSMUSG00000037646	Vps13b	1810042B05Rik|2310042E16Rik|4732488H20|C330002D13Rik|C87206|Coh1|D230005K13|mKIAA0532|mKIAA5032	vacuolar protein sorting 13B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-38945179-3	chr6	38945092	38945292	+	622.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 1 of 12)	ORR1E|LTR|ERVL-MaLR	26206.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129817872-6	chr4	129817825	129818025	+	740.1611330000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2554.0	NM_008974	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	2.14925612591442	1.06970039672442	1.62524848108731	1.57931903004848	2.29802632881329	1.07428256161212	1.47662773632763	1.83949335430866	0.268758243460107	0.820836422894928	0.998431161219273
Merged-chr8-107562000-2	chr8	107561900	107562100	+	563.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	10756.0	NR_029553	387158.0		NR_029553	ENSMUSG00000065439	Mir140	Mirn140|mir-140|mmu-mir-140	microRNA 140	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-44209280-1	chr12	44209180	44209380	+	1000.0	f0_balb.idr	intron (NM_013760, intron 1 of 2)	intron (NM_013760, intron 1 of 2)	788.0	NM_013760	27362.0	Mm.27432	NM_013760	ENSMUSG00000014905	Dnajb9	AA408011|AA673251|AA673481|AW556981|ERdj4|Mdg1|mDj7	DnaJ heat shock protein family (Hsp40) member B9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-87105984-3	chr17	87105866	87106066	+	842.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1713.0	NM_019654	56468.0	Mm.126885	NM_019654	ENSMUSG00000037104	Socs5	1810018L08Rik|Cish5|mKIAA0671	suppressor of cytokine signaling 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-3326781-2	chr17	3326681	3326881	+	681.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001122998, intron 1 of 26)	CpG	208.0	NM_001122998	24001.0	Mm.137134	NM_011878	ENSMUSG00000023800	Tiam2	3000002F19Rik|STEF|mKIAA2016	T cell lymphoma invasion and metastasis 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-95679006-4	chr10	95678922	95679122	+	943.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-114876.0	NM_001358996	71207.0	Mm.24397	NM_027722	ENSMUSG00000020029	Nudt4	4933436C10Rik|DIPP-2|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P	nudix (nucleoside diphosphate linked moiety X)-type motif 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124271275-4	chr6	124271178	124271378	+	899.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33373.0	NM_001170395	93671.0	Mm.37426	NM_053094	ENSMUSG00000008845	Cd163	CD163v2|CD163v3	CD163 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-145219387-2	chr4	145219287	145219487	+	784.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_011610, intron 9 of 9)	intron (NM_011610, intron 9 of 9)	-24382.0	NM_001276465	230895.0	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-145742451-2	chr2	145742351	145742551	+	615.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_033220, intron 3 of 3)	intron (NR_033220, intron 3 of 3)	41256.0	NR_033220	408057.0	Mm.486711	NR_033220	ENSMUSG00000087594	BC039771	-	cDNA sequence BC039771	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-86358982-5	chr1	86358855	86359055	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015507)	promoter-TSS (NR_015507)	500.0	NM_010880	17975.0	Mm.154378	NM_010880	ENSMUSG00000026234	Ncl	B530004O11Rik|C23|D0Nds28|D1Nds28|Nucl	nucleolin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-134497573-1	chr4	134497473	134497673	+	785.0	f1_balb.idr	intron (NM_001285849, intron 1 of 2)	intron (NM_001285849, intron 1 of 2)	532.0	NM_001285849	71904.0	Mm.142343	NM_027995	ENSMUSG00000037348	Paqr7	2310021M12Rik|AV001994|BB007237|Mpra|PGLP|mPR	progestin and adipoQ receptor family member VII	protein-coding	1.81180581603215	1.59396010821871	1.84606465136985	2.50005024326364	1.27642264704295	1.14756105777353	1.86090247933615	2.03039060063135	-1.0021898159882	0.354857203318705	0.853449831367998
Merged-chr19-44411694-2	chr19	44411594	44411794	+	623.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-3985.0	NM_009127	20249.0	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-20427309-2	chr16	20427209	20427409	+	553.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013790)	promoter-TSS (NM_013790)	-915.0	NM_176839	27416.0	Mm.20845	NM_013790	ENSMUSG00000022822	Abcc5	2900011L11Rik|AI132311|Abcc5a|Abcc5b|Mrp5	ATP-binding cassette, sub-family C (CFTR/MRP), member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-59223311-2	chr10	59223211	59223411	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_172939, exon 1 of 1)	exon (NM_172939, exon 1 of 1)	1389.0	NM_172939	268301.0	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-15065795-4	chr17	15065701	15065901	+	826.229187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12742.0	NM_001034891	381062.0	Mm.393767	NM_183133	ENSMUSG00000036552	Ermard	2210404J11Rik|2410011O22Rik|AI448938	ER membrane associated RNA degradation	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-76352110-4	chr10	76352010	76352210	+	971.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008787, intron 41 of 41)	ORR1E|LTR|ERVL-MaLR	-6819.0	NM_001081419	64451.0	Mm.33183	NM_001081419	ENSMUSG00000020231	Dip2a	4931420H10Rik|AI426328|Dip2|Kiaa0184-hp|mKIAA0184	disco interacting protein 2 homolog A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-106887952-4	chr8	106887851	106888051	+	903.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145412, intron 1 of 3)	intron (NM_145412, intron 1 of 3)	5642.0	NM_145412	214987.0	Mm.490308	NM_145412	ENSMUSG00000046691	Chtf8	5830457O10Rik|Ctf8|Derpc	CTF8, chromosome transmission fidelity factor 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-78209904-2	chr11	78209804	78210004	+	802.400024	f1_balb.idr|f1_c57bl6.idr	intron (NM_009297, intron 32 of 36)	MTC|LTR|ERVL-MaLR	16512.0	NM_001045516	216974.0	Mm.50974	NM_001045516	ENSMUSG00000044122	Proca1	4933404M19Rik	protein interacting with cyclin A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-70811034-4	chr16	70810947	70811147	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	194622.0	NR_040474	52645.0	Mm.188475	NR_040474		D16Ertd519e	-	DNA segment, Chr 16, ERATO Doi 519, expressed	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-5127429-4	chr18	5127324	5127524	+	978.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	38307.0	NR_153824	102637682.0	Mm.451914	NR_153824		Gm26682	Gm38715	predicted gene, 26682	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-118714796-2	chr13	118714696	118714896	+	914.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008002)	promoter-TSS (NM_008002)	97.0	NM_008002	14165.0	Mm.317323	NM_008002	ENSMUSG00000021732	Fgf10	AEY17|BB213776|Fgf-10|Gsfaey17	fibroblast growth factor 10	protein-coding	1.83434107296104	0.903824091535965	0.880597385645	0.862028425164969	2.23709916751955	0.908938248361941	1.81234491949284	2.36763987198753	2.19351621285653	0.10880423061044	0.516662200078125
Merged-chr14-8310647-2	chr14	8310547	8310747	+	559.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183187)	promoter-TSS (NM_183187)	-868.0	NM_001360338	268709.0	Mm.256058	NM_183187	ENSMUSG00000021750	Fam107a	DRR1	family with sequence similarity 107, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-62182019-2	chr2	62181919	62182119	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001242381, intron 2 of 25)	Lx5c|LINE|L1	135504.0	NM_033552	94229.0	Mm.314497	NM_033552	ENSMUSG00000026904	Slc4a10	NCBE|mKIAA4136	solute carrier family 4, sodium bicarbonate cotransporter-like, member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-136948137-4	chr2	136948022	136948222	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149746, intron 4 of 8)	intron (NR_149746, intron 4 of 8)	48771.0	NM_001038641	74243.0	Mm.330612	NM_028201	ENSMUSG00000027281	Slx4ip	2210009G21Rik|2410004I22Rik|C85661|Slxip	SLX4 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-11098560-4	chr19	11098453	11098653	+	780.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027058, intron 6 of 6)	intron (NM_027058, intron 6 of 6)	-17450.0	NM_022430	64381.0	Mm.34460	NM_022430	ENSMUSG00000024730	Ms4a8a	2010004L09Rik|AI481240|CD20L5|Ms4a8	membrane-spanning 4-domains, subfamily A, member 8A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-71793491-2	chr16	71793391	71793591	+	603.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17A2|LTR|ERVK	440836.0	NR_131116	319533.0	Mm.373754	NR_131115		8030451O07Rik	-	RIKEN cDNA 8030451O07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-70536963-2	chr4	70536863	70537063	+	602.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2035.0	NM_172694	230316.0	Mm.251188	NM_172694	ENSMUSG00000039270	Megf9	4933405H16Rik|9630025C07|Egfl5|mKIAA0818	multiple EGF-like-domains 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-75259558-3	chr4	75259469	75259669	+	903.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18723.0	NM_025849	66928.0	Mm.24332	NM_025849	ENSMUSG00000028398	Dmac1	1700027K24Rik|3110001D03Rik|Tmem261	distal membrane arm assembly complex 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-21501216-4	chr14	21501098	21501298	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017479, intron 1 of 16)	CpG	1413.0	NM_017479	54169.0	Mm.248967	NM_017479	ENSMUSG00000021767	Kat6b	AI507552|B130044K16Rik|MYST-4|Morf|Myst4|mKIAA0383|qkf|querkopf	K(lysine) acetyltransferase 6B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-25148420-2	chr8	25148320	25148520	+	925.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER34|LTR|ERV1	10813.0	NR_106187	102467006.0		NR_106187	ENSMUSG00000099142	Mir8108	Gm27484|mmu-mir-8108	microRNA 8108	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-31061035-4	chr2	31060936	31061136	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355105, intron 6 of 15)	intron (NM_001355105, intron 6 of 15)	35464.0	NM_001177650	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-120112067-1	chr6	120111967	120112167	+	944.0	f0_c57.idr	intron (NM_016718, intron 1 of 3)	intron (NM_016718, intron 1 of 3)	18687.0	NM_016718	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70904704-4	chr8	70904598	70904798	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1276.0	NM_173013	270058.0	Mm.248559	NM_173013	ENSMUSG00000019261	Map1s	6430517J16Rik|Bpy2ip1|Map8|Mtap1s|VCY2IP1	microtubule-associated protein 1S	protein-coding	5.58540594895341	5.09752382171207	5.85850106240694	6.44976654281603	5.42505201683264	5.91704495781992	5.651202424137	6.23114202738405	-0.0021671234178468	0.994365129135209	0.998431161219273
Merged-chr3-21951137-2	chr3	21951037	21951237	+	730.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-125515.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-9957989-2	chr19	9957889	9958089	+	730.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	BC1_Mm|scRNA|scRNA	-22611.0	NR_073181	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-30024918-2	chr17	30024818	30025018	+	763.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_151443, intron 1 of 4)	intron (NR_151443, intron 1 of 4)	19879.0	NM_001356265	21769.0	Mm.220972	NM_148926	ENSMUSG00000044477	Zfand3	AW539211|TEG-27|Tex27	zinc finger, AN1-type domain 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-8688454-2	chr11	8688354	8688554	+	641.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23919.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-40860084-3	chr13	40859978	40860178	+	802.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_023887, exon 1 of 3)	5' UTR (NM_023887, exon 1 of 3)	310.0	NM_023887	14538.0	Mm.314757	NM_008105	ENSMUSG00000021360	Gcnt2	5330430K10Rik|IGnT|IGnTA|IGnTB|IGnTC	glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-79300836-2	chr14	79300736	79300936	+	640.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_025427, exon 2 of 5)	exon (NM_025427, exon 2 of 5)	799.0	NM_025427	66214.0	Mm.29811	NM_025427	ENSMUSG00000022018	Rgcc	1190002H23Rik|Rgc-32|Rgc32	regulator of cell cycle	protein-coding	0.396034462932673	0.782592638245163	0.878540145432698	0.575598606568627	0.893573972660082	0.421552765670394	0.413768523769537	1.14966415153032	0.52984887866161	0.758933157329141	1
Merged-chr15-98389971-4	chr15	98389881	98390081	+	983.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8464.0	NR_015496	73302.0	Mm.272760	NR_015496	ENSMUSG00000099353	1700031M16Rik	4930413L20Rik	RIKEN cDNA 1700031M16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-64223357-3	chr1	64223263	64223463	+	604.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-101974.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-38307854-4	chr5	38307746	38307946	+	975.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11663.0	NM_013503	13492.0	Mm.167154	NM_013503	ENSMUSG00000039358	Drd5	D5R|Drd-5|Drd1b|Gpcr1	dopamine receptor D5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-80684500-2	chr18	80684399	80684599	+	983.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198429, intron 2 of 9)	intron (NM_198429, intron 2 of 9)	23674.0	NM_001164111	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	3.34376081150791	2.94357816837158	1.39042779182273	2.06675742923171	1.28213657910702	1.14834624562229	1.4024691193877	2.20649422607296	-2.40555536687163	0.0213007407870151	0.187090986795467
Merged-chr17-28756596-4	chr17	28756498	28756698	+	907.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12719.0	NM_011950	26415.0	Mm.27970	NM_011950	ENSMUSG00000004864	Mapk13	SAPK4|Serk4	mitogen-activated protein kinase 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-94261918-2	chr13	94261818	94262018	+	713.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346609, intron 1 of 8)	B1_Mus2|SINE|Alu	23363.0	NM_029153	107767.0	Mm.201455	NM_029153	ENSMUSG00000021687	Scamp1	4930505M11Rik|AI415563|AW122395	secretory carrier membrane protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-95593034-2	chr1	95592934	95593134	+	595.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009183, intron 4 of 4)	intron (NM_009183, intron 4 of 4)	74560.0	NM_009183	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-122090762-3	chr3	122090657	122090857	+	691.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007378, intron 11 of 49)	intron (NM_007378, intron 11 of 49)	46297.0	NM_007378	11304.0	Mm.3918	NM_007378	ENSMUSG00000028125	Abca4	AW050280|Abc10|Abcr|D430003I15Rik|RmP	ATP-binding cassette, sub-family A (ABC1), member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59198020-2	chr15	59197920	59198120	+	671.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-108928.0	NR_045613	100416830.0	Mm.490788	NR_045613	ENSMUSG00000098528	Zfp572	4930472F24Rik	zinc finger protein 572	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-111074093-4	chr10	111074012	111074212	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64046.0	NM_172554	320150.0	Mm.339281	NM_172554	ENSMUSG00000035798	Zdhhc17	A230053P19Rik|BB187739|D130071N24Rik|DHHC-17|Hip14	zinc finger, DHHC domain containing 17	protein-coding	2.74205680396038	2.00194187757557	2.61882593431261	2.32968851736368	2.76396953388116	2.01524197808272	2.73654341791303	2.34122516877988	0.100340905696348	0.899875652015007	0.998431161219273
Merged-chr2-160727798-2	chr2	160727698	160727898	+	696.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3512.0	NM_021280	18803.0	Mm.44463	NM_021280	ENSMUSG00000016933	Plcg1	AI894140|Cded|Plc-1|Plc-gamma1|Plcg-1	phospholipase C, gamma 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-122222544-2	chr14	122222520	122222720	+	682.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_029556, intron 1 of 7)	intron (NM_029556, intron 1 of 7)	11018.0	NR_015532	68245.0	Mm.443285	NR_015532	ENSMUSG00000100585	1700108J01Rik	-	RIKEN cDNA 1700108J01 gene	ncRNA	0.346751259858256	1.3696151170116	0.0267285536270085	0.0195151752714312	0.490264488175924	0.037972092918565	0.0287711719842471	0.0207831103244576	-2.36109010956204	0.255013822571675	1
Merged-chr19-43751400-2	chr19	43751280	43751480	+	620.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_144874, exon 2 of 9)	exon (NM_144874, exon 2 of 9)	1620.0	NM_144874	226139.0	Mm.248237	NM_144874	ENSMUSG00000040018	Cox15	2900026G05Rik	cytochrome c oxidase assembly protein 15	protein-coding	1.85212822605815	2.56070178685681	1.01971789719472	1.42481751348097	2.20781583040558	1.52998618179688	1.64950505226145	1.00394120930803	-0.479053688197944	0.68754086562097	0.996533206832645
Merged-chr2-79050841-3	chr2	79050738	79050938	+	949.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	181160.0	NR_151457	22193.0	Mm.1485	NM_009454	ENSMUSG00000027011	Ube2e3	Ubce4|ubcM2	ubiquitin-conjugating enzyme E2E 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-43643319-4	chr7	43643218	43643418	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028236, intron 4 of 5)	intron (NM_028236, intron 4 of 5)	8579.0	NM_028236	72431.0	Mm.158821	NM_028236	ENSMUSG00000030472	Ceacam18	2010110O04Rik	carcinoembryonic antigen-related cell adhesion molecule 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-101828673-2	chr5	101828573	101828773	+	898.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	63543.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-138840172-3	chr1	138840072	138840272	+	841.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025565, intron 1 of 4)	intron (NM_001025565, intron 1 of 4)	2272.0	NM_001042577	16876.0	Mm.250732	NM_010714	ENSMUSG00000019230	Lhx9	3110009O07Rik|BB104635|LH2B	LIM homeobox protein 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44397625-2	chr9	44397525	44397725	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008063)	promoter-TSS (NM_008063)	530.0	NM_001293630	14385.0	Mm.30087	NM_008063	ENSMUSG00000032114	Slc37a4	100043178|G6PT|G6pt1|GSD-1b|mG6PT	solute carrier family 37 (glucose-6-phosphate transporter), member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-136941358-4	chr6	136941271	136941471	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301301, intron 1 of 5)	intron (NM_001301301, intron 1 of 5)	132.0	NM_001301305	11857.0	Mm.2241	NM_007486	ENSMUSG00000030220	Arhgdib	D4|Gdid4|Ly-GDI	Rho, GDP dissociation inhibitor (GDI) beta	protein-coding	3.11237030156604	3.30417058300344	2.8661138116477	2.89983534386746	3.41787699673816	3.8089061565057	2.6072112762153	3.70403454977484	0.667307429833614	0.269274534701053	0.772792064530551
Merged-chr18-68066203-2	chr18	68066103	68066303	+	661.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172631, intron 2 of 5)	intron (NM_172631, intron 2 of 5)	133030.0	NM_172631	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-121077830-1	chr6	121077730	121077930	+	581.0	f1_balb.idr	intron (NM_001270475, intron 1 of 31)	intron (NM_001270475, intron 1 of 31)	3797.0	NM_153396	194401.0	Mm.122399	NM_153396	ENSMUSG00000051586	Mical3	C130040D16Rik|Mical-3|mKIAA1364	microtubule associated monooxygenase, calponin and LIM domain containing 3	protein-coding	1.71698340621134	1.47508923613482	0.743711849952682	0.732624725038233	1.73434594417277	0.760973172453765	0.964590336943086	1.25073527059194	-0.0499668568663492	0.973038031850387	0.998431161219273
Merged-chr11-101462408-2	chr11	101462354	101462554	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_012037, exon 3 of 6)	exon (NM_012037, exon 3 of 6)	3745.0	NM_012037	26949.0	Mm.29210	NM_012037	ENSMUSG00000034993	Vat1	VAT-1	vesicle amine transport 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-52002967-2	chr12	52002867	52003067	+	765.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347404, intron 2 of 3)	intron (NM_001347404, intron 2 of 3)	3540.0	NM_029545	328092.0	Mm.2821	NM_029545	ENSMUSG00000020956	Dtd2	4930578F06Rik|6530401N04Rik|B830049N13Rik	D-tyrosyl-tRNA deacylase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-119087411-2	chr9	119087299	119087499	+	583.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019676, intron 1 of 14)	MIRc|SINE|MIR	862.0	NM_001293648	18799.0	Mm.23963	NM_019676	ENSMUSG00000010660	Plcd1	AW212592|C79986	phospholipase C, delta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-73774155-3	chr13	73774036	73774236	+	833.099976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360694, intron 1 of 24)	intron (NM_001360694, intron 1 of 24)	10439.0	NM_011390	20499.0	Mm.275800	NM_011390	ENSMUSG00000017756	Slc12a7	AA408796|D13Ertd261e|Kcc4	solute carrier family 12, member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-97985942-2	chr3	97985842	97986042	+	628.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27596.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-122780612-4	chr2	122780508	122780708	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027888, intron 1 of 9)	intron (NR_027888, intron 1 of 9)	-1391.0	NM_021507	59010.0	Mm.28986	NM_021507	ENSMUSG00000005803	Sqor	0610039J17Rik|4930557M22Rik|Sqrdl	sulfide quinone oxidoreductase	protein-coding	5.52467401381292	4.56185682899807	5.10098343131029	4.97317328571808	5.81237810637363	5.13703469127423	4.98369123586009	4.88394330487327	0.201004627932664	0.560063267396996	0.960321604678676
Merged-chr2-167689051-4	chr2	167688913	167689113	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009883)	promoter-TSS (NM_009883)	98.0	NM_001287738	12608.0	Mm.439656	NM_009883	ENSMUSG00000056501	Cebpb	C/EBPbeta|CRP2|IL-6DBP|LAP|LIP|NF-IL6|NF-M|Nfil6	CCAAT/enhancer binding protein (C/EBP), beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-83486628-2	chr12	83486528	83486728	+	605.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_058212, intron 1 of 8)	CpG	1108.0	NM_001267626	70127.0	Mm.151308	NM_058212	ENSMUSG00000021221	Dpf3	2810403B03Rik|6530402L11Rik|BAF45C|C78788|CERD4|cer-d4	D4, zinc and double PHD fingers, family 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-124708317-9	chr2	124708211	124708411	+	926.037048	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54730.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-61014711-3	chr18	61014621	61014821	+	788.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_201353)	promoter-TSS (NM_201353)	-522.0	NM_201353	240332.0	Mm.39846	NM_201353	ENSMUSG00000052026	Slc6a7	AW455934|PROT	solute carrier family 6 (neurotransmitter transporter, L-proline), member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-145115437-2	chr5	145115337	145115537	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023142, intron 1 of 9)	intron (NM_023142, intron 1 of 9)	1181.0	NM_023142	11867.0	Mm.30010	NM_023142	ENSMUSG00000029622	Arpc1b	41kDa|AA408064|AA408534|AA571392|AF007010|AW208418|L72|SOP2Hs|p41-ARC	actin related protein 2/3 complex, subunit 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99383441-2	chr7	99383341	99383541	+	756.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_201352, intron 1 of 17)	intron (NM_201352, intron 1 of 17)	1923.0	NM_001362166	233552.0	Mm.286317	NM_201352	ENSMUSG00000035314	Gdpd5	BC024955|Gde2	glycerophosphodiester phosphodiesterase domain containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-79352863-3	chr15	79352719	79352919	+	637.083313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001304832, intron 1 of 2)	intron (NM_001304832, intron 1 of 2)	4417.0	NM_001304832	17133.0	Mm.86646	NM_010755	ENSMUSG00000042622	Maff	-	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein F (avian)	protein-coding	-1.36245527554381	-1.47758440807466	-1.48704571646499	-1.19707836829368	-1.50667469222183	-1.47553410307769	-1.4849038836314	-1.49342636832094	-1.86907304515541	0.591535440840713	1
Merged-chr2-173660613-1	chr2	173660513	173660713	+	579.0	f0_balb.idr	intron (NM_024436, intron 1 of 6)	intron (NM_024436, intron 1 of 6)	768.0	NM_024436	19334.0	Mm.275304	NM_024436	ENSMUSG00000027519	Rab22a	3732413A17Rik|AI662177|AW319644|AW550514|E130120E14Rik|Rab22	RAB22A, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-61371380-4	chr9	61371270	61371470	+	993.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001083927)	promoter-TSS (NM_001083927)	-996.0	NM_001083928	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-72290136-3	chr2	72290022	72290222	+	657.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023057, intron 1 of 19)	intron (NM_023057, intron 1 of 19)	4421.0	NM_178084	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-29445284-4	chr10	29445186	29445386	+	882.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-82844.0	NM_001110197	68031.0	Mm.28930	NM_026518	ENSMUSG00000038876	Rnf146	2610509H23Rik|Iduna	ring finger protein 146	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32863499-3	chr2	32863293	32863493	+	787.972229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12741.0	NM_146119	227737.0	Mm.301646	NM_146119	ENSMUSG00000026796	Fam129b	9130404D14Rik	family with sequence similarity 129, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-21669046-4	chr10	21668917	21669117	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21828.0	NR_045843	432436.0	Mm.244553	NM_001004162	ENSMUSG00000056716	Gm5420	EG432436	predicted gene 5420	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135007491-2	chr5	135007391	135007591	+	875.099976	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur2|SINE|Alu	-1661.0	NM_001190437	68758.0	Mm.389700	NM_145215	ENSMUSG00000040532	Abhd11	1110054D16Rik|A630008N09Rik|Wbscr21	abhydrolase domain containing 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70809027-1	chr14	70808927	70809127	+	760.0	f1_c57bl6.idr	Intergenic	Intergenic	34646.0	NM_010071	13449.0	Mm.243323	NM_010071	ENSMUSG00000022102	Dok2	DokR|Frip|dok-R	docking protein 2	protein-coding	-0.0265083476100844	-0.000850468535537663	1.06261518914522	-0.0155897065506907	0.913016476997013	0.000996603013965008	-0.00728580903699322	-0.0144538913568142	-0.33548629296323	0.88287878949908	1
Merged-chr1-167334468-2	chr1	167334368	167334568	+	585.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001039483)	TTS (NM_001039483)	-15523.0	NM_019993	56752.0	Mm.292539	NM_019993	ENSMUSG00000026687	Aldh9a1	AA139417|Abaldh|ESTM40|TMABA-DH|Tmabadh	aldehyde dehydrogenase 9, subfamily A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-61266681-4	chr19	61266604	61266804	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-38286.0	NM_009970	12982.0	Mm.287228	NM_009970	ENSMUSG00000059326	Csf2ra	CD116|Csfgmra|GM-CSF-Ra|GM-CSFR	colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-101355574-3	chr4	101355479	101355679	+	848.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040640, intron 1 of 3)	intron (NR_040640, intron 1 of 3)	669.0	NR_040708	77866.0	Mm.137053	NR_040708	ENSMUSG00000086782	E130102H24Rik	-	RIKEN cDNA E130102H24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-124080644-4	chr9	124080537	124080737	+	937.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPEy-int|LTR|ERVK	-21546.0	NM_009915	12772.0	Mm.6272	NM_009915	ENSMUSG00000049103	Ccr2	Cc-ckr-2|Ccr2a|Ccr2b|Ckr2|Ckr2a|Ckr2b|Cmkbr2|mJe-r	chemokine (C-C motif) receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-84869004-3	chr11	84868856	84869056	+	861.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153144, intron 2 of 13)	intron (NM_153144, intron 2 of 13)	-1049.0	NR_131201	102635561.0	Mm.341797	NR_131197		Ggnbp2os	-	gametogenetin binding protein 2, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-48872489-4	chr13	48872384	48872584	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-1599.0	NM_011078	18676.0	Mm.486213	NM_011078	ENSMUSG00000038025	Phf2	GRC5	PHD finger protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-50109011-4	chr11	50108917	50109117	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290750, intron 7 of 7)	intron (NM_001290750, intron 7 of 7)	-22343.0	NM_001290759	76795.0	Mm.290975	NM_029745	ENSMUSG00000036644	Tbc1d9b	-	TBC1 domain family, member 9B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-64422242-3	chr13	64422177	64422377	+	985.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-10276.0	NM_053180	105278.0	Mm.74982	NM_053180	ENSMUSG00000021483	Cdk20	4932702G04Rik|AU019450|AW558027|CDCH|Ccrk|PNQLARE|p42	cyclin-dependent kinase 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-26455225-2	chr12	26455125	26455325	+	601.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021384, intron 1 of 5)	intron (NM_021384, intron 1 of 5)	1227.0	NM_021384	58185.0	Mm.24045	NM_021384	ENSMUSG00000020641	Rsad2	2510004L01Rik|Vig1|cig5	radical S-adenosyl methionine domain containing 2	protein-coding	-0.84225994394335	-0.831428863958154	-0.835957247575255	-0.302521593489503	-0.841675728124419	-0.467920664998323	-0.835278697141057	-0.837914911830192	-0.772653464344084	0.800526320126948	1
Merged-chr1-172643244-2	chr1	172643144	172643344	+	863.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10270.0	NM_026725	68440.0	Mm.33024	NM_026725	ENSMUSG00000026544	Dusp23	1300005N15Rik|LDP-3	dual specificity phosphatase 23	protein-coding	-0.0755938747399067	-0.0434619179596425	-0.0537095066192652	-0.0617962449285361	-0.0735105557204766	0.76180987999418	1.37033180970443	-0.0603717453197508	4.52898230351431	0.0338547336002546	1
Merged-chr12-112145428-4	chr12	112145355	112145555	+	913.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001097621)	promoter-TSS (NM_001097621)	-753.0	NM_001097621	668303.0	Mm.313104	NM_001097621	ENSMUSG00000021294	Kif26a	mKIAA1236	kinesin family member 26A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-137745207-2	chr5	137745107	137745307	+	600.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029805)	promoter-TSS (NM_029805)	-762.0	NM_023910	78829.0	Mm.286399	NM_023910	ENSMUSG00000029723	Tsc22d4	0610009M14Rik|1700023B23Rik|AI415410|Thg-1pit|Tilz2	TSC22 domain family, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-171705466-1	chr2	171705366	171705566	+	540.0	f1_balb.idr	Intergenic	B4A|SINE|B4	257333.0	NR_040509	75655.0	Mm.396203	NR_040509	ENSMUSG00000086823	1700028P15Rik	-	RIKEN cDNA 1700028P15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-116633998-4	chr8	116633907	116634107	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029441, intron 1 of 6)	MTD|LTR|ERVL-MaLR	98984.0	NM_029441	75796.0	Mm.159575	NM_029441	ENSMUSG00000031758	Cdyl2	1700029M19Rik|4930453I21Rik|Gm20194	chromodomain protein, Y chromosome-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71501829-1	chr17	71501729	71501929	+	661.0	f1_balb.idr	intron (NM_023294, intron 13 of 16)	B3|SINE|B2	25028.0	NM_023294	67052.0	Mm.225956	NM_023294	ENSMUSG00000024056	Ndc80	2610020P18Rik|AV139730|HEC|HEC1|Kntc2	NDC80 kinetochore complex component	protein-coding	0.0907822820939438	0.67354801633614	0.107624912305646	1.22423048991741	0.263907888747578	0.117484094496215	0.318031564981521	0.102445250662447	-2.72601468828918	0.175617841666417	1
Merged-chr2-92912149-2	chr2	92912049	92912249	+	727.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2952.0	NM_030725	80976.0	Mm.33490	NM_030725	ENSMUSG00000027220	Syt13	5730409J20Rik|AI549909|mKIAA1427	synaptotagmin XIII	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28302343-2	chr7	28302243	28302443	+	598.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007866)	promoter-TSS (NM_007866)	-558.0	NM_007866	13389.0	Mm.12896	NM_007866	ENSMUSG00000003436	Dll3	pu|pudgy	delta like canonical Notch ligand 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-100665139-4	chr15	100665036	100665236	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001270537, intron 1 of 10)	intron (NM_001270537, intron 1 of 10)	4364.0	NM_001270537	668218.0	Mm.451225	NM_001270537	ENSMUSG00000098112	Bin2	-	bridging integrator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134310454-3	chr6	134310343	134310543	+	997.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153848, intron 8 of 8)	L1_Mus2|LINE|L1	-85886.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	0.952597265667691	0.809730700360135	0.790855138596269	1.34473450936906	1.62095507179036	1.96942494613217	0.795069739379977	2.1415915247191	2.67852791858271	0.0546692008978613	0.34365407214768
Merged-chr6-65516877-4	chr6	65516772	65516972	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73526.0	NM_001001495	414084.0	Mm.117558	NM_001001495	ENSMUSG00000044162	Tnip3	9030611K07Rik|ABIN-3|LIND	TNFAIP3 interacting protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-29853391-4	chr3	29853287	29853487	+	837.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37630.0	NR_110437	102636083.0		NR_110437	ENSMUSG00000102590	Mannr	Manr	Mecom adjacent non-protein coding RNA	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166726605-2	chr2	166726505	166726705	+	603.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-12773.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-78511578-2	chr11	78511478	78511678	+	558.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026389)	promoter-TSS (NM_026389)	590.0	NM_199199	195040.0	Mm.383431	NM_199199	ENSMUSG00000051232	Tmem199	AI316787|AI848469|R74819	transmembrane protein 199	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-3134486-2	chr11	3134372	3134572	+	1000.0	f0_balb.idr|f1_balb.idr	exon (NM_030207, exon 29 of 33)	exon (NM_030207, exon 29 of 33)	10451.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-118429172-2	chr4	118429072	118429272	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039176)	promoter-TSS (NM_001039176)	-529.0	NM_001039176	54325.0	Mm.282096	NM_019422	ENSMUSG00000006390	Elovl1	AA407424|BB151133|Ssc1	elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-43864655-4	chr13	43864563	43864763	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	79551.0	NM_001289915	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-24902265-5	chr10	24901988	24902188	+	937.386658	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027347, exon 19 of 29)	exon (NM_027347, exon 19 of 29)	-8576.0	NR_105870	102465545.0		NR_105870	ENSMUSG00000099181	Mir6905	Gm27879|mmu-mir-6905	microRNA 6905	ncRNA	0.718414783016336	0.12240579278447	0.117106088067433	0.402493035818783	0.566581789180519	0.123602347610824	0.118273793849982	0.406948098340641	-0.349631534722211	0.864363705712433	1
Merged-chr11-102289952-2	chr11	102289852	102290052	+	570.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001302506)	TTS (NM_001302506)	5013.0	NM_001302505	72053.0	Mm.101274	NM_028076	ENSMUSG00000034757	Tmub2	2010008E23Rik	transmembrane and ubiquitin-like domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-4609854-2	chr2	4609754	4609954	+	569.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 23 of 23)	intron (NM_001177843, intron 23 of 23)	42281.0	NM_026045	67229.0	Mm.38529	NM_026045	ENSMUSG00000039449	Prpf18	2810441A10Rik	pre-mRNA processing factor 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85470172-2	chr12	85470072	85470272	+	823.099976	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA7|LINE|L1	-3718.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-168002196-2	chr2	168002096	168002296	+	792.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080708, intron 2 of 21)	intron (NM_001080708, intron 2 of 21)	8397.0	NM_001080708	69553.0	Mm.68454	NM_001080708	ENSMUSG00000074577	Ripor3	2310033K02Rik|Fam65c|Gm124	RIPOR family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-120761908-2	chr5	120761808	120762008	+	563.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_145226, intron 8 of 15)	intron (NM_145226, intron 8 of 15)	-12060.0	NM_001347448	246728.0	Mm.260926	NM_145227	ENSMUSG00000032690	Oas2	Oasl11	2'-5' oligoadenylate synthetase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-90029396-8	chr7	90029407	90029607	+	984.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110365, intron 1 of 5)	intron (NR_110365, intron 1 of 5)	348.0	NR_110364	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-114815544-4	chr9	114815460	114815660	+	979.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027294, intron 1 of 3)	intron (NM_027294, intron 1 of 3)	28592.0	NM_027294	70031.0	Mm.150064	NM_027294	ENSMUSG00000041012	Cmtm8	2700018N07Rik|AA408515|Cklfsf8	CKLF-like MARVEL transmembrane domain containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-24433079-2	chr16	24432979	24433179	+	598.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 1 of 12)	MER33|DNA|hAT-Charlie	-15012.0	NM_001145952	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-35467312-1	chr8	35467212	35467412	+	749.0	f1_c57bl6.idr	3' UTR (NM_026067, exon 7 of 7)	3' UTR (NM_026067, exon 7 of 7)	28221.0	NM_026067	67276.0	Mm.207534	NM_026067	ENSMUSG00000031527	Eri1	3'hexo|3110010F15Rik|Thex1|eri-1	exoribonuclease 1	protein-coding	1.57323502306234	1.28062511746274	1.86072923519073	1.94993469757325	2.08855443588391	2.34655219064871	2.63472329415839	2.29658337624233	1.77878901718752	0.0628815321444983	0.372753272070005
Merged-chr17-35774084-2	chr17	35773984	35774184	+	633.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_045459, intron 1 of 2)	intron (NR_045459, intron 1 of 2)	1634.0	NR_045459	74601.0	Mm.410840	NR_045459	ENSMUSG00000092171	4833427F10Rik	-	RIKEN cDNA 4833427F10 gene	ncRNA	-0.0901182216038372	-0.439671089354128	-0.443344873904274	0.161559197814559	-0.45015053374165	-0.43884120497052	-0.442535692335768	-0.285258225981831	-2.54878387061742	0.319668555124695	1
Merged-chr14-121080868-2	chr14	121080768	121080968	+	590.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_134082, intron 1 of 26)	MTC|LTR|ERVL-MaLR	45294.0	NM_134082	223254.0	Mm.223980	NM_134082	ENSMUSG00000025555	Farp1	AW228844|BC030329|Cdep	FERM, RhoGEF (Arhgef) and pleckstrin domain protein 1 (chondrocyte-derived)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-21936096-4	chr3	21935983	21936183	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-140569.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4082481-2	chr16	4082381	4082581	+	884.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4671.0	NM_026508	68015.0	Mm.123366	NM_026508	ENSMUSG00000005981	Trap1	2410002K23Rik|HSP75	TNF receptor-associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-75778323-4	chr2	75778259	75778459	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-53818.0	NM_172666	228061.0	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-73700795-2	chr3	73700695	73700895	+	821.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_009738, exon 2 of 4)	exon (NM_009738, exon 2 of 4)	7620.0	NM_009738	12038.0	Mm.250719	NM_009738	ENSMUSG00000027792	Bche	C730038G20Rik	butyrylcholinesterase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-114402378-2	chr6	114402278	114402478	+	860.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001317126, intron 1 of 1)	intron (NM_001317126, intron 1 of 1)	-1288.0	NM_001252642	15465.0	Mm.333327	NM_008285	ENSMUSG00000053004	Hrh1	Bphs|H1R|HH1R|Hir	histamine receptor H1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150098182-1	chr4	150098082	150098282	+	607.0	f1_c57bl6.idr	intron (NM_177366, intron 1 of 3)	intron (NM_177366, intron 1 of 3)	10679.0	NM_177366	269604.0	Mm.219307	NM_177366	ENSMUSG00000047875	Gpr157	F730108M23Rik	G protein-coupled receptor 157	protein-coding	-0.893986561169655	-0.875744574464236	0.191235023404903	-0.88803707909448	-0.893095256885496	-0.872421296127899	-0.88349549973802	-0.887416687878218	-3.49744126941707	0.244297073838425	1
Merged-chr5-33432420-2	chr5	33432320	33432520	+	596.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011320, intron 1 of 1)	CpG	1670.0	NM_011320	672284.0		NM_011320	ENSMUSG00000029112	Nkx1-1	Nkx-1.1|Sax2	NK1 homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-23858259-2	chr10	23858142	23858342	+	788.0	f0_c57.idr|f1_balb.idr	intron (NM_011979, intron 3 of 6)	MMETn-int|LTR|ERVK	6780.0	NM_011979	26464.0	Mm.27334	NM_011979	ENSMUSG00000020010	Vnn3	-	vanin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-39525139-2	chr1	39525039	39525239	+	672.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-10562.0	NM_028043	52846.0	Mm.259421	NM_028043	ENSMUSG00000003135	Cnot11	2410015L18Rik|C40|D1Bwg0212e	CCR4-NOT transcription complex, subunit 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-108146755-2	chr3	108146655	108146855	+	626.666687	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010306)	promoter-TSS (NM_010306)	-603.0	NM_010306	14679.0	Mm.271703	NM_010306	ENSMUSG00000000001	Gnai3	AI158965|AW537698|Galphai3|Gnai-3	guanine nucleotide binding protein (G protein), alpha inhibiting 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3748902-1	chr4	3748802	3749002	+	668.5	f1_c57bl6.idr	intron (NM_001111096, intron 8 of 12)	intron (NM_001111096, intron 8 of 12)	33938.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98962412-3	chr11	98962303	98962503	+	694.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001176528, intron 1 of 7)	URR1A|DNA|hAT-Charlie	1932.0	NM_001176528	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-5787271-2	chr11	5787171	5787371	+	930.0833130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-1212.0	NM_001146309	13169.0	Mm.256925	NM_013810	ENSMUSG00000020476	Dbnl	Abp1|SH3P7|mAbp1	drebrin-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6943939-2	chr19	6943839	6944039	+	598.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285453, intron 2 of 3)	intron (NM_001285453, intron 2 of 3)	1377.0	NM_001285453	12015.0	Mm.4387	NM_007522	ENSMUSG00000024959	Bad	AI325008|Bbc2	BCL2-associated agonist of cell death	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78351778-4	chr15	78351689	78351889	+	953.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_007780)	TTS (NM_007780)	3190.0	NR_106137	102465776.0		NR_106137	ENSMUSG00000098996	Mir7676-1	Gm27600|mmu-mir-7676-1	microRNA 7676-1	ncRNA	3.20276580014911	2.75820138950129	1.89137865527368	2.57660087068569	3.54179711500567	4.29808677513672	3.25290578745345	2.95649247222869	1.49749261787761	0.0262730764696817	0.216782605662972
Merged-chr13-5889678-2	chr13	5889578	5889778	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28189.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-27435072-2	chr19	27434972	27435172	+	584.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13B|LTR|ERVK	5035.0	NR_027987	107372.0	Mm.17942	NM_175354		C030016D13Rik	AW413347	RIKEN cDNA C030016D13 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-22774379-4	chr2	22774300	22774500	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019456)	promoter-TSS (NM_019456)	73.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-17727089-5	chr10	17727036	17727236	+	885.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	3908.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52069318-2	chr13	52069218	52069418	+	675.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27423.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-94900372-2	chr16	94900272	94900472	+	559.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025584, intron 2 of 4)	Lx8b|LINE|L1	-43682.0	NM_001025590	16522.0	Mm.328720	NM_010606	ENSMUSG00000043301	Kcnj6	BIR1|GIRK2|KATP2|KCNJ7|Kir3.2|weaver|wv	potassium inwardly-rectifying channel, subfamily J, member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-61129804-2	chr18	61129704	61129904	+	689.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037859, intron 20 of 21)	intron (NM_001037859, intron 20 of 21)	12336.0	NR_105949	102466212.0		NR_105949	ENSMUSG00000098389	Mir6983	Gm27496|mmu-mir-6983	microRNA 6983	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-123925928-2	chr9	123925842	123926042	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42750.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-43915362-4	chr1	43915276	43915476	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18618.0	NM_001310540	22019.0	Mm.401675	NM_009418	ENSMUSG00000041763	Tpp2	TPP-2|TppII	tripeptidyl peptidase II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32139433-2	chr2	32139333	32139533	+	662.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11715.0	NM_172661	227723.0	Mm.25504	NM_172661	ENSMUSG00000039262	Prrc2b	5830434P21Rik|AI173903|Bat2l|Bat2l1|D430039P21|mKIAA0515	proline-rich coiled-coil 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-4840999-3	chr12	4840930	4841130	+	900.5238039999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016863, intron 1 of 3)	intron (NM_016863, intron 1 of 3)	565.0	NM_016863	14226.0	Mm.20453	NM_016863	ENSMUSG00000020635	Fkbp1b	12.6kDa|AW494148|FKBP12.6|calstabin2	FK506 binding protein 1b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98795823-4	chr11	98795719	98795919	+	964.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001361932, exon 1 of 3)	5' UTR (NM_001361932, exon 1 of 3)	303.0	NM_028722	74026.0	Mm.258352	NM_028722	ENSMUSG00000052915	Msl1	2810017F12Rik|4121402D02Rik|4930463F05Rik|AA682082|Msl-1	male specific lethal 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-12455575-2	chr19	12455505	12455705	+	688.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5174.0	NM_010821	17476.0	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	1.89375350094344	1.67832411803207	2.26571647870992	1.99560338980404	1.90935565034455	1.68967570762554	2.46190562032694	1.18735145760026	-0.188868592067761	0.85458633825277	0.998431161219273
Merged-chr11-48998056-2	chr11	48997956	48998156	+	607.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	-5810.0	NM_011579	21822.0	Mm.15793	NM_011579	ENSMUSG00000078922	Tgtp1	Gtp2|Irgb6|Mg21|Tgtp	T cell specific GTPase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-84181738-4	chr17	84181652	84181852	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D11|SINE|Alu	6195.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166773218-2	chr2	166773118	166773318	+	657.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20549.0	NM_023815	76367.0	Mm.330796	NM_023815	ENSMUSG00000042854	Trp53rkb	2810408M09Rik|4933401B08Rik|5630401H01Rik|Nori-2|PRPK|Tp53rk|Trp53rk|Trp53tk|mNori-2p	transformation related protein 53 regulating kinase B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-98929514-1	chr14	98929414	98929614	+	795.5	f0_balb.idr	Intergenic	B4A|SINE|B4	116622.0	NM_175245	76789.0	Mm.38912	NM_175245	ENSMUSG00000033186	Mzt1	2410129H14Rik|AI120158|Mozart1	mitotic spindle organizing protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-134572979-4	chr5	134572815	134573015	+	933.6416630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_106087)	TTS (NR_106087)	839.0	NR_106087	102465708.0		NR_106087	ENSMUSG00000106323	Mir7228	mmu-mir-7228	microRNA 7228	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-25140469-4	chr17	25140338	25140538	+	978.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001317404, intron 1 of 24)	intron (NM_001317404, intron 1 of 24)	3807.0	NM_001317404	26373.0	Mm.270587	NM_011930	ENSMUSG00000036636	Clcn7	ClC-7|D17Wsu51e	chloride channel, voltage-sensitive 7	protein-coding	5.35443544284311	4.97428464986952	5.52580809611052	5.28821944373454	5.11950745234883	5.00755674270173	4.98216673713931	4.62687843860415	-0.419719753215479	0.171365877790941	0.638921007375919
Merged-chr2-70503617-3	chr2	70503521	70503721	+	866.138855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040496, intron 1 of 2)	intron (NR_040496, intron 1 of 2)	-5198.0	NM_025744	66748.0	Mm.423014	NM_025744	ENSMUSG00000075302	Erich2	4933404M02Rik	glutamate rich 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150048589-3	chr4	150048510	150048710	+	894.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19844.0	NR_029751	723848.0		NR_029751	ENSMUSG00000065493	Mir34a	Mirn34a|mir-34a|mmu-mir-34a	microRNA 34a	ncRNA	1.10358210342787	1.54308173635649	1.88710941268755	1.54701232234113	1.56434126235384	0.820721898288266	0.80550743158128	0.792262004303651	-1.89230540659116	0.179008623880735	0.649697107310641
Merged-chr5-92606188-2	chr5	92606088	92606288	+	670.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_175096, exon 2 of 2)	3' UTR (NM_175096, exon 2 of 2)	3137.0	NM_175096	52331.0	Mm.21965	NM_175096	ENSMUSG00000047963	Stbd1	D530019K15Rik|D5Ertd593e	starch binding domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-45905854-2	chr1	45905754	45905954	+	597.416626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19740.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-31227122-2	chr17	31227022	31227222	+	730.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_177823, intron 6 of 13)	intron (NM_177823, intron 6 of 13)	19056.0	NM_177823	328795.0	Mm.387930	NM_177823	ENSMUSG00000042345	Ubash3a	5830413C03Rik|C330001M22|Sts-2|TULA|TULA-1	ubiquitin associated and SH3 domain containing, A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98781171-2	chr11	98781071	98781271	+	662.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-5794.0	NM_145434	217166.0	Mm.390397	NM_145434	ENSMUSG00000020889	Nr1d1	A530070C09Rik|R75201	nuclear receptor subfamily 1, group D, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167740266-2	chr2	167740166	167740366	+	813.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	49089.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-63919622-2	chr7	63919506	63919706	+	739.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001256311, intron 2 of 2)	intron (NM_001256311, intron 2 of 2)	2749.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-67128591-4	chr13	67128482	67128682	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172392, intron 1 of 3)	intron (NM_172392, intron 1 of 3)	354.0	NM_172392	268670.0	Mm.56274	NM_172392	ENSMUSG00000057396	Zfp759	BC028265|Rslcan-8|Rslcan8	zinc finger protein 759	protein-coding	5.30369433753524	5.13560600171108	5.59624001033572	4.28235071861689	4.99964380376513	4.81028731233753	5.29731217786384	5.15669731969174	-0.0937182338354994	0.785340510233084	0.998431161219273
Merged-chr15-79357713-4	chr15	79357606	79357806	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001304830, exon 3 of 3)	exon (NM_001304830, exon 3 of 3)	9304.0	NM_001304832	17133.0	Mm.86646	NM_010755	ENSMUSG00000042622	Maff	-	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein F (avian)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127613764-2	chr7	127613664	127613864	+	647.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001362197, intron 1 of 3)	intron (NM_001362197, intron 1 of 3)	669.0	NM_177226	320683.0	Mm.156718	NM_177226	ENSMUSG00000045639	Zfp629	9330199A09Rik|Znf629	zinc finger protein 629	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116828064-4	chr11	116827969	116828169	+	953.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026280)	promoter-TSS (NM_026280)	-23.0	NM_026280	67622.0	Mm.64962	NM_026280	ENSMUSG00000020814	Mxra7	1810057P16Rik|E130302J09Rik	matrix-remodelling associated 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-23990769-1	chr17	23990669	23990869	+	689.0	f1_c57bl6.idr	Intergenic	RLTR20B5_MM|LTR|ERVK	7331.0	NM_133731	70835.0	Mm.157351	NM_133731	ENSMUSG00000045027	Prss22	4733401N09Rik|BSSP-4|SP001LA	protease, serine 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-99417190-1	chr10	99417090	99417290	+	702.0	f0_balb.idr	Intergenic	Intergenic	153959.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-45248280-1	chr9	45248180	45248380	+	1000.0	f0_balb.idr	intron (NM_001198971, intron 4 of 4)	intron (NM_001198971, intron 4 of 4)	18427.0	NR_106054	102466803.0		NR_106054	ENSMUSG00000098361	Mir7086	Gm27643|mmu-mir-7086	microRNA 7086	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-58012316-3	chr13	58012215	58012415	+	656.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195075, intron 14 of 16)	intron (NM_001195075, intron 14 of 16)	10885.0	NR_030544	100124491.0		NR_030544	ENSMUSG00000077962	Mir874	Mirn874|mir-874|mmu-mir-874	microRNA 874	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-62364948-2	chr5	62364848	62365048	+	553.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus4|LINE|L1	401229.0	NM_178407	212285.0	Mm.244403	NM_178407	ENSMUSG00000037999	Arap2	Centd1|Gm148|mKIAA0580	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-90255097-4	chr3	90255036	90255236	+	948.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357152, intron 1 of 9)	intron (NM_001357152, intron 1 of 9)	1278.0	NM_001357152	74343.0	Mm.35627	NM_028881	ENSMUSG00000027936	Crtc2	4632407F12Rik|Torc2	CREB regulated transcription coactivator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-65294414-4	chr5	65294306	65294506	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011258, intron 8 of 24)	intron (NM_011258, intron 8 of 24)	41233.0	NM_011258	19687.0	Mm.148877	NM_011258	ENSMUSG00000029191	Rfc1	140kDa|Alp145|RFC140|Recc1	replication factor C (activator 1) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-41192128-2	chr4	41192028	41192228	+	670.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_026275, exon 5 of 5)	3' UTR (NM_026275, exon 5 of 5)	56107.0	NM_026275	67615.0	Mm.389540	NM_026275	ENSMUSG00000036241	Ube2r2	1200003M11Rik|Cdc34b|Ubc3b	ubiquitin-conjugating enzyme E2R 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-117314192-2	chr5	117314092	117314292	+	574.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5074.0	NM_001033311	231668.0	Mm.298603	NM_001033311	ENSMUSG00000066894	Vsig10	-	V-set and immunoglobulin domain containing 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-3646053-5	chr7	3645917	3646117	+	907.7333369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146176, intron 1 of 17)	intron (NM_146176, intron 1 of 17)	748.0	NM_146176	232791.0	Mm.358731	NM_146176	ENSMUSG00000035632	Cnot3	A930039N10Rik	CCR4-NOT transcription complex, subunit 3	protein-coding	1.00512442821057	0.716223608111412	0.702097626910743	1.06370470245635	1.46438011150374	1.4548941245068	0.705238735177587	1.88542258017145	2.41818540832089	0.101064413732683	0.494758606565247
Merged-chr15-88505964-3	chr15	88505841	88506041	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-94361.0	NM_027306	70073.0	Mm.45306	NM_027306	ENSMUSG00000054117	Zdhhc25	1700030J15Rik	zinc finger, DHHC domain containing 25	protein-coding	3.61827653098997	2.97164745993221	3.34346893648723	3.37023226050486	2.32424676655042	1.36353315757169	1.31214414224974	1.26539469687479	-3.51235664563315	0.000118181327456872	0.00349246198725997
Merged-chr3-107106208-4	chr3	107106099	107106299	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008417, exon 3 of 3)	3' UTR (NM_008417, exon 3 of 3)	4632.0	NM_008417	16490.0	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-80111335-8	chr12	80111295	80111495	+	786.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007564, intron 1 of 1)	intron (NM_007564, intron 1 of 1)	1618.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-80155827-4	chr11	80155745	80155945	+	998.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172133, intron 2 of 10)	intron (NM_172133, intron 2 of 10)	1683.0	NM_172133	216991.0	Mm.341520	NM_172133	ENSMUSG00000020709	Adap2	Centa2	ArfGAP with dual PH domains 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-112433563-4	chr2	112433463	112433663	+	985.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21462.0	NM_133749	73024.0	Mm.268027	NM_133749	ENSMUSG00000055943	Emc7	2900064A13Rik|AI451465|ORF3|c11orf3	ER membrane protein complex subunit 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-17914789-4	chr13	17914702	17914902	+	834.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019491, intron 1 of 4)	intron (NM_019491, intron 1 of 4)	29415.0	NM_019491	56044.0	Mm.27348	NM_019491	ENSMUSG00000008859	Rala	3010001O15Rik|AW322615|Ral|Rasl1	v-ral simian leukemia viral oncogene A (ras related)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-27677338-1	chr8	27677238	27677438	+	670.0	f0_balb.idr	Intergenic	B2_Mm2|SINE|B2	229668.0	NM_027618	70952.0	Mm.158160	NM_026256	ENSMUSG00000063932	Poteg	4921537P18Rik|4930456F22Rik|Gsarp1|Gsarp2	POTE ankyrin domain family, member G	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-19567071-1	chr4	19566971	19567171	+	646.666687	f0_balb.idr	intron (NM_027769, intron 1 of 15)	PB1D9|SINE|Alu	3037.0	NM_027769	70568.0	Mm.38390	NM_027769	ENSMUSG00000028228	Cpne3	5430428M23Rik|5730450C07Rik|C85108|CPN3	copine III	protein-coding	0.404089268940686	0.268992101262734	1.17627942296183	0.437068050874328	0.245478983034795	0.270818391179749	1.00270283493153	0.440494700713606	-0.520069161354744	0.773353663514056	1
Merged-chr15-38628778-2	chr15	38628641	38628841	+	554.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C-int|LTR|ERVK	-33163.0	NM_025494	66335.0	Mm.276618	NM_025494	ENSMUSG00000022295	Atp6v1c1	1700025B18Rik|U13839	ATPase, H+ transporting, lysosomal V1 subunit C1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-133382262-3	chr1	133382186	133382386	+	722.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011439)	TTS (NM_011439)	18714.0	NM_175443	214253.0	Mm.52111	NM_175443	ENSMUSG00000070644	Etnk2	4933417N20Rik|AI197444|EKI 2|Eki2|Tuc1	ethanolamine kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-10405854-2	chr9	10405754	10405954	+	550.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001170787, intron 3 of 24)	intron (NM_001170787, intron 3 of 24)	498872.0	NM_001033359	244682.0	Mm.187021	NM_001033359	ENSMUSG00000039488	Cntn5	6720426O10Rik|A830025P08Rik|Gm507|NB-2	contactin 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-119480183-11	chr6	119480175	119480375	+	914.636353	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_133940, exon 1 of 1)	exon (NM_133940, exon 1 of 1)	607.0	NM_133940	101358.0	Mm.125477	NM_133940	ENSMUSG00000030019	Fbxl14	AW322056|Fbx14l	F-box and leucine-rich repeat protein 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72147790-2	chr6	72147690	72147890	+	782.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001035228, intron 5 of 6)	MARNA|DNA|TcMar-Mariner	-24593.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120071247-4	chr11	120071132	120071332	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009734, intron 13 of 25)	intron (NM_009734, intron 13 of 25)	15595.0	NM_009734	12009.0	Mm.2556	NM_009734	ENSMUSG00000039781	Cep131	AZ1|Azi|Azi1	centrosomal protein 131	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-87531916-6	chr17	87531896	87532096	+	928.944458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-85061.0	NM_007589	12314.0	Mm.329243	NM_007589	ENSMUSG00000036438	Calm2	1500001E21Rik|AL024017|Cam2|CamC	calmodulin 2	protein-coding	-0.175774183561575	-0.542125079185373	-0.545915302996873	-0.548837904724068	0.17747807483739	-0.541270378880893	-0.545079548755944	-0.548327439143341	1.23357230073761	0.661647285376853	1
Merged-chr1-178316050-2	chr1	178315950	178316150	+	631.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(A)n|Simple_repeat|Simple_repeat	-3103.0	NM_025511	66359.0	Mm.489720	NM_025511	ENSMUSG00000026500	Cox20	2310005N03Rik|Fam36a	COX20 Cox2 chaperone	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-21579691-4	chr17	21579605	21579805	+	933.9833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357347, intron 4 of 6)	intron (NM_001357347, intron 4 of 6)	12727.0	NM_001357347	381066.0	Mm.441097	NM_001002008	ENSMUSG00000067931	Zfp948	-	zinc finger protein 948	protein-coding	0.181899016577912	0.688281467447218	0.194467462468485	0.611579995732954	0.183066615915734	0.697870925550627	0.195817202736382	0.617509617649954	0.0344839350810152	0.986179003369437	1
Merged-chr2-152080933-4	chr2	152080830	152081030	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001160410)	promoter-TSS (NM_001160410)	-599.0	NM_001160410	545474.0	Mm.214317	NM_001160410	ENSMUSG00000060257	Scrt2	AW060659	scratch family zinc finger 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-97178734-2	chr7	97178640	97178840	+	542.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162477, intron 1 of 9)	L1Md_F2|LINE|L1	96989.0	NM_010248	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-55965844-2	chr16	55965744	55965944	+	832.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024218)	promoter-TSS (NM_024218)	-431.0	NM_024218	68193.0	Mm.29221	NM_024218	ENSMUSG00000098274	Rpl24	0610008L05Rik|Bst	ribosomal protein L24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-55828491-2	chr13	55828391	55828591	+	602.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_011097, exon 2 of 3)	exon (NM_011097, exon 2 of 3)	2934.0	NM_011097	18740.0	Mm.135195	NM_011097	ENSMUSG00000021506	Pitx1	Bft|P-OTX|Potx|Ptx1	paired-like homeodomain transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24685727-2	chr17	24685627	24685827	+	853.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011522, exon 4 of 4)	3' UTR (NM_011522, exon 4 of 4)	4222.0	NM_011522	20974.0	Mm.26032	NM_011522	ENSMUSG00000007021	Syngr3	-	synaptogyrin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-94835370-3	chr17	94835271	94835471	+	730.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045963)	promoter-TSS (NR_045963)	-572.0	NR_045963	100038746.0	Mm.456686	NR_045963	ENSMUSG00000066057	Gm1976	100038868	predicted gene 1976	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-128436291-3	chr8	128436193	128436393	+	690.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358959, intron 6 of 16)	intron (NM_001358959, intron 6 of 16)	77052.0	NR_035436	100316680.0		NR_035436	ENSMUSG00000084523	Mir1903	Mirn1903|mmu-mir-1903	microRNA 1903	ncRNA	-2.05752322593321	-2.15521190974092	-2.16307242109104	-2.16952927915413	-2.17938029103484	-2.15350850414045	-2.16129297361887	-2.16837350464794	-0.683654500252594	0.846597994014493	1
Merged-chr15-97112019-2	chr15	97111919	97112119	+	674.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55225.0	NR_155278	102635594.0	Mm.392594	NR_155278	ENSMUSG00000116295	Gm32885	-	predicted gene, 32885	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-122852904-4	chr6	122852826	122853026	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009779, intron 1 of 1)	MTD|LTR|ERVL-MaLR	3231.0	NM_009779	12267.0	Mm.2408	NM_009779	ENSMUSG00000040552	C3ar1	AZ3B|C3AR|HNFAG09	complement component 3a receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135939532-1	chr4	135939432	135939632	+	663.0	f1_balb.idr	3' UTR (NM_024243, exon 8 of 8)	3' UTR (NM_024243, exon 8 of 8)	-6916.0	NM_008254	15356.0	Mm.482102	NM_008254	ENSMUSG00000028672	Hmgcl	AW476067|HL	3-hydroxy-3-methylglutaryl-Coenzyme A lyase	protein-coding	-1.0433167833895	-1.02384614025209	-1.0354241979555	-1.03992149915231	-0.471480376444205	-1.02133712684873	-0.855046535079835	-1.03956363812707	2.84354138876931	0.366125231135294	1
Merged-chr5-122821380-4	chr5	122821267	122821467	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021505)	promoter-TSS (NM_021505)	-25.0	NM_001289519	59008.0	Mm.332667	NM_021505	ENSMUSG00000029472	Anapc5	2510006G12Rik|AA408751|AA536819|AA986414|APC5|Anpc5	anaphase-promoting complex subunit 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101900503-1	chr7	101900403	101900603	+	1000.0	f0_balb.idr	TTS (NM_027532)	TTS (NM_027532)	3282.0	NM_001282088	791260.0	Mm.475469	NM_001081679	ENSMUSG00000078630	Tomt	Comt2|F930017I19Rik	transmembrane O-methyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41335910-4	chr19	41335803	41336003	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 2 of 16)	intron (NM_031376, intron 2 of 16)	49167.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	5.2632847763035	4.88281615268822	3.95515498964274	5.12470099234489	5.29940733152854	4.82057113860848	4.14039734073026	5.17754644332462	0.045620327583625	0.907802212208049	0.998431161219273
Merged-chr4-53075153-2	chr4	53075053	53075253	+	861.333374	f1_balb.idr|f1_c57bl6.idr	exon (NM_013454, exon 22 of 50)	exon (NM_013454, exon 22 of 50)	63273.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-94073489-4	chr11	94073400	94073600	+	735.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025430, intron 5 of 25)	B3|SINE|B2	29295.0	NM_001025429	70834.0	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118747506-1	chr9	118747406	118747606	+	550.0	f1_balb.idr	intron (NM_001113514, intron 1 of 13)	MIR|SINE|MIR	35814.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	1.10950764386056	0.553193803181088	0.53962902098148	0.528944765801289	1.41465542160263	1.83560872868456	0.542647589702487	0.920509752972525	2.44683180631677	0.136779515542651	0.577075563141574
Merged-chr4-88698973-4	chr4	88698898	88699098	+	905.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7730.0	NM_008336	15974.0	Mm.377093	NM_008336	ENSMUSG00000100079	Ifnab	-	interferon alpha B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-61493281-2	chr11	61493181	61493381	+	835.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291037, intron 1 of 5)	MIRb|SINE|MIR	980.0	NM_001361989	23939.0	Mm.38172	NM_011841	ENSMUSG00000001034	Mapk7	BMK-1|BMK1|ERK-5|ERK5|Erk5-T|PRKM7|b2b2346Clo	mitogen-activated protein kinase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27281158-4	chr2	27281069	27281269	+	820.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_133905, intron 18 of 29)	intron (NR_133905, intron 18 of 29)	-33866.0	NM_138665	192166.0	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128366154-2	chr10	128366054	128366254	+	632.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081040, intron 2 of 4)	intron (NM_001081040, intron 2 of 4)	3883.0	NM_001081040	210582.0	Mm.296876	NM_001081040	ENSMUSG00000039914	Coq10a	Gm1	coenzyme Q10A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100931747-4	chr11	100931641	100931841	+	954.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_213660, intron 1 of 23)	intron (NM_213660, intron 1 of 23)	7799.0	NM_213660	20848.0	Mm.249934	NM_011486	ENSMUSG00000004040	Stat3	1110034C02Rik|AW109958|Aprf	signal transducer and activator of transcription 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-140531727-3	chr1	140531643	140531843	+	623.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081027, intron 20 of 27)	intron (NM_001081027, intron 20 of 27)	124659.0	NR_040604	75910.0	Mm.483845	NR_040604	ENSMUSG00000102368	4930590L20Rik	-	RIKEN cDNA 4930590L20 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-131840732-2	chr4	131840632	131840832	+	692.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2454.0	NM_001083119	19273.0	Mm.4860	NM_011214	ENSMUSG00000028909	Ptpru	Ftp-1|PCP-2|PTP|PTP-lambda|PTPlambda|Pcp2|Ptpf|Ptprl|R-PTP-U|R-PTP-psi|RPTPlambda	protein tyrosine phosphatase, receptor type, U	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34972299-5	chr17	34972157	34972357	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013558)	promoter-TSS (NM_013558)	-101.0	NM_010479	193740.0	Mm.6388	NM_010479	ENSMUSG00000091971	Hspa1a	Hsp70-3|Hsp70.3|Hsp72|hsp68|hsp70A1	heat shock protein 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-57643292-5	chr9	57643194	57643394	+	578.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304761, intron 2 of 14)	intron (NM_001304761, intron 2 of 14)	2359.0	NM_007783	12988.0	Mm.21974	NM_007783	ENSMUSG00000032312	Csk	AW212630|p50CSK	c-src tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-32113748-4	chr16	32113666	32113866	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13964.0	NM_025892	66994.0	Mm.22990	NM_025892	ENSMUSG00000035790	Cep19	1500031L02Rik|AI428934|AL022620	centrosomal protein 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-13237241-1	chr14	13237141	13237341	+	541.0	f0_balb.idr	intron (NR_121588, intron 2 of 3)	intron (NR_121588, intron 2 of 3)	47397.0	NR_121589	328354.0	Mm.252404	NM_177813	ENSMUSG00000051729	Gm5087	C630025C03|EG328354	predicted gene 5087	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-144011398-4	chr2	144011298	144011498	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024281)	promoter-TSS (NM_024281)	-135.0	NM_024281	81910.0	Mm.13705	NM_024281	ENSMUSG00000027422	Rrbp1	1700087N07Rik|5730465C04Rik|ES/130|mKIAA1398|mRRp0|mRRp1.8|mRRp10|mRRp15a|mRRp15b|mRRp16.8|mRRp2|mRRp41|mRRp47|mRRp5.4|p180	ribosome binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-24577487-4	chr5	24577325	24577525	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001190443)	promoter-TSS (NM_001190443)	42.0	NM_013853	27407.0	Mm.21629	NM_013853	ENSMUSG00000028953	Abcf2	0710005O05Rik|Drr3|E430001O06	ATP-binding cassette, sub-family F (GCN20), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-152089343-2	chr2	152089243	152089443	+	853.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001160410, intron 1 of 1)	intron (NM_001160410, intron 1 of 1)	7814.0	NM_001160410	545474.0	Mm.214317	NM_001160410	ENSMUSG00000060257	Scrt2	AW060659	scratch family zinc finger 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-26032261-2	chr16	26032161	26032361	+	724.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173379, intron 1 of 14)	RMER19C|LTR|ERVK	73523.0	NM_173379	210530.0	Mm.326869	NM_173379	ENSMUSG00000038168	P3h2	4832416N06|AW553532|Leprel1|Mlat4	prolyl 3-hydroxylase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-127267033-4	chr6	127266938	127267138	+	799.783325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	40929.0	NR_073373	232386.0	Mm.257367	NR_073373	ENSMUSG00000107153	Gm38404	D130058E03	predicted gene, 38404	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-20888320-2	chr5	20888220	20888420	+	640.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	5867.0	NM_177601	212090.0	Mm.347525	NM_177601	ENSMUSG00000045435	Tmem60	BC027828	transmembrane protein 60	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88490443-2	chr3	88490343	88490543	+	554.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001002011, intron 1 of 11)	intron (NM_001002011, intron 1 of 11)	2869.0	NM_019390	16905.0	Mm.243014	NM_019390	ENSMUSG00000028063	Lmna	Dhe	lamin A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-87017922-4	chr3	87017814	87018014	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18574.0	NM_007639	12479.0	Mm.1894	NM_007639	ENSMUSG00000028076	Cd1d1	AI747460|CD1.1|Cd1a|Cd1d|Ly-38	CD1d1 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-124910787-1	chr3	124910687	124910887	+	640.0	f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	-329696.0	NR_015460	384775.0	Mm.489851	NR_015460	ENSMUSG00000039174	1700003H04Rik	4930538K10Rik|4933400D22Rik	RIKEN cDNA 1700003H04 gene	ncRNA	0.615128174761824	1.15025986654388	0.654707857256132	0.640176614497294	0.618932403080716	1.85951034016895	2.04176901610362	1.49791896527528	3.56119353911647	0.026629282257935	0.218734455863102
Merged-chr4-145258228-4	chr4	145258132	145258332	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11362.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65141648-2	chr9	65141548	65141748	+	723.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357257, intron 1 of 13)	CpG	494.0	NM_001357257	19289.0	Mm.41529	NM_008988	ENSMUSG00000032394	Igdcc3	2810401C09Rik|AI851425|Punc|WI-14920	immunoglobulin superfamily, DCC subclass, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-100646624-1	chr9	100646524	100646724	+	703.0	f1_c57bl6.idr	intron (NM_009282, intron 1 of 33)	PB1D10|SINE|Alu	3176.0	NM_001357265	20842.0	Mm.42135	NM_009282	ENSMUSG00000037286	Stag1	AU045003|SA-1|Scc3	stromal antigen 1	protein-coding	0.52763458438001	-0.235789171399516	-0.24031762198983	0.0581704070489227	0.021462581887935	-0.234767809474182	-0.239319197261472	-0.243198945533831	-2.14787102057744	0.378468400684996	1
Merged-chr1-171226440-4	chr1	171226346	171226546	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_131173)	TTS (NR_131173)	1392.0	NM_013474	11807.0	Mm.389209	NM_013474	ENSMUSG00000005681	Apoa2	Alp-2|Apo-AII|ApoA-II|ApoAII|Apoa-2|Hdl-1	apolipoprotein A-II	protein-coding	2.7548565322991	1.56234897554909	3.74330140749154	2.46066790487255	3.33931401852992	3.02237988849149	2.04008690405925	3.09765042631358	0.15228303411455	0.851756039609686	0.998431161219273
Merged-chr4-32161040-4	chr4	32160921	32161121	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A3|LTR|ERVL-MaLR	196914.0	NM_172688	26409.0	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding	3.34781483599918	3.91776924154701	3.14299396287585	4.33636250523717	4.3225887417806	4.14943425197721	2.74629074410382	3.83864406693519	0.169453777734237	0.760790278067522	0.998431161219273
Merged-chr10-61151595-3	chr10	61151482	61151682	+	909.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-3898.0	NM_001316674	20397.0	Mm.412319	NM_009163	ENSMUSG00000020097	Sgpl1	AI428538|D10Xrf456|S1PL|Spl	sphingosine phosphate lyase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-72846052-1	chr12	72845952	72846152	+	668.0	f1_balb.idr	Intergenic	Intergenic	71713.0	NM_029444	75801.0	Mm.242892	NM_029444	ENSMUSG00000021098	4930447C04Rik	4921504I02Rik|A930035O15Rik|Six6OS|Six6as|Six6os1	RIKEN cDNA 4930447C04 gene	protein-coding	0.609792162922557	2.29690810208499	0.677312590958464	0.652966871703998	0.616454492425936	2.41138298736993	0.684067550609529	2.6439613691829	1.37603954080535	0.673667968543893	0.99440487726309
Merged-chr15-58980363-4	chr15	58980266	58980466	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144800, intron 3 of 14)	intron (NM_144800, intron 3 of 14)	46556.0	NM_023172	66218.0	Mm.322294	NM_023172	ENSMUSG00000022354	Ndufb9	1190008J14Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-108459412-4	chr4	108459331	108459531	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175472)	promoter-TSS (NM_175472)	5.0	NM_175472	230594.0	Mm.25181	NM_175472	ENSMUSG00000034610	Zcchc11	6030404K05Rik|9230115F04Rik|PPAPD3|mKIAA0191	zinc finger, CCHC domain containing 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-74339337-7	chr17	74339259	74339459	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001162870, exon 1 of 17)	exon (NM_001162870, exon 1 of 17)	372.0	NM_016962	50850.0	Mm.19804	NM_016962	ENSMUSG00000024068	Spast	Spg4|mKIAA1083	spastin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167921116-2	chr2	167921016	167921216	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11211.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-76485838-2	chr12	76485738	76485938	+	545.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41341.0	NR_028520	100041694.0	Mm.259350	NR_028520	ENSMUSG00000073000	Gm10451	-	predicted gene 10451	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-53668606-2	chr9	53668506	53668706	+	711.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1099.0	NM_027807	75717.0	Mm.218910	NM_027807	ENSMUSG00000032030	Cul5	4921514I20Rik|8430423K24Rik|AI852817|C030032G03Rik|C330021I08Rik|VACM-1|VACM1	cullin 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-80812092-4	chr12	80812008	80812208	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001242419, intron 1 of 6)	intron (NM_001242419, intron 1 of 6)	21576.0	NM_001242419	217684.0	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-13055328-3	chr17	13055244	13055444	+	839.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3064.0	NM_001013832	436440.0	Mm.335670	NM_001013832	ENSMUSG00000071311	Gpr31b	12-HETER|GPR31c(t)|Gpr31|Gpr31c	G protein-coupled receptor 31, D17Leh66b region	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-37552005-2	chr9	37551905	37552105	+	684.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_022029, intron 1 of 3)	intron (NM_022029, intron 1 of 3)	740.0	NM_022029	64011.0	Mm.335065	NM_022029	ENSMUSG00000053310	Nrgn	0710001B06Rik|AI838505|NG|NG/RC3|Pss1|R75334|RC3	neurogranin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-42984963-4	chr5	42984859	42985059	+	840.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-248504.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-14184556-3	chr2	14184461	14184661	+	875.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081310, intron 1 of 3)	intron (NM_001081310, intron 1 of 3)	10037.0	NM_001081310	625286.0	Mm.158781	NM_001081310	ENSMUSG00000061531	Tmem236	2010003H20Rik|Fam23a|Gm613	transmembrane protein 236	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-83157420-3	chr15	83157281	83157481	+	673.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029787, intron 8 of 8)	intron (NM_029787, intron 8 of 8)	7736.0	NR_004432	104307.0	Mm.471434	NR_004432	ENSMUSG00000065176	Rnu12	-	RNA U12, small nuclear	snRNA	0.661641865174657	0.261854571843996	0.454174181424698	0.24658774738236	0.547722286847811	1.36024746714161	0.459852647491816	0.24776008635688	1.79360614383757	0.314415222478917	1
Merged-chr2-117961734-2	chr2	117961634	117961834	+	818.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_126479, intron 8 of 9)	L1M5|LINE|L1	139806.0	NR_040631	73938.0	Mm.399107	NR_040631	ENSMUSG00000086221	4930412B13Rik	-	RIKEN cDNA 4930412B13 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166467319-4	chr2	166467218	166467418	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19867.0	NR_015558	319684.0	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-105757926-2	chr12	105757826	105758026	+	670.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_030187, intron 12 of 17)	intron (NM_030187, intron 12 of 17)	-26771.0	NM_011112	18789.0	Mm.255877	NM_011112	ENSMUSG00000021111	Papola	Pap|PapIII|Plap	poly (A) polymerase alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100961320-4	chr7	100961233	100961433	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183168, intron 1 of 2)	intron (NM_183168, intron 1 of 2)	3033.0	NM_183168	233571.0	Mm.235193	NM_183168	ENSMUSG00000048779	P2ry6	2010204J23Rik|P2Y6	pyrimidinergic receptor P2Y, G-protein coupled, 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-117956107-1	chr5	117956007	117956207	+	540.0	f1_c57bl6.idr	3' UTR (NM_008712, exon 28 of 28)	3' UTR (NM_008712, exon 28 of 28)	-20663.0	NM_145564	231670.0	Mm.21912	NM_145564	ENSMUSG00000032898	Fbxo21	2810425J22Rik|AU016673	F-box protein 21	protein-coding	0.289862820123542	0.441541103579097	-0.155757479310393	-0.159212598210859	-0.164082936431889	-0.150254800132603	0.0192927531338515	0.00171263748005405	-1.92191474321676	0.395907688329422	1
Merged-chr1-156989729-1	chr1	156989629	156989829	+	934.0	f0_balb.idr	Intergenic	Lx10|LINE|L1	-50103.0	NM_001357391	78255.0	Mm.28376	NM_023884	ENSMUSG00000026594	Ralgps2	1810020P17Rik|2210408F11Rik|4921528G01Rik|9130014M22Rik|AU043409|AW046161	Ral GEF with PH domain and SH3 binding motif 2	protein-coding	1.91116893769391	1.28108808602992	1.73816835471824	1.21377331340075	2.54573126181295	2.78053652494932	3.06516489529392	2.59645914801109	2.94081864496945	0.00227386088780173	0.0367019501325271
Merged-chr10-119064753-2	chr10	119064653	119064853	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14254.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-4866267-4	chr7	4866173	4866373	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026158)	promoter-TSS (NM_026158)	-94.0	NM_026158	67441.0	Mm.41385	NM_026158	ENSMUSG00000052605	Isoc2b	0610042E07Rik|AI553388|Isoc2	isochorismatase domain containing 2b	protein-coding	5.39390764547687	5.75783093865268	5.83438535480349	5.58773505015813	5.47616037175354	4.11586995419315	4.88928896094442	6.08554612621346	-0.358072039321238	0.319564752285692	0.821951596143819
Merged-chr15-47153888-1	chr15	47153788	47153988	+	566.0	f1_balb.idr	Intergenic	Lx2|LINE|L1	530583.0	NR_045811	75281.0	Mm.159487	NR_045811	ENSMUSG00000051198	4930548G14Rik	-	RIKEN cDNA 4930548G14 gene	ncRNA	0.702017148214562	0.329967839605022	0.915626876246008	0.316423898379255	0.711168535038423	1.0916959073054	0.324024702113948	0.317459018225216	0.35675953211076	0.848484104591974	1
Merged-chr4-123990874-4	chr4	123990774	123990974	+	998.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	73441.0	NM_017475	54170.0	Mm.220922	NM_017475	ENSMUSG00000028646	Rragc	AU041672|Gtr2|RAGC|TIB929|YGR163W	Ras-related GTP binding C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-122311309-2	chr7	122311209	122311409	+	789.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001316672, intron 2 of 16)	intron (NM_001316672, intron 2 of 16)	22184.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-88504873-2	chr5	88504773	88504973	+	925.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_017468, exon 10 of 10)	3' UTR (NM_017468, exon 10 of 10)	16898.0	NM_017468	13801.0	Mm.8014	NM_017468	ENSMUSG00000029286	Enam	abte	enamelin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-62373233-2	chr9	62373131	62373331	+	647.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_009672, intron 3 of 6)	intron (NM_009672, intron 3 of 6)	31888.0	NM_009672	11737.0	Mm.269088	NM_009672	ENSMUSG00000032249	Anp32a	Anp32|I1PP2A|LANP|PHAP1|W91701|pp32	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-72908973-3	chr17	72908873	72909073	+	920.694458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TAAA)n|Simple_repeat|Simple_repeat	-9332.0	NM_029999	77889.0	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	0.256265705515323	0.0206645584378787	0.0158546568001441	0.515658866072085	0.262563058503613	0.0217512664554173	0.0169139769870017	0.522323475353815	0.0327304273181811	0.987640786525468	1
Merged-chr9-47721226-1	chr9	47721126	47721326	+	617.5	f0_c57.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	96982.0	NR_046048	100038460.0	Mm.447649	NR_046048		Gm10677	-	predicted gene 10677	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-6534649-2	chr2	6534592	6534792	+	846.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	181956.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-103469633-4	chr14	103469555	103469755	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43686.0	NM_022886	64929.0	Mm.244003	NM_022886	ENSMUSG00000022123	Scel	9230114I02Rik	sciellin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-100119581-4	chr15	100119458	100119658	+	989.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159361, intron 2 of 37)	intron (NM_001159361, intron 2 of 37)	-34838.0	NM_172819	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141901831-2	chr7	141901731	141901931	+	800.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347562, intron 1 of 6)	intron (NM_001347562, intron 1 of 6)	630.0	NM_023764	54473.0	Mm.103551	NM_023764	ENSMUSG00000025139	Tollip	4930403G24Rik|4931428G15Rik	toll interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-49244473-2	chr13	49244373	49244573	+	677.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028340, intron 1 of 4)	intron (NM_028340, intron 1 of 4)	3821.0	NM_001360772	66329.0	Mm.34308	NM_025491	ENSMUSG00000021384	Susd3	1700017I11Rik|2810440J20Rik	sushi domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-151851380-4	chr4	151851306	151851506	+	790.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081557, intron 1 of 23)	B4|SINE|B4	10362.0	NM_001081557	100072.0	Mm.318846	NM_001081557	ENSMUSG00000014592	Camta1	1810059M14Rik|2310058O09Rik|AI316882|AW987475|mKIAA0833	calmodulin binding transcription activator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-100916997-4	chr3	100916936	100917136	+	905.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5457.0	NM_001165952	229644.0	Mm.189351	NM_194343	ENSMUSG00000033233	Trim45	4921530N01Rik	tripartite motif-containing 45	protein-coding	3.08712746471197	2.85056282469095	3.04139896237191	2.14678315936632	3.11204845514057	1.59004399514227	2.53329185721479	3.1273287441906	-0.179245709034297	0.820786021298897	0.998431161219273
Merged-chr15-31460141-1	chr15	31460041	31460241	+	544.0	f1_c57bl6.idr	intron (NM_172606, intron 25 of 25)	intron (NM_172606, intron 25 of 25)	-6452.0	NM_145852	252967.0	Mm.436668	NM_145852	ENSMUSG00000022236	Ropn1l	ASP|AV047578|Akapasp	ropporin 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46891669-2	chr8	46891569	46891769	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-95218.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-85075321-2	chr8	85075221	85075421	+	564.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001039514)	TTS (NM_001039514)	3564.0	NM_001039514	330817.0	Mm.193086	NM_201408	ENSMUSG00000060038	Dhps	Dhs	deoxyhypusine synthase	protein-coding	-0.550428070058364	-0.538583297576537	-0.542463925884104	-0.545457908994931	-0.060248596376744	0.0965107972872166	-0.541608027869283	-0.54493487009686	3.4886071003869	0.201492940287096	1
Merged-chr8-104372194-2	chr8	104372094	104372294	+	681.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_153582, intron 1 of 3)	B1_Mur2|SINE|Alu	23613.0	NM_153582	97487.0	Mm.29658	NM_153582	ENSMUSG00000096188	Cmtm4	Cklfsf4|D19397|Gm9853	CKLF-like MARVEL transmembrane domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-83921419-4	chr10	83921334	83921534	+	911.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	179263.0	NR_152790	102637349.0	Mm.402869	NR_152790	ENSMUSG00000111049	Gm34184	-	predicted gene, 34184	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-112927509-4	chr13	112927430	112927630	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172594)	promoter-TSS (NM_172594)	-150.0	NM_028151	72198.0	Mm.291029	NM_028151	ENSMUSG00000016018	Skiv2l2	2610528A15Rik|Mtrex|mKIAA0052	superkiller viralicidic activity 2-like 2 (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-38342470-4	chr6	38342411	38342611	+	968.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028864, intron 1 of 8)	intron (NM_028864, intron 1 of 8)	12092.0	NM_001347122	78781.0	Mm.25243	NM_028421	ENSMUSG00000029826	Zc3hav1	1200014N16Rik|2900058M19Rik|9130009D18Rik|9830115L13Rik|ARTD13|D6Bwg1452e|ZAP	zinc finger CCCH type, antiviral 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-59450407-4	chr4	59450303	59450503	+	876.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11770.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-119140329-4	chr4	119140232	119140432	+	925.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31587.0	NM_011400	20525.0	Mm.21002	NM_011400	ENSMUSG00000028645	Slc2a1	Glut-1|Glut1	solute carrier family 2 (facilitated glucose transporter), member 1	protein-coding	0.976264815453788	1.83751158631107	0.623984052914119	1.35200449956149	0.586594101626768	0.64720099581384	0.628238468262549	2.2285725700315	0.00350239593102859	0.998199872744196	0.999477195380955
Merged-chr8-41041879-3	chr8	41041774	41041974	+	900.8110960000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001005865)	promoter-TSS (NM_001005865)	57.0	NM_001005865	102103.0	Mm.149438	NM_001005863	ENSMUSG00000045636	Mtus1	AI481402|ATBP135|Atip1|B430010I23Rik|B430305I03Rik|C85752|Cctsg1-440|MD44|MTSG1|mKIAA1288	mitochondrial tumor suppressor 1	protein-coding	4.75779755566789	3.61615690435824	4.14228703521372	3.64191493732571	4.28224101217328	2.88169239119551	3.69644202907605	3.66074669201512	-0.558793151963268	0.290702315647586	0.79558539761399
Merged-chr1-62707143-3	chr1	62707056	62707256	+	773.527771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077404, intron 1 of 16)	intron (NM_001077404, intron 1 of 16)	3839.0	NM_001077407	18187.0	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-9886822-4	chr3	9886718	9886918	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER20|DNA|hAT-Charlie	-53139.0	NM_001195031	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-33578139-3	chr12	33578049	33578249	+	931.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	148525.0	NM_172253	28071.0	Mm.196472	NM_172253	ENSMUSG00000020561	Twistnb	2410173G11|2810024J17Rik|D16Wsu83e	twist basic helix-loop-helix transcription factor 1 neighbor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-30047247-2	chr6	30047147	30047347	+	691.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010938)	promoter-TSS (NM_010938)	-741.0	NM_001164228	18181.0	Mm.259258	NM_010938	ENSMUSG00000058440	Nrf1	C87038|D6Ertd415e	nuclear respiratory factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-119366362-3	chr13	119366269	119366469	+	947.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008710, exon 12 of 17)	exon (NM_008710, exon 12 of 17)	42642.0	NM_008710	18115.0	Mm.132584	NM_008710	ENSMUSG00000116207	Nnt	4930423F13Rik|AI323702|BB168308	nicotinamide nucleotide transhydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-45699052-4	chr11	45698944	45699144	+	986.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16A2|LTR|ERVL	-109039.0	NR_045876	100009664.0	Mm.415439	NR_045876		F630206G17Rik	-	RIKEN cDNA F630206G17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124966132-4	chr6	124966019	124966219	+	885.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164089)	promoter-TSS (NM_001164089)	-581.0	NM_001164089	26894.0	Mm.244536	NM_012003	ENSMUSG00000030127	Cops7a	D6Ertd35e|SGN7a	COP9 signalosome subunit 7A	protein-coding	2.85458962909464	2.58255010200832	1.81637117780772	3.00269580482694	2.63590829593054	2.8426417167274	2.63946674578095	2.76593156666755	0.145943521124033	0.84524483410895	0.998431161219273
Merged-chr15-29020918-2	chr15	29020818	29021018	+	580.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16_Mm|LTR|ERVK	692486.0	NR_039542	100628607.0		NR_039542	ENSMUSG00000092639	Mir3964	mmu-mir-3964|mu-mir-3964	microRNA 3964	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-23688282-4	chr11	23688188	23688388	+	923.712524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033654, intron 4 of 17)	ID4_|SINE|ID	22312.0	NM_028304	74467.0	Mm.29536	NM_028304	ENSMUSG00000020280	Pus10	2810013G11Rik|4933435A13Rik|AU014648|C77560|Ccdc139	pseudouridylate synthase 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-12868776-1	chr10	12868676	12868876	+	1000.0	f0_balb.idr	Intergenic	Intergenic	-7041.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	2.43786301530596	1.93992293533289	2.43791681535226	2.47244493266009	2.27357772315592	2.41796552213838	1.89554494108183	2.66232029776176	0.00309482853579663	0.997013138720331	0.999268611847349
Merged-chr7-47056475-4	chr7	47056380	47056580	+	982.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5840.0	NM_026436	67893.0	Mm.27338	NM_026436	ENSMUSG00000010307	Tmem86a	1810054O13Rik|AI414959|AW742698	transmembrane protein 86A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191202090-3	chr1	191201993	191202193	+	864.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18760.0	NM_007498	11910.0	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-37725070-2	chr3	37724970	37725170	+	543.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198657)	promoter-TSS (NM_198657)	-710.0	NM_198657	381438.0	Mm.490549	NM_198657	ENSMUSG00000058174	Gm5148	EG381438	predicted gene 5148	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97685833-4	chr11	97685736	97685936	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001085500)	promoter-TSS (NM_001085500)	-116.0	NM_001085500	217149.0	Mm.29659	NM_001085500	ENSMUSG00000078695	Cisd3	Mel-13|Mel13	CDGSH iron sulfur domain 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-53572577-2	chr6	53572476	53572676	+	837.666687	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172728)	promoter-TSS (NM_172728)	-798.0	NM_172728	231991.0	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-86537840-2	chr6	86537740	86537940	+	854.875	f1_balb.idr|f1_c57bl6.idr	intron (NR_037961, intron 3 of 4)	B1_Mur3|SINE|Alu	10439.0	NR_037961	72012.0	Mm.349174	NR_037960	ENSMUSG00000097048	1600020E01Rik	-	RIKEN cDNA 1600020E01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-119504823-4	chr1	119504716	119504916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022327)	promoter-TSS (NM_022327)	-34.0	NM_022327	64143.0	Mm.27832	NM_022327	ENSMUSG00000004451	Ralb	5730472O18Rik	v-ral simian leukemia viral oncogene B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-129209308-4	chr6	129209220	129209420	+	950.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28705.0	NM_053109	93694.0	Mm.197536	NM_053109	ENSMUSG00000030157	Clec2d	Clr-b|Clrb|Ocil	C-type lectin domain family 2, member d	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-54696937-4	chr12	54696808	54697008	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	U1|snRNA|snRNA	-1014.0	NM_025456	66266.0	Mm.156440	NM_025456	ENSMUSG00000054302	Eapp	1810011O16Rik	E2F-associated phosphoprotein	protein-coding	4.75314919571802	4.0282658130921	4.17503394731767	4.65654653521529	4.7241707939344	4.05787202879904	4.26903025755304	4.75523501307025	0.0571243592380763	0.886825201173557	0.998431161219273
Merged-chr8-110846611-4	chr8	110846512	110846712	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310607)	promoter-TSS (NM_001310607)	12.0	NM_001310607	102339.0	Mm.272930	NM_133973	ENSMUSG00000031753	Cog4	AW554810|D8Ertd515e	component of oligomeric golgi complex 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-45109558-7	chr2	45109558	45109758	+	987.31427	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149354, intron 2 of 2)	CpG	619.0	NM_001289521	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-50121894-2	chr17	50121794	50121994	+	694.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_181397, intron 2 of 9)	intron (NM_181397, intron 2 of 9)	68603.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64298441-4	chr5	64298349	64298549	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 11 of 18)	intron (NM_001289514, intron 11 of 18)	68092.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	4.39370879788292	4.4581826707453	5.09188039584247	4.6064505217681	3.36164068408099	4.11655051682531	3.24020679494863	3.12883399468703	-1.55385053854896	0.000666874144684103	0.0140371157682805
Merged-chr10-99349491-3	chr10	99349385	99349585	+	959.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	86254.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-29361907-6	chr10	29361936	29362136	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001110196, exon 1 of 3)	5' UTR (NM_001110196, exon 1 of 3)	406.0	NM_026518	68031.0	Mm.28930	NM_026518	ENSMUSG00000038876	Rnf146	2610509H23Rik|Iduna	ring finger protein 146	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80773603-1	chr7	80773503	80773703	+	1000.0	f1_c57bl6.idr	intron (NM_016721, intron 2 of 37)	intron (NM_016721, intron 2 of 37)	29728.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	0.720714169172018	0.343410452426184	0.335434486088178	0.996254222911943	0.320435373851639	0.345201137404098	1.15295209976905	0.658918950961801	0.217137514377113	0.906909470910987	1
Merged-chr3-51234626-4	chr3	51234514	51234714	+	855.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009834, intron 1 of 2)	intron (NM_009834, intron 1 of 2)	10167.0	NM_009834	12457.0	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-17267690-1	chr12	17267590	17267790	+	716.0	f0_balb.idr	intron (NM_027959, intron 1 of 12)	intron (NM_027959, intron 1 of 12)	1095.0	NM_027959	71853.0	Mm.222825	NM_027959	ENSMUSG00000020571	Pdia6	1700015E05Rik|AL023058|C77895|CaBP5|P5|Txndc7	protein disulfide isomerase associated 6	protein-coding	0.0825559403548993	0.102190591614767	0.435593844058483	0.992201179400444	0.483612294396755	0.103631185894032	0.097199786247561	0.266126853474602	-1.45537498905159	0.473400904785164	1
Merged-chr4-19699161-2	chr4	19699061	19699261	+	612.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_074090, intron 1 of 24)	intron (NR_074090, intron 1 of 24)	9843.0	NM_177327	107568.0	Mm.78312	NM_177327	ENSMUSG00000041058	Wwp1	8030445B08Rik|AIP5|SDRP1|Tiul1	WW domain containing E3 ubiquitin protein ligase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-86585798-3	chr8	86585711	86585911	+	641.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19221.0	NM_172912	244562.0	Mm.67485	NM_172912	ENSMUSG00000036872	Abcc12	4930467B22Rik|MRP9	ATP-binding cassette, sub-family C (CFTR/MRP), member 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-142985426-2	chr7	142985354	142985554	+	640.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16190.0	NM_008554	17173.0	Mm.196417	NM_008554	ENSMUSG00000009248	Ascl2	2410083I15Rik|Mash2|bHLHa45	achaete-scute family bHLH transcription factor 2	protein-coding	1.52110770254263	0.92237283362773	1.54832949195144	1.24569334441038	1.43474004838388	0.925509632984716	1.77595606932345	1.51034059200156	0.425502806791545	0.739877224906705	0.998431161219273
Merged-chr7-83568297-4	chr7	83568211	83568411	+	854.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16620.0	NM_177695	233424.0	Mm.486619	NM_177695	ENSMUSG00000038540	Tmc3	9030203A06	transmembrane channel-like gene family 3	protein-coding	-1.58994551673671	-1.55912852307891	-1.56844783632235	-1.57610299769523	-1.18549093183599	-1.55710898902261	-1.56633814807757	-1.57473272746952	1.78703309985663	0.610309988231842	1
Merged-chr17-28391544-2	chr17	28391444	28391644	+	689.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26328.0	NM_021478	22157.0	Mm.42102	NM_021478	ENSMUSG00000037446	Tulp1	Tulp1l	tubby like protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124471645-2	chr5	124471545	124471745	+	663.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030259, intron 1 of 3)	B1_Mm|SINE|Alu	6590.0	NM_030259	80291.0	Mm.425280	NM_030259	ENSMUSG00000029401	Rilpl2	-	Rab interacting lysosomal protein-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-123368601-10	chr7	123368520	123368720	+	925.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316713, intron 1 of 19)	intron (NM_001316713, intron 1 of 19)	1295.0	NM_001122643	70497.0	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-151820722-3	chr1	151820638	151820838	+	883.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001311166, exon 20 of 20)	3' UTR (NM_001311166, exon 20 of 20)	65364.0	NM_001311166	66967.0	Mm.337691	NM_001039644	ENSMUSG00000043019	Edem3	2310050N11Rik	ER degradation enhancer, mannosidase alpha-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-51358128-1	chr14	51358028	51358228	+	610.0	f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-12639.0	NR_045736	75377.0	Mm.402100	NR_045736	ENSMUSG00000115540	4930597G03Rik	-	RIKEN cDNA 4930597G03 gene	ncRNA	0.730155309600031	0.826963440758088	1.26888764587643	0.562441048745031	0.546905800747622	1.4685396717119	0.576226432411124	1.77970282874392	1.36369957079665	0.384606246852982	0.875617789324873
Merged-chr9-94240056-2	chr9	94239956	94240156	+	609.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	298025.0	NM_001033145	68861.0	Mm.258746	NM_001033145	ENSMUSG00000045414	1190002N15Rik	GoPro49|HASF	RIKEN cDNA 1190002N15 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-20735892-2	chr14	20735792	20735992	+	864.400024	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001039138, exon 20 of 20)	3' UTR (NM_001039138, exon 20 of 20)	-1330.0	NM_010811	17423.0	Mm.4084	NM_010811	ENSMUSG00000039308	Ndst2	Mndns|NDST-2	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-127496758-1	chr3	127496658	127496858	+	844.0	f0_c57.idr	intron (NM_001327938, intron 1 of 47)	intron (NM_001327938, intron 1 of 47)	2357.0	NM_001327938	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	2.94435073089558	2.07433951705981	2.4091495676213	2.5402535036576	2.13013583008003	2.08926658308415	2.53617815785565	1.35111580102864	-1.00072928211034	0.263575214641748	0.76534529437592
Merged-chr3-142620159-4	chr3	142620071	142620271	+	800.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010260)	promoter-TSS (NM_010260)	-492.0	NM_010260	14469.0	Mm.24038	NM_010260	ENSMUSG00000028270	Gbp2	-	guanylate binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-61700231-2	chr11	61700131	61700331	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178618, intron 2 of 4)	intron (NM_178618, intron 2 of 4)	15821.0	NM_178618	69640.0	Mm.458559	NM_178618	ENSMUSG00000042377	Fam83g	2310040C09Rik|AI506990|wly	family with sequence similarity 83, member G	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-34943912-4	chr2	34943809	34944009	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001326601, exon 10 of 10)	exon (NM_001326601, exon 10 of 10)	17863.0	NM_009421	22029.0	Mm.239514	NM_009421	ENSMUSG00000026875	Traf1	4732496E14Rik	TNF receptor-associated factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-22984370-2	chr4	22984270	22984470	+	715.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	493822.0	NR_131335	105500046.0		NR_131335	ENSMUSG00000107859	Gm30731	Pnky|lnc-pou3f2	predicted gene, 30731	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-129338472-2	chr3	129338372	129338572	+	663.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5723.0	NM_007934	13809.0	Mm.1193	NM_007934	ENSMUSG00000028024	Enpep	6030431M22Rik|APA|Bp-1/6C3|Ly-51|Ly51	glutamyl aminopeptidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55147944-1	chr14	55147844	55148044	+	541.0	f0_balb.idr	Intergenic	Intergenic	-31009.0	NM_177049	319984.0	Mm.19047	NM_177049	ENSMUSG00000022208	Jph4	9330157P13Rik|JP-4|JPHL1	junctophilin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4200648-2	chr19	4200548	4200748	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011237, intron 3 of 10)	intron (NM_011237, intron 3 of 10)	955.0	NM_011237	19367.0	Mm.277629	NM_011237	ENSMUSG00000024824	Rad9a	Rad9	RAD9 checkpoint clamp component A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-49083327-2	chr11	49083227	49083427	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271677, intron 1 of 2)	intron (NM_001271677, intron 1 of 2)	-3690.0	NM_001271676	15953.0	Mm.24769	NM_008330	ENSMUSG00000078920	Ifi47	47kDa|IRG-47|Ifggc1|Igrd|Iigp4|Iipg4|Irgd	interferon gamma inducible protein 47	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-43922258-2	chr7	43922158	43922358	+	660.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR53|LTR|ERVL	-11513.0	NM_174865	317652.0	Mm.389896	NM_174865	ENSMUSG00000055193	Klk15	-	kallikrein related-peptidase 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4882043-2	chr16	4881943	4882143	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2192.0	NM_145359	207740.0	Mm.268895	NM_145359	ENSMUSG00000039568	Ubald1	1500031H01Rik|BC013706|Fam100a	UBA-like domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-17001137-4	chr11	17001036	17001236	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019549, intron 1 of 9)	RMER19C|LTR|ERVK	7582.0	NM_019549	56193.0	Mm.98232	NM_019549	ENSMUSG00000020120	Plek	2010300B13Rik	pleckstrin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-102818920-1	chr2	102818820	102819020	+	767.0	f1_c57bl6.idr	intron (NM_001039150, intron 13 of 13)	intron (NM_001039150, intron 13 of 13)	-72160.0	NR_153853	102637542.0	Mm.371582	NR_153852		Gm13872	-	predicted gene 13872	ncRNA	3.18223243793837	1.92497676813062	2.14958048379743	2.08486268818403	1.36485434817902	1.5200106231707	1.47207879714929	2.4201094426327	-1.59048599685557	0.107148506597493	0.511634829725411
Merged-chr15-73494452-2	chr15	73494352	73494552	+	836.125	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-18108.0	NR_152151	105841.0	Mm.322557	NM_001081066	ENSMUSG00000036661	Dennd3	AI447457|E030003N15Rik	DENN/MADD domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-93577694-4	chr10	93577577	93577777	+	944.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175488, intron 13 of 15)	intron (NM_175488, intron 13 of 15)	-11736.0	NR_045810	74454.0	Mm.410794	NR_045810	ENSMUSG00000097407	4933408J17Rik	-	RIKEN cDNA 4933408J17 gene	ncRNA	0.0119663443896023	0.775506431267485	0.0245147942696346	0.0198089748873036	0.013135498282478	0.237160149037296	0.625332698070557	0.194920078209883	0.158900573639145	0.939355049063783	1
Merged-chr8-72144556-4	chr8	72144450	72144650	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001491, intron 3 of 7)	intron (NM_001001491, intron 3 of 7)	9258.0	NM_001001491	326618.0	Mm.295124	NM_001001491	ENSMUSG00000031799	Tpm4	2610528G24Rik|Tpm4.2|Tpm4.2cy	tropomyosin 4	protein-coding	4.662118060706	5.21257589011073	4.46169384502049	5.73467470094027	5.65007494421517	4.52393871117433	4.8489949937178	5.49123725305814	0.12186642484575	0.748914895614368	0.998431161219273
Merged-chr9-50768350-4	chr9	50768239	50768439	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361107)	promoter-TSS (NM_001361107)	101.0	NM_198675	382137.0	Mm.390169	NM_198675	ENSMUSG00000037845	Fdxacb1	D630004A14Rik	ferredoxin-fold anticodon binding domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-7066671-2	chr19	7066571	7066771	+	726.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_134147, intron 3 of 10)	intron (NM_134147, intron 3 of 10)	9903.0	NM_134147	107227.0	Mm.439977	NM_134147	ENSMUSG00000036278	Macrod1	AI604841|AW743046|D930010J01Rik|Lrp16	MACRO domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-66991867-1	chr15	66991767	66991967	+	796.0	f1_c57bl6.idr	Intergenic	LTR33A|LTR|ERVL	-22226.0	NM_008681	17988.0	Mm.30837	NM_008681	ENSMUSG00000005125	Ndrg1	CAP43|CMT4D|DRG1|HMSNL|NMSL|Ndr1|Ndrl|PROXY1|RTP|TDD5	N-myc downstream regulated gene 1	protein-coding	-0.893986561169655	-0.875744574464236	0.191235023404903	-0.88803707909448	-0.893095256885496	-0.872421296127899	-0.88349549973802	-0.887416687878218	-3.49744126941707	0.244297073838425	1
Merged-chr12-108762938-2	chr12	108762838	108763038	+	663.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30373.0	NM_009537	22632.0	Mm.3868	NM_009537	ENSMUSG00000021264	Yy1	AW488674|NF-E1	YY1 transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-65631557-2	chr16	65631457	65631657	+	982.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-68860.0	NM_026879	68942.0	Mm.432944	NM_026879	ENSMUSG00000004843	Chmp2b	1190006E07Rik	charged multivesicular body protein 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-108271229-1	chr5	108271129	108271329	+	733.0	f1_c57bl6.idr	intron (NM_026106, intron 1 of 2)	intron (NM_026106, intron 1 of 2)	2332.0	NM_026106	13486.0	Mm.303534	NM_026106	ENSMUSG00000029265	Dr1	1700121L09Rik|Dr1l|NC2|NC2beta	down-regulator of transcription 1	protein-coding	0.546104847960312	1.0459462399222	0.747920783467463	0.408823525029581	0.550768780436806	1.05742855607948	0.755814752546122	0.409856994882516	0.0399741439185824	0.980574728059273	1
Merged-chr6-123230326-2	chr6	123230226	123230426	+	645.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001190320, intron 1 of 4)	(TG)n|Simple_repeat|Simple_repeat	483.0	NM_001190321	56620.0	Mm.271782	NM_020001	ENSMUSG00000023349	Clec4n	Clec6a|Clecsf10|Nkcl	C-type lectin domain family 4, member n	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-116807670-4	chr4	116807572	116807772	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133250)	promoter-TSS (NM_133250)	-62.0	NM_133250	70603.0	Mm.180333	NM_133250	ENSMUSG00000028687	Mutyh	5730495A01Rik|Mutyha|Mutyhalpha|Mutyhb|Mutyhbeta|Mutyhc|Myh	mutY DNA glycosylase	protein-coding	5.48513466125887	5.53419601015302	5.40475599010023	5.84719648681932	5.60484846318784	5.4397568810234	4.89566159120705	5.17224199019039	-0.309791663933256	0.277890227637493	0.781558122642907
Merged-chr2-166472278-4	chr2	166472177	166472377	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT2B3|LTR|ERVL	24826.0	NR_015558	319684.0	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-65126290-3	chr6	65126198	65126398	+	646.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019455, intron 4 of 5)	intron (NM_019455, intron 4 of 5)	18432.0	NM_019455	54486.0	Mm.410688	NM_019455	ENSMUSG00000029919	Hpgds	H-PGDS|Ptgds2	hematopoietic prostaglandin D synthase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-98985633-4	chr6	98985524	98985724	+	810.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001197321, intron 8 of 17)	intron (NM_001197321, intron 8 of 17)	42674.0	NM_001197322	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-3488462-1	chr5	3488362	3488562	+	783.0	f0_balb.idr	intron (NM_009873, intron 5 of 7)	MLT1E2|LTR|ERVL-MaLR	-55371.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-95795930-2	chr15	95795830	95796030	+	971.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 1 of 19)	intron (NM_175344, intron 1 of 19)	5087.0	NM_001253813	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-24874919-1	chr1	24874819	24875019	+	738.0	f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	196001.0	NM_001310483	68421.0	Mm.336563	NM_026719	ENSMUSG00000073725	Lmbrd1	0910001K20Rik|AV347960	LMBR1 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-98015989-4	chr3	98015885	98016085	+	862.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010928, intron 1 of 33)	intron (NM_010928, intron 1 of 33)	2447.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44320871-4	chr9	44320756	44320956	+	963.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027909)	promoter-TSS (NM_027909)	-574.0	NM_027909	71764.0	Mm.491174	NM_027909	ENSMUSG00000032120	C2cd2l	1300006O23Rik|Tmem24	C2 calcium-dependent domain containing 2-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-90243134-4	chr9	90243047	90243247	+	810.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 2 of 12)	intron (NM_194334, intron 2 of 12)	27622.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-62071490-4	chr15	62071417	62071617	+	929.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132746, intron 1 of 6)	intron (NR_132746, intron 1 of 6)	32260.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-131993966-2	chr2	131993866	131994066	+	717.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_175445, exon 11 of 11)	3' UTR (NM_175445, exon 11 of 11)	36022.0	NM_175445	215653.0	Mm.204737	NM_175445	ENSMUSG00000027339	Rassf2	3830431H01Rik|9030412M04Rik|AI852669|AW495050	Ras association (RalGDS/AF-6) domain family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-40560031-2	chr12	40559931	40560131	+	678.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	113978.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-127337415-6	chr2	127337354	127337554	+	731.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010090, exon 3 of 4)	exon (NM_010090, exon 3 of 4)	-1185.0	NM_172539	215095.0	Mm.31313	NM_172539	ENSMUSG00000050468	Astl	7420700F21|C87576|Sas1b	astacin-like metalloendopeptidase (M12 family)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-96343431-4	chr10	96343335	96343535	+	870.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	117228.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180607616-3	chr1	180607523	180607723	+	750.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	20422.0	NR_105869	102466761.0		NR_105869	ENSMUSG00000098926	Mir6904	Gm27426|mmu-mir-6904	microRNA 6904	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-155070643-4	chr1	155070528	155070728	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151545, intron 3 of 6)	intron (NR_151545, intron 3 of 6)	12636.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-93105245-2	chr5	93105145	93105345	+	730.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001009818, intron 1 of 9)	intron (NM_001009818, intron 1 of 9)	11829.0	NM_001347377	52398.0	Mm.394184	NM_001009818	ENSMUSG00000058013	Sept11	6230410I01Rik|AW548875|D5Ertd606e	septin 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55919749-2	chr19	55919649	55919849	+	937.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001142920, intron 11 of 11)	intron (NM_001142920, intron 11 of 11)	24428.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-37769513-4	chr3	37769400	37769600	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45140.0	NM_198657	381438.0	Mm.490549	NM_198657	ENSMUSG00000058174	Gm5148	EG381438	predicted gene 5148	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-53482837-1	chr17	53482737	53482937	+	959.0	f1_c57bl6.idr	intron (NM_025887, intron 1 of 5)	T-rich|Low_complexity|Low_complexity	3603.0	NM_025887	271457.0	Mm.329123	NM_025887	ENSMUSG00000017831	Rab5a	2410015H04Rik|AI663973|AU021172|nnyRab5a	RAB5A, member RAS oncogene family	protein-coding	0.361584758426077	0.0891370795333885	0.0820560531382239	0.541100730470065	0.23102755105256	1.07598207014557	0.0836224514474256	0.077518763359949	1.02968818793272	0.605824918065529	1
Merged-chr18-90151530-2	chr18	90151430	90151630	+	558.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-358624.0	NM_198295	67988.0	Mm.268041	NM_198295	ENSMUSG00000024614	Tmx3	6430411B10Rik|A730024F05Rik|AV259382|Txndc10|mKIAA1830	thioredoxin-related transmembrane protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-41025795-4	chr8	41025714	41025914	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005863, intron 5 of 13)	MTC|LTR|ERVL-MaLR	8346.0	NR_015457	78849.0	Mm.440930	NR_015457	ENSMUSG00000084960	B430010I23Rik	-	RIKEN cDNA B430010I23 gene	ncRNA	5.1396231266846	4.51727777137376	5.61273426482572	5.52878578683871	3.43336063319127	3.89090183877099	4.45980200692656	3.62770452381299	-1.69484508736978	3.34871382216556e-05	0.00126877479278976
Merged-chr13-23769219-4	chr13	23769130	23769330	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5562.0	NM_030609	80838.0	Mm.480242	NM_030609	ENSMUSG00000049539	Hist1h1a	H1.1|H1a|H1f1|H1var3	histone cluster 1, H1a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-75697641-4	chr18	75697534	75697734	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_201354)	promoter-TSS (NM_201354)	62.0	NM_201354	269037.0	Mm.36745	NM_201354	ENSMUSG00000052928	Ctif	Gm672	CBP80/20-dependent translation initiation factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-45416116-2	chr9	45416016	45416216	+	940.833374	f1_balb.idr|f1_c57bl6.idr	TTS (NR_040732)	TTS (NR_040732)	10039.0	NM_007503	11936.0	Mm.22742	NM_007503	ENSMUSG00000059412	Fxyd2	Atp1g1	FXYD domain-containing ion transport regulator 2	protein-coding	-1.06997269762433	-1.30473905204845	-1.3145270772132	-1.32256725251374	-1.06385251204029	-1.30261794616352	-1.3123112828633	-1.32112806497905	0.0394047164033882	0.991001358494878	1
Merged-chr9-72532070-10	chr9	72532054	72532254	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045735)	promoter-TSS (NR_045735)	-86.0	NM_001033536	319758.0	Mm.32081	NM_001033536	ENSMUSG00000037674	Rfx7	2510005N23Rik|9930116O05Rik|D130086K05Rik|Rfxdc2	regulatory factor X, 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-73453066-7	chr2	73452960	73453160	+	886.0238039999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	829.0	NM_001289722	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-5510929-1	chr11	5510829	5511029	+	1000.0	f1_balb.idr	Intergenic	RLTR28B|LTR|ERVL	-9712.0	NM_013842	22433.0	Mm.469937	NM_013842	ENSMUSG00000020484	Xbp1	D11Ertd39e|TREB-5|TREB5|XBP-1	X-box binding protein 1	protein-coding	0.432940969613746	0.473279972895052	1.38977903921331	0.450227595352217	1.56371592909251	0.476147852498268	1.40566668362681	0.452015143550614	1.21735372146779	0.693093663750982	0.99740158133691
Merged-chr9-35212714-2	chr9	35212614	35212814	+	748.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026130, intron 3 of 13)	intron (NM_026130, intron 3 of 13)	1511.0	NM_026130	67398.0	Mm.284688	NM_026130	ENSMUSG00000032042	Srpr	1300011P19Rik|D11Mgi27|Srpra	signal recognition particle receptor ('docking protein')	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-108608967-1	chr8	108608867	108609067	+	632.5	f0_balb.idr	Intergenic	Intergenic	-24290.0	NR_077224	109215.0	Mm.65282	NR_077224	ENSMUSG00000110613	Lncbate1	3010033K07Rik|Lnc-BATE1	brown adipose tissue enriched long non-coding RNA 1	ncRNA	0.414987020361907	0.080612613186856	0.500939035998903	0.0719789339880002	0.4231209368564	0.0817163383249208	0.509981850822076	0.0726333017043799	0.0412636442560988	0.984174987478463	1
Merged-chr16-50373821-2	chr16	50373721	50373921	+	860.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_027444, intron 2 of 16)	intron (NM_027444, intron 2 of 16)	58568.0	NM_027444	70508.0	Mm.28940	NM_027444	ENSMUSG00000022641	Bbx	5530401J07Rik|5730403O13Rik	bobby sox HMG box containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-81735940-2	chr12	81735840	81736040	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001174107, intron 3 of 10)	intron (NM_001174107, intron 3 of 10)	45230.0	NM_177395	338372.0	Mm.35284	NM_177395	ENSMUSG00000042724	Map3k9	E130314H24Rik|Mlk1|Prke1	mitogen-activated protein kinase kinase kinase 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-36132249-5	chr13	36132239	36132439	+	935.339417	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039189, intron 1 of 5)	intron (NM_001039189, intron 1 of 5)	14696.0	NM_001039189	69955.0	Mm.70690	NM_024274	ENSMUSG00000021420	Fars2	Fars1|pheRS	phenylalanine-tRNA synthetase 2 (mitochondrial)	protein-coding	1.49562233206833	1.09820809515608	0.853559209262782	1.20818583571087	1.90884520866398	1.71931647471258	1.40438054464183	0.843741495812933	1.27781785036852	0.334257703663384	0.834577676585727
Merged-chr16-90694938-3	chr16	90694839	90695039	+	854.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32432.0	NM_025642	66578.0	Mm.180363	NM_025642	ENSMUSG00000022978	Mis18a	2610039C10Rik|2810018N07Rik	MIS18 kinetochore protein A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-55005161-4	chr11	55005084	55005284	+	905.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001110211, exon 9 of 25)	exon (NM_001110211, exon 9 of 25)	28287.0	NR_138556	11749.0	Mm.265347	NM_013472	ENSMUSG00000018340	Anxa6	AW107198|Anx6|AnxVI|Cabm|Camb	annexin A6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-100436873-2	chr13	100436773	100436973	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008670, intron 5 of 15)	intron (NM_008670, intron 5 of 15)	15991.0	NM_008670	17940.0	Mm.6898	NM_008670	ENSMUSG00000021640	Naip1	AV364616|Birc1a|D13Lsd1|Naip|Naip-rs1	NLR family, apoptosis inhibitory protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-44273659-3	chr12	44273557	44273757	+	838.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026164, intron 1 of 9)	intron (NM_026164, intron 1 of 9)	4503.0	NM_026164	67452.0	Mm.54126	NM_026164	ENSMUSG00000036257	Pnpla8	1200006O19Rik|AI467579|Ipla2(gamma)	patatin-like phospholipase domain containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59745342-2	chr15	59745242	59745442	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49617.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-101879906-4	chr13	101879799	101879999	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-111682.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-112739213-4	chr6	112739134	112739334	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080448, intron 16 of 21)	intron (NM_080448, intron 16 of 21)	-42564.0	NM_001167730	58186.0	Mm.103812	NM_021385	ENSMUSG00000030254	Rad18	2810024C04Rik|Rad18sc	RAD18 E3 ubiquitin protein ligase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-108468130-4	chr6	108468062	108468262	+	855.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 44 of 61)	intron (NM_010585, intron 44 of 61)	-21581.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	2.47273594374657	1.72550172946019	2.58242821933709	2.40342038324764	1.92159427847958	2.57891028251493	2.07871868757852	3.18901236764668	0.452240776116079	0.594848144169597	0.971009057416876
Merged-chr9-124275646-1	chr9	124275546	124275746	+	812.5	f0_c57.idr	Intergenic	RMER6A|LTR|ERVK	37048.0	NM_001243118	630836.0	Mm.458553	NM_001243117	ENSMUSG00000074829	2010315B03Rik	BC029716	RIKEN cDNA 2010315B03 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-17450368-2	chr17	17450268	17450468	+	636.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025681, intron 4 of 5)	intron (NM_025681, intron 4 of 5)	47682.0	NM_025681	66643.0	Mm.268018	NM_025681	ENSMUSG00000047786	Lix1	5730466L18Rik	limb and CNS expressed 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-34955694-4	chr6	34955600	34955800	+	861.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025573, intron 5 of 7)	intron (NM_001025573, intron 5 of 7)	22299.0	NM_001025573	243753.0	Mm.440221	NM_001025573	ENSMUSG00000029847	Slc23a4	2010107G12Rik|Gm468	solute carrier family 23 member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-15847125-2	chr6	15847025	15847225	+	743.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	126464.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-89247029-2	chr7	89246929	89247129	+	637.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360746, intron 4 of 14)	RMER1B|Other|Other	91758.0	NM_028343	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-85845360-2	chr11	85845260	85845460	+	565.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12745.0	NM_009324	21385.0	Mm.287052	NM_009324	ENSMUSG00000000093	Tbx2	-	T-box 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-125726841-5	chr8	125726862	125727062	+	963.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER4B|LTR|ERVK	-7241.0	NM_025636	66566.0	Mm.25296	NM_025636	ENSMUSG00000031851	Ntpcr	2310079N02Rik|AI449709	nucleoside-triphosphatase, cancer-related	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-59392515-4	chr11	59392409	59392609	+	965.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16856.0	NM_001045521	216797.0	Mm.339586	NM_001045521	ENSMUSG00000049291	Prss38	Gm249|Mpn2	protease, serine 38	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45895978-2	chr7	45895878	45896078	+	808.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021482, intron 1 of 4)	intron (NM_021482, intron 1 of 4)	733.0	NM_001291064	58867.0	Mm.214217	NM_021482	ENSMUSG00000040231	Syngr4	1700016O14Rik	synaptogyrin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-62660777-2	chr2	62660677	62660877	+	656.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR34B_MM|LTR|ERVK	-3550.0	NM_145523	227960.0	Mm.219877	NM_145523	ENSMUSG00000026893	Gca	5133401E04Rik|AI573844	grancalcin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-79088506-1	chr11	79088406	79088606	+	1000.0	f0_c57.idr	intron (NM_013571, intron 1 of 17)	intron (NM_013571, intron 1 of 17)	-28670.0	NM_001348207	16706.0	Mm.4745	NM_013571	ENSMUSG00000018334	Ksr1	AW492498|B-KSR1|D11Bhm183e|D11Bhm184e|Ksr|RSU2|hb|mKSR1	kinase suppressor of ras 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99051093-2	chr7	99050993	99051193	+	611.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 6 of 14)	intron (NM_178635, intron 6 of 14)	90051.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-104263067-4	chr9	104262975	104263175	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163026)	promoter-TSS (NM_001163026)	-145.0	NM_001163026	235567.0	Mm.217256	NM_001163026	ENSMUSG00000032560	Dnajc13	D030002L11Rik|Gm1124|RME-8|Rme8|mKIAA0678	DnaJ heat shock protein family (Hsp40) member C13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-78488636-2	chr9	78488536	78488736	+	973.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6912.0	NM_010106	13627.0	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-53196520-4	chr15	53196413	53196613	+	943.658325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	149670.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-162624170-2	chr1	162624123	162624323	+	710.5	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-14927.0	NM_010865	17926.0	Mm.10694	NM_010865	ENSMUSG00000026697	Myoc	AI957332|GLC1A|TIGR	myocilin	protein-coding	1.01192924693927	1.1305398967648	0.849512299673887	1.25243532123896	1.78698733036416	2.31794173566596	0.854113727461802	1.98608794608782	2.71837735447274	0.0371654096077979	0.274350236551083
Merged-chr11-69628490-4	chr11	69628389	69628589	+	888.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER21B|LTR|ERVL	-4482.0	NM_011814	23879.0	Mm.41930	NM_011814	ENSMUSG00000018765	Fxr2	Fxr2h	fragile X mental retardation, autosomal homolog 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-148700414-4	chr5	148700328	148700528	+	883.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41412.0	NR_028285	70138.0	Mm.417834	NR_028285	ENSMUSG00000086494	2210417A02Rik	AV081004	RIKEN cDNA 2210417A02 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-140614892-4	chr6	140614798	140614998	+	900.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7765.0	NM_178803	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-59627132-1	chr16	59627032	59627232	+	655.0	f0_balb.idr	intron (NM_019665, intron 2 of 7)	intron (NM_019665, intron 2 of 7)	-9813.0	NR_040564	75145.0	Mm.399348	NR_040564		4930547E14Rik	-	RIKEN cDNA 4930547E14 gene	ncRNA	-1.84436392554074	-1.52091821270385	-1.82290882857571	-1.83054882630441	-1.84220491470818	-1.81159244170985	-1.82080331928423	-1.82918127036376	-1.56828060379516	0.655578384384393	1
Merged-chr11-69801683-2	chr11	69801618	69801818	+	661.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291104)	promoter-TSS (NM_001291104)	-2.0	NM_010198	14166.0	Mm.269011	NM_010198	ENSMUSG00000042826	Fgf11	Fgf-11|Fhf-3|Fhf3	fibroblast growth factor 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-94617350-4	chr9	94617265	94617465	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52527.0	NM_177909	331004.0	Mm.326125	NM_177909	ENSMUSG00000031129	Slc9a9	5730527A11Rik|9930105B05|AI854429|Nhe9	solute carrier family 9 (sodium/hydrogen exchanger), member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-95825318-4	chr16	95825201	95825401	+	927.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	73412.0	NR_040485	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-16326853-1	chr5	16326753	16326953	+	686.0	f0_balb.idr	intron (NM_001110843, intron 20 of 38)	intron (NM_001110843, intron 20 of 38)	-226642.0	NM_001289460	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-37209776-2	chr19	37209676	37209876	+	552.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027314, intron 1 of 5)	Lx8|LINE|L1	2231.0	NM_001164336	69104.0	Mm.175989	NM_027314	ENSMUSG00000023307	March5	1810015H18Rik|2310008I22Rik|2700055A20Rik|5730499H23Rik|E130202O05Rik|MARCH-V|MITOL|Marchv|Rnf153	membrane-associated ring finger (C3HC4) 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-165740636-2	chr1	165740536	165740736	+	717.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2B1|LTR|ERVL	-23122.0	NR_149310	433375.0	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-120868591-3	chr9	120868488	120868688	+	936.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46662.0	NR_040742	76402.0	Mm.436588	NR_040742	ENSMUSG00000100146	1700020M21Rik	-	RIKEN cDNA 1700020M21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-97109817-2	chr9	97109717	97109917	+	988.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_138756, intron 1 of 6)	intron (NM_138756, intron 1 of 6)	1224.0	NM_138756	192287.0	Mm.228067	NM_138756	ENSMUSG00000032449	Slc25a36	C330005L02Rik	solute carrier family 25, member 36	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-3182575-2	chr11	3182496	3182696	+	995.125	f0_balb.idr|f1_balb.idr	intron (NM_030207, intron 4 of 32)	MTD|LTR|ERVL-MaLR	10867.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-60250553-2	chr14	60250453	60250653	+	740.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001362440, intron 1 of 14)	intron (NM_001362440, intron 1 of 14)	926.0	NM_001362440	71844.0	Mm.258051	NM_170591	ENSMUSG00000114797	Nupl1	1700017F11Rik|Nup58|mKIAA0410	nucleoporin like 1	protein-coding	-1.36245527554381	-1.47758440807466	-1.48704571646499	-1.19707836829368	-1.50667469222183	-1.47553410307769	-1.4849038836314	-1.49342636832094	-1.86907304515541	0.591535440840713	1
Merged-chr8-10893866-2	chr8	10893766	10893966	+	675.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6056.0	NR_102285	71624.0	Mm.139075	NR_102285	ENSMUSG00000109089	4833411C07Rik	-	RIKEN cDNA 4833411C07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-43508306-2	chr18	43508206	43508406	+	770.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70020.0	NM_001291455	22240.0	Mm.8180	NM_009468	ENSMUSG00000024501	Dpysl3	CRMP-4|DRP-3|TUC4|ULIP-1|Ulip|Ulip1	dihydropyrimidinase-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-108070507-4	chr3	108070402	108070602	+	843.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14900.0	NM_001346665	109674.0	Mm.274335	NM_028779	ENSMUSG00000027889	Ampd2	1200014F01Rik|AI552571|Ampd-2|m4521Dajl	adenosine monophosphate deaminase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-145037795-4	chr4	145037683	145037883	+	877.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276465, intron 65 of 69)	intron (NM_001276465, intron 65 of 69)	144646.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167919444-2	chr2	167919344	167919544	+	685.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12883.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-43895029-4	chr7	43894903	43895103	+	896.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER20|DNA|hAT-Charlie	13831.0	NM_019928	56640.0	Mm.42080	NM_019928	ENSMUSG00000006948	Klk4	ESMP1|KLK-L1|PSTS|Prss17	kallikrein related-peptidase 4 (prostase, enamel matrix, prostate)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70282916-4	chr8	70282810	70283010	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011984)	promoter-TSS (NM_011984)	-89.0	NM_011984	26558.0	Mm.388127	NM_011984	ENSMUSG00000003573	Homer3	AW146114	homer scaffolding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-125459301-4	chr1	125459176	125459376	+	854.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-23549.0	NM_001205385	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-40921418-4	chr14	40921338	40921538	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145928, intron 2 of 8)	intron (NM_145928, intron 2 of 8)	26771.0	NM_001316748	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-77446060-2	chr11	77445960	77446160	+	794.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_177710, intron 13 of 14)	intron (NM_177710, intron 13 of 14)	-17853.0	NM_139129	216961.0	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-154990558-3	chr2	154990403	154990603	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-23067.0	NM_015770	50518.0	Mm.315593	NM_015770	ENSMUSG00000027596	a	A<y>|ASIP|ASP|As	nonagouti	protein-coding	3.49560595804761	2.78348881730967	1.71660565300846	3.44688650472164	5.77996141354882	4.05610447829081	4.67732677864494	4.41701856891298	2.50590538161564	1.55780025204065e-05	0.000662307134474448
Merged-chr3-52257993-4	chr3	52257899	52258099	+	959.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10338.0	NM_019739	56458.0	Mm.29891	NM_019739	ENSMUSG00000044167	Foxo1	AI876417|Afxh|FKHR|Fkhr1|Foxo1a	forkhead box O1	protein-coding	-0.420305442527479	-0.409286399817395	-0.102942451813327	0.0911709579189952	-0.419622036503396	-0.408466705285675	-0.0960082315035137	-0.415213803480741	-1.44011447945642	0.578075964259219	1
Merged-chr14-14600057-5	chr14	14599859	14600059	+	994.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-103066.0	NM_001360505	218756.0	Mm.258893	NM_001033270	ENSMUSG00000021733	Slc4a7	E430014N10Rik|NBC3|NBCn1|NBCn1-G|Tg(Thy1-SNCA)12Mjff	solute carrier family 4, sodium bicarbonate cotransporter, member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3914717-4	chr19	3914629	3914829	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026316, intron 9 of 9)	intron (NM_026316, intron 9 of 9)	-1955.0	NM_001271444	225887.0	Mm.44227	NM_144870	ENSMUSG00000059734	Ndufs8	BC021616|CI-23kD|TYKY	NADH dehydrogenase (ubiquinone) Fe-S protein 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-112337321-4	chr13	112337224	112337424	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168403, intron 6 of 11)	intron (NM_001168403, intron 6 of 11)	48806.0	NM_001168404	77318.0	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	3.74473547321782	4.58799203913143	5.07409241393794	4.77277535290511	3.91011640393969	4.8221686369431	4.96702284883391	4.90429245954585	0.104679811097145	0.801965634997076	0.998431161219273
Merged-chr8-115392554-4	chr8	115392466	115392666	+	643.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	314328.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-108609094-4	chr3	108608979	108609179	+	917.991699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358055, intron 1 of 14)	Lx7|LINE|L1	17346.0	NM_001358055	99512.0	Mm.285968	NM_181400	ENSMUSG00000040389	Wdr47	1810073M12Rik|AA552998|mKIAA0893	WD repeat domain 47	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85487050-4	chr12	85487053	85487253	+	879.131226	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13263.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-58847130-4	chr11	58847030	58847230	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6014.0	NM_146537	258530.0	Mm.377556	NM_146537	ENSMUSG00000094805	Olfr311	MOR222-1	olfactory receptor 311	protein-coding	5.76322459827136	4.8977974399973	5.57370682231633	5.56924816400188	5.65121243008441	5.95075529337165	6.36430460720265	5.4087409314862	0.43784966142387	0.137050798817317	0.577469500630244
Merged-chr3-109249035-4	chr3	109248897	109249097	+	928.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-91686.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81548370-2	chr10	81548270	81548470	+	576.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1C|Other|Other	-3324.0	NM_010301	14672.0	Mm.260925	NM_010301	ENSMUSG00000034781	Gna11	Dsk7|E430025L19	guanine nucleotide binding protein, alpha 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-38013935-4	chr18	38013832	38014032	+	968.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14963.0	NM_001205336	106952.0	Mm.247642	NM_139206	ENSMUSG00000024451	Arap3	Centd3|Drag1|E030006K04Rik|cnt-d3	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-144287353-4	chr2	144287251	144287451	+	934.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16447.0	NM_001355688	74528.0	Mm.386817	NM_028984	ENSMUSG00000027424	Mgme1	8430406I07Rik|AI426476	mitochondrial genome maintenance exonuclease 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-52502899-4	chr3	52502800	52503000	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14064.0	NR_153344	102631981.0	Mm.394225	NR_153344		Gm30173	-	predicted gene, 30173	ncRNA	3.60076068163193	3.96254057270671	3.7501095693489	4.32436060864469	4.10233562974094	4.45274645653212	4.51799079467454	4.4374252825715	0.59964838912418	0.158605180973792	0.617304810117937
Merged-chr9-57990795-2	chr9	57990695	57990895	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7229.0	NM_001346787	13070.0	Mm.302865	NM_019779	ENSMUSG00000032323	Cyp11a1	Cyp11a|Cypxia1|D9Ertd411e|P450scc|Scc|cscc	cytochrome P450, family 11, subfamily a, polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-29482681-2	chr19	29482581	29482781	+	814.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	39306.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139283902-2	chr5	139283802	139284002	+	620.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172723, intron 4 of 10)	intron (NM_172723, intron 4 of 10)	30405.0	NM_001163316	67604.0	Mm.270137	NM_026269	ENSMUSG00000025858	Get4	1110007L15Rik|AW412535|Cee	golgi to ER traffic protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-76002492-4	chr16	76002387	76002587	+	840.020874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155447, intron 2 of 3)	intron (NR_155447, intron 2 of 3)	1703.0	NR_155447	102632240.0	Mm.417237	NR_155447	ENSMUSG00000087214	Gm15555	-	predicted gene 15555	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-14686316-4	chr14	14686237	14686437	+	920.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16688.0	NM_001360505	218756.0	Mm.258893	NM_001033270	ENSMUSG00000021733	Slc4a7	E430014N10Rik|NBC3|NBCn1|NBCn1-G|Tg(Thy1-SNCA)12Mjff	solute carrier family 4, sodium bicarbonate cotransporter, member 7	protein-coding	0.665473709204635	0.403993693787699	0.395630331218342	0.956229025300563	0.790499065360582	1.27892930878642	0.397480101218909	0.569196841982759	0.954691440410378	0.576396483664963	1
Merged-chr5-129785656-1	chr5	129785556	129785756	+	692.5	f1_balb.idr	intron (NM_133900, intron 1 of 7)	B3|SINE|B2	1597.0	NM_133900	100678.0	Mm.271784	NM_133900	ENSMUSG00000029446	Psph	AI480570|PSP|PSPase	phosphoserine phosphatase	protein-coding	1.57430800333409	2.21717504756616	2.01173919883071	2.38490382404526	1.87099310775007	2.65425993162149	2.15804567834698	1.23228875990142	0.00925901582719302	0.992576796550668	0.998431161219273
Merged-chr13-87235393-1	chr13	87235293	87235493	+	626.0	f1_balb.idr	Intergenic	L1_Mus4|LINE|L1	-1188598.0	NM_007749	12867.0	Mm.378898	NM_007749	ENSMUSG00000017778	Cox7c	COXVIIc|Cox7c1	cytochrome c oxidase subunit VIIc	protein-coding	0.155338685998291	0.172637347430139	0.608261721569599	0.162585524168017	0.527519533303758	0.659823910214142	0.617623976400761	0.163349124078933	1.58668334741062	0.432659702039323	1
Merged-chr9-95682027-4	chr9	95681941	95682141	+	965.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029620, intron 5 of 8)	MTB_Mm|LTR|ERVL-MaLR	44413.0	NM_029620	76477.0	Mm.46016	NM_029620	ENSMUSG00000015354	Pcolce2	2400001O18Rik|Pcpe2	procollagen C-endopeptidase enhancer 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-8905603-2	chr3	8905503	8905703	+	583.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025434, intron 1 of 2)	ORR1A4-int|LTR|ERVL-MaLR	18254.0	NM_025434	66230.0	Mm.38460	NM_025434	ENSMUSG00000040269	Mrps28	1500012D08Rik|AW061224	mitochondrial ribosomal protein S28	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-74935914-2	chr7	74935814	74936014	+	568.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-94297.0	NR_131122	75205.0	Mm.399304	NR_131122	ENSMUSG00000108803	4930533N22Rik	Gm44904	RIKEN cDNA 4930533N22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-121547473-2	chr11	121547373	121547573	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029878, intron 14 of 38)	intron (NM_029878, intron 14 of 38)	-28131.0	NM_178763	319530.0	Mm.11395	NM_178763	ENSMUSG00000039238	Zfp750	A030007D23Rik|Znf750	zinc finger protein 750	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-50548063-1	chr9	50547963	50548163	+	656.0	f1_balb.idr	intron (NM_001359610, intron 2 of 10)	MER34|LTR|ERV1	5599.0	NM_001359610	170752.0	Mm.390149	NM_133217	ENSMUSG00000032066	Bco2	B-diox-II|Bcdo2|Bcmo2|CMO2	beta-carotene oxygenase 2	protein-coding	-1.2087802031865	-1.18255559123277	-1.1934648774972	-1.20242609004962	-1.0572203610596	-0.684244446803552	-1.19099525421168	-1.20082203728721	2.61682731156801	0.42085555974408	1
Merged-chr7-25709002-2	chr7	25708902	25709102	+	581.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	10051.0	NM_028771	52132.0	Mm.278798	NM_028771	ENSMUSG00000002608	Ccdc97	1200014H14Rik|2810446P04Rik|AA545218|D7Ertd462e	coiled-coil domain containing 97	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-87831765-3	chr10	87831665	87831865	+	995.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-26500.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-55851491-2	chr7	55851391	55851591	+	676.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011370, intron 1 of 30)	Lx8|LINE|L1	9420.0	NM_001164661	20430.0	Mm.37249	NM_011370	ENSMUSG00000030447	Cyfip1	E030028J09Rik|P140SRA-1|P140sra1|Shyc|Sra-1|Sra1|l(7)1Rl|l71Rl|l7Rl1|mKIAA0068|pl-1	cytoplasmic FMR1 interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-57261627-4	chr9	57261514	57261714	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028820, intron 1 of 2)	CpG	985.0	NM_028820	74211.0	Mm.428905	NM_028820	ENSMUSG00000032300	1700017B05Rik	AA682102|D9Ertd278e	RIKEN cDNA 1700017B05 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-45009728-2	chr2	45009628	45009828	+	547.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355291, intron 4 of 9)	intron (NM_001355291, intron 4 of 9)	13449.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-8889452-4	chr12	8889358	8889558	+	955.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31849.0	NM_008640	17775.0	Mm.30071	NM_008640	ENSMUSG00000020585	Laptm4a	AA286466|LAPTM4|MTP|Mtrp|mKIAA0108	lysosomal-associated protein transmembrane 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-90606798-4	chr6	90606708	90606908	+	867.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027868, intron 1 of 10)	intron (NM_027868, intron 1 of 10)	1928.0	NM_027868	71699.0	Mm.272633	NM_027868	ENSMUSG00000030089	Slc41a3	1010001P06Rik|AI480742|SLC41A1-L2	solute carrier family 41, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-105963236-1	chr1	105963136	105963336	+	576.0	f1_c57bl6.idr	Intergenic	MLT1A1|LTR|ERVL-MaLR	27046.0	NR_151625	635504.0	Mm.359717	NR_151625		Gm7160	EG635504	predicted gene 7160	ncRNA	3.11763199428179	3.02167198126062	2.82046344711441	3.15189745048397	2.4050628512484	1.51296067087639	1.4652741221368	3.29961671754436	-1.1293138041666	0.189151570022946	0.667555616405381
Merged-chr15-103215319-4	chr15	103215211	103215411	+	878.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001110216)	promoter-TSS (NM_001110216)	41.0	NM_007626	12419.0	Mm.262059	NM_007626	ENSMUSG00000009575	Cbx5	2610029O15Rik|C75991|HP1|Hp1a|Hp1alpha	chromobox 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-40801130-7	chr9	40801027	40801227	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031165)	promoter-TSS (NM_031165)	-146.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	8.01916710427482	8.11127397814978	8.33787135503121	8.18714321194797	8.05238986598057	7.93133570362375	8.00790466937647	8.0569247594103	-0.15690173805121	0.205070114071453	0.692299163936211
Merged-chr2-91194879-4	chr2	91194784	91194984	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_013839, exon 1 of 10)	5' UTR (NM_013839, exon 1 of 10)	151.0	NM_013839	22259.0	Mm.22690	NM_013839	ENSMUSG00000002108	Nr1h3	AU018371|LXR|RLD1|Unr1	nuclear receptor subfamily 1, group H, member 3	protein-coding	5.75667352981432	5.96211955292229	5.70865962151598	5.98100031795111	4.96580800982528	4.78637588957077	4.04090976673263	5.22034153879597	-1.18443284396303	0.000100001321776844	0.00309230891412003
Merged-chr3-51378575-2	chr3	51378475	51378675	+	631.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17972.0	NR_028121	67749.0	Mm.273339	NM_026358	ENSMUSG00000037161	Mgarp	4930583H14Rik|AI195347|CESP-1|HUMMR|Osap|Qsap	mitochondria localized glutamic acid rich protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166491200-2	chr2	166491100	166491300	+	775.916626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43749.0	NR_015558	319684.0	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-50195458-2	chr17	50195358	50195558	+	600.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4961.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-8660418-2	chr8	8660318	8660518	+	858.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010111, intron 1 of 4)	CpG	355.0	NM_010111	13642.0	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-105800138-2	chr5	105800096	105800296	+	735.0	f0_balb.idr|f1_balb.idr	intron (NM_001122768, intron 2 of 2)	intron (NM_001122768, intron 2 of 2)	-76372.0	NR_030777	54367.0	Mm.248876	NM_018759	ENSMUSG00000029290	Zfp326	5730470H14Rik|ZAN75|Znf326	zinc finger protein 326	protein-coding	0.582024890165628	0.625511809811176	1.79613055808347	0.981618855594286	0.773595912398136	1.235017038794	1.54599733301521	0.602584280518826	-0.0599043618125118	0.969079893080739	0.998431161219273
Merged-chr18-10181490-4	chr18	10181386	10181586	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_009071, exon 1 of 33)	5' UTR (NM_009071, exon 1 of 33)	306.0	NM_009071	19877.0	Mm.6710	NM_009071	ENSMUSG00000024290	Rock1	1110055K06Rik|Rock-I	Rho-associated coiled-coil containing protein kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-44428246-6	chr10	44428181	44428381	+	894.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30467.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-172476114-2	chr1	172475994	172476194	+	592.5	f0_balb.idr|f0_c57.idr	intron (NM_029612, intron 1 of 3)	intron (NM_029612, intron 1 of 3)	734.0	NM_029612	98365.0	Mm.150050	NM_029612	ENSMUSG00000026548	Slamf9	2310026I04Rik|AI462096|CD2F-10|CD84-H1|Cd2f10|SF2001	SLAM family member 9	protein-coding	-0.622353736242211	-0.755096457663907	-0.758271270333135	-0.596711642021395	-0.764164373072385	-0.754379921761065	-0.757571601639772	-0.126123099143	1.35226719769988	0.627565940945432	1
Merged-chr3-51882116-4	chr3	51882029	51882229	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	220950.0	NM_001310482	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-59823150-4	chr13	59823035	59823235	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153538)	promoter-TSS (NM_153538)	12.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-20082843-4	chr14	20082749	20082949	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026209, intron 1 of 1)	CpG	323.0	NM_026209	67509.0	Mm.292423	NM_026209	ENSMUSG00000045107	Saysd1	1810063B07Rik|4930488P03Rik	SAYSVFN motif domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-114438432-4	chr8	114438318	114438518	+	853.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1234.0	NM_019573	80707.0	Mm.440420	NM_019573	ENSMUSG00000004637	Wwox	5330426P09Rik|9030416C10Rik|WOX1	WW domain-containing oxidoreductase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-117495942-2	chr4	117495842	117496042	+	553.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025739, intron 1 of 14)	CpG	1110.0	NM_025739	66743.0	Mm.318331	NM_025739	ENSMUSG00000028677	Rnf220	4732477A13|4931406I20Rik|5730503K05Rik|AV302541	ring finger protein 220	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21153328-2	chr9	21153228	21153428	+	796.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3422.0	NM_016742	12539.0	Mm.32331	NM_016742	ENSMUSG00000019471	Cdc37	p50|p50Cdc37	cell division cycle 37	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-65785374-2	chr17	65785274	65785474	+	705.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_152099, intron 2 of 20)	intron (NR_152099, intron 2 of 20)	2019.0	NR_104465	70351.0	Mm.48686	NM_146081	ENSMUSG00000061950	Ppp4r1	3110001J10Rik|Pp4r1	protein phosphatase 4, regulatory subunit 1	protein-coding	-0.218378836272245	0.147423319690744	-0.354374670515801	-0.357732448351009	-0.36247768535522	0.279946126245741	-0.353414794662897	-0.357145845127954	0.15478141597218	0.950388084268056	1
Merged-chr4-139259066-3	chr4	139258976	139259176	+	902.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037761, intron 3 of 9)	intron (NM_001037761, intron 3 of 9)	51632.0	NR_151463	212555.0	Mm.45131	NM_145384	ENSMUSG00000028744	Pqlc2	BC019216	PQ loop repeat containing 2	protein-coding	1.42701269782468	0.649200106652946	1.15434776986422	0.62837989064077	0.932111041722501	1.05940302927274	1.60080007828502	0.629983638090162	0.386143690429313	0.802396359571879	0.998431161219273
Merged-chr2-4391352-4	chr2	4391249	4391449	+	953.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172475, intron 1 of 22)	ORR1F|LTR|ERVL-MaLR	-9627.0	NM_001177843	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-33432336-3	chr2	33432226	33432426	+	860.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1002.0	NM_001276332	241311.0	Mm.296512	NM_001085507	ENSMUSG00000068966	Zbtb34	Gm349|mKIAA1993	zinc finger and BTB domain containing 34	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-46218323-3	chr9	46218244	46218444	+	815.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027498, intron 21 of 24)	intron (NM_027498, intron 21 of 24)	-10286.0	NM_009692	11806.0	Mm.26743	NM_009692	ENSMUSG00000032083	Apoa1	Alp-1|Apoa-1|Brp-14|Ltw-1|Lvtw-1|Sep-1|Sep-2|Sep2|apo-AI|apoA-I	apolipoprotein A-I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-91516528-2	chr6	91516428	91516628	+	667.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009531)	promoter-TSS (NM_009531)	493.0	NM_026309	67678.0	Mm.246693	NM_026309	ENSMUSG00000034192	Lsm3	1010001J12Rik|2610005D18Rik|6030401D18Rik|SMX4|USS2	LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-121718646-4	chr5	121718561	121718761	+	891.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009125, intron 1 of 24)	intron (NM_009125, intron 1 of 24)	7052.0	NM_009125	20239.0	Mm.260900	NM_009125	ENSMUSG00000042605	Atxn2	9630045M23Rik|ATX2|AW544490|Sca2	ataxin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-81434469-3	chr16	81434394	81434594	+	684.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113208, intron 2 of 17)	intron (NM_001113208, intron 2 of 17)	233797.0	NM_010954	17968.0	Mm.433941	NM_010954	ENSMUSG00000022762	Ncam2	Ncam-2|Ocam|RNCAM	neural cell adhesion molecule 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83115334-2	chr11	83115234	83115434	+	819.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1486.0	NM_011407	20555.0	Mm.10948	NM_011407	ENSMUSG00000078763	Slfn1	AV316259	schlafen 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-110166082-4	chr11	110165991	110166191	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_147220, intron 1 of 38)	intron (NM_147220, intron 1 of 38)	2062.0	NM_147220	217262.0	Mm.291459	NM_147220	ENSMUSG00000041797	Abca9	D630040K07Rik	ATP-binding cassette, sub-family A (ABC1), member 9	protein-coding	3.08182403107575	3.72531431875996	3.67553857665996	3.50172145098269	2.55890490487325	3.173961081068	4.54757546518675	2.8402609780147	0.0390713648266956	0.951229072356415	0.998431161219273
Merged-chr8-117157236-3	chr8	117157131	117157331	+	865.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081151)	promoter-TSS (NM_001081151)	-904.0	NM_001081151	209239.0	Mm.132992	NM_001081151	ENSMUSG00000052557	Gan	A330045G18|gigaxonin	giant axonal neuropathy	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78347809-1	chr15	78347709	78347909	+	818.0	f1_balb.idr	promoter-TSS (NR_106137).2	promoter-TSS (NR_106137).2	-790.0	NR_106138	102466845.0		NR_106138	ENSMUSG00000099059	Mir7676-2	Gm27790|mmu-mir-7676-2	microRNA 7676-2	ncRNA	-0.666572845166483	0.0998736145492645	-0.658584619310185	-0.661583200940227	-0.665829670282278	-0.653832856664264	-0.657728386114099	-0.335663049129888	-1.51852849899562	0.595804170942427	1
Merged-chr14-55762561-6	chr14	55762372	55762572	+	943.263916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_020490, exon 2 of 2)	exon (NM_020490, exon 2 of 2)	1044.0	NM_020490	57260.0	Mm.159670	NM_020490	ENSMUSG00000040432	Ltb4r2	5830462O07Rik|BLT2|LTB4-R 2|LTB4-R-2|LTB4-R2	leukotriene B4 receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114994644-1	chr11	114994544	114994744	+	697.0	f1_balb.idr	Intergenic	RLTR13B1|LTR|ERVK	-4758.0	NM_145437	217305.0	Mm.275986	NM_145437	ENSMUSG00000034641	Cd300ld	4732429D16Rik|CLM5|Cd300ld1|LMIR4|MAIR-IV|clm-5	CD300 molecule like family member d	protein-coding	2.66405198325499	2.26929899979877	2.47617335074657	1.48944562934615	3.81929397877055	3.57043657573873	1.24899209145882	1.20347400885045	1.23197425115525	0.436958749665717	0.908362185228875
Merged-chr10-121364999-4	chr10	121364872	121365072	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029364)	promoter-TSS (NM_029364)	-118.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	2.79923688967842	1.37754575700799	1.34008107160522	2.88252805538346	2.34938759164935	2.74930175122851	2.01929244814859	2.66239007597353	0.306898553443531	0.752916341745502	0.998431161219273
Merged-chr11-54028207-4	chr11	54028084	54028284	+	990.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001330304)	promoter-TSS (NM_001330304)	-80.0	NM_001330304	30805.0	Mm.274590	NM_019687	ENSMUSG00000020334	Slc22a4	Octn1	solute carrier family 22 (organic cation transporter), member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132065766-3	chr4	132065651	132065851	+	862.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183428, intron 1 of 20)	intron (NM_183428, intron 1 of 20)	6346.0	NM_183428	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81359862-2	chr10	81359762	81359962	+	621.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_028657, intron 1 of 9)	intron (NM_028657, intron 1 of 9)	2371.0	NM_028657	73822.0	Mm.182281	NM_028657	ENSMUSG00000034854	Mfsd12	C19orf28|F630110N24Rik|Wdt1|gr	major facilitator superfamily domain containing 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-71939175-2	chr16	71939090	71939290	+	685.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	295137.0	NR_131116	319533.0	Mm.373754	NR_131115		8030451O07Rik	-	RIKEN cDNA 8030451O07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-104367117-4	chr11	104366987	104367187	+	935.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359634, intron 5 of 14)	ID_B1|SINE|B4	75204.0	NM_001081045	76719.0	Mm.136418	NM_001081045	ENSMUSG00000018412	Kansl1	1700081L11Rik|9430041J06Rik|mKIAA1267	KAT8 regulatory NSL complex subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-33378533-4	chr5	33378418	33378618	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081101)	promoter-TSS (NM_001081101)	-178.0	NR_153108	71101.0	Mm.132178	NM_027674	ENSMUSG00000037355	Uvssa	4933407H18Rik|D330017J19Rik|Kiaa1530|mKIAA1530	UV stimulated scaffold protein A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-4065623-2	chr7	4065523	4065723	+	909.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2419.0	NM_001302676	52855.0	Mm.290880	NM_178611	ENSMUSG00000055541	Lair1	5133400O11Rik|BB115266|D7Bwg0421e|Lair-1	leukocyte-associated Ig-like receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125481903-4	chr6	125481748	125481948	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007657, intron 1 of 7)	intron (NM_007657, intron 1 of 7)	12912.0	NM_007657	12527.0	Mm.210676	NM_007657	ENSMUSG00000030342	Cd9	Tspan29	CD9 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125099404-2	chr6	125099317	125099517	+	775.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346610, intron 2 of 38)	intron (NM_001346610, intron 2 of 38)	2393.0	NR_106012	102466272.0		NR_106012	ENSMUSG00000098762	Mir7045	Gm27758|mmu-mir-7045	microRNA 7045	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-88420843-4	chr10	88420751	88420951	+	963.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004164, intron 7 of 20)	intron (NM_001004164, intron 7 of 20)	-38736.0	NM_011517	20962.0	Mm.297977	NM_011517	ENSMUSG00000020059	Sycp3	Cor1|Scp3	synaptonemal complex protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-52476418-4	chr5	52476326	52476526	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-4883.0	NM_001256059	100503884.0	Mm.332379	NM_001256059	ENSMUSG00000045790	Ccdc149	Gm447	coiled-coil domain containing 149	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-108005306-3	chr9	108005216	108005416	+	877.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013785, intron 1 of 5)	intron (NM_013785, intron 1 of 5)	2668.0	NM_013785	27399.0	Mm.276155	NM_013785	ENSMUSG00000032594	Ip6k1	1200016D08Rik|AU022776|Ihpk1|InsP6|InsP6k1|Itpk6	inositol hexaphosphate kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-8878955-2	chr4	8878855	8879055	+	563.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	127631.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-37865204-4	chr1	37865090	37865290	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207228)	promoter-TSS (NM_207228)	-108.0	NM_207228	211484.0	Mm.332756	NM_207228	ENSMUSG00000060771	Tsga10	4933432N21Rik|AI843383|Gm217|Mtsga10	testis specific 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-48564856-2	chr13	48564756	48564956	+	550.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	-26584.0	NR_029725	387244.0		NR_029725	ENSMUSG00000065421	Mirlet7a-1	Let-7a|Mirnlet7a|Mirnlet7a-1|let-7a-1	microRNA let7a-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-44598738-1	chr15	44598638	44598838	+	703.0	f0_balb.idr	Intergenic	Intergenic	-20489.0	NM_001357690	55960.0	Mm.287896	NM_019480	ENSMUSG00000022339	Ebag9	AI835379|Rcas1	estrogen receptor-binding fragment-associated gene 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-112343141-4	chr5	112342997	112343197	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027323)	promoter-TSS (NM_027323)	2.0	NM_138646	192232.0	Mm.238043	NM_138646	ENSMUSG00000042328	Hps4	2010205O06Rik|AU040608|BLOC-3|C130020P05Rik|le|mKIAA1667	HPS4, biogenesis of lysosomal organelles complex 3 subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-6165333-4	chr11	6165239	6165439	+	925.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173748, intron 2 of 5)	L1MC|LINE|L1	7992.0	NR_029471	100042173.0	Mm.441799	NR_029471		Rps15a-ps6	Gm11968	ribosomal protein S15A, pseudogene 6	pseudo	0.705273044800799	1.227192972242	0.419581737981934	0.757289179141831	0.570126073146926	1.34646513413824	0.421735249314634	0.413331058018326	-0.231595028762814	0.890419266725091	1
Merged-chr18-52909357-4	chr18	52909243	52909443	+	850.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199151, intron 11 of 11)	intron (NM_001199151, intron 11 of 11)	141199.0	NM_001199154	67847.0	Mm.292168	NM_026408	ENSMUSG00000024534	Sncaip	2810407O15Rik|4933427B05Rik|BB104594|SYPH1	synuclein, alpha interacting protein (synphilin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-139446313-2	chr7	139446213	139446413	+	566.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355162, intron 1 of 15)	RMER19B|LTR|ERVK	45819.0	NM_001355162	212111.0	Mm.28308	NM_183144	ENSMUSG00000025477	Inpp5a	-	inositol polyphosphate-5-phosphatase A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-79882134-4	chr10	79882058	79882258	+	862.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011178, exon 4 of 5)	exon (NM_011178, exon 4 of 5)	2491.0	NM_011178	19152.0	Mm.2364	NM_011178	ENSMUSG00000057729	Prtn3	PR3|mPR3	proteinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-24383826-4	chr2	24383787	24383987	+	909.633301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355231, intron 2 of 17)	intron (NM_001355231, intron 2 of 17)	-1445.0	NM_177611	215632.0	Mm.490434	NM_177611	ENSMUSG00000026979	Psd4	BC046518|EFA6B	pleckstrin and Sec7 domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140613425-2	chr5	140613325	140613525	+	977.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008494, intron 6 of 7)	intron (NM_008494, intron 6 of 7)	6084.0	NM_008494	16848.0	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-90380028-2	chr16	90379928	90380128	+	936.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-6369.0	NM_015755	26559.0	Mm.125874	NM_015755	ENSMUSG00000053414	Hunk	Bstk1|Mak-v	hormonally upregulated Neu-associated kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36513318-2	chr1	36513218	36513418	+	839.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039551, intron 1 of 8)	intron (NM_001039551, intron 1 of 8)	1451.0	NM_053186	94218.0	Mm.256323	NM_053186	ENSMUSG00000001138	Cnnm3	Acdp3|Clp3|mACDP3	cyclin M3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-144768063-4	chr5	144767958	144768158	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081362)	promoter-TSS (NM_001081362)	-734.0	NM_001081362	100683.0	Mm.273570	NM_001081362	ENSMUSG00000045482	Trrap	AI481500	transformation/transcription domain-associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-12168024-4	chr18	12167913	12168113	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029623)	promoter-TSS (NM_029623)	-717.0	NM_029623	76482.0	Mm.196596	NM_029623	ENSMUSG00000024410	3110002H16Rik	2400010D15Rik|Mic-1|Mic1|Rmc1|Wdr98	RIKEN cDNA 3110002H16 gene	protein-coding	-1.18832717429738	-1.16380929885254	-0.856565824811958	-1.18328408639367	-1.18787580914644	-1.16149229066421	-0.849604865165746	-1.18171197755832	0.0406512889656815	0.990321405100139	1
Merged-chr6-59180585-4	chr6	59180478	59180678	+	944.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28292.0	NM_001081145	68140.0	Mm.25843	NM_001081145	ENSMUSG00000049232	Tigd2	3632410O17Rik	tigger transposable element derived 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30282946-4	chr7	30282803	30283003	+	969.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_144498, intron 2 of 2)	RMER19B|LTR|ERVK	-2482.0	NM_146186	233064.0	Mm.271677	NM_146186	ENSMUSG00000037020	Wdr62	2310038K02Rik|b2b1508Clo	WD repeat domain 62	protein-coding	4.64369196065852	4.69456962620867	4.79449530351622	3.87481844814652	6.09404923475652	5.91135958764669	6.21171133390184	6.29671108277857	1.82754941276175	3.97377050295524e-10	7.16746708537354e-08
Merged-chr3-51224784-6	chr3	51224670	51224870	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_009834, exon 1 of 3)	5' UTR (NM_009834, exon 1 of 3)	323.0	NM_009834	12457.0	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-61981593-2	chr18	61981493	61981693	+	821.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172628, intron 8 of 16)	intron (NM_172628, intron 8 of 16)	28518.0	NM_172628	225608.0	Mm.262320	NM_172628	ENSMUSG00000045629	Sh3tc2	D430044G18Rik	SH3 domain and tetratricopeptide repeats 2	protein-coding	-1.52696403314699	-1.49523967873556	-1.5048333853602	-1.51271394162622	-1.52473704212565	-1.49316068248889	-1.50266158046844	-1.06847079017215	2.01069003169785	0.564432837776867	1
Merged-chr15-59851562-2	chr15	59851462	59851662	+	808.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56603.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-30606901-4	chr12	30606799	30606999	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22456.0	NM_172049	211986.0	Mm.34035	NM_172049	ENSMUSG00000043061	Tmem18	BC024093	transmembrane protein 18	protein-coding	4.64922783216565	5.50517197869161	4.71476209625365	5.25151006714426	4.97441670950887	4.80260650216166	3.37156768557158	4.61365098530859	-0.611223266445009	0.133276509998277	0.570764692507331
Merged-chr2-118883485-4	chr2	118883374	118883574	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-18141.0	NM_001045523	228536.0	Mm.330487	NM_001045523	ENSMUSG00000040007	Bahd1	AL022997|AW541238|Gm117|mKIAA0945	bromo adjacent homology domain containing 1	protein-coding	1.74044691086662	1.4402560129511	1.25381663787685	0.717076836868288	1.02570655882559	1.45312713332405	0.730021335760434	0.71884682495942	-1.31909530975806	0.372052728938136	0.865109408625856
Merged-chr3-57749054-4	chr3	57748898	57749098	+	973.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357080, intron 2 of 10)	intron (NM_001357080, intron 2 of 10)	12941.0	NR_130743	24017.0	Mm.274360	NM_011883	ENSMUSG00000036503	Rnf13	2010001H16Rik|Rzf	ring finger protein 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71406857-4	chr8	71406761	71406961	+	950.4833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310502, intron 3 of 8)	intron (NM_001310502, intron 3 of 8)	849.0	NM_172756	234396.0	Mm.216549	NM_172756	ENSMUSG00000046295	Ankle1	8430438L13Rik|Ankrd41|C430003I23|Lem3	ankyrin repeat and LEM domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-44223685-1	chr5	44223585	44223785	+	700.666687	f0_balb.idr	intron (NM_173764, intron 1 of 13)	intron (NM_173764, intron 1 of 13)	2921.0	NM_173764	231225.0	Mm.30688	NM_173764	ENSMUSG00000046985	Tapt1	4932414K18Rik	transmembrane anterior posterior transformation 1	protein-coding	-0.25293145420185	-0.240234272314466	-0.244408334623182	0.264746382516541	0.008249558203667	-0.239291454513468	-0.243488910723481	0.271442215852642	0.538870606123217	0.825510827421101	1
Merged-chr6-37723554-4	chr6	37723467	37723667	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-147244.0	NM_001272064	21848.0	Mm.41063	NM_145076	ENSMUSG00000029833	Trim24	A130082H20Rik|AI447469|D430004I05Rik|TIF1|TIF1-alpha|TIF1alpha|Tif1a	tripartite motif-containing 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167073136-2	chr2	167073036	167073236	+	620.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	7843.0	NR_028540	100217443.0		NR_028540		Snord12	MBII-99	small nucleolar RNA, C/D box 12	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-23706193-4	chr13	23706077	23706277	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347493, intron 2 of 4)	intron (NM_001347493, intron 2 of 4)	4677.0	NM_001347493	15216.0	Mm.2681	NM_010424	ENSMUSG00000006611	Hfe	MR2	hemochromatosis	protein-coding	1.60717858197277	0.882945742551993	1.11261653791917	0.842468139566789	1.03513307651621	1.56419360669432	1.90376143622012	2.57733933650906	2.31781258088622	0.0682144899837458	0.392092493930074
Merged-chr8-34216775-4	chr8	34216676	34216876	+	813.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-50064.0	NR_105820	102465211.0		NR_105820	ENSMUSG00000098785	Mir6395	Gm27561|mmu-mir-6395	microRNA 6395	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133829850-2	chr4	133829708	133829908	+	805.583313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44923.0	NM_001285506	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	1.9407427665093	1.38741389230365	1.09433374999035	1.94128572921559	2.30296063029239	2.68225755339423	1.88685115031268	1.07681943500147	1.23843939351225	0.27405963566915	0.778080338087663
Merged-chr1-150377469-4	chr1	150377378	150377578	+	995.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357579, intron 9 of 13)	L1_Mus2|LINE|L1	-15360.0	NM_133780	108989.0	Mm.174256	NM_133780	ENSMUSG00000006005	Tpr	2610029M07Rik|C77892	translocated promoter region, nuclear basket protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44124046-1	chr7	44123946	44124146	+	565.0	f0_balb.idr	Intergenic	RLTR45|LTR|ERVK	11373.0	NM_010114	13646.0	Mm.5193	NM_010114	ENSMUSG00000060177	Klk1b22	EGF-BP A|Egfbp-1|Egfbp1|Klk22|mGk-22	kallikrein 1-related peptidase b22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-146072914-2	chr3	146072814	146073014	+	697.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_172864, intron 10 of 22)	intron (NM_172864, intron 10 of 22)	35122.0	NM_172864	242253.0	Mm.235040	NM_172864	ENSMUSG00000043020	Wdr63	4931433A13Rik|IC140|Ida7	WD repeat domain 63	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-10981862-2	chr16	10981762	10981962	+	852.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_019980, intron 1 of 3)	B3A|SINE|B2	11259.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-66519795-4	chr17	66519725	66519925	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024448)	promoter-TSS (NM_024448)	-155.0	NM_024448	19328.0	Mm.248313	NM_024448	ENSMUSG00000023460	Rab12	2900054P15Rik|AW555448|C77700	RAB12, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96247401-2	chr3	96247301	96247501	+	938.1666869999999	f1_balb.idr|f1_c57bl6.idr	TTS (NM_178216).2	TTS (NM_178216).2	701.0	NM_054045	97114.0	Mm.358797	NM_054045	ENSMUSG00000081058	Hist2h3c2	H3-614|H3.2-614|Hist2h3c2-ps|Hist2h3ca1|M32461	histone cluster 2, H3c2	protein-coding	1.06281232583592	0.775075723690608	2.07047516385029	1.26691817713035	1.07181147933475	0.778369943971544	1.32065374924726	1.2743259815632	-1.02500664773807	0.448480185545524	0.914989884444793
Merged-chr2-160288103-1	chr2	160288003	160288203	+	863.3333130000001	f0_balb.idr	Intergenic	Intergenic	39391.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83689590-4	chr6	83689508	83689708	+	934.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11751.0	NM_144943	246278.0	Mm.136079	NM_144943	ENSMUSG00000034783	Cd207	-	CD207 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-97299053-2	chr7	97298953	97299153	+	578.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_010248, exon 4 of 10)	exon (NM_010248, exon 4 of 10)	26911.0	NM_001177412	244144.0	Mm.297541	NM_001177412	ENSMUSG00000035713	Usp35	Gm1088|Gm493	ubiquitin specific peptidase 35	protein-coding	-0.526600081771721	-0.641444516434336	-0.360048064276095	-0.645884769313943	-0.648572795755591	-0.468572057166896	-0.353783697908387	-0.645550093245369	0.196249556806803	0.939502929085305	1
Merged-chr11-75047293-4	chr11	75047213	75047413	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001002764, intron 12 of 18)	intron (NM_001002764, intron 12 of 18)	18678.0	NR_030454	735274.0		NR_030454	ENSMUSG00000106252	Mir684-1	Mirn684-1	microRNA 684-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-55812689-3	chr16	55812563	55812763	+	726.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001159394, exon 12 of 12)	3' UTR (NM_001159394, exon 12 of 12)	9475.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-78161563-4	chr18	78161442	78161642	+	793.200012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207651, intron 13 of 21)	intron (NM_207651, intron 13 of 21)	17630.0	NM_001110273	27411.0	Mm.44158	NM_030683	ENSMUSG00000024552	Slc14a2	UT-A1|UT-A3	solute carrier family 14 (urea transporter), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-79621929-2	chr11	79621829	79622029	+	760.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175543, intron 3 of 14)	intron (NM_175543, intron 3 of 14)	1234.0	NR_003283	790912.0	Mm.447313	NR_003283	ENSMUSG00000087434	Rab11fip4os1	Gm11202	RAB11 family interacting protein 4 (class II), opposite strand 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-91762567-2	chr6	91762467	91762667	+	607.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001159507, exon 24 of 24)	3' UTR (NM_001159507, exon 24 of 24)	44826.0	NM_001159507	243547.0	Mm.333264	NM_001033353	ENSMUSG00000030098	Grip2	-	glutamate receptor interacting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-67526083-4	chr7	67525992	67526192	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028144, intron 8 of 8)	MER21B|LTR|ERVL	119144.0	NM_175124	67867.0	Mm.31247	NM_027413	ENSMUSG00000030556	Lrrc28	1300004K21Rik|2210012C09Rik|2310058O11Rik	leucine rich repeat containing 28	protein-coding	2.29180283431141	3.89511886953388	3.67871382261236	3.48312296106163	4.43033128212742	4.14810330421744	5.44687956576903	3.82072029405821	1.56581575363176	0.0041978627341108	0.0584291845520434
Merged-chr14-66250349-3	chr14	66250261	66250461	+	908.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	30691.0	NM_001162366	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70247640-3	chr11	70247537	70247737	+	854.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007440, intron 8 of 13)	intron (NM_007440, intron 8 of 13)	7733.0	NM_001331118	11684.0	Mm.12286	NM_007440	ENSMUSG00000000320	Alox12	9930022G08Rik|Alox12p|P-12LO	arachidonate 12-lipoxygenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70354205-4	chr8	70354110	70354310	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001122829)	promoter-TSS (NM_001122829)	-931.0	NM_001122829	19704.0	Mm.258280	NM_030680	ENSMUSG00000058301	Upf1	B430202H16Rik|NORF1|PNORF-1|Rent1|Upflp	UPF1 regulator of nonsense transcripts homolog (yeast)	protein-coding	5.02860501564601	4.94725369462867	4.98748058045487	4.7561970033981	4.12848101491281	3.80683643679345	4.28709999141288	4.21829908931914	-1.0198233304385	0.00509712783292535	0.0679000811318709
Merged-chr11-84916393-4	chr11	84916293	84916493	+	974.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001005223)	promoter-TSS (NM_001005223)	-27.0	NM_001005223	448850.0	Mm.379733	NM_001005223	ENSMUSG00000020526	Znhit3	Myohd1|TRIP-3|Trip3	zinc finger, HIT type 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-18690190-2	chr16	18690090	18690290	+	744.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60252.0	NM_213614	18951.0	Mm.20365	NM_213614	ENSMUSG00000072214	Sept5	Cdcrel-1|Cdcrel1|Pnutl1	septin 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-34310511-4	chr14	34310424	34310624	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008133)	promoter-TSS (NM_008133)	-7.0	NM_001360074	75698.0	Mm.45406	NM_029389	ENSMUSG00000041471	Fam35a	3110001K24Rik	family with sequence similarity 35, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-64670968-2	chr17	64670868	64671068	+	657.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008549, intron 8 of 21)	L1MA8|LINE|L1	69319.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-136655917-1	chr6	136655817	136656017	+	614.0	f1_balb.idr	intron (NM_025806, intron 1 of 10)	intron (NM_025806, intron 1 of 10)	5976.0	NM_025806	66857.0	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	1.42602365328102	0.983261837275102	0.96264074645862	2.13652642158404	1.56479232363534	1.24276275067723	2.30421666930596	1.65083739434575	0.78784919636955	0.52228670455954	0.947836760490745
Merged-chr6-125039705-4	chr6	125039599	125039799	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133345)	promoter-TSS (NM_133345)	-149.0	NM_133345	28019.0	Mm.262547	NM_133345	ENSMUSG00000030330	Ing4	D6Wsu147e|D6Xrf92|p29ING4	inhibitor of growth family, member 4	protein-coding	5.68453249676911	5.90587874211313	5.64088144528166	6.02211525552086	6.17307535709745	5.48113563459597	5.35435767357564	5.95387780299122	-0.0320901583491014	0.904478874580648	0.998431161219273
Merged-chr19-4121186-4	chr19	4121080	4121280	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016666, intron 2 of 6)	intron (NM_016666, intron 2 of 6)	395.0	NM_001276284	11632.0	Mm.10433	NM_016666	ENSMUSG00000024847	Aip	AA408703|AW476050|Ara9|D19Bwg1412e|Fkbp16|Xap2	aryl-hydrocarbon receptor-interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-77279752-4	chr1	77279660	77279860	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	217008.0	NR_105770	102465180.0		NR_105770	ENSMUSG00000099141	Mir6352	Gm27481|mmu-mir-6352	microRNA 6352	ncRNA	5.66589443596789	6.09173404610621	6.0501951722894	5.60324305707433	6.06693828804779	6.31173753850656	6.48298224782856	5.81326680344958	0.355907322544772	0.147540170623636	0.597632331918427
Merged-chr4-102279194-2	chr4	102279094	102279294	+	543.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177983, intron 1 of 5)	intron (NM_001177983, intron 1 of 5)	24255.0	NM_019840	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-94036514-2	chr8	94036414	94036614	+	749.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177767)	promoter-TSS (NM_177767)	525.0	NM_026623	68219.0	Mm.354445	NM_026623	ENSMUSG00000031754	Nudt21	25kDa|3110048P04Rik|5730530J16Rik|AU014860|AW549947|Cpsf5	nudix (nucleoside diphosphate linked moiety X)-type motif 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-145803141-2	chr2	145803041	145803241	+	653.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_028724, intron 2 of 12)	(CAAA)n|Simple_repeat|Simple_repeat	17025.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-34299696-1	chr12	34299596	34299796	+	565.0	f0_balb.idr	intron (NM_001271386, intron 16 of 27)	ORR1D2|LTR|ERVL-MaLR	229193.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-59340259-1	chr2	59340159	59340359	+	614.0	f0_balb.idr	intron (NM_175464, intron 15 of 20)	intron (NM_175464, intron 15 of 20)	46423.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132938728-2	chr4	132938628	132938828	+	857.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16177.0	NM_001163792	230789.0	Mm.11473	NM_145553	ENSMUSG00000028878	Fam76a	-	family with sequence similarity 76, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-117373619-4	chr5	117373503	117373703	+	955.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021539, intron 4 of 8)	intron (NM_021539, intron 4 of 8)	15420.0	NM_028128	72151.0	Mm.27997	NM_028128	ENSMUSG00000029363	Rfc5	2610020K06Rik|2610209F07Rik|36.5kDa|36kDa|Recc5	replication factor C (activator 1) 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128775348-1	chr2	128775248	128775448	+	679.0	f1_c57bl6.idr	intron (NM_008587, intron 9 of 18)	Tigger6a|DNA|TcMar-Tigger	-42955.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	1.08263777784676	1.69362940916009	2.04399991332952	1.79954023042762	1.08970371339074	0.955291506774231	1.16402213440621	1.80990807669203	-1.32068300347352	0.2825415324322	0.78519146991697
Merged-chr17-71021204-3	chr17	71021123	71021323	+	642.527771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083934, intron 1 of 36)	RSINE1|SINE|B4	1666.0	NM_001083934	17929.0	Mm.4103	NM_010867	ENSMUSG00000024049	Myom1	D430047A17Rik	myomesin 1	protein-coding	3.55745060038114	4.04672226170475	3.13929677760218	4.44453403105862	4.27414473736505	3.60303842387101	3.16534939440329	3.37290590334557	-0.291541418605016	0.593427258609859	0.9706660979479
Merged-chr8-91082604-2	chr8	91082514	91082714	+	911.0	f0_balb.idr|f1_balb.idr	intron (NM_001282000, intron 4 of 20)	intron (NM_001282000, intron 4 of 20)	12557.0	NM_001282000	19651.0	Mm.235580	NM_011250	ENSMUSG00000031666	Rbl2	PRB2|RBR-2|Rb2|p130	RB transcriptional corepressor like 2	protein-coding	1.8385862192156	3.40912404951232	1.56621870253052	1.20985275844123	2.17941975143896	3.10199903476011	4.15602964841482	1.97665915470057	1.42703457079459	0.131505428691067	0.567281950631593
Merged-chr11-106158309-3	chr11	106158209	106158409	+	862.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001356459, exon 5 of 5)	3' UTR (NM_001356459, exon 5 of 5)	1618.0	NM_001356459	67803.0	Mm.21687	NM_172397	ENSMUSG00000040699	Limd2	0610025L06Rik|AI413966	LIM domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-99267730-3	chr10	99267644	99267844	+	593.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_026268)	TTS (NM_026268)	4513.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-108200568-4	chr3	108200582	108200782	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081320, exon 1 of 3)	exon (NM_001081320, exon 1 of 3)	152.0	NM_028061	72023.0	Mm.246391	NM_028061	ENSMUSG00000048796	Cyb561d1	1600010M23Rik|AI605489|AW457162	cytochrome b-561 domain containing 1	protein-coding	0.586364728186082	0.232693796796792	0.890698575412902	0.221577403734634	0.595023658842853	0.234107363492918	0.687166854435718	0.222423709633399	-0.415078459505423	0.831897385482534	1
Merged-chr7-19321605-4	chr7	19321496	19321696	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-11551.0	NM_001347586	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	-0.294083384950798	-0.277963382818132	0.430175288204581	-0.287290034214969	-0.293070061983337	-0.276782190008417	0.44311158986884	-0.286577643912737	0.0410571026119648	0.987250810110592	1
Merged-chr2-124741113-3	chr2	124741008	124741208	+	961.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	87527.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-61661353-2	chr11	61661253	61661453	+	733.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027817, intron 2 of 4)	intron (NM_027817, intron 2 of 4)	8032.0	NM_027817	71520.0	Mm.202760	NM_027817	ENSMUSG00000004837	Grap	8430435N19Rik|BB233594	GRB2-related adaptor protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-32321993-2	chr14	32321893	32322093	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081130)	promoter-TSS (NM_001081130)	-26.0	NM_001081130	239017.0	Mm.318302	NM_001081130	ENSMUSG00000021913	Ogdhl	-	oxoglutarate dehydrogenase-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111040035-4	chr12	111039890	111040090	+	910.6749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_198023, exon 2 of 12)	exon (NM_198023, exon 2 of 12)	192.0	NM_198023	217864.0	Mm.23808	NM_198023	ENSMUSG00000037896	Rcor1	5730409O11|6720480E22Rik|AU042633|D12Wsu95e|Rocr1|mKIAA0071	REST corepressor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-119997900-1	chr9	119997800	119998000	+	887.0	f1_balb.idr	Intergenic	B3|SINE|B2	-13158.0	NM_153287	215418.0	Mm.491094	NM_153287	ENSMUSG00000032515	Csrnp1	4931429D10Rik|Axud1|CSRNP-1|URAX1|taip-3	cysteine-serine-rich nuclear protein 1	protein-coding	0.555847064463819	0.202372948768708	0.859540589033899	0.719606607868224	0.454812571072103	0.20375227859262	0.197602599667179	0.19235370516819	-2.599105309929	0.197629792591967	1
Merged-chr7-64374076-4	chr7	64373968	64374168	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177893)	promoter-TSS (NM_177893)	27.0	NM_177893	330554.0	Mm.236510	NM_177893	ENSMUSG00000033458	Fan1	6030441H18Rik|Mtmr15|mFAN1	FANCD2/FANCI-associated nuclease 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-76303131-2	chr5	76303031	76303231	+	620.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007715, intron 2 of 22)	intron (NM_007715, intron 2 of 22)	371.0	NM_001305222	12753.0	Mm.3552	NM_007715	ENSMUSG00000029238	Clock	5330400M04Rik|KAT13D	circadian locomotor output cycles kaput	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-17675911-2	chr12	17675811	17676011	+	628.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14898.0	NM_001361645	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-11503286-4	chr2	11503190	11503390	+	971.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177758, intron 1 of 14)	CpG	-1200.0	NM_001177757	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-17896210-4	chr17	17896127	17896327	+	992.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8403.0	NM_008039	14289.0	Mm.378918	NM_008039	ENSMUSG00000052270	Fpr2	E330010I07Rik|Fpr-rs2	formyl peptide receptor 2	protein-coding	2.79008433435194	2.45638442256477	2.78558023282364	2.18453182728372	2.32390347919208	2.59682144416794	2.26158229935238	1.88449571506219	-0.653914276220998	0.412640540082904	0.894783826796838
Merged-chr16-91633829-2	chr16	91633765	91633965	+	677.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357351, intron 11 of 21)	intron (NM_001357351, intron 11 of 21)	13107.0	NM_010256	14450.0	Mm.4505	NM_010256	ENSMUSG00000022962	Gart	Gaps|Prgs	phosphoribosylglycinamide formyltransferase	protein-coding	1.45782010315434	1.14762717444213	2.24468188318497	1.86114661269605	1.34843050691	1.15529300142949	1.12074393652187	0.873836490490536	-2.22115259477399	0.0751273130207327	0.415508989684735
Merged-chr2-144217441-4	chr2	144217342	144217542	+	941.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28152.0	NR_136884	433481.0	Mm.330630	NR_136884	ENSMUSG00000074758	Gm5535	EG433481	predicted gene 5535	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-66121223-4	chr7	66121126	66121326	+	807.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081163, intron 1 of 2)	intron (NM_001081163, intron 1 of 2)	11711.0	NM_001081163	269941.0	Mm.333916	NM_001081163	ENSMUSG00000032640	Chsy1	mKIAA0990	chondroitin sulfate synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-82913233-4	chr18	82913091	82913291	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183033, intron 1 of 5)	intron (NM_183033, intron 1 of 5)	-1441.0	NM_001177464	329003.0	Mm.326526	NM_183033	ENSMUSG00000058881	Zfp516	C330029B10Rik|D230016L03|Zfp26l|Znf516|mKIAA0222	zinc finger protein 516	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81197647-2	chr10	81197547	81197747	+	660.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_027120)	TTS (NM_027120)	2956.0	NR_015477	69678.0	Mm.81562	NR_015477		Atcayos	2310050B05Rik	ataxia, cerebellar, Cayman type, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-45872389-4	chr1	45872271	45872471	+	768.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53223.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-22425144-2	chr17	22425044	22425244	+	774.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001331197, intron 1 of 5)	RLTR9E|LTR|ERVK	942.0	NM_001331198	74149.0	Mm.30767	NM_198003	ENSMUSG00000071266	Zfp946	1300003B13Rik	zinc finger protein 946	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70461107-2	chr11	70461007	70461207	+	708.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001348337, exon 2 of 14)	exon (NM_001348337, exon 2 of 14)	-1123.0	NM_023158	66102.0	Mm.425692	NM_023158	ENSMUSG00000018920	Cxcl16	0910001K24Rik|AV290116|BB024863|CXCL16v1|CXCL16v2|SR-PSOX|Zmynd15|b2b498Clo	chemokine (C-X-C motif) ligand 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-46065778-2	chr11	46065693	46065893	+	565.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291890, intron 3 of 22)	intron (NM_001291890, intron 3 of 22)	9809.0	NM_001291891	11492.0	Mm.89940	NM_009616	ENSMUSG00000011256	Adam19	AL024287|MADDAM|MTLNB|Mltnb	a disintegrin and metallopeptidase domain 19 (meltrin beta)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-24594589-2	chr16	24594489	24594689	+	893.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 4 of 12)	intron (NM_178665, intron 4 of 12)	65275.0	NR_038091	624582.0	Mm.439775	NR_038091		Morf4l1-ps1	A730098P11Rik	mortality factor 4 like 1, pseudogene 1	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123027182-2	chr5	123027082	123027282	+	937.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175423, intron 1 of 1)	ID_B1|SINE|B4	12108.0	NM_175423	109305.0	Mm.218582	NM_175423	ENSMUSG00000049686	Orai1	D730049H07Rik|Tmem142a|orai-1	ORAI calcium release-activated calcium modulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-91733133-2	chr12	91733033	91733233	+	777.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 3 of 6)	intron (NM_175367, intron 3 of 6)	53303.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-9820591-2	chr18	9820491	9820691	+	953.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_130449, intron 2 of 9)	B3A|SINE|B2	112943.0	NM_130449	140792.0	Mm.218571	NM_130449	ENSMUSG00000036103	Colec12	CL-P1|SRCL|Scara4	collectin sub-family member 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-59322935-3	chr7	59322821	59323021	+	748.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_146211, intron 166 of 171)	ORR1F|LTR|ERVL-MaLR	24503.0	NR_146600	102642160.0		NR_146600		Gm22496	-	predicted gene, 22496	snoRNA	-0.615199253409485	-0.847850756076199	-0.852543267469836	-0.704572031078934	-0.609365715699889	-0.84534768159575	-0.852001820715513	-0.702115704238587	0.0371181303275201	0.98909404214881	1
Merged-chr16-10990693-2	chr16	10990593	10990793	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019980, intron 1 of 3)	intron (NM_019980, intron 1 of 3)	2428.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28702869-4	chr17	28702779	28702979	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168514, intron 2 of 12)	intron (NM_001168514, intron 2 of 12)	10311.0	NM_001357724	26416.0	Mm.311337	NM_011951	ENSMUSG00000053436	Mapk14	CSBP2|Crk1|Csbp1|Mxi2|PRKM14|PRKM15|p38|p38-alpha|p38MAPK|p38a|p38alpha	mitogen-activated protein kinase 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-115614554-3	chr12	115614406	115614606	+	665.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	81288.0	NR_105810	102465205.0		NR_105810	ENSMUSG00000098336	Mir6388	Gm27925|mmu-mir-6388	microRNA 6388	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-99138515-2	chr9	99138415	99138615	+	595.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029094, intron 1 of 23)	intron (NM_029094, intron 1 of 23)	1696.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-88356372-2	chr10	88356272	88356472	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027878, intron 1 of 6)	PB1D9|SINE|Alu	703.0	NM_027878	71712.0	Mm.35450	NM_027878	ENSMUSG00000020057	Dram1	1200002N14Rik|Dram	DNA-damage regulated autophagy modulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45868903-2	chr7	45868803	45869003	+	633.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2222.0	NM_008172	14814.0	Mm.322594	NM_008172	ENSMUSG00000002771	Grin2d	GluN2D|NMDAR2D|NR2D	glutamate receptor, ionotropic, NMDA2D (epsilon 4)	protein-coding	-0.366626417179347	-0.352692175281507	-0.357249875608969	0.28625245588711	-0.365754612910758	-0.35166575818681	-0.356244039914784	0.294119739107777	0.0282770312316891	0.991511101680898	1
Merged-chr9-54559564-2	chr9	54559464	54559664	+	711.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019686, intron 1 of 5)	intron (NM_019686, intron 1 of 5)	515.0	NM_019686	56506.0	Mm.42192	NM_019686	ENSMUSG00000037493	Cib2	2810434I23Rik|AI449053	calcium and integrin binding family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-58027587-1	chr1	58027487	58027687	+	546.0	f1_c57bl6.idr	Intergenic	Intergenic	-2382.0	NM_009676	11761.0	Mm.26787	NM_009676	ENSMUSG00000063558	Aox1	AI196512|AI255253|Ao|Aox-1|Aox-2|Aox2|Moro|Ro	aldehyde oxidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33793358-3	chr16	33793241	33793441	+	917.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010739)	promoter-TSS (NM_010739)	-696.0	NM_010739	17063.0	Mm.3177	NM_010739	ENSMUSG00000022824	Muc13	114/A10|14/A10|AI159736|Lrrp|Ly64|NJ-1	mucin 13, epithelial transmembrane	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-101925843-2	chr5	101925743	101925943	+	659.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 18 of 66)	intron (NM_172882, intron 18 of 66)	144078.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-98782187-2	chr10	98782087	98782287	+	924.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-132455.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-123933318-2	chr1	123933177	123933377	+	708.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_199021, intron 1 of 25)	L1_Mus2|LINE|L1	112282.0	NM_199021	269109.0	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27561799-2	chr2	27561699	27561899	+	872.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46652.0	NM_080848	140858.0	Mm.28265	NM_080848	ENSMUSG00000026917	Wdr5	2410008O07Rik|AA408785|AA960360|Big|Big-3	WD repeat domain 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-118709117-1	chr10	118709017	118709217	+	1000.0	f0_balb.idr	Intergenic	Intergenic	-152592.0	NR_104123	103214.0	Mm.30529	NR_104123	ENSMUSG00000112230	Ifngas1	AI447422|Tmevpg1	Ifng antisense RNA 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166457558-4	chr2	166457446	166457646	+	922.8250119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015558, intron 2 of 2)	intron (NR_015558, intron 2 of 2)	10095.0	NR_015558	319684.0	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-23560031-1	chr17	23559931	23560131	+	846.0	f1_c57bl6.idr	exon (NM_001033496, exon 3 of 6)	exon (NM_001033496, exon 3 of 6)	4195.0	NM_001033496	449521.0	Mm.268582	NM_001033496	ENSMUSG00000071256	Zfp213	BC038178|D17Ertd197e	zinc finger protein 213	protein-coding	0.101719185102936	-0.229271609183647	-0.233061757588235	0.254117726778852	0.00775316256636215	-0.228413959422512	-0.23222786277708	-0.0836583585786525	-1.21346841644019	0.599227076097011	1
Merged-chr14-76288662-2	chr14	76288562	76288762	+	572.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37200.0	NR_152108	72893.0	Mm.233565	NR_152108		2900040C04Rik	-	RIKEN cDNA 2900040C04 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-92852089-2	chr16	92851989	92852189	+	912.3333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-26015.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-47075278-3	chr11	47075129	47075329	+	911.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011891, intron 6 of 7)	intron (NM_011891, intron 6 of 7)	264430.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	-0.063401915996064	-0.419614651085916	0.235944414192043	-0.426497770051639	-0.287215332492868	-0.418736917075018	-0.422646388884957	-0.425975015396143	-2.64015732745536	0.297319917711469	1
Merged-chr7-133115154-3	chr7	133115059	133115259	+	726.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009980, intron 1 of 10)	intron (NM_009980, intron 1 of 10)	8324.0	NM_009980	13017.0	Mm.246240	NM_009980	ENSMUSG00000030970	Ctbp2	AA407280|D7Ertd45e|Gtrgeo6|Ribeye	C-terminal binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-47339246-2	chr19	47339146	47339346	+	855.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008018, intron 6 of 14)	L2a|LINE|L2	-65657.0	NR_105961	102466782.0		NR_105961	ENSMUSG00000098786	Mir6995	Gm27576|mmu-mir-6995	microRNA 6995	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117872797-4	chr10	117872709	117872909	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26835.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-143907246-3	chr7	143907159	143907359	+	904.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER4B|LTR|ERVK	-25856.0	NR_105830	102465217.0		NR_105830	ENSMUSG00000099321	Mir6404	Gm28014|mmu-mir-6404	microRNA 6404	ncRNA	1.81509006584882	2.87127502162592	2.92529893628214	2.61009855198785	1.83032873716154	2.05563357860453	2.28178567359736	1.29020331648904	-1.63381223982376	0.0738763280574049	0.410891375174802
Merged-chr16-38397426-2	chr16	38397326	38397526	+	580.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_134102, exon 10 of 11)	exon (NM_134102, exon 10 of 11)	35236.0	NM_022318	64082.0	Mm.390856	NM_022318	ENSMUSG00000022803	Popdc2	AV006127|Pop2	popeye domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-89580482-2	chr1	89580382	89580582	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037136, intron 1 of 16)	CpG	103410.0	NR_015540	74403.0	Mm.444291	NR_015540		4933400F21Rik	1700091C04Rik|4930565K10Rik	RIKEN cDNA 4933400F21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-77034866-4	chr16	77034754	77034954	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013918, intron 2 of 23)	MIR|SINE|MIR	20785.0	NM_013918	30940.0	Mm.40986	NM_013918	ENSMUSG00000022867	Usp25	-	ubiquitin specific peptidase 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-82042906-3	chr6	82042747	82042947	+	647.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145570, intron 1 of 2)	intron (NM_145570, intron 1 of 2)	1219.0	NM_145570	232146.0	Mm.489683	NM_145570	ENSMUSG00000035104	Eva1a	BC014699|Fam176a|Tmem166	eva-1 homolog A (C. elegans)	protein-coding	2.18245524058499	1.94684019663677	1.52894741274392	1.97188134851372	2.36519483119302	2.36046850912144	1.53831086875178	2.40138666531071	0.739011862102573	0.432293965584271	0.904679012727573
Merged-chr2-58281284-3	chr2	58281183	58281383	+	944.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040365, exon 3 of 4)	non-coding (NR_040365, exon 3 of 4)	4504.0	NR_040365	100502932.0	Mm.417207	NR_040365	ENSMUSG00000086995	Gm13544	-	predicted gene 13544	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-76216626-2	chr11	76216525	76216725	+	671.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021294)	promoter-TSS (NM_021294)	947.0	NM_177367	276919.0	Mm.482713	NM_177367	ENSMUSG00000049396	Gemin4	4932415L08Rik|AU015359	gem nuclear organelle associated protein 4	protein-coding	0.414187732735552	1.21778117206812	0.125903439682535	0.119789278695414	0.545342540235711	0.357669216160348	0.127642081025649	0.120861082069344	-1.55533401526108	0.426872526147562	1
Merged-chr11-95001273-4	chr11	95001132	95001332	+	701.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172261, exon 5 of 10)	exon (NM_172261, exon 5 of 10)	-8647.0	NM_146025	217125.0	Mm.297199	NM_146025	ENSMUSG00000047181	Samd14	AI839049|AI854782|BC034054	sterile alpha motif domain containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-19187454-2	chr3	19187354	19187554	+	659.666687	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026182)	promoter-TSS (NM_026182)	134.0	NM_001253391	67472.0	Mm.45125	NM_026182	ENSMUSG00000027601	Mtfr1	1300002C08Rik|1700080D04Rik|2810026O10Rik|4930579E05Rik|Chppr|Fam54a2	mitochondrial fission regulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-53820858-3	chr11	53820752	53820952	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033332, intron 2 of 3)	intron (NR_033332, intron 2 of 3)	38404.0	NR_033332	622459.0	Mm.479656	NR_033332	ENSMUSG00000081769	Gm12216	602-19-115	predicted gene 12216	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97946078-4	chr11	97945996	97946196	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163608, intron 7 of 13)	MTD|LTR|ERVL-MaLR	40350.0	NM_028199	72324.0	Mm.39617	NM_028199	ENSMUSG00000017417	Plxdc1	2410003I07Rik|AI848450|Tem7	plexin domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-77466587-2	chr11	77466487	77466687	+	955.833374	f1_balb.idr|f1_c57bl6.idr	exon (NM_139130, exon 4 of 10)	exon (NM_139130, exon 4 of 10)	2674.0	NM_139130	216961.0	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-52941988-1	chr18	52941888	52942088	+	542.0	f1_c57bl6.idr	Intergenic	Intergenic	173844.0	NM_001199154	67847.0	Mm.292168	NM_026408	ENSMUSG00000024534	Sncaip	2810407O15Rik|4933427B05Rik|BB104594|SYPH1	synuclein, alpha interacting protein (synphilin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-111972656-4	chr10	111972550	111972750	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178610)	promoter-TSS (NM_178610)	-45.0	NM_178610	52705.0	Mm.34606	NM_178610	ENSMUSG00000063334	Krr1	2610511F02Rik|AI255219|AI428520|D10Ertd773e|Hrb2	KRR1, small subunit (SSU) processome component, homolog (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-82797607-4	chr6	82797498	82797698	+	975.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23144.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-140971652-2	chr7	140971532	140971732	+	661.375	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3556.0	NM_001360728	68713.0	Mm.175661	NM_026820	ENSMUSG00000025491	Ifitm1	1110036C17Rik|DSPA2a|Mil-2|Mil2	interferon induced transmembrane protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-72657692-1	chr2	72657592	72657792	+	549.0	f1_c57bl6.idr	Intergenic	Intergenic	-45818.0	NR_040503	74541.0	Mm.410774	NR_040503	ENSMUSG00000085252	8430437L04Rik	-	RIKEN cDNA 8430437L04 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-37529423-2	chr9	37529275	37529475	+	562.416626	f1_balb.idr|f1_c57bl6.idr	intron (NR_136939, intron 1 of 6)	intron (NR_136939, intron 1 of 6)	1286.0	NM_027102	69524.0	Mm.41751	NM_027102	ENSMUSG00000001946	Esam	2310008D05Rik|Esam1|W117m	endothelial cell-specific adhesion molecule	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135144437-4	chr5	135144335	135144535	+	834.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5276.0	NM_013763	27368.0	Mm.36746	NM_013763	ENSMUSG00000005374	Tbl2	C76179|WS-bTRP	transducin (beta)-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-12778959-2	chr17	12778859	12779059	+	659.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_027773, intron 1 of 2)	intron (NR_027773, intron 1 of 2)	-9253.0	NM_010515	16004.0	Mm.26553	NM_010515	ENSMUSG00000023830	Igf2r	AI661837|CD222|CI-MPR|M6P/IGF2R|Mpr300	insulin-like growth factor 2 receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-88908786-2	chr6	88908686	88908886	+	563.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011906, intron 4 of 11)	intron (NM_011906, intron 4 of 11)	6535.0	NM_011906	24100.0	Mm.284480	NM_011906	ENSMUSG00000002871	Tpra1	40kDa|Gpr175|Tpra40	transmembrane protein, adipocyte asscociated 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-51476260-2	chr1	51476160	51476360	+	776.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_028696, intron 2 of 5)	intron (NM_028696, intron 2 of 5)	2139.0	NM_001310548	109019.0	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-77368957-3	chr11	77368834	77369034	+	757.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291190, intron 1 of 13)	intron (NM_001291190, intron 1 of 13)	20654.0	NM_001291190	237860.0	Mm.440381	NM_177710	ENSMUSG00000037926	Ssh2	SSH-2|SSH-2L|mSSH-2L	slingshot protein phosphatase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-95887863-2	chr8	95887739	95887939	+	638.833374	f0_balb.idr|f0_c57.idr	intron (NM_010325, intron 1 of 9)	intron (NM_010325, intron 1 of 9)	526.0	NM_010325	14719.0	Mm.230169	NM_010325	ENSMUSG00000031672	Got2	AL022787|FABP-pm|Got-2|Kyat4|mAspAT	glutamatic-oxaloacetic transaminase 2, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10697409-2	chr19	10697309	10697509	+	604.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361958, intron 1 of 4)	L1MEc|LINE|L1	-3359.0	NM_001361964	107305.0	Mm.19091	NM_181403	ENSMUSG00000048832	Vps37c	5730409F24Rik|AU042646	vacuolar protein sorting 37C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-6718848-2	chr10	6718748	6718948	+	966.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR11C_MM|LTR|ERVK	-39745.0	NM_001302794	18390.0	Mm.438000	NM_011013	ENSMUSG00000000766	Oprm1	M-OR-1|MOP-R|MOR-1|MOR-1O|Oprm|mor|muOR	opioid receptor, mu 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-12377024-3	chr15	12376954	12377154	+	867.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081064, intron 18 of 23)	intron (NM_001081064, intron 18 of 23)	55558.0	NM_025673	66629.0	Mm.157655	NM_025673	ENSMUSG00000022200	Golph3	4733401N08Rik|5730410D03Rik|AW413496	golgi phosphoprotein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-37206890-6	chr19	37206803	37207003	+	973.2222289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164337)	promoter-TSS (NM_001164337)	568.0	NM_198300	208922.0	Mm.391176	NM_198300	ENSMUSG00000039652	Cpeb3	4831444O18Rik|CPE-BP3|mKIAA0940	cytoplasmic polyadenylation element binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-86354921-2	chr1	86354821	86355021	+	743.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010880, intron 7 of 13)	intron (NM_010880, intron 7 of 13)	1406.0	NR_002851	80828.0		NR_002851	ENSMUSG00000064823	Snord82	Rnu82|U82|Z25	small nucleolar RNA, C/D box 82	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85051400-2	chr12	85051300	85051500	+	649.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347421, intron 15 of 19)	intron (NM_001347421, intron 15 of 19)	44215.0	NM_001361239	73422.0	Mm.311944	NM_175198	ENSMUSG00000042320	Prox2	1700058C01Rik	prospero homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-37430078-4	chr6	37430003	37430203	+	823.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178661, intron 1 of 11)	intron (NM_178661, intron 1 of 11)	12045.0	NM_178661	208647.0	Mm.169929	NM_178661	ENSMUSG00000038648	Creb3l2	BBF2H7|C530025K05Rik|SCIRR69	cAMP responsive element binding protein 3-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-100023441-2	chr12	100023341	100023541	+	713.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164426, intron 2 of 2)	B4A|SINE|B4	58942.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-20830859-2	chr1	20830759	20830959	+	731.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10547.0	NM_008563	17215.0	Mm.4502	NM_008563	ENSMUSG00000041859	Mcm3	AL033361|C80350|Mcmd|P1|P1-MCM3|p1.m	minichromosome maintenance complex component 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131017357-4	chr1	131017258	131017458	+	995.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2487.0	NM_010548	16153.0	Mm.874	NM_010548	ENSMUSG00000016529	Il10	CSIF|Il-10	interleukin 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-113580486-4	chr13	113580398	113580598	+	944.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38066.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-80041199-1	chr11	80041099	80041299	+	617.0	f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	39792.0	NM_001277106	54394.0	Mm.272093	NM_018776	ENSMUSG00000017561	Crlf3	BB164954|Creme9|Cytor4	cytokine receptor-like factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-97210178-4	chr7	97210078	97210278	+	788.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162477, intron 1 of 9)	intron (NM_001162477, intron 1 of 9)	115786.0	NM_001177412	244144.0	Mm.297541	NM_001177412	ENSMUSG00000035713	Usp35	Gm1088|Gm493	ubiquitin specific peptidase 35	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-96332419-2	chr10	96332319	96332519	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	106212.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-75788449-2	chr7	75788326	75788526	+	584.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59912.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-43930662-4	chr19	43930521	43930721	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028029, intron 1 of 15)	intron (NM_028029, intron 1 of 15)	9577.0	NM_028029	71972.0	Mm.159024	NM_028029	ENSMUSG00000025195	Dnmbp	2410003L07Rik|2410003M15Rik|TUBA	dynamin binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171101859-2	chr1	171101755	171101955	+	796.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	tRNA-Leu-CTG|tRNA|tRNA	-19806.0	NM_001081275	75472.0	Mm.32760	NM_029301	ENSMUSG00000026649	Cfap126	1700009P17Rik|AV282292|Flattop|Fltp	cilia and flagella associated protein 126	protein-coding	2.45852325197556	2.6827935916162	2.40236515071526	2.42707367130536	2.31840990117992	1.29472032651426	1.26357211172323	1.67927705235064	-1.89327881468565	0.0558885101094416	0.348398169878635
Merged-chr8-11249989-4	chr8	11249872	11250072	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009931, intron 2 of 51)	intron (NM_009931, intron 2 of 51)	-62833.0	NM_009932	12827.0	Mm.181021	NM_009932	ENSMUSG00000031503	Col4a2	Col4a-2	collagen, type IV, alpha 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-53261315-2	chr19	53261215	53261415	+	586.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6110.0	NR_036590	69319.0	Mm.57452	NR_036590		1700001K23Rik	-	RIKEN cDNA 1700001K23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-4258929-4	chr11	4258835	4259035	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008501, intron 1 of 3)	intron (NM_008501, intron 1 of 3)	1367.0	NM_008501	16878.0	Mm.4964	NM_008501	ENSMUSG00000034394	Lif	-	leukemia inhibitory factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-84680703-4	chr18	84680597	84680797	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023149, intron 3 of 11)	intron (NM_023149, intron 3 of 11)	1362.0	NM_001289531	66054.0	Mm.29646	NM_023149	ENSMUSG00000024644	Cndp2	0610010E05Rik|C76600|Cn2|Dip-2|Pep-1|Pep1	CNDP dipeptidase 2 (metallopeptidase M20 family)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-125433486-2	chr5	125433386	125433586	+	824.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_203319, intron 1 of 26)	intron (NM_203319, intron 1 of 26)	562.0	NM_203319	208144.0	Mm.296385	NM_203319	ENSMUSG00000029480	Dhx37	Gm1050|Gm451|mKIAA1517	DEAH (Asp-Glu-Ala-His) box polypeptide 37	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-119339472-3	chr8	119339354	119339554	+	947.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5084.0	NM_024219	68196.0	Mm.358714	NM_024219	ENSMUSG00000031839	Hsbp1	0610007A03Rik|AA408769|Hsp25	heat shock factor binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-90661620-4	chr5	90661519	90661719	+	929.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21092.0	NM_001310656	73246.0	Mm.30172	NM_028478	ENSMUSG00000029370	Rassf6	1600016B17Rik	Ras association (RalGDS/AF-6) domain family member 6	protein-coding	-0.0978675797001849	-0.240473737105157	-0.246202328185535	0.0857491839724979	-0.256976217376288	-0.239187828453945	-0.244935443118491	0.778214874628865	1.67110519913955	0.476275238851979	1
Merged-chr17-23551103-3	chr17	23551000	23551200	+	830.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_126484, intron 1 of 1)	intron (NR_126484, intron 1 of 1)	301.0	NR_126484	320020.0	Mm.445111	NR_126484		6330415G19Rik	-	RIKEN cDNA 6330415G19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-106366370-2	chr9	106366271	106366471	+	612.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2261.0	NM_153459	235584.0	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	-1.06997269762433	-1.30473905204845	-1.3145270772132	-1.32256725251374	-1.06385251204029	-1.30261794616352	-1.3123112828633	-1.32112806497905	0.0394047164033882	0.991001358494878	1
Merged-chr10-127670577-2	chr10	127670477	127670677	+	733.599976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3454.0	NR_045171	72243.0	Mm.482902	NR_045171	ENSMUSG00000040195	1700012D01Rik	-	RIKEN cDNA 1700012D01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-43386121-2	chr11	43386021	43386221	+	685.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11660.0	NR_029558	387164.0		NR_029558	ENSMUSG00000065601	Mir146	Mirn146|miR-146a|mmu-mir-146	microRNA 146	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-35111744-2	chr2	35111644	35111844	+	815.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_012018, exon 2 of 44)	exon (NM_012018, exon 2 of 44)	2252.0	NM_012018	26920.0	Mm.231332	NM_012018	ENSMUSG00000057110	Cntrl	6720467O09Rik|AA968343|Cep1|Cep110|IB3/5|Ma2a8|b2b1468.1Clo|b2b1468Clo	centriolin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-79875712-2	chr10	79875612	79875812	+	895.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 3 of 4)	intron (NR_038088, intron 3 of 4)	-1078.0	NR_033210	216152.0	Mm.29678	NM_181681	ENSMUSG00000035835	Plppr3	Lppr3|Prg2	phospholipid phosphatase related 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-24709881-2	chr18	24709781	24709981	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289654, intron 1 of 24)	CpG	1258.0	NM_001289655	225288.0	Mm.329322	NM_175276	ENSMUSG00000034295	Fhod3	A930009H06Rik|FHOS2|mKIAA1695	formin homology 2 domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127641984-4	chr10	127641896	127642096	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009284)	promoter-TSS (NM_009284)	-990.0	NM_009284	20852.0	Mm.121721	NM_009284	ENSMUSG00000002147	Stat6	-	signal transducer and activator of transcription 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-76321696-2	chr16	76321610	76321810	+	688.833374	f0_balb.idr|f0_c57.idr	intron (NM_001358238, intron 3 of 3)	intron (NM_001358238, intron 3 of 3)	51339.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25247999-2	chr7	25247899	25248099	+	848.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010155, intron 1 of 3)	intron (NM_010155, intron 1 of 3)	2759.0	NM_010155	13875.0	Mm.8068	NM_010155	ENSMUSG00000040857	Erf	-	Ets2 repressor factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126747647-4	chr8	126747542	126747742	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-101378.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-33945151-1	chr1	33945051	33945251	+	607.0	f0_balb.idr	intron (NM_001276764, intron 2 of 102)	intron (NM_001276764, intron 2 of 102)	36926.0	NM_001276764	13518.0	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33625740-3	chr16	33625621	33625821	+	702.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083902, intron 8 of 11)	ORR1F|LTR|ERVL-MaLR	-58745.0	NM_175256	77446.0	Mm.245741	NM_172934	ENSMUSG00000075254	Heg1	4632417D23Rik|5530401I02Rik|9530025L16Rik|BC038614|Gm629	heart development protein with EGF-like domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-137887063-2	chr5	137886963	137887163	+	748.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15305.0	NM_001024932	545812.0	Mm.332769	NM_001024932	ENSMUSG00000066682	Pilrb2	EG545812	paired immunoglobin-like type 2 receptor beta 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-172519713-1	chr1	172519613	172519813	+	572.0	f1_balb.idr	Intergenic	Arthur1B|DNA|hAT-Tip100	-1417.0	NM_027972	71870.0	Mm.78373	NM_027972	ENSMUSG00000026546	Cfap45	1700028D05Rik|Ccdc19|Nesg1	cilia and flagella associated protein 45	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-21681993-2	chr16	21681893	21682093	+	656.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001881, intron 1 of 1)	RLTR30E_MM|LTR|ERV1	12672.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-174473066-4	chr2	174472974	174473174	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025531)	promoter-TSS (NM_025531)	-133.0	NM_025531	66390.0	Mm.182294	NM_025531	ENSMUSG00000016257	Prelid3b	2310042G06Rik|AA407013|Slmo2	PRELI domain containing 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-48528298-2	chr13	48528198	48528398	+	679.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7816.0	NR_029656	387247.0		NR_029656	ENSMUSG00000065453	Mirlet7d	Mirnlet7d|let-7d|mmu-let-7d	microRNA let7d	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-100060990-2	chr15	100060890	100061090	+	926.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159361, intron 1 of 37)	intron (NM_001159361, intron 1 of 37)	22326.0	NM_001159361	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-104289655-3	chr11	104289710	104289910	+	873.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038609, intron 3 of 11)	intron (NM_001038609, intron 3 of 11)	58374.0	NM_001285454	17762.0	Mm.1287	NM_010838	ENSMUSG00000018411	Mapt	AI413597|AW045860|Mtapt|Tau	microtubule-associated protein tau	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-108954433-2	chr7	108954333	108954533	+	983.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	20018.0	NM_025344	66085.0	Mm.182962	NM_025344	ENSMUSG00000031029	Eif3f	0610037M02Rik|AA409853|Eif3s5	eukaryotic translation initiation factor 3, subunit F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-166940359-1	chr1	166940259	166940459	+	560.0	f0_c57.idr	Intergenic	IAPLTR2_Mm|LTR|ERVK	59371.0	NR_037988	100503962.0	Mm.216842	NR_037988	ENSMUSG00000102548	Gm16701	-	predicted gene, 16701	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-29254120-1	chr7	29254020	29254220	+	541.0	f1_c57bl6.idr	Intergenic	Intergenic	-5653.0	NM_028179	72275.0	Mm.441142	NM_028179	ENSMUSG00000030587	2200002D01Rik	2010005J02Rik|H2RSP|IMUP|IMUP-1|IMUP-2	RIKEN cDNA 2200002D01 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124829490-4	chr6	124829384	124829584	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001326594)	promoter-TSS (NM_001326594)	0.0	NM_001326594	22225.0	Mm.3571	NM_013700	ENSMUSG00000038429	Usp5	AA407472|ISOT|ISOT-1|Ucht	ubiquitin specific peptidase 5 (isopeptidase T)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-52625197-1	chr12	52625097	52625297	+	1000.0	f0_balb.idr	Intergenic	G-rich|Low_complexity|Low_complexity	-22875.0	NR_045910	73278.0	Mm.396209	NR_045910	ENSMUSG00000100315	1700031P21Rik	-	RIKEN cDNA 1700031P21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70784256-3	chr14	70784135	70784335	+	706.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9854.0	NM_010071	13449.0	Mm.243323	NM_010071	ENSMUSG00000022102	Dok2	DokR|Frip|dok-R	docking protein 2	protein-coding	2.29950817917088	1.40274433906438	2.13945906066567	2.89122591008039	2.11322906427996	2.22855786939703	2.51204501646511	2.21828271158141	-0.0714785029183452	0.937022231691871	0.998431161219273
Merged-chr19-44388645-4	chr19	44388553	44388753	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19056.0	NM_009127	20249.0	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	5.99892662747311	6.1575597835643	6.50540034655788	5.91481143729796	5.78271306741136	6.19370226591002	6.29292673874888	5.38473625542638	-0.229334477177935	0.376551473782718	0.869600522734195
Merged-chr12-102456611-4	chr12	102456486	102456686	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-12548.0	NM_001199004	27277.0	Mm.273370	NM_013747	ENSMUSG00000021192	Golga5	Ret-II	golgi autoantigen, golgin subfamily a, 5	protein-coding	6.41496897589536	5.94768055096681	5.80575225973892	5.52034619947414	6.80308424434766	6.16467312682423	5.46445989369994	5.43534028351746	0.14101103994736	0.65819649737802	0.988704682801132
Merged-chr7-123296344-2	chr7	123296244	123296444	+	570.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001316713, intron 15 of 19)	intron (NM_001316713, intron 15 of 19)	73571.0	NM_001122643	70497.0	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-75141677-4	chr1	75141554	75141754	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356264)	promoter-TSS (NM_001356264)	37.0	NM_001356264	69171.0	Mm.28193	NM_026977	ENSMUSG00000033159	Cnppd1	1810031K17Rik|AU043960	cyclin Pas1/PHO80 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-66149375-7	chr5	66149279	66149479	+	765.195251	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127382, intron 2 of 7)	B1F2|SINE|Alu	1599.0	NM_001291226	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	2.86886139402098	2.60061780218052	2.38163072253453	3.01569748046677	2.73819134363258	2.61907691101793	2.39941688125734	2.78148448978713	-0.203318819968324	0.77531718526624	0.998431161219273
Merged-chr1-136127568-2	chr1	136127468	136127668	+	933.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_046167)	TTS (NR_046167)	3615.0	NR_046170	329253.0	Mm.487858	NR_046167	ENSMUSG00000086264	Gm15850	6530439I21	predicted gene 15850	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-38451209-4	chr2	38451109	38451309	+	835.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60488.0	NM_021606	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-89354693-2	chr15	89354593	89354793	+	799.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_178919, exon 2 of 14)	exon (NM_178919, exon 2 of 14)	966.0	NM_178919	105847.0	Mm.34511	NM_178919	ENSMUSG00000022614	Lmf2	AI451006|Tmem112b|Tmem153	lipase maturation factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-192087239-4	chr1	192087135	192087335	+	839.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011633, intron 1 of 9)	intron (NM_011633, intron 1 of 9)	5364.0	NM_011633	22033.0	Mm.380491	NM_011633		Traf5	-	TNF receptor-associated factor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-39526987-4	chr6	39526909	39527109	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172477, intron 1 of 18)	intron (NM_172477, intron 1 of 18)	30825.0	NM_172477	209773.0	Mm.440021	NM_172477	ENSMUSG00000038456	Dennd2a	B930096L08Rik|C130031G22|mKIAA1277	DENN/MADD domain containing 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118454013-4	chr11	118453924	118454124	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045902, intron 1 of 2)	L1MB8|LINE|L1	971.0	NR_045902	100126224.0	Mm.441989	NR_045902	ENSMUSG00000086514	Gm11747	-	predicted gene 11747	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-54120124-2	chr10	54120024	54120224	+	789.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR88b|LTR|Gypsy?	44202.0	NR_038016	100502920.0	Mm.403982	NR_038016	ENSMUSG00000097069	Gm16998	-	predicted gene, 16998	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-132794655-4	chr1	132794571	132794771	+	808.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52874.0	NM_001160317	269116.0	Mm.326702	NM_182716	ENSMUSG00000026442	Nfasc	AA387016|D430023G06Rik|NF|mKIAA0756	neurofascin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-121496778-4	chr10	121496670	121496870	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A|LTR|ERVL-MaLR	-20520.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	2.53047332334982	1.38102602948449	1.62556623113611	2.87093616774461	2.96905821713594	3.60685765670165	3.42859953859819	1.29676692122278	1.48962642204436	0.114724849421728	0.530908489339892
Merged-chr15-57037339-4	chr15	57037253	57037453	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	227808.0	NM_001357930	210463.0	Mm.26555	NM_172378	ENSMUSG00000022366	Slc22a22	oat-pg	solute carrier family 22 (organic cation transporter), member 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-122302350-2	chr3	122302250	122302450	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8647.0	NR_030439	791077.0		NR_030439	ENSMUSG00000076456	Mir760	Mirn760|mir-760|mmu-mir-760	microRNA 760	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-68901482-4	chr11	68901363	68901563	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_003373)	promoter-TSS (NR_003373)	-103.0	NM_009080	19941.0	Mm.3229	NM_009080	ENSMUSG00000060938	Rpl26	SIG-20	ribosomal protein L26	protein-coding	0.739230338859432	0.463416483647538	0.453418325700379	1.48875170838362	1.08005540468881	0.465653245123026	0.455634298055249	1.05360107050069	-0.33538959472941	0.848057956297109	1
Merged-chr15-58692046-4	chr15	58691941	58692141	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2c|LINE|L2	131386.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117057747-2	chr8	117057647	117057847	+	953.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029686, intron 11 of 42)	intron (NM_029686, intron 11 of 42)	24702.0	NM_029686	76645.0	Mm.159753	NM_029686	ENSMUSG00000034416	Pkd1l2	1700126L06Rik	polycystic kidney disease 1 like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-121877581-4	chr14	121877475	121877675	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_130999, intron 1 of 1)	intron (NR_130999, intron 1 of 1)	695.0	NR_131002	78312.0	Mm.188743	NR_130999	ENSMUSG00000102112	1810041H14Rik	-	RIKEN cDNA 1810041H14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-32239389-2	chr19	32239289	32239489	+	864.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 4 of 9)	intron (NM_144792, intron 4 of 9)	-28376.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-51577650-2	chr11	51577550	51577750	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153393, intron 27 of 28)	intron (NM_153393, intron 27 of 28)	-7107.0	NM_028398	72947.0	Mm.256875	NM_028398	ENSMUSG00000020359	Phykpl	2900006B13Rik|Agxt2l2	5-phosphohydroxy-L-lysine phospholyase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35215197-2	chr17	35215097	35215297	+	746.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9846.0	NM_010735	16992.0	Mm.87787	NM_010735	ENSMUSG00000024402	Lta	LT|LT-[a]|LT-alpha|LT[a]|LTalpha|Ltx|TNF-beta|TNFSF1|Tnfb|Tnfsf1b|Tnlg1e|hlb382	lymphotoxin A	protein-coding	-0.885343988398316	-0.873197811915141	-0.879568534556306	-0.464008891048743	-0.884809499207366	-0.870535133016439	-0.878945546113603	-0.458408536970068	0.0285539633070526	0.992673327504828	1
Merged-chr8-47690799-4	chr8	47690695	47690895	+	915.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15636.0	NM_023503	69260.0	Mm.430733	NM_023503	ENSMUSG00000063049	Ing2	2810011M06Rik|Ing1l|Ing2b|P33ING2	inhibitor of growth family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-26220025-4	chr6	26219885	26220085	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13D5|LTR|ERVK	288559.0	NR_040771	626904.0	Mm.126787	NR_040771	ENSMUSG00000106799	Gm20756	-	predicted gene, 20756	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-100145328-4	chr13	100145234	100145434	+	960.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001126182, intron 15 of 15)	intron (NM_001126182, intron 15 of 15)	20479.0	NM_011420	20595.0	Mm.2025	NM_011420	ENSMUSG00000021645	Smn1	AI849087|Gemin1|Smn	survival motor neuron 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-172406339-4	chr2	172406236	172406436	+	997.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080820, intron 1 of 6)	intron (NM_001080820, intron 1 of 6)	12542.0	NM_001276423	320664.0	Mm.210195	NM_001033538	ENSMUSG00000074570	Cass4	F730031O20Rik	Cas scaffolding protein family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84701384-4	chr8	84701272	84701472	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008535)	promoter-TSS (NM_008535)	-85.0	NM_008535	17095.0	Mm.4925	NM_008535	ENSMUSG00000034041	Lyl1	Lyl-1|bHLHa18	lymphoblastomic leukemia 1	protein-coding	3.47253288828208	4.51060745291336	3.60416001515465	3.41049359377633	3.6437613715427	4.58820683265987	4.30403150256526	3.75635437390638	0.413457099090134	0.409840340228056	0.89372308288917
Merged-chr4-117863518-2	chr4	117863418	117863618	+	742.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_008135, exon 6 of 14)	exon (NM_008135, exon 6 of 14)	8952.0	NM_001034876	381546.0	Mm.440118	NM_001034876	ENSMUSG00000078588	Ccdc24	Gm1028	coiled-coil domain containing 24	protein-coding	-0.838744431111553	-0.967661477087529	-0.979195247021739	-0.981413585692039	-0.322556765592868	-0.965025449784594	-0.977071948914488	-0.981026153577555	2.05182173054401	0.510146656116524	1
Merged-chr11-61499355-4	chr11	61499263	61499463	+	974.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-5097.0	NM_001291034	23939.0	Mm.38172	NM_011841	ENSMUSG00000001034	Mapk7	BMK-1|BMK1|ERK-5|ERK5|Erk5-T|PRKM7|b2b2346Clo	mitogen-activated protein kinase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64323688-2	chr5	64323588	64323788	+	977.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 13 of 18)	intron (NM_001289514, intron 13 of 18)	93331.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-15956607-4	chr16	15956522	15956722	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355731, intron 9 of 18)	intron (NM_001355731, intron 9 of 18)	69336.0	NM_007679	12609.0	Mm.347407	NM_007679	ENSMUSG00000071637	Cebpd	c/EBPdelta	CCAAT/enhancer binding protein (C/EBP), delta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-23279958-4	chr1	23279843	23280043	+	872.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7674.0	NR_029533	387225.0		NR_029533	ENSMUSG00000065405	Mir30a	Mirn30a|mir-30a|mmu-mir-30a	microRNA 30a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-20967382-3	chr2	20967303	20967503	+	776.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081364, exon 1 of 24)	exon (NM_001081364, exon 1 of 24)	318.0	NM_001081364	71435.0	Mm.28507	NM_001081364	ENSMUSG00000036591	Arhgap21	5530401C11Rik|AA416458|ARHGAP10	Rho GTPase activating protein 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-82422249-4	chr18	82422153	82422353	+	958.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15476.0	NM_008082	14427.0	Mm.6219	NM_008082	ENSMUSG00000024553	Galr1	Galnr1	galanin receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119258681-3	chr11	119258631	119258831	+	861.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175430, intron 16 of 18)	MLT2B2|LTR|ERVL	-9232.0	NM_001159324	14387.0	Mm.4793	NM_008064	ENSMUSG00000025579	Gaa	E430018M07Rik	glucosidase, alpha, acid	protein-coding	3.19266536052509	3.23356001924503	3.45942218196841	3.88150252001328	3.52694728850747	2.44041696729856	1.63208719644387	2.94984527354494	-1.05187415877085	0.13587032930318	0.575761317746488
Merged-chr5-145207327-1	chr5	145207227	145207427	+	550.0	f1_balb.idr	intron (NM_001359191, intron 1 of 5)	intron (NM_001359191, intron 1 of 5)	2768.0	NM_001359188	22757.0	Mm.332842	NM_016683	ENSMUSG00000055991	Zkscan5	AI132486|AI326970|Zfp95|hKraba1	zinc finger with KRAB and SCAN domains 5	protein-coding	-0.061757090046517	-0.0477873454246531	0.114456242696245	0.346135556936556	-0.0608903680756014	0.428035575968691	-0.0513718135395576	0.351754977534017	0.733368643423477	0.736291278687607	1
Merged-chr5-36730895-4	chr5	36730788	36730988	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17791.0	NM_133724	117197.0	Mm.46744	NM_133724	ENSMUSG00000060708	Bloc1s4	2610101N07Rik|Blos4|Cno	biogenesis of lysosomal organelles complex-1, subunit 4, cappuccino	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126921463-2	chr8	126921363	126921563	+	898.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	24458.0	NM_024214	67952.0	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-3427844-4	chr11	3427760	3427960	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290473, intron 2 of 5)	intron (NM_001290473, intron 2 of 5)	-18622.0	NM_010718	16886.0	Mm.124176	NM_010718	ENSMUSG00000020451	Limk2	Limk-2|whe	LIM motif-containing protein kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71001294-2	chr17	71001194	71001394	+	839.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026064, intron 1 of 3)	intron (NM_026064, intron 1 of 3)	1239.0	NM_026064	67268.0	Mm.489605	NM_026064	ENSMUSG00000024048	Myl12a	2900073G15Rik|AI838292|C80200	myosin, light chain 12A, regulatory, non-sarcomeric	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-88288464-2	chr1	88288364	88288564	+	556.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-10885.0	NM_198652	381280.0	Mm.384762	NM_198652	ENSMUSG00000044783	Hjurp	6430706D22Rik|A730008H23Rik|C330011F01Rik|Gm975|Mfleg1	Holliday junction recognition protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-29403151-4	chr19	29403061	29403261	+	815.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7758.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-103374268-4	chr3	103374168	103374368	+	812.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	94975.0	NM_053170	94093.0	Mm.195036	NM_053170	ENSMUSG00000033014	Trim33	8030451N04Rik|AI413936|Ecto|Tif1g	tripartite motif-containing 33	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102068877-2	chr12	102068777	102068977	+	907.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59850.0	NM_001362345	238384.0	Mm.312448	NM_172152	ENSMUSG00000041771	Slc24a4	A930002M03Rik|AW492432|NCKX4	solute carrier family 24 (sodium/potassium/calcium exchanger), member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-79020614-6	chr17	79020484	79020684	+	866.544434	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001171004, intron 1 of 18)	CpG	232.0	NM_001171004	75292.0	Mm.252776	NM_029239	ENSMUSG00000024070	Prkd3	4930557O20Rik|5730497N19Rik|PKD3|Pkcnu|Prkcn	protein kinase D3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-3499422-3	chr2	3499335	3499535	+	681.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015765, intron 6 of 13)	intron (NM_015765, intron 6 of 13)	13379.0	NR_103465	50497.0	Mm.89341	NM_015765	ENSMUSG00000051396	Hspa14	70kDa|HSP70L1|Hsp70-4|NST-1|hsr.1	heat shock protein 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-79630434-4	chr12	79630338	79630538	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	294295.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-104232167-4	chr9	104232050	104232250	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359740, intron 6 of 56)	intron (NM_001359740, intron 6 of 56)	30780.0	NM_001359740	235567.0	Mm.217256	NM_001163026	ENSMUSG00000032560	Dnajc13	D030002L11Rik|Gm1124|RME-8|Rme8|mKIAA0678	DnaJ heat shock protein family (Hsp40) member C13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-82869478-2	chr7	82869378	82869578	+	623.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_175366, exon 2 of 2)	exon (NM_175366, exon 2 of 2)	2145.0	NM_175366	108797.0	Mm.306789	NM_175366	ENSMUSG00000057706	Mex3b	4931439A04Rik|M-04814|Rkhd3|mKIAA2009	mex3 RNA binding family member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-47259546-2	chr13	47259446	47259646	+	557.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	65543.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-37884969-2	chr18	37884869	37885069	+	972.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007858, intron 16 of 26)	intron (NM_007858, intron 16 of 26)	-30309.0	NR_105945	102465592.0		NR_105945	ENSMUSG00000098706	Mir6979	Gm27524|mmu-mir-6979	microRNA 6979	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-72464521-4	chr2	72464443	72464643	+	899.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16C|LTR|ERVK	-11676.0	NM_025866	66953.0	Mm.270676	NM_025866	ENSMUSG00000055612	Cdca7	2310021G01Rik|AU044109|JPO1	cell division cycle associated 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-101075462-4	chr9	101075373	101075573	+	999.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001100451, intron 1 of 1)	CpG	711.0	NM_001100451	77853.0	Mm.326206	NM_001100451	ENSMUSG00000066415	Msl2	E130103E02Rik|Msl2l1|Rnf184	MSL complex subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-31201320-4	chr16	31201228	31201428	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030138)	promoter-TSS (NM_030138)	-90.0	NM_030138	78618.0	Mm.274646	NM_030138	ENSMUSG00000049076	Acap2	4832442G16|9530039J15Rik|CNT-B2|Centb2|mKIAA0041	ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-75445939-4	chr1	75445825	75446025	+	887.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4585.0	NM_183022	241118.0	Mm.110790	NM_183022	ENSMUSG00000033007	Asic4	Accn4|BNAC4	acid-sensing (proton-gated) ion channel family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-92578410-2	chr13	92578310	92578510	+	581.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2178.0	NM_030237	79401.0	Mm.23520	NM_030237	ENSMUSG00000046957	Spz1	1700027M20Rik|AI429130	spermatogenic leucine zipper 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-79326716-2	chr15	79326616	79326816	+	773.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016915, intron 1 of 15)	B2_Mm2|SINE|B2	1655.0	NM_016915	53357.0	Mm.155620	NM_016915	ENSMUSG00000042632	Pla2g6	BB112799|PNPLA9|iPLA(2)beta|iPLA2|iPLA2beta	phospholipase A2, group VI	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-118144520-4	chr4	118144414	118144614	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161823, intron 16 of 21)	intron (NM_001161823, intron 16 of 21)	-9568.0	NM_001161774	20441.0	Mm.251002	NM_009176	ENSMUSG00000028538	St3gal3	ST3GalIII|ST3N|Siat3|Siat6	ST3 beta-galactoside alpha-2,3-sialyltransferase 3	protein-coding	4.37059754036742	4.13527826012961	4.61805005099479	4.4185303513658	4.54506636249826	3.07375399150654	3.64697891726271	2.99430259319141	-0.881655745523371	0.0794517101277222	0.429010629213507
Merged-chr4-136309939-3	chr4	136309833	136310033	+	804.694458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A1|LTR|ERVL-MaLR	-1009.0	NM_001277122	74326.0	Mm.31051	NM_028871	ENSMUSG00000066037	Hnrnpr	2610003J05Rik|2610528B01Rik|Hnrpr	heterogeneous nuclear ribonucleoprotein R	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-35208572-4	chr8	35208505	35208705	+	961.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-167136.0	NM_177741	244416.0	Mm.247126	NM_177741	ENSMUSG00000046794	Ppp1r3b	6430576E21|AW821953|GL|PTG	protein phosphatase 1, regulatory (inhibitor) subunit 3B	protein-coding	4.63649256776701	4.91351698266197	4.80524668323539	4.06514712934057	3.14948251270924	3.20122399708801	3.33107049109556	3.42523563331493	-1.86752129774581	4.79641884275585e-05	0.00167613883326363
Merged-chr1-36068235-4	chr1	36068153	36068353	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015818)	promoter-TSS (NM_015818)	-147.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65214669-2	chr9	65214569	65214769	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177460)	promoter-TSS (NM_177460)	-21.0	NM_177460	214424.0	Mm.31129	NM_177460	ENSMUSG00000032392	Parp16	ARTD15|BC055447|C79952|PARP-16	poly (ADP-ribose) polymerase family, member 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-13304237-4	chr9	13304141	13304341	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57285.0	NM_025534	66396.0	Mm.290620	NM_025534	ENSMUSG00000079084	Ccdc82	2310043N13Rik	coiled-coil domain containing 82	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-119152705-4	chr10	119152618	119152818	+	743.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	59813.0	NR_045348	73400.0	Mm.416864	NR_045348	ENSMUSG00000100681	1700064J06Rik	-	RIKEN cDNA 1700064J06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-40919696-4	chr14	40919598	40919798	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145928, intron 2 of 8)	intron (NM_145928, intron 2 of 8)	-26733.0	NM_177816	328381.0	Mm.235694	NM_177816	ENSMUSG00000037833	Sh2d4b	A430109M18Rik|D030001E08	SH2 domain containing 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-56075954-4	chr16	56075816	56076016	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360073, intron 3 of 24)	CpG	436.0	NM_001304503	66315.0	Mm.255784	NM_025483	ENSMUSG00000052917	Senp7	2410152H17Rik|2810413I22Rik|2900036C23Rik|6030449K19Rik|AI790676	SUMO1/sentrin specific peptidase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-31760519-3	chr18	31760438	31760638	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001242430)	promoter-TSS (NM_001242430)	-78.0	NM_001242430	225339.0	Mm.290804	NM_153515	ENSMUSG00000041915	Ammecr1l	5430429D03Rik|AU022236|AU040755|AW111353|E230022H04Rik	AMME chromosomal region gene 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72162779-3	chr6	72162670	72162870	+	899.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39573.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-78210999-3	chr13	78210845	78211045	+	837.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045195, intron 1 of 2)	intron (NR_045195, intron 1 of 2)	-12072.0	NM_010151	13865.0	Mm.439653	NM_010151	ENSMUSG00000069171	Nr2f1	COUP-TF1|COUP-TFI|COUPTFA|EAR-3|EAR3|Erbal3|SVP44|Tcfcoup1	nuclear receptor subfamily 2, group F, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128550711-2	chr10	128550611	128550811	+	721.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1543.0	NM_018860	67945.0	Mm.290786	NM_018860	ENSMUSG00000093674	Rpl41	1810055P16Rik|2210411K19Rik	ribosomal protein L41	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-98513045-4	chr15	98512933	98513133	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6801.0	NR_034051	100217417.0	Mm.486440	NR_034051	ENSMUSG00000065336	Snora34	MBI-89	small nucleolar RNA, H/ACA box 34	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33927792-3	chr16	33927684	33927884	+	892.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 10 of 14)	intron (NM_001145884, intron 10 of 14)	39254.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-62287631-4	chr4	62287541	62287741	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025286, intron 1 of 3)	intron (NM_025286, intron 1 of 3)	1212.0	NM_025286	20530.0	Mm.292539	NM_025286	ENSMUSG00000066152	Slc31a2	AI604396|CTR2	solute carrier family 31, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-135517079-3	chr3	135516971	135517171	+	857.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027288, intron 4 of 16)	MLT1F2|LTR|ERVL-MaLR	31460.0	NM_027288	110173.0	Mm.280536	NM_027288	ENSMUSG00000028164	Manba	2410030O07Rik|B930014J03Rik|Bmn	mannosidase, beta A, lysosomal	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-95888849-4	chr13	95888727	95888927	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027711, intron 1 of 35)	intron (NM_027711, intron 1 of 35)	3095.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	0.651908971043325	-0.0446381325908717	-0.0498812225392764	0.249741162292787	-0.0596458853579837	-0.0434563405213008	-0.0487247572914604	0.484819657189617	-0.948348587038852	0.678580370623803	1
Merged-chr15-84994635-4	chr15	84994498	84994698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-6627.0	NM_001033273	223739.0	Mm.323925	NM_001033273	ENSMUSG00000036046	5031439G07Rik	AW554572|mKIAA0930	RIKEN cDNA 5031439G07 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6361696-2	chr19	6361596	6361796	+	890.125	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-1994.0	NM_011750	22668.0	Mm.256422	NM_011750	ENSMUSG00000024949	Sf1	BBP|MZFM|WBP4|Zfp162	splicing factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-3146759-4	chr5	3146660	3146860	+	971.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-197133.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-77266135-7	chr5	77266030	77266230	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011263, intron 1 of 3)	CpG	636.0	NM_011263	19712.0	Mm.28840	NM_011263	ENSMUSG00000029249	Rest	2610008J04Rik|AA407358|NRSF|REST4	RE1-silencing transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88593434-4	chr3	88593336	88593536	+	972.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13828.0	NM_025448	66256.0	Mm.7091	NM_025448	ENSMUSG00000041355	Ssr2	1500032E05Rik|AI315033|AU020133|SSR-beta|TLAP|TRAPB|TRAPbeta	signal sequence receptor, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-75796164-4	chr13	75796002	75796202	+	800.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43783.0	NM_001360151	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	0.173759903048066	0.945546868237272	0.879464051165634	0.0152593104143819	0.00676149938764764	0.0305388001990752	0.022894603704244	0.0163019549735429	-4.24974323789474	0.0422159728561714	1
Merged-chr12-70136600-4	chr12	70136496	70136696	+	996.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17575.0	NM_001195033	100504285.0	Mm.291105	NM_001195033	ENSMUSG00000090121	Abhd12b	Gm804	abhydrolase domain containing 12B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-145340494-2	chr7	145340362	145340562	+	774.988098	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25627.0	NM_203490	211578.0	Mm.370299	NM_203490	ENSMUSG00000051207	Mrgprd	Gm499|Mgrd|MrgD|TGR7	MAS-related GPR, member D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-7591781-1	chr1	7591681	7591881	+	568.0	f1_c57bl6.idr	Intergenic	Intergenic	502861.0	NM_183028	319263.0	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	0.142239983675578	-0.00676383389524018	-0.0146385858622959	1.1917434497347	0.538035284493063	-0.0050032344578114	-0.0128925785466404	-0.0197092608097226	-1.72657636644553	0.420105924543817	1
Merged-chr2-75699513-2	chr2	75699413	75699613	+	579.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_132727, intron 1 of 1)	intron (NR_132727, intron 1 of 1)	5150.0	NR_132727	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-116530463-2	chr7	116530363	116530563	+	931.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360375, intron 11 of 14)	intron (NM_001360375, intron 11 of 14)	26094.0	NM_001360375	53322.0	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-82875411-2	chr8	82875300	82875500	+	714.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_177378, intron 1 of 6)	intron (NM_177378, intron 1 of 6)	12044.0	NM_177378	330812.0	Mm.491438	NM_177378	ENSMUSG00000047747	Rnf150	A630007N06Rik|C030044C12Rik|Greul5|mKIAA1214	ring finger protein 150	protein-coding	4.37879728032538	3.87998314869851	3.68682599601896	3.71157902369478	2.7401537238449	3.33328429601979	2.38543745813745	1.57231433388835	-2.06111064664228	0.00134779010333933	0.0248018184967259
Merged-chr17-84270311-4	chr17	84270231	84270431	+	832.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183021, intron 30 of 37)	B1_Mus1|SINE|Alu	-82384.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-83234735-4	chr4	83234662	83234862	+	946.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027238, intron 17 of 19)	intron (NM_027238, intron 17 of 19)	89427.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-31129627-2	chr3	31129527	31129727	+	756.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20293.0	NM_008770	18417.0	Mm.4425	NM_008770	ENSMUSG00000037625	Cldn11	Claudin-11|Claudin11|Osp|Otm	claudin 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-25365207-4	chr2	25365113	25365313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149315, intron 1 of 8)	CpG	450.0	NR_149315	227620.0	Mm.33797	NM_001033293	ENSMUSG00000026956	Uap1l1	5730445F03Rik	UDP-N-acteylglucosamine pyrophosphorylase 1-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-162005434-5	chr1	162005340	162005540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040562, exon 2 of 3)	non-coding (NR_040562, exon 2 of 3)	471.0	NR_040562	72753.0	Mm.452125	NR_040562	ENSMUSG00000090260	2810442N19Rik	-	RIKEN cDNA 2810442N19 gene	ncRNA	5.92225452854809	4.49459765346687	5.75187328166931	4.81934145668382	5.22851607469748	4.91543000459045	5.99567760544944	3.88501837787231	-0.207593449826845	0.631864894658056	0.982230082053879
Merged-chr10-85190173-3	chr10	85190061	85190261	+	842.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5107.0	NM_007771	12952.0	Mm.26237	NM_007771	ENSMUSG00000020038	Cry1	AU020726|AU021000|Phll1	cryptochrome 1 (photolyase-like)	protein-coding	3.14665516430236	2.82467247424492	1.14755083008709	2.45585896362691	1.71558173738409	2.84710949438208	1.1564778117769	1.12108570641994	-1.31144237163768	0.462089150307111	0.921194606787634
Merged-chr1-138957277-2	chr1	138957177	138957377	+	944.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6432.0	NM_001166501	329260.0	Mm.337604	NM_181347	ENSMUSG00000056268	Dennd1b	4632404N19Rik|4930467M19Rik|6820401H01Rik|F730008N07Rik	DENN/MADD domain containing 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-27229587-3	chr14	27229515	27229715	+	848.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289686, intron 3 of 12)	intron (NM_001289686, intron 3 of 12)	-8395.0	NM_027871	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91352260-4	chr16	91352126	91352326	+	919.787476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20557.0	NM_010509	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	3.30747298257333	2.79684087884707	3.73298221355248	3.48475307299782	3.82955626725961	4.01954277249354	3.61107356472945	3.71751376716726	0.639797836437931	0.219005314325402	0.710425133726433
Merged-chr2-158080053-2	chr2	158079953	158080153	+	826.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_040609, intron 3 of 3)	intron (NR_040609, intron 3 of 3)	11744.0	NR_040609	72340.0	Mm.443395	NR_040609	ENSMUSG00000100860	2010009K17Rik	-	RIKEN cDNA 2010009K17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-13021141-2	chr5	13021041	13021241	+	811.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1VL4|LINE|L1	-375643.0	NM_001243072	20346.0	Mm.372039	NM_009152	ENSMUSG00000028883	Sema3a	Hsema-I|SEMA1|SemD|Semad|coll-1	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-21077253-4	chr10	21077156	21077356	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177776, intron 6 of 6)	intron (NM_001177776, intron 6 of 6)	36436.0	NM_001177776	52906.0	Mm.253280	NM_026203	ENSMUSG00000019986	Ahi1	1700015F03Rik|Ahi-1|D10Bwg0629e	Abelson helper integration site 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-62046486-4	chr15	62046394	62046594	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132746, intron 1 of 6)	intron (NR_132746, intron 1 of 6)	7237.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-11840747-3	chr18	11840642	11840842	+	965.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_035447)	promoter-TSS (NR_035447)	-304.0	NR_035447	100316686.0		NR_035447	ENSMUSG00000084565	Mir1901	Mirn1901|mmu-mir-1901	microRNA 1901	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-3964935-4	chr11	3964833	3965033	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022889, intron 1 of 14)	intron (NM_022889, intron 1 of 14)	958.0	NM_022889	64934.0	Mm.28659	NM_022889	ENSMUSG00000020430	Pes1	-	pescadillo ribosomal biogenesis factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-34473609-2	chr1	34473509	34473709	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_011206, exon 15 of 15)	exon (NM_011206, exon 15 of 15)	13863.0	NM_011206	19253.0	Mm.361	NM_011206	ENSMUSG00000026126	Ptpn18	FLP1|HSCF|PTP-HSCF|PTP-K1|Ptpk1	protein tyrosine phosphatase, non-receptor type 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5408623-7	chr19	5408504	5408704	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027938, intron 1 of 3)	L2|LINE|L2	1789.0	NR_027938	74931.0	Mm.388511	NR_015545	ENSMUSG00000086938	4930481A15Rik	-	RIKEN cDNA 4930481A15 gene	ncRNA	2.54778293871368	3.75915757835537	4.13224643202207	2.84366231025353	3.58034113453778	3.42695022202322	4.62785234669809	2.8599205461135	0.464585168767079	0.465306590619692	0.922736970596151
Merged-chr2-22758732-4	chr2	22758652	22758852	+	805.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15575.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30630448-2	chr2	30630348	30630548	+	668.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	35404.0	NM_030137	78617.0	Mm.40413	NM_030137	ENSMUSG00000047363	Cstad	9530039B02Rik	CSA-conditional, T cell activation-dependent protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-193130749-2	chr1	193130649	193130849	+	611.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_151719)	promoter-TSS (NR_151719)	-479.0	NR_151719	215193.0	Mm.173758	NM_145415	ENSMUSG00000016181	Diexf	AA408296|AW045375|Def	digestive organ expansion factor homolog (zebrafish)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-98993224-4	chr15	98993116	98993316	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	7251.0	NR_045991	75951.0	Mm.441657	NR_045991	ENSMUSG00000097587	4930578M01Rik	3010001K12Rik	RIKEN cDNA 4930578M01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-114460057-2	chr6	114459957	114460157	+	886.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001317124, intron 1 of 1)	intron (NM_001317124, intron 1 of 1)	1535.0	NM_001317124	15465.0	Mm.333327	NM_008285	ENSMUSG00000053004	Hrh1	Bphs|H1R|HH1R|Hir	histamine receptor H1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-69709874-1	chr3	69709774	69709974	+	567.0	f0_balb.idr	Intergenic	Intergenic	-12181.0	NM_133787	97112.0	Mm.21062	NM_133787	ENSMUSG00000027787	Nmd3	C87860	NMD3 ribosome export adaptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101107253-2	chr7	101107142	101107342	+	785.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1533.0	NM_001146010	207278.0	Mm.263041	NM_199012	ENSMUSG00000030691	Fchsd2	BC034086|R74866|Sh3md3|mKIAA0769	FCH and double SH3 domains 2	protein-coding	0.707973720128574	1.34052857488236	0.956433689657022	0.931706174495689	1.30244615458986	1.92097909330222	0.742217962714703	1.49408895835723	1.73509552566274	0.213485836645439	0.703038353542171
Merged-chr16-32689681-2	chr16	32689581	32689781	+	633.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16527.0	NM_001289443	51789.0	Mm.251115	NM_016788	ENSMUSG00000022791	Tnk2	Ack|Ack-1|Ack1|Cdgip|Pyk1	tyrosine kinase, non-receptor, 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-15594458-4	chr16	15594354	15594554	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023585)	promoter-TSS (NM_023585)	64.0	NM_001159351	70620.0	Mm.235407	NM_023585	ENSMUSG00000022674	Ube2v2	1110021H13Rik|4632410D19Rik|5730524P06Rik|6820402M05|AI848315|C81524|MMS2	ubiquitin-conjugating enzyme E2 variant 2	protein-coding	4.71429058785572	5.4704413576899	5.34327544183495	4.83049100073556	4.55344013066291	5.26515560552815	5.94289704603968	5.43383752036501	0.303268994706975	0.38938100301827	0.878578793881975
Merged-chr18-84807824-4	chr18	84807729	84807929	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43509.0	NM_025797	109672.0	Mm.31018	NM_025797	ENSMUSG00000024646	Cyb5a	0610009N12Rik|Cyb5	cytochrome b5 type A (microsomal)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-41568569-4	chr4	41568487	41568687	+	931.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027993, intron 1 of 5)	intron (NM_027993, intron 1 of 5)	940.0	NM_001159583	71901.0	Mm.39215	NM_027993	ENSMUSG00000028439	Fam219a	2310028H24Rik	family with sequence similarity 219, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-15954553-3	chr16	15954457	15954657	+	696.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355731, intron 9 of 18)	intron (NM_001355731, intron 9 of 18)	67271.0	NM_007679	12609.0	Mm.347407	NM_007679	ENSMUSG00000071637	Cebpd	c/EBPdelta	CCAAT/enhancer binding protein (C/EBP), delta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-24165022-4	chr5	24164929	24165129	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346582)	promoter-TSS (NM_001346582)	66.0	NM_001346582	231042.0	Mm.45513	NM_153092	ENSMUSG00000048439	Nupl2	AV116043|CG1|NLP-1|Nlp1	nucleoporin like 2	protein-coding	3.13097318381762	3.94292146249641	2.96295102898345	4.93921622533561	3.73295962505334	3.46014489217736	2.68795424632178	3.72664246049436	-0.757381660021339	0.217966972822512	0.708842567601735
Merged-chr12-70249820-2	chr12	70249720	70249920	+	684.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110202, intron 10 of 11)	intron (NM_001110202, intron 10 of 11)	21979.0	NR_045174	414124.0	Mm.416164	NR_045174	ENSMUSG00000085298	F730035M05Rik	-	RIKEN cDNA F730035M05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-143731123-1	chr1	143731023	143731223	+	578.5	f0_balb.idr	Intergenic	B3A|SINE|B2	-8226.0	NM_001038593	69367.0	Mm.272727	NM_023505	ENSMUSG00000018196	Glrx2	1700010P22Rik|AI645710|Grx2	glutaredoxin 2 (thioltransferase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101970270-2	chr11	101970170	101970370	+	634.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_028207)	TTS (NM_028207)	-3255.0	NM_024449	74499.0	Mm.265602	NM_024449	ENSMUSG00000001494	Sost	5430411E23Rik	sclerostin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81602649-2	chr10	81602549	81602749	+	894.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1749.0	NM_001346695	114606.0	Mm.206764	NM_053254	ENSMUSG00000034758	Tle6	1810057E06Rik|Grg6	transducin-like enhancer of split 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-121569426-2	chr3	121569326	121569526	+	729.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37082.0	NM_145394	213603.0	Mm.33062	NM_145394	ENSMUSG00000039865	Slc44a3	BC010552	solute carrier family 44, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-24623402-2	chr10	24623302	24623502	+	563.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27960.0	NM_010217	14219.0	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-123921510-2	chr10	123921403	123921603	+	647.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-547571.0	NR_028310	75030.0	Mm.159403	NR_028310	ENSMUSG00000112364	4930503E24Rik	-	eukaryotic translation initiation factor 3, subunit I pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-118098891-3	chr4	118098792	118098992	+	999.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285520, intron 2 of 11)	Charlie20a|DNA|hAT-Charlie	36054.0	NM_001285520	20441.0	Mm.251002	NM_009176	ENSMUSG00000028538	St3gal3	ST3GalIII|ST3N|Siat3|Siat6	ST3 beta-galactoside alpha-2,3-sialyltransferase 3	protein-coding	0.35193189167937	0.218586613918295	0.211084234272905	0.205259293213338	0.716447522937166	1.10155402044792	0.709551041644074	0.206279275441713	3.52615785164951	0.068950067194121	1
Merged-chr18-57740342-4	chr18	57740242	57740442	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MD|LINE|L1	39653.0	NR_152224	100503033.0	Mm.381112	NR_152224		Gm19519	-	predicted gene, 19519	ncRNA	3.95220020878371	4.81466170363498	4.41810210741469	4.39332651881137	4.08295119961115	3.99449964393426	2.37701493073049	2.96122669966977	-1.20764602511489	0.0226220615351122	0.195234816785476
Merged-chr2-150918785-2	chr2	150918685	150918885	+	910.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_027014, intron 4 of 6)	intron (NM_027014, intron 4 of 6)	9191.0	NM_001163476	69270.0	Mm.271603	NM_027014	ENSMUSG00000027454	Gins1	2810418N01Rik|Gins4|PSF1|mKIAA0186	GINS complex subunit 1 (Psf1 homolog)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-53628099-3	chr11	53628005	53628205	+	897.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6597.0	NM_008355	16163.0	Mm.1284	NM_008355	ENSMUSG00000020383	Il13	Il-13	interleukin 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-82258642-2	chr15	82258542	82258742	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_037698, intron 1 of 1)	intron (NR_037698, intron 1 of 1)	2619.0	NR_037698	76505.0	Mm.23023	NR_037697	ENSMUSG00000068099	1500009C09Rik	-	RIKEN cDNA 1500009C09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-144556174-4	chr2	144556044	144556244	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019787)	promoter-TSS (NM_019787)	-85.0	NM_001252544	27054.0	Mm.248492	NM_019787	ENSMUSG00000027429	Sec23b	-	SEC23 homolog B, COPII coat complex component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-75176783-4	chr14	75176710	75176910	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008879, intron 1 of 16)	intron (NM_008879, intron 1 of 16)	40385.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81849278-2	chr15	81849226	81849426	+	831.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_020507, exon 2 of 2)	3' UTR (NM_020507, exon 2 of 2)	9000.0	NM_020507	57259.0	Mm.323595	NM_020507	ENSMUSG00000048546	Tob2	2900090N22Rik|4930545K18Rik|AV071822|mKIAA1663	transducer of ERBB2, 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-44504651-4	chr13	44504588	44504788	+	998.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR12BD_Mm|LTR|ERVK	64961.0	NR_045489	69491.0	Mm.392410	NR_045489	ENSMUSG00000098144	1700029N11Rik	-	RIKEN cDNA 1700029N11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3887471-2	chr12	3887371	3887571	+	837.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007872, intron 6 of 22)	intron (NM_007872, intron 6 of 22)	-4273.0	NM_153743	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5840649-4	chr19	5840504	5840704	+	839.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_131212, exon 1 of 1)	non-coding (NR_131212, exon 1 of 1)	4874.0	NR_131212	66961.0	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-111156610-3	chr10	111156507	111156707	+	996.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8195.0	NM_001003717	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100552261-2	chr11	100552161	100552361	+	847.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028918, intron 5 of 11)	ORR1F|LTR|ERVL-MaLR	6629.0	NM_028918	74407.0	Mm.31590	NM_028918	ENSMUSG00000006784	Ttc25	4933404O19Rik	tetratricopeptide repeat domain 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-61838128-2	chr14	61838028	61838228	+	833.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-155755.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64321763-1	chr5	64321663	64321863	+	711.0	f0_balb.idr	intron (NM_001289514, intron 13 of 18)	intron (NM_001289514, intron 13 of 18)	91406.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-71004498-4	chr11	71004366	71004566	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178367)	promoter-TSS (NM_178367)	-34.0	NM_178367	216877.0	Mm.35399	NM_178367	ENSMUSG00000040620	Dhx33	3110057P17Rik|9430096J02Rik|Ddx33	DEAH (Asp-Glu-Ala-His) box polypeptide 33	protein-coding	6.06816046358742	6.30446592263957	6.54749951698698	6.39372077057774	6.31735699219884	6.26183247784249	6.5859483492768	6.21793403201519	0.0185547520853702	0.929902444469249	0.998431161219273
Merged-chr15-99497297-4	chr15	99497249	99497449	+	823.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028224, exon 12 of 12)	3' UTR (NM_028224, exon 12 of 12)	-22619.0	NM_029236	75284.0	Mm.32826	NM_029236	ENSMUSG00000037525	Bcdin3d	4930556P03Rik|AV138748	BCDIN3 domain containing	protein-coding	0.656421485710477	0.526026433418636	1.01396059480296	0.844413913190318	0.800866936943687	1.5169445046154	0.518414220255677	0.849714626023697	1.0287650392754	0.503668992509327	1
Merged-chr4-116684983-2	chr4	116684883	116685083	+	758.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011034)	promoter-TSS (NM_011034)	-616.0	NM_011034	18477.0	Mm.30929	NM_011034	ENSMUSG00000028691	Prdx1	MSP23|NkefA|OSF-3|OSF3|PAG|Paga|PrdxI|PrxI|TDX2|TPxA|Tdpx2|prx1	peroxiredoxin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132329517-4	chr4	132329422	132329622	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027925)	promoter-TSS (NM_027925)	16.0	NM_027925	71787.0	Mm.239183	NM_027925	ENSMUSG00000028898	Trnau1ap	1110007F05Rik|AA387999|Secp43|Trspap1|WI1-2643G14.2	tRNA selenocysteine 1 associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-142096102-2	chr7	142096002	142096202	+	675.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008748)	promoter-TSS (NM_008748)	-818.0	NM_008748	18218.0	Mm.39725	NM_008748	ENSMUSG00000037887	Dusp8	5530400B01Rik|AI593498|Nttp1	dual specificity phosphatase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-19149026-2	chr5	19148926	19149126	+	836.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR1B-int|LTR|ERV1	77529.0	NR_102341	70832.0	Mm.398993	NR_102341	ENSMUSG00000097626	4921504A21Rik	-	RIKEN cDNA 4921504A21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-112502158-2	chr13	112502058	112502258	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010560, intron 15 of 16)	L1M4|LINE|L1	38088.0	NM_010560	16195.0	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-34195667-4	chr12	34195575	34195775	+	972.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271386, intron 23 of 27)	MusHAL1|LINE|L1	238004.0	NM_011658	22160.0	Mm.3280	NM_011658	ENSMUSG00000035799	Twist1	M-Twist|Pde|Ska10|Ska<m10Jus>|Twist|bHLHa38|pdt	twist basic helix-loop-helix transcription factor 1	protein-coding	2.98066282913352	3.53211487207227	3.4966082403305	3.9466904082834	3.09512055906524	3.64017335403001	3.35511379516379	2.55641163792655	-0.505510425849087	0.391485598442908	0.880790683555837
Merged-chr11-85374929-1	chr11	85374829	85375029	+	1000.0	f0_balb.idr	intron (NM_138681, intron 6 of 25)	intron (NM_138681, intron 6 of 25)	21765.0	NM_001166643	192197.0	Mm.209989	NM_138681	ENSMUSG00000059439	Bcas3	1500019F07Rik|2610028P08Rik|AU021018|BC028339|K20D4|rudhira	breast carcinoma amplified sequence 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-51587222-2	chr11	51587122	51587322	+	626.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028398, intron 3 of 12)	intron (NM_028398, intron 3 of 12)	2465.0	NM_028398	72947.0	Mm.256875	NM_028398	ENSMUSG00000020359	Phykpl	2900006B13Rik|Agxt2l2	5-phosphohydroxy-L-lysine phospholyase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-114610135-2	chr2	114610035	114610235	+	986.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_025675, intron 3 of 8)	intron (NM_025675, intron 3 of 8)	44829.0	NM_001356438	66632.0	Mm.117809	NM_025675	ENSMUSG00000057147	Dph6	5730421E18Rik|Atpbd4	diphthamine biosynthesis 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119916447-2	chr11	119916347	119916547	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085498, intron 4 of 7)	intron (NM_001085498, intron 4 of 7)	2637.0	NM_001085498	208092.0	Mm.306673	NM_001085498	ENSMUSG00000025371	Chmp6	2400004G01Rik	charged multivesicular body protein 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-104465952-3	chr14	104465832	104466032	+	627.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011143, exon 2 of 3)	exon (NM_011143, exon 2 of 3)	2067.0	NM_011143	18996.0	Mm.246550	NM_011143	ENSMUSG00000048349	Pou4f1	Brn-3|Brn-3.0|Brn3|Brn3.0|Brn3a|E130119J07Rik	POU domain, class 4, transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-136987515-4	chr5	136987413	136987613	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310747)	promoter-TSS (NM_001310747)	446.0	NM_027318	70103.0	Mm.273147	NM_027318	ENSMUSG00000059518	Znhit1	2700001K05Rik|ZNFN4A1	zinc finger, HIT domain containing 1	protein-coding	3.19777800099728	1.95452796390286	3.31511818515086	2.53874701068895	3.64639703282374	2.8615731571707	2.88277462306391	2.89753732638311	0.450127575630488	0.52400338839008	0.948197779519432
Merged-chr4-101727147-2	chr4	101727047	101727247	+	641.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146146, intron 1 of 18)	MTC|LTR|ERVL-MaLR	9740.0	NM_010704	16847.0	Mm.259282	NM_010704	ENSMUSG00000057722	Lepr	LEPROT|Leprb|Modb1|OB-RGRP|Obr|db|diabetes|obese-like|obl	leptin receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-140072498-2	chr1	140072398	140072598	+	572.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3_Mus|LINE|L1	110913.0	NM_009888	12628.0	Mm.8655	NM_009888	ENSMUSG00000026365	Cfh	Mud-1|NOM|Sas-1|Sas1	complement component factor h	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-71019450-4	chr11	71019344	71019544	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291147)	promoter-TSS (NM_001291147)	-141.0	NM_033562	116891.0	Mm.28131	NM_033562	ENSMUSG00000018442	Derl2	CGI-101|Derlin-2|F-lana|Flana	Der1-like domain family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-86117682-3	chr11	86117588	86117788	+	673.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178309, intron 14 of 19)	intron (NM_178309, intron 14 of 19)	83505.0	NM_178309	237911.0	Mm.186143	NM_178309	ENSMUSG00000034329	Brip1	3110009N10Rik|8030460J03Rik|Bach1|FACJ|Fancj|OF	BRCA1 interacting protein C-terminal helicase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-18785936-3	chr13	18785846	18786046	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172120, intron 5 of 28)	intron (NM_172120, intron 5 of 28)	68654.0	NM_172120	218035.0	Mm.27389	NM_172120	ENSMUSG00000041236	Vps41	AI317346|Vam2|mVam2	VPS41 HOPS complex subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-46298840-4	chr18	46298736	46298936	+	953.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160399, intron 2 of 9)	Lx8|LINE|L1	13092.0	NM_001160399	240261.0	Mm.329416	NM_001160399	ENSMUSG00000071855	Ccdc112	8430438M01Rik|AW108467	coiled-coil domain containing 112	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-172502783-2	chr1	172502689	172502889	+	828.791626	f1_balb.idr|f1_c57bl6.idr	intron (NM_178598, intron 1 of 4)	intron (NM_178598, intron 1 of 4)	2543.0	NM_178598	21346.0	Mm.271711	NM_178598	ENSMUSG00000026547	Tagln2	2700094C18Rik|SM22beta|Sm22B|Sm22a	transgelin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53078078-2	chr4	53077998	53078198	+	666.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_013454, exon 19 of 50)	exon (NM_013454, exon 19 of 50)	66218.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-32429507-2	chr18	32429407	32429607	+	616.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360876, intron 13 of 17)	intron (NM_001360876, intron 13 of 17)	-51223.0	NR_045403	402767.0	Mm.385109	NR_045403	ENSMUSG00000097413	A830052D11Rik	-	RIKEN cDNA A830052D11 gene	ncRNA	-2.18375600819439	-2.15556918946382	-2.16409311609999	-2.17109492323169	-2.18177734563694	-2.01960173909294	-2.16216348594872	-2.16984160310277	0.759018020146679	0.829933115115583	1
Merged-chr7-27236357-2	chr7	27236257	27236457	+	541.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133770, intron 4 of 14)	ID_B1|SINE|B4	3344.0	NM_133770	76889.0	Mm.124728	NM_133770	ENSMUSG00000003762	Coq8b	0610012P18Rik|Adck4	coenzyme Q8B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-76899527-1	chr14	76899427	76899627	+	554.0	f0_balb.idr	Intergenic	Intergenic	137090.0	NM_172488	210808.0	Mm.89278	NM_172488	ENSMUSG00000044350	Lacc1	9030625A04Rik	laccase domain containing 1	protein-coding	3.619185994123	3.37687417508561	3.3384773924157	3.24526078815962	2.59057950166373	2.50417887184815	2.04444223211365	1.47379176353038	-2.19207223290801	0.0025218971812327	0.0398477467696619
Merged-chr1-87214337-4	chr1	87214263	87214463	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001039169, exon 1 of 7)	5' UTR (NM_001039169, exon 1 of 7)	424.0	NM_001039169	26987.0	Mm.227183	NM_023314	ENSMUSG00000026254	Eif4e2	2700069E09Rik|AI036339|AV129531|D0H0S6743E|Eif4el3	eukaryotic translation initiation factor 4E member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-10038063-4	chr1	10037971	10038171	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026493)	promoter-TSS (NM_026493)	88.0	NR_102282	26754.0	Mm.402384	NM_013715	ENSMUSG00000025917	Cops5	AI303502|CSN5|Jab1|Mov34|Sgn5	COP9 signalosome subunit 5	protein-coding	0.76756750081047	1.77162362826204	3.08128481355007	1.63794535243983	1.54908861646902	0.86762731922463	0.838819349451013	1.49000651435675	-2.29385521551095	0.0704479133536401	0.399407707654592
Merged-chr3-89438855-3	chr3	89438740	89438940	+	707.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146131, intron 1 of 10)	intron (NM_146131, intron 1 of 10)	2136.0	NM_146131	229534.0	Mm.65906	NM_146131	ENSMUSG00000042613	Pbxip1	4732463H20Rik	pre B cell leukemia transcription factor interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70460619-2	chr11	70460519	70460719	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023158)	promoter-TSS (NM_023158)	-635.0	NM_023158	66102.0	Mm.425692	NM_023158	ENSMUSG00000018920	Cxcl16	0910001K24Rik|AV290116|BB024863|CXCL16v1|CXCL16v2|SR-PSOX|Zmynd15|b2b498Clo	chemokine (C-X-C motif) ligand 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111670088-2	chr12	111669988	111670188	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021273, intron 6 of 7)	intron (NM_021273, intron 6 of 7)	2250.0	NM_021273	12709.0	Mm.16831	NM_021273	ENSMUSG00000001270	Ckb	B-CK|Bck|CPK-B|Ck-3|Ck3|Ckbb	creatine kinase, brain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131658205-4	chr1	131658112	131658312	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007799, intron 1 of 9)	intron (NM_007799, intron 1 of 9)	19898.0	NM_007799	13034.0	Mm.230249	NM_007799	ENSMUSG00000004552	Ctse	A430072O03Rik|C920004C08Rik|CE|CatE	cathepsin E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-88415268-4	chr4	88415165	88415365	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025760, intron 6 of 6)	L1MA6|LINE|L1	23661.0	NM_025760	66775.0	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-9032252-2	chr12	9032152	9032352	+	630.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029321, intron 1 of 2)	Lx8|LINE|L1	2255.0	NM_029321	75516.0	Mm.37581	NM_029321	ENSMUSG00000066637	Ttc32	1700013G20Rik	tetratricopeptide repeat domain 32	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-58261156-2	chr15	58261056	58261256	+	912.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46264.0	NM_026346	67731.0	Mm.25683	NM_026346	ENSMUSG00000022358	Fbxo32	4833442G10Rik|AI430017|ATROGIN1|Gm20361|MAFbx	F-box protein 32	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100029656-2	chr7	100029539	100029739	+	817.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291320, intron 9 of 10)	intron (NM_001291320, intron 9 of 10)	19721.0	NM_001291320	69121.0	Mm.285295	NM_133709	ENSMUSG00000030732	Chrdl2	1810022C01Rik|Chl2	chordin-like 2	protein-coding	1.22149306926555	0.711134232326782	1.4581012599358	1.0415023225094	0.675067086208228	0.713906199607632	1.23019401012301	1.68473559784457	0.0855524662554309	0.95455629918398	0.998431161219273
Merged-chr4-133085437-4	chr4	133085396	133085596	+	852.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-45137.0	NM_153423	242687.0	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	0.786286774939617	2.09695742869407	1.90427587917682	0.82050960552681	0.791516717958306	2.31181363581497	2.03135489351478	0.823989859978356	0.345913487774028	0.885437595918996	0.998431161219273
Merged-chr14-79522538-4	chr14	79522437	79522637	+	910.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286411, intron 1 of 8)	intron (NM_001286411, intron 1 of 8)	6863.0	NM_001286411	13709.0	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-21188148-2	chr5	21188048	21188248	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153365, intron 1 of 26)	intron (NR_153365, intron 1 of 26)	1881.0	NM_001359877	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135885906-2	chr5	135885806	135886006	+	622.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2B|LTR|ERVL	-2013.0	NM_013560	15507.0	Mm.13849	NM_013560	ENSMUSG00000004951	Hspb1	27kDa|Hsp25	heat shock protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-104546687-3	chr2	104546584	104546784	+	858.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9974.0	NR_136919	668733.0	Mm.461873	NR_136919		Gm13884	-	SWIM type zinc finger 7 associated protein 1 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-124940232-2	chr4	124940132	124940332	+	771.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355603, intron 3 of 5)	BC1_Mm|scRNA|scRNA	3184.0	NM_001355603	194268.0	Mm.266907	NM_177573	ENSMUSG00000044730	9930104L06Rik	C1orf109	RIKEN cDNA 9930104L06 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-103532301-4	chr12	103532198	103532398	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028980)	promoter-TSS (NM_028980)	-267.0	NM_028980	74521.0	Mm.248619	NM_028980	ENSMUSG00000021209	Ppp4r4	8430415E04Rik|mKIAA1622	protein phosphatase 4, regulatory subunit 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27897945-2	chr17	27897845	27898045	+	801.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001080769, exon 21 of 21)	3' UTR (NM_001080769, exon 21 of 21)	11297.0	NM_026836	68776.0	Mm.267998	NM_026836	ENSMUSG00000024218	Taf11	1110038O14Rik|AI115401|AL024207|AW552398|PRO214|TAF2I|TAFII28	TATA-box binding protein associated factor 11	protein-coding	-0.662826441749988	-1.00555184936033	-1.01675512286785	-1.01992432642343	-0.654846858003193	-1.00312405325568	-1.01421894731451	-1.01959449741028	0.0418081237259606	0.989738874530268	1
Merged-chr4-89275194-2	chr4	89275094	89275294	+	800.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001040654, intron 2 of 2)	intron (NM_001040654, intron 2 of 2)	6998.0	NM_001040654	12578.0	Mm.4733	NM_009877	ENSMUSG00000044303	Cdkn2a	ARF-INK4a|Arf|INK4a-ARF|Ink4a/Arf|MTS1|Pctr1|p16|p16(INK4a)|p16INK4a|p19<ARF>|p19ARF	cyclin dependent kinase inhibitor 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-85376545-4	chr13	85376393	85376593	+	972.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-87007.0	NM_145452	218397.0	Mm.259653	NM_145452	ENSMUSG00000021549	Rasa1	Gap|RasGAP|Rasa	RAS p21 protein activator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-89243907-3	chr7	89243821	89244021	+	941.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001360745, exon 4 of 14)	exon (NM_001360745, exon 4 of 14)	94866.0	NM_028343	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-116630562-2	chr6	116630462	116630662	+	589.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1563.0	NM_026057	67255.0	Mm.18810	NM_026057	ENSMUSG00000059878	Zfp422	2900028O21Rik|AU041373|KOX15|Krox-25-2|Krox-26|Krox25|Krox26|Znf22	zinc finger protein 422	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-126478307-3	chr2	126478206	126478406	+	945.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359975, intron 3 of 27)	intron (NM_001359975, intron 3 of 27)	13247.0	NM_001080944	241633.0	Mm.222235	NM_001080944	ENSMUSG00000060131	Atp8b4	Im	ATPase, class I, type 8B, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5923051-2	chr19	5922951	5923151	+	571.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026772, intron 1 of 1)	intron (NM_026772, intron 1 of 1)	1765.0	NM_026772	104252.0	Mm.491103	NM_026772	ENSMUSG00000045664	Cdc42ep2	1110008C05Rik|Borg1|Cep2|D19Bwg1013e	CDC42 effector protein (Rho GTPase binding) 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-132713674-4	chr7	132713622	132713822	+	969.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_175268, exon 5 of 5)	3' UTR (NM_175268, exon 5 of 5)	63194.0	NM_001347630	77938.0	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-63098830-4	chr11	63098716	63098916	+	948.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30166.0	NM_001302258	18858.0	Mm.1237	NM_008885	ENSMUSG00000018217	Pmp22	22kDa|Gas-3|HNPP|TRE002|Tr|trembler	peripheral myelin protein 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-12991041-2	chr10	12990941	12991141	+	878.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17409.0	NM_175102	66125.0	Mm.29743	NM_175102	ENSMUSG00000078348	Sf3b5	10kDa|1110005L13Rik|AU043053|Sf3b10	splicing factor 3b, subunit 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-50308437-2	chr6	50308337	50308537	+	800.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027881, intron 17 of 21)	intron (NM_027881, intron 17 of 21)	-46668.0	NM_018769	54722.0	Mm.248361	NM_018769	ENSMUSG00000029821	Gsdme	2310037D07Rik|4932441K13Rik|Dfna5|Dfna5h|EG14210|Fin15	gasdermin E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-155736161-3	chr4	155736041	155736241	+	882.3777470000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001101506, intron 2 of 3)	intron (NM_001101506, intron 2 of 3)	1337.0	NM_001101506	381582.0	Mm.379515	NM_001101506	ENSMUSG00000084845	Tmem240	EG381582|Gm5151	transmembrane protein 240	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83472447-1	chr11	83472347	83472547	+	708.0	f0_balb.idr	promoter-TSS (NM_027427)	promoter-TSS (NM_027427)	-661.0	NM_027427	70439.0	Mm.181050	NM_027427	ENSMUSG00000020680	Taf15	2610111C21Rik|68kDa|TAFII68|Taf2n	TATA-box binding protein associated factor 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-106483492-4	chr3	106483393	106483593	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033207, intron 1 of 1)	intron (NR_033207, intron 1 of 1)	1043.0	NM_001278941	72121.0	Mm.14816	NM_028110	ENSMUSG00000027901	Dennd2d	2010308M01Rik|AI451421	DENN/MADD domain containing 2D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-59978296-2	chr2	59978196	59978396	+	875.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001182, intron 5 of 35)	intron (NM_001001182, intron 5 of 35)	-95690.0	NM_028118	72137.0	Mm.288734	NM_028118	ENSMUSG00000026988	Wdsub1	1700048E19Rik|2610014F08Rik	WD repeat, SAM and U-box domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-41714424-3	chr4	41714311	41714511	+	852.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027278)	promoter-TSS (NM_027278)	-894.0	NM_027278	69961.0	Mm.425182	NM_027278	ENSMUSG00000036114	Rpp25l	2810432D09Rik|AW987258|Rppl25	ribonuclease P/MRP 25 subunit-like	protein-coding	-1.50561175621786	-1.47331375025452	-1.02203377115094	-1.49110398925286	-1.50334449591826	-1.47119716082604	-1.48086985756939	-1.48966786617048	-2.07776723614574	0.550394407909386	1
Merged-chr11-59202466-4	chr11	59202368	59202568	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_037964)	promoter-TSS (NR_037964)	-18.0	NM_001302335	67212.0	Mm.282694	NM_026035	ENSMUSG00000036860	Mrpl55	2810038N09Rik|L55mt|MRP-L55	mitochondrial ribosomal protein L55	protein-coding	5.72265308870388	5.42592589981024	5.26762600997366	5.07103438869016	5.44552472334196	4.99346029761822	5.09122371252861	5.62480626231425	-0.0886676837220865	0.766775462600787	0.998431161219273
Merged-chr4-117495256-2	chr4	117495156	117495356	+	610.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_025739, intron 1 of 14)	CpG	1796.0	NM_025739	66743.0	Mm.318331	NM_025739	ENSMUSG00000028677	Rnf220	4732477A13|4931406I20Rik|5730503K05Rik|AV302541	ring finger protein 220	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-78103298-2	chr13	78103198	78103398	+	613.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163420, intron 8 of 8)	intron (NM_001163420, intron 8 of 8)	78396.0	NM_029315	75507.0	Mm.443255	NM_029315	ENSMUSG00000093668	Pou5f2	1700013G10Rik|SPRM-1|Sprm1	POU domain class 5, transcription factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-15986797-2	chr7	15986697	15986897	+	614.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081418, intron 6 of 13)	intron (NM_001081418, intron 6 of 13)	12698.0	NM_001081418	243842.0	Mm.440249	NM_001081418	ENSMUSG00000070808	Bicra	Gltscr1	BRD4 interacting chromatin remodeling complex associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-87661301-4	chr16	87661203	87661403	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37651.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-34084190-2	chr4	34084090	34084290	+	856.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Rod|LINE|L1	-34123.0	NM_026293	67652.0	Mm.55848	NM_026293	ENSMUSG00000028264	Spaca1	1700124L11Rik|4930540L03Rik	sperm acrosome associated 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-37226707-3	chr10	37226613	37226813	+	702.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D11|SINE|Alu	-87787.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-134067275-3	chr1	134067159	134067359	+	744.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11896.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-74284316-3	chr1	74284217	74284417	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025580)	promoter-TSS (NM_025580)	421.0	NM_001190444	227290.0	Mm.379371	NM_146110	ENSMUSG00000006299	Aamp	AU040907|Aamp-rs	angio-associated migratory protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-44009068-4	chr19	44008987	44009187	+	987.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167905, intron 7 of 7)	intron (NM_001167905, intron 7 of 7)	20160.0	NM_001001446	226143.0	Mm.329866	NM_001001446	ENSMUSG00000025197	Cyp2c23	AW107714|BC034834|Cyp2c44|b2b386Clo	cytochrome P450, family 2, subfamily c, polypeptide 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-60686140-2	chr13	60686046	60686246	+	794.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	83935.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	-1.21575676353841	-1.1882771616738	-1.1995328574972	-1.2087786211754	-1.21524488394202	-1.18583800543462	-1.19698481468061	-0.540595393272118	2.74438217975722	0.425994238664144	1
Merged-chr3-116120985-1	chr3	116120885	116121085	+	635.0	f1_c57bl6.idr	exon (NM_011693, exon 5 of 9)	exon (NM_011693, exon 5 of 9)	8703.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-11658999-4	chr11	11658909	11659109	+	887.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26916.0	NM_009578	22778.0	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-124118679-4	chr9	124118598	124118798	+	858.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2845.0	NM_009917	12774.0	Mm.14302	NM_009917	ENSMUSG00000079227	Ccr5	AM4-7|CD195|Cmkbr5	chemokine (C-C motif) receptor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-58423909-4	chr15	58423801	58424001	+	937.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145959, intron 4 of 23)	intron (NM_145959, intron 4 of 23)	8433.0	NM_145959	210998.0	Mm.3224	NM_145959	ENSMUSG00000037119	Fam91a1	AV220772|BC033609|D15Ertd621e|SKIN|mKIAA0493	family with sequence similarity 91, member A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-25476137-3	chr17	25476048	25476248	+	887.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027951, intron 5 of 5)	intron (NM_027951, intron 5 of 5)	4558.0	NM_027951	71840.0	Mm.282330	NM_027951	ENSMUSG00000024175	Tekt4	1700010L19Rik	tektin 4	protein-coding	0.11696527513358	0.542670085134203	0.133798655531251	0.127518586871471	0.118545623936532	0.840569063958039	0.135583754467377	1.11042339635737	2.59066302839071	0.221588317470327	1
Merged-chr10-61980636-3	chr10	61980526	61980726	+	591.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1518.0	NM_007731	12817.0	Mm.300931	NM_007731	ENSMUSG00000058806	Col13a1	-	collagen, type XIII, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-5886383-3	chr11	5886261	5886461	+	762.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8105.0	NM_008894	18972.0	Mm.35788	NM_008894	ENSMUSG00000020471	Pold2	50kDa|p50|po1D2	polymerase (DNA directed), delta 2, regulatory subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-83089130-3	chr8	83088961	83089161	+	896.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177378, exon 7 of 7)	3' UTR (NM_177378, exon 7 of 7)	-76291.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-109530125-3	chr12	109530023	109530223	+	876.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10873.0	NR_027652	17263.0	Mm.289645	NM_144513	ENSMUSG00000021268	Meg3	2900016C05Rik|3110050O07Rik|6330408G06Rik|AI425946|AW108224|D12Bwg1266e|Gtl2|R74756|R75394	maternally expressed 3	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-103370595-4	chr15	103370462	103370662	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3771.0	NM_001314041	16402.0	Mm.16234	NM_010577	ENSMUSG00000000555	Itga5	Cd49e|Fnra|VLA5	integrin alpha 5 (fibronectin receptor alpha)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94943809-4	chr10	94943756	94943956	+	844.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_018797, exon 1 of 31)	exon (NM_018797, exon 1 of 31)	722.0	NM_018797	54712.0	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-5098921-2	chr18	5098821	5099021	+	837.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_153153, exon 25 of 35)	exon (NM_153153, exon 25 of 35)	52332.0	NM_001347449	225115.0	Mm.136791	NM_153153	ENSMUSG00000024236	Svil	AU024053|B430302E16Rik	supervillin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-112140002-4	chr10	112139910	112140110	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23611.0	NM_001310675	353025.0	Mm.194428	NM_178278	ENSMUSG00000035694	Caps2	D630005B03Rik	calcyphosphine 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-92907436-4	chr1	92907341	92907541	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_138577)	TTS (NR_138577)	452.0	NM_175118	67446.0	Mm.46179	NM_175118	ENSMUSG00000047067	Dusp28	0710001B24Rik|AV005521	dual specificity phosphatase 28	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117832866-3	chr10	117832784	117832984	+	696.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024457, intron 1 of 7)	GA-rich|Low_complexity|Low_complexity	13090.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-145211431-4	chr4	145211292	145211492	+	934.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011610)	TTS (NM_011610)	-16387.0	NM_001276465	230895.0	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91456057-4	chr2	91455962	91456162	+	929.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1469.0	NM_172668	228357.0	Mm.275149	NM_172668	ENSMUSG00000027253	Lrp4	6430526J12Rik|D230026E03|Megf7|mdig	low density lipoprotein receptor-related protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55931433-2	chr19	55931333	55931533	+	920.625	f1_balb.idr|f1_c57bl6.idr	intron (NR_138565, intron 15 of 15)	intron (NR_138565, intron 15 of 15)	36112.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56470543-2	chr17	56470443	56470643	+	669.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252455, intron 1 of 27)	intron (NM_001252455, intron 1 of 27)	5937.0	NM_001252455	19280.0	Mm.258771	NM_011218	ENSMUSG00000013236	Ptprs	AL022616|PTP|PTP-NU3|PTPNU-3|PTPsigma|Ptpt9|R-PTP-S|RPTPsigma	protein tyrosine phosphatase, receptor type, S	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99704476-2	chr15	99704376	99704576	+	587.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_031842, intron 5 of 12)	intron (NM_031842, intron 5 of 12)	2189.0	NM_031842	83797.0	Mm.273756	NM_031842	ENSMUSG00000023018	Smarcd1	AA407987|Baf60a|D15Kz1	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-142095119-2	chr4	142095019	142095219	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10815.0	NM_145402	214359.0	Mm.27587	NM_145402	ENSMUSG00000040616	Tmem51	BC003277	transmembrane protein 51	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-98817205-3	chr14	98817101	98817301	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	228935.0	NM_175245	76789.0	Mm.38912	NM_175245	ENSMUSG00000033186	Mzt1	2410129H14Rik|AI120158|Mozart1	mitotic spindle organizing protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165955013-4	chr2	165954910	165955110	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37627.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	3.92197363785372	3.60858955521774	4.11878699160578	4.00676267025251	4.78468026200967	4.57090524464502	4.48170853482835	3.96277909421488	0.737690090177277	0.081136300920466	0.435363747067867
Merged-chr5-142927565-2	chr5	142927465	142927665	+	795.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20811.0	NM_007393	11461.0	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-60804947-1	chr8	60804847	60805047	+	871.0	f0_balb.idr	Intergenic	Intergenic	-85446.0	NM_028299	72612.0	Mm.25263	NM_028299	ENSMUSG00000038005	Hpf1	2700029M09Rik|C230006B22Rik|C4orf27	histone PARylation factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-170128866-2	chr2	170128766	170128966	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159683, intron 2 of 6)	intron (NM_001159683, intron 2 of 6)	2354.0	NM_001033299	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-5969052-2	chr9	5968952	5969152	+	589.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F|LINE|L1	-199434.0	NM_001357398	71785.0	Mm.390122	NM_027924	ENSMUSG00000032006	Pdgfd	1110003I09Rik	platelet-derived growth factor, D polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-119868340-3	chr7	119868268	119868468	+	704.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163703, intron 1 of 2)	intron (NM_001163703, intron 1 of 2)	27090.0	NM_173408	233805.0	Mm.31539	NM_173408	ENSMUSG00000048787	Dcun1d3	1700020A13Rik|BC030335	DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4071608-2	chr19	4071508	4071708	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C|LTR|ERVK	-10880.0	NM_001160253	29866.0	Mm.46268	NM_013878	ENSMUSG00000024857	Cabp2	-	calcium binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70720835-4	chr8	70720683	70720883	+	966.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195253, intron 2 of 3)	RLTR25B|LTR|ERVK	2240.0	NM_001195253	100502950.0	Mm.52981	NM_001195253	ENSMUSG00000095026	Gm3336	100041434|2410018E23Rik	predicted gene 3336	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-62244442-3	chr9	62244340	62244540	+	814.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040769)	promoter-TSS (NR_040769)	-340.0	NR_040769	330958.0	Mm.411888	NR_040769	ENSMUSG00000111232	A730043L09Rik	A730043L09	RIKEN cDNA A730043L09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-96875750-4	chr11	96875658	96875858	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25365.0	NR_029562	387170.0		NR_029562	ENSMUSG00000065515	Mir152	Mirn152|mir-152|mmu-mir-152	microRNA 152	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-38981522-4	chr6	38981415	38981615	+	980.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 3 of 12)	intron (NM_011539, intron 3 of 12)	62529.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126370154-2	chr7	126370054	126370254	+	919.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010689)	promoter-TSS (NM_010689)	-586.0	NM_010689	16797.0	Mm.10280	NM_010689	ENSMUSG00000030742	Lat	p36-38|pp36	linker for activation of T cells	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-86908473-4	chr11	86908386	86908586	+	846.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur2|LINE|L1	85276.0	NM_001005341	77864.0	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-133543267-4	chr3	133543163	133543363	+	932.31665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040400, intron 1 of 10)	intron (NM_001040400, intron 1 of 10)	1127.0	NM_001040400	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-99238600-2	chr5	99238500	99238700	+	823.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145839, intron 4 of 13)	intron (NM_145839, intron 4 of 13)	14327.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-31954443-2	chr16	31954343	31954543	+	705.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026554, intron 2 of 3)	PB1D9|SINE|Alu	5897.0	NM_026554	68092.0	Mm.290027	NM_026554	ENSMUSG00000022774	Ncbp2	20kDa|5930413E18Rik|AA536802|AI843301|C79367	nuclear cap binding protein subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-59661587-2	chr9	59661487	59661687	+	719.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253883, intron 1 of 10)	intron (NM_001253883, intron 1 of 10)	5219.0	NM_011099	18746.0	Mm.326167	NM_011099	ENSMUSG00000032294	Pkm	AA414905|AL024370|AL024424|Pk-2|Pk-3|Pk3|Pkm2	pyruvate kinase, muscle	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-108690240-2	chr3	108690140	108690340	+	756.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_029522, intron 10 of 14)	intron (NM_029522, intron 10 of 14)	32059.0	NM_029522	76123.0	Mm.226941	NM_029522	ENSMUSG00000027883	Gpsm2	6230410J09Rik|LGN|Pins	G-protein signalling modulator 2 (AGS3-like, C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171347039-2	chr1	171346939	171347139	+	736.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_011070, intron 1 of 3)	intron (NM_011070, intron 1 of 3)	1364.0	NM_011070	18637.0	Mm.10756	NM_011070	ENSMUSG00000006412	Pfdn2	ESTM27|W48336	prefoldin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-165622838-2	chr1	165622738	165622938	+	581.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083897, intron 1 of 5)	B3|SINE|B2	11703.0	NM_001001880	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-90023195-4	chr7	90023099	90023299	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5960.0	NR_110365	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129063280-4	chr4	129063178	129063378	+	996.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029219, intron 1 of 8)	ID4_|SINE|ID	5007.0	NM_029219	75234.0	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-152804698-2	chr2	152804598	152804798	+	936.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_009743, intron 2 of 2)	intron (NM_009743, intron 2 of 2)	23791.0	NR_149254	12048.0	Mm.238213	NM_009743	ENSMUSG00000007659	Bcl2l1	Bcl(X)L|Bcl-XL|Bcl2l|BclX|bcl-x|bcl2-L-1	BCL2-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115550189-1	chr5	115550089	115550289	+	679.0	f1_c57bl6.idr	intron (NM_011223, intron 6 of 10)	intron (NM_011223, intron 6 of 10)	-9278.0	NM_007475	11837.0	Mm.5286	NM_007475	ENSMUSG00000067274	Rplp0	36B4|Arbp|L10E	ribosomal protein, large, P0	protein-coding	1.92572091413357	0.872677188455305	0.852630980847717	1.06398628018362	1.46953501079549	2.22390094318749	0.857109174233835	1.88679349732768	1.31520535758582	0.332213680826311	0.833345452772687
Merged-chr9-54555253-4	chr9	54555136	54555336	+	963.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019686, intron 1 of 5)	intron (NM_019686, intron 1 of 5)	4843.0	NM_019686	56506.0	Mm.42192	NM_019686	ENSMUSG00000037493	Cib2	2810434I23Rik|AI449053	calcium and integrin binding family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-58060109-2	chr11	58060009	58060209	+	733.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028451, exon 19 of 19)	3' UTR (NM_028451, exon 19 of 19)	-43861.0	NM_026949	69125.0	Mm.28910	NM_026949	ENSMUSG00000020515	Cnot8	1500015I04Rik|1810022F04Rik|AA536816|AU015770|AU043059	CCR4-NOT transcription complex, subunit 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-46099191-2	chr15	46099091	46099291	+	566.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	-225394.0	NR_045509	71120.0	Mm.158571	NR_045509	ENSMUSG00000099751	1700022A22Rik	4933413D07Rik	RIKEN cDNA 1700022A22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-13874129-4	chr6	13874028	13874228	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045995, intron 1 of 2)	intron (NR_045995, intron 1 of 2)	2559.0	NR_045995	76311.0	Mm.367129	NR_045995	ENSMUSG00000097616	1110019D14Rik	-	RIKEN cDNA 1110019D14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70529503-2	chr8	70529403	70529603	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001199631, exon 2 of 9)	exon (NM_001199631, exon 2 of 9)	1657.0	NM_001199631	14232.0	Mm.141864	NM_010223	ENSMUSG00000019428	Fkbp8	38kDa|FKBP-38|FKBP-8|FKBPR38|Fkbp38|mFKBP38	FK506 binding protein 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-80207861-1	chr17	80207761	80207961	+	678.0	f0_balb.idr	promoter-TSS (NR_036615)	promoter-TSS (NR_036615)	-556.0	NM_001195485	225027.0	Mm.292016	NM_146083	ENSMUSG00000024097	Srsf7	35kDa|9430065L19Rik|9G8|NX-96|Sfrs7	serine/arginine-rich splicing factor 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-75434716-4	chr9	75434636	75434836	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6788.0	NM_001039522	235497.0	Mm.41508	NM_001006122	ENSMUSG00000042487	Leo1	Gm185	Leo1, Paf1/RNA polymerase II complex component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-53669239-2	chr2	53669139	53669339	+	751.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	416313.0	NM_023396	67874.0	Mm.27086	NM_023396	ENSMUSG00000075334	Rprm	2410012A13Rik|Reprimo	reprimo, TP53 dependent G2 arrest mediator candidate	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-74231435-3	chr4	74231334	74231534	+	685.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11063.0	NM_001172095	76804.0	Mm.209059	NM_144787	ENSMUSG00000028397	Kdm4c	2410141F18Rik|AA517467|Gasc1|Jmjd2c	lysine (K)-specific demethylase 4C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120580356-4	chr11	120580258	120580458	+	973.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_133796, exon 2 of 6)	exon (NM_133796, exon 2 of 6)	1262.0	NM_133796	192662.0	Mm.30016	NM_133796	ENSMUSG00000025132	Arhgdia	5330430M07Rik|Gdi-1|Rho-GDI|RhoDGI|RhoGDI-1	Rho GDP dissociation inhibitor (GDI) alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-118101394-3	chr14	118101293	118101493	+	722.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6-int|LTR|ERVK	31372.0	NM_029578	76355.0	Mm.251537	NM_029578	ENSMUSG00000022130	Tgds	2610017J16Rik|2610025M23Rik|AI648925	TDP-glucose 4,6-dehydratase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-136580412-2	chr1	136580312	136580512	+	597.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44489.0	NM_177643	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-44401959-4	chr11	44401870	44402070	+	879.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303244, intron 1 of 7)	intron (NM_001303244, intron 1 of 7)	1907.0	NM_001303244	16160.0	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-16571142-4	chr1	16571028	16571228	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_073122, exon 5 of 5)	non-coding (NR_073122, exon 5 of 5)	48210.0	NM_025773	66799.0	Mm.122430	NM_025773	ENSMUSG00000025939	Ube2w	6130401J04Rik	ubiquitin-conjugating enzyme E2W (putative)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-41157251-12	chr9	41156898	41157098	+	924.3784789999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176860, intron 1 of 13)	CpG	1064.0	NM_176860	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-131096258-1	chr2	131096158	131096358	+	656.0	f1_balb.idr	Intergenic	B1F2|SINE|Alu	-9493.0	NM_011426	20612.0	Mm.1374	NM_011426	ENSMUSG00000027322	Siglec1	Cd169|Siglec-1|Sn	sialic acid binding Ig-like lectin 1, sialoadhesin	protein-coding	0.176587728511811	0.19927504085732	0.679633650735598	0.186168204008763	0.337513782832567	0.200931555694169	1.1061813352259	0.650045360036789	1.86450990715867	0.341438411307706	1
Merged-chr6-52012610-4	chr6	52012506	52012706	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018773)	promoter-TSS (NM_018773)	-57.0	NM_018773	54353.0	Mm.221479	NM_018773	ENSMUSG00000059182	Skap2	2610021A10Rik|AA960083|BB137539|RA70|SKAP-HOM|Saps|Scap2|mSKAP55R	src family associated phosphoprotein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-9815965-4	chr1	9815878	9816078	+	891.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177547, intron 1 of 16)	intron (NM_177547, intron 1 of 16)	17848.0	NM_177547	170755.0	Mm.336410	NM_133220	ENSMUSG00000025915	Sgk3	2510015P22Rik|A330005P07Rik|Cisk|fy|fz	serum/glucocorticoid regulated kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-30574744-3	chr17	30574639	30574839	+	992.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172618, intron 1 of 11)	intron (NM_172618, intron 1 of 11)	1548.0	NM_172618	224671.0	Mm.41220	NM_027060	ENSMUSG00000062202	Btbd9	1700023F20Rik|4930402L05|AI464421	BTB (POZ) domain containing 9	protein-coding	3.48582931274735	3.01758947819439	3.56286539181234	1.85560750256217	1.27895866843793	2.21856022116031	3.19580071704535	1.86647702130522	-1.4262518438838	0.104504788695255	0.504093455413695
Merged-chr2-152143719-2	chr2	152143619	152143819	+	589.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_009328, exon 1 of 2)	exon (NM_009328, exon 1 of 2)	110.0	NM_009328	21407.0	Mm.3881	NM_009328	ENSMUSG00000068079	Tcf15	Meso1|bHLH-EC2	transcription factor 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-70233744-4	chr12	70233622	70233822	+	827.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045174, intron 4 of 4)	intron (NR_045174, intron 4 of 4)	5881.0	NR_045174	414124.0	Mm.416164	NR_045174	ENSMUSG00000085298	F730035M05Rik	-	RIKEN cDNA F730035M05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-91767965-2	chr12	91767865	91768065	+	754.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 1 of 6)	intron (NM_175367, intron 1 of 6)	18471.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-55314561-2	chr12	55314461	55314661	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025373, intron 3 of 6)	MLT1C|LTR|ERVL-MaLR	-11561.0	NM_021529	59032.0	Mm.427307	NM_021529	ENSMUSG00000021022	Ppp2r3c	4930511A21Rik|5730412A08Rik|G4-1|G5pr	protein phosphatase 2, regulatory subunit B'', gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-9712319-3	chr18	9712233	9712433	+	696.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130449, intron 1 of 9)	intron (NM_130449, intron 1 of 9)	4685.0	NM_130449	140792.0	Mm.218571	NM_130449	ENSMUSG00000036103	Colec12	CL-P1|SRCL|Scara4	collectin sub-family member 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28148737-2	chr7	28148637	28148837	+	816.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164655, intron 9 of 19)	intron (NM_001164655, intron 9 of 19)	19271.0	NM_001164655	319482.0	Mm.483194	NM_176924	ENSMUSG00000078776	9530053A07Rik	FCGBP	RIKEN cDNA 9530053A07 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-18925119-4	chr11	18925012	18925212	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010789, intron 8 of 11)	intron (NM_010789, intron 8 of 11)	93857.0	NM_001193271	17268.0	Mm.356578	NM_010789	ENSMUSG00000020160	Meis1	C530044H18Rik|Evi8	Meis homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-71261836-3	chr10	71261723	71261923	+	935.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145420, intron 3 of 6)	intron (NM_145420, intron 3 of 6)	23439.0	NM_145420	216080.0	Mm.270530	NM_145420	ENSMUSG00000019927	Ube2d1	UBCH5	ubiquitin-conjugating enzyme E2D 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-4605911-2	chr2	4605811	4606011	+	881.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177844, intron 10 of 11)	intron (NM_001177844, intron 10 of 11)	46157.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-9791250-2	chr3	9791150	9791350	+	660.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001195031, intron 1 of 8)	L1_Mur3|LINE|L1	42429.0	NM_053182	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31388889-1	chr14	31388789	31388989	+	552.0	f1_c57bl6.idr	intron (NM_001347585, intron 2 of 7)	B4A|SINE|B4	28788.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-94543599-1	chr11	94543499	94543699	+	540.0	f1_c57bl6.idr	exon (NM_001013381, exon 6 of 9)	exon (NM_001013381, exon 6 of 9)	5608.0	NM_001013381	237926.0	Mm.342275	NM_001013381	ENSMUSG00000039096	Rsad1	B430319G23|BC056485	radical S-adenosyl methionine domain containing 1	protein-coding	-0.513872335408565	-0.123156983448887	-0.504770123722976	0.33172694507923	-0.513024570642437	-0.499365884239185	-0.503795779471435	-0.507587171820639	-3.60099096701896	0.176000172343876	1
Merged-chr7-98084852-4	chr7	98084745	98084945	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008663, intron 16 of 48)	intron (NM_008663, intron 16 of 48)	24403.0	NM_001256082	17921.0	Mm.1403	NM_008663	ENSMUSG00000030761	Myo7a	Hdb|Myo7|USH1B|nmf371|polka|sh-1|sh1	myosin VIIA	protein-coding	1.18131898601753	1.3597761002968	1.95707890606685	0.696243780550908	0.879587565549408	0.731178880860429	1.97620772484383	0.698669683824211	-0.547719546763623	0.707145288293055	0.998431161219273
Merged-chr13-95375236-4	chr13	95375048	95375248	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_025630, exon 1 of 14)	5' UTR (NM_025630, exon 1 of 14)	209.0	NM_025630	66549.0	Mm.36785	NM_025630	ENSMUSG00000021681	Aggf1	2010009L17Rik|2310029P06Rik|AW112072|Peg3|VG5Q	angiogenic factor with G patch and FHA domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-95291763-3	chr10	95291659	95291859	+	690.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001330138, intron 2 of 2)	B3A|SINE|B2	31950.0	NM_001330138	12905.0	Mm.473739	NM_009950	ENSMUSG00000045867	Cradd	RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-64091985-1	chr15	64091885	64092085	+	598.5	f0_balb.idr	intron (NM_001276461, intron 28 of 28)	intron (NM_001276461, intron 28 of 28)	-31537.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-46121265-2	chr9	46121165	46121365	+	879.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_027498, intron 1 of 24)	intron (NM_027498, intron 1 of 24)	-107365.0	NM_009692	11806.0	Mm.26743	NM_009692	ENSMUSG00000032083	Apoa1	Alp-1|Apoa-1|Brp-14|Ltw-1|Lvtw-1|Sep-1|Sep-2|Sep2|apo-AI|apoA-I	apolipoprotein A-I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97830110-4	chr11	97830034	97830234	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010688, intron 4 of 6)	intron (NM_010688, intron 4 of 6)	-10646.0	NM_001080935	68127.0	Mm.110270	NM_001080935	ENSMUSG00000050538	B230217C12Rik	AI840637	RIKEN cDNA B230217C12 gene	protein-coding	4.20206291091807	4.05885897908202	4.33556147312345	4.6743934918625	3.43674850429422	3.57818411529405	3.64508046164333	3.69386626438025	-1.04331141167013	0.019705098648344	0.177888968963831
Merged-chr2-156472849-2	chr2	156472749	156472949	+	769.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291120, intron 2 of 22)	intron (NM_001291120, intron 2 of 22)	-2685.0	NM_001006664	13821.0	Mm.20852	NM_013510	ENSMUSG00000027624	Epb41l1	4.1N|Epb4.1l1|NBL1|mKIAA0338	erythrocyte membrane protein band 4.1 like 1	protein-coding	2.53808709925739	3.03703866126159	3.1476837035769	2.11266846544233	1.86478401982301	2.88448543017552	1.61302107265806	1.29770831295388	-1.45795451412603	0.11104748286183	0.52126279318319
Merged-chr14-76179588-4	chr14	76179501	76179701	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	68710.0	NM_013745	27275.0	Mm.21138	NM_013745	ENSMUSG00000022009	Nufip1	Nufip	nuclear fragile X mental retardation protein interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-9347869-4	chr11	9347828	9348028	+	765.008301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178259, intron 28 of 61)	MIRb|SINE|MIR	155986.0	NM_178259	268379.0	Mm.39270	NM_178259	ENSMUSG00000004668	Abca13	9830132L24|A930002G16Rik|AI956815	ATP-binding cassette, sub-family A (ABC1), member 13	protein-coding	2.1854760609936	2.046436799719	1.98383515934361	2.56704013874673	1.98708899213885	2.20938945121332	2.37872323967678	2.19998534584378	-0.0573973391289484	0.946365332996916	0.998431161219273
Merged-chr11-118110852-2	chr11	118110752	118110952	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001167746, intron 16 of 80)	intron (NM_001167746, intron 16 of 80)	18367.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-67016706-1	chr6	67016606	67016806	+	551.0	f0_balb.idr	intron (NM_001177558, intron 4 of 4)	intron (NM_001177558, intron 4 of 4)	-19893.0	NR_040278	320172.0	Mm.449039	NR_040278	ENSMUSG00000087231	E230016M11Rik	-	RIKEN cDNA E230016M11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-39141195-4	chr18	39141099	39141299	+	997.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361073, intron 10 of 21)	MTD|LTR|ERVL-MaLR	148054.0	NM_175164	71302.0	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding	2.64710356323589	2.20781654079899	3.24473653682415	3.37018518840596	3.16568162509785	2.59088854747079	3.34697956847199	2.90815651872383	0.144824926382074	0.831415377133635	0.998431161219273
Merged-chr12-17683478-1	chr12	17683378	17683578	+	658.5	f1_c57bl6.idr	Intergenic	L1MB7|LINE|L1	-7331.0	NM_001361645	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	2.73429138481209	3.44022752384571	3.24761763072631	2.39136605439851	2.85197976828284	2.5747091411295	3.89761307428069	2.23987353562263	0.0840836093789508	0.907266476393304	0.998431161219273
Merged-chr11-58060936-1	chr11	58060836	58061036	+	893.0	f1_balb.idr	3' UTR (NM_028451, exon 19 of 19)	3' UTR (NM_028451, exon 19 of 19)	-43034.0	NM_026949	69125.0	Mm.28910	NM_026949	ENSMUSG00000020515	Cnot8	1500015I04Rik|1810022F04Rik|AA536816|AU015770|AU043059	CCR4-NOT transcription complex, subunit 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76283303-2	chr15	76283203	76283403	+	635.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028852, intron 1 of 4)	intron (NM_028852, intron 1 of 4)	7665.0	NR_037240	100526548.0		NR_037240	ENSMUSG00000093169	Mir3079	mmu-mir-3079	microRNA 3079	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-7261663-3	chr9	7261621	7261821	+	752.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10793.0	NM_008607	17386.0	Mm.5022	NM_008607	ENSMUSG00000050578	Mmp13	Clg|MMP-13|Mmp1	matrix metallopeptidase 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128548502-3	chr10	128548426	128548626	+	869.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134003)	promoter-TSS (NM_134003)	642.0	NM_018860	67945.0	Mm.290786	NM_018860	ENSMUSG00000093674	Rpl41	1810055P16Rik|2210411K19Rik	ribosomal protein L41	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-67153122-2	chr6	67153022	67153222	+	672.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-113857.0	NM_001113566	66870.0	Mm.240490	NM_025814	ENSMUSG00000036371	Serbp1	1200009K13Rik|9330147J08Rik|AL022786|Pairbp1	serpine1 mRNA binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-75617784-4	chr16	75617671	75617871	+	691.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24880.0	NM_198302	224344.0	Mm.273214	NM_198302	ENSMUSG00000032940	Rbm11	A330018F01	RNA binding motif protein 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-142249527-2	chr4	142249427	142249627	+	599.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10126.0	NM_001109685	71529.0	Mm.255986	NM_144531	ENSMUSG00000040606	Kazn	2310007B04Rik|9030409G11Rik|AI256607|AI666764|AW061099|Kaz|Kazrin	kazrin, periplakin interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-23182203-3	chr16	23182062	23182262	+	839.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155420, intron 1 of 2)	G-rich|Low_complexity|Low_complexity	6882.0	NR_155420	105246089.0	Mm.390905	NR_155420		C730014E05Rik	-	RIKEN cDNA C730014E05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-84218893-4	chr12	84218803	84219003	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163501)	promoter-TSS (NM_001163501)	-22.0	NM_001163501	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-69363704-2	chr12	69363604	69363804	+	766.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6528.0	NM_025441	66244.0	Mm.46705	NM_025441	ENSMUSG00000020982	Nemf	1500011I12Rik|4933405E14Rik|Sdccag1	nuclear export mediator factor	protein-coding	0.242591700821683	1.21323191832762	1.14529452987933	0.255462835056949	0.2445243770983	0.858729979347551	0.265245882970458	0.256801223151123	-1.93579732603135	0.328742950469932	1
Merged-chr11-87443496-4	chr11	87443388	87443588	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199293, intron 2 of 30)	intron (NM_001199293, intron 2 of 30)	15897.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	3.30105068964695	2.94497306972483	3.34406265063135	3.8143102671849	3.03385671267933	3.3007790586767	2.58889011111917	2.89366084859149	-0.701995849999279	0.248648504099696	0.74758343357745
Merged-chr11-83882731-2	chr11	83882631	83882831	+	703.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001291269, exon 5 of 9)	exon (NM_001291269, exon 5 of 9)	29771.0	NM_001291269	21410.0	Mm.7226	NM_009330	ENSMUSG00000020679	Hnf1b	HNF-1-beta|HNF-1B|HNF-1Beta|Hnf1beta|LFB3|Tcf-2|Tcf2|vHNF1	HNF1 homeobox B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-151040569-4	chr1	151040477	151040677	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TTTTTG)n|Simple_repeat|Simple_repeat	-47142.0	NM_001024720	545370.0	Mm.379425	NM_001024720	ENSMUSG00000066842	Hmcn1	EG545370|FIBL-6|Gm201	hemicentin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5492562-4	chr17	5492464	5492664	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146073)	promoter-TSS (NM_146073)	-36.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-47450278-2	chr15	47450178	47450378	+	568.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	826973.0	NR_045811	75281.0	Mm.159487	NR_045811	ENSMUSG00000051198	4930548G14Rik	-	RIKEN cDNA 4930548G14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-84959949-2	chr15	84959849	84960049	+	877.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033273, intron 2 of 9)	intron (NM_001033273, intron 2 of 9)	-8326.0	NR_037206	100526461.0		NR_037206	ENSMUSG00000080441	Mir1249	mir-1249|mmu-mir-1249	microRNA 1249	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-122569698-2	chr6	122569598	122569798	+	750.200012	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	15889.0	NM_009645	11628.0	Mm.391503	NM_009645	ENSMUSG00000040627	Aicda	Aid|Arp2	activation-induced cytidine deaminase	protein-coding	-0.226235296896101	0.595109062818019	-0.213198233288771	-0.218068504042706	-0.225013795898844	0.608384863201147	-0.211812549537951	-0.217215065379025	0.0395006580732415	0.987233647591244	1
Merged-chr12-84767668-4	chr12	84767571	84767771	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023409, intron 1 of 3)	intron (NM_023409, intron 1 of 3)	5441.0	NM_023409	67963.0	Mm.282556	NM_023409	ENSMUSG00000021242	Npc2	2700012J19Rik|AA408070|AU045843|HE1	NPC intracellular cholesterol transporter 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-93594143-4	chr10	93594037	93594237	+	982.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045810, intron 1 of 3)	intron (NR_045810, intron 1 of 3)	-4479.0	NM_027246	69878.0	Mm.259642	NM_027246	ENSMUSG00000020018	Snrpf	2010013O18Rik|SMF|sm-F|snRNP-F	small nuclear ribonucleoprotein polypeptide F	protein-coding	6.08977290291521	4.99908167922037	6.34354912403788	5.77359927013482	3.80045660277726	4.29380689578076	5.04270197974419	3.58480204084078	-1.8696737242345	1.77761238426677e-06	0.000105932748608109
Merged-chr7-49084868-4	chr7	49084747	49084947	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111016, intron 2 of 38)	intron (NM_001111016, intron 2 of 38)	77311.0	NR_154465	108167511.0	Mm.400599	NR_154465		9130015G15Rik	-	RIKEN cDNA 9130015G15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-144899847-2	chr4	144899747	144899947	+	860.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357274, intron 2 of 6)	intron (NM_001357274, intron 2 of 6)	6710.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-106820566-1	chr1	106820466	106820666	+	542.0	f1_c57bl6.idr	Intergenic	Intergenic	-23841.0	NM_009190	20479.0	Mm.18705	NM_009190	ENSMUSG00000009907	Vps4b	8030489C12Rik|Skd1	vacuolar protein sorting 4B	protein-coding	-0.031775567518381	-0.0153578134202425	-0.0207339700018238	0.604445515159839	0.352411834016674	-0.0141461999988653	0.558652766309922	-0.0241583607403893	0.507568538410886	0.822715413093276	1
Merged-chr10-127553694-3	chr10	127553574	127553774	+	764.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 59 of 88)	intron (NM_008512, intron 59 of 88)	-19115.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-33897982-2	chr8	33897914	33898114	+	714.0	f0_c57.idr|f1_c57bl6.idr	intron (NM_001042675, intron 1 of 6)	(CA)n|Simple_repeat|Simple_repeat	31849.0	NM_019733	19663.0	Mm.323997	NM_019733	ENSMUSG00000031586	Rbpms	2010300K22Rik|2700019M19Rik|AU017537|RBP-MS|hermes	RNA binding protein gene with multiple splicing	protein-coding	1.79686653068855	1.90521507417	1.02911189265127	2.66580772788981	0.973973866400692	1.92095945617814	1.03533361365242	2.48130766243529	-0.511284943688354	0.67947364308223	0.995323723386884
Merged-chr13-113553775-4	chr13	113553677	113553877	+	863.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B2-int|LTR|ERVL-MaLR	-50933.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166451267-2	chr2	166451167	166451367	+	862.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_015558, intron 1 of 2)	intron (NR_015558, intron 1 of 2)	3816.0	NR_015558	319684.0	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150663394-2	chr4	150663294	150663494	+	915.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-11220.0	NM_173774	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-123342379-2	chr4	123342279	123342479	+	852.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_007558, intron 1 of 6)	CpG	873.0	NM_001256019	12163.0	Mm.439749	NM_007558	ENSMUSG00000032726	Bmp8a	Bmp7r1|OP-2|OP2	bone morphogenetic protein 8a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-111940335-2	chr13	111940235	111940435	+	710.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	72399.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-74377007-2	chr11	74376907	74377107	+	634.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	12336.0	NM_001011851	258153.0	Mm.376124	NM_001011851	ENSMUSG00000058275	Olfr412	MOR127-5P	olfactory receptor 412	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81086932-2	chr15	81086814	81087014	+	629.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001082536, intron 2 of 13)	intron (NM_001082536, intron 2 of 13)	18133.0	NM_153049	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	1.19986028281354	1.8145737675465	0.869256350084685	2.1434810066117	1.21022740730534	2.15344612227216	0.873808441549222	1.08595663689888	-0.48810159938917	0.706096228143934	0.998431161219273
Merged-chr17-3082375-4	chr17	3082267	3082467	+	997.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_003519, intron 1 of 7)	intron (NR_003519, intron 1 of 7)	1816.0	NR_003519	328734.0	Mm.335641	NR_003519		Pisd-ps2	D030013I16Rik	phosphatidylserine decarboxylase, pseudogene 2	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120618278-4	chr8	120618134	120618334	+	985.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001308449, intron 2 of 3)	intron (NM_001308449, intron 2 of 3)	16148.0	NM_197988	68918.0	Mm.473736	NM_197988	ENSMUSG00000043687	1190005I06Rik	-	RIKEN cDNA 1190005I06 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-90276844-2	chr9	90276784	90276984	+	902.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2B|LINE|L1	-6115.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	1.81587633475365	1.50888674418278	1.87061320220091	2.01211126243993	2.07666373210879	1.08239816643156	1.06320636887796	1.58006473510811	-0.843578108969801	0.473397508289755	0.926125823511231
Merged-chr19-43926804-2	chr19	43926704	43926904	+	655.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028029, intron 1 of 15)	intron (NM_028029, intron 1 of 15)	13394.0	NM_028029	71972.0	Mm.159024	NM_028029	ENSMUSG00000025195	Dnmbp	2410003L07Rik|2410003M15Rik|TUBA	dynamin binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-110386503-4	chr7	110386407	110386607	+	905.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177324, intron 17 of 40)	intron (NM_177324, intron 17 of 40)	164804.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101988400-3	chr15	101988292	101988492	+	914.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	15950.0	NM_031170	16691.0	Mm.358618	NM_031170	ENSMUSG00000049382	Krt8	AA960620|AL022697|AU019895|Card2|EndoA|K8|Krt-2.8|Krt2-8	keratin 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-113523144-4	chr7	113523060	113523260	+	898.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360668, intron 1 of 12)	intron (NM_001360668, intron 1 of 12)	9326.0	NM_001360669	67420.0	Mm.206919	NM_026143	ENSMUSG00000030759	Far1	2600011M19Rik|2900034E22Rik|3732409C05Rik|AI850429|Mlstd2	fatty acyl CoA reductase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81144841-2	chr10	81144741	81144941	+	549.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_010731, exon 2 of 3)	exon (NM_010731, exon 2 of 3)	8570.0	NM_010731	16969.0	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-129949589-4	chr3	129949485	129949685	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025779, intron 1 of 7)	MLT1A|LTR|ERVL-MaLR	20621.0	NM_025779	66815.0	Mm.31056	NM_025779	ENSMUSG00000027994	Mcub	9030408N13Rik|Ccdc109b	mitochondrial calcium uniporter dominant negative beta subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-13569322-2	chr19	13569222	13569422	+	547.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur1|LINE|L1	-15984.0	NM_146291	258288.0	Mm.451652	NM_146291	ENSMUSG00000096289	Olfr1484	MOR202-37	olfactory receptor 1484	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-129233038-4	chr6	129232959	129233159	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040268, intron 3 of 3)	intron (NR_040268, intron 3 of 3)	4986.0	NR_040265	76432.0	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-134062274-2	chr1	134062174	134062374	+	682.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(GA)n|Simple_repeat|Simple_repeat	16881.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-120663911-4	chr2	120663798	120663998	+	931.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54303.0	NM_001290807	66296.0	Mm.221900	NM_025475	ENSMUSG00000027285	Haus2	1700101G24Rik|2410007P03Rik|AU020217|Cep27	HAUS augmin-like complex, subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-3358953-4	chr5	3358857	3359057	+	996.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 2 of 7)	intron (NM_009873, intron 2 of 7)	15064.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-68168000-4	chr15	68167903	68168103	+	985.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152182, intron 8 of 13)	intron (NR_152182, intron 8 of 13)	90853.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-29253020-2	chr6	29252920	29253120	+	550.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur2|SINE|Alu	-19468.0	NM_001190461	69573.0	Mm.45161	NM_023516	ENSMUSG00000043421	Hilpda	2310016C08Rik|AW049004|Hig2	hypoxia inducible lipid droplet associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-145370542-3	chr2	145370436	145370636	+	914.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053195, intron 2 of 16)	intron (NM_053195, intron 2 of 16)	127925.0	NM_053195	94249.0	Mm.217171	NM_053195	ENSMUSG00000063873	Slc24a3	NCKX3	solute carrier family 24 (sodium/potassium/calcium exchanger), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101062840-1	chr7	101062740	101062940	+	571.0	f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-45935.0	NM_001146010	207278.0	Mm.263041	NM_199012	ENSMUSG00000030691	Fchsd2	BC034086|R74866|Sh3md3|mKIAA0769	FCH and double SH3 domains 2	protein-coding	1.3083598829703	0.777535542670598	1.8370833611751	1.60268733329097	0.736016748817764	1.01540671859366	1.56940233908221	0.754053415019902	-1.41783374823886	0.329525601964953	0.831942889324137
Merged-chr12-112802688-4	chr12	112802560	112802760	+	724.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-6315.0	NM_145450	217887.0	Mm.186678	NM_145450	ENSMUSG00000037594	BC022687	AW050009|C130001I08Rik|Clba1|Flj20080	cDNA sequence BC022687	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-108847196-4	chr8	108847052	108847252	+	985.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007496, intron 3 of 9)	intron (NM_007496, intron 3 of 9)	-89708.0	NR_037295	100526511.0		NR_037295	ENSMUSG00000093241	Mir3108	mir-3108|mmu-mir-3108	microRNA 3108	ncRNA	0.493079061444445	0.724846712044741	1.31105104244958	0.504624621730863	1.00768389785403	1.04935052965672	0.513503173272468	0.962727853245941	0.41299401944456	0.803104972445779	1
Merged-chr6-143151670-2	chr6	143151570	143151770	+	674.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153819, intron 2 of 8)	intron (NR_153819, intron 2 of 8)	2261.0	NR_153819	102633311.0	Mm.333484	NR_153819		Gm31108	Gm31169	predicted gene, 31108	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-113932770-2	chr9	113932670	113932870	+	728.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_013699, intron 2 of 15)	intron (NM_013699, intron 2 of 15)	1836.0	NM_013699	22221.0	Mm.28052	NM_013699	ENSMUSG00000009741	Ubp1	Cp2b|LBP-1a|LBP-1b|NF2d9	upstream binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-93100664-2	chr1	93100564	93100764	+	985.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001294149, intron 1 of 47)	CpG	1210.0	NM_001294149	16560.0	Mm.276408	NM_008440	ENSMUSG00000014602	Kif1a	ATSV|C630002N23Rik|Gm1626|Kns1	kinesin family member 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-23432762-2	chr1	23432662	23432862	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49587.0	NM_001081079	70155.0	Mm.28013	NM_001081079	ENSMUSG00000026158	Ogfrl1	2210417C17Rik	opioid growth factor receptor-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-17010041-2	chr11	17009941	17010141	+	753.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-1323.0	NM_019549	56193.0	Mm.98232	NM_019549	ENSMUSG00000020120	Plek	2010300B13Rik	pleckstrin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141193076-2	chr7	141192976	141193176	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001130444, intron 1 of 5)	intron (NM_001130444, intron 1 of 5)	928.0	NM_001130444	15461.0	Mm.334313	NM_008284	ENSMUSG00000025499	Hras	H-ras|Ha-ras|Harvey-ras|Hras-1|Hras1|Kras2|c-H-ras|c-Ha-ras|c-rasHa|ras	Harvey rat sarcoma virus oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-11002831-1	chr8	11002731	11002931	+	571.0	f0_balb.idr	intron (NM_001081212, intron 1 of 1)	intron (NM_001081212, intron 1 of 1)	-5019.0	NR_046017	619321.0	Mm.403007	NR_046017	ENSMUSG00000096938	9530052E02Rik	-	RIKEN cDNA 9530052E02 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-61666113-2	chr8	61666013	61666213	+	662.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001293772, intron 10 of 21)	intron (NM_001293772, intron 10 of 21)	-74944.0	NM_001293774	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-44383170-4	chr18	44383049	44383249	+	973.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027490, intron 1 of 10)	intron (NM_027490, intron 1 of 10)	2649.0	NM_027490	70640.0	Mm.87629	NM_027490	ENSMUSG00000024472	Dcp2	2410015D23Rik|5730537H01Rik|AL118268	decapping mRNA 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-83736171-4	chr8	83736096	83736296	+	845.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011925, intron 1 of 19)	RLTR11A2|LTR|ERVK	5115.0	NM_001163029	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	1.9783620003245	1.98082530994091	1.222126658488	1.8645429124067	1.99441583948776	1.99509710038879	2.16014773399253	1.74302819758929	0.517198334796953	0.608145693253473	0.974576632476413
Merged-chr19-6243037-1	chr19	6242937	6243137	+	584.0	f0_balb.idr	intron (NM_194348, intron 1 of 39)	intron (NM_194348, intron 1 of 39)	1369.0	NM_194348	329015.0	Mm.277384	NM_194348	ENSMUSG00000024773	Atg2a	1810013C15Rik|A830054M12|BC023754|mKIAA0404	autophagy related 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117829080-4	chr11	117828955	117829155	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027827, intron 2 of 10)	intron (NM_027827, intron 2 of 10)	-3041.0	NM_009387	21877.0	Mm.2661	NM_009387	ENSMUSG00000025574	Tk1	D530002A18Rik|Tk-1|Tk1a|Tk1b	thymidine kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-25043634-4	chr8	25043532	25043732	+	803.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_031257, exon 11 of 12)	exon (NM_031257, exon 11 of 12)	-4670.0	NM_001081187	330723.0	Mm.334452	NM_001081187	ENSMUSG00000037406	Htra4	B430206E18Rik	HtrA serine peptidase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-20106251-2	chr10	20106146	20106346	+	741.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008580, intron 18 of 29)	intron (NM_008580, intron 18 of 29)	-42674.0	NM_008635	17761.0	Mm.20928	NM_008635	ENSMUSG00000019996	Map7	E-MAP-115|MAP-7|Mtap7|R75000|mshi|mste|ste	microtubule-associated protein 7	protein-coding	0.650823945524943	0.498682185926401	1.44836304718495	0.472753744122836	0.456130213465712	1.82527438632611	1.22830421187634	0.474771857494239	1.09992587962061	0.510985343361951	0.94512318675548
Merged-chr15-89421947-2	chr15	89421847	89422047	+	724.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_004843, intron 17 of 26)	intron (NR_004843, intron 17 of 26)	3915.0	NM_009948	12895.0	Mm.227738	NM_009948	ENSMUSG00000078937	Cpt1b	Cpt1|Cpt1-m|Cpti|Cpti-m|M-cpti	carnitine palmitoyltransferase 1b, muscle	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-19001334-1	chr10	19001234	19001434	+	941.0	f1_c57bl6.idr	3' UTR (NM_009397, exon 9 of 9)	3' UTR (NM_009397, exon 9 of 9)	10629.0	NM_001166402	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128322456-4	chr10	128322378	128322578	+	996.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019953)	promoter-TSS (NM_019953)	19.0	NM_019953	56530.0	Mm.44220	NM_019953	ENSMUSG00000025381	Cnpy2	5330432A10Rik|AW229003|D10Bwg1546e|Tmem4|Zsig9	canopy FGF signaling regulator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-31804339-2	chr11	31804239	31804439	+	663.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_102312, intron 1 of 4)	intron (NR_102312, intron 1 of 4)	20208.0	NR_102310	414116.0	Mm.150222	NR_102310	ENSMUSG00000085772	D630024D03Rik	-	RIKEN cDNA D630024D03 gene	ncRNA	-1.31349849087795	-1.28274354783242	-1.29349452597086	-1.3023256995151	-1.3130151546297	-1.28041376602105	-0.694015972326031	-1.30074492367298	2.57396649482007	0.456321314346772	1
Merged-chr7-122010620-4	chr7	122010528	122010728	+	946.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028758, intron 3 of 16)	intron (NM_028758, intron 3 of 16)	10570.0	NM_028758	74105.0	Mm.29619	NM_028758	ENSMUSG00000030872	Gga2	1200007E24Rik|mKIAA1080	golgi associated, gamma adaptin ear containing, ARF binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-83985076-2	chr3	83984976	83985176	+	862.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172681, intron 3 of 34)	intron (NM_172681, intron 3 of 34)	55085.0	NM_172681	229473.0	Mm.28838	NM_172681	ENSMUSG00000033767	Tmem131l	D930015E06Rik|Kiaa0922|mKIAA0922	transmembrane 131 like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-94164498-3	chr13	94164423	94164623	+	807.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172589, intron 2 of 3)	intron (NM_172589, intron 2 of 3)	106727.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-33960481-2	chr17	33960381	33960581	+	689.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001357330, exon 10 of 20)	exon (NM_001357330, exon 10 of 20)	4391.0	NM_001357329	224705.0	Mm.448614	NM_172620	ENSMUSG00000024319	Vps52	ARE1|D130068D18|D430041K17Rik|SAC2|Sacm2l|tclw5	VPS52 GARP complex subunit	protein-coding	-1.27480050717774	-0.604729833679879	-1.25573295904267	-1.26493563944758	-1.27428069156472	-1.24210192204986	-1.25319678955844	-1.26328836405502	-2.6632876257018	0.439827081912762	1
Merged-chr12-108855162-2	chr12	108855062	108855262	+	634.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001012310, intron 4 of 5)	intron (NM_001012310, intron 4 of 5)	4033.0	NM_001012310	104910.0	Mm.202653	NM_001012310	ENSMUSG00000048856	Slc25a47	AI132487|AI876593|HDMCP	solute carrier family 25, member 47	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-12299889-4	chr12	12299809	12300009	+	861.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029758, intron 2 of 12)	intron (NM_029758, intron 2 of 12)	37770.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-186261499-1	chr1	186261399	186261599	+	590.0	f0_balb.idr	Intergenic	Intergenic	-144189.0	NM_146106	226791.0	Mm.257116	NM_146106	ENSMUSG00000039246	Lyplal1	BC027340|Q96AVO	lysophospholipase-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-77784459-3	chr11	77784367	77784567	+	920.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011586, intron 1 of 39)	intron (NM_011586, intron 1 of 39)	7232.0	NM_001291212	360013.0	Mm.341248	NM_011586	ENSMUSG00000000631	Myo18a	MAJN|MyoPDZ|MysPDZ|SP-R210	myosin XVIIIA	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-62470504-2	chr9	62470404	62470604	+	663.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175484, intron 2 of 11)	intron (NM_175484, intron 2 of 11)	66540.0	NM_175484	235431.0	Mm.335229	NM_175484	ENSMUSG00000041729	Coro2b	CLIPINC|E130012P22Rik	coronin, actin binding protein, 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-79924206-2	chr7	79924106	79924306	+	560.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3566.0	NM_009682	11778.0	Mm.220173	NM_009682	ENSMUSG00000063801	Ap3s2	[s]3B	adaptor-related protein complex 3, sigma 2 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-81412566-3	chr6	81412449	81412649	+	794.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	483114.0	NR_106091	102465711.0		NR_106091	ENSMUSG00000106154	Mir7232	mmu-mir-7232	microRNA 7232	ncRNA	0.142962004212022	1.17157318701897	-0.183622761036082	-0.190026168441814	-0.00816044399984264	-0.173642854293688	-0.181809574368286	-0.188900588676782	-3.4467652577129	0.112545823237775	1
Merged-chr4-150073309-4	chr4	150073221	150073421	+	742.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4867.0	NR_029751	723848.0		NR_029751	ENSMUSG00000065493	Mir34a	Mirn34a|mir-34a|mmu-mir-34a	microRNA 34a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-101298524-3	chr4	101298380	101298580	+	648.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-33198.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-36615010-2	chr16	36614910	36615110	+	578.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019388, intron 5 of 7)	intron (NM_019388, intron 5 of 7)	51067.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125313920-4	chr6	125313811	125314011	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010736)	promoter-TSS (NM_010736)	-26.0	NM_010736	17000.0	Mm.3122	NM_010736	ENSMUSG00000030339	Ltbr	AI256028|LTbetaR|Ltar|TNF-R-III|TNFCR|TNFR-RP|TNFR2-RP|TNFRrp|Tnfbr|Tnfrsf3	lymphotoxin B receptor	protein-coding	5.28987974305541	4.64706406449098	4.97734042172837	5.51940385349417	3.91041568799831	4.1706427133078	4.03010757114741	4.45163500876044	-1.23802095050846	0.000875252022611084	0.017386214846503
Merged-chr15-103308543-2	chr15	103308443	103308643	+	617.625	f1_balb.idr|f1_c57bl6.idr	exon (NM_030720, exon 2 of 2)	exon (NM_030720, exon 2 of 2)	1895.0	NM_030720	80910.0	Mm.160369	NM_030720	ENSMUSG00000063234	Gpr84	EX33	G protein-coupled receptor 84	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-35771444-4	chr18	35771343	35771543	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019912)	promoter-TSS (NM_019912)	-116.0	NM_019912	56550.0	Mm.180052	NM_019912	ENSMUSG00000091896	Ube2d2a	1500034D03Rik|Ubc2e|Ube2d2|ubc4	ubiquitin-conjugating enzyme E2D 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141137990-4	chr4	141137894	141138094	+	950.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001277195, intron 1 of 3)	intron (NM_001277195, intron 1 of 3)	1802.0	NR_102344	213491.0	Mm.332006	NM_174996	ENSMUSG00000040842	Szrd1	1110022I03|D4Ertd22e	SUZ RNA binding domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-18848550-4	chr6	18848430	18848630	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133939)	promoter-TSS (NM_133939)	-105.0	NM_133939	76522.0	Mm.275158	NM_133939	ENSMUSG00000044155	Lsm8	2010003I05Rik|AW214405|Naa38	LSM8 homolog, U6 small nuclear RNA associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31955153-4	chr14	31955032	31955232	+	813.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73971.0	NM_030166	78754.0	Mm.40681	NM_030166	ENSMUSG00000021903	Galnt15	4631401E18Rik|Galntl2|mpp-GalNAc-T15	polypeptide N-acetylgalactosaminyltransferase 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-177796111-4	chr1	177796004	177796204	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007422, intron 1 of 12)	CpG	405.0	NM_007422	11566.0	Mm.338021	NM_007422	ENSMUSG00000015961	Adss	AI314886|AS|Adss2	adenylosuccinate synthetase, non muscle	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-73044875-4	chr9	73044771	73044971	+	948.979126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023635)	promoter-TSS (NM_023635)	61.0	NM_001301230	11891.0	Mm.34867	NM_023635	ENSMUSG00000032202	Rab27a	2210402C08Rik|2410003M20Rik|4933437C11Rik|ash	RAB27A, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83292299-2	chr11	83292199	83292399	+	981.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_028363, intron 2 of 2)	intron (NR_028363, intron 2 of 2)	600.0	NR_028363	613254.0	Mm.383758	NR_028363	ENSMUSG00000093483	AA465934	-	expressed sequence AA465934	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-103365906-4	chr9	103365778	103365978	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001134427)	promoter-TSS (NM_001134427)	-98.0	NM_175565	321022.0	Mm.261025	NM_175565	ENSMUSG00000032803	Cdv3	2510010F10Rik|C230084J24Rik|C79446|TPP36	carnitine deficiency-associated gene expressed in ventricle 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-22126568-4	chr3	22126455	22126655	+	887.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030732, intron 1 of 15)	intron (NM_030732, intron 1 of 15)	49903.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-84105715-2	chr6	84105615	84105815	+	547.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077694, intron 22 of 54)	CpG	86329.0	NM_021469	26903.0	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-17688931-4	chr6	17688802	17689002	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5092.0	NM_001289626	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	5.60156484157927	5.7179693815334	5.73663049252361	5.78334120821725	5.73682086550163	5.93562138726827	5.86750437683894	5.44553593117043	0.0499018397355189	0.84036416202219	0.998431161219273
Merged-chr16-85056399-1	chr16	85056299	85056499	+	678.0	f0_balb.idr	exon (NM_001198824, exon 6 of 17)	exon (NM_001198824, exon 6 of 17)	84188.0	NR_045889	100038614.0	Mm.441351	NR_045889	ENSMUSG00000115518	Gm10791	-	predicted gene 10791	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-145291667-1	chr7	145291567	145291767	+	569.0	f1_balb.idr	Intergenic	Intergenic	-7656.0	NR_132642	233979.0	Mm.102235	NM_146206	ENSMUSG00000048677	Tpcn2	D830047E22Rik|Gm35086	two pore segment channel 2	protein-coding	-1.32440223303897	-1.29339468673833	-0.717877708899544	-1.31276353204239	-1.32392690786997	-1.29109028300231	-1.30162128075409	-1.31119997543009	-2.49510383040271	0.470258445164311	1
Merged-chr7-127759945-4	chr7	127759859	127760059	+	872.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172748, intron 7 of 10)	intron (NM_172748, intron 7 of 10)	-9856.0	NM_198424	269999.0	Mm.36852	NM_198424	ENSMUSG00000043964	Orai3	9930124N15|BC061259|Tmem142c	ORAI calcium release-activated calcium modulator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-26640683-6	chr14	26640603	26640803	+	780.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007479, intron 1 of 5)	intron (NM_007479, intron 1 of 5)	2569.0	NM_007479	11843.0	Mm.297768	NM_007479	ENSMUSG00000021877	Arf4	AA407803	ADP-ribosylation factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-36865695-2	chr14	36865595	36865795	+	589.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53840.0	NM_001347503	72972.0	Mm.27621	NM_027045	ENSMUSG00000058690	Ccser2	1700012P13Rik|2900054P12Rik|AI035535|AW108503|Fam190b|Gcap14	coiled-coil serine rich 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88138401-4	chr3	88138304	88138504	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3968.0	NM_001310593	17261.0	Mm.28184	NM_133665	ENSMUSG00000001419	Mef2d	C80750	myocyte enhancer factor 2D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-31182887-2	chr2	31182787	31182987	+	574.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178760, intron 9 of 17)	intron (NM_178760, intron 9 of 17)	30571.0	NM_178760	277463.0	Mm.236074	NM_178760	ENSMUSG00000000194	Gpr107	9930033D15Rik|AI790205|C530034M11|mKIAA1624	G protein-coupled receptor 107	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-43844755-2	chr5	43844655	43844855	+	836.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-24054.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-88459965-3	chr13	88459860	88460060	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-361512.0	NM_010103	13612.0	Mm.125580	NM_010103	ENSMUSG00000034488	Edil3	Del-1|Del1|Sox2-cre|Sox2Cre|Tg(Sox2-cre)1Amc	EGF-like repeats and discoidin I-like domains 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-85502637-4	chr8	85502532	85502732	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173866, intron 2 of 11)	intron (NM_173866, intron 2 of 11)	10015.0	NM_173866	108682.0	Mm.200423	NM_173866	ENSMUSG00000031700	Gpt2	4631422C05Rik|ALT2|AU014768|AU041193|C87201	glutamic pyruvate transaminase (alanine aminotransferase) 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-108809929-4	chr9	108809833	108810033	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030729, intron 1 of 12)	intron (NM_030729, intron 1 of 12)	1553.0	NM_030729	80987.0	Mm.192416	NM_030729	ENSMUSG00000032598	Nckipsd	AF3P21|DIP1|ORF1|SPIN90|WASLBP|WISH|Wasbp	NCK interacting protein with SH3 domain	protein-coding	4.39521429893888	4.09999499493979	4.03537455919964	4.64992380095988	4.61671849377593	4.33902649153039	4.13534633573945	4.92312531385692	0.28127810477961	0.481816288380372	0.92959345432907
Merged-chr13-56183766-4	chr13	56183710	56183910	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4925.0	NM_001168615	212937.0	Mm.116697	NM_145976	ENSMUSG00000049625	Tifab	-	TRAF-interacting protein with forkhead-associated domain, family member B	protein-coding	3.26357021849509	2.30915889684028	3.66718432491284	3.2823517656356	3.64760898304457	2.857369934877	3.55670033388238	3.2146179318297	0.222083859697383	0.719077391522594	0.998431161219273
Merged-chr13-12423345-3	chr13	12423258	12423458	+	655.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144835, intron 28 of 44)	RMER1B|Other|Other	27983.0	NM_144835	217995.0	Mm.171186	NM_144835	ENSMUSG00000050244	Heatr1	AA517551|B130016L12Rik|BC019693	HEAT repeat containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-149781212-4	chr4	149781092	149781292	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6925.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	2.56947854129018	2.03223924476731	3.04881925701197	1.7017339655757	2.4950478020672	2.55329718073372	2.70642515073279	3.3084835550051	0.715217348623738	0.372339883618383	0.865109408625856
Merged-chr10-80054699-4	chr10	80054601	80054801	+	989.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008162, exon 3 of 7)	exon (NM_008162, exon 3 of 7)	682.0	NM_001037741	625249.0	Mm.332810	NM_008162	ENSMUSG00000075706	Gpx4	GPx-4|GSHPx-4|PHGPx|mtPHGPx|snGPx	glutathione peroxidase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-101208300-1	chr14	101208200	101208400	+	659.0	f1_balb.idr	Intergenic	RMER19C|LTR|ERVK	-8231.0	NM_029680	76627.0	Mm.31415	NM_029680	ENSMUSG00000042888	Prr30	1700110M21Rik	proline rich 30	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-45556795-6	chr17	45556699	45556899	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008690, intron 1 of 5)	intron (NM_008690, intron 1 of 5)	1099.0	NM_001304956	18037.0	Mm.57043	NM_008690	ENSMUSG00000023947	Nfkbie	I-kappa-B-epsilon|IKBE|IkB-E|NF-kappa-BIE|ikB-epsilon	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, epsilon	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-21986174-4	chr14	21986087	21986287	+	941.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_145459, exon 3 of 3)	exon (NM_145459, exon 3 of 3)	3414.0	NM_145459	218820.0	Mm.292401	NM_145459	ENSMUSG00000039081	Zfp503	AI181838|B830002A16Rik|Nolz-1|Nolz1|Znf503	zinc finger protein 503	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-121053675-1	chr11	121053575	121053775	+	765.666687	f1_c57bl6.idr	3' UTR (NM_026907, exon 5 of 5)	3' UTR (NM_026907, exon 5 of 5)	9894.0	NM_026907	58210.0	Mm.116986	NM_026907	ENSMUSG00000039364	Sectm1b	1810003C24Rik|K12|Sectm1	secreted and transmembrane 1B	protein-coding	4.05449007060646	4.81197740679849	3.84010411757522	3.66682153426391	2.22119174833784	2.08047487761758	3.29523277774054	3.54031418331552	-1.81322384302093	0.00294160056680384	0.0448868696916439
Merged-chr10-43478077-4	chr10	43477976	43478176	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1064.0	NM_199028	331623.0	Mm.490388	NM_199028	ENSMUSG00000038214	Bend3	mKIAA1553	BEN domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-117052972-4	chr13	117052862	117053062	+	916.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1L|LTR|ERVL-MaLR	-27446.0	NM_001081009	52552.0	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140096776-2	chr5	140096676	140096876	+	568.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_152617, intron 14 of 16)	intron (NR_152617, intron 14 of 16)	78142.0	NM_001359027	17120.0	Mm.27250	NM_010752	ENSMUSG00000029554	Mad1l1	AI173502|AW550425|Mad1	MAD1 mitotic arrest deficient 1-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-144894414-5	chr4	144894312	144894512	+	872.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357274, intron 2 of 6)	intron (NM_001357274, intron 2 of 6)	1275.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-21274326-4	chr19	21274197	21274397	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009551, intron 1 of 5)	intron (NM_009551, intron 1 of 5)	2019.0	NM_009551	22682.0	Mm.292405	NM_009551	ENSMUSG00000024750	Zfand5	2310057A04Rik|5830475F03Rik|AA415485|Za20d2|Zfp216	zinc finger, AN1-type domain 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-132116320-4	chr3	132116204	132116404	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020265, intron 1 of 3)	intron (NM_020265, intron 1 of 3)	31012.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-90032964-2	chr7	90032864	90033064	+	665.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_110365, intron 1 of 5)	MTE-int|LTR|ERVL-MaLR	3805.0	NR_110364	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-35291109-1	chr11	35291009	35291209	+	590.0	f1_c57bl6.idr	intron (NM_011412, intron 4 of 35)	intron (NM_011412, intron 4 of 35)	169653.0	NM_011412	20564.0	Mm.478604	NM_011412	ENSMUSG00000056427	Slit3	Slil2|Slit1|b2b2362.1Clo	slit guidance ligand 3	protein-coding	-0.247747310444725	-0.230036191743287	-0.235796586287034	0.703820929048232	-0.246630306463514	-0.228743141576948	-0.234522668736422	0.350810347952728	-0.966751237084346	0.699890415949433	1
Merged-chr4-145195028-4	chr4	145194948	145195148	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001276465)	promoter-TSS (NM_001276465)	-43.0	NM_001276465	230895.0	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-52056343-4	chr16	52056243	52056443	+	916.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033238, intron 3 of 17)	intron (NM_001033238, intron 3 of 17)	24794.0	NM_001033238	208650.0	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-97116166-3	chr9	97116066	97116266	+	625.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5125.0	NM_138756	192287.0	Mm.228067	NM_138756	ENSMUSG00000032449	Slc25a36	C330005L02Rik	solute carrier family 25, member 36	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-99150113-3	chr11	99150016	99150216	+	721.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007719, intron 1 of 2)	intron (NM_007719, intron 1 of 2)	4961.0	NM_001301713	12775.0	Mm.2932	NM_007719	ENSMUSG00000037944	Ccr7	CC-CKR-7|CCR-7|CD197|Cdw197|Cmkbr7|EBI1|Ebi1h	chemokine (C-C motif) receptor 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-85061958-2	chr18	85061858	85062058	+	651.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-110434.0	NM_025969	67105.0	Mm.250617	NM_025969	ENSMUSG00000024645	Timm21	1700034H14Rik|2700002I20Rik	translocase of inner mitochondrial membrane 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-40924940-3	chr14	40924841	40925041	+	889.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145928, intron 2 of 8)	MER58A|DNA|hAT-Charlie	23268.0	NM_001316748	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78178560-4	chr15	78178469	78178669	+	783.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4461.0	NM_025931	67042.0	Mm.30191	NM_025931	ENSMUSG00000016637	Ift27	2600013G09Rik|Rabl4	intraflagellar transport 27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-38882240-2	chr6	38882140	38882340	+	610.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6050.0	NM_001294143	15258.0	Mm.23790	NM_010433	ENSMUSG00000061436	Hipk2	1110014O20Rik|B230339E18Rik|Stank	homeodomain interacting protein kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-72337364-2	chr8	72337264	72337464	+	805.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18302.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	2.28749328574081	1.87984097533104	1.21274526226522	2.33064572634118	2.30705421357081	1.8935577365503	1.21868567841074	2.34304813534674	0.0360350721279759	0.973265114934671	0.998431161219273
Merged-chr2-45276913-4	chr2	45276826	45277026	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-159484.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128542807-2	chr10	128542707	128542907	+	858.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_134003)	TTS (NM_134003)	4937.0	NM_134003	103284.0	Mm.68289	NM_134003	ENSMUSG00000039810	Zc3h10	AI790326	zinc finger CCCH type containing 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-44601122-3	chr11	44601018	44601218	+	974.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER44B|DNA|TcMar-Tigger	14801.0	NR_126460	75389.0	Mm.261421	NR_126460	ENSMUSG00000086501	4930597A21Rik	-	RIKEN cDNA 4930597A21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19268633-2	chr7	19268533	19268733	+	991.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009499, intron 1 of 12)	intron (NM_009499, intron 1 of 12)	3221.0	NM_001282021	22323.0	Mm.9684	NM_009499	ENSMUSG00000030403	Vasp	-	vasodilator-stimulated phosphoprotein	protein-coding	-0.337137868609764	-0.137763579867121	-0.328965951855109	-0.0383614651805946	-0.195506156037375	0.281391908460797	-0.328084663774257	-0.331506859184643	0.875287566264606	0.709290879112552	1
Merged-chr12-42187249-3	chr12	42187138	42187338	+	902.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2B|LINE|L1	-701181.0	NM_010733	16981.0	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-89871664-4	chr16	89871543	89871743	+	968.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009384, intron 6 of 27)	intron (NM_009384, intron 6 of 27)	-53291.0	NM_001145887	21844.0	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125071887-4	chr6	125071783	125071983	+	952.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163268, intron 1 of 1)	intron (NM_001163268, intron 1 of 1)	606.0	NM_001163268	381810.0	Mm.333386	NM_001163268	ENSMUSG00000067714	Lpar5	GPR93|Gm1072|Gpr92|LPA5	lysophosphatidic acid receptor 5	protein-coding	0.713198987246382	0.0247972516659311	0.019449507143055	0.177436056053409	0.572354041191013	0.0260031235163414	0.198783876317761	0.0160457220949729	-0.329724288147621	0.876067938061438	1
Merged-chr8-36931826-1	chr8	36931726	36931926	+	576.0	f0_c57.idr	intron (NM_001194940, intron 2 of 17)	intron (NM_001194940, intron 2 of 17)	20616.0	NM_001194940	50768.0	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	-0.538646825448836	-0.783872646517303	-0.350254767180644	-0.788903680334781	-0.791978702207047	-0.593841712956467	-0.78609142941066	-0.78852239610207	-1.95386874538454	0.485193934488522	1
Merged-chr4-144988522-1	chr4	144988422	144988622	+	798.0	f0_balb.idr	intron (NM_001276465, intron 67 of 69)	intron (NM_001276465, intron 67 of 69)	95385.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167294462-2	chr2	167294362	167294562	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53925.0	NM_008968	19223.0	Mm.2339	NM_008968	ENSMUSG00000017969	Ptgis	Cyp8|Cyp8a1|Pgis	prostaglandin I2 (prostacyclin) synthase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-94519036-2	chr11	94518936	94519136	+	558.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_170671, intron 1 of 18)	intron (NM_170671, intron 1 of 18)	2466.0	NM_170671	104601.0	Mm.84725	NM_170671	ENSMUSG00000039110	Mycbpap	4932408B01Rik|AMAP-1|AW125474	MYCBP associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-120504384-2	chr5	120504345	120504545	+	627.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023625)	promoter-TSS (NM_023625)	-822.0	NM_023625	71772.0	Mm.100065	NM_023625	ENSMUSG00000029598	Plbd2	1300012G16Rik|AU019810|P76	phospholipase B domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5428164-2	chr19	5428064	5428264	+	822.333313	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001256515)	TTS (NM_001256515)	3020.0	NM_001256515	107242.0	Mm.329658	NM_134149	ENSMUSG00000047423	AI837181	Bles03|N28173	expressed sequence AI837181	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-139252607-4	chr4	139252512	139252712	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037761, intron 2 of 9)	intron (NM_001037761, intron 2 of 9)	58096.0	NR_151463	212555.0	Mm.45131	NM_145384	ENSMUSG00000028744	Pqlc2	BC019216	PQ loop repeat containing 2	protein-coding	5.15738361101879	4.14583205173164	5.21410596661311	5.1482054347731	3.97827258739559	4.63003658545921	4.94078838576608	3.98191789809951	-0.674748510570182	0.0922595140083685	0.46996730076666
Merged-chr13-37820659-2	chr13	37820559	37820759	+	609.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5379.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-29168144-4	chr19	29168059	29168259	+	970.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32880.0	NR_029778	724062.0		NR_029778	ENSMUSG00000065556	Mir101b	Mirn101b|mir-101b	microRNA 101b	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-60215363-2	chr2	60215263	60215463	+	612.299988	f1_balb.idr|f1_c57bl6.idr	intron (NM_020575, intron 1 of 9)	intron (NM_020575, intron 1 of 9)	5427.0	NM_020575	57438.0	Mm.260635	NM_020575	ENSMUSG00000026977	March7	Axo|Axot|Gtrgeo17	membrane-associated ring finger (C3HC4) 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135856569-4	chr4	135856483	135856683	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080387, intron 1 of 5)	CpG	512.0	NM_010178	14105.0	Mm.10229	NM_010178	ENSMUSG00000028676	Srsf10	FUSIP2|Fusip1|NSSR1|NSSR2|Nssr|SRrp40|Sfrs13a|Srsf13a|TASR|TASR1|TASR2	serine/arginine-rich splicing factor 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-48894104-1	chr9	48894004	48894204	+	639.0	f1_balb.idr	Intergenic	Intergenic	16995.0	NM_013561	15561.0	Mm.4831	NM_013561	ENSMUSG00000032269	Htr3a	5-HT3	5-hydroxytryptamine (serotonin) receptor 3A	protein-coding	0.386301720879506	1.03066785512234	0.24291371482718	0.236662847604834	0.650797035785324	1.0439568333116	0.2446926080904	0.237758070456356	0.362016291105461	0.849447233573904	1
Merged-chr17-84141087-4	chr17	84141068	84141268	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46779.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115236028-4	chr5	115235935	115236135	+	995.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026398, intron 1 of 5)	intron (NM_026398, intron 1 of 5)	184.0	NM_026398	117109.0	Mm.24636	NM_026398	ENSMUSG00000060152	Pop5	1500019J17Rik|2700077E03Rik|AW049989|Rnasep3	processing of precursor 5, ribonuclease P/MRP family (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-183094954-4	chr1	183094850	183095050	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001278218, intron 8 of 8)	intron (NM_001278218, intron 8 of 8)	52607.0	NM_001278220	68897.0	Mm.327216	NM_026866	ENSMUSG00000030768	Disp1	1190008H24Rik|DispA	dispatched RND transporter family member 1	protein-coding	-0.780507411323491	-0.770201048850769	-0.0876146456965483	-0.776182298477195	-0.499830447499526	-0.769368699703383	-0.772832506895163	-0.775727174717696	-1.48766019666651	0.617325031110839	1
Merged-chr10-115311455-4	chr10	115311339	115311539	+	951.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024454, intron 1 of 6)	intron (NM_024454, intron 1 of 6)	4152.0	NM_024454	216344.0	Mm.21936	NM_024454	ENSMUSG00000020132	Rab21	9630024B22	RAB21, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-132333800-4	chr1	132333689	132333889	+	810.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_028778)	TTS (NM_028778)	17664.0	NM_028778	74137.0	Mm.100666	NM_028778	ENSMUSG00000009772	Nuak2	1200013B22Rik|Omphk2|Snark|mKIAA0537	NUAK family, SNF1-like kinase, 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-4938682-4	chr7	4938664	4938864	+	876.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173008, intron 12 of 13)	B3|SINE|B2	12920.0	NM_173008	269855.0	Mm.44190	NM_173008	ENSMUSG00000035279	Ssc5d	A430110N23Rik|S5D-SRCRB	scavenger receptor cysteine rich family, 5 domains	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115172921-4	chr11	115172827	115173027	+	786.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012030, intron 1 of 5)	intron (NM_012030, intron 1 of 5)	9586.0	NM_012030	26941.0	Mm.27842	NM_012030	ENSMUSG00000020733	Slc9a3r1	EBP-50|NHE-RF|NHERF-1|NHERF1	solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67715196-4	chr10	67715067	67715267	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-143208.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-53238574-4	chr18	53238462	53238662	+	997.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7100.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-65138421-2	chr6	65138321	65138521	+	734.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019455, intron 1 of 5)	intron (NM_019455, intron 1 of 5)	6309.0	NM_019455	54486.0	Mm.410688	NM_019455	ENSMUSG00000029919	Hpgds	H-PGDS|Ptgds2	hematopoietic prostaglandin D synthase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-65198151-2	chr5	65198051	65198251	+	583.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-1545.0	NM_001359880	213081.0	Mm.127550	NM_153391	ENSMUSG00000037890	Wdr19	C330027H04Rik|D330023L08Rik|DYF2|Ift144|PWDMP|mKIAA1638	WD repeat domain 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-143095741-4	chr7	143095638	143095838	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1096.0	NM_020277	56843.0	Mm.286668	NM_020277	ENSMUSG00000009246	Trpm5	9430099A16Rik|LTrpC-5|Ltrpc5|Mtr1	transient receptor potential cation channel, subfamily M, member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-103339155-2	chr15	103339055	103339255	+	962.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013866, intron 1 of 7)	intron (NM_013866, intron 1 of 7)	931.0	NM_013866	29813.0	Mm.14099	NM_013866	ENSMUSG00000000552	Zfp385a	Hzf|Zfp385|Znf385a	zinc finger protein 385A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127845065-2	chr7	127844965	127845165	+	788.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_009294, intron 5 of 10)	ID_B1|SINE|B4	3257.0	NM_009294	20909.0	Mm.24867	NM_009294	ENSMUSG00000030805	Stx4a	Stx4|Syn-4|Syn4	syntaxin 4A (placental)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25432936-2	chr7	25432836	25433036	+	629.125	f1_balb.idr|f1_c57bl6.idr	intron (NR_015569, intron 4 of 6)	intron (NR_015569, intron 4 of 6)	-20050.0	NM_153576	232983.0	Mm.10545	NM_153576	ENSMUSG00000060188	Cxcl17	VCC-1|Vcc1	chemokine (C-X-C motif) ligand 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-33930763-5	chr8	33930718	33930918	+	989.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286168)	promoter-TSS (NM_001286168)	-955.0	NM_001042675	19663.0	Mm.323997	NM_019733	ENSMUSG00000031586	Rbpms	2010300K22Rik|2700019M19Rik|AU017537|RBP-MS|hermes	RNA binding protein gene with multiple splicing	protein-coding	4.63381889750936	4.29258573953345	5.08306913667584	5.22820015921194	4.30061833611928	4.25296810767189	4.77524861409414	4.59803298164347	-0.450418228381832	0.230100746638413	0.72394357324632
Merged-chr11-103379981-1	chr11	103379881	103380081	+	1000.0	f1_balb.idr	intron (NM_183034, intron 6 of 11)	intron (NM_183034, intron 6 of 11)	-16289.0	NM_001205236	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-31194068-1	chr16	31193968	31194168	+	553.0	f0_balb.idr	intron (NM_030138, intron 1 of 22)	Tigger7|DNA|TcMar-Tigger	7170.0	NM_030138	78618.0	Mm.274646	NM_030138	ENSMUSG00000049076	Acap2	4832442G16|9530039J15Rik|CNT-B2|Centb2|mKIAA0041	ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-136106593-1	chr4	136106493	136106693	+	641.0	f1_c57bl6.idr	Intergenic	Intergenic	-37229.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	1.88566698152211	1.83992603277506	1.87823464229206	0.952333274508613	1.63826879458221	1.58693879594195	0.970133900782406	1.16331494658291	-1.08338208090366	0.385970774956239	0.876318810939384
Merged-chr3-97658209-4	chr3	97658107	97658307	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_182997)	promoter-TSS (NM_182997)	-5.0	NM_182997	108097.0	Mm.31175	NM_182997	ENSMUSG00000038205	Prkab2	5730553K21Rik|AW049591|BB124140	protein kinase, AMP-activated, beta 2 non-catalytic subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95990583-4	chr3	95990466	95990666	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023320, intron 5 of 5)	intron (NM_023320, intron 5 of 5)	5056.0	NR_045872	668224.0	Mm.357766	NR_045872		Gm9054	EG668224	predicted gene 9054	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141245968-2	chr4	141245868	141246068	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172520, intron 2 of 16)	intron (NM_172520, intron 2 of 16)	3084.0	NM_172520	213649.0	Mm.134460	NM_172520	ENSMUSG00000028919	Arhgef19	6030432F23|6430573B13Rik|WGEF	Rho guanine nucleotide exchange factor (GEF) 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-83950663-4	chr12	83950569	83950769	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023633)	promoter-TSS (NM_023633)	61.0	NM_023633	71952.0	Mm.251483	NM_023633	ENSMUSG00000046791	Riox1	2410016O06Rik|MAPJD|NO66	ribosomal oxygenase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-85326716-6	chr9	85326646	85326846	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001160378, exon 2 of 3)	exon (NM_001160378, exon 2 of 3)	378.0	NM_001160378	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4059391-4	chr19	4059237	4059437	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001362043, exon 1 of 6)	5' UTR (NM_001362043, exon 1 of 6)	110.0	NM_144869	225884.0	Mm.440201	NM_144869	ENSMUSG00000058216	Gstp3	-	glutathione S-transferase pi 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-96087167-3	chr6	96087069	96087269	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-25985.0	NM_182808	320265.0	Mm.489890	NM_182808	ENSMUSG00000059187	Fam19a1	C630007B19Rik|FAM19A1 TAFA-1|TAFA1|Tafa-1	family with sequence similarity 19, member A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-45418195-2	chr9	45418095	45418295	+	584.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_040732, intron 4 of 4)	intron (NR_040732, intron 4 of 4)	-12098.0	NM_001081270	114873.0	Mm.325499	NM_001081270	ENSMUSG00000032087	Dscaml1	4921507G06Rik|4930435C18Rik|BB239540|mKIAA1132	DS cell adhesion molecule like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-93778349-1	chr13	93778249	93778449	+	726.75	f0_balb.idr	intron (NM_009712, intron 1 of 7)	L1_Mus2|LINE|L1	6670.0	NM_009712	11881.0	Mm.300178	NM_009712	ENSMUSG00000042082	Arsb	1110007C02Rik|AI480648|As-1|As-1r|As-1s|As-1t|As1|As1-r|As1-s|As1-t|Asr-1|Ast-1	arylsulfatase B	protein-coding	2.98213436121396	2.61046523678452	2.97993604294903	1.70664780470786	3.32785431320512	1.53929682051705	3.85956228953696	2.70255169099245	0.784562799804572	0.347442605874431	0.847509430458407
Merged-chr3-95959321-1	chr3	95959221	95959421	+	544.0	f1_c57bl6.idr	Intergenic	B3|SINE|B2	-26189.0	NR_045872	668224.0	Mm.357766	NR_045872		Gm9054	EG668224	predicted gene 9054	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-152696951-4	chr2	152696851	152697051	+	971.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010376, intron 10 of 11)	intron (NM_010376, intron 10 of 11)	9803.0	NM_025543	66405.0	Mm.440291	NM_025543	ENSMUSG00000042814	Mcts2	2400002F11Rik|MCT-2	malignant T cell amplified sequence 2	protein-coding	3.40719394568919	3.19820129204801	2.47947172987952	3.63865955252861	3.31660525294575	3.31657773801369	2.78386823337314	1.56474265877227	-0.563642124388889	0.44457771553941	0.912265842646861
Merged-chr5-32728956-1	chr5	32728856	32729056	+	894.0	f0_balb.idr	Intergenic	Intergenic	17386.0	NM_001347332	320951.0	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-37964245-3	chr13	37964148	37964348	+	802.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29960.0	NM_025965	107513.0	Mm.426670	NM_025965	ENSMUSG00000021427	Ssr1	2510001K09Rik|6330400D04|AI159733|AI452176|SSR|TRAPA	signal sequence receptor, alpha	protein-coding	0.701959272933205	0.458667474726126	1.01624295755121	0.44562904647093	0.819302149169465	0.460324919927689	0.913233897704945	0.983160500283068	0.730494062861728	0.66582073482717	1
Merged-chr4-138041743-4	chr4	138041638	138041838	+	987.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355699, intron 1 of 32)	intron (NM_001355699, intron 1 of 32)	43913.0	NM_001355700	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	1.36266210251764	0.998195746751997	1.26734839804859	1.62310200450844	1.17459081633677	0.793909827535533	0.977032050970087	1.10517545685592	-1.41404507979512	0.287757224917234	0.793449317735943
Merged-chr15-28026767-2	chr15	28026667	28026867	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081302)	promoter-TSS (NM_001081302)	-919.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-132765795-3	chr7	132765708	132765908	+	745.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347630, intron 2 of 3)	intron (NM_001347630, intron 2 of 3)	11108.0	NM_001347630	77938.0	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141616426-2	chr7	141616326	141616526	+	621.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357068, intron 10 of 21)	Lx9|LINE|L1	-2679.0	NR_040337	100036523.0	Mm.398994	NR_040337	ENSMUSG00000097170	Gm16982	-	predicted gene, 16982	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71548741-2	chr17	71548641	71548841	+	703.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3320.0	NM_001142631	70891.0	Mm.477599	NM_029254	ENSMUSG00000052525	Spdya	4921517J08Rik|4930548B21Rik|GS4|MLZ-465|Spdy1	speedy/RINGO cell cycle regulator family, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-59590044-4	chr10	59589951	59590151	+	912.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033259, intron 1 of 7)	MLT1N2|LTR|ERVL-MaLR	26641.0	NM_001033259	215999.0	Mm.296470	NM_001033259	ENSMUSG00000009647	Mcu	2010012O16Rik|AV064928|C10orf42|Ccdc109a|D130073L02Rik|Gm64	mitochondrial calcium uniporter	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122523365-3	chr8	122523256	122523456	+	813.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037298, intron 1 of 50)	intron (NM_001037298, intron 1 of 50)	27973.0	NM_001037298	234839.0	Mm.37324	NM_001037298	ENSMUSG00000014444	Piezo1	9630020g22|Fam38a|mKIAA0233	piezo-type mechanosensitive ion channel component 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-121163594-3	chr3	121163458	121163658	+	849.166626	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028456, intron 1 of 4)	intron (NM_028456, intron 1 of 4)	8137.0	NM_028456	66568.0	Mm.263163	NM_025637	ENSMUSG00000028133	Rwdd3	2510027J23Rik|3110037C01Rik|AI035684|AI662458|Rsume|X2CR1	RWD domain containing 3	protein-coding	4.41898189891495	3.90133838034995	4.41886975684366	3.99865306761411	3.88904106093614	3.6701428622832	3.7222675014481	3.33915918070427	-0.752013663715925	0.100058745994494	0.491875785758783
Merged-chr2-36213306-2	chr2	36213206	36213406	+	645.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-17120.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26949427-2	chr17	26949327	26949527	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001281491, intron 3 of 18)	intron (NM_001281491, intron 3 of 18)	-1308.0	NR_037244	100526534.0		NR_037244	ENSMUSG00000093118	Mir3083	mir-3083|mmu-mir-3083	microRNA 3083	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133584368-4	chr4	133584266	133584466	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133884)	promoter-TSS (NM_133884)	-7.0	NM_001290742	100210.0	Mm.274001	NM_133884	ENSMUSG00000028848	Gpn2	AI838661|Atpbd1b|R74630	GPN-loop GTPase 2	protein-coding	3.01775659860744	3.55127916569379	3.76922556225583	2.77019673562871	2.95548045601448	3.57640412703517	2.59432831555022	3.19640767092691	-0.344478408747362	0.579808693381095	0.966097310876731
Merged-chr19-6367489-2	chr19	6367389	6367589	+	827.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360393, intron 2 of 11)	MT2B|LTR|ERVL	3799.0	NR_122118	22668.0	Mm.256422	NM_011750	ENSMUSG00000024949	Sf1	BBP|MZFM|WBP4|Zfp162	splicing factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-113044537-2	chr10	113044437	113044637	+	548.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-115511.0	NM_001033474	382423.0	Mm.431239	NM_001033474	ENSMUSG00000074748	Atxn7l3b	4921506J03Rik|6230409E21Rik|AI315132	ataxin 7-like 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-37651783-1	chr16	37651683	37651883	+	612.5	f0_balb.idr	intron (NM_026610, intron 1 of 2)	intron (NM_026610, intron 1 of 2)	2585.0	NM_026610	68194.0	Mm.379154	NM_026610	ENSMUSG00000022820	Ndufb4	0610006N12Rik|1300010H20Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-139161243-4	chr4	139161131	139161331	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	19424.0	NR_033543	100038595.0	Mm.385206	NR_033543	ENSMUSG00000073739	Gm16287	-	predicted gene 16287	ncRNA	2.63698507402878	3.13661147885379	2.38099025525673	2.31520853551525	2.56340752803166	3.24124374191221	2.77505530032094	2.46167022381823	0.264651310596336	0.715679521755989	0.998431161219273
Merged-chr13-48227876-4	chr13	48227774	48227974	+	984.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_102303, intron 1 of 2)	CpG	-33553.0	NM_031166	15904.0	Mm.458006	NM_031166	ENSMUSG00000021379	Id4	Idb4|bHLHb27	inhibitor of DNA binding 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-4620767-2	chr11	4620667	4620867	+	663.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_027798, exon 3 of 3)	non-coding (NR_027798, exon 3 of 3)	6999.0	NR_027798	327860.0	Mm.186065	NM_177799	ENSMUSG00000056288	Gm11961	-	predicted gene 11961	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-75315174-4	chr4	75315060	75315260	+	991.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR26|LTR|ERVK	-36868.0	NM_025849	66928.0	Mm.24332	NM_025849	ENSMUSG00000028398	Dmac1	1700027K24Rik|3110001D03Rik|Tmem261	distal membrane arm assembly complex 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-108983292-4	chr8	108983216	108983416	+	710.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4c|LINE|L1	46456.0	NR_037295	100526511.0		NR_037295	ENSMUSG00000093241	Mir3108	mir-3108|mmu-mir-3108	microRNA 3108	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-76959567-2	chr12	76959467	76959667	+	715.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001146176, intron 1 of 3)	B1F|SINE|Alu	2681.0	NM_008558	17187.0	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122702994-4	chr5	122702912	122703112	+	756.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-4532.0	NM_001310720	18438.0	Mm.290884	NM_011026	ENSMUSG00000029470	P2rx4	AI504491|AW555605|D5Ertd444e|P2X4	purinergic receptor P2X, ligand-gated ion channel 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-4765594-2	chr13	4765494	4765694	+	647.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-156430.0	NM_018859	56043.0	Mm.251908	NM_018859	ENSMUSG00000045410	Akr1e1	1810061I10Rik|Akr1e2	aldo-keto reductase family 1, member E1	protein-coding	-0.530349266862623	-0.30018727572289	-0.780841617779217	-0.624405089557466	-0.786244193955782	-0.776884323038131	-0.780198821934883	-0.782694074836052	-3.03041973988096	0.268939574387051	1
Merged-chr18-36208807-3	chr18	36208722	36208922	+	639.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11662.0	NM_001167891	100042150.0	Mm.380390	NM_001167891	ENSMUSG00000060275	Nrg2	Don1|NTAK	neuregulin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116626937-1	chr11	116626837	116627037	+	555.0	f0_c57.idr	promoter-TSS (NM_172572)	promoter-TSS (NM_172572)	82.0	NM_172572	217344.0	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	2.11715594384505	2.57844019643101	1.43505550991959	2.41450790551484	1.8144185703952	1.2224981771452	1.4447367523681	2.34183687741715	-1.06051922326955	0.308103942941254	0.809008850468887
Merged-chr1-138517559-3	chr1	138517456	138517656	+	747.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021605, intron 5 of 9)	intron (NM_021605, intron 5 of 9)	102201.0	NM_021605	59125.0	Mm.143817	NM_021605	ENSMUSG00000026393	Nek7	2810460C19Rik|AU020186	NIMA (never in mitosis gene a)-related expressed kinase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-54902343-4	chr14	54902250	54902450	+	929.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	8207.0	NM_019402	54196.0	Mm.7723	NM_019402	ENSMUSG00000022194	Pabpn1	PAB2|Pabp3|mPABII	poly(A) binding protein, nuclear 1	protein-coding	2.32395541621444	2.61548231792648	2.43813937042459	1.63956199948251	1.97456007105997	1.27591869942854	1.69537869480097	1.95074756672222	-1.42420337793004	0.145063492738427	0.594965286876362
Merged-chr2-66192015-4	chr2	66191915	66192115	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001047604, intron 25 of 28)	intron (NM_001047604, intron 25 of 28)	64602.0	NM_001047604	73668.0	Mm.250868	NM_001047604	ENSMUSG00000034848	Ttc21b	2410066K11Rik|Thm1|aln|mKIAA1992	tetratricopeptide repeat domain 21B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41031305-2	chr19	41031205	41031405	+	637.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001043228, intron 1 of 10)	intron (NM_001043228, intron 1 of 10)	2030.0	NM_009345	21673.0	Mm.25620	NM_009345	ENSMUSG00000025014	Dntt	Tdt	deoxynucleotidyltransferase, terminal	protein-coding	1.55618517413835	1.11920928780987	1.95182890799971	2.18835623532498	1.56877842607503	1.12423056119635	1.96799002869273	2.359578642563	0.203392090586058	0.858782990668963	0.998431161219273
Merged-chr9-63983706-2	chr9	63983606	63983806	+	588.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008542, intron 3 of 3)	intron (NM_008542, intron 3 of 3)	38353.0	NM_008542	17130.0	Mm.325757	NM_008542	ENSMUSG00000036867	Smad6	Madh6|b2b390Clo	SMAD family member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45741406-4	chr7	45741269	45741469	+	961.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360784, intron 1 of 5)	MTD|LTR|ERVL-MaLR	1109.0	NM_001360784	54200.0	Mm.271634	NM_017465	ENSMUSG00000003271	Sult2b1	AI326997|BB173635|ST2B1|SULT2B	sulfotransferase family, cytosolic, 2B, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-17774991-4	chr12	17774902	17775102	+	899.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361645, intron 2 of 4)	intron (NM_001361645, intron 2 of 4)	84193.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-8001441-2	chr14	8001341	8001541	+	781.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1447.0	NM_025341	66082.0	Mm.181473	NM_025341	ENSMUSG00000025277	Abhd6	0610041D24Rik|AA673485|AV065425	abhydrolase domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-95160314-3	chr4	95160201	95160401	+	914.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-108079.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-83538365-4	chr9	83538277	83538477	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-9961.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	5.69714020107577	6.4103414024638	6.2263805685342	5.88482380782245	5.75467821864962	5.95639371677837	5.49387832670117	5.90922076131988	-0.315504762984105	0.210348530714573	0.69949048545273
Merged-chr2-124720442-1	chr2	124720342	124720542	+	660.0	f0_balb.idr	Intergenic	Intergenic	66861.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-20059076-4	chr10	20058993	20059193	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008580, intron 10 of 29)	intron (NM_008580, intron 10 of 29)	-89827.0	NM_008635	17761.0	Mm.20928	NM_008635	ENSMUSG00000019996	Map7	E-MAP-115|MAP-7|Mtap7|R75000|mshi|mste|ste	microtubule-associated protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5668625-3	chr17	5668523	5668723	+	830.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 2 of 8)	intron (NM_146073, intron 2 of 8)	-130034.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-13549974-1	chr13	13549874	13550074	+	738.0	f0_balb.idr	Intergenic	RLTR26B_MM|LTR|ERVK	-40435.0	NM_010748	17101.0	Mm.342337	NM_010748	ENSMUSG00000019726	Lyst	D13Sfk13|beige|bg	lysosomal trafficking regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-157412060-2	chr1	157411960	157412160	+	995.8333130000001	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027984)	promoter-TSS (NR_027984)	-292.0	NR_027984	69953.0	Mm.286863	NM_027274	ENSMUSG00000049881	2810025M15Rik	AI429618	RIKEN cDNA 2810025M15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-145553434-3	chr6	145553345	145553545	+	745.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62518.0	NM_009449	22147.0	Mm.270295	NM_009449	ENSMUSG00000067338	Tuba3b	M[a]7|Tuba7	tubulin, alpha 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53127783-4	chr4	53127708	53127908	+	966.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 4 of 49)	intron (NM_013454, intron 4 of 49)	32087.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-105698389-1	chr5	105698289	105698489	+	596.0	f1_balb.idr	Intergenic	ID_B1|SINE|B4	-1580.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	1.29878012180674	2.05447102981644	0.847526979784122	0.833736314992325	1.73006764505338	1.48694788194423	1.69286591218675	0.83616692973327	0.341694473693587	0.804487620488685	0.998431161219273
Merged-chr9-24499103-2	chr9	24499003	24499203	+	565.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359948, intron 1 of 22)	(CA)n|Simple_repeat|Simple_repeat	4037.0	NM_001359948	244745.0	Mm.38526	NM_172920	ENSMUSG00000043067	Dpy19l1	1100001I19Rik|6030402K12|AI225861|AW558481	dpy-19-like 1 (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-12709250-3	chr2	12709132	12709332	+	676.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-214809.0	NM_008961	19212.0	Mm.229322	NM_008961	ENSMUSG00000026730	Pter	AI790318|Mpr56-1	phosphotriesterase related	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31496263-4	chr14	31496137	31496337	+	959.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028932, intron 1 of 5)	intron (NM_028932, intron 1 of 5)	1158.0	NM_028932	74427.0	Mm.491208	NM_028932	ENSMUSG00000021890	Eaf1	4933403C17Rik|AI666536	ELL associated factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-101895974-1	chr14	101895874	101896074	+	545.0	f1_c57bl6.idr	intron (NM_001347628, intron 8 of 26)	intron (NM_001347628, intron 8 of 26)	55351.0	NM_001347628	380928.0	Mm.218981	NM_201529	ENSMUSG00000033060	Lmo7	C78582|FBXO20|Gm914|mKIAA0858	LIM domain only 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-173743245-3	chr1	173743179	173743379	+	724.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-1470.0	NM_001204910	226691.0	Mm.440876	NM_001204910	ENSMUSG00000073490	Ifi207	AI607873|Pyhin-A|pyhinA	interferon activated gene 207	protein-coding	3.23054080698008	3.13519929711057	3.83314205482158	3.23778951364104	2.91400467617975	3.85721597262958	3.35615547677547	3.06441375331086	-0.077906218751996	0.893281352140409	0.998431161219273
Merged-chr12-111459509-2	chr12	111459409	111459609	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16848.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-155562937-4	chr4	155562842	155563042	+	981.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159637)	promoter-TSS (NM_001159637)	561.0	NM_138671	192185.0	Mm.28347	NM_138671	ENSMUSG00000029063	Nadk	4432404C02Rik|BC004012	NAD kinase	protein-coding	2.24861104991433	1.83057976809277	2.4380703795662	2.83217966479363	2.06503775547122	1.84294491374346	1.58496421076336	2.27997605465684	-1.02986395380793	0.253730620142208	0.751694505775946
Merged-chr10-100490962-3	chr10	100490868	100491068	+	677.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146009, intron 4 of 52)	intron (NM_146009, intron 4 of 52)	2679.0	NM_146009	216274.0	Mm.229114	NM_146009	ENSMUSG00000019971	Cep290	BC004690|Nphp6|b2b1454Clo|b2b1752Clo	centrosomal protein 290	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-44724569-3	chr18	44724461	44724661	+	942.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001085373, exon 3 of 19)	exon (NM_001085373, exon 3 of 19)	-62295.0	NM_001085374	328949.0	Mm.312511	NM_001033406	ENSMUSG00000071856	Mcc	D18Ertd451e|E330037C19	mutated in colorectal cancers	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-78219356-4	chr12	78219208	78219408	+	985.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7347.0	NM_172952	268566.0	Mm.341742	NM_145965	ENSMUSG00000047454	Gphn	5730552E08Rik|AI662856|BC027112|C230040D23|GPH|GPHRYN|geph	gephyrin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171614159-4	chr1	171614070	171614270	+	802.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6760.0	NM_001277968	17085.0	Mm.560	NM_008534	ENSMUSG00000004707	Ly9	AI893573|CD229|Lgp100|Ly-9|SLAMF3|T100	lymphocyte antigen 9	protein-coding	-1.0844890852994	-1.20094609029885	-1.21133883269339	-1.21987574073143	-1.22630776988587	-1.03516865625207	-1.2089861436177	-0.916460973355061	1.39538913500184	0.651522581918235	1
Merged-chr1-173880321-4	chr1	173880250	173880450	+	993.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001170853)	promoter-TSS (NM_001170853)	-163.0	NM_001170853	100040462.0	Mm.463437	NM_001170853	ENSMUSG00000090272	Mndal	Gm2785|Ifi212	myeloid nuclear differentiation antigen like	protein-coding	2.61386625285899	3.15419692875357	3.03239731154368	3.48314293162043	4.60769354031432	5.12193190004879	4.94365636746604	4.29256275931941	2.2925729422442	1.38296789786916e-06	8.52554586688984e-05
Merged-chr10-115312415-4	chr10	115312332	115312532	+	965.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024454, intron 1 of 6)	intron (NM_024454, intron 1 of 6)	3159.0	NM_024454	216344.0	Mm.21936	NM_024454	ENSMUSG00000020132	Rab21	9630024B22	RAB21, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36754375-3	chr1	36754221	36754421	+	839.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040290, intron 8 of 8)	ORR1C1|LTR|ERVL-MaLR	-7477.0	NM_009539	22637.0	Mm.8038	NM_009539	ENSMUSG00000026117	Zap70	Srk|ZAP-70|mrtle|mur	zeta-chain (TCR) associated protein kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129895552-4	chr2	129895458	129895658	+	913.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-94099.0	NR_029452	654409.0	Mm.305555	NR_029452		Stk35os1	4932416H05Rik	serine/threonine kinase 35, opposite strand 1	ncRNA	1.29917403910486	1.4616565775254	2.12704922483439	1.10801146510194	2.84256834997936	2.85489177730034	2.67289345080996	1.37793114194957	2.43392383298323	0.0195105554595326	0.176714376751489
Merged-chr1-184034824-2	chr1	184034724	184034924	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028516)	promoter-TSS (NM_028516)	443.0	NM_022019	63953.0	Mm.404024	NM_022019	ENSMUSG00000039384	Dusp10	2610306G15Rik|AI158871|MKP-5|MKP5	dual specificity phosphatase 10	protein-coding	0.389935618230908	0.335981878069623	0.695673642864068	0.13831340855507	0.132178266061872	0.149568755362523	0.706671508583206	0.300770829947481	-0.404639440862335	0.833094652680369	1
Merged-chr7-141428614-3	chr7	141428516	141428716	+	752.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021316, intron 1 of 1)	intron (NM_021316, intron 1 of 1)	946.0	NM_001360485	57754.0	Mm.87027	NM_021316	ENSMUSG00000060240	Cend1	1500001H12Rik|AI415214|BM88	cell cycle exit and neuronal differentiation 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-52007595-2	chr3	52007495	52007695	+	871.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	97411.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-151285304-4	chr1	151285207	151285407	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59179.0	NM_001359262	117198.0	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-6200198-4	chr11	6200084	6200284	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_173748, exon 1 of 6)	5' UTR (NM_173748, exon 1 of 6)	267.0	NM_173748	209586.0	Mm.25321	NM_173748	ENSMUSG00000053838	Nudcd3	AI427847|BC024322|mKIAA1068	NudC domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-80262158-2	chr13	80262058	80262258	+	609.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MMERGLN-int|LTR|ERV1	-621226.0	NR_153410	105171.0	Mm.423137	NM_001042591	ENSMUSG00000074794	Arrdc3	AI450344|mKIAA1376	arrestin domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88649523-4	chr3	88649395	88649595	+	939.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3647.0	NM_181817	242093.0	Mm.269130	NM_181817	ENSMUSG00000049741	Rxfp4	GPCR142|Gpr100|Rln3r2|SALPR	relaxin family peptide receptor 4	protein-coding	3.81604115876603	4.30723094153649	3.3791125556277	3.46446076476678	4.09184244452169	4.09764780492856	2.92168413901178	4.08430489941149	0.134756499651781	0.795673901503158	0.998431161219273
Merged-chr3-146464970-2	chr3	146464843	146465043	+	675.5	f0_balb.idr|f1_balb.idr	3' UTR (NM_001293672, exon 7 of 7)	3' UTR (NM_001293672, exon 7 of 7)	14476.0	NM_001293672	74245.0	Mm.45396	NM_028836	ENSMUSG00000028189	Ctbs	2210401K11Rik|CTB	chitobiase, di-N-acetyl-	protein-coding	0.381744000146832	0.612194530430954	0.142959228966535	0.64069362452965	0.388092151468128	0.334106041545947	0.144105360489833	0.13965596480061	-1.62927872579358	0.400436390378774	1
Merged-chr3-21917790-3	chr3	21917682	21917882	+	665.944458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-158870.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-127782335-2	chr1	127782235	127782435	+	640.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028399, intron 2 of 8)	L1MB2|LINE|L1	8171.0	NM_028399	72949.0	Mm.268672	NM_028399	ENSMUSG00000026349	Ccnt2	2900041I18Rik|C81304|CycT2|CycT2a|CycT2b	cyclin T2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123045999-2	chr5	123045899	123046099	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029112, intron 1 of 4)	intron (NM_029112, intron 1 of 4)	1017.0	NM_029112	74890.0	Mm.141383	NM_029112	ENSMUSG00000029477	Morn3	4930438O03Rik	MORN repeat containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-29632387-4	chr2	29632280	29632480	+	966.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054050, intron 1 of 23)	L1MB3|LINE|L1	12660.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-56729277-4	chr16	56729173	56729373	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172825, intron 15 of 15)	MTB|LTR|ERVL-MaLR	-11823.0	NM_001357126	21787.0	Mm.425970	NM_019678	ENSMUSG00000022757	Tfg	AI173908	Trk-fused gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-120135632-2	chr2	120135532	120135732	+	830.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133838, intron 2 of 5)	L1MA4A|LINE|L1	18943.0	NM_133838	98878.0	Mm.132226	NM_133838	ENSMUSG00000027293	Ehd4	2210022F10Rik|AI197390|AI846352|AV006278|Past2	EH-domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-77822974-2	chr11	77822874	77823074	+	746.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_011586, intron 10 of 39)	intron (NM_011586, intron 10 of 39)	21676.0	NM_001291215	360013.0	Mm.341248	NM_011586	ENSMUSG00000000631	Myo18a	MAJN|MyoPDZ|MysPDZ|SP-R210	myosin XVIIIA	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-103742652-2	chr13	103742552	103742752	+	747.25	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172592, exon 10 of 10)	3' UTR (NM_172592, exon 10 of 10)	21930.0	NM_172592	218543.0	Mm.458176	NM_172592	ENSMUSG00000032621	Srek1	8430401B01|AI450757|AI462342|SRrp508|SRrp86|Sfrs12|Srsf12	splicing regulatory glutamine/lysine-rich protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-103019259-4	chr2	103019133	103019333	+	963.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54280.0	NM_175094	27402.0	Mm.315011	NM_175094	ENSMUSG00000010914	Pdhx	AI481367|E3bp|Pdx1	pyruvate dehydrogenase complex, component X	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-142845414-1	chr6	142845314	142845514	+	543.0	f1_balb.idr	intron (NM_011374, intron 4 of 4)	intron (NM_011374, intron 4 of 4)	31183.0	NR_045707	665037.0	Mm.401493	NR_045707	ENSMUSG00000072683	Gm7457	EG665037	predicted gene 7457	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95053186-3	chr3	95053087	95053287	+	731.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10573.0	NM_008951	19185.0	Mm.2261	NM_008951	ENSMUSG00000005625	Psmd4	Af1|Mcb1|angiocidin	proteasome (prosome, macropain) 26S subunit, non-ATPase, 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-44104600-4	chr19	44104506	44104706	+	974.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162410, intron 1 of 20)	intron (NM_001162410, intron 1 of 20)	2871.0	NM_007700	12675.0	Mm.3996	NM_007700	ENSMUSG00000025199	Chuk	AI256658|Chuk1|Fbx24|Fbxo24|IKBKA|IKK alpha|IKK1|Ikka|NFKBIKA	conserved helix-loop-helix ubiquitous kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-52287624-4	chr2	52287536	52287736	+	981.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010889, intron 36 of 156)	intron (NM_010889, intron 36 of 156)	-3366.0	NR_040620	78049.0	Mm.243883	NR_040620		4930573O16Rik	-	RIKEN cDNA 4930573O16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-46076672-4	chr11	46076561	46076761	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291890, intron 3 of 22)	ORR1D1|LTR|ERVL-MaLR	20677.0	NM_001291891	11492.0	Mm.89940	NM_009616	ENSMUSG00000011256	Adam19	AL024287|MADDAM|MTLNB|Mltnb	a disintegrin and metallopeptidase domain 19 (meltrin beta)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-29964529-2	chr2	29964429	29964629	+	859.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1031.0	NM_001177668	20740.0	Mm.204969	NM_001076554	ENSMUSG00000057738	Sptan1	2610027H02Rik|Spna-2|Spna2	spectrin alpha, non-erythrocytic 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-77372518-6	chr11	77372449	77372649	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291190, intron 1 of 13)	intron (NM_001291190, intron 1 of 13)	24269.0	NM_001291190	237860.0	Mm.440381	NM_177710	ENSMUSG00000037926	Ssh2	SSH-2|SSH-2L|mSSH-2L	slingshot protein phosphatase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41312555-2	chr19	41312457	41312657	+	674.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 8 of 16)	intron (NM_031376, intron 8 of 16)	-48553.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	-1.27480050717774	-0.604729833679879	-1.25573295904267	-1.26493563944758	-1.27428069156472	-1.24210192204986	-1.25319678955844	-1.26328836405502	-2.6632876257018	0.439827081912762	1
Merged-chr14-41013773-4	chr14	41013646	41013846	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001316735)	promoter-TSS (NM_001316735)	87.0	NM_001316734	70564.0	Mm.27227	NM_027464	ENSMUSG00000021792	Fam213a	5730469M10Rik|AU040822|Adrx|Pamm	family with sequence similarity 213, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-98923299-4	chr4	98923196	98923396	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146144)	promoter-TSS (NM_146144)	-514.0	NM_001301414	230484.0	Mm.371692	NM_146144	ENSMUSG00000028560	Usp1	-	ubiquitin specific peptidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10709018-2	chr19	10708918	10709118	+	580.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361959, intron 2 of 3)	B3A|SINE|B2	8250.0	NM_001361964	107305.0	Mm.19091	NM_181403	ENSMUSG00000048832	Vps37c	5730409F24Rik|AU042646	vacuolar protein sorting 37C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-8165487-2	chr2	8165387	8165587	+	720.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	-769289.0	NM_001110231	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-48548523-4	chr13	48548417	48548617	+	955.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-10245.0	NR_029725	387244.0		NR_029725	ENSMUSG00000065421	Mirlet7a-1	Let-7a|Mirnlet7a|Mirnlet7a-1|let-7a-1	microRNA let7a-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-77822016-3	chr18	77821911	77822111	+	965.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013831, intron 1 of 14)	intron (NM_013831, intron 1 of 14)	-25621.0	NR_152167	619308.0	Mm.490456	NM_001033812		F830208F22Rik	-	RIKEN cDNA F830208F22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-83465223-3	chr15	83465135	83465335	+	811.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159509)	promoter-TSS (NM_001159509)	-629.0	NM_001358643	23970.0	Mm.23978	NM_011862	ENSMUSG00000016664	Pacsin2	AI197433	protein kinase C and casein kinase substrate in neurons 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105397931-2	chr8	105397831	105398031	+	832.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301173, intron 2 of 15)	intron (NM_001301173, intron 2 of 15)	15571.0	NM_177791	279499.0	Mm.67628	NM_177791	ENSMUSG00000051648	Kctd19	4922504H04Rik	potassium channel tetramerisation domain containing 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125084594-4	chr6	125084500	125084700	+	962.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11381.0	NM_001346610	107932.0	Mm.333388	NM_145979	ENSMUSG00000063870	Chd4	9530019N15Rik|AA617397|BC005710|D6Ertd380e|Mi-2beta|mKIAA4075	chromodomain helicase DNA binding protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-35053930-2	chr9	35053830	35054030	+	868.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009178, intron 6 of 10)	intron (NM_009178, intron 6 of 10)	-62798.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-3006329-3	chr18	3006228	3006428	+	696.344421	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	117084.0	NM_001167539	100312476.0	Mm.480293	NM_001167539	ENSMUSG00000091539	Vmn1r238	-	vomeronasal 1 receptor, 238	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-55799051-4	chr16	55798947	55799147	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23091.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-147814703-4	chr4	147814603	147814803	+	994.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CAAAA)n|Simple_repeat|Simple_repeat	-4915.0	NM_001127189	100041677.0	Mm.327194	NM_001127189	ENSMUSG00000078495	Zfp984	Gm13157	zinc finger protein 984	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-38085684-2	chr16	38085584	38085784	+	1000.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033221, exon 1 of 1)	non-coding (NR_033221, exon 1 of 1)	-3317.0	NM_001347232	56637.0	Mm.394930	NM_019827	ENSMUSG00000022812	Gsk3b	7330414F15Rik|8430431H08Rik|C86142|GSK-3|GSK-3beta|GSK3	glycogen synthase kinase 3 beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-31542125-4	chr15	31542002	31542202	+	950.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11065.0	NM_172606	223455.0	Mm.272185	NM_172606	ENSMUSG00000039100	March6	3830408G03|F830029L24Rik|mKIAA0597	membrane-associated ring finger (C3HC4) 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-75165594-2	chr14	75165494	75165694	+	632.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008879, intron 1 of 16)	intron (NM_008879, intron 1 of 16)	29169.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106782260-2	chr11	106782160	106782360	+	561.833374	f1_balb.idr|f1_c57bl6.idr	TTS (NR_037224)	TTS (NR_037224)	499.0	NR_037224	100526469.0		NR_037224	ENSMUSG00000093273	Mir3064	mir-3064|mmu-mir-3064	microRNA 3064	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107553982-2	chr9	107553876	107554076	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019713)	promoter-TSS (NM_019713)	-607.0	NM_019713	56289.0	Mm.12091	NM_019713	ENSMUSG00000010067	Rassf1	123F2|AA536941|AU044980|NORE2A|RDA32|REH3P21|Rassf1A|Rassf1B|Rassf1C	Ras association (RalGDS/AF-6) domain family member 1	protein-coding	2.38992731053464	1.8110565077207	2.9185355440238	3.44914277201873	2.15690414768311	2.25878426293457	3.45703135403564	2.41239296971949	-0.175793371216536	0.829770887958086	0.998431161219273
Merged-chr9-116164176-4	chr9	116164066	116164266	+	939.2291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009371, intron 1 of 7)	intron (NM_009371, intron 1 of 7)	11197.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-43667228-4	chr17	43667119	43667319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018887)	promoter-TSS (NM_018887)	-5.0	NM_001357123	74011.0	Mm.288697	NM_028711	ENSMUSG00000023912	Slc25a27	3632410G24Rik|9430092A03Rik|D530043E16Rik|Ucp4	solute carrier family 25, member 27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99876550-2	chr7	99876450	99876650	+	742.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164258, intron 6 of 18)	intron (NM_001164258, intron 6 of 18)	17332.0	NM_001164258	446101.0	Mm.440757	NM_001164258	ENSMUSG00000035211	Xrra1	AI449753	X-ray radiation resistance associated 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-137473124-4	chr6	137473039	137473239	+	927.6416630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	46756.0	NM_001271589	13860.0	Mm.235346	NM_007945	ENSMUSG00000015766	Eps8	AW261790	epidermal growth factor receptor pathway substrate 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-28441926-2	chr15	28441833	28442033	+	650.208374	f1_balb.idr|f1_c57bl6.idr	intron (NM_133365, intron 70 of 78)	RLTR13B1|LTR|ERVK	238167.0	NM_133365	110082.0	Mm.248464	NM_133365	ENSMUSG00000022262	Dnah5	AU022615|Dnahc5|Mdnah5|b2b1134Clo|b2b1154Clo|b2b1537Clo|b2b1565Clo|b2b3491Clo|b2b601Clo|mKIAA1603	dynein, axonemal, heavy chain 5	protein-coding	-1.31349849087795	-1.28274354783242	-1.29349452597086	-1.3023256995151	-1.3130151546297	-1.28041376602105	-0.694015972326031	-1.30074492367298	2.57396649482007	0.456321314346772	1
Merged-chr19-29461438-4	chr19	29461324	29461524	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021396, intron 5 of 5)	MTC|LTR|ERVL-MaLR	50505.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-32395319-2	chr16	32395219	32395419	+	565.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C|LTR|ERVK	-5187.0	NM_001160402	277203.0	Mm.484240	NM_001160402	ENSMUSG00000079625	Tm4sf19	EG277203	transmembrane 4 L six family member 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-7077359-4	chr1	7077273	7077473	+	764.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11547.0	NM_183028	319263.0	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-74830833-4	chr11	74830718	74830918	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010813)	promoter-TSS (NM_010813)	-106.0	NM_010813	17428.0	Mm.3759	NM_010813	ENSMUSG00000000282	Mnt	Rox|bHLHd3	max binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-37735933-4	chr2	37735805	37736005	+	914.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4_|SINE|ID	-40344.0	NM_001163566	241324.0	Mm.392369	NM_001163566	ENSMUSG00000035403	Crb2	5930402A21|BC043114	crumbs family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-113636598-2	chr13	113636498	113636698	+	999.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18034.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-85623999-1	chr1	85623899	85624099	+	562.0	f1_balb.idr	intron (NM_001013817, intron 7 of 16)	RMER19C|LTR|ERVK	-20108.0	NM_175397	109032.0	Mm.335802	NM_030194	ENSMUSG00000070034	Sp110	5031415C07Rik|52kDa|5830484A20Rik|Ifi75|Ipr1	Sp110 nuclear body protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-33983745-4	chr1	33983653	33983853	+	876.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276764, intron 3 of 102)	Lx6|LINE|L1	-28072.0	NM_133833	13518.0	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-27041861-2	chr8	27041761	27041961	+	601.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_054057)	promoter-TSS (NM_054057)	-694.0	NM_001039078	114863.0	Mm.277501	NM_054057	ENSMUSG00000031485	Plpbp	1700024N20Rik|2200002F22Rik|Prosc	pyridoxal phosphate binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-132621712-2	chr7	132621612	132621812	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029609, intron 1 of 6)	intron (NM_029609, intron 1 of 6)	11069.0	NM_029609	76429.0	Mm.276721	NM_029609	ENSMUSG00000030946	Lhpp	2310007H09Rik	phospholysine phosphohistidine inorganic pyrophosphate phosphatase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-27313140-3	chr12	27313029	27313229	+	855.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29589.0	NM_009234	20666.0	Mm.41702	NM_009234	ENSMUSG00000063632	Sox11	1110038H03Rik|6230403H02Rik|AI836553|end1	SRY (sex determining region Y)-box 11	protein-coding	3.2468203658443	1.53487165605607	2.39987385853557	1.42590972707147	3.65494054811005	3.91539516640528	2.84375220201213	3.56603440442095	1.95586028249564	0.0139727850122833	0.1383213486612
Merged-chr10-121431196-2	chr10	121431096	121431296	+	559.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_138956, intron 1 of 4)	intron (NM_138956, intron 1 of 4)	45054.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35439508-3	chr17	35439407	35439607	+	987.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001201460, exon 2 of 7)	exon (NM_001201460, exon 2 of 7)	340.0	NM_001201460	110558.0	Mm.431282	NM_001201460		H2-Q9	H-2Q9|Ped|Qa-2|Qa-9|Qa9	histocompatibility 2, Q region locus 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-170228445-2	chr2	170228345	170228545	+	570.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-85770.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-82374674-4	chr8	82374555	82374755	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008357, intron 2 of 7)	intron (NM_008357, intron 2 of 7)	27931.0	NM_001254747	16168.0	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	4.99169295240721	5.60622931736281	4.48965739424857	5.90584644903952	5.58876141170792	5.38834739734642	4.78679757321366	5.62116217264618	0.0412024192696181	0.906280306782752	0.998431161219273
Merged-chr9-21716012-2	chr9	21715912	21716112	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F1|SINE|Alu	-7564.0	NM_001252658	16835.0	Mm.3213	NM_010700	ENSMUSG00000032193	Ldlr	Hlb301	low density lipoprotein receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-25217427-3	chr12	25217328	25217528	+	844.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	88254.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-109670405-2	chr4	109670305	109670505	+	758.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3649.0	NM_001301368	12580.0	Mm.1912	NM_007671	ENSMUSG00000028551	Cdkn2c	C77269|INK4c|p18|p18-INK4c|p18-INK6|p18INK4c	cyclin dependent kinase inhibitor 2C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-116603936-4	chr7	116603818	116604018	+	872.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19C|LTR|ERVK	99549.0	NM_001360375	53322.0	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101552954-1	chr7	101552854	101553054	+	549.0	f1_balb.idr	intron (NM_007490, intron 2 of 2)	intron (NM_007490, intron 2 of 2)	2848.0	NM_007490	11871.0	Mm.439746	NM_007490	ENSMUSG00000092517	Art2a-ps	ARTC2|Art2a|Ly92a|Rt-6|Rt6|Rt6-1	ADP-ribosyltransferase 2a, pseudogene	protein-coding	2.47877860066929	1.81397437814626	0.951741401564799	0.931527976608927	1.72625016799209	0.9825199682991	2.46910709921552	1.38201427153353	0.0939248692025641	0.941862160221668	0.998431161219273
Merged-chr7-66334293-2	chr7	66334178	66334378	+	746.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_146191, intron 3 of 33)	ORR1B2|LTR|ERVL-MaLR	47446.0	NR_106024	102465640.0		NR_106024	ENSMUSG00000098353	Mir7057	Gm27550|mmu-mir-7057	microRNA 7057	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-150600373-2	chr5	150600273	150600473	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001362416, exon 8 of 8)	3' UTR (NM_001362416, exon 8 of 8)	-5848.0	NM_133898	100637.0	Mm.279932	NM_133898	ENSMUSG00000041132	N4bp2l1	2410024N18Rik|AI428195|B230342M21Rik	NEDD4 binding protein 2-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-35035616-2	chr7	35035516	35035716	+	788.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008820, intron 12 of 14)	intron (NM_008820, intron 12 of 14)	20950.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-85974215-2	chr9	85974115	85974315	+	776.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	131363.0	NM_001164792	21983.0	Mm.20864	NM_011627	ENSMUSG00000035274	Tpbg	5T4|AW495680|WAIF1	trophoblast glycoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-8429979-3	chr12	8429854	8430054	+	919.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	70055.0	NM_007483	11852.0	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123715837-2	chr5	123715731	123715931	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027494, intron 3 of 13)	intron (NM_027494, intron 3 of 13)	5213.0	NM_027494	70650.0	Mm.279427	NM_027494	ENSMUSG00000029427	Zcchc8	5730565F05Rik	zinc finger, CCHC domain containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-21985920-4	chr6	21985814	21986014	+	880.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081351)	promoter-TSS (NM_001081351)	4.0	NM_001081351	214642.0	Mm.221404	NM_001081351	ENSMUSG00000062980	Cped1	6720481P07|A430107O13Rik|AI552584	cadherin-like and PC-esterase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-46569141-2	chr4	46569041	46569241	+	708.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164804, intron 1 of 11)	intron (NM_001164804, intron 1 of 11)	-2701.0	NM_178893	107684.0	Mm.416311	NM_178893	ENSMUSG00000028337	Coro2a	9030208C03Rik|AI563590|IR10	coronin, actin binding protein 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-60357207-1	chr13	60357107	60357307	+	655.0	f1_balb.idr	Intergenic	Intergenic	151736.0	NR_036449	100503759.0	Mm.38101	NM_177810	ENSMUSG00000050765	Gm5084	A030007L22|EG328264	predicted gene 5084	ncRNA	0.0682037709499873	0.284826891325622	-0.0577533586095128	-0.0613482918524723	0.477491777015546	-0.0520248256455315	0.385145341668763	-0.0607209154601182	1.25207801577252	0.565963288589993	1
Merged-chr11-117709405-2	chr11	117709305	117709505	+	630.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_198022, intron 3 of 21)	intron (NM_198022, intron 3 of 21)	55116.0	NM_198022	217351.0	Mm.40272	NM_198022	ENSMUSG00000025571	Tnrc6c	9930033H14Rik|mKIAA1582	trinucleotide repeat containing 6C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-32587204-2	chr6	32587108	32587308	+	809.266663	f1_balb.idr|f1_c57bl6.idr	intron (NM_175750, intron 1 of 31)	RLTR20A4|LTR|ERVK	984.0	NM_175750	243743.0	Mm.444029	NM_175750	ENSMUSG00000029765	Plxna4	9330117B14|Plxa4|mKIAA1550	plexin A4	protein-coding	-1.26687315729308	-1.51144556179868	-1.52074032698608	-1.52837532385482	-1.39377469321613	-1.50943134740853	-1.5186361958831	-1.52700866306571	-0.563662181339258	0.873093626595385	1
Merged-chr15-34443358-4	chr15	34443267	34443467	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028101)	promoter-TSS (NR_028101)	-91.0	NM_001163485	19946.0	Mm.358632	NM_009083	ENSMUSG00000058600	Rpl30	-	ribosomal protein L30	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-58983090-1	chr11	58982990	58983190	+	1000.0	f1_c57bl6.idr	intron (NM_053168, intron 3 of 5)	intron (NM_053168, intron 3 of 5)	4997.0	NM_053168	94091.0	Mm.248049	NM_053168	ENSMUSG00000020455	Trim11	-	tripartite motif-containing 11	protein-coding	1.50782464558487	1.89254301010348	2.29803802682061	3.00619102321592	0.909484887855481	1.0080921412117	1.97672728160391	0.950603473652958	-2.71698374106354	0.0240748768468023	0.203535542265229
Merged-chr4-55797453-4	chr4	55797358	55797558	+	960.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-264983.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-130697543-5	chr2	130697381	130697581	+	893.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081162)	promoter-TSS (NM_001081162)	38.0	NM_001081162	269356.0	Mm.441391	NM_001081162	ENSMUSG00000074796	Slc4a11	AI503023|BTR1|NaBC1	solute carrier family 4, sodium bicarbonate transporter-like, member 11	protein-coding	2.46214659124362	1.72409130556607	2.33641298963254	1.19925835380954	2.48318723588907	1.25621345579922	2.24994229547783	2.06567774298171	0.144878584461822	0.892226959665521	0.998431161219273
Merged-chr10-61382229-5	chr10	61382221	61382421	+	792.084473	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013753, intron 1 of 19)	intron (NM_013753, intron 1 of 19)	1202.0	NM_013753	27355.0	Mm.269699	NM_013753	ENSMUSG00000020092	Pald1	MMPAL|Pald|mKIAA1274	phosphatase domain containing, paladin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124454942-2	chr5	124454842	124455042	+	591.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310725, intron 4 of 6)	intron (NM_001310725, intron 4 of 6)	8238.0	NM_001310727	67956.0	Mm.137966	NM_030241	ENSMUSG00000049327	Kmt5a	2410195B05Rik|AA617402|AW536475|PR-SET7|PR/SET07|Setd8	lysine methyltransferase 5A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115139044-4	chr11	115138960	115139160	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163753, intron 1 of 8)	MLT1H|LTR|ERVL-MaLR	-5068.0	NM_145634	246746.0	Mm.277387	NM_145634	ENSMUSG00000047798	Cd300lf	CLIM1|CLM-1|CLM1|Digr2|F730004D16Rik|IREM1|IgSF13|LMIR3|Pigr3	CD300 molecule like family member F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-80641985-4	chr1	80641870	80642070	+	967.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175291, intron 2 of 55)	intron (NM_175291, intron 2 of 55)	23382.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150910733-2	chr4	150910633	150910833	+	891.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020569)	promoter-TSS (NM_020569)	-812.0	NM_020569	57320.0	Mm.277349	NM_020569	ENSMUSG00000028964	Park7	DJ-1|Dj1	Parkinson disease (autosomal recessive, early onset) 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75588807-2	chr11	75588707	75588907	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008850, intron 1 of 11)	intron (NM_008850, intron 1 of 11)	728.0	NM_008850	18738.0	Mm.3128	NM_008850	ENSMUSG00000017781	Pitpna	Pitpn|vb|vibrator	phosphatidylinositol transfer protein, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-83201152-4	chr8	83201050	83201250	+	882.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111304, intron 1 of 20)	(TTTTTA)n|Simple_repeat|Simple_repeat	35798.0	NM_027758	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	4.45857820014223	4.56357750710809	4.67857563991822	4.35333390549807	2.91162782179173	3.31376407122209	4.45451865687527	2.27233419180196	-1.40170443597553	0.00974905277106197	0.106970955072217
Merged-chr18-46526036-4	chr18	46525920	46526120	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173423)	promoter-TSS (NM_173423)	-49.0	NM_173423	240263.0	Mm.38249	NM_173423	ENSMUSG00000033319	Fem1c	2610312A07Rik|3632443A22Rik|AI646567	fem-1 homolog c (C.elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-122454192-4	chr2	122454105	122454305	+	853.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356532, intron 10 of 17)	intron (NM_001356532, intron 10 of 17)	13385.0	NM_001356532	269346.0	Mm.29510	NM_172980	ENSMUSG00000027219	Slc28a2	2010208B10Rik|B430217P18|BB152493|Cnt2|SPNT	solute carrier family 28 (sodium-coupled nucleoside transporter), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-75488602-2	chr1	75488502	75488702	+	564.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_178884, exon 15 of 20)	exon (NM_178884, exon 15 of 20)	9070.0	NM_177056	319998.0	Mm.44401	NM_177056	ENSMUSG00000051703	Tmem198	A230078I05Rik|Tmem198-1|Tmem198a	transmembrane protein 198	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-40781394-4	chr9	40781305	40781505	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133733, intron 6 of 6)	intron (NM_133733, intron 6 of 6)	-19868.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	5.9302700158832	5.57606313604866	6.77665898280146	4.66467646540762	6.19066484055447	5.70241296085129	6.44681672392919	5.02851814857228	0.00389691740311494	0.994488905480515	0.998431161219273
Merged-chr1-12983365-4	chr1	12983244	12983444	+	987.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172841, intron 1 of 8)	intron (NM_172841, intron 1 of 8)	7791.0	NM_172841	240726.0	Mm.24481	NM_172841	ENSMUSG00000025938	Slco5a1	4732454B15|A630033C23Rik|AA407151	solute carrier organic anion transporter family, member 5A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-3201482-4	chr6	3201378	3201578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	SSU-rRNA_Hsa|rRNA|rRNA	-87041.0	NR_036696	667335.0	Mm.380219	NR_036696	ENSMUSG00000106779	Gm8579	EG667335	spermatogenesis associated glutamate (E)-rich protein 4a pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-120876103-2	chr14	120876003	120876203	+	913.583374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35091.0	NM_023579	70572.0	Mm.221452	NM_023579	ENSMUSG00000030662	Ipo5	1110011C18Rik|5730478E03Rik|AA409333|C76941|IMB3|Kpnb3|Ranbp5|imp5	importin 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5953043-2	chr19	5952943	5953143	+	964.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164057, intron 7 of 17)	intron (NM_001164057, intron 7 of 17)	11163.0	NM_001164057	18969.0	Mm.209931	NM_008893	ENSMUSG00000024833	Pola2	AI573378	polymerase (DNA directed), alpha 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-102070651-4	chr5	102070541	102070741	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172882)	promoter-TSS (NM_172882)	-720.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-16560297-3	chr16	16560197	16560397	+	926.361084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_139232)	promoter-TSS (NM_139232)	-78.0	NM_139232	224014.0	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-36167893-4	chr15	36167813	36168013	+	820.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3029.0	NM_001081253	78803.0	Mm.26393	NM_175281	ENSMUSG00000048230	Fbxo43	4930533G20Rik|Emi2	F-box protein 43	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-54553578-2	chr14	54553478	54553678	+	711.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145462, intron 1 of 9)	intron (NM_145462, intron 1 of 9)	783.0	NM_145462	219072.0	Mm.202152	NM_145462	ENSMUSG00000022177	Haus4	9430093H08Rik|AU016300|D14Ertd500e	HAUS augmin-like complex, subunit 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84601646-3	chr8	84601557	84601757	+	669.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252060, intron 32 of 47)	intron (NM_001252060, intron 32 of 47)	61195.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	1.36049005921382	1.79913014369246	1.93406073844064	1.7797555257874	0.890508359876297	0.944645316999017	1.62673072519043	1.12167715947674	-2.03355910706433	0.109271785409086	0.518281641040431
Merged-chr9-59678505-2	chr9	59678405	59678605	+	558.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253883, intron 10 of 10)	intron (NM_001253883, intron 10 of 10)	22137.0	NM_011099	18746.0	Mm.326167	NM_011099	ENSMUSG00000032294	Pkm	AA414905|AL024370|AL024424|Pk-2|Pk-3|Pk3|Pkm2	pyruvate kinase, muscle	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-170934595-4	chr1	170934498	170934698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7015.0	NM_001160215	98752.0	Mm.1850	NM_145141	ENSMUSG00000038421	Fcrla	BB219290|FCRL|FCRL1|FREB|Fcrlm1|Fcrx|Freb1|mFREB|mFcrX	Fc receptor-like A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-189921906-1	chr1	189921806	189922006	+	1000.0	f1_balb.idr	intron (NM_026796, intron 1 of 11)	CpG	385.0	NM_026796	226830.0	Mm.156895	NM_026796	ENSMUSG00000026603	Smyd2	1110020E07Rik|4930402C15|KMT3C|Zmynd14	SET and MYND domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-66861912-3	chr8	66861806	66862006	+	908.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163564, intron 1 of 7)	intron (NM_001163564, intron 1 of 7)	1689.0	NM_001163564	234344.0	Mm.334561	NM_001163564	ENSMUSG00000014907	Naf1	Gm174	nuclear assembly factor 1 ribonucleoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-21779449-4	chr13	21779338	21779538	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_020034)	TTS (NM_020034)	1187.0	NM_020034	56702.0	Mm.221314	NM_020034	ENSMUSG00000058773	Hist1h1b	H1.5|H1B|H1f5|H1s-3	histone cluster 1, H1b	protein-coding	1.68317471950439	1.08140155716791	1.71267680382811	1.77348395368333	1.35518963258875	1.64978421485214	1.72600756808864	1.67362441350708	0.0333208210568043	0.976302683226407	0.998431161219273
Merged-chr11-4986857-4	chr11	4986765	4986965	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007454)	promoter-TSS (NM_007454)	41.0	NM_001355660	11764.0	Mm.274816	NM_007454	ENSMUSG00000009090	Ap1b1	Adtb1|b2b1660Clo	adaptor protein complex AP-1, beta 1 subunit	protein-coding	3.22452579255181	3.08478481920126	3.21247684006195	4.60690525129264	3.78408235402901	3.73689531957514	2.99904444757579	3.90878820469601	-0.0909365100268238	0.876826106693052	0.998431161219273
Merged-chr4-45890259-4	chr4	45890154	45890354	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198660)	promoter-TSS (NM_198660)	-49.0	NM_198660	381522.0	Mm.54220	NM_198660	ENSMUSG00000035539	Ccdc180	E230008N13Rik|Gm1025	coiled-coil domain containing 180	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-87649750-2	chr1	87649650	87649850	+	830.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110192, intron 2 of 26)	intron (NM_001110192, intron 2 of 26)	29438.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-25827764-2	chr17	25827664	25827864	+	558.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_173741, exon 7 of 9)	exon (NM_173741, exon 7 of 9)	-1279.0	NM_028101	72106.0	Mm.277599	NM_028101	ENSMUSG00000025736	Jmjd8	2610003J06Rik	jumonji domain containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119355923-2	chr11	119355835	119356035	+	943.0	f0_c57.idr|f1_balb.idr	promoter-TSS (NM_018822)	promoter-TSS (NM_018822)	378.0	NM_178743	268512.0	Mm.31869	NM_178743	ENSMUSG00000039908	Slc26a11	F630021I08Rik	solute carrier family 26, member 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-110890129-2	chr3	110890029	110890229	+	613.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3C|LINE|L1	-639130.0	NR_024139	99890.0	Mm.36115	NM_178891	ENSMUSG00000049300	Prmt6	AW124876|BB233495|Hrmt1l6	protein arginine N-methyltransferase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-8829895-4	chr16	8829790	8829990	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081400)	promoter-TSS (NM_001081400)	-210.0	NM_001081400	69053.0	Mm.390868	NM_001081400	ENSMUSG00000022507	1810013L24Rik	1110017P05Rik|3010002C02Rik|AA792997|AW124177|Gm19906|R74903	RIKEN cDNA 1810013L24 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-21509073-2	chr13	21508974	21509174	+	552.5	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-2550.0	NR_026798	100038371.0	Mm.133328	NR_026798		Zfp389	-	zinc finger protein 389	pseudo	2.1462642509559	2.5421586599081	1.64125526466116	3.04544529527519	2.27825557860661	2.28917198533486	1.65303983050031	3.06087553152254	-0.0515987668573406	0.953811608108144	0.998431161219273
Merged-chr15-43282726-4	chr15	43282626	43282826	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008388)	promoter-TSS (NM_008388)	10.0	NM_008388	16341.0	Mm.289992	NM_008388	ENSMUSG00000022336	Eif3e	48kDa|Eif3s6|Int6|eIF3-p46|eIF3-p48	eukaryotic translation initiation factor 3, subunit E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-4503295-2	chr2	4503195	4503395	+	994.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 5 of 23)	B3A|SINE|B2	-56459.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-31455654-3	chr6	31455553	31455753	+	815.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013791, intron 8 of 17)	intron (NM_013791, intron 8 of 17)	56825.0	NM_013791	27418.0	Mm.238038	NM_013791	ENSMUSG00000025609	Mkln1	A130067F06Rik|AU015903|BB154892	muskelin 1, intracellular mediator containing kelch motifs	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-99345491-4	chr5	99345340	99345540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-92513.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150799680-4	chr4	150799564	150799764	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54132.0	NM_001356323	74155.0	Mm.318841	NM_133753	ENSMUSG00000028967	Errfi1	1300002F13Rik|AI788755|Mig-6|Mig6|RALT	ERBB receptor feedback inhibitor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139365393-3	chr5	139365277	139365477	+	937.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028469, intron 2 of 4)	intron (NM_028469, intron 2 of 4)	4368.0	NR_029768	723898.0		NR_029768	ENSMUSG00000065593	Mir339	Mirn339|mir-339|mmu-mir-339	microRNA 339	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-11908676-2	chr6	11908576	11908776	+	599.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001362123, intron 1 of 15)	intron (NM_001362123, intron 1 of 15)	847.0	NM_001362123	75725.0	Mm.212411	NM_029404	ENSMUSG00000029629	Phf14	1110001C23Rik|4932409F11Rik|5730446A07Rik|AA623952|AV297001|mKIAA0783	PHD finger protein 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-117892019-4	chr4	117891902	117892102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026344)	promoter-TSS (NM_026344)	1.0	NM_026344	67728.0	Mm.13823	NM_026344	ENSMUSG00000028540	Dph2	9130020C19Rik|AI467389|Dph2l2	DPH2 homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99033665-4	chr15	99033550	99033750	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009448, intron 1 of 3)	(T)n|Simple_repeat|Simple_repeat	3759.0	NM_009448	22146.0	Mm.88212	NM_009448	ENSMUSG00000043091	Tuba1c	M[a]6|Tuba6	tubulin, alpha 1C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128130822-2	chr10	128130715	128130915	+	586.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_019711, exon 13 of 13)	3' UTR (NM_019711, exon 13 of 13)	38032.0	NM_054078	116848.0	Mm.252213	NM_054078	ENSMUSG00000040054	Baz2a	AA415431|C030005G16Rik|C78388|Tip5|Walp3|mKIAA0314	bromodomain adjacent to zinc finger domain, 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-21707687-2	chr13	21707587	21707787	+	633.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4684.0	NM_001011820	258067.0	Mm.453831	NM_001011820	ENSMUSG00000108674	Olfr1359	MOR256-35|MOR256-60	olfactory receptor 1359	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-58134023-4	chr18	58133906	58134106	+	831.700012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010181, intron 7 of 64)	L1MB8|LINE|L1	75920.0	NM_010181	14119.0	Mm.20271	NM_010181	ENSMUSG00000024598	Fbn2	BC063774|Fib-2|mKIAA4226|sne|sy	fibrillin 2	protein-coding	2.775826736488	2.81772774287653	2.91776891016386	2.29700631061328	2.20762761411654	3.50306187713007	2.06486429139231	2.43621401722907	-0.0117901077250933	0.988030645849764	0.998431161219273
Merged-chr17-34930591-2	chr17	34930491	34930691	+	681.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010893)	promoter-TSS (NM_010893)	-662.0	NM_010893	18010.0	Mm.8856	NM_010893	ENSMUSG00000007038	Neu1	AA407268|AA407316|Aglp|Apl|Bat-7|Bat7|G9|Map-2|Neu|Neu-1	neuraminidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-87277791-2	chr6	87277691	87277891	+	773.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_054041, intron 8 of 17)	intron (NM_054041, intron 8 of 17)	57984.0	NM_054041	69538.0	Mm.232525	NM_054041	ENSMUSG00000033420	Antxr1	2310008J16Rik|2810405N18Rik|Antrx1|Tem8	anthrax toxin receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-11532373-3	chr2	11532265	11532465	+	689.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177758, intron 1 of 14)	intron (NM_001177758, intron 1 of 14)	21564.0	NM_001177758	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-40371925-1	chr19	40371825	40372025	+	561.0	f0_balb.idr	intron (NM_001034962, intron 7 of 22)	intron (NM_001034962, intron 7 of 22)	30385.0	NM_001034964	20411.0	Mm.210815	NM_009166	ENSMUSG00000025006	Sorbs1	2310065E01Rik|9530001P15Rik|CAP|SH3P12|Sh3d5|mKIAA1296	sorbin and SH3 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-25532271-2	chr14	25532171	25532371	+	737.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 2 of 23)	intron (NM_183208, intron 2 of 23)	-2168.0	NR_037236	100526533.0		NR_037236	ENSMUSG00000093081	Mir3075	mir-3075|mmu-mir-3075	microRNA 3075	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100527210-3	chr11	100527154	100527354	+	949.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134037, intron 1 of 27)	CpG	746.0	NM_134037	104112.0	Mm.282039	NM_134037	ENSMUSG00000020917	Acly	A730098H14Rik|AW538652	ATP citrate lyase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-97904887-2	chr16	97904787	97904987	+	783.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_174847, intron 2 of 13)	intron (NM_174847, intron 2 of 13)	17746.0	NM_174847	207781.0	Mm.1465	NM_174847	ENSMUSG00000045975	C2cd2	5730563M15|5830404H04Rik|AI314146|AI449533|BF168443|ORF25|mKIAA4045	C2 calcium-dependent domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-147922365-4	chr4	147922273	147922473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011122, intron 10 of 18)	MER58B|DNA|hAT-Charlie	14403.0	NM_011122	18822.0	Mm.23951	NM_011122	ENSMUSG00000019055	Plod1	2410042F05Rik|AI854890|AV007929|Lh1|Plod	procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-38929279-2	chr2	38929179	38929379	+	713.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2701.0	NM_172854	241327.0	Mm.103491	NM_172854	ENSMUSG00000046618	Olfml2a	4932431K08Rik|mFLJ00237	olfactomedin-like 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-55973764-4	chr16	55973673	55973873	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173026)	promoter-TSS (NM_173026)	-31.0	NM_173026	271377.0	Mm.282814	NM_173026	ENSMUSG00000022601	Zbtb11	9230110G02Rik|ZNF-U69274	zinc finger and BTB domain containing 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-85333258-8	chr6	85333119	85333319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178639, intron 1 of 13)	CpG	203.0	NM_178639	94282.0	Mm.121485	NM_178639	ENSMUSG00000033720	Sfxn5	C230001H08Rik	sideroflexin 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-79594989-3	chr7	79594907	79595107	+	559.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019799, intron 9 of 10)	intron (NM_019799, intron 9 of 10)	22650.0	NM_019799	56315.0	Mm.10909	NM_019799	ENSMUSG00000030549	Rhcg	BB065800	Rhesus blood group-associated C glycoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55741745-4	chr19	55741650	55741850	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001331147)	promoter-TSS (NM_001331147)	-60.0	NM_001331147	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-98034048-2	chr5	98033948	98034148	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3086.0	NM_133738	71914.0	Mm.24842	NM_133738	ENSMUSG00000029338	Antxr2	2310046B19Rik|AW561899|CMG-2|CMG2|cI-35	anthrax toxin receptor 2	protein-coding	-2.18138529563533	-2.15523716995652	-2.1631445789866	-2.16963996020037	-2.05513010215571	-2.15352360143315	-2.16135451490766	-2.16847729006863	0.759018020146679	0.829933115115583	1
Merged-chr14-104005442-4	chr14	104005322	104005522	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045953, intron 1 of 2)	intron (NR_045953, intron 1 of 2)	21720.0	NR_045953	73877.0	Mm.399172	NR_045953	ENSMUSG00000115727	4930432J09Rik	-	RIKEN cDNA 4930432J09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-37008954-2	chr15	37008854	37009054	+	816.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1552.0	NM_026521	68036.0	Mm.371631	NM_026521	ENSMUSG00000062397	Zfp706	3110006P09Rik|AA793007|AW536850|C77232|Znf706	zinc finger protein 706	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-104726023-2	chr4	104725923	104726123	+	546.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_104385, intron 12 of 15)	intron (NR_104385, intron 12 of 15)	-40294.0	NM_133882	110382.0	Mm.87072	NM_133882	ENSMUSG00000029656	C8b	4930439B20Rik|AI595927	complement component 8, beta polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-79225089-4	chr11	79225000	79225200	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17924.0	NM_001042565	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-97947679-2	chr3	97947579	97947779	+	613.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033779, intron 1 of 1)	MIRb|SINE|MIR	17506.0	NM_001033779	433632.0	Mm.212421	NM_001033779		Gm5544	EG433632	predicted gene 5544	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-155046880-1	chr1	155046780	155046980	+	574.0	f1_c57bl6.idr	Intergenic	Intergenic	36384.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120511333-2	chr11	120511233	120511433	+	845.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-19394.0	NM_008101	14527.0	Mm.22329	NM_008101	ENSMUSG00000025127	Gcgr	GR	glucagon receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-4086938-4	chr6	4086855	4087055	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009748)	promoter-TSS (NM_009748)	-25.0	NM_009748	12068.0	Mm.286457	NM_009748	ENSMUSG00000032757	Bet1	AW555236|Bet-1	Bet1 golgi vesicular membrane trafficking protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-12920567-2	chr13	12920467	12920667	+	861.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	84763.0	NM_031191	18811.0	Mm.88796	NM_031191	ENSMUSG00000079092	Prl2c2	Ghd2|MRP-1|PLF-1|Plf|Plf1	prolactin family 2, subfamily c, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167843645-2	chr2	167843545	167843745	+	565.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-88682.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-18297613-2	chr14	18297513	18297713	+	698.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009455, intron 3 of 5)	Lx5c|LINE|L1	26477.0	NM_023526	69721.0	Mm.25648	NM_023526	ENSMUSG00000021772	Nkiras1	2400004O09Rik|KBRAS1|kappaB-Ras1	NFKB inhibitor interacting Ras-like protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191276672-1	chr1	191276572	191276772	+	580.0	f1_balb.idr	Intergenic	Intergenic	41446.0	NM_025424	66208.0	Mm.46444	NM_025424	ENSMUSG00000037499	Nenf	1110060M21Rik|SCIRP10|Spuf	neuron derived neurotrophic factor	protein-coding	-1.7024385483431	-1.81249224917775	-1.82134771053534	-1.82862185015837	-1.70038292649591	-1.81057323376012	-1.81934302819017	-1.82731978264371	0.0376840119903864	0.991491645451152	1
Merged-chr15-81917785-2	chr15	81917685	81917885	+	681.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030229, intron 4 of 5)	intron (NM_030229, intron 4 of 5)	8428.0	NM_030229	78929.0	Mm.215115	NM_030229	ENSMUSG00000022476	Polr3h	5031409G22Rik|RPC8	polymerase (RNA) III (DNA directed) polypeptide H	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-95853505-4	chr8	95853409	95853609	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172758)	promoter-TSS (NM_172758)	-18.0	NM_172758	234595.0	Mm.29267	NM_172758	ENSMUSG00000036534	Slc38a7	D430050E18	solute carrier family 38, member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132008846-4	chr4	132008759	132008959	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183428, intron 1 of 20)	B3A|SINE|B2	40219.0	NM_001128606	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-71873922-7	chr2	71873821	71874021	+	984.6904910000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360002)	promoter-TSS (NM_001360002)	697.0	NM_172665	228026.0	Mm.34411	NM_172665	ENSMUSG00000006494	Pdk1	B830012B01|D530020C15Rik	pyruvate dehydrogenase kinase, isoenzyme 1	protein-coding	2.22166176523956	2.17931096875167	1.62645273350364	1.0272590817796	2.02450100373308	1.32102468172574	1.47640695489192	1.25091890242057	-0.859475920525216	0.456818555653848	0.919264728457769
Merged-chr10-80179175-2	chr10	80179075	80179275	+	611.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007909)	promoter-TSS (NM_007909)	-307.0	NM_007909	13637.0	Mm.1478	NM_007909	ENSMUSG00000003070	Efna2	CEK7L|Elf1|Epl6|Eplg6|Lerk6	ephrin A2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4839390-4	chr19	4839291	4839491	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207268)	promoter-TSS (NM_207268)	25.0	NM_207268	399599.0	Mm.444704	NM_207268	ENSMUSG00000067872	Ccdc87	4931419P11Rik	coiled-coil domain containing 87	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-152400772-2	chr3	152400672	152400872	+	770.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001287139, intron 1 of 13)	intron (NM_001287139, intron 1 of 13)	4088.0	NM_001287139	108946.0	Mm.379292	NM_198416	ENSMUSG00000039068	Zzz3	3110065C23Rik|6430567E01Rik|AA408566|AI481057|AW556059|R75514	zinc finger, ZZ domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-120064795-3	chr9	120064675	120064875	+	840.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009987, intron 1 of 1)	intron (NM_009987, intron 1 of 1)	3521.0	NM_009987	13051.0	Mm.44065	NM_009987	ENSMUSG00000052336	Cx3cr1	-	chemokine (C-X3-C motif) receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105276492-2	chr8	105276387	105276587	+	546.5	f0_balb.idr|f1_balb.idr	promoter-TSS (NM_030152)	promoter-TSS (NM_030152)	40.0	NM_030152	78688.0	Mm.475715	NM_030152	ENSMUSG00000014776	Nol3	ARC|B430311C09Rik|MYC|NOP|Nop30	nucleolar protein 3 (apoptosis repressor with CARD domain)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106392001-4	chr11	106391892	106392092	+	996.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9211.0	NM_010494	15896.0	Mm.394	NM_010494	ENSMUSG00000001029	Icam2	CD102|Icam-2|Ly-60	intercellular adhesion molecule 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-86575022-1	chr4	86574922	86575122	+	696.0	f0_balb.idr	promoter-TSS (NM_178376)	promoter-TSS (NM_178376)	-651.0	NM_178376	68441.0	Mm.31178	NM_178376	ENSMUSG00000070934	Rraga	1300010C19Rik|AI255374|FIP-1|RAGA	Ras-related GTP binding A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-29194852-4	chr2	29194850	29195050	+	865.7261960000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001305805, exon 8 of 8)	exon (NM_001305805, exon 8 of 8)	53149.0	NM_001305805	171171.0	Mm.442448	NM_133500	ENSMUSG00000035513	Ntng2	2610016D08Rik|Lmnt2	netrin G2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128497532-2	chr10	128497432	128497632	+	771.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172259, intron 1 of 6)	intron (NM_172259, intron 1 of 6)	1153.0	NM_172259	216459.0	Mm.291688	NM_172259	ENSMUSG00000039824	Myl6b	5730437E04Rik|BC037527|MLC1SA	myosin, light polypeptide 6B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117295022-4	chr8	117294920	117295120	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	MTE2b|LTR|ERVL-MaLR	38001.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-89944068-2	chr16	89943968	89944168	+	549.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009384, intron 2 of 27)	intron (NM_009384, intron 2 of 27)	16759.0	NM_009384	21844.0	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-68127343-4	chr10	68127241	68127441	+	869.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023598, intron 6 of 9)	intron (NM_023598, intron 6 of 9)	147771.0	NM_001359319	170799.0	Mm.209844	NM_133244	ENSMUSG00000037846	Rtkn2	B130039D23Rik|Mbf|Plekhk1	rhotekin 2	protein-coding	1.40081884787116	1.41337323365942	2.41648642746902	1.62049511267372	2.09287358706564	1.21292945995432	0.930713626815523	0.91204614979213	-1.12065583171773	0.370820615483687	0.86390402807248
Merged-chr13-100453860-3	chr13	100453747	100453947	+	779.466675	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008670)	promoter-TSS (NM_008670)	-983.0	NM_008670	17940.0	Mm.6898	NM_008670	ENSMUSG00000021640	Naip1	AV364616|Birc1a|D13Lsd1|Naip|Naip-rs1	NLR family, apoptosis inhibitory protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-8463628-2	chr17	8463528	8463728	+	632.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29205.0	NM_009309	20997.0	Mm.913	NM_009309	ENSMUSG00000062327	T	Bra|D17Mit170|Low|Lr|T1|Tbxt|Tl2|Tl3|cou|me75	brachyury, T-box transcription factor T	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-81927978-3	chr12	81927862	81928062	+	964.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018814, intron 6 of 35)	intron (NM_018814, intron 6 of 35)	67932.0	NM_018814	54604.0	Mm.86584	NM_018814	ENSMUSG00000021140	Pcnx	2900024E21Rik|3526401J03Rik|AF096286|AI327143|AI413187|Pcnx1|Pcnxl1	pecanex homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-23924832-4	chr17	23924740	23924940	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	7382.0	NM_001077633	620253.0	Mm.390964	NM_001077633	ENSMUSG00000057417	Dcpp3	Dcpp-3|EG620253|SPT-3	demilune cell and parotid protein 3	protein-coding	2.47734578001116	3.56344742414455	3.5128098481278	2.94954896068213	2.49994956169577	3.78420479321186	2.43849021452642	1.48221968369957	-0.628386552800431	0.42940358634932	0.903645503218979
Merged-chr13-99185879-2	chr13	99185779	99185979	+	697.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001004149, intron 1 of 4)	intron (NM_001004149, intron 1 of 4)	1056.0	NM_001004149	238803.0	Mm.343207	NM_001004149	ENSMUSG00000050919	Zfp366	DC-SCRIPT|Znf366	zinc finger protein 366	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-72493534-2	chr8	72493466	72493666	+	828.625	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177766)	promoter-TSS (NM_177766)	-952.0	NM_177766	270066.0	Mm.291461	NM_177766	ENSMUSG00000019731	Slc35e1	6030458H05|AA408278	solute carrier family 35, member E1	protein-coding	0.479115779905646	0.16650669969636	0.162179105142728	0.703046672748002	0.486807294614556	0.483574371284496	0.163129395790066	0.159448966619467	-0.558401491149569	0.784009197260303	1
Merged-chr16-55822011-7	chr16	55821839	55822039	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001159394, exon 1 of 12)	exon (NM_001159394, exon 1 of 12)	199.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-23257121-4	chr8	23257046	23257246	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001042484)	promoter-TSS (NM_001042484)	-66.0	NM_001042484	57437.0	Mm.196269	NM_020585	ENSMUSG00000015341	Golga7	AB041568|C130038N16Rik|GCP16|GOLGA3AP1|HSPC041|R75586	golgi autoantigen, golgin subfamily a, 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-25874883-4	chr17	25874810	25875010	+	972.392822	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026686)	promoter-TSS (NM_026686)	-590.0	NM_026686	68347.0	Mm.35098	NM_026686	ENSMUSG00000025731	Mettl26	0610011F06Rik	methyltransferase like 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-73637931-3	chr5	73637858	73638058	+	867.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011890, intron 5 of 5)	intron (NM_011890, intron 5 of 5)	-5537.0	NM_153568	231296.0	Mm.168948	NM_153568	ENSMUSG00000067206	Lrrc66	-	leucine rich repeat containing 66	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95631063-4	chr3	95630949	95631149	+	853.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001026212)	TTS (NM_001026212)	6069.0	NM_001026212	56205.0	Mm.241365	NM_019561	ENSMUSG00000038619	Ensa	1700020C18Rik|2610007F17Rik|AI451924	endosulfine alpha	protein-coding	1.65022235482781	1.06706428916701	2.32633738989833	1.02406984302731	1.98075116469557	1.072339526098	2.1639140283724	2.1828207874289	0.741850905685691	0.547056964593969	0.957629043069512
Merged-chr10-79884690-2	chr10	79884590	79884790	+	730.166626	f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 3 of 4)	intron (NR_038088, intron 3 of 4)	-1622.0	NM_015779	50701.0	Mm.262194	NM_015779	ENSMUSG00000020125	Elane	Ela2|F430011M15Rik|NE	elastase, neutrophil expressed	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-109531797-2	chr12	109531697	109531897	+	656.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9199.0	NR_027652	17263.0	Mm.289645	NM_144513	ENSMUSG00000021268	Meg3	2900016C05Rik|3110050O07Rik|6330408G06Rik|AI425946|AW108224|D12Bwg1266e|Gtl2|R74756|R75394	maternally expressed 3	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-11500755-4	chr2	11500661	11500861	+	889.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177758, intron 1 of 14)	intron (NM_001177758, intron 1 of 14)	1329.0	NM_001177754	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131394680-3	chr1	131394570	131394770	+	949.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081011, intron 4 of 22)	intron (NM_001081011, intron 4 of 22)	-115107.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-110381773-3	chr7	110381671	110381871	+	956.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177324, intron 17 of 40)	intron (NM_177324, intron 17 of 40)	160068.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-148540081-2	chr5	148539981	148540181	+	589.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359199, intron 3 of 6)	intron (NM_001359199, intron 3 of 6)	11592.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115631161-4	chr11	115631062	115631262	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2867.0	NM_001252395	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-32459439-3	chr12	32459318	32459518	+	761.194458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	80629.0	NM_001162903	72123.0	Mm.341352	NM_028111	ENSMUSG00000090946	Ccdc71l	2010109K11Rik|AV375874	coiled-coil domain containing 71 like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-116119465-2	chr3	116119365	116119565	+	736.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_011693, intron 5 of 8)	intron (NM_011693, intron 5 of 8)	10223.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	3.06178133899362	2.79139190578374	3.38421065931338	3.05247476441189	3.08633981103235	2.81114269950433	3.40869580045053	3.06772510689474	0.0379128593550145	0.950639804588159	0.998431161219273
Merged-chr7-143474487-2	chr7	143474387	143474587	+	550.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001042760)	promoter-TSS (NM_001042760)	-629.0	NM_001042760	18400.0	Mm.271740	NM_008767	ENSMUSG00000000154	Slc22a18	AW260131|BWR1A|BWSCR1A|HET|ITM|Impt1|Orctl2|Slc22a1l|TSSC5|p45-BWR1A	solute carrier family 22 (organic cation transporter), member 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-118549799-4	chr2	118549704	118549904	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138313)	promoter-TSS (NM_138313)	-118.0	NM_138313	171543.0	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171686695-4	chr1	171686590	171686790	+	855.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007649, intron 1 of 3)	intron (NM_007649, intron 1 of 3)	4698.0	NM_001360767	12506.0	Mm.1738	NM_007649	ENSMUSG00000015355	Cd48	AI449234|AW610730|BCM1|BLAST|BLAST-1|BLAST1|Bcm-1|MEM-102|SLAMF2|Sgp-60	CD48 antigen	protein-coding	-0.885343988398316	-0.873197811915141	-0.879568534556306	-0.464008891048743	-0.884809499207366	-0.870535133016439	-0.878945546113603	-0.458408536970068	0.0285539633070526	0.992673327504828	1
Merged-chr18-10608885-1	chr18	10608785	10608985	+	596.0	f1_c57bl6.idr	intron (NM_001081222, intron 1 of 10)	RSINE1|SINE|B4	1467.0	NM_001081222	77805.0	Mm.210996	NM_144542	ENSMUSG00000024293	Esco1	A930014I12Rik	establishment of sister chromatid cohesion N-acetyltransferase 1	protein-coding	-2.18375600819439	-2.15556918946382	-2.16409311609999	-2.17109492323169	-2.18177734563694	-2.01960173909294	-2.16216348594872	-2.16984160310277	0.759018020146679	0.829933115115583	1
Merged-chr4-103123233-4	chr4	103123141	103123341	+	939.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039081, intron 1 of 12)	intron (NM_001039081, intron 1 of 12)	3851.0	NM_001039081	71148.0	Mm.288721	NM_027696	ENSMUSG00000028522	Mier1	4933425I22Rik|5830411K19Rik|er1	MEIR1 treanscription regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-49869994-1	chr11	49869894	49870094	+	621.0	f0_c57.idr	intron (NM_016961, intron 5 of 11)	intron (NM_016961, intron 5 of 11)	23243.0	NM_016961	26420.0	Mm.68933	NM_016961	ENSMUSG00000020366	Mapk9	AI851083|JNK2|Prkm9|p54aSAPK	mitogen-activated protein kinase 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-99085503-2	chr10	99085403	99085603	+	802.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21579.0	NM_027740	382406.0	Mm.440656	NM_027740	ENSMUSG00000019952	Poc1b	4933430F16Rik|Wdr51b	POC1 centriolar protein B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-97768428-2	chr15	97768328	97768528	+	712.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144850)	promoter-TSS (NM_144850)	-762.0	NM_001357630	223864.0	Mm.24028	NM_144850	ENSMUSG00000022469	Rapgef3	2310016P22Rik|9330170P05Rik|Epac|Epac1	Rap guanine nucleotide exchange factor (GEF) 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-153930515-2	chr1	153930415	153930615	+	665.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30586.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-24686955-1	chr1	24686855	24687055	+	594.0	f1_balb.idr	intron (NM_026719, intron 2 of 15)	intron (NM_026719, intron 2 of 15)	8037.0	NM_001310483	68421.0	Mm.336563	NM_026719	ENSMUSG00000073725	Lmbrd1	0910001K20Rik|AV347960	LMBR1 domain containing 1	protein-coding	1.45349503716926	0.703332338083854	0.692266659171296	1.01930710180401	1.20356023775337	0.705809803680856	1.43413775190328	1.27549823756695	0.714295938657974	0.636507490233972	0.982417279970648
Merged-chr10-127574887-2	chr10	127574787	127574987	+	935.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 26 of 88)	intron (NM_008512, intron 26 of 88)	-40328.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-95250328-2	chr11	95250228	95250428	+	568.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11201.0	NM_053093	93670.0	Mm.40085	NM_053093	ENSMUSG00000020872	Tac4	AW489379|PPT-C	tachykinin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80351970-2	chr10	80351912	80352112	+	554.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 1 of 4)	intron (NR_038088, intron 1 of 4)	-3564.0	NR_104340	66548.0	Mm.71891	NM_025629	ENSMUSG00000043822	Adamtsl5	2010109H09Rik|Thsd6	ADAMTS-like 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47672572-3	chr17	47672482	47672682	+	948.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_198421, exon 3 of 7)	exon (NM_198421, exon 3 of 7)	-15028.0	NR_045945	100415787.0	Mm.392206	NR_045945	ENSMUSG00000084880	Tomm6os	Gm14872|Prickle4os	translocase of outer mitochondrial membrane 6, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52603444-4	chr13	52603353	52603553	+	977.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011518, intron 1 of 13)	intron (NM_011518, intron 1 of 13)	6571.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-27677717-4	chr3	27677611	27677811	+	973.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173182, intron 1 of 25)	intron (NM_173182, intron 1 of 25)	32741.0	NM_001356953	72007.0	Mm.38832	NM_173182	ENSMUSG00000039286	Fndc3b	1600019O04Rik|AW550168|Fad104|mKIAA4164	fibronectin type III domain containing 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-6258656-4	chr2	6258563	6258763	+	963.395874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040333, intron 3 of 6)	intron (NR_040333, intron 3 of 6)	-45669.0	NM_024208	67856.0	Mm.38342	NM_024208	ENSMUSG00000039063	Echdc3	2310005D12Rik|AI662097	enoyl Coenzyme A hydratase domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-79083730-3	chr11	79083632	79083832	+	901.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013571, intron 1 of 17)	intron (NM_013571, intron 1 of 17)	-23896.0	NM_001348207	16706.0	Mm.4745	NM_013571	ENSMUSG00000018334	Ksr1	AW492498|B-KSR1|D11Bhm183e|D11Bhm184e|Ksr|RSU2|hb|mKSR1	kinase suppressor of ras 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-21749680-2	chr14	21749580	21749780	+	864.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026283)	promoter-TSS (NM_026283)	-851.0	NM_026283	67630.0	Mm.102765	NM_026283	ENSMUSG00000021770	Samd8	1110053F04Rik|1700010P07Rik|SMSr	sterile alpha motif domain containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-95582285-3	chr9	95582193	95582393	+	757.733337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22476.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-62190196-2	chr18	62190096	62190296	+	590.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10096.0	NM_001013754	225609.0	Mm.296917	NM_001013754	ENSMUSG00000054589	Gm9949	EG225609	predicted gene 9949	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-40814228-4	chr9	40814121	40814321	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12948.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	5.5472339904634	5.26216232501733	5.72348446637921	5.7880598415559	4.8817304531439	6.03432076875011	4.80145993956006	5.32601116881983	-0.29019317780953	0.367906347499801	0.862698441166634
Merged-chr5-117133583-4	chr5	117133503	117133703	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183306)	promoter-TSS (NM_183306)	15.0	NM_183306	330177.0	Mm.24343	NM_183306	ENSMUSG00000061288	Taok3	2900006A08Rik|A130052D22|A430105I05Rik	TAO kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-88826806-4	chr10	88826702	88826902	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175158)	promoter-TSS (NM_175158)	12.0	NM_175158	70683.0	Mm.29631	NM_175158	ENSMUSG00000004356	Utp20	3830408P06Rik|AA617408|Drim|mDRIM|mDRIN	UTP20 small subunit processome component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-32192241-4	chr5	32192150	32192350	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40458.0	NM_030072	665270.0	Mm.160067	NM_030072	ENSMUSG00000029134	Plb1	4632413E21Rik|4930433E17Rik|4930539A06Rik|BC033606	phospholipase B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-134853972-4	chr4	134853864	134854064	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355501)	promoter-TSS (NM_001355501)	-619.0	NM_025382	66146.0	Mm.99793	NM_025382	ENSMUSG00000028826	Tmem57	1110007C24Rik|9230118A01Rik|AI317300|AI606104|C61|Maco1	transmembrane protein 57	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165062230-4	chr2	165062136	165062336	+	948.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027852, intron 1 of 7)	intron (NR_027852, intron 1 of 7)	6600.0	NM_011611	21939.0	Mm.271833	NM_011611	ENSMUSG00000017652	Cd40	AI326936|Bp50|GP39|HIGM1|IGM|IMD3|T-BAM|TRAP|Tnfrsf5|p50	CD40 antigen	protein-coding	2.40718107798295	3.26790708297707	2.72318325223928	3.0751524333295	2.79808152794695	2.28054233564012	1.80157943261618	2.66033635820737	-0.90075773590995	0.235857833124697	0.732608460950152
Merged-chr3-144701925-3	chr3	144701812	144702012	+	641.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001282037, intron 5 of 10)	intron (NM_001282037, intron 5 of 10)	18423.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-60398620-4	chr10	60398522	60398722	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252635, intron 28 of 68)	intron (NM_001252635, intron 28 of 68)	-1104.0	NM_001164374	100302688.0	Mm.444135	NM_001164374	ENSMUSG00000090439	Gm17455	-	predicted gene, 17455	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-139296866-3	chr4	139296787	139296987	+	883.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151463, intron 9 of 10)	intron (NR_151463, intron 9 of 10)	13821.0	NR_151463	212555.0	Mm.45131	NM_145384	ENSMUSG00000028744	Pqlc2	BC019216	PQ loop repeat containing 2	protein-coding	3.83205749265703	2.3454229211233	3.43562590851556	3.81540241955954	3.65919794833704	3.17292967882487	2.80449463979957	3.94155824628796	-0.0202968861287587	0.973629448650322	0.998431161219273
Merged-chr8-122436812-4	chr8	122436792	122436992	+	921.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028354, intron 8 of 10)	intron (NR_028354, intron 8 of 10)	-3952.0	NM_007806	13057.0	Mm.271671	NM_007806	ENSMUSG00000006519	Cyba	b558|nmf333|p22-phox|p22phox	cytochrome b-245, alpha polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134984216-1	chr6	134984116	134984316	+	564.0	f1_c57bl6.idr	exon (NM_001109914, exon 2 of 2)	exon (NM_001109914, exon 2 of 2)	2215.0	NM_001109914	381823.0	Mm.296104	NM_001109914	ENSMUSG00000090698	Apold1	Gm1075	apolipoprotein L domain containing 1	protein-coding	2.3877451712525	2.93222385352578	3.54595470019715	2.75425509913784	2.40791508655269	2.83470071666099	3.30679769509591	2.65592333454615	-0.243950529840567	0.727716215340162	0.998431161219273
Merged-chr12-111166930-2	chr12	111166830	111167030	+	987.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286122, intron 1 of 9)	CpG	560.0	NM_011632	22031.0	Mm.27431	NM_011632	ENSMUSG00000021277	Traf3	AI528849|CAP-1|CD40bp|CRAF1|LAP1|T-BAM|amn	TNF receptor-associated factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-125603003-2	chr7	125602903	125603103	+	595.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021887)	promoter-TSS (NM_021887)	-426.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-48046441-1	chr4	48046341	48046541	+	543.0	f0_c57.idr	intron (NM_015743, intron 1 of 7)	intron (NM_015743, intron 1 of 7)	1136.0	NM_015743	18124.0	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56298637-4	chr17	56298547	56298747	+	834.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029799, intron 1 of 2)	B2_Mm2|SINE|B2	1639.0	NM_029799	76920.0	Mm.329132	NM_029799	ENSMUSG00000073380	Arrdc5	1700013E09Rik	arrestin domain containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34117380-7	chr17	34117294	34117494	+	952.714294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001204973, intron 2 of 12)	B1_Mus1|SINE|Alu	2506.0	NR_037970	14312.0	Mm.3444	NM_010238	ENSMUSG00000024335	Brd2	AW228947|D17H6S113E|Frg-1|Fsrg-1|Fsrg1|Nat|Ring3|Rnf3|mKIAA4005	bromodomain containing 2	protein-coding	1.46815067979432	1.9165996194288	0.750694539449614	0.735990783102445	0.714549364323974	1.93406258285858	1.75246958179148	0.738586407649635	0.284947481436992	0.85043549665182	0.998431161219273
Merged-chr13-102849278-3	chr13	102849171	102849371	+	970.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175171, intron 5 of 28)	MLT1E3|LTR|ERVL-MaLR	89016.0	NR_130171	76624.0	Mm.426384	NR_130171	ENSMUSG00000091906	1700099I09Rik	-	RIKEN cDNA 1700099I09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-86690392-4	chr4	86690295	86690495	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20336.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	4.92076900503122	5.03324108374404	4.53760647189603	5.35997462534059	5.90785687092521	5.10962935050774	5.47040506103499	5.38329640699508	0.594944305491133	0.0605176077928384	0.363651214506749
Merged-chr18-53172026-2	chr18	53171926	53172126	+	780.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4266.0	NM_001357463	67804.0	Mm.252171	NM_026386	ENSMUSG00000034484	Snx2	0610030A03Rik	sorting nexin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-136982446-2	chr5	136982345	136982545	+	843.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310748, intron 5 of 5)	intron (NM_001310748, intron 5 of 5)	4459.0	NM_001310747	70103.0	Mm.273147	NM_027318	ENSMUSG00000059518	Znhit1	2700001K05Rik|ZNFN4A1	zinc finger, HIT domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3414482-4	chr19	3414375	3414575	+	957.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001329667)	promoter-TSS (NM_001329667)	69.0	NM_001329667	14419.0	Mm.4655	NM_010253	ENSMUSG00000024907	Gal	Galn	galanin	protein-coding	1.62273661133719	1.00028569008848	1.52147061347944	0.970660669664258	1.96875984808268	1.58686778524269	1.78258689956658	1.48648020494533	1.40714986609288	0.248669200372166	0.74758343357745
Merged-chr1-86372099-4	chr1	86371906	86372106	+	868.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12432.0	NR_015507	319336.0	Mm.389155	NR_015507	ENSMUSG00000073627	C130036L24Rik	-	RIKEN cDNA C130036L24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-32718078-4	chr6	32717975	32718175	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-129883.0	NM_175750	243743.0	Mm.444029	NM_175750	ENSMUSG00000029765	Plxna4	9330117B14|Plxa4|mKIAA1550	plexin A4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97883682-4	chr11	97883583	97883783	+	947.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081435, intron 1 of 10)	CpG	471.0	NM_001081435	72973.0	Mm.245939	NM_001081435	ENSMUSG00000070336	Fbxo47	2900052P03Rik|Gm1562	F-box protein 47	protein-coding	1.48322938772235	2.06952232445479	1.99834844580548	2.22729125034684	2.81856444586388	3.012026991708	1.61079590404532	2.89334360938675	1.60572443691819	0.0702317500881961	0.398668891361662
Merged-chr17-64616430-4	chr17	64616333	64616533	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008549, intron 1 of 21)	intron (NM_008549, intron 1 of 21)	14784.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-46016299-2	chr11	46016199	46016399	+	769.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_173384, intron 4 of 4)	intron (NM_173384, intron 4 of 4)	35989.0	NM_173384	214105.0	Mm.66708	NM_173384	ENSMUSG00000040489	Sox30	-	SRY (sex determining region Y)-box 30	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-25359007-2	chr2	25358909	25359109	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-2677.0	NM_031843	83768.0	Mm.21440	NM_031843	ENSMUSG00000026958	Dpp7	DPPII|Dpp2|QPP	dipeptidylpeptidase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-17383162-4	chr10	17383053	17383253	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-287371.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-15769082-2	chr3	15768981	15769181	+	792.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	79406.0	NM_001173459	100038947.0	Mm.330924	NM_001173459	ENSMUSG00000074677	LOC100038947	-	signal-regulatory protein beta 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-182935599-4	chr1	182935500	182935700	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19188.0	NM_016928	53791.0	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-33033299-4	chr17	33033175	33033375	+	964.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028543, intron 1 of 3)	intron (NM_028543, intron 1 of 3)	106.0	NM_028543	73451.0	Mm.129453	NM_028543	ENSMUSG00000067430	Zfp763	1700065O13Rik|AI839635	zinc finger protein 763	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-42260110-2	chr18	42260014	42260214	+	685.583374	f0_balb.idr|f1_c57bl6.idr	intron (NM_134137, intron 1 of 31)	intron (NM_134137, intron 1 of 31)	1957.0	NM_134137	107045.0	Mm.312170	NM_134137	ENSMUSG00000024493	Lars	2310045K21Rik|3110009L02Rik|AW536573|mKIAA1352	leucyl-tRNA synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-162546200-2	chr1	162546100	162546300	+	864.583374	f1_balb.idr|f1_c57bl6.idr	exon (NM_144877, exon 2 of 8)	exon (NM_144877, exon 2 of 8)	2145.0	NM_144877	71449.0	Mm.270569	NM_144877	ENSMUSG00000026694	Mettl13	5630401D24Rik	methyltransferase like 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114722606-2	chr11	114722506	114722706	+	809.716675	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4806.0	NM_001034878	432611.0	Mm.212764	NM_001034878	ENSMUSG00000034706	Dnaic2	C030015H18Rik|Dnai2|Gm728|b2b3405Clo	dynein, axonemal, intermediate chain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-66197342-2	chr7	66197242	66197442	+	935.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	87827.0	NM_001081163	269941.0	Mm.333916	NM_001081163	ENSMUSG00000032640	Chsy1	mKIAA0990	chondroitin sulfate synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-62847454-4	chr4	62847340	62847540	+	991.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-118134.0	NM_028326	72701.0	Mm.26479	NM_028326	ENSMUSG00000028358	Zfp618	2810031P15Rik|2810040O04Rik|AI415580|AI505139|D430033D05Rik|Nedd10|Znf618|bM257P7.1	zinc finger protein 618	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-61363797-4	chr3	61363706	61363906	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028712)	promoter-TSS (NM_028712)	-701.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-43871528-1	chr5	43871428	43871628	+	576.0	f1_c57bl6.idr	intron (NM_007646, intron 1 of 7)	RSINE1|SINE|B4	2719.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	2.39690298044839	2.27557403714066	2.51259143060456	2.24885107424722	2.49211682643361	1.3518739781601	1.56794563717359	2.02382118804932	-0.995301787188678	0.292851935870531	0.797431320709244
Merged-chr5-72881377-2	chr5	72881277	72881477	+	996.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12929.0	NM_001113460	21682.0	Mm.319581	NM_013689	ENSMUSG00000029217	Tec	-	tec protein tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-84829607-3	chr15	84829521	84829721	+	844.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356573, intron 2 of 12)	intron (NM_001356573, intron 2 of 12)	25478.0	NM_001356573	271305.0	Mm.101022	NM_001081166	ENSMUSG00000016624	Phf21b	A730032D07Rik	PHD finger protein 21B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-108527640-3	chr6	108527556	108527756	+	803.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 60 of 61)	intron (NM_010585, intron 60 of 61)	37913.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	0.0734816145646966	0.0890269888726413	0.25131295055595	0.483388549738788	0.331640927444654	0.0901808263802114	0.255895660556391	0.686176722212519	0.960677430145311	0.624742707397804	1
Merged-chr18-35750957-1	chr18	35750857	35751057	+	681.0	f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	-10403.0	NM_001289592	72512.0	Mm.45995	NM_028261	ENSMUSG00000024349	Tmem173	2610307O08Rik|ERIS|MPYS|Mita|STING	transmembrane protein 173	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118695545-2	chr9	118695445	118695645	+	800.299988	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 14 of 27)	MLT2D|LTR|ERVL	-16147.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-9893719-4	chr10	9893620	9893820	+	793.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081344, intron 2 of 25)	intron (NM_001081344, intron 2 of 25)	7320.0	NM_001081344	78808.0	Mm.331751	NM_030191	ENSMUSG00000019790	Stxbp5	0710001E20Rik|4930565N16Rik|AW742610|LGL3|mKIAA1006	syntaxin binding protein 5 (tomosyn)	protein-coding	1.66142944006917	1.00730596387754	0.590406880068785	0.581352183039498	0.74202328872323	0.604566886024767	1.25204846247077	1.2020077378157	-0.316187073057275	0.841446907487517	0.998431161219273
Merged-chr18-39246462-5	chr18	39246338	39246538	+	568.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361073, intron 16 of 21)	intron (NM_001361073, intron 16 of 21)	240807.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45459458-4	chr7	45459358	45459558	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010240, intron 1 of 3)	intron (NM_010240, intron 1 of 3)	428.0	NM_010240	14325.0	Mm.30357	NM_010240	ENSMUSG00000050708	Ftl1	Ftl|Ftl-1|L-ferritin	ferritin light polypeptide 1	protein-coding	1.71556378103773	2.26642465048457	2.74919945028299	2.8310147305664	1.30689218615004	2.42631614522295	2.67848270297024	2.59511108337665	-0.232512474914176	0.799340513105023	0.998431161219273
Merged-chr18-5603683-4	chr18	5603578	5603778	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360981, intron 2 of 8)	intron (NM_001360981, intron 2 of 8)	11031.0	NM_001360981	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-96624666-4	chr10	96624577	96624777	+	663.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7676.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119862089-2	chr11	119861989	119862189	+	868.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_028898, intron 20 of 33)	intron (NM_028898, intron 20 of 33)	-20200.0	NR_039557	100628577.0		NR_039557	ENSMUSG00000093061	Mir5098	mmu-mir-5098|mu-mir-5098	microRNA 5098	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-37432914-3	chr13	37432838	37433038	+	814.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	87593.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-92353757-4	chr5	92353673	92353873	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310664, intron 2 of 10)	intron (NM_001310664, intron 2 of 10)	-4884.0	NM_021274	15945.0	Mm.877	NM_021274	ENSMUSG00000034855	Cxcl10	C7|CRG-2|INP10|IP-10|IP10|Ifi10|Scyb10|gIP-10|mob-1	chemokine (C-X-C motif) ligand 10	protein-coding	3.23455282957593	2.87532414229144	4.01114574521774	2.82247362525959	3.18341994136606	3.99698207438932	3.05436478934743	3.57122239192212	0.260200497371508	0.665613437924637	0.992380258859526
Merged-chr7-141465273-2	chr7	141465173	141465373	+	661.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001025103, exon 7 of 10)	exon (NM_001025103, exon 7 of 10)	-1369.0	NR_152220	100126795.0	Mm.386851	NR_152219	ENSMUSG00000073787	Gm10575	-	predicted gene 10575	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133118307-4	chr4	133118211	133118411	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12322.0	NM_153423	242687.0	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	5.4459952283319	5.26708723184018	5.37862814192267	5.64111841261664	5.52657280211006	5.09930230602884	5.76387498536682	5.52076613768058	0.0668337456618004	0.808718417452042	0.998431161219273
Merged-chr1-36307705-4	chr1	36307586	36307786	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033310)	promoter-TSS (NR_033310)	-47.0	NM_001172206	214855.0	Mm.34316	NM_145996	ENSMUSG00000037447	Arid5a	D430024K22Rik|Mrf1	AT rich interactive domain 5A (MRF1-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-69156809-4	chr17	69156752	69156952	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_013813, exon 1 of 22)	5' UTR (NM_013813, exon 1 of 22)	108.0	NM_013813	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-24487076-4	chr14	24486984	24487184	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081247)	promoter-TSS (NM_001081247)	-26.0	NM_001081247	218832.0	Mm.343610	NM_183157	ENSMUSG00000025280	Polr3a	9330175N20Rik|BC053071|RPC1|RPC155	polymerase (RNA) III (DNA directed) polypeptide A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27324699-2	chr2	27324599	27324799	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_133905, intron 2 of 29)	intron (NR_133905, intron 2 of 29)	-77396.0	NM_138665	192166.0	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-58446731-2	chr13	58446631	58446831	+	990.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43388.0	NM_001301341	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45509867-3	chr7	45509713	45509913	+	945.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001163662, exon 2 of 13)	exon (NM_001163662, exon 2 of 13)	595.0	NM_008749	18220.0	Mm.258923	NM_008749	ENSMUSG00000030824	Nucb1	B230337F23Rik|C77483|Calnuc|MTEST82|Nucb	nucleobindin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-76657866-3	chr5	76657848	76658048	+	791.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	66234.0	NM_199032	381644.0	Mm.332452	NM_199032	ENSMUSG00000036403	Cep135	BC062951|Cep4|Gm1044	centrosomal protein 135	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-73211085-2	chr6	73210985	73211185	+	628.299988	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164669, intron 2 of 76)	ORR1F|LTR|ERVL-MaLR	10546.0	NM_001164669	330355.0	Mm.333166	NM_001164669	ENSMUSG00000052861	Dnah6	9830168K20|A730004I20Rik|Dnahc6|mKIAA1697|mdhc6	dynein, axonemal, heavy chain 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-8342844-3	chr10	8342759	8342959	+	892.349976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177387, intron 2 of 7)	L2c|LINE|L2	175966.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-100663200-4	chr5	100663109	100663309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027978, intron 3 of 6)	intron (NM_027978, intron 3 of 6)	11047.0	NM_027978	71883.0	Mm.260661	NM_027978	ENSMUSG00000029319	Coq2	2310002F18Rik|PHB:PPT	coenzyme Q2 4-hydroxybenzoate polyprenyltransferase	protein-coding	-0.862030634104754	-0.846340151604894	-0.851500953857566	-0.855415204408448	-0.861037010143218	-0.845072134051678	0.297607450125457	-0.854727637484263	3.74638014297664	0.190525819776624	1
Merged-chr5-25529778-4	chr5	25529662	25529862	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027388)	promoter-TSS (NR_027388)	-256.0	NR_027388	73571.0	Mm.105263	NR_027388	ENSMUSG00000101856	1700096K18Rik	-	RIKEN cDNA 1700096K18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-43351163-4	chr8	43351062	43351262	+	924.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44153.0	NM_009556	22702.0	Mm.285848	NM_009556	ENSMUSG00000051176	Zfp42	Rex-1|Rex1|Zfp-42	zinc finger protein 42	protein-coding	3.94648239097069	3.95937995133476	3.90078697292494	3.6531509372289	3.5670465425886	4.30823724768272	4.05933132787026	3.51133414015228	0.0360644949882365	0.939025270922883	0.998431161219273
Merged-chr15-30606404-1	chr15	30606304	30606504	+	650.0	f1_balb.idr	intron (NM_001355502, intron 3 of 21)	intron (NM_001355502, intron 3 of 21)	-432722.0	NR_045186	73784.0	Mm.66947	NR_045186	ENSMUSG00000115474	4930430F21Rik	-	RIKEN cDNA 4930430F21 gene	ncRNA	0.80950157247033	1.18582336107434	0.43165846873707	0.425347868088373	0.416389778577698	0.961967224911493	0.916496630646052	0.60129508307363	-0.0866382391056473	0.959549644068699	1
Merged-chr9-61443579-4	chr9	61443461	61443661	+	925.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	71195.0	NM_001083927	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-5050042-4	chr6	5049932	5050132	+	887.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181595, intron 3 of 15)	CT-rich|Low_complexity|Low_complexity	143914.0	NM_011134	18979.0	Mm.237657	NM_011134	ENSMUSG00000002588	Pon1	Pon	paraoxonase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100401049-4	chr11	100400969	100401169	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132425, intron 1 of 3)	intron (NR_132425, intron 1 of 3)	2953.0	NR_132425	102635937.0	Mm.421398	NR_132425		Gm12348	-	predicted gene 12348	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-90628141-3	chr3	90628072	90628272	+	782.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15278.0	NM_011313	20200.0	Mm.100144	NM_011313	ENSMUSG00000001025	S100a6	2A9|5B10|CALCYCLIN|Cacy|PRA	S100 calcium binding protein A6 (calcyclin)	protein-coding	1.9945886146046	1.64476702267751	2.64063774330271	0.918080833070318	1.45726349049242	2.08370433695914	0.943959571115831	0.921664250257602	-1.36226537268162	0.283390661280181	0.786669941647505
Merged-chr1-152266577-3	chr1	152266467	152266667	+	647.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5b|LINE|L1	120115.0	NM_025677	66637.0	Mm.379120	NM_025677	ENSMUSG00000014980	Tsen15	5730449L18Rik|AL023077|Sen15	tRNA splicing endonuclease subunit 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-94857989-4	chr8	94857896	94858096	+	897.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009090, intron 2 of 8)	CpG-14378	546.0	NM_009090	20021.0	Mm.292492	NM_009090	ENSMUSG00000031783	Polr2c	33kDa|RPB3|Rpo2-3|mRBP31	polymerase (RNA) II (DNA directed) polypeptide C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-31170486-4	chr2	31170402	31170602	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178760, intron 4 of 17)	intron (NM_178760, intron 4 of 17)	18186.0	NM_178760	277463.0	Mm.236074	NM_178760	ENSMUSG00000000194	Gpr107	9930033D15Rik|AI790205|C530034M11|mKIAA1624	G protein-coupled receptor 107	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-12465513-3	chr19	12465438	12465638	+	845.464294	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010821)	TTS (NM_010821)	4759.0	NM_010821	17476.0	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	0.33955268554809	0.619419158033848	0.589887694389557	0.355534500278033	1.59172694585788	0.379542456192871	0.367592386772249	1.42509874497387	3.09968442298712	0.0888578558277224	0.459532997509058
Merged-chr7-17061223-2	chr7	17061123	17061323	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162950, intron 1 of 14)	intron (NM_001162950, intron 1 of 14)	1204.0	NM_001162950	53417.0	Mm.135110	NM_016868	ENSMUSG00000004328	Hif3a	Ipas|MOP7|NEPAS|bHLHe17	hypoxia inducible factor 3, alpha subunit	protein-coding	-0.925372063323026	-0.911618886840961	-0.474816144882742	-0.921917183691781	-0.924859202084133	-0.723035560040274	-0.742251448995424	-0.921552635690447	-0.51187575522138	0.861280412909774	1
Merged-chr15-78352870-1	chr15	78352770	78352970	+	607.0	f1_c57bl6.idr	Intergenic	Intergenic	4271.0	NR_106137	102465776.0		NR_106137	ENSMUSG00000098996	Mir7676-1	Gm27600|mmu-mir-7676-1	microRNA 7676-1	ncRNA	-0.734697168562934	-1.28094420828655	-1.29131886204401	-1.29984091153697	-1.31008363841169	-1.2786959775384	-1.28897026783925	-1.29831546875223	-2.42902550944018	0.482518537989684	1
Merged-chr10-67646847-4	chr10	67646751	67646951	+	934.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74892.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117073156-2	chr11	117073056	117073256	+	614.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-3627.0	NR_027059	76972.0	Mm.309167	NR_027059	ENSMUSG00000086859	Snhg20	2810008D09Rik	small nucleolar RNA host gene 20	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-144287862-2	chr5	144287762	144287962	+	638.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025833, intron 3 of 13)	intron (NM_025833, intron 3 of 13)	10801.0	NR_040432	100504231.0	Mm.441035	NR_040432	ENSMUSG00000086894	Gm15708	-	predicted gene 15708	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-112326776-3	chr5	112326667	112326867	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018783, intron 1 of 13)	intron (NM_018783, intron 1 of 13)	398.0	NM_018783	54723.0	Mm.172947	NM_018783	ENSMUSG00000029345	Tfip11	2810002G02Rik|AF097181|AW046167|Srr1|TIP33|Tip39	tuftelin interacting protein 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-40874078-2	chr9	40873978	40874178	+	948.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178245)	promoter-TSS (NM_178245)	-49.0	NM_178245	244813.0	Mm.261652	NM_178245	ENSMUSG00000054360	Bsx	Bsx1a|Bsx1b	brain specific homeobox	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-161170824-4	chr1	161170704	161170904	+	943.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_028664)	TTS (NM_028664)	-11490.0	NM_001195189	100502590.0	Mm.449990	NM_001195189	ENSMUSG00000049160	Tex50	4930469G21Rik	testis expressed 50	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-59885058-2	chr10	59884958	59885158	+	729.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019965, intron 1 of 8)	intron (NM_019965, intron 1 of 8)	5467.0	NM_019965	56709.0	Mm.103610	NM_019965	ENSMUSG00000020109	Dnajb12	Dj10|mDj10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-88222135-1	chr11	88222035	88222235	+	771.5	f0_balb.idr	Intergenic	Eulor3|DNA?|DNA?	17747.0	NM_001291271	64656.0	Mm.168680	NM_024174	ENSMUSG00000023723	Mrps23	D11Bwg1153e|MRP-S23|Rpms23|S23mt	mitochondrial ribosomal protein S23	protein-coding	-0.681471409257796	-0.671132777461487	-0.674525569304908	-0.677139484538915	-0.68082760252995	-0.670367259017778	-0.210531783587336	-0.138443981984771	3.29707530316015	0.247606999011441	1
Merged-chr19-45326642-2	chr19	45326542	45326742	+	578.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37092.0	NM_001360122	12234.0	Mm.119717	NM_009771	ENSMUSG00000025217	Btrc	Beta-Trcp1|E3RS-IkappaB|E3RSIkappaB|FWD1|Fbw1a|HOS|SCF b-TRCP|Slimb|b-TrCP|beta-TrCP	beta-transducin repeat containing protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-3485621-2	chr5	3485521	3485721	+	679.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 5 of 7)	RMER19B|LTR|ERVK	-58212.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69061117-4	chr11	69061025	69061225	+	932.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028005, exon 1 of 1)	3' UTR (NM_028005, exon 1 of 1)	1350.0	NM_028005	71923.0	Mm.340257	NM_028005	ENSMUSG00000045176	Borcs6	2310047M10Rik	BLOC-1 related complex subunit 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-4506637-2	chr2	4506537	4506737	+	830.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 5 of 23)	intron (NM_001177843, intron 5 of 23)	-53117.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-133129381-4	chr1	133129280	133129480	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1786.0	NM_133819	108954.0	Mm.293628	NM_133819	ENSMUSG00000046062	Ppp1r15b	1810033K10Rik|AI606441|C530022L24Rik|CReP	protein phosphatase 1, regulatory (inhibitor) subunit 15b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-99252963-4	chr6	99252860	99253060	+	939.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001197321, intron 2 of 17)	intron (NM_001197321, intron 2 of 17)	13555.0	NM_001197321	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-80756101-2	chr1	80756001	80756201	+	827.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_175291, intron 1 of 55)	intron (NM_175291, intron 1 of 55)	2452.0	NM_175291	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-120002263-1	chr2	120002163	120002363	+	713.0	f0_balb.idr	intron (NM_001355293, intron 2 of 30)	intron (NM_001355293, intron 2 of 30)	-15254.0	NR_106125	102466842.0		NR_106125	ENSMUSG00000098632	Mir7665	Gm27478|mmu-mir-7665	microRNA 7665	ncRNA	2.1166026787086	1.80296976310196	2.75439036390925	2.67821939332101	2.80313967661337	2.22383440386202	2.95236865451399	2.69176822215145	0.618473602045803	0.433631851852726	0.905765139019674
Merged-chr13-56182525-2	chr13	56182421	56182621	+	736.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3636.0	NM_001168615	212937.0	Mm.116697	NM_145976	ENSMUSG00000049625	Tifab	-	TRAF-interacting protein with forkhead-associated domain, family member B	protein-coding	0.970143522755255	0.517453659843507	0.687349489902248	0.66886826980314	0.494905545125479	1.02087344731884	1.09182709344299	0.937774022799124	1.01521876925495	0.522618552732272	1
Merged-chr8-35709797-3	chr8	35709702	35709902	+	957.0833130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	116757.0	NM_027998	71908.0	Mm.37817	NM_027998	ENSMUSG00000055976	Cldn23	2310014B08Rik	claudin 23	protein-coding	1.1428801601437	2.76259203324179	2.29908493144264	1.94154130395846	0.695708538260078	0.786492343934686	0.758598191831854	0.733609480429415	-5.60915790304499	7.59657930627817e-05	0.00248291882675979
Merged-chr18-9790797-5	chr18	9790679	9790879	+	912.0633539999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130449, intron 2 of 9)	L1_Mus2|LINE|L1	83131.0	NM_130449	140792.0	Mm.218571	NM_130449	ENSMUSG00000036103	Colec12	CL-P1|SRCL|Scara4	collectin sub-family member 12	protein-coding	-0.567148614269156	-0.557093837314114	-0.560403271269974	-0.562946449351477	-0.0213088470280686	-0.367656977574137	-0.5596746226957	-0.268657402571967	3.3286782446527	0.201456099851512	1
Merged-chr17-35258289-5	chr17	35258112	35258312	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4882.0	NM_010380	14964.0	Mm.439675	NM_010380	ENSMUSG00000073411	H2-D1	H-2D|H2-D	histocompatibility 2, D region locus 1	protein-coding	5.25562676189664	5.40229662873825	5.20556010734798	5.41733703287377	6.42543936124774	6.2768372027988	6.03525129067034	5.5478899819993	0.883115632112142	0.00103385211580513	0.0199852164641729
Merged-chr3-55080268-4	chr3	55080152	55080352	+	850.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040593, intron 6 of 7)	intron (NR_040593, intron 6 of 7)	25010.0	NR_040593	70970.0	Mm.251485	NR_040593	ENSMUSG00000106589	4931419H13Rik	-	RIKEN cDNA 4931419H13 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-114831124-2	chr13	114831024	114831224	+	792.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12887.0	NM_001113374	17434.0	Mm.19027	NM_013826	ENSMUSG00000015536	Mocs2	AI415403	molybdenum cofactor synthesis 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-138993349-2	chr5	138993249	138993449	+	665.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_008808, exon 2 of 6)	exon (NM_008808, exon 2 of 6)	1604.0	NM_008808	18590.0	Mm.2675	NM_008808	ENSMUSG00000025856	Pdgfa	-	platelet derived growth factor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-163660224-3	chr2	163660107	163660307	+	862.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039390, intron 2 of 4)	intron (NM_001039390, intron 2 of 4)	1749.0	NM_001164053	18769.0	Mm.10091	NM_011106	ENSMUSG00000035268	Pkig	PKIgamma	protein kinase inhibitor, gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-98806131-2	chr7	98806031	98806231	+	730.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-28981.0	NM_001285794	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-103744375-2	chr3	103744201	103744401	+	949.833374	f1_balb.idr|f1_c57bl6.idr	TTS (NR_125731)	TTS (NR_125731)	-6300.0	NM_133859	99543.0	Mm.211535	NM_133859	ENSMUSG00000027848	Olfml3	2810002E22Rik|AI115209|AW550633|HNOEL-iso|ONT3|mONT3	olfactomedin-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19272247-4	chr7	19272181	19272381	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001282021)	promoter-TSS (NM_001282021)	-427.0	NM_001282022	22323.0	Mm.9684	NM_009499	ENSMUSG00000030403	Vasp	-	vasodilator-stimulated phosphoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-46443311-4	chr2	46443211	46443411	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	746706.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-86887685-2	chr10	86887585	86887785	+	760.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_138673, intron 42 of 68)	intron (NM_138673, intron 42 of 68)	108680.0	NM_175331	103466.0	Mm.200446	NM_175331	ENSMUSG00000054027	Nt5dc3	AU040402|AW540062|C630002B14Rik|TU12B1-TY	5'-nucleotidase domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-88259244-3	chr1	88259143	88259343	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_198652, exon 8 of 8)	3' UTR (NM_198652, exon 8 of 8)	10165.0	NR_040291	78605.0	Mm.384762	NR_040291		6430706D22Rik	-	RIKEN cDNA 6430706D22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-121602267-4	chr3	121602183	121602383	+	983.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41202.0	NR_036456	100503044.0	Mm.65320	NM_176992	ENSMUSG00000044522	A730020M07Rik	-	RIKEN cDNA A730020M07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97279508-5	chr6	97279375	97279575	+	886.679077	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-26695.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	2.39213779922788	1.29261287339659	2.12505668772091	1.46798051505674	2.25942893883571	2.08323666256164	2.25483770675495	2.0762415991333	0.654812524665196	0.508582461249847	0.943622639080647
Merged-chr1-146969012-2	chr1	146968912	146969112	+	807.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	471325.0	NM_001145807	215378.0	Mm.441817	NM_153539	ENSMUSG00000035131	Brinp3	B830045N13Rik|Fam5c	bone morphogenetic protein/retinoic acid inducible neural specific 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34288408-1	chr17	34288308	34288508	+	558.0	f1_c57bl6.idr	promoter-TSS (NM_010378)	promoter-TSS (NM_010378)	-637.0	NM_010378	14960.0	Mm.235338	NM_010378	ENSMUSG00000036594	H2-Aa	Aalpha|H-2Aa|H2Aa|I-Aalpha|IAalpha|Ia-1|Ia1	histocompatibility 2, class II antigen A, alpha	protein-coding	3.01582060358805	3.50678952458032	3.78478438268695	4.8250121946528	3.0430209925142	3.43318993274604	3.74315358210351	2.57292879510431	-1.03216810967916	0.0902708510235512	0.464040133067938
Merged-chr16-8677057-2	chr16	8676957	8677157	+	999.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3713.0	NM_001324517	436336.0	Mm.357666	NM_001324517		Gm5767	EG436336|Gm43786	predicted gene 5767	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118797129-2	chr9	118797029	118797229	+	903.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 3 of 13)	intron (NM_001113514, intron 3 of 13)	85437.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44483099-2	chr9	44482999	44483199	+	660.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001357490, exon 1 of 8)	5' UTR (NM_001357490, exon 1 of 8)	274.0	NM_001357490	80288.0	Mm.370270	NM_030256	ENSMUSG00000063382	Bcl9l	B9L|BC003321|BCL9-2|DLNB11	B cell CLL/lymphoma 9-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-10557495-4	chr10	10557381	10557581	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026405, intron 1 of 2)	URR1B|DNA|hAT-Charlie	726.0	NM_026405	67844.0	Mm.31486	NM_026405	ENSMUSG00000019832	Rab32	2810011A17Rik|AU022057	RAB32, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-37854788-4	chr16	37854687	37854887	+	706.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	5S|rRNA|rRNA	-13613.0	NM_177093	320184.0	Mm.390882	NM_177093	ENSMUSG00000034158	Lrrc58	1810012N18Rik|C330018J07Rik	leucine rich repeat containing 58	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-127610966-4	chr5	127610854	127611054	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133895, intron 1 of 7)	intron (NM_133895, intron 1 of 7)	6438.0	NM_133895	100561.0	Mm.28506	NM_133895	ENSMUSG00000029416	Slc15a4	AA987064|AW742963|C130069N12Rik|PHT1|PTR4	solute carrier family 15, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152611559-2	chr1	152611459	152611659	+	659.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346119, intron 2 of 17)	intron (NM_001346119, intron 2 of 17)	13658.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-82987468-2	chr15	82987368	82987568	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-28172.0	NR_037241	100526477.0		NR_037241	ENSMUSG00000092751	Mir3080	mmu-mir-3080	microRNA 3080	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-118850652-2	chr7	118850552	118850752	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001168220, exon 3 of 5)	exon (NM_001168220, exon 3 of 5)	4961.0	NM_001168220	66356.0	Mm.482278	NM_023197	ENSMUSG00000030980	Knop1	2310008H09Rik|Tsg118	lysine rich nucleolar protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-3124032-4	chr11	3123953	3124153	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_003517)	promoter-TSS (NR_003517)	32.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134225711-4	chr6	134225598	134225798	+	958.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 4 of 8)	intron (NM_001303102, intron 4 of 8)	-170631.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-61700774-2	chr9	61700674	61700874	+	656.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	213736.0	NM_018853	56040.0	Mm.3158	NM_018853	ENSMUSG00000007892	Rplp1	2410042H16Rik|Arpp1|C430017H15Rik	ribosomal protein, large, P1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-35148193-3	chr6	35148095	35148295	+	659.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	-14458.0	NM_001164414	53621.0	Mm.214525	NM_016877	ENSMUSG00000038784	Cnot4	Not4|Not4h|Not4hp	CCR4-NOT transcription complex, subunit 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-88330897-4	chr10	88330807	88331007	+	924.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027878, intron 4 of 6)	intron (NM_027878, intron 4 of 6)	26168.0	NM_027878	71712.0	Mm.35450	NM_027878	ENSMUSG00000020057	Dram1	1200002N14Rik|Dram	DNA-damage regulated autophagy modulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-120068879-3	chr9	120068785	120068985	+	829.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009987)	promoter-TSS (NM_009987)	-589.0	NM_009987	13051.0	Mm.44065	NM_009987	ENSMUSG00000052336	Cx3cr1	-	chemokine (C-X3-C motif) receptor 1	protein-coding	1.16258056305417	0.995530831715684	1.38571937496113	0.946961742706472	1.05302767052468	0.791215320033727	1.3980217880031	1.54591872423878	0.438581292498655	0.741967186599063	0.998431161219273
Merged-chr6-85588743-4	chr6	85588640	85588840	+	992.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145223, intron 1 of 22)	intron (NM_145223, intron 1 of 22)	1209.0	NM_145223	236266.0	Mm.246967	NM_145223	ENSMUSG00000063810	Alms1	bbb	ALMS1, centrosome and basal body associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69644702-2	chr11	69644602	69644802	+	635.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011814, intron 7 of 16)	ORR1A2|LTR|ERVL-MaLR	-9183.0	NR_035420	100316749.0		NR_035420	ENSMUSG00000080573	Mir467f	Mirn467f|mmu-mir-467f	microRNA 467f	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-8923701-4	chr3	8923610	8923810	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_025434, exon 1 of 3)	exon (NM_025434, exon 1 of 3)	147.0	NM_025434	66230.0	Mm.38460	NM_025434	ENSMUSG00000040269	Mrps28	1500012D08Rik|AW061224	mitochondrial ribosomal protein S28	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-122638367-4	chr14	122638248	122638448	+	923.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153443, intron 7 of 24)	intron (NR_153443, intron 7 of 24)	104020.0	NM_144844	110821.0	Mm.23876	NM_144844	ENSMUSG00000041650	Pcca	C79630	propionyl-Coenzyme A carboxylase, alpha polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-17900131-2	chr17	17900029	17900229	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12305.0	NM_008039	14289.0	Mm.378918	NM_008039	ENSMUSG00000052270	Fpr2	E330010I07Rik|Fpr-rs2	formyl peptide receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64343423-2	chr5	64343340	64343540	+	776.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 17 of 18)	intron (NM_001289514, intron 17 of 18)	113083.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	0.454398087831768	1.28265861573635	1.11038417859659	0.467622012615058	0.456379772356459	1.04488028035294	1.12280242264816	0.469000632135264	-0.348531099549865	0.842992016914921	0.998431161219273
Merged-chr16-33185870-1	chr16	33185770	33185970	+	623.0	f0_balb.idr	exon (NM_176840, exon 1 of 13)	exon (NM_176840, exon 1 of 13)	799.0	NM_176840	106326.0	Mm.486405	NM_176840	ENSMUSG00000022807	Osbpl11	9430097N02Rik|AI132306|AU019795|ORP-11	oxysterol binding protein-like 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-10288637-2	chr2	10288537	10288737	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-81814.0	NM_001198808	353282.0	Mm.329991	NM_177386	ENSMUSG00000061186	Sfmbt2	D2Wsu23e|D330030P06Rik	Scm-like with four mbt domains 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-115934706-2	chr13	115934606	115934806	+	582.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	374982.0	NM_021459	16392.0	Mm.42242	NM_021459	ENSMUSG00000042258	Isl1	-	ISL1 transcription factor, LIM/homeodomain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-60975845-2	chr1	60975745	60975945	+	563.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2069.0	NM_017480	54167.0	Mm.42044	NM_017480	ENSMUSG00000026009	Icos	AILIM|CCLP|CRP-1|H4|Ly115	inducible T cell co-stimulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-24323593-4	chr13	24323478	24323678	+	935.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3826.0	NM_001284519	12763.0	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-92895265-3	chr1	92895172	92895372	+	866.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347091, intron 4 of 17)	intron (NM_001347091, intron 4 of 17)	7634.0	NM_172850	241158.0	Mm.108280	NM_172850	ENSMUSG00000034212	Ankmy1	4930483I10Rik|ZMYND13	ankyrin repeat and MYND domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124862989-1	chr5	124862889	124863089	+	990.0	f0_balb.idr	promoter-TSS (NM_144819)	promoter-TSS (NM_144819)	284.0	NM_001081750	269704.0	Mm.138617	NM_001081750	ENSMUSG00000079215	Zfp664	AW060232|D930038J03Rik|ZFOC1|Znf664	zinc finger protein 664	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-6416139-2	chr1	6416039	6416239	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	BGLII_B|LTR|ERVK	56808.0	NM_001195732	620393.0	Mm.388992	NM_001195732	ENSMUSG00000087247	Alkal1	EG620393|Fam150a	ALK and LTK ligand 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-47617146-2	chr10	47617046	47617246	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	1372397.0	NR_028276	108637.0		NR_028276	ENSMUSG00000096263	Snord14c	Gm23107|Rnu14|U14	small nucleolar RNA, C/D box 14C	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-36628490-2	chr16	36628390	36628590	+	604.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019388, intron 2 of 7)	intron (NM_019388, intron 2 of 7)	37587.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128093328-4	chr10	128093233	128093433	+	966.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054078, intron 1 of 29)	CpG	550.0	NM_054078	116848.0	Mm.252213	NM_054078	ENSMUSG00000040054	Baz2a	AA415431|C030005G16Rik|C78388|Tip5|Walp3|mKIAA0314	bromodomain adjacent to zinc finger domain, 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-118117690-4	chr7	118117588	118117788	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28|LTR|ERVL	-1541.0	NM_170669	267019.0	Mm.288212	NM_170669	ENSMUSG00000008683	Rps15a	A630031B11Rik	ribosomal protein S15A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-151270829-4	chr1	151270717	151270917	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-73669.0	NM_001359262	117198.0	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-119321094-2	chr9	119320994	119321194	+	687.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359582, intron 2 of 18)	intron (NM_001359582, intron 2 of 18)	1333.0	NR_045693	108737.0	Mm.293565	NM_133985	ENSMUSG00000036737	Oxsr1	2210022N24Rik|2810422B09Rik|AI462649|AW209236|Osr1|mKIAA1101	oxidative-stress responsive 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-92812026-2	chr2	92811926	92812126	+	626.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-103075.0	NM_030725	80976.0	Mm.33490	NM_030725	ENSMUSG00000027220	Syt13	5730409J20Rik|AI549909|mKIAA1427	synaptotagmin XIII	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-75180432-4	chr1	75180309	75180509	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023732)	promoter-TSS (NM_023732)	-17.0	NM_023732	74104.0	Mm.28663	NM_023732	ENSMUSG00000026198	Abcb6	1200005B17Rik	ATP-binding cassette, sub-family B (MDR/TAP), member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180290026-6	chr1	180289944	180290144	+	918.477783	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33744.0	NM_001128605	19165.0	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-35480281-3	chr2	35480182	35480382	+	732.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18833.0	NM_001145821	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-132367820-4	chr1	132367756	132367956	+	927.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311108)	promoter-TSS (NM_001311108)	92.0	NM_001311108	68875.0	Mm.273785	NM_178874	ENSMUSG00000042066	Tmcc2	1110063G11Rik	transmembrane and coiled-coil domains 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-88200697-4	chr10	88200577	88200777	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027487)	promoter-TSS (NM_027487)	-420.0	NM_026070	67282.0	Mm.208465	NM_026070	ENSMUSG00000020056	Washc3	2900091E11Rik|5730495F03Rik|Ccdc53	WASH complex subunit 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99982449-3	chr7	99982349	99982549	+	978.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-1991.0	NM_175388	108937.0	Mm.323087	NM_175388	ENSMUSG00000058761	Rnf169	2900057K09Rik	ring finger protein 169	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-85802013-3	chr4	85801896	85802096	+	762.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-251919.0	NM_029967	77739.0	Mm.331690	NM_029967	ENSMUSG00000066113	Adamtsl1	5930437A14Rik|6720426B09Rik|ADAMTSL-1	ADAMTS-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-99202816-10	chr5	99202631	99202831	+	896.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50196.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-24540909-4	chr5	24540803	24541003	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310476)	promoter-TSS (NM_001310476)	75.0	NM_001310476	117590.0	Mm.207071	NM_080444	ENSMUSG00000038204	Asb10	Asb-10|BB137407	ankyrin repeat and SOCS box-containing 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-23675504-2	chr17	23675404	23675604	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_013749)	TTS (NM_013749)	-1627.0	NM_001357380	386612.0	Mm.328831	NM_001008425	ENSMUSG00000041319	Thoc6	F830014G06Rik|Wdr58	THO complex 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-47058849-2	chr7	47058749	47058949	+	640.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8209.0	NM_026436	67893.0	Mm.27338	NM_026436	ENSMUSG00000010307	Tmem86a	1810054O13Rik|AI414959|AW742698	transmembrane protein 86A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-102744114-4	chr2	102744006	102744206	+	980.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_153852, exon 3 of 3)	non-coding (NR_153852, exon 3 of 3)	2654.0	NR_153852	102637542.0	Mm.371582	NR_153852		Gm13872	-	predicted gene 13872	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-101699412-4	chr2	101699222	101699422	+	896.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009424, exon 8 of 8)	3' UTR (NM_009424, exon 8 of 8)	20902.0	NM_001303273	22034.0	Mm.292729	NM_009424	ENSMUSG00000027164	Traf6	2310003F17Rik|AI851288|C630032O20Rik	TNF receptor-associated factor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-145130288-2	chr5	145130188	145130388	+	552.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001033313, exon 6 of 6)	3' UTR (NM_001033313, exon 6 of 6)	9801.0	NM_001033313	231887.0	Mm.188851	NM_001033313	ENSMUSG00000029623	Pdap1	HASPP28|PAP|PAP1	PDGFA associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-10546836-2	chr10	10546736	10546936	+	668.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026405, intron 2 of 2)	intron (NM_026405, intron 2 of 2)	11371.0	NM_026405	67844.0	Mm.31486	NM_026405	ENSMUSG00000019832	Rab32	2810011A17Rik|AU022057	RAB32, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-59874547-2	chr11	59874447	59874647	+	733.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134029, intron 3 of 4)	intron (NM_134029, intron 3 of 4)	26474.0	NM_134029	103850.0	Mm.41761	NM_134029	ENSMUSG00000032615	Nt5m	2010013E09Rik|AI846937|dNT-2	5',3'-nucleotidase, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-67422026-4	chr7	67421927	67422127	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49169.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-54972575-4	chr11	54972469	54972669	+	871.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9629.0	NM_001271455	57783.0	Mm.259671	NM_021327	ENSMUSG00000020400	Tnip1	ABIN|ABIN-1|ABIN1|AU018810|Naf1|Nef|VAN	TNFAIP3 interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-25143660-4	chr12	25143548	25143748	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14474.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	5.51073344837176	6.17731351157572	5.6277552961907	4.6589714115308	6.10397625614184	5.99893736005093	5.63822556526189	5.5178307122307	0.281606541665401	0.368111707652023	0.862916999449085
Merged-chr1-52766004-4	chr1	52765885	52766085	+	861.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38627.0	NM_001357464	98682.0	Mm.491173	NM_133829	ENSMUSG00000041439	Mfsd6	2210010L05Rik|9630025I22Rik|AI836200|AW212394|MMR2	major facilitator superfamily domain containing 6	protein-coding	0.960680046849416	0.405564636594444	0.397821366252041	0.705965887452329	0.779684001878007	1.15649036526731	0.58597706823922	0.392872727169973	0.660843128432064	0.701817092975085	1
Merged-chr9-116084852-4	chr9	116084738	116084938	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	90525.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	2.71243222855684	2.68496493772518	2.45609175547476	2.85565593105503	2.98279849782453	2.70443323322872	2.95873644191557	3.45869247980321	0.706408919658187	0.290355550132425	0.795362075454071
Merged-chr1-37486623-4	chr1	37486499	37486699	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_024017, exon 1 of 1)	non-coding (NR_024017, exon 1 of 1)	2006.0	NR_024017	77633.0	Mm.483177	NR_024017	ENSMUSG00000103948	4930594C11Rik	-	G1 to S phase transition pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117135691-2	chr11	117135591	117135791	+	704.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166507, intron 2 of 16)	intron (NM_001166507, intron 2 of 16)	20519.0	NM_001166506	74136.0	Mm.272312	NM_028777	ENSMUSG00000020823	Sec14l1	1200017E04Rik|2810012L19Rik|Naa-35	SEC14-like lipid binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-70119789-4	chr12	70119704	70119904	+	796.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16A2|LTR|ERVL	-7769.0	NR_104397	18080.0	Mm.244047	NM_008697	ENSMUSG00000021068	Nin	3110068G20Rik|AI385615|AU024711|mKIAA1565	ninein	protein-coding	1.2578523336754	1.31135064816471	1.63910359595283	0.630423526374145	0.609930551766639	0.666039071022467	2.16392399816777	0.632902299918662	-0.0108644108566276	0.994439711077434	0.998431161219273
Merged-chr4-144892724-4	chr4	144892619	144892819	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001172424)	promoter-TSS (NM_001172424)	-108.0	NM_001172424	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-102999318-2	chr2	102999218	102999418	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	74195.0	NM_175094	27402.0	Mm.315011	NM_175094	ENSMUSG00000010914	Pdhx	AI481367|E3bp|Pdx1	pyruvate dehydrogenase complex, component X	protein-coding	-1.10262295305493	-1.0808548865726	-1.09209159927202	-0.933629306001664	-1.10213768760223	-1.07841984405556	-1.0895478538186	-0.557227009491809	1.70342206228902	0.599203224400871	1
Merged-chr4-126057993-4	chr4	126057931	126058131	+	919.5125119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356446)	promoter-TSS (NM_001356446)	-534.0	NM_001356446	230751.0	Mm.38907	NM_172701	ENSMUSG00000042616	Oscp1	1810007P19Rik|5730415O04|6030436A01Rik	organic solute carrier partner 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-25500725-2	chr5	25500625	25500825	+	796.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_030700, exon 1 of 1)	non-coding (NR_030700, exon 1 of 1)	928.0	NR_030700	320965.0	Mm.32025	NR_030700		4831440E17Rik	-	RIKEN cDNA 4831440E17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-84752030-2	chr6	84751930	84752130	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177077, intron 19 of 21)	intron (NM_177077, intron 19 of 21)	-158122.0	NM_001177713	232174.0	Mm.255246	NM_175475	ENSMUSG00000063415	Cyp26b1	CP26|P450RAI-2	cytochrome P450, family 26, subfamily b, polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-63497385-4	chr15	63497276	63497476	+	983.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17768.0	NR_045279	432958.0	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-95540652-4	chr9	95540572	95540772	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19145.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-5360061-4	chr5	5359973	5360173	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011074, intron 2 of 14)	intron (NM_011074, intron 2 of 14)	20178.0	NM_011074	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	3.0478302143166	3.86218019106335	4.09513562502973	4.61726652645543	4.93459638100463	2.92935231949052	4.51111114670292	4.71333807804997	0.586042234153637	0.270223465266347	0.773403341430574
Merged-chr17-43076030-3	chr17	43075890	43076090	+	862.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178589, intron 4 of 5)	intron (NM_178589, intron 4 of 5)	59435.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	2.7883777715348	3.02907899975935	2.3690190373256	2.66247454698868	2.54987806498349	2.95524202236025	2.04980595953445	2.86453177337435	-0.162786562664674	0.824323200669724	0.998431161219273
Merged-chr18-89609405-2	chr18	89609305	89609505	+	634.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039173, intron 1 of 7)	intron (NM_001039173, intron 1 of 7)	159731.0	NM_001039173	623279.0	Mm.447164	NM_001039173	ENSMUSG00000073514	Dok6	Dok-6	docking protein 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-86437939-3	chr17	86437862	86438062	+	600.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011104, intron 2 of 14)	intron (NM_011104, intron 2 of 14)	-150784.0	NR_045435	72104.0	Mm.443401	NR_045435	ENSMUSG00000100738	2010106C02Rik	-	RIKEN cDNA 2010106C02 gene	ncRNA	1.11815354904693	1.26024647995894	1.50542158400811	1.00626591958481	0.778422370279015	0.82954492177372	1.74767695231049	2.01713448880982	0.840071397500995	0.533120398222503	0.952082138848632
Merged-chr14-62842142-2	chr14	62842042	62842242	+	679.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175546, intron 1 of 11)	intron (NM_175546, intron 1 of 11)	4421.0	NR_106174	102465889.0		NR_106174	ENSMUSG00000099245	Mir8098	Gm27462|mmu-mir-8098	microRNA 8098	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-156560885-4	chr3	156560803	156561003	+	901.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177274)	promoter-TSS (NM_177274)	784.0	NR_040398	329782.0	Mm.183459	NR_040398	ENSMUSG00000085084	4930570G19Rik	C630015G22	RIKEN cDNA 4930570G19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-56866724-2	chr3	56866624	56866824	+	563.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5b|LINE|L1	435264.0	NM_008536	17112.0	Mm.856	NM_008536	ENSMUSG00000027800	Tm4sf1	L6|M3s1	transmembrane 4 superfamily member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100867049-2	chr7	100866949	100867149	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER2|DNA|TcMar-Tigger	-3636.0	NM_177073	320100.0	Mm.40336	NM_177073	ENSMUSG00000008318	Relt	E430021K24Rik|Tnfrsf19l	RELT tumor necrosis factor receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-111325787-2	chr8	111325687	111325887	+	589.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310613, intron 4 of 10)	ORR1B1|LTR|ERVL-MaLR	12418.0	NM_001310613	74568.0	Mm.207971	NM_029005	ENSMUSG00000012519	Mlkl	9130019I15Rik	mixed lineage kinase domain-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-79666048-2	chr3	79665975	79666175	+	935.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_212452, intron 9 of 17)	intron (NM_212452, intron 9 of 17)	36996.0	NM_029482	75939.0	Mm.221520	NM_029482	ENSMUSG00000027811	4930579G24Rik	-	RIKEN cDNA 4930579G24 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3765780-2	chr19	3765680	3765880	+	909.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1641.0	NM_001167889	225888.0	Mm.278578	NM_144871	ENSMUSG00000045098	Kmt5b	AA117471|C630029K18Rik|Suv4-20h1|Suv420h1	lysine methyltransferase 5B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-95562774-2	chr9	95562674	95562874	+	769.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_198414)	TTS (NM_198414)	2957.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-121316097-2	chr9	121315997	121316197	+	858.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_152160, intron 1 of 17)	intron (NR_152160, intron 1 of 17)	18595.0	NR_152160	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-88576005-4	chr1	88575910	88576110	+	872.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24493.0	NR_037971	100503197.0	Mm.99352	NR_037971	ENSMUSG00000100798	Gm19589	-	predicted gene, 19589	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116592598-4	chr11	116592487	116592687	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1100.0	NR_033223	11298.0	Mm.42233	NM_009591	ENSMUSG00000020804	Aanat	AA-NAT|Nat-2|Nat4|Snat	arylalkylamine N-acetyltransferase	protein-coding	-0.238846091686569	-0.17771126978074	-0.368150166595259	-0.37112054666783	-0.113921167624838	0.240310558342723	-0.367299578583166	-0.37060219503145	1.75409889113936	0.461999802998829	1
Merged-chr7-131410580-4	chr7	131410480	131410680	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025826)	promoter-TSS (NM_025826)	-21.0	NM_025826	66885.0	Mm.334274	NM_025826	ENSMUSG00000030861	Acadsb	1300003O09Rik|2-MEBCAD|BB066609|SBCAD	acyl-Coenzyme A dehydrogenase, short/branched chain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21368421-4	chr9	21368321	21368521	+	991.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001277322)	promoter-TSS (NM_001277322)	-111.0	NM_001277322	16201.0	Mm.440026	NM_010561	ENSMUSG00000032178	Ilf3	MBII-26|MPHOSPH4|NF90|NFAR	interleukin enhancer binding factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-25574104-2	chr2	25574004	25574204	+	634.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029293, intron 2 of 2)	(GGGTG)n|Simple_repeat|Simple_repeat	767.0	NM_029293	75454.0	Mm.458079	NM_029293	ENSMUSG00000036504	Phpt1	1700008C22Rik|PHP|Php14	phosphohistidine phosphatase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-114453388-4	chr7	114453286	114453486	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011055, intron 1 of 15)	intron (NM_011055, intron 1 of 15)	38132.0	NM_011055	18576.0	Mm.430730	NM_011055	ENSMUSG00000030671	Pde3b	9830102A01Rik|AI847709	phosphodiesterase 3B, cGMP-inhibited	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124918024-6	chr6	124917867	124918067	+	898.9285890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026988)	promoter-TSS (NM_026988)	-21.0	NM_026988	69202.0	Mm.142187	NM_026988	ENSMUSG00000030122	Ptms	2610009E16Rik	parathymosin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-15671905-4	chr10	15671814	15672014	+	994.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-119863.0	NR_131087	77538.0	Mm.128235	NR_131087	ENSMUSG00000112227	C330004P14Rik	-	RIKEN cDNA C330004P14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-52423447-6	chr2	52423417	52423617	+	872.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_182994, intron 1 of 5)	intron (NM_182994, intron 1 of 5)	1357.0	NM_182994	75423.0	Mm.314378	NM_182994	ENSMUSG00000036093	Arl5a	2410015N24Rik|2810410P22Rik|AA408731|AW610751|Arl5|T25534	ADP-ribosylation factor-like 5A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-26035192-3	chr16	26035096	26035296	+	725.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173379, intron 1 of 14)	intron (NM_173379, intron 1 of 14)	70588.0	NM_173379	210530.0	Mm.326869	NM_173379	ENSMUSG00000038168	P3h2	4832416N06|AW553532|Leprel1|Mlat4	prolyl 3-hydroxylase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80263389-2	chr10	80263289	80263489	+	998.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 1 of 4)	PB1D9|SINE|Alu	-1602.0	NM_001122604	70248.0	Mm.148693	NM_133188	ENSMUSG00000069565	Dazap1	2410042M16Rik|mPrrp	DAZ associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-23597483-4	chr9	23597375	23597575	+	826.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	374399.0	NM_028472	73230.0	Mm.335020	NM_028472	ENSMUSG00000031963	Bmper	3110056H04Rik|CV-2|Crim3|Cv2	BMP-binding endothelial regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-100692481-4	chr3	100692373	100692573	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7000.0	NM_010763	17156.0	Mm.271617	NM_010763	ENSMUSG00000008763	Man1a2	AI428775|AI528764|AI854422|Man1b|PCR2	mannosidase, alpha, class 1A, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-37314537-3	chr1	37314435	37314635	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030266, intron 1 of 25)	intron (NM_030266, intron 1 of 25)	14697.0	NM_001290797	269180.0	Mm.5294	NM_030266	ENSMUSG00000026113	Inpp4a	107kDa|9630012D15|D130048C09Rik|R74740	inositol polyphosphate-4-phosphatase, type I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4086514-4	chr19	4086407	4086607	+	879.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001160253, exon 5 of 6)	exon (NM_001160253, exon 5 of 6)	2988.0	NM_013878	29866.0	Mm.46268	NM_013878	ENSMUSG00000024857	Cabp2	-	calcium binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-34482066-9	chr1	34481812	34482012	+	890.648132	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16500.0	NM_009355	21755.0	Mm.10725	NM_009355	ENSMUSG00000026125	Prss39	Tesp1	protease, serine 39	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-79434789-2	chr15	79434689	79434889	+	737.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359863, intron 2 of 10)	intron (NM_001359863, intron 2 of 10)	7029.0	NM_001289899	27373.0	Mm.30199	NM_013767	ENSMUSG00000022433	Csnk1e	AI426939|AI551861|AW457082|CK1epsilon|CKIe|KC1epsilon|tau	casein kinase 1, epsilon	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-121449191-4	chr2	121449110	121449310	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011354)	promoter-TSS (NM_011354)	12.0	NR_110986	378702.0	Mm.262252	NM_011354	ENSMUSG00000074884	Serf2	C80083|Msmac1l|m4F5rel	small EDRK-rich factor 2	protein-coding	5.85569191408563	5.56916424966393	5.68522791050485	5.55122909984025	5.71605062749437	6.00480117850517	5.91008769583036	5.38724621804956	0.105305069189064	0.681228678647409	0.995882295196263
Merged-chr3-89797376-2	chr3	89797276	89797476	+	807.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	23767.0	NM_027315	70093.0	Mm.41438	NM_027315	ENSMUSG00000042572	Ube2q1	1110002C01Rik|2310012M18Rik|AI854014|Gtap|NICE-5|PRO3094|Ube2q	ubiquitin-conjugating enzyme E2Q family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-98896814-2	chr10	98896714	98896914	+	690.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_A|LINE|L1	-17828.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-84617962-4	chr2	84617884	84618084	+	991.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355064, intron 5 of 18)	intron (NM_001355064, intron 5 of 18)	31496.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-120531332-4	chr6	120531226	120531426	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144815)	promoter-TSS (NM_144815)	-27.0	NM_144815	214932.0	Mm.255322	NM_144815	ENSMUSG00000058979	Hdhd5	A930002G03Rik|Cecr5	haloacid dehalogenase like hydrolase domain containing 5	protein-coding	0.721490567949009	0.772411304318132	1.69256350935501	0.74336643569817	1.71972649139934	0.776015441089725	1.80757976772561	1.53985152848663	1.61376061275494	0.285593443917604	0.79013454422523
Merged-chr16-95800797-3	chr16	95800694	95800894	+	951.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	97919.0	NR_040485	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-44516450-4	chr11	44516353	44516553	+	911.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2511.0	NM_028862	74315.0	Mm.156771	NM_028862	ENSMUSG00000019189	Rnf145	3732413I11Rik|TMRF1	ring finger protein 145	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70166891-4	chr8	70166855	70167055	+	819.55835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045484, intron 8 of 8)	intron (NM_001045484, intron 8 of 8)	-5453.0	NM_145597	234371.0	Mm.23488	NM_145597	ENSMUSG00000002342	Tmem161a	AI428876|BB161850|BC021367	transmembrane protein 161A	protein-coding	3.4779943523174	3.06423274173311	2.56698373206509	2.98207270550465	2.85223827000966	3.47888133062389	3.09214593450167	3.67051316356558	0.401725552322373	0.516174306836863	0.947530497770606
Merged-chr11-46849350-2	chr11	46849252	46849452	+	682.5	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	38553.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	2.07576938010294	2.35603707171201	1.38396657233819	1.8444648832702	3.32791361056163	3.66144172241171	2.90066828326258	2.48746089059803	2.43789350783551	0.0027420745803566	0.0424592424601351
Merged-chr12-70234580-2	chr12	70234464	70234664	+	792.166687	f0_c57.idr|f1_c57bl6.idr	TTS (NR_045174)	TTS (NR_045174)	6723.0	NR_045174	414124.0	Mm.416164	NR_045174	ENSMUSG00000085298	F730035M05Rik	-	RIKEN cDNA F730035M05 gene	ncRNA	3.59276402667245	3.50899841594149	3.47223765320316	4.7488608030801	4.01336327850801	2.25211204541385	1.91142690867067	2.28638367400591	-1.50201115774257	0.036182006614467	0.269746302005204
Merged-chr15-78802413-1	chr15	78802313	78802513	+	779.5	f1_balb.idr	exon (NM_130859, exon 2 of 21)	exon (NM_130859, exon 2 of 21)	629.0	NM_130859	105844.0	Mm.17629	NM_130859	ENSMUSG00000033170	Card10	AI449026|Bimp1|Carma3	caspase recruitment domain family, member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-77141786-2	chr14	77141676	77141876	+	703.166626	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-14987.0	NM_001253759	239188.0	Mm.441158	NM_172813	ENSMUSG00000022012	Enox1	B230207J08|D230005D02Rik	ecto-NOX disulfide-thiol exchanger 1	protein-coding	2.56945271453992	2.60368904837453	1.34882929874845	2.33631039928452	2.66469506379849	2.38369983723532	1.35675101116656	2.7235643673867	0.181598943168906	0.851603410405163	0.998431161219273
Merged-chr11-85792630-3	chr11	85792527	85792727	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_077059, exon 5 of 5)	non-coding (NR_077059, exon 5 of 5)	-16947.0	NR_046194	78420.0	Mm.488197	NR_046194	ENSMUSG00000085514	Bcas3os2	9530048J24Rik	breast carcinoma amplified sequence 3 opposite strand 2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-11698508-4	chr19	11698403	11698603	+	998.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033283, intron 1 of 5)	intron (NM_001033283, intron 1 of 5)	1448.0	NM_001033283	225923.0	Mm.297596	NM_001033283	ENSMUSG00000055933	Oosp3	Gm97	oocyte secreted protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-114224666-4	chr6	114224575	114224775	+	817.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172890, intron 6 of 13)	intron (NM_172890, intron 6 of 13)	-57960.0	NM_178703	232333.0	Mm.5260	NM_178703	ENSMUSG00000030310	Slc6a1	A730043E01|GABATHG|GABATR|GAT-1|Gabt|Gabt1|Gat1|XT-1|Xtrp1	solute carrier family 6 (neurotransmitter transporter, GABA), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129381271-3	chr2	129381162	129381362	+	970.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr	Intergenic	Intergenic	-10123.0	NM_008361	16176.0	Mm.222830	NM_008361	ENSMUSG00000027398	Il1b	IL-1beta|Il-1b	interleukin 1 beta	protein-coding	2.21020501625089	2.58386483663773	2.14774013840202	2.21463484843132	2.4135407365817	2.60278418483813	1.39491396430294	2.33848447236841	-0.0679774191542638	0.939204522000285	0.998431161219273
Merged-chr19-5601921-4	chr19	5601870	5602070	+	882.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026616)	promoter-TSS (NM_026616)	97.0	NM_026616	68209.0	Mm.246200	NM_026616	ENSMUSG00000024925	Rnaseh2c	1500026D16Rik|AYP1	ribonuclease H2, subunit C	protein-coding	3.1609047618496	2.719131810975	1.60306444505122	2.22571346995701	2.34244948755127	1.38573761469812	2.54527401384401	2.10379716006798	-0.852347103825575	0.358102771826226	0.855198458672582
Merged-chr10-17788078-4	chr10	17787958	17788158	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8161.0	NM_138628	378431.0	Mm.283493	NM_138628	ENSMUSG00000039891	Txlnb	2310001N14Rik|Mdp77	taxilin beta	protein-coding	6.39039949778177	5.7092733042678	6.79065247094769	6.35797570865528	5.71653117835665	5.68637753220248	5.18804810924348	5.56884863679086	-0.892273773121814	0.00082333944779248	0.0165375446896443
Merged-chr16-45371216-2	chr16	45371117	45371317	+	774.799988	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	37836.0	NM_001358443	17470.0	Mm.245851	NM_010818	ENSMUSG00000022661	Cd200	Mox2|OX2	CD200 antigen	protein-coding	1.81480129410365	2.49336791387918	2.27892295014477	2.33281711210061	1.83073800491252	2.38177482124609	1.30465296839436	3.44355644099087	0.560676592048778	0.553564429798352	0.959685872563428
Merged-chr6-25027218-2	chr6	25027118	25027318	+	764.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-71093.0	NM_177013	319832.0	Mm.127446	NM_177013	ENSMUSG00000048022	Tmem229a	6332401O19Rik	transmembrane protein 229A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-74382791-2	chr1	74382691	74382891	+	628.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013612, intron 9 of 14)	B1_Mur4|SINE|Alu	7588.0	NM_013612	18173.0	Mm.2913	NM_013612	ENSMUSG00000026177	Slc11a1	Bcg|Ity|Ity1|Lsh|Nramp|Nramp1|ity	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101011986-4	chr7	101011829	101012029	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008773)	promoter-TSS (NM_008773)	69.0	NM_001302347	18442.0	Mm.3000	NM_008773	ENSMUSG00000032860	P2ry2	P2U1|P2Y2	purinergic receptor P2Y, G-protein coupled 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-25365652-4	chr2	25365563	25365763	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033293)	promoter-TSS (NM_001033293)	0.0	NR_149315	227620.0	Mm.33797	NM_001033293	ENSMUSG00000026956	Uap1l1	5730445F03Rik	UDP-N-acteylglucosamine pyrophosphorylase 1-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-34929170-2	chr18	34929070	34929270	+	965.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144866, intron 2 of 10)	intron (NM_144866, intron 2 of 10)	2833.0	NM_144866	225363.0	Mm.329353	NM_144866	ENSMUSG00000024360	Etf1	AI463371|D6Ertd109e|ERF|ERF1|SUP45L1|TB3-1	eukaryotic translation termination factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-100609981-4	chr12	100609886	100610086	+	973.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153587, intron 5 of 17)	intron (NM_153587, intron 5 of 17)	-89164.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-100892329-3	chr13	100892231	100892431	+	892.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58904.0	NM_022885	69048.0	Mm.402215	NM_022885	ENSMUSG00000021629	Slc30a5	1810010K08Rik|AF233321|ZNT5|ZTL1|ZnT-5|Zntl1	solute carrier family 30 (zinc transporter), member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-113741631-4	chr6	113741530	113741730	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024206)	promoter-TSS (NM_024206)	-949.0	NM_024206	110379.0	Mm.29296	NM_024206	ENSMUSG00000030298	Sec13	1110003H02Rik|Sec13l1|Sec13r	SEC13 homolog, nuclear pore and COPII coat complex component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-58975641-2	chr15	58975541	58975741	+	605.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144800, intron 3 of 14)	intron (NM_144800, intron 3 of 14)	41831.0	NM_023172	66218.0	Mm.322294	NM_023172	ENSMUSG00000022354	Ndufb9	1190008J14Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-28096615-2	chr3	28096515	28096715	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008875, intron 19 of 25)	intron (NM_008875, intron 19 of 25)	112444.0	NM_008875	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-152295448-4	chr2	152295328	152295528	+	900.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024196, intron 1 of 7)	intron (NM_024196, intron 1 of 7)	1556.0	NM_024196	67231.0	Mm.288733	NM_024196	ENSMUSG00000027465	Tbc1d20	1110028I04Rik|2810442O16Rik|AI414693|bs	TBC1 domain family, member 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-31342701-4	chr15	31342595	31342795	+	990.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027496, intron 1 of 3)	intron (NM_027496, intron 1 of 3)	25064.0	NM_001357923	67434.0	Mm.102470	NM_026153	ENSMUSG00000022237	Ankrd33b	0610012A05Rik|3021401C12Rik|5730557B15Rik	ankyrin repeat domain 33B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-114016449-4	chr7	114016357	114016557	+	966.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145584, intron 6 of 15)	intron (NM_145584, intron 6 of 15)	101324.0	NM_025846	66922.0	Mm.276572	NM_025846	ENSMUSG00000055723	Rras2	2610016H24Rik|C86394|TC21	related RAS viral (r-ras) oncogene 2	protein-coding	2.97230180902466	3.52043410526849	3.63155623813174	3.59978212229244	3.08608717340862	2.88441829493105	2.78534878113394	3.90206418130192	-0.313786707526296	0.599854510502949	0.972662548474779
Merged-chr2-91986990-2	chr2	91986817	91987017	+	938.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011957, intron 9 of 11)	intron (NM_011957, intron 9 of 11)	-23354.0	NM_138306	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-43613308-4	chr11	43613212	43613412	+	881.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11750.0	NM_008375	16204.0	Mm.142716	NM_008375	ENSMUSG00000020405	Fabp6	GT|I-15P|I-BABP|ILBP|ILBP3|Illbp	fatty acid binding protein 6, ileal (gastrotropin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-143235153-4	chr5	143235059	143235259	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289590)	promoter-TSS (NM_001289590)	-4.0	NM_001289589	231866.0	Mm.55211	NM_177681	ENSMUSG00000029587	Zfp12	C530015C18|Krox-7|Zfp-12|Znf12	zinc finger protein 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-88445645-4	chr12	88445558	88445758	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361598, intron 5 of 9)	intron (NM_001361598, intron 5 of 9)	-68335.0	NR_045888	71818.0	Mm.490789	NR_045888	ENSMUSG00000113434	3200001D21Rik	-	RIKEN cDNA 3200001D21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-120019766-2	chr9	120019666	120019866	+	763.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_011724, exon 2 of 3)	exon (NM_011724, exon 2 of 3)	3832.0	NM_011724	22437.0	Mm.10117	NM_011724	ENSMUSG00000079243	Xirp1	AI415219|Cmya1	xin actin-binding repeat containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-66408601-2	chr2	66408501	66408701	+	615.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001313997, intron 1 of 26)	intron (NM_001313997, intron 1 of 26)	32236.0	NM_018733	20265.0	Mm.439704	NM_018733	ENSMUSG00000064329	Scn1a	B230332M13|Nav1.1	sodium channel, voltage-gated, type I, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122391863-4	chr5	122391760	122391960	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019824)	promoter-TSS (NM_019824)	-18.0	NM_019824	56378.0	Mm.275942	NM_019824	ENSMUSG00000029465	Arpc3	1110006A04Rik|p21-ARC|p21-Ar|p21Arc	actin related protein 2/3 complex, subunit 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27726426-2	chr2	27726326	27726526	+	658.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290482, intron 1 of 9)	(T)n|Simple_repeat|Simple_repeat	15843.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-74258869-2	chr13	74258769	74258969	+	575.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001317351, intron 2 of 9)	intron (NM_001317351, intron 2 of 9)	33462.0	NM_009644	11624.0	Mm.290446	NM_009644	ENSMUSG00000021575	Ahrr	mKIAA1234	aryl-hydrocarbon receptor repressor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-7781468-2	chr10	7781368	7781568	+	937.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346750)	promoter-TSS (NM_001346750)	-551.0	NM_001346750	215751.0	Mm.471825	NM_145418	ENSMUSG00000040006	Ginm1	AA589616	glycoprotein integral membrane 1	protein-coding	-0.71799741296482	-0.70708557642391	-0.710658121670512	-0.39858988842304	-0.717315679162312	-0.706280611168025	-0.0081218306882751	-0.712934152705969	1.42720281504518	0.625386426793862	1
Merged-chr1-72687022-2	chr1	72686922	72687122	+	646.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347063, intron 5 of 23)	L1_Mus3|LINE|L1	13542.0	NM_176980	319695.0	Mm.249056	NM_176980	ENSMUSG00000039342	Ankar	4932422E22Rik	ankyrin and armadillo repeat containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-11477929-4	chr8	11477838	11478038	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_126558)	promoter-TSS (NR_126558)	9.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-65165188-4	chr6	65165090	65165290	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20460.0	NM_019455	54486.0	Mm.410688	NM_019455	ENSMUSG00000029919	Hpgds	H-PGDS|Ptgds2	hematopoietic prostaglandin D synthase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-47272250-4	chr4	47272161	47272361	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009928, intron 14 of 39)	intron (NM_009928, intron 14 of 39)	64249.0	NM_009928	12819.0	Mm.233547	NM_009928	ENSMUSG00000028339	Col15a1	-	collagen, type XV, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-17741084-3	chr16	17740984	17741184	+	677.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18137.0	NM_001040683	94112.0	Mm.208970	NM_033609	ENSMUSG00000012114	Med15	A230074L19Rik|AW536074|Pcqap|mPcqap	mediator complex subunit 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83456627-4	chr6	83456561	83456761	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347313)	promoter-TSS (NM_001347313)	-269.0	NM_001347313	194388.0	Mm.211030	NM_183138	ENSMUSG00000034832	Tet3	B430006D22Rik|BC037432|D230004J03Rik	tet methylcytosine dioxygenase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-65849288-1	chr17	65849188	65849388	+	632.0	f1_c57bl6.idr	3' UTR (NM_009067, exon 10 of 10)	3' UTR (NM_009067, exon 10 of 10)	35635.0	NM_001198949	19765.0	Mm.17009	NM_009067	ENSMUSG00000024096	Ralbp1	RLIP76|Rip1	ralA binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-84285312-4	chr12	84285200	84285400	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029880)	promoter-TSS (NM_029880)	4.0	NM_001252626	77219.0	Mm.246127	NM_029880	ENSMUSG00000072946	Ptgr2	1810016I24Rik|9130222H03Rik|9630002F03Rik|AI838763|B830026H24Rik|PGR-2|PRG-2|Zadh1	prostaglandin reductase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-49831990-2	chr18	49831890	49832090	+	563.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1007.0	NM_001081371	240283.0	Mm.257790	NM_001081371	ENSMUSG00000037416	Dmxl1	C630007L23Rik|D030030C22	Dmx-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35919127-4	chr17	35919074	35919274	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357740)	promoter-TSS (NM_001357740)	-98.0	NM_001357740	52040.0	Mm.29385	NM_175934	ENSMUSG00000039220	Ppp1r10	2610025H06Rik|Cat53|D17Ertd808e|Fb19|Pnuts	protein phosphatase 1, regulatory subunit 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-66440161-4	chr8	66440051	66440251	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175188, intron 6 of 7)	intron (NM_175188, intron 6 of 7)	46379.0	NM_025465	66282.0	Mm.294985	NM_025465	ENSMUSG00000025591	Tma16	1810029B16Rik	translation machinery associated 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3361599-2	chr19	3361484	3361684	+	742.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013495, intron 5 of 18)	B2_Mm2|SINE|B2	-27273.0	NM_001039658	17771.0	Mm.209941	NM_010841	ENSMUSG00000024905	Tesmin	Mtl5	testis expressed metallothionein like	protein-coding	-0.305943149490757	-0.289955572513344	-0.295167541530102	0.463705957339607	-0.304938168410031	0.374646777277724	-0.294015897273789	-0.298499135192078	-0.257057555326863	0.920542752051257	1
Merged-chr4-47352425-2	chr4	47352325	47352525	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009370)	promoter-TSS (NM_009370)	-797.0	NM_001312868	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-124150145-3	chr8	124150032	124150232	+	888.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-81262.0	NM_139272	108148.0	Mm.33808	NM_139272	ENSMUSG00000089704	Galnt2	AI480629	polypeptide N-acetylgalactosaminyltransferase 2	protein-coding	3.35275169908058	3.22169447292023	4.40846553295381	4.03894148387354	1.74151744199606	2.25324290308489	1.3570101786256	1.29858636812374	-4.09926039221746	1.79458395920503e-06	0.000106240551032279
Merged-chr5-134102086-4	chr5	134102004	134102204	+	976.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030719, intron 1 of 8)	intron (NM_030719, intron 1 of 8)	2356.0	NM_030719	80909.0	Mm.45218	NM_030719	ENSMUSG00000015944	Gatsl2	7530428J21Rik|AW742413|Castor2|Gats|Gatsl1	GATS protein-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-87459773-2	chr6	87459673	87459873	+	810.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_104483, exon 11 of 11)	non-coding (NR_104483, exon 11 of 11)	30779.0	NM_009756	12154.0	Mm.483321	NM_009756	ENSMUSG00000030046	Bmp10	b2b2711Clo	bone morphogenetic protein 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-115046627-4	chr8	115046544	115046744	+	906.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019573, intron 8 of 8)	intron (NM_019573, intron 8 of 8)	606992.0	NM_019573	80707.0	Mm.440420	NM_019573	ENSMUSG00000004637	Wwox	5330426P09Rik|9030416C10Rik|WOX1	WW domain-containing oxidoreductase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-79588455-2	chr3	79588355	79588555	+	589.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2882.0	NM_001356326	67738.0	Mm.295252	NM_026352	ENSMUSG00000027804	Ppid	4930564J03Rik|CYP-40|Ppidl|Ppif	peptidylprolyl isomerase D (cyclophilin D)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-85029859-3	chr6	85029759	85029959	+	976.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177077, intron 1 of 21)	intron (NM_177077, intron 1 of 21)	39654.0	NM_177077	75914.0	Mm.159621	NM_177077	ENSMUSG00000033769	Exoc6b	4930569O18Rik|G430127E12Rik|Sec15b|Sec15l2|mKIAA0919	exocyst complex component 6B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-37595379-4	chr13	37595252	37595452	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-230686.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	4.76252548039047	4.66102227240473	4.89159553858829	4.88382377651212	4.76342914087165	4.74830253487266	5.35077545762048	6.06775710590619	0.644412892900279	0.077841277983721	0.424632682956947
Merged-chr10-67261519-2	chr10	67261419	67261619	+	747.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB-int|LTR|ERVL-MaLR	23762.0	NM_001036293	641340.0	Mm.136223	NM_001036293	ENSMUSG00000075000	Nrbf2	NRBF-2	nuclear receptor binding factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126598478-4	chr8	126598374	126598574	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5038.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	4.22659904647344	3.72807763605106	3.68657233154753	4.38890265183692	4.21720884495609	3.56330240648688	3.09410672164631	4.27457236861324	-0.228063219476325	0.645857496534346	0.984116759910594
Merged-chr1-190169518-3	chr1	190169393	190169593	+	935.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360827)	promoter-TSS (NM_001360827)	22.0	NM_001360827	19130.0	Mm.132579	NM_008937	ENSMUSG00000010175	Prox1	A230003G05Rik|PROX-1	prospero homeobox 1	protein-coding	2.14217959440378	1.04450736808165	2.13417763841692	1.25157815572616	1.56681525287269	1.78814608108641	1.01954061112198	3.213719842322	1.04764997290017	0.365013306805665	0.861036332257394
Merged-chr11-43682556-4	chr11	43682480	43682680	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001164231, exon 1 of 4)	exon (NM_001164231, exon 1 of 4)	582.0	NM_001164231	70802.0	Mm.397449	NM_027557	ENSMUSG00000044950	Pwwp2a	4631424J17Rik|AI891583|AU024105|D930040F23Rik	PWWP domain containing 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-108459879-4	chr4	108459774	108459974	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175472, intron 1 of 30)	CpG	448.0	NM_175472	230594.0	Mm.25181	NM_175472	ENSMUSG00000034610	Zcchc11	6030404K05Rik|9230115F04Rik|PPAPD3|mKIAA0191	zinc finger, CCHC domain containing 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140207307-4	chr5	140207265	140207465	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152617, intron 10 of 16)	intron (NR_152617, intron 10 of 16)	-32447.0	NM_001359027	17120.0	Mm.27250	NM_010752	ENSMUSG00000029554	Mad1l1	AI173502|AW550425|Mad1	MAD1 mitotic arrest deficient 1-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-75720138-2	chr2	75720038	75720238	+	906.6666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-15475.0	NM_010902	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-94075034-3	chr11	94074934	94075134	+	988.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025430, intron 5 of 25)	MTEb|LTR|ERVL-MaLR	30829.0	NM_001025429	70834.0	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129065964-4	chr2	129065854	129066054	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027192)	promoter-TSS (NM_027192)	7.0	NM_027192	69737.0	Mm.33909	NM_027192	ENSMUSG00000027394	Ttl	2410003M22Rik|2700049H19Rik|AI848570	tubulin tyrosine ligase	protein-coding	2.35471113034605	1.26959326709696	2.26872207680093	1.65038700918547	1.73902102172112	2.91242281890729	2.03538550578333	1.97147696742365	0.675596814943245	0.4941420158761	0.935679785535167
Merged-chr3-99208919-1	chr3	99208819	99209019	+	544.0	f1_c57bl6.idr	intron (NM_027462, intron 4 of 5)	intron (NM_027462, intron 4 of 5)	-9466.0	NR_105852	102465230.0		NR_105852	ENSMUSG00000098918	Mir6481	Gm27744|mmu-mir-6481	microRNA 6481	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-88244656-3	chr7	88244540	88244740	+	883.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33445.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-79363131-2	chr15	79363028	79363228	+	802.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172608, intron 8 of 8)	intron (NM_172608, intron 8 of 8)	12172.0	NR_035464	100316695.0		NR_035464	ENSMUSG00000088901	Mir1943	mir-1943|mmu-mir-1943	microRNA 1943	ncRNA	1.58437087758656	1.36138313096474	1.31049373720544	0.970593377253402	1.08390828109001	0.804436110141849	0.791040835018615	1.77804625399414	-0.477258912554464	0.728635185911065	0.998431161219273
Merged-chr4-32560015-4	chr4	32559926	32560126	+	913.7666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_026843, exon 5 of 5)	non-coding (NR_026843, exon 5 of 5)	11636.0	NR_026843	414068.0	Mm.389550	NR_026843	ENSMUSG00000086150	Bach2os	-	BTB and CNC homology 2, opposite strand	ncRNA	0.970371630599321	0.350965848693853	0.341193593402146	0.333558122181989	1.37205425948676	0.353150105076225	1.11925189322641	0.334898262967686	1.7206621894901	0.372419770390387	1
Merged-chr3-142269353-2	chr3	142269253	142269453	+	746.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001190854, intron 8 of 12)	intron (NM_001190854, intron 8 of 12)	-99928.0	NM_001277216	12167.0	Mm.39089	NM_007560	ENSMUSG00000052430	Bmpr1b	AI385617|ALK-6|AV355320|Acvrlk6|Alk6|BMPR-1B|BMPR-IB|CFK-43a|SKR6	bone morphogenetic protein receptor, type 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-99616372-4	chr12	99616291	99616491	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_136760, intron 2 of 3)	MLTR14|LTR|ERV1	11583.0	NR_045288	73457.0	Mm.383439	NR_045288	ENSMUSG00000100211	1700064M15Rik	-	RIKEN cDNA 1700064M15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-54504202-4	chr13	54504075	54504275	+	991.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176987, intron 1 of 9)	CpG	370.0	NM_176987	319719.0	Mm.376151	NM_176987	ENSMUSG00000043183	Simc1	4732471D19Rik	SUMO-interacting motifs containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-35114014-4	chr9	35113946	35114146	+	924.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009178, intron 1 of 10)	intron (NM_009178, intron 1 of 10)	-2682.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-59656781-4	chr13	59656667	59656867	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001035122, intron 3 of 9)	RMER15|LTR|ERVL	19017.0	NM_001035122	105348.0	Mm.171335	NM_027307	ENSMUSG00000021556	Golm1	2310001L02Rik|AW125446|D030064E01Rik|GP73|Golph2|PSEC0257	golgi membrane protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-72273975-3	chr8	72273904	72274104	+	835.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33986.0	NM_007456	11767.0	Mm.290086	NM_007456	ENSMUSG00000003033	Ap1m1	AA408894|AP47|Adtm1A|Cltnm|mu1A	adaptor-related protein complex AP-1, mu subunit 1	protein-coding	1.61063316068073	1.27449608286534	1.99273577153157	1.18091587752291	2.13819163797231	3.13490057910577	3.61814138209298	3.69649988497374	3.6891962820006	0.000104611526130835	0.00318022573610918
Merged-chr18-60809976-5	chr18	60809854	60810054	+	820.070251	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042605, intron 4 of 8)	intron (NM_001042605, intron 4 of 8)	-2122.0	NR_039567	100628611.0		NR_039567	ENSMUSG00000093327	Mir5107	mir-5107|mmu-mir-5107|mu-mir-5107	microRNA 5107	ncRNA	3.15040502216976	3.14184801791636	2.58704034754012	1.30884081597222	2.81780213668447	2.29970947570436	2.21857994902783	1.31498579743653	-0.903939214984449	0.346718548939431	0.847437850938575
Merged-chr15-103332558-2	chr15	103332458	103332658	+	772.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356627, intron 2 of 7)	intron (NM_001356627, intron 2 of 7)	1780.0	NM_001356627	29813.0	Mm.14099	NM_013866	ENSMUSG00000000552	Zfp385a	Hzf|Zfp385|Znf385a	zinc finger protein 385A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5859249-2	chr19	5859149	5859349	+	561.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026169, intron 9 of 10)	B1_Mus1|SINE|Alu	-13769.0	NR_003513	66961.0	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89909228-4	chr3	89909148	89909348	+	995.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010559, intron 1 of 9)	intron (NM_010559, intron 1 of 9)	3948.0	NM_001310676	16194.0	Mm.2856	NM_010559	ENSMUSG00000027947	Il6ra	CD126|IL-6R|IL-6R-alpha|IL-6RA|Il6r	interleukin 6 receptor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-39462992-4	chr6	39462890	39463090	+	959.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172477, exon 19 of 19)	3' UTR (NM_172477, exon 19 of 19)	42612.0	NR_152168	621427.0	Mm.389742	NR_152168	ENSMUSG00000068601	Gm10244	Anmkrn1	predicted gene 10244	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-88904955-8	chr6	88904872	88905072	+	952.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011906, intron 1 of 11)	intron (NM_011906, intron 1 of 11)	2721.0	NM_011906	24100.0	Mm.284480	NM_011906	ENSMUSG00000002871	Tpra1	40kDa|Gpr175|Tpra40	transmembrane protein, adipocyte asscociated 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-123371626-4	chr7	123371525	123371725	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-1710.0	NM_001316713	70497.0	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134421906-1	chr6	134421806	134422006	+	731.0	f1_c57bl6.idr	intron (NM_001355686, intron 1 of 5)	intron (NM_001355686, intron 1 of 5)	7478.0	NM_001355686	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	0.35661278852719	0.40040763506008	1.71706401911309	0.375467827008142	0.877906997085592	0.403494709377146	0.389587014181749	1.58330968461026	0.0870429436930481	0.978616340206141	0.998431161219273
Merged-chr1-178341005-2	chr1	178340905	178341105	+	874.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-3190.0	NR_149827	51810.0	Mm.86589	NM_016805	ENSMUSG00000039630	Hnrnpu	AA408410|AI256620|AL024194|AL024437|AW557595|C86794|Hnrpu|SAFA|Sp120|hnRNP U	heterogeneous nuclear ribonucleoprotein U	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-62847974-4	chr11	62847876	62848076	+	749.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033669, intron 1 of 12)	intron (NM_001033669, intron 1 of 12)	853.0	NM_001291441	213980.0	Mm.482259	NM_001033669	ENSMUSG00000090173	Fbxw10	Fbw10|HREP|SM25H2|SM2SH2	F-box and WD-40 domain protein 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-28621177-4	chr6	28621083	28621283	+	744.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019776, intron 10 of 23)	intron (NM_019776, intron 10 of 23)	140835.0	NM_019776	56463.0	Mm.439987	NM_019776	ENSMUSG00000001424	Snd1	AL033314|Tudor-SN	staphylococcal nuclease and tudor domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5629530-2	chr17	5629430	5629630	+	643.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	136930.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33574796-2	chr16	33574696	33574896	+	717.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083902, intron 4 of 11)	RLTR20A4|LTR|ERVK	56201.0	NM_001083902	171286.0	Mm.35253	NM_134251	ENSMUSG00000035506	Slc12a8	CCC9|E330020C02Rik	solute carrier family 12 (potassium/chloride transporters), member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165819995-2	chr2	165819895	165820095	+	757.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027230, intron 13 of 23)	intron (NM_027230, intron 13 of 23)	38178.0	NM_001252585	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-61894214-4	chr8	61894127	61894327	+	830.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293772, intron 1 of 21)	intron (NM_001293772, intron 1 of 21)	8463.0	NM_001081390	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35233682-2	chr17	35233580	35233780	+	987.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_010909, intron 2 of 3)	intron (NM_010909, intron 2 of 3)	-1330.0	NM_001347351	66237.0	Mm.396107	NM_023179	ENSMUSG00000024403	Atp6v1g2	1500002D01Rik|Atp6g2|NG38|VAG2	ATPase, H+ transporting, lysosomal V1 subunit G2	protein-coding	2.72997887546112	1.31505279092269	1.75793445147772	2.73983383388414	2.18165719812121	2.6786440579052	2.58610415033726	1.2567224232381	-0.00540479795803438	0.995784658491246	0.998677473898728
Merged-chr17-23967207-4	chr17	23967115	23967315	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8015.0	NM_013921	30943.0	Mm.142568	NM_013921	ENSMUSG00000024124	Prss30	2010015P21Rik|Disp|Disp1|Tmprss8	protease, serine 30	protein-coding	5.70633246405247	5.66088987226575	5.94868140523197	6.02907138196404	6.51715498067844	5.99170099103202	6.22238359231716	6.15907316613276	0.435939977161198	0.060743145942681	0.364641226661251
Merged-chr3-126403009-2	chr3	126402908	126403108	+	703.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173451, intron 1 of 1)	intron (NM_173451, intron 1 of 1)	39156.0	NM_173451	271970.0	Mm.317021	NM_173451	ENSMUSG00000046561	Arsj	9330196J05Rik|D830047F08	arylsulfatase J	protein-coding	0.820346179653178	0.457415812440367	0.449506988920701	1.08856887160327	0.434710199954034	1.09503071080033	0.636626529433572	0.886781156757987	0.272958647249751	0.872501807368095	1
Merged-chr10-81172701-2	chr10	81172601	81172801	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3930.0	NM_007907	13629.0	Mm.2903	NM_007907	ENSMUSG00000034994	Eef2	Ef-2	eukaryotic translation elongation factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-88849304-3	chr6	88849230	88849430	+	735.583313	f1_balb.idr|f1_c57bl6.idr	exon (NM_176973, exon 3 of 8)	exon (NM_176973, exon 3 of 8)	6476.0	NR_045880	100038356.0	Mm.442704	NR_045880	ENSMUSG00000085828	Gm15612	-	predicted gene 15612	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-85670497-3	chr15	85670326	85670526	+	887.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-33347.0	NR_110483	102800312.0	Mm.33117	NR_110483		Lncppara	Lincppara|Mirlet7bhg|linc-Ppara	long noncoding RNA near Ppara	ncRNA	0.140143730260186	0.162157638761649	0.154995588067406	0.821386266487468	0.659127807785906	0.939950756617286	0.156579241945343	0.150410458985871	0.963098324079631	0.646937403642048	1
Merged-chr2-157564979-2	chr2	157564879	157565079	+	609.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016916, intron 1 of 1)	intron (NM_016916, intron 1 of 1)	1382.0	NM_001355426	53619.0	Mm.480461	NM_016916	ENSMUSG00000067787	Blcap	AI462828|Bc10	bladder cancer associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45150521-4	chr7	45150415	45150615	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145954, intron 1 of 16)	intron (NM_145954, intron 1 of 16)	-3788.0	NM_029406	68845.0	Mm.181689	NM_029406	ENSMUSG00000003423	Pih1d1	1110061L23Rik|4933413A04Rik|Nop17	PIH1 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-17005094-4	chr17	17005023	17005223	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58980.0	NM_001005358	449000.0	Mm.483718	NM_001005358	ENSMUSG00000096696	Zfp960	-	zinc finger protein 960	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-34352178-3	chr6	34352070	34352270	+	624.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1976.0	NM_008012	14187.0	Mm.5378	NM_008012	ENSMUSG00000029762	Akr1b8	FR-1|Fgfrp|Fgrp	aldo-keto reductase family 1, member B8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-158763338-2	chr2	158763238	158763438	+	631.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001159662, exon 11 of 11)	3' UTR (NM_001159662, exon 11 of 11)	-4761.0	NM_027975	71878.0	Mm.85162	NM_027975	ENSMUSG00000027654	Fam83d	2310007D09Rik|BB104611	family with sequence similarity 83, member D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-42144749-4	chr19	42144661	42144861	+	915.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2628.0	NM_183195	277010.0	Mm.206250	NM_183195	ENSMUSG00000044345	Marveld1	AI504298|Mrvldc1	MARVEL (membrane-associating) domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-86820890-2	chr8	86820790	86820990	+	787.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	64368.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-60932073-5	chr10	60932056	60932256	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033616, intron 1 of 2)	intron (NR_033616, intron 1 of 2)	5976.0	NR_033616	73616.0	Mm.159038	NR_033616	ENSMUSG00000037247	Pldi	1700125F08Rik|Poldi	polymorphic derived intron containing	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-10232647-3	chr17	10232552	10232752	+	795.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021881, intron 4 of 6)	intron (NM_021881, intron 4 of 6)	86709.0	NM_021881	19317.0	Mm.130694	NM_021881	ENSMUSG00000062078	Qk	1110003F05Rik|1500005P18|QkI|l(17)-1Wis|l17Wis1	quaking	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-116203130-2	chr10	116203030	116203230	+	675.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358484, intron 5 of 12)	L1_Mus3|LINE|L1	25779.0	NM_001161840	19279.0	Mm.336316	NM_011217	ENSMUSG00000020151	Ptprr	Gmcp1|PTP-SL|PTPBR7|RPTPRR|mPTP213	protein tyrosine phosphatase, receptor type, R	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-122738462-4	chr2	122738322	122738522	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019788)	promoter-TSS (NM_019788)	-83.0	NM_019788	18457.0	Mm.268921	NM_019788	ENSMUSG00000005804	Bloc1s6	BLOC-1|Pldn|Stx13bp1|pa	biogenesis of lysosomal organelles complex-1, subunit 6, pallidin	protein-coding	5.02832906836814	5.18726641063589	4.79397680411706	5.07897644757855	4.60422976075978	5.25691925745731	4.4790849828409	5.03594967101109	-0.185360782293702	0.577786467327698	0.96585843058813
Merged-chr8-94089890-4	chr8	94089816	94090016	+	871.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026116, intron 2 of 16)	intron (NM_026116, intron 2 of 16)	8895.0	NM_026116	67378.0	Mm.292107	NM_026116	ENSMUSG00000031755	Bbs2	2410125H22Rik|AI447581	Bardet-Biedl syndrome 2 (human)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-132048355-3	chr2	132048240	132048440	+	782.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER5|LTR|ERV1	-18352.0	NM_175445	215653.0	Mm.204737	NM_175445	ENSMUSG00000027339	Rassf2	3830431H01Rik|9030412M04Rik|AI852669|AW495050	Ras association (RalGDS/AF-6) domain family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-49135251-1	chr7	49135151	49135351	+	546.0	f0_balb.idr	intron (NR_154465, intron 3 of 3)	ORR1E|LTR|ERVL-MaLR	26907.0	NR_154465	108167511.0	Mm.400599	NR_154465		9130015G15Rik	-	RIKEN cDNA 9130015G15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-127895129-4	chr3	127895025	127895225	+	997.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027482, intron 1 of 1)	intron (NM_027482, intron 1 of 1)	1198.0	NM_027482	70617.0	Mm.317049	NM_027482	ENSMUSG00000050549	Fam241a	2700063A17Rik|5730508B09Rik|C80506	family with sequence similarity 241, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-58214000-4	chr15	58213874	58214074	+	904.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026346, intron 1 of 8)	intron (NM_026346, intron 1 of 8)	918.0	NM_026346	67731.0	Mm.25683	NM_026346	ENSMUSG00000022358	Fbxo32	4833442G10Rik|AI430017|ATROGIN1|Gm20361|MAFbx	F-box protein 32	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-96999814-2	chr5	96999714	96999914	+	592.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_080708, intron 1 of 15)	intron (NM_080708, intron 1 of 15)	2125.0	NM_080708	140780.0	Mm.281490	NM_080708	ENSMUSG00000034663	Bmp2k	4933417M22Rik|AA673486|AV128808|BIKE	BMP2 inducible kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-73660472-2	chr12	73660372	73660572	+	587.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008856, intron 2 of 13)	intron (NM_008856, intron 2 of 13)	75676.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-108621392-1	chr4	108621292	108621492	+	619.0	f1_c57bl6.idr	intron (NM_177045, intron 1 of 24)	intron (NM_177045, intron 1 of 24)	1436.0	NM_177045	319965.0	Mm.151129	NM_177045	ENSMUSG00000028582	Cc2d1b	A830039B04Rik|Freud2	coiled-coil and C2 domain containing 1B	protein-coding	-0.126265987576997	-0.743836538828336	-0.746931692106864	-0.587948935479154	-0.609450489511631	-0.743137584058364	-0.746249826324019	-0.748897671428817	-2.23520371950667	0.417635882751648	1
Merged-chr6-29649950-3	chr6	29649831	29650031	+	676.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40082.0	NM_001347079	320938.0	Mm.276381	NM_177296	ENSMUSG00000012535	Tnpo3	5730544L10Rik|C430013M08Rik|C81142|D6Ertd313e|Trn-SR|mKIAA4133	transportin 3	protein-coding	1.56762497400637	1.65585252392429	0.934307164146216	1.42481247904561	1.36375956403475	1.89999782069846	0.937772296103943	1.55679015465678	0.225268392314145	0.858254315638014	0.998431161219273
Merged-chr8-119834046-3	chr8	119833913	119834113	+	722.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028071, intron 2 of 3)	(TG)n|Simple_repeat|Simple_repeat	6566.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-17435613-4	chr14	17435521	17435721	+	842.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D11|SINE|Alu	-225339.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-152293289-1	chr2	152293189	152293389	+	574.5	f0_balb.idr	promoter-TSS (NM_024196)	promoter-TSS (NM_024196)	-583.0	NM_024196	67231.0	Mm.288733	NM_024196	ENSMUSG00000027465	Tbc1d20	1110028I04Rik|2810442O16Rik|AI414693|bs	TBC1 domain family, member 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-124279654-4	chr9	124279417	124279617	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33177.0	NM_001243118	630836.0	Mm.458553	NM_001243117	ENSMUSG00000074829	2010315B03Rik	BC029716	RIKEN cDNA 2010315B03 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122932624-4	chr8	122932505	122932705	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 2 of 12)	intron (NM_001081379, intron 2 of 12)	84231.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-84884800-2	chr12	84884700	84884900	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8305.0	NM_013589	16997.0	Mm.3900	NM_013589	ENSMUSG00000002020	Ltbp2	AW208642	latent transforming growth factor beta binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-108293611-2	chr9	108293511	108293711	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025449, intron 2 of 5)	intron (NM_025449, intron 2 of 5)	3154.0	NM_025449	66257.0	Mm.10407	NM_025449	ENSMUSG00000032606	Nicn1	1500032A17Rik	nicolin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-6154282-4	chr7	6154171	6154371	+	989.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013012, intron 1 of 2)	intron (NM_001013012, intron 1 of 2)	1700.0	NM_001013012	67109.0	Mm.3254	NM_001013012	ENSMUSG00000046792	Zfp787	2210018M03Rik|Znf787	zinc finger protein 787	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-76902928-3	chr8	76902835	76903035	+	838.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083906, intron 1 of 8)	intron (NM_001083906, intron 1 of 8)	427.0	NM_001083906	110784.0	Mm.324393	NM_001083906	ENSMUSG00000031618	Nr3c2	MR|Mlr	nuclear receptor subfamily 3, group C, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-34547641-2	chr5	34547541	34547741	+	691.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145858, intron 1 of 12)	B3|SINE|B2	-1935.0	NM_001145859	24055.0	Mm.5012	NM_011893	ENSMUSG00000054520	Sh3bp2	3BP2	SH3-domain binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-90360111-2	chr13	90360020	90360220	+	695.5	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	270453.0	NM_025335	66074.0	Mm.241387	NM_025335	ENSMUSG00000012422	Tmem167	0610041E09Rik|5730424F14Rik|AU041184|AW537806|Gm10085|Tmem167a	transmembrane protein 167	protein-coding	3.71610076592567	3.27377711813079	2.99673509340309	2.90893257911522	2.25262816390995	1.45500413972266	2.46196206315135	1.35960643282582	-2.54135081734642	0.00205040105683185	0.0340102007555786
Merged-chr2-166448510-3	chr2	166448389	166448589	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_015558, exon 1 of 3)	non-coding (NR_015558, exon 1 of 3)	1038.0	NR_015558	319684.0	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95819457-4	chr3	95819362	95819562	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081293)	promoter-TSS (NM_001081293)	-509.0	NM_001081293	75137.0	Mm.196275	NM_028328	ENSMUSG00000028106	Rprd2	2810036A19Rik|4930535B03Rik|6720469I21Rik|AL022841|AL022940|AU021304|BB077382|mKIAA0460	regulation of nuclear pre-mRNA domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-134551863-1	chr5	134551763	134551963	+	754.0	f0_c57.idr	intron (NM_001039162, intron 1 of 15)	intron (NM_001039162, intron 1 of 15)	571.0	NM_001039162	269713.0	Mm.255138	NM_009990	ENSMUSG00000063146	Clip2	B230327O20|CLIP-115|Clip1|Cyln2|WSCR4|mKIAA0291|wbscr4	CAP-GLY domain containing linker protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-127151315-4	chr4	127151201	127151401	+	981.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17903.0	NM_198618	242667.0	Mm.331885	NM_198618	ENSMUSG00000042388	Dlgap3	BC058433|DAP-3|DAP3|Prpl8|Sapap3	DLG associated protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44316651-4	chr9	44316568	44316768	+	907.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359259, intron 4 of 13)	intron (NM_001359259, intron 4 of 13)	3614.0	NM_001359259	71764.0	Mm.491174	NM_027909	ENSMUSG00000032120	C2cd2l	1300006O23Rik|Tmem24	C2 calcium-dependent domain containing 2-like	protein-coding	2.93778124572242	1.86670642642577	2.8419778245929	2.2991685994072	2.96148882635228	2.29927734849041	3.12583059703488	2.95370254569926	0.597759347903791	0.427521857021392	0.902392427013133
Merged-chr1-45819703-3	chr1	45819655	45819855	+	727.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028599, intron 17 of 20)	intron (NM_028599, intron 17 of 20)	24589.0	NM_028599	73674.0	Mm.270376	NM_028599	ENSMUSG00000025995	Wdr75	1300003A18Rik|2410118I19Rik|C77608	WD repeat domain 75	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95173622-3	chr3	95173526	95173726	+	841.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_073549, exon 19 of 19)	non-coding (NR_073549, exon 19 of 19)	9287.0	NM_011351	20360.0	Mm.23662	NM_011351	ENSMUSG00000038777	Sema6c	Semay|mKIAA1869	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-82865382-2	chr7	82865282	82865482	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1951.0	NM_175366	108797.0	Mm.306789	NM_175366	ENSMUSG00000057706	Mex3b	4931439A04Rik|M-04814|Rkhd3|mKIAA2009	mex3 RNA binding family member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-31742654-3	chr10	31742580	31742780	+	782.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013411, intron 5 of 6)	intron (NM_001013411, intron 5 of 6)	-132955.0	NM_001146349	268291.0	Mm.295212	NM_001146349	ENSMUSG00000063760	Rnf217	AU016819|Ibrdc1	ring finger protein 217	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-98360242-4	chr7	98360128	98360328	+	977.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168540, intron 1 of 2)	intron (NM_001168540, intron 1 of 2)	1060.0	NM_001168540	244152.0	Mm.25317	NM_001024619	ENSMUSG00000049580	Tsku	9530051K01Rik|E2ig4|Lrrc54|Tsk	tsukushi, small leucine rich proteoglycan	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-84109868-2	chr17	84109768	84109968	+	654.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31208.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46036571-2	chr19	46036471	46036671	+	657.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113408, intron 1 of 10)	B3A|SINE|B2	499.0	NM_001360336	16825.0	Mm.327442	NM_010697	ENSMUSG00000025223	Ldb1	CLIM2|NLI	LIM domain binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34009341-1	chr17	34009241	34009441	+	567.0	f1_c57bl6.idr	Intergenic	Intergenic	-8994.0	NM_001347346	14972.0	Mm.422886	NM_001001892	ENSMUSG00000061232	H2-K1	H-2K|H-2K(d)|H2-K|K-f	histocompatibility 2, K1, K region	protein-coding	1.60974268001945	1.17188399600427	0.598606347441976	1.31178452490169	1.23813159003228	0.612950704783859	0.601208377290872	0.591042073540106	-1.91602894393869	0.245805044262279	0.74520645449897
Merged-chr16-57559186-3	chr16	57559093	57559293	+	967.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177871, intron 1 of 1)	intron (NM_001177871, intron 1 of 1)	9951.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-113622324-4	chr6	113622231	113622431	+	937.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1690.0	NM_009507	22346.0	Mm.29407	NM_009507	ENSMUSG00000033933	Vhl	Vhlh	von Hippel-Lindau tumor suppressor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-112670855-4	chr12	112670752	112670952	+	742.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001331107, intron 2 of 13)	intron (NM_001331107, intron 2 of 13)	3424.0	NM_001165894	11651.0	Mm.6645	NM_009652	ENSMUSG00000001729	Akt1	Akt|LTR-akt|PKB|PKB/Akt|PKBalpha|Rac	thymoma viral proto-oncogene 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-46527604-2	chr18	46527504	46527704	+	658.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1633.0	NM_173423	240263.0	Mm.38249	NM_173423	ENSMUSG00000033319	Fem1c	2610312A07Rik|3632443A22Rik|AI646567	fem-1 homolog c (C.elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-164656027-4	chr2	164655936	164656136	+	888.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039501)	promoter-TSS (NM_001039501)	-10.0	NM_001039501	629756.0	Mm.189007	NM_001039501	ENSMUSG00000070529	Wfdc10	Gm120	WAP four-disulfide core domain 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-75458356-4	chr1	75458249	75458449	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183022, intron 1 of 9)	intron (NM_183022, intron 1 of 9)	7839.0	NM_183022	241118.0	Mm.110790	NM_183022	ENSMUSG00000033007	Asic4	Accn4|BNAC4	acid-sensing (proton-gated) ion channel family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-34485324-2	chr5	34485224	34485424	+	722.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001243123, intron 20 of 20)	intron (NM_001243123, intron 20 of 20)	28655.0	NM_139064	231130.0	Mm.28615	NM_139064	ENSMUSG00000059866	Tnip2	1810020H16Rik|ABIN-2|AI428870	TNFAIP3 interacting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-79545659-2	chr15	79545559	79545759	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001040187, intron 1 of 12)	PB1D10|SINE|Alu	900.0	NM_199079	67040.0	Mm.29644	NM_152806	ENSMUSG00000055065	Ddx17	2610007K22Rik|A430025E01Rik|AI047725|C80929|Gm926|p72	DEAD (Asp-Glu-Ala-Asp) box polypeptide 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-74988287-4	chr11	74988178	74988378	+	973.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001002764, intron 9 of 18)	intron (NM_001002764, intron 9 of 18)	62406.0	NM_001002764	103677.0	Mm.288460	NM_001002764	ENSMUSG00000038290	Smg6	AI317223|AU041178	Smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-80630488-4	chr1	80630382	80630582	+	917.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175291, intron 3 of 55)	intron (NM_175291, intron 3 of 55)	34870.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-107919766-4	chr13	107919659	107919859	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29695.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-42436169-4	chr17	42436069	42436269	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355270, intron 2 of 2)	intron (NM_001355270, intron 2 of 2)	119569.0	NM_001355270	627626.0	Mm.390999	NM_028474	ENSMUSG00000042256	Ptchd4	3110082D06Rik|Gm321	patched domain containing 4	protein-coding	5.33311802696824	5.23033117426254	5.18262843703815	5.7309328683808	5.50663359667493	5.80130924647573	5.21859179578688	5.73322978813946	0.218020581918947	0.438572696199591	0.90901679298676
Merged-chr10-84388861-3	chr10	84388773	84388973	+	980.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004363, intron 4 of 6)	intron (NM_001004363, intron 4 of 6)	51598.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90452300-2	chr2	90452211	90452411	+	668.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 13 of 23)	intron (NM_008982, intron 13 of 23)	26863.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-23887534-4	chr13	23887433	23887633	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_121611, intron 10 of 12)	intron (NR_121611, intron 10 of 12)	17260.0	NM_001170638	20504.0	Mm.2656	NM_009198	ENSMUSG00000021335	Slc17a1	NAPI-1|Napi1|Npt1	solute carrier family 17 (sodium phosphate), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-67163957-2	chr18	67163857	67164057	+	559.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177137, intron 4 of 11)	MTE2b|LTR|ERVL-MaLR	30397.0	NM_010307	14680.0	Mm.440746	NM_010307	ENSMUSG00000024524	Gnal	2610011C15Rik|9630020G10Rik|Galphaolf|Gna10|Golf	guanine nucleotide binding protein, alpha stimulating, olfactory type	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-12695251-2	chr5	12695151	12695351	+	545.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	312085.0	NM_028882	108151.0	Mm.89313	NM_028882	ENSMUSG00000040254	Sema3d	4631426B19Rik	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-158122688-2	chr2	158122589	158122789	+	615.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009373, intron 10 of 12)	intron (NM_009373, intron 10 of 12)	23703.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	1.16403843153224	0.783235515327917	1.26857971863637	1.45036975801882	1.28182335880757	0.785832973143986	1.61154027554443	0.948198388146925	0.0552586732936057	0.96825025441849	0.998431161219273
Merged-chr2-168120924-2	chr2	168120824	168121024	+	675.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33589.0	NR_040327	77017.0	Mm.407822	NR_040327	ENSMUSG00000087648	E130018N17Rik	-	RIKEN cDNA E130018N17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-62777682-2	chr9	62777582	62777782	+	810.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_176922, intron 28 of 29)	intron (NM_176922, intron 28 of 29)	33966.0	NM_010193	14155.0	Mm.24069	NM_010193	ENSMUSG00000032244	Fem1b	mKIAA0396	feminization 1 homolog b (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-79619900-2	chr8	79619800	79620000	+	723.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	-19776.0	NM_001256033	73945.0	Mm.34348	NM_001081164	ENSMUSG00000036990	Otud4	4930431L18Rik|AI449692|D8Ertd69e|mKIAA1046	OTU domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6042381-2	chr19	6042278	6042478	+	707.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4198.0	NM_028769	74126.0	Mm.149870	NM_028769	ENSMUSG00000024807	Syvn1	1200010C09Rik|AW211966|C85322|D530017H19Rik|Hrd1	synovial apoptosis inhibitor 1, synoviolin	protein-coding	0.330896673716448	0.730543224814972	0.347513942463859	0.341295234774839	0.845524678673105	1.12615730554555	0.349285755403823	0.913812970162777	2.67418857818055	0.159030289427224	1
Merged-chr17-83709742-4	chr17	83709671	83709871	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054082, intron 2 of 16)	intron (NM_054082, intron 2 of 16)	3608.0	NM_001171052	116871.0	Mm.277668	NM_054082	ENSMUSG00000055817	Mta3	1110002J22Rik|mKIAA1266	metastasis associated 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-109343766-4	chr13	109343677	109343877	+	950.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011056, intron 3 of 16)	intron (NM_011056, intron 3 of 16)	19033.0	NR_030644	100124489.0		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA	1.58279520903247	0.50871559982329	0.707161599184644	1.3180476220728	1.14602358127466	0.511229167180941	0.499954535870459	0.490187870114162	-1.85719150817525	0.279915446353386	0.783093158405392
Merged-chr11-47221685-4	chr11	47221592	47221792	+	926.525024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011891, intron 2 of 7)	MTE2b|LTR|ERVL-MaLR	157610.0	NM_011891	24052.0	Mm.338890	NM_011891	ENSMUSG00000020354	Sgcd	35kDa|delta-SG	sarcoglycan, delta (dystrophin-associated glycoprotein)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-57735958-4	chr3	57735846	57736046	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001304456)	promoter-TSS (NM_001304456)	-111.0	NM_011883	24017.0	Mm.274360	NM_011883	ENSMUSG00000036503	Rnf13	2010001H16Rik|Rzf	ring finger protein 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122392968-2	chr5	122392868	122393068	+	751.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019824, intron 1 of 6)	B4A|SINE|B4	1090.0	NM_019824	56378.0	Mm.275942	NM_019824	ENSMUSG00000029465	Arpc3	1110006A04Rik|p21-ARC|p21-Ar|p21Arc	actin related protein 2/3 complex, subunit 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-19590183-3	chr10	19590127	19590327	+	803.799988	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16A|LTR|ERVL	-1722.0	NM_010511	15979.0	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	2.24501237401189	2.64898267080356	1.74501802315579	2.69451244014351	2.48266209555008	3.3715719828878	2.31523167497291	2.70838050987124	0.811912295028274	0.305400862033262	0.806769348156094
Merged-chr8-80803918-2	chr8	80803818	80804018	+	633.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021356, intron 1 of 9)	intron (NM_021356, intron 1 of 9)	-64459.0	NM_053124	93762.0	Mm.246803	NM_053124	ENSMUSG00000031715	Smarca5	4933427E24Rik|D030040M08Rik|D330027N15Rik|MommeD4|Snf2h	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46835187-2	chr8	46835087	46835287	+	857.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_008391, intron 6 of 8)	B3A|SINE|B2	95442.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-88274785-3	chr1	88274666	88274866	+	751.299988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198652, intron 3 of 7)	intron (NM_198652, intron 3 of 7)	2791.0	NM_172505	212427.0	Mm.384762	NM_172505		A730008H23Rik	Fleg1	RIKEN cDNA A730008H23 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-5955743-4	chr11	5955663	5955863	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019661)	promoter-TSS (NM_019661)	5.0	NM_019661	56418.0	Mm.294821	NM_019661	ENSMUSG00000002741	Ykt6	0610042I15Rik|1810013M05Rik|AW105923	YKT6 v-SNARE homolog (S. cerevisiae)	protein-coding	4.33396651103647	5.29807391317167	4.96995838236717	4.29970771315609	4.82905459406901	4.90568848892533	5.24391579201687	4.37646447282305	0.107874352699928	0.775330337010717	0.998431161219273
Merged-chr4-43571480-2	chr4	43571380	43571580	+	797.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_172692, intron 3 of 16)	intron (NM_172692, intron 3 of 16)	-7255.0	NM_172866	242406.0	Mm.259311	NM_172866	ENSMUSG00000028468	Rgp1	1110029E03Rik|AI527196|F730001J03|mKIAA0258	RAB6A GEF compex partner 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-43518918-4	chr17	43518855	43519055	+	931.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-16182.0	NM_008585	17287.0	Mm.5346	NM_008585	ENSMUSG00000023914	Mep1a	AI098089|AW107200|Mep-1|Mep-1a|Mep1	meprin 1 alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-111445963-2	chr11	111445863	111446063	+	780.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	379799.0	NM_008425	16518.0	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-115985100-2	chr4	115985000	115985200	+	864.416626	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	32824.0	NM_010173	14073.0	Mm.256025	NM_010173	ENSMUSG00000034171	Faah	AW412498	fatty acid amide hydrolase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-156066298-3	chr1	156066194	156066394	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001358627, exon 6 of 6)	3' UTR (NM_001358627, exon 6 of 6)	25433.0	NM_022329	240832.0	Mm.253335	NM_022329	ENSMUSG00000050565	Tor1aip2	1110020D10Rik|15kDa|A130072J07|AA103493|AW060462|AW610675|C77739|Ifrg15|Lull1	torsin A interacting protein 2	protein-coding	3.74346715999222	3.89862611462317	4.27711856778708	4.32063657471199	1.33830945924745	1.8935863974131	1.81260549362383	2.93809516246855	-3.24597164926616	4.54520439618944e-06	0.000233714410052061
Merged-chr19-43522205-2	chr19	43522091	43522291	+	851.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010324, intron 1 of 8)	intron (NM_010324, intron 1 of 8)	2414.0	NM_010324	14718.0	Mm.19039	NM_010324	ENSMUSG00000025190	Got1	AI789014|Got-1|cAspAT|cCAT	glutamic-oxaloacetic transaminase 1, soluble	protein-coding	2.02695941822676	2.7663333517676	0.85044644948054	0.829707304725974	1.22669574165065	1.59518298769443	1.68946244159725	0.83338635917106	-1.38675274227463	0.288418780469427	0.793815200967874
Merged-chr10-59262301-2	chr10	59262201	59262401	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER5|LTR|ERV1	40379.0	NM_172939	268301.0	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-90197533-4	chr16	90197419	90197619	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23223.0	NM_011434	20655.0	Mm.276325	NM_011434	ENSMUSG00000022982	Sod1	B430204E11Rik|Cu/Zn-SOD|CuZnSOD|Ipo-1|Ipo1|SODC|Sod-1	superoxide dismutase 1, soluble	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-51384179-4	chr6	51384136	51384336	+	754.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110455, intron 1 of 2)	intron (NR_110455, intron 1 of 2)	4526.0	NR_110455	625167.0	Mm.389772	NR_110455	ENSMUSG00000107660	Gm6559	EG625167	predicted gene 6559	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-41835497-2	chr17	41835397	41835597	+	740.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3C|LINE|L1	-480450.0	NM_028474	627626.0	Mm.390999	NM_028474	ENSMUSG00000042256	Ptchd4	3110082D06Rik|Gm321	patched domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72391300-4	chr6	72391190	72391390	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016794)	promoter-TSS (NM_016794)	-623.0	NM_016794	22320.0	Mm.1838	NM_016794	ENSMUSG00000050732	Vamp8	AU041171|Edb|endobrevin	vesicle-associated membrane protein 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-81665123-4	chr17	81665015	81665215	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 1 of 8)	intron (NR_104580, intron 1 of 8)	73272.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-121419829-3	chr9	121419712	121419912	+	845.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357968, intron 1 of 14)	intron (NM_001357968, intron 1 of 14)	16366.0	NM_001357968	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	1.08845032285585	1.5095646293378	1.45129911595676	0.983722753312629	0.775344075338686	0.81772045501434	1.57862937471947	1.6205523875057	-0.0189248079876003	0.989009489192633	0.998431161219273
Merged-chr11-48856116-1	chr11	48856016	48856216	+	584.0	f0_c57.idr	Intergenic	Intergenic	15304.0	NM_001355757	15944.0	Mm.29938	NM_008326	ENSMUSG00000046879	Irgm1	Ifggd3|Ifi1|Iigp3|Iipg3|Irgm	immunity-related GTPase family M member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-133554441-3	chr2	133554339	133554539	+	857.6166380000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007553, exon 2 of 3)	exon (NM_007553, exon 2 of 3)	2280.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-21052517-4	chr14	21052375	21052575	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134079)	promoter-TSS (NM_134079)	-33.0	NM_018829	55946.0	Mm.376269	NM_018829	ENSMUSG00000021824	Ap3m1	1200013D09Rik|C78982|R75378	adaptor-related protein complex 3, mu 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-72413089-2	chr4	72412989	72413189	+	695.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	211845.0	NR_027923	68285.0	Mm.37541	NR_027923		C630043F03Rik	AI851307	RIKEN cDNA C630043F03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-50708412-4	chr15	50708315	50708515	+	909.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310481, intron 4 of 5)	intron (NM_001310481, intron 4 of 5)	180634.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-126923792-4	chr3	126923717	126923917	+	943.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001327939, exon 46 of 46)	3' UTR (NM_001327939, exon 46 of 46)	19569.0	NM_001034168	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80831681-4	chr7	80831588	80831788	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR19-int|LTR|ERVK	-28357.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-102229372-2	chr11	102229272	102229472	+	849.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_106179)	TTS (NR_106179)	778.0	NR_106179	102465892.0		NR_106179	ENSMUSG00000098863	Mir8101	Gm27705|mmu-mir-8101	microRNA 8101	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-113484967-2	chr6	113484867	113485067	+	610.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_145485, intron 2 of 9)	B3|SINE|B2	1611.0	NR_145485	171508.0	Mm.41593	NM_133930	ENSMUSG00000030284	Creld1	AI843811|i11E7	cysteine-rich with EGF-like domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-56682738-2	chr8	56682638	56682838	+	570.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	131604.0	NM_015791	50753.0	Mm.251174	NM_015791	ENSMUSG00000038206	Fbxo8	Fbx8	F-box protein 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-82807329-3	chr6	82807254	82807454	+	858.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32900.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-99111917-4	chr4	99111825	99112025	+	895.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026082, intron 1 of 47)	MLT1K|LTR|ERVL-MaLR	8990.0	NM_001290636	67299.0	Mm.260623	NM_026082	ENSMUSG00000028556	Dock7	3110056M06Rik|Gm430	dedicator of cytokinesis 7	protein-coding	3.19249726175964	3.30849423030647	3.6672691180306	3.80032629536484	3.35804230882454	3.11799662867134	2.44209974359301	2.91933729446519	-0.833883059389541	0.16157207009593	0.622415965615578
Merged-chr6-145303091-4	chr6	145302988	145303188	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52536.0	NR_045598	100039495.0	Mm.121014	NR_045598	ENSMUSG00000086013	Gm15706	-	predicted gene 15706	ncRNA	6.26650942102772	6.6161771046843	6.38139971146986	6.84114532140466	6.52716887906566	6.17216396488394	6.72694911465097	7.0450950813583	0.123056157796555	0.583248811605789	0.966599221005409
Merged-chr13-81781449-3	chr13	81781351	81781551	+	738.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-1796.0	NM_007684	12626.0	Mm.12481	NM_007684	ENSMUSG00000021537	Cetn3	MmCEN3	centrin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117794754-2	chr10	117794654	117794854	+	977.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2049.0	NM_134010	103468.0	Mm.12568	NM_134010	ENSMUSG00000052798	Nup107	AW541137|C76801	nucleoporin 107	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-105954037-1	chr7	105953937	105954137	+	585.5	f0_c57.idr	promoter-TSS (NM_029000)	promoter-TSS (NM_029000)	-67.0	NM_029000	74558.0	Mm.458429	NM_029000	ENSMUSG00000045868	Gvin1	9130002C22Rik|9830104F22Rik|Iigs1|VLIG|VLIG-1	GTPase, very large interferon inducible 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-118863337-2	chr10	118863241	118863441	+	580.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001014390, intron 2 of 2)	intron (NM_001014390, intron 2 of 2)	5562.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	1.52826432024905	1.23133800007667	2.09076277698802	2.33398122630776	1.94037968709762	2.30341866156952	1.45721587111603	2.58376001971328	0.671467774176901	0.514859054740203	0.94704807932946
Merged-chr19-34540387-2	chr19	34540287	34540487	+	676.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-10307.0	NM_008332	15958.0	Mm.2036	NM_008332	ENSMUSG00000045932	Ifit2	AV302338|Ifi54|P54	interferon-induced protein with tetratricopeptide repeats 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-63898877-2	chr3	63898777	63898977	+	603.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	29921.0	NM_001357824	329659.0	Mm.39342	NM_177856	ENSMUSG00000048581	E130311K13Rik	-	RIKEN cDNA E130311K13 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-184502731-1	chr1	184502631	184502831	+	644.0	f0_balb.idr	Intergenic	Intergenic	54960.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-6429698-2	chr15	6429598	6429798	+	799.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_023118, exon 10 of 15)	exon (NM_023118, exon 10 of 15)	-15635.0	NM_013485	12279.0	Mm.29095	NM_013485	ENSMUSG00000022149	C9	-	complement component 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140207836-2	chr5	140207736	140207936	+	870.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_152617, intron 10 of 16)	intron (NR_152617, intron 10 of 16)	-32918.0	NM_001359027	17120.0	Mm.27250	NM_010752	ENSMUSG00000029554	Mad1l1	AI173502|AW550425|Mad1	MAD1 mitotic arrest deficient 1-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-64123264-2	chr1	64123164	64123364	+	672.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1875.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120678609-4	chr8	120678512	120678712	+	853.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10292.0	NM_001293559	12857.0	Mm.386758	NM_009941	ENSMUSG00000031818	Cox4i1	AL024441|COX|COX IV-1|COXIV|Cox4|Cox4a|IV-1	cytochrome c oxidase subunit 4I1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-41046043-2	chr8	41045946	41046146	+	618.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001005863, intron 5 of 13)	intron (NM_001005863, intron 5 of 13)	-4115.0	NM_001005865	102103.0	Mm.149438	NM_001005863	ENSMUSG00000045636	Mtus1	AI481402|ATBP135|Atip1|B430010I23Rik|B430305I03Rik|C85752|Cctsg1-440|MD44|MTSG1|mKIAA1288	mitochondrial tumor suppressor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-30945425-3	chr5	30945324	30945524	+	907.6666869999999	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001160149)	promoter-TSS (NM_001160149)	3.0	NM_001160149	68567.0	Mm.45127	NM_026770	ENSMUSG00000029161	Cgref1	1110004G24Rik|AW045201|Cgr11	cell growth regulator with EF hand domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4438662-2	chr19	4438562	4438762	+	996.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045990)	promoter-TSS (NR_045990)	-661.0	NR_045990	319314.0	Mm.393810	NR_045989	ENSMUSG00000087132	A930001C03Rik	-	RIKEN cDNA A930001C03 gene	ncRNA	0.330589450206443	0.115886978835333	0.393067056297854	0.108663533053991	0.592670289377317	0.286003444448365	0.399688295759622	0.109207756075019	1.00959682355841	0.606982324164909	1
Merged-chr7-24971453-4	chr7	24971364	24971564	+	916.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010261, intron 3 of 4)	intron (NM_010261, intron 3 of 4)	1264.0	NM_010261	14470.0	Mm.22473	NM_010261	ENSMUSG00000003380	Rabac1	2310040I06Rik|Gbpap1|PRA1|prenylin	Rab acceptor 1 (prenylated)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36016589-1	chr18	36016489	36016689	+	542.0	f1_balb.idr	Intergenic	Intergenic	51759.0	NR_110349	74002.0	Mm.196944	NM_028707	ENSMUSG00000024347	Psd2	6330404E20Rik|AW125584|EFA6C	pleckstrin and Sec7 domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-99199202-1	chr4	99199102	99199302	+	717.0	f1_c57bl6.idr	intron (NM_175029, intron 1 of 10)	B2_Mm2|SINE|B2	5055.0	NM_001145967	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	-1.53362919331644	-1.50201671710775	-1.51157659084044	-1.08120497225282	-1.53141005593807	-1.49994505258991	-1.50941244497383	-1.51802371459528	-1.94474658522739	0.577200604274218	1
Merged-chr9-23601709-3	chr9	23601602	23601802	+	721.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	378626.0	NM_028472	73230.0	Mm.335020	NM_028472	ENSMUSG00000031963	Bmper	3110056H04Rik|CV-2|Crim3|Cv2	BMP-binding endothelial regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115552102-2	chr5	115551985	115552185	+	638.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011223, intron 7 of 10)	intron (NM_011223, intron 7 of 10)	-7382.0	NM_007475	11837.0	Mm.5286	NM_007475	ENSMUSG00000067274	Rplp0	36B4|Arbp|L10E	ribosomal protein, large, P0	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83125119-4	chr11	83125027	83125227	+	881.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8307.0	NM_011407	20555.0	Mm.10948	NM_011407	ENSMUSG00000078763	Slfn1	AV316259	schlafen 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-57790734-4	chr6	57790627	57790827	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146168, intron 1 of 4)	intron (NM_146168, intron 1 of 4)	34398.0	NM_146168	232023.0	Mm.24642	NM_146168	ENSMUSG00000037788	Vopp1	AW146242|Ecop	vesicular, overexpressed in cancer, prosurvival protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-116494832-4	chr7	116494761	116494961	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9508.0	NM_001130479	53322.0	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-76392314-2	chr12	76392214	76392414	+	580.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-11862.0	NM_001002012	15512.0	Mm.296181	NM_008301	ENSMUSG00000059970	Hspa2	70kDa|HSP70.2|HSP70A2|Hsp70-2	heat shock protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-11730291-4	chr11	11730193	11730393	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301865, intron 3 of 6)	intron (NM_001301865, intron 3 of 6)	40116.0	NM_001301863	22778.0	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-57331152-4	chr17	57331026	57331226	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-27560.0	NM_001355723	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-37814439-3	chr16	37814342	37814542	+	826.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008047, intron 2 of 10)	intron (NM_008047, intron 2 of 10)	37387.0	NM_008047	14314.0	Mm.182434	NM_008047	ENSMUSG00000022816	Fstl1	AI316791|AW107808|Fstl|TSC-36	follistatin-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-120535059-2	chr1	120534959	120535159	+	718.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30035.0	NM_010766	17167.0	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-85432440-2	chr8	85432340	85432540	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025722, intron 1 of 3)	CpG	401.0	NR_033144	66714.0	Mm.272748	NM_025722	ENSMUSG00000036934	4921524J17Rik	-	RIKEN cDNA 4921524J17 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-88826256-4	chr6	88826141	88826341	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011844, exon 8 of 8)	3' UTR (NM_011844, exon 8 of 8)	15694.0	NM_001362152	80283.0	Mm.166858	NM_030251	ENSMUSG00000030083	Abtb1	AI847549|BC003234|BPOZ|EF1ABP	ankyrin repeat and BTB (POZ) domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-131095040-3	chr2	131094937	131095137	+	901.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8272.0	NM_011426	20612.0	Mm.1374	NM_011426	ENSMUSG00000027322	Siglec1	Cd169|Siglec-1|Sn	sialic acid binding Ig-like lectin 1, sialoadhesin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-59459100-1	chr1	59459000	59459200	+	819.0	f0_balb.idr	Intergenic	Intergenic	-23047.0	NM_008057	14369.0	Mm.297906	NM_008057	ENSMUSG00000041075	Fzd7	Fz7	frizzled class receptor 7	protein-coding	0.205618763829623	1.13329742644256	0.223192664493973	0.696022572720126	1.01962298398682	0.233493199285986	0.225056759741812	0.217785131517436	-0.752417159614904	0.710762046862285	1
Merged-chr11-47276871-4	chr11	47276783	47276983	+	919.087524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011891, intron 2 of 7)	intron (NM_011891, intron 2 of 7)	102419.0	NM_011891	24052.0	Mm.338890	NM_011891	ENSMUSG00000020354	Sgcd	35kDa|delta-SG	sarcoglycan, delta (dystrophin-associated glycoprotein)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-33262443-2	chr4	33262343	33262543	+	935.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F1|SINE|Alu	-13656.0	NM_001033225	108767.0	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-101925149-2	chr5	101925049	101925249	+	731.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 18 of 66)	intron (NM_172882, intron 18 of 66)	144772.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	-1.11589496890002	-1.09450166798638	-1.10527661558122	-1.11289118706061	-0.743330102955235	-1.09216669189381	-1.10283740362588	-0.812267967659489	2.60947216455732	0.420385736532007	1
Merged-chr15-59821394-2	chr15	59821272	59821472	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26413.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	-1.04446994549586	-1.02430150555533	-0.85571191593018	-1.04088093696898	-1.04393624043168	-1.02172839526125	-0.444248496842517	-1.04050309324358	1.85096186283575	0.558013953607104	1
Merged-chr14-25747086-2	chr14	25746986	25747186	+	570.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001101433, intron 2 of 3)	intron (NM_001101433, intron 2 of 3)	21770.0	NM_001101433	71918.0	Mm.41904	NM_001101433	ENSMUSG00000055538	Zcchc24	2310047A01Rik	zinc finger, CCHC domain containing 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129744428-1	chr4	129744328	129744528	+	682.0	f1_balb.idr	Intergenic	Intergenic	-2125.0	NR_045036	20218.0	Mm.8256	NM_011317	ENSMUSG00000028790	Khdrbs1	Sam68|p62|p68	KH domain containing, RNA binding, signal transduction associated 1	protein-coding	1.21340598286939	2.4378634286215	2.35455983273364	2.28760725894782	1.87538443600427	2.09715375380694	1.88345453643883	1.96719035226614	-0.535377738149861	0.585647807718423	0.967449368090758
Merged-chr5-115341256-4	chr5	115341160	115341360	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026933)	promoter-TSS (NM_026933)	13.0	NM_026933	69076.0	Mm.27951	NM_026933	ENSMUSG00000029535	Triap1	1810015M01Rik|AU020874|AU043831|P53csv|Wf-1	TP53 regulated inhibitor of apoptosis 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-39777339-7	chr15	39777196	39777396	+	952.142883	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022722, intron 9 of 9)	intron (NM_022722, intron 9 of 9)	-19749.0	NR_045788	100503072.0	Mm.446661	NR_045788	ENSMUSG00000087695	Gm16291	-	predicted gene 16291	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-143219573-4	chr6	143219462	143219662	+	849.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26326.0	NR_027803	52285.0	Mm.354898	NM_001033129		D6Ertd474e	1700001I24Rik|AU023129	DNA segment, Chr 6, ERATO Doi 474, expressed	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-68032379-1	chr18	68032279	68032479	+	542.0	f1_c57bl6.idr	intron (NM_172631, intron 1 of 5)	intron (NM_172631, intron 1 of 5)	99206.0	NM_172631	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-145157052-3	chr3	145156951	145157151	+	891.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38451.0	NM_025714	52184.0	Mm.259105	NM_025714	ENSMUSG00000028256	Odf2l	4733401D09Rik|9630045K08Rik|D3Ertd250e	outer dense fiber of sperm tails 2-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-8736747-2	chr3	8736647	8736847	+	636.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69709.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-48408080-2	chr17	48407980	48408180	+	623.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110832, intron 1 of 9)	intron (NM_001110832, intron 1 of 9)	1740.0	NM_001110832	18044.0	Mm.4929	NM_010913	ENSMUSG00000023994	Nfya	AA407810|Cbf-b|SEZ-10|SEZ10	nuclear transcription factor-Y alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-79928273-4	chr10	79928175	79928375	+	978.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001288625, intron 1 of 8)	intron (NM_001288625, intron 1 of 8)	934.0	NM_001288625	13496.0	Mm.301282	NM_007880	ENSMUSG00000019564	Arid3a	Bright|Dri1|Dril1	AT rich interactive domain 3A (BRIGHT-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126979746-4	chr8	126979636	126979836	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_151744)	promoter-TSS (NR_151744)	-298.0	NR_151744	629746.0	Mm.264954	NR_151744		Gm29688	-	predicted gene, 29688	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-106888512-2	chr9	106888412	106888612	+	960.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_029103, exon 4 of 4)	3' UTR (NM_029103, exon 4 of 4)	-1512.0	NM_175402	109095.0	Mm.431589	NM_175402	ENSMUSG00000074102	Rbm15b	1810017N16Rik	RNA binding motif protein 15B	protein-coding	0.291920573529679	0.319600470035575	0.310641894377372	1.1028692418585	0.936491242721257	0.321606073708892	0.312626536765413	1.19985255799983	0.931024380065109	0.636769897138528	1
Merged-chr10-81180326-2	chr10	81180226	81180426	+	741.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_007907, exon 9 of 14)	exon (NM_007907, exon 9 of 14)	1365.0	NR_028549	100217454.0		NR_028549	ENSMUSG00000064441	Snord37	MBII-376	small nucleolar RNA, C/D box 37	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-98472688-2	chr8	98472588	98472788	+	679.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F2|SINE|Alu	-539199.0	NR_110579	100873092.0	Mm.414599	NR_110579	ENSMUSG00000089819	Gm15679	-	predicted gene 15679	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-79088312-2	chr2	79088212	79088412	+	752.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-167114.0	NM_010576	16401.0	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-63150764-2	chr14	63150664	63150864	+	778.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360211, intron 7 of 7)	intron (NM_001360211, intron 7 of 7)	27123.0	NM_001360211	14137.0	Mm.474432	NM_010191	ENSMUSG00000021273	Fdft1	SQS|SS	farnesyl diphosphate farnesyl transferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-67074079-3	chr6	67073980	67074180	+	847.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040278, intron 4 of 6)	intron (NR_040278, intron 4 of 6)	-36673.0	NM_007836	13197.0	Mm.72235	NM_007836	ENSMUSG00000036390	Gadd45a	AA545191|Ddit1|GADD45	growth arrest and DNA-damage-inducible 45 alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-15444080-2	chr3	15443982	15444182	+	663.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17655.0	NM_001002898	320832.0	Mm.330924	NM_178792	ENSMUSG00000095788	Sirpb1a	9930027N05Rik|SIRP-beta|Sirpb|Sirpb1	signal-regulatory protein beta 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-69109438-4	chr2	69109326	69109526	+	821.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172856, exon 10 of 10)	3' UTR (NM_172856, exon 10 of 10)	-26374.0	NM_181547	329416.0	Mm.90047	NM_181547	ENSMUSG00000034738	Nostrin	Daip2|mDaIP2	nitric oxide synthase trafficker	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-24680098-2	chr1	24679998	24680198	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310483, intron 1 of 15)	intron (NM_001310483, intron 1 of 15)	1180.0	NM_001310483	68421.0	Mm.336563	NM_026719	ENSMUSG00000073725	Lmbrd1	0910001K20Rik|AV347960	LMBR1 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-109426751-2	chr11	109426651	109426851	+	647.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252193, intron 1 of 7)	intron (NM_001252193, intron 1 of 7)	531.0	NM_001252193	13929.0	Mm.211850	NM_025275	ENSMUSG00000020610	Amz2	AA408420|ESTM12|X83328	archaelysin family metallopeptidase 2	protein-coding	-0.499940950918087	-0.487518524828365	0.0891561271406926	-0.494726023626598	-0.499164980458282	-0.486601867615524	0.100277611126392	-0.494177430718284	0.0410194320726077	0.98816738256539	1
Merged-chr6-124787178-3	chr6	124787069	124787269	+	979.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7442.0	NM_001302555	16977.0	Mm.3207	NM_013588	ENSMUSG00000030125	Lrrc23	4921537K05Rik|B7|Lrpb7	leucine rich repeat containing 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-38458431-3	chr15	38458328	38458528	+	700.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32119.0	NR_105916	102465574.0		NR_105916	ENSMUSG00000099110	Mir6951	Gm27765|mmu-mir-6951	microRNA 6951	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-84102769-4	chr7	84102656	84102856	+	656.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-16251.0	NM_030728	80982.0	Mm.160389	NM_030728	ENSMUSG00000052353	Cemip	12H19.01.T7|6330404C01Rik|9930013L23Rik|AY007814|Kiaa1199	cell migration inducing protein, hyaluronan binding	protein-coding	0.718684133688172	0.875001636513746	0.440301014565041	0.785870308615147	0.398496954545062	0.274185587015708	0.26785745732455	0.262461117461961	-3.37913020016302	0.0682006112308927	1
Merged-chr8-105393965-4	chr8	105393860	105394060	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301173, intron 4 of 15)	intron (NM_001301173, intron 4 of 15)	18579.0	NM_001081333	102075.0	Mm.32034	NM_175321	ENSMUSG00000014782	Plekhg4	4931414L13Rik|AI448583|mFLJ00068	pleckstrin homology domain containing, family G (with RhoGef domain) member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-112624750-2	chr12	112624650	112624850	+	698.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007421, intron 1 of 12)	intron (NM_007421, intron 1 of 12)	4703.0	NM_007421	11565.0	Mm.3440	NM_007421	ENSMUSG00000011148	Adssl1	AI528595|Adss|Adss1	adenylosuccinate synthetase like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-98806329-2	chr15	98806229	98806429	+	652.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001013741, exon 2 of 2)	exon (NM_001013741, exon 2 of 2)	1596.0	NM_001013741	13199.0	Mm.390810	NM_001013741	ENSMUSG00000059213	Ddn	Gm748	dendrin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-85243331-1	chr1	85243231	85243431	+	581.0	f1_balb.idr	Intergenic	Intergenic	27235.0	NM_175219	620078.0	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik	RIKEN cDNA C130026I21 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-35515705-4	chr15	35515599	35515799	+	971.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177151, intron 17 of 61)	intron (NM_177151, intron 17 of 61)	144153.0	NM_177151	666173.0	Mm.309250	NM_177151	ENSMUSG00000037646	Vps13b	1810042B05Rik|2310042E16Rik|4732488H20|C330002D13Rik|C87206|Coh1|D230005K13|mKIAA0532|mKIAA5032	vacuolar protein sorting 13B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-134838431-3	chr4	134838323	134838523	+	601.266663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355499, intron 1 of 11)	intron (NM_001355499, intron 1 of 11)	14922.0	NM_001355501	66146.0	Mm.99793	NM_025382	ENSMUSG00000028826	Tmem57	1110007C24Rik|9230118A01Rik|AI317300|AI606104|C61|Maco1	transmembrane protein 57	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120767266-2	chr11	120767166	120767366	+	588.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16938.0	NM_009053	19719.0	Mm.871	NM_009053	ENSMUSG00000025158	Rfng	-	RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111535415-2	chr12	111535315	111535515	+	711.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2686.0	NM_178041	217869.0	Mm.271222	NM_173363	ENSMUSG00000021282	Eif5	2810011H21Rik|D12Ertd549e	eukaryotic translation initiation factor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-125127930-4	chr4	125127825	125128025	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153159)	promoter-TSS (NM_153159)	-44.0	NM_153159	230738.0	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-77984419-6	chr11	77984268	77984468	+	946.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_174852, intron 2 of 14)	CpG-2283	1552.0	NM_174852	268448.0	Mm.274329	NM_174852	ENSMUSG00000037791	Phf12	2410142K10Rik|F630045O13|PF1|mKIAA1523	PHD finger protein 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-54829430-1	chr1	54829330	54829530	+	822.0	f0_balb.idr	intron (NM_001081433, intron 1 of 27)	intron (NM_001081433, intron 1 of 27)	96957.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-95973480-4	chr10	95973380	95973580	+	868.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001932, intron 1 of 28)	intron (NM_001001932, intron 1 of 28)	32817.0	NM_001001932	216238.0	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-103852442-1	chr3	103852342	103852542	+	825.0	f1_balb.idr	intron (NM_001142960, intron 3 of 3)	intron (NM_001142960, intron 3 of 3)	-7353.0	NR_104070	19260.0	Mm.395	NM_008979	ENSMUSG00000027843	Ptpn22	70zpep|PEP|Ptpn8	protein tyrosine phosphatase, non-receptor type 22 (lymphoid)	protein-coding	2.92044420067969	1.47658026699757	2.30976521342528	1.88442485955552	3.01596097570555	3.04449896845747	3.78536449639902	2.25181096523375	1.60290257311904	0.0513091302342185	0.330779107223657
Merged-chr1-91023506-2	chr1	91023406	91023606	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111312, intron 1 of 12)	intron (NM_001111312, intron 1 of 12)	24779.0	NM_001111312	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180392276-4	chr1	180392167	180392367	+	944.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081175, intron 2 of 7)	intron (NM_001081175, intron 2 of 7)	-61718.0	NR_003623	277333.0	Mm.389223	NM_199472		Gm5069	EG277333	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89202885-4	chr3	89202780	89202980	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008094)	promoter-TSS (NM_008094)	-45.0	NM_001077411	14466.0	Mm.5031	NM_008094	ENSMUSG00000028048	Gba	GBA1|GC|GCase|GLUC|betaGC	glucosidase, beta, acid	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-115676085-2	chr8	115675985	115676185	+	730.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30809.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-83839622-4	chr3	83839530	83839730	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011905, intron 2 of 2)	RSINE1|SINE|B4	1978.0	NM_011905	24088.0	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-9424693-4	chr13	9424596	9424796	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081426, intron 1 of 36)	MTA_Mm|LTR|ERVL-MaLR	148171.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28983181-2	chr7	28983081	28983281	+	846.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355054, intron 2 of 31)	intron (NM_001355054, intron 2 of 31)	327.0	NM_008279	26411.0	Mm.148278	NM_008279	ENSMUSG00000037337	Map4k1	Hpk1|mHPK1	mitogen-activated protein kinase kinase kinase kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-25563896-4	chr15	25563792	25563992	+	875.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58658.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-139611751-2	chr4	139611633	139611833	+	725.5	f0_balb.idr|f1_balb.idr	intron (NM_001205173, intron 5 of 8)	intron (NM_001205173, intron 5 of 8)	-11161.0	NM_175438	212647.0	Mm.273571	NM_175438	ENSMUSG00000028737	Aldh4a1	A930035F14Rik|Ahd-1|Ahd1|Aldh4|Aldh5a1|E330022C09|P5cd|P5cdh|P5cdhl|P5cdhs|Ssdh1	aldehyde dehydrogenase 4 family, member A1	protein-coding	-0.240483048935824	-0.375096299598441	-0.0429196710254367	-0.383029933357555	-0.387922459169965	-0.374088163097288	0.416027790391743	-0.382425630857386	1.15465819636314	0.642815769059617	1
Merged-chr11-100356981-2	chr11	100356881	100357081	+	707.666687	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177981)	promoter-TSS (NM_177981)	-840.0	NM_010404	15114.0	Mm.281700	NM_010404	ENSMUSG00000006930	Hap1	HAP-1	huntingtin-associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-146737351-2	chr5	146737251	146737451	+	641.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011669, exon 9 of 9)	3' UTR (NM_011669, exon 9 of 9)	57605.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-59839377-4	chr11	59839278	59839478	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011991, intron 1 of 11)	CpG	389.0	NM_011991	26572.0	Mm.40	NM_011991	ENSMUSG00000019373	Cops3	Csn3|Sgn3	COP9 signalosome subunit 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-137116136-3	chr2	137116046	137116246	+	748.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013822, intron 1 of 25)	CpG-8595	374.0	NM_013822	16449.0	Mm.22398	NM_013822	ENSMUSG00000027276	Jag1	ABE2|Gsfabe2|Htu|Ozz|Ser-1	jagged 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115520456-2	chr5	115520342	115520542	+	889.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011223, intron 1 of 10)	intron (NM_011223, intron 1 of 10)	13766.0	NM_133915	19303.0	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	3.1002123003825	2.59294123330924	2.77957741895628	3.84111737606911	2.79124952077356	3.23262134143903	2.35615279408259	3.2801953326863	-0.372164615997654	0.582698159054444	0.966599221005409
Merged-chr3-9835105-2	chr3	9835054	9835254	+	689.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-1475.0	NM_001195031	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	-0.546788269889671	0.101514345566832	-0.538384471439815	-0.541540539039748	-0.546006965485395	-0.0132890237707241	-0.537482935337208	-0.5409889094789	-0.385487687419026	0.889913942124054	1
Merged-chr13-58130473-2	chr13	58130373	58130573	+	996.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-1917.0	NM_029872	77134.0	Mm.490274	NM_029872	ENSMUSG00000007836	Hnrnpa0	1110055B05Rik|3010025E17Rik|Hnrpa0|hnRNP A0	heterogeneous nuclear ribonucleoprotein A0	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19304762-3	chr7	19304670	19304870	+	916.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008036, exon 4 of 4)	3' UTR (NM_008036, exon 4 of 4)	5275.0	NM_008036	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	1.44999184549014	2.1615492571317	1.71634336696425	1.66981150527602	1.46034275744514	2.1782001226164	2.20249367715783	1.34586746253332	0.249642771616316	0.810310249096758	0.998431161219273
Merged-chr17-56146054-2	chr17	56145954	56146154	+	668.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5711.0	NM_001130456	20359.0	Mm.8029	NM_013662	ENSMUSG00000001227	Sema6b	Sema|Seman|VIb|semaZ	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-51844837-4	chr13	51844714	51844914	+	968.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1861.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41346653-4	chr19	41346551	41346751	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 2 of 16)	intron (NM_031376, intron 2 of 16)	38419.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-72379608-4	chr2	72379508	72379708	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023057, intron 8 of 19)	intron (NM_023057, intron 8 of 19)	93907.0	NM_178084	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-12592171-3	chr10	12592061	12592261	+	733.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011682, intron 50 of 73)	MTD|LTR|ERVL-MaLR	269574.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-23432738-4	chr13	23432629	23432829	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1712.0	NR_015492	320842.0	Mm.487476	NR_015492	ENSMUSG00000085024	C230035I16Rik	-	RIKEN cDNA C230035I16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-84402717-2	chr10	84402617	84402817	+	641.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001004363, intron 2 of 6)	intron (NM_001004363, intron 2 of 6)	37754.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-22015782-4	chr16	22015688	22015888	+	960.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027488, intron 3 of 16)	intron (NR_027488, intron 3 of 16)	6304.0	NM_001357424	75826.0	Mm.297431	NM_029457	ENSMUSG00000022855	Senp2	2310007L05Rik|4930538C18Rik|AI646780|AW554757|Smt3ip2|SuPr-1|mKIAA1331	SUMO/sentrin specific peptidase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-156534136-4	chr1	156534001	156534201	+	935.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-24686.0	NM_009595	11352.0	Mm.329515	NM_009595	ENSMUSG00000026596	Abl2	AA536808|Abll|Arg	v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)	protein-coding	3.05560340842954	3.16222366859695	2.9581719816028	2.65487869963672	2.92609695110282	3.83852822549406	2.31013951203438	2.23622655142534	0.0622833478293907	0.930529437729054	0.998431161219273
Merged-chr14-51253754-4	chr14	51253639	51253839	+	888.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR25B|LTR|ERVK	2373.0	NM_053113	93726.0	Mm.153688	NM_053113	ENSMUSG00000047222	Rnase2a	Ear11	ribonuclease, RNase A family, 2A (liver, eosinophil-derived neurotoxin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-30600853-4	chr3	30600780	30600980	+	964.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1010.0	NM_029690	76652.0	Mm.116928	NM_029690	ENSMUSG00000037737	Actrt3	1700119I24Rik|ARP-T3|Arpm1	actin related protein T3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-40258161-4	chr10	40258062	40258262	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026113)	promoter-TSS (NM_026113)	-450.0	NM_001359492	67371.0	Mm.64104	NM_026113	ENSMUSG00000019837	Gtf3c6	2410016F19Rik|AU019813	general transcription factor IIIC, polypeptide 6, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27708173-4	chr17	27708108	27708308	+	842.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286743, intron 9 of 9)	intron (NM_001286743, intron 9 of 9)	20743.0	NM_013891	30051.0	Mm.26768	NM_013891	ENSMUSG00000024215	Spdef	PDEF|Pse	SAM pointed domain containing ets transcription factor	protein-coding	0.167025110785464	-0.264399832508364	-0.10222989836865	-0.271324913112208	-0.275557867955327	0.209651914697798	-0.267453950541623	-0.114789281727224	0.0752905368561742	0.974130342205896	1
Merged-chr1-74258837-3	chr1	74258740	74258940	+	873.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357387, intron 7 of 10)	U6|snRNA|snRNA	-19760.0	NM_174985	227289.0	Mm.246587	NM_174985	ENSMUSG00000064272	Gpbar1	BG37|GPCR|GPR131|M-BAR|TGR5	G protein-coupled bile acid receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-94221925-3	chr6	94221811	94222011	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_130996, intron 1 of 1)	URR1B|DNA|hAT-Charlie	15531.0	NR_130996	78178.0	Mm.452749	NR_130996	ENSMUSG00000045095	4930511A08Rik	-	RIKEN cDNA 4930511A08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80625276-2	chr10	80625176	80625376	+	794.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134002, intron 1 of 10)	intron (NM_134002, intron 1 of 10)	2496.0	NM_134002	103236.0	Mm.29873	NM_134002	ENSMUSG00000003345	Csnk1g2	2810429I12Rik|AI463719	casein kinase 1, gamma 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-38693543-3	chr16	38693437	38693637	+	661.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020260, intron 1 of 11)	MTD|LTR|ERVL-MaLR	19498.0	NM_020260	12549.0	Mm.370848	NM_020260	ENSMUSG00000022799	Arhgap31	5830477L08Rik|AU041750|Cdgap|D330026I07Rik	Rho GTPase activating protein 31	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-82857721-2	chr18	82857621	82857821	+	559.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_125720, intron 2 of 2)	intron (NR_125720, intron 2 of 2)	1824.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-99315019-4	chr13	99314909	99315109	+	934.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29669.0	NM_026873	68927.0	Mm.276502	NM_026873	ENSMUSG00000021650	Ptcd2	1190005P08Rik	pentatricopeptide repeat domain 2	protein-coding	3.86446361071615	4.39280637703968	4.6658895540334	5.05090232267941	4.364361954393	4.79787879176196	4.40003266566975	4.42794134253425	-0.0692366135042489	0.862910797186549	0.998431161219273
Merged-chr2-27560964-4	chr2	27560879	27561079	+	916.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45832.0	NM_080848	140858.0	Mm.28265	NM_080848	ENSMUSG00000026917	Wdr5	2410008O07Rik|AA408785|AA960360|Big|Big-3	WD repeat domain 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75157837-2	chr11	75157737	75157937	+	580.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001002764, intron 16 of 18)	intron (NM_001002764, intron 16 of 18)	10315.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85885204-4	chr12	85885080	85885280	+	990.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347395, intron 12 of 32)	MTD|LTR|ERVL-MaLR	60230.0	NM_001081423	320244.0	Mm.132172	NM_177114	ENSMUSG00000012609	Ttll5	1700048H13Rik|2310009M18Rik|4930556H18Rik|AI428864|D630041K24Rik|R75373|Stamp|mKIAA0998	tubulin tyrosine ligase-like family, member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-112345316-2	chr5	112345216	112345416	+	599.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359853, intron 2 of 13)	intron (NM_001359853, intron 2 of 13)	2221.0	NM_138646	192232.0	Mm.238043	NM_138646	ENSMUSG00000042328	Hps4	2010205O06Rik|AU040608|BLOC-3|C130020P05Rik|le|mKIAA1667	HPS4, biogenesis of lysosomal organelles complex 3 subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132571713-2	chr4	132571613	132571813	+	811.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081211, intron 1 of 1)	intron (NM_001081211, intron 1 of 1)	7646.0	NM_001081211	19204.0	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	-1.8429182434137	-1.8129848525291	-1.82203695700074	-1.54461076807193	-1.84081697472045	-1.81102322372834	-1.81998775896484	-1.82814164409203	-1.43114970378833	0.684630132144154	1
Merged-chr11-68485443-2	chr11	68485343	68485543	+	647.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_177320, intron 5 of 18)	intron (NM_177320, intron 5 of 18)	-17576.0	NM_001004435	104709.0	Mm.234573	NM_001004435	ENSMUSG00000046207	Pik3r6	BB220380|p84|p84 PIKAP|p87(PIKAP)|p87PIKAP	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70766871-4	chr8	70766749	70766949	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023065)	promoter-TSS (NM_023065)	-186.0	NM_023065	65972.0	Mm.30241	NM_023065		Ifi30	GILT|IP30	interferon gamma inducible protein 30	protein-coding	6.23638941579916	6.15368711770264	6.82136284010575	6.74986074141273	6.36782027489198	6.33475945481903	6.39993781818945	7.06857199727547	0.063031438708232	0.790616632141351	0.998431161219273
Merged-chr13-48868777-2	chr13	48868677	48868877	+	559.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011078, intron 1 of 21)	intron (NM_011078, intron 1 of 21)	2108.0	NM_011078	18676.0	Mm.486213	NM_011078	ENSMUSG00000038025	Phf2	GRC5	PHD finger protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-9081359-7	chr13	9081055	9081255	+	848.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12726.0	NM_001311117	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-25166826-4	chr5	25166736	25166936	+	760.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14644.0	NM_026449	67909.0	Mm.141471	NM_026449	ENSMUSG00000028938	Galntl5	1700021B12Rik|Galnt15	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-97480991-4	chr16	97480887	97481087	+	859.508301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020622, intron 3 of 7)	MTE2b|LTR|ERVL-MaLR	-18081.0	NR_003520	17857.0	Mm.33996	NM_010846	ENSMUSG00000000386	Mx1	AI893580|Mx|Mx-1	MX dynamin-like GTPase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-140704135-2	chr4	140704035	140704235	+	715.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173867, intron 2 of 12)	intron (NM_173867, intron 2 of 12)	2662.0	NM_173867	108911.0	Mm.253	NM_173867	ENSMUSG00000040945	Rcc2	2610510H01Rik|2610529N02Rik|AA536646|AA675016|Td60|mKIAA1470	regulator of chromosome condensation 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-95320435-3	chr8	95320304	95320504	+	863.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199455, intron 4 of 7)	intron (NM_199455, intron 4 of 7)	8806.0	NM_199455	73407.0	Mm.472783	NM_028532	ENSMUSG00000090206	Tepp	1700055M20Rik	testis, prostate and placenta expressed	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-29533342-3	chr6	29533260	29533460	+	669.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252382, intron 2 of 8)	B1F|SINE|Alu	4078.0	NM_001252382	27056.0	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-74976125-4	chr9	74976029	74976229	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153584)	promoter-TSS (NM_153584)	18.0	NM_153584	235493.0	Mm.208955	NM_153584	ENSMUSG00000034858	Fam214a	6330415I01Rik|AI553555|C130047D21Rik|Kiaa1370|mKIAA1370	family with sequence similarity 214, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-86183672-3	chr15	86183587	86183787	+	954.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145475, intron 1 of 12)	intron (NM_145475, intron 1 of 12)	-2041.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-5494476-4	chr5	5494379	5494579	+	781.604187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15336.0	NM_001200025	381716.0	Mm.276086	NM_001200025	ENSMUSG00000079666	1700015F17Rik	Gm1686	RIKEN cDNA 1700015F17 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-96083069-2	chr16	96082957	96083157	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_176928)	promoter-TSS (NM_176928)	-629.0	NM_145125	93871.0	Mm.240871	NM_145125	ENSMUSG00000022914	Brwd1	5330419I02Rik|D530019K20Rik|G1-403-16|Wdr9|repro5	bromodomain and WD repeat domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-31679661-2	chr17	31679561	31679761	+	677.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_013501, exon 3 of 4)	exon (NM_013501, exon 3 of 4)	1730.0	NM_001278570	12954.0	Mm.1228	NM_013501	ENSMUSG00000024041	Cryaa	Acry-1|Crya-1|Crya1|DAcry-1|lop18	crystallin, alpha A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-81304810-2	chr7	81304710	81304910	+	638.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008803, intron 8 of 21)	intron (NM_008803, intron 8 of 21)	40424.0	NM_009092	20068.0	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-55499222-4	chr12	55499090	55499290	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6543.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32912604-4	chr2	32912497	32912697	+	974.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146119, intron 5 of 13)	intron (NM_146119, intron 5 of 13)	36463.0	NM_146119	227737.0	Mm.301646	NM_146119	ENSMUSG00000026796	Fam129b	9130404D14Rik	family with sequence similarity 129, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-110706994-4	chr9	110706897	110707097	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028312, intron 2 of 6)	intron (NM_028312, intron 2 of 6)	35613.0	NM_001083936	19228.0	Mm.3542	NM_011199	ENSMUSG00000032492	Pth1r	PPR|Pthr|Pthr1	parathyroid hormone 1 receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-150832797-2	chr2	150832697	150832897	+	1000.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_151505, exon 13 of 13)	non-coding (NR_151505, exon 13 of 13)	9773.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-49685363-2	chr16	49685263	49685463	+	656.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13931.0	NM_028680	73916.0	Mm.241276	NM_028680	ENSMUSG00000032965	Ift57	4833420A15Rik|Esrrbl1|Hippi|MHS4R2	intraflagellar transport 57	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100957381-2	chr11	100957281	100957481	+	586.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008986, exon 2 of 2)	3' UTR (NM_008986, exon 2 of 2)	13234.0	NM_001359105	19285.0	Mm.21864	NM_008986	ENSMUSG00000004044	Cavin1	2310075E07Rik|AW546441|Cav-p60|Cavin|Ptrf	caveolae associated 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-161214815-2	chr2	161214715	161214915	+	648.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-105729.0	NR_126509	71389.0	Mm.122738	NM_173368	ENSMUSG00000057133	Chd6	5430439G14Rik|6330406J24Rik|CHD-6	chromodomain helicase DNA binding protein 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26236208-2	chr17	26236108	26236308	+	811.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001206335, intron 1 of 12)	intron (NM_001206335, intron 1 of 12)	8034.0	NM_207217	106581.0	Mm.28844	NM_207217	ENSMUSG00000024187	Fam234a	Itfg3	family with sequence similarity 234, member A	protein-coding	0.969350902373612	2.39217182206581	1.29294225336245	2.61246334657506	1.39434548810517	1.76443497157614	1.03763407432922	2.41352317158066	-0.602776519402828	0.613099061871459	0.976924404519883
Merged-chr11-54728712-2	chr11	54728612	54728812	+	743.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_178626, intron 3 of 5)	intron (NM_178626, intron 3 of 5)	58991.0	NM_178626	72729.0	Mm.29476	NM_178626	ENSMUSG00000052298	Cdc42se2	2810404F18Rik|AA408783|AA536669|SPEC2	CDC42 small effector 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-3442845-4	chr7	3442742	3442942	+	935.6749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18180.0	NM_133183	54378.0	Mm.424047	NM_133183	ENSMUSG00000078815	Cacng6	2310033H20Rik	calcium channel, voltage-dependent, gamma subunit 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-83141043-4	chr8	83140931	83141131	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24321.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	3.95905382162041	4.29888347157236	4.71787122365545	4.10747307530191	4.3781240667833	4.61656278341555	4.70867087030831	4.066496268073	0.211777946034848	0.600682706602229	0.972964840983327
Merged-chr11-117611211-2	chr11	117611111	117611311	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015489)	promoter-TSS (NR_015489)	-36.0	NR_015489	78403.0	Mm.212543	NR_015489		2900041M22Rik	-	RIKEN cDNA 2900041M22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-36648043-4	chr15	36647927	36648127	+	995.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39054.0	NM_008774	18458.0	Mm.371570	NM_008774	ENSMUSG00000022283	Pabpc1	PABP|Pabp1|PabpI|Pabpl1|ePAB	poly(A) binding protein, cytoplasmic 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-135534923-4	chr1	135534814	135535014	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173437, intron 2 of 28)	intron (NM_173437, intron 2 of 28)	50441.0	NM_173437	215690.0	Mm.34977	NM_173437	ENSMUSG00000009418	Nav1	9530089B19|9930003A20Rik|C230080M11Rik|Gm38399|Pomfil3|Unc53h1|mKIAA1151|steerin-1	neuron navigator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-116671538-7	chr6	116671342	116671542	+	887.761902	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178045, intron 1 of 10)	intron (NM_178045, intron 1 of 10)	2394.0	NM_178045	213391.0	Mm.257931	NM_178045	ENSMUSG00000042129	Rassf4	3830411C14Rik|AD037|AI586137	Ras association (RalGDS/AF-6) domain family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-26666554-4	chr19	26666471	26666671	+	886.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011416, intron 10 of 32)	intron (NM_011416, intron 10 of 32)	61411.0	NM_011416	67155.0	Mm.491146	NM_011416	ENSMUSG00000024921	Smarca2	2610209L14Rik|SNF2alpha|Snf2l2|brahma|brm	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-82039056-7	chr11	82038939	82039139	+	832.7023929999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3462.0	NM_011333	20296.0	Mm.290320	NM_011333	ENSMUSG00000035385	Ccl2	AI323594|HC11|JE|MCAF|MCP-1|MCP1|SMC-CF|Scya2|Sigje	chemokine (C-C motif) ligand 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28347947-4	chr7	28347841	28348041	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-2748.0	NM_013647	20055.0	Mm.702	NM_013647	ENSMUSG00000037563	Rps16	AA420385|AI317031	ribosomal protein S16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-86479274-4	chr9	86479155	86479355	+	894.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177208, intron 1 of 38)	intron (NM_177208, intron 1 of 38)	12101.0	NM_177208	320615.0	Mm.245500	NM_177208	ENSMUSG00000034973	Dopey1	B130005I07Rik|BC035275|C130028L17|D9Ertd809e	dopey family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-122261855-2	chr14	122261755	122261955	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029556, intron 1 of 7)	ID_B1|SINE|B4	-28217.0	NR_015532	68245.0	Mm.443285	NR_015532	ENSMUSG00000100585	1700108J01Rik	-	RIKEN cDNA 1700108J01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-130913292-4	chr4	130913190	130913390	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010686)	promoter-TSS (NM_010686)	-44.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53126939-4	chr4	53126834	53127034	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 5 of 49)	intron (NM_013454, intron 5 of 49)	32961.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115059143-4	chr5	115059039	115059239	+	996.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029012, intron 1 of 10)	intron (NM_029012, intron 1 of 10)	47615.0	NM_029012	74585.0	Mm.355894	NM_029012	ENSMUSG00000029550	Sppl3	4833416I09Rik|Psl4|Usmg3	signal peptide peptidase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-18621242-2	chr16	18621142	18621342	+	799.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_213614)	TTS (NM_213614)	1161.0	NM_001001999	14724.0	Mm.475622	NM_010327	ENSMUSG00000050761	Gp1bb	-	glycoprotein Ib, beta polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-46163152-4	chr17	46163089	46163289	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357745, intron 1 of 11)	intron (NM_001357745, intron 1 of 11)	1125.0	NM_001357745	56055.0	Mm.22147	NM_019581	ENSMUSG00000023952	Gtpbp2	nmf205	GTP binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-150608572-4	chr2	150608475	150608675	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027977)	promoter-TSS (NM_027977)	-8.0	NM_001356492	71881.0	Mm.26599	NM_027977	ENSMUSG00000033096	Apmap	2310001A20Rik|AI314817	adipocyte plasma membrane associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-85859628-4	chr15	85859524	85859724	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001168672)	promoter-TSS (NM_001168672)	-83.0	NM_001168672	29870.0	Mm.20858	NM_013882	ENSMUSG00000022385	Gtse1	B99|Gtse-1	G two S phase expressed protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-110910115-2	chr5	110910015	110910215	+	672.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001267622, intron 2 of 22)	MERVL_2A-int|LTR|ERVL	30312.0	NM_001267622	209683.0	Mm.295660	NM_024477	ENSMUSG00000033209	Ttc28	2310015L07Rik|6030435N04|AI428795|AI851761|BC002262|TPRBK	tetratricopeptide repeat domain 28	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-3621418-4	chr8	3621314	3621514	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026156)	promoter-TSS (NM_026156)	-118.0	NM_026156	67439.0	Mm.23739	NM_026156	ENSMUSG00000019470	Xab2	0610041O14Rik|AV025587	XPA binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-119444327-4	chr6	119444230	119444430	+	961.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009525, intron 3 of 4)	intron (NM_009525, intron 3 of 4)	5056.0	NM_001271757	22419.0	Mm.321818	NM_009525	ENSMUSG00000030170	Wnt5b	AW545702|Wnt-5b	wingless-type MMTV integration site family, member 5B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-21477310-3	chr16	21477202	21477402	+	996.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081366, intron 17 of 46)	intron (NM_001081366, intron 17 of 46)	54184.0	NM_001285894	209018.0	Mm.235683	NM_145948	ENSMUSG00000033653	Vps8	AI315068|AU040738|mKIAA0804	VPS8 CORVET complex subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-33050553-4	chr12	33050458	33050658	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024478, intron 11 of 19)	LTR53B|LTR|ERVL	42317.0	NM_001024478	68764.0	Mm.60083	NM_001024478	ENSMUSG00000035860	Cdhr3	1110049B09Rik|BB172694|Cdh28	cadherin-related family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101543294-2	chr11	101543194	101543394	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009764, intron 2 of 22)	intron (NM_009764, intron 2 of 22)	8661.0	NM_009764	12189.0	Mm.244975	NM_009764	ENSMUSG00000017146	Brca1	-	breast cancer 1, early onset	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-56747980-2	chr18	56747880	56748080	+	551.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_010721, exon 9 of 11)	exon (NM_010721, exon 9 of 11)	40167.0	NM_010721	16906.0	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67226165-4	chr10	67226066	67226266	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001242396, exon 9 of 25)	exon (NM_001242396, exon 9 of 25)	40416.0	NM_001242396	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-71548041-2	chr2	71547941	71548141	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_039557, intron 2 of 3).2	intron (NR_039557, intron 2 of 3).2	-1287.0	NM_010054	13392.0	Mm.3896	NM_010054	ENSMUSG00000023391	Dlx2	AW121999|Dlx-2|Tes-1	distal-less homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-136381035-4	chr7	136380923	136381123	+	853.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31608.0	NR_040459	330664.0	Mm.127762	NR_040459	ENSMUSG00000109633	C230079O03Rik	C230079O03	RIKEN cDNA C230079O03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-170246785-2	chr2	170246685	170246885	+	707.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-104110.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-19706668-2	chr4	19706568	19706768	+	703.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_074090, intron 1 of 24)	intron (NR_074090, intron 1 of 24)	2336.0	NM_177327	107568.0	Mm.78312	NM_177327	ENSMUSG00000041058	Wwp1	8030445B08Rik|AIP5|SDRP1|Tiul1	WW domain containing E3 ubiquitin protein ligase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-49172094-4	chr14	49171968	49172168	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027492)	promoter-TSS (NM_027492)	-178.0	NM_027492	70646.0	Mm.275688	NM_027492	ENSMUSG00000036282	Naa30	4930487N19Rik|5730533P17Rik|AI447922|AW322455|Nat12	N(alpha)-acetyltransferase 30, NatC catalytic subunit	protein-coding	2.18724318740685	4.17075220727298	3.6260635467076	2.90252524546435	3.15007907490018	4.0921407352491	3.13050767840094	2.79637176094421	-0.0541659875156608	0.935816545899085	0.998431161219273
Merged-chr10-77555900-1	chr10	77555800	77556000	+	541.0	f1_balb.idr	intron (NM_008404, intron 8 of 15)	intron (NM_008404, intron 8 of 15)	25552.0	NM_008404	16414.0	Mm.1137	NM_008404	ENSMUSG00000000290	Itgb2	2E6|AI528527|Cd18|LAD|LCAMB|Lfa1|MF17	integrin beta 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-116211002-3	chr3	116210906	116211106	+	586.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42478.0	NM_022427	64378.0	Mm.40025	NM_022427	ENSMUSG00000068696	Gpr88	AW061286|Strg	G-protein coupled receptor 88	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127381144-4	chr10	127381072	127381272	+	935.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359244, intron 1 of 25)	intron (NM_001359244, intron 1 of 25)	504.0	NM_001359244	71750.0	Mm.29342	NM_027900	ENSMUSG00000025404	R3hdm2	1300003K24Rik|AU041262|mKIAA1002	R3H domain containing 2	protein-coding	1.86794454963481	1.90320350703204	1.58373031341393	1.97545833297129	1.59457737286847	1.65108627875236	1.03651615920375	1.02056130459451	-1.62245671389031	0.169523593217472	0.63646477014796
Merged-chr7-127111685-4	chr7	127111588	127111788	+	768.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133686, intron 1 of 3)	B1F|SINE|Alu	10341.0	NM_133686	67375.0	Mm.26928	NM_133686	ENSMUSG00000030674	Qprt	2410027J01Rik|AI647766|QPRTase	quinolinate phosphoribosyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45435953-2	chr7	45435853	45436053	+	685.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030678, intron 1 of 15)	intron (NM_030678, intron 1 of 15)	1114.0	NM_030678	14936.0	Mm.275654	NM_030678	ENSMUSG00000003865	Gys1	Gys3|MGS	glycogen synthase 1, muscle	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-4993671-2	chr17	4993571	4993771	+	924.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1403.0	NM_001085355	239985.0	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-35916097-1	chr18	35915997	35916197	+	552.0	f1_c57bl6.idr	Intergenic	Intergenic	-48733.0	NM_001289602	74002.0	Mm.196944	NM_028707	ENSMUSG00000024347	Psd2	6330404E20Rik|AW125584|EFA6C	pleckstrin and Sec7 domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-38597660-1	chr19	38597560	38597760	+	576.0	f1_balb.idr	intron (NM_019588, intron 1 of 31)	intron (NM_019588, intron 1 of 31)	73463.0	NM_019588	74055.0	Mm.34031	NM_019588	ENSMUSG00000024998	Plce1	4933403A21Rik|PLCepsilon|Plce|mKIAA1516	phospholipase C, epsilon 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-60286097-1	chr5	60285997	60286197	+	728.0	f1_balb.idr	Intergenic	Lx2A|LINE|L1	-300095.0	NR_040682	71057.0	Mm.50817	NR_040682	ENSMUSG00000106013	4933402J10Rik	-	RIKEN cDNA 4933402J10 gene	ncRNA	0.614490051342319	0.494810239046905	0.940020712535087	1.01263560834495	0.61906570177031	0.496515870628444	0.949802963323453	1.01973733120995	0.035110275827271	0.982463919280785	1
Merged-chr12-70156282-3	chr12	70156213	70156413	+	840.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195033, intron 1 of 12)	intron (NM_001195033, intron 1 of 12)	2142.0	NM_001195033	100504285.0	Mm.291105	NM_001195033	ENSMUSG00000090121	Abhd12b	Gm804	abhydrolase domain containing 12B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-102874120-2	chr2	102874020	102874220	+	788.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039150, intron 1 of 13)	intron (NM_001039150, intron 1 of 13)	27545.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	-0.257016997000653	-0.241995179780243	-0.246907288991246	0.187738164910866	-0.256076768666679	-0.240889101813109	0.548509901952716	-0.0775359652850888	1.37061494349089	0.569187081084507	1
Merged-chr7-135715356-2	chr7	135715256	135715456	+	665.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081117, intron 1 of 13)	intron (NM_001081117, intron 1 of 13)	1023.0	NM_001081117	17345.0	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118652015-3	chr9	118651926	118652126	+	798.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 4 of 27)	intron (NM_133721, intron 4 of 27)	45317.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-58454652-1	chr16	58454552	58454752	+	591.0	f0_balb.idr	intron (NM_001356484, intron 9 of 15)	intron (NM_001356484, intron 9 of 15)	46117.0	NM_028523	73379.0	Mm.373589	NM_028523	ENSMUSG00000035107	Dcbld2	1700055P21Rik|AW146002|CLCP1|Esdn	discoidin, CUB and LCCL domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-91194193-1	chr15	91194093	91194293	+	801.0	f1_c57bl6.idr	Intergenic	Lx|LINE|L1	-2186.0	NM_001358967	26874.0	Mm.295456	NM_011994	ENSMUSG00000055782	Abcd2	ABC39|ALDL1|ALDR|ALDRP	ATP-binding cassette, sub-family D (ALD), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-75709450-4	chr7	75709353	75709553	+	778.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 17 of 36)	intron (NM_029332, intron 17 of 36)	-138885.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-13863642-4	chr16	13863517	13863717	+	772.395874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039533, intron 8 of 22)	intron (NM_001039533, intron 8 of 22)	39528.0	NM_001039533	94184.0	Mm.171484	NM_053181	ENSMUSG00000022680	Pdxdc1	2210010A19Rik|AA415817|Kiaa0251-hp	pyridoxal-dependent decarboxylase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-82971275-4	chr6	82971184	82971384	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033079, intron 3 of 9)	intron (NM_033079, intron 3 of 9)	24362.0	NM_033079	110958.0	Mm.100652	NM_033079	ENSMUSG00000030041	M1ap	D6Mm5e	meiosis 1 associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-94717673-2	chr11	94717573	94717773	+	549.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger1|DNA|TcMar-Tigger	-13174.0	NM_001007584	432589.0	Mm.342314	NM_001007584	ENSMUSG00000056008	Gm11541	-	predicted gene 11541	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-90683369-2	chr6	90683269	90683469	+	560.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356440, intron 3 of 13)	intron (NM_001356440, intron 3 of 13)	33160.0	NM_001134383	232227.0	Mm.196943	NM_182784	ENSMUSG00000034312	Iqsec1	AW561907|BC026481|BRAG2|D6Ertd349e|cI-43	IQ motif and Sec7 domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-5379313-4	chr2	5379194	5379394	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_030601)	promoter-TSS (NR_030601)	-96.0	NR_030601	100124465.0		NR_030601	ENSMUSG00000078031	Mir466d	Mirn466d	microRNA 466d	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-40025316-4	chr10	40025226	40025426	+	994.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144821)	promoter-TSS (NM_144821)	-58.0	NM_144821	215929.0	Mm.55513	NM_144821	ENSMUSG00000038522	Mfsd4b1	AI317395|AI482555|Naglt1a	major facilitator superfamily domain containing 4B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-6530051-2	chr18	6529951	6530151	+	847.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13943.0	NM_007935	13831.0	Mm.312133	NM_007935	ENSMUSG00000024240	Epc1	2400007E14Rik|5730566F07Rik|A930032N02Rik|mir-1893	enhancer of polycomb homolog 1	protein-coding	1.027378867594	0.511510814628758	1.61742806055902	0.492144743073393	0.653608343169043	1.08312739471643	0.503053415450585	0.851418206131403	-0.999580639246157	0.537398545958784	0.953963493057627
Merged-chr4-47276774-2	chr4	47276674	47276874	+	727.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009928, intron 14 of 39)	intron (NM_009928, intron 14 of 39)	68762.0	NM_009928	12819.0	Mm.233547	NM_009928	ENSMUSG00000028339	Col15a1	-	collagen, type XV, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-23057970-3	chr19	23057906	23058106	+	664.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-83220.0	NM_010638	16601.0	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|Gm9971	Kruppel-like factor 9	protein-coding	1.22204573493664	0.918109606034065	1.21911015137186	0.658428786489209	0.642624221226471	1.76068810288523	1.58979253675005	0.660355068693446	0.972666044276109	0.51966592095985	0.947641799425091
Merged-chr11-41632653-1	chr11	41632553	41632753	+	543.0	f1_balb.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	368061.0	NM_177408	14406.0	Mm.5309	NM_008073	ENSMUSG00000020436	Gabrg2	GABAA-R|Gabrg-2|gamma2	gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-6695432-4	chr11	6695328	6695528	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger7|DNA|TcMar-Tigger	24609.0	NR_046025	626419.0	Mm.390334	NR_046025	ENSMUSG00000086808	Gm11981	-	predicted gene 11981	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-62679157-3	chr1	62679053	62679253	+	972.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24164.0	NM_001077406	18187.0	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-107307838-2	chr11	107307738	107307938	+	591.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 4 of 9)	L1MB7|LINE|L1	-118457.0	NM_001161329	68979.0	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-37515134-2	chr13	37515035	37515235	+	902.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER57C2|LTR|ERV1	169790.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	1.92082995022401	0.63798706038079	0.866859378876342	2.11734697833419	0.797840807776022	1.12565831836406	0.624178888779375	0.608569498959378	-2.88377991218661	0.0575493430699793	0.355183651313586
Merged-chr1-65495031-2	chr1	65494931	65495131	+	705.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	183774.0	NM_139270	213527.0	Mm.294225	NM_139270	ENSMUSG00000025946	Pth2r	Pthr2	parathyroid hormone 2 receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-111233958-4	chr8	111233866	111234066	+	947.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009149, intron 1 of 25)	intron (NM_009149, intron 1 of 25)	25236.0	NM_009149	20340.0	Mm.276271	NM_009149	ENSMUSG00000003316	Glg1	AI593353|AW537898|CFR|CFR-1|ESL-1|MG-160|MG160|Selel	golgi apparatus protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114664850-1	chr11	114664750	114664950	+	643.0	f1_balb.idr	Intergenic	Intergenic	-3693.0	NM_023372	67671.0	Mm.238817	NM_023372	ENSMUSG00000057322	Rpl38	0610025G13Rik|Rbt|Ts|Tss	ribosomal protein L38	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-110077493-2	chr10	110077393	110077593	+	633.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-77274.0	NM_001081035	260315.0	Mm.225050	NM_177797	ENSMUSG00000020181	Nav3	4732483H20Rik|9630020C08Rik|POMFIL1|Pomfil1p|mKIAA0938|unc53H3	neuron navigator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120466405-2	chr11	120466305	120466505	+	756.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_197995, intron 3 of 4)	intron (NM_197995, intron 3 of 4)	1195.0	NM_197995	70317.0	Mm.485046	NM_197995	ENSMUSG00000057594	Arl16	2600005N12Rik	ADP-ribosylation factor-like 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72261472-4	chr6	72261374	72261574	+	964.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25897.0	NM_153778	71093.0	Mm.87449	NM_153778	ENSMUSG00000037621	Atoh8	4933425C05Rik|Hath6|Math6|bHLHa21|okadin	atonal bHLH transcription factor 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-55026863-1	chr1	55026763	55026963	+	1000.0	f1_c57bl6.idr	intron (NM_031179, intron 1 of 24)	intron (NM_031179, intron 1 of 24)	615.0	NM_031179	81898.0	Mm.279736	NM_031179	ENSMUSG00000025982	Sf3b1	155kDa|2810001M05Rik|AA409119|Prp10|SAP155|SF3b155|TA-8|Targ4	splicing factor 3b, subunit 1	protein-coding	4.42456255543664	3.67269291448906	3.44600387273074	4.70672132924043	4.52817705677054	3.59941545480444	3.47448626636928	4.49912610425315	-0.0629014297475271	0.900313808561231	0.998431161219273
Merged-chr11-107025803-4	chr11	107025689	107025889	+	839.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2434.0	NM_001163473	69066.0	Mm.40679	NM_001163473	ENSMUSG00000078607	1810010H24Rik	-	RIKEN cDNA 1810010H24 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-8817161-2	chr19	8817061	8817261	+	649.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_027412, intron 2 of 3)	intron (NM_027412, intron 2 of 3)	2133.0	NM_027412	70387.0	Mm.261082	NM_027412	ENSMUSG00000071660	Ttc9c	2210019E14Rik|6330408J23Rik	tetratricopeptide repeat domain 9C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21926483-2	chr9	21926383	21926583	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164614)	promoter-TSS (NM_001164614)	805.0	NM_001253869	235043.0	Mm.253329	NM_178577	ENSMUSG00000040883	Tmem205	-	transmembrane protein 205	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126506473-2	chr8	126506380	126506580	+	729.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31415.0	NM_001159907	212728.0	Mm.482479	NM_001159907	ENSMUSG00000090290	Tarbp1	Gm17296|Gm179	TAR RNA binding protein 1	protein-coding	-1.31349849087795	-1.28274354783242	-1.29349452597086	-1.3023256995151	-1.3130151546297	-1.28041376602105	-0.694015972326031	-1.30074492367298	2.57396649482007	0.456321314346772	1
Merged-chr11-50217099-2	chr11	50216999	50217199	+	698.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6279.0	NM_011018	18412.0	Mm.40828	NM_011018	ENSMUSG00000015837	Sqstm1	A170|OSF-6|Osi|STAP|STONE14|p62	sequestosome 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55268707-2	chr19	55268607	55268807	+	567.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_027976, exon 2 of 22)	exon (NM_027976, exon 2 of 22)	15338.0	NM_027976	433256.0	Mm.292056	NM_027976	ENSMUSG00000024981	Acsl5	1700030F05Rik|ACS2|ACS5|Facl5	acyl-CoA synthetase long-chain family member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70963723-3	chr14	70963625	70963825	+	570.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302094, intron 3 of 7)	intron (NM_001302094, intron 3 of 7)	73618.0	NM_001302094	14586.0	Mm.32619	NM_008115	ENSMUSG00000022103	Gfra2	-	glial cell line derived neurotrophic factor family receptor alpha 2	protein-coding	0.0641359932968924	-0.0569090694102535	0.578156606204661	0.0905249996498148	0.292961706627851	-0.0558619237526616	-0.0605235864588626	0.0932890344746689	-0.978551416542886	0.633943780903915	1
Merged-chr15-51990621-1	chr15	51990521	51990721	+	583.0	f0_balb.idr	intron (NM_009009, intron 1 of 13)	intron (NM_009009, intron 1 of 13)	1139.0	NM_009009	19357.0	Mm.182628	NM_009009	ENSMUSG00000022314	Rad21	SCC1|mKIAA0078	RAD21 cohesin complex component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-37735031-4	chr1	37734939	37735139	+	908.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15228.0	NM_028096	72097.0	Mm.142607	NM_028096	ENSMUSG00000026090	2010300C02Rik	-	RIKEN cDNA 2010300C02 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-20175417-2	chr11	20175317	20175517	+	693.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25995.0	NM_008996	19324.0	Mm.271944	NM_008996	ENSMUSG00000020149	Rab1a	Gtbp|Rab-1|Rab1|Ypt1|mKIAA3012	RAB1A, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-79223610-4	chr11	79223507	79223707	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19417.0	NM_001042565	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-100669790-3	chr13	100669580	100669780	+	905.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_183115, exon 1 of 12)	5' UTR (NM_183115, exon 1 of 12)	199.0	NM_001168386	76041.0	Mm.23977	NM_183115	ENSMUSG00000048924	Ccdc125	5830436D01Rik|AL023012	coiled-coil domain containing 125	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-77488145-3	chr1	77488063	77488263	+	990.6000369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007936, intron 3 of 17)	intron (NM_007936, intron 3 of 17)	8605.0	NR_105770	102465180.0		NR_105770	ENSMUSG00000099141	Mir6352	Gm27481|mmu-mir-6352	microRNA 6352	ncRNA	2.31118700109442	2.69331720662896	2.15026544092818	1.78085616534597	2.3302958902967	2.89099490844672	2.01582295288255	1.78922265517874	0.122648811688715	0.888441865148625	0.998431161219273
Merged-chr11-77377481-2	chr11	77377381	77377581	+	679.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291190, intron 1 of 13)	intron (NM_001291190, intron 1 of 13)	29201.0	NM_001291190	237860.0	Mm.440381	NM_177710	ENSMUSG00000037926	Ssh2	SSH-2|SSH-2L|mSSH-2L	slingshot protein phosphatase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-21962486-4	chr3	21962371	21962571	+	879.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-114181.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-24363389-2	chr7	24363289	24363489	+	724.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-6874.0	NM_001163510	16534.0	Mm.9911	NM_008433	ENSMUSG00000054342	Kcnn4	IK1|IKCA1|KCA4|KCa3.1|SK4|SKCas|mIKCa1	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4	protein-coding	0.9197071975396	1.02064845952626	1.6821530122659	0.755979754656963	1.21924079751536	0.786891410369252	1.96567775378926	1.41789539264099	0.972723608853835	0.479233290463654	0.928092227925527
Merged-chr1-36088984-2	chr1	36088847	36089047	+	830.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_015818, intron 1 of 1)	RSINE1|SINE|B4	20547.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-108736366-4	chr6	108736257	108736457	+	898.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46702.0	NM_026011	67166.0	Mm.271178	NM_026011	ENSMUSG00000030105	Arl8b	2610313E07Rik|3100002J04Rik|Arl10c|gie1	ADP-ribosylation factor-like 8B	protein-coding	0.881543281410442	0.936223729096175	1.47822350643441	1.78077332436668	1.49076000483399	1.18189896307498	2.12415444020422	1.57226232095199	1.02943719297981	0.41875668941191	0.898591877339902
Merged-chr3-88292176-4	chr3	88292079	88292279	+	840.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357024, intron 2 of 3)	B2_Mm2|SINE|B2	4659.0	NM_029801	76927.0	Mm.273330	NM_029801	ENSMUSG00000010538	Tsacc	1700021C14Rik|SIP	TSSK6 activating co-chaperone	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-37357846-2	chr7	37357719	37357919	+	688.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	411933.0	NM_172385	243937.0	Mm.322505	NM_172385	ENSMUSG00000043456	Zfp536	9630010P11Rik|Znf536|mKIAA0390	zinc finger protein 536	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-7900938-2	chr10	7900838	7901038	+	618.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52127.0	NM_001359534	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	0.129235220531668	-0.0393157222791486	-0.239297926760563	-0.242915571242848	0.553276378334395	-0.233552921887125	-0.238263837897441	-0.242283538568228	0.879412557704013	0.715336554777162	1
Merged-chr6-136690246-4	chr6	136690179	136690379	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28386.0	NM_025806	66857.0	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	6.66929139012273	6.83250557863066	6.7645648897153	7.11446602514488	6.74910982688823	7.05978509552191	6.41507844322918	6.50307082394209	-0.163098603107115	0.414240627028228	0.896442802092227
Merged-chr10-110805243-3	chr10	110805138	110805338	+	957.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045979, intron 2 of 2)	intron (NR_045979, intron 2 of 2)	59799.0	NM_178609	52679.0	Mm.11747	NM_178609	ENSMUSG00000020185	E2f7	A630014C11Rik|D10Ertd739e|E2F-7	E2F transcription factor 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-143988924-4	chr1	143988801	143989001	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	15248.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32312433-4	chr2	32312327	32312527	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010065, intron 19 of 20)	CpG-7982	-5838.0	NR_128563	104795665.0		NR_128563	ENSMUSG00000092765	Gm23363	Mir3154|mir-3154|mmu-mir-3154	predicted gene, 23363	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67704813-3	chr10	67704708	67704908	+	956.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-132849.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-30581417-3	chr14	30581269	30581469	+	986.5833130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9220.0	NR_037237	100526475.0		NR_037237	ENSMUSG00000093156	Mir3076	mir-3076|mmu-mir-3076	microRNA 3076	ncRNA	2.96527761701387	2.26330177892149	1.32917081104936	3.48594609656289	1.86882668412494	1.91059457124521	2.34485933874818	2.39260657889198	-1.23196422151791	0.176855407992449	0.646570188136342
Merged-chr1-62721551-4	chr1	62721453	62721653	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077404, intron 2 of 16)	intron (NM_001077404, intron 2 of 16)	18236.0	NM_001077407	18187.0	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97829561-2	chr11	97829461	97829661	+	869.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_010688, intron 4 of 6)	intron (NM_010688, intron 4 of 6)	-11219.0	NM_001080935	68127.0	Mm.110270	NM_001080935	ENSMUSG00000050538	B230217C12Rik	AI840637	RIKEN cDNA B230217C12 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-59560120-4	chr16	59560041	59560241	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4389.0	NM_174848	224273.0	Mm.246424	NM_174848	ENSMUSG00000022723	Crybg3	5031404N19|AU022790|Gm9581	beta-gamma crystallin domain containing 3	protein-coding	3.5823222625499	4.71518133879631	3.13902395949507	4.31331974930274	3.61213117078035	1.75197551296839	2.91855914767665	2.94462269056917	-1.62318451381052	0.0122856817115376	0.125842580399853
Merged-chr4-119141275-2	chr4	119141170	119141370	+	841.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32525.0	NM_011400	20525.0	Mm.21002	NM_011400	ENSMUSG00000028645	Slc2a1	Glut-1|Glut1	solute carrier family 2 (facilitated glucose transporter), member 1	protein-coding	0.469234782904926	0.220681738903557	0.78397485825505	0.928717203641262	0.349606018147661	0.222117756679065	0.39693836482031	0.210241168315777	-2.54463932534596	0.182080594425297	1
Merged-chr11-120823469-5	chr11	120823365	120823565	+	933.2999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007988, intron 1 of 42)	intron (NM_007988, intron 1 of 42)	1082.0	NM_007988	14104.0	Mm.236443	NM_007988	ENSMUSG00000025153	Fasn	A630082H08Rik|FAS	fatty acid synthase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-85142741-4	chr8	85142646	85142846	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9178.0	NM_001037922	624855.0	Mm.390061	NM_001037922	ENSMUSG00000062687	Cks1brt	EG624855|Gm6531	CDC28 protein kinase 1b, retrogene	protein-coding	5.34997037843283	5.30896264923618	5.85195164127618	5.41562182377545	5.91209194123816	4.00642458919997	4.95604314872674	5.0093831441837	-0.402574287690691	0.275402221759848	0.77982362793126
Merged-chr5-137029173-2	chr5	137029073	137029273	+	773.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1122.0	NM_001039385	381677.0	Mm.389697	NM_001039385	ENSMUSG00000037428	Vgf	Gm1052	VGF nerve growth factor inducible	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-49246228-2	chr11	49246128	49246328	+	931.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010794, intron 2 of 2)	intron (NM_010794, intron 2 of 2)	-1249.0	NM_001110149	17308.0	Mm.196933	NM_010794	ENSMUSG00000020346	Mgat1	Mgat-1	mannoside acetylglucosaminyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-12102316-4	chr18	12102223	12102423	+	889.18335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178801, intron 4 of 14)	intron (NM_178801, intron 4 of 14)	19214.0	NR_110356	338363.0	Mm.271567	NM_178801	ENSMUSG00000049411	Tmem241	6030446N20Rik	transmembrane protein 241	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-90656726-1	chr5	90656626	90656826	+	611.0	f1_c57bl6.idr	Intergenic	Intergenic	-16199.0	NM_001310656	73246.0	Mm.30172	NM_028478	ENSMUSG00000029370	Rassf6	1600016B17Rik	Ras association (RalGDS/AF-6) domain family member 6	protein-coding	0.613040446369521	1.59471216236212	1.61896818693312	1.13638349584192	0.946585351699605	1.07889497305225	0.643060105525918	0.631896020087954	-2.09292079575425	0.172046682121077	0.640000855339607
Merged-chr12-3874347-4	chr12	3874244	3874444	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007872, intron 6 of 22)	intron (NM_007872, intron 6 of 22)	-12100.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-32338739-4	chr13	32338629	32338829	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146041)	promoter-TSS (NM_146041)	-185.0	NM_146041	218138.0	Mm.247143	NM_146041	ENSMUSG00000038372	Gmds	BC031788|C87208	GDP-mannose 4, 6-dehydratase	protein-coding	7.57936929819761	7.72461052553271	8.0404537399087	7.4403306338078	7.31062729861545	7.12197858496995	7.37098911335264	7.6874690329832	-0.33444382624276	0.0506940129700498	0.327931107957343
Merged-chr5-43662683-4	chr5	43662537	43662737	+	690.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359906, intron 1 of 37)	intron (NM_001359906, intron 1 of 37)	258.0	NM_001359903	231214.0	Mm.44434	NM_172274	ENSMUSG00000039765	Cc2d2a	5730509K17Rik|b2b1035Clo	coiled-coil and C2 domain containing 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-146733148-2	chr5	146733061	146733261	+	810.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61795.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	-0.292095608361879	-0.278812309812278	0.379310888601305	-0.286527901942756	0.18443602083629	-0.277829301656532	-0.282209178934602	-0.121016570789666	-0.273634314220571	0.911260664346375	1
Merged-chr18-54978842-4	chr18	54978739	54978939	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175751, intron 2 of 9)	intron (NM_175751, intron 2 of 9)	11341.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-104441738-4	chr11	104441615	104441815	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359634, intron 2 of 14)	GA-rich|Low_complexity|Low_complexity	576.0	NM_001081045	76719.0	Mm.136418	NM_001081045	ENSMUSG00000018412	Kansl1	1700081L11Rik|9430041J06Rik|mKIAA1267	KAT8 regulatory NSL complex subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101965770-4	chr11	101965666	101965866	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024449, intron 1 of 1)	intron (NM_024449, intron 1 of 1)	1249.0	NM_024449	74499.0	Mm.265602	NM_024449	ENSMUSG00000001494	Sost	5430411E23Rik	sclerostin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-62344598-8	chr9	62344469	62344669	+	910.444641	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009672, intron 1 of 6)	CpG	3226.0	NM_009672	11737.0	Mm.269088	NM_009672	ENSMUSG00000032249	Anp32a	Anp32|I1PP2A|LANP|PHAP1|W91701|pp32	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107986575-4	chr9	107986470	107986670	+	958.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026597)	promoter-TSS (NM_026597)	-654.0	NM_026597	68176.0	Mm.76166	NM_026597	ENSMUSG00000042106	Fam212a	6230427J02Rik|Inka1	family with sequence similarity 212, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-120742315-2	chr5	120742215	120742415	+	788.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347448, intron 4 of 11)	B3|SINE|B2	7533.0	NM_145227	246728.0	Mm.260926	NM_145227	ENSMUSG00000032690	Oas2	Oasl11	2'-5' oligoadenylate synthetase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-134098378-5	chr1	134098305	134098505	+	869.31665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12837.0	NM_001284525	71884.0	Mm.328268	NM_027979	ENSMUSG00000026450	Chit1	2300002L19Rik	chitinase 1 (chitotriosidase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-25341870-3	chr15	25341770	25341970	+	828.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	71894.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-32609630-2	chr17	32609530	32609730	+	783.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-11689.0	NM_001100187	677156.0	Mm.484117	NM_001100187	ENSMUSG00000062464	Cyp4f37	Gm9705	cytochrome P450, family 4, subfamily f, polypeptide 37	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-50096762-4	chr18	50096641	50096841	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31460.0	NM_008292	15488.0	Mm.277857	NM_008292	ENSMUSG00000024507	Hsd17b4	17-beta-HSD|17[b]-HSD|DBP|MFE-2|MFP2|MPF-2|Mfp-2|perMFE-2	hydroxysteroid (17-beta) dehydrogenase 4	protein-coding	4.36330146535007	3.95033322510855	3.56012129566383	4.44992452915633	3.87711267000595	4.32545845719641	3.48998902662596	4.77596261711327	0.0970240386664969	0.837426249226968	0.998431161219273
Merged-chr11-87031046-4	chr11	87030962	87031162	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37300.0	NM_001005341	77864.0	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-76675550-4	chr5	76675453	76675653	+	982.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	83839.0	NM_199032	381644.0	Mm.332452	NM_199032	ENSMUSG00000036403	Cep135	BC062951|Cep4|Gm1044	centrosomal protein 135	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-75888714-2	chr15	75888614	75888814	+	980.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001282443)	promoter-TSS (NM_001282443)	9.0	NM_001282443	223645.0		NM_001282443	ENSMUSG00000098678	Mroh6	Gm19570	maestro heat-like repeat family member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139669181-2	chr5	139669093	139669293	+	642.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	67140.0	NM_174850	231830.0	Mm.240510	NM_174850	ENSMUSG00000036718	Micall2	A930021H16Rik|JRAB|MICAL-L2|mFLJ00139	MICAL-like 2	protein-coding	0.376556313770916	0.0404208195065504	0.0356283761032131	0.0319457163186529	0.0267635571813573	0.380096997365494	0.471666093159465	0.436283333934035	1.76019494740633	0.40934587923875	1
Merged-chr5-139437694-3	chr5	139437601	139437801	+	870.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028469, intron 2 of 4)	intron (NM_028469, intron 2 of 4)	14522.0	NM_029771	76854.0	Mm.389706	NM_029771	ENSMUSG00000053647	Gper1	6330420K13Rik|CMKRL2|Ceprl|FEG-1|GPCR-Br|Gper|Gpr30	G protein-coupled estrogen receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-12088000-4	chr4	12087912	12088112	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177861)	promoter-TSS (NM_177861)	-5.0	NR_110955	329795.0	Mm.475125	NM_177861	ENSMUSG00000049488	Tmem67	5330408M12Rik|B230117O07|b2b1163.1Clo|b2b1291.1Clo	transmembrane protein 67	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-37279483-2	chr10	37279383	37279583	+	870.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-140557.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-140751188-4	chr6	140751084	140751284	+	961.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	124299.0	NM_001309436	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-103155818-2	chr5	103155718	103155918	+	544.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081567, intron 2 of 13)	Lx9|LINE|L1	55516.0	NM_001081567	26414.0	Mm.39253	NM_009158	ENSMUSG00000046709	Mapk10	C230008H04Rik|JNK3|JNK3B1|JNK3B2|SAPK(beta)|Serk2|p493F12|p54bSAPK	mitogen-activated protein kinase 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80166923-4	chr7	80166843	80167043	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19898.0	NM_013659	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97371552-2	chr6	97371452	97371652	+	737.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 6 of 23)	intron (NM_145148, intron 6 of 23)	87734.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-88652970-2	chr8	88652870	88653070	+	576.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_145857, exon 2 of 13)	exon (NM_145857, exon 2 of 13)	5623.0	NM_145857	257632.0	Mm.222633	NM_145857	ENSMUSG00000055994	Nod2	ACUG|BLAU|CD|Card15|F830032C23Rik|IBD1|Nlrc2	nucleotide-binding oligomerization domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-7577551-4	chr9	7577442	7577642	+	935.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310717, intron 5 of 9)	intron (NM_001310717, intron 5 of 9)	6146.0	NM_001310717	234911.0	Mm.334940	NM_001030289	ENSMUSG00000070323	Mmp27	Gm180	matrix metallopeptidase 27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-82940128-4	chr8	82940001	82940201	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177378, intron 1 of 6)	intron (NM_177378, intron 1 of 6)	76745.0	NM_177378	330812.0	Mm.491438	NM_177378	ENSMUSG00000047747	Rnf150	A630007N06Rik|C030044C12Rik|Greul5|mKIAA1214	ring finger protein 150	protein-coding	2.26401781701717	2.70752444837546	3.46600000376774	3.15365464508619	2.8508305946858	1.95947390675122	3.49207798198354	3.4534164873272	0.172580585679803	0.811548011495503	0.998431161219273
Merged-chr2-77237094-2	chr2	77236994	77237194	+	685.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175465, intron 3 of 17)	intron (NM_175465, intron 3 of 17)	43498.0	NM_175465	228071.0	Mm.27120	NM_175465	ENSMUSG00000042272	Sestd1	1500031J16Rik|A930010O20|Solo/Trio8	SEC14 and spectrin domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141455091-4	chr7	141454997	141455197	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163689)	promoter-TSS (NM_001163689)	-91.0	NM_025802	66853.0	Mm.29998	NM_025802	ENSMUSG00000025509	Pnpla2	0610039C21Rik|1110001C14Rik|Atgl|TTS-2.2	patatin-like phospholipase domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-108731020-4	chr8	108730926	108731126	+	839.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007496, intron 1 of 9)	intron (NM_007496, intron 1 of 9)	16382.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-61711688-4	chr2	61711623	61711823	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021526)	promoter-TSS (NM_021526)	29.0	NM_021526	59029.0	Mm.218198	NM_021526	ENSMUSG00000026914	Psmd14	2610312C03Rik|3200001M20Rik|AA986732|Pad1|Poh1|rpm11	proteasome (prosome, macropain) 26S subunit, non-ATPase, 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-138131334-4	chr1	138131176	138131376	+	901.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001268286, intron 2 of 28)	intron (NM_001268286, intron 2 of 28)	43850.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34948524-2	chr17	34948424	34948624	+	608.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	2484.0	NR_028527	100217427.0		NR_028527	ENSMUSG00000093009	Snord52	MBII-297	small nucleolar RNA, C/D box 52	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-59309869-3	chr3	59309780	59309980	+	723.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177855, intron 42 of 43)	MLT1C|LTR|ERVL-MaLR	34376.0	NM_001162884	242050.0	Mm.228086	NM_001162884	ENSMUSG00000036334	Igsf10	6530405F15Rik|9030224D03|AA409708|AA536958|AI414626|Adlican2|CMF608	immunoglobulin superfamily, member 10	protein-coding	1.92541661369421	1.29528736501201	2.67870764246202	2.50724975831867	2.07317008104176	3.25404269274665	2.38804289785433	1.23253145190244	0.49031040445646	0.62898244210511	0.981055511574238
Merged-chr3-68710626-2	chr3	68710526	68710726	+	739.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	19202.0	NM_008351	16159.0	Mm.103783	NM_008351	ENSMUSG00000027776	Il12a	IL-12p35|Il-12a|Ll12a|p35	interleukin 12a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-123168964-1	chr3	123168864	123169064	+	540.0	f0_c57.idr	intron (NM_080451, intron 1 of 4)	intron (NM_080451, intron 1 of 4)	67185.0	NM_080451	118449.0	Mm.34359	NM_080451	ENSMUSG00000050315	Synpo2	1110069I04Rik|2310068J10Rik|9530006G20Rik|AI848603|Myo	synaptopodin 2	protein-coding	1.06925434708463	0.699332665902777	0.67375713477739	1.04890117812264	1.38861460235081	0.492907020542372	0.483716037053963	0.475809936310444	-0.410512994039372	0.806561310236981	1
Merged-chr1-161501467-2	chr1	161501359	161501559	+	632.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_183391, intron 2 of 2)	Lx|LINE|L1	6802.0	NM_183391	240873.0	Mm.276823	NM_183391	ENSMUSG00000066755	Tnfsf18	Gitrl|Tnlg2a	tumor necrosis factor (ligand) superfamily, member 18	protein-coding	0.130480542192286	-0.018812587689696	-0.026632564477504	-0.0327396055607101	0.135595659934976	-0.0170642347628763	1.19779238151116	0.333458337884917	3.50352327019868	0.0829157870854558	1
Merged-chr2-145804778-4	chr2	145804680	145804880	+	864.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028724, intron 2 of 12)	L1MB3|LINE|L1	18664.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-68451566-1	chr11	68451466	68451666	+	654.0	f0_balb.idr	intron (NM_177320, intron 1 of 18)	intron (NM_177320, intron 1 of 18)	19441.0	NM_177320	320207.0	Mm.244960	NM_177320	ENSMUSG00000020901	Pik3r5	AV230647|F730038I15Rik|Foap2|p101	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-79797764-1	chr10	79797664	79797864	+	571.0	f0_balb.idr	intron (NM_023128, intron 1 of 8)	intron (NM_023128, intron 1 of 8)	4192.0	NM_001161747	18483.0	Mm.34650	NM_023128	ENSMUSG00000035863	Palm	-	paralemmin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-11230517-1	chr12	11230417	11230617	+	646.0	f0_balb.idr	Intergenic	Intergenic	-21569.0	NM_019544	56184.0	Mm.117113	NM_019544	ENSMUSG00000047002	Msgn1	Msgn|pMsgn1	mesogenin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-95851132-1	chr15	95851032	95851232	+	596.666687	f0_c57.idr	intron (NM_001253813, intron 2 of 20)	MTB|LTR|ERVL-MaLR	-21060.0	NR_155276	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19123295-2	chr7	19123195	19123395	+	590.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175530, intron 1 of 1)	RLTR22_Mus|LTR|ERVK	3436.0	NM_175530	243867.0	Mm.230830	NM_175530	ENSMUSG00000050428	Fbxo46	20D7-FC4|4932704E22Rik|Fbxo34l	F-box protein 46	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-21055464-4	chr5	21055327	21055527	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011203, intron 1 of 17)	CpG	484.0	NM_001356591	19248.0	Mm.319117	NM_011203	ENSMUSG00000028771	Ptpn12	P19-PTP|PTP-P19|PTP-PEST|PTPG1	protein tyrosine phosphatase, non-receptor type 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-88412571-4	chr4	88412467	88412667	+	871.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_025760)	TTS (NM_025760)	26359.0	NM_025760	66775.0	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-108329963-3	chr13	108329905	108330105	+	688.022217	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178683, intron 2 of 10)	intron (NM_178683, intron 2 of 10)	13668.0	NM_178683	218581.0	Mm.32318	NM_178683	ENSMUSG00000021697	Depdc1b	9830132O03|AW260467|XTP1	DEP domain containing 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-34132628-4	chr7	34132529	34132729	+	972.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_207212, exon 1 of 8)	exon (NM_207212, exon 1 of 8)	639.0	NM_207212	101543.0	Mm.422738	NM_207212	ENSMUSG00000036459	Wtip	-	WT1-interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-14188892-2	chr9	14188792	14188992	+	822.3000490000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-87409.0	NM_030261	75747.0	Mm.325126	NM_030261	ENSMUSG00000032009	Sesn3	5630400E15Rik|BC003348|SEST3	sestrin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180762330-2	chr1	180762230	180762430	+	700.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36287.0	NM_133225	170760.0	Mm.272981	NM_133225	ENSMUSG00000026499	Acbd3	60kDa|8430407O11Rik|D1Ertd10e|GCP60|GOLPH1|Gocap1|Pap7	acyl-Coenzyme A binding domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-25785277-4	chr8	25785149	25785349	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026121)	promoter-TSS (NM_026121)	-40.0	NM_026121	67384.0	Mm.118400	NM_026121	ENSMUSG00000037316	Bag4	2410112I15Rik|SODD	BCL2-associated athanogene 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-88826794-2	chr6	88826694	88826894	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011844, exon 8 of 8)	3' UTR (NM_011844, exon 8 of 8)	15141.0	NM_001362152	80283.0	Mm.166858	NM_030251	ENSMUSG00000030083	Abtb1	AI847549|BC003234|BPOZ|EF1ABP	ankyrin repeat and BTB (POZ) domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-99240754-4	chr5	99240674	99240874	+	970.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145839, intron 4 of 13)	intron (NM_145839, intron 4 of 13)	12153.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-127135459-3	chr2	127135419	127135619	+	889.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	-1565.0	NM_144818	215387.0	Mm.29786	NM_144818	ENSMUSG00000034906	Ncaph	A730011O11Rik|Brrn1|CAP-H|HCAP-H|mCAP-H	non-SMC condensin I complex, subunit H	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-48012493-2	chr2	48012393	48012593	+	605.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-801616.0	NM_007396	11480.0	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-11917568-4	chr19	11917464	11917664	+	917.962524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172635, intron 2 of 18)	intron (NM_172635, intron 2 of 18)	5165.0	NM_172635	225929.0	Mm.42711	NM_172635	ENSMUSG00000046139	Patl1	AV312086|Pat1b	protein associated with topoisomerase II homolog 1 (yeast)	protein-coding	5.50484804286481	4.36201154210876	5.09547941187751	5.09812373865899	4.3486281540401	3.82688538036029	5.45825257098776	3.7470214155044	-0.658784481246001	0.138687883491606	0.58153910512545
Merged-chr3-84854640-1	chr3	84854540	84854740	+	811.0	f0_balb.idr	intron (NM_001177773, intron 1 of 13)	Lx8b|LINE|L1	-9505.0	NM_001177774	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-115901807-3	chr6	115901708	115901908	+	873.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167763, intron 15 of 28)	intron (NM_001167763, intron 15 of 28)	-30119.0	NM_145383	212541.0	Mm.2965	NM_145383	ENSMUSG00000030324	Rho	Noerg1|Opn2|Ops|RP4	rhodopsin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107542102-4	chr9	107541983	107542183	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019720)	promoter-TSS (NM_019720)	110.0	NM_001357290	56368.0	Mm.24833	NM_019720	ENSMUSG00000037190	Cyb561d2	AW049681|Tsp10	cytochrome b-561 domain containing 2	protein-coding	2.21515342071207	2.50947680625592	2.92670830073155	2.44469341239221	2.77607916771017	1.24395054591002	1.20845342876038	1.17663483215043	-1.54724782858464	0.154234880702098	0.609540819282158
Merged-chr1-86450798-2	chr1	86450698	86450898	+	568.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24469.0	NM_027966	71863.0	Mm.179627	NM_027966	ENSMUSG00000036574	Tex44	1700019O17Rik	testis expressed 44	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-13303353-2	chr10	13303253	13303453	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001195065, intron 1 of 12)	intron (NM_001195065, intron 1 of 12)	20936.0	NM_001195096	215789.0	Mm.283359	NM_001033257	ENSMUSG00000062866	Phactr2	AV158170|BC012871	phosphatase and actin regulator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-99443648-4	chr10	99443545	99443745	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-165526.0	NR_038019	100504202.0	Mm.403801	NR_038019	ENSMUSG00000111962	Gm20110	-	predicted gene, 20110	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-13301598-2	chr1	13301498	13301698	+	650.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008678, intron 1 of 22)	intron (NM_008678, intron 1 of 22)	70831.0	NM_001302702	17978.0	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-66122795-1	chr5	66122695	66122895	+	545.0	f1_c57bl6.idr	intron (NM_001127382, intron 2 of 7)	intron (NM_001127382, intron 2 of 7)	-24616.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	0.710697582998674	-0.0641575988835002	0.390965863341589	0.234629257153222	-0.0794727789960342	-0.0629534308740914	-0.0683236364334884	-0.0729101276774491	-3.94520707270213	0.0759763554533251	1
Merged-chr13-28457634-3	chr13	28457534	28457734	+	623.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	253239.0	NR_105787	102466635.0		NR_105787	ENSMUSG00000099158	Mir6368	Gm27800|mmu-mir-6368	microRNA 6368	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28085131-4	chr17	28085026	28085226	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4487.0	NM_001085555	21463.0	Mm.29758	NM_013687	ENSMUSG00000062859	Tcp11	D17Ken1|Tcp-11	t-complex protein 11	protein-coding	3.70082662105164	2.52999282124802	3.40420442160051	2.53104514437369	3.82502428668233	3.4567992025529	3.43038235585519	3.48090404356641	0.63448752242899	0.291794169324703	0.796128548904676
Merged-chr7-19888037-3	chr7	19887948	19888148	+	785.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177036)	promoter-TSS (NM_177036)	-83.0	NM_177036	319930.0	Mm.215839	NM_177036	ENSMUSG00000049848	Ceacam19	C130022P09Rik|CEAL1	carcinoembryonic antigen-related cell adhesion molecule 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-17215209-4	chr10	17215105	17215305	+	953.974976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-119423.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	1.77972941572649	1.35788564347041	2.14868830897449	2.33060412414251	1.04336426863825	1.89392738805309	1.82815132691476	1.29449311672348	-1.1661151728425	0.29708054163483	0.80018568054389
Merged-chr3-96905781-2	chr3	96905681	96905881	+	623.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026229)	promoter-TSS (NM_026229)	-483.0	NM_026229	67549.0	Mm.46722	NM_026229	ENSMUSG00000028096	Gpr89	4933412D19Rik|Gpr89a|SH120	G protein-coupled receptor 89	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-50504678-4	chr17	50504574	50504774	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-4873.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	4.91242277732176	4.72449542203745	3.86491495952058	4.76446467385822	5.18852571640191	4.90072888400089	4.99919028239108	4.70519422102887	0.407452012180467	0.259164544740658	0.75927260363863
Merged-chr6-120915042-4	chr6	120914935	120915135	+	853.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007544, intron 1 of 5)	intron (NM_007544, intron 1 of 5)	1789.0	NM_007544	12122.0	Mm.235081	NM_007544	ENSMUSG00000004446	Bid	2700049M22Rik|AI875481|AU022477	BH3 interacting domain death agonist	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127170042-2	chr10	127169942	127170142	+	888.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008080, exon 8 of 11)	exon (NM_008080, exon 8 of 11)	4211.0	NM_001358578	14421.0	Mm.386762	NM_008080	ENSMUSG00000006731	B4galnt1	4933429D13Rik|Gal-NAc-T|GalNAc-T|GalNAcT|Galgt1|Ggm-2|Ggm2	beta-1,4-N-acetyl-galactosaminyl transferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-46740182-2	chr18	46740082	46740282	+	767.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026217, intron 1 of 3)	intron (NM_026217, intron 1 of 3)	1397.0	NM_026217	67526.0	Mm.9852	NM_026217	ENSMUSG00000032905	Atg12	4931423H11Rik|A330058M13Rik|Apg12l|Atg12l	autophagy related 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83052048-2	chr6	83051948	83052148	+	578.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_013586, exon 14 of 14)	3' UTR (NM_013586, exon 14 of 14)	2337.0	NR_106007	102465630.0		NR_106007	ENSMUSG00000099035	Mir7040	Gm27489|mmu-mir-7040	microRNA 7040	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-148169939-3	chr4	148169885	148170085	+	757.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	9317.0	NM_176848	230904.0	Mm.262287	NM_176848	ENSMUSG00000041556	Fbxo2	FBG1|FBX2|Fbs1|Fbs2|NFB42|Prpl4	F-box protein 2	protein-coding	-1.58994551673671	-1.55912852307891	-1.56844783632235	-1.57610299769523	-1.18549093183599	-1.55710898902261	-1.56633814807757	-1.57473272746952	1.78703309985663	0.610309988231842	1
Merged-chr2-180972593-1	chr2	180972493	180972693	+	736.0	f1_c57bl6.idr	intron (NM_145760, intron 5 of 13)	intron (NM_145760, intron 5 of 13)	5293.0	NM_001177706	228998.0	Mm.33765	NM_145760	ENSMUSG00000027575	Arfgap1	AI115377|Arf1gap	ADP-ribosylation factor GTPase activating protein 1	protein-coding	-1.8418762459921	-1.8125357239735	-1.82140854000656	-1.82869693527674	-1.56059678980999	-1.8106129477253	-1.81939992894326	-1.82739231600805	1.3620893379502	0.699511506488145	1
Merged-chr1-93444470-2	chr1	93444370	93444570	+	687.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133808, intron 1 of 27)	intron (NM_133808, intron 1 of 27)	1231.0	NM_001301364	110611.0	Mm.30012	NM_133808	ENSMUSG00000034088	Hdlbp	1110005P14Rik|AA960365|AI118566|D1Ertd101e	high density lipoprotein (HDL) binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-123800002-4	chr9	123799877	123800077	+	892.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110253, intron 15 of 17)	G-rich|Low_complexity|Low_complexity	-6500.0	NM_030712	80901.0	Mm.124289	NM_030712	ENSMUSG00000048521	Cxcr6	BB217514|BONZO|STRL33	chemokine (C-X-C motif) receptor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-73172703-4	chr14	73172587	73172787	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134083, intron 10 of 14)	intron (NM_134083, intron 10 of 14)	29902.0	NR_033185	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-86686894-3	chr4	86686874	86687074	+	851.1333619999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16915.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	1.88572383909359	1.01632346414898	2.1544465703507	0.978534103468474	1.81073279192869	1.02098422991386	1.59822821005331	2.18161262232135	0.275879640522816	0.82930929722935	0.998431161219273
Merged-chr8-122430419-4	chr8	122430321	122430521	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301284, intron 1 of 4)	intron (NM_001301284, intron 1 of 4)	2519.0	NM_001301284	13057.0	Mm.271671	NM_007806	ENSMUSG00000006519	Cyba	b558|nmf333|p22-phox|p22phox	cytochrome b-245, alpha polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-134070942-3	chr1	134070874	134071074	+	754.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8181.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-111996069-4	chr10	111995972	111996172	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028608, intron 1 of 5)	L1MA7|LINE|L1	1192.0	NM_028608	73690.0	Mm.173790	NM_028608	ENSMUSG00000056888	Glipr1	2410114O14Rik|RTVP-1|RTVP1|mRTVP-1	GLI pathogenesis-related 1 (glioma)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-137960138-1	chr4	137960038	137960238	+	730.0	f1_c57bl6.idr	intron (NM_199307, intron 18 of 19)	B2_Mm2|SINE|B2	-33318.0	NM_001256198	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	1.87757899953031	2.56028215392427	2.2034456597535	3.35369569937486	2.66277761714791	1.93583936730307	1.37343155278554	2.88052302598682	-0.554991524384046	0.543705120265409	0.955585568541497
Merged-chr4-117140282-2	chr4	117140172	117140372	+	695.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6309.0	NM_001313916	12795.0	Mm.259022	NM_013807	ENSMUSG00000028680	Plk3	Cnk|Fnk|PLK-3|PRK	polo like kinase 3	protein-coding	0.264164312333313	0.295001881047099	0.497533894388512	1.36273672971018	0.266136531246117	0.297219351628714	0.503599861096397	1.21437257899716	-0.28724661397923	0.877180789060649	1
Merged-chr1-194878651-2	chr1	194878551	194878751	+	596.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56650.0	NR_039539	100628615.0		NR_039539	ENSMUSG00000092633	Mir3962	mmu-mir-3962|mu-mir-3962	microRNA 3962	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-74906164-4	chr14	74906077	74906277	+	839.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033439, intron 1 of 19)	intron (NM_001033439, intron 1 of 19)	41700.0	NM_001252132	380916.0	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-46003883-2	chr9	46003783	46003983	+	866.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357241, intron 1 of 5)	intron (NM_001357241, intron 1 of 5)	8807.0	NM_001357241	18475.0	Mm.200859	NM_008775	ENSMUSG00000003131	Pafah1b2	2610005M20Rik|AI747451|AU021353|Pafahb|mus[b]	platelet-activating factor acetylhydrolase, isoform 1b, subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-120667237-4	chr4	120667133	120667333	+	855.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_019563, exon 1 of 1)	exon (NM_019563, exon 1 of 1)	670.0	NM_019563	56222.0	Mm.272646	NM_019563	ENSMUSG00000070803	Cited4	MRG-2|Mrg2	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-160252130-4	chr2	160252023	160252223	+	969.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	75371.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-116264641-4	chr8	116264545	116264745	+	851.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-240370.0	NM_029297	75465.0	Mm.23114	NM_029297	ENSMUSG00000034467	Dynlrb2	1700009A04Rik|DNLC2B|Dncl2b	dynein light chain roadblock-type 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-145921603-2	chr3	145921503	145921703	+	595.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2659.0	NM_009740	12042.0	Mm.239141	NM_009740	ENSMUSG00000028191	Bcl10	AI132454|BCL-10|C81403|CARMEN|CIPER|CLAP|ME10|cE10	B cell leukemia/lymphoma 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-65730123-4	chr17	65730026	65730226	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133685, intron 1 of 6)	intron (NM_133685, intron 1 of 6)	42626.0	NM_133685	106572.0	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128694757-2	chr2	128694657	128694857	+	641.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-4158.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-111642736-5	chr8	111642675	111642875	+	906.3800050000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011742)	promoter-TSS (NM_011742)	-668.0	NM_001037665	22640.0	Mm.4184	NM_011742	ENSMUSG00000055835	Zfp1	Fnp-1|Zfp-1|mkr-1	zinc finger protein 1	protein-coding	4.21330835920787	3.23539026495056	3.52272013976991	4.29400426428721	3.56550312256124	3.67065664525623	3.26095366328904	3.25921594254224	-0.66786402414871	0.204646872231257	0.691908652929913
Merged-chr7-29383499-3	chr7	29383385	29383585	+	866.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081028, intron 8 of 22)	intron (NM_001081028, intron 8 of 22)	79480.0	NM_013874	29861.0	Mm.101885	NM_013874	ENSMUSG00000030584	Dpf1	Neud4	D4, zinc and double PHD fingers family 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-117123551-2	chr2	117123451	117123651	+	672.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001277256, intron 1 of 4)	intron (NM_001277256, intron 1 of 4)	2480.0	NM_033524	114715.0	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-96765834-4	chr11	96765747	96765947	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11708.0	NM_028965	74479.0	Mm.270781	NM_028965	ENSMUSG00000020876	Snx11	4933439F10Rik|A930041K09Rik|AI117694	sorting nexin 11	protein-coding	5.35224264477524	4.62008609772662	5.62912854471	6.28614626316611	5.65330493844834	5.24598875307501	5.99193869181384	6.56365674723855	0.390213488341121	0.268710269346282	0.771990954092706
Merged-chr1-125466827-4	chr1	125466735	125466935	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31108.0	NM_001205385	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21557571-2	chr9	21557471	21557671	+	796.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153141, intron 1 of 14)	intron (NM_153141, intron 1 of 14)	10677.0	NM_153141	59035.0	Mm.178115	NM_021531	ENSMUSG00000032185	Carm1	Prmt4	coactivator-associated arginine methyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-148069932-4	chr4	148069840	148070040	+	984.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	A-rich|Low_complexity|Low_complexity	18124.0	NM_009642	11610.0	Mm.46247	NM_009642	ENSMUSG00000029007	Agtrap	3300002E14Rik|AT1R|Atrap|D4Wsu124e	angiotensin II, type I receptor-associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-106620338-1	chr1	106620238	106620438	+	814.0	f0_c57.idr	intron (NM_009741, intron 1 of 1)	intron (NM_009741, intron 1 of 1)	-73707.0	NR_106164	102466254.0		NR_106164	ENSMUSG00000098344	Mir3473f	Gm27846|mmu-mir-3473f	microRNA 3473f	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81155465-3	chr15	81155366	81155566	+	744.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001082536, intron 1 of 13)	intron (NM_001082536, intron 1 of 13)	35291.0	NM_001082536	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-173737178-4	chr1	173737070	173737270	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001204910, intron 1 of 7)	ORR1E|LTR|ERVL-MaLR	4639.0	NM_001204910	226691.0	Mm.440876	NM_001204910	ENSMUSG00000073490	Ifi207	AI607873|Pyhin-A|pyhinA	interferon activated gene 207	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-23661026-1	chr17	23660926	23661126	+	561.0	f1_c57bl6.idr	intron (NM_153784, intron 1 of 9)	intron (NM_153784, intron 1 of 9)	520.0	NM_153784	212733.0	Mm.59997	NM_153784	ENSMUSG00000043782	Bicdl2	BICDR-2|Ccdc64b	BICD family like cargo adaptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-45255465-4	chr13	45255356	45255556	+	968.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-134286.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-11006100-6	chr8	11006100	11006300	+	860.2999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081212, exon 1 of 2)	exon (NM_001081212, exon 1 of 2)	-1650.0	NR_046017	619321.0	Mm.403007	NR_046017	ENSMUSG00000096938	9530052E02Rik	-	RIKEN cDNA 9530052E02 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-121584330-4	chr5	121584232	121584432	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009656, intron 1 of 12)	intron (NM_009656, intron 1 of 12)	9492.0	NM_009656	11669.0	Mm.284446	NM_009656	ENSMUSG00000029455	Aldh2	AHD-M1|ALDH-E2|ALDHI|Ahd-5|Ahd5	aldehyde dehydrogenase 2, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-29070147-2	chr17	29070047	29070247	+	563.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_036469, intron 1 of 1)	RSINE1|SINE|B4	8979.0	NR_036469	100504267.0	Mm.438550	NR_036469	ENSMUSG00000085912	Trp53cor1	Gm16197|linc-p21|lincRNA-p21	tumor protein p53 pathway corepressor 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-8983497-4	chr19	8983380	8983580	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5804.0	NR_104460	66395.0	Mm.203866	NM_009643	ENSMUSG00000069833	Ahnak	DY6	AHNAK nucleoprotein (desmoyokin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-5518121-2	chr15	5518021	5518221	+	866.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045274, intron 1 of 4)	intron (NR_045274, intron 1 of 4)	21803.0	NR_045274	71432.0	Mm.291087	NR_045274	ENSMUSG00000110018	5430437J10Rik	-	RIKEN cDNA 5430437J10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-165119297-2	chr1	165119197	165119397	+	825.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27367.0	NR_040480	75857.0	Mm.109021	NR_040480	ENSMUSG00000102408	4930568G15Rik	-	RIKEN cDNA 4930568G15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-33319296-2	chr12	33319196	33319396	+	552.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033436, intron 1 of 7)	intron (NM_001033436, intron 1 of 7)	16781.0	NM_001033436	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-184023260-4	chr1	184023167	184023367	+	866.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10731.0	NM_028516	73363.0	Mm.50115	NM_028516	ENSMUSG00000044854	1700056E22Rik	-	RIKEN cDNA 1700056E22 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80799395-3	chr7	80799296	80799496	+	818.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016721, intron 2 of 37)	intron (NM_016721, intron 2 of 37)	3935.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	0.661782234272953	1.16061841035401	0.391920593655326	1.1459346720598	0.669167343637581	0.611711959410683	0.393764173375448	0.386581471528386	-2.18654221055499	0.210503197490574	1
Merged-chr5-149641757-3	chr5	149641603	149641803	+	886.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5367.0	NM_001347534	15505.0	Mm.270681	NM_013559	ENSMUSG00000029657	Hsph1	105kDa|AI790491|Hsp105|Hsp110|hsp-E7I|hsp110/105	heat shock 105kDa/110kDa protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-18765812-4	chr2	18765731	18765931	+	984.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4969.0	NR_126079	100041479.0	Mm.393659	NR_126079	ENSMUSG00000092353	Gm3363	-	predicted gene 3363	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98937608-4	chr11	98937504	98937704	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177302)	promoter-TSS (NM_001177302)	-92.0	NM_009024	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-107849626-2	chr14	107849526	107849726	+	791.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR44A|LTR|ERVK	1064613.0	NM_199065	76965.0	Mm.257268	NM_199065	ENSMUSG00000075478	Slitrk1	3200001I04Rik	SLIT and NTRK-like family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-113865948-4	chr13	113865842	113866042	+	612.470825	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172595, intron 1 of 4)	intron (NM_172595, intron 1 of 4)	71434.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-75186436-4	chr14	75186334	75186534	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008879, intron 2 of 16)	intron (NM_008879, intron 2 of 16)	50009.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-146169164-2	chr3	146169064	146169264	+	615.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001005846, intron 2 of 13)	intron (NM_001005846, intron 2 of 13)	18990.0	NM_001005846	68279.0	Mm.116862	NM_026656	ENSMUSG00000011008	Mcoln2	3300002C04Rik|AI549968|C86638|TRPML2	mucolipin 2	protein-coding	-1.84297643846673	-1.8130099360596	-1.82207205372894	-1.6869274651563	-1.84087284540582	-1.81104613735712	-1.82002058892457	-1.6855950118199	0.037684011990387	0.991491645451152	1
Merged-chr14-17539517-3	chr14	17539414	17539614	+	951.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-121446.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-85601023-4	chr1	85600921	85601121	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001013817, exon 1 of 17)	5' UTR (NM_001013817, exon 1 of 17)	318.0	NM_001013817	434484.0	Mm.445821	NM_001013817	ENSMUSG00000070031	Sp140	-	Sp140 nuclear body protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-93945571-4	chr10	93945474	93945674	+	991.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18289.0	NR_029764	723908.0		NR_029764	ENSMUSG00000065607	Mir331	Mirn331|mmu-mir-331	microRNA 331	ncRNA	4.35101437980105	5.11243937013171	4.51041489436071	4.25027267707454	3.79687795107704	4.24820010891904	3.46265896353339	2.5210761802069	-1.27915406504664	0.00945533177139483	0.104751306313696
Merged-chr8-126565398-4	chr8	126565260	126565460	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28076.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-68796217-4	chr2	68796115	68796315	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65226.0	NM_172856	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-129418134-4	chr6	129418034	129418234	+	742.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205363, intron 4 of 6)	intron (NM_001205363, intron 4 of 6)	9272.0	NM_001205364	232414.0	Mm.391518	NM_172732	ENSMUSG00000046080	Clec9a	9830005G06Rik|DNGR-1	C-type lectin domain family 9, member a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-12229759-2	chr12	12229679	12229879	+	875.166626	f0_balb.idr|f1_balb.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-32360.0	NM_029758	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	2.46301401812638	1.99633398724031	2.84165408539419	2.61606499255432	3.42445279763456	4.13848362416871	4.00980608501707	4.13140679826305	2.32351313303497	0.00012065821162076	0.00354817946820067
Merged-chr1-128642440-4	chr1	128642330	128642530	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50131.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	3.74885316231265	4.17234589331056	3.21495465139155	3.01176901507667	3.66699906656426	3.23915528041386	4.01623071692813	3.42043669610813	0.00847482983449553	0.987664708302445	0.998431161219273
Merged-chr3-95174340-4	chr3	95174215	95174415	+	971.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011351)	TTS (NM_011351)	9976.0	NM_011351	20360.0	Mm.23662	NM_011351	ENSMUSG00000038777	Sema6c	Semay|mKIAA1869	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132601491-4	chr4	132601403	132601603	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	37436.0	NM_001081211	19204.0	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70212079-2	chr14	70211979	70212179	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4408.0	NM_011366	20410.0	Mm.5068	NM_011366	ENSMUSG00000022091	Sorbs3	SCAM-1|SH3P3|Sh3d4|vinexin-g	sorbin and SH3 domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100365814-2	chr11	100365714	100365914	+	692.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9673.0	NM_010404	15114.0	Mm.281700	NM_010404	ENSMUSG00000006930	Hap1	HAP-1	huntingtin-associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-45657804-3	chr16	45657680	45657880	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172455, intron 17 of 17)	intron (NM_172455, intron 17 of 17)	-3662.0	NM_145389	212998.0	Mm.97511	NM_145389	ENSMUSG00000033187	BC016579	-	cDNA sequence, BC016579	protein-coding	5.8349161584936	5.41650052900934	6.04960184277815	5.21764003716555	3.64232576466823	2.00787073228379	3.71739557035172	3.68007870291206	-2.76475388818363	6.10598812638169e-11	1.37361835388114e-08
Merged-chr5-92441661-4	chr5	92441569	92441769	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007644, exon 12 of 12)	3' UTR (NM_007644, exon 12 of 12)	-6470.0	NM_183392	269113.0	Mm.275289	NM_183392	ENSMUSG00000034826	Nup54	3110079L04Rik|54kDa	nucleoporin 54	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180886966-2	chr1	180886866	180887066	+	548.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6142.0	NM_177099	320202.0	Mm.87078	NM_177099	ENSMUSG00000066652	Lefty2	6030463A22Rik|Ebaf|Lefta|Leftb|lefty-2|lefty-B	left-right determination factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-60994476-2	chr8	60994376	60994576	+	628.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001293639, intron 1 of 31)	intron (NM_001293639, intron 1 of 31)	1283.0	NM_175089	18004.0	Mm.486881	NM_175089	ENSMUSG00000031644	Nek1	D8Ertd790e|kat	NIMA (never in mitosis gene a)-related expressed kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117578863-2	chr8	117578763	117578963	+	717.400024	f1_balb.idr|f1_c57bl6.idr	intron (NM_172285, intron 10 of 32)	B1F|SINE|Alu	80588.0	NM_172285	234779.0	Mm.192699	NM_172285	ENSMUSG00000034330	Plcg2	PLC-gamma-2|PLCgamma2|Plcg-2	phospholipase C, gamma 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-116472771-4	chr6	116472684	116472884	+	873.56665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11606.0	NM_009662	11689.0	Mm.41072	NM_009662	ENSMUSG00000025701	Alox5	5-LO|5-LOX|5LO|5LX|AI850497|F730011J02	arachidonate 5-lipoxygenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26939650-4	chr17	26939564	26939764	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026307)	promoter-TSS (NM_026307)	-126.0	NM_026307	67675.0	Mm.439919	NM_026307	ENSMUSG00000024194	Cuta	0610039D01Rik|1810022E02Rik|1810060C03Rik|2700094G22Rik|AI326454	cutA divalent cation tolerance homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-118812143-4	chr10	118812062	118812262	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56741.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84004884-4	chr8	84004801	84005001	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_106191)	promoter-TSS (NR_106191)	-727.0	NR_106191	102466886.0		NR_106191	ENSMUSG00000098823	Mir8111	Gm27823|mmu-mir-8111	microRNA 8111	ncRNA	5.35639221671838	5.48244155368844	5.04905748911045	5.42200254231503	4.90129762572915	4.98660986244204	5.50750406164439	5.52168687759364	-0.0914617314834601	0.759980740837332	0.998431161219273
Merged-chr6-91474741-1	chr6	91474641	91474841	+	1000.0	f1_c57bl6.idr	intron (NM_028766, intron 1 of 11)	intron (NM_028766, intron 1 of 11)	990.0	NM_028766	74122.0	Mm.38801	NM_028766	ENSMUSG00000030095	Tmem43	1200015A22Rik|LUMA	transmembrane protein 43	protein-coding	1.79676858251555	1.87274265194481	3.11651527101737	2.0336810718259	1.31577376141493	2.19487819748237	1.97782827899984	1.12519255539982	-1.48013379343541	0.151923423362298	0.605573831727858
Merged-chr13-78211834-2	chr13	78211734	78211934	+	549.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045195, intron 1 of 2)	intron (NR_045195, intron 1 of 2)	-12961.0	NM_010151	13865.0	Mm.439653	NM_010151	ENSMUSG00000069171	Nr2f1	COUP-TF1|COUP-TFI|COUPTFA|EAR-3|EAR3|Erbal3|SVP44|Tcfcoup1	nuclear receptor subfamily 2, group F, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81336625-2	chr10	81336525	81336725	+	790.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6641.0	NM_148951	209047.0	Mm.218755	NM_148951	ENSMUSG00000034872	Gipc3	Ahl5|Rgs19ip3	GIPC PDZ domain containing family, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125364072-1	chr6	125363972	125364172	+	627.666687	f1_c57bl6.idr	intron (NM_198604, intron 15 of 16)	intron (NM_198604, intron 15 of 16)	14349.0	NM_011609	21937.0	Mm.1258	NM_011609	ENSMUSG00000030341	Tnfrsf1a	CD120a|FPF|TNF-R|TNF-R-I|TNF-R1|TNF-R55|TNF-alphaR1|TNFAR|TNFR60|TNFRI|TNFRp55|TNFalpha-R1|Tnfr-2|Tnfr1|p55|p55-R	tumor necrosis factor receptor superfamily, member 1a	protein-coding	1.33780590593857	2.6604556620222	2.80302110841587	2.07421257910182	1.34832210880926	1.22001007516856	1.85975705126833	2.66292242201306	-0.947891298671553	0.366144971426673	0.861036332257394
Merged-chr13-108390798-1	chr13	108390698	108390898	+	562.0	f0_balb.idr	Intergenic	MTD|LTR|ERVL-MaLR	74461.0	NM_178683	218581.0	Mm.32318	NM_178683	ENSMUSG00000021697	Depdc1b	9830132O03|AW260467|XTP1	DEP domain containing 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-99184231-3	chr13	99184148	99184348	+	881.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001004149)	promoter-TSS (NM_001004149)	-575.0	NM_001004149	238803.0	Mm.343207	NM_001004149	ENSMUSG00000050919	Zfp366	DC-SCRIPT|Znf366	zinc finger protein 366	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129634464-1	chr2	129634364	129634564	+	596.0	f1_c57bl6.idr	Intergenic	Intergenic	39002.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	0.488813849945567	0.864488505043629	0.689314575908208	0.519464012243575	1.15563069775704	0.366011382952848	0.358659668298644	0.522660123114035	0.0797014415283639	0.962196623338218	1
Merged-chr3-109352206-2	chr3	109352106	109352306	+	576.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_020505, intron 1 of 26)	intron (NM_020505, intron 1 of 26)	11523.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-102836831-2	chr14	102836731	102836931	+	550.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	145801.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-148674467-1	chr5	148674367	148674567	+	568.5	f0_c57.idr	Intergenic	Intergenic	-67373.0	NR_028285	70138.0	Mm.417834	NR_028285	ENSMUSG00000086494	2210417A02Rik	AV081004	RIKEN cDNA 2210417A02 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-72320292-4	chr8	72320184	72320384	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008452, intron 2 of 2)	PB1D7|SINE|Alu	1222.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	4.21247450893517	4.18337856765871	4.04834493732394	3.47253496145589	4.44726451852398	4.2127134779722	4.37238468757429	4.29878830123783	0.439106138345561	0.296444716187006	0.7993201507169
Merged-chr1-194989208-4	chr1	194989097	194989297	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12238.0	NR_033564	320400.0	Mm.417608	NR_033564	ENSMUSG00000097325	Gm16897	C030002c11rik	predicted gene, 16897	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-91719625-2	chr6	91719525	91719725	+	798.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_009320, intron 2 of 14)	intron (NM_009320, intron 2 of 14)	35558.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-12169574-3	chr18	12169502	12169702	+	678.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029623, intron 2 of 19)	intron (NM_029623, intron 2 of 19)	872.0	NM_029623	76482.0	Mm.196596	NM_029623	ENSMUSG00000024410	3110002H16Rik	2400010D15Rik|Mic-1|Mic1|Rmc1|Wdr98	RIKEN cDNA 3110002H16 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97401040-2	chr11	97400968	97401168	+	831.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38517.0	NM_138657	192157.0	Mm.34339	NM_138657	ENSMUSG00000038485	Socs7	2310063P06Rik|C85125|Nap4	suppressor of cytokine signaling 7	protein-coding	-0.811871916059096	-1.15223696528766	-1.16265319256742	-1.17120939178942	-0.911301499403313	-1.14997972538381	-1.16029518702849	-1.16967783621951	-0.385190450359539	0.909269396991215	1
Merged-chr4-101284090-3	chr4	101283968	101284168	+	749.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18786.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-86235515-2	chr15	86235415	86235615	+	914.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145476, intron 2 of 12)	intron (NM_145476, intron 2 of 12)	21056.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-35727686-2	chr7	35727586	35727786	+	615.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178704, intron 4 of 18)	L1_Mur3|LINE|L1	26768.0	NM_178704	233115.0	Mm.257808	NM_178704	ENSMUSG00000043671	Dpy19l3	6030410G08|9330164H19Rik	dpy-19-like 3 (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-115375853-2	chr6	115375765	115375965	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_001308354, intron 1 of 7)	Lx8b|LINE|L1	13516.0	NM_001308354	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81422238-2	chr15	81422138	81422338	+	649.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_177310, intron 2 of 8)	intron (NM_177310, intron 2 of 8)	-13965.0	NM_021317	57755.0	Mm.440590	NM_021317	ENSMUSG00000047108	Dnajb7	4933424H20Rik|Dj5|mDj5	DnaJ heat shock protein family (Hsp40) member B7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-105356582-4	chr1	105356487	105356687	+	791.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_151538, exon 1 of 2)	non-coding (NR_151538, exon 1 of 2)	123.0	NM_178779	320311.0	Mm.389162	NM_178779	ENSMUSG00000047496	Rnf152	A930029B02Rik	ring finger protein 152	protein-coding	1.5903811017919	1.29663839621454	0.936669857054517	0.726960055678443	1.26081962477133	1.5590911548654	0.943016398140957	0.728608929926717	-0.0926653681327551	0.948317363852458	0.998431161219273
Merged-chr15-83466348-2	chr15	83466248	83466448	+	553.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1742.0	NM_001358643	23970.0	Mm.23978	NM_011862	ENSMUSG00000016664	Pacsin2	AI197433	protein kinase C and casein kinase substrate in neurons 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-105686538-1	chr3	105686438	105686638	+	955.0	f1_c57bl6.idr	intron (NM_017397, intron 2 of 10)	intron (NM_017397, intron 2 of 10)	1033.0	NM_017397	53975.0	Mm.272826	NM_017397	ENSMUSG00000027905	Ddx20	GEMIN3|dp103	DEAD (Asp-Glu-Ala-Asp) box polypeptide 20	protein-coding	0.200946029615757	0.427559543318624	-0.035953702957064	-0.0393852364773891	0.402537080036728	-0.0304746121265629	-0.0349701548514916	0.246490682709758	0.058668595669332	0.978285173136579	1
Merged-chr7-104206358-3	chr7	104206251	104206451	+	862.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12444.0	NM_001013616	94088.0	Mm.274843	NM_001013616	ENSMUSG00000072244	Trim6	C430046K18Rik|D7Ertd684e	tripartite motif-containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-32937110-4	chr5	32936956	32937156	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360014, intron 24 of 40)	intron (NM_001360014, intron 24 of 40)	73335.0	NM_001170567	277854.0	Mm.101524	NM_177786	ENSMUSG00000037426	Depdc5	AV016528	DEP domain containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-89179275-1	chr18	89179175	89179375	+	545.0	f1_balb.idr	Intergenic	Intergenic	-18152.0	NM_178687	225825.0	Mm.139293	NM_178687	ENSMUSG00000034028	Cd226	BC051526|DNAM-1|DNAM1|Pta1|TLiSA1	CD226 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-146173629-2	chr4	146173529	146173729	+	585.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177545, intron 2 of 4)	RMER17B2|LTR|ERVK	15939.0	NM_001177545	667666.0	Mm.459230	NM_001177545	ENSMUSG00000066007	Zfp600	Gm13164	zinc finger protein 600	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-181680838-2	chr2	181680738	181680938	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001356342, exon 1 of 10)	5' UTR (NM_001356342, exon 1 of 10)	541.0	NM_001356342	21400.0	Mm.24245	NM_009326	ENSMUSG00000059540	Tcea2	AI326274|S-II-T1|SII-T1|Tceat	transcription elongation factor A (SII), 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-103965760-3	chr11	103965680	103965880	+	884.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001304574)	promoter-TSS (NM_001304574)	-945.0	NM_001304574	11841.0	Mm.5061	NM_007477	ENSMUSG00000062421	Arf2	-	ADP-ribosylation factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85590257-2	chr12	85590157	85590357	+	637.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8848.0	NM_001205052	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-28513689-2	chr2	28513589	28513789	+	772.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009058, intron 1 of 17)	CpG	522.0	NM_001145834	19730.0	Mm.5236	NM_009058	ENSMUSG00000026821	Ralgds	Gnds|Rgds|mKIAA1308	ral guanine nucleotide dissociation stimulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-155848079-2	chr4	155847979	155848179	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356381, intron 1 of 15)	intron (NM_001356381, intron 1 of 15)	677.0	NM_001356381	13542.0	Mm.3400	NM_010091	ENSMUSG00000029071	Dvl1	Dvl|mKIAA4029	dishevelled segment polarity protein 1	protein-coding	2.6924953625154	3.00932003249673	2.7208792198045	2.2922811195217	2.43381433738666	2.93615128344097	2.63169568563945	2.30360228715356	-0.219284390788719	0.764206196815368	0.998431161219273
Merged-chr2-4493339-4	chr2	4493218	4493418	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 4 of 23)	intron (NM_001177843, intron 4 of 23)	-66436.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126323983-2	chr7	126323883	126324083	+	916.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44062.0	NR_106025	102466797.0		NR_106025	ENSMUSG00000099017	Mir7058	Gm27766|mmu-mir-7058	microRNA 7058	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-20469441-4	chr11	20469354	20469554	+	865.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73799.0	NM_021372	58172.0	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	0.123616410267188	0.0716703081913965	-0.410245437992515	-0.413163399084878	-0.276206981728312	-0.405596246309992	-0.409409970029324	-0.412654152184165	-2.61858827576364	0.302899583185532	1
Merged-chr2-180779778-2	chr2	180779678	180779878	+	988.125	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2878.0	NM_080641	140489.0	Mm.134062	NM_080641	ENSMUSG00000045493	Bhlhe23	A930001L02Rik|BETA4|Beta3b|Bhlhb4	basic helix-loop-helix family, member e23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-25577795-2	chr2	25577695	25577895	+	876.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001005424, exon 1 of 1)	exon (NM_001005424, exon 1 of 1)	2304.0	NM_001005424	381353.0	Mm.379511	NM_001005424	ENSMUSG00000029419	Gm996	Ajm1	predicted gene 996	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-51673669-2	chr3	51673569	51673769	+	608.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_174995, intron 2 of 4)	intron (NM_174995, intron 2 of 4)	12490.0	NM_001310482	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-22265426-4	chr16	22265329	22265529	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001330555, intron 1 of 9)	CpG	576.0	NM_001330554	20462.0	Mm.210352	NM_009186	ENSMUSG00000022858	Tra2b	5730405G21Rik|D16Ertd266e|SIG-41|Sfrs10|Silg41|TRA2beta	transformer 2 beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81135256-6	chr10	81135142	81135342	+	918.944458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(GAAA)n|Simple_repeat|Simple_repeat	-1029.0	NM_010731	16969.0	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-93803491-3	chr10	93803415	93803615	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16A|LTR|ERVL	-28040.0	NM_001206851	327799.0	Mm.491598	NM_183199	ENSMUSG00000020020	Usp44	E430004F17Rik	ubiquitin specific peptidase 44	protein-coding	3.68557177003335	2.06694396567111	3.22410271809174	4.4843657637561	1.80861786837468	2.94449241925226	2.83638498573383	1.38207678099187	-2.03404317869142	0.0121197439749925	0.125010291107088
Merged-chr1-91045013-1	chr1	91044913	91045113	+	658.0	f0_balb.idr	intron (NM_001111312, intron 1 of 12)	intron (NM_001111312, intron 1 of 12)	-8431.0	NM_001111311	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-174330376-1	chr2	174330276	174330476	+	1000.0	f0_balb.idr	exon (NM_001310083, exon 2 of 13)	exon (NM_001310083, exon 2 of 13)	287.0	NM_001077510	14683.0	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-130061796-2	chr3	130061696	130061896	+	723.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207209)	promoter-TSS (NM_207209)	-889.0	NM_207209	99683.0	Mm.192303	NM_207209	ENSMUSG00000001052	Sec24b	AI605202|SEC24	Sec24 related gene family, member B (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27469469-2	chr2	27469369	27469569	+	801.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113573, intron 1 of 11)	intron (NM_001113573, intron 1 of 11)	5929.0	NM_023336	67382.0	Mm.28721	NM_023336	ENSMUSG00000026918	Brd3	2410084F24Rik|AW060456|Fsrg2|ORFX|RINGL3	bromodomain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-114804221-1	chr5	114804121	114804321	+	570.0	f1_balb.idr	intron (NM_026718, intron 14 of 14)	intron (NM_026718, intron 14 of 14)	9755.0	NR_027818	66236.0	Mm.268546	NR_027817	ENSMUSG00000072694	1500011B03Rik	AI415201|AV141149|AW556386	RIKEN cDNA 1500011B03 gene	ncRNA	-1.84456824087626	-1.81369603968745	-1.82303204814395	-1.83070092346192	-1.84240106943552	-1.51787681909439	-1.82091858046888	-1.82932819844659	1.64481029852639	0.639921510788462	1
Merged-chr15-50784272-1	chr15	50784172	50784372	+	605.0	f0_balb.idr	intron (NM_001310485, intron 5 of 7)	intron (NM_001310485, intron 5 of 7)	104777.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-51657370-1	chr1	51657270	51657470	+	636.0	f0_c57.idr	Intergenic	Lx8|LINE|L1	-60652.0	NR_151621	100045066.0	Mm.404734	NR_151621		Gm17767	-	predicted gene, 17767	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-136194563-4	chr1	136194469	136194669	+	965.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001329610, intron 12 of 22)	L1MEf|LINE|L1	18259.0	NM_001329610	76422.0	Mm.159735	NM_001329610		Mroh3	2310006M14Rik	maestro heat-like repeat family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-125201856-3	chr4	125201761	125201961	+	678.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73980.0	NM_153159	230738.0	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28209777-2	chr17	28209677	28209877	+	918.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027185, intron 1 of 10)	intron (NM_027185, intron 1 of 10)	1999.0	NM_027185	23853.0	Mm.204731	NM_027185	ENSMUSG00000002257	Def6	2410003F05Rik|6430538D02Rik|AV094905|Ibp|Slat|Slat2|Slat6	differentially expressed in FDCP 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-44541287-2	chr11	44541193	44541393	+	578.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166553, intron 3 of 5)	intron (NM_001166553, intron 3 of 5)	21916.0	NM_001166553	74315.0	Mm.156771	NM_028862	ENSMUSG00000019189	Rnf145	3732413I11Rik|TMRF1	ring finger protein 145	protein-coding	-1.18551167796162	-1.16005248636864	-1.17110304385026	-1.01209399470354	-1.18502602943809	-0.660555406792769	-1.16860143985775	-1.17855547613505	1.59335090849861	0.626683724182891	1
Merged-chr7-64392697-4	chr7	64392592	64392792	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026483)	promoter-TSS (NM_026483)	70.0	NM_001355124	73724.0	Mm.10093	NM_028626	ENSMUSG00000033429	Mcee	1110007A04Rik	methylmalonyl CoA epimerase	protein-coding	7.63656848417984	7.65194228999884	7.69405117141044	7.31476380239733	7.49263021492053	8.00689633898367	7.9291732353052	7.36438170916324	0.14316438334565	0.397606778872119	0.883903683534674
Merged-chr5-134187558-4	chr5	134187449	134187649	+	802.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359852, intron 1 of 14)	B3|SINE|B2	3511.0	NM_053266	114674.0	Mm.218744	NM_053266	ENSMUSG00000015942	Gtf2ird2	1700012P16Rik	GTF2I repeat domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-153406398-4	chr3	153406315	153406515	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011372, intron 3 of 4)	intron (NM_011372, intron 3 of 4)	-107766.0	NR_126464	75489.0	Mm.443252	NR_126464	ENSMUSG00000105023	1700012D16Rik	-	RIKEN cDNA 1700012D16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28962420-4	chr7	28962321	28962521	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360548)	promoter-TSS (NM_001360548)	-89.0	NM_001360548	60595.0	Mm.81144	NM_021895	ENSMUSG00000054808	Actn4	C77391	actinin alpha 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-134239650-2	chr3	134239550	134239750	+	794.75	f1_balb.idr|f1_c57bl6.idr	TTS (NR_035435)	TTS (NR_035435)	933.0	NR_035435	100316832.0		NR_035435	ENSMUSG00000084564	Mir1895	Mirn1895|mmu-mir-1895	microRNA 1895	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32365336-2	chr2	32365236	32365436	+	570.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252536, intron 4 of 18)	B1_Mur1|SINE|Alu	2138.0	NM_028412	68379.0	Mm.170508	NM_028412	ENSMUSG00000039205	Ciz1	0610038H21Rik|2900056O04Rik|LSFR1|ZNF356	CDKN1A interacting zinc finger protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-44454808-2	chr10	44454708	44454908	+	800.111084	f1_balb.idr|f1_c57bl6.idr	intron (NM_007548, intron 2 of 6)	intron (NM_007548, intron 2 of 6)	3940.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-149901718-3	chr4	149901615	149901815	+	851.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029035, intron 2 of 2)	intron (NM_029035, intron 2 of 2)	53291.0	NM_029035	74646.0	Mm.30	NM_029035	ENSMUSG00000039911	Spsb1	1110014L01Rik|4930422J18Rik|AI596360|AI854583|SSB-1|SSB1	splA/ryanodine receptor domain and SOCS box containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96501591-4	chr3	96501498	96501698	+	993.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CGTG)n|Simple_repeat|Simple_repeat	-23587.0	NM_027126	69585.0	Mm.171314	NM_027126	ENSMUSG00000038403	Hfe2	2310035L15Rik|5230400G09Rik|AI414844|AI789733|DL-M|HJV|Rgmc|hemojuvelin	hemochromatosis type 2 (juvenile)	protein-coding	5.36472320481827	4.76143464932056	4.28530424498224	5.0350124657611	5.31569901135805	4.39780295583906	4.11773764206417	4.24765816117106	-0.367838631000321	0.369644600468843	0.863511665970635
Merged-chr6-71198109-4	chr6	71198022	71198222	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1757.0	NM_017399	14080.0	Mm.22126	NM_017399	ENSMUSG00000054422	Fabp1	Fabpl|L-FABP	fatty acid binding protein 1, liver	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-113220889-3	chr5	113220749	113220949	+	636.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-6060.0	NM_001033428	333048.0	Mm.332586	NM_001033428	ENSMUSG00000066964	Tmem211	Gm854	transmembrane protein 211	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-88434971-2	chr12	88434871	88435071	+	808.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361598, intron 4 of 9)	intron (NM_001361598, intron 4 of 9)	-57648.0	NR_045888	71818.0	Mm.490789	NR_045888	ENSMUSG00000113434	3200001D21Rik	-	RIKEN cDNA 3200001D21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-83659603-4	chr7	83659515	83659715	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360088, intron 12 of 18)	intron (NM_001360088, intron 12 of 18)	-4120.0	NM_001360089	16170.0	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-24385839-3	chr2	24385732	24385932	+	828.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355232)	promoter-TSS (NM_001355232)	500.0	NM_177611	215632.0	Mm.490434	NM_177611	ENSMUSG00000026979	Psd4	BC046518|EFA6B	pleckstrin and Sec7 domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-57076196-4	chr9	57076052	57076252	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011378)	promoter-TSS (NM_011378)	-103.0	NR_152107	72588.0	Mm.70350	NR_152107		2700012I20Rik	-	RIKEN cDNA 2700012I20 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-130816384-3	chr7	130816299	130816499	+	792.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081038, intron 11 of 15)	intron (NM_001081038, intron 11 of 15)	42330.0	NM_001081038	330660.0	Mm.271550	NM_001081038	ENSMUSG00000040298	Btbd16	E330040A16Rik	BTB (POZ) domain containing 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-52953002-3	chr1	52952835	52953035	+	776.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144953)	promoter-TSS (NM_144953)	-95.0	NM_144953	67080.0	Mm.236287	NM_144953	ENSMUSG00000043629	1700019D03Rik	2410136C24Rik|AA410151|smAKAP	RIKEN cDNA 1700019D03 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-182368526-3	chr1	182368426	182368626	+	689.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26920.0	NM_175127	67948.0	Mm.30737	NM_175127	ENSMUSG00000047539	Fbxo28	4833428J17Rik|5730505P19Rik|D1Ertd578e|Fbx28|mKIAA0483	F-box protein 28	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-83184117-4	chr10	83184019	83184219	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021439, intron 2 of 2)	MIR|SINE|MIR	153698.0	NM_177388	338365.0	Mm.67073	NM_177388	ENSMUSG00000034591	Slc41a2	A230035L05Rik|SLC41A1-L1	solute carrier family 41, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111944075-4	chr12	111943996	111944196	+	890.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_029464, intron 1 of 2)	intron (NR_029464, intron 1 of 2)	386.0	NR_029464	77675.0	Mm.98331	NR_029464	ENSMUSG00000113769	5033406O09Rik	9130204G15Rik	RIKEN cDNA 5033406O09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-37418557-2	chr19	37418457	37418657	+	676.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_010615, intron 21 of 21)	intron (NM_010615, intron 21 of 21)	-16284.0	NM_008245	15242.0	Mm.33896	NM_008245	ENSMUSG00000024986	Hhex	Hex|Hex1|Hhex-rs2|Prh|Prhx	hematopoietically expressed homeobox	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-77542041-3	chr15	77541932	77542132	+	803.9111330000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8717.0	NM_175391	108956.0	Mm.86391	NM_175391	ENSMUSG00000044309	Apol7c	2210421G13Rik	apolipoprotein L 7c	protein-coding	3.52988840663406	4.49783111143884	4.452805176254	4.54323548884536	3.32662134083615	2.88433614756725	3.70291485711184	3.94221271458953	-1.08799523713105	0.0292960076676996	0.233479842306285
Merged-chr5-129959288-3	chr5	129959196	129959396	+	866.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001327, intron 1 of 1)	intron (NM_001001327, intron 1 of 1)	17187.0	NM_027121	69568.0	Mm.288718	NM_027121	ENSMUSG00000066735	Vkorc1l1	2310024K08Rik	vitamin K epoxide reductase complex, subunit 1-like 1	protein-coding	0.470685817536338	0.236456573923903	0.769676675704458	0.731508256151421	0.357978489536353	0.423631911941865	0.232072488496514	0.384181959503625	-1.68211216722824	0.348734000585086	1
Merged-chr2-21111630-1	chr2	21111530	21111730	+	576.0	f0_balb.idr	Intergenic	Intergenic	93735.0	NM_027728	71233.0	Mm.27658	NM_027728	ENSMUSG00000026679	Enkur	4933434I06Rik|AU016229	enkurin, TRPC channel interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-103796556-4	chr2	103796510	103796710	+	990.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111292, intron 1 of 16)	CpG	468.0	NM_001111290	53872.0	Mm.427589	NM_016739	ENSMUSG00000027184	Caprin1	AL022980|Caprin-1|Gpiap|Gpiap1|Mmgpip137|P137|rng105	cell cycle associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-8766386-4	chr16	8766303	8766503	+	979.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28061.0	NM_001003918	252870.0	Mm.295330	NM_001003918	ENSMUSG00000022710	Usp7	2210010O09Rik|AA409944|AA617399|AU019296|AW548146|C80752|Hausp	ubiquitin specific peptidase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-5709527-2	chr11	5709427	5709627	+	914.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-1828.0	NM_026080	64660.0	Mm.7328	NM_026080	ENSMUSG00000020477	Mrps24	3110030K20Rik|AI414579|Rpms24	mitochondrial ribosomal protein S24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165946365-4	chr2	165946255	165946455	+	987.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-46282.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	-0.390154004026669	-0.376552089057652	-0.198142608195205	-0.384439957370737	-0.38930338323373	0.374192164487727	-0.0377534445538751	-0.383839202434824	2.77643905728199	0.261738988792844	1
Merged-chr8-61591178-4	chr8	61591066	61591266	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001293774)	promoter-TSS (NM_001293774)	3.0	NM_001293774	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	0.284172987053154	0.315706621726681	0.973513120328522	0.297606263667146	0.28619093946546	0.317972672570951	1.38857176881926	1.04717861896797	1.69983806921273	0.380763891322706	1
Merged-chr12-36308888-3	chr12	36308814	36309014	+	940.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5255.0	NM_025312	66042.0	Mm.43375	NM_025312	ENSMUSG00000036169	Sostdc1	0610006G05Rik|Sostl|USAG-1|Wise|ectodin	sclerostin domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31568814-2	chr14	31568714	31568914	+	596.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009937, intron 1 of 16)	intron (NM_009937, intron 1 of 16)	8569.0	NM_009937	382864.0	Mm.239821	NM_009937	ENSMUSG00000057606	Colq	A130034K24Rik	collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-64965648-4	chr12	64965556	64965756	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025707)	promoter-TSS (NM_025707)	-86.0	NM_177805	328108.0	Mm.138465	NM_177805	ENSMUSG00000035614	Togaram1	A430041B07Rik|BC062107|C130034K06|Fam179b|mKIAA0423	TOG array regulator of axonemal microtubules 1	protein-coding	6.82050120413389	6.99536530170681	6.98276939081575	6.95456137108732	6.91440380467043	6.39695364264229	7.27867995899718	6.92931188244832	-0.0221525314710508	0.909072713177029	0.998431161219273
Merged-chr3-95818817-4	chr3	95818657	95818857	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001081293, exon 1 of 11)	5' UTR (NM_001081293, exon 1 of 11)	196.0	NM_001081293	75137.0	Mm.196275	NM_028328	ENSMUSG00000028106	Rprd2	2810036A19Rik|4930535B03Rik|6720469I21Rik|AL022841|AL022940|AU021304|BB077382|mKIAA0460	regulation of nuclear pre-mRNA domain containing 2	protein-coding	4.18085757993931	3.40135975650197	3.15859149816615	4.82611094803108	4.12430268259655	2.86121062345581	3.18616862785965	5.04645025254857	0.0421245965944631	0.944997621290351	0.998431161219273
Merged-chr4-133814839-2	chr4	133814747	133814947	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	59884.0	NM_001285506	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-54729534-4	chr11	54729446	54729646	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178626, intron 3 of 5)	ORR1C1|LTR|ERVL-MaLR	58157.0	NM_178626	72729.0	Mm.29476	NM_178626	ENSMUSG00000052298	Cdc42se2	2810404F18Rik|AA408783|AA536669|SPEC2	CDC42 small effector 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16782627-4	chr7	16782524	16782724	+	887.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009201, intron 1 of 8)	intron (NM_009201, intron 1 of 8)	1278.0	NM_009201	20514.0	Mm.1056	NM_009201	ENSMUSG00000001918	Slc1a5	AAAT|ASCT2|ATBO|M7V1|M7VS1|R16|RDRC|Slc1a7	solute carrier family 1 (neutral amino acid transporter), member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-35173898-1	chr7	35173798	35173998	+	547.0	f1_balb.idr	Intergenic	Intergenic	-12487.0	NM_017394	53896.0	Mm.35567	NM_017394	ENSMUSG00000030495	Slc7a10	AL024237|Asc-1|D7Bwg0847e	solute carrier family 7 (cationic amino acid transporter, y+ system), member 10	protein-coding	0.838261651689604	0.731563748222673	0.338318104801171	0.331726896058791	1.31762202344964	0.739873539233007	0.340193837853867	0.332881761475659	0.939904860908529	0.610609997000254	1
Merged-chr12-85575633-4	chr12	85575531	85575731	+	841.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23474.0	NM_001205052	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-39848202-11	chr17	39848097	39848297	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_046233, exon 1 of 1)	non-coding (NR_046233, exon 1 of 1)	5200.0	NR_046233	100861531.0		NR_046233		Rn45s	-	45S pre-ribosomal RNA	rRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-20864762-4	chr5	20864653	20864853	+	984.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172992, intron 1 of 17)	intron (NM_172992, intron 1 of 17)	17371.0	NM_172992	68770.0	Mm.86410	NM_172992	ENSMUSG00000039987	Phtf2	1110054G21Rik|9530062N20Rik|AI447096|C77923	putative homeodomain transcription factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-20114160-2	chr11	20114056	20114256	+	908.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1205.0	NM_146243	66713.0	Mm.259045	NM_146243	ENSMUSG00000020152	Actr2	4921510D23Rik|AA409782|Arp2|D6Ertd746e	ARP2 actin-related protein 2	protein-coding	2.65735817530424	2.73179095312912	2.33076400264062	3.08896649503988	3.52708292522994	3.00622572350804	2.78946853578686	3.58455169795689	0.968691386344412	0.139290130600536	0.582908112665358
Merged-chr7-100508028-2	chr7	100507938	100508138	+	887.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_153527, intron 3 of 7)	intron (NM_153527, intron 3 of 7)	6777.0	NM_153527	69387.0	Mm.278554	NM_153527	ENSMUSG00000030708	Dnajb13	1700014P03Rik|Tsarg	DnaJ heat shock protein family (Hsp40) member B13	protein-coding	1.75705595161092	1.82470105321758	1.16256817229757	2.08397313808974	2.25071981724056	2.44777598560542	1.16817407273318	2.09516575846958	0.87553686368956	0.421784244766583	0.900322118218157
Merged-chr1-87656311-4	chr1	87656223	87656423	+	819.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110192, intron 2 of 26)	L1MC4|LINE|L1	36011.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-172078158-1	chr1	172078058	172078258	+	696.0	f0_balb.idr	intron (NM_021607, intron 2 of 16)	intron (NM_021607, intron 2 of 16)	-4371.0	NM_009938	12847.0	Mm.30041	NM_009938	ENSMUSG00000026553	Copa	AU040324|xenin	coatomer protein complex subunit alpha	protein-coding	-1.33757450904768	-1.30799248159781	-1.16058570722215	-1.32621433497869	-0.950624695958596	-1.30582454095144	-1.31573190992335	-1.32474336967875	1.06766334797015	0.755383997422617	1
Merged-chr6-145348350-4	chr6	145348229	145348429	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-39296.0	NR_003625	381827.0	Mm.179075	NM_001001987		1700073E17Rik	-	ribosomal protein L7 pseudogene	pseudo	4.42752246594074	4.34301788707386	4.68032959082441	3.80171213301584	4.57917604404492	5.02813085879173	4.66806876392139	4.96310737841012	0.590673605270546	0.115813680671616	0.533032893134419
Merged-chr7-46790866-4	chr7	46790757	46790957	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005247, intron 2 of 22)	intron (NM_001005247, intron 2 of 22)	5024.0	NM_001005248	246694.0	Mm.379442	NM_178742	ENSMUSG00000014418	Hps5	AI646796|AL022647|C85120|haze|hz|maroon|mr|ru-2|ru2	HPS5, biogenesis of lysosomal organelles complex 2 subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-84606766-2	chr16	84606671	84606871	+	793.166626	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73018.0	NR_040537	78023.0	Mm.243853	NR_040537		4930529L06Rik	-	RIKEN cDNA 4930529L06 gene	ncRNA	1.07664414954679	1.24642966266537	0.590957448454542	0.908185354636811	0.572957728345594	0.602653415972231	1.20447409609814	1.15731590650597	-0.258420750740595	0.871087098103698	1
Merged-chr10-61149311-2	chr10	61149211	61149411	+	915.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1627.0	NM_001316674	20397.0	Mm.412319	NM_009163	ENSMUSG00000020097	Sgpl1	AI428538|D10Xrf456|S1PL|Spl	sphingosine phosphate lyase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35908597-2	chr17	35908497	35908697	+	787.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001142745, exon 6 of 11)	exon (NM_001142745, exon 6 of 11)	1471.0	NM_001142745	73242.0	Mm.273155	NM_028476	ENSMUSG00000024426	Atat1	0610011P08Rik|2610008K08Rik|2610110G12Rik|3110080J08Rik|Mec17|TAT	alpha tubulin acetyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-38710971-4	chr15	38710860	38711060	+	952.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17556.0	NR_131206	105463124.0	Mm.432448	NR_131206	ENSMUSG00000115620	Gm45924	Borg	predicted gene, 45924	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-23577105-7	chr13	23576906	23577106	+	887.305969	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_178204)	TTS (NM_178204)	1243.0	NM_178204	319149.0	Mm.347699	NM_178204	ENSMUSG00000099583	Hist1h3d	H3-b	histone cluster 1, H3d	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-146906001-3	chr5	146905906	146906106	+	712.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42651.0	NM_025652	66596.0	Mm.196528	NM_025652	ENSMUSG00000016503	Gtf3a	2010015D03Rik|2610111I01Rik|5330403M05Rik	general transcription factor III A	protein-coding	0.556481291874363	1.40959171067886	0.61153012608967	0.997166966824562	0.933727618746361	0.424575411875224	0.415184664385862	0.4070903274581	-1.98777794035806	0.244907172924919	1
Merged-chr10-80052792-2	chr10	80052692	80052892	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008162)	promoter-TSS (NM_008162)	-696.0	NM_008162	625249.0	Mm.332810	NM_008162	ENSMUSG00000075706	Gpx4	GPx-4|GSHPx-4|PHGPx|mtPHGPx|snGPx	glutathione peroxidase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-102408024-4	chr11	102407928	102408128	+	974.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026542)	promoter-TSS (NM_026542)	-511.0	NM_026542	68066.0	Mm.44226	NM_026542	ENSMUSG00000018677	Slc25a39	3010027G13Rik|D11Ertd333e	solute carrier family 25, member 39	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166564081-3	chr2	166563976	166564176	+	850.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_152154)	promoter-TSS (NR_152154)	-446.0	NR_152154	433503.0	Mm.491336	NR_152154		Gm29679	-	predicted gene, 29679	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-87919516-4	chr3	87919397	87919597	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026591)	promoter-TSS (NM_026591)	-47.0	NM_026591	67707.0	Mm.393802	NM_026591	ENSMUSG00000019710	Mrpl24	2010005E08Rik|2810470K06Rik|6720473G22Rik|AA407670	mitochondrial ribosomal protein L24	protein-coding	2.73532291956516	2.82648980519098	3.98777051576176	2.48819858177834	3.22464887379566	3.44215131407834	4.4533744015256	2.78958306950438	0.733603931182858	0.273642215013542	0.777508516513849
Merged-chr1-92976638-8	chr1	92976494	92976694	+	917.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271766, intron 1 of 1)	intron (NM_001271766, intron 1 of 1)	1247.0	NM_001271766	64095.0	Mm.152780	NM_022320	ENSMUSG00000026271	Gpr35	KPG_007	G protein-coupled receptor 35	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126573333-4	chr8	126573210	126573410	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	20126.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	0.523534517135386	1.648261978413	1.66126073958757	1.07339191537847	0.526273981117355	0.813716285343688	0.555382011088811	0.756087245550735	-3.235965981218	0.0495897962530555	0.324651714502088
Merged-chr5-134572322-2	chr5	134572222	134572422	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_106087)	TTS (NR_106087)	246.0	NR_106087	102465708.0		NR_106087	ENSMUSG00000106323	Mir7228	mmu-mir-7228	microRNA 7228	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-164924606-4	chr2	164924435	164924635	+	883.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12785.0	NM_199027	329559.0	Mm.330776	NM_199027	ENSMUSG00000039834	Zfp335	1810045J01Rik|NIF-1|Nif1|Znf335	zinc finger protein 335	protein-coding	-1.5061220274826	-1.47360709383584	-1.48343987814663	-1.49151681994238	-1.50383953926072	-1.47147628845725	-1.0170701920923	-1.49007105122263	2.15652851593596	0.535359572134045	1
Merged-chr3-53041298-4	chr3	53041176	53041376	+	812.80835	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175386)	promoter-TSS (NM_175386)	-271.0	NM_175386	108927.0	Mm.118617	NM_175386	ENSMUSG00000048332	Lhfp	2810489O06Rik|AI194968|Lhfpl6	lipoma HMGIC fusion partner	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-124909956-4	chr2	124909857	124910057	+	938.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-158170.0	NM_175034	317750.0	Mm.330538	NM_175034	ENSMUSG00000035183	Slc24a5	F630045L20Rik|JSX|NCKX5|NCX5|Oca6	solute carrier family 24, member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-108854603-4	chr9	108854518	108854718	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_134420, exon 1 of 18)	5' UTR (NM_134420, exon 1 of 18)	575.0	NM_134420	171429.0	Mm.45201	NM_134420	ENSMUSG00000023259	Slc26a6	B930010B04Rik|CFEX|Pat-1|Pat1	solute carrier family 26, member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117598879-2	chr11	117598779	117598979	+	841.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12368.0	NR_015489	78403.0	Mm.212543	NR_015489		2900041M22Rik	-	RIKEN cDNA 2900041M22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127375703-2	chr7	127375603	127375803	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_175560, exon 1 of 3)	exon (NM_175560, exon 1 of 3)	347.0	NM_175560	269997.0	Mm.221270	NM_175560	ENSMUSG00000054381	Zfp747	6430604K15Rik	zinc finger protein 747	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-34196607-4	chr7	34196502	34196702	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360710)	promoter-TSS (NM_001360710)	68.0	NM_026549	68079.0	Mm.38173	NM_026549	ENSMUSG00000002635	Pdcd2l	6030457N17Rik	programmed cell death 2-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-67184199-4	chr14	67184092	67184292	+	918.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49100.0	NM_010095	13592.0	Mm.319947	NM_010095	ENSMUSG00000022053	Ebf2	D14Ggc1e|EBF-2|Mmot1|O/E-3|OE-3	early B cell factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-39876020-4	chr18	39875943	39876143	+	895.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	102546.0	NM_011033	18459.0	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	4.73101903661169	3.10774756321705	4.50555401207245	4.78744081259969	4.34376384909517	3.92283542351461	4.21744714728812	4.03148322758387	-0.386335334910911	0.402836245347806	0.888448714577656
Merged-chr7-128740526-4	chr7	128740428	128740628	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145955)	promoter-TSS (NM_145955)	-99.0	NM_145955	210711.0	Mm.58882	NM_145955	ENSMUSG00000048170	Mcmbp	1110007A13Rik|AU017382|BC025641|MCM-BP	minichromosome maintenance complex binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-3665248-2	chr8	3665148	3665348	+	925.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026985)	promoter-TSS (NM_026985)	-514.0	NM_026985	69189.0	Mm.175176	NM_026985	ENSMUSG00000013974	Mcemp1	1810033B17Rik	mast cell expressed membrane protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-81767553-1	chr8	81767453	81767653	+	918.0	f0_c57.idr	intron (NM_001297593, intron 4 of 23)	intron (NM_001297593, intron 4 of 23)	424991.0	NM_001297593	234515.0	Mm.324468	NM_001024617	ENSMUSG00000037940	Inpp4b	E130107I17Rik	inositol polyphosphate-4-phosphatase, type II	protein-coding	2.96681123537381	1.31795537688039	3.28389386845462	1.238142451194	2.36170609101524	2.41583009780399	3.18260637884814	1.52189982428028	-0.0521211764320946	0.959581926090882	0.998431161219273
Merged-chr14-75227634-2	chr14	75227534	75227734	+	711.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008879, intron 16 of 16)	intron (NM_008879, intron 16 of 16)	-14653.0	NM_019775	56373.0	Mm.24242	NM_019775	ENSMUSG00000021999	Cpb2	1110032P04Rik|4930405E17Rik|AI255929|CPR|Cpu|TAFI	carboxypeptidase B2 (plasma)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-23271353-2	chr16	23271253	23271453	+	881.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252505, intron 2 of 7)	intron (NM_001252505, intron 2 of 7)	-19117.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-50285083-1	chr17	50284983	50285183	+	559.0	f0_balb.idr	intron (NM_010021, intron 7 of 10)	intron (NM_010021, intron 7 of 10)	8537.0	NM_010021	13164.0	Mm.280641	NM_010021	ENSMUSG00000010592	Dazl	Daz-like|Dazh|Dazl1|Dazla|Tpx-2|Tpx2	deleted in azoospermia-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-80172901-4	chr17	80172800	80173000	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176963, intron 4 of 6)	intron (NM_176963, intron 4 of 6)	34405.0	NM_001195486	225027.0	Mm.292016	NM_146083	ENSMUSG00000024097	Srsf7	35kDa|9430065L19Rik|9G8|NX-96|Sfrs7	serine/arginine-rich splicing factor 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-17909596-3	chr17	17909498	17909698	+	946.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21774.0	NM_008039	14289.0	Mm.378918	NM_008039	ENSMUSG00000052270	Fpr2	E330010I07Rik|Fpr-rs2	formyl peptide receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-87017117-3	chr6	87016994	87017194	+	868.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020045, intron 3 of 7)	B3A|SINE|B2	7258.0	NM_020045	56748.0	Mm.23809	NM_020045	ENSMUSG00000029993	Nfu1	0610006G17Rik|CGI-33|Hirip5	NFU1 iron-sulfur cluster scaffold	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-110652793-2	chr9	110652693	110652893	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183276, intron 1 of 53)	intron (NM_183276, intron 1 of 53)	1368.0	NM_183276	235627.0	Mm.335481	NM_183276	ENSMUSG00000056724	Nbeal2	1110014F23Rik|BC042396|mKIAA0540	neurobeachin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-92978494-1	chr7	92978394	92978594	+	543.0	f1_balb.idr	Intergenic	Intergenic	-101385.0	NM_021427	58238.0	Mm.113787	NM_021427	ENSMUSG00000051515	Fam181b	A830059I20Rik|AB041569	family with sequence similarity 181, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-55252276-4	chr9	55252125	55252325	+	754.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_032002, intron 3 of 7)	B2_Mm2|SINE|B2	31400.0	NM_032002	83961.0	Mm.443874	NM_032002	ENSMUSG00000032311	Nrg4	AI552600	neuregulin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-106535590-2	chr8	106535490	106535690	+	756.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037809, intron 3 of 15)	intron (NM_001037809, intron 3 of 15)	24738.0	NM_001037809	12560.0	Mm.4658	NM_007665	ENSMUSG00000061048	Cdh3	AI385538|Cadp|Cdhp|P-cadherin|Pcad	cadherin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-73187948-2	chr15	73187848	73188048	+	621.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3001.0	NM_153178	239528.0	Mm.23095	NM_153178	ENSMUSG00000036698	Ago2	1110029L17Rik|2310051F07Rik|AI225898|AL022874|AW546247|Eif2c2|Gerp95|Gm10365|mKIAA4215	argonaute RISC catalytic subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-157036509-3	chr2	157036435	157036635	+	829.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164663, intron 6 of 14)	MIR3|SINE|MIR	-29460.0	NM_025853	66934.0	Mm.25410	NM_025853	ENSMUSG00000027635	Dsn1	1700022L09Rik|AW552447	DSN1 homolog, MIS12 kinetochore complex component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-118087056-2	chr10	118086956	118087156	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-54731.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	0.84844491333126	0.494339011959565	0.48665264178079	0.480712959373323	1.12750011945669	0.856449888962457	0.952220398093126	0.913737498500843	2.38396305244916	0.161380847656547	1
Merged-chr12-55485953-4	chr12	55485843	55486043	+	944.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	6704.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-134225491-2	chr5	134225391	134225591	+	736.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010876, intron 6 of 10)	intron (NM_010876, intron 6 of 10)	4134.0	NM_001286037	17969.0	Mm.425296	NM_010876	ENSMUSG00000015950	Ncf1	NCF-47K|NOXO2|Ncf-1|p47-phox|p47<phox>|p47phox	neutrophil cytosolic factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4627325-2	chr16	4627225	4627425	+	736.400024	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_030205, exon 28 of 28)	3' UTR (NM_030205, exon 28 of 28)	-2379.0	NM_025571	66449.0	Mm.354760	NM_025571	ENSMUSG00000014301	Pam16	2010110I09Rik|AV006767|CGI-136|Magmas|Tim16|Timm16	presequence translocase-asssociated motor 16 homolog (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-66356384-4	chr7	66356296	66356496	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146191, intron 2 of 33)	B1F1|SINE|Alu	25328.0	NR_106024	102465640.0		NR_106024	ENSMUSG00000098353	Mir7057	Gm27550|mmu-mir-7057	microRNA 7057	ncRNA	3.25756289547847	2.90600347356756	3.00768884762093	2.83156265723894	2.61240706445355	3.13265280666099	2.83084324901342	1.82182539669661	-0.621134624528694	0.383072291972412	0.873930254585267
Merged-chr6-136718962-4	chr6	136718848	136719048	+	983.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145067, intron 18 of 25)	MER44B|DNA|TcMar-Tigger	-57055.0	NM_025806	66857.0	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	3.75554912621811	5.34089922051582	4.07675451236578	4.74494731580421	4.18348769230589	4.49674655763207	3.01749803717063	4.72928814474183	-0.470115432676688	0.347158646754713	0.847437850938575
Merged-chr7-49616402-2	chr7	49616302	49616502	+	737.875	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20433.0	NM_001005232	13172.0	Mm.307176	NM_001005232	ENSMUSG00000030507	Dbx1	AI426026|Dbx	developing brain homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-103210490-2	chr3	103210390	103210590	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	38835.0	NM_001356331	68183.0	Mm.104919	NM_026602	ENSMUSG00000005687	Bcas2	6430539P16Rik|AI132645|C76366|C80030	breast carcinoma amplified sequence 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-66395550-2	chr7	66395450	66395650	+	777.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_053080, intron 12 of 12)	intron (NM_053080, intron 12 of 12)	-7209.0	NM_146191	233328.0	Mm.33284	NM_146191	ENSMUSG00000015133	Lrrk1	AW319595|C230002E15Rik|D130026O16Rik|mKIAA1790	leucine-rich repeat kinase 1	protein-coding	-1.26443160715111	-1.51269227652887	-1.52213727607237	-1.52989567991432	-1.54173241655551	-1.51064550572703	-1.37138617352608	-1.528506929336	-0.563662181339258	0.873093626595385	1
Merged-chr7-75576393-4	chr7	75576291	75576491	+	991.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 3 of 36)	intron (NM_029332, intron 3 of 36)	120857.0	NM_029332	75547.0	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-74999890-2	chr15	74999787	74999987	+	618.5	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1856.0	NM_010738	110454.0	Mm.425949	NM_010738	ENSMUSG00000075602	Ly6a	Ly-6A.2|Ly-6A/E|Ly-6E.1|Sca-1|Sca1|TAP	lymphocyte antigen 6 complex, locus A	protein-coding	3.01823158150108	2.71103182018177	3.92749315774069	3.31831026358419	2.14798958793271	1.80005546968601	1.73536882300954	2.41682302685151	-2.43595362386272	0.00155141925482721	0.0278096537142682
Merged-chr11-106778793-3	chr11	106778652	106778852	+	989.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_148430, exon 1 of 8)	non-coding (NR_148430, exon 1 of 8)	714.0	NM_001353435	50776.0	Mm.859	NM_015810	ENSMUSG00000020718	Polg2	mtPolB|p55|polG-beta	polymerase (DNA directed), gamma 2, accessory subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10049765-1	chr19	10049665	10049865	+	598.0	f1_c57bl6.idr	intron (NM_021890, intron 1 of 11)	intron (NM_021890, intron 1 of 11)	8217.0	NM_021890	60527.0	Mm.253875	NM_021890	ENSMUSG00000024664	Fads3	AI464531	fatty acid desaturase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-61135870-1	chr10	61135770	61135970	+	545.0	f1_balb.idr	intron (NM_009163, intron 2 of 14)	intron (NM_009163, intron 2 of 14)	11814.0	NM_009163	20397.0	Mm.412319	NM_009163	ENSMUSG00000020097	Sgpl1	AI428538|D10Xrf456|S1PL|Spl	sphingosine phosphate lyase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-180580506-1	chr2	180580406	180580606	+	714.400024	f0_balb.idr	promoter-TSS (NM_028479)	promoter-TSS (NM_028479)	-716.0	NM_028479	73247.0	Mm.426558	NM_028479	ENSMUSG00000027569	Mrgbp	1600027N09Rik|AW060503|C80444	MRG/MORF4L binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-97437933-2	chr16	97437833	97438033	+	563.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_019517, exon 9 of 9)	3' UTR (NM_019517, exon 9 of 9)	24972.0	NM_010846	17857.0	Mm.33996	NM_010846	ENSMUSG00000000386	Mx1	AI893580|Mx|Mx-1	MX dynamin-like GTPase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132337932-2	chr4	132337832	132338032	+	836.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133878, intron 3 of 9)	intron (NM_133878, intron 3 of 9)	7818.0	NM_001197082	100088.0	Mm.255045	NM_133878	ENSMUSG00000028896	Rcc1	4931417M11Rik|AI326872|Chc1	regulator of chromosome condensation 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-138848272-4	chr5	138848152	138848352	+	850.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28172.0	NM_001195128	384244.0	Mm.485002	NM_001195128	ENSMUSG00000094504	Gm5294	EG384244	predicted gene 5294	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-90810041-2	chr16	90809941	90810141	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029497, intron 1 of 38)	intron (NM_029497, intron 1 of 38)	372.0	NM_029497	207932.0	Mm.328688	NM_029497	ENSMUSG00000039929	Urb1	4921511H13Rik|5730405K23Rik|AA670781|AI645590|mKIAA0539	URB1 ribosome biogenesis 1 homolog (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-70385296-3	chr9	70385197	70385397	+	854.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181072, intron 26 of 27)	intron (NM_181072, intron 26 of 27)	20456.0	NR_049200	100885839.0		NR_049200	ENSMUSG00000093763	Mir5626	Gm25590|mir-5626|mmu-mir-5626	microRNA 5626	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70530191-2	chr8	70530086	70530286	+	871.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111066, intron 2 of 8)	intron (NM_001111066, intron 2 of 8)	2340.0	NM_001199631	14232.0	Mm.141864	NM_010223	ENSMUSG00000019428	Fkbp8	38kDa|FKBP-38|FKBP-8|FKBPR38|Fkbp38|mFKBP38	FK506 binding protein 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-13526416-1	chr2	13526316	13526516	+	559.0	f0_balb.idr	intron (NM_010067, intron 2 of 10)	intron (NM_010067, intron 2 of 10)	18248.0	NM_010067	13434.0	Mm.6979	NM_010067	ENSMUSG00000026723	Trdmt1	Dnmt2|Rnmt2	tRNA aspartic acid methyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32969586-4	chr2	32969488	32969688	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME1|LINE|L1	6287.0	NR_002898	104367.0	Mm.250030	NR_002898	ENSMUSG00000065124	Snora65	MBII-351|Rnu65	small nucleolar RNA, H/ACA box 65	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34096660-1	chr17	34096560	34096760	+	825.0	f1_balb.idr	Intergenic	Intergenic	-1351.0	NR_046183	414076.0	Mm.473092	NR_046183	ENSMUSG00000098197	BC051537	-	cDNA sequence BC051537	ncRNA	-0.291782866857225	-0.631882839800181	-0.634880164825976	-0.484132996311272	-0.191152556393765	-0.631204753495639	-0.634220610436056	-0.63677940828184	-0.0183167330814654	0.994662394866585	1
Merged-chr11-115359672-2	chr11	115359572	115359772	+	829.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175454, intron 4 of 18)	intron (NM_175454, intron 4 of 18)	8047.0	NM_175454	217310.0	Mm.205707	NM_175454	ENSMUSG00000034586	Hid1	C630004H02Rik	HID1 domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-23620248-3	chr13	23620171	23620371	+	774.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177653, intron 1 of 1)	intron (NM_001177653, intron 1 of 1)	823.0	NM_001177653	319179.0	Mm.440391	NM_178194	ENSMUSG00000047246	Hist1h2be	-	histone cluster 1, H2be	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128805489-4	chr10	128805370	128805570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359824)	promoter-TSS (NM_001359824)	-84.0	NM_001359825	74330.0	Mm.296915	NM_028873	ENSMUSG00000025354	Dnajc14	5730551F12Rik|DNAJ|DRIP78|HDJ3|LIP6	DnaJ heat shock protein family (Hsp40) member C14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-100100868-4	chr6	100100757	100100957	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	AT_rich|Low_complexity|Low_complexity	186501.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69041793-4	chr11	69041693	69041893	+	996.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3844.0	NM_011496	20877.0	Mm.3488	NM_011496	ENSMUSG00000020897	Aurkb	AIM-1|AIRK2|AL022959|Aik2|Aim1|Ark2|AurB|IPL1|STK-1|Stk12|Stk5	aurora kinase B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-88280808-2	chr7	88280708	88280908	+	971.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_009982, intron 1 of 6)	intron (NM_009982, intron 1 of 6)	2723.0	NM_001311790	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-64603347-4	chr17	64603252	64603452	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008549, intron 1 of 21)	intron (NM_008549, intron 1 of 21)	1703.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-113678728-2	chr11	113678628	113678828	+	644.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_138598, intron 1 of 2)	intron (NM_138598, intron 1 of 2)	5423.0	NM_138598	28081.0	Mm.351688	NM_138598	ENSMUSG00000041629	Fam104a	D11Wsu99e	family with sequence similarity 104, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-29403450-2	chr17	29403349	29403549	+	625.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42535.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	-2.18292257394068	-2.15545247547656	-2.03304972317742	-2.17058342868585	-2.18099422382073	-2.1536522739386	-2.16187909550322	-2.16936197735154	-0.683654500252594	0.846597994014493	1
Merged-chr1-153898617-2	chr1	153898517	153898717	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1309.0	NR_106194	102466257.0		NR_106194	ENSMUSG00000099227	Mir8114	Gm27382|mmu-mir-8114	microRNA 8114	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-4090528-2	chr6	4090428	4090628	+	677.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR34B_MM|LTR|ERVK	-3598.0	NM_009748	12068.0	Mm.286457	NM_009748	ENSMUSG00000032757	Bet1	AW555236|Bet-1	Bet1 golgi vesicular membrane trafficking protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-9120132-6	chr15	9119977	9120177	+	862.555542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013787, intron 7 of 9)	intron (NM_013787, intron 7 of 9)	20377.0	NM_013787	27401.0	Mm.35584	NM_013787	ENSMUSG00000054115	Skp2	4930500A04Rik|FBXL1|FWD1|p45	S-phase kinase-associated protein 2 (p45)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180889977-4	chr1	180889864	180890064	+	966.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3144.0	NM_177099	320202.0	Mm.87078	NM_177099	ENSMUSG00000066652	Lefty2	6030463A22Rik|Ebaf|Lefta|Leftb|lefty-2|lefty-B	left-right determination factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-32077223-4	chr14	32077168	32077368	+	919.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8018.0	NR_104305	105638.0	Mm.2519	NM_172254	ENSMUSG00000021905	Dph3	DELGIP1|DelgipP1|Desr1|KTI11|Zcsl2	diphthamine biosynthesis 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120484622-4	chr11	120484534	120484734	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027204)	promoter-TSS (NM_027204)	-3.0	NM_027204	56282.0	Mm.133851	NM_027204	ENSMUSG00000039640	Mrpl12	0610034O11Rik|1500031N16Rik|L12mt|MRP-L12|Rpml12	mitochondrial ribosomal protein L12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-23698465-4	chr13	23698345	23698545	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178208)	promoter-TSS (NM_178208)	13.0	NM_178208	319155.0	Mm.261662	NM_178208	ENSMUSG00000060678	Hist1h4c	-	histone cluster 1, H4c	protein-coding	6.94635334256847	7.09590005539352	7.07221604104161	6.39508223467458	6.59743655615425	6.87387376814773	6.98441771618405	6.66443438152464	-0.123555683406971	0.535427726052441	0.95286627222167
Merged-chr11-52099902-4	chr11	52099754	52099954	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019411, intron 1 of 6)	intron (NM_019411, intron 1 of 6)	1030.0	NM_019411	19052.0	Mm.260288	NM_019411	ENSMUSG00000020349	Ppp2ca	PP2A|R75353	protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-6385109-2	chr15	6385009	6385209	+	575.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001008702, intron 1 of 13)	intron (NM_001008702, intron 1 of 13)	-1639.0	NM_023118	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-182983163-4	chr1	182983089	182983289	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28401.0	NM_016928	53791.0	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding	4.27880455170071	5.18158825942998	4.84067749153633	4.44887294472041	4.40447246183477	5.2144173875388	4.70003854186068	4.69855704879315	0.0677731119159901	0.856135423959266	0.998431161219273
Merged-chr1-43917072-4	chr1	43916983	43917183	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16911.0	NM_001310540	22019.0	Mm.401675	NM_009418	ENSMUSG00000041763	Tpp2	TPP-2|TppII	tripeptidyl peptidase II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-63752779-2	chr4	63752679	63752879	+	625.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7666.0	NM_177371	326623.0	Mm.208152	NM_177371	ENSMUSG00000050395	Tnfsf15	Tl1|Tl1a|Tnlg1b|Vegi	tumor necrosis factor (ligand) superfamily, member 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-87416536-4	chr14	87416432	87416632	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172605)	promoter-TSS (NM_172605)	-51.0	NM_172605	219249.0	Mm.35168	NM_172605	ENSMUSG00000022019	Tdrd3	4732418C03Rik|6720468N18	tudor domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-131564026-2	chr3	131563926	131564126	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011863)	promoter-TSS (NM_011863)	-742.0	NM_001289479	23971.0	Mm.244912	NM_011863	ENSMUSG00000028032	Papss1	AI325286|Asapk|SK1	3'-phosphoadenosine 5'-phosphosulfate synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-70645026-4	chr18	70644894	70645094	+	970.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	76702.0	NM_010773	17191.0	Mm.322	NM_010773	ENSMUSG00000024513	Mbd2	MBD2a	methyl-CpG binding domain protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-32111335-3	chr17	32111236	32111436	+	954.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19913.0	NR_027316	435518.0	Mm.328944	NR_027316	ENSMUSG00000002791	Pdxk-ps	Gm9743	pyridoxal (pyridoxine, vitamin B6) kinase, pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-49045841-3	chr16	49045735	49045935	+	771.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-11651.0	NM_001166210	667772.0	Mm.301387	NM_001166210	ENSMUSG00000092009	Myh15	EG667772	myosin, heavy chain 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-79168143-3	chr8	79168035	79168235	+	980.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001294279, intron 8 of 14)	intron (NM_001294279, intron 8 of 14)	80448.0	NM_026315	67687.0	Mm.178707	NM_026315	ENSMUSG00000031682	1700011L22Rik	-	RIKEN cDNA 1700011L22 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-39199316-3	chr15	39199209	39199409	+	761.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001256383, intron 1 of 25)	intron (NM_001256383, intron 1 of 25)	1023.0	NM_053271	116838.0	Mm.309296	NM_053271	ENSMUSG00000037386	Rims2	2810036I15Rik|AW048769|RIM2|Rab3ip2|Rim2(+40A)|Rim2(+44A)|Rim2(+4A)|Serg2|Syt3-rs|mKIAA0751	regulating synaptic membrane exocytosis 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80109580-3	chr7	80109469	80109669	+	898.694458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173011, intron 1 of 10)	intron (NM_173011, intron 1 of 10)	5781.0	NM_173011	269951.0	Mm.246432	NM_173011	ENSMUSG00000030541	Idh2	E430004F23|IDPm|Idh-2	isocitrate dehydrogenase 2 (NADP+), mitochondrial	protein-coding	1.85705375252686	2.61901397667232	1.36602554680827	1.95531226188595	2.67955308919182	2.92318434777469	2.43993857524469	2.36378090105853	1.33656126228656	0.128966366928705	0.561987337921528
Merged-chr5-144223675-4	chr5	144223569	144223769	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356992)	promoter-TSS (NM_001356992)	-54.0	NM_001356993	70381.0	Mm.239412	NM_027410	ENSMUSG00000066621	Tecpr1	2210010N04Rik|mKIAA1358	tectonin beta-propeller repeat containing 1	protein-coding	2.04076698082098	2.40397622023898	1.57257350936936	2.14789607799527	2.57030689975972	1.62640546017293	2.09714948840618	2.54742537658293	0.489992373954152	0.593228758522908	0.9706660979479
Merged-chr1-118388898-4	chr1	118388794	118388994	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359346)	promoter-TSS (NM_001359346)	-164.0	NM_001359329	76707.0	Mm.138740	NM_029709	ENSMUSG00000064302	Clasp1	1700030C23Rik|5730583A19Rik|B130045P17Rik|CLASP1alpha	CLIP associating protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-32773964-4	chr12	32773867	32774067	+	967.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46368.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-45238283-4	chr9	45238176	45238376	+	978.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198971, intron 1 of 4)	intron (NM_001198971, intron 1 of 4)	28431.0	NR_106054	102466803.0		NR_106054	ENSMUSG00000098361	Mir7086	Gm27643|mmu-mir-7086	microRNA 7086	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-59668592-2	chr13	59668492	59668692	+	711.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001035122, intron 1 of 9)	intron (NM_001035122, intron 1 of 9)	7192.0	NM_001035122	105348.0	Mm.171335	NM_027307	ENSMUSG00000021556	Golm1	2310001L02Rik|AW125446|D030064E01Rik|GP73|Golph2|PSEC0257	golgi membrane protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153071323-2	chr2	153071227	153071427	+	675.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145536, intron 4 of 8)	intron (NM_145536, intron 4 of 8)	5372.0	NM_145536	228788.0	Mm.299979	NM_145536	ENSMUSG00000027474	Ccm2l	-	cerebral cavernous malformation 2-like	protein-coding	0.995722270817822	1.3484041995877	0.815299984094943	0.934296415930675	0.894481404111782	0.656759588870544	1.30777006770439	0.642749841489738	-0.667148522719514	0.656607909605651	0.988505467120973
Merged-chr1-138239772-4	chr1	138239675	138239875	+	656.645813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33963.0	NM_177397	338375.0	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-121590381-4	chr8	121590288	121590488	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026160)	promoter-TSS (NM_026160)	-80.0	NM_026160	67443.0	Mm.28357	NM_026160	ENSMUSG00000031812	Map1lc3b	1010001C15Rik|Atg8|LC3b|Map1lc3	microtubule-associated protein 1 light chain 3 beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-108165813-2	chr6	108165674	108165874	+	792.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145937, intron 3 of 8)	Lx5|LINE|L1	19809.0	NM_145937	58911.0	Mm.439876	NM_145937	ENSMUSG00000030101	Sumf1	AA543204|AI463102|AI851573|FGE	sulfatase modifying factor 1	protein-coding	0.336261484449049	1.68758738807051	0.600745911412651	0.354213295665331	1.50913930603358	0.380968108730576	0.607686743658974	0.356064579687569	-0.296216214179367	0.866108271063929	0.998431161219273
Merged-chr13-92899722-3	chr13	92899570	92899770	+	980.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54883.0	NM_001162945	382793.0	Mm.296770	NM_001162945	ENSMUSG00000021704	Mtx3	4930470O13Rik|AA409304|AI853833|AU067765|EG624619|Gm1194|Gm6514	metaxin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-112674540-5	chr12	112674512	112674712	+	921.93335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001165894)	promoter-TSS (NM_001165894)	272.0	NM_001331107	11651.0	Mm.6645	NM_009652	ENSMUSG00000001729	Akt1	Akt|LTR-akt|PKB|PKB/Akt|PKBalpha|Rac	thymoma viral proto-oncogene 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-184728909-4	chr1	184728791	184728991	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008250, intron 3 of 3)	intron (NM_008250, intron 3 of 3)	3602.0	NM_008250	15284.0	Mm.1347	NM_008250	ENSMUSG00000039377	Hlx	Hlx1	H2.0-like homeobox	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-178303569-4	chr1	178303478	178303678	+	996.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15575.0	NM_025511	66359.0	Mm.489720	NM_025511	ENSMUSG00000026500	Cox20	2310005N03Rik|Fam36a	COX20 Cox2 chaperone	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-36380408-4	chr12	36380289	36380489	+	986.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1061.0	NM_001289504	75847.0	Mm.261764	NM_178629	ENSMUSG00000043153	Ispd	4930579E17Rik|AV040780	isoprenoid synthase domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-13680783-2	chr17	13680683	13680883	+	623.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-79758.0	NR_151731	17356.0	Mm.59167	NM_010806	ENSMUSG00000068036	Afdn	5033403D15Rik|AF6|Af-6|Afadin|Gm314|I-afadin|Mllt4|S-afadin	afadin, adherens junction formation factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-132243762-2	chr7	132243662	132243862	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029935, intron 6 of 7)	intron (NM_029935, intron 6 of 7)	-71902.0	NR_028578	100043682.0	Mm.482794	NR_028578	ENSMUSG00000109270	Gm10584	-	predicted gene 10584	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78239657-4	chr15	78239512	78239712	+	877.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5199.0	NM_008677	17972.0	Mm.2068	NM_008677	ENSMUSG00000071715	Ncf4	AI451400|p40phox	neutrophil cytosolic factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-56042496-4	chr7	56042390	56042590	+	881.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7665.0	NM_010418	15204.0	Mm.20929	NM_010418	ENSMUSG00000030451	Herc2	D15F32S1h|D7H15F32S1|D7H15F37S1|jdf2|mKIAA0393|rjs	HECT and RLD domain containing E3 ubiquitin protein ligase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-8686861-4	chr6	8686715	8686915	+	907.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252266, intron 5 of 11)	intron (NM_001252266, intron 5 of 11)	71643.0	NM_001252266	15893.0	Mm.275683	NM_010492	ENSMUSG00000062995	Ica1	69kDa|ICA69	islet cell autoantigen 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-135715832-4	chr7	135715728	135715928	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081117, intron 1 of 13)	intron (NM_001081117, intron 1 of 13)	551.0	NM_001081117	17345.0	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-22346539-2	chr4	22346439	22346639	+	717.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-11004.0	NR_104379	269514.0	Mm.40708	NM_172988	ENSMUSG00000040410	Fbxl4	AI836810|FBL4|FBL5	F-box and leucine-rich repeat protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-67237914-2	chr7	67237814	67238014	+	662.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357324, intron 10 of 11)	intron (NM_001357324, intron 10 of 11)	15298.0	NM_001191051	75099.0	Mm.121691	NM_175215	ENSMUSG00000043831	Lysmd4	4930506D23Rik	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-64941675-4	chr8	64941602	64941802	+	874.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5483.0	NM_001163747	73067.0	Mm.294445	NM_028427	ENSMUSG00000025521	Tmem192	3110005G23Rik	transmembrane protein 192	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-25070215-4	chr8	25070156	25070356	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031257, intron 3 of 11)	C-rich|Low_complexity|Low_complexity	-31294.0	NM_001081187	330723.0	Mm.334452	NM_001081187	ENSMUSG00000037406	Htra4	B430206E18Rik	HtrA serine peptidase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81173284-4	chr10	81173179	81173379	+	998.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3352.0	NM_007907	13629.0	Mm.2903	NM_007907	ENSMUSG00000034994	Eef2	Ef-2	eukaryotic translation elongation factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-91139233-2	chr10	91139133	91139333	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15270.0	NM_133668	18674.0	Mm.298	NM_133668	ENSMUSG00000061904	Slc25a3	5730556H19Rik|PTP|Phc	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-29101315-4	chr19	29101218	29101418	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021525)	promoter-TSS (NM_021525)	-57.0	NM_021525	59028.0	Mm.28630	NM_021525	ENSMUSG00000024785	Rcl1	2310040A02Rik|AI789745|C76567|RPCL1|Rnac	RNA terminal phosphate cyclase-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-47413540-2	chr4	47413440	47413640	+	729.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009370, exon 9 of 9)	3' UTR (NM_009370, exon 9 of 9)	27324.0	NM_001312869	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36001594-2	chr1	36001494	36001694	+	691.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66806.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-111299465-4	chr8	111299347	111299547	+	954.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146218, intron 1 of 12)	intron (NM_146218, intron 1 of 12)	775.0	NM_146218	234736.0	Mm.334816	NM_146218	ENSMUSG00000033596	Rfwd3	BC027246	ring finger and WD repeat domain 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-138893708-1	chr3	138893608	138893808	+	754.0	f0_balb.idr	intron (NR_121195, intron 3 of 7)	intron (NR_121195, intron 3 of 7)	151500.0	NM_019571	56224.0	Mm.31927	NM_019571	ENSMUSG00000028152	Tspan5	2810455A09Rik|4930505M03Rik|NET-4|Tm4sf9	tetraspanin 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-80037372-4	chr15	80037250	80037450	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME4a|LINE|L1	-22542.0	NM_011057	18591.0	Mm.144089	NM_011057	ENSMUSG00000000489	Pdgfb	PDGF-B|Sis	platelet derived growth factor, B polypeptide	protein-coding	3.26469521427725	3.91501020596026	2.72052769629981	3.60842197869958	3.98462123927251	3.60777903334864	4.01634414923011	4.61864812885587	0.959585547839682	0.065987794226712	0.384983479748088
Merged-chr17-23998117-2	chr17	23998017	23998217	+	745.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133731)	promoter-TSS (NM_133731)	-17.0	NM_133731	70835.0	Mm.157351	NM_133731	ENSMUSG00000045027	Prss22	4733401N09Rik|BSSP-4|SP001LA	protease, serine 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-28882504-3	chr6	28882420	28882620	+	871.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019776, intron 18 of 23)	intron (NM_019776, intron 18 of 23)	-50773.0	NM_138682	192198.0	Mm.443660	NM_138682	ENSMUSG00000049939	Lrrc4	MBAG1|NGL-2|NGL2|NLG-2|Nag14	leucine rich repeat containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-161552234-4	chr1	161552119	161552319	+	739.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57562.0	NM_183391	240873.0	Mm.276823	NM_183391	ENSMUSG00000066755	Tnfsf18	Gitrl|Tnlg2a	tumor necrosis factor (ligand) superfamily, member 18	protein-coding	0.628764971310168	0.0788493924269304	0.648183849956762	0.0683479881308015	0.0618680904181082	0.0801834221715095	0.659451564820864	0.0691481192172353	-0.93843711415116	0.669444902654473	1
Merged-chr9-45116863-2	chr9	45116765	45116965	+	596.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_033547, intron 1 of 2)	intron (NR_033547, intron 1 of 2)	-1011.0	NM_001014761	72821.0	Mm.229373	NM_001014761	ENSMUSG00000070304	Scn2b	2810451E09Rik|AI840361|Gm183	sodium channel, voltage-gated, type II, beta	protein-coding	1.89984437475212	1.37155454556641	1.09559643994481	2.10664824047043	1.04998884499904	2.16497629244066	2.08788361059494	2.11824723369217	0.672891103956649	0.563132998428298	0.960362415684079
Merged-chr9-114812152-4	chr9	114812049	114812249	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027294, intron 1 of 3)	RSINE1|SINE|B4	-30156.0	NM_001252479	102545.0	Mm.35600	NM_133978	ENSMUSG00000032436	Cmtm7	AI481279|Cklfsf7|LNV	CKLF-like MARVEL transmembrane domain containing 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-34474867-4	chr19	34474871	34475071	+	779.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009890, exon 1 of 1)	exon (NM_009890, exon 1 of 1)	164.0	NM_009890	12642.0	Mm.30824	NM_009890	ENSMUSG00000050370	Ch25h	AI462618|m25OH	cholesterol 25-hydroxylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140722377-3	chr5	140722278	140722478	+	957.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1749.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-6626023-4	chr11	6625922	6626122	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001130457)	promoter-TSS (NM_001130457)	45.0	NM_001130457	21379.0	Mm.247761	NM_134011	ENSMUSG00000000384	Tbrg4	2310042P22Rik|AA120735|AA408001|AI527316|Cpr2|R74877|Tb-12|mKIAA0948	transforming growth factor beta regulated gene 4	protein-coding	4.90516103069082	4.1362907177834	5.23376431264899	5.13729700109701	4.80962798913157	5.48824701997933	5.53416435508113	5.51866826358121	0.520005666846675	0.125359161258226	0.5545941064809
Merged-chr10-17344036-4	chr10	17343935	17344135	+	817.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-248253.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129328455-4	chr2	129328350	129328550	+	854.6749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-18478.0	NM_010554	16175.0	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-121135147-3	chr6	121135024	121135224	+	921.7222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4102.0	NM_001270475	194401.0	Mm.122399	NM_153396	ENSMUSG00000051586	Mical3	C130040D16Rik|Mical-3|mKIAA1364	microtubule associated monooxygenase, calponin and LIM domain containing 3	protein-coding	-0.336561499519729	-0.321786373933211	0.371796777073729	0.326608517840189	-0.335635407964054	-0.320700217747318	-0.325547248855099	-0.329693214039222	-3.75013372382206	0.14171742686148	1
Merged-chr16-45038439-2	chr16	45038349	45038549	+	614.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT2B2|LTR|ERVL	-55562.0	NM_026439	67896.0	Mm.181074	NM_026439	ENSMUSG00000022665	Ccdc80	2610001E17Rik|DRO1|Ssg1|Urb	coiled-coil domain containing 80	protein-coding	0.996094823098593	0.430547163291939	0.765373791389057	1.25071987247453	0.406767300925339	0.809992839370849	0.424113844245244	0.593328496773734	-1.97316908178488	0.253703958917763	1
Merged-chr11-79121684-4	chr11	79121584	79121784	+	895.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013571, intron 1 of 17)	MIRb|SINE|MIR	24789.0	NM_013571	16706.0	Mm.4745	NM_013571	ENSMUSG00000018334	Ksr1	AW492498|B-KSR1|D11Bhm183e|D11Bhm184e|Ksr|RSU2|hb|mKSR1	kinase suppressor of ras 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-164486411-5	chr2	164486316	164486516	+	980.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026797)	promoter-TSS (NM_026797)	-39.0	NM_026797	52840.0	Mm.256927	NM_026797	ENSMUSG00000017734	Dbndd2	1110017A21Rik|2900022J10Rik|AU041050|AW048677|D2Bwg0891e|Nkip|R74724	dysbindin (dystrobrevin binding protein 1) domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-43185715-4	chr5	43185642	43185842	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028417, intron 5 of 7)	intron (NR_028417, intron 5 of 7)	-47721.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	5.32033189701232	4.79410370825371	4.95788810406392	4.87016176906107	5.18401973982626	5.62157198219315	5.4363393775924	5.29432818792552	0.442373736290529	0.140637802531059	0.585331469539392
Merged-chr3-101617624-2	chr3	101617524	101617724	+	632.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12917.0	NM_144900	11928.0	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding	0.246321653774616	0.752986778079965	0.259386496334105	0.254475144642992	0.813445537028362	0.267187872962008	0.589839649684311	0.789495398170298	1.59105826476582	0.414611663608861	1
Merged-chr15-72917614-4	chr15	72917506	72917706	+	996.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029640, intron 15 of 21)	intron (NM_029640, intron 15 of 21)	-107282.0	NR_002864	353342.0	Mm.440245	NR_002864	ENSMUSG00000106847	Peg13	-	paternally expressed 13	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34845606-2	chr17	34845506	34845706	+	605.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_105936)	promoter-TSS (NR_105936)	-439.0	NR_105936	102465586.0		NR_105936	ENSMUSG00000098460	Mir6970	Gm27589|mmu-mir-6970	microRNA 6970	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-50795642-4	chr17	50795543	50795743	+	884.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028162, intron 17 of 21)	intron (NM_028162, intron 17 of 21)	96962.0	NM_001297747	12228.0	Mm.392910	NM_009770	ENSMUSG00000022863	Btg3	ANA|tob5	B cell translocation gene 3	protein-coding	2.29997474174731	2.49636791770724	1.69522841983733	1.43862182577892	1.73936540363385	3.03371247699355	2.52838446004749	1.19016849937931	0.591695119398271	0.561988197190634	0.960362415684079
Merged-chr16-77020486-3	chr16	77020333	77020533	+	672.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013918, intron 1 of 23)	intron (NM_013918, intron 1 of 23)	6364.0	NM_013918	30940.0	Mm.40986	NM_013918	ENSMUSG00000022867	Usp25	-	ubiquitin specific peptidase 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-44377556-2	chr11	44377442	44377642	+	583.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22521.0	NM_001303244	16160.0	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	-0.0947713959807516	-0.0719922157878429	0.448540222413101	-0.0851035746576865	0.0817396228670094	-0.0703444144004042	1.06354080971885	-0.0840956409471384	1.75875468653304	0.423060382290742	1
Merged-chr2-147190084-1	chr2	147189984	147190184	+	646.0	f1_balb.idr	intron (NR_030769, intron 1 of 5)	intron (NR_030769, intron 1 of 5)	2660.0	NR_108091	78068.0	Mm.261511	NR_108091	ENSMUSG00000053545	6430503K07Rik	-	RIKEN cDNA 6430503K07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-84852092-5	chr18	84851988	84852188	+	793.099976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001348159, intron 1 of 5)	intron (NM_001348159, intron 1 of 5)	750.0	NM_001348159	109672.0	Mm.31018	NM_025797	ENSMUSG00000024646	Cyb5a	0610009N12Rik|Cyb5	cytochrome b5 type A (microsomal)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-123367549-2	chr9	123367449	123367649	+	599.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001348167, intron 1 of 20)	intron (NM_001348167, intron 1 of 20)	622.0	NM_001348168	102436.0	Mm.276076	NM_153168	ENSMUSG00000035202	Lars2	AI035546|Kiaa0028|LEURS	leucyl-tRNA synthetase, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-164947696-4	chr2	164947582	164947782	+	907.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013599)	promoter-TSS (NM_013599)	-537.0	NM_013599	17395.0	Mm.4406	NM_013599	ENSMUSG00000017737	Mmp9	AW743869|B/MMP9|Clg4b|Gel B|MMP-9|pro-MMP-9	matrix metallopeptidase 9	protein-coding	1.84773097385741	2.48571134735123	2.85634734053854	1.57746263785201	2.00022372333095	2.24032290569582	2.16615481212806	2.79060122610614	0.0918960961166092	0.917879724531951	0.998431161219273
Merged-chr12-110497724-2	chr12	110497624	110497824	+	697.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081457, intron 1 of 12)	intron (NM_001081457, intron 1 of 12)	11985.0	NM_012023	26931.0	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-53852034-2	chr11	53851934	53852134	+	617.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_033332, intron 1 of 3)	intron (NR_033332, intron 1 of 3)	7222.0	NR_033332	622459.0	Mm.479656	NR_033332	ENSMUSG00000081769	Gm12216	602-19-115	predicted gene 12216	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-32288636-5	chr4	32288581	32288781	+	984.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-128754.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-144204909-3	chr1	144204816	144205016	+	886.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27544.0	NM_153171	246709.0	Mm.38271	NM_153171	ENSMUSG00000051079	Rgs13	-	regulator of G-protein signaling 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81871913-4	chr15	81871797	81871997	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080633)	promoter-TSS (NM_080633)	-5.0	NM_026737	68479.0	Mm.271715	NM_026737	ENSMUSG00000061360	Phf5a	1110007B08Rik	PHD finger protein 5A	protein-coding	1.90135975186469	1.94443829165682	2.35882382333298	2.61787052959529	1.751134186603	2.31639065148003	2.89627713757132	3.26582010312342	0.936827996622817	0.27009770930045	0.773381444690463
Merged-chr1-164136139-4	chr1	164136044	164136244	+	972.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011347, intron 8 of 15)	intron (NM_011347, intron 8 of 15)	-15691.0	NM_007976	14067.0	Mm.12900	NM_007976	ENSMUSG00000026579	F5	AI173222|Cf-5|Cf5	coagulation factor V	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-36271359-4	chr2	36271256	36271456	+	993.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40930.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-75871555-3	chr13	75871446	75871646	+	854.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028493, exon 12 of 12)	3' UTR (NM_028493, exon 12 of 12)	31660.0	NM_053108	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-125572259-1	chr8	125572159	125572359	+	622.0	f1_balb.idr	Intergenic	Intergenic	-2396.0	NM_001357372	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	-0.226235296896101	0.595109062818019	-0.213198233288771	-0.218068504042706	-0.225013795898844	0.608384863201147	-0.211812549537951	-0.217215065379025	0.0395006580732415	0.987233647591244	1
Merged-chr1-91456335-9	chr1	91456244	91456444	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011066, intron 1 of 22)	intron (NM_011066, intron 1 of 22)	2984.0	NM_011066	18627.0	Mm.482463	NM_011066	ENSMUSG00000055866	Per2	mKIAA0347|mPer2	period circadian clock 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70472968-3	chr11	70472865	70473065	+	950.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12981.0	NM_023158	66102.0	Mm.425692	NM_023158	ENSMUSG00000018920	Cxcl16	0910001K24Rik|AV290116|BB024863|CXCL16v1|CXCL16v2|SR-PSOX|Zmynd15|b2b498Clo	chemokine (C-X-C motif) ligand 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-93547346-4	chr3	93547255	93547455	+	942.68335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7762.0	NM_009112	20194.0	Mm.1	NM_009112	ENSMUSG00000041959	S100a10	42C|AA409961|AL024248|CAL12|CLP11|Cal1l|p10|p11	S100 calcium binding protein A10 (calpactin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107602278-4	chr9	107602192	107602392	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042779, intron 9 of 19)	intron (NM_001042779, intron 9 of 19)	3110.0	NM_009153	20347.0	Mm.4083	NM_009153	ENSMUSG00000057969	Sema3b	SemA|Semaa|sema5|semaV	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84726063-3	chr8	84725966	84726166	+	820.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081982, intron 6 of 9)	PB1D10|SINE|Alu	24609.0	NM_008535	17095.0	Mm.4925	NM_008535	ENSMUSG00000034041	Lyl1	Lyl-1|bHLHa18	lymphoblastomic leukemia 1	protein-coding	1.30458824759986	1.51299683528301	1.55249371211849	0.637093278656352	0.621582510308743	1.52748300225111	0.650888478716138	0.638984729997737	-1.4695243484538	0.359403994602993	0.856306289008338
Merged-chr7-44864915-2	chr7	44864903	44865103	+	819.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_133949, intron 6 of 11)	intron (NM_133949, intron 6 of 11)	4785.0	NM_133949	84113.0	Mm.42855	NM_133949	ENSMUSG00000038502	Ptov1	1110030G05Rik|AU041779|Gcap3	prostate tumor over expressed gene 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-93631547-3	chr1	93631477	93631677	+	784.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021537, intron 2 of 11)	intron (NM_021537, intron 2 of 11)	4150.0	NM_021537	59041.0	Mm.28761	NM_021537	ENSMUSG00000026277	Stk25	1500019J11Rik|AU018434|C86992|Ste20-like|Ysk1	serine/threonine kinase 25 (yeast)	protein-coding	-0.182534527491087	-1.00895016391444	-1.0218572941639	-1.02617529563146	-1.02981053641889	-1.006153134946	-1.01893540279166	-1.02572713344884	-3.09936526392938	0.343406696059999	1
Merged-chr15-93318970-3	chr15	93318867	93319067	+	825.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028315, intron 2 of 4)	intron (NR_028315, intron 2 of 4)	17968.0	NR_028315	67057.0	Mm.4714	NM_024189	ENSMUSG00000022634	Yaf2	2810021M11Rik	YY1 associated factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70520208-1	chr8	70520108	70520308	+	598.0	f1_c57bl6.idr	intron (NM_029366, intron 1 of 4)	PB1D11|SINE|Alu	2972.0	NM_029366	75620.0	Mm.482129	NM_029366	ENSMUSG00000055553	Kxd1	0610030B01Rik|2810422J05Rik|C78305	KxDL motif containing 1	protein-coding	-0.716237744739947	0.0494062112591463	-0.708535853739007	-0.711427291429827	-0.427796444454228	-0.703953110769027	-0.707710144426032	-0.710921823867411	-1.65205339647367	0.568904339895239	1
Merged-chr11-119041081-4	chr11	119040996	119041196	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013926)	promoter-TSS (NM_013926)	-183.0	NM_013926	30951.0	Mm.99953	NM_013926	ENSMUSG00000025578	Cbx8	Pc3	chromobox 8	protein-coding	5.78030009625582	5.51577224391335	5.10529102928656	6.69416768486815	5.68751070355868	5.70545916419987	6.20096432764898	5.83788395455964	-0.0413664589480355	0.896792109692292	0.998431161219273
Merged-chr7-143480742-2	chr7	143480642	143480842	+	661.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001042760, intron 5 of 10)	intron (NM_001042760, intron 5 of 10)	5626.0	NM_001042760	18400.0	Mm.271740	NM_008767	ENSMUSG00000000154	Slc22a18	AW260131|BWR1A|BWSCR1A|HET|ITM|Impt1|Orctl2|Slc22a1l|TSSC5|p45-BWR1A	solute carrier family 22 (organic cation transporter), member 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88023033-4	chr3	88022956	88023156	+	982.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022031, intron 6 of 6)	CpG	4455.0	NM_022031	73940.0	Mm.294467	NM_022031	ENSMUSG00000004894	Hapln2	4930401E20Rik|Bral1	hyaluronan and proteoglycan link protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-51278778-2	chr3	51278678	51278878	+	576.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_073429)	TTS (NR_073429)	-1264.0	NM_001291062	69257.0	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165233653-3	chr2	165233581	165233781	+	831.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_174988, intron 1 of 11)	CpG	1056.0	NM_174988	104010.0	Mm.151819	NM_174988	ENSMUSG00000053166	Cdh22	-	cadherin 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-19927203-4	chr4	19927111	19927311	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4645.0	NM_175406	242341.0	Mm.19298	NM_175406	ENSMUSG00000028238	Atp6v0d2	1620401A02Rik|AI324824|V-ATPase	ATPase, H+ transporting, lysosomal V0 subunit D2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120571282-4	chr11	120571162	120571362	+	950.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011032, intron 2 of 10)	intron (NM_011032, intron 2 of 10)	1991.0	NM_011032	18453.0	Mm.16660	NM_011032	ENSMUSG00000025130	P4hb	ERp59|PDI|Pdia1|Thbp	prolyl 4-hydroxylase, beta polypeptide	protein-coding	2.85520620386371	2.99732422742484	4.08187204883915	4.96768848259239	5.73899535674074	5.77269547015395	5.86564859775805	6.41891659103285	2.321708707745	5.92830969003933e-08	5.64506822707079e-06
Merged-chr15-58829038-4	chr15	58828923	58829123	+	977.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-5596.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-22127069-1	chr8	22126969	22127169	+	705.0	f1_balb.idr	Intergenic	Intergenic	-2002.0	NM_001347318	330721.0	Mm.113940	NM_177898	ENSMUSG00000037738	Nek5	6530411J22|BB049667	NIMA (never in mitosis gene a)-related expressed kinase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-55858696-4	chr16	55858612	55858812	+	803.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001134457, intron 4 of 5)	intron (NM_001134457, intron 4 of 5)	-20071.0	NM_001159395	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-105683347-1	chr5	105683247	105683447	+	666.0	f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-16622.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	1.0008513408131	1.15236697403079	0.603440618222864	0.595303846820285	1.38400905180507	0.832739120021091	1.4475758458689	0.596729833078779	1.1925055493586	0.450415585229822	0.916671863324789
Merged-chr16-13830739-2	chr16	13830639	13830839	+	610.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346109, intron 3 of 7)	intron (NM_001346109, intron 3 of 7)	11488.0	NM_001346111	18203.0	Mm.380410	NM_010946	ENSMUSG00000022681	Ntan1	PNAA|PNAD	N-terminal Asn amidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-45474914-4	chr17	45474820	45475020	+	868.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027649)	promoter-TSS (NM_027649)	18.0	NM_027649	71020.0	Mm.44257	NM_027649	ENSMUSG00000023935	Spats1	1700011H05Rik|4933400B06Rik|Ddip|Srsp1	spermatogenesis associated, serine-rich 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-69563282-3	chr18	69563185	69563385	+	763.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 6 of 19)	intron (NM_001361128, intron 6 of 19)	217125.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134243768-4	chr6	134243648	134243848	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 5 of 8)	intron (NM_001303102, intron 5 of 8)	-152581.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-72914255-4	chr5	72914137	72914337	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113423)	promoter-TSS (NM_001113423)	-125.0	NM_001113423	75991.0	Mm.121285	NM_153567	ENSMUSG00000036087	Slain2	5033405K12Rik|8030444K12Rik|AI596370	SLAIN motif family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-49273025-3	chr13	49272933	49273133	+	829.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015759, intron 14 of 17)	intron (NM_015759, intron 14 of 17)	-24327.0	NM_028340	66329.0	Mm.34308	NM_025491	ENSMUSG00000021384	Susd3	1700017I11Rik|2810440J20Rik	sushi domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-183553375-3	chr1	183553277	183553477	+	855.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	134129.0	NM_001308052	78772.0	Mm.29003	NM_030175	ENSMUSG00000053461	Hhipl2	4930507C10Rik|AW208802|Hhip3	hedgehog interacting protein-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16441491-2	chr7	16441391	16441591	+	823.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-11288.0	NM_026938	69094.0	Mm.29633	NM_026938	ENSMUSG00000019158	Tmem160	1810008O21Rik	transmembrane protein 160	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120094234-2	chr8	120094134	120094334	+	587.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133967, intron 1 of 7)	intron (NM_133967, intron 1 of 7)	7238.0	NM_133967	102193.0	Mm.240076	NM_133967	ENSMUSG00000031823	Zdhhc7	AL024087|Gramp2	zinc finger, DHHC domain containing 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116434729-4	chr11	116434617	116434817	+	871.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176902, intron 2 of 2)	CpG-2855	504.0	NR_003376	664849.0	Mm.258466	NR_003376		Gm7367	EG664849	1110014K08Rik pseudogene	pseudo	2.9269814476365	2.17218020753573	2.85335136301316	3.27610866852229	3.19189126899765	1.45201533230338	2.55549454736603	1.36645337232214	-0.892607728964855	0.332921949099933	0.833345452772687
Merged-chr1-35810748-4	chr1	35810639	35810839	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-257661.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-87743115-4	chr6	87743027	87743227	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159697, intron 2 of 7)	intron (NM_001159697, intron 2 of 7)	12258.0	NM_001159697	58229.0	Mm.333229	NM_021418	ENSMUSG00000068263	Efcc1	Ccdc48	EF hand and coiled-coil domain containing 1	protein-coding	-1.18832717429738	-1.16380929885254	-0.856565824811958	-1.18328408639367	-1.18787580914644	-1.16149229066421	-0.849604865165746	-1.18171197755832	0.0406512889656815	0.990321405100139	1
Merged-chr5-110417213-3	chr5	110417117	110417317	+	614.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142642, intron 3 of 18)	intron (NM_001142642, intron 3 of 18)	-30090.0	NM_028596	381668.0	Mm.348782	NM_028596	ENSMUSG00000043323	Fbrsl1	2410025L10Rik|AI467568|Gm1049|Gm29766|mKIAA1545	fibrosin-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81571765-4	chr10	81571703	81571903	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3484.0	NM_019725	21886.0	Mm.38608	NM_019725	ENSMUSG00000034771	Tle2	Grg2|mKIAA4188	transducin-like enhancer of split 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34291771-4	chr17	34291659	34291859	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3988.0	NM_010378	14960.0	Mm.235338	NM_010378	ENSMUSG00000036594	H2-Aa	Aalpha|H-2Aa|H2Aa|I-Aalpha|IAalpha|Ia-1|Ia1	histocompatibility 2, class II antigen A, alpha	protein-coding	6.63292131444864	7.4198325332913	6.08536752248546	7.02003661199095	7.21064888701017	7.59432594682883	6.18441249857652	6.71464228345583	0.158488326868555	0.709182498858764	0.998431161219273
Merged-chr1-191733939-4	chr1	191733826	191734026	+	752.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001134829, intron 2 of 7)	intron (NM_001134829, intron 2 of 7)	15531.0	NM_001134829	226856.0	Mm.277958	NM_172266	ENSMUSG00000026623	Lpgat1	AI649174|AW112037|BC013667	lysophosphatidylglycerol acyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-103007629-3	chr2	103007458	103007658	+	833.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	65955.0	NM_175094	27402.0	Mm.315011	NM_175094	ENSMUSG00000010914	Pdhx	AI481367|E3bp|Pdx1	pyruvate dehydrogenase complex, component X	protein-coding	-1.29633872064033	-1.26720680975202	-1.27768629845203	-1.28629446248818	-0.70879630402184	-1.2649358608345	-1.2753139719142	-1.28475360524138	2.50884260628271	0.468217847016783	1
Merged-chr5-144006248-2	chr5	144006148	144006348	+	991.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177682, intron 6 of 14)	ORR1C1|LTR|ERVL-MaLR	8605.0	NM_177682	231874.0	Mm.320432	NM_177682	ENSMUSG00000029617	Ccz1	AU022870	CCZ1 vacuolar protein trafficking and biogenesis associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-123171248-4	chr6	123171153	123171353	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER21C|LTR|ERVL	-1770.0	NM_001004159	381809.0	Mm.333372	NM_001004159	ENSMUSG00000067767	Clec4b2	Aplra1|F830043G12Rik|mDCAR1	C-type lectin domain family 4, member b2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-17463719-7	chr6	17463622	17463822	+	908.507935	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008591)	promoter-TSS (NM_008591)	-235.0	NM_008591	17295.0	Mm.86844	NM_008591	ENSMUSG00000009376	Met	AI838057|HGF|HGFR|Par4|c-Met	met proto-oncogene	protein-coding	-0.114729966761291	-0.495995186701762	-0.500288253408933	-0.503607522593699	-0.508308777609017	-0.495028873849818	0.308031443556289	-0.503027206757302	1.39236649799336	0.611914747192908	1
Merged-chr16-58498595-4	chr16	58498487	58498687	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357433, intron 2 of 10)	intron (NM_001357433, intron 2 of 10)	24839.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-53115243-2	chr2	53115143	53115343	+	620.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 17 of 26)	intron (NM_172409, intron 17 of 26)	75944.0	NM_018785	56194.0	Mm.257474	NM_018785	ENSMUSG00000061136	Prpf40a	2810012K09Rik|FBP-11|FBP11|Fnbp11|Fnbp3	pre-mRNA processing factor 40A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21018788-2	chr9	21018688	21018888	+	927.111084	f1_balb.idr|f1_c57bl6.idr	intron (NM_010493, intron 1 of 6)	intron (NM_010493, intron 1 of 6)	2848.0	NM_010493	15894.0	Mm.435508	NM_010493	ENSMUSG00000037405	Icam1	CD54|Icam-1|Ly-47|MALA-2	intercellular adhesion molecule 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-51857923-4	chr11	51857851	51858051	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199299)	promoter-TSS (NM_199299)	-321.0	NM_001357588	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-148325142-4	chr3	148325027	148325227	+	994.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	629508.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	0.5252587978675	0.215450521984596	0.204818059956873	0.196462644890894	0.184413676811695	1.4111774855934	1.14647996621644	0.197932236871103	3.13216684773156	0.117278561836964	1
Merged-chr4-43286900-3	chr4	43286772	43286972	+	657.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177195, intron 2 of 28)	(TTG)n|Simple_repeat|Simple_repeat	19713.0	NM_177195	320571.0	Mm.74465	NM_177195	ENSMUSG00000028457	Atp8b5	4930417M19Rik|Feta	ATPase, class I, type 8B, member 5	protein-coding	-0.01615268911526	1.14309036797919	0.00566471411103625	-0.00240559000024909	-0.0140788290553376	1.15970407198092	0.00794418489048215	-0.000984688989527638	0.0395252468598434	0.985617571235859	1
Merged-chr3-27338623-4	chr3	27338537	27338737	+	866.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009425, exon 5 of 5)	3' UTR (NM_009425, exon 5 of 5)	21560.0	NM_009425	22035.0	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-32318125-2	chr17	32318025	32318225	+	818.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019774, intron 2 of 13)	intron (NM_019774, intron 2 of 13)	3113.0	NM_001357760	56399.0	Mm.328945	NM_019774	ENSMUSG00000024045	Akap8	1200016A02Rik|AA673585|AKAP-8|AKAP95|AU015639	A kinase (PRKA) anchor protein 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-62287090-4	chr4	62286979	62287179	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025286, intron 1 of 3)	intron (NM_025286, intron 1 of 3)	650.0	NM_025286	20530.0	Mm.292539	NM_025286	ENSMUSG00000066152	Slc31a2	AI604396|CTR2	solute carrier family 31, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-20005675-4	chr10	20005570	20005770	+	940.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008580, intron 2 of 29)	intron (NM_008580, intron 2 of 29)	71144.0	NM_008580	26408.0	Mm.6595	NM_008580	ENSMUSG00000071369	Map3k5	7420452D20Rik|ASK|ASK1|MAPKKK5|Mekk5	mitogen-activated protein kinase kinase kinase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-135694488-2	chr7	135694388	135694588	+	606.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081117, exon 12 of 14)	exon (NM_001081117, exon 12 of 14)	21891.0	NM_001081117	17345.0	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-39714178-4	chr1	39714069	39714269	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145660, intron 2 of 14)	intron (NM_001145660, intron 2 of 14)	6820.0	NM_001145660	619289.0	Mm.334107	NM_001145660	ENSMUSG00000057173	Rfx8	4933400N17Rik	regulatory factor X 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-23761501-4	chr13	23761360	23761560	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178192)	promoter-TSS (NM_178192)	-211.0	NM_178192	326619.0	Mm.228709	NM_178192	ENSMUSG00000060093	Hist1h4a	-	histone cluster 1, H4a	protein-coding	6.98492074373911	6.45600299296268	6.94569390209626	7.05392030903462	6.43851801063915	6.72065925231209	6.45799118871268	6.23842942971266	-0.441660095250705	0.0278413073384825	0.225195509290189
Merged-chr6-39257969-3	chr6	39257970	39258170	+	674.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51297.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-47505771-2	chr14	47505663	47505863	+	657.666687	f1_balb.idr|f1_c57bl6.idr	intron (NR_027414, intron 2 of 5)	ORR1D2|LTR|ERVL-MaLR	33202.0	NM_001146085	78938.0	Mm.11935	NM_030236	ENSMUSG00000037536	Fbxo34	2900057B08Rik|5830426G16Rik	F-box protein 34	protein-coding	1.88718707351923	2.39604188741346	2.72566460973561	2.12583151621791	2.26592805805524	1.71992862228858	2.74673463133287	2.5764852293691	0.153075112442769	0.857685583560681	0.998431161219273
Merged-chr2-30592991-2	chr2	30592891	30593091	+	717.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2053.0	NM_030137	78617.0	Mm.40413	NM_030137	ENSMUSG00000047363	Cstad	9530039B02Rik	CSA-conditional, T cell activation-dependent protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-122680000-4	chr10	122679885	122680085	+	920.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_106182)	TTS (NR_106182)	670.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	1.34719861356422	1.95563189823749	0.805906518472099	0.994860415779523	1.55735473744316	1.24872826584428	0.809180535466843	1.31173129785662	-0.376581900822966	0.780762492413871	0.998431161219273
Merged-chr19-4104912-2	chr19	4104812	4105012	+	583.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_075078, exon 6 of 24)	non-coding (NR_075078, exon 6 of 24)	4290.0	NM_008851	18739.0	Mm.1860	NM_008851	ENSMUSG00000024851	Pitpnm1	DRES9|Mpt-1|Nir-2|PITPnm 1|Pitpnm|R75447|Rd9|RdgB|RdgB1	phosphatidylinositol transfer protein, membrane-associated 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71159981-1	chr17	71159881	71160081	+	573.0	f1_c57bl6.idr	Intergenic	Intergenic	-23551.0	NM_001357791	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	1.38731809257503	1.43553822049311	0.639347248551694	0.633458385020036	1.00108897814556	1.00171168874959	0.641035443198929	0.793816743869441	-1.1952258238995	0.454760622409868	0.919120493489568
Merged-chr9-40974233-4	chr9	40974135	40974335	+	964.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019465, intron 9 of 9)	MTEa|LTR|ERVL-MaLR	-9682.0	NM_001357359	70989.0	Mm.335087	NM_001081121	ENSMUSG00000032023	Jhy	4931429I11Rik|BB239335	junctional cadherin complex regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-14382488-2	chr17	14382388	14382588	+	561.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_022315, intron 9 of 12)	intron (NM_022315, intron 9 of 12)	16454.0	NR_027986	74917.0	Mm.32228	NM_183107		4930474M22Rik	-	RIKEN cDNA 4930474M22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-137571080-3	chr2	137570979	137571179	+	861.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-454559.0	NM_013822	16449.0	Mm.22398	NM_013822	ENSMUSG00000027276	Jag1	ABE2|Gsfabe2|Htu|Ozz|Ser-1	jagged 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-98066772-1	chr7	98066672	98066872	+	640.0	f1_balb.idr	intron (NM_008663, intron 33 of 48)	intron (NM_008663, intron 33 of 48)	42476.0	NM_001256082	17921.0	Mm.1403	NM_008663	ENSMUSG00000030761	Myo7a	Hdb|Myo7|USH1B|nmf371|polka|sh-1|sh1	myosin VIIA	protein-coding	0.460106434666089	0.089443098369262	0.0831720255416938	0.728355617893696	0.071436659269579	0.0908537998390624	0.0845569963702859	0.826670324298244	-0.298621715469994	0.890607708255906	1
Merged-chr11-97142494-4	chr11	97142379	97142579	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198100, intron 6 of 8)	MER94|DNA|hAT-Blackjack	3940.0	NR_106094	102466822.0		NR_106094	ENSMUSG00000099286	Mir7235	Gm27986|mmu-mir-7235	microRNA 7235	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-25427580-3	chr10	25427510	25427710	+	645.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013511, intron 1 of 19)	intron (NM_013511, intron 1 of 19)	19242.0	NM_013511	13822.0	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-95270583-1	chr4	95270483	95270683	+	565.0	f0_balb.idr	Intergenic	Intergenic	-218361.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-37180399-2	chr3	37180299	37180499	+	678.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2486.0	NR_153188	102639848.0	Mm.424479	NR_153188		Gm12532	-	predicted gene 12532	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-38296864-2	chr15	38296764	38296964	+	942.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_001289471, exon 3 of 5)	exon (NM_001289471, exon 3 of 5)	3036.0	NM_001357677	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-53369939-2	chr19	53369839	53370039	+	923.3000490000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001008543, intron 4 of 5)	intron (NM_001008543, intron 4 of 5)	20102.0	NM_001356986	76479.0	Mm.313687	NM_172429	ENSMUSG00000025024	Smndc1	-	survival motor neuron domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97856425-4	chr6	97856309	97856509	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113198, intron 1 of 9)	intron (NM_001113198, intron 1 of 9)	49351.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	3.38921865947533	3.26465031075037	3.97656489684423	3.25429975962753	4.11482330155542	3.49137153853715	2.27827609958959	3.27127164207134	-0.075910790205117	0.901689136458092	0.998431161219273
Merged-chr13-52648065-2	chr13	52647965	52648165	+	664.666626	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001198977, exon 14 of 14)	3' UTR (NM_001198977, exon 14 of 14)	51183.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-102048314-2	chr5	102048214	102048414	+	729.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 1 of 66)	intron (NM_172882, intron 1 of 66)	21607.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-41739068-2	chr2	41738968	41739168	+	648.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_053011, intron 5 of 90)	ORR1A2|LTR|ERVL-MaLR	708500.0	NR_105754	102465171.0		NR_105754	ENSMUSG00000098660	Mir6336	Gm27584|mmu-mir-6336	microRNA 6336	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-87471089-2	chr12	87470989	87471189	+	582.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025507, intron 1 of 13)	MTD|LTR|ERVL-MaLR	1210.0	NM_025507	66354.0	Mm.271174	NM_025507	ENSMUSG00000021039	Snw1	2310008B08Rik|AW048543|NCoA-62|SKIP|Skiip	SNW domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-72782296-4	chr11	72782196	72782396	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024926, intron 3 of 3)	ORR1E|LTR|ERVL-MaLR	13543.0	NM_001024926	192986.0	Mm.194755	NM_001024926	ENSMUSG00000057778	Cyb5d2	9330151E16Rik|Gm2	cytochrome b5 domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-7062760-3	chr10	7062657	7062857	+	822.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39572.0	NM_001033391	320495.0	Mm.331674	NM_001033391	ENSMUSG00000064065	Ipcef1	A130090K04Rik	interaction protein for cytohesin exchange factors 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-46254327-2	chr17	46254227	46254427	+	913.875	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001111142, exon 1 of 6)	5' UTR (NM_001111142, exon 1 of 6)	162.0	NM_001111142	224813.0	Mm.70999	NM_001111142	ENSMUSG00000071073	Lrrc73	Gm88	leucine rich repeat containing 73	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-43360516-3	chr5	43360430	43360630	+	848.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-125176.0	NR_028417	665934.0	Mm.381491	NR_028417	ENSMUSG00000085720	Gm7854	EG665934	predicted gene 7854	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5630412-3	chr17	5630312	5630512	+	878.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	MLT1F2|LTR|ERVL-MaLR	137812.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-21669930-3	chr18	21669823	21670023	+	861.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17555.0	NM_001081403	225266.0	Mm.436836	NM_001081403	ENSMUSG00000042514	Klhl14	6330403N15Rik|AI785250|printor	kelch-like 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-58677824-5	chr1	58677756	58677956	+	816.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347056, intron 5 of 13)	intron (NM_001347056, intron 5 of 13)	14589.0	NM_001347056	108812.0	Mm.442063	NM_175370	ENSMUSG00000047528	Als2cr12	4933405P16Rik|4933425F06Rik	amyotrophic lateral sclerosis 2 chromosome region 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-22928449-4	chr2	22928367	22928567	+	752.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149721, intron 7 of 10)	intron (NR_149721, intron 7 of 10)	32945.0	NM_001355467	56075.0	Mm.249752	NM_019501	ENSMUSG00000026784	Pdss1	2610203G20Rik|2700031G06Rik|TPT|TPT 1|Tprt|mDLP1|mSPS1	prenyl (solanesyl) diphosphate synthase, subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-105046098-3	chr3	105045990	105046190	+	859.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030249, intron 1 of 5)	intron (NM_030249, intron 1 of 5)	6863.0	NM_001163332	80281.0	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-59201115-4	chr14	59201027	59201227	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360611)	promoter-TSS (NM_001360611)	-101.0	NM_027764	71330.0	Mm.234195	NM_027764	ENSMUSG00000035469	Rcbtb1	5430409I18Rik|AW111883|CLLD7|CLLL7	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-23309292-2	chr16	23309192	23309392	+	561.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252506, intron 1 of 6)	MER5A|DNA|hAT-Charlie	18822.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-68125193-4	chr10	68125086	68125286	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023598, intron 7 of 9)	intron (NM_023598, intron 7 of 9)	145616.0	NM_001359319	170799.0	Mm.209844	NM_133244	ENSMUSG00000037846	Rtkn2	B130039D23Rik|Mbf|Plekhk1	rhotekin 2	protein-coding	5.67310566020182	5.38409176154054	5.82159364584115	5.85937933999198	6.40941859767441	6.06812687011864	5.65977236187842	6.01923626226722	0.410799188560799	0.105551247684474	0.506967121584593
Merged-chr1-54565604-3	chr1	54565499	54565699	+	871.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7915.0	NM_001163314	241062.0	Mm.103539	NM_175508	ENSMUSG00000073678	Pgap1	5033403E17Rik|9030223K07Rik|A530084K22|D230012E17Rik|oto	post-GPI attachment to proteins 1	protein-coding	2.814725262185	2.93437922396972	3.16581611144012	2.61333368224999	3.45721505516919	4.2827371897109	2.39052024342227	3.49597811992159	1.09270508067438	0.0921635053460578	0.469744153416314
Merged-chr15-68394990-3	chr15	68394909	68395109	+	851.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53720.0	NR_029718	387228.0		NR_029718	ENSMUSG00000065437	Mir30d	Mirn30d|mir-30d|mmu-mir-30d	microRNA 30d	ncRNA	-1.23826193677681	-1.21241040182355	-1.22270105026776	-0.934241458926562	-1.23783648736863	-1.21018037537722	-1.22037147302458	-0.929982742503718	0.0323590357436516	0.9924297640193	1
Merged-chr9-107565285-2	chr9	107565185	107565385	+	588.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_019742, exon 3 of 3)	3' UTR (NM_019742, exon 3 of 3)	2030.0	NM_019742	80385.0	Mm.21739	NM_019742	ENSMUSG00000010054	Tusc2	1190001E22Rik|AA407686|Fus1|Lgcc|PAP|Pdap2	tumor suppressor candidate 2	protein-coding	0.413207902632708	1.35291709065062	0.248386050287499	0.239597487799869	0.419121713624132	1.36940840128901	0.250871018238229	0.241143809849719	0.0396899215906468	0.982752903346195	0.998431161219273
Merged-chr7-89308565-2	chr7	89308465	89308665	+	861.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360746, intron 2 of 14)	intron (NM_001360746, intron 2 of 14)	30222.0	NM_028343	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-20941562-3	chr1	20941464	20941664	+	959.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10062.0	NM_027974	71877.0	Mm.29178	NM_027974	ENSMUSG00000041809	Efhc1	1700029F22Rik|mRib72-1|myoclonin1	EF-hand domain (C-terminal) containing 1	protein-coding	1.9324030488126	2.70586600131493	1.61272831173291	2.94755748534714	4.93840807340402	5.33085550703545	4.18516012426196	4.8460384435604	3.61078302611616	6.48076905043521e-10	1.11080381524459e-07
Merged-chr13-41747110-2	chr13	41747010	41747210	+	989.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	100378.0	NM_175417	109254.0	Mm.25195	NM_175417	ENSMUSG00000058022	Adtrp	9530008L14Rik	androgen dependent TFPI regulating protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-55178770-3	chr13	55178662	55178862	+	878.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25944.0	NM_008011	14186.0	Mm.276715	NM_008011	ENSMUSG00000005320	Fgfr4	Fgfr-4	fibroblast growth factor receptor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-122620050-8	chr3	122620060	122620260	+	821.770813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153118)	promoter-TSS (NM_153118)	-446.0	NM_001114665	214459.0	Mm.209491	NM_153118	ENSMUSG00000039735	Fnbp1l	2610318I01Rik|AW548221|TOCA1|toca-1	formin binding protein 1-like	protein-coding	1.2494170689694	0.9497677682788	1.89006966335393	1.13436441999801	1.09223209997729	1.58593501594818	2.3358447342293	1.61357087434665	1.18668100077622	0.325069158595154	0.827686054135822
Merged-chr16-44066584-4	chr16	44066486	44066686	+	965.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER2|LTR|ERV1	-24578.0	NM_001359085	207798.0	Mm.19316	NM_153528	ENSMUSG00000036292	Gramd1c	4921521N14Rik	GRAM domain containing 1C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-95612388-4	chr9	95612305	95612505	+	899.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-25223.0	NM_029620	76477.0	Mm.46016	NM_029620	ENSMUSG00000015354	Pcolce2	2400001O18Rik|Pcpe2	procollagen C-endopeptidase enhancer 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101892833-2	chr7	101892733	101892933	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291352, intron 1 of 5)	B1_Mm|SINE|Alu	-3498.0	NM_001291348	75430.0	Mm.284491	NM_027532	ENSMUSG00000030649	Anapc15	3200002M19Rik|6330414C15Rik|APC15	anaphase prompoting complex C subunit 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-32580672-4	chr11	32580581	32580781	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 4 of 18)	intron (NM_009288, intron 4 of 18)	47415.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	4.70441957406172	5.09629439835382	4.43212745072538	4.89447928747567	4.80792295249462	5.34463507774432	4.40740403482505	5.11860230410099	0.193146942961198	0.583271905113762	0.966599221005409
Merged-chr11-120342025-2	chr11	120341941	120342141	+	896.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	5372.0	NR_105900	102465564.0		NR_105900	ENSMUSG00000098955	Mir6935	Gm27344|mmu-mir-6935	microRNA 6935	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-34905165-4	chr2	34905091	34905291	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028716, intron 6 of 14)	intron (NM_028716, intron 6 of 14)	8785.0	NM_028716	74016.0	Mm.65691	NM_028716	ENSMUSG00000026873	Phf19	3110009G19Rik|3321402G02Rik	PHD finger protein 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33894685-4	chr16	33894589	33894789	+	978.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 5 of 14)	ORR1D2|LTR|ERVL-MaLR	65024.0	NM_001145884	16419.0	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-97998522-2	chr3	97998422	97998622	+	905.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15016.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-135402502-4	chr3	135402386	135402586	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20947.0	NM_025902	67006.0	Mm.269993	NM_025902	ENSMUSG00000028165	Cisd2	1500009M05Rik|1500026J14Rik|1500031D15Rik|AI848398|B630006A20Rik|Miner1|Naf-1|Noxp70|Zcd2	CDGSH iron sulfur domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-94965249-4	chr13	94965137	94965337	+	828.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11107.0	NM_172590	218460.0	Mm.33856	NM_172590	ENSMUSG00000042015	Wdr41	B830029I03Rik|MSTP048	WD repeat domain 41	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30779318-2	chr2	30779218	30779418	+	644.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22419.0	NM_198000	73598.0	Mm.34166	NM_198000	ENSMUSG00000044320	1700001O22Rik	1700113K14Rik|4930549G18Rik	RIKEN cDNA 1700001O22 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-38343634-3	chr18	38343538	38343738	+	893.7666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4645.0	NM_011937	26384.0	Mm.22374	NM_011937	ENSMUSG00000052102	Gnpda1	GNPDA|Gnp1|Gnpi|oscillin	glucosamine-6-phosphate deaminase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-68147032-3	chr10	68146953	68147153	+	759.644409	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023598, intron 4 of 9)	intron (NM_023598, intron 4 of 9)	131673.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	0.761599853223207	0.51199826213759	0.969040734813861	0.497500622243275	0.882368900380239	0.513836871043653	1.19998182778539	1.05056120541436	1.30205850409854	0.429396972076937	1
Merged-chr1-161556886-1	chr1	161556786	161556986	+	798.0	f0_balb.idr	Intergenic	Intergenic	62229.0	NM_183391	240873.0	Mm.276823	NM_183391	ENSMUSG00000066755	Tnfsf18	Gitrl|Tnlg2a	tumor necrosis factor (ligand) superfamily, member 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-54161023-4	chr11	54160926	54161126	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4|LINE|L1	52262.0	NR_045506	71056.0	Mm.56332	NR_045506	ENSMUSG00000086209	4933405E24Rik	-	RIKEN cDNA 4933405E24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-5689603-2	chr18	5689503	5689703	+	814.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360981, intron 2 of 8)	intron (NM_001360981, intron 2 of 8)	96956.0	NM_001360981	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-11613270-3	chr17	11613175	11613375	+	932.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016694, intron 6 of 11)	intron (NM_016694, intron 6 of 11)	269914.0	NR_045808	52027.0	Mm.442257	NR_045808		D17Ertd648e	-	DNA segment, Chr 17, ERATO Doi 648, expressed	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-81371913-1	chr7	81371813	81372013	+	565.0	f0_balb.idr	intron (NM_001357107, intron 1 of 9)	intron (NM_001357107, intron 1 of 9)	562.0	NM_001357107	12877.0	Mm.273122	NM_007755	ENSMUSG00000025586	Cpeb1	AU024112|Cpe-bp1|Cpeb|mCPEB|mCpeb-1	cytoplasmic polyadenylation element binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-14048581-2	chr2	14048481	14048681	+	735.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001012396, intron 1 of 5)	intron (NM_001012396, intron 1 of 5)	7454.0	NM_001012396	30963.0	Mm.241205	NM_013935	ENSMUSG00000063275	Hacd1	Ptpla	3-hydroxyacyl-CoA dehydratase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-86135507-4	chr15	86135447	86135647	+	921.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001205353, exon 19 of 19)	3' UTR (NM_001205353, exon 19 of 19)	-50181.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	2.43717841452904	1.33303324682751	2.55266048618279	3.48163854446511	2.85561202725595	1.34223173459937	1.58456937704775	2.68800142296189	-0.740093414518268	0.46125499763292	0.920953234475195
Merged-chr14-32888678-1	chr14	32888578	32888778	+	620.5	f0_balb.idr	intron (NM_178791, intron 3 of 7)	intron (NM_178791, intron 3 of 7)	31922.0	NM_001361602	320736.0	Mm.187910	NM_178791	ENSMUSG00000050666	Vstm4	E130203B14Rik	V-set and transmembrane domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-87355819-1	chr3	87355719	87355919	+	575.0	f1_c57bl6.idr	Intergenic	Intergenic	-2062.0	NM_009690	11801.0	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	2.5740775731017	1.43154544197615	2.01910741032333	2.45078844095065	2.43573967042065	2.72764737309239	2.43407813778681	2.11900316500749	0.545536365688883	0.535748675598811	0.953224806203837
Merged-chr16-93884951-2	chr16	93884851	93885051	+	798.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028083, intron 2 of 13)	intron (NM_028083, intron 2 of 13)	1050.0	NM_028083	110749.0	Mm.274222	NM_028083	ENSMUSG00000022945	Chaf1b	2600017H24Rik|C76145|CAF-I p60|CAF-Ip60|CAF1|CAF1A|CAF1P60|MPHOSPH7	chromatin assembly factor 1, subunit B (p60)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-166731049-3	chr1	166730938	166731138	+	706.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49193.0	NM_001347135	240894.0	Mm.246610	NM_172844	ENSMUSG00000026560	Fmo9	4831428F09Rik	flavin containing monooxygenase 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53125276-4	chr4	53125175	53125375	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 5 of 49)	intron (NM_013454, intron 5 of 49)	34620.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-6241454-4	chr18	6241354	6241554	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008448)	promoter-TSS (NM_008448)	70.0	NM_008448	16573.0	Mm.223744	NM_008448	ENSMUSG00000006740	Kif5b	AL022807|Khc|Khcs|Kns1|Ukhc	kinesin family member 5B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90533229-2	chr2	90533111	90533311	+	690.5	f0_c57.idr|f1_balb.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	47436.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	1.77633359761932	1.72600656150388	1.29375130795245	2.67206313936954	1.99352851056892	1.07758311058252	1.05304882522821	2.00317873989512	-0.952494305204624	0.415517064289986	0.896676881011847
Merged-chr10-100138710-4	chr10	100138549	100138749	+	982.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	122828.0	NM_013598	17311.0	Mm.45124	NM_013598	ENSMUSG00000019966	Kitl	Clo|Con|Gb|Kitlg|Mgf|SCF|SF|SLF|Sl|blz|contrasted	kit ligand	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-103981879-2	chr11	103981779	103981979	+	729.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_007477, intron 4 of 4)	intron (NM_007477, intron 4 of 4)	15008.0	NM_007477	11841.0	Mm.5061	NM_007477	ENSMUSG00000062421	Arf2	-	ADP-ribosylation factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-160048296-4	chr2	160048193	160048393	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC2|LINE|L1	31640.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-73444888-2	chr14	73444788	73444988	+	982.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-59599.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-155081901-2	chr1	155081801	155082001	+	564.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_151545, exon 1 of 7)	non-coding (NR_151545, exon 1 of 7)	1363.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-36031954-4	chr17	36031846	36032046	+	964.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010398, intron 2 of 6)	intron (NM_010398, intron 2 of 6)	755.0	NM_010398	15040.0	Mm.439648	NM_010398	ENSMUSG00000067212	H2-T23	37b|37c|H-2T23|H2-Qa1|Qa-1|Qa-1(b)|Qa1|Qed-1|T18c|T18c(37)|T23b|T23d	histocompatibility 2, T region locus 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-106759749-4	chr1	106759642	106759842	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001316750)	promoter-TSS (NM_001316750)	0.0	NM_027534	70750.0	Mm.458911	NM_027534	ENSMUSG00000009905	Kdsr	6330410P18Rik|9430079B08Rik|Fvt1	3-ketodihydrosphingosine reductase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-106374344-2	chr1	106374244	106374444	+	973.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_133821, intron 12 of 16)	Lx7|LINE|L1	172287.0	NR_106164	102466254.0		NR_106164	ENSMUSG00000098344	Mir3473f	Gm27846|mmu-mir-3473f	microRNA 3473f	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-96719884-4	chr9	96719776	96719976	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359960)	promoter-TSS (NM_001359960)	-26.0	NM_001359959	245007.0	Mm.485954	NM_175537	ENSMUSG00000040433	Zbtb38	A930014K01Rik|CIBZ	zinc finger and BTB domain containing 38	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-78985733-2	chr11	78985633	78985833	+	624.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159301)	promoter-TSS (NM_001159301)	-809.0	NM_010708	16859.0	Mm.341434	NM_010708	ENSMUSG00000001123	Lgals9	AA407335|AI194909|AI265545|LGALS35|Lgals5|gal-9|galectin-9	lectin, galactose binding, soluble 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-178098318-2	chr2	178098218	178098418	+	574.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19893.0	NM_001162922	353208.0	Mm.381194	NM_001162922	ENSMUSG00000078861	Zfp931	2810021G02Rik	zinc finger protein 931	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-96635663-2	chr15	96635563	96635763	+	617.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166458, intron 1 of 15)	B2_Mm2|SINE|B2	6299.0	NM_134086	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64380513-2	chr5	64380413	64380613	+	880.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	87429.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-143154898-2	chr7	143154798	143154998	+	939.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008434, intron 2 of 15)	intron (NM_008434, intron 2 of 15)	47644.0	NM_008434	16535.0	Mm.439769	NM_008434	ENSMUSG00000009545	Kcnq1	AW559127|KVLQT1|Kcna9	potassium voltage-gated channel, subfamily Q, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100620284-2	chr11	100620184	100620384	+	608.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019795)	promoter-TSS (NM_019795)	-116.0	NM_019795	56354.0	Mm.402409	NM_019795	ENSMUSG00000014195	Dnajc7	2010003F24Rik|2010004G07Rik|CCRP|Ttc2|mDj11|mTpr2	DnaJ heat shock protein family (Hsp40) member C7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-32174336-4	chr14	32174243	32174443	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033988, intron 6 of 9)	intron (NM_001033988, intron 6 of 9)	8554.0	NM_019744	27057.0	Mm.371598	NM_019744	ENSMUSG00000056234	Ncoa4	ARA70|Rfg	nuclear receptor coactivator 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-103048889-3	chr14	103048780	103048980	+	913.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008392, intron 1 of 4)	intron (NM_008392, intron 1 of 4)	1868.0	NM_008392	16365.0	Mm.4662	NM_008392	ENSMUSG00000022126	Acod1	AI323667|CAD|Irg1	aconitate decarboxylase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-170221129-4	chr2	170221034	170221234	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-78459.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-16114952-3	chr9	16114849	16115049	+	819.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080814, intron 2 of 24)	intron (NM_001080814, intron 2 of 24)	-240393.0	NM_145712	244701.0	Mm.222631	NM_145712	ENSMUSG00000050901	Mtnr1b	Mel-1B-R|Mel1b|Mt2	melatonin receptor 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132805612-6	chr4	132805584	132805784	+	973.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR42-int|LTR|ERVK	-9320.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-67241851-2	chr7	67241751	67241951	+	601.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291195, intron 8 of 10)	intron (NM_001291195, intron 8 of 10)	19235.0	NM_001191051	75099.0	Mm.121691	NM_175215	ENSMUSG00000043831	Lysmd4	4930506D23Rik	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-107980135-1	chr5	107980035	107980235	+	798.400024	f0_balb.idr	intron (NM_026062, intron 1 of 4)	L1MB2|LINE|L1	6942.0	NM_026062	67266.0	Mm.277897	NM_026062	ENSMUSG00000029270	Fam69a	2900024C23Rik|AI315274	family with sequence similarity 69, member A	protein-coding	-0.820095337968538	-0.810992159820244	-0.814206172322431	-0.656770695015105	-0.265493124171896	-0.808275858600872	-0.813570452351274	-0.654164138467236	2.09884761037068	0.455927072897513	1
Merged-chr4-136147043-4	chr4	136146927	136147127	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3205.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31761924-2	chr14	31761824	31762024	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001024604, intron 3 of 27)	ORR1D2|LTR|ERVL-MaLR	68491.0	NM_001024604	105522.0	Mm.37660	NM_001024604	ENSMUSG00000014496	Ankrd28	AI465466|AI604979|E430019N21Rik|mKIAA0379	ankyrin repeat domain 28	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-95694740-2	chr9	95694640	95694840	+	734.833374	f1_balb.idr|f1_c57bl6.idr	exon (NM_029620, exon 8 of 9)	exon (NM_029620, exon 8 of 9)	55618.0	NM_001311123	22063.0	Mm.149633	NM_011643	ENSMUSG00000032839	Trpc1	Mtrp1|Trp1|Trrp1	transient receptor potential cation channel, subfamily C, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-52885114-6	chr2	52884997	52885197	+	869.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	27229.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25759476-2	chr7	25759376	25759576	+	547.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009465, intron 19 of 19)	MLT1F1|LTR|ERVL-MaLR	-4717.0	NM_178089	232989.0	Mm.254223	NM_144922	ENSMUSG00000040725	Hnrnpul1	E130317O14Rik|E1B-AP5|E1BAP5|Hnrnpul|Hnrpul1	heterogeneous nuclear ribonucleoprotein U-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-43994756-4	chr10	43994671	43994871	+	846.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172393, intron 2 of 19)	intron (NM_172393, intron 2 of 19)	10075.0	NM_172393	11630.0	Mm.292082	NM_172393	ENSMUSG00000019866	Crybg1	AI462491|AI463325|Aim1	crystallin beta-gamma domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-95143721-2	chr10	95143621	95143821	+	653.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_131146, intron 2 of 3)	(CAGA)n|Simple_repeat|Simple_repeat	2104.0	NR_131146	628062.0		NR_131146	ENSMUSG00000112481	Gm29684	-	predicted gene, 29684	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-125517985-3	chr8	125517894	125518094	+	778.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357372, intron 2 of 21)	RSINE1|SINE|B4	-25161.0	NM_001081337	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-8660006-2	chr8	8659906	8660106	+	614.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010111, intron 1 of 4)	CpG	767.0	NM_010111	13642.0	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-88204460-3	chr10	88204366	88204566	+	711.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026070, intron 2 of 6)	MERVL_2A-int|LTR|ERVL	3369.0	NM_027487	67282.0	Mm.208465	NM_026070	ENSMUSG00000020056	Washc3	2900091E11Rik|5730495F03Rik|Ccdc53	WASH complex subunit 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95682926-2	chr3	95682806	95683006	+	569.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301705, intron 6 of 17)	RSINE1|SINE|B4	5011.0	NM_144899	229595.0	Mm.490574	NM_144899	ENSMUSG00000015850	Adamtsl4	ADAMTSL-4|Tsrc1	ADAMTS-like 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-4621206-1	chr10	4621106	4621306	+	703.0	f0_balb.idr	intron (NM_007956, intron 1 of 8)	intron (NM_007956, intron 1 of 8)	9217.0	NM_007956	13982.0	Mm.9213	NM_007956	ENSMUSG00000019768	Esr1	ER|ER-alpha|ERa|ERalpha|ESR|Estr|Estra|Nr3a1	estrogen receptor 1 (alpha)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-119397311-2	chr6	119397211	119397411	+	806.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_197985, intron 1 of 7)	intron (NM_197985, intron 1 of 7)	-8577.0	NM_001355692	68465.0	Mm.291826	NM_197985	ENSMUSG00000030168	Adipor2	1110001I14Rik|ADCR2|AI115388|AW554121|D6Ucla1e|Paqr2	adiponectin receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-77753985-2	chr9	77753885	77754085	+	801.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010295)	promoter-TSS (NM_010295)	-550.0	NR_151778	14629.0	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-134828092-3	chr4	134827962	134828162	+	773.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001355501, exon 4 of 9)	exon (NM_001355501, exon 4 of 9)	25283.0	NM_001355501	66146.0	Mm.99793	NM_025382	ENSMUSG00000028826	Tmem57	1110007C24Rik|9230118A01Rik|AI317300|AI606104|C61|Maco1	transmembrane protein 57	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26468627-2	chr17	26468533	26468733	+	736.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39839.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139704262-2	chr5	139704162	139704362	+	666.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC-int|LTR|ERVL-MaLR	32071.0	NM_174850	231830.0	Mm.240510	NM_174850	ENSMUSG00000036718	Micall2	A930021H16Rik|JRAB|MICAL-L2|mFLJ00139	MICAL-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135935028-4	chr5	135934935	135935135	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018871)	promoter-TSS (NM_018871)	-394.0	NM_018871	22628.0	Mm.233813	NM_018871	ENSMUSG00000051391	Ywhag	14-3-3gamma|D7Bwg1348e	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-58918803-3	chr19	58918698	58918898	+	849.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001327998, intron 2 of 12)	intron (NM_001327998, intron 2 of 12)	-7039.0	NR_037247	100526480.0		NR_037247	ENSMUSG00000092813	Mir3086	mir-3086|mmu-mir-3086	microRNA 3086	ncRNA	2.30234213127887	2.67373454133769	2.05833418099635	2.12494716348596	2.03480458478493	2.14396577083222	2.07406677095859	1.29268993984831	-0.972345710337201	0.298464250899535	0.800257675359925
Merged-chr7-100436473-2	chr7	100436373	100436573	+	590.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001017985, intron 24 of 32)	B2_Mm1a|SINE|B2	-36518.0	NM_009464	22229.0	Mm.6254	NM_009464	ENSMUSG00000032942	Ucp3	AI645527|Slc25a9|UCP-3	uncoupling protein 3 (mitochondrial, proton carrier)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-71813009-3	chr2	71812912	71813112	+	654.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008397, intron 1 of 25)	intron (NM_008397, intron 1 of 25)	26073.0	NM_001277970	16403.0	Mm.225096	NM_008397	ENSMUSG00000027111	Itga6	5033401O05Rik|AI115430|Cd49f|VLA-6	integrin alpha 6	protein-coding	0.558103135546469	0.585515929577829	1.16601337861051	1.31310686439903	1.06321111795779	0.791543976158808	0.923905773098135	0.74480184536191	-0.366808653279908	0.812096182000211	1
Merged-chr3-142560044-1	chr3	142559944	142560144	+	1000.0	f0_c57.idr	promoter-TSS (NM_018734)	promoter-TSS (NM_018734)	0.0	NM_001289492	55932.0	Mm.439718	NM_018734	ENSMUSG00000028268	Gbp3	AW228655|GBP-3|GBP-4|Gbp4	guanylate binding protein 3	protein-coding	3.60509446299048	2.91228186832629	3.22814700127177	2.29869383573915	3.15941727733358	2.47233714241252	3.41743438329771	3.52231428193016	0.169113600961721	0.798105791052837	0.998431161219273
Merged-chr13-59002994-2	chr13	59002894	59003094	+	766.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025074, intron 13 of 17)	intron (NM_001025074, intron 13 of 17)	195297.0	NM_001025074	18212.0	Mm.130054	NM_008745	ENSMUSG00000055254	Ntrk2	GP145-TrkB/GP95-TrkB|Tkrb|trk-B|trkB	neurotrophic tyrosine kinase, receptor, type 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-55945335-4	chr17	55945233	55945433	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146249)	promoter-TSS (NM_146249)	-74.0	NM_146249	240120.0	Mm.441018	NM_146249	ENSMUSG00000062101	Zfp119b	-	zinc finger protein 119b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-102227023-2	chr4	102226923	102227123	+	885.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27719.0	NM_001177983	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-77908476-2	chr10	77908376	77908576	+	702.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_138301, exon 34 of 34)	3' UTR (NM_138301, exon 34 of 34)	-5940.0	NM_145152	237387.0	Mm.133301	NM_145152	ENSMUSG00000051652	Lrrc3	1300011L04Rik|C21orf102	leucine rich repeat containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-11407573-4	chr15	11407458	11407658	+	947.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7900.0	NM_033074	110960.0	Mm.286061	NM_033074	ENSMUSG00000022241	Tars	D15Wsu59e|ThrRS	threonyl-tRNA synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70498441-2	chr11	70498341	70498541	+	781.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5b|LINE|L1	-6833.0	NM_029360	75604.0	Mm.24400	NM_029360	ENSMUSG00000018919	Tm4sf5	2010003F10Rik|AI323987	transmembrane 4 superfamily member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-47871905-2	chr8	47871805	47872005	+	733.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133791, intron 9 of 22)	intron (NM_133791, intron 9 of 22)	47423.0	NM_029383	75677.0	Mm.390033	NM_029383	ENSMUSG00000038064	Cldn22	2210404A22Rik|5330431C14Rik|9530051B05Rik	claudin 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-4041985-4	chr10	4041891	4042091	+	973.7083130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170785, intron 17 of 27)	intron (NM_001170785, intron 17 of 27)	68916.0	NM_172308	270685.0	Mm.184752	NM_172308	ENSMUSG00000040675	Mthfd1l	2410004L15Rik|AI647056|Fthfsdc1	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	protein-coding	1.9514328745655	1.90806362630957	1.72489486489248	1.04102018369674	1.80302145658959	1.30874061352568	1.45391860026943	1.55854110192233	-0.533827954926783	0.640842948943515	0.982599433509505
Merged-chr9-121641578-4	chr9	121641470	121641670	+	931.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026915)	promoter-TSS (NM_026915)	23.0	NM_026915	69032.0	Mm.33351	NM_026915	ENSMUSG00000032530	Lyzl4	1810009N24Rik|AI504271|Lyc4|Lyza	lysozyme-like 4	protein-coding	1.23553351983673	0.968288394942151	0.941810269549262	1.50115842458576	0.73512428122799	1.14541874562285	1.24425264129513	1.20309264908121	-0.405733650654495	0.765177025894766	0.998431161219273
Merged-chr8-70710139-1	chr8	70710039	70710239	+	795.0	f1_c57bl6.idr	Intergenic	Intergenic	-8404.0	NM_001195253	100502950.0	Mm.52981	NM_001195253	ENSMUSG00000095026	Gm3336	100041434|2410018E23Rik	predicted gene 3336	protein-coding	-0.646606447435454	-0.298845315112308	-0.640284988408006	-0.642668974327521	-0.189092486636139	-0.636480018500976	-0.467721652555126	-0.642253151538074	1.03605953388095	0.706637245984649	1
Merged-chr13-106639187-4	chr13	106639091	106639291	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	297767.0	NM_001360897	76582.0	Mm.132208	NM_029665	ENSMUSG00000042590	Ipo11	1700081H05Rik|2510001A17Rik|AI314624|AW555235|E330021B14Rik|Ranbp11	importin 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-146512189-4	chr2	146512082	146512282	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033348)	promoter-TSS (NM_001033348)	-178.0	NM_001033348	241694.0	Mm.222310	NM_001033348	ENSMUSG00000037110	Ralgapa2	A230067G21Rik|AS250|BC053994|RGC2|pp250	Ral GTPase activating protein, alpha subunit 2 (catalytic)	protein-coding	8.05755435718212	8.2827438985661	8.25537180940703	8.28237564768445	8.2528668166835	8.39643709037497	7.85531734866031	8.00975359117922	-0.0797310343977159	0.560837902066408	0.960350977191929
Merged-chr13-63568033-4	chr13	63567916	63568116	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001328514, intron 1 of 23)	CpG	-2281.0	NM_008957	19206.0	Mm.228798	NM_008957	ENSMUSG00000021466	Ptch1	A230106A15Rik|Ptc|Ptc1|Ptch|mes|wig	patched 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-45961970-4	chr9	45961849	45962049	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6700.0	NM_172257	214597.0	Mm.379345	NM_172257	ENSMUSG00000034908	Sidt2	B930096O19|BC023957|CGI-40	SID1 transmembrane family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3423393-2	chr12	3423293	3423493	+	570.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_030694, intron 1 of 2)	Lx8|LINE|L1	3354.0	NR_030694	100043040.0	Mm.415417	NR_030694	ENSMUSG00000071456	1110002L01Rik	-	RIKEN cDNA 1110002L01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-21831183-5	chr14	21831109	21831309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011695)	promoter-TSS (NM_011695)	-352.0	NM_011695	22334.0	Mm.262327	NM_011695	ENSMUSG00000021771	Vdac2	Vdac6|mVDAC2|mVDAC6	voltage-dependent anion channel 2	protein-coding	4.58327105891366	4.58196254176928	3.65159897508791	4.90995975504561	4.23877198099362	4.71828510904299	4.71541974621736	5.1505071497751	0.290141714880687	0.472759366844343	0.926125823511231
Merged-chr1-80665922-4	chr1	80665814	80666014	+	989.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285927)	promoter-TSS (NM_001285927)	-562.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141655987-4	chr4	141655891	141656091	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347237, intron 1 of 18)	intron (NM_001347237, intron 1 of 18)	8124.0	NM_001347237	69582.0	Mm.33220	NM_001033150	ENSMUSG00000028917	Plekhm2	2310034J19Rik|AI854247|mKIAA0842	pleckstrin homology domain containing, family M (with RUN domain) member 2	protein-coding	5.82085389090775	5.8847632509504	5.51749198289353	5.9600551844209	5.73725740963082	4.90252085900503	3.78222279879107	5.61313074417227	-0.677485333566416	0.0580584306210286	0.356207967075077
Merged-chr11-22952857-4	chr11	22952770	22952970	+	808.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361661, intron 2 of 2)	intron (NM_001361661, intron 2 of 2)	-19135.0	NM_011663	22183.0	Mm.29542	NM_011663	ENSMUSG00000044068	Zrsr1	D11Ncvs75|Irlgs2|SP2|U2af1-rs1|U2afbp-rs	zinc finger (CCCH type), RNA binding motif and serine/arginine rich 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-128135877-4	chr6	128135743	128135943	+	995.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175414, intron 1 of 8)	intron (NM_175414, intron 1 of 8)	7735.0	NM_175414	109246.0	Mm.21814	NM_175414	ENSMUSG00000030352	Tspan9	6720474K14Rik|9430079M16Rik|AU018597|Tspan-9	tetraspanin 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97115963-2	chr11	97115863	97116063	+	583.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019507)	promoter-TSS (NM_019507)	-632.0	NM_019507	57765.0	Mm.94519	NM_019507	ENSMUSG00000001444	Tbx21	TBT1|Tbet|Tblym	T-box 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-89643967-4	chr6	89643865	89644065	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001178058)	promoter-TSS (NM_001178058)	-23.0	NM_001178060	232223.0	Mm.229332	NM_153162	ENSMUSG00000000811	Txnrd3	AI196535|TGR|TR2	thioredoxin reductase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-7300104-4	chr7	7299984	7300184	+	891.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011334)	promoter-TSS (NM_011334)	-527.0	NM_011334	12727.0	Mm.297883	NM_011334	ENSMUSG00000000605	Clcn4	Clc4-2|Clcn4-2|clC-4	chloride channel, voltage-sensitive 4	protein-coding	-1.84335282827126	-1.8131721693203	-1.82229904969614	-1.82979614098203	-1.69762670694229	-1.6675868413945	-1.82023292403457	-1.82845416522631	1.43472749533542	0.684151459466795	1
Merged-chr3-152114989-3	chr3	152114887	152115087	+	981.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016867, intron 3 of 5)	intron (NM_016867, intron 3 of 5)	50913.0	NM_016867	54120.0	Mm.97	NM_016867	ENSMUSG00000039131	Gipc2	2200002N01Rik|AU021850|Semcap2	GIPC PDZ domain containing family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75584880-3	chr11	75584785	75584985	+	741.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3194.0	NM_008850	18738.0	Mm.3128	NM_008850	ENSMUSG00000017781	Pitpna	Pitpn|vb|vibrator	phosphatidylinositol transfer protein, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78851962-4	chr15	78851878	78852078	+	937.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025622, intron 2 of 3)	intron (NM_025622, intron 2 of 3)	3551.0	NM_025622	107753.0	Mm.390793	NM_025622	ENSMUSG00000043501	Lgals2	2200008F12Rik|AI324147	lectin, galactose-binding, soluble 2	protein-coding	4.62134979304825	4.41739023664498	3.69641983768979	4.35959732968834	3.58164830465846	3.21657331994545	3.6400304821596	3.96352497940151	-0.951715845179213	0.0417946142896852	0.292676137498624
Merged-chr2-5138108-2	chr2	5138008	5138208	+	752.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_028804, exon 1 of 3)	exon (NM_028804, exon 1 of 3)	332.0	NM_028804	74186.0	Mm.274715	NM_028804	ENSMUSG00000026676	Ccdc3	2310045O21Rik	coiled-coil domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-31468753-2	chr5	31468653	31468853	+	578.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360001, intron 6 of 12)	intron (NM_001360001, intron 6 of 12)	16317.0	NM_001360000	269639.0	Mm.259127	NM_172993	ENSMUSG00000062761	Zfp512	2500002M11Rik|AI450173|D230008H22|Znf512	zinc finger protein 512	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101096571-2	chr11	101096471	101096671	+	773.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_155070, exon 11 of 11)	non-coding (NR_155070, exon 11 of 11)	-1136.0	NM_008949	19183.0	Mm.18344	NM_008949	ENSMUSG00000019303	Psmc3ip	C79099|GT198|HOP2|Tbpip	proteasome (prosome, macropain) 26S subunit, ATPase 3, interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-61866507-3	chr11	61866415	61866615	+	876.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11423.0	NM_013881	29869.0	Mm.162025	NM_013881	ENSMUSG00000004798	Ulk2	A830085I22Rik|AU015340|Unc51.2|mKIAA0623	unc-51 like kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-17893749-2	chr5	17893649	17893849	+	769.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4790.0	NM_001159558	12491.0	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 molecule	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45520320-2	chr7	45520220	45520420	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001045555, intron 9 of 13)	B2_Mm1a|SINE|B2	5718.0	NM_001290998	56734.0	Mm.439742	NM_008807	ENSMUSG00000023467	Tulp2	Pdet	tubby-like protein 2	protein-coding	-0.133577490940407	-0.276312777815883	-0.443417027848361	-0.445501575855081	-0.126459351319749	-0.27234417285222	-0.442817386580239	-0.445138873604566	0.040964281577343	0.986726794986629	1
Merged-chr3-27187958-2	chr3	27187858	27188058	+	804.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 1 of 4)	intron (NM_178772, intron 1 of 4)	4954.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124304915-3	chr6	124304925	124305125	+	723.488892	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170395, intron 1 of 16)	intron (NM_001170395, intron 1 of 16)	374.0	NM_053094	93671.0	Mm.37426	NM_053094	ENSMUSG00000008845	Cd163	CD163v2|CD163v3	CD163 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21126525-2	chr9	21126425	21126625	+	726.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205312, intron 3 of 24)	intron (NM_001205312, intron 3 of 24)	4750.0	NM_018793	54721.0	Mm.20249	NM_018793	ENSMUSG00000032175	Tyk2	JTK1	tyrosine kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-84820856-2	chr3	84820756	84820956	+	755.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177773, intron 1 of 13)	ORR1D1|LTR|ERVL-MaLR	5279.0	NM_001177773	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-20997650-2	chr9	20997550	20997750	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-5087.0	NM_023167	66163.0	Mm.427576	NM_023167	ENSMUSG00000003299	Mrpl4	1110017G11Rik	mitochondrial ribosomal protein L4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-34843757-2	chr11	34843657	34843857	+	629.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10116.0	NM_027411	70385.0	Mm.194368	NM_027411	ENSMUSG00000069910	Spdl1	1700018I02Rik|2600001J17Rik|2810049B11Rik|AA409762|Ccdc99	spindle apparatus coiled-coil protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-40953001-4	chr13	40952906	40953106	+	905.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133219, intron 1 of 2)	intron (NM_133219, intron 1 of 2)	35372.0	NM_133219	14538.0	Mm.314757	NM_008105	ENSMUSG00000021360	Gcnt2	5330430K10Rik|IGnT|IGnTA|IGnTB|IGnTC	glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-90465407-5	chr3	90465165	90465365	+	958.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008727, exon 1 of 22)	exon (NM_008727, exon 1 of 22)	601.0	NM_008727	18160.0	Mm.4627	NM_008727	ENSMUSG00000027931	Npr1	AI893888|GC-A|NPR-A|NPRA|Pndr	natriuretic peptide receptor 1	protein-coding	1.80436827972709	0.965470823238078	1.64948884463089	2.15276594993926	1.73182707641908	0.969540238963277	0.951217361460564	1.60817612079884	-1.10077606537509	0.398714779969658	0.88490194784979
Merged-chr12-36042548-4	chr12	36042448	36042648	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025359)	promoter-TSS (NM_025359)	-70.0	NM_025359	66109.0	Mm.254663	NM_025359	ENSMUSG00000020577	Tspan13	1100001I23Rik|NET-6|Tm4sf13	tetraspanin 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-70826427-2	chr12	70826327	70826527	+	886.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_028127, intron 1 of 13)	intron (NM_028127, intron 1 of 13)	913.0	NM_028127	319710.0	Mm.2962	NM_028127	ENSMUSG00000048285	Frmd6	2610019M19Rik|4930488L10Rik|AW212977|Willin	FERM domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-75192070-4	chr1	75191970	75192170	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026187)	promoter-TSS (NM_026187)	-60.0	NR_109938	245860.0	Mm.238266	NM_001003917	ENSMUSG00000033124	Atg9a	AU019532|Apg9l1|Atg9|Atg9l1	autophagy related 9A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81433061-4	chr10	81432952	81433152	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5879.0	NM_026756	18029.0	Mm.426936	NM_008688	ENSMUSG00000055053	Nfic	1110019L22Rik|1500041O16Rik|AA589446|AI746521|NF1-C	nuclear factor I/C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-99188639-3	chr6	99188533	99188733	+	671.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001197321, intron 2 of 17)	intron (NM_001197321, intron 2 of 17)	77882.0	NM_001197321	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-37531809-4	chr1	37531727	37531927	+	653.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173870, intron 2 of 15)	L1MB8|LINE|L1	4577.0	NM_001290801	269181.0	Mm.25861	NM_173870	ENSMUSG00000026110	Mgat4a	9530018I07Rik|GnT-IVa|glcNAc-T-IVa	mannoside acetylglucosaminyltransferase 4, isoenzyme A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-99185903-2	chr4	99185805	99186005	+	739.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-8029.0	NM_175029	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	0.360705800611443	0.620527719175189	-0.0154390069187723	-0.0199231447915089	-0.0262772263237046	0.631893836322262	-0.0141589121235714	-0.0191390614541224	-0.577852670584304	0.796645186275035	1
Merged-chr6-124273395-4	chr6	124273289	124273489	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31262.0	NM_001170395	93671.0	Mm.37426	NM_053094	ENSMUSG00000008845	Cd163	CD163v2|CD163v3	CD163 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-94418176-4	chr8	94418051	94418251	+	726.229187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16952.0	NR_015514	320377.0	Mm.486022	NR_015514		9330175E14Rik	A630085K21	RIKEN cDNA 9330175E14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-17953489-3	chr11	17953389	17953589	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_131916)	promoter-TSS (NR_131916)	386.0	NM_026576	68145.0	Mm.178684	NM_026576	ENSMUSG00000016984	Etaa1	5730466H23Rik|AA672646	Ewing tumor-associated antigen 1	protein-coding	5.12522734912016	5.21372769179771	5.76422578587358	4.47050805769665	4.70605411656143	4.49253862429735	5.09474171706266	4.08354437825758	-0.688298651489853	0.0696149906637962	0.396474995878589
Merged-chr4-117484876-1	chr4	117484776	117484976	+	592.0	f1_c57bl6.idr	intron (NM_025739, intron 2 of 14)	CpG	12176.0	NM_025739	66743.0	Mm.318331	NM_025739	ENSMUSG00000028677	Rnf220	4732477A13|4931406I20Rik|5730503K05Rik|AV302541	ring finger protein 220	protein-coding	0.726654171217128	0.798462808101532	0.157700523260017	0.152537426302431	0.822296407836434	0.165867701706431	0.159173449776327	0.153440627844512	-0.787518288565959	0.710822911972126	1
Merged-chr18-23811009-2	chr18	23810909	23811109	+	906.2999880000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_153058, intron 1 of 6)	intron (NM_153058, intron 1 of 6)	7039.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44589333-2	chr7	44589231	44589431	+	670.833374	f0_balb.idr|f0_c57.idr	Intergenic	CpG	-1555.0	NM_008422	16504.0	Mm.40312	NM_008422	ENSMUSG00000062785	Kcnc3	KShIIID|Kcr2-3|Kv3.3	potassium voltage gated channel, Shaw-related subfamily, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-62005083-4	chr11	62004993	62005193	+	990.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310526, intron 1 of 7)	intron (NM_001310526, intron 1 of 7)	48330.0	NM_001310526	432572.0	Mm.438022	NM_001029936	ENSMUSG00000042331	Specc1	2810012G08Rik|B230396K10Rik|Cytsb	sperm antigen with calponin homology and coiled-coil domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-47235025-4	chr4	47234936	47235136	+	941.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009928, intron 2 of 39)	intron (NM_009928, intron 2 of 39)	27024.0	NM_009928	12819.0	Mm.233547	NM_009928	ENSMUSG00000028339	Col15a1	-	collagen, type XV, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-68337447-4	chr18	68337350	68337550	+	966.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013596)	promoter-TSS (NM_013596)	-153.0	NM_013596	17203.0	Mm.8003	NM_013596	ENSMUSG00000007480	Mc5r	-	melanocortin 5 receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-101850278-4	chr13	101850186	101850386	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-82069.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-115546655-2	chr6	115546555	115546755	+	742.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_199033, intron 1 of 11)	intron (NM_199033, intron 1 of 11)	1951.0	NM_199033	381802.0	Mm.291208	NM_199033	ENSMUSG00000042389	Tsen2	AU067695	tRNA splicing endonuclease subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31608947-4	chr14	31608834	31609034	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019975, intron 16 of 16)	intron (NM_019975, intron 16 of 16)	-31551.0	NM_009937	382864.0	Mm.239821	NM_009937	ENSMUSG00000057606	Colq	A130034K24Rik	collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-89296655-3	chr2	89296560	89296760	+	716.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_146789, exon 1 of 1)	exon (NM_146789, exon 1 of 1)	608.0	NM_146789	258785.0	Mm.377689	NM_146789	ENSMUSG00000075094	Olfr1230	MOR237-1	olfactory receptor 1230	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-122939342-4	chr7	122939229	122939429	+	941.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31130.0	NR_045614	73951.0	Mm.389936	NR_045614		4930413G21Rik	-	RIKEN cDNA 4930413G21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191286648-2	chr1	191286548	191286748	+	874.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31470.0	NM_025424	66208.0	Mm.46444	NM_025424	ENSMUSG00000037499	Nenf	1110060M21Rik|SCIRP10|Spuf	neuron derived neurotrophic factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43483459-1	chr4	43483359	43483559	+	664.0	f1_balb.idr	intron (NM_019436, intron 1 of 4)	intron (NM_019436, intron 1 of 4)	250.0	NM_019436	54390.0	Mm.31775	NM_019436	ENSMUSG00000028460	Sit1	Sit	suppression inducing transmembrane adaptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-24884508-4	chr7	24884398	24884598	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360119)	promoter-TSS (NM_001360119)	-94.0	NM_001360128	20085.0	Mm.300281	NM_023133	ENSMUSG00000040952	Rps19	Dsk3	ribosomal protein S19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-55020217-2	chr12	55020123	55020323	+	699.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CAGAGA)n|Simple_repeat|Simple_repeat	-33887.0	NM_013815	217578.0	Mm.479583	NM_013815	ENSMUSG00000035021	Baz1a	Acf1|B930060C03|BC065123|Gtl5|Wcrf180|cbp146	bromodomain adjacent to zinc finger domain 1A	protein-coding	1.22454132807668	0.917646818208582	0.897251400799805	1.29229254942343	1.50946835327523	1.71877959242951	2.46280976723371	1.59588618208996	2.81208023729498	0.0251788537166158	0.210211403660207
Merged-chr5-3647197-4	chr5	3647092	3647292	+	861.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026033, intron 1 of 4)	intron (NM_026033, intron 1 of 4)	744.0	NM_026033	67210.0	Mm.178424	NM_026033	ENSMUSG00000007415	Gatad1	2310031E19Rik|2810047M21Rik|8430439A17Rik|9130430G15Rik|B330017N08Rik|Odag	GATA zinc finger domain containing 1	protein-coding	1.96354103381245	1.74498843962255	1.54413256349044	1.64831075314652	1.97960610820883	1.75692584919154	1.55418044269096	1.65586557396901	0.0383650070262718	0.969936030105021	0.998431161219273
Merged-chr17-31122655-2	chr17	31122555	31122755	+	637.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6956.0	NM_011575	21786.0	Mm.4641	NM_011575	ENSMUSG00000024029	Tff3	ITF|mITF	trefoil factor 3, intestinal	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-58331587-2	chr11	58331480	58331680	+	613.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001161338, exon 2 of 7)	5' UTR (NM_001161338, exon 2 of 7)	790.0	NM_001308168	79566.0	Mm.290534	NM_024480	ENSMUSG00000013646	Sh3bp5l	2310074E09Rik|BC003251|mKIAA1720	SH3 binding domain protein 5 like	protein-coding	-0.0837642819007808	-0.422210763581045	-0.425668609502204	0.0703309376859911	-0.179343628033161	-0.421428665978418	-0.424907607924259	-0.427860347463684	-1.73234794232856	0.506098850819935	1
Merged-chr4-3069043-2	chr4	3068943	3069143	+	796.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-103040.0	NM_001167534	100312470.0	Mm.480297	NM_001167534	ENSMUSG00000115072	Vmn1r2	Gm11776	vomeronasal 1 receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128731614-4	chr2	128731493	128731693	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 2 of 18)	intron (NM_008587, intron 2 of 18)	32678.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-99198069-4	chr10	99197973	99198173	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_027740)	TTS (NM_027740)	-65158.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-93755318-4	chr13	93755219	93755419	+	957.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MRLTR33|LTR|ERVK	-16360.0	NM_009712	11881.0	Mm.300178	NM_009712	ENSMUSG00000042082	Arsb	1110007C02Rik|AI480648|As-1|As-1r|As-1s|As-1t|As1|As1-r|As1-s|As1-t|Asr-1|Ast-1	arylsulfatase B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-102104700-3	chr4	102104600	102104800	+	902.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	117860.0	NM_001085520	381536.0	Mm.297685	NM_001085520	ENSMUSG00000078625	Gm12789	-	predicted gene 12789	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-116037434-3	chr6	116037343	116037543	+	822.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177412, intron 4 of 5)	intron (NM_177412, intron 4 of 5)	-42438.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-100642645-4	chr13	100642543	100642743	+	993.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001283011, intron 4 of 17)	B2_Mm2|SINE|B2	8418.0	NM_001044371	19356.0	Mm.248489	NM_011233	ENSMUSG00000021635	Rad17	MmRad24	RAD17 checkpoint clamp loader component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-87701968-2	chr16	87701868	87702068	+	858.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_007520, intron 1 of 4)	(TCTG)n|Simple_repeat|Simple_repeat	3014.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-9790757-3	chr4	9790654	9790854	+	922.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030693, intron 3 of 3)	intron (NR_030693, intron 3 of 3)	20169.0	NR_030693	320152.0	Mm.159946	NR_030693		4930412C18Rik	5730591J02Rik	RIKEN cDNA 4930412C18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-14669034-3	chr18	14668917	14669117	+	737.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009280, intron 3 of 10)	intron (NM_009280, intron 3 of 10)	13897.0	NM_001161369	268996.0	Mm.31761	NM_009280	ENSMUSG00000037013	Ss18	D130059H17|Ssxt|Syt	SS18, nBAF chromatin remodeling complex subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-87472226-2	chr11	87472126	87472326	+	723.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199293, intron 2 of 30)	L1Md_A|LINE|L1	44635.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25262465-2	chr7	25262365	25262565	+	657.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5234.0	NM_001302811	71722.0	Mm.28833	NM_027882	ENSMUSG00000005442	Cic	1200010B10Rik|mKIAA0306	capicua transcriptional repressor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25599847-4	chr7	25599763	25599963	+	667.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16029.0	NM_001039243	632778.0	Mm.423112	NM_001039243	ENSMUSG00000074261	Erich4	EG632778|Gm7092|Kseg1	glutamate rich 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-60279491-2	chr10	60279391	60279591	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011179, intron 1 of 14)	intron (NM_011179, intron 1 of 14)	1863.0	NM_001146121	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84195263-2	chr8	84195186	84195386	+	918.208374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-13232.0	NR_029740	387216.0		NR_029740	ENSMUSG00000065611	Mir23a	Mirn23a|mir-23a|mmu-mir-23a	microRNA 23a	ncRNA	0.297088780396364	0.510900631820655	0.488157685957712	0.935367725687605	0.298387763286857	0.516001340726164	0.493191002959911	0.943276306917756	0.0324391852357719	0.985077470473143	1
Merged-chr4-43497537-2	chr4	43497437	43497637	+	740.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013377, intron 9 of 11)	intron (NM_001013377, intron 9 of 11)	4172.0	NM_001037913	622404.0	Mm.289109	NM_001037913	ENSMUSG00000028461	Ccdc107	-	coiled-coil domain containing 107	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120041938-4	chr11	120041867	120042067	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001198787)	promoter-TSS (NM_001198787)	-186.0	NM_001198787	11302.0	Mm.6826	NM_007377	ENSMUSG00000025375	Aatk	AATYK|aatyk1|mKIAA0641	apoptosis-associated tyrosine kinase	protein-coding	5.04643920724926	3.95395703353241	5.49103391478957	4.92582766092442	5.02549901701122	4.90498062399019	5.7920425572104	5.24479458162917	0.378402226678881	0.304746368788546	0.806210138838192
Merged-chr10-93257442-3	chr10	93257344	93257544	+	874.5166630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001282967, intron 2 of 3)	intron (NM_001282967, intron 2 of 3)	53715.0	NM_001322268	13713.0	Mm.4454	NM_013508	ENSMUSG00000008398	Elk3	D430049E23Rik|Erp|Etrp|Net|Sap-2	ELK3, member of ETS oncogene family	protein-coding	2.2429105391011	1.49322828891069	2.88424976861118	3.18095232462191	2.83952907628534	1.79300325774771	2.58957802117617	3.31963516923038	0.273167423737714	0.751946071836289	0.998431161219273
Merged-chr9-57435188-2	chr9	57435088	57435288	+	736.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_152146, intron 2 of 5)	intron (NR_152146, intron 2 of 5)	4548.0	NM_001357913	66812.0	Mm.250508	NM_176831	ENSMUSG00000063849	Ppcdc	1810057I13Rik|8430432M10Rik	phosphopantothenoylcysteine decarboxylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-172441384-4	chr2	172441274	172441474	+	893.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025542, intron 1 of 8)	intron (NM_025542, intron 1 of 8)	796.0	NM_025542	66404.0	Mm.25157	NM_025542	ENSMUSG00000027502	Rtf2	1700067C04Rik|2410001C21Rik|5730427M17Rik|AA589417|Rtfdc1	replication termination factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-59240802-3	chr2	59240712	59240912	+	946.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 2 of 20)	intron (NM_175464, intron 2 of 20)	79962.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-61469700-2	chr10	61469600	61469800	+	570.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-6133.0	NM_153542	216011.0	Mm.136116	NM_153542	ENSMUSG00000037151	Lrrc20	BC036304	leucine rich repeat containing 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-4616454-4	chr2	4616341	4616541	+	795.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	35694.0	NM_026045	67229.0	Mm.38529	NM_026045	ENSMUSG00000039449	Prpf18	2810441A10Rik	pre-mRNA processing factor 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-61643885-4	chr18	61643785	61643985	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045420, intron 1 of 2)	intron (NR_045420, intron 1 of 2)	4009.0	NR_029557	387163.0		NR_029557	ENSMUSG00000065592	Mir145a	Mir145|Mirn145|mir-145a|mmu-mir-145|mmu-mir-145a	microRNA 145a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-151620827-4	chr1	151620719	151620919	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022018, intron 1 of 13)	intron (NM_022018, intron 1 of 13)	49446.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114903302-6	chr11	114903225	114903425	+	968.611084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13284.0	NM_170758	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-54749512-4	chr14	54749427	54749627	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016972, intron 3 of 10)	intron (NM_016972, intron 3 of 10)	32359.0	NM_016972	50934.0	Mm.276831	NM_016972	ENSMUSG00000022180	Slc7a8	AA408822|LAT2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	protein-coding	-0.499940950918087	-0.487518524828365	0.0891561271406926	-0.494726023626598	-0.499164980458282	-0.486601867615524	0.100277611126392	-0.494177430718284	0.0410194320726077	0.98816738256539	1
Merged-chr13-51323284-4	chr13	51323181	51323381	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT-int|LTR|ERVL-MaLR	-85337.0	NM_010101	13610.0	Mm.136736	NM_010101	ENSMUSG00000067586	S1pr3	AI132464|Edg3|Lpb3|S1p3	sphingosine-1-phosphate receptor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-24842088-3	chr5	24842008	24842208	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053075, intron 1 of 7)	CpG	253.0	NM_053075	19744.0	Mm.319175	NM_053075	ENSMUSG00000028945	Rheb	Rheb1	Ras homolog enriched in brain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67715773-3	chr10	67715676	67715876	+	847.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-143817.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126376761-2	chr7	126376661	126376861	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045537, intron 1 of 12)	intron (NR_045537, intron 1 of 12)	1173.0	NM_023712	73658.0	Mm.11112	NM_023712	ENSMUSG00000030741	Spns1	2210013K02Rik|Spin1|Spinl	spinster homolog 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-189007120-2	chr1	189007020	189007220	+	736.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_153196, intron 1 of 17)	intron (NR_153196, intron 1 of 17)	720.0	NM_001359577	226823.0	Mm.209880	NM_172650	ENSMUSG00000026608	Kctd3	4930438A20Rik|9330185B06|E330032J19Rik|NY-REN-45	potassium channel tetramerisation domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191255438-2	chr1	191255338	191255538	+	631.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	30984.0	NR_151547	100504360.0	Mm.16927	NM_001033188		D730003I15Rik	AU020850	RIKEN cDNA D730003I15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-119744505-2	chr7	119744405	119744605	+	684.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-16418.0	NM_212441	20216.0	Mm.334199	NM_016870	ENSMUSG00000030935	Acsm3	Sa|Sah	acyl-CoA synthetase medium-chain family member 3	protein-coding	-1.26550836321643	-1.23538490674683	-1.24673049817958	-1.25605010478787	-1.26497736998827	-0.580802564315158	-1.24416210496749	-1.25438189966081	2.74054745292391	0.426663645876262	1
Merged-chr11-51920826-2	chr11	51920726	51920926	+	715.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-46805.0	NM_029976	52626.0	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64378401-2	chr5	64378295	64378495	+	849.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	89547.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	0.945766156213549	0.897316495120433	0.397599012637873	0.392020507114798	0.657827171292947	0.406447034856512	0.580085594149248	1.03069368481721	0.0172538198709103	0.992087582125199	1
Merged-chr9-111064323-2	chr9	111064239	111064439	+	755.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-6821.0	NM_001302376	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	0.779770520877395	1.34994727418478	1.30106365901555	1.13036450831673	1.41068503134102	1.36080825655565	0.807325244486211	1.49137822623918	0.582580625856083	0.670309109549752	0.99359666617512
Merged-chr12-119357479-4	chr12	119357378	119357578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-85932.0	NM_001163136	238455.0	Mm.31376	NM_001163136	ENSMUSG00000041886	Macc1	4732474O15Rik|Gm267	metastasis associated in colon cancer 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-86806579-2	chr6	86806478	86806678	+	633.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12994.0	NM_013471	11746.0	Mm.259702	NM_013471	ENSMUSG00000029994	Anxa4	AI265406|AIV|AW106930|Anx4|Xanx-4	annexin A4	protein-coding	1.4318572886247	2.09096558706674	1.68867904734646	0.975906765908021	1.56465727419563	1.62129837342928	1.93241824847093	0.978502214372726	-0.138400717082123	0.909928206087081	0.998431161219273
Merged-chr17-28180919-4	chr17	28180779	28180979	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172617, intron 2 of 14)	intron (NM_172617, intron 2 of 14)	3461.0	NM_172617	224656.0	Mm.267359	NM_172617	ENSMUSG00000024220	Zfp523	2810027J07|BC025615|Znf76	zinc finger protein 523	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-109027300-3	chr3	109027207	109027407	+	986.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001163567, exon 1 of 11)	exon (NM_001163567, exon 1 of 11)	300.0	NM_001163567	329739.0	Mm.69013	NM_001163567	ENSMUSG00000040339	Fam102b	1600010D10Rik|B430201A12Rik	family with sequence similarity 102, member B	protein-coding	-0.956301058110193	-1.08048890858279	-0.5174261912062	-1.09930773882016	-1.10219358621719	-1.07801123589871	-1.08933406316978	-1.09895072249566	-2.74712229718365	0.3868203743293	1
Merged-chr17-88432088-2	chr17	88431988	88432188	+	721.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8616.0	NM_001355743	14236.0	Mm.112824	NM_180974	ENSMUSG00000034998	Foxn2	3230402J05Rik|6030465J18Rik|Fkh19|Foxn1|HTLF	forkhead box N2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44398783-2	chr7	44398683	44398883	+	662.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_016663, intron 9 of 10)	intron (NM_016663, intron 9 of 10)	14657.0	NM_016663	20981.0	Mm.4824	NM_016663	ENSMUSG00000030731	Syt3	AI385753|sytIII	synaptotagmin III	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-122580640-3	chr2	122580545	122580745	+	905.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30632.0	NM_025961	67092.0	Mm.29975	NM_025961	ENSMUSG00000027199	Gatm	1810003P21Rik|AI314789|AT	glycine amidinotransferase (L-arginine:glycine amidinotransferase)	protein-coding	2.12390302236723	0.891745968320181	1.10702057792627	0.857396651979272	2.01332122102818	1.68025117105685	0.876864448244643	1.67945326521735	0.725949192487817	0.596574302559295	0.971586575449917
Merged-chr9-124081607-2	chr9	124081507	124081707	+	639.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPEy-int|LTR|ERVK	-20576.0	NM_009915	12772.0	Mm.6272	NM_009915	ENSMUSG00000049103	Ccr2	Cc-ckr-2|Ccr2a|Ccr2b|Ckr2|Ckr2a|Ckr2b|Cmkbr2|mJe-r	chemokine (C-C motif) receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-46315472-4	chr2	46315390	46315590	+	891.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	618885.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72398660-2	chr6	72398560	72398760	+	685.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	-7993.0	NM_016794	22320.0	Mm.1838	NM_016794	ENSMUSG00000050732	Vamp8	AU041171|Edb|endobrevin	vesicle-associated membrane protein 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-30607908-4	chr14	30607805	30608005	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011103, intron 3 of 17)	intron (NM_011103, intron 3 of 17)	2405.0	NM_001310682	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	0.358840670450922	0.030386665139799	0.0258736590340959	0.41187442560053	0.366817426592572	0.0314077314751966	0.0268666928548457	0.417380277679181	0.0348560535760958	0.986867547413466	1
Merged-chr4-92631878-2	chr4	92631778	92631978	+	689.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3A|LINE|L1	-484657.0	NM_027034	69314.0	Mm.55891	NM_027034	ENSMUSG00000028533	Izumo3	1700011H22Rik	IZUMO family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-17679757-4	chr12	17679660	17679860	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-11049.0	NM_001361645	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83662457-4	chr11	83662383	83662583	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013652)	promoter-TSS (NM_013652)	-101.0	NM_013652	20303.0	Mm.244263	NM_013652	ENSMUSG00000018930	Ccl4	AT744.1|Act-2|MIP-1B|Mip1b|Scya4	chemokine (C-C motif) ligand 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-84095306-4	chr17	84095205	84095405	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M5|LINE|L1	16645.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-29491904-4	chr17	29491785	29491985	+	951.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008842, exon 4 of 6)	exon (NM_008842, exon 4 of 6)	840.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-117181707-2	chr4	117181607	117181807	+	856.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_134471, intron 1 of 19)	intron (NM_134471, intron 1 of 19)	917.0	NM_134471	73804.0	Mm.247651	NM_134471	ENSMUSG00000028678	Kif2c	4930402F02Rik|ESTM5|Knsl6|MCAK|X83316	kinesin family member 2C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-112267088-2	chr5	112266988	112267188	+	615.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001312893, intron 4 of 5)	intron (NM_001312893, intron 4 of 5)	-9603.0	NM_001326590	22022.0	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-55618992-1	chr1	55618892	55619092	+	566.0	f0_balb.idr	intron (NM_001114663, intron 1 of 5)	intron (NM_001114663, intron 1 of 5)	213046.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-83744244-1	chr8	83744144	83744344	+	859.0	f1_balb.idr	Intergenic	Intergenic	-2933.0	NM_001163031	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	-0.45913795644715	-0.681774200498687	-0.530196207308062	-0.6861167983264	-0.688746181271211	-0.508566650649416	-0.393741965553666	-0.685789448893151	0.307940166666315	0.906222037418735	1
Merged-chr8-24417404-2	chr8	24417304	24417504	+	576.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21542.0	NM_026931	69068.0	Mm.25775	NM_026931	ENSMUSG00000056313	Tcim	1110065B09Rik|1810011O10Rik|AW121743|AW321058	transcriptional and immune response regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-32187428-4	chr18	32187321	32187521	+	788.224976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011946, intron 1 of 16)	intron (NM_011946, intron 1 of 16)	24332.0	NM_011946	26405.0	Mm.211762	NM_011946	ENSMUSG00000024383	Map3k2	9630061B06Rik|AI585793|Mekk2|Mekk2b	mitogen-activated protein kinase kinase kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-88757702-3	chr4	88757602	88757802	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001243150)	promoter-TSS (NM_001243150)	-142.0	NM_001243150	100041062.0	Mm.489587	NM_001243150		Gm13286	-	predicted gene 13286	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-8897253-2	chr19	8897153	8897353	+	718.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008060)	promoter-TSS (NM_008060)	-804.0	NM_001293621	14376.0	Mm.3196	NM_008060	ENSMUSG00000071650	Ganab	AU042638|G2an|GluII|mKIAA0088	alpha glucosidase 2 alpha neutral subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-86706313-4	chr10	86706165	86706365	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011631)	promoter-TSS (NM_011631)	454.0	NM_001003939	103220.0	Mm.440762	NM_153595	ENSMUSG00000044937	Ttc41	AI449705|AU041509|Gnn	tetratricopeptide repeat domain 41	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-35114723-4	chr9	35114632	35114832	+	967.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009178, intron 1 of 10)	intron (NM_009178, intron 1 of 10)	-1996.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-50827786-4	chr11	50827683	50827883	+	858.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013922)	promoter-TSS (NM_013922)	-52.0	NM_013922	30944.0	Mm.103674	NM_013922	ENSMUSG00000044807	Zfp354c	5330421P20Rik|AJ18|AW743325|Kid3|Tcf17l2|Znf354c|mKIAA4218	zinc finger protein 354C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-73563346-2	chr7	73563246	73563446	+	800.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4951.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-96680485-1	chr9	96680385	96680585	+	625.0	f1_balb.idr	Intergenic	RSINE1|SINE|B4	38960.0	NM_001359960	245007.0	Mm.485954	NM_175537	ENSMUSG00000040433	Zbtb38	A930014K01Rik|CIBZ	zinc finger and BTB domain containing 38	protein-coding	1.07901766494657	0.968594102433529	1.43139646324941	1.2618709361761	1.33592255493793	1.49153915040115	1.56470720263898	1.85650379602707	1.63241871243819	0.184868600240568	0.660415655093519
Merged-chr19-5562623-2	chr19	5562523	5562723	+	852.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur3|SINE|Alu	-2048.0	NM_019935	18426.0	Mm.280225	NM_019935	ENSMUSG00000024922	Ovol1	BB147136|Ovo1|movo1	ovo like zinc finger 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-105710207-3	chr3	105710087	105710287	+	860.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163356, intron 1 of 1)	intron (NM_001163356, intron 1 of 1)	4729.0	NM_001163356	109050.0	Mm.212591	NM_175398	ENSMUSG00000048458	Fam212b	6530418L21Rik|inka2	family with sequence similarity 212, member B	protein-coding	0.599464432819789	0.278616994524643	1.49932085612348	0.256752691497815	0.242784780217652	1.41815191864482	0.269117088633062	0.258451214241658	-0.373407770740096	0.908545386464339	0.998431161219273
Merged-chr17-43037939-2	chr17	43037839	43038039	+	685.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_178589, exon 2 of 6)	exon (NM_178589, exon 2 of 6)	21384.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-155385295-4	chr2	155385234	155385434	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_178111, exon 2 of 4)	5' UTR (NM_178111, exon 2 of 4)	3478.0	NM_178111	68728.0	Mm.293605	NM_178111	ENSMUSG00000038375	Trp53inp2	1110029F20Rik|Tp53inp2	transformation related protein 53 inducible nuclear protein 2	protein-coding	3.29460898988046	2.72817095724319	2.76493024142046	3.52922356186123	3.32139972280056	1.6738163955553	2.65350914448313	3.81609801835834	-0.0394670271212627	0.957585118563116	0.998431161219273
Merged-chr13-20038661-2	chr13	20038551	20038751	+	571.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51856.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	-1.50665349116609	-1.47474258016605	-1.48439270304291	-1.34047911314549	-1.35344046781013	-1.32081087012943	-1.48220812674826	-1.49090069030049	0.714782431572803	0.824095104834614	1
Merged-chr1-120534013-2	chr1	120533913	120534113	+	888.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28989.0	NM_010766	17167.0	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	1.3318907983937	0.294749594212321	0.286037159543744	0.622300406775183	0.437190176491811	0.296700655636086	0.287966913106158	0.988288589389345	-0.91037408221915	0.625928526854633	1
Merged-chr4-123083531-2	chr4	123083431	123083631	+	720.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21630.0	NM_007559	12164.0	Mm.439764	NM_007559	ENSMUSG00000002384	Bmp8b	Op3	bone morphogenetic protein 8b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31401542-4	chr14	31401453	31401653	+	848.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347585, intron 2 of 7)	intron (NM_001347585, intron 2 of 7)	16124.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5431718-2	chr17	5431618	5431818	+	687.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027457, intron 3 of 3)	intron (NM_027457, intron 3 of 3)	8542.0	NM_027457	70544.0	Mm.46654	NM_027457	ENSMUSG00000004945	Tmem242	1110008A10Rik|2310046K16Rik|5730437N04Rik	transmembrane protein 242	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-47215592-4	chr13	47215499	47215699	+	867.80835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146042, intron 2 of 7)	intron (NM_146042, intron 2 of 7)	21596.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	-0.0506246483341526	-0.0245585595455413	0.964679345311191	-0.0395213070164522	-0.0489569279621976	-0.022685524653721	0.980896293220884	-0.0383672236603453	0.0411024359562296	0.985638187048853	1
Merged-chr6-121245358-2	chr6	121245258	121245458	+	833.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011909)	promoter-TSS (NM_011909)	-548.0	NM_011909	24110.0	Mm.326911	NM_011909	ENSMUSG00000030107	Usp18	1110058H21Rik|AW047653|UBP43|Ubp15	ubiquitin specific peptidase 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65532152-2	chr9	65532052	65532252	+	976.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	47935.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-20256241-2	chr5	20256106	20256306	+	655.75	f0_c57.idr|f1_balb.idr	intron (NM_001170746, intron 6 of 22)	intron (NM_001170746, intron 6 of 22)	348688.0	NM_015823	50791.0	Mm.332231	NM_015823	ENSMUSG00000040003	Magi2	AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705	membrane associated guanylate kinase, WW and PDZ domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-21687970-2	chr15	21687870	21688070	+	676.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	576518.0	NM_001008420	215654.0	Mm.300909	NM_001008420	ENSMUSG00000040452	Cdh12	Cdhb	cadherin 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-67345979-3	chr17	67345879	67346079	+	876.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	B4|SINE|B4	8480.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-86568859-2	chr11	86568759	86568959	+	806.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	15299.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99474275-2	chr15	99474174	99474374	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029236, intron 1 of 1)	intron (NM_029236, intron 1 of 1)	456.0	NM_029236	75284.0	Mm.32826	NM_029236	ENSMUSG00000037525	Bcdin3d	4930556P03Rik|AV138748	BCDIN3 domain containing	protein-coding	1.65652867230995	1.17703261617299	2.09848342547241	2.15232493339508	2.05102108046949	1.18397269006213	1.97834872014376	3.14164553178122	1.09985019805416	0.303461420760388	0.805462835517226
Merged-chr2-103744298-2	chr2	103744198	103744398	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_153126, exon 9 of 29)	exon (NM_153126, exon 9 of 29)	16972.0	NM_153126	98956.0	Mm.288005	NM_153126	ENSMUSG00000027185	Nat10	AI429152	N-acetyltransferase 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115690554-4	chr11	115690452	115690652	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001313936, intron 2 of 5)	intron (NM_001313936, intron 2 of 5)	8982.0	NM_001313937	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-70740185-4	chr9	70740075	70740275	+	984.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007399, exon 5 of 16)	exon (NM_007399, exon 5 of 16)	61193.0	NM_007399	11487.0	Mm.3037	NM_007399	ENSMUSG00000054693	Adam10	1700031C13Rik|MADM|kuz|kuzbanian	a disintegrin and metallopeptidase domain 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180267251-2	chr1	180267151	180267351	+	870.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-10951.0	NM_001128605	19165.0	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-73462928-4	chr2	73462856	73463056	+	928.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	-9067.0	NM_001289722	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-74724234-7	chr11	74724173	74724373	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_037610)	promoter-TSS (NR_037610)	111.0	NM_013625	18472.0	Mm.397111	NM_013625	ENSMUSG00000020745	Pafah1b1	LIS-1|Lis1|MMS10-U|Mdsh|Ms10u|Pafaha	platelet-activating factor acetylhydrolase, isoform 1b, subunit 1	protein-coding	4.67821033547154	4.17674364181484	4.04122305005406	3.55310934325679	4.74155299721705	4.20618165055422	4.07185459545198	3.57211684751253	0.0545184529996267	0.90737876806716	0.998431161219273
Merged-chr17-35166905-3	chr17	35166798	35166998	+	872.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2021.0	NM_020027	53761.0	Mm.272462	NM_020027	ENSMUSG00000024393	Prrc2a	3110039B05Rik|Bat-2|Bat2|D17H6S51E|G2|Wbp12|mKIAA4178	proline-rich coiled-coil 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-120898313-4	chr6	120898223	120898423	+	819.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007544, intron 3 of 5)	intron (NM_007544, intron 3 of 5)	18501.0	NM_007544	12122.0	Mm.235081	NM_007544	ENSMUSG00000004446	Bid	2700049M22Rik|AI875481|AU022477	BH3 interacting domain death agonist	protein-coding	2.90477148194952	3.48766313420239	2.61347384671243	2.97153202274771	2.84455203455213	3.08378535989939	2.13854540374979	3.1547027929077	-0.301839161456681	0.658179035530794	0.988704682801132
Merged-chr4-133157392-4	chr4	133157288	133157488	+	939.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153423, intron 1 of 8)	intron (NM_153423, intron 1 of 8)	26755.0	NM_153423	242687.0	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	3.59226445417178	2.84156523749317	3.40242505059331	3.44284714867751	2.27462369850131	2.39402779392048	1.87806450748428	3.521993972233	-1.13282545158487	0.114357027937269	0.530433874171917
Merged-chr17-27910359-4	chr17	27910247	27910447	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181413, intron 1 of 24)	intron (NM_181413, intron 1 of 24)	1041.0	NM_181413	224650.0	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	4.57836246065068	3.59883129069922	4.88844995628675	5.17070703577179	5.51594714640269	4.2690612032927	5.27221490393899	4.74597665888187	0.436316586395146	0.294456452970359	0.798191705447
Merged-chr6-34620429-4	chr6	34620309	34620509	+	997.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347100, intron 1 of 13)	MLTR14|LTR|ERV1	21905.0	NM_001347100	109624.0	Mm.308134	NM_145575	ENSMUSG00000029761	Cald1	4833423D12Rik|AI195384|AV071549|AW536160|C920027I18Rik	caldesmon 1	protein-coding	4.38099329792698	3.47767453329645	3.10070774464294	4.67318786777477	5.10055153581217	4.57038674234397	3.12862441447947	4.76778299502941	0.651554292702365	0.220158581099326	0.711345419038522
Merged-chr14-101503753-3	chr14	101503667	101503867	+	928.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081278, intron 3 of 18)	intron (NM_001081278, intron 3 of 18)	105424.0	NM_001081278	210789.0	Mm.320639	NM_173380	ENSMUSG00000033083	Tbc1d4	5930406J04Rik|A930035N22|AV295684|As160	TBC1 domain family, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-86772545-4	chr10	86772457	86772657	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003910, intron 14 of 15)	intron (NM_001003910, intron 14 of 15)	-6448.0	NM_175331	103466.0	Mm.200446	NM_175331	ENSMUSG00000054027	Nt5dc3	AU040402|AW540062|C630002B14Rik|TU12B1-TY	5'-nucleotidase domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-66713613-2	chr9	66713472	66713672	+	778.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001306148)	promoter-TSS (NM_001306148)	-114.0	NM_178396	76459.0	Mm.277921	NM_178396	ENSMUSG00000032373	Car12	2310047E01Rik|AI314958|CA-XII|Ca12	carbonic anhydrase 12	protein-coding	1.3952986382718	1.9712812313589	2.85899265552061	2.84392261287281	1.17193444841664	1.79452622753896	2.33775309600526	2.36937908127387	-0.90753152198761	0.368423302406693	0.862916999449085
Merged-chr9-96392888-2	chr9	96392788	96392988	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-28457.0	NM_001357212	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	0.994738863183721	0.560144049369889	0.866834372030089	0.957790731864622	0.908934712921129	0.561805943107181	0.874438044388865	0.963747515079904	-0.113306807245279	0.941209760617617	1
Merged-chr1-191397655-3	chr1	191397562	191397762	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144880)	promoter-TSS (NM_144880)	-621.0	NM_144880	226849.0	Mm.205569	NM_144880	ENSMUSG00000026626	Ppp2r5a	PR61alpha	protein phosphatase 2, regulatory subunit B', alpha	protein-coding	1.77678554284519	3.07971954958796	3.52664077874736	2.63005229360643	3.35047351169739	3.88164623080372	3.55370640497342	3.76651970737121	1.21107676706873	0.0601296778415489	0.36309990136288
Merged-chr17-64600111-4	chr17	64600009	64600209	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR41|LTR|ERVL	-1540.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-37272864-2	chr17	37272764	37272964	+	844.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013819, intron 5 of 7)	intron (NM_013819, intron 5 of 7)	2630.0	NM_013819	14991.0	Mm.14437	NM_013819	ENSMUSG00000016206	H2-M3	H-2M3|Hmt|M3a|MuprM3|MuprM301|MuprM302|R4B2	histocompatibility 2, M region locus 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-70847165-1	chr13	70847065	70847265	+	667.0	f0_balb.idr	Intergenic	Intergenic	-5354.0	NR_137640	271127.0	Mm.115970	NM_172053	ENSMUSG00000049538	Adamts16	-	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-63917315-2	chr7	63917215	63917415	+	875.9833369999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001256311, intron 1 of 2)	ORR1C1|LTR|ERVL-MaLR	458.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	0.0204324884229937	-0.0770824204258684	-0.414119760312111	-0.416819233000421	-0.420614116221246	-0.070140046337254	-0.413345935123145	-0.416348477232579	-1.34203201511537	0.605941210955992	1
Merged-chr6-145800376-3	chr6	145800342	145800542	+	832.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-7941.0	NM_027760	71323.0	Mm.158669	NM_027760	ENSMUSG00000030259	Rassf8	5133400D11Rik|AA815821|AW123240|Hoj1|mHoj-1	Ras association (RalGDS/AF-6) domain family (N-terminal) member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-70609945-2	chr13	70609845	70610045	+	630.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144837, intron 11 of 18)	intron (NM_144837, intron 11 of 18)	27689.0	NM_144837	218333.0	Mm.139738	NM_144837	ENSMUSG00000034525	Ice1	C77245|mKIAA0947	interactor of little elongation complex ELL subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-65968545-3	chr14	65968474	65968674	+	878.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013492)	promoter-TSS (NM_013492)	91.0	NM_013492	12759.0	Mm.200608	NM_013492	ENSMUSG00000022037	Clu	AI893575|ApoJ|Cli|D14Ucla3|SP-40|Sgp-2|Sgp2|Sugp-2	clusterin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-50001011-3	chr6	50000885	50001085	+	738.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-109256.0	NM_019939	56524.0	Mm.41288	NM_008016	ENSMUSG00000038388	Mpp6	P55t|Pals2	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-31125015-3	chr6	31124918	31125118	+	782.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110471, intron 3 of 3)	RSINE1|SINE|B4	-61925.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-29497586-2	chr19	29497486	29497686	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TCC)n|Simple_repeat|Simple_repeat	24401.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-43751862-2	chr19	43751762	43751962	+	951.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144874, intron 1 of 8)	intron (NM_144874, intron 1 of 8)	1138.0	NM_144874	226139.0	Mm.248237	NM_144874	ENSMUSG00000040018	Cox15	2900026G05Rik	cytochrome c oxidase assembly protein 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-90110644-2	chr9	90110544	90110744	+	907.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039147, intron 1 of 12)	(TTTA)n|Simple_repeat|Simple_repeat	4176.0	NM_001039147	21761.0	Mm.426209	NM_024431	ENSMUSG00000062270	Morf4l1	MORFRG15|MRG15|TEG-189|Tex189|mKIAA4002	mortality factor 4 like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-20703738-2	chr14	20703638	20703838	+	637.833374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029446)	promoter-TSS (NR_029446)	-639.0	NR_029446	76133.0	Mm.436043	NR_029446	ENSMUSG00000097577	6230400D17Rik	-	RIKEN cDNA 6230400D17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-40257644-4	chr10	40257538	40257738	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026113)	promoter-TSS (NM_026113)	74.0	NM_001359491	67371.0	Mm.64104	NM_026113	ENSMUSG00000019837	Gtf3c6	2410016F19Rik|AU019813	general transcription factor IIIC, polypeptide 6, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16252159-2	chr7	16252059	16252259	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001173550, intron 1 of 1)	B1_Mur4|SINE|Alu	7179.0	NM_001173550	12273.0	Mm.247623	NM_007577	ENSMUSG00000049130	C5ar1	C5aR|C5r1|Cd88|D7Msu1	complement component 5a receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-13295712-3	chr1	13295624	13295824	+	995.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008678, intron 1 of 22)	Tigger5|DNA|TcMar-Tigger	76705.0	NM_001302702	17978.0	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	2.25795635993934	2.85688356547671	1.37379097394203	2.38338388956242	2.16305087321999	2.56149298845067	1.86752972504286	3.18158363024664	0.47098541964592	0.601701361425006	0.973429960802861
Merged-chr2-37423914-2	chr2	37423814	37424014	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	-1011.0	NM_001290642	319817.0	Mm.288785	NM_001100591	ENSMUSG00000075376	Rc3h2	2900024N03Rik|9430019J22Rik|D930043C02Rik|Mnab|Rnf164	ring finger and CCCH-type zinc finger domains 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-112668158-4	chr12	112668105	112668305	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001331107, intron 2 of 13)	intron (NM_001331107, intron 2 of 13)	6071.0	NM_001165894	11651.0	Mm.6645	NM_009652	ENSMUSG00000001729	Akt1	Akt|LTR-akt|PKB|PKB/Akt|PKBalpha|Rac	thymoma viral proto-oncogene 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-10400000-2	chr3	10399900	10400100	+	849.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33027.0	NM_025519	66371.0	Mm.366147	NM_025519	ENSMUSG00000027536	Chmp4c	2010012P02Rik|2210015K02Rik|2310010I16Rik|Shax3|Snf7-3	charged multivesicular body protein 4C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-152274045-3	chr3	152273918	152274118	+	592.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_174868, exon 16 of 16)	3' UTR (NM_174868, exon 16 of 16)	-7668.0	NM_199465	68810.0	Mm.200188	NM_199465	ENSMUSG00000039103	Nexn	1110046H09Rik|AA553326|NELIN	nexilin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-27481753-4	chr7	27481660	27481860	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5193.0	NM_018820	55942.0	Mm.153684	NM_018820	ENSMUSG00000008384	Sertad1	1110032C13Rik|AV000455|AW456625|Sei-1|Sei1|TRIP-Br1	SERTA domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-32249267-3	chr6	32249156	32249356	+	904.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175750, intron 5 of 31)	intron (NM_175750, intron 5 of 31)	198968.0	NM_029587	76382.0	Mm.23510	NM_029587	ENSMUSG00000029766	1700012A03Rik	AI429084	RIKEN cDNA 1700012A03 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-45937096-2	chr9	45936996	45937196	+	828.599976	f1_balb.idr|f1_c57bl6.idr	TTS (NM_172257)	TTS (NM_172257)	-1038.0	NM_011526	21345.0	Mm.283283	NM_011526	ENSMUSG00000032085	Tagln	Sm22|Sm22a|Ws310	transgelin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-26582345-6	chr16	26582258	26582458	+	894.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152416, intron 1 of 12)	intron (NR_152416, intron 1 of 12)	653.0	NM_008364	16180.0	Mm.253424	NM_008364	ENSMUSG00000022514	Il1rap	6430709H04Rik|AI255955|AV239853|IL-1RAcP	interleukin 1 receptor accessory protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-38299160-3	chr6	38299053	38299253	+	893.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172467, exon 1 of 4)	exon (NM_172467, exon 1 of 4)	106.0	NM_172467	209032.0	Mm.101389	NM_172467	ENSMUSG00000047749	Zc3hav1l	B130055L09Rik|E430016P22Rik	zinc finger CCCH-type, antiviral 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-13122309-4	chr18	13122208	13122408	+	869.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	115318.0	NM_153087	225192.0	Mm.207073	NM_153087	ENSMUSG00000037346	Hrh4	AXOR35|BG26|GPCR105|GPRv53|H4|H4R|HH4R	histamine receptor H4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-17786925-2	chr3	17786842	17787042	+	707.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2979.0	NR_033490	70441.0	Mm.458192	NR_033490	ENSMUSG00000100252	Mir124-2hg	100040120|2610100L16Rik|6430547I21Rik|A930005K07Rik|AW125202|Gm2612	Mir124-2 host gene (non-protein coding)	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-31177776-2	chr6	31177676	31177876	+	744.083374	f1_balb.idr|f1_c57bl6.idr	intron (NR_110470, intron 2 of 2)	intron (NR_110470, intron 2 of 2)	40698.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-76690638-2	chr2	76690538	76690738	+	614.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_031256, intron 6 of 7)	intron (NM_031256, intron 6 of 7)	15323.0	NM_031256	83435.0	Mm.41636	NM_031256	ENSMUSG00000002733	Plekha3	FAPP1	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-80048411-3	chr17	80048334	80048534	+	557.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152119, intron 6 of 13)	intron (NR_152119, intron 6 of 13)	13834.0	NR_152119	72692.0	Mm.64579	NM_144802	ENSMUSG00000024095	Hnrnpll	2510028H02Rik|2810036L13Rik|AI256697|AI852082|Hnrpll	heterogeneous nuclear ribonucleoprotein L-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-107759625-2	chr13	107759525	107759725	+	818.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 5 of 14)	intron (NM_145456, intron 5 of 14)	72228.0	NR_045900	72257.0	Mm.234155	NR_045900	ENSMUSG00000102000	1700006H21Rik	-	RIKEN cDNA 1700006H21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-120855629-2	chr4	120855529	120855729	+	949.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_182929, intron 1 of 7)	intron (NM_182929, intron 1 of 7)	830.0	NM_182929	242662.0	Mm.192502	NM_182929	ENSMUSG00000032890	Rims3	A730060M23Rik|Nim3|Rim3|mKIAA0237	regulating synaptic membrane exocytosis 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-121197572-4	chr5	121197489	121197689	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6192.0	NM_011202	19247.0	Mm.8681	NM_011202	ENSMUSG00000043733	Ptpn11	2700084A17Rik|AW536184|PTP1D|PTP2C|SAP-2|SH-PTP2|SH-PTP3|SHP-2|Shp2|Syp	protein tyrosine phosphatase, non-receptor type 11	protein-coding	3.03010742519862	3.81498847134817	2.71907563779729	2.48219771548993	3.36819698755743	4.14461031755008	2.20256370230083	4.1372247922071	0.85223449454544	0.206413437246066	0.694292103481728
Merged-chr3-37802886-4	chr3	37802794	37802994	+	838.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-78534.0	NM_198657	381438.0	Mm.490549	NM_198657	ENSMUSG00000058174	Gm5148	EG381438	predicted gene 5148	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111668688-4	chr12	111668620	111668820	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_021273)	TTS (NM_021273)	3618.0	NM_021273	12709.0	Mm.16831	NM_021273	ENSMUSG00000001270	Ckb	B-CK|Bck|CPK-B|Ck-3|Ck3|Ckbb	creatine kinase, brain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-88719418-5	chr9	88719414	88719614	+	891.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359992)	promoter-TSS (NM_001359992)	73.0	NM_001359992	100039707.0	Mm.347377	NM_001128601	ENSMUSG00000079427	Mthfsl	Gm2382	5, 10-methenyltetrahydrofolate synthetase-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-63094463-2	chr9	63094363	63094563	+	603.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	52517.0	NM_172446	207667.0	Mm.36349	NM_172446	ENSMUSG00000022245	Skor1	AV273001|C230094B15Rik|Corl1|Lbxcor1	SKI family transcriptional corepressor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-137780494-2	chr5	137780394	137780594	+	691.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001356989)	TTS (NM_001356989)	1590.0	NM_027242	69871.0	Mm.276058	NM_027242	ENSMUSG00000029725	Ppp1r35	2010007H12Rik|2010011D20Rik|AL024004	protein phosphatase 1, regulatory subunit 35	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-40990033-2	chr9	40989933	40990133	+	785.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_019465, intron 4 of 9)	intron (NM_019465, intron 4 of 9)	14595.0	NM_019465	54698.0	Mm.42791	NM_019465	ENSMUSG00000032021	Crtam	-	cytotoxic and regulatory T cell molecule	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-46847021-4	chr7	46846942	46847142	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001136069)	promoter-TSS (NM_001136069)	-40.0	NM_001136069	16828.0	Mm.29324	NM_010699	ENSMUSG00000063229	Ldha	Ldh1|Ldhm|l7R2	lactate dehydrogenase A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-77622160-4	chr11	77622073	77622273	+	924.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14358.0	NM_144825	216965.0	Mm.340436	NM_144825	ENSMUSG00000017291	Taok1	2810468K05Rik|AU020252|D130018F14Rik|Map3k16|Markk|Psk2|mKIAA1361	TAO kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-113956690-4	chr5	113956581	113956781	+	731.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198109, intron 9 of 14)	B3|SINE|B2	37076.0	NM_198109	231637.0	Mm.389682	NM_198109	ENSMUSG00000042121	Ssh1	AW551225|Gm1394|Gm1395|SSH-1|SSH-1L	slingshot protein phosphatase 1	protein-coding	1.72881528337156	1.15552105559527	1.13074731870751	1.68560818720854	2.29798073796857	1.80921982671558	2.13704985998264	2.49336094948402	2.19413273455177	0.0422202447233002	0.29426282771152
Merged-chr11-3127200-2	chr11	3127081	3127281	+	842.400024	f0_c57.idr|f1_c57bl6.idr	intron (NR_003517, intron 2 of 6)	intron (NR_003517, intron 2 of 6)	3160.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80440577-2	chr7	80440477	80440677	+	656.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-35141.0	NM_001081454	18550.0	Mm.5241	NM_011046	ENSMUSG00000030530	Furin	9130404I01Rik|Fur|PACE|Pcsk3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4148578-4	chr19	4148471	4148671	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011778)	promoter-TSS (NM_011778)	-92.0	NM_011778	23789.0	Mm.276859	NM_011778	ENSMUSG00000024835	Coro1b	-	coronin, actin binding protein 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-151974306-4	chr2	151974203	151974403	+	954.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289151)	promoter-TSS (NM_001289151)	-322.0	NM_028666	73847.0	Mm.272444	NM_028666	ENSMUSG00000027459	Fam110a	1700008J10Rik|5430432M24Rik|AI747080	family with sequence similarity 110, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-80523065-4	chr11	80522991	80523191	+	878.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177390, intron 21 of 21)	intron (NM_177390, intron 21 of 21)	-13985.0	NR_126552	77417.0	Mm.437510	NR_126552	ENSMUSG00000085078	C030013C21Rik	-	RIKEN cDNA C030013C21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44090133-2	chr9	44090035	44090235	+	867.625	f1_balb.idr|f1_c57bl6.idr	exon (NM_016808, exon 4 of 13)	exon (NM_016808, exon 4 of 13)	5215.0	NM_198091	53376.0	Mm.272770	NM_016808	ENSMUSG00000032010	Usp2	B930035K21Rik|Ubp41	ubiquitin specific peptidase 2	protein-coding	-0.12469896457883	-0.246171837812997	-0.0839618574330383	-0.253197405165644	-0.257492563490119	-0.059814444594443	-0.0796081108583115	0.347930844990064	1.89797038008369	0.390718046909986	1
Merged-chr19-41374001-2	chr19	41373901	41374101	+	973.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 2 of 16)	intron (NM_031376, intron 2 of 16)	11069.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-94329679-4	chr11	94329566	94329766	+	707.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027799, intron 1 of 4)	intron (NM_027799, intron 1 of 4)	1665.0	NM_146024	71452.0	Mm.141054	NM_027799	ENSMUSG00000020864	Ankrd40	1110011C06Rik|5530600A18Rik|Gcap15	ankyrin repeat domain 40	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-65589024-3	chr6	65588906	65589106	+	725.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1392.0	NM_001001495	414084.0	Mm.117558	NM_001001495	ENSMUSG00000044162	Tnip3	9030611K07Rik|ABIN-3|LIND	TNFAIP3 interacting protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-30336396-2	chr6	30336296	30336496	+	567.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-31857.0	NM_001169576	22214.0	Mm.332967	NM_009459	ENSMUSG00000039159	Ube2h	1500009C23Rik|AI181839|AI326965|AI462483|AW227540|E2-20K|Gid3|N28148|Ubc8	ubiquitin-conjugating enzyme E2H	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-51089067-4	chr2	51088974	51089174	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60037.0	NM_028810	74194.0	Mm.46497	NM_028810	ENSMUSG00000017144	Rnd3	2610017M01Rik|AI661404|Arhe|Rhoe	Rho family GTPase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-88725525-4	chr10	88725413	88725613	+	775.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5588.0	NM_001037166	237433.0	Mm.478763	NM_001037166		Gm4925	EG237433	predicted gene 4925	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-155094943-2	chr1	155094843	155095043	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur2|SINE|Alu	4693.0	NM_010500	15939.0	Mm.12246	NM_010500	ENSMUSG00000056708	Ier5	-	immediate early response 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-32489183-2	chr11	32489083	32489283	+	616.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361561, intron 1 of 1)	intron (NM_001361561, intron 1 of 1)	33813.0	NM_173784	327900.0	Mm.260956	NM_173784	ENSMUSG00000044949	Ubtd2	4930571L24|9630054F20Rik|AI645720	ubiquitin domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-54122018-4	chr10	54121912	54122112	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	46090.0	NR_038016	100502920.0	Mm.403982	NR_038016	ENSMUSG00000097069	Gm16998	-	predicted gene, 16998	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139288252-8	chr5	139288184	139288384	+	880.21875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172723, intron 4 of 10)	intron (NM_172723, intron 4 of 10)	34787.0	NM_001163316	67604.0	Mm.270137	NM_026269	ENSMUSG00000025858	Get4	1110007L15Rik|AW412535|Cee	golgi to ER traffic protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5687237-2	chr19	5687135	5687335	+	739.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144868, intron 2 of 34)	intron (NM_144868, intron 2 of 34)	1673.0	NM_144868	104401.0	Mm.329650	NM_144868	ENSMUSG00000054874	Pcnx3	Pcnxl3|mKIAA4073	pecanex homolog 3	protein-coding	1.46022670188555	1.62899730979473	1.07458023218189	1.39362055007405	1.68985984845466	1.89987434060189	2.28445954190955	1.06608166126954	1.49130474114874	0.218675474257734	0.709986953966375
Merged-chr2-27691187-7	chr2	27691045	27691245	+	949.9904789999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011305, intron 1 of 9)	intron (NM_011305, intron 1 of 9)	13944.0	NM_011305	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-122642302-4	chr10	122642200	122642400	+	982.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6039.0	NR_105839	102465223.0		NR_105839	ENSMUSG00000098522	Mir6412	Gm27364|mmu-mir-6412	microRNA 6412	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128803821-4	chr10	128803811	128804011	+	917.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358267)	promoter-TSS (NM_001358267)	56.0	NM_001358267	73827.0	Mm.24630	NM_178066	ENSMUSG00000047090	Tmem198b	1110012D08Rik	transmembrane protein 198b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-37230072-4	chr9	37229942	37230142	+	908.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_020258, exon 18 of 18)	3' UTR (NM_020258, exon 18 of 18)	21726.0	NM_001310096	66279.0	Mm.41451	NM_025464	ENSMUSG00000032121	Tmem218	1810021J13Rik|AV004931	transmembrane protein 218	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-28038502-3	chr3	28038417	28038617	+	780.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008875, intron 6 of 25)	intron (NM_008875, intron 6 of 25)	54346.0	NM_008875	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-79743115-4	chr7	79743030	79743230	+	992.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001037927)	promoter-TSS (NM_001037927)	1.0	NR_153403	18631.0	Mm.20615	NM_011068	ENSMUSG00000030545	Pex11a	PEX11alpha	peroxisomal biogenesis factor 11 alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111710888-2	chr12	111710788	111710988	+	818.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_027404, exon 2 of 2)	exon (NM_027404, exon 2 of 2)	2065.0	NM_001324481	70369.0	Mm.44239	NM_027404	ENSMUSG00000049792	Bag5	1600025G07Rik|4930405J06Rik|Bag-5	BCL2-associated athanogene 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-21818266-4	chr19	21818162	21818362	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033759, intron 12 of 23)	intron (NM_001033759, intron 12 of 23)	39922.0	NM_031997	83921.0	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-150826615-2	chr2	150826515	150826715	+	825.900024	f1_balb.idr|f1_c57bl6.idr	intron (NM_153781, intron 16 of 19)	intron (NM_153781, intron 16 of 19)	15955.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-114722504-2	chr5	114722404	114722604	+	568.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_029992)	TTS (NM_029992)	2989.0	NR_105995	102465622.0		NR_105995	ENSMUSG00000098656	Mir7028	Gm27674|mmu-mir-7028	microRNA 7028	ncRNA	-0.376631107883136	-0.436003870889574	-0.0750754889838827	-0.629472420847751	-0.632999484168134	-0.62297430919243	-0.62625021464329	-0.629035364451281	-3.22792173963074	0.221352207808775	1
Merged-chr2-83728567-4	chr2	83728487	83728687	+	975.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008402, intron 1 of 29)	intron (NM_008402, intron 1 of 29)	4190.0	NM_008402	16410.0	Mm.227	NM_008402	ENSMUSG00000027087	Itgav	1110004F14Rik|2610028E01Rik|CD51|D430040G12Rik	integrin alpha V	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-52768495-6	chr18	52768437	52768637	+	860.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199154, intron 1 of 10)	CpG	393.0	NM_001199154	67847.0	Mm.292168	NM_026408	ENSMUSG00000024534	Sncaip	2810407O15Rik|4933427B05Rik|BB104594|SYPH1	synuclein, alpha interacting protein (synphilin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-4526454-4	chr7	4526249	4526449	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033548, intron 9 of 11)	intron (NM_001033548, intron 9 of 11)	-3821.0	NM_009406	21954.0	Mm.27674	NM_009406	ENSMUSG00000035458	Tnni3	Tn1|cTnI	troponin I, cardiac 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-98568544-2	chr15	98568444	98568644	+	894.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009833)	promoter-TSS (NM_009833)	-908.0	NM_009833	12455.0	Mm.29941	NM_009833	ENSMUSG00000011960	Ccnt1	2810478G24Rik|AI115585|CycT1	cyclin T1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-32121127-2	chr5	32121027	32121227	+	551.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15345.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-8822721-4	chr4	8822604	8822804	+	985.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355382, intron 7 of 36)	intron (NM_001355382, intron 7 of 36)	71380.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-59519499-2	chr2	59519399	59519599	+	561.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1-int|LTR|ERVL-MaLR	34846.0	NM_029723	76747.0	Mm.275769	NM_029723	ENSMUSG00000026989	Dapl1	2310032F03Rik|EEDA	death associated protein-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-13981792-1	chr10	13981692	13981892	+	562.5	f1_balb.idr	intron (NM_001358782, intron 1 of 9)	intron (NM_001358782, intron 1 of 9)	15413.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81084045-4	chr15	81083966	81084166	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001082536, intron 2 of 13)	intron (NM_001082536, intron 2 of 13)	20981.0	NM_153049	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-80901295-2	chr1	80901195	80901395	+	728.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-142742.0	NM_175291	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-134188687-2	chr5	134188587	134188787	+	768.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359852, intron 1 of 14)	intron (NM_001359852, intron 1 of 14)	4649.0	NM_053266	114674.0	Mm.218744	NM_053266	ENSMUSG00000015942	Gtf2ird2	1700012P16Rik	GTF2I repeat domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-69635899-4	chr2	69635754	69635954	+	972.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-11401.0	NM_028284	72569.0	Mm.252136	NM_028284	ENSMUSG00000063145	Bbs5	1700049I01Rik|2700023J09Rik	Bardet-Biedl syndrome 5 (human)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-73515218-2	chr2	73515118	73515318	+	901.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	14269.0	NM_153138	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-13677567-4	chr6	13677450	13677650	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175312, intron 1 of 4)	CpG	416.0	NM_175312	101148.0	Mm.354863	NM_175312	ENSMUSG00000042742	Bmt2	AI666701|B630005N14Rik	base methyltransferase of 25S rRNA 2	protein-coding	-0.010235080663861	0.0165714178015807	0.00794274463894012	1.03041838706834	-0.00851944805030336	0.0184970484638529	0.00985816449504007	1.04120527543473	0.0281063908350799	0.990062301643353	1
Merged-chr14-7972148-4	chr14	7972091	7972291	+	968.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007870, intron 6 of 7)	intron (NM_007870, intron 6 of 7)	21991.0	NM_007870	13421.0	Mm.272258	NM_007870	ENSMUSG00000025279	Dnase1l3	DNasegamma|Dhp2|Lsd	deoxyribonuclease 1-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-69679985-4	chr3	69679906	69680106	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR1C|LTR|ERV1	-42049.0	NM_133787	97112.0	Mm.21062	NM_133787	ENSMUSG00000027787	Nmd3	C87860	NMD3 ribosome export adaptor	protein-coding	0.42922794391907	2.03078848654252	0.72081621952227	0.452624445281433	0.432783753851569	1.69776810879187	0.728617856677216	0.697934648180242	-0.419722156171542	0.791061740409711	0.998431161219273
Merged-chr13-64172326-4	chr13	64172222	64172422	+	947.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019986, intron 2 of 7)	intron (NM_019986, intron 2 of 7)	10456.0	NM_019986	56541.0	Mm.40989	NM_019986	ENSMUSG00000021476	Habp4	4933413D03Rik|4933428J01Rik	hyaluronic acid binding protein 4	protein-coding	3.55724219094711	3.13047761256963	3.23540739180867	2.53001532116984	4.05717233869469	4.05516079836735	2.63231174161954	3.41974707881066	0.768082790680707	0.210333147594075	0.69949048545273
Merged-chr10-80611008-2	chr10	80610908	80611108	+	760.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019575, intron 4 of 6)	intron (NM_019575, intron 4 of 6)	1748.0	NR_105877	102465550.0		NR_105877	ENSMUSG00000099283	Mir6912	Gm27990|mmu-mir-6912	microRNA 6912	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-58965687-1	chr11	58965587	58965787	+	584.0	f1_balb.idr	intron (NM_031172, intron 2 of 6)	intron (NM_031172, intron 2 of 6)	1906.0	NM_031172	56631.0	Mm.179733	NM_031172	ENSMUSG00000036964	Trim17	Rnf16|terf	tripartite motif-containing 17	protein-coding	-0.499940950918087	-0.487518524828365	0.0891561271406926	-0.494726023626598	-0.499164980458282	-0.486601867615524	0.100277611126392	-0.494177430718284	0.0410194320726077	0.98816738256539	1
Merged-chr5-122911390-2	chr5	122911255	122911455	+	930.25	f0_balb.idr|f1_balb.idr	intron (NM_001003953, intron 12 of 22)	intron (NM_001003953, intron 12 of 22)	-11005.0	NM_013910	30841.0	Mm.86406	NM_013910	ENSMUSG00000029475	Kdm2b	Cxxc2|Fbl10|Fbxl10|Jhdm1b|PCCX2	lysine (K)-specific demethylase 2B	protein-coding	1.71278181870881	1.39896548468687	1.33038486410443	2.70230966123983	4.30494257438026	3.90771563873639	2.1671165776674	4.55970769530972	3.48010986226364	2.74438900411458e-05	0.00105846103808344
Merged-chr12-76580900-3	chr12	76580827	76581027	+	811.9523929999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_013675, exon 36 of 36)	3' UTR (NM_013675, exon 36 of 36)	-33002.0	NR_046044	100504549.0	Mm.440349	NR_046044	ENSMUSG00000112388	AI463170	-	expressed sequence AI463170	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31131034-4	chr14	31130939	31131139	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2109.0	NM_001308464	66487.0	Mm.379116	NM_001308091	ENSMUSG00000058351	Smim4	2010107H07Rik|Gm41122	small integral membrane protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124137293-2	chr5	124137193	124137393	+	822.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289472, intron 5 of 24)	RSINE1|SINE|B4	21185.0	NM_144509	65105.0	Mm.29430	NM_144509	ENSMUSG00000029404	Arl6ip4	AA408210|AA408365|Aip-4|Srp25	ADP-ribosylation factor-like 6 interacting protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-105258266-3	chr4	105258192	105258392	+	667.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	100945.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-87086805-4	chr11	87086692	87086892	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024262)	promoter-TSS (NM_024262)	-15.0	NM_024262	74133.0	Mm.23257	NM_024262	ENSMUSG00000020495	Smg8	1200011M11Rik	smg-8 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-104314894-3	chr7	104314806	104315006	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040749)	promoter-TSS (NR_040749)	-125.0	NR_040749	622070.0	Mm.486406	NR_040749	ENSMUSG00000087175	Gm15133	-	predicted gene 15133	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133825770-2	chr4	133825659	133825859	+	755.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	48972.0	NM_001285506	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	2.83208754825348	2.79463712183355	1.69239624145391	1.86739744728817	3.06933074094149	3.84706813781111	2.46401113856674	1.87797022709121	1.13697613713811	0.176376717973837	0.646092365840656
Merged-chr7-73546721-3	chr7	73546621	73546821	+	800.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_037569, intron 4 of 4)	intron (NR_037569, intron 4 of 4)	-4975.0	NM_001081345	244059.0	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-9650079-1	chr4	9649979	9650179	+	785.0	f1_balb.idr	intron (NM_001290367, intron 1 of 22)	intron (NM_001290367, intron 1 of 22)	-6362.0	NM_001177852	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	0.749388673040746	0.929361411062967	0.192859542215894	0.497147198731764	0.458267553614925	0.200786857019371	0.194287980884437	0.18873138806486	-2.6384658603448	0.189642278477192	1
Merged-chr8-13785737-5	chr8	13785595	13785795	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025924)	promoter-TSS (NM_025924)	80.0	NM_025924	67031.0	Mm.44858	NM_025924	ENSMUSG00000038398	Upf3a	2600001C03Rik|4930546M19Rik|RENT3A|UPF3	UPF3 regulator of nonsense transcripts homolog A (yeast)	protein-coding	5.36048132917208	5.47689653373299	4.88872766192152	5.65299108496966	6.5023770682575	5.29499848818853	6.65234465499142	6.29292021119563	1.00630361621139	0.000846421345733053	0.0168880764513944
Merged-chr3-58122882-4	chr3	58122780	58122980	+	876.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40927.0	NR_040538	67850.0	Mm.416968	NR_040538	ENSMUSG00000100666	1700007F19Rik	-	RIKEN cDNA 1700007F19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95984408-2	chr3	95984308	95984508	+	980.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-1102.0	NR_045872	668224.0	Mm.357766	NR_045872		Gm9054	EG668224	predicted gene 9054	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55607510-2	chr14	55607410	55607610	+	706.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159418, intron 6 of 8)	intron (NM_001159418, intron 6 of 8)	2931.0	NM_001159418	16391.0	Mm.2032	NM_008394	ENSMUSG00000002325	Irf9	Irf-9|Isgf3g|p48	interferon regulatory factor 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-109597948-2	chr10	109597848	109598048	+	567.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	402271.0	NM_001081035	260315.0	Mm.225050	NM_177797	ENSMUSG00000020181	Nav3	4732483H20Rik|9630020C08Rik|POMFIL1|Pomfil1p|mKIAA0938|unc53H3	neuron navigator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-80030659-4	chr15	80030623	80030823	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA5|LINE|L1	-15915.0	NM_011057	18591.0	Mm.144089	NM_011057	ENSMUSG00000000489	Pdgfb	PDGF-B|Sis	platelet derived growth factor, B polypeptide	protein-coding	5.53136069363836	4.66427603295364	4.20582229173176	5.19014927346148	5.64366172738295	4.58088286057537	4.97063955114327	5.50936681077506	0.293010507853262	0.436995043602356	0.908362185228875
Merged-chr5-139755111-1	chr5	139755011	139755211	+	597.0	f1_c57bl6.idr	intron (NM_026748, intron 39 of 46)	intron (NM_026748, intron 39 of 46)	12832.0	NR_106004	102465628.0		NR_106004	ENSMUSG00000098574	Mir7037	Gm27447|mmu-mir-7037	microRNA 7037	ncRNA	-0.130003552156981	-0.508589014509616	0.276640727243415	-0.516008256961989	-0.520586423815737	-0.507646675322249	-0.511850408984313	-0.515442929461801	-3.54636015301834	0.185860631249803	1
Merged-chr10-79856073-4	chr10	79855959	79856159	+	884.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077363, intron 1 of 13)	intron (NM_001077363, intron 1 of 13)	-1088.0	NR_029447	414101.0	Mm.401339	NR_029447	ENSMUSG00000091994	E130317F20Rik	-	RIKEN cDNA E130317F20 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-13271991-1	chr4	13271891	13272091	+	709.0	f0_balb.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	365154.0	NM_001171801	208820.0	Mm.12057	NM_173746	ENSMUSG00000055963	Triqk	C130086A10|Gm11818	triple QxxK/R motif containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-71215402-2	chr9	71215302	71215502	+	567.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009022)	promoter-TSS (NM_009022)	-16.0	NR_110518	100041660.0	Mm.487231	NR_110518		Gm3458	-	predicted gene 3458	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-102381755-4	chr15	102381664	102381864	+	874.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14796.0	NM_001348205	170574.0	Mm.263284	NM_130458	ENSMUSG00000060284	Sp7	6430578P22Rik|C22|Osx	Sp7 transcription factor 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83010202-4	chr6	83010100	83010300	+	929.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033079, intron 7 of 9)	RMER6B|LTR|ERVK	23271.0	NM_010070	13448.0	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-21941369-3	chr10	21941257	21941457	+	785.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161845, intron 2 of 13)	intron (NM_001161845, intron 2 of 13)	-37315.0	NM_001161847	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118693916-2	chr9	118693816	118694016	+	770.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 14 of 27)	intron (NM_133721, intron 14 of 27)	-17776.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-87408607-2	chr11	87408507	87408707	+	714.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_031386, intron 1 of 30)	L1MB3|LINE|L1	3542.0	NM_031386	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139286751-4	chr5	139286640	139286840	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172723, intron 4 of 10)	intron (NM_172723, intron 4 of 10)	33243.0	NM_001163316	67604.0	Mm.270137	NM_026269	ENSMUSG00000025858	Get4	1110007L15Rik|AW412535|Cee	golgi to ER traffic protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-88265926-2	chr1	88265826	88266026	+	905.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_198652, exon 8 of 8)	exon (NM_198652, exon 8 of 8)	3482.0	NR_040291	78605.0	Mm.384762	NR_040291		6430706D22Rik	-	RIKEN cDNA 6430706D22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-101831106-2	chr5	101831006	101831206	+	567.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	65976.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-113835216-4	chr5	113835105	113835305	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4704.0	NM_009151	20345.0	Mm.332590	NM_009151	ENSMUSG00000048163	Selplg	CD162|Psgl-1|Psgl1|Selp1|Selpl	selectin, platelet (p-selectin) ligand	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-113776379-4	chr5	113776257	113776457	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025526, intron 3 of 4)	intron (NM_025526, intron 3 of 4)	3545.0	NM_025526	66383.0	Mm.29497	NM_025526	ENSMUSG00000025825	Iscu	2310020H20Rik|AA407971|Nifu|Nifun	iron-sulfur cluster assembly enzyme	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-59636887-4	chr10	59636778	59636978	+	994.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20186.0	NM_001033259	215999.0	Mm.296470	NM_001033259	ENSMUSG00000009647	Mcu	2010012O16Rik|AV064928|C10orf42|Ccdc109a|D130073L02Rik|Gm64	mitochondrial calcium uniporter	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-154161620-2	chr4	154161520	154161720	+	607.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026388)	promoter-TSS (NM_026388)	-936.0	NM_026388	67808.0	Mm.288737	NM_026388	ENSMUSG00000029030	Tprgl	1200015A19Rik|Svap30|Tprg1l|mover	transformation related protein 63 regulated like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-163945830-1	chr2	163945730	163945930	+	887.0	f1_c57bl6.idr	Intergenic	MT2B2|LTR|ERVL	-27147.0	NM_183023	241770.0	Mm.330760	NM_183023	ENSMUSG00000035226	Rims4	6530406L02|Rim4	regulating synaptic membrane exocytosis 4	protein-coding	-1.18378942727406	-1.15669478905697	-0.457913181653105	-1.17806440097404	-1.18323730008524	-1.15415234459186	-1.16577117532349	-1.17633933179771	-2.81844548480871	0.412768592413622	1
Merged-chr6-52424654-4	chr6	52424567	52424767	+	805.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-67784.0	NR_046049	74304.0	Mm.490579	NR_046049	ENSMUSG00000107895	1700094M24Rik	-	RIKEN cDNA 1700094M24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191909679-2	chr1	191909579	191909779	+	601.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_009579, exon 2 of 2)	exon (NM_009579, exon 2 of 2)	-2152.0	NR_030669	98736.0	Mm.379232	NM_001024489	ENSMUSG00000055833	1700034H15Rik	4930557M11Rik|BB016121	RIKEN cDNA 1700034H15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-30658382-1	chr17	30658282	30658482	+	1000.0	f1_balb.idr	intron (NM_013811, intron 11 of 92)	intron (NM_013811, intron 11 of 92)	31446.0	NM_013811	13417.0	Mm.426017	NM_013811	ENSMUSG00000033826	Dnah8	ATPase|Dnahc8|Hst6.7b|P1-Loop	dynein, axonemal, heavy chain 8	protein-coding	-0.455694536164744	0.0203254804656339	-0.589499130135146	-0.292206451575096	-0.595990477886599	-0.585211491320811	-0.588728289560969	-0.59172235154709	-3.31552733552988	0.201127267922385	1
Merged-chr1-183116739-1	chr1	183116639	183116839	+	662.0	f0_balb.idr	intron (NM_001278218, intron 3 of 8)	intron (NM_001278218, intron 3 of 8)	30818.0	NM_001278220	68897.0	Mm.327216	NM_026866	ENSMUSG00000030768	Disp1	1190008H24Rik|DispA	dispatched RND transporter family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4044348-3	chr19	4044254	4044454	+	890.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	-2133.0	NM_181796	14869.0	Mm.441542	NM_181796	ENSMUSG00000038155	Gstp2	GSTpiA|Gst-3|Gst3	glutathione S-transferase, pi 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-61648359-4	chr14	61648264	61648464	+	821.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028264, intron 1 of 6)	CpG	-16254.0	NR_029733	387174.0		NR_029733	ENSMUSG00000093007	Mir15a	Mirn15a|mir-15a|mmu-mir-15a	microRNA 15a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-37331183-4	chr13	37331098	37331298	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14147.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	2.28698018937929	2.30043877325539	2.22566473514484	1.8561533645589	2.79447302916724	2.88205002955705	2.49402379586077	2.17618786135477	0.996058555696302	0.215038992996269	0.705944860566832
Merged-chr6-118139188-4	chr6	118139078	118139278	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030165)	promoter-TSS (NM_030165)	-38.0	NM_030165	78752.0	Mm.300317	NM_030165	ENSMUSG00000042042	Csgalnact2	4632415D10Rik|Galnact2	chondroitin sulfate N-acetylgalactosaminyltransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-88591146-2	chr1	88591046	88591246	+	758.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39629.0	NR_037971	100503197.0	Mm.99352	NR_037971	ENSMUSG00000100798	Gm19589	-	predicted gene, 19589	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-65883585-4	chr5	65883492	65883692	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081105, intron 1 of 2)	intron (NM_001081105, intron 1 of 2)	20023.0	NM_001081105	74734.0	Mm.20323	NM_001081105	ENSMUSG00000029204	Rhoh	5830400A04Rik|AU019774|Arhh	ras homolog family member H	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-78503717-2	chr9	78503617	78503817	+	574.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21993.0	NM_010106	13627.0	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-144248379-4	chr5	144248279	144248479	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163709, intron 1 of 2)	intron (NM_001163709, intron 1 of 2)	3942.0	NM_001163709	55950.0	Mm.38011	NM_018772	ENSMUSG00000047843	Bri3	I3	brain protein I3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26661919-4	chr17	26661814	26662014	+	970.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-14482.0	NM_025272	11974.0	Mm.22602	NM_025272	ENSMUSG00000015575	Atp6v0e	Atp6k|Atp6v0e1|M9.2	ATPase, H+ transporting, lysosomal V0 subunit E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122769435-4	chr5	122769303	122769503	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199676, intron 1 of 16)	ID_B1|SINE|B4	10007.0	NM_001199676	207565.0	Mm.289237	NM_145358	ENSMUSG00000029471	Camkk2	6330570N16Rik|AW061083|mKIAA0787	calcium/calmodulin-dependent protein kinase kinase 2, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10893566-2	chr19	10893466	10893666	+	830.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1665.0	NM_134129	28000.0	Mm.491104	NM_134129	ENSMUSG00000024735	Prpf19	AA617263|AL024362|D19Wsu55e|NMP200|PSO4|Prp19|Snev	pre-mRNA processing factor 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-3557739-6	chr17	3557476	3557676	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045302)	promoter-TSS (NR_045302)	137.0	NM_146074	224481.0	Mm.226554	NM_146074	ENSMUSG00000036983	Tfb1m	AI429207	transcription factor B1, mitochondrial	protein-coding	2.48801914978707	1.87845551466503	1.97015608621924	1.09161696760713	1.81561093691025	3.29741941865946	1.63400115506625	1.36258577931791	0.749115657153107	0.479313175190272	0.928092227925527
Merged-chr8-69011717-1	chr8	69011617	69011817	+	561.0	f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-77019.0	NM_007509	11966.0	Mm.249096	NM_007509	ENSMUSG00000006273	Atp6v1b2	AI194269|AI790362|Atp6b2|HO57|R74844	ATPase, H+ transporting, lysosomal V1 subunit B2	protein-coding	1.54683948887177	1.12444387465341	1.1036388749528	2.07310660092081	1.97935593729519	1.88741034635432	2.05499152406201	1.88357343944429	1.24530332847885	0.269598290163022	0.772959591673376
Merged-chr19-5894135-4	chr19	5894008	5894208	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001362045)	promoter-TSS (NM_001362045)	20.0	NM_001362045	332359.0	Mm.329642	NM_198634	ENSMUSG00000044390	Tigd3	-	tigger transposable element derived 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-63634517-1	chr13	63634417	63634617	+	543.0	f1_c57bl6.idr	Intergenic	Intergenic	-61057.0	NM_001328514	19206.0	Mm.228798	NM_008957	ENSMUSG00000021466	Ptch1	A230106A15Rik|Ptc|Ptc1|Ptch|mes|wig	patched 1	protein-coding	1.56170192386276	0.67818565758663	1.89883018132358	0.619319454681309	0.37097488915282	0.41819355370366	0.403323284209719	0.390270178896862	-4.93298143485593	0.00337911634323859	0.0494422413246056
Merged-chr4-128948351-2	chr4	128948251	128948451	+	639.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301841, intron 5 of 8)	intron (NM_001301841, intron 5 of 8)	14104.0	NM_172875	242669.0	Mm.215814	NM_172875	ENSMUSG00000028789	Azin2	4933429I20Rik|Adc|Azi2|B930082O19|ODC-p|Odcp	antizyme inhibitor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30133223-4	chr2	30133115	30133315	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146252)	promoter-TSS (NM_146252)	-531.0	NM_146252	70296.0	Mm.19172	NM_146252	ENSMUSG00000039678	Tbc1d13	2600014A06Rik|BC025586	TBC1 domain family, member 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-22015836-2	chr9	22015736	22015936	+	598.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010487, exon 7 of 7)	3' UTR (NM_010487, exon 7 of 7)	12848.0	NM_001293650	19089.0	Mm.214593	NM_008925	ENSMUSG00000003402	Prkcsh	80K-H|PKCSH	protein kinase C substrate 80K-H	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-137411089-4	chr7	137410956	137411156	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029886)	promoter-TSS (NM_029886)	-300.0	NM_029886	77252.0	Mm.29184	NM_029886	ENSMUSG00000040139	9430038I01Rik	-	RIKEN cDNA 9430038I01 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-8084793-2	chr8	8084693	8084893	+	998.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	575980.0	NM_010111	13642.0	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-102500206-3	chr2	102500118	102500318	+	868.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-48426.0	NM_010218	14221.0	Mm.29730	NM_010218	ENSMUSG00000075012	Fjx1	-	four jointed box 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-96230538-2	chr10	96230438	96230638	+	638.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_110448, intron 1 of 2)	intron (NR_110448, intron 1 of 2)	4331.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-55896060-2	chr2	55895960	55896160	+	562.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	460090.0	NM_008426	16519.0	Mm.5127	NM_008426	ENSMUSG00000026824	Kcnj3	GIRK-1|GIRK1|Kcnf3|Kir3.1	potassium inwardly-rectifying channel, subfamily J, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-82341292-4	chr15	82341090	82341290	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177391)	promoter-TSS (NM_177391)	11.0	NM_177391	338368.0	Mm.444916	NM_177391	ENSMUSG00000049687	Fam109b	C920005C14Rik|IPIP27B|Ses2	family with sequence similarity 109, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-14292997-2	chr2	14292897	14293097	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008625, intron 13 of 29)	MTEa|LTR|ERVL-MaLR	31994.0	NR_030609	100124488.0		NR_030609	ENSMUSG00000077897	Mir511	Mirn511|mir-511|mmu-mir-511	microRNA 511	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-71362009-4	chr10	71361908	71362108	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027184, intron 1 of 5)	intron (NM_027184, intron 1 of 5)	14245.0	NM_027184	69718.0	Mm.245867	NM_027184	ENSMUSG00000060733	Ipmk	2410017C19Rik|AA408208|Impk	inositol polyphosphate multikinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-31009479-4	chr9	31009374	31009574	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-21170.0	NM_001115130	235132.0	Mm.239355	NM_172765	ENSMUSG00000047412	Zbtb44	6030404E16Rik|Btbd15|E230011F09	zinc finger and BTB domain containing 44	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-24442493-4	chr13	24442401	24442601	+	906.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111110, intron 11 of 16)	intron (NM_001111110, intron 11 of 16)	27379.0	NM_001284520	12763.0	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-22165589-2	chr8	22165489	22165689	+	669.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011848, intron 1 of 15)	B1_Mur1|SINE|Alu	846.0	NM_011848	23954.0	Mm.41413	NM_011848	ENSMUSG00000031478	Nek3	-	NIMA (never in mitosis gene a)-related expressed kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166688176-4	chr2	166688044	166688244	+	977.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	25688.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-36792090-4	chr5	36791987	36792187	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4667.0	NM_026242	67568.0	Mm.332336	NM_026242	ENSMUSG00000055302	Mrfap1	9130413I22Rik|AL022827|Pam14	Morf4 family associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-66854281-2	chr15	66854181	66854381	+	721.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22452.0	NM_009192	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-98342141-2	chr12	98342041	98342241	+	724.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	73506.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25685114-2	chr7	25685014	25685214	+	847.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_172148, intron 2 of 2)	B1F1|SINE|Alu	-1888.0	NM_011577	21803.0	Mm.248380	NM_011577	ENSMUSG00000002603	Tgfb1	TGF-beta1|TGFbeta1|Tgfb|Tgfb-1	transforming growth factor, beta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-122105030-4	chr14	122104931	122105131	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_015586, exon 2 of 4)	non-coding (NR_015586, exon 2 of 4)	1943.0	NR_015586	319727.0	Mm.215552	NR_015586		A330035P11Rik	-	RIKEN cDNA A330035P11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-45486779-4	chr9	45486667	45486867	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081270, intron 3 of 32)	intron (NM_001081270, intron 3 of 32)	-55535.0	NR_040732	74602.0	Mm.394117	NR_040732	ENSMUSG00000097074	4833428L15Rik	-	RIKEN cDNA 4833428L15 gene	ncRNA	7.00281063621574	6.59927691921722	7.45210871426925	6.93161003558217	5.64718452510095	4.41207876653171	5.5039304045132	5.44265281244833	-1.83281555185946	4.89658810909671e-12	1.37693587811584e-09
Merged-chr12-85506302-2	chr12	85506202	85506402	+	544.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER20C_Mm|LTR|ERVK	32412.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-112367827-2	chr13	112367727	112367927	+	720.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_029898, exon 9 of 11)	exon (NM_029898, exon 9 of 11)	79309.0	NM_001168404	77318.0	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-75425914-3	chr1	75425811	75426011	+	700.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085370, intron 29 of 38)	intron (NM_001085370, intron 29 of 38)	-10025.0	NM_133708	69080.0	Mm.23951	NM_133708	ENSMUSG00000033021	Gmppa	1810012N01Rik	GDP-mannose pyrophosphorylase A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-38966248-2	chr6	38966148	38966348	+	549.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 3 of 12)	intron (NM_011539, intron 3 of 12)	47262.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-62549127-2	chr11	62549027	62549227	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2044.0	NM_011664	22187.0	Mm.371592	NM_011664	ENSMUSG00000019505	Ubb	AL033289|Rps27a|Uba52|Ubb2|Ubc	ubiquitin B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-33908399-2	chr1	33908299	33908499	+	938.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310484)	promoter-TSS (NM_001310484)	174.0	NM_001276764	13518.0	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-54974748-2	chr6	54974648	54974848	+	859.583374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2136.0	NM_172729	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	-0.704347454874818	-1.05455977589609	-1.06579631309813	-1.07151958844463	-1.07425770968218	-0.707535259853554	-1.06325260737347	-1.07118043667044	-0.117338903016028	0.971356004086452	1
Merged-chr2-77274699-2	chr2	77274599	77274799	+	707.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175465, intron 1 of 17)	intron (NM_175465, intron 1 of 17)	5893.0	NM_175465	228071.0	Mm.27120	NM_175465	ENSMUSG00000042272	Sestd1	1500031J16Rik|A930010O20|Solo/Trio8	SEC14 and spectrin domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-15229945-2	chr17	15229845	15230045	+	576.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10838.0	NR_046164	328747.0	Mm.256835	NR_046164	ENSMUSG00000097624	Gm5091	C330048F19	predicted gene 5091	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-24432312-2	chr7	24432212	24432412	+	751.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_199013, exon 3 of 3)	exon (NM_199013, exon 3 of 3)	3220.0	NM_001358034	210145.0	Mm.33811	NM_199013	ENSMUSG00000062028	Irgc1	F630044M05Rik|Gm1102|Gm474|Ifgge|Iigp5|Irgc	immunity-related GTPase family, cinema 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-38459867-2	chr18	38459767	38459967	+	865.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355749, intron 6 of 7)	B1_Mur4|SINE|Alu	40960.0	NM_001355749	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-38180528-2	chr7	38180428	38180628	+	656.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2689.0	NM_001085385	72244.0	Mm.187554	NM_028166		1600014C10Rik	AI428873	RIKEN cDNA 1600014C10 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-33390347-3	chr8	33390243	33390443	+	891.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001098233, intron 1 of 1)	intron (NM_001098233, intron 1 of 1)	4018.0	NM_001098233	75029.0	Mm.159402	NM_152821	ENSMUSG00000049184	Purg	4930486B15Rik	purine-rich element binding protein G	protein-coding	0.228561838873313	0.933733983804465	1.08823249045687	0.940960803285383	0.230226785329423	0.256702549972307	0.248184084960733	0.240842758804497	-4.4047993908638	0.0247634932798287	1
Merged-chr4-19853919-3	chr4	19853815	19854015	+	692.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35188.0	NM_028746	74087.0	Mm.173833	NM_028746	ENSMUSG00000041052	Slc7a13	0610009O04Rik|AGT-1|AGT1|XAT2	solute carrier family 7, (cationic amino acid transporter, y+ system) member 13	protein-coding	-1.84446540621454	-1.66703209084435	-1.82297003008319	-1.83062437091832	-1.84230234211872	-1.6650127732569	-1.82086056797065	-1.82925424756847	0.037684011990387	0.991491645451152	1
Merged-chr2-19344731-4	chr2	19344553	19344753	+	998.4285890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_126563, exon 1 of 4)	non-coding (NR_126563, exon 1 of 4)	336.0	NR_126563	108871.0	Mm.107666	NR_126563		4930447M23Rik	-	RIKEN cDNA 4930447M23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-106474394-2	chr4	106474294	106474494	+	732.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10069.0	NM_153565	100102.0	Mm.133268	NM_153565	ENSMUSG00000044254	Pcsk9	AI415265|AI747682|FH3|HCHOLA3|Narc1|PC9	proprotein convertase subtilisin/kexin type 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115858855-2	chr11	115858755	115858955	+	959.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	34797.0	NM_001252532	217325.0	Mm.290450	NM_145438	ENSMUSG00000020782	Llgl2	9130006H11Rik|Llglh2	LLGL2 scribble cell polarity complex component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-21989287-2	chr14	21989187	21989387	+	728.333374	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_145459, exon 1 of 3)	5' UTR (NM_145459, exon 1 of 3)	314.0	NM_145459	218820.0	Mm.292401	NM_145459	ENSMUSG00000039081	Zfp503	AI181838|B830002A16Rik|Nolz-1|Nolz1|Znf503	zinc finger protein 503	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-6863066-2	chr3	6863034	6863234	+	836.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTA_Mm-int|LTR|ERVL-MaLR	-242691.0	NM_027048	69347.0	Mm.45822	NM_027048	ENSMUSG00000069118	1700008P02Rik	-	RIKEN cDNA 1700008P02 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-102514350-3	chr7	102514148	102514348	+	761.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19475.0	NM_146840	258837.0	Mm.377714	NM_146840	ENSMUSG00000044824	Olfr545	MOR42-1|S50	olfactory receptor 545	protein-coding	3.11672806450511	1.98839786536204	2.33200583798554	2.63771002521391	2.16091568345483	1.30804109029032	1.53841408774779	1.8745315299043	-1.96373263374506	0.0376707256616743	0.276042365526528
Merged-chr9-7837067-4	chr9	7836977	7837177	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291503)	promoter-TSS (NM_001291503)	-20.0	NM_007465	11797.0	Mm.335659	NM_007465	ENSMUSG00000057367	Birc2	AW146227|Api1|Api2|Birc3|C-IAP1|C330006D17Rik|HIAP1|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF48|cIAP1|cIAP2|mcIAP1	baculoviral IAP repeat-containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-10060279-2	chr17	10060179	10060379	+	711.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	259082.0	NM_021881	19317.0	Mm.130694	NM_021881	ENSMUSG00000062078	Qk	1110003F05Rik|1500005P18|QkI|l(17)-1Wis|l17Wis1	quaking	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-27490840-4	chr7	27490738	27490938	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_018820)	TTS (NM_018820)	3885.0	NM_018820	55942.0	Mm.153684	NM_018820	ENSMUSG00000008384	Sertad1	1110032C13Rik|AV000455|AW456625|Sei-1|Sei1|TRIP-Br1	SERTA domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-132813152-4	chr7	132813035	132813235	+	986.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_212473)	promoter-TSS (NM_212473)	61.0	NM_212473	77938.0	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171221053-4	chr1	171220976	171221176	+	867.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001305585)	promoter-TSS (NM_001305585)	-488.0	NM_001305585	11807.0	Mm.389209	NM_013474	ENSMUSG00000005681	Apoa2	Alp-2|Apo-AII|ApoA-II|ApoAII|Apoa-2|Hdl-1	apolipoprotein A-II	protein-coding	1.81934548084711	1.91726242071071	1.3760118978144	1.34661842602082	2.37933156920416	1.93148997564797	1.72954780739972	1.67902242526093	0.975047292795944	0.344910607904372	0.845797837334461
Merged-chr2-166777065-2	chr2	166776965	166777165	+	638.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-16702.0	NM_023815	76367.0	Mm.330796	NM_023815	ENSMUSG00000042854	Trp53rkb	2810408M09Rik|4933401B08Rik|5630401H01Rik|Nori-2|PRPK|Tp53rk|Trp53rk|Trp53tk|mNori-2p	transformation related protein 53 regulating kinase B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-38527341-2	chr15	38527241	38527441	+	803.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8075.0	NM_018745	54375.0	Mm.250214	NM_018745	ENSMUSG00000037458	Azin1	1700085L02Rik|AZI|Oazi|Oazin	antizyme inhibitor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-38657841-1	chr16	38657741	38657941	+	559.0	f1_c57bl6.idr	intron (NM_020260, intron 1 of 11)	intron (NM_020260, intron 1 of 11)	55194.0	NM_020260	12549.0	Mm.370848	NM_020260	ENSMUSG00000022799	Arhgap31	5830477L08Rik|AU041750|Cdgap|D330026I07Rik	Rho GTPase activating protein 31	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-34127876-5	chr10	34127735	34127935	+	946.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175449, exon 1 of 2)	exon (NM_175449, exon 1 of 2)	137.0	NM_175449	215900.0	Mm.34479	NM_175449	ENSMUSG00000046031	Fam26f	A630077B13Rik|Calhm6	family with sequence similarity 26, member F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-47316543-2	chr4	47316443	47316643	+	673.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36679.0	NM_001312868	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-52743702-2	chr2	52743602	52743802	+	553.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-1553.0	NM_019667	56324.0	Mm.263639	NM_019667	ENSMUSG00000055371	Stam2	1200004O12Rik|5730456G07Rik|BB145015|Hbp	signal transducing adaptor molecule (SH3 domain and ITAM motif) 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114679775-4	chr11	114679703	114679903	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053273, intron 1 of 13)	intron (NM_053273, intron 1 of 13)	4335.0	NM_053273	117160.0	Mm.271934	NM_053273	ENSMUSG00000034714	Ttyh2	1110001A03Rik	tweety family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64341863-3	chr5	64341756	64341956	+	820.222229	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	intron (NM_001289514, intron 17 of 18)	L1ME4c|LINE|L1	111499.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	3.35599686607617	2.33629331794059	2.64349215950079	3.26889823562007	2.72334330117737	1.44349247407255	2.54809139944923	1.35831367388796	-1.55820364256597	0.0802319298851517	0.431411425797154
Merged-chr2-150668051-5	chr2	150667925	150668125	+	858.1866460000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_080575, exon 1 of 14)	exon (NM_080575, exon 1 of 14)	215.0	NM_080575	68738.0	Mm.7044	NM_080575	ENSMUSG00000027452	Acss1	1110032O15Rik|AI788978|Acas2|Acas2l|AceCS2	acyl-CoA synthetase short-chain family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-6737896-2	chr17	6737796	6737996	+	692.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_009510)	TTS (NM_009510)	32066.0	NM_183368	83672.0	Mm.442201	NM_031395	ENSMUSG00000041831	Sytl3	A430092N21|Slp3|Slp3-a|Slp3-b|mFLJ00307	synaptotagmin-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-118520122-4	chr2	118519999	118520199	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24488.0	NR_138603	171543.0	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	3.47255128678731	3.80798029152825	3.00348187110547	2.35760316963192	3.43905024824236	3.13334258273844	3.77791487607456	3.13901285694271	0.212284805056998	0.729763042201604	0.998431161219273
Merged-chr16-64836326-2	chr16	64836226	64836426	+	984.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347245, intron 1 of 8)	intron (NM_001347245, intron 1 of 8)	15397.0	NM_001347245	72020.0	Mm.25960	NM_028059	ENSMUSG00000047141	Zfp654	1600021C16Rik|1810008K20Rik|433036|Gm5488|Znf654	zinc finger protein 654	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-58722470-6	chr1	58722359	58722559	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355056, intron 1 of 8)	intron (NM_001355056, intron 1 of 8)	-8093.0	NM_001293805	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	4.07822904820803	2.92675505006802	3.38608869909869	3.29099684694952	3.69475097323422	3.21333449868448	3.86344339564027	3.39409337873056	0.095137922221078	0.864537608442407	0.998431161219273
Merged-chr1-52648313-4	chr1	52648229	52648429	+	959.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_024590, intron 7 of 8)	intron (NR_024590, intron 7 of 8)	17624.0	NM_001142647	227094.0	Mm.83541	NM_172654	ENSMUSG00000043015	Nemp2	5330401P04Rik|9830163O08|Tmem194b	nuclear envelope integral membrane protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-48457714-2	chr2	48457614	48457814	+	581.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-356395.0	NM_007396	11480.0	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116644124-2	chr11	116644024	116644224	+	668.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10189.0	NM_030206	114886.0	Mm.34598	NM_030206	ENSMUSG00000020810	Cygb	3110001K20Rik|HGb|Staap	cytoglobin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-86343673-3	chr3	86343560	86343760	+	639.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077687, intron 22 of 50)	Lx7|LINE|L1	118970.0	NM_001077688	80877.0	Mm.439825	NM_030695	ENSMUSG00000028080	Lrba	C80285|D3Ertd775e|Lab300|Lba	LPS-responsive beige-like anchor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-21079352-4	chr1	21079254	21079454	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177409)	promoter-TSS (NM_177409)	-129.0	NM_177409	170829.0	Mm.185680	NM_177409	ENSMUSG00000041779	Tram2	C330003D03Rik	translocating chain-associating membrane protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-107056755-4	chr8	107056645	107056845	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164472)	promoter-TSS (NM_001164472)	-8.0	NM_139229	97484.0	Mm.288641	NM_139229	ENSMUSG00000031916	Cog8	BB235941|C87832	component of oligomeric golgi complex 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-116031997-4	chr7	116031916	116032116	+	722.020813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_152104)	promoter-TSS (NR_152104)	37.0	NR_152104	68469.0	Mm.435492	NR_152104		Sox6os	1110006G14Rik	SRY (sex determining region Y)-box 6, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56997233-4	chr17	56997140	56997340	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025538)	promoter-TSS (NM_025538)	-99.0	NM_025538	66400.0	Mm.196150	NM_025538	ENSMUSG00000002661	Alkbh7	2310045B01Rik|2510008E23Rik|Abh7|Spata11	alkB homolog 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126830104-3	chr8	126829998	126830198	+	838.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18922.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-40676736-2	chr19	40676636	40676836	+	831.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009848, intron 1 of 9)	intron (NM_009848, intron 1 of 9)	16966.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-60848228-3	chr18	60848150	60848350	+	605.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011552, intron 1 of 24)	B1_Mus1|SINE|Alu	714.0	NM_011552	21453.0	Mm.486251	NM_011552	ENSMUSG00000024613	Tcof1	AA408847|AW209012|treacle	treacle ribosome biogenesis factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-118200045-3	chr2	118199918	118200118	+	644.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56948.0	NM_027759	71313.0	Mm.85046	NM_027759	ENSMUSG00000027344	Fsip1	1700012M13Rik|4933432K11Rik	fibrous sheath-interacting protein 1	protein-coding	2.99745979506847	3.95211357346034	2.94923057660712	2.971161690769	3.10727549499079	3.72272353303781	1.65730780882536	3.74337479537465	-0.0151881409686687	0.982992976110603	0.998431161219273
Merged-chr15-34094494-2	chr15	34094394	34094594	+	734.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357925, intron 1 of 10)	B1_Mus1|SINE|Alu	11775.0	NM_001357925	67154.0	Mm.130883	NM_026002	ENSMUSG00000022255	Mtdh	2610103J23Rik|3D3|3D3/Lyric|AEG-1|AV353288|D8Bwg1112e|Lyric	metadherin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-9775888-2	chr17	9775788	9775988	+	674.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045433)	promoter-TSS (NR_045433)	-22.0	NR_045433	71092.0	Mm.243827	NR_045433		4930452A19Rik	4933424P20Rik	RIKEN cDNA 4930452A19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-31292966-2	chr5	31292866	31293066	+	578.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_022424, exon 7 of 7)	3' UTR (NM_022424, exon 7 of 7)	-1852.0	NM_026298	67661.0	Mm.293023	NM_026298	ENSMUSG00000038564	Ift172	4930553F24Rik|Slb|avc1|wim	intraflagellar transport 172	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70546377-1	chr14	70546277	70546477	+	572.666687	f1_c57bl6.idr	intron (NM_180588, intron 1 of 7)	intron (NM_180588, intron 1 of 7)	1126.0	NM_180588	72549.0	Mm.46742	NM_180588	ENSMUSG00000033589	Reep4	2700029E10Rik	receptor accessory protein 4	protein-coding	0.770993928267763	0.215958780362941	0.987618998664855	0.204053302786655	0.590811213106449	0.21746878568219	0.396511911624407	0.204961633298998	-1.50271559650252	0.444946191342373	1
Merged-chr10-63177447-4	chr10	63177341	63177541	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_182992, intron 2 of 19)	intron (NM_182992, intron 2 of 19)	26511.0	NM_182992	68802.0	Mm.259767	NM_182992	ENSMUSG00000020067	Mypn	1110056A04Rik|9830112J03|AI853556|mKIAA4170	myopalladin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-11218318-4	chr2	11218216	11218416	+	644.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008859, intron 1 of 17)	intron (NM_008859, intron 1 of 17)	45934.0	NM_008859	18761.0	Mm.329993	NM_008859	ENSMUSG00000026778	Prkcq	A130035A12Rik|AW494342|PKC-0|PKC-theta|PKCtheta|Pkcq	protein kinase C, theta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-83899917-6	chr8	83899837	83900037	+	955.5238039999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181039)	promoter-TSS (NM_181039)	-161.0	NM_181039	330814.0	Mm.260733	NM_181039	ENSMUSG00000013033	Adgrl1	2900070I05Rik|AI182398|CLIBA|Lec2|Lphn1|mKIAA0821	adhesion G protein-coupled receptor L1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124713707-2	chr6	124713607	124713807	+	643.3000490000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_007531, intron 3 of 8)	intron (NM_007531, intron 3 of 8)	1418.0	NM_007531	12034.0	Mm.36241	NM_007531	ENSMUSG00000004264	Phb2	AU044498|BAP|Bap37|Bcap37|REA	prohibitin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-24871422-1	chr19	24871322	24871522	+	563.0	f0_balb.idr	Intergenic	Intergenic	-9580.0	NM_175013	226041.0	Mm.105222	NM_175013	ENSMUSG00000041731	Pgm5	4833423B07|9530034F03Rik|D830025G17|aciculin	phosphoglucomutase 5	protein-coding	1.70848124501123	1.02686528950922	1.97795948331439	2.40056652533795	1.16725003639459	1.82154712780601	1.01005258030334	1.69768545936477	-1.209025252422	0.313755618518039	0.815402146782548
Merged-chr9-106453624-4	chr9	106453507	106453707	+	955.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021567)	promoter-TSS (NM_021567)	-231.0	NM_021567	59092.0	Mm.286394	NM_021567	ENSMUSG00000023495	Pcbp4	1200003L19Rik|AlphaCP-4	poly(rC) binding protein 4	protein-coding	3.16749441409491	1.81167328427535	3.36451974814393	2.63499648411364	2.29094241358645	2.42938268583498	3.18547335497258	1.92910591556017	-0.625633490618291	0.438663687935444	0.909100689978603
Merged-chr12-55492739-4	chr12	55492625	55492825	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010907)	promoter-TSS (NM_010907)	-78.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-102279500-4	chr15	102279431	102279631	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134100)	promoter-TSS (NM_134100)	75.0	NM_134100	106073.0	Mm.287740	NM_134100	ENSMUSG00000045665	Mfsd5	AA409375|AW556797|D15Mgi27	major facilitator superfamily domain containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27925769-4	chr17	27925678	27925878	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181413, intron 1 of 24)	intron (NM_181413, intron 1 of 24)	16472.0	NM_181413	224650.0	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	0.43275226873239	0.178607648821042	0.172118181877303	0.980121689975505	0.159983806383569	0.180067990160331	0.646768992928552	0.483489084747831	-0.684417649846815	0.729365094716853	1
Merged-chr9-40798611-3	chr9	40798609	40798809	+	843.93335	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-2564.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-73845713-2	chr13	73845613	73845813	+	656.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347535, intron 2 of 8)	intron (NM_001347535, intron 2 of 8)	1918.0	NM_028186	72293.0	Mm.45506	NM_028186	ENSMUSG00000021567	Nkd2	2210403L10Rik|AW212591|mNkd2	naked cuticle 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-54686564-2	chr13	54686464	54686664	+	972.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_027396, intron 1 of 10)	intron (NR_027396, intron 1 of 10)	1244.0	NM_001146025	105239.0	Mm.25366	NM_134064	ENSMUSG00000034928	Rnf44	AI854545|mKIAA1100	ring finger protein 44	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-87659423-4	chr1	87659313	87659513	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110192, intron 2 of 26)	intron (NM_001110192, intron 2 of 26)	39101.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-31763467-2	chr19	31763367	31763567	+	623.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013833, intron 1 of 17)	intron (NM_001013833, intron 1 of 17)	1566.0	NM_001013833	19091.0	Mm.381170	NM_011160	ENSMUSG00000052920	Prkg1	AW125416|CGKI|Gm19690|Prkg1b|Prkgr1b	protein kinase, cGMP-dependent, type I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-11553063-4	chr2	11552948	11553148	+	952.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177758, intron 1 of 14)	intron (NM_001177758, intron 1 of 14)	881.0	NM_001177758	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-98663861-4	chr2	98663743	98663943	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GSAT_MM|Satellite|Satellite	1196186.0	NM_178725	241568.0	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-20263824-2	chr11	20263724	20263924	+	642.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14400.0	NM_172260	216543.0	Mm.260314	NM_172260	ENSMUSG00000044066	Cep68	6030463E10Rik|AI481761|BC027174|Kiaa0582	centrosomal protein 68	protein-coding	0.120980175120638	-0.0931302663388199	0.291678736069068	-0.0992547634037391	0.126684395560706	-0.0923413030253395	0.299741549551563	-0.0987935275770274	0.0411516003055829	0.985164602345305	1
Merged-chr18-35041265-2	chr18	35041166	35041366	+	595.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(GGA)n|Simple_repeat|Simple_repeat	-77646.0	NM_009818	12385.0	Mm.18962	NM_009818	ENSMUSG00000037815	Ctnna1	2010010M04Rik|AA517462|AI988031|Catna1	catenin (cadherin associated protein), alpha 1	protein-coding	0.0701655353777942	0.974903103625174	0.0909635090981961	0.083250390532892	0.0721351029176917	1.29664763897054	0.0931462750804382	0.298187850508929	0.875279231931355	0.668044995253121	1
Merged-chr15-59531327-1	chr15	59531227	59531427	+	540.0	f1_c57bl6.idr	intron (NM_026746, intron 4 of 6)	intron (NM_026746, intron 4 of 6)	-117327.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-86985286-2	chr16	86985186	86985386	+	620.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4A|LINE|L1	143153.0	NR_153792	102635567.0	Mm.233725	NR_153792		Gm32865	-	predicted gene, 32865	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-21746445-2	chr14	21746345	21746545	+	775.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001007268, exon 3 of 8)	exon (NM_001007268, exon 3 of 8)	2177.0	NM_001007268	27389.0	Mm.390674	NM_013849	ENSMUSG00000021768	Dusp13	DUSP13A|DUSP13B|Gm1203|LMW-DSP6|MDSP|TMDP|TS-DSP6	dual specificity phosphatase 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-52979241-2	chr2	52979141	52979341	+	718.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	121373.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25283822-4	chr7	25283723	25283923	+	974.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027882, intron 1 of 19)	intron (NM_027882, intron 1 of 19)	1644.0	NM_027882	71722.0	Mm.28833	NM_027882	ENSMUSG00000005442	Cic	1200010B10Rik|mKIAA0306	capicua transcriptional repressor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-43487487-2	chr15	43487387	43487587	+	547.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025736, intron 1 of 10)	RLTR13B1|LTR|ERVK	10258.0	NM_025736	66736.0	Mm.244512	NM_025736	ENSMUSG00000022337	Emc2	4921531G14Rik|AV060620|AW209495|Ttc35	ER membrane protein complex subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165388217-4	chr2	165388062	165388262	+	937.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178411)	promoter-TSS (NM_178411)	97.0	NM_178411	228876.0	Mm.26316	NM_178411	ENSMUSG00000017667	Zfp334	D2Ertd535e	zinc finger protein 334	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-70599583-2	chr10	70599483	70599683	+	736.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178621)	promoter-TSS (NM_178621)	-292.0	NM_178621	70911.0	Mm.19825	NM_178621	ENSMUSG00000037747	Phyhipl	4921522K17Rik|AI267048	phytanoyl-CoA hydroxylase interacting protein-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-103146858-2	chr15	103146758	103146958	+	827.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045743)	promoter-TSS (NR_045743)	-30.0	NR_045743	432989.0	Mm.383979	NR_045743	ENSMUSG00000097003	D930007P13Rik	-	Riken cDNA D930007P13 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80846940-4	chr7	80846834	80847034	+	942.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR31C_MM|LTR|ERVK	-15174.0	NM_009553	22691.0	Mm.358645	NM_009553	ENSMUSG00000038797	Zscan2	Zfp-29|Zfp29	zinc finger and SCAN domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-79821672-4	chr7	79821578	79821778	+	951.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008486)	TTS (NM_008486)	10951.0	NM_008589	17293.0	Mm.31472	NM_008589	ENSMUSG00000030543	Mesp2	bHLHc6	mesoderm posterior 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-73506442-3	chr15	73506333	73506533	+	654.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6127.0	NR_152151	105841.0	Mm.322557	NM_001081066	ENSMUSG00000036661	Dennd3	AI447457|E030003N15Rik	DENN/MADD domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-91364747-3	chr9	91364700	91364900	+	801.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009573, exon 1 of 3)	exon (NM_009573, exon 1 of 3)	999.0	NM_009573	22771.0	Mm.335350	NM_009573	ENSMUSG00000032368	Zic1	ZIC|ZNF201	zinc finger protein of the cerebellum 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-179232187-4	chr1	179232076	179232276	+	688.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027188, intron 5 of 11)	intron (NM_027188, intron 5 of 11)	285865.0	NM_027188	69726.0	Mm.222338	NM_027188	ENSMUSG00000055067	Smyd3	2410008A19Rik|Zmynd1	SET and MYND domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-15215005-3	chr10	15214905	15215105	+	999.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE-int|LTR|ERVL-MaLR	454716.0	NM_008703	18101.0	Mm.487342	NM_008703	ENSMUSG00000019865	Nmbr	BB182387	neuromedin B receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-119542304-2	chr14	119542204	119542404	+	860.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_015820, intron 1 of 1)	ORR1D1|LTR|ERVL-MaLR	-206923.0	NR_045621	75432.0	Mm.443277	NR_045621	ENSMUSG00000100274	1700006F04Rik	-	RIKEN cDNA 1700006F04 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-25472706-4	chr14	25472624	25472824	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	13539.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-33438394-2	chr5	33438294	33438494	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4304.0	NM_011320	672284.0		NM_011320	ENSMUSG00000029112	Nkx1-1	Nkx-1.1|Sax2	NK1 homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-78043430-4	chr13	78043323	78043523	+	808.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163420, intron 8 of 8)	intron (NM_001163420, intron 8 of 8)	18521.0	NM_029315	75507.0	Mm.443255	NM_029315	ENSMUSG00000093668	Pou5f2	1700013G10Rik|SPRM-1|Sprm1	POU domain class 5, transcription factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-149235268-4	chr5	149235159	149235359	+	975.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F|LTR|ERVL-MaLR	-29745.0	NM_001308462	11690.0	Mm.19844	NM_009663	ENSMUSG00000060063	Alox5ap	Flap	arachidonate 5-lipoxygenase activating protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30347981-3	chr7	30347898	30348098	+	794.755554	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	14774.0	NM_175478	233067.0	Mm.23157	NM_175478	ENSMUSG00000036957	Lrfn3	A530045B06Rik|SALM4	leucine rich repeat and fibronectin type III domain containing 3	protein-coding	2.30635618361626	1.91111571327922	1.49921944686035	2.34888402171208	1.85685947062308	1.54870872943039	2.00571264144123	2.36103503243727	-0.229172399626956	0.812507182186167	0.998431161219273
Merged-chr9-110716933-2	chr9	110716833	110717033	+	695.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25677.0	NM_001083936	19228.0	Mm.3542	NM_011199	ENSMUSG00000032492	Pth1r	PPR|Pthr|Pthr1	parathyroid hormone 1 receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-49209262-2	chr13	49209162	49209362	+	591.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026738, intron 1 of 5)	Lx2A1|LINE|L1	6764.0	NM_026738	68480.0	Mm.3336	NM_026738	ENSMUSG00000037960	Card19	1110007C09Rik|AI851695|Bincard	caspase recruitment domain family, member 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-134678242-4	chr5	134678123	134678323	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001305875)	promoter-TSS (NM_001305875)	25.0	NM_001305875	16885.0	Mm.15409	NM_010717	ENSMUSG00000029674	Limk1	KIZ-1|LIMK-1|Limk	LIM-domain containing, protein kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-16994688-2	chr12	16994588	16994788	+	770.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172574, intron 4 of 6)	intron (NM_172574, intron 4 of 6)	5430.0	NM_172574	217430.0	Mm.379451	NM_172574	ENSMUSG00000045679	Pqlc3	C78076|E030024M05Rik	PQ loop repeat containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-8988158-2	chr8	8988058	8988258	+	841.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	144130.0	NR_045854	71249.0	Mm.158635	NR_045854	ENSMUSG00000108848	4933430N04Rik	-	RIKEN cDNA 4933430N04 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-113769256-2	chr5	113769156	113769356	+	567.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_151532, intron 1 of 16)	RSINE1|SINE|B4	3144.0	NR_151532	53890.0	Mm.29594	NM_016926	ENSMUSG00000018974	Sart3	AU045857|mKIAA0156	squamous cell carcinoma antigen recognized by T cells 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-86729127-2	chr10	86729027	86729227	+	655.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001003910, intron 4 of 15)	B2_Mm2|SINE|B2	16362.0	NM_153595	103220.0	Mm.440762	NM_153595	ENSMUSG00000044937	Ttc41	AI449705|AU041509|Gnn	tetratricopeptide repeat domain 41	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-45245610-4	chr9	45245452	45245652	+	951.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198971, intron 4 of 4)	intron (NM_001198971, intron 4 of 4)	21155.0	NR_106054	102466803.0		NR_106054	ENSMUSG00000098361	Mir7086	Gm27643|mmu-mir-7086	microRNA 7086	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-14901670-1	chr6	14901570	14901770	+	586.0	f0_balb.idr	5' UTR (NM_053242, exon 1 of 19)	5' UTR (NM_053242, exon 1 of 19)	321.0	NM_053242	114142.0	Mm.332919	NM_053242	ENSMUSG00000029563	Foxp2	2810043D05Rik|AI449000|CAG-16|D0Kist7	forkhead box P2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152608126-2	chr1	152608026	152608226	+	553.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346119, intron 2 of 17)	intron (NM_001346119, intron 2 of 17)	17091.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-54692022-2	chr13	54691922	54692122	+	746.125	f1_balb.idr|f1_c57bl6.idr	intron (NR_027396, intron 1 of 10)	intron (NR_027396, intron 1 of 10)	1938.0	NR_027395	105239.0	Mm.25366	NM_134064	ENSMUSG00000034928	Rnf44	AI854545|mKIAA1100	ring finger protein 44	protein-coding	1.76933381644887	1.76667786431003	0.99621253327322	1.19395449084403	1.87499163003249	2.12638287963544	1.71724266097548	0.983620776866534	0.818560532025296	0.504213765495798	0.940284522133039
Merged-chr13-92267279-2	chr13	92267179	92267379	+	621.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001311120, intron 15 of 23)	Lx8|LINE|L1	-87504.0	NM_010049	13361.0	Mm.23695	NM_010049	ENSMUSG00000021707	Dhfr	8430436I03Rik|AA607882|AI662710|AW555094	dihydrofolate reductase	protein-coding	1.56309457495382	1.87839670829415	1.02746537470665	1.5222332019382	1.32773989221909	1.89317233743655	1.82646630426358	1.38587675448066	0.324559417931496	0.777162798829034	0.998431161219273
Merged-chr2-45101985-2	chr2	45101885	45102085	+	821.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_149354, intron 2 of 2)	intron (NR_149354, intron 2 of 2)	8292.0	NM_001289521	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-17733859-3	chr18	17733767	17733967	+	937.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-152877.0	NR_045374	75162.0	Mm.60874	NR_045374		4930545E07Rik	-	RIKEN cDNA 4930545E07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-38701979-4	chr16	38701874	38702074	+	983.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020260, intron 1 of 11)	intron (NM_020260, intron 1 of 11)	11061.0	NM_020260	12549.0	Mm.370848	NM_020260	ENSMUSG00000022799	Arhgap31	5830477L08Rik|AU041750|Cdgap|D330026I07Rik	Rho GTPase activating protein 31	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27414564-3	chr2	27414450	27414650	+	803.422241	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009500, intron 1 of 27)	intron (NM_009500, intron 1 of 27)	13058.0	NR_133905	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-9001456-2	chr5	9001356	9001556	+	545.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A2|LTR|ERVL-MaLR	-4310.0	NM_023733	74114.0	Mm.28197	NM_023733	ENSMUSG00000003623	Crot	1200003H03Rik	carnitine O-octanoyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-68658123-2	chr11	68658023	68658223	+	868.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33792.0	NM_175260	77579.0	Mm.218233	NM_175260	ENSMUSG00000020900	Myh10	5730504C04Rik|9330167F11Rik|Fltn|Myhn-2|Myhn2|NMHC II-B|NMHC-B|NMHCII-B|NMMHC II-b|NMMHC-B|NMMHC-IIB|SMemb|mKIAA3005	myosin, heavy polypeptide 10, non-muscle	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-99433352-6	chr13	99433237	99433437	+	992.611084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008634, exon 5 of 7)	exon (NM_008634, exon 5 of 7)	-20511.0	NR_015515	320893.0	Mm.470842	NR_015515		6430562O15Rik	-	RIKEN cDNA 6430562O15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-18248877-4	chr16	18248773	18248973	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011239)	promoter-TSS (NM_011239)	-10.0	NM_001357146	15547.0	Mm.271798	NM_008307	ENSMUSG00000022721	Trmt2a	Htf9c	TRM2 tRNA methyltransferase 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-29787614-4	chr11	29787501	29787701	+	945.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146016, intron 24 of 41)	intron (NM_146016, intron 24 of 41)	38067.0	NM_176829	216622.0	Mm.443260	NM_176829	ENSMUSG00000078157	4931440F15Rik	Fem1ab	RIKEN cDNA 4931440F15 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-111771525-4	chr10	111771423	111771623	+	976.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	102853.0	NR_046029	629206.0	Mm.391444	NR_046029	ENSMUSG00000112533	Gm20758	-	predicted gene, 20758	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-85370862-4	chr6	85370753	85370953	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003955, intron 1 of 5)	intron (NM_001003955, intron 1 of 5)	3781.0	NM_177466	52055.0	Mm.220334	NM_177466	ENSMUSG00000051343	Rab11fip5	9130206P09Rik|C75969|D6Ertd32e|GAF1|RIP11	RAB11 family interacting protein 5 (class I)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128746521-2	chr10	128746421	128746621	+	738.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1358.0	NM_030100	78428.0	Mm.27358	NM_030100	ENSMUSG00000064030	Pym1	A030010B05Rik|Pym|Wibg	PYM homolog 1, exon junction complex associated factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-12754772-4	chr17	12754667	12754867	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010515, intron 1 of 47)	intron (NM_010515, intron 1 of 47)	13456.0	NR_027784	104103.0	Mm.26553	NR_002853	ENSMUSG00000078247	Airn	2810051F02Rik|2810434M15Rik|AI256653|AI597500|AW049873|Air|B930018I07Rik|D17Ertd663e|IGF2RAS	antisense Igf2r RNA	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-128209903-4	chr7	128209806	128210006	+	940.908325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3540.0	NM_009943	12862.0	Mm.43824	NM_009943	ENSMUSG00000030785	Cox6a2	CoxVIaH|VIaH	cytochrome c oxidase subunit VIa polypeptide 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-164825940-2	chr2	164825840	164826040	+	845.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_028028, exon 2 of 2)	exon (NM_028028, exon 2 of 2)	2594.0	NM_029370	75642.0	Mm.159541	NM_029370	ENSMUSG00000017767	Spata25	1700020C07Rik|Tsg23	spermatogenesis associated 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-131222715-4	chr2	131222606	131222806	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M5|LINE|L1	-11357.0	NM_001206383	228607.0	Mm.287226	NM_144888	ENSMUSG00000037523	Mavs	D430028G21Rik|IPS-1|Visa|cardif	mitochondrial antiviral signaling protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-94060143-3	chr6	94060049	94060249	+	574.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029850, intron 1 of 23)	intron (NM_001029850, intron 1 of 23)	-146459.0	NM_001083320	14924.0	Mm.217216	NM_010367	ENSMUSG00000045095	Magi1	AIP3|BAP1|Baiap1|Gukmi1|MAGI1c|Magi-1|TNRC19|WWP3|mKIAA4129	membrane associated guanylate kinase, WW and PDZ domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-123323493-3	chr8	123323333	123323533	+	802.266663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4857.0	NM_016925	14087.0	Mm.6536	NM_016925	ENSMUSG00000032815	Fanca	AW208693|FACA	Fanconi anemia, complementation group A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-120102368-4	chr7	120102262	120102462	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145586)	promoter-TSS (NM_145586)	-64.0	NM_145586	233806.0	Mm.257952	NM_145586	ENSMUSG00000030917	Tmem159	8430420C20Rik	transmembrane protein 159	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94054485-1	chr10	94054385	94054585	+	795.0	f0_balb.idr	intron (NM_053072, intron 2 of 20)	intron (NM_053072, intron 2 of 20)	18484.0	NM_053072	13998.0	Mm.269596	NM_053072	ENSMUSG00000020021	Fgd6	AA123052|Etohd4|ZFYVE24	FYVE, RhoGEF and PH domain containing 6	protein-coding	-0.506579379625974	-0.49849281176627	-0.501175135787751	-0.242978192184328	-0.506083396939089	-0.186287890890675	-0.500586289713156	-0.134840694319281	1.40952650905419	0.598086815106089	1
Merged-chr12-44210210-4	chr12	44210097	44210297	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013760)	promoter-TSS (NM_013760)	-116.0	NR_049203	100885842.0		NR_049203	ENSMUSG00000093618	Mir5627	Gm23684|mir-5627|mmu-mir-5627	microRNA 5627	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-108407627-4	chr6	108407519	108407719	+	937.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 35 of 61)	intron (NM_010585, intron 35 of 61)	-82124.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-119836228-3	chr8	119836017	119836217	+	710.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028071, intron 2 of 3)	intron (NM_028071, intron 2 of 3)	4462.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-24702554-3	chr1	24702519	24702719	+	925.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026719, intron 3 of 15)	intron (NM_026719, intron 3 of 15)	23701.0	NM_001310483	68421.0	Mm.336563	NM_026719	ENSMUSG00000073725	Lmbrd1	0910001K20Rik|AV347960	LMBR1 domain containing 1	protein-coding	0.13494678350135	0.153763809413648	0.147609861823262	0.142855059301644	0.868503428527626	0.353552771971509	0.483824068667781	0.686709780392818	4.17012360798455	0.0339656256059589	1
Merged-chr6-8337086-3	chr6	8337004	8337204	+	739.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302354, intron 2 of 3)	intron (NM_001302354, intron 2 of 3)	77816.0	NM_001302353	100036521.0	Mm.446106	NM_001302353	ENSMUSG00000089862	Umad1	Gm16039	UMAP1-MVP12 associated (UMA) domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118763029-4	chr9	118762984	118763184	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 1 of 13)	intron (NM_001113514, intron 1 of 13)	51392.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-107931828-4	chr3	107931730	107931930	+	999.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026672)	promoter-TSS (NM_026672)	-13.0	NM_026672	68312.0	Mm.458189	NM_026672	ENSMUSG00000004035	Gstm7	0610005A07Rik|AI894236|Cd203c	glutathione S-transferase, mu 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-28422393-2	chr6	28422293	28422493	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028900)	promoter-TSS (NM_028900)	-669.0	NM_028900	74375.0	Mm.332950	NM_028900	ENSMUSG00000029708	Gcc1	4932417P04Rik	golgi coiled coil 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-94159443-4	chr6	94159323	94159523	+	929.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_130996, intron 1 of 1)	intron (NR_130996, intron 1 of 1)	78019.0	NR_130996	78178.0	Mm.452749	NR_130996	ENSMUSG00000045095	4930511A08Rik	-	RIKEN cDNA 4930511A08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-89830539-3	chr16	89830468	89830668	+	800.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009384, intron 15 of 27)	intron (NM_009384, intron 15 of 27)	-12216.0	NM_001145887	21844.0	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-80554709-4	chr18	80554525	80554725	+	999.3214109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10079.0	NR_028424	100039348.0	Mm.254722	NR_028424		Gm2176	A430076E10Rik	glucosamine-6-phosphate deaminase 1 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-147123042-2	chr4	147122942	147123142	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4A|LINE|L1	-52824.0	NM_001039209	195531.0	Mm.270762	NM_001039209	ENSMUSG00000078496	Zfp982	Gm13152	zinc finger protein 982	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-97661844-8	chr1	97661666	97661866	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355072)	promoter-TSS (NM_001355072)	-90.0	NM_001355072	52392.0	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-14815262-4	chr8	14815146	14815346	+	920.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172910, intron 9 of 15)	intron (NM_172910, intron 9 of 15)	-73290.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	3.05676438307394	3.41237024750343	2.96252544118378	3.13983032737856	2.75824067877282	2.86023837600278	2.63968559244167	2.42154715027008	-0.880173033998912	0.174761799552973	0.64338916082288
Merged-chr14-75064801-4	chr14	75064706	75064906	+	812.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030568, intron 2 of 3)	intron (NR_030568, intron 2 of 3)	48779.0	NM_198642	271221.0	Mm.320280	NM_198642	ENSMUSG00000034959	Rubcnl	5031414D18Rik|Gm744|Gm911|Kiaa0226l	RUN and cysteine rich domain containing beclin 1 interacting protein like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-107866603-4	chr5	107866512	107866712	+	964.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007964, intron 1 of 17)	HAL1|LINE|L1	8495.0	NM_007964	14020.0	Mm.35796	NM_007964	ENSMUSG00000011831	Evi5	NB4S	ecotropic viral integration site 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-17234746-3	chr16	17234651	17234851	+	934.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178922, intron 1 of 2)	intron (NM_178922, intron 1 of 2)	1164.0	NM_178922	58180.0	Mm.261602	NM_178922	ENSMUSG00000050240	Hic2	AA409108|HRG22|mKIAA1020	hypermethylated in cancer 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-73155320-2	chr15	73155220	73155420	+	915.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153178, intron 1 of 18)	intron (NM_153178, intron 1 of 18)	29627.0	NM_153178	239528.0	Mm.23095	NM_153178	ENSMUSG00000036698	Ago2	1110029L17Rik|2310051F07Rik|AI225898|AL022874|AW546247|Eif2c2|Gerp95|Gm10365|mKIAA4215	argonaute RISC catalytic subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180901263-4	chr1	180901162	180901362	+	808.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3012.0	NM_133705	69051.0	Mm.274180	NM_133705	ENSMUSG00000026520	Pycr2	1810018M05Rik|P5cr2	pyrroline-5-carboxylate reductase family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120784232-4	chr11	120784123	120784323	+	961.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009053)	promoter-TSS (NM_009053)	-19.0	NM_009053	19719.0	Mm.871	NM_009053	ENSMUSG00000025158	Rfng	-	RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101642509-2	chr11	101642409	101642609	+	811.916626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14560.0	NM_025654	66599.0	Mm.41449	NM_025654	ENSMUSG00000010362	Rdm1	2410008M22Rik|AW212028|Rad52b	RAD52 motif 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-66005019-4	chr5	66004909	66005109	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027961)	promoter-TSS (NR_027961)	-724.0	NR_027961	231253.0	Mm.436542	NM_177679	ENSMUSG00000054598	9130230L23Rik	-	RIKEN cDNA 9130230L23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-76238798-3	chr18	76238694	76238894	+	908.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2907.0	NM_010754	17126.0	Mm.152699	NM_010754	ENSMUSG00000024563	Smad2	7120426M23Rik|Madh2|Madr2|Smad-2|mMad2	SMAD family member 2	protein-coding	3.06113425347271	3.7672022470812	2.45575182828737	2.09563581789331	1.14717310658501	2.91856306888566	1.80257265748752	1.21304265361107	-1.96309466141985	0.0429896374824043	0.297228008363746
Merged-chr3-82999237-2	chr3	82999142	82999342	+	629.333374	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-8482.0	NM_133862	99571.0	Mm.16422	NM_133862	ENSMUSG00000033860	Fgg	3010002H13Rik|AI256424	fibrinogen gamma chain	protein-coding	2.09499265668132	2.8053589242648	1.92391128281939	2.69462683326677	1.77778960330853	1.1588499665706	1.38956002595606	1.10513026590973	-2.95025037098778	0.00700957279833753	0.0851853138159102
Merged-chr10-91080740-4	chr10	91080641	91080841	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042558, intron 1 of 26)	intron (NM_001042558, intron 1 of 26)	2002.0	NM_001042558	11783.0	Mm.220289	NM_009684	ENSMUSG00000019979	Apaf1	6230400I06Rik|Apaf-1|Apaf1l|fog|mKIAA0413	apoptotic peptidase activating factor 1	protein-coding	5.04836750304439	4.41489937730409	3.4463769978483	4.95246719487595	4.82837905299021	4.99986535394611	4.76789202134106	4.39859415700512	0.19168590408695	0.643129205761189	0.982823301118608
Merged-chr14-50824316-4	chr14	50824173	50824373	+	979.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009351, exon 55 of 55)	exon (NM_009351, exon 55 of 55)	16357.0	NM_009632	11546.0	Mm.281482	NM_009632	ENSMUSG00000036023	Parp2	ADPRT-2|ARTD2|Adprt2|Adprtl2|Aspartl2|C78626|PARP-2|mPARP-2|pADPRT-2	poly (ADP-ribose) polymerase family, member 2	protein-coding	4.22869166690994	3.88450204777968	4.6967823588389	4.39495988050117	3.25124830340105	3.10458062738864	1.75756961739725	3.51171073962366	-1.83487877647711	0.00101716940973205	0.0197704313567687
Merged-chr19-46041915-3	chr19	46041857	46042057	+	867.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113408, intron 1 of 10)	intron (NM_001113408, intron 1 of 10)	-2336.0	NM_010697	16825.0	Mm.327442	NM_010697	ENSMUSG00000025223	Ldb1	CLIM2|NLI	LIM domain binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-20452614-1	chr1	20452514	20452714	+	757.0	f0_balb.idr	intron (NM_153179, intron 35 of 66)	intron (NM_153179, intron 35 of 66)	96160.0	NR_045734	75028.0	Mm.417820	NR_045734	ENSMUSG00000089914	4930486I03Rik	-	RIKEN cDNA 4930486I03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-60246257-1	chr5	60246157	60246357	+	686.0	f1_balb.idr	Intergenic	Lx3C|LINE|L1	-260255.0	NR_040682	71057.0	Mm.50817	NR_040682	ENSMUSG00000106013	4933402J10Rik	-	RIKEN cDNA 4933402J10 gene	ncRNA	-0.251232761459771	-0.233222475719527	-0.239076278126872	-0.243623216496818	-0.250095826835245	0.567595788064635	0.508534836666534	-0.242826915968187	3.98290212197426	0.101885115045999	1
Merged-chr3-106493984-1	chr3	106493884	106494084	+	553.0	f1_c57bl6.idr	intron (NM_001093754, intron 7 of 11)	intron (NM_001093754, intron 7 of 11)	7944.0	NM_028110	72121.0	Mm.14816	NM_028110	ENSMUSG00000027901	Dennd2d	2010308M01Rik|AI451421	DENN/MADD domain containing 2D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-21515881-4	chr17	21515793	21515993	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19646.0	NM_144515	22710.0	Mm.296100	NM_144515	ENSMUSG00000051341	Zfp52	KRAB11|Zfp-52|Zfp76|mszf23-2|mszf24|mszf34|mszf75|zfec29	zinc finger protein 52	protein-coding	-1.50561175621786	-1.47331375025452	-1.02203377115094	-1.49110398925286	-1.50334449591826	-1.47119716082604	-1.48086985756939	-1.48966786617048	-2.07776723614574	0.550394407909386	1
Merged-chr4-63368916-4	chr4	63368939	63369139	+	982.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045514, intron 21 of 21)	intron (NM_001045514, intron 21 of 21)	6590.0	NM_011016	18406.0	Mm.14173	NM_011016	ENSMUSG00000061540	Orm2	Agp1|Orm-2	orosomucoid 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125030677-4	chr6	125030526	125030726	+	919.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_130997, intron 1 of 3)	intron (NR_130997, intron 1 of 3)	-9222.0	NM_133345	28019.0	Mm.262547	NM_133345	ENSMUSG00000030330	Ing4	D6Wsu147e|D6Xrf92|p29ING4	inhibitor of growth family, member 4	protein-coding	3.91627685682294	3.40401883477807	3.0722573613385	4.10890932438542	3.14081631184893	2.78229832124593	3.21037611335971	4.17322374062571	-0.371258104130396	0.527868604446232	0.948961270024856
Merged-chr15-17538310-2	chr15	17538210	17538410	+	838.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	760209.0	NM_009869	12565.0	Mm.439758	NM_009869	ENSMUSG00000025370	Cdh9	-	cadherin 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47273179-4	chr17	47273099	47273299	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001097623, intron 4 of 19)	intron (NM_001097623, intron 4 of 19)	42969.0	NM_172622	224829.0	Mm.260989	NM_172622		Trerf1	9430096I18Rik|AI429294|B830015H24|RAPA|Trep-132|Trep132	transcriptional regulating factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-104693438-5	chr2	104693260	104693460	+	853.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177190, intron 5 of 9)	intron (NM_177190, intron 5 of 9)	18802.0	NM_177190	320554.0	Mm.249065	NM_177190	ENSMUSG00000027175	Tcp11l1	C130096D04Rik	t-complex 11 like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-77801437-4	chr11	77801335	77801535	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291214, intron 1 of 38)	intron (NM_001291214, intron 1 of 38)	137.0	NM_001291215	360013.0	Mm.341248	NM_011586	ENSMUSG00000000631	Myo18a	MAJN|MyoPDZ|MysPDZ|SP-R210	myosin XVIIIA	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83506967-4	chr6	83506847	83507047	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162521)	promoter-TSS (NM_001162521)	22.0	NM_013764	27369.0	Mm.42234	NM_013764	ENSMUSG00000014554	Dguok	dGK|dGK1|dGK2|dGK3	deoxyguanosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-89599507-4	chr10	89599435	89599635	+	967.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_182959, intron 3 of 11)	intron (NM_182959, intron 3 of 11)	280.0	NM_001310710	216227.0	Mm.233921	NM_182959	ENSMUSG00000019935	Slc17a8	BC042593|Vglut3	solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 8	protein-coding	-0.335551623661524	1.18970608443694	-0.316700027901046	-0.323665698085376	0.0461128388981086	-0.305915993514294	-0.314734269024494	-0.322438615714257	-2.78810732433418	0.236830669200259	1
Merged-chr2-129594883-4	chr2	129594915	129595115	+	969.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355160)	promoter-TSS (NM_001355160)	-447.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	2.29079922305163	2.21479609117381	1.90728372174686	1.17818818528985	1.88765605026942	1.84105245606566	1.92200602669391	1.57757522692821	-0.460489986841013	0.656558968147658	0.988505467120973
Merged-chr11-69627484-2	chr11	69627384	69627584	+	625.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	5432.0	NM_001356468	69215.0	Mm.340410	NM_026991	ENSMUSG00000069835	Sat2	2610016A03Rik|SSAT-2|SSAT2	spermidine/spermine N1-acetyl transferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-70613581-3	chr18	70613484	70613684	+	678.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010773, intron 3 of 6)	intron (NM_010773, intron 3 of 6)	45292.0	NM_010773	17191.0	Mm.322	NM_010773	ENSMUSG00000024513	Mbd2	MBD2a	methyl-CpG binding domain protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-35477973-3	chr18	35477866	35478066	+	621.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030749, intron 1 of 9)	RMER4B|LTR|ERVK	-8014.0	NM_001360814	81500.0	Mm.291482	NM_030749	ENSMUSG00000024357	Sil1	1810057E01Rik|AI042831|wz	endoplasmic reticulum chaperone SIL1 homolog (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117198260-4	chr11	117198177	117198377	+	949.6979369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1384.0	NM_001113486	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-137609955-3	chr7	137609856	137610056	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	172282.0	NR_033611	620016.0	Mm.388932	NR_033611	ENSMUSG00000100863	Gm12669	-	glutaredoxin 3 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-25266421-3	chr2	25266295	25266495	+	831.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175286, intron 1 of 3)	intron (NM_175286, intron 1 of 3)	3797.0	NM_175286	97031.0	Mm.308539	NM_175286	ENSMUSG00000048707	Tprn	C430004E15Rik|C87750	taperin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70844766-4	chr11	70844667	70844867	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291143)	promoter-TSS (NM_001291143)	6.0	NM_001291142	54189.0	Mm.7087	NM_019400	ENSMUSG00000020817	Rabep1	Rab5ep|rabaptin-5|rabaptin-5alpha	rabaptin, RAB GTPase binding effector protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-65279242-2	chr13	65279142	65279342	+	700.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178364, intron 1 of 7)	intron (NM_178364, intron 1 of 7)	388.0	NM_178364	170936.0	Mm.151546	NM_178364	ENSMUSG00000021514	Zfp369	B930030B22Rik|D230020H11Rik|NRIF2	zinc finger protein 369	protein-coding	0.171548357753177	0.284383194175949	-0.138547247084915	-0.00337417957392235	0.178869803897562	-0.134429198145291	-0.137810692441171	-0.140662244522672	-1.41383109328759	0.532912903441888	1
Merged-chr3-97617340-4	chr3	97617244	97617444	+	908.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	-7154.0	NM_026539	68058.0	Mm.31761	NM_026539	ENSMUSG00000028089	Chd1l	4432404A22Rik|Alc1|Snf2p	chromodomain helicase DNA binding protein 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81857157-4	chr15	81857047	81857247	+	872.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020507, intron 1 of 1)	intron (NM_020507, intron 1 of 1)	1179.0	NM_020507	57259.0	Mm.323595	NM_020507	ENSMUSG00000048546	Tob2	2900090N22Rik|4930545K18Rik|AV071822|mKIAA1663	transducer of ERBB2, 2	protein-coding	1.92646829990695	1.88240382596358	2.48179605574795	1.43011327696683	1.94238373618172	1.89595520008317	2.50159299622447	1.43588624056645	0.0399638008261302	0.967926889941507	0.998431161219273
Merged-chr5-139287295-4	chr5	139287203	139287403	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172723, intron 4 of 10)	intron (NM_172723, intron 4 of 10)	33806.0	NM_001163316	67604.0	Mm.270137	NM_026269	ENSMUSG00000025858	Get4	1110007L15Rik|AW412535|Cee	golgi to ER traffic protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78259101-2	chr15	78259001	78259201	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008677, intron 7 of 9)	intron (NM_008677, intron 7 of 9)	14290.0	NM_008677	17972.0	Mm.2068	NM_008677	ENSMUSG00000071715	Ncf4	AI451400|p40phox	neutrophil cytosolic factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-157367685-4	chr2	157367594	157367794	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026968)	promoter-TSS (NM_026968)	100.0	NM_026968	69161.0	Mm.228619	NM_026968	ENSMUSG00000063019	Manbal	1810024K12Rik|AI836500	mannosidase, beta A, lysosomal-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-107332131-2	chr3	107332031	107332231	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001045807, exon 1 of 2)	exon (NM_001045807, exon 1 of 2)	1158.0	NM_001045807	229700.0	Mm.27966	NM_001045807	ENSMUSG00000048109	Rbm15	C230088J01Rik|mKIAA1438	RNA binding motif protein 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-85086179-1	chr1	85086079	85086279	+	903.0	f1_balb.idr	Intergenic	Intergenic	23674.0	NM_213615	381287.0	Mm.487565	NM_213615	ENSMUSG00000089844	A530032D15Rik	Gm1888	RIKEN cDNA A530032D15Rik gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-87311406-2	chr5	87311306	87311506	+	552.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR46A|LTR|ERVK	25789.0	NM_028094	72094.0	Mm.482739	NM_028094	ENSMUSG00000035780	Ugt2a3	2010321J07Rik	UDP glucuronosyltransferase 2 family, polypeptide A3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-30444850-4	chr18	30444725	30444925	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	171960.0	NR_151699	225326.0	Mm.194127	NM_181414	ENSMUSG00000033628	Pik3c3	5330434F23Rik|Vps34	phosphatidylinositol 3-kinase catalytic subunit type 3	protein-coding	1.87784820340675	0.730353051598488	2.220414647142	0.696309945348506	1.56248396825223	0.734541219478386	1.1686595050704	0.698975033427505	-1.50793307526181	0.315177038107674	0.817797167650491
Merged-chr7-66840285-2	chr7	66840185	66840385	+	735.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001033877, exon 2 of 23)	exon (NM_001033877, exon 2 of 23)	550.0	NM_001033877	233332.0	Mm.445763	NM_001033877	ENSMUSG00000058145	Adamts17	AU023434	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-5447752-2	chr15	5447652	5447852	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx10|LINE|L1	-48566.0	NR_045274	71432.0	Mm.291087	NR_045274	ENSMUSG00000110018	5430437J10Rik	-	RIKEN cDNA 5430437J10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-5500517-2	chr15	5500417	5500617	+	595.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045274, intron 1 of 4)	L1Md_A|LINE|L1	4199.0	NR_045274	71432.0	Mm.291087	NR_045274	ENSMUSG00000110018	5430437J10Rik	-	RIKEN cDNA 5430437J10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-34399345-4	chr6	34399251	34399451	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13011.0	NM_009731	11997.0	Mm.482073	NM_009731	ENSMUSG00000052131	Akr1b7	AR|Avdp|MVDP	aldo-keto reductase family 1, member B7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-58509801-2	chr18	58509701	58509901	+	839.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46439.0	NM_001081072	225579.0	Mm.258517	NM_001081072	ENSMUSG00000024600	Slc27a6	4732438L20Rik|FACVL2|FATP6|VLCS-H1	solute carrier family 27 (fatty acid transporter), member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-81536946-4	chr18	81536820	81537020	+	975.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	455160.0	NR_039589	100628596.0		NR_039589	ENSMUSG00000093036	Mir5127	mmu-mir-5127|mu-mir-5127	microRNA 5127	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-95880335-8	chr10	95880250	95880450	+	904.2374880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60313.0	NM_001001932	216238.0	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-35050767-1	chr9	35050667	35050867	+	1000.0	f0_balb.idr	intron (NM_009178, intron 9 of 10)	intron (NM_009178, intron 9 of 10)	-65961.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	1.17766796164699	1.47131521820515	0.667126686043695	1.00107464638604	0.645714162030417	0.68097427760584	1.52281708934246	1.14290699967505	-0.227483854345373	0.881706988811323	0.998431161219273
Merged-chr2-60877144-2	chr2	60877044	60877244	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	4294.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-88731007-4	chr10	88730927	88731127	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025859)	promoter-TSS (NM_025859)	74.0	NM_001037166	237433.0	Mm.478763	NM_001037166		Gm4925	EG237433	predicted gene 4925	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-59261260-4	chr4	59261150	59261350	+	904.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_105031, intron 2 of 3)	intron (NR_105031, intron 2 of 3)	1199.0	NR_105031	101055769.0	Mm.421401	NR_105031		Gm12596	-	predicted gene 12596	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-61139118-4	chr2	61139033	61139233	+	892.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-163982.0	NR_045335	100038493.0	Mm.388076	NR_045335	ENSMUSG00000075325	Gm13582	-	predicted gene 13582	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-32902707-3	chr13	32902601	32902801	+	780.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT-int|LTR|ERVL-MaLR	-4561.0	NM_173051	380839.0	Mm.250802	NM_173051	ENSMUSG00000079049	Serpinb1c	EIC|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 1c	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-133123382-4	chr7	133123229	133123429	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_009980, exon 1 of 11)	5' UTR (NM_009980, exon 1 of 11)	154.0	NM_009980	13017.0	Mm.246240	NM_009980	ENSMUSG00000030970	Ctbp2	AA407280|D7Ertd45e|Gtrgeo6|Ribeye	C-terminal binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56022373-5	chr17	56022261	56022461	+	585.200012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013664, intron 1 of 9)	intron (NM_013664, intron 1 of 9)	13160.0	NM_026530	68047.0	Mm.358710	NM_026530	ENSMUSG00000003199	Mpnd	E130307M08Rik	MPN domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-25867916-4	chr17	25867813	25868013	+	907.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026633, intron 2 of 4)	intron (NM_026633, intron 2 of 4)	825.0	NM_026633	68241.0	Mm.328870	NM_026633	ENSMUSG00000025732	Mcrip2	9530058B02Rik|Fam195a	MAPK regulated corepressor interacting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-27115259-1	chr14	27115159	27115359	+	620.0	f1_c57bl6.idr	Intergenic	Intergenic	-28734.0	NM_001289686	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	0.312975675998461	0.342629835779477	0.333053814200286	1.22821624951411	0.633595464815027	0.571361233030135	0.335176962651113	1.31969491199623	0.669014988223113	0.714997178290907	1
Merged-chr16-55790550-4	chr16	55790445	55790645	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31593.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-184622128-4	chr1	184622077	184622277	+	872.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64486.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-24982080-2	chr2	24981980	24982180	+	825.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_146251, exon 6 of 35)	exon (NM_146251, exon 6 of 35)	6047.0	NM_146251	241274.0	Mm.389243	NM_146251	ENSMUSG00000036833	Pnpla7	BC027342|E430013P11Rik|Nre	patatin-like phospholipase domain containing 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129387686-4	chr2	129387593	129387793	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16554.0	NM_008361	16176.0	Mm.222830	NM_008361	ENSMUSG00000027398	Il1b	IL-1beta|Il-1b	interleukin 1 beta	protein-coding	3.40676119573286	3.3577353929289	4.70726070312684	3.80515703486963	3.43601471640234	2.43117258090207	4.42558875640615	3.82431348732328	-0.319547427830207	0.59203086564167	0.97015200361199
Merged-chr16-36753251-3	chr16	36753155	36753355	+	953.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021301, intron 19 of 21)	intron (NM_021301, intron 19 of 21)	31707.0	NM_001145899	57738.0	Mm.281804	NM_021301	ENSMUSG00000022899	Slc15a2	8430408C16Rik|C78862|Pept2	solute carrier family 15 (H+/peptide transporter), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-17837976-1	chr17	17837876	17838076	+	1000.0	f0_c57.idr	intron (NM_001162909, intron 6 of 8)	intron (NM_001162909, intron 6 of 8)	7001.0	NM_001162909	75202.0	Mm.227456	NM_029205	ENSMUSG00000080316	Spaca6	4930546H06Rik|9530079D04Rik|B230206P06Rik|Ncrna00085|SPACA6A|let-7e|mir-125a|mir-99b	sperm acrosome associated 6	protein-coding	3.2962882071349	3.12576552903599	3.94876779725242	2.52850288971256	4.04871537667292	3.26384346367886	3.59721197823194	2.69135439540309	0.272378279802229	0.663728029334099	0.991657818949578
Merged-chr3-86986590-3	chr3	86986452	86986652	+	748.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007640)	promoter-TSS (NM_007640)	-34.0	NM_001289449	12480.0	Mm.389465	NM_007640	ENSMUSG00000041750	Cd1d2	CD1.2|Cd1b|Ly-38	CD1d2 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-57849320-3	chr1	57849223	57849423	+	944.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164566, intron 1 of 11)	MER5A|DNA|hAT-Charlie	3752.0	NM_001164566	67198.0	Mm.159989	NM_144882	ENSMUSG00000038305	Spats2l	2810022L02Rik|A230104H11Rik|AA987173|AI480531|AI842453|AW413586	spermatogenesis associated, serine-rich 2-like	protein-coding	2.69842217848515	2.36890966333589	4.10241499360752	3.2050213823609	3.39605047889525	3.95648363358143	4.18506200763316	4.37885484828931	1.10214292966581	0.0617461717641573	0.369062056871318
Merged-chr10-40140364-2	chr10	40140264	40140464	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 1 of 5)	intron (NM_001114332, intron 1 of 5)	1890.0	NM_028247	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-104637790-3	chr3	104637702	104637902	+	948.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009196)	promoter-TSS (NM_009196)	-862.0	NM_009196	20501.0	Mm.9086	NM_009196	ENSMUSG00000032902	Slc16a1	AL022710|Mct1	solute carrier family 16 (monocarboxylic acid transporters), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-66126652-4	chr9	66126571	66126771	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026635)	promoter-TSS (NM_026635)	60.0	NM_026635	68250.0	Mm.27107	NM_026635	ENSMUSG00000032381	Fam96a	5730536A07Rik	family with sequence similarity 96, member A	protein-coding	5.33681732137414	5.97474301192663	5.68961337726284	6.17199405545758	5.57975410319284	6.39267483309619	5.31780450236353	5.55373620517344	-0.0627192134441099	0.833205826720017	0.998431161219273
Merged-chr2-18698819-4	chr2	18698721	18698921	+	888.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001001334)	promoter-TSS (NM_001001334)	-201.0	NM_001001334	381350.0	Mm.330024	NM_001001334	ENSMUSG00000037708	Spag6	Spag6l	sperm associated antigen 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125096901-4	chr6	125096827	125097027	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_106012)	promoter-TSS (NR_106012)	-97.0	NR_106012	102466272.0		NR_106012	ENSMUSG00000098762	Mir7045	Gm27758|mmu-mir-7045	microRNA 7045	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91383082-2	chr16	91382982	91383182	+	876.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347258, intron 1 of 7)	intron (NM_001347258, intron 1 of 7)	10299.0	NM_001110498	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-90042625-4	chr7	90042536	90042736	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110364, intron 5 of 5)	intron (NR_110364, intron 5 of 5)	13477.0	NR_110364	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	0.597700115546943	1.06896162572386	0.345647095622531	0.504212483829344	0.71487866878125	0.71245740315935	0.347166624998749	0.507317075692216	-0.508341400996426	0.762229831988908	1
Merged-chr11-55164916-2	chr11	55164816	55165016	+	598.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153170, intron 7 of 9)	B3|SINE|B2	-13210.0	NM_172258	215332.0	Mm.87054	NM_172258	ENSMUSG00000049491	Slc36a3	PAT3|TRAMD2|tramdorin2	solute carrier family 36 (proton/amino acid symporter), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55552963-3	chr19	55552841	55553041	+	863.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360431, intron 8 of 8)	intron (NM_001360431, intron 8 of 8)	149263.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127555933-4	chr10	127555812	127556012	+	890.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 54 of 88)	intron (NM_008512, intron 54 of 88)	-21353.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-10022677-2	chr3	10022577	10022777	+	913.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10092.0	NM_001272098	16592.0	Mm.741	NM_010634	ENSMUSG00000027533	Fabp5	E-FABP|Fabpe|Klbp|PA-FABP|mal1	fatty acid binding protein 5, epidermal	protein-coding	-0.464788484925682	-0.451239750889832	0.337718934957978	-0.0127887973543457	-0.463939603954849	-0.450243351801698	-0.454689462897944	-0.458491662535214	-3.62115916282911	0.169687284882791	1
Merged-chr11-82269429-2	chr11	82269329	82269529	+	593.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-89617.0	NM_011329	20290.0	Mm.1283	NM_011329	ENSMUSG00000020702	Ccl1	BF534335|I-309|P500|Scya1|Tca-3|Tca3	chemokine (C-C motif) ligand 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-85393987-2	chr17	85393887	85394087	+	667.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028576, intron 5 of 10)	intron (NM_028576, intron 5 of 10)	224409.0	NR_038084	100043902.0	Mm.150838	NR_015385	ENSMUSG00000093460	Six3os1	D17Mgi26|E130112H22Rik|Rncr1|Six3os	SIX homeobox 3, opposite strand 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-101516763-4	chr14	101516649	101516849	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081278, intron 1 of 18)	RMER19B|LTR|ERVK	92442.0	NM_001081278	210789.0	Mm.320639	NM_173380	ENSMUSG00000033083	Tbc1d4	5930406J04Rik|A930035N22|AV295684|As160	TBC1 domain family, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-99514730-2	chr12	99514630	99514830	+	629.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49111.0	NR_136760	102639404.0	Mm.396324	NR_136760	ENSMUSG00000097917	Gm26839	-	predicted gene, 26839	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-34435429-4	chr19	34435328	34435528	+	961.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39707.0	NM_009890	12642.0	Mm.30824	NM_009890	ENSMUSG00000050370	Ch25h	AI462618|m25OH	cholesterol 25-hydroxylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-5431881-4	chr16	5431768	5431968	+	953.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-175912.0	NM_027446	70511.0	Mm.45780	NM_027446	ENSMUSG00000022544	Eef2kmt	5730409G15Rik|Fam86|Fam86a|eEF2-KMT	eukaryotic elongation factor 2 lysine methyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-33246153-4	chr4	33246062	33246262	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001033225, exon 2 of 2)	exon (NM_001033225, exon 2 of 2)	2625.0	NM_001033225	108767.0	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-60848975-3	chr9	60848845	60849045	+	633.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357408, intron 4 of 19)	intron (NM_001357408, intron 4 of 19)	54503.0	NM_001357407	72565.0	Mm.68819	NM_028283	ENSMUSG00000034485	Uaca	2700059D02Rik|nucling	uveal autoantigen with coiled-coil domains and ankyrin repeats	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-41149220-1	chr12	41149120	41149320	+	547.0	f0_balb.idr	intron (NM_053122, intron 4 of 6)	intron (NM_053122, intron 4 of 6)	125130.0	NM_053122	93757.0	Mm.363813	NM_053122	ENSMUSG00000056899	Immp2l	AI853880|IMP2|Tg(HLA-A/H2-D)2Enge	IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36285075-5	chr18	36285080	36285280	+	772.608337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008989, intron 1 of 1)	intron (NM_008989, intron 1 of 1)	4018.0	NM_008989	19290.0	Mm.231802	NM_008989	ENSMUSG00000043991	Pura	CAGER-1|Pur-alpha|ssCRE-BP	purine rich element binding protein A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-96757650-3	chr15	96757547	96757747	+	985.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57919.0	NM_175121	67760.0	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128372772-2	chr10	128372672	128372872	+	918.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	-2735.0	NM_001081040	210582.0	Mm.296876	NM_001081040	ENSMUSG00000039914	Coq10a	Gm1	coenzyme Q10A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122759196-2	chr5	122759096	122759296	+	750.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199676, intron 2 of 16)	B4A|SINE|B4	20214.0	NM_001199676	207565.0	Mm.289237	NM_145358	ENSMUSG00000029471	Camkk2	6330570N16Rik|AW061083|mKIAA0787	calcium/calmodulin-dependent protein kinase kinase 2, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78305102-2	chr15	78305002	78305202	+	739.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001287389, intron 1 of 11)	intron (NM_001287389, intron 1 of 11)	619.0	NM_007781	12984.0	Mm.1940	NM_007781	ENSMUSG00000071714	Csf2rb2	AIC2A|BetaIl3|Bil3|Csfgmrb|Il3r|Il3rb|Il3rb2	colony stimulating factor 2 receptor, beta 2, low-affinity (granulocyte-macrophage)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-119351122-2	chr9	119351022	119351222	+	605.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_130864)	TTS (NM_130864)	-6259.0	NM_001199568	102448.0	Mm.219497	NM_001033209	ENSMUSG00000035769	Xylb	AI132223|AI327421	xylulokinase homolog (H. influenzae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-98281557-2	chr12	98281457	98281657	+	700.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	12922.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91729185-2	chr2	91729085	91729285	+	645.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172669)	promoter-TSS (NM_172669)	-953.0	NM_172669	228361.0	Mm.436667	NM_172669	ENSMUSG00000040506	Ambra1	2310079H06Rik|A130023A14|AA474864|AV021921|D030051N19Rik|mKIAA1736	autophagy/beclin 1 regulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-40617281-2	chr9	40617098	40617298	+	801.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68766.0	NM_133733	71566.0	Mm.280560	NM_133733	ENSMUSG00000032024	Clmp	9030425E11Rik|ACAM|ASP5|AW557819	CXADR-like membrane protein	protein-coding	1.13987870940349	1.60603321051937	2.00744931200644	1.50663793132715	1.76596335061957	1.01571553515164	2.02475325834417	1.19158699850697	-0.0902917045854821	0.939487645491176	0.998431161219273
Merged-chr9-110657801-4	chr9	110657713	110657913	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028312, intron 1 of 6)	intron (NM_028312, intron 1 of 6)	1310.0	NM_028312	72654.0	Mm.249115	NM_028312	ENSMUSG00000019659	Ccdc12	2700094L05Rik|C76605	coiled-coil domain containing 12	protein-coding	4.59968102109084	4.89139092827668	4.45434850848844	4.33521736208548	4.89763735140129	4.83312983355435	4.31454669963032	4.91450643221725	0.226079707296868	0.529681759970111	0.949754172978189
Merged-chr17-34238554-1	chr17	34238454	34238654	+	1000.0	f1_c57bl6.idr	promoter-TSS (NM_010389)	promoter-TSS (NM_010389)	-351.0	NM_010389	15002.0	Mm.327358	NM_010389	ENSMUSG00000041538	H2-Ob	A-beta-2|A-beta2|H-2Ab|H-2I|H-2Ob|H2-Ab|H2-Ab2|H2-IAb2|Ob	histocompatibility 2, O region beta locus	protein-coding	1.51078667029884	2.44681397025949	1.0033030094354	2.63589132389957	0.949451501386596	2.03317263566099	1.27289249637391	1.6099167194537	-1.42158015332385	0.229441201615338	0.722908491854209
Merged-chr17-34391657-4	chr17	34391556	34391756	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7164.0	NM_001001177	407788.0	Mm.73205	NM_001001177	ENSMUSG00000057246	BC051142	NG8|TSBP|Tesb|Tesbp	cDNA sequence BC051142	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5853542-2	chr19	5853442	5853642	+	660.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026169, intron 10 of 10)	(GGA)n|Simple_repeat|Simple_repeat	-8062.0	NR_003513	66961.0	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-20645431-4	chr18	20645340	20645540	+	972.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155534, intron 1 of 2)	RMER5|LTR|ERV1	-19810.0	NM_013697	22139.0	Mm.2108	NM_013697	ENSMUSG00000061808	Ttr	AA408768|AI787086|D17860|prealbumin	transthyretin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-44953213-4	chr2	44953096	44953296	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	69981.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-80088670-2	chr11	80088570	80088770	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001029856)	promoter-TSS (NM_001029856)	-730.0	NM_001029856	237877.0	Mm.89551	NM_001029856	ENSMUSG00000017550	Atad5	C130052G03Rik|FRAG1|Gm17	ATPase family, AAA domain containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-125594189-4	chr2	125594097	125594297	+	874.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081091, intron 13 of 27)	intron (NM_001081091, intron 13 of 27)	30916.0	NM_001081091	99100.0	Mm.330545	NM_001081091	ENSMUSG00000068394	Cep152	AI851464|mKIAA0912	centrosomal protein 152	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-62343632-3	chr9	62343513	62343713	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009672, intron 1 of 6)	CpG	2270.0	NM_009672	11737.0	Mm.269088	NM_009672	ENSMUSG00000032249	Anp32a	Anp32|I1PP2A|LANP|PHAP1|W91701|pp32	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75651942-4	chr11	75651845	75652045	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080774)	promoter-TSS (NM_001080774)	-205.0	NM_001080774	17913.0	Mm.234502	NM_008659	ENSMUSG00000017774	Myo1c	C80397|MMIb|MYO1E|NMI|mm1beta|myr2	myosin IC	protein-coding	3.55803592837755	4.05984168902551	4.3850769544022	4.06661711537679	3.07282175507729	4.28294295747321	4.08890027251472	4.14120129273977	-0.110963063657386	0.818695219585032	0.998431161219273
Merged-chr6-148682122-3	chr6	148682020	148682220	+	789.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4120.0	NR_131024	75831.0	Mm.159595	NR_131024	ENSMUSG00000084909	4930528G23Rik	-	RIKEN cDNA 4930528G23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-117820284-3	chr12	117820182	117820382	+	702.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23579.0	NM_146040	217946.0	Mm.281149	NM_146040	ENSMUSG00000021175	Cdca7l	BC006933|JPO2	cell division cycle associated 7 like	protein-coding	3.31379899899037	3.01738493366296	2.52663635517126	2.45440209979346	3.55983145256925	3.34166016464827	3.04570104569373	3.04850137568131	0.668791531409441	0.295024019985063	0.798308117226157
Merged-chr2-150782037-2	chr2	150781937	150782137	+	635.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-4759.0	NM_153781	110078.0	Mm.222584	NM_153781	ENSMUSG00000033059	Pygb	-	brain glycogen phosphorylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-21631832-4	chr16	21631732	21631932	+	774.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081366, intron 45 of 46)	intron (NM_001081366, intron 45 of 46)	62833.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-31894984-3	chr18	31894897	31895097	+	767.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028866, intron 17 of 21)	intron (NM_028866, intron 17 of 21)	16906.0	NM_026006	67158.0	Mm.31537	NM_026006	ENSMUSG00000044982	Sft2d3	2610206C24Rik|AI847965|AW046173	SFT2 domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-103065681-4	chr13	103065559	103065759	+	900.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175171, intron 3 of 28)	intron (NM_175171, intron 3 of 28)	268833.0	NM_175171	328329.0	Mm.202606	NM_175171	ENSMUSG00000034751	Mast4	4930420O11Rik|AI642422|mKIAA0303	microtubule associated serine/threonine kinase family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-148917999-4	chr3	148917901	148918101	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081298, intron 1 of 23)	intron (NM_001081298, intron 1 of 23)	36634.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	4.89011200997041	5.43342411628919	4.80234992282447	5.18096707627648	5.23017227048106	4.44926114705473	5.07793647373095	4.82508485547178	-0.189577453975703	0.569284754804247	0.962718661854691
Merged-chr5-123694663-4	chr5	123694567	123694767	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10306.0	NM_001359222	56430.0	Mm.241109	NM_019765	ENSMUSG00000049550	Clip1	1110007I12Rik|4631429H07Rik|AV017631|C81039|CLIP-170|CLIP170|CYLN1|Clip50|Rsn|mKIAA4046|restin	CAP-GLY domain containing linker protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-34031624-2	chr6	34031524	34031724	+	740.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028886, intron 1 of 19)	intron (NM_028886, intron 1 of 19)	2176.0	NM_028886	74354.0	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124553744-1	chr5	124553644	124553844	+	571.5	f1_c57bl6.idr	intron (NM_001190795, intron 1 of 13)	intron (NM_001190795, intron 1 of 13)	880.0	NM_026409	67848.0	Mm.281601	NM_026409	ENSMUSG00000029389	Ddx55	2810021H22Rik|mKIAA1595	DEAD (Asp-Glu-Ala-Asp) box polypeptide 55	protein-coding	-0.00402050933855976	-0.246138474822921	-0.250290365871657	0.258625905028375	-0.257983013970357	-0.24520063501525	-0.249375844480079	0.265318070805992	-0.477543500849512	0.845364622105558	1
Merged-chr12-84180874-4	chr12	84180800	84181000	+	959.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163501, intron 1 of 12)	B4A|SINE|B4	13115.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-151368606-4	chr5	151368523	151368723	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045699)	promoter-TSS (NR_045699)	-52.0	NR_045700	625175.0	Mm.443286	NR_045699	ENSMUSG00000097321	1700028E10Rik	A630054D14|Gm6561	RIKEN cDNA 1700028E10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-32184027-2	chr19	32183927	32184127	+	809.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 5 of 9)	intron (NM_144792, intron 5 of 9)	26986.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-96564036-4	chr15	96563939	96564139	+	957.283325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28|LTR|ERVL	77923.0	NM_134086	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-181244117-4	chr2	181244017	181244217	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2090.0	NM_183162	229003.0	Mm.315872	NM_183162	ENSMUSG00000027580	Helz2	PDIP1|Pric285|mKIAA1769|mPDIP1	helicase with zinc finger 2, transcriptional coactivator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-19977731-2	chr14	19977631	19977831	+	934.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285910)	promoter-TSS (NM_001285910)	-482.0	NM_001285909	14702.0	Mm.41737	NM_010315	ENSMUSG00000043004	Gng2	-	guanine nucleotide binding protein (G protein), gamma 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-137825521-4	chr6	137825424	137825624	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172733, intron 6 of 8)	intron (NM_172733, intron 6 of 8)	70947.0	NM_172733	232449.0	Mm.29181	NM_172733	ENSMUSG00000030225	Dera	2010002D22Rik|2500002K03Rik|DEOC	deoxyribose-phosphate aldolase (putative)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-54805569-1	chr13	54805469	54805669	+	1000.0	f1_balb.idr	Intergenic	Intergenic	16164.0	NM_028841	74257.0	Mm.32883	NM_028841	ENSMUSG00000025875	Tspan17	2210021G21Rik|AI047581|Fbxo23|Tm4sf17	tetraspanin 17	protein-coding	1.20675070135954	1.21181700034854	1.17378713965089	1.47856413845997	0.830482519604726	1.05291842378459	1.62395717638881	1.14925077145508	-0.287549549718426	0.826651438877763	0.998431161219273
Merged-chr2-32859320-3	chr2	32859229	32859429	+	820.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12092.0	NM_001113569	20910.0	Mm.278865	NM_009295	ENSMUSG00000026797	Stxbp1	AI317162|AI326233|MMS10-G|Ms10g|Munc-18a|Munc18-1|N-sec1|Rb-sec1|Sxtbp1|Unc18-1|Unc18h|nsec1	syntaxin binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-108715290-3	chr8	108715240	108715440	+	942.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007496, intron 1 of 9)	CpG	696.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-114616733-2	chr5	114616633	114616833	+	565.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	41688.0	NM_022017	63873.0	Mm.266450	NM_022017	ENSMUSG00000014158	Trpv4	0610033B08Rik|OTRPC4|Trp12|VR-OAC|VRL-2|VROAC	transient receptor potential cation channel, subfamily V, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-72654923-2	chr12	72654823	72655023	+	680.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_025522, intron 4 of 6)	B3|SINE|B2	9905.0	NM_025522	66375.0	Mm.289653	NM_025522	ENSMUSG00000021094	Dhrs7	2310016E22Rik|5730564L20Rik|AW061210|Retdsr4|Retsdr4	dehydrogenase/reductase (SDR family) member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70768425-4	chr8	70768332	70768532	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008841, exon 16 of 16)	3' UTR (NM_008841, exon 16 of 16)	-1769.0	NM_023065	65972.0	Mm.30241	NM_023065		Ifi30	GILT|IP30	interferon gamma inducible protein 30	protein-coding	6.22164050011439	6.17396574606641	6.16545007029227	6.84620056426036	6.85324463319716	6.37204890257595	6.55472750718921	6.78479350394428	0.293659655294129	0.185471434992057	0.661237998326476
Merged-chr5-20936028-4	chr5	20935924	20936124	+	998.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080977, intron 1 of 7)	intron (NM_001080977, intron 1 of 7)	-14965.0	NR_030699	320770.0	Mm.491217	NR_030699	ENSMUSG00000101013	A630072M18Rik	Aptr	RIKEN cDNA A630072M18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-16996680-1	chr12	16996580	16996780	+	582.0	f1_c57bl6.idr	intron (NM_172574, intron 3 of 6)	intron (NM_172574, intron 3 of 6)	3438.0	NM_172574	217430.0	Mm.379451	NM_172574	ENSMUSG00000045679	Pqlc3	C78076|E030024M05Rik	PQ loop repeat containing	protein-coding	-0.800902393975908	-0.935897617394658	-0.946287014973534	-0.948736708533097	-0.952203366788739	-0.933120295379086	-0.2320457676838	-0.948308542095855	2.17412424731767	0.475677479681754	1
Merged-chr17-49182677-2	chr17	49182577	49182777	+	561.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69144.0	NR_038144	69311.0	Mm.46140	NR_038141	ENSMUSG00000101012	1700008K24Rik	-	RIKEN cDNA 1700008K24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-96874032-3	chr11	96874057	96874257	+	786.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	23764.0	NR_029562	387170.0		NR_029562	ENSMUSG00000065515	Mir152	Mirn152|mir-152|mmu-mir-152	microRNA 152	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-134968350-2	chr4	134968250	134968450	+	760.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37370.0	NM_026780	68592.0	Mm.29989	NM_026780	ENSMUSG00000028821	Syf2	1110018L13Rik|Cbpin|D4Bwg1551e|Gcipip|Ntc31|mp29|p29	SYF2 homolog, RNA splicing factor (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36917377-2	chr1	36917203	36917403	+	638.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_018872, intron 1 of 40)	L2b|LINE|L2	22224.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-4288007-4	chr18	4287892	4288092	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	64961.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-76859451-4	chr11	76859351	76859551	+	980.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12443.0	NM_007754	12874.0	Mm.276736	NM_007754	ENSMUSG00000020841	Cpd	AA960140|AW322530|D830034L15Rik	carboxypeptidase D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153143079-2	chr2	153142979	153143179	+	911.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001172117, intron 10 of 12)	intron (NM_001172117, intron 10 of 12)	-18222.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-72190859-2	chr4	72190759	72190959	+	599.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285530, intron 4 of 17)	intron (NM_001285530, intron 4 of 17)	10034.0	NM_011599	21885.0	Mm.278444	NM_011599	ENSMUSG00000008305	Tle1	C230057C06Rik|Estm14|Grg-1|Grg1|Tle4l	transducin-like enhancer of split 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165403477-3	chr2	165403376	165403576	+	940.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER102a|DNA|hAT-Charlie	-3082.0	NM_029021	74614.0	Mm.72179	NM_029021	ENSMUSG00000027670	Ocstamp	4833422F24Rik|OC-STAMP	osteoclast stimulatory transmembrane protein	protein-coding	-1.26959930736558	-1.07601107343002	-1.25215172459449	-1.26079773200946	-1.26914647640648	-1.23934523325413	-1.24976896878841	-0.82517731904646	1.29013408846881	0.699782150978711	1
Merged-chr4-105718284-2	chr4	105718184	105718384	+	844.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB5|LINE|L1	-522929.0	NR_151521	105244641.0	Mm.404914	NR_151521		Gm12724	-	predicted gene 12724	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-20794360-3	chr11	20794259	20794459	+	723.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36749.0	NM_173752	216551.0	Mm.76694	NM_173752	ENSMUSG00000042363	Lgalsl	1110067D22Rik|A530071M23|Grpa|Hspc159|Lgalsla	lectin, galactoside binding-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-94519193-4	chr16	94519069	94519269	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007834, intron 1 of 7)	MTE2b|LTR|ERVL-MaLR	7460.0	NM_007834	13185.0	Mm.7472	NM_007834	ENSMUSG00000022898	Dscr3	AW538125|Dcra	DSCR3 arrestin fold containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-103465324-2	chr14	103465224	103465424	+	767.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-48017.0	NM_022886	64929.0	Mm.244003	NM_022886	ENSMUSG00000022123	Scel	9230114I02Rik	sciellin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-85072415-2	chr16	85072322	85072522	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001198825, intron 5 of 15)	intron (NM_001198825, intron 5 of 15)	100211.0	NR_045889	100038614.0	Mm.441351	NR_045889	ENSMUSG00000115518	Gm10791	-	predicted gene 10791	ncRNA	2.78944843829811	2.34876462468672	1.57851153228783	3.11064387223828	3.30738915424181	3.15396941830436	3.2238417629653	3.12643787423765	1.11559494266773	0.123163644405758	0.550291983210134
Merged-chr15-31598307-2	chr15	31598207	31598407	+	555.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007637, intron 1 of 10)	intron (NM_007637, intron 1 of 10)	3232.0	NM_001348035	12465.0	Mm.282158	NM_007637	ENSMUSG00000022234	Cct5	CCT-epsilon|Ccte|TCP-1-epsilon|TCPE|mKIAA0098	chaperonin containing Tcp1, subunit 5 (epsilon)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-29861682-4	chr5	29861570	29861770	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-125734.0	NR_028426	332993.0	Mm.473746	NR_028426		Gm5129	EG332993	predicted gene 5129	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-30855061-2	chr18	30854962	30855162	+	700.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	462066.0	NM_009065	19762.0	Mm.5163	NM_009065	ENSMUSG00000057455	Rit2	RIBA|Rin|Roc2	Ras-like without CAAX 2	protein-coding	-0.898563638178087	-0.885109685104313	-0.892486422113862	-0.894773426305683	-0.623948975444106	-0.882395102459847	-0.308903895721796	-0.894374095884481	3.04076287829891	0.31224671307005	1
Merged-chr5-110770202-2	chr5	110770102	110770302	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_152254)	promoter-TSS (NR_152254)	515.0	NM_029337	75560.0	Mm.270487	NM_029337	ENSMUSG00000029505	Ep400	1700020J09Rik|AU023439|mDomino|mKIAA1498|p400	E1A binding protein p400	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-8002803-3	chr14	8002688	8002888	+	879.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001331065)	promoter-TSS (NM_001331065)	-100.0	NM_025341	66082.0	Mm.181473	NM_025341	ENSMUSG00000025277	Abhd6	0610041D24Rik|AA673485|AV065425	abhydrolase domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-69822224-2	chr8	69822124	69822324	+	781.825012	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020028)	promoter-TSS (NM_020028)	-341.0	NM_020028	53978.0	Mm.23253	NM_020028	ENSMUSG00000031861	Lpar2	Edg4|IPA2|LPA2	lysophosphatidic acid receptor 2	protein-coding	-1.18818405238703	-1.1621273909064	-1.17340543805306	-1.18266956177369	-0.508992984534732	-1.15968339104222	-1.17085233538681	-1.18101128805699	2.76775479490304	0.421927342186551	1
Merged-chr6-71267804-2	chr6	71267704	71267904	+	566.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13B1|LTR|ERVK	-3867.0	NR_106192	102465900.0		NR_106192	ENSMUSG00000098623	Mir8112	Gm27739|mmu-mir-8112	microRNA 8112	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-12711888-3	chr8	12711777	12711977	+	845.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033546, intron 3 of 3)	MTE2a|LTR|ERVL-MaLR	7250.0	NR_033546	100038554.0	Mm.367723	NR_033546	ENSMUSG00000074469	Gm15348	-	predicted gene 15348	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105261867-2	chr8	105261767	105261967	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033161, intron 1 of 4)	intron (NM_001033161, intron 1 of 4)	2727.0	NM_001033161	71609.0	Mm.264255	NM_001033161	ENSMUSG00000031887	Tradd	9130005N23Rik|AA930854	TNFRSF1A-associated via death domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-190170720-4	chr1	190170632	190170832	+	905.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008937)	promoter-TSS (NM_008937)	95.0	NM_008937	19130.0	Mm.132579	NM_008937	ENSMUSG00000010175	Prox1	A230003G05Rik|PROX-1	prospero homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97508210-2	chr6	97508110	97508310	+	896.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	-20390.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	1.21215721376606	1.73954785403979	0.791908311707569	1.14192782167588	1.22286141687097	1.75494609206043	0.795020348525959	1.147851275004	0.0380831210147136	0.977535899060875	0.998431161219273
Merged-chr7-99500394-3	chr7	99500293	99500493	+	812.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16684.0	NM_012052	27050.0	Mm.236868	NM_012052	ENSMUSG00000030744	Rps3	D7Ertd795e|Rs_3	ribosomal protein S3	protein-coding	2.99230586358883	2.80106803583298	2.70509540259475	1.36605298088721	2.51116415179866	1.96288694856731	2.98879259905762	1.84031848098583	-0.383900034136092	0.669672659488119	0.993577811443337
Merged-chr13-34189688-1	chr13	34189588	34189788	+	557.0	f0_balb.idr	intron (NM_001033167, intron 10 of 10)	MTC|LTR|ERVL-MaLR	26724.0	NM_001110515	69666.0	Mm.24788	NM_001101430	ENSMUSG00000071451	Psmg4	PAC-4|mPAC4	proteasome (prosome, macropain) assembly chaperone 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-143512460-1	chr5	143512360	143512560	+	557.0	f0_balb.idr	intron (NM_001347530, intron 3 of 6)	intron (NM_001347530, intron 3 of 6)	15533.0	NM_009007	19353.0	Mm.292510	NM_009007	ENSMUSG00000001847	Rac1	AL023026|D5Ertd559e	Rac family small GTPase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-116685635-4	chr4	116685608	116685808	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040442, exon 2 of 3)	intron (NM_011034, intron 1 of 5)	109.0	NM_011034	18477.0	Mm.30929	NM_011034	ENSMUSG00000028691	Prdx1	MSP23|NkefA|OSF-3|OSF3|PAG|Paga|PrdxI|PrxI|TDX2|TPxA|Tdpx2|prx1	peroxiredoxin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-89197637-4	chr9	89197546	89197746	+	934.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16B2|LTR|ERVL	-1627.0	NM_007534	12045.0	Mm.479217	NM_007534	ENSMUSG00000089929	Bcl2a1b	A1-b	B cell leukemia/lymphoma 2 related protein A1b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-6504890-1	chr11	6504790	6504990	+	672.0	f1_c57bl6.idr	Intergenic	RLTR49|LTR|ERVK	16068.0	NM_178440	246177.0	Mm.239554	NM_178440	ENSMUSG00000020437	Myo1g	E430002D17Rik	myosin IG	protein-coding	0.834845084859772	1.10676873213711	0.55500404557269	1.50284021193596	0.842731425705919	0.567662891030571	1.19422985645737	0.548353119085952	-1.09388195675992	0.492797895337233	0.935679785535167
Merged-chr16-55895363-4	chr16	55895262	55895462	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001134457)	promoter-TSS (NM_001134457)	-83.0	NM_001134457	385658.0	Mm.310635	NM_001134457	ENSMUSG00000075033	Nxpe3	Fam55c|Gm1752|Gm611	neurexophilin and PC-esterase domain family, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-50190516-4	chr17	50190425	50190625	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181397)	promoter-TSS (NM_181397)	-28.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-122348669-4	chr2	122348571	122348771	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001099297)	TTS (NM_001099297)	20247.0	NM_001013829	435684.0	Mm.458215	NM_001013829	ENSMUSG00000033256	Shf	-	Src homology 2 domain containing F	protein-coding	4.70576614867369	5.38804898335789	4.98223122634809	4.18952331057431	4.36160071959943	4.64988354926639	4.08002310047812	3.54146478855729	-0.835927166694577	0.0463041064037168	0.310926759436982
Merged-chr14-27405765-4	chr14	27405665	27405865	+	945.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23069.0	NM_028945	218850.0	Mm.247767	NM_028945	ENSMUSG00000040651	Fam208a	4732418E12|4933409E02Rik|D14Abb1e|MommeD6	family with sequence similarity 208, member A	protein-coding	1.86412774097447	1.99359847134948	1.06554895525293	2.31674933828224	1.88060964564597	2.00944194287778	1.07051688432574	1.27497162377727	-0.760488743111466	0.517740388421645	0.947641799425091
Merged-chr7-67260040-3	chr7	67259942	67260142	+	831.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357324, intron 7 of 11)	intron (NM_001357324, intron 7 of 11)	37426.0	NM_001191051	75099.0	Mm.121691	NM_175215	ENSMUSG00000043831	Lysmd4	4930506D23Rik	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-31128034-3	chr2	31127889	31128089	+	767.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355105, intron 1 of 15)	RMER17C|LTR|ERVK	14019.0	NM_001355106	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126976121-4	chr7	126976007	126976207	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001362232)	promoter-TSS (NM_001362232)	193.0	NM_001347656	52858.0	Mm.28219	NM_026638	ENSMUSG00000030682	Cdipt	9530042F15Rik|D7Bwg0575e|Pis|Pis1	CDP-diacylglycerol--inositol 3-phosphatidyltransferase (phosphatidylinositol synthase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-43236192-4	chr5	43236092	43236292	+	810.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028417)	promoter-TSS (NR_028417)	-838.0	NR_028417	665934.0	Mm.381491	NR_028417	ENSMUSG00000085720	Gm7854	EG665934	predicted gene 7854	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-34138238-4	chr10	34138135	34138335	+	980.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA5|LINE|L1	-10263.0	NM_175449	215900.0	Mm.34479	NM_175449	ENSMUSG00000046031	Fam26f	A630077B13Rik|Calhm6	family with sequence similarity 26, member F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-46820082-4	chr11	46819991	46820191	+	978.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178759, intron 5 of 8)	intron (NM_178759, intron 5 of 8)	9292.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	2.92528398828418	2.75945092340155	3.18914604450889	3.86669560877292	4.24378931661859	2.94175503467019	4.30934049278977	3.76485373460618	0.97955050672575	0.090897606182514	0.465931135991656
Merged-chr13-19430105-4	chr13	19430008	19430208	+	704.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34295.0	NM_001347485	76205.0	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56134719-4	chr17	56134603	56134803	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013662)	promoter-TSS (NM_013662)	-851.0	NM_013662	20359.0	Mm.8029	NM_013662	ENSMUSG00000001227	Sema6b	Sema|Seman|VIb|semaZ	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-64917819-4	chr12	64917733	64917933	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001025605)	promoter-TSS (NM_001025605)	-78.0	NM_001025605	217648.0	Mm.341586	NM_001025605	ENSMUSG00000047227	Gm527	-	predicted gene 527	protein-coding	5.76801722113138	5.88538392779339	5.15782099209186	5.89417246787515	2.66919998729802	3.10000802129615	3.60447490340695	3.0006614824558	-3.26730189206863	4.078861638971e-15	2.52917650565713e-12
Merged-chr11-46786177-1	chr11	46786077	46786277	+	626.0	f1_balb.idr	Intergenic	RMER1A|Other|Other	-24622.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191186659-3	chr1	191186523	191186723	+	881.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3290.0	NM_007498	11910.0	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-18406070-2	chr9	18405970	18406170	+	617.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360216, intron 1 of 1)	MT2B|LTR|ERVL	1652.0	NM_001360216	546118.0	Mm.380138	NM_001033793	ENSMUSG00000074502	Ubtfl1	B020006M18Rik|Hmgpi	upstream binding transcription factor, RNA polymerase I-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-40166833-2	chr15	40166733	40166933	+	890.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_155349, intron 2 of 2)	intron (NR_155349, intron 2 of 2)	4226.0	NR_155349	102636151.0	Mm.321976	NR_155349	ENSMUSG00000115367	Gm33301	-	predicted gene, 33301	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-23765300-2	chr13	23765200	23765400	+	644.333374	f1_balb.idr|f1_c57bl6.idr	TTS (NM_030609)	TTS (NM_030609)	1632.0	NM_030609	80838.0	Mm.480242	NM_030609	ENSMUSG00000049539	Hist1h1a	H1.1|H1a|H1f1|H1var3	histone cluster 1, H1a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-83985550-2	chr18	83985450	83985650	+	665.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	101012.0	NM_001081300	110796.0	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-100635902-4	chr5	100635820	100636020	+	798.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38336.0	NM_027978	71883.0	Mm.260661	NM_027978	ENSMUSG00000029319	Coq2	2310002F18Rik|PHB:PPT	coenzyme Q2 4-hydroxybenzoate polyprenyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-121719041-4	chr9	121718944	121719144	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010918)	promoter-TSS (NM_010918)	-137.0	NM_010918	18087.0	Mm.32842	NM_010918	ENSMUSG00000032525	Nktr	5330401F18Rik|D9Wsu172e	natural killer tumor recognition sequence	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-76832845-2	chr12	76832745	76832945	+	816.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4622.0	NM_145927	110606.0	Mm.151174	NM_145927	ENSMUSG00000033373	Fntb	2010013E13Rik|AA409500	farnesyltransferase, CAAX box, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72741100-2	chr6	72741000	72741200	+	610.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001079822, intron 3 of 12)	intron (NM_001079822, intron 3 of 12)	47945.0	NM_001079822	21415.0	Mm.440067	NM_009332	ENSMUSG00000055799	Tcf7l1	Tcf-3|Tcf3|bHLHb21	transcription factor 7 like 1 (T cell specific, HMG box)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117405455-4	chr8	117405373	117405573	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028941, intron 3 of 20)	L1MB7|LINE|L1	-47550.0	NR_106045	102466801.0		NR_106045	ENSMUSG00000099062	Mir7077	Gm27774|mmu-mir-7077	microRNA 7077	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-27380969-3	chr14	27380838	27381038	+	855.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027871, intron 4 of 10)	L1ME4b|LINE|L1	19549.0	NM_001289688	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-78019883-2	chr11	78019783	78019983	+	824.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_174852, intron 7 of 14)	intron (NM_174852, intron 7 of 14)	-12430.0	NM_183286	70451.0	Mm.390342	NM_183286	ENSMUSG00000020834	Dhrs13	2610209N15Rik	dehydrogenase/reductase (SDR family) member 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-65951335-2	chr5	65951235	65951435	+	771.375	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15789.0	NM_001081104	231252.0	Mm.140015	NM_001081104	ENSMUSG00000029205	Chrna9	2410015I05Rik|Acra9|EG666827|Gm8311	cholinergic receptor, nicotinic, alpha polypeptide 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-11284087-2	chr10	11283987	11284187	+	566.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001168297, intron 1 of 2)	MTD|LTR|ERVL-MaLR	2500.0	NM_001168297	71865.0	Mm.276229	NM_027968	ENSMUSG00000047648	Fbxo30	1700026A16Rik|MUSA1	F-box protein 30	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-13291759-3	chr1	13291602	13291802	+	867.6555789999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008678, intron 1 of 22)	intron (NM_008678, intron 1 of 22)	80727.0	NM_001302702	17978.0	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	-0.202500471717358	-0.655583835598239	-0.658889288426782	-0.661433489785496	-0.665019621783252	-0.654837534854276	-0.658161001983565	-0.130974292714595	0.263984665833299	0.928154930818539	1
Merged-chr9-123924247-4	chr9	123924158	123924358	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44434.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-98050855-3	chr3	98050755	98050955	+	920.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010928, intron 2 of 33)	intron (NM_010928, intron 2 of 33)	37317.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118275929-2	chr11	118275829	118276029	+	833.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033528, intron 9 of 20)	intron (NM_001033528, intron 9 of 20)	14315.0	NM_001033528	72344.0	Mm.232293	NM_001033528	ENSMUSG00000033909	Usp36	2700002L06Rik|mKIAA1453	ubiquitin specific peptidase 36	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-116464811-4	chr4	116464711	116464911	+	975.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008641)	promoter-TSS (NM_008641)	-630.0	NM_008641	17776.0	Mm.9287	NM_008641	ENSMUSG00000003810	Mast2	MAST205|Mtssk	microtubule associated serine/threonine kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-108759969-2	chr12	108759869	108760069	+	990.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR17B_Mm|LTR|ERVK	-33342.0	NM_009537	22632.0	Mm.3868	NM_009537	ENSMUSG00000021264	Yy1	AW488674|NF-E1	YY1 transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-84576958-3	chr10	84576856	84577056	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146008)	promoter-TSS (NM_146008)	9.0	NM_146008	216198.0	Mm.296142	NM_146008	ENSMUSG00000020034	Tcp11l2	E430026E19Rik	t-complex 11 (mouse) like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67031391-4	chr10	67031300	67031500	+	976.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110511, intron 3 of 6)	intron (NR_110511, intron 3 of 6)	26325.0	NR_110511	102634101.0	Mm.445258	NR_110511	ENSMUSG00000112925	Gm31763	-	predicted gene, 31763	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-69532742-1	chr12	69532642	69532842	+	739.0	f0_c57.idr	Intergenic	Intergenic	50286.0	NM_001033236	207965.0	Mm.102487	NM_001033236	ENSMUSG00000049882	Vcpkmt	Gm71|Mettl21d|Mettl221d|VCP-KMT	valosin containing protein lysine (K) methyltransferase	protein-coding	0.387277208478157	-0.333747597280279	0.24751221970849	-0.341958686752363	-0.347024581321487	-0.332704512860643	-0.337357346421112	-0.341333093874177	-3.71746866451724	0.148311550319898	1
Merged-chr9-111056126-4	chr9	111056028	111056228	+	974.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001302376, exon 3 of 3)	exon (NM_001302376, exon 3 of 3)	1116.0	NM_001302377	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	2.28141319820263	3.44496188726236	2.87552806113743	3.08225237165717	2.9493966843168	3.46944675316265	2.1424206046836	3.33010500990511	0.146231521822746	0.833602437225767	0.998431161219273
Merged-chr10-7474431-4	chr10	7474334	7474534	+	924.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029975)	promoter-TSS (NM_029975)	-957.0	NM_029975	77777.0	Mm.442442	NM_029975	ENSMUSG00000079685	Ulbp1	A430108B07Rik|MULT1	UL16 binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-47076277-2	chr7	47076177	47076377	+	682.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6947.0	NR_106023	102465639.0		NR_106023	ENSMUSG00000098960	Mir7056	Gm27696|mmu-mir-7056	microRNA 7056	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139253466-3	chr5	139253353	139253553	+	851.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163316)	promoter-TSS (NM_001163316)	-44.0	NM_001163316	67604.0	Mm.270137	NM_026269	ENSMUSG00000025858	Get4	1110007L15Rik|AW412535|Cee	golgi to ER traffic protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-66225232-6	chr14	66225148	66225348	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	-11424.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167055246-3	chr2	167055121	167055321	+	771.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001033196, exon 3 of 14)	exon (NM_001033196, exon 3 of 14)	-7713.0	NR_138563	68949.0	Mm.391959	NM_001081005		Zfas1	1500012F01Rik|Zfos1	zinc finger, NFX1-type containing 1, antisense RNA 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-130929955-2	chr7	130929855	130930055	+	643.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6248.0	NM_019564	56213.0	Mm.30156	NM_019564	ENSMUSG00000006205	Htra1	AI429470|HTRA|L56|Prss11|RSPP11	HtrA serine peptidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129380039-2	chr4	129379939	129380139	+	869.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2011.0	NM_028603	73680.0	Mm.32997	NM_028603	ENSMUSG00000028807	Zbtb8a	2410081M15Rik|AI480941	zinc finger and BTB domain containing 8a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-67451573-4	chr7	67451424	67451624	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-78666.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	7.01781379200694	6.9810178900127	7.02179197499688	6.24666337207524	6.75386789237669	5.79949375951814	7.17088813339018	6.42656018386904	-0.238890619800522	0.356344943665749	0.85378439273359
Merged-chr17-84062755-2	chr17	84062655	84062855	+	556.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC3|LINE|L1	-15905.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-25846764-4	chr16	25846678	25846878	+	991.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127262, intron 2 of 10)	intron (NM_001127262, intron 2 of 10)	44862.0	NM_001127264	22061.0	Mm.20894	NM_011641	ENSMUSG00000022510	Trp63	AI462811|Ket|P51/P63|P63|P73l|Tp63|Trp53rp1	transformation related protein 63	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41381885-4	chr19	41381804	41382004	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 1 of 16)	intron (NM_031376, intron 1 of 16)	3166.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	5.91741899679494	5.46806828171512	4.52592375532679	6.08081970599896	5.57177552226765	6.13394449164626	5.55754377540805	6.12201847180121	0.279054611402773	0.386594160898323	0.876478988598962
Merged-chr10-21192579-3	chr10	21192468	21192668	+	735.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	5624.0	NR_152786	102636600.0	Mm.227606	NR_152786	ENSMUSG00000111005	Gm33619	-	predicted gene, 33619	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-108639400-4	chr12	108639354	108639554	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163396, intron 2 of 14)	intron (NM_001163396, intron 2 of 14)	3701.0	NM_001163396	14026.0	Mm.238841	NM_007965	ENSMUSG00000021262	Evl	AI528774|b2b2600Clo	Ena-vasodilator stimulated phosphoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-155757490-2	chr2	155757420	155757620	+	796.083374	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	6303.0	NM_011171	19124.0	Mm.3243	NM_011171	ENSMUSG00000027611	Procr	AI325044|Ccca|Ccd41|Epcr	protein C receptor, endothelial	protein-coding	1.67554935828256	1.92366876043316	1.63899075026882	1.00652508506128	0.771840046862033	1.72266384115166	0.808834383966896	0.793868990003383	-1.79809386560451	0.201787172249192	0.68736305681282
Merged-chr18-61727162-2	chr18	61727089	61727289	+	715.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021296)	promoter-TSS (NM_021296)	799.0	NR_029432	68982.0	Mm.441992	NR_029432	ENSMUSG00000098702	1500015A07Rik	-	RIKEN cDNA 1500015A07 gene	ncRNA	0.0485938370281229	-0.216580600280397	-0.221792186304011	-0.225824676070735	0.055433061176785	-0.215408111722388	0.673470924973767	-0.225119463375056	2.33013677673672	0.326980640606949	1
Merged-chr3-52179997-3	chr3	52179922	52180122	+	825.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-75016.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135943982-2	chr4	135943882	135944082	+	613.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2466.0	NM_008254	15356.0	Mm.482102	NM_008254	ENSMUSG00000028672	Hmgcl	AW476067|HL	3-hydroxy-3-methylglutaryl-Coenzyme A lyase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46645830-3	chr19	46645641	46645841	+	877.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177813, intron 2 of 3)	intron (NM_001177813, intron 2 of 3)	22340.0	NM_001177813	226178.0	Mm.329895	NM_146099	ENSMUSG00000047731	Wbp1l	D19Wsu162e|Opal1	WW domain binding protein 1 like	protein-coding	0.563474151162986	0.461201822962541	0.86681590077789	0.0907568841186466	0.2335389070051	0.102845359888102	0.0967685981289296	0.0915743864480062	-3.27129157522919	0.109193841843559	1
Merged-chr5-125334803-3	chr5	125334726	125334926	+	866.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205083, intron 1 of 10)	intron (NM_001205083, intron 1 of 10)	6268.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	1.77767183175798	2.44263753349046	1.93459432671192	1.49157446217664	2.87985062862982	2.46168993359407	2.99481494190736	1.24196358155233	1.33607571116571	0.167088129536932	0.633286287152144
Merged-chr11-69768430-2	chr11	69768330	69768530	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029348, intron 1 of 3)	MIR|SINE|MIR	2518.0	NM_029348	75580.0	Mm.426361	NM_029348	ENSMUSG00000018750	Zbtb4	2310026P19Rik|9230111I22Rik|mKIAA1538	zinc finger and BTB domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70781017-2	chr8	70780867	70781067	+	765.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_199308, exon 23 of 26)	exon (NM_199308, exon 23 of 26)	4105.0	NR_029440	72093.0	Mm.271208	NR_029440		2010320M18Rik	-	RIKEN cDNA 2010320M18 gene	ncRNA	1.06870935105196	1.2120956028446	0.701456192992815	1.13020000928046	1.07799907604765	0.712959847390703	1.17645592328435	1.2474639834565	0.138025583477582	0.923180430837539	0.998431161219273
Merged-chr8-106902107-2	chr8	106902007	106902207	+	994.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358982, intron 5 of 16)	intron (NM_001358982, intron 5 of 16)	8467.0	NM_001358982	21771.0	Mm.10665	NM_011574	ENSMUSG00000041438	Utp4	Cirh1a|Cirhin|Naic|Teg-292|Tex292	UTP4 small subunit processome component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-130791109-2	chr4	130791009	130791209	+	696.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-1428.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-75789626-4	chr13	75789533	75789733	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50252.0	NM_001360151	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	2.13194283299867	1.66838030893227	2.84296167298531	1.78249965942341	1.50558190930539	2.55514793356765	3.16012877754405	2.8549112616808	0.94056145092877	0.29797805855122	0.800257675359925
Merged-chr11-120901340-2	chr11	120901240	120901440	+	576.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027745, intron 7 of 18)	L1MB3|LINE|L1	31532.0	NM_027745	71276.0	Mm.275751	NM_027745	ENSMUSG00000048445	Ccdc57	4933434G05Rik	coiled-coil domain containing 57	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-8567351-4	chr11	8567237	8567437	+	969.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 4 of 30)	intron (NM_001083587, intron 4 of 30)	97198.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	4.48040315522511	4.45605037831741	3.59724799521267	4.76653430101467	4.43795899932344	4.240867653385	3.62672404399323	4.51423959471594	-0.184533611080478	0.673527829566689	0.99440487726309
Merged-chr2-30495109-2	chr2	30495009	30495209	+	594.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20910.0	NM_030244	72500.0	Mm.295464	NM_030244	ENSMUSG00000089762	Ier5l	2610524G09Rik	immediate early response 5-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-105559331-4	chr5	105559245	105559445	+	825.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133897, intron 2 of 3)	L1MA5|LINE|L1	39874.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-32780832-3	chr6	32780723	32780923	+	805.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-192631.0	NM_175750	243743.0	Mm.444029	NM_175750	ENSMUSG00000029765	Plxna4	9330117B14|Plxa4|mKIAA1550	plexin A4	protein-coding	0.247082954838627	0.0866573720697291	1.44293734507259	0.0681440193475433	0.0563625495602202	0.866940234707714	0.078603294202263	0.0695791990980281	-1.38607463060113	0.493014059583605	1
Merged-chr3-57550658-3	chr3	57550547	57550747	+	831.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133784, intron 2 of 6)	intron (NM_133784, intron 2 of 6)	25229.0	NM_133784	97064.0	Mm.405029	NM_133784	ENSMUSG00000027803	Wwtr1	2310058J06Rik|2610021I22Rik|C78399|Taz	WW domain containing transcription regulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98940447-2	chr11	98940347	98940547	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177303, intron 1 of 8)	intron (NM_001177303, intron 1 of 8)	736.0	NM_001177303	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-106148938-1	chr9	106148838	106149038	+	916.5	f1_balb.idr	Intergenic	Intergenic	-5186.0	NR_029549	387153.0		NR_029549	ENSMUSG00000065407	Mir135a-1	Mir135a01|Mirn135|Mirn135a-1|mir-135a-1	microRNA 135a-1	ncRNA	0.621259717766305	0.72737732963905	0.446649429080925	1.48956757518188	0.628244644630045	0.465802209804971	2.04193312619629	0.436397681194682	0.774282330720781	0.627241354348639	0.980912176761026
Merged-chr8-57487194-4	chr8	57487148	57487348	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_126555)	promoter-TSS (NR_126555)	612.0	NM_021788	60406.0	Mm.118	NM_021788	ENSMUSG00000031609	Sap30	30kDa	sin3 associated polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-128841048-3	chr6	128840961	128841161	+	800.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14746.0	NM_030599	80782.0	Mm.6180	NM_030599	ENSMUSG00000079298	Klrb1b	Klrb1d|Ly55b|Ly55d|NKR-P1B|NKR-P1D|Nkrp1-b|Nkrp1b|Nkrp1d|ly-55b|ly-55d	killer cell lectin-like receptor subfamily B member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-34441910-1	chr18	34441810	34442010	+	713.5	f1_balb.idr	TTS (NM_001163004)	TTS (NM_001163004)	32487.0	NM_016927	53871.0	Mm.445792	NM_016927	ENSMUSG00000014503	Pkd2l2	TRPP5	polycystic kidney disease 2-like 2	protein-coding	-1.08442814443595	-1.19668122519392	-1.20670852618424	-1.06055078801204	-1.08086552551595	-1.19450826723944	-1.20443856503221	-1.05804698911564	0.0367053573363311	0.990062574807593	1
Merged-chr17-80205767-1	chr17	80205667	80205867	+	555.0	f0_balb.idr	intron (NM_001360435, intron 2 of 6)	intron (NM_001360435, intron 2 of 6)	1538.0	NM_001195486	225027.0	Mm.292016	NM_146083	ENSMUSG00000024097	Srsf7	35kDa|9430065L19Rik|9G8|NX-96|Sfrs7	serine/arginine-rich splicing factor 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-10841285-4	chr8	10841175	10841375	+	988.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41179.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-153408074-4	chr3	153407972	153408172	+	886.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011372, intron 3 of 4)	intron (NM_011372, intron 3 of 4)	-109423.0	NR_126464	75489.0	Mm.443252	NR_126464	ENSMUSG00000105023	1700012D16Rik	-	RIKEN cDNA 1700012D16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140757221-2	chr5	140757121	140757321	+	775.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	33094.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120431198-2	chr8	120431098	120431298	+	699.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57668.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47386779-2	chr17	47386679	47386879	+	857.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146079, intron 1 of 3)	B3A|SINE|B2	1386.0	NM_146079	107477.0	Mm.59151	NM_146079	ENSMUSG00000023979	Guca1b	BC018258|GCAP2	guanylate cyclase activator 1B	protein-coding	1.65643204119404	1.75088100495199	2.2582707802281	1.75297407936416	0.946669716774759	1.24970525340858	0.986770098719996	1.64553645480404	-2.23859095113126	0.0676823670371797	0.390265797169282
Merged-chr17-35267686-3	chr17	35267605	35267805	+	748.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010380)	TTS (NM_010380)	4582.0	NM_001267808	14980.0	Mm.439675	NM_001267808		H2-L	H-2L	histocompatibility 2, D region locus L	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-145254577-4	chr4	145254470	145254670	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M5|LINE|L1	-7700.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65539960-2	chr9	65539860	65540060	+	910.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40127.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-124651312-4	chr2	124651266	124651466	+	829.229187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291000, intron 1 of 18)	intron (NM_001291000, intron 1 of 18)	-2215.0	NM_199240	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-62646196-4	chr2	62646111	62646311	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027835)	promoter-TSS (NM_027835)	44.0	NM_027835	71586.0	Mm.136224	NM_027835	ENSMUSG00000026896	Ifih1	9130009C22Rik|Helicard|Hlcd|MDA5|RLR-2	interferon induced with helicase C domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-106155302-4	chr8	106155208	106155408	+	960.8250119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357319, intron 2 of 5)	intron (NM_001357319, intron 2 of 5)	4954.0	NM_001357319	192654.0	Mm.284770	NM_133792	ENSMUSG00000031903	Pla2g15	ACS|C87498|LLPL|Lpla2|Lypla3	phospholipase A2, group XV	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-24587333-2	chr5	24587233	24587433	+	695.5	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_133913, exon 1 of 4)	5' UTR (NM_133913, exon 1 of 4)	583.0	NM_133913	100910.0	Mm.140672	NM_133913	ENSMUSG00000038181	Chpf2	2010209O12Rik|AW060945|Gm42230|mKIAA1402|mir-671	chondroitin polymerizing factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-98202390-4	chr4	98202257	98202457	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	180908.0	NM_053157	94043.0	Mm.331719	NM_053157	ENSMUSG00000028563	Tm2d1	2310026L18Rik|AA990549|Bbp	TM2 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-86790617-3	chr6	86790528	86790728	+	807.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013471, intron 1 of 12)	intron (NM_013471, intron 1 of 12)	2956.0	NM_013471	11746.0	Mm.259702	NM_013471	ENSMUSG00000029994	Anxa4	AI265406|AIV|AW106930|Anx4|Xanx-4	annexin A4	protein-coding	1.80205155390677	2.22424801602822	2.69630470782429	2.50616740146235	3.51507584199472	1.80612825722314	2.9198220617562	3.07225602182044	1.21433151905564	0.130299785878019	0.56544727863238
Merged-chr10-93180132-4	chr10	93180021	93180221	+	942.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146239, intron 1 of 16)	MTB_Mm|LTR|ERVL-MaLR	17336.0	NR_035452	100316689.0		NR_035452	ENSMUSG00000089214	Mir1931	mir-1931|mmu-mir-1931	microRNA 1931	ncRNA	1.9270527014788	1.78598199044807	1.72878297820942	1.81279802415729	2.32446186427277	1.19699294528652	1.99933025683148	1.54177045625309	0.118407270869976	0.910542076284993	0.998431161219273
Merged-chr10-81381267-2	chr10	81381167	81381367	+	639.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2897.0	NM_019757	56371.0	Mm.24202	NM_019757	ENSMUSG00000020235	Fzr1	AW108046|Cdh1|FZR|FZR2|Fyr|HCDH|HCDH1	fizzy and cell division cycle 20 related 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-137566056-3	chr6	137565921	137566121	+	727.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271588, intron 1 of 20)	intron (NM_001271588, intron 1 of 20)	4988.0	NM_001271595	13860.0	Mm.235346	NM_007945	ENSMUSG00000015766	Eps8	AW261790	epidermal growth factor receptor pathway substrate 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-43769108-4	chr13	43769005	43769205	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER5|LTR|ERV1	-16007.0	NM_009856	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-124705096-4	chr2	124705005	124705205	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51524.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-89017988-3	chr11	89017895	89018095	+	831.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009546, exon 9 of 9)	3' UTR (NM_009546, exon 9 of 9)	18592.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	-1.02623923925007	-0.0785174723847883	-1.01664411116562	-1.02119558009008	-1.02548487198161	-0.999699361692546	-1.0134913975053	-1.0206685408436	-3.25251655617119	0.303463431741018	1
Merged-chr11-62185129-3	chr11	62185028	62185228	+	979.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029936, intron 10 of 12)	intron (NM_001029936, intron 10 of 12)	-63856.0	NM_007413	11541.0	Mm.40740	NM_007413	ENSMUSG00000018500	Adora2b	A2BAR|A2BR|A2b|AA2BR|AI480866|AI605384	adenosine A2b receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30626182-4	chr2	30626077	30626277	+	916.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2-int|LTR|ERVL-MaLR	31133.0	NM_030137	78617.0	Mm.40413	NM_030137	ENSMUSG00000047363	Cstad	9530039B02Rik	CSA-conditional, T cell activation-dependent protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55807990-3	chr19	55807898	55808098	+	915.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001331146, intron 4 of 14)	(T)n|Simple_repeat|Simple_repeat	66188.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	1.70205982620444	1.6121647515375	0.879217782551459	0.866943340466937	1.53774336347604	1.62550772883162	0.882688951896556	1.72563095687401	0.517403469133414	0.706937154187419	0.998431161219273
Merged-chr4-32564567-4	chr4	32564478	32564678	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109661, intron 3 of 4)	intron (NM_001109661, intron 3 of 4)	7084.0	NR_026843	414068.0	Mm.389550	NR_026843	ENSMUSG00000086150	Bach2os	-	BTB and CNC homology 2, opposite strand	ncRNA	4.37205507552626	4.19206056061525	4.4206599122218	4.54437277150917	4.44709737271987	4.59512046422664	5.1111805578181	4.21350063893693	0.304362984525268	0.430439096145818	0.904223090525788
Merged-chr14-75131088-4	chr14	75130995	75131195	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027581)	promoter-TSS (NM_027581)	-28.0	NM_001247984	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-76337107-4	chr16	76337020	76337220	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358238, intron 2 of 3)	intron (NM_001358238, intron 2 of 3)	35929.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-34711637-4	chr13	34711546	34711746	+	946.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27996.0	NM_138746	108161.0	Mm.41991	NM_138746	ENSMUSG00000038246	Fam50b	D0H6S2654E|X5L|XAP-5-like	family with sequence similarity 50, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-49269401-4	chr6	49269300	49269500	+	902.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5348.0	NM_001362188	101214.0	Mm.196598	NM_198102	ENSMUSG00000029817	Tra2a	1500010G04Rik|AL022798|G430041M01Rik|mAWMS1	transformer 2 alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-17413846-2	chr14	17413746	17413946	+	875.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-247114.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-56301773-3	chr12	56301648	56301848	+	893.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44146.0	NM_145442	217588.0	Mm.25656	NM_145442	ENSMUSG00000021028	Mbip	4933408E06Rik	MAP3K12 binding inhibitory protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150867242-2	chr4	150867142	150867342	+	828.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_133753, exon 4 of 4)	exon (NM_133753, exon 4 of 4)	12172.0	NM_133753	74155.0	Mm.318841	NM_133753	ENSMUSG00000028967	Errfi1	1300002F13Rik|AI788755|Mig-6|Mig6|RALT	ERBB receptor feedback inhibitor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80118497-2	chr10	80118397	80118597	+	857.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301853, intron 1 of 8)	intron (NM_001301853, intron 1 of 8)	2694.0	NM_001301854	20869.0	Mm.44231	NM_011492	ENSMUSG00000003068	Stk11	AA408040|Lkb1|Par-4|R75140	serine/threonine kinase 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-75437177-4	chr9	75437118	75437318	+	761.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4306.0	NM_001039522	235497.0	Mm.41508	NM_001006122	ENSMUSG00000042487	Leo1	Gm185	Leo1, Paf1/RNA polymerase II complex component	protein-coding	1.88573000601079	1.78745304455811	2.15437660273255	2.46610035233434	2.1103079051019	1.79880817908752	2.17061292535523	1.98840493897263	-0.215022044253952	0.813045964579704	0.998431161219273
Merged-chr18-9373430-2	chr18	9373330	9373530	+	653.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026484, intron 3 of 9)	intron (NM_026484, intron 3 of 9)	76724.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-34389267-2	chr7	34389167	34389367	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025948, intron 1 of 10)	CpG	438.0	NM_001360654	67070.0	Mm.276503	NM_025948	ENSMUSG00000066568	Lsm14a	2700023B17Rik|AA407828|AU017544|Tral|mRAP55A	LSM14A mRNA processing body assembly factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-152131060-3	chr4	152130952	152131152	+	938.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_207691, exon 4 of 10)	exon (NM_207691, exon 4 of 10)	-2127.0	NM_019585	56226.0	Mm.264215	NM_019585	ENSMUSG00000028943	Espn	je	espin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-25073174-3	chr9	25072986	25073186	+	662.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	78695.0	NM_020586	80517.0	Mm.142843	NM_020586	ENSMUSG00000008429	Herpud2	5031400M07Rik|AB041580	HERPUD family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-8714121-3	chr15	8714023	8714223	+	794.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3316.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-97992577-2	chr3	97992477	97992677	+	559.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20961.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-129349641-4	chr6	129349536	129349736	+	857.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177686)	promoter-TSS (NM_177686)	-608.0	NM_177686	232413.0	Mm.90241	NM_177686	ENSMUSG00000053063	Clec12a	CLL-1|D230024O04|KLRL1|Micl	C-type lectin domain family 12, member a	protein-coding	1.83657994105976	1.27613107202687	1.6795143922215	2.35426262814993	2.07022033222778	1.92072952611108	2.003898779156	2.66581531428989	0.908791470953908	0.357102227969082	0.853942173366938
Merged-chr19-6271457-4	chr19	6271345	6271545	+	859.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5451.0	NM_010119	13660.0	Mm.30169	NM_010119	ENSMUSG00000024772	Ehd1	AA409636|Past1|RME-1	EH-domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-114824349-4	chr5	114824299	114824499	+	817.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181075)	promoter-TSS (NM_181075)	-931.0	NM_181075	330173.0	Mm.482205	NM_181075	ENSMUSG00000092486	2610524H06Rik	-	RIKEN cDNA 2610524H06 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-142560557-4	chr3	142560519	142560719	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001289493, exon 1 of 11)	5' UTR (NM_001289493, exon 1 of 11)	263.0	NM_001289493	55932.0	Mm.439718	NM_018734	ENSMUSG00000028268	Gbp3	AW228655|GBP-3|GBP-4|Gbp4	guanylate binding protein 3	protein-coding	5.46410047837898	5.12519838722292	5.45771065712539	4.99366971866997	6.02778159514757	5.65517631640173	6.56462934152311	5.70882106380093	0.855665820822277	0.00294307419215091	0.0448868696916439
Merged-chr10-40141659-2	chr10	40141559	40141759	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 1 of 5)	intron (NM_001114332, intron 1 of 5)	595.0	NM_028247	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91826000-4	chr16	91825919	91826119	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110276, intron 14 of 15)	intron (NM_001110276, intron 14 of 15)	96648.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-36720224-4	chr7	36720113	36720313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172298, intron 1 of 1)	intron (NM_172298, intron 1 of 1)	22095.0	NM_172298	243931.0	Mm.44141	NM_172298	ENSMUSG00000021217	Tshz3	A630038G13Rik|Tsh3|Zfp537|mKIAA1474|teashirt3	teashirt zinc finger family member 3	protein-coding	3.93445222084239	4.4856191360134	4.48473942985608	4.56867103058051	3.12767610341068	3.89797509698827	2.91557815633145	3.0788242859408	-1.52941355597367	0.0017872069551315	0.0306911866140282
Merged-chr19-24265197-4	chr19	24265123	24265323	+	800.75415	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008044, intron 4 of 4)	B3A|SINE|B2	15363.0	NM_008044	14297.0	Mm.7319	NM_008044	ENSMUSG00000059363	Fxn	FA|FARR|Frda|X25	frataxin	protein-coding	3.01937351216997	2.66382170018108	2.88461749573614	2.96839363940922	2.13789796143467	1.80549736998876	3.22560307193623	1.69642698218665	-0.979417343293663	0.229322572315979	0.722661238657097
Merged-chr1-132306372-2	chr1	132306272	132306472	+	738.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_144810, exon 5 of 5)	3' UTR (NM_144810, exon 5 of 5)	7746.0	NM_144810	213417.0	Mm.39723	NM_144810	ENSMUSG00000042115	Klhdc8a	A630065K24Rik	kelch domain containing 8A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-134784632-4	chr1	134784542	134784742	+	780.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081307, intron 18 of 23)	intron (NM_001081307, intron 18 of 23)	19079.0	NR_015606	329251.0	Mm.188709	NM_001081307	ENSMUSG00000073557	Ppp1r12b	1810037O03Rik|9530009M10Rik|AI132431|Mypt2	protein phosphatase 1, regulatory (inhibitor) subunit 12B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-118510792-2	chr2	118510692	118510892	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31096.0	NM_009273	20813.0	Mm.363404	NM_009273	ENSMUSG00000009549	Srp14	14kDa|AW536328	signal recognition particle 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-89455569-3	chr6	89455476	89455676	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167736, intron 4 of 6)	intron (NM_001167736, intron 4 of 6)	-92963.0	NM_008881	18844.0	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-36083727-4	chr19	36083627	36083827	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019428)	promoter-TSS (NM_019428)	11.0	NM_019428	54364.0	Mm.277891	NM_019428	ENSMUSG00000024800	Rpp30	Rnasep2|TSG15	ribonuclease P/MRP 30 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-103345510-1	chr2	103345410	103345610	+	559.5	f0_balb.idr	intron (NR_040332, intron 1 of 2)	intron (NR_040332, intron 1 of 2)	27254.0	NR_040332	319854.0	Mm.403818	NR_040332	ENSMUSG00000087278	A930006I01Rik	-	RIKEN cDNA A930006I01 gene	ncRNA	-1.20406370813143	-1.56956373024278	-1.57884638916872	-1.58647144159385	-1.598104728449	-1.56755213932999	-1.57674499865798	-1.58510656085539	-1.70745470802464	0.626337835847419	1
Merged-chr15-15851380-1	chr15	15851280	15851480	+	541.0	f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-926721.0	NM_009869	12565.0	Mm.439758	NM_009869	ENSMUSG00000025370	Cdh9	-	cadherin 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-106441116-2	chr7	106441019	106441219	+	1000.0	f0_balb.idr|f1_balb.idr	promoter-TSS (NR_003967)	promoter-TSS (NR_003967)	-46.0	NR_003967	209380.0	Mm.461779	NM_001001318		Gm4759	EG209380	GTPase, very large interferon inducible 1 pseudogene	pseudo	2.26536198949837	2.64868905044478	3.40650562946531	3.18533044625855	5.04995421727916	5.17979891592045	5.24304922949595	5.16074648639237	2.97249158036818	6.59060855842406e-11	1.46433558303652e-08
Merged-chr11-4639790-2	chr11	4639690	4639890	+	755.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029291, intron 1 of 19)	ID4_|SINE|ID	1997.0	NM_029291	75452.0	Mm.439906	NM_029291	ENSMUSG00000020412	Ascc2	1700011I11Rik|2610034L15Rik|AI482016|ASC1p100|AW046480	activating signal cointegrator 1 complex subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-66291826-3	chr18	66291718	66291918	+	934.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178793)	promoter-TSS (NM_178793)	20.0	NM_178793	320924.0	Mm.442049	NM_178793	ENSMUSG00000046318	Ccbe1	4933426F18Rik|9430093N24Rik|mKIAA1983	collagen and calcium binding EGF domains 1	protein-coding	1.40967026414316	0.502473576881949	0.691604372435715	1.36444009810984	0.905345917253197	0.504712598872563	0.494686598410082	0.674388576546412	-2.05481964111855	0.215725953111465	0.706180188649098
Merged-chr9-120020394-3	chr9	120020286	120020486	+	964.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011724, intron 1 of 2)	intron (NM_011724, intron 1 of 2)	3212.0	NM_011724	22437.0	Mm.10117	NM_011724	ENSMUSG00000079243	Xirp1	AI415219|Cmya1	xin actin-binding repeat containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5387449-1	chr19	5387349	5387549	+	816.0	f1_c57bl6.idr	promoter-TSS (NR_033224)	promoter-TSS (NR_033224)	-887.0	NR_033224	414115.0	Mm.483102	NR_033224		D330050I16Rik	-	RIKEN cDNA D330050I16 gene	ncRNA	-0.255677589424657	-0.240975690446996	-0.245786529116919	0.480142780171421	-0.104753434044791	0.27073612021323	-0.244725006027926	-0.248852635045006	-0.378152424883087	0.875234353877826	1
Merged-chr8-56063367-4	chr8	56063266	56063466	+	924.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080438, intron 5 of 9)	intron (NM_080438, intron 5 of 9)	122541.0	NM_080438	110304.0	Mm.307061	NM_080438	ENSMUSG00000038257	Glra3	-	glycine receptor, alpha 3 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-142343783-3	chr6	142343704	142343904	+	715.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1893.0	NM_183165	232491.0	Mm.490474	NM_183165	ENSMUSG00000041671	Pyroxd1	-	pyridine nucleotide-disulphide oxidoreductase domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-75797838-1	chr7	75797738	75797938	+	618.0	f1_c57bl6.idr	Intergenic	LTRIS2|LTR|ERV1	-50500.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-103306912-2	chr12	103306812	103307012	+	605.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7857.0	NR_136894	102632488.0	Mm.109435	NR_136894	ENSMUSG00000100789	Gm29508	-	predicted gene 29508	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-71787301-2	chr2	71787201	71787401	+	819.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001277970, exon 1 of 25)	exon (NM_001277970, exon 1 of 25)	362.0	NM_001277970	16403.0	Mm.225096	NM_008397	ENSMUSG00000027111	Itga6	5033401O05Rik|AI115430|Cd49f|VLA-6	integrin alpha 6	protein-coding	-0.0653474337985328	-0.0326257204496484	-0.0430556801332561	-0.0512900331039034	0.696216253826849	-0.0303108073873695	1.45422622144609	-0.049839287923917	4.55766463682765	0.0308736198566783	1
Merged-chr2-32601608-3	chr2	32601507	32601707	+	853.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025311, intron 1 of 4)	intron (NM_001025311, intron 1 of 4)	1898.0	NM_001025311	50935.0	Mm.88831	NM_016973	ENSMUSG00000026811	St6galnac6	ST6GalNAcVI|Siat7f	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-69700523-2	chr3	69700423	69700623	+	657.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR48|LTR|ERV1	-21532.0	NM_133787	97112.0	Mm.21062	NM_133787	ENSMUSG00000027787	Nmd3	C87860	NMD3 ribosome export adaptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-65413809-2	chr2	65413709	65413909	+	652.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49409.0	NR_105755	102466151.0		NR_105755	ENSMUSG00000099184	Mir6337	Gm27877|mmu-mir-6337	microRNA 6337	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-59244503-4	chr4	59244420	59244620	+	896.604126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15531.0	NR_105031	101055769.0	Mm.421401	NR_105031		Gm12596	-	predicted gene 12596	ncRNA	3.47497062594605	3.94360264954968	2.44582311866141	1.99197829745678	3.60981890449423	3.9711434610425	2.0792678703293	2.00419688597715	0.0241259512638488	0.97596920270078	0.998431161219273
Merged-chr12-111809025-2	chr12	111808925	111809125	+	573.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028875, intron 4 of 7)	intron (NM_028875, intron 4 of 7)	4854.0	NM_028875	74335.0	Mm.19082	NM_028875	ENSMUSG00000021287	Xrcc3	-	X-ray repair complementing defective repair in Chinese hamster cells 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-136146168-8	chr4	136146039	136146239	+	996.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008321)	TTS (NM_008321)	2317.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-100952340-2	chr12	100952240	100952440	+	912.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026681, intron 12 of 29)	intron (NM_026681, intron 12 of 29)	-44142.0	NM_001177673	238377.0	Mm.32160	NM_175493	ENSMUSG00000047415	Gpr68	BB131428|Ogr1	G protein-coupled receptor 68	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-84942393-3	chr3	84942280	84942480	+	923.1333619999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177774, intron 3 of 12)	intron (NM_001177774, intron 3 of 12)	-9831.0	NM_080428	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-53669945-4	chr9	53669801	53670001	+	836.270813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20C1_MM|LTR|ERVK	-2394.0	NM_027807	75717.0	Mm.218910	NM_027807	ENSMUSG00000032030	Cul5	4921514I20Rik|8430423K24Rik|AI852817|C030032G03Rik|C330021I08Rik|VACM-1|VACM1	cullin 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139410211-2	chr5	139410111	139410311	+	641.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177000, intron 1 of 1)	intron (NM_177000, intron 1 of 1)	3824.0	NM_177000	319772.0	Mm.440271	NM_177000	ENSMUSG00000044092	C130050O18Rik	-	RIKEN cDNA C130050O18 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-65789170-1	chr18	65789070	65789270	+	680.0	f1_c57bl6.idr	Intergenic	Intergenic	-11408.0	NM_025468	66286.0	Mm.27800	NM_025468	ENSMUSG00000024516	Sec11c	1810029G24Rik|Sec11l3	SEC11 homolog C, signal peptidase complex subunit	protein-coding	1.10137504239532	1.5901058118662	0.475209693351849	0.466859539903478	1.01412185490722	0.488277072750068	0.687617079808786	0.663637483453815	-1.28992541425438	0.432362318326023	0.904679012727573
Merged-chr9-78553165-3	chr9	78553048	78553248	+	905.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172773, intron 8 of 10)	intron (NM_172773, intron 8 of 10)	34897.0	NM_172773	235504.0	Mm.46932	NM_172773	ENSMUSG00000049624	Slc17a5	4631416G20Rik|4732491M05|AST|ISSD|NSD|SD|SIALIN|SIASD|SLD	solute carrier family 17 (anion/sugar transporter), member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56075582-2	chr17	56075482	56075682	+	945.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_024432, intron 1 of 11)	intron (NM_024432, intron 1 of 11)	3751.0	NM_024432	66530.0	Mm.28000	NM_024432	ENSMUSG00000019578	Ubxn6	1200008L11Rik|2210415J11Rik|AU040909|Ubxd1|Ubxdc2	UBX domain protein 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-75484883-3	chr10	75484784	75484984	+	976.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32497.0	NM_175133	68778.0	Mm.29382	NM_175133	ENSMUSG00000033416	Gucd1	1110038D17Rik	guanylyl cyclase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-63394570-2	chr4	63394470	63394670	+	630.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001045514, intron 3 of 21)	intron (NM_001045514, intron 3 of 21)	3670.0	NM_001305432	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-148873944-2	chr2	148873882	148874082	+	547.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009976, intron 1 of 2)	intron (NM_009976, intron 1 of 2)	1530.0	NM_009976	13010.0	Mm.4263	NM_009976	ENSMUSG00000027447	Cst3	CysC	cystatin C	protein-coding	-1.8429182434137	-1.8129848525291	-1.82203695700074	-1.54461076807193	-1.84081697472045	-1.81102322372834	-1.81998775896484	-1.82814164409203	-1.43114970378833	0.684630132144154	1
Merged-chr5-98229605-2	chr5	98229505	98229705	+	543.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24579.0	NM_010203	14176.0	Mm.5055	NM_010203	ENSMUSG00000029337	Fgf5	Fgf-5|HBGF-5|angora|go	fibroblast growth factor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-38515004-2	chr15	38514904	38515104	+	607.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301688, intron 1 of 11)	ID_B1|SINE|B4	4262.0	NM_001301688	54375.0	Mm.250214	NM_018745	ENSMUSG00000037458	Azin1	1700085L02Rik|AZI|Oazi|Oazin	antizyme inhibitor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116844130-2	chr11	116844030	116844230	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033398)	promoter-TSS (NM_033398)	615.0	NM_028865	74319.0	Mm.429312	NM_028865	ENSMUSG00000090266	Mettl23	1110005A03Rik|1500035B17Rik|4933424L15Rik	methyltransferase like 23	protein-coding	-1.50865488148137	-1.47610178681596	-1.48594611133376	-1.49403253259917	-1.35258228898051	-1.16417614753549	-1.48371757204438	-1.49258506705888	2.15710271411426	0.528357820340818	1
Merged-chr2-155696392-4	chr2	155696263	155696463	+	937.9285890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3979.0	NM_001163452	56407.0	Mm.234944	NM_019828	ENSMUSG00000038324	Trpc4ap	4833429F06Rik|D2Ertd113e|Trrp4ap|mFLJ00177|truss	transient receptor potential cation channel, subfamily C, member 4 associated protein	protein-coding	3.79841592950041	2.87542656200452	4.4113936214776	1.92496889901941	3.6698979352774	3.96812633997537	3.17509994687574	3.27093262353795	-0.0167421291870097	0.980016891785623	0.998431161219273
Merged-chr10-71347748-4	chr10	71347655	71347855	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347191)	promoter-TSS (NM_001347191)	-8.0	NM_001347191	69718.0	Mm.245867	NM_027184	ENSMUSG00000060733	Ipmk	2410017C19Rik|AA408208|Impk	inositol polyphosphate multikinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-102695482-7	chr13	102695392	102695592	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360519, intron 1 of 2)	intron (NM_001360519, intron 1 of 2)	1934.0	NM_008533	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	2.20916636100184	2.82802750160223	2.9110050866074	2.32947089964504	2.53988746706841	1.7723499344409	3.15860483195651	1.87827080312082	-0.257221635532247	0.757814628295662	0.998431161219273
Merged-chr5-124010359-2	chr5	124010249	124010449	+	848.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177876, intron 2 of 3)	intron (NM_177876, intron 2 of 3)	13497.0	NR_105999	102465625.0		NR_105999	ENSMUSG00000098454	Mir7032	Gm27309|mmu-mir-7032	microRNA 7032	ncRNA	2.03823015313719	2.04205604846517	2.21503357308561	2.50532718820258	1.16536228845324	1.72503873668444	1.47010236867363	2.4400391381686	-1.0533442557362	0.303657756540262	0.805462835517226
Merged-chr1-63113716-7	chr1	63113644	63113844	+	989.595215	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045915)	promoter-TSS (NR_045915)	523.0	NM_001081436	227195.0	Mm.74718	NM_001081436	ENSMUSG00000040865	Ino80d	7330405I11|A430093A21Rik|BC010584	INO80 complex subunit D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-102888572-1	chr13	102888472	102888672	+	540.0	f0_balb.idr	intron (NM_175171, intron 4 of 28)	intron (NM_175171, intron 4 of 28)	128317.0	NR_130171	76624.0	Mm.426384	NR_130171	ENSMUSG00000091906	1700099I09Rik	-	RIKEN cDNA 1700099I09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-55589240-1	chr9	55589140	55589340	+	582.0	f0_balb.idr	intron (NM_001357652, intron 28 of 32)	intron (NM_001357652, intron 28 of 32)	-32460.0	NM_001357653	244891.0	Mm.86588	NM_175536	ENSMUSG00000034007	Scaper	C430017I08|D530014O03Rik|Zfp291	S phase cyclin A-associated protein in the ER	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-145824970-4	chr2	145824869	145825069	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028724, intron 4 of 12)	intron (NM_028724, intron 4 of 12)	38853.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-110698623-4	chr11	110698522	110698722	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	219282.0	NM_001356346	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-55203357-4	chr6	55203273	55203473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177883)	promoter-TSS (NM_177883)	-10.0	NM_177883	330323.0	Mm.268997	NM_177883	ENSMUSG00000038022	Mindy4	C330043M08Rik|Fam188b|Gm1406	MINDY lysine 48 deubiquitinase 4	protein-coding	0.983710072298061	1.41841843571435	1.49484825800506	1.7441675764216	1.26662089568394	0.858572378103433	0.844443003320894	1.66473803633597	-0.843545316822323	0.528443463424688	0.949209944897898
Merged-chr18-17732217-3	chr18	17732119	17732319	+	993.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-151229.0	NR_045374	75162.0	Mm.60874	NR_045374		4930545E07Rik	-	RIKEN cDNA 4930545E07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-88246142-2	chr1	88246069	88246269	+	603.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001281466, intron 24 of 41)	intron (NM_001281466, intron 24 of 41)	19149.0	NM_001281466	100040766.0	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	Heatr7b1	maestro heat-like repeat family member 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-165670363-2	chr1	165670263	165670463	+	818.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038846, intron 1 of 5)	intron (NM_001038846, intron 1 of 5)	-35822.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-107095869-3	chr8	107095814	107096014	+	905.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_106043)	TTS (NR_106043)	192.0	NR_106043	102465652.0		NR_106043	ENSMUSG00000098671	Mir7075	Gm27821|mmu-mir-7075	microRNA 7075	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-102807724-2	chr14	102807624	102807824	+	553.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	174908.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-92772409-3	chr8	92772382	92772582	+	880.2666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1I|LTR|ERVL-MaLR	-54815.0	NM_008610	17390.0	Mm.29564	NM_008610	ENSMUSG00000031740	Mmp2	Clg4a|GelA|MMP-2	matrix metallopeptidase 2	protein-coding	2.16271555331018	2.66741780843628	1.52831754746351	1.69806522462563	2.76418962688112	3.17494896291152	1.53995287764562	1.70706105929824	0.844312644896999	0.377551305440933	0.870568974249899
Merged-chr4-136239838-4	chr4	136239737	136239937	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001008232, intron 17 of 24)	intron (NM_001008232, intron 17 of 24)	-8120.0	NM_011542	21401.0	Mm.112	NM_011542	ENSMUSG00000001604	Tcea3	S-II|SII-K1	transcription elongation factor A (SII), 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101550863-4	chr7	101550761	101550961	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4941.0	NM_007490	11871.0	Mm.439746	NM_007490	ENSMUSG00000092517	Art2a-ps	ARTC2|Art2a|Ly92a|Rt-6|Rt6|Rt6-1	ADP-ribosyltransferase 2a, pseudogene	protein-coding	5.11768858725284	4.56586976001324	5.94137072261649	4.9420049572761	5.40069875675187	4.59868639522567	5.7450396766478	5.00146234901979	0.0173967352664412	0.962475703496863	0.998431161219273
Merged-chr5-134520317-4	chr5	134520235	134520435	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039162, intron 3 of 15)	intron (NM_001039162, intron 3 of 15)	32099.0	NM_001039162	269713.0	Mm.255138	NM_009990	ENSMUSG00000063146	Clip2	B230327O20|CLIP-115|Clip1|Cyln2|WSCR4|mKIAA0291|wbscr4	CAP-GLY domain containing linker protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-87906788-4	chr3	87906689	87906889	+	986.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001331052)	promoter-TSS (NM_001331052)	-61.0	NM_001331051	15191.0	Mm.292208	NM_008231	ENSMUSG00000004897	Hdgf	AI118077|D3Ertd299e	hepatoma-derived growth factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-122722316-3	chr10	122722216	122722416	+	824.122253	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110218, intron 1 of 9)	MLT1B|LTR|ERVL-MaLR	43001.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	2.63519422368119	3.06301588171419	1.29183733611376	1.53015708657084	2.14522167162367	3.50193833562451	1.59110193047832	2.80190883709264	0.696324057771347	0.472827078361173	0.926125823511231
Merged-chr13-52252855-4	chr13	52252766	52252966	+	871.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	156125.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-127826196-2	chr8	127826096	127826296	+	853.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RCHARR1|DNA|hAT-Charlie	452029.0	NR_105822	102465212.0		NR_105822	ENSMUSG00000099326	Mir21c	Gm28013|mmu-mir-21c	microRNA 21c	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-65662040-2	chr17	65661940	65662140	+	734.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133685, intron 6 of 6)	MTD|LTR|ERVL-MaLR	-19836.0	NM_001146002	213272.0	Mm.255732	NM_153519	ENSMUSG00000050612	Txndc2	AU021712|Sptrx-1|Sptrx1|Trx4	thioredoxin domain containing 2 (spermatozoa)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-176996971-4	chr1	176996888	176997088	+	810.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357390, intron 17 of 18)	intron (NM_001357390, intron 17 of 18)	-160855.0	NR_037996	15365.0	Mm.441435	NR_037996		Hmga2-ps1	EG666235|Gm7996|Hmgic-ps1|[y]i-c	high mobility group AT-hook 2, pseudogene 1	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-125439416-4	chr1	125439287	125439487	+	826.633301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3660.0	NM_001205385	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-11037620-1	chr8	11037520	11037720	+	785.0	f0_balb.idr	intron (NR_046017, intron 1 of 4)	intron (NR_046017, intron 1 of 4)	-29190.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-157422059-1	chr2	157421959	157422159	+	689.0	f1_balb.idr	Intergenic	Intergenic	-2234.0	NM_009271	20779.0	Mm.22845	NM_009271	ENSMUSG00000027646	Src	AW259666|pp60c-src	Rous sarcoma oncogene	protein-coding	1.29508272886093	0.696394379130727	0.885520358501079	0.675519099614295	1.39771070783273	1.38898907367315	0.687272653371719	1.48607130269861	1.57963592719871	0.298484643068033	0.800257675359925
Merged-chr16-17127467-3	chr16	17127358	17127558	+	855.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2256.0	NM_001358255	70458.0	Mm.234165	NM_183287	ENSMUSG00000049916	2610318N02Rik	AL033325	RIKEN cDNA 2610318N02 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-38988664-3	chr1	38988544	38988744	+	794.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026850, intron 1 of 5)	intron (NM_026850, intron 1 of 5)	830.0	NM_026850	68833.0	Mm.28121	NM_026850	ENSMUSG00000026078	Pdcl3	1110061A19Rik|C80025|Viaf1	phosducin-like 3	protein-coding	0.561088019730651	0.424090804477552	1.1680994986086	0.406395660589689	1.04680982008326	0.426313164619212	0.416356578259858	1.39436954649675	0.986504275726745	0.579959556835828	1
Merged-chr14-27351671-4	chr14	27351560	27351760	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289687, intron 1 of 9)	intron (NM_001289687, intron 1 of 9)	-9729.0	NM_001289688	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	5.33041854433128	5.12281488493243	4.79389687280119	4.52209326119365	5.29562395850499	5.77047177374256	5.41808224687102	5.78748870820194	0.695509418233462	0.0236372284306156	0.201039319501791
Merged-chr5-64383019-2	chr5	64382919	64383119	+	739.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	84923.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-15860186-3	chr6	15860102	15860302	+	875.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	139541.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-144918674-1	chr7	144918574	144918774	+	1000.0	f1_c57bl6.idr	intron (NM_001347537, intron 3 of 3)	intron (NM_001347537, intron 3 of 3)	3574.0	NM_001347537	72284.0	Mm.273049	NM_028184	ENSMUSG00000031072	Oraov1	2210010N10Rik|TAOS1	oral cancer overexpressed 1	protein-coding	1.01686075447103	0.596452598067024	0.224713015389305	0.21939555610871	0.494233293736879	0.747651108699172	0.226230185411478	0.220325680754295	-0.750004877661878	0.700127168515342	1
Merged-chr11-22512650-4	chr11	22512493	22512693	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153596, intron 1 of 3)	CpG	310.0	NM_153596	103765.0	Mm.221274	NM_153596	ENSMUSG00000049904	Tmem17	AI503894|AW049890	transmembrane protein 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-16574639-2	chr15	16574539	16574739	+	820.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-203462.0	NM_009869	12565.0	Mm.439758	NM_009869	ENSMUSG00000025370	Cdh9	-	cadherin 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-32830262-4	chr17	32830120	32830320	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001293229)	promoter-TSS (NM_001293229)	41.0	NM_001293229	240064.0	Mm.476307	NM_177359	ENSMUSG00000095253	Zfp799	6030490I01Rik	zinc finger protein 799	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-137950019-1	chr3	137949919	137950119	+	573.0	f0_balb.idr	intron (NM_011932, intron 3 of 8)	RSINE1|SINE|B4	31464.0	NM_019920	56692.0	Mm.331392	NM_019920	ENSMUSG00000091512	Lamtor3	AW556229|Map2k1ip1|Mapbp|Mapksp1|Mp1	late endosomal/lysosomal adaptor, MAPK and MTOR activator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-110643949-2	chr9	110643849	110644049	+	891.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_183276, intron 5 of 53)	intron (NM_183276, intron 5 of 53)	-7834.0	NR_106186	102466885.0		NR_106186	ENSMUSG00000099275	Mir8107	Gm27455|mmu-mir-8107	microRNA 8107	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-123337803-2	chr7	123337703	123337903	+	758.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001316713, intron 1 of 19)	intron (NM_001316713, intron 1 of 19)	32112.0	NM_001122643	70497.0	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-106011444-4	chr8	106011362	106011562	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025518)	promoter-TSS (NM_025518)	-16.0	NM_025518	66369.0	Mm.287500	NM_025518	ENSMUSG00000031901	Dus2	2310016K04Rik|Dus2l	dihydrouridine synthase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-25601480-4	chr8	25601376	25601576	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001308482)	promoter-TSS (NM_001308482)	-125.0	NM_001308481	234135.0	Mm.217337	NM_001001735	ENSMUSG00000054823	Nsd3	6720429E03|A530023P05|AI528490|WHISTLE|Whsc1l1	nuclear receptor binding SET domain protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-83067671-4	chr13	83067575	83067775	+	946.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-369342.0	NR_039537	100628621.0		NR_039537	ENSMUSG00000106655	Mir3961	mmu-mir-3961	microRNA 3961	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117541423-2	chr8	117541323	117541523	+	895.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_172285, intron 2 of 32)	Lx8|LINE|L1	43148.0	NM_172285	234779.0	Mm.192699	NM_172285	ENSMUSG00000034330	Plcg2	PLC-gamma-2|PLCgamma2|Plcg-2	phospholipase C, gamma 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140567087-2	chr5	140566987	140567187	+	753.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2020.0	NM_030022	77998.0	Mm.160040	NM_030022	ENSMUSG00000036586	Grifin	E130101O17Rik	galectin-related inter-fiber protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118506213-4	chr9	118506112	118506312	+	975.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018748)	promoter-TSS (NM_018748)	-106.0	NM_018748	54214.0	Mm.10409	NM_018748	ENSMUSG00000038708	Golga4	AI225887|AU019508|Olp-1	golgi autoantigen, golgin subfamily a, 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-113993902-4	chr5	113993821	113994021	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198109)	promoter-TSS (NM_198109)	-164.0	NM_198109	231637.0	Mm.389682	NM_198109	ENSMUSG00000042121	Ssh1	AW551225|Gm1394|Gm1395|SSH-1|SSH-1L	slingshot protein phosphatase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-108768525-2	chr6	108768470	108768670	+	714.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR11A2|LTR|ERVK	-14489.0	NM_026011	67166.0	Mm.271178	NM_026011	ENSMUSG00000030105	Arl8b	2610313E07Rik|3100002J04Rik|Arl10c|gie1	ADP-ribosylation factor-like 8B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-94373285-4	chr8	94373190	94373390	+	998.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR33|LTR|ERVK	-13139.0	NM_001357205	64209.0	Mm.29151	NM_022331	ENSMUSG00000031770	Herpud1	Herp|Mifl|SUP	homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-90965726-8	chr8	90965592	90965792	+	954.3035890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177224, intron 4 of 39)	L1MC4a|LINE|L1	33443.0	NM_001310530	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	-2.05752322593321	-2.15521190974092	-2.16307242109104	-2.16952927915413	-2.17938029103484	-2.15350850414045	-2.16129297361887	-2.16837350464794	-0.683654500252594	0.846597994014493	1
Merged-chr16-11007620-2	chr16	11007520	11007720	+	839.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1278.0	NR_040518	100043147.0	Mm.489001	NR_040518	ENSMUSG00000097056	Gm4262	-	predicted gene 4262	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35920262-2	chr17	35920162	35920362	+	901.388916	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357740, intron 1 of 18)	intron (NM_001357740, intron 1 of 18)	990.0	NM_001357740	52040.0	Mm.29385	NM_175934	ENSMUSG00000039220	Ppp1r10	2610025H06Rik|Cat53|D17Ertd808e|Fb19|Pnuts	protein phosphatase 1, regulatory subunit 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-16599526-2	chr19	16599426	16599626	+	733.200012	f1_balb.idr|f1_c57bl6.idr	intron (NM_008137, intron 3 of 6)	intron (NM_008137, intron 3 of 6)	163859.0	NM_008137	14675.0	Mm.313181	NM_008137	ENSMUSG00000024697	Gna14	AU023208	guanine nucleotide binding protein, alpha 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-33661284-3	chr8	33661207	33661407	+	823.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010344, intron 1 of 12)	RLTR21|LTR|ERVK	8069.0	NM_010344	14782.0	Mm.283573	NM_010344	ENSMUSG00000031584	Gsr	AI325518|D8Ertd238e|Gr-1|Gr1	glutathione reductase	protein-coding	3.25531254187319	2.29989611706653	2.70490256564382	3.15615997246093	1.73557429484168	1.42611621087403	2.50777937207565	2.00767457609331	-1.98064830261407	0.0200306877611155	0.179707022750148
Merged-chr9-65435795-4	chr9	65435710	65435910	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027134)	promoter-TSS (NM_027134)	28.0	NM_027134	69606.0	Mm.287956	NM_027134	ENSMUSG00000059183	Mtfmt	2310020P08Rik	mitochondrial methionyl-tRNA formyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-105898936-4	chr14	105898795	105898995	+	981.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2076.0	NM_011897	24064.0	Mm.89982	NM_011897	ENSMUSG00000022114	Spry2	sprouty2	sprouty RTK signaling antagonist 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133250844-4	chr4	133250696	133250896	+	806.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_016693, exon 22 of 29)	exon (NM_016693, exon 22 of 29)	9978.0	NM_016693	53608.0	Mm.36640	NM_016693	ENSMUSG00000028862	Map3k6	Ask2|MAPKKK6|MEKK6	mitogen-activated protein kinase kinase kinase 6	protein-coding	2.12632596214816	1.67867768105889	0.906746955074759	0.892338388283203	1.60042181280726	0.929015983213164	1.86176345313038	1.44169596831081	-0.0859461890279411	0.949090445342183	0.998431161219273
Merged-chr12-36053818-3	chr12	36053722	36053922	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11344.0	NM_025359	66109.0	Mm.254663	NM_025359	ENSMUSG00000020577	Tspan13	1100001I23Rik|NET-6|Tm4sf13	tetraspanin 13	protein-coding	2.78215189084027	4.48274515258606	1.85190413884034	3.55019091883889	5.18223516745038	5.51581803098079	5.49397159809752	5.86816114088385	2.53638343774644	0.00313555674773464	0.046830385716996
Merged-chr10-62234541-2	chr10	62234441	62234641	+	882.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3323.0	NM_197996	70423.0	Mm.416781	NM_197996	ENSMUSG00000037031	Tspan15	1110036D12Rik|2700063A19Rik|AW048364|Tm4sf15	tetraspanin 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-98506421-4	chr15	98506336	98506536	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8962.0	NM_001001807	258502.0	Mm.377539	NM_001001807	ENSMUSG00000054036	Olfr279	MOR122-1|Olfr234|Olfr234-ps1|Olfr279-ps1	olfactory receptor 279	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-52677339-4	chr5	52677234	52677434	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7633.0	NM_172490	211006.0	Mm.244719	NM_172490	ENSMUSG00000029173	Sepsecs	AA986712|D5Ertd135e|SLA|SecS	Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase	protein-coding	5.36065705938231	5.4156267977822	5.18592967427938	4.49402342039746	5.74940017821553	6.17336054344706	5.77195508735291	5.90339177731992	0.849852619065151	0.00290696605932873	0.0445248239742461
Merged-chr16-89855568-2	chr16	89855468	89855668	+	658.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009384, intron 11 of 27)	intron (NM_009384, intron 11 of 27)	-37216.0	NM_001145887	21844.0	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59291599-2	chr15	59291499	59291699	+	950.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15349.0	NR_045613	100416830.0	Mm.490788	NR_045613	ENSMUSG00000098528	Zfp572	4930472F24Rik	zinc finger protein 572	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-107017701-2	chr4	107017601	107017801	+	986.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_198438, intron 5 of 16)	intron (NM_198438, intron 5 of 16)	49165.0	NM_025500	56280.0	Mm.29517	NM_025500	ENSMUSG00000028622	Mrpl37	2300004O14Rik|AI132596|MRP-L2|Rpml2	mitochondrial ribosomal protein L37	protein-coding	-0.154040840931878	-0.503907098567717	-0.507411373247013	-0.352007959678487	-0.513900283849407	-0.503115371439125	0.0528023245847064	-0.509635812565276	0.337189354339998	0.897924792148733	1
Merged-chr1-186706515-3	chr1	186706367	186706567	+	827.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001329107)	promoter-TSS (NM_001329107)	-478.0	NM_001329107	21808.0	Mm.18213	NM_009367	ENSMUSG00000039239	Tgfb2	BB105277|Tgf-beta2|Tgfb-2	transforming growth factor, beta 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-92648149-8	chr1	92648038	92648238	+	948.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153114, intron 1 of 4)	intron (NM_153114, intron 1 of 4)	703.0	NM_153114	260301.0	Mm.219545	NM_153114	ENSMUSG00000044055	Otos	OTOSP	otospiralin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-130533505-4	chr7	130533384	130533584	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162855, intron 10 of 10)	intron (NM_001162855, intron 10 of 10)	-13115.0	NM_001271343	11907.0	Mm.216321	NM_013799	ENSMUSG00000030850	Ate1	AI225793|AW547406	arginyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-139290650-2	chr4	139290566	139290766	+	891.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037761, intron 9 of 9)	intron (NM_001037761, intron 9 of 9)	20042.0	NR_151463	212555.0	Mm.45131	NM_145384	ENSMUSG00000028744	Pqlc2	BC019216	PQ loop repeat containing 2	protein-coding	-0.543768575223105	-0.693744414736583	-0.698095017716525	-0.70147233244481	-0.706276294968288	-0.69276785588218	-0.69713287392701	0.267898125800107	2.70118094993123	0.331865762501515	1
Merged-chr14-64870265-2	chr14	64870165	64870365	+	886.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177338, intron 4 of 9)	Lx5c|LINE|L1	79592.0	NM_177338	219150.0	Mm.344074	NM_177338	ENSMUSG00000021972	Hmbox1	AI451877|AI604847|F830020C16Rik	homeobox containing 1	protein-coding	-0.0980155869687769	-0.220151832815803	-0.224262647514466	0.27806958698958	-0.094170766823903	-0.219222860961358	-0.223357429235034	0.284686267235527	0.0311183153145615	0.989119696665418	1
Merged-chr9-37545051-3	chr9	37544951	37545151	+	622.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_020518)	TTS (NM_020518)	5796.0	NM_020518	57276.0	Mm.27478	NM_020518	ENSMUSG00000001943	Vsig2	1190004B15Rik|2210413P10Rik|AU040484|CTX|Ctm	V-set and immunoglobulin domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-56118875-2	chr4	56118775	56118975	+	917.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR78|LTR|ERV1	-586400.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-98694249-4	chr7	98694090	98694290	+	800.595825	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_144495, exon 1 of 1)	non-coding (NR_144495, exon 1 of 1)	8738.0	NR_144495	100040769.0	Mm.126401	NR_144495		Gm15506	-	predicted gene 15506	ncRNA	2.63483284026914	2.70398712810869	2.85166536936368	2.77350401334927	3.13881943817605	2.85274432209139	2.87338072559857	3.28849840623439	0.590933453596996	0.362571169062994	0.858187939866503
Merged-chr19-53318527-3	chr19	53318419	53318619	+	688.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360348, intron 1 of 5)	MIR3|SINE|MIR	7074.0	NM_001360348	17859.0	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-54401895-2	chr12	54401795	54401995	+	605.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10577.0	NR_033689	665239.0	Mm.26856	NR_033689		Gm7550	EG665239|Gm666	predicted gene 7550	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-63372080-1	chr10	63371980	63372180	+	590.0	f1_c57bl6.idr	Intergenic	B3|SINE|B2	-10363.0	NM_001253685	30045.0	Mm.32550	NM_013888	ENSMUSG00000036764	Dnajc12	Jdp1|mJDP1	DnaJ heat shock protein family (Hsp40) member C12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133162654-2	chr4	133162554	133162754	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153423, intron 1 of 8)	intron (NM_153423, intron 1 of 8)	32021.0	NM_153423	242687.0	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	-1.3681463318974	-1.33624156493372	-1.34650167276047	-0.80669348975676	-1.36769697821496	-1.33401815676661	-1.34417900924365	-1.3534210303531	-2.3580830592467	0.49586638340111	1
Merged-chr15-98692391-8	chr15	98692304	98692504	+	843.34375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14943.0	NM_172612	223881.0	Mm.274010	NM_172612	ENSMUSG00000054855	Rnd1	A830014L09Rik|Arhs	Rho family GTPase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-56506549-4	chr9	56506435	56506635	+	849.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	87916.0	NM_025812	66867.0	Mm.150856	NM_025812	ENSMUSG00000032329	Hmg20a	1200004E06Rik|5730490E10Rik|Hmgxb1|Ibraf	high mobility group 20A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-36935405-1	chr16	36935305	36935505	+	1000.0	f0_balb.idr	intron (NM_008225, intron 1 of 13)	intron (NM_008225, intron 1 of 13)	422.0	NM_008225	15163.0	Mm.4091	NM_008225	ENSMUSG00000022831	Hcls1	AW213261|HS1	hematopoietic cell specific Lyn substrate 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-34653599-4	chr13	34653509	34653709	+	958.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025831)	promoter-TSS (NM_025831)	686.0	NR_105041	101056149.0	Mm.421309	NR_105041	ENSMUSG00000086786	Gm15908	-	predicted gene 15908	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-45253874-2	chr9	45253774	45253974	+	614.400024	f1_balb.idr|f1_c57bl6.idr	TTS (NM_008348)	TTS (NM_008348)	12833.0	NR_106054	102466803.0		NR_106054	ENSMUSG00000098361	Mir7086	Gm27643|mmu-mir-7086	microRNA 7086	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84995403-1	chr8	84995303	84995503	+	552.0	f1_c57bl6.idr	intron (NM_133255, intron 10 of 21)	intron (NM_133255, intron 10 of 21)	4808.0	NM_001167991	170833.0	Mm.247775	NM_133255	ENSMUSG00000052566	Hook2	A630054I03Rik	hook microtubule tethering protein 2	protein-coding	-1.02984829257602	-1.26598729172987	-1.27598232616595	-0.988925435152524	-1.29328978397535	-1.26382132607229	-1.27371966945454	-1.28272291979146	-2.24097144207091	0.505905030189596	1
Merged-chr5-65724594-4	chr5	65724563	65724763	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVL-B4-int|LTR|ERVL	-26807.0	NM_001081321	71521.0	Mm.278974	NM_027818	ENSMUSG00000029202	Pds5a	9030416H16Rik|E230024D05Rik|mKIAA0648	PDS5 cohesin associated factor A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-180696888-2	chr2	180696788	180696988	+	755.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291432, intron 1 of 5)	intron (NM_001291432, intron 1 of 5)	-4840.0	NR_111965	23856.0	Mm.253836	NM_011805	ENSMUSG00000038914	Dido1	6720461J16Rik|D130048F08Rik|DATF-1|DIO-1|Datf1|dido	death inducer-obliterator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-84697777-2	chr18	84697677	84697877	+	710.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-12075.0	NM_023149	66054.0	Mm.29646	NM_023149	ENSMUSG00000024644	Cndp2	0610010E05Rik|C76600|Cn2|Dip-2|Pep-1|Pep1	CNDP dipeptidase 2 (metallopeptidase M20 family)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-133758027-3	chr3	133757930	133758130	+	949.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-213640.0	NM_001346736	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26463726-3	chr17	26463632	26463832	+	804.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	44740.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-84742430-1	chr6	84742330	84742530	+	562.0	f0_balb.idr	intron (NM_177077, intron 20 of 21)	MLT1H|LTR|ERVL-MaLR	-148522.0	NM_001177713	232174.0	Mm.255246	NM_175475	ENSMUSG00000063415	Cyp26b1	CP26|P450RAI-2	cytochrome P450, family 26, subfamily b, polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-34531842-4	chr5	34531745	34531945	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011893, intron 1 of 12)	intron (NM_011893, intron 1 of 12)	6061.0	NM_011893	24055.0	Mm.5012	NM_011893	ENSMUSG00000054520	Sh3bp2	3BP2	SH3-domain binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-83108754-1	chr8	83108654	83108854	+	567.0	f0_balb.idr	Intergenic	MTC|LTR|ERVL-MaLR	-56598.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	1.06200679012651	0.533280846228945	0.521523495292124	0.71102732368561	1.17665317018471	0.768813664299423	0.524134310300556	1.74884576119167	1.89009162389183	0.238389113236688	0.734898554874698
Merged-chr13-48967251-8	chr13	48967147	48967347	+	958.2708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015601)	promoter-TSS (NR_015601)	581.0	NM_001033268	218236.0	Mm.426571	NM_001033268	ENSMUSG00000038014	Fam120a	C9orf10|Ossa	family with sequence similarity 120, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-119156693-5	chr9	119156615	119156815	+	853.5618900000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146230, intron 1 of 11)	CpG-15481	378.0	NM_146230	235674.0	Mm.379402	NM_146230	ENSMUSG00000010651	Acaa1b	-	acetyl-Coenzyme A acyltransferase 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-11298058-2	chr16	11297958	11298158	+	593.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15751.0	NM_011608	21935.0	Mm.12935	NM_011608	ENSMUSG00000022496	Tnfrsf17	BCM|BCMA|Tnfrsf13|Tnfrsf13a	tumor necrosis factor receptor superfamily, member 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-7130897-3	chr7	7130788	7130988	+	923.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_029584, exon 4 of 4)	3' UTR (NM_029584, exon 4 of 4)	5867.0	NM_029584	76373.0	Mm.159732	NM_029584	ENSMUSG00000063535	Zfp773	2810409K11Rik	zinc finger protein 773	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-92675891-3	chr7	92675767	92675967	+	829.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Charlie1b|DNA|hAT-Charlie	-5955.0	NM_029078	74737.0	Mm.288645	NM_029078	ENSMUSG00000041328	Pcf11	2500001H09Rik|5730417B17Rik|C77803	PCF11 cleavage and polyadenylation factor subunit	protein-coding	1.36327156932384	2.60904765267073	3.37614734108847	2.56923801238446	2.84650610953043	2.29723176945849	3.80243867748266	2.80708408038882	0.700814804809401	0.395439224314132	0.882967707193726
Merged-chr5-80931574-2	chr5	80931474	80931674	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-88997.0	NM_001347367	319387.0	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-61365647-6	chr3	61365506	61365706	+	999.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_028712, exon 1 of 1)	exon (NM_028712, exon 1 of 1)	1099.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-48192979-1	chr17	48192879	48193079	+	571.0	f0_balb.idr	Intergenic	Intergenic	-25722.0	NM_178796	328830.0	Mm.470939	NM_178796	ENSMUSG00000043939	A530064D06Rik	Trem4|pdctrem	RIKEN cDNA A530064D06 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-55557348-4	chr15	55557263	55557463	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134092)	promoter-TSS (NM_134092)	-45.0	NM_134092	105837.0	Mm.390829	NM_134092	ENSMUSG00000022369	Mtbp	AI429604|MDM2BP	Mdm2, transformed 3T3 cell double minute p53 binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-56440595-4	chr12	56440469	56440669	+	958.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	88851.0	NR_045082	104798.0	Mm.310950	NR_045082	ENSMUSG00000112343	Sfta3-ps	AI413669|E030019B13Rik|Nanci	surfactant associated 3, pseudogene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141949568-1	chr4	141949468	141949668	+	541.0	f1_c57bl6.idr	intron (NM_177868, intron 13 of 31)	intron (NM_177868, intron 13 of 31)	-33424.0	NR_040672	545691.0	Mm.332015	NR_040672	ENSMUSG00000085424	Fhad1os1	Gm13037	forkhead-associated (FHA) phosphopeptide binding domain 1, opposite strand 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-148644091-5	chr4	148644047	148644247	+	904.0300289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085505, intron 1 of 10)	intron (NM_001085505, intron 1 of 10)	830.0	NM_001085505	230909.0	Mm.332067	NM_001085505	ENSMUSG00000070577	Gm572	b2b1167Clo	predicted gene 572	protein-coding	0.37173604126846	-0.0860052760790646	-0.0911471231742109	-0.0951153275734365	-0.100725135351256	0.276820487705209	0.592022589595455	-0.0944220085566102	1.24255253806499	0.592011940779509	1
Merged-chr11-54758777-2	chr11	54758677	54758877	+	888.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178626, intron 1 of 5)	B4A|SINE|B4	28926.0	NM_178626	72729.0	Mm.29476	NM_178626	ENSMUSG00000052298	Cdc42se2	2810404F18Rik|AA408783|AA536669|SPEC2	CDC42 small effector 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-61565058-1	chr12	61564958	61565158	+	738.0	f1_c57bl6.idr	intron (NM_001310586, intron 1 of 5)	intron (NM_001310586, intron 1 of 5)	41891.0	NM_001310586	238205.0	Mm.28802	NM_178714	ENSMUSG00000035653	Lrfn5	AI427653|AI604817|C130061B21|mKIAA4208	leucine rich repeat and fibronectin type III domain containing 5	protein-coding	-1.8418762459921	-1.8125357239735	-1.82140854000656	-1.82869693527674	-1.56059678980999	-1.8106129477253	-1.81939992894326	-1.82739231600805	1.3620893379502	0.699511506488145	1
Merged-chr15-81610480-4	chr15	81610383	81610583	+	988.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177821, exon 4 of 31)	exon (NM_177821, exon 4 of 31)	24269.0	NM_177821	328572.0	Mm.258397	NM_177821	ENSMUSG00000055024	Ep300	A430090G16|A730011L11|KAT3B|p300|p300 HAT	E1A binding protein p300	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-23993089-2	chr17	23992986	23993186	+	634.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_133731)	TTS (NM_133731)	5014.0	NM_133731	70835.0	Mm.157351	NM_133731	ENSMUSG00000045027	Prss22	4733401N09Rik|BSSP-4|SP001LA	protease, serine 22	protein-coding	1.89742013971696	2.12639035092174	2.46900849319062	2.99223401693331	2.57540857655395	1.44961954794085	2.95733496140931	2.41117084968669	0.0376909085389387	0.966066118096475	0.998431161219273
Merged-chr4-149169666-2	chr4	149169566	149169766	+	678.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-2961.0	NM_001081274	110208.0	Mm.252080	NM_025801	ENSMUSG00000028961	Pgd	0610042A05Rik|AU019875|C78335	phosphogluconate dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119352268-4	chr11	119352177	119352377	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018822, intron 2 of 7)	L1MB2|LINE|L1	3233.0	NM_018822	27029.0	Mm.103788	NM_018822	ENSMUSG00000005043	Sgsh	4632406A19Rik	N-sulfoglucosamine sulfohydrolase (sulfamidase)	protein-coding	4.93786316068286	3.37831416897945	4.73359771832603	4.34880980312279	4.86437854150423	3.1268918052047	3.7038703763503	4.75025465873172	-0.213749980782499	0.677705015111944	0.994818437932722
Merged-chr6-129181834-4	chr6	129181725	129181925	+	902.2291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053109, intron 1 of 4)	intron (NM_053109, intron 1 of 4)	1210.0	NM_053109	93694.0	Mm.197536	NM_053109	ENSMUSG00000030157	Clec2d	Clr-b|Clrb|Ocil	C-type lectin domain family 2, member d	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-107037436-2	chr11	107037336	107037536	+	736.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359590, intron 27 of 27)	intron (NM_001359590, intron 27 of 27)	9213.0	NM_001163473	69066.0	Mm.40679	NM_001163473	ENSMUSG00000078607	1810010H24Rik	-	RIKEN cDNA 1810010H24 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-52576660-2	chr2	52576560	52576760	+	744.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037099, intron 2 of 13)	intron (NM_001037099, intron 2 of 13)	-18049.0	NM_001285427	12298.0	Mm.330223	NM_146123	ENSMUSG00000017412	Cacnb4	3110038O15Rik|Cchb4|lh	calcium channel, voltage-dependent, beta 4 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-49946952-4	chr16	49946844	49947044	+	911.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8886.0	NR_153658	100503490.0	Mm.72499	NR_153658		Gm19723	-	predicted gene, 19723	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-29824933-2	chr15	29824833	29825033	+	893.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-111529.0	NR_039542	100628607.0		NR_039542	ENSMUSG00000092639	Mir3964	mmu-mir-3964|mu-mir-3964	microRNA 3964	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131092449-4	chr1	131092361	131092561	+	966.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008551, intron 1 of 9)	intron (NM_008551, intron 1 of 9)	5382.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6856490-2	chr19	6856390	6856590	+	721.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081291, intron 6 of 26)	intron (NM_001081291, intron 6 of 26)	1721.0	NM_001081291	78317.0	Mm.329596	NM_198008	ENSMUSG00000047810	Ccdc88b	2610041P08Rik|Ccdc88	coiled-coil domain containing 88B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-128362780-4	chr6	128362646	128362846	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001326586)	promoter-TSS (NM_001326586)	76.0	NM_001326586	72440.0	Mm.143908	NM_197981	ENSMUSG00000048668	Rhno1	2510047L19Rik|5930416I19Rik	RAD9-HUS1-RAD1 interacting nuclear orphan 1	protein-coding	5.70941239396396	4.92998199790886	5.50031151358361	4.54544465415856	5.81809061083169	5.63870276894428	6.04823066194712	5.7371561260289	0.640953558771622	0.0347309066455055	0.263401654824763
Merged-chr19-38929859-3	chr19	38929723	38929923	+	831.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-1167.0	NM_008234	15201.0	Mm.57223	NM_008234	ENSMUSG00000025001	Hells	AI323785|E130115I21Rik|LSH|Lysh|PASG|YFK8	helicase, lymphoid specific	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141950901-2	chr4	141950801	141951001	+	917.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177868, intron 13 of 31)	MT2B|LTR|ERVL	-32091.0	NR_040672	545691.0	Mm.332015	NR_040672	ENSMUSG00000085424	Fhad1os1	Gm13037	forkhead-associated (FHA) phosphopeptide binding domain 1, opposite strand 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-33798755-1	chr15	33798655	33798855	+	572.0	f1_c57bl6.idr	Intergenic	L1VL1|LINE|L1	-110872.0	NM_001085421	239364.0	Mm.60794	NM_001085421	ENSMUSG00000038984	Tspyl5	6330530B20|E130308C19Rik	testis-specific protein, Y-encoded-like 5	protein-coding	0.552670908208381	0.650352806156161	0.735574099495708	0.883470578688807	0.558885426505987	0.333886005538567	0.32874302356625	0.324396838332637	-2.64173397086001	0.155441020423506	1
Merged-chr15-73596663-4	chr15	73596553	73596753	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001168255)	promoter-TSS (NM_001168255)	-127.0	NM_001168255	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-19019010-4	chr11	19018914	19019114	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001193271)	promoter-TSS (NM_001193271)	-45.0	NM_010789	17268.0	Mm.356578	NM_010789	ENSMUSG00000020160	Meis1	C530044H18Rik|Evi8	Meis homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-14045178-3	chr10	14045015	14045215	+	724.81665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358783, intron 2 of 12)	intron (NM_001358783, intron 2 of 12)	78736.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	0.354311297784272	0.226009904178858	0.219127425208139	0.5291489492712	0.358875256458277	0.980604320262327	0.817269132712248	0.21473095042837	2.0025402431489	0.283423286039058	1
Merged-chr5-121844716-2	chr5	121844616	121844816	+	852.8333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-4281.0	NM_175474	231717.0	Mm.12654	NM_175474	ENSMUSG00000044134	Fam109a	A230106M15Rik|AU017694|IPIP27A|Ses1	family with sequence similarity 109, member A	protein-coding	2.03949638674936	1.99987771582613	2.50828845178429	2.02370714915921	1.8148600891204	2.01356051528888	2.52759985726106	2.03348555420223	-0.0902621689410451	0.918896538624259	0.998431161219273
Merged-chr16-32171155-4	chr16	32171046	32171246	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5552.0	NM_001347181	224109.0	Mm.33498	NM_146069	ENSMUSG00000052384	Nrros	E430025L02Rik|Lrcc33|Lrrc33	negative regulator of reactive oxygen species	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-115534797-3	chr6	115534662	115534862	+	919.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9942.0	NM_199033	381802.0	Mm.291208	NM_199033	ENSMUSG00000042389	Tsen2	AU067695	tRNA splicing endonuclease subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-72580417-2	chr9	72580317	72580517	+	768.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033536, intron 2 of 8)	intron (NM_001033536, intron 2 of 8)	48177.0	NM_001033536	319758.0	Mm.32081	NM_001033536	ENSMUSG00000037674	Rfx7	2510005N23Rik|9930116O05Rik|D130086K05Rik|Rfxdc2	regulatory factor X, 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117353325-4	chr11	117353220	117353420	+	928.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017380, intron 5 of 9)	intron (NM_017380, intron 5 of 9)	21007.0	NM_001113488	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-156067740-4	chr4	156067642	156067842	+	984.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7940.0	NR_132444	100415901.0	Mm.437006	NR_132444	ENSMUSG00000086549	Gm13648	-	predicted gene 13648	ncRNA	1.02740577591727	0.748354487860075	0.235171205870656	0.229811106433443	0.720102945377892	0.243651800833269	0.236700488454704	0.403475271968285	-1.18357626839955	0.543670547791231	1
Merged-chr5-34369023-1	chr5	34368923	34369123	+	603.0	f1_c57bl6.idr	promoter-TSS (NM_001243123)	promoter-TSS (NM_001243123)	-910.0	NM_001243123	231128.0	Mm.286885	NM_001030306	ENSMUSG00000037210	Fam193a	-	family with sequence similarity 193, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-41506406-2	chr4	41506301	41506501	+	704.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253788, intron 4 of 5)	intron (NM_001253788, intron 4 of 5)	1363.0	NM_028624	73721.0	Mm.45614	NM_028624	ENSMUSG00000028441	1110017D15Rik	Cbe1|Smrp1	RIKEN cDNA 1110017D15 gene	protein-coding	1.07173262965992	0.594464081476711	1.18765282810563	1.14498953375891	0.567149460025581	0.805428261319616	0.587077734356094	1.34647475230701	-0.674832815178729	0.674496062927681	0.99440487726309
Merged-chr6-55415524-3	chr6	55415469	55415669	+	722.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	18682.0	NR_046179	330324.0	Mm.113703	NR_046179	ENSMUSG00000108228	6430584L05Rik	6430584L05	RIKEN cDNA 6430584L05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-41375374-3	chr3	41375277	41375477	+	973.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	117822.0	NR_040385	78706.0	Mm.366094	NR_040385	ENSMUSG00000097639	Platr4	C430002E04Rik	pluripotency associated transcript 4	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-124055365-2	chr1	124055265	124055465	+	859.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9806.0	NM_199021	269109.0	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-21188612-4	chr5	21188497	21188697	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153365, intron 1 of 26)	intron (NR_153365, intron 1 of 26)	2330.0	NM_001359877	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-46130404-2	chr4	46130304	46130504	+	802.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355375, intron 3 of 9)	B3|SINE|B2	8071.0	NM_173033	272027.0	Mm.249594	NM_173033	ENSMUSG00000035495	Tstd2	3010020C06	thiosulfate sulfurtransferase (rhodanese)-like domain containing 2	protein-coding	0.855541141456239	0.475438258216103	0.466418774768873	1.22705805542608	0.970564173962677	0.477461220838391	0.468414558269625	1.23615677215749	0.168439679618009	0.923919206615479	1
Merged-chr10-7726690-2	chr10	7726590	7726790	+	937.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011835, intron 1 of 10)	intron (NM_011835, intron 1 of 10)	690.0	NM_011835	23924.0	Mm.28127	NM_011835	ENSMUSG00000019794	Katna1	-	katanin p60 (ATPase-containing) subunit A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-37697533-2	chr19	37697433	37697633	+	789.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007811)	promoter-TSS (NM_007811)	-275.0	NM_007811	13082.0	Mm.42230	NM_007811	ENSMUSG00000024987	Cyp26a1	Cyp26|P450RA|P450RAI|RAH	cytochrome P450, family 26, subfamily a, polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126106696-2	chr7	126106596	126106796	+	577.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028816, intron 21 of 23)	intron (NM_028816, intron 21 of 23)	-24285.0	NM_001358885	269994.0	Mm.39599	NM_001101488	ENSMUSG00000046182	Gsg1l	AI852434|C230098I05Rik|G630023A01Rik|Gm637|g1l	GSG1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-29535645-2	chr10	29535545	29535745	+	561.5	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_028351, exon 1 of 5)	5' UTR (NM_028351, exon 1 of 5)	222.0	NM_028351	72780.0	Mm.45191	NM_028351	ENSMUSG00000019880	Rspo3	2810459H04Rik|AW742308|Cristin1|Thsd2	R-spondin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-20159468-1	chr13	20159368	20159568	+	629.0	f1_balb.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	68961.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	-0.402713001207468	-0.206504756756129	-0.395138561675075	0.111924782141216	0.0574165709433222	-0.390585501400863	-0.394320751037754	-0.397495423236787	-0.566517515705849	0.825249880195915	1
Merged-chr10-88621533-4	chr10	88621433	88621633	+	854.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16381.0	NM_175418	109272.0	Mm.147208	NM_175418	ENSMUSG00000020061	Mybpc1	8030451F13Rik	myosin binding protein C, slow-type	protein-coding	-0.294083384950798	-0.277963382818132	0.430175288204581	-0.287290034214969	-0.293070061983337	-0.276782190008417	0.44311158986884	-0.286577643912737	0.0410571026119648	0.987250810110592	1
Merged-chr14-25614125-4	chr14	25613978	25614178	+	845.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 6 of 23)	PB1D7|SINE|Alu	10565.0	NM_001309430	100188919.0	Mm.473810	NM_001309430		Gm45915	Israa	predicted gene, 45915	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-34187767-4	chr13	34187653	34187853	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033167, intron 10 of 10)	intron (NM_001033167, intron 10 of 10)	24789.0	NM_001110515	69666.0	Mm.24788	NM_001101430	ENSMUSG00000071451	Psmg4	PAC-4|mPAC4	proteasome (prosome, macropain) assembly chaperone 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-57526372-2	chr9	57526272	57526472	+	652.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007747, intron 1 of 4)	intron (NM_007747, intron 1 of 4)	5140.0	NM_007747	12858.0	Mm.273403	NM_007747	ENSMUSG00000000088	Cox5a	AA959768|CcOX	cytochrome c oxidase subunit Va	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134863369-4	chr6	134863270	134863470	+	997.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24415.0	NR_074084	14760.0	Mm.4787	NM_008157	ENSMUSG00000032641	Gpr19	-	G protein-coupled receptor 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-87127125-4	chr11	87127033	87127233	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_197987)	promoter-TSS (NM_197987)	58.0	NM_197987	68729.0	Mm.17436	NM_197987	ENSMUSG00000018548	Trim37	1110032A10Rik|2810004E07Rik|AI848587|AU043018|MUL|TEF3|mKIAA0898	tripartite motif-containing 37	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-22297435-3	chr10	22297343	22297543	+	953.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009018, intron 6 of 6)	intron (NM_009018, intron 6 of 6)	-9277.0	NR_015465	606736.0	Mm.387042	NR_015465	ENSMUSG00000097352	C920009B18Rik	-	RIKEN cDNA C920009B18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-46467767-3	chr18	46467666	46467866	+	814.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1950.0	NR_045438	72076.0	Mm.82766	NM_028086		Mospd4	2010013H21Rik	motile sperm domain containing 4	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95588827-4	chr3	95588725	95588925	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177669)	promoter-TSS (NM_001177669)	-109.0	NM_146133	229593.0	Mm.245830	NM_146133	ENSMUSG00000046519	Golph3l	2010204I15Rik|AU015439|AW549227|C77637|Gpp34r	golgi phosphoprotein 3-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-122295654-2	chr9	122295554	122295754	+	869.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1231.0	NM_133979	102566.0	Mm.87676	NM_133979	ENSMUSG00000037949	Ano10	AI604832|Tmem16k	anoctamin 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-55350554-3	chr4	55350451	55350651	+	971.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009011, intron 1 of 9)	CpG	509.0	NM_009011	19359.0	Mm.196846	NM_009011	ENSMUSG00000028426	Rad23b	0610007D13Rik|AV001138|HR23B|mHR23B|p58	RAD23 homolog B, nucleotide excision repair protein	protein-coding	4.7509656171726	4.56937245742907	4.47753280410968	4.20610476622303	3.79406321571244	4.17673030133911	3.53058950980544	4.79457430652015	-0.457560353637226	0.292261348615129	0.796581476757
Merged-chr1-53782518-4	chr1	53782403	53782603	+	917.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133810, intron 1 of 7)	intron (NM_133810, intron 1 of 7)	2712.0	NM_133810	98267.0	Mm.25559	NM_133810	ENSMUSG00000026094	Stk17b	3110009A03Rik|AI120141|Drak2	serine/threonine kinase 17b (apoptosis-inducing)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33832102-3	chr16	33832005	33832205	+	934.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 1 of 14)	intron (NM_001145884, intron 1 of 14)	2440.0	NM_001145884	16419.0	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-80223960-2	chr17	80223860	80224060	+	870.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355458)	promoter-TSS (NM_001355458)	-491.0	NM_026053	67242.0	Mm.279985	NM_026053	ENSMUSG00000055760	Gemin6	2610019B15Rik|2810470M17Rik	gem nuclear organelle associated protein 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-93310316-4	chr10	93310206	93310406	+	820.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001322265, intron 1 of 4)	CpG	853.0	NM_001322268	13713.0	Mm.4454	NM_013508	ENSMUSG00000008398	Elk3	D430049E23Rik|Erp|Etrp|Net|Sap-2	ELK3, member of ETS oncogene family	protein-coding	2.46840006561195	1.00504876839797	0.981197823241289	0.962150053972111	2.02233099748236	1.49570692492219	2.214396032633	1.70519941238348	0.809559313005613	0.525750072952225	0.948468731247113
Merged-chr7-142395624-2	chr7	142395524	142395724	+	686.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7754.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120709366-4	chr8	120709244	120709444	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27014.0	NM_008320	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	2.12159816225343	3.60210803555109	3.95704253869186	3.10007939931794	1.43235453883343	3.93126555927953	4.70390333263138	3.0105547849097	0.554092044808417	0.646077976988467	0.984116759910594
Merged-chr11-73160308-4	chr11	73160204	73160404	+	973.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033321)	promoter-TSS (NM_033321)	-226.0	NM_033321	94045.0	Mm.156893	NM_033321	ENSMUSG00000005950	P2rx5	P2X5	purinergic receptor P2X, ligand-gated ion channel, 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4584110-2	chr16	4584010	4584210	+	887.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-10603.0	NM_031184	83396.0	Mm.134072	NM_031184	ENSMUSG00000014303	Glis2	Gli5|Klf16|Nkl	GLIS family zinc finger 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-41552096-4	chr13	41552021	41552221	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54095.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-48048738-6	chr6	48048701	48048901	+	893.9722289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081382)	promoter-TSS (NM_001081382)	-687.0	NM_001081382	72306.0	Mm.381553	NM_001081382	ENSMUSG00000071477	Zfp777	2500002G23Rik	zinc finger protein 777	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3228453-2	chr4	3228353	3228553	+	892.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43148.0	NM_001167535	100312471.0	Mm.377218	NM_001167535	ENSMUSG00000115466	Vmn1r3	Gm11778	vomeronasal 1 receptor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-23621713-4	chr13	23621616	23621816	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178194)	promoter-TSS (NM_178194)	-592.0	NM_178194	319179.0	Mm.440391	NM_178194	ENSMUSG00000047246	Hist1h2be	-	histone cluster 1, H2be	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6341131-4	chr19	6341057	6341257	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291787)	promoter-TSS (NM_001291787)	-3.0	NM_009006	26412.0	Mm.25860	NM_009006	ENSMUSG00000024948	Map4k2	AI385662|BL44|GCK|Rab8ip	mitogen-activated protein kinase kinase kinase kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-84585110-3	chr16	84584901	84585101	+	908.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-94788.0	NR_040537	78023.0	Mm.243853	NR_040537		4930529L06Rik	-	RIKEN cDNA 4930529L06 gene	ncRNA	2.06716299580297	3.07560187230706	2.3700731000323	1.52633659175957	1.81810832807951	2.69255230660164	2.38936271786279	1.53332488468431	-0.444880158483151	0.634693694056824	0.982417279970648
Merged-chr12-71136566-4	chr12	71136486	71136686	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029818)	promoter-TSS (NM_029818)	89.0	NM_001024853	30056.0	Mm.207767	NM_013896	ENSMUSG00000021079	Timm9	2810011L15Rik|Tim10a|Timm10	translocase of inner mitochondrial membrane 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129058084-4	chr4	129057985	129058185	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029219)	promoter-TSS (NM_029219)	-186.0	NM_029219	75234.0	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-88647211-4	chr8	88647080	88647280	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145857)	promoter-TSS (NM_145857)	-167.0	NM_145857	257632.0	Mm.222633	NM_145857	ENSMUSG00000055994	Nod2	ACUG|BLAU|CD|Card15|F830032C23Rik|IBD1|Nlrc2	nucleotide-binding oligomerization domain containing 2	protein-coding	3.80563415641018	2.22718860361536	4.43999199358922	3.88207317743524	4.10244509629544	4.94552464694344	4.56299038584037	3.60538714221398	0.785865784521732	0.15363233920953	0.608506494422839
Merged-chr12-55372676-2	chr12	55372576	55372776	+	590.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025373, intron 4 of 6)	intron (NM_025373, intron 4 of 6)	-11546.0	NM_001310583	26443.0	Mm.30210	NM_011968	ENSMUSG00000021024	Psma6	IOTA	proteasome (prosome, macropain) subunit, alpha type 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-53463244-4	chr3	53463151	53463351	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172501)	promoter-TSS (NM_172501)	7.0	NM_172501	212114.0	Mm.85744	NM_172501	ENSMUSG00000042997	Nhlrc3	4833441N19|8030451K01Rik|mKIAA4083	NHL repeat containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-61017693-4	chr19	61017611	61017811	+	911.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018869, intron 2 of 15)	intron (NM_018869, intron 2 of 15)	123129.0	NR_131956	414758.0	Mm.100056	NM_001001737	ENSMUSG00000074733	Zfp950	5830428H23Rik|AU016073|BC055757|Gm34518|Zfp826|mszf84	zinc finger protein 950	protein-coding	1.68595349651207	1.79694133988059	0.591822087892196	0.580361581564825	0.919976920305779	0.609575519979352	0.595056990261907	1.26091858521725	-1.62851172045682	0.310973084178696	0.812040423094022
Merged-chr18-34651800-4	chr18	34651709	34651909	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178347)	promoter-TSS (NM_178347)	-73.0	NM_178347	52563.0	Mm.196638	NM_178347	ENSMUSG00000024370	Cdc23	6030435O18|D18Ertd243e	CDC23 cell division cycle 23	protein-coding	5.78578399618667	5.53237052126413	5.37262838932336	4.81545672797022	5.80648595407857	5.62725453688003	5.40877587700538	4.91954246036022	0.0655189302015529	0.834240763794452	0.998431161219273
Merged-chr2-5014824-4	chr2	5014717	5014917	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-2026.0	NM_027290	70024.0	Mm.23828	NM_027290	ENSMUSG00000026669	Mcm10	2410041F14Rik|AU018508|C330019M07Rik|C79164	minichromosome maintenance 10 replication initiation factor	protein-coding	3.0727868401275	4.5160832928882	3.6165157005421	4.03107555578917	3.50775796910492	4.12654370396185	3.26770695795239	3.16230062604657	-0.49230889634723	0.370672449836299	0.863727598865104
Merged-chr3-127896078-8	chr3	127895980	127896180	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027482, exon 1 of 2)	exon (NM_027482, exon 1 of 2)	243.0	NM_027482	70617.0	Mm.317049	NM_027482	ENSMUSG00000050549	Fam241a	2700063A17Rik|5730508B09Rik|C80506	family with sequence similarity 241, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-53848774-4	chr1	53848686	53848886	+	947.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_106149)	promoter-TSS (NR_106149)	-638.0	NR_106149	102465783.0		NR_106149	ENSMUSG00000098443	Mir7681	Gm27806|mmu-mir-7681	microRNA 7681	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-9697425-2	chr3	9697325	9697525	+	635.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_053182, intron 6 of 7)	intron (NM_053182, intron 6 of 7)	-87340.0	NM_133218	170753.0	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-31093578-3	chr17	31093479	31093679	+	582.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009593, intron 3 of 14)	intron (NM_009593, intron 3 of 14)	35885.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	0.264479307830455	0.652528420273991	0.279340211467758	0.44484135898099	0.857472798486812	1.04130436259067	0.28092910971361	0.448051560420059	1.79900255183683	0.324998389242224	1
Merged-chr7-99148113-2	chr7	99148013	99148213	+	676.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-6969.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-100133526-2	chr3	100133426	100133626	+	572.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028892, intron 48 of 48)	Lx6|LINE|L1	28881.0	NM_175552	269470.0	Mm.24591	NM_175552	ENSMUSG00000033285	Wdr3	AW546279|D030020G18Rik	WD repeat domain 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131050239-1	chr1	131050139	131050339	+	680.0	f0_c57.idr	Intergenic	Intergenic	30394.0	NM_010548	16153.0	Mm.874	NM_010548	ENSMUSG00000016529	Il10	CSIF|Il-10	interleukin 10	protein-coding	1.6569985863093	0.686516223526101	1.57534448902846	1.69272025338108	0.646751218922858	0.689563366338321	1.07820935891556	0.664027771191515	-3.33354949090098	0.0418305916893788	0.29270029495869
Merged-chr11-103220706-2	chr11	103220606	103220806	+	702.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_016896, exon 16 of 16)	3' UTR (NM_016896, exon 16 of 16)	-2274.0	NM_177801	328019.0	Mm.189646	NM_177801	ENSMUSG00000044787	Spata32	4933400C05Rik|VAD1.2	spermatogenesis associated 32	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3376199-4	chr19	3376132	3376332	+	887.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013495, intron 13 of 18)	Lx8|LINE|L1	-12625.0	NM_001039658	17771.0	Mm.209941	NM_010841	ENSMUSG00000024905	Tesmin	Mtl5	testis expressed metallothionein like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135931284-2	chr4	135931184	135931384	+	859.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_024243, intron 4 of 7)	intron (NM_024243, intron 4 of 7)	10558.0	NM_024243	71665.0	Mm.439940	NM_024243	ENSMUSG00000028673	Fuca1	0610006A03Rik|9530055J05Rik|Afuc|Fuca	fucosidase, alpha-L- 1, tissue	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-32506308-4	chr17	32506129	32506329	+	871.244019	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001101445)	promoter-TSS (NM_001101445)	-233.0	NM_001101445	208285.0	Mm.311422	NM_001101445	ENSMUSG00000091586	Cyp4f17	EG208285	cytochrome P450, family 4, subfamily f, polypeptide 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-140701319-4	chr4	140701243	140701443	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173867)	promoter-TSS (NM_173867)	-130.0	NM_173867	108911.0	Mm.253	NM_173867	ENSMUSG00000040945	Rcc2	2610510H01Rik|2610529N02Rik|AA536646|AA675016|Td60|mKIAA1470	regulator of chromosome condensation 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-145229968-2	chr4	145229868	145230068	+	695.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011610, intron 1 of 9)	intron (NM_011610, intron 1 of 9)	16902.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6265822-2	chr19	6265722	6265922	+	883.083374	f1_balb.idr|f1_c57bl6.idr	TTS (NR_029720)	TTS (NR_029720)	978.0	NR_029720	387187.0		NR_029720	ENSMUSG00000065523	Mir192	Mirn192|mir-192|mmu-mir-192	microRNA 192	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139362405-2	chr5	139362305	139362505	+	812.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028469, intron 3 of 4)	intron (NM_028469, intron 3 of 4)	7340.0	NR_029768	723898.0		NR_029768	ENSMUSG00000065593	Mir339	Mirn339|mir-339|mmu-mir-339	microRNA 339	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-35362037-3	chr5	35361928	35362128	+	732.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_046060, exon 1 of 4)	non-coding (NR_046060, exon 1 of 4)	475.0	NR_046060	74429.0	Mm.399502	NR_046060	ENSMUSG00000106762	4930478P22Rik	4933405A14Rik	RIKEN cDNA 4930478P22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-6698952-2	chr5	6698852	6699052	+	706.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B2-int|LTR|ERVL-MaLR	-605212.0	NM_027603	70920.0	Mm.158494	NM_027603	ENSMUSG00000040514	Tex47	4921511H03Rik	testis expressed 47	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-105036514-4	chr3	105036437	105036637	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030249, intron 2 of 5)	intron (NM_030249, intron 2 of 5)	16416.0	NM_001163332	80281.0	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-5842938-2	chr2	5842838	5843038	+	544.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133837, intron 1 of 12)	Lx8|LINE|L1	-2096.0	NM_016918	53893.0	Mm.251904	NM_016918	ENSMUSG00000025817	Nudt5	-	nudix (nucleoside diphosphate linked moiety X)-type motif 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-47587308-3	chr6	47587260	47587460	+	568.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007971, intron 1 of 19)	B2_Mm1a|SINE|B2	7670.0	NM_001146689	14056.0	Mm.246688	NM_007971	ENSMUSG00000029687	Ezh2	Enx-1|Enx1h|KMT6|mKIAA4065	enhancer of zeste 2 polycomb repressive complex 2 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-77800199-2	chr11	77800099	77800299	+	755.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011586, intron 1 of 39)	intron (NM_011586, intron 1 of 39)	-1099.0	NM_001291214	360013.0	Mm.341248	NM_011586	ENSMUSG00000000631	Myo18a	MAJN|MyoPDZ|MysPDZ|SP-R210	myosin XVIIIA	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96268654-4	chr3	96268559	96268759	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178215)	promoter-TSS (NM_178215)	5.0	NM_178215	319154.0	Mm.383293	NM_178215	ENSMUSG00000074403	Hist2h3b	H3-615|H3-616	histone cluster 2, H3b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-47319761-3	chr6	47319657	47319857	+	917.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	75361.0	NM_025771	66797.0	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-13679505-2	chr6	13679405	13679605	+	739.583374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1539.0	NM_175312	101148.0	Mm.354863	NM_175312	ENSMUSG00000042742	Bmt2	AI666701|B630005N14Rik	base methyltransferase of 25S rRNA 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3982046-2	chr12	3981946	3982146	+	916.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001082483, exon 9 of 23)	exon (NM_001082483, exon 9 of 23)	27101.0	NM_001278583	18976.0	Mm.277996	NM_008895	ENSMUSG00000020660	Pomc	ACTH|BE|Beta-LPH|Clip|Gamma-LPH|Npp|Pomc-1|Pomc1|alpha-MSH|alphaMSH|beta-MSH|gamma-MSH	pro-opiomelanocortin-alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-73941966-4	chr17	73941852	73942052	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011723, intron 2 of 35)	intron (NM_011723, intron 2 of 35)	8244.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-14894743-2	chr8	14894667	14894867	+	685.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_012000, exon 2 of 3)	exon (NM_012000, exon 2 of 3)	6231.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	-1.53362919331644	-1.50201671710775	-1.51157659084044	-1.08120497225282	-1.53141005593807	-1.49994505258991	-1.50941244497383	-1.51802371459528	-1.94474658522739	0.577200604274218	1
Merged-chr3-104431111-2	chr3	104431011	104431211	+	573.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	80807.0	NM_001025067	269473.0	Mm.34855	NM_001025067	ENSMUSG00000032913	Lrig2	4632419I10Rik|BB096938|LIG-2	leucine-rich repeats and immunoglobulin-like domains 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-130930153-2	chr2	130930047	130930247	+	888.416626	f0_balb.idr|f1_balb.idr	intron (NM_009730, intron 1 of 28)	intron (NM_009730, intron 1 of 28)	23652.0	NM_009730	11990.0	Mm.119936	NM_009730	ENSMUSG00000027312	Atrn	AW558010|Mgca|mg	attractin	protein-coding	1.31289074912163	1.51682130209117	3.31034019298067	3.29081393659209	2.70889501092488	2.51081974877503	4.05195079403338	3.89025204113275	1.2567602132021	0.367279704445958	0.862214284611162
Merged-chr15-78340197-4	chr15	78340071	78340271	+	754.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358854, intron 5 of 14)	intron (NM_001358854, intron 5 of 14)	-8428.0	NR_106138	102466845.0		NR_106138	ENSMUSG00000099059	Mir7676-2	Gm27790|mmu-mir-7676-2	microRNA 7676-2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-108186454-2	chr6	108186354	108186554	+	622.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145937)	promoter-TSS (NM_145937)	-871.0	NM_145937	58911.0	Mm.439876	NM_145937	ENSMUSG00000030101	Sumf1	AA543204|AI463102|AI851573|FGE	sulfatase modifying factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-40933331-6	chr14	40933233	40933433	+	972.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145928, intron 2 of 8)	intron (NM_145928, intron 2 of 8)	14876.0	NM_001316748	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-19504099-3	chr10	19504015	19504215	+	853.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152785, intron 1 of 2)	intron (NR_152785, intron 1 of 2)	9472.0	NR_152785	102635880.0	Mm.331974	NR_152784	ENSMUSG00000110902	Gm33104	-	predicted gene, 33104	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-53391957-2	chr19	53391857	53392057	+	886.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER2|LTR|ERV1	-1323.0	NM_172429	76479.0	Mm.313687	NM_172429	ENSMUSG00000025024	Smndc1	-	survival motor neuron domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-33996510-3	chr5	33996394	33996594	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001001985, exon 1 of 3)	5' UTR (NM_001001985, exon 1 of 3)	510.0	NM_001001985	269642.0	Mm.274610	NM_001001985	ENSMUSG00000048142	Nat8l	1110038O08Rik|Shati	N-acetyltransferase 8-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-116580138-2	chr8	116580038	116580238	+	582.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029441, intron 5 of 6)	B1_Mus2|SINE|Alu	75123.0	NM_029297	75465.0	Mm.23114	NM_029297	ENSMUSG00000034467	Dynlrb2	1700009A04Rik|DNLC2B|Dncl2b	dynein light chain roadblock-type 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-133046100-3	chr1	133045998	133046198	+	880.1333619999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001099276)	promoter-TSS (NM_001099276)	86.0	NM_001099276	240752.0	Mm.387308	NM_001099276	ENSMUSG00000026447	Pik3c2b	C330011J12Rik|Gm199|PI3K-C2beta|PI3KC2beta	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-26768351-3	chr8	26768250	26768450	+	806.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56073.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-92334555-2	chr5	92334406	92334606	+	648.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310664, intron 2 of 10)	B1_Mur3|SINE|Alu	2679.0	NM_001310664	109979.0	Mm.263514	NM_181728	ENSMUSG00000034842	Art3	4930569O04Rik|ARTC3	ADP-ribosyltransferase 3	protein-coding	-0.111707835415664	-0.241643562492685	-0.246280680786526	-0.249858282812586	-0.254914091339998	-0.240598251917433	0.335336194895054	0.389393611330175	2.94067791761936	0.221573637211116	1
Merged-chr14-46767534-4	chr14	46767430	46767630	+	893.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360041, intron 5 of 7)	intron (NM_001360041, intron 5 of 7)	6989.0	NM_028222	72391.0	Mm.272394	NM_028222	ENSMUSG00000037628	Cdkn3	2410006H10Rik|KAP	cyclin-dependent kinase inhibitor 3	protein-coding	3.28283865076372	3.99675030707203	2.05172045625233	1.96599262626846	5.46523628818333	5.10982012095127	5.21356711999708	4.78935275405859	2.74474487285803	1.27057939391732e-07	1.06853352113692e-05
Merged-chr17-46027814-2	chr17	46027714	46027914	+	557.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025250, intron 2 of 7)	intron (NM_001025250, intron 2 of 7)	-2651.0	NM_001110268	22339.0	Mm.282184	NM_009505	ENSMUSG00000023951	Vegfa	Vegf|Vpf	vascular endothelial growth factor A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-64744687-2	chr8	64744587	64744787	+	553.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178633, intron 13 of 14)	MRLTR33|LTR|ERVK	-11109.0	NM_025436	66234.0	Mm.30119	NM_025436	ENSMUSG00000031604	Msmo1	1500001G16Rik|C78600|DESP4|ERG25|Sc4mol	methylsterol monoxygenase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-50037295-2	chr18	50037190	50037390	+	755.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360935, intron 1 of 1)	intron (NM_001360935, intron 1 of 1)	6306.0	NM_001360935	106869.0	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	3.30239425243864	2.32063331432574	3.501801628021	3.61889479309439	3.25575483788373	2.54775552992285	3.93359119337888	4.16254200210079	0.524119012811582	0.407787639414455	0.891845785649541
Merged-chr3-95311231-4	chr3	95311124	95311324	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-3966.0	NM_029789	76893.0	Mm.181009	NM_029789	ENSMUSG00000015714	Cers2	0610013I17Rik|AI225939|Lass2|TRH3	ceramide synthase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-83845368-4	chr3	83845262	83845462	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3754.0	NM_011905	24088.0	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-75732150-3	chr2	75732057	75732257	+	765.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27494.0	NM_010902	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-87733401-2	chr6	87733301	87733501	+	674.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159697, intron 2 of 7)	MIRb|SINE|MIR	2532.0	NM_001159697	58229.0	Mm.333229	NM_021418	ENSMUSG00000068263	Efcc1	Ccdc48	EF hand and coiled-coil domain containing 1	protein-coding	0.868947719744511	1.76476251255723	1.80296436866828	1.53269351488351	0.872219595593482	1.51457887284225	1.12645769603769	1.65425547640114	-0.745387922568439	0.568279345670052	0.962718661854691
Merged-chr11-120490446-2	chr11	120490346	120490546	+	568.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1391.0	NM_013770	27376.0	Mm.3991	NM_013770	ENSMUSG00000025792	Slc25a10	Dic	solute carrier family 25 (mitochondrial carrier, dicarboxylate transporter), member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115626897-2	chr11	115626797	115626997	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252395, intron 1 of 7)	B1_Mus1|SINE|Alu	1398.0	NM_001252394	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-155481982-2	chr4	155481889	155482089	+	596.833374	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-9372.0	NM_001160017	14688.0	Mm.2344	NM_008142	ENSMUSG00000029064	Gnb1	AA409223|C77571|Gnb-1	guanine nucleotide binding protein (G protein), beta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-19965465-4	chr11	19965373	19965573	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033523, intron 1 of 5)	intron (NM_033523, intron 1 of 5)	41031.0	NM_033523	114716.0	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-73643198-4	chr15	73643117	73643317	+	714.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18473.0	NM_001033219	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-37003402-3	chr6	37003306	37003506	+	737.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347104, intron 19 of 32)	intron (NM_001347104, intron 19 of 32)	-193227.0	NM_008973	19242.0	Mm.279690	NM_008973	ENSMUSG00000029838	Ptn	HARP|HB-GAM|HBBM|HBBN|HBGF-8|HBNF|OSF|Osf-1|Osf1	pleiotrophin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-34898036-3	chr2	34897948	34898148	+	854.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028716, intron 13 of 14)	intron (NM_028716, intron 13 of 14)	15928.0	NM_028716	74016.0	Mm.65691	NM_028716	ENSMUSG00000026873	Phf19	3110009G19Rik|3321402G02Rik	PHD finger protein 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-43527304-4	chr19	43527163	43527363	+	915.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2658.0	NM_010324	14718.0	Mm.19039	NM_010324	ENSMUSG00000025190	Got1	AI789014|Got-1|cAspAT|cCAT	glutamic-oxaloacetic transaminase 1, soluble	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95667453-4	chr3	95667383	95667583	+	951.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	8762.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-23499815-2	chr11	23499715	23499915	+	780.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-1776.0	NM_172391	268390.0	Mm.13148	NM_172391	ENSMUSG00000020288	Ahsa2	-	AHA1, activator of heat shock protein ATPase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-84338784-2	chr7	84338684	84338884	+	674.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007488, intron 5 of 18)	intron (NM_007488, intron 5 of 18)	71254.0	NM_007488	11864.0	Mm.38594	NM_007488	ENSMUSG00000015709	Arnt2	Hif-2b|bHLHe1|mKIAA0307	aryl hydrocarbon receptor nuclear translocator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-98614135-1	chr10	98614035	98614235	+	544.0	f1_balb.idr	Intergenic	Intergenic	-262268.0	NR_045179	667438.0	Mm.414522	NR_045179	ENSMUSG00000112896	Gm8633	EG667438	predicted gene 8633	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167351620-4	chr2	167351539	167351739	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2461.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-98676710-2	chr15	98676610	98676810	+	719.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172612, intron 1 of 4)	intron (NM_172612, intron 1 of 4)	751.0	NM_172612	223881.0	Mm.274010	NM_172612	ENSMUSG00000054855	Rnd1	A830014L09Rik|Arhs	Rho family GTPase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89908206-2	chr3	89908106	89908306	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010559, intron 1 of 9)	intron (NM_010559, intron 1 of 9)	4990.0	NM_001310676	16194.0	Mm.2856	NM_010559	ENSMUSG00000027947	Il6ra	CD126|IL-6R|IL-6R-alpha|IL-6RA|Il6r	interleukin 6 receptor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111945987-2	chr12	111945887	111946087	+	644.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1505.0	NR_029464	77675.0	Mm.98331	NR_029464	ENSMUSG00000113769	5033406O09Rik	9130204G15Rik	RIKEN cDNA 5033406O09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-34481008-4	chr1	34480894	34481094	+	991.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17418.0	NM_009355	21755.0	Mm.10725	NM_009355	ENSMUSG00000026125	Prss39	Tesp1	protease, serine 39	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88484960-2	chr3	88484860	88485060	+	873.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_019390, exon 6 of 10)	exon (NM_019390, exon 6 of 10)	8352.0	NM_019390	16905.0	Mm.243014	NM_019390	ENSMUSG00000028063	Lmna	Dhe	lamin A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10847042-2	chr19	10846942	10847142	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023044, intron 1 of 7)	ID4|SINE|ID	4498.0	NM_023044	65221.0	Mm.27387	NM_023044	ENSMUSG00000024737	Slc15a3	Ci1|cI-1	solute carrier family 15, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127581831-2	chr10	127581731	127581931	+	986.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_008512, exon 20 of 89)	exon (NM_008512, exon 20 of 89)	39317.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	1.85104541257013	1.0457191790874	2.66201819190788	1.85064086844881	1.64645811516392	1.05096711096683	1.2756916055845	1.86112029972613	-1.36550174290416	0.242830141069407	0.74021240664399
Merged-chr1-152543990-2	chr1	152543890	152544090	+	819.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 9 of 17)	intron (NM_016846, intron 9 of 17)	81227.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-181867103-2	chr2	181867003	181867203	+	590.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025901, intron 2 of 2)	B3|SINE|B2	2743.0	NM_025901	67005.0	Mm.271986	NM_025901	ENSMUSG00000038628	Polr3k	12.3kDa|1500004O14Rik|AI196849|AU014893|C11|RPC10|RPC11	polymerase (RNA) III (DNA directed) polypeptide K	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-3173306-1	chr11	3173206	3173406	+	1000.0	f1_balb.idr	intron (NM_030207, intron 6 of 32)	B1_Mur2|SINE|Alu	20157.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-102686497-2	chr13	102686397	102686597	+	803.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR23|LTR|ERV1	-7050.0	NM_001360519	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53799494-3	chr4	53799384	53799584	+	962.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19779.0	NM_009317	21350.0	Mm.56955	NM_009317	ENSMUSG00000028417	Tal2	bHLHa19	T cell acute lymphocytic leukemia 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27643356-4	chr17	27643246	27643446	+	807.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8104.0	NM_025963	67097.0	Mm.275810	NM_025963	ENSMUSG00000052146	Rps10	2210402A09Rik	ribosomal protein S10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-143037286-1	chr5	143037186	143037386	+	553.0	f1_c57bl6.idr	intron (NM_001359851, intron 12 of 15)	intron (NM_001359851, intron 12 of 15)	75734.0	NM_207110	108086.0	Mm.381440	NM_080561	ENSMUSG00000045078	Rnf216	2810055G22Rik|AI647468|AU019462|C86502|F830018F18Rik|TRIAD3|UIP83|Ubce7ip1	ring finger protein 216	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-91748381-4	chr12	91748289	91748489	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 1 of 6)	intron (NM_175367, intron 1 of 6)	38047.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-25487058-2	chr9	25486958	25487158	+	594.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 2 of 7)	intron (NM_026189, intron 2 of 7)	5461.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-32005069-2	chr16	32004969	32005169	+	704.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-1782.0	NM_177103	320213.0	Mm.152890	NM_023801	ENSMUSG00000022772	Senp5	6230429P13Rik|A730063F07Rik|AI851888|BB189556|SMT3IP3	SUMO/sentrin specific peptidase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-12441678-3	chr19	12441586	12441786	+	978.2777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13781.0	NM_019540	56093.0	Mm.285849	NM_019540	ENSMUSG00000040065	Pfpl	Epcs5|Epcs50	pore forming protein-like	protein-coding	4.56162019433575	4.35219110007633	4.31625496869085	4.57521266495255	3.5096434359284	3.2621114375464	2.31643837294544	2.60940156674853	-2.05716042893988	5.95276778677609e-05	0.00202901442914033
Merged-chr17-46388429-4	chr17	46388323	46388523	+	927.158325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021346, intron 2 of 7)	intron (NM_021346, intron 2 of 7)	4657.0	NM_021346	57908.0	Mm.439916	NM_021346	ENSMUSG00000015597	Zfp318	2610034E08Rik|D530032D06Rik|TZF|Znf318	zinc finger protein 318	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128484242-2	chr10	128484142	128484342	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114097, intron 23 of 27)	intron (NM_001114097, intron 23 of 27)	8767.0	NM_001317220	17904.0	Mm.337074	NM_010860	ENSMUSG00000090841	Myl6	ESMLC|LC17|LC17-GI|MLC-3|MLC1SM|Myln	myosin, light polypeptide 6, alkali, smooth muscle and non-muscle	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-85587525-4	chr6	85587373	85587573	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145223)	promoter-TSS (NM_145223)	-58.0	NM_145223	236266.0	Mm.246967	NM_145223	ENSMUSG00000063810	Alms1	bbb	ALMS1, centrosome and basal body associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119395342-2	chr11	119395242	119395442	+	656.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4870.0	NR_035453	100316690.0		NR_035453	ENSMUSG00000088015	Mir1932	mir-1932|mmu-mir-1932	microRNA 1932	ncRNA	-0.778047400830726	-0.899388325918845	-0.906628590570071	-0.908568608772561	-0.552013603193575	-0.896875237439394	-0.906072351344798	-0.618317437363368	1.89319603140518	0.51387425451653	1
Merged-chr4-11389199-2	chr4	11389099	11389299	+	726.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-2416.0	NM_194055	207920.0	Mm.387719	NM_194055	ENSMUSG00000040728	Esrp1	2210008M09Rik|A630065D16|BC031468|Rbm35a	epithelial splicing regulatory protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-81670364-1	chr16	81670264	81670464	+	552.0	f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	469667.0	NM_010954	17968.0	Mm.433941	NM_010954	ENSMUSG00000022762	Ncam2	Ncam-2|Ocam|RNCAM	neural cell adhesion molecule 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-25870718-2	chr17	25870618	25870818	+	785.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1980.0	NM_026633	68241.0	Mm.328870	NM_026633	ENSMUSG00000025732	Mcrip2	9530058B02Rik|Fam195a	MAPK regulated corepressor interacting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-71701103-2	chr5	71701003	71701203	+	756.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008069, intron 3 of 8)	CpG	1087.0	NM_008069	14400.0	Mm.38567	NM_008069	ENSMUSG00000029212	Gabrb1	AW061132|B230208N19Rik|Gabrb-1	gamma-aminobutyric acid (GABA) A receptor, subunit beta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25121275-2	chr7	25121175	25121375	+	838.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163556, intron 1 of 13)	intron (NM_001163556, intron 1 of 13)	11185.0	NM_011138	18987.0	Mm.76683	NM_011138	ENSMUSG00000008496	Pou2f2	Oct-2|Oct2a|Oct2b|Oct2c|Oct2d|Otf-2|Otf2	POU domain, class 2, transcription factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-125012944-4	chr8	125012783	125012983	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016909)	promoter-TSS (NM_016909)	-114.0	NM_016909	53424.0	Mm.5248	NM_016909	ENSMUSG00000056820	Tsnax	R74833|Trax	translin-associated factor X	protein-coding	2.61301109345732	2.27836393520118	3.43596599862576	3.34115059585117	2.75018879093399	3.65493522965723	3.6091532925585	3.69069985115228	0.759153923787028	0.23284641195442	0.727930149661469
Merged-chr16-95835137-1	chr16	95835037	95835237	+	552.0	f1_c57bl6.idr	intron (NR_040485, intron 3 of 3)	intron (NR_040485, intron 3 of 3)	63576.0	NR_040485	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-38483264-2	chr5	38483164	38483364	+	856.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145559, intron 2 of 10)	intron (NM_145559, intron 2 of 10)	121.0	NM_001012363	117591.0	Mm.260137	NM_145559	ENSMUSG00000005107	Slc2a9	Glut9|SLC2A9B|SLC2a9A	solute carrier family 2 (facilitated glucose transporter), member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-108579342-4	chr4	108579252	108579452	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172697)	promoter-TSS (NM_172697)	-16.0	NM_172697	230596.0	Mm.157534	NM_172697	ENSMUSG00000063800	Prpf38a	2410002M20Rik	PRP38 pre-mRNA processing factor 38 (yeast) domain containing A	protein-coding	4.3838298456687	5.27560375271654	5.79212191137287	4.75055838717062	5.16460012917778	5.87267844024591	6.22798365014328	4.48633335925441	0.502407363539182	0.211628966626941	0.700512509175108
Merged-chr12-108931643-4	chr12	108931542	108931742	+	842.9375	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177602, intron 2 of 6)	intron (NM_177602, intron 2 of 6)	37370.0	NM_177602	212198.0	Mm.342082	NM_177602	ENSMUSG00000040877	Wdr25	B930090D16Rik	WD repeat domain 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-88517816-2	chr6	88517716	88517916	+	676.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016906, intron 2 of 11)	intron (NM_016906, intron 2 of 11)	984.0	NM_016906	53421.0	Mm.28375	NM_016906	ENSMUSG00000030082	Sec61a1	AA408394|AA410007|Sec61a	Sec61 alpha 1 subunit (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-10319306-4	chr17	10319216	10319416	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159517)	promoter-TSS (NM_001159517)	45.0	NM_021881	19317.0	Mm.130694	NM_021881	ENSMUSG00000062078	Qk	1110003F05Rik|1500005P18|QkI|l(17)-1Wis|l17Wis1	quaking	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83562440-3	chr11	83562318	83562518	+	879.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16218.0	NM_011338	20308.0	Mm.416125	NM_011338	ENSMUSG00000019122	Ccl9	CCF18|MRP-2|Scya10|Scya9	chemokine (C-C motif) ligand 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-99965172-4	chr12	99965072	99965272	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164427, intron 1 of 2)	intron (NM_001164427, intron 1 of 2)	673.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-38632242-3	chr16	38632150	38632350	+	772.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020260, intron 3 of 11)	B3|SINE|B2	69436.0	NM_026407	67846.0	Mm.310476	NM_026407	ENSMUSG00000002845	Tmem39a	2610033C09Rik	transmembrane protein 39a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-134671737-2	chr7	134671637	134671837	+	660.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033420, intron 1 of 51)	intron (NM_001033420, intron 1 of 51)	1050.0	NM_001033420	330662.0	Mm.436572	NM_001033420	ENSMUSG00000058325	Dock1	9130006G06Rik|AI854900|D630004B07Rik|b2b3190Clo	dedicator of cytokinesis 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36070090-3	chr1	36069955	36070155	+	683.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015818, intron 1 of 1)	intron (NM_015818, intron 1 of 1)	1655.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-13041480-2	chr7	13041380	13041580	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001290453)	TTS (NM_001290453)	-3205.0	NM_001168469	22192.0	Mm.196580	NM_145578	ENSMUSG00000005575	Ube2m	2510040H03Rik|UBC12|Ubc-rs2	ubiquitin-conjugating enzyme E2M	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-145247817-2	chr4	145247717	145247917	+	842.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011610)	promoter-TSS (NM_011610)	-947.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-56732162-3	chr19	56732064	56732264	+	822.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9792.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-80345053-2	chr12	80344953	80345153	+	633.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_177267, intron 8 of 8)	intron (NM_177267, intron 8 of 8)	46624.0	NR_037207	100526530.0		NR_037207	ENSMUSG00000105972	Mir1843a	Mir1843|mir-1843a|mmu-mir-1843|mmu-mir-1843a	microRNA 1843a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-35327077-4	chr2	35326970	35327170	+	985.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013515, intron 1 of 6)	intron (NM_013515, intron 1 of 6)	9939.0	NM_013515	13830.0	Mm.295284	NM_013515	ENSMUSG00000026880	Stom	Epb7.2	stomatin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-54136901-2	chr10	54136801	54137001	+	580.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	60979.0	NR_038016	100502920.0	Mm.403982	NR_038016	ENSMUSG00000097069	Gm16998	-	predicted gene, 16998	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-49518636-3	chr4	49518550	49518750	+	832.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178603, intron 1 of 1)	MTD|LTR|ERVL-MaLR	2433.0	NM_178603	28028.0	Mm.30052	NM_178603	ENSMUSG00000044018	Mrpl50	AA408971|AI317351|D4Wsu125e	mitochondrial ribosomal protein L50	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-143056719-4	chr5	143056611	143056811	+	974.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359851, intron 12 of 15)	intron (NM_001359851, intron 12 of 15)	56309.0	NM_207110	108086.0	Mm.381440	NM_080561	ENSMUSG00000045078	Rnf216	2810055G22Rik|AI647468|AU019462|C86502|F830018F18Rik|TRIAD3|UIP83|Ubce7ip1	ring finger protein 216	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-121450248-4	chr2	121450180	121450380	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001025371)	TTS (NM_001025371)	1082.0	NR_110986	378702.0	Mm.262252	NM_011354	ENSMUSG00000074884	Serf2	C80083|Msmac1l|m4F5rel	small EDRK-rich factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53071676-2	chr4	53071576	53071776	+	866.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 25 of 49)	intron (NM_013454, intron 25 of 49)	59796.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-43556792-2	chr13	43556692	43556892	+	636.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081059, intron 1 of 8)	ID_B1|SINE|B4	3399.0	NM_001081059	76137.0	Mm.426290	NM_001081059	ENSMUSG00000021371	Mcur1	6230416A05Rik|AU015498|AV136929|AW554392|C88263|Ccdc90a	mitochondrial calcium uniporter regulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-79228786-3	chr2	79228686	79228886	+	669.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-26640.0	NM_010576	16401.0	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-129475499-1	chr6	129475399	129475599	+	555.0	f1_balb.idr	Intergenic	PB1D10|SINE|Alu	-2720.0	NR_132130	56644.0	Mm.239516	NM_020008	ENSMUSG00000079293	Clec7a	BGR|Clecsf12|beta-GR	C-type lectin domain family 7, member a	protein-coding	0.0249386434789933	0.0649703458346291	0.0522980601405748	0.283350376224315	0.426890546314911	1.77571496789188	0.0551277936632611	0.287766764224475	3.93854061463451	0.0343136072033573	0.261448767501618
Merged-chr15-85337408-2	chr15	85337308	85337508	+	572.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_016843, intron 1 of 11)	intron (NM_016843, intron 1 of 11)	1027.0	NM_016843	54138.0	Mm.248906	NM_016843	ENSMUSG00000016541	Atxn10	AI325283|C77170|E46|Sca10|TEG-169|Tex169	ataxin 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-31339035-3	chr15	31338915	31339115	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027496, intron 1 of 3)	L1MB4|LINE|L1	28744.0	NM_001357923	67434.0	Mm.102470	NM_026153	ENSMUSG00000022237	Ankrd33b	0610012A05Rik|3021401C12Rik|5730557B15Rik	ankyrin repeat domain 33B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-87405378-2	chr17	87405278	87405478	+	786.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029298, intron 5 of 6)	intron (NM_029298, intron 5 of 6)	22363.0	NM_029298	75467.0	Mm.50108	NM_029298	ENSMUSG00000036557	Stpg4	1700011E24Rik|GSE	sperm tail PG rich repeat containing 4	protein-coding	-1.84354474832578	-1.81325489144778	-1.53416061964661	-1.82993901100912	-1.8414184563789	-1.81126990231468	-1.82034119297928	-1.82859217979378	-1.52252619601533	0.665276690233728	1
Merged-chr3-42934076-2	chr3	42933976	42934176	+	582.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17D2|LTR|ERVK	1191458.0	NM_027271	73852.0	Mm.29006	NM_027271	ENSMUSG00000025766	D3Ertd751e	2810009O15Rik|4930415G15Rik	DNA segment, Chr 3, ERATO Doi 751, expressed	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-60506882-2	chr3	60506764	60506964	+	800.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253711, intron 1 of 7)	intron (NM_001253711, intron 1 of 7)	5685.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-25861980-4	chr14	25861883	25862083	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013469, intron 1 of 14)	intron (NM_013469, intron 1 of 14)	19828.0	NM_013469	11744.0	Mm.294083	NM_013469	ENSMUSG00000021866	Anxa11	A830099O17Rik|Anx11	annexin A11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-77985202-2	chr11	77985102	77985302	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_174852, intron 2 of 14)	intron (NM_174852, intron 2 of 14)	2386.0	NM_174852	268448.0	Mm.274329	NM_174852	ENSMUSG00000037791	Phf12	2410142K10Rik|F630045O13|PF1|mKIAA1523	PHD finger protein 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-88128622-3	chr15	88128541	88128741	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-186233.0	NR_045281	328579.0	Mm.146839	NR_045281	ENSMUSG00000116331	B230214G05Rik	B230214G05	RIKEN cDNA B230214G05 gene	ncRNA	2.12080864677163	1.72585559565908	1.62127496336324	1.53419741675522	6.27916774639481	6.41005000932044	6.03300806422414	6.18555175632073	7.026470914118	9.05349832000502e-16	6.26676189481271e-13
Merged-chr17-6736101-2	chr17	6736001	6736201	+	726.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_183368, intron 7 of 8)	intron (NM_183368, intron 7 of 8)	30271.0	NM_183368	83672.0	Mm.442201	NM_031395	ENSMUSG00000041831	Sytl3	A430092N21|Slp3|Slp3-a|Slp3-b|mFLJ00307	synaptotagmin-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-134173364-2	chr5	134173264	134173464	+	724.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_033572, intron 1 of 10)	B3A|SINE|B2	3403.0	NM_033572	94254.0	Mm.29508	NM_033572	ENSMUSG00000061979	Rcc1l	5730496C04Rik|AU019812|Wbscr16	reculator of chromosome condensation 1 like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-60790310-2	chr14	60790210	60790410	+	828.799988	f1_balb.idr|f1_c57bl6.idr	intron (NM_027436, intron 3 of 18)	intron (NM_027436, intron 3 of 18)	5744.0	NR_040642	70478.0	Mm.274650	NM_027436	ENSMUSG00000021993	Mipep	5730405E07Rik|MIP	mitochondrial intermediate peptidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141995301-2	chr4	141995201	141995401	+	814.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177868, intron 2 of 31)	intron (NM_177868, intron 2 of 31)	12309.0	NR_040672	545691.0	Mm.332015	NR_040672	ENSMUSG00000085424	Fhad1os1	Gm13037	forkhead-associated (FHA) phosphopeptide binding domain 1, opposite strand 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-67278648-4	chr18	67278538	67278738	+	985.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10585.0	NM_053261	114663.0	Mm.34079	NM_053261	ENSMUSG00000024525	Impa2	2210415D20Rik|AI326924|AW259601	inositol (myo)-1(or 4)-monophosphatase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-57290977-4	chr17	57290875	57291075	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163816, intron 1 of 25)	intron (NM_001163816, intron 1 of 25)	11875.0	NM_001163815	22324.0	Mm.248172	NM_011691	ENSMUSG00000034116	Vav1	Vav|vav-T	vav 1 oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46132459-4	chr19	46132406	46132606	+	848.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007703, intron 1 of 3)	(CA)n|Simple_repeat|Simple_repeat	607.0	NM_007703	12686.0	Mm.21806	NM_007703	ENSMUSG00000038754	Elovl3	CIN-2|Cig30	elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96171075-3	chr3	96171012	96171212	+	834.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_181409, exon 17 of 17)	exon (NM_181409, exon 17 of 17)	-1394.0	NM_153053	107701.0	Mm.219671	NM_153053	ENSMUSG00000068856	Sf3b4	SF3b49|SF3b50|Sap49	splicing factor 3b, subunit 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-143729548-1	chr5	143729448	143729648	+	543.0	f1_c57bl6.idr	intron (NM_029749, intron 1 of 17)	intron (NM_029749, intron 1 of 17)	2732.0	NM_029749	76800.0	Mm.259620	NM_029749	ENSMUSG00000051306	Usp42	2410140K03Rik|3110031A07Rik|A630018G05Rik|D5Ertd591e	ubiquitin specific peptidase 42	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-116490723-4	chr7	116490633	116490833	+	751.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID|SINE|ID	-13636.0	NM_001130479	53322.0	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-75932427-4	chr10	75932304	75932504	+	896.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175329)	promoter-TSS (NM_175329)	98.0	NM_001306184	17385.0	Mm.4561	NM_008606	ENSMUSG00000000901	Mmp11	MMP-11|SL-3|ST3|Stmy3	matrix metallopeptidase 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-110678200-4	chr9	110678113	110678313	+	974.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028312, intron 1 of 6)	RLTR28|LTR|ERVL	21710.0	NM_028312	72654.0	Mm.249115	NM_028312	ENSMUSG00000019659	Ccdc12	2700094L05Rik|C76605	coiled-coil domain containing 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45871222-1	chr7	45871122	45871322	+	565.0	f1_c57bl6.idr	Intergenic	Intergenic	-1618.0	NM_133950	68137.0	Mm.298433	NM_133950	ENSMUSG00000002778	Kdelr1	8030486F04Rik|AW215843|Erd2.1	KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 1	protein-coding	2.1756821920017	2.53657837467886	1.64317253287967	1.77696977001906	2.19304858336431	2.04921669851942	2.8444318917848	2.1902237216729	0.731394417289199	0.416575281318398	0.897222495742637
Merged-chr8-120688086-2	chr8	120687986	120688186	+	565.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	G-rich|Low_complexity|Low_complexity	19766.0	NM_001293559	12857.0	Mm.386758	NM_009941	ENSMUSG00000031818	Cox4i1	AL024441|COX|COX IV-1|COXIV|Cox4|Cox4a|IV-1	cytochrome c oxidase subunit 4I1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-68474824-2	chr18	68474724	68474924	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45504.0	NM_001301372	17200.0	Mm.426053	NM_008560	ENSMUSG00000045569	Mc2r	ACTH-R|ACTHR|MC2-R	melanocortin 2 receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-120666845-2	chr6	120666745	120666945	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001128151, intron 1 of 18)	CpG-12437	424.0	NM_001128151	330409.0	Mm.333357	NM_001128151	ENSMUSG00000071226	Cecr2	2610101O16Rik|2810409N01Rik|Gtl4|mKIAA1740	CECR2, histone acetyl-lysine reader	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-99133482-4	chr10	99133421	99133621	+	868.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153333, intron 4 of 12)	intron (NR_153333, intron 4 of 12)	25386.0	NM_015737	14426.0	Mm.314	NM_015737	ENSMUSG00000090035	Galnt4	AV011803	polypeptide N-acetylgalactosaminyltransferase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-113556699-4	chr13	113556603	113556803	+	947.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-53859.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-103229339-4	chr9	103229200	103229400	+	900.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133977, intron 1 of 16)	intron (NM_133977, intron 1 of 16)	986.0	NM_133977	22041.0	Mm.37214	NM_133977	ENSMUSG00000032554	Trf	AI266983|Cd176|HP|Tf|Tfn|hpx	transferrin	protein-coding	3.35075529122912	3.29437033315043	3.67786352990068	3.00719341295053	2.96241026474397	2.75527431724653	2.91156501919787	1.86252233663143	-1.15695875057736	0.0817156615643465	0.436895653665923
Merged-chr6-141048455-1	chr6	141048355	141048555	+	764.0	f0_balb.idr	Intergenic	Intergenic	-200814.0	NM_018779	54611.0	Mm.103728	NM_018779	ENSMUSG00000041741	Pde3a	A930022O17Rik|C87899	phosphodiesterase 3A, cGMP inhibited	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-25110087-3	chr8	25109940	25110140	+	940.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_155282)	TTS (NR_155282)	7861.0	NR_155282	74744.0	Mm.117802	NR_155282		5830408C22Rik	2700026D01Rik	RIKEN cDNA 5830408C22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-153451399-2	chr1	153451299	153451499	+	588.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033162, intron 9 of 9)	intron (NM_001033162, intron 9 of 9)	26190.0	NM_001033162	71836.0	Mm.49460	NM_001033162	ENSMUSG00000042708	Shcbp1l	1700012A16Rik	Shc SH2-domain binding protein 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-31550874-3	chr11	31550777	31550977	+	667.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	120985.0	NM_001024919	69556.0	Mm.34183	NM_001024919	ENSMUSG00000044502	Bod1	2310022M17Rik|BOD2.1|Fam44b	biorientation of chromosomes in cell division 1	protein-coding	-0.294283457775873	-0.835824321719341	-0.5173623935085	-0.842587144364541	-0.845786502079999	-0.833089705273528	-0.839667450545354	-0.842190943920778	-3.03486338161508	0.310541088100687	1
Merged-chr15-79514130-3	chr15	79514028	79514228	+	762.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2280.0	NM_134090	105785.0	Mm.298199	NM_134090	ENSMUSG00000010830	Kdelr3	AI173274	KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-40656092-4	chr12	40655978	40656178	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 8 of 52)	intron (NM_172803, intron 8 of 52)	210025.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80860911-4	chr7	80860821	80861021	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1187.0	NM_009553	22691.0	Mm.358645	NM_009553	ENSMUSG00000038797	Zscan2	Zfp-29|Zfp29	zinc finger and SCAN domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-118525482-2	chr1	118525382	118525582	+	597.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359345, intron 23 of 38)	intron (NM_001359345, intron 23 of 38)	-66217.0	NR_027901	68204.0	Mm.443536	NR_027901	ENSMUSG00000107722	2900060B14Rik	-	RIKEN cDNA 2900060B14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-77825297-4	chr14	77825204	77825404	+	997.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_025384)	TTS (NM_025384)	-26336.0	NM_001033440	380920.0	Mm.297771	NM_001033440	ENSMUSG00000075512	Gm1587	-	predicted gene 1587	protein-coding	3.9209863480985	3.68566576636331	2.23737517401321	2.87144142333829	2.04910657391389	4.2154260600558	1.49217567806008	2.64879979372054	-0.461247965703149	0.583819380914343	0.966605096441162
Merged-chr12-85344425-3	chr12	85344317	85344517	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026775, intron 3 of 4)	intron (NM_026775, intron 3 of 4)	-5055.0	NM_145138	217718.0	Mm.29071	NM_145138	ENSMUSG00000034290	Nek9	C130021H08Rik	NIMA (never in mitosis gene a)-related expressed kinase 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-121442018-2	chr2	121441907	121442107	+	664.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145973, intron 2 of 10)	intron (NM_145973, intron 2 of 10)	594.0	NM_145973	269344.0	Mm.330522	NM_145973	ENSMUSG00000027246	Ell3	A930015D22Rik	elongation factor RNA polymerase II-like 3	protein-coding	0.414114596395373	0.281864125964018	1.17322876340088	0.839818049054759	0.778586055384888	0.283621394712322	0.275766153701415	0.269018681702557	-1.7924251897802	0.346299883984732	1
Merged-chr12-76369557-4	chr12	76369462	76369662	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001172104)	promoter-TSS (NM_001172104)	-2.0	NM_028356	109929.0	Mm.41880	NM_028356	ENSMUSG00000056459	Zbtb25	2810462M08Rik|2900064P18Rik|AI842128|Kup|Zfp-50|Zfp50	zinc finger and BTB domain containing 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-5401564-4	chr6	5401448	5401648	+	914.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355662, intron 2 of 4)	Lx8|LINE|L1	11138.0	NM_001355662	65255.0	Mm.51340	NM_023048	ENSMUSG00000042607	Asb4	8430401O13Rik|AV117194|AW060255	ankyrin repeat and SOCS box-containing 4	protein-coding	-0.848598212984207	-1.0872589546502	-1.09814238002429	-1.10530268522372	-1.10789828006858	-1.08490047097035	-1.09567861107749	-0.683615635754006	0.687562602464998	0.835498131509325	1
Merged-chr1-134494599-4	chr1	134494521	134494721	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145510)	promoter-TSS (NM_145510)	-39.0	NM_145510	98710.0	Mm.198119	NM_145510	ENSMUSG00000042229	Rabif	AI842864|AW549708|E130318E12Rik|MSS4|RASGFR3	RAB interacting factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-58031377-3	chr1	58031297	58031497	+	730.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009676, intron 1 of 34)	intron (NM_009676, intron 1 of 34)	1428.0	NM_009676	11761.0	Mm.26787	NM_009676	ENSMUSG00000063558	Aox1	AI196512|AI255253|Ao|Aox-1|Aox-2|Aox2|Moro|Ro	aldehyde oxidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-53148644-1	chr18	53148544	53148744	+	569.0	f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-27648.0	NM_001357463	67804.0	Mm.252171	NM_026386	ENSMUSG00000034484	Snx2	0610030A03Rik	sorting nexin 2	protein-coding	3.09904811197289	3.60711187321458	3.54866179914521	2.55040510167132	1.60910388603292	2.8726102243777	2.36631803155463	1.69876692148181	-1.9333672089574	0.012976523017226	0.131088269412626
Merged-chr12-79613736-7	chr12	79613559	79613759	+	951.0714109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	311074.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70695891-4	chr8	70695821	70696021	+	952.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1818.0	NM_010592	16478.0	Mm.419851	NM_010592	ENSMUSG00000071076	Jund	Jund1	jun D proto-oncogene	protein-coding	3.58449566074978	3.34899571786821	1.54204538886475	2.19354966429835	3.34771651422859	2.16031609222337	3.6207179445993	3.23952107752997	0.447902228887141	0.575019977284557	0.965286201225318
Merged-chr14-105732767-8	chr14	105732685	105732885	+	911.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-109015.0	NR_105814	102465207.0		NR_105814	ENSMUSG00000098780	Mir6390	Gm27562|mmu-mir-6390	microRNA 6390	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-63793869-4	chr9	63793796	63793996	+	910.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35902.0	NM_016769	17127.0	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-53461171-2	chr3	53461071	53461271	+	696.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_172501, intron 3 of 6)	B4|SINE|B4	2087.0	NM_172501	212114.0	Mm.85744	NM_172501	ENSMUSG00000042997	Nhlrc3	4833441N19|8030451K01Rik|mKIAA4083	NHL repeat containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127777061-4	chr7	127776951	127777151	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178029)	promoter-TSS (NM_178029)	-338.0	NM_178029	233904.0	Mm.435494	NM_010940	ENSMUSG00000042308	Setd1a	BC010250|KMT2F|Nsccn1|mKIAA0339|mNSC1	SET domain containing 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26648603-2	chr17	26648503	26648703	+	577.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026170, intron 9 of 9)	B1_Mus2|SINE|Alu	-27793.0	NM_025272	11974.0	Mm.22602	NM_025272	ENSMUSG00000015575	Atp6v0e	Atp6k|Atp6v0e1|M9.2	ATPase, H+ transporting, lysosomal V0 subunit E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135713631-4	chr5	135713541	135713741	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008898, intron 1 of 15)	intron (NM_008898, intron 1 of 15)	22248.0	NR_106001	102466791.0		NR_106001	ENSMUSG00000099197	Mir7034	Gm27372|mmu-mir-7034	microRNA 7034	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-73623242-2	chr15	73623142	73623342	+	763.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033219, intron 1 of 7)	intron (NM_001033219, intron 1 of 7)	1502.0	NM_001033219	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-66919565-4	chr15	66919451	66919651	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_018865, exon 5 of 5)	3' UTR (NM_018865, exon 5 of 5)	28158.0	NM_018865	22402.0	Mm.10222	NM_018865	ENSMUSG00000005124	Wisp1	AW146261|CCN4|Elm1	WNT1 inducible signaling pathway protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43963950-2	chr4	43963850	43964050	+	712.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027450, intron 1 of 4)	intron (NM_027450, intron 1 of 4)	6248.0	NM_027450	384009.0	Mm.22213	NM_027450	ENSMUSG00000028480	Glipr2	5730414A08Rik|C77180|GAPR-1	GLI pathogenesis-related 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-9585077-2	chr18	9584977	9585177	+	837.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17A-int|LTR|ERVK	34392.0	NM_007593	26369.0	Mm.195831	NM_007593	ENSMUSG00000050996	Cetn1	caltractin	centrin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-56324780-3	chr9	56324668	56324868	+	714.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172924, intron 2 of 6)	intron (NM_172924, intron 2 of 6)	93282.0	NM_172924	244895.0	Mm.490331	NM_172924	ENSMUSG00000074305	Peak1	1110049L02Rik|9530046P14|AA690169|BE132841|C230081A13Rik|SGK269|mKIAA2002	pseudopodium-enriched atypical kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-110529190-4	chr9	110529079	110529279	+	981.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-3418.0	NM_001081340	235626.0	Mm.288949	NM_001081340	ENSMUSG00000044791	Setd2	4921524K10Rik|BC031601|KMT3A	SET domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-143532236-3	chr5	143532149	143532349	+	908.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-4218.0	NM_001347530	19353.0	Mm.292510	NM_009007	ENSMUSG00000001847	Rac1	AL023026|D5Ertd559e	Rac family small GTPase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191287185-2	chr1	191287085	191287285	+	854.6666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30933.0	NM_025424	66208.0	Mm.46444	NM_025424	ENSMUSG00000037499	Nenf	1110060M21Rik|SCIRP10|Spuf	neuron derived neurotrophic factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33584846-1	chr16	33584746	33584946	+	546.0	f1_balb.idr	intron (NM_001083902, intron 4 of 11)	intron (NM_001083902, intron 4 of 11)	66251.0	NM_001083902	171286.0	Mm.35253	NM_134251	ENSMUSG00000035506	Slc12a8	CCC9|E330020C02Rik	solute carrier family 12 (potassium/chloride transporters), member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-53349937-2	chr11	53349837	53350037	+	578.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033565)	promoter-TSS (NM_033565)	-830.0	NM_033565	93736.0	Mm.395281	NM_033565	ENSMUSG00000049470	Aff4	AF5Q31|Alf4|Laf4l|MCEF	AF4/FMR2 family, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-131180161-4	chr2	131180058	131180258	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007682)	promoter-TSS (NM_007682)	-91.0	NM_007682	12616.0	Mm.440169	NM_007682	ENSMUSG00000068267	Cenpb	CENP-B	centromere protein B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-34157029-2	chr8	34156929	34157129	+	713.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026432, intron 1 of 5)	intron (NM_026432, intron 1 of 5)	2466.0	NM_026432	67887.0	Mm.290353	NM_026432	ENSMUSG00000031532	Saraf	1810045K07Rik|Tmem66	store-operated calcium entry-associated regulatory factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97050767-4	chr11	97050653	97050853	+	839.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081434)	promoter-TSS (NM_001081434)	-67.0	NM_001310509	71240.0	Mm.190450	NM_001081434	ENSMUSG00000038534	Osbpl7	4933437E18Rik	oxysterol binding protein-like 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-4071732-2	chr7	4071632	4071832	+	735.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8528.0	NM_001302676	52855.0	Mm.290880	NM_178611	ENSMUSG00000055541	Lair1	5133400O11Rik|BB115266|D7Bwg0421e|Lair-1	leukocyte-associated Ig-like receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-79807882-4	chr12	79807794	79807994	+	901.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 10 of 10)	intron (NM_009014, intron 10 of 10)	116839.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-59198401-2	chr19	59198301	59198501	+	967.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21247.0	NM_207261	332396.0	Mm.329947	NM_207261	ENSMUSG00000040901	Kcnk18	Gm781|Tresk|Tresk-2|Trik	potassium channel, subfamily K, member 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-37641204-2	chr18	37641104	37641304	+	871.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_175770, exon 2 of 2)	3' UTR (NM_175770, exon 2 of 2)	-2481.0	NM_001159275	83885.0	Mm.193029	NM_001159275	ENSMUSG00000050304	Slc25a2	Ornt2	solute carrier family 25 (mitochondrial carrier, ornithine transporter) member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-124052254-2	chr8	124052130	124052330	+	728.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28757.0	NM_001029876	382038.0	Mm.334891	NM_001029876	ENSMUSG00000031976	Urb2	C77575|mKIAA0133	URB2 ribosome biogenesis 2 homolog (S. cerevisiae)	protein-coding	1.21402629108765	0.479937014622848	0.471097868509782	0.918583726640541	1.22843115597719	0.481920499082932	0.473053134461235	0.925008951780088	0.0374810693318548	0.98310615686912	1
Merged-chr15-99396007-6	chr15	99395821	99396021	+	876.1083369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001171036, intron 2 of 10)	intron (NM_001171036, intron 2 of 10)	2702.0	NM_001171035	110213.0	Mm.16769	NM_026669	ENSMUSG00000023010	Tmbim6	5031406P05Rik|Bi1|Tegt	transmembrane BAX inhibitor motif containing 6	protein-coding	1.14676703367918	1.59313540872881	1.390731840827	1.92159506093541	1.15339445755427	1.60496630705365	1.40063341731997	1.93220431685585	0.0345362989450649	0.975951122527898	0.998431161219273
Merged-chr14-60830279-4	chr14	60830171	60830371	+	986.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027436, intron 12 of 18)	MTD|LTR|ERVL-MaLR	45705.0	NR_040642	70478.0	Mm.274650	NM_027436	ENSMUSG00000021993	Mipep	5730405E07Rik|MIP	mitochondrial intermediate peptidase	protein-coding	3.49362708213613	3.83033745527295	3.29662634723236	4.01292717173404	3.38699899226087	2.79851240743093	3.50462732633978	3.62546918365249	-0.485804180215337	0.36901362948528	0.863136285888838
Merged-chr9-61057850-2	chr9	61057750	61057950	+	684.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40781.0	NR_040767	330956.0	Mm.207985	NR_040767	ENSMUSG00000111290	Gm5122	A430102L10	predicted gene 5122	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-40700130-2	chr19	40700028	40700228	+	645.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009848, intron 1 of 9)	intron (NM_009848, intron 1 of 9)	40358.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	-1.10805872493292	-1.08615278712916	-1.09733291238744	-0.570457246721105	-1.1075776593015	-1.08373000734669	-1.09480197709033	-0.936827824343503	-1.63757443811239	0.614325356149311	1
Merged-chr4-40844357-4	chr4	40844241	40844441	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022305, intron 1 of 5)	intron (NM_022305, intron 1 of 5)	5797.0	NR_039584	100628614.0		NR_039584	ENSMUSG00000096377	Mir5123	mmu-mir-5123|mu-mir-5123	microRNA 5123	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36676986-2	chr18	36676886	36677086	+	744.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001357512, exon 6 of 12)	exon (NM_001357512, exon 6 of 12)	-2229.0	NM_001360989	67843.0	Mm.273350	NM_026404	ENSMUSG00000033272	Slc35a4	2610030J16Rik	solute carrier family 35, member A4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34713169-1	chr17	34713069	34713269	+	595.5	f1_c57bl6.idr	exon (NM_031176, exon 18 of 33)	exon (NM_031176, exon 18 of 33)	30728.0	NM_009780	12268.0	Mm.477109	NM_009780	ENSMUSG00000073418	C4b	C4|Ss	complement component 4B (Chido blood group)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-47650165-2	chr6	47650099	47650299	+	932.3333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4895.0	NR_002841	19799.0		NR_002841		Rn4.5s	-	4.5S RNA	rRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-3291760-2	chr11	3291660	3291860	+	784.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001253691, exon 1 of 5)	exon (NM_001253691, exon 1 of 5)	1303.0	NM_019574	56218.0	Mm.275563	NM_019574	ENSMUSG00000020453	Patz1	8430401L15Rik|AI447519|Mazr|Patz|Zfp278	POZ (BTB) and AT hook containing zinc finger 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-84545375-3	chr4	84545289	84545489	+	954.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172870, intron 2 of 5)	CpG	129697.0	NM_172870	242509.0	Mm.190774	NM_172870	ENSMUSG00000028487	Bnc2	5031434M05Rik|8430420F16Rik	basonuclin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-114117100-4	chr7	114116999	114117199	+	921.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025846, intron 1 of 5)	CpG	682.0	NM_025846	66922.0	Mm.276572	NM_025846	ENSMUSG00000055723	Rras2	2610016H24Rik|C86394|TC21	related RAS viral (r-ras) oncogene 2	protein-coding	2.02734713651372	2.27331329817572	2.197226784125	2.65801208875701	2.81023655599071	3.05518036917382	3.40039154419878	2.77253099476823	1.45096615426777	0.0463185332027865	0.310926759436982
Merged-chr3-32333614-3	chr3	32333515	32333715	+	888.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31874.0	NR_027966	67576.0	Mm.435324	NR_027966		4930429B21Rik	-	RIKEN cDNA 4930429B21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-86502336-2	chr1	86502236	86502436	+	745.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24221.0	NR_153834	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-74572902-4	chr11	74572801	74573001	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001015046, intron 1 of 24)	intron (NM_001015046, intron 1 of 24)	17257.0	NM_001015046	380711.0	Mm.425690	NM_001015046	ENSMUSG00000038807	Rap1gap2	AU067654|Garnl4|Gm1561|mKIAA1039	RAP1 GTPase activating protein 2	protein-coding	2.05760067830868	2.07962319442915	0.870020050087472	0.852164712162696	1.04361511151278	1.57132943300028	2.28112058733819	0.855322991482716	-0.0995361690802584	0.941675361642855	0.998431161219273
Merged-chr13-117196067-2	chr13	117195967	117196167	+	812.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24506.0	NM_010330	13723.0	Mm.274926	NM_010330	ENSMUSG00000021728	Emb	AL022799|Gp70	embigin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-96173117-4	chr10	96173003	96173203	+	952.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53104.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-94370310-3	chr16	94370226	94370426	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159620)	promoter-TSS (NM_001159620)	4.0	NM_001159619	56176.0	Mm.474449	NM_019543	ENSMUSG00000022940	Pigp	Dcrc|Dscr5	phosphatidylinositol glycan anchor biosynthesis, class P	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126660090-1	chr8	126659990	126660190	+	762.0	f1_c57bl6.idr	Intergenic	Intergenic	-66654.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	-0.0568860844103869	-0.0400181662461276	0.635059576472057	0.590320864227895	0.222343925839018	-0.0387759957441282	-0.0443168619557166	-0.0490515623775016	-2.41077380207571	0.294743421400491	1
Merged-chr7-19461761-4	chr7	19461648	19461848	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB8|LINE|L1	-3254.0	NM_172279	232944.0	Mm.260504	NM_172279	ENSMUSG00000030397	Mark4	2410090P21Rik|C79806|Markl1	MAP/microtubule affinity regulating kinase 4	protein-coding	6.04788857523289	5.07931822528603	5.12254757980275	6.35092477263535	6.08637330405988	5.02296401723197	4.86552533606985	6.3330676004883	-0.0437095715428009	0.907393533382166	0.998431161219273
Merged-chr10-127664324-2	chr10	127664224	127664424	+	875.833374	f1_balb.idr|f1_c57bl6.idr	exon (NM_001122895, exon 2 of 6)	exon (NM_001122895, exon 2 of 6)	2379.0	NM_001122895	17937.0	Mm.336898	NM_008668	ENSMUSG00000025402	Nab2	AI451907	Ngfi-A binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-134249824-4	chr4	134249725	134249925	+	794.575012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-4234.0	NM_024215	68040.0	Mm.300404	NM_024215	ENSMUSG00000028840	Zfp593	3110024A21Rik|AV062409|E130106C14Rik|ZNF593	zinc finger protein 593	protein-coding	2.84486122684647	2.87121507037221	2.58377781424689	1.38568152055386	2.65957532589834	1.96086996110195	2.49397882096416	2.16648775924496	-0.417336579384117	0.636001549530058	0.982417279970648
Merged-chr8-72469067-1	chr8	72468967	72469167	+	553.0	f1_c57bl6.idr	TTS (NR_106036)	TTS (NR_106036)	1022.0	NR_106036	102465647.0		NR_106036	ENSMUSG00000099079	Mir7068	Gm27570|mmu-mir-7068	microRNA 7068	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-59424831-2	chr2	59424731	59424931	+	991.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38149.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-36831282-2	chr5	36831182	36831382	+	976.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008550)	promoter-TSS (NM_008550)	-633.0	NM_008550	17160.0	Mm.761	NM_008550	ENSMUSG00000029119	Man2b2	mKIAA0935	mannosidase 2, alpha B2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-70530305-4	chr18	70530201	70530401	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001136090)	promoter-TSS (NM_001136090)	20.0	NM_001136090	26447.0	Mm.244352	NM_011972	ENSMUSG00000038425	Poli	Rad30b	polymerase (DNA directed), iota	protein-coding	7.32366714948864	7.34697274850199	6.84940913046748	6.93938336377338	7.30506589875972	7.42286483593234	7.05952772150432	7.54389930135498	0.221520340807526	0.211186803008631	0.700323931057359
Merged-chr11-32341353-4	chr11	32341299	32341499	+	830.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-6412.0	NM_177364	268396.0	Mm.227616	NM_177364	ENSMUSG00000040711	Sh3pxd2b	G431001E03Rik|TSK4|fad49	SH3 and PX domains 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19270825-4	chr7	19270743	19270943	+	943.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009499, intron 1 of 12)	intron (NM_009499, intron 1 of 12)	1011.0	NM_001282021	22323.0	Mm.9684	NM_009499	ENSMUSG00000030403	Vasp	-	vasodilator-stimulated phosphoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-32397240-2	chr6	32397140	32397340	+	711.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175750, intron 3 of 31)	intron (NM_175750, intron 3 of 31)	-113901.0	NR_040277	319849.0	Mm.440860	NR_040277	ENSMUSG00000086763	Plxna4os1	B230378P21Rik	plexin A4, opposite strand 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-63461222-2	chr14	63461122	63461322	+	780.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177628, intron 3 of 3)	intron (NM_177628, intron 3 of 3)	24828.0	NM_177628	219148.0	Mm.37882	NM_177628	ENSMUSG00000035095	Fam167a	A030013D21	family with sequence similarity 167, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-8162003-3	chr14	8161886	8162086	+	717.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360315, intron 18 of 18)	intron (NM_001360315, intron 18 of 18)	11006.0	NM_024221	68263.0	Mm.301527	NM_024221	ENSMUSG00000021748	Pdhb	2610103L06Rik|AL024199|C81408	pyruvate dehydrogenase (lipoamide) beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-101844611-3	chr13	101844505	101844705	+	620.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-76388.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-116636156-4	chr8	116636039	116636239	+	825.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029441, intron 1 of 6)	L1MC3|LINE|L1	96852.0	NM_029441	75796.0	Mm.159575	NM_029441	ENSMUSG00000031758	Cdyl2	1700029M19Rik|4930453I21Rik|Gm20194	chromodomain protein, Y chromosome-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-76751239-2	chr13	76751147	76751347	+	829.666626	f0_c57.idr|f1_c57bl6.idr	intron (NM_030174, intron 6 of 20)	intron (NM_030174, intron 6 of 20)	366286.0	NM_030174	78771.0	Mm.316249	NM_030174	ENSMUSG00000021596	Mctp1	2810465F10Rik	multiple C2 domains, transmembrane 1	protein-coding	4.1965915563304	4.01641736670924	3.31674361613868	3.53689204472758	2.88928668187728	3.25529954170267	2.44046603747009	2.67765905687153	-1.54855418646876	0.00836218644229515	0.095734268067421
Merged-chr10-58523065-4	chr10	58522949	58523149	+	997.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162956, intron 6 of 15)	L1Md_F2|LINE|L1	25112.0	NM_001162956	76138.0	Mm.211744	NM_001162956	ENSMUSG00000038010	Ccdc138	6230424H07Rik|BC042726	coiled-coil domain containing 138	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36473457-4	chr1	36473371	36473571	+	910.7625119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033570, intron 1 of 6)	intron (NM_033570, intron 1 of 6)	1874.0	NM_033570	94220.0	Mm.422638	NM_033570	ENSMUSG00000037408	Cnnm4	5430430O18Rik|Acdp4	cyclin M4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94518358-3	chr10	94518251	94518451	+	904.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172051, intron 1 of 3)	RLTR11A2|LTR|ERVK	3494.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167656839-4	chr2	167656800	167657000	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145538, intron 1 of 5)	intron (NM_145538, intron 1 of 5)	4644.0	NM_145538	407243.0	Mm.4863	NM_145538	ENSMUSG00000090213	Tmem189	AI840826|Kua	transmembrane protein 189	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124475434-4	chr5	124475333	124475533	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030259, intron 1 of 3)	intron (NM_030259, intron 1 of 3)	2802.0	NM_030259	80291.0	Mm.425280	NM_030259	ENSMUSG00000029401	Rilpl2	-	Rab interacting lysosomal protein-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-109472329-4	chr11	109472277	109472477	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028710)	promoter-TSS (NM_028710)	852.0	NM_134038	104681.0	Mm.265874	NM_134038	ENSMUSG00000041920	Slc16a6	AW743111|ESTM12|MCT 6|MCT 7|MCT6	solute carrier family 16 (monocarboxylic acid transporters), member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-134106448-2	chr1	134106348	134106548	+	555.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4794.0	NM_001284525	71884.0	Mm.328268	NM_027979	ENSMUSG00000026450	Chit1	2300002L19Rik	chitinase 1 (chitotriosidase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111920227-3	chr12	111920134	111920334	+	670.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12179.0	NM_011625	21981.0	Mm.313076	NM_011625	ENSMUSG00000021285	Ppp1r13b	AI449786|ASPP1|AW545810|Tp53bp2|Trp53bp2|p85	protein phosphatase 1, regulatory (inhibitor) subunit 13B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-43933897-4	chr1	43933806	43934006	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310540)	promoter-TSS (NM_001310540)	-88.0	NM_001310540	22019.0	Mm.401675	NM_009418	ENSMUSG00000041763	Tpp2	TPP-2|TppII	tripeptidyl peptidase II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-3635454-2	chr8	3635354	3635554	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_011503, exon 8 of 19)	exon (NM_011503, exon 8 of 19)	4345.0	NM_011503	20911.0	Mm.7247	NM_011503	ENSMUSG00000004626	Stxbp2	C79054|Munc-18-2|Munc-18b|Munc18b|Sxtbp2|Sxtp2|Unc18-2|Unc18b|muSec1	syntaxin binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80439956-3	chr7	80439854	80440054	+	963.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	HAL1b|LINE|L1	-34518.0	NM_001081454	18550.0	Mm.5241	NM_011046	ENSMUSG00000030530	Furin	9130404I01Rik|Fur|PACE|Pcsk3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-21830117-3	chr1	21830042	21830242	+	768.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023872, intron 1 of 13)	intron (NM_023872, intron 1 of 13)	131800.0	NM_001160139	226922.0	Mm.336519	NM_023872	ENSMUSG00000028033	Kcnq5	7730402H11|9230107O05Rik|AA589396|D1Mgi1	potassium voltage-gated channel, subfamily Q, member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127345889-8	chr7	127345763	127345963	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146202)	promoter-TSS (NM_146202)	-549.0	NM_146202	233890.0	Mm.23031	NM_146202	ENSMUSG00000047371	Zfp768	BC026432|Znf768	zinc finger protein 768	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-50415531-3	chr16	50415413	50415613	+	822.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027444, intron 2 of 16)	intron (NM_027444, intron 2 of 16)	16876.0	NM_027444	70508.0	Mm.28940	NM_027444	ENSMUSG00000022641	Bbx	5530401J07Rik|5730403O13Rik	bobby sox HMG box containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-25520203-2	chr9	25520103	25520303	+	752.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 2 of 7)	MER5A|DNA|hAT-Charlie	38606.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118229807-2	chr11	118229707	118229907	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	-17065.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41383986-4	chr19	41383866	41384066	+	878.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 1 of 16)	intron (NM_031376, intron 1 of 16)	1104.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	0.140178683533957	0.381791268236148	-0.117042362771786	-0.120939951347961	0.602253585488993	-0.110853117017643	-0.115928287948982	-0.12025899443425	0.191198679254753	0.934485517893184	1
Merged-chr11-101417393-4	chr11	101417297	101417497	+	961.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144829)	promoter-TSS (NM_144829)	36.0	NM_144829	69684.0	Mm.146283	NM_144829	ENSMUSG00000075528	Aarsd1	1110069E20Rik|2310044P18Rik|AA589600|AlaX|AlaXp-II	alanyl-tRNA synthetase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-78731588-3	chr14	78731573	78731773	+	758.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081336, intron 1 of 29)	intron (NM_001081336, intron 1 of 29)	1056.0	NM_001081336	380921.0	Mm.89591	NM_001081336	ENSMUSG00000034731	Dgkh	5930402B05Rik|D130015C16|DGK	diacylglycerol kinase, eta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-66865339-2	chr10	66865239	66865439	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55045.0	NR_138560	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-97834006-2	chr15	97833906	97834106	+	980.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001204280, intron 1 of 21)	intron (NM_001204280, intron 1 of 21)	-2239.0	NM_001204276	56233.0	Mm.384027	NM_019572	ENSMUSG00000022475	Hdac7	5830434K02Rik|HD7|HD7a|Hdac7a|mFLJ00062	histone deacetylase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-100994452-4	chr3	100994355	100994555	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167906, intron 8 of 8)	intron (NM_001167906, intron 8 of 8)	-24792.0	NM_001013026	74044.0	Mm.270961	NM_001013026	ENSMUSG00000033222	Ttf2	4632434F22Rik|8030447N19|AV218430	transcription termination factor, RNA polymerase II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25759065-2	chr7	25758965	25759165	+	583.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009465, intron 19 of 19)	intron (NM_009465, intron 19 of 19)	-4306.0	NM_178089	232989.0	Mm.254223	NM_144922	ENSMUSG00000040725	Hnrnpul1	E130317O14Rik|E1B-AP5|E1BAP5|Hnrnpul|Hnrpul1	heterogeneous nuclear ribonucleoprotein U-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-94191302-4	chr8	94191211	94191411	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER20B|LTR|ERVK	12222.0	NM_013602	17748.0	Mm.192991	NM_013602	ENSMUSG00000031765	Mt1	MT-I|Mt-1	metallothionein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-80301752-4	chr11	80301805	80302005	+	828.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139228, intron 1 of 8)	intron (NM_139228, intron 1 of 8)	993.0	NM_139228	246104.0	Mm.194148	NM_139228	ENSMUSG00000017692	Rhbdl3	AI847581|Rhbdl4|Rhomr1|Vrho	rhomboid like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-93094098-4	chr5	93093967	93094167	+	968.744019	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001009818, intron 1 of 9)	CpG	651.0	NM_001347377	52398.0	Mm.394184	NM_001009818	ENSMUSG00000058013	Sept11	6230410I01Rik|AW548875|D5Ertd606e	septin 11	protein-coding	2.96330758842802	3.12268150054502	2.91638889232029	3.03117634541351	3.33296409114561	2.91899420963335	2.69626040053292	3.28949559706785	0.152026898206945	0.806712985885435	0.998431161219273
Merged-chr15-101275277-2	chr15	101275177	101275377	+	946.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_010444)	TTS (NM_010444)	8431.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-57973719-4	chr13	57973622	57973822	+	976.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB7|LINE|L1	49478.0	NR_030544	100124491.0		NR_030544	ENSMUSG00000077962	Mir874	Mirn874|mir-874|mmu-mir-874	microRNA 874	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-11336699-4	chr8	11336606	11336806	+	917.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009932, intron 3 of 47)	intron (NM_009932, intron 3 of 47)	-23880.0	NM_009931	12826.0	Mm.738	NM_009931	ENSMUSG00000031502	Col4a1	Bru|Col4a-1|Raw|Svc	collagen, type IV, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-45734551-2	chr17	45734451	45734651	+	761.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028164)	promoter-TSS (NM_028164)	45.0	NR_152153	433111.0	Mm.213441	NR_152153	ENSMUSG00000097727	F630040K05Rik	-	RIKEN cDNA F630040K05 gene	ncRNA	-1.56355737717652	-1.81244775989375	-1.82128546162293	-1.82854501295842	-1.83962066705452	-1.81053259306168	-1.81928479966835	-1.82724555674025	-1.28500227969968	0.715751224811686	1
Merged-chr9-47617774-2	chr9	47617607	47617807	+	620.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	ID4|SINE|ID	87355.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-68369919-3	chr7	68369798	68369998	+	592.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47526.0	NR_046208	71244.0	Mm.410787	NR_046208	ENSMUSG00000108924	4933436H12Rik	-	RIKEN cDNA 4933436H12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-111655465-4	chr13	111655377	111655577	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30701.0	NM_172593	218613.0	Mm.31012	NM_172593	ENSMUSG00000032727	Mier3	5730509D14|AU015422|D130064H19Rik	MIER family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-18038389-3	chr5	18038258	18038458	+	746.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	75788.0	NM_001081143	242851.0	Mm.332230	NM_001081143	ENSMUSG00000028777	Gnat3	Ggust|Gtn	guanine nucleotide binding protein, alpha transducing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-130691954-2	chr3	130691854	130692054	+	940.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17490.0	NM_025509	66357.0	Mm.300697	NM_025509	ENSMUSG00000041084	Ostc	2310008M10Rik|5730557H03Rik	oligosaccharyltransferase complex subunit (non-catalytic)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94463600-2	chr10	94463500	94463700	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 2 of 4)	MER58B|DNA|hAT-Charlie	-51257.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34958201-3	chr17	34958094	34958294	+	648.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010478, exon 1 of 1)	exon (NM_010478, exon 1 of 1)	1044.0	NM_010478	15511.0	Mm.372314	NM_010478	ENSMUSG00000090877	Hspa1b	Hsp70|Hsp70-1|Hsp70.1|hsp68	heat shock protein 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-63967756-3	chr14	63967645	63967845	+	601.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20035.0	NM_026359	67750.0	Mm.33864	NM_026359	ENSMUSG00000021961	4930578I06Rik	AI429111	RIKEN cDNA 4930578I06 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-107609819-4	chr7	107609710	107609910	+	943.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163557, intron 1 of 25)	intron (NM_001163557, intron 1 of 25)	2966.0	NM_001163557	19024.0	Mm.2817	NM_008905	ENSMUSG00000036528	Ppfibp2	Cclp1	PTPRF interacting protein, binding protein 2 (liprin beta 2)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128699449-3	chr2	128699394	128699594	+	810.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 1 of 18)	intron (NM_008587, intron 1 of 18)	579.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-109193963-4	chr8	109193842	109194042	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_126329, intron 5 of 9)	intron (NR_126329, intron 5 of 9)	55803.0	NR_151498	105243282.0	Mm.203332	NR_151498		4922502B01Rik	2900056M07Rik	RIKEN cDNA 4922502B01 gene	ncRNA	3.41793179208374	4.39623871269421	3.85461653808004	4.33265886951748	3.88222980548413	2.20440693555675	3.73816793836246	3.83363196084895	-0.677519757056169	0.223386250968183	0.714791840691861
Merged-chr11-69325805-4	chr11	69325695	69325895	+	976.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010599)	promoter-TSS (NM_010599)	-463.0	NM_010599	16499.0	Mm.232472	NM_010599	ENSMUSG00000018470	Kcnab3	C330022D06Rik|Kcnab4|mKv(beta)4	potassium voltage-gated channel, shaker-related subfamily, beta member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-28064291-2	chr5	28064186	28064386	+	711.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7126.0	NM_153526	231070.0	Mm.30221	NM_153526	ENSMUSG00000045294	Insig1	1810013C12Rik|Insig-1	insulin induced gene 1	protein-coding	-0.0867962211900293	-0.0709413263455831	0.493072145914521	0.550152230644645	-0.0858058974030946	-0.0697711128376215	0.258269642431396	-0.0794406554421649	-2.04702199231539	0.379969190673806	1
Merged-chr2-30127790-2	chr2	30127690	30127890	+	764.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-3179.0	NM_001290503	227693.0	Mm.44526	NM_178694	ENSMUSG00000039686	Zer1	C230075L19Rik|Zyg11bl	zyg-11 related, cell cycle regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125600342-4	chr6	125600243	125600443	+	754.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011708, intron 12 of 51)	intron (NM_011708, intron 12 of 51)	47395.0	NM_011708	22371.0	Mm.22339	NM_011708	ENSMUSG00000001930	Vwf	6820430P06Rik|AI551257|B130011O06Rik|C630030D09|F8VWF|VWD	Von Willebrand factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-56659028-4	chr16	56658921	56659121	+	997.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001014399, intron 16 of 27)	intron (NM_001014399, intron 16 of 27)	58429.0	NM_001357124	21787.0	Mm.425970	NM_019678	ENSMUSG00000022757	Tfg	AI173908	Trk-fused gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-56531806-2	chr19	56531706	56531906	+	820.666626	f1_balb.idr|f1_c57bl6.idr	intron (NR_153440, intron 8 of 9)	intron (NR_153440, intron 8 of 9)	16316.0	NM_001360437	55947.0	Mm.2805	NM_018831	ENSMUSG00000025077	Dclre1a	2810043H12Rik|AU022226|Pso2|Smn1a|Snm1|mKIAA0086	DNA cross-link repair 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-74981606-4	chr11	74981436	74981636	+	899.479126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001002764, intron 8 of 18)	intron (NM_001002764, intron 8 of 18)	55664.0	NM_001002764	103677.0	Mm.288460	NM_001002764	ENSMUSG00000038290	Smg6	AI317223|AU041178	Smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-103375750-3	chr14	103375643	103375843	+	701.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-28943.0	NM_207215	105689.0	Mm.6478	NM_207215	ENSMUSG00000033004	Mycbp2	AU023734|AW107953|AW546647|C130061D10Rik|Pam|Phr1|R75243	MYC binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120359518-2	chr11	120359418	120359618	+	777.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2016.0	NM_172802	238021.0	Mm.481403	NM_172802	ENSMUSG00000025380	Fscn2	A930022G03|Ahl8|C630046B20Rik	fascin actin-bundling protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98361443-4	chr11	98361341	98361541	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021547, intron 1 of 14)	intron (NM_021547, intron 1 of 14)	3073.0	NM_021547	59045.0	Mm.265546	NM_021547	ENSMUSG00000018167	Stard3	Mln64|es64	START domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-64829896-3	chr9	64829796	64829996	+	893.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162917, intron 2 of 34)	URR1B|DNA|hAT-Charlie	18885.0	NM_001162917	102442.0	Mm.222473	NM_176935	ENSMUSG00000053641	Dennd4a	AI115600|AI851943|F730015K02Rik	DENN/MADD domain containing 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-72287575-2	chr4	72287475	72287675	+	855.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F|LINE|L1	86331.0	NR_027923	68285.0	Mm.37541	NR_027923		C630043F03Rik	AI851307	RIKEN cDNA C630043F03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-192078636-4	chr1	192078559	192078759	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011633, intron 1 of 9)	intron (NM_011633, intron 1 of 9)	13940.0	NM_011633	22033.0	Mm.380491	NM_011633		Traf5	-	TNF receptor-associated factor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-123366910-2	chr7	123366810	123367010	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001316713, intron 1 of 19)	intron (NM_001316713, intron 1 of 19)	3005.0	NM_001122643	70497.0	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28763822-2	chr7	28763744	28763944	+	815.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001306222, intron 1 of 5)	B3|SINE|B2	2800.0	NM_001306222	18036.0	Mm.220333	NM_010908	ENSMUSG00000030595	Nfkbib	I(Kappa)B(beta)|I-kappa-B-beta|IKB-beta|IKappaBbeta|IkB|IkBb|NF-kappa-BIB|ikB-B	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, beta	protein-coding	-0.23808537180472	0.397785615059311	0.347685684039707	-0.231923272948831	-0.237168280415276	-0.0219361797764525	-0.227154673692081	-0.231275196582774	-2.85738674580931	0.232559505748573	1
Merged-chr7-12919826-2	chr7	12919726	12919926	+	568.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	-2485.0	NM_009095	20103.0	Mm.5291	NM_009095	ENSMUSG00000012848	Rps5	AA617411	ribosomal protein S5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-75210815-4	chr1	75210707	75210907	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011494)	promoter-TSS (NM_011494)	-22.0	NR_102731	20872.0	Mm.1155	NM_011494	ENSMUSG00000026201	Stk16	EDPK|Krct|MPSK|PKL12|TSF-1	serine/threonine kinase 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-59052218-4	chr19	59052112	59052312	+	981.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114312, intron 2 of 16)	intron (NM_001114312, intron 2 of 16)	23857.0	NM_175172	71653.0	Mm.37338	NM_175172	ENSMUSG00000041362	Shtn1	4930506M07Rik|Shootin1|mKIAA1598	shootin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-98031456-4	chr13	98031350	98031550	+	884.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012026, intron 7 of 35)	intron (NM_012026, intron 7 of 35)	174715.0	NM_012026	110596.0	Mm.252718	NM_012026	ENSMUSG00000021662	Arhgef28	9230110L08Rik|AI323540|D13Bwg1089e|RIP2|Rgnef|RhoGEF|Rhoip2|p190RhoGEF	Rho guanine nucleotide exchange factor (GEF) 28	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-28518883-2	chr16	28518817	28519017	+	797.5	f0_balb.idr|f1_balb.idr	intron (NM_010199, intron 2 of 5)	L1MC4a|LINE|L1	45578.0	NM_001357064	14167.0	Mm.7996	NM_010199	ENSMUSG00000022523	Fgf12	AV114868|B230343J05Rik|FGF-12|FHF-1|Fhf1	fibroblast growth factor 12	protein-coding	1.09553623148259	1.82169642701937	2.43117757676147	1.13106997155967	1.88450756091961	2.24367347085066	2.16482783264159	1.98365344989362	0.828899701580121	0.453838456118106	0.919120493489568
Merged-chr17-85090221-3	chr17	85090125	85090325	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163624)	promoter-TSS (NM_001163624)	42.0	NM_145984	213760.0	Mm.259035	NM_145984	ENSMUSG00000024127	Prepl	2810457N15Rik|9530014L06Rik|D030028O16Rik|mKIAA0436	prolyl endopeptidase-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-78452496-4	chr16	78452406	78452606	+	898.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-75325.0	NM_001297747	12228.0	Mm.392910	NM_009770	ENSMUSG00000022863	Btg3	ANA|tob5	B cell translocation gene 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-80320101-4	chr12	80320004	80320204	+	931.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59723.0	NM_001346669	109711.0	Mm.253564	NM_134156	ENSMUSG00000015143	Actn1	3110023F10Rik|Actn1a	actinin, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91489443-1	chr16	91489343	91489543	+	546.0	f1_balb.idr	intron (NM_010508, intron 1 of 10)	Lx9|LINE|L1	4228.0	NM_010508	15975.0	Mm.502	NM_010508	ENSMUSG00000022967	Ifnar1	Ifar|Ifnar|Ifrc|Infar	interferon (alpha and beta) receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-32240276-4	chr18	32240171	32240371	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133658)	promoter-TSS (NM_133658)	-60.0	NM_133658	13872.0	Mm.282335	NM_133658	ENSMUSG00000024382	Ercc3	BTF2 p89|Ercc-3|XPB	excision repair cross-complementing rodent repair deficiency, complementation group 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-133120195-2	chr1	133120055	133120255	+	621.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11011.0	NM_133819	108954.0	Mm.293628	NM_133819	ENSMUSG00000046062	Ppp1r15b	1810033K10Rik|AI606441|C530022L24Rik|CReP	protein phosphatase 1, regulatory (inhibitor) subunit 15b	protein-coding	-0.637164521402753	-0.00107041937844576	-0.629648525983824	-0.198839237686859	-0.636466887126851	-0.625159782951639	-0.628840665121009	-0.631980662164451	-3.34733352433029	0.231753354118799	1
Merged-chr18-82635679-4	chr18	82635587	82635787	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177832, intron 13 of 29)	RLTR22_Mur|LTR|ERVK	57047.0	NM_177832	329002.0	Mm.34438	NM_177832	ENSMUSG00000041258	Zfp236	AI447957|Gm335	zinc finger protein 236	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-57172385-3	chr17	57172235	57172435	+	857.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	21846.0	NM_019418	50930.0	Mm.483369	NM_019418	ENSMUSG00000005824	Tnfsf14	HVEM-L|HVEML|LIGHT|LTg|Ly113|Tnlg1d	tumor necrosis factor (ligand) superfamily, member 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85279140-2	chr12	85279040	85279240	+	706.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_025421, intron 2 of 2)	L1MB3|LINE|L1	1295.0	NM_025421	66204.0	Mm.311985	NM_025421	ENSMUSG00000008822	Acyp1	1110039O14Rik|AI325944	acylphosphatase 1, erythrocyte (common) type	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-13951561-2	chr19	13951461	13951661	+	690.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	32539.0	NM_001011850	258151.0	Mm.377361	NM_001011850	ENSMUSG00000062314	Olfr1505	MOR211-4P	olfactory receptor 1505	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-57784848-4	chr10	57784745	57784945	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021272)	promoter-TSS (NM_021272)	-78.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-30304522-4	chr6	30304393	30304593	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001169576)	promoter-TSS (NM_001169576)	46.0	NM_009459	22214.0	Mm.332967	NM_009459	ENSMUSG00000039159	Ube2h	1500009C23Rik|AI181839|AI326965|AI462483|AW227540|E2-20K|Gid3|N28148|Ubc8	ubiquitin-conjugating enzyme E2H	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140140711-2	chr5	140140611	140140811	+	754.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359027, intron 1 of 6)	intron (NM_001359027, intron 1 of 6)	34207.0	NM_001359027	17120.0	Mm.27250	NM_010752	ENSMUSG00000029554	Mad1l1	AI173502|AW550425|Mad1	MAD1 mitotic arrest deficient 1-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-122564689-4	chr10	122564582	122564782	+	985.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_040616)	TTS (NR_040616)	5209.0	NR_040616	319272.0	Mm.411763	NR_040616	ENSMUSG00000112095	A130077B15Rik	-	RIKEN cDNA A130077B15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-81697214-2	chr18	81697114	81697314	+	734.625	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	294866.0	NR_039589	100628596.0		NR_039589	ENSMUSG00000093036	Mir5127	mmu-mir-5127|mu-mir-5127	microRNA 5127	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-61301502-3	chr14	61301404	61301604	+	890.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033788, intron 1 of 2)	RMER4B|LTR|ERVK	3830.0	NR_033788	67355.0	Mm.193728	NR_033788	ENSMUSG00000101505	1700109G14Rik	1700126G13Rik	RIKEN cDNA 1700109G14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-39458950-4	chr18	39458854	39459054	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008173, intron 1 of 7)	intron (NM_008173, intron 1 of 7)	28291.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0.71304705074416	0.46850385967538	0.915437791246222	1.17246257062102	0.720018931744538	0.666515774692041	0.794574748637621	0.456152608225311	-1.06780697947162	0.506284017749896	1
Merged-chr13-20379760-3	chr13	20379659	20379859	+	941.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 15 of 21)	intron (NM_080288, intron 15 of 21)	-93231.0	NM_198093	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-47445093-3	chr14	47444973	47445173	+	834.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-26666.0	NM_144553	218977.0	Mm.240543	NM_144553	ENSMUSG00000037544	Dlgap5	C77459|C86398|Dap-5|Dlg7|Hurp|mKIAA0008	DLG associated protein 5	protein-coding	-1.50561175621786	-1.47331375025452	-1.02203377115094	-1.49110398925286	-1.50334449591826	-1.47119716082604	-1.48086985756939	-1.48966786617048	-2.07776723614574	0.550394407909386	1
Merged-chr6-98092373-4	chr6	98092268	98092468	+	998.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	100585.0	NM_008601	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-125063006-2	chr4	125062906	125063106	+	947.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_175223, intron 3 of 5)	B1_Mur1|SINE|Alu	2651.0	NM_175223	75563.0	Mm.50304	NM_175223	ENSMUSG00000042707	Dnali1	1700023A09Rik|AW049135	dynein, axonemal, light intermediate polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-31943480-1	chr12	31943380	31943580	+	692.0	f1_balb.idr	intron (NM_177993, intron 2 of 8)	B4A|SINE|B4	6765.0	NM_177993	73389.0	Mm.390461	NM_153198	ENSMUSG00000002996	Hbp1	1700058O05Rik|BE629963|C330012F01Rik|C86454	high mobility group box transcription factor 1	protein-coding	-0.625401694527529	-0.614006008873412	-0.617738623493398	-0.184999825743672	-0.624690164486199	0.0245676813204893	-0.616915294059375	-0.620115780703871	0.74520671280359	0.79430488475894	1
Merged-chr4-86580232-4	chr4	86580120	86580320	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_173400, exon 17 of 17)	3' UTR (NM_173400, exon 17 of 17)	4547.0	NM_178376	68441.0	Mm.31178	NM_178376	ENSMUSG00000070934	Rraga	1300010C19Rik|AI255374|FIP-1|RAGA	Ras-related GTP binding A	protein-coding	4.84434742394268	4.4345726826367	5.65329637842563	5.20261289745103	4.77792044018074	5.17669028489039	5.6406758517232	5.22568913254813	0.147946170994301	0.670690360353214	0.99359666617512
Merged-chr13-99187672-4	chr13	99187562	99187762	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004149, intron 1 of 4)	intron (NM_001004149, intron 1 of 4)	2839.0	NM_001004149	238803.0	Mm.343207	NM_001004149	ENSMUSG00000050919	Zfp366	DC-SCRIPT|Znf366	zinc finger protein 366	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3981537-4	chr12	3981446	3981646	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001082483, intron 10 of 22)	intron (NM_001082483, intron 10 of 22)	26601.0	NM_001278583	18976.0	Mm.277996	NM_008895	ENSMUSG00000020660	Pomc	ACTH|BE|Beta-LPH|Clip|Gamma-LPH|Npp|Pomc-1|Pomc1|alpha-MSH|alphaMSH|beta-MSH|gamma-MSH	pro-opiomelanocortin-alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135563505-1	chr5	135563405	135563605	+	657.0	f1_balb.idr	promoter-TSS (NM_001013412)	promoter-TSS (NM_001013412)	64.0	NM_001013412	541307.0	Mm.376459	NM_001013412	ENSMUSG00000070464	Ccl26	Ccl26l	chemokine (C-C motif) ligand 26	protein-coding	0.78202473211079	1.21646964969503	0.808549338733	1.27885214039901	1.43064009601723	1.22558142514076	1.75917689724254	1.28583825742943	1.73589049079596	0.200556423200672	0.68430295213727
Merged-chr5-122422339-6	chr5	122422253	122422453	+	917.0972289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019805)	promoter-TSS (NM_019805)	-91.0	NM_019805	56317.0	Mm.37341	NM_019805	ENSMUSG00000029466	Anapc7	APC7|AW545589	anaphase promoting complex subunit 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-15397011-2	chr17	15396911	15397111	+	858.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357822, intron 1 of 10)	intron (NM_001357822, intron 1 of 10)	765.0	NM_024203	67544.0	Mm.35039	NM_024203	ENSMUSG00000014763	Fam120b	4932442K08Rik|AW049283|AW413338|CCPG|Pgcc1|mKIAA1838	family with sequence similarity 120, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-21678641-2	chr14	21678541	21678741	+	827.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013826, intron 3 of 3)	intron (NM_001013826, intron 3 of 3)	35935.0	NM_001013826	435391.0	Mm.295860	NM_001013826	ENSMUSG00000063821	Dupd1	EG435391	dual specificity phosphatase and pro isomerase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78323940-2	chr15	78323837	78324037	+	855.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1863.0	NM_001358854	12983.0	Mm.235324	NM_007780	ENSMUSG00000071713	Csf2rb	AI848964|AIC2B|Bc|CDw131|Csf2rb1|Csfgmrb|Il3r|Il3rb|Il3rb1|Il5rb	colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage)	protein-coding	-1.50811478453619	-0.99851579554048	-1.48484165847197	-1.49312904261012	-1.50577282675516	-1.47256636097272	-1.48255773576353	-1.49164560481169	-2.24133836997777	0.518237887813808	1
Merged-chr7-31053183-1	chr7	31053083	31053283	+	762.25	f0_balb.idr	intron (NM_194321, intron 4 of 7)	G-rich|Low_complexity|Low_complexity	1670.0	NM_052991	56188.0	Mm.1491	NM_019503	ENSMUSG00000036570	Fxyd1	0610012C17Rik|1110006M24Rik|Plm|Pml	FXYD domain-containing ion transport regulator 1	protein-coding	1.22793947213882	0.958856585467673	1.16881575542307	0.751670169738151	0.966604763731562	0.966944964933099	0.592278420725057	0.584880677242218	-1.33030940674259	0.383987297940422	1
Merged-chr9-61671242-4	chr9	61671143	61671343	+	966.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	243267.0	NM_018853	56040.0	Mm.3158	NM_018853	ENSMUSG00000007892	Rplp1	2410042H16Rik|Arpp1|C430017H15Rik	ribosomal protein, large, P1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-14500540-4	chr9	14500452	14500652	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023153)	promoter-TSS (NM_023153)	-67.0	NM_023153	66070.0	Mm.245938	NM_023153	ENSMUSG00000004096	Cwc15	0610040D20Rik|2900052N06Rik|Ed1|c11orf5|mED1	CWC15 spliceosome-associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-10481133-8	chr10	10481054	10481254	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR44B|LTR|ERVK	-8840.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70314020-2	chr11	70313920	70314120	+	703.375	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	8510.0	NM_145684	11685.0	Mm.274093	NM_145684	ENSMUSG00000018907	Alox12e	12-LOX|8-LOX|AW259591|Alox12-ps1|Alox12-ps2|Aloxe|e-LOX1	arachidonate lipoxygenase, epidermal	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-27021733-3	chr18	27021621	27021821	+	778.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1267564.0	NM_001362334	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-68053793-2	chr3	68053693	68053893	+	688.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113419, intron 3 of 10)	intron (NM_001113419, intron 3 of 10)	-11009.0	NM_001113420	30953.0	Mm.331064	NM_013928	ENSMUSG00000027777	Schip1	Nf2ip|Schip-1	schwannomin interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-11434876-2	chr2	11434776	11434976	+	727.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36376.0	NR_040615	77543.0	Mm.490670	NR_040615	ENSMUSG00000102674	8030442B05Rik	-	RIKEN cDNA 8030442B05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135911461-2	chr5	135911361	135911561	+	636.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_018871, exon 2 of 2)	exon (NM_018871, exon 2 of 2)	23180.0	NM_018871	22628.0	Mm.233813	NM_018871	ENSMUSG00000051391	Ywhag	14-3-3gamma|D7Bwg1348e	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-81054275-4	chr3	81054173	81054373	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019971, intron 1 of 5)	intron (NM_019971, intron 1 of 5)	17857.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117848744-3	chr10	117848647	117848847	+	896.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2773.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-146662247-2	chr3	146662146	146662346	+	595.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10929.0	NM_029144	75015.0	Mm.250432	NM_029144	ENSMUSG00000048652	4930503B20Rik	1700013A07Rik|1700095G21Rik|4930483N21Rik|Gm1652|Samd13	RIKEN cDNA 4930503B20 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-31292666-2	chr16	31292566	31292766	+	774.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17389.0	NM_025800	66849.0	Mm.291593	NM_025800	ENSMUSG00000047714	Ppp1r2	0610025N14Rik|2310007G06Rik|4930440J04Rik|5430408E15Rik|D16Ertd248e|I-2|IPP-2	protein phosphatase 1, regulatory (inhibitor) subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32982888-4	chr2	32982753	32982953	+	833.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019488)	promoter-TSS (NM_019488)	-770.0	NR_151460	56017.0	Mm.305754	NM_019488	ENSMUSG00000026791	Slc2a8	D2Ertd44e|GLUT8|GlutX1	solute carrier family 2, (facilitated glucose transporter), member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80995385-4	chr10	80995255	80995455	+	931.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038655, intron 2 of 3)	intron (NM_001038655, intron 2 of 3)	6010.0	NM_001038655	14708.0	Mm.222496	NM_010319	ENSMUSG00000048240	Gng7	AI840417	guanine nucleotide binding protein (G protein), gamma 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-25119891-2	chr19	25119791	25119991	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028785, intron 15 of 47)	intron (NM_028785, intron 15 of 47)	-117084.0	NM_181404	107351.0	Mm.260722	NM_181404	ENSMUSG00000032702	Kank1	A930031B09Rik|AU015049|AW121052|Ankrd15|D330024H06Rik|mKIAA0172	KN motif and ankyrin repeat domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27771264-2	chr2	27771164	27771364	+	548.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER12C|LTR|ERVK	60681.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-43501469-3	chr1	43501391	43501591	+	933.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010879, intron 1 of 4)	ORR1F|LTR|ERVL-MaLR	55740.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-173973392-3	chr1	173973308	173973508	+	899.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008327, intron 3 of 6)	intron (NM_008327, intron 3 of 6)	9436.0	NM_008327	26388.0	Mm.218770	NM_008327	ENSMUSG00000026535	Ifi202b	Ifbip-1|Ifi202|Ifi202a|p202	interferon activated gene 202B	protein-coding	-2.18233058068552	-2.15536956715525	-2.16352280018114	-2.04193253143548	-2.18043796738662	-2.15360272754651	-2.16167708693786	-2.16902129354933	-0.683654500252594	0.846597994014493	1
Merged-chr11-114899954-2	chr11	114899854	114900054	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_170758, intron 6 of 6)	intron (NM_170758, intron 6 of 6)	9913.0	NM_170758	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-34344286-5	chr13	34344171	34344371	+	723.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001033167, exon 1 of 11)	exon (NM_001033167, exon 1 of 11)	911.0	NM_001033167	73102.0	Mm.23932	NM_001033167	ENSMUSG00000038267	Slc22a23	3110004L20Rik	solute carrier family 22, member 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-134494272-6	chr5	134494108	134494308	+	924.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039162, intron 13 of 15)	intron (NM_001039162, intron 13 of 15)	-37492.0	NM_001081464	57080.0	Mm.332735	NM_020331	ENSMUSG00000023079	Gtf2ird1	1700012P16Rik|BEN|Cream1|ESTM9|GTF3|Gtf2il|MusTRD1|Tg(Alb1-Myc)166.8Sst|WBSCR11|X83320	general transcription factor II I repeat domain-containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80223507-1	chr7	80223407	80223607	+	556.0	f1_c57bl6.idr	intron (NM_001360135, intron 12 of 13)	intron (NM_001360135, intron 12 of 13)	9298.0	NM_001291276	23991.0	Mm.30217	NM_011870	ENSMUSG00000030538	Cib1	Cibkip|Kip|Prkdcip	calcium and integrin binding 1 (calmyrin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-34195826-4	chr7	34195703	34195903	+	840.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026549, intron 3 of 6)	B2_Mm2|SINE|B2	867.0	NM_026549	68079.0	Mm.38173	NM_026549	ENSMUSG00000002635	Pdcd2l	6030457N17Rik	programmed cell death 2-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-58478551-2	chr16	58478451	58478651	+	814.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357433, intron 6 of 10)	intron (NM_001357433, intron 6 of 10)	44875.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-85305578-1	chr1	85305478	85305678	+	647.0	f1_balb.idr	Intergenic	Intergenic	-35012.0	NM_001037909	620078.0	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik	RIKEN cDNA C130026I21 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-87765444-2	chr3	87765344	87765544	+	607.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_152799, intron 1 of 24)	intron (NM_152799, intron 1 of 24)	3509.0	NM_001289600	73182.0	Mm.158962	NM_028460	ENSMUSG00000028073	Pear1	3110045G13Rik|Jedi-1|Megf12	platelet endothelial aggregation receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-6818428-2	chr2	6818328	6818528	+	944.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110232, intron 3 of 15)	intron (NM_001110232, intron 3 of 15)	53607.0	NM_001347094	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-72224641-4	chr5	72224562	72224762	+	954.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_003966, intron 1 of 22)	intron (NR_003966, intron 1 of 22)	21319.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-15889683-1	chr16	15889583	15889783	+	546.0	f0_c57.idr	TTS (NM_007679)	TTS (NM_007679)	2397.0	NM_007679	12609.0	Mm.347407	NM_007679	ENSMUSG00000071637	Cebpd	c/EBPdelta	CCAAT/enhancer binding protein (C/EBP), delta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127608588-2	chr10	127608563	127608763	+	664.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 3 of 88)	intron (NM_008512, intron 3 of 88)	12485.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-51862279-4	chr7	51862168	51862368	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001115087)	promoter-TSS (NM_001115087)	-1.0	NM_001115087	100040608.0	Mm.322643	NM_001115087	ENSMUSG00000092118	Fancf	A730016A17	Fanconi anemia, complementation group F	protein-coding	5.76473633498582	5.57649165783667	5.15199943337721	5.97177866476193	5.37574010322749	5.41704464679605	5.51100614523776	5.3372529138204	-0.276097185922095	0.318768438694277	0.821951596143819
Merged-chr12-83520414-4	chr12	83520329	83520529	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030246)	promoter-TSS (NM_030246)	-37.0	NM_030246	73828.0	Mm.38238	NM_030246	ENSMUSG00000021222	Dcaf4	1110018E21Rik|Wdr21	DDB1 and CUL4 associated factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-35747560-2	chr16	35747460	35747660	+	800.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153550, intron 2 of 8)	L1MC4a|LINE|L1	21796.0	NM_153550	224132.0	Mm.24094	NM_153550	ENSMUSG00000022848	Dirc2	RCC4	disrupted in renal carcinoma 2 (human)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-16213284-1	chr16	16213184	16213384	+	545.0	f1_c57bl6.idr	promoter-TSS (NM_026163)	promoter-TSS (NM_026163)	-61.0	NM_026163	67451.0	Mm.2252	NM_026163	ENSMUSG00000041957	Pkp2	1200008D14Rik|1200012P04Rik|AA516617|Pkp2l	plakophilin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-116899740-2	chr2	116899640	116899840	+	735.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040335)	promoter-TSS (NR_040335)	-412.0	NR_040336	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-37833716-4	chr13	37833603	37833803	+	982.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039188, intron 1 of 9)	intron (NM_001039188, intron 1 of 9)	6310.0	NM_001039188	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-102407556-4	chr11	102407460	102407660	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026542)	promoter-TSS (NM_026542)	-43.0	NM_026542	68066.0	Mm.44226	NM_026542	ENSMUSG00000018677	Slc25a39	3010027G13Rik|D11Ertd333e	solute carrier family 25, member 39	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132158423-4	chr4	132158319	132158519	+	883.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13933.0	NM_013622	18386.0	Mm.5243	NM_013622	ENSMUSG00000050511	Oprd1	DOR|DOR-1|Nbor|mDOR	opioid receptor, delta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-94470936-3	chr2	94470860	94471060	+	721.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32774.0	NM_001349003	11800.0	Mm.181824	NM_007466	ENSMUSG00000027193	Api5	AAC-11|AI196452|API-5	apoptosis inhibitor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-184845924-4	chr1	184845807	184846007	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133684)	promoter-TSS (NM_133684)	-60.0	NM_133684	67247.0	Mm.177724	NM_133684	ENSMUSG00000073481	Marc2	2810484M10Rik|Mosc2|mARC1	mitochondrial amidoxime reducing component 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135169931-2	chr5	135169831	135170031	+	681.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009745, intron 1 of 5)	intron (NM_009745, intron 1 of 5)	1559.0	NM_009745	12054.0	Mm.405834	NM_009745	ENSMUSG00000029681	Bcl7b	-	B cell CLL/lymphoma 7B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-6376580-2	chr11	6376480	6376680	+	986.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18545.0	NM_001005867	52915.0	Mm.1144	NM_028601	ENSMUSG00000041164	Zmiz2	Zimp7	zinc finger, MIZ-type containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141552608-4	chr4	141552491	141552691	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6429.0	NR_030695	320456.0	Mm.32859	NM_177163		B330016D10Rik	-	RIKEN cDNA B330016D10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-96977821-4	chr11	96977728	96977928	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080964)	promoter-TSS (NM_001080964)	-140.0	NM_001080964	78912.0	Mm.491183	NM_030220	ENSMUSG00000018678	Sp2	4930480I16Rik|mKIAA0048	Sp2 transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-25255438-4	chr2	25255335	25255535	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252541)	promoter-TSS (NM_001252541)	-4.0	NM_177344	227615.0	Mm.213925	NM_177344	ENSMUSG00000078201	Tmem203	C730025P13Rik|Hbebp1	transmembrane protein 203	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-116063262-4	chr9	116063178	116063378	+	916.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028638, intron 14 of 14)	ORR1E|LTR|ERVL-MaLR	112085.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67222523-2	chr10	67222423	67222623	+	580.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_207221, intron 8 of 25)	intron (NM_207221, intron 8 of 25)	36773.0	NM_001242396	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-115668245-4	chr6	115668122	115668322	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029780, intron 1 of 16)	ORR1E|LTR|ERVL-MaLR	7666.0	NM_001356334	110157.0	Mm.184163	NM_029780	ENSMUSG00000000441	Raf1	6430402F14Rik|AA990557|BB129353|Craf1|D830050J10Rik|Raf-1|c-Raf|cRaf|v-Raf	v-raf-leukemia viral oncogene 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-93309785-4	chr10	93309700	93309900	+	986.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001322265, intron 1 of 4)	intron (NM_001322265, intron 1 of 4)	1359.0	NM_001322268	13713.0	Mm.4454	NM_013508	ENSMUSG00000008398	Elk3	D430049E23Rik|Erp|Etrp|Net|Sap-2	ELK3, member of ETS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-73574049-12	chr18	73574027	73574227	+	945.569458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039214, intron 1 of 1)	intron (NM_001039214, intron 1 of 1)	1422.0	NM_001039214	240396.0	Mm.24131	NM_001039214	ENSMUSG00000037253	Mex3c	A130001D14Rik|BC035207|BM-013|Rkhd2	mex3 RNA binding family member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-52097765-4	chr12	52097670	52097870	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029760)	promoter-TSS (NM_029760)	24.0	NM_029760	76826.0	Mm.244781	NM_029760	ENSMUSG00000035142	Nubpl	2410170E07Rik	nucleotide binding protein-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10304989-4	chr19	10304896	10305096	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198114)	promoter-TSS (NM_198114)	-119.0	NM_198114	269060.0	Mm.329718	NM_198114	ENSMUSG00000035735	Dagla	Nsddr	diacylglycerol lipase, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-174440052-4	chr2	174439916	174440116	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022325)	promoter-TSS (NM_022325)	-977.0	NM_022325	64138.0	Mm.156919	NM_022325	ENSMUSG00000016256	Ctsz	AI787083|AU019819|CTSX|D2Wsu143e	cathepsin Z	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-123254792-3	chr8	123254691	123254891	+	789.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310661)	promoter-TSS (NM_001310661)	-569.0	NM_028200	72325.0	Mm.276193	NM_028200	ENSMUSG00000001062	Vps9d1	1300018I17Rik|2410004N05Rik|5DOS1|Vsp9d1	VPS9 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-88540001-2	chr4	88539901	88540101	+	754.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3C|LINE|L1	-17207.0	NM_010510	15977.0	Mm.1245	NM_010510	ENSMUSG00000048806	Ifnb1	IFN-beta|IFNB|Ifb	interferon beta 1, fibroblast	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-17895592-4	chr17	17895493	17895693	+	942.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7769.0	NM_008039	14289.0	Mm.378918	NM_008039	ENSMUSG00000052270	Fpr2	E330010I07Rik|Fpr-rs2	formyl peptide receptor 2	protein-coding	4.15883326511563	4.10526176243989	4.43199310892336	3.63778412651656	4.32053977984543	4.60172955554087	3.68837834740251	4.01194996201685	0.114415962082088	0.796341617374949	0.998431161219273
Merged-chr13-113636108-4	chr13	113636025	113636225	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17561.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-3185115-4	chr11	3185016	3185216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030207, intron 4 of 32)	intron (NM_030207, intron 4 of 32)	8347.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-59889442-4	chr2	59889346	59889546	+	790.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB7|LINE|L1	-6840.0	NM_028118	72137.0	Mm.288734	NM_028118	ENSMUSG00000026988	Wdsub1	1700048E19Rik|2610014F08Rik	WD repeat, SAM and U-box domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-72587683-1	chr8	72587583	72587783	+	617.0	f1_c57bl6.idr	TTS (NM_001357278)	TTS (NM_001357278)	15860.0	NM_001357279	74166.0	Mm.212927	NM_144534	ENSMUSG00000031791	Tmem38a	1110001E17Rik|AI413399|SPR-27|TRIC-A|mg33a	transmembrane protein 38A	protein-coding	2.8115041731022	1.45197668279844	3.18365866806494	2.01852007568088	2.31961655356348	2.33284832510823	2.99589188536142	2.18315944300606	-0.0993944560007913	0.909926426157423	0.998431161219273
Merged-chr17-34540536-2	chr17	34540436	34540636	+	630.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23184.0	NM_030747	624681.0	Mm.471592	NM_030747	ENSMUSG00000092618	Btnl6	EG624681|Gm6519|NG13	butyrophilin-like 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-25098932-2	chr8	25098832	25099032	+	617.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_031257, intron 1 of 11)	intron (NM_031257, intron 1 of 11)	2879.0	NM_031257	83436.0	Mm.261122	NM_031257	ENSMUSG00000031557	Plekha2	6430512N22Rik|AI851530|AU041791|TAPP2|W91773	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-124037016-2	chr9	124036916	124037116	+	859.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15045.0	NM_009914	12771.0	Mm.57050	NM_009914	ENSMUSG00000035448	Ccr3	CC-CKR3|CKR3|Cmkbr1l2|Cmkbr3	chemokine (C-C motif) receptor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-62551089-4	chr11	62550990	62551190	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_002875)	promoter-TSS (NR_002875)	-81.0	NM_011664	22187.0	Mm.371592	NM_011664	ENSMUSG00000019505	Ubb	AL033289|Rps27a|Uba52|Ubb2|Ubc	ubiquitin B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-114444166-4	chr5	114444061	114444261	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023556)	promoter-TSS (NM_023556)	-108.0	NM_001306205	17855.0	Mm.28088	NM_023556	ENSMUSG00000041939	Mvk	2310010A05Rik|AI256848|AI414037|MK	mevalonate kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-59234908-2	chr4	59234808	59235008	+	625.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25143.0	NR_105031	101055769.0	Mm.421401	NR_105031		Gm12596	-	predicted gene 12596	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120458054-4	chr11	120457947	120458147	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025560)	promoter-TSS (NM_025560)	23.0	NM_001356385	66431.0	Mm.45063	NM_025560	ENSMUSG00000039670	Oxld1	1810049H13Rik	oxidoreductase like domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139410555-2	chr5	139410455	139410655	+	619.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177000, intron 1 of 1)	intron (NM_177000, intron 1 of 1)	4168.0	NM_177000	319772.0	Mm.440271	NM_177000	ENSMUSG00000044092	C130050O18Rik	-	RIKEN cDNA C130050O18 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-46773575-2	chr17	46773475	46773675	+	707.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_025966)	TTS (NM_025966)	940.0	NM_025966	67101.0	Mm.358702	NM_025966	ENSMUSG00000062619	2310039H08Rik	-	RIKEN cDNA 2310039H08 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-4752652-4	chr7	4752542	4752742	+	700.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_172895)	TTS (NM_172895)	260.0	NM_183406	333182.0	Mm.29625	NM_183405	ENSMUSG00000051811	Cox6b2	1700067P11Rik|BC048670|COXVIB2	cytochrome c oxidase subunit VIb polypeptide 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-30643572-2	chr14	30643472	30643672	+	698.3000490000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10803.0	NM_177815	328370.0	Mm.259657	NM_177815	ENSMUSG00000052395	Rft1	D930025H04	RFT1 homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128714518-3	chr2	128714412	128714612	+	687.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 1 of 18)	intron (NM_008587, intron 1 of 18)	15597.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	2.09045721546632	2.0121634924496	1.23180344044666	1.87886533331454	1.7913759463508	1.27508971115708	1.23970884726158	0.994913730681669	-1.55536227645191	0.187470000357625	0.664995221281668
Merged-chr6-50559330-2	chr6	50559230	50559430	+	663.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7144.0	NM_007808	13063.0	Mm.35389	NM_007808	ENSMUSG00000063694	Cycs	-	cytochrome c, somatic	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-93129395-4	chr2	93129264	93129464	+	912.0750119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58184.0	NM_001356536	277414.0	Mm.41033	NM_001025246	ENSMUSG00000068735	Trp53i11	Tp53i11	transformation related protein 53 inducible protein 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-25694854-4	chr8	25694766	25694966	+	901.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081269, intron 15 of 22)	intron (NM_001081269, intron 15 of 22)	-25182.0	NR_121642	71910.0	Mm.385055	NM_028000	ENSMUSG00000031570	Plpp5	1810019D05Rik|2310022A04Rik|AW045471|Ppapdc1|Ppapdc1b	phospholipid phosphatase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-94556446-4	chr16	94556344	94556544	+	988.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13762.0	NM_007890	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-20372052-4	chr14	20371952	20372152	+	978.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024512, intron 7 of 13)	MTD|LTR|ERVL-MaLR	16858.0	NM_134081	108671.0	Mm.2871	NM_134081	ENSMUSG00000021811	Dnajc9	5330419I01Rik|AU020082	DnaJ heat shock protein family (Hsp40) member C9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-58201476-4	chr14	58201374	58201574	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	128788.0	NM_013518	14180.0	Mm.8846	NM_013518	ENSMUSG00000021974	Fgf9	Eks	fibroblast growth factor 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80566487-4	chr10	80566350	80566550	+	864.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_078477)	TTS (NM_078477)	-4890.0	NM_025852	66932.0	Mm.1116	NM_025852	ENSMUSG00000047417	Rexo1	1700021P10Rik|2610511M11Rik|AW050347|EloA-BP1|Rex1|Tceb3bp1	REX1, RNA exonuclease 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-67355932-2	chr17	67355832	67356032	+	618.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1441.0	NM_001357625	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-92421630-2	chr16	92421530	92421730	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081549, intron 1 of 3)	intron (NM_001081549, intron 1 of 3)	-21552.0	NM_019466	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-105682673-1	chr5	105682573	105682773	+	818.0	f1_balb.idr	Intergenic	Intergenic	-17296.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	-0.947981310248532	-1.06986221617136	-1.08111523493323	-1.08767915324048	-0.521931119253548	-1.06742364006257	-1.07856779814469	-1.08733643431101	1.79154211409157	0.579573222034837	1
Merged-chr9-50479896-3	chr9	50479799	50479999	+	785.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14626.0	NM_029639	76509.0	Mm.29959	NM_029639	ENSMUSG00000032068	Plet1	0610037B23Rik|1600029D21Rik|AA407923|AU043048	placenta expressed transcript 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-90072822-2	chr9	90072722	90072922	+	621.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001312649, intron 9 of 10)	intron (NM_001312649, intron 9 of 10)	18555.0	NM_001312649	13036.0	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-25980880-4	chr8	25980767	25980967	+	979.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_029037, exon 5 of 5)	3' UTR (NM_029037, exon 5 of 5)	-4123.0	NM_029884	52120.0	Mm.28326	NM_029884	ENSMUSG00000037260	Hgsnat	9430010M12Rik|AW208455|D8Ertd354e|Tmem76	heparan-alpha-glucosaminide N-acetyltransferase	protein-coding	0.96895540496263	0.410855511605227	0.562299474339509	0.882600283206487	0.909694928229964	0.412098604909253	0.406577635616864	0.549040337083954	-0.893301481858193	0.614158774919977	1
Merged-chr5-4533774-1	chr5	4533674	4533874	+	937.0	f0_c57.idr	Intergenic	Intergenic	224442.0	NM_021457	14362.0	Mm.246003	NM_021457	ENSMUSG00000044674	Fzd1	AW227548|FZ-1|Fz1	frizzled class receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-90022192-2	chr7	90022134	90022334	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	-6925.0	NR_110365	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19718702-2	chr7	19718602	19718802	+	886.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_008990, intron 8 of 8)	B3A|SINE|B2	-3273.0	NM_016871	53333.0	Mm.61682	NM_016871	ENSMUSG00000002984	Tomm40	AW539759|Mom35|Tom40	translocase of outer mitochondrial membrane 40	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-119370048-4	chr12	119369960	119370160	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73350.0	NM_001163136	238455.0	Mm.31376	NM_001163136	ENSMUSG00000041886	Macc1	4732474O15Rik|Gm267	metastasis associated in colon cancer 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-34171912-4	chr10	34171816	34172016	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172508, intron 2 of 5)	intron (NM_172508, intron 2 of 5)	35635.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45731261-3	chr7	45731162	45731362	+	887.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_017465, exon 6 of 7)	exon (NM_017465, exon 6 of 7)	-5446.0	NM_027055	69363.0	Mm.45607	NM_027055	ENSMUSG00000070563	Spaca4	1700008E09Rik|AV043694|Samp14	sperm acrosome associated 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-24059125-3	chr10	24059018	24059218	+	873.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER45C|DNA|hAT-Tip100	9608.0	NM_001010839	435207.0	Mm.377966	NM_001010839	ENSMUSG00000100950	Taar7f	taR-7f	trace amine-associated receptor 7F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-154158735-2	chr4	154158635	154158835	+	678.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_151647, intron 3 of 3)	intron (NR_151647, intron 3 of 3)	1949.0	NR_151647	67808.0	Mm.288737	NM_026388	ENSMUSG00000029030	Tprgl	1200015A19Rik|Svap30|Tprg1l|mover	transformation related protein 63 regulated like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-85084351-4	chr16	85084245	85084445	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198825, intron 3 of 15)	intron (NM_001198825, intron 3 of 15)	89362.0	NM_001198825	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	2.37175152943631	3.05725976104518	2.56975784346732	2.09775525747523	2.39125301910534	3.07915936118458	2.70051748011295	2.10816502468994	0.0972666231181855	0.900235785931596	0.998431161219273
Merged-chr9-65345323-1	chr9	65345223	65345423	+	543.0	f1_c57bl6.idr	promoter-TSS (NM_016688)	promoter-TSS (NM_016688)	-745.0	NM_016688	50996.0	Mm.29193	NM_016688	ENSMUSG00000041837	Pdcd7	C80112|ES18	programmed cell death 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122135902-2	chr5	122135756	122135956	+	840.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289809)	promoter-TSS (NM_001289809)	-963.0	NM_001289809	330188.0	Mm.386907	NM_183307	ENSMUSG00000043036	Ccdc63	4921511C16Rik	coiled-coil domain containing 63	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-112930282-4	chr6	112930187	112930387	+	793.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080448, intron 1 of 21)	intron (NM_080448, intron 1 of 21)	16979.0	NM_080448	259302.0	Mm.236401	NM_080448	ENSMUSG00000030257	Srgap3	AI452337|Arhgap14|D130026O08Rik|Gbi|MEGAP|WRP|mKIAA0411	SLIT-ROBO Rho GTPase activating protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6059367-2	chr19	6059267	6059467	+	682.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001160239, exon 5 of 5)	exon (NM_001160239, exon 5 of 5)	1400.0	NM_001190436	14109.0	Mm.329631	NM_007990	ENSMUSG00000038274	Fau	MNSFbeta	Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed (fox derived)	protein-coding	-0.773269170465148	-0.536731853074065	-1.03283113491845	-1.03706869426034	-1.03996662017948	-1.01870368359699	-1.03020260335842	-1.0367099657609	-2.78541583542897	0.373634043026092	1
Merged-chr13-119612258-2	chr13	119612158	119612358	+	587.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	-11561.0	NM_020279	56838.0	Mm.143745	NM_020279	ENSMUSG00000074715	Ccl28	CCK1|MEC|Scya28	chemokine (C-C motif) ligand 28	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107247693-3	chr9	107247594	107247794	+	868.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15785.0	NM_153413	208869.0	Mm.150259	NM_153413	ENSMUSG00000039716	Dock3	MOCA|PBP|mKIAA0299	dedicator of cyto-kinesis 3	protein-coding	1.95922816136204	2.9946370853142	2.3893882027706	2.78790259937185	3.72647546769807	4.55907681432384	3.70570240697389	4.71718783854247	2.56710699101528	1.82150221532095e-05	0.000754498098128979
Merged-chr4-40843841-2	chr4	40843741	40843941	+	657.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_022305, intron 1 of 5)	B3A|SINE|B2	6297.0	NR_039584	100628614.0		NR_039584	ENSMUSG00000096377	Mir5123	mmu-mir-5123|mu-mir-5123	microRNA 5123	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-100436859-4	chr3	100436762	100436962	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040543, intron 2 of 2)	intron (NR_040543, intron 2 of 2)	10457.0	NR_040543	73806.0	Mm.396549	NR_040543	ENSMUSG00000086923	4930406D18Rik	-	RIKEN cDNA 4930406D18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-92101189-4	chr6	92101082	92101282	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347342, intron 1 of 14)	intron (NM_001347342, intron 1 of 14)	8749.0	NM_001347342	22026.0	Mm.87062	NM_011630	ENSMUSG00000005893	Nr2c2	TAK1|Tr4|mKIAA4145	nuclear receptor subfamily 2, group C, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-74665073-4	chr7	74664971	74665171	+	878.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-110291.0	NM_001038643	108116.0	Mm.425467	NM_023908	ENSMUSG00000025790	Slco3a1	5830414C08Rik|Anr1|MJAM|OATP-D|R75096|Slc21a11	solute carrier organic anion transporter family, member 3a1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-67717387-2	chr14	67717287	67717487	+	734.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111028, intron 1 of 11)	intron (NM_001111028, intron 1 of 11)	1289.0	NM_001285933	105440.0	Mm.6720	NM_134073	ENSMUSG00000034327	Kctd9	-	potassium channel tetramerisation domain containing 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-108342524-4	chr9	108342418	108342618	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3438.0	NM_001329527	14775.0	Mm.1090	NM_008160	ENSMUSG00000063856	Gpx1	AI195024|AL033363|CGPx|GPx-1|GSHPx-1|Gpx	glutathione peroxidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24718051-2	chr17	24717951	24718151	+	662.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026205)	promoter-TSS (NM_026205)	6.0	NM_026205	67504.0	Mm.46159	NM_026205	ENSMUSG00000008482	Rnf151	1700010O16Rik|AV047371	ring finger protein 151	protein-coding	1.23120063779362	1.36430625454541	1.80477707701351	1.74977622860384	1.57804848507462	1.37372337081308	0.954637476903673	1.29435947389121	-0.89045598247043	0.459890829362168	0.920651307678635
Merged-chr5-73146577-2	chr5	73146477	73146677	+	663.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028194, intron 4 of 62)	intron (NM_028194, intron 4 of 62)	110041.0	NM_028194	72313.0	Mm.260594	NM_028194	ENSMUSG00000070733	Fryl	2010313D22Rik|2310004H21Rik|2510002A14Rik|9030227G01Rik|mKIAA0826	FRY like transcription coactivator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-102981687-4	chr14	102981567	102981767	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_039592)	TTS (NR_039592)	965.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-63123268-3	chr15	63123174	63123374	+	866.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	356334.0	NR_045279	432958.0	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-57975645-1	chr15	57975545	57975745	+	828.333313	f0_balb.idr	Intergenic	Intergenic	-10258.0	NM_173862	239463.0	Mm.221241	NM_173862	ENSMUSG00000051225	Fam83a	-	family with sequence similarity 83, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-21679941-4	chr17	21679850	21680050	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001354753)	promoter-TSS (NM_001354753)	73.0	NM_001354753	100310809.0	Mm.293030	NM_001354753		Gm10509	-	predicted gene 10509	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81335583-2	chr10	81335483	81335683	+	790.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_009325)	TTS (NM_009325)	6880.0	NM_001277265	21390.0	Mm.4545	NM_009325	ENSMUSG00000034881	Tbxa2r	TP|TXA2-R	thromboxane A2 receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-79859934-2	chr10	79859834	79860034	+	766.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001170935)	TTS (NM_001170935)	-2653.0	NR_105875	102465549.0		NR_105875	ENSMUSG00000098562	Mir6910	Gm27763|mmu-mir-6910	microRNA 6910	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95233118-2	chr3	95233018	95233218	+	910.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038708, intron 3 of 4)	intron (NM_001038708, intron 3 of 4)	4175.0	NM_001038708	57912.0	Mm.28189	NM_172395	ENSMUSG00000046722	Cdc42se1	1300002M12Rik|AW558204|Cdcse1|SCIP1|Spec1	CDC42 small effector 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-144876045-2	chr5	144875945	144876145	+	760.666626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_029438)	TTS (NM_029438)	20771.0	NR_106006	102465629.0		NR_106006	ENSMUSG00000098822	Mir7039	Gm27824|mmu-mir-7039	microRNA 7039	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36698812-2	chr18	36698712	36698912	+	745.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-2887.0	NM_172831	240216.0	Mm.252323	NM_172831	ENSMUSG00000044719	E230025N22Rik	EG240216	Riken cDNA E230025N22 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-23820201-1	chr17	23820101	23820301	+	902.0	f1_balb.idr	exon (NM_175229, exon 10 of 14)	exon (NM_175229, exon 10 of 14)	-3090.0	NR_039586	100628593.0		NR_039586	ENSMUSG00000092981	Mir5125	mmu-mir-5125|mu-mir-5125	microRNA 5125	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-118727469-1	chr2	118727369	118727569	+	609.0	f1_balb.idr	intron (NM_177568, intron 1 of 31)	intron (NM_177568, intron 1 of 31)	969.0	NM_177568	18796.0	Mm.215156	NM_177568	ENSMUSG00000040061	Plcb2	AI550384|B230205M18Rik|B230399N12	phospholipase C, beta 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-23077049-2	chr10	23076949	23077149	+	713.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-256921.0	NM_011545	21412.0	Mm.16497	NM_011545	ENSMUSG00000045680	Tcf21	Pod-1|Pod1|bHLHa23|capsulin|epc|epicardin	transcription factor 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-120947850-3	chr7	120947750	120947950	+	859.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_025298)	TTS (NM_025298)	30106.0	NM_001164096	26939.0	Mm.193632	NM_025298	ENSMUSG00000030880	Polr3e	RPC5|Sin	polymerase (RNA) III (DNA directed) polypeptide E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131287056-4	chr1	131286963	131287163	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001081011, exon 23 of 23)	3' UTR (NM_001081011, exon 23 of 23)	-7500.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-100929927-2	chr12	100929827	100930027	+	680.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026681, intron 24 of 29)	intron (NM_026681, intron 24 of 29)	-21729.0	NM_001177673	238377.0	Mm.32160	NM_175493	ENSMUSG00000047415	Gpr68	BB131428|Ogr1	G protein-coupled receptor 68	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-89553522-2	chr6	89553422	89553622	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025351, intron 4 of 7)	intron (NM_025351, intron 4 of 7)	42130.0	NM_025351	66098.0	Mm.20313	NM_025351	ENSMUSG00000030086	Chchd6	0710001P09Rik|1700021B03Rik	coiled-coil-helix-coiled-coil-helix domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-64079999-2	chr9	64079899	64080099	+	740.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040743)	promoter-TSS (NR_040743)	-762.0	NR_040743	76814.0	Mm.243771	NR_040743		Scarletltr	2600006L11Rik	Scarletltr, erythroid developmental long intergenic non-protein coding transcript	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-143055521-2	chr7	143055422	143055622	+	772.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133655, intron 1 of 7)	intron (NM_133655, intron 1 of 7)	-1836.0	NR_110354	97423.0	Mm.5250	NM_133790	ENSMUSG00000059277	R74862	-	expressed sequence R74862	ncRNA	-0.238794932023934	0.79338556730734	-0.225475686830959	-0.230448180250678	-0.237545824959202	-0.217659572917129	-0.224061603924655	0.384635387640427	-1.0764438285379	0.661720322156576	1
Merged-chr12-102464482-2	chr12	102464382	102464582	+	641.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4652.0	NM_001199004	27277.0	Mm.273370	NM_013747	ENSMUSG00000021192	Golga5	Ret-II	golgi autoantigen, golgin subfamily a, 5	protein-coding	0.486714363583734	0.199925336626647	0.191178695754743	1.08998668603269	0.174576762243633	0.201881492422261	0.193117646840215	1.18158689596695	-0.0904368505874828	0.964426744564778	1
Merged-chr9-65828822-2	chr9	65828722	65828922	+	698.166687	f1_balb.idr|f1_c57bl6.idr	TTS (NM_019797)	TTS (NM_019797)	-1258.0	NM_172536	214812.0	Mm.139231	NM_172536	ENSMUSG00000040524	Zfp609	9830165N24|BC016271|Znf609|mKIAA0295	zinc finger protein 609	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-88523721-2	chr18	88523621	88523821	+	680.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	370486.0	NM_018821	54607.0	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-42053416-2	chr13	42053316	42053516	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007772, intron 1 of 8)	intron (NM_007772, intron 1 of 8)	1395.0	NM_007772	110521.0	Mm.4808	NM_007772	ENSMUSG00000021366	Hivep1	Cryabp1	human immunodeficiency virus type I enhancer binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95674381-4	chr3	95674290	95674490	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13527.0	NM_144899	229595.0	Mm.490574	NM_144899	ENSMUSG00000015850	Adamtsl4	ADAMTSL-4|Tsrc1	ADAMTS-like 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129826844-2	chr4	129826742	129826942	+	645.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164745, intron 1 of 5)	intron (NM_001164745, intron 1 of 5)	6134.0	NM_001164745	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-81101579-4	chr3	81101492	81101692	+	916.0125119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019971, intron 1 of 5)	B1F|SINE|Alu	65176.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	-0.990650380700351	-0.904651015833861	-1.24251755869974	-1.25106517403754	-1.25878969348514	-1.22985680599037	-1.24016191879605	-1.2495351549788	-2.40917549759668	0.466501539218365	1
Merged-chr11-87461938-4	chr11	87461836	87462036	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199293, intron 2 of 30)	CpG	34345.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-51067720-1	chr14	51067620	51067820	+	563.0	f1_balb.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	3722.0	NM_207558	404319.0	Mm.377276	NM_207558	ENSMUSG00000035932	Olfr750	GA_x5J8B7W5WBF-6267395-6266441|GA_x6K02T2PMLR-6808276-6807281|MOR103-18	olfactory receptor 750	protein-coding	1.64108518287539	1.15035890522171	2.52225202643117	1.89186726326645	2.14773046291878	1.68169277076801	1.12481471055696	3.15082444613362	0.822944181055105	0.453596146844434	0.919120493489568
Merged-chr15-103239959-4	chr15	103239880	103240080	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_002885)	promoter-TSS (NR_002885)	-128.0	NM_001076789	12419.0	Mm.262059	NM_007626	ENSMUSG00000009575	Cbx5	2610029O15Rik|C75991|HP1|Hp1a|Hp1alpha	chromobox 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101265427-1	chr11	101265327	101265527	+	566.0	f0_balb.idr	exon (NM_175638, exon 6 of 19)	exon (NM_175638, exon 6 of 19)	4860.0	NM_175638	69847.0	Mm.23656	NM_175638	ENSMUSG00000035112	Wnk4	2010002J11Rik|Pha2b|Prkwnk4	WNK lysine deficient protein kinase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-56034608-4	chr14	56034508	56034708	+	939.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4113.0	NM_010782	17232.0	Mm.436621	NM_010782	ENSMUSG00000071361	Mcpt9	MMCP-1|MMCP-9|MMCP9	mast cell protease 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-102285082-2	chr15	102284982	102285182	+	779.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5626.0	NM_134100	106073.0	Mm.287740	NM_134100	ENSMUSG00000045665	Mfsd5	AA409375|AW556797|D15Mgi27	major facilitator superfamily domain containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124359525-1	chr6	124359425	124359625	+	606.0	f0_balb.idr	Intergenic	L1M4|LINE|L1	-2439.0	NM_001177502	76921.0	Mm.425335	NM_001177502	ENSMUSG00000079346	1700013D24Rik	-	RIKEN cDNA 1700013D24 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-35028483-4	chr6	35028378	35028578	+	849.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164413, intron 10 of 11)	intron (NM_001164413, intron 10 of 11)	-50479.0	NM_001025573	243753.0	Mm.440221	NM_001025573	ENSMUSG00000029847	Slc23a4	2010107G12Rik|Gm468	solute carrier family 23 member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-3534203-2	chr11	3534103	3534303	+	658.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159284, intron 3 of 21)	B1_Mur3|SINE|Alu	5089.0	NM_013870	29856.0	Mm.188516	NM_013870	ENSMUSG00000020439	Smtn	smsmo	smoothelin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-140206784-2	chr6	140206684	140206884	+	580.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR44A|LTR|ERVK	165259.0	NM_007605	12344.0	Mm.12817	NM_007605	ENSMUSG00000041791	Capza3	510-4|Cappa3|Gsg3|Tex8|repro32	capping protein (actin filament) muscle Z-line, alpha 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-46645234-2	chr17	46645134	46645334	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001316742)	promoter-TSS (NM_001316742)	846.0	NM_001357130	74764.0	Mm.279599	NM_029091	ENSMUSG00000003546	Klc4	1200014P03Rik|AA408085|AW146303|Knsl8	kinesin light chain 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-63737616-4	chr9	63737526	63737726	+	834.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016769, intron 1 of 8)	intron (NM_016769, intron 1 of 8)	20368.0	NM_016769	17127.0	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-99152511-3	chr13	99152434	99152634	+	621.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32289.0	NM_001004149	238803.0	Mm.343207	NM_001004149	ENSMUSG00000050919	Zfp366	DC-SCRIPT|Znf366	zinc finger protein 366	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-151748499-3	chr2	151748389	151748589	+	856.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_138568, exon 3 of 3)	non-coding (NR_138568, exon 3 of 3)	2976.0	NR_138568	75283.0	Mm.195735	NM_029235		4930556L07Rik	1700020P01Rik|4930593I08Rik	RIKEN cDNA 4930556L07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-12759487-2	chr17	12759387	12759587	+	579.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010515, intron 1 of 47)	intron (NM_010515, intron 1 of 47)	10219.0	NM_010515	16004.0	Mm.26553	NM_010515	ENSMUSG00000023830	Igf2r	AI661837|CD222|CI-MPR|M6P/IGF2R|Mpr300	insulin-like growth factor 2 receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116096583-4	chr11	116096462	116096662	+	896.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	AT_rich|Low_complexity|Low_complexity	-9567.0	NM_001347642	22378.0	Mm.284792	NM_016852	ENSMUSG00000034341	Wbp2	-	WW domain binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-36094327-3	chr4	36094224	36094424	+	983.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001165999, intron 5 of 7)	intron (NM_001165999, intron 5 of 7)	-249120.0	NM_175516	242384.0	Mm.132507	NM_175516	ENSMUSG00000045083	Lingo2	B230217C06Rik|Lern3|Lrrn6c	leucine rich repeat and Ig domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-145740224-4	chr2	145740119	145740319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033220, intron 3 of 3)	intron (NR_033220, intron 3 of 3)	39024.0	NR_033220	408057.0	Mm.486711	NR_033220	ENSMUSG00000087594	BC039771	-	cDNA sequence BC039771	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-5054324-3	chr18	5054234	5054434	+	867.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153153, intron 4 of 34)	intron (NM_153153, intron 4 of 34)	7745.0	NM_001347449	225115.0	Mm.136791	NM_153153	ENSMUSG00000024236	Svil	AU024053|B430302E16Rik	supervillin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-142007253-2	chr4	142007153	142007353	+	697.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177868, intron 1 of 31)	intron (NM_177868, intron 1 of 31)	4398.0	NM_177868	329977.0	Mm.252019	NM_028429	ENSMUSG00000051435	Fhad1	2900090M10Rik|B230311F11	forkhead-associated (FHA) phosphopeptide binding domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-78176645-4	chr9	78176544	78176744	+	966.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040401, exon 2 of 4)	non-coding (NR_040401, exon 2 of 4)	730.0	NR_040401	320295.0	Mm.131285	NR_040401	ENSMUSG00000097574	C920006O11Rik	-	RIKEN cDNA C920006O11 gene	ncRNA	4.08129338193108	4.10661951574557	4.81554746833885	4.39275863827514	4.2141212359081	4.58132338962829	4.68274098917456	4.55259847439447	0.170263040768692	0.66366717094949	0.991657818949578
Merged-chr10-25116221-3	chr10	25116112	25116312	+	929.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	83958.0	NM_001347460	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117952292-4	chr10	117952192	117952392	+	965.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26833.0	NR_045342	71067.0	Mm.410793	NR_045342	ENSMUSG00000112500	4933411E08Rik	-	RIKEN cDNA 4933411E08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-172203759-3	chr1	172203650	172203850	+	665.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001329871, intron 1 of 3)	intron (NM_001329871, intron 1 of 3)	3054.0	NM_001329871	18611.0	Mm.544	NM_011063	ENSMUSG00000013698	Pea15a	Mat1|PEA-15|Pea15|Pkcs15	phosphoprotein enriched in astrocytes 15A	protein-coding	-0.849540347160918	-0.83791883826935	-0.842874229298225	-0.845379854937529	-0.567718301155892	-0.197178340663439	-0.842158039317344	-0.844942093372508	3.16182143622335	0.281564155371618	1
Merged-chr12-102372070-2	chr12	102371970	102372170	+	717.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_177620, intron 6 of 9)	MTEa|LTR|ERVL-MaLR	67743.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-89039540-2	chr11	89039440	89039640	+	683.833374	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_019505, exon 11 of 11)	3' UTR (NM_019505, exon 11 of 11)	21208.0	NM_019505	56077.0	Mm.153695	NM_019505	ENSMUSG00000000276	Dgke	C87606|DAGK6|DGK	diacylglycerol kinase, epsilon	protein-coding	1.35068063049451	1.55152762996694	1.48814174556817	1.43776041042496	1.02616351744558	0.747810765005904	0.735244484127344	0.724368518106489	-3.37008824763847	0.0296400493836561	0.235055539745298
Merged-chr3-95016263-4	chr3	95016117	95016317	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030074)	promoter-TSS (NM_030074)	-760.0	NM_001357863	78266.0	Mm.389478	NM_030074	ENSMUSG00000019338	Zfp687	4931408L03Rik|Znf687|mKIAA1441	zinc finger protein 687	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-121736334-3	chr11	121736235	121736435	+	766.277771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33908.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88422550-4	chr3	88422446	88422646	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001281795, intron 1 of 3)	intron (NM_001281795, intron 1 of 3)	2595.0	NM_178696	229517.0	Mm.301740	NM_178696	ENSMUSG00000050144	Slc25a44	6720482A19|B430110G05Rik	solute carrier family 25, member 44	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-145774488-4	chr4	145774384	145774584	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-7059.0	NM_001083918	666532.0	Mm.392861	NM_001083918	ENSMUSG00000067916	Zfp991	Gm13139	zinc finger protein 991	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-85556692-2	chr8	85556592	85556792	+	783.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1421.0	NM_019794	56445.0	Mm.475573	NM_019794	ENSMUSG00000031701	Dnaja2	1500017M13Rik|2010206B19Rik|DNAJ|DNJ3|Dnaj3|HIRIP4|PRO3015|mDj3	DnaJ heat shock protein family (Hsp40) member A2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-35937284-2	chr16	35937184	35937384	+	638.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013371, intron 1 of 4)	RMER15|LTR|ERVL	-1186.0	NM_030253	80285.0	Mm.49074	NM_030253	ENSMUSG00000022906	Parp9	ARTD9|AW214463|BC003281|Bagl|Bal|PARP-9	poly (ADP-ribose) polymerase family, member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-131159622-3	chr2	131159528	131159728	+	888.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_154887, intron 1 of 6)	intron (NR_154887, intron 1 of 6)	453.0	NR_154887	67326.0	Mm.27711	NM_026091	ENSMUSG00000027327	1700037H04Rik	-	RIKEN cDNA 1700037H04 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-26550040-4	chr2	26549934	26550134	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31022.0	NM_178444	353156.0	Mm.268933	NM_178444	ENSMUSG00000026921	Egfl7	VE-statin|Zneu1	EGF-like domain 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-133497127-2	chr2	133497027	133497227	+	616.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55032.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41318542-1	chr19	41318442	41318642	+	555.0	f1_balb.idr	intron (NM_031376, intron 8 of 16)	intron (NM_031376, intron 8 of 16)	-54538.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-119635162-2	chr8	119635062	119635262	+	940.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357210, intron 1 of 3)	intron (NM_001357210, intron 1 of 3)	518.0	NM_001357210	66733.0	Mm.358699	NM_025734	ENSMUSG00000045246	Kcng4	4921535I01Rik|AW049024|KV6.3|KV6.4	potassium voltage-gated channel, subfamily G, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-71346222-2	chr10	71346122	71346322	+	756.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR25A|LTR|ERVK	-1373.0	NM_134007	52637.0	Mm.254114	NM_134007	ENSMUSG00000037710	Cisd1	AU043990|AW743335|D10Ertd214e|Zcd1|mitoNEET	CDGSH iron sulfur domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-132648509-2	chr3	132648409	132648609	+	776.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER5|LTR|ERV1	18318.0	NM_001270430	433653.0		NM_001270430	ENSMUSG00000091721	Gimd1	EG433653|Gm5549	GIMAP family P-loop NTPase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-30860252-2	chr3	30860152	30860352	+	948.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286994, intron 1 of 3)	L1_Mus2|LINE|L1	4302.0	NM_001286994	71862.0	Mm.272019	NM_027965	ENSMUSG00000037661	Gpr160	1700025D19Rik|GPCR150	G protein-coupled receptor 160	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-13575325-6	chr2	13575159	13575359	+	970.2666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011701, intron 1 of 8)	intron (NM_011701, intron 1 of 8)	948.0	NM_011701	22352.0	Mm.268000	NM_011701	ENSMUSG00000026728	Vim	-	vimentin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85111886-2	chr12	85111786	85111986	+	845.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030225, intron 2 of 14)	intron (NM_030225, intron 2 of 14)	1053.0	NM_030225	78920.0	Mm.296221	NM_030225	ENSMUSG00000004789	Dlst	1600017E01Rik|4632413C10Rik|4930529O08Rik|DLTS	dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-98806774-2	chr15	98806674	98806874	+	893.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001013741, exon 2 of 2)	exon (NM_001013741, exon 2 of 2)	1151.0	NM_001013741	13199.0	Mm.390810	NM_001013741	ENSMUSG00000059213	Ddn	Gm748	dendrin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-92067777-2	chr6	92067677	92067877	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172731, intron 15 of 20)	intron (NM_172731, intron 15 of 20)	-23641.0	NM_011630	22026.0	Mm.87062	NM_011630	ENSMUSG00000005893	Nr2c2	TAK1|Tr4|mKIAA4145	nuclear receptor subfamily 2, group C, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-111563491-4	chr9	111563426	111563626	+	993.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016853, intron 10 of 10)	intron (NM_016853, intron 10 of 10)	124445.0	NM_172928	245038.0	Mm.26361	NM_172928	ENSMUSG00000032500	Dclk3	BC056929|C730036H08|Dcamkl3	doublecortin-like kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10868568-2	chr19	10868468	10868668	+	884.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133804, intron 1 of 10)	intron (NM_133804, intron 1 of 10)	1211.0	NM_133804	98170.0	Mm.490254	NM_133804	ENSMUSG00000024736	Tmem132a	6720481D13Rik|Hspa5bp1|Orai1|R74613	transmembrane protein 132A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-149303391-4	chr4	149303304	149303504	+	977.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008441, intron 1 of 20)	intron (NM_008441, intron 1 of 20)	4294.0	NM_207682	16561.0	Mm.402393	NM_008441	ENSMUSG00000063077	Kif1b	A530096N05Rik|AI448212|AI506502|D4Mil1e|KIF1Bp130|KIF1Bp204	kinesin family member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-50937295-2	chr6	50937201	50937401	+	670.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	161186.0	NR_045984	319981.0	Mm.131454	NR_045984	ENSMUSG00000107667	C530044C16Rik	-	RIKEN cDNA C530044C16 gene	ncRNA	2.82924609594061	2.35962489022052	2.5331866320738	2.07956824457951	2.63453261222692	2.74778697789454	2.43375714752972	2.23413463852966	0.0869714199022743	0.91050310334267	0.998431161219273
Merged-chr5-110173217-1	chr5	110173117	110173317	+	595.0	f1_c57bl6.idr	intron (NR_040431, intron 1 of 2)	MTEa|LTR|ERVL-MaLR	3287.0	NR_040431	100504007.0	Mm.441495	NR_040430	ENSMUSG00000086247	Gm15787	-	predicted gene 15787	ncRNA	-0.0753823037026756	-0.409693184805165	-0.41308504625883	-0.41568727632843	-0.0675147503661257	-0.408925648779647	-0.412338791847952	-0.017607597276746	1.12782992069305	0.663699000646157	1
Merged-chr3-105899953-4	chr3	105899847	105900047	+	937.2708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027025, intron 1 of 6)	intron (NM_027025, intron 1 of 6)	-4474.0	NM_009631	11542.0	Mm.235024	NM_009631	ENSMUSG00000000562	Adora3	A3AR|A3R|AA3R|ARA3|Gpcr2	adenosine A3 receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-38982856-4	chr6	38982755	38982955	+	942.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 4 of 12)	ORR1D2|LTR|ERVL-MaLR	63869.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-32188722-2	chr16	32188622	32188822	+	668.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR18B|LTR|ERVK	8922.0	NM_001033539	328660.0	Mm.441006	NM_001033539	ENSMUSG00000075269	Bex6	B020003O03Rik	brain expressed family member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-51825783-2	chr11	51825683	51825883	+	639.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357588, intron 9 of 12)	intron (NM_001357588, intron 9 of 12)	31698.0	NM_199299	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-36488751-2	chr15	36488651	36488851	+	584.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358007, intron 2 of 4)	intron (NM_001358007, intron 2 of 4)	7983.0	NM_001358007	68839.0	Mm.396537	NM_175134	ENSMUSG00000048307	Ankrd46	1110054N06Rik|AI314978|AI987733	ankyrin repeat domain 46	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-112324157-2	chr13	112324057	112324257	+	575.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001168403, intron 4 of 11)	intron (NM_001168403, intron 4 of 11)	35639.0	NM_001168404	77318.0	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	-0.21320032576612	-0.334399409313427	-0.338070084865203	0.0562500403630164	-0.209469151572319	-0.333569258017064	-0.337262189757647	0.164081329775095	0.360336319037102	0.878757571189682	1
Merged-chr6-128797556-2	chr6	128797461	128797661	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8920.0	NM_008527	17059.0	Mm.480764	NM_008527	ENSMUSG00000030325	Klrb1c	AI462337|CD161|Klrb1b|Ly-59|Ly55c|Ly59|NK-RP1|NK1.1|NKR-P1.9|NKRP1|NKRP140|Nk-1|Nk-1.2|Nk1|Nk1.2|Nkrp1b|Nkrp1c|ly-55c	killer cell lectin-like receptor subfamily B member 1C	protein-coding	1.12369166115417	2.79783820866391	1.77063672316701	0.933050183998309	1.32437345729643	2.12793972579709	0.961109447301023	1.97343505732977	-0.539908543649956	0.65780278180339	0.988704682801132
Merged-chr3-87263630-3	chr3	87263538	87263738	+	893.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030707)	promoter-TSS (NM_030707)	-114.0	NM_030707	80891.0	Mm.45173	NM_030707	ENSMUSG00000015852	Fcrls	2810439C17Rik|9330158F12|FcRH2sc|Fcrh2|IFGP2|IgSR|MMAN-g|Msr2|moFcRH2sc	Fc receptor-like S, scavenger receptor	protein-coding	2.53959299807518	2.57308127464432	2.87563682866564	3.44331762845376	3.02868297459548	2.22143199060326	3.42948117441198	3.46015453838709	0.368603426547109	0.592118260699548	0.97015200361199
Merged-chr10-78463644-2	chr10	78463544	78463744	+	665.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172134, intron 1 of 10)	intron (NM_172134, intron 1 of 10)	1304.0	NM_172134	216134.0	Mm.206159	NM_172134	ENSMUSG00000032788	Pdxk	2310036D04Rik|AA119688|C77999	pyridoxal (pyridoxine, vitamin B6) kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-61073574-2	chr18	61073514	61073714	+	831.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_008809, intron 13 of 22)	intron (NM_008809, intron 13 of 22)	28464.0	NM_008809	18596.0	Mm.4146	NM_008809	ENSMUSG00000024620	Pdgfrb	AI528809|CD140b|PDGFR-1|Pdgfr	platelet derived growth factor receptor, beta polypeptide	protein-coding	0.38332395871449	0.00936698204465791	0.792872689528342	-0.00130201628614576	-0.00790336813302689	0.530840942814665	0.0046811591571457	-0.000487854636272461	-1.30288330600951	0.558289121404878	1
Merged-chr13-20049826-4	chr13	20049733	20049933	+	736.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C|LTR|ERVK	-40674.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	1.51250749788525	1.72224317298569	0.86978563523115	1.49256592407383	1.02160471919061	1.84681070281019	0.873207138496343	1.37501755320487	-0.335965300550048	0.798468065724648	0.998431161219273
Merged-chr17-48275639-4	chr17	48275510	48275710	+	956.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_172623)	TTS (NM_172623)	11315.0	NM_001163796	224840.0	Mm.131234	NM_172623	ENSMUSG00000051682	Treml4	5031403H21Rik|BB137214|IDCP1|TLT-4|TLT4|Treml3	triggering receptor expressed on myeloid cells-like 4	protein-coding	4.56231974252237	5.22587756570255	5.36006579788969	4.78298207766549	3.84336746006526	3.12028037432163	2.83579684958497	4.47813248704469	-1.62799795837325	0.000424365695868201	0.00981951880017764
Merged-chr13-23537722-2	chr13	23537622	23537822	+	638.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR48A|LTR|ERV1	2304.0	NM_145073	97908.0	Mm.261657	NM_145073	ENSMUSG00000099517	Hist1h3g	H3.1-221|M32460	histone cluster 1, H3g	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-134703849-4	chr4	134703759	134703959	+	944.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_207237, exon 1 of 12)	5' UTR (NM_207237, exon 1 of 12)	431.0	NM_207237	230815.0	Mm.18905	NM_207237	ENSMUSG00000037306	Man1c1	AI593348	mannosidase, alpha, class 1C, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-97781846-1	chr1	97781746	97781946	+	553.0	f1_c57bl6.idr	intron (NM_001310773, intron 3 of 7)	intron (NM_001310773, intron 3 of 7)	11674.0	NM_001310773	252876.0	Mm.86090	NM_026250	ENSMUSG00000026333	Gin1	4930429M06Rik|8430411H10Rik|Gin-1|Zh2c2	gypsy retrotransposon integrase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-45486288-3	chr10	45486225	45486425	+	912.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-16124.0	NM_001031772	380669.0	Mm.440328	NM_001031772	ENSMUSG00000063804	Lin28b	2810403D23Rik|D030047M17Rik|Lin-28.2	lin-28 homolog B (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-144010524-4	chr2	144010490	144010690	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133626, intron 1 of 2)	CpG	673.0	NM_133626	81910.0	Mm.13705	NM_024281	ENSMUSG00000027422	Rrbp1	1700087N07Rik|5730465C04Rik|ES/130|mKIAA1398|mRRp0|mRRp1.8|mRRp10|mRRp15a|mRRp15b|mRRp16.8|mRRp2|mRRp41|mRRp47|mRRp5.4|p180	ribosome binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41278405-2	chr19	41278305	41278505	+	648.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 16 of 16)	intron (NM_031376, intron 16 of 16)	-14401.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-43920763-4	chr7	43920660	43920860	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13011.0	NM_174865	317652.0	Mm.389896	NM_174865	ENSMUSG00000055193	Klk15	-	kallikrein related-peptidase 15	protein-coding	2.08633601353418	2.59067137979605	4.57324958281382	3.89830047005461	2.90677151159026	3.57303908649986	3.60707268379511	1.49710120800337	-0.786365502113506	0.508008902353983	0.943374049681311
Merged-chr9-124053721-4	chr9	124053630	124053830	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31759.0	NM_009914	12771.0	Mm.57050	NM_009914	ENSMUSG00000035448	Ccr3	CC-CKR3|CKR3|Cmkbr1l2|Cmkbr3	chemokine (C-C motif) receptor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28675230-4	chr7	28675100	28675300	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17649.0	NM_207238	233040.0	Mm.116116	NM_207238	ENSMUSG00000037463	Fbxo27	E130008B10Rik|FBG5|Gm161	F-box protein 27	protein-coding	2.32259213457823	1.22336831231221	2.44569991275266	1.87643481002506	1.52344748996793	2.14471815903761	1.80248986670618	1.74907082010071	-0.646904298398572	0.528222145418738	0.949209944897898
Merged-chr13-116711783-2	chr13	116711683	116711883	+	653.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	126395.0	NR_153406	74680.0	Mm.488118	NR_153406	ENSMUSG00000114290	4930435F18Rik	-	RIKEN cDNA 4930435F18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-130542279-4	chr10	130542145	130542345	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44866.0	NM_001103366	625131.0	Mm.469844	NM_001103366	ENSMUSG00000091511	Vmn2r87	EG625131	vomeronasal 2, receptor 87	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-9872797-2	chr13	9872697	9872897	+	555.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-107476.0	NM_144516	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59831690-4	chr15	59831580	59831780	+	915.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	-36721.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127449194-4	chr7	127449117	127449317	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175163)	promoter-TSS (NM_175163)	-59.0	NM_175163	71131.0	Mm.474533	NM_175163	ENSMUSG00000048921	Zfp689	4933416E05Rik|Znf689	zinc finger protein 689	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117138449-6	chr11	117138388	117138588	+	864.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166507, intron 2 of 16)	intron (NM_001166507, intron 2 of 16)	23316.0	NM_001166506	74136.0	Mm.272312	NM_028777	ENSMUSG00000020823	Sec14l1	1200017E04Rik|2810012L19Rik|Naa-35	SEC14-like lipid binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-45867184-1	chr1	45867084	45867284	+	733.0	f0_balb.idr	Intergenic	Intergenic	58410.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-95870117-4	chr11	95869977	95870177	+	887.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008081, intron 7 of 10)	B4A|SINE|B4	11260.0	NR_045187	73906.0	Mm.399894	NR_045187	ENSMUSG00000086015	4833417C18Rik	-	RIKEN cDNA 4833417C18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-20890593-3	chr1	20890497	20890697	+	972.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040492)	promoter-TSS (NR_040492)	49.0	NM_028829	74229.0	Mm.40780	NM_028829	ENSMUSG00000025931	Paqr8	1700019B16Rik|3110001D06Rik	progestin and adipoQ receptor family member VIII	protein-coding	2.03940479969469	2.04304044519106	1.17063623258191	1.3918792170081	1.68491045695621	2.20028679142457	1.98641540094737	3.03883791990028	1.52977295300152	0.133013925550266	0.570764692507331
Merged-chr18-23882317-4	chr18	23882216	23882416	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162941, intron 6 of 7)	intron (NM_001162941, intron 6 of 7)	-72372.0	NM_027007	69256.0	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-75874732-3	chr5	75874632	75874832	+	937.4722289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	103696.0	NM_010612	16542.0	Mm.285	NM_010612	ENSMUSG00000062960	Kdr	6130401C07|Flk-1|Flk1|Krd-1|Ly73|VEGFR-2|VEGFR2|orv|sVEGFR-2	kinase insert domain protein receptor	protein-coding	3.1899999028453	1.60635036531727	2.58699866555663	2.36259950242433	3.81885453046515	3.18329929005629	2.60860769434561	3.62071783781989	1.41289065032575	0.0549165607881455	0.344761543070179
Merged-chr18-4860399-2	chr18	4860299	4860499	+	628.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13G|LTR|ERVK	47913.0	NR_045881	100038439.0	Mm.387569	NR_045881	ENSMUSG00000097043	Gm10556	-	predicted gene 10556	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-142163654-2	chr2	142163554	142163754	+	776.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013802, intron 8 of 18)	intron (NM_001013802, intron 8 of 18)	737810.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83067354-4	chr11	83067255	83067455	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011408, intron 1 of 1)	RLTR11A|LTR|ERVK	2243.0	NM_011408	20556.0	Mm.278689	NM_011408	ENSMUSG00000072620	Slfn2	Shlf2	schlafen 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-77546737-4	chr14	77546636	77546836	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253759, intron 7 of 19)	intron (NM_001253759, intron 7 of 19)	-39868.0	NR_033141	629678.0	Mm.390721	NM_001037935	ENSMUSG00000067973	Gm6994	EG629678	predicted gene 6994	ncRNA	1.24766378614894	1.29559451105165	1.6729969256969	1.06881881327066	1.53208646177596	0.744855365027665	0.732541932592812	0.721910452736589	-1.40526034843415	0.341475717338676	0.842547091437367
Merged-chr2-153741211-4	chr2	153741119	153741319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007896)	promoter-TSS (NM_007896)	-68.0	NM_007896	13589.0	Mm.143877	NM_007896	ENSMUSG00000027479	Mapre1	5530600P05Rik|AI462499|AI504412|AW260097|BIM1p|D2Ertd459e|Eb1	microtubule-associated protein, RP/EB family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4678711-2	chr16	4678611	4678811	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030205, intron 1 of 27)	intron (NM_030205, intron 1 of 27)	1009.0	NM_030205	78885.0	Mm.325512	NM_030205	ENSMUSG00000039637	Coro7	0610011B16Rik|AW048373|AW556392	coronin 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-102189665-1	chr2	102189565	102189765	+	825.333313	f0_balb.idr	Intergenic	Intergenic	-3205.0	NM_001290784	241576.0	Mm.489740	NM_178886	ENSMUSG00000048058	Ldlrad3	6430500P08|AI194318|Lrad3	low density lipoprotein receptor class A domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-86611119-2	chr4	86611019	86611219	+	820.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173400, intron 1 of 16)	B1_Mus1|SINE|Alu	936.0	NM_173400	230376.0	Mm.74730	NM_173400	ENSMUSG00000038047	Haus6	6230416J20Rik|9830144E06|D4Ertd27e|mKIAA1574	HAUS augmin-like complex, subunit 6	protein-coding	-0.464215742150094	-0.274933418614616	-0.155364834115033	-0.460024019744084	-0.463594419988912	-0.45341899915129	-0.0265672460726191	-0.306057070188741	0.377601918910714	0.877781293289412	1
Merged-chr11-99574216-2	chr11	99574116	99574316	+	825.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR50|LTR|ERVL	6800.0	NM_027157	69664.0	Mm.38303	NM_027157	ENSMUSG00000047253	Krtap1-5	2310043L02Rik|AI592983	keratin associated protein 1-5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150220814-4	chr4	150220712	150220912	+	886.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16385.0	NM_023119	13806.0	Mm.70666	NM_023119	ENSMUSG00000063524	Eno1	0610008I15|AL022784|Eno-1|MBP-1	enolase 1, alpha non-neuron	protein-coding	-1.56355737717652	-1.81244775989375	-1.82128546162293	-1.82854501295842	-1.83962066705452	-1.81053259306168	-1.81928479966835	-1.82724555674025	-1.28500227969968	0.715751224811686	1
Merged-chr8-10848292-4	chr8	10848207	10848407	+	957.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34147.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-64727071-2	chr1	64726971	64727171	+	596.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10679.0	NM_001042659	14367.0	Mm.150813	NM_022721	ENSMUSG00000045005	Fzd5	5330434N09Rik|AI427138|Fz-5|Fz5|mFz5	frizzled class receptor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-94955292-4	chr8	94955213	94955413	+	990.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-21796.0	NM_001198894	14766.0	Mm.290834	NM_018882	ENSMUSG00000031785	Adgrg1	Cyt28|Gpr56|TM7LN4|TM7XN1	adhesion G protein-coupled receptor G1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-132342391-2	chr1	132342291	132342491	+	766.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25557.0	NM_001311108	68875.0	Mm.273785	NM_178874	ENSMUSG00000042066	Tmcc2	1110063G11Rik	transmembrane and coiled-coil domains 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-27538789-2	chr7	27538689	27538889	+	646.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001317355, intron 9 of 13)	intron (NM_001317355, intron 9 of 13)	14429.0	NM_011116	18807.0	Mm.6483	NM_011116	ENSMUSG00000003363	Pld3	Sam-9	phospholipase D family, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-79533838-4	chr10	79533760	79533960	+	997.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302442)	promoter-TSS (NM_001302442)	-73.0	NM_001302389	50784.0	Mm.28873	NM_015817	ENSMUSG00000052151	Plpp2	Lpp2|PAP2-G|PAP2-gamma|PAP2c|Ppap2c	phospholipid phosphatase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44881438-4	chr9	44881333	44881533	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357549)	promoter-TSS (NM_001357549)	-159.0	NM_001081049	214162.0	Mm.2389	NM_001081049	ENSMUSG00000002028	Kmt2a	6430520K01|ALL-1|All1|Cxxc7|HRX|HTRX1|Mll|Mll1|mKIAA4050	lysine (K)-specific methyltransferase 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-62523270-2	chr5	62523170	62523370	+	645.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	242907.0	NM_178407	212285.0	Mm.244403	NM_178407	ENSMUSG00000037999	Arap2	Centd1|Gm148|mKIAA0580	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3724114-2	chr19	3724014	3724214	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	15703.0	NM_001358257	72056.0	Mm.23780	NM_028077	ENSMUSG00000035372	1810055G02Rik	AI256204	RIKEN cDNA 1810055G02 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100932884-4	chr7	100932759	100932959	+	907.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081116)	promoter-TSS (NM_001081116)	-698.0	NM_001081116	207212.0	Mm.29954	NM_001081116	ENSMUSG00000032875	Arhgef17	8030463K16|AI428794|AW558066|BC035332|mKIAA0337	Rho guanine nucleotide exchange factor (GEF) 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166181134-6	chr2	166181003	166181203	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25420.0	NM_028072	72043.0	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64326332-7	chr5	64326131	64326331	+	731.428589	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 14 of 18)	intron (NM_001289514, intron 14 of 18)	95874.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-38440023-4	chr18	38439919	38440119	+	813.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355749, intron 1 of 7)	intron (NM_001355749, intron 1 of 7)	21112.0	NM_001355749	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-117314003-4	chr2	117313901	117314101	+	934.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011246, intron 2 of 16)	intron (NM_011246, intron 2 of 16)	28876.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-52204526-4	chr6	52204425	52204625	+	965.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010453)	promoter-TSS (NM_010453)	62.0	NM_010453	15402.0	Mm.173	NM_010453	ENSMUSG00000038253	Hoxa5	Hox-1.3	homeobox A5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-95532417-4	chr10	95532292	95532492	+	951.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080560, intron 1 of 3)	intron (NM_080560, intron 1 of 3)	17230.0	NM_080560	93765.0	Mm.371667	NM_080560	ENSMUSG00000074781	Ube2n	1500026J17Rik|AL022654|BB101821|UBC13	ubiquitin-conjugating enzyme E2N	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-21908202-2	chr16	21908102	21908302	+	619.400024	f1_balb.idr|f1_c57bl6.idr	intron (NM_172821, intron 6 of 12)	Lx5c|LINE|L1	16233.0	NM_172821	71751.0	Mm.420837	NM_172821	ENSMUSG00000033618	Map3k13	C130026N12Rik|LZK	mitogen-activated protein kinase kinase kinase 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-8801124-5	chr17	8801026	8801226	+	859.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011866)	promoter-TSS (NM_011866)	-619.0	NM_011866	23984.0	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-46680974-4	chr17	46680866	46681066	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027910)	promoter-TSS (NM_027910)	-20.0	NR_102392	17256.0	Mm.329083	NM_010787	ENSMUSG00000002768	Mea1	Mea-1	male enhanced antigen 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-22002768-4	chr9	22002684	22002884	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029939)	promoter-TSS (NM_029939)	-150.0	NM_029939	77609.0	Mm.159953	NM_029939	ENSMUSG00000039632	Ccdc151	AI644415|C330001K17Rik|b2b1885Clo	coiled-coil domain containing 151	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-109985619-4	chr9	109985529	109985729	+	929.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205332, intron 2 of 17)	intron (NM_001205332, intron 2 of 17)	53855.0	NM_008633	17758.0	Mm.217318	NM_008633	ENSMUSG00000032479	Map4	AA407148|MAP-4|Mtap-4|Mtap4	microtubule-associated protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135568746-4	chr5	135568709	135568909	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	4240.0	NM_019577	56221.0	Mm.31505	NM_019577	ENSMUSG00000004814	Ccl24	CKb-6|MPIF-2|Scya24	chemokine (C-C motif) ligand 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-114260600-4	chr2	114260510	114260710	+	921.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59178.0	NM_175466	228491.0	Mm.132523	NM_175466	ENSMUSG00000040321	Zfp770	6430601A21Rik|Znf770	zinc finger protein 770	protein-coding	2.30138527768462	1.37024190427494	1.09166900643953	1.07281691288423	1.91963498828248	2.27676766315383	2.09219624469619	1.79094013637527	1.20225695307057	0.296015135062787	0.798938452555064
Merged-chr1-132417802-1	chr1	132417702	132417902	+	841.0	f1_c57bl6.idr	exon (NM_172516, exon 1 of 13)	exon (NM_172516, exon 1 of 13)	349.0	NM_172516	213452.0	Mm.257120	NM_172516	ENSMUSG00000042046	Dstyk	A930019K20Rik|C430014H23Rik|C820013G01|Ripk5	dual serine/threonine and tyrosine protein kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-34254595-4	chr19	34254486	34254686	+	741.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007392, intron 1 of 8)	intron (NM_007392, intron 1 of 8)	787.0	NM_007392	11475.0	Mm.213025	NM_007392	ENSMUSG00000035783	Acta2	0610041G09Rik|Actvs|SMAalpha|SMalphaA|a-SMA|alphaSMA	actin, alpha 2, smooth muscle, aorta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165954429-2	chr2	165954328	165954528	+	708.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-38209.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	-2.18233058068552	-2.15536956715525	-2.16352280018114	-2.04193253143548	-2.18043796738662	-2.15360272754651	-2.16167708693786	-2.16902129354933	-0.683654500252594	0.846597994014493	1
Merged-chr18-35119005-4	chr18	35118948	35119148	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009818, intron 1 of 17)	CpG	136.0	NM_009818	12385.0	Mm.18962	NM_009818	ENSMUSG00000037815	Ctnna1	2010010M04Rik|AA517462|AI988031|Catna1	catenin (cadherin associated protein), alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-92822645-2	chr16	92822545	92822745	+	691.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111022, intron 2 of 6)	intron (NM_001111022, intron 2 of 6)	3429.0	NM_001111021	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-96460240-4	chr15	96460170	96460370	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028148, intron 1 of 14)	CpG	573.0	NM_028148	72193.0	Mm.324474	NM_028148	ENSMUSG00000033228	Scaf11	1110061H03Rik|2610510E10Rik|AI462454|CASP11|SIP1|SRRP129|Sfrs2ip|Srsf2ip|mKIAA3013	SR-related CTD-associated factor 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47175003-5	chr17	47174895	47175095	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001097623, intron 3 of 19)	intron (NM_001097623, intron 3 of 19)	34053.0	NM_001097623	224829.0	Mm.260989	NM_172622		Trerf1	9430096I18Rik|AI429294|B830015H24|RAPA|Trep-132|Trep132	transcriptional regulating factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-92352984-2	chr13	92352896	92353096	+	818.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001311120, intron 2 of 23)	(CA)n|Simple_repeat|Simple_repeat	-1787.0	NM_010049	13361.0	Mm.23695	NM_010049	ENSMUSG00000021707	Dhfr	8430436I03Rik|AA607882|AI662710|AW555094	dihydrofolate reductase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-90254368-2	chr9	90254268	90254468	+	896.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 1 of 12)	B4|SINE|B4	16401.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129617363-2	chr2	129617357	129617557	+	738.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355158, intron 5 of 8)	MIR3|SINE|MIR	21995.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-46266068-2	chr17	46265968	46266168	+	891.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252475, intron 1 of 8)	intron (NM_001252475, intron 1 of 8)	11903.0	NM_001111142	224813.0	Mm.70999	NM_001111142	ENSMUSG00000071073	Lrrc73	Gm88	leucine rich repeat containing 73	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70473417-2	chr11	70473317	70473517	+	979.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13433.0	NM_023158	66102.0	Mm.425692	NM_023158	ENSMUSG00000018920	Cxcl16	0910001K24Rik|AV290116|BB024863|CXCL16v1|CXCL16v2|SR-PSOX|Zmynd15|b2b498Clo	chemokine (C-X-C motif) ligand 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6047623-2	chr19	6047523	6047723	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164709, intron 1 of 15)	intron (NM_001164709, intron 1 of 15)	478.0	NM_001164709	74126.0	Mm.149870	NM_028769	ENSMUSG00000024807	Syvn1	1200010C09Rik|AW211966|C85322|D530017H19Rik|Hrd1	synovial apoptosis inhibitor 1, synoviolin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-136464133-11	chr6	136464008	136464208	+	925.93335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	4.5SRNA|scRNA|scRNA	-48539.0	NM_001201390	100502936.0	Mm.21182	NM_001201390	ENSMUSG00000045291	E330021D16Rik	C85549	RIKEN cDNA E330021D16 gene	protein-coding	3.24116995328973	3.10218550825303	2.98904566476019	4.54266319674442	4.01051416027363	3.58347113356576	3.14160445426706	4.52740465392646	0.38442159480736	0.516251344743934	0.947575262759467
Merged-chr5-59723110-2	chr5	59723010	59723210	+	952.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	262892.0	NR_040683	71057.0	Mm.50817	NR_040682	ENSMUSG00000106013	4933402J10Rik	-	RIKEN cDNA 4933402J10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-33195802-2	chr14	33195702	33195902	+	564.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10736.0	NM_001146022	545030.0	Mm.318345	NM_001146022	ENSMUSG00000051506	Wdfy4	Gm18810	WD repeat and FYVE domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-37910415-2	chr18	37910315	37910515	+	884.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001305980, intron 1 of 27)	intron (NM_001305980, intron 1 of 27)	25061.0	NM_001305981	13367.0	Mm.195916	NM_007858	ENSMUSG00000024456	Diaph1	D18Wsu154e|Dia1|Diap1|Drf1|p140mDia	diaphanous related formin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34593148-2	chr17	34593048	34593248	+	838.9285890000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_017463, intron 1 of 8)	intron (NM_017463, intron 1 of 8)	677.0	NM_017463	18515.0	Mm.390957	NM_017463	ENSMUSG00000034673	Pbx2	AU043397|G17	pre B cell leukemia homeobox 2	protein-coding	0.505825833211133	0.348117113509837	0.572960435078783	1.6602757980313	0.309135707731479	1.50012936475287	0.337804789962624	0.326207986728495	-0.566654022268909	0.748027809672319	0.998431161219273
Merged-chr9-110732797-4	chr9	110732666	110732866	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083936, intron 1 of 13)	GC_rich|Low_complexity|Low_complexity	9844.0	NM_001083936	19228.0	Mm.3542	NM_011199	ENSMUSG00000032492	Pth1r	PPR|Pthr|Pthr1	parathyroid hormone 1 receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-69382840-4	chr17	69382752	69382952	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356283)	promoter-TSS (NM_001356283)	-323.0	NM_001356283	22666.0	Mm.29434	NM_009547	ENSMUSG00000049672	Zbtb14	ZF5|Zfp161|b2b1982Clo	zinc finger and BTB domain containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33745614-4	chr16	33745490	33745690	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175256, intron 10 of 14)	intron (NM_175256, intron 10 of 14)	-48447.0	NM_010739	17063.0	Mm.3177	NM_010739	ENSMUSG00000022824	Muc13	114/A10|14/A10|AI159736|Lrrp|Ly64|NJ-1	mucin 13, epithelial transmembrane	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-23376333-4	chr16	23376228	23376428	+	901.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52805.0	NM_001004151	239766.0	Mm.208751	NM_001004151	ENSMUSG00000033383	Rtp1	Gm1766|Gm604	receptor transporter protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27623545-4	chr17	27623453	27623653	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019837)	promoter-TSS (NM_019837)	-101.0	NM_019837	56409.0	Mm.144699	NM_019837	ENSMUSG00000024213	Nudt3	1110011B09Rik|AA960325|Dipp|Dipp1	nudix (nucleotide diphosphate linked moiety X)-type motif 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-29228366-4	chr7	29228265	29228465	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033525, intron 1 of 2)	intron (NM_001033525, intron 1 of 2)	4157.0	NM_001033525	52150.0	Mm.24877	NM_001033525	ENSMUSG00000046410	Kcnk6	D7Ertd764e|Toss|Twik2	potassium inwardly-rectifying channel, subfamily K, member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-72919449-7	chr17	72919318	72919518	+	851.5476070000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029999, intron 1 of 2)	CpG	1113.0	NM_029999	77889.0	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171109982-2	chr1	171109877	171110077	+	670.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11684.0	NM_001081275	75472.0	Mm.32760	NM_029301	ENSMUSG00000026649	Cfap126	1700009P17Rik|AV282292|Flattop|Fltp	cilia and flagella associated protein 126	protein-coding	0.659499378975597	0.908175613723236	0.310556493394033	0.715873809949634	0.560981966117218	0.318153077755499	0.311922578891814	0.602976105642627	-1.42864806289164	0.426678183896196	1
Merged-chr17-31801025-3	chr17	31800917	31801117	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	54787.0	NM_010831	17691.0	Mm.290941	NM_010831	ENSMUSG00000024042	Sik1	Hrt-20|Msk|Sik|Sik-1|Snf1lk	salt inducible kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-76406222-2	chr12	76406122	76406322	+	720.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_008301, exon 1 of 1)	exon (NM_008301, exon 1 of 1)	1852.0	NM_008301	15512.0	Mm.296181	NM_008301	ENSMUSG00000059970	Hspa2	70kDa|HSP70.2|HSP70A2|Hsp70-2	heat shock protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95987163-4	chr3	95987140	95987340	+	987.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_045872)	TTS (NR_045872)	1730.0	NR_045872	668224.0	Mm.357766	NR_045872		Gm9054	EG668224	predicted gene 9054	ncRNA	-1.06932346315282	-1.04545378193536	-0.220844647149311	-1.06494782147003	-1.06867040657128	-1.04264807175102	-1.05547001227371	-1.06448932552894	-3.08190232315036	0.346744811462451	1
Merged-chr2-4517789-3	chr2	4517690	4517890	+	849.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 7 of 23)	intron (NM_001177843, intron 7 of 23)	-41964.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-68875010-4	chr11	68874917	68875117	+	877.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13536.0	NM_177060	320040.0	Mm.305696	NM_177060	ENSMUSG00000046490	Rnf222	9930039A11Rik	ring finger protein 222	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78915912-4	chr15	78915859	78916059	+	931.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020271, intron 1 of 1)	intron (NM_020271, intron 1 of 1)	2040.0	NM_020271	57028.0	Mm.263169	NM_020271	ENSMUSG00000116165	Pdxp	1600027H05Rik|AB041662|PLPP	pyridoxal (pyridoxine, vitamin B6) phosphatase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-76503286-3	chr14	76503195	76503395	+	900.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310647)	promoter-TSS (NM_001310647)	-931.0	NM_001310647	21807.0	Mm.153272	NM_009366	ENSMUSG00000022010	Tsc22d1	AA589566|AW105905|Egr5|TSC-22|Tgfb1i4|Tsc|Tsc22	TSC22 domain family, member 1	protein-coding	-0.832188958364422	-0.618511319463112	-0.964059773503351	-0.673346906158862	-0.968778801449186	-0.951440609689189	-0.962846925247479	-0.965678418899191	-2.76437392167494	0.337039568744368	1
Merged-chr3-94811439-2	chr3	94811339	94811539	+	835.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19C|LTR|ERVK	-24924.0	NM_001037711	70737.0	Mm.87634	NM_001037711	ENSMUSG00000068876	Cgn	6330408J11Rik	cingulin	protein-coding	0.492698942526066	0.441233138902176	0.25370288269967	0.650872975139948	0.697879231290527	0.260658842540814	0.254952742886563	0.759857101360503	0.35864378993559	0.845802512126192	1
Merged-chr1-150375529-1	chr1	150375429	150375629	+	675.0	f0_balb.idr	exon (NM_145511, exon 10 of 14)	exon (NM_145511, exon 10 of 14)	-17309.0	NM_133780	108989.0	Mm.174256	NM_133780	ENSMUSG00000006005	Tpr	2610029M07Rik|C77892	translocated promoter region, nuclear basket protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-109213119-3	chr13	109213094	109213294	+	886.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011056, intron 3 of 16)	intron (NM_011056, intron 3 of 16)	-111550.0	NR_030644	100124489.0		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-99211837-4	chr4	99211737	99211937	+	979.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175029, intron 1 of 10)	intron (NM_175029, intron 1 of 10)	17690.0	NM_001145967	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	2.24108971250984	2.72605646526226	2.17787728153236	2.46537063932492	2.68430524654901	1.70593726926137	2.74538078327171	1.61358670650805	-0.240099336923	0.784765151186771	0.998431161219273
Merged-chr16-91415743-7	chr16	91415633	91415833	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008349, intron 4 of 6)	intron (NM_008349, intron 4 of 6)	9498.0	NM_008349	16155.0	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19768263-2	chr7	19768163	19768363	+	758.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_020486, intron 2 of 14)	intron (NM_020486, intron 2 of 14)	2269.0	NM_020486	57278.0	Mm.29236	NM_020486	ENSMUSG00000002980	Bcam	1200005K12Rik|B-CAM|Gplu|Lu	basal cell adhesion molecule	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129370369-7	chr2	129370295	129370495	+	953.4285890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008361, intron 1 of 6)	intron (NM_008361, intron 1 of 6)	493.0	NR_015474	329514.0	Mm.207315	NM_177848	ENSMUSG00000074805	Il1bos	9430083I22|Gm14047	interleukin 1 beta, opposite strand	ncRNA	2.99559079357811	3.15932263892837	3.4028371740903	3.23500636189827	2.51336212742329	3.18207676642677	3.17614208736829	3.25106026496175	-0.252271289481576	0.678890552971686	0.99525161242239
Merged-chr4-149856558-3	chr4	149856453	149856653	+	772.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-82286.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-38199623-1	chr7	38199523	38199723	+	545.0	f1_c57bl6.idr	Intergenic	Intergenic	15836.0	NM_028166	72244.0	Mm.187554	NM_028166		1600014C10Rik	AI428873	RIKEN cDNA 1600014C10 gene	protein-coding	0.853400740242759	0.253581378459566	0.417575757899358	0.652470003688748	0.700352940512797	0.254918806035186	0.422347414396873	0.243883852371663	-0.96908231352338	0.601998850754894	1
Merged-chr10-80883258-2	chr10	80883158	80883358	+	657.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081688, intron 2 of 17)	intron (NM_001081688, intron 2 of 17)	3442.0	NM_001081688	432478.0	Mm.235302	NM_001081688	ENSMUSG00000059406	Tmprss9	Serase-1B	transmembrane protease, serine 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-100105971-2	chr12	100105871	100106071	+	813.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6360.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-129670126-4	chr5	129670039	129670239	+	817.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172462)	promoter-TSS (NM_172462)	-51.0	NM_172462	22648.0	Mm.135067	NM_172462	ENSMUSG00000051034	Zfp11	6720465D24|Krox-6|Zfp-11	zinc finger protein 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-76900473-7	chr8	76900416	76900616	+	905.9285890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_028579, exon 1 of 2)	non-coding (NR_028579, exon 1 of 2)	105.0	NR_028579	102640923.0	Mm.367571	NR_028579	ENSMUSG00000074235	Gm10649	-	predicted gene 10649	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-64534108-4	chr1	64534011	64534211	+	849.008301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037726, intron 1 of 6)	intron (NM_001037726, intron 1 of 6)	1307.0	NM_001037726	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-116483885-3	chr3	116483791	116483991	+	752.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	24284.0	NM_025517	66368.0	Mm.251228	NM_025517	ENSMUSG00000000339	Rtca	2310009A18Rik|AI450277|RPC|Rtcd1	RNA 3'-terminal phosphate cyclase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-55473616-2	chr12	55473516	55473716	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19031.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28329383-3	chr17	28329268	28329468	+	887.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357628, intron 3 of 5)	intron (NM_001357628, intron 3 of 5)	803.0	NM_001357628	19896.0	Mm.336955	NM_011287	ENSMUSG00000037805	Rpl10a	CsA-19|Nedd6	ribosomal protein L10A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-120609393-4	chr2	120609313	120609513	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025475)	promoter-TSS (NM_025475)	31.0	NM_025475	66296.0	Mm.221900	NM_025475	ENSMUSG00000027285	Haus2	1700101G24Rik|2410007P03Rik|AU020217|Cep27	HAUS augmin-like complex, subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55586534-2	chr14	55586434	55586634	+	845.75	f1_balb.idr|f1_c57bl6.idr	TTS (NM_011190)	TTS (NM_011190)	-1280.0	NM_033146	85308.0	Mm.40667	NM_033146	ENSMUSG00000022217	Emc9	1500005A01Rik|Cgi112|Fam158a	ER membrane protein complex subunit 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-60963681-2	chr18	60963581	60963781	+	764.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_009792, exon 1 of 7)	5' UTR (NM_009792, exon 1 of 7)	127.0	NM_001286809	12322.0	Mm.131530	NM_009792	ENSMUSG00000024617	Camk2a	CaMKII|R74975|mKIAA0968	calcium/calmodulin-dependent protein kinase II alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59415156-2	chr15	59415056	59415256	+	911.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164604, intron 2 of 4)	intron (NM_001164604, intron 2 of 4)	40958.0	NM_001164604	68501.0	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-6471314-1	chr8	6471214	6471414	+	612.0	f1_balb.idr	Intergenic	RMER20B|LTR|ERVK	-1366027.0	NM_011388	20494.0	Mm.3500	NM_011388	ENSMUSG00000023073	Slc10a2	9130221J18Rik|AI605518|ASBT|IBAT|ISBT	solute carrier family 10, member 2	protein-coding	-0.325362365868358	-0.312861254591799	-0.316967204308832	-0.160170424030066	0.143752775372931	-0.311934315790842	-0.316062476882376	0.30091095564122	2.77290371990038	0.261639604398025	1
Merged-chr5-135456659-2	chr5	135456559	135456759	+	902.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146001, intron 4 of 30)	B1_Mur2|SINE|Alu	-62113.0	NM_148932	107939.0	Mm.28399	NM_148932	ENSMUSG00000053293	Pom121	2610027A18Rik|C80273|mKIAA0618	nuclear pore membrane protein 121	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-99241825-4	chr6	99241731	99241931	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001197321, intron 2 of 17)	intron (NM_001197321, intron 2 of 17)	24684.0	NM_001197321	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-87553801-3	chr6	87553730	87553930	+	679.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20571.0	NM_001286610	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-21712062-4	chr10	21711947	21712147	+	804.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21202.0	NR_045843	432436.0	Mm.244553	NM_001004162	ENSMUSG00000056716	Gm5420	EG432436	predicted gene 5420	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-116509240-2	chr13	116509140	116509340	+	680.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-199552.0	NM_021459	16392.0	Mm.42242	NM_021459	ENSMUSG00000042258	Isl1	-	ISL1 transcription factor, LIM/homeodomain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-74672650-4	chr15	74672558	74672758	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001276684)	promoter-TSS (NM_001276684)	-88.0	NM_018790	11838.0	Mm.491310	NM_018790	ENSMUSG00000022602	Arc	Arc3.1|C86064|arg3.1|mArc	activity regulated cytoskeletal-associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-56684434-1	chr13	56684334	56684534	+	597.5	f1_balb.idr	Intergenic	Intergenic	-18576.0	NM_008541	17129.0	Mm.272920	NM_008541	ENSMUSG00000021540	Smad5	1110051M15Rik|AI451355|Dwf-C|Madh5|MusMLP	SMAD family member 5	protein-coding	-1.8418762459921	-1.8125357239735	-1.82140854000656	-1.82869693527674	-1.56059678980999	-1.8106129477253	-1.81939992894326	-1.82739231600805	1.3620893379502	0.699511506488145	1
Merged-chr7-142457787-2	chr7	142457696	142457896	+	728.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4|SINE|ID	-3016.0	NM_001271510	16985.0	Mm.234003	NM_019391	ENSMUSG00000018819	Lsp1	Lsp-1|WP34|p50|pp52	lymphocyte specific 1	protein-coding	0.482521028785441	1.67412233981302	1.19170184992017	0.70389430822999	0.485016200667784	1.26364822442686	0.511617497367672	0.708005674199072	-1.36013196536374	0.39996114030076	0.885176145862419
Merged-chr9-108499571-2	chr9	108499471	108499671	+	600.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001168373, intron 23 of 26)	intron (NM_001168373, intron 23 of 26)	-8434.0	NM_133794	97541.0	Mm.272427	NM_133794	ENSMUSG00000032604	Qars	1110018N24Rik|1200016L19Rik|C80286|GLNRS	glutaminyl-tRNA synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-80206825-4	chr17	80206716	80206916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360435, intron 1 of 6)	CpG	489.0	NM_001195486	225027.0	Mm.292016	NM_146083	ENSMUSG00000024097	Srsf7	35kDa|9430065L19Rik|9G8|NX-96|Sfrs7	serine/arginine-rich splicing factor 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-8716990-3	chr11	8716918	8717118	+	559.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52483.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80849934-4	chr7	80849812	80850012	+	938.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12196.0	NM_009553	22691.0	Mm.358645	NM_009553	ENSMUSG00000038797	Zscan2	Zfp-29|Zfp29	zinc finger and SCAN domain containing 2	protein-coding	1.28698525878087	1.4820348425381	0.689740380741135	0.681052758248018	1.29982323026598	0.703376908307467	1.05773120005094	1.27504094895043	0.0573704237094587	0.969847397570776	0.998431161219273
Merged-chr16-50529003-4	chr16	50528925	50529125	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040379, intron 1 of 5)	CpG	523.0	NR_040379	619312.0	Mm.427671	NR_040379		G730013B05Rik	linc-Cblb|linc1610	RIKEN cDNA G730013B05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-45235017-2	chr19	45234917	45235117	+	790.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_010691, exon 1 of 2)	exon (NM_010691, exon 1 of 2)	219.0	NM_010691	16814.0	Mm.116815	NM_010691	ENSMUSG00000025216	Lbx1	Lbx1h	ladybird homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67998201-3	chr10	67998117	67998317	+	919.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359319, intron 3 of 11)	intron (NM_001359319, intron 3 of 11)	18647.0	NM_001359319	170799.0	Mm.209844	NM_133244	ENSMUSG00000037846	Rtkn2	B130039D23Rik|Mbf|Plekhk1	rhotekin 2	protein-coding	0.665922750226117	1.86613062822167	0.696410655067368	0.890657715495991	1.14539661684544	0.953407832721383	1.10507531144448	1.65056078009886	0.319608547318388	0.822972801832493	0.998431161219273
Merged-chr2-69676892-3	chr2	69676792	69676992	+	813.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081087, intron 3 of 5)	B2_Mm2|SINE|B2	6772.0	NM_001081087	228003.0	Mm.178784	NM_001081087	ENSMUSG00000075307	Klhl41	Gm112|Kbtbd10|SARCOSIN	kelch-like 41	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-64599975-1	chr18	64599875	64600075	+	771.0	f0_balb.idr	intron (NM_001001488, intron 2 of 27)	intron (NM_001001488, intron 2 of 27)	61025.0	NM_001001488	54670.0	Mm.270043	NM_001001488	ENSMUSG00000039529	Atp8b1	AI451886|FIC1|Ic	ATPase, class I, type 8B, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-117123888-2	chr4	117123791	117123991	+	636.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_024078, intron 2 of 6)	intron (NR_024078, intron 2 of 6)	1834.0	NR_024078	78611.0	Mm.446227	NM_001033187		Btbd19	9530048O09Rik|BB115071	BTB (POZ) domain containing 19	ncRNA	-0.236232762700291	-0.177146287827218	-0.0571516534624479	-0.363656950162808	0.16406163283071	-0.356492266330039	-0.360107536760312	-0.3631758918404	0.0510327323025595	0.98292222928416	1
Merged-chr9-65537306-2	chr9	65537206	65537406	+	649.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42781.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-58567289-4	chr18	58567188	58567388	+	979.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081072, intron 1 of 9)	Lx7|LINE|L1	11048.0	NM_001081072	225579.0	Mm.258517	NM_001081072	ENSMUSG00000024600	Slc27a6	4732438L20Rik|FACVL2|FATP6|VLCS-H1	solute carrier family 27 (fatty acid transporter), member 6	protein-coding	0.637790422968642	0.679276875577753	1.55708895678831	0.655509729845614	1.58355650268497	0.682244460430107	1.46776888907007	1.29891681281187	1.35301451727776	0.396607254058663	0.883358600789196
Merged-chr14-66931773-3	chr14	66931657	66931857	+	925.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20549.0	NM_175498	239157.0	Mm.44358	NM_175498	ENSMUSG00000046204	Pnma2	A830049P17Rik|mKIAA0883	paraneoplastic antigen MA2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-69526470-5	chr13	69526322	69526522	+	957.23999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198600, intron 1 of 12)	intron (NM_198600, intron 1 of 12)	7442.0	NM_198600	210106.0	Mm.315959	NM_198600	ENSMUSG00000034575	Papd7	LAK-1|POLK|Pols|TRF4|TRF4-1	PAP associated domain containing 7	protein-coding	3.83188006167317	4.02804852500005	3.83418473369963	3.24840188321218	3.57287897994874	2.66020632941563	4.05079924305033	3.99027431027859	-0.123607403810865	0.818317836598622	0.998431161219273
Merged-chr12-34513354-2	chr12	34513254	34513454	+	581.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271386, intron 4 of 27)	intron (NM_001271386, intron 4 of 27)	15535.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-79030823-4	chr15	79030743	79030943	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161712)	promoter-TSS (NM_001161712)	-31.0	NM_013847	26912.0	Mm.237085	NM_013847	ENSMUSG00000006378	Gcat	AI526977|Kbl	glycine C-acetyltransferase (2-amino-3-ketobutyrate-coenzyme A ligase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-122246613-2	chr3	122246513	122246713	+	655.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008129, intron 1 of 6)	ID_B1|SINE|B4	1056.0	NM_008129	14630.0	Mm.292676	NM_008129	ENSMUSG00000028124	Gclm	AI649393|Gcmc|Glclr	glutamate-cysteine ligase, modifier subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-103900192-4	chr13	103900098	103900298	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005868, intron 1 of 26)	B4A|SINE|B4	20388.0	NM_001289473	59079.0	Mm.277354	NM_021563	ENSMUSG00000021709	Erbin	1700028E05Rik|Erbb2ip|mKIAA1225	Erbb2 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-8835214-2	chr4	8835114	8835314	+	658.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355382, intron 14 of 36)	intron (NM_001355382, intron 14 of 36)	83890.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-26978409-1	chr8	26978309	26978509	+	1000.0	f0_balb.idr	intron (NM_001110508, intron 2 of 2)	CpG-13923	1073.0	NM_001110508	353310.0	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90562252-2	chr2	90562146	90562346	+	650.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	18401.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	-2.18138529563533	-2.15523716995652	-2.1631445789866	-2.16963996020037	-2.05513010215571	-2.15352360143315	-2.16135451490766	-2.16847729006863	0.759018020146679	0.829933115115583	1
Merged-chr9-61424447-4	chr9	61424342	61424542	+	994.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	52076.0	NM_001083927	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-127136344-2	chr1	127136244	127136444	+	733.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68642.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-105353190-1	chr4	105353090	105353290	+	723.0	f0_balb.idr	Intergenic	Intergenic	195843.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-22675235-2	chr11	22675135	22675335	+	575.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	162952.0	NM_153596	103765.0	Mm.221274	NM_153596	ENSMUSG00000049904	Tmem17	AI503894|AW049890	transmembrane protein 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-45159921-2	chr16	45159821	45160021	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356366, intron 1 of 10)	intron (NM_001356366, intron 1 of 10)	1092.0	NM_026402	67841.0	Mm.41775	NM_026402	ENSMUSG00000022663	Atg3	2610016C12Rik|APG3|Apg3l|Atg3l|PC3-96	autophagy related 3	protein-coding	-1.31349849087795	-1.28274354783242	-1.29349452597086	-1.3023256995151	-1.3130151546297	-1.28041376602105	-0.694015972326031	-1.30074492367298	2.57396649482007	0.456321314346772	1
Merged-chr4-155839652-3	chr4	155839551	155839751	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024263)	promoter-TSS (NM_024263)	-29.0	NM_024263	74761.0	Mm.159028	NM_024263	ENSMUSG00000029070	Mxra8	1200013A08Rik|1700095D18Rik|AI131686|Asp3|Dicam	matrix-remodelling associated 8	protein-coding	2.29857978749852	1.97553376079891	2.34760080244081	3.07909788912606	4.09479792226708	3.31528090147364	3.9975938746998	4.20322900252546	2.341880848057	0.000182410534242725	0.00501623094990403
Merged-chr7-135650250-4	chr7	135650118	135650318	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015548, intron 2 of 2)	intron (NR_015548, intron 2 of 2)	-1681.0	NM_001316681	19267.0	Mm.945	NM_011212	ENSMUSG00000041836	Ptpre	PTPe|PTPepsilon|RPTPepsilon	protein tyrosine phosphatase, receptor type, E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-59011876-4	chr6	59011795	59011995	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153574, intron 1 of 17)	intron (NM_153574, intron 1 of 17)	12607.0	NM_153574	58909.0	Mm.28813	NM_153574	ENSMUSG00000037709	Fam13a	AI462012|D430015B01Rik|FAM13A1|Precm1	family with sequence similarity 13, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-34051813-4	chr13	34051669	34051869	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026512, intron 4 of 6)	intron (NM_026512, intron 4 of 6)	14128.0	NM_026512	68021.0	Mm.140243	NM_026512	ENSMUSG00000038286	Bphl	2010012D11Rik|5730533B08Rik|AI115341	biphenyl hydrolase-like (serine hydrolase, breast epithelial mucin-associated antigen)	protein-coding	3.77113344018652	3.8074340697997	3.23586138055226	4.06576400537002	4.04210033093145	2.83595837891557	3.46146836275524	3.80504256657463	-0.1932022157648	0.717327648386138	0.998431161219273
Merged-chr17-40904929-2	chr17	40904829	40905029	+	712.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001145060, exon 5 of 5)	exon (NM_001145060, exon 5 of 5)	9421.0	NM_001145060	435528.0	Mm.359622	NM_001145060	ENSMUSG00000091043	Glyatl3	EG435528|Gm5683	glycine-N-acyltransferase-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97364113-2	chr11	97364013	97364213	+	555.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_138657, intron 1 of 9)	intron (NM_138657, intron 1 of 9)	1562.0	NM_138657	192157.0	Mm.34339	NM_138657	ENSMUSG00000038485	Socs7	2310063P06Rik|C85125|Nap4	suppressor of cytokine signaling 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-10162425-2	chr8	10162325	10162525	+	788.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001319151, intron 1 of 34)	intron (NM_001319151, intron 1 of 34)	8514.0	NM_001319151	244281.0	Mm.422761	NM_001081397	ENSMUSG00000039057	Myo16	BM140241|C230040D10Rik|Gm1105|NYAP3|mKIAA0865	myosin XVI	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-87173124-1	chr3	87173024	87173224	+	685.0	f1_balb.idr	intron (NM_001170985, intron 1 of 15)	intron (NM_001170985, intron 1 of 15)	1623.0	NM_001170985	170643.0	Mm.89552	NM_130867	ENSMUSG00000041734	Kirrel	6720469N11Rik|Kirrel1|Neph1	kirre like nephrin family adhesion molecule 1	protein-coding	-1.00889295329784	-0.99108363469249	-1.00272438891682	-1.00550846905646	-1.00839030617611	-0.988561034691512	-0.541909310070216	-0.699179411987023	2.83733230312755	0.363951738899942	1
Merged-chr1-134092348-2	chr1	134092248	134092448	+	934.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13193.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-157913568-2	chr2	157913468	157913668	+	824.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1085.0	NM_198627	277432.0	Mm.441156	NM_198627	ENSMUSG00000037843	Vstm2l	Gm691	V-set and transmembrane domain containing 2-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47743528-1	chr17	47743428	47743628	+	639.0	f0_balb.idr	intron (NM_001161723, intron 1 of 8)	intron (NM_001161723, intron 1 of 8)	5597.0	NM_001161723	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-164943077-4	chr2	164942983	164943183	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5136.0	NM_013599	17395.0	Mm.4406	NM_013599	ENSMUSG00000017737	Mmp9	AW743869|B/MMP9|Clg4b|Gel B|MMP-9|pro-MMP-9	matrix metallopeptidase 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-14600146-2	chr19	14600046	14600246	+	579.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-1963.0	NM_001302947	21888.0	Mm.103638	NM_011600	ENSMUSG00000024642	Tle4	5730411M05Rik|AA792082|Bce-1|Bce1|ESTM13|ESTM14|Grg4|X83332|X83333|grg-4	transducin-like enhancer of split 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-5410555-3	chr12	5410458	5410658	+	666.333374	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015579, intron 1 of 1)	intron (NR_015579, intron 1 of 1)	34056.0	NR_015579	72669.0	Mm.10434	NM_028318		2810032G03Rik	AI461720	RIKEN cDNA 2810032G03 gene	ncRNA	2.95320416928446	2.84223962764736	3.7975756826023	3.57664800066814	2.88311376604087	3.52208969234343	2.76577503187169	3.59413288857887	-0.187158254561627	0.759535578704533	0.998431161219273
Merged-chr8-71674014-2	chr8	71673914	71674114	+	813.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2257.0	NM_001029873	382018.0	Mm.334606	NM_001029873	ENSMUSG00000034799	Unc13a	2410078G03Rik|Munc13-1	unc-13 homolog A (C. elegans)	protein-coding	-0.998708004169574	-1.23656917697027	-1.2467819647641	-1.2551710527351	-1.26296550373295	-1.23435602325169	-0.926385977887582	-1.25366940999922	0.276530546718458	0.935641945642945	1
Merged-chr1-131957922-3	chr1	131957813	131958013	+	930.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5002.0	NM_001177628	212980.0	Mm.200307	NM_145977	ENSMUSG00000026435	Slc45a3	2210413P12Rik|AU023994|AU043764|IPCA-6|PRST|Pcanap6	solute carrier family 45, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-145026929-3	chr3	145026824	145027024	+	892.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017474, intron 3 of 13)	intron (NM_017474, intron 3 of 13)	5852.0	NM_017474	23844.0	Mm.33483	NM_017474	ENSMUSG00000028255	Clca1	Clca2|Clca3|gob-5|gob5	chloride channel accessory 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-88280260-2	chr1	88280160	88280360	+	793.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2681.0	NM_198652	381280.0	Mm.384762	NM_198652	ENSMUSG00000044783	Hjurp	6430706D22Rik|A730008H23Rik|C330011F01Rik|Gm975|Mfleg1	Holliday junction recognition protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-79927839-4	chr15	79927746	79927946	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144811, intron 2 of 6)	CpG	4800.0	NM_144811	52609.0	Mm.323442	NM_144811	ENSMUSG00000053411	Cbx7	1600014J01Rik|AI851678|D15Ertd417e	chromobox 7	protein-coding	5.87709893699218	5.87871785225539	5.61203966466761	5.53007137246749	6.25032939598445	5.17422548044944	5.70144903915147	6.00771660658907	0.131176129414059	0.635157329917047	0.982417279970648
Merged-chr10-40138187-4	chr10	40138140	40138340	+	819.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 1 of 5)	intron (NM_001114332, intron 1 of 5)	4014.0	NM_028247	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-100421937-5	chr12	100421840	100422040	+	927.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033213, intron 5 of 19)	intron (NM_001033213, intron 5 of 19)	98882.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-36820738-3	chr8	36820667	36820867	+	658.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001194940, intron 4 of 17)	intron (NM_001194940, intron 4 of 17)	-87713.0	NM_001194941	50768.0	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	3.1080674643	3.34447265399675	2.45481292508321	3.33427370304049	2.78207384776813	1.49536493253939	1.44758531820181	2.63736579246898	-1.61771772539887	0.0552907421382194	0.345509543840811
Merged-chr11-57674078-3	chr11	57673985	57674185	+	687.333313	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	intron (NM_134189, intron 1 of 11)	intron (NM_134189, intron 1 of 11)	-24591.0	NR_153850	78762.0	Mm.362149	NR_153850		4933424L21Rik	-	RIKEN cDNA 4933424L21 gene	ncRNA	1.88150995027368	1.76879514606632	1.20396755838841	3.51595370192235	2.14767608293547	2.15261058156665	2.2181821218065	1.84668219538827	-0.750892346668731	0.450721637823514	0.916907738284681
Merged-chr15-64000172-1	chr15	64000072	64000272	+	589.0	f0_balb.idr	intron (NM_144846, intron 1 of 11)	MIR|SINE|MIR	-2106.0	NM_001360035	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67644415-4	chr10	67644301	67644501	+	969.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72442.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-82979360-2	chr18	82979260	82979460	+	560.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_183033, intron 2 of 5)	intron (NM_183033, intron 2 of 5)	-58800.0	NR_033307	75853.0	Mm.420737	NR_033307		4930592I03Rik	-	RIKEN cDNA 4930592I03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-95067730-4	chr8	95067600	95067800	+	819.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042715, intron 7 of 17)	intron (NM_001042715, intron 7 of 17)	12597.0	NM_001042715	330830.0	Mm.277112	NM_001042715	ENSMUSG00000031786	Drc7	Ccdc135|Gm770|SRG-L|SRG-S	dynein regulatory complex subunit 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-128707616-4	chr4	128707521	128707721	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018774, intron 2 of 14)	intron (NM_018774, intron 2 of 14)	18883.0	NM_018774	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-31284120-2	chr9	31284020	31284220	+	782.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12719.0	NM_001101597	638580.0	Mm.373655	NM_001101597		Gm7244	EG638580	predicted gene 7244	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-46335951-2	chr18	46335851	46336051	+	773.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-24023.0	NM_001160399	240261.0	Mm.329416	NM_001160399	ENSMUSG00000071855	Ccdc112	8430438M01Rik|AW108467	coiled-coil domain containing 112	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-126629310-2	chr3	126629219	126629419	+	756.5	f0_balb.idr|f1_c57bl6.idr	intron (NM_001025438, intron 2 of 18)	intron (NM_001025438, intron 2 of 18)	32368.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	0.0436149555201806	0.627970130378579	-0.225584788679715	-0.229565437691193	-0.23520651029779	-0.219280603247578	-0.224448495377281	0.0935847927317787	-2.07843498458235	0.383539556281879	1
Merged-chr16-33836808-4	chr16	33836707	33836907	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 1 of 14)	intron (NM_001145884, intron 1 of 14)	7142.0	NM_001145884	16419.0	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88415207-2	chr3	88415107	88415307	+	741.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145877, intron 2 of 2)	ID_B1|SINE|B4	-4810.0	NM_025928	67037.0	Mm.36715	NM_025928	ENSMUSG00000028066	Pmf1	2600009M07Rik|AL033286|AW060657	polyamine-modulated factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-99307777-2	chr11	99307671	99307871	+	580.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15170.0	NM_133730	70810.0	Mm.268173	NM_133730	ENSMUSG00000035831	Krt25	4631426H08Rik|Ka38|Krt25a|mIRSa1	keratin 25	protein-coding	2.77073229138936	2.14353538737375	2.35620679480284	2.02070142427605	2.49309858572088	2.88044747475106	1.91684005727446	2.4178319357165	0.240600921134356	0.769703064521449	0.998431161219273
Merged-chr13-42976312-4	chr13	42976222	42976422	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005740, intron 2 of 12)	MIR|SINE|MIR	110075.0	NM_001302636	218194.0	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	2.61276465968558	3.51483829019131	1.93693665687648	2.89584676739229	4.12615012135623	4.10363569556036	2.74427494569081	4.10733156006737	1.59143161787991	0.0134460203019319	0.134512522164462
Merged-chr1-60913344-6	chr1	60913227	60913427	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009843, exon 3 of 4)	exon (NM_009843, exon 3 of 4)	4302.0	NM_001281976	12477.0	Mm.390	NM_009843	ENSMUSG00000026011	Ctla4	Cd152|Ctla-4|Ly-56	cytotoxic T-lymphocyte-associated protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-128133847-4	chr7	128133751	128133951	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021334, intron 8 of 29)	intron (NM_021334, intron 8 of 29)	4283.0	NM_021334	16411.0	Mm.22378	NM_021334	ENSMUSG00000030789	Itgax	AI449405|Cd11c|Cr4|N418	integrin alpha X	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-51168212-3	chr6	51168132	51168332	+	874.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	101678.0	NR_029719	387166.0		NR_029719	ENSMUSG00000065505	Mir148a	Mirn148|Mirn148a|mir-148a	microRNA 148a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120050671-2	chr8	120050571	120050771	+	588.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_030209, exon 15 of 15)	3' UTR (NM_030209, exon 15 of 15)	50801.0	NM_133967	102193.0	Mm.240076	NM_133967	ENSMUSG00000031823	Zdhhc7	AL024087|Gramp2	zinc finger, DHHC domain containing 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101119982-4	chr11	101119889	101120089	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134024)	promoter-TSS (NM_134024)	-142.0	NM_134024	103733.0	Mm.479145	NM_134024	ENSMUSG00000035198	Tubg1	1500010O08Rik|AI451582|AI503389|Tubg	tubulin, gamma 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24477601-2	chr17	24477566	24477766	+	783.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_019988, intron 4 of 8)	intron (NM_019988, intron 4 of 8)	1412.0	NM_001252464	56716.0	Mm.289516	NM_019988	ENSMUSG00000024142	Mlst8	0610033N12Rik|AA409454|AI505104|AI851821|Gbl	MTOR associated protein, LST8 homolog (S. cerevisiae)	protein-coding	1.32567613141469	1.6164390194639	1.12602076415373	0.915922194958199	1.33608464917688	1.49601933320634	1.57159999186899	1.62780992094568	0.92235433458776	0.450244883759599	0.916531746750538
Merged-chr12-75721159-4	chr12	75721057	75721257	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030750, intron 2 of 2)	intron (NM_030750, intron 2 of 2)	14572.0	NM_030750	81535.0	Mm.280199	NM_030750	ENSMUSG00000021054	Sgpp1	AI463453|SPP|SPP1|Spph1	sphingosine-1-phosphate phosphatase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-92463181-2	chr5	92463081	92463281	+	620.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007644, intron 2 of 11)	intron (NM_007644, intron 2 of 11)	4624.0	NR_105843	102466159.0		NR_105843	ENSMUSG00000099160	Mir6415	Gm27714|mmu-mir-6415	microRNA 6415	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122911748-4	chr8	122911701	122911901	+	805.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 3 of 12)	intron (NM_001081379, intron 3 of 12)	63427.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24007648-4	chr17	24007577	24007777	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9577.0	NM_133731	70835.0	Mm.157351	NM_133731	ENSMUSG00000045027	Prss22	4733401N09Rik|BSSP-4|SP001LA	protease, serine 22	protein-coding	3.75581634916137	3.26130224872327	3.55695597279523	4.8133641283006	3.72716309382538	2.45110667457145	3.96748692658296	4.49600607464459	-0.20264479020391	0.732062259316969	0.998431161219273
Merged-chr12-8947476-2	chr12	8947376	8947576	+	813.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010770)	promoter-TSS (NM_010770)	-453.0	NM_010770	17182.0	Mm.42226	NM_010770	ENSMUSG00000020583	Matn3	AV009181	matrilin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-86754325-3	chr17	86754163	86754363	+	840.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010137, exon 1 of 16)	5' UTR (NM_010137, exon 1 of 16)	399.0	NM_010137	13819.0	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141416848-2	chr7	141416748	141416948	+	872.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2723.0	NM_172116	213350.0	Mm.290953	NM_172116	ENSMUSG00000051007	Gatd1	BC023835|D230016J19Rik|Pddc1	glutamine amidotransferase like class 1 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-108318851-4	chr4	108318759	108318959	+	976.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9293.0	NM_027250	69893.0	Mm.28354	NM_027250	ENSMUSG00000048351	Coa7	2010305A19Rik|AI451324|D4Ertd796e|Selrc1	cytochrome c oxidase assembly factor 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35937883-4	chr17	35937764	35937964	+	824.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9290.0	NR_028278	667766.0	Mm.29385	NR_028278		Gm8801	-	protein phosphatase 1, regulatory subunit 10 pseudogene	pseudo	2.59078622828423	2.77957630824013	2.53876128815191	3.62221092133794	3.00404872862527	3.44787009454532	3.25245383994107	3.38735198225639	0.524956881812669	0.411507427978566	0.894597257730009
Merged-chr19-43940194-4	chr19	43940085	43940285	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028029)	promoter-TSS (NM_028029)	13.0	NM_028029	71972.0	Mm.159024	NM_028029	ENSMUSG00000025195	Dnmbp	2410003L07Rik|2410003M15Rik|TUBA	dynamin binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-75669650-4	chr12	75669567	75669767	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028203)	promoter-TSS (NM_028203)	-130.0	NM_028203	72338.0	Mm.341719	NM_028203	ENSMUSG00000045690	Wdr89	2600001A11Rik	WD repeat domain 89	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-43790153-2	chr13	43790053	43790253	+	842.099976	f1_balb.idr|f1_c57bl6.idr	intron (NM_009856, intron 2 of 4)	intron (NM_009856, intron 2 of 4)	5041.0	NM_001289915	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-130773443-3	chr7	130773358	130773558	+	785.944458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081038)	promoter-TSS (NM_001081038)	-611.0	NM_001081038	330660.0	Mm.271550	NM_001081038	ENSMUSG00000040298	Btbd16	E330040A16Rik	BTB (POZ) domain containing 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-135659771-1	chr7	135659671	135659871	+	547.0	f1_c57bl6.idr	intron (NM_001316681, intron 4 of 17)	intron (NM_001316681, intron 4 of 17)	-7457.0	NR_015548	67765.0	Mm.445272	NR_015548	ENSMUSG00000097471	5830432E09Rik	-	RIKEN cDNA 5830432E09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-137865228-2	chr1	137865128	137865328	+	858.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-101227.0	NR_029795	735252.0		NR_029795	ENSMUSG00000065565	Mir181a-1	Mirn181a-1|Mirn213|miR-213|mir-181a-1|mmu-mir-213	microRNA 181a-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-38435136-1	chr16	38435036	38435236	+	541.0	f1_c57bl6.idr	Intergenic	MLTR25A|LTR|ERVK	-1991.0	NM_134102	85031.0	Mm.279805	NM_134102	ENSMUSG00000002847	Pla1a	AA986889|Ps-pla1|Pspla1	phospholipase A1 member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-3327543-4	chr2	3327445	3327645	+	998.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001290370, exon 12 of 12)	3' UTR (NM_001290370, exon 12 of 12)	5083.0	NM_001013376	227522.0	Mm.293948	NM_001013376	ENSMUSG00000049950	Rpp38	C330006A15Rik	ribonuclease P/MRP 38 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-6553869-2	chr15	6553769	6553969	+	698.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25978.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-80340132-6	chr1	80340026	80340226	+	987.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016716, intron 1 of 15)	intron (NM_016716, intron 1 of 15)	564.0	NM_001313728	26554.0	Mm.12665	NM_016716	ENSMUSG00000004364	Cul3	KIAA0617	cullin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-138085102-4	chr5	138085006	138085206	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029869)	promoter-TSS (NM_029869)	22.0	NM_029869	74570.0	Mm.213114	NM_029869	ENSMUSG00000029729	Zkscan1	5930429A01Rik|9130423L19Rik|9230118B16Rik|AI646829|AI788588|C87323|KOX18|PHZ-37|ZNF139	zinc finger with KRAB and SCAN domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-55459950-4	chr12	55459855	55460055	+	984.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32692.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-97070329-2	chr7	97070229	97070429	+	659.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11422.0	NM_001162477	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	-0.413164254490204	-0.396474370871613	-0.200159402716904	-0.406108355037455	-0.412109665952365	0.617691286418007	-0.400695705362432	-0.215020949495714	2.97991020372136	0.216422180862324	1
Merged-chr12-52501134-3	chr12	52501036	52501236	+	837.861084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14941.0	NM_009706	11855.0	Mm.35059	NM_009706	ENSMUSG00000035133	Arhgap5	p190-B|p190B	Rho GTPase activating protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-5222416-2	chr12	5222316	5222516	+	691.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164493, intron 2 of 13)	intron (NM_001164493, intron 2 of 13)	153266.0	NM_001164493	208439.0	Mm.388281	NM_001164493	ENSMUSG00000020627	Klhl29	A230106N14Rik|Gm68|Kbtbd9|mKIAA1921	kelch-like 29	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90074337-2	chr2	90074237	90074437	+	875.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22015.0	NM_020515	57272.0	Mm.330390	NM_020515	ENSMUSG00000075068	Olfr140	A16|MOR235-1|Ora16	olfactory receptor 140	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119945281-2	chr11	119945181	119945381	+	794.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037754, intron 1 of 13)	intron (NM_001037754, intron 1 of 13)	2189.0	NM_130862	108100.0	Mm.197534	NM_130862	ENSMUSG00000025372	Baiap2	IRSp53|R75030	brain-specific angiogenesis inhibitor 1-associated protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-34350390-4	chr6	34350278	34350478	+	856.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3768.0	NM_008012	14187.0	Mm.5378	NM_008012	ENSMUSG00000029762	Akr1b8	FR-1|Fgfrp|Fgrp	aldo-keto reductase family 1, member B8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-42608486-1	chr16	42608386	42608586	+	704.0	f0_balb.idr	Intergenic	Intergenic	267101.0	NR_040521	75722.0	Mm.243747	NR_040521	ENSMUSG00000075070	4932412D23Rik	Gm10809	RIKEN cDNA 4932412D23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-155070031-3	chr1	155069927	155070127	+	652.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151545, intron 3 of 6)	intron (NR_151545, intron 3 of 6)	13237.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150567177-1	chr4	150567077	150567277	+	570.5	f1_balb.idr	intron (NM_001085492, intron 11 of 22)	intron (NM_001085492, intron 11 of 22)	84997.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	-0.36660901368241	-0.709186507887793	-0.712065056118845	-0.314079710060155	-0.717380139855903	-0.708535378847997	-0.711431585645816	-0.557679752339148	-2.10533016975845	0.446067509942782	1
Merged-chr10-62349498-2	chr10	62349398	62349598	+	683.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_038038, exon 2 of 2)	non-coding (NR_038038, exon 2 of 2)	8891.0	NR_038038	70162.0	Mm.441212	NR_038038		Hk1os	2210417K05Rik	hexokinase 1, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-9005706-4	chr3	9005598	9005798	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001025263)	promoter-TSS (NM_001025263)	-975.0	NM_001357075	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	7.04665147521616	7.70310772918928	6.95454486769837	7.39109904633863	7.17134232298709	7.44210553917283	6.5940626826793	7.57141722450088	-0.0634225212208316	0.768191510437333	0.998431161219273
Merged-chr14-103013330-4	chr14	103013232	103013432	+	825.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045657, intron 2 of 2)	intron (NR_045657, intron 2 of 2)	20471.0	NR_045657	71264.0	Mm.399572	NR_045657	ENSMUSG00000114980	4933432I03Rik	-	RIKEN cDNA 4933432I03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-73480028-2	chr2	73479928	73480128	+	739.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153138, intron 1 of 7)	B4|SINE|B4	5725.0	NM_001289723	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99607802-1	chr7	99607702	99607902	+	544.0	f0_balb.idr	Intergenic	Intergenic	19301.0	NM_001195529	100503386.0	Mm.180719	NM_001195529	ENSMUSG00000096606	Tpbgl	EG245190|Gm4980	trophoblast glycoprotein-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-83955515-4	chr8	83955409	83955609	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024184)	promoter-TSS (NM_024184)	-185.0	NM_024184	66929.0	Mm.29680	NM_024184	ENSMUSG00000005470	Asf1b	1700003K02Rik|AA409591	anti-silencing function 1B histone chaperone	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-61965728-4	chr9	61965653	61965853	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028748, intron 5 of 7)	intron (NM_028748, intron 5 of 7)	-18954.0	NM_024245	71819.0	Mm.259374	NM_024245	ENSMUSG00000032254	Kif23	3110001D19Rik|C87313|CHO1|Knsl5|MKLP-1|MKLP1	kinesin family member 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-51750494-2	chr16	51750394	51750594	+	604.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	236793.0	NR_153657	629091.0	Mm.364775	NR_153657		Gm29686	-	predicted gene, 29686	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-94564688-2	chr16	94564588	94564788	+	682.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-5518.0	NM_007890	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-77854108-4	chr14	77854020	77854220	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025384, intron 2 of 5)	intron (NM_025384, intron 2 of 5)	20797.0	NM_025384	66148.0	Mm.248046	NM_025384	ENSMUSG00000022013	Dnajc15	1110003P16Rik|Dnajd1	DnaJ heat shock protein family (Hsp40) member C15	protein-coding	3.90320471906931	4.01691001332624	3.61762005756094	4.93475908681254	4.3420218751216	4.5176153201859	5.05761932371807	4.70998628701895	0.585044922714144	0.17592779256079	0.645775639984829
Merged-chr9-13442477-3	chr9	13442386	13442586	+	814.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11125.0	NR_028271	18689.0	Mm.41972	NM_008835	ENSMUSG00000031802	Phxr4	Sp5	per-hexamer repeat gene 4	ncRNA	-0.977029735097286	-1.09249049490067	-1.10309312253481	-1.11026971712438	-0.74754032159777	-1.09019286126243	-1.10069292004142	-0.95057215640521	1.53980432442083	0.613299430755953	1
Merged-chr3-40949694-4	chr3	40949579	40949779	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001040399)	promoter-TSS (NM_001040399)	-952.0	NM_001040399	214048.0	Mm.46782	NM_027663	ENSMUSG00000025762	Larp1b	1700108L22Rik|4933421B21Rik|AA690246|Larp2	La ribonucleoprotein domain family, member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-66346140-4	chr8	66346039	66346239	+	983.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175188, intron 4 of 7)	Lx5|LINE|L1	-40162.0	NM_001166375	72925.0	Mm.380457	NM_175188	ENSMUSG00000036469	March1	2900024D24Rik|BB085186	membrane-associated ring finger (C3HC4) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-103056500-2	chr11	103056400	103056600	+	772.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_008707, intron 6 of 11)	intron (NM_008707, intron 6 of 11)	24448.0	NM_001361706	72469.0	Mm.264743	NM_152813	ENSMUSG00000020937	Plcd3	2610205J15Rik|mKIAA1964	phospholipase C, delta 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-97312575-2	chr10	97312475	97312675	+	850.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-110903.0	NR_039547	100628616.0		NR_039547	ENSMUSG00000105557	Mir3966	mmu-mir-3966|mu-mir-3966	microRNA 3966	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-25754399-2	chr14	25754299	25754499	+	579.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001101433, intron 2 of 3)	intron (NM_001101433, intron 2 of 3)	14457.0	NM_001101433	71918.0	Mm.41904	NM_001101433	ENSMUSG00000055538	Zcchc24	2310047A01Rik	zinc finger, CCHC domain containing 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5667846-2	chr17	5667746	5667946	+	543.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 2 of 8)	intron (NM_146073, intron 2 of 8)	-130811.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-68475846-4	chr11	68475748	68475948	+	985.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177320, intron 3 of 18)	intron (NM_177320, intron 3 of 18)	-27171.0	NM_001004435	104709.0	Mm.234573	NM_001004435	ENSMUSG00000046207	Pik3r6	BB220380|p84|p84 PIKAP|p87(PIKAP)|p87PIKAP	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-55475620-2	chr12	55475520	55475720	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	17027.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-106883733-7	chr1	106883607	106883807	+	834.904785	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001360853)	TTS (NM_001360853)	22532.0	NM_009257	20724.0	Mm.268618	NM_009257	ENSMUSG00000067006	Serpinb5	1110036M19Rik|AI462524|AI646751|Maspin|PI-5|Spi7|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-39772303-2	chr15	39772203	39772403	+	665.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_022722, intron 9 of 9)	RMER13B|LTR|ERVK	-24742.0	NR_045788	100503072.0	Mm.446661	NR_045788	ENSMUSG00000087695	Gm16291	-	predicted gene 16291	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-69542179-1	chr13	69542079	69542279	+	694.0	f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-8315.0	NM_001169131	210106.0	Mm.315959	NM_198600	ENSMUSG00000034575	Papd7	LAK-1|POLK|Pols|TRF4|TRF4-1	PAP associated domain containing 7	protein-coding	-0.906278453279413	-0.407431447964563	-1.048208294768	-1.05352992943534	-1.05671119907732	-1.03350740516421	-1.04547307017549	-1.05313686373073	-2.88793990269837	0.350705703949045	1
Merged-chr1-131613536-4	chr1	131613456	131613656	+	693.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14442.0	NM_011924	26361.0	Mm.89986	NM_011924	ENSMUSG00000026432	Avpr1b	AVPR3|V3/V1b|VIBR|VPR3	arginine vasopressin receptor 1B	protein-coding	2.4698115712835	3.95818973758442	3.88861044589225	2.10454919244047	3.1142127677877	2.82074179653148	3.46038800843414	3.43030357616771	-0.191196687122685	0.781079535641362	0.998431161219273
Merged-chr13-49180329-2	chr13	49180229	49180429	+	794.875	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-7218.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-73185372-4	chr15	73185233	73185433	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153178)	promoter-TSS (NM_153178)	-386.0	NM_153178	239528.0	Mm.23095	NM_153178	ENSMUSG00000036698	Ago2	1110029L17Rik|2310051F07Rik|AI225898|AL022874|AW546247|Eif2c2|Gerp95|Gm10365|mKIAA4215	argonaute RISC catalytic subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-29717034-4	chr17	29716935	29717135	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163741)	promoter-TSS (NM_001163741)	-18.0	NM_001163741	68597.0	Mm.390979	NM_026782	ENSMUSG00000024018	Ccdc167	1110021J02Rik	coiled-coil domain containing 167	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25251660-6	chr7	25251605	25251805	+	838.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010155)	promoter-TSS (NM_010155)	-947.0	NM_010155	13875.0	Mm.8068	NM_010155	ENSMUSG00000040857	Erf	-	Ets2 repressor factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-120873867-1	chr10	120873767	120873967	+	1000.0	f1_balb.idr	intron (NM_177092, intron 1 of 6)	intron (NM_177092, intron 1 of 6)	16238.0	NR_038023	100504616.0	Mm.451174	NR_038023	ENSMUSG00000087480	Gm15910	-	predicted gene 15910	ncRNA	0.0962844437188629	0.627294151826863	0.109671280778216	0.422318062128771	0.0975323548374904	0.323011581755242	0.912309716854404	0.105530689663536	0.508816293111072	0.801783531487936	1
Merged-chr16-24492523-2	chr16	24492423	24492623	+	747.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 3 of 12)	intron (NM_178665, intron 3 of 12)	-36791.0	NR_038091	624582.0	Mm.439775	NR_038091		Morf4l1-ps1	A730098P11Rik	mortality factor 4 like 1, pseudogene 1	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123117416-2	chr5	123117316	123117516	+	611.25	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001039723)	TTS (NM_001039723)	15213.0	NM_175092	23912.0	Mm.253876	NM_175092	ENSMUSG00000029449	Rhof	AI845056|AV026554|Arhf|Ifld1|Rif	ras homolog family member F (in filopodia)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-67398202-4	chr1	67398111	67398311	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MamGypLTR1a|LTR|Gypsy	275184.0	NM_001080809	227231.0	Mm.343942	NM_001080809	ENSMUSG00000025991	Cps1	4732433M03Rik|CPS|D1Ucla3	carbamoyl-phosphate synthetase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129632496-2	chr2	129632417	129632617	+	922.75	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001291021)	TTS (NM_001291021)	37055.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	1.21966862304826	0.802217733158216	0.787244016388084	1.88455747693794	0.942608605839265	1.04236459105595	1.47948741282776	1.73347197683873	0.247765342494524	0.857203183605537	0.998431161219273
Merged-chr7-133124298-4	chr7	133124212	133124412	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009980)	promoter-TSS (NM_009980)	-829.0	NM_009980	13017.0	Mm.246240	NM_009980	ENSMUSG00000030970	Ctbp2	AA407280|D7Ertd45e|Gtrgeo6|Ribeye	C-terminal binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-54956082-4	chr11	54955976	54956176	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001199275, exon 2 of 19)	5' UTR (NM_001199275, exon 2 of 19)	6864.0	NM_021327	57783.0	Mm.259671	NM_021327	ENSMUSG00000020400	Tnip1	ABIN|ABIN-1|ABIN1|AU018810|Naf1|Nef|VAN	TNFAIP3 interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-117104850-2	chr4	117104753	117104953	+	706.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_008958, exon 3 of 22)	exon (NM_008958, exon 3 of 22)	8797.0	NM_008958	19207.0	Mm.287037	NM_008958	ENSMUSG00000028681	Ptch2	ptc2	patched 2	protein-coding	0.113740764993026	0.136424001789306	0.129056129707023	0.704725213986529	0.115174161171877	0.138076783443383	1.05638835607876	0.595564759879205	1.44823417350491	0.491632440242131	1
Merged-chr10-25151379-3	chr10	25151273	25151473	+	773.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48797.0	NM_001347460	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-114920781-3	chr6	114920683	114920883	+	824.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356371, intron 2 of 5)	intron (NM_001356371, intron 2 of 5)	1038.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-40855403-2	chr4	40855303	40855503	+	573.833374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022305)	promoter-TSS (NM_022305)	-866.0	NM_022305	14595.0	Mm.15622	NM_022305	ENSMUSG00000028413	B4galt1	B-1,4-GalT|B-1,4-GalT1|GalT|Ggtb|Ggtb2|b4Gal-T1|beta-1,4-GalT|beta-1,4-GalT1|beta4Gal-T1	UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117149195-2	chr10	117149095	117149295	+	667.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177798)	promoter-TSS (NM_177798)	-721.0	NM_177798	327826.0	Mm.135965	NM_177798	ENSMUSG00000020170	Frs2	4732458E18|C330018A15Rik|Frs2alpha|SNT1	fibroblast growth factor receptor substrate 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56350872-4	chr17	56350778	56350978	+	888.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172132, intron 1 of 22)	intron (NM_172132, intron 1 of 22)	24828.0	NM_001357909	193796.0	Mm.45047	NM_172132	ENSMUSG00000024201	Kdm4b	4732474L06Rik|Jmjd2b	lysine (K)-specific demethylase 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-86582366-4	chr11	86582274	86582474	+	959.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	1784.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-37608016-2	chr13	37607916	37608116	+	754.799988	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-218022.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-118465117-4	chr5	118465026	118465226	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-95593.0	NM_001347445	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-57722571-4	chr10	57722478	57722678	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008863, intron 4 of 5)	intron (NM_008863, intron 4 of 5)	-62345.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-52586799-4	chr6	52586693	52586893	+	829.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145567, intron 4 of 7)	B1F|SINE|Alu	53507.0	NM_145567	58875.0	Mm.286458	NM_145567	ENSMUSG00000029776	Hibadh	6430402H10Rik|AI265272	3-hydroxyisobutyrate dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117830617-4	chr11	117830526	117830726	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027827, intron 2 of 10)	intron (NM_027827, intron 2 of 10)	-4612.0	NM_009387	21877.0	Mm.2661	NM_009387	ENSMUSG00000025574	Tk1	D530002A18Rik|Tk-1|Tk1a|Tk1b	thymidine kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91437692-2	chr16	91437592	91437792	+	699.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-27412.0	NR_077219	100503120.0	Mm.387130	NR_077219	ENSMUSG00000084866	A930006K02Rik	-	RIKEN cDNA A930006K02 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-95875312-1	chr13	95875212	95875412	+	596.0	f1_balb.idr	intron (NM_027711, intron 1 of 35)	L1MB3|LINE|L1	16610.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	0.528169392131423	0.151190822961508	0.144351348146028	0.139050070508839	0.131520128709671	1.02018384427475	0.337269130016016	0.594529490020191	2.14272465802948	0.286394744610123	1
Merged-chr13-56634525-4	chr13	56634437	56634637	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155548, intron 12 of 16)	intron (NR_155548, intron 12 of 16)	24951.0	NR_155548	21810.0	Mm.14455	NM_009369	ENSMUSG00000035493	Tgfbi	68kDa|AI181842|AI747162|Beta-ig|big-h3	transforming growth factor, beta induced	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153081347-4	chr2	153081235	153081435	+	849.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_145536, exon 9 of 9)	3' UTR (NM_145536, exon 9 of 9)	15380.0	NM_145536	228788.0	Mm.299979	NM_145536	ENSMUSG00000027474	Ccm2l	-	cerebral cavernous malformation 2-like	protein-coding	-0.424952958746004	-0.414488507243594	-0.41793733622026	0.0765232928957928	-0.289383547036298	-0.230055940790619	-0.417178382267592	-0.134067373817489	0.0557631682654696	0.981629981156264	1
Merged-chr13-103974180-3	chr13	103974085	103974285	+	679.638916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53599.0	NM_001005868	59079.0	Mm.277354	NM_021563	ENSMUSG00000021709	Erbin	1700028E05Rik|Erbb2ip|mKIAA1225	Erbb2 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19933693-4	chr7	19933574	19933774	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12531.0	NM_027514	52118.0	Mm.227506	NM_027514	ENSMUSG00000040511	Pvr	3830421F03Rik|CD155|D7Ertd458e|HVED|PVS|Taa1|Tage4|mE4|necl-5	poliovirus receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-122923154-4	chr9	122923050	122923250	+	961.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009544)	promoter-TSS (NM_009544)	72.0	NM_009544	22646.0	Mm.290595	NM_009544	ENSMUSG00000057895	Zfp105	AW557864	zinc finger protein 105	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-149355979-2	chr6	149355879	149356079	+	579.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR1F_Mm|LTR|ERVK	46565.0	NM_001289662	67246.0	Mm.333515	NM_026054	ENSMUSG00000032712	2810474O19Rik	6720435I21Rik|AA536804|AU020969|GET|Kiaa1551	RIKEN cDNA 2810474O19 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-51501497-4	chr1	51501394	51501594	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23095.0	NM_001310549	109019.0	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-85082286-4	chr8	85082178	85082378	+	935.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010764)	promoter-TSS (NM_010764)	-991.0	NM_010764	17159.0	Mm.4219	NM_010764	ENSMUSG00000005142	Man2b1	AW107687|LAMAN	mannosidase 2, alpha B1	protein-coding	2.36009242408737	3.00310014716303	2.41912856938597	3.00123330108149	2.60381637212278	2.35408016673735	3.02137912826103	3.48505669555099	0.406295934521286	0.570659471144377	0.962718661854691
Merged-chr10-82008174-2	chr10	82008074	82008274	+	703.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E-int|LTR|ERVL-MaLR	-39949.0	NM_001319203	408062.0	Mm.391409	NM_001024626	ENSMUSG00000061371	Zfp873	-	zinc finger protein 873	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-8797910-2	chr19	8797810	8798010	+	759.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_026329, intron 2 of 7)	B1_Mus1|SINE|Alu	647.0	NM_026329	67710.0	Mm.22117	NM_026329	ENSMUSG00000071662	Polr2g	2410046K11Rik|A230108L04Rik|C76415|RBP7|Rpo2-7l	polymerase (RNA) II (DNA directed) polypeptide G	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-51903090-3	chr14	51903150	51903350	+	863.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8739.0	NM_001360269	29811.0	Mm.26722	NM_013864	ENSMUSG00000004558	Ndrg2	AI182517|AU040374|Ndr2|SYLD	N-myc downstream regulated gene 2	protein-coding	1.66379850811248	1.84172363309014	1.78597869513447	2.16550590012125	2.51895854935657	2.44063532178428	2.64697664235292	2.17642417074068	1.47771167946197	0.0913975861309761	0.467487992467825
Merged-chr2-155275622-2	chr2	155275527	155275727	+	896.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025735)	promoter-TSS (NM_025735)	-737.0	NM_025735	66734.0	Mm.196239	NM_025735	ENSMUSG00000027602	Map1lc3a	1010001H21Rik|4922501H04Rik|LC3|LC3a	microtubule-associated protein 1 light chain 3 alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-26473351-2	chr2	26473251	26473451	+	950.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008714, intron 17 of 33)	intron (NM_008714, intron 17 of 33)	-3232.0	NR_105962	102465602.0		NR_105962	ENSMUSG00000098548	Mir6996	Gm27531|mmu-mir-6996	microRNA 6996	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-85620603-1	chr1	85620503	85620703	+	552.0	f1_balb.idr	intron (NM_001013817, intron 6 of 16)	L1_Mur2|LINE|L1	-16712.0	NM_175397	109032.0	Mm.335802	NM_030194	ENSMUSG00000070034	Sp110	5031415C07Rik|52kDa|5830484A20Rik|Ifi75|Ipr1	Sp110 nuclear body protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-152847924-4	chr2	152847818	152848018	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001141976)	promoter-TSS (NM_001141976)	-46.0	NM_001141975	72119.0	Mm.407737	NM_028109	ENSMUSG00000027469	Tpx2	2610005B21Rik|DIL2|REPP86|p100	TPX2, microtubule-associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-17739279-4	chr17	17739193	17739393	+	875.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR9E|LTR|ERVK	35352.0	NM_001104539	626942.0	Mm.404019	NM_001104539	ENSMUSG00000092120	Vmn2r90	EG626942	vomeronasal 2, receptor 90	protein-coding	2.44200514021853	3.05454868909763	1.18739053774131	2.49893829778942	1.9867853095691	2.10336317631252	1.19493608796483	1.63145460145146	-1.59750115007613	0.123408127781477	0.550700737833682
Merged-chr17-63501337-3	chr17	63501238	63501438	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015794)	promoter-TSS (NM_015794)	-758.0	NM_015794	50758.0	Mm.136366	NM_015794	ENSMUSG00000023965	Fbxl17	6330576B01Rik|AI452053|BB073797|C130023C01Rik|Fbx13|Fbxo13	F-box and leucine-rich repeat protein 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-84885173-3	chr3	84885078	84885278	+	846.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177773, intron 3 of 13)	intron (NM_001177773, intron 3 of 13)	21033.0	NM_001177774	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-30187089-2	chr16	30186989	30187189	+	628.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	80443.0	NM_027904	71756.0	Mm.290614	NM_027904	ENSMUSG00000023176	Cpn2	1300018K11Rik	carboxypeptidase N, polypeptide 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64882802-2	chr5	64882702	64882902	+	962.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	49897.0	NM_030682	21897.0	Mm.273024	NM_030682	ENSMUSG00000044827	Tlr1	-	toll-like receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35992210-2	chr17	35992110	35992310	+	895.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2294.0	NR_015618	77810.0	Mm.483143	NR_015618		A930015D03Rik	-	RIKEN cDNA A930015D03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-83729463-5	chr8	83729322	83729522	+	686.033325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001163031, exon 5 of 18)	exon (NM_001163031, exon 5 of 18)	-5438.0	NR_106188	102465897.0		NR_106188	ENSMUSG00000098465	Mir1668	Gm27590|mmu-mir-1668	microRNA 1668	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128388987-2	chr10	128388887	128389087	+	706.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_105880)	TTS (NR_105880)	155.0	NR_105880	102465979.0		NR_105880	ENSMUSG00000106600	Mir6915	mmu-mir-6915	microRNA 6915	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133888943-2	chr4	133888804	133889004	+	560.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-1107.0	NM_009097	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	-1.23826193677681	-1.21241040182355	-1.22270105026776	-0.934241458926562	-1.23783648736863	-1.21018037537722	-1.22037147302458	-0.929982742503718	0.0323590357436516	0.9924297640193	1
Merged-chr7-51173502-2	chr7	51173402	51173602	+	631.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur1|LINE|L1	-337527.0	NR_073508	233246.0	Mm.254431	NM_177694	ENSMUSG00000055489	Ano5	9330162L24|Gdd1|Tmem16e	anoctamin 5	protein-coding	-1.05433787351555	-1.03521066959286	-1.04642845936568	-0.7533208799879	-1.05386630084284	-1.03277972775296	-1.04388899764806	-0.628846266594589	0.543540423446939	0.86770660567911	1
Merged-chr11-59191103-4	chr11	59191007	59191207	+	936.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008193, intron 1 of 7)	intron (NM_008193, intron 1 of 7)	845.0	NM_008193	14923.0	Mm.3624	NM_008193	ENSMUSG00000020444	Guk1	AA409738|AL033299|AL033300|AV026611|Gmk|Guk-1	guanylate kinase 1	protein-coding	3.24430771608251	2.88369067903399	3.50844794674843	2.70363111703329	3.55687528269661	2.76925843536077	1.93270971203168	3.4955102027373	-0.0357427917638764	0.959062135518912	0.998431161219273
Merged-chr11-61929494-4	chr11	61929402	61929602	+	936.69165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019921, intron 1 of 14)	intron (NM_019921, intron 1 of 14)	755.0	NM_019921	56697.0	Mm.274404	NM_019921	ENSMUSG00000047804	Akap10	1500031L16Rik|B130049N18Rik|D-AKAP-2|D-AKAP2|PRKA10	A kinase (PRKA) anchor protein 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-29543750-2	chr6	29543650	29543850	+	665.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177296, intron 21 of 22)	intron (NM_177296, intron 21 of 22)	14468.0	NM_001252382	27056.0	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-105924510-2	chr1	105924410	105924610	+	696.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR16|LTR|ERVK	65772.0	NR_151625	635504.0	Mm.359717	NR_151625		Gm7160	EG635504	predicted gene 7160	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129491504-2	chr4	129491404	129491604	+	777.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080442)	promoter-TSS (NM_080442)	314.0	NM_001085491	68233.0	Mm.424983	NM_001085491	ENSMUSG00000078554	Fam229a	1700125D06Rik	family with sequence similarity 229, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-92055513-4	chr2	92055400	92055600	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-31330.0	NM_011957	26427.0	Mm.10353	NM_011957	ENSMUSG00000027230	Creb3l1	Oasis	cAMP responsive element binding protein 3-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-112275442-2	chr5	112275342	112275542	+	978.357178	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1249.0	NM_001326590	22022.0	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-59012059-4	chr12	59011931	59012131	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009147)	promoter-TSS (NM_009147)	-14.0	NM_001361956	20334.0	Mm.491137	NM_009147	ENSMUSG00000020986	Sec23a	Msec23|Sec23r	SEC23 homolog A, COPII coat complex component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-9347072-3	chr3	9346983	9347183	+	844.099976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55995.0	NR_015499	320088.0	Mm.212908	NR_015499	ENSMUSG00000097365	C030034L19Rik	A130044O20Rik	RIKEN cDNA C030034L19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128780375-4	chr10	128780281	128780481	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10529.0	NM_001164197	58223.0	Mm.131266	NM_021412	ENSMUSG00000025355	Mmp19	-	matrix metallopeptidase 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-62488811-1	chr9	62488711	62488911	+	553.0	f0_balb.idr	intron (NM_175484, intron 2 of 11)	intron (NM_175484, intron 2 of 11)	48233.0	NM_175484	235431.0	Mm.335229	NM_175484	ENSMUSG00000041729	Coro2b	CLIPINC|E130012P22Rik	coronin, actin binding protein, 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-72429399-4	chr1	72429300	72429500	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045533, intron 3 of 3)	intron (NM_001045533, intron 3 of 3)	107164.0	NM_001045533	381270.0	Mm.337023	NM_001045533	ENSMUSG00000039372	March4	BC056494|mKIAA1399	membrane-associated ring finger (C3HC4) 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-99214667-4	chr5	99214570	99214770	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38257.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-28634057-2	chr2	28633957	28634157	+	736.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur2|SINE|Alu	-7176.0	NM_001289575	64930.0	Mm.224354	NM_022887	ENSMUSG00000026812	Tsc1	-	tuberous sclerosis 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111946881-4	chr12	111946755	111946955	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2373.0	NR_029464	77675.0	Mm.98331	NR_029464	ENSMUSG00000113769	5033406O09Rik	9130204G15Rik	RIKEN cDNA 5033406O09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-48598215-1	chr1	48598115	48598315	+	576.0	f0_balb.idr	Intergenic	Intergenic	-646401.0	NR_151585	442837.0	Mm.337149	NM_001002792	ENSMUSG00000051616	C230029F24Rik	-	RIKEN cDNA C230029F24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105358564-2	chr8	105358464	105358664	+	667.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081332, intron 10 of 15)	intron (NM_001081332, intron 10 of 15)	10306.0	NM_001081332	277973.0	Mm.334766	NM_001081332	ENSMUSG00000014786	Slc9a5	Gm696	solute carrier family 9 (sodium/hydrogen exchanger), member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-104822610-4	chr3	104822495	104822695	+	859.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001355044)	TTS (NM_001355044)	-4032.0	NM_001163440	17454.0	Mm.1597	NM_008619	ENSMUSG00000002227	Mov10	C77703|Mov-10	Moloney leukemia virus 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166718884-2	chr2	166718784	166718984	+	631.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-5052.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36071782-2	chr1	36071682	36071882	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_015818, intron 1 of 1)	intron (NM_015818, intron 1 of 1)	3382.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-103102193-2	chr15	103102093	103102293	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	44635.0	NR_045743	432989.0	Mm.383979	NR_045743	ENSMUSG00000097003	D930007P13Rik	-	Riken cDNA D930007P13 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126375835-2	chr7	126375735	126375935	+	630.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_045537, intron 2 of 12)	intron (NR_045537, intron 2 of 12)	2099.0	NM_023712	73658.0	Mm.11112	NM_023712	ENSMUSG00000030741	Spns1	2210013K02Rik|Spin1|Spinl	spinster homolog 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-72773584-2	chr11	72773483	72773683	+	672.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3_Mus|LINE|L1	22256.0	NM_001024926	192986.0	Mm.194755	NM_001024926	ENSMUSG00000057778	Cyb5d2	9330151E16Rik|Gm2	cytochrome b5 domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-26449733-2	chr2	26449633	26449833	+	829.583374	f1_balb.idr|f1_c57bl6.idr	intron (NR_152209, intron 1 of 2)	intron (NR_152209, intron 1 of 2)	3809.0	NR_152207	100125929.0	Mm.392411	NR_152207		0610009E02Rik	-	RIKEN cDNA 0610009E02 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-124125204-2	chr9	124125104	124125304	+	823.166687	f1_balb.idr|f1_c57bl6.idr	exon (NM_009917, exon 2 of 2)	exon (NM_009917, exon 2 of 2)	3661.0	NM_009917	12774.0	Mm.14302	NM_009917	ENSMUSG00000079227	Ccr5	AM4-7|CD195|Cmkbr5	chemokine (C-C motif) receptor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-85697686-4	chr11	85697597	85697797	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138681, intron 24 of 25)	intron (NM_138681, intron 24 of 25)	22047.0	NR_045875	71489.0	Mm.442482	NR_045875	ENSMUSG00000086199	Bcas3os1	8430403D17Rik	breast carcinoma amplified sequence 3, opposite strand 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-62483263-4	chr1	62483160	62483360	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081050, intron 20 of 22)	intron (NM_001081050, intron 20 of 22)	-220057.0	NM_001077406	18187.0	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153198701-4	chr2	153198618	153198818	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133847, intron 13 of 17)	intron (NM_133847, intron 13 of 17)	26723.0	NM_198617	241732.0	Mm.277243	NM_198617	ENSMUSG00000074671	Tspyl3	AW212607|Gm36	TSPY-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-32400654-2	chr16	32400554	32400754	+	895.666626	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001160402, exon 1 of 5)	5' UTR (NM_001160402, exon 1 of 5)	148.0	NM_001160402	277203.0	Mm.484240	NM_001160402	ENSMUSG00000079625	Tm4sf19	EG277203	transmembrane 4 L six family member 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-43138543-4	chr17	43138429	43138629	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19762.0	NR_045155	545207.0	Mm.329050	NR_045153		E130008D07Rik	-	RIKEN cDNA E130008D07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-17660961-4	chr10	17660850	17661050	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62278.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-23433801-4	chr1	23433704	23433904	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3b|LINE|CR1	-50629.0	NM_001081079	70155.0	Mm.28013	NM_001081079	ENSMUSG00000026158	Ogfrl1	2210417C17Rik	opioid growth factor receptor-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-78352913-2	chr10	78352813	78353013	+	841.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1213.0	NM_053014	28169.0	Mm.141230	NM_053014	ENSMUSG00000001211	Agpat3	AW061257|AW493985|D10Jhu12e|lpaat3	1-acylglycerol-3-phosphate O-acyltransferase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-73708174-2	chr15	73708074	73708274	+	628.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173365)	promoter-TSS (NM_173365)	-669.0	NM_173365	239530.0	Mm.122997	NM_173365	ENSMUSG00000045281	Gpr20	A430106B11Rik	G protein-coupled receptor 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-34903377-2	chr2	34903277	34903477	+	633.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_028716, exon 8 of 15)	exon (NM_028716, exon 8 of 15)	10599.0	NM_028716	74016.0	Mm.65691	NM_028716	ENSMUSG00000026873	Phf19	3110009G19Rik|3321402G02Rik	PHD finger protein 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-19930401-3	chr11	19930321	19930521	+	776.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033523, intron 1 of 5)	B1_Mur3|SINE|Alu	5979.0	NM_033523	114716.0	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding	0.744030263721636	1.14245903695744	0.608100031942906	1.27439952116372	0.749224306137525	1.15294581856389	0.610292545673523	1.28284725047877	0.0340663922352454	0.982056727163023	0.998431161219273
Merged-chr19-42165549-2	chr19	42165449	42165649	+	562.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-5018.0	NM_177319	319740.0	Mm.287359	NM_177319	ENSMUSG00000018820	Zfyve27	2210011N02Rik|9530077C24Rik|AI426636|AI593546|AI835681	zinc finger, FYVE domain containing 27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-54058545-4	chr10	54058445	54058645	+	829.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008548, intron 2 of 12)	intron (NM_008548, intron 2 of 12)	17251.0	NM_008548	17155.0	Mm.117294	NM_008548	ENSMUSG00000003746	Man1a	Man1a1|PCR1	mannosidase 1, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-121346248-2	chr14	121346148	121346348	+	629.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145465, intron 1 of 10)	intron (NM_145465, intron 1 of 10)	32982.0	NM_145465	223255.0	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-49727397-4	chr2	49727299	49727499	+	729.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008449, intron 12 of 25)	intron (NM_008449, intron 12 of 25)	-60287.0	NM_027990	71897.0	Mm.41381	NM_027990	ENSMUSG00000026765	Lypd6b	2310010M24Rik|AW049525	LY6/PLAUR domain containing 6B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-73085926-4	chr9	73085789	73085989	+	907.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301230, intron 5 of 6)	intron (NM_001301230, intron 5 of 6)	-16509.0	NM_025890	66991.0	Mm.471745	NM_025890	ENSMUSG00000092622	Khdc3	2410004A20Rik|AI467128|FILIA|OEEP48	KH domain containing 3, subcortical maternal complex member	protein-coding	-1.3681463318974	-1.33624156493372	-1.34650167276047	-0.80669348975676	-1.36769697821496	-1.33401815676661	-1.34417900924365	-1.3534210303531	-2.3580830592467	0.49586638340111	1
Merged-chr2-72287584-2	chr2	72287484	72287684	+	555.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023057, intron 1 of 19)	intron (NM_023057, intron 1 of 19)	1883.0	NM_178084	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-38799450-4	chr19	38799377	38799577	+	822.008301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021315, intron 11 of 20)	RLTR17B_Mm|LTR|ERVK	19760.0	NM_021315	57753.0	Mm.86482	NM_021315	ENSMUSG00000024999	Noc3l	AF233884|Fad24	NOC3 like DNA replication regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-25705093-1	chr5	25704993	25705193	+	542.0	f1_balb.idr	intron (NM_020570, intron 1 of 2)	intron (NM_020570, intron 1 of 2)	704.0	NM_020570	57434.0	Mm.143767	NM_020570	ENSMUSG00000028933	Xrcc2	4921524O04Rik|8030409M04Rik|RAD51|RecA	X-ray repair complementing defective repair in Chinese hamster cells 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-31918590-4	chr16	31918481	31918681	+	808.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15270.0	NM_172822	239827.0	Mm.440388	NM_172822	ENSMUSG00000045625	Pigz	F630022B06Rik	phosphatidylinositol glycan anchor biosynthesis, class Z	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-21608639-4	chr10	21608534	21608734	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027968, intron 2 of 2)	intron (NR_027968, intron 2 of 2)	15489.0	NR_027968	67692.0	Mm.54306	NM_183266	ENSMUSG00000050844	1700020N01Rik	-	RIKEN cDNA 1700020N01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-18624040-4	chr3	18623942	18624142	+	997.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-143565.0	NR_040544	73959.0	Mm.60616	NR_040544	ENSMUSG00000102699	4930433B08Rik	-	RIKEN cDNA 4930433B08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-107982438-2	chr5	107982338	107982538	+	810.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026062, intron 1 of 4)	intron (NM_026062, intron 1 of 4)	4639.0	NM_026062	67266.0	Mm.277897	NM_026062	ENSMUSG00000029270	Fam69a	2900024C23Rik|AI315274	family with sequence similarity 69, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-78312917-4	chr3	78312817	78313017	+	951.783325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	831970.0	NM_001310536	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131015564-4	chr1	131015465	131015665	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4280.0	NM_010548	16153.0	Mm.874	NM_010548	ENSMUSG00000016529	Il10	CSIF|Il-10	interleukin 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-96684466-5	chr15	96684337	96684537	+	778.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15291.0	NM_001355633	67760.0	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122778368-2	chr5	122778268	122778468	+	678.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199676, intron 1 of 16)	intron (NM_001199676, intron 1 of 16)	1042.0	NM_001199676	207565.0	Mm.289237	NM_145358	ENSMUSG00000029471	Camkk2	6330570N16Rik|AW061083|mKIAA0787	calcium/calmodulin-dependent protein kinase kinase 2, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-109438983-3	chr7	109438961	109439161	+	632.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_054103)	promoter-TSS (NM_054103)	-8.0	NM_054103	117229.0	Mm.389950	NM_054103	ENSMUSG00000031027	Stk33	4921505G21Rik|AW061264	serine/threonine kinase 33	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126901292-4	chr8	126901187	126901387	+	958.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44634.0	NM_024214	67952.0	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118655101-4	chr9	118654990	118655190	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 5 of 27)	intron (NM_133721, intron 5 of 27)	48381.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-88136341-4	chr6	88136242	88136442	+	658.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32084.0	NR_105795	102465196.0		NR_105795	ENSMUSG00000099095	Mir6376	Gm27778|mmu-mir-6376	microRNA 6376	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-25088527-2	chr8	25088427	25088627	+	703.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_031257, intron 1 of 11)	intron (NM_031257, intron 1 of 11)	13284.0	NM_031257	83436.0	Mm.261122	NM_031257	ENSMUSG00000031557	Plekha2	6430512N22Rik|AI851530|AU041791|TAPP2|W91773	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-117025802-2	chr2	117025702	117025902	+	610.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-95269.0	NM_001277256	114715.0	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-95946048-2	chr16	95945948	95946148	+	584.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16971.0	NR_040484	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-119631353-2	chr4	119631253	119631453	+	551.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6379.0	NM_008190	14915.0	Mm.2614	NM_008190	ENSMUSG00000023247	Guca2a	Guca2	guanylate cyclase activator 2a (guanylin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135369962-4	chr5	135369859	135370059	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145414)	promoter-TSS (NM_145414)	6.0	NM_145414	100609.0	Mm.281189	NM_145414	ENSMUSG00000000916	Nsun5	9830109N13Rik|AI326939|Nol1r|Wbscr20|Wbscr20a	NOL1/NOP2/Sun domain family, member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-31452412-4	chr5	31452340	31452540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172993)	promoter-TSS (NM_172993)	4.0	NM_001360000	269639.0	Mm.259127	NM_172993	ENSMUSG00000062761	Zfp512	2500002M11Rik|AI450173|D230008H22|Znf512	zinc finger protein 512	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120576942-2	chr8	120576842	120577042	+	854.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145896, intron 14 of 15)	intron (NM_001145896, intron 14 of 15)	12133.0	NM_178856	272551.0	Mm.275910	NM_178856	ENSMUSG00000031821	Gins2	2210013I18Rik|4833427B12Rik|AI323585|Pfs2	GINS complex subunit 2 (Psf2 homolog)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-64220403-2	chr15	64220303	64220503	+	795.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 3 of 28)	intron (NM_001276461, intron 3 of 28)	92270.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72438077-7	chr6	72437999	72438199	+	872.6785890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_046011)	promoter-TSS (NR_046011)	-584.0	NR_046011	78108.0	Mm.440743	NR_046011	ENSMUSG00000108591	Particl	4930414L22Rik|AI449819	promoter of Mat2a antisense radiation induced circulating long non-coding RNA	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-56614473-3	chr8	56614365	56614565	+	940.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	63331.0	NM_015791	50753.0	Mm.251174	NM_015791	ENSMUSG00000038206	Fbxo8	Fbx8	F-box protein 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45908589-2	chr7	45908489	45908689	+	612.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144801, intron 5 of 7)	intron (NM_144801, intron 5 of 7)	11520.0	NM_144801	70209.0	Mm.163766	NM_144801	ENSMUSG00000002781	Tmem143	2310076O21Rik|AI481604	transmembrane protein 143	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-92504822-1	chr5	92504722	92504922	+	1000.0	f0_c57.idr	intron (NM_007644, intron 1 of 11)	intron (NM_007644, intron 1 of 11)	835.0	NM_007644	12492.0	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-114925481-2	chr6	114925381	114925581	+	605.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356371, intron 2 of 5)	intron (NM_001356371, intron 2 of 5)	-3660.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-54770588-4	chr14	54770463	54770663	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016972, intron 1 of 10)	intron (NM_016972, intron 1 of 10)	11323.0	NM_016972	50934.0	Mm.276831	NM_016972	ENSMUSG00000022180	Slc7a8	AA408822|LAT2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	protein-coding	6.02663470768256	6.25678937378086	5.56552206223088	6.24370282824052	5.38234072169512	5.79254037932096	5.5163799168261	5.90130650605135	-0.432446419137621	0.0940620567621788	0.475248409755455
Merged-chr15-44340982-2	chr15	44340882	44341082	+	647.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-87129.0	NM_175009	223527.0	Mm.291828	NM_175009	ENSMUSG00000022338	Eny2	1810057B09Rik|6720481I12|DC6|Ey2	ENY2 transcription and export complex 2 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-59895592-4	chr1	59895488	59895688	+	911.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17418.0	NM_001037725	72750.0	Mm.258250	NM_001037725	ENSMUSG00000041040	Fam117b	2810425F24Rik|6330416D14Rik|Als2cr13	family with sequence similarity 117, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28759414-2	chr7	28759314	28759514	+	893.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001195091)	TTS (NM_001195091)	3240.0	NM_001195091	100504112.0	Mm.379654	NM_001195091	ENSMUSG00000096257	Ccer2	EG624918|Gm6537	coiled-coil glutamate-rich protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-16102219-4	chr4	16102131	16102331	+	997.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61412.0	NM_138952	192656.0	Mm.112765	NM_138952	ENSMUSG00000041135	Ripk2	2210420D18Rik|CARD3|CARDIAK|CCK|D4Bwg0615e|RICK|RIP2	receptor (TNFRSF)-interacting serine-threonine kinase 2	protein-coding	2.97540610273849	2.49095944488566	3.05995993240371	2.34370882682769	3.12800789904727	2.65232188952771	2.80166262237158	2.48942412031956	0.071170819146291	0.919882141233055	0.998431161219273
Merged-chr13-44819555-3	chr13	44819427	44819627	+	857.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205043, intron 1 of 17)	intron (NM_001205043, intron 1 of 17)	88256.0	NM_001205043	16468.0	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-63014850-4	chr11	63014752	63014952	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	-10718.0	NR_126547	74884.0	Mm.363520	NR_126547	ENSMUSG00000087604	Cdrt4os1	4930452L02Rik	CMT1A duplicated region transcript 4, opposite strand 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-4638312-1	chr11	4638212	4638412	+	610.0	f1_c57bl6.idr	intron (NM_029291, intron 1 of 19)	intron (NM_029291, intron 1 of 19)	519.0	NM_029291	75452.0	Mm.439906	NM_029291	ENSMUSG00000020412	Ascc2	1700011I11Rik|2610034L15Rik|AI482016|ASC1p100|AW046480	activating signal cointegrator 1 complex subunit 2	protein-coding	1.23233868011902	1.12667534100494	0.714026865482042	1.60178967805518	0.690615878001481	0.729071720119614	1.2411634515552	1.52351515008275	-0.434052369108482	0.771951789887986	0.998431161219273
Merged-chr11-115167792-1	chr11	115167692	115167892	+	585.0	f1_c57bl6.idr	intron (NM_012030, intron 1 of 5)	MIRb|SINE|MIR	4451.0	NM_012030	26941.0	Mm.27842	NM_012030	ENSMUSG00000020733	Slc9a3r1	EBP-50|NHE-RF|NHERF-1|NHERF1	solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129832490-2	chr4	129832329	129832529	+	688.25	f0_balb.idr|f1_balb.idr	intron (NM_001164745, intron 1 of 5)	intron (NM_001164745, intron 1 of 5)	11721.0	NM_001164745	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	0.517700025814173	0.214373098616898	1.29567830692295	0.196346617674963	0.184943379034209	1.19738121735737	0.206514805508006	0.197739378811128	-0.479335643284295	0.808795846317458	1
Merged-chr12-32633380-2	chr12	32633280	32633480	+	624.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-186955.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-124607948-3	chr2	124607902	124608102	+	680.916687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290997, intron 5 of 20)	intron (NM_001290997, intron 5 of 20)	-2294.0	NM_199238	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-125543341-3	chr8	125543202	125543402	+	993.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357372, intron 1 of 21)	intron (NM_001357372, intron 1 of 21)	26561.0	NM_001357372	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	1.80440710461514	2.72398633846363	1.45294112609479	2.27131018818043	2.98356134151825	2.98203379827233	3.73503219554201	3.34539596240279	2.1986248001386	0.00422547858190186	0.0587314409424015
Merged-chr15-76456777-2	chr15	76456677	76456877	+	689.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198885)	promoter-TSS (NM_198885)	-661.0	NM_198885	20289.0	Mm.322821	NM_198885	ENSMUSG00000034161	Scx	BB114693|Bhlha41|Scl	scleraxis	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-35709164-2	chr8	35709016	35709216	+	612.25	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	117443.0	NM_027998	71908.0	Mm.37817	NM_027998	ENSMUSG00000055976	Cldn23	2310014B08Rik	claudin 23	protein-coding	0.721156628832927	0.70995009682358	0.0740436602288007	0.0692710808390013	0.062505948100261	0.0816006023050449	0.552402602868866	0.0701056943092321	-1.5709494193009	0.474083948997321	1
Merged-chr18-10531790-4	chr18	10531690	10531890	+	995.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083628, intron 18 of 32)	intron (NM_001083628, intron 18 of 32)	78562.0	NM_001081222	77805.0	Mm.210996	NM_144542	ENSMUSG00000024293	Esco1	A930014I12Rik	establishment of sister chromatid cohesion N-acetyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6127047-4	chr19	6127062	6127262	+	930.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026912, intron 1 of 7)	intron (NM_026912, intron 1 of 7)	1053.0	NM_026912	69024.0	Mm.329629	NM_026912	ENSMUSG00000024787	Snx15	1500032B08Rik|E130013C21Rik	sorting nexin 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-170863243-3	chr1	170863157	170863357	+	845.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081304, intron 1 of 15)	L2|LINE|L2	4514.0	NM_001081304	226641.0	Mm.377046	NM_001081304	ENSMUSG00000026663	Atf6	9130025P16Rik|9630036G24|AA789574|Atf6alpha|ESTM49	activating transcription factor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43925802-4	chr4	43925634	43925834	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016678, intron 12 of 20)	intron (NM_016678, intron 12 of 20)	-31968.0	NM_027450	384009.0	Mm.22213	NM_027450	ENSMUSG00000028480	Glipr2	5730414A08Rik|C77180|GAPR-1	GLI pathogenesis-related 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-67972748-3	chr5	67972645	67972845	+	703.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001256184, intron 2 of 3)	intron (NM_001256184, intron 2 of 3)	-29664.0	NR_038182	73865.0	Mm.66946	NR_038182	ENSMUSG00000106880	4930425K10Rik	-	RIKEN cDNA 4930425K10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46319260-2	chr19	46319160	46319360	+	897.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028627, intron 11 of 17)	intron (NM_028627, intron 11 of 17)	7606.0	NM_001347454	73728.0	Mm.268532	NM_028627	ENSMUSG00000037126	Psd	1110007H17Rik|A930015K15|Efa6|Efa6a|Psdl|mKIAA2011	pleckstrin and Sec7 domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-11334239-2	chr2	11334139	11334339	+	693.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-5250.0	NR_040369	100503147.0	Mm.91961	NR_040369	ENSMUSG00000086006	Gm13293	-	predicted gene 13293	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-80577434-2	chr17	80577334	80577534	+	554.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360143)	promoter-TSS (NM_001360143)	50.0	NM_001360143	381113.0	Mm.329216	NM_001033443	ENSMUSG00000033966	Cdkl4	AU067824|Gm942	cyclin-dependent kinase-like 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45134544-2	chr7	45134444	45134644	+	805.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_102725, intron 4 of 7)	intron (NR_102725, intron 4 of 7)	1888.0	NM_013520	14256.0	Mm.1658	NM_013520	ENSMUSG00000110206	Flt3l	Flt3lg|Ly72L	FMS-like tyrosine kinase 3 ligand	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-82824023-1	chr6	82823923	82824123	+	1000.0	f1_c57bl6.idr	Intergenic	Intergenic	-49569.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	0.453518838375261	0.16666890849454	-0.354825099493812	-0.35851875740158	-0.36375340398805	-0.348975952207183	-0.353770770627041	-0.35787285862642	-3.73770979452464	0.145254262361672	1
Merged-chr17-35667082-2	chr17	35666982	35667182	+	799.333313	f1_balb.idr|f1_c57bl6.idr	TTS (NM_010364)	TTS (NM_010364)	510.0	NM_175137	68915.0	Mm.32002	NM_175137	ENSMUSG00000038838	Vars2	1190004I24Rik|Vars2l|mKIAA1885	valyl-tRNA synthetase 2, mitochondrial	protein-coding	-0.495883733976474	-0.608695414002518	-0.611188040715951	-0.353861959855524	-0.385022506726583	-0.608129422389994	-0.610640838662708	-0.350044864530734	0.407038980408263	0.873568312263455	1
Merged-chr2-150850824-2	chr2	150850724	150850924	+	622.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_151505, intron 2 of 12)	intron (NR_151505, intron 2 of 12)	-8254.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-135825297-1	chr3	135825197	135825397	+	1000.0	f0_balb.idr	promoter-TSS (NM_001135150)	promoter-TSS (NM_001135150)	18.0	NM_026228	67547.0	Mm.30239	NM_026228	ENSMUSG00000053897	Slc39a8	4933419D20Rik|AA986696|BIGM103|ZIP-8|Zip8	solute carrier family 39 (metal ion transporter), member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-20742442-2	chr9	20742342	20742542	+	909.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357639, intron 1 of 5)	intron (NM_001357639, intron 1 of 5)	3854.0	NM_001357639	244723.0	Mm.293552	NM_173777	ENSMUSG00000032172	Olfm2	A030009A06Rik	olfactomedin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-116330679-2	chr7	116330579	116330779	+	584.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_026533)	TTS (NM_026533)	3511.0	NM_026533	68052.0	Mm.14798	NM_026533	ENSMUSG00000090862	Rps13	2700063M04Rik	ribosomal protein S13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-52528629-2	chr5	52528529	52528729	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37677.0	NM_001310604	246316.0	Mm.44721	NM_144945	ENSMUSG00000039252	Lgi2	mKIAA1916	leucine-rich repeat LGI family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107714189-2	chr9	107714089	107714289	+	693.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3714.0	NM_011349	20350.0	Mm.12903	NM_011349	ENSMUSG00000034684	Sema3f	Sema4|Semak	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F	protein-coding	0.00379728509335256	0.0223227650935696	0.0162762429372869	0.0115964251327399	0.404329279348759	0.0236828790103568	0.498729170245628	0.845975391942042	4.11007078877577	0.0550914756605845	1
Merged-chr11-32565356-4	chr11	32565255	32565455	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 2 of 18)	intron (NM_009288, intron 2 of 18)	32089.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-30810319-2	chr18	30810219	30810419	+	717.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	506809.0	NM_009065	19762.0	Mm.5163	NM_009065	ENSMUSG00000057455	Rit2	RIBA|Rin|Roc2	Ras-like without CAAX 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-131076893-2	chr2	131076793	131076993	+	663.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011426, intron 10 of 20)	intron (NM_011426, intron 10 of 20)	9872.0	NM_011426	20612.0	Mm.1374	NM_011426	ENSMUSG00000027322	Siglec1	Cd169|Siglec-1|Sn	sialic acid binding Ig-like lectin 1, sialoadhesin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-98717659-3	chr7	98717561	98717761	+	758.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028410, exon 5 of 5)	3' UTR (NM_028410, exon 5 of 5)	14414.0	NM_028410	72981.0	Mm.4428	NM_028410	ENSMUSG00000030753	Thap12	2900052B10Rik|Dap4|Prkrir|Rpkrir	THAP domain containing 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-20467291-3	chr9	20467202	20467402	+	799.399963	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR55|LTR|ERVL?	-7142.0	NM_001357809	22688.0	Mm.107441	NM_011753	ENSMUSG00000063108	Zfp26	5033428C05Rik|KRAB15|Zfp-26|Zfp70|Zfp81-rs1|mKIAA4196|mkr-3|mszf14|mszf52	zinc finger protein 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-112374398-2	chr6	112374298	112374498	+	625.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356365, intron 11 of 11)	intron (NM_001356365, intron 11 of 11)	13625.0	NM_001356365	243612.0	Mm.122653	NM_175525	ENSMUSG00000034387	Ssu2	D630042P16Rik|Fls485|Ssuh2	ssu-2 homolog (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78592926-2	chr15	78592826	78593026	+	559.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-4121.0	NM_028195	72318.0	Mm.32911	NM_028195	ENSMUSG00000018008	Cyth4	2510004M07Rik|5830469K17Rik|AI467541|Pscd4|mFLJ00017	cytohesin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-59037156-2	chr9	59037056	59037256	+	766.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001042752)	promoter-TSS (NM_001042752)	-715.0	NM_008684	18007.0	Mm.42249	NM_008684	ENSMUSG00000032340	Neo1	2610028H22Rik|AI327052|D930014N22Rik|Igdcc2	neogenin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-36958122-3	chr8	36957978	36958178	+	721.799988	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CCCCCA)n|Simple_repeat|Simple_repeat	-5636.0	NM_001194940	50768.0	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	0.778399431774651	0.651352983557117	0.483908504165019	0.322586303644356	0.157246969507789	0.174852519238972	0.344024746346801	0.164225855154596	-3.21530488401292	0.0942323638549882	1
Merged-chr5-29895120-4	chr5	29895027	29895227	+	796.450012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-117987.0	NM_001314054	16193.0	Mm.1019	NM_031168	ENSMUSG00000025746	Il6	Il-6	interleukin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-100554225-2	chr15	100554125	100554325	+	571.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER4B|LTR|ERVK	-2217.0	NM_001289603	21422.0	Mm.219040	NM_033476	ENSMUSG00000009733	Tfcp2	CP-2|CP2|D230015P20Rik|LBP-1c|LBP-1d|LBP1|LSF|Tcfcp2|UBP-1	transcription factor CP2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117332769-2	chr8	117332669	117332869	+	583.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	-16401.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-96483842-4	chr9	96483746	96483946	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5171.0	NM_001311135	19823.0	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-72410255-2	chr4	72410155	72410355	+	824.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	209011.0	NR_027923	68285.0	Mm.37541	NR_027923		C630043F03Rik	AI851307	RIKEN cDNA C630043F03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-92347157-2	chr5	92347057	92347257	+	616.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_021274, exon 4 of 4)	3' UTR (NM_021274, exon 4 of 4)	1732.0	NM_021274	15945.0	Mm.877	NM_021274	ENSMUSG00000034855	Cxcl10	C7|CRG-2|INP10|IP-10|IP10|Ifi10|Scyb10|gIP-10|mob-1	chemokine (C-X-C motif) ligand 10	protein-coding	0.624591475513405	1.7179724308314	0.652718895035232	0.642267403916206	1.21472711314895	0.669035083299733	1.34455549267261	1.59722824887283	0.841395072969719	0.599423321310558	0.972489093448672
Merged-chr18-69536730-2	chr18	69536630	69536830	+	565.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 6 of 19)	intron (NM_001361128, intron 6 of 19)	190570.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-41684157-2	chr5	41684055	41684255	+	861.0	f0_balb.idr|f1_balb.idr	intron (NM_001310592, intron 4 of 6)	Lx7|LINE|L1	23536.0	NM_001310592	100972.0	Mm.41555	NM_027295	ENSMUSG00000029128	Rab28	2700023P08Rik|AW496496	RAB28, member RAS oncogene family	protein-coding	2.24488415080055	2.77344240660884	1.73195831010888	2.88054819828922	2.26410113741944	3.45714139391734	2.70005011281015	2.24416560745219	0.552173740327732	0.495383446761588	0.935903410809185
Merged-chr17-35382481-2	chr17	35382381	35382581	+	580.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001143689, intron 3 of 5)	B1_Mm|SINE|Alu	2864.0	NM_001143689	15015.0	Mm.464284	NM_001143689	ENSMUSG00000035929	H2-Q4	H-2Q4|H2-Gs10|Qa-4|Qa4|Qat-4|Qb-1|Qb1	histocompatibility 2, Q region locus 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-16231511-6	chr1	16231410	16231610	+	802.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111272, intron 11 of 12)	intron (NM_001111272, intron 11 of 12)	125628.0	NM_133832	98711.0	Mm.274376	NM_133832	ENSMUSG00000025921	Rdh10	3110069K09Rik|4921506A21Rik|AI875664|AW549993|D1Ertd762e|m366Asp	retinol dehydrogenase 10 (all-trans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6532244-2	chr19	6532144	6532344	+	718.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001205235, exon 22 of 22)	3' UTR (NM_001205235, exon 22 of 22)	10826.0	NM_009203	20521.0	Mm.391146	NM_009203	ENSMUSG00000061742	Slc22a12	AI987855|OAT4L|Rst|Slc22al2|URAT1	solute carrier family 22 (organic anion/cation transporter), member 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-110710815-3	chr9	110710712	110710912	+	897.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028312, intron 5 of 6)	intron (NM_028312, intron 5 of 6)	31798.0	NM_001083936	19228.0	Mm.3542	NM_011199	ENSMUSG00000032492	Pth1r	PPR|Pthr|Pthr1	parathyroid hormone 1 receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5747211-3	chr19	5747111	5747311	+	910.288879	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008520, intron 7 of 27)	intron (NM_008520, intron 7 of 27)	6307.0	NM_008520	16998.0	Mm.182396	NM_008520	ENSMUSG00000024940	Ltbp3	Ltbp2|mFLJ00070	latent transforming growth factor beta binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-17815555-4	chr16	17815446	17815646	+	996.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-17573.0	NR_027959	433004.0	Mm.310200	NM_001002790		B830017H08Rik	-	RIKEN cDNA B830017H08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-48975210-4	chr2	48975099	48975299	+	986.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029924, intron 1 of 16)	intron (NM_029924, intron 1 of 16)	-24965.0	NM_001355296	26428.0	Mm.291059	NM_011958	ENSMUSG00000026761	Orc4	Orc4P|Orc4l|mMmORC4	origin recognition complex, subunit 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81870922-1	chr15	81870822	81871022	+	593.0	f1_c57bl6.idr	intron (NM_026737, intron 2 of 3)	intron (NM_026737, intron 2 of 3)	970.0	NM_026737	68479.0	Mm.271715	NM_026737	ENSMUSG00000061360	Phf5a	1110007B08Rik	PHD finger protein 5A	protein-coding	-1.06932346315282	-1.04545378193536	-0.220844647149311	-1.06494782147003	-1.06867040657128	-1.04264807175102	-1.05547001227371	-1.06448932552894	-3.08190232315036	0.346744811462451	1
Merged-chr1-166002817-4	chr1	166002701	166002901	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011137)	promoter-TSS (NM_011137)	-167.0	NM_198932	18986.0	Mm.245261	NM_011137	ENSMUSG00000026565	Pou2f1	2810482H01Rik|NF-A1|Oct-1|Oct1|Otf-1|Otf1	POU domain, class 2, transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-84268750-4	chr17	84268663	84268863	+	837.549988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183021, intron 30 of 37)	intron (NM_183021, intron 30 of 37)	-80816.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-70207271-4	chr9	70207158	70207358	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181072)	promoter-TSS (NM_181072)	-92.0	NM_181072	71602.0	Mm.249311	NM_181072	ENSMUSG00000032220	Myo1e	2310020N23Rik|9130023P14Rik|AA407778|myosin-1e|myr 3	myosin IE	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-106396507-2	chr1	106396407	106396607	+	743.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	150124.0	NR_106164	102466254.0		NR_106164	ENSMUSG00000098344	Mir3473f	Gm27846|mmu-mir-3473f	microRNA 3473f	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-103333419-4	chr15	103333314	103333514	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013866, intron 1 of 7)	intron (NM_013866, intron 1 of 7)	924.0	NM_001356627	29813.0	Mm.14099	NM_013866	ENSMUSG00000000552	Zfp385a	Hzf|Zfp385|Znf385a	zinc finger protein 385A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-51561235-4	chr3	51561146	51561346	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080793)	promoter-TSS (NM_080793)	-423.0	NM_080793	73251.0	Mm.192111	NM_080793	ENSMUSG00000037111	Setd7	1600028F23Rik|H3K4MT|KMT7|Set7|Set7/9|mKIAA1717	SET domain containing (lysine methyltransferase) 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-85398900-2	chr9	85398800	85399000	+	609.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-71750.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-120434035-3	chr9	120433933	120434133	+	728.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144557, intron 10 of 16)	intron (NM_144557, intron 10 of 16)	-58573.0	NM_026892	68969.0	Mm.28753	NM_026892	ENSMUSG00000006941	Eif1b	1500010M16Rik|3110001N14Rik|Gc20	eukaryotic translation initiation factor 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-135766703-2	chr2	135766603	135766803	+	724.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355154, intron 1 of 36)	intron (NM_001355154, intron 1 of 36)	1865.0	NM_001355154	18798.0	Mm.38009	NM_013829	ENSMUSG00000039943	Plcb4	A930039J07Rik|AI854601|C230058B11Rik	phospholipase C, beta 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-66062589-4	chr5	66062512	66062712	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139065, intron 2 of 6)	MIRb|SINE|MIR	35567.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	4.09942075962919	4.29316918257415	3.6892040698443	4.34488338616318	3.88431880022777	3.84363737161236	3.63340989852164	3.43186591595058	-0.58997715370114	0.199420841523413	0.682994044947012
Merged-chr7-29816034-4	chr7	29815932	29816132	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145880)	promoter-TSS (NM_001145880)	-40.0	NM_146185	233056.0	Mm.224766	NM_146185	ENSMUSG00000011427	Zfp790	6330581L23Rik	zinc finger protein 790	protein-coding	1.57137219354927	2.24946058223369	2.49808577141466	1.20461395817398	2.31409260005232	1.27027835883554	2.77331267055857	2.52634306794066	0.799351202914891	0.44365646807412	0.912075280648966
Merged-chr5-149222408-2	chr5	149222308	149222508	+	603.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37848.0	NM_001359957	231915.0	Mm.29402	NM_001013378	ENSMUSG00000041264	Uspl1	E430026A01Rik	ubiquitin specific peptidase like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32261581-2	chr2	32261481	32261681	+	665.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1476.0	NM_011675	22245.0	Mm.425076	NM_011675	ENSMUSG00000002550	Uck1	URK1|Umpk	uridine-cytidine kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-81675768-3	chr12	81675673	81675873	+	879.7333369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	44524.0	NM_001033149	69480.0	Mm.130002	NM_001033149	ENSMUSG00000042734	Ttc9	-	tetratricopeptide repeat domain 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16173651-2	chr7	16173551	16173751	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-1744.0	NM_001277988	17537.0	Mm.360516	NM_008627	ENSMUSG00000041420	Meis3	AI573393|Mrg2	Meis homeobox 3	protein-coding	-2.18138529563533	-2.15523716995652	-2.1631445789866	-2.16963996020037	-2.05513010215571	-2.15352360143315	-2.16135451490766	-2.16847729006863	0.759018020146679	0.829933115115583	1
Merged-chr11-86807763-4	chr11	86807689	86807889	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026191)	promoter-TSS (NM_026191)	-129.0	NM_026191	67487.0	Mm.260627	NM_026191	ENSMUSG00000018425	Dhx40	2410016C14Rik|ARG147|DDX40|PAD	DEAH (Asp-Glu-Ala-His) box polypeptide 40	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-17656060-1	chr10	17655960	17656160	+	706.666687	f0_balb.idr	Intergenic	Intergenic	-67168.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-84985586-1	chr16	84985486	84985686	+	747.0	f0_balb.idr	intron (NM_001198825, intron 12 of 15)	ORR1E|LTR|ERVL-MaLR	13375.0	NR_045889	100038614.0	Mm.441351	NR_045889	ENSMUSG00000115518	Gm10791	-	predicted gene 10791	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-88249152-2	chr1	88249052	88249252	+	737.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001281466, intron 27 of 41)	intron (NM_001281466, intron 27 of 41)	20256.0	NR_040291	78605.0	Mm.384762	NR_040291		6430706D22Rik	-	RIKEN cDNA 6430706D22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-88902287-4	chr6	88902179	88902379	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011906)	promoter-TSS (NM_011906)	28.0	NM_011906	24100.0	Mm.284480	NM_011906	ENSMUSG00000002871	Tpra1	40kDa|Gpr175|Tpra40	transmembrane protein, adipocyte asscociated 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-45911907-3	chr9	45911854	45912054	+	817.25	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104055, intron 5 of 17)	intron (NR_104055, intron 5 of 17)	-5043.0	NM_001361112	235315.0	Mm.220945	NM_178709	ENSMUSG00000042790	Rnf214	D130054N24Rik	ring finger protein 214	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-85840752-4	chr8	85840667	85840867	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199446)	promoter-TSS (NM_199446)	182.0	NM_028007	71927.0	Mm.61018	NM_028007	ENSMUSG00000031703	Itfg1	2310047C21Rik|AI314457|Cda08|D8Wsu49e	integrin alpha FG-GAP repeat containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24716439-2	chr17	24716339	24716539	+	861.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_026205, exon 4 of 4)	exon (NM_026205, exon 4 of 4)	1618.0	NM_026205	67504.0	Mm.46159	NM_026205	ENSMUSG00000008482	Rnf151	1700010O16Rik|AV047371	ring finger protein 151	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-26979204-4	chr8	26979116	26979316	+	978.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001101502, exon 2 of 2)	exon (NM_001101502, exon 2 of 2)	1880.0	NM_001110508	353310.0	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-100505991-3	chr5	100505884	100506084	+	782.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	-5345.0	NM_001359914	231506.0	Mm.212568	NM_172714	ENSMUSG00000035310	Lin54	AI461788	lin-54 homolog (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-140701947-4	chr4	140701850	140702050	+	965.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173867, intron 1 of 12)	CpG	477.0	NM_173867	108911.0	Mm.253	NM_173867	ENSMUSG00000040945	Rcc2	2610510H01Rik|2610529N02Rik|AA536646|AA675016|Td60|mKIAA1470	regulator of chromosome condensation 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55662331-1	chr19	55662231	55662431	+	640.0	f0_balb.idr	intron (NR_045318, intron 2 of 3)	intron (NR_045318, intron 2 of 3)	39873.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-88095082-4	chr1	88094996	88095196	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_201642)	promoter-TSS (NM_201642)	95.0	NM_201642	394432.0	Mm.300095	NM_201642	ENSMUSG00000090124	Ugt1a7c	A10'|A13|Ugt1a10	UDP glucuronosyltransferase 1 family, polypeptide A7C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30091411-3	chr7	30091281	30091481	+	778.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_152814)	promoter-TSS (NM_152814)	-871.0	NM_152814	72556.0	Mm.441512	NM_152814	ENSMUSG00000078768	Zfp566	2700043M03Rik|mszf4	zinc finger protein 566	protein-coding	3.02710607880653	4.16406567988466	4.28380153946298	3.46608073926169	3.76526096981836	2.14609776780835	3.59457421053605	3.63454697374528	-0.583138614350456	0.333616865911977	0.833601405219443
Merged-chr8-84654818-2	chr8	84654718	84654918	+	670.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	8034.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-58566689-4	chr2	58566478	58566678	+	961.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289660)	promoter-TSS (NM_001289660)	250.0	NM_001110205	11477.0	Mm.689	NM_007394	ENSMUSG00000026836	Acvr1	ALK2|ActR-I|ActRIA|Acvr|Acvrlk2|Alk-2|Alk8|D330013D15Rik|SKR1|Tsk7L	activin A receptor, type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-24407420-3	chr18	24407303	24407503	+	668.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21767.0	NR_029573	387182.0		NR_029573	ENSMUSG00000065532	Mir187	Mirn187|mir-187|mmu-mir-187	microRNA 187	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-43962411-2	chr13	43962311	43962511	+	741.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-158756.0	NR_045285	328235.0	Mm.188356	NR_045285	ENSMUSG00000089815	Gm5083	A730030A06	predicted gene 5083	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-25292026-2	chr2	25291926	25292126	+	747.200012	f1_balb.idr|f1_c57bl6.idr	TTS (NM_146117)	TTS (NM_146117)	806.0	NM_001242940	320354.0	Mm.445875	NM_001242940		Grin1os	E130003G02Rik	glutamate receptor, ionotropic, NMDA1 (zeta 1), opposite strand	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118133692-2	chr11	118133592	118133792	+	602.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4473.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132803018-2	chr4	132802918	132803118	+	576.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-6654.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55686820-1	chr19	55686720	55686920	+	995.0	f1_c57bl6.idr	intron (NR_045318, intron 2 of 3)	intron (NR_045318, intron 2 of 3)	15384.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	1.0427609239231	0.187337744133144	0.178987387173623	0.172477531051708	0.477468806185227	0.189206947795418	1.13724892048036	0.173619151564792	0.502811465899421	0.805758515182551	1
Merged-chr4-148088959-2	chr4	148088859	148089059	+	791.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001301281)	promoter-TSS (NM_001301281)	-895.0	NM_001301281	11610.0	Mm.46247	NM_009642	ENSMUSG00000029007	Agtrap	3300002E14Rik|AT1R|Atrap|D4Wsu124e	angiotensin II, type I receptor-associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-11116162-2	chr11	11116062	11116262	+	767.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_177033, exon 2 of 4)	exon (NM_177033, exon 2 of 4)	2146.0	NM_177033	319922.0	Mm.337851	NM_177033	ENSMUSG00000050830	Vwc2	A930041G11Rik|G11|PSST739|UNQ739|cradin	von Willebrand factor C domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-128924373-4	chr4	128924288	128924488	+	908.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38067.0	NM_172875	242669.0	Mm.215814	NM_172875	ENSMUSG00000028789	Azin2	4933429I20Rik|Adc|Azi2|B930082O19|ODC-p|Odcp	antizyme inhibitor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-101841440-4	chr13	101841336	101841536	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73219.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-10429646-2	chr11	10429546	10429746	+	708.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus1|LINE|L1	-684370.0	NM_177033	319922.0	Mm.337851	NM_177033	ENSMUSG00000050830	Vwc2	A930041G11Rik|G11|PSST739|UNQ739|cradin	von Willebrand factor C domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-46915704-4	chr14	46915600	46915800	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037221, intron 2 of 12)	intron (NM_001037221, intron 2 of 12)	32735.0	NM_001037221	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	2.24846671185426	1.69475254848304	1.02790148219308	1.42656551754262	1.86475043450969	1.05625399270794	2.47709870191394	1.4338098942578	0.385193335038733	0.745961477992489	0.998431161219273
Merged-chr12-85781853-4	chr12	85781755	85781955	+	823.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145447, intron 1 of 9)	intron (NM_145447, intron 1 of 9)	35316.0	NM_145447	217721.0	Mm.301076	NM_145447	ENSMUSG00000034258	Flvcr2	CCT|Mfsd7c	feline leukemia virus subgroup C cellular receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-47251306-4	chr13	47251208	47251408	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	57305.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	2.79736889013391	2.21433257942315	2.43564251634547	2.78377471468174	2.26449460018436	2.23041706737296	3.38478978021174	2.0921363107675	0.0769507209226122	0.923165525224874	0.998431161219273
Merged-chr14-50830110-4	chr14	50830000	50830200	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009351, intron 45 of 54)	G-rich|Low_complexity|Low_complexity	22184.0	NM_009632	11546.0	Mm.281482	NM_009632	ENSMUSG00000036023	Parp2	ADPRT-2|ARTD2|Adprt2|Adprtl2|Aspartl2|C78626|PARP-2|mPARP-2|pADPRT-2	poly (ADP-ribose) polymerase family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-57714445-4	chr10	57714370	57714570	+	801.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008863, intron 4 of 5)	intron (NM_008863, intron 4 of 5)	63489.0	NM_001190402	18768.0	Mm.262135	NM_008863	ENSMUSG00000019876	Pkib	Pkibeta|Prkacn2	protein kinase inhibitor beta, cAMP dependent, testis specific	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117426099-2	chr8	117425999	117426199	+	807.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028941, intron 6 of 20)	L1MC1|LINE|L1	-26924.0	NR_106045	102466801.0		NR_106045	ENSMUSG00000099062	Mir7077	Gm27774|mmu-mir-7077	microRNA 7077	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167631293-4	chr2	167631264	167631464	+	950.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311131, intron 1 of 4)	CpG	641.0	NM_001311146	66589.0	Mm.278783	NM_023230	ENSMUSG00000078923	Ube2v1	0610011J09Rik|AI256840|CROC-1|CROC1|D7Bwg1382e|UEV-1	ubiquitin-conjugating enzyme E2 variant 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-56616554-4	chr13	56616470	56616670	+	989.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155548, intron 2 of 16)	intron (NR_155548, intron 2 of 16)	6984.0	NR_155548	21810.0	Mm.14455	NM_009369	ENSMUSG00000035493	Tgfbi	68kDa|AI181842|AI747162|Beta-ig|big-h3	transforming growth factor, beta induced	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-79209251-4	chr15	79209119	79209319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_029470, intron 2 of 4)	intron (NR_029470, intron 2 of 4)	-19954.0	NM_008837	18693.0	Mm.259464	NM_008837	ENSMUSG00000068206	Pick1	Prkcabp	protein interacting with C kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-51931031-1	chr14	51930931	51931131	+	671.0	f0_balb.idr	Intergenic	Intergenic	-8258.0	NM_001011687	497071.0	Mm.378602	NM_001011687	ENSMUSG00000068392	Rnase13	-	ribonuclease, RNase A family, 13 (non-active)	protein-coding	2.11592441750969	1.42431882390582	2.40723325921331	2.34026272078749	2.13302028514947	2.50867153621798	2.80084048555736	2.35215765078623	0.785366359193775	0.369277856542367	0.863136285888838
Merged-chr13-101764229-2	chr13	101764129	101764329	+	887.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077495, intron 1 of 15)	intron (NM_001077495, intron 1 of 15)	3988.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-119338526-2	chr9	119338426	119338626	+	965.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010851, intron 2 of 5)	intron (NM_010851, intron 2 of 5)	1514.0	NM_010851	17874.0	Mm.213003	NM_010851	ENSMUSG00000032508	Myd88	-	myeloid differentiation primary response gene 88	protein-coding	-1.84303373260285	-1.81303463126392	-1.82210660711932	-1.82955859819738	-1.84092785115721	-1.81106869625141	-1.8200529106377	-1.54273750312762	1.50114612804783	0.670102668014672	1
Merged-chr6-71633478-4	chr6	71633374	71633574	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173001)	promoter-TSS (NM_173001)	-557.0	NM_001362200	104263.0	Mm.260479	NM_173001	ENSMUSG00000053470	Kdm3a	1700105C21Rik|C230043E16Rik|JHDM2a|Jmjd1|Jmjd1a|KDM2A|TGSA|Tsga	lysine (K)-specific demethylase 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-55028656-4	chr11	55028553	55028753	+	975.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_138556, intron 1 of 24)	intron (NR_138556, intron 1 of 24)	4818.0	NR_138556	11749.0	Mm.265347	NM_013472	ENSMUSG00000018340	Anxa6	AW107198|Anx6|AnxVI|Cabm|Camb	annexin A6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-78350969-4	chr12	78350857	78351057	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172952, intron 2 of 23)	LSU-rRNA_Hsa|rRNA|rRNA	124302.0	NM_145965	268566.0	Mm.341742	NM_145965	ENSMUSG00000047454	Gphn	5730552E08Rik|AI662856|BC027112|C230040D23|GPH|GPHRYN|geph	gephyrin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101255459-2	chr15	101255359	101255559	+	574.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-11387.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	2.06150281056994	3.1185865738512	1.13760059670785	1.58838292499545	2.45298299109395	2.68558802193498	1.14552386342162	1.59724890689372	-0.202814419379344	0.853629662594048	0.998431161219273
Merged-chr6-72100020-2	chr6	72099920	72100120	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011375, intron 1 of 6)	MTD|LTR|ERVL-MaLR	2412.0	NM_011375	20454.0	Mm.38248	NM_011375	ENSMUSG00000056091	St3gal5	3S-T|Siat9|[a]2	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-63754673-2	chr17	63754573	63754773	+	548.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-109308.0	NM_001037997	14158.0	Mm.23039	NM_008000	ENSMUSG00000000127	Fer	AV082135|C330004K01Rik|Fert|Fert2	fer (fms/fps related) protein kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-27670295-4	chr15	27670202	27670402	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198301, intron 1 of 6)	intron (NM_198301, intron 1 of 6)	11240.0	NM_001242424	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6952445-4	chr19	6952349	6952549	+	876.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_007522)	TTS (NM_007522)	9887.0	NM_001285453	12015.0	Mm.4387	NM_007522	ENSMUSG00000024959	Bad	AI325008|Bbc2	BCL2-associated agonist of cell death	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122848758-1	chr5	122848658	122848858	+	586.0	f1_balb.idr	Intergenic	Intergenic	-1430.0	NM_030564	80751.0	Mm.388529	NM_030564	ENSMUSG00000029474	Rnf34	AW061037|AW536122|BC004042|C88279|RIFF	ring finger protein 34	protein-coding	1.41086738918235	1.46094646107685	0.905438605084519	1.48922390694684	1.42277353699092	0.921826575743902	1.65916409176419	1.49725684289174	0.25909814631479	0.840388651904445	0.998431161219273
Merged-chr13-18795084-4	chr13	18794996	18795196	+	896.866699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172120, intron 7 of 28)	intron (NM_172120, intron 7 of 28)	77804.0	NM_172120	218035.0	Mm.27389	NM_172120	ENSMUSG00000041236	Vps41	AI317346|Vam2|mVam2	VPS41 HOPS complex subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-83802724-4	chr7	83802625	83802825	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7886.0	NM_029335	75556.0	Mm.17649	NM_029335	ENSMUSG00000011154	Cfap161	1700026D08Rik|AW047638|AW551802	cilia and flagella associated protein 161	protein-coding	5.28079092818517	5.65706795130781	4.79154456962782	6.04895945340147	5.85902055579542	5.40138495788667	6.05500951978958	6.45155813932254	0.531062114141902	0.0901392905081806	0.463712523098447
Merged-chr1-137921781-4	chr1	137921700	137921900	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44655.0	NR_029795	735252.0		NR_029795	ENSMUSG00000065565	Mir181a-1	Mirn181a-1|Mirn213|miR-213|mir-181a-1|mmu-mir-213	microRNA 181a-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-31857985-2	chr17	31857885	31858085	+	596.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2181.0	NM_010831	17691.0	Mm.290941	NM_010831	ENSMUSG00000024042	Sik1	Hrt-20|Msk|Sik|Sik-1|Snf1lk	salt inducible kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-50061936-4	chr16	50061867	50062067	+	992.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045935, intron 1 of 3)	L1_Mus2|LINE|L1	10885.0	NR_045935	224180.0	Mm.146439	NM_175010		Gm4827	B130050K08|EG224180	predicted gene 4827	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-69538108-4	chr12	69537948	69538148	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44980.0	NM_001033236	207965.0	Mm.102487	NM_001033236	ENSMUSG00000049882	Vcpkmt	Gm71|Mettl21d|Mettl221d|VCP-KMT	valosin containing protein lysine (K) methyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53592485-1	chr4	53592385	53592585	+	545.0	f1_c57bl6.idr	intron (NM_133891, intron 15 of 15)	intron (NM_133891, intron 15 of 15)	-38986.0	NM_176966	319636.0	Mm.103464	NM_176966	ENSMUSG00000054752	Fsd1l	A230072O16Rik|Ccdc10|Csdufd1|Fsd1nl	fibronectin type III and SPRY domain containing 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-94591144-2	chr11	94591044	94591244	+	715.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153807, intron 1 of 15)	RLTR20B3|LTR|ERVK	10642.0	NM_153807	264895.0	Mm.386885	NM_153807	ENSMUSG00000076435	Acsf2	-	acyl-CoA synthetase family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-5263188-2	chr11	5263088	5263288	+	741.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1578.0	NM_032396	84035.0	Mm.209989	NM_032396	ENSMUSG00000020393	Kremen1	AV002070|Kremen|Krm1	kringle containing transmembrane protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76069841-4	chr15	76069734	76069934	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134089)	promoter-TSS (NM_134089)	-50.0	NM_001310542	105782.0	Mm.25568	NM_134089	ENSMUSG00000022568	Scrib	AI118201|CRIB|Crc|SCRIB1|Scrb1|mKIAA0147|vartul	scribbled planar cell polarity	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-41499465-4	chr7	41499372	41499572	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001033530, exon 1 of 4)	5' UTR (NM_001033530, exon 1 of 4)	418.0	NM_001033530	101835.0	Mm.370336	NM_001033530	ENSMUSG00000074166	AW146154	AI451288	expressed sequence AW146154	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94537278-4	chr10	94537171	94537371	+	852.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172051, intron 1 of 3)	B2_Mm1t|SINE|B2	-13601.0	NM_001359761	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32081507-4	chr2	32081416	32081616	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151493, intron 2 of 5)	intron (NR_151493, intron 2 of 5)	2189.0	NM_175511	241303.0	Mm.250441	NM_175511	ENSMUSG00000050592	Fam78a	A130092J06Rik	family with sequence similarity 78, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134070084-4	chr6	134069982	134070182	+	942.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 2 of 8)	intron (NM_001303102, intron 2 of 8)	34382.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-130318939-4	chr10	130318829	130319029	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3923.0	NM_183264	67596.0	Mm.131264	NM_183264	ENSMUSG00000034833	Tespa1	5830405N20Rik|A430001F24Rik|AI450549	thymocyte expressed, positive selection associated 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-8597094-4	chr11	8597006	8597206	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 3 of 30)	intron (NM_001083587, intron 3 of 30)	67429.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-77276133-2	chr5	77276033	77276233	+	829.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011263, intron 3 of 3)	B3|SINE|B2	3376.0	NR_039557	100628577.0		NR_039557	ENSMUSG00000093061	Mir5098	mmu-mir-5098|mu-mir-5098	microRNA 5098	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-67275538-4	chr14	67275448	67275648	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360202, intron 6 of 15)	intron (NM_001360202, intron 6 of 15)	39163.0	NM_001037931	628416.0	Mm.390723	NM_001037931		Gm6878	EG628416	predicted gene 6878	protein-coding	3.07529834284564	2.85738655151431	2.63504349034567	3.65717678931762	2.8648991180123	2.8782279761586	2.89878463779257	2.69837946848165	-0.520048845550655	0.427955178367444	0.902927130518563
Merged-chr9-123840492-4	chr9	123840388	123840588	+	983.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110253, intron 3 of 17)	intron (NM_001110253, intron 3 of 17)	11173.0	NM_148925	17281.0	Mm.252941	NM_148925	ENSMUSG00000025241	Fyco1	2810409M01Rik|Mem2|RUFY3|ZFYVE7	FYVE and coiled-coil domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-96988311-2	chr11	96988211	96988411	+	781.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10623.0	NM_001080964	78912.0	Mm.491183	NM_030220	ENSMUSG00000018678	Sp2	4930480I16Rik|mKIAA0048	Sp2 transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-20424315-4	chr8	20424218	20424418	+	974.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028428, intron 1 of 5)	CpG	496.0	NR_028428	381598.0	Mm.359054	NM_001024708	ENSMUSG00000071793	2610005L07Rik	2810038F24Rik|6720476A01Rik	cadherin 11 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-188569232-2	chr1	188569132	188569332	+	725.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021408, intron 29 of 70)	B4|SINE|B4	306394.0	NM_021408	22283.0	Mm.331238	NM_021408	ENSMUSG00000026609	Ush2a	A930011D15Rik|A930037M10Rik|Gm676|Gm983|Mush2a|Ushrn	usherin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-156109877-4	chr4	156109776	156109976	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145557)	promoter-TSS (NM_145557)	-122.0	NM_145557	230996.0	Mm.318925	NM_145557	ENSMUSG00000059939	9430015G10Rik	-	RIKEN cDNA 9430015G10 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-156312587-4	chr2	156312486	156312686	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001316755, exon 1 of 10)	exon (NM_001316755, exon 1 of 10)	113.0	NM_001316755	70873.0	Mm.475234	NM_027585	ENSMUSG00000038085	Cnbd2	4921517L17Rik|5430421B09Rik|Cris	cyclic nucleotide binding domain containing 2	protein-coding	4.9747844200841	5.03432981187947	4.70640531230813	5.11381149221815	5.14804859269006	5.26033927491096	4.48219958294929	4.8970894732994	0.0147966138317608	0.964108140173878	0.998431161219273
Merged-chr6-50075535-3	chr6	50075507	50075707	+	831.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34634.0	NM_019939	56524.0	Mm.41288	NM_008016	ENSMUSG00000038388	Mpp6	P55t|Pals2	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-138095311-4	chr6	138095203	138095403	+	968.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15387.0	NM_177787	277898.0	Mm.269823	NM_177787	ENSMUSG00000044378	Slc15a5	9830102E05Rik	solute carrier family 15, member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56081920-2	chr17	56081820	56082020	+	573.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_008233, intron 1 of 15)	intron (NM_008233, intron 1 of 15)	2289.0	NM_001304785	15193.0	Mm.12966	NM_008233	ENSMUSG00000002833	Hdgfl2	HRP-2|Hdgfrp2	HDGF like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-25579952-2	chr17	25579861	25580061	+	823.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045520, intron 1 of 8)	intron (NR_045520, intron 1 of 8)	787.0	NR_045520	76483.0	Mm.12787	NM_029624	ENSMUSG00000002279	Lmf1	2400010G15Rik|AW822050|Tmem112|cld	lipase maturation factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-52330760-2	chr10	52330660	52330860	+	890.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	51364.0	NM_053187	94221.0	Mm.390258	NM_053187	ENSMUSG00000019861	Gopc	2210402P09Rik|AI844555|CAL|FIG|GOPC1|PIST	golgi associated PDZ and coiled-coil motif containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-159840298-4	chr3	159840189	159840389	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356350, intron 1 of 12)	intron (NM_001356350, intron 1 of 12)	639.0	NM_001356350	68151.0	Mm.6766	NM_026582	ENSMUSG00000028173	Wls	5031439A09Rik|AI173978|AI987742|EVI|Gpr177	wntless WNT ligand secretion mediator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-38819263-4	chr19	38819176	38819376	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021315)	promoter-TSS (NM_021315)	-39.0	NM_021315	57753.0	Mm.86482	NM_021315	ENSMUSG00000024999	Noc3l	AF233884|Fad24	NOC3 like DNA replication regulator	protein-coding	3.81456230929929	2.64925134629359	3.49440438970581	3.399536431431	3.25638550093826	2.4948227495897	3.3658367152394	2.63943000053427	-0.685031057467213	0.280533245052943	0.783412873231201
Merged-chr4-32121710-1	chr4	32121610	32121810	+	941.0	f1_balb.idr	Intergenic	RMER1A|Other|Other	157603.0	NM_172688	26409.0	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46056499-4	chr19	46056432	46056632	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081214)	promoter-TSS (NM_001081214)	-7.0	NM_001346801	226169.0	Mm.2415	NM_145504	ENSMUSG00000055491	Pprc1	A930018M19|BC013720|PRC|mKIAA0595	peroxisome proliferative activated receptor, gamma, coactivator-related 1	protein-coding	3.03806881676959	3.75637577759473	3.79411157393345	4.38794820586623	4.98483388269627	4.24291500116251	3.23532679769486	4.69053941844977	0.821193235724266	0.113745705598473	0.528279087395026
Merged-chr4-83324289-4	chr4	83324199	83324399	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027238)	promoter-TSS (NM_027238)	-110.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-115307634-4	chr8	115307536	115307736	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019573, intron 8 of 8)	intron (NM_019573, intron 8 of 8)	399258.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-121545991-4	chr5	121545883	121546083	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010765)	promoter-TSS (NM_010765)	-91.0	NM_010765	17165.0	Mm.272206	NM_010765	ENSMUSG00000029454	Mapkapk5	MK5|PRAK	MAP kinase-activated protein kinase 5	protein-coding	-2.18292257394068	-2.15545247547656	-2.03304972317742	-2.17058342868585	-2.18099422382073	-2.1536522739386	-2.16187909550322	-2.16936197735154	-0.683654500252594	0.846597994014493	1
Merged-chr6-145342536-2	chr6	145342437	145342637	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45088.0	NR_003625	381827.0	Mm.179075	NM_001001987		1700073E17Rik	-	ribosomal protein L7 pseudogene	pseudo	2.53828728819119	2.67368225214365	1.78761215684546	2.89176237141615	1.66737883386053	2.35197824296193	1.32793803267228	2.31765877359751	-1.25443512597917	0.176534808894323	0.646313670384576
Merged-chr1-180877764-2	chr1	180877664	180877864	+	634.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-15344.0	NM_177099	320202.0	Mm.87078	NM_177099	ENSMUSG00000066652	Lefty2	6030463A22Rik|Ebaf|Lefta|Leftb|lefty-2|lefty-B	left-right determination factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-119444435-3	chr13	119444340	119444540	+	920.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145457, intron 4 of 10)	intron (NM_145457, intron 4 of 10)	15538.0	NM_145457	218693.0	Mm.490243	NM_145457	ENSMUSG00000025451	Paip1	PAIP-1	polyadenylate binding protein-interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-66259899-3	chr5	66259822	66260022	+	838.25	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	promoter-TSS (NM_027602)	promoter-TSS (NM_027602)	24.0	NM_001302834	70918.0	Mm.23166	NM_027602	ENSMUSG00000029206	Nsun7	4921525L17Rik	NOL1/NOP2/Sun domain family, member 7	protein-coding	1.80375432631751	0.856481873264232	1.0920751832107	2.67233292276945	1.49338098952945	0.861644725810958	1.78063933555387	0.817543955040226	-1.44693555679143	0.277124406540375	0.781366007374687
Merged-chr8-72281800-4	chr8	72281687	72281887	+	940.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37275.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-52104250-4	chr14	52104147	52104347	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360176)	promoter-TSS (NM_001360176)	-226.0	NM_001360180	15381.0	Mm.427321	NM_016884	ENSMUSG00000060373	Hnrnpc	AL022939|D14Wsu171e|Hnrpc|Hnrpc1|Hnrpc2|hnRNPC1|hnRNPC2|hnrnp-C	heterogeneous nuclear ribonucleoprotein C	protein-coding	5.76758340724364	5.53088526154364	5.54341102915309	4.53701020098811	5.77056544509259	5.79214896832957	5.31193219564393	4.91755637036216	0.0848847604132575	0.79769382755892	0.998431161219273
Merged-chr16-44121030-3	chr16	44120968	44121168	+	702.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007508, intron 1 of 14)	intron (NM_007508, intron 1 of 14)	18191.0	NM_001358203	11964.0	Mm.217787	NM_007508	ENSMUSG00000052459	Atp6v1a	AI647066|Atp6a1|Atp6a2|Atp6v1a1|VA68|VPP2	ATPase, H+ transporting, lysosomal V1 subunit A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-96484158-2	chr7	96484058	96484258	+	671.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011858, intron 3 of 32)	intron (NM_011858, intron 3 of 32)	-142194.0	NR_046043	670727.0	Mm.421352	NR_046043	ENSMUSG00000085751	Gm15412	-	predicted gene 15412	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-108214734-4	chr6	108214639	108214839	+	990.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 2 of 61)	intron (NM_010585, intron 2 of 61)	1643.0	NM_010585	16438.0	Mm.227912	NM_010585	ENSMUSG00000030102	Itpr1	D6Pas2|Gm10429|IP3R 1|IP3R1|InsP3R|Ip3r|Itpr-1|P400|Pcp-1|Pcp1|insP3R1|opt|wblo	inositol 1,4,5-trisphosphate receptor 1	protein-coding	3.41337147615394	4.32058627925819	4.67354922950946	1.91700550992632	3.51145638577076	3.78495810309611	2.6436053606891	3.3815601156613	-0.771129834656691	0.250520424407058	0.748509191602971
Merged-chr10-84488509-3	chr10	84488404	84488604	+	762.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_108059, exon 1 of 4)	non-coding (NR_108059, exon 1 of 4)	211.0	NR_108059	75804.0		NR_108059	ENSMUSG00000020033	4930463O16Rik	-	RIKEN cDNA 4930463O16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-9082790-3	chr13	9082681	9082881	+	817.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11100.0	NM_001311117	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-27838564-4	chr7	27838476	27838676	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011762)	promoter-TSS (NM_011762)	-8.0	NM_011762	22717.0	Mm.379046	NM_011762	ENSMUSG00000078779	Zfp59	Mfg-2|Mfg2	zinc finger protein 59	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-55838772-2	chr1	55838672	55838872	+	638.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-92469.0	NR_045837	329159.0	Mm.98697	NR_045837	ENSMUSG00000099950	9130227L01Rik	-	RIKEN cDNA 9130227L01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-116122944-4	chr3	116122857	116123057	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011693, intron 4 of 8)	intron (NM_011693, intron 4 of 8)	6731.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	2.15215487961528	2.11625823561553	2.64054446606741	2.80579200848178	2.16912031597315	2.13081704516965	2.06489325380585	2.48804768795679	-0.565356507013031	0.491751718360793	0.934778891402914
Merged-chr11-96310338-1	chr11	96310238	96310438	+	541.0	f0_balb.idr	Intergenic	Intergenic	-3428.0	NR_131758	75395.0	Mm.440014	NR_131758	ENSMUSG00000085645	Hoxb5os	0610040B09Rik|AV302770|Hoxb5/6as	homeobox B5 and homeobox B6, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-98415665-4	chr7	98415558	98415758	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24758.0	NM_001130693	14918.0	Mm.389928	NM_001034890	ENSMUSG00000074003	Gucy2d	-	guanylate cyclase 2d	protein-coding	2.87455132191686	3.33793495115029	3.31885715433945	2.92688345342027	3.77999765155353	2.54978431414407	3.85301252739168	3.74209446238005	0.729090434065291	0.220238448067703	0.711475740419037
Merged-chr1-91078876-2	chr1	91078776	91078976	+	792.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008515, intron 5 of 22)	intron (NM_008515, intron 5 of 22)	25432.0	NM_001310732	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-27615524-6	chr3	27615353	27615553	+	977.944458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356953, intron 4 of 26)	intron (NM_001356953, intron 4 of 26)	-30458.0	NR_037275	100526525.0		NR_037275	ENSMUSG00000092695	Mir3092	mir-3092|mmu-mir-3092	microRNA 3092	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-36546721-4	chr5	36546736	36546936	+	573.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133910, intron 2 of 13)	intron (NM_133910, intron 2 of 13)	-16213.0	NM_001113364	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-66555560-4	chr15	66555453	66555653	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172514, intron 3 of 9)	intron (NM_172514, intron 3 of 9)	5493.0	NM_172514	213068.0	Mm.132299	NM_172514	ENSMUSG00000036944	Tmem71	AI661017|E430024D12	transmembrane protein 71	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-130255004-2	chr5	130254904	130255104	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178897)	promoter-TSS (NM_178897)	526.0	NM_023248	66711.0	Mm.280484	NM_023248	ENSMUSG00000025337	Sbds	4733401P19Rik|AI836084|CGI-97|SDS	SBDS ribosome maturation factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-52458881-4	chr3	52458774	52458974	+	918.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58090.0	NR_153344	102631981.0	Mm.394225	NR_153344		Gm30173	-	predicted gene, 30173	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-40986301-3	chr8	40986178	40986378	+	808.277771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026840, intron 4 of 5)	intron (NM_026840, intron 4 of 5)	-31190.0	NR_015457	78849.0	Mm.440930	NR_015457	ENSMUSG00000084960	B430010I23Rik	-	RIKEN cDNA B430010I23 gene	ncRNA	2.47581751789853	2.30305260480582	2.99782390441317	2.02569810000975	2.40598872564778	2.1629201029712	2.49553111185444	2.17951092287133	-0.420044648107635	0.60338685740453	0.973569682278458
Merged-chr4-58470452-1	chr4	58470352	58470552	+	569.0	f0_c57.idr	intron (NM_172989, intron 3 of 3)	intron (NM_172989, intron 3 of 3)	28951.0	NM_001290486	14745.0	Mm.4772	NM_010336	ENSMUSG00000038668	Lpar1	AI326300|Edg2|Gpcr26|Kdt2|lpA1|vzg-1	lysophosphatidic acid receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-83708002-3	chr17	83707917	83708117	+	869.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054082, intron 1 of 16)	B1F1|SINE|Alu	1854.0	NM_001171052	116871.0	Mm.277668	NM_054082	ENSMUSG00000055817	Mta3	1110002J22Rik|mKIAA1266	metastasis associated 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98837373-2	chr11	98837273	98837473	+	749.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001080925, exon 1 of 15)	exon (NM_001080925, exon 1 of 15)	588.0	NM_001080925	268480.0	Mm.340766	NM_001080925	ENSMUSG00000038020	Rapgefl1	B230105J10	Rap guanine nucleotide exchange factor (GEF)-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80897705-2	chr10	80897605	80897805	+	836.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081688, intron 15 of 17)	intron (NM_001081688, intron 15 of 17)	3264.0	NM_013895	30055.0	Mm.142132	NM_013895	ENSMUSG00000020219	Timm13	D10Ertd378e|Tim9|Timm9	translocase of inner mitochondrial membrane 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-34266194-4	chr7	34266087	34266287	+	857.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172741, intron 1 of 12)	intron (NM_172741, intron 1 of 12)	19422.0	NM_172741	233103.0	Mm.491097	NM_172741	ENSMUSG00000066571	4931406P16Rik	AA553327|mKIAA0355	RIKEN cDNA 4931406P16 gene	protein-coding	-0.133577490940407	-0.276312777815883	-0.443417027848361	-0.445501575855081	-0.126459351319749	-0.27234417285222	-0.442817386580239	-0.445138873604566	0.040964281577343	0.986726794986629	1
Merged-chr19-56474990-4	chr19	56474875	56475075	+	825.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172641, intron 7 of 12)	intron (NM_172641, intron 7 of 12)	13338.0	NM_172641	226245.0	Mm.156742	NM_172641	ENSMUSG00000035818	Plekhs1	9930023K05Rik	pleckstrin homology domain containing, family S member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-50946536-2	chr9	50946440	50946640	+	662.25	f0_balb.idr|f0_c57.idr	intron (NM_178710, intron 3 of 15)	intron (NM_178710, intron 3 of 15)	62533.0	NM_178710	235344.0	Mm.104932	NM_178710	ENSMUSG00000037112	Sik2	G630080D20Rik|Snf1lk2	salt inducible kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84567689-4	chr8	84567595	84567795	+	928.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007578, exon 21 of 47)	exon (NM_007578, exon 21 of 47)	95157.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-113773933-4	chr5	113773854	113774054	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025526, intron 1 of 4)	intron (NM_025526, intron 1 of 4)	1142.0	NM_025526	66383.0	Mm.29497	NM_025526	ENSMUSG00000025825	Iscu	2310020H20Rik|AA407971|Nifu|Nifun	iron-sulfur cluster assembly enzyme	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-43123619-4	chr10	43123515	43123715	+	947.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175407, intron 4 of 6)	Lx6|LINE|L1	50915.0	NM_175407	109205.0	Mm.153750	NM_175407	ENSMUSG00000038248	Sobp	2900009C16Rik|5330439J01Rik|JXC1|jc	sine oculis binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-109368297-4	chr11	109368159	109368359	+	818.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010303, intron 2 of 3)	intron (NM_010303, intron 2 of 3)	-4605.0	NR_038097	100036768.0	Mm.467767	NR_038097	ENSMUSG00000056687	Gm11696	-	predicted gene 11696	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-25636400-2	chr14	25636300	25636500	+	933.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 7 of 23)	intron (NM_183208, intron 7 of 23)	32887.0	NM_001309430	100188919.0	Mm.473810	NM_001309430		Gm45915	Israa	predicted gene, 45915	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-8420250-4	chr6	8420135	8420335	+	990.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302353, intron 4 of 4)	intron (NM_001302353, intron 4 of 4)	88926.0	NR_040452	320312.0	Mm.374890	NR_040452	ENSMUSG00000087305	A430035B10Rik	2810488G03Rik	RIKEN cDNA A430035B10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-21106473-4	chr19	21106387	21106587	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_126458)	TTS (NR_126458)	1777.0	NR_126458	75354.0	Mm.243873	NR_126458		4930554I06Rik	-	RIKEN cDNA 4930554I06 gene	ncRNA	3.41261088929307	4.0398276116309	2.74253049069066	2.0001264032465	3.03005474122334	3.96138418065704	2.29235625631247	2.01215443298401	-0.32773429663819	0.674548855876149	0.99440487726309
Merged-chr11-70805238-11	chr11	70805157	70805357	+	962.0575560000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045526, intron 1 of 4)	intron (NM_001045526, intron 1 of 4)	7304.0	NM_001045526	327957.0	Mm.164325	NM_001045526	ENSMUSG00000057135	Scimp	A430084P05Rik	SLP adaptor and CSK interacting membrane protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-61310567-4	chr14	61310467	61310667	+	950.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177337, intron 1 of 1)	intron (NM_177337, intron 1 of 1)	814.0	NM_177337	219144.0	Mm.206566	NM_177337	ENSMUSG00000043157	Arl11	ARLTS1|C730007L20Rik	ADP-ribosylation factor-like 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-120156062-4	chr6	120155956	120156156	+	994.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016718, intron 1 of 3)	intron (NM_016718, intron 1 of 3)	-37767.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-105162866-4	chr4	105162748	105162948	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080555, intron 1 of 5)	intron (NM_080555, intron 1 of 5)	5501.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-51149189-4	chr2	51149078	51149278	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028810)	promoter-TSS (NM_028810)	-67.0	NM_028810	74194.0	Mm.46497	NM_028810	ENSMUSG00000017144	Rnd3	2610017M01Rik|AI661404|Arhe|Rhoe	Rho family GTPase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-25452841-3	chr14	25452748	25452948	+	671.422241	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-6337.0	NM_001310666	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-46371930-2	chr2	46371828	46372028	+	615.166626	f0_balb.idr|f0_c57.idr	Intergenic	L1M3c|LINE|L1	675323.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-27944090-2	chr15	27943990	27944190	+	606.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081302, intron 1 of 56)	intron (NM_001081302, intron 1 of 56)	81758.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-39974922-3	chr15	39974843	39975043	+	786.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12294.0	NR_045719	105976.0	Mm.394885	NR_045719		AU022793	-	expressed sequence AU022793	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-95678430-3	chr10	95678348	95678548	+	627.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	-114302.0	NM_001358996	71207.0	Mm.24397	NM_027722	ENSMUSG00000020029	Nudt4	4933436C10Rik|DIPP-2|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P	nudix (nucleoside diphosphate linked moiety X)-type motif 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-57767834-2	chr6	57767734	57767934	+	734.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146168, intron 3 of 4)	(TC)n|Simple_repeat|Simple_repeat	57291.0	NM_146168	232023.0	Mm.24642	NM_146168	ENSMUSG00000037788	Vopp1	AW146242|Ecop	vesicular, overexpressed in cancer, prosurvival protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-59033576-1	chr4	59033476	59033676	+	839.5	f0_balb.idr	Intergenic	Intergenic	-1580.0	NM_025277	14700.0	Mm.41780	NM_025277	ENSMUSG00000038607	Gng10	AV006524	guanine nucleotide binding protein (G protein), gamma 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-34709167-4	chr13	34709052	34709252	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30490.0	NM_138746	108161.0	Mm.41991	NM_138746	ENSMUSG00000038246	Fam50b	D0H6S2654E|X5L|XAP-5-like	family with sequence similarity 50, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-144788859-2	chr6	144788759	144788959	+	617.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	115991.0	NR_040519	66760.0	Mm.233631	NR_040519	ENSMUSG00000085785	Sox5os3	4933425H06Rik	SRY (sex determining region Y)-box 5, opposite strand 3	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-26995750-2	chr10	26995629	26995829	+	750.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008481, intron 57 of 63)	intron (NM_008481, intron 57 of 63)	223217.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	1.11278904943574	2.01310679365615	1.93645593961149	0.939151526187481	1.29229416323238	1.91158561934072	2.14990176356288	0.942144317997722	0.212591976968083	0.865434974225726	0.998431161219273
Merged-chr16-31898496-3	chr16	31898396	31898596	+	922.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_013900, exon 16 of 16)	3' UTR (NM_013900, exon 16 of 16)	19686.0	NM_013900	30060.0	Mm.30988	NM_013900	ENSMUSG00000022780	Meltf	CD228|MTf|Mfi2	melanotransferrin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-55493497-2	chr12	55493397	55493597	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010907)	promoter-TSS (NM_010907)	-850.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-28170656-2	chr3	28170556	28170756	+	934.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-92558.0	NM_001163007	665113.0	Mm.126193	NM_026910	ENSMUSG00000027692	Tnik	1500031A17Rik|4831440I19Rik|AI451411|C530008O15Rik|C630040K21Rik	TRAF2 and NCK interacting kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-183982401-2	chr1	183982301	183982501	+	855.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51597.0	NM_028516	73363.0	Mm.50115	NM_028516	ENSMUSG00000044854	1700056E22Rik	-	RIKEN cDNA 1700056E22 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126500973-2	chr8	126500873	126501073	+	573.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25908.0	NM_001159907	212728.0	Mm.482479	NM_001159907	ENSMUSG00000090290	Tarbp1	Gm17296|Gm179	TAR RNA binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-39197166-4	chr16	39197055	39197255	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8205.0	NR_153800	102640746.0		NR_153800		Gm36742	-	predicted gene, 36742	ncRNA	4.38563282909496	5.5286458771949	4.54528663377584	4.99881427796102	3.79384586439855	4.51178986863889	4.47767968015415	2.57041766762019	-1.15212019235889	0.0172070780914334	0.160536954075441
Merged-chr6-113045692-4	chr6	113045590	113045790	+	789.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355266)	promoter-TSS (NM_001355266)	-612.0	NM_001355266	14911.0	Mm.781	NM_008188	ENSMUSG00000030264	Thumpd3	AW556087|Gt(ROSA)26asSor|Gtrosa26as	THUMP domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-108315334-4	chr8	108315238	108315438	+	754.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	269339.0	NR_077224	109215.0	Mm.65282	NR_077224	ENSMUSG00000110613	Lncbate1	3010033K07Rik|Lnc-BATE1	brown adipose tissue enriched long non-coding RNA 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-72261069-2	chr5	72260969	72261169	+	590.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_153389, exon 11 of 23)	exon (NM_153389, exon 11 of 23)	57726.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-84583580-4	chr6	84583481	84583681	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177713, intron 3 of 6)	intron (NM_001177713, intron 3 of 6)	10229.0	NM_175475	232174.0	Mm.255246	NM_175475	ENSMUSG00000063415	Cyp26b1	CP26|P450RAI-2	cytochrome P450, family 26, subfamily b, polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-42005775-4	chr19	42005647	42005847	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145500, intron 1 of 2)	L3|LINE|CR1	23984.0	NM_145500	226122.0	Mm.22948	NM_145500	ENSMUSG00000025171	Ubtd1	BC016129	ubiquitin domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-78520617-2	chr9	78520517	78520717	+	608.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR51A_Mm|LTR|ERVK?	-38893.0	NM_010106	13627.0	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-5422144-2	chr5	5422044	5422244	+	549.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-41893.0	NM_011074	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-103728147-4	chr3	103728078	103728278	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9823.0	NM_133859	99543.0	Mm.211535	NM_133859	ENSMUSG00000027848	Olfml3	2810002E22Rik|AI115209|AW550633|HNOEL-iso|ONT3|mONT3	olfactomedin-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-129495096-4	chr6	129494992	129495192	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138648, intron 4 of 7)	MT2A|LTR|ERVL	12073.0	NM_138648	108078.0	Mm.293626	NM_138648	ENSMUSG00000030162	Olr1	LOX-1|SR-EI|Scare1	oxidized low density lipoprotein (lectin-like) receptor 1	protein-coding	4.58911876755753	4.41334117958928	5.42431991602657	4.91728937750161	4.03069361633008	4.2426991211846	4.17217981931062	5.00593506214782	-0.583070683802505	0.149142428065782	0.60074222871528
Merged-chr10-50177753-2	chr10	50177653	50177853	+	658.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2B|LINE|L1	-388987.0	NM_001111268	14806.0	Mm.185993	NM_010349	ENSMUSG00000056073	Grik2	AW124492|C130030K03Rik|GluK2|Glur-6|Glur6|Glurbeta2	glutamate receptor, ionotropic, kainate 2 (beta 2)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70099221-2	chr14	70099121	70099321	+	563.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360404)	promoter-TSS (NM_001360404)	-872.0	NM_021328	57784.0	Mm.24186	NM_021328	ENSMUSG00000022089	Bin3	1700015F07Rik	bridging integrator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-34762342-4	chr5	34762257	34762457	+	978.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010414, intron 1 of 66)	intron (NM_010414, intron 1 of 66)	617.0	NM_010414	15194.0	Mm.209071	NM_010414	ENSMUSG00000029104	Htt	AI256365|C430023I11Rik|Hd|Hdh|IT15	huntingtin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-162574761-4	chr1	162574644	162574844	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356527, intron 2 of 7)	intron (NM_001356527, intron 2 of 7)	3916.0	NM_016796	53330.0	Mm.10699	NM_016796	ENSMUSG00000026696	Vamp4	D1Ertd147e|Vamp-4	vesicle-associated membrane protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-115097161-4	chr13	115097043	115097243	+	928.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033228, intron 1 of 28)	intron (NM_001033228, intron 1 of 28)	4821.0	NM_001033228	109700.0	Mm.317280	NM_001033228	ENSMUSG00000042284	Itga1	CD49A|E130012M19Rik|Vla1	integrin alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-84361924-4	chr12	84361814	84362014	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172581)	promoter-TSS (NM_172581)	-54.0	NM_172582	217707.0	Mm.280062	NM_172582	ENSMUSG00000021235	Coq6	5930427M12Rik|AW742344	coenzyme Q6 monooxygenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19932841-3	chr7	19932737	19932937	+	735.920654	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11694.0	NM_027514	52118.0	Mm.227506	NM_027514	ENSMUSG00000040511	Pvr	3830421F03Rik|CD155|D7Ertd458e|HVED|PVS|Taa1|Tage4|mE4|necl-5	poliovirus receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-34191281-2	chr19	34191181	34191381	+	580.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360716)	promoter-TSS (NM_001360716)	-948.0	NM_001360716	76630.0	Mm.130952	NM_029682	ENSMUSG00000024776	Stambpl1	1700095N21Rik|8230401J17Rik|ALMalpha|AMSH-FP	STAM binding protein like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-112792157-4	chr13	112792071	112792271	+	985.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8606.0	NM_008903	19012.0	Mm.291029	NM_008247	ENSMUSG00000021759	Plpp1	Hic53|Hpic53|LPP-1|LPP1|PAP-2a|PAP2-alpha|PAP2a|Ppap2a|mPAP	phospholipid phosphatase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-130709330-4	chr3	130709204	130709404	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_025509, exon 1 of 4)	exon (NM_025509, exon 1 of 4)	140.0	NM_025509	66357.0	Mm.300697	NM_025509	ENSMUSG00000041084	Ostc	2310008M10Rik|5730557H03Rik	oligosaccharyltransferase complex subunit (non-catalytic)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-40335002-2	chr9	40334902	40335102	+	546.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357617, intron 2 of 20)	intron (NM_001357617, intron 2 of 20)	1530.0	NR_040728	73558.0	Mm.398307	NR_040728		1700110K17Rik	-	RIKEN cDNA 1700110K17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-24159517-2	chr10	24159410	24159610	+	660.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016797, intron 2 of 9)	intron (NM_016797, intron 2 of 9)	10193.0	NM_016797	53331.0	Mm.248042	NM_016797	ENSMUSG00000019998	Stx7	AI315064|AI317144|AW107239|Syn7	syntaxin 7	protein-coding	0.0415381492838887	-0.294439493306605	-0.480778970052211	-0.483399555591563	-0.126560488263654	-0.47659577231623	-0.480027945132226	-0.482942482990194	-1.03051228518152	0.696074207792653	1
Merged-chr4-21848239-8	chr4	21848145	21848345	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_028384, exon 1 of 1)	non-coding (NR_028384, exon 1 of 1)	203.0	NR_028384	67735.0	Mm.391650	NR_028384		4930528A17Rik	-	RIKEN cDNA 4930528A17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-8811926-3	chr10	8811820	8812020	+	832.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 4 of 19)	L1MC4|LINE|L1	74150.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-14905092-2	chr17	14904992	14905192	+	657.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175173, intron 17 of 24)	Lx8b|LINE|L1	38032.0	NM_175173	71682.0	Mm.122698	NM_175173	ENSMUSG00000046991	Wdr27	0610012K18Rik	WD repeat domain 27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-22073322-4	chr3	22073245	22073445	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-3307.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-105989666-2	chr1	105989538	105989738	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001122676)	promoter-TSS (NM_001122676)	644.0	NR_151625	635504.0	Mm.359717	NR_151625		Gm7160	EG635504	predicted gene 7160	ncRNA	3.53011018721433	2.99889517577431	3.39564146214727	3.38096114827893	3.31076009748647	3.14209209453028	3.33637877540737	3.14748791252532	-0.179203284127518	0.75017200156549	0.998431161219273
Merged-chr17-29486760-2	chr17	29486692	29486892	+	997.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4253.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	0.273410834284926	1.18869195159608	0.793200666645128	0.284515892469892	0.440382524139173	0.301538571609546	0.293015124394179	0.985597502530892	-0.824318142567754	0.660825929080928	1
Merged-chr1-135111560-2	chr1	135111482	135111682	+	668.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_153383, intron 26 of 36)	B2_Mm1a|SINE|B2	-6306.0	NM_001033409	329252.0	Mm.279594	NM_001033409	ENSMUSG00000042793	Lgr6	A530037C04Rik|D830026M09	leucine-rich repeat-containing G protein-coupled receptor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-108825152-4	chr6	108825018	108825218	+	952.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3523.0	NM_138677	192193.0	Mm.21596	NM_138677	ENSMUSG00000030104	Edem1	A130059K23Rik|EDEM|mKIAA0212	ER degradation enhancer, mannosidase alpha-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126578617-2	chr8	126578517	126578717	+	781.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14819.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-46074090-4	chr17	46073984	46074184	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36920.0	NM_026768	68565.0	Mm.287443	NM_026768	ENSMUSG00000023967	Mrps18a	1110004O20Rik|C79712	mitochondrial ribosomal protein S18A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118646011-4	chr9	118645916	118646116	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 4 of 27)	intron (NM_133721, intron 4 of 27)	39307.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-83951429-2	chr12	83951329	83951529	+	875.5625	f1_balb.idr|f1_c57bl6.idr	exon (NM_023633, exon 1 of 1)	exon (NM_023633, exon 1 of 1)	821.0	NM_023633	71952.0	Mm.251483	NM_023633	ENSMUSG00000046791	Riox1	2410016O06Rik|MAPJD|NO66	ribosomal oxygenase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-105692424-2	chr5	105692324	105692524	+	601.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7545.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-145859112-1	chr2	145859012	145859212	+	542.0	f1_c57bl6.idr	intron (NM_028724, intron 8 of 12)	intron (NM_028724, intron 8 of 12)	-44129.0	NM_026425	67877.0	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	1.43120433160587	1.30076255932147	0.962909953553463	1.3288267565083	1.26635610429263	1.16576023538225	0.779240466234789	0.945859587038598	-0.971532044107678	0.468236312996219	0.924409990887115
Merged-chr15-13391552-4	chr15	13391437	13391637	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-217862.0	NM_007666	12563.0	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-130969244-2	chr7	130969144	130969344	+	890.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_019564, intron 3 of 8)	intron (NM_019564, intron 3 of 8)	33041.0	NM_019564	56213.0	Mm.30156	NM_019564	ENSMUSG00000006205	Htra1	AI429470|HTRA|L56|Prss11|RSPP11	HtrA serine peptidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-69218597-4	chr10	69218479	69218679	+	796.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252638, intron 2 of 11)	intron (NM_001252638, intron 2 of 11)	5385.0	NM_001252638	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78624457-2	chr15	78624357	78624557	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27410.0	NM_028195	72318.0	Mm.32911	NM_028195	ENSMUSG00000018008	Cyth4	2510004M07Rik|5830469K17Rik|AI467541|Pscd4|mFLJ00017	cytohesin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-84372629-4	chr4	84372520	84372720	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172870, intron 4 of 5)	PB1D7|SINE|Alu	302466.0	NM_172870	242509.0	Mm.190774	NM_172870	ENSMUSG00000028487	Bnc2	5031434M05Rik|8430420F16Rik	basonuclin 2	protein-coding	2.83640144754853	3.17813532248541	2.32203250580238	3.37064919511938	3.02321089207626	2.74019388123653	2.50421067445256	3.51074662035081	0.0388619399297683	0.954521823840282	0.998431161219273
Merged-chr3-88142327-4	chr3	88142245	88142445	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133665)	promoter-TSS (NM_133665)	-27.0	NM_001310593	17261.0	Mm.28184	NM_133665	ENSMUSG00000001419	Mef2d	C80750	myocyte enhancer factor 2D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-117852634-4	chr2	117852535	117852735	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040631, intron 2 of 5)	intron (NR_040631, intron 2 of 5)	30707.0	NR_040631	73938.0	Mm.399107	NR_040631	ENSMUSG00000086221	4930412B13Rik	-	RIKEN cDNA 4930412B13 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43741996-2	chr4	43741902	43742102	+	882.625	f0_balb.idr|f1_balb.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-9857.0	NR_040667	319973.0	Mm.233955	NR_040667		A630077J23Rik	-	RIKEN cDNA A630077J23 gene	ncRNA	2.02960215337026	1.29212287691302	1.25761656546762	2.46826228079774	2.52209574811622	2.75186365607817	1.74965768471769	2.87274790449618	1.51149046479848	0.128699633808572	0.56123268952093
Merged-chr8-110847501-1	chr8	110847401	110847601	+	765.0	f0_balb.idr	promoter-TSS (NM_133953)	promoter-TSS (NM_133953)	477.0	NM_133973	102339.0	Mm.272930	NM_133973	ENSMUSG00000031753	Cog4	AW554810|D8Ertd515e	component of oligomeric golgi complex 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-25280378-2	chr4	25280278	25280478	+	769.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026194, intron 2 of 18)	intron (NM_026194, intron 2 of 18)	1443.0	NM_026194	67490.0	Mm.226295	NM_026194	ENSMUSG00000040359	Ufl1	1810074P20Rik|AI429228|Kiaa0776|Maxer|Rcad|mKIAA0776	UFM1 specific ligase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-110476868-2	chr11	110476768	110476968	+	766.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356352, intron 1 of 11)	MTE2b|LTR|ERVL-MaLR	-1647.0	NM_001356347	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-3122998-3	chr16	3122888	3123088	+	796.944458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-469410.0	NM_146860	258859.0	Mm.377723	NM_146860	ENSMUSG00000051003	Olfr161	MOR131-1|OR912-47M6	olfactory receptor 161	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117828420-4	chr11	117828322	117828522	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027827, intron 2 of 10)	URR1B|DNA|hAT-Charlie	-2408.0	NM_009387	21877.0	Mm.2661	NM_009387	ENSMUSG00000025574	Tk1	D530002A18Rik|Tk-1|Tk1a|Tk1b	thymidine kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-34770194-4	chr2	34770025	34770225	+	858.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur2|SINE|Alu	-1965.0	NM_001163434	14828.0	Mm.330160	NM_022310	ENSMUSG00000026864	Hspa5	AL022860|AU019543|Bip|D2Wsu141e|D2Wsu17e|Grp78|Hsce70|SEZ-7|Sez7|baffled|mBiP	heat shock protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-64026735-2	chr15	64026635	64026835	+	890.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360037, intron 1 of 11)	intron (NM_001360037, intron 1 of 11)	-28669.0	NM_001360035	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-4867751-4	chr1	4867643	4867843	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159750, intron 2 of 9)	RMER6B|LTR|ERVK	9415.0	NM_001159751	21399.0	Mm.207263	NM_011541	ENSMUSG00000033813	Tcea1	S-II	transcription elongation factor A (SII) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-4214551-4	chr8	4214439	4214639	+	980.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_207203, exon 6 of 7)	exon (NM_207203, exon 6 of 7)	2773.0	NM_207203	73072.0	Mm.477379	NM_207203	ENSMUSG00000064125	Prr36	-	proline rich 36	protein-coding	1.87784846700343	3.34880620944236	2.66055292538579	2.66692723064654	2.6941969936736	1.223568032588	1.18360581957548	1.14761779250863	-2.02070175542098	0.058093722335188	0.356207967075077
Merged-chr6-136656443-4	chr6	136656345	136656545	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025806, intron 1 of 10)	intron (NM_025806, intron 1 of 10)	5448.0	NM_025806	66857.0	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	3.89579502764889	4.0027502854389	4.23644187018991	4.55805630438551	5.68261325445282	5.24248633468755	5.95845535514001	5.01985114102859	1.59687550556061	8.47908827856154e-06	0.000399471601437885
Merged-chr9-69989908-4	chr9	69989800	69990000	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001008238, intron 1 of 9)	CpG	434.0	NM_001008238	12175.0	Mm.159777	NM_016787	ENSMUSG00000011958	Bnip2	5730523P12Rik|BNIP2beta|Nip21	BCL2/adenovirus E1B interacting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-69670737-3	chr2	69670630	69670830	+	872.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081087, exon 1 of 6)	exon (NM_001081087, exon 1 of 6)	610.0	NM_001081087	228003.0	Mm.178784	NM_001081087	ENSMUSG00000075307	Klhl41	Gm112|Kbtbd10|SARCOSIN	kelch-like 41	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-111687234-9	chr13	111687123	111687323	+	898.009277	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172593, intron 1 of 12)	CpG	1045.0	NM_172593	218613.0	Mm.31012	NM_172593	ENSMUSG00000032727	Mier3	5730509D14|AU015422|D130064H19Rik	MIER family member 3	protein-coding	1.31639971563476	1.80642354056902	2.26272944941134	0.969424640655314	1.32716408376153	1.82119083733742	2.28247241479842	0.972596934714163	0.0405084951278994	0.973528139772223	0.998431161219273
Merged-chr13-83730712-3	chr13	83730695	83730895	+	667.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152244, intron 2 of 4)	CpG	-1698.0	NR_152246	320203.0	Mm.245636	NM_177100	ENSMUSG00000050334	C130071C03Rik	2810449C10Rik|ECONEXIN|EyeLinc1|Visc-1	RIKEN cDNA C130071C03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83542673-2	chr11	83542573	83542773	+	625.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12155.0	NM_013653	20304.0	Mm.284248	NM_013653	ENSMUSG00000035042	Ccl5	MuRantes|RANTES|SISd|Scya5|TCP228	chemokine (C-C motif) ligand 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-24919900-4	chr16	24919801	24920001	+	963.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 10 of 12)	intron (NM_178665, intron 10 of 12)	-139738.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-73113466-4	chr9	73113341	73113541	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198609)	promoter-TSS (NM_198609)	-28.0	NM_198609	225215.0	Mm.379366	NM_198609	ENSMUSG00000032215	Rsl24d1	2410159K22Rik	ribosomal L24 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27569990-3	chr17	27569912	27570112	+	650.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4285.0	NM_001002895	106672.0	Mm.61488	NM_001002895	ENSMUSG00000062753	AI413582	AI854251|Smim29	expressed sequence AI413582	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-53038694-4	chr19	53038589	53038789	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133216)	promoter-TSS (NM_133216)	-35.0	NM_133216	170750.0	Mm.99776	NM_133216	ENSMUSG00000025027	Xpnpep1	D230045I08Rik|sAMP	X-prolyl aminopeptidase (aminopeptidase P) 1, soluble	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-61994465-4	chr12	61994356	61994556	+	967.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPLTR3-int|LTR|ERVK	471289.0	NM_001310586	238205.0	Mm.28802	NM_178714	ENSMUSG00000035653	Lrfn5	AI427653|AI604817|C130061B21|mKIAA4208	leucine rich repeat and fibronectin type III domain containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-109424601-4	chr11	109424484	109424684	+	658.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC4a|LINE|L1	-1362.0	NM_025275	13929.0	Mm.211850	NM_025275	ENSMUSG00000020610	Amz2	AA408420|ESTM12|X83328	archaelysin family metallopeptidase 2	protein-coding	1.04923279936232	0.380084312488329	0.565026136668889	0.942674075385985	0.355240598033626	0.382014587711676	0.373381236499592	1.23291359177458	-0.507436783729441	0.782599518176697	1
Merged-chr2-152832093-2	chr2	152831993	152832193	+	700.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009743)	promoter-TSS (NM_009743)	-365.0	NM_009743	12048.0	Mm.238213	NM_009743	ENSMUSG00000007659	Bcl2l1	Bcl(X)L|Bcl-XL|Bcl2l|BclX|bcl-x|bcl2-L-1	BCL2-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-114401229-7	chr9	114401124	114401324	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009752, exon 1 of 16)	exon (NM_009752, exon 1 of 16)	129.0	NM_001200002	100504715.0	Mm.290516	NM_001200002	ENSMUSG00000079260	Tmppe	-	transmembrane protein with metallophosphoesterase domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96414790-4	chr3	96414688	96414888	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_001579)	promoter-TSS (NR_001579)	45.0	NR_001579	21748.0		NR_001579	ENSMUSG00000064796	Terc	mTER|mTR	telomerase RNA component	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-79534371-2	chr11	79534271	79534471	+	616.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010897, intron 36 of 57)	MLTR11B|LTR|ERVK	-3762.0	NM_010161	14017.0	Mm.439665	NM_010161	ENSMUSG00000078771	Evi2a	AW491894|Evi-2|Evi2	ecotropic viral integration site 2a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-103985416-3	chr11	103985300	103985500	+	716.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001304574)	TTS (NM_001304574)	18529.0	NM_007477	11841.0	Mm.5061	NM_007477	ENSMUSG00000062421	Arf2	-	ADP-ribosylation factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-36931835-3	chr9	36931623	36931823	+	959.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029838, intron 6 of 12)	intron (NM_001029838, intron 6 of 12)	98149.0	NM_001357611	235180.0	Mm.5264	NM_183171	ENSMUSG00000032118	Fez1	UNC-76|UNC76	fasciculation and elongation protein zeta 1 (zygin I)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-25988089-2	chr15	25987989	25988189	+	675.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144523, intron 3 of 5)	intron (NM_144523, intron 3 of 5)	3723.0	NM_144523	52521.0	Mm.29145	NM_144523	ENSMUSG00000052253	Zfp622	1110033B05Rik|D15Ertd806e|ZPR9|Znf622	zinc finger protein 622	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150474984-4	chr4	150474866	150475066	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 6 of 22)	intron (NM_001085492, intron 6 of 22)	177208.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-77874870-4	chr14	77874725	77874925	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025384)	promoter-TSS (NM_025384)	92.0	NM_025384	66148.0	Mm.248046	NM_025384	ENSMUSG00000022013	Dnajc15	1110003P16Rik|Dnajd1	DnaJ heat shock protein family (Hsp40) member C15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3325116-4	chr19	3325019	3325219	+	892.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013495, intron 1 of 18)	intron (NM_013495, intron 1 of 18)	1818.0	NM_013495	12894.0	Mm.18522	NM_013495	ENSMUSG00000024900	Cpt1a	C730027G07|CPTI|Cpt1	carnitine palmitoyltransferase 1a, liver	protein-coding	2.97525547041769	1.49783848069842	2.84265466438127	2.34473925968575	2.79968994068593	3.05176664372016	2.13385225909816	2.22191369965435	0.135459574465991	0.872928646238198	0.998431161219273
Merged-chr14-78790599-3	chr14	78790498	78790698	+	958.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57869.0	NM_001081336	380921.0	Mm.89591	NM_001081336	ENSMUSG00000034731	Dgkh	5930402B05Rik|D130015C16|DGK	diacylglycerol kinase, eta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-63730618-4	chr1	63730528	63730728	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172422)	promoter-TSS (NM_172422)	3.0	NM_172422	75619.0	Mm.30965	NM_172422	ENSMUSG00000025962	Fastkd2	2810421I24Rik	FAST kinase domains 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-3675102-4	chr7	3674973	3675173	+	965.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_181820, exon 4 of 15)	exon (NM_181820, exon 4 of 15)	2480.0	NM_181820	353499.0	Mm.360398	NM_181820	ENSMUSG00000019734	Tmc4	-	transmembrane channel-like gene family 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-154928200-4	chr4	154928147	154928347	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178931)	promoter-TSS (NM_178931)	-170.0	NM_178931	230979.0	Mm.215147	NM_178931	ENSMUSG00000042333	Tnfrsf14	Atar|HveA|Hvem|Tnfrs14	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	protein-coding	2.08581005953819	2.7711539549032	1.17837781661251	2.74346907564227	1.5470695336884	2.79279724319882	1.87082319053377	1.1553208191152	-0.744788245935355	0.487563161226627	0.932902141745994
Merged-chr8-116629693-2	chr8	116629593	116629793	+	737.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029441, intron 1 of 6)	intron (NM_029441, intron 1 of 6)	103298.0	NM_029441	75796.0	Mm.159575	NM_029441	ENSMUSG00000031758	Cdyl2	1700029M19Rik|4930453I21Rik|Gm20194	chromodomain protein, Y chromosome-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-90890240-2	chr5	90890140	90890340	+	610.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1005.0	NM_008176	14825.0	Mm.21013	NM_008176	ENSMUSG00000029380	Cxcl1	Fsp|Gro1|KC|Mgsa|N51|Scyb1|gro	chemokine (C-X-C motif) ligand 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26510208-2	chr17	26510108	26510308	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1736.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-64604254-2	chr17	64604154	64604354	+	885.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008549, intron 1 of 21)	intron (NM_008549, intron 1 of 21)	2605.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-67266875-4	chr6	67266735	67266935	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025814)	promoter-TSS (NM_025814)	-144.0	NM_001113566	66870.0	Mm.240490	NM_025814	ENSMUSG00000036371	Serbp1	1200009K13Rik|9330147J08Rik|AL022786|Pairbp1	serpine1 mRNA binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-38025555-3	chr7	38025421	38025621	+	828.694458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER20B|LTR|ERVK	-5969.0	NM_011274	19777.0	Mm.387220	NM_011274	ENSMUSG00000030421	Uri1	C80913|NNX3|Rmp	URI1, prefoldin-like chaperone	protein-coding	2.36997433295556	2.90233209975344	1.97595867250306	3.29559717455951	4.76540953538271	4.80168317647651	3.84534197729546	4.45551750266734	2.60293687002779	3.1456312238727e-06	0.000172478081035476
Merged-chr2-68380806-2	chr2	68380706	68380906	+	768.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016866, intron 5 of 17)	intron (NM_016866, intron 5 of 17)	91175.0	NM_016866	53416.0	Mm.198414	NM_016866	ENSMUSG00000027030	Stk39	AW227544|AW556857|DCHT|RF005|Rnl5|SPAK	serine/threonine kinase 39	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-42929207-4	chr6	42929118	42929318	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13D3A1|LTR|ERVK	1985.0	NM_146295	258292.0	Mm.222992	NM_146295	ENSMUSG00000073111	Olfr446	MOR261-12	olfactory receptor 446	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99771623-1	chr15	99771523	99771723	+	588.0	f0_balb.idr	intron (NM_028015, intron 1 of 9)	intron (NM_028015, intron 1 of 9)	892.0	NM_028015	71949.0	Mm.390821	NM_028015	ENSMUSG00000023021	Cers5	2310081H14Rik|AU045339|AW544927|Lass5|Trh4	ceramide synthase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78305694-4	chr15	78305604	78305804	+	997.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007781)	promoter-TSS (NM_007781)	17.0	NM_007781	12984.0	Mm.1940	NM_007781	ENSMUSG00000071714	Csf2rb2	AIC2A|BetaIl3|Bil3|Csfgmrb|Il3r|Il3rb|Il3rb2	colony stimulating factor 2 receptor, beta 2, low-affinity (granulocyte-macrophage)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-58522545-2	chr13	58522425	58522625	+	738.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	88352.0	NM_022317	114304.0	Mm.18188	NM_022317	ENSMUSG00000021553	Slc28a3	Cnt3	solute carrier family 28 (sodium-coupled nucleoside transporter), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32536330-2	chr2	32536230	32536430	+	709.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153560, intron 1 of 10)	intron (NM_153560, intron 1 of 10)	971.0	NM_153560	98952.0	Mm.4065	NM_153560	ENSMUSG00000039157	Fam102a	AI426465|C230093N12Rik|Eeig1	family with sequence similarity 102, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-96690505-4	chr10	96690397	96690597	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	73496.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78876363-4	chr15	78876255	78876455	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145929)	promoter-TSS (NM_145929)	-835.0	NM_145929	106039.0	Mm.251331	NM_145929	ENSMUSG00000033128	Gga1	4930406E12Rik|AU016030|AW209092	golgi associated, gamma adaptin ear containing, ARF binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-125214753-2	chr2	125214668	125214868	+	556.0	f0_balb.idr|f1_balb.idr	intron (NM_001079690, intron 22 of 27)	intron (NM_001079690, intron 22 of 27)	-32480.0	NM_001159646	110074.0	Mm.282499	NM_023595	ENSMUSG00000027203	Dut	5031412I06Rik|5133400F09Rik|D2Bwg0749e|Dutp|dUTPase	deoxyuridine triphosphatase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167930012-2	chr2	167929912	167930112	+	890.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2315.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-95507589-4	chr9	95507504	95507704	+	998.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357977, intron 1 of 25)	intron (NM_001357977, intron 1 of 25)	4392.0	NM_001357975	67958.0	Mm.292742	NM_026476	ENSMUSG00000032407	U2surp	2610101N10Rik|AU023006|Sr140	U2 snRNP-associated SURP domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-22445494-2	chr16	22445394	22445594	+	881.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5924.0	NM_023794	104156.0	Mm.155708	NM_023794	ENSMUSG00000013089	Etv5	1110005E01Rik|8430401F14Rik|ERM	ets variant 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-73548212-2	chr14	73548112	73548312	+	698.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172527)	promoter-TSS (NM_172527)	30.0	NM_172527	214254.0	Mm.386852	NM_172527	ENSMUSG00000033405	Nudt15	6530403O17|A730068G11Rik|MTH2	nudix (nucleoside diphosphate linked moiety X)-type motif 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-23543491-4	chr13	23543333	23543533	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013548)	promoter-TSS (NM_013548)	11.0	NM_178197	319182.0	Mm.352273	NM_178197	ENSMUSG00000114456	Hist1h2bh	H2b-221	histone cluster 1, H2bh	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3832725-2	chr12	3832625	3832825	+	899.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271753, intron 1 of 22)	intron (NM_001271753, intron 1 of 22)	25565.0	NM_001271753	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-139494861-2	chr4	139494761	139494961	+	712.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35687.0	NM_183148	212632.0	Mm.30464	NM_183148	ENSMUSG00000041025	Iffo2	C79267	intermediate filament family orphan 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-52279490-4	chr14	52279373	52279573	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172601)	promoter-TSS (NM_172601)	-78.0	NM_172601	76338.0	Mm.32870	NM_172601	ENSMUSG00000022159	Rab2b	1500012D09Rik|4930528G15Rik|A230002G14|D530043M21Rik	RAB2B, member RAS oncogene family	protein-coding	6.84410444242146	6.6702573290227	6.60077583250796	7.16993000879858	6.754588507266	6.15714048801823	6.55258675514594	6.77543889122235	-0.270865232612035	0.191189076237575	0.669546561020494
Merged-chr10-130322802-3	chr10	130322695	130322895	+	838.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183264)	promoter-TSS (NM_183264)	-57.0	NM_183264	67596.0	Mm.131264	NM_183264	ENSMUSG00000034833	Tespa1	5830405N20Rik|A430001F24Rik|AI450549	thymocyte expressed, positive selection associated 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-138989389-2	chr3	138989289	138989489	+	594.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286759, intron 4 of 14)	Lx7|LINE|L1	85812.0	NM_145544	229877.0	Mm.28893	NM_145544	ENSMUSG00000028149	Rap1gds1	BC011279|GDS1	RAP1, GTP-GDP dissociation stimulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180409697-2	chr1	180409597	180409797	+	927.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081175, intron 2 of 7)	intron (NM_001081175, intron 2 of 7)	73807.0	NM_001081227	381310.0	Mm.44791	NM_001081227	ENSMUSG00000053963	Stum	6330403A02Rik|Gm10001|R75555	mechanosensory transduction mediator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-22511451-4	chr16	22511348	22511548	+	933.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_130988)	promoter-TSS (NR_130988)	-32.0	NR_130988	78082.0	Mm.243927	NR_130988	ENSMUSG00000089874	9230117E06Rik	-	RIKEN cDNA 9230117E06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-19184518-2	chr10	19184418	19184618	+	667.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_038022, intron 1 of 1)	RMER13B|LTR|ERVK	17280.0	NR_038022	100504265.0	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-94483517-3	chr3	94483406	94483606	+	874.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357787)	promoter-TSS (NM_001357787)	784.0	NR_110353	78784.0	Mm.44292	NM_172434	ENSMUSG00000028137	Celf3	4930415M08Rik|BRUNOL1|CAGH4|ERDA4|ETR-1|Tnrc4	CUGBP, Elav-like family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-66199156-2	chr14	66199056	66199256	+	693.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 2 of 30)	intron (NM_001162366, intron 2 of 30)	14668.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-75122397-2	chr1	75122297	75122497	+	661.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11493.0	NM_194333	22626.0	Mm.68157	NM_194333	ENSMUSG00000026205	Slc23a3	SVCT3|Yspl1	solute carrier family 23 (nucleobase transporters), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-33028945-2	chr4	33028845	33029045	+	1000.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_036602, exon 2 of 2)	non-coding (NR_036602, exon 2 of 2)	2378.0	NR_036602	100504166.0	Mm.426309	NR_036602	ENSMUSG00000085037	4933421O10Rik	-	RIKEN cDNA 4933421O10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101105584-4	chr15	101105488	101105688	+	889.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10167.0	NM_144790	208258.0	Mm.152952	NM_144790	ENSMUSG00000047034	Ankrd33	A930021G21Rik|Panky|Panky-a	ankyrin repeat domain 33	protein-coding	1.68023977750595	1.90664272016065	0.985888619339379	2.22829783130364	1.69536818389189	1.01100561532807	0.990478310563788	1.99399068244401	-0.808489635044635	0.5269636018804	0.948839578239191
Merged-chr5-86917531-2	chr5	86917431	86917631	+	758.75	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_152811, exon 6 of 6)	3' UTR (NM_152811, exon 6 of 6)	8972.0	NM_152811	71773.0	Mm.26741	NM_152811	ENSMUSG00000035836	Ugt2b1	1300012D20Rik	UDP glucuronosyltransferase 2 family, polypeptide B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83165806-4	chr6	83165708	83165908	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001198866)	promoter-TSS (NM_001198866)	-116.0	NM_001198866	13191.0	Mm.6919	NM_007835	ENSMUSG00000031865	Dctn1	AL022633|DAP-150|DP-150|Glued|p150|p150-glued|p150<glued>	dynactin 1	protein-coding	3.12002608946632	3.48512345537525	3.21235630316643	2.72511293306634	3.51066707310158	2.64019588578497	2.82622829546779	2.85295845565141	-0.249935395657599	0.695653814531185	0.997923870727665
Merged-chr18-38251254-2	chr18	38251154	38251354	+	610.166687	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027904)	promoter-TSS (NR_027904)	-689.0	NR_027904	73516.0	Mm.48776	NR_015475	ENSMUSG00000097080	1700086O06Rik	-	RIKEN cDNA 1700086O06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-11659328-3	chr19	11659223	11659423	+	844.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037634, intron 1 of 3)	intron (NM_001037634, intron 1 of 3)	1236.0	NM_001037634	225922.0	Mm.26881	NM_001037634	ENSMUSG00000055895	Oosp2	Gm99|Plac1l|Tmem122	oocyte secreted protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-25163978-2	chr5	25163878	25164078	+	619.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17502.0	NM_026449	67909.0	Mm.141471	NM_026449	ENSMUSG00000028938	Galntl5	1700021B12Rik|Galnt15	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131188730-4	chr1	131188640	131188840	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018750, intron 2 of 5)	MIR3|SINE|MIR	11445.0	NM_001311094	54354.0	Mm.248291	NM_018750	ENSMUSG00000026430	Rassf5	1300019G20Rik|Maxp1|Nore1|Nore1A|Nore1B|Rapl	Ras association (RalGDS/AF-6) domain family member 5	protein-coding	2.13723478273582	2.65109661335336	1.36193496558078	2.58397287499905	3.02734928788118	1.40885204487049	2.77581581710346	2.59763507001535	0.640442782233005	0.499067181096883	0.937388734723802
Merged-chr16-91013639-2	chr16	91013539	91013739	+	741.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_026110)	TTS (NM_026110)	-2331.0	NM_001164483	104015.0	Mm.187079	NM_001045515	ENSMUSG00000022973	Synj1	A930006D20Rik|AA675315|mKIAA0910	synaptojanin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-86594119-2	chr11	86594019	86594219	+	690.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356531, intron 10 of 11)	intron (NM_001356531, intron 10 of 11)	-9961.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-80151724-2	chr11	80151624	80151824	+	557.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2438.0	NM_172133	216991.0	Mm.341520	NM_172133	ENSMUSG00000020709	Adap2	Centa2	ArfGAP with dual PH domains 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-27863076-2	chr3	27862976	27863176	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33292.0	NM_001164437	208613.0	Mm.59189	NM_001164437	ENSMUSG00000043164	Tmem212	E030011K20Rik|Gm564	transmembrane protein 212	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5806946-4	chr19	5806854	5807054	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4282.0	NR_002847	72289.0	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-27085682-3	chr8	27085557	27085757	+	758.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_054044)	promoter-TSS (NM_054044)	-184.0	NM_054044	78560.0	Mm.87046	NM_054044	ENSMUSG00000031486	Adgra2	8430414O08Rik|9530074E10Rik|Gpr124|Tem5|mKIAA1531	adhesion G protein-coupled receptor A2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-132211228-2	chr1	132211128	132211328	+	549.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033250, intron 1 of 3)	B3|SINE|B2	13140.0	NR_029777	723818.0		NR_029777	ENSMUSG00000065435	Mir135b	Mirn135b|mir-135b	microRNA 135b	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-25197691-2	chr2	25197591	25197791	+	908.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146115)	promoter-TSS (NM_146115)	-878.0	NM_146115	227612.0	Mm.119747	NM_146115	ENSMUSG00000059555	Tor4a	A830007P12Rik	torsin family 4, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-44104309-4	chr14	44104211	44104411	+	995.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001012766)	TTS (NM_001012766)	1424.0	NM_017388	53876.0	Mm.327386	NM_017388		Ear3	Rnase3|mR3	eosinophil-associated, ribonuclease A family, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-73041777-3	chr14	73041694	73041894	+	818.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162412, intron 2 of 4)	intron (NM_001162412, intron 2 of 4)	7320.0	NM_133720	70086.0	Mm.158324	NM_133720	ENSMUSG00000033470	Cysltr2	2300001H05Rik|CYSLT2R|Cltr2|Cyslt2	cysteinyl leukotriene receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-52191562-2	chr6	52191462	52191662	+	763.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_008265, exon 1 of 2)	exon (NM_008265, exon 1 of 2)	141.0	NM_008265	15401.0	Mm.439647	NM_008265	ENSMUSG00000000942	Hoxa4	AV206827|Hox-1.4	homeobox A4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-10359604-4	chr17	10359502	10359702	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35000.0	NR_045461	76634.0	Mm.491052	NR_045461	ENSMUSG00000099384	1700110C19Rik	-	RIKEN cDNA 1700110C19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-64400498-2	chr13	64400527	64400727	+	837.400024	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30107.0	NM_009984	13039.0	Mm.930	NM_009984	ENSMUSG00000021477	Ctsl	1190035F06Rik|CatL|Ctsl1|MEP|fs|nkt	cathepsin L	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127470973-4	chr7	127470884	127471084	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145589)	promoter-TSS (NM_145589)	-630.0	NM_145589	233895.0	Mm.44183	NM_145589	ENSMUSG00000030822	Prr14	BC006909	proline rich 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-54369399-4	chr12	54369299	54369499	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21919.0	NR_033689	665239.0	Mm.26856	NR_033689		Gm7550	EG665239|Gm666	predicted gene 7550	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-21425925-4	chr11	21425843	21426043	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54676.0	NM_001290634	216558.0	Mm.28877	NM_139297	ENSMUSG00000001891	Ugp2	UDPGP|UGPase	UDP-glucose pyrophosphorylase 2	protein-coding	3.29466349997682	3.34151246235993	2.89919964733343	3.72581406812783	3.45436761662997	3.14969918753913	2.63874024489009	3.95599445988544	0.0732966868948297	0.90283164542151	0.998431161219273
Merged-chr14-56375944-4	chr14	56375843	56376043	+	771.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138652, intron 10 of 22)	intron (NM_138652, intron 10 of 22)	10875.0	NM_138652	192113.0	Mm.273271	NM_138652	ENSMUSG00000022229	Atp12a	Atp1al1|HKalpha2|cHKA	ATPase, H+/K+ transporting, nongastric, alpha polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-75788620-6	chr2	75788475	75788675	+	854.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43602.0	NM_172666	228061.0	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-180051205-4	chr2	180051108	180051308	+	849.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178750, intron 1 of 10)	intron (NM_178750, intron 1 of 10)	8725.0	NM_178750	269397.0	Mm.63068	NM_178750	ENSMUSG00000039086	Ss18l1	A230053O16Rik|CREST	SS18, nBAF chromatin remodeling complex subunit like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-81202178-4	chr16	81202077	81202277	+	798.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113208, intron 1 of 17)	intron (NM_001113208, intron 1 of 17)	1480.0	NM_010954	17968.0	Mm.433941	NM_010954	ENSMUSG00000022762	Ncam2	Ncam-2|Ocam|RNCAM	neural cell adhesion molecule 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-94174326-2	chr13	94174226	94174426	+	772.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_172589, exon 3 of 4)	exon (NM_172589, exon 3 of 4)	110955.0	NM_029153	107767.0	Mm.201455	NM_029153	ENSMUSG00000021687	Scamp1	4930505M11Rik|AI415563|AW122395	secretory carrier membrane protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-43701115-3	chr10	43701000	43701200	+	934.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT2F|LTR|ERVL	-45058.0	NR_040581	69443.0	Mm.484042	NR_040581	ENSMUSG00000111422	1700027J07Rik	-	RIKEN cDNA 1700027J07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-102516974-3	chr14	102516884	102517084	+	829.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	465648.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56203200-1	chr17	56203100	56203300	+	542.0	f1_balb.idr	intron (NM_001360284, intron 8 of 20)	intron (NM_001360284, intron 8 of 20)	15285.0	NM_001360284	224897.0	Mm.205535	NM_172624	ENSMUSG00000001229	Dpp9	6430584G11Rik|A330078I11|DPP IX|DPRP2	dipeptidylpeptidase 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-43321057-3	chr1	43320918	43321118	+	862.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-124257.0	NM_001289533	14200.0	Mm.6799	NM_010212	ENSMUSG00000008136	Fhl2	FHL-2|SLIM-3|SLIM3	four and a half LIM domains 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-78988408-3	chr2	78988315	78988515	+	666.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	118737.0	NR_151457	22193.0	Mm.1485	NM_009454	ENSMUSG00000027011	Ube2e3	Ubce4|ubcM2	ubiquitin-conjugating enzyme E2E 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-82613682-2	chr11	82613582	82613782	+	989.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1G1|LTR|ERVL-MaLR	-19671.0	NR_033582	791422.0	Mm.341562	NR_033582	ENSMUSG00000069796	Gm11426	-	predicted gene 11426	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-71020011-4	chr2	71019910	71020110	+	943.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145524, intron 1 of 9)	intron (NM_145524, intron 1 of 9)	-1636.0	NM_001110512	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-68130033-7	chr10	68129994	68130194	+	949.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023598, intron 5 of 9)	intron (NM_023598, intron 5 of 9)	148632.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	0.414698862595251	0.777048914991699	0.72706463350731	0.156117111861231	0.149527863346442	0.52769636463564	0.162111847773957	0.156931602094813	-2.28973853656008	0.263151128516924	1
Merged-chr12-55474034-4	chr12	55473941	55474141	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18606.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-48973071-2	chr7	48972971	48973171	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111016, intron 2 of 38)	intron (NM_001111016, intron 2 of 38)	13998.0	NM_001111016	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-45651687-3	chr19	45651583	45651783	+	839.361084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013907, intron 1 of 8)	intron (NM_013907, intron 1 of 8)	8510.0	NM_013907	30838.0	Mm.254739	NM_013907	ENSMUSG00000040913	Fbxw4	Dac|Fbw4|SHFM3|SHSF3|dactylin|dactylyn	F-box and WD-40 domain protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-37880278-3	chr13	37880180	37880380	+	898.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039188, intron 1 of 9)	intron (NM_001039188, intron 1 of 9)	-8154.0	NR_033218	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-121821749-2	chr5	121821649	121821849	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001306126, intron 3 of 8)	intron (NM_001306126, intron 3 of 8)	-2476.0	NR_105998	102465624.0		NR_105998	ENSMUSG00000099063	Mir7031	Gm27859|mmu-mir-7031	microRNA 7031	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-92986085-3	chr13	92985974	92986174	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-87230.0	NR_036451	100502942.0	Mm.441946	NM_177623	ENSMUSG00000114382	Gm4814	C920025J10|EG218444	predicted gene 4814	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-64087839-2	chr15	64087739	64087939	+	677.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001276462, exon 28 of 28)	3' UTR (NM_001276462, exon 28 of 28)	-27391.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-57407902-1	chr14	57407802	57408002	+	1000.0	f0_c57.idr	Intergenic	Intergenic	-9419.0	NM_030004	68631.0	Mm.25539	NM_030004	ENSMUSG00000021947	Cryl1	1110025H08Rik|A230106J09Rik|C85932|gul3dh	crystallin, lambda 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-18073536-2	chr16	18073436	18073636	+	631.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011172, intron 12 of 13)	intron (NM_011172, intron 12 of 13)	7133.0	NM_001289813	13353.0	Mm.27155	NM_010047	ENSMUSG00000003531	Dgcr6	-	DiGeorge syndrome critical region gene 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-59750078-2	chr9	59749978	59750178	+	961.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001172069, intron 1 of 2)	intron (NM_001172069, intron 1 of 2)	571.0	NM_001172069	71599.0	Mm.279070	NM_027838	ENSMUSG00000051705	Senp8	9130010J17Rik|AU020827|Den1|Nedp1|Prsc2	SUMO/sentrin specific peptidase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-11349459-2	chr16	11349359	11349559	+	804.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028964, intron 2 of 20)	intron (NM_028964, intron 2 of 20)	26555.0	NM_028964	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-57826404-2	chr6	57826304	57826504	+	557.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1279.0	NM_146168	232023.0	Mm.24642	NM_146168	ENSMUSG00000037788	Vopp1	AW146242|Ecop	vesicular, overexpressed in cancer, prosurvival protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55253777-5	chr19	55253623	55253823	+	973.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_027976, exon 1 of 22)	5' UTR (NM_027976, exon 1 of 22)	354.0	NM_027976	433256.0	Mm.292056	NM_027976	ENSMUSG00000024981	Acsl5	1700030F05Rik|ACS2|ACS5|Facl5	acyl-CoA synthetase long-chain family member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-30268025-9	chr11	30267885	30268085	+	911.740723	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-48213.0	NM_175836	20742.0	Mm.123110	NM_009260	ENSMUSG00000020315	Sptbn1	9930031C03Rik|AL033301|SPTB2|Spnb-2|Spnb2|elf1|elf3|mKIAA4049	spectrin beta, non-erythrocytic 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-129211559-3	chr6	129211475	129211675	+	926.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26470.0	NR_040265	76432.0	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78862515-4	chr15	78862399	78862599	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-6970.0	NM_025622	107753.0	Mm.390793	NM_025622	ENSMUSG00000043501	Lgals2	2200008F12Rik|AI324147	lectin, galactose-binding, soluble 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165317085-4	chr2	165316982	165317182	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302754)	promoter-TSS (NM_001302754)	-731.0	NM_001302754	140579.0	Mm.35064	NM_080287	ENSMUSG00000017670	Elmo2	1190002F24Rik|CED-12	engulfment and cell motility 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124476002-4	chr5	124475907	124476107	+	974.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030259, intron 1 of 3)	(TG)n|Simple_repeat|Simple_repeat	2228.0	NM_030259	80291.0	Mm.425280	NM_030259	ENSMUSG00000029401	Rilpl2	-	Rab interacting lysosomal protein-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-6388671-3	chr15	6388509	6388709	+	672.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037905, intron 1 of 13)	intron (NM_001037905, intron 1 of 13)	1861.0	NM_001310446	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-22409077-4	chr6	22409003	22409203	+	911.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53022.0	NM_138587	27999.0	Mm.490307	NM_138587	ENSMUSG00000029672	Fam3c	D6Wsu176e|Ilei	family with sequence similarity 3, member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-54218469-4	chr13	54218356	54218556	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153432, intron 2 of 3)	intron (NR_153432, intron 2 of 3)	26323.0	NR_153432	15466.0	Mm.57243	NM_008286	ENSMUSG00000034987	Hrh2	H2R|HH2R	histamine receptor H2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-107335933-2	chr11	107335833	107336033	+	775.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359616, intron 2 of 8)	intron (NM_001359616, intron 2 of 8)	134787.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-29250288-2	chr19	29250188	29250388	+	620.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1515.0	NM_001048177	16452.0	Mm.275839	NM_008413	ENSMUSG00000024789	Jak2	Fd17	Janus kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-90431147-4	chr9	90431060	90431260	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-160391.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	3.46605139365196	3.80126500937842	3.93040626619472	3.88210077468241	3.12374018652214	2.76677401771135	3.47574659068006	2.86166849729402	-1.08091986324294	0.0479357156444525	0.317869961110247
Merged-chr19-5796947-4	chr19	5796911	5797111	+	897.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_002847, exon 1 of 1)	non-coding (NR_002847, exon 1 of 1)	-1030.0	NR_144621	109146451.0		NR_144621		Mascrna	-	Malat1-associated small cytoplasmic RNA	scRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-117231444-4	chr2	117231355	117231555	+	963.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18284.0	NM_026620	68215.0	Mm.219389	NM_026620	ENSMUSG00000027349	Fam98b	2610510H03Rik	family with sequence similarity 98, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44239647-2	chr9	44239547	44239747	+	984.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1030.0	NM_001360344	270150.0	Mm.347681	NM_001081369	ENSMUSG00000070306	Ccdc153	-	coiled-coil domain containing 153	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-13303595-2	chr7	13303495	13303695	+	894.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083188, intron 20 of 28)	MLT1J|LTR|ERVL-MaLR	-22072.0	NM_001168504	232889.0	Mm.223639	NM_001004762	ENSMUSG00000033847	Pla2g4c	D7Ertd445e	phospholipase A2, group IVC (cytosolic, calcium-independent)	protein-coding	1.07781896279043	0.813269212022358	1.07479049009015	0.598198198711911	1.34054869306999	0.818866276872256	1.08497150200282	0.599416588199054	0.444693895794199	0.770531176554165	1
Merged-chr6-24984802-3	chr6	24984700	24984900	+	911.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28675.0	NM_177013	319832.0	Mm.127446	NM_177013	ENSMUSG00000048022	Tmem229a	6332401O19Rik	transmembrane protein 229A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-106394927-2	chr1	106394827	106395027	+	627.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_133821)	TTS (NM_133821)	151704.0	NR_106164	102466254.0		NR_106164	ENSMUSG00000098344	Mir3473f	Gm27846|mmu-mir-3473f	microRNA 3473f	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-59880438-2	chr10	59880338	59880538	+	762.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019965, intron 1 of 8)	intron (NM_019965, intron 1 of 8)	847.0	NM_019965	56709.0	Mm.103610	NM_019965	ENSMUSG00000020109	Dnajb12	Dj10|mDj10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-27283547-4	chr3	27283462	27283662	+	952.43335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33515.0	NM_009425	22035.0	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-32419659-4	chr16	32419567	32419767	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025329)	promoter-TSS (NM_025329)	-35.0	NR_154990	66061.0	Mm.302693	NM_025329	ENSMUSG00000014075	Tctex1d2	0610012D17Rik|2410011K15Rik	Tctex1 domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-145180857-2	chr5	145180760	145180960	+	857.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291249, intron 7 of 7)	intron (NM_001291249, intron 7 of 7)	10732.0	NM_020582	57423.0	Mm.133551	NM_020582	ENSMUSG00000038690	Atp5j2	1110019H14Rik	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F2	protein-coding	-0.0093241449333713	0.511690025579236	0.00257142073588967	-0.00189361589710155	-0.00821730263225334	0.521383336262766	0.00384641053328103	0.649263796768714	1.30421573071954	0.561400461862855	1
Merged-chr3-108255787-2	chr3	108255687	108255887	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-1139.0	NM_011967	26442.0	Mm.208883	NM_011967	ENSMUSG00000068749	Psma5	ZETA	proteasome (prosome, macropain) subunit, alpha type 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84187369-2	chr8	84187318	84187518	+	796.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8457.0	NR_029821	723819.0		NR_029821	ENSMUSG00000065483	Mir181c	Mirn181c|mir-181c	microRNA 181c	ncRNA	3.48501606229246	4.01445332722332	1.60043412085437	3.15639554366825	3.45361826335757	3.56975752440065	3.79995305449898	1.83973380538642	0.047271052653328	0.951326379252159	0.998431161219273
Merged-chr10-127662986-2	chr10	127662886	127663086	+	971.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_008668, intron 5 of 6)	intron (NM_008668, intron 5 of 6)	3717.0	NM_001122895	17937.0	Mm.336898	NM_008668	ENSMUSG00000025402	Nab2	AI451907	Ngfi-A binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-57106111-1	chr17	57106011	57106211	+	832.0	f1_c57bl6.idr	promoter-TSS (NR_033508)	promoter-TSS (NR_033508)	-169.0	NR_033508	100169874.0	Mm.76700	NR_033508	ENSMUSG00000079414	Gm11110	-	predicted gene 11110	ncRNA	-0.559749682778348	-0.551948175727637	-0.554535858411709	-0.193597402099383	-0.327896719179851	-0.24005287426874	-0.55396778145517	-0.556167439936445	0.498458188516623	0.853271604226456	1
Merged-chr9-111562794-4	chr9	111562705	111562905	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016853, intron 10 of 10)	intron (NM_016853, intron 10 of 10)	123724.0	NM_172928	245038.0	Mm.26361	NM_172928	ENSMUSG00000032500	Dclk3	BC056929|C730036H08|Dcamkl3	doublecortin-like kinase 3	protein-coding	3.46304286384461	3.10498066350117	3.99880771737835	3.64453555297814	3.55725147045872	3.57072230798711	4.02771967466084	3.43413739788136	0.106930399140711	0.836901101936215	0.998431161219273
Merged-chr13-101685104-1	chr13	101685004	101685204	+	618.0	f0_balb.idr	intron (NM_001024955, intron 9 of 9)	intron (NM_001024955, intron 9 of 9)	7526.0	NM_001024955	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-79640142-4	chr8	79640044	79640244	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081164, intron 1 of 20)	CpG	468.0	NM_001081164	73945.0	Mm.34348	NM_001081164	ENSMUSG00000036990	Otud4	4930431L18Rik|AI449692|D8Ertd69e|mKIAA1046	OTU domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-120936519-4	chr9	120936420	120936620	+	929.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007614, intron 1 of 14)	intron (NM_007614, intron 1 of 14)	2942.0	NM_001165902	12387.0	Mm.291928	NM_007614	ENSMUSG00000006932	Ctnnb1	Bfc|Catnb|Mesc	catenin (cadherin associated protein), beta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81526943-4	chr10	81526854	81527054	+	824.325012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2729.0	NM_010304	14676.0	Mm.1546	NM_010304	ENSMUSG00000034792	Gna15	G[a]15|Galpha15	guanine nucleotide binding protein, alpha 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-60531460-4	chr3	60531374	60531574	+	961.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310514, intron 2 of 8)	intron (NM_001310514, intron 2 of 8)	30295.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	2.41674706468902	2.73818196607267	1.34336064735534	2.0018340820609	3.91144908260803	2.63589962680918	2.66168259197741	1.82005925095792	1.46083703740354	0.0992234372164189	0.490045060259026
Merged-chr16-32144127-2	chr16	32144027	32144227	+	693.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001347182, exon 2 of 2)	exon (NM_001347182, exon 2 of 2)	21467.0	NM_146069	224109.0	Mm.33498	NM_146069	ENSMUSG00000052384	Nrros	E430025L02Rik|Lrcc33|Lrrc33	negative regulator of reactive oxygen species	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-94566065-4	chr15	94565960	94566160	+	998.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029926, intron 10 of 11)	ORR1D2|LTR|ERVL-MaLR	22400.0	NM_029926	266632.0	Mm.422858	NM_029926	ENSMUSG00000059883	Irak4	8430405M07Rik|9330209D03Rik|IRAK-4|NY-REN-64	interleukin-1 receptor-associated kinase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-88466120-2	chr2	88466020	88466220	+	675.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2B2|LINE|L1	4778.0	NM_146529	258522.0	Mm.377550	NM_146529	ENSMUSG00000049372	Olfr1183	MOR230-6	olfactory receptor 1183	protein-coding	-0.767363427233978	-0.755992389853973	-0.759706700194068	-0.762579752146881	0.0745690082753594	-0.75515661801646	-0.758886556781964	-0.582838136964604	3.38152392773518	0.23416303778743	1
Merged-chr10-80431266-1	chr10	80431166	80431366	+	881.0	f1_c57bl6.idr	intron (NM_001164153, intron 1 of 18)	intron (NM_001164153, intron 1 of 18)	2387.0	NM_001164150	21423.0	Mm.3406	NM_011548	ENSMUSG00000020167	Tcf3	A1|AA408400|ALF2|AW209082|E12|E12/E47|E2A|E47|KA1|ME2|Pan1|Pan2|TCF-3|Tcfe2a|VDIR|bHLHb21	transcription factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78572795-4	chr15	78572690	78572890	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009008)	promoter-TSS (NM_009008)	-7.0	NM_009008	19354.0	Mm.1972	NM_009008	ENSMUSG00000033220	Rac2	AI323801|AI452260	Rac family small GTPase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-51972287-4	chr2	51972181	51972381	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019401, intron 1 of 7)	intron (NM_019401, intron 1 of 7)	927.0	NM_001141949	64685.0	Mm.7491	NM_019401	ENSMUSG00000026946	Nmi	-	N-myc (and STAT) interactor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-46371208-4	chr2	46371111	46371311	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	674606.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-85433676-2	chr6	85433544	85433744	+	629.0	f0_balb.idr|f0_c57.idr	intron (NM_144918, intron 1 of 12)	intron (NM_144918, intron 1 of 12)	1668.0	NM_144918	232187.0	Mm.219946	NM_144918	ENSMUSG00000033706	Smyd5	AW536703|NN8-4AG|Rai15|Rrg1	SET and MYND domain containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-139012590-4	chr3	139012496	139012696	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286759, intron 4 of 14)	intron (NM_001286759, intron 4 of 14)	62605.0	NM_145544	229877.0	Mm.28893	NM_145544	ENSMUSG00000028149	Rap1gds1	BC011279|GDS1	RAP1, GTP-GDP dissociation stimulator 1	protein-coding	3.79350822004309	3.92017805123939	3.72554355724449	3.98414399423069	3.39940636033972	2.62365435790499	3.95036200442848	2.89570514138631	-0.801067754303788	0.142688287133266	0.589929038258074
Merged-chr5-115532135-4	chr5	115532044	115532244	+	973.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011223, intron 1 of 10)	intron (NM_011223, intron 1 of 10)	25468.0	NM_133915	19303.0	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-35118839-4	chr9	35118734	35118934	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_029475, intron 2 of 5)	intron (NR_029475, intron 2 of 5)	-1970.0	NM_009178	20443.0	Mm.275973	NM_009178	ENSMUSG00000032038	St3gal4	SIAT4-C|ST3Gal IV|ST3GalIV|Siat4c	ST3 beta-galactoside alpha-2,3-sialyltransferase 4	protein-coding	3.50693106210846	3.32049083822678	4.03164620754826	3.00480473137702	3.46935375207455	3.7996754900719	4.00468008953024	3.13072836753818	0.17555190676196	0.748284616371692	0.998431161219273
Merged-chr15-88539523-2	chr15	88539423	88539623	+	746.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	-60779.0	NM_027306	70073.0	Mm.45306	NM_027306	ENSMUSG00000054117	Zdhhc25	1700030J15Rik	zinc finger, DHHC domain containing 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-129153956-3	chr6	129153846	129154046	+	725.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	-26669.0	NM_053109	93694.0	Mm.197536	NM_053109	ENSMUSG00000030157	Clec2d	Clr-b|Clrb|Ocil	C-type lectin domain family 2, member d	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-43369377-3	chr11	43369271	43369471	+	967.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	5090.0	NR_029558	387164.0		NR_029558	ENSMUSG00000065601	Mir146	Mirn146|miR-146a|mmu-mir-146	microRNA 146	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-113612801-4	chr7	113612715	113612915	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-47828.0	NR_126544	69295.0	Mm.396150	NR_126544	ENSMUSG00000084984	Far1os	1700006P19Rik	fatty acyl CoA reductase 1, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34142082-1	chr17	34141982	34142182	+	595.0	f1_c57bl6.idr	Intergenic	Intergenic	-3334.0	NM_010388	15000.0	Mm.195060	NM_010388	ENSMUSG00000037548	H2-DMb2	H-2Mb2|H2-Mb2	histocompatibility 2, class II, locus Mb2	protein-coding	1.35659723627106	1.24426144041076	0.791000890870081	1.75371505392981	1.36957704002557	2.00180432725098	0.794616268974884	0.780447106840219	0.069093274554217	0.961069522297284	0.998431161219273
Merged-chr9-57762718-4	chr9	57762639	57762839	+	784.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007713, intron 1 of 12)	intron (NM_007713, intron 1 of 12)	3121.0	NM_007713	102414.0	Mm.25720	NM_007713	ENSMUSG00000032316	Clk3	AI256811	CDC-like kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-6578578-4	chr6	6578435	6578635	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009169, exon 1 of 3)	exon (NM_009169, exon 1 of 3)	123.0	NM_009169	20422.0	Mm.2469	NM_009169	ENSMUSG00000042541	Sem1	DSS1|Shfdg1|Shfg|Shfm1	SEM1, 26S proteasome complex subunit	protein-coding	5.44083608492243	4.96776063119327	6.42644988658688	5.27152955002756	5.18477085209274	5.76886540355271	5.52696045878218	4.7059663894838	-0.342720064639934	0.337121753421934	0.83703930093451
Merged-chr6-38533678-4	chr6	38533582	38533782	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1179.0	NM_025363	66117.0	Mm.158971	NM_025363	ENSMUSG00000019689	Fmc1	1110001J03Rik	formation of mitochondrial complex V assembly factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-77015999-4	chr5	77015882	77016082	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027970)	promoter-TSS (NM_027970)	-41.0	NM_027970	71868.0	Mm.151092	NM_027970	ENSMUSG00000029248	Thegl	1700023E05Rik	theg spermatid protein like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153241458-4	chr2	153241357	153241557	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018807)	promoter-TSS (NM_018807)	-75.0	NM_080463	140484.0	Mm.293761	NM_080463	ENSMUSG00000046020	Pofut1	O-FucT-1|mKIAA0180	protein O-fucosyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117482478-4	chr8	117482374	117482574	+	963.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	-15801.0	NM_172285	234779.0	Mm.192699	NM_172285	ENSMUSG00000034330	Plcg2	PLC-gamma-2|PLCgamma2|Plcg-2	phospholipase C, gamma 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-102692651-2	chr13	102692551	102692751	+	645.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008533)	promoter-TSS (NM_008533)	-896.0	NM_001360519	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-57499376-1	chr6	57499276	57499476	+	600.0	f0_balb.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	36050.0	NM_175523	243382.0	Mm.396893	NM_175523	ENSMUSG00000037826	Ppm1k	2900063A19Rik|A930026L03Rik|PP2Cm	protein phosphatase 1K (PP2C domain containing)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-39371649-2	chr10	39371549	39371749	+	598.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001122893, intron 1 of 13)	intron (NM_001122893, intron 1 of 13)	1850.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-128609433-2	chr4	128609331	128609531	+	616.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177758, intron 1 of 7)	intron (NM_177758, intron 1 of 7)	667.0	NM_177758	269585.0	Mm.153291	NM_177758	ENSMUSG00000061894	Zscan20	C130001F22|Zfp31|Zkscan20	zinc finger and SCAN domains 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19782719-1	chr7	19782619	19782819	+	552.0	f1_balb.idr	intron (NM_001161844, intron 8 of 10)	ID4_|SINE|ID	-12187.0	NM_020486	57278.0	Mm.29236	NM_020486	ENSMUSG00000002980	Bcam	1200005K12Rik|B-CAM|Gplu|Lu	basal cell adhesion molecule	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-59729739-2	chr9	59729639	59729839	+	670.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	20910.0	NM_001172069	71599.0	Mm.279070	NM_027838	ENSMUSG00000051705	Senp8	9130010J17Rik|AU020827|Den1|Nedp1|Prsc2	SUMO/sentrin specific peptidase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-148933315-4	chr3	148933224	148933424	+	975.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081298, intron 1 of 23)	intron (NM_001081298, intron 1 of 23)	21311.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-42912358-4	chr17	42912260	42912460	+	996.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35936.0	NM_009847	12488.0	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-9503206-4	chr18	9503142	9503342	+	997.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53088.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-120352334-1	chr2	120352234	120352434	+	678.0	f1_c57bl6.idr	intron (NM_178851, intron 1 of 24)	intron (NM_178851, intron 1 of 24)	799.0	NR_027618	269338.0	Mm.246131	NM_147153	ENSMUSG00000027291	Vps39	A230065P22Rik|AW743070|Vam6|Vam6P|mVam6	VPS39 HOPS complex subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-10003611-2	chr1	10003511	10003711	+	581.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145692, intron 1 of 8)	MT2B|LTR|ERVL	5525.0	NR_110971	69312.0	Mm.386795	NM_027033	ENSMUSG00000025916	Ppp1r42	1700011J18Rik|4930418G15Rik|Lrrc67|TLRR	protein phosphatase 1, regulatory subunit 42	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-112332693-2	chr2	112332593	112332793	+	601.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_133648, intron 2 of 24)	Lx8b|LINE|L1	35334.0	NM_026519	68032.0	Mm.220942	NM_026519	ENSMUSG00000027131	Emc4	2610318K02Rik|Tmem85	ER membrane protein complex subunit 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-23819858-2	chr11	23819758	23819958	+	756.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48888.0	NM_009044	19696.0	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91143176-1	chr2	91143076	91143276	+	1000.0	f1_c57bl6.idr	intron (NM_001177719, intron 31 of 34)	intron (NM_001177719, intron 31 of 34)	25032.0	NM_008653	17868.0	Mm.10728	NM_008653	ENSMUSG00000002100	Mybpc3	-	myosin binding protein C, cardiac	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-9486566-4	chr18	9486485	9486685	+	954.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36431.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-155482227-1	chr2	155482127	155482327	+	555.0	f1_balb.idr	Intergenic	MER91B|DNA|hAT-Tip100	32619.0	NM_144786	207182.0	Mm.41757	NM_144786	ENSMUSG00000027603	Ggt7	1110017C11Rik|6330563L03Rik|Ggtl3	gamma-glutamyltransferase 7	protein-coding	1.75190474518036	0.981555760116592	0.717874652987085	0.921758992100103	1.77003487538073	1.85890599506952	0.721521562223247	0.707219527159232	0.744241342838258	0.615041357440251	0.977303445845731
Merged-chr12-95745255-4	chr12	95745165	95745365	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201518, intron 1 of 1)	intron (NM_201518, intron 1 of 1)	53039.0	NM_201518	399558.0	Mm.341948	NM_201518	ENSMUSG00000047414	Flrt2	-	fibronectin leucine rich transmembrane protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-12991305-4	chr17	12991203	12991403	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175394, intron 1 of 5)	intron (NM_175394, intron 1 of 5)	956.0	NM_001113533	60532.0	Mm.275521	NM_175394	ENSMUSG00000060475	Wtap	2810408K05Rik|9430038B09Rik	Wilms tumour 1-associating protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-11442741-2	chr2	11442641	11442841	+	780.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-44241.0	NR_040615	77543.0	Mm.490670	NR_040615	ENSMUSG00000102674	8030442B05Rik	-	RIKEN cDNA 8030442B05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-85458226-3	chr17	85458117	85458317	+	791.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028576, exon 11 of 11)	3' UTR (NM_028576, exon 11 of 11)	160179.0	NR_038084	100043902.0	Mm.150838	NR_015385	ENSMUSG00000093460	Six3os1	D17Mgi26|E130112H22Rik|Rncr1|Six3os	SIX homeobox 3, opposite strand 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-122149574-3	chr2	122149473	122149673	+	890.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009735, intron 1 of 3)	RSINE1|SINE|B4	1886.0	NM_009735	12010.0	Mm.163	NM_009735	ENSMUSG00000060802	B2m	Ly-m11|beta2-m|beta2m	beta-2 microglobulin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128620495-2	chr2	128620395	128620595	+	625.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008569, intron 43 of 47)	intron (NM_008569, intron 43 of 47)	28154.0	NM_001310641	241634.0	Mm.297682	NM_001310641	ENSMUSG00000074812	Spdye4c	Gm355|SpeedyB3|SpyB3	speedy/RINGO cell cycle regulator family, member E4C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-38543227-2	chr18	38543127	38543327	+	808.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58041.0	NM_011898	24066.0	Mm.42038	NM_011898	ENSMUSG00000024427	Spry4	A030006O18Rik|sprouty4	sprouty RTK signaling antagonist 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-38483511-4	chr15	38483408	38483608	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7039.0	NR_105916	102465574.0		NR_105916	ENSMUSG00000099110	Mir6951	Gm27765|mmu-mir-6951	microRNA 6951	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-51694255-3	chr12	51694188	51694388	+	875.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001329698, intron 1 of 5)	intron (NM_001329698, intron 1 of 5)	-2374.0	NM_052973	94186.0	Mm.65979	NM_052973	ENSMUSG00000020954	Strn3	Gs2na|SG2NA	striatin, calmodulin binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-134368934-2	chr1	134368834	134369034	+	605.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6928.0	NR_151737	57439.0	Mm.393140	NM_020588	ENSMUSG00000042305	Tmem183a	1300007B12Rik|1700020N19Rik|Tmem183	transmembrane protein 183A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44898575-2	chr7	44898475	44898675	+	777.375	f1_balb.idr|f1_c57bl6.idr	exon (NM_027376, exon 6 of 11)	exon (NM_027376, exon 6 of 11)	2496.0	NM_027376	70300.0	Mm.276298	NM_027376	ENSMUSG00000011658	Fuz	2600013E07Rik|b2b1273Clo	fuzzy planar cell polarity protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-132303747-2	chr7	132303647	132303847	+	557.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029935, intron 1 of 7)	L1MB8|LINE|L1	-11917.0	NR_028578	100043682.0	Mm.482794	NR_028578	ENSMUSG00000109270	Gm10584	-	predicted gene 10584	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-94438231-4	chr2	94438137	94438337	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001349003)	promoter-TSS (NM_001349003)	-51.0	NM_001349003	11800.0	Mm.181824	NM_007466	ENSMUSG00000027193	Api5	AAC-11|AI196452|API-5	apoptosis inhibitor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-98051919-3	chr3	98051795	98051995	+	951.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010928, intron 2 of 33)	intron (NM_010928, intron 2 of 33)	38357.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-72812480-4	chr5	72812378	72812578	+	955.19165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013689, intron 3 of 17)	intron (NM_013689, intron 3 of 17)	55970.0	NM_001113461	21682.0	Mm.319581	NM_013689	ENSMUSG00000029217	Tec	-	tec protein tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-59840639-2	chr13	59840539	59840739	+	636.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-17492.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-62705591-2	chr1	62705491	62705691	+	573.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077404, intron 1 of 16)	intron (NM_001077404, intron 1 of 16)	2274.0	NM_001077407	18187.0	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-98269845-4	chr12	98269742	98269942	+	952.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008152, intron 1 of 1)	intron (NM_008152, intron 1 of 1)	1207.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91399722-2	chr16	91399622	91399822	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010509, intron 8 of 8)	intron (NM_010509, intron 8 of 8)	-6513.0	NM_008349	16155.0	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-25726577-3	chr6	25726469	25726669	+	968.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36589.0	NM_010338	14763.0	Mm.409670	NM_010338	ENSMUSG00000039904	Gpr37	AI848630|Pael-R	G protein-coupled receptor 37	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-118562151-3	chr3	118562051	118562251	+	819.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_170778)	promoter-TSS (NM_170778)	-29.0	NM_170778	99586.0	Mm.27907	NM_170778	ENSMUSG00000033308	Dpyd	AI315208|DHPDHase|DPD|E330028L06Rik	dihydropyrimidine dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-181170447-4	chr1	181170334	181170534	+	999.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19503.0	NM_030131	98417.0	Mm.38229	NM_030131	ENSMUSG00000062169	Cnih4	AI647760|AW050376|CNIH-4|D530030D03Rik|E430023H19Rik|HSPC163	cornichon family AMPA receptor auxiliary protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140596694-2	chr5	140596594	140596794	+	764.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-10647.0	NM_008494	16848.0	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-86232417-3	chr17	86232319	86232519	+	908.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011104, intron 1 of 14)	MIR|SINE|MIR	54759.0	NR_045435	72104.0	Mm.443401	NR_045435	ENSMUSG00000100738	2010106C02Rik	-	RIKEN cDNA 2010106C02 gene	ncRNA	-0.00410807390730222	0.0135983477749502	0.007811374240142	0.172305473187825	0.580800644269331	0.760713788913705	0.00908883535124458	0.175333824608758	3.21961606539141	0.124713349691785	1
Merged-chr17-94887160-1	chr17	94887060	94887260	+	599.0	f1_balb.idr	Intergenic	(TTAGGG)n|Simple_repeat|Simple_repeat	22242.0	NM_001024731	100044193.0		NM_001024731	ENSMUSG00000095193	Gm20939	-	predicted gene, 20939	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83436736-4	chr6	83436639	83436839	+	896.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347313, intron 3 of 11)	intron (NM_001347313, intron 3 of 11)	4939.0	NM_183138	194388.0	Mm.211030	NM_183138	ENSMUSG00000034832	Tet3	B430006D22Rik|BC037432|D230004J03Rik	tet methylcytosine dioxygenase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-17583509-4	chr17	17583409	17583609	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172827, intron 1 of 17)	ORR1E|LTR|ERVL-MaLR	40980.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	2.1256684524143	2.76553351800388	2.50510664785893	2.12878364860348	1.63534597704801	1.99330610438821	2.07722173372342	1.51777135845548	-1.51217211774813	0.0968382095714519	0.483573045964878
Merged-chr6-73239047-1	chr6	73238947	73239147	+	562.0	f0_c57.idr	Intergenic	Intergenic	-9458.0	NM_019879	56451.0	Mm.29845	NM_019879	ENSMUSG00000052738	Suclg1	1500000I01Rik|Sucla1	succinate-CoA ligase, GDP-forming, alpha subunit	protein-coding	0.620135928048117	0.928313912050611	2.0418602401102	1.00359383099034	0.795647515979283	0.468988268894502	0.454540086520992	0.441887956000015	-3.43385072410278	0.0380538830481116	0.277494219293705
Merged-chr17-71561744-2	chr17	71561644	71561844	+	866.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NR_015549, intron 5 of 6)	intron (NR_015549, intron 5 of 6)	9683.0	NM_029254	70891.0	Mm.477599	NM_029254	ENSMUSG00000052525	Spdya	4921517J08Rik|4930548B21Rik|GS4|MLZ-465|Spdy1	speedy/RINGO cell cycle regulator family, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-188980273-2	chr1	188980192	188980392	+	647.75	f0_balb.idr|f0_c57.idr	intron (NR_153196, intron 13 of 17)	intron (NR_153196, intron 13 of 17)	27548.0	NM_001359577	226823.0	Mm.209880	NM_172650	ENSMUSG00000026608	Kctd3	4930438A20Rik|9330185B06|E330032J19Rik|NY-REN-45	potassium channel tetramerisation domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-70362029-2	chr7	70361929	70362129	+	648.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_183261, intron 1 of 2)	intron (NM_183261, intron 1 of 2)	-1436.0	NM_009697	11819.0	Mm.158143	NM_009697	ENSMUSG00000030551	Nr2f2	2700033K02Rik|9430015G03Rik|ARP-1|Aporp1|COUP-TF2|COUP-TFII|COUPTFB|EAR3|SVP40|Tcfcoup2	nuclear receptor subfamily 2, group F, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88172354-2	chr3	88172254	88172454	+	765.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_133665)	TTS (NM_133665)	5431.0	NR_045997	76642.0	Mm.424420	NR_045997	ENSMUSG00000096935	1700113A16Rik	2210408E11Rik|AA408983	RIKEN cDNA 1700113A16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-97782901-4	chr15	97782793	97782993	+	776.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1472.0	NM_026353	67739.0	Mm.28955	NM_026353	ENSMUSG00000081534	Slc48a1	4930570C03Rik	solute carrier family 48 (heme transporter), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-35499045-2	chr8	35498945	35499145	+	599.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3512.0	NM_026067	67276.0	Mm.207534	NM_026067	ENSMUSG00000031527	Eri1	3'hexo|3110010F15Rik|Thex1|eri-1	exoribonuclease 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-21043086-4	chr5	21043007	21043207	+	911.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011203, intron 1 of 17)	ORR1F|LTR|ERVL-MaLR	-7860.0	NM_001356590	19248.0	Mm.319117	NM_011203	ENSMUSG00000028771	Ptpn12	P19-PTP|PTP-P19|PTP-PEST|PTPG1	protein tyrosine phosphatase, non-receptor type 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-144268799-2	chr2	144268699	144268899	+	946.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_024225, intron 1 of 12)	intron (NM_024225, intron 1 of 12)	1773.0	NM_024225	69178.0	Mm.273379	NM_024225	ENSMUSG00000027423	Snx5	0910001N05Rik|1810032P22Rik|AU019504|D2Ertd52e	sorting nexin 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-54439993-2	chr11	54439893	54440093	+	600.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_173753, intron 1 of 17)	L1ME1|LINE|L1	1814.0	NM_173753	216742.0	Mm.34087	NM_173753	ENSMUSG00000035992	Fnip1	A730024A03Rik|AI838773|AW557298	folliculin interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-90282971-2	chr5	90282871	90283071	+	660.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_030886, exon 15 of 34)	exon (NM_030886, exon 15 of 34)	-58975.0	NM_001163456	231430.0	Mm.319697	NM_001033310	ENSMUSG00000035505	Cox18	BC038311	cytochrome c oxidase assembly protein 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-94621906-1	chr3	94621806	94622006	+	554.5	f0_balb.idr	intron (NM_001293728, intron 8 of 11)	intron (NM_001293728, intron 8 of 11)	36966.0	NM_001293728	22156.0	Mm.10214	NM_011656	ENSMUSG00000005968	Tuft1	-	tuftelin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-37556254-2	chr19	37556154	37556354	+	784.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175353, intron 1 of 21)	Lx8|LINE|L1	5836.0	NM_175353	107371.0	Mm.24865	NM_175353	ENSMUSG00000053799	Exoc6	4833405E05Rik|AW413330|C430002C19|Sec15|Sec15l1|hbd|msec15	exocyst complex component 6	protein-coding	-0.314689697730229	-0.55384899836632	-0.557048883653525	-0.559505741032878	-0.308649554824444	-0.553125298296825	-0.556344623739275	-0.0515483912832493	1.60665056417396	0.549904192954923	1
Merged-chr11-20729582-1	chr11	20729482	20729682	+	579.0	f0_balb.idr	intron (NM_181411, intron 1 of 8)	intron (NM_181411, intron 1 of 8)	11974.0	NM_001290545	216549.0	Mm.356580	NM_181411	ENSMUSG00000049659	Aftph	-	aftiphilin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-116583288-4	chr3	116583178	116583378	+	910.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_175413)	TTS (NM_175413)	11609.0	NR_152258	229780.0	Mm.259648	NM_030016	ENSMUSG00000033439	Trmt13	4631408H19Rik|A330067P21|A930028L21Rik|Ccdc76	tRNA methyltransferase 13	protein-coding	1.01846906895734	1.90445124428649	2.52111958215628	1.05295751633123	2.26152701765132	1.36861510280073	1.85109060724342	1.91556800534912	0.221132234761455	0.851297082730262	0.998431161219273
Merged-chr13-64181123-3	chr13	64181052	64181252	+	939.2000119999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019986, intron 5 of 7)	intron (NM_019986, intron 5 of 7)	19286.0	NM_019986	56541.0	Mm.40989	NM_019986	ENSMUSG00000021476	Habp4	4933413D03Rik|4933428J01Rik	hyaluronic acid binding protein 4	protein-coding	2.43909691027504	2.91779306662023	2.43886660628758	1.60609473686562	2.62276751457076	2.65596876957688	1.65768374635548	2.13441556186472	-0.218039184207677	0.804513726885655	0.998431161219273
Merged-chr4-137308515-2	chr4	137308295	137308495	+	766.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30760.0	NM_009523	22417.0	Mm.20355	NM_009523	ENSMUSG00000036856	Wnt4	Wnt-4	wingless-type MMTV integration site family, member 4	protein-coding	-1.20406370813143	-1.56956373024278	-1.57884638916872	-1.58647144159385	-1.598104728449	-1.56755213932999	-1.57674499865798	-1.58510656085539	-1.70745470802464	0.626337835847419	1
Merged-chr19-10436145-2	chr19	10436045	10436245	+	683.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_018801, intron 4 of 8)	intron (NM_018801, intron 4 of 8)	21302.0	NM_001111140	278795.0	Mm.490638	NM_001111140	ENSMUSG00000090291	Lrrc10b	Gm705|SerdinR	leucine rich repeat containing 10B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101452580-2	chr11	101452480	101452680	+	614.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027320, intron 1 of 6)	intron (NM_027320, intron 1 of 6)	4168.0	NM_027320	70110.0	Mm.45558	NM_027320	ENSMUSG00000010358	Ifi35	2010008K16Rik|AW986054|IFP35|ifi-35	interferon-induced protein 35	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19456158-2	chr7	19456058	19456258	+	889.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_172279, intron 1 of 16)	intron (NM_172279, intron 1 of 16)	2336.0	NM_172279	232944.0	Mm.260504	NM_172279	ENSMUSG00000030397	Mark4	2410090P21Rik|C79806|Markl1	MAP/microtubule affinity regulating kinase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-9103742-4	chr5	9103667	9103867	+	924.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081029, intron 2 of 4)	intron (NM_001081029, intron 2 of 4)	3030.0	NM_001081029	652925.0	Mm.439954	NM_001081029	ENSMUSG00000079659	Tmem243	4930420K17Rik|E030031F02Rik	transmembrane protein 243, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71612665-4	chr8	71612664	71612864	+	884.535706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146211, intron 2 of 11)	L2c|LINE|L2	1740.0	NM_146211	234407.0	Mm.240885	NM_146211	ENSMUSG00000034807	Colgalt1	2810024B22Rik|Glt25d1	collagen beta(1-O)galactosyltransferase 1	protein-coding	1.3822065890615	2.46122226887543	1.48890003902902	1.2704352158631	1.7700955309574	1.34573760759347	1.92636631495454	1.74504318081091	-0.135770802340615	0.900537266630239	0.998431161219273
Merged-chr9-59659545-4	chr9	59659464	59659664	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253883, intron 1 of 10)	intron (NM_001253883, intron 1 of 10)	3196.0	NM_011099	18746.0	Mm.326167	NM_011099	ENSMUSG00000032294	Pkm	AA414905|AL024370|AL024424|Pk-2|Pk-3|Pk3|Pkm2	pyruvate kinase, muscle	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67540834-2	chr10	67540734	67540934	+	748.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_010118, exon 2 of 2)	exon (NM_010118, exon 2 of 2)	2904.0	NM_001347458	13654.0	Mm.290421	NM_010118	ENSMUSG00000037868	Egr2	Egr-2|Krox-20|Krox20|NGF1-B|Zfp-25|Zfp-6	early growth response 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72098145-3	chr6	72098040	72098240	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011375, intron 1 of 6)	intron (NM_011375, intron 1 of 6)	532.0	NM_011375	20454.0	Mm.38248	NM_011375	ENSMUSG00000056091	St3gal5	3S-T|Siat9|[a]2	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133093662-2	chr4	133093564	133093764	+	895.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36969.0	NM_153423	242687.0	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	0.474979710902714	-0.245387580668811	-0.250325820679578	-0.254142799996458	0.412367442372248	-0.244275796534574	-0.249235791526863	-0.253475531899914	-0.1755903833357	0.945674664106991	1
Merged-chr19-4113311-4	chr19	4113234	4113434	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001276284)	TTS (NM_001276284)	8241.0	NM_001276284	11632.0	Mm.10433	NM_016666	ENSMUSG00000024847	Aip	AA408703|AW476050|Ara9|D19Bwg1412e|Fkbp16|Xap2	aryl-hydrocarbon receptor-interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127541373-3	chr10	127541275	127541475	+	859.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 80 of 88)	intron (NM_008512, intron 80 of 88)	-6816.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	2.89642124849158	2.12613408016488	2.53536759612126	2.9686354458971	2.84384923720056	3.08781301044067	2.2566971069814	3.06223414371693	0.331956805220104	0.646284674302407	0.984116759910594
Merged-chr4-89488035-1	chr4	89487935	89488135	+	675.0	f0_balb.idr	intron (NR_132431, intron 7 of 9)	intron (NR_132431, intron 7 of 9)	-177003.0	NM_007670	12579.0	Mm.423094	NM_007670	ENSMUSG00000073802	Cdkn2b	AV083695|INK4b|MTS2|p15|p15(INK4b)|p15INK4b	cyclin dependent kinase inhibitor 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-91413319-4	chr1	91413223	91413423	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019479)	promoter-TSS (NM_019479)	-101.0	NM_001360899	55927.0	Mm.280029	NM_019479	ENSMUSG00000067071	Hes6	AI326893|bHLHb41	hairy and enhancer of split 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-65089213-4	chr1	65089114	65089314	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6924.0	NM_144761	12965.0	Mm.440053	NM_144761	ENSMUSG00000073658	Crygb	Cryg-3|DGcry-3|Nop	crystallin, gamma B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96563248-2	chr3	96563148	96563348	+	669.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_040409, intron 1 of 3)	intron (NR_040409, intron 1 of 3)	3553.0	NR_040409	100038464.0	Mm.475126	NR_040409	ENSMUSG00000074398	Gm15441	-	predicted gene 15441	ncRNA	1.00473680344277	0.583723298650105	0.786809119186682	0.561124903645125	1.33002513426733	0.586543921168326	1.82208879011605	0.937156654411057	2.3003849211234	0.140837037171966	0.585503385997659
Merged-chr1-43805640-2	chr1	43805540	43805740	+	715.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_026430, exon 3 of 15)	exon (NM_026430, exon 3 of 15)	22068.0	NM_026430	67883.0	Mm.387202	NM_026430	ENSMUSG00000057363	Uxs1	1600025I13Rik|AI451869|AI649125|AW550562	UDP-glucuronate decarboxylase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-131555863-2	chr3	131555763	131555963	+	585.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-8905.0	NM_001289479	23971.0	Mm.244912	NM_011863	ENSMUSG00000028032	Papss1	AI325286|Asapk|SK1	3'-phosphoadenosine 5'-phosphosulfate synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19665484-4	chr7	19665397	19665597	+	921.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019649)	promoter-TSS (NM_019649)	-467.0	NM_019649	56457.0	Mm.290960	NM_019649	ENSMUSG00000002981	Clptm1	HS9|N14	cleft lip and palate associated transmembrane protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-75711752-2	chr10	75711652	75711852	+	595.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172549, intron 26 of 36)	intron (NM_172549, intron 26 of 36)	52605.0	NM_172549	104248.0	Mm.257404	NM_172549	ENSMUSG00000020196	Cabin1	A330070M20Rik|Cain|Ppp3in	calcineurin binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-101844231-4	chr13	101844125	101844325	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-76008.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95356799-2	chr3	95356703	95356903	+	775.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163642, intron 1 of 21)	intron (NM_001163642, intron 1 of 21)	399.0	NM_001163641	84505.0	Mm.490259	NM_018877	ENSMUSG00000015697	Setdb1	AU022152|ESET|KMT1E|mKIAA0067	SET domain, bifurcated 1	protein-coding	0.823431750053453	-0.0504707662963573	0.544351173135424	0.114817374136772	-0.0677917666501268	-0.0491166838389137	-0.0551640537212548	-0.0603466990471051	-4.05332486100723	0.0645000846904489	1
Merged-chr18-20751188-2	chr18	20751088	20751288	+	612.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4784.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-14703631-3	chr14	14703502	14703702	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360513, intron 1 of 25)	CpG	577.0	NM_001360509	218756.0	Mm.258893	NM_001033270	ENSMUSG00000021733	Slc4a7	E430014N10Rik|NBC3|NBCn1|NBCn1-G|Tg(Thy1-SNCA)12Mjff	solute carrier family 4, sodium bicarbonate cotransporter, member 7	protein-coding	3.00851628708549	3.77317005670589	1.94729412485922	3.55254269658619	2.62668653004216	3.7305593933751	2.98521712176296	3.69358717298212	0.162753409368198	0.811010802190803	0.998431161219273
Merged-chr3-69316738-4	chr3	69316619	69316819	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178726)	promoter-TSS (NM_178726)	-199.0	NM_178726	242083.0	Mm.40577	NM_178726	ENSMUSG00000027784	Ppm1l	3222401G13|5930404J21Rik|AI481720|AW045850|PP2C|PP2Cepsilon|Pp2ce|Ppp2ce|mKIAA4175	protein phosphatase 1 (formerly 2C)-like	protein-coding	6.06563724954005	6.3427000315651	4.90236587399183	6.34410940979838	6.17616627754802	6.22549063818727	4.89288570429117	6.46633050835128	0.0383535311750154	0.91036980506737	0.998431161219273
Merged-chr15-58416056-5	chr15	58415946	58416146	+	869.900024	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145959, intron 1 of 23)	intron (NM_145959, intron 1 of 23)	578.0	NM_145959	210998.0	Mm.3224	NM_145959	ENSMUSG00000037119	Fam91a1	AV220772|BC033609|D15Ertd621e|SKIN|mKIAA0493	family with sequence similarity 91, member A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-46098961-4	chr9	46098850	46099050	+	938.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027498, intron 1 of 24)	intron (NM_027498, intron 1 of 24)	86130.0	NM_027498	70661.0	Mm.219459	NM_027498	ENSMUSG00000034135	Sik3	5730525O22Rik|9030204A07Rik|AI447252|AI846254|AI849445|Qsk|SIK-3|mKIAA0999	SIK family kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-126746635-3	chr3	126746549	126746749	+	791.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr	intron (NM_001025438, intron 4 of 18)	intron (NM_001025438, intron 4 of 18)	149698.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	2.49716849287799	3.15023383601769	3.04197510786704	2.20725949930732	2.82222095223668	1.31764806629006	1.56014336372206	1.24062230167728	-1.7301310180786	0.0791918167754236	0.428121095376178
Merged-chr2-174329981-4	chr2	174329831	174330031	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001077510)	promoter-TSS (NM_001077510)	-139.0	NM_201616	14683.0	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97396291-3	chr6	97396172	97396372	+	896.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001346637, exon 5 of 23)	exon (NM_001346637, exon 5 of 23)	63014.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-11909329-4	chr16	11909233	11909433	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146067)	promoter-TSS (NM_146067)	90.0	NM_146067	223978.0	Mm.86360	NM_146067	ENSMUSG00000065979	Cpped1	C530044N13Rik	calcineurin-like phosphoesterase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-126260164-4	chr4	126260067	126260267	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2238.0	NM_013718	27096.0	Mm.8392	NM_013718	ENSMUSG00000028847	Trappc3	1110058K12Rik|AI835942|AU019197|Bet3	trafficking protein particle complex 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-58171657-4	chr11	58171611	58171811	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175001)	promoter-TSS (NM_175001)	57.0	NM_175001	216767.0	Mm.259907	NM_175001	ENSMUSG00000020514	Mrpl22	E030011D16Rik|HSPC158|MRP-L25|Rpml25	mitochondrial ribosomal protein L22	protein-coding	5.33413671649892	4.95390099547687	5.4236572935674	5.26767435283548	4.95616119844164	4.30888746103908	4.54132443503027	5.07782897841748	-0.586051489637062	0.0734530100746011	0.409647915188285
Merged-chr6-124297505-4	chr6	124297390	124297590	+	897.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	BGLII_A|LTR|ERVK	-7161.0	NM_001170395	93671.0	Mm.37426	NM_053094	ENSMUSG00000008845	Cd163	CD163v2|CD163v3	CD163 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-58452419-4	chr13	58452332	58452532	+	940.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49089.0	NM_001301341	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-146832993-4	chr5	146832928	146833128	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_019647, exon 1 of 6)	5' UTR (NM_019647, exon 1 of 6)	138.0	NM_019647	19933.0	Mm.316592	NM_019647	ENSMUSG00000041453	Rpl21	8430440E03Rik|L21	ribosomal protein L21	protein-coding	5.30913956997938	5.63085399808573	5.63235930330166	4.68886231959958	6.10909336552086	5.05530546941979	6.12134628907726	5.24116053643323	0.410974345582709	0.216673982577826	0.707538695710375
Merged-chr19-42537847-1	chr19	42537747	42537947	+	618.0	f0_c57.idr	intron (NM_177464, intron 1 of 6)	intron (NM_177464, intron 1 of 6)	19042.0	NM_177464	52013.0	Mm.254169	NM_177464	ENSMUSG00000025184	R3hcc1l	1700036B12Rik|AI450607|C10orf28|D19Ertd386e|GIDRP86|Gidrp88	R3H domain and coiled-coil containing 1 like	protein-coding	0.942202110246172	1.03625151186953	1.45278674482922	0.78931721722725	1.53171166441766	0.81636944472568	1.46584174224926	1.79252974715937	1.48974882971298	0.277622087770318	0.781414562652863
Merged-chr9-66907721-3	chr9	66907623	66907823	+	975.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	11982.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-65786341-2	chr11	65786241	65786441	+	756.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001316368, intron 1 of 10)	intron (NM_001316368, intron 1 of 10)	2018.0	NM_009157	26398.0	Mm.412922	NM_009157	ENSMUSG00000033352	Map2k4	JNKK1|MEK4|MKK4|PRKMK4|Sek1|Serk1	mitogen-activated protein kinase kinase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34642854-5	chr17	34642703	34642903	+	786.991638	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2080.0	NM_019873	56299.0	Mm.10025	NM_019873	ENSMUSG00000033739	Fkbpl	DIR1|NG7|Ppiase-X|Wisp39	FK506 binding protein-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69261455-4	chr11	69261376	69261576	+	967.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24454.0	NM_008192	14919.0	Mm.291816	NM_008192	ENSMUSG00000020890	Gucy2e	GC-E|GC1|ROS-GC1	guanylate cyclase 2e	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-113759391-4	chr7	113759288	113759488	+	768.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6610.0	NM_145584	233744.0	Mm.334160	NM_145584	ENSMUSG00000038156	Spon1	AI666765|AW455831|BC020531|D330035F22Rik|FSP	spondin 1, (f-spondin) extracellular matrix protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-102392590-4	chr15	102392501	102392701	+	804.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-13715.0	NM_013672	20683.0	Mm.4618	NM_013672	ENSMUSG00000001280	Sp1	1110003E12Rik|AA450830|AI845540|Sp1-1	trans-acting transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-84603668-2	chr2	84603568	84603768	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_007615, exon 19 of 20)	exon (NM_007615, exon 19 of 20)	45812.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-64794880-4	chr14	64794692	64794892	+	746.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081177, intron 37 of 39)	intron (NM_001081177, intron 37 of 39)	142261.0	NM_001081177	16554.0	Mm.23611	NM_001081177	ENSMUSG00000060012	Kif13b	5330429L19Rik|6030414C01|AI429803|C130021D12Rik|GAKIN	kinesin family member 13B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-52703461-2	chr6	52703361	52703561	+	658.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10268.0	NM_025816	52440.0	Mm.389757	NM_025816	ENSMUSG00000004535	Tax1bp1	1200003J11Rik|1700069J21Rik|AA930106|D6Ertd404e|D6Ertd772e|T6bp|TXBP151	Tax1 (human T cell leukemia virus type I) binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-11705892-4	chr16	11705784	11705984	+	921.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028964, intron 18 of 20)	intron (NM_028964, intron 18 of 20)	-73818.0	NR_126430	73761.0	Mm.39183	NR_126430		4833415N18Rik	-	RIKEN cDNA 4833415N18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-27413486-3	chr16	27413395	27413595	+	619.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025615, intron 4 of 9)	intron (NM_001025615, intron 4 of 9)	24539.0	NM_001289436	67501.0	Mm.258985	NM_026202	ENSMUSG00000038127	Ccdc50	C3orf6	coiled-coil domain containing 50	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-24903666-2	chr7	24903566	24903766	+	925.6666869999999	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001130152)	promoter-TSS (NM_001130152)	680.0	NM_001130151	16801.0	Mm.3181	NM_008488	ENSMUSG00000040940	Arhgef1	Lbcl2|Lsc	Rho guanine nucleotide exchange factor (GEF) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-97789375-2	chr7	97789224	97789424	+	762.900024	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357364, intron 1 of 14)	CpG	783.0	NM_001357364	18479.0	Mm.260227	NM_011035	ENSMUSG00000030774	Pak1	AW045634|PAK-1|Paka	p21 (RAC1) activated kinase 1	protein-coding	3.42653647194938	3.06932946307604	2.11669519687971	3.42671268939876	2.42703960001427	2.57765435374984	3.26130578310752	2.99325335312625	-0.456106659852906	0.51376418854597	0.9463431014646
Merged-chr18-53232599-4	chr18	53232528	53232728	+	886.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MERV1_I-int|LTR|ERV1	-13034.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-32960757-2	chr14	32960657	32960857	+	999.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001146022, exon 58 of 59)	exon (NM_001146022, exon 58 of 59)	-30625.0	NM_001146021	67580.0	Mm.46115	NM_026253	ENSMUSG00000041673	Lrrc18	4930442L21Rik|MTLR1	leucine rich repeat containing 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-86687567-2	chr11	86687467	86687667	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001098810, intron 1 of 1)	intron (NM_001098810, intron 1 of 1)	3486.0	NM_001098810	217057.0	Mm.24868	NM_175004	ENSMUSG00000072582	Ptrh2	A230072I16Rik|Bit1|CGI-147	peptidyl-tRNA hydrolase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-59208730-1	chr11	59208630	59208830	+	1000.0	f0_c57.idr	intron (NM_024210, intron 1 of 6)	intron (NM_024210, intron 1 of 6)	369.0	NM_024210	67862.0	Mm.358708	NM_024210	ENSMUSG00000020441	2310033P09Rik	Mmtag2	RIKEN cDNA 2310033P09 gene	protein-coding	3.17477920501797	3.03126464776953	2.92344333998779	3.4306813389676	3.82832246922294	4.35077737470328	2.65641033423484	3.84841148953792	0.985199041176521	0.092443303676791	0.470092146793074
Merged-chr6-129209979-2	chr6	129209879	129210079	+	780.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14|LTR|ERV1	28066.0	NR_040265	76432.0	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129058986-6	chr4	129058879	129059079	+	872.861084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029219, intron 1 of 8)	intron (NM_029219, intron 1 of 8)	708.0	NM_029219	75234.0	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-78830170-2	chr18	78830082	78830282	+	711.5	f0_balb.idr|f1_c57bl6.idr	intron (NM_053099, intron 4 of 5)	Tigger7|DNA|TcMar-Tigger	-233232.0	NM_207651	27411.0	Mm.44158	NM_030683	ENSMUSG00000024552	Slc14a2	UT-A1|UT-A3	solute carrier family 14 (urea transporter), member 2	protein-coding	1.81960764113141	2.29558807676666	1.21947390433465	2.42774056583247	1.55278140498091	2.51991911978575	1.98871408096516	1.7863865663766	-0.0372916377048896	0.970702088389069	0.998431161219273
Merged-chr12-70472864-4	chr12	70472753	70472953	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_037248, intron 2 of 4)	L1M2|LINE|L1	19699.0	NM_028339	72736.0	Mm.204670	NM_028339	ENSMUSG00000021072	Tmx1	2810425A04Rik|AI465319|Txndc1	thioredoxin-related transmembrane protein 1	protein-coding	3.43967137103354	4.106532470365	2.67825078646804	3.92867648311353	4.09379122507682	3.342889910187	3.42873145546396	3.22838205615208	-0.0946814347154993	0.868233005693515	0.998431161219273
Merged-chr11-6508673-4	chr11	6508583	6508783	+	989.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178440, intron 18 of 21)	MTD|LTR|ERVL-MaLR	12275.0	NM_178440	246177.0	Mm.239554	NM_178440	ENSMUSG00000020437	Myo1g	E430002D17Rik	myosin IG	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-9684228-4	chr9	9684129	9684329	+	806.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033359, intron 17 of 20)	intron (NM_001033359, intron 17 of 20)	-210202.0	NR_105745	102466147.0		NR_105745	ENSMUSG00000098408	Mir6237	Gm27411|mmu-mir-6237	microRNA 6237	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-94565418-2	chr11	94565318	94565518	+	637.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_007689, exon 1 of 4)	exon (NM_007689, exon 1 of 4)	371.0	NM_007689	12643.0	Mm.440523	NM_007689	ENSMUSG00000039084	Chad	SLRR4A	chondroadherin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6935605-2	chr19	6935505	6935705	+	546.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-1090.0	NM_008431	16528.0	Mm.12894	NM_008431	ENSMUSG00000024957	Kcnk4	Catsperz|MLZ-622|TRAAK|TRAAKt|Tex40	potassium channel, subfamily K, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-85024563-4	chr8	85024468	85024668	+	905.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019652, intron 1 of 6)	intron (NM_019652, intron 1 of 6)	719.0	NM_001357203	56495.0	Mm.41475	NM_019652	ENSMUSG00000052456	Asna1	1810048H22Rik|ArsA	arsA arsenite transporter, ATP-binding, homolog 1 (bacterial)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4405555-1	chr16	4405455	4405655	+	595.0	f0_balb.idr	intron (NM_009624, intron 2 of 10)	intron (NM_009624, intron 2 of 10)	14943.0	NM_001291910	11515.0	Mm.439750	NM_009624	ENSMUSG00000005580	Adcy9	AC9|ACtp10|AW125421|D16Wsu65e|mKIAA0520	adenylate cyclase 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-127293062-4	chr3	127292969	127293169	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001327938, intron 1 of 47)	intron (NM_001327938, intron 1 of 47)	115989.0	NM_001327939	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	4.75110622731684	4.74311469930581	4.46618588912513	4.14811473290188	3.73818379281829	3.88108038530176	2.42562138267387	4.22223522027371	-1.10916601097487	0.0220178073080868	0.191150254762971
Merged-chr1-170806369-4	chr1	170806276	170806476	+	972.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081304, intron 9 of 15)	intron (NM_001081304, intron 9 of 15)	61395.0	NM_001081304	226641.0	Mm.377046	NM_001081304	ENSMUSG00000026663	Atf6	9130025P16Rik|9630036G24|AA789574|Atf6alpha|ESTM49	activating transcription factor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128701922-4	chr2	128701857	128702057	+	903.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 1 of 18)	intron (NM_008587, intron 1 of 18)	3042.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-102832853-1	chr2	102832753	102832953	+	556.0	f1_c57bl6.idr	intron (NM_001177787, intron 5 of 10)	intron (NM_001177787, intron 5 of 10)	68812.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	0.785426117572444	0.370068934326212	0.364617670730886	1.00752355859275	0.354599567092251	0.549121797982761	0.365815786075331	0.940615830103767	-0.563102172419688	0.767284563293133	1
Merged-chr1-170849834-5	chr1	170849573	170849773	+	763.966675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081304, intron 3 of 15)	intron (NM_001081304, intron 3 of 15)	18098.0	NM_001081304	226641.0	Mm.377046	NM_001081304	ENSMUSG00000026663	Atf6	9130025P16Rik|9630036G24|AA789574|Atf6alpha|ESTM49	activating transcription factor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-17867235-4	chr17	17867121	17867321	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12033.0	NM_008215	15116.0	Mm.255701	NM_008215	ENSMUSG00000003665	Has1	HAS	hyaluronan synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-83464697-4	chr15	83464582	83464782	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159509)	promoter-TSS (NM_001159509)	-76.0	NM_001358643	23970.0	Mm.23978	NM_011862	ENSMUSG00000016664	Pacsin2	AI197433	protein kinase C and casein kinase substrate in neurons 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-62859413-4	chr13	62859329	62859529	+	809.604187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	-1059.0	NM_007994	14120.0	Mm.391871	NM_007994	ENSMUSG00000021456	Fbp2	Fbp-1|Fbp1|Rae-30	fructose bisphosphatase 2	protein-coding	0.753475580878733	1.80023917527421	1.44314532610595	0.784682471045188	0.9816470465546	2.40892149873171	0.807685699237003	1.98958538994288	1.30733013323486	0.340079205050773	0.840830533493442
Merged-chr6-84584502-2	chr6	84584402	84584602	+	928.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177713, intron 2 of 6)	CpG-12217	9308.0	NM_175475	232174.0	Mm.255246	NM_175475	ENSMUSG00000063415	Cyp26b1	CP26|P450RAI-2	cytochrome P450, family 26, subfamily b, polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-20012225-2	chr3	20012125	20012325	+	566.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_080634, intron 11 of 16)	intron (NM_080634, intron 11 of 16)	23085.0	NM_001146324	12807.0	Mm.291533	NM_080634	ENSMUSG00000027615	Hps3	coa	HPS3, biogenesis of lysosomal organelles complex 2 subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-123259288-2	chr6	123259188	123259388	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-2819.0	NM_001163161	17474.0	Mm.441101	NM_010819	ENSMUSG00000030144	Clec4d	Clecsf8|Mpcl|mcl	C-type lectin domain family 4, member d	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-102900944-3	chr11	102900841	102901041	+	913.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3741.0	NM_010277	14580.0	Mm.1239	NM_010277	ENSMUSG00000020932	Gfap	AI836096	glial fibrillary acidic protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-43877100-2	chr5	43876984	43877184	+	791.0	f0_balb.idr|f0_c57.idr	intron (NM_007646, intron 1 of 7)	intron (NM_007646, intron 1 of 7)	8275.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-102774927-2	chr2	102774827	102775027	+	754.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077514, intron 9 of 10)	intron (NM_001077514, intron 9 of 10)	-28167.0	NR_153853	102637542.0	Mm.371582	NR_153852		Gm13872	-	predicted gene 13872	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-3037988-3	chr9	3037877	3038077	+	899.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_039546)	TTS (NR_039546)	766.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-89371112-1	chr7	89371012	89371212	+	553.0	f0_balb.idr	intron (NM_001360746, intron 1 of 14)	intron (NM_001360746, intron 1 of 14)	-32325.0	NM_001360745	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-107954458-4	chr13	107954355	107954555	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64391.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	4.45923935152934	4.08644669217888	4.71657492153524	5.16561521457876	5.00275616033495	5.18345188875919	4.55627810817324	4.78413228604162	0.282675743399273	0.443196234186597	0.911848228504708
Merged-chr7-99151991-2	chr7	99151891	99152091	+	990.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10847.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81292834-4	chr10	81292733	81292933	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008844)	promoter-TSS (NM_008844)	-130.0	NM_008844	18717.0	Mm.24222	NM_008844	ENSMUSG00000034902	Pip5k1c	AI115456|AI835305|Pip5kIgamma	phosphatidylinositol-4-phosphate 5-kinase, type 1 gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-49204133-4	chr11	49204036	49204236	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024846, intron 1 of 4)	intron (NM_001024846, intron 1 of 4)	636.0	NM_009562	22720.0	Mm.16650	NM_009562	ENSMUSG00000046311	Zfp62	-	zinc finger protein 62	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-20980540-2	chr9	20980440	20980640	+	735.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4|SINE|ID	-3747.0	NM_010333	14739.0	Mm.46493	NM_010333	ENSMUSG00000043895	S1pr2	1100001A16Rik|Edg5|Gpcr13|H218|LPb2|S1P2	sphingosine-1-phosphate receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-142393838-1	chr3	142393738	142393938	+	549.0	f0_balb.idr	intron (NM_001190854, intron 1 of 12)	intron (NM_001190854, intron 1 of 12)	1858.0	NM_001190853	56376.0	Mm.117709	NM_019808	ENSMUSG00000028273	Pdlim5	1110001A05Rik|AI987914|C87059|Enh|Enh1|Enh2|Enh3|LIM	PDZ and LIM domain 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-37555772-4	chr1	37555692	37555892	+	871.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14776.0	NM_173870	269181.0	Mm.25861	NM_173870	ENSMUSG00000026110	Mgat4a	9530018I07Rik|GnT-IVa|glcNAc-T-IVa	mannoside acetylglucosaminyltransferase 4, isoenzyme A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-54021462-5	chr6	54021406	54021606	+	847.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18426.0	NM_001163640	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	2.32957777518444	1.47692759338595	3.00899946105724	3.36156914628247	2.103233340443	2.36459832005976	2.55200272425775	2.58209871747362	-0.654343518518426	0.441736909308169	0.910912463366408
Merged-chr4-59529486-3	chr4	59529391	59529591	+	651.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178164, intron 1 of 13)	intron (NM_178164, intron 1 of 13)	19873.0	NM_178164	230257.0	Mm.331640	NM_144904	ENSMUSG00000028382	Ptbp3	5830471K22Rik|AA407443|AI462022|AW107884|C86549|Rod1	polypyrimidine tract binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-51907380-3	chr14	51907277	51907477	+	735.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360266, intron 11 of 15)	intron (NM_001360266, intron 11 of 15)	4612.0	NM_001360269	29811.0	Mm.26722	NM_013864	ENSMUSG00000004558	Ndrg2	AI182517|AU040374|Ndr2|SYLD	N-myc downstream regulated gene 2	protein-coding	-2.05752322593321	-2.15521190974092	-2.16307242109104	-2.16952927915413	-2.17938029103484	-2.15350850414045	-2.16129297361887	-2.16837350464794	-0.683654500252594	0.846597994014493	1
Merged-chr13-96586503-3	chr13	96586404	96586604	+	757.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023420, intron 3 of 17)	ORR1D1|LTR|ERVL-MaLR	43769.0	NM_023420	68018.0	Mm.24125	NM_023420	ENSMUSG00000021669	Col4a3bp	2810404O15Rik|9230101K08Rik|AU016711|CERT|GPBP	collagen, type IV, alpha 3 (Goodpasture antigen) binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133928174-1	chr4	133928074	133928274	+	600.0	f1_balb.idr	Intergenic	RLTR16|LTR|ERVK	39817.0	NM_016957	15331.0	Mm.319660	NM_016957	ENSMUSG00000003038	Hmgn2	HMG-17|Hmg17	high mobility group nucleosomal binding domain 2	protein-coding	0.246104860568161	0.108902923563239	0.296870341249232	0.0960635101233744	0.0880675080310186	1.00385033553072	0.103276226662783	0.788846006121916	2.65523145343585	0.193398979525875	1
Merged-chr10-120227787-3	chr10	120227672	120227872	+	880.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025431, intron 1 of 2)	intron (NM_025431, intron 1 of 2)	712.0	NM_025431	66225.0	Mm.291755	NM_025431	ENSMUSG00000020224	Llph	1190005P17Rik	LLP homolog, long-term synaptic facilitation (Aplysia)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126528327-2	chr7	126528227	126528427	+	990.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-24890.0	NM_183020	233871.0	Mm.231450	NM_183020	ENSMUSG00000032637	Atxn2l	A2D|A2LG|A2RP|A2lp|Atxnl2	ataxin 2-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-47507644-8	chr19	47507569	47507769	+	810.791626	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175360, intron 9 of 9)	intron (NM_175360, intron 9 of 9)	-5313.0	NR_045322	100503104.0	Mm.442735	NR_045322	ENSMUSG00000097990	Gm19557	-	predicted gene, 19557	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-8348253-4	chr12	8348128	8348328	+	831.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34795.0	NM_021429	58240.0	Mm.309954	NM_021429	ENSMUSG00000020605	Hs1bp3	-	HCLS1 binding protein 3	protein-coding	0.73545143881255	1.33765261646568	0.763286803000702	1.10789114966839	0.912631246959224	1.34892856125495	1.64433938693032	1.58369476054444	1.66566559241661	0.231934061468477	0.726565240078011
Merged-chr14-121331588-2	chr14	121331489	121331689	+	900.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_145465, intron 2 of 10)	intron (NM_145465, intron 2 of 10)	47641.0	NM_145465	223255.0	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	0.152636699580936	-0.152757204317902	-0.00746551622671668	-0.158554887719182	0.159911959588772	-0.15201012882638	0.236985913172434	-0.158118366304711	0.706844187197551	0.755141257918588	1
Merged-chr13-67194522-4	chr13	67194421	67194621	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001048204)	promoter-TSS (NM_001048204)	15.0	NM_001048204	218311.0	Mm.82396	NM_183156	ENSMUSG00000051037	Zfp455	3732412P20Rik|Rslcan-10	zinc finger protein 455	protein-coding	4.85168285240651	4.64017768183098	4.32782471357657	5.52969743827059	4.76115141555074	4.61824247436914	4.10032978954737	3.89991367480643	-0.650185563163962	0.111367440273255	0.52194787046817
Merged-chr1-55613112-4	chr1	55613007	55613207	+	871.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114663, intron 1 of 5)	intron (NM_001114663, intron 1 of 5)	207161.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3721664-3	chr4	3721556	3721756	+	971.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 1 of 12)	L1MC1|LINE|L1	6692.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	2.54560113657125	1.67205758479031	3.27887620653673	3.10310008329296	3.2641215008861	3.64681239877129	2.79513598340073	3.61198424819942	0.982629090985635	0.159773255077163	0.619354256974287
Merged-chr7-46616395-2	chr7	46616295	46616495	+	659.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013789, intron 7 of 10)	intron (NM_013789, intron 7 of 10)	23412.0	NM_013789	27414.0	Mm.76659	NM_013789	ENSMUSG00000030839	Sergef	DelGEF|Gef|Gnef|Gnefr	secretion regulating guanine nucleotide exchange factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76080942-4	chr15	76080854	76081054	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133691)	promoter-TSS (NM_133691)	-8.0	NM_028364	67959.0	Mm.29965	NM_028364	ENSMUSG00000002524	Puf60	2410104I19Rik|2810454F19Rik|SIAHBP1	poly-U binding splicing factor 60	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-37011867-4	chr8	37011776	37011976	+	937.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_126063, intron 1 of 2)	intron (NR_126063, intron 1 of 2)	12362.0	NR_126063	414128.0	Mm.450976	NR_126063	ENSMUSG00000110242	G630064G18Rik	-	RIKEN cDNA G630064G18 gene	ncRNA	0.688869723948142	1.52173732385924	0.913843635070277	1.30372003785594	1.1276357714089	0.728128190193859	0.920148877874105	1.60132390107581	-0.0263182804113572	0.985427998866869	0.998431161219273
Merged-chr10-128669023-2	chr10	128668923	128669123	+	750.625	f1_balb.idr|f1_c57bl6.idr	TTS (NM_173733)	TTS (NM_173733)	4895.0	NM_173733	211389.0	Mm.23352	NM_173733	ENSMUSG00000049858	Suox	SO	sulfite oxidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-8246428-4	chr3	8246318	8246518	+	948.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	216680.0	NR_033512	620966.0	Mm.301719	NR_033512		Gm6194	1700003N22Rik|EG620966	transmembrane protein 189 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70860786-4	chr14	70860697	70860897	+	996.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045939, intron 2 of 3)	MTD|LTR|ERVL-MaLR	7864.0	NR_045939	73648.0	Mm.410851	NR_045939	ENSMUSG00000099528	2410012E07Rik	-	RIKEN cDNA 2410012E07 gene	ncRNA	4.55210611001001	4.13665791383352	4.73432488093072	4.22249872028004	6.07557245053343	5.7939569623897	6.08662041662418	5.99356788279269	1.80180046647834	7.87821897375867e-10	1.31281765621051e-07
Merged-chr2-52419503-1	chr2	52419403	52419603	+	556.0	f0_balb.idr	intron (NM_182994, intron 1 of 5)	intron (NM_182994, intron 1 of 5)	5371.0	NM_182994	75423.0	Mm.314378	NM_182994	ENSMUSG00000036093	Arl5a	2410015N24Rik|2810410P22Rik|AA408731|AW610751|Arl5|T25534	ADP-ribosylation factor-like 5A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33062414-4	chr16	33062300	33062500	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172823)	promoter-TSS (NM_172823)	-121.0	NM_172823	239833.0	Mm.131951	NM_172823	ENSMUSG00000022802	Lmln	5330415H22Rik|AI465495	leishmanolysin-like (metallopeptidase M8 family)	protein-coding	-1.17367364971587	-1.14665061133654	-1.15856004380685	-1.16834280623128	-1.17310571790619	-1.14406978763884	-0.42938571406771	-1.16659169643457	2.89727187181404	0.396361616615464	1
Merged-chr19-14587410-3	chr19	14587296	14587496	+	940.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302951, intron 4 of 19)	intron (NM_001302951, intron 4 of 19)	9817.0	NM_001302951	21888.0	Mm.103638	NM_011600	ENSMUSG00000024642	Tle4	5730411M05Rik|AA792082|Bce-1|Bce1|ESTM13|ESTM14|Grg4|X83332|X83333|grg-4	transducin-like enhancer of split 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-119029469-4	chr2	119029427	119029627	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199310)	promoter-TSS (NM_199310)	-134.0	NM_199310	269336.0	Mm.292465	NM_199310	ENSMUSG00000039983	Ccdc32	Gm631	coiled-coil domain containing 32	protein-coding	6.47056671468249	5.38262941916824	6.42773478841604	6.17515779706238	6.86656509574085	6.19810835622961	6.74689813462182	6.32868794520095	0.414200960480043	0.104721732414936	0.50473407023878
Merged-chr14-55643276-6	chr14	55643214	55643414	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360063)	promoter-TSS (NM_001360063)	57.0	NM_001360063	74140.0	Mm.132857	NM_028780	ENSMUSG00000002320	Tm9sf1	1200014D02Rik|AI893436|MP70	transmembrane 9 superfamily member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46314813-2	chr19	46314713	46314913	+	710.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028627, intron 12 of 17)	intron (NM_028627, intron 12 of 17)	8883.0	NM_001177370	18034.0	Mm.102365	NM_019408	ENSMUSG00000025225	Nfkb2	NF-kappaB2|lyt|p49|p49/p100|p50B|p52	nuclear factor of kappa light polypeptide gene enhancer in B cells 2, p49/p100	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101976764-4	chr15	101976663	101976863	+	800.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22476.0	NM_212487	332131.0	Mm.325105	NM_212487	ENSMUSG00000050463	Krt78	2310030B04Rik|Kb40	keratin 78	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-40343949-3	chr9	40343844	40344044	+	684.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_040728)	TTS (NR_040728)	2301.0	NM_001357623	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-42367802-4	chr13	42367697	42367897	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	66321.0	NM_010104	13614.0	Mm.14543	NM_010104	ENSMUSG00000021367	Edn1	ET-1|PPET1|preproET	endothelin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128696432-4	chr10	128696330	128696530	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177411)	promoter-TSS (NM_177411)	-162.0	NM_177411	19344.0	Mm.12815	NM_011229	ENSMUSG00000000711	Rab5b	C030027M18Rik	RAB5B, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-80636445-3	chr1	80636343	80636543	+	939.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175291, intron 2 of 55)	intron (NM_175291, intron 2 of 55)	28909.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133497216-1	chr4	133497116	133497316	+	731.0	f1_balb.idr	intron (NM_001081156, intron 1 of 1)	intron (NM_001081156, intron 1 of 1)	1334.0	NM_001081156	69539.0	Mm.151594	NM_001081156	ENSMUSG00000056596	Trnp1	2300002D11Rik|Trnp	TMF1-regulated nuclear protein 1	protein-coding	0.0481436734689775	1.02457090156262	0.0663849196742287	0.0595992430260716	0.0498634154451225	1.03956422299189	0.0683095695350547	0.263978170742551	0.226501727586282	0.913895804984541	1
Merged-chr3-109478462-4	chr3	109478355	109478555	+	937.037476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020505, intron 2 of 26)	intron (NM_020505, intron 2 of 26)	-95552.0	NM_146139	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	-0.944014261241714	-0.43664531059229	-0.938078458010373	-0.940312000773382	-0.94346398652606	-0.925918997699352	-0.600657589095425	-0.939921983679466	-0.675209766516356	0.829065892576575	1
Merged-chr7-100950683-4	chr7	100950589	100950789	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183168, intron 1 of 2)	L2|LINE|L2	13677.0	NM_183168	233571.0	Mm.235193	NM_183168	ENSMUSG00000048779	P2ry6	2010204J23Rik|P2Y6	pyrimidinergic receptor P2Y, G-protein coupled, 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-78701279-3	chr14	78701149	78701349	+	995.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081336, intron 2 of 29)	intron (NM_001081336, intron 2 of 29)	31480.0	NM_001081336	380921.0	Mm.89591	NM_001081336	ENSMUSG00000034731	Dgkh	5930402B05Rik|D130015C16|DGK	diacylglycerol kinase, eta	protein-coding	-0.517416271925469	-0.326074082129362	-0.510739776484154	-0.513258731782243	0.0174421175570745	-0.506716630160724	-0.340954567036892	-0.357362538704356	2.3770072455121	0.334865657889351	1
Merged-chr4-82619747-3	chr4	82619655	82619855	+	902.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	111766.0	NR_137202	102635783.0	Mm.41666	NR_137202		Gm11266	-	predicted gene 11266	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-70838695-4	chr9	70838574	70838774	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001324473, intron 1 of 8)	intron (NM_001324473, intron 1 of 8)	96134.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-71331187-2	chr2	71331087	71331287	+	769.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_172436, intron 4 of 17)	intron (NM_172436, intron 4 of 17)	36367.0	NM_172436	78830.0	Mm.30928	NM_172436	ENSMUSG00000027010	Slc25a12	2610002D09Rik|AI839531|B230107K20Rik|BB129864	solute carrier family 25 (mitochondrial carrier, Aralar), member 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-21962683-4	chr17	21962590	21962790	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199048)	promoter-TSS (NM_001199048)	131.0	NM_001025373	74670.0	Mm.26540	NM_001025373	ENSMUSG00000053347	Zfp943	4930432O21Rik	zinc finger prtoein 943	protein-coding	4.82937579721806	5.28025368493135	5.75986401912319	3.25147743789364	5.28977396852379	5.68610668719088	5.90214510948502	4.22626815123287	0.421546304788736	0.5392379174651	0.954403851908463
Merged-chr2-91972363-4	chr2	91972261	91972461	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER58B|DNA|hAT-Charlie	-8798.0	NM_138306	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-42147946-4	chr19	42147890	42148090	+	893.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_183195, exon 1 of 2)	exon (NM_183195, exon 1 of 2)	601.0	NM_183195	277010.0	Mm.206250	NM_183195	ENSMUSG00000044345	Marveld1	AI504298|Mrvldc1	MARVEL (membrane-associating) domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118216099-6	chr11	118216018	118216218	+	944.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	MTD|LTR|ERVL-MaLR	-3376.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-115777291-3	chr9	115777185	115777385	+	961.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-132170.0	NM_028638	73748.0	Mm.485018	NM_028638	ENSMUSG00000056880	Gadl1	1110027M19Rik|ADC|CSADC	glutamate decarboxylase-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-79861397-2	chr10	79861297	79861497	+	900.099976	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001170935, exon 9 of 9)	3' UTR (NM_001170935, exon 9 of 9)	-1190.0	NR_105875	102465549.0		NR_105875	ENSMUSG00000098562	Mir6910	Gm27763|mmu-mir-6910	microRNA 6910	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-31208420-4	chr6	31208318	31208518	+	974.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110469, intron 1 of 3)	intron (NR_110469, intron 1 of 3)	10056.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-28025148-4	chr15	28024988	28025188	+	942.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081302, intron 1 of 56)	CpG	760.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-83574449-3	chr9	83574348	83574548	+	778.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172507, intron 1 of 3)	intron (NM_172507, intron 1 of 3)	26110.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	-1.5061220274826	-1.47360709383584	-1.48343987814663	-1.49151681994238	-1.50383953926072	-1.47147628845725	-1.0170701920923	-1.49007105122263	2.15652851593596	0.535359572134045	1
Merged-chr4-126467907-4	chr4	126467801	126468001	+	948.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153403, intron 1 of 18)	intron (NM_153403, intron 1 of 18)	682.0	NM_001317174	236511.0	Mm.30800	NM_153403	ENSMUSG00000041530	Ago1	Eif2c1	argonaute RISC catalytic subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-186722108-4	chr1	186721977	186722177	+	929.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026041, intron 4 of 4)	intron (NM_026041, intron 4 of 4)	-16088.0	NM_001329107	21808.0	Mm.18213	NM_009367	ENSMUSG00000039239	Tgfb2	BB105277|Tgf-beta2|Tgfb-2	transforming growth factor, beta 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70280663-4	chr11	70280579	70280779	+	860.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25309.0	NM_007440	11684.0	Mm.12286	NM_007440	ENSMUSG00000000320	Alox12	9930022G08Rik|Alox12p|P-12LO	arachidonate 12-lipoxygenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-164940574-4	chr2	164940488	164940688	+	884.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7631.0	NM_013599	17395.0	Mm.4406	NM_013599	ENSMUSG00000017737	Mmp9	AW743869|B/MMP9|Clg4b|Gel B|MMP-9|pro-MMP-9	matrix metallopeptidase 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-31290464-4	chr16	31290358	31290558	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-15181.0	NM_025800	66849.0	Mm.291593	NM_025800	ENSMUSG00000047714	Ppp1r2	0610025N14Rik|2310007G06Rik|4930440J04Rik|5430408E15Rik|D16Ertd248e|I-2|IPP-2	protein phosphatase 1, regulatory (inhibitor) subunit 2	protein-coding	4.59984791982738	4.80234155630216	3.84782353212359	5.05853240219518	4.59728912562514	5.30386621035505	4.59116293690925	4.45885145583628	0.15620492600914	0.692050589348932	0.997344206959699
Merged-chr11-31917880-2	chr11	31917780	31917980	+	872.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290676, intron 3 of 8)	MER44D|DNA|TcMar-Tigger	46940.0	NM_026252	67579.0	Mm.339792	NM_026252	ENSMUSG00000020300	Cpeb4	Cpe-bp4|Cpeb-4|mCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding	0.300918150675734	0.326755605761343	0.318370381065689	0.311849402204796	1.23583864253076	0.870713492320939	0.518564283246623	0.900120487330729	4.46747640336995	0.0143238162184224	1
Merged-chr13-24297532-2	chr13	24297432	24297632	+	691.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16742.0	NM_026825	68732.0	Mm.211047	NM_026825	ENSMUSG00000021338	Carmil1	1110037D04Rik|AI425970|CARMIL|CARML1|D130057M20|Lrrc16|Lrrc16a	capping protein regulator and myosin 1 linker 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-20878297-4	chr9	20878197	20878397	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_145154, exon 2 of 6)	exon (NM_145154, exon 2 of 6)	1413.0	NM_145154	70726.0	Mm.34019	NM_145154	ENSMUSG00000038742	Angptl6	6330404E11Rik|AGF|ARP3|Arp5	angiopoietin-like 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-92389287-1	chr2	92389187	92389387	+	566.0	f0_balb.idr	intron (NM_011162, intron 2 of 11)	CpG	-1841.0	NR_105966	102466783.0		NR_105966	ENSMUSG00000099093	Mir7000	Gm27338|mmu-mir-7000	microRNA 7000	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-75823983-4	chr2	75823876	75824076	+	981.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8201.0	NM_172666	228061.0	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-61121531-3	chr18	61121394	61121594	+	870.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037859, intron 11 of 21)	intron (NM_001037859, intron 11 of 21)	4026.0	NR_105949	102466212.0		NR_105949	ENSMUSG00000098389	Mir6983	Gm27496|mmu-mir-6983	microRNA 6983	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-84235869-4	chr15	84235769	84235969	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133167, intron 1 of 12)	intron (NM_133167, intron 1 of 12)	3826.0	NM_133167	170736.0	Mm.323892	NM_133167	ENSMUSG00000022438	Parvb	AI595373|AW742462|D15Gsk1|affixin	parvin, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-75436834-4	chr10	75436794	75436994	+	839.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_133995, exon 8 of 10)	exon (NM_133995, exon 8 of 10)	-12616.0	NR_045841	71125.0	Mm.399516	NR_045841		4933407G14Rik	-	RIKEN cDNA 4933407G14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-147353344-1	chr6	147353244	147353444	+	714.0	f1_c57bl6.idr	Intergenic	ERVL-E-int|LTR|ERVL	-89331.0	NM_008970	19227.0	Mm.28440	NM_008970	ENSMUSG00000048776	Pthlh	PLP|PTH-like|Pthrp	parathyroid hormone-like peptide	protein-coding	0.106406069798947	-0.166150217938358	0.810927800302147	-0.176393923788563	0.113461868001885	-0.16485406517282	-0.170644583594641	-0.175610880643909	-2.40855502066749	0.300109788870192	1
Merged-chr7-127023714-2	chr7	127023614	127023814	+	566.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010772, intron 4 of 4)	intron (NM_010772, intron 4 of 4)	-2503.0	NM_001102563	69017.0	Mm.392047	NM_001102563	ENSMUSG00000045114	Prrt2	1500031I19Rik|AI195361|DSPB3	proline-rich transmembrane protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-51989790-4	chr14	51989700	51989900	+	885.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045728)	promoter-TSS (NR_045728)	-971.0	NR_045728	100502764.0	Mm.437219	NR_045728	ENSMUSG00000097633	Gm16617	-	predicted gene, 16617	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124966874-2	chr6	124966764	124966964	+	906.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-1326.0	NM_001164089	26894.0	Mm.244536	NM_012003	ENSMUSG00000030127	Cops7a	D6Ertd35e|SGN7a	COP9 signalosome subunit 7A	protein-coding	0.0523697770481789	-0.428811826791536	-0.433299050502267	-0.436768773069496	-0.441683705684453	0.335488343819779	-0.432308400300749	-0.436162129993693	0.886934096145362	0.741891276913931	1
Merged-chr3-87905425-2	chr3	87905325	87905525	+	914.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008231)	promoter-TSS (NM_008231)	-896.0	NM_008231	15191.0	Mm.292208	NM_008231	ENSMUSG00000004897	Hdgf	AI118077|D3Ertd299e	hepatoma-derived growth factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78860707-4	chr15	78860621	78860821	+	866.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-5192.0	NM_025622	107753.0	Mm.390793	NM_025622	ENSMUSG00000043501	Lgals2	2200008F12Rik|AI324147	lectin, galactose-binding, soluble 2	protein-coding	3.40391488510538	1.57190227217265	2.06007042059243	2.53556321130442	4.60311540441687	3.63257572484236	2.2959654413325	4.08718090452807	2.01477746014507	0.00778263782465462	0.0913660358319042
Merged-chr17-28258777-2	chr17	28258677	28258877	+	969.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011145, intron 2 of 7)	intron (NM_011145, intron 2 of 7)	-12931.0	NR_045427	69050.0	Mm.486938	NR_045427	ENSMUSG00000002250	1810013A23Rik	-	RIKEN cDNA 1810013A23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-125725599-4	chr10	125725503	125725703	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-240616.0	NM_177152	320398.0	Mm.275586	NM_177152	ENSMUSG00000020105	Lrig3	9030421L11Rik|9130004I02Rik|9430095K15Rik|mKIAA3016	leucine-rich repeats and immunoglobulin-like domains 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-67608375-3	chr11	67608341	67608541	+	692.761108	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109657, intron 2 of 13)	intron (NM_001109657, intron 2 of 13)	11886.0	NM_001277079	14457.0	Mm.40338	NM_008088	ENSMUSG00000033066	Gas7	AW124766|B230343A10Rik|Gas7-cb	growth arrest specific 7	protein-coding	0.227909946841308	-0.107571355134863	-0.111844051777977	0.281300153883455	-0.119739252339745	0.362082244022681	-0.110903603756637	0.0398897395578831	-0.229391317748532	0.91748026171648	1
Merged-chr18-56606733-2	chr18	56606643	56606843	+	849.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	18395.0	NM_026099	67343.0	Mm.87057	NM_026099	ENSMUSG00000032900	Tex43	1700065I17Rik|Tseg7	testis expressed 43	protein-coding	-1.33793447301127	-1.30826030895896	-1.31828845321677	-1.32652586948969	-0.950077789383471	-1.30608716826488	-1.15822981092724	-1.32505137591525	2.29714043412452	0.496446034091415	1
Merged-chr13-41015815-2	chr13	41015715	41015915	+	725.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025387)	promoter-TSS (NM_025387)	-435.0	NM_025387	66154.0	Mm.30005	NM_025387	ENSMUSG00000021361	Tmem14c	1110021D01Rik|AU020193|HSPC194	transmembrane protein 14C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-77355313-4	chr11	77355248	77355448	+	828.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291190, intron 1 of 13)	MER5A|DNA|hAT-Charlie	7068.0	NM_001291190	237860.0	Mm.440381	NM_177710	ENSMUSG00000037926	Ssh2	SSH-2|SSH-2L|mSSH-2L	slingshot protein phosphatase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128688435-2	chr2	128688335	128688535	+	965.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1040.0	NM_008569	17222.0	Mm.277408	NM_008569	ENSMUSG00000014355	Anapc1	2610021O03Rik|AI047775|AI853536|AW547281|Apc1|Mcpr|tsg24	anaphase promoting complex subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-14039600-4	chr13	14039499	14039699	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_130788)	promoter-TSS (NR_130788)	39.0	NR_130788	70430.0	Mm.260209	NM_178337	ENSMUSG00000039233	Tbce	2610206D02Rik|C530005D02Rik|pmn	tubulin-specific chaperone E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-21091831-4	chr11	21091730	21091930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023324, intron 1 of 6)	CpG	506.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-13545901-4	chr9	13545793	13545993	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74096.0	NM_001013813	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	0.559075216574956	0.443102038911699	0.871628793204187	0.838302431452827	0.79027323181821	0.444602646415403	0.881066895446697	0.726155961662844	0.176177891434716	0.91353000485822	1
Merged-chr3-135731474-4	chr3	135731355	135731555	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39908.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-7298730-4	chr7	7298603	7298803	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_049193)	promoter-TSS (NR_049193)	133.0	NM_001302386	12727.0	Mm.297883	NM_011334	ENSMUSG00000000605	Clcn4	Clc4-2|Clcn4-2|clC-4	chloride channel, voltage-sensitive 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70717274-2	chr8	70717160	70717360	+	804.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1283.0	NM_001195253	100502950.0	Mm.52981	NM_001195253	ENSMUSG00000095026	Gm3336	100041434|2410018E23Rik	predicted gene 3336	protein-coding	1.69663649998686	1.79327123515486	1.58937942561206	1.21031959207634	1.16761722797388	2.42101269089147	1.60226142796947	1.21547777027473	0.399016812397181	0.723578903310174	0.998431161219273
Merged-chr16-88342485-2	chr16	88342385	88342585	+	774.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-52220.0	NM_001346964	14805.0	Mm.5134	NM_010348	ENSMUSG00000022935	Grik1	A830007B11Rik|D16Ium24|D16Ium24e|GluK1|GluK5|Glur-5|Glur5|Glurbeta1	glutamate receptor, ionotropic, kainate 1	protein-coding	0.93233461325674	1.96925219343846	1.78850897785899	1.48918307611953	1.42431003068197	1.98544166597205	0.975625560257452	1.49700337279046	-0.258769444781695	0.834439886324844	0.998431161219273
Merged-chr3-108212594-2	chr3	108212494	108212694	+	682.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008596, exon 6 of 6)	3' UTR (NM_008596, exon 6 of 6)	-2067.0	NM_175183	72522.0	Mm.187326	NM_175183	ENSMUSG00000048997	Atxn7l2	2610528J18Rik	ataxin 7-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-121216182-2	chr5	121216082	121216282	+	666.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4037.0	NM_181421	269700.0	Mm.184589	NM_181421	ENSMUSG00000042744	Hectd4	A130010L24|AU042671|BC019639|EG545802|Gm15800|mKIAA0614	HECT domain E3 ubiquitin protein ligase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-29279181-4	chr6	29279093	29279293	+	952.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1948.0	NM_001101486	245884.0	Mm.33683	NM_001101486	ENSMUSG00000079652	Fam71f2	AI507611|GARI	family with sequence similarity 71, member F2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-186508582-3	chr1	186508477	186508677	+	814.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50104.0	NR_131124	320449.0	Mm.404477	NR_131124	ENSMUSG00000103690	A730004F24Rik	-	RIKEN cDNA A730004F24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-27614231-4	chr3	27614060	27614260	+	889.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356953, intron 4 of 26)	intron (NM_001356953, intron 4 of 26)	-29165.0	NR_037275	100526525.0		NR_037275	ENSMUSG00000092695	Mir3092	mir-3092|mmu-mir-3092	microRNA 3092	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-36936981-2	chr16	36936881	36937081	+	862.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_008225, intron 1 of 13)	intron (NM_008225, intron 1 of 13)	1998.0	NM_008225	15163.0	Mm.4091	NM_008225	ENSMUSG00000022831	Hcls1	AW213261|HS1	hematopoietic cell specific Lyn substrate 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99471613-2	chr15	99471513	99471713	+	562.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029236, intron 1 of 1)	intron (NM_029236, intron 1 of 1)	3117.0	NM_029236	75284.0	Mm.32826	NM_029236	ENSMUSG00000037525	Bcdin3d	4930556P03Rik|AV138748	BCDIN3 domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-38661065-4	chr15	38660960	38661160	+	892.912476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025494)	promoter-TSS (NM_025494)	-844.0	NM_025494	66335.0	Mm.276618	NM_025494	ENSMUSG00000022295	Atp6v1c1	1700025B18Rik|U13839	ATPase, H+ transporting, lysosomal V1 subunit C1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-91008398-4	chr12	91008293	91008493	+	972.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181815, intron 25 of 25)	intron (NM_181815, intron 25 of 25)	-37455.0	NR_045858	71349.0	Mm.442093	NR_045858	ENSMUSG00000085004	5430427M07Rik	-	RIKEN cDNA 5430427M07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-86242825-4	chr12	86242719	86242919	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027405, intron 1 of 9)	intron (NM_027405, intron 1 of 9)	961.0	NM_001324488	70373.0	Mm.252967	NM_027405	ENSMUSG00000021254	Gpatch2l	1700020O03Rik|4732487G21Rik|A630090I05Rik|Kiaa1152	G patch domain containing 2 like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-83881355-3	chr3	83881292	83881492	+	844.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-39784.0	NM_011905	24088.0	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-35778135-2	chr16	35778035	35778235	+	559.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_152314, intron 1 of 8)	B4A|SINE|B4	7749.0	NM_175111	66667.0	Mm.45272	NM_175111	ENSMUSG00000022849	Hspbap1	3830421G21Rik	Hspb associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-62968545-4	chr9	62968449	62968649	+	595.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019663, intron 1 of 13)	Charlie1a|DNA|hAT-Charlie	12330.0	NM_019663	56469.0	Mm.431253	NM_019663	ENSMUSG00000032405	Pias1	2900068C24Rik|Ddxbp1|GBP	protein inhibitor of activated STAT 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-60609602-3	chr1	60609505	60609705	+	865.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42840.0	NM_001045513	77300.0	Mm.440325	NM_001045513	ENSMUSG00000026014	Raph1	9430025M21Rik|C730009O10Rik|Lpd	Ras association (RalGDS/AF-6) and pleckstrin homology domains 1	protein-coding	-0.971846193215455	-1.32125498911739	-1.1746473638158	-1.33937805479113	-1.35087743162387	-1.31909880171484	-1.32895245901187	-1.3379150641624	-2.21753722681566	0.513113539718258	1
Merged-chr6-34029450-4	chr6	34029392	34029592	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028886)	promoter-TSS (NM_028886)	44.0	NM_028886	74354.0	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3632311-2	chr4	3632211	3632411	+	755.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24195.0	NR_040643	70143.0	Mm.417835	NR_040643	ENSMUSG00000085394	2210414B05Rik	-	RIKEN cDNA 2210414B05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-65625899-2	chr3	65625807	65626007	+	733.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33381.0	NR_106200	102465905.0		NR_106200	ENSMUSG00000098944	Mir8120	Gm27637|mmu-mir-8120	microRNA 8120	ncRNA	0.491697683569084	0.761316788377227	0.484936693229211	0.0123205283100259	0.00584484297804214	0.0241287173370752	0.0181949653119985	0.0131196070371972	-4.03868123803037	0.0610693743216444	1
Merged-chr3-53098337-3	chr3	53098232	53098432	+	947.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175386, intron 2 of 3)	intron (NM_175386, intron 2 of 3)	56785.0	NM_175386	108927.0	Mm.118617	NM_175386	ENSMUSG00000048332	Lhfp	2810489O06Rik|AI194968|Lhfpl6	lipoma HMGIC fusion partner	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-74554268-2	chr7	74554168	74554368	+	616.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038643, intron 1 of 10)	CpG	512.0	NM_023908	108116.0	Mm.425467	NM_023908	ENSMUSG00000025790	Slco3a1	5830414C08Rik|Anr1|MJAM|OATP-D|R75096|Slc21a11	solute carrier organic anion transporter family, member 3a1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-116441815-1	chr12	116441715	116441915	+	549.0	f1_c57bl6.idr	intron (NM_133762, intron 23 of 28)	ORR1D1|LTR|ERVL-MaLR	36413.0	NM_133762	76044.0	Mm.491196	NM_133762	ENSMUSG00000042029	Ncapg2	5830426I05Rik|Luzp5|Mtb|mCAP-G2	non-SMC condensin II complex, subunit G2	protein-coding	1.58329094193741	0.989412160561496	0.948896524380695	1.4712096741276	0.548583269655338	0.584711115941167	0.57314923821586	0.759289968043479	-3.96714064693916	0.0146918415896063	0.143078502753325
Merged-chr16-94240349-4	chr16	94240241	94240441	+	985.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360045, intron 5 of 10)	L1MB4|LINE|L1	49950.0	NM_001360045	110948.0	Mm.30921	NM_139145	ENSMUSG00000040820	Hlcs	410I21.SP6|D16Jhu34	holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134047601-4	chr6	134047504	134047704	+	757.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007961, intron 1 of 7)	MTEb|LTR|ERVL-MaLR	11904.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5615127-4	chr17	5615020	5615220	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	122520.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-74675172-2	chr15	74675072	74675272	+	580.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2602.0	NM_018790	11838.0	Mm.491310	NM_018790	ENSMUSG00000022602	Arc	Arc3.1|C86064|arg3.1|mArc	activity regulated cytoskeletal-associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-37056911-4	chr13	37056799	37056999	+	934.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6655.0	NM_001166391	74145.0	Mm.235105	NM_028784	ENSMUSG00000039109	F13a1	1200014I03Rik|AI462306|F13a	coagulation factor XIII, A1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-37041229-3	chr9	37041133	37041333	+	827.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029838, intron 2 of 12)	L2c|LINE|L2	106089.0	NM_148950	208076.0	Mm.260335	NM_148950	ENSMUSG00000035934	Pknox2	D230005H23Rik|Prep2	Pbx/knotted 1 homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85289059-2	chr12	85288959	85289159	+	755.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172414, intron 1 of 2)	intron (NM_172414, intron 1 of 2)	468.0	NM_172414	72350.0	Mm.158810	NM_172414	ENSMUSG00000045064	Zc2hc1c	2810002I04Rik|AV046379|Fam164c	zinc finger, C2HC-type containing 1C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-128680138-3	chr8	128679994	128680194	+	922.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5560.0	NM_010578	16412.0	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-4353441-4	chr18	4353364	4353564	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040328)	promoter-TSS (NR_040328)	-83.0	NR_040328	73915.0	Mm.482777	NR_040328		4833419F23Rik	-	RIKEN cDNA 4833419F23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-86856119-2	chr4	86856019	86856219	+	822.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009096, intron 3 of 4)	intron (NM_009096, intron 3 of 4)	1248.0	NM_009096	20104.0	Mm.379007	NM_009096	ENSMUSG00000028495	Rps6	S6R	ribosomal protein S6	protein-coding	-0.325523219287089	-0.0729870329188683	-0.698346409607964	-0.701003629601155	-0.704756005197865	-0.694122997021887	-0.69758651694788	-0.700539528171548	-3.25652399919928	0.253452741391918	1
Merged-chr6-113283398-2	chr6	113283298	113283498	+	739.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_170673, exon 4 of 20)	exon (NM_170673, exon 4 of 20)	1091.0	NM_170673	211232.0	Mm.65597	NM_170673	ENSMUSG00000030270	Cpne9	A730016F12Rik|mKIAA4217	copine family member IX	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-64532850-4	chr1	64532743	64532943	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009952)	promoter-TSS (NM_009952)	39.0	NM_001037726	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83711174-4	chr6	83711086	83711286	+	818.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011912)	promoter-TSS (NM_011912)	-78.0	NM_011912	24113.0	Mm.307165	NM_011912	ENSMUSG00000034777	Vax2	Dres93	ventral anterior homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-106421961-4	chr9	106421858	106422058	+	959.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7453.0	NM_001324533	19944.0	Mm.288696	NM_009082	ENSMUSG00000048758	Rpl29	Rpl43	ribosomal protein L29	protein-coding	4.90582186995977	3.97122401464358	5.16474743973064	4.51717525588319	5.12635186486823	4.37583537854084	3.94691636490833	4.58404110227765	-0.160268004328305	0.70007866281846	0.998431161219273
Merged-chr1-191172641-2	chr1	191172541	191172741	+	571.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007498, intron 2 of 3)	B3|SINE|B2	-7824.0	NM_001109759	619288.0	Mm.61148	NM_001109759	ENSMUSG00000091017	Fam71a	4933417M04Rik|GARI-L4	family with sequence similarity 71, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132838270-4	chr4	132838151	132838351	+	863.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355198, intron 2 of 6)	intron (NM_001355198, intron 2 of 6)	4883.0	NM_001355198	100336.0	Mm.105230	NM_146154	ENSMUSG00000028882	Ppp1r8	6330548N22Rik|AU044684|NIPP1	protein phosphatase 1, regulatory (inhibitor) subunit 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-33630675-2	chr5	33630575	33630775	+	782.916626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1040.0	NM_001359463	74504.0	Mm.294695	NM_178390	ENSMUSG00000037339	Fam53a	2410018C17Rik|5430419M09Rik|Dntnp	family with sequence similarity 53, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-118044453-3	chr3	118044356	118044556	+	956.194458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-175520.0	NM_029655	76561.0	Mm.33824	NM_029655	ENSMUSG00000028007	Snx7	2510028H01Rik	sorting nexin 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-5471323-3	chr16	5471215	5471415	+	928.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-215359.0	NM_027446	70511.0	Mm.45780	NM_027446	ENSMUSG00000022544	Eef2kmt	5730409G15Rik|Fam86|Fam86a|eEF2-KMT	eukaryotic elongation factor 2 lysine methyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-40609774-1	chr19	40609674	40609874	+	576.0	f1_c57bl6.idr	intron (NM_026260, intron 3 of 13)	intron (NM_026260, intron 3 of 13)	2441.0	NM_026260	67590.0	Mm.60758	NM_026260	ENSMUSG00000025008	Tctn3	4930521E07Rik|AI197391|Tect3	tectonic family member 3	protein-coding	-0.333278713882243	-0.580540804722807	-0.583915662852712	0.0242603543918012	-0.590167943561623	-0.579778477787793	-0.583172304956956	-0.424604923813967	-2.37810238105761	0.369330713713628	1
Merged-chr2-6695612-4	chr2	6695508	6695708	+	994.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110232, intron 4 of 15)	intron (NM_001110232, intron 4 of 15)	26054.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-97699159-4	chr13	97699047	97699247	+	925.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	48264.0	NR_152140	403201.0	Mm.110162	NR_152140		5330416C01Rik	Gm532	RIKEN cDNA 5330416C01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34103049-4	chr17	34102962	34103162	+	952.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	-7753.0	NR_046183	414076.0	Mm.473092	NR_046183	ENSMUSG00000098197	BC051537	-	cDNA sequence BC051537	ncRNA	3.29142022850086	3.68548922960766	3.56520360758131	4.06755908009447	3.46171527630661	2.95922244123233	3.22570493555255	3.8226621708848	-0.407958537964446	0.450837171533097	0.916907738284681
Merged-chr10-67631516-2	chr10	67631416	67631616	+	550.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	-59557.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-77825881-4	chr9	77825759	77825959	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	71324.0	NM_010295	14629.0	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	3.6813702755882	4.4418564857177	3.99254921310215	3.73495426977203	4.46296092789934	4.81332553135941	4.58384179372736	3.96885164085873	0.659407852963143	0.124276741158095	0.552249014968455
Merged-chr10-77353581-2	chr10	77353481	77353681	+	846.400024	f1_balb.idr|f1_c57bl6.idr	intron (NM_001024838, intron 2 of 11)	intron (NM_001024838, intron 2 of 11)	64692.0	NM_130895	110532.0	Mm.276815	NM_130895	ENSMUSG00000020262	Adarb1	1700057H01Rik|AW124433|AW558573|Adar2|BB220382|D10Bwg0447e|Red1	adenosine deaminase, RNA-specific, B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-121111343-4	chr8	121111257	121111457	+	982.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-2978.0	NM_001166482	234814.0	Mm.31690	NM_172761	ENSMUSG00000031816	Mthfsd	AW049977|BC052066|C920004D05	methenyltetrahydrofolate synthetase domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-62181753-4	chr15	62181655	62181855	+	974.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132746, intron 3 of 6)	intron (NR_132746, intron 3 of 6)	37696.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-33302252-4	chr12	33302162	33302362	+	985.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033436)	promoter-TSS (NM_001033436)	-253.0	NM_001033436	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	3.93947559212964	2.22180255951014	4.48689500628531	3.91469984701585	4.06805269536045	4.05252337095065	4.17277855094241	3.80434800107131	0.223749477707999	0.680221232275029	0.995506882643648
Merged-chr8-84743733-2	chr8	84743631	84743831	+	603.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081982, intron 2 of 9)	intron (NM_001081982, intron 2 of 9)	30638.0	NM_001081981	18032.0	Mm.9394	NM_010906	ENSMUSG00000001911	Nfix	CTF|NF-I/X|NF1-X|NFI-X	nuclear factor I/X	protein-coding	-1.18302134691506	-1.15893813914636	-1.16954601498264	-1.01688116837571	-0.706931804553649	-1.15663936820083	-1.16714462441132	-1.17669990531683	1.47460249523148	0.657520571745587	1
Merged-chr16-90281797-2	chr16	90281697	90281897	+	820.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346799, intron 1 of 19)	B1_Mus2|SINE|Alu	2689.0	NM_001346799	224432.0	Mm.439811	NM_178923	ENSMUSG00000022983	Scaf4	AA517739|Sfrs15|Sra4|Srsf15	SR-related CTD-associated factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-24974182-2	chr2	24974082	24974282	+	569.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001031808, exon 2 of 2)	3' UTR (NM_001031808, exon 2 of 2)	916.0	NM_001031808	107733.0	Mm.23010	NM_001031808	ENSMUSG00000036850	Mrpl41	MRP-L27|Rpml27	mitochondrial ribosomal protein L41	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115628841-2	chr11	115628741	115628941	+	606.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026071)	promoter-TSS (NM_026071)	-546.0	NM_001252395	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129085227-1	chr2	129085127	129085327	+	553.0	f1_balb.idr	intron (NM_027192, intron 5 of 6)	intron (NM_027192, intron 5 of 6)	-15769.0	NM_009086	20017.0	Mm.259078	NM_009086	ENSMUSG00000027395	Polr1b	128kDa|D630020H17Rik|RPA116|RPA135|RPA2|Rpo1-2	polymerase (RNA) I polypeptide B	protein-coding	-1.33793447301127	-1.30826030895896	-1.31828845321677	-1.32652586948969	-0.950077789383471	-1.30608716826488	-1.15822981092724	-1.32505137591525	2.29714043412452	0.496446034091415	1
Merged-chr10-26785370-3	chr10	26785275	26785475	+	712.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176837, intron 1 of 14)	intron (NM_176837, intron 1 of 14)	12863.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-8666657-4	chr16	8666524	8666724	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025821, intron 1 of 3)	intron (NM_025821, intron 1 of 3)	5529.0	NM_025821	52502.0	Mm.142095	NM_025821	ENSMUSG00000008393	Carhsp1	1200011K09Rik|Crhsp-24|D16Ertd465e	calcium regulated heat stable protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75153383-4	chr11	75153273	75153473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001002764, intron 15 of 18)	intron (NM_001002764, intron 15 of 18)	14779.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-78631548-2	chr14	78631449	78631649	+	698.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_104044, intron 1 of 27)	Lx8|LINE|L1	-2259.0	NM_001281794	380921.0	Mm.89591	NM_001081336	ENSMUSG00000034731	Dgkh	5930402B05Rik|D130015C16|DGK	diacylglycerol kinase, eta	protein-coding	-0.640837965250207	-0.629964330583184	-0.633529948180929	-0.0996494004400971	-0.64016010430076	-0.123621453244201	-0.632743785522108	-0.635798735565488	-0.091200599602648	0.974783044145781	1
Merged-chr17-35231108-1	chr17	35231008	35231208	+	827.0	f1_c57bl6.idr	intron (NM_010909, intron 2 of 3)	ID_B1|SINE|B4	-3902.0	NM_001347351	66237.0	Mm.396107	NM_023179	ENSMUSG00000024403	Atp6v1g2	1500002D01Rik|Atp6g2|NG38|VAG2	ATPase, H+ transporting, lysosomal V1 subunit G2	protein-coding	2.71533837171636	1.1345376944286	2.46938255381902	1.70602791626333	2.50188381254271	1.14109008823375	2.06723812936316	1.08494268855223	-0.703782073662455	0.552843721086294	0.959564390599126
Merged-chr8-79389506-3	chr8	79389392	79389592	+	706.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008539, intron 1 of 6)	intron (NM_008539, intron 1 of 6)	9976.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-68956263-2	chr11	68956163	68956363	+	601.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177566, intron 1 of 15)	intron (NM_177566, intron 1 of 15)	595.0	NM_177566	442801.0	Mm.376147	NM_177566	ENSMUSG00000052921	Arhgef15	D130071N09|D530030K12Rik|E5	Rho guanine nucleotide exchange factor (GEF) 15	protein-coding	-1.7024385483431	-1.81249224917775	-1.82134771053534	-1.82862185015837	-1.70038292649591	-1.81057323376012	-1.81934302819017	-1.82731978264371	0.0376840119903864	0.991491645451152	1
Merged-chr19-40740240-2	chr19	40740140	40740340	+	803.666626	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009848, exon 10 of 10)	3' UTR (NM_009848, exon 10 of 10)	80470.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-142470212-4	chr3	142470096	142470296	+	971.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26738.0	NM_153564	229898.0	Mm.459245	NM_153564	ENSMUSG00000105504	Gbp5	5330409J06Rik|Gbp5a	guanylate binding protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78879873-2	chr15	78879773	78879973	+	897.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145929, intron 1 of 16)	intron (NM_145929, intron 1 of 16)	2683.0	NM_145929	106039.0	Mm.251331	NM_145929	ENSMUSG00000033128	Gga1	4930406E12Rik|AU016030|AW209092	golgi associated, gamma adaptin ear containing, ARF binding protein 1	protein-coding	0.359979131975351	-0.0951020483162931	-0.100133600234275	0.198934758553218	-0.109498839536865	-0.0939676693147359	-0.0990239634143382	0.618857993819338	0.180971557663786	0.9377880857715	1
Merged-chr18-37928040-4	chr18	37927931	37928131	+	884.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305981, intron 1 of 28)	MIR3|SINE|MIR	7445.0	NM_001305981	13367.0	Mm.195916	NM_007858	ENSMUSG00000024456	Diaph1	D18Wsu154e|Dia1|Diap1|Drf1|p140mDia	diaphanous related formin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-68431850-4	chr11	68431831	68432031	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177320)	promoter-TSS (NM_177320)	-194.0	NM_177320	320207.0	Mm.244960	NM_177320	ENSMUSG00000020901	Pik3r5	AV230647|F730038I15Rik|Foap2|p101	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-119016477-1	chr2	119016377	119016577	+	655.0	f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	12916.0	NM_199310	269336.0	Mm.292465	NM_199310	ENSMUSG00000039983	Ccdc32	Gm631	coiled-coil domain containing 32	protein-coding	0.0965395309851642	0.120358952371192	0.313142782517181	1.21140013856782	0.407630331780423	0.524925180890163	0.114347877040158	0.107681259225331	-1.38844978262877	0.48168957134027	1
Merged-chr17-83633422-2	chr17	83633322	83633522	+	654.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1527.0	NM_153512	225030.0	Mm.223506	NM_153512	ENSMUSG00000045053	Kcng3	KV6.3|Kv10.1a|Kv10.1b	potassium voltage-gated channel, subfamily G, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98001139-2	chr11	98001039	98001239	+	642.666687	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001282977)	TTS (NM_001282977)	-4966.0	NR_152188	217151.0	Mm.277896	NM_207231	ENSMUSG00000038352	Arl5c	Arl12|BC065791	ADP-ribosylation factor-like 5C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-103091550-2	chr9	103091450	103091650	+	799.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20524.0	NM_173781	270192.0	Mm.490252	NM_173781	ENSMUSG00000032549	Rab6b	9630015C03|AI844641|C330006L04Rik|D9Bwg0185e	RAB6B, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-70967853-1	chr2	70967753	70967953	+	692.666687	f0_c57.idr	intron (NM_145524, intron 7 of 9)	B4A|SINE|B4	50521.0	NM_001110512	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-84533369-1	chr1	84533269	84533469	+	745.333313	f0_balb.idr	intron (NM_152915, intron 5 of 12)	intron (NM_152915, intron 5 of 12)	-162470.0	NR_039588	100628595.0		NR_039588	ENSMUSG00000093254	Mir5126	mir-5126|mmu-mir-5126|mu-mir-5126	microRNA 5126	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-113617825-4	chr11	113617724	113617924	+	977.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1657.0	NM_009217	20606.0		NM_009217	ENSMUSG00000047904	Sstr2	SRIF-1|SS2R|SSTR-2|Smstr-2|Smstr2|sst2	somatostatin receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-19976719-4	chr14	19976604	19976804	+	961.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285911)	promoter-TSS (NM_001285911)	-11.0	NM_001285911	14702.0	Mm.41737	NM_010315	ENSMUSG00000043004	Gng2	-	guanine nucleotide binding protein (G protein), gamma 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-184537039-2	chr1	184536939	184537139	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_040472, intron 2 of 5)	PB1D9|SINE|Alu	20652.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-169926721-2	chr2	169926621	169926821	+	637.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36466.0	NR_131974	446211.0	Mm.266854	NR_131974	ENSMUSG00000103935	AY702102	STDP1	cDNA sequence AY702102	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-42932135-2	chr6	42932035	42932235	+	555.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	4902.0	NM_146295	258292.0	Mm.222992	NM_146295	ENSMUSG00000073111	Olfr446	MOR261-12	olfactory receptor 446	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-122777052-4	chr2	122776953	122777153	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027888, intron 1 of 9)	intron (NR_027888, intron 1 of 9)	-4946.0	NM_021507	59010.0	Mm.28986	NM_021507	ENSMUSG00000005803	Sqor	0610039J17Rik|4930557M22Rik|Sqrdl	sulfide quinone oxidoreductase	protein-coding	4.67545276377694	4.94102462019467	3.66964553427419	4.66922472976687	4.71030583179814	5.1333504656807	4.5956714556192	5.05443849193233	0.398249348464639	0.295545896668227	0.7986401962885
Merged-chr11-109649377-2	chr11	109649277	109649477	+	878.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001313974)	promoter-TSS (NM_001313974)	-28.0	NM_001313973	19084.0	Mm.30039	NM_021880	ENSMUSG00000020612	Prkar1a	1300018C22Rik|RIalpha|Tse-1|Tse1	protein kinase, cAMP dependent regulatory, type I, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34606879-2	chr17	34606779	34606979	+	819.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163379, intron 1 of 6)	intron (NM_001163379, intron 1 of 6)	1018.0	NM_001163379	55979.0	Mm.8684	NM_018862	ENSMUSG00000034254	Agpat1	1-AGP|1-AGPAT|AW047140	1-acylglycerol-3-phosphate O-acyltransferase 1 (lysophosphatidic acid acyltransferase, alpha)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-53574233-2	chr19	53574133	53574333	+	586.083374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26163.0	NM_007790	13006.0	Mm.14910	NM_007790	ENSMUSG00000024974	Smc3	Bamacan|Cspg6|HCAP|Mmip1|SMC-3|SmcD	structural maintenance of chromosomes 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83428220-2	chr6	83428120	83428320	+	718.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347313, intron 3 of 11)	intron (NM_001347313, intron 3 of 11)	13458.0	NM_183138	194388.0	Mm.211030	NM_183138	ENSMUSG00000034832	Tet3	B430006D22Rik|BC037432|D230004J03Rik	tet methylcytosine dioxygenase 3	protein-coding	1.28838562249244	0.542671285242716	0.53308411078903	0.525634526189038	1.04150931657405	1.08417518452448	0.535205155025108	1.30860601110453	1.14426620885712	0.505789603485633	0.941634925976032
Merged-chr14-75011817-1	chr14	75011717	75011917	+	565.5	f1_c57bl6.idr	intron (NR_030568, intron 3 of 3)	L1_Mus3|LINE|L1	-4210.0	NM_198642	271221.0	Mm.320280	NM_198642	ENSMUSG00000034959	Rubcnl	5031414D18Rik|Gm744|Gm911|Kiaa0226l	RUN and cysteine rich domain containing beclin 1 interacting protein like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-43478717-3	chr13	43478635	43478835	+	964.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019930, intron 1 of 13)	intron (NM_019930, intron 1 of 13)	2238.0	NM_019930	56705.0	Mm.148781	NM_019930	ENSMUSG00000038546	Ranbp9	IBAP-1|Ibap1|RanBPM	RAN binding protein 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3737187-3	chr12	3737105	3737305	+	832.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162465, intron 12 of 17)	intron (NM_001162465, intron 12 of 17)	-69775.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-20117462-1	chr11	20117362	20117562	+	742.0	f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-4511.0	NM_146243	66713.0	Mm.259045	NM_146243	ENSMUSG00000020152	Actr2	4921510D23Rik|AA409782|Arp2|D6Ertd746e	ARP2 actin-related protein 2	protein-coding	3.82821666098698	3.62332369486623	1.96472344256154	3.41005877844388	3.19344936624093	2.96654212545757	3.1967536484768	3.09794808957046	-0.431966634842766	0.509256720431096	0.944258808801809
Merged-chr6-117461739-2	chr6	117461639	117461839	+	699.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33496.0	NR_152214	100126203.0	Mm.217172	NR_152214		6820426E19Rik	Gm43983	RIKEN cDNA 6820426E19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-101846294-3	chr3	101846195	101846395	+	846.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10072.0	NM_172295	242125.0	Mm.32900	NM_172295	ENSMUSG00000044313	Mab21l3	-	mab-21-like 3 (C. elegans)	protein-coding	1.86165120480793	2.50836811887139	1.83809337290215	2.64381460323232	1.87662957425507	3.00261131310149	1.85169020394728	2.65749920487408	0.401186474918636	0.648115819282177	0.984971605872381
Merged-chr2-45022817-2	chr2	45022717	45022917	+	790.75	f1_balb.idr|f1_c57bl6.idr	TTS (NR_039591)	TTS (NR_039591)	360.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-26205724-4	chr6	26205633	26205833	+	941.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	274307.0	NR_040771	626904.0	Mm.126787	NR_040771	ENSMUSG00000106799	Gm20756	-	predicted gene, 20756	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-59247081-2	chr2	59246981	59247181	+	612.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 2 of 20)	Lx9|LINE|L1	86231.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101442257-4	chr11	101442171	101442371	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011289)	promoter-TSS (NM_011289)	26.0	NM_011289	19942.0	Mm.340658	NM_011289	ENSMUSG00000063316	Rpl27	-	ribosomal protein L27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-32239516-2	chr18	32239416	32239616	+	758.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133658)	promoter-TSS (NM_133658)	-815.0	NM_133658	13872.0	Mm.282335	NM_133658	ENSMUSG00000024382	Ercc3	BTF2 p89|Ercc-3|XPB	excision repair cross-complementing rodent repair deficiency, complementation group 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5106127-3	chr19	5106039	5106239	+	760.877747	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029576, intron 1 of 5)	intron (NM_029576, intron 1 of 5)	857.0	NM_029576	76308.0	Mm.182563	NM_029576	ENSMUSG00000024870	Rab1b	1110011F09Rik	RAB1B, member RAS oncogene family	protein-coding	1.71409978152742	0.800295601724653	1.18923681286293	1.15379945462093	0.943391841288854	0.803814857903581	2.06649562543696	1.30897005579177	0.456306849210048	0.736704215855144	0.998431161219273
Merged-chr15-98872247-4	chr15	98872180	98872380	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1075.0	NM_001033276	381022.0	Mm.264889	NM_001033276	ENSMUSG00000048154	Kmt2d	ALR|BC032281|BC058659|C430014K11Rik|KMT2B|Mll2|Mll4	lysine (K)-specific methyltransferase 2D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-20806999-4	chr11	20807028	20807228	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	23980.0	NM_173752	216551.0	Mm.76694	NM_173752	ENSMUSG00000042363	Lgalsl	1110067D22Rik|A530071M23|Grpa|Hspc159|Lgalsla	lectin, galactoside binding-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-47015417-1	chr4	47015317	47015517	+	726.0	f1_c57bl6.idr	TTS (NM_001356426)	TTS (NM_001356426)	-23703.0	NM_001081141	242425.0	Mm.101909	NM_001081141	ENSMUSG00000039809	Gabbr2	GABABR2|Gb2|Gm425|Gpr51	gamma-aminobutyric acid (GABA) B receptor, 2	protein-coding	1.14068457125091	1.8124191480084	0.190517780594208	0.417674380055688	0.16394410387143	0.207147731023439	0.19355835819267	0.181616588090901	-4.7968840106483	0.00936102915808578	0.10405833338979
Merged-chr17-29029258-1	chr17	29029158	29029358	+	1000.0	f1_c57bl6.idr	Intergenic	B3|SINE|B2	-3402.0	NM_013663	20383.0	Mm.6787	NM_013663	ENSMUSG00000071172	Srsf3	AL024116|Sfrs3|X16	serine/arginine-rich splicing factor 3	protein-coding	-0.973244663428994	-0.952315594721777	-0.00450891433157474	-0.968117103546747	-0.972477992091202	-0.949249181104308	-0.963262521912125	-0.967581074445158	-3.30458610020401	0.291235735201707	1
Merged-chr17-15529097-3	chr17	15528990	15529190	+	605.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1789.0	NM_008799	18567.0	Mm.323	NM_008799	ENSMUSG00000014771	Pdcd2	AI528543|Pcd2|RP-8	programmed cell death 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-90017367-4	chr7	90017251	90017451	+	870.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C|LTR|ERVK	-11808.0	NR_110365	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-20509146-4	chr16	20509065	20509265	+	869.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172265, exon 16 of 16)	3' UTR (NM_172265, exon 16 of 16)	-7821.0	NM_001347176	13544.0	Mm.247259	NM_007889	ENSMUSG00000003233	Dvl3	b2b2866Clo	dishevelled segment polarity protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-10586737-2	chr3	10586637	10586837	+	603.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13A|LTR|ERVK	-146607.0	NM_001127191	74718.0	Mm.440548	NM_029068	ENSMUSG00000027534	Snx16	4930522N22Rik|AI117577|AI747675	sorting nexin 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-46963096-5	chr18	46962954	46963154	+	955.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178377, intron 2 of 6)	intron (NM_178377, intron 2 of 6)	4178.0	NM_178377	69456.0	Mm.210734	NM_178377	ENSMUSG00000042705	Commd10	2310003A05Rik|AU019438|DRWMS2|Tg(Vav1-icre)A2Kio|Vav-cre|Vav-iCre|Vav1-Cre|VavCre	COMM domain containing 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122145546-4	chr5	122145452	122145652	+	952.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7490.0	NM_183307	330188.0	Mm.386907	NM_183307	ENSMUSG00000043036	Ccdc63	4921511C16Rik	coiled-coil domain containing 63	protein-coding	1.49056594013116	1.90443531523516	1.63300781992234	1.47066031861837	1.00427462779419	0.871622160085303	1.07162547480411	1.04435275069633	-2.84732525081211	0.0325700778953268	0.251680417295919
Merged-chr11-45750467-4	chr11	45750431	45750631	+	993.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57552.0	NR_045876	100009664.0	Mm.415439	NR_045876		F630206G17Rik	-	RIKEN cDNA F630206G17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-61861187-4	chr11	61861088	61861288	+	920.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Charlie1a|DNA|hAT-Charlie	-6096.0	NM_013881	29869.0	Mm.162025	NM_013881	ENSMUSG00000004798	Ulk2	A830085I22Rik|AU015340|Unc51.2|mKIAA0623	unc-51 like kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-13328586-4	chr1	13328520	13328720	+	937.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008678, intron 1 of 22)	intron (NM_008678, intron 1 of 22)	43809.0	NM_001302702	17978.0	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-47843325-1	chr9	47843225	47843425	+	548.0	f1_c57bl6.idr	intron (NM_001310841, intron 10 of 11)	intron (NM_001310841, intron 10 of 11)	-25117.0	NR_046048	100038460.0	Mm.447649	NR_046048		Gm10677	-	predicted gene 10677	ncRNA	-0.420613679518754	-0.408799316731888	0.03321139399064	-0.254851320433572	-0.419878850345806	-0.407923285234539	0.155598152162065	-0.415145651106969	0.0719567084508146	0.977539926960414	1
Merged-chr1-132319375-2	chr1	132319275	132319475	+	832.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001195025, intron 1 of 7)	intron (NM_001195025, intron 1 of 7)	3250.0	NM_028778	74137.0	Mm.100666	NM_028778	ENSMUSG00000009772	Nuak2	1200013B22Rik|Omphk2|Snark|mKIAA0537	NUAK family, SNF1-like kinase, 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-109169548-2	chr7	109169448	109169648	+	726.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001302205, intron 1 of 3)	CpG	964.0	NM_001302206	109594.0	Mm.360145	NM_057173	ENSMUSG00000036111	Lmo1	Rbtn-1|Rbtn1|Ttg1	LIM domain only 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-156189369-1	chr4	156189269	156189469	+	616.0	f1_balb.idr	intron (NM_021604, intron 2 of 35)	intron (NM_021604, intron 2 of 35)	8119.0	NM_021604	11603.0	Mm.273098	NM_021604	ENSMUSG00000041936	Agrn	Agrin|nmf380	agrin	protein-coding	0.855210816750557	0.108179984961183	0.101160229031866	0.0957105458326722	0.087956532089667	0.891416058032699	0.462230217001933	0.0966647766751723	0.52099180936298	0.807447549487533	1
Merged-chr13-93231227-4	chr13	93231126	93231326	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38809.0	NM_001361537	100715.0	Mm.242865	NM_133905	ENSMUSG00000042167	Papd4	8030446C20Rik|AI649009|GLD-2|Gld2	PAP associated domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-11048684-2	chr19	11048584	11048784	+	576.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_102366, intron 1 of 2)	MLTR14|LTR|ERV1	1882.0	NR_102366	107350.0	Mm.6381	NM_001177351	ENSMUSG00000075010	AW112010	-	expressed sequence AW112010	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-37499520-1	chr19	37499420	37499620	+	652.0	f0_c57.idr	Intergenic	Lx9|LINE|L1	34266.0	NR_131009	78640.0	Mm.234265	NR_131008		1700122C19Rik	-	RIKEN cDNA 1700122C19 gene	ncRNA	0.788285444683903	0.374067716186345	0.182985204499203	0.691402564567682	0.433565134353894	0.189908623317305	0.357445993749863	0.179393687604586	-1.81105668747511	0.345593915890759	1
Merged-chr14-64834047-5	chr14	64833857	64834057	+	971.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177338, intron 6 of 9)	intron (NM_177338, intron 6 of 9)	115900.0	NM_177338	219150.0	Mm.344074	NM_177338	ENSMUSG00000021972	Hmbox1	AI451877|AI604847|F830020C16Rik	homeobox containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-27412896-4	chr14	27412794	27412994	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC|LINE|L1	-15940.0	NM_028945	218850.0	Mm.247767	NM_028945	ENSMUSG00000040651	Fam208a	4732418E12|4933409E02Rik|D14Abb1e|MommeD6	family with sequence similarity 208, member A	protein-coding	3.389366919007	3.12827638732031	1.56079343834107	3.38890129837682	2.71507898132945	2.8182353554175	2.27568098431794	3.2732712611803	-0.406111817831204	0.598741177927449	0.972303230574462
Merged-chr1-52952381-2	chr1	52952281	52952481	+	968.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144953, intron 1 of 1)	intron (NM_144953, intron 1 of 1)	459.0	NM_144953	67080.0	Mm.236287	NM_144953	ENSMUSG00000043629	1700019D03Rik	2410136C24Rik|AA410151|smAKAP	RIKEN cDNA 1700019D03 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-4430542-4	chr10	4430445	4430645	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358796, intron 1 of 13)	L2|LINE|L2	-1379.0	NR_002891	433224.0	Mm.153111	NR_002891	ENSMUSG00000112693	Gm5512	EG433224	required for meiotic nuclear division 1 pseudogene	pseudo	3.44297816197626	4.59119297349403	3.74905645860625	5.16300608214956	4.10695557270137	3.39473041903257	4.52958986217082	4.35359888472374	-0.322475048862465	0.522486031596981	0.947836760490745
Merged-chr5-103824842-4	chr5	103824743	103824943	+	977.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133919, intron 7 of 19)	intron (NM_133919, intron 7 of 19)	70270.0	NM_001080798	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-61804321-3	chr13	61804192	61804392	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32712.0	NR_028430	432812.0	Mm.317358	NR_028430		BC052688	-	cDNA sequence BC052688	pseudo	4.8522541689932	4.47783061765095	5.41903833346572	3.70427830524481	1.84435374154367	2.80378699543538	1.48998829937239	1.41401347807686	-4.37821929529667	2.13546850382072e-09	3.30449982968112e-07
Merged-chr1-180261129-4	chr1	180261059	180261259	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-4859.0	NM_001128605	19165.0	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-62601527-2	chr10	62601427	62601627	+	779.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019553, intron 1 of 14)	intron (NM_019553, intron 1 of 14)	771.0	NM_019553	56200.0	Mm.413275	NM_019553	ENSMUSG00000020075	Ddx21	AI255159|AL022742|D10Ertd645e|D10Wsu42e	DEAD (Asp-Glu-Ala-Asp) box polypeptide 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-59402027-4	chr2	59401924	59402124	+	971.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15342.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-101293224-4	chr4	101293179	101293379	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-27997.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-94779313-4	chr8	94779209	94779409	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009142, intron 2 of 2)	intron (NM_009142, intron 2 of 2)	7129.0	NM_009142	20312.0	Mm.103711	NM_009142	ENSMUSG00000031778	Cx3cl1	AB030188|ABCD-3|AI848747|CX3C|Cxc3|D8Bwg0439e|Scyd1	chemokine (C-X3-C motif) ligand 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-63132482-2	chr11	63132382	63132582	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302259)	promoter-TSS (NM_001302259)	-87.0	NM_001302259	18858.0	Mm.1237	NM_008885	ENSMUSG00000018217	Pmp22	22kDa|Gas-3|HNPP|TRE002|Tr|trembler	peripheral myelin protein 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-23052748-4	chr2	23052627	23052827	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12486.0	NM_145994	11308.0	Mm.205647	NM_007380	ENSMUSG00000058835	Abi1	E3B1|NAP1|Ssh3bp1|abi-1	abl-interactor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-99523020-2	chr5	99522920	99523120	+	696.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 2 of 3)	intron (NR_030692, intron 2 of 3)	206040.0	NR_030692	319818.0	Mm.295233	NR_030692	ENSMUSG00000089809	A930011G23Rik	-	RIKEN cDNA A930011G23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-28073134-3	chr5	28072877	28073077	+	823.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153526, intron 1 of 4)	intron (NM_153526, intron 1 of 4)	1565.0	NM_153526	231070.0	Mm.30221	NM_153526	ENSMUSG00000045294	Insig1	1810013C12Rik|Insig-1	insulin induced gene 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-60851813-2	chr1	60851713	60851913	+	630.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57212.0	NM_009843	12477.0	Mm.390	NM_009843	ENSMUSG00000026011	Ctla4	Cd152|Ctla-4|Ly-56	cytotoxic T-lymphocyte-associated protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36738290-2	chr18	36738194	36738394	+	831.466675	f1_balb.idr|f1_c57bl6.idr	intron (NM_028036, intron 5 of 11)	intron (NM_028036, intron 5 of 11)	3224.0	NM_028036	71983.0	Mm.135188	NM_028036	ENSMUSG00000006850	Tmco6	2410015B03Rik	transmembrane and coiled-coil domains 6	protein-coding	-0.655619171227547	-0.644192334715841	0.0417501918568002	-0.650820460030683	-0.654904983371273	-0.269658742200263	-0.647107273860515	-0.650315792508122	-1.23738702670608	0.668005622232728	1
Merged-chr12-108765962-4	chr12	108765864	108766064	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27347.0	NM_009537	22632.0	Mm.3868	NM_009537	ENSMUSG00000021264	Yy1	AW488674|NF-E1	YY1 transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-119971153-1	chr9	119971053	119971253	+	653.0	f1_c57bl6.idr	TTS (NM_153287)	TTS (NM_153287)	11870.0	NM_001357560	215418.0	Mm.491094	NM_153287	ENSMUSG00000032515	Csrnp1	4931429D10Rik|Axud1|CSRNP-1|URAX1|taip-3	cysteine-serine-rich nuclear protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152042207-4	chr1	152042254	152042454	+	836.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197990, intron 1 of 5)	intron (NM_197990, intron 1 of 5)	47966.0	NM_197990	69399.0	Mm.278031	NM_197990	ENSMUSG00000032666	1700025G04Rik	2610510E02Rik|2900042O04Rik	RIKEN cDNA 1700025G04 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-44987757-2	chr2	44987657	44987857	+	573.375	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001355289, exon 11 of 11)	3' UTR (NM_001355289, exon 11 of 11)	35420.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-67082256-4	chr13	67082160	67082360	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001012448)	promoter-TSS (NM_001012448)	-715.0	NM_001292066	432769.0	Mm.458849	NM_001012325	ENSMUSG00000058883	Zfp708	Rslcan11	zinc finger protein 708	protein-coding	3.37941020357089	4.68001370767787	4.76859326041289	3.39377598907321	3.23783486081934	3.91233558730293	3.70295081362789	3.81217572772667	-0.730177369230773	0.16754953686219	0.633485087165721
Merged-chr14-63073169-2	chr14	63073069	63073269	+	836.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER31B|LTR|ERV1	18096.0	NR_046019	72609.0	Mm.387101	NR_046019		2700070H01Rik	-	RIKEN cDNA 2700070H01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-35670672-4	chr5	35670572	35670772	+	952.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042615, intron 2 of 6)	intron (NM_001042615, intron 2 of 6)	9108.0	NM_001042615	78558.0	Mm.274255	NM_030127	ENSMUSG00000029096	Htra3	2210021K23Rik|9530081K03Rik|Prsp|Tasp	HtrA serine peptidase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-108718304-3	chr8	108718207	108718407	+	818.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007496, intron 1 of 9)	intron (NM_007496, intron 1 of 9)	3663.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115706826-2	chr11	115706726	115706926	+	827.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_008163, intron 1 of 5)	B3|SINE|B2	1771.0	NM_008163	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-25510217-2	chr9	25510117	25510317	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 2 of 7)	RMER17B|LTR|ERVK	28620.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-47282221-2	chr19	47282057	47282257	+	678.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164717, intron 9 of 13)	intron (NM_001164717, intron 9 of 13)	-8568.0	NR_105961	102466782.0		NR_105961	ENSMUSG00000098786	Mir6995	Gm27576|mmu-mir-6995	microRNA 6995	ncRNA	1.69290243632935	1.40180724520383	2.23615701208855	1.5077663805972	1.70613283110133	1.7651938124738	1.96244690586118	1.66061473621039	0.0500257421471443	0.961255986206647	0.998431161219273
Merged-chr10-18055526-4	chr10	18055454	18055654	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001111065)	promoter-TSS (NM_001111065)	-386.0	NM_009048	19707.0	Mm.4479	NM_009048	ENSMUSG00000019854	Reps1	BB161292	RalBP1 associated Eps domain containing protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-60757092-6	chr18	60756907	60757107	+	771.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8342.0	NM_008306	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-57338202-4	chr17	57338092	57338292	+	923.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20494.0	NM_001355723	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-66136437-1	chr7	66136337	66136537	+	764.0	f0_balb.idr	intron (NM_001081163, intron 2 of 2)	intron (NM_001081163, intron 2 of 2)	26922.0	NM_001081163	269941.0	Mm.333916	NM_001081163	ENSMUSG00000032640	Chsy1	mKIAA0990	chondroitin sulfate synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-53830484-2	chr1	53830400	53830600	+	637.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001883, intron 26 of 28)	MIR|SINE|MIR	-18924.0	NR_106149	102465783.0		NR_106149	ENSMUSG00000098443	Mir7681	Gm27806|mmu-mir-7681	microRNA 7681	ncRNA	0.153628921026656	0.173068289463405	0.498095298766467	0.16180340197865	0.432324525466674	0.681998696082881	0.168117445025574	0.898273500955219	2.41403251867741	0.233197466240661	1
Merged-chr11-37136614-4	chr11	37136516	37136716	+	915.94165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-192375.0	NM_011856	23964.0	Mm.439889	NM_011856	ENSMUSG00000049336	Tenm2	Odz2|Odz3|Ten-2|Ten-m2	teneurin transmembrane protein 2	protein-coding	3.29433848099886	3.7775160253393	3.4021242242888	2.99575421710448	3.77251470598938	3.54804363474966	4.60120192931751	2.88974541774095	0.679203869197032	0.237393097280204	0.733870588171069
Merged-chr5-123993399-2	chr5	123993323	123993523	+	578.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145070, intron 7 of 31)	intron (NM_145070, intron 7 of 31)	-3429.0	NR_105999	102465625.0		NR_105999	ENSMUSG00000098454	Mir7032	Gm27309|mmu-mir-7032	microRNA 7032	ncRNA	0.181554162156547	-0.861895365881129	-0.866406756919111	-0.869761916804914	-0.874554827449296	-0.86079251341152	-0.865453058543122	-0.869173624362318	-3.55695249934736	0.23105918505856	1
Merged-chr13-34993692-3	chr13	34993553	34993753	+	918.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110331, intron 1 of 9)	intron (NM_001110331, intron 1 of 9)	491.0	NM_011868	23986.0	Mm.491141	NM_011868	ENSMUSG00000021417	Eci2	Acbd2|Drs1|Hca88|Peci	enoyl-Coenzyme A delta isomerase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-29622672-2	chr2	29622572	29622772	+	884.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_054050, intron 1 of 23)	intron (NM_054050, intron 1 of 23)	2952.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-161398409-2	chr1	161398309	161398509	+	604.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009452, intron 1 of 2)	intron (NM_009452, intron 1 of 2)	2971.0	NM_009452	22164.0	Mm.4994	NM_009452	ENSMUSG00000026700	Tnfsf4	Ath-1|Ath1|CD134L|OX-40L|Ox40l|TXGP1|Tnlg2b|Txgp1l|gp34	tumor necrosis factor (ligand) superfamily, member 4	protein-coding	-0.691083465312226	-0.860198692527461	-1.04764717552109	-1.05201436718904	-1.05468676440987	-0.857771329306564	-1.04511145217591	-1.05168312956829	-1.55020921912359	0.601893970882712	1
Merged-chr3-89391167-3	chr3	89391039	89391239	+	703.1190190000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040403)	promoter-TSS (NR_040403)	-725.0	NR_040403	545539.0	Mm.393389	NR_040403	ENSMUSG00000074466	Gm15417	-	predicted gene 15417	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-85597174-2	chr9	85597074	85597274	+	754.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	152160.0	NM_001081282	108837.0	Mm.22315	NM_175371	ENSMUSG00000035941	Ibtk	5430411K16Rik|AA409502|BTKI|mKIAA1417	inhibitor of Bruton agammaglobulinemia tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-66458148-3	chr18	66458053	66458253	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021451)	promoter-TSS (NM_021451)	-451.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-123515790-4	chr3	123515712	123515912	+	743.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7476.0	NR_028574	69895.0	Mm.260791	NR_028574	ENSMUSG00000104960	Snhg8	1110065M07Rik|2010109N14Rik	small nucleolar RNA host gene 8	ncRNA	2.24384970544289	2.358950396631	2.44265489070114	3.20194847674843	3.06533591136814	3.82119652009488	2.85845113931291	2.87366245741379	1.05939774886915	0.130368041468979	0.56544727863238
Merged-chr3-22074891-2	chr3	22074791	22074991	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1761.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32290738-2	chr2	32290638	32290838	+	557.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080968, intron 1 of 25)	intron (NM_001080968, intron 1 of 25)	2485.0	NM_001080968	99412.0	Mm.106376	NM_133852	ENSMUSG00000002546	Golga2	AW555139|GM130|mKIAA4150	golgi autoantigen, golgin subfamily a, 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-117132930-2	chr4	117132830	117133030	+	966.666626	f1_balb.idr|f1_c57bl6.idr	exon (NM_013807, exon 4 of 15)	exon (NM_013807, exon 4 of 15)	1033.0	NM_013807	12795.0	Mm.259022	NM_013807	ENSMUSG00000028680	Plk3	Cnk|Fnk|PLK-3|PRK	polo like kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-77381771-3	chr11	77381678	77381878	+	898.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291190, intron 1 of 13)	intron (NM_001291190, intron 1 of 13)	33498.0	NM_001291190	237860.0	Mm.440381	NM_177710	ENSMUSG00000037926	Ssh2	SSH-2|SSH-2L|mSSH-2L	slingshot protein phosphatase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33963889-4	chr16	33963782	33963982	+	985.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009471, exon 2 of 6)	exon (NM_009471, exon 2 of 6)	3156.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4301007-2	chr19	4300907	4301107	+	876.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290818, intron 1 of 20)	intron (NM_001290818, intron 1 of 20)	5215.0	NM_130863	110355.0	Mm.254144	NM_130863	ENSMUSG00000024858	Grk2	Adrbk-1|Adrbk1|Bark-1|beta ARK|betaARK1	G protein-coupled receptor kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30092638-2	chr2	30092538	30092738	+	917.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037762, intron 1 of 4)	intron (NM_001037762, intron 1 of 4)	997.0	NM_025428	66220.0	Mm.22538	NM_025428	ENSMUSG00000015335	Zdhhc12	1190004A01Rik	zinc finger, DHHC domain containing 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-145675096-2	chr3	145674996	145675196	+	570.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25111.0	NM_010516	16007.0	Mm.1231	NM_010516	ENSMUSG00000028195	Cyr61	AI325051|CCN1|Igfbp10	cysteine rich protein 61	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-8609346-3	chr11	8609268	8609468	+	749.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 2 of 30)	intron (NM_001083587, intron 2 of 30)	55167.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-141018016-2	chr5	141017916	141018116	+	957.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17420.0	NM_175362	108723.0	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-118269172-4	chr5	118269067	118269267	+	836.799988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23940.0	NM_001081236	76792.0	Mm.103428	NM_001081236	ENSMUSG00000032840	2410131K14Rik	-	RIKEN cDNA 2410131K14 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-137951006-2	chr3	137950906	137951106	+	697.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011932, intron 3 of 8)	L2a|LINE|L2	30543.0	NM_001310753	26377.0	Mm.254835	NM_011932	ENSMUSG00000028159	Dapp1	Bam32	dual adaptor for phosphotyrosine and 3-phosphoinositides 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117224817-4	chr8	117224741	117224941	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32178.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180264575-2	chr1	180264475	180264675	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8275.0	NM_001128605	19165.0	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-64266309-4	chr13	64266189	64266389	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045798, intron 1 of 2)	intron (NR_045798, intron 1 of 2)	8699.0	NM_172587	218294.0	Mm.25335	NM_172587	ENSMUSG00000033102	Cdc14b	2810432N10Rik|A530086E13Rik|AA472821|CDC14B3|Cdc14B1	CDC14 cell division cycle 14B	protein-coding	4.08903049558095	3.9056806819079	1.85725541032889	3.35742339071035	2.78274591003658	3.14218207657168	1.87405388108975	3.03614687673113	-1.2110205766284	0.10097131164371	0.494605524129516
Merged-chr11-8983459-2	chr11	8983359	8983559	+	598.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27732.0	NM_001303610	15574.0	Mm.42201	NM_008316	ENSMUSG00000020413	Hus1	-	HUS1 checkpoint clamp component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-94874462-4	chr8	94874343	94874543	+	832.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053246, intron 1 of 8)	intron (NM_053246, intron 1 of 8)	1869.0	NM_053246	114255.0	Mm.203949	NM_053246	ENSMUSG00000040631	Dok4	-	docking protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-123235684-4	chr8	123235595	123235795	+	804.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001357300, exon 1 of 2)	exon (NM_001357300, exon 1 of 2)	563.0	NM_001357301	78779.0	Mm.41459	NM_030176	ENSMUSG00000033594	Spata2l	2610039E05Rik|AI648233	spermatogenesis associated 2-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-21951834-4	chr3	21951742	21951942	+	868.5166630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11A|LTR|ERVK	-124810.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-10787343-2	chr16	10787243	10787443	+	916.25	f1_balb.idr|f1_c57bl6.idr	TTS (NM_013694)	TTS (NM_013694)	1312.0	NM_013694	21959.0	Mm.206798	NM_013694	ENSMUSG00000043050	Tnp2	TP2|Tp-2	transition protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-106336144-2	chr8	106336044	106336244	+	717.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_126090)	TTS (NR_126090)	1844.0	NM_021491	58994.0	Mm.23298	NM_021491	ENSMUSG00000031906	Smpd3	4631433G07Rik|AI427456|AW537966|fro|nSMase2	sphingomyelin phosphodiesterase 3, neutral	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-178342773-4	chr1	178342699	178342899	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT2B3|LTR|ERVL	-4984.0	NR_149827	51810.0	Mm.86589	NM_016805	ENSMUSG00000039630	Hnrnpu	AA408410|AI256620|AL024194|AL024437|AW557595|C86794|Hnrpu|SAFA|Sp120|hnRNP U	heterogeneous nuclear ribonucleoprotein U	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-50542850-2	chr16	50542750	50542950	+	568.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_040379, intron 4 of 5)	intron (NR_040379, intron 4 of 5)	14348.0	NR_040379	619312.0	Mm.427671	NR_040379		G730013B05Rik	linc-Cblb|linc1610	RIKEN cDNA G730013B05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-44780993-4	chr18	44780879	44781079	+	902.116699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085373, intron 1 of 18)	intron (NM_001085373, intron 1 of 18)	31203.0	NM_001085373	328949.0	Mm.312511	NM_001033406	ENSMUSG00000071856	Mcc	D18Ertd451e|E330037C19	mutated in colorectal cancers	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122668255-1	chr5	122668155	122668355	+	767.0	f1_c57bl6.idr	intron (NM_001038845, intron 8 of 12)	MER5A|DNA|hAT-Charlie	-14342.0	NR_106195	102465902.0		NR_106195	ENSMUSG00000099324	Mir8115	Gm28012|mmu-mir-8115	microRNA 8115	ncRNA	1.30895531086499	1.51880132778677	1.24531344478115	1.08303189071632	0.761658747618495	0.628924539227592	0.618092459441367	0.608760121494524	-3.94486935782228	0.0138529655761032	0.137513415043094
Merged-chr15-73426163-4	chr15	73426062	73426262	+	726.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2971.0	NM_001358045	14083.0	Mm.254494	NM_007982	ENSMUSG00000022607	Ptk2	FADK 1|FAK|FRNK|Fadk|p125FAK	PTK2 protein tyrosine kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-58111246-4	chr2	58111149	58111349	+	896.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	48873.0	NM_139200	227929.0	Mm.273905	NM_139200	ENSMUSG00000026832	Cytip	A130053M09Rik|AI462064|C80816|Cbp|Cybr|Pscdbp	cytohesin 1 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-79623754-4	chr11	79623665	79623865	+	997.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_003283)	promoter-TSS (NR_003283)	-602.0	NR_003283	790912.0	Mm.447313	NR_003283	ENSMUSG00000087434	Rab11fip4os1	Gm11202	RAB11 family interacting protein 4 (class II), opposite strand 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-101956064-2	chr5	101955964	101956164	+	833.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 7 of 66)	ID_B1|SINE|B4	113857.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-181739511-4	chr2	181739419	181739619	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-23813.0	NM_001171615	17932.0	Mm.458718	NM_008665	ENSMUSG00000010505	Myt1	Nzf2|Nzf2a|Nzf2b|Nztf2	myelin transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-138125465-3	chr1	138125368	138125568	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111316, intron 2 of 31)	intron (NM_001111316, intron 2 of 31)	49658.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-81916269-4	chr18	81916153	81916353	+	856.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	75827.0	NR_039589	100628596.0		NR_039589	ENSMUSG00000093036	Mir5127	mmu-mir-5127|mu-mir-5127	microRNA 5127	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-47222293-1	chr19	47222193	47222393	+	597.0	f1_c57bl6.idr	intron (NM_021360, intron 1 of 5)	intron (NM_021360, intron 1 of 5)	-6550.0	NM_001163480	18011.0	Mm.313651	NM_021360	ENSMUSG00000006435	Neurl1a	2410129E16Rik|AI450910|AI481072|Neu1|Neur1|Neurl|Neurl1|Nlz|Rnf67	neuralized E3 ubiquitin protein ligase 1A	protein-coding	-1.50561175621786	-1.47331375025452	-1.02203377115094	-1.49110398925286	-1.50334449591826	-1.47119716082604	-1.48086985756939	-1.48966786617048	-2.07776723614574	0.550394407909386	1
Merged-chr8-125734972-2	chr8	125734872	125735072	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025636, intron 1 of 4)	intron (NM_025636, intron 1 of 4)	769.0	NM_001310688	66566.0	Mm.25296	NM_025636	ENSMUSG00000031851	Ntpcr	2310079N02Rik|AI449709	nucleoside-triphosphatase, cancer-related	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-24596480-4	chr15	24596389	24596589	+	682.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	817275.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-13094084-2	chr8	13093984	13094184	+	772.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178708, intron 6 of 13)	intron (NM_178708, intron 6 of 13)	11259.0	NM_178708	234069.0	Mm.103427	NM_178708	ENSMUSG00000038542	Pcid2	A730042J05Rik	PCI domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120782085-2	chr11	120781985	120782185	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009053, intron 6 of 7)	intron (NM_009053, intron 6 of 7)	2119.0	NM_009053	19719.0	Mm.871	NM_009053	ENSMUSG00000025158	Rfng	-	RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-82140106-3	chr11	82139991	82140191	+	721.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24906.0	NM_021443	20307.0	Mm.42029	NM_021443	ENSMUSG00000009185	Ccl8	1810063B20Rik|AB023418|HC14|MCP-2|Mcp2|Scya8	chemokine (C-C motif) ligand 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129060130-4	chr4	129060032	129060232	+	995.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029219, intron 1 of 8)	intron (NM_029219, intron 1 of 8)	1861.0	NM_029219	75234.0	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-113491109-1	chr13	113491009	113491209	+	604.0	f0_c57.idr	intron (NR_045501, intron 1 of 6)	intron (NR_045501, intron 1 of 6)	11735.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-111066568-4	chr11	111066480	111066680	+	955.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008425, intron 1 of 1)	intron (NM_008425, intron 1 of 1)	416.0	NM_008425	16518.0	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding	-1.84362945061595	-1.81329140012928	-1.67810947190254	-1.83000206547234	-1.84149977556685	-1.81130325271815	-1.67603257143677	-1.82865309133977	0.037684011990387	0.991491645451152	1
Merged-chr2-118164287-2	chr2	118164187	118164387	+	631.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52411.0	NM_001313914	21825.0	Mm.4159	NM_011580	ENSMUSG00000040152	Thbs1	TSP-1|TSP1|Thbs-1|tbsp1	thrombospondin 1	protein-coding	0.212971739654069	0.0957305514911098	0.515707777613378	0.0870193976230215	0.334222754750836	0.433699163164141	0.524756179990562	0.0876796511590724	0.884647029092108	0.651317073697532	1
Merged-chr11-115639951-2	chr11	115639851	115640051	+	855.916626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-11656.0	NM_001252395	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-22035140-4	chr13	22035029	22035229	+	845.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175665)	promoter-TSS (NM_175665)	514.0	NM_175659	319168.0	Mm.250564	NM_175659	ENSMUSG00000069302	Hist1h2ah	-	histone cluster 1, H2ah	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-65931567-1	chr3	65931467	65931667	+	830.666687	f1_balb.idr	Intergenic	RLTR11A2|LTR|ERVK	26682.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	0.896438221378132	1.34261897620351	1.53767169260286	0.736715180059736	0.902737826633309	1.72784676704192	1.55231508449916	0.738683389784828	0.495860394237797	0.724667840412864	0.998431161219273
Merged-chr5-92127450-4	chr5	92127341	92127541	+	881.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359197, intron 1 of 10)	intron (NM_001359197, intron 1 of 10)	10284.0	NM_001359197	23881.0	Mm.290530	NM_011816	ENSMUSG00000029405	G3bp2	AA409541|E430034L04Rik|G3BP|mKIAA0660	GTPase activating protein (SH3 domain) binding protein 2	protein-coding	0.87909632228024	0.732603860948138	1.46033985447246	0.700176230156875	0.679236917346484	2.16500468344309	1.71553541579597	1.279919479377	2.10718360696739	0.14183526321368	0.587744950932814
Merged-chr11-100737354-4	chr11	100737267	100737467	+	887.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305003, intron 1 of 5)	intron (NM_001305003, intron 1 of 5)	848.0	NM_024456	19345.0	Mm.29829	NM_024456	ENSMUSG00000019173	Rab5c	AI326010|Rabl	RAB5C, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-41810068-4	chr10	41809986	41810186	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001243075)	promoter-TSS (NM_001243075)	-218.0	NM_026643	103268.0	Mm.338605	NM_026643	ENSMUSG00000019813	Cep57l1	2410017P07Rik|4930484D11Rik|AI607327|cep57R	centrosomal protein 57-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129601228-5	chr2	129601044	129601244	+	894.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355160, intron 1 of 7)	intron (NM_001355160, intron 1 of 7)	5682.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	2.11822382698585	3.15606455142077	3.05156392062941	3.28194881791137	2.28706298551956	3.27065546011185	2.87235627535123	3.06940932130622	-0.0950617808800334	0.89185549313371	0.998431161219273
Merged-chr11-75415292-4	chr11	75415100	75415300	+	692.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011340, intron 4 of 7)	intron (NM_011340, intron 4 of 7)	7423.0	NM_011340	20317.0	Mm.2044	NM_011340	ENSMUSG00000000753	Serpinf1	AI195227|EPC-1|Pedf|Pedfl|Sdf3	serine (or cysteine) peptidase inhibitor, clade F, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-45864690-4	chr1	45864584	45864784	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60910.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-10953027-1	chr4	10952927	10953127	+	550.0	f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	54592.0	NM_175175	71801.0	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	1.38811580969046	0.84171907006057	1.12073390308689	1.08238873929456	0.595223975763407	0.629122882314878	0.618233419067328	1.49609297559616	-0.905301477156324	0.565193317046322	0.961416269081537
Merged-chr13-6690224-1	chr13	6690124	6690324	+	564.0	f0_balb.idr	Intergenic	RMER1A|Other|Other	-41453.0	NM_001291071	56421.0	Mm.273874	NM_019703	ENSMUSG00000021196	Pfkp	1200015H23Rik|9330125N24Rik|ATP-PFK|PFK-C|PFK-P	phosphofructokinase, platelet	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-123283795-4	chr4	123283570	123283770	+	957.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001356377, exon 1 of 14)	exon (NM_001356377, exon 1 of 14)	759.0	NM_130881	230721.0	Mm.277091	NM_130881	ENSMUSG00000011257	Pabpc4	-	poly(A) binding protein, cytoplasmic 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96759871-4	chr3	96759774	96759974	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026406, intron 3 of 8)	intron (NM_026406, intron 3 of 8)	32263.0	NM_026406	67845.0	Mm.386792	NM_026406	ENSMUSG00000028098	Rnf115	2610028E05Rik|AU042696|Zfp364	ring finger protein 115	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-66337632-2	chr5	66337532	66337732	+	658.833313	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001201416)	promoter-TSS (NM_001201416)	33.0	NM_001201416	11787.0	Mm.5159	NM_009686	ENSMUSG00000029207	Apbb2	2310007D03Rik|FE65L1|Rirl1|TR2L|Zfra	amyloid beta (A4) precursor protein-binding, family B, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70633008-3	chr11	70632932	70633132	+	917.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MDa|LINE|L1	-6090.0	NM_010326	14723.0	Mm.377085	NM_010326	ENSMUSG00000050675	Gp1ba	GP-Ib alpha|GPIba|GPIbalpha	glycoprotein 1b, alpha polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123886601-4	chr5	123886499	123886699	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6579.0	NM_175520	243270.0	Mm.33362	NM_175520	ENSMUSG00000049241	Hcar1	Gpr81	hydrocarboxylic acid receptor 1	protein-coding	5.07209832293858	5.84759477436746	4.77327446437501	5.75681222989286	5.74800974994908	5.51549702844406	6.21303647559543	5.04123382473151	0.297961157925066	0.370363535924072	0.863727598865104
Merged-chr11-79251068-4	chr11	79250958	79251158	+	917.216675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_019653, exon 2 of 9)	exon (NM_019653, exon 2 of 9)	3637.0	NM_019653	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-105006966-2	chr5	105006867	105007067	+	817.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24250.0	NM_030239	27405.0	Mm.389663	NM_030239	ENSMUSG00000029299	Abcg3	Abcp2|Mxr2	ATP binding cassette subfamily G member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-16969276-2	chr11	16969176	16969376	+	571.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	17866.0	NM_176982	319701.0	Mm.120672	NM_176982	ENSMUSG00000044966	Fbxo48	A630050E13Rik	F-box protein 48	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-49220114-2	chr13	49220014	49220214	+	861.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4088.0	NM_026738	68480.0	Mm.3336	NM_026738	ENSMUSG00000037960	Card19	1110007C09Rik|AI851695|Bincard	caspase recruitment domain family, member 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-28029442-2	chr15	28029342	28029542	+	757.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3594.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-44757913-4	chr16	44757815	44758015	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-7821.0	NM_021325	57781.0	Mm.416152	NM_021325	ENSMUSG00000022667	Cd200r1	CD200R|Mox2r|OX2R	CD200 receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-155538422-1	chr2	155538322	155538522	+	589.333313	f0_c57.idr	intron (NM_019811, intron 2 of 17)	(TG)n|Simple_repeat|Simple_repeat	18508.0	NR_040613	74945.0	Mm.401956	NR_040613	ENSMUSG00000086529	Acss2os	4930471I20Rik	acyl-CoA synthetase short-chain family member 2, opposite strand	ncRNA	-1.58994551673671	-1.55912852307891	-1.56844783632235	-1.57610299769523	-1.18549093183599	-1.55710898902261	-1.56633814807757	-1.57473272746952	1.78703309985663	0.610309988231842	1
Merged-chr16-32189285-4	chr16	32189179	32189379	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	9479.0	NM_001033539	328660.0	Mm.441006	NM_001033539	ENSMUSG00000075269	Bex6	B020003O03Rik	brain expressed family member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-48322329-3	chr4	48322219	48322419	+	761.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010569, intron 3 of 16)	L2c|LINE|L2	42559.0	NM_001281977	16348.0	Mm.317706	NM_010569	ENSMUSG00000028344	Invs	Nphp2|inv	inversin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-77840690-4	chr15	77840599	77840799	+	988.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022410, intron 1 of 40)	U6|snRNA|snRNA	1476.0	NM_022410	17886.0	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-90045789-3	chr16	90045689	90045889	+	766.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-71090.0	NM_001145886	21844.0	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-24657054-1	chr12	24656954	24657154	+	548.0	f1_c57bl6.idr	intron (NM_178357, intron 3 of 3)	intron (NM_178357, intron 3 of 3)	5683.0	NM_178357	194655.0	Mm.9616	NM_178357	ENSMUSG00000020653	Klf11	9830142A17|D12Ertd427e|Tieg2|Tieg2b|Tieg3	Kruppel-like factor 11	protein-coding	0.116052442603615	0.678075655976996	0.12499549018083	0.753657393093554	0.116874783145744	0.455182666404959	0.125967654131613	0.122200897838513	-2.27008255889188	0.308846549832545	1
Merged-chr11-44439344-2	chr11	44439252	44439452	+	774.25	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	31196.0	NM_024475	79560.0	Mm.338784	NM_024475	ENSMUSG00000041231	Ublcp1	4930527B16Rik|8430435I17Rik|BC002236	ubiquitin-like domain containing CTD phosphatase 1	protein-coding	3.37097452539595	3.28478843073647	3.46574822276901	3.54719366149053	1.84779983508619	2.09825496156277	1.49331057275123	2.82294007927002	-2.33642962143873	0.00172895383899165	0.0300347318922131
Merged-chr4-108347239-4	chr4	108347131	108347331	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19079.0	NM_027250	69893.0	Mm.28354	NM_027250	ENSMUSG00000048351	Coa7	2010305A19Rik|AI451324|D4Ertd796e|Selrc1	cytochrome c oxidase assembly factor 7	protein-coding	6.33473458455071	6.09084145206236	6.42141904357763	6.13597188061943	6.32371490309716	6.12711503502971	6.44408244929658	6.12592660199035	0.0093053909812242	0.964937524605343	0.998431161219273
Merged-chr19-37209148-4	chr19	37209065	37209265	+	949.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027314, intron 1 of 5)	intron (NM_027314, intron 1 of 5)	1620.0	NM_001164336	69104.0	Mm.175989	NM_027314	ENSMUSG00000023307	March5	1810015H18Rik|2310008I22Rik|2700055A20Rik|5730499H23Rik|E130202O05Rik|MARCH-V|MITOL|Marchv|Rnf153	membrane-associated ring finger (C3HC4) 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-53520754-4	chr11	53520653	53520853	+	850.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361969, intron 1 of 9)	intron (NM_001361969, intron 1 of 9)	565.0	NM_001361969	20362.0	Mm.274399	NM_033144	ENSMUSG00000018398	Sept8	AW046166|Sepl	septin 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114884898-4	chr11	114884812	114885012	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5129.0	NM_001347654	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-135605577-2	chr7	135605477	135605677	+	586.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001316679)	promoter-TSS (NM_001316679)	-251.0	NM_001316679	19267.0	Mm.945	NM_011212	ENSMUSG00000041836	Ptpre	PTPe|PTPepsilon|RPTPepsilon	protein tyrosine phosphatase, receptor type, E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-87657828-1	chr16	87657728	87657928	+	580.0	f1_balb.idr	Intergenic	Intergenic	-41126.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	-1.31349849087795	-1.28274354783242	-1.29349452597086	-1.3023256995151	-1.3130151546297	-1.28041376602105	-0.694015972326031	-1.30074492367298	2.57396649482007	0.456321314346772	1
Merged-chr7-30909037-4	chr7	30908943	30909143	+	967.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001346085, exon 5 of 11)	exon (NM_001346085, exon 5 of 11)	5278.0	NM_001346089	17136.0	Mm.241355	NM_010758	ENSMUSG00000036634	Mag	Gma|siglec-4a	myelin-associated glycoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-20332795-4	chr11	20332713	20332913	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018861)	promoter-TSS (NM_018861)	-100.0	NM_018861	55963.0	Mm.6379	NM_018861	ENSMUSG00000020142	Slc1a4	ASCT-1|ASCT1|AW045657|SATT	solute carrier family 1 (glutamate/neutral amino acid transporter), member 4	protein-coding	0.0547204578256301	0.0937033655576065	1.19669542674223	0.0715368665660651	0.0572674588409179	0.096440688064711	1.5504286334791	0.0732662166180993	0.695010900341288	0.83301749095519	0.998431161219273
Merged-chr9-32507713-4	chr9	32507600	32507800	+	963.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008026, intron 1 of 8)	intron (NM_008026, intron 1 of 8)	33752.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-45049476-4	chr2	45049388	45049588	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355291, intron 2 of 9)	intron (NM_001355291, intron 2 of 9)	-26311.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-51848073-4	chr12	51847917	51848117	+	876.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18481.0	NM_144788	207304.0	Mm.249391	NM_144788	ENSMUSG00000035247	Hectd1	A630086P08Rik|AI844876|b2b327Clo|opm	HECT domain E3 ubiquitin protein ligase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-87358995-4	chr11	87358920	87359120	+	762.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177167)	promoter-TSS (NM_177167)	-26.0	NM_177167	320472.0	Mm.341988	NM_177167	ENSMUSG00000046442	Ppm1e	AW049266|B930008A12Rik|POPX1|PP2CH|mKIAA1072	protein phosphatase 1E (PP2C domain containing)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-96637181-2	chr10	96637081	96637281	+	606.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20180.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-55285471-1	chr9	55285371	55285571	+	601.75	f0_balb.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-1846.0	NM_032002	83961.0	Mm.443874	NM_032002	ENSMUSG00000032311	Nrg4	AI552600	neuregulin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-172126721-4	chr1	172126612	172126812	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159525)	promoter-TSS (NM_001159525)	-43.0	NM_001356513	19298.0	Mm.247764	NM_023041	ENSMUSG00000003464	Pex19	Pxf	peroxisomal biogenesis factor 19	protein-coding	4.79076668752044	4.99122185447782	5.7405141995184	5.30610567549812	4.9273137069456	5.06887118715407	5.32138050953426	5.67721849387782	0.0312342672788883	0.923836423735635	0.998431161219273
Merged-chr2-166684237-4	chr2	166684101	166684301	+	984.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	29631.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56258895-2	chr17	56258795	56258995	+	652.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010192, exon 1 of 1)	3' UTR (NM_010192, exon 1 of 1)	2102.0	NM_010192	14154.0	Mm.290813	NM_010192	ENSMUSG00000043683	Fem1a	AW611390|Fem1aa	feminization 1 homolog a (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135301354-2	chr4	135301254	135301454	+	921.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28594.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-31602195-4	chr15	31602079	31602279	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007637)	promoter-TSS (NM_007637)	63.0	NM_001356313	68073.0	Mm.119185	NM_026546	ENSMUSG00000039065	Fam173b	A930016P21Rik|AA987072	family with sequence similarity 173, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-57576268-2	chr16	57576168	57576368	+	556.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_025599, intron 1 of 9)	L1_Mur2|LINE|L1	27026.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-138521082-4	chr3	138520990	138521190	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5101.0	NM_007917	13684.0	Mm.3941	NM_007917	ENSMUSG00000028156	Eif4e	EG668879|Eif4e-ps|If4e|eIF-4E	eukaryotic translation initiation factor 4E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-183671446-4	chr1	183671338	183671538	+	947.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-77539.0	NR_151520	102637191.0	Mm.417076	NR_151520	ENSMUSG00000103305	Gm34068	-	predicted gene, 34068	ncRNA	0.491917764887809	0.724945041122837	0.252033490831204	0.534970030181588	0.697829742533987	0.60063026868462	0.253291939828566	0.248405198277457	-0.287804137409419	0.875690545724675	1
Merged-chr8-79550208-2	chr8	79550108	79550308	+	552.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-89468.0	NM_001256033	73945.0	Mm.34348	NM_001081164	ENSMUSG00000036990	Otud4	4930431L18Rik|AI449692|D8Ertd69e|mKIAA1046	OTU domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122375780-2	chr8	122375680	122375880	+	866.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310650)	promoter-TSS (NM_001310650)	-829.0	NM_001310650	76014.0	Mm.241489	NM_001029993	ENSMUSG00000017478	Zc3h18	1190001B23Rik|5830416A07Rik|Nhn1	zinc finger CCCH-type containing 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-108638921-2	chr4	108638821	108639021	+	939.833374	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_183300, exon 16 of 16)	3' UTR (NM_183300, exon 16 of 16)	18965.0	NM_177045	319965.0	Mm.151129	NM_177045	ENSMUSG00000028582	Cc2d1b	A830039B04Rik|Freud2	coiled-coil and C2 domain containing 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-82812019-4	chr10	82811919	82812119	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_038042)	promoter-TSS (NR_038042)	-104.0	NR_038042	70003.0	Mm.48789	NR_038042	ENSMUSG00000056821	1700028I16Rik	-	RIKEN cDNA 1700028I16 gene	ncRNA	1.99680647046362	0.908028960810892	2.01144979573446	0.867319008040572	0.840768402048973	0.913017364645386	2.02996312958522	2.2148206001372	0.24204236367159	0.86447942411314	0.998431161219273
Merged-chr1-60860732-3	chr1	60860607	60860807	+	840.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48318.0	NM_009843	12477.0	Mm.390	NM_009843	ENSMUSG00000026011	Ctla4	Cd152|Ctla-4|Ly-56	cytotoxic T-lymphocyte-associated protein 4	protein-coding	1.35612995238629	1.78319002097633	1.59598809523715	1.78418034055396	1.88321607366455	1.66044959751154	1.28710074221659	1.42167644998541	-0.173031598311612	0.873502184747209	0.998431161219273
Merged-chr10-80939879-4	chr10	80939783	80939983	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9792.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117068745-2	chr8	117068645	117068845	+	766.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029686, intron 5 of 42)	intron (NM_029686, intron 5 of 42)	13704.0	NM_029686	76645.0	Mm.159753	NM_029686	ENSMUSG00000034416	Pkd1l2	1700126L06Rik	polycystic kidney disease 1 like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-88239677-3	chr1	88239580	88239780	+	822.977783	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001281466, intron 15 of 41)	intron (NM_001281466, intron 15 of 41)	12660.0	NM_001281466	100040766.0	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	Heatr7b1	maestro heat-like repeat family member 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106615070-2	chr11	106614970	106615170	+	624.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	-2140.0	NM_198292	21763.0	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101322554-2	chr7	101322454	101322654	+	814.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_019990, intron 2 of 6)	intron (NM_019990, intron 2 of 6)	1441.0	NM_019990	56018.0	Mm.28896	NM_019990	ENSMUSG00000030688	Stard10	AV048538|CGI-52|NY-C0-28|PC-TP2|PCTP2|Pctpl|Sdccag28|SdccagG28|TISP-81	START domain containing 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-32659591-1	chr16	32659491	32659691	+	644.0	f1_c57bl6.idr	intron (NM_001110147, intron 1 of 13)	intron (NM_001110147, intron 1 of 13)	8606.0	NR_033493	675921.0	Mm.404316	NR_033493	ENSMUSG00000075265	Tnk2os	Gm10818	tyrosine kinase, non-receptor 2, opposite strand	ncRNA	0.230477978542927	0.254500702562942	1.1512671167702	0.420398846737187	0.649084073890044	0.256252108740528	0.870489162058222	0.241692918702157	-0.280842906770407	0.883333614859006	1
Merged-chr17-34747669-2	chr17	34747563	34747763	+	912.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	-3766.0	NM_009780	12268.0	Mm.477109	NM_009780	ENSMUSG00000073418	C4b	C4|Ss	complement component 4B (Chido blood group)	protein-coding	-0.76388850761616	-0.75195150047843	-0.755844616317042	-0.758859980133029	-0.763138668784214	-0.535360286004988	0.0764776927037795	-0.75833246370033	3.40712816763533	0.227258180662858	1
Merged-chr10-14034217-1	chr10	14034117	14034317	+	598.0	f0_balb.idr	intron (NM_001358783, intron 2 of 12)	intron (NM_001358783, intron 2 of 12)	67838.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	0.243485872274831	0.070508281262501	0.0581823918824261	0.0484086086345986	0.709491574201972	0.0732361127881453	1.73104692151159	0.0501333873924353	3.94503136241806	0.0434807373189034	0.299129521990942
Merged-chr16-43699062-1	chr16	43698962	43699162	+	542.0	f1_balb.idr	Intergenic	Intergenic	-34878.0	NM_001146325	100043314.0	Mm.390896	NM_001146325	ENSMUSG00000071552	Tigit	Vstm3	T cell immunoreceptor with Ig and ITIM domains	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24731175-2	chr17	24731075	24731275	+	594.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163945, intron 3 of 9)	intron (NM_001163945, intron 3 of 9)	-1510.0	NM_025425	66211.0	Mm.46198	NM_025425	ENSMUSG00000002500	Rpl3l	1110057H16Rik	ribosomal protein L3-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-102540676-1	chr7	102540576	102540776	+	585.0	f0_balb.idr	Intergenic	Intergenic	5927.0	NM_147079	259083.0	Mm.377828	NM_147079	ENSMUSG00000073979	Olfr547	MOR31-4	olfactory receptor 547	protein-coding	0.201306067638976	0.466909394427864	-0.268309840584	-0.271915558659491	-0.128016337342495	-0.262586216996248	-0.267279379268918	-0.271285523902265	-2.88819000609503	0.230670145511767	1
Merged-chr4-155418918-2	chr4	155418818	155419018	+	635.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001166029, exon 4 of 5)	exon (NM_001166029, exon 4 of 5)	2786.0	NR_102287	641454.0	Mm.150322	NR_102283	ENSMUSG00000084803	5830444B04Rik	-	RIKEN cDNA 5830444B04 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-92875955-4	chr8	92875852	92876052	+	999.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357375, intron 6 of 12)	intron (NM_001357375, intron 6 of 12)	20619.0	NM_001357374	270084.0	Mm.21463	NM_173014	ENSMUSG00000033192	Lpcat2	1-AGPAT 11|A330042H22|Aytl1|Aytl1a|lpafat1|lysoPAFAT|lysoPAFAT/LPCAT2	lysophosphatidylcholine acyltransferase 2	protein-coding	5.51286683395038	5.1875867478748	5.54740581780273	5.56026367141437	4.67658908662306	3.86760214318912	4.68552124086452	4.33820783665884	-1.22008999510647	0.000217468590263469	0.00575556208672301
Merged-chr9-21328247-4	chr9	21328153	21328353	+	911.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359227, intron 1 of 22)	intron (NM_001359227, intron 1 of 22)	7534.0	NM_001199186	68682.0	Mm.148425	NM_152808	ENSMUSG00000057193	Slc44a2	1110028E10Rik|CTL2	solute carrier family 44, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84815152-1	chr8	84815052	84815252	+	542.0	f1_balb.idr	TTS (NM_201227)	TTS (NM_201227)	7671.0	NM_201227	23863.0	Mm.304252	NM_201227	ENSMUSG00000053226	Dand5	Cerl-2|Cerl2|Cerr2|Dte|GREM3|coco	DAN domain family member 5, BMP antagonist	protein-coding	1.01893143898134	1.65459142746074	0.735642678890233	1.32966734111721	1.53539601489715	0.973162890021618	0.738386672560326	1.07947825417737	-0.4495377793615	0.750189506319464	0.998431161219273
Merged-chr15-102762037-2	chr15	102761937	102762137	+	696.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15128.0	NR_104334	102216269.0		NR_104334		Gm38436	Cistr|Cistr-act	predicted gene, 38436	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-76522640-4	chr5	76522520	76522720	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB2|LINE|L1	-6687.0	NM_001359372	69940.0	Mm.403233	NM_027270	ENSMUSG00000036435	Exoc1	2810407P21Rik|A730011E05Rik|SEC3|Sec3l1|Sec3p	exocyst complex component 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126918482-2	chr8	126918382	126918582	+	737.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	27439.0	NM_024214	67952.0	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-46171944-2	chr17	46171839	46172039	+	725.208374	f1_balb.idr|f1_c57bl6.idr	TTS (NM_030715)	TTS (NM_030715)	9875.0	NM_001357745	56055.0	Mm.22147	NM_019581	ENSMUSG00000023952	Gtpbp2	nmf205	GTP binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32588387-2	chr2	32588287	32588487	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011373, intron 1 of 4)	intron (NM_011373, intron 1 of 4)	1309.0	NM_011373	20448.0	Mm.27446	NM_011373	ENSMUSG00000079442	St6galnac4	SIAT7-D|ST6GalNAcIV|Siat7d	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-25093453-5	chr12	25093349	25093549	+	972.93335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010496)	TTS (NM_010496)	2643.0	NM_010496	15902.0	Mm.34871	NM_010496	ENSMUSG00000020644	Id2	AI255428|C78922|Idb2|bHLHb26	inhibitor of DNA binding 2	protein-coding	1.40753629926002	2.06343556153019	1.85354431340025	2.43964977388887	1.73207612702663	2.07846267025656	1.86728253840432	2.45233562201789	0.169168597122456	0.860507589561144	0.998431161219273
Merged-chr18-39517359-4	chr18	39517247	39517447	+	998.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30102.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-4233522-2	chr18	4233422	4233622	+	659.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	67690.0	NM_026092	67328.0	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-37613145-4	chr19	37613056	37613256	+	988.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175353, intron 18 of 21)	intron (NM_175353, intron 18 of 21)	62738.0	NM_175353	107371.0	Mm.24865	NM_175353	ENSMUSG00000053799	Exoc6	4833405E05Rik|AW413330|C430002C19|Sec15|Sec15l1|hbd|msec15	exocyst complex component 6	protein-coding	4.22136837775328	3.46485755935517	4.13853376528768	4.33828050133596	4.16614919947493	3.59947938625453	3.83072812977873	4.44707452236881	-0.0404381301652863	0.92973915179962	0.998431161219273
Merged-chr14-33217527-2	chr14	33217427	33217627	+	571.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153800, intron 2 of 10)	intron (NM_153800, intron 2 of 10)	704.0	NM_153800	239027.0	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46519391-2	chr19	46519291	46519491	+	795.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17743.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76900659-2	chr15	76900559	76900759	+	579.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_025536, exon 2 of 2)	exon (NM_025536, exon 2 of 2)	718.0	NM_025536	66398.0	Mm.291716	NM_025536	ENSMUSG00000055041	Commd5	2310065H03Rik|AI854466|D15Ertd81e|Hcarg	COMM domain containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-22708060-4	chr8	22707977	22708177	+	881.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1494.0	NM_001159774	16150.0	Mm.277886	NM_010546	ENSMUSG00000031537	Ikbkb	AI132552|IKK-2|IKK-beta|IKK2|IKK[b]|IKKbeta	inhibitor of kappaB kinase beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-56777625-4	chr14	56777528	56777728	+	897.474976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025682, intron 1 of 8)	CpG	690.0	NM_001360420	66645.0	Mm.20129	NM_025682	ENSMUSG00000021938	Pspc1	5730470C09Rik|AI327109|AI449052|PSP1	paraspeckle protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-32179941-4	chr4	32179856	32180056	+	899.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	215849.0	NM_172688	26409.0	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-70470653-2	chr12	70470553	70470753	+	759.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_037248, intron 2 of 4)	(CA)n|Simple_repeat|Simple_repeat	17499.0	NM_028339	72736.0	Mm.204670	NM_028339	ENSMUSG00000021072	Tmx1	2810425A04Rik|AI465319|Txndc1	thioredoxin-related transmembrane protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-8835466-2	chr16	8835366	8835566	+	645.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081400, intron 2 of 3)	RSINE1|SINE|B4	5366.0	NM_001081400	69053.0	Mm.390868	NM_001081400	ENSMUSG00000022507	1810013L24Rik	1110017P05Rik|3010002C02Rik|AA792997|AW124177|Gm19906|R74903	RIKEN cDNA 1810013L24 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-80953114-3	chr5	80952994	80953194	+	772.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-67477.0	NM_001347367	319387.0	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	-0.967614389941893	-0.95065899954647	-0.778751349701761	-0.319491032812572	-0.967052112592328	-0.947983627257925	-0.960209930798189	-0.963435479298918	-2.96624354227483	0.331776592034863	1
Merged-chr2-25055317-2	chr2	25055217	25055417	+	699.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039386, intron 2 of 15)	intron (NM_001039386, intron 2 of 15)	938.0	NM_001177655	56876.0	Mm.42956	NM_020276	ENSMUSG00000006476	Nsmf	Jacob|Nelf	NMDA receptor synaptonuclear signaling and neuronal migration factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-74664768-1	chr16	74664668	74664868	+	577.0	f1_balb.idr	intron (NM_001358493, intron 1 of 28)	intron (NM_001358493, intron 1 of 28)	-252943.0	NM_175549	268902.0	Mm.171736	NM_175549	ENSMUSG00000052516	Robo2	2600013A04Rik|9430089E08Rik|BB097918|D230004I22Rik|mKIAA1568	roundabout guidance receptor 2	protein-coding	-1.84303373260285	-1.81303463126392	-1.82210660711932	-1.82955859819738	-1.84092785115721	-1.81106869625141	-1.8200529106377	-1.54273750312762	1.50114612804783	0.670102668014672	1
Merged-chr10-79932893-2	chr10	79932793	79932993	+	557.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001288625, intron 3 of 8)	intron (NM_001288625, intron 3 of 8)	5552.0	NM_001288625	13496.0	Mm.301282	NM_007880	ENSMUSG00000019564	Arid3a	Bright|Dri1|Dril1	AT rich interactive domain 3A (BRIGHT-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70576971-4	chr14	70576875	70577075	+	981.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360475)	promoter-TSS (NM_001360475)	-849.0	NM_153136	213484.0	Mm.34191	NM_153136	ENSMUSG00000045211	Nudt18	BC036718	nudix (nucleoside diphosphate linked moiety X)-type motif 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-44283568-2	chr2	44283468	44283668	+	569.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301831, intron 12 of 14)	MTEa|LTR|ERVL-MaLR	-218244.0	NR_040622	320872.0	Mm.445023	NR_040622	ENSMUSG00000085089	Arhgap15os	A430092G05Rik	Rho GTPase activating protein 15, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-53758840-2	chr11	53758740	53758940	+	947.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4814.0	NR_106131	102465772.0		NR_106131	ENSMUSG00000099153	Mir7671	Gm27802|mmu-mir-7671	microRNA 7671	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-128698559-5	chr4	128698393	128698593	+	795.200012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018774, intron 1 of 14)	intron (NM_018774, intron 1 of 14)	9755.0	NM_018774	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-103372764-2	chr11	103372607	103372807	+	857.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_183034, intron 8 of 11)	intron (NM_183034, intron 8 of 11)	-9015.0	NM_001205236	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	-0.0337981959477374	0.87306828702727	-0.0198257934884783	0.66340477326332	-0.0324908860315384	0.20590483945421	-0.0183381243423442	-0.0241354409164258	-3.26865838036016	0.137480562032188	1
Merged-chr12-34591908-4	chr12	34591812	34592012	+	769.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271386, intron 3 of 27)	RCHARR1|DNA|hAT-Charlie	-63023.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102389587-2	chr12	102389487	102389687	+	876.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177620, intron 9 of 9)	intron (NM_177620, intron 9 of 9)	50226.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-103384442-1	chr11	103384342	103384542	+	554.0	f1_balb.idr	intron (NM_183034, intron 5 of 11)	intron (NM_183034, intron 5 of 11)	-20750.0	NM_001205236	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	-1.58994551673671	-1.55912852307891	-1.56844783632235	-1.57610299769523	-1.18549093183599	-1.55710898902261	-1.56633814807757	-1.57473272746952	1.78703309985663	0.610309988231842	1
Merged-chr10-81576628-2	chr10	81576528	81576728	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001252401, exon 4 of 20)	exon (NM_001252401, exon 4 of 20)	1341.0	NM_001252401	21886.0	Mm.38608	NM_019725	ENSMUSG00000034771	Tle2	Grg2|mKIAA4188	transducin-like enhancer of split 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-16145809-1	chr12	16145709	16145909	+	716.0	f0_balb.idr	Intergenic	Intergenic	-329024.0	NM_144551	217410.0	Mm.491136	NM_144551	ENSMUSG00000020601	Trib2	AW319517|TRB-2|TRB2	tribbles pseudokinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-115612781-2	chr4	115612681	115612881	+	601.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001100181, intron 9 of 12)	L1_Mus3|LINE|L1	11843.0	NM_001100181	100040843.0	Mm.482683	NM_001100181	ENSMUSG00000063929	Cyp4a32	-	cytochrome P450, family 4, subfamily a, polypeptide 32	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-9745085-4	chr1	9744983	9745183	+	926.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173443, intron 1 of 2)	intron (NM_173443, intron 1 of 2)	-2565.0	NR_040462	73331.0	Mm.460470	NR_040462		1700034P13Rik	-	RIKEN cDNA 1700034P13 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-85248677-1	chr1	85248577	85248777	+	703.0	f1_balb.idr	intron (NM_175219, intron 6 of 7)	intron (NM_175219, intron 6 of 7)	21889.0	NM_175219	620078.0	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik	RIKEN cDNA C130026I21 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80536246-2	chr10	80536146	80536346	+	761.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026094, intron 3 of 27)	intron (NM_026094, intron 3 of 27)	2878.0	NM_026094	67331.0	Mm.52511	NM_026094	ENSMUSG00000003341	Atp8b3	1700042F02Rik|1700056N23Rik|ATPIK|SAPLT	ATPase, class I, type 8B, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-8423511-3	chr5	8423398	8423598	+	718.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001190717)	promoter-TSS (NM_001190717)	660.0	NM_178766	319653.0	Mm.146262	NM_178766	ENSMUSG00000054099	Slc25a40	B230315F11Rik	solute carrier family 25, member 40	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-47900732-4	chr19	47900667	47900867	+	956.866699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001738, intron 1 of 1)	intron (NM_001001738, intron 1 of 1)	18532.0	NM_001001738	414801.0	Mm.29457	NM_001001738	ENSMUSG00000044948	Itprip	4833424O12Rik|DANGER	inositol 1,4,5-triphosphate receptor interacting protein	protein-coding	1.60840974717494	1.29924581841083	2.08287545919463	2.47902613132801	1.62171582504304	3.08065207069251	2.23890270947574	2.66627567310495	1.25762891547524	0.189866984483522	0.668558565029891
Merged-chr10-39613175-4	chr10	39613127	39613327	+	976.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_134000, exon 1 of 9)	5' UTR (NM_134000, exon 1 of 9)	293.0	NM_134000	103213.0	Mm.436686	NM_134000	ENSMUSG00000019842	Traf3ip2	AI429613|Act1|CIKS	TRAF3 interacting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-60437954-4	chr3	60437912	60438112	+	847.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34818.0	NM_001253713	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166701355-2	chr2	166701255	166701455	+	780.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	12477.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-3908401-1	chr13	3908301	3908501	+	640.0	f0_balb.idr	intron (NM_019671, intron 2 of 11)	intron (NM_019671, intron 2 of 11)	9819.0	NM_019671	56349.0	Mm.22261	NM_019671	ENSMUSG00000021215	Net1	Net1a|mNET1	neuroepithelial cell transforming gene 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-118065466-1	chr5	118065366	118065566	+	544.0	f1_balb.idr	3' UTR (NM_172721, exon 11 of 11)	3' UTR (NM_172721, exon 11 of 11)	37723.0	NM_021344	57816.0	Mm.273285	NM_021344	ENSMUSG00000029359	Tesc	1010001A17Rik|2410011K10Rik|TE-1	tescalcin	protein-coding	-1.5061220274826	-1.47360709383584	-1.48343987814663	-1.49151681994238	-1.50383953926072	-1.47147628845725	-1.0170701920923	-1.49007105122263	2.15652851593596	0.535359572134045	1
Merged-chr4-151858919-2	chr4	151858819	151859019	+	897.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081557, intron 1 of 23)	intron (NM_001081557, intron 1 of 23)	2849.0	NM_001081557	100072.0	Mm.318846	NM_001081557	ENSMUSG00000014592	Camta1	1810059M14Rik|2310058O09Rik|AI316882|AW987475|mKIAA0833	calmodulin binding transcription activator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126377515-4	chr7	126377441	126377641	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045537, exon 1 of 13)	non-coding (NR_045537, exon 1 of 13)	393.0	NM_023712	73658.0	Mm.11112	NM_023712	ENSMUSG00000030741	Spns1	2210013K02Rik|Spin1|Spinl	spinster homolog 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-61583118-4	chr2	61582985	61583185	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011529, intron 1 of 7)	L1M4|LINE|L1	4499.0	NM_011529	21353.0	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-73150932-2	chr15	73150832	73151032	+	826.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153178, intron 1 of 18)	intron (NM_153178, intron 1 of 18)	34015.0	NM_153178	239528.0	Mm.23095	NM_153178	ENSMUSG00000036698	Ago2	1110029L17Rik|2310051F07Rik|AI225898|AL022874|AW546247|Eif2c2|Gerp95|Gm10365|mKIAA4215	argonaute RISC catalytic subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-96804520-4	chr5	96804434	96804634	+	879.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013470, intron 2 of 12)	MER21C|LTR|ERVL	11149.0	NM_013470	11745.0	Mm.7214	NM_013470	ENSMUSG00000029484	Anxa3	Anx3	annexin A3	protein-coding	-0.0230570783610909	-0.00537905037342973	-0.0111549429072232	0.422084991613107	0.372616253305458	-0.0040790407211812	-0.00987977840099893	0.810379219416261	1.68954769769536	0.451060118550173	1
Merged-chr2-168003613-2	chr2	168003513	168003713	+	671.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080708, intron 2 of 21)	intron (NM_001080708, intron 2 of 21)	6980.0	NM_001080708	69553.0	Mm.68454	NM_001080708	ENSMUSG00000074577	Ripor3	2310033K02Rik|Fam65c|Gm124	RIPOR family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-156921770-4	chr1	156921699	156921899	+	986.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357391, intron 1 of 19)	intron (NM_001357391, intron 1 of 19)	17588.0	NM_001159966	78255.0	Mm.28376	NM_023884	ENSMUSG00000026594	Ralgps2	1810020P17Rik|2210408F11Rik|4921528G01Rik|9130014M22Rik|AU043409|AW046161	Ral GEF with PH domain and SH3 binding motif 2	protein-coding	2.97495191203323	3.05598878575599	3.69455902431095	2.20653046118569	3.14671804006257	2.9671099678618	1.58197595577611	3.37284048973763	-0.274707475205571	0.720454953158157	0.998431161219273
Merged-chr18-36230824-4	chr18	36230726	36230926	+	997.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33666.0	NM_001167891	100042150.0	Mm.380390	NM_001167891	ENSMUSG00000060275	Nrg2	Don1|NTAK	neuregulin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-96296138-3	chr7	96296021	96296221	+	751.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310760, intron 1 of 32)	MIR|SINE|MIR	-9546.0	NR_105818	102465210.0		NR_105818	ENSMUSG00000099030	Mir6394	Gm27929|mmu-mir-6394	microRNA 6394	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-79634705-3	chr2	79634591	79634791	+	983.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080558)	promoter-TSS (NM_080558)	-734.0	NM_080558	70599.0	Mm.272881	NM_080558	ENSMUSG00000027007	Ssfa2	5730488C15Rik|CS-1|CS1|KRAP|SPAG13|mKIAA1927	sperm specific antigen 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-146113272-1	chr6	146113172	146113372	+	757.0	f0_balb.idr	intron (NM_019923, intron 55 of 56)	intron (NM_019923, intron 55 of 56)	179150.0	NM_010656	16651.0	Mm.49689	NM_010656	ENSMUSG00000030255	Sspn	Krag	sarcospan	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-150097906-3	chr5	150097812	150098012	+	910.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	79237.0	NM_001289566	140498.0	Mm.444643	NM_080468	ENSMUSG00000053368	Rxfp2	Gpr106|Great|Lgr8	relaxin/insulin-like family peptide receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-51721935-1	chr18	51721835	51722035	+	821.0	f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	401611.0	NR_029788	723830.0		NR_029788	ENSMUSG00000065494	Mir28a	Mir28|Mirn28|mmu-mir-28|mmu-mir-28a	microRNA 28a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-105518075-2	chr5	105517975	105518175	+	913.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1396.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-30633267-4	chr13	30633164	30633364	+	915.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18221.0	NR_045975	75090.0	Mm.292232	NR_045975	ENSMUSG00000086263	4930519D14Rik	-	RIKEN cDNA 4930519D14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-101828196-2	chr5	101828096	101828296	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	63066.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-34451982-2	chr4	34451882	34452082	+	576.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-98633.0	NM_001007589	433693.0	Mm.389532	NM_026019	ENSMUSG00000028291	Akirin2	2700059D21Rik|AA114675|AA522011|AU019887|Akirin-2	akirin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-110691884-1	chr12	110691784	110691984	+	551.0	f1_balb.idr	intron (NM_010480, intron 10 of 10)	intron (NM_010480, intron 10 of 10)	4511.0	NM_010480	15519.0	Mm.1843	NM_010480	ENSMUSG00000021270	Hsp90aa1	86kDa|89kDa|AL024080|AL024147|Hsp86-1|Hsp89|Hsp90|Hspca|hsp4	heat shock protein 90, alpha (cytosolic), class A member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-117358954-2	chr5	117358837	117359037	+	820.599976	f1_balb.idr|f1_c57bl6.idr	intron (NM_021539, intron 1 of 8)	B3|SINE|B2	1632.0	NM_021539	59043.0	Mm.28489	NM_021539	ENSMUSG00000029364	Wsb2	AA673511|Swip2|WSB-2	WD repeat and SOCS box-containing 2	protein-coding	-1.56355737717652	-1.81244775989375	-1.82128546162293	-1.82854501295842	-1.83962066705452	-1.81053259306168	-1.81928479966835	-1.82724555674025	-1.28500227969968	0.715751224811686	1
Merged-chr5-124480353-4	chr5	124480244	124480444	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2109.0	NM_030259	80291.0	Mm.425280	NM_030259	ENSMUSG00000029401	Rilpl2	-	Rab interacting lysosomal protein-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167635752-2	chr2	167635652	167635852	+	871.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	-3747.0	NM_023230	66589.0	Mm.278783	NM_023230	ENSMUSG00000078923	Ube2v1	0610011J09Rik|AI256840|CROC-1|CROC1|D7Bwg1382e|UEV-1	ubiquitin-conjugating enzyme E2 variant 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-40196175-4	chr9	40196073	40196273	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153114, intron 1 of 6)	intron (NR_153114, intron 1 of 6)	3857.0	NM_030713	80902.0	Mm.132196	NM_030713	ENSMUSG00000025602	Zfp202	C130037E22Rik|Znf202	zinc finger protein 202	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-31040514-2	chr7	31040414	31040614	+	788.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_106017)	promoter-TSS (NR_106017)	-197.0	NR_106017	102465635.0		NR_106017	ENSMUSG00000098783	Mir7050	Gm27578|mmu-mir-7050	microRNA 7050	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-46921770-2	chr18	46921676	46921876	+	704.666626	f0_balb.idr|f1_balb.idr	promoter-TSS (NM_001033446)	promoter-TSS (NM_001033446)	-39.0	NM_001033446	381142.0	Mm.329423	NM_001033446	ENSMUSG00000073568	Arl14epl	Gm949	ADP-ribosylation factor-like 14 effector protein-like	protein-coding	0.619670059462389	0.678241553977362	0.659750574986316	0.645040277465426	1.69707088218772	0.951120749095761	1.78821966765737	2.11218030384262	5.22211019849833	0.000630946370068115	0.013541992751423
Merged-chr11-49249404-2	chr11	49249304	49249504	+	645.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110149, intron 1 of 1)	intron (NM_001110149, intron 1 of 1)	-1148.0	NM_001110150	17308.0	Mm.196933	NM_010794	ENSMUSG00000020346	Mgat1	Mgat-1	mannoside acetylglucosaminyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-85844785-3	chr11	85844690	85844890	+	912.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12175.0	NM_009324	21385.0	Mm.287052	NM_009324	ENSMUSG00000000093	Tbx2	-	T-box 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-69352948-4	chr10	69352846	69353046	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007659)	promoter-TSS (NM_007659)	-34.0	NM_007659	12534.0	Mm.281367	NM_007659	ENSMUSG00000019942	Cdk1	Cdc2|Cdc2a|p34<CDC2>	cyclin-dependent kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-97761052-2	chr7	97760952	97761152	+	890.8333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1A|DNA|hAT-Charlie	-22805.0	NM_175105	66333.0	Mm.29756	NM_175105	ENSMUSG00000042797	Aqp11	1700015P13Rik|AI648923|sjds	aquaporin 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-78452409-2	chr17	78452309	78452509	+	617.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx10|LINE|L1	-34257.0	NM_001285940	225020.0	Mm.236835	NM_199448	ENSMUSG00000056121	Fez2	9030616F16|D17Ertd315e	fasciculation and elongation protein zeta 2 (zygin II)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28298868-3	chr7	28298695	28298895	+	773.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007866, intron 4 of 8)	intron (NM_007866, intron 4 of 8)	2990.0	NM_007866	13389.0	Mm.12896	NM_007866	ENSMUSG00000003436	Dll3	pu|pudgy	delta like canonical Notch ligand 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-30761429-4	chr14	30761332	30761532	+	987.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166531, intron 2 of 21)	L2a|LINE|L2	45817.0	NM_001166532	54650.0	Mm.294662	NM_019460	ENSMUSG00000006527	Sfmbt1	4930442N21Rik|9330180L21Rik|AA536974|Sfmbt|Smr	Scm-like with four mbt domains 1	protein-coding	3.29018369891562	2.49250541018052	2.73285956687202	2.49184660662087	4.44141399806036	3.13762721017485	4.45407340033034	3.3284532610031	1.80837342001701	0.00349806014543379	0.0506880744262254
Merged-chr19-8801351-2	chr19	8801251	8801451	+	893.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1145.0	NM_133759	75291.0	Mm.23423	NM_133759	ENSMUSG00000071661	Zbtb3	4930563M09Rik	zinc finger and BTB domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-55874318-4	chr1	55874205	55874405	+	712.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56936.0	NR_045837	329159.0	Mm.98697	NR_045837	ENSMUSG00000099950	9130227L01Rik	-	RIKEN cDNA 9130227L01 gene	ncRNA	1.9312287886974	2.03905819280937	2.41062229872212	1.42211823918437	2.46166606312474	1.2467623949022	2.43022339303621	1.61963764723346	0.140165487813895	0.892091394826	0.998431161219273
Merged-chr5-23121459-3	chr5	23121368	23121568	+	869.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029990, intron 2 of 2)	Charlie5|DNA|hAT-Charlie	312885.0	NR_040469	269630.0	Mm.425231	NR_040469	ENSMUSG00000073147	5031425E22Rik	-	RIKEN cDNA 5031425E22 gene	ncRNA	3.84815644603991	3.5280842437965	3.29660706721825	3.86625198722639	4.13024563490198	5.08484142769276	4.00565757324928	3.31995513071574	0.856228502348462	0.0985413154950876	0.488292384839112
Merged-chr9-37544590-4	chr9	37544468	37544668	+	862.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_020518)	TTS (NM_020518)	5313.0	NM_020518	57276.0	Mm.27478	NM_020518	ENSMUSG00000001943	Vsig2	1190004B15Rik|2210413P10Rik|AU040484|CTX|Ctm	V-set and immunoglobulin domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21505447-1	chr9	21505347	21505547	+	545.0	f1_c57bl6.idr	intron (NM_001357721, intron 18 of 19)	intron (NM_001357721, intron 18 of 19)	4447.0	NM_001324510	17083.0	Mm.196618	NM_010744	ENSMUSG00000032180	Tmed1	Il1rl1l|Ly84l|St2l	transmembrane p24 trafficking protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-43578582-2	chr10	43578482	43578682	+	631.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009846)	promoter-TSS (NM_009846)	-587.0	NM_009846	12484.0	Mm.29742	NM_009846	ENSMUSG00000047139	Cd24a	Cd24|HSA|Ly-52|nectadrin	CD24a antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-158794735-4	chr2	158794633	158794833	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291144)	promoter-TSS (NM_001291144)	-74.0	NM_145742	71715.0	Mm.315652	NM_145742	ENSMUSG00000027655	Dhx35	1200009D07Rik|Ddx35	DEAH (Asp-Glu-Ala-His) box polypeptide 35	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-24112255-3	chr7	24112176	24112376	+	877.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021307)	promoter-TSS (NM_021307)	-44.0	NM_021307	57745.0	Mm.82678	NM_021307	ENSMUSG00000052675	Zfp112	Znf112|Znf228	zinc finger protein 112	protein-coding	-0.026899569888667	-0.332003665687276	-0.334895773387525	0.0204513737000794	-0.340182523911952	-0.33134667325738	-0.33426105325808	0.0253353542379099	-0.850075642308784	0.739019584735082	1
Merged-chr7-45563832-3	chr7	45563712	45563912	+	741.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025330, intron 6 of 8)	(TG)n|Simple_repeat|Simple_repeat	-6341.0	NM_009737	12036.0	Mm.24210	NM_009737	ENSMUSG00000030826	Bcat2	Bcat(m)|Bcat-2|Eca40	branched chain aminotransferase 2, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129314107-4	chr2	129314007	129314207	+	984.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-4135.0	NM_010554	16175.0	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	3.81521717514074	3.54179698715091	2.78515532362043	3.41060078689736	2.92280974171283	3.47879197141623	3.60841330932422	3.26358489096914	-0.173303691588765	0.762760958782737	0.998431161219273
Merged-chr2-36218260-2	chr2	36218160	36218360	+	801.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12166.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-129718785-1	chr6	129718685	129718885	+	575.0	f1_balb.idr	Intergenic	Lx4B|LINE|L1	-1653.0	NM_001012520	503550.0	Mm.376476	NM_001012520	ENSMUSG00000067610	Klri1	-	killer cell lectin-like receptor family I member 1	protein-coding	-1.84303373260285	-1.81303463126392	-1.82210660711932	-1.82955859819738	-1.84092785115721	-1.81106869625141	-1.8200529106377	-1.54273750312762	1.50114612804783	0.670102668014672	1
Merged-chr12-3813948-2	chr12	3813848	3814048	+	906.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271753, intron 1 of 22)	intron (NM_001271753, intron 1 of 22)	6788.0	NM_001271753	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-98662729-8	chr15	98662626	98662826	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080981, intron 1 of 16)	CpG	163.0	NM_001080981	74351.0	Mm.45725	NM_001080981	ENSMUSG00000003360	Ddx23	3110082M05Rik|4921506D17Rik	DEAD (Asp-Glu-Ala-Asp) box polypeptide 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-52895117-4	chr2	52895020	52895220	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	37252.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-12949307-4	chr18	12949202	12949402	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7461.0	NM_207530	64291.0	Mm.259470	NM_020573	ENSMUSG00000044252	Osbpl1a	G430090F17Rik|Gm753|ORP-1|Osbpl1b	oxysterol binding protein-like 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-170901052-2	chr1	170900952	170901152	+	685.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	11889.0	NM_001029984	435653.0	Mm.337931	NM_001029984	ENSMUSG00000070524	Fcrlb	FREB-2|FREB2|FcRL2|Fcrlm2|Fcry|mFCRL2	Fc receptor-like B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-78490652-2	chr9	78490552	78490752	+	596.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur2|SINE|Alu	-8928.0	NM_010106	13627.0	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120097085-2	chr11	120096985	120097185	+	564.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_183137, intron 2 of 12)	intron (NM_183137, intron 2 of 12)	1646.0	NM_183137	78777.0	Mm.23672	NM_183137	ENSMUSG00000025377	Tepsin	2410002I01Rik|Enthd2	TEPSIN, adaptor related protein complex 4 accessory protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-100110175-4	chr6	100110055	100110255	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	177203.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3806465-4	chr12	3806379	3806579	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271753)	promoter-TSS (NM_001271753)	-501.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5569786-4	chr17	5569706	5569906	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	77206.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-81105983-1	chr13	81105883	81106083	+	541.0	f1_balb.idr	intron (NM_054053, intron 88 of 89)	L1_Mur2|LINE|L1	141909.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-144700151-4	chr3	144700052	144700252	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001282037, intron 6 of 10)	intron (NM_001282037, intron 6 of 10)	20183.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-164911622-8	chr2	164911510	164911710	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_199027, exon 1 of 28)	5' UTR (NM_199027, exon 1 of 28)	140.0	NM_199027	329559.0	Mm.330776	NM_199027	ENSMUSG00000039834	Zfp335	1810045J01Rik|NIF-1|Nif1|Znf335	zinc finger protein 335	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-47001529-2	chr14	47001429	47001629	+	974.666626	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001163433, exon 1 of 12)	5' UTR (NM_001163433, exon 1 of 12)	189.0	NM_001163433	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-143984088-2	chr1	143983988	143984188	+	981.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR18B_MM|LTR|ERVK	20061.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-101917817-2	chr5	101917717	101917917	+	626.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 22 of 66)	intron (NM_172882, intron 22 of 66)	152104.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-106546237-4	chr3	106546145	106546345	+	753.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293694, intron 1 of 8)	intron (NM_001293694, intron 1 of 8)	1380.0	NM_001357818	99712.0	Mm.429443	NM_133869	ENSMUSG00000040774	Cept1	9930118K05Rik|mCEPT1	choline/ethanolaminephosphotransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100979328-3	chr7	100979217	100979417	+	641.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14951.0	NM_183168	233571.0	Mm.235193	NM_183168	ENSMUSG00000048779	P2ry6	2010204J23Rik|P2Y6	pyrimidinergic receptor P2Y, G-protein coupled, 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129570395-4	chr2	129570311	129570511	+	959.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-22428.0	NM_001291020	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	3.95822001717814	3.91629216296324	4.38723119654075	3.31887947599229	2.6606991663875	3.1472274635526	3.25681841619748	1.91067727952038	-1.73079633781912	0.00434479298433418	0.0599181910644154
Merged-chr4-62643347-2	chr4	62643247	62643447	+	557.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019492, intron 17 of 19)	intron (NM_019492, intron 17 of 19)	23675.0	NM_134257	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-86920807-4	chr10	86920705	86920905	+	998.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138673, intron 30 of 68)	intron (NM_138673, intron 30 of 68)	87137.0	NM_138673	192188.0	Mm.279611	NM_138673	ENSMUSG00000035459	Stab2	FEEL-2|FELL|MFEEL-2|STAB-2	stabilin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-137758312-2	chr5	137758212	137758412	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023910, intron 3 of 4)	intron (NM_023910, intron 3 of 4)	12343.0	NM_029805	78829.0	Mm.286399	NM_023910	ENSMUSG00000029723	Tsc22d4	0610009M14Rik|1700023B23Rik|AI415410|Thg-1pit|Tilz2	TSC22 domain family, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-64888394-2	chr18	64888289	64888489	+	819.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114386, intron 1 of 30)	CpG	633.0	NM_001114386	83814.0	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	1.41639735977793	3.05369048187497	1.05755260025157	1.82762729588139	1.73881367977269	1.38392615422336	2.47408621145976	1.50714127537945	-0.57358358323649	0.602347539919396	0.973565005745828
Merged-chr6-27207009-1	chr6	27206909	27207109	+	575.0	f1_balb.idr	Intergenic	(TTTG)n|Simple_repeat|Simple_repeat	729741.0	NR_030420	735266.0		NR_030420	ENSMUSG00000076067	Mir592	Mirn592|mir-592|mmu-mir-592	microRNA 592	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133816383-3	chr4	133816314	133816514	+	872.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58317.0	NM_001285506	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	0.505442585025881	0.53520787457797	1.34765309008941	0.518028927273198	1.22021232416792	0.537375734953297	1.03223610499052	1.1077592276602	0.956206340771694	0.579397686694503	0.965985075107763
Merged-chr17-55946540-2	chr17	55946440	55946640	+	801.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310337, intron 1 of 3)	intron (NM_001310337, intron 1 of 3)	-1281.0	NM_146249	240120.0	Mm.441018	NM_146249	ENSMUSG00000062101	Zfp119b	-	zinc finger protein 119b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-130228479-3	chr10	130228379	130228579	+	958.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17351.0	NM_146300	258297.0	Mm.377419	NM_146300	ENSMUSG00000045559	Olfr827	MOR210-5	olfactory receptor 827	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-103715189-4	chr5	103715110	103715310	+	860.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-38952.0	NM_133919	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-86911363-2	chr8	86911263	86911463	+	892.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19C|LTR|ERVK	-26105.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-18877873-6	chr16	18877759	18877959	+	925.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010435, intron 1 of 24)	intron (NM_010435, intron 1 of 24)	1109.0	NM_010435	15260.0	Mm.15694	NM_010435	ENSMUSG00000022702	Hira	AA138857|D16Ertd95e|Gm15797|N28177|Tuple1	histone cell cycle regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-90412760-2	chr3	90412660	90412860	+	766.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_178876, intron 6 of 30)	intron (NM_178876, intron 6 of 30)	20876.0	NM_145540	229543.0	Mm.268564	NM_145540	ENSMUSG00000027933	Ints3	C77668	integrator complex subunit 3	protein-coding	1.06204861063644	0.571006422693742	1.18040684397269	1.498574338748	0.966052213461254	0.573264533468143	0.762220444526361	0.554447607318074	-2.02971647622802	0.207119578362061	0.695175503875795
Merged-chr13-60673871-2	chr13	60673824	60674024	+	985.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	B2_Mm2|SINE|B2	71713.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-106972036-4	chr8	106971929	106972129	+	987.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009229, intron 1 of 6)	intron (NM_009229, intron 1 of 6)	36279.0	NM_009229	20650.0	Mm.30228	NM_009229	ENSMUSG00000041308	Sntb2	Snt2	syntrophin, basic 2	protein-coding	2.13555223234084	2.98614712122426	3.8322588521205	2.68750209687363	2.95843139299597	3.21980046136241	2.90757384624114	3.0184613700973	-0.0659445334368175	0.923902591259786	0.998431161219273
Merged-chr5-143113063-4	chr5	143112935	143113135	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207110)	promoter-TSS (NM_207110)	-15.0	NM_001359851	108086.0	Mm.381440	NM_080561	ENSMUSG00000045078	Rnf216	2810055G22Rik|AI647468|AU019462|C86502|F830018F18Rik|TRIAD3|UIP83|Ubce7ip1	ring finger protein 216	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30309476-3	chr7	30309373	30309573	+	727.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198027, intron 1 of 6)	intron (NM_198027, intron 1 of 6)	720.0	NM_198027	233065.0	Mm.276277	NM_198027	ENSMUSG00000042831	Alkbh6	AI839550|Abh6|C130099A02	alkB homolog 6	protein-coding	2.50492559747707	1.26806005293796	2.27066924222212	1.45287327125942	2.6571736395937	2.10865643664222	2.49452580745184	1.45937778206624	0.631774247851985	0.537666017421511	0.953963493057627
Merged-chr3-108441837-2	chr3	108441737	108441937	+	934.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011319, intron 1 of 11)	intron (NM_011319, intron 1 of 11)	3422.0	NM_011319	20226.0	Mm.28688	NM_011319	ENSMUSG00000068739	Sars	Sars1|Strs|serRS	seryl-aminoacyl-tRNA synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-122988511-3	chr10	122988389	122988589	+	930.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	-2765.0	NR_029527	387251.0		NR_029527	ENSMUSG00000065406	Mirlet7i	Mirnlet7i|let-7i|mmu-let-7i	microRNA let7i	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-128622900-2	chr4	128622800	128623000	+	718.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A1|LTR|ERVL-MaLR	-4281.0	NM_205823	384059.0	Mm.331901	NM_205823	ENSMUSG00000062545	Tlr12	Gm1365|Tlr11	toll-like receptor 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-54614402-3	chr9	54614298	54614498	+	810.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053178, intron 11 of 13)	intron (NM_053178, intron 11 of 13)	27887.0	NM_029573	67834.0	Mm.279195	NM_029573	ENSMUSG00000032279	Idh3a	1110003P10Rik|1500012E04Rik|AA407078|AI316514	isocitrate dehydrogenase 3 (NAD+) alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4153140-2	chr19	4153040	4153240	+	577.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011778, intron 9 of 10)	intron (NM_011778, intron 9 of 10)	-1506.0	NM_016933	19265.0	Mm.271937	NM_016933	ENSMUSG00000045826	Ptprcap	AI605264|CD-45-AP|LPAP|LSM-1	protein tyrosine phosphatase, receptor type, C polypeptide-associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-78678080-1	chr14	78677980	78678180	+	711.0	f0_balb.idr	intron (NM_001081336, intron 2 of 29)	HAL1|LINE|L1	-33629.0	NR_104044	380921.0	Mm.89591	NM_001081336	ENSMUSG00000034731	Dgkh	5930402B05Rik|D130015C16|DGK	diacylglycerol kinase, eta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-91517161-4	chr13	91517077	91517277	+	932.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360776, intron 1 of 15)	ORR1D2|LTR|ERVL-MaLR	56080.0	NM_024186	66970.0	Mm.343095	NM_024186	ENSMUSG00000003992	Ssbp2	1500004K09Rik|2310079I02Rik|9330163K02Rik|A830008M03Rik|AU067692|AW558684|Hspc116|SSDP2	single-stranded DNA binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-91728076-4	chr13	91727978	91728178	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028314, intron 1 of 1)	L1MC4a|LINE|L1	-13443.0	NM_028790	74156.0	Mm.275963	NM_028790	ENSMUSG00000021620	Acot12	1300004O04Rik|4930449F15Rik|AV027244|Cach|mCACH-1	acyl-CoA thioesterase 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-25259052-2	chr2	25258952	25259152	+	694.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-3546.0	NM_175286	97031.0	Mm.308539	NM_175286	ENSMUSG00000048707	Tprn	C430004E15Rik|C87750	taperin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-120866899-1	chr9	120866799	120866999	+	1000.0	f0_balb.idr	Intergenic	Intergenic	48351.0	NR_040742	76402.0	Mm.436588	NR_040742	ENSMUSG00000100146	1700020M21Rik	-	RIKEN cDNA 1700020M21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139027155-2	chr5	139027055	139027255	+	620.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359099, intron 9 of 10)	PB1D10|SINE|Alu	-32202.0	NM_008808	18590.0	Mm.2675	NM_008808	ENSMUSG00000025856	Pdgfa	-	platelet derived growth factor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-21938747-2	chr3	21938647	21938847	+	862.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-137905.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-107923888-3	chr13	107923784	107923984	+	772.977783	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33820.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	1.7434726572317	1.98597249487397	0.942873526107868	0.926759379128297	1.54582422260937	2.20408389871684	0.947407229537989	1.75227195419803	0.588269201095581	0.652314119647934	0.986434615290108
Merged-chr19-47227813-2	chr19	47227713	47227913	+	965.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021360, intron 1 of 5)	intron (NM_021360, intron 1 of 5)	-1030.0	NM_001163480	18011.0	Mm.313651	NM_021360	ENSMUSG00000006435	Neurl1a	2410129E16Rik|AI450910|AI481072|Neu1|Neur1|Neurl|Neurl1|Nlz|Rnf67	neuralized E3 ubiquitin protein ligase 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-33131916-4	chr2	33131857	33132057	+	921.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355201)	promoter-TSS (NM_001355201)	-521.0	NM_001355201	99326.0	Mm.41290	NM_178888	ENSMUSG00000038860	Garnl3	AW120551	GTPase activating RANGAP domain-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-73028322-1	chr17	73028222	73028422	+	610.0	f1_balb.idr	Intergenic	MTC|LTR|ERVL-MaLR	-79663.0	NM_001177968	225010.0	Mm.329194	NM_001081071	ENSMUSG00000054469	Lclat1	AI181996|Agpat8|Alcat1|Gm91|Lycat	lysocardiolipin acyltransferase 1	protein-coding	0.138040783936742	0.767029339155681	0.150400727935938	0.677108929929878	0.619710293267163	0.157770639011339	0.151727673554957	0.312857753334113	-0.956671443943199	0.63601852779113	1
Merged-chr12-71886007-2	chr12	71885907	71886107	+	940.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_026102, intron 1 of 25)	intron (NM_026102, intron 1 of 25)	-3536.0	NM_001286452	208846.0	Mm.87417	NM_026102	ENSMUSG00000034574	Daam1	-	dishevelled associated activator of morphogenesis 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-31008363-4	chr7	31008264	31008464	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26443.0	NM_001242647	76415.0	Mm.259739	NM_175240	ENSMUSG00000046826	Fam187b	1700020B09Rik|Tmem162	family with sequence similarity 187, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-23975296-4	chr1	23975207	23975407	+	854.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6B|LTR|ERVK	30333.0	NM_026503	68002.0	Mm.250424	NM_026503	ENSMUSG00000026154	Sdhaf4	1110058L19Rik|1700001E18Rik|C6orf57	succinate dehydrogenase complex assembly factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-83035044-2	chr15	83034944	83035144	+	915.7999880000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1647.0	NM_001271411	74039.0	Mm.32584	NM_028728	ENSMUSG00000058099	Nfam1	4921501M20Rik|Cnaip	Nfat activating molecule with ITAM motif 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-118370646-4	chr10	118370543	118370743	+	970.116699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70403.0	NM_008337	15978.0	Mm.240327	NM_008337	ENSMUSG00000055170	Ifng	IFN-g|Ifg	interferon gamma	protein-coding	5.06328918341941	5.15846465871693	5.18148824368921	4.67545425365061	4.86060695124032	5.64112745372319	4.16244200703863	5.07705617503778	-0.00399356437726912	0.991187345629909	0.998431161219273
Merged-chr14-103713069-2	chr14	103712969	103713169	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13637.0	NR_045148	70898.0	Mm.27548	NR_045148	ENSMUSG00000089707	Slain1os	4921525B02Rik	SLAIN motif family, member 1, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-77270318-2	chr10	77270218	77270418	+	916.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_030262)	TTS (NM_030262)	11018.0	NM_030262	80294.0	Mm.203556	NM_030262	ENSMUSG00000020260	Pofut2	2310011G23Rik|AI256847|BC003494|C21orf80|FUT13	protein O-fucosyltransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-88805974-3	chr4	88805884	88806084	+	735.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001243155).3	promoter-TSS (NM_001243155).3	-42.0	NM_001243165	545647.0	Mm.380019	NM_001243165	ENSMUSG00000096582	Gm13289	-	predicted gene 13289	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-16658709-3	chr10	16658613	16658813	+	857.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	437069.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-31567140-2	chr17	31567040	31567240	+	798.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016670, intron 1 of 10)	intron (NM_016670, intron 1 of 10)	2367.0	NM_016670	18771.0	Mm.259295	NM_016670	ENSMUSG00000006705	Pknox1	D17Wsu76e|PREP1	Pbx/knotted 1 homeobox	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52575690-4	chr13	52575604	52575804	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2479.0	NR_046069	100040572.0	Mm.278873	NR_046069		Gm2848	-	predicted gene 2848	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129739002-2	chr4	129738902	129739102	+	612.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011317, intron 1 of 8)	intron (NM_011317, intron 1 of 8)	3301.0	NM_011317	20218.0	Mm.8256	NM_011317	ENSMUSG00000028790	Khdrbs1	Sam68|p62|p68	KH domain containing, RNA binding, signal transduction associated 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-70011933-2	chr9	70011833	70012033	+	556.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039519)	promoter-TSS (NM_001039519)	-615.0	NM_001282084	235459.0	Mm.293117	NM_199151	ENSMUSG00000033543	Gtf2a2	TFIIA-gamma|TfIIg|Tfiia2	general transcription factor II A, 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-82046412-2	chr15	82046312	82046512	+	813.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_011482, intron 1 of 2)	ID_B1|SINE|B4	1186.0	NM_011482	20826.0	Mm.299312	NM_011482	ENSMUSG00000063480	Snu13	FA-1|Fta1|Nhp2l1|Ssfa1	SNU13 homolog, small nuclear ribonucleoprotein (U4/U6.U5)	protein-coding	0.891442533723909	0.37185757959485	0.164252597526672	0.159080224448318	0.905480085370207	0.377033128492276	0.165728228276954	0.159985026003691	0.0414658531028454	0.983498900015971	1
Merged-chr6-113700923-2	chr6	113700823	113701023	+	979.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347356, intron 2 of 7)	intron (NM_001347356, intron 2 of 7)	3873.0	NM_001033463	381801.0	Mm.333322	NM_001033463	ENSMUSG00000056952	Tatdn2	AI646012|mKIAA0218	TatD DNase domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-54397136-2	chr12	54397036	54397236	+	644.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER20B|LTR|ERVK	-5818.0	NR_033689	665239.0	Mm.26856	NR_033689		Gm7550	EG665239|Gm666	predicted gene 7550	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5510639-4	chr19	5510548	5510748	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024560)	promoter-TSS (NM_001024560)	-131.0	NM_001024560	225861.0	Mm.20071	NM_001024560	ENSMUSG00000056185	Snx32	B930037P14Rik|Snx6b	sorting nexin 32	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-51377427-4	chr12	51377327	51377527	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029825)	promoter-TSS (NM_029825)	-86.0	NM_001306178	76983.0	Mm.216511	NM_029825	ENSMUSG00000020952	Scfd1	3110021P21Rik|RA410|STXBP1L2	Sec1 family domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44567827-4	chr9	44567710	44567910	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37082.0	NM_001110826	13209.0	Mm.267061	NM_007841	ENSMUSG00000032097	Ddx6	1110001P04Rik|C430015D01Rik|E230023J21Rik|HLR2|mRCK/P54|p54|rck	DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	protein-coding	5.26092440468852	4.90212684725657	5.03672124900781	5.86318720563806	5.09470550316731	4.56613104670457	3.82778551964902	5.00422376301393	-0.719063243381116	0.0551492416120662	0.345104624927801
Merged-chr5-92437323-2	chr5	92437223	92437423	+	776.916687	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-2124.0	NM_183392	269113.0	Mm.275289	NM_183392	ENSMUSG00000034826	Nup54	3110079L04Rik|54kDa	nucleoporin 54	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-43383182-4	chr11	43383050	43383250	+	786.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	-8689.0	NR_029558	387164.0		NR_029558	ENSMUSG00000065601	Mir146	Mirn146|miR-146a|mmu-mir-146	microRNA 146	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-54987062-2	chr11	54986962	54987162	+	581.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_013472, exon 21 of 26)	exon (NM_013472, exon 21 of 26)	-24122.0	NM_001271455	57783.0	Mm.259671	NM_021327	ENSMUSG00000020400	Tnip1	ABIN|ABIN-1|ABIN1|AU018810|Naf1|Nef|VAN	TNFAIP3 interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-105895435-4	chr3	105895341	105895541	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027025, intron 1 of 6)	intron (NM_027025, intron 1 of 6)	-8980.0	NM_009631	11542.0	Mm.235024	NM_009631	ENSMUSG00000000562	Adora3	A3AR|A3R|AA3R|ARA3|Gpcr2	adenosine A3 receptor	protein-coding	-1.33793447301127	-1.30826030895896	-1.31828845321677	-1.32652586948969	-0.950077789383471	-1.30608716826488	-1.15822981092724	-1.32505137591525	2.29714043412452	0.496446034091415	1
Merged-chr11-100408263-3	chr11	100408145	100408345	+	720.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_176830)	TTS (NM_176830)	6574.0	NM_176830	66180.0	Mm.4940	NM_176830	ENSMUSG00000006931	P3h4	1110036O03Rik|AI413214|Leprel4|Sc65	prolyl 3-hydroxylase family member 4 (non-enzymatic)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-41774200-2	chr4	41774088	41774288	+	1000.0	f0_c57.idr|f1_c57bl6.idr	promoter-TSS (NM_001347065)	promoter-TSS (NM_001347065)	-12.0	NM_001048179	20301.0	Mm.335946	NM_011336	ENSMUSG00000073888	Ccl27a	ALP|AW558992|CTACK|CTAK|Ccl27|ESkine|ILC|PESKY|Scya27|Scya27a	chemokine (C-C motif) ligand 27A	protein-coding	5.31540851274714	5.60326876510286	5.66135207246774	5.47007862385236	1.27101568656733	1.58568465883486	1.49273114907933	1.40685768658227	-8.36048262921759	4.21599684223559e-15	2.52917650565713e-12
Merged-chr7-44553962-4	chr7	44553858	44554058	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285519)	promoter-TSS (NM_001285519)	7.0	NM_009473	22260.0	Mm.968	NM_009473	ENSMUSG00000060601	Nr1h2	AI194859|LXR|LXRB|LXRBSV|LXRbeta|NER1|OR-1|RIP15|UR|Unr|Unr2	nuclear receptor subfamily 1, group H, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-56401384-2	chr10	56401284	56401484	+	756.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A2|LTR|ERVL-MaLR	24084.0	NM_010288	14609.0	Mm.378921	NM_010288	ENSMUSG00000050953	Gja1	AU042049|AW546267|Cnx43|Cx43|Cx43alpha1|Gja-1|Npm1|connexin43	gap junction protein, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-83274926-2	chr4	83274826	83275026	+	691.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027238, intron 2 of 19)	intron (NM_027238, intron 2 of 19)	49263.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133822568-2	chr4	133822462	133822662	+	828.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	52169.0	NM_001285506	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	-0.643947544515173	-0.633099188729109	-0.0641239051495042	-0.639399037742312	-0.643271268608958	-0.632296893744128	-0.168615286170003	-0.638920067900268	-0.377261004685945	0.896083238598253	1
Merged-chr10-81641079-2	chr10	81640979	81641179	+	547.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027480, intron 14 of 19)	intron (NM_027480, intron 14 of 19)	-7990.0	NM_001142963	100233208.0	Mm.327168	NM_001142963	ENSMUSG00000096856	Gm10778	-	predicted gene 10778	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-76152695-4	chr14	76152591	76152791	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41800.0	NM_013745	27275.0	Mm.21138	NM_013745	ENSMUSG00000022009	Nufip1	Nufip	nuclear fragile X mental retardation protein interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-84854566-2	chr15	84854466	84854666	+	684.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356573, intron 2 of 12)	CpG	533.0	NM_001356573	271305.0	Mm.101022	NM_001081166	ENSMUSG00000016624	Phf21b	A730032D07Rik	PHD finger protein 21B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-97342878-1	chr7	97342778	97342978	+	1000.0	f1_balb.idr	intron (NM_001039039, intron 1 of 1)	intron (NM_001039039, intron 1 of 1)	10555.0	NM_001039039	622320.0	Mm.334029	NM_001039039	ENSMUSG00000044952	Kctd21	EG622320	potassium channel tetramerisation domain containing 21	protein-coding	0.264170337200727	0.28607699715593	0.967579435120079	0.588063759307287	0.938604952206365	0.658980292138437	0.280509185469637	0.274365148807383	0.0538594892241187	0.977573673405926	1
Merged-chr11-3288687-3	chr11	3288620	3288820	+	694.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045109)	promoter-TSS (NR_045109)	-411.0	NR_045108	56218.0	Mm.275563	NM_019574	ENSMUSG00000020453	Patz1	8430401L15Rik|AI447519|Mazr|Patz|Zfp278	POZ (BTB) and AT hook containing zinc finger 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-121343325-4	chr6	121343300	121343500	+	883.337524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347433, intron 1 of 14)	intron (NM_001347433, intron 1 of 14)	324.0	NM_001347433	14411.0	Mm.274506	NM_133661	ENSMUSG00000030109	Slc6a12	BGT1|GAT-2|GAT2|Gabt2	solute carrier family 6 (neurotransmitter transporter, betaine/GABA), member 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46487678-2	chr19	46487578	46487778	+	962.833374	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_015752, exon 12 of 12)	3' UTR (NM_015752, exon 12 of 12)	-13970.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123032605-2	chr5	123032505	123032705	+	668.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	14411.0	NM_029112	74890.0	Mm.141383	NM_029112	ENSMUSG00000029477	Morn3	4930438O03Rik	MORN repeat containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131043025-1	chr1	131042925	131043125	+	599.333313	f0_c57.idr	Intergenic	Intergenic	23180.0	NM_010548	16153.0	Mm.874	NM_010548	ENSMUSG00000016529	Il10	CSIF|Il-10	interleukin 10	protein-coding	1.41947006626456	1.93512591484323	2.70316707661356	1.05777269234567	1.72373599895057	1.95065147347307	1.08559316380538	2.34586733383959	-0.231135830619792	0.840680848161199	0.998431161219273
Merged-chr10-68268857-3	chr10	68268775	68268975	+	813.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023598, intron 2 of 9)	intron (NM_023598, intron 2 of 9)	9851.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	2.68527655285311	1.60137872673955	1.75833532085371	2.69490499974072	2.50647506076266	2.00976123044156	1.56579607531332	2.15750481169165	-0.439517393739224	0.641563623591801	0.982599433509505
Merged-chr2-52424407-4	chr2	52424287	52424487	+	955.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_182994, intron 1 of 5)	CpG	487.0	NM_182994	75423.0	Mm.314378	NM_182994	ENSMUSG00000036093	Arl5a	2410015N24Rik|2810410P22Rik|AA408731|AW610751|Arl5|T25534	ADP-ribosylation factor-like 5A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-104863538-2	chr13	104863465	104863665	+	642.0	f0_balb.idr|f1_balb.idr	exon (NM_029984, exon 1 of 3)	exon (NM_029984, exon 1 of 3)	328.0	NM_029984	77803.0	Mm.159995	NM_029984	ENSMUSG00000042655	Fam159b	A930021C24Rik|Shisal2b	family with sequence similarity 159, member B	protein-coding	-1.7024385483431	-1.81249224917775	-1.82134771053534	-1.82862185015837	-1.70038292649591	-1.81057323376012	-1.81934302819017	-1.82731978264371	0.0376840119903864	0.991491645451152	1
Merged-chr6-99540830-4	chr6	99540728	99540928	+	999.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19835.0	NM_001347345	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-122657913-4	chr6	122657800	122658000	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31476.0	NM_139218	73708.0	Mm.27982	NM_139218	ENSMUSG00000046323	Dppa3	2410075G02Rik|PCG7|PGC7|Stella	developmental pluripotency-associated 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-45033736-4	chr17	45033626	45033826	+	990.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178652, intron 7 of 11)	intron (NM_178652, intron 7 of 11)	-152841.0	NM_029257	75341.0	Mm.386821	NM_029257		4930564C03Rik	-	RIKEN cDNA 4930564C03 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-120364744-3	chr6	120364614	120364814	+	891.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045558)	promoter-TSS (NR_045558)	-345.0	NR_045558	67200.0	Mm.45767	NM_026028	ENSMUSG00000030177	Ccdc77	2400002C23Rik|2700091N06Rik|AV168274	coiled-coil domain containing 77	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-40894139-4	chr3	40894039	40894239	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026622)	promoter-TSS (NM_026622)	-138.0	NM_026622	269423.0	Mm.32373	NM_026622	ENSMUSG00000037818	Abhd18	2310068E01Rik|3110057O12Rik|AI645591	abhydrolase domain containing 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139769636-2	chr5	139769536	139769736	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026748, intron 10 of 46)	intron (NM_026748, intron 10 of 46)	-1693.0	NR_106004	102465628.0		NR_106004	ENSMUSG00000098574	Mir7037	Gm27447|mmu-mir-7037	microRNA 7037	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-66383801-2	chr7	66383701	66383901	+	888.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_146191, intron 1 of 33)	intron (NM_146191, intron 1 of 33)	-2077.0	NR_106024	102465640.0		NR_106024	ENSMUSG00000098353	Mir7057	Gm27550|mmu-mir-7057	microRNA 7057	ncRNA	3.64931447119768	3.360109874014	2.88368404870403	1.41338178761087	3.01304882067157	3.46251690485752	2.53699553387497	1.42143962305554	-0.434845180509806	0.626027426277371	0.980912176761026
Merged-chr10-50704385-2	chr10	50704285	50704485	+	671.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_198007, intron 16 of 41)	intron (NM_198007, intron 16 of 41)	111716.0	NM_198007	77987.0	Mm.222497	NM_198007	ENSMUSG00000038774	Ascc3	ASC1p200|B630009I04Rik|BC023451|D430001L07Rik|D630041L21|Helic1|RNAH	activating signal cointegrator 1 complex subunit 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-93166411-2	chr2	93166311	93166511	+	752.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21137.0	NM_001356536	277414.0	Mm.41033	NM_001025246	ENSMUSG00000068735	Trp53i11	Tp53i11	transformation related protein 53 inducible protein 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-24505250-4	chr9	24505176	24505376	+	999.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2136.0	NM_172920	244745.0	Mm.38526	NM_172920	ENSMUSG00000043067	Dpy19l1	1100001I19Rik|6030402K12|AI225861|AW558481	dpy-19-like 1 (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-78199274-3	chr13	78199178	78199378	+	874.9722289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010151)	promoter-TSS (NM_010151)	-405.0	NM_010151	13865.0	Mm.439653	NM_010151	ENSMUSG00000069171	Nr2f1	COUP-TF1|COUP-TFI|COUPTFA|EAR-3|EAR3|Erbal3|SVP44|Tcfcoup1	nuclear receptor subfamily 2, group F, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-29523862-3	chr7	29523771	29523971	+	950.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18411.0	NM_001081028	74206.0	Mm.447042	NM_001081028	ENSMUSG00000030583	Sipa1l3	2610511M17Rik	signal-induced proliferation-associated 1 like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-136640122-3	chr1	136640020	136640220	+	880.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15219.0	NM_001160251	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99002629-2	chr15	99002529	99002729	+	668.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17B|LTR|ERVK	16664.0	NR_045991	75951.0	Mm.441657	NR_045991	ENSMUSG00000097587	4930578M01Rik	3010001K12Rik	RIKEN cDNA 4930578M01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-77269498-2	chr5	77269398	77269598	+	756.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011263, intron 2 of 3)	ID_B1|SINE|B4	-3259.0	NR_039557	100628577.0		NR_039557	ENSMUSG00000093061	Mir5098	mmu-mir-5098|mu-mir-5098	microRNA 5098	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-86145046-7	chr17	86144892	86145092	+	953.714294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030133, intron 1 of 20)	CpG	183.0	NM_030133	78586.0	Mm.146236	NM_030133	ENSMUSG00000024135	Srbd1	AI461933|C85414|D530025C17Rik	S1 RNA binding domain 1	protein-coding	1.56706361474991	1.59704410661844	0.77865632268028	1.25556506394364	1.49954300538496	0.794478469950617	0.781526233715242	1.26259717655637	-0.835522406555788	0.563324317640563	0.960367595640396
Merged-chr8-80272695-3	chr8	80272607	80272807	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-214699.0	NM_020259	15245.0	Mm.254493	NM_020259	ENSMUSG00000064325	Hhip	Hhip1	Hedgehog-interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191075441-5	chr1	191075295	191075495	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198654, intron 4 of 5)	HAL1|LINE|L1	12374.0	NM_198654	381318.0	Mm.32504	NM_198654	ENSMUSG00000062510	Nsl1	4833432M17Rik|AI451597|Gm105|Gm984	NSL1, MIS12 kinetochore complex component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-3930762-2	chr11	3930662	3930862	+	630.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001130458, intron 2 of 9)	intron (NM_001130458, intron 2 of 9)	1199.0	NM_001130459	21452.0	Mm.20948	NM_015749	ENSMUSG00000020432	Tcn2	AW208754|Tcn-2	transcobalamin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-9022639-2	chr3	9022539	9022739	+	552.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER68-int|LTR|ERVL	-17916.0	NM_001357075	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-88368852-1	chr10	88368752	88368952	+	590.0	f0_balb.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-10560.0	NM_001004164	432486.0	Mm.335190	NM_001004164	ENSMUSG00000035311	Gnptab	EG432486|mKIAA1208	N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46343925-4	chr19	46343808	46344008	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	1146.0	NR_030468	751550.0		NR_030468	ENSMUSG00000070127	Mir146b	Mirn146b|mir-146b	microRNA 146b	ncRNA	2.29058146557936	1.65712931017951	2.37759233298001	1.57319861878877	2.75807710183474	2.21953730155596	2.59892109659833	2.20950531954665	1.0399854567316	0.239641196055531	0.736299905431086
Merged-chr2-6464194-2	chr2	6464094	6464294	+	627.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	111458.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135957631-2	chr4	135957531	135957731	+	586.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357530, intron 6 of 9)	B1_Mur4|SINE|Alu	-6094.0	NM_001356493	74246.0	Mm.247946	NM_178389	ENSMUSG00000028671	Gale	2310002A12Rik|AI323962	galactose-4-epimerase, UDP	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-103018817-2	chr3	103018717	103018917	+	954.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur2|SINE|Alu	-1729.0	NM_001310693	229663.0	Mm.277713	NM_144901	ENSMUSG00000068823	Csde1	AA960392|BC016898|D3Jfr1|mKIAA0885|unr	cold shock domain containing E1, RNA binding	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-34754316-4	chr2	34754213	34754413	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_151469, exon 2 of 27)	non-coding (NR_151469, exon 2 of 27)	919.0	NM_001356441	66691.0	Mm.156452	NM_025709	ENSMUSG00000026867	Gapvd1	2010005B09Rik|4432404J10Rik|AW108497|Gapex-5|RAP6|RME-6|mKIAA1521	GTPase activating protein and VPS9 domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83661607-2	chr11	83661507	83661707	+	875.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013652)	promoter-TSS (NM_013652)	-977.0	NM_013652	20303.0	Mm.244263	NM_013652	ENSMUSG00000018930	Ccl4	AT744.1|Act-2|MIP-1B|Mip1b|Scya4	chemokine (C-C motif) ligand 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-98877174-2	chr7	98877074	98877274	+	865.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38329.0	NM_001285795	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-38661888-4	chr15	38661799	38661999	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025494)	promoter-TSS (NM_025494)	-5.0	NM_025494	66335.0	Mm.276618	NM_025494	ENSMUSG00000022295	Atp6v1c1	1700025B18Rik|U13839	ATPase, H+ transporting, lysosomal V1 subunit C1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-127391569-4	chr2	127391485	127391685	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD-int|LTR|ERVL-MaLR	28299.0	NM_009633	11552.0	Mm.347390	NM_009633	ENSMUSG00000058620	Adra2b	Adra-2b|[a]2B|a2b-AR|alpha2-C2|alpha2B	adrenergic receptor, alpha 2b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-53085333-2	chr14	53085233	53085433	+	736.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45867.0	NR_155501	102632039.0	Mm.410779	NR_155501		Gm30214	-	predicted gene, 30214	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-61416877-4	chr18	61416747	61416947	+	664.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16416.0	NM_133249	170826.0	Mm.415302	NM_133249	ENSMUSG00000033871	Ppargc1b	4631412G21Rik|Perc	peroxisome proliferative activated receptor, gamma, coactivator 1 beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-27450279-2	chr7	27450194	27450394	+	586.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144923, intron 1 of 4)	intron (NM_144923, intron 1 of 4)	-2124.0	NM_001290525	233016.0	Mm.24021	NM_144923	ENSMUSG00000040466	Blvrb	-	biliverdin reductase B (flavin reductase (NADPH))	protein-coding	0.547210532056516	-0.261328531515971	-0.266502839887733	-0.270508793779788	-0.276191069882954	-0.260164892567738	0.345108915856049	-0.269808076326264	-0.579496324804084	0.821413804806325	1
Merged-chr5-137770919-2	chr5	137770819	137771019	+	946.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7985.0	NM_001356989	69871.0	Mm.276058	NM_027242	ENSMUSG00000029725	Ppp1r35	2010007H12Rik|2010011D20Rik|AL024004	protein phosphatase 1, regulatory subunit 35	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-32551750-2	chr11	32551610	32551810	+	898.5	f0_balb.idr|f1_balb.idr	intron (NM_009288, intron 1 of 18)	intron (NM_009288, intron 1 of 18)	18444.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	0.676914263727313	1.40877374320852	0.702829001512142	1.18415570603877	0.998573735552972	0.717953821292231	1.67086771990975	1.42220129763081	0.918440915276537	0.5389108766633	0.954403851908463
Merged-chr14-76203574-2	chr14	76203474	76203674	+	601.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-47888.0	NR_152108	72893.0	Mm.233565	NR_152108		2900040C04Rik	-	RIKEN cDNA 2900040C04 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-22138741-2	chr9	22138641	22138841	+	633.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2995.0	NM_001102405	11433.0	Mm.46354	NM_007388	ENSMUSG00000001348	Acp5	TRACP|TRAP	acid phosphatase 5, tartrate resistant	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-61141807-1	chr1	61141707	61141907	+	606.0	f1_balb.idr	Intergenic	Intergenic	163893.0	NM_017480	54167.0	Mm.42044	NM_017480	ENSMUSG00000026009	Icos	AILIM|CCLP|CRP-1|H4|Ly115	inducible T cell co-stimulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-100417070-2	chr5	100416969	100417169	+	632.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026969)	promoter-TSS (NM_026969)	-835.0	NM_001359332	69162.0	Mm.18634	NM_026969	ENSMUSG00000035325	Sec31a	1810024J13Rik|ABP125|ABP130|AU042160|HSPC275|Sec31l1	Sec31 homolog A (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-102243605-4	chr15	102243494	102243694	+	943.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011244, intron 3 of 9)	intron (NM_011244, intron 3 of 9)	2906.0	NM_001042727	19411.0	Mm.1273	NM_011244	ENSMUSG00000001288	Rarg	Nr1b3|RAR-gamma|RARD|RARgamma2	retinoic acid receptor, gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-80147407-2	chr11	80147307	80147507	+	802.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5254.0	NM_183275	68550.0	Mm.18466	NM_183275	ENSMUSG00000046909	Tefm	1110002N22Rik	transcription elongation factor, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-79686788-2	chr12	79686688	79686888	+	659.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 8 of 10)	intron (NM_009014, intron 8 of 10)	237945.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-116125856-2	chr3	116125797	116125997	+	647.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_011693, intron 3 of 8)	intron (NM_011693, intron 3 of 8)	3791.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-136682535-2	chr1	136682435	136682635	+	722.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045324)	promoter-TSS (NR_045324)	-861.0	NR_045324	100503460.0	Mm.30630	NR_045324	ENSMUSG00000097113	Gm19705	-	predicted gene, 19705	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-21734998-4	chr13	21734891	21735091	+	985.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178210)	promoter-TSS (NM_178210)	-43.0	NM_178210	319159.0		NM_178210	ENSMUSG00000067455	Hist1h4j	-	histone cluster 1, H4j	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139716856-2	chr5	139716756	139716956	+	824.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_174850, intron 5 of 16)	intron (NM_174850, intron 5 of 16)	19477.0	NM_174850	231830.0	Mm.240510	NM_174850	ENSMUSG00000036718	Micall2	A930021H16Rik|JRAB|MICAL-L2|mFLJ00139	MICAL-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127635780-2	chr10	127635680	127635880	+	662.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-7206.0	NM_009284	20852.0	Mm.121721	NM_009284	ENSMUSG00000002147	Stat6	-	signal transducer and activator of transcription 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117471884-2	chr10	117471820	117472020	+	540.0	f0_balb.idr|f1_c57bl6.idr	Intergenic	RMER5|LTR|ERV1	-24485.0	NR_152734	102634600.0	Mm.399106	NR_152734	ENSMUSG00000112344	Gm32141	-	predicted gene, 32141	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-155121576-1	chr1	155121476	155121676	+	557.0	f0_c57.idr	Intergenic	L1_Mus4|LINE|L1	-21940.0	NM_010500	15939.0	Mm.12246	NM_010500	ENSMUSG00000056708	Ier5	-	immediate early response 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72141396-4	chr6	72141294	72141494	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001035228, intron 3 of 6)	intron (NM_001035228, intron 3 of 6)	-18197.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-34369781-4	chr5	34369696	34369896	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001243123)	promoter-TSS (NM_001243123)	-137.0	NM_001243123	231128.0	Mm.286885	NM_001030306	ENSMUSG00000037210	Fam193a	-	family with sequence similarity 193, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-55444988-2	chr11	55444888	55445088	+	685.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16220.0	NM_009720	11927.0	Mm.217759	NM_009720	ENSMUSG00000018585	Atox1	AI256639|Atx1	antioxidant 1 copper chaperone	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-115463150-4	chr6	115463064	115463264	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001127330, exon 6 of 8)	exon (NM_001127330, exon 6 of 8)	41098.0	NM_011146	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27757715-3	chr2	27757624	27757824	+	883.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290481, intron 8 of 9)	intron (NM_001290481, intron 8 of 9)	47141.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-110394169-3	chr7	110394055	110394255	+	724.866638	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177324, intron 17 of 40)	MTC|LTR|ERVL-MaLR	172452.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122111641-2	chr5	122111541	122111741	+	918.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_183307, intron 10 of 12)	intron (NM_183307, intron 10 of 12)	10690.0	NM_010861	17906.0	Mm.1529	NM_010861	ENSMUSG00000013936	Myl2	MLC-2|MLC-2s/v|MLC-2v|Mlc2v|Mylpc	myosin, light polypeptide 2, regulatory, cardiac, slow	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-12457888-1	chr19	12457788	12457988	+	1000.0	f0_c57.idr	Intergenic	Intergenic	-2891.0	NM_010821	17476.0	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	4.45044071877905	4.60865661668697	5.25913856218326	3.73196276717817	5.18287504226849	5.41610510827428	3.79071298346341	5.21377245735294	0.500462142917745	0.251815826824013	0.749698831323701
Merged-chr9-107612313-4	chr9	107612241	107612441	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3100.0	NM_001291539	20347.0	Mm.4083	NM_009153	ENSMUSG00000057969	Sema3b	SemA|Semaa|sema5|semaV	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-33898177-1	chr17	33898077	33898277	+	601.0	f1_c57bl6.idr	Intergenic	RLTR42-int|LTR|ERVK	-6958.0	NR_040470	474160.0	Mm.206186	NR_040470	ENSMUSG00000092349	Platr17	-	pluripotency associated transcript 17	ncRNA	-0.138530384946678	-0.121439335265715	0.572083992299075	-0.131334641751421	0.0175029689719979	-0.120184750859446	0.5848984598151	-0.130579485230939	0.250035067944651	0.913806262950358	1
Merged-chr2-30806238-2	chr2	30806138	30806338	+	829.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-1730.0	NM_001356435	66617.0	Mm.33167	NM_170592	ENSMUSG00000026857	Ntmt1	2610205E22Rik|AL033331|AL033332|Mettl11a|NTM1A	N-terminal Xaa-Pro-Lys N-methyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-108080217-2	chr3	108080117	108080317	+	630.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289719, intron 5 of 18)	intron (NM_001289719, intron 5 of 18)	5185.0	NM_001346665	109674.0	Mm.274335	NM_028779	ENSMUSG00000027889	Ampd2	1200014F01Rik|AI552571|Ampd-2|m4521Dajl	adenosine monophosphate deaminase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-110236318-4	chr7	110236229	110236429	+	905.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009302, intron 1 of 11)	intron (NM_009302, intron 1 of 11)	14626.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-9878577-2	chr1	9878477	9878677	+	570.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133220, intron 7 of 17)	B4A|SINE|B4	-30061.0	NM_177722	240697.0	Mm.259800	NM_177722	ENSMUSG00000046101	Mcmdc2	6030422M02Rik	minichromosome maintenance domain containing 2	protein-coding	-0.645416232211692	-0.884889443121497	-0.891701928695103	-0.893692749145351	-0.758591294065144	-0.88234348775387	-0.891131237213429	-0.484024785826157	1.04596758978027	0.720676297703784	1
Merged-chr15-6396133-4	chr15	6396046	6396246	+	953.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037905, intron 1 of 13)	intron (NM_001037905, intron 1 of 13)	9398.0	NM_001310446	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99088472-4	chr15	99088354	99088554	+	985.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024702)	promoter-TSS (NM_001024702)	-726.0	NM_001024702	239659.0	Mm.309917	NM_001024702	ENSMUSG00000001076	C1ql4	C1qtnf11|CTRP11	complement component 1, q subcomponent-like 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-70095205-4	chr10	70095128	70095328	+	841.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1893.0	NM_001111121	76551.0	Mm.281741	NM_001111121	ENSMUSG00000048701	Ccdc6	2810012H18Rik|AA536681|AA960498|AW061011	coiled-coil domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-75878108-3	chr13	75878006	75878206	+	953.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028493, intron 9 of 11)	intron (NM_028493, intron 9 of 11)	38220.0	NM_053108	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	2.45287492989969	3.66489536044233	4.48765588979994	3.02991924295848	3.51344462156178	4.61346499192964	3.88055098829487	3.89324342077409	0.573007181319748	0.329831097729264	0.831942889324137
Merged-chr6-87530400-4	chr6	87530370	87530570	+	972.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037727, intron 1 of 10)	intron (NM_001037727, intron 1 of 10)	2789.0	NM_001037727	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	1.79456422322416	2.19837929107102	1.27062057895003	3.17001980246419	1.81055765844894	2.21573664178815	1.97341306724443	3.18626304716283	0.21456887477374	0.825519302203941	0.998431161219273
Merged-chr3-52243813-2	chr3	52243723	52243923	+	741.75	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-24514.0	NM_019739	56458.0	Mm.29891	NM_019739	ENSMUSG00000044167	Foxo1	AI876417|Afxh|FKHR|Fkhr1|Foxo1a	forkhead box O1	protein-coding	3.20679731047112	4.00304691711793	1.55337597196583	3.30784226670149	2.11242158859072	4.37396567387936	2.66788597435742	3.24227241717887	0.173118611686676	0.827551354849749	0.998431161219273
Merged-chr8-13641414-1	chr8	13641314	13641514	+	713.0	f0_balb.idr	intron (NM_009025, intron 1 of 23)	intron (NM_009025, intron 1 of 23)	36173.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126563386-2	chr8	126563286	126563486	+	586.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30050.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3525871-1	chr4	3525771	3525971	+	765.0	f1_c57bl6.idr	Intergenic	Intergenic	-11219.0	NR_037306	100499523.0		NR_037306	ENSMUSG00000094253	Mir3471-2	mmu-mir-3471-2	microRNA 3471-2	ncRNA	-1.53362919331644	-1.50201671710775	-1.51157659084044	-1.08120497225282	-1.53141005593807	-1.49994505258991	-1.50941244497383	-1.51802371459528	-1.94474658522739	0.577200604274218	1
Merged-chr14-32167532-3	chr14	32167456	32167656	+	909.2999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019744, intron 1 of 9)	intron (NM_019744, intron 1 of 9)	1767.0	NM_019744	27057.0	Mm.371598	NM_019744	ENSMUSG00000056234	Ncoa4	ARA70|Rfg	nuclear receptor coactivator 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-36023771-4	chr17	36023688	36023888	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015618, intron 1 of 1)	intron (NR_015618, intron 1 of 1)	-3228.0	NM_008207	15042.0	Mm.439654	NM_008207	ENSMUSG00000053835	H2-T24	H-2T24	histocompatibility 2, T region locus 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-96825366-1	chr11	96825266	96825466	+	604.0	f1_balb.idr	intron (NM_008686, intron 2 of 4)	intron (NM_008686, intron 2 of 4)	-1239.0	NM_001130451	18023.0	Mm.6743	NM_008686	ENSMUSG00000038615	Nfe2l1	AA408798|AW212678|LCR-F1|Lcrf1|NRF1|TCF-11|TCF11	nuclear factor, erythroid derived 2,-like 1	protein-coding	0.525993780606791	0.179722090031415	0.174012691295608	0.169614806485544	0.53445014418012	0.785212149741171	0.17527103951244	0.587916320755614	2.00826141184372	0.319610999422603	1
Merged-chr8-70896816-1	chr8	70896716	70896916	+	910.0	f1_balb.idr	promoter-TSS (NR_002901)	promoter-TSS (NR_002901)	627.0	NM_029751	76808.0	Mm.379251	NM_029751	ENSMUSG00000045128	Rpl18a	2510019J09Rik	ribosomal protein L18A	protein-coding	0.888666374713072	1.15538417979623	1.22868117634283	0.93994866317504	0.597717320302184	0.629348580948071	1.4477420929514	0.792420224379764	-0.598902792663217	0.688897239752116	0.996533206832645
Merged-chr11-96127189-2	chr11	96127089	96127289	+	541.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6597.0	NM_172799	237930.0	Mm.249912	NM_172799	ENSMUSG00000038756	Ttll6	4932418K24Rik|D11Moh43e|D11Moh44e|t8130b59	tubulin tyrosine ligase-like family, member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-40482649-4	chr9	40482532	40482732	+	769.708313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357617, intron 1 of 20)	intron (NM_001357617, intron 1 of 20)	-26868.0	NM_172768	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	-1.18168469194181	-1.15762136968968	-1.16824599128578	-1.17697337180399	-0.705222168910091	-1.15531896986813	-1.1658408098415	-1.01281529573356	2.56112959364474	0.434927719140263	1
Merged-chr7-45447640-6	chr7	45447485	45447685	+	770.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030678, intron 10 of 15)	intron (NM_030678, intron 10 of 15)	12301.0	NM_010240	14325.0	Mm.30357	NM_010240	ENSMUSG00000050708	Ftl1	Ftl|Ftl-1|L-ferritin	ferritin light polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27572999-2	chr17	27572899	27573099	+	563.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7272.0	NM_001002895	106672.0	Mm.61488	NM_001002895	ENSMUSG00000062753	AI413582	AI854251|Smim29	expressed sequence AI413582	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-80060508-3	chr12	80060393	80060593	+	898.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	52520.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-53264296-4	chr18	53264182	53264382	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029394, intron 1 of 6)	intron (NM_029394, intron 1 of 6)	18620.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94486192-3	chr10	94486112	94486312	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 2 of 4)	intron (NM_001359762, intron 2 of 4)	-28645.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-31109419-4	chr6	31109326	31109526	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110471, intron 3 of 3)	intron (NR_110471, intron 3 of 3)	-46333.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-101718691-3	chr12	101718581	101718781	+	874.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001082976)	promoter-TSS (NM_001082976)	-158.0	NM_001082976	74413.0	Mm.275939	NM_028924	ENSMUSG00000021187	Tc2n	4933406D09Rik|Mtac2d1|Tac2-N	tandem C2 domains, nuclear	protein-coding	2.4357951809312	3.1553013160071	2.74781472518097	2.89127496029263	1.75612956614863	1.54854459584516	1.21021567151262	1.1753012532936	-3.58230971689782	0.000529355728222383	0.0116731308926822
Merged-chr13-94977258-7	chr13	94977175	94977375	+	794.642883	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172590, intron 1 of 12)	intron (NM_172590, intron 1 of 12)	931.0	NM_172590	218460.0	Mm.33856	NM_172590	ENSMUSG00000042015	Wdr41	B830029I03Rik|MSTP048	WD repeat domain 41	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-21954277-2	chr3	21954177	21954377	+	598.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-122375.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-170508995-4	chr2	170508894	170509094	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040367, intron 1 of 2)	intron (NR_040367, intron 1 of 2)	-2236.0	NM_001110152	109054.0	Mm.28808	NM_001013369	ENSMUSG00000052033	Pfdn4	0610025M10Rik|1810063B06Rik|C-1|C1|Pfd4	prefoldin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-59074982-4	chr19	59074886	59075086	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114312, intron 1 of 16)	intron (NM_001114312, intron 1 of 16)	1083.0	NM_175172	71653.0	Mm.37338	NM_175172	ENSMUSG00000041362	Shtn1	4930506M07Rik|Shootin1|mKIAA1598	shootin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101027840-4	chr7	101027719	101027919	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15766.0	NM_001302346	18442.0	Mm.3000	NM_008773	ENSMUSG00000032860	P2ry2	P2U1|P2Y2	purinergic receptor P2Y, G-protein coupled 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-146720156-2	chr5	146720056	146720256	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	74800.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-119070645-3	chr10	119070532	119070732	+	838.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20133.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-88161616-2	chr8	88161516	88161716	+	696.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_172757, intron 11 of 14)	B3|SINE|B2	23410.0	NR_106039	102465649.0		NR_106039	ENSMUSG00000099080	Mir7071	Gm27623|mmu-mir-7071	microRNA 7071	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-156420867-6	chr2	156420817	156421017	+	912.93335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013510)	promoter-TSS (NM_013510)	8.0	NM_001291123	13821.0	Mm.20852	NM_013510	ENSMUSG00000027624	Epb41l1	4.1N|Epb4.1l1|NBL1|mKIAA0338	erythrocyte membrane protein band 4.1 like 1	protein-coding	0.91156361897071	1.79115326550004	0.595782015874342	0.796370873772903	1.69904762706753	1.05952115048432	0.598949253289113	0.586541765924303	-0.142076014611251	0.926726923054492	0.998431161219273
Merged-chr2-73280869-2	chr2	73280769	73280969	+	681.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8943.0	NM_001005343	381373.0	Mm.330293	NM_001005343	ENSMUSG00000068859	Sp9	-	trans-acting transcription factor 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-95511417-4	chr9	95511281	95511481	+	881.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357977, intron 1 of 25)	CpG	615.0	NM_001357975	67958.0	Mm.292742	NM_026476	ENSMUSG00000032407	U2surp	2610101N10Rik|AU023006|Sr140	U2 snRNP-associated SURP domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-31457159-4	chr6	31457053	31457253	+	917.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013791, intron 8 of 17)	MTEb-int|LTR|ERVL-MaLR	58325.0	NM_013791	27418.0	Mm.238038	NM_013791	ENSMUSG00000025609	Mkln1	A130067F06Rik|AU015903|BB154892	muskelin 1, intracellular mediator containing kelch motifs	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-13185008-2	chr1	13184908	13185108	+	696.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008678, intron 6 of 22)	intron (NM_008678, intron 6 of 22)	-57845.0	NM_001081209	383491.0	Mm.309380	NM_001081209	ENSMUSG00000042414	Prdm14	-	PR domain containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128627318-2	chr10	128627218	128627418	+	849.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013765)	promoter-TSS (NM_013765)	-812.0	NM_013765	27370.0	Mm.32118	NM_013765	ENSMUSG00000025362	Rps26	-	ribosomal protein S26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-151757303-3	chr1	151757190	151757390	+	746.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311165, intron 1 of 20)	intron (NM_001311165, intron 1 of 20)	1916.0	NM_001311166	66967.0	Mm.337691	NM_001039644	ENSMUSG00000043019	Edem3	2310050N11Rik	ER degradation enhancer, mannosidase alpha-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191110638-3	chr1	191110562	191110762	+	885.694458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12248.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	0.612554036702671	0.867180140579923	0.8292178711584	0.465082505292075	1.24711304143623	0.483872098507064	1.31017762894753	0.466362646295902	1.24764342522269	0.45435866235582	1
Merged-chr5-148812188-2	chr5	148812093	148812293	+	791.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34230.0	NR_131106	78015.0	Mm.243839	NR_131106	ENSMUSG00000085740	4930505K14Rik	-	RIKEN cDNA 4930505K14 gene	ncRNA	1.30649769941083	0.791420437784572	2.08286406261414	2.78473434062615	0.714393828994303	1.09289458783236	1.46308681996704	0.748736181058191	-2.80297078846074	0.0375719231343216	0.275729541075691
Merged-chr16-91547027-4	chr16	91546935	91547135	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008338)	promoter-TSS (NM_008338)	-59.0	NM_008338	15980.0	Mm.249364	NM_008338	ENSMUSG00000022965	Ifngr2	Ifgr2|Ifgt	interferon gamma receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94059798-4	chr10	94059689	94059889	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053072, intron 2 of 20)	intron (NM_053072, intron 2 of 20)	23788.0	NM_053072	13998.0	Mm.269596	NM_053072	ENSMUSG00000020021	Fgd6	AA123052|Etohd4|ZFYVE24	FYVE, RhoGEF and PH domain containing 6	protein-coding	6.28443049278302	5.05741732305446	4.55429455517989	4.89343760330975	6.19906620579958	5.99351565752887	4.58954992108098	5.79380125315238	0.43426997914738	0.281025587913941	0.78400185225177
Merged-chr7-112285780-3	chr7	112285740	112285940	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001193305, intron 3 of 25)	intron (NM_001193305, intron 3 of 25)	60004.0	NM_001193305	320878.0	Mm.52312	NM_177282	ENSMUSG00000038244	Mical2	5330438E18Rik|9530064J02|MICAL-2|mKIAA0750	microtubule associated monooxygenase, calponin and LIM domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-148556738-3	chr5	148556693	148556893	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4005.0	NM_001359199	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	-0.548148127287174	-0.534994719662482	0.263484604031121	-0.542612953676498	-0.547323257953237	-0.150462351890654	-0.53834130381974	-0.542031808161518	-1.50711037112802	0.587523960093481	1
Merged-chr7-99164053-3	chr7	99163962	99164162	+	872.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026384, intron 4 of 7)	intron (NM_026384, intron 4 of 7)	18651.0	NM_026384	67800.0	Mm.180189	NM_026384	ENSMUSG00000030747	Dgat2	0610010B06Rik|ARAT|DGAT-2	diacylglycerol O-acyltransferase 2	protein-coding	2.92110563142213	2.34181827303925	3.30226228479473	2.61036603561426	2.94448557678663	2.79590336321611	2.44105584678734	2.83234579959044	-0.155982952980451	0.823721909176629	0.998431161219273
Merged-chr12-38845986-1	chr12	38845886	38846086	+	550.0	f0_balb.idr	intron (NM_001347379, intron 7 of 11)	intron (NM_001347379, intron 7 of 11)	62275.0	NM_001163154	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-24960190-3	chr13	24960087	24960287	+	646.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008156, intron 8 of 25)	intron (NM_008156, intron 8 of 25)	17035.0	NM_008156	14756.0	Mm.291831	NM_008156	ENSMUSG00000021340	Gpld1	6330541J12Rik|AW546131	glycosylphosphatidylinositol specific phospholipase D1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-75788393-4	chr13	75788286	75788486	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51499.0	NM_001360151	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	4.18171290868071	3.92365423082409	2.88267390865067	4.05852062167748	4.29137072603707	4.21682063685554	3.58475719004252	2.80831578929212	-0.00485958916204208	0.993012189564238	0.998431161219273
Merged-chr19-29371383-2	chr19	29371283	29371483	+	612.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021893, intron 1 of 6)	intron (NM_021893, intron 1 of 6)	3945.0	NM_021893	60533.0	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-37136208-3	chr10	37136102	37136302	+	864.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008538, exon 2 of 2)	exon (NM_008538, exon 2 of 2)	2724.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-119919455-2	chr1	119919384	119919584	+	689.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6316.0	NM_175106	66343.0	Mm.49942	NM_175106	ENSMUSG00000036975	Tmem177	2300008B03Rik	transmembrane protein 177	protein-coding	0.201342749241175	0.921492797052463	0.425092245701649	0.21288345732587	0.520781137258773	1.25733643686663	0.221687779590588	0.214086319067813	0.834117246080682	0.660147183527948	1
Merged-chr1-163312313-2	chr1	163312213	163312413	+	788.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025570, intron 1 of 2)	CpG	1337.0	NM_011127	18933.0	Mm.288642	NM_011127	ENSMUSG00000026586	Prrx1	A230024N07Rik|AA755424|AI385634|AI843499|K-2|Pmx|Pmx1|Prx1|mHox	paired related homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-28262797-3	chr6	28262692	28262892	+	867.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1191.0	NM_001081678	627049.0	Mm.84441	NM_001081678	ENSMUSG00000039841	Zfp800	AA407452|Znf800	zinc finger protein 800	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-63776462-1	chr5	63776362	63776562	+	543.0	f1_balb.idr	intron (NM_177006, intron 3 of 6)	intron (NM_177006, intron 3 of 6)	-36033.0	NM_029554	76261.0	Mm.38143	NM_029554	ENSMUSG00000060512	0610040J01Rik	AI662686	RIKEN cDNA 0610040J01 gene	protein-coding	-0.931523928027181	-1.04752078468025	-1.05827297226483	-1.06352491065276	-0.808670269021613	-1.04519074077685	-1.05583891267692	-0.770661429139923	1.59684673343255	0.596139227211169	1
Merged-chr16-10950730-4	chr16	10950633	10950833	+	970.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35936.0	NR_131135	545180.0	Mm.373756	NR_131135	ENSMUSG00000095369	Gm21859	-	predicted gene, 21859	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-10969640-4	chr16	10969521	10969721	+	937.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019980, intron 1 of 3)	intron (NM_019980, intron 1 of 3)	23500.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-42914432-3	chr10	42914352	42914552	+	820.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359264, intron 2 of 7)	Charlie18a|DNA|hAT-Charlie	53940.0	NM_001359264	268297.0	Mm.98731	NM_172938	ENSMUSG00000044770	Scml4	9330161D17|mFLJ00197	Scm polycomb group protein like 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118016397-2	chr11	118016297	118016497	+	725.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_151726, intron 8 of 9)	intron (NR_151726, intron 8 of 9)	14127.0	NR_105898	102466768.0		NR_105898	ENSMUSG00000098958	Mir6933	Gm27856|mmu-mir-6933	microRNA 6933	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-102558068-4	chr4	102557964	102558164	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019840, intron 5 of 14)	intron (NM_019840, intron 5 of 14)	-11996.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-29609896-4	chr6	29609807	29610007	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347079)	promoter-TSS (NM_001347079)	-58.0	NM_001347079	320938.0	Mm.276381	NM_177296	ENSMUSG00000012535	Tnpo3	5730544L10Rik|C430013M08Rik|C81142|D6Ertd313e|Trn-SR|mKIAA4133	transportin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-147527126-2	chr5	147527026	147527226	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028291, intron 10 of 18)	intron (NM_028291, intron 10 of 18)	96970.0	NM_028291	72587.0	Mm.320469	NM_028291	ENSMUSG00000029647	Pan3	2700050F09Rik|A430027N15Rik|AU014670	PAN3 poly(A) specific ribonuclease subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-21197333-2	chr5	21197233	21197433	+	613.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_153365, intron 3 of 26)	L1_Mus2|LINE|L1	11066.0	NM_001359877	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-20263193-1	chr11	20263093	20263293	+	568.0	f0_balb.idr	Intergenic	Intergenic	-13769.0	NM_172260	216543.0	Mm.260314	NM_172260	ENSMUSG00000044066	Cep68	6030463E10Rik|AI481761|BC027174|Kiaa0582	centrosomal protein 68	protein-coding	1.26711089185959	1.66858005303252	0.752759049973397	0.743156868213095	1.46828805486695	0.989105213832484	1.4033601674094	0.935208659293654	0.176314034578019	0.900769293244762	0.998431161219273
Merged-chr8-95908158-2	chr8	95908058	95908258	+	623.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19793.0	NM_010325	14719.0	Mm.230169	NM_010325	ENSMUSG00000031672	Got2	AL022787|FABP-pm|Got-2|Kyat4|mAspAT	glutamatic-oxaloacetic transaminase 2, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-13863176-2	chr16	13863076	13863276	+	541.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039533, intron 8 of 22)	RLTR53_Mm|LTR|ERVK	39969.0	NM_001039533	94184.0	Mm.171484	NM_053181	ENSMUSG00000022680	Pdxdc1	2210010A19Rik|AA415817|Kiaa0251-hp	pyridoxal-dependent decarboxylase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-92466326-4	chr16	92466230	92466430	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081549)	promoter-TSS (NM_001081549)	-161.0	NM_001081549	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-81836204-2	chr7	81836104	81836304	+	806.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR1B|LTR|ERV1	-6773.0	NM_146193	83962.0	Mm.439893	NM_146193	ENSMUSG00000025103	Btbd1	1190005H08Rik	BTB (POZ) domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101425562-2	chr11	101425462	101425662	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026865)	promoter-TSS (NM_026865)	-234.0	NM_001361123	73635.0	Mm.472804	NM_026865	ENSMUSG00000097487	Ptges3l	1110069E20Rik|1700113I22Rik	prostaglandin E synthase 3 like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-35429163-4	chr8	35428983	35429183	+	648.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53342.0	NM_177741	244416.0	Mm.247126	NM_177741	ENSMUSG00000046794	Ppp1r3b	6430576E21|AW821953|GL|PTG	protein phosphatase 1, regulatory (inhibitor) subunit 3B	protein-coding	0.787461888704486	0.918038319422182	0.482218214901444	0.472858495785111	1.044956400105	0.734083199922324	0.484868130123154	1.79170239351446	2.04612878550026	0.204323353091263	0.69167790036705
Merged-chr6-96113055-1	chr6	96112955	96113155	+	548.0	f1_c57bl6.idr	promoter-TSS (NM_182808)	promoter-TSS (NM_182808)	-99.0	NM_182808	320265.0	Mm.489890	NM_182808	ENSMUSG00000059187	Fam19a1	C630007B19Rik|FAM19A1 TAFA-1|TAFA1|Tafa-1	family with sequence similarity 19, member A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-116053708-7	chr4	116053605	116053805	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_028142, exon 1 of 6)	exon (NM_028142, exon 1 of 6)	171.0	NM_028142	72181.0	Mm.282560	NM_028142	ENSMUSG00000028706	Nsun4	2310010O12Rik|2810405F18Rik|AI507900|Shtap	NOL1/NOP2/Sun domain family, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-11395163-4	chr2	11395048	11395248	+	997.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040615, intron 1 of 2)	RLTR25B|LTR|ERVK	3352.0	NR_040615	77543.0	Mm.490670	NR_040615	ENSMUSG00000102674	8030442B05Rik	-	RIKEN cDNA 8030442B05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-68929371-2	chr3	68929271	68929471	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026641, intron 12 of 19)	L1M2|LINE|L1	59785.0	NM_001167996	68725.0	Mm.45741	NM_001167996	ENSMUSG00000046999	1110032F04Rik	AI115547	RIKEN cDNA 1110032F04 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-142334368-3	chr7	142334249	142334449	+	861.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177265, intron 3 of 3)	intron (NM_177265, intron 3 of 3)	30847.0	NM_015809	50775.0	Mm.389990	NM_015809	ENSMUSG00000045236	Krtap5-4	-	keratin associated protein 5-4	protein-coding	-0.406229947251001	-0.537290601732326	-0.540977076033037	-0.54381728943751	-0.547824848862534	0.084283493875113	-0.209005788612982	-0.543321364889382	2.54570265708536	0.328427157856816	1
Merged-chr10-127633248-5	chr10	127633031	127633231	+	878.2000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9855.0	NM_009284	20852.0	Mm.121721	NM_009284	ENSMUSG00000002147	Stat6	-	signal transducer and activator of transcription 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-90726893-1	chr16	90726793	90726993	+	935.6666869999999	f0_balb.idr	intron (NM_025642, intron 1 of 4)	intron (NM_025642, intron 1 of 4)	478.0	NM_025642	66578.0	Mm.180363	NM_025642	ENSMUSG00000022978	Mis18a	2610039C10Rik|2810018N07Rik	MIS18 kinetochore protein A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-82004995-4	chr11	82004866	82005066	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30611.0	NM_011333	20296.0	Mm.290320	NM_011333	ENSMUSG00000035385	Ccl2	AI323594|HC11|JE|MCAF|MCP-1|MCP1|SMC-CF|Scya2|Sigje	chemokine (C-C motif) ligand 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-116209411-2	chr3	116209311	116209511	+	695.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44073.0	NM_022427	64378.0	Mm.40025	NM_022427	ENSMUSG00000068696	Gpr88	AW061286|Strg	G-protein coupled receptor 88	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3054628-2	chr4	3054567	3054767	+	672.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-117416.0	NM_001167534	100312470.0	Mm.480297	NM_001167534	ENSMUSG00000115072	Vmn1r2	Gm11776	vomeronasal 1 receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4207169-4	chr19	4207083	4207283	+	849.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5580.0	NM_011237	19367.0	Mm.277629	NM_011237	ENSMUSG00000024824	Rad9a	Rad9	RAD9 checkpoint clamp component A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45465807-2	chr7	45465707	45465907	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007527, intron 3 of 5)	intron (NM_007527, intron 3 of 5)	1091.0	NM_007527	12028.0	Mm.19904	NM_007527	ENSMUSG00000003873	Bax	-	BCL2-associated X protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-90925668-2	chr16	90925568	90925768	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_026502)	TTS (NM_026502)	9181.0	NM_026502	68001.0	Mm.45374	NM_026502	ENSMUSG00000022972	1110004E09Rik	-	RIKEN cDNA 1110004E09 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-36997857-4	chr16	36997750	36997950	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB8|LINE|L1	-7383.0	NM_001358217	207215.0	Mm.211899	NM_001037321	ENSMUSG00000047746	Fbxo40	9830003A13Rik|mKIAA1195	F-box protein 40	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-104644139-4	chr3	104644038	104644238	+	801.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009196, intron 1 of 4)	RSINE1|SINE|B4	5474.0	NM_009196	20501.0	Mm.9086	NM_009196	ENSMUSG00000032902	Slc16a1	AL022710|Mct1	solute carrier family 16 (monocarboxylic acid transporters), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-17693309-2	chr16	17693209	17693409	+	585.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358404, intron 2 of 16)	intron (NM_001358404, intron 2 of 16)	29591.0	NM_001285886	94112.0	Mm.208970	NM_033609	ENSMUSG00000012114	Med15	A230074L19Rik|AW536074|Pcqap|mPcqap	mediator complex subunit 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-75739270-4	chr7	75739157	75739357	+	803.81665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 29 of 36)	intron (NM_029332, intron 29 of 36)	-109081.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-138913489-2	chr4	138913376	138913576	+	630.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028453, intron 1 of 7)	CpG	471.0	NM_028453	73162.0	Mm.238081	NM_028453	ENSMUSG00000041161	Otud3	3110030K17Rik	OTU domain containing 3	protein-coding	2.98128112645454	2.44070893764036	2.78783745683893	2.51756324251105	2.58878316668015	1.43843442938391	2.89688709644855	1.36336069060344	-0.892545628420013	0.333482724088729	0.833601405219443
Merged-chr7-4071279-4	chr7	4071206	4071406	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8102.0	NM_001302676	52855.0	Mm.290880	NM_178611	ENSMUSG00000055541	Lair1	5133400O11Rik|BB115266|D7Bwg0421e|Lair-1	leukocyte-associated Ig-like receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124497738-2	chr5	124497638	124497838	+	634.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021430, intron 6 of 6)	intron (NM_021430, intron 6 of 6)	14583.0	NM_029532	76167.0	Mm.156035	NM_029532	ENSMUSG00000029402	Snrnp35	6330548G22Rik	small nuclear ribonucleoprotein 35 (U11/U12)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-78382870-3	chr11	78382764	78382964	+	805.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008238, intron 1 of 8)	intron (NM_008238, intron 1 of 8)	3744.0	NM_008238	15218.0	Mm.4496	NM_008238	ENSMUSG00000002057	Foxn1	D11Bhm185e|Fkh19|HFH-11|Hfh11|Whn|nu|nude	forkhead box N1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139463931-1	chr5	139463831	139464031	+	546.0	f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-3397.0	NM_028469	73212.0	Mm.84294	NM_028469	ENSMUSG00000053553	3110082I17Rik	AW411904	RIKEN cDNA 3110082I17 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-91082094-4	chr10	91082003	91082203	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027078)	promoter-TSS (NM_027078)	640.0	NM_001042558	11783.0	Mm.220289	NM_009684	ENSMUSG00000019979	Apaf1	6230400I06Rik|Apaf-1|Apaf1l|fog|mKIAA0413	apoptotic peptidase activating factor 1	protein-coding	4.92170749175399	5.61032809567925	4.92915017606451	4.98919462464722	4.48701319484572	5.43838561562153	4.36631941762967	5.20563646947088	-0.232335375615257	0.518087271096262	0.947641799425091
Merged-chr2-116971139-2	chr2	116971039	116971239	+	668.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	(ATGGTG)n|Simple_repeat|Simple_repeat	70987.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-48308627-1	chr3	48308527	48308727	+	690.0	f0_balb.idr	Intergenic	Lx2A1|LINE|L1	-281868.0	NR_040408	666202.0	Mm.465057	NR_040408	ENSMUSG00000103257	Gm7977	EG666202	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide pseudogene	pseudo	-2.18138529563533	-2.15523716995652	-2.1631445789866	-2.16963996020037	-2.05513010215571	-2.15352360143315	-2.16135451490766	-2.16847729006863	0.759018020146679	0.829933115115583	1
Merged-chr4-57947109-3	chr4	57947015	57947215	+	781.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011660, intron 3 of 4)	GC_rich|Low_complexity|Low_complexity	9296.0	NM_011660	22166.0	Mm.260618	NM_011660	ENSMUSG00000028367	Txn1	ADF|AW550880|Trx1|Txn	thioredoxin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-99333213-2	chr5	99333113	99333313	+	701.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-80286.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-34448024-2	chr19	34447924	34448124	+	754.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27111.0	NM_009890	12642.0	Mm.30824	NM_009890	ENSMUSG00000050370	Ch25h	AI462618|m25OH	cholesterol 25-hydroxylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-128360541-2	chr7	128360441	128360641	+	595.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	57631.0	NM_026418	67865.0	Mm.18635	NM_026418	ENSMUSG00000030844	Rgs10	2310010N19Rik	regulator of G-protein signalling 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80989606-2	chr10	80989506	80989706	+	631.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038655, intron 2 of 3)	intron (NM_001038655, intron 2 of 3)	11759.0	NM_001038655	14708.0	Mm.222496	NM_010319	ENSMUSG00000048240	Gng7	AI840417	guanine nucleotide binding protein (G protein), gamma 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-148931329-2	chr6	148931229	148931429	+	647.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355645, intron 2 of 5)	B1_Mur2|SINE|Alu	13497.0	NM_001355645	56306.0	Mm.18637	NM_019643	ENSMUSG00000039985	Fam60a	Ppcs1|Pptcs1|Sinhcaf|Tera	family with sequence similarity 60, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167473451-2	chr2	167473351	167473551	+	563.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_148929, exon 15 of 17)	exon (NM_148929, exon 15 of 17)	-19194.0	NM_030743	81018.0	Mm.22225	NM_030743	ENSMUSG00000006418	Rnf114	1110008J21Rik|AI225886|AW549494|Zfp228|Zfp313|Znf228	ring finger protein 114	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-89009062-3	chr11	89008845	89009045	+	609.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr	intron (NM_009546, intron 2 of 8)	intron (NM_009546, intron 2 of 8)	9542.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	-0.249678541944135	-0.527459478689031	-0.532004553389112	0.397807428064553	-0.54052734329491	-0.526438029999662	-0.531000175271131	-0.534910372674282	-3.63111422630636	0.169799049144372	1
Merged-chr6-140623487-4	chr6	140623396	140623596	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009637)	promoter-TSS (NM_009637)	-6.0	NM_001005605	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-154574429-3	chr2	154574357	154574557	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4565.0	NM_007891	13555.0	Mm.18036	NM_007891	ENSMUSG00000027490	E2f1	E2F-1|Tg(Wnt1-cre)2Sor|mKIAA4009	E2F transcription factor 1	protein-coding	-0.355079584318885	0.250312554276821	-0.0328200564738488	-0.192117900057863	-0.214096794110729	-0.342287234623335	-0.346224123120886	-0.34957233430467	-2.65535040066762	0.257996447007475	1
Merged-chr5-105625153-1	chr5	105625053	105625253	+	552.0	f1_balb.idr	Intergenic	Intergenic	-74816.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141168016-4	chr7	141167955	141168155	+	934.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001172100, intron 1 of 9)	intron (NM_001172100, intron 1 of 9)	631.0	NM_001172101	107702.0	Mm.197493	NM_145135	ENSMUSG00000038650	Rnh1	AW546468|C80305|RNH	ribonuclease/angiogenin inhibitor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-109493655-3	chr7	109493539	109493739	+	739.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001170913)	promoter-TSS (NM_001170913)	99.0	NM_001170913	330627.0	Mm.183528	NM_181853	ENSMUSG00000031026	Trim66	Kiaa0298-hp|Tif1d	tripartite motif-containing 66	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101463805-2	chr11	101463705	101463905	+	655.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_012037, intron 1 of 5)	intron (NM_012037, intron 1 of 5)	2394.0	NM_012037	26949.0	Mm.29210	NM_012037	ENSMUSG00000034993	Vat1	VAT-1	vesicle amine transport 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-105017600-4	chr3	105017489	105017689	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030249, intron 3 of 5)	intron (NM_030249, intron 3 of 5)	35364.0	NM_001163332	80281.0	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32927080-2	chr2	32926980	32927180	+	578.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_199302, intron 24 of 24)	intron (NM_199302, intron 24 of 24)	34175.0	NM_199302	227738.0	Mm.248037	NM_199302	ENSMUSG00000026792	Lrsam1	-	leucine rich repeat and sterile alpha motif containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-94505358-2	chr16	94505258	94505458	+	568.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007834, intron 4 of 7)	intron (NM_007834, intron 4 of 7)	21271.0	NM_007834	13185.0	Mm.7472	NM_007834	ENSMUSG00000022898	Dscr3	AW538125|Dcra	DSCR3 arrestin fold containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-58393672-4	chr1	58393545	58393745	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025824, intron 1 of 11)	CpG	509.0	NM_025824	66882.0	Mm.21848	NM_025824	ENSMUSG00000051223	Bzw1	1200015E15Rik|mKIAA0005	basic leucine zipper and W2 domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-25207507-1	chr14	25207407	25207607	+	561.0	f1_c57bl6.idr	Intergenic	Intergenic	-64266.0	NR_045718	75862.0	Mm.109191	NR_045718	ENSMUSG00000114916	4930572O13Rik	-	RIKEN cDNA 4930572O13 gene	ncRNA	-0.081247462160813	-0.0551356703296119	1.10913083917041	-0.0701170465456283	-0.0795749455590397	-0.0532617282338311	0.755573749597948	-0.0689608012303409	-0.812420924404256	0.722676259073634	1
Merged-chr10-121389959-1	chr10	121389859	121390059	+	693.0	f1_balb.idr	intron (NM_029364, intron 10 of 13)	intron (NM_029364, intron 10 of 13)	24869.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	2.15513605935816	1.12001865397884	2.8720425949518	1.06759845093298	1.61020976086046	1.40563129285817	2.04615066993098	2.29574923096735	-0.392279872627229	0.731889799784252	0.998431161219273
Merged-chr19-6223876-1	chr19	6223776	6223976	+	565.0	f1_c57bl6.idr	3' UTR (NM_001165919, exon 11 of 11)	3' UTR (NM_001165919, exon 11 of 11)	-2525.0	NM_130453	170458.0	Mm.379306	NM_130453	ENSMUSG00000024784	Gpha2	GPA2|zsig51	glycoprotein hormone alpha 2	protein-coding	0.632019535495467	0.953225719872842	0.30306926506969	0.299123099736764	0.730761422308478	0.637550731912362	0.304202715235238	0.29981037913081	-0.52353136402748	0.786284113598061	1
Merged-chr7-80014037-4	chr7	80013924	80014124	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10790.0	NM_001145999	209225.0	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24170532-2	chr17	24170443	24170643	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361532)	promoter-TSS (NM_001361532)	-865.0	NM_001361531	11984.0	Mm.30155	NM_009729	ENSMUSG00000024121	Atp6v0c	Atp6c|Atp6c2|Atp6l|Atpl|Atpl-rs1|PL16|VATL|Vma3	ATPase, H+ transporting, lysosomal V0 subunit C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-34286778-2	chr5	34286678	34286878	+	566.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001015039, intron 1 of 12)	intron (NM_001015039, intron 1 of 12)	1546.0	NM_001015039	231125.0	Mm.113388	NM_001015039	ENSMUSG00000037224	Zfyve28	9630058O20Rik|Gm146|mKIAA1643	zinc finger, FYVE domain containing 28	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-11489594-2	chr8	11489494	11489694	+	562.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR17B_Mm|LTR|ERVK	-7912.0	NM_001190357	69225.0	Mm.64911	NM_026995	ENSMUSG00000031505	Naxd	0710008K08Rik|2810407E01Rik|Carkd	NAD(P)HX dehydratase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41345152-4	chr19	41345038	41345238	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 2 of 16)	intron (NM_031376, intron 2 of 16)	39932.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5936137-2	chr19	5936037	5936237	+	784.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-11321.0	NM_026772	104252.0	Mm.491103	NM_026772	ENSMUSG00000045664	Cdc42ep2	1110008C05Rik|Borg1|Cep2|D19Bwg1013e	CDC42 effector protein (Rho GTPase binding) 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-66795613-4	chr9	66795535	66795735	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177583)	promoter-TSS (NM_177583)	-212.0	NM_177583	208117.0	Mm.41291	NM_177583	ENSMUSG00000032375	Aph1b	2310057K14Rik|Aph1c	aph1 homolog B, gamma secretase subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-184619195-2	chr1	184619095	184619295	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61504.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-110655920-2	chr9	110655777	110655977	+	839.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028312)	promoter-TSS (NM_028312)	-626.0	NM_028312	72654.0	Mm.249115	NM_028312	ENSMUSG00000019659	Ccdc12	2700094L05Rik|C76605	coiled-coil domain containing 12	protein-coding	-0.247076977490026	-0.2340902694902	-0.238357131542962	-0.241641002671442	0.123450839330263	-0.233126806305149	0.0843797733580839	0.376386499587468	3.71149845357853	0.116648994303099	1
Merged-chr14-40917197-2	chr14	40917097	40917297	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145928, intron 3 of 8)	intron (NM_145928, intron 3 of 8)	-24232.0	NM_177816	328381.0	Mm.235694	NM_177816	ENSMUSG00000037833	Sh2d4b	A430109M18Rik|D030001E08	SH2 domain containing 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-55733982-4	chr16	55733854	55734054	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	88184.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-56726521-8	chr19	56726462	56726662	+	878.9249880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4190.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-113471008-3	chr13	113470915	113471115	+	865.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045501, intron 3 of 6)	intron (NR_045501, intron 3 of 6)	31829.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-165617374-4	chr1	165617253	165617453	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083897, intron 1 of 5)	intron (NM_001083897, intron 1 of 5)	17188.0	NM_001001880	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-39907321-2	chr1	39907221	39907421	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252202, intron 2 of 29)	intron (NM_001252202, intron 2 of 29)	6408.0	NM_008696	26921.0	Mm.491139	NM_008696	ENSMUSG00000026074	Map4k4	9430080K19Rik|AU043147|AU045934|AW046177|HGK|Nik	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-76977818-2	chr13	76977718	76977918	+	551.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030174, intron 17 of 20)	Lx3A|LINE|L1	157650.0	NM_134071	105377.0	Mm.209730	NM_134071	ENSMUSG00000021597	Slf1	2700017A04Rik|AW545819|Ankrd32|Brctd1|Brctx|C730024G01Rik	SMC5-SMC6 complex localization factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-89216426-4	chr7	89216349	89216549	+	943.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360746, intron 5 of 14)	L1_Rod|LINE|L1	122338.0	NM_028343	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-134357162-2	chr4	134357052	134357252	+	895.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_019578, exon 11 of 11)	3' UTR (NM_019578, exon 11 of 11)	13686.0	NM_001346578	230810.0	Mm.358876	NM_001039677	ENSMUSG00000028836	Slc30a2	ZnT-2|Znt2	solute carrier family 30 (zinc transporter), member 2	protein-coding	1.45885160502374	1.06114677493268	1.02990774383702	1.97159011610623	1.12176900182784	1.06809054115976	1.61623911009881	0.807407668587386	-0.949133519128359	0.467040033987398	0.923458524683719
Merged-chr17-6492664-2	chr17	6492560	6492760	+	763.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41666.0	NR_033520	547127.0	Mm.297552	NM_001045538		Tmem181b-ps	Tmem181b	transmembrane protein 181B, pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-25584821-2	chr9	25584721	25584921	+	674.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 4 of 7)	intron (NM_026189, intron 4 of 7)	103224.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-20672842-2	chr14	20672742	20672942	+	817.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-1479.0	NM_172596	218811.0	Mm.173119	NM_172596	ENSMUSG00000039367	Sec24c	2610204K03Rik|mKIAA0079	Sec24 related gene family, member C (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-26091556-2	chr2	26091456	26091656	+	660.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026495, intron 1 of 5)	CpG	840.0	NM_001037098	67991.0	Mm.131074	NM_026495	ENSMUSG00000026932	Nacc2	0610020I02Rik|AI448087|Btbd14a|C030048H19Rik	nucleus accumbens associated 2, BEN and BTB (POZ) domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43757370-4	chr4	43757247	43757447	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040667, exon 3 of 4)	non-coding (NR_040667, exon 3 of 4)	5488.0	NR_040667	319973.0	Mm.233955	NR_040667		A630077J23Rik	-	RIKEN cDNA A630077J23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-145140118-4	chr5	145140073	145140273	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033313)	promoter-TSS (NM_001033313)	-84.0	NM_001033313	231887.0	Mm.188851	NM_001033313	ENSMUSG00000029623	Pdap1	HASPP28|PAP|PAP1	PDGFA associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-92822276-3	chr16	92822167	92822367	+	803.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111022, intron 2 of 6)	intron (NM_001111022, intron 2 of 6)	3807.0	NM_001111021	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-31262422-4	chr9	31262328	31262528	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28|LTR|ERVL	-8973.0	NM_001101597	638580.0	Mm.373655	NM_001101597		Gm7244	EG638580	predicted gene 7244	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-103436487-4	chr11	103436392	103436592	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-23828.0	NM_183034	353047.0	Mm.18556	NM_183034	ENSMUSG00000034247	Plekhm1	AP162|B2|BC038943|D330036J23Rik	pleckstrin homology domain containing, family M (with RUN domain) member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-105699941-4	chr5	105699843	105700043	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178701)	promoter-TSS (NM_178701)	-26.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	6.58841412290924	6.87660920853879	5.61105010647117	6.2006148332862	6.68962934318133	6.76426256245583	6.58081455906619	6.30661531265279	0.215965048902692	0.38552430121949	0.876154616828737
Merged-chr5-101999240-4	chr5	101999170	101999370	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 3 of 66)	intron (NM_172882, intron 3 of 66)	70651.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	5.19348258528772	5.16390277202588	5.42447029681314	4.99081041271437	6.03809410411169	6.03636566029382	5.80589632711918	6.077603297465	0.896565468170044	0.000465501851361421	0.0105260808398299
Merged-chr15-35918145-2	chr15	35918045	35918245	+	865.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177151, intron 58 of 61)	intron (NM_177151, intron 58 of 61)	20101.0	NM_053071	12864.0	Mm.548	NM_053071	ENSMUSG00000014313	Cox6c	-	cytochrome c oxidase subunit VIc	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134035254-4	chr6	134035162	134035362	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007961)	promoter-TSS (NM_007961)	-438.0	NM_001303102	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	6.55096293950022	6.05297557627029	6.72513873458554	5.79088586777889	6.40766756384905	5.38150987385784	7.3516536270393	6.67143893946116	0.311324500319413	0.508144026093828	0.943374049681311
Merged-chr8-116967364-2	chr8	116967264	116967464	+	679.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CAAAA)n|Simple_repeat|Simple_repeat	11289.0	NM_001357254	69528.0	Mm.272846	NM_027103	ENSMUSG00000031847	1700030J22Rik	-	RIKEN cDNA 1700030J22 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-131212378-2	chr2	131212278	131212478	+	970.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355593, intron 2 of 2)	intron (NM_001355593, intron 2 of 2)	2018.0	NR_110992	69596.0	Mm.2937	NM_027129	ENSMUSG00000068264	Ap5s1	0610038L13Rik|2310035K24Rik|AW060727|sigma5	adaptor-related protein 5 complex, sigma 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-18681112-4	chr2	18680990	18681190	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007552, intron 1 of 9)	CpG	4072.0	NM_007552	12151.0	Mm.289584	NM_007552	ENSMUSG00000026739	Bmi1	AW546694|Bmi-1|Pcgf4	Bmi1 polycomb ring finger oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80370812-4	chr7	80370736	80370936	+	946.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_172903, exon 2 of 24)	5' UTR (NM_172903, exon 2 of 24)	539.0	NM_172903	140481.0	Mm.269245	NM_172903	ENSMUSG00000038886	Man2a2	1700052O22Rik|4931438M07Rik|AI480988|MX|Man IIx	mannosidase 2, alpha 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-10686570-2	chr8	10686470	10686670	+	571.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER5B|DNA|hAT-Charlie	195884.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-59026002-8	chr19	59026007	59026207	+	868.0520630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114312, intron 8 of 16)	intron (NM_001114312, intron 8 of 16)	49962.0	NM_175172	71653.0	Mm.37338	NM_175172	ENSMUSG00000041362	Shtn1	4930506M07Rik|Shootin1|mKIAA1598	shootin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-126849136-4	chr6	126849053	126849253	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025358)	promoter-TSS (NM_025358)	-9.0	NM_025358	66108.0	Mm.29939	NM_025358	ENSMUSG00000000399	Ndufa9	1010001N11Rik	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56271879-2	chr17	56271779	56271979	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_174989, exon 2 of 2)	exon (NM_174989, exon 2 of 2)	4888.0	NM_174989	106759.0	Mm.203952	NM_174989	ENSMUSG00000047123	Ticam1	AW046014|AW547018|TICAM-1|TRIF	toll-like receptor adaptor molecule 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-132343831-4	chr1	132343734	132343934	+	880.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24114.0	NM_001311108	68875.0	Mm.273785	NM_178874	ENSMUSG00000042066	Tmcc2	1110063G11Rik	transmembrane and coiled-coil domains 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-143690166-2	chr7	143690066	143690266	+	588.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199227, intron 21 of 21)	intron (NM_001199227, intron 21 of 21)	-4291.0	NR_131763	79201.0	Mm.290780	NM_024290	ENSMUSG00000037613	Tnfrsf23	SOB|TNFRSFH23|Tnfrh1|Tnfrsf1al1|mDcTRAILR1|mSOB	tumor necrosis factor receptor superfamily, member 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-52397710-4	chr11	52397726	52397926	+	938.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153117, intron 1 of 2)	B3A|SINE|B2	1398.0	NM_153117	213673.0	Mm.291979	NM_153117	ENSMUSG00000036275	9530068E07Rik	C85061|Kct2	RIKEN cDNA 9530068E07 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-6551374-2	chr11	6551244	6551444	+	720.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001190343, intron 1 of 8)	ID_B1|SINE|B4	4457.0	NM_001190343	216527.0	Mm.221271	NM_146014	ENSMUSG00000000378	Ccm2	BC029157	cerebral cavernous malformation 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-97069813-2	chr7	97069713	97069913	+	775.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11938.0	NM_001162477	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-38483698-2	chr3	38483598	38483798	+	698.75	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001167883, exon 2 of 4)	5' UTR (NM_001167883, exon 2 of 4)	1118.0	NM_001167883	99696.0	Mm.290937	NM_001033198	ENSMUSG00000044864	Ankrd50	AI662170|E430012K20Rik|mKIAA1223|mKIAA3019	ankyrin repeat domain 50	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-54754128-4	chr14	54754038	54754238	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016972, intron 3 of 10)	intron (NM_016972, intron 3 of 10)	27748.0	NM_016972	50934.0	Mm.276831	NM_016972	ENSMUSG00000022180	Slc7a8	AA408822|LAT2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	protein-coding	1.76341935173092	1.98481178935343	1.79571322349002	1.74493490342924	1.0612822641247	1.72955393681161	2.13750780563123	1.29841622647672	-0.581243608169481	0.600692091043778	0.972964840983327
Merged-chr11-120783797-2	chr11	120783697	120783897	+	775.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346709)	promoter-TSS (NM_001346709)	407.0	NM_009053	19719.0	Mm.871	NM_009053	ENSMUSG00000025158	Rfng	-	RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-77327992-3	chr2	77327882	77328082	+	658.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-47390.0	NM_175465	228071.0	Mm.27120	NM_175465	ENSMUSG00000042272	Sestd1	1500031J16Rik|A930010O20|Solo/Trio8	SEC14 and spectrin domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-128143168-2	chr6	128143068	128143268	+	869.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175414, intron 1 of 8)	intron (NM_175414, intron 1 of 8)	410.0	NM_175414	109246.0	Mm.21814	NM_175414	ENSMUSG00000030352	Tspan9	6720474K14Rik|9430079M16Rik|AU018597|Tspan-9	tetraspanin 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97421877-3	chr6	97421785	97421985	+	920.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 3 of 23)	intron (NM_145148, intron 3 of 23)	37401.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140649148-4	chr5	140649045	140649245	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175274)	promoter-TSS (NM_175274)	-114.0	NM_175274	78339.0	Mm.28947	NM_175274	ENSMUSG00000036565	Ttyh3	2900029G13Rik|AI414930|TTY3|mTTY3	tweety family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128038831-2	chr10	128038731	128038931	+	723.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001282976, intron 2 of 7)	ID4_|SINE|ID	3485.0	NM_001113199	17938.0	Mm.3746	NM_013608	ENSMUSG00000061315	Naca	AL022831|AL024382|Gm1878|mKIAA0363|skNAC	nascent polypeptide-associated complex alpha polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167359882-2	chr2	167359782	167359982	+	569.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-10704.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-55838845-4	chr16	55838771	55838971	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030612)	promoter-TSS (NM_030612)	-230.0	NM_001159395	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-64235080-2	chr15	64234980	64235180	+	685.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 3 of 28)	intron (NM_001276461, intron 3 of 28)	77593.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-107522142-1	chr5	107522042	107522242	+	599.0	f0_balb.idr	Intergenic	MER57C2|LTR|ERV1	-12569.0	NM_182745	76421.0	Mm.67037	NM_175241	ENSMUSG00000089798	1700028K03Rik	-	RIKEN cDNA 1700028K03 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-121338325-4	chr6	121338234	121338434	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_144512)	TTS (NM_144512)	-4742.0	NM_001347433	14411.0	Mm.274506	NM_133661	ENSMUSG00000030109	Slc6a12	BGT1|GAT-2|GAT2|Gabt2	solute carrier family 6 (neurotransmitter transporter, betaine/GABA), member 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-155838578-1	chr4	155838478	155838678	+	644.0	f1_balb.idr	Intergenic	Intergenic	-1102.0	NM_024263	74761.0	Mm.159028	NM_024263	ENSMUSG00000029070	Mxra8	1200013A08Rik|1700095D18Rik|AI131686|Asp3|Dicam	matrix-remodelling associated 8	protein-coding	-0.340559790535663	-0.132743631320298	-0.464591640184822	-0.467107234953098	-0.0266247992462273	-0.460570491848285	-0.463870209246096	-0.313607818867337	0.475025086273993	0.84662529228176	1
Merged-chr5-145931284-1	chr5	145931184	145931384	+	558.0	f1_balb.idr	Intergenic	L1Md_F2|LINE|L1	-51430.0	NM_007818	13112.0	Mm.332844	NM_007818	ENSMUSG00000056035	Cyp3a11	AI256190|Cyp3a|IIIAm1|Pcn	cytochrome P450, family 3, subfamily a, polypeptide 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132074215-3	chr4	132074129	132074329	+	882.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001128607, intron 1 of 17)	intron (NM_001128607, intron 1 of 17)	1084.0	NM_001128607	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-22461181-4	chr16	22461077	22461277	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21607.0	NM_023794	104156.0	Mm.155708	NM_023794	ENSMUSG00000013089	Etv5	1110005E01Rik|8430401F14Rik|ERM	ets variant 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71704632-1	chr17	71704532	71704732	+	581.0	f1_c57bl6.idr	intron (NM_177087, intron 10 of 19)	intron (NM_177087, intron 10 of 19)	31371.0	NM_177087	320159.0	Mm.187372	NM_177087	ENSMUSG00000045761	Togaram2	4632412N22Rik|Fam179a	TOG array regulator of axonemal microtubules 2	protein-coding	-0.339104336801303	-0.461657472910212	0.0693448210110508	-0.314346919860811	-0.217826997637017	-0.460891508625649	-0.464298830195078	-0.467191067195903	-1.66250562298399	0.50018784431995	1
Merged-chr2-113821824-2	chr2	113821714	113821914	+	618.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_009162, intron 2 of 5)	MTB|LTR|ERVL-MaLR	7277.0	NM_009162	20394.0	Mm.4836	NM_009162	ENSMUSG00000023236	Scg5	7B2|AI325031|Sgne-1|Sgne1	secretogranin V	protein-coding	2.04413453321326	1.52560221176996	1.98037558324642	2.34106924606842	2.15378078194197	2.19466445771205	2.23410287377307	1.2350100808314	0.024693858182666	0.980437022625676	0.998431161219273
Merged-chr7-104200013-4	chr7	104199919	104200119	+	806.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9814.0	NM_147055	259057.0	Mm.223438	NM_147055	ENSMUSG00000044899	Olfr649	MOR31-7	olfactory receptor 649	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-88864035-4	chr15	88863946	88864146	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145478, intron 4 of 5)	intron (NM_145478, intron 4 of 5)	1852.0	NM_145478	223775.0	Mm.400129	NM_145478	ENSMUSG00000035828	Pim3	BC026639|Kid1	proviral integration site 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-19628222-4	chr3	19628136	19628336	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16224.0	NM_001081281	381485.0	Mm.35419	NM_001081281	ENSMUSG00000060913	Trim55	D830041C10Rik|Murf2|Rnf29	tripartite motif-containing 55	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19416869-2	chr7	19416810	19417010	+	592.0	f0_balb.idr|f1_balb.idr	TTS (NR_073014)	TTS (NR_073014)	4507.0	NR_073014	100503495.0	Mm.410762	NR_073014	ENSMUSG00000040705	A930016O22Rik	-	RIKEN cDNA A930016O22 gene	ncRNA	0.139592477771553	0.526050158000286	0.153184619359794	0.148088139193483	0.293593498830989	0.161249152349069	0.856646201809451	0.806249334613223	2.40977119626137	0.238060616357169	1
Merged-chr12-56428383-2	chr12	56428288	56428488	+	754.5	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-82494.0	NM_145442	217588.0	Mm.25656	NM_145442	ENSMUSG00000021028	Mbip	4933408E06Rik	MAP3K12 binding inhibitory protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-86078785-2	chr17	86078685	86078885	+	628.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030133, intron 14 of 20)	intron (NM_030133, intron 14 of 20)	66390.0	NM_030133	78586.0	Mm.146236	NM_030133	ENSMUSG00000024135	Srbd1	AI461933|C85414|D530025C17Rik	S1 RNA binding domain 1	protein-coding	1.10761498308677	2.00032073382512	0.607939436184901	0.593301982277215	1.11991651289429	2.01948604967484	0.612049173407809	0.595889280892077	0.0399524144806309	0.979561530172612	0.998431161219273
Merged-chr12-3809939-2	chr12	3809839	3810039	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271753, intron 1 of 22)	intron (NM_001271753, intron 1 of 22)	2779.0	NM_001271753	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-100480611-3	chr6	100480500	100480700	+	643.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-46800.0	NR_040525	73395.0	Mm.69413	NR_040525	ENSMUSG00000101553	1700049E22Rik	-	RIKEN cDNA 1700049E22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-116485918-2	chr3	116485818	116486018	+	607.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Charlie2b|DNA|hAT-Charlie	22257.0	NM_025517	66368.0	Mm.251228	NM_025517	ENSMUSG00000000339	Rtca	2310009A18Rik|AI450277|RPC|Rtcd1	RNA 3'-terminal phosphate cyclase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-179760357-2	chr1	179760257	179760457	+	558.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_026375, exon 30 of 36)	exon (NM_026375, exon 30 of 36)	43658.0	NM_026375	226747.0	Mm.128165	NM_026375	ENSMUSG00000026491	Ahctf1	6230412P20Rik|AV011447|Elys	AT hook containing transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91517527-2	chr2	91517436	91517636	+	671.333374	f0_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9226.0	NM_001165989	75786.0	Mm.168478	NM_029437	ENSMUSG00000040549	Ckap5	3110043H24Rik|4930432B04Rik|D730027C18Rik|T25636|mKIAA0097	cytoskeleton associated protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-148312557-1	chr5	148312457	148312657	+	545.0	f1_balb.idr	intron (NM_001359511, intron 6 of 6)	B3|SINE|B2	47340.0	NM_001359505	77521.0	Mm.244177	NM_029920	ENSMUSG00000029651	Mtus2	5730592G18Rik|A730013O20Rik|AU067634|C130038G02Rik|Cazip|Gm763|mKIAA0774	microtubule associated tumor suppressor candidate 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-102347555-4	chr7	102347460	102347660	+	966.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009287, intron 1 of 11)	intron (NM_009287, intron 1 of 11)	79736.0	NM_009287	20866.0	Mm.645	NM_009287	ENSMUSG00000030987	Stim1	SIM	stromal interaction molecule 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167027128-2	chr2	167027028	167027228	+	847.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153065, intron 9 of 20)	intron (NM_153065, intron 9 of 20)	11815.0	NM_153065	228889.0	Mm.295031	NM_153065	ENSMUSG00000017999	Ddx27	C86129	DEAD (Asp-Glu-Ala-Asp) box polypeptide 27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-40479919-4	chr6	40479821	40480021	+	882.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_212468, intron 6 of 6)	intron (NM_212468, intron 6 of 6)	8453.0	NM_001286663	381760.0	Mm.276356	NM_028358	ENSMUSG00000029911	Ssbp1	2810480P10Rik|G630031O20Rik|MtSSB|mtDBP	single-stranded DNA binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-103634145-2	chr9	103634045	103634245	+	577.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178638, intron 2 of 5)	B4A|SINE|B4	58662.0	NM_001359465	81907.0	Mm.384704	NM_178638	ENSMUSG00000042757	Tmem108	AI462967|B130017P16Rik|R74726	transmembrane protein 108	protein-coding	-0.71289628340833	-0.842932274600879	-0.285471983881102	-0.850221245608405	-0.853395772955658	-0.840214916695854	-0.847323841101257	-0.685035019892448	-2.02513749179932	0.47335485710658	1
Merged-chr1-106151951-4	chr1	106151853	106152053	+	894.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_040630)	TTS (NR_040630)	19571.0	NR_040630	626049.0	Mm.247410	NR_040630	ENSMUSG00000101583	Gm20753	-	predicted gene, 20753	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-77104475-2	chr18	77104375	77104575	+	817.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164170, intron 2 of 12)	intron (NM_001164170, intron 2 of 12)	38795.0	NM_001164170	17344.0	Mm.6370	NM_008602	ENSMUSG00000025423	Pias2	6330408K17Rik|AI462206|ARIP3|AU018068|Dib|Miz1|PIASxalpha|PIASxb|PIASxbeta|SIZ2	protein inhibitor of activated STAT 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-42520036-4	chr19	42519933	42520133	+	842.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177464, intron 1 of 6)	B4|SINE|B4	1228.0	NM_177464	52013.0	Mm.254169	NM_177464	ENSMUSG00000025184	R3hcc1l	1700036B12Rik|AI450607|C10orf28|D19Ertd386e|GIDRP86|Gidrp88	R3H domain and coiled-coil containing 1 like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111344383-2	chr12	111344283	111344483	+	781.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_183016, intron 2 of 36)	intron (NM_183016, intron 2 of 36)	33335.0	NM_183016	217866.0	Mm.27397	NM_183016	ENSMUSG00000021279	Cdc42bpb	MRCKb	CDC42 binding protein kinase beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-120878343-1	chr4	120878243	120878443	+	847.5	f1_c57bl6.idr	intron (NM_182929, intron 3 of 7)	intron (NM_182929, intron 3 of 7)	23544.0	NM_182929	242662.0	Mm.192502	NM_182929	ENSMUSG00000032890	Rims3	A730060M23Rik|Nim3|Rim3|mKIAA0237	regulating synaptic membrane exocytosis 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19457822-2	chr7	19457722	19457922	+	781.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172279, intron 1 of 16)	intron (NM_172279, intron 1 of 16)	672.0	NM_172279	232944.0	Mm.260504	NM_172279	ENSMUSG00000030397	Mark4	2410090P21Rik|C79806|Markl1	MAP/microtubule affinity regulating kinase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99917617-4	chr7	99917513	99917713	+	787.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001164258, exon 19 of 19)	exon (NM_001164258, exon 19 of 19)	58395.0	NM_001164258	446101.0	Mm.440757	NM_001164258	ENSMUSG00000035211	Xrra1	AI449753	X-ray radiation resistance associated 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-74713850-7	chr1	74713766	74713966	+	844.6904910000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_024264, exon 1 of 9)	exon (NM_024264, exon 1 of 9)	331.0	NM_024264	104086.0	Mm.85083	NM_024264	ENSMUSG00000026170	Cyp27a1	1300013A03Rik|Cyp27	cytochrome P450, family 27, subfamily a, polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-45943291-2	chr13	45943191	45943391	+	614.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199304, intron 2 of 6)	Lx8|LINE|L1	21700.0	NM_001199304	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-66078130-1	chr18	66078030	66078230	+	555.0	f1_c57bl6.idr	intron (NM_178793, intron 5 of 10)	intron (NM_178793, intron 5 of 10)	-75495.0	NM_001172062	70361.0	Mm.290857	NM_027400	ENSMUSG00000041891	Lman1	2610020P13Rik|AI326273|AU043785|C730041J05|ERGIC53|F5F8D|MCFD1|MR60|P58|gp58	lectin, mannose-binding, 1	protein-coding	-1.56355737717652	-1.81244775989375	-1.82128546162293	-1.82854501295842	-1.83962066705452	-1.81053259306168	-1.81928479966835	-1.82724555674025	-1.28500227969968	0.715751224811686	1
Merged-chr8-83425458-4	chr8	83425356	83425556	+	925.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009904, intron 13 of 14)	intron (NM_009904, intron 13 of 14)	17206.0	NM_001285992	56367.0	Mm.246911	NM_019708	ENSMUSG00000063253	Scoc	0610011C06Rik|2810002J11Rik|AA415030|SCOCO	short coiled-coil protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99381414-4	chr7	99381347	99381547	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001362166)	promoter-TSS (NM_001362166)	-71.0	NM_001362168	233552.0	Mm.286317	NM_201352	ENSMUSG00000035314	Gdpd5	BC024955|Gde2	glycerophosphodiester phosphodiesterase domain containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-93744165-3	chr16	93744066	93744266	+	777.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357118, intron 3 of 35)	intron (NM_001357118, intron 3 of 35)	14067.0	NM_001357118	70028.0	Mm.23230	NM_026700	ENSMUSG00000022946	Dopey2	0610038M01Rik|2610510B01Rik|AI503246|C21orf5|mKIAA0933	dopey family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-62645612-4	chr2	62645517	62645717	+	999.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027835, exon 1 of 16)	exon (NM_027835, exon 1 of 16)	638.0	NM_027835	71586.0	Mm.136224	NM_027835	ENSMUSG00000026896	Ifih1	9130009C22Rik|Helicard|Hlcd|MDA5|RLR-2	interferon induced with helicase C domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-35466895-3	chr8	35466773	35466973	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_026067, exon 7 of 7)	3' UTR (NM_026067, exon 7 of 7)	28660.0	NM_026067	67276.0	Mm.207534	NM_026067	ENSMUSG00000031527	Eri1	3'hexo|3110010F15Rik|Thex1|eri-1	exoribonuclease 1	protein-coding	3.62325552217185	4.24185838830644	3.95119255286858	2.72272062547944	4.66498392686141	5.8729667065848	5.11735263050115	5.19232624272859	1.93161409574077	1.01559969450813e-05	0.000467461578057873
Merged-chr9-88439057-4	chr9	88438960	88439160	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172926)	promoter-TSS (NM_172926)	-109.0	NM_172926	244962.0	Mm.439873	NM_172926	ENSMUSG00000032422	Snx14	B830022K16|C330035N22Rik|YR-14	sorting nexin 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-69724900-4	chr12	69724774	69724974	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145443)	promoter-TSS (NM_145443)	0.0	NM_145443	217666.0	Mm.103362	NM_145443	ENSMUSG00000020988	L2hgdh	BC016226	L-2-hydroxyglutarate dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32924016-2	chr2	32923916	32924116	+	677.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_146119, exon 14 of 14)	exon (NM_146119, exon 14 of 14)	37239.0	NM_199302	227738.0	Mm.248037	NM_199302	ENSMUSG00000026792	Lrsam1	-	leucine rich repeat and sterile alpha motif containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46507990-2	chr19	46507890	46508090	+	795.700012	f1_balb.idr|f1_c57bl6.idr	intron (NM_053100, intron 1 of 5)	intron (NM_053100, intron 1 of 5)	6342.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-119007542-4	chr14	119007417	119007617	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081252, intron 33 of 38)	ORR1D2|LTR|ERVL-MaLR	69585.0	NM_008929	100037258.0	Mm.12616	NM_008929	ENSMUSG00000022136	Dnajc3	AA408985|AU067833|Dnajc3a|Dnajc3b|Prkri|mp58|p58|p58IPK	DnaJ heat shock protein family (Hsp40) member C3	protein-coding	7.29790849854972	7.61008516668382	6.83738177077912	7.10357550963184	7.35824016277593	7.69520576986758	6.73578467236198	7.20035668848901	0.0503953128492669	0.809200572340615	0.998431161219273
Merged-chr9-114782490-2	chr9	114782425	114782625	+	573.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133978)	promoter-TSS (NM_133978)	-532.0	NM_001252479	102545.0	Mm.35600	NM_133978	ENSMUSG00000032436	Cmtm7	AI481279|Cklfsf7|LNV	CKLF-like MARVEL transmembrane domain containing 7	protein-coding	1.5729426111637	2.3443385823057	1.12392322697923	2.106167507905	1.92026173313224	1.7716253974741	1.36101436943511	1.7959287921559	-0.431826808316854	0.691227899358366	0.996797155829528
Merged-chr10-78246313-2	chr10	78246213	78246413	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER5|LTR|ERV1	-1671.0	NM_001081055	216131.0	Mm.27539	NM_001081055	ENSMUSG00000000374	Trappc10	B230307C21Rik|Gm870|Tmem1|b2b2416Clo|b2b2613Clo	trafficking protein particle complex 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-44057475-1	chr5	44057375	44057575	+	655.0	f1_c57bl6.idr	intron (NM_001163578, intron 2 of 22)	intron (NM_001163578, intron 2 of 22)	37293.0	NM_001163581	19126.0	Mm.6250	NM_008935	ENSMUSG00000029086	Prom1	4932416E19Rik|AC133|CD133|Prom|Prom-1|Proml1	prominin 1	protein-coding	-0.90856715107536	-0.125828373998887	-0.901397477057805	-0.904086526466182	-0.747864373710333	-0.890012471362281	-0.900630138308409	-0.903616214400303	-2.26152155324398	0.447902055616201	1
Merged-chr2-145773110-3	chr2	145773020	145773220	+	901.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12996.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-45149974-3	chr19	45149910	45150110	+	826.544434	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021901)	promoter-TSS (NM_021901)	-705.0	NM_021901	21908.0	Mm.391203	NM_021901	ENSMUSG00000025215	Tlx1	Hox-11|Hox11|Tlx-1	T cell leukemia, homeobox 1	protein-coding	0.497762247283621	0.359239586856514	0.55387986999812	1.53004226699941	0.50307888938251	0.586334865682782	0.351822010119834	0.835706429794763	-1.31670534782529	0.424627762487074	1
Merged-chr11-113683016-2	chr11	113682916	113683116	+	581.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_138598, intron 1 of 2)	intron (NM_138598, intron 1 of 2)	1135.0	NM_138598	28081.0	Mm.351688	NM_138598	ENSMUSG00000041629	Fam104a	D11Wsu99e	family with sequence similarity 104, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-47042754-1	chr13	47042654	47042854	+	771.0	f1_balb.idr	promoter-TSS (NM_172262)	promoter-TSS (NM_172262)	463.0	NM_016785	22017.0	Mm.10169	NM_016785	ENSMUSG00000021376	Tpmt	AW106912	thiopurine methyltransferase	protein-coding	0.7569697326128	0.827539947554347	2.21248175687936	0.787684955588059	1.45678467253356	0.832418517325991	1.85815224828271	2.2258455652766	0.974282613440698	0.499245912559843	0.937522828426114
Merged-chr5-120777707-4	chr5	120777616	120777816	+	982.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145226)	promoter-TSS (NM_145226)	-57.0	NM_145226	246727.0	Mm.204887	NM_145226	ENSMUSG00000032661	Oas3	Oasl10	2'-5' oligoadenylate synthetase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118185901-2	chr11	118185801	118186001	+	702.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001112700, intron 3 of 12)	intron (NM_001112700, intron 3 of 12)	26841.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-125990367-2	chr4	125990267	125990467	+	568.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34292.0	NR_045561	12986.0	Mm.271701	NM_007782	ENSMUSG00000028859	Csf3r	Cd114|Csfgr|G-CSF-R|G-CSFR	colony stimulating factor 3 receptor (granulocyte)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-83128200-4	chr15	83128097	83128297	+	975.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347082, intron 7 of 7)	intron (NM_001347082, intron 7 of 7)	-5396.0	NM_029101	74778.0	Mm.30056	NM_029101	ENSMUSG00000018040	Rrp7a	1110014J01Rik|AA408146|Kheg1	ribosomal RNA processing 7 homolog A (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-73352780-5	chr8	73352726	73352926	+	881.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010687, exon 1 of 15)	5' UTR (NM_010687, exon 1 of 15)	714.0	NM_001317391	16795.0	Mm.324371	NM_010687	ENSMUSG00000004383	Large1	BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd	LARGE xylosyl- and glucuronyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-29344353-2	chr19	29344253	29344453	+	656.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9683.0	NM_011272	19773.0	Mm.5033	NM_011272	ENSMUSG00000039097	Rln1	Rln|rlx	relaxin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-62558007-3	chr10	62557938	62558138	+	890.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_028197)	TTS (NM_028197)	20419.0	NM_028197	72320.0	Mm.258955	NM_028197	ENSMUSG00000036955	Kif1bp	0710007C18Rik|2510003E04Rik|KBP|mKIAA1279	KIF1 binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122269386-4	chr5	122269296	122269496	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4936.0	NM_001039153	654470.0	Mm.28804	NM_001039153	ENSMUSG00000038593	Tctn1	G730031O11Rik|Tect1	tectonic family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-11254419-4	chr16	11254318	11254518	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001130008)	promoter-TSS (NM_001130008)	27.0	NR_035466	100316833.0		NR_035466	ENSMUSG00000088544	Mir1945	mir-1945|mmu-mir-1945	microRNA 1945	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-74693248-3	chr7	74693115	74693315	+	727.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR50|LTR|ERVL	-138435.0	NM_001038643	108116.0	Mm.425467	NM_023908	ENSMUSG00000025790	Slco3a1	5830414C08Rik|Anr1|MJAM|OATP-D|R75096|Slc21a11	solute carrier organic anion transporter family, member 3a1	protein-coding	1.01129313295186	2.00551794383047	1.12815364091873	0.537634537452786	0.717951268171412	0.566795039175858	1.14018393147213	0.539651287448358	-2.18639790114865	0.156812491429197	0.613360045340919
Merged-chr15-62166043-4	chr15	62165951	62166151	+	972.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_003368, intron 4 of 8)	intron (NR_003368, intron 4 of 8)	53400.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-120035951-2	chr1	120035851	120036051	+	585.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001012322, intron 4 of 13)	(CA)n|Simple_repeat|Simple_repeat	28971.0	NM_001012322	319229.0	Mm.189223	NM_001012322	ENSMUSG00000026387	Sctr	6530402O03Rik	secretin receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-19059487-4	chr2	19059386	19059586	+	997.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	61167.0	NR_024323	74629.0	Mm.117687	NR_024323	ENSMUSG00000026736	4930426L09Rik	-	RIKEN cDNA 4930426L09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72144816-3	chr6	72144698	72144898	+	756.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001035228, intron 4 of 6)	intron (NM_001035228, intron 4 of 6)	-21601.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-104675500-3	chr3	104675383	104675583	+	940.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36819.0	NM_009196	20501.0	Mm.9086	NM_009196	ENSMUSG00000032902	Slc16a1	AL022710|Mct1	solute carrier family 16 (monocarboxylic acid transporters), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-80815609-4	chr12	80815479	80815679	+	878.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001242419, intron 1 of 6)	intron (NM_001242419, intron 1 of 6)	25047.0	NM_001242419	217684.0	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-36035809-3	chr12	36035690	36035890	+	851.194458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025359, intron 1 of 5)	intron (NM_025359, intron 1 of 5)	6688.0	NM_025359	66109.0	Mm.254663	NM_025359	ENSMUSG00000020577	Tspan13	1100001I23Rik|NET-6|Tm4sf13	tetraspanin 13	protein-coding	1.22690453057097	1.55267791351667	1.80629658667845	1.05856739429001	2.28575603728086	2.24119212865582	1.94683680871514	1.46960019611721	1.79476008083827	0.104666673467503	0.504603836698275
Merged-chr11-70507199-2	chr11	70507099	70507299	+	624.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_029360, intron 1 of 4)	B1_Mm|SINE|Alu	1925.0	NM_029360	75604.0	Mm.24400	NM_029360	ENSMUSG00000018919	Tm4sf5	2010003F10Rik|AI323987	transmembrane 4 superfamily member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95904731-2	chr3	95904631	95904831	+	662.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011797)	promoter-TSS (NM_011797)	-46.0	NM_001355750	23831.0	Mm.489647	NM_011797	ENSMUSG00000038526	Car14	AW536446|CA-XIV|Ca14	carbonic anhydrase 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-67845906-3	chr9	67845863	67846063	+	857.4722289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177184, intron 1 of 84)	intron (NM_177184, intron 1 of 84)	5567.0	NM_177184	320528.0	Mm.241454	NM_177184	ENSMUSG00000035284	Vps13c	AI552542|AV026040|C230055H22Rik|W51662|chorein	vacuolar protein sorting 13C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118978320-2	chr11	118978220	118978420	+	662.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9861.0	NM_001359574	238011.0	Mm.244114	NM_001030291	ENSMUSG00000046697	Enpp7	Alk-SMase|Gm254	ectonucleotide pyrophosphatase/phosphodiesterase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-109045726-4	chr3	109045608	109045808	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18101.0	NM_001163567	329739.0	Mm.69013	NM_001163567	ENSMUSG00000040339	Fam102b	1600010D10Rik|B430201A12Rik	family with sequence similarity 102, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-45548431-2	chr17	45548331	45548531	+	839.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013749, intron 1 of 2)	intron (NM_001013749, intron 1 of 2)	1246.0	NM_001013749	210573.0	Mm.329064	NM_001013749	ENSMUSG00000096847	Tmem151b	Gm323	transmembrane protein 151B	protein-coding	-1.27480050717774	-0.604729833679879	-1.25573295904267	-1.26493563944758	-1.27428069156472	-1.24210192204986	-1.25319678955844	-1.26328836405502	-2.6632876257018	0.439827081912762	1
Merged-chr1-191242290-3	chr1	191242186	191242386	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17832.0	NR_151547	100504360.0	Mm.16927	NM_001033188		D730003I15Rik	AU020850	RIKEN cDNA D730003I15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-99242143-2	chr5	99242043	99242243	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_181318, intron 2 of 13)	intron (NM_181318, intron 2 of 13)	10784.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-58217774-4	chr13	58217666	58217866	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-2113.0	NM_026842	56085.0	Mm.182053	NM_026842	ENSMUSG00000005312	Ubqln1	1110046H03Rik|1810030E05Rik|AU019746|C77538|D13Ertd372e|Da41|Dsk2|Plic-1|Plic1|Xdrp1	ubiquilin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118648621-2	chr9	118648521	118648721	+	832.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 4 of 27)	intron (NM_133721, intron 4 of 27)	41912.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26512975-1	chr17	26512875	26513075	+	691.0	f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-4503.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	1.47436394212901	1.17922851974281	2.02418414656812	2.17331963771527	2.16126128041725	1.18470299775315	2.0407034168392	2.43749424577298	0.687082909988356	0.533211382527746	0.952082138848632
Merged-chr16-4690789-2	chr16	4690689	4690889	+	548.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001135112, intron 3 of 10)	B2_Mm2|SINE|B2	6719.0	NM_001135112	83945.0	Mm.248337	NM_023646	ENSMUSG00000004069	Dnaja3	1200003J13Rik|1810053A11Rik|C81173|Tid-1|Tid1l	DnaJ heat shock protein family (Hsp40) member A3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-84054287-2	chr12	84054187	84054387	+	581.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134246, intron 2 of 3)	intron (NM_134246, intron 2 of 3)	2136.0	NM_134246	171281.0	Mm.202331	NM_134246	ENSMUSG00000021228	Acot3	AW108394|PTE-Ia|Pte2a	acyl-CoA thioesterase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-3425108-3	chr2	3425010	3425210	+	905.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302684, intron 1 of 14)	intron (NM_001302684, intron 1 of 14)	979.0	NM_001302684	227525.0	Mm.23483	NM_146114	ENSMUSG00000026648	Dclre1c	9930121L06Rik|AI661365|Art|Snm1l	DNA cross-link repair 1C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-39846819-2	chr1	39846719	39846919	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_040465, intron 1 of 4)	intron (NR_040465, intron 1 of 4)	511.0	NR_040465	73426.0	Mm.396239	NR_040465	ENSMUSG00000101634	1700066B17Rik	-	RIKEN cDNA 1700066B17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-38655392-4	chr15	38655309	38655509	+	841.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6495.0	NM_025494	66335.0	Mm.276618	NM_025494	ENSMUSG00000022295	Atp6v1c1	1700025B18Rik|U13839	ATPase, H+ transporting, lysosomal V1 subunit C1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-90656852-2	chr6	90656752	90656952	+	676.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	37606.0	NM_001037493	71699.0	Mm.272633	NM_027868	ENSMUSG00000030089	Slc41a3	1010001P06Rik|AI480742|SLC41A1-L2	solute carrier family 41, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-5180338-3	chr5	5180236	5180436	+	905.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011074, intron 5 of 14)	intron (NM_011074, intron 5 of 14)	85732.0	NM_001310448	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	0.679012306840555	0.306766148442743	0.299269066694458	1.04197287128785	0.28520178095107	0.956794588092807	0.300925952754194	0.617880558735771	-0.28498716376677	0.880114042198812	1
Merged-chr16-31366538-3	chr16	31366382	31366582	+	878.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41192.0	NR_155301	102636590.0	Mm.45825	NR_155301		AV205837	-	expressed sequence AV205837	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-144252341-4	chr5	144252233	144252433	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163709, intron 1 of 2)	intron (NM_001163709, intron 1 of 2)	-2892.0	NM_018772	55950.0	Mm.38011	NM_018772	ENSMUSG00000047843	Bri3	I3	brain protein I3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-116652254-1	chr3	116652154	116652354	+	568.0	f1_c57bl6.idr	intron (NM_008246, intron 1 of 11)	Tigger5b|DNA|TcMar-Tigger	10423.0	NM_008246	15247.0	Mm.280077	NM_008246	ENSMUSG00000089911	Mfsd14a	Hiat1	major facilitator superfamily domain containing 14A	protein-coding	0.389348824584585	0.421273640345707	0.410976940157993	1.53940424056216	0.840267322769889	0.423574402503517	1.07551812308242	0.763753631748682	-0.125955708758175	0.943179966215013	0.998431161219273
Merged-chr7-100464906-2	chr7	100464806	100465006	+	732.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001017985, intron 32 of 32)	intron (NM_001017985, intron 32 of 32)	-8085.0	NM_009464	22229.0	Mm.6254	NM_009464	ENSMUSG00000032942	Ucp3	AI645527|Slc25a9|UCP-3	uncoupling protein 3 (mitochondrial, proton carrier)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-88719031-3	chr4	88718926	88719126	+	862.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172871, exon 1 of 1)	3' UTR (NM_172871, exon 1 of 1)	3482.0	NM_172871	242521.0	Mm.260601	NM_172871	ENSMUSG00000070923	Klhl9	8030469P05|C530050O22Rik|mKIAA1354	kelch-like 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-145118601-4	chr3	145118552	145118752	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025714)	promoter-TSS (NM_025714)	52.0	NM_025714	52184.0	Mm.259105	NM_025714	ENSMUSG00000028256	Odf2l	4733401D09Rik|9630045K08Rik|D3Ertd250e	outer dense fiber of sperm tails 2-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-29650810-4	chr13	29650778	29650978	+	783.608337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131896, intron 8 of 16)	L1MEc|LINE|L1	204795.0	NR_131896	68916.0	Mm.212227	NM_144536	ENSMUSG00000006191	Cdkal1	1190005B03Rik|6620401C13Rik	CDK5 regulatory subunit associated protein 1-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-120564671-4	chr2	120564562	120564762	+	920.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011743)	promoter-TSS (NM_011743)	-803.0	NM_011743	20402.0	Mm.485295	NM_011743	ENSMUSG00000027288	Zfp106	Cd-1|D2Dcr28|EyeLinc12|H3a|Sh3bp3|Znf106|sirm|zfp-106	zinc finger protein 106	protein-coding	0.234554815254843	0.0851752637367271	0.861005391103284	1.23076718844558	0.0600004210728599	0.087111526645421	0.0784295981683604	0.0709164925224648	-4.38784714076851	0.0303414048538245	1
Merged-chr16-4634449-2	chr16	4634349	4634549	+	822.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030205, intron 13 of 27)	intron (NM_030205, intron 13 of 27)	-5496.0	NM_139307	246154.0	Mm.482140	NM_139307	ENSMUSG00000039646	Vasn	2610528G05Rik|Atia|Slitl2	vasorin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-21633979-4	chr3	21633876	21634076	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-442676.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-38427219-4	chr18	38427144	38427344	+	857.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355749, intron 1 of 7)	intron (NM_001355749, intron 1 of 7)	8337.0	NM_001355749	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-181017487-4	chr1	181017394	181017594	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001312918)	promoter-TSS (NM_001312918)	75.0	NM_001312918	13849.0	Mm.9075	NM_010145	ENSMUSG00000038776	Ephx1	EH|Eph-1|Eph1|Epxh1|mEH	epoxide hydrolase 1, microsomal	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5404232-2	chr17	5404132	5404332	+	656.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	14535.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-46882197-3	chr7	46882100	46882300	+	845.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20937.0	NM_013580	16833.0	Mm.16563	NM_013580	ENSMUSG00000030851	Ldhc	LDH-C4|Ldh-3|Ldh-x|Ldh3|Ldhc4	lactate dehydrogenase C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-39768061-3	chr1	39767954	39768154	+	624.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER4A|LTR|ERVK	37278.0	NM_001177348	100042065.0	Mm.209678	NM_001177348	ENSMUSG00000091937	Gm3646	-	predicted gene 3646	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-39762552-2	chr1	39762452	39762652	+	599.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41563.0	NM_001145660	619289.0	Mm.334107	NM_001145660	ENSMUSG00000057173	Rfx8	4933400N17Rik	regulatory factor X 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126764939-2	chr7	126764839	126765039	+	720.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011952, intron 8 of 8)	intron (NM_011952, intron 8 of 8)	-1475.0	NM_024228	68616.0	Mm.246881	NM_024228	ENSMUSG00000030703	Gdpd3	1110015E22Rik	glycerophosphodiester phosphodiesterase domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-56160601-2	chr9	56160501	56160701	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019793, intron 1 of 6)	CpG	469.0	NM_019793	56434.0	Mm.28484	NM_019793	ENSMUSG00000032324	Tspan3	1700055K04Rik|TM4-A|Tm4sf8	tetraspanin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-10968039-4	chr4	10967919	10968119	+	961.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39600.0	NM_175175	71801.0	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-72184649-1	chr5	72184549	72184749	+	969.3333130000001	f0_balb.idr	Intergenic	Intergenic	-16460.0	NM_001356614	27784.0	Mm.44223	NM_178599	ENSMUSG00000029213	Commd8	C77770|D5Buc26e	COMM domain containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-77515204-4	chr1	77515108	77515308	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007936)	promoter-TSS (NM_007936)	-120.0	NM_007936	13838.0	Mm.400747	NM_007936	ENSMUSG00000026235	Epha4	2900005C20Rik|AI385584|Cek8|Hek8|Sek|Sek1|Tyro1|rb	Eph receptor A4	protein-coding	1.30093340991455	0.804611585884551	1.6335444204846	1.3786018227179	1.20306077085022	1.49325552944197	0.997976568600015	0.784076632482995	-0.6854065168901	0.61731361554759	0.977517868708383
Merged-chr13-60746061-2	chr13	60745961	60746161	+	804.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 19 of 26)	RSINE1|SINE|B4	40303.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-32131139-1	chr5	32131039	32131239	+	1000.0	f1_c57bl6.idr	Intergenic	Intergenic	-5333.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-66080443-2	chr9	66080343	66080543	+	560.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6A|LTR|ERVK	-10712.0	NM_001025612	382083.0	Mm.477103	NM_001025612	ENSMUSG00000039452	Snx22	Gm1120	sorting nexin 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-34055223-2	chr11	34055123	34055323	+	845.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_010696, intron 3 of 20)	RMER17B|LTR|ERVK	8295.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-110135729-4	chr5	110135624	110135824	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289580)	promoter-TSS (NM_001289580)	-106.0	NM_172717	231600.0	Mm.30264	NM_172717	ENSMUSG00000014668	Chfr	5730484M20Rik|C230082M18|RNF116	checkpoint with forkhead and ring finger domains	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-38861084-3	chr6	38861005	38861205	+	906.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010433, intron 1 of 14)	B4A|SINE|B4	15085.0	NM_010433	15258.0	Mm.23790	NM_010433	ENSMUSG00000061436	Hipk2	1110014O20Rik|B230339E18Rik|Stank	homeodomain interacting protein kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-72958308-2	chr9	72958208	72958408	+	665.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026314)	promoter-TSS (NM_026314)	-477.0	NM_026314	67685.0	Mm.31817	NM_026314	ENSMUSG00000092192	Dyx1c1	1700010I24Rik|Dnaaf4|EKN1|b2b811.1Clo|b2b811Clo	dyslexia susceptibility 1 candidate 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-122957593-3	chr9	122957478	122957678	+	893.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010620, intron 1 of 34)	MLTR14|LTR|ERV1	6497.0	NM_010620	209737.0	Mm.278920	NM_010620	ENSMUSG00000036768	Kif15	3110023M17Rik|3930402I10Rik|D330038N01|HKLP2|Knsl7|b2b1117.1Clo|b2b1117.1aClo	kinesin family member 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-116476027-3	chr7	116475953	116476153	+	900.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28316.0	NM_001130479	53322.0	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-135522157-3	chr7	135522054	135522254	+	883.9332890000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178669, intron 1 of 2)	intron (NM_178669, intron 1 of 2)	6500.0	NM_178669	212070.0	Mm.39721	NM_178669	ENSMUSG00000050866	Clrn3	AI649392|Tmem12	clarin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-83144406-2	chr8	83144298	83144498	+	1000.0	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-20954.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	2.91779194016741	4.30129259271608	1.86188710818237	3.89074034227702	5.67436165803889	5.68734122386596	4.78077378128553	5.9956087490744	2.55633565826663	0.00270021982634152	0.042110793946853
Merged-chr17-76297812-2	chr17	76297712	76297912	+	698.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1VL4|LINE|L1	436789.0	NR_033456	100043885.0	Mm.127562	NR_033456		Gm4710	-	predicted gene 4710	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-23437575-2	chr13	23437475	23437675	+	901.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6558.0	NR_015492	320842.0	Mm.487476	NR_015492	ENSMUSG00000085024	C230035I16Rik	-	RIKEN cDNA C230035I16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-31771396-4	chr2	31771298	31771498	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001283045, intron 1 of 10)	intron (NM_001283045, intron 1 of 10)	11225.0	NM_001283045	11350.0	Mm.1318	NM_009594	ENSMUSG00000026842	Abl1	AI325092|Abl|E430008G22Rik|c-Abl	c-abl oncogene 1, non-receptor tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118504035-2	chr11	118503935	118504135	+	801.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001024931, intron 6 of 14)	intron (NM_001024931, intron 6 of 14)	27203.0	NM_001359368	217364.0	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-94505800-2	chr9	94505700	94505900	+	613.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32281.0	NM_001033145	68861.0	Mm.258746	NM_001033145	ENSMUSG00000045414	1190002N15Rik	GoPro49|HASF	RIKEN cDNA 1190002N15 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44359049-3	chr7	44358958	44359158	+	811.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_027049)	TTS (NM_027049)	15972.0	NM_027049	69349.0	Mm.358922	NM_027049	ENSMUSG00000008028	1700008O03Rik	-	RIKEN cDNA 1700008O03 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95657326-4	chr3	95657218	95657418	+	831.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-1403.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-30301039-3	chr6	30300934	30301134	+	970.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009459, intron 1 of 6)	intron (NM_009459, intron 1 of 6)	3505.0	NM_009459	22214.0	Mm.332967	NM_009459	ENSMUSG00000039159	Ube2h	1500009C23Rik|AI181839|AI326965|AI462483|AW227540|E2-20K|Gid3|N28148|Ubc8	ubiquitin-conjugating enzyme E2H	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98948541-4	chr11	98948438	98948638	+	974.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177302, intron 2 of 9)	L1MB8|LINE|L1	8827.0	NM_001177303	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-38387741-2	chr15	38387641	38387841	+	918.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-87030.0	NM_001289471	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101028736-4	chr7	101028636	101028836	+	966.3916630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16683.0	NM_001302346	18442.0	Mm.3000	NM_008773	ENSMUSG00000032860	P2ry2	P2U1|P2Y2	purinergic receptor P2Y, G-protein coupled 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56261856-2	chr17	56261783	56261983	+	570.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010192, exon 1 of 1)	3' UTR (NM_010192, exon 1 of 1)	5090.0	NM_010192	14154.0	Mm.290813	NM_010192	ENSMUSG00000043683	Fem1a	AW611390|Fem1aa	feminization 1 homolog a (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-69210239-1	chr8	69210139	69210339	+	620.0	f1_c57bl6.idr	intron (NM_001013379, intron 1 of 3)	intron (NM_001013379, intron 1 of 3)	1193.0	NM_001013379	234358.0	Mm.334577	NM_001013379	ENSMUSG00000059897	Zfp930	-	zinc finger protein 930	protein-coding	0.726879941131647	0.777113149683928	1.95897140677197	1.52931248531629	1.34201293226163	0.780669514388165	1.70695093648483	0.96463274016566	-0.396487802875874	0.784172921214417	0.998431161219273
Merged-chr4-134469071-4	chr4	134468962	134469162	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019641, intron 1 of 4)	CpG	742.0	NM_019641	16765.0	Mm.378957	NM_019641	ENSMUSG00000028832	Stmn1	19k|Lag|Lap18|Op18|P18|P19|Pig|Pp17|Pp18|Pp19|Pr22|Smn	stathmin 1	protein-coding	-2.18292257394068	-2.15545247547656	-2.03304972317742	-2.17058342868585	-2.18099422382073	-2.1536522739386	-2.16187909550322	-2.16936197735154	-0.683654500252594	0.846597994014493	1
Merged-chr7-35171198-2	chr7	35171098	35171298	+	772.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-15187.0	NM_017394	53896.0	Mm.35567	NM_017394	ENSMUSG00000030495	Slc7a10	AL024237|Asc-1|D7Bwg0847e	solute carrier family 7 (cationic amino acid transporter, y+ system), member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-173878011-3	chr1	173877855	173878055	+	779.849976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170853, intron 2 of 9)	Lx8b|LINE|L1	2232.0	NM_001170853	100040462.0	Mm.463437	NM_001170853	ENSMUSG00000090272	Mndal	Gm2785|Ifi212	myeloid nuclear differentiation antigen like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-102203214-1	chr15	102203114	102203314	+	1000.0	f0_c57.idr	promoter-TSS (NM_001289694)	promoter-TSS (NM_001289694)	-431.0	NM_001289694	68744.0	Mm.352945	NM_153194	ENSMUSG00000046897	Zfp740	1110034O07Rik|AW548228|Znf740	zinc finger protein 740	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-148554275-2	chr5	148554148	148554348	+	866.666626	f0_c57.idr|f1_balb.idr	Intergenic	Intergenic	-1460.0	NM_001359199	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	3.15115277761124	2.01809746175718	1.95327694636987	3.13919526507609	2.37058193665701	2.38613274863063	2.44580399650341	2.59842330963883	-0.530815315551264	0.508628095469738	0.943622639080647
Merged-chr11-54563011-4	chr11	54562921	54563121	+	944.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252494, intron 5 of 28)	ID_B1|SINE|B4	-33125.0	NM_001252498	192786.0	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-78732842-4	chr14	78732755	78732955	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081336)	promoter-TSS (NM_001081336)	-126.0	NM_001081336	380921.0	Mm.89591	NM_001081336	ENSMUSG00000034731	Dgkh	5930402B05Rik|D130015C16|DGK	diacylglycerol kinase, eta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-57768447-2	chr6	57768347	57768547	+	981.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_146168, intron 3 of 4)	intron (NM_146168, intron 3 of 4)	56678.0	NM_146168	232023.0	Mm.24642	NM_146168	ENSMUSG00000037788	Vopp1	AW146242|Ecop	vesicular, overexpressed in cancer, prosurvival protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-57440167-2	chr17	57440067	57440267	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355722, intron 12 of 22)	Lx5c|LINE|L1	81481.0	NM_010130	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-104817001-4	chr2	104816905	104817105	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001123327)	promoter-TSS (NM_001123327)	-309.0	NM_001123327	99003.0	Mm.274314	NM_001123327	ENSMUSG00000074994	Qser1	4732486I23Rik|AI502974	glutamine and serine rich 1	protein-coding	3.93298743893839	3.9449826217884	4.39653363664455	4.02660002386823	3.54143814985245	4.65731827451814	4.16882183489715	1.75511150738158	-0.280723079514152	0.646025619079902	0.984116759910594
Merged-chr1-86046678-2	chr1	86046578	86046778	+	731.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001144993, intron 1 of 2)	intron (NM_001144993, intron 1 of 2)	815.0	NM_001144992	72792.0	Mm.54981	NM_001144992	ENSMUSG00000026227	2810459M11Rik	-	RIKEN cDNA 2810459M11 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-47646860-2	chr6	47646760	47646960	+	792.583374	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER12B|LTR|ERVK	8234.0	NR_002841	19799.0		NR_002841		Rn4.5s	-	4.5S RNA	rRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132885178-2	chr4	132885078	132885278	+	885.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133887)	promoter-TSS (NM_133887)	-720.0	NM_133887	100226.0	Mm.28237	NM_133887	ENSMUSG00000028879	Stx12	AI850350|AU041521|Stx13	syntaxin 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-30135311-3	chr5	30135208	30135408	+	956.694458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178878, intron 7 of 19)	MTC|LTR|ERVL-MaLR	19672.0	NM_178878	97212.0	Mm.200497	NM_178878	ENSMUSG00000025745	Hadha	C77020|Mtpa	hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase (trifunctional protein), alpha subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-150157938-2	chr5	150157854	150158054	+	715.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-101976.0	NM_172887	320365.0	Mm.216590	NM_172887	ENSMUSG00000056602	Fry	13CDNA73|9330186A19Rik|AF346502|AI462658|C87180|D930046M03|cg003|mKIAA4143	FRY microtubule binding protein	protein-coding	1.75451514979484	1.70659137000296	1.30034907763406	1.27074410491578	2.04389664621522	2.21594492136422	2.03644012720389	1.05738215835653	1.16634944324234	0.300090139068585	0.801531943131095
Merged-chr9-108626615-3	chr9	108626515	108626715	+	885.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151664, intron 3 of 15)	intron (NR_151664, intron 3 of 15)	22793.0	NM_011790	23807.0	Mm.290447	NM_011790	ENSMUSG00000064145	Arih2	AI843547|ARI2|TRIAD1|UIP48	ariadne RBR E3 ubiquitin protein ligase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-12316498-2	chr17	12316398	12316598	+	553.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357722, intron 1 of 25)	Charlie15b|DNA|hAT-Charlie	2162.0	NM_011948	26407.0	Mm.28587	NM_011948	ENSMUSG00000014426	Map3k4	D17Rp17|D17Rp17e|MAPKKK4|MEKK 4|MTK1|Mek4b|Mekk4|RP17|Rp17a|Tas|mKIAA0213	mitogen-activated protein kinase kinase kinase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100483665-2	chr7	100483565	100483765	+	735.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_009464, intron 6 of 6)	intron (NM_009464, intron 6 of 6)	-9693.0	NM_011671	22228.0	Mm.171378	NM_011671	ENSMUSG00000033685	Ucp2	Slc25a8|UCP 2|UCPH	uncoupling protein 2 (mitochondrial, proton carrier)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-55213508-2	chr13	55213408	55213608	+	596.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_008739, exon 2 of 23)	exon (NM_008739, exon 2 of 23)	3726.0	NM_008739	18193.0	Mm.168965	NM_008739	ENSMUSG00000021488	Nsd1	AI528500|KMT3B	nuclear receptor-binding SET-domain protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-97364409-2	chr5	97364326	97364526	+	781.099976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27904.0	NM_001033191	97243.0	Mm.11746	NM_001033191	ENSMUSG00000046000	Naa11	Ard1b|Ard2|C80008	N(alpha)-acetyltransferase 11, NatA catalytic subunit	protein-coding	0.353851143953806	0.573090661179858	0.832389371893748	1.00405583468745	0.355262145164494	0.578355891287381	0.370635877658064	1.01203243905969	-0.580687242863848	0.743466049185549	1
Merged-chr15-38245594-2	chr15	38245494	38245694	+	780.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26391.0	NM_008757	18285.0	Mm.252830	NM_008757	ENSMUSG00000061923	Odf1	-	outer dense fiber of sperm tails 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-8321780-2	chr12	8321680	8321880	+	541.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021429, intron 3 of 6)	intron (NM_021429, intron 3 of 6)	8347.0	NM_021429	58240.0	Mm.309954	NM_021429	ENSMUSG00000020605	Hs1bp3	-	HCLS1 binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-25377606-1	chr14	25377506	25377706	+	906.0	f0_balb.idr	Intergenic	Intergenic	-81579.0	NM_001310666	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-23014319-2	chr2	23014219	23014419	+	553.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077190, intron 1 of 10)	RLTR6-int|LTR|ERV1	25922.0	NM_001077192	11308.0	Mm.205647	NM_007380	ENSMUSG00000058835	Abi1	E3B1|NAP1|Ssh3bp1|abi-1	abl-interactor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-60861441-4	chr19	60861341	60861541	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001362384)	promoter-TSS (NM_001362384)	-13.0	NM_053198	94281.0	Mm.48179	NM_053198	ENSMUSG00000063698	Sfxn4	-	sideroflexin 4	protein-coding	3.28608842352737	4.70715721530909	3.81707155617203	3.91049523270824	3.91481874793642	4.46501028869659	3.77093032698317	2.66442223773195	-0.249898103866856	0.652471837278415	0.986434615290108
Merged-chr8-40610446-4	chr8	40610322	40610522	+	989.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040699, intron 1 of 13)	B3A|SINE|B2	24370.0	NM_001040699	54384.0	Mm.294871	NM_019433	ENSMUSG00000039431	Mtmr7	-	myotubularin related protein 7	protein-coding	3.93207238623548	5.10314945807339	4.36628047818617	4.30195153670638	3.48906712175367	4.30242457289484	3.51514063182265	4.95388506886191	-0.36111839621642	0.457496394501771	0.919462395309797
Merged-chr19-40693511-4	chr19	40693431	40693631	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009848, intron 1 of 9)	intron (NM_009848, intron 1 of 9)	33761.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	4.0538547251264	3.01972919837559	4.31793762113168	2.36626096745884	3.41724988587426	3.7478517210911	2.93589462772408	3.17504416326838	-0.476617341266555	0.451681385309091	0.918146120638574
Merged-chr2-153649678-4	chr2	153649659	153649859	+	967.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271744, intron 1 of 22)	CpG	310.0	NM_001271747	13436.0	Mm.89772	NM_010068	ENSMUSG00000027478	Dnmt3b	MmuIIIB	DNA methyltransferase 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120041431-1	chr11	120041331	120041531	+	1000.0	f1_balb.idr	intron (NM_001198785, intron 1 of 13)	intron (NM_001198785, intron 1 of 13)	350.0	NM_001198787	11302.0	Mm.6826	NM_007377	ENSMUSG00000025375	Aatk	AATYK|aatyk1|mKIAA0641	apoptosis-associated tyrosine kinase	protein-coding	2.44150483872031	2.27094538246688	2.64017899724213	2.00047961844637	2.27705125667293	2.28685558418881	2.66022405496474	2.00983094027337	-0.0733039884290623	0.928755705119114	0.998431161219273
Merged-chr6-125041239-4	chr6	125041155	125041355	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133345, intron 1 of 7)	intron (NM_133345, intron 1 of 7)	1407.0	NM_133345	28019.0	Mm.262547	NM_133345	ENSMUSG00000030330	Ing4	D6Wsu147e|D6Xrf92|p29ING4	inhibitor of growth family, member 4	protein-coding	4.98105399747432	3.90187242959166	4.83115247248537	4.38981731680235	5.14646529532181	4.57889644240473	4.90509287742691	4.64702979889603	0.30158427316108	0.424961839473066	0.901293602726532
Merged-chr4-98366590-2	chr4	98366490	98366690	+	567.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_053157, intron 4 of 6)	B1_Mus1|SINE|Alu	16675.0	NM_053157	94043.0	Mm.331719	NM_053157	ENSMUSG00000028563	Tm2d1	2310026L18Rik|AA990549|Bbp	TM2 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-87906492-1	chr10	87906392	87906592	+	608.0	f0_balb.idr	intron (NM_001111274, intron 2 of 4)	intron (NM_001111274, intron 2 of 4)	45381.0	NM_001111276	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-29253141-2	chr2	29253041	29253241	+	713.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029460)	promoter-TSS (NR_029460)	-148.0	NR_029460	76220.0	Mm.330108	NR_029460	ENSMUSG00000079499	6530402F18Rik	mKIAA1857	RIKEN cDNA 6530402F18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-62731852-4	chr11	62731751	62731951	+	932.2333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2758.0	NM_133208	170740.0	Mm.339982	NM_133208	ENSMUSG00000005267	Zfp287	B230333C16Rik|SKAT-2|Skat2|Znf287|mszf16|mszf74	zinc finger protein 287	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70659119-1	chr14	70659019	70659219	+	653.0	f1_c57bl6.idr	Intergenic	Intergenic	-6035.0	NM_181345	328440.0	Mm.347749	NM_181345	ENSMUSG00000047911	Npm2	-	nucleophosmin/nucleoplasmin 2	protein-coding	-0.168569011090491	0.0254318728177247	0.145802689008878	-0.163249888461358	-0.167779922880307	0.184328812373352	-0.159106320468197	0.343573328450205	0.966852736882564	0.668645684018578	1
Merged-chr1-131882975-2	chr1	131882875	131883075	+	574.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	15698.0	NM_144875	226422.0	Mm.34027	NM_144875	ENSMUSG00000026433	Rab29	Rab7l1	RAB29, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80935534-4	chr10	80935464	80935664	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5473.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128140664-2	chr10	128140564	128140764	+	876.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039080, intron 6 of 13)	B1_Mus2|SINE|Alu	35904.0	NM_019711	56516.0	Mm.42247	NM_019711	ENSMUSG00000040043	Rbms2	2610315E04Rik|Scr3	RNA binding motif, single stranded interacting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-82910605-4	chr18	82910511	82910711	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183033)	promoter-TSS (NM_183033)	-268.0	NM_183033	329003.0	Mm.326526	NM_183033	ENSMUSG00000058881	Zfp516	C330029B10Rik|D230016L03|Zfp26l|Znf516|mKIAA0222	zinc finger protein 516	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-25270884-2	chr17	25270784	25270984	+	642.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011665, intron 1 of 6)	PB1D7|SINE|Alu	2547.0	NM_001177610	22196.0	Mm.240044	NM_011665	ENSMUSG00000015120	Ube2i	5830467E05Rik|UBC9|Ubce2i|Ubce9	ubiquitin-conjugating enzyme E2I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25626115-2	chr7	25626015	25626215	+	877.6666869999999	f1_balb.idr|f1_c57bl6.idr	TTS (NM_025504)	TTS (NM_025504)	-1509.0	NM_001036740	232984.0	Mm.192369	NM_146184	ENSMUSG00000059479	B3gnt8	B3galt7|B7galt7|BC025206	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-121839374-2	chr5	121839274	121839474	+	947.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-2515.0	NM_008507	16923.0	Mm.65493	NM_008507	ENSMUSG00000042594	Sh2b3	AI429800|Lnk	SH2B adaptor protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127325301-2	chr10	127325205	127325405	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359657)	promoter-TSS (NM_001359657)	-337.0	NM_001359657	216445.0	Mm.227198	NM_146011	ENSMUSG00000040345	Arhgap9	AU043488	Rho GTPase activating protein 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-27488089-4	chr7	27488003	27488203	+	879.662476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018820, intron 1 of 1)	intron (NM_018820, intron 1 of 1)	1150.0	NM_018820	55942.0	Mm.153684	NM_018820	ENSMUSG00000008384	Sertad1	1110032C13Rik|AV000455|AW456625|Sei-1|Sei1|TRIP-Br1	SERTA domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-48931943-1	chr13	48931843	48932043	+	900.0	f0_balb.idr	intron (NM_001033268, intron 5 of 17)	intron (NM_001033268, intron 5 of 17)	35885.0	NM_001033268	218236.0	Mm.426571	NM_001033268	ENSMUSG00000038014	Fam120a	C9orf10|Ossa	family with sequence similarity 120, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-127868802-4	chr1	127868707	127868907	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178690)	promoter-TSS (NM_178690)	34.0	NM_178690	226407.0	Mm.489713	NM_178690	ENSMUSG00000036104	Rab3gap1	1700003B17Rik|4732493F09Rik|AL117896|Rab3gap|p130	RAB3 GTPase activating protein subunit 1	protein-coding	3.38835074355549	3.33807144010339	2.69465998450204	4.00474770348707	3.89293000107995	4.09864482349828	3.24846922323169	4.07511778842444	0.628698691707632	0.248944761096444	0.747698903845194
Merged-chr9-21259085-1	chr9	21258985	21259185	+	776.0	f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-6200.0	NM_153583	235040.0	Mm.440165	NM_153583	ENSMUSG00000002820	Atg4d	9830134P12Rik|APG4-D|Apg4d|Atg4dl|Autl4	autophagy related 4D, cysteine peptidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-108692891-2	chr5	108692791	108692991	+	559.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1338.0	NM_001164259	116701.0	Mm.35691	NM_054071	ENSMUSG00000008090	Fgfrl1	FGFR5|FGFR5beta|FGFR5gamma	fibroblast growth factor receptor-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-6425522-1	chr15	6425422	6425622	+	747.0	f0_balb.idr	intron (NM_001008702, intron 9 of 13)	intron (NM_001008702, intron 9 of 13)	-19811.0	NM_013485	12279.0	Mm.29095	NM_013485	ENSMUSG00000022149	C9	-	complement component 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5600738-2	chr17	5600638	5600838	+	803.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	108138.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-33910158-4	chr17	33910062	33910262	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045146)	promoter-TSS (NR_045146)	561.0	NM_001199733	13163.0	Mm.271809	NM_007829	ENSMUSG00000002307	Daxx	-	Fas death domain-associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-157629964-3	chr3	157629870	157630070	+	787.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011196, intron 2 of 2)	MLT1J|LTR|ERVL-MaLR	63078.0	NM_011196	19218.0	Mm.30424	NM_011196	ENSMUSG00000040016	Ptger3	EP3|Pgerep3|Ptgerep3	prostaglandin E receptor 3 (subtype EP3)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127207586-3	chr7	127207478	127207678	+	803.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_144522, exon 1 of 9)	exon (NM_144522, exon 1 of 9)	890.0	NM_144522	68449.0	Mm.41420	NM_144522	ENSMUSG00000042492	Tbc1d10b	1110003P22Rik|C87963	TBC1 domain family, member 10b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-97871236-3	chr15	97871130	97871330	+	880.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009504, intron 4 of 9)	intron (NM_009504, intron 4 of 9)	-26728.0	NM_001204278	56233.0	Mm.384027	NM_019572	ENSMUSG00000022475	Hdac7	5830434K02Rik|HD7|HD7a|Hdac7a|mFLJ00062	histone deacetylase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-35700168-2	chr5	35700068	35700268	+	558.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359895, intron 16 of 17)	intron (NM_001359895, intron 16 of 17)	-20388.0	NM_030127	78558.0	Mm.274255	NM_030127	ENSMUSG00000029096	Htra3	2210021K23Rik|9530081K03Rik|Prsp|Tasp	HtrA serine peptidase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-107987118-7	chr5	107987017	107987217	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026062)	promoter-TSS (NM_026062)	-40.0	NM_026062	67266.0	Mm.277897	NM_026062	ENSMUSG00000029270	Fam69a	2900024C23Rik|AI315274	family with sequence similarity 69, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-30506976-4	chr17	30506901	30507101	+	964.974976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172618, intron 6 of 11)	intron (NM_172618, intron 6 of 11)	69286.0	NM_172618	224671.0	Mm.41220	NM_027060	ENSMUSG00000062202	Btbd9	1700023F20Rik|4930402L05|AI464421	BTB (POZ) domain containing 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-3133590-2	chr11	3133494	3133694	+	1000.0	f0_balb.idr|f1_balb.idr	intron (NM_030207, intron 29 of 32)	intron (NM_030207, intron 29 of 32)	9573.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-85231981-2	chr5	85231800	85232000	+	862.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	-814518.0	NM_007937	13839.0	Mm.137991	NM_007937	ENSMUSG00000029245	Epha5	AI854630|AW125296|Cek7|Ehk1|Els1|Hek7|Rek7|bsk	Eph receptor A5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-74650677-2	chr11	74650577	74650777	+	881.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081158, intron 1 of 25)	intron (NM_001081158, intron 1 of 25)	1182.0	NM_001081158	74148.0	Mm.214574	NM_001081158	ENSMUSG00000020741	Cluh	1300001I01Rik|Kiaa0664|mKIAA0664	clustered mitochondria (cluA/CLU1) homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-9340258-2	chr3	9340158	9340358	+	575.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-62820.0	NR_015499	320088.0	Mm.212908	NR_015499	ENSMUSG00000097365	C030034L19Rik	A130044O20Rik	RIKEN cDNA C030034L19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96197615-4	chr3	96197518	96197718	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026975)	promoter-TSS (NM_026975)	-32.0	NM_026975	69168.0	Mm.104531	NM_026975	ENSMUSG00000015943	Bola1	1810037G04Rik	bolA-like 1 (E. coli)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114891340-4	chr11	114891246	114891446	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_170758, intron 1 of 6)	Lx8|LINE|L1	1305.0	NM_170758	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	3.22429347790602	3.53138536280201	2.30990797720365	3.88560904961242	3.97788450559252	3.64850919206947	3.96099820572561	3.96040547942568	0.796152445816475	0.147658154062567	0.597789138528913
Merged-chr9-50905476-3	chr9	50905379	50905579	+	892.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178710, intron 9 of 15)	intron (NM_178710, intron 9 of 15)	48555.0	NM_001286553	73699.0	Mm.7726	NM_028614	ENSMUSG00000032058	Ppp2r1b	2410091N08Rik|AI790395	protein phosphatase 2, regulatory subunit A, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125480649-2	chr6	125480549	125480749	+	654.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007657, intron 1 of 7)	intron (NM_007657, intron 1 of 7)	14111.0	NM_007657	12527.0	Mm.210676	NM_007657	ENSMUSG00000030342	Cd9	Tspan29	CD9 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-9179768-2	chr13	9179668	9179868	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	85887.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-139205159-4	chr4	139205059	139205259	+	936.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271405, intron 1 of 8)	ORR1D2|LTR|ERVL-MaLR	11048.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	1.70260863534973	1.49814830493827	1.73299485414499	2.14672991412346	1.71674556098843	1.50816010587844	1.28507516045232	1.2558150663103	-1.14158305813708	0.296463966551942	0.7993201507169
Merged-chr3-158032323-6	chr3	158032217	158032417	+	933.7222289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001093753)	promoter-TSS (NM_001093753)	-545.0	NM_001093753	69207.0	Mm.223946	NM_026989	ENSMUSG00000055436	Srsf11	0610009J05Rik|2610019N13Rik|BF642805|Sfrs11	serine/arginine-rich splicing factor 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-55438724-2	chr12	55438624	55438824	+	600.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39899.0	NM_011968	26443.0	Mm.30210	NM_011968	ENSMUSG00000021024	Psma6	IOTA	proteasome (prosome, macropain) subunit, alpha type 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-85575208-3	chr17	85575113	85575313	+	880.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43183.0	NR_038084	100043902.0	Mm.150838	NR_015385	ENSMUSG00000093460	Six3os1	D17Mgi26|E130112H22Rik|Rncr1|Six3os	SIX homeobox 3, opposite strand 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-171090294-2	chr2	171090194	171090394	+	652.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	358487.0	NM_001163686	76829.0	Mm.41633	NM_029761	ENSMUSG00000027560	Dok5	2700055C10Rik	docking protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-43564033-2	chr7	43563933	43564133	+	636.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001008549, intron 1 of 4)	intron (NM_001008549, intron 1 of 4)	1663.0	NM_001008549	210104.0	Mm.333821	NM_001008549	ENSMUSG00000056592	Zfp658	-	zinc finger protein 658	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-172313206-5	chr1	172313168	172313368	+	998.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080419, intron 1 of 6)	intron (NM_080419, intron 1 of 6)	901.0	NM_080419	140559.0	Mm.271717	NM_080419	ENSMUSG00000038034	Igsf8	ESTM34|EWI-2|KCT-4|PGRL	immunoglobulin superfamily, member 8	protein-coding	2.21072660572	1.76197665184775	1.15780653433441	1.66139812771951	1.82099293328485	1.77436422546173	1.85304990563272	1.79759699508586	0.130254913641811	0.902325907606686	0.998431161219273
Merged-chr14-55194029-4	chr14	55193941	55194141	+	839.020874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27966.0	NM_027790	71412.0	Mm.85484	NM_027790	ENSMUSG00000022209	Dhrs2	5430405K24Rik|Hep27	dehydrogenase/reductase member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-28654433-4	chr12	28654316	28654516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286865, intron 3 of 7)	intron (NM_001286865, intron 3 of 7)	4814.0	NM_001286865	19819.0	Mm.10152	NM_011275	ENSMUSG00000020630	Rnaseh1	-	ribonuclease H1	protein-coding	2.20279492054686	3.69944981912976	2.64026126271331	2.0626931871417	1.14174193792324	2.65019270251763	1.24219364905165	2.22081069151429	-1.71725422994548	0.0795670074930045	0.429118200135331
Merged-chr5-139395354-2	chr5	139395254	139395454	+	881.8333130000001	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001362206, exon 2 of 2)	3' UTR (NM_001362206, exon 2 of 2)	5450.0	NM_001038703	80290.0	Mm.270003	NM_030258	ENSMUSG00000044197	Gpr146	BC003323|D830046C22Rik|PGR8	G protein-coupled receptor 146	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-39464014-4	chr1	39463950	39464150	+	930.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357521, intron 1 of 19)	intron (NM_001357521, intron 1 of 19)	14697.0	NM_018775	54610.0	Mm.387293	NM_018775	ENSMUSG00000003134	Tbc1d8	AD3|HBLP1|VRP	TBC1 domain family, member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-3266403-4	chr11	3266281	3266481	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007879)	promoter-TSS (NM_007879)	82.0	NM_007879	13494.0	Mm.3250	NM_007879	ENSMUSG00000020457	Drg1	AA408859|AI132520|DRG-1|NEDD-3|Nedd3	developmentally regulated GTP binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-37656354-3	chr3	37656234	37656434	+	820.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16387.0	NM_011896	24063.0	Mm.330986	NM_011896	ENSMUSG00000037211	Spry1	sprouty1|spry-1	sprouty RTK signaling antagonist 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80292391-4	chr10	80292315	80292515	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310726)	promoter-TSS (NM_001310726)	-16.0	NM_009091	20054.0	Mm.643	NM_009091	ENSMUSG00000063457	Rps15	rig	ribosomal protein S15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-9895844-1	chr3	9895744	9895944	+	579.0	f1_c57bl6.idr	Intergenic	Intergenic	-62165.0	NM_001195031	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	1.12989318281597	0.652380178628398	0.63393698610094	2.26264930155959	1.14216650101333	0.656452617477966	0.638059396973723	1.79010695682214	-0.696370827661227	0.651013687949402	0.985970995710291
Merged-chr14-27230904-4	chr14	27230803	27231003	+	847.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289686, intron 3 of 12)	intron (NM_001289686, intron 3 of 12)	-7107.0	NM_027871	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-20894360-4	chr2	20894259	20894459	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001128084, intron 3 of 24)	MTD|LTR|ERVL-MaLR	73362.0	NM_001081364	71435.0	Mm.28507	NM_001081364	ENSMUSG00000036591	Arhgap21	5530401C11Rik|AA416458|ARHGAP10	Rho GTPase activating protein 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-130903933-4	chr7	130903833	130904033	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133942, intron 6 of 9)	intron (NM_133942, intron 6 of 9)	-4335.0	NR_106028	102466219.0		NR_106028	ENSMUSG00000104914	Mir7061	mmu-mir-7061	microRNA 7061	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-87324046-2	chr3	87323947	87324147	+	786.583374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-33834.0	NM_009690	11801.0	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	2.9493773395305	2.00514175012436	1.71134979666717	3.10775540970917	2.37354199436917	3.09255611500109	1.72459902770289	3.25332877708466	0.301355101928857	0.725270817196629	0.998431161219273
Merged-chr18-78683458-2	chr18	78683358	78683558	+	756.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-86508.0	NM_207651	27411.0	Mm.44158	NM_030683	ENSMUSG00000024552	Slc14a2	UT-A1|UT-A3	solute carrier family 14 (urea transporter), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-4617007-4	chr2	4616923	4617123	+	957.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35112.0	NM_026045	67229.0	Mm.38529	NM_026045	ENSMUSG00000039449	Prpf18	2810441A10Rik	pre-mRNA processing factor 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-59189757-2	chr4	59189657	59189857	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011673, intron 1 of 8)	CpG	207.0	NM_011673	22234.0	Mm.198803	NM_011673	ENSMUSG00000028381	Ugcg	AU043821|C80537|Epcs21|GlcT-1|Ugcgl	UDP-glucose ceramide glucosyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-124701769-2	chr4	124701669	124701869	+	874.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010213, intron 1 of 5)	intron (NM_010213, intron 1 of 5)	1070.0	NM_010213	14201.0	Mm.331856	NM_010213	ENSMUSG00000032643	Fhl3	SLIM2	four and a half LIM domains 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-88123297-2	chr16	88123197	88123397	+	563.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146072, intron 1 of 16)	intron (NM_146072, intron 1 of 16)	166961.0	NM_146072	14805.0	Mm.5134	NM_010348	ENSMUSG00000022935	Grik1	A830007B11Rik|D16Ium24|D16Ium24e|GluK1|GluK5|Glur-5|Glur5|Glurbeta1	glutamate receptor, ionotropic, kainate 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-82767400-1	chr10	82767300	82767500	+	829.0	f0_balb.idr	Intergenic	Intergenic	-3259.0	NM_010914	18045.0	Mm.245998	NM_010914	ENSMUSG00000020248	Nfyb	AA985999|Cbf-A	nuclear transcription factor-Y beta	protein-coding	1.90098104668559	2.8100144239983	1.38878033369246	2.42312257986506	2.68823486043438	3.38747186258052	2.08415494698393	2.54722331472931	1.0679820488787	0.219530296385161	0.710826235364411
Merged-chr10-81313217-2	chr10	81313117	81313317	+	761.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001293647, intron 12 of 17)	intron (NM_001293647, intron 12 of 17)	-7886.0	NM_027381	70312.0	Mm.87628	NM_027381	ENSMUSG00000034889	Cactin	2510012J08Rik	cactin, spliceosome C complex subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-22061859-4	chr16	22061741	22061941	+	870.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183029, intron 15 of 15)	intron (NM_183029, intron 15 of 15)	52357.0	NM_001357424	75826.0	Mm.297431	NM_029457	ENSMUSG00000022855	Senp2	2310007L05Rik|4930538C18Rik|AI646780|AW554757|Smt3ip2|SuPr-1|mKIAA1331	SUMO/sentrin specific peptidase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-145111598-4	chr7	145111504	145111704	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	96515.0	NR_033626	100040049.0	Mm.102235	NR_033626	ENSMUSG00000109305	1810010D01Rik	Gm2572	RIKEN cDNA 1810010D01 gene	ncRNA	4.85433239077107	5.04141517123406	4.80804072035105	4.72595016094233	4.36515572114284	4.41159999426453	5.66649693086481	4.26012939114303	-0.0572285957068748	0.886096435527531	0.998431161219273
Merged-chr17-83646570-4	chr17	83646494	83646694	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14699.0	NM_153512	225030.0	Mm.223506	NM_153512	ENSMUSG00000045053	Kcng3	KV6.3|Kv10.1a|Kv10.1b	potassium voltage-gated channel, subfamily G, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-104170607-4	chr8	104170405	104170605	+	809.354187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001141922)	promoter-TSS (NM_001141922)	-8.0	NM_001141924	65115.0	Mm.41849	NM_001141922	ENSMUSG00000031872	Bean1	Bean	brain expressed, associated with Nedd4, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-69793812-2	chr8	69793712	69793912	+	824.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_133224, exon 2 of 26)	exon (NM_133224, exon 2 of 26)	2649.0	NM_133224	170759.0	Mm.186066	NM_133224	ENSMUSG00000031862	Atp13a1	Atp13a|Cgi152|catp	ATPase type 13A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-130663250-4	chr4	130663177	130663377	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159604)	promoter-TSS (NM_001159604)	-44.0	NM_030722	80912.0	Mm.440206	NM_030722	ENSMUSG00000028580	Pum1	AA517475|Pumm|mKIAA0099	pumilio RNA-binding family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-33514737-1	chr6	33514637	33514837	+	904.0	f0_balb.idr	intron (NM_009148, intron 9 of 17)	intron (NM_009148, intron 9 of 17)	265609.0	NM_001347089	20336.0	Mm.265512	NM_009148	ENSMUSG00000029763	Exoc4	C78892|Sec8|Sec8l1	exocyst complex component 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124622173-2	chr5	124622073	124622273	+	591.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_026486, intron 13 of 18)	B3|SINE|B2	-6879.0	NM_011596	21871.0	Mm.1158	NM_011596	ENSMUSG00000038023	Atp6v0a2	8430408C20Rik|AI385560|ATP6a2|AW489264|Atp6n1d|Atp6n2|C76904|ISF|J6B7|SHIF|Stv1|TJ6M|TJ6s|Tj6|V-ATPase 116 kDa|V-ATPase a2	ATPase, H+ transporting, lysosomal V0 subunit A2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-34874396-2	chr4	34874296	34874496	+	584.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013889, intron 1 of 7)	intron (NM_013889, intron 1 of 7)	8552.0	NM_013889	30046.0	Mm.38193	NM_013889	ENSMUSG00000039967	Zfp292	5730450D02Rik|5830493J20Rik|9430062L07Rik|AI449016|Krox-10|Zfp-15|Zfp15|Zn-15|Zn-16|mKIAA0530	zinc finger protein 292	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52191247-2	chr13	52191147	52191347	+	737.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	94506.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35882472-2	chr17	35882372	35882572	+	608.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_026987, exon 5 of 20)	exon (NM_026987, exon 5 of 20)	2694.0	NM_026987	69192.0	Mm.390986	NM_026987	ENSMUSG00000024422	Dhx16	2410006N22Rik|DBP2|Ddx16|mKIAA0577	DEAH (Asp-Glu-Ala-His) box polypeptide 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-99236002-2	chr6	99235902	99236102	+	658.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001197321, intron 2 of 17)	intron (NM_001197321, intron 2 of 17)	30513.0	NM_001197321	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102422939-4	chr12	102422829	102423029	+	764.776794	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011175, intron 2 of 13)	L1MB7|LINE|L1	16884.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-49753269-3	chr7	49753191	49753391	+	913.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5815.0	NM_001146053	53415.0	Mm.20801	NM_016865	ENSMUSG00000039745	Htatip2	AW111545|Cc3|Tip30	HIV-1 Tat interactive protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-79252570-3	chr11	79252479	79252679	+	850.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019653, intron 1 of 8)	intron (NM_019653, intron 1 of 8)	2116.0	NM_019653	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-26213814-4	chr11	26213665	26213865	+	859.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-3189.0	NR_027973	70626.0	Mm.379180	NM_027486		5730522E02Rik	-	RIKEN cDNA 5730522E02 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-59735636-4	chr10	59735533	59735733	+	950.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359267, intron 3 of 11)	intron (NM_001359267, intron 3 of 11)	33070.0	NM_001291443	216001.0	Mm.27199	NM_144822	ENSMUSG00000020111	Micu1	C730016L05Rik|Calc|Cbara1	mitochondrial calcium uptake 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117313330-4	chr10	117313223	117313423	+	979.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20455.0	NM_013590	17110.0	Mm.177539	NM_013590	ENSMUSG00000069515	Lyz1	Lyz|Lyzf3|Lzp-s	lysozyme 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-76604159-4	chr16	76604053	76604253	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20B2|LTR|ERVK	55358.0	NR_155449	102632730.0		NR_155449		Gm30726	-	predicted gene, 30726	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-8669934-3	chr3	8669831	8670031	+	930.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2893.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-87215351-4	chr3	87215226	87215426	+	831.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-40579.0	NM_130867	170643.0	Mm.89552	NM_130867	ENSMUSG00000041734	Kirrel	6720469N11Rik|Kirrel1|Neph1	kirre like nephrin family adhesion molecule 1	protein-coding	3.35561145989653	2.86351897750683	3.62586300339777	3.5289202803763	3.72229165486009	3.35846998509422	3.03943959572067	2.82803969691422	-0.143484155311732	0.806735695321365	0.998431161219273
Merged-chr8-13152458-2	chr8	13152358	13152558	+	887.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6703.0	NM_001317353	16783.0	Mm.16716	NM_010684	ENSMUSG00000031447	Lamp1	CD107a|LGP-120|LGP-A|Lamp-1|P2B|Perk	lysosomal-associated membrane protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-120234156-3	chr10	120234041	120234241	+	772.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7081.0	NM_025431	66225.0	Mm.291755	NM_025431	ENSMUSG00000020224	Llph	1190005P17Rik	LLP homolog, long-term synaptic facilitation (Aplysia)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-65574776-2	chr5	65574676	65574876	+	553.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016786, intron 3 of 6)	RMER6A|LTR|ERVK	37531.0	NM_001310619	53323.0	Mm.319512	NM_016786	ENSMUSG00000029203	Ube2k	AW492011|D5Ertd601e|E2-25k|HIP-2|Hip2|Hypg|Lig	ubiquitin-conjugating enzyme E2K	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-87418903-2	chr1	87418803	87419003	+	986.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146112, intron 15 of 28)	intron (NM_146112, intron 15 of 28)	-24174.0	NM_001110227	100040591.0	Mm.443539	NM_001110227	ENSMUSG00000079436	Kcnj13	-	potassium inwardly-rectifying channel, subfamily J, member 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-35308739-2	chr12	35308629	35308829	+	844.5	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-113832.0	NR_030449	751520.0		NR_030449	ENSMUSG00000076253	Mir680-3	Mirn680-3	microRNA 680-3	ncRNA	1.34041725304493	0.582377816273745	0.571999507555037	0.563910101288814	1.18627331650376	0.584701385113523	1.31994344308522	1.16080775191238	1.21507357502692	0.470928296861691	0.92584289530549
Merged-chr2-156146786-2	chr2	156146686	156146886	+	956.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001164216)	TTS (NM_001164216)	2553.0	NM_025946	67067.0	Mm.371623	NM_025946	ENSMUSG00000067847	Romo1	2010100O12Rik|AI853864	reactive oxygen species modulator 1	protein-coding	1.86725023064337	2.46347043764194	2.56213791473409	2.30897150971621	1.19645519559942	1.95611915243317	1.51278975091437	2.41497574019467	-1.14840172654335	0.2463524872687	0.74563204527445
Merged-chr1-54979540-2	chr1	54979518	54979718	+	767.125	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47860.0	NM_031179	81898.0	Mm.279736	NM_031179	ENSMUSG00000025982	Sf3b1	155kDa|2810001M05Rik|AA409119|Prp10|SAP155|SF3b155|TA-8|Targ4	splicing factor 3b, subunit 1	protein-coding	-0.258114899952938	0.458582033829485	-0.400654685181825	-0.404244101071953	-0.121269571299927	-0.394970441898952	-0.399630094108539	-0.403616438325458	-2.06345515265467	0.408958481013055	1
Merged-chr3-52199164-3	chr3	52199070	52199270	+	745.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69167.0	NM_019739	56458.0	Mm.29891	NM_019739	ENSMUSG00000044167	Foxo1	AI876417|Afxh|FKHR|Fkhr1|Foxo1a	forkhead box O1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-88495441-3	chr1	88495358	88495558	+	897.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	14608.0	NM_008132	14659.0	Mm.5187	NM_008132	ENSMUSG00000062310	Glrp1	GRP-1	glutamine repeat protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-27354567-2	chr16	27354467	27354667	+	728.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198166, intron 4 of 4)	intron (NM_198166, intron 4 of 4)	15672.0	NM_198166	224065.0	Mm.326918	NM_198166	ENSMUSG00000056423	Uts2b	Gm538|U2B|Urp|Uts2d	urotensin 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141636465-2	chr7	141636365	141636565	+	621.3000490000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001330001, intron 31 of 33)	intron (NM_001330001, intron 31 of 33)	15764.0	NR_106030	102466798.0		NR_106030	ENSMUSG00000098759	Mir7063	Gm27654|mmu-mir-7063	microRNA 7063	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85619692-2	chr12	85619592	85619792	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205053, intron 2 of 3)	intron (NM_001205053, intron 2 of 3)	19674.0	NM_001205053	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-122638831-4	chr3	122638733	122638933	+	973.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19119.0	NM_001114665	214459.0	Mm.209491	NM_153118	ENSMUSG00000039735	Fnbp1l	2610318I01Rik|AW548221|TOCA1|toca-1	formin binding protein 1-like	protein-coding	3.89911670130085	4.01378872082591	4.34347472113419	4.87211216615048	4.54409210899438	3.30632978178797	5.43535712231731	4.67223405777106	0.439913478510934	0.356985680361122	0.853942173366938
Merged-chr3-84169096-4	chr3	84169011	84169211	+	905.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271728, intron 10 of 11)	intron (NM_001271728, intron 10 of 11)	-5527.0	NR_036654	624713.0	Mm.442604	NR_036654		Gm6525	EG624713	ribosomal protein L36a pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-98250282-2	chr12	98250182	98250382	+	849.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008079, intron 5 of 16)	Lx9|LINE|L1	9177.0	NM_008079	14420.0	Mm.5120	NM_008079	ENSMUSG00000021003	Galc	2310068B06Rik|A930008M05Rik|AW212969|AW413532|Gacy|twi|twitcher	galactosylceramidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-11775111-1	chr11	11775011	11775211	+	1000.0	f1_c57bl6.idr	Intergenic	Intergenic	33851.0	NM_021891	60530.0	Mm.236114	NM_021891	ENSMUSG00000035455	Fignl1	-	fidgetin-like 1	protein-coding	-0.351840090659414	-0.336227010650132	-0.341316360585776	0.504851929815183	-0.350858518202271	0.201740860134881	-0.340191762089089	-0.344569858776015	-0.904212865006208	0.728728977961144	1
Merged-chr5-88596230-4	chr5	88596128	88596328	+	972.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359208, intron 2 of 13)	MTD|LTR|ERVL-MaLR	12715.0	NM_001359209	52822.0	Mm.270469	NM_027530	ENSMUSG00000029291	Rufy3	2810428M05Rik|6330416M07Rik|AW455998|AW538594|D5Bwg0860e|Ripx|Rpipx	RUN and FYVE domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-113793639-2	chr13	113793539	113793739	+	934.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172595)	promoter-TSS (NM_172595)	-869.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167746320-2	chr2	167746220	167746420	+	802.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55143.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-79633635-4	chr12	79633516	79633716	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	291117.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-61255797-2	chr2	61255697	61255897	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	-280646.0	NR_045335	100038493.0	Mm.388076	NR_045335	ENSMUSG00000075325	Gm13582	-	predicted gene 13582	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-45014808-4	chr19	45014700	45014900	+	867.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145503)	promoter-TSS (NM_145503)	-376.0	NM_145503	226154.0	Mm.28204	NM_145503	ENSMUSG00000035342	Lzts2	BC014695|LAPSER1|mKIAA1813	leucine zipper, putative tumor suppressor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89906422-2	chr3	89906322	89906522	+	569.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010559, intron 1 of 9)	intron (NM_010559, intron 1 of 9)	6774.0	NM_001310676	16194.0	Mm.2856	NM_010559	ENSMUSG00000027947	Il6ra	CD126|IL-6R|IL-6R-alpha|IL-6RA|Il6r	interleukin 6 receptor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-169700322-4	chr2	169700203	169700403	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080455, intron 1 of 1)	intron (NM_080455, intron 1 of 1)	66657.0	NM_080455	228911.0	Mm.315789	NM_080455	ENSMUSG00000047907	Tshz2	2900073F20Rik|B830045G17|Mtsh2|Sdccag33l|Tsh2|Zfp218|mKIAA4248|teashirt2	teashirt zinc finger family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-59822259-4	chr4	59822102	59822302	+	938.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172468, intron 1 of 8)	RMER6A|LTR|ERVK	16552.0	NM_172468	209131.0	Mm.259705	NM_172468	ENSMUSG00000028385	Snx30	4732481H14Rik|C030041J06Rik	sorting nexin family member 30	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-73554601-4	chr2	73554498	73554698	+	877.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-25111.0	NM_153138	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-5202330-2	chr16	5202230	5202430	+	645.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_027804, intron 1 of 8)	B4A|SINE|B4	1682.0	NM_013796	27426.0	Mm.215641	NM_013796	ENSMUSG00000023143	Nagpa	AI596180|UCE	N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-24908947-4	chr5	24908838	24909038	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001170556)	promoter-TSS (NM_001170556)	-429.0	NM_001170555	108099.0	Mm.33649	NM_145401	ENSMUSG00000028944	Prkag2	2410051C13Rik|AAKG|AAKG2|AI854673|H91620p|WPWS	protein kinase, AMP-activated, gamma 2 non-catalytic subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-16490055-3	chr5	16489959	16490159	+	788.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MCa|LINE|L1	-63436.0	NM_001289460	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126755484-2	chr8	126755402	126755602	+	937.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-93518.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	2.02608467438062	1.28816028072214	0.846773848494198	1.35381486999985	1.29162377715758	1.10395811583045	0.850298705170234	1.79744882239857	-0.500607055383764	0.706731853300349	0.998431161219273
Merged-chr14-25548022-4	chr14	25547921	25548121	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 3 of 23)	intron (NM_183208, intron 3 of 23)	13582.0	NR_037236	100526533.0		NR_037236	ENSMUSG00000093081	Mir3075	mir-3075|mmu-mir-3075	microRNA 3075	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-63819946-2	chr6	63819846	63820046	+	714.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008167, intron 2 of 15)	intron (NM_008167, intron 2 of 15)	563089.0	NM_008167	14804.0	Mm.439651	NM_008167	ENSMUSG00000071424	Grid2	B230104L07Rik|GluD2|GluRdelta2|Lc|Lc<J>|MMS10-AC|Ms10ac|cpr|ho|nmf408|tpr	glutamate receptor, ionotropic, delta 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191576042-4	chr1	191575932	191576132	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029766)	promoter-TSS (NM_029766)	396.0	NM_001306204	77065.0	Mm.338175	NM_178632	ENSMUSG00000037461	Ints7	5930412E23Rik|int7	integrator complex subunit 7	protein-coding	6.61002446704082	5.95582767071747	6.09608696475094	6.39311766092189	6.67989334141001	6.50371115991936	6.09420738257584	6.29799478939174	0.128167265913036	0.574112155154224	0.964634218270386
Merged-chr3-66970993-2	chr3	66970893	66971093	+	718.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001302358)	TTS (NM_001302358)	7818.0	NM_001302358	20429.0	Mm.39093	NM_013665	ENSMUSG00000027833	Shox2	6330543G17Rik|OG12|Og12x|Prx3|SHOT	short stature homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53038043-2	chr4	53037943	53038143	+	775.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 46 of 49)	intron (NM_013454, intron 46 of 49)	26163.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-50114443-4	chr6	50114346	50114546	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361248, intron 1 of 13)	intron (NM_001361248, intron 1 of 13)	3586.0	NM_001361248	56524.0	Mm.41288	NM_008016	ENSMUSG00000038388	Mpp6	P55t|Pals2	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	protein-coding	5.2147188798847	4.73722774729847	4.03494303091702	5.23934249603082	4.66366229313846	4.54861751554661	4.97464806154379	5.20504693196958	-0.0258101831733228	0.944955553310822	0.998431161219273
Merged-chr16-38095015-2	chr16	38094915	38095115	+	805.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347232, intron 1 of 11)	B1_Mus2|SINE|Alu	-5755.0	NR_033221	414072.0	Mm.483602	NR_033221		BC031361	-	cDNA sequence BC031361	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-13685837-4	chr17	13685741	13685941	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74700.0	NR_151731	17356.0	Mm.59167	NM_010806	ENSMUSG00000068036	Afdn	5033403D15Rik|AF6|Af-6|Afadin|Gm314|I-afadin|Mllt4|S-afadin	afadin, adherens junction formation factor	protein-coding	2.8186815838187	1.15342510500289	1.38248942640765	2.39902259301903	1.77888414314028	2.01187431915626	2.30494882949182	1.10446646524479	-0.635299244354242	0.573141864480788	0.964496317550327
Merged-chr19-53248304-4	chr19	53248240	53248440	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_036590)	TTS (NR_036590)	6865.0	NR_036590	69319.0	Mm.57452	NR_036590		1700001K23Rik	-	RIKEN cDNA 1700001K23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41997961-1	chr19	41997861	41998061	+	770.0	f0_balb.idr	intron (NM_145500, intron 1 of 2)	intron (NM_145500, intron 1 of 2)	16198.0	NM_145500	226122.0	Mm.22948	NM_145500	ENSMUSG00000025171	Ubtd1	BC016129	ubiquitin domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-40526267-3	chr3	40526131	40526331	+	804.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3319.0	NR_040445	100040882.0	Mm.272869	NR_040445	ENSMUSG00000037884	1700017G19Rik	-	RIKEN cDNA 1700017G19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-143472894-3	chr5	143472800	143473000	+	820.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144915, intron 2 of 14)	intron (NM_144915, intron 2 of 14)	8407.0	NM_144915	231871.0	Mm.469963	NM_144915	ENSMUSG00000039206	Daglb	E330036I19Rik	diacylglycerol lipase, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120360717-2	chr11	120360617	120360817	+	901.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172802)	promoter-TSS (NM_172802)	-817.0	NM_172802	238021.0	Mm.481403	NM_172802	ENSMUSG00000025380	Fscn2	A930022G03|Ahl8|C630046B20Rik	fascin actin-bundling protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-21666683-3	chr16	21666587	21666787	+	948.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001881, intron 1 of 1)	intron (NM_001001881, intron 1 of 1)	27978.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-112444085-1	chr14	112443985	112444185	+	584.0	f1_balb.idr	Intergenic	Lx8|LINE|L1	768970.0	NM_198865	75409.0	Mm.235097	NM_029273	ENSMUSG00000033214	Slitrk5	2610019D03Rik	SLIT and NTRK-like family, member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120518281-4	chr11	120518194	120518394	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12433.0	NM_008101	14527.0	Mm.22329	NM_008101	ENSMUSG00000025127	Gcgr	GR	glucagon receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-40692667-4	chr11	40692577	40692777	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134017)	promoter-TSS (NM_134017)	5.0	NM_134017	108645.0	Mm.293771	NM_134017	ENSMUSG00000042032	Mat2b	1110064C04Rik|2410018D16Rik|AI182287|AU022853|MAT-II|MATIIbeta|TGR	methionine adenosyltransferase II, beta	protein-coding	4.36234485243143	4.44212079158093	4.7021966354785	3.29981172391439	5.30911224004757	4.588069404014	3.54808883380603	5.31680042361767	0.71600042266302	0.131149378026376	0.566561535367423
Merged-chr13-111968762-4	chr13	111968666	111968866	+	997.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	100830.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	2.15751432002283	2.78806329948508	3.50179847757677	2.40220368047306	2.04566622677037	1.70548681862147	2.49510449048885	1.81614565523474	-1.62360608824356	0.055048635194554	0.344954835514063
Merged-chr17-27051127-2	chr17	27051027	27051227	+	652.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6177.0	NM_080553	16440.0	Mm.458106	NM_080553	ENSMUSG00000042644	Itpr3	IP3R 3|Ip3r3|Itpr-3|tf	inositol 1,4,5-triphosphate receptor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-63872969-2	chr17	63872869	63873069	+	668.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037997, intron 1 of 18)	B4A|SINE|B4	-5097.0	NM_001286415	14158.0	Mm.23039	NM_008000	ENSMUSG00000000127	Fer	AV082135|C330004K01Rik|Fert|Fert2	fer (fms/fps related) protein kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-37207562-4	chr19	37207440	37207640	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290828)	promoter-TSS (NM_001290828)	-5.0	NM_027314	69104.0	Mm.175989	NM_027314	ENSMUSG00000023307	March5	1810015H18Rik|2310008I22Rik|2700055A20Rik|5730499H23Rik|E130202O05Rik|MARCH-V|MITOL|Marchv|Rnf153	membrane-associated ring finger (C3HC4) 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-3888796-3	chr18	3888696	3888896	+	697.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_A|LINE|L1	-277036.0	NM_026092	67328.0	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-51209179-2	chr6	51209079	51209279	+	792.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60731.0	NR_029719	387166.0		NR_029719	ENSMUSG00000065505	Mir148a	Mirn148|Mirn148a|mir-148a	microRNA 148a	ncRNA	2.5046970153412	3.33936467259559	3.05223996219109	3.59668533270874	1.71816225228163	2.38126830314932	3.07634997324618	3.37369349976419	-0.675994745191504	0.360788774848515	0.856724578565606
Merged-chr6-125439272-1	chr6	125439172	125439372	+	708.0	f1_balb.idr	Intergenic	Intergenic	55488.0	NM_007657	12527.0	Mm.210676	NM_007657	ENSMUSG00000030342	Cd9	Tspan29	CD9 antigen	protein-coding	1.14603362417486	1.92179168225018	2.36814726582338	2.56185566882354	1.15269800602647	1.93634703902547	2.38770030420495	2.57561141757314	0.034887020327765	0.97423741024331	0.998431161219273
Merged-chr5-105110544-7	chr5	105110477	105110677	+	998.8095089999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_153378)	promoter-TSS (NR_153378)	-285.0	NM_172777	236573.0	Mm.425261	NM_172777	ENSMUSG00000029298	Gbp9	-	guanylate-binding protein 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-24479726-2	chr8	24479626	24479826	+	830.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	5260.0	NR_035483									0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-77773761-2	chr15	77773661	77773861	+	748.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_022410, intron 24 of 40)	intron (NM_022410, intron 24 of 40)	-16751.0	NM_001357895	239552.0	Mm.125650	NM_001081970	ENSMUSG00000056656	Apol8	9830006J20Rik|APOL-II|Apol2	apolipoprotein L 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-12757463-4	chr8	12757406	12757606	+	720.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015804, intron 1 of 28)	CpG	490.0	NM_001293667	50770.0	Mm.257837	NM_015804	ENSMUSG00000031441	Atp11a	4930558F19Rik|AU040868|Atpc1h|Ih	ATPase, class VI, type 11A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-60874765-2	chr2	60874665	60874865	+	615.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_020296, intron 1 of 13)	(TG)n|Simple_repeat|Simple_repeat	6673.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-83645201-4	chr10	83645093	83645293	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145220, intron 1 of 20)	intron (NM_145220, intron 1 of 20)	3471.0	NM_145220	216190.0	Mm.282985	NM_145220	ENSMUSG00000020263	Appl2	Dip3b	adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-81109925-4	chr13	81109841	81110041	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 87 of 89)	intron (NM_054053, intron 87 of 89)	145867.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36086775-3	chr1	36086691	36086891	+	885.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015818, intron 1 of 1)	ORR1B1|LTR|ERVL-MaLR	18391.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-62881972-1	chr4	62881872	62882072	+	679.0	f1_balb.idr	Intergenic	Intergenic	-83602.0	NM_028326	72701.0	Mm.26479	NM_028326	ENSMUSG00000028358	Zfp618	2810031P15Rik|2810040O04Rik|AI415580|AI505139|D430033D05Rik|Nedd10|Znf618|bM257P7.1	zinc finger protein 618	protein-coding	0.90549946186451	0.747963712268528	0.723229139044694	1.35368033651254	0.673828885986228	1.79609738094679	2.75253484244465	1.51665964329871	2.96073628781241	0.0310694665152624	0.243388011809531
Merged-chr8-4594649-2	chr8	4594549	4594749	+	618.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR6_Mm|LTR|ERV1	-18521.0	NM_145591	233987.0	Mm.102799	NM_145591	ENSMUSG00000058748	Zfp958	-	zinc finger protein 958	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-142743591-2	chr5	142743491	142743691	+	720.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001122730, exon 17 of 28)	exon (NM_001122730, exon 17 of 28)	41490.0	NM_146257	243328.0	Mm.125942	NM_146257	ENSMUSG00000050822	Slc29a4	ENT4|mPMAT	solute carrier family 29 (nucleoside transporters), member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19476287-2	chr7	19476187	19476387	+	591.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-17793.0	NM_172279	232944.0	Mm.260504	NM_172279	ENSMUSG00000030397	Mark4	2410090P21Rik|C79806|Markl1	MAP/microtubule affinity regulating kinase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-45017510-4	chr19	45017419	45017619	+	931.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001130526)	promoter-TSS (NM_001130526)	-616.0	NM_001130526	226154.0	Mm.28204	NM_145503	ENSMUSG00000035342	Lzts2	BC014695|LAPSER1|mKIAA1813	leucine zipper, putative tumor suppressor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-22053495-2	chr9	22053395	22053595	+	829.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1472.0	NM_010487	15571.0	Mm.390167	NM_010487	ENSMUSG00000003410	Elavl3	2600009P04Rik|Huc|PLE21|mHuC	ELAV like RNA binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36308781-1	chr1	36308681	36308881	+	550.0	f0_balb.idr	intron (NM_001290727, intron 1 of 5)	intron (NM_001290727, intron 1 of 5)	1048.0	NM_001172205	214855.0	Mm.34316	NM_145996	ENSMUSG00000037447	Arid5a	D430024K22Rik|Mrf1	AT rich interactive domain 5A (MRF1-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-20844555-2	chr1	20844455	20844655	+	570.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-24243.0	NM_008563	17215.0	Mm.4502	NM_008563	ENSMUSG00000041859	Mcm3	AL033361|C80350|Mcmd|P1|P1-MCM3|p1.m	minichromosome maintenance complex component 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-121705048-5	chr9	121704979	121705179	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178677)	promoter-TSS (NM_178677)	-50.0	NM_001164562	215474.0	Mm.31421	NM_178677	ENSMUSG00000061536	Sec22c	4932412K21|5930407I15Rik|C530046H07|Sec22l3	SEC22 homolog C, vesicle trafficking protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120461919-2	chr11	120461819	120462019	+	850.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_152807, intron 4 of 5)	intron (NM_152807, intron 4 of 5)	3790.0	NM_152807	67291.0	Mm.103384	NM_152807	ENSMUSG00000049957	Ccdc137	3110023B02Rik	coiled-coil domain containing 137	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-24715356-3	chr8	24715258	24715458	+	830.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001324489, intron 5 of 21)	intron (NM_001324489, intron 5 of 21)	10494.0	NM_009619	11497.0	Mm.5168	NM_009619	ENSMUSG00000031553	Adam3	Cyrn1|Taz83|tMDC	a disintegrin and metallopeptidase domain 3 (cyritestin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101643762-2	chr11	101643662	101643862	+	891.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15813.0	NM_025654	66599.0	Mm.41449	NM_025654	ENSMUSG00000010362	Rdm1	2410008M22Rik|AW212028|Rad52b	RAD52 motif 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-74219484-1	chr18	74219384	74219584	+	562.0	f1_c57bl6.idr	exon (NM_028868, exon 9 of 15)	exon (NM_028868, exon 9 of 15)	3272.0	NM_028868	74322.0	Mm.17537	NM_028868	ENSMUSG00000024560	Cxxc1	2410002I16Rik|5830420C16Rik|AI426635|Cfp1|Cgbp|PHF18	CXXC finger 1 (PHD domain)	protein-coding	0.752533041204282	0.216311009950892	0.210165907931916	0.733015096464561	0.198728847477328	0.412381773100381	0.783463309641195	0.206253933922033	-0.524594979243415	0.791768198239104	1
Merged-chr15-25862144-4	chr15	25862049	25862249	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034851, intron 1 of 8)	intron (NM_001034851, intron 1 of 8)	18851.0	NM_001034851	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125130069-2	chr6	125129969	125130169	+	564.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_145979, exon 39 of 39)	3' UTR (NM_145979, exon 39 of 39)	-1814.0	NM_138747	110109.0	Mm.29203	NM_138747	ENSMUSG00000038279	Nop2	120kDa|A530002O17|Nol1	NOP2 nucleolar protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-121070568-3	chr7	121070497	121070697	+	745.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_030691, exon 2 of 6)	exon (NM_030691, exon 2 of 6)	3933.0	NM_030691	80719.0	Mm.160384	NM_030691	ENSMUSG00000035004	Igsf6	-	immunoglobulin superfamily, member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-140767858-4	chr6	140767760	140767960	+	969.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	140975.0	NM_001309436	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33347339-4	chr16	33347221	33347421	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33415.0	NR_045709	100502742.0	Mm.217880	NR_045709	ENSMUSG00000097318	1700007L15Rik	linc-Iqcg|linc1609	RIKEN cDNA 1700007L15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-116857826-4	chr3	116857728	116857928	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1739.0	NM_001113478	20321.0	Mm.66293	NM_009146	ENSMUSG00000033386	Frrs1	AI131732|Sdfr2	ferric-chelate reductase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33397272-3	chr16	33397164	33397364	+	918.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358570, intron 1 of 8)	intron (NM_001358570, intron 1 of 8)	-3181.0	NM_001358569	22661.0	Mm.392667	NM_011749	ENSMUSG00000022811	Zfp148	2210405J08Rik|AI480666|AW045217|BERF-1|BFCOL1|ZBP-89|Znf148	zinc finger protein 148	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-108382020-6	chr3	108381926	108382126	+	954.111084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040560, intron 2 of 2)	intron (NR_040560, intron 2 of 2)	1715.0	NR_040560	100038453.0	Mm.214328	NR_040560	ENSMUSG00000074281	Gm12522	-	predicted gene 12522	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-15294322-3	chr10	15294192	15294392	+	849.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-497485.0	NR_131087	77538.0	Mm.128235	NR_131087	ENSMUSG00000112227	C330004P14Rik	-	RIKEN cDNA C330004P14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-61666061-4	chr14	61665960	61666160	+	954.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028264, intron 1 of 6)	intron (NR_028264, intron 1 of 6)	16313.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-61281268-3	chr10	61281173	61281373	+	863.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7835.0	NM_001081127	237360.0	Mm.333252	NM_001081127	ENSMUSG00000059901	Adamts14	Adamts-14|TS14	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-74283065-4	chr18	74282933	74283133	+	839.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029424)	promoter-TSS (NR_029424)	-67.0	NM_028948	74453.0	Mm.182293	NM_028948	ENSMUSG00000035394	Cfap53	4933415I03Rik|Ccdc11	cilia and flagella associated protein 53	protein-coding	1.28450080053187	0.55674446986223	1.14599044062331	1.20444866827501	0.687256018072226	0.766421482824776	0.549620959058537	0.719113415208169	-2.28654090902614	0.150625278459443	1
Merged-chr18-46599069-4	chr18	46598939	46599139	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010120, intron 2 of 2)	intron (NM_010120, intron 2 of 2)	1335.0	NM_010120	13664.0	Mm.262037	NM_010120	ENSMUSG00000057561	Eif1a	C76390|Ef1a|Eftu|Eif4c|eIF-1A|eIF-4C	eukaryotic translation initiation factor 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-20128308-2	chr13	20128208	20128408	+	997.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	37801.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124825171-1	chr6	124825071	124825271	+	549.0	f1_balb.idr	exon (NM_001326594, exon 3 of 20)	exon (NM_001326594, exon 3 of 20)	4313.0	NM_001326594	22225.0	Mm.3571	NM_013700	ENSMUSG00000038429	Usp5	AA407472|ISOT|ISOT-1|Ucht	ubiquitin specific peptidase 5 (isopeptidase T)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-131321506-3	chr2	131321441	131321641	+	828.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178607, intron 1 of 5)	intron (NM_178607, intron 1 of 5)	31351.0	NM_178607	51902.0	Mm.477523	NM_178607	ENSMUSG00000048911	Rnf24	2810473M14Rik|4930505A13Rik|AI317164|C86507|D2Ertd504e	ring finger protein 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-84614346-2	chr15	84614246	84614446	+	773.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48860.0	NM_001346662	109270.0	Mm.291372	NM_146061	ENSMUSG00000036106	Prr5	AU043908|Arhgap8|C030017C09Rik|C78947|Protor-1|Protor1	proline rich 5 (renal)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-31112422-4	chr8	31112341	31112541	+	869.6083369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175136, intron 1 of 5)	intron (NM_175136, intron 1 of 5)	595.0	NM_175136	68867.0	Mm.29532	NM_175136	ENSMUSG00000039328	Rnf122	1110063C11Rik	ring finger protein 122	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45739547-4	chr7	45739416	45739616	+	856.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360784, intron 1 of 5)	intron (NM_001360784, intron 1 of 5)	2962.0	NM_001360784	54200.0	Mm.271634	NM_017465	ENSMUSG00000003271	Sult2b1	AI326997|BB173635|ST2B1|SULT2B	sulfotransferase family, cytosolic, 2B, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-3825756-1	chr7	3825656	3825856	+	662.333313	f0_c57.idr	intron (NM_001289428, intron 11 of 12)	intron (NM_001289428, intron 11 of 12)	19295.0	NM_011089	18725.0	Mm.482470	NM_011089	ENSMUSG00000089942	Pira2	6M23	paired-Ig-like receptor A2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-100209158-2	chr6	100209058	100209258	+	766.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	78200.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-115511762-3	chr6	115511691	115511891	+	660.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32913.0	NM_199033	381802.0	Mm.291208	NM_199033	ENSMUSG00000042389	Tsen2	AU067695	tRNA splicing endonuclease subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-59268258-4	chr10	59268151	59268351	+	986.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	46329.0	NM_172939	268301.0	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-38291678-3	chr2	38291568	38291768	+	723.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	-4284.0	NM_146122	227801.0	Mm.314245	NM_146122	ENSMUSG00000035392	Dennd1a	6030446I19Rik|connecdenn	DENN/MADD domain containing 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-88087091-4	chr11	88087007	88087207	+	770.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10951.0	NR_045499	70393.0	Mm.386799	NR_045499	ENSMUSG00000018378	2210416O15Rik	-	RIKEN cDNA 2210416O15 gene	ncRNA	-0.121317624485379	-0.643891110762623	-0.646967039087133	-0.649329597100082	-0.395421873333748	-0.643195626712307	-0.474685397844775	-0.648917534453642	-0.553791860823551	0.839891499208565	1
Merged-chr6-31157165-2	chr6	31157065	31157265	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_110471, intron 2 of 3)	intron (NR_110471, intron 2 of 3)	61309.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-27344866-1	chr16	27344766	27344966	+	545.0	f1_c57bl6.idr	intron (NM_198112, intron 3 of 4)	intron (NM_198112, intron 3 of 4)	25373.0	NM_198166	224065.0	Mm.326918	NM_198166	ENSMUSG00000056423	Uts2b	Gm538|U2B|Urp|Uts2d	urotensin 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-70515665-4	chr4	70515585	70515785	+	920.4249880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172694, intron 1 of 5)	intron (NM_172694, intron 1 of 5)	19243.0	NM_172694	230316.0	Mm.251188	NM_172694	ENSMUSG00000039270	Megf9	4933405H16Rik|9630025C07|Egfl5|mKIAA0818	multiple EGF-like-domains 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-72979784-4	chr2	72979680	72979880	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001098425)	promoter-TSS (NM_001098425)	348.0	NR_045269	100503849.0	Mm.389285	NM_183265		Sp3os	1700011J10Rik	trans-acting transcription factor 3, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-34290291-3	chr6	34290193	34290393	+	787.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27150.0	NR_037965	626009.0	Mm.451	NR_028277		Gm6644	Akr1b3p|EG626009	Akr1b3 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45052479-2	chr7	45052379	45052579	+	885.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_175022, intron 1 of 13)	intron (NM_175022, intron 1 of 13)	402.0	NM_175022	233210.0	Mm.219137	NM_175022	ENSMUSG00000046574	Prr12	6720469B10|BC058674	proline rich 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101541297-4	chr7	101541178	101541378	+	878.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14524.0	NM_007490	11871.0	Mm.439746	NM_007490	ENSMUSG00000092517	Art2a-ps	ARTC2|Art2a|Ly92a|Rt-6|Rt6|Rt6-1	ADP-ribosyltransferase 2a, pseudogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-33283257-2	chr2	33283157	33283357	+	626.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290570, intron 4 of 16)	intron (NM_001290570, intron 4 of 16)	67296.0	NM_011923	26360.0	Mm.208919	NM_011923	ENSMUSG00000004105	Angptl2	AI593246|AW260363|Arp2	angiopoietin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-107595192-2	chr3	107595092	107595292	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_007441, exon 1 of 4)	exon (NM_007441, exon 1 of 4)	161.0	NM_007441	11694.0	Mm.10112	NM_007441	ENSMUSG00000014603	Alx3	-	aristaless-like homeobox 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-101843779-3	chr13	101843694	101843894	+	744.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	-75577.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-50499105-4	chr9	50499011	50499211	+	790.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029639, exon 2 of 4)	exon (NM_029639, exon 2 of 4)	4586.0	NM_029639	76509.0	Mm.29959	NM_029639	ENSMUSG00000032068	Plet1	0610037B23Rik|1600029D21Rik|AA407923|AU043048	placenta expressed transcript 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-75823912-3	chr13	75823824	75824024	+	724.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER31A|LTR|ERV1	-15961.0	NM_001360151	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	1.80942813562397	2.02457044624753	1.95723488187639	2.13010080324385	1.82380245374493	2.48851608827608	1.97231301680052	1.21596387843031	-0.0612183305119409	0.951304621084945	0.998431161219273
Merged-chr6-116282800-2	chr6	116282700	116282900	+	613.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290339, intron 2 of 6)	B2_Mm1t|SINE|B2	16268.0	NM_001290339	67492.0	Mm.272772	NM_001081317	ENSMUSG00000042213	Zfand4	Anubl1	zinc finger, AN1-type domain 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-38684662-4	chr5	38684542	38684742	+	987.020874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081144, intron 1 of 3)	CpG	184.0	NM_001177902	100515.0	Mm.38277	NM_001081144	ENSMUSG00000046572	Zfp518b	6820424L24Rik|AA410078|AI661722|Znf518b	zinc finger protein 518B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-23493413-4	chr5	23493314	23493514	+	782.091675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026984, exon 16 of 26)	exon (NM_026984, exon 16 of 26)	58985.0	NM_026984	69188.0	Mm.205190	NM_026984	ENSMUSG00000029004	Kmt2e	1810033J14Rik|9530077A04Rik|D230038D11Rik|Mll5|NKp44L	lysine (K)-specific methyltransferase 2E	protein-coding	0.116052442603615	0.678075655976996	0.12499549018083	0.753657393093554	0.116874783145744	0.455182666404959	0.125967654131613	0.122200897838513	-2.27008255889188	0.308846549832545	1
Merged-chr11-69031214-3	chr11	69031142	69031342	+	885.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001281464, intron 14 of 22)	intron (NM_001281464, intron 14 of 22)	-14395.0	NM_011496	20877.0	Mm.3488	NM_011496	ENSMUSG00000020897	Aurkb	AIM-1|AIRK2|AL022959|Aik2|Aim1|Ark2|AurB|IPL1|STK-1|Stk12|Stk5	aurora kinase B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53009496-2	chr4	53009396	53009596	+	899.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2384.0	NM_001347099	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-32563810-4	chr11	32563701	32563901	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 2 of 18)	intron (NM_009288, intron 2 of 18)	30535.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70587181-4	chr11	70587070	70587270	+	873.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016713, intron 1 of 30)	RMER15|LTR|ERVL	24289.0	NM_016713	50932.0	Mm.42967	NM_016713	ENSMUSG00000020827	Mink1	B55|MINK|Map4k6|Ysk2	misshapen-like kinase 1 (zebrafish)	protein-coding	3.39162186555323	3.67282637895581	3.77861288737896	2.58811735408099	2.1903052198333	1.84273848303384	3.2159651533911	1.42603563968386	-1.87831122797532	0.0172545127213422	0.160896096086008
Merged-chr8-116983215-2	chr8	116983115	116983315	+	851.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026572, intron 4 of 4)	intron (NM_026572, intron 4 of 4)	-4256.0	NM_001357255	69528.0	Mm.272846	NM_027103	ENSMUSG00000031847	1700030J22Rik	-	RIKEN cDNA 1700030J22 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83655527-2	chr6	83655435	83655635	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016751, intron 1 of 6)	intron (NM_016751, intron 1 of 6)	581.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	1.92803016189336	1.51096457874378	1.82397126812222	2.23539040323564	2.22287141759516	1.26846067299975	2.10545506413167	2.41943308941331	0.468059041360298	0.642825719705414	0.982823301118608
Merged-chr4-141810047-1	chr4	141809947	141810147	+	776.0	f1_c57bl6.idr	intron (NM_001277932, intron 6 of 7)	intron (NM_001277932, intron 6 of 7)	15958.0	NM_007919	13706.0	Mm.45316	NM_007919	ENSMUSG00000058579	Cela2a	Ela-2|Ela2|Ela2a	chymotrypsin-like elastase family, member 2A	protein-coding	2.23800028111732	2.16576740385629	0.917029779054332	1.60068066892504	1.39677043622493	1.40699332710654	1.16193611240108	0.903777861913543	-1.9878697600065	0.112391477603609	0.52504564497774
Merged-chr4-43444092-2	chr4	43443992	43444192	+	704.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011571, intron 3 of 9)	intron (NM_011571, intron 3 of 9)	1815.0	NM_011571	21754.0	Mm.485441	NM_011571	ENSMUSG00000028458	Tesk1	AI326901	testis specific protein kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-147336041-2	chr4	147335941	147336141	+	932.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039209, intron 1 of 2)	intron (NM_001039209, intron 1 of 2)	160175.0	NM_001039209	195531.0	Mm.270762	NM_001039209	ENSMUSG00000078496	Zfp982	Gm13152	zinc finger protein 982	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-189701224-3	chr1	189701124	189701324	+	792.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13138.0	NM_001081363	108000.0	Mm.129746	NM_001081363	ENSMUSG00000026605	Cenpf	6530404A22Rik|AI325968|CENF|Lek1|PRO1779|mitosin	centromere protein F	protein-coding	2.84544324322264	2.56057783642052	3.53781145094913	2.40004402159342	3.01048407947138	2.71255500925865	1.49292282873698	2.27307899525166	-0.796939448509025	0.328146220825704	0.830597486712967
Merged-chr14-37135913-2	chr14	37135813	37136013	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199122)	promoter-TSS (NM_001199122)	-591.0	NM_078478	66092.0	Mm.182912	NM_078478	ENSMUSG00000041028	Ghitm	1010001P14Rik|C77840|MICS1|PTD010|Tmbim5	growth hormone inducible transmembrane protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-75000574-4	chr18	75000467	75000667	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028552).2	promoter-TSS (NR_028552).2	90.0	NM_001002239	319195.0	Mm.276337	NM_001002239	ENSMUSG00000062328	Rpl17	-	ribosomal protein L17	protein-coding	5.43261108300277	5.52412070814037	5.50956691837379	4.96393400218037	5.55507083013542	4.84573605981795	6.32117405403949	4.60253646321425	0.146918226604906	0.68890852130567	0.996533206832645
Merged-chr10-62582824-3	chr10	62582744	62582944	+	906.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019553, intron 14 of 14)	intron (NM_019553, intron 14 of 14)	-4387.0	NM_028197	72320.0	Mm.258955	NM_028197	ENSMUSG00000036955	Kif1bp	0710007C18Rik|2510003E04Rik|KBP|mKIAA1279	KIF1 binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69692366-4	chr11	69692272	69692472	+	996.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011614, intron 5 of 6)	L2|LINE|L2	3726.0	NM_011614	21944.0	Mm.8983	NM_011614	ENSMUSG00000097328	Tnfsf12	Apo3l|Dr3l|Dr3lg|Tweak	tumor necrosis factor (ligand) superfamily, member 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-48110113-4	chr8	48110031	48110231	+	872.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_027759, exon 1 of 6)	non-coding (NR_027759, exon 1 of 6)	118.0	NM_001161515	320685.0	Mm.121549	NM_178788	ENSMUSG00000031562	Dctd	6030466N05Rik	dCMP deaminase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-10822760-3	chr17	10822660	10822860	+	710.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027032, intron 1 of 4)	intron (NM_027032, intron 1 of 4)	17431.0	NM_027032	69310.0	Mm.18889	NM_027032	ENSMUSG00000037196	Pacrg	1700008H23Rik	PARK2 co-regulated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-74911075-3	chr18	74910974	74911174	+	572.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4|LINE|L1	50189.0	NM_010720	16891.0	Mm.299647	NM_010720	ENSMUSG00000053846	Lipg	3110013K01Rik|EL|lipase|mEDL	lipase, endothelial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-14358727-4	chr16	14358611	14358811	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2847.0	NM_008576	17250.0	Mm.196634	NM_008576	ENSMUSG00000023088	Abcc1	Abcc1a|Abcc1b|MRP|Mdrap|Mrp1	ATP-binding cassette, sub-family C (CFTR/MRP), member 1	protein-coding	-0.254185847351957	-0.224897803630848	-0.234233847305391	-0.241604535334932	-0.25228580781419	0.260239799365714	1.2753585275974	-0.240305980764543	4.40818479622762	0.0474559112828017	1
Merged-chr14-62838576-4	chr14	62838476	62838676	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_106174)	TTS (NR_106174)	855.0	NR_106174	102465889.0		NR_106174	ENSMUSG00000099245	Mir8098	Gm27462|mmu-mir-8098	microRNA 8098	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-44016386-4	chr16	44016286	44016486	+	958.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153528)	promoter-TSS (NM_153528)	50.0	NM_153528	207798.0	Mm.19316	NM_153528	ENSMUSG00000036292	Gramd1c	4921521N14Rik	GRAM domain containing 1C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-34206363-4	chr19	34206257	34206457	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360718, intron 1 of 10)	intron (NM_001360718, intron 1 of 10)	-11151.0	NM_001360719	76630.0	Mm.130952	NM_029682	ENSMUSG00000024776	Stambpl1	1700095N21Rik|8230401J17Rik|ALMalpha|AMSH-FP	STAM binding protein like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-39530422-4	chr1	39530310	39530510	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-5291.0	NM_028043	52846.0	Mm.259421	NM_028043	ENSMUSG00000003135	Cnot11	2410015L18Rik|C40|D1Bwg0212e	CCR4-NOT transcription complex, subunit 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-4232510-2	chr12	4232410	4232610	+	696.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134046, intron 2 of 6)	intron (NM_134046, intron 2 of 6)	1455.0	NM_134046	52504.0	Mm.70546	NM_134046	ENSMUSG00000020652	Cenpo	2810429O05Rik|8430427C03Rik|D12Ertd482e	centromere protein O	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-51678947-4	chr12	51678844	51679044	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001172098, intron 1 of 15)	RSINE1|SINE|B4	-12022.0	NM_001329699	11782.0	Mm.386749	NM_021710	ENSMUSG00000020955	Ap4s1	AI314282	adaptor-related protein complex AP-4, sigma 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-120480000-2	chr14	120479900	120480100	+	569.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029519, intron 1 of 1)	intron (NM_029519, intron 1 of 1)	1539.0	NM_029519	76108.0	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-99273223-1	chr10	99273123	99273323	+	850.0	f0_balb.idr	Intergenic	MLT1G1|LTR|ERVL-MaLR	9992.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-96639264-2	chr15	96639164	96639364	+	711.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166458, intron 1 of 15)	MIRb|SINE|MIR	2698.0	NM_134086	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-35056807-4	chr9	35056694	35056894	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009178, intron 1 of 10)	intron (NM_009178, intron 1 of 10)	-59934.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-27096492-4	chr14	27096382	27096582	+	873.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134437, intron 11 of 12)	intron (NM_134437, intron 11 of 12)	-47511.0	NM_001289686	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-40273502-4	chr12	40273411	40273611	+	971.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50147.0	NR_045157	629820.0	Mm.435540	NR_045157	ENSMUSG00000035983	Gm7008	EG629820	predicted gene 7008	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-127204272-2	chr1	127204172	127204372	+	705.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145128)	promoter-TSS (NM_145128)	-714.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-78009364-4	chr10	78009273	78009473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358793, intron 1 of 21)	CpG	434.0	NM_008826	18641.0	Mm.269649	NM_008826	ENSMUSG00000020277	Pfkl	AA407869|ATP-PFK|PFK-B|PFK-L	phosphofructokinase, liver, B-type	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-59688952-3	chr2	59688797	59688997	+	889.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290659, intron 1 of 25)	intron (NM_001290659, intron 1 of 25)	42128.0	NM_001290659	66860.0	Mm.27917	NM_198294	ENSMUSG00000035168	Tanc1	1200003E16Rik|Tanc|mKIAA1728	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-56345878-4	chr12	56345772	56345972	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145442)	promoter-TSS (NM_145442)	22.0	NM_145442	217588.0	Mm.25656	NM_145442	ENSMUSG00000021028	Mbip	4933408E06Rik	MAP3K12 binding inhibitory protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43038031-2	chr4	43037931	43038131	+	910.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NR_045567, intron 1 of 7)	intron (NR_045567, intron 1 of 7)	2270.0	NM_001253353	230088.0	Mm.260162	NM_172691	ENSMUSG00000036002	Fam214b	B230312A22Rik	family with sequence similarity 214, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-50828992-2	chr1	50828892	50829092	+	681.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-98531.0	NM_019790	56363.0	Mm.245154	NM_019790	ENSMUSG00000026109	Tmeff2	4832418D20Rik|7630402F16Rik|TR-2	transmembrane protein with EGF-like and two follistatin-like domains 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67713247-4	chr10	67713144	67713344	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-141285.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120275265-1	chr11	120275165	120275365	+	577.0	f1_c57bl6.idr	intron (NM_198423, intron 10 of 27)	intron (NM_198423, intron 10 of 27)	42318.0	NM_198423	268515.0	Mm.309498	NM_198423	ENSMUSG00000039741	Bahcc1	B930044J06|BC060615	BAH domain and coiled-coil containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-32179670-4	chr16	32179548	32179748	+	647.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033539)	promoter-TSS (NM_001033539)	-152.0	NM_001033539	328660.0	Mm.441006	NM_001033539	ENSMUSG00000075269	Bex6	B020003O03Rik	brain expressed family member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-72837558-3	chr15	72837438	72837638	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164641, intron 17 of 17)	intron (NM_001164641, intron 17 of 17)	-27214.0	NR_002864	353342.0	Mm.440245	NR_002864	ENSMUSG00000106847	Peg13	-	paternally expressed 13	ncRNA	-1.58994551673671	-1.55912852307891	-1.56844783632235	-1.57610299769523	-1.18549093183599	-1.55710898902261	-1.56633814807757	-1.57473272746952	1.78703309985663	0.610309988231842	1
Merged-chr2-59129673-2	chr2	59129573	59129773	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001362394, intron 1 of 13)	intron (NM_001362394, intron 1 of 13)	31010.0	NM_001362393	227933.0	Mm.330234	NM_177650	ENSMUSG00000036641	Ccdc148	5830402J09|Gm38473	coiled-coil domain containing 148	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-11016750-3	chr8	11016650	11016850	+	756.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_046017, intron 1 of 4)	PB1D10|SINE|Alu	-8320.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191131910-4	chr1	191131813	191132013	+	835.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32904.0	NM_001109759	619288.0	Mm.61148	NM_001109759	ENSMUSG00000091017	Fam71a	4933417M04Rik|GARI-L4	family with sequence similarity 71, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-40331845-1	chr18	40331745	40331945	+	541.0	f1_balb.idr	intron (NM_026135, intron 1 of 1)	intron (NM_026135, intron 1 of 1)	73484.0	NM_026135	383348.0	Mm.76366	NM_026135	ENSMUSG00000051401	Kctd16	4930434H12Rik|Gm1267	potassium channel tetramerisation domain containing 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-79606550-1	chr11	79606450	79606650	+	1000.0	f1_c57bl6.idr	TTS (NR_003283)	TTS (NR_003283)	15338.0	NM_175543	268451.0	Mm.130656	NM_175543	ENSMUSG00000017639	Rab11fip4	A730072L08Rik|RAB11-FIP4|mKIAA1821	RAB11 family interacting protein 4 (class II)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-157428598-4	chr2	157428504	157428704	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025395, intron 1 of 13)	intron (NM_001025395, intron 1 of 13)	4311.0	NM_001025395	20779.0	Mm.22845	NM_009271	ENSMUSG00000027646	Src	AW259666|pp60c-src	Rous sarcoma oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124027417-2	chr5	124027332	124027532	+	655.0	f0_c57.idr|f1_balb.idr	intron (NM_177876, intron 1 of 3)	intron (NM_177876, intron 1 of 3)	4828.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	-1.31349849087795	-1.28274354783242	-1.29349452597086	-1.3023256995151	-1.3130151546297	-1.28041376602105	-0.694015972326031	-1.30074492367298	2.57396649482007	0.456321314346772	1
Merged-chr14-76780776-1	chr14	76780676	76780876	+	713.333313	f0_c57.idr	Intergenic	Intergenic	20645.0	NR_153763	73883.0	Mm.489041	NR_153763		4930431P22Rik	-	RIKEN cDNA 4930431P22 gene	ncRNA	1.30730272562073	1.30028929075206	0.828836561624975	1.39657886929835	0.91506158296931	0.650487276381743	0.834682077368308	0.631723011953444	-2.51743346029826	0.100031095626587	0.491874215298275
Merged-chr6-124824022-2	chr6	124823922	124824122	+	645.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013700, intron 6 of 19)	intron (NM_013700, intron 6 of 19)	5462.0	NM_001326594	22225.0	Mm.3571	NM_013700	ENSMUSG00000038429	Usp5	AA407472|ISOT|ISOT-1|Ucht	ubiquitin specific peptidase 5 (isopeptidase T)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-32170402-2	chr19	32170302	32170502	+	790.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 5 of 9)	intron (NM_144792, intron 5 of 9)	40611.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-57116255-2	chr16	57116156	57116356	+	687.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	-5458.0	NM_138599	28185.0	Mm.196933	NM_138599	ENSMUSG00000022752	Tomm70a	2610044B22Rik|D16Ium22|D16Ium22e|D16Wsu109e|Tom70|Tomm70|mKIAA0719	translocase of outer mitochondrial membrane 70A	protein-coding	0.508528889401138	0.260639218074029	0.822920859239535	0.249082932459759	0.241962101598988	0.262108616807087	0.719463699141481	0.886841582301308	0.480630530242312	0.804141874334712	1
Merged-chr5-105562791-2	chr5	105562691	105562891	+	637.533325	f1_balb.idr|f1_c57bl6.idr	intron (NM_133897, intron 2 of 3)	L1_Mus4|LINE|L1	43320.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46485857-2	chr19	46485757	46485957	+	577.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_015752, exon 12 of 12)	exon (NM_015752, exon 12 of 12)	-15791.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-8668475-2	chr16	8668375	8668575	+	699.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025821, intron 1 of 3)	intron (NM_025821, intron 1 of 3)	3678.0	NM_025821	52502.0	Mm.142095	NM_025821	ENSMUSG00000008393	Carhsp1	1200011K09Rik|Crhsp-24|D16Ertd465e	calcium regulated heat stable protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-8766234-4	chr10	8766183	8766383	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 8 of 19)	intron (NM_175155, intron 8 of 19)	119787.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	2.51922634745338	2.70688882876921	4.65424984446642	2.93529232563116	3.5450125323356	3.03476229814538	3.69899019520052	3.8422157029931	0.0348613174353627	0.958273054299615	0.998431161219273
Merged-chr16-87654395-4	chr16	87654310	87654510	+	965.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44544.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-59164851-2	chr11	59164751	59164951	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-1106.0	NM_173785	216792.0	Mm.266175	NM_173785	ENSMUSG00000049287	Iba57	4930543L23Rik|A230051G13Rik|C1orf69	IBA57 homolog, iron-sulfur cluster assembly	protein-coding	0.928168966680714	1.08241042955742	1.46300164947845	0.507574033978569	1.32184506090396	0.529111209375754	0.518349684046827	0.509047208906103	-1.15650848282551	0.498908471110465	0.937388734723802
Merged-chr11-114959220-2	chr11	114959120	114959320	+	857.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_199225, intron 2 of 3)	RSINE1|SINE|B4	1197.0	NM_199225	387565.0	Mm.351450	NM_199225	ENSMUSG00000058728	Cd300c	Clm6	CD300C molecule	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-102588514-1	chr4	102588414	102588614	+	679.0	f0_balb.idr	intron (NM_001177982, intron 1 of 9)	intron (NM_001177982, intron 1 of 9)	956.0	NM_001177982	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-33130722-1	chr2	33130622	33130822	+	1000.0	f0_balb.idr	promoter-TSS (NM_001355200)	promoter-TSS (NM_001355200)	-103.0	NM_001355200	99326.0	Mm.41290	NM_178888	ENSMUSG00000038860	Garnl3	AW120551	GTPase activating RANGAP domain-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-40714070-3	chr11	40713970	40714170	+	970.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013552, exon 11 of 18)	exon (NM_013552, exon 11 of 18)	-18867.0	NM_001199274	108645.0	Mm.293771	NM_134017	ENSMUSG00000042032	Mat2b	1110064C04Rik|2410018D16Rik|AI182287|AU022853|MAT-II|MATIIbeta|TGR	methionine adenosyltransferase II, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-73763602-4	chr13	73763486	73763686	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011390)	promoter-TSS (NM_011390)	-74.0	NM_001360694	20499.0	Mm.275800	NM_011390	ENSMUSG00000017756	Slc12a7	AA408796|D13Ertd261e|Kcc4	solute carrier family 12, member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-146947777-3	chr5	146947795	146947995	+	789.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025652)	promoter-TSS (NM_025652)	-762.0	NM_025652	66596.0	Mm.196528	NM_025652	ENSMUSG00000016503	Gtf3a	2010015D03Rik|2610111I01Rik|5330403M05Rik	general transcription factor III A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-138967548-4	chr1	138967386	138967586	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181347)	promoter-TSS (NM_181347)	-235.0	NM_181347	329260.0	Mm.337604	NM_181347	ENSMUSG00000056268	Dennd1b	4632404N19Rik|4930467M19Rik|6820401H01Rik|F730008N07Rik	DENN/MADD domain containing 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70091692-2	chr11	70091592	70091792	+	754.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001313926)	promoter-TSS (NM_001313926)	-952.0	NM_007493	11890.0	Mm.1357	NM_007493	ENSMUSG00000040963	Asgr2	ASGPR2|Asgr|Asgr-2|HL-2	asialoglycoprotein receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76307410-4	chr15	76307309	76307509	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153122)	promoter-TSS (NM_153122)	-164.0	NM_153122	75475.0	Mm.322738	NM_153122	ENSMUSG00000022562	Oplah	1700010G02Rik	5-oxoprolinase (ATP-hydrolysing)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-150611835-4	chr5	150611728	150611928	+	822.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362416, intron 6 of 7)	L3|LINE|CR1	-17303.0	NM_133898	100637.0	Mm.279932	NM_133898	ENSMUSG00000041132	N4bp2l1	2410024N18Rik|AI428195|B230342M21Rik	NEDD4 binding protein 2-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-130805235-2	chr4	130805135	130805335	+	780.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011520, intron 1 of 4)	intron (NM_011520, intron 1 of 4)	12698.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70675265-1	chr11	70675165	70675365	+	761.75	f0_balb.idr	intron (NM_001190379, intron 12 of 20)	intron (NM_001190379, intron 12 of 20)	-5849.0	NM_001167669	216873.0	Mm.432524	NM_172561	ENSMUSG00000018287	Spag7	5730443G10|ACRP|FSA-1|Fsa1l	sperm associated antigen 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-78348852-2	chr11	78348752	78348952	+	758.799988	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011676, exon 5 of 5)	3' UTR (NM_011676, exon 5 of 5)	2142.0	NM_001313987	22248.0	Mm.284811	NM_011676	ENSMUSG00000002058	Unc119	D11Bhm52|HRG4|MRG4|Rg4|Rtg4|Unc119h	unc-119 lipid binding chaperone	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-32241043-2	chr18	32240943	32241143	+	794.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133658, intron 2 of 14)	intron (NM_133658, intron 2 of 14)	712.0	NM_133658	13872.0	Mm.282335	NM_133658	ENSMUSG00000024382	Ercc3	BTF2 p89|Ercc-3|XPB	excision repair cross-complementing rodent repair deficiency, complementation group 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80700294-2	chr10	80700194	80700394	+	898.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_172457, intron 1 of 3)	intron (NM_172457, intron 1 of 3)	1526.0	NM_172457	208228.0	Mm.49309	NM_172457	ENSMUSG00000003348	Mob3a	5330417K06Rik|A630029F06|AV218468|Mobkl2a	MOB kinase activator 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-35421456-4	chr9	35421363	35421563	+	980.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-30613.0	NM_021339	57810.0	Mm.80509	NM_021339	ENSMUSG00000038119	Cdon	CDO|Cd0|Orcam	cell adhesion molecule-related/down-regulated by oncogenes	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-116172655-4	chr6	116172538	116172738	+	848.287476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177412, intron 1 of 5)	L1VL4|LINE|L1	20736.0	NM_177412	330401.0	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-143551220-2	chr5	143551120	143551320	+	597.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133703, intron 1 of 1)	intron (NM_133703, intron 1 of 1)	2514.0	NM_026050	67238.0	Mm.383219	NM_026050	ENSMUSG00000083012	Fam220a	1500026F15Rik|2810453I06Rik|AW047776|Acpin1|Sipar	family with sequence similarity 220, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-30609502-4	chr14	30609410	30609610	+	813.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011103, intron 2 of 17)	intron (NM_011103, intron 2 of 17)	800.0	NM_001310682	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-87683045-4	chr4	87682932	87683132	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	123291.0	NM_001286158	70122.0	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-46028167-4	chr9	46028070	46028270	+	792.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027498, intron 1 of 24)	intron (NM_027498, intron 1 of 24)	15350.0	NM_027498	70661.0	Mm.219459	NM_027498	ENSMUSG00000034135	Sik3	5730525O22Rik|9030204A07Rik|AI447252|AI846254|AI849445|Qsk|SIK-3|mKIAA0999	SIK family kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-11708630-4	chr2	11708545	11708745	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271499, intron 1 of 6)	intron (NM_001271499, intron 1 of 6)	2933.0	NM_001271500	16169.0	Mm.200196	NM_008358	ENSMUSG00000023206	Il15ra	AA690181|IL-15RA	interleukin 15 receptor, alpha chain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-37094312-3	chr9	37094226	37094426	+	923.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029838, intron 1 of 12)	intron (NM_001029838, intron 1 of 12)	52996.0	NM_148950	208076.0	Mm.260335	NM_148950	ENSMUSG00000035934	Pknox2	D230005H23Rik|Prep2	Pbx/knotted 1 homeobox 2	protein-coding	1.22949058208355	0.810822524537002	0.795644607517196	0.783703797292489	1.24055121826622	1.67508360860546	1.81141405218083	1.65248570333661	3.04055833313754	0.0354425198600292	0.266440697544255
Merged-chr4-89524820-4	chr4	89524719	89524919	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-163379.0	NM_175647	242523.0	Mm.130167	NM_175647	ENSMUSG00000043753	Dmrta1	Dmrt4	doublesex and mab-3 related transcription factor like family A1	protein-coding	2.8082990665203	1.87143001179547	1.35786082440952	2.42218102192946	2.10963746578062	2.70051741319733	2.28600434629891	2.21579913508047	0.217005970856268	0.81393085267203	0.998431161219273
Merged-chr1-171412256-4	chr1	171412159	171412359	+	933.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009480, intron 1 of 9)	intron (NM_009480, intron 1 of 9)	578.0	NM_009480	22278.0	Mm.8	NM_009480	ENSMUSG00000026641	Usf1	bHLHb11	upstream transcription factor 1	protein-coding	3.27301105451528	3.84085593301178	4.20890830598886	3.05726985500894	3.52794301182483	3.86820181628107	4.01579486716839	4.01442991082549	0.288178150735035	0.57442669916071	0.96490174582745
Merged-chr10-39240039-3	chr10	39239932	39240132	+	775.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-76238.0	NM_001127376	327743.0	Mm.208111	NM_001127376	ENSMUSG00000062074	Wisp3	CCN6|Gm735|WISP-3	WNT1 inducible signaling pathway protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-8560168-1	chr1	8560068	8560268	+	720.0	f1_c57bl6.idr	intron (NM_027671, intron 14 of 20)	RMER17D2|LTR|ERVK	739709.0	NM_001290393	71096.0	Mm.336395	NM_027671	ENSMUSG00000025909	Sntg1	4933426D16Rik|G1SYN|SYN4	syntrophin, gamma 1	protein-coding	-0.734697168562934	-1.28094420828655	-1.29131886204401	-1.29984091153697	-1.31008363841169	-1.2786959775384	-1.28897026783925	-1.29831546875223	-2.42902550944018	0.482518537989684	1
Merged-chr2-119801213-2	chr2	119801085	119801285	+	648.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019392, intron 1 of 18)	intron (NM_019392, intron 1 of 18)	1671.0	NM_019392	22174.0	Mm.2901	NM_019392	ENSMUSG00000027298	Tyro3	AI323366|Brt|Dtk|Etk-2|Rse|Sky|TK19-2|Tif|etk2/tyro3|tk19-1	TYRO3 protein tyrosine kinase 3	protein-coding	0.785320883989868	1.68589864498703	1.21621188292209	1.18118994253793	0.974231373628244	2.00453917590637	1.22607175491538	1.1873706425481	0.573729276519123	0.65596724935475	0.988505467120973
Merged-chr3-105721991-4	chr3	105721909	105722109	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16551.0	NM_001163356	109050.0	Mm.212591	NM_175398	ENSMUSG00000048458	Fam212b	6530418L21Rik|inka2	family with sequence similarity 212, member B	protein-coding	5.12790506612561	5.27507635146602	4.79187246918946	5.93309389232856	5.29388260992877	5.57351225440786	4.39731914804517	5.5418569446656	-0.0866351817496182	0.80568801969161	0.998431161219273
Merged-chr10-81363705-2	chr10	81363605	81363805	+	837.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001014836)	TTS (NM_001014836)	2115.0	NM_001014836	432479.0	Mm.440450	NM_001014836	ENSMUSG00000020234	4930404N11Rik	2210409H10Rik|5730551K18Rik|AI854616	RIKEN cDNA 4930404N11 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84422287-1	chr8	84422187	84422387	+	687.0	f1_c57bl6.idr	intron (NM_001252060, intron 1 of 47)	intron (NM_001252060, intron 1 of 47)	6923.0	NM_001252061	12286.0	Mm.334658	NM_007578	ENSMUSG00000034656	Cacna1a	APCA|BI|Caca1a|Cacnl1a4|Cav2.1|Ccha1a|EA2|FHM|HPCA|MHP|MHP1|SCA6|alpha1A|la|nmf352|rkr|smrl|tg	calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	protein-coding	-0.568320929978658	-0.550063761583548	-0.335508323208755	-0.560556996801154	-0.567156188171902	0.624922004037285	-0.554646593661524	-0.559748817835372	3.02012915172168	0.243032132730816	1
Merged-chr2-93482823-2	chr2	93482723	93482923	+	564.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR33A|LTR|ERVL	-19873.0	NM_001136055	12521.0	Mm.4261	NM_007656	ENSMUSG00000027215	Cd82	AA682076|AL023070|C33|IA4|Kai1|Tspan27	CD82 antigen	protein-coding	-0.795218462421333	-0.786702701571504	-0.789507392341686	-0.502555603591819	-0.794690867926269	-0.785168048256646	-0.616721856988752	-0.381119191870461	0.99654806174282	0.72648786820168	1
Merged-chr2-154549764-4	chr2	154549667	154549867	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029305, exon 3 of 3)	exon (NM_029305, exon 3 of 3)	863.0	NM_029305	75480.0	Mm.440434	NM_029305	ENSMUSG00000038523	1700003F12Rik	-	RIKEN cDNA 1700003F12 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-120661953-4	chr2	120661848	120662048	+	946.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	52353.0	NM_001290807	66296.0	Mm.221900	NM_025475	ENSMUSG00000027285	Haus2	1700101G24Rik|2410007P03Rik|AU020217|Cep27	HAUS augmin-like complex, subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-36951531-2	chr4	36951431	36951631	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001165999, exon 1 of 8)	5' UTR (NM_001165999, exon 1 of 8)	213.0	NM_001165999	242384.0	Mm.132507	NM_175516	ENSMUSG00000045083	Lingo2	B230217C06Rik|Lern3|Lrrn6c	leucine rich repeat and Ig domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-37870654-4	chr6	37870552	37870752	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001272064)	promoter-TSS (NM_001272064)	-159.0	NM_001272064	21848.0	Mm.41063	NM_145076	ENSMUSG00000029833	Trim24	A130082H20Rik|AI447469|D430004I05Rik|TIF1|TIF1-alpha|TIF1alpha|Tif1a	tripartite motif-containing 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59723232-2	chr15	59723132	59723332	+	752.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	71727.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-29289418-2	chr5	29289318	29289518	+	720.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_020295, intron 8 of 16)	intron (NM_020295, intron 8 of 16)	88972.0	NM_020295	56873.0	Mm.41572	NM_020295	ENSMUSG00000010721	Lmbr1	1110048D14Rik|AU017641	limb region 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25764779-2	chr7	25764679	25764879	+	575.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009465, intron 14 of 19)	intron (NM_009465, intron 14 of 19)	-10020.0	NM_178089	232989.0	Mm.254223	NM_144922	ENSMUSG00000040725	Hnrnpul1	E130317O14Rik|E1B-AP5|E1BAP5|Hnrnpul|Hnrpul1	heterogeneous nuclear ribonucleoprotein U-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-156439809-2	chr1	156439709	156439909	+	582.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009230, intron 8 of 15)	intron (NM_009230, intron 8 of 15)	-18894.0	NM_001346967	77352.0	Mm.428709	NM_001033180	ENSMUSG00000026601	Axdnd1	9430070O13Rik|Gm979	axonemal dynein light chain domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-134244913-1	chr4	134244813	134245013	+	707.0	f1_c57bl6.idr	non-coding (NR_040435, exon 4 of 5)	non-coding (NR_040435, exon 4 of 5)	678.0	NM_024215	68040.0	Mm.300404	NM_024215	ENSMUSG00000028840	Zfp593	3110024A21Rik|AV062409|E130106C14Rik|ZNF593	zinc finger protein 593	protein-coding	0.0918611730766579	0.114177756034179	0.106927954319485	0.567050467212944	0.0932711075027721	1.00909104532035	0.108531889670729	0.690011382597423	1.94921076833598	0.359931152795767	1
Merged-chr1-87207484-2	chr1	87207384	87207584	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_009604, exon 5 of 12)	exon (NM_009604, exon 5 of 12)	1673.0	NM_009604	11449.0	Mm.2810	NM_009604	ENSMUSG00000026253	Chrng	Achr-3|Acrg	cholinergic receptor, nicotinic, gamma polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19223092-2	chr7	19222992	19223192	+	739.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_175668, exon 2 of 2)	exon (NM_175668, exon 2 of 2)	-5297.0	NM_207525	403187.0	Mm.239583	NM_207525	ENSMUSG00000052214	Opa3	D630048P19Rik|Gm1425|Gm472	optic atrophy 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-92402339-2	chr16	92402239	92402439	+	701.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081549, intron 1 of 3)	intron (NM_001081549, intron 1 of 3)	-2261.0	NM_019466	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-75093249-1	chr8	75093149	75093349	+	701.0	f1_balb.idr	promoter-TSS (NM_010442)	promoter-TSS (NM_010442)	-369.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	1.19228020974955	0.610379822966606	0.600278531730014	1.45186330733337	0.743057466085066	1.15257030383342	0.602513792404091	1.17994871124074	-0.374359512983711	0.8136412166764	0.998431161219273
Merged-chr18-83817614-4	chr18	83817497	83817697	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	268965.0	NM_001081300	110796.0	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115159643-2	chr11	115159543	115159743	+	862.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_021411, intron 5 of 8)	intron (NM_021411, intron 5 of 8)	-3698.0	NM_012030	26941.0	Mm.27842	NM_012030	ENSMUSG00000020733	Slc9a3r1	EBP-50|NHE-RF|NHERF-1|NHERF1	solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-56876289-2	chr10	56876189	56876389	+	686.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	444308.0	NR_152768	102640560.0	Mm.417249	NR_152768		Gm36595	-	predicted gene, 36595	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-18210874-2	chr10	18210762	18210962	+	644.875	f0_balb.idr|f1_balb.idr	promoter-TSS (NM_001195036)	promoter-TSS (NM_001195036)	28.0	NM_001195036	100045792.0	Mm.380617	NM_001195036	ENSMUSG00000071392	Ect2l	C330021H03Rik|Gm10331	epithelial cell transforming sequence 2 oncogene-like	protein-coding	0.442521505226533	0.0246819241821792	0.318139992624714	0.0167538403814183	0.0119169913685157	0.205527939512497	0.185621504250089	0.411335764393672	-0.0476359503960145	0.981158675523276	1
Merged-chr3-88494903-2	chr3	88494803	88495003	+	628.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001002011, intron 1 of 11)	intron (NM_001002011, intron 1 of 11)	-1591.0	NM_019390	16905.0	Mm.243014	NM_019390	ENSMUSG00000028063	Lmna	Dhe	lamin A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-37029375-4	chr1	37029317	37029517	+	849.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-89890.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-25403506-2	chr14	25403406	25403606	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55679.0	NM_001310666	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127119286-4	chr7	127119177	127119377	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133686, intron 1 of 3)	intron (NM_133686, intron 1 of 3)	2752.0	NM_133686	67375.0	Mm.26928	NM_133686	ENSMUSG00000030674	Qprt	2410027J01Rik|AI647766|QPRTase	quinolinate phosphoribosyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-65515830-2	chr11	65515695	65515895	+	861.083374	f0_balb.idr|f1_balb.idr	Intergenic	L1MA4|LINE|L1	219037.0	NR_030417	791070.0		NR_030417	ENSMUSG00000076460	Mir744	Mirn744|mir-744|mmu-mir-744	microRNA 744	ncRNA	2.63709593496032	2.06088450062271	1.75191749730565	2.11610180295011	3.38301944824694	2.89005144710356	2.66589115904362	4.10032367657936	2.20525350473926	0.0036289770736946	0.0520818982418514
Merged-chr10-120209596-6	chr10	120209531	120209731	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026617, intron 1 of 6)	L1MB2|LINE|L1	805.0	NM_026617	68212.0	Mm.157426	NM_026617	ENSMUSG00000020225	Tmbim4	0610007H07Rik|AU022431	transmembrane BAX inhibitor motif containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-115163117-4	chr13	115163001	115163201	+	967.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61137.0	NM_001033228	109700.0	Mm.317280	NM_001033228	ENSMUSG00000042284	Itga1	CD49A|E130012M19Rik|Vla1	integrin alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-13585015-2	chr8	13584915	13585115	+	589.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_009025, exon 14 of 24)	exon (NM_009025, exon 14 of 24)	-22554.0	NM_001080781	66501.0	Mm.46136	NM_025601	ENSMUSG00000031452	1700029H14Rik	-	RIKEN cDNA 1700029H14 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-59506664-1	chr11	59506564	59506764	+	1000.0	f0_balb.idr	promoter-TSS (NM_001130529)	promoter-TSS (NM_001130529)	-24.0	NM_172941	268417.0	Mm.239793	NM_172941	ENSMUSG00000020472	Zkscan17	Nizp1|Zfp496|Znf496	zinc finger with KRAB and SCAN domains 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84169211-2	chr8	84169116	84169316	+	773.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029045, intron 6 of 8)	intron (NM_029045, intron 6 of 8)	7336.0	NM_194059	244551.0	Mm.216740	NM_194059	ENSMUSG00000056155	Nanos3	nos3	nanos C2HC-type zinc finger 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-111383876-4	chr7	111383780	111383980	+	979.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-261205.0	NR_015573	75479.0	Mm.381620	NR_015573	ENSMUSG00000110424	1700012D14Rik	-	RIKEN cDNA 1700012D14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-6452287-2	chr2	6452187	6452387	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	99551.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26850324-2	chr17	26850224	26850424	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-8759.0	NM_008700	18091.0	Mm.41974	NM_008700	ENSMUSG00000015579	Nkx2-5	Csx|Nkx-2.5|Nkx2.5|tinman	NK2 homeobox 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-60733092-3	chr14	60732997	60733197	+	890.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001310594, exon 1 of 10)	5' UTR (NM_001310594, exon 1 of 10)	193.0	NM_001310594	219140.0	Mm.149776	NM_001033272	ENSMUSG00000021990	Spata13	C79050|ESTM11|X83327|mFLJ00298	spermatogenesis associated 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115342383-2	chr5	115342283	115342483	+	653.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026933, intron 1 of 1)	intron (NM_026933, intron 1 of 1)	1136.0	NM_026933	69076.0	Mm.27951	NM_026933	ENSMUSG00000029535	Triap1	1810015M01Rik|AU020874|AU043831|P53csv|Wf-1	TP53 regulated inhibitor of apoptosis 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-29993104-4	chr16	29992925	29993125	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-13901.0	NR_037689	328657.0	Mm.425982	NM_001033403		Gm1968	-	predicted gene 1968	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-66635263-2	chr14	66635253	66635453	+	743.099976	f0_balb.idr|f1_balb.idr	5' UTR (NM_001271761, exon 1 of 3)	5' UTR (NM_001271761, exon 1 of 3)	102.0	NM_001271760	11549.0	Mm.57064	NM_013461	ENSMUSG00000045875	Adra1a	Adra1c	adrenergic receptor, alpha 1a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-98685502-2	chr15	98685402	98685602	+	831.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER4B|LTR|ERVK	-8041.0	NM_172612	223881.0	Mm.274010	NM_172612	ENSMUSG00000054855	Rnd1	A830014L09Rik|Arhs	Rho family GTPase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-90864057-1	chr6	90863957	90864157	+	573.0	f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-53934.0	NM_001134384	232227.0	Mm.196943	NM_182784	ENSMUSG00000034312	Iqsec1	AW561907|BC026481|BRAG2|D6Ertd349e|cI-43	IQ motif and Sec7 domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-56050934-2	chr7	56050834	56051034	+	827.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_010418, exon 2 of 93)	exon (NM_010418, exon 2 of 93)	545.0	NM_001360080	15204.0	Mm.20929	NM_010418	ENSMUSG00000030451	Herc2	D15F32S1h|D7H15F32S1|D7H15F37S1|jdf2|mKIAA0393|rjs	HECT and RLD domain containing E3 ubiquitin protein ligase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-88485745-2	chr15	88485645	88485845	+	575.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-114557.0	NM_027306	70073.0	Mm.45306	NM_027306	ENSMUSG00000054117	Zdhhc25	1700030J15Rik	zinc finger, DHHC domain containing 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88476620-4	chr3	88476501	88476701	+	808.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15419.0	NM_001163489	20351.0	Mm.439752	NM_013658	ENSMUSG00000028064	Sema4a	AI132332|SemB|Semab	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-65071471-2	chr18	65071371	65071571	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_031881, intron 1 of 29)	intron (NM_031881, intron 1 of 29)	47944.0	NM_031881	83814.0	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-18235615-3	chr16	18235501	18235701	+	846.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172151)	promoter-TSS (NM_172151)	-465.0	NM_172151	27801.0	Mm.326263	NM_172151	ENSMUSG00000060166	Zdhhc8	D16H22S1738E|DHHC-8|E330009O14Rik|Op53c05|ZDHHCL1	zinc finger, DHHC domain containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-24651232-4	chr12	24651133	24651333	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178357)	promoter-TSS (NM_178357)	-138.0	NM_178357	194655.0	Mm.9616	NM_178357	ENSMUSG00000020653	Klf11	9830142A17|D12Ertd427e|Tieg2|Tieg2b|Tieg3	Kruppel-like factor 11	protein-coding	3.21171752943451	3.9655109311807	3.97312310433642	2.95464389461676	4.12788417507659	3.99407388814737	4.97067360933278	3.81649514331687	0.989321277124943	0.0529502896847223	0.336825252383624
Merged-chr15-27563639-3	chr15	27563551	27563751	+	676.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020332, intron 5 of 11)	intron (NM_020332, intron 5 of 11)	-7843.0	NR_106065	102466808.0		NR_106065	ENSMUSG00000098416	Mir7117	Gm27729|mmu-mir-7117	microRNA 7117	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-25540639-3	chr18	25540547	25540747	+	621.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362322, intron 2 of 12)	intron (NM_001362322, intron 2 of 12)	139101.0	NM_001362337	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-56037790-4	chr16	56037690	56037890	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029092)	promoter-TSS (NM_029092)	-16.0	NM_029092	52575.0	Mm.288742	NM_029092	ENSMUSG00000044763	Trmt10c	1300018J16Rik|D16Ertd454e|Rg9mtd1|Rnmtd1	tRNA methyltransferase 10C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-89424451-2	chr6	89424351	89424551	+	625.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001167736, intron 4 of 6)	intron (NM_001167736, intron 4 of 6)	-61838.0	NM_008881	18844.0	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-32717772-2	chr19	32717672	32717872	+	875.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-5474.0	NM_026487	67979.0	Mm.27123	NM_026487	ENSMUSG00000013662	Atad1	4921525H23Rik|AW107648|Thorase	ATPase family, AAA domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-44725078-4	chr16	44724960	44725160	+	875.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145972, intron 1 of 8)	intron (NM_145972, intron 1 of 8)	759.0	NM_145972	212547.0	Mm.310573	NM_145972	ENSMUSG00000036208	Nepro	-	nucleolus and neural progenitor protein	protein-coding	0.793859336819661	0.553935244135922	1.10668266268794	1.06650744344682	0.676218972014038	0.910175229803296	0.875158605138046	0.705371231501558	-0.615653582567795	0.678903161647997	1
Merged-chr1-128044419-4	chr1	128044366	128044566	+	979.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285945, intron 3 of 20)	intron (NM_001285945, intron 3 of 20)	58005.0	NM_027678	226409.0	Mm.425048	NM_027678	ENSMUSG00000036086	Zranb3	4933425L19Rik|AH2|AI316834|C730006D09	zinc finger, RAN-binding domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-64189453-4	chr15	64189355	64189555	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 5 of 28)	intron (NM_001276461, intron 5 of 28)	123218.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	2.95235544133254	2.10341624334125	1.26012741484224	2.31554228559711	1.88863350376426	1.96241952021807	1.89777699433965	1.98431479111675	-0.934312105384712	0.337492679149193	0.837311241611253
Merged-chr1-135733174-2	chr1	135733074	135733274	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007791, intron 1 of 5)	intron (NM_007791, intron 1 of 5)	4007.0	NM_007791	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-30628844-4	chr13	30628754	30628954	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	13811.0	NR_045975	75090.0	Mm.292232	NR_045975	ENSMUSG00000086263	4930519D14Rik	-	RIKEN cDNA 4930519D14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-108571654-4	chr3	108571623	108571823	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025444)	promoter-TSS (NM_025444)	24.0	NM_025444	99730.0	Mm.24431	NM_025444	ENSMUSG00000048100	Taf13	1810004N01Rik|2010309N11Rik|AI847295|TAFII18	TATA-box binding protein associated factor 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-148792752-2	chr3	148792652	148792852	+	876.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	161883.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-5819106-4	chr18	5819020	5819220	+	963.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	226473.0	NM_001360981	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	3.03539015253219	3.98027733553577	4.13599994047416	2.99405321043094	3.53017619720138	2.79531342645969	3.67417857393421	3.99716955035399	-0.0909348093732644	0.875249684458706	0.998431161219273
Merged-chr14-103946594-2	chr14	103946494	103946694	+	807.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	80548.0	NR_045953	73877.0	Mm.399172	NR_045953	ENSMUSG00000115727	4930432J09Rik	-	RIKEN cDNA 4930432J09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-95640804-2	chr4	95640704	95640904	+	724.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029347, intron 5 of 10)	intron (NM_029347, intron 5 of 10)	61383.0	NM_029347	75578.0	Mm.276098	NM_029347	ENSMUSG00000028573	Fggy	2310009E04Rik	FGGY carbohydrate kinase domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-102806752-4	chr14	102806652	102806852	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	175880.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-73628053-2	chr15	73627953	73628153	+	602.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3309.0	NM_001033219	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-74555628-3	chr7	74555553	74555753	+	907.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023908)	promoter-TSS (NM_023908)	-873.0	NM_001038643	108116.0	Mm.425467	NM_023908	ENSMUSG00000025790	Slco3a1	5830414C08Rik|Anr1|MJAM|OATP-D|R75096|Slc21a11	solute carrier organic anion transporter family, member 3a1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-61228474-4	chr19	61228380	61228580	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009970)	promoter-TSS (NM_009970)	-62.0	NM_009970	12982.0	Mm.287228	NM_009970	ENSMUSG00000059326	Csf2ra	CD116|Csfgmra|GM-CSF-Ra|GM-CSFR	colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-7873025-4	chr9	7872918	7873118	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_007464, exon 1 of 9)	5' UTR (NM_007464, exon 1 of 9)	152.0	NM_007464	11796.0	Mm.2026	NM_007464	ENSMUSG00000032000	Birc3	AW107670|Api1|Api2|Birc2|C-IAP2|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF49|cIAP-1|cIAP-2|cIAP1|cIAP2	baculoviral IAP repeat-containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-103107819-3	chr4	103107766	103107966	+	867.333374	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146254, intron 1 of 16)	B3|SINE|B2	6433.0	NM_146254	242584.0	Mm.374877	NM_146254	ENSMUSG00000035126	Wdr78	BC028975	WD repeat domain 78	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-75283555-2	chr18	75283455	75283655	+	920.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_027727, intron 16 of 16)	intron (NM_027727, intron 16 of 16)	13762.0	NR_045394	100503117.0	Mm.250517	NR_045393	ENSMUSG00000102047	2010010A06Rik	5033420E22Rik	RIKEN cDNA 2010010A06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55767792-4	chr19	55767687	55767887	+	779.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001331146, intron 4 of 14)	(TC)n|Simple_repeat|Simple_repeat	25977.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-116093238-4	chr7	116093140	116093340	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019772)	promoter-TSS (NM_019772)	-91.0	NR_029433	69350.0	Mm.440425	NR_029433	ENSMUSG00000087621	1700003G18Rik	2610312K03Rik	RIKEN cDNA 1700003G18 gene	ncRNA	6.13258033130226	6.1738908650023	6.52272776672731	6.45363762535702	5.57264581797074	6.40546499524128	6.02301152918827	6.40862402799816	-0.212000862905818	0.37957219810212	0.871899780487614
Merged-chr8-119811903-5	chr8	119811725	119811925	+	913.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028071, intron 3 of 3)	intron (NM_028071, intron 3 of 3)	28754.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-5040954-4	chr2	5040817	5041017	+	827.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356487, intron 5 of 13)	intron (NM_001356487, intron 5 of 13)	23200.0	NM_181848	71648.0	Mm.116942	NM_181848	ENSMUSG00000026672	Optn	4930441O07Rik|FIP2|HYPL|NRP	optineurin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-88213637-2	chr1	88213537	88213737	+	968.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_201645, intron 1 of 4)	intron (NM_201645, intron 1 of 4)	1678.0	NM_201645	394436.0	Mm.300095	NM_201645	ENSMUSG00000089960	Ugt1a1	Gnt1|UDPGT 1-1|UGT1A01|Udpgt-1a|UgtBr1	UDP glucuronosyltransferase 1 family, polypeptide A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-21790711-2	chr16	21790611	21790811	+	565.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2877.0	NM_023737	74147.0	Mm.28100	NM_023737	ENSMUSG00000022853	Ehhadh	1300002P22Rik|HD|L-PBE|LBFP|LBP|MFP|MFP1|PBFE	enoyl-Coenzyme A, hydratase/3-hydroxyacyl Coenzyme A dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-13664731-3	chr9	13664629	13664829	+	854.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173776, intron 1 of 3)	intron (NM_173776, intron 1 of 3)	2269.0	NM_173776	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-148170976-3	chr4	148170863	148171063	+	854.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10295.0	NM_176848	230904.0	Mm.262287	NM_176848	ENSMUSG00000041556	Fbxo2	FBG1|FBX2|Fbs1|Fbs2|NFB42|Prpl4	F-box protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88686266-1	chr3	88686166	88686366	+	573.0	f0_c57.idr	intron (NR_151827, intron 1 of 13)	CpG	479.0	NR_151827	74200.0	Mm.251800	NM_028814	ENSMUSG00000028060	2810403A07Rik	A430106P18Rik|AI256352|AI451678|Blom7|Khdc4|Kiaa0907	RIKEN cDNA 2810403A07 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-60802629-2	chr18	60802546	60802746	+	805.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR30|LTR|ERV1	-1203.0	NM_001042605	16149.0	Mm.439737	NM_010545	ENSMUSG00000024610	Cd74	CLIP|DHLAG|HLADG|Ia-GAMMA|Ii	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	protein-coding	2.63964990321636	3.12405398553187	2.3492301777263	2.40146426331229	2.58093107257028	2.8020215124216	1.39668460391972	1.61705586113144	-0.873430740925352	0.327615037910698	0.830201047209073
Merged-chr15-103514825-2	chr15	103514725	103514925	+	867.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285890)	promoter-TSS (NM_001285890)	-152.0	NM_001285890	18574.0	Mm.390792	NM_008800	ENSMUSG00000022489	Pde1b	Pde1b1	phosphodiesterase 1B, Ca2+-calmodulin dependent	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-72942554-1	chr1	72942454	72942654	+	910.5	f0_balb.idr	Intergenic	RMER19B|LTR|ERVK	-67689.0	NM_010518	16011.0	Mm.405761	NM_010518	ENSMUSG00000026185	Igfbp5	AI256729|AW208790|IGFBP-5|IGFBP-5P	insulin-like growth factor binding protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-6222868-1	chr4	6222768	6222968	+	656.0	f1_c57bl6.idr	Intergenic	Intergenic	31763.0	NM_026534	68053.0	Mm.404043	NM_026534	ENSMUSG00000028243	Ubxn2b	3110003A22Rik|6430407D20Rik|AI451665|p37	UBX domain protein 2B	protein-coding	1.11349089399588	1.71563200456725	2.28268967424083	0.591947268750912	0.56975171025444	0.630251616914658	0.611329251365554	1.20334543815875	-3.02529806838431	0.0523423292060975	0.334910861389138
Merged-chr17-34671685-4	chr17	34671556	34671756	+	831.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_031176, exon 2 of 33)	exon (NM_031176, exon 2 of 33)	1121.0	NM_031176	81877.0	Mm.290527	NM_031176	ENSMUSG00000033327	Tnxb	Tn-mhc|Tnx	tenascin XB	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80592073-2	chr10	80591973	80592173	+	660.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1732.0	NM_145421	216169.0	Mm.29802	NM_145421	ENSMUSG00000003346	Abhd17a	1700013O15Rik|BC005632|D10Bwg1364e|Fam108a	abhydrolase domain containing 17A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4757049-6	chr16	4756927	4757127	+	934.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357050)	promoter-TSS (NM_001357050)	81.0	NM_001357050	15369.0	Mm.272866	NM_010443	ENSMUSG00000004070	Hmox2	HO-2|HO2	heme oxygenase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-105630314-1	chr4	105630214	105630414	+	721.0	f1_balb.idr	Intergenic	Intergenic	472967.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	-1.26443160715111	-1.51269227652887	-1.52213727607237	-1.52989567991432	-1.54173241655551	-1.51064550572703	-1.37138617352608	-1.528506929336	-0.563662181339258	0.873093626595385	1
Merged-chr19-41374777-4	chr19	41374677	41374877	+	980.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 2 of 16)	intron (NM_031376, intron 2 of 16)	10293.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-38898033-2	chr1	38897942	38898142	+	563.0	f0_balb.idr|f1_c57bl6.idr	5' UTR (NM_145142, exon 1 of 7)	5' UTR (NM_145142, exon 1 of 7)	118.0	NM_145142	98388.0	Mm.260054	NM_145142	ENSMUSG00000026080	Chst10	AI507003|AU041319|Hnk-1st|ST	carbohydrate sulfotransferase 10	protein-coding	0.601619208012309	1.62747081152997	0.665455445355487	0.432353242994574	0.76611641753925	1.45015871398445	0.444904193436721	0.434074863541828	-0.342600615197338	0.834357806202733	0.998431161219273
Merged-chr16-4920789-4	chr16	4920708	4920908	+	990.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357062, intron 9 of 17)	intron (NM_001357062, intron 9 of 17)	-18303.0	NM_001316715	66911.0	Mm.428698	NM_025839	ENSMUSG00000022516	Nudt16l1	1110001K21Rik|5330437I08Rik|Sdos	nudix (nucleoside diphosphate linked moiety X)-type motif 16-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-59338004-2	chr2	59337904	59338104	+	848.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 13 of 20)	intron (NM_175464, intron 13 of 20)	48678.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-48877178-2	chr13	48877078	48877278	+	830.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6293.0	NM_011078	18676.0	Mm.486213	NM_011078	ENSMUSG00000038025	Phf2	GRC5	PHD finger protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-51847420-3	chr13	51847320	51847520	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011817, exon 2 of 4)	exon (NM_011817, exon 2 of 4)	745.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126765984-3	chr7	126765880	126766080	+	653.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024228)	promoter-TSS (NM_024228)	-434.0	NM_024228	68616.0	Mm.246881	NM_024228	ENSMUSG00000030703	Gdpd3	1110015E22Rik	glycerophosphodiester phosphodiesterase domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-32160458-3	chr4	32160385	32160585	+	721.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	196378.0	NM_172688	26409.0	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding	2.09711816151193	2.51679646381945	1.43018566111642	2.59408304371182	2.57580755993475	3.63927647649457	2.79941539879181	2.49486814981188	1.43807947877443	0.0785875065961266	0.426850598553126
Merged-chr2-160210032-4	chr2	160209955	160210155	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	117439.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-61648868-4	chr14	61648775	61648975	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028264, intron 1 of 6)	CpG	-16765.0	NR_029733	387174.0		NR_029733	ENSMUSG00000093007	Mir15a	Mirn15a|mir-15a|mmu-mir-15a	microRNA 15a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-68892691-2	chr11	68892591	68892791	+	697.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_177060, exon 3 of 3)	exon (NM_177060, exon 3 of 3)	4138.0	NM_177060	320040.0	Mm.305696	NM_177060	ENSMUSG00000046490	Rnf222	9930039A11Rik	ring finger protein 222	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-34119193-4	chr18	34119093	34119293	+	919.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-101791.0	NM_007462	11789.0	Mm.384171	NM_007462	ENSMUSG00000005871	Apc	AI047805|AU020952|AW124434|CC1|Min|mAPC	adenomatosis polyposis coli	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116093867-4	chr11	116093764	116093964	+	973.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6869.0	NM_001347642	22378.0	Mm.284792	NM_016852	ENSMUSG00000034341	Wbp2	-	WW domain binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97388271-2	chr6	97388171	97388371	+	782.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 6 of 23)	PB1D10|SINE|Alu	71015.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101907772-2	chr7	101907672	101907872	+	762.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025605, intron 1 of 4)	intron (NM_025605, intron 1 of 4)	-1413.0	NM_001081679	791260.0	Mm.475469	NM_001081679	ENSMUSG00000078630	Tomt	Comt2|F930017I19Rik	transmembrane O-methyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-31068978-4	chr2	31068886	31069086	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355105, intron 6 of 15)	intron (NM_001355105, intron 6 of 15)	27514.0	NM_001177650	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-122534244-4	chr14	122534140	122534340	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144844)	promoter-TSS (NM_144844)	-88.0	NM_144844	110821.0	Mm.23876	NM_144844	ENSMUSG00000041650	Pcca	C79630	propionyl-Coenzyme A carboxylase, alpha polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152609674-3	chr1	152609551	152609751	+	619.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346119, intron 2 of 17)	intron (NM_001346119, intron 2 of 17)	15566.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-10873864-4	chr16	10873782	10873982	+	889.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38823.0	NM_001162932	223970.0	Mm.325777	NM_001033278	ENSMUSG00000037991	Rmi2	A630055G03Rik|Gm537|Gm929	RecQ mediated genome instability 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-23534293-3	chr13	23534205	23534405	+	715.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_175661)	TTS (NM_175661)	394.0	NM_175661	319173.0	Mm.377878	NM_175661	ENSMUSG00000061991	Hist1h2af	H2a-221	histone cluster 1, H2af	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-68957286-4	chr9	68957178	68957378	+	994.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013646, intron 1 of 10)	intron (NM_013646, intron 1 of 10)	191932.0	NR_033299	320440.0	Mm.483129	NM_177159		9530091C08Rik	-	RIKEN cDNA 9530091C08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-60931961-4	chr11	60931845	60932045	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027800)	promoter-TSS (NR_027800)	-78.0	NR_027800	24082.0	Mm.46270	NM_025293	ENSMUSG00000042549	Map2k3os	F3-1|Gm16516|Gtlf3a	mitogen-activated protein kinase kinase 3, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-80943561-2	chr12	80943461	80943661	+	631.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045057, intron 1 of 2)	B1_Mur1|SINE|Alu	1838.0	NR_045057	100504661.0	Mm.442322	NR_045057	ENSMUSG00000112880	Gm20337	-	predicted gene, 20337	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-58660046-4	chr18	58659972	58660172	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025478, intron 1 of 4)	intron (NM_025478, intron 1 of 4)	590.0	NM_025478	66307.0	Mm.182574	NM_025478	ENSMUSG00000024601	Isoc1	2610034N03Rik	isochorismatase domain containing 1	protein-coding	3.12847660858325	4.29587795848545	4.0421971224379	4.34821640972863	3.05482531291367	3.84158344239653	4.40014745812797	4.07013586359015	-0.145119118641614	0.778833562267368	0.998431161219273
Merged-chr13-112510573-3	chr13	112510466	112510666	+	865.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46496.0	NM_010560	16195.0	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-121083108-4	chr11	121083002	121083202	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1963.0	NM_145373	209588.0	Mm.69553	NM_145373	ENSMUSG00000025165	Sectm1a	BC010462	secreted and transmembrane 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-34236588-2	chr11	34236488	34236688	+	783.208374	f1_balb.idr|f1_c57bl6.idr	intron (NM_033374, intron 46 of 51)	intron (NM_033374, intron 46 of 51)	-28499.0	NM_023907	14233.0	Mm.32926	NM_023907	ENSMUSG00000047861	Foxi1	5830401E05Rik|FREAC6|Fkh10|HFH-3|Hfh3	forkhead box I1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127522400-4	chr10	127522265	127522465	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252316)	promoter-TSS (NM_001252316)	79.0	NM_001252316	108037.0	Mm.29890	NM_028230	ENSMUSG00000025403	Shmt2	2700043D08Rik|AA408223|AA986903|SHMT	serine hydroxymethyltransferase 2 (mitochondrial)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-12247996-1	chr12	12247896	12248096	+	630.0	f1_balb.idr	Intergenic	Intergenic	-14143.0	NM_029758	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	3.7290710630238	3.05822328936756	2.65509931322484	3.09254361887081	4.40899189616252	3.71010716482039	3.09860649777702	4.18625918847601	1.11065336173805	0.0530401047538585	0.336825252383624
Merged-chr11-53890975-2	chr11	53890875	53891075	+	838.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_011396, intron 1 of 9)	intron (NM_011396, intron 1 of 9)	728.0	NM_011396	20520.0	Mm.42253	NM_011396	ENSMUSG00000018900	Slc22a5	Lstpl|Octn2|jvs	solute carrier family 22 (organic cation transporter), member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-116448932-2	chr1	116448832	116449032	+	628.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077425, intron 18 of 23)	Lx2|LINE|L1	763795.0	NM_001077425	636808.0	Mm.101576	NM_001077425	ENSMUSG00000070695	Cntnap5a	Caspr5-1|EG636808	contactin associated protein-like 5A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-84870063-4	chr11	84869895	84870095	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_131201)	promoter-TSS (NR_131201)	-10.0	NR_131201	102635561.0	Mm.341797	NR_131197		Ggnbp2os	-	gametogenetin binding protein 2, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-86792920-3	chr5	86792816	86793016	+	952.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC-int|LTR|ERVL-MaLR	-11350.0	NM_001347375	231386.0	Mm.196325	NM_177680	ENSMUSG00000035851	Ythdc1	A730098D12Rik|C80342|mKIAA1966	YTH domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-67244271-2	chr8	67244171	67244371	+	799.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4B|LINE|L1	-246487.0	NM_008673	17960.0	Mm.14125	NM_008673	ENSMUSG00000025588	Nat1	Nat-1	N-acetyl transferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-148092835-2	chr4	148092735	148092935	+	584.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4771.0	NM_001301281	11610.0	Mm.46247	NM_009642	ENSMUSG00000029007	Agtrap	3300002E14Rik|AT1R|Atrap|D4Wsu124e	angiotensin II, type I receptor-associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6487330-4	chr19	6487204	6487404	+	772.145813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205234, intron 11 of 22)	intron (NM_001205234, intron 11 of 22)	55766.0	NM_009203	20521.0	Mm.391146	NM_009203	ENSMUSG00000061742	Slc22a12	AI987855|OAT4L|Rst|Slc22al2|URAT1	solute carrier family 22 (organic anion/cation transporter), member 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-110626591-3	chr13	110626451	110626651	+	853.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	231507.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-8495363-2	chr12	8495263	8495463	+	551.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4646.0	NM_007483	11852.0	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-21706769-2	chr14	21706669	21706869	+	692.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013826, intron 1 of 3)	intron (NM_001013826, intron 1 of 3)	7807.0	NM_001013826	435391.0	Mm.295860	NM_001013826	ENSMUSG00000063821	Dupd1	EG435391	dual specificity phosphatase and pro isomerase domain containing 1	protein-coding	0.710352333633048	0.206748482294995	0.623390419688513	0.1974804239385	0.442519694998579	0.389823338085955	0.369150741232362	0.351449637438503	-0.55152596945521	0.759012542492279	1
Merged-chr12-100183153-2	chr12	100183053	100183253	+	922.125	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4815.0	NR_045282	100038378.0	Mm.387075	NR_045282	ENSMUSG00000072884	Gm10433	-	predicted gene 10433	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-60289410-4	chr10	60289341	60289541	+	860.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146124, intron 1 of 13)	intron (NM_001146124, intron 1 of 13)	4980.0	NM_001146124	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-29510493-2	chr6	29510393	29510593	+	721.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-2541.0	NM_001029985	333088.0	Mm.332961	NM_001029985	ENSMUSG00000059022	Kcp	AW060220|CRIM-2|Crim2|Gm793|KCP-1	kielin/chordin-like protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-19975152-4	chr14	19975084	19975284	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285908, intron 1 of 3)	intron (NM_001285908, intron 1 of 3)	1509.0	NM_001285911	14702.0	Mm.41737	NM_010315	ENSMUSG00000043004	Gng2	-	guanine nucleotide binding protein (G protein), gamma 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-170311166-4	chr2	170311074	170311274	+	951.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45187.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-98337427-1	chr3	98337327	98337527	+	580.0	f1_c57bl6.idr	intron (NM_016966, intron 1 of 11)	intron (NM_016966, intron 1 of 11)	2542.0	NM_016966	236539.0	Mm.16898	NM_016966	ENSMUSG00000053398	Phgdh	3-PGDH|3PGDH|4930479N23|A10|PGAD|PGD|PGDH|SERA	3-phosphoglycerate dehydrogenase	protein-coding	1.40444856331519	2.28772917092893	0.927627156981627	0.910509661311635	1.54665609832045	1.60615672261563	2.21978399692354	1.14460667216609	0.455724214611455	0.716162741714962	0.998431161219273
Merged-chr3-106485202-4	chr3	106485118	106485318	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028110)	promoter-TSS (NM_028110)	695.0	NR_033207	69206.0	Mm.14816	NM_001033146	ENSMUSG00000091575	2010016I18Rik	-	RIKEN cDNA 2010016I18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-23834938-2	chr17	23834838	23835038	+	790.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081399, intron 3 of 5)	intron (NM_001081399, intron 3 of 5)	829.0	NM_001081399	353130.0	Mm.261689	NM_178370	ENSMUSG00000049620	Prss33	Eos|mT6|tryptase-6	protease, serine 33	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-130817685-2	chr4	130817585	130817785	+	578.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011520, intron 2 of 4)	intron (NM_011520, intron 2 of 4)	25148.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132247710-4	chr4	132247603	132247803	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122992, intron 3 of 10)	intron (NM_001122992, intron 3 of 10)	13846.0	NM_020273	56809.0	Mm.103489	NM_020273	ENSMUSG00000028901	Gmeb1	1110050A04Rik|AI256615|AI481278	glucocorticoid modulatory element binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-8594116-4	chr3	8594050	8594250	+	891.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33901.0	NR_153352	102635065.0		NR_153352	ENSMUSG00000104102	Gm32496	-	predicted gene, 32496	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-28573576-4	chr13	28573474	28573674	+	799.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045054, intron 6 of 7)	intron (NR_045054, intron 6 of 7)	137299.0	NR_105787	102466635.0		NR_105787	ENSMUSG00000099158	Mir6368	Gm27800|mmu-mir-6368	microRNA 6368	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-62578490-4	chr10	62578367	62578567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028197)	promoter-TSS (NM_028197)	-10.0	NM_028197	72320.0	Mm.258955	NM_028197	ENSMUSG00000036955	Kif1bp	0710007C18Rik|2510003E04Rik|KBP|mKIAA1279	KIF1 binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-37965956-2	chr19	37965856	37966056	+	595.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001302140, intron 19 of 53)	intron (NM_001302140, intron 19 of 53)	77621.0	NM_001099634	226101.0	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-61928136-4	chr8	61928043	61928243	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001293783)	promoter-TSS (NM_001293783)	56.0	NM_001293783	234311.0	Mm.275233	NM_144928	ENSMUSG00000037921	Ddx60	9830118M07	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-11939735-3	chr18	11939612	11939812	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022021, intron 6 of 8)	intron (NM_022021, intron 6 of 8)	-99274.0	NR_035447	100316686.0		NR_035447	ENSMUSG00000084565	Mir1901	Mirn1901|mmu-mir-1901	microRNA 1901	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128410712-2	chr10	128410612	128410812	+	955.599976	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_104288)	promoter-TSS (NR_104288)	-161.0	NM_001358972	69917.0	Mm.46614	NM_027257	ENSMUSG00000025374	Nabp2	2610036N15Rik|Obfc2b|SSB1	nucleic acid binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135707981-4	chr5	135707885	135708085	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008898, intron 1 of 15)	intron (NM_008898, intron 1 of 15)	18840.0	NM_008898	18984.0	Mm.3863	NM_008898	ENSMUSG00000005514	Por	4933424M13Rik|CPR|CYPOR|P450R	P450 (cytochrome) oxidoreductase	protein-coding	5.80549363737109	5.21845742594749	5.7830728889458	5.94191044273977	5.8947799250417	5.25319425499179	5.86630347618006	5.96612995037981	0.0667889325151614	0.804961967752794	0.998431161219273
Merged-chr8-36995459-4	chr8	36995394	36995594	+	965.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001039220)	TTS (NM_001039220)	1919.0	NM_001039220	621080.0	Mm.373292	NM_001039220	ENSMUSG00000074384	AI429214	-	expressed sequence AI429214	protein-coding	4.30682228703236	4.08018638363387	5.13216478070476	3.60945915470432	4.02259426752348	3.87633201378794	4.04448716055558	3.13212083337613	-0.788062542048423	0.112436845904551	0.52504564497774
Merged-chr12-100505631-4	chr12	100505523	100505723	+	943.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033213, intron 1 of 19)	intron (NM_001033213, intron 1 of 19)	15199.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-85751680-4	chr1	85751590	85751790	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_106172)	promoter-TSS (NR_106172)	-258.0	NR_106172	102466882.0		NR_106172	ENSMUSG00000098634	Mir8096	Gm27479|mmu-mir-8096	microRNA 8096	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-4556911-4	chr7	4556812	4557012	+	871.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207270, intron 12 of 19)	intron (NM_207270, intron 12 of 19)	-9371.0	NM_001360422	53420.0	Mm.358663	NM_016908	ENSMUSG00000004961	Syt5	SytV	synaptotagmin V	protein-coding	0.688629606090858	0.932778663926064	0.556327622282599	0.72146746283703	1.29678693104074	1.08550516868625	0.558279981023776	1.11207247935763	1.72410303759514	0.268235260656609	1
Merged-chr10-81241077-4	chr10	81240949	81241149	+	756.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034895, intron 4 of 17)	intron (NM_001034895, intron 4 of 17)	7886.0	NM_001034895	103406.0	Mm.158783	NM_001034895	ENSMUSG00000034949	Zfr2	2010013I23Rik|9130206N08Rik|AW045600|mKIAA1086	zinc finger RNA binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-84856203-4	chr15	84856118	84856318	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081166)	promoter-TSS (NM_001081166)	-89.0	NR_030731	271305.0	Mm.101022	NM_001081166	ENSMUSG00000016624	Phf21b	A730032D07Rik	PHD finger protein 21B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80406083-2	chr10	80405983	80406183	+	830.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025650, intron 1 of 2)	intron (NM_025650, intron 1 of 2)	738.0	NM_025650	66594.0	Mm.379119	NM_025650	ENSMUSG00000020163	Uqcr11	0710008D09Rik|AL022707|Uqcr	ubiquinol-cytochrome c reductase, complex III subunit XI	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127251538-2	chr7	127251438	127251638	+	546.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360916, intron 2 of 2)	intron (NM_001360916, intron 2 of 2)	6437.0	NM_001360916	244216.0	Mm.41038	NM_177362	ENSMUSG00000054716	Zfp771	G630024C07Rik|Znf771	zinc finger protein 771	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-145718773-2	chr2	145718673	145718873	+	571.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_033220, intron 2 of 3)	RMER1A|Other|Other	17578.0	NR_033220	408057.0	Mm.486711	NR_033220	ENSMUSG00000087594	BC039771	-	cDNA sequence BC039771	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-79333247-2	chr15	79333147	79333347	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-4876.0	NM_001199023	53357.0	Mm.155620	NM_016915	ENSMUSG00000042632	Pla2g6	BB112799|PNPLA9|iPLA(2)beta|iPLA2|iPLA2beta	phospholipase A2, group VI	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167055816-4	chr2	167055702	167055902	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001033196, exon 3 of 14)	exon (NM_001033196, exon 3 of 14)	-7132.0	NR_138563	68949.0	Mm.391959	NM_001081005		Zfas1	1500012F01Rik|Zfos1	zinc finger, NFX1-type containing 1, antisense RNA 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-78301546-1	chr16	78301446	78301646	+	704.0	f0_balb.idr	promoter-TSS (NM_001276263)	promoter-TSS (NM_001276263)	-125.0	NM_009988	13052.0	Mm.66222	NM_009988	ENSMUSG00000022865	Cxadr	2610206D03Rik|AU016810|AW553441|CAR|MCAR|MCVADR	coxsackie virus and adenovirus receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-87683905-2	chr1	87683805	87684005	+	570.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110192, intron 9 of 26)	intron (NM_001110192, intron 9 of 26)	63593.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-21676155-4	chr5	21676035	21676235	+	774.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359964, intron 2 of 4)	intron (NM_001359964, intron 2 of 4)	25261.0	NM_001359964	242864.0	Mm.153292	NM_178728	ENSMUSG00000044968	Napepld	A530089G06|Mbldc1|NAPE-PLD	N-acyl phosphatidylethanolamine phospholipase D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-102566628-4	chr4	102566516	102566716	+	966.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019840, intron 5 of 14)	intron (NM_019840, intron 5 of 14)	-3444.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115530107-4	chr5	115529926	115530126	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011223, intron 1 of 10)	intron (NM_011223, intron 1 of 10)	23350.0	NM_133915	19303.0	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-105274088-2	chr4	105273988	105274188	+	704.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	116741.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-81703127-1	chr17	81703027	81703227	+	1000.0	f0_balb.idr	intron (NR_104580, intron 1 of 8)	intron (NR_104580, intron 1 of 8)	35260.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-30943506-4	chr16	30943394	30943594	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	137938.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-103388685-4	chr12	103388578	103388778	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026580)	promoter-TSS (NM_026580)	-3.0	NM_026580	68149.0	Mm.127378	NM_026580	ENSMUSG00000021203	Otub2	2010015L18Rik|4930586I02Rik|AI413508|AW557219|OTB2|OTU2	OTU domain, ubiquitin aldehyde binding 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-26055241-4	chr2	26055110	26055310	+	893.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_026495)	TTS (NM_026495)	-33450.0	NM_133835	98766.0	Mm.247824	NM_133835	ENSMUSG00000036352	Ubac1	1110033G07Rik|AA407978|GBDR1|Gdbr1|Kpc2|Ubadc1	ubiquitin associated domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-53274214-4	chr19	53274144	53274344	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19039.0	NR_036590	69319.0	Mm.57452	NR_036590		1700001K23Rik	-	RIKEN cDNA 1700001K23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-108672543-2	chr12	108672443	108672643	+	623.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163396, intron 4 of 14)	intron (NM_001163396, intron 4 of 14)	13923.0	NR_029771	723909.0		NR_029771	ENSMUSG00000065436	Mir342	Mirn342|mmu-mir-342	microRNA 342	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-155085005-2	chr4	155084905	155085105	+	725.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026395, intron 1 of 6)	L2a|LINE|L2	1292.0	NM_026395	67830.0	Mm.241604	NM_026395	ENSMUSG00000029048	Rer1	1110060F11Rik|5830454N22Rik|AU043380	retention in endoplasmic reticulum sorting receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-130821891-2	chr7	130821791	130821991	+	975.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081038, intron 14 of 15)	intron (NM_001081038, intron 14 of 15)	-43833.0	NM_133942	101476.0	Mm.323554	NM_133942	ENSMUSG00000040268	Plekha1	AA960558|C920009D07Rik|TAPP1	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-24700626-4	chr1	24700518	24700718	+	960.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026719, intron 3 of 15)	intron (NM_026719, intron 3 of 15)	21700.0	NM_001310483	68421.0	Mm.336563	NM_026719	ENSMUSG00000073725	Lmbrd1	0910001K20Rik|AV347960	LMBR1 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-4639005-2	chr18	4638905	4639105	+	694.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081963, intron 1 of 3)	intron (NM_001081963, intron 1 of 3)	4076.0	NM_001081963	240185.0	Mm.33179	NM_001081963	ENSMUSG00000033960	Jcad	1110056P05Rik|9430020K01Rik|Gm328|mKIAA1462	junctional cadherin 5 associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-82785370-4	chr18	82785273	82785473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER4B|LTR|ERVK	-26334.0	NR_045389	76961.0	Mm.396392	NR_045389	ENSMUSG00000101773	2210420H20Rik	-	RIKEN cDNA 2210420H20 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-37150352-2	chr3	37150252	37150452	+	598.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24398.0	NM_008366	16183.0	Mm.14190	NM_008366	ENSMUSG00000027720	Il2	Il-2	interleukin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-73604436-2	chr16	73604336	73604536	+	551.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	737631.0	NR_030464	751561.0		NR_030464	ENSMUSG00000104758	Mir691	Mirn691|mir-691|mmu-mir-691	microRNA 691	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-35663263-1	chr8	35663163	35663363	+	653.0	f1_balb.idr	intron (NM_001081279, intron 1 of 2)	intron (NM_001081279, intron 1 of 2)	-74243.0	NR_040376	100504714.0	Mm.381744	NR_040376	ENSMUSG00000097357	Gm16793	-	predicted gene, 16793	ncRNA	1.43515900550847	1.83730390110514	2.07579442838834	1.03228351574794	1.62368612384163	3.10080219363484	2.86104617892823	1.03737145440322	1.7552095097925	0.110832810392798	0.521003865985499
Merged-chr2-129196451-4	chr2	129196335	129196535	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-2338.0	NM_015747	20515.0	Mm.272675	NM_015747	ENSMUSG00000027397	Slc20a1	AI607883|Glvr-1|Glvr1	solute carrier family 20, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-168563408-4	chr2	168563288	168563488	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037177, intron 3 of 6)	intron (NM_001037177, intron 3 of 6)	26977.0	NM_001291178	18019.0	Mm.116802	NM_010899	ENSMUSG00000027544	Nfatc2	AI607462|NF-ATc2|NF-ATp|NFAT1|NFAT1-D|Nfatp	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-79523757-4	chr11	79523657	79523857	+	931.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001077496)	promoter-TSS (NM_001077496)	5.0	NM_001077496	216984.0	Mm.439665	NM_001077496	ENSMUSG00000093938	Evi2b	Evi-2|Evi2	ecotropic viral integration site 2b	protein-coding	2.62709945857948	1.70429482295347	1.15862490062655	1.38703250964155	2.43991164607707	1.19888856910052	2.26680941102256	2.97252902269107	1.11843839495567	0.306265937869475	0.806865344318695
Merged-chr14-72605018-2	chr14	72604918	72605118	+	642.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_207636, intron 3 of 25)	intron (NM_207636, intron 3 of 25)	104985.0	NM_207636	319448.0	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-74523080-4	chr13	74522946	74523146	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29096.0	NM_146231	235956.0		NM_146231	ENSMUSG00000069208	Zfp825	-	zinc finger protein 825	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-82036669-2	chr11	82036569	82036769	+	649.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011333, intron 2 of 2)	intron (NM_011333, intron 2 of 2)	1092.0	NM_011333	20296.0	Mm.290320	NM_011333	ENSMUSG00000035385	Ccl2	AI323594|HC11|JE|MCAF|MCP-1|MCP1|SMC-CF|Scya2|Sigje	chemokine (C-C motif) ligand 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-4811594-4	chr7	4811393	4811593	+	802.3154910000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_133777, exon 2 of 4)	exon (NM_133777, exon 2 of 4)	847.0	NM_133777	77891.0	Mm.389787	NM_133777	ENSMUSG00000060860	Ube2s	0910001J09Rik|6720465F12Rik|AA409170|E2-EPF	ubiquitin-conjugating enzyme E2S	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-34287922-1	chr10	34287822	34288022	+	543.0	f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	5732.0	NM_009433	22110.0	Mm.20445	NM_009433	ENSMUSG00000047514	Tspyl1	Tspyl	testis-specific protein, Y-encoded-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-136416448-4	chr1	136416352	136416552	+	981.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_024328)	promoter-TSS (NR_024328)	-933.0	NR_024328	320054.0	Mm.208000	NR_024328	ENSMUSG00000097403	9230116N13Rik	-	RIKEN cDNA 9230116N13 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-65345239-4	chr14	65345144	65345344	+	956.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13432.0	NM_199029	380912.0	Mm.270087	NM_199029	ENSMUSG00000034522	Zfp395	BC053701|Gm910	zinc finger protein 395	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-59415936-2	chr16	59415836	59416036	+	547.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081190, intron 2 of 8)	MIRb|SINE|MIR	8554.0	NM_001081190	328699.0	Mm.451970	NM_001081190	ENSMUSG00000074991	Gabrr3	-	gamma-aminobutyric acid (GABA) receptor, rho 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-34822781-2	chr1	34822681	34822881	+	757.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001160236, intron 3 of 6)	intron (NM_001160236, intron 3 of 6)	20269.0	NM_174997	214469.0	Mm.120151	NM_174997	ENSMUSG00000037503	Fam168b	Mani|mKIAA4042	family with sequence similarity 168, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-134251903-2	chr4	134251803	134252003	+	775.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001099296, exon 2 of 2)	exon (NM_001099296, exon 2 of 2)	2203.0	NM_001099296	72690.0	Mm.100168	NM_001099296	ENSMUSG00000050105	Grrp1	2810043G13Rik|Fam110d	glycine/arginine rich protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101381941-3	chr15	101381847	101382047	+	811.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11822.0	NM_028770	74127.0	Mm.440055	NM_028770	ENSMUSG00000037185	Krt80	1200016G03Rik|2310041I20Rik|Kb20	keratin 80	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-117029764-2	chr13	117029664	117029864	+	563.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4248.0	NM_001081009	52552.0	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27622779-5	chr17	27622686	27622886	+	821.766663	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001291046, exon 1 of 5)	5' UTR (NM_001291046, exon 1 of 5)	178.0	NM_001291046	56409.0	Mm.144699	NM_019837	ENSMUSG00000024213	Nudt3	1110011B09Rik|AA960325|Dipp|Dipp1	nudix (nucleotide diphosphate linked moiety X)-type motif 3	protein-coding	-0.428824356033123	-0.550631755417197	-0.553736850050534	-0.556118794614643	-0.30875218179574	-0.366874688480483	-0.121366228444952	-0.555703539743967	2.34950370687815	0.345435719889353	1
Merged-chr4-148742863-4	chr4	148742777	148742977	+	894.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-61515.0	NM_001159344	69743.0	Mm.233879	NM_027195	ENSMUSG00000028977	Casz1	2410019P08Rik|AV096627|BC040081|Cst|D4Ertd432e	castor zinc finger 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106458747-3	chr11	106458644	106458844	+	639.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023913, intron 2 of 21)	intron (NM_023913, intron 2 of 21)	29052.0	NM_023913	78943.0	Mm.340943	NM_023913	ENSMUSG00000020715	Ern1	9030414B18Rik|AI225830|C85377|Ire1a|Ire1alpha|Ire1p	endoplasmic reticulum (ER) to nucleus signalling 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19342216-4	chr7	19342116	19342316	+	890.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2855.0	NM_001127324	13870.0	Mm.280913	NM_007948	ENSMUSG00000003549	Ercc1	Ercc-1	excision repair cross-complementing rodent repair deficiency, complementation group 1	protein-coding	-0.491537298284542	-0.475797914103402	0.536033601358305	-0.484885560505284	-0.180896816370926	-0.474650644476559	-0.479780592325793	-0.484189612302897	-2.16355282627185	0.416770627884323	1
Merged-chr7-80833302-2	chr7	80833201	80833401	+	803.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28807.0	NM_009553	22691.0	Mm.358645	NM_009553	ENSMUSG00000038797	Zscan2	Zfp-29|Zfp29	zinc finger and SCAN domain containing 2	protein-coding	0.866440007944738	1.25243506959967	0.788867255890911	0.768894649518847	1.42321867859036	0.613052962501889	0.953907150987027	0.772400900648637	0.266406588067498	0.854489827391853	1
Merged-chr4-105291671-4	chr4	105291489	105291689	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	134242.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	1.516789576516	1.83506265663349	1.17607033828587	1.40543588747572	0.944720647692717	0.811300073345609	1.33500008443597	0.785368983065098	-2.22582832479059	0.104401776907343	0.503950676527456
Merged-chr2-35498648-2	chr2	35498548	35498748	+	608.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37199.0	NM_001145821	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56507827-4	chr17	56507730	56507930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4653.0	NM_011483	20834.0	Mm.76862	NM_011483	ENSMUSG00000044526	Znrf4	1700094M01Rik|Ssrzf1|spzn	zinc and ring finger 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-108767254-4	chr8	108767157	108767357	+	867.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007496, intron 1 of 9)	intron (NM_007496, intron 1 of 9)	52613.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	2.07172502418559	1.28189903317197	1.43894716436254	0.986909111810207	2.41518594996292	1.96130452031684	1.00949521701033	1.70341969168496	1.01435127698493	0.402929288680493	0.888448714577656
Merged-chr9-52098783-4	chr9	52098690	52098890	+	917.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16833.0	NR_105750	102465150.0		NR_105750	ENSMUSG00000099311	Mir6244	Gm27368|mmu-mir-6244	microRNA 6244	ncRNA	3.57373322068002	3.92467923186508	2.62390596364711	2.69223705749444	4.03602171546135	2.9026827692421	3.27721475337765	3.94264554184459	0.468119601302361	0.447288005980251	0.914498173479176
Merged-chr5-146818952-4	chr5	146818866	146819066	+	998.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-13924.0	NM_019647	19933.0	Mm.316592	NM_019647	ENSMUSG00000041453	Rpl21	8430440E03Rik|L21	ribosomal protein L21	protein-coding	3.06725786168004	3.72280543976637	3.8194132397943	3.71652245777613	3.84731141002613	3.3714223175333	4.19606149488589	3.15422126901284	0.151550218982289	0.776286243207066	0.998431161219273
Merged-chr1-105981036-4	chr1	105980932	105981132	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151625, intron 2 of 2)	intron (NR_151625, intron 2 of 2)	9250.0	NR_151625	635504.0	Mm.359717	NR_151625		Gm7160	EG635504	predicted gene 7160	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-75549054-2	chr15	75548954	75549154	+	644.875	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17594.0	NM_001135689	23934.0	Mm.22154	NM_011837	ENSMUSG00000022577	Ly6h	-	lymphocyte antigen 6 complex, locus H	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-75173250-2	chr14	75173150	75173350	+	679.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_008879, intron 1 of 16)	intron (NM_008879, intron 1 of 16)	36825.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-24456063-2	chr5	24455963	24456163	+	659.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359881, intron 1 of 15)	intron (NM_001359881, intron 1 of 15)	3886.0	NM_139153	213990.0	Mm.250703	NM_139153	ENSMUSG00000023353	Agap3	AGAP-3|AV028425|Centg3|Crag|Crag.|MRIP-1|cnt-g3	ArfGAP with GTPase domain, ankyrin repeat and PH domain 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-58481875-2	chr18	58481775	58481975	+	864.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74365.0	NM_001081072	225579.0	Mm.258517	NM_001081072	ENSMUSG00000024600	Slc27a6	4732438L20Rik|FACVL2|FATP6|VLCS-H1	solute carrier family 27 (fatty acid transporter), member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-107357343-4	chr3	107357252	107357452	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24063.0	NM_001045807	229700.0	Mm.27966	NM_001045807	ENSMUSG00000048109	Rbm15	C230088J01Rik|mKIAA1438	RNA binding motif protein 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-100513703-4	chr5	100513573	100513773	+	874.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4636.0	NM_001359203	26891.0	Mm.957	NM_012001	ENSMUSG00000035297	Cops4	AW208976|D5Ertd774e|SGN4	COP9 signalosome subunit 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-60390822-2	chr10	60390722	60390922	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252635, intron 30 of 68)	intron (NM_001252635, intron 30 of 68)	-8904.0	NM_001164374	100302688.0	Mm.444135	NM_001164374	ENSMUSG00000090439	Gm17455	-	predicted gene, 17455	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-65357150-4	chr5	65357053	65357253	+	981.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031180, intron 1 of 4)	Charlie21a|DNA|hAT-Charlie	8742.0	NM_031180	83379.0	Mm.45274	NM_031180	ENSMUSG00000029195	Klb	AV071179|betaKlotho	klotho beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-82007040-5	chr11	82006976	82007176	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28501.0	NM_011333	20296.0	Mm.290320	NM_011333	ENSMUSG00000035385	Ccl2	AI323594|HC11|JE|MCAF|MCP-1|MCP1|SMC-CF|Scya2|Sigje	chemokine (C-C motif) ligand 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-43865478-4	chr5	43865370	43865570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3339.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	4.26426831351352	3.540267416648	3.68899015463391	4.04904580737788	3.93688328047541	4.26239664940639	3.63333078520221	3.82447630784737	0.00528856320084368	0.990962378950609	0.998431161219273
Merged-chr11-20110419-2	chr11	20110319	20110519	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146243, intron 1 of 8)	RSINE1|SINE|B4	2532.0	NM_146243	66713.0	Mm.259045	NM_146243	ENSMUSG00000020152	Actr2	4921510D23Rik|AA409782|Arp2|D6Ertd746e	ARP2 actin-related protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-34149754-4	chr8	34149678	34149878	+	965.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER5A|DNA|hAT-Charlie	-3039.0	NM_026609	68192.0	Mm.34212	NM_026609	ENSMUSG00000031513	Leprotl1	1110067H13Rik|1520402O14Rik|AI854296	leptin receptor overlapping transcript-like 1	protein-coding	2.628471723534	1.80794815614994	1.92446629480517	1.26494124727028	2.34936254322588	2.54028969893444	2.7252840784507	1.7113177658805	0.850649586910072	0.378927654016003	0.871666483463932
Merged-chr11-8569093-2	chr11	8569005	8569205	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 4 of 30)	intron (NM_001083587, intron 4 of 30)	95430.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	-0.325523219287089	-0.0729870329188683	-0.698346409607964	-0.701003629601155	-0.704756005197865	-0.694122997021887	-0.69758651694788	-0.700539528171548	-3.25652399919928	0.253452741391918	1
Merged-chr6-72156552-2	chr6	72156452	72156652	+	744.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33355.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-16589514-1	chr11	16589414	16589614	+	632.0	f0_balb.idr	Intergenic	Intergenic	-81030.0	NM_001109971	20335.0	Mm.325350	NM_011343	ENSMUSG00000078974	Sec61g	-	SEC61, gamma subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-24678610-4	chr1	24678522	24678722	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310483)	promoter-TSS (NM_001310483)	78.0	NM_026719	68421.0	Mm.336563	NM_026719	ENSMUSG00000073725	Lmbrd1	0910001K20Rik|AV347960	LMBR1 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80669406-2	chr10	80669306	80669506	+	775.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_021462, intron 7 of 13)	intron (NM_021462, intron 7 of 13)	6887.0	NM_021462	17347.0	Mm.42126	NM_021462	ENSMUSG00000020190	Mknk2	2010016G11Rik|Gprk7|Mnk2	MAP kinase-interacting serine/threonine kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-142413010-2	chr5	142412910	142413110	+	852.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_199068, intron 1 of 8)	PB1D7|SINE|Alu	11513.0	NM_199068	17425.0	Mm.24214	NM_010812	ENSMUSG00000056493	Foxk1	A630048H08Rik|AI463295|Gm10868|Mnf	forkhead box K1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-65580265-2	chr3	65580165	65580365	+	542.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50851.0	NR_027955	71004.0	Mm.475465	NM_001033527	ENSMUSG00000074580	4931440P22Rik	-	RIKEN cDNA 4931440P22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-143038368-2	chr5	143038268	143038468	+	554.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359851, intron 12 of 15)	B1_Mur3|SINE|Alu	74652.0	NM_207110	108086.0	Mm.381440	NM_080561	ENSMUSG00000045078	Rnf216	2810055G22Rik|AI647468|AU019462|C86502|F830018F18Rik|TRIAD3|UIP83|Ubce7ip1	ring finger protein 216	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-116984043-4	chr2	116983956	116984156	+	994.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	83904.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-143526898-4	chr5	143526781	143526981	+	974.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347530, intron 1 of 6)	intron (NM_001347530, intron 1 of 6)	1112.0	NM_009007	19353.0	Mm.292510	NM_009007	ENSMUSG00000001847	Rac1	AL023026|D5Ertd559e	Rac family small GTPase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-120933826-2	chr7	120933726	120933926	+	618.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164096, intron 10 of 19)	intron (NM_001164096, intron 10 of 19)	16082.0	NM_001164096	26939.0	Mm.193632	NM_025298	ENSMUSG00000030880	Polr3e	RPC5|Sin	polymerase (RNA) III (DNA directed) polypeptide E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-44777135-4	chr17	44777049	44777249	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357320)	promoter-TSS (NM_001357320)	-17.0	NM_001357320	109115.0	Mm.431327	NM_178652	ENSMUSG00000038954	Supt3	2310066G22Rik|AI315192|SPT3|SPT3L|Supt3h	suppressor of Ty 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123369036-4	chr5	123368932	123369132	+	808.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029850, intron 4 of 5)	intron (NM_029850, intron 4 of 5)	24584.0	NM_029850	77045.0	Mm.151960	NM_029850	ENSMUSG00000029438	Bcl7a	4432415N06Rik|AI448316	B cell CLL/lymphoma 7A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28813165-2	chr7	28813065	28813265	+	887.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177301, intron 1 of 12)	intron (NM_177301, intron 1 of 12)	2275.0	NM_177301	15388.0	Mm.9043	NM_177301	ENSMUSG00000015165	Hnrnpl	C79783|D830027H13Rik|Hnrpl	heterogeneous nuclear ribonucleoprotein L	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-104028871-4	chr8	104028774	104028974	+	808.020813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72751.0	NM_009868	12562.0	Mm.21767	NM_009868	ENSMUSG00000031871	Cdh5	7B4|AA408225|Cd144|VE-Cad|VECD|VEcad|Vec	cadherin 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-172205478-2	chr1	172205299	172205499	+	731.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001329871, intron 1 of 3)	intron (NM_001329871, intron 1 of 3)	1405.0	NM_001329871	18611.0	Mm.544	NM_011063	ENSMUSG00000013698	Pea15a	Mat1|PEA-15|Pea15|Pkcs15	phosphoprotein enriched in astrocytes 15A	protein-coding	2.13060257731889	1.32230975838482	2.31353783250284	2.60963871108944	2.1485331804031	1.32905986061819	2.33203753678486	2.62327247991455	0.0355897784354136	0.971774709728329	0.998431161219273
Merged-chr13-108015357-4	chr13	108015278	108015478	+	981.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29096.0	NM_001048250	75616.0	Mm.491164	NM_001048250	ENSMUSG00000071180	Smim15	2810008M24Rik	small integral membrane protein 15	protein-coding	-1.06932346315282	-1.04545378193536	-0.220844647149311	-1.06494782147003	-1.06867040657128	-1.04264807175102	-1.05547001227371	-1.06448932552894	-3.08190232315036	0.346744811462451	1
Merged-chr2-102400673-4	chr2	102400575	102400775	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_020267, exon 1 of 5)	exon (NM_020267, exon 1 of 5)	225.0	NM_020267	80985.0	Mm.315002	NM_020267	ENSMUSG00000027189	Trim44	Dipb|Mc7	tripartite motif-containing 44	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32959529-2	chr2	32959429	32959629	+	776.666626	f1_balb.idr|f1_c57bl6.idr	exon (NM_199302, exon 2 of 25)	exon (NM_199302, exon 2 of 25)	1726.0	NM_199302	227738.0	Mm.248037	NM_199302	ENSMUSG00000026792	Lrsam1	-	leucine rich repeat and sterile alpha motif containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-93461161-2	chr15	93461061	93461261	+	582.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358749, intron 7 of 8)	RSINE1|SINE|B4	62697.0	NM_001285863	223828.0	Mm.74208	NM_146062	ENSMUSG00000036167	Pphln1	CR|HSPC206|HSPC232	periphilin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150568356-1	chr4	150568256	150568456	+	694.5	f1_c57bl6.idr	intron (NM_001085492, intron 11 of 22)	intron (NM_001085492, intron 11 of 22)	83818.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-50026940-4	chr11	50026848	50027048	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290750, intron 1 of 7)	intron (NM_001290750, intron 1 of 7)	1617.0	NM_001290750	59044.0	Mm.359004	NM_021540	ENSMUSG00000020376	Rnf130	2510042A13Rik|G1RZFP|G1rp|GOLIATH|GP	ring finger protein 130	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65533573-4	chr9	65533470	65533670	+	951.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	46517.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	2.35121730903861	2.18311566301025	1.81995049059833	1.9266869478497	2.09009773014013	2.63663492589244	2.46725370702522	1.935212859344	0.572020845204024	0.512173260076356	0.945296088769786
Merged-chr2-102161424-1	chr2	102161324	102161524	+	668.0	f0_balb.idr	intron (NM_178886, intron 1 of 5)	intron (NM_178886, intron 1 of 5)	25036.0	NM_178886	241576.0	Mm.489740	NM_178886	ENSMUSG00000048058	Ldlrad3	6430500P08|AI194318|Lrad3	low density lipoprotein receptor class A domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70970071-4	chr11	70969974	70970174	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252413)	promoter-TSS (NM_001252413)	-101.0	NM_001276406	19069.0	Mm.288962	NM_172394	ENSMUSG00000040667	Nup88	Nup84|Prei2	nucleoporin 88	protein-coding	5.68722552531432	5.58960238579195	5.23450105398877	5.98579691053434	5.62833473253133	5.59400551355194	5.2708053024349	5.97336053266069	-0.0130546145082329	0.962444979530476	0.998431161219273
Merged-chr8-56065303-2	chr8	56065203	56065403	+	705.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_080438, intron 5 of 9)	intron (NM_080438, intron 5 of 9)	124478.0	NM_080438	110304.0	Mm.307061	NM_080438	ENSMUSG00000038257	Glra3	-	glycine receptor, alpha 3 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97328343-2	chr11	97328238	97328438	+	620.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025927, intron 7 of 7)	intron (NM_025927, intron 7 of 7)	12622.0	NM_025927	67036.0	Mm.5381	NM_025927	ENSMUSG00000018882	Mrpl45	2600005P05Rik|AU043542|R75241	mitochondrial ribosomal protein L45	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-11788813-4	chr11	11788679	11788879	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20183.0	NM_021891	60530.0	Mm.236114	NM_021891	ENSMUSG00000035455	Fignl1	-	fidgetin-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-154597616-4	chr2	154597519	154597719	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021534, intron 1 of 3)	MTC|LTR|ERVL-MaLR	6054.0	NM_021534	59038.0	Mm.24673	NM_021534	ENSMUSG00000000876	Pxmp4	3010018P03Rik|Pmp24	peroxisomal membrane protein 4	protein-coding	3.67319863729707	4.28211313481632	3.97451745581717	2.43579321831097	3.09404685068407	4.13500642050773	4.50923107379982	3.26246020891099	0.186759759001748	0.753291180037672	0.998431161219273
Merged-chr3-79568057-4	chr3	79567934	79568134	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162999)	promoter-TSS (NM_001162999)	-158.0	NR_152118	75879.0	Mm.410800	NR_152118		4930589L23Rik	-	RIKEN cDNA 4930589L23 gene	ncRNA	2.34476013249142	2.52732819630038	1.3497386462833	1.30577270555512	4.00255612821024	3.31152418487281	3.11614732621568	2.36831578251388	2.49837595384273	0.00347184618289826	0.0504707720142326
Merged-chr6-5425654-4	chr6	5425520	5425720	+	894.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355662, intron 3 of 4)	intron (NM_001355662, intron 3 of 4)	35210.0	NM_001355662	65255.0	Mm.51340	NM_023048	ENSMUSG00000042607	Asb4	8430401O13Rik|AV117194|AW060255	ankyrin repeat and SOCS box-containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-62624144-4	chr13	62624020	62624220	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001324406)	promoter-TSS (NM_001324406)	62.0	NM_001324406	211378.0	Mm.247448	NM_173381	ENSMUSG00000072066	6720489N17Rik	9330128I06	RIKEN cDNA 6720489N17 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-35764522-1	chr16	35764422	35764622	+	727.0	f1_c57bl6.idr	intron (NM_153550, intron 1 of 8)	intron (NM_153550, intron 1 of 8)	4834.0	NM_153550	224132.0	Mm.24094	NM_153550	ENSMUSG00000022848	Dirc2	RCC4	disrupted in renal carcinoma 2 (human)	protein-coding	-1.02623923925007	-0.0785174723847883	-1.01664411116562	-1.02119558009008	-1.02548487198161	-0.999699361692546	-1.0134913975053	-1.0206685408436	-3.25251655617119	0.303463431741018	1
Merged-chr13-56165766-3	chr13	56165665	56165865	+	824.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	13120.0	NM_145976	212937.0	Mm.116697	NM_145976	ENSMUSG00000049625	Tifab	-	TRAF-interacting protein with forkhead-associated domain, family member B	protein-coding	2.79968613713847	2.68090955319161	3.12455564450112	3.56822687260057	2.63236001683528	3.16258942128599	1.88414695079203	2.96564974089213	-0.63039211129978	0.375202876125611	0.868268761943246
Merged-chr5-23114402-4	chr5	23114291	23114491	+	935.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029990, intron 2 of 2)	intron (NM_029990, intron 2 of 2)	319962.0	NR_040469	269630.0	Mm.425231	NR_040469	ENSMUSG00000073147	5031425E22Rik	-	RIKEN cDNA 5031425E22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-27397784-4	chr14	27397665	27397865	+	867.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027871, intron 9 of 10)	intron (NM_027871, intron 9 of 10)	-31069.0	NM_028945	218850.0	Mm.247767	NM_028945	ENSMUSG00000040651	Fam208a	4732418E12|4933409E02Rik|D14Abb1e|MommeD6	family with sequence similarity 208, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-79210633-1	chr3	79210533	79210733	+	919.0	f1_balb.idr	Intergenic	Intergenic	-2286.0	NR_045502	70924.0	Mm.444622	NR_045502	ENSMUSG00000104585	4921511C10Rik	-	RIKEN cDNA 4921511C10 gene	ncRNA	-0.371209252440364	-0.355126444827776	-0.360361366948729	-0.364422640311784	-0.370196101534659	-0.353950844213183	0.567679470802302	0.107986669072213	3.85287224097428	0.126391850998806	1
Merged-chr18-67873680-3	chr18	67873576	67873776	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027556, intron 41 of 45)	ORR1E|LTR|ERVL-MaLR	-59497.0	NM_172631	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	3.70576312607458	3.95211282262513	3.54992283489672	3.25132791819508	1.88885781778594	1.35307228783967	1.29487437868121	1.24163055876882	-4.74862561404387	3.25431397133629e-06	0.000176409302837769
Merged-chr2-30464589-2	chr2	30464489	30464689	+	896.375	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9610.0	NM_030244	72500.0	Mm.295464	NM_030244	ENSMUSG00000089762	Ier5l	2610524G09Rik	immediate early response 5-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5494873-3	chr17	5494817	5495017	+	758.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	2317.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70213102-3	chr11	70212989	70213189	+	860.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153081)	promoter-TSS (NM_153081)	-821.0	NM_153081	216867.0	Mm.289238	NM_153081	ENSMUSG00000040938	Slc16a11	AB041591|MCT 11|MNCb-2717	solute carrier family 16 (monocarboxylic acid transporters), member 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-38025123-4	chr18	38025042	38025242	+	836.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26173.0	NM_001205336	106952.0	Mm.247642	NM_139206	ENSMUSG00000024451	Arap3	Centd3|Drag1|E030006K04Rik|cnt-d3	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80071257-4	chr10	80071163	80071363	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359635, intron 5 of 31)	(T)n|Simple_repeat|Simple_repeat	4176.0	NM_001359636	216161.0	Mm.262102	NM_183426	ENSMUSG00000035673	Sbno2	BC019206|F730040C21|Sno|Stno	strawberry notch 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-21937442-4	chr3	21937354	21937554	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-139198.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28864927-2	chr7	28864827	28865027	+	845.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008496, intron 2 of 3)	intron (NM_008496, intron 2 of 3)	541.0	NM_008496	16858.0	Mm.20973	NM_008496	ENSMUSG00000053522	Lgals7	Galectin-7|Pig1	lectin, galactose binding, soluble 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-111797733-3	chr13	111797635	111797835	+	853.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011945, intron 1 of 19)	intron (NM_011945, intron 1 of 19)	11258.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	1.25734462722153	0.898085203029384	1.48351499178488	1.6318692347303	1.26734682501889	0.900422876077057	0.890013117447679	1.90364252655944	-0.00919910424224974	0.994820189486047	0.998431161219273
Merged-chr15-25644314-2	chr15	25644214	25644414	+	582.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019472, intron 1 of 40)	intron (NM_019472, intron 1 of 40)	21764.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-47716318-4	chr9	47716180	47716380	+	832.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	101928.0	NR_046048	100038460.0	Mm.447649	NR_046048		Gm10677	-	predicted gene 10677	ncRNA	2.48597964586261	2.79427331761916	2.89707500971729	2.09725050936779	1.63628300837886	2.81504824281301	3.36762882686738	2.52508139028301	0.254442579965263	0.752795643689752	0.998431161219273
Merged-chr5-67437665-3	chr5	67437560	67437760	+	935.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9861.0	NM_001164806	666938.0	Mm.101339	NM_001164806	ENSMUSG00000092060	Bend4	D330027G24Rik|EG666938	BEN domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-36705941-4	chr5	36705832	36706032	+	850.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9911.0	NM_001081232	320661.0	Mm.26480	NM_177221	ENSMUSG00000029190	D5Ertd579e	9030221A05Rik|A930018H20Rik|Kiaa0232	DNA segment, Chr 5, ERATO Doi 579, expressed	protein-coding	1.77520000874187	1.15929871591843	1.7831668489572	2.009901964118	1.79111647665779	2.51295037413265	1.13563462352531	2.9627013031746	1.38896105802074	0.196912319308773	0.678809506353684
Merged-chr7-16257992-4	chr7	16257890	16258090	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001173550, intron 1 of 1)	intron (NM_001173550, intron 1 of 1)	1348.0	NM_001173550	12273.0	Mm.247623	NM_007577	ENSMUSG00000049130	C5ar1	C5aR|C5r1|Cd88|D7Msu1	complement component 5a receptor 1	protein-coding	4.11416687084974	4.07879144334068	4.01051892285715	2.03889220814722	4.18860379118972	4.34935579830199	3.59635662178432	3.92119695697268	0.362366778439755	0.52124464394283	0.947836760490745
Merged-chr18-68220018-4	chr18	68219870	68220070	+	879.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172631, intron 3 of 5)	Lx5b|LINE|L1	-7976.0	NM_001357444	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-73141282-2	chr14	73141182	73141382	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1228.0	NM_001170694	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-87910785-4	chr3	87910737	87910937	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001331051, intron 1 of 6)	intron (NM_001331051, intron 1 of 6)	3987.0	NM_001331052	15191.0	Mm.292208	NM_008231	ENSMUSG00000004897	Hdgf	AI118077|D3Ertd299e	hepatoma-derived growth factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53065979-2	chr4	53065879	53066079	+	686.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_013454, exon 30 of 50)	exon (NM_013454, exon 30 of 50)	54099.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-41494872-3	chr12	41494777	41494977	+	930.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053122, intron 4 of 6)	intron (NM_053122, intron 4 of 6)	-8820.0	NM_010733	16981.0	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127521963-3	chr10	127521812	127522012	+	850.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028230, intron 1 of 11)	intron (NM_028230, intron 1 of 11)	532.0	NM_001252316	108037.0	Mm.29890	NM_028230	ENSMUSG00000025403	Shmt2	2700043D08Rik|AA408223|AA986903|SHMT	serine hydroxymethyltransferase 2 (mitochondrial)	protein-coding	0.124811282827776	0.0716770309239262	0.415824973280322	-0.112998900280401	0.130900351845127	-0.104741867027487	-0.108909153407899	0.0395911554137796	-1.35965081685335	0.518395623926008	1
Merged-chr15-64312818-4	chr15	64312715	64312915	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001276462)	promoter-TSS (NM_001276462)	-142.0	NM_001276463	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-36278920-4	chr2	36278817	36279017	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER44C|DNA|TcMar-Tigger	48491.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-79516399-4	chr15	79516381	79516581	+	930.0750119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134090)	promoter-TSS (NM_134090)	73.0	NM_134090	105785.0	Mm.298199	NM_134090	ENSMUSG00000010830	Kdelr3	AI173274	KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-98016984-4	chr5	98016902	98017102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133738, intron 3 of 16)	intron (NM_133738, intron 3 of 16)	13960.0	NM_133738	71914.0	Mm.24842	NM_133738	ENSMUSG00000029338	Antxr2	2310046B19Rik|AW561899|CMG-2|CMG2|cI-35	anthrax toxin receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-127770031-1	chr3	127769931	127770131	+	677.0	f1_c57bl6.idr	intron (NM_027808, intron 1 of 13)	intron (NM_027808, intron 1 of 13)	10496.0	NM_027808	71481.0	Mm.158704	NM_027808	ENSMUSG00000028028	Alpk1	8430410J10Rik|LAK	alpha-kinase 1	protein-coding	-0.560745440943411	-0.346132805599026	-0.367128298606523	-0.555536024307905	-0.559969823168735	0.211021926839331	-0.551508243440108	-0.554988438811182	1.50074494321044	0.56662660934104	1
Merged-chr5-120501287-2	chr5	120501202	120501402	+	655.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023625, intron 1 of 11)	RSINE1|SINE|B4	2321.0	NM_023625	71772.0	Mm.100065	NM_023625	ENSMUSG00000029598	Plbd2	1300012G16Rik|AU019810|P76	phospholipase B domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-24145268-4	chr18	24145164	24145364	+	773.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23445.0	NM_172625	225280.0	Mm.258973	NM_172625	ENSMUSG00000047989	Ino80c	D030070L09Rik	INO80 complex subunit C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-55049270-4	chr1	55049165	55049365	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3505.0	NM_026424	67876.0	Mm.281019	NM_026424	ENSMUSG00000025981	Coq10b	1500041J02Rik|1700030I21Rik|9530077A17Rik|AV002237|AW742641	coenzyme Q10B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-94546193-8	chr16	94546063	94546263	+	903.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19534.0	NM_007834	13185.0	Mm.7472	NM_007834	ENSMUSG00000022898	Dscr3	AW538125|Dcra	DSCR3 arrestin fold containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-67829046-2	chr5	67828946	67829146	+	638.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038999, intron 1 of 36)	intron (NM_001038999, intron 1 of 36)	18385.0	NM_009727	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-87304546-4	chr17	87304453	87304653	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028639, intron 3 of 19)	intron (NM_028639, intron 3 of 19)	21667.0	NM_028639	225049.0	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-113643636-2	chr6	113643536	113643736	+	748.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 1 of 11)	(TTTTG)n|Simple_repeat|Simple_repeat	5169.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69578139-2	chr11	69578039	69578239	+	642.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144824, intron 2 of 9)	B1_Mus2|SINE|Alu	1185.0	NM_144824	216853.0	Mm.31586	NM_144824	ENSMUSG00000041346	Wrap53	BC021790|Wdr79	WD repeat containing, antisense to Trp53	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180263650-4	chr1	180263558	180263758	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MEb|LINE|L1	-7358.0	NM_001128605	19165.0	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-43278096-3	chr7	43277999	43278199	+	849.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35201.0	NM_001357812	69930.0	Mm.45367	NM_027264	ENSMUSG00000012640	Zfp715	2610041B18Rik|mszf15	zinc finger protein 715	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106037608-3	chr11	106037451	106037651	+	641.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027946, intron 1 of 6)	intron (NM_027946, intron 1 of 6)	679.0	NM_027946	71833.0	Mm.307455	NM_027946	ENSMUSG00000049354	Dcaf7	1700012F10Rik|2610037L01Rik|C86529|HAN11|Wdr68	DDB1 and CUL4 associated factor 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-79950287-1	chr15	79950187	79950387	+	623.0	f1_balb.idr	Intergenic	Intergenic	-17641.0	NM_144811	52609.0	Mm.323442	NM_144811	ENSMUSG00000053411	Cbx7	1600014J01Rik|AI851678|D15Ertd417e	chromobox 7	protein-coding	-1.84446540621454	-1.66703209084435	-1.82297003008319	-1.83062437091832	-1.84230234211872	-1.6650127732569	-1.82086056797065	-1.82925424756847	0.037684011990387	0.991491645451152	1
Merged-chr6-7967622-3	chr6	7967498	7967698	+	940.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	122374.0	NM_052993	94192.0	Mm.102752	NM_052993	ENSMUSG00000042460	C1galt1	2210410E06Rik|AV284120|T-synthase	core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-28678717-1	chr19	28678617	28678817	+	581.0	f0_balb.idr	intron (NR_045330, intron 1 of 4)	intron (NR_045330, intron 1 of 4)	493.0	NR_045330	320176.0	Mm.406716	NR_045330	ENSMUSG00000097735	D930032P07Rik	-	RIKEN cDNA D930032P07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-160365658-4	chr2	160365516	160365716	+	943.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010658, exon 1 of 1)	3' UTR (NM_010658, exon 1 of 1)	1449.0	NM_010658	16658.0	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-89466529-3	chr1	89466407	89466607	+	830.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037136, intron 1 of 16)	MTEa|LTR|ERVL-MaLR	11696.0	NM_001037136	347722.0	Mm.291135	NM_178119	ENSMUSG00000055013	Agap1	Centg2|Ggap1|R75364|mKIAA1099	ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-184734421-4	chr1	184734248	184734448	+	818.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1855.0	NM_008250	15284.0	Mm.1347	NM_008250	ENSMUSG00000039377	Hlx	Hlx1	H2.0-like homeobox	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-38500232-3	chr6	38500122	38500322	+	894.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177185, intron 16 of 16)	intron (NM_177185, intron 16 of 16)	-7103.0	NR_106130	102466843.0		NR_106130	ENSMUSG00000098285	Mir7670	Gm27707|mmu-mir-7670	microRNA 7670	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-23981304-2	chr17	23981195	23981395	+	760.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6065.0	NM_013921	30943.0	Mm.142568	NM_013921	ENSMUSG00000024124	Prss30	2010015P21Rik|Disp|Disp1|Tmprss8	protease, serine 30	protein-coding	1.48880761827667	1.90001410454402	2.93279936436473	2.25658619786966	1.70214681997296	2.1119972767284	3.23427062021035	2.93812637527344	0.774894534202773	0.392636121052283	0.881258234308592
Merged-chr3-107595843-2	chr3	107595743	107595943	+	885.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007441, intron 1 of 3)	CpG	812.0	NM_007441	11694.0	Mm.10112	NM_007441	ENSMUSG00000014603	Alx3	-	aristaless-like homeobox 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36540747-3	chr18	36540636	36540836	+	777.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001271546, exon 20 of 22)	exon (NM_001271546, exon 20 of 22)	12584.0	NM_001271545	240215.0	Mm.135463	NM_172830	ENSMUSG00000024485	Slc4a9	AE4|D630003B07|D630024F24Rik	solute carrier family 4, sodium bicarbonate cotransporter, member 9	protein-coding	1.77556670626201	1.99117736219463	1.61894827642499	2.58230255173651	2.18361912554201	1.22191552214223	1.63052244211252	2.00042245868565	-0.627190911292789	0.543423572207669	0.955585568541497
Merged-chr14-120453790-4	chr14	120453711	120453911	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MERV1_LTR|LTR|ERV1	-24650.0	NM_029519	76108.0	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-84885428-2	chr1	84885328	84885528	+	590.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_025386, intron 2 of 3)	B3|SINE|B2	45587.0	NM_025386	66153.0	Mm.381192	NM_025386	ENSMUSG00000073633	Fbxo36	0610008D19Rik|1110020F21Rik|2410002G19Rik|D1Ertd757e	F-box protein 36	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97506480-4	chr6	97506383	97506583	+	949.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	-18663.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0.633613973850799	1.36112276310601	0.658774098856856	0.649413793508774	1.08066210511188	1.49321720637174	1.43020503590807	1.00637078238023	1.82540932754225	0.231459131202743	0.725835508669763
Merged-chr11-102435397-2	chr11	102435304	102435504	+	802.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_008175, exon 10 of 13)	exon (NM_008175, exon 10 of 13)	5082.0	NM_008175	14824.0	Mm.1568	NM_008175	ENSMUSG00000034708	Grn	Pgrn|epithelin	granulin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-16774061-2	chr19	16773961	16774161	+	666.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_173028, intron 1 of 71)	intron (NM_173028, intron 1 of 71)	6872.0	NM_173028	271564.0	Mm.211963	NM_173028	ENSMUSG00000046230	Vps13a	4930425F11|4930516E05Rik|4930543C13Rik|9930023P20|Chac|Chorein|D330038K10Rik|mKIAA0986	vacuolar protein sorting 13A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-114928477-2	chr6	114928377	114928577	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356371, intron 2 of 5)	URR1B|DNA|hAT-Charlie	-6656.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-73025292-4	chr11	73025206	73025406	+	685.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018883, intron 1 of 15)	intron (NM_018883, intron 1 of 15)	6298.0	NM_018883	55984.0	Mm.9998	NM_018883	ENSMUSG00000020785	Camkk1	AI846603|CaMKKalpha|Camkk	calcium/calmodulin-dependent protein kinase kinase 1, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167060872-4	chr2	167060779	167060979	+	964.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033196, intron 1 of 13)	intron (NM_001033196, intron 1 of 13)	-2055.0	NR_138563	68949.0	Mm.391959	NM_001081005		Zfas1	1500012F01Rik|Zfos1	zinc finger, NFX1-type containing 1, antisense RNA 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165960042-4	chr2	165959998	165960198	+	759.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32539.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-135793778-3	chr1	135793649	135793849	+	896.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5672.0	NM_021467	21952.0	Mm.44379	NM_021467	ENSMUSG00000026418	Tnni1	2700018B22Rik|AI747285|ssTnI	troponin I, skeletal, slow 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-20376125-1	chr6	20376025	20376225	+	543.0	f1_c57bl6.idr	Intergenic	ORR1A2|LTR|ERVL-MaLR	820783.0	NR_105789	102465192.0		NR_105789	ENSMUSG00000099149	Mir6370	Gm27480|mmu-mir-6370	microRNA 6370	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-132335-1	chr1	132235	132435	+	730.0	f1_c57bl6.idr	Intergenic	Intergenic	3539163.0	NM_001011874	497097.0	Mm.454496	NM_001011874	ENSMUSG00000051951	Xkr4	AY534250|Gm210|XRG4|mKIAA1889	X-linked Kx blood group related 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-57345415-2	chr14	57345315	57345515	+	792.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030004, intron 3 of 7)	(TG)n|Simple_repeat|Simple_repeat	53068.0	NM_030004	68631.0	Mm.25539	NM_030004	ENSMUSG00000021947	Cryl1	1110025H08Rik|A230106J09Rik|C85932|gul3dh	crystallin, lambda 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118234647-4	chr11	118234527	118234727	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	13965.0	NM_001112699	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-17052853-3	chr11	17052753	17052953	+	747.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029861, intron 1 of 2)	intron (NM_029861, intron 1 of 2)	919.0	NM_029861	380686.0	Mm.425666	NM_029861	ENSMUSG00000044629	Cnrip1	1500041B16Rik|3110054C06Rik|5330437A18Rik|AI854501|C2orf32	cannabinoid receptor interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139758278-2	chr5	139758178	139758378	+	568.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_026748, intron 31 of 46)	intron (NM_026748, intron 31 of 46)	9665.0	NR_106004	102465628.0		NR_106004	ENSMUSG00000098574	Mir7037	Gm27447|mmu-mir-7037	microRNA 7037	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-16502630-2	chr5	16502530	16502730	+	906.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50865.0	NM_001289460	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-12190357-2	chr18	12190257	12190457	+	596.25	f1_balb.idr|f1_c57bl6.idr	TTS (NM_029623)	TTS (NM_029623)	21627.0	NM_029623	76482.0	Mm.196596	NM_029623	ENSMUSG00000024410	3110002H16Rik	2400010D15Rik|Mic-1|Mic1|Rmc1|Wdr98	RIKEN cDNA 3110002H16 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-75152076-2	chr8	75151976	75152176	+	855.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42567.0	NM_008566	17218.0	Mm.5048	NM_008566	ENSMUSG00000005410	Mcm5	AA617332|AI324988|AL033333|Cdc46|Mcmd5|P1-CDC46	minichromosome maintenance complex component 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127572758-2	chr7	127572658	127572858	+	574.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026888)	promoter-TSS (NM_026888)	-590.0	NM_001360741	68961.0	Mm.274473	NM_026888	ENSMUSG00000030815	Phkg2	1500017I02Rik	phosphorylase kinase, gamma 2 (testis)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-160622086-4	chr2	160621985	160622185	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23812.0	NM_009408	21969.0	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-79891288-3	chr11	79891222	79891422	+	914.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	71065.0	NM_144826	216987.0	Mm.274961	NM_144826	ENSMUSG00000035575	Utp6	4732497O03Rik|HCA66	UTP6 small subunit processome component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-107868574-2	chr13	107868474	107868674	+	762.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 2 of 14)	intron (NM_145456, intron 2 of 14)	21490.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-30578254-4	chr12	30578161	30578361	+	928.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6182.0	NM_172049	211986.0	Mm.34035	NM_172049	ENSMUSG00000043061	Tmem18	BC024093	transmembrane protein 18	protein-coding	3.55906398759557	3.77368399569644	4.11364727815551	3.61843751773373	2.90291319276223	2.34025249913749	2.63033748786824	3.70053159682777	-1.20222424451686	0.0434513469114583	0.299041640675149
Merged-chr7-88207612-4	chr7	88207504	88207704	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70481.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125328480-4	chr6	125328378	125328578	+	775.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011324, intron 1 of 11)	intron (NM_011324, intron 1 of 11)	7138.0	NM_011324	20276.0	Mm.144114	NM_011324	ENSMUSG00000030340	Scnn1a	ENaC|SCNEA|Scnn1|mENaC	sodium channel, nonvoltage-gated 1 alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-111176729-3	chr5	111176607	111176807	+	970.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001267622, intron 5 of 22)	intron (NM_001267622, intron 5 of 22)	-153990.0	NM_001301644	56305.0	Mm.200516	NM_019640	ENSMUSG00000050017	Pitpnb	PI-TP-beta	phosphatidylinositol transfer protein, beta	protein-coding	2.39938338532098	1.43042325770227	1.65918607130397	2.53408374654697	2.42018896551744	2.47529452609646	2.91854333537715	3.39835681711078	1.58324957155491	0.0651445372558281	0.382365198868571
Merged-chr1-77281593-2	chr1	77281522	77281722	+	686.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	215146.0	NR_105770	102465180.0		NR_105770	ENSMUSG00000099141	Mir6352	Gm27481|mmu-mir-6352	microRNA 6352	ncRNA	0.380027821610471	-0.0409002172995357	-0.0452497229223611	-0.0485880445980651	0.195636092593119	0.292961987520734	-0.0442926036584196	0.348498739498371	1.07524576249432	0.620849322691566	1
Merged-chr7-45397262-2	chr7	45397162	45397362	+	800.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-1520.0	NR_126538	20637.0	Mm.216386	NM_009224	ENSMUSG00000063511	Snrnp70	2700022N21Rik|3200002N22Rik|AI325098|R74807|Rnu1p70|Rnulp70|Snrp70|Srnp70|U1-70|U1-70K	small nuclear ribonucleoprotein 70 (U1)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75769425-4	chr11	75769328	75769528	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007873, exon 9 of 9)	3' UTR (NM_007873, exon 9 of 9)	-26381.0	NR_136933	102641247.0	Mm.411386	NR_136932		Gm12339	-	predicted gene 12339	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-61683742-6	chr14	61683566	61683766	+	935.388916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1293.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119084125-3	chr11	119084014	119084214	+	896.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007625, intron 3 of 4)	intron (NM_007625, intron 3 of 4)	2123.0	NM_007625	12418.0	Mm.268070	NM_007625	ENSMUSG00000039989	Cbx4	MPc2|PC2	chromobox 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-58538930-2	chr9	58538830	58539030	+	720.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133983, intron 1 of 6)	ORR1D1|LTR|ERVL-MaLR	2010.0	NM_133983	102657.0	Mm.5356	NM_133983	ENSMUSG00000035914	Cd276	6030411F23Rik|AU016588|B7RP-2|B7h3	CD276 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-84715333-4	chr2	84715233	84715433	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144887)	promoter-TSS (NM_144887)	-169.0	NM_144887	228136.0	Mm.288508	NM_144887	ENSMUSG00000034075	Zdhhc5	1110032A17Rik|AI451382|Zisp	zinc finger, DHHC domain containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-98831334-4	chr12	98831227	98831427	+	922.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081191, intron 21 of 43)	intron (NM_001081191, intron 21 of 43)	60305.0	NM_001160108	75553.0	Mm.25549	NM_029334	ENSMUSG00000021012	Zc3h14	1010001P15Rik|1700016A15Rik|2700069A02Rik|AU014748	zinc finger CCCH type containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-92288191-2	chr4	92288091	92288291	+	547.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3A|LINE|L1	-140970.0	NM_027034	69314.0	Mm.55891	NM_027034	ENSMUSG00000028533	Izumo3	1700011H22Rik	IZUMO family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-3496516-2	chr6	3496416	3496616	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1877.0	NM_001167751	73288.0	Mm.45539	NM_024260	ENSMUSG00000001376	Vps50	1700034M03Rik|8430415E05Rik|BLM|C87205|Ccdc132|mKIAA1861	VPS50 EARP/GARPII complex subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69912747-2	chr11	69912647	69912847	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013414, intron 28 of 28)	ID_B1|SINE|B4	-1287.0	NM_001357906	56310.0	Mm.477738	NM_019726	ENSMUSG00000023170	Gps2	AI505953|GPS-2	G protein pathway suppressor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111293305-1	chr12	111293205	111293405	+	544.0	f1_balb.idr	3' UTR (NM_183016, exon 37 of 37)	3' UTR (NM_183016, exon 37 of 37)	22209.0	NM_033603	93835.0	Mm.197639	NM_033603	ENSMUSG00000021278	Amn	-	amnionless	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-11375450-4	chr19	11375330	11375530	+	897.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310331)	promoter-TSS (NM_001310331)	-58.0	NM_001310331	666907.0		NM_001310331	ENSMUSG00000101389	Ms4a4a	EG666907	membrane-spanning 4-domains, subfamily A, member 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-83244292-4	chr8	83244176	83244376	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111304, intron 9 of 20)	intron (NM_001111304, intron 9 of 20)	-46072.0	NM_009463	22227.0	Mm.4177	NM_009463	ENSMUSG00000031710	Ucp1	AI385626|Slc25a7|Ucp	uncoupling protein 1 (mitochondrial, proton carrier)	protein-coding	5.4464652228336	5.8411340986368	5.3255127558652	5.76895997159344	4.93337824871019	4.93913613245806	5.59105216503148	4.44161759825244	-0.663974718562405	0.0365840765744466	0.271448093816853
Merged-chr13-63563922-4	chr13	63563813	63564013	+	843.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001328514, intron 1 of 23)	CpG-3956	1822.0	NM_008957	19206.0	Mm.228798	NM_008957	ENSMUSG00000021466	Ptch1	A230106A15Rik|Ptc|Ptc1|Ptch|mes|wig	patched 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-53233745-2	chr11	53233645	53233845	+	843.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	66734.0	NM_008300	15525.0	Mm.239865	NM_008300	ENSMUSG00000020361	Hspa4	70kDa|AI317151|APG-2|Hsp110|Hsp70RY|mKIAA4025	heat shock protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-146676422-3	chr6	146676323	146676523	+	867.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19205.0	NR_046277	74925.0	Mm.386304	NR_046277	ENSMUSG00000085238	4930479D17Rik	-	RIKEN cDNA 4930479D17 gene	ncRNA	2.95333728905177	2.66048487011441	3.55284977098445	1.6816629320275	2.48980144166677	2.03392800211329	2.58935485167151	2.38378836906567	-0.963919583613084	0.234840730919688	0.731086761108682
Merged-chr1-36076407-2	chr1	36076307	36076507	+	661.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_015818, intron 1 of 1)	intron (NM_015818, intron 1 of 1)	8007.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-156434496-4	chr2	156434386	156434586	+	891.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013510, intron 1 of 21)	MTC|LTR|ERVL-MaLR	13577.0	NM_001291123	13821.0	Mm.20852	NM_013510	ENSMUSG00000027624	Epb41l1	4.1N|Epb4.1l1|NBL1|mKIAA0338	erythrocyte membrane protein band 4.1 like 1	protein-coding	2.57815136197713	1.83873722320981	3.64658877430738	3.53792658604711	4.8401361232842	4.62582942830665	4.17233891449152	5.01956465733729	2.21391092477664	3.67798528733953e-05	0.00136351293648396
Merged-chr12-105027895-4	chr12	105027806	105028006	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3235.0	NR_037229	100526471.0		NR_037229	ENSMUSG00000106366	Mir3069	mir-3069|mmu-mir-3069	microRNA 3069	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-67271126-1	chr18	67271026	67271226	+	654.0	f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-18097.0	NM_053261	114663.0	Mm.34079	NM_053261	ENSMUSG00000024525	Impa2	2210415D20Rik|AI326924|AW259601	inositol (myo)-1(or 4)-monophosphatase 2	protein-coding	0.981366453522221	0.618811855469993	0.230970638144395	0.225054826538955	0.376486182401765	1.0185406155219	0.232655601618576	0.226090777310223	-0.23671578017527	0.902464043133279	1
Merged-chr13-20208279-4	chr13	20208182	20208382	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 3 of 21)	intron (NM_080288, intron 3 of 21)	117775.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	4.63889612430551	5.13861211418826	3.56185002274492	5.06406256349765	4.30279558499072	5.13420195868004	5.25487645964301	4.3015284245565	0.10886180330883	0.799100806253033	0.998431161219273
Merged-chr10-121291850-1	chr10	121291750	121291950	+	702.0	f0_balb.idr	intron (NM_001361015, intron 8 of 12)	intron (NM_001361015, intron 8 of 12)	19546.0	NM_029057	74694.0	Mm.233833	NM_029057	ENSMUSG00000052302	Tbc1d30	4930505D03Rik|9530013E20Rik	TBC1 domain family, member 30	protein-coding	2.40368006890471	2.32765464987292	1.51338126596346	1.48018717936737	2.35008242757186	1.94484999457282	1.8834119423755	2.1968874129148	0.2422682541555	0.801316388238338	0.998431161219273
Merged-chr9-31018367-4	chr9	31018246	31018446	+	946.645874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-12298.0	NM_001115130	235132.0	Mm.239355	NM_172765	ENSMUSG00000047412	Zbtb44	6030404E16Rik|Btbd15|E230011F09	zinc finger and BTB domain containing 44	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-90255989-3	chr9	90255925	90256125	+	958.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 1 of 12)	intron (NM_194334, intron 1 of 12)	14744.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-148764898-3	chr1	148764804	148765004	+	847.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6C|LTR|ERVK	1157535.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-82865542-2	chr11	82865442	82865642	+	559.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164569, intron 1 of 7)	intron (NM_001164569, intron 1 of 7)	5202.0	NM_001164570	67338.0	Mm.341608	NM_026097	ENSMUSG00000020696	Rffl	1700051E09Rik|4930516L10Rik|BG080975|Carp2	ring finger and FYVE like domain containing protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-93712986-2	chr16	93712886	93713086	+	917.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_027293, intron 1 of 36)	intron (NM_027293, intron 1 of 36)	1079.0	NM_027293	70028.0	Mm.23230	NM_026700	ENSMUSG00000022946	Dopey2	0610038M01Rik|2610510B01Rik|AI503246|C21orf5|mKIAA0933	dopey family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-51209978-4	chr3	51209887	51210087	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-14460.0	NM_009834	12457.0	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-122275231-2	chr3	122275131	122275331	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_153806, exon 2 of 7)	exon (NM_153806, exon 2 of 7)	817.0	NM_153806	99480.0	Mm.398647	NM_153806	ENSMUSG00000039756	Dnttip2	4930588M11Rik|AA408582|AU014960|HSU15552	deoxynucleotidyltransferase, terminal, interacting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-31917517-4	chr12	31917428	31917628	+	957.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163126, intron 19 of 22)	intron (NM_001163126, intron 19 of 22)	32717.0	NM_177993	73389.0	Mm.390461	NM_153198	ENSMUSG00000002996	Hbp1	1700058O05Rik|BE629963|C330012F01Rik|C86454	high mobility group box transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-61125758-1	chr18	61125658	61125858	+	624.666687	f1_balb.idr	exon (NM_001037859, exon 15 of 22)	exon (NM_001037859, exon 15 of 22)	8290.0	NR_105949	102466212.0		NR_105949	ENSMUSG00000098389	Mir6983	Gm27496|mmu-mir-6983	microRNA 6983	ncRNA	-1.01707008444741	-0.993492043802862	-1.00764648088546	-1.01185324898415	-1.01628940292637	-0.0453400029982381	-1.00444222658639	-1.01130848519189	3.32945445846488	0.287936268400993	1
Merged-chr9-24509105-2	chr9	24509005	24509205	+	601.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-5965.0	NM_172920	244745.0	Mm.38526	NM_172920	ENSMUSG00000043067	Dpy19l1	1100001I19Rik|6030402K12|AI225861|AW558481	dpy-19-like 1 (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-58481922-4	chr16	58481788	58481988	+	837.950012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357433, intron 6 of 10)	intron (NM_001357433, intron 6 of 10)	41538.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76381020-4	chr15	76380986	76381186	+	860.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175457, intron 1 of 43)	CpG	573.0	NM_175457	223658.0	Mm.123240	NM_175457	ENSMUSG00000022558	Mroh1	D330001F17Rik|Heatr7a	maestro heat-like repeat family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-110382497-4	chr7	110382394	110382594	+	854.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177324, intron 17 of 40)	RMER10B|LTR|ERVL	160791.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171281793-4	chr1	171281695	171281895	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008911)	promoter-TSS (NM_008911)	-609.0	NM_008911	19044.0	Mm.266888	NM_008911	ENSMUSG00000062729	Ppox	Ppo	protoporphyrinogen oxidase	protein-coding	2.35072754779482	1.40276395554633	2.18298496149247	1.79288302443238	2.84385146559961	2.77121518594781	2.04191744593887	3.11259901317102	1.67123330293835	0.0549308300583742	0.344761543070179
Merged-chr15-102377155-7	chr15	102377037	102377237	+	915.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10169.0	NM_001348205	170574.0	Mm.263284	NM_130458	ENSMUSG00000060284	Sp7	6430578P22Rik|C22|Osx	Sp7 transcription factor 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80322213-2	chr10	80322113	80322313	+	710.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008793, intron 13 of 14)	intron (NM_008793, intron 13 of 14)	-1665.0	NM_025521	66374.0	Mm.383824	NM_025521	ENSMUSG00000020133	2310011J03Rik	AI452186|AW545358	RIKEN cDNA 2310011J03 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-110636084-1	chr5	110635984	110636184	+	591.0	f0_c57.idr	Intergenic	Intergenic	17298.0	NM_153570	100608.0	Mm.29960	NM_153570	ENSMUSG00000033294	Noc4l	AI326906	NOC4 like	protein-coding	2.56752614101622	2.32342167428956	1.62882057647864	2.16442800287107	1.5033481921713	1.01953720646708	0.993737016020626	0.970842201243871	-3.56907755125309	0.0052454292739553	0.069260448014214
Merged-chr13-111807661-1	chr13	111807561	111807761	+	1000.0	f1_balb.idr	intron (NM_011945, intron 1 of 19)	intron (NM_011945, intron 1 of 19)	1332.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	2.3334994214571	3.51579441889221	2.93871708223385	3.38137886742806	2.72772478453703	3.75604793344561	2.9620498666418	3.16313011238681	0.152834800001641	0.814533471962257	0.998431161219273
Merged-chr19-23132895-2	chr19	23132795	23132995	+	625.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	-8331.0	NM_010638	16601.0	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|Gm9971	Kruppel-like factor 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-78298300-4	chr10	78298210	78298410	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053014, intron 2 of 9)	intron (NM_053014, intron 2 of 9)	41897.0	NR_106119	102465765.0		NR_106119	ENSMUSG00000098885	Mir7659	Gm27433|mmu-mir-7659	microRNA 7659	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120783176-2	chr11	120783076	120783276	+	587.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009053, intron 3 of 7)	intron (NM_009053, intron 3 of 7)	1028.0	NM_009053	19719.0	Mm.871	NM_009053	ENSMUSG00000025158	Rfng	-	RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100434382-4	chr7	100434259	100434459	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001017985, intron 23 of 32)	intron (NM_001017985, intron 23 of 32)	-38632.0	NM_009464	22229.0	Mm.6254	NM_009464	ENSMUSG00000032942	Ucp3	AI645527|Slc25a9|UCP-3	uncoupling protein 3 (mitochondrial, proton carrier)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-44310842-2	chr15	44310742	44310942	+	626.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	114707.0	NM_013696	22045.0	Mm.309350	NM_013696	ENSMUSG00000038760	Trhr	TRH-R1	thyrotropin releasing hormone receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-6156183-4	chr7	6156074	6156274	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001013012)	promoter-TSS (NM_001013012)	-203.0	NM_001013012	67109.0	Mm.3254	NM_001013012	ENSMUSG00000046792	Zfp787	2210018M03Rik|Znf787	zinc finger protein 787	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-42679460-2	chr10	42679360	42679560	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172416, intron 1 of 5)	intron (NM_172416, intron 1 of 5)	544.0	NM_172416	14628.0	Mm.46636	NM_172416	ENSMUSG00000038280	Ostm1	1200002H13Rik|HSPC019|gl	osteopetrosis associated transmembrane protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-37648587-2	chr13	37648487	37648687	+	687.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A|LTR|ERVL-MaLR	-177451.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-151746205-2	chr3	151746098	151746298	+	892.0	f0_c57.idr|f1_c57bl6.idr	intron (NM_133871, intron 3 of 7)	ORR1E|LTR|ERVL-MaLR	3761.0	NM_133871	99899.0	Mm.30756	NM_133871	ENSMUSG00000028037	Ifi44	A430056A10Rik|AW261460|MTAP44|p44	interferon-induced protein 44	protein-coding	3.17314966457937	2.9870729603277	4.82987466439265	2.87709034086032	1.55696360447293	1.19360536529529	1.1319294878974	1.07515939248298	-5.49223075624424	4.33531429784369e-06	0.000225498992538419
Merged-chr12-85490581-4	chr12	85490490	85490690	+	991.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16700.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-29968321-4	chr14	29968238	29968438	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019979)	promoter-TSS (NM_019979)	-42.0	NM_019979	80795.0	Mm.104491	NM_019979	ENSMUSG00000042682	Selenok	1110001C03Rik|AA673253|HSPC030|Hsp30|Selk	selenoprotein K	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-61984480-4	chr15	61984388	61984588	+	929.8916630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010849)	promoter-TSS (NM_010849)	-853.0	NM_001177354	17869.0	Mm.2444	NM_010849	ENSMUSG00000022346	Myc	AU016757|Myc2|Niard|Nird|bHLHe39	myelocytomatosis oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-80800589-2	chr17	80800489	80800689	+	604.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-72564.0	NM_001290345	225028.0	Mm.311948	NM_001081357	ENSMUSG00000024242	Map4k3	4833416M01Rik|4833416M07Rik|9530052P13Rik|Glk|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1	mitogen-activated protein kinase kinase kinase kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96261778-2	chr3	96261730	96261930	+	644.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	1487.0	NM_033596	97122.0	Mm.227295	NM_033596	ENSMUSG00000091405	Hist2h4	H4|X04652	histone cluster 2, H4	protein-coding	1.46399466626179	1.88543391078554	1.1383398843487	1.75814413505865	1.83902347820994	1.17770144899135	0.930340013862854	1.11742531996629	-0.913555845847278	0.462460300714445	0.921194606787634
Merged-chr2-117996340-4	chr2	117996231	117996431	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_126479, intron 8 of 9)	intron (NR_126479, intron 8 of 9)	114871.0	NR_126479	329496.0	Mm.235844	NR_126479	ENSMUSG00000087203	Gm13986	C230060E24	predicted gene 13986	ncRNA	4.27278939994462	3.39428745837133	4.0082243933108	4.43812951803048	2.91750030230024	4.34494616135948	3.50574632911752	3.39468065109991	-0.642007446934079	0.223854462520164	0.715278663343895
Merged-chr4-53099379-2	chr4	53099279	53099479	+	775.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 7 of 49)	RSINE1|SINE|B4	60516.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85591239-2	chr12	85591139	85591339	+	728.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-7866.0	NM_001205052	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-119156553-1	chr2	119156453	119156653	+	540.0	f0_balb.idr	intron (NM_001033136, intron 1 of 12)	CpG	481.0	NM_001033136	67809.0	Mm.475909	NM_001033136	ENSMUSG00000070730	Rmdn3	1200015F23Rik|AI131757|Fam82a2|Ptpip51|RMD-3|Rmd3	regulator of microtubule dynamics 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4723587-6	chr16	4723491	4723691	+	818.277771	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2770.0	NM_001136066	15369.0	Mm.272866	NM_010443	ENSMUSG00000004070	Hmox2	HO-2|HO2	heme oxygenase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167057201-2	chr2	167057101	167057301	+	664.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033196, intron 2 of 13)	B3A|SINE|B2	-5733.0	NR_138563	68949.0	Mm.391959	NM_001081005		Zfas1	1500012F01Rik|Zfos1	zinc finger, NFX1-type containing 1, antisense RNA 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-112153960-3	chr5	112153890	112154090	+	688.277771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-52773.0	NR_045377	75569.0	Mm.243721	NR_045377	ENSMUSG00000101683	1700028D13Rik	-	RIKEN cDNA 1700028D13 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-32350671-4	chr17	32350569	32350769	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017476)	promoter-TSS (NM_017476)	-92.0	NM_017476	54194.0	Mm.281005	NM_017476	ENSMUSG00000002625	Akap8l	HAP95|Nakap95	A kinase (PRKA) anchor protein 8-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-119123590-2	chr4	119123490	119123690	+	562.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011400, intron 2 of 9)	intron (NM_011400, intron 2 of 9)	14845.0	NM_011400	20525.0	Mm.21002	NM_011400	ENSMUSG00000028645	Slc2a1	Glut-1|Glut1	solute carrier family 2 (facilitated glucose transporter), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30407396-4	chr2	30407293	30407493	+	994.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007760, intron 6 of 13)	intron (NM_007760, intron 6 of 13)	8355.0	NM_007760	12908.0	Mm.20396	NM_007760	ENSMUSG00000026853	Crat	AW107812|CARAT	carnitine acetyltransferase	protein-coding	2.30154865175406	3.52019627592124	3.0808360145587	1.33041021461045	2.86042320614026	2.33674869890919	1.65966454711194	2.32172064513273	-0.833725077272348	0.359313190117092	0.856306289008338
Merged-chr9-54560241-4	chr9	54560121	54560321	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019686)	promoter-TSS (NM_019686)	-142.0	NM_019686	56506.0	Mm.42192	NM_019686	ENSMUSG00000037493	Cib2	2810434I23Rik|AI449053	calcium and integrin binding family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-34846584-4	chr19	34846459	34846659	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114339, intron 1 of 6)	intron (NM_001114339, intron 1 of 6)	-25786.0	NR_029783	723826.0		NR_029783	ENSMUSG00000065594	Mir107	Mirn107|mir-107|mmu-mir-107	microRNA 107	ncRNA	4.22852704606964	3.38622109505125	4.7314722267579	3.27248699770488	3.53438190174357	4.28289878958451	3.17755582724841	3.47685527273882	-0.520147690551408	0.343185903288331	0.843915000140038
Merged-chr8-13158467-2	chr8	13158367	13158567	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001317353)	promoter-TSS (NM_001317353)	-694.0	NM_001317353	16783.0	Mm.16716	NM_010684	ENSMUSG00000031447	Lamp1	CD107a|LGP-120|LGP-A|Lamp-1|P2B|Perk	lysosomal-associated membrane protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118101787-2	chr11	118101687	118101887	+	642.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001167746, intron 21 of 80)	intron (NM_001167746, intron 21 of 80)	27432.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-124332936-1	chr8	124332836	124333036	+	814.0	f1_c57bl6.idr	intron (NM_139272, intron 10 of 15)	intron (NM_139272, intron 10 of 15)	101000.0	NM_171824	209966.0	Mm.234233	NM_171824	ENSMUSG00000050751	Pgbd5	2900019M05Rik|AI854313	piggyBac transposable element derived 5	protein-coding	-0.134893079830763	0.0853380380318956	-0.123398781828627	0.429440059605325	-0.133822233107144	-0.116576276529074	0.682925691688285	-0.12695554301347	0.373603754562447	0.871629342599121	1
Merged-chr10-4096492-3	chr10	4096409	4096609	+	703.849976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170785, intron 24 of 27)	ID4|SINE|ID	116611.0	NR_152620	102632515.0	Mm.416995	NR_152620	ENSMUSG00000111266	Gm30570	-	predicted gene, 30570	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-100677947-4	chr15	100677824	100678024	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033612, intron 6 of 7)	intron (NM_033612, intron 6 of 7)	-8424.0	NM_001270537	668218.0	Mm.451225	NM_001270537	ENSMUSG00000098112	Bin2	-	bridging integrator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134543310-2	chr6	134543210	134543410	+	729.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008514, intron 1 of 22)	intron (NM_008514, intron 1 of 22)	23603.0	NM_008514	16974.0	Mm.321990	NM_008514	ENSMUSG00000030201	Lrp6	C030016K15Rik|Cd|Gw|ska26|ska<m26Jus>|skax26	low density lipoprotein receptor-related protein 6	protein-coding	-0.390374265002166	-0.726194244466536	-0.728916269909244	-0.731003225042983	-0.484666820742292	-0.725578018986388	-0.728317557458998	-0.447164128355918	0.556101142619015	0.843108095614382	1
Merged-chr17-67182473-1	chr17	67182373	67182573	+	602.0	f0_balb.idr	intron (NM_001357625, intron 2 of 32)	Lx9|LINE|L1	-156238.0	NR_049205	100885844.0		NR_049205	ENSMUSG00000093508	Mir5709	Gm22041|mir-5709|mmu-mir-5709	microRNA 5709	ncRNA	-1.50811478453619	-0.99851579554048	-1.48484165847197	-1.49312904261012	-1.50577282675516	-1.47256636097272	-1.48255773576353	-1.49164560481169	-2.24133836997777	0.518237887813808	1
Merged-chr16-94269806-4	chr16	94269643	94269843	+	799.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360045, intron 2 of 10)	intron (NM_001360045, intron 2 of 10)	20548.0	NM_001360045	110948.0	Mm.30921	NM_139145	ENSMUSG00000040820	Hlcs	410I21.SP6|D16Jhu34	holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-88279392-5	chr1	88279195	88279395	+	752.200012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1716.0	NM_198652	381280.0	Mm.384762	NM_198652	ENSMUSG00000044783	Hjurp	6430706D22Rik|A730008H23Rik|C330011F01Rik|Gm975|Mfleg1	Holliday junction recognition protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6872421-2	chr19	6872321	6872521	+	848.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14210.0	NM_001081291	78317.0	Mm.329596	NM_198008	ENSMUSG00000047810	Ccdc88b	2610041P08Rik|Ccdc88	coiled-coil domain containing 88B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-95831741-4	chr16	95831625	95831825	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040485, exon 4 of 4)	non-coding (NR_040485, exon 4 of 4)	66988.0	NR_040485	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-115090201-4	chr13	115090094	115090294	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134058)	promoter-TSS (NM_134058)	-36.0	NM_134058	105083.0	Mm.486295	NM_134058	ENSMUSG00000042275	Pelo	AA409897|AI852218	pelota mRNA surveillance and ribosome rescue factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-57340904-2	chr17	57340804	57341004	+	651.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17782.0	NM_001355723	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-104602903-4	chr8	104602829	104603029	+	999.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252628, intron 17 of 17)	intron (NM_001252628, intron 17 of 17)	11461.0	NM_001024606	382051.0	Mm.290750	NM_001024606	ENSMUSG00000048371	Pdp2	4833426J09Rik|Gm1705|mKIAA1348	pyruvate dehyrogenase phosphatase catalytic subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125501414-3	chr6	125501341	125501541	+	958.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6681.0	NM_007657	12527.0	Mm.210676	NM_007657	ENSMUSG00000030342	Cd9	Tspan29	CD9 antigen	protein-coding	2.53128516804029	2.62428108509282	2.26579248733251	1.39180818966791	3.22882967095098	2.1962128537119	2.28411515812627	3.27606643390779	1.13213298998671	0.181350517201265	0.654717203223905
Merged-chr15-95791743-4	chr15	95791681	95791881	+	966.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 1 of 19)	intron (NM_175344, intron 1 of 19)	938.0	NM_001253813	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-96758336-1	chr5	96758236	96758436	+	580.0	f0_balb.idr	intron (NM_175473, intron 62 of 73)	intron (NM_175473, intron 62 of 73)	-35049.0	NM_013470	11745.0	Mm.7214	NM_013470	ENSMUSG00000029484	Anxa3	Anx3	annexin A3	protein-coding	0.774984345985682	0.496731142469111	0.486215192757305	0.478000373210874	1.29228571236992	1.19838593381375	1.35696551950688	0.47944210394877	3.20360553441094	0.0719018569975241	0.404012193391374
Merged-chr5-32139693-5	chr5	32139616	32139816	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008037, intron 1 of 3)	intron (NM_008037, intron 1 of 3)	3244.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	3.37875057491504	2.75893815801432	3.58710387070091	2.27745973610089	3.14390832496509	3.25288727674106	3.61377690161776	2.28989902090794	0.087685787613294	0.897993634121916	0.998431161219273
Merged-chr5-54024964-3	chr5	54024916	54025116	+	683.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081103, intron 1 of 11)	intron (NM_001081103, intron 1 of 11)	26493.0	NM_001081103	116873.0	Mm.265985	NM_054083	ENSMUSG00000039156	Stim2	-	stromal interaction molecule 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-149773688-3	chr4	149773602	149773802	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027460, intron 1 of 6)	CpG	565.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-16896282-4	chr12	16896178	16896378	+	758.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009072, intron 1 of 32)	intron (NM_009072, intron 1 of 32)	1300.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10555785-4	chr19	10555697	10555897	+	943.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001277861)	promoter-TSS (NM_001277861)	-34.0	NM_001277860	68642.0	Mm.31236	NM_026798	ENSMUSG00000024667	Tmem216	1110017C22Rik|2810441K11Rik|4921533J23Rik|A930021F15Rik|AI482550	transmembrane protein 216	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-94615749-2	chr16	94615649	94615849	+	793.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113389, intron 2 of 11)	RLTR11B|LTR|ERVK	4330.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81359548-2	chr10	81359448	81359648	+	597.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028657, intron 1 of 9)	intron (NM_028657, intron 1 of 9)	2057.0	NM_028657	73822.0	Mm.182281	NM_028657	ENSMUSG00000034854	Mfsd12	C19orf28|F630110N24Rik|Wdt1|gr	major facilitator superfamily domain containing 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-120228686-2	chr10	120228566	120228766	+	771.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025431, intron 2 of 2)	intron (NM_025431, intron 2 of 2)	1606.0	NM_025431	66225.0	Mm.291755	NM_025431	ENSMUSG00000020224	Llph	1190005P17Rik	LLP homolog, long-term synaptic facilitation (Aplysia)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-87809320-4	chr6	87809219	87809419	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104478, intron 1 of 2)	intron (NR_104478, intron 1 of 2)	438.0	NM_133717	69834.0	Mm.37380	NM_133717	ENSMUSG00000030055	Rab43	1810048P08Rik|2500004H21Rik|AW490415	RAB43, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-43470529-1	chr7	43470429	43470629	+	545.0	f1_balb.idr	intron (NM_001290316, intron 9 of 9)	B3|SINE|B2	7296.0	NM_001290316	75690.0	Mm.30200	NM_001290316	ENSMUSG00000070604	Vsig10l	-	V-set and immunoglobulin domain containing 10 like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-164835571-5	chr2	164835479	164835679	+	917.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038492, intron 6 of 14)	intron (NM_001038492, intron 6 of 14)	1806.0	NM_008906	19025.0	Mm.359633	NM_008906	ENSMUSG00000017760	Ctsa	AU019505|PPCA|Ppgb	cathepsin A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-3493275-4	chr5	3493184	3493384	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 5 of 7)	intron (NM_009873, intron 5 of 7)	-50549.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-97312724-2	chr7	97312624	97312824	+	766.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177412, intron 8 of 9)	intron (NM_001177412, intron 8 of 9)	13240.0	NM_001177412	244144.0	Mm.297541	NM_001177412	ENSMUSG00000035713	Usp35	Gm1088|Gm493	ubiquitin specific peptidase 35	protein-coding	0.117854404802867	0.779905005442606	0.728177954855253	0.126525484056448	0.119147185649693	0.791377486683524	0.133211279841837	0.127435354877036	-0.905769125829899	0.671142435119468	1
Merged-chr15-43383190-3	chr15	43383094	43383294	+	664.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	93842.0	NR_046064	100038728.0	Mm.244168	NR_046064	ENSMUSG00000072592	Gm10373	-	predicted gene 10373	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88548575-2	chr3	88548475	88548675	+	913.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016899)	promoter-TSS (NM_016899)	-296.0	NM_016899	53868.0	Mm.26994	NM_016899	ENSMUSG00000008601	Rab25	AV012978	RAB25, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-111066071-4	chr11	111065989	111066189	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008425)	promoter-TSS (NM_008425)	-75.0	NM_008425	16518.0	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding	5.85814757051673	6.44290632451644	5.45556945205869	5.86337450737379	5.84479178526608	6.28121571068238	5.63656933028141	5.84637982321322	-0.029651204767906	0.91183108104109	0.998431161219273
Merged-chr15-57859488-1	chr15	57859388	57859588	+	664.0	f0_balb.idr	Intergenic	Intergenic	32930.0	NM_024207	67819.0	Mm.289387	NM_024207	ENSMUSG00000022365	Derl1	1110021N07Rik|AI195141|AW551338|Derlin-1	Der1-like domain family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-12129271-2	chr13	12129171	12129371	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22326.0	NM_023868	20191.0	Mm.239871	NM_023868	ENSMUSG00000021313	Ryr2	9330127I20Rik|RYR-2	ryanodine receptor 2, cardiac	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-67115649-2	chr17	67115557	67115757	+	728.958374	f0_balb.idr|f1_balb.idr	intron (NM_001357625, intron 2 of 32)	B3|SINE|B2	-89422.0	NR_049205	100885844.0		NR_049205	ENSMUSG00000093508	Mir5709	Gm22041|mir-5709|mmu-mir-5709	microRNA 5709	ncRNA	1.72481819987332	2.15991249360625	1.36744019759316	2.67308141212368	3.71691741672084	2.97970761088526	2.87678954420019	2.1930387005958	1.92952109997179	0.0236366091234766	0.201039319501791
Merged-chr13-73803538-4	chr13	73803434	73803634	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360694, intron 17 of 24)	intron (NM_001360694, intron 17 of 24)	39837.0	NM_011390	20499.0	Mm.275800	NM_011390	ENSMUSG00000017756	Slc12a7	AA408796|D13Ertd261e|Kcc4	solute carrier family 12, member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30683840-2	chr2	30683740	30683940	+	576.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-5829.0	NR_136917	665635.0	Mm.450149	NR_136917		Gm14486	-	predicted gene 14486	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-160234052-4	chr1	160233951	160234151	+	900.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038621, intron 6 of 8)	intron (NM_001038621, intron 6 of 8)	-21159.0	NM_009786	12301.0	Mm.10702	NM_009786	ENSMUSG00000014226	Cacybp	SIP	calcyclin binding protein	protein-coding	2.95377731727056	1.4505188169546	1.40304258485629	2.20965451262865	3.27535776022366	3.34121189487038	2.44625593605703	3.05891801849167	1.68550394301256	0.052414171106868	0.334910861389138
Merged-chr16-58685732-4	chr16	58685577	58685777	+	843.31665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15469.0	NM_007757	12892.0	Mm.291519	NM_007757	ENSMUSG00000022742	Cpox	CPX|Cpo|HCP|cac|nct	coproporphyrinogen oxidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-119806736-2	chr4	119806638	119806838	+	699.5	f0_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-7940.0	NM_010657	16656.0	Mm.302758	NM_010657	ENSMUSG00000028634	Hivep3	2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3	human immunodeficiency virus type I enhancer binding protein 3	protein-coding	3.84015186648821	3.11546510344256	2.91142157022453	2.60757387282814	2.23039378029355	1.90218888256675	3.20943965123477	2.49345481398032	-1.18282533092607	0.111023817180253	0.52126279318319
Merged-chr5-97962037-3	chr5	97961939	97962139	+	981.861084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133738, intron 11 of 16)	intron (NM_133738, intron 11 of 16)	68923.0	NM_133738	71914.0	Mm.24842	NM_133738	ENSMUSG00000029338	Antxr2	2310046B19Rik|AW561899|CMG-2|CMG2|cI-35	anthrax toxin receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81182871-4	chr10	81182754	81182954	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001190474)	promoter-TSS (NM_001190474)	-153.0	NM_001190474	13144.0	Mm.10294	NM_007828	ENSMUSG00000034974	Dapk3	ZIPK|dlk	death-associated protein kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-3174025-9	chr11	3173891	3174091	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030207, intron 6 of 32)	intron (NM_030207, intron 6 of 32)	19472.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-93339192-2	chr15	93339092	93339292	+	716.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2257.0	NM_024189	67057.0	Mm.4714	NM_024189	ENSMUSG00000022634	Yaf2	2810021M11Rik	YY1 associated factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91479246-2	chr16	91479146	91479346	+	737.099976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5969.0	NM_010508	15975.0	Mm.502	NM_010508	ENSMUSG00000022967	Ifnar1	Ifar|Ifnar|Ifrc|Infar	interferon (alpha and beta) receptor 1	protein-coding	1.40507206313839	1.02572234446387	0.796218078843477	1.5873759334538	1.41824734537977	1.03217220329732	0.799030701652613	1.59694652993507	0.034878143948654	0.979957803854774	0.998431161219273
Merged-chr12-11265966-4	chr12	11265882	11266082	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177331)	promoter-TSS (NM_177331)	96.0	NM_025695	67241.0	Mm.173953	NM_025695	ENSMUSG00000020608	Smc6	2810489L22Rik|3830418C19Rik|AA990493|AU018782|AW742439|SMC-6|Smc6l1|mKIAA4103	structural maintenance of chromosomes 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55800764-3	chr19	55800660	55800860	+	694.56665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001331146, intron 4 of 14)	intron (NM_001331146, intron 4 of 14)	58950.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16892209-4	chr7	16892123	16892323	+	989.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010320, exon 1 of 4)	5' UTR (NM_010320, exon 1 of 4)	437.0	NM_010320	14709.0	Mm.103770	NM_010320	ENSMUSG00000063594	Gng8	G(y)8	guanine nucleotide binding protein (G protein), gamma 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-38450407-2	chr16	38450307	38450507	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_007414, exon 2 of 4)	exon (NM_007414, exon 2 of 4)	2282.0	NM_007414	11544.0	Mm.20047	NM_007414	ENSMUSG00000002844	Adprh	Arh1	ADP-ribosylarginine hydrolase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88740064-4	chr3	88739961	88740161	+	838.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	23207.0	NR_028056	19769.0	Mm.4009	NM_009069	ENSMUSG00000028057	Rit1	RIBB|ROC1|Rit	Ras-like without CAAX 1	protein-coding	0.980824380181677	0.711481799153474	1.33342847659562	1.39438470973698	0.677315887515002	0.714116110311475	1.34605465187252	1.49940839900702	-0.0611079360894347	0.96771155447896	0.998431161219273
Merged-chr19-4094748-2	chr19	4094648	4094848	+	796.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2603.0	NM_026373	52004.0	Mm.29609	NM_026373	ENSMUSG00000024856	Cdk2ap2	5830466O21Rik|D19Ertd144e|Doc-1r	CDK2-associated protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-52100506-5	chr14	52100224	52100424	+	757.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360183, intron 1 of 8)	MER5A|DNA|hAT-Charlie	3697.0	NM_001360178	15381.0	Mm.427321	NM_016884	ENSMUSG00000060373	Hnrnpc	AL022939|D14Wsu171e|Hnrpc|Hnrpc1|Hnrpc2|hnRNPC1|hnRNPC2|hnrnp-C	heterogeneous nuclear ribonucleoprotein C	protein-coding	3.47204459082295	2.78818666759122	2.42022245049209	2.19107215261092	2.88388658350636	3.22991231137824	2.08308834832766	3.32576663713164	0.246024211088849	0.740668206797622	0.998431161219273
Merged-chr11-62221652-2	chr11	62221552	62221752	+	681.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001281818, exon 15 of 15)	3' UTR (NM_001281818, exon 15 of 15)	-27332.0	NM_007413	11541.0	Mm.40740	NM_007413	ENSMUSG00000018500	Adora2b	A2BAR|A2BR|A2b|AA2BR|AI480866|AI605384	adenosine A2b receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30167241-3	chr7	30167126	30167326	+	847.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011980, intron 1 of 1)	intron (NM_011980, intron 1 of 1)	2515.0	NM_011980	26465.0	Mm.446516	NM_011980	ENSMUSG00000037029	Zfp146	OZF|Znf146	zinc finger protein 146	protein-coding	3.98015401457083	3.71200772659933	3.96036913620253	4.21803943756683	2.57991401900023	1.64423302653588	1.57583308376026	3.26586073017621	-2.40464110301527	0.000434245632934559	0.00998099445200927
Merged-chr10-69213662-4	chr10	69213533	69213733	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001331193)	promoter-TSS (NM_001331193)	439.0	NM_001252638	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-67457757-4	chr18	67457626	67457826	+	845.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7123.0	NM_144867	225655.0	Mm.221420	NM_144867	ENSMUSG00000024530	Prelid3a	A230074A19Rik|BC019561|Slmo1	PRELI domain containing 3A	protein-coding	-0.802593673557486	-0.793094718163527	-0.341243695287107	-0.798614554876962	-0.802002397560642	-0.791090896558683	-0.332078011335404	-0.79819523297655	0.040958530317021	0.989184000390448	1
Merged-chr10-66932161-2	chr10	66932061	66932261	+	591.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-11777.0	NR_138561	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-60978966-2	chr18	60978866	60979066	+	767.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177407, intron 15 of 17)	MIRc|SINE|MIR	15412.0	NM_001286809	12322.0	Mm.131530	NM_009792	ENSMUSG00000024617	Camk2a	CaMKII|R74975|mKIAA0968	calcium/calmodulin-dependent protein kinase II alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-117389078-4	chr5	117388976	117389176	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028128)	promoter-TSS (NM_028128)	-53.0	NM_028128	72151.0	Mm.27997	NM_028128	ENSMUSG00000029363	Rfc5	2610020K06Rik|2610209F07Rik|36.5kDa|36kDa|Recc5	replication factor C (activator 1) 5	protein-coding	4.0400630089126	4.51738396893404	3.63926220642352	4.00878079844865	4.90332388367244	5.13772762769003	5.22101545882145	4.74183779586673	1.16679842932678	0.0019489912544007	0.0326592137853347
Merged-chr5-62893207-4	chr5	62893100	62893300	+	725.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	79377.0	NM_001170705	100322896.0	Mm.479821	NM_001170705	ENSMUSG00000090326	Dthd1	Gm17384	death domain containing 1	protein-coding	1.36198849805031	0.840247884408908	1.36101662195766	1.55389558692497	0.797651701081075	1.89371107593906	1.37266233762745	1.0169532722379	0.156763086984201	0.907342132437138	0.998431161219273
Merged-chr8-13602727-2	chr8	13602597	13602797	+	957.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 4 of 23)	intron (NM_009025, intron 4 of 23)	-40236.0	NM_001080781	66501.0	Mm.46136	NM_025601	ENSMUSG00000031452	1700029H14Rik	-	RIKEN cDNA 1700029H14 gene	protein-coding	0.594087059816438	0.24439571344876	0.895944906129852	0.394687638229862	0.226753058247297	0.599303220074618	0.56552272494258	0.234305803953948	-0.947186012198966	0.609154797866505	1
Merged-chr15-96802173-2	chr15	96802073	96802273	+	628.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-102445.0	NM_175121	67760.0	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-93649675-2	chr2	93649575	93649775	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007442, intron 1 of 3)	intron (NM_007442, intron 1 of 3)	7241.0	NM_007442	11695.0	Mm.389389	NM_007442	ENSMUSG00000040310	Alx4	lst	aristaless-like homeobox 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30945115-2	chr2	30945015	30945215	+	808.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur2|SINE|Alu	-7886.0	NM_133673	30934.0	Mm.249164	NM_133673	ENSMUSG00000026848	Tor1b	2610016F05Rik|DQ1|torsinB	torsin family 1, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-8313921-4	chr12	8313807	8314007	+	891.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021429, intron 1 of 6)	intron (NM_021429, intron 1 of 6)	474.0	NM_021429	58240.0	Mm.309954	NM_021429	ENSMUSG00000020605	Hs1bp3	-	HCLS1 binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99782162-4	chr7	99782076	99782276	+	984.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15012.0	NM_146356	258353.0	Mm.377450	NM_146356	ENSMUSG00000073997	Olfr521	MOR101-2	olfactory receptor 521	protein-coding	0.212380990211348	-0.25509047058336	-0.259858812270985	-0.263541374283945	-0.118679450180548	0.491091814991362	-0.258806671103046	-0.262897801310032	1.0587197897877	0.660891120011074	1
Merged-chr7-43525556-2	chr7	43525456	43525656	+	756.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	7615.0	NM_001111058	12489.0	Mm.140157	NM_021293	ENSMUSG00000004609	Cd33	Siglec-3|gp67	CD33 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135080597-1	chr4	135080497	135080697	+	540.0	f1_balb.idr	Intergenic	Intergenic	-40048.0	NM_019732	12399.0	Mm.378894	NM_019732	ENSMUSG00000070691	Runx3	AML2|Cbfa3|Pebp2a3	runt related transcription factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-30423212-2	chr9	30423112	30423312	+	704.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4117.0	NM_028874	102607.0	Mm.35084	NM_028874	ENSMUSG00000031993	Snx19	3526401K03Rik|AI195321|AI848208|mKIAA0254	sorting nexin 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-107726817-2	chr13	107726717	107726917	+	585.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_145456, exon 15 of 15)	exon (NM_145456, exon 15 of 15)	39420.0	NR_045900	72257.0	Mm.234155	NR_045900	ENSMUSG00000102000	1700006H21Rik	-	RIKEN cDNA 1700006H21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-87143326-3	chr17	87143224	87143424	+	907.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35645.0	NM_019654	56468.0	Mm.126885	NM_019654	ENSMUSG00000037104	Socs5	1810018L08Rik|Cish5|mKIAA0671	suppressor of cytokine signaling 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-56745239-4	chr19	56745160	56745360	+	940.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22888.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-103310609-4	chr15	103310536	103310736	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030720)	promoter-TSS (NM_030720)	-198.0	NM_030720	80910.0	Mm.160369	NM_030720	ENSMUSG00000063234	Gpr84	EX33	G protein-coupled receptor 84	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-148894749-2	chr6	148894649	148894849	+	716.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_181541, intron 2 of 18)	intron (NM_181541, intron 2 of 18)	1488.0	NM_001301351	232560.0	Mm.150568	NM_181541	ENSMUSG00000030309	Caprin2	C1qdc1|Eeg1|rng140	caprin family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-25381324-4	chr10	25381221	25381421	+	904.841675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358754, intron 1 of 16)	L1MC4|LINE|L1	21523.0	NM_001358751	13822.0	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-110932521-4	chr12	110932408	110932608	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175336, intron 9 of 20)	B1F|SINE|Alu	43244.0	NM_001081057	104859.0	Mm.35583	NM_175336	ENSMUSG00000021275	Tecpr2	4930573I19Rik|AI604920|mKIAA0297	tectonin beta-propeller repeat containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167977734-2	chr2	167977634	167977834	+	946.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011201, exon 9 of 9)	3' UTR (NM_011201, exon 9 of 9)	32859.0	NM_001080708	69553.0	Mm.68454	NM_001080708	ENSMUSG00000074577	Ripor3	2310033K02Rik|Fam65c|Gm124	RIPOR family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-58606930-4	chr6	58606833	58607033	+	957.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011920, intron 1 of 15)	intron (NM_011920, intron 1 of 15)	10261.0	NM_011920	26357.0	Mm.333096	NM_011920	ENSMUSG00000029802	Abcg2	ABC15|ABCP|AI428558|BCRP|Bcrp1|MXR|MXR1	ATP binding cassette subfamily G member 2 (Junior blood group)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-52604933-4	chr12	52604822	52605022	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2600.0	NR_045910	73278.0	Mm.396209	NR_045910	ENSMUSG00000100315	1700031P21Rik	-	RIKEN cDNA 1700031P21 gene	ncRNA	3.77861983277223	2.67737956942827	4.64668119751386	3.71600352806409	3.86546171630461	4.05258637060112	4.28098326250684	3.66079671419861	0.132516612221201	0.803310707112139	0.998431161219273
Merged-chr17-43579911-4	chr17	43579820	43580020	+	918.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013737, intron 1 of 11)	intron (NM_013737, intron 1 of 11)	11469.0	NM_013737	27226.0	Mm.9277	NM_013737	ENSMUSG00000023913	Pla2g7	PAF-AH|R75400	phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	protein-coding	2.02498174923939	3.05650072507119	1.30273767130615	1.79378048944501	1.5664119432079	1.58602541157922	1.04560402631805	1.65380855221742	-1.94688151610604	0.0721688756376321	0.404743924852124
Merged-chr6-134259772-3	chr6	134259674	134259874	+	681.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 6 of 8)	intron (NM_001303102, intron 6 of 8)	-136555.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	2.19667909173111	1.01606985660272	0.98495825420647	0.959813599563477	2.97674324881337	2.42878813588108	1.27230351221772	1.92248697405531	2.15571622755074	0.075197873714847	0.415733236325226
Merged-chr2-172401245-4	chr2	172401109	172401309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080820, intron 1 of 6)	intron (NM_001080820, intron 1 of 6)	7415.0	NM_001276423	320664.0	Mm.210195	NM_001033538	ENSMUSG00000074570	Cass4	F730031O20Rik	Cas scaffolding protein family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-17839330-4	chr5	17839225	17839425	+	851.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159558, intron 1 of 15)	Lx5b|LINE|L1	-3429.0	NM_007643	12491.0	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 molecule	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-46845801-4	chr7	46845711	46845911	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_102727)	promoter-TSS (NR_102727)	7.0	NR_102727	16828.0	Mm.29324	NM_010699	ENSMUSG00000063229	Ldha	Ldh1|Ldhm|l7R2	lactate dehydrogenase A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-142901065-2	chr5	142900965	142901165	+	561.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5689.0	NM_007393	11461.0	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-17947401-4	chr10	17947296	17947496	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033432, intron 1 of 3)	CpG	671.0	NM_001033432	380629.0	Mm.276430	NM_001033432	ENSMUSG00000039879	Heca	Gm869|HDC|HDCL	hdc homolog, cell cycle regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-71877349-2	chr7	71877248	71877448	+	628.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32347.0	NR_130995	78156.0	Mm.243818	NR_130995	ENSMUSG00000108669	4930441H08Rik	-	RIKEN cDNA 4930441H08 gene	ncRNA	1.5940688040927	0.922851329349296	1.6242811909314	0.888880962237409	0.867040910946417	1.5543814366966	2.14934466814112	1.90436857404674	1.27560114356418	0.33798114578175	0.838291990164575
Merged-chr12-54825399-2	chr12	54825299	54825499	+	693.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-29737.0	NM_026998	72183.0	Mm.28240	NM_026998	ENSMUSG00000005656	Snx6	2010006G21Rik|2610032J07Rik|2810425K19Rik|AU018928|C85963	sorting nexin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-64485544-4	chr1	64485445	64485645	+	898.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-47259.0	NM_009952	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-43170546-2	chr15	43170446	43170646	+	576.5	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_172815, exon 1 of 6)	5' UTR (NM_172815, exon 1 of 6)	272.0	NM_001357957	239405.0	Mm.193274	NM_172815	ENSMUSG00000051920	Rspo2	2610028F08Rik|AA673245|D430027K22|ftls	R-spondin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-66846606-4	chr14	66846514	66846714	+	991.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009955, intron 3 of 13)	intron (NM_009955, intron 3 of 13)	21986.0	NM_009955	12934.0	Mm.352648	NM_009955	ENSMUSG00000022048	Dpysl2	AI851130|Crmp2|DRP2|Musunc33|TOAD-64|Ulip2	dihydropyrimidinase-like 2	protein-coding	6.2352936079216	6.04880290693937	6.44443642390333	4.74404075313092	5.64720401185467	5.79483797510907	5.23198832591743	4.72181229765016	-0.665852012648143	0.0569686967705108	0.353052904882535
Merged-chr9-52168763-5	chr9	52168588	52168788	+	860.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162921)	promoter-TSS (NM_001162921)	-577.0	NM_001162921	244871.0	Mm.295686	NM_001162921	ENSMUSG00000035164	Zc3h12c	A230108E06|C230027N18Rik|mKIAA1726	zinc finger CCCH type containing 12C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-3897111-4	chr13	3897035	3897235	+	888.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019671, intron 3 of 11)	intron (NM_019671, intron 3 of 11)	-3554.0	NM_001047159	56349.0	Mm.22261	NM_019671	ENSMUSG00000021215	Net1	Net1a|mNET1	neuroepithelial cell transforming gene 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45073749-2	chr7	45073649	45073849	+	896.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163684, intron 2 of 8)	intron (NM_001163684, intron 2 of 8)	11320.0	NM_025533	66394.0	Mm.272139	NM_025533	ENSMUSG00000003421	Nosip	2310061K06Rik|CGI-25	nitric oxide synthase interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-44982614-4	chr2	44982446	44982646	+	818.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001355289)	TTS (NM_001355289)	40631.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-50532337-2	chr16	50532237	50532437	+	719.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_040379, intron 1 of 5)	B2_Mm2|SINE|B2	3835.0	NR_040379	619312.0	Mm.427671	NR_040379		G730013B05Rik	linc-Cblb|linc1610	RIKEN cDNA G730013B05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43464808-2	chr4	43464708	43464908	+	644.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur2|SINE|Alu	-10182.0	NM_007654	12517.0	Mm.188157	NM_007654	ENSMUSG00000028459	Cd72	CD72c|Ly-19|Ly-32|Ly-m19|Lyb-2	CD72 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-74807886-2	chr1	74807786	74807986	+	745.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15867.0	NM_009518	22409.0	Mm.5130	NM_009518	ENSMUSG00000026167	Wnt10a	-	wingless-type MMTV integration site family, member 10A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-31857796-3	chr9	31857679	31857879	+	699.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013800, intron 2 of 3)	intron (NM_013800, intron 2 of 3)	55506.0	NM_013800	12023.0	Mm.261044	NM_013800	ENSMUSG00000032033	Barx2	2310006E12Rik|Barx2b	BarH-like homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-72478073-1	chr4	72477973	72478173	+	668.0	f0_balb.idr	Intergenic	Intergenic	276829.0	NR_027923	68285.0	Mm.37541	NR_027923		C630043F03Rik	AI851307	RIKEN cDNA C630043F03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-36904923-1	chr17	36904823	36905023	+	665.5	f0_balb.idr	intron (NM_146077, intron 3 of 7)	intron (NM_146077, intron 3 of 7)	6793.0	NM_146077	224762.0	Mm.213417	NM_146077	ENSMUSG00000058063	Trim31	BC026666|HCG1|HCGI|RNF	tripartite motif-containing 31	protein-coding	-1.50516312850466	-1.47383092096757	-1.48330603914065	-1.19291545288017	-1.3546714919122	-1.47177762333306	-1.48116108007494	-1.48969600423451	-0.709809768853011	0.840354194586821	1
Merged-chr2-132091872-2	chr2	132091772	132091972	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355431, intron 3 of 6)	ORR1D2|LTR|ERVL-MaLR	53236.0	NM_001355431	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-124021887-3	chr9	124021775	124021975	+	908.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009914)	promoter-TSS (NM_009914)	-96.0	NM_009914	12771.0	Mm.57050	NM_009914	ENSMUSG00000035448	Ccr3	CC-CKR3|CKR3|Cmkbr1l2|Cmkbr3	chemokine (C-C motif) receptor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-25726646-2	chr17	25726546	25726746	+	923.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145409, intron 3 of 21)	intron (NM_145409, intron 3 of 21)	769.0	NM_145409	214901.0	Mm.102540	NM_145409	ENSMUSG00000019214	Chtf18	6030457M03Rik|CTF18|Chl12	CTF18, chromosome transmission fidelity factor 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-60528015-4	chr3	60527938	60528138	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253711, intron 1 of 7)	intron (NM_001253711, intron 1 of 7)	26859.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-43707971-3	chr10	43707870	43708070	+	746.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38188.0	NR_040581	69443.0	Mm.484042	NR_040581	ENSMUSG00000111422	1700027J07Rik	-	RIKEN cDNA 1700027J07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165324172-2	chr2	165324072	165324272	+	726.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_080287, intron 1 of 20)	intron (NM_080287, intron 1 of 20)	2307.0	NM_080287	140579.0	Mm.35064	NM_080287	ENSMUSG00000017670	Elmo2	1190002F24Rik|CED-12	engulfment and cell motility 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-42089305-4	chr10	42089214	42089414	+	880.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70932.0	NM_001034858	213402.0	Mm.211320	NM_001034858	ENSMUSG00000071324	Armc2	2610018I05Rik	armadillo repeat containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-78060272-2	chr2	78060167	78060367	+	787.5	f0_balb.idr|f0_c57.idr	intron (NR_108098, intron 1 of 6)	intron (NR_108098, intron 1 of 6)	9090.0	NR_108098	78158.0	Mm.78473	NR_108098	ENSMUSG00000085431	4930440I19Rik	-	RIKEN cDNA 4930440I19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35015651-2	chr17	35015551	35015751	+	776.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347347)	promoter-TSS (NM_001347347)	-928.0	NM_138582	27762.0	Mm.56895	NM_138582	ENSMUSG00000007030	Vwa7	C6orf27|D17H6S56E-3|G7c|NG37	von Willebrand factor A domain containing 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81112718-4	chr15	81112626	81112826	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001082536, intron 2 of 13)	intron (NM_001082536, intron 2 of 13)	-7679.0	NM_153049	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-43624143-3	chr19	43624045	43624245	+	764.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11820.0	NM_008699	18089.0	Mm.56994	NM_008699	ENSMUSG00000044220	Nkx2-3	Nkx-2.3|Nkx2.3|tinman	NK2 homeobox 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-34099780-1	chr8	34099680	34099880	+	593.0	f1_c57bl6.idr	intron (NM_001293759, intron 2 of 7)	intron (NM_001293759, intron 2 of 7)	8034.0	NM_001293758	22428.0	Mm.150373	NM_011722	ENSMUSG00000031516	Dctn6	AU044699|WS-3|p27	dynactin 6	protein-coding	-2.05752322593321	-2.15521190974092	-2.16307242109104	-2.16952927915413	-2.17938029103484	-2.15350850414045	-2.16129297361887	-2.16837350464794	-0.683654500252594	0.846597994014493	1
Merged-chr8-35625016-2	chr8	35624926	35625126	+	613.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081279, intron 1 of 2)	intron (NM_001081279, intron 1 of 2)	-36006.0	NR_040376	100504714.0	Mm.381744	NR_040376	ENSMUSG00000097357	Gm16793	-	predicted gene, 16793	ncRNA	0.636530582819388	1.24170950842419	0.475291333736463	0.464880740887949	1.26851115131574	0.49144117045874	1.77279931813285	0.46671364874438	1.54840461007531	0.359066729492221	0.856306289008338
Merged-chr9-40815266-3	chr9	40815176	40815376	+	886.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	14003.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	0.827991988645117	1.33114212978131	1.91197964939635	1.84938459511334	0.831700446527673	0.888932815747995	1.45624981413551	1.94829605764129	-0.566366397121171	0.681467421549061	0.995882295196263
Merged-chr16-52038434-2	chr16	52038334	52038534	+	707.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033238, intron 2 of 17)	intron (NM_001033238, intron 2 of 17)	6885.0	NM_001033238	208650.0	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-46157235-2	chr17	46157135	46157335	+	640.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-3684.0	NM_025649	66591.0	Mm.272024	NM_025649	ENSMUSG00000034509	Mad2l1bp	0610009D16Rik|2510031P20Rik|AU018945|AW550977|C76045|CMT2A|CMT2B|Mad2lbp|mKIAA0110	MAD2L1 binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-73624024-2	chr15	73623924	73624124	+	659.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033219, intron 1 of 7)	intron (NM_001033219, intron 1 of 7)	720.0	NM_001033219	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-75155879-3	chr5	75155780	75155980	+	678.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001083316)	promoter-TSS (NM_001083316)	-286.0	NM_001083316	18595.0	Mm.221403	NM_011058	ENSMUSG00000029231	Pdgfra	AI115593|CD140a|Pdgfr-2	platelet derived growth factor receptor, alpha polypeptide	protein-coding	1.15061021514873	1.34428916712938	0.549674877097632	1.13009531264965	1.25146514856466	0.562137312567749	0.551930363428845	0.543131373452671	-1.41587859408816	0.405182765686959	0.890471881068287
Merged-chr11-8660987-4	chr11	8660875	8661075	+	924.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 1 of 30)	B1F|SINE|Alu	3560.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	5.15069813852686	4.45058552476198	5.09436150785563	5.41048251973368	5.56243208401464	2.43571656386886	4.7667361573108	5.8790867321124	0.072612000089965	0.933159966492706	0.998431161219273
Merged-chr4-134634137-3	chr4	134634046	134634246	+	783.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207237, intron 2 of 11)	intron (NM_207237, intron 2 of 11)	-66295.0	NR_105829	102465216.0		NR_105829	ENSMUSG00000099289	Mir6403	Gm27992|mmu-mir-6403	microRNA 6403	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-105703610-4	chr4	105703519	105703719	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-537594.0	NR_151521	105244641.0	Mm.404914	NR_151521		Gm12724	-	predicted gene 12724	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-102497435-4	chr5	102497337	102497537	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146161, intron 1 of 8)	intron (NM_146161, intron 1 of 8)	16046.0	NM_029270	231532.0	Mm.440191	NM_029270	ENSMUSG00000057315	Arhgap24	0610025G21Rik	Rho GTPase activating protein 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119299056-2	chr11	119298919	119299119	+	974.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_138669, intron 1 of 11)	B1_Mus2|SINE|Alu	1024.0	NM_138669	192170.0	Mm.197555	NM_138669	ENSMUSG00000025580	Eif4a3	2400003O03Rik|Ddx48|eIF4A-III|mKIAA0111	eukaryotic translation initiation factor 4A3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-34280134-2	chr10	34280034	34280234	+	883.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2056.0	NM_009433	22110.0	Mm.20445	NM_009433	ENSMUSG00000047514	Tspyl1	Tspyl	testis-specific protein, Y-encoded-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-24608906-3	chr2	24608778	24608978	+	826.399963	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042528, intron 44 of 46)	intron (NM_001042528, intron 44 of 46)	-133279.0	NM_011040	18510.0	Mm.2533	NM_011040	ENSMUSG00000026976	Pax8	Pax-8	paired box 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119043223-2	chr11	119043123	119043323	+	610.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2310.0	NM_013926	30951.0	Mm.99953	NM_013926	ENSMUSG00000025578	Cbx8	Pc3	chromobox 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-74283188-2	chr1	74283088	74283288	+	789.666687	f1_balb.idr|f1_c57bl6.idr	exon (NM_001190444, exon 3 of 11)	exon (NM_001190444, exon 3 of 11)	1550.0	NM_001190444	227290.0	Mm.379371	NM_146110	ENSMUSG00000006299	Aamp	AU040907|Aamp-rs	angio-associated migratory protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122650960-2	chr5	122650860	122651060	+	759.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001284402, intron 1 of 12)	B1_Mus2|SINE|Alu	536.0	NM_001284402	18439.0	Mm.42026	NM_011027	ENSMUSG00000029468	P2rx7	AI467586|P2X(7)|P2X7R	purinergic receptor P2X, ligand-gated ion channel, 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-152180146-2	chr4	152180046	152180246	+	569.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133348, intron 1 of 8)	intron (NM_133348, intron 1 of 8)	2046.0	NM_133348	70025.0	Mm.296191	NM_133348	ENSMUSG00000028937	Acot7	2410041A17Rik|Ach1|Act|Bach|CTE-IIa|Cte-II|Lach1	acyl-CoA thioesterase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-108919035-4	chr12	108918945	108919145	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177602, intron 2 of 6)	intron (NM_177602, intron 2 of 6)	24773.0	NM_177602	212198.0	Mm.342082	NM_177602	ENSMUSG00000040877	Wdr25	B930090D16Rik	WD repeat domain 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-29816442-2	chr2	29816342	29816542	+	950.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011989, exon 13 of 13)	3' UTR (NM_011989, exon 13 of 13)	-10947.0	NM_026615	68205.0	Mm.20273	NM_026615	ENSMUSG00000069020	Urm1	2900073H19Rik	ubiquitin related modifier 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115486270-2	chr5	115486170	115486370	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-1786.0	NM_133760	75387.0	Mm.332616	NM_133760	ENSMUSG00000029524	Sirt4	4930596O17Rik	sirtuin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70545898-3	chr8	70545787	70545987	+	568.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007924, intron 1 of 11)	intron (NM_007924, intron 1 of 11)	6212.0	NM_007924	13716.0	Mm.271973	NM_007924	ENSMUSG00000070002	Ell	Ell1|Men	elongation factor RNA polymerase II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-148050577-3	chr2	148050483	148050683	+	889.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3614.0	NM_010446	15376.0	Mm.938	NM_010446	ENSMUSG00000037025	Foxa2	HNF3-beta|HNF3beta|Hnf-3b|Hnf3b|Tcf-3b|Tcf3b	forkhead box A2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-110368719-4	chr13	110368619	110368819	+	793.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11547.0	NM_177713	238875.0	Mm.30533	NM_177713	ENSMUSG00000046006	Gapt	9830130M13Rik	Grb2-binding adaptor, transmembrane	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95232538-4	chr3	95232458	95232658	+	893.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172395, exon 3 of 5)	exon (NM_172395, exon 3 of 5)	3615.0	NM_001038708	57912.0	Mm.28189	NM_172395	ENSMUSG00000046722	Cdc42se1	1300002M12Rik|AW558204|Cdcse1|SCIP1|Spec1	CDC42 small effector 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-85134390-4	chr16	85134292	85134492	+	860.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198825, intron 1 of 15)	intron (NM_001198825, intron 1 of 15)	39315.0	NM_001198825	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-40904801-3	chr14	40904687	40904887	+	942.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11822.0	NM_177816	328381.0	Mm.235694	NM_177816	ENSMUSG00000037833	Sh2d4b	A430109M18Rik|D030001E08	SH2 domain containing 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-186855729-3	chr1	186855615	186855815	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-106357.0	NM_026041	67223.0	Mm.289841	NM_026041	ENSMUSG00000001305	Rrp15	2810430M08Rik|5430437H21Rik	ribosomal RNA processing 15 homolog (S. cerevisiae)	protein-coding	0.771884711621235	0.366066329782871	2.69959312403528	1.59963534482771	0.293651685758925	0.371288260438231	0.347515702980589	0.32615435262307	-5.39703410687981	0.000929646925137991	0.0183452365259961
Merged-chr8-106022784-2	chr8	106022684	106022884	+	838.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301176, intron 2 of 14)	intron (NM_001301176, intron 2 of 14)	-11298.0	NM_028038	71986.0	Mm.307515	NM_028038	ENSMUSG00000045538	Ddx28	2410004K13Rik|AI449652|Mddx28	DEAD (Asp-Glu-Ala-Asp) box polypeptide 28	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-155220914-1	chr4	155220814	155221014	+	824.5	f0_balb.idr	intron (NM_011385, intron 1 of 6)	intron (NM_011385, intron 1 of 6)	1621.0	NM_011385	20481.0	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-59374646-1	chr4	59374546	59374746	+	609.0	f1_c57bl6.idr	intron (NM_001163288, intron 8 of 16)	intron (NM_001163288, intron 8 of 16)	63987.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-129436237-4	chr6	129436150	129436350	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175526, intron 2 of 5)	intron (NM_175526, intron 2 of 5)	15750.0	NM_001347475	243653.0	Mm.131289	NM_175526	ENSMUSG00000033082	Clec1a	5930406N14Rik	C-type lectin domain family 1, member a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-114969892-3	chr6	114969795	114969995	+	896.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356371)	promoter-TSS (NM_001356371)	-692.0	NM_001356371	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-78236547-2	chr16	78236447	78236647	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	18907.0	NR_045698	100503619.0	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-95798452-1	chr15	95798352	95798552	+	549.0	f1_c57bl6.idr	intron (NM_175344, intron 1 of 19)	ORR1B2|LTR|ERVL-MaLR	7609.0	NM_001253813	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-111063037-4	chr9	111062943	111063143	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5525.0	NM_001302376	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	4.37060969959065	4.16152991996103	4.51983104277425	4.44964256743968	5.0821432662119	4.6994571717031	5.20167102828959	5.34916091668077	0.887564801690558	0.0102001468581896	0.110319737383917
Merged-chr18-65581760-2	chr18	65581660	65581860	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361053)	promoter-TSS (NM_001361053)	-658.0	NM_001361053	328977.0	Mm.286232	NM_207255	ENSMUSG00000042439	Zfp532	C530030I18Rik|Znf532|mKIAA1629	zinc finger protein 532	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-25862961-4	chr11	25862868	25863068	+	844.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027973, intron 2 of 5)	intron (NR_027973, intron 2 of 5)	-339272.0	NR_105791	102466154.0		NR_105791	ENSMUSG00000099015	Mir6372	Gm27358|mmu-mir-6372	microRNA 6372	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-31131037-4	chr7	31130935	31131135	+	999.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153431, intron 18 of 18)	ORR1E|LTR|ERVL-MaLR	-4012.0	NM_011322	20266.0	Mm.1418	NM_011322	ENSMUSG00000019194	Scn1b	-	sodium channel, voltage-gated, type I, beta	protein-coding	3.10211912973405	3.81060527813852	2.83995595576358	1.55761808373544	3.95236720388603	2.26098133283508	4.21204055242958	3.8979386990648	1.07709387917567	0.139218167741647	0.582908112665358
Merged-chr4-95053367-4	chr4	95053278	95053478	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1156.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-90265767-4	chr7	90265682	90265882	+	863.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183293)	promoter-TSS (NM_183293)	-350.0	NR_111924	75338.0	Mm.487222	NM_029256	ENSMUSG00000030617	Ccdc83	4930549K11Rik|4930554C01Rik|4932423M01Rik	coiled-coil domain containing 83	protein-coding	1.93615297934811	3.30364919826707	3.19320987952681	2.69260081166793	1.95343838707928	2.53061251971442	3.06722937480959	1.38217575576955	-0.945099270864849	0.2750118406296	0.779431196190694
Merged-chr11-43375167-4	chr11	43375071	43375271	+	983.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029558)	promoter-TSS (NR_029558)	-710.0	NR_029558	387164.0		NR_029558	ENSMUSG00000065601	Mir146	Mirn146|miR-146a|mmu-mir-146	microRNA 146	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90965684-3	chr2	90965528	90965728	+	840.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001244891, intron 2 of 14)	intron (NM_001244891, intron 2 of 14)	25231.0	NM_017368	13046.0	Mm.29495	NM_017368	ENSMUSG00000005506	Celf1	1600010O03Rik|AA407467|Brunol2|CUG-BP|CUG-BP1|CUGBP|Cugbp1|D2Wsu101e|HNAB50|NAB50	CUGBP, Elav-like family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-25115469-3	chr2	25115369	25115569	+	660.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_T|LINE|L1	-20264.0	NM_172204	241275.0	Mm.218774	NM_172204	ENSMUSG00000036805	Noxa1	NY-CO-31|SDCCAG31	NADPH oxidase activator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-92398912-4	chr16	92398775	92398975	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081549, intron 1 of 3)	intron (NM_001081549, intron 1 of 3)	1203.0	NM_019466	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127539454-2	chr10	127539350	127539550	+	924.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 87 of 88)	intron (NM_008512, intron 87 of 88)	-4891.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	2.3730068276219	3.03223503563586	2.4352239411214	2.50524611983251	2.7227802387488	2.8250673765311	2.95316153547357	3.81838767865592	1.02303559103838	0.143497403118927	0.591443869750575
Merged-chr3-28781196-4	chr3	28781081	28781281	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177586)	promoter-TSS (NM_177586)	-96.0	NM_177586	208691.0	Mm.193670	NM_177586	ENSMUSG00000050192	Eif5a2	9630038B20|eIF5AII	eukaryotic translation initiation factor 5A2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125165686-4	chr6	125165564	125165764	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_008084, exon 1 of 7)	5' UTR (NM_008084, exon 1 of 7)	109.0	NM_008084	14433.0	Mm.304088	NM_008084	ENSMUSG00000057666	Gapdh	Gapd	glyceraldehyde-3-phosphate dehydrogenase	protein-coding	4.31034611000616	4.93102419233387	3.75622793213827	4.85377143753371	4.73568325902166	4.38778878246124	5.11545564802502	4.97961621852683	0.367847775787618	0.347294970803907	0.84749391044853
Merged-chr7-122094721-2	chr7	122094629	122094829	+	604.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360744, intron 2 of 4)	ORR1B1|LTR|ERVL-MaLR	7119.0	NR_153798	70316.0	Mm.3014	NM_028177	ENSMUSG00000030869	Ndufab1	2210401F17Rik|2310039H15Rik|2610003B19Rik|8kDa|9130423F15Rik|ACP|CI-SDAP|SDAP	NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-42451182-2	chr5	42451082	42451282	+	599.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	383222.0	NR_131130	433882.0	Mm.319353	NR_131130	ENSMUSG00000067285	Gm16223	EG433882	predicted gene 16223	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88106154-2	chr3	88106054	88106254	+	685.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033484, intron 22 of 37)	MTD|LTR|ERVL-MaLR	24103.0	NM_001033484	404710.0	Mm.331133	NM_001033484	ENSMUSG00000028068	Iqgap3	AI593484|D030034H08	IQ motif containing GTPase activating protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-71771289-1	chr9	71771189	71771389	+	617.5	f1_balb.idr	5' UTR (NM_001304362, exon 1 of 19)	5' UTR (NM_001304362, exon 1 of 19)	313.0	NM_026599	68178.0	Mm.99961	NM_026599	ENSMUSG00000032232	Cgnl1	4933421H10Rik|9930020M10Rik|AI503810|Jacop	cingulin-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89437566-4	chr3	89437445	89437645	+	911.883301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146131, intron 1 of 10)	intron (NM_146131, intron 1 of 10)	841.0	NM_146131	229534.0	Mm.65906	NM_146131	ENSMUSG00000042613	Pbxip1	4732463H20Rik	pre B cell leukemia transcription factor interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-34687329-4	chr4	34687233	34687433	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_011895, exon 1 of 8)	5' UTR (NM_011895, exon 1 of 8)	105.0	NM_011895	24060.0	Mm.281885	NM_011895	ENSMUSG00000028293	Slc35a1	AA408150|AI314851	solute carrier family 35 (CMP-sialic acid transporter), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-139390048-2	chr7	139389948	139390148	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183144, intron 1 of 15)	intron (NM_183144, intron 1 of 15)	939.0	NM_001127363	212111.0	Mm.28308	NM_183144	ENSMUSG00000025477	Inpp5a	-	inositol polyphosphate-5-phosphatase A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-105589511-4	chr11	105589431	105589631	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181071)	promoter-TSS (NM_181071)	-455.0	NM_181071	77097.0	Mm.22501	NM_175492	ENSMUSG00000053580	Tanc2	3526402J09Rik|5730590C14Rik	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107965144-2	chr9	107965044	107965244	+	552.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011634, intron 10 of 14)	intron (NM_011634, intron 10 of 14)	-10423.0	NM_023738	74153.0	Mm.277125	NM_023738	ENSMUSG00000032596	Uba7	1300004C08Rik|Ube1l	ubiquitin-like modifier activating enzyme 7	protein-coding	0.14308699833733	-0.4029467024331	-0.407034519936116	-0.410185795590388	0.23538489478427	-0.402024723613418	-0.406133248771914	-0.409635437177391	0.2990407923107	0.912511439530963	1
Merged-chr11-101640248-2	chr11	101640148	101640348	+	951.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	12299.0	NM_025654	66599.0	Mm.41449	NM_025654	ENSMUSG00000010362	Rdm1	2410008M22Rik|AW212028|Rad52b	RAD52 motif 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-88798683-3	chr18	88798580	88798780	+	799.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	95527.0	NM_018821	54607.0	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-23432308-2	chr1	23432208	23432408	+	622.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49133.0	NM_001081079	70155.0	Mm.28013	NM_001081079	ENSMUSG00000026158	Ogfrl1	2210417C17Rik	opioid growth factor receptor-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-89360880-2	chr6	89360780	89360980	+	726.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008881, intron 1 of 31)	intron (NM_008881, intron 1 of 31)	1733.0	NM_008881	18844.0	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-31343821-1	chr15	31343721	31343921	+	554.0	f0_balb.idr	intron (NM_027496, intron 1 of 3)	intron (NM_027496, intron 1 of 3)	23938.0	NM_001357923	67434.0	Mm.102470	NM_026153	ENSMUSG00000022237	Ankrd33b	0610012A05Rik|3021401C12Rik|5730557B15Rik	ankyrin repeat domain 33B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-35725887-3	chr8	35725782	35725982	+	753.888916	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	100677.0	NM_027998	71908.0	Mm.37817	NM_027998	ENSMUSG00000055976	Cldn23	2310014B08Rik	claudin 23	protein-coding	4.66448291276156	3.63215738080427	4.10003405402175	3.99039507803622	3.49672163208096	3.55923176012136	3.21507506214766	4.45059359412302	-0.531901111477098	0.294912512458844	0.798191705447
Merged-chr2-35979833-4	chr2	35979735	35979935	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029774)	promoter-TSS (NM_029774)	-211.0	NM_029774	74410.0	Mm.21591	NM_028921	ENSMUSG00000026885	Ttll11	4932702F08Rik|4933424A20Rik|AU043211|D2Ertd624e	tubulin tyrosine ligase-like family, member 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-61749423-4	chr11	61749312	61749512	+	858.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144806, intron 5 of 11)	intron (NM_144806, intron 5 of 11)	12676.0	NM_144806	212627.0	Mm.27703	NM_144806	ENSMUSG00000020528	Prpsap2	A230054F23Rik	phosphoribosyl pyrophosphate synthetase-associated protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-75819181-2	chr18	75819082	75819282	+	814.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145356)	promoter-TSS (NM_145356)	-996.0	NM_145356	207259.0	Mm.159332	NM_145356	ENSMUSG00000044646	Zbtb7c	B230208J24Rik|Kr-pok|Zbtb36	zinc finger and BTB domain containing 7C	protein-coding	2.56698352865528	2.23162049777683	2.15492412894203	2.09330007488181	2.52219089941883	1.29542120340459	2.17212854566041	1.24075625651339	-0.794692680940954	0.439158614630583	0.909130714404946
Merged-chr13-99324404-2	chr13	99324292	99324492	+	575.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_026873, intron 8 of 9)	intron (NM_026873, intron 8 of 9)	20286.0	NM_026873	68927.0	Mm.276502	NM_026873	ENSMUSG00000021650	Ptcd2	1190005P08Rik	pentatricopeptide repeat domain 2	protein-coding	1.21738751690718	0.930778305227931	1.13404224832659	1.86438615878433	1.68578529941738	1.67972748483675	1.94292057835588	0.902516024138212	0.87835978860614	0.49360865808086	0.935679785535167
Merged-chr13-119310195-4	chr13	119310102	119310302	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	98809.0	NM_008710	18115.0	Mm.132584	NM_008710	ENSMUSG00000116207	Nnt	4930423F13Rik|AI323702|BB168308	nicotinamide nucleotide transhydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-102510353-4	chr15	102510251	102510451	+	925.866699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163643, intron 1 of 15)	MIRb|SINE|MIR	349.0	NM_001358844	26404.0	Mm.172897	NM_009582	ENSMUSG00000023050	Map3k12	DLK|MUK|Zpk	mitogen-activated protein kinase kinase kinase 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-144880287-2	chr5	144880187	144880387	+	731.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038627, intron 17 of 17)	intron (NM_001038627, intron 17 of 17)	16529.0	NR_106006	102465629.0		NR_106006	ENSMUSG00000098822	Mir7039	Gm27824|mmu-mir-7039	microRNA 7039	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-83691007-2	chr12	83690933	83691133	+	765.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_008943, intron 1 of 11)	B4A|SINE|B4	2470.0	NM_008943	19164.0	Mm.998	NM_008943	ENSMUSG00000019969	Psen1	Ad3h|PS-1|PS1|S182	presenilin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-62491067-3	chr10	62490985	62491185	+	822.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4280.0	NM_001358543	30930.0	Mm.260703	NM_133672	ENSMUSG00000020078	Vps26a	AA407240|HB58|Vps26	VPS26 retromer complex component A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-12147390-3	chr13	12147292	12147492	+	819.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39096.0	NR_045170	328186.0	Mm.188154	NM_183202		Gm10336	B330003H21	predicted gene 10336	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114671174-2	chr11	114671074	114671274	+	671.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001048058, intron 2 of 3)	intron (NM_001048058, intron 2 of 3)	2393.0	NM_001048058	67671.0	Mm.238817	NM_023372	ENSMUSG00000057322	Rpl38	0610025G13Rik|Rbt|Ts|Tss	ribosomal protein L38	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-57526721-3	chr16	57526628	57526828	+	738.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 4 of 4)	ID_B1|SINE|B4	-22514.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-64739878-2	chr9	64739778	64739978	+	616.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2122.0	NM_017382	53869.0	Mm.1387	NM_017382	ENSMUSG00000004771	Rab11a	-	RAB11A, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-142606183-3	chr2	142606082	142606282	+	765.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	295282.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-86658585-2	chr17	86658485	86658685	+	600.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_011104)	TTS (NM_011104)	-95279.0	NM_010137	13819.0	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126476761-2	chr8	126476661	126476861	+	566.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1696.0	NM_001159907	212728.0	Mm.482479	NM_001159907	ENSMUSG00000090290	Tarbp1	Gm17296|Gm179	TAR RNA binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-24709867-2	chr16	24709767	24709967	+	855.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 7 of 12)	(TTTG)n|Simple_repeat|Simple_repeat	-11988.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-72844422-4	chr12	72844334	72844534	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	73331.0	NM_029444	75801.0	Mm.242892	NM_029444	ENSMUSG00000021098	4930447C04Rik	4921504I02Rik|A930035O15Rik|Six6OS|Six6as|Six6os1	RIKEN cDNA 4930447C04 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-24083008-3	chr7	24082875	24083075	+	678.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289637, intron 1 of 3)	intron (NM_001289637, intron 1 of 3)	1078.0	NM_001289637	210135.0	Mm.32254	NM_172483	ENSMUSG00000057101	Zfp180	2310040I01Rik|AI852378|D130011P11|HHZ168	zinc finger protein 180	protein-coding	0.110612590699324	0.128471584297137	0.122623430685038	0.281532924415165	0.590311725601562	0.129789604318409	0.799883990351593	0.546651278552442	3.2816069973701	0.106139815126418	1
Merged-chr2-166079958-2	chr2	166079858	166080058	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252579, intron 15 of 20)	intron (NM_001252579, intron 15 of 20)	75327.0	NM_001355619	72043.0	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19628738-4	chr7	19628652	19628852	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290457, intron 1 of 10)	intron (NM_001290457, intron 1 of 10)	686.0	NM_001290457	19698.0	Mm.1741	NM_009046	ENSMUSG00000002983	Relb	shep	avian reticuloendotheliosis viral (v-rel) oncogene related B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32692043-2	chr2	32691943	32692143	+	586.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010236, intron 3 of 14)	B2_Mm2|SINE|B2	2132.0	NM_010236	14287.0	Mm.3830	NM_010236	ENSMUSG00000009566	Fpgs	AA408187	folylpolyglutamyl synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89389239-4	chr3	89389086	89389286	+	985.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009565, intron 1 of 2)	intron (NM_009565, intron 1 of 2)	-1515.0	NM_001355206	22724.0	Mm.262184	NM_009565	ENSMUSG00000028042	Zbtb7b	Thpok|Zfp67|c-Krox	zinc finger and BTB domain containing 7B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141525467-4	chr7	141525361	141525561	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026522, intron 7 of 10)	intron (NM_026522, intron 7 of 10)	14396.0	NM_026522	68038.0	Mm.245355	NM_026522	ENSMUSG00000025512	Chid1	3110023E09Rik|AI841869	chitinase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-193852889-4	chr1	193852792	193852992	+	943.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	-345362.0	NR_029592	387201.0		NR_029592	ENSMUSG00000065533	Mir205	Mirn205|mir-205|mmu-mir-205	microRNA 205	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6273971-4	chr19	6273871	6274071	+	997.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2925.0	NM_010119	13660.0	Mm.30169	NM_010119	ENSMUSG00000024772	Ehd1	AA409636|Past1|RME-1	EH-domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99124092-4	chr7	99124001	99124201	+	915.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 1 of 14)	RLTR11A|LTR|ERVK	17043.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-76408380-4	chr16	76408278	76408478	+	983.4249880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR42-int|LTR|ERVK	-34551.0	NM_001358238	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-20746356-4	chr18	20746257	20746457	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019737)	promoter-TSS (NM_019737)	47.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-85081886-1	chr8	85081786	85081986	+	736.0	f1_balb.idr	intron (NM_001001493, intron 3 of 3)	intron (NM_001001493, intron 3 of 3)	923.0	NM_001001493	414077.0	Mm.35790	NM_001001493	ENSMUSG00000059355	Wdr83os	-	WD repeat domain 83 opposite strand	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70791024-2	chr8	70790924	70791124	+	940.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_199308, intron 1 of 25)	intron (NM_199308, intron 1 of 25)	1409.0	NM_199308	546071.0	Mm.250731	NM_199308	ENSMUSG00000031833	Mast3	BC024265|mKIAA0561	microtubule associated serine/threonine kinase 3	protein-coding	0.925116346641084	0.436613061233352	0.427657828937119	0.420692238174196	0.936256984474214	0.438620820868179	1.34995520326889	0.89001313016581	2.02838243742889	0.255501966516882	1
Merged-chr6-42423466-2	chr6	42423366	42423566	+	826.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11069.0	NM_207028	387353.0	Mm.377914	NM_207028	ENSMUSG00000048284	Tas2r126	T2R12|T2R26|Tas2r26|Tas2r41|mGR26|mt2r35	taste receptor, type 2, member 126	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-38561485-3	chr3	38561447	38561647	+	743.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-76731.0	NM_001167883	99696.0	Mm.290937	NM_001033198	ENSMUSG00000044864	Ankrd50	AI662170|E430012K20Rik|mKIAA1223|mKIAA3019	ankyrin repeat domain 50	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46770116-4	chr8	46770011	46770211	+	903.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152560, intron 1 of 7)	intron (NR_152560, intron 1 of 7)	30366.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-85614654-1	chr1	85614554	85614754	+	824.833313	f1_balb.idr	intron (NM_001013817, intron 3 of 16)	B2_Mm2|SINE|B2	-10763.0	NM_175397	109032.0	Mm.335802	NM_030194	ENSMUSG00000070034	Sp110	5031415C07Rik|52kDa|5830484A20Rik|Ifi75|Ipr1	Sp110 nuclear body protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-131253812-2	chr2	131253712	131253912	+	701.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR42-int|LTR|ERVK	-8196.0	NM_001355681	74450.0	Mm.101264	NM_153501	ENSMUSG00000037514	Pank2	4933409I19Rik|AI642621	pantothenate kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-5583172-4	chr6	5583097	5583297	+	813.604126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-86919.0	NM_013743	27273.0	Mm.235547	NM_013743	ENSMUSG00000019577	Pdk4	AV005916	pyruvate dehydrogenase kinase, isoenzyme 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-156672923-4	chr1	156672802	156673002	+	963.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023141, intron 2 of 5)	RMER17C|LTR|ERVK	1437.0	NM_023141	30935.0	Mm.206737	NM_023141	ENSMUSG00000060519	Tor3a	Adir	torsin family 3, member A	protein-coding	0.970772195133196	1.62269116752098	1.04996097612925	0.792555659934629	1.64585231697548	0.832061432211447	2.38674408130038	1.37556630910076	1.78612942985107	0.173520829957905	0.640902961210202
Merged-chr13-28688007-4	chr13	28687933	28688133	+	860.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045054, intron 3 of 7)	intron (NR_045054, intron 3 of 7)	22840.0	NR_105787	102466635.0		NR_105787	ENSMUSG00000099158	Mir6368	Gm27800|mmu-mir-6368	microRNA 6368	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-84687569-2	chr18	84687469	84687669	+	718.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	(A)n|Simple_repeat|Simple_repeat	-1867.0	NM_023149	66054.0	Mm.29646	NM_023149	ENSMUSG00000024644	Cndp2	0610010E05Rik|C76600|Cn2|Dip-2|Pep-1|Pep1	CNDP dipeptidase 2 (metallopeptidase M20 family)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-19217049-2	chr10	19216949	19217149	+	931.1666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	49811.0	NR_038022	100504265.0	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-164941234-4	chr2	164941119	164941319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-7000.0	NM_013599	17395.0	Mm.4406	NM_013599	ENSMUSG00000017737	Mmp9	AW743869|B/MMP9|Clg4b|Gel B|MMP-9|pro-MMP-9	matrix metallopeptidase 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-68735191-3	chr8	68735123	68735323	+	849.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252623)	promoter-TSS (NM_001252623)	-77.0	NM_172753	234356.0	Mm.334569	NM_172753	ENSMUSG00000036356	Csgalnact1	4732435N03Rik|CSGalNAcT-1	chondroitin sulfate N-acetylgalactosaminyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-34148680-4	chr19	34148590	34148790	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024204, intron 2 of 5)	intron (NM_024204, intron 2 of 5)	17351.0	NM_024204	52024.0	Mm.183030	NM_024204	ENSMUSG00000024774	Ankrd22	5430429D21Rik|D19Ertd675e	ankyrin repeat domain 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-61267251-4	chr11	61267119	61267319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007437)	promoter-TSS (NM_007437)	-33.0	NM_007437	11671.0	Mm.398221	NM_007437	ENSMUSG00000010025	Aldh3a2	AI194803|Ahd-3|Ahd-3r|Ahd3|Ahd3-r|Aldh4|Aldh4-r|FALDH	aldehyde dehydrogenase family 3, subfamily A2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117308965-2	chr11	117308865	117309065	+	866.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113486, intron 3 of 11)	intron (NM_001113486, intron 3 of 11)	-22750.0	NM_017380	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-57275224-4	chr17	57275154	57275354	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-3846.0	NM_001163816	22324.0	Mm.248172	NM_011691	ENSMUSG00000034116	Vav1	Vav|vav-T	vav 1 oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-29245945-4	chr6	29245844	29246044	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26544.0	NM_001190461	69573.0	Mm.45161	NM_023516	ENSMUSG00000043421	Hilpda	2310016C08Rik|AW049004|Hig2	hypoxia inducible lipid droplet associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-91400370-3	chr12	91400233	91400433	+	864.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113404)	promoter-TSS (NM_001113404)	-660.0	NM_001113404	22095.0	Mm.173847	NM_011648	ENSMUSG00000020963	Tshr	AI481368|hypothroid|hyt|pet	thyroid stimulating hormone receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-58076302-1	chr15	58076202	58076402	+	1000.0	f0_c57.idr	5' UTR (NM_001042438, exon 1 of 5)	5' UTR (NM_001042438, exon 1 of 5)	206.0	NM_001042438	22770.0	Mm.244931	NM_009572	ENSMUSG00000022361	Zhx1	-	zinc fingers and homeoboxes 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-39511989-4	chr1	39511871	39512071	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER92D|LTR|ERV1	-23730.0	NM_028043	52846.0	Mm.259421	NM_028043	ENSMUSG00000003135	Cnot11	2410015L18Rik|C40|D1Bwg0212e	CCR4-NOT transcription complex, subunit 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-121184829-5	chr6	121184584	121184784	+	889.43335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028730, intron 1 of 4)	intron (NM_028730, intron 1 of 4)	1017.0	NM_001304773	74043.0	Mm.491240	NM_028730	ENSMUSG00000067825	Pex26	4632428M11Rik	peroxisomal biogenesis factor 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-47778537-4	chr6	47778419	47778619	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	25133.0	NR_030485	735289.0		NR_030485	ENSMUSG00000076060	Mir704	Mirn704|mir-704|mmu-mir-704	microRNA 704	ncRNA	4.38511122000022	3.68332418846381	3.70335826463686	3.12205753125286	3.5712608297196	2.06184654723981	3.02385217908537	2.66689425686688	-1.31406939445624	0.0380885393982558	0.277523448259233
Merged-chr16-20392524-2	chr16	20392424	20392624	+	560.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_013790, exon 11 of 30)	exon (NM_013790, exon 11 of 30)	33870.0	NM_013790	27416.0	Mm.20845	NM_013790	ENSMUSG00000022822	Abcc5	2900011L11Rik|AI132311|Abcc5a|Abcc5b|Mrp5	ATP-binding cassette, sub-family C (CFTR/MRP), member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-14774203-2	chr9	14774103	14774303	+	725.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3173.0	NM_029306	69325.0	Mm.440453	NM_029306	ENSMUSG00000031927	1700012B09Rik	1700007P19Rik	RIKEN cDNA 1700012B09 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-86579463-4	chr6	86579365	86579565	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48709.0	NM_026414	67855.0	Mm.183043	NM_026414	ENSMUSG00000033508	Asprv1	2300003P22Rik|AA986851|SASP|SASPase|Taps	aspartic peptidase, retroviral-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-39784720-6	chr1	39784608	39784808	+	879.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20624.0	NM_001177348	100042065.0	Mm.209678	NM_001177348	ENSMUSG00000091937	Gm3646	-	predicted gene 3646	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-68060111-2	chr18	68060011	68060211	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172631, intron 1 of 5)	(TTA)n|Simple_repeat|Simple_repeat	126938.0	NM_172631	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	-0.151591052260365	-0.130940799197888	0.714739633291343	-0.142844897156857	-0.150282248982373	-0.12944136653855	0.729351554324659	-0.141931488452262	0.041083046276385	0.986412301813541	1
Merged-chr10-99199712-4	chr10	99199585	99199785	+	940.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63546.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-64738908-3	chr1	64738817	64739017	+	794.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1167.0	NM_022721	14367.0	Mm.150813	NM_022721	ENSMUSG00000045005	Fzd5	5330434N09Rik|AI427138|Fz-5|Fz5|mFz5	frizzled class receptor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-113910227-4	chr5	113910121	113910321	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1515.0	NM_011779	23790.0	Mm.260158	NM_011779	ENSMUSG00000004530	Coro1c	AL022675|AW455561|AW548837	coronin, actin binding protein 1C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-16318749-1	chr19	16318649	16318849	+	736.0	f0_balb.idr	intron (NM_008139, intron 3 of 6)	intron (NM_008139, intron 3 of 6)	-3745.0	NR_105832	102465218.0		NR_105832	ENSMUSG00000098718	Mir496b	Gm28028|mmu-mir-496b	microRNA 496b	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80509742-4	chr10	80509649	80509849	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139226, intron 1 of 1)	intron (NM_139226, intron 1 of 1)	14843.0	NM_139226	246086.0	Mm.250572	NM_139226	ENSMUSG00000045518	Onecut3	OC-3|Oc3	one cut domain, family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-107685057-2	chr13	107684957	107685157	+	607.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2340.0	NR_045900	72257.0	Mm.234155	NR_045900	ENSMUSG00000102000	1700006H21Rik	-	RIKEN cDNA 1700006H21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-60284903-2	chr14	60284803	60285003	+	727.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144843, intron 4 of 13)	intron (NM_144843, intron 4 of 13)	19698.0	NM_144843	219135.0	Mm.247007	NM_144843	ENSMUSG00000021987	Mtmr6	4022440C11Rik|AI428804|AU041072	myotubularin related protein 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35164988-4	chr17	35164875	35165075	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020027)	promoter-TSS (NM_020027)	-98.0	NM_020027	53761.0	Mm.272462	NM_020027	ENSMUSG00000024393	Prrc2a	3110039B05Rik|Bat-2|Bat2|D17H6S51E|G2|Wbp12|mKIAA4178	proline-rich coiled-coil 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-36215300-1	chr12	36215200	36215400	+	846.0	f0_balb.idr	intron (NM_001361098, intron 5 of 8)	intron (NM_001361098, intron 5 of 8)	2918.0	NM_027699	71156.0	Mm.250837	NM_027699	ENSMUSG00000020545	Lrrc72	1700108M19Rik|4933421E18Rik	leucine rich repeat containing 72	protein-coding	-1.84303373260285	-1.81303463126392	-1.82210660711932	-1.82955859819738	-1.84092785115721	-1.81106869625141	-1.8200529106377	-1.54273750312762	1.50114612804783	0.670102668014672	1
Merged-chr16-91021264-4	chr16	91021174	91021374	+	951.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152264, intron 15 of 17)	intron (NR_152264, intron 15 of 17)	-9966.0	NM_001164483	104015.0	Mm.187079	NM_001045515	ENSMUSG00000022973	Synj1	A930006D20Rik|AA675315|mKIAA0910	synaptojanin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-61211021-4	chr18	61210936	61211136	+	971.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007885, intron 1 of 3)	intron (NM_007885, intron 1 of 3)	560.0	NM_007885	13521.0	Mm.24803	NM_007885	ENSMUSG00000034320	Slc26a2	Dtd|ST-OB	solute carrier family 26 (sulfate transporter), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-87981086-2	chr6	87980986	87981186	+	560.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_026990)	promoter-TSS (NR_026990)	396.0	NM_198622	243529.0	Mm.33796	NM_198622	ENSMUSG00000044927	H1fx	Gm461|H1.10|H1X	H1 histone family, member X	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-38403845-4	chr16	38403733	38403933	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134102, intron 8 of 10)	intron (NM_134102, intron 8 of 10)	29312.0	NM_134102	85031.0	Mm.279805	NM_134102	ENSMUSG00000002847	Pla1a	AA986889|Ps-pla1|Pspla1	phospholipase A1 member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5598728-2	chr17	5598628	5598828	+	783.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	B4A|SINE|B4	106128.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47739535-2	chr17	47739435	47739635	+	938.2000119999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161723, intron 1 of 8)	intron (NM_001161723, intron 1 of 8)	1604.0	NM_001161723	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-114770430-4	chr9	114770321	114770521	+	907.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252479, intron 1 of 3)	intron (NM_001252479, intron 1 of 3)	11572.0	NM_133978	102545.0	Mm.35600	NM_133978	ENSMUSG00000032436	Cmtm7	AI481279|Cklfsf7|LNV	CKLF-like MARVEL transmembrane domain containing 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-9612035-4	chr4	9611936	9612136	+	960.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290367, intron 3 of 22)	intron (NM_001290367, intron 3 of 22)	31681.0	NM_001177853	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-26600850-4	chr11	26600756	26600956	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6936.0	NM_001252447	69922.0	Mm.285351	NM_027260	ENSMUSG00000064090	Vrk2	2810003O05Rik|AI447698	vaccinia related kinase 2	protein-coding	3.52905844048786	3.70959548883445	3.58555390850513	4.18296278266083	3.86382302409775	3.82190728812221	3.61357156732478	4.3404991648349	0.231291652132544	0.63007275145128	0.981387068864916
Merged-chr18-20745051-3	chr18	20744967	20745167	+	825.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019737, intron 1 of 8)	intron (NM_019737, intron 1 of 8)	1337.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-179847938-4	chr1	179847835	179848035	+	980.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43920.0	NM_026375	226747.0	Mm.128165	NM_026375	ENSMUSG00000026491	Ahctf1	6230412P20Rik|AV011447|Elys	AT hook containing transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-28928191-2	chr6	28928091	28928291	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPEz-int|LTR|ERVK	-94428.0	NR_029567	387237.0		NR_029567	ENSMUSG00000065469	Mir129-1	Mirn129-1|Mirn129b|miR-129b|mir-129-1	microRNA 129-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-12996661-2	chr10	12996561	12996761	+	714.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11789.0	NM_175102	66125.0	Mm.29743	NM_175102	ENSMUSG00000078348	Sf3b5	10kDa|1110005L13Rik|AU043053|Sf3b10	splicing factor 3b, subunit 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55876676-4	chr19	55876592	55876792	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_138565, intron 4 of 15)	intron (NR_138565, intron 4 of 15)	-18629.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-132710694-4	chr2	132710576	132710776	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028637, intron 2 of 2)	intron (NM_028637, intron 2 of 2)	20078.0	NM_028637	73747.0	Mm.284114	NM_028637	ENSMUSG00000044991	1110034G24Rik	-	RIKEN cDNA 1110034G24 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-68180936-1	chr18	68180836	68181036	+	890.3333130000001	f0_balb.idr	intron (NM_172631, intron 3 of 5)	intron (NM_172631, intron 3 of 5)	-47010.0	NM_001357444	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	1.88855788032964	2.88715868918913	1.32968439228947	1.00856471757881	2.32983617039469	3.1836135299219	1.34149729991595	1.01392944202389	0.545852024288173	0.638212053703772	0.982599433509505
Merged-chr4-62641054-4	chr4	62640838	62641038	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019492, intron 17 of 19)	intron (NM_019492, intron 17 of 19)	21266.0	NM_134257	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99268407-2	chr7	99268307	99268507	+	701.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001043355)	promoter-TSS (NM_001043355)	61.0	NM_001043355	17760.0	Mm.154087	NM_010837	ENSMUSG00000055407	Map6	2810411E12Rik|Map-6|Mtap6|STOP	microtubule-associated protein 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-53479666-3	chr19	53479556	53479756	+	865.0888669999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-14860.0	NR_028427	381232.0	Mm.248624	NR_028427	ENSMUSG00000097636	Mirt1	4833407H14Rik|5430437C04Rik|5830416P10Rik|Gm10758	myocardial infarction associated transcript 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-120291797-4	chr2	120291697	120291897	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-2728.0	NM_001024137	78390.0	Mm.330507	NM_001024137	ENSMUSG00000070719	Pla2g4d	2610311B01Rik|Pla2delta|cPLA2delta	phospholipase A2, group IVD	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120169469-2	chr11	120169369	120169569	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18118.0	NM_001164798	72055.0	Mm.253403	NM_024249	ENSMUSG00000061306	Slc38a10	1810073N04Rik	solute carrier family 38, member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-77805869-4	chr15	77805848	77806048	+	935.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022410, intron 3 of 40)	intron (NM_022410, intron 3 of 40)	36227.0	NM_022410	17886.0	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-88306884-3	chr6	88306797	88306997	+	775.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149744, intron 3 of 5)	intron (NR_149744, intron 3 of 5)	84629.0	NM_019964	56691.0	Mm.272871	NM_019964	ENSMUSG00000048206	Dnajb8	1700016F14Rik|1700031F10Rik|AI326313|mDj6	DnaJ heat shock protein family (Hsp40) member B8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-109480043-4	chr11	109479956	109480156	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028710, intron 1 of 13)	intron (NM_028710, intron 1 of 13)	-5836.0	NM_001361975	74008.0	Mm.482224	NM_028710	ENSMUSG00000020604	Arsg	6330406P08Rik|AI846872|ASG	arylsulfatase G	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69682950-4	chr11	69682850	69683050	+	990.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163571)	promoter-TSS (NM_001163571)	-866.0	NM_001163571	80886.0	Mm.284592	NM_030702	ENSMUSG00000005204	Senp3	AA408656|Smt3ip|Smt3ip1	SUMO/sentrin specific peptidase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-16139386-2	chr19	16139286	16139486	+	695.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008139, intron 1 of 6)	intron (NM_008139, intron 1 of 6)	6555.0	NM_008139	14682.0	Mm.439701	NM_008139	ENSMUSG00000024639	Gnaq	1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI	guanine nucleotide binding protein, alpha q polypeptide	protein-coding	0.444605248455244	0.986305422157942	0.746603022000908	0.323974154134207	0.913059340318523	0.334633606763432	0.329246224462342	0.324687664204515	-0.945646641482276	0.622709590683472	1
Merged-chr8-72485986-3	chr8	72485892	72486092	+	971.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177766, intron 4 of 5)	intron (NM_177766, intron 4 of 5)	6622.0	NM_177766	270066.0	Mm.291461	NM_177766	ENSMUSG00000019731	Slc35e1	6030458H05|AA408278	solute carrier family 35, member E1	protein-coding	4.67250956872551	3.65234161262369	3.6024978317838	4.1608886544667	1.90613953218474	3.31052274355101	1.55586964392192	2.24472467375607	-2.67197182360385	9.43740974575257e-05	0.0029693192866138
Merged-chr3-152212168-3	chr3	152212026	152212226	+	751.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355374, intron 1 of 19)	intron (NM_001355374, intron 1 of 19)	1704.0	NM_001355374	51886.0	Mm.278922	NM_057172	ENSMUSG00000028034	Fubp1	9530027K12Rik|D3Ertd330e|FBP|Fubp|Fubp4	far upstream element (FUSE) binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-109196330-4	chr3	109196220	109196420	+	892.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	73171.0	NM_172685	229731.0	Mm.33574	NM_172685	ENSMUSG00000040322	Slc25a24	2610016M12Rik	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-134639472-4	chr5	134639394	134639594	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001312867)	promoter-TSS (NM_001312867)	-85.0	NM_033561	22384.0	Mm.27955	NM_033561	ENSMUSG00000040731	Eif4h	AU018978|D5Ertd355e|E430026L18Rik|Ef4h|Wbscr1|Wscr1|eIF-4H	eukaryotic translation initiation factor 4H	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-37350457-2	chr9	37350357	37350557	+	729.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	-2065.0	NM_001081429	245902.0	Mm.390150	NM_001081429	ENSMUSG00000034303	Ccdc15	A630039F14Rik|D030074L19	coiled-coil domain containing 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-38337438-3	chr6	38337330	38337530	+	701.099976	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028864, intron 2 of 8)	B2_Mm2|SINE|B2	17173.0	NM_001347122	78781.0	Mm.25243	NM_028421	ENSMUSG00000029826	Zc3hav1	1200014N16Rik|2900058M19Rik|9130009D18Rik|9830115L13Rik|ARTD13|D6Bwg1452e|ZAP	zinc finger CCCH type, antiviral 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-43674428-2	chr19	43674328	43674528	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045645)	promoter-TSS (NR_045645)	453.0	NM_145156	246696.0	Mm.23827	NM_145156	ENSMUSG00000040414	Slc25a28	Mfrn2|Mrs3/4	solute carrier family 25, member 28	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-5560384-2	chr5	5560284	5560484	+	828.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357031)	promoter-TSS (NM_001357031)	-843.0	NM_001357031	207704.0	Mm.323984	NM_153116	ENSMUSG00000040464	Gtpbp10	4930545J22Rik|BC034507	GTP-binding protein 10 (putative)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-147916527-2	chr4	147916427	147916627	+	607.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011122, intron 16 of 18)	intron (NM_011122, intron 16 of 18)	-11618.0	NM_001285921	170731.0	Mm.154312	NM_133201	ENSMUSG00000029020	Mfn2	D630023P19Rik|Fzo	mitofusin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-75363933-2	chr18	75363833	75364033	+	1000.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_155535, exon 6 of 7)	non-coding (NR_155535, exon 6 of 7)	3155.0	NR_155535	102636262.0	Mm.421168	NR_155535		Gm20544	-	predicted gene 20544	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70789479-4	chr11	70789372	70789572	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23089.0	NM_001045526	327957.0	Mm.164325	NM_001045526	ENSMUSG00000057135	Scimp	A430084P05Rik	SLP adaptor and CSK interacting membrane protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-34543890-2	chr5	34543790	34543990	+	560.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145858, intron 1 of 12)	intron (NM_001145858, intron 1 of 12)	525.0	NM_001145858	24055.0	Mm.5012	NM_011893	ENSMUSG00000054520	Sh3bp2	3BP2	SH3-domain binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-102607820-2	chr4	102607721	102607921	+	728.833374	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001177980)	TTS (NM_001177980)	17978.0	NM_001177981	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	-1.33927601290251	-1.1500655493574	-1.31937625420031	-1.32768700813376	-0.948048553500553	-1.30706634129226	-1.31708589100289	-1.32619938715315	1.06814573574813	0.753975296856039	1
Merged-chr17-87262024-2	chr17	87261924	87262124	+	729.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_139295, intron 1 of 3)	ORR1A2|LTR|ERVL-MaLR	3923.0	NM_176808	193813.0	Mm.30251	NM_139295	ENSMUSG00000024150	Mcfd2	1810021C21Rik|F5f8d|Lman1ip|Sdnsf	multiple coagulation factor deficiency 2	protein-coding	0.772598027992659	1.75919165558567	0.802746895550037	0.989823042399234	1.23785342543538	1.77454908463123	1.19972093808271	1.43163614624825	1.01717592623381	0.454410996724597	0.919120493489568
Merged-chr17-46297391-2	chr17	46297291	46297491	+	929.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286028)	promoter-TSS (NM_001286028)	-92.0	NM_001286028	106565.0	Mm.23633	NM_134120	ENSMUSG00000047428	Dlk2	AI413481|DLK-2|Egfl9	delta like non-canonical Notch ligand 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-85388485-2	chr10	85388385	85388585	+	746.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028709, intron 1 of 16)	CpG	1671.0	NM_028709	74007.0	Mm.36544	NM_028709	ENSMUSG00000020042	Btbd11	6330404E16Rik	BTB (POZ) domain containing 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-30826732-4	chr14	30826641	30826841	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028839, intron 1 of 7)	intron (NM_028839, intron 1 of 7)	1147.0	NM_028839	69179.0	Mm.143025	NM_028839	ENSMUSG00000006526	Tmem110	1810038N08Rik|2310014H19Rik|AW554125|STIMATE	transmembrane protein 110	protein-coding	-0.121176927877775	-0.250655909831672	0.313184676974138	-0.258741897341554	-0.263716132883422	-0.249626650603199	-0.254214223816292	0.378104687055232	-0.0340059904713979	0.988825736023964	1
Merged-chr17-29437409-4	chr17	29437306	29437506	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-53639.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-150875617-3	chr2	150875479	150875679	+	870.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151505, intron 1 of 12)	RLTR25B|LTR|ERVK	29152.0	NM_024465	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128233930-2	chr10	128233830	128234030	+	659.275024	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164081, intron 1 of 28)	intron (NM_001164081, intron 1 of 28)	1867.0	NM_001136082	21853.0	Mm.6458	NM_011589	ENSMUSG00000039994	Timeless	C77407|Debt69|tim	timeless circadian clock 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-98436988-4	chr4	98436894	98437094	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005784, intron 11 of 19)	intron (NM_001005784, intron 11 of 19)	25967.0	NM_001355177	12695.0	Mm.90218	NM_007704	ENSMUSG00000061859	Patj	Cipp|Inadl	PATJ, crumbs cell polarity complex component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-90109574-4	chr9	90109488	90109688	+	964.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039147, intron 2 of 12)	intron (NM_001039147, intron 2 of 12)	5232.0	NM_001039147	21761.0	Mm.426209	NM_024431	ENSMUSG00000062270	Morf4l1	MORFRG15|MRG15|TEG-189|Tex189|mKIAA4002	mortality factor 4 like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-21911065-2	chr16	21910965	21911165	+	560.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_172821, exon 8 of 13)	exon (NM_172821, exon 8 of 13)	19096.0	NM_172821	71751.0	Mm.420837	NM_172821	ENSMUSG00000033618	Map3k13	C130026N12Rik|LZK	mitogen-activated protein kinase kinase kinase 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-91783370-2	chr12	91783270	91783470	+	641.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 1 of 6)	B3A|SINE|B2	3066.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-53825040-3	chr19	53824953	53825153	+	720.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170847, intron 5 of 13)	intron (NM_001170847, intron 5 of 13)	-67178.0	NM_011050	18569.0	Mm.1605	NM_011050	ENSMUSG00000024975	Pdcd4	D19Ucla1|Ma3|Tis	programmed cell death 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27095553-1	chr17	27095453	27095653	+	579.0	f1_balb.idr	exon (NM_080553, exon 17 of 58)	exon (NM_080553, exon 17 of 58)	4308.0	NR_106142	102465779.0		NR_106142	ENSMUSG00000098826	Mir7677	Gm27400|mmu-mir-7677	microRNA 7677	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-57557546-2	chr16	57557371	57557571	+	680.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177871, intron 1 of 1)	intron (NM_001177871, intron 1 of 1)	8229.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-11476956-4	chr8	11476852	11477052	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_126558)	promoter-TSS (NR_126558)	-977.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-29067203-4	chr19	29067090	29067290	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045687)	promoter-TSS (NR_045687)	-111.0	NR_045687	100503337.0	Mm.103412	NR_045687		Gm9895	-	predicted gene 9895	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-94506144-4	chr11	94506042	94506242	+	889.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_170671, intron 13 of 18)	intron (NM_170671, intron 13 of 18)	-6168.0	NM_027984	71889.0	Mm.248620	NM_027984	ENSMUSG00000010080	Epn3	2310022G12Rik	epsin 3	protein-coding	2.51534663468653	1.79454583044419	1.54516221809005	2.6495766755079	2.22551318102207	1.80653344794019	2.19386109927957	1.86449254996182	-0.465699022227721	0.619092508381171	0.978377997991791
Merged-chr5-96993354-4	chr5	96993219	96993419	+	887.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4370.0	NM_080708	140780.0	Mm.281490	NM_080708	ENSMUSG00000034663	Bmp2k	4933417M22Rik|AA673486|AV128808|BIKE	BMP2 inducible kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-59611960-4	chr2	59611847	59612047	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198294)	promoter-TSS (NM_198294)	-95.0	NM_198294	66860.0	Mm.27917	NM_198294	ENSMUSG00000035168	Tanc1	1200003E16Rik|Tanc|mKIAA1728	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116429089-3	chr11	116428989	116429189	+	888.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5005.0	NM_176902	319370.0	Mm.258466	NM_176902	ENSMUSG00000050628	Ubald2	1110014K08Rik|D030012E24Rik|Fam100b	UBA-like domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-16637877-4	chr11	16637766	16637966	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-114337.0	NM_207655	13649.0	Mm.8534	NM_007912	ENSMUSG00000020122	Egfr	9030024J15Rik|AI552599|Erbb|Errb1|Errp|Wa5|wa-2|wa2	epidermal growth factor receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-14885942-3	chr8	14885809	14886009	+	915.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2627.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-13599758-1	chr9	13599658	13599858	+	783.0	f0_balb.idr	Intergenic	Intergenic	-20231.0	NM_001013813	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	-1.36216889894088	-1.47766515804837	-1.48712381115042	-1.49489343043188	-1.35835918214739	-1.47561542846344	-1.33615478492984	-1.49350267229525	0.714637186234693	0.825664108886592	1
Merged-chr6-108146626-4	chr6	108146531	108146731	+	908.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145937, intron 6 of 8)	intron (NM_145937, intron 6 of 8)	38952.0	NM_145937	58911.0	Mm.439876	NM_145937	ENSMUSG00000030101	Sumf1	AA543204|AI463102|AI851573|FGE	sulfatase modifying factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-104069923-2	chr2	104069844	104070044	+	596.5	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-1066.0	NM_181858	333883.0	Mm.359026	NM_181858	ENSMUSG00000068686	Cd59b	-	CD59b antigen	protein-coding	0.952252200948685	2.01680140674306	1.84481844115895	1.68670429415222	0.959344663496874	0.816603912975551	1.22562803674924	0.78394156263949	-2.95270117567044	0.0338418475448749	0.259060710448793
Merged-chr18-6765075-4	chr18	6764992	6765192	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001278447)	promoter-TSS (NM_001278447)	-75.0	NM_181070	19330.0	Mm.132802	NM_181070	ENSMUSG00000073639	Rab18	AA959686	RAB18, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80142991-3	chr10	80142856	80143056	+	815.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347092, intron 1 of 2)	intron (NM_001347092, intron 1 of 2)	641.0	NM_025313	66043.0	Mm.278560	NM_025313	ENSMUSG00000003072	Atp5d	0610008F14Rik|1500000I11Rik|AA960090|AI876556|AU020773|Atp5f1d|C85518	ATP synthase, H+ transporting, mitochondrial F1 complex, delta subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-3231829-3	chr16	3231764	3231964	+	822.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CTGTG)n|Simple_repeat|Simple_repeat	-360534.0	NM_146860	258859.0	Mm.377723	NM_146860	ENSMUSG00000051003	Olfr161	MOR131-1|OR912-47M6	olfactory receptor 161	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127285846-2	chr10	127285746	127285946	+	817.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_033072, exon 6 of 13)	exon (NM_033072, exon 6 of 13)	3172.0	NM_001347171	110962.0	Mm.372826	NM_033072	ENSMUSG00000025409	Mbd6	D10Wsu93e	methyl-CpG binding domain protein 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-6444941-2	chr4	6444839	6445039	+	875.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010945, intron 1 of 30)	(TG)n|Simple_repeat|Simple_repeat	9332.0	NM_010945	18201.0	Mm.3059	NM_010945	ENSMUSG00000028245	Nsmaf	AA959567|C630007J05|Fan	neutral sphingomyelinase (N-SMase) activation associated factor	protein-coding	1.54064661780621	1.75079572054798	0.943421914592736	1.15220328847931	1.77102247979134	1.61384203124087	2.44541879829362	0.929614510650677	1.28474776855875	0.297370563195714	0.800257675359925
Merged-chr4-63424248-4	chr4	63424143	63424343	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001008792, intron 7 of 11)	intron (NM_001008792, intron 7 of 11)	-20798.0	NM_001045514	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-50981305-3	chr2	50981145	50981345	+	778.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	71561.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-43799740-4	chr5	43799644	43799844	+	885.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17595.0	NM_178729	242960.0	Mm.25794	NM_178729	ENSMUSG00000039753	Fbxl5	Fbl4|Fir4	F-box and leucine-rich repeat protein 5	protein-coding	1.35090087917916	1.52465748659198	1.00522297545545	1.74078866869442	2.23578258258091	2.76164920199013	1.01110760609154	1.75080569086583	1.83763170056658	0.111416221081207	0.522040544337016
Merged-chr17-80252922-1	chr17	80252822	80253022	+	689.0	f0_balb.idr	intron (NM_198942, intron 15 of 22)	intron (NM_198942, intron 15 of 22)	28471.0	NM_001355458	67242.0	Mm.279985	NM_026053	ENSMUSG00000055760	Gemin6	2610019B15Rik|2810470M17Rik	gem nuclear organelle associated protein 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-32493825-4	chr9	32493715	32493915	+	793.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008026, intron 1 of 8)	intron (NM_008026, intron 1 of 8)	47637.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-31818238-3	chr11	31818130	31818330	+	921.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_102310, exon 4 of 4)	non-coding (NR_102310, exon 4 of 4)	6317.0	NR_102310	414116.0	Mm.150222	NR_102310	ENSMUSG00000085772	D630024D03Rik	-	RIKEN cDNA D630024D03 gene	ncRNA	1.28904129369152	2.07084238110731	1.56808708933758	1.68355199053929	1.61286066926842	1.42345833332658	2.40797080105483	2.33016704517413	0.956704263369522	0.357346757450286	0.853959579582101
Merged-chr2-91089230-4	chr2	91089153	91089353	+	972.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7425.0	NM_011355	20375.0	Mm.1302	NM_011355	ENSMUSG00000002111	Spi1	Dis-1|Dis1|PU.1|Sfpi-1|Sfpi1|Spi-1|Tcfpu1|Tfpu.1	spleen focus forming virus (SFFV) proviral integration oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-84582755-4	chr3	84582638	84582838	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081093)	promoter-TSS (NM_001081093)	-113.0	NM_001081093	99889.0	Mm.316536	NM_001081093	ENSMUSG00000074513	Arfip1	2310030I10Rik|Arfaptin|D3Ertd598e	ADP-ribosylation factor interacting protein 1	protein-coding	4.15693089248373	4.95729820443797	4.72583179075355	4.8033366438533	4.99396296423077	4.30904525053556	4.16897593724013	4.4428677659375	-0.195796087055257	0.614079462457532	0.977250439470701
Merged-chr13-47244387-2	chr13	47244269	47244469	+	642.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001170643, exon 8 of 8)	exon (NM_001170643, exon 8 of 8)	50366.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	-2.18233058068552	-2.15536956715525	-2.16352280018114	-2.04193253143548	-2.18043796738662	-2.15360272754651	-2.16167708693786	-2.16902129354933	-0.683654500252594	0.846597994014493	1
Merged-chr11-70166566-4	chr11	70166464	70166664	+	965.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010796)	promoter-TSS (NM_010796)	-59.0	NM_001204252	17312.0	Mm.252405	NM_010796	ENSMUSG00000000318	Clec10a	CD301a|M-ASGP-BP-1|Mgl|Mgl1	C-type lectin domain family 10, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-104972997-4	chr9	104972883	104973083	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028719, intron 7 of 15)	intron (NM_028719, intron 7 of 15)	-80285.0	NM_053159	94062.0	Mm.29746	NM_053159	ENSMUSG00000032563	Mrpl3	2010320L16Rik|5930422H18Rik|AA407889	mitochondrial ribosomal protein L3	protein-coding	5.57882413251425	5.11517665012075	5.38606548260818	5.52985939062131	5.25101478771168	5.83410385260299	5.8417426962044	5.60261175362418	0.254890966626774	0.354634112332209	0.853391720177295
Merged-chr5-113647379-4	chr5	113647282	113647482	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008153, intron 1 of 2)	intron (NM_008153, intron 1 of 2)	3008.0	NM_008153	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-40038068-4	chr12	40037941	40038141	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007487)	promoter-TSS (NM_007487)	-54.0	NM_001039515	11861.0	Mm.12723	NM_007487	ENSMUSG00000047446	Arl4a	AI467555|Arl4	ADP-ribosylation factor-like 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-100697646-3	chr13	100697529	100697729	+	870.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_183115)	TTS (NM_183115)	28148.0	NM_001168386	76041.0	Mm.23977	NM_183115	ENSMUSG00000048924	Ccdc125	5830436D01Rik|AL023012	coiled-coil domain containing 125	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150626148-2	chr4	150626048	150626248	+	668.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26026.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-134128770-4	chr4	134128690	134128890	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080559)	promoter-TSS (NM_080559)	-37.0	NM_080559	73723.0	Mm.22240	NM_080559	ENSMUSG00000028843	Sh3bgrl3	1110004L05Rik|AU022188	SH3 domain binding glutamic acid-rich protein-like 3	protein-coding	3.7620901934626	4.36575365358867	3.65072291077202	4.12057829438368	3.60755404539542	2.86673873408187	3.29931428563226	4.53195305381108	-0.367796978471995	0.494329891754342	0.935679785535167
Merged-chr4-134371657-2	chr4	134371557	134371757	+	715.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_019578, exon 1 of 11)	exon (NM_019578, exon 1 of 11)	890.0	NM_001355493	56219.0	Mm.30978	NM_019578	ENSMUSG00000028838	Extl1	D430033M16Rik	exostoses (multiple)-like 1	protein-coding	0.923603395073419	0.260489532662382	0.252800082068561	0.246829619520322	0.936976189630611	0.26221551543839	0.979563581958872	0.247875103772406	1.07539719282137	0.597824583854259	1
Merged-chr6-124837323-2	chr6	124837223	124837423	+	618.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_013530, intron 6 of 9)	intron (NM_013530, intron 6 of 9)	2952.0	NM_013530	14695.0	Mm.68889	NM_013530	ENSMUSG00000023439	Gnb3	Gnb-3	guanine nucleotide binding protein (G protein), beta 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-73632962-4	chr12	73632855	73633055	+	967.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001313977, intron 2 of 14)	intron (NM_001313977, intron 2 of 14)	48159.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117430367-2	chr8	117430267	117430467	+	544.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028941, intron 8 of 20)	ID_B1|SINE|B4	-22656.0	NR_106045	102466801.0		NR_106045	ENSMUSG00000099062	Mir7077	Gm27774|mmu-mir-7077	microRNA 7077	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-72763098-4	chr5	72762927	72763127	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013689, intron 14 of 17)	intron (NM_013689, intron 14 of 17)	-10250.0	NM_001122754	22165.0	Mm.3264	NM_013698	ENSMUSG00000054892	Txk	A130089B16Rik|Btkl|PTK-RL-18|PTK4|Rlk	TXK tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-31459628-3	chr3	31459523	31459723	+	892.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-149304.0	NM_172861	241919.0	Mm.285366	NM_172861	ENSMUSG00000069072	Slc7a14	A930013N06|BC061928	solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-43915416-4	chr5	43915324	43915524	+	999.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1A|DNA|hAT-Charlie	46615.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-73064200-4	chr2	73064096	73064296	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-83750.0	NM_001018042	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-95893064-4	chr13	95892964	95893164	+	842.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1142.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	1.46533435224545	0.922619903658967	1.71993373645616	0.891544108532383	1.4784218292404	1.16882707703715	1.47795531734986	2.18153787702465	1.1186620176076	0.379698498018733	0.871899780487614
Merged-chr10-128497304-2	chr10	128497204	128497404	+	768.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_172259, exon 2 of 7)	exon (NM_172259, exon 2 of 7)	1381.0	NM_172259	216459.0	Mm.291688	NM_172259	ENSMUSG00000039824	Myl6b	5730437E04Rik|BC037527|MLC1SA	myosin, light polypeptide 6B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-80949440-2	chr8	80949333	80949533	+	832.5	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	65473.0	NM_027554	74841.0	Mm.246018	NM_027554	ENSMUSG00000038250	Usp38	4631402N15Rik|4833420O05Rik|AA536967|AU044701|AW544820|mKIAA1891	ubiquitin specific peptidase 38	protein-coding	2.63757151281938	2.7577670400252	2.29200272138733	2.36157127794978	1.82096313468826	2.03283879054655	3.12306810781996	3.09817424439768	0.280054299324561	0.729325539080139	0.998431161219273
Merged-chr2-32581614-3	chr2	32581508	32581708	+	795.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198191, intron 9 of 9)	intron (NM_198191, intron 9 of 9)	-5470.0	NM_001276425	20448.0	Mm.27446	NM_011373	ENSMUSG00000079442	St6galnac4	SIAT7-D|ST6GalNAcIV|Siat7d	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-67290502-4	chr18	67290418	67290618	+	864.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053261, intron 1 of 7)	intron (NM_053261, intron 1 of 7)	1295.0	NM_053261	114663.0	Mm.34079	NM_053261	ENSMUSG00000024525	Impa2	2210415D20Rik|AI326924|AW259601	inositol (myo)-1(or 4)-monophosphatase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-125132583-2	chr4	125132483	125132683	+	984.083374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-4702.0	NM_153159	230738.0	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-32686067-4	chr9	32685960	32686160	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9982.0	NM_011808	23871.0	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-26681326-4	chr8	26681201	26681401	+	643.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	143122.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	0.668592702016567	1.53147827318777	1.07757658007134	1.41629726892233	0.671164665447309	0.711597839704848	1.08685408189471	1.61430523328644	-0.497001891370379	0.742067425356821	0.998431161219273
Merged-chr4-117189497-4	chr4	117189350	117189550	+	812.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-6826.0	NM_134471	73804.0	Mm.247651	NM_134471	ENSMUSG00000028678	Kif2c	4930402F02Rik|ESTM5|Knsl6|MCAK|X83316	kinesin family member 2C	protein-coding	2.40014419223278	1.8261972003581	2.04548132993342	1.10198610641569	1.4757673238395	2.73370003158846	1.1309958211567	2.109757271501	0.223232184078283	0.842551148660534	0.998431161219273
Merged-chr2-145890581-3	chr2	145890488	145890688	+	802.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12653.0	NM_026425	67877.0	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-53644233-4	chr15	53644123	53644323	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177225, intron 4 of 4)	B3A|SINE|B2	-29944.0	NR_039538	100628567.0		NR_039538	ENSMUSG00000104794	Mir28c	mmu-mir-28c	microRNA 28c	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-61370643-4	chr9	61370539	61370739	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1727.0	NM_001083928	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-9494895-2	chr13	9494795	9494995	+	929.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081426, intron 2 of 36)	intron (NM_001081426, intron 2 of 36)	218370.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-66034070-3	chr15	66033963	66034163	+	768.361084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152923, intron 1 of 14)	intron (NM_152923, intron 1 of 14)	-57259.0	NM_001145096	654498.0	Mm.364550	NM_001145096	ENSMUSG00000072511	Hhla1	F930104E18Rik	HERV-H LTR-associating 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-17652940-1	chr6	17652840	17653040	+	665.0	f0_balb.idr	intron (NM_007604, intron 3 of 9)	intron (NM_007604, intron 3 of 9)	15930.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-98447701-2	chr7	98447601	98447801	+	640.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001130693, intron 2 of 18)	intron (NM_001130693, intron 2 of 18)	7285.0	NM_001130693	14918.0	Mm.389928	NM_001034890	ENSMUSG00000074003	Gucy2d	-	guanylate cyclase 2d	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-31076006-3	chr2	31075893	31076093	+	879.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355105, intron 6 of 15)	intron (NM_001355105, intron 6 of 15)	20507.0	NM_001177650	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-29247417-3	chr7	29247312	29247512	+	868.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_028179)	TTS (NM_028179)	1055.0	NM_028179	72275.0	Mm.441142	NM_028179	ENSMUSG00000030587	2200002D01Rik	2010005J02Rik|H2RSP|IMUP|IMUP-1|IMUP-2	RIKEN cDNA 2200002D01 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-89382614-1	chr13	89382514	89382714	+	604.0	f1_c57bl6.idr	Intergenic	RMER13B|LTR|ERVK	-158022.0	NM_013500	12950.0	Mm.266790	NM_013500	ENSMUSG00000021613	Hapln1	BB099155|CLP|Crtl1|Crtl1l|LP|LP-1	hyaluronan and proteoglycan link protein 1	protein-coding	-0.328453122170913	-0.315690566639336	0.127742149867008	0.295883941433331	-0.327658522226262	-0.120602477762879	-0.318956294257205	-0.322542921585773	-2.68939504856397	0.276907266716926	1
Merged-chr6-136809305-4	chr6	136809198	136809398	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177688, exon 1 of 1)	3' UTR (NM_177688, exon 1 of 1)	1050.0	NM_177688	232440.0	Mm.154564	NM_177688	ENSMUSG00000060032	H2afj	E130307C13	H2A histone family, member J	protein-coding	0.473435721636393	0.508916250155966	1.63428178984235	0.991162604209792	0.933322715367061	0.511463659394709	0.500034860178883	1.23268883110029	-0.72870711246241	0.668737155466426	0.993344020005271
Merged-chr7-45395818-4	chr7	45395714	45395914	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009224)	promoter-TSS (NM_009224)	-72.0	NR_126538	20637.0	Mm.216386	NM_009224	ENSMUSG00000063511	Snrnp70	2700022N21Rik|3200002N22Rik|AI325098|R74807|Rnu1p70|Rnulp70|Snrp70|Srnp70|U1-70|U1-70K	small nuclear ribonucleoprotein 70 (U1)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-106769965-1	chr9	106769865	106770065	+	711.0	f0_balb.idr	intron (NM_030730, intron 1 of 21)	intron (NM_030730, intron 1 of 21)	19248.0	NM_030730	81000.0	Mm.246689	NM_030730	ENSMUSG00000040661	Rad54l2	Arip4|D130058C05|G630026H09Rik|Srisnf2l	RAD54 like 2 (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-35042083-4	chr12	35041968	35042168	+	978.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5121.0	NM_001014973	217463.0	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	2.93844160721015	2.67175438707641	3.89921351946524	3.27620020937759	2.96354862606691	2.69236142042891	3.92727309465201	3.29292471824356	0.0378245940000167	0.952743651896554	0.998431161219273
Merged-chr15-39616894-4	chr15	39616766	39616966	+	915.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053271, intron 22 of 26)	intron (NM_053271, intron 22 of 26)	-42645.0	NM_001256384	116838.0	Mm.309296	NM_053271	ENSMUSG00000037386	Rims2	2810036I15Rik|AW048769|RIM2|Rab3ip2|Rim2(+40A)|Rim2(+44A)|Rim2(+4A)|Serg2|Syt3-rs|mKIAA0751	regulating synaptic membrane exocytosis 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-41170163-4	chr9	41170057	41170257	+	882.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12095.0	NM_176860	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	0.894351085898091	0.269722662212153	0.263073335708055	0.25793440776456	0.825464788928639	0.469109174459044	0.264540953321156	0.801075226976383	0.907399248510286	0.640577964369779	1
Merged-chr7-143045011-2	chr7	143044901	143045101	+	878.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_110355, intron 1 of 4)	B3|SINE|B2	-7749.0	NM_133655	12520.0	Mm.806	NM_133655	ENSMUSG00000037706	Cd81	Tapa-1|Tapa1|Tspan28	CD81 antigen	protein-coding	1.59000052789656	1.15827331812376	1.8597566705598	2.03280080321801	2.03371970775015	2.18795016409479	1.14052372390855	2.23052989383323	0.747371808920489	0.501864014810903	0.938491965352433
Merged-chr14-66282815-4	chr14	66282708	66282908	+	852.6749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1756.0	NM_001162365	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	2.8817881488499	2.53783336027093	2.5754491037302	2.79891292716866	2.76011507767157	2.41319752351022	1.51991733918428	2.97454862099852	-0.344278458700755	0.668494882893146	0.99330435992635
Merged-chr3-144572369-4	chr3	144572283	144572483	+	834.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053102, intron 1 of 4)	intron (NM_053102, intron 1 of 4)	1956.0	NM_053102	93684.0	Mm.29812	NM_053102	ENSMUSG00000037072	Selenof	9430015P09Rik|Sep15	selenoprotein F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-31191331-2	chr5	31191231	31191431	+	685.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001127356, intron 4 of 11)	intron (NM_001127356, intron 4 of 11)	1808.0	NM_001127355	13667.0	Mm.29394	NM_010122	ENSMUSG00000029145	Eif2b4	Eif2b	eukaryotic translation initiation factor 2B, subunit 4 delta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70951878-2	chr14	70951790	70951990	+	753.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001302094, intron 3 of 7)	intron (NM_001302094, intron 3 of 7)	61783.0	NM_001302094	14586.0	Mm.32619	NM_008115	ENSMUSG00000022103	Gfra2	-	glial cell line derived neurotrophic factor family receptor alpha 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-98742107-2	chr12	98742007	98742207	+	596.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-4702.0	NM_001146199	24000.0	Mm.4420	NM_011877	ENSMUSG00000021009	Ptpn21	PTPD1|PTPRL10	protein tyrosine phosphatase, non-receptor type 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128091127-4	chr10	128091029	128091229	+	993.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_016774)	TTS (NM_016774)	-1654.0	NM_054078	116848.0	Mm.252213	NM_054078	ENSMUSG00000040054	Baz2a	AA415431|C030005G16Rik|C78388|Tip5|Walp3|mKIAA0314	bromodomain adjacent to zinc finger domain, 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-81241290-4	chr13	81241198	81241398	+	996.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 85 of 89)	intron (NM_054053, intron 85 of 89)	277224.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65582898-2	chr9	65582799	65582999	+	823.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2812.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	0.685360116225136	0.843110208606746	0.226019002827766	0.221130335926545	0.214219001906536	0.73292001969512	0.22741625894358	0.529521521598626	-0.520761242966552	0.790578756006212	1
Merged-chr11-70525892-2	chr11	70525792	70525992	+	815.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_008946, exon 2 of 6)	exon (NM_008946, exon 2 of 6)	535.0	NM_008946	19175.0	Mm.98	NM_008946	ENSMUSG00000018286	Psmb6	Lmp19|Mpnd	proteasome (prosome, macropain) subunit, beta type 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-55052684-4	chr1	55052584	55052784	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026424)	promoter-TSS (NM_026424)	-86.0	NM_026424	67876.0	Mm.281019	NM_026424	ENSMUSG00000025981	Coq10b	1500041J02Rik|1700030I21Rik|9530077A17Rik|AV002237|AW742641	coenzyme Q10B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65563870-2	chr9	65563770	65563970	+	926.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153119, intron 3 of 5)	intron (NM_153119, intron 3 of 5)	16217.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-20027523-4	chr3	20027423	20027623	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080634, intron 4 of 16)	intron (NM_080634, intron 4 of 16)	7787.0	NM_001146324	12807.0	Mm.291533	NM_080634	ENSMUSG00000027615	Hps3	coa	HPS3, biogenesis of lysosomal organelles complex 2 subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-37317392-2	chr10	37317292	37317492	+	725.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16B1|LTR|ERVL	-178466.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-64093575-2	chr9	64093475	64093675	+	569.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12814.0	NR_040743	76814.0	Mm.243771	NR_040743		Scarletltr	2600006L11Rik	Scarletltr, erythroid developmental long intergenic non-protein coding transcript	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-66473190-4	chr18	66473087	66473287	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14583.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	4.94353581686967	5.02026434004968	3.72082708827992	5.34838847229271	3.94695309744843	4.88785830429559	3.55534045656036	4.37211669719469	-0.757218350023705	0.0943833213626285	0.475550312581511
Merged-chr6-91713998-2	chr6	91713898	91714098	+	998.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009320, intron 2 of 14)	intron (NM_009320, intron 2 of 14)	29931.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-68160760-7	chr18	68160660	68160860	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172631, intron 3 of 5)	intron (NM_172631, intron 3 of 5)	-67186.0	NM_001357444	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	-0.8258122013151	-0.944464117163028	-0.787784585839641	-0.955874029686626	-0.822268257127585	-0.942029028158835	-0.640384637441505	-0.955550051372555	0.644439591529674	0.816632649073854	1
Merged-chr17-28177879-2	chr17	28177779	28177979	+	858.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357995, intron 1 of 13)	intron (NM_001357995, intron 1 of 13)	461.0	NM_172617	224656.0	Mm.267359	NM_172617	ENSMUSG00000024220	Zfp523	2810027J07|BC025615|Znf76	zinc finger protein 523	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-86165447-2	chr15	86165337	86165537	+	678.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_145475, intron 2 of 12)	intron (NM_145475, intron 2 of 12)	-20291.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-119890627-2	chr7	119890527	119890727	+	879.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163703, intron 1 of 2)	intron (NM_001163703, intron 1 of 2)	4831.0	NM_173408	233805.0	Mm.31539	NM_173408	ENSMUSG00000048787	Dcun1d3	1700020A13Rik|BC030335	DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-70879883-2	chr6	70879783	70879983	+	655.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010121, intron 4 of 16)	intron (NM_010121, intron 4 of 16)	35368.0	NM_001313918	13666.0	Mm.247167	NM_010121	ENSMUSG00000031668	Eif2ak3	Pek|Perk	eukaryotic translation initiation factor 2 alpha kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53303726-3	chr4	53303613	53303813	+	731.866699	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33481.0	NR_033139	381524.0	Mm.23351	NM_001033454	ENSMUSG00000086712	AI427809	Gm1659	expressed sequence AI427809	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-115682979-4	chr3	115682881	115683081	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32074.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-61595583-4	chr2	61595459	61595659	+	724.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149323, intron 2 of 9)	intron (NR_149323, intron 2 of 9)	2462.0	NR_149323	21353.0	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-84557233-1	chr2	84557133	84557333	+	644.0	f0_balb.idr	Intergenic	Intergenic	-50360.0	NR_046046	672763.0	Mm.491046	NR_046046	ENSMUSG00000087362	Gm13710	-	predicted gene 13710	ncRNA	-0.574497556494685	-0.912126659144096	-0.753770558147131	-0.921867980102149	-0.670542751572653	-0.909641955277536	-0.919417005742857	-0.921535887297577	-0.894788140061727	0.762184884914662	1
Merged-chr13-44937917-4	chr13	44937810	44938010	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025772, intron 7 of 9)	RMER17C2|LTR|ERVK	64186.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-146328138-4	chr3	146328057	146328257	+	910.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50787.0	NR_033542	100038607.0	Mm.365888	NR_033542	ENSMUSG00000105602	Gm10636	-	predicted gene 10636	ncRNA	4.54820618741548	3.56945441431319	3.44562652314786	3.02835574611719	4.55059515808879	3.93498379619372	3.94538055025968	2.45115463216538	0.182501509943926	0.762812241480534	0.998431161219273
Merged-chr5-38092073-1	chr5	38091973	38092173	+	649.0	f0_balb.idr	intron (NM_001359398, intron 1 of 9)	intron (NM_001359398, intron 1 of 9)	52843.0	NM_026959	71116.0	Mm.18959	NM_026959	ENSMUSG00000029125	Stx18	1810035L21Rik|4933425D03Rik|AU041562	syntaxin 18	protein-coding	-0.413270832553205	0.248879758316469	-0.403519686790488	-0.4071766335812	-0.41236239857827	0.260274020124072	-0.402476173372258	-0.406537021983025	0.0394809277679939	0.98817139586833	1
Merged-chr11-114968191-1	chr11	114968091	114968291	+	779.0	f1_c57bl6.idr	Intergenic	Intergenic	-7774.0	NM_199225	387565.0	Mm.351450	NM_199225	ENSMUSG00000058728	Cd300c	Clm6	CD300C molecule	protein-coding	2.51496076819391	1.83850746819563	2.55730611408104	1.29927561511413	2.07814668544511	2.7602134315223	2.37248077906195	1.90973129865468	0.360246212328983	0.702979516799402	0.998431161219273
Merged-chr2-158174685-4	chr2	158174604	158174804	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17304.0	NR_036606	73399.0	Mm.416861	NR_036606	ENSMUSG00000078957	1700060C20Rik	-	RIKEN cDNA 1700060C20 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-8239704-4	chr8	8239595	8239795	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	421078.0	NM_010111	13642.0	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-46606794-2	chr4	46606694	46606894	+	875.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198664, intron 11 of 12)	intron (NM_198664, intron 11 of 12)	-4865.0	NM_001164804	107684.0	Mm.416311	NM_178893	ENSMUSG00000028337	Coro2a	9030208C03Rik|AI563590|IR10	coronin, actin binding protein 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127603860-4	chr10	127603692	127603892	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 6 of 88)	intron (NM_008512, intron 6 of 88)	17356.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	2.73176456611233	3.06565867408432	2.22737509020701	2.29812358489359	2.89176464524629	1.45273759159849	1.68122301364574	2.81575118943572	-0.483776756550013	0.588233387228749	0.968410553480753
Merged-chr2-148655165-4	chr2	148655064	148655264	+	870.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17451.0	NM_019761	56488.0	Mm.34663	NM_019761	ENSMUSG00000036992	Nxt1	1110001N02Rik	NTF2-related export protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101857243-3	chr7	101857113	101857313	+	667.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001303239)	promoter-TSS (NM_001303239)	-23.0	NM_001303239	14276.0	Mm.439666	NM_008035	ENSMUSG00000032725	Folr2	FBP2|FR-P3|FR-beta|Folbp-2|Folbp2	folate receptor 2 (fetal)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80246756-2	chr10	80246656	80246856	+	815.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 1 of 4)	intron (NR_038088, intron 1 of 4)	-2696.0	NM_029272	75406.0	Mm.28712	NM_029272	ENSMUSG00000020153	Ndufs7	1010001M04Rik	NADH dehydrogenase (ubiquinone) Fe-S protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-63832293-2	chr5	63832193	63832393	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029554, intron 1 of 3)	intron (NM_029554, intron 1 of 3)	19798.0	NM_029554	76261.0	Mm.38143	NM_029554	ENSMUSG00000060512	0610040J01Rik	AI662686	RIKEN cDNA 0610040J01 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-37540769-2	chr13	37540669	37540869	+	956.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	195424.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-98013444-4	chr3	98013321	98013521	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010928)	promoter-TSS (NM_010928)	-117.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-60736636-4	chr13	60736539	60736739	+	995.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 18 of 26)	intron (NM_134062, intron 18 of 26)	49725.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-57765615-4	chr6	57765513	57765713	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146168, intron 3 of 4)	intron (NM_146168, intron 3 of 4)	59512.0	NM_146168	232023.0	Mm.24642	NM_146168	ENSMUSG00000037788	Vopp1	AW146242|Ecop	vesicular, overexpressed in cancer, prosurvival protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-153835039-1	chr4	153834939	153835139	+	753.0	f0_balb.idr	Intergenic	Intergenic	115437.0	NR_040670	407793.0	Mm.260950	NR_040670		BC039966	-	cDNA sequence BC039966	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-77376178-2	chr11	77376078	77376278	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291190, intron 1 of 13)	intron (NM_001291190, intron 1 of 13)	27898.0	NM_001291190	237860.0	Mm.440381	NM_177710	ENSMUSG00000037926	Ssh2	SSH-2|SSH-2L|mSSH-2L	slingshot protein phosphatase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-142437376-2	chr7	142437306	142437506	+	869.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285861, intron 1 of 8)	intron (NM_001285861, intron 1 of 8)	572.0	NM_001285861	55925.0	Mm.213002	NM_018802	ENSMUSG00000031098	Syt8	-	synaptotagmin VIII	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-54118561-4	chr10	54118492	54118692	+	831.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42670.0	NR_038016	100502920.0	Mm.403982	NR_038016	ENSMUSG00000097069	Gm16998	-	predicted gene, 16998	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-88894225-4	chr18	88894141	88894341	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018821)	promoter-TSS (NM_018821)	-34.0	NM_018821	54607.0	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-100320354-2	chr12	100320254	100320454	+	597.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033213, intron 19 of 19)	intron (NM_001033213, intron 19 of 19)	43745.0	NR_045741	100038713.0	Mm.470751	NR_045741	ENSMUSG00000113679	Gm10432	-	predicted gene 10432	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-156669285-2	chr1	156669160	156669360	+	678.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_023141, intron 3 of 5)	intron (NM_023141, intron 3 of 5)	5079.0	NM_023141	30935.0	Mm.206737	NM_023141	ENSMUSG00000060519	Tor3a	Adir	torsin family 3, member A	protein-coding	0.549032732607315	0.586738884112406	1.35339473806957	0.565110342160239	1.01072260833643	1.43151242407252	0.577304985242447	1.50140035124567	1.56297170435745	0.345293331832434	0.845935760003855
Merged-chr7-127273267-3	chr7	127273141	127273341	+	943.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009266, exon 1 of 1)	exon (NM_009266, exon 1 of 1)	818.0	NM_009266	20768.0	Mm.20294	NM_009266	ENSMUSG00000049091	Sephs2	Sps2|Ysg3	selenophosphate synthetase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-130828937-2	chr4	130828837	130829037	+	999.583374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36400.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126481994-3	chr8	126481921	126482121	+	814.8095089999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6956.0	NM_001159907	212728.0	Mm.482479	NM_001159907	ENSMUSG00000090290	Tarbp1	Gm17296|Gm179	TAR RNA binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117066518-2	chr8	117066418	117066618	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029686, intron 6 of 42)	intron (NM_029686, intron 6 of 42)	15931.0	NM_029686	76645.0	Mm.159753	NM_029686	ENSMUSG00000034416	Pkd1l2	1700126L06Rik	polycystic kidney disease 1 like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-84967583-4	chr2	84967471	84967671	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12890.0	NM_008920	19074.0	Mm.142727	NM_008920	ENSMUSG00000027073	Prg2	EMBP|MBP|mMBP|mMBP-1	proteoglycan 2, bone marrow	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52021010-2	chr13	52020910	52021110	+	597.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-75731.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-152884158-3	chr3	152884067	152884267	+	973.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012028, intron 2 of 4)	intron (NM_012028, intron 2 of 4)	98040.0	NM_012028	26938.0	Mm.40915	NM_012028	ENSMUSG00000039037	St6galnac5	AI851940|Siat7e	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	protein-coding	-0.882171349670362	-0.998162802578616	-1.00902956391741	-1.01184558778003	-0.761164541745715	-0.995807930064722	-0.840388923417453	-0.856111853299699	1.63933314648466	0.555339291801498	1
Merged-chr16-97593243-4	chr16	97593148	97593348	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015775, intron 3 of 13)	B3|SINE|B2	17947.0	NM_015775	50528.0	Mm.276145	NM_015775	ENSMUSG00000000385	Tmprss2	D16Ertd61e	transmembrane protease, serine 2	protein-coding	5.05148314635525	5.28556402909161	4.57593013419854	4.89433695815912	5.3180627363401	5.45311519720742	5.19993464703366	4.87875105420866	0.298014503489676	0.345970847072112	0.846788703217298
Merged-chr4-117213154-2	chr4	117213054	117213254	+	765.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001145637)	TTS (NM_001145637)	-30530.0	NM_134471	73804.0	Mm.247651	NM_134471	ENSMUSG00000028678	Kif2c	4930402F02Rik|ESTM5|Knsl6|MCAK|X83316	kinesin family member 2C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125329321-2	chr6	125329221	125329421	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011324, intron 1 of 11)	B3|SINE|B2	7981.0	NM_011324	20276.0	Mm.144114	NM_011324	ENSMUSG00000030340	Scnn1a	ENaC|SCNEA|Scnn1|mENaC	sodium channel, nonvoltage-gated 1 alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-8747957-4	chr10	8747858	8748058	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 10 of 19)	intron (NM_175155, intron 10 of 19)	138112.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-88640099-2	chr17	88639999	88640199	+	561.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029858, intron 2 of 3)	L1VL2|LINE|L1	13544.0	NM_029858	77057.0	Mm.482203	NM_029858	ENSMUSG00000033855	Ston1	4921524J06Rik|C86231|Salf|Sblf	stonin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111413521-4	chr12	111413428	111413628	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3902.0	NM_001289487	74190.0	Mm.248640	NM_028807	ENSMUSG00000021280	Exoc3l4	1200009I06Rik|1600013K19Rik	exocyst complex component 3-like 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-74368470-4	chr1	74368365	74368565	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001033345, exon 10 of 10)	exon (NM_001033345, exon 10 of 10)	6357.0	NM_001033345	241112.0	Mm.310460	NM_001033345	ENSMUSG00000073650	Catip	Gm216	ciliogenesis associated TTC17 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-65608902-1	chr6	65608802	65609002	+	694.0	f0_balb.idr	intron (NM_001001495, intron 6 of 7)	intron (NM_001001495, intron 6 of 7)	18504.0	NM_001001495	414084.0	Mm.117558	NM_001001495	ENSMUSG00000044162	Tnip3	9030611K07Rik|ABIN-3|LIND	TNFAIP3 interacting protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-58578869-4	chr9	58578761	58578961	+	895.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3379.0	NM_001293673	20320.0	Mm.15125	NM_009145	ENSMUSG00000032336	Nptn	AW554172|SDR-1|Sdfr1	neuroplastin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85659526-4	chr12	85659395	85659595	+	922.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27225.0	NM_016767	53314.0	Mm.6672	NM_016767	ENSMUSG00000034266	Batf	B-ATF|SFA-2	basic leucine zipper transcription factor, ATF-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70787202-4	chr11	70787105	70787305	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT-int|LTR|ERVL-MaLR	22758.0	NM_177565	193043.0	Mm.40966	NM_177565	ENSMUSG00000043602	Zfp3	AI854635|B230309J24|Fnp-1|Zfp-3	zinc finger protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-24687931-4	chr5	24687826	24688026	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305264, intron 1 of 14)	intron (NM_001305264, intron 1 of 14)	2111.0	NM_001305264	53312.0	Mm.5856	NM_016736	ENSMUSG00000028954	Nub1	4931404D21Rik|6330412F12Rik|BS4|NY-REN-18	negative regulator of ubiquitin-like proteins 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36079851-4	chr1	36079758	36079958	+	882.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015818, intron 1 of 1)	intron (NM_015818, intron 1 of 1)	11458.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-80832401-4	chr12	80832316	80832516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178682, intron 2 of 5)	intron (NM_178682, intron 2 of 5)	41884.0	NM_001242419	217684.0	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-88248807-1	chr1	88248707	88248907	+	617.0	f0_balb.idr	intron (NM_001281466, intron 27 of 41)	intron (NM_001281466, intron 27 of 41)	20601.0	NR_040291	78605.0	Mm.384762	NR_040291		6430706D22Rik	-	RIKEN cDNA 6430706D22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-137739335-3	chr4	137739224	137739424	+	615.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J1|LTR|ERVL-MaLR	14863.0	NR_138592	110351.0	Mm.180763	NM_029563	ENSMUSG00000041351	Rap1gap	1300019I11Rik|2310004O14Rik|AI427470|ARPP-90|Gap|Rap1GAP1|Rap1ga1	Rap1 GTPase-activating protein	protein-coding	3.10291766375565	3.71597962224304	1.96160894888993	3.94828059811828	2.95624341113699	3.41860238072761	2.87484016433164	3.58164832290702	-0.222539312905608	0.738945889018453	0.998431161219273
Merged-chr10-40524242-2	chr10	40524142	40524342	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-46120.0	NM_027572	70840.0	Mm.332570	NM_027572	ENSMUSG00000019834	Slc22a16	4921504E14Rik|CT2|FLIPT2|OCT6|OKB1	solute carrier family 22 (organic cation transporter), member 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-64344324-3	chr13	64344229	64344429	+	732.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26191.0	NM_009984	13039.0	Mm.930	NM_009984	ENSMUSG00000021477	Ctsl	1190035F06Rik|CatL|Ctsl1|MEP|fs|nkt	cathepsin L	protein-coding	2.49467597278522	2.28232722139943	1.21243773769575	2.13905786882237	1.54405350954009	2.18018804444887	1.46217030396229	2.15038117403805	-0.633084993695647	0.539573143653957	0.954403851908463
Merged-chr1-134416872-4	chr1	134416787	134416987	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001306069, intron 1 of 7)	intron (NM_001306069, intron 1 of 7)	1223.0	NM_001306069	72674.0	Mm.259976	NM_028320	ENSMUSG00000026457	Adipor1	2810031L11Rik|ACDCR1|CGI-45|Paqr1	adiponectin receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-70945100-3	chr2	70944995	70945195	+	840.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	73279.0	NM_001110512	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19327322-4	chr7	19327209	19327409	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17264.0	NM_001347586	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-69407019-1	chr18	69406919	69407119	+	541.0	f0_c57.idr	intron (NM_001361128, intron 3 of 19)	intron (NM_001361128, intron 3 of 19)	60859.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-60042902-4	chr1	60042780	60042980	+	817.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_027407, exon 1 of 11)	5' UTR (NM_027407, exon 1 of 11)	242.0	NM_001357296	70375.0	Mm.17834	NM_027407	ENSMUSG00000026018	Ica1l	1700030B17Rik|Als2cr15|b2b3465Clo	islet cell autoantigen 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-115717826-4	chr6	115717715	115717915	+	948.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41180.0	NM_029780	110157.0	Mm.184163	NM_029780	ENSMUSG00000000441	Raf1	6430402F14Rik|AA990557|BB129353|Craf1|D830050J10Rik|Raf-1|c-Raf|cRaf|v-Raf	v-raf-leukemia viral oncogene 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-17249279-4	chr16	17249196	17249396	+	909.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178922, intron 1 of 2)	intron (NM_178922, intron 1 of 2)	15709.0	NM_178922	58180.0	Mm.261602	NM_178922	ENSMUSG00000050240	Hic2	AA409108|HRG22|mKIAA1020	hypermethylated in cancer 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-132316835-5	chr1	132316670	132316870	+	933.4400019999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195025, intron 1 of 7)	intron (NM_001195025, intron 1 of 7)	645.0	NM_028778	74137.0	Mm.100666	NM_028778	ENSMUSG00000009772	Nuak2	1200013B22Rik|Omphk2|Snark|mKIAA0537	NUAK family, SNF1-like kinase, 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-29660603-4	chr17	29660493	29660693	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028791)	promoter-TSS (NM_028791)	-2.0	NM_028791	74157.0	Mm.390979	NM_028791	ENSMUSG00000024019	Cmtr1	1300018I05Rik|AI451264|Ftsjd2|MTr1	cap methyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-142744202-3	chr3	142744098	142744298	+	764.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001293560, exon 14 of 14)	3' UTR (NM_001293560, exon 14 of 14)	-21049.0	NM_145546	229906.0	Mm.271756	NM_145546	ENSMUSG00000028271	Gtf2b	-	general transcription factor IIB	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-144224696-2	chr2	144224596	144224796	+	580.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MCa|LINE|L1	-35406.0	NR_136884	433481.0	Mm.330630	NR_136884	ENSMUSG00000074758	Gm5535	EG433481	predicted gene 5535	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-20890980-2	chr9	20890880	20891080	+	804.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_145610, exon 7 of 11)	exon (NM_145610, exon 7 of 11)	2805.0	NM_145610	235036.0	Mm.2930	NM_145610	ENSMUSG00000004100	Ppan	A230087P06Rik|SSF1	peter pan homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-117146394-4	chr4	117146293	117146493	+	978.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8181.0	NR_028524	100217424.0		NR_028524	ENSMUSG00000065680	Snord38a	MBII-329	small nucleolar RNA, C/D box 38A	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4098586-4	chr19	4098466	4098666	+	994.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_026373, exon 4 of 4)	3' UTR (NM_026373, exon 4 of 4)	1215.0	NM_026373	52004.0	Mm.29609	NM_026373	ENSMUSG00000024856	Cdk2ap2	5830466O21Rik|D19Ertd144e|Doc-1r	CDK2-associated protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-81910687-3	chr12	81910584	81910784	+	942.2000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018814, intron 3 of 35)	intron (NM_018814, intron 3 of 35)	50654.0	NM_018814	54604.0	Mm.86584	NM_018814	ENSMUSG00000021140	Pcnx	2900024E21Rik|3526401J03Rik|AF096286|AI327143|AI413187|Pcnx1|Pcnxl1	pecanex homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-106813920-3	chr7	106813778	106813978	+	762.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360747)	promoter-TSS (NM_001360747)	-251.0	NM_028910	66786.0	Mm.159186	NM_028910	ENSMUSG00000036744	Olfr701	4932441H21Rik|4933433E02Rik|MOR283-1	olfactory receptor 701	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-45630544-4	chr16	45630446	45630646	+	727.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145389, intron 4 of 5)	intron (NM_145389, intron 4 of 5)	20106.0	NM_001159297	14525.0	Mm.4799	NM_008099	ENSMUSG00000022659	Gcsam	Gcet|Gcet2|M17|M17-L	germinal center associated, signaling and motility	protein-coding	1.30486226311485	1.25504798692891	1.439211232416	0.693717781438332	1.48761527769109	0.716736095734909	0.70522607085735	1.03938174790258	-0.692441548971843	0.646228646994978	0.984116759910594
Merged-chr10-77530289-4	chr10	77530184	77530384	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008404)	promoter-TSS (NM_008404)	-64.0	NM_008404	16414.0	Mm.1137	NM_008404	ENSMUSG00000000290	Itgb2	2E6|AI528527|Cd18|LAD|LCAMB|Lfa1|MF17	integrin beta 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-65664905-3	chr16	65664801	65665001	+	893.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	-102204.0	NM_026879	68942.0	Mm.432944	NM_026879	ENSMUSG00000004843	Chmp2b	1190006E07Rik	charged multivesicular body protein 2B	protein-coding	-1.20406370813143	-1.56956373024278	-1.57884638916872	-1.58647144159385	-1.598104728449	-1.56755213932999	-1.57674499865798	-1.58510656085539	-1.70745470802464	0.626337835847419	1
Merged-chr7-107603702-2	chr7	107603602	107603802	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008905, intron 1 of 24)	intron (NM_008905, intron 1 of 24)	-3142.0	NM_001163557	19024.0	Mm.2817	NM_008905	ENSMUSG00000036528	Ppfibp2	Cclp1	PTPRF interacting protein, binding protein 2 (liprin beta 2)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-123905940-1	chr1	123905840	123906040	+	646.0	f0_balb.idr	intron (NM_199021, intron 1 of 25)	intron (NM_199021, intron 1 of 25)	139619.0	NM_199021	269109.0	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	3.18344529579228	4.09116370400045	3.46285674970249	3.36286101177488	4.5255164687098	3.69824372292847	1.73577360436058	3.54244382044629	0.203851907180221	0.761462165334166	0.998431161219273
Merged-chr3-51256097-2	chr3	51255997	51256197	+	669.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001291063, exon 7 of 7)	3' UTR (NM_001291063, exon 7 of 7)	-20664.0	NR_073429	67746.0	Mm.441177	NR_073429	ENSMUSG00000087440	4930577N17Rik	-	RIKEN cDNA 4930577N17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-152474783-4	chr3	152474669	152474869	+	867.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081277, intron 12 of 13)	intron (NM_001081277, intron 12 of 13)	78085.0	NM_001287139	108946.0	Mm.379292	NM_198416	ENSMUSG00000039068	Zzz3	3110065C23Rik|6430567E01Rik|AA408566|AI481057|AW556059|R75514	zinc finger, ZZ domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28698335-4	chr17	28698244	28698444	+	976.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168514, intron 2 of 12)	intron (NM_001168514, intron 2 of 12)	5776.0	NM_001357724	26416.0	Mm.311337	NM_011951	ENSMUSG00000053436	Mapk14	CSBP2|Crk1|Csbp1|Mxi2|PRKM14|PRKM15|p38|p38-alpha|p38MAPK|p38a|p38alpha	mitogen-activated protein kinase 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91909510-2	chr16	91909410	91909610	+	719.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010587, intron 38 of 38)	intron (NM_010587, intron 38 of 38)	22120.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-34536747-2	chr5	34536647	34536847	+	649.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011893, intron 1 of 12)	intron (NM_011893, intron 1 of 12)	-6618.0	NM_001145858	24055.0	Mm.5012	NM_011893	ENSMUSG00000054520	Sh3bp2	3BP2	SH3-domain binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-101870589-2	chr14	101870489	101870689	+	566.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347628, intron 1 of 26)	(TG)n|Simple_repeat|Simple_repeat	29966.0	NM_001347628	380928.0	Mm.218981	NM_201529	ENSMUSG00000033060	Lmo7	C78582|FBXO20|Gm914|mKIAA0858	LIM domain only 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-35932377-4	chr16	35932294	35932494	+	960.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001013371, exon 3 of 5)	exon (NM_001013371, exon 3 of 5)	-6076.0	NM_030253	80285.0	Mm.49074	NM_030253	ENSMUSG00000022906	Parp9	ARTD9|AW214463|BC003281|Bagl|Bal|PARP-9	poly (ADP-ribose) polymerase family, member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-31530557-1	chr15	31530457	31530657	+	1000.0	f0_balb.idr	intron (NM_172606, intron 1 of 25)	CpG	480.0	NM_172606	223455.0	Mm.272185	NM_172606	ENSMUSG00000039100	March6	3830408G03|F830029L24Rik|mKIAA0597	membrane-associated ring finger (C3HC4) 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5936444-4	chr17	5936352	5936552	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	-4828.0	NM_001113353	20975.0	Mm.236068	NM_011523	ENSMUSG00000023805	Synj2	AI481647|SJ2|mKIAA0348	synaptojanin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-43012905-4	chr17	43012801	43013001	+	760.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-3654.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	3.33637893302505	3.31326443680485	1.97311388872481	3.00834677752563	3.93828120146913	2.99259498598637	3.32045800431292	3.98417230452591	0.980465669638894	0.121503388220982	0.547083517037748
Merged-chr2-22778903-2	chr2	22778803	22779003	+	942.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019456, intron 1 of 13)	intron (NM_019456, intron 1 of 13)	4576.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-99233269-3	chr5	99233120	99233320	+	715.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181318, intron 6 of 13)	intron (NM_181318, intron 6 of 13)	19707.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81545317-4	chr10	81545232	81545432	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010301)	promoter-TSS (NM_010301)	-286.0	NM_010301	14672.0	Mm.260925	NM_010301	ENSMUSG00000034781	Gna11	Dsk7|E430025L19	guanine nucleotide binding protein, alpha 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-113872187-2	chr13	113872087	113872287	+	654.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172595, intron 1 of 4)	intron (NM_172595, intron 1 of 4)	77679.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-78198924-4	chr16	78198802	78199002	+	962.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER119|DNA|hAT-Charlie	56552.0	NR_045698	100503619.0	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-130129182-4	chr10	130129088	130129288	+	903.974976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2133.0	NM_146674	258669.0	Mm.377631	NM_146674	ENSMUSG00000095804	Olfr824	MOR210-3	olfactory receptor 824	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-37299824-4	chr1	37299751	37299951	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290797)	promoter-TSS (NM_001290797)	13.0	NM_001290797	269180.0	Mm.5294	NM_030266	ENSMUSG00000026113	Inpp4a	107kDa|9630012D15|D130048C09Rik|R74740	inositol polyphosphate-4-phosphatase, type I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-45573904-4	chr17	45573818	45574018	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008302)	promoter-TSS (NM_008302)	-657.0	NM_008302	15516.0	Mm.2180	NM_008302	ENSMUSG00000023944	Hsp90ab1	90kDa|AL022974|C81438|Hsp84|Hsp84-1|Hsp90|Hspcb	heat shock protein 90 alpha (cytosolic), class B member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-51920416-2	chr11	51920316	51920516	+	762.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47215.0	NM_029976	52626.0	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-155098128-4	chr1	155098035	155098235	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010500, exon 1 of 1)	3' UTR (NM_010500, exon 1 of 1)	1501.0	NM_010500	15939.0	Mm.12246	NM_010500	ENSMUSG00000056708	Ier5	-	immediate early response 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-97453283-2	chr7	97453183	97453383	+	620.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001010826)	promoter-TSS (NM_001010826)	79.0	NM_001012434	233529.0	Mm.334033	NM_001010826	ENSMUSG00000051727	Kctd14	AI449310|D7Ertd760e	potassium channel tetramerisation domain containing 14	protein-coding	-0.643947544515173	-0.633099188729109	-0.0641239051495042	-0.639399037742312	-0.643271268608958	-0.632296893744128	-0.168615286170003	-0.638920067900268	-0.377261004685945	0.896083238598253	1
Merged-chr10-62202674-1	chr10	62202574	62202774	+	548.0	f1_balb.idr	intron (NM_197996, intron 2 of 7)	intron (NM_197996, intron 2 of 7)	-8447.0	NR_106122	102465767.0		NR_106122	ENSMUSG00000099185	Mir7662	Gm27876|mmu-mir-7662	microRNA 7662	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-118664433-4	chr14	118664324	118664524	+	901.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033336, intron 3 of 30)	MTC|LTR|ERVL-MaLR	12507.0	NM_001163675	239273.0	Mm.40537	NM_001033336	ENSMUSG00000032849	Abcc4	ABCC4-N1|D630049P08Rik|MOATB|MRP4	ATP-binding cassette, sub-family C (CFTR/MRP), member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-140790561-4	chr2	140790465	140790665	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013802, intron 3 of 18)	intron (NM_001013802, intron 3 of 18)	-119089.0	NM_178382	71436.0	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128298133-1	chr2	128298033	128298233	+	871.0	f1_c57bl6.idr	TTS (NR_028589)	TTS (NR_028589)	131218.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	-0.122262515925234	-0.103342407578405	0.879537765580424	0.2184025909925	-0.121069685260133	-0.10196044974659	-0.108136624168881	0.223319114433431	-2.33032519673961	0.307280469954979	1
Merged-chr9-120011263-4	chr9	120011168	120011368	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	12330.0	NM_011724	22437.0	Mm.10117	NM_011724	ENSMUSG00000079243	Xirp1	AI415219|Cmya1	xin actin-binding repeat containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-82761776-6	chr1	82761690	82761890	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025453, intron 2 of 3)	intron (NM_025453, intron 2 of 3)	6666.0	NM_025453	66261.0	Mm.46325	NM_025453	ENSMUSG00000026149	Tm4sf20	1810018L02Rik	transmembrane 4 L six family member 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-15364305-2	chr9	15364205	15364405	+	641.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-6517.0	NM_176976	319675.0	Mm.218317	NM_176976	ENSMUSG00000046111	Cep295	5830418K08Rik|5832426L23Rik|Gm1131|Kiaa1731	centrosomal protein 295	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-37062879-2	chr8	37062779	37062979	+	956.416626	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38641.0	NR_126063	414128.0	Mm.450976	NR_126063	ENSMUSG00000110242	G630064G18Rik	-	RIKEN cDNA G630064G18 gene	ncRNA	4.89137269400804	4.3753466135275	2.96914400454644	4.41524916092705	2.72611386929054	2.6518014927444	1.87882516423271	2.05010264319453	-2.99916524931366	4.4633182896723e-06	0.000230161430542213
Merged-chr18-53312146-4	chr18	53312041	53312241	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029394, intron 1 of 6)	ORR1D2|LTR|ERVL-MaLR	66479.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-120159337-4	chr6	120159221	120159421	+	930.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016718, intron 1 of 3)	intron (NM_016718, intron 1 of 3)	-34502.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120356528-2	chr11	120356428	120356628	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5006.0	NM_172802	238021.0	Mm.481403	NM_172802	ENSMUSG00000025380	Fscn2	A930022G03|Ahl8|C630046B20Rik	fascin actin-bundling protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-145199396-2	chr4	145199296	145199496	+	639.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4391.0	NM_001276465	230895.0	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-116182938-2	chr4	116182838	116183038	+	545.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9566.0	NM_001099295	67323.0	Mm.45442	NM_001099295	ENSMUSG00000078593	1700042G07Rik	-	RIKEN cDNA 1700042G07 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-53266114-2	chr19	53266014	53266214	+	577.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10909.0	NR_036590	69319.0	Mm.57452	NR_036590		1700001K23Rik	-	RIKEN cDNA 1700001K23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-58669036-2	chr16	58668936	58669136	+	564.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur2|SINE|Alu	-1172.0	NM_007757	12892.0	Mm.291519	NM_007757	ENSMUSG00000022742	Cpox	CPX|Cpo|HCP|cac|nct	coproporphyrinogen oxidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-34189740-2	chr5	34189640	34189840	+	643.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2030.0	NM_010753	17122.0	Mm.259260	NM_010753	ENSMUSG00000037235	Mxd4	2810410A03Rik|Mad4|bHLHc12	Max dimerization protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3322745-1	chr19	3322645	3322845	+	850.0	f0_c57.idr	promoter-TSS (NM_013495)	promoter-TSS (NM_013495)	-556.0	NM_013495	12894.0	Mm.18522	NM_013495	ENSMUSG00000024900	Cpt1a	C730027G07|CPTI|Cpt1	carnitine palmitoyltransferase 1a, liver	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-73726649-2	chr15	73726549	73726749	+	707.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166388, intron 1 of 5)	intron (NM_001166388, intron 1 of 5)	1719.0	NM_001166388	19245.0	Mm.390807	NM_008975	ENSMUSG00000059895	Ptp4a3	AV088979|Prl-3|pPtp4a3	protein tyrosine phosphatase 4a3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-86572579-4	chr6	86572453	86572653	+	963.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	45152.0	NR_037961	72012.0	Mm.349174	NR_037960	ENSMUSG00000097048	1600020E01Rik	-	RIKEN cDNA 1600020E01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152021043-4	chr1	152020942	152021142	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197990, intron 1 of 5)	MTD|LTR|ERVL-MaLR	69278.0	NM_197990	69399.0	Mm.278031	NM_197990	ENSMUSG00000032666	1700025G04Rik	2610510E02Rik|2900042O04Rik	RIKEN cDNA 1700025G04 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-170322257-4	chr2	170322140	170322340	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34121.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-56469434-4	chr18	56469273	56469473	+	936.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026240, intron 1 of 13)	intron (NM_026240, intron 1 of 13)	37241.0	NM_026240	107022.0	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|Gramd2b|NS3TP2	GRAM domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-23812279-4	chr10	23812223	23812423	+	834.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183116, intron 6 of 13)	intron (NM_183116, intron 6 of 13)	15337.0	NM_001358812	76306.0	Mm.294271	NM_183116	ENSMUSG00000037455	Slc18b1	1110021L09Rik	solute carrier family 18, subfamily B, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-161027269-1	chr1	161027169	161027369	+	561.0	f1_balb.idr	intron (NM_001356489, intron 4 of 4)	(CAGG)n|Simple_repeat|Simple_repeat	7580.0	NM_001356489	240869.0	Mm.296127	NM_173424	ENSMUSG00000043467	Zbtb37	D430004I08Rik	zinc finger and BTB domain containing 37	protein-coding	0.958893924033743	1.55857982245796	2.39521524163141	1.63001085111024	0.96509406735102	1.57099705013978	2.84776700592943	1.92250818459178	0.685907964940101	0.560769699984444	0.960350977191929
Merged-chr4-141077871-4	chr4	141077777	141077977	+	926.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149724, intron 1 of 8)	CpG	480.0	NR_149724	66147.0	Mm.21187	NM_025383	ENSMUSG00000028923	Necap2	1110005F07Rik|AA409105|C78898|NECAP-2	NECAP endocytosis associated 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-35766501-2	chr16	35766401	35766601	+	621.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153550, intron 1 of 8)	RLTR30|LTR|ERV1	2855.0	NM_153550	224132.0	Mm.24094	NM_153550	ENSMUSG00000022848	Dirc2	RCC4	disrupted in renal carcinoma 2 (human)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-3008568-3	chr18	3008399	3008599	+	835.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	G-rich|Low_complexity|Low_complexity	114913.0	NM_001167539	100312476.0	Mm.480293	NM_001167539	ENSMUSG00000091539	Vmn1r238	-	vomeronasal 1 receptor, 238	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134932670-2	chr6	134932570	134932770	+	557.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_037956, intron 1 of 1)	intron (NR_037956, intron 1 of 1)	3578.0	NR_037955	381822.0	Mm.5935	NR_037955	ENSMUSG00000098318	Lockd	1190002F15Rik|AI120476|Droc	lncRNA downstream of Cdkn1b	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127066483-2	chr10	127066383	127066583	+	733.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_025982)	TTS (NM_025982)	2948.0	NM_001355005	12567.0	Mm.6839	NM_009870	ENSMUSG00000006728	Cdk4	Crk3	cyclin-dependent kinase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-57692119-3	chr15	57692018	57692218	+	906.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2549.0	NM_199449	387609.0	Mm.36557	NM_199449	ENSMUSG00000071757	Zhx2	Afr-1|Afr1|Raf|mKIAA0854	zinc fingers and homeoboxes 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-75193408-2	chr14	75193308	75193508	+	787.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008879, intron 2 of 16)	intron (NM_008879, intron 2 of 16)	-48879.0	NM_019775	56373.0	Mm.24242	NM_019775	ENSMUSG00000021999	Cpb2	1110032P04Rik|4930405E17Rik|AI255929|CPR|Cpu|TAFI	carboxypeptidase B2 (plasma)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-24618567-2	chr7	24618467	24618667	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001102613, intron 5 of 14)	B1_Mus1|SINE|Alu	7239.0	NM_001102613	232970.0	Mm.333663	NM_001102613	ENSMUSG00000074277	Phldb3	EG232970|Gm10102	pleckstrin homology like domain, family B, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-116980697-3	chr2	116980603	116980803	+	734.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	80551.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-57547444-4	chr16	57547308	57547508	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 4 of 4)	intron (NM_001040397, intron 4 of 4)	-1834.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-160613846-2	chr2	160613746	160613946	+	944.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32051.0	NM_009408	21969.0	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-179842769-4	chr1	179842657	179842857	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38742.0	NM_026375	226747.0	Mm.128165	NM_026375	ENSMUSG00000026491	Ahctf1	6230412P20Rik|AV011447|Elys	AT hook containing transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-102258331-4	chr7	102258249	102258449	+	879.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8231.0	NM_019566	56212.0	Mm.259795	NM_019566	ENSMUSG00000073982	Rhog	2810426G09Rik|Arhg|Sid10750	ras homolog family member G	protein-coding	-0.0271041751126818	-0.366439859290183	-0.2431719115334	-0.557168304734683	-0.560752185055263	-0.550557424714469	-0.553891494263862	-0.556723993083651	-3.29067813825733	0.206749705584881	1
Merged-chr11-120055408-1	chr11	120055308	120055508	+	652.0	f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-8263.0	NM_007377	11302.0	Mm.6826	NM_007377	ENSMUSG00000025375	Aatk	AATYK|aatyk1|mKIAA0641	apoptosis-associated tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70007086-2	chr11	70006986	70007186	+	743.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007888, intron 9 of 14)	intron (NM_007888, intron 9 of 14)	-4957.0	NR_029758	723896.0		NR_029758	ENSMUSG00000065534	Mir324	Mirn324|mir-324|mmu-mir-324	microRNA 324	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-62048857-2	chr18	62048757	62048957	+	945.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	95782.0	NM_172628	225608.0	Mm.262320	NM_172628	ENSMUSG00000045629	Sh3tc2	D430044G18Rik	SH3 domain and tetratricopeptide repeats 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-11454579-2	chr8	11454479	11454679	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011227, intron 1 of 1)	intron (NM_011227, intron 1 of 1)	-23350.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141623948-4	chr4	141623831	141624031	+	979.341675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001013780)	promoter-TSS (NM_001013780)	-97.0	NM_001013780	384071.0	Mm.295682	NM_001013780	ENSMUSG00000040740	Slc25a34	Gm1369	solute carrier family 25, member 34	protein-coding	4.7891182774561	5.04673575644093	2.78313578012797	5.008219416723	3.54976309714385	2.07245749784771	2.2331157846031	3.21667210018014	-2.37297032389186	0.000160565943428235	0.00454370958946225
Merged-chr7-141531189-2	chr7	141531089	141531289	+	606.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_026522, intron 2 of 10)	MTC|LTR|ERVL-MaLR	8668.0	NM_026522	68038.0	Mm.245355	NM_026522	ENSMUSG00000025512	Chid1	3110023E09Rik|AI841869	chitinase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-14643246-4	chr8	14643133	14643333	+	983.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172910, intron 4 of 15)	MTE2a|LTR|ERVL-MaLR	-245303.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	2.4862364430995	1.56375130838106	1.25434396672432	2.702132193543	2.50773012751828	2.2966605590285	1.26188046702041	2.71647526877645	0.335214114824098	0.749961885524355	0.998431161219273
Merged-chr2-30980858-2	chr2	30980758	30980958	+	599.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_144885, intron 2 of 8)	B1_Mur4|SINE|Alu	1083.0	NM_144885	227707.0	Mm.235238	NM_144885	ENSMUSG00000026851	BC005624	-	cDNA sequence BC005624	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106658571-1	chr11	106658471	106658671	+	724.5	f0_balb.idr	intron (NM_001032378, intron 13 of 13)	intron (NM_001032378, intron 13 of 13)	-45641.0	NM_198292	21763.0	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3677376-4	chr4	3677310	3677510	+	905.5166630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010747)	promoter-TSS (NM_010747)	-711.0	NM_001111096	17096.0	Mm.317331	NM_010747	ENSMUSG00000042228	Lyn	AA407514|Hck-2|p53Lyn|p56Lyn	LYN proto-oncogene, Src family tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-99097574-3	chr10	99097453	99097653	+	868.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9529.0	NM_027740	382406.0	Mm.440656	NM_027740	ENSMUSG00000019952	Poc1b	4933430F16Rik|Wdr51b	POC1 centriolar protein B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141735103-4	chr4	141735003	141735203	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11572.0	NM_001081408	75986.0	Mm.30032	NM_001081408	ENSMUSG00000040706	Agmat	5033405N08Rik	agmatine ureohydrolase (agmatinase)	protein-coding	3.78812828641786	3.71986411932718	3.90161785861003	4.28840863541917	3.81838233685194	4.19091891354572	3.21694839933786	4.00178534959401	-0.131222946551471	0.783487340073336	0.998431161219273
Merged-chr15-83086100-4	chr15	83085993	83086193	+	886.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14112.0	NM_023475	68607.0	Mm.30056	NM_023475	ENSMUSG00000058586	Serhl	0610008B10Rik|1110019M09Rik|AU019786	serine hydrolase-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-4170405-4	chr18	4170309	4170509	+	885.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026092, intron 3 of 4)	intron (NM_026092, intron 3 of 4)	4577.0	NM_026092	67328.0	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-114882620-1	chr5	114882520	114882720	+	591.0	f1_c57bl6.idr	intron (NM_026263, intron 11 of 11)	intron (NM_026263, intron 11 of 11)	-14314.0	NM_011854	23962.0	Mm.228363	NM_011854	ENSMUSG00000029561	Oasl2	M1204|Mmu-OASL|Oasl	2'-5' oligoadenylate synthetase-like 2	protein-coding	-0.120480119434764	0.0996305503026166	-0.353308442478151	-0.207856984728766	-0.228473211580017	-0.349135185863771	-0.352560095669289	-0.205313178785733	-1.62807353241239	0.472785554781131	1
Merged-chr7-19700546-2	chr7	19700446	19700646	+	875.125	f1_balb.idr|f1_c57bl6.idr	TTS (NM_016871)	TTS (NM_016871)	-1358.0	NM_009696	11816.0	Mm.305152	NM_009696	ENSMUSG00000002985	Apoe	AI255918|Apo-E	apolipoprotein E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-10172493-4	chr8	10172370	10172570	+	940.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001319151, intron 1 of 34)	intron (NM_001319151, intron 1 of 34)	18559.0	NM_001319151	244281.0	Mm.422761	NM_001081397	ENSMUSG00000039057	Myo16	BM140241|C230040D10Rik|Gm1105|NYAP3|mKIAA0865	myosin XVI	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-87444347-2	chr11	87444247	87444447	+	663.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199293, intron 2 of 30)	B1_Mm|SINE|Alu	16756.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-67935589-3	chr14	67935469	67935669	+	858.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1997.0	NM_177780	68813.0	Mm.258155	NM_177780	ENSMUSG00000044447	Dock5	1110060D06Rik|AI666732|AI956923|BC016533|E130320D18|lr2|rlc	dedicator of cytokinesis 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-49830885-2	chr18	49830785	49830985	+	556.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-2112.0	NM_001081371	240283.0	Mm.257790	NM_001081371	ENSMUSG00000037416	Dmxl1	C630007L23Rik|D030030C22	Dmx-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-58727926-4	chr16	58727817	58728017	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_171826)	promoter-TSS (NM_171826)	7.0	NM_001252451	224250.0	Mm.29482	NM_171826	ENSMUSG00000022744	Cldnd1	1110019C08Rik|AA407103|AI849195|AW489850|Cldn25	claudin domain containing 1	protein-coding	5.40906029194982	5.38357105429633	5.66286062847737	5.3437694481292	5.491185093842	5.45240530752454	5.77235101625891	5.65013851830363	0.162393301696296	0.536391420516547	0.953323426463389
Merged-chr17-14206227-2	chr17	14206127	14206327	+	844.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2396.0	NM_172826	240025.0	Mm.79993	NM_172826	ENSMUSG00000048826	Dact2	2900084M21Rik|A630024E20|Dpr2|Frd2|dapper2	dishevelled-binding antagonist of beta-catenin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-98113901-4	chr6	98113806	98114006	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	122123.0	NM_008601	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35213995-2	chr17	35213895	35214095	+	667.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-8644.0	NM_010735	16992.0	Mm.87787	NM_010735	ENSMUSG00000024402	Lta	LT|LT-[a]|LT-alpha|LT[a]|LTalpha|Ltx|TNF-beta|TNFSF1|Tnfb|Tnfsf1b|Tnlg1e|hlb382	lymphotoxin A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83078227-4	chr11	83078143	83078343	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13131.0	NM_011408	20556.0	Mm.278689	NM_011408	ENSMUSG00000072620	Slfn2	Shlf2	schlafen 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-34280779-4	chr10	34280693	34280893	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1397.0	NM_009433	22110.0	Mm.20445	NM_009433	ENSMUSG00000047514	Tspyl1	Tspyl	testis-specific protein, Y-encoded-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-62327184-2	chr10	62327084	62327284	+	849.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010438, intron 4 of 21)	intron (NM_010438, intron 4 of 21)	13237.0	NM_001146100	15275.0	Mm.196605	NM_010438	ENSMUSG00000037012	Hk1	BB404130|Hk-1|Hk1-s|dea|mHk1-s	hexokinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78614973-1	chr15	78614873	78615073	+	804.0	f1_balb.idr	intron (NM_028195, intron 8 of 12)	intron (NM_028195, intron 8 of 12)	17926.0	NM_028195	72318.0	Mm.32911	NM_028195	ENSMUSG00000018008	Cyth4	2510004M07Rik|5830469K17Rik|AI467541|Pscd4|mFLJ00017	cytohesin 4	protein-coding	2.51768931397944	2.40190202307951	2.19909537141269	2.37316858962187	2.05769501483855	2.28590186608793	2.45657344309121	2.2747231580752	-0.253598270527976	0.752786449704406	0.998431161219273
Merged-chr11-107339581-4	chr11	107339504	107339704	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 1 of 9)	intron (NR_153311, intron 1 of 9)	131116.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117969236-4	chr11	117969126	117969326	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_007707, exon 1 of 2)	5' UTR (NM_007707, exon 1 of 2)	140.0	NM_007707	12702.0	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-55870153-4	chr12	55870051	55870251	+	824.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001037756)	TTS (NM_001037756)	33785.0	NR_155205	52592.0	Mm.24761	NM_027867	ENSMUSG00000012076	Brms1l	0710008O11Rik|AI159718|BRMS1|D12Ertd407e	breast cancer metastasis-suppressor 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-32073531-3	chr17	32073417	32073617	+	812.111145	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17906.0	NR_027316	435518.0	Mm.328944	NR_027316	ENSMUSG00000002791	Pdxk-ps	Gm9743	pyridoxal (pyridoxine, vitamin B6) kinase, pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-12443326-1	chr19	12443226	12443426	+	767.0	f1_c57bl6.idr	Intergenic	Intergenic	15421.0	NM_019540	56093.0	Mm.285849	NM_019540	ENSMUSG00000040065	Pfpl	Epcs5|Epcs50	pore forming protein-like	protein-coding	0.664034215575296	-0.011516060496413	-0.0164756130553331	0.137999005517985	0.236387765529478	-0.0103965839169963	-0.0153826836921331	0.395954416937328	-0.520923610624232	0.807169740216364	1
Merged-chr3-69182572-4	chr3	69182483	69182683	+	925.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39836.0	NM_027843	71619.0	Mm.98122	NM_027843	ENSMUSG00000098207	Arl14	9130014L17Rik|Arf7	ADP-ribosylation factor-like 14	protein-coding	3.7581040072488	3.65754341767677	3.32657793542967	3.89263894065617	4.47375675339939	3.7783261800726	4.15755487858374	4.80599405635484	0.942759272069203	0.0409774802408617	0.288864752015193
Merged-chr6-22351445-2	chr6	22351345	22351545	+	710.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_138587, intron 1 of 9)	intron (NM_138587, intron 1 of 9)	4636.0	NM_138587	27999.0	Mm.490307	NM_138587	ENSMUSG00000029672	Fam3c	D6Wsu176e|Ilei	family with sequence similarity 3, member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-27614558-2	chr15	27614458	27614658	+	598.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013792, intron 4 of 6)	intron (NM_001013792, intron 4 of 6)	16135.0	NM_001013792	432940.0	Mm.309164	NM_001013792	ENSMUSG00000046034	Otulin	C79097|Fam105b|m3Sapc|m7-1Sapc	OTU deubiquitinase with linear linkage specificity	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-37537506-3	chr13	37537413	37537613	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	192168.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	4.95016048975612	5.04610632164054	5.63271389800305	4.80489474771222	1.4170978976093	1.72214940374443	2.42687265662871	3.21822797405277	-3.95055856687338	2.70232774193676e-05	0.00104588800799217
Merged-chr19-16033491-2	chr19	16033389	16033589	+	846.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	48414.0	NR_045355	100502653.0	Mm.149980	NR_045355	ENSMUSG00000097557	C130060C02Rik	-	RIKEN cDNA C130060C02 gene	ncRNA	1.89412300609169	2.25035816584435	2.04801084477698	2.32381244734236	2.66121382467516	1.33784611582496	2.19188027605248	1.86254728167898	-0.0398379175627215	0.966755854453796	0.998431161219273
Merged-chr11-8614962-2	chr11	8614911	8615111	+	837.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 2 of 30)	Lx5|LINE|L1	49524.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	-1.35914981169748	-1.4788811654986	-1.48870847347744	-1.49678091685108	-1.5090967730776	-1.16749470945895	-1.48648378635949	-1.49533595334674	0.921594974740572	0.790977103014573	1
Merged-chr12-3671520-2	chr12	3671420	3671620	+	887.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162465, intron 8 of 17)	intron (NM_001162465, intron 8 of 17)	98536.0	NM_007886	13528.0	Mm.286202	NM_007886	ENSMUSG00000071454	Dtnb	-	dystrobrevin, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-121376062-4	chr10	121375950	121376150	+	976.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029364, intron 3 of 13)	intron (NM_029364, intron 3 of 13)	10960.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-53805966-4	chr11	53805872	53806072	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033332, intron 3 of 3)	intron (NR_033332, intron 3 of 3)	35499.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-7088911-4	chr1	7088828	7089028	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183028)	promoter-TSS (NM_183028)	8.0	NM_183028	319263.0	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33966356-3	chr16	33966278	33966478	+	765.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009471, intron 1 of 5)	intron (NM_009471, intron 1 of 5)	660.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-86439974-2	chr1	86439874	86440074	+	849.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13645.0	NM_027966	71863.0	Mm.179627	NM_027966	ENSMUSG00000036574	Tex44	1700019O17Rik	testis expressed 44	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-24952838-2	chr7	24952738	24952938	+	599.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17237.0	NR_106013	102465633.0		NR_106013	ENSMUSG00000098802	Mir7046	Gm27469|mmu-mir-7046	microRNA 7046	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114915720-2	chr11	114915620	114915820	+	913.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18666.0	NM_001347651	217304.0	Mm.185355	NM_199221	ENSMUSG00000063193	Cd300lb	CLM-7|Clm7|Gm253|LMIR5	CD300 molecule like family member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-58802522-4	chr1	58802413	58802613	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080126)	promoter-TSS (NM_001080126)	11.0	NM_001277926	12370.0	Mm.336851	NM_009812	ENSMUSG00000026029	Casp8	CASP-8|FLICE|MACH|Mch5	caspase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-37460268-2	chr8	37460168	37460368	+	776.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-436030.0	NR_126063	414128.0	Mm.450976	NR_126063	ENSMUSG00000110242	G630064G18Rik	-	RIKEN cDNA G630064G18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-28262733-2	chr3	28262633	28262833	+	731.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163007)	promoter-TSS (NM_001163007)	-481.0	NM_001163007	665113.0	Mm.126193	NM_026910	ENSMUSG00000027692	Tnik	1500031A17Rik|4831440I19Rik|AI451411|C530008O15Rik|C630040K21Rik	TRAF2 and NCK interacting kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-24469699-4	chr1	24469559	24469759	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007733, intron 11 of 50)	intron (NM_007733, intron 11 of 50)	117778.0	NM_007733	12823.0	Mm.329196	NM_007733	ENSMUSG00000026141	Col19a1	-	collagen, type XIX, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19030323-2	chr7	19030223	19030423	+	586.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360713, intron 3 of 22)	RSINE1|SINE|B4	5946.0	NM_026605	68188.0	Mm.130902	NM_026605	ENSMUSG00000023118	Sympk	1500016F02Rik|4632415H16Rik|AA125406|AI449890|SPK|SYM	symplekin	protein-coding	-0.608838599738921	-0.125396530632923	-0.746390861718736	-0.748924450191936	-0.752500562975302	-0.542910107635549	-0.745666146677288	-0.748482012025625	-2.16119744966682	0.429103753430865	1
Merged-chr12-34712680-3	chr12	34712599	34712799	+	739.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271386, intron 3 of 27)	MIR|SINE|MIR	-183810.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	3.24201615642429	2.73047524564994	2.25452672368779	1.37943211097523	2.93067533217671	2.95645549620246	2.27282202469192	1.86164232337719	0.00348003539345377	0.996880407180203	0.999268611847349
Merged-chr10-43752215-4	chr10	43752122	43752322	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040581, intron 1 of 3)	intron (NR_040581, intron 1 of 3)	6064.0	NR_040581	69443.0	Mm.484042	NR_040581	ENSMUSG00000111422	1700027J07Rik	-	RIKEN cDNA 1700027J07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-29032588-4	chr17	29032504	29032704	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013663)	promoter-TSS (NM_013663)	-56.0	NM_013663	20383.0	Mm.6787	NM_013663	ENSMUSG00000071172	Srsf3	AL024116|Sfrs3|X16	serine/arginine-rich splicing factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-139065107-2	chr3	139065007	139065207	+	609.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356388, intron 1 of 13)	intron (NM_001356388, intron 1 of 13)	10094.0	NM_145544	229877.0	Mm.28893	NM_145544	ENSMUSG00000028149	Rap1gds1	BC011279|GDS1	RAP1, GTP-GDP dissociation stimulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-120972030-4	chr6	120971849	120972049	+	976.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001270475, intron 21 of 31)	intron (NM_001270475, intron 21 of 31)	13105.0	NR_138099	215458.0	Mm.122399	NR_138099		LOC215458	-	uncharacterized LOC215458	ncRNA	-2.18138529563533	-2.15523716995652	-2.1631445789866	-2.16963996020037	-2.05513010215571	-2.15352360143315	-2.16135451490766	-2.16847729006863	0.759018020146679	0.829933115115583	1
Merged-chr19-12025517-2	chr19	12025417	12025617	+	714.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	11223.0	NM_146680	258675.0	Mm.271517	NM_146680	ENSMUSG00000067529	Olfr1423	MOR239-3	olfactory receptor 1423	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-62985455-4	chr18	62985377	62985577	+	963.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028017, intron 5 of 11)	intron (NM_028017, intron 5 of 11)	7561.0	NM_028017	108123.0	Mm.292687	NM_028017	ENSMUSG00000024581	Napg	2400003O04Rik|SNARE	N-ethylmaleimide sensitive fusion protein attachment protein gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-113777060-4	chr5	113776983	113777183	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025526, intron 4 of 4)	intron (NM_025526, intron 4 of 4)	4271.0	NM_025526	66383.0	Mm.29497	NM_025526	ENSMUSG00000025825	Iscu	2310020H20Rik|AA407971|Nifu|Nifun	iron-sulfur cluster assembly enzyme	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-56653309-4	chr6	56653228	56653428	+	882.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51371.0	NM_025520	66373.0	Mm.25642	NM_025520	ENSMUSG00000091625	Lsm5	2010208O10Rik|2310034K10Rik	LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-79626887-4	chr12	79626783	79626983	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	297850.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-73314076-4	chr8	73313964	73314164	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010687, intron 1 of 14)	intron (NM_010687, intron 1 of 14)	39476.0	NM_001317391	16795.0	Mm.324371	NM_010687	ENSMUSG00000004383	Large1	BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd	LARGE xylosyl- and glucuronyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-105033358-4	chr12	105033238	105033438	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028419, intron 1 of 1)	intron (NM_028419, intron 1 of 1)	720.0	NM_028419	73046.0	Mm.29128	NM_028419	ENSMUSG00000021102	Glrx5	-	glutaredoxin 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27400238-2	chr2	27400138	27400338	+	702.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_009500, intron 1 of 27)	intron (NM_009500, intron 1 of 27)	27370.0	NR_133905	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114765350-4	chr11	114765237	114765437	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001102615)	promoter-TSS (NM_001102615)	-52.0	NM_001102615	286942.0	Mm.308713	NM_001102615	ENSMUSG00000010021	Kif19a	Kif19	kinesin family member 19A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165990698-3	chr2	165990579	165990779	+	697.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1958.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-8584530-2	chr11	8584430	8584630	+	582.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 3 of 30)	intron (NM_001083587, intron 3 of 30)	80005.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27768557-5	chr2	27768466	27768666	+	945.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57983.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-43872050-4	chr5	43871954	43872154	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007646, intron 1 of 7)	ORR1B2|LTR|ERVL-MaLR	3245.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	5.49486078066843	6.07485416947307	5.52981486814456	5.22163446817338	4.89062145760164	5.83277451204759	5.38960382756342	5.60114393440111	-0.168518849244534	0.578354535008943	0.965985075107763
Merged-chr16-44199214-4	chr16	44199108	44199308	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029889, intron 3 of 7)	intron (NM_001029889, intron 3 of 7)	25811.0	NM_001029889	207806.0	Mm.310566	NM_001029889	ENSMUSG00000068284	Usf3	5530400K22Rik|Gm1779|Gm608|mKIAA2018	upstream transcription factor family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64232803-2	chr5	64232703	64232903	+	890.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 1 of 18)	intron (NM_001289514, intron 1 of 18)	2446.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27539772-3	chr2	27539618	27539818	+	801.200012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F3|LINE|L1	24571.0	NM_080848	140858.0	Mm.28265	NM_080848	ENSMUSG00000026917	Wdr5	2410008O07Rik|AA408785|AA960360|Big|Big-3	WD repeat domain 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117368810-2	chr8	117368710	117368910	+	724.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028941, intron 1 of 20)	intron (NM_028941, intron 1 of 20)	19640.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91052154-3	chr2	91052057	91052257	+	983.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MYSERV6-int|LTR|ERVK	-1859.0	NM_008948	19182.0	Mm.289832	NM_008948	ENSMUSG00000002102	Psmc3	TBP-1	proteasome (prosome, macropain) 26S subunit, ATPase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-58248976-4	chr9	58248890	58249090	+	930.474976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008884, intron 1 of 7)	intron (NM_008884, intron 1 of 7)	796.0	NM_008884	18854.0	Mm.392123	NM_008884	ENSMUSG00000036986	Pml	1200009E24Rik|AI661194|Trim19	promyelocytic leukemia	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-10689077-2	chr10	10688977	10689177	+	716.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_016976, exon 9 of 9)	exon (NM_016976, exon 9 of 9)	-61969.0	NR_046010	78056.0	Mm.271285	NR_046010	ENSMUSG00000112730	4930567K20Rik	1700038H22Rik	RIKEN cDNA 4930567K20 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-111097306-2	chr11	111097206	111097406	+	902.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31142.0	NM_008425	16518.0	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding	1.21856700648463	1.67261580256982	1.86554809147578	1.70022171960483	1.99318556918983	1.10023719689259	1.76303150385019	1.70889354940426	0.174437381037201	0.876907330494703	0.998431161219273
Merged-chr8-83986974-1	chr8	83986874	83987074	+	608.0	f1_balb.idr	intron (NM_008854, intron 4 of 9)	intron (NM_008854, intron 4 of 9)	10091.0	NM_001277898	18747.0	Mm.19111	NM_008854	ENSMUSG00000005469	Prkaca	PKCD|Pkaca	protein kinase, cAMP dependent, catalytic, alpha	protein-coding	-0.808804940584917	-0.799786701961649	-0.802751219047927	-0.805031857927833	-0.337841218662525	-0.797497648427291	-0.8020981923316	-0.382832650910795	3.09927553827885	0.29646665505041	1
Merged-chr11-101959993-4	chr11	101959904	101960104	+	938.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045806, exon 4 of 4)	non-coding (NR_045806, exon 4 of 4)	7011.0	NM_024449	74499.0	Mm.265602	NM_024449	ENSMUSG00000001494	Sost	5430411E23Rik	sclerostin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-83407972-3	chr4	83407831	83408031	+	865.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTRIS4|LTR|ERV1	-9793.0	NR_152449	77634.0	Mm.271985	NM_029949	ENSMUSG00000028483	Snapc3	1810020H02Rik|4930558A07Rik|5031401C21Rik|AI414457|E030018J20Rik	small nuclear RNA activating complex, polypeptide 3	protein-coding	-1.52696403314699	-1.49523967873556	-1.5048333853602	-1.51271394162622	-1.52473704212565	-1.49316068248889	-1.50266158046844	-1.06847079017215	2.01069003169785	0.564432837776867	1
Merged-chr8-71673219-2	chr8	71673129	71673329	+	654.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1472.0	NM_001029873	382018.0	Mm.334606	NM_001029873	ENSMUSG00000034799	Unc13a	2410078G03Rik|Munc13-1	unc-13 homolog A (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120574370-2	chr11	120574270	120574470	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-1117.0	NM_011032	18453.0	Mm.16660	NM_011032	ENSMUSG00000025130	P4hb	ERp59|PDI|Pdia1|Thbp	prolyl 4-hydroxylase, beta polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-97196351-2	chr13	97196251	97196451	+	820.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010422, intron 1 of 13)	intron (NM_010422, intron 1 of 13)	2006.0	NM_010422	15212.0	Mm.27816	NM_010422	ENSMUSG00000021665	Hexb	-	hexosaminidase B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-148741853-3	chr5	148741722	148741922	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028285)	promoter-TSS (NR_028285)	-18.0	NR_028285	70138.0	Mm.417834	NR_028285	ENSMUSG00000086494	2210417A02Rik	AV081004	RIKEN cDNA 2210417A02 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-173760785-2	chr2	173760685	173760885	+	779.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_019806, intron 1 of 5)	intron (NM_019806, intron 1 of 5)	23214.0	NM_019806	56491.0	Mm.260456	NM_019806	ENSMUSG00000054455	Vapb	AI225786|AI840687|AI848259|D2Abb2e|R75548|VAP33b|Vamp33b	vesicle-associated membrane protein, associated protein B and C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129298501-4	chr2	129298489	129298689	+	703.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040371, intron 1 of 4)	RMER15|LTR|ERVL	1219.0	NR_040371	100503468.0	Mm.446943	NR_040371	ENSMUSG00000085498	Gm14023	-	predicted gene 14023	ncRNA	2.68984620322665	2.52933080514254	3.2671216400994	2.91635101945455	2.7132441948544	1.35365474008361	1.31219431304404	1.54421497709163	-2.05192914864283	0.0299819338160565	0.236971832625195
Merged-chr4-133670430-1	chr4	133670330	133670530	+	661.0	f1_balb.idr	intron (NM_001356466, intron 1 of 3)	intron (NM_001356466, intron 1 of 3)	2217.0	NM_001145955	230801.0	Mm.217004	NM_178698	ENSMUSG00000043257	Pigv	B330013B03|D430024F16Rik	phosphatidylinositol glycan anchor biosynthesis, class V	protein-coding	0.703792380231824	1.29009268741428	0.728983185754442	0.907246571548375	1.14375262978216	1.65751172949882	1.10610690037224	1.43536676283491	1.96625764142222	0.166340930922995	0.631835739514806
Merged-chr2-165287787-4	chr2	165287666	165287866	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252574)	promoter-TSS (NM_001252574)	21.0	NM_001252574	228875.0	Mm.21184	NM_144893	ENSMUSG00000017664	Slc35c2	C85957|CGI-15|D2Wsu58e|Ovcov1	solute carrier family 35, member C2	protein-coding	3.59769613665855	3.02390402273983	4.5725545453313	4.09089144210899	3.92330093380746	3.19183375369361	4.28489927670281	4.11062814111872	-0.00675805144263608	0.989721590970174	0.998431161219273
Merged-chr4-132345729-4	chr4	132345657	132345857	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001197082)	promoter-TSS (NM_001197082)	-7.0	NM_133878	100088.0	Mm.255045	NM_133878	ENSMUSG00000028896	Rcc1	4931417M11Rik|AI326872|Chc1	regulator of chromosome condensation 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4537623-2	chr16	4537523	4537723	+	563.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14548.0	NM_001361474	106393.0	Mm.35811	NM_175347	ENSMUSG00000022519	Srl	9830004M20Rik|AW108387|sar	sarcalumenin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115160198-3	chr11	115160113	115160313	+	900.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021411, intron 6 of 8)	intron (NM_021411, intron 6 of 8)	-3128.0	NM_012030	26941.0	Mm.27842	NM_012030	ENSMUSG00000020733	Slc9a3r1	EBP-50|NHE-RF|NHERF-1|NHERF1	solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 1	protein-coding	3.22665115456492	2.80093180763357	3.95784887254295	3.16123305198278	2.74283082267409	2.82196120638936	3.08532880576612	3.26074406825989	-0.620639384204633	0.319626047545127	0.821951596143819
Merged-chr8-34908738-3	chr8	34908682	34908882	+	924.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175091, intron 3 of 26)	intron (NM_175091, intron 3 of 26)	56908.0	NM_175091	21951.0	Mm.88364	NM_175091	ENSMUSG00000031529	Tnks	4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	protein-coding	1.02917801529292	0.903372111633829	1.74982060922535	1.48945708866407	1.03533713229307	1.60739951867755	1.42052209512406	1.49766280336449	0.218933888639412	0.862137971598176	0.998431161219273
Merged-chr14-31390009-4	chr14	31389926	31390126	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347585, intron 2 of 7)	intron (NM_001347585, intron 2 of 7)	27651.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-93793959-2	chr16	93793859	93794059	+	587.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_151466, intron 1 of 1)	B1_Mus1|SINE|Alu	942.0	NR_151466	102633000.0	Mm.443436	NR_151466		2310043M15Rik	-	RIKEN cDNA 2310043M15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-79018533-1	chr12	79018433	79018633	+	725.0	f1_balb.idr	Intergenic	Intergenic	-10630.0	NM_181073	211945.0	Mm.478321	NM_181073	ENSMUSG00000060716	Plekhh1	AV308913|C77772|D630024D12Rik|mKIAA1200	pleckstrin homology domain containing, family H (with MyTH4 domain) member 1	protein-coding	0.553385011702697	1.32833456121423	0.406075931651592	0.398327082854369	1.03970259398326	0.418219494704192	0.408276114378396	1.21744390193593	0.366824539978047	0.837638503658429	1
Merged-chr2-90477762-2	chr2	90477662	90477862	+	688.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	1412.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	-0.529827800329364	-0.442823404623712	-0.755444617770777	-0.49281910032044	-0.759751095896451	-0.752560912612138	-0.754928464324927	-0.756927639561696	-2.97740279600092	0.279232532091099	1
Merged-chr6-120627241-1	chr6	120627141	120627341	+	588.0	f1_balb.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-39180.0	NM_001128151	330409.0	Mm.333357	NM_001128151	ENSMUSG00000071226	Cecr2	2610101O16Rik|2810409N01Rik|Gtl4|mKIAA1740	CECR2, histone acetyl-lysine reader	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-108934320-4	chr7	108934225	108934425	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025344)	promoter-TSS (NM_025344)	-90.0	NM_025344	66085.0	Mm.182962	NM_025344	ENSMUSG00000031029	Eif3f	0610037M02Rik|AA409853|Eif3s5	eukaryotic translation initiation factor 3, subunit F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-13594000-2	chr8	13593900	13594100	+	727.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 7 of 23)	intron (NM_009025, intron 7 of 23)	-31539.0	NM_001080781	66501.0	Mm.46136	NM_025601	ENSMUSG00000031452	1700029H14Rik	-	RIKEN cDNA 1700029H14 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-45392674-3	chr13	45392592	45392792	+	910.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153789, intron 2 of 6)	RSINE1|SINE|B4	2950.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-102190168-3	chr11	102190081	102190281	+	876.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175935, intron 1 of 5)	intron (NM_175935, intron 1 of 5)	482.0	NM_175935	68401.0	Mm.22385	NM_175935	ENSMUSG00000034793	G6pc3	0710001K01Rik|AU019276|AU045429|AV128920|AW545836|UGRP	glucose 6 phosphatase, catalytic, 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-22062141-1	chr3	22062041	22062241	+	553.0	f0_c57.idr	Intergenic	Intergenic	-14511.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-22592829-2	chr8	22592729	22592929	+	631.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011696, intron 1 of 8)	intron (NM_011696, intron 1 of 8)	984.0	NM_001198998	22335.0	Mm.227704	NM_011696	ENSMUSG00000008892	Vdac3	-	voltage-dependent anion channel 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-21716786-4	chr16	21716689	21716889	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16_Mm|LTR|ERVK	-22124.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-66041495-4	chr5	66041401	66041601	+	957.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139065, intron 3 of 6)	Lx9|LINE|L1	-37216.0	NR_027961	231253.0	Mm.436542	NM_177679	ENSMUSG00000054598	9130230L23Rik	-	RIKEN cDNA 9130230L23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-34753458-3	chr19	34753351	34753551	+	725.133362	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6340.0	NM_172838	240638.0	Mm.74636	NM_172838	ENSMUSG00000009378	Slc16a12	3230401A21|AW210596	solute carrier family 16 (monocarboxylic acid transporters), member 12	protein-coding	1.9054537225367	2.37400887562176	0.925634833538045	0.904966828815417	1.10291402708894	2.47986040326749	0.931415487817437	1.93288000428909	0.209164889911118	0.873061840728477	0.998431161219273
Merged-chr1-36591586-4	chr1	36591489	36591689	+	853.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001126046, intron 10 of 14)	intron (NM_001126046, intron 10 of 14)	1743.0	NM_027957	381337.0	Mm.17413	NM_027957	ENSMUSG00000046337	Fam178b	1700024G10Rik|Gm990	family with sequence similarity 178, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-36143096-2	chr17	36142996	36143196	+	762.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1922.0	NR_033517	675325.0	Mm.75890	NR_033517	ENSMUSG00000038311	2410017I17Rik	-	RIKEN cDNA 2410017I17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75089203-2	chr11	75089103	75089303	+	916.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001002764, intron 13 of 18)	L1MB8|LINE|L1	-23212.0	NR_030454	735274.0		NR_030454	ENSMUSG00000106252	Mir684-1	Mirn684-1	microRNA 684-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-126940682-4	chr6	126940581	126940781	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138594, intron 1 of 13)	Lx8|LINE|L1	715.0	NM_138594	28040.0	Mm.44228	NM_138594	ENSMUSG00000030347	D6Wsu163e	C12orf4	DNA segment, Chr 6, Wayne State University 163, expressed	protein-coding	3.86998939408856	4.46561985090485	4.0622580591325	5.36326322540627	4.68674387161409	4.94726785955122	4.16405957761967	4.89594379800554	0.161902831090929	0.70758949841756	0.998431161219273
Merged-chr6-100667010-1	chr6	100666910	100667110	+	832.0	f0_balb.idr	intron (NM_181590, intron 2 of 10)	intron (NM_181590, intron 2 of 10)	4147.0	NM_181590	72171.0	Mm.256022	NM_181590	ENSMUSG00000035378	Shq1	2810403P18Rik|Grim-1	SHQ1 homolog (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-21711058-4	chr13	21710965	21711165	+	952.2291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	tRNA-Met-i|tRNA|tRNA	5078.0	NM_178199	319185.0		NM_178199	ENSMUSG00000094338	Hist1h2bl	H2b-291a	histone cluster 1, H2bl	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-79760254-4	chr1	79760128	79760328	+	931.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027057, intron 1 of 4)	intron (NM_027057, intron 1 of 4)	1541.0	NM_001111279	69368.0	Mm.293273	NM_027057	ENSMUSG00000073643	Wdfy1	1700013B03Rik|1700120F24Rik|FENS-1|Jr1|WDF1|ZFYVE17|mKIAA1435	WD repeat and FYVE domain containing 1	protein-coding	4.05712760072185	4.69793952913585	4.22113215219473	3.6563089747933	4.08906397619624	4.0013466995531	4.40747430286915	2.06584885469102	-0.436450988282983	0.438177726441641	0.908612234382228
Merged-chr16-90349857-4	chr16	90349761	90349961	+	991.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPEY4_LTR|LTR|ERVK	-36536.0	NM_015755	26559.0	Mm.125874	NM_015755	ENSMUSG00000053414	Hunk	Bstk1|Mak-v	hormonally upregulated Neu-associated kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88530698-2	chr3	88530598	88530798	+	827.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1697.0	NM_001029890	72640.0	Mm.275154	NM_001029890	ENSMUSG00000074480	Mex3a	2700083E18Rik|Gm411|Rkhd4	mex3 RNA binding family member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-9717560-2	chr3	9717460	9717660	+	605.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_053182, intron 2 of 7)	intron (NM_053182, intron 2 of 7)	-107475.0	NM_133218	170753.0	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-23891849-2	chr18	23891749	23891949	+	688.25	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001162942, exon 8 of 8)	3' UTR (NM_001162942, exon 8 of 8)	-62839.0	NM_027007	69256.0	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-41565617-4	chr3	41565516	41565716	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001130186, intron 1 of 10)	CpG	736.0	NM_001130186	269424.0	Mm.286285	NM_172303	ENSMUSG00000025764	Jade1	AU041499|D530048A03Rik|Phf17|mKIAA1807	jade family PHD finger 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-91581898-4	chr12	91581799	91581999	+	958.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175335, intron 2 of 8)	intron (NM_175335, intron 2 of 8)	7750.0	NM_031391	83602.0	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-95716298-2	chr8	95716198	95716398	+	607.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001035123, intron 1 of 6)	CpG	385.0	NM_001035123	66083.0	Mm.261321	NM_001035123	ENSMUSG00000031671	Setd6	0610039J04Rik|3110004G14Rik|AI413388|C76402	SET domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-17712101-4	chr12	17712002	17712202	+	880.3250119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016677, intron 1 of 3)	intron (NM_016677, intron 1 of 3)	21293.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	4.70752482184091	4.30845023497701	3.8836991128888	3.89985952521261	2.96416467717267	3.35370927072303	3.11899761423355	2.4185222053232	-1.84628024112047	0.000548066780103415	0.0120434161679135
Merged-chr16-92430124-2	chr16	92430024	92430224	+	586.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081549, intron 1 of 3)	intron (NM_001081549, intron 1 of 3)	-30046.0	NM_019466	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-30676581-4	chr10	30676485	30676685	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358842, intron 9 of 14)	intron (NM_001358842, intron 9 of 14)	-20718.0	NM_001111267	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-125527642-2	chr8	125527546	125527746	+	688.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357372, intron 1 of 21)	intron (NM_001357372, intron 1 of 21)	-34813.0	NM_001081337	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	2.66494181116305	2.2034496905604	2.25995799125768	1.9356806166765	2.30727745685549	2.21911661253729	2.4967193559824	1.59408325005609	-0.240754092071499	0.783958345722887	0.998431161219273
Merged-chr5-66186400-2	chr5	66186300	66186500	+	907.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_040695, intron 1 of 2)	MER2|DNA|TcMar-Tigger	4935.0	NR_040695	73639.0	Mm.48851	NR_040695	ENSMUSG00000107014	1700126H18Rik	-	RIKEN cDNA 1700126H18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-25859649-4	chr15	25859534	25859734	+	930.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034851, intron 1 of 8)	MLT1A1|LTR|ERVL-MaLR	16336.0	NM_001034851	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-96338792-4	chr10	96338684	96338884	+	986.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	112577.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-31772053-2	chr2	31771953	31772153	+	627.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001283045, intron 1 of 10)	intron (NM_001283045, intron 1 of 10)	11880.0	NM_001283045	11350.0	Mm.1318	NM_009594	ENSMUSG00000026842	Abl1	AI325092|Abl|E430008G22Rik|c-Abl	c-abl oncogene 1, non-receptor tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30547645-2	chr2	30547545	30547745	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47399.0	NM_030137	78617.0	Mm.40413	NM_030137	ENSMUSG00000047363	Cstad	9530039B02Rik	CSA-conditional, T cell activation-dependent protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-38503691-3	chr13	38503617	38503817	+	922.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289599, intron 8 of 9)	intron (NM_001289599, intron 8 of 9)	24197.0	NM_001289599	105245.0	Mm.28622	NM_145367	ENSMUSG00000038991	Txndc5	AL022641|ERp46|PC-TRP	thioredoxin domain containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-122307939-3	chr7	122307789	122307989	+	807.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316672, intron 2 of 16)	intron (NM_001316672, intron 2 of 16)	18764.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-57033229-2	chr17	57033110	57033310	+	564.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346527, intron 7 of 7)	intron (NM_001346527, intron 7 of 7)	-1703.0	NM_010613	16549.0	Mm.34296	NM_010613	ENSMUSG00000007670	Khsrp	6330409F21Rik|Fbp2|Fubp2|Ksrp	KH-type splicing regulatory protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-95294444-2	chr10	95294344	95294544	+	605.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001330138, intron 2 of 2)	intron (NM_001330138, intron 2 of 2)	29265.0	NM_001330138	12905.0	Mm.473739	NM_009950	ENSMUSG00000045867	Cradd	RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-35041776-2	chr9	35041667	35041867	+	917.849976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74961.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	2.78212690294204	2.43760823514958	2.19867466386483	2.92908202255652	2.80484478417005	2.29021723387461	3.39136573735528	2.30223869532233	0.321686124138655	0.670436860457135	0.99359666617512
Merged-chr7-141123158-4	chr7	141123059	141123259	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5353.0	NM_178381	71345.0	Mm.235813	NM_178381	ENSMUSG00000054662	Ano9	5430425C04Rik|Tmem16j|Tp53i5|Trp53i5	anoctamin 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-102913780-4	chr9	102913682	102913882	+	976.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	78862.0	NM_001284258	20187.0	Mm.335391	NM_013649	ENSMUSG00000032547	Ryk	AW536699|ERK-3|Vik	receptor-like tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-108809037-2	chr8	108808933	108809133	+	733.333374	f0_balb.idr|f0_c57.idr	intron (NM_007496, intron 3 of 9)	intron (NM_007496, intron 3 of 9)	94389.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-32858133-2	chr5	32858033	32858233	+	806.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR42-int|LTR|ERVK	-3903.0	NM_194340	215476.0	Mm.248721	NM_194340	ENSMUSG00000054280	Prr14l	6030436E02Rik|C330019G07Rik|Prl14l	proline rich 14-like	protein-coding	1.1283480077713	0.540445760649969	0.530536563407278	0.705721335155367	0.815456096327735	1.21865618606923	0.532731114982179	1.40157009660463	1.37110169980221	0.398288533789866	0.884476083278755
Merged-chr12-34672879-4	chr12	34672764	34672964	+	717.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271386, intron 3 of 27)	intron (NM_001271386, intron 3 of 27)	-143975.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-104522671-4	chr14	104522557	104522757	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026047)	promoter-TSS (NM_026047)	9.0	NM_026047	72486.0	Mm.291811	NM_026047	ENSMUSG00000022120	Rnf219	2610206B13Rik|2810449K13Rik|AI451544	ring finger protein 219	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-55918496-4	chr7	55918417	55918617	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011370, intron 23 of 30)	intron (NM_011370, intron 23 of 30)	43976.0	NM_001256133	93790.0	Mm.37249	NM_023647	ENSMUSG00000030452	Nipa2	2600017P10Rik|3830408P04Rik|AB041581	non imprinted in Prader-Willi/Angelman syndrome 2 homolog (human)	protein-coding	7.80349970721356	7.1904610802265	7.62846756950482	8.0137614873501	7.22085816632201	7.38232506125623	6.72772822086389	7.04087974270532	-0.607170521831435	0.00145130020586829	0.0263562561100016
Merged-chr1-131068376-4	chr1	131068273	131068473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008551, intron 1 of 9)	MTC|LTR|ERVL-MaLR	29470.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-62190942-1	chr10	62190842	62191042	+	867.6666869999999	f0_balb.idr	intron (NM_197996, intron 5 of 7)	intron (NM_197996, intron 5 of 7)	3285.0	NR_106122	102465767.0		NR_106122	ENSMUSG00000099185	Mir7662	Gm27876|mmu-mir-7662	microRNA 7662	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153350922-6	chr2	153350794	153350994	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039939, intron 1 of 11)	intron (NM_001039939, intron 1 of 11)	4755.0	NM_001039939	228790.0	Mm.330677	NM_001039939	ENSMUSG00000042548	Asxl1	mKIAA0978	additional sex combs like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81596048-2	chr10	81595948	81596148	+	631.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001346695, exon 5 of 14)	exon (NM_001346695, exon 5 of 14)	1319.0	NM_001359135	114606.0	Mm.206764	NM_053254	ENSMUSG00000034758	Tle6	1810057E06Rik|Grg6	transducin-like enhancer of split 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117601045-2	chr8	117600945	117601145	+	586.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172285, intron 21 of 32)	intron (NM_172285, intron 21 of 32)	70502.0	NM_028725	74032.0	Mm.296302	NM_028725	ENSMUSG00000034308	Sdr42e1	4632417N05Rik|AI117603	short chain dehydrogenase/reductase family 42E, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-11132061-2	chr16	11131961	11132161	+	622.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029582, intron 1 of 11)	B1_Mur3|SINE|Alu	2471.0	NM_029582	106200.0	Mm.291015	NM_029582	ENSMUSG00000022498	Txndc11	2810408E11Rik|AI427833|EFP1|Txdc11	thioredoxin domain containing 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-36226051-2	chr2	36225951	36226151	+	611.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4375.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-182283455-4	chr1	182283368	182283568	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007853)	promoter-TSS (NM_007853)	-667.0	NM_007853	13244.0	Mm.29648	NM_007853	ENSMUSG00000038633	Degs1	AA536663|Degs|Des1|Mdes	delta(4)-desaturase, sphingolipid 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-84077523-3	chr4	84077450	84077650	+	800.638855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32671.0	NR_130998	78238.0	Mm.243903	NR_130998	ENSMUSG00000085217	6030471H07Rik	-	RIKEN cDNA 6030471H07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-38620391-3	chr15	38620292	38620492	+	937.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR53_Mm|LTR|ERVK	-25458.0	NR_045757	69679.0	Mm.416890	NR_045757	ENSMUSG00000102106	2310043O21Rik	-	RIKEN cDNA 2310043O21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-4516367-4	chr8	4516293	4516493	+	877.241699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026058, intron 2 of 10)	intron (NM_026058, intron 2 of 10)	22988.0	NM_026058	67260.0	Mm.35511	NM_026058	ENSMUSG00000008206	Cers4	2900019C14Rik|Lass4|Trh1	ceramide synthase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-86202863-4	chr15	86202763	86202963	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11596.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-17633056-4	chr14	17632948	17633148	+	853.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27912.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-54695794-4	chr12	54695678	54695878	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001331162, exon 1 of 5)	exon (NM_001331162, exon 1 of 5)	116.0	NM_001331162	66266.0	Mm.156440	NM_025456	ENSMUSG00000054302	Eapp	1810011O16Rik	E2F-associated phosphoprotein	protein-coding	4.81616051165568	4.50040805890841	6.44772773210808	4.3991244811112	5.96338815467092	4.53366299550263	6.34070734032415	4.67605678088523	0.300855330488049	0.685268519968642	0.996533206832645
Merged-chr2-118591189-3	chr2	118591076	118591276	+	895.9722289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7035.0	NM_009773	12236.0	Mm.29133	NM_009773	ENSMUSG00000040084	Bub1b	AU045529|BUBR1	BUB1B, mitotic checkpoint serine/threonine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91433698-4	chr16	91433610	91433810	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27475.0	NM_008349	16155.0	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-172309861-4	chr1	172309762	172309962	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2505.0	NM_080419	140559.0	Mm.271717	NM_080419	ENSMUSG00000038034	Igsf8	ESTM34|EWI-2|KCT-4|PGRL	immunoglobulin superfamily, member 8	protein-coding	2.52026606828373	2.7048376027657	2.7253813183995	2.99530793321327	2.20376728925877	2.45784580495876	2.63653387950824	2.85062110319091	-0.386994665118338	0.59316185183304	0.9706660979479
Merged-chr7-114479983-4	chr7	114479887	114480087	+	951.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011055, intron 1 of 15)	intron (NM_011055, intron 1 of 15)	64733.0	NM_011055	18576.0	Mm.430730	NM_011055	ENSMUSG00000030671	Pde3b	9830102A01Rik|AI847709	phosphodiesterase 3B, cGMP-inhibited	protein-coding	2.10560090749505	2.11178410268212	1.1797847872628	1.41472141082505	2.49937233809225	3.05966396763643	2.88280836271244	1.15530728379596	1.81066355779152	0.0816328690983702	0.436669406827241
Merged-chr9-7863130-2	chr9	7863030	7863230	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007464, intron 1 of 8)	RLTR30B_MM|LTR|ERV1	10040.0	NM_007464	11796.0	Mm.2026	NM_007464	ENSMUSG00000032000	Birc3	AW107670|Api1|Api2|Birc2|C-IAP2|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF49|cIAP-1|cIAP-2|cIAP1|cIAP2	baculoviral IAP repeat-containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-99221045-4	chr5	99220916	99221116	+	907.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181318, intron 13 of 13)	RMER19C|LTR|ERVK	31911.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-102248573-2	chr15	102248473	102248673	+	714.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011244, intron 3 of 9)	intron (NM_011244, intron 3 of 9)	-2073.0	NM_001042727	19411.0	Mm.1273	NM_011244	ENSMUSG00000001288	Rarg	Nr1b3|RAR-gamma|RARD|RARgamma2	retinoic acid receptor, gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27721260-4	chr2	27721180	27721380	+	899.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290482, intron 1 of 9)	intron (NM_001290482, intron 1 of 9)	10697.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55101895-4	chr14	55101786	55101986	+	758.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007455, intron 14 of 21)	intron (NM_007455, intron 14 of 21)	4707.0	NM_001303502	11766.0	Mm.238879	NM_007455	ENSMUSG00000040701	Ap1g2	Adtg2|G2ad	adaptor protein complex AP-1, gamma 2 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-155624940-3	chr2	155624837	155625037	+	691.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085378, intron 21 of 41)	intron (NM_001085378, intron 21 of 41)	2057.0	NR_030757	735275.0		NR_030757	ENSMUSG00000076312	Mir499	Mirn499|mir-499|mmu-mir-499	microRNA 499	ncRNA	1.80140817880676	0.906418960194482	1.57079131005784	0.877424716077015	1.81840638251923	1.14698209485446	1.80933888718744	1.08580712767161	0.511259675621043	0.698437418176317	0.998284579433352
Merged-chr8-95141875-4	chr8	95141775	95141975	+	982.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010631, intron 1 of 19)	intron (NM_010631, intron 1 of 19)	665.0	NM_010631	16582.0	Mm.378951	NM_010631	ENSMUSG00000031788	Kifc3	AI325457|BB123200	kinesin family member C3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-121297841-8	chr9	121297719	121297919	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_152160, exon 1 of 18)	non-coding (NR_152160, exon 1 of 18)	317.0	NR_152160	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	3.01642506233649	2.72477097566565	2.01192927353924	3.02993977234466	3.10547549699555	2.74512956569452	1.5302943825316	3.19133061984425	0.0669095535364207	0.934107200685349	0.998431161219273
Merged-chr1-184046512-2	chr1	184046412	184046612	+	713.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_022019, intron 2 of 3)	intron (NM_022019, intron 2 of 3)	12131.0	NM_022019	63953.0	Mm.404024	NM_022019	ENSMUSG00000039384	Dusp10	2610306G15Rik|AI158871|MKP-5|MKP5	dual specificity phosphatase 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-103249063-3	chr11	103248977	103249177	+	817.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016896, intron 1 of 15)	intron (NM_016896, intron 1 of 15)	18324.0	NM_016896	53859.0	Mm.158981	NM_016896	ENSMUSG00000020941	Map3k14	Nik|aly	mitogen-activated protein kinase kinase kinase 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-21963210-3	chr3	21963122	21963322	+	930.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-113430.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-57910997-4	chr9	57910932	57911132	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001122873)	promoter-TSS (NM_001122873)	46.0	NM_001122873	69459.0	Mm.41735	NM_027086	ENSMUSG00000055720	Ubl7	2300004C15Rik	ubiquitin-like 7 (bone marrow stromal cell-derived)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34032307-4	chr17	34032210	34032410	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001205216)	promoter-TSS (NM_001205216)	-40.0	NM_001205216	20182.0	Mm.1243	NM_011306	ENSMUSG00000039656	Rxrb	AL023085|H-2RIIBP|Nr2b2|RCoR-1|Rub	retinoid X receptor beta	protein-coding	1.56911798181454	2.93312072273028	2.10998866511638	1.43612063755035	1.58503874129718	3.27731914542451	3.51766935753574	1.15401773271111	1.13481086932754	0.262271320584778	0.763646166730991
Merged-chr5-107896446-2	chr5	107896346	107896546	+	795.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4082.0	NM_016980	100503670.0	Mm.277897	NM_016980	ENSMUSG00000058558	Rpl5	U21RNA	ribosomal protein L5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-127331734-2	chr3	127331637	127331837	+	878.75	f0_c57.idr|f1_c57bl6.idr	intron (NM_001327938, intron 1 of 47)	MTC|LTR|ERVL-MaLR	77321.0	NM_001327939	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	3.91219845077642	3.72019799250774	2.6878076310074	3.65416391547034	1.45033201482864	1.3538266246538	2.08835744240662	1.24464630659764	-4.2070703804464	7.86867242688693e-06	0.000376628983156075
Merged-chr9-25486464-4	chr9	25486364	25486564	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 2 of 7)	intron (NM_026189, intron 2 of 7)	4867.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-155152950-3	chr4	155152826	155153026	+	652.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	66322.0	NM_001356327	76866.0	Mm.200590	NM_001081100	ENSMUSG00000029049	Morn1	2900057D20Rik|4930417P05Rik|AU042805	MORN repeat containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-72606038-2	chr14	72605938	72606138	+	891.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_207636, intron 3 of 25)	intron (NM_207636, intron 3 of 25)	103965.0	NM_207636	319448.0	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-113954604-4	chr5	113954491	113954691	+	818.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198109, intron 10 of 14)	intron (NM_198109, intron 10 of 14)	39166.0	NM_198109	231637.0	Mm.389682	NM_198109	ENSMUSG00000042121	Ssh1	AW551225|Gm1394|Gm1395|SSH-1|SSH-1L	slingshot protein phosphatase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-134543439-4	chr4	134543344	134543544	+	942.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029100, intron 6 of 11)	intron (NM_029100, intron 6 of 11)	-8057.0	NM_029759	76824.0	Mm.30153	NM_029759	ENSMUSG00000046671	Mtfr1l	2410166I05Rik|AI480750|Fam54b	mitochondrial fission regulator 1-like	protein-coding	-1.53362919331644	-1.50201671710775	-1.51157659084044	-1.08120497225282	-1.53141005593807	-1.49994505258991	-1.50941244497383	-1.51802371459528	-1.94474658522739	0.577200604274218	1
Merged-chr9-90269538-2	chr9	90269452	90269652	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 1 of 12)	intron (NM_194334, intron 1 of 12)	1217.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	1.8957714720429	3.11722096516787	2.34888652847954	2.50811894871533	1.55404920718445	2.30656758300197	2.22899254413599	2.94443110274073	-0.385989662287475	0.656350324308397	0.988505467120973
Merged-chr3-122629744-4	chr3	122629593	122629793	+	812.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9979.0	NM_001114665	214459.0	Mm.209491	NM_153118	ENSMUSG00000039735	Fnbp1l	2610318I01Rik|AW548221|TOCA1|toca-1	formin binding protein 1-like	protein-coding	2.01254751850924	1.5834427847221	1.3939448765091	1.04552071201003	1.2916936821988	1.29786039316774	1.07720318081904	0.849195364542177	-1.63203696309184	0.199664291593304	0.683271879290312
Merged-chr8-36159168-6	chr8	36159095	36159295	+	907.555542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151736, intron 2 of 3)	intron (NR_151736, intron 2 of 3)	3185.0	NR_151736	330738.0	Mm.128075	NR_151736	ENSMUSG00000109704	Gm38414	A230084N10|Gm45568	predicted gene, 38414	ncRNA	1.22039277478835	1.63435469590871	0.808106550542759	1.28978809556912	0.782237458335473	1.05045712340856	1.68711765680451	1.41927784123927	0.0555364841920962	0.967568296215151	0.998431161219273
Merged-chr3-96601037-4	chr3	96600950	96601150	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163170)	promoter-TSS (NM_001163170)	-83.0	NM_001163170	280411.0	Mm.482147	NM_001163170	ENSMUSG00000049288	Lix1l	D130027M04Rik	Lix1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-64154846-4	chr13	64154724	64154924	+	707.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1625.0	NM_175494	238673.0	Mm.300065	NM_175494	ENSMUSG00000044934	Zfp367	8030486J21Rik|ZFF29a|ZFF29b|Znf367	zinc finger protein 367	protein-coding	1.49092931905175	0.962983749491355	1.49173302607817	1.1358867092002	1.38622938080994	1.20229695094435	2.04547716599668	1.89073377052484	1.36227446330087	0.257363877985117	0.756455611970954
Merged-chr2-59187564-4	chr2	59187465	59187665	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 1 of 20)	MIRb|SINE|MIR	26715.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-119002519-2	chr4	119002419	119002619	+	545.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40552.0	NM_133892	100470.0	Mm.26698	NM_133892	ENSMUSG00000024903	Lao1	AW990848	L-amino acid oxidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-10888083-1	chr15	10887983	10888183	+	687.0	f0_balb.idr	Intergenic	MER97a|DNA|hAT-Tip100	59032.0	NR_040357	100502601.0	Mm.399434	NR_040357		Gm19276	-	predicted gene, 19276	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-52191994-4	chr6	52191941	52192141	+	962.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008265)	promoter-TSS (NM_008265)	-338.0	NM_008265	15401.0	Mm.439647	NM_008265	ENSMUSG00000000942	Hoxa4	AV206827|Hox-1.4	homeobox A4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-39370872-4	chr18	39370765	39370965	+	901.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361073, intron 21 of 21)	Charlie4z|DNA|hAT-Charlie	116380.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-105733533-4	chr12	105733447	105733647	+	973.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030187, intron 6 of 17)	intron (NM_030187, intron 6 of 17)	27565.0	NM_030187	78801.0	Mm.36006	NM_030187	ENSMUSG00000041323	Ak7	4930502N02Rik|AK 7	adenylate kinase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-61684323-4	chr11	61684211	61684411	+	999.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178618)	promoter-TSS (NM_178618)	-99.0	NM_178618	69640.0	Mm.458559	NM_178618	ENSMUSG00000042377	Fam83g	2310040C09Rik|AI506990|wly	family with sequence similarity 83, member G	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-34862256-2	chr18	34862156	34862356	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007913, intron 1 of 1)	intron (NM_007913, intron 1 of 1)	1049.0	NM_007913	13653.0	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-137062021-3	chr5	137061920	137062120	+	770.133301	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008871, exon 9 of 9)	3' UTR (NM_008871, exon 9 of 9)	10252.0	NM_008871	18787.0	Mm.250422	NM_008871	ENSMUSG00000037411	Serpine1	PAI-1|PAI1|Planh1	serine (or cysteine) peptidase inhibitor, clade E, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70710907-2	chr8	70710807	70711007	+	905.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7636.0	NM_001195253	100502950.0	Mm.52981	NM_001195253	ENSMUSG00000095026	Gm3336	100041434|2410018E23Rik	predicted gene 3336	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-94900953-3	chr4	94900885	94901085	+	836.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27858.0	NM_027089	67753.0	Mm.25097	NM_027089	ENSMUSG00000028575	Eqtn	1700028B15Rik|4930579C15Rik|Afaf|C81058|Eqtl|Eqts	equatorin, sperm acrosome associated	protein-coding	2.32755512843464	3.49094758152484	3.63931240961995	1.42612191674443	2.03820175756779	2.67105876450931	4.02679165106433	2.85409422750378	0.189803151223043	0.822039366348834	0.998431161219273
Merged-chr19-7019461-4	chr19	7019368	7019568	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153795)	promoter-TSS (NM_153795)	1.0	NM_153795	108101.0	Mm.157591	NM_153795	ENSMUSG00000024965	Fermt3	C79673|Kindlin3	fermitin family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19467782-4	chr7	19467676	19467876	+	950.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4|SINE|ID	-9282.0	NM_172279	232944.0	Mm.260504	NM_172279	ENSMUSG00000030397	Mark4	2410090P21Rik|C79806|Markl1	MAP/microtubule affinity regulating kinase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-10743824-6	chr17	10743707	10743907	+	834.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027032, intron 2 of 4)	intron (NM_027032, intron 2 of 4)	96384.0	NM_027032	69310.0	Mm.18889	NM_027032	ENSMUSG00000037196	Pacrg	1700008H23Rik	PARK2 co-regulated	protein-coding	1.22057701253132	0.571142495821994	0.558055721636818	0.547765754290699	1.87687314319759	0.574055427689827	1.12369308750866	1.07810319500304	2.07529074061516	0.204567683781504	0.691770876553125
Merged-chr2-129490645-2	chr2	129490537	129490737	+	855.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177653, intron 1 of 6)	RLTR42-int|LTR|ERVK	45965.0	NM_177653	228592.0	Mm.452175	NM_177653	ENSMUSG00000043727	F830045P16Rik	Sirpb3	RIKEN cDNA F830045P16 gene	protein-coding	1.09026658649547	1.16962685284585	2.01842822538224	2.0687953955173	1.6262297748033	2.10857223331434	2.43417230264448	2.07998808008848	1.13251459734907	0.303606096038578	0.805462835517226
Merged-chr11-96006946-1	chr11	96006846	96007046	+	716.0	f1_c57bl6.idr	Intergenic	CpG-2488	-1002.0	NM_009951	140486.0	Mm.294769	NM_009951	ENSMUSG00000013415	Igf2bp1	AL024068|AW549074|CRD-BP|Crdbp|D030026A21Rik|D11Moh40e|D11Moh45|IMP-1|IMP1|Neilsen|ZBP-1|Zbp1|mir-3063	insulin-like growth factor 2 mRNA binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-13161442-2	chr8	13161342	13161542	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010684, intron 1 of 8)	intron (NM_010684, intron 1 of 8)	2281.0	NM_010684	16783.0	Mm.16716	NM_010684	ENSMUSG00000031447	Lamp1	CD107a|LGP-120|LGP-A|Lamp-1|P2B|Perk	lysosomal-associated membrane protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-55472806-2	chr12	55472706	55472906	+	673.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28|LTR|ERVL	19841.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-76942109-3	chr14	76942048	76942248	+	766.305542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	94469.0	NM_172488	210808.0	Mm.89278	NM_172488	ENSMUSG00000044350	Lacc1	9030625A04Rik	laccase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-7898712-2	chr9	7898612	7898812	+	601.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25542.0	NM_007464	11796.0	Mm.2026	NM_007464	ENSMUSG00000032000	Birc3	AW107670|Api1|Api2|Birc2|C-IAP2|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF49|cIAP-1|cIAP-2|cIAP1|cIAP2	baculoviral IAP repeat-containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-69533502-6	chr13	69533394	69533594	+	994.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001169131, exon 1 of 13)	5' UTR (NM_001169131, exon 1 of 13)	370.0	NM_198600	210106.0	Mm.315959	NM_198600	ENSMUSG00000034575	Papd7	LAK-1|POLK|Pols|TRF4|TRF4-1	PAP associated domain containing 7	protein-coding	1.90580223151251	1.06362527116803	2.07925521381929	1.41766492373512	1.92271006243591	1.06807392778034	2.09690536983963	1.42441384740975	0.0396196041709668	0.973446672883823	0.998431161219273
Merged-chr11-98685405-2	chr11	98685305	98685505	+	548.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009439, intron 1 of 11)	intron (NM_009439, intron 1 of 11)	2851.0	NM_009439	22123.0	Mm.12194	NM_009439	ENSMUSG00000017221	Psmd3	AI255837|AntP91a|D11Bwg1349e|Psd3|Tstap91a	proteasome (prosome, macropain) 26S subunit, non-ATPase, 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-99670986-4	chr6	99670900	99671100	+	855.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4229.0	NM_025829	66892.0	Mm.32889	NM_025829	ENSMUSG00000093661	Eif4e3	1300018P11Rik|AI451927|eIF4E-3	eukaryotic translation initiation factor 4E member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-64452925-4	chr9	64452820	64453020	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001134399, intron 1 of 24)	intron (NM_001134399, intron 1 of 24)	67294.0	NM_001134399	214058.0	Mm.127721	NM_172522	ENSMUSG00000036466	Megf11	2410080H04Rik|D130061K05	multiple EGF-like-domains 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-148048551-6	chr2	148048518	148048718	+	943.0595089999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1649.0	NM_010446	15376.0	Mm.938	NM_010446	ENSMUSG00000037025	Foxa2	HNF3-beta|HNF3beta|Hnf-3b|Hnf3b|Tcf-3b|Tcf3b	forkhead box A2	protein-coding	0.874317459283802	0.0274874398139093	0.021629934330387	0.453095381172426	0.0106856025997923	0.230851119389765	0.208519730897683	0.0178928523740771	-2.23192869487633	0.294252958108147	1
Merged-chr6-116007968-3	chr6	116007902	116008102	+	755.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12997.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118666250-4	chr9	118666147	118666347	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 8 of 27)	intron (NM_133721, intron 8 of 27)	-45445.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-120858392-1	chr9	120858292	120858492	+	783.5	f0_balb.idr	Intergenic	MTEa|LTR|ERVL-MaLR	56858.0	NR_040742	76402.0	Mm.436588	NR_040742	ENSMUSG00000100146	1700020M21Rik	-	RIKEN cDNA 1700020M21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59481318-4	chr15	59481225	59481425	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026746, intron 4 of 6)	intron (NM_026746, intron 4 of 6)	107127.0	NM_001164604	68501.0	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	2.92707961330138	3.64366158142445	2.18526354413433	3.56420091720146	2.85508273826054	2.97450328614072	3.10617061541854	4.26140594362286	0.389204420105007	0.563308439517146	0.960367595640396
Merged-chr5-151645027-2	chr5	151644927	151645127	+	986.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027009, intron 5 of 8)	intron (NM_027009, intron 5 of 8)	6181.0	NM_027009	69263.0	Mm.12553	NM_027009	ENSMUSG00000033970	Rfc3	2810416I22Rik|38kDa|AU022547|Recc3	replication factor C (activator 1) 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-88300436-4	chr8	88300330	88300530	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037724, intron 3 of 27)	intron (NM_001037724, intron 3 of 27)	6226.0	NM_001037724	11513.0	Mm.288206	NM_007406	ENSMUSG00000031659	Adcy7	AA407758	adenylate cyclase 7	protein-coding	3.44844854052644	3.79198474965342	4.28235490077563	4.16941757602203	4.54986219597381	4.39374212569372	4.3671535723109	4.07634678461229	0.537287032221469	0.213330332349188	0.703038353542171
Merged-chr7-97781013-4	chr7	97780887	97781087	+	931.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-7554.0	NM_001357365	18479.0	Mm.260227	NM_011035	ENSMUSG00000030774	Pak1	AW045634|PAK-1|Paka	p21 (RAC1) activated kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117988178-2	chr11	117988078	117988278	+	894.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_151726, intron 1 of 9)	intron (NR_151726, intron 1 of 9)	1321.0	NR_151726	74451.0	Mm.28864	NM_133757	ENSMUSG00000017715	Pgs1	2610019F11Rik|4933424M23Rik|SAF	phosphatidylglycerophosphate synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166081077-1	chr2	166080977	166081177	+	778.0	f1_c57bl6.idr	intron (NM_001252579, intron 13 of 20)	intron (NM_001252579, intron 13 of 20)	74208.0	NM_001355619	72043.0	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-125850016-1	chr8	125849916	125850116	+	667.0	f0_balb.idr	intron (NM_175561, intron 15 of 33)	intron (NM_175561, intron 15 of 33)	-47898.0	NR_155422	102632990.0	Mm.429446	NR_155422		A730098A19Rik	-	RIKEN cDNA A730098A19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111443740-3	chr12	111443680	111443880	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009396, intron 1 of 11)	intron (NM_009396, intron 1 of 11)	1119.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-4460302-4	chr2	4460228	4460428	+	974.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 2 of 23)	intron (NM_001177843, intron 2 of 23)	59352.0	NM_001177843	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-130902895-2	chr4	130902795	130902995	+	920.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10439.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-85933369-4	chr1	85933288	85933488	+	583.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR48B|LTR|ERV1	4905.0	NR_037692	71141.0	Mm.314965	NR_037692	ENSMUSG00000026224	4933407L21Rik	-	RIKEN cDNA 4933407L21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-35288999-2	chr11	35288899	35289099	+	651.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011412, intron 4 of 35)	intron (NM_011412, intron 4 of 35)	167543.0	NM_011412	20564.0	Mm.478604	NM_011412	ENSMUSG00000056427	Slit3	Slil2|Slit1|b2b2362.1Clo	slit guidance ligand 3	protein-coding	0.800800924146701	0.444644626937475	0.705538889696028	0.968274577152807	0.226906412719295	0.248057703299724	0.241197185567695	0.235326404322141	-4.24010452921065	0.0257958436276943	1
Merged-chr17-70969888-2	chr17	70969748	70969948	+	705.875	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20668.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-3719380-3	chr7	3719272	3719472	+	871.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011095, exon 4 of 15)	exon (NM_011095, exon 4 of 15)	1010.0	NM_001357394	18733.0	Mm.326531	NM_011095	ENSMUSG00000058818	Pirb	Gp91|LIR-3|Lilrb3|PIR-B	paired Ig-like receptor B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-40656608-3	chr12	40656505	40656705	+	762.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 8 of 52)	intron (NM_172803, intron 8 of 52)	210552.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-164079042-2	chr1	164078942	164079142	+	569.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164059, intron 7 of 7)	intron (NM_001164059, intron 7 of 7)	16966.0	NM_011346	20343.0	Mm.1461	NM_011346	ENSMUSG00000026581	Sell	AI528707|CD62L|L-selectin|LECAM-1|Lnhr|Ly-22|Ly-m22|Lyam-1|Lyam1	selectin, lymphocyte	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-93683152-4	chr16	93683029	93683229	+	983.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173047)	promoter-TSS (NM_173047)	-90.0	NM_173047	109857.0	Mm.4512	NM_173047	ENSMUSG00000022947	Cbr3	1110001J05Rik|C81353	carbonyl reductase 3	protein-coding	-0.68063221780274	-0.670148869830999	-0.67358785862985	-0.248670345527081	-0.679979053862105	-0.669373100413457	-0.0913197828529291	-0.675775397699688	0.585979169389436	0.840982200956442	1
Merged-chr16-11385483-2	chr16	11385383	11385583	+	888.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028964, intron 4 of 20)	intron (NM_028964, intron 4 of 20)	-20165.0	NM_001290148	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26531026-4	chr17	26530986	26531186	+	905.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-22614.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	2.40702834414612	3.80919554388254	2.62652187353861	2.40120195345555	2.66886714808199	3.83551802333212	2.49698001694141	3.48530204265865	0.465748045693675	0.518278167643796	0.947641799425091
Merged-chr11-40855975-4	chr11	40855871	40856071	+	971.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3C|LINE|L1	-100685.0	NM_009831	12450.0	Mm.2103	NM_009831	ENSMUSG00000020326	Ccng1	AI314029	cyclin G1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-38090543-2	chr16	38090396	38090596	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_019827, exon 1 of 11)	5' UTR (NM_019827, exon 1 of 11)	-1236.0	NR_033221	414072.0	Mm.483602	NR_033221		BC031361	-	cDNA sequence BC031361	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-43475870-2	chr7	43475770	43475970	+	680.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164518, intron 7 of 7)	intron (NM_001164518, intron 7 of 7)	12637.0	NM_001290316	75690.0	Mm.30200	NM_001290316	ENSMUSG00000070604	Vsig10l	-	V-set and immunoglobulin domain containing 10 like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-103406618-1	chr11	103406518	103406718	+	594.0	f1_balb.idr	intron (NM_183034, intron 1 of 11)	intron (NM_183034, intron 1 of 11)	6046.0	NM_183034	353047.0	Mm.18556	NM_183034	ENSMUSG00000034247	Plekhm1	AP162|B2|BC038943|D330036J23Rik	pleckstrin homology domain containing, family M (with RUN domain) member 1	protein-coding	-0.398908008097453	-0.526262977191021	-0.529755345577458	-0.532441571470123	0.0956271953555874	-0.525474096289092	-0.528986110019585	-0.233852789715953	2.53094716978972	0.333214516795599	1
Merged-chr6-135252706-7	chr6	135252628	135252828	+	977.257141	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080553, intron 1 of 5)	intron (NM_001080553, intron 1 of 5)	1608.0	NM_010352	14840.0	Mm.272306	NM_010352	ENSMUSG00000030206	Gsg1	-	germ cell associated 1	protein-coding	3.85355183234577	3.09304010765983	3.97459562651806	3.9953918815859	4.71584147945892	4.5080563312482	4.31562134528408	4.64510630295028	1.0311005043677	0.0158763200910836	0.151018040528135
Merged-chr11-68901006-2	chr11	68900906	68901106	+	676.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_003373)	promoter-TSS (NR_003373)	-560.0	NM_009080	19941.0	Mm.3229	NM_009080	ENSMUSG00000060938	Rpl26	SIG-20	ribosomal protein L26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117126653-2	chr8	117126553	117126753	+	555.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021486, intron 7 of 10)	MIR|SINE|MIR	30788.0	NM_001163028	63857.0	Mm.174133	NM_021486	ENSMUSG00000031845	Bco1	Bcdo|Bcdo1|Bcmo1|CMO1|Cmoi|beta-CD|betaCMOOX	beta-carotene oxygenase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5402229-4	chr17	5402129	5402329	+	953.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16538.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-17625202-2	chr6	17625113	17625313	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-11797.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-53420011-3	chr19	53419909	53420109	+	957.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER58A|DNA|hAT-Charlie	-29375.0	NM_172429	76479.0	Mm.313687	NM_172429	ENSMUSG00000025024	Smndc1	-	survival motor neuron domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-86588662-2	chr11	86588562	86588762	+	656.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356531, intron 10 of 11)	B2_Mm1t|SINE|B2	-4504.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-65722726-4	chr5	65722607	65722807	+	897.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MERV1_I-int|LTR|ERV1	-24851.0	NM_001081321	71521.0	Mm.278974	NM_027818	ENSMUSG00000029202	Pds5a	9030416H16Rik|E230024D05Rik|mKIAA0648	PDS5 cohesin associated factor A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153240862-5	chr2	153240754	153240954	+	890.2000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080463)	promoter-TSS (NM_080463)	504.0	NM_018807	54711.0	Mm.103199	NM_018807	ENSMUSG00000051413	Plagl2	AU018672|AW552839|mKIAA0198	pleiomorphic adenoma gene-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-119848259-4	chr6	119848154	119848354	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053204)	promoter-TSS (NM_053204)	61.0	NR_030776	67289.0	Mm.418299	NR_030776		3110021A11Rik	-	RIKEN cDNA 3110021A11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-142345738-6	chr6	142345628	142345828	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183165)	promoter-TSS (NM_183165)	31.0	NM_183165	232491.0	Mm.490474	NM_183165	ENSMUSG00000041671	Pyroxd1	-	pyridine nucleotide-disulphide oxidoreductase domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-108485431-4	chr5	108485329	108485529	+	876.68335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172716, intron 6 of 10)	intron (NM_172716, intron 6 of 10)	24097.0	NM_172716	69587.0	Mm.261218	NM_172716	ENSMUSG00000033623	Pcgf3	2310035N15Rik|AI662857|D630042K08Rik|DONG1|E430039C14|RNF3A|Rnf3	polycomb group ring finger 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-150842338-4	chr2	150842221	150842421	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151505, intron 5 of 12)	intron (NR_151505, intron 5 of 12)	249.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129912461-1	chr2	129912361	129912561	+	898.6666869999999	f0_balb.idr	Intergenic	Intergenic	-99879.0	NM_009374	21818.0	Mm.2961	NM_009374	ENSMUSG00000027401	Tgm3	AI893889|TG E|TG(E)|TGE|TGase E|TGase-3|we	transglutaminase 3, E polypeptide	protein-coding	2.92144989286742	2.13823481113018	2.99234887462865	2.34491215867616	2.9452422901512	2.66271209388747	3.52423511225812	2.61808844245597	0.632789093585442	0.378500596480242	0.871397690824179
Merged-chr13-48546658-4	chr13	48546545	48546745	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-8373.0	NR_029725	387244.0		NR_029725	ENSMUSG00000065421	Mirlet7a-1	Let-7a|Mirnlet7a|Mirnlet7a-1|let-7a-1	microRNA let7a-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96574799-2	chr3	96574785	96574985	+	650.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-8084.0	NR_040409	100038464.0	Mm.475126	NR_040409	ENSMUSG00000074398	Gm15441	-	predicted gene 15441	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-11544526-2	chr8	11544426	11544626	+	588.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359137, intron 3 of 14)	B3|SINE|B2	6245.0	NM_024248	71941.0	Mm.196576	NM_024248	ENSMUSG00000056228	Cars2	2310051N18Rik|2410044A07Rik|D530030H10Rik|cysRS	cysteinyl-tRNA synthetase 2 (mitochondrial)(putative)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-100800650-4	chr6	100800534	100800734	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198612, intron 6 of 6)	intron (NM_198612, intron 6 of 6)	-33004.0	NM_182939	232314.0	Mm.27223	NM_182939	ENSMUSG00000052144	Ppp4r2	BE691708|C230060M08Rik	protein phosphatase 4, regulatory subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-65300815-3	chr18	65300709	65300909	+	839.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037294, intron 5 of 12)	intron (NM_001037294, intron 5 of 12)	51948.0	NR_029600	387231.0		NR_029600	ENSMUSG00000065402	Mir122	Mir122a|Mirn122a|mir-122|mmu-mir-122	microRNA 122	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83298361-1	chr11	83298261	83298461	+	571.0	f0_balb.idr	exon (NM_134025, exon 2 of 4)	exon (NM_134025, exon 2 of 4)	616.0	NM_134025	103737.0	Mm.102205	NM_134025	ENSMUSG00000018733	Pex12	AI451906	peroxisomal biogenesis factor 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-98843957-1	chr15	98843857	98844057	+	540.0	f1_c57bl6.idr	exon (NM_001033276, exon 40 of 55)	exon (NM_001033276, exon 40 of 55)	-12449.0	NM_016781	19082.0	Mm.6670	NM_016781	ENSMUSG00000067713	Prkag1	AA571379|BB036179|Prkaac	protein kinase, AMP-activated, gamma 1 non-catalytic subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-118900582-3	chr14	118900488	118900688	+	970.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360411, intron 11 of 21)	intron (NM_001360411, intron 11 of 21)	22203.0	NM_001360413	66573.0	Mm.87456	NM_025943	ENSMUSG00000042156	Dzip1	2510025K24Rik|2810422M04Rik	DAZ interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-52309375-4	chr10	52309262	52309462	+	931.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025705, intron 6 of 10)	intron (NM_025705, intron 6 of 10)	72762.0	NM_053187	94221.0	Mm.390258	NM_053187	ENSMUSG00000019861	Gopc	2210402P09Rik|AI844555|CAL|FIG|GOPC1|PIST	golgi associated PDZ and coiled-coil motif containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-54054392-4	chr10	54054310	54054510	+	978.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008548, intron 2 of 12)	MTD|LTR|ERVL-MaLR	21386.0	NM_008548	17155.0	Mm.117294	NM_008548	ENSMUSG00000003746	Man1a	Man1a1|PCR1	mannosidase 1, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81302739-2	chr15	81302639	81302839	+	590.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-50877.0	NR_077230	78102.0	Mm.296832	NR_077229	ENSMUSG00000115970	8430426J06Rik	-	RIKEN cDNA 8430426J06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-70176427-2	chr16	70176327	70176527	+	931.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-137522.0	NM_028803	74185.0	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30364114-4	chr2	30363997	30364197	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175392)	promoter-TSS (NM_175392)	-136.0	NM_001242407	108958.0	Mm.254974	NM_175392	ENSMUSG00000026858	Miga2	5730472N09Rik|AA408683|AI790341|C9orf54|Fam73b|R74766	mitoguardin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116089200-4	chr11	116089101	116089301	+	890.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-2206.0	NM_001347642	22378.0	Mm.284792	NM_016852	ENSMUSG00000034341	Wbp2	-	WW domain binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-66388319-4	chr7	66388234	66388434	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146191)	promoter-TSS (NM_146191)	7.0	NM_146191	233328.0	Mm.33284	NM_146191	ENSMUSG00000015133	Lrrk1	AW319595|C230002E15Rik|D130026O16Rik|mKIAA1790	leucine-rich repeat kinase 1	protein-coding	6.1821029572585	6.02531474424122	5.23193654800547	5.48886616095119	5.97953230954787	5.76696839645029	4.6677831168522	5.51277594687428	-0.247866839255676	0.442931817200999	0.911647291190116
Merged-chr8-84986056-6	chr8	84985940	84986140	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-4555.0	NM_133255	170833.0	Mm.247775	NM_133255	ENSMUSG00000052566	Hook2	A630054I03Rik	hook microtubule tethering protein 2	protein-coding	4.49612911725526	4.55686659899375	4.57025786868647	5.13453677838637	3.86300410595575	5.21791405897196	4.55240156631818	5.42479504356191	0.208042424809077	0.611004316316366	0.975334764473647
Merged-chr17-64660964-2	chr17	64660864	64661064	+	792.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008549, intron 6 of 21)	L1_Rod|LINE|L1	59315.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-52488017-4	chr6	52487930	52488130	+	859.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4421.0	NR_046049	74304.0	Mm.490579	NR_046049	ENSMUSG00000107895	1700094M24Rik	-	RIKEN cDNA 1700094M24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-122019444-2	chr3	122019344	122019544	+	677.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1-int|LTR|ERVL-MaLR	-25016.0	NM_007378	11304.0	Mm.3918	NM_007378	ENSMUSG00000028125	Abca4	AW050280|Abc10|Abcr|D430003I15Rik|RmP	ATP-binding cassette, sub-family A (ABC1), member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-163415941-2	chr2	163415841	163416041	+	557.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025699, intron 1 of 3)	MT2C_Mm|LTR|ERVL	3529.0	NM_025699	66680.0	Mm.25119	NM_025699	ENSMUSG00000035399	Oser1	3230401D17Rik|AI256769|Perit1	oxidative stress responsive serine rich 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-59675770-4	chr13	59675645	59675845	+	909.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027307)	promoter-TSS (NM_027307)	39.0	NM_001035122	105348.0	Mm.171335	NM_027307	ENSMUSG00000021556	Golm1	2310001L02Rik|AW125446|D030064E01Rik|GP73|Golph2|PSEC0257	golgi membrane protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70595826-4	chr11	70595715	70595915	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016713, intron 1 of 30)	intron (NM_016713, intron 1 of 30)	-20079.0	NM_001145537	668433.0	Mm.425687	NM_001145537	ENSMUSG00000087279	4930544D05Rik	-	RIKEN cDNA 4930544D05 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-75887805-2	chr10	75887705	75887905	+	614.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-5593.0	NR_152573	70377.0	Mm.275878	NM_024440	ENSMUSG00000009092	Derl3	1810006I20Rik|1810063P04Rik|IZP6|derlin-3	Der1-like domain family, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83045533-2	chr6	83045433	83045633	+	636.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013586, intron 4 of 13)	B1_Mus1|SINE|Alu	-4178.0	NR_106007	102465630.0		NR_106007	ENSMUSG00000099035	Mir7040	Gm27489|mmu-mir-7040	microRNA 7040	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-66813874-2	chr10	66813774	66813974	+	723.708374	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	106510.0	NR_138560	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80740713-2	chr10	80740613	80740813	+	639.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007460, intron 1 of 30)	PB1D10|SINE|Alu	1562.0	NM_007460	11776.0	Mm.27082	NM_007460	ENSMUSG00000020198	Ap3d1	AA407035|Ap3d|Bolvr|mBLVR1|mh|mocha	adaptor-related protein complex 3, delta 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-8208567-2	chr15	8208467	8208667	+	591.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162906, intron 21 of 52)	MLT1E2|LTR|ERVL-MaLR	39461.0	NM_001162906	73692.0	Mm.164436	NM_001162906	ENSMUSG00000039801	2410089E03Rik	4732468D17Rik|Hug|Jbts17|b2b012Clo	RIKEN cDNA 2410089E03 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97315228-3	chr11	97315141	97315341	+	837.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025927)	promoter-TSS (NM_025927)	-475.0	NM_025927	67036.0	Mm.5381	NM_025927	ENSMUSG00000018882	Mrpl45	2600005P05Rik|AU043542|R75241	mitochondrial ribosomal protein L45	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-40851692-4	chr4	40851590	40851790	+	983.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022305, intron 1 of 5)	intron (NM_022305, intron 1 of 5)	-1552.0	NR_039584	100628614.0		NR_039584	ENSMUSG00000096377	Mir5123	mmu-mir-5123|mu-mir-5123	microRNA 5123	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-24780795-1	chr12	24780695	24780895	+	959.0	f0_balb.idr	Intergenic	Intergenic	-50804.0	NM_026037	67216.0	Mm.167671	NM_026037	ENSMUSG00000020646	Mboat2	2810049G06Rik|AU022889|AW547221|LPCAT4|Moact2|Oact2	membrane bound O-acyltransferase domain containing 2	protein-coding	1.37631759515428	2.06254305387212	2.43765319242894	1.20406418764758	1.96925030100731	1.92238075186622	2.25563503765806	2.61833469972796	0.86956994624961	0.391821639042386	0.880996748971749
Merged-chr17-5747611-4	chr17	5747574	5747774	+	945.522217	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 8 of 8)	intron (NM_146073, intron 8 of 8)	-50983.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-29252321-4	chr6	29252246	29252446	+	954.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20142.0	NM_001190461	69573.0	Mm.45161	NM_023516	ENSMUSG00000043421	Hilpda	2310016C08Rik|AW049004|Hig2	hypoxia inducible lipid droplet associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-113840630-3	chr5	113840535	113840735	+	967.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-10134.0	NM_009151	20345.0	Mm.332590	NM_009151	ENSMUSG00000048163	Selplg	CD162|Psgl-1|Psgl1|Selp1|Selpl	selectin, platelet (p-selectin) ligand	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-156042063-3	chr1	156041968	156042168	+	937.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172843, intron 2 of 6)	intron (NM_172843, intron 2 of 6)	1207.0	NM_022329	240832.0	Mm.253335	NM_022329	ENSMUSG00000050565	Tor1aip2	1110020D10Rik|15kDa|A130072J07|AA103493|AW060462|AW610675|C77739|Ifrg15|Lull1	torsin A interacting protein 2	protein-coding	2.11211468973886	2.49958149462903	2.29313506117313	2.93285593325716	1.70372622719874	2.7349789259358	1.36585261542213	2.46332661256778	-0.679824510490773	0.456293251012599	0.919264728457769
Merged-chr11-75486696-4	chr11	75486613	75486813	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138659)	promoter-TSS (NM_138659)	-64.0	NM_138659	192159.0	Mm.3757	NM_138659	ENSMUSG00000020850	Prpf8	AU019467|D11Bwg0410e|DBF3/PRP8|Prp8|Sfprp8l	pre-mRNA processing factor 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115246569-2	chr11	115246469	115246669	+	766.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001033393, exon 10 of 10)	3' UTR (NM_001033393, exon 10 of 10)	20674.0	NM_010350	14813.0	Mm.39090	NM_010350	ENSMUSG00000020734	Grin2c	GluN2C|NMDAR2C|NR2C	glutamate receptor, ionotropic, NMDA2C (epsilon 3)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-79160181-1	chr3	79160081	79160281	+	789.0	f0_balb.idr	Intergenic	Intergenic	-14306.0	NM_001099624	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	-0.75913952209841	-0.997742044469986	-1.00900354158192	-1.0117417821143	-0.874053535568008	-0.65714573069358	-1.00645418548077	-1.01140974433652	0.824769849949992	0.783096736991271	1
Merged-chr5-29288110-2	chr5	29288010	29288210	+	683.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_020295, intron 8 of 16)	B3|SINE|B2	90280.0	NM_020295	56873.0	Mm.41572	NM_020295	ENSMUSG00000010721	Lmbr1	1110048D14Rik|AU017641	limb region 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167648817-2	chr2	167648717	167648917	+	584.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145538, intron 2 of 5)	intron (NM_145538, intron 2 of 5)	12727.0	NM_145538	407243.0	Mm.4863	NM_145538	ENSMUSG00000090213	Tmem189	AI840826|Kua	transmembrane protein 189	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-67347664-1	chr5	67347564	67347764	+	781.5	f1_balb.idr	intron (NM_178651, intron 14 of 17)	B1_Mur1|SINE|Alu	40709.0	NM_001310629	109108.0	Mm.234455	NM_178651	ENSMUSG00000029221	Slc30a9	2310024J23Rik|AL024256|GAC63|HUEL|znT-9	solute carrier family 30 (zinc transporter), member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-79461090-2	chr14	79460990	79461190	+	734.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_018765, exon 10 of 10)	3' UTR (NM_018765, exon 10 of 10)	9255.0	NM_001034882	432879.0	Mm.308666	NM_001034882	ENSMUSG00000075502	Kbtbd6	EG432879|Gm5465|Zbtbd6	kelch repeat and BTB (POZ) domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3798603-2	chr4	3798503	3798703	+	744.400024	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER74A|LTR|ERVL	37052.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-30676843-2	chr5	30676743	30676943	+	692.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9957.0	NR_126074	12615.0	Mm.290563	NM_007681	ENSMUSG00000029177	Cenpa	Cenp-A	centromere protein A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-162670886-1	chr1	162670786	162670986	+	560.0	f1_c57bl6.idr	TTS (NM_001081290)	TTS (NM_001081290)	-12667.0	NM_001177581	100038657.0	Mm.416999	NM_001177581	ENSMUSG00000091060	Myocos	7420461P10Rik	myocilin opposite strand	protein-coding	-0.386244070006449	-0.371452032735701	-0.376279154454746	0.461034479355918	-0.385315589068455	-0.370366405410497	0.116673329337351	-0.379362312228568	-1.05302430194893	0.690417188322546	1
Merged-chr8-69866985-2	chr8	69866886	69867086	+	848.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_151668, intron 3 of 5)	intron (NR_151668, intron 3 of 5)	20406.0	NM_026818	68709.0	Mm.334584	NM_026818	ENSMUSG00000044006	Cilp2	1110031K21Rik|AA407300|CLIP-2	cartilage intermediate layer protein 2	protein-coding	-1.05877568042897	-1.03501312238488	-1.04817210678232	-1.05426068996071	-1.05810152525527	-1.03216151557194	-0.188696606725984	-1.05378786495764	3.16074139804981	0.330468818528456	1
Merged-chr3-68662586-1	chr3	68662486	68662686	+	664.0	f0_balb.idr	Intergenic	Intergenic	-28058.0	NM_001159424	16159.0	Mm.103783	NM_008351	ENSMUSG00000027776	Il12a	IL-12p35|Il-12a|Ll12a|p35	interleukin 12a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-55721502-4	chr17	55721426	55721626	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8890.0	NR_151542	72836.0	Mm.177073	NM_028370	ENSMUSG00000024174	Pot1b	2810458H16Rik	protection of telomeres 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-180921809-2	chr2	180921708	180921908	+	699.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173761)	promoter-TSS (NM_173761)	-872.0	NM_173761	228994.0	Mm.30205	NM_173761	ENSMUSG00000038848	Ythdf1	2210410K23Rik|8030473O16	YTH domain family 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-60820148-2	chr2	60820048	60820248	+	559.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001141932, intron 2 of 14)	intron (NM_001141932, intron 2 of 14)	61290.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55743146-4	chr19	55743062	55743262	+	895.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001331147, exon 3 of 14)	exon (NM_001331147, exon 3 of 14)	1352.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-106691956-4	chr13	106691849	106692049	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2c|LINE|L1	245009.0	NM_001360897	76582.0	Mm.132208	NM_029665	ENSMUSG00000042590	Ipo11	1700081H05Rik|2510001A17Rik|AI314624|AW555235|E330021B14Rik|Ranbp11	importin 11	protein-coding	3.56206567502554	2.93362617405721	2.96473749821056	3.54335620410996	3.31811635263145	3.71363237626529	3.87720460487085	4.18231178860677	0.778244791460523	0.15030038702371	0.602305959756336
Merged-chr1-136676508-4	chr1	136676414	136676614	+	856.1749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6882.0	NR_045324	100503460.0	Mm.30630	NR_045324	ENSMUSG00000097113	Gm19705	-	predicted gene, 19705	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-68456860-4	chr8	68456710	68456910	+	899.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172753, intron 4 of 9)	RMER16_Mm|LTR|ERVK	88351.0	NR_038181	73609.0	Mm.443247	NR_038181	ENSMUSG00000085197	1700125H03Rik	4930510D22Rik	RIKEN cDNA 1700125H03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-61549016-4	chr18	61548912	61549112	+	882.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6261.0	NM_001357499	93687.0	Mm.26908	NM_146087	ENSMUSG00000024576	Csnk1a1	2610208K14Rik|4632404G05Rik|5430427P18Rik|CK1a|Csnk1a	casein kinase 1, alpha 1	protein-coding	2.688360987497	3.43628277261148	2.80710140295891	4.0340360882206	3.00317258356418	3.76392802660768	2.83027997687368	2.09500169744467	-0.49656829212598	0.474322169218187	0.926577946129404
Merged-chr4-3483787-3	chr4	3483677	3483877	+	984.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPEY3-int|LTR|ERVK	-53313.0	NR_037306	100499523.0		NR_037306	ENSMUSG00000094253	Mir3471-2	mmu-mir-3471-2	microRNA 3471-2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-36714363-4	chr16	36714289	36714489	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285788, intron 3 of 7)	RLTR28|LTR|ERVL	20411.0	NM_001285791	106347.0	Mm.17807	NM_134109	ENSMUSG00000022900	Ildr1	AU041483|AU044638	immunoglobulin-like domain containing receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-37397638-8	chr10	37397536	37397736	+	981.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-258710.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16219654-1	chr7	16219554	16219754	+	740.0	f0_balb.idr	intron (NM_001285931, intron 1 of 16)	intron (NM_001285931, intron 1 of 16)	2339.0	NM_001285931	71723.0	Mm.75259	NM_027883	ENSMUSG00000006019	Dhx34	1200013B07Rik|1810012L18Rik|Ddx34|mKIAA0134	DEAH (Asp-Glu-Ala-His) box polypeptide 34	protein-coding	1.04042818472643	1.67710136893265	1.11714341680125	2.27159622899002	1.4933032085406	3.11534290743055	2.46845120197158	2.28459702017693	1.96771865854608	0.0667521370387948	0.387528454931352
Merged-chr11-75543327-2	chr11	75543227	75543427	+	556.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_173388, exon 3 of 14)	exon (NM_173388, exon 3 of 14)	-8102.0	NR_039553	100628624.0		NR_039553	ENSMUSG00000093100	Mir3971	mmu-mir-3971|mu-mir-3971	microRNA 3971	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-74712989-5	chr1	74712832	74713032	+	933.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024264)	promoter-TSS (NM_024264)	-603.0	NM_024264	104086.0	Mm.85083	NM_024264	ENSMUSG00000026170	Cyp27a1	1300013A03Rik|Cyp27	cytochrome P450, family 27, subfamily a, polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75452738-2	chr11	75452638	75452838	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_138950, exon 1 of 10)	exon (NM_138950, exon 1 of 10)	1979.0	NM_138950	192652.0	Mm.340378	NM_138950	ENSMUSG00000045374	Wdr81	BC054822|Gm883|mFLJ00182|nur5	WD repeat domain 81	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-25104897-3	chr9	25104833	25105033	+	774.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46848.0	NM_020586	80517.0	Mm.142843	NM_020586	ENSMUSG00000008429	Herpud2	5031400M07Rik|AB041580	HERPUD family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-53595730-2	chr10	53595630	53595830	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027830, intron 8 of 13)	intron (NM_027830, intron 8 of 13)	-1231.0	NM_025541	66403.0	Mm.272989	NM_025541	ENSMUSG00000019857	Asf1a	2310079C17Rik|C79052	anti-silencing function 1A histone chaperone	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166575112-4	chr2	166574984	166575184	+	787.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 32 of 39)	intron (NM_177782, intron 32 of 39)	10562.0	NR_152154	433503.0	Mm.491336	NR_152154		Gm29679	-	predicted gene, 29679	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-9857764-4	chr1	9857679	9857879	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037759, intron 1 of 16)	RMER13B|LTR|ERVK	9498.0	NM_001037759	170755.0	Mm.336410	NM_133220	ENSMUSG00000025915	Sgk3	2510015P22Rik|A330005P07Rik|Cisk|fy|fz	serum/glucocorticoid regulated kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-44989422-1	chr19	44989322	44989522	+	582.0	f1_c57bl6.idr	promoter-TSS (NM_011976)	promoter-TSS (NM_011976)	78.0	NM_011976	26456.0	Mm.34404	NM_011976	ENSMUSG00000025207	Sema4g	AI507908|AW554132	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G	protein-coding	0.473032611324897	0.0697939180677459	1.15749621093242	0.0564159408753049	0.482581831952484	0.0714790457078945	0.0639377732175431	0.0574424584233982	-2.18986357938691	0.30370619470835	1
Merged-chr12-54959771-4	chr12	54959676	54959876	+	988.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013815, intron 3 of 26)	L1MB4|LINE|L1	26560.0	NM_013815	217578.0	Mm.479583	NM_013815	ENSMUSG00000035021	Baz1a	Acf1|B930060C03|BC065123|Gtl5|Wcrf180|cbp146	bromodomain adjacent to zinc finger domain 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21798678-4	chr9	21798582	21798782	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145611)	promoter-TSS (NM_145611)	-136.0	NM_145611	235041.0	Mm.257371	NM_145611	ENSMUSG00000032194	Kank2	AI504612|Ankrd25|BC010245	KN motif and ankyrin repeat domains 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-82751195-4	chr6	82751097	82751297	+	972.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013820, intron 2 of 17)	intron (NM_013820, intron 2 of 17)	23257.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-61105785-4	chr18	61105703	61105903	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001037859, exon 2 of 22)	5' UTR (NM_001037859, exon 2 of 22)	231.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88138924-4	chr3	88138802	88139002	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3470.0	NM_001310593	17261.0	Mm.28184	NM_133665	ENSMUSG00000001419	Mef2d	C80750	myocyte enhancer factor 2D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129067756-4	chr4	129067664	129067864	+	784.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029219, intron 1 of 8)	intron (NM_029219, intron 1 of 8)	9493.0	NM_029219	75234.0	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-145047940-3	chr7	145047894	145048094	+	699.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-108069.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	1.1296047783686	1.62480620455203	0.491815185644605	0.482948523472524	1.1429021466941	0.505663777584371	0.494328442279027	0.849823703460307	-1.11097100601517	0.514355052365997	0.946798391882055
Merged-chr2-4504831-4	chr2	4504722	4504922	+	874.208374	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 5 of 23)	intron (NM_001177843, intron 5 of 23)	-54932.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-121937833-4	chr14	121937754	121937954	+	840.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026861, intron 4 of 8)	intron (NM_026861, intron 4 of 8)	-22080.0	NM_182806	110168.0	Mm.37405	NM_182806	ENSMUSG00000050350	Gpr18	-	G protein-coupled receptor 18	protein-coding	2.74310788788292	3.46244435816727	2.66124936392215	2.46526269093804	2.35871287854731	2.996622332005	2.79540754948287	2.34133061903908	-0.466244787171457	0.517718975875877	0.947641799425091
Merged-chr13-64129793-3	chr13	64129696	64129896	+	786.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001001321)	promoter-TSS (NM_001001321)	-466.0	NM_001001321	70484.0	Mm.133731	NM_001001321	ENSMUSG00000033114	Slc35d2	5730408I21Rik|SQV7L|UGTrel8|hfrc|mUGTrel8	solute carrier family 35, member D2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-46450990-4	chr4	46450889	46451089	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_130889)	promoter-TSS (NM_130889)	63.0	NM_130889	67628.0	Mm.263913	NM_130889	ENSMUSG00000028333	Anp32b	2410015B15Rik|PAL31|PHAPI2a|Ssp29	acidic (leucine-rich) nuclear phosphoprotein 32 family, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-135687125-2	chr3	135687025	135687225	+	910.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008689, intron 1 of 24)	intron (NM_008689, intron 1 of 24)	4422.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-85027221-2	chr8	85027121	85027321	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_026760, exon 1 of 3)	exon (NM_026760, exon 1 of 3)	388.0	NM_026760	68544.0	Mm.196005	NM_026760	ENSMUSG00000041203	Trir	1110002H14Rik|2310036O22Rik|AI854688	telomerase RNA component interacting RNase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-79742568-4	chr15	79742446	79742646	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001205345)	promoter-TSS (NM_001205345)	-10.0	NM_001205345	223697.0	Mm.202715	NM_194342	ENSMUSG00000042524	Sun2	B230369L08Rik|C030011B15|Unc84b	Sad1 and UNC84 domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-26456563-4	chr12	26456481	26456681	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021384)	promoter-TSS (NM_021384)	-129.0	NM_021384	58185.0	Mm.24045	NM_021384	ENSMUSG00000020641	Rsad2	2510004L01Rik|Vig1|cig5	radical S-adenosyl methionine domain containing 2	protein-coding	7.00766518382906	7.25976983176202	7.03395631129813	6.75879339137327	7.14132996220182	7.34744606517262	7.14521270658714	6.85202736022447	0.112389969896557	0.525684731537268	0.948445926163029
Merged-chr15-98566315-2	chr15	98566215	98566415	+	714.299988	f1_balb.idr|f1_c57bl6.idr	intron (NM_009833, intron 1 of 8)	intron (NM_009833, intron 1 of 8)	-1009.0	NR_028442	100048895.0	Mm.471074	NR_028442		9330020H09Rik	-	RIKEN cDNA 9330020H09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35082745-1	chr17	35082645	35082845	+	963.0	f1_c57bl6.idr	intron (NM_001163192, intron 3 of 5)	intron (NM_001163192, intron 3 of 5)	2850.0	NM_001163192	433099.0	Mm.328993	NM_001163192	ENSMUSG00000034923	Ly6g6f	CJ068215	lymphocyte antigen 6 complex, locus G6F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-115470024-4	chr6	115469916	115470116	+	921.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001308354, intron 6 of 7)	intron (NM_001308354, intron 6 of 7)	47950.0	NM_011146	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-53407032-2	chr5	53406932	53407132	+	605.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CAAAA)n|Simple_repeat|Simple_repeat	139926.0	NM_001145433	66278.0	Mm.27900	NM_001145433	ENSMUSG00000061461	Smim20	1110067B18Rik|1810013D10Rik|N28078	small integral membrane protein 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-81462864-1	chr16	81462764	81462964	+	698.333313	f0_balb.idr	intron (NM_001113208, intron 7 of 17)	L1Md_F2|LINE|L1	262167.0	NM_010954	17968.0	Mm.433941	NM_010954	ENSMUSG00000022762	Ncam2	Ncam-2|Ocam|RNCAM	neural cell adhesion molecule 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-100920868-4	chr3	100920764	100920964	+	865.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1629.0	NM_001165952	229644.0	Mm.189351	NM_194343	ENSMUSG00000033233	Trim45	4921530N01Rik	tripartite motif-containing 45	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-38950599-4	chr2	38950473	38950673	+	984.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172854, intron 4 of 7)	intron (NM_172854, intron 4 of 7)	18593.0	NM_172854	241327.0	Mm.103491	NM_172854	ENSMUSG00000046618	Olfml2a	4932431K08Rik|mFLJ00237	olfactomedin-like 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-152402510-4	chr3	152402398	152402598	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001287139, intron 1 of 13)	intron (NM_001287139, intron 1 of 13)	5814.0	NM_001287139	108946.0	Mm.379292	NM_198416	ENSMUSG00000039068	Zzz3	3110065C23Rik|6430567E01Rik|AA408566|AI481057|AW556059|R75514	zinc finger, ZZ domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-83828157-1	chr18	83828057	83828257	+	1000.0	f0_balb.idr	Intergenic	Intergenic	258405.0	NM_001081300	110796.0	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-21854946-4	chr14	21854982	21855182	+	856.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_176925, exon 3 of 3)	3' UTR (NM_176925, exon 3 of 3)	-6172.0	NM_026965	69156.0	Mm.11827	NM_026965	ENSMUSG00000021773	Comtd1	1810030M08Rik|MT773	catechol-O-methyltransferase domain containing 1	protein-coding	-1.8418762459921	-1.8125357239735	-1.82140854000656	-1.82869693527674	-1.56059678980999	-1.8106129477253	-1.81939992894326	-1.82739231600805	1.3620893379502	0.699511506488145	1
Merged-chr4-109258316-2	chr4	109258216	109258416	+	728.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-21959.0	NM_007943	13858.0	Mm.318250	NM_007943	ENSMUSG00000028552	Eps15	2410112D09Rik	epidermal growth factor receptor pathway substrate 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152602363-2	chr1	152602263	152602463	+	546.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346119, intron 2 of 17)	intron (NM_001346119, intron 2 of 17)	22854.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-39078687-3	chr15	39078560	39078760	+	601.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026778, intron 1 of 3)	intron (NM_026778, intron 1 of 3)	1728.0	NM_026778	68588.0	Mm.41556	NM_026778	ENSMUSG00000054196	Cthrc1	1110014B07Rik	collagen triple helix repeat containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-18392812-4	chr2	18392669	18392869	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007869)	promoter-TSS (NM_007869)	61.0	NM_001190817	13418.0	Mm.246674	NM_007869	ENSMUSG00000026740	Dnajc1	4733401K02Rik|AA960110|D230036H06Rik|Dnajl1|ERdj1|ERj1p|MTJ1	DnaJ heat shock protein family (Hsp40) member C1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75171737-4	chr11	75171628	75171828	+	982.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1473.0	NM_010430	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-80455730-4	chr18	80455627	80455827	+	845.19165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026295, intron 5 of 12)	intron (NM_026295, intron 5 of 12)	13940.0	NM_026295	67655.0	Mm.312893	NM_026295	ENSMUSG00000033323	Ctdp1	4930563P03Rik|AW553592	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1	protein-coding	2.87485348545346	2.2405090831047	3.63926396011103	3.11842256673612	3.39805172047164	3.34010940729577	2.6864102885665	2.94908090191772	0.0999518163108715	0.880146383156849	0.998431161219273
Merged-chr7-81843921-2	chr7	81843808	81844008	+	821.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4|LINE|L1	-14477.0	NM_146193	83962.0	Mm.439893	NM_146193	ENSMUSG00000025103	Btbd1	1190005H08Rik	BTB (POZ) domain containing 1	protein-coding	1.00061293218306	1.1334945961514	0.704222540135822	1.62318053655412	0.678557020669034	1.44206463164724	0.707201505917045	1.63361920319409	0.123268769205501	0.934413488203012	0.998431161219273
Merged-chr16-57549229-4	chr16	57549136	57549336	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177871)	promoter-TSS (NM_001177871)	-6.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71286927-3	chr17	71286794	71286994	+	832.305542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357337, intron 2 of 7)	intron (NM_001357337, intron 2 of 7)	24117.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-29171231-4	chr7	29171126	29171326	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_182694, exon 2 of 3)	exon (NM_182694, exon 2 of 3)	1016.0	NM_182694	243897.0	Mm.389886	NM_182694	ENSMUSG00000031493	Ggn	AI593290	gametogenetin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180428020-5	chr1	180427969	180428169	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55435.0	NM_001081227	381310.0	Mm.44791	NM_001081227	ENSMUSG00000053963	Stum	6330403A02Rik|Gm10001|R75555	mechanosensory transduction mediator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71011060-2	chr17	71010978	71011178	+	798.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A1|LTR|ERVL-MaLR	-8479.0	NM_010867	17929.0	Mm.4103	NM_010867	ENSMUSG00000024049	Myom1	D430047A17Rik	myomesin 1	protein-coding	2.11623106073769	1.80214189005869	2.89086995773917	1.996127194619	1.65395401466822	1.62078771111577	2.90954424024134	1.55208803970755	-0.445565309832558	0.655940531609087	0.988505467120973
Merged-chr1-24381697-2	chr1	24381560	24381760	+	865.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007733, intron 15 of 50)	L1MB2|LINE|L1	186457.0	NM_001290691	12839.0	Mm.154662	NM_007740	ENSMUSG00000026147	Col9a1	Col9a-1	collagen, type IX, alpha 1	protein-coding	-0.193837075826576	-0.31977481443612	-0.323820591181722	-0.0323703047939812	-0.189937841461306	-0.318861284202971	0.33915440122129	-0.32639085740504	1.17559937026114	0.61507909624673	1
Merged-chr7-35338049-1	chr7	35337949	35338149	+	904.5	f1_c57bl6.idr	intron (NM_027897, intron 1 of 14)	B2_Mm1t|SINE|B2	3812.0	NM_027897	52428.0	Mm.286600	NM_027897	ENSMUSG00000030494	Rhpn2	1300002E07Rik|AA536890|C85860|D7Ertd784e	rhophilin, Rho GTPase binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-78948327-4	chr3	78948197	78948397	+	662.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	196590.0	NM_001310536	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	-1.84354474832578	-1.81325489144778	-1.53416061964661	-1.82993901100912	-1.8414184563789	-1.81126990231468	-1.82034119297928	-1.82859217979378	-1.52252619601533	0.665276690233728	1
Merged-chr15-11765106-4	chr15	11765024	11765224	+	980.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	140550.0	NM_008728	18162.0	Mm.25259	NM_008728	ENSMUSG00000022206	Npr3	ANP-C|ANPR-C|EF-2|NPR-C|lgj|stri	natriuretic peptide receptor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99105659-4	chr15	99105623	99105823	+	878.724976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6239.0	NM_176835	72778.0	Mm.30544	NM_176835	ENSMUSG00000038009	Dnajc22	2810451A06Rik|AI506245	DnaJ heat shock protein family (Hsp40) member C22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-20193241-4	chr11	20193153	20193353	+	993.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8159.0	NM_008996	19324.0	Mm.271944	NM_008996	ENSMUSG00000020149	Rab1a	Gtbp|Rab-1|Rab1|Ypt1|mKIAA3012	RAB1A, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-16461954-2	chr5	16461854	16462054	+	818.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19A|LTR|ERVK	-91541.0	NM_001289460	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-31400452-6	chr10	31400343	31400543	+	719.922241	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359365, intron 1 of 6)	RLTR22_Mur|LTR|ERVK	13992.0	NM_011509	100041294.0	Mm.7821	NM_011509		Supt4b	Gm3258|Supt4h1b|Supt4h2	suppressor of Ty 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117306859-4	chr11	117306743	117306943	+	797.783325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113486, intron 3 of 11)	intron (NM_001113486, intron 3 of 11)	-24872.0	NM_017380	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-71867676-3	chr12	71867598	71867798	+	905.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026102, intron 1 of 25)	MTD|LTR|ERVL-MaLR	-21845.0	NM_001286452	208846.0	Mm.87417	NM_026102	ENSMUSG00000034574	Daam1	-	dishevelled associated activator of morphogenesis 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89861327-4	chr3	89861232	89861432	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29962.0	NM_172530	214547.0	Mm.225	NM_172530	ENSMUSG00000046280	She	9430022A14	src homology 2 domain-containing transforming protein E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-46893929-2	chr17	46893829	46894029	+	720.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3308.0	NM_178385	72726.0	Mm.33780	NM_178385	ENSMUSG00000036430	Tbcc	2810055C19Rik	tubulin-specific chaperone C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-87147583-4	chr12	87147480	87147680	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010363)	promoter-TSS (NM_010363)	-127.0	NM_001252556	14874.0	Mm.29652	NM_010363	ENSMUSG00000021033	Gstz1	MAAI	glutathione transferase zeta 1 (maleylacetoacetate isomerase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-30212076-2	chr11	30211976	30212176	+	592.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175836, intron 1 of 34)	B1_Mus2|SINE|Alu	7696.0	NM_175836	20742.0	Mm.123110	NM_009260	ENSMUSG00000020315	Sptbn1	9930031C03Rik|AL033301|SPTB2|Spnb-2|Spnb2|elf1|elf3|mKIAA4049	spectrin beta, non-erythrocytic 1	protein-coding	-2.05752322593321	-2.15521190974092	-2.16307242109104	-2.16952927915413	-2.17938029103484	-2.15350850414045	-2.16129297361887	-2.16837350464794	-0.683654500252594	0.846597994014493	1
Merged-chr3-28053292-4	chr3	28053202	28053402	+	809.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008875, intron 11 of 25)	L1MD2|LINE|L1	69131.0	NM_008875	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25673469-2	chr7	25673369	25673569	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001290497, exon 2 of 4)	exon (NM_001290497, exon 2 of 4)	1697.0	NM_001290497	320208.0	Mm.207484	NM_177102	ENSMUSG00000061702	Tmem91	A830041P22Rik|DSPC3|SynDIG3	transmembrane protein 91	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-153754844-3	chr1	153754738	153754938	+	935.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011882, exon 4 of 9)	exon (NM_011882, exon 4 of 9)	5412.0	NM_011882	24014.0	Mm.259254	NM_011882	ENSMUSG00000066800	Rnasel	E230029I04Rik	ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-19843581-3	chr13	19843489	19843689	+	954.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19332.0	NM_181754	353346.0	Mm.239268	NM_181754	ENSMUSG00000053101	Gpr141	PGR13	G protein-coupled receptor 141	protein-coding	2.43075207952453	3.77328532739632	3.57066254098219	3.9297897627431	2.73183649780408	4.19494767063139	3.59844482821472	3.94880223735218	0.27059036536646	0.651176129036409	0.986134028464175
Merged-chr11-75167509-4	chr11	75167371	75167571	+	865.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001098203, exon 2 of 2)	exon (NM_001098203, exon 2 of 2)	681.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	1.8957012725406	0.926430568673723	1.14504461047667	1.30134258697578	0.865538711131566	1.57697122781893	2.40942643936706	1.60541176781378	1.08821640498262	0.390377012187935	0.879597623215007
Merged-chr18-5591383-2	chr18	5591283	5591483	+	724.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011546)	promoter-TSS (NM_011546)	-477.0	NM_011546	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-148166674-2	chr4	148166574	148166774	+	664.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_176848)	TTS (NM_176848)	6006.0	NM_176848	230904.0	Mm.262287	NM_176848	ENSMUSG00000041556	Fbxo2	FBG1|FBX2|Fbs1|Fbs2|NFB42|Prpl4	F-box protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-111571893-2	chr9	111571797	111571997	+	786.5	f0_balb.idr|f1_balb.idr	intron (NM_016853, intron 10 of 10)	ORR1E|LTR|ERVL-MaLR	118451.0	NM_016853	20840.0	Mm.1414	NM_016853	ENSMUSG00000032502	Stac	-	src homology three (SH3) and cysteine rich domain	protein-coding	2.62138852642879	1.73143837061406	3.70258961437287	3.21218094101215	3.62722291277336	3.98532904265359	4.22529128431075	3.03107832099604	1.19269159187351	0.071754954568288	0.403554349176712
Merged-chr4-123635593-4	chr4	123635491	123635691	+	964.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199137, intron 1 of 92)	intron (NM_001199137, intron 1 of 92)	19171.0	NR_105824	102465214.0		NR_105824	ENSMUSG00000099005	Mir6398	Gm27657|mmu-mir-6398	microRNA 6398	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34605088-3	chr17	34604985	34605185	+	853.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163379)	promoter-TSS (NM_001163379)	-776.0	NM_001163379	55979.0	Mm.8684	NM_018862	ENSMUSG00000034254	Agpat1	1-AGP|1-AGPAT|AW047140	1-acylglycerol-3-phosphate O-acyltransferase 1 (lysophosphatidic acid acyltransferase, alpha)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28622493-4	chr17	28622407	28622607	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016795)	promoter-TSS (NM_016795)	14.0	NM_016795	20815.0	Mm.15252	NM_016795	ENSMUSG00000004865	Srpk1	AU017960	serine/arginine-rich protein specific kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-55555377-4	chr16	55555261	55555461	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60630.0	NR_039578	100628589.0		NR_039578	ENSMUSG00000093292	Mir5118	mmu-mir-5118|mu-mir-5118	microRNA 5118	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44241422-2	chr9	44241282	44241482	+	885.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360344, intron 2 of 6)	intron (NM_001360344, intron 2 of 6)	705.0	NM_001081369	270150.0	Mm.347681	NM_001081369	ENSMUSG00000070306	Ccdc153	-	coiled-coil domain containing 153	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128539985-2	chr10	128539885	128540085	+	736.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7759.0	NM_134003	103284.0	Mm.68289	NM_134003	ENSMUSG00000039810	Zc3h10	AI790326	zinc finger CCCH type containing 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-104287775-5	chr7	104287684	104287884	+	733.853333	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310602, intron 1 of 7)	intron (NM_001310602, intron 1 of 7)	322.0	NM_001310602	667823.0	Mm.482375	NM_001310602	ENSMUSG00000060441	Trim5	EG667823|Gm8833	tripartite motif-containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-27106051-2	chr14	27105951	27106151	+	764.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_134437, exon 13 of 13)	3' UTR (NM_134437, exon 13 of 13)	-37942.0	NM_001289686	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-18903841-4	chr2	18903701	18903901	+	960.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355149, intron 3 of 10)	intron (NM_001355149, intron 3 of 10)	94320.0	NM_008845	18718.0	Mm.313977	NM_008845	ENSMUSG00000026737	Pip4k2a	AW742916|Pip5k2a	phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-75045334-4	chr14	75045245	75045445	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198642, intron 9 of 13)	intron (NM_198642, intron 9 of 13)	29318.0	NM_198642	271221.0	Mm.320280	NM_198642	ENSMUSG00000034959	Rubcnl	5031414D18Rik|Gm744|Gm911|Kiaa0226l	RUN and cysteine rich domain containing beclin 1 interacting protein like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-17772764-2	chr12	17772664	17772864	+	941.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361645, intron 2 of 4)	intron (NM_001361645, intron 2 of 4)	81955.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-90598667-2	chr6	90598567	90598767	+	734.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356412, intron 22 of 22)	intron (NM_001356412, intron 22 of 22)	-6213.0	NM_027868	71699.0	Mm.272633	NM_027868	ENSMUSG00000030089	Slc41a3	1010001P06Rik|AI480742|SLC41A1-L2	solute carrier family 41, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30717078-2	chr2	30716978	30717178	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4132.0	NR_037272	100526499.0		NR_037272	ENSMUSG00000093091	Mir3089	mir-3089|mmu-mir-3089	microRNA 3089	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-111031644-4	chr10	111031547	111031747	+	965.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21581.0	NM_172554	320150.0	Mm.339281	NM_172554	ENSMUSG00000035798	Zdhhc17	A230053P19Rik|BB187739|D130071N24Rik|DHHC-17|Hip14	zinc finger, DHHC domain containing 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-86891721-3	chr8	86891621	86891821	+	651.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11A|LTR|ERVK	-6463.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127736343-2	chr10	127736243	127736443	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-3195.0	NM_198035	320080.0	Mm.27258	NM_198035	ENSMUSG00000044617	Zbtb39	7030401O21Rik|mKIAA0352	zinc finger and BTB domain containing 39	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-44012605-4	chr4	44012510	44012710	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290470)	promoter-TSS (NM_001290470)	-33.0	NM_016760	12757.0	Mm.298875	NM_016760	ENSMUSG00000028478	Clta	AV026556|Lca	clathrin, light polypeptide (Lca)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-31084314-1	chr7	31084214	31084414	+	700.5	f0_balb.idr	Intergenic	Intergenic	-7617.0	NM_008557	17178.0	Mm.263847	NM_008557	ENSMUSG00000057092	Fxyd3	Mat8	FXYD domain-containing ion transport regulator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-87000809-2	chr3	87000709	87000909	+	636.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1469.0	NM_007639	12479.0	Mm.1894	NM_007639	ENSMUSG00000028076	Cd1d1	AI747460|CD1.1|Cd1a|Cd1d|Ly-38	CD1d1 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-92862832-2	chr16	92862707	92862907	+	885.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-36733.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76559090-2	chr15	76558990	76559190	+	806.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17269.0	NM_172960	268822.0	Mm.181624	NM_172960	ENSMUSG00000022550	Adck5	A230108P17	aarF domain containing kinase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-16964113-4	chr6	16964035	16964235	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65694.0	NM_031198	21426.0	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-172503529-2	chr1	172503429	172503629	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178598, intron 1 of 4)	intron (NM_178598, intron 1 of 4)	3283.0	NM_178598	21346.0	Mm.271711	NM_178598	ENSMUSG00000026547	Tagln2	2700094C18Rik|SM22beta|Sm22B|Sm22a	transgelin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-23653667-2	chr17	23653527	23653727	+	832.875	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6879.0	NM_153784	212733.0	Mm.59997	NM_153784	ENSMUSG00000043782	Bicdl2	BICDR-2|Ccdc64b	BICD family like cargo adaptor 2	protein-coding	0.0284869187587253	-0.212579375982191	-0.216798703798004	0.29055724209104	0.321692094668396	-0.211626229059048	-0.215869373873269	-0.219477627089791	-0.374731525857785	0.877230456808	1
Merged-chr2-135658794-2	chr2	135658694	135658894	+	762.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013829)	promoter-TSS (NM_013829)	-753.0	NM_001355155	18798.0	Mm.38009	NM_013829	ENSMUSG00000039943	Plcb4	A930039J07Rik|AI854601|C230058B11Rik	phospholipase C, beta 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-94340995-4	chr8	94340901	94341101	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019415, intron 11 of 24)	intron (NM_019415, intron 11 of 24)	11793.0	NM_001205311	20497.0	Mm.25804	NM_019415	ENSMUSG00000031766	Slc12a3	AI035291|NCC|NCCT|TSC	solute carrier family 12, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-29548213-4	chr11	29548097	29548297	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024277)	promoter-TSS (NM_024277)	-157.0	NM_001033865	78294.0	Mm.180003	NM_024277	ENSMUSG00000020460	Rps27a	0610006J14Rik|Uba52|Ubb|Ubc	ribosomal protein S27A	protein-coding	4.3129755117177	4.65253590274133	5.40490568670119	3.50850512904466	4.20804386567521	4.87125314855224	4.3239806507248	4.00812878794685	-0.313817978035265	0.497977428005535	0.936897994490085
Merged-chr16-11036265-4	chr16	11036129	11036329	+	952.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27331.0	NR_040518	100043147.0	Mm.489001	NR_040518	ENSMUSG00000097056	Gm4262	-	predicted gene 4262	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-167308639-4	chr1	167308498	167308698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039483)	promoter-TSS (NM_001039483)	-72.0	NM_001039483	68944.0	Mm.330045	NM_026881	ENSMUSG00000052428	Tmco1	1190006A08Rik|4930403O06Rik|AA109065|AU022572|ESTM39	transmembrane and coiled-coil domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-136568972-4	chr5	136568863	136569063	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG-11653	-1473.0	NM_001291238	13047.0	Mm.320317	NM_009986	ENSMUSG00000029705	Cux1	CDP|Cutl1|Cux|Cux-1	cut-like homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-35063525-4	chr18	35063426	35063626	+	980.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-55386.0	NM_009818	12385.0	Mm.18962	NM_009818	ENSMUSG00000037815	Ctnna1	2010010M04Rik|AA517462|AI988031|Catna1	catenin (cadherin associated protein), alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-55970257-2	chr15	55970157	55970357	+	623.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63308.0	NM_016667	20649.0	Mm.309425	NM_016667	ENSMUSG00000060429	Sntb1	-	syntrophin, basic 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-27616372-4	chr15	27616301	27616501	+	943.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001013792, exon 4 of 7)	exon (NM_001013792, exon 4 of 7)	14292.0	NM_001013792	432940.0	Mm.309164	NM_001013792	ENSMUSG00000046034	Otulin	C79097|Fam105b|m3Sapc|m7-1Sapc	OTU deubiquitinase with linear linkage specificity	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-82829937-4	chr9	82829873	82830073	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_022986, exon 1 of 4)	5' UTR (NM_022986, exon 1 of 4)	167.0	NM_001168240	65099.0	Mm.41415	NM_022986	ENSMUSG00000032251	Irak1bp1	4921528N06Rik|AI851240|Aabp3|Aip70|Simpl	interleukin-1 receptor-associated kinase 1 binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76716052-2	chr15	76715952	76716152	+	861.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_145471)	TTS (NM_145471)	5411.0	NM_001358893	223664.0	Mm.277582	NM_145471	ENSMUSG00000033728	Lrrc14	E130306I01Rik|mKIAA0014	leucine rich repeat containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-110412164-2	chr9	110412064	110412264	+	609.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-3954.0	NM_001081043	104831.0	Mm.335477	NM_001081043	ENSMUSG00000036057	Ptpn23	AI462446|PTP-TD14	protein tyrosine phosphatase, non-receptor type 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78327849-2	chr15	78327749	78327949	+	887.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358854, intron 2 of 14)	intron (NM_001358854, intron 2 of 14)	1859.0	NM_007780	12983.0	Mm.235324	NM_007780	ENSMUSG00000071713	Csf2rb	AI848964|AIC2B|Bc|CDw131|Csf2rb1|Csfgmrb|Il3r|Il3rb|Il3rb1|Il5rb	colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-56315376-4	chr8	56315274	56315474	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008278, intron 4 of 6)	intron (NM_008278, intron 4 of 6)	20822.0	NM_008278	15446.0	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-39206136-4	chr6	39205998	39206198	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033430, intron 1 of 19)	CpG	675.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36471485-4	chr1	36471378	36471578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033570)	promoter-TSS (NM_033570)	-119.0	NM_033570	94220.0	Mm.422638	NM_033570	ENSMUSG00000037408	Cnnm4	5430430O18Rik|Acdp4	cyclin M4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-99993700-4	chr12	99993596	99993796	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164426, intron 2 of 2)	MIR|SINE|MIR	29197.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80083440-2	chr7	80083319	80083519	+	728.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_175433, intron 2 of 4)	B4|SINE|B4	-8162.0	NR_045695	100859962.0	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	-0.990219700220919	-1.06815903705124	-1.24279257567618	-1.25136460524387	-1.2591314987605	-1.06589762089026	-1.24043020744747	-1.24983021604965	-1.18324435021495	0.700911767692951	1
Merged-chr19-56455560-2	chr19	56455460	56455660	+	712.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-6077.0	NM_001164263	226245.0	Mm.156742	NM_172641	ENSMUSG00000035818	Plekhs1	9930023K05Rik	pleckstrin homology domain containing, family S member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-52463691-4	chr18	52463554	52463754	+	984.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2039.0	NM_026040	67222.0	Mm.100617	NM_026040	ENSMUSG00000024528	Srfbp1	2810036K01Rik|p49/STRAP	serum response factor binding protein 1	protein-coding	5.61743672957654	5.01531760120121	5.65115632357906	5.83668023550368	4.73746823852287	4.39294226649771	5.09563969458552	4.4178562541509	-1.02602505214932	0.00161221034404283	0.0286425958161292
Merged-chr3-38102672-4	chr3	38102554	38102754	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	105465.0	NR_040541	71342.0	Mm.410782	NR_040541	ENSMUSG00000106002	5430434I15Rik	-	RIKEN cDNA 5430434I15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-8983944-4	chr3	8983839	8984039	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	-19793.0	NM_001025261	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	4.9502396191864	4.5083656645669	6.02698202698527	4.65931812073146	5.51648566124277	5.59970879260509	5.79977543225559	4.63540369441312	0.312491449739096	0.416702682179734	0.897222495742637
Merged-chr6-117431553-7	chr6	117431415	117431615	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63720.0	NR_152214	100126203.0	Mm.217172	NR_152214		6820426E19Rik	Gm43983	RIKEN cDNA 6820426E19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-38042980-1	chr19	38042880	38043080	+	792.0	f1_balb.idr	intron (NM_001302140, intron 1 of 53)	intron (NM_001302140, intron 1 of 53)	597.0	NM_001099634	226101.0	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding	1.51653717391351	1.56923475505183	1.00525299917853	1.80010293812234	1.71893036458314	1.42620881562923	1.52923307309943	1.34658563489282	0.0149893439304716	0.989765790266982	0.998431161219273
Merged-chr9-37208224-4	chr9	37208131	37208331	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025464)	promoter-TSS (NM_025464)	8.0	NM_025464	66279.0	Mm.41451	NM_025464	ENSMUSG00000032121	Tmem218	1810021J13Rik|AV004931	transmembrane protein 218	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-3501880-4	chr5	3501774	3501974	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 5 of 7)	intron (NM_009873, intron 5 of 7)	-41959.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	5.77298986507897	6.2098777235286	4.71201408963566	6.05667587473921	6.27072387203427	6.12066842869536	6.26683907696742	6.0812200676842	0.435520228646993	0.124761924401598	0.553113157211875
Merged-chr10-130313743-2	chr10	130313643	130313843	+	826.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9109.0	NM_183264	67596.0	Mm.131264	NM_183264	ENSMUSG00000034833	Tespa1	5830405N20Rik|A430001F24Rik|AI450549	thymocyte expressed, positive selection associated 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-10541554-2	chr16	10541454	10541654	+	786.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_021428, intron 1 of 1)	intron (NM_021428, intron 1 of 1)	1500.0	NM_021428	58239.0	Mm.353006	NM_021428	ENSMUSG00000038055	Dexi	1810029J14Rik|AI836170|AW413143|D16Bwg0586e|Myle	dexamethasone-induced transcript	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-84697007-2	chr17	84696907	84697107	+	622.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347418, intron 10 of 12)	MIRc|SINE|MIR	13886.0	NM_026180	67470.0	Mm.26581	NM_026180	ENSMUSG00000024254	Abcg8	1300003C16Rik|AI114946|sterolin-2	ATP binding cassette subfamily G member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-41168775-3	chr9	41168667	41168867	+	729.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-10705.0	NM_176860	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-72985482-4	chr9	72985393	72985593	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001114328)	promoter-TSS (NM_001114328)	-11.0	NM_001286545	72278.0	Mm.268475	NM_028181	ENSMUSG00000034563	Ccpg1	1700030B06Rik|1810073J13Rik|9430028F23Rik|AI426686|AI875170|CPR8|D9Ertd392e	cell cycle progression 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-145757959-2	chr3	145757859	145758059	+	845.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026993)	promoter-TSS (NM_026993)	-733.0	NM_026993	69219.0	Mm.234247	NM_026993	ENSMUSG00000028194	Ddah1	2410006N07Rik|2510015N06Rik|AI987801|AW050362	dimethylarginine dimethylaminohydrolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-67081441-4	chr13	67081335	67081535	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001012449, intron 1 of 2)	intron (NM_001012449, intron 1 of 2)	110.0	NM_001012448	432769.0	Mm.458849	NM_001012325	ENSMUSG00000058883	Zfp708	Rslcan11	zinc finger protein 708	protein-coding	4.7682882100115	4.26942990745669	4.76911643395147	3.65790123159453	4.30832740908232	4.58729381982622	4.22452324660973	3.2949018848808	-0.343671833618837	0.455825393942269	0.919264728457769
Merged-chr15-41603498-4	chr15	41603386	41603586	+	967.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152565, intron 2 of 17)	intron (NR_152565, intron 2 of 17)	154383.0	NM_001358977	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5488431-4	chr19	5488341	5488541	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_153768)	promoter-TSS (NR_153768)	-62.0	NR_153769	71711.0	Mm.27697	NM_027877	ENSMUSG00000024906	Mus81	1200008A18Rik|AI182501|AW045863	MUS81 structure-specific endonuclease subunit	protein-coding	4.93180868767807	4.68017451238912	4.38479401744489	3.39630073723677	4.8845233930703	4.50299440787658	4.30512359523421	3.51470382777725	-0.09014454427937	0.847896032124034	0.998431161219273
Merged-chr4-148039691-2	chr4	148039591	148039791	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011929)	promoter-TSS (NM_011929)	614.0	NM_010840	17769.0	Mm.89959	NM_010840	ENSMUSG00000029009	Mthfr	AI323986	methylenetetrahydrofolate reductase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-32830890-2	chr19	32830790	32830990	+	764.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	73313.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-137577376-3	chr2	137577283	137577483	+	852.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-460863.0	NM_013822	16449.0	Mm.22398	NM_013822	ENSMUSG00000027276	Jag1	ABE2|Gsfabe2|Htu|Ozz|Ser-1	jagged 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-109970514-2	chr8	109970414	109970614	+	627.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8309.0	NM_028584	73608.0	Mm.86833	NM_028584	ENSMUSG00000001672	Marveld3	1810006A16Rik|AI642133|Marvd3|Mrvldc3	MARVEL (membrane-associating) domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-113617757-3	chr13	113617683	113617883	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_130796, exon 1 of 2)	exon (NM_130796, exon 1 of 2)	781.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-57534557-4	chr16	57534440	57534640	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 4 of 4)	intron (NM_001040397, intron 4 of 4)	-14702.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-84195925-2	chr12	84195825	84196025	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163501, intron 1 of 12)	intron (NM_001163501, intron 1 of 12)	-1910.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-32518016-2	chr9	32517916	32518116	+	861.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008026, intron 1 of 8)	intron (NM_008026, intron 1 of 8)	23436.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-137314132-5	chr5	137313979	137314179	+	811.200012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_031406)	TTS (NM_031406)	162.0	NM_011639	22051.0	Mm.27063	NM_011639	ENSMUSG00000023348	Trip6	-	thyroid hormone receptor interactor 6	protein-coding	1.09012116274143	0.747135430534291	0.54836437100506	0.964704513896357	1.10184526309826	0.752417421210256	0.550093450210666	0.970799178161415	0.0369422076226374	0.981144461657106	1
Merged-chr17-87405745-4	chr17	87405603	87405803	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029298, intron 5 of 6)	intron (NM_029298, intron 5 of 6)	22038.0	NM_029298	75467.0	Mm.50108	NM_029298	ENSMUSG00000036557	Stpg4	1700011E24Rik|GSE	sperm tail PG rich repeat containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-62374967-4	chr9	62374868	62375068	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009672, intron 5 of 6)	intron (NM_009672, intron 5 of 6)	33625.0	NM_009672	11737.0	Mm.269088	NM_009672	ENSMUSG00000032249	Anp32a	Anp32|I1PP2A|LANP|PHAP1|W91701|pp32	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-138007173-4	chr4	138007126	138007326	+	885.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355699, intron 1 of 32)	B2_Mm2|SINE|B2	9401.0	NM_001355700	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	4.90441392314197	3.69710469504571	3.97530376645082	3.55347029256547	3.9981114987218	4.45385421566885	4.65331470876538	3.88445046712997	0.153094521104073	0.74886164078047	0.998431161219273
Merged-chr1-160441360-4	chr1	160441248	160441448	+	941.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013862, intron 17 of 20)	intron (NM_013862, intron 17 of 20)	-89777.0	NM_001038621	29809.0	Mm.25833	NM_013862	ENSMUSG00000026721	Rabgap1l	5830411O09Rik|8430421H08Rik|9630005B12Rik|AW049894|HHL|Hh1|mKIAA0471	RAB GTPase activating protein 1-like	protein-coding	4.1718799328543	3.10770974110692	3.52049063264457	3.65145508785468	3.68638450005568	2.99114792870481	4.09425584482819	3.73783445343491	0.0107753757976314	0.984018943244334	0.998431161219273
Merged-chr9-120115717-2	chr9	120115631	120115831	+	893.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_144793, intron 1 of 6)	intron (NM_144793, intron 1 of 6)	5332.0	NM_144793	208638.0	Mm.236656	NM_144793	ENSMUSG00000032519	Slc25a38	AV019094|BC010801|appoptosin	solute carrier family 25, member 38	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-73971275-3	chr13	73971145	73971345	+	828.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153830, intron 2 of 9)	intron (NR_153830, intron 2 of 9)	7394.0	NM_027704	71164.0	Mm.66995	NM_027704	ENSMUSG00000069189	Zdhhc11	4933421L13Rik|DHHC-11|Zdhhc20	zinc finger, DHHC domain containing 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64226963-2	chr5	64226863	64227063	+	761.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019636, intron 2 of 19)	(TC)n|Simple_repeat|Simple_repeat	-3394.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-130728238-4	chr2	130728117	130728317	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029432, intron 28 of 36)	intron (NM_029432, intron 28 of 36)	-30698.0	NM_001081162	269356.0	Mm.441391	NM_001081162	ENSMUSG00000074796	Slc4a11	AI503023|BTR1|NaBC1	solute carrier family 4, sodium bicarbonate transporter-like, member 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-118716523-4	chr10	118716418	118716618	+	886.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	152385.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88454121-2	chr3	88454021	88454221	+	698.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_013658, intron 2 of 14)	intron (NM_013658, intron 2 of 14)	1640.0	NM_013658	20351.0	Mm.439752	NM_013658	ENSMUSG00000028064	Sema4a	AI132332|SemB|Semab	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-132932207-4	chr7	132932121	132932321	+	878.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207302, intron 1 of 9)	intron (NM_207302, intron 1 of 9)	1079.0	NM_001362198	360216.0	Mm.389984	NM_207302	ENSMUSG00000030967	Zranb1	9330160G10Rik|D7Wsu87e|Gm1956|Trabid	zinc finger, RAN-binding domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-83807771-3	chr9	83807670	83807870	+	753.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1465.0	NM_148941	83603.0	Mm.83949	NM_148941	ENSMUSG00000032262	Elovl4	-	elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-112961419-2	chr12	112961319	112961519	+	626.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028193, intron 16 of 17)	intron (NM_028193, intron 16 of 17)	-15063.0	NM_001145900	399566.0	Mm.440140	NM_201646	ENSMUSG00000002803	Btbd6	-	BTB (POZ) domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100721405-4	chr11	100721281	100721481	+	869.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305003, intron 1 of 5)	intron (NM_001305003, intron 1 of 5)	7531.0	NM_029307	75482.0	Mm.46175	NM_029307	ENSMUSG00000017832	Hspb9	1700007H20Rik	heat shock protein, alpha-crystallin-related, B9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-81630749-2	chr17	81630649	81630849	+	794.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 2 of 8)	intron (NR_104580, intron 2 of 8)	107638.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90579684-4	chr2	90579592	90579792	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	CpG	955.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106154169-2	chr11	106154069	106154269	+	967.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_011947, exon 16 of 16)	exon (NM_011947, exon 16 of 16)	5758.0	NM_001356459	67803.0	Mm.21687	NM_172397	ENSMUSG00000040699	Limd2	0610025L06Rik|AI413966	LIM domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5835973-2	chr19	5835873	5836073	+	627.75	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_131212, exon 1 of 1)	non-coding (NR_131212, exon 1 of 1)	9505.0	NR_131212	66961.0	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-35108941-1	chr2	35108841	35109041	+	810.0	f0_balb.idr	promoter-TSS (NM_012018)	promoter-TSS (NM_012018)	-551.0	NM_012018	26920.0	Mm.231332	NM_012018	ENSMUSG00000057110	Cntrl	6720467O09Rik|AA968343|Cep1|Cep110|IB3/5|Ma2a8|b2b1468.1Clo|b2b1468Clo	centriolin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-57983610-1	chr1	57983510	57983710	+	559.0	f0_balb.idr	Intergenic	Lx6|LINE|L1	-1730.0	NM_001177867	68549.0	Mm.32800	NM_199007	ENSMUSG00000026039	Sgo2a	1110007N04Rik|4932411A20Rik|5730576N04Rik|AU018846|AV008062|D1Ertd8e|Sgol2|Sgol2a|Tripin	shugoshin 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-79294006-2	chr11	79293906	79294106	+	752.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39311.0	NM_019653	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-150891680-4	chr5	150891530	150891730	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60977.0	NM_013823	16591.0	Mm.6500	NM_013823	ENSMUSG00000058488	Kl	alpha-kl	klotho	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-27182870-4	chr3	27182747	27182947	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178772)	promoter-TSS (NM_178772)	-157.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-25476045-2	chr14	25475945	25476145	+	553.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	16860.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-13372399-2	chr18	13372299	13372499	+	729.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	365409.0	NM_153087	225192.0	Mm.207073	NM_153087	ENSMUSG00000037346	Hrh4	AXOR35|BG26|GPCR105|GPRv53|H4|H4R|HH4R	histamine receptor H4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32138041-4	chr2	32137935	32138135	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-13113.0	NM_172661	227723.0	Mm.25504	NM_172661	ENSMUSG00000039262	Prrc2b	5830434P21Rik|AI173903|Bat2l|Bat2l1|D430039P21|mKIAA0515	proline-rich coiled-coil 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-20824762-4	chr14	20824656	20824856	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB2|LINE|L1	-11906.0	NM_008873	18792.0	Mm.4183	NM_008873	ENSMUSG00000021822	Plau	u-PA|uPA	plasminogen activator, urokinase	protein-coding	4.13996039205581	3.89458296413751	3.6056198843616	3.93216458972734	3.98664191096182	3.92223786142256	3.87013079627702	3.82393144534184	-0.0129202515057227	0.97717529127558	0.998431161219273
Merged-chr1-182271934-1	chr1	182271834	182272034	+	819.0	f0_balb.idr	Intergenic	Intergenic	10261.0	NM_001360783	13244.0	Mm.29648	NM_007853	ENSMUSG00000038633	Degs1	AA536663|Degs|Des1|Mdes	delta(4)-desaturase, sphingolipid 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-82776727-1	chr8	82776627	82776827	+	591.0	f1_balb.idr	Intergenic	Intergenic	-2601.0	NM_145600	30932.0	Mm.269248	NM_145600	ENSMUSG00000031711	Zfp330	BC008086|Noa36|Znf330	zinc finger protein 330	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-83867115-3	chr3	83866981	83867181	+	880.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13D3A|LTR|ERVK	-25473.0	NM_011905	24088.0	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19507440-7	chr7	19507323	19507523	+	840.261902	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177692, exon 2 of 2)	exon (NM_177692, exon 2 of 2)	908.0	NM_177692	232946.0	Mm.64557	NM_177692	ENSMUSG00000057667	Bloc1s3	BC043666|Blos3|E230011O18|rp	biogenesis of lysosomal organelles complex-1, subunit 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32737266-4	chr2	32737153	32737353	+	965.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027529, intron 2 of 2)	intron (NM_027529, intron 2 of 2)	3763.0	NM_027529	70730.0	Mm.401360	NM_027529	ENSMUSG00000009551	6330409D20Rik	AA517851	RIKEN cDNA 6330409D20 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-55512263-4	chr9	55512165	55512365	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145615)	promoter-TSS (NM_145615)	-22.0	NM_145615	110842.0	Mm.290853	NM_145615	ENSMUSG00000032314	Etfa	2010200I21Rik|D9Ertd394e	electron transferring flavoprotein, alpha polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-48874669-4	chr11	48874584	48874784	+	921.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3264.0	NM_008326	15944.0	Mm.29938	NM_008326	ENSMUSG00000046879	Irgm1	Ifggd3|Ifi1|Iigp3|Iipg3|Irgm	immunity-related GTPase family M member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-88510024-4	chr1	88509919	88510119	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008132)	promoter-TSS (NM_008132)	47.0	NM_008132	14659.0	Mm.5187	NM_008132	ENSMUSG00000062310	Glrp1	GRP-1	glutamine repeat protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-149016021-3	chr5	149015894	149016094	+	723.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9032.0	NR_040429	100503307.0	Mm.188008	NR_040429	ENSMUSG00000086610	Gm15408	-	predicted gene 15408	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-92162659-2	chr10	92162553	92162753	+	596.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_028262, intron 2 of 12)	intron (NR_028262, intron 2 of 12)	2525.0	NR_028262	110333.0	Mm.429764	NR_028262	ENSMUSG00000112117	Rmst	100041799|AI853140|C230053E11Rik|D930049J19Rik|Dmt2|Gm3515|M2|Ncrms	rhabdomyosarcoma 2 associated transcript (non-coding RNA)	ncRNA	1.13722726722859	2.30122775973769	2.21363217750991	1.19515158282315	0.923722290091271	1.98482460179066	2.23329789604297	0.957035372331967	-0.422276292710455	0.734459741235	0.998431161219273
Merged-chr18-62045690-4	chr18	62045612	62045812	+	952.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A|LTR|ERVL-MaLR	92637.0	NM_172628	225608.0	Mm.262320	NM_172628	ENSMUSG00000045629	Sh3tc2	D430044G18Rik	SH3 domain and tetratricopeptide repeats 2	protein-coding	3.28549068094022	3.79070966533358	2.81586150312121	3.18885900272925	1.89221081703822	3.05206993257757	2.71849019269073	1.77098669973321	-1.53322279265472	0.0361502058512591	0.269620909533821
Merged-chr8-24440557-2	chr8	24440457	24440657	+	711.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1611.0	NM_026931	69068.0	Mm.25775	NM_026931	ENSMUSG00000056313	Tcim	1110065B09Rik|1810011O10Rik|AW121743|AW321058	transcriptional and immune response regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99483033-2	chr7	99482933	99483133	+	616.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_002172)	promoter-TSS (NR_002172)	-101.0	NR_002172	449630.0	Mm.454449	NR_002172	ENSMUSG00000065822	Snord15a	EG449630|Gm5774|RNU15A|Rnu15-a|U15A	small nucleolar RNA, C/D box 15A	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-36547480-4	chr13	36547379	36547579	+	975.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	186998.0	NM_153529	68404.0	Mm.232930	NM_153529	ENSMUSG00000039114	Nrn1	0710008J23Rik|Cpg15|Nrn	neuritin 1	protein-coding	3.49006549805511	4.25582232590532	4.06131352572804	4.27445023668225	4.23665820651144	3.35887941026727	4.15203469475517	3.90891594536427	-0.118178927621307	0.800429775347231	0.998431161219273
Merged-chr5-136962758-4	chr5	136962667	136962867	+	978.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025562, intron 1 of 4)	intron (NM_025562, intron 1 of 4)	690.0	NM_025562	66437.0	Mm.25849	NM_025562	ENSMUSG00000019054	Fis1	2010003O14Rik|Ttc11	fission, mitochondrial 1	protein-coding	-1.52696403314699	-1.49523967873556	-1.5048333853602	-1.51271394162622	-1.52473704212565	-1.49316068248889	-1.50266158046844	-1.06847079017215	2.01069003169785	0.564432837776867	1
Merged-chr11-80076191-2	chr11	80076091	80076291	+	637.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_018776, intron 1 of 7)	B1_Mur4|SINE|Alu	4800.0	NM_001277106	54394.0	Mm.272093	NM_018776	ENSMUSG00000017561	Crlf3	BB164954|Creme9|Cytor4	cytokine receptor-like factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32352909-2	chr2	32352809	32353009	+	979.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010065, intron 1 of 20)	CpG	420.0	NM_001301737	13429.0	Mm.44736	NM_010065	ENSMUSG00000026825	Dnm1	AI838169|Dnm|Ftfl|mKIAA4093	dynamin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-91697163-4	chr13	91696997	91697197	+	944.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360776, intron 15 of 15)	intron (NM_001360776, intron 15 of 15)	-44424.0	NM_028790	74156.0	Mm.275963	NM_028790	ENSMUSG00000021620	Acot12	1300004O04Rik|4930449F15Rik|AV027244|Cach|mCACH-1	acyl-CoA thioesterase 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-21167551-4	chr13	21167426	21167626	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12405.0	NM_009054	19720.0	Mm.314056	NM_009054	ENSMUSG00000021326	Trim27	AW538890|Gm19403|Rfp	tripartite motif-containing 27	protein-coding	3.33904030728565	3.21594922611807	3.10880651368099	2.91631582897606	3.29866206124283	3.43468606387826	2.90599231062779	3.76885801624619	0.389263469538065	0.503255552081299	0.939787919021146
Merged-chr11-97996596-2	chr11	97996496	97996696	+	563.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_152188)	promoter-TSS (NR_152188)	-423.0	NR_152188	217151.0	Mm.277896	NM_207231	ENSMUSG00000038352	Arl5c	Arl12|BC065791	ADP-ribosylation factor-like 5C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-87243854-3	chr3	87243785	87243985	+	739.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19639.0	NM_030707	80891.0	Mm.45173	NM_030707	ENSMUSG00000015852	Fcrls	2810439C17Rik|9330158F12|FcRH2sc|Fcrh2|IFGP2|IgSR|MMAN-g|Msr2|moFcRH2sc	Fc receptor-like S, scavenger receptor	protein-coding	3.60449120523124	2.6601338037711	1.80581772034104	3.03387854768607	2.22709171734918	3.77394955865312	2.05905654799147	3.42438864843536	0.231234972053477	0.77136989788093	0.998431161219273
Merged-chr1-144273187-2	chr1	144273087	144273287	+	937.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24083.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-111151566-2	chr8	111151466	111151666	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-6068.0	NR_040364	434350.0	Mm.442061	NR_040363		9430091E24Rik	-	RIKEN cDNA 9430091E24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-44272890-3	chr13	44272789	44272989	+	929.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	BLACKJACK|DNA|hAT-Blackjack	-56402.0	NR_045088	100503592.0	Mm.184925	NR_045088	ENSMUSG00000113186	A330076C08Rik	-	RIKEN cDNA A330076C08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-79380663-4	chr15	79380576	79380776	+	881.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172608, intron 1 of 8)	intron (NM_172608, intron 1 of 8)	-5376.0	NR_035464	100316695.0		NR_035464	ENSMUSG00000088901	Mir1943	mir-1943|mmu-mir-1943	microRNA 1943	ncRNA	4.93267578041278	5.49769888481588	5.02892338400499	5.13080121629661	4.67868707687518	4.69417101824344	3.59578383739356	4.0580719265355	-1.0112750520361	0.00700846108892799	0.0851853138159102
Merged-chr17-81668632-2	chr17	81668518	81668718	+	591.5	f0_c57.idr|f1_balb.idr	intron (NR_104580, intron 1 of 8)	intron (NR_104580, intron 1 of 8)	69769.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95952028-2	chr3	95951928	95952128	+	598.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22771.0	NM_023210	66471.0	Mm.218657	NM_023210	ENSMUSG00000015749	Anp32e	2810018A15Rik|AI047746|AI326868|CPD1|LANP-L|LANPL|mLANP-L	acidic (leucine-rich) nuclear phosphoprotein 32 family, member E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70060539-4	chr14	70060450	70060650	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_028560)	TTS (NM_028560)	-16895.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-112325423-4	chr5	112325313	112325513	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018783)	promoter-TSS (NM_018783)	-956.0	NM_018783	54723.0	Mm.172947	NM_018783	ENSMUSG00000029345	Tfip11	2810002G02Rik|AF097181|AW046167|Srr1|TIP33|Tip39	tuftelin interacting protein 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-5335138-2	chr9	5335038	5335238	+	606.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007609, intron 7 of 8)	ORR1A4|LTR|ERVL-MaLR	-10338.0	NM_009808	12364.0	Mm.42163	NM_009808	ENSMUSG00000025887	Casp12	-	caspase 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-78458899-2	chr10	78458799	78458999	+	771.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172134, intron 1 of 10)	intron (NM_172134, intron 1 of 10)	6049.0	NM_172134	216134.0	Mm.206159	NM_172134	ENSMUSG00000032788	Pdxk	2310036D04Rik|AA119688|C77999	pyridoxal (pyridoxine, vitamin B6) kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-120912320-2	chr14	120912220	120912420	+	774.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023579, intron 1 of 25)	intron (NM_023579, intron 1 of 25)	1126.0	NM_023579	70572.0	Mm.221452	NM_023579	ENSMUSG00000030662	Ipo5	1110011C18Rik|5730478E03Rik|AA409333|C76941|IMB3|Kpnb3|Ranbp5|imp5	importin 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-61065744-3	chr18	61065667	61065867	+	733.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001146268, exon 7 of 23)	exon (NM_001146268, exon 7 of 23)	20617.0	NM_008809	18596.0	Mm.4146	NM_008809	ENSMUSG00000024620	Pdgfrb	AI528809|CD140b|PDGFR-1|Pdgfr	platelet derived growth factor receptor, beta polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118879719-2	chr9	118879610	118879810	+	935.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 12 of 13)	ORR1D1|LTR|ERVL-MaLR	-46826.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	-1.8418762459921	-1.8125357239735	-1.82140854000656	-1.82869693527674	-1.56059678980999	-1.8106129477253	-1.81939992894326	-1.82739231600805	1.3620893379502	0.699511506488145	1
Merged-chr2-26559098-1	chr2	26558998	26559198	+	550.0	f0_balb.idr	Intergenic	Intergenic	-21958.0	NM_178444	353156.0	Mm.268933	NM_178444	ENSMUSG00000026921	Egfl7	VE-statin|Zneu1	EGF-like domain 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-152261502-4	chr3	152261414	152261614	+	886.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199465, intron 1 of 12)	intron (NM_199465, intron 1 of 12)	4281.0	NM_001357206	68810.0	Mm.200188	NM_199465	ENSMUSG00000039103	Nexn	1110046H09Rik|AA553326|NELIN	nexilin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-113683452-3	chr11	113683352	113683552	+	927.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361593)	promoter-TSS (NM_001361593)	699.0	NM_138598	28081.0	Mm.351688	NM_138598	ENSMUSG00000041629	Fam104a	D11Wsu99e	family with sequence similarity 104, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-7858573-3	chr14	7858466	7858666	+	937.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081427, intron 1 of 45)	intron (NM_001081427, intron 1 of 45)	40609.0	NM_134080	286940.0	Mm.489652	NM_134080	ENSMUSG00000025278	Flnb	AL024016|Fln-b	filamin, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-78150061-2	chr10	78149961	78150161	+	690.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	19707.0	NM_138601	28295.0	Mm.268691	NM_138601	ENSMUSG00000053329	D10Jhu81e	C21orf33|ES1	DNA segment, Chr 10, Johns Hopkins University 81 expressed	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-89327161-2	chr6	89327061	89327261	+	620.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008881, intron 23 of 31)	intron (NM_008881, intron 23 of 31)	35452.0	NM_008881	18844.0	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-90356332-2	chr16	90356232	90356432	+	777.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30065.0	NM_015755	26559.0	Mm.125874	NM_015755	ENSMUSG00000053414	Hunk	Bstk1|Mak-v	hormonally upregulated Neu-associated kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-144872184-3	chr3	144872086	144872286	+	995.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22884.0	NM_139148	229927.0	Mm.290600	NM_139148	ENSMUSG00000037033	Clca3b	Clca4	chloride channel accessory 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-108934046-3	chr12	108933928	108934128	+	637.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177602, intron 2 of 6)	intron (NM_177602, intron 2 of 6)	39756.0	NM_177602	212198.0	Mm.342082	NM_177602	ENSMUSG00000040877	Wdr25	B930090D16Rik	WD repeat domain 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-105409293-4	chr5	105409185	105409385	+	919.408325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-6490.0	NM_001033550	433926.0	Mm.439781	NM_001033550	ENSMUSG00000070639	Lrrc8b	2210408K08Rik|R75581|Ta-lrrp|mKIAA0231	leucine rich repeat containing 8 family, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24488871-4	chr17	24488767	24488967	+	700.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027937)	promoter-TSS (NM_027937)	84.0	NM_027937	268932.0	Mm.70989	NM_027937	ENSMUSG00000033597	Caskin1	3300002N10Rik|C130061I24|C630036E02Rik|mKIAA1306	CASK interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-22116274-4	chr16	22116172	22116372	+	955.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183029, intron 2 of 15)	RMER1C|Other|Other	47027.0	NM_183029	319765.0	Mm.489442	NM_183029	ENSMUSG00000033581	Igf2bp2	C330012H03Rik|IMP-2|Imp2|Neilsen	insulin-like growth factor 2 mRNA binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-82868806-2	chr18	82868706	82868906	+	615.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12909.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-16222546-2	chr9	16222446	16222646	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080814, intron 2 of 24)	intron (NM_001080814, intron 2 of 24)	155685.0	NM_001080814	270120.0	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT atypical cadherin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-61484748-2	chr18	61484661	61484861	+	831.416626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045419)	promoter-TSS (NR_045419)	-154.0	NR_045419	442846.0	Mm.417648	NR_045419		A530050N04Rik	-	RIKEN cDNA A530050N04 gene	ncRNA	-1.50811478453619	-0.99851579554048	-1.48484165847197	-1.49312904261012	-1.50577282675516	-1.47256636097272	-1.48255773576353	-1.49164560481169	-2.24133836997777	0.518237887813808	1
Merged-chr5-138188518-1	chr5	138188418	138188618	+	628.0	f1_balb.idr	intron (NM_178612, intron 1 of 5)	intron (NM_178612, intron 1 of 5)	983.0	NM_178612	66455.0	Mm.24592	NM_178612	ENSMUSG00000036968	Cnpy4	2610019P18Rik	canopy FGF signaling regulator 4	protein-coding	0.696199874944926	0.193706019180911	0.185756354465579	0.17956966868206	0.707351724647795	0.195487626535712	0.187516285228169	1.21746781597131	1.85667698207727	0.364946621309048	1
Merged-chr17-27957149-2	chr17	27957060	27957260	+	560.5	f0_balb.idr|f1_c57bl6.idr	intron (NM_181413, intron 1 of 24)	intron (NM_181413, intron 1 of 24)	47854.0	NM_181413	224650.0	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-79160462-2	chr8	79160362	79160562	+	813.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001294279, intron 8 of 14)	intron (NM_001294279, intron 8 of 14)	88121.0	NM_026315	67687.0	Mm.178707	NM_026315	ENSMUSG00000031682	1700011L22Rik	-	RIKEN cDNA 1700011L22 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-5010993-2	chr2	5010893	5011093	+	649.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027290, intron 1 of 19)	intron (NM_027290, intron 1 of 19)	1351.0	NM_001305259	70024.0	Mm.23828	NM_027290	ENSMUSG00000026669	Mcm10	2410041F14Rik|AU018508|C330019M07Rik|C79164	minichromosome maintenance 10 replication initiation factor	protein-coding	-1.32440223303897	-1.29339468673833	-0.717877708899544	-1.31276353204239	-1.32392690786997	-1.29109028300231	-1.30162128075409	-1.31119997543009	-2.49510383040271	0.470258445164311	1
Merged-chr4-133878070-2	chr4	133877970	133878170	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009097, intron 2 of 21)	intron (NM_009097, intron 2 of 21)	-3339.0	NM_001285506	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-39639005-4	chr18	39638888	39639088	+	933.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA4A|LINE|L1	-134509.0	NM_011033	18459.0	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-53457212-3	chr11	53457127	53457327	+	824.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290789)	promoter-TSS (NM_001290789)	22.0	NM_027917	71774.0	Mm.274370	NM_027917	ENSMUSG00000018387	Shroom1	Apx|Shrm1	shroom family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-98572982-4	chr10	98572859	98573059	+	960.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR78|LTR|ERV1	-221092.0	NR_045179	667438.0	Mm.414522	NR_045179	ENSMUSG00000112896	Gm8633	EG667438	predicted gene 8633	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-21080542-2	chr1	21080445	21080645	+	760.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-1320.0	NM_177409	170829.0	Mm.185680	NM_177409	ENSMUSG00000041779	Tram2	C330003D03Rik	translocating chain-associating membrane protein 2	protein-coding	1.17610489226533	2.70747049836192	2.70633686865961	1.89881658529525	1.8100797752084	2.62056831329155	3.23954628087696	1.50627439965284	0.435555803607892	0.660102671572552	0.990071487648239
Merged-chr6-89420879-2	chr6	89420779	89420979	+	598.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_001167736, intron 4 of 6)	intron (NM_001167736, intron 4 of 6)	-58266.0	NM_008881	18844.0	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-19571367-1	chr4	19571267	19571467	+	570.0	f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	-1259.0	NM_001356481	70568.0	Mm.38390	NM_027769	ENSMUSG00000028228	Cpne3	5430428M23Rik|5730450C07Rik|C85108|CPN3	copine III	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-44292613-5	chr13	44292513	44292713	+	795.133362	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-76126.0	NR_045088	100503592.0	Mm.184925	NR_045088	ENSMUSG00000113186	A330076C08Rik	-	RIKEN cDNA A330076C08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-101099725-2	chr9	101099625	101099825	+	769.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001100451, intron 1 of 1)	intron (NM_001100451, intron 1 of 1)	24963.0	NM_001100451	77853.0	Mm.326206	NM_001100451	ENSMUSG00000066415	Msl2	E130103E02Rik|Msl2l1|Rnf184	MSL complex subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152525703-2	chr1	152525603	152525803	+	715.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 15 of 17)	intron (NM_016846, intron 15 of 17)	99514.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41647163-2	chr19	41647057	41647257	+	751.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_015748, intron 11 of 36)	intron (NM_015748, intron 11 of 36)	58506.0	NR_106166	102465884.0		NR_106166	ENSMUSG00000098286	Mir8091	Gm27575|mmu-mir-8091	microRNA 8091	ncRNA	2.38122441990792	2.13903247183313	2.35356117397517	2.68990417215867	2.07006396136529	2.45186718018641	3.02191883020698	1.85629408131384	0.0593518744856992	0.942925857986015	0.998431161219273
Merged-chr6-117882263-6	chr6	117882101	117882301	+	844.89447	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER68|LTR|ERVL	-18139.0	NM_001166432	98758.0	Mm.422979	NM_133834	ENSMUSG00000042079	Hnrnpf	4833420I20Rik|AA407306|Hnrpf	heterogeneous nuclear ribonucleoprotein F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-24961504-1	chr6	24961404	24961604	+	643.0	f0_balb.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	-5379.0	NM_177013	319832.0	Mm.127446	NM_177013	ENSMUSG00000048022	Tmem229a	6332401O19Rik	transmembrane protein 229A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-45926660-3	chr1	45926527	45926727	+	808.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1033.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-93956876-4	chr2	93956767	93956967	+	695.700928	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001145034, exon 1 of 1)	5' UTR (NM_001145034, exon 1 of 1)	233.0	NM_001145034	620695.0	Mm.482106	NM_001145034	ENSMUSG00000087006	Gm13889	Ag2	predicted gene 13889	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-12830224-1	chr19	12830124	12830324	+	615.0	f0_balb.idr	intron (NM_134152, intron 7 of 8)	intron (NM_134152, intron 7 of 8)	-31553.0	NM_146702	258697.0	Mm.223132	NM_146702	ENSMUSG00000046272	Olfr1444	MOR202-4	olfactory receptor 1444	protein-coding	0.720537754354742	0.950445692055168	0.60102680173602	0.595456480441332	0.958113656895976	1.21304755870236	1.34178250789582	0.753761842753674	2.26947375355718	0.148584976709105	1
Merged-chr2-150755253-4	chr2	150755154	150755354	+	612.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355068, intron 2 of 13)	intron (NM_001355068, intron 2 of 13)	6173.0	NM_172117	12497.0	Mm.275524	NM_172117	ENSMUSG00000033068	Entpd6	2700026H11Rik|Cd39l2|NTPDase-6	ectonucleoside triphosphate diphosphohydrolase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122867457-2	chr8	122867357	122867557	+	917.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_007662)	TTS (NM_007662)	19083.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-103453704-4	chr15	103453598	103453798	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153505)	promoter-TSS (NM_153505)	-127.0	NM_153505	105855.0	Mm.30805	NM_153505	ENSMUSG00000022488	Nckap1l	4930568P13Rik|AI463083|Hem1|Hemp1	NCK associated protein 1 like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-52921514-4	chr6	52921421	52921621	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173406, intron 1 of 4)	intron (NM_173406, intron 1 of 4)	-11901.0	NM_001168277	231986.0	Mm.386865	NM_173406	ENSMUSG00000063568	Jazf1	AI591476|C820002C15|Jaz1|Tip27	JAZF zinc finger 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-124830199-3	chr8	124830095	124830295	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_198632, exon 10 of 10)	3' UTR (NM_198632, exon 10 of 10)	32834.0	NM_025615	66523.0	Mm.436864	NM_025615	ENSMUSG00000031984	2810004N23Rik	3110004G14Rik|Ayu21-55|Gt(pU21)55Imeg|GtAyu21-55	RIKEN cDNA 2810004N23 gene	protein-coding	0.776165815213163	1.13331469110094	0.829436679472254	0.810014292233495	1.19959359301797	2.10308013040483	2.37029504720253	2.20946584156077	4.72598072062851	0.000833650195460646	0.0166887681509513
Merged-chr13-3545114-4	chr13	3545003	3545203	+	843.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008112, intron 1 of 10)	intron (NM_008112, intron 1 of 10)	7028.0	NM_008112	14569.0	Mm.153226	NM_008112	ENSMUSG00000021218	Gdi2	GDI-B|GDIB|Gdi3	guanosine diphosphate (GDP) dissociation inhibitor 2	protein-coding	3.99508091829939	3.48306806912142	4.11290277822469	4.19218105976496	3.79087449945025	1.80300727505089	3.29248855684368	2.70775645065122	-1.29079737764773	0.0362448294948433	0.27010277284418
Merged-chr5-32112709-4	chr5	32112616	32112816	+	995.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23756.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	5.01181972636953	6.09999771373822	5.54051418875143	5.72874599313733	3.49335696081507	4.89713987487528	4.48140432224717	4.78419294144718	-1.34712330215766	0.000311491434412232	0.00757555587177965
Merged-chr2-143978644-4	chr2	143978564	143978764	+	985.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024281, intron 2 of 23)	intron (NM_024281, intron 2 of 23)	32599.0	NM_133626	81910.0	Mm.13705	NM_024281	ENSMUSG00000027422	Rrbp1	1700087N07Rik|5730465C04Rik|ES/130|mKIAA1398|mRRp0|mRRp1.8|mRRp10|mRRp15a|mRRp15b|mRRp16.8|mRRp2|mRRp41|mRRp47|mRRp5.4|p180	ribosome binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-3131625-2	chr11	3131505	3131705	+	1000.0	f0_balb.idr|f1_balb.idr	TTS (NM_030207)	TTS (NM_030207)	7584.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115574668-2	chr11	115574557	115574757	+	911.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001002929, intron 7 of 18)	MTC|LTR|ERVL-MaLR	10213.0	NM_001002929	445007.0	Mm.4379	NM_001002929	ENSMUSG00000020739	Nup85	Pcnt1|frount	nucleoporin 85	protein-coding	-0.906278453279413	-0.407431447964563	-1.048208294768	-1.05352992943534	-1.05671119907732	-1.03350740516421	-1.04547307017549	-1.05313686373073	-2.88793990269837	0.350705703949045	1
Merged-chr2-48001957-3	chr2	48001863	48002063	+	951.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-812146.0	NM_007396	11480.0	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180848276-4	chr1	180848189	180848389	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2862.0	NM_145943	208768.0	Mm.272625	NM_145943	ENSMUSG00000038806	Sde2	-	SDE2 telomere maintenance homolog (S. pombe)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-143315167-7	chr5	143315020	143315220	+	987.785706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_172726, exon 1 of 6)	5' UTR (NM_172726, exon 1 of 6)	240.0	NM_172726	231868.0	Mm.440105	NM_172726	ENSMUSG00000039244	E130309D02Rik	A630028N22	RIKEN cDNA E130309D02 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-82826955-2	chr6	82826855	82827055	+	734.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	-52501.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132607714-2	chr4	132607625	132607825	+	771.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-31321.0	NM_210071	14050.0	Mm.227733	NM_010166	ENSMUSG00000028886	Eya3	AI844637	EYA transcriptional coactivator and phosphatase 3	protein-coding	0.962674491739274	0.501685635633702	0.49357392518087	1.13124360131892	0.478397220291067	0.704435317543045	1.08591420971182	0.929679031774117	0.0614481639681757	0.970769462720723	1
Merged-chr4-43479698-4	chr4	43479581	43479781	+	918.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4028.0	NM_019436	54390.0	Mm.31775	NM_019436	ENSMUSG00000028460	Sit1	Sit	suppression inducing transmembrane adaptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-118491964-4	chr7	118491884	118492084	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033380)	promoter-TSS (NM_001033380)	-9.0	NM_001033380	319622.0	Mm.323386	NM_001033380	ENSMUSG00000095115	Itpripl2	C130081G24|E030018N11Rik	inositol 1,4,5-triphosphate receptor interacting protein-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128694286-2	chr2	128694190	128694390	+	868.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-4625.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-73685431-3	chr12	73685330	73685530	+	745.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008856, intron 2 of 13)	intron (NM_008856, intron 2 of 13)	100634.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135009885-5	chr5	135009764	135009964	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033794, exon 1 of 5)	non-coding (NR_033794, exon 1 of 5)	408.0	NR_033794	68758.0	Mm.389700	NM_145215	ENSMUSG00000040532	Abhd11	1110054D16Rik|A630008N09Rik|Wbscr21	abhydrolase domain containing 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-34748690-2	chr13	34748590	34748790	+	774.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER5A1|DNA|hAT-Charlie	9048.0	NM_138746	108161.0	Mm.41991	NM_138746	ENSMUSG00000038246	Fam50b	D0H6S2654E|X5L|XAP-5-like	family with sequence similarity 50, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-154657612-1	chr2	154657512	154657712	+	656.0	f0_balb.idr	intron (NM_029362, intron 1 of 4)	intron (NM_029362, intron 1 of 4)	586.0	NM_029362	75608.0	Mm.262480	NM_029362	ENSMUSG00000038467	Chmp4b	2010012F05Rik|C76846|Snf7-2	charged multivesicular body protein 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-13048777-2	chr7	13048677	13048877	+	634.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290453, intron 5 of 6)	intron (NM_001290453, intron 5 of 6)	5987.0	NM_001290452	109889.0	Mm.10103	NM_145819	ENSMUSG00000030380	Mzf1	Mzf-2|Mzf2|Zfp121|Zfp98|Znf42	myeloid zinc finger 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-29208539-3	chr6	29208464	29208664	+	893.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302934, intron 3 of 14)	intron (NM_001302934, intron 3 of 14)	3733.0	NM_011829	23917.0	Mm.260707	NM_011829	ENSMUSG00000003500	Impdh1	B930086D20Rik|IMPDH-I	inosine monophosphate dehydrogenase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-15652851-3	chr17	15652777	15652977	+	912.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR12H|LTR|ERVK	21089.0	NR_045431	71008.0	Mm.399492	NR_045431		4933401D09Rik	-	RIKEN cDNA 4933401D09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-17949364-2	chr10	17949264	17949464	+	693.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1297.0	NM_001033432	380629.0	Mm.276430	NM_001033432	ENSMUSG00000039879	Heca	Gm869|HDC|HDCL	hdc homolog, cell cycle regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-63865417-2	chr17	63865317	63865517	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037997, intron 1 of 18)	intron (NM_001037997, intron 1 of 18)	1436.0	NM_001037997	14158.0	Mm.23039	NM_008000	ENSMUSG00000000127	Fer	AV082135|C330004K01Rik|Fert|Fert2	fer (fms/fps related) protein kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-65699361-2	chr5	65699218	65699418	+	628.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-1462.0	NM_001081321	71521.0	Mm.278974	NM_027818	ENSMUSG00000029202	Pds5a	9030416H16Rik|E230024D05Rik|mKIAA0648	PDS5 cohesin associated factor A	protein-coding	1.14199444682189	0.949988937970673	0.571401807702071	0.737420533907878	1.0613659418151	1.34096921389428	0.573401206414542	0.74087402723043	0.47837332261204	0.755536998706015	1
Merged-chr10-77397478-2	chr10	77397378	77397578	+	979.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001024838, intron 1 of 11)	intron (NM_001024838, intron 1 of 11)	20795.0	NM_130895	110532.0	Mm.276815	NM_130895	ENSMUSG00000020262	Adarb1	1700057H01Rik|AW124433|AW558573|Adar2|BB220382|D10Bwg0447e|Red1	adenosine deaminase, RNA-specific, B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-142060412-3	chr7	142060305	142060505	+	784.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001347560, exon 1 of 5)	5' UTR (NM_001347560, exon 1 of 5)	448.0	NM_001347560	101513.0	Mm.53259	NM_028308	ENSMUSG00000025147	Mob2	1110017M21Rik|2700078K21Rik|AI256456|Mmh	MOB kinase activator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-66861940-3	chr1	66861831	66862031	+	697.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007381, intron 1 of 10)	intron (NM_007381, intron 1 of 10)	1378.0	NM_007381	11363.0	Mm.2445	NM_007381	ENSMUSG00000026003	Acadl	AA960361|AU018452|C79855|LCAD	acyl-Coenzyme A dehydrogenase, long-chain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-24118467-3	chr5	24118369	24118569	+	867.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161800, intron 1 of 9)	intron (NM_001161800, intron 1 of 9)	17879.0	NM_001161800	52323.0	Mm.273768	NM_026448	ENSMUSG00000028986	Klhl7	2700038B03Rik|D5Ertd363e|SBBI26	kelch-like 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-84590459-4	chr6	84590373	84590573	+	972.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175475, intron 1 of 6)	intron (NM_175475, intron 1 of 6)	3337.0	NM_175475	232174.0	Mm.255246	NM_175475	ENSMUSG00000063415	Cyp26b1	CP26|P450RAI-2	cytochrome P450, family 26, subfamily b, polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-149948575-1	chr1	149948475	149948675	+	708.0	f0_balb.idr	intron (NM_008869, intron 1 of 17)	intron (NM_008869, intron 1 of 17)	12715.0	NM_008869	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-57688181-3	chr10	57688082	57688282	+	878.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039050, intron 2 of 4)	intron (NM_001039050, intron 2 of 4)	37201.0	NM_001190402	18768.0	Mm.262135	NM_008863	ENSMUSG00000019876	Pkib	Pkibeta|Prkacn2	protein kinase inhibitor beta, cAMP dependent, testis specific	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-86525395-4	chr1	86525295	86525495	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1162.0	NR_153834	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-93013470-4	chr7	93013367	93013567	+	972.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-66412.0	NM_021427	58238.0	Mm.113787	NM_021427	ENSMUSG00000051515	Fam181b	A830059I20Rik|AB041569	family with sequence similarity 181, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-29439402-2	chr19	29439302	29439502	+	866.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021396, intron 3 of 5)	intron (NM_021396, intron 3 of 5)	28483.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-30365693-2	chr16	30365601	30365801	+	729.0	f0_balb.idr|f0_c57.idr	intron (NM_001128096, intron 3 of 33)	(TG)n|Simple_repeat|Simple_repeat	22829.0	NM_001128094	224088.0	Mm.8924	NM_001128094	ENSMUSG00000022533	Atp13a3	AU022875|Gm1745|Gm541|Gm542	ATPase type 13A3	protein-coding	1.60993903577739	2.06025181642118	1.57907086901403	1.9342179322635	1.48408754585223	2.29062996581318	1.88472858383484	1.54732770488051	0.0986757396961672	0.922150500623305	0.998431161219273
Merged-chr9-39629297-1	chr9	39629197	39629397	+	582.5	f0_c57.idr	Intergenic	Intergenic	6172.0	NM_146279	258276.0	Mm.390137	NM_146279	ENSMUSG00000059867	Olfr960	MOR224-12	olfactory receptor 960	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-165737652-4	chr1	165737572	165737772	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26086.0	NR_149310	433375.0	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-68549293-2	chr11	68549193	68549393	+	672.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001004435, intron 18 of 19)	intron (NM_001004435, intron 18 of 19)	-6893.0	NM_146004	215723.0	Mm.131205	NM_146004	ENSMUSG00000048329	Mfsd6l	-	major facilitator superfamily domain containing 6-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-122099425-2	chr14	122099325	122099525	+	558.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_015586, intron 3 of 3)	MER90|LTR|ERV1	7549.0	NR_015586	319727.0	Mm.215552	NR_015586		A330035P11Rik	-	RIKEN cDNA A330035P11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-103065190-4	chr12	103065075	103065275	+	778.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081017, intron 14 of 48)	intron (NM_001081017, intron 14 of 48)	116316.0	NM_001081017	217843.0	Mm.387073	NM_177621	ENSMUSG00000021198	Unc79	9030205A07Rik|Mlca3	unc-79 homolog (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-31094577-4	chr3	31094471	31094671	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011386)	promoter-TSS (NM_011386)	-487.0	NM_001039090	20482.0	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-91057126-2	chr1	91057026	91057226	+	863.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008515, intron 1 of 22)	IMPB_01|Satellite|Satellite	3682.0	NM_001310732	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128392080-1	chr2	128391980	128392180	+	798.0	f1_c57bl6.idr	intron (NR_028591, intron 1 of 1)	L1MB3|LINE|L1	37271.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	2.38681015707092	2.05792988141048	2.33235439583438	2.26522734067271	1.96660349573709	1.27466172299054	1.24791388496447	2.27714307646882	-1.25563810866511	0.220036742080772	0.711207120550944
Merged-chr3-133543703-3	chr3	133543600	133543800	+	864.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040400, intron 1 of 10)	intron (NM_001040400, intron 1 of 10)	690.0	NM_001040400	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-17418342-4	chr10	17418252	17418452	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-304876.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-87262867-4	chr12	87262771	87262971	+	969.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142581, intron 2 of 18)	MTD|LTR|ERVL-MaLR	1373.0	NM_134044	104799.0	Mm.208750	NM_134044	ENSMUSG00000021038	Vipas39	6720456H09Rik|9330175H22Rik|AI413782|SPE-39|Spe39|Vipar|hSPE-39	VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124425839-3	chr6	124425754	124425954	+	719.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9999.0	NM_001360570	19305.0	Mm.22418	NM_008995	ENSMUSG00000005069	Pex5	AW212715|ESTM1|PTS1-BP|PTS1R|PXR1P|Pxr1|X83306	peroxisomal biogenesis factor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-80044201-2	chr11	80044101	80044301	+	845.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36790.0	NM_001277106	54394.0	Mm.272093	NM_018776	ENSMUSG00000017561	Crlf3	BB164954|Creme9|Cytor4	cytokine receptor-like factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-43901720-4	chr10	43901611	43901811	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_130892)	promoter-TSS (NM_130892)	25.0	NM_001081054	76563.0	Mm.5904	NM_001081054	ENSMUSG00000019863	Qrsl1	2700038P16Rik|C80053|GatA	glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-75037654-4	chr9	75037561	75037761	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021548)	promoter-TSS (NM_021548)	47.0	NR_152135	59046.0	Mm.247837	NM_021548	ENSMUSG00000007656	Arpp19	19kDa|2700024H10Rik|ARPP-19|AW559096|Arpp12	cAMP-regulated phosphoprotein 19	protein-coding	4.2865975614626	4.0419397777493	4.79221585053453	4.13503239443	4.80293280907009	4.42351983482522	4.86513073259556	4.61078208744371	0.433912508400093	0.254859023986403	0.753028707056855
Merged-chr7-127993751-4	chr7	127993637	127993837	+	944.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_023258, exon 1 of 3)	5' UTR (NM_023258, exon 1 of 3)	130.0	NM_023258	66824.0	Mm.24163	NM_023258	ENSMUSG00000030793	Pycard	9130417A21Rik|Asc|CARD5|TMS-1|TNS1|masc	PYD and CARD domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46699370-4	chr19	46699255	46699455	+	934.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025563, intron 1 of 4)	intron (NM_025563, intron 1 of 4)	-8088.0	NM_020577	57344.0	Mm.28566	NM_020577	ENSMUSG00000003559	As3mt	2310045H08Rik|Cyt19	arsenic (+3 oxidation state) methyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-43304016-3	chr6	43303928	43304128	+	860.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_130869, exon 9 of 9)	exon (NM_130869, exon 9 of 9)	5526.0	NM_130869	18291.0	Mm.17715	NM_130869	ENSMUSG00000029736	Nobox	OG2|Og2x	NOBOX oogenesis homeobox	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-87107765-3	chr10	87107666	87107866	+	749.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029685, intron 2 of 5)	intron (NM_029685, intron 2 of 5)	49720.0	NM_029685	76640.0	Mm.78423	NM_029685	ENSMUSG00000047129	1700113H08Rik	-	RIKEN cDNA 1700113H08 gene	protein-coding	2.42735667308048	2.45213923311284	1.5117873109292	2.43799948146965	3.05453493212597	2.98478467181338	3.50070166467627	3.13516193381069	1.77658902092475	0.0160399925726107	0.152033339955613
Merged-chr5-102062008-2	chr5	102061908	102062108	+	660.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 1 of 66)	intron (NM_172882, intron 1 of 66)	7913.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34746807-4	chr17	34746708	34746908	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2911.0	NM_009780	12268.0	Mm.477109	NM_009780	ENSMUSG00000073418	C4b	C4|Ss	complement component 4B (Chido blood group)	protein-coding	4.43414826216747	4.98496541821205	4.3605995415944	3.65846940225574	4.12161322536243	3.7468227950453	4.09569508082604	4.4146788850003	-0.412576090751114	0.350277482922665	0.850815428289938
Merged-chr6-108340536-3	chr6	108340451	108340651	+	817.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 5 of 61)	L2a|LINE|L2	127455.0	NM_010585	16438.0	Mm.227912	NM_010585	ENSMUSG00000030102	Itpr1	D6Pas2|Gm10429|IP3R 1|IP3R1|InsP3R|Ip3r|Itpr-1|P400|Pcp-1|Pcp1|insP3R1|opt|wblo	inositol 1,4,5-trisphosphate receptor 1	protein-coding	0.876259412487145	0.98210171460151	0.949473995644519	0.923024966226081	2.44771784173417	2.20192966729147	2.94322216171201	2.25342612351479	5.86277090557652	7.59915282055435e-06	0.000367639659439561
Merged-chr5-64225334-2	chr5	64225234	64225434	+	805.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019636, intron 2 of 19)	intron (NM_019636, intron 2 of 19)	-5023.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-85842651-3	chr9	85842554	85842754	+	724.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164792)	promoter-TSS (NM_001164792)	-198.0	NM_001164792	21983.0	Mm.20864	NM_011627	ENSMUSG00000035274	Tpbg	5T4|AW495680|WAIF1	trophoblast glycoprotein	protein-coding	2.16801291379523	1.66276290418195	2.44636076252571	1.15041524810764	2.09989886244245	2.25945777978277	1.17678731266064	1.9998335817167	-0.0274023852673842	0.980173326054313	0.998431161219273
Merged-chr18-88820273-4	chr18	88820160	88820360	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	73947.0	NM_018821	54607.0	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-80150193-4	chr18	80150077	80150277	+	951.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175028, intron 1 of 3)	intron (NM_175028, intron 1 of 3)	1305.0	NM_175028	240442.0	Mm.26594	NM_175028	ENSMUSG00000053950	Adnp2	8430420L05Rik|BC024969|Kiaa0863|Zfp508|mKIAA0863	ADNP homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-14475091-4	chr10	14475008	14475208	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001002268, intron 2 of 24)	intron (NM_001002268, intron 2 of 24)	69928.0	NM_001002268	215798.0	Mm.440142	NM_001002268	ENSMUSG00000039116	Adgrg6	1190004A11Rik|AI449247|AW045736|DREG|Gm222|Gpr126	adhesion G protein-coupled receptor G6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117362141-4	chr8	117362026	117362226	+	978.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028941, intron 1 of 20)	intron (NM_028941, intron 1 of 20)	12956.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-43504377-2	chr1	43504277	43504477	+	807.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_010879, intron 1 of 4)	intron (NM_010879, intron 1 of 4)	58626.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-111879409-1	chr2	111879309	111879509	+	587.5	f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-5556.0	NM_146401	258396.0	Mm.377480	NM_146401	ENSMUSG00000074955	Olfr1305	MOR245-8	olfactory receptor 1305	protein-coding	0.398085957004159	0.995476679925702	0.729233155277971	0.119889900292005	0.270461861203612	0.133753463197635	0.126798121977538	0.120830944005707	-3.38672166014131	0.0898711627385065	1
Merged-chr10-62577657-2	chr10	62577557	62577757	+	961.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028197, intron 1 of 6)	intron (NM_028197, intron 1 of 6)	800.0	NM_028197	72320.0	Mm.258955	NM_028197	ENSMUSG00000036955	Kif1bp	0710007C18Rik|2510003E04Rik|KBP|mKIAA1279	KIF1 binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-36496797-4	chr15	36496713	36496913	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175134)	promoter-TSS (NM_175134)	-22.0	NM_175134	68839.0	Mm.396537	NM_175134	ENSMUSG00000048307	Ankrd46	1110054N06Rik|AI314978|AI987733	ankyrin repeat domain 46	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-23966340-1	chr17	23966240	23966440	+	631.0	f1_c57bl6.idr	Intergenic	Intergenic	8890.0	NM_013921	30943.0	Mm.142568	NM_013921	ENSMUSG00000024124	Prss30	2010015P21Rik|Disp|Disp1|Tmprss8	protease, serine 30	protein-coding	1.13160205764554	0.472795512816251	1.17557797003978	0.457050914431484	0.964859438691198	1.00623980477172	0.46589517754458	0.458256685654303	-0.542536433043728	0.760010864930976	1
Merged-chr9-99416950-1	chr9	99416850	99417050	+	609.0	f0_balb.idr	intron (NM_008624, intron 1 of 5)	intron (NM_008624, intron 1 of 5)	19762.0	NM_008624	17532.0	Mm.2045	NM_008624	ENSMUSG00000032470	Mras	2900078C09Rik|AI326250	muscle and microspikes RAS	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-20806495-2	chr18	20806395	20806595	+	566.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3B|LINE|L1	-60091.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-64737858-4	chr1	64737746	64737946	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022721)	promoter-TSS (NM_022721)	-96.0	NM_022721	14367.0	Mm.150813	NM_022721	ENSMUSG00000045005	Fzd5	5330434N09Rik|AI427138|Fz-5|Fz5|mFz5	frizzled class receptor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89905612-4	chr3	89905502	89905702	+	968.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010559, intron 1 of 9)	intron (NM_010559, intron 1 of 9)	7594.0	NM_001310676	16194.0	Mm.2856	NM_010559	ENSMUSG00000027947	Il6ra	CD126|IL-6R|IL-6R-alpha|IL-6RA|Il6r	interleukin 6 receptor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-104146505-3	chr8	104146391	104146591	+	737.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24022.0	NM_001141924	65115.0	Mm.41849	NM_001141922	ENSMUSG00000031872	Bean1	Bean	brain expressed, associated with Nedd4, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-143434618-4	chr5	143434495	143434695	+	711.450012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29898.0	NM_144915	231871.0	Mm.469963	NM_144915	ENSMUSG00000039206	Daglb	E330036I19Rik	diacylglycerol lipase, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-13748327-3	chr9	13748231	13748431	+	852.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023858)	promoter-TSS (NM_023858)	-850.0	NR_024025	77116.0	Mm.210405	NM_023858	ENSMUSG00000031918	Mtmr2	6030445P13Rik	myotubularin related protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-149376056-4	chr5	149375993	149376193	+	644.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35656.0	NM_027519	70717.0	Mm.252139	NM_027519	ENSMUSG00000029659	Medag	6330406I15Rik|Awms3|MEDA-4|Meda4|mAWMS3	mesenteric estrogen dependent adipogenesis	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-8519841-3	chr10	8519736	8519936	+	674.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1011.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-170692198-2	chr2	170692098	170692298	+	584.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39609.0	NM_029761	76829.0	Mm.41633	NM_029761	ENSMUSG00000027560	Dok5	2700055C10Rik	docking protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-79136059-4	chr12	79135943	79136143	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009705, intron 2 of 7)	intron (NM_009705, intron 2 of 7)	5255.0	NM_009705	11847.0	Mm.3506	NM_009705	ENSMUSG00000021125	Arg2	AII|AU022422	arginase type II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-90216204-1	chr9	90216104	90216304	+	970.0	f1_balb.idr	intron (NM_194334, intron 9 of 12)	intron (NM_194334, intron 9 of 12)	53226.0	NM_001311115	108153.0	Mm.102141	NM_001003911	ENSMUSG00000032363	Adamts7	ADAM-TS7|ADAMTS7B	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 7	protein-coding	-1.20406370813143	-1.56956373024278	-1.57884638916872	-1.58647144159385	-1.598104728449	-1.56755213932999	-1.57674499865798	-1.58510656085539	-1.70745470802464	0.626337835847419	1
Merged-chr11-6528820-4	chr11	6528719	6528919	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045893)	promoter-TSS (NR_045893)	-59.0	NR_045893	100041286.0	Mm.459507	NR_045893	ENSMUSG00000085156	Snhg15	Gm11974	small nucleolar RNA host gene 15	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-63860268-4	chr14	63860146	63860346	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028228)	promoter-TSS (NM_028228)	-66.0	NM_028228	72400.0	Mm.379214	NM_028228	ENSMUSG00000021958	Pinx1	2210403I16Rik|2610028A01Rik|67-11-3|AU024023|LPTS|LPTS1	PIN2/TERF1 interacting, telomerase inhibitor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-61294727-3	chr14	61294614	61294814	+	874.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033788, exon 2 of 3)	non-coding (NR_033788, exon 2 of 3)	10620.0	NR_033788	67355.0	Mm.193728	NR_033788	ENSMUSG00000101505	1700109G14Rik	1700126G13Rik	RIKEN cDNA 1700109G14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-29357681-4	chr10	29357536	29357736	+	865.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001284279)	promoter-TSS (NM_001284279)	77.0	NM_001284279	68031.0	Mm.28930	NM_026518	ENSMUSG00000038876	Rnf146	2610509H23Rik|Iduna	ring finger protein 146	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-69989414-4	chr9	69989304	69989504	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016787)	promoter-TSS (NM_016787)	-62.0	NM_016787	12175.0	Mm.159777	NM_016787	ENSMUSG00000011958	Bnip2	5730523P12Rik|BNIP2beta|Nip21	BCL2/adenovirus E1B interacting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-62826261-2	chr9	62826161	62826361	+	592.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C|LTR|ERVK	-12526.0	NM_001033175	76524.0	Mm.283636	NM_001033175	ENSMUSG00000032245	Cln6	1810065L06Rik|AW743417|D9Bwg1455e|nclf	ceroid-lipofuscinosis, neuronal 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-134963052-2	chr1	134962952	134963152	+	663.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026024, intron 1 of 6)	B1F|SINE|Alu	487.0	NM_001278115	67196.0	Mm.284587	NM_026024	ENSMUSG00000026429	Ube2t	2700084L22Rik|C80607	ubiquitin-conjugating enzyme E2T	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-56313179-3	chr8	56313074	56313274	+	780.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008278, intron 4 of 6)	intron (NM_008278, intron 4 of 6)	18622.0	NM_008278	15446.0	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-59954900-3	chr2	59954787	59954987	+	776.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001182, intron 12 of 35)	intron (NM_001001182, intron 12 of 35)	-72281.0	NM_028118	72137.0	Mm.288734	NM_028118	ENSMUSG00000026988	Wdsub1	1700048E19Rik|2610014F08Rik	WD repeat, SAM and U-box domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-65956115-3	chr3	65955988	65956188	+	810.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355433, intron 3 of 11)	intron (NM_001355433, intron 3 of 11)	2161.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-60255997-2	chr10	60255897	60256097	+	765.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-21631.0	NM_001146123	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-21714636-4	chr19	21714551	21714751	+	780.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61342.0	NM_146096	226016.0	Mm.28796	NM_146096	ENSMUSG00000047368	Abhd17b	5730446C15Rik|Cgi67|Fam108b|Fam108b1	abhydrolase domain containing 17B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117335793-3	chr10	117335695	117335895	+	859.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MurERV4-int|LTR|ERVK	41178.0	NM_001013391	432508.0	Mm.478881	NM_001013391	ENSMUSG00000055531	Cpsf6	4733401N12Rik|AI256641|CFIM|CFIM68|HPBRII-4|HPBRII-7	cleavage and polyadenylation specific factor 6	protein-coding	1.18740606221576	0.725271705493615	1.30194890294231	1.02330961747669	1.19836798562596	0.727458244806894	1.31384656005614	1.02845320454264	0.0386712260965847	0.978319131538673	0.998431161219273
Merged-chr3-87515926-6	chr3	87515827	87516027	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9651.0	NM_001083318	27049.0	Mm.219460	NM_012051	ENSMUSG00000003382	Etv3	AI414410|METS|Pe1	ets variant 3	protein-coding	5.73917453196551	5.03458328854248	5.12210847348196	5.26128261454818	5.60486522703952	5.59045486453326	6.4027993238442	5.97066011848576	0.681164807393014	0.0201372545002935	0.180124338589355
Merged-chr13-115077536-4	chr13	115077433	115077633	+	843.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033228, intron 1 of 28)	intron (NM_001033228, intron 1 of 28)	12625.0	NM_134058	105083.0	Mm.486295	NM_134058	ENSMUSG00000042275	Pelo	AA409897|AI852218	pelota mRNA surveillance and ribosome rescue factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81176605-4	chr10	81176519	81176719	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007907)	promoter-TSS (NM_007907)	-12.0	NM_007907	13629.0	Mm.2903	NM_007907	ENSMUSG00000034994	Eef2	Ef-2	eukaryotic translation elongation factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-47354863-1	chr14	47354763	47354963	+	651.0	f1_c57bl6.idr	Intergenic	Intergenic	-18997.0	NM_010705	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	2.51271498874836	1.55405530470754	1.22856487837146	2.94350391637877	1.76829154490198	3.16188228364136	1.92820661260206	1.864686165479	0.156341289481563	0.876834029056493	0.998431161219273
Merged-chr6-125406372-1	chr6	125406272	125406472	+	556.0	f1_balb.idr	Intergenic	Intergenic	-25868.0	NM_198604	213522.0	Mm.333396	NM_198604	ENSMUSG00000038167	Plekhg6	BC026778|Gm155	pleckstrin homology domain containing, family G (with RhoGef domain) member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-84715239-4	chr3	84715119	84715319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49027.0	NM_177260	320782.0	Mm.107370	NM_177260	ENSMUSG00000056498	Tmem154	9930117H01Rik	transmembrane protein 154	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-130865748-4	chr7	130865648	130865848	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346515)	promoter-TSS (NM_001346515)	24.0	NM_001346515	101476.0	Mm.323554	NM_133942	ENSMUSG00000040268	Plekha1	AA960558|C920009D07Rik|TAPP1	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-77869810-3	chr18	77869715	77869915	+	682.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013831, intron 6 of 14)	intron (NM_013831, intron 6 of 14)	-68652.0	NM_001195633	100502841.0	Mm.297782	NM_001195633	ENSMUSG00000039840	Epg5	4732475F16|5430411K18Rik|AI661957|AW456499|mKIAA1632	ectopic P-granules autophagy protein 5 homolog (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-146963736-4	chr5	146963616	146963816	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001256101)	promoter-TSS (NM_001256101)	81.0	NM_001256101	76366.0	Mm.486234	NM_029581	ENSMUSG00000016510	Mtif3	2810012L14Rik|AI414549	mitochondrial translational initiation factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-47719185-1	chr9	47719085	47719285	+	568.0	f0_balb.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	99023.0	NR_046048	100038460.0	Mm.447649	NR_046048		Gm10677	-	predicted gene 10677	ncRNA	-0.240815238119825	-0.226663667917654	-0.231301313116906	-0.0701374463485708	0.241373916903272	-0.225618057298651	-0.230278575538377	0.490086329490293	2.93468195840078	0.220148496362929	1
Merged-chr6-43384548-3	chr6	43384445	43384645	+	976.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013861, intron 8 of 8)	intron (NM_013861, intron 8 of 8)	-57884.0	NR_045988	319812.0	Mm.446393	NR_045988		9430018G01Rik	-	RIKEN cDNA 9430018G01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-11003206-1	chr15	11003106	11003306	+	667.0	f0_balb.idr	intron (NM_053077, intron 2 of 6)	intron (NM_053077, intron 2 of 6)	2485.0	NM_053077	22293.0	Mm.138278	NM_053077	ENSMUSG00000022243	Slc45a2	Aim-1|Aim1|Dbr|Matp|Oca4|blanc-sale|bls|uw	solute carrier family 45, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-34483141-2	chr1	34483041	34483241	+	613.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-15271.0	NM_009355	21755.0	Mm.10725	NM_009355	ENSMUSG00000026125	Prss39	Tesp1	protease, serine 39	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-63882934-2	chr7	63882832	63883032	+	599.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33925.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	1.20615696954356	1.62015360535372	1.85385009463829	2.04586628837714	1.214416412738	0.962467893359077	1.13780000995542	0.941083913225586	-3.06984856488379	0.0245106580420305	0.206322877821526
Merged-chr12-110737898-4	chr12	110737804	110738004	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027149)	promoter-TSS (NM_027149)	7.0	NM_027149	69641.0	Mm.475762	NM_027149	ENSMUSG00000037957	Wdr20	2310040A13Rik|AI549910|Wdr20a	WD repeat domain 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-89170259-4	chr15	89170135	89170335	+	966.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159521, intron 3 of 37)	intron (NM_001159521, intron 3 of 37)	3716.0	NM_001159521	140570.0	Mm.267514	NM_138749	ENSMUSG00000036606	Plxnb2	Debt|plexin-B2	plexin B2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-21814211-2	chr4	21814111	21814311	+	620.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_152825, intron 10 of 17)	B1_Mur2|SINE|Alu	-33372.0	NM_025669	66625.0	Mm.100117	NM_025669	ENSMUSG00000028248	Pnisr	5730406M06Rik|AA673174|Pinsr|Sfrs18|Srsf18	PNN interacting serine/arginine-rich	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-92374332-3	chr5	92374245	92374445	+	912.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310664, intron 2 of 10)	intron (NM_001310664, intron 2 of 10)	-11049.0	NR_038116	56066.0	Mm.131723	NM_019494	ENSMUSG00000060183	Cxcl11	Cxc11|H174|I-tac|Ip9|Itac|Scyb11|Scyb9b|b-R1|betaR1	chemokine (C-X-C motif) ligand 11	protein-coding	0.842682079258837	1.44857369392808	0.42947137001801	0.421586402499085	1.15353293068713	0.850715102573145	0.431710012289224	0.422970063606768	-0.513579133263518	0.771081221988518	1
Merged-chr4-141572838-1	chr4	141572738	141572938	+	558.0	f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	26676.0	NR_030695	320456.0	Mm.32859	NM_177163		B330016D10Rik	-	RIKEN cDNA B330016D10 gene	ncRNA	0.994794238160694	0.721778726286843	1.65567359497699	1.41528797190148	1.12970939105855	0.72451189374862	1.47954063551174	0.701693805691808	-0.797094270795605	0.592227175399952	0.970172262486158
Merged-chr9-71805847-4	chr9	71805772	71805972	+	992.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34270.0	NM_001304362	68178.0	Mm.99961	NM_026599	ENSMUSG00000032232	Cgnl1	4933421H10Rik|9930020M10Rik|AI503810|Jacop	cingulin-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-88597216-4	chr17	88597109	88597309	+	998.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29346.0	NM_029858	77057.0	Mm.482203	NM_029858	ENSMUSG00000033855	Ston1	4921524J06Rik|C86231|Salf|Sblf	stonin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-32090820-2	chr17	32090720	32090920	+	670.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_027316, exon 1 of 9)	non-coding (NR_027316, exon 1 of 9)	603.0	NR_027316	435518.0	Mm.328944	NR_027316	ENSMUSG00000002791	Pdxk-ps	Gm9743	pyridoxal (pyridoxine, vitamin B6) kinase, pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-18622081-3	chr19	18622008	18622208	+	696.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017375, intron 1 of 9)	Lx3A|LINE|L1	9705.0	NM_017375	20409.0	Mm.172222	NM_017375	ENSMUSG00000024725	Ostf1	C78236|SH3P2|Sh3d3	osteoclast stimulating factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-39274435-3	chr6	39274344	39274544	+	828.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-67671.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-134181680-2	chr5	134181580	134181780	+	582.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-2358.0	NM_001359852	114674.0	Mm.218744	NM_053266	ENSMUSG00000015942	Gtf2ird2	1700012P16Rik	GTF2I repeat domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-38736526-4	chr6	38736458	38736658	+	908.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010433, intron 7 of 14)	intron (NM_010433, intron 7 of 14)	73489.0	NM_001101507	665180.0	Mm.349066	NM_001101507	ENSMUSG00000079598	Clec2l	AI414054|AW122724|Gm1064	C-type lectin domain family 2, member L	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-64851863-4	chr16	64851738	64851938	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347245)	promoter-TSS (NM_001347245)	-115.0	NM_001347245	72020.0	Mm.25960	NM_028059	ENSMUSG00000047141	Zfp654	1600021C16Rik|1810008K20Rik|433036|Gm5488|Znf654	zinc finger protein 654	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-173426894-2	chr1	173426816	173427016	+	827.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013779, intron 1 of 8)	RLTR49|LTR|ERVK	6312.0	NM_001013779	383619.0	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	2.19809079542055	3.64808661805433	3.17983600052248	2.59897292866353	2.2179237673733	2.7967909269838	3.55698958788495	1.98405667213335	-0.400600965189706	0.604454627397643	0.973889860145757
Merged-chr16-91390281-2	chr16	91390181	91390381	+	796.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347258, intron 5 of 7)	B3A|SINE|B2	-15954.0	NM_008349	16155.0	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-43888840-2	chr16	43888740	43888940	+	617.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029128, intron 1 of 7)	intron (NM_029128, intron 1 of 7)	836.0	NM_029128	106248.0	Mm.275354	NM_029128	ENSMUSG00000022704	Qtrt2	3110012M05Rik|4930470H18Rik|AI648807|Qrtr2|Qtrtd1	queuine tRNA-ribosyltransferase accessory subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-71167251-4	chr9	71167148	71167348	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1528.0	NR_110517	102635087.0	Mm.444536	NR_110517	ENSMUSG00000111429	Gm32511	-	predicted gene, 32511	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89247540-2	chr3	89247440	89247640	+	620.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310625, intron 3 of 4)	intron (NM_001310625, intron 3 of 4)	1067.0	NM_001310625	66059.0	Mm.177991	NM_025327	ENSMUSG00000042747	Krtcap2	0610010I12Rik|Kcp2	keratinocyte associated protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-105894066-3	chr3	105893956	105894156	+	914.2666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027025, intron 1 of 6)	intron (NM_027025, intron 1 of 6)	-10365.0	NM_009631	11542.0	Mm.235024	NM_009631	ENSMUSG00000000562	Adora3	A3AR|A3R|AA3R|ARA3|Gpcr2	adenosine A3 receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-86576704-2	chr11	86576604	86576804	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	7454.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-134176545-7	chr5	134176468	134176668	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_033572, exon 1 of 11)	exon (NM_033572, exon 1 of 11)	199.0	NM_033572	94254.0	Mm.29508	NM_033572	ENSMUSG00000061979	Rcc1l	5730496C04Rik|AU019812|Wbscr16	reculator of chromosome condensation 1 like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25435683-3	chr7	25435531	25435731	+	907.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015569, intron 4 of 6)	intron (NR_015569, intron 4 of 6)	-22745.0	NM_153576	232983.0	Mm.10545	NM_153576	ENSMUSG00000060188	Cxcl17	VCC-1|Vcc1	chemokine (C-X-C motif) ligand 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81343795-2	chr10	81343695	81343895	+	710.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_148951)	promoter-TSS (NM_148951)	-529.0	NM_148951	209047.0	Mm.218755	NM_148951	ENSMUSG00000034872	Gipc3	Ahl5|Rgs19ip3	GIPC PDZ domain containing family, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-90891188-5	chr5	90891091	90891291	+	980.080017	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008176)	promoter-TSS (NM_008176)	-54.0	NM_008176	14825.0	Mm.21013	NM_008176	ENSMUSG00000029380	Cxcl1	Fsp|Gro1|KC|Mgsa|N51|Scyb1|gro	chemokine (C-X-C motif) ligand 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-170172836-2	chr1	170172736	170172936	+	764.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_133806, intron 1 of 10)	intron (NM_133806, intron 1 of 10)	2128.0	NM_133806	107652.0	Mm.27969	NM_133806	ENSMUSG00000026670	Uap1	AA420407|AA437972|AGX-1|AGX-2|AGX1|AgX|ESTM38|SPAG2	UDP-N-acetylglucosamine pyrophosphorylase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-123526974-2	chr4	123526874	123527074	+	879.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199137, intron 5 of 92)	intron (NM_001199137, intron 5 of 92)	-89446.0	NR_105824	102465214.0		NR_105824	ENSMUSG00000099005	Mir6398	Gm27657|mmu-mir-6398	microRNA 6398	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-121202750-2	chr6	121202650	121202850	+	609.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7984.0	NM_017379	53857.0	Mm.32884	NM_017379	ENSMUSG00000030137	Tuba8	-	tubulin, alpha 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128062489-2	chr10	128062389	128062589	+	622.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019766, intron 1 of 7)	intron (NM_019766, intron 1 of 7)	3507.0	NM_019766	56351.0	Mm.305816	NM_019766	ENSMUSG00000071072	Ptges3	5730442A20Rik|Ptges|Tebp|cPGES|p23|sid3177	prostaglandin E synthase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-9714186-1	chr3	9714086	9714286	+	605.0	f0_balb.idr	intron (NM_053182, intron 2 of 7)	intron (NM_053182, intron 2 of 7)	-104101.0	NM_133218	170753.0	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-22224558-2	chr9	22224458	22224658	+	901.400024	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1145.0	NM_172763	235047.0	Mm.290849	NM_172763	ENSMUSG00000057982	Zfp809	BB114266|C330026E23	zinc finger protein 809	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-32164552-1	chr12	32164452	32164652	+	750.0	f1_c57bl6.idr	Intergenic	MLT1F2|LTR|ERVL-MaLR	43786.0	NM_001146201	30955.0	Mm.101369	NM_020272	ENSMUSG00000020573	Pik3cg	5830428L06Rik|PI3Kgamma|p110gamma	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding	3.74019671480843	2.80081934117727	3.45436340851436	3.08269541252637	1.52206956440669	1.42603212027582	1.37331948224022	3.01904487985457	-2.33061430552698	0.00787386168002249	0.091914301082631
Merged-chr12-17554331-4	chr12	17554260	17554460	+	955.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9487.0	NM_013614	18263.0	Mm.34102	NM_013614	ENSMUSG00000011179	Odc1	ODC	ornithine decarboxylase, structural 1	protein-coding	4.21877799033733	5.06754638072308	4.39879753851626	3.50987308077088	4.20448106162928	4.86268207080129	4.53409544802496	4.30270492475184	0.11682850578272	0.788753200432415	0.998431161219273
Merged-chr16-33820960-4	chr16	33820852	33821052	+	912.5125119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8713.0	NM_010580	16419.0	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-6389570-2	chr4	6389470	6389670	+	554.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001098227, intron 6 of 8)	intron (NM_001098227, intron 6 of 8)	23890.0	NM_001098227	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83159636-4	chr6	83159518	83159718	+	842.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027948, intron 1 of 3)	B2_Mm2|SINE|B2	3214.0	NM_027948	71837.0	Mm.17621	NM_027948	ENSMUSG00000030030	1700003E16Rik	AU041756	RIKEN cDNA 1700003E16 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-33251023-2	chr15	33250923	33251123	+	685.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_176073, intron 3 of 7)	intron (NM_176073, intron 3 of 7)	154916.0	NR_033608	73486.0	Mm.483393	NM_028551	ENSMUSG00000058101	1700084J12Rik	-	ribosomal protein L7-like 1 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-30197779-1	chr17	30197679	30197879	+	684.0	f0_balb.idr	intron (NM_001356265, intron 5 of 5)	intron (NM_001356265, intron 5 of 5)	192740.0	NM_001356265	21769.0	Mm.220972	NM_148926	ENSMUSG00000044477	Zfand3	AW539211|TEG-27|Tex27	zinc finger, AN1-type domain 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-47015441-2	chr7	47015341	47015541	+	792.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7027.0	NM_175318	101685.0	Mm.155687	NM_175318	ENSMUSG00000049516	Spty2d1	5830435K17Rik|AI852426|P16H6	SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-142927112-2	chr5	142927012	142927212	+	550.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D11|SINE|Alu	-20358.0	NM_007393	11461.0	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30554489-2	chr7	30554389	30554589	+	881.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001290569)	TTS (NM_001290569)	1187.0	NM_001012401	243912.0	Mm.34885	NM_001012401	ENSMUSG00000036854	Hspb6	AA387366|Gm479|Hsp20	heat shock protein, alpha-crystallin-related, B6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-59544697-2	chr11	59544597	59544797	+	841.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153314, intron 2 of 9)	B2_Mm1t|SINE|B2	2011.0	NR_153314	216799.0	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-122616733-2	chr10	122616633	122616833	+	668.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31606.0	NR_105839	102465223.0		NR_105839	ENSMUSG00000098522	Mir6412	Gm27364|mmu-mir-6412	microRNA 6412	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-18641883-4	chr3	18641794	18641994	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-161417.0	NR_040544	73959.0	Mm.60616	NR_040544	ENSMUSG00000102699	4930433B08Rik	-	RIKEN cDNA 4930433B08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-102201679-1	chr2	102201579	102201779	+	568.0	f0_balb.idr	Intergenic	Intergenic	-15219.0	NM_001290784	241576.0	Mm.489740	NM_178886	ENSMUSG00000048058	Ldlrad3	6430500P08|AI194318|Lrad3	low density lipoprotein receptor class A domain containing 3	protein-coding	0.593953058572172	0.724304217683944	0.248164207501394	0.649617320488693	0.3762093955705	0.255263363138273	0.691730829471616	0.244484546181702	-1.11621938540317	0.546461954325247	1
Merged-chr6-127561314-4	chr6	127561229	127561429	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-16646.0	NM_001033464	381812.0	Mm.296093	NM_001033464	ENSMUSG00000061414	Cracr2a	Efcab4b|Gm1073|Gm462	calcium release activated channel regulator 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-124256893-2	chr9	124256793	124256993	+	788.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55801.0	NM_001243118	630836.0	Mm.458553	NM_001243117	ENSMUSG00000074829	2010315B03Rik	BC029716	RIKEN cDNA 2010315B03 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167789835-2	chr2	167789735	167789935	+	797.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	98658.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-103140239-3	chr3	103140142	103140342	+	900.194458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356383)	promoter-TSS (NM_001356383)	-84.0	NM_001356383	329727.0	Mm.293641	NM_177857	ENSMUSG00000007379	Dennd2c	A930010I20Rik	DENN/MADD domain containing 2C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-9532745-2	chr16	9532645	9532845	+	547.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	459788.0	NM_008170	14811.0	Mm.2953	NM_008170	ENSMUSG00000059003	Grin2a	GluN2A|GluRepsilon1|NMDAR2A|NR2A	glutamate receptor, ionotropic, NMDA2A (epsilon 1)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-6940962-4	chr7	6940872	6941072	+	932.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360502, intron 5 of 7)	intron (NM_001360502, intron 5 of 7)	35690.0	NR_036631	116811.0	Mm.381671	NR_036631	ENSMUSG00000108043	Zim3	1700128I23Rik	zinc finger, imprinted 3	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-148678753-3	chr5	148678649	148678849	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVB4_3-LTR_MM|LTR|ERVK	-63091.0	NR_028285	70138.0	Mm.417834	NR_028285	ENSMUSG00000086494	2210417A02Rik	AV081004	RIKEN cDNA 2210417A02 gene	ncRNA	4.29752555273793	4.30178011088032	4.76600559450816	4.50577052767385	2.45772213140595	2.63136484572562	3.26456225129314	3.36083614664084	-2.14941173616439	2.17476815269138e-05	0.000867833757072876
Merged-chr11-106135319-4	chr11	106135214	106135414	+	976.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011947, intron 6 of 15)	intron (NM_011947, intron 6 of 15)	24613.0	NM_001356459	67803.0	Mm.21687	NM_172397	ENSMUSG00000040699	Limd2	0610025L06Rik|AI413966	LIM domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46086587-2	chr19	46086487	46086687	+	800.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A2|LTR|ERVL-MaLR	10740.0	NM_001039351	70769.0	Mm.402190	NM_053086	ENSMUSG00000015176	Nolc1	NOPP130|NOPP140|P130	nucleolar and coiled-body phosphoprotein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-148578281-1	chr6	148578181	148578381	+	1000.0	f0_c57.idr	Intergenic	MLT2B2|LTR|ERVL	36028.0	NR_045867	622319.0	Mm.491049	NM_001037912	ENSMUSG00000070995	Gm6313	EG622319	predicted gene 6313	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-81601714-1	chr14	81601614	81601814	+	561.0	f1_balb.idr	Intergenic	(TTAA)n|Simple_repeat|Simple_repeat	1601412.0	NM_001351947	380924.0	Mm.26456	NM_001030294	ENSMUSG00000022026	Olfm4	GC1|GW112|Gm296|Gm913|OlfD|pPD4	olfactomedin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-136916814-2	chr2	136916714	136916914	+	746.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355671, intron 2 of 6)	intron (NM_001355671, intron 2 of 6)	17463.0	NM_001038641	74243.0	Mm.330612	NM_028201	ENSMUSG00000027281	Slx4ip	2210009G21Rik|2410004I22Rik|C85661|Slxip	SLX4 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-93162354-1	chr10	93162254	93162454	+	586.0	f1_c57bl6.idr	promoter-TSS (NR_035452)	promoter-TSS (NR_035452)	-431.0	NR_035452	100316689.0		NR_035452	ENSMUSG00000089214	Mir1931	mir-1931|mmu-mir-1931	microRNA 1931	ncRNA	-1.26571374789235	-1.51209590594483	-1.52146493977932	-1.38174326885381	-1.5409024774237	-1.51006559722904	-1.51934399588257	-1.52778336220656	-1.78996300869195	0.608863169873916	1
Merged-chr4-134117179-4	chr4	134117058	134117258	+	964.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026257, intron 8 of 14)	intron (NM_026257, intron 8 of 14)	11595.0	NM_080559	73723.0	Mm.22240	NM_080559	ENSMUSG00000028843	Sh3bgrl3	1110004L05Rik|AU022188	SH3 domain binding glutamic acid-rich protein-like 3	protein-coding	6.27283221083145	4.96734526076968	5.40480867597245	6.21069946660029	5.92741518268169	4.20054842541642	4.7979375629483	5.61625836773944	-0.5873715865991	0.129364911020211	0.563193643296662
Merged-chr1-105746697-4	chr1	105746577	105746777	+	948.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173187, intron 26 of 28)	intron (NM_173187, intron 26 of 28)	-34046.0	NM_009399	21934.0	Mm.6251	NM_009399	ENSMUSG00000026321	Tnfrsf11a	Ly109|ODFR|OFE|Rank|TRANCE-R|mRANK	tumor necrosis factor receptor superfamily, member 11a, NFKB activator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-75060651-2	chr8	75060551	75060751	+	628.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001136259, intron 12 of 15)	intron (NM_001136259, intron 12 of 15)	26965.0	NM_011622	21968.0	Mm.1967	NM_011622	ENSMUSG00000042870	Tom1	-	target of myb1 trafficking protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-122181615-4	chr14	122181508	122181708	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029556)	promoter-TSS (NM_029556)	-86.0	NM_029556	69634.0	Mm.34608	NM_029556	ENSMUSG00000025545	Clybl	0610033J05Rik|2310014M14Rik|AI256068|Clb	citrate lyase beta like	protein-coding	7.124104257676	7.60332814473386	7.25756068886808	7.7446770814386	6.76189626932015	7.25522961867209	7.16419853926868	7.1304179783978	-0.384451380353291	0.0355430480191128	0.266973386978286
Merged-chr17-35896054-1	chr17	35895954	35896154	+	543.0	f1_balb.idr	exon (NM_001033630, exon 2 of 6)	exon (NM_001033630, exon 2 of 6)	1324.0	NM_001033630	69662.0	Mm.260159	NM_001033630	ENSMUSG00000050705	2310061I04Rik	-	RIKEN cDNA 2310061I04 gene	protein-coding	-0.792619126855503	-0.780879559195557	-0.784708133444348	-0.787673613228584	-0.630555236571406	-0.779328268661242	-0.78386225510462	0.0788124512707684	3.39455540743524	0.230770849759901	1
Merged-chr19-11773553-2	chr19	11773450	11773650	+	760.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_025606, intron 3 of 3)	intron (NM_025606, intron 3 of 3)	3135.0	NM_025606	94063.0	Mm.203928	NM_025606	ENSMUSG00000024683	Mrpl16	2310039D06Rik	mitochondrial ribosomal protein L16	protein-coding	-0.475018197028128	-0.628291166474278	-0.6331111701303	0.41636991545853	-0.642204481306314	-0.627210687313732	-0.632044303947393	-0.636203369824845	-3.65489003995835	0.16964111540025	1
Merged-chr1-43810737-2	chr1	43810637	43810837	+	634.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026430, intron 1 of 14)	intron (NM_026430, intron 1 of 14)	16971.0	NM_026430	67883.0	Mm.387202	NM_026430	ENSMUSG00000057363	Uxs1	1600025I13Rik|AI451869|AI649125|AW550562	UDP-glucuronate decarboxylase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-55182748-4	chr13	55182632	55182832	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27050.0	NM_008739	18193.0	Mm.168965	NM_008739	ENSMUSG00000021488	Nsd1	AI528500|KMT3B	nuclear receptor-binding SET-domain protein 1	protein-coding	3.07802443841177	2.14462624958718	2.23280604049003	2.73969763069503	2.19971364179217	1.72179272288712	1.66450739543683	3.56268013887367	-0.0682072596339944	0.939128012404599	0.998431161219273
Merged-chr1-191241769-4	chr1	191241682	191241882	+	893.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17328.0	NR_151547	100504360.0	Mm.16927	NM_001033188		D730003I15Rik	AU020850	RIKEN cDNA D730003I15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-13575130-4	chr9	13574995	13575195	+	802.950012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-44894.0	NM_001013813	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-134719892-4	chr1	134719803	134720003	+	931.991699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355726, intron 1 of 8)	intron (NM_001355726, intron 1 of 8)	10603.0	NM_001355726	20980.0	Mm.5102	NM_009307	ENSMUSG00000026452	Syt2	IP4BP|R74640|mKIAA4194|sytII	synaptotagmin II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-144895526-2	chr4	144895426	144895626	+	585.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357274, intron 2 of 6)	intron (NM_001357274, intron 2 of 6)	2389.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-14066964-4	chr9	14066868	14067068	+	890.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR44-int|LTR|ERVK	-209333.0	NM_030261	75747.0	Mm.325126	NM_030261	ENSMUSG00000032009	Sesn3	5630400E15Rik|BC003348|SEST3	sestrin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-132735900-2	chr7	132735800	132736000	+	792.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347630, intron 3 of 3)	intron (NM_001347630, intron 3 of 3)	41016.0	NM_001347630	77938.0	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-25609205-4	chr8	25609112	25609312	+	947.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001735, intron 1 of 9)	intron (NM_001001735, intron 1 of 9)	6928.0	NM_001308482	234135.0	Mm.217337	NM_001001735	ENSMUSG00000054823	Nsd3	6720429E03|A530023P05|AI528490|WHISTLE|Whsc1l1	nuclear receptor binding SET domain protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-91371052-4	chr13	91370934	91371134	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045161, exon 3 of 3)	non-coding (NR_045161, exon 3 of 3)	17051.0	NR_045161	320297.0	Mm.375866	NR_045161	ENSMUSG00000097182	A830009L08Rik	-	RIKEN cDNA A830009L08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-107335092-5	chr11	107334906	107335106	+	905.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359616, intron 2 of 8)	B2_Mm2|SINE|B2	135714.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-73436240-2	chr13	73436140	73436340	+	556.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31143.0	NM_145376	210992.0	Mm.284649	NM_145376	ENSMUSG00000021608	Lpcat1	2900035H07Rik|Aytl2|BB137372|BC005662|C87117|LPCAT|rd11	lysophosphatidylcholine acyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-30604102-4	chr13	30603997	30604197	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10946.0	NR_045975	75090.0	Mm.292232	NR_045975	ENSMUSG00000086263	4930519D14Rik	-	RIKEN cDNA 4930519D14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-31112494-1	chr6	31112394	31112594	+	1000.0	f0_c57.idr	intron (NR_110471, intron 3 of 3)	intron (NR_110471, intron 3 of 3)	-49401.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-38506695-4	chr6	38506586	38506786	+	859.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_106130)	promoter-TSS (NR_106130)	-639.0	NR_106130	102466843.0		NR_106130	ENSMUSG00000098285	Mir7670	Gm27707|mmu-mir-7670	microRNA 7670	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-18187252-2	chr14	18187152	18187352	+	763.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51854.0	NM_011584	353187.0	Mm.26587	NM_011584	ENSMUSG00000021775	Nr1d2	RVR|Rev-erb	nuclear receptor subfamily 1, group D, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-103826131-4	chr14	103826035	103826235	+	886.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276296, intron 1 of 7)	intron (NM_001276296, intron 1 of 7)	17566.0	NM_007904	13618.0	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-86078920-4	chr5	86078889	86079089	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310639, intron 2 of 7)	intron (NM_001310639, intron 2 of 7)	7243.0	NM_001310639	56792.0	Mm.131237	NM_019992	ENSMUSG00000029254	Stap1	AI586015|Brdg1|STAP-1	signal transducing adaptor family member 1	protein-coding	5.45702373939853	5.52700761722932	4.7590910553998	5.93502490549911	4.653250534612	6.04872474925529	5.01528929238054	5.5349139995404	-0.0881185980298804	0.803870766881658	0.998431161219273
Merged-chr6-108428589-3	chr6	108428492	108428692	+	816.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 40 of 61)	intron (NM_010585, intron 40 of 61)	-61151.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-28514675-4	chr2	28514559	28514759	+	842.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009058, intron 1 of 17)	intron (NM_009058, intron 1 of 17)	1492.0	NM_001145834	19730.0	Mm.5236	NM_009058	ENSMUSG00000026821	Ralgds	Gnds|Rgds|mKIAA1308	ral guanine nucleotide dissociation stimulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-144232143-4	chr3	144232037	144232237	+	959.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26882.0	NM_010723	16911.0	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-55621456-2	chr5	55621356	55621556	+	699.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	1271464.0	NR_038045	330086.0	Mm.254449	NM_177871	ENSMUSG00000105912	Gm10440	D130065D13	predicted gene 10440	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-98922319-3	chr4	98922203	98922403	+	750.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1507.0	NM_001301414	230484.0	Mm.371692	NM_146144	ENSMUSG00000028560	Usp1	-	ubiquitin specific peptidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-6241964-4	chr18	6241872	6242072	+	999.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008448)	promoter-TSS (NM_008448)	-448.0	NM_008448	16573.0	Mm.223744	NM_008448	ENSMUSG00000006740	Kif5b	AL022807|Khc|Khcs|Kns1|Ukhc	kinesin family member 5B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-95807593-4	chr8	95807477	95807677	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178078)	promoter-TSS (NM_178078)	-115.0	NM_001205226	234594.0	Mm.259220	NM_153164	ENSMUSG00000036550	Cnot1	6030411K04Rik|AA815922|D830048B13	CCR4-NOT transcription complex, subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-9392025-2	chr14	9391925	9392125	+	815.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR24|LTR|ERV1	-492070.0	NR_030680	100042415.0	Mm.235938	NR_030680	ENSMUSG00000089686	Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-37967848-2	chr18	37967748	37967948	+	673.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_175684, exon 5 of 20)	exon (NM_175684, exon 5 of 20)	1883.0	NM_175684	319262.0	Mm.285060	NM_175684	ENSMUSG00000038524	Fchsd1	A030002D08Rik	FCH and double SH3 domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-184478681-2	chr1	184478581	184478781	+	616.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	79010.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-78918405-4	chr12	78918312	78918512	+	965.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11474.0	NM_013738	27260.0	Mm.103380	NM_013738	ENSMUSG00000021118	Plek2	-	pleckstrin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-75342980-4	chr18	75342871	75343071	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	24117.0	NR_155535	102636262.0	Mm.421168	NR_155535		Gm20544	-	predicted gene 20544	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-13706305-2	chr16	13706205	13706405	+	574.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	-23531.0	NR_040574	76684.0	Mm.491043	NR_040574	ENSMUSG00000086550	Pla2g10os	1810007I06Rik	phospholipase A2, group X, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101219727-2	chr15	101219627	101219827	+	554.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-1520.0	NR_045996	105968.0	Mm.120798	NR_045996	ENSMUSG00000115944	AU021063	-	expressed sequence AU021063	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-131874087-4	chr4	131873983	131874183	+	999.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020587, intron 1 of 5)	CpG	444.0	NM_020587	57317.0	Mm.2478	NM_020587	ENSMUSG00000028911	Srsf4	5730499P16Rik|AW550192|MNCb-2616|SRp75|Sfrs4	serine/arginine-rich splicing factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111574439-4	chr12	111574349	111574549	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045295)	promoter-TSS (NR_045295)	-47.0	NR_045295	100504687.0	Mm.26072	NR_045295	ENSMUSG00000096995	2810029C07Rik	AU017849	RIKEN cDNA 2810029C07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141640388-2	chr4	141640314	141640514	+	732.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347237, intron 5 of 18)	intron (NM_001347237, intron 5 of 18)	-16580.0	NM_001013780	384071.0	Mm.295682	NM_001013780	ENSMUSG00000040740	Slc25a34	Gm1369	solute carrier family 25, member 34	protein-coding	-1.26763528530823	-1.24004623050697	-1.25047066243561	-1.25903360120048	-1.26719213811538	-1.23778721262148	-1.08408689508627	-0.827346378697204	2.46274650016729	0.458074601718309	1
Merged-chr8-120794500-2	chr8	120794400	120794600	+	592.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55861.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133633557-4	chr4	133633457	133633657	+	994.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001017968)	promoter-TSS (NM_001017968)	-128.0	NM_001017968	503610.0	Mm.331948	NM_001017968	ENSMUSG00000037553	Zdhhc18	-	zinc finger, DHHC domain containing 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80199170-3	chr7	80199075	80199275	+	619.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360135, intron 1 of 13)	intron (NM_001360135, intron 1 of 13)	734.0	NM_001360135	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-84220892-1	chr3	84220792	84220992	+	1000.0	f1_c57bl6.idr	promoter-TSS (NM_030706)	promoter-TSS (NM_030706)	-15.0	NM_030706	80890.0	Mm.44876	NM_030706	ENSMUSG00000027993	Trim2	mKIAA0517|narf	tripartite motif-containing 2	protein-coding	2.85578059690139	2.10645891129337	2.54230842609511	1.98497635161372	2.8188460231409	2.12125709341417	2.05421241478232	1.99458162096713	-0.275017430348853	0.746736073884067	0.998431161219273
Merged-chr4-53012068-7	chr4	53011971	53012171	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025623, intron 1 of 5)	CpG	191.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	6.51152022703969	6.33479380722051	6.59325548289458	6.46584472530115	7.23514591288921	6.89952443719801	7.38497277760665	7.03284907576185	0.71222516735563	9.96595775262334e-05	0.00309230891412003
Merged-chr18-9709073-2	chr18	9708973	9709173	+	847.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_130449, intron 1 of 9)	intron (NM_130449, intron 1 of 9)	1425.0	NM_130449	140792.0	Mm.218571	NM_130449	ENSMUSG00000036103	Colec12	CL-P1|SRCL|Scara4	collectin sub-family member 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80638597-2	chr7	80638494	80638694	+	677.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_040343, intron 2 of 4)	intron (NR_040343, intron 2 of 4)	2577.0	NR_040343	100504375.0	Mm.322881	NR_040343	ENSMUSG00000084821	Gm15880	-	predicted gene 15880	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-16038033-3	chr19	16037944	16038144	+	826.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52969.0	NR_045355	100502653.0	Mm.149980	NR_045355	ENSMUSG00000097557	C130060C02Rik	-	RIKEN cDNA C130060C02 gene	ncRNA	2.96699636186428	2.59575414728671	2.49907366208846	3.80941773289043	1.45569571471891	3.69804390773708	3.57759029759917	3.87860480777295	0.53315296365941	0.486380431583245	0.932503166794264
Merged-chr7-17062662-2	chr7	17062562	17062762	+	889.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162950)	promoter-TSS (NM_001162950)	-235.0	NM_001162950	53417.0	Mm.135110	NM_016868	ENSMUSG00000004328	Hif3a	Ipas|MOP7|NEPAS|bHLHe17	hypoxia inducible factor 3, alpha subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-31328007-4	chr3	31327902	31328102	+	924.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17683.0	NM_172861	241919.0	Mm.285366	NM_172861	ENSMUSG00000069072	Slc7a14	A930013N06|BC061928	solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-54387890-3	chr14	54387762	54387962	+	856.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011405, intron 4 of 11)	intron (NM_011405, intron 4 of 11)	21610.0	NM_001253680	20540.0	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	2.26545727879122	2.40384566986916	1.47821353534978	2.72831845851303	3.28912104186531	2.57054446613049	2.61083613814382	3.33719077746266	1.39473961591983	0.0776003871110575	0.423846484624492
Merged-chr6-8663138-3	chr6	8663026	8663226	+	778.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252266, intron 7 of 11)	intron (NM_001252266, intron 7 of 11)	95332.0	NM_001252266	15893.0	Mm.275683	NM_010492	ENSMUSG00000062995	Ica1	69kDa|ICA69	islet cell autoantigen 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-134854345-3	chr4	134854243	134854443	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355501)	promoter-TSS (NM_001355501)	-998.0	NM_025382	66146.0	Mm.99793	NM_025382	ENSMUSG00000028826	Tmem57	1110007C24Rik|9230118A01Rik|AI317300|AI606104|C61|Maco1	transmembrane protein 57	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-40823722-2	chr17	40823622	40823822	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011269, intron 1 of 9)	MER20|DNA|hAT-Charlie	12573.0	NM_011269	19743.0	Mm.12961	NM_011269	ENSMUSG00000023926	Rhag	CD241|Rh50|Rh50A	Rhesus blood group-associated A glycoprotein	protein-coding	-2.18138529563533	-2.15523716995652	-2.1631445789866	-2.16963996020037	-2.05513010215571	-2.15352360143315	-2.16135451490766	-2.16847729006863	0.759018020146679	0.829933115115583	1
Merged-chr9-57510910-4	chr9	57510818	57511018	+	800.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	6816.0	NM_133982	102614.0	Mm.274421	NM_133982	ENSMUSG00000062309	Rpp25	AI851155	ribonuclease P/MRP 25 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80558023-2	chr10	80557923	80558123	+	730.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025852, intron 1 of 14)	intron (NM_025852, intron 1 of 14)	3537.0	NM_025852	66932.0	Mm.1116	NM_025852	ENSMUSG00000047417	Rexo1	1700021P10Rik|2610511M11Rik|AW050347|EloA-BP1|Rex1|Tceb3bp1	REX1, RNA exonuclease 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-36248117-7	chr8	36248009	36248209	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081150, intron 1 of 11)	CpG	1407.0	NM_001081150	244421.0	Mm.324032	NM_001081150	ENSMUSG00000039633	Lonrf1	-	LON peptidase N-terminal domain and ring finger 1	protein-coding	4.10219516304644	4.27698245635904	5.07102732549147	4.20566534996473	4.7251373028002	4.95250061102294	5.4559582928508	3.81844131218344	0.474839159685233	0.273021957498844	0.776472717058016
Merged-chr19-5751922-4	chr19	5751812	5752012	+	921.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008520, intron 16 of 27)	intron (NM_008520, intron 16 of 27)	11008.0	NM_008520	16998.0	Mm.182396	NM_008520	ENSMUSG00000024940	Ltbp3	Ltbp2|mFLJ00070	latent transforming growth factor beta binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81015320-2	chr15	81015220	81015420	+	977.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001082536, intron 13 of 13)	intron (NM_001082536, intron 13 of 13)	37555.0	NM_134091	105835.0	Mm.274943	NM_134091	ENSMUSG00000042303	Sgsm3	1810012I01Rik|AI428557|BB175482|Cip85|R75178|RUSC3|Rutbc3	small G protein signaling modulator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-116865577-4	chr3	116865480	116865680	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009146, intron 1 of 16)	(TCTG)n|Simple_repeat|Simple_repeat	3900.0	NM_009146	20321.0	Mm.66293	NM_009146	ENSMUSG00000033386	Frrs1	AI131732|Sdfr2	ferric-chelate reductase 1	protein-coding	3.64062143988414	1.70423899308486	3.29855901934419	2.93601591308444	3.46425900626903	2.91687150920879	3.40378615867304	2.95140876871955	0.209415872448531	0.765425121258323	0.998431161219273
Merged-chr8-80952470-4	chr8	80952358	80952558	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	62448.0	NM_027554	74841.0	Mm.246018	NM_027554	ENSMUSG00000038250	Usp38	4631402N15Rik|4833420O05Rik|AA536967|AU044701|AW544820|mKIAA1891	ubiquitin specific peptidase 38	protein-coding	6.66379624959656	6.72478481080057	7.28043546855778	7.08443693372236	6.54261116083795	6.71724867904892	7.38790905329352	6.4213618590908	-0.152066461649418	0.506919704708989	0.942956808573505
Merged-chr7-143021538-4	chr7	143021432	143021632	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_110354)	TTS (NR_110354)	15873.0	NM_001128081	27027.0	Mm.28172	NM_020286	ENSMUSG00000000244	Tspan32	AW208513|Art-1|BB235973|D7Wsu37e|Phemx|Tssc6	tetraspanin 32	protein-coding	0.0871880565272937	0.123059014749164	0.351327198977088	1.68405107450984	0.0895164664072216	0.387716041770236	0.114174156284815	0.518065789397154	-2.30087373234236	0.221308668117154	0.71266593498321
Merged-chr4-38478757-1	chr4	38478657	38478857	+	703.5	f0_balb.idr	Intergenic	Intergenic	376726.0	NR_151606	102636968.0	Mm.136083	NR_151606	ENSMUSG00000085632	Gm12381	-	predicted gene 12381	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34850304-4	chr17	34850208	34850408	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001045864)	promoter-TSS (NM_001045864)	-83.0	NM_138580	27632.0	Mm.653	NM_138580	ENSMUSG00000024369	Nelfe	D17H6S45|NELF-E|RD|Rdbp	negative elongation factor complex member E, Rdbp	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52588604-2	chr13	52588504	52588704	+	639.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001198977, intron 1 of 13)	intron (NM_001198977, intron 1 of 13)	5167.0	NM_001198977	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-65924860-2	chr18	65924760	65924960	+	745.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14229.0	NM_013833	19434.0	Mm.431047	NM_013833	ENSMUSG00000024518	Rax	7530406A22Rik|E130303K03Rik|Rx|ey-1|ey1	retina and anterior neural fold homeobox	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-108348729-2	chr9	108348629	108348829	+	613.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011678, intron 1 of 21)	intron (NM_011678, intron 1 of 21)	898.0	NM_011678	22258.0	Mm.3974	NM_011678	ENSMUSG00000032612	Usp4	F730026I20Rik|Unp|mKIAA4155	ubiquitin specific peptidase 4 (proto-oncogene)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-19415802-4	chr14	19415708	19415908	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GSAT_MM|Satellite|Satellite	186779.0	NM_001024706	432825.0	Mm.327147	NM_001024706	ENSMUSG00000095024	Gm5458	EG432825	predicted gene 5458	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-82099412-3	chr11	82099322	82099522	+	909.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB2|LINE|L1	-2423.0	NM_011331	20293.0	Mm.867	NM_011331	ENSMUSG00000035352	Ccl12	MCP-5|Scya12	chemokine (C-C motif) ligand 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75324623-4	chr11	75324530	75324730	+	858.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026653, intron 5 of 16)	Lx8|LINE|L1	23753.0	NM_001164223	68275.0	Mm.102574	NM_026653	ENSMUSG00000000751	Rpa1	5031405K23Rik|70kDa|AA589576|AW557552|RF-A|RP-A|Rpa	replication protein A1	protein-coding	3.48895953795982	3.68399894771358	3.82636565574622	3.23181909502092	3.32334407407476	2.8916149932138	3.34991631203014	2.70372365153738	-0.763218601062937	0.180372871719016	0.652496597452689
Merged-chr19-61018082-3	chr19	61017966	61018166	+	710.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018869, intron 2 of 15)	MTE2b|LTR|ERVL-MaLR	122774.0	NR_131956	414758.0	Mm.100056	NM_001001737	ENSMUSG00000074733	Zfp950	5830428H23Rik|AU016073|BC055757|Gm34518|Zfp826|mszf84	zinc finger protein 950	protein-coding	0.829921924650904	1.54744301029529	0.8759676704859	2.1656284971175	1.50188606199994	2.26559106554143	0.880707414336825	1.44933421576781	0.384766777698099	0.774421303136074	0.998431161219273
Merged-chr12-87330470-1	chr12	87330370	87330570	+	563.0	f0_c57.idr	intron (NM_011479, intron 9 of 11)	intron (NM_011479, intron 9 of 11)	-30765.0	NM_001290302	217738.0	Mm.219363	NM_001290302	ENSMUSG00000050671	Ism2	Gm264|Thsd3	isthmin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-48624988-2	chr13	48624888	48625088	+	601.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_207232, intron 1 of 9)	MIRb|SINE|MIR	684.0	NM_207232	218232.0	Mm.315089	NM_207232	ENSMUSG00000038042	Ptpdc1	AI843923|AW456874|Naa-1|Ptpcd1	protein tyrosine phosphatase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81494052-2	chr10	81493952	81494152	+	646.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_134009, intron 1 of 13)	intron (NM_134009, intron 1 of 13)	2311.0	NM_134009	103425.0	Mm.302791	NM_134009	ENSMUSG00000020238	Ncln	3100002P13Rik|AW120537	nicalin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-46905893-4	chr1	46905793	46905993	+	985.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356417, intron 1 of 10)	intron (NM_001356417, intron 1 of 10)	19883.0	NM_001356417	227059.0	Mm.233889	NM_172653	ENSMUSG00000025986	Slc39a10	2900042E17Rik|5430433I10|Zip10|mKIAA1265	solute carrier family 39 (zinc transporter), member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-56813711-4	chr14	56813597	56813797	+	943.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_152252, exon 1 of 1)	non-coding (NR_152252, exon 1 of 1)	1708.0	NR_152252	100503842.0	Mm.297636	NR_152252	ENSMUSG00000100017	2410022M11Rik	-	RIKEN cDNA 2410022M11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-107727165-2	chr13	107727065	107727265	+	737.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_145456, exon 15 of 15)	exon (NM_145456, exon 15 of 15)	39768.0	NR_045900	72257.0	Mm.234155	NR_045900	ENSMUSG00000102000	1700006H21Rik	-	RIKEN cDNA 1700006H21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-45981215-4	chr4	45981104	45981304	+	999.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355189, intron 1 of 16)	intron (NM_001355189, intron 1 of 16)	8373.0	NM_001355189	100121.0	Mm.275413	NM_146142	ENSMUSG00000035517	Tdrd7	5730495N10Rik|AI447470|PCTAIRE2BP	tudor domain containing 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-145616685-2	chr6	145616585	145616785	+	879.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_009449, intron 1 of 4)	intron (NM_009449, intron 1 of 4)	722.0	NM_009449	22147.0	Mm.270295	NM_009449	ENSMUSG00000067338	Tuba3b	M[a]7|Tuba7	tubulin, alpha 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-61041403-1	chr14	61041303	61041503	+	677.0	f1_balb.idr	intron (NM_013869, intron 1 of 9)	intron (NM_013869, intron 1 of 9)	-3416.0	NM_001164155	29820.0	Mm.281356	NM_013869	ENSMUSG00000060548	Tnfrsf19	AL023044|AW123854|TAJ|TAJ-ALPHA|TRADE|Troy	tumor necrosis factor receptor superfamily, member 19	protein-coding	0.0767340892956841	-0.170846014162832	-0.175476595539215	-0.179044820332823	0.456707088579066	0.323084755609303	-0.174455847384247	-0.178421730471684	2.22944129099784	0.354319261424331	1
Merged-chr7-16011852-2	chr7	16011752	16011952	+	787.416687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12357.0	NM_001081418	243842.0	Mm.440249	NM_001081418	ENSMUSG00000070808	Bicra	Gltscr1	BRD4 interacting chromatin remodeling complex associated protein	protein-coding	-0.0805183666927052	-0.0612902036834787	0.125625680343589	-0.0724030089624674	0.537714115480161	0.827121498396382	-0.0661642296503985	-0.0715530470564261	3.25055232327336	0.145525500155974	1
Merged-chr10-44459468-4	chr10	44459452	44459652	+	973.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007548)	promoter-TSS (NM_007548)	-804.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-100885773-3	chr12	100885669	100885869	+	756.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177674, intron 2 of 2)	intron (NM_001177674, intron 2 of 2)	13755.0	NM_001177674	238377.0	Mm.32160	NM_175493	ENSMUSG00000047415	Gpr68	BB131428|Ogr1	G protein-coupled receptor 68	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-6441996-4	chr4	6441934	6442134	+	679.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010945, intron 1 of 30)	intron (NM_010945, intron 1 of 30)	12237.0	NM_010945	18201.0	Mm.3059	NM_010945	ENSMUSG00000028245	Nsmaf	AA959567|C630007J05|Fan	neutral sphingomyelinase (N-SMase) activation associated factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-155116713-3	chr4	155116614	155116814	+	963.2000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356327, intron 10 of 12)	intron (NM_001356327, intron 10 of 12)	30110.0	NM_001356327	76866.0	Mm.200590	NM_001081100	ENSMUSG00000029049	Morn1	2900057D20Rik|4930417P05Rik|AU042805	MORN repeat containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-17155131-2	chr9	17155031	17155231	+	586.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur1|LINE|L1	-776900.0	NM_001080814	270120.0	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT atypical cadherin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3745941-3	chr12	3745826	3746026	+	965.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162465, intron 12 of 17)	intron (NM_001162465, intron 12 of 17)	-61054.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35819531-3	chr17	35819423	35819623	+	716.799988	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2190.0	NM_133662	15937.0	Mm.25613	NM_133662	ENSMUSG00000003541	Ier3	AI663993|IEX-1|cI-3|gly96	immediate early response 3	protein-coding	1.42063042133591	1.337060008601	0.87042403902139	1.12675772952976	1.07292776126772	1.07467751939375	0.684566591413264	0.675880841816362	-1.53761468681675	0.292151364324651	0.796402318047675
Merged-chr17-69234332-1	chr17	69234232	69234432	+	549.0	f0_balb.idr	intron (NM_001355736, intron 3 of 21)	ORR1E|LTR|ERVL-MaLR	42874.0	NR_045428	69750.0	Mm.439063	NR_045428	ENSMUSG00000100572	2410021H03Rik	-	RIKEN cDNA 2410021H03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117654714-4	chr11	117654637	117654837	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198022, intron 1 of 21)	CpG	448.0	NM_198022	217351.0	Mm.40272	NM_198022	ENSMUSG00000025571	Tnrc6c	9930033H14Rik|mKIAA1582	trinucleotide repeat containing 6C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55793112-2	chr19	55793012	55793212	+	603.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001331146, intron 4 of 14)	intron (NM_001331146, intron 4 of 14)	51302.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117842180-3	chr10	117842088	117842288	+	910.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024457, intron 1 of 7)	intron (NM_024457, intron 1 of 7)	3786.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-91676194-2	chr6	91676094	91676294	+	577.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F2|SINE|Alu	-7873.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80129534-2	chr10	80129434	80129634	+	617.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001195268)	TTS (NM_001195268)	7853.0	NM_001195268	100503659.0	Mm.485395	NM_015761	ENSMUSG00000035640	Cbarp	9630008F14|Dos|R29144/1	calcium channel, voltage-dependent, beta subunit associated regulatory protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-50437926-4	chr16	50437842	50438042	+	997.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	T-rich|Low_complexity|Low_complexity	-5476.0	NM_001347240	70508.0	Mm.28940	NM_027444	ENSMUSG00000022641	Bbx	5530401J07Rik|5730403O13Rik	bobby sox HMG box containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-129401465-4	chr7	129401367	129401567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	144373.0	NM_001080963	381925.0	Mm.39184	NM_001080963	ENSMUSG00000070366	Plpp4	C030048B12Rik|Gm1090|Ppapdc1a	phospholipid phosphatase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-88259647-2	chr1	88259547	88259747	+	777.666626	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_198652, exon 8 of 8)	3' UTR (NM_198652, exon 8 of 8)	9761.0	NR_040291	78605.0	Mm.384762	NR_040291		6430706D22Rik	-	RIKEN cDNA 6430706D22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-58540591-3	chr4	58540489	58540689	+	774.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010336, intron 1 of 3)	intron (NM_010336, intron 1 of 3)	12704.0	NM_172989	14745.0	Mm.4772	NM_010336	ENSMUSG00000038668	Lpar1	AI326300|Edg2|Gpcr26|Kdt2|lpA1|vzg-1	lysophosphatidic acid receptor 1	protein-coding	2.51009691960647	3.05363110429375	3.44119992633403	1.82001022695776	2.99852190176689	2.84562689184022	3.46696747055688	2.88213581093969	0.407505220271509	0.57066466522175	0.962718661854691
Merged-chr4-63560986-3	chr4	63560874	63561074	+	746.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001356354, exon 2 of 10)	5' UTR (NM_001356354, exon 2 of 10)	747.0	NM_144905	230279.0	Mm.41523	NM_144905	ENSMUSG00000045917	Tmem268	6330416G13Rik|AW492431|bM230C2.2	transmembrane protein 268	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-84019665-2	chr12	84019565	84019765	+	877.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10163.0	NM_012006	26897.0	Mm.1978	NM_012006	ENSMUSG00000072949	Acot1	ACH2|CTE-1|CTE-I|Cte1|D12Ucla1	acyl-CoA thioesterase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-61903103-2	chr9	61903003	61903203	+	663.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11407.0	NM_018853	56040.0	Mm.3158	NM_018853	ENSMUSG00000007892	Rplp1	2410042H16Rik|Arpp1|C430017H15Rik	ribosomal protein, large, P1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-12776206-2	chr18	12776106	12776306	+	599.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252490, intron 4 of 13)	intron (NM_001252490, intron 4 of 13)	34851.0	NM_027687	71132.0	Mm.179740	NM_027687	ENSMUSG00000024430	Cabyr	1700016C01Rik|4933421A18Rik|CBP86|FSP-2	calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-113172650-1	chr11	113172550	113172750	+	1000.0	f0_c57.idr	intron (NR_015556, intron 1 of 2)	intron (NR_015556, intron 1 of 2)	29188.0	NR_015556	72386.0	Mm.266961	NR_015556	ENSMUSG00000087259	2610035D17Rik	-	RIKEN cDNA 2610035D17 gene	ncRNA	0.0941311542750532	0.274443753467568	0.597404370020743	0.0993501315121848	0.219370401371136	0.107642526621736	0.509042115941891	0.367788312677425	0.177531018829824	0.928241235423924	1
Merged-chr12-98734652-4	chr12	98734536	98734736	+	988.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011877)	promoter-TSS (NM_011877)	9.0	NM_011877	24000.0	Mm.4420	NM_011877	ENSMUSG00000021009	Ptpn21	PTPD1|PTPRL10	protein tyrosine phosphatase, non-receptor type 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133469258-3	chr4	133469138	133469338	+	735.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10895.0	NM_175307	100342.0	Mm.204656	NM_175307	ENSMUSG00000046694	Fam46b	4732473B16Rik|AU045678|AU046069	family with sequence similarity 46, member B	protein-coding	1.50335643115266	0.968254463890581	1.35070447147092	1.80434842750153	1.10454423400672	1.21121893144882	1.65180154683104	2.14639957191312	0.529109930651196	0.662584313126301	0.991056031673253
Merged-chr2-43794222-3	chr2	43794170	43794370	+	756.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301831, intron 2 of 14)	intron (NM_001301831, intron 2 of 14)	45446.0	NM_001301831	76117.0	Mm.217350	NM_153820	ENSMUSG00000049744	Arhgap15	5830480G12Rik	Rho GTPase activating protein 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-38211642-4	chr2	38211543	38211743	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146122, intron 2 of 21)	ORR1F|LTR|ERVL-MaLR	75741.0	NM_146122	227801.0	Mm.314245	NM_146122	ENSMUSG00000035392	Dennd1a	6030446I19Rik|connecdenn	DENN/MADD domain containing 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129884270-3	chr4	129884187	129884387	+	751.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21939.0	NR_045190	319894.0	Mm.59196	NR_045190	ENSMUSG00000086369	E330017L17Rik	-	RIKEN cDNA E330017L17 gene	ncRNA	-1.53362919331644	-1.50201671710775	-1.51157659084044	-1.08120497225282	-1.53141005593807	-1.49994505258991	-1.50941244497383	-1.51802371459528	-1.94474658522739	0.577200604274218	1
Merged-chr9-88966284-4	chr9	88966163	88966363	+	872.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	9343.0	NM_009742	12044.0	Mm.425593	NM_009742	ENSMUSG00000102037	Bcl2a1a	A1|BB218357|Bcl2a1|Bfl-1|Hbpa1	B cell leukemia/lymphoma 2 related protein A1a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-172364814-4	chr1	172364686	172364886	+	993.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039484, intron 1 of 1)	intron (NM_001039484, intron 1 of 1)	-11745.0	NM_026234	67556.0	Mm.26612	NM_026234	ENSMUSG00000050229	Pigm	4933437L05Rik|AI644422|AV302080|C920011G20Rik	phosphatidylinositol glycan anchor biosynthesis, class M	protein-coding	0.8717448552747	1.95054241015746	0.724100718781851	1.0781877975631	1.16027431916817	1.16359102336412	1.2725597536322	0.91673339218226	-0.530565982641395	0.69306570529174	0.99740158133691
Merged-chr16-96146695-2	chr16	96146595	96146795	+	835.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_207301, intron 1 of 4)	B3|SINE|B2	1276.0	NM_207301	71446.0	Mm.255063	NM_207301	ENSMUSG00000023147	Wrb	5530402J05Rik|C030018G21Rik|Chd5	tryptophan rich basic protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-84573371-1	chr10	84573271	84573471	+	591.0	f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-3576.0	NM_146008	216198.0	Mm.296142	NM_146008	ENSMUSG00000020034	Tcp11l2	E430026E19Rik	t-complex 11 (mouse) like 2	protein-coding	-0.960356745253565	-0.944632716951783	-0.954778622669631	-0.429329592755357	-0.690970668601764	-0.942053516937827	-0.953840318496883	-0.956512928848077	-1.03243114258619	0.744669050894141	1
Merged-chr11-96837566-3	chr11	96837466	96837666	+	731.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7598.0	NM_008686	18023.0	Mm.6743	NM_008686	ENSMUSG00000038615	Nfe2l1	AA408798|AW212678|LCR-F1|Lcrf1|NRF1|TCF-11|TCF11	nuclear factor, erythroid derived 2,-like 1	protein-coding	3.4740308515269	2.56111261785017	3.06284702008096	3.22217571001842	3.15597698732648	1.97871367929526	2.76720375386351	3.08060464278284	-0.525290068128005	0.447290753609863	0.914498173479176
Merged-chr5-43910560-2	chr5	43910460	43910660	+	760.666626	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007646, exon 8 of 8)	3' UTR (NM_007646, exon 8 of 8)	41751.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-57363163-4	chr16	57363060	57363260	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 1 of 4)	RMER17B2|LTR|ERVK	9883.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-86213363-6	chr15	86213216	86213416	+	964.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1143.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-127089226-1	chr2	127089126	127089326	+	1000.0	f1_c57bl6.idr	intron (NM_026678, intron 5 of 7)	intron (NM_026678, intron 5 of 7)	18569.0	NM_026678	109778.0	Mm.22028	NM_026678	ENSMUSG00000001999	Blvra	0610006A11Rik|2500001N03Rik|Blvr	biliverdin reductase A	protein-coding	0.478988304712818	0.955451502211153	0.506632895436076	1.46439984766142	0.481612849298851	0.964940189403966	0.509526134159631	1.71360998715146	0.429420796111679	0.799698441650667	0.998431161219273
Merged-chr10-71401534-2	chr10	71401434	71401634	+	714.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53771.0	NM_027184	69718.0	Mm.245867	NM_027184	ENSMUSG00000060733	Ipmk	2410017C19Rik|AA408208|Impk	inositol polyphosphate multikinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-120605864-4	chr5	120605781	120605981	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029408, intron 4 of 4)	intron (NM_029408, intron 4 of 4)	6708.0	NM_029096	100764.0	Mm.9654	NM_029096	ENSMUSG00000029600	Rita1	1110008J03Rik|AI853657|C86297|Rita	RBPJ interacting and tubulin associated 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-57142265-2	chr9	57142165	57142365	+	963.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_028636)	TTS (NM_028636)	6040.0	NM_028347	72774.0	Mm.35749	NM_028347	ENSMUSG00000032298	Neil1	2810450N13Rik|NEH1|Nei1	nei endonuclease VIII-like 1 (E. coli)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-25829012-4	chr17	25829003	25829203	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028101)	promoter-TSS (NM_028101)	60.0	NM_028101	72106.0	Mm.277599	NM_028101	ENSMUSG00000025736	Jmjd8	2610003J06Rik	jumonji domain containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-108232317-3	chr3	108232217	108232417	+	656.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5718.0	NM_008596	17306.0	Mm.316885	NM_008596	ENSMUSG00000027887	Sypl2	AI552439|Mg29	synaptophysin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-70195517-4	chr10	70195411	70195611	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR25A|LTR|ERVK	-9153.0	NM_001304739	69563.0	Mm.64672	NM_001304739	ENSMUSG00000019933	Mrln	2310015B20Rik|Linc-RAM|Mln	myoregulin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-25488644-2	chr10	25488544	25488744	+	656.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358754, intron 11 of 16)	intron (NM_001358754, intron 11 of 16)	47628.0	NM_001195596	100504474.0	Mm.46323	NM_001195596	ENSMUSG00000096546	Smlr1	2010003K15Rik	small leucine-rich protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-31699140-2	chr5	31699040	31699240	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_181280, intron 1 of 12)	intron (NM_181280, intron 1 of 12)	1090.0	NM_144541	107976.0	Mm.482126	NM_144541	ENSMUSG00000052139	Babam2	6030405P19Rik|AI429776|B830038C02Rik|Bre	BRISC and BRCA1 A complex member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111676562-4	chr12	111676468	111676668	+	932.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1537.0	NM_001099792	328162.0	Mm.425747	NM_177374	ENSMUSG00000060950	Trmt61a	6720458F09Rik|AI606093|Gcd14|Trm61	tRNA methyltransferase 61A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105340510-2	chr8	105340410	105340610	+	757.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177699, intron 1 of 21)	intron (NM_177699, intron 1 of 21)	7460.0	NM_177699	234686.0	Mm.87724	NM_177699	ENSMUSG00000014778	Fhod1	BC017144|FHOS|FHOS1	formin homology 2 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-116085641-3	chr3	116085536	116085736	+	951.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44052.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-45098268-2	chr2	45098168	45098368	+	636.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_149354, intron 2 of 2)	intron (NR_149354, intron 2 of 2)	12009.0	NM_001289521	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-120314120-2	chr2	120314020	120314220	+	729.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024145)	promoter-TSS (NM_001024145)	45.0	NM_001024145	271844.0	Mm.24880	NM_001024145	ENSMUSG00000046971	Pla2g4f	4732472I07Rik|Gm647|Pla2zeta	phospholipase A2, group IVF	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-121103541-2	chr8	121103441	121103641	+	722.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172761, intron 4 of 7)	intron (NM_172761, intron 4 of 7)	4838.0	NM_172761	234814.0	Mm.31690	NM_172761	ENSMUSG00000031816	Mthfsd	AW049977|BC052066|C920004D05	methenyltetrahydrofolate synthetase domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-126599606-4	chr3	126599499	126599699	+	676.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025438, intron 2 of 18)	intron (NM_001025438, intron 2 of 18)	2648.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	4.84938796901585	3.82912522476241	5.22087949955921	4.41685408680219	3.65768651069485	4.55717925660079	3.63156319615315	4.38973906869373	-0.721585340727708	0.110717294998551	0.520954977776112
Merged-chr12-103371955-3	chr12	103371872	103372072	+	644.722229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4922.0	NR_033587	68149.0	Mm.127378	NM_026580	ENSMUSG00000021203	Otub2	2010015L18Rik|4930586I02Rik|AI413508|AW557219|OTB2|OTU2	OTU domain, ubiquitin aldehyde binding 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-32504124-2	chr9	32504024	32504224	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008026, intron 1 of 8)	intron (NM_008026, intron 1 of 8)	37328.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-125324716-4	chr10	125324630	125324830	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358496, intron 1 of 5)	MLT1B-int|LTR|ERVL-MaLR	4233.0	NM_011391	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97440265-5	chr11	97440179	97440379	+	807.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-9881.0	NM_021493	58996.0	Mm.394118	NM_021493	ENSMUSG00000049807	Arhgap23	A330041B18Rik	Rho GTPase activating protein 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-108077553-2	chr4	108077453	108077653	+	722.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_011327, intron 10 of 15)	MERV1_LTR|LTR|ERV1	-9804.0	NR_105823	102465213.0		NR_105823	ENSMUSG00000098980	Mir6397	Gm28004|mmu-mir-6397	microRNA 6397	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-78191924-4	chr9	78191831	78192031	+	835.770813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010357)	promoter-TSS (NM_010357)	-35.0	NM_010357	14860.0	Mm.2662	NM_010357	ENSMUSG00000032348	Gsta4	GST5.7|mGsta4	glutathione S-transferase, alpha 4	protein-coding	3.44751332121797	1.75687569915287	3.87664522813655	2.07040070872561	3.78255714352157	1.45741986943092	2.16008198114101	2.54635644138864	-0.481610688812539	0.59657250982637	0.971586575449917
Merged-chr6-48086649-4	chr6	48086548	48086748	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347142)	promoter-TSS (NM_001347142)	-55.0	NM_001362062	69228.0	Mm.207555	NM_001163475	ENSMUSG00000057691	Zfp746	2810407L07Rik|AI317225|Znf746	zinc finger protein 746	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-164877500-2	chr2	164877296	164877496	+	862.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1972.0	NM_146129	228866.0	Mm.241134	NM_146129	ENSMUSG00000039849	Pcif1	2310022K11Rik|C20orf67|F730014I05Rik	PDX1 C-terminal inhibiting factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-36155596-2	chr12	36155492	36155692	+	638.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_025840, intron 1 of 11)	intron (NM_025840, intron 1 of 11)	1233.0	NM_025840	66912.0	Mm.288669	NM_025840	ENSMUSG00000020547	Bzw2	1110001I24Rik|Bdm2|HSPC028	basic leucine zipper and W2 domains 2	protein-coding	-1.17367364971587	-1.14665061133654	-1.15856004380685	-1.16834280623128	-1.17310571790619	-1.14406978763884	-0.42938571406771	-1.16659169643457	2.89727187181404	0.396361616615464	1
Merged-chr8-126797831-4	chr8	126797728	126797928	+	793.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-51192.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-59323267-4	chr10	59323156	59323356	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001316371)	promoter-TSS (NM_001316371)	-40.0	NM_001316371	18451.0	Mm.2212	NM_011030	ENSMUSG00000019916	P4ha1	AL022634|P4ha	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-6383622-4	chr4	6383518	6383718	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016807, intron 4 of 8)	RLTR49|LTR|ERVK	17938.0	NM_001098227	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-66511017-3	chr9	66510866	66511066	+	677.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_175206, exon 2 of 2)	3' UTR (NM_175206, exon 2 of 2)	3627.0	NM_175206	74165.0	Mm.297998	NM_175206	ENSMUSG00000050503	Fbxl22	1110004B15Rik	F-box and leucine-rich repeat protein 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166784557-2	chr2	166784457	166784657	+	548.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-9210.0	NM_023815	76367.0	Mm.330796	NM_023815	ENSMUSG00000042854	Trp53rkb	2810408M09Rik|4933401B08Rik|5630401H01Rik|Nori-2|PRPK|Tp53rk|Trp53rk|Trp53tk|mNori-2p	transformation related protein 53 regulating kinase B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-109467457-4	chr3	109467289	109467489	+	920.0166630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020505, intron 2 of 26)	intron (NM_020505, intron 2 of 26)	-106618.0	NM_146139	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	4.63692611988555	4.23308659801677	3.56239806914586	4.04725494884702	4.50522714256522	3.61717057031594	4.06394395056581	4.12495877284097	-0.0782529719683079	0.86388138116288	0.998431161219273
Merged-chr2-6612780-2	chr2	6612680	6612880	+	545.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110232, intron 7 of 15)	intron (NM_001110232, intron 7 of 15)	108882.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-15158806-2	chr3	15158706	15158906	+	879.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F|LTR|ERVL-MaLR	173496.0	NM_001076679	751864.0	Mm.431296	NM_001076679	ENSMUSG00000078783	Gm9733	-	predicted gene 9733	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-156533689-4	chr1	156533595	156533795	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-25092.0	NM_009595	11352.0	Mm.329515	NM_009595	ENSMUSG00000026596	Abl2	AA536808|Abll|Arg	v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)	protein-coding	2.89114113716304	1.99498427969545	2.32037691259241	2.25508576284456	2.05239202883828	1.61744608789843	2.0925668553464	1.72521763955834	-1.32564625276019	0.141760971525473	0.58771532009766
Merged-chr17-12880355-4	chr17	12880256	12880456	+	844.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4322.0	NM_030726	80978.0	Mm.160368	NM_030726	ENSMUSG00000059408	Mrgprh	Gpr90|Mgrb|MrgH	MAS-related GPR, member H	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-45984588-4	chr19	45984482	45984682	+	969.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198296, intron 1 of 25)	MTC|LTR|ERVL-MaLR	-13555.0	NR_152221	100174921.0	Mm.487206	NR_152221		4930505N22Rik	-	RIKEN cDNA 4930505N22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111601279-2	chr12	111601179	111601379	+	763.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_021516, intron 2 of 16)	RMER15|LTR|ERVL	26769.0	NM_022801	17169.0	Mm.260504	NM_021516	ENSMUSG00000007411	Mark3	1600015G02Rik|A430080F22Rik|C-TAK1|ETK-1|ETK1|Emk2|MPK10	MAP/microtubule affinity regulating kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-92666168-4	chr1	92665930	92666130	+	899.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17189.0	NM_153114	260301.0	Mm.219545	NM_153114	ENSMUSG00000044055	Otos	OTOSP	otospiralin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-71760530-2	chr1	71760430	71760630	+	720.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	107195.0	NR_040308	100042814.0	Mm.405775	NR_040308	ENSMUSG00000073652	Apol7d	Gm15456	apolipoprotein L 7d	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-29488985-4	chr7	29488890	29489090	+	709.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081028, intron 2 of 22)	Charlie2a|DNA|hAT-Charlie	16470.0	NM_001081028	74206.0	Mm.447042	NM_001081028	ENSMUSG00000030583	Sipa1l3	2610511M17Rik	signal-induced proliferation-associated 1 like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-20301563-2	chr11	20301463	20301663	+	983.1666869999999	f1_balb.idr|f1_c57bl6.idr	TTS (NM_018861)	TTS (NM_018861)	31150.0	NM_018861	55963.0	Mm.6379	NM_018861	ENSMUSG00000020142	Slc1a4	ASCT-1|ASCT1|AW045657|SATT	solute carrier family 1 (glutamate/neutral amino acid transporter), member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-165717903-4	chr1	165717800	165718000	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9806.0	NM_178593	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-62720359-4	chr1	62720205	62720405	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077404, intron 2 of 16)	intron (NM_001077404, intron 2 of 16)	16988.0	NM_001077407	18187.0	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-60628029-4	chr13	60627912	60628112	+	999.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	25801.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-64085449-2	chr9	64085349	64085549	+	764.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_040743, intron 1 of 2)	intron (NR_040743, intron 1 of 2)	4688.0	NR_040743	76814.0	Mm.243771	NR_040743		Scarletltr	2600006L11Rik	Scarletltr, erythroid developmental long intergenic non-protein coding transcript	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-41935640-1	chr9	41935540	41935740	+	555.0	f1_c57bl6.idr	Intergenic	Intergenic	141573.0	NM_001357261	20660.0	Mm.121920	NM_011436	ENSMUSG00000049313	Sorl1	2900010L19Rik|AI596264|AW261561|LR11|SorLA|gp250|mSorLA	sortilin-related receptor, LDLR class A repeats-containing	protein-coding	-0.0632507374739326	0.688610083041756	-0.0518152629914396	-0.0561080630719799	0.330410269925549	-0.0450109797155146	0.423244983336741	-0.0553576085587969	-0.0228670885654211	0.991957299469846	1
Merged-chr5-140827617-3	chr5	140827511	140827711	+	628.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010302, intron 1 of 3)	intron (NM_010302, intron 1 of 3)	2820.0	NM_010302	14673.0	Mm.370185	NM_010302	ENSMUSG00000000149	Gna12	AI414047|AI504261|Galpha12	guanine nucleotide binding protein, alpha 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123064344-2	chr5	123064244	123064444	+	925.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11931.0	NM_001039723	330189.0	Mm.391872	NM_001039723	ENSMUSG00000054434	Tmem120b	-	transmembrane protein 120B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-74958736-2	chr15	74958636	74958836	+	980.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001164036, exon 4 of 4)	3' UTR (NM_001164036, exon 4 of 4)	3630.0	NM_001164040	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127030839-4	chr10	127030742	127030942	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025537)	promoter-TSS (NM_025537)	-28.0	NM_025537	66399.0	Mm.29900	NM_025537	ENSMUSG00000040521	Tsfm	2310050B20Rik|9430024O13Rik|EF-TS|EF-Tsmt	Ts translation elongation factor, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-112630191-2	chr12	112630075	112630275	+	992.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007421, intron 2 of 12)	B3|SINE|B2	10128.0	NM_007421	11565.0	Mm.3440	NM_007421	ENSMUSG00000011148	Adssl1	AI528595|Adss|Adss1	adenylosuccinate synthetase like 1	protein-coding	0.0575058617790296	0.0838121785046558	0.287240740045243	0.902445601614003	0.0591841153061229	1.13658321175058	0.077207517792889	0.0698561463399318	0.311547650979365	0.88184321688744	1
Merged-chr5-43106392-1	chr5	43106292	43106492	+	554.0	f1_c57bl6.idr	Intergenic	Intergenic	-127071.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	-0.986117776978398	-1.33156256825259	-1.34133402424827	-1.34936058913999	-1.21427833167172	-1.32944505297573	-1.33912198079506	-1.34792383786197	-0.98711403806483	0.775821656509867	1
Merged-chr1-93119075-4	chr1	93119010	93119210	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16130.0	NM_001276710	11611.0	Mm.7457	NM_016702	ENSMUSG00000026272	Agxt	AGT|Agt1|Agxt1|SPT	alanine-glyoxylate aminotransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-51931395-4	chr11	51931289	51931489	+	989.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4|SINE|ID	-36242.0	NM_029976	52626.0	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-40948423-4	chr4	40948306	40948506	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009736)	promoter-TSS (NM_009736)	-112.0	NM_001171739	12017.0	Mm.688	NM_009736	ENSMUSG00000028416	Bag1	BAG-1|Rap46	BCL2-associated athanogene 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-160367127-4	chr2	160367013	160367213	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010658)	promoter-TSS (NM_010658)	-48.0	NM_010658	16658.0	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-43602829-2	chr16	43602729	43602929	+	816.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_181058, intron 5 of 6)	intron (NM_181058, intron 5 of 6)	-37826.0	NR_030576	100124467.0		NR_030576	ENSMUSG00000076372	Mir568	Mirn568|mmu-mir-568	microRNA 568	ncRNA	0.567022573080819	0.116280676724446	0.110515363609626	0.1060664140421	0.820695732156031	0.474734512128012	0.290796122511013	0.106843709434386	1.48045270458318	0.471247618585212	1
Merged-chr8-108691989-4	chr8	108691892	108692092	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22652.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78720912-2	chr15	78720812	78721012	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER3|DNA|hAT-Charlie	-2141.0	NM_001358692	207393.0	Mm.323188	NM_183141	ENSMUSG00000043460	Elfn2	6330514E13|AW048948|BC094219|Lrrc62|Ppp1r29	leucine rich repeat and fibronectin type III, extracellular 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-82866094-1	chr10	82865994	82866194	+	688.0	f0_c57.idr	promoter-TSS (NM_025499)	promoter-TSS (NM_025499)	-532.0	NM_025499	66341.0	Mm.443284	NM_025499	ENSMUSG00000109864	Eid3	1700027M21Rik|NS4EB	EP300 interacting inhibitor of differentiation 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-90443710-4	chr7	90443592	90443792	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_145151, exon 1 of 1)	exon (NM_145151, exon 1 of 1)	911.0	NR_073438	233490.0	Mm.29496	NM_145151	ENSMUSG00000051451	Crebzf	1110034C16Rik|6330417B10Rik|LAZip|LAZipII|SMILE|Zf	CREB/ATF bZIP transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-60560747-4	chr18	60560644	60560844	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025776)	promoter-TSS (NM_025776)	-42.0	NM_025776	66810.0	Mm.275106	NM_025776	ENSMUSG00000024604	Rbm22	8430430L24Rik	RNA binding motif protein 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-102567779-5	chr4	102567704	102567904	+	918.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019840, intron 5 of 14)	intron (NM_019840, intron 5 of 14)	-2256.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52085252-4	chr13	52085156	52085356	+	818.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11485.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80135319-2	chr10	80135219	80135419	+	790.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_036582, intron 7 of 10)	intron (NR_036582, intron 7 of 10)	2068.0	NM_001195268	100503659.0	Mm.485395	NM_015761	ENSMUSG00000035640	Cbarp	9630008F14|Dos|R29144/1	calcium channel, voltage-dependent, beta subunit associated regulatory protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-17882081-2	chr5	17881981	17882181	+	677.0	f0_balb.idr|f0_c57.idr	intron (NM_001159558, intron 1 of 15)	intron (NM_001159558, intron 1 of 15)	6878.0	NM_001159558	12491.0	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 molecule	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-42713366-1	chr19	42713266	42713466	+	579.5	f0_balb.idr	Intergenic	Intergenic	39409.0	NM_029011	74580.0	Mm.329858	NM_029011	ENSMUSG00000060224	Pyroxd2	3830409H07Rik|4833409A17Rik	pyridine nucleotide-disulphide oxidoreductase domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-86381889-2	chr1	86381789	86381989	+	577.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6252.0	NM_010341	14767.0	Mm.389159	NM_010341	ENSMUSG00000026237	Nmur1	FM-3|Gpr66|NMU-R1|NMU1R|NmU-R	neuromedin U receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-62980643-3	chr18	62980539	62980739	+	769.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028017, intron 2 of 11)	intron (NM_028017, intron 2 of 11)	2723.0	NM_028017	108123.0	Mm.292687	NM_028017	ENSMUSG00000024581	Napg	2400003O04Rik|SNARE	N-ethylmaleimide sensitive fusion protein attachment protein gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-58410584-2	chr15	58410477	58410677	+	705.666626	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-4891.0	NM_145959	210998.0	Mm.3224	NM_145959	ENSMUSG00000037119	Fam91a1	AV220772|BC033609|D15Ertd621e|SKIN|mKIAA0493	family with sequence similarity 91, member A1	protein-coding	3.19117567802307	1.98118547476507	4.80879657353759	3.10042756500927	3.43819623887304	3.85577467795093	1.91720349585334	3.5445123116233	-0.465430453922642	0.538602996036233	0.954314144619457
Merged-chr5-105059826-2	chr5	105059726	105059926	+	719.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6265.0	NM_029509	76074.0	Mm.458519	NM_029509	ENSMUSG00000034438	Gbp8	5830443L24Rik|mGBP8	guanylate-binding protein 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-92732635-1	chr16	92732535	92732735	+	566.0	f0_balb.idr	intron (NM_001111022, intron 2 of 6)	intron (NM_001111022, intron 2 of 6)	-35306.0	NM_009821	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-149780064-6	chr4	149779946	149780146	+	996.2777710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-5779.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	3.14862287954678	2.52732563127614	2.58334303628407	2.93532291147396	2.97044435574866	2.6915337640355	3.35702558072177	2.38776656448242	0.136869799016006	0.84339881464471	0.998431161219273
Merged-chr10-7834511-4	chr10	7834397	7834597	+	970.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172785, intron 1 of 5)	intron (NM_172785, intron 1 of 5)	-1884.0	NR_039563	100628581.0		NR_039563	ENSMUSG00000093060	Mir5104	mir-5104|mmu-mir-5104|mu-mir-5104	microRNA 5104	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167062714-4	chr2	167062592	167062792	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_138563)	promoter-TSS (NR_138563)	-242.0	NR_138563	68949.0	Mm.391959	NM_001081005		Zfas1	1500012F01Rik|Zfos1	zinc finger, NFX1-type containing 1, antisense RNA 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-8495373-4	chr6	8495284	8495484	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13777.0	NR_040452	320312.0	Mm.374890	NR_040452	ENSMUSG00000087305	A430035B10Rik	2810488G03Rik	RIKEN cDNA A430035B10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-120948297-4	chr7	120948219	120948419	+	956.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_025298)	TTS (NM_025298)	30575.0	NM_001164096	26939.0	Mm.193632	NM_025298	ENSMUSG00000030880	Polr3e	RPC5|Sin	polymerase (RNA) III (DNA directed) polypeptide E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34307808-1	chr17	34307708	34307908	+	813.0	f1_c57bl6.idr	intron (NM_010382, intron 1 of 5)	intron (NM_010382, intron 1 of 5)	1941.0	NM_010382	14969.0	Mm.22564	NM_010382	ENSMUSG00000060586	H2-Eb1	Eb|H-2Eb|H2Eb|Ia-4|Ia4	histocompatibility 2, class II antigen E beta	protein-coding	1.95520458877275	3.80404495561993	3.27349103675597	2.69117760796151	2.87768037591056	3.22858569957169	3.21345180726487	2.82196592862692	-0.0992959413957748	0.887144637537315	0.998431161219273
Merged-chr5-32125127-2	chr5	32125027	32125227	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11345.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-80043472-1	chr15	80043372	80043572	+	658.666687	f0_balb.idr	Intergenic	Intergenic	-28664.0	NM_011057	18591.0	Mm.144089	NM_011057	ENSMUSG00000000489	Pdgfb	PDGF-B|Sis	platelet derived growth factor, B polypeptide	protein-coding	1.47933090722664	1.33563554773506	1.13515781972047	0.738179706377557	1.05278744333009	0.765888129724808	0.967235844129526	1.90841829524878	0.259874511090387	0.852118326885447	0.998431161219273
Merged-chr2-156111841-4	chr2	156111677	156111877	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029397, intron 1 of 2)	CpG	188.0	NM_170598	75710.0	Mm.27660	NM_029397	ENSMUSG00000089824	Rbm12	5730420G12Rik|9430070C08Rik|AI852903|SWAN|mKIAA0765	RNA binding motif protein 12	protein-coding	3.81641241585599	3.34617113191997	3.13334349695263	3.64863239127885	1.43449741172566	1.649315415153	3.89549995166779	3.54067816113345	-0.688203671338553	0.608536838965221	0.974576632476413
Merged-chr7-101321075-1	chr7	101320975	101321175	+	549.0	f0_balb.idr	promoter-TSS (NM_019990)	promoter-TSS (NM_019990)	-38.0	NM_019990	56018.0	Mm.28896	NM_019990	ENSMUSG00000030688	Stard10	AV048538|CGI-52|NY-C0-28|PC-TP2|PCTP2|Pctpl|Sdccag28|SdccagG28|TISP-81	START domain containing 10	protein-coding	1.17285627052339	0.614797041664794	1.07858410542487	0.916255776563985	1.26936188977889	0.616863716875626	0.607628611228996	1.16110193392032	-0.0264975700246185	0.986649306441258	1
Merged-chr18-60758933-1	chr18	60758833	60759033	+	901.5	f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-10268.0	NM_008306	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-100526340-4	chr5	100526257	100526457	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359204, intron 2 of 10)	intron (NM_001359204, intron 2 of 10)	8048.0	NM_001359204	26891.0	Mm.957	NM_012001	ENSMUSG00000035297	Cops4	AW208976|D5Ertd774e|SGN4	COP9 signalosome subunit 4	protein-coding	2.64186711579552	2.89147107894162	3.1848924191985	1.25686655110404	3.07770641852732	1.34872358261041	2.98782387611059	1.26344661939032	-0.415719363580378	0.817482879095317	0.998431161219273
Merged-chr10-62504068-4	chr10	62503971	62504171	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358965, intron 2 of 3)	intron (NM_001358965, intron 2 of 3)	3686.0	NM_011157	19073.0	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-44184162-2	chr15	44184062	44184262	+	574.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	-11973.0	NM_013696	22045.0	Mm.309350	NM_013696	ENSMUSG00000038760	Trhr	TRH-R1	thyrotropin releasing hormone receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-120508287-1	chr5	120508187	120508387	+	575.0	f1_balb.idr	Intergenic	MT2B2|LTR|ERVL	-2905.0	NM_001177595	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-60517704-1	chr3	60517604	60517804	+	823.0	f1_balb.idr	intron (NM_001253711, intron 1 of 7)	C-rich|Low_complexity|Low_complexity	16525.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32665541-1	chr2	32665441	32665641	+	621.666687	f0_balb.idr	intron (NM_001146348, intron 2 of 14)	intron (NM_001146348, intron 2 of 14)	13212.0	NR_035479	100316776.0		NR_035479	ENSMUSG00000093336	Mir1954	mmu-mir-1954	microRNA 1954	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124087499-1	chr5	124087399	124087599	+	552.0	f1_balb.idr	intron (NM_019875, intron 2 of 11)	ORR1F|LTR|ERVL-MaLR	8299.0	NM_019875	56325.0	Mm.254839	NM_019875	ENSMUSG00000029408	Abcb9	TAPL|mKIAA1520	ATP-binding cassette, sub-family B (MDR/TAP), member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19875643-2	chr7	19875543	19875743	+	694.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_177036)	TTS (NM_177036)	12322.0	NM_177036	319930.0	Mm.215839	NM_177036	ENSMUSG00000049848	Ceacam19	C130022P09Rik|CEAL1	carcinoembryonic antigen-related cell adhesion molecule 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-11726107-2	chr16	11726007	11726207	+	682.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_028964, intron 19 of 20)	intron (NM_028964, intron 19 of 20)	-53595.0	NR_126430	73761.0	Mm.39183	NR_126430		4833415N18Rik	-	RIKEN cDNA 4833415N18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-72803043-1	chr5	72802943	72803143	+	865.75	f0_balb.idr	intron (NM_013689, intron 3 of 17)	intron (NM_013689, intron 3 of 17)	-50266.0	NM_001122754	22165.0	Mm.3264	NM_013698	ENSMUSG00000054892	Txk	A130089B16Rik|Btkl|PTK-RL-18|PTK4|Rlk	TXK tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-39435772-2	chr10	39435672	39435872	+	889.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001122892, intron 2 of 12)	intron (NM_001122892, intron 2 of 12)	65973.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-8368180-4	chr5	8368081	8368281	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001098225)	promoter-TSS (NM_001098225)	-21.0	NM_001310439	11496.0	Mm.275895	NM_001007220	ENSMUSG00000040537	Adam22	2900022I03Rik|AI854032|MDC2	a disintegrin and metallopeptidase domain 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-111489322-3	chr13	111489218	111489418	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028487, intron 1 of 12)	CpG	809.0	NM_028487	73274.0	Mm.57286	NM_028487	ENSMUSG00000032745	Gpbp1	1700034P14Rik|AU019836|D230035M11Rik|Gpbp|mGPBP	GC-rich promoter binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3835642-4	chr4	3835535	3835735	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026147)	promoter-TSS (NM_026147)	20.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	7.15194003199904	7.04735586964331	7.51158190672467	7.11207751190907	7.06282363063711	7.18843764441237	7.52072662881262	7.12871258379022	0.0172730344907005	0.920620337645848	0.998431161219273
Merged-chr5-123675385-4	chr5	123675292	123675492	+	899.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359224, intron 1 of 18)	intron (NM_001359224, intron 1 of 18)	8969.0	NM_019765	56430.0	Mm.241109	NM_019765	ENSMUSG00000049550	Clip1	1110007I12Rik|4631429H07Rik|AV017631|C81039|CLIP-170|CLIP170|CYLN1|Clip50|Rsn|mKIAA4046|restin	CAP-GLY domain containing linker protein 1	protein-coding	4.16104796041457	3.97665144779769	3.70634893806607	3.80973083721146	3.58705327746573	3.15509674452251	4.12265600530834	3.06672498088435	-0.540470720822883	0.29031093125257	0.795360911821054
Merged-chr3-116808242-4	chr3	116808153	116808353	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081326)	promoter-TSS (NM_001081326)	-87.0	NM_001081326	77559.0	Mm.237099	NM_001081326	ENSMUSG00000033400	Agl	1110061O17Rik|9430004C13Rik|9630046L06Rik|AI850929|C77197	amylo-1,6-glucosidase, 4-alpha-glucanotransferase	protein-coding	7.11966735482935	6.78296785461673	6.41765802007158	6.41375407431216	7.07801768982145	6.49139096831532	6.39092006007372	6.39486377165015	-0.0986974844875843	0.668893949915816	0.993418137797039
Merged-chr10-122681302-2	chr10	122681210	122681410	+	891.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110218, intron 1 of 9)	intron (NM_001110218, intron 1 of 9)	1995.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	0.951616231991371	1.1009362942332	0.752247137049716	0.549834597819166	1.2518456968316	0.569796217041013	1.39540340877899	0.55119505528515	0.722432076295443	0.653887960394413	0.987059758436968
Merged-chr6-71494491-2	chr6	71494391	71494591	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001308303, exon 1 of 4)	5' UTR (NM_001308303, exon 1 of 4)	614.0	NM_001308303	22644.0	Mm.422969	NM_009543	ENSMUSG00000052656	Rnf103	AW146237|AW212918|Zfp103|kf-1	ring finger protein 103	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-55495276-4	chr12	55495181	55495381	+	977.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2634.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5852636-2	chr19	5852536	5852736	+	894.375	f1_balb.idr|f1_c57bl6.idr	exon (NM_026169, exon 11 of 11)	exon (NM_026169, exon 11 of 11)	-7156.0	NR_003513	66961.0	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-36485449-5	chr5	36485328	36485528	+	846.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_025725, exon 1 of 1)	exon (NM_025725, exon 1 of 1)	840.0	NM_025725	66717.0	Mm.42368	NM_025725	ENSMUSG00000050677	Ccdc96	4921513E08Rik	coiled-coil domain containing 96	protein-coding	0.828446745661236	1.1945353964107	0.643972128931415	0.625716299140043	0.599633646150118	0.836207564497361	0.468201041275907	0.770567655288707	-0.992198543413725	0.51948019157036	1
Merged-chr6-99094743-3	chr6	99094642	99094842	+	721.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053202, intron 4 of 18)	intron (NM_053202, intron 4 of 18)	-66444.0	NM_001197322	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-149092819-1	chr3	149092719	149092919	+	551.0	f0_balb.idr	Intergenic	Intergenic	-138184.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	-1.50628088747421	-1.47369841887053	-1.48355162630972	-1.49164534427123	-1.50399365842323	-1.31652725226324	-1.32628514067006	-1.33516063717424	2.16298124345	0.491300625002792	1
Merged-chr13-9871103-2	chr13	9871003	9871203	+	696.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-105782.0	NM_144516	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-78497821-4	chr11	78497735	78497935	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172795)	promoter-TSS (NM_172795)	-81.0	NM_172795	237868.0	Mm.210332	NM_172795	ENSMUSG00000050132	Sarm1	A830091I15Rik|C78606|MyD885|Sarm	sterile alpha and HEAT/Armadillo motif containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-135689925-4	chr7	135689847	135690047	+	844.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001081117, exon 14 of 14)	3' UTR (NM_001081117, exon 14 of 14)	26432.0	NM_001081117	17345.0	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-51418406-2	chr3	51418306	51418506	+	731.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_053089, intron 1 of 19)	intron (NM_053089, intron 1 of 19)	2390.0	NM_053089	74838.0	Mm.275281	NM_053089	ENSMUSG00000063273	Naa15	5730450D16Rik|6330400I15|ASTBDN|Narg1|Tbdn-1|mNAT1	N(alpha)-acetyltransferase 15, NatA auxiliary subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-59186524-2	chr6	59186424	59186624	+	677.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22346.0	NM_001081145	68140.0	Mm.25843	NM_001081145	ENSMUSG00000049232	Tigd2	3632410O17Rik	tigger transposable element derived 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-169008878-4	chr2	169008771	169008971	+	849.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30602.0	NR_040326	75508.0	Mm.271256	NR_040326	ENSMUSG00000086348	1700017J07Rik	-	RIKEN cDNA 1700017J07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-105292901-2	chr13	105292801	105293001	+	802.666626	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_027934, exon 1 of 8)	5' UTR (NM_027934, exon 1 of 8)	113.0	NM_027934	71816.0	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-13302953-2	chr18	13302854	13303054	+	778.674988	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	295964.0	NM_153087	225192.0	Mm.207073	NM_153087	ENSMUSG00000037346	Hrh4	AXOR35|BG26|GPCR105|GPRv53|H4|H4R|HH4R	histamine receptor H4	protein-coding	-1.36158454595133	-1.47822759111024	-1.18607247513481	-1.49569248157156	-1.50770913340644	-1.47614970994611	-1.48564551206007	-1.49428262236028	-1.96236487219075	0.570858188942749	1
Merged-chr16-93816590-4	chr16	93816522	93816722	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15499.0	NM_001045529	338467.0	Mm.287329	NM_001045529	ENSMUSG00000039456	Morc3	1110051N18Rik|AI452146|BF318192|D16Jhu32e|NXP2|Zcwcc3	microrchidia 3	protein-coding	7.71244458973294	7.50150480509243	7.74619498111855	7.54140430873428	7.24367775478524	7.64932499500625	8.05197893200059	7.46917818335563	2.0300903210737e-06	0.999990572359138	0.999990572359138
Merged-chr7-30428474-1	chr7	30428374	30428574	+	820.0	f1_c57bl6.idr	3' UTR (NM_001360906, exon 12 of 12)	3' UTR (NM_001360906, exon 12 of 12)	5199.0	NM_172142	243910.0	Mm.386878	NM_172142	ENSMUSG00000036931	Nfkbid	I-kappa-B-delta|IkappaBNS|ikB-delta	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	protein-coding	1.78320797038528	1.8848020368992	2.15910566189421	1.28090285171823	2.30415776704343	2.15181872677239	1.07862538213344	1.05806623895622	-0.0509876239286227	0.965503436381506	0.998431161219273
Merged-chr16-21248928-1	chr16	21248828	21249028	+	585.0	f0_balb.idr	non-coding (NR_046162, exon 5 of 5)	non-coding (NR_046162, exon 5 of 5)	7138.0	NR_106145	102465781.0		NR_106145	ENSMUSG00000098400	Mir7680	Gm27417|mmu-mir-7680	microRNA 7680	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-11375263-4	chr2	11375189	11375389	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040615, intron 1 of 2)	intron (NR_040615, intron 1 of 2)	23211.0	NR_040615	77543.0	Mm.490670	NR_040615	ENSMUSG00000102674	8030442B05Rik	-	RIKEN cDNA 8030442B05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-4239086-4	chr18	4238988	4239188	+	920.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	73256.0	NM_026092	67328.0	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70791612-1	chr14	70791512	70791712	+	617.0	f0_c57.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	17231.0	NM_010071	13449.0	Mm.243323	NM_010071	ENSMUSG00000022102	Dok2	DokR|Frip|dok-R	docking protein 2	protein-coding	1.55513475626505	3.73671176499618	2.97498366294118	2.17368026917878	1.07683520791355	2.19765801749628	1.18032157257388	2.43892508003929	-1.99888502955552	0.0480496004761237	0.318210144390381
Merged-chr4-95307302-4	chr4	95307200	95307400	+	983.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-250207.0	NM_001113412	75578.0	Mm.276098	NM_029347	ENSMUSG00000028573	Fggy	2310009E04Rik	FGGY carbohydrate kinase domain containing	protein-coding	1.29926684676268	1.50028571308769	0.675982400890951	0.666383763679377	1.31254173961077	1.51431702021962	0.678704510172102	0.862865578144655	0.173553780290162	0.909453592908429	0.998431161219273
Merged-chr16-92382595-2	chr16	92382495	92382695	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_105054)	promoter-TSS (NR_105054)	88.0	NR_105054	101056236.0	Mm.149108	NR_105054		Gm29805	-	predicted gene, 29805	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-31119549-4	chr17	31119421	31119621	+	849.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10090.0	NM_011575	21786.0	Mm.4641	NM_011575	ENSMUSG00000024029	Tff3	ITF|mITF	trefoil factor 3, intestinal	protein-coding	3.04353730804206	2.3270429174603	2.40806477131415	2.59597388923253	3.00095602467902	3.00186557142822	2.42650171623133	3.14604710463072	0.556789149788618	0.431405393626117	0.904679012727573
Merged-chr7-35140054-4	chr7	35139951	35140151	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20758.0	NM_007678	12606.0	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-136137262-4	chr1	136137200	136137400	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039472, intron 1 of 34)	intron (NM_001039472, intron 1 of 34)	5910.0	NR_153829	16565.0	Mm.276135	NM_019962	ENSMUSG00000041642	Kif21b	2610511N21Rik|mKIAA0449	kinesin family member 21B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-78466968-2	chr10	78466868	78467068	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2020.0	NM_172134	216134.0	Mm.206159	NM_172134	ENSMUSG00000032788	Pdxk	2310036D04Rik|AA119688|C77999	pyridoxal (pyridoxine, vitamin B6) kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-80026841-1	chr15	80026741	80026941	+	541.0	f1_balb.idr	Intergenic	Intergenic	-12033.0	NM_011057	18591.0	Mm.144089	NM_011057	ENSMUSG00000000489	Pdgfb	PDGF-B|Sis	platelet derived growth factor, B polypeptide	protein-coding	-0.17040282759059	-0.156648709543202	0.154654140542717	-0.164643745596637	-0.0283463034505389	0.449437293929412	0.161809129893203	-0.164036664248362	1.88774765121542	0.403013301482822	1
Merged-chr7-16875130-4	chr7	16875030	16875230	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081655)	promoter-TSS (NM_001081655)	-187.0	NM_001081655	629378.0	Mm.491123	NM_001081655	ENSMUSG00000078794	Dact3	EG666671|naa-3	dishevelled-binding antagonist of beta-catenin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-92217414-4	chr1	92217310	92217510	+	984.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-37069.0	NM_207225	208727.0	Mm.318567	NM_207225	ENSMUSG00000026313	Hdac4	4932408F19Rik|HD4	histone deacetylase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-23573590-4	chr13	23573493	23573693	+	918.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178188)	promoter-TSS (NM_178188)	597.0	NM_178195	319180.0		NM_178195	ENSMUSG00000069268	Hist1h2bf	-	histone cluster 1, H2bf	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-38392330-3	chr16	38392223	38392423	+	848.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30133.0	NM_022318	64082.0	Mm.390856	NM_022318	ENSMUSG00000022803	Popdc2	AV006127|Pop2	popeye domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-110617938-2	chr8	110617838	110618038	+	954.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146216)	promoter-TSS (NM_146216)	-629.0	NR_151674	234729.0	Mm.274894	NM_146216	ENSMUSG00000010936	Vac14	AA959718|BC032215|D8Wsu151e|Tax1bp2|Trx|ingls	Vac14 homolog (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-134621936-2	chr4	134621836	134622036	+	826.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_207237, intron 2 of 11)	B4|SINE|B4	-54085.0	NR_105829	102465216.0		NR_105829	ENSMUSG00000099289	Mir6403	Gm27992|mmu-mir-6403	microRNA 6403	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-53786453-3	chr11	53786313	53786513	+	850.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033332, intron 3 of 3)	MTD|LTR|ERVL-MaLR	15940.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-77289414-2	chr10	77289314	77289514	+	663.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID|SINE|ID	30114.0	NM_030262	80294.0	Mm.203556	NM_030262	ENSMUSG00000020260	Pofut2	2310011G23Rik|AI256847|BC003494|C21orf80|FUT13	protein O-fucosyltransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97999385-4	chr11	97999260	97999460	+	976.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3187.0	NR_152188	217151.0	Mm.277896	NM_207231	ENSMUSG00000038352	Arl5c	Arl12|BC065791	ADP-ribosylation factor-like 5C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-35152711-4	chr15	35152613	35152813	+	992.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357821, intron 1 of 11)	intron (NM_001357821, intron 1 of 11)	3093.0	NM_001357821	56274.0	Mm.262330	NM_019635	ENSMUSG00000022329	Stk3	0610042I06Rik|MST|Mst2|Mst3|Ste20|mess1	serine/threonine kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127575332-2	chr10	127575203	127575403	+	885.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008512, exon 25 of 89)	exon (NM_008512, exon 25 of 89)	-40744.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-52049146-2	chr12	52049046	52049246	+	600.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21083.0	NM_008159	14762.0	Mm.12890	NM_008159	ENSMUSG00000035148	Gpr33	-	G protein-coupled receptor 33	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-73604282-2	chr7	73604182	73604382	+	553.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER20B|LTR|ERVK	-45887.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-132509438-1	chr2	132509338	132509538	+	720.0	f0_balb.idr	intron (NR_028286, intron 1 of 3)	intron (NR_028286, intron 1 of 3)	18710.0	NR_028286	70371.0	Mm.394667	NR_028286	ENSMUSG00000086379	1700026D11Rik	-	RIKEN cDNA 1700026D11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-107856235-4	chr13	107856145	107856345	+	884.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 2 of 14)	intron (NM_145456, intron 2 of 14)	33819.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	-1.84362945061595	-1.81329140012928	-1.67810947190254	-1.83000206547234	-1.84149977556685	-1.81130325271815	-1.67603257143677	-1.82865309133977	0.037684011990387	0.991491645451152	1
Merged-chr7-126504674-2	chr7	126504574	126504774	+	935.400024	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1237.0	NM_183020	233871.0	Mm.231450	NM_183020	ENSMUSG00000032637	Atxn2l	A2D|A2LG|A2RP|A2lp|Atxnl2	ataxin 2-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-43478655-5	chr10	43478534	43478734	+	911.7999880000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199028)	promoter-TSS (NM_199028)	-506.0	NM_199028	331623.0	Mm.490388	NM_199028	ENSMUSG00000038214	Bend3	mKIAA1553	BEN domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-35131955-2	chr5	35131855	35132055	+	812.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26258.0	NM_013587	16976.0	Mm.277661	NM_013587	ENSMUSG00000029103	Lrpap1	AA617339|AI790446|AU042172|C77774|HBP44|RAP	low density lipoprotein receptor-related protein associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-10541412-2	chr11	10541312	10541512	+	590.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2B2|LINE|L1	-572604.0	NM_177033	319922.0	Mm.337851	NM_177033	ENSMUSG00000050830	Vwc2	A930041G11Rik|G11|PSST739|UNQ739|cradin	von Willebrand factor C domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-97081015-2	chr7	97080920	97081120	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010248)	promoter-TSS (NM_010248)	-731.0	NM_001162477	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	2.12588963793762	2.84895771530662	1.54160185675841	2.00355661527482	2.03694515992982	2.28510256628771	1.55171498723341	2.35531967344234	-0.313765487443039	0.738096663904713	0.998431161219273
Merged-chr12-99550876-2	chr12	99550776	99550976	+	817.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12965.0	NR_136760	102639404.0	Mm.396324	NR_136760	ENSMUSG00000097917	Gm26839	-	predicted gene, 26839	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-6741384-2	chr17	6741284	6741484	+	739.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009510, intron 10 of 12)	intron (NM_009510, intron 10 of 12)	35554.0	NM_183368	83672.0	Mm.442201	NM_031395	ENSMUSG00000041831	Sytl3	A430092N21|Slp3|Slp3-a|Slp3-b|mFLJ00307	synaptotagmin-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-145156181-3	chr4	145156084	145156284	+	682.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001276502, exon 18 of 69)	exon (NM_001276502, exon 18 of 69)	34482.0	NM_001276502	230895.0	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135325930-2	chr4	135325830	135326030	+	663.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016799, intron 14 of 17)	B2_Mm2|SINE|B2	27284.0	NM_016799	51796.0	Mm.1963	NM_016799	ENSMUSG00000028809	Srrm1	AA407769|POP101|Srm160	serine/arginine repetitive matrix 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-35598608-4	chr18	35598491	35598691	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357472)	promoter-TSS (NM_001357472)	-26.0	NM_001357470	67869.0	Mm.126534	NM_026420	ENSMUSG00000037058	Paip2	2310050K10Rik|AU045972	polyadenylate-binding protein-interacting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122390891-2	chr5	122390791	122390991	+	613.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019824)	promoter-TSS (NM_019824)	-987.0	NM_019824	56378.0	Mm.275942	NM_019824	ENSMUSG00000029465	Arpc3	1110006A04Rik|p21-ARC|p21-Ar|p21Arc	actin related protein 2/3 complex, subunit 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-54377327-4	chr14	54377208	54377408	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011405, intron 6 of 11)	intron (NM_011405, intron 6 of 11)	16467.0	NM_026936	69089.0	Mm.182340	NM_026936	ENSMUSG00000000959	Oxa1l	1810020M02Rik|AI894287	oxidase assembly 1-like	protein-coding	2.01780430408606	2.2748664058614	1.2615630839244	1.85268632664441	2.50155703733457	2.29236678260476	1.52960505451836	3.0254462350506	1.28766552608048	0.183405834548672	0.658116185534174
Merged-chr8-117307699-2	chr8	117307599	117307799	+	666.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	-41471.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-19026822-3	chr11	19026709	19026909	+	626.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7840.0	NM_010789	17268.0	Mm.356578	NM_010789	ENSMUSG00000020160	Meis1	C530044H18Rik|Evi8	Meis homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-45865543-4	chr1	45865427	45865627	+	977.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60067.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27570724-2	chr17	27570624	27570824	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur2|SINE|Alu	-4997.0	NM_001002895	106672.0	Mm.61488	NM_001002895	ENSMUSG00000062753	AI413582	AI854251|Smim29	expressed sequence AI413582	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-87810934-4	chr6	87810828	87811028	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104478, intron 1 of 2)	intron (NR_104478, intron 1 of 2)	851.0	NM_001039394	69834.0	Mm.37380	NM_133717	ENSMUSG00000030055	Rab43	1810048P08Rik|2500004H21Rik|AW490415	RAB43, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-65113973-5	chr14	65113804	65114004	+	814.213318	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4|SINE|ID	-15798.0	NM_001360385	54616.0	Mm.103748	NM_018788	ENSMUSG00000021978	Extl3	2900009G18Rik|AU040105|Ext1l|mKIAA0519	exostoses (multiple)-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-13370900-1	chr15	13370800	13371000	+	823.0	f0_balb.idr	Intergenic	Intergenic	-197225.0	NM_007666	12563.0	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-73058819-2	chr15	73058719	73058919	+	544.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164641, intron 1 of 17)	intron (NM_001164641, intron 1 of 17)	2385.0	NM_001164641	76510.0	Mm.158902	NM_029640	ENSMUSG00000047921	Trappc9	1810044A24Rik|2900005P22Rik|4632408O18Rik|Ibp|Nibp|TRS130|mKIAA1882	trafficking protein particle complex 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-19002359-3	chr10	19002226	19002426	+	998.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009397, exon 9 of 9)	3' UTR (NM_009397, exon 9 of 9)	9637.0	NM_001166402	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81178857-1	chr15	81178757	81178957	+	733.0	f1_c57bl6.idr	intron (NM_001082536, intron 1 of 13)	L2|LINE|L2	11900.0	NM_001082536	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	1.47080173472626	1.64197968821318	1.58788459908457	2.13307803174449	1.19727358725101	1.79331630786261	1.4480155225807	1.40849755004109	-0.886557402055248	0.419042245864245	0.898921771534229
Merged-chr5-135458029-2	chr5	135457929	135458129	+	576.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146001, intron 3 of 30)	intron (NM_146001, intron 3 of 30)	-63483.0	NM_148932	107939.0	Mm.28399	NM_148932	ENSMUSG00000053293	Pom121	2610027A18Rik|C80273|mKIAA0618	nuclear pore membrane protein 121	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80398148-3	chr10	80397954	80398154	+	724.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001306143, intron 1 of 6)	intron (NM_001306143, intron 1 of 6)	1477.0	NM_013595	17192.0	Mm.7142	NM_013595	ENSMUSG00000035478	Mbd3	AI181826|AU019209	methyl-CpG binding domain protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120697805-4	chr8	120697716	120697916	+	991.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29496.0	NM_001293559	12857.0	Mm.386758	NM_009941	ENSMUSG00000031818	Cox4i1	AL024441|COX|COX IV-1|COXIV|Cox4|Cox4a|IV-1	cytochrome c oxidase subunit 4I1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-13272548-3	chr2	13272427	13272627	+	905.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-1112.0	NM_009105	20163.0	Mm.905	NM_009105	ENSMUSG00000026727	Rsu1	RsuI|rsp-1	Ras suppressor protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24472608-2	chr17	24472508	24472708	+	806.599976	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001252463)	TTS (NM_001252463)	-1276.0	NM_175682	319259.0	Mm.258355	NM_175682	ENSMUSG00000045744	Bricd5	9930021D14Rik	BRICHOS domain containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-138321667-2	chr1	138321567	138321767	+	593.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	47929.0	NM_177397	338375.0	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-65205060-1	chr16	65204960	65205160	+	597.0	f0_balb.idr	Intergenic	Intergenic	-99276.0	NM_008310	15557.0	Mm.5040	NM_008310	ENSMUSG00000050783	Htr1f	Htr1eb	5-hydroxytryptamine (serotonin) receptor 1F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-78159859-2	chr11	78159759	78159959	+	577.25	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009423, exon 7 of 7)	3' UTR (NM_009423, exon 7 of 7)	5691.0	NM_009423	22032.0	Mm.390418	NM_009423	ENSMUSG00000017386	Traf4	A530032M13Rik|CART1|msp2	TNF receptor associated factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-17927652-2	chr14	17927552	17927752	+	713.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113417, intron 3 of 9)	intron (NM_001113417, intron 3 of 9)	-53992.0	NM_009380	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-82764984-3	chr11	82764882	82765082	+	884.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291242)	promoter-TSS (NM_001291242)	637.0	NM_025884	66983.0	Mm.29622	NM_025884	ENSMUSG00000046010	Zfp830	2410003C20Rik|AV301118|AW048207|Ccdc16|Omcg1|Znf830	zinc finger protein 830	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83020938-1	chr6	83020838	83021038	+	598.0	f1_balb.idr	intron (NM_033079, intron 7 of 9)	ORR1F|LTR|ERVL-MaLR	12533.0	NM_010070	13448.0	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	-0.667543147450544	-0.65831952661807	-0.66135736860609	-0.260289805444673	-0.529204966490427	-0.657632628119559	-0.66068867894781	-0.254793673190986	0.389194164369103	0.887428419764641	1
Merged-chr8-35597256-4	chr8	35597184	35597384	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081279, intron 1 of 2)	intron (NM_001081279, intron 1 of 2)	-8264.0	NR_040376	100504714.0	Mm.381744	NR_040376	ENSMUSG00000097357	Gm16793	-	predicted gene, 16793	ncRNA	5.5763052577468	5.51261349572261	5.18568573722616	5.18926403064181	5.37368062834751	5.99985698410877	5.88342728382027	5.24439674465481	0.31261310888512	0.277545423181593	0.781378569827891
Merged-chr2-136916358-3	chr2	136916264	136916464	+	870.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355671, intron 2 of 6)	intron (NM_001355671, intron 2 of 6)	17013.0	NM_001038641	74243.0	Mm.330612	NM_028201	ENSMUSG00000027281	Slx4ip	2210009G21Rik|2410004I22Rik|C85661|Slxip	SLX4 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-15541420-2	chr9	15541320	15541520	+	643.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359604, intron 2 of 2)	intron (NM_001359604, intron 2 of 2)	35925.0	NM_133214	170748.0	Mm.86572	NM_133214	ENSMUSG00000058173	Smco4	Fn5	single-pass membrane protein with coiled-coil domains 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-57582577-4	chr6	57582473	57582673	+	887.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025992, intron 1 of 22)	MER57E1|LTR|ERV1	1581.0	NM_025992	67138.0	Mm.297393	NM_025992	ENSMUSG00000029798	Herc6	1700121D12Rik|2510038N07Rik|4930427L17Rik|AI451296|CEB1|Herc5	hect domain and RLD 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69045618-4	chr11	69045515	69045715	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011496)	promoter-TSS (NM_011496)	-22.0	NM_011496	20877.0	Mm.3488	NM_011496	ENSMUSG00000020897	Aurkb	AIM-1|AIRK2|AL022959|Aik2|Aim1|Ark2|AurB|IPL1|STK-1|Stk12|Stk5	aurora kinase B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-44662156-3	chr18	44662031	44662231	+	902.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_026853, exon 1 of 5)	non-coding (NR_026853, exon 1 of 5)	135.0	NM_001085374	328949.0	Mm.312511	NM_001033406	ENSMUSG00000071856	Mcc	D18Ertd451e|E330037C19	mutated in colorectal cancers	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-80168305-4	chr2	80168204	80168404	+	971.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38646.0	NM_001355140	18573.0	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-52376688-3	chr10	52376585	52376785	+	857.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053187, intron 1 of 7)	intron (NM_053187, intron 1 of 7)	5439.0	NM_053187	94221.0	Mm.390258	NM_053187	ENSMUSG00000019861	Gopc	2210402P09Rik|AI844555|CAL|FIG|GOPC1|PIST	golgi associated PDZ and coiled-coil motif containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131058012-2	chr1	131057912	131058112	+	590.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008551, exon 4 of 10)	exon (NM_008551, exon 4 of 10)	38167.0	NM_010548	16153.0	Mm.874	NM_010548	ENSMUSG00000016529	Il10	CSIF|Il-10	interleukin 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-74961333-4	chr18	74961238	74961438	+	923.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010720)	promoter-TSS (NM_010720)	-75.0	NM_010720	16891.0	Mm.299647	NM_010720	ENSMUSG00000053846	Lipg	3110013K01Rik|EL|lipase|mEDL	lipase, endothelial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-34674407-4	chr12	34674309	34674509	+	812.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271386, intron 3 of 27)	B4|SINE|B4	-145520.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	1.78064111395311	3.14762617417134	2.4710837782992	2.39767018912477	2.28792364835417	1.31245199991268	1.2765172075765	2.60127411544537	-1.14333694994316	0.250401221182635	0.748509191602971
Merged-chr11-88181472-2	chr11	88181372	88181572	+	600.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001172099, intron 2 of 9)	intron (NM_001172099, intron 2 of 9)	11907.0	NM_001172099	103841.0	Mm.374846	NM_198013	ENSMUSG00000018378	Cuedc1	AI841487|C330016O16Rik	CUE domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-49834155-4	chr18	49834055	49834255	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081371, intron 1 of 42)	intron (NM_001081371, intron 1 of 42)	1158.0	NM_001081371	240283.0	Mm.257790	NM_001081371	ENSMUSG00000037416	Dmxl1	C630007L23Rik|D030030C22	Dmx-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-63875650-3	chr17	63875557	63875757	+	695.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037997, intron 1 of 18)	MLTR31FA_MM|LTR|ERVK	-2409.0	NM_001286415	14158.0	Mm.23039	NM_008000	ENSMUSG00000000127	Fer	AV082135|C330004K01Rik|Fert|Fert2	fer (fms/fps related) protein kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-110826050-4	chr9	110825949	110826149	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199471)	promoter-TSS (NM_199471)	-641.0	NM_199471	272643.0	Mm.458525	NM_199471	ENSMUSG00000058398	Prss43	Gm661|Tessp3	protease, serine 43	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-94761061-4	chr11	94760952	94761152	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001105561, exon 1 of 5)	5' UTR (NM_001105561, exon 1 of 5)	130.0	NM_001105561	217122.0	Mm.24063	NM_183153		Gm11545	A430060F13Rik|C86086	predicted gene 11545	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-65189474-2	chr12	65189368	65189568	+	661.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-16888.0	NM_172578	217653.0	Mm.21144	NM_172578	ENSMUSG00000047534	Mis18bp1	6720403H11|C79407|Knl2|mKIAA1903	MIS18 binding protein 1	protein-coding	-1.3681463318974	-1.33624156493372	-1.34650167276047	-0.80669348975676	-1.36769697821496	-1.33401815676661	-1.34417900924365	-1.3534210303531	-2.3580830592467	0.49586638340111	1
Merged-chr15-101238757-2	chr15	101238657	101238857	+	582.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13571.0	NR_045328	380977.0	Mm.399924	NR_045326	ENSMUSG00000097915	A330009N23Rik	-	RIKEN cDNA A330009N23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-78206283-5	chr12	78206139	78206339	+	930.542847	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20416.0	NM_172952	268566.0	Mm.341742	NM_145965	ENSMUSG00000047454	Gphn	5730552E08Rik|AI662856|BC027112|C230040D23|GPH|GPHRYN|geph	gephyrin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-103856097-2	chr3	103855987	103856187	+	870.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-3708.0	NR_104070	19260.0	Mm.395	NM_008979	ENSMUSG00000027843	Ptpn22	70zpep|PEP|Ptpn8	protein tyrosine phosphatase, non-receptor type 22 (lymphoid)	protein-coding	1.0119491002369	2.85994211817845	1.58772891274614	2.13467835250743	2.89833575534859	2.17851821743993	1.09493458599815	1.33076689651423	0.0129408391444537	0.991028841576726	0.998431161219273
Merged-chr12-110846126-2	chr12	110846026	110846226	+	817.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4153.0	NM_001199785	72805.0	Mm.443524	NM_028365	ENSMUSG00000021271	Zfp839	2810455K09Rik	zinc finger protein 839	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-30944290-4	chr16	30944192	30944392	+	865.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	137140.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-32815006-1	chr16	32814906	32815106	+	583.0	f1_balb.idr	Intergenic	Intergenic	-4560.0	NM_001256309	381043.0	Mm.303864	NM_001256309	ENSMUSG00000094430	Smbd1	Gm1743|Gm933	somatomedin B domain containing 1	protein-coding	-0.280579311969751	-0.266315728614722	0.305252830116872	-0.274590340611421	-0.130598679017574	0.366417884922196	-0.269955227847284	-0.273960429277696	0.430315906770675	0.85938176486997	1
Merged-chr9-83574872-2	chr9	83574777	83574977	+	662.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_172507, intron 1 of 3)	MTC|LTR|ERVL-MaLR	26539.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	2.01885592663176	2.97180563286796	2.46879926459317	1.31899264933748	2.39287818147716	3.15661369326586	2.89258313564612	1.5887406295223	0.602979776205004	0.514246207762704	0.946798391882055
Merged-chr14-18242508-2	chr14	18242408	18242608	+	555.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3402.0	NM_011584	353187.0	Mm.26587	NM_011584	ENSMUSG00000021775	Nr1d2	RVR|Rev-erb	nuclear receptor subfamily 1, group D, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-118041256-1	chr10	118041156	118041356	+	792.5	f0_balb.idr	Intergenic	RMER15-int|LTR|ERVL	-100531.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	1.99344837548968	0.972872245227359	1.18484345786626	1.49022192008363	2.38410323594536	1.22914037501495	1.19294207104112	1.63305043778634	0.721961344107149	0.551325239413563	0.959195395405638
Merged-chr10-21670391-4	chr10	21670291	21670491	+	890.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20454.0	NR_045843	432436.0	Mm.244553	NM_001004162	ENSMUSG00000056716	Gm5420	EG432436	predicted gene 5420	ncRNA	2.17069150638414	2.31506210760593	2.64316279948562	1.54864972678259	2.67177130231743	2.3321717401796	2.12301610872485	1.55521443387619	0.0237525720438933	0.979421012794121	0.998431161219273
Merged-chr12-8659918-4	chr12	8659820	8660020	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-14214.0	NM_001160221	80913.0	Mm.341243	NM_030723	ENSMUSG00000020594	Pum2	5730503J23Rik|Pumm2	pumilio RNA-binding family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-109039192-4	chr9	109039085	109039285	+	878.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025858, intron 1 of 5)	intron (NM_025858, intron 1 of 5)	618.0	NM_025858	66940.0	Mm.196533	NM_025858	ENSMUSG00000025647	Shisa5	2310008D10Rik|6430628I05Rik|Scotin|mShisa5	shisa family member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-112680940-2	chr4	112680825	112681025	+	585.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13B|LTR|ERVK	67185.0	NM_001285963	329919.0	Mm.259806	NM_177865	ENSMUSG00000034359	Skint2	A430070M19|B7S3|Skint-2	selection and upkeep of intraepithelial T cells 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-61914558-4	chr9	61914458	61914658	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018853)	promoter-TSS (NM_018853)	-48.0	NM_018853	56040.0	Mm.3158	NM_018853	ENSMUSG00000007892	Rplp1	2410042H16Rik|Arpp1|C430017H15Rik	ribosomal protein, large, P1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-101264434-2	chr4	101264334	101264534	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146145, intron 1 of 24)	intron (NM_146145, intron 1 of 24)	848.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-9765105-3	chr17	9765021	9765221	+	764.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045433, intron 3 of 3)	L1MC5a|LINE|L1	10745.0	NR_045433	71092.0	Mm.243827	NR_045433		4930452A19Rik	4933424P20Rik	RIKEN cDNA 4930452A19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-104403778-3	chr8	104403677	104403877	+	700.638916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-7970.0	NM_153582	97487.0	Mm.29658	NM_153582	ENSMUSG00000096188	Cmtm4	Cklfsf4|D19397|Gm9853	CKLF-like MARVEL transmembrane domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3325526-4	chr19	3325424	3325624	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013495, intron 1 of 18)	CpG	2223.0	NM_013495	12894.0	Mm.18522	NM_013495	ENSMUSG00000024900	Cpt1a	C730027G07|CPTI|Cpt1	carnitine palmitoyltransferase 1a, liver	protein-coding	1.91781355828159	1.4581255545788	2.079852112836	2.7253795241224	2.60642002688286	2.82814024165461	3.13876795155981	2.54918543548777	1.40277987122873	0.0936960741547991	0.474331433632607
Merged-chr13-51395916-4	chr13	51395833	51396033	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12685.0	NM_010101	13610.0	Mm.136736	NM_010101	ENSMUSG00000067586	S1pr3	AI132464|Edg3|Lpb3|S1p3	sphingosine-1-phosphate receptor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-6476986-10	chr17	6476880	6477080	+	957.01001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-25986.0	NR_033520	547127.0	Mm.297552	NM_001045538		Tmem181b-ps	Tmem181b	transmembrane protein 181B, pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-66310135-4	chr7	66310037	66310237	+	818.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146191, intron 6 of 33)	intron (NM_146191, intron 6 of 33)	71587.0	NR_106024	102465640.0		NR_106024	ENSMUSG00000098353	Mir7057	Gm27550|mmu-mir-7057	microRNA 7057	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-110886003-4	chr12	110885954	110886154	+	921.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026048, intron 1 of 4)	intron (NM_026048, intron 1 of 4)	3091.0	NM_027223	67236.0	Mm.287157	NM_026048	ENSMUSG00000021276	Cinp	1810047K05Rik|2810452K22Rik	cyclin-dependent kinase 2 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-79533472-4	chr14	79533366	79533566	+	946.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286411, intron 1 of 8)	intron (NM_001286411, intron 1 of 8)	17792.0	NM_001286411	13709.0	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120629069-2	chr11	120628969	120629169	+	843.25	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010756, exon 3 of 3)	3' UTR (NM_010756, exon 3 of 3)	-4067.0	NM_153056	209011.0	Mm.292957	NM_153056	ENSMUSG00000025138	Sirt7	-	sirtuin 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180776657-2	chr1	180776557	180776757	+	742.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36948.0	NM_008210	15078.0	Mm.138832	NM_008210	ENSMUSG00000060743	H3f3a	EyeLinc14|H3.3A	H3 histone, family 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-93483542-1	chr10	93483442	93483642	+	544.0	f1_c57bl6.idr	intron (NM_008517, intron 18 of 18)	intron (NM_008517, intron 18 of 18)	-5226.0	NM_010401	15109.0	Mm.13000	NM_010401	ENSMUSG00000020017	Hal	Hsd|his|histidase	histidine ammonia lyase	protein-coding	-0.0226456001751389	-0.0042775842992249	0.686539976434319	-0.0149114547547034	0.264545964396381	-0.00292945805321101	0.699400653003722	-0.0140998719779184	0.432257463219047	0.846219334086884	1
Merged-chr8-80314988-4	chr8	80314893	80315093	+	990.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-179052.0	NM_010369	14934.0	Mm.13123	NM_010369	ENSMUSG00000051839	Gypa	AI853584|CD235a|GPA	glycophorin A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-88750055-4	chr15	88749746	88749946	+	753.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1865.0	NM_181412	223773.0	Mm.396622	NM_181412	ENSMUSG00000034333	Zbed4	1700009F06Rik	zinc finger, BED type containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-44736228-3	chr17	44736143	44736343	+	960.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271630)	promoter-TSS (NM_001271630)	-67.0	NM_001271631	12393.0	Mm.391013	NM_009820	ENSMUSG00000039153	Runx2	AML3|Cbf|Cbfa-1|Cbfa1|LS3|Osf2|PEBP2aA|Pebp2a1|Pebpa2a	runt related transcription factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-59248291-3	chr11	59248187	59248387	+	682.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009522, exon 4 of 4)	3' UTR (NM_009522, exon 4 of 4)	-20020.0	NM_007476	11840.0	Mm.371546	NM_007476	ENSMUSG00000048076	Arf1	-	ADP-ribosylation factor 1	protein-coding	2.42474783686934	1.61704262026379	2.54248346725733	2.37680482028888	2.17576925903444	1.36180806723129	1.95980256065679	2.7240945794819	-0.304486300904965	0.749222755875675	0.998431161219273
Merged-chr7-99043540-4	chr7	99043442	99043642	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 6 of 14)	intron (NM_178635, intron 6 of 14)	97602.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123077237-2	chr5	123077137	123077337	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039723, intron 1 of 11)	intron (NM_001039723, intron 1 of 11)	962.0	NM_001039723	330189.0	Mm.391872	NM_001039723	ENSMUSG00000054434	Tmem120b	-	transmembrane protein 120B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-115838491-4	chr6	115838390	115838590	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001110506)	promoter-TSS (NM_001110506)	-78.0	NM_001110506	212516.0	Mm.333333	NM_198603	ENSMUSG00000030321	Efcab12	BB124106	EF-hand calcium binding domain 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-110260961-2	chr7	110260872	110261072	+	669.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009302, intron 3 of 11)	L1_Mus4|LINE|L1	39269.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-55356373-2	chr3	55356273	55356473	+	566.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357475, intron 3 of 16)	intron (NM_001357475, intron 3 of 16)	-105355.0	NM_001195539	13175.0	Mm.393242	NM_019978	ENSMUSG00000027797	Dclk1	1700113D08Rik|2810480F11Rik|AI836758|Click-I|Cpg16|Dcamkl1|Dcl|Dclk|mKIAA0369	doublecortin-like kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-127142664-4	chr6	127142590	127142790	+	766.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009829, intron 3 of 4)	intron (NM_009829, intron 3 of 4)	-6699.0	NR_040274	77558.0	Mm.358918	NR_040273	ENSMUSG00000097166	9330179D12Rik	-	RIKEN cDNA 9330179D12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-54439541-3	chr11	54439492	54439692	+	889.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173753, intron 1 of 17)	intron (NM_173753, intron 1 of 17)	1413.0	NM_173753	216742.0	Mm.34087	NM_173753	ENSMUSG00000035992	Fnip1	A730024A03Rik|AI838773|AW557298	folliculin interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127645380-1	chr10	127645280	127645480	+	811.0	f1_balb.idr	intron (NM_009284, intron 1 of 21)	RLTR21|LTR|ERVK	2394.0	NM_009284	20852.0	Mm.121721	NM_009284	ENSMUSG00000002147	Stat6	-	signal transducer and activator of transcription 6	protein-coding	1.227897864742	0.93107569385151	0.912231820536124	1.80146419993716	2.03545833563756	1.83655530070532	0.916433742893663	1.90833896412404	1.50632056257212	0.25400411880065	0.751984228665126
Merged-chr11-5056160-2	chr11	5056060	5056260	+	751.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001190406, exon 5 of 5)	3' UTR (NM_001190406, exon 5 of 5)	-1968.0	NM_145216	75668.0	Mm.374836	NM_145216	ENSMUSG00000034209	Rasl10a	2210403B10Rik|AI852688	RAS-like, family 10, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-88667531-1	chr8	88667431	88667631	+	634.333313	f1_balb.idr	intron (NM_145857, intron 4 of 12)	intron (NM_145857, intron 4 of 12)	20184.0	NM_145857	257632.0	Mm.222633	NM_145857	ENSMUSG00000055994	Nod2	ACUG|BLAU|CD|Card15|F830032C23Rik|IBD1|Nlrc2	nucleotide-binding oligomerization domain containing 2	protein-coding	0.808851106837653	0.861273458684963	1.76902681125052	1.49301375215981	1.29992416545551	1.95966764067422	0.848275260963597	1.61738372317821	0.64339280958799	0.641887985754731	0.982599433509505
Merged-chr11-77490064-2	chr11	77489929	77490129	+	745.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172945)	promoter-TSS (NM_172945)	-351.0	NM_172945	268445.0	Mm.39296	NM_172945	ENSMUSG00000037907	Ankrd13b	AW124583|B930093C12Rik	ankyrin repeat domain 13b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45830860-4	chr7	45830763	45830963	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153419)	promoter-TSS (NM_153419)	-74.0	NM_153419	101612.0	Mm.274847	NM_153419	ENSMUSG00000053801	Grwd1	A301|AI504353|Grwd|Wdr28	glutamate-rich WD repeat containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-152406169-4	chr3	152406070	152406270	+	934.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001287139, intron 1 of 13)	intron (NM_001287139, intron 1 of 13)	9486.0	NM_001287139	108946.0	Mm.379292	NM_198416	ENSMUSG00000039068	Zzz3	3110065C23Rik|6430567E01Rik|AA408566|AI481057|AW556059|R75514	zinc finger, ZZ domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115158350-4	chr5	115158290	115158490	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175403)	promoter-TSS (NM_175403)	-214.0	NM_175403	109154.0	Mm.153963	NM_175403	ENSMUSG00000048578	Mlec	2410014A08Rik|AI850530|ESTM19|X83352|mKIAA0152	malectin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-29521204-4	chr19	29521097	29521297	+	997.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015567, intron 1 of 3)	intron (NR_015567, intron 1 of 3)	790.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-182375351-3	chr1	182375259	182375459	+	853.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33753.0	NM_175127	67948.0	Mm.30737	NM_175127	ENSMUSG00000047539	Fbxo28	4833428J17Rik|5730505P19Rik|D1Ertd578e|Fbx28|mKIAA0483	F-box protein 28	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141724867-4	chr4	141724758	141724958	+	889.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1439.0	NM_001017966	68817.0	Mm.393721	NM_001017966	ENSMUSG00000078515	Ddi2	1110056G13Rik|1700027M01Rik|9130022E05Rik|AI604911|AU040698	DNA-damage inducible protein 2	protein-coding	1.67524507794952	2.4950827738038	1.44342104498932	1.17566019934791	1.94019710979578	2.30563779368348	2.51518348720325	1.91565011794246	0.985031558399771	0.336051369740752	0.836517671559698
Merged-chr9-116166422-4	chr9	116166308	116166508	+	967.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009371, intron 1 of 7)	intron (NM_009371, intron 1 of 7)	8955.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-33997288-3	chr5	33997188	33997388	+	658.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001985, intron 1 of 2)	CpG	1304.0	NM_001001985	269642.0	Mm.274610	NM_001001985	ENSMUSG00000048142	Nat8l	1110038O08Rik|Shati	N-acetyltransferase 8-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-101651443-2	chr4	101651254	101651454	+	729.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_175036, intron 1 of 3)	intron (NM_175036, intron 1 of 3)	3571.0	NM_175036	230514.0	Mm.4756	NM_175036	ENSMUSG00000035212	Leprot	LEPR|OB-RGRP|Obrgrp|VPS55	leptin receptor overlapping transcript	protein-coding	0.508196727680896	0.385639778081162	0.556480026516061	1.00563927521225	0.364977011433942	0.584815168000646	0.713885873330825	1.01360350861337	0.303200837488863	0.856660246274514	1
Merged-chr7-100425924-2	chr7	100425824	100426024	+	707.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001017985, intron 18 of 32)	intron (NM_001017985, intron 18 of 32)	-47067.0	NM_009464	22229.0	Mm.6254	NM_009464	ENSMUSG00000032942	Ucp3	AI645527|Slc25a9|UCP-3	uncoupling protein 3 (mitochondrial, proton carrier)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-70398294-4	chr4	70398196	70398396	+	792.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145990, intron 3 of 36)	RLTR16B_MM|LTR|ERVK	12139.0	NM_001313762	214444.0	Mm.370777	NM_145990	ENSMUSG00000039298	Cdk5rap2	2900018K03Rik|an|mKIAA1633	CDK5 regulatory subunit associated protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-75998140-2	chr15	75998040	75998240	+	711.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_177922, exon 11 of 14)	exon (NM_177922, exon 11 of 14)	4371.0	NM_177922	332110.0	Mm.40843	NM_177922	ENSMUSG00000063704	Mapk15	BC048082	mitogen-activated protein kinase 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-57734130-1	chr10	57734030	57734230	+	736.0	f0_balb.idr	intron (NM_001039050, intron 4 of 4)	MTEa|LTR|ERVL-MaLR	-50793.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-36070935-2	chr12	36070835	36071035	+	600.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-19444.0	NR_003649	432649.0	Mm.347860	NM_001014396	ENSMUSG00000059301	Gm5434	EG432649	ubiquitin-conjugating enzyme E2F (putative) pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-21814044-4	chr14	21813952	21814152	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28|LTR|ERVL	-17509.0	NM_011695	22334.0	Mm.262327	NM_011695	ENSMUSG00000021771	Vdac2	Vdac6|mVDAC2|mVDAC6	voltage-dependent anion channel 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-53809679-4	chr11	53809617	53809817	+	723.285706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033332, intron 3 of 3)	LTR33|LTR|ERVL	39244.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83716008-2	chr11	83715908	83716108	+	772.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7004.0	NM_007969	14038.0	Mm.1650	NM_007969	ENSMUSG00000000983	Wfdc18	Expi|Kal1|WDNM1	WAP four-disulfide core domain 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-65921925-2	chr5	65921825	65922025	+	624.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45199.0	NM_001081104	231252.0	Mm.140015	NM_001081104	ENSMUSG00000029205	Chrna9	2410015I05Rik|Acra9|EG666827|Gm8311	cholinergic receptor, nicotinic, alpha polypeptide 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-22370615-1	chr11	22370515	22370715	+	783.666687	f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-83820.0	NM_001252515	216565.0	Mm.491265	NM_153078	ENSMUSG00000042302	Ehbp1	AF424697|Flj21950|NACSIN	EH domain binding protein 1	protein-coding	3.55364246987297	2.5707666735827	3.19739031548048	3.64231618075844	1.80568220567938	1.49821015464704	2.49859206337286	2.26857419594385	-2.37773522800425	0.00225957827743137	0.0365369544105412
Merged-chr16-37575528-2	chr16	37575428	37575628	+	860.0833130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4625.0	NR_027778	15233.0	Mm.157442	NM_013547	ENSMUSG00000022821	Hgd	Hgo|aku	homogentisate 1, 2-dioxygenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119480365-2	chr11	119480265	119480465	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153849, intron 2 of 3)	MTC|LTR|ERVL-MaLR	10870.0	NR_153849	78439.0	Mm.440446	NR_153849	ENSMUSG00000109408	A930037H05Rik	Gm44935	RIKEN cDNA A930037H05 gene	ncRNA	-0.612862104462793	-0.603023657136216	-0.436483113010163	-0.09759532805449	-0.612251794808071	-0.602291994805762	-0.286382427809637	-0.608315411505176	-1.15661427714517	0.67039920462205	1
Merged-chr19-41268044-2	chr19	41267944	41268144	+	554.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4040.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-89198910-1	chr9	89198810	89199010	+	1000.0	f0_balb.idr	promoter-TSS (NM_007534)	promoter-TSS (NM_007534)	-363.0	NM_007534	12045.0	Mm.479217	NM_007534	ENSMUSG00000089929	Bcl2a1b	A1-b	B cell leukemia/lymphoma 2 related protein A1b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-84112241-4	chr17	84112156	84112356	+	807.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33596.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-89973896-3	chr9	89973795	89973995	+	704.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357743, intron 8 of 26)	intron (NM_001357743, intron 8 of 26)	64120.0	NM_001357743	19417.0	Mm.44561	NM_011245	ENSMUSG00000032356	Rasgrf1	AI844718|CDC25|CDC25Mm|Gnrp|Grf1|Grfbeta|P190-A|Ras-GRF1|p190|p190RhoGEF	RAS protein-specific guanine nucleotide-releasing factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-25768003-3	chr14	25767896	25768096	+	768.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001101433, intron 1 of 3)	intron (NM_001101433, intron 1 of 3)	860.0	NM_001101433	71918.0	Mm.41904	NM_001101433	ENSMUSG00000055538	Zcchc24	2310047A01Rik	zinc finger, CCHC domain containing 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97321219-1	chr6	97321119	97321319	+	682.0	f1_c57bl6.idr	intron (NM_145148, intron 12 of 23)	intron (NM_145148, intron 12 of 23)	-68439.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-48875316-2	chr13	48875216	48875416	+	606.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-4431.0	NM_011078	18676.0	Mm.486213	NM_011078	ENSMUSG00000038025	Phf2	GRC5	PHD finger protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-26696889-3	chr8	26696753	26696953	+	899.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	127570.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	3.05030705764729	2.91886534810583	2.60079905020674	2.73923207842233	2.94255403053267	1.54261408946353	1.77119804511339	3.28988372106955	-0.414963110328534	0.619597447732278	0.978663311075481
Merged-chr15-88145795-1	chr15	88145695	88145895	+	551.0	f0_balb.idr	Intergenic	Intergenic	-169079.0	NR_045281	328579.0	Mm.146839	NR_045281	ENSMUSG00000116331	B230214G05Rik	B230214G05	RIKEN cDNA B230214G05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-114404346-4	chr6	114404222	114404422	+	893.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252642, intron 1 of 1)	intron (NM_001252642, intron 1 of 1)	656.0	NM_001252643	15465.0	Mm.333327	NM_008285	ENSMUSG00000053004	Hrh1	Bphs|H1R|HH1R|Hir	histamine receptor H1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90026879-2	chr2	90026779	90026979	+	829.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-4815.0	NM_021368	258206.0	Mm.377377	NM_021368	ENSMUSG00000075069	Olfr1264	MOR236-1|Mor16|Ors16	olfactory receptor 1264	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-32292578-3	chr12	32292481	32292681	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	C-rich|Low_complexity|Low_complexity	-83932.0	NM_001146200	30955.0	Mm.101369	NM_020272	ENSMUSG00000020573	Pik3cg	5830428L06Rik|PI3Kgamma|p110gamma	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-122372871-3	chr3	122372774	122372974	+	977.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46883.0	NM_013867	29815.0	Mm.45815	NM_013867	ENSMUSG00000028121	Bcar3	AI131758|AND-34	breast cancer anti-estrogen resistance 3	protein-coding	3.69408151781841	4.89434385620676	3.77908525929683	5.17315455064497	3.91790557307708	4.2489940474213	4.04208038834097	4.65042478185567	-0.381350461111223	0.417514675497599	0.897409723507739
Merged-chr18-38978052-3	chr18	38977946	38978146	+	831.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15099.0	NM_001361073	71302.0	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122104407-2	chr5	122104307	122104507	+	709.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010861, intron 4 of 6)	intron (NM_010861, intron 4 of 6)	3456.0	NM_010861	17906.0	Mm.1529	NM_010861	ENSMUSG00000013936	Myl2	MLC-2|MLC-2s/v|MLC-2v|Mlc2v|Mylpc	myosin, light polypeptide 2, regulatory, cardiac, slow	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-65806590-4	chr11	65806484	65806684	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026107)	promoter-TSS (NM_026107)	-591.0	NM_001302374	52712.0	Mm.340052	NM_026107	ENSMUSG00000018347	Zkscan6	1700128E15Rik|D11Ertd714e|KOX11|Zfp535|Znf18	zinc finger with KRAB and SCAN domains 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-134791213-4	chr1	134791104	134791304	+	989.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081307, intron 18 of 23)	intron (NM_001081307, intron 18 of 23)	12517.0	NR_015606	329251.0	Mm.188709	NM_001081307	ENSMUSG00000073557	Ppp1r12b	1810037O03Rik|9530009M10Rik|AI132431|Mypt2	protein phosphatase 1, regulatory (inhibitor) subunit 12B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-43464263-2	chr1	43464163	43464363	+	882.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010879, intron 1 of 4)	MIRb|SINE|MIR	18512.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-20242905-2	chr11	20242805	20243005	+	819.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172260, intron 1 of 6)	intron (NM_172260, intron 1 of 6)	6519.0	NM_172260	216543.0	Mm.260314	NM_172260	ENSMUSG00000044066	Cep68	6030463E10Rik|AI481761|BC027174|Kiaa0582	centrosomal protein 68	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-29974980-2	chr13	29974880	29975080	+	598.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010093, intron 1 of 6)	intron (NM_010093, intron 1 of 6)	9411.0	NM_001289920	13557.0	Mm.268356	NM_010093	ENSMUSG00000016477	E2f3	E2F3b|E2f3a	E2F transcription factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91860096-2	chr16	91859996	91860196	+	680.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110275, intron 24 of 28)	intron (NM_001110275, intron 24 of 28)	71534.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-97929688-4	chr3	97929574	97929774	+	974.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033779)	promoter-TSS (NM_001033779)	-499.0	NM_001033779	433632.0	Mm.212421	NM_001033779		Gm5544	EG433632	predicted gene 5544	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-24936154-2	chr2	24936054	24936254	+	731.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162485)	promoter-TSS (NM_001162485)	-873.0	NM_178408	215705.0	Mm.45275	NM_178408	ENSMUSG00000026972	Arrdc1	AI957342|BC004091	arrestin domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5576012-6	chr17	5575822	5576022	+	954.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	L2a|LINE|L2	83322.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-55961676-4	chr7	55961569	55961769	+	946.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015495)	promoter-TSS (NR_015495)	824.0	NM_001256133	93790.0	Mm.37249	NM_023647	ENSMUSG00000030452	Nipa2	2600017P10Rik|3830408P04Rik|AB041581	non imprinted in Prader-Willi/Angelman syndrome 2 homolog (human)	protein-coding	2.70792179719085	2.378345445448	2.75421027328716	2.67987168184959	2.15134227863736	2.39494401090327	2.45211955123658	2.59843207845705	-0.509762238385425	0.497313809178643	0.936897994490085
Merged-chr4-132797710-2	chr4	132797610	132797810	+	668.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1346.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75453527-2	chr11	75453427	75453627	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_138950, exon 1 of 10)	exon (NM_138950, exon 1 of 10)	1190.0	NM_138950	192652.0	Mm.340378	NM_138950	ENSMUSG00000045374	Wdr81	BC054822|Gm883|mFLJ00182|nur5	WD repeat domain 81	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-86051241-4	chr15	86051146	86051346	+	784.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6449.0	NM_172611	223752.0	Mm.24442	NM_172611	ENSMUSG00000035900	Gramd4	9930016O13	GRAM domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-62044329-4	chr18	62044260	62044460	+	921.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	91285.0	NM_172628	225608.0	Mm.262320	NM_172628	ENSMUSG00000045629	Sh3tc2	D430044G18Rik	SH3 domain and tetratricopeptide repeats 2	protein-coding	1.20244295597078	0.282386902922103	0.273558245181507	0.455472285989478	1.21890858091502	0.284363090069468	0.275514312951108	0.459032785566746	0.0403773627024457	0.982912021594868	1
Merged-chr7-127876201-4	chr7	127876092	127876292	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001362191)	promoter-TSS (NM_001362191)	-550.0	NM_001362191	244219.0	Mm.207872	NM_146259	ENSMUSG00000049728	Zfp668	BC030314|E130018B19Rik|Znf668	zinc finger protein 668	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-174328621-2	chr2	174328521	174328721	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001310083, exon 2 of 13)	5' UTR (NM_001310083, exon 2 of 13)	707.0	NR_003258	14683.0	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-47581697-3	chr9	47581594	47581794	+	840.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	51342.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	-2.18243820993087	-2.15538464093652	-2.16356586349869	-2.17028616330028	-2.18053909940952	-2.15361173587851	-2.16171381403791	-2.0403552525549	0.759018020146679	0.829933115115583	1
Merged-chr7-141122749-2	chr7	141122649	141122849	+	810.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	-4943.0	NM_178381	71345.0	Mm.235813	NM_178381	ENSMUSG00000054662	Ano9	5430425C04Rik|Tmem16j|Tp53i5|Trp53i5	anoctamin 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52024572-2	chr13	52024472	52024672	+	726.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72169.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-73530048-3	chr2	73529935	73530135	+	755.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153138)	promoter-TSS (NM_153138)	-548.0	NM_153138	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152922084-3	chr1	152922000	152922200	+	733.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19454.0	NM_001005507	226517.0	Mm.270775	NM_001005507	ENSMUSG00000042772	Smg7	9430023P16Rik|mKIAA0250	Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-36700067-4	chr13	36699951	36700151	+	962.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M3|LINE|L1	34426.0	NM_153529	68404.0	Mm.232930	NM_153529	ENSMUSG00000039114	Nrn1	0710008J23Rik|Cpg15|Nrn	neuritin 1	protein-coding	2.2700820526557	1.27011393279782	1.49023685231666	2.20022951172522	2.10191853265987	1.54545334509442	2.57837225797352	2.72146189153177	1.03359748593584	0.304043895650548	0.805768573577736
Merged-chr5-115281367-1	chr5	115281267	115281467	+	779.0	f1_c57bl6.idr	intron (NM_026504, intron 1 of 6)	URR1B|DNA|hAT-Charlie	1665.0	NM_026504	52064.0	Mm.290142	NM_026504	ENSMUSG00000041733	Coq5	1810014G04Rik|D5Ertd33e	coenzyme Q5 methyltransferase	protein-coding	0.728507376043215	2.11851289014287	1.75290397009846	0.754176966814657	1.69600874865872	0.792031436586187	0.773288109728217	1.59395016353978	-0.644423238803076	0.666585456237451	0.992515300319318
Merged-chr1-135753111-4	chr1	135753017	135753217	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_153810)	TTS (NR_153810)	-12968.0	NM_013750	27280.0	Mm.34346	NM_013750	ENSMUSG00000041801	Phlda3	Tih1	pleckstrin homology like domain, family A, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-95072191-1	chr9	95072091	95072291	+	551.0	f0_balb.idr	intron (NM_177909, intron 12 of 15)	ORR1F|LTR|ERVL-MaLR	320362.0	NR_106116	102465763.0		NR_106116	ENSMUSG00000098251	Mir7656	Gm27614|mmu-mir-7656	microRNA 7656	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-78046201-3	chr2	78046103	78046303	+	879.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR33A_|LTR|ERVL	-4974.0	NR_108098	78158.0	Mm.78473	NR_108098	ENSMUSG00000085431	4930440I19Rik	-	RIKEN cDNA 4930440I19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89996315-2	chr3	89996215	89996415	+	571.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001282032, intron 2 of 5)	intron (NM_001282032, intron 2 of 5)	1788.0	NM_001310681	23897.0	Mm.256035	NM_011826	ENSMUSG00000027944	Hax1	HAX-1|HSP1BP-1|Hs1bp1|SIG-111|Silg111|mHAX-1s	HCLS1 associated X-1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-112582326-2	chr12	112582226	112582426	+	605.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6458.0	NM_198411	70435.0	Mm.250193	NM_198411	ENSMUSG00000037679	Inf2	2610204M08Rik|AA589465|AW125550|EG629699	inverted formin, FH2 and WH2 domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-118905595-4	chr2	118905512	118905712	+	915.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045523, intron 1 of 6)	intron (NM_001045523, intron 1 of 6)	3997.0	NM_001045523	228536.0	Mm.330487	NM_001045523	ENSMUSG00000040007	Bahd1	AL022997|AW541238|Gm117|mKIAA0945	bromo adjacent homology domain containing 1	protein-coding	0.709883388417667	2.51349687033169	0.290246325491094	1.40333399731595	0.246938395701583	0.316485269988154	0.295090562312923	0.275938539196109	-5.26049401238325	0.0016610616392575	0.0292792618234253
Merged-chr11-119946285-2	chr11	119946182	119946382	+	875.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037754, intron 1 of 13)	(TG)n|Simple_repeat|Simple_repeat	3190.0	NM_130862	108100.0	Mm.197534	NM_130862	ENSMUSG00000025372	Baiap2	IRSp53|R75030	brain-specific angiogenesis inhibitor 1-associated protein 2	protein-coding	1.12490429797469	2.0727297661779	2.85587132601821	2.18718596624052	1.85108738391806	1.23302197395209	2.65888955888759	1.95001518879976	-0.412514202879366	0.700386943817391	0.998431161219273
Merged-chr14-51941393-4	chr14	51941274	51941474	+	997.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18601.0	NM_001011687	497071.0	Mm.378602	NM_001011687	ENSMUSG00000068392	Rnase13	-	ribonuclease, RNase A family, 13 (non-active)	protein-coding	2.81930983944218	3.30355220297773	2.95123339508606	2.98374115809387	4.04252453903299	4.18177578193924	4.1072920609006	3.5554483404557	1.48767015575287	0.00482163126208814	0.0650486490433285
Merged-chr4-139167507-1	chr4	139167407	139167607	+	595.0	f1_c57bl6.idr	Intergenic	Intergenic	13148.0	NR_033543	100038595.0	Mm.385206	NR_033543	ENSMUSG00000073739	Gm16287	-	predicted gene 16287	ncRNA	2.50537442377066	2.07559776243986	2.1383627810162	1.14850261073401	1.70529058379245	3.06671446915177	2.15652958624678	1.15328462538318	0.385489430242731	0.720488719021628	0.998431161219273
Merged-chr3-108886277-4	chr3	108886152	108886352	+	717.950012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001165965, intron 2 of 11)	intron (NM_001165965, intron 2 of 11)	3756.0	NM_177091	320181.0	Mm.244233	NM_177091	ENSMUSG00000045326	Fndc7	E230011A21Rik	fibronectin type III domain containing 7	protein-coding	-1.8418762459921	-1.8125357239735	-1.82140854000656	-1.82869693527674	-1.56059678980999	-1.8106129477253	-1.81939992894326	-1.82739231600805	1.3620893379502	0.699511506488145	1
Merged-chr19-55660926-2	chr19	55660826	55661026	+	799.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045318, intron 2 of 3)	intron (NR_045318, intron 2 of 3)	41278.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-81931886-2	chr3	81931786	81931986	+	594.3000490000001	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177662)	promoter-TSS (NM_177662)	-715.0	NM_177662	229445.0	Mm.254642	NM_177662	ENSMUSG00000028015	Ctso	A330105D01Rik|AI118514	cathepsin O	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3835263-3	chr12	3835127	3835327	+	649.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001271753, exon 2 of 23)	exon (NM_001271753, exon 2 of 23)	27017.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171284221-10	chr1	171284102	171284302	+	901.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013919, intron 6 of 12)	RLTR17B_Mm|LTR|ERVK	-3016.0	NM_008911	19044.0	Mm.266888	NM_008911	ENSMUSG00000062729	Ppox	Ppo	protoporphyrinogen oxidase	protein-coding	2.67347676257245	2.33773124165028	2.96991842810385	1.88667142732579	2.53254001753149	2.35446300961226	2.74027080389407	2.06412613067306	-0.187898356820246	0.815420083330359	0.998431161219273
Merged-chr9-100590645-2	chr9	100590545	100590745	+	615.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19560.0	NM_001101483	245020.0	Mm.236289	NM_001101483	ENSMUSG00000070287	Slc35g2	Gm519|Tmem22	solute carrier family 35, member G2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-54229016-2	chr6	54228916	54229116	+	758.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163640, intron 6 of 12)	intron (NM_001163640, intron 6 of 12)	-35842.0	NM_001311133	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-142384876-2	chr7	142384776	142384976	+	655.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009983, intron 2 of 8)	intron (NM_009983, intron 2 of 8)	2994.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-39592651-4	chr6	39592548	39592748	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358797)	promoter-TSS (NM_001358797)	83.0	NR_152450	68198.0	Mm.29415	NM_026612	ENSMUSG00000002416	Ndufb2	1810011O01Rik|8kDa|AGGG|AI325567|CI-AGGG	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31462431-4	chr14	31462354	31462554	+	730.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	-26354.0	NM_011894	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-103345225-2	chr14	103345125	103345325	+	580.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_207215, intron 1 of 84)	intron (NM_207215, intron 1 of 84)	1575.0	NM_207215	105689.0	Mm.6478	NM_207215	ENSMUSG00000033004	Mycbp2	AU023734|AW107953|AW546647|C130061D10Rik|Pam|Phr1|R75243	MYC binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4864616-2	chr16	4864516	4864716	+	564.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_030192, exon 14 of 16)	exon (NM_030192, exon 14 of 16)	15235.0	NM_145359	207740.0	Mm.268895	NM_145359	ENSMUSG00000039568	Ubald1	1500031H01Rik|BC013706|Fam100a	UBA-like domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-90603547-4	chr5	90603442	90603642	+	926.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028478, exon 11 of 11)	3' UTR (NM_028478, exon 11 of 11)	36985.0	NM_028478	73246.0	Mm.30172	NM_028478	ENSMUSG00000029370	Rassf6	1600016B17Rik	Ras association (RalGDS/AF-6) domain family member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-11687023-3	chr18	11686924	11687124	+	900.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081223, intron 4 of 18)	intron (NM_001081223, intron 4 of 18)	29675.0	NM_001081223	225182.0	Mm.154275	NM_175458	ENSMUSG00000041238	Rbbp8	9930104E21Rik|CtIP|RBBP-8|RIM|SAE2	retinoblastoma binding protein 8, endonuclease	protein-coding	1.32018427954393	1.08114443632269	0.69298112285517	1.72768785565945	0.44714575285009	0.486493477719444	0.473975443197023	0.463082061742647	-4.79717833175011	0.00427037201344268	0.0591183731737908
Merged-chr7-65693470-4	chr7	65693309	65693509	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026795)	promoter-TSS (NM_026795)	-8.0	NM_178056	68634.0	Mm.476828	NM_026795	ENSMUSG00000078681	Tm2d3	1110025I09Rik|5930422O05Rik|Blp2	TM2 domain containing 3	protein-coding	-0.133577490940407	-0.276312777815883	-0.443417027848361	-0.445501575855081	-0.126459351319749	-0.27234417285222	-0.442817386580239	-0.445138873604566	0.040964281577343	0.986726794986629	1
Merged-chr2-163669254-1	chr2	163669154	163669354	+	549.0	f1_c57bl6.idr	intron (NM_001039390, intron 2 of 4)	L1_Mus2|LINE|L1	10796.0	NM_001164053	18769.0	Mm.10091	NM_011106	ENSMUSG00000035268	Pkig	PKIgamma	protein kinase inhibitor, gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-140989629-3	chr4	140989492	140989692	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164366, intron 1 of 28)	intron (NM_001164366, intron 1 of 28)	2719.0	NM_001164366	74772.0	Mm.205625	NM_029097	ENSMUSG00000036622	Atp13a2	1110012E06Rik|AA589443	ATPase type 13A2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-18615995-3	chr19	18615895	18616095	+	709.733337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017375, intron 1 of 9)	B3A|SINE|B2	15818.0	NM_017375	20409.0	Mm.172222	NM_017375	ENSMUSG00000024725	Ostf1	C78236|SH3P2|Sh3d3	osteoclast stimulating factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-25052573-3	chr16	25052459	25052659	+	947.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7080.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131827932-4	chr1	131827847	131828047	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173865)	promoter-TSS (NM_173865)	-65.0	NM_173865	98396.0	Mm.389181	NM_173865	ENSMUSG00000013275	Slc41a1	AI573938|B230315F01Rik	solute carrier family 41, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-77972352-3	chr10	77972243	77972443	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2471.0	NM_138301	28240.0	Mm.276762	NM_138301	ENSMUSG00000009292	Trpm2	9830168K16Rik|C79133|LTRPC2|TRPC7|Trp7|Trrp7	transient receptor potential cation channel, subfamily M, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191092510-7	chr1	191092406	191092606	+	981.095215	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5908.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	2.2516700220229	1.29306037355964	2.81166359251999	1.86710300662661	2.67767846420529	2.00860107318295	2.90896031971132	1.234134446857	0.401740574790473	0.696245879244805	0.997923870727665
Merged-chr7-47023730-4	chr7	47023612	47023812	+	941.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15298.0	NM_175318	101685.0	Mm.155687	NM_175318	ENSMUSG00000049516	Spty2d1	5830435K17Rik|AI852426|P16H6	SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-181161644-4	chr2	181161540	181161740	+	857.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4625.0	NM_007906	13628.0	Mm.2645	NM_007906	ENSMUSG00000016349	Eef1a2	EEF1AL|EF-1-alpha-2|Eef1a|S1|STN|wasted|wst	eukaryotic translation elongation factor 1 alpha 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3780492-4	chr12	3780394	3780594	+	999.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007886, intron 18 of 18)	intron (NM_007886, intron 18 of 18)	-26486.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-54258148-2	chr5	54258048	54258248	+	678.875	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3_Mus|LINE|L1	-91844.0	NR_038045	330086.0	Mm.254449	NM_177871	ENSMUSG00000105912	Gm10440	D130065D13	predicted gene 10440	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-36318442-3	chr3	36318354	36318554	+	795.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-96179.0	NM_198192	229214.0	Mm.330975	NM_198192	ENSMUSG00000058400	Qrfpr	AQ27|Gpr103|SP9155	pyroglutamylated RFamide peptide receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-120502210-4	chr5	120502124	120502324	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023625, intron 1 of 11)	intron (NM_023625, intron 1 of 11)	1399.0	NM_023625	71772.0	Mm.100065	NM_023625	ENSMUSG00000029598	Plbd2	1300012G16Rik|AU019810|P76	phospholipase B domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81461749-2	chr10	81461649	81461849	+	821.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001311127, exon 11 of 11)	3' UTR (NM_001311127, exon 11 of 11)	11382.0	NM_001311127	319586.0	Mm.152689	NM_176954	ENSMUSG00000034818	Celf5	4930565A21Rik|Brunol5	CUGBP, Elav-like family member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-44269719-4	chr12	44269619	44269819	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026164, intron 1 of 9)	intron (NM_026164, intron 1 of 9)	565.0	NM_026164	67452.0	Mm.54126	NM_026164	ENSMUSG00000036257	Pnpla8	1200006O19Rik|AI467579|Ipla2(gamma)	patatin-like phospholipase domain containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89340729-4	chr3	89340657	89340857	+	794.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037722, intron 20 of 22)	intron (NM_001037722, intron 20 of 22)	-2729.0	NM_007910	13639.0	Mm.16332	NM_007910	ENSMUSG00000028040	Efna4	EFL-4|Epl4|LERK-4	ephrin A4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-35752058-4	chr16	35751954	35752154	+	691.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153550, intron 1 of 8)	RLTR13D|LTR|ERVK	17302.0	NM_153550	224132.0	Mm.24094	NM_153550	ENSMUSG00000022848	Dirc2	RCC4	disrupted in renal carcinoma 2 (human)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-78286166-2	chr10	78286066	78286266	+	681.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_053014, intron 3 of 9)	intron (NM_053014, intron 3 of 9)	-41524.0	NM_001081055	216131.0	Mm.27539	NM_001081055	ENSMUSG00000000374	Trappc10	B230307C21Rik|Gm870|Tmem1|b2b2416Clo|b2b2613Clo	trafficking protein particle complex 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-75229995-4	chr14	75229871	75230071	+	821.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001247984, exon 16 of 16)	3' UTR (NM_001247984, exon 16 of 16)	-12316.0	NM_019775	56373.0	Mm.24242	NM_019775	ENSMUSG00000021999	Cpb2	1110032P04Rik|4930405E17Rik|AI255929|CPR|Cpu|TAFI	carboxypeptidase B2 (plasma)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-75490930-4	chr10	75490833	75491033	+	995.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MYSERV6-int|LTR|ERVK	26448.0	NM_175133	68778.0	Mm.29382	NM_175133	ENSMUSG00000033416	Gucd1	1110038D17Rik	guanylyl cyclase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47509148-3	chr17	47509026	47509226	+	924.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081635, intron 1 of 6)	intron (NM_001081635, intron 1 of 6)	4075.0	NM_001081635	12445.0	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-79928970-1	chr15	79928870	79929070	+	552.0	f0_balb.idr	intron (NM_144811, intron 2 of 6)	intron (NM_144811, intron 2 of 6)	3676.0	NM_144811	52609.0	Mm.323442	NM_144811	ENSMUSG00000053411	Cbx7	1600014J01Rik|AI851678|D15Ertd417e	chromobox 7	protein-coding	1.62321382905418	2.87809783667559	1.27158425176614	1.89419118962601	1.80728019487301	3.06101735251033	2.13109235207663	2.86395578256627	1.04659626758394	0.274550519187984	0.778541872770812
Merged-chr6-125243816-3	chr6	125243721	125243921	+	861.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-6794.0	NM_001286753	21940.0	Mm.367714	NM_001033126	ENSMUSG00000030336	Cd27	S152|Tnfrsf7|Tp55	CD27 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-55149252-4	chr9	55149150	55149350	+	961.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346657)	promoter-TSS (NM_001346657)	-119.0	NM_180600	109161.0	Mm.207894	NM_180600	ENSMUSG00000032307	Ube2q2	3010021M21Rik	ubiquitin-conjugating enzyme E2Q family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43494085-1	chr4	43493985	43494185	+	1000.0	f1_c57bl6.idr	intron (NM_001037913, intron 2 of 5)	intron (NM_001037913, intron 2 of 5)	720.0	NM_001037913	622404.0	Mm.289109	NM_001037913	ENSMUSG00000028461	Ccdc107	-	coiled-coil domain containing 107	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71000513-2	chr17	71000413	71000613	+	966.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_026064, intron 1 of 3)	intron (NM_026064, intron 1 of 3)	2020.0	NM_026064	67268.0	Mm.489605	NM_026064	ENSMUSG00000024048	Myl12a	2900073G15Rik|AI838292|C80200	myosin, light chain 12A, regulatory, non-sarcomeric	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67284921-4	chr10	67284811	67285011	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001036293, intron 1 of 3)	CpG	370.0	NM_001036293	641340.0	Mm.136223	NM_001036293	ENSMUSG00000075000	Nrbf2	NRBF-2	nuclear receptor binding factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-93552794-2	chr4	93552694	93552894	+	698.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-217283.0	NM_026954	69136.0	Mm.171558	NM_026954	ENSMUSG00000054000	Tusc1	2200001D17Rik|TSG-9	tumor suppressor candidate 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-34390925-4	chr7	34390824	34391024	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-1219.0	NM_025948	67070.0	Mm.276503	NM_025948	ENSMUSG00000066568	Lsm14a	2700023B17Rik|AA407828|AU017544|Tral|mRAP55A	LSM14A mRNA processing body assembly factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-12214605-4	chr15	12214530	12214730	+	860.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356498, intron 1 of 15)	intron (NM_001356498, intron 1 of 15)	9602.0	NM_172958	268783.0	Mm.54460	NM_172958	ENSMUSG00000039458	Mtmr12	3Pap|4932703C11|C730015A02Rik|Pip3ap|mKIAA1682	myotubularin related protein 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-22862296-2	chr8	22862196	22862396	+	699.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081149, exon 3 of 18)	exon (NM_001081149, exon 3 of 18)	2757.0	NM_001081149	244349.0	Mm.182776	NM_001081149	ENSMUSG00000031540	Kat6a	1500036M03|9930021N24Rik|MOZ|Myst3|Zfp220	K(lysine) acetyltransferase 6A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-117169274-4	chr2	117169160	117169360	+	870.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001277256, intron 4 of 4)	intron (NM_001277256, intron 4 of 4)	-15867.0	NR_030440	732489.0		NR_030440	ENSMUSG00000076376	Mir674	Mirn674|mir-674|mmu-mir-674	microRNA 674	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-45558095-4	chr17	45557978	45558178	+	919.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008690, intron 1 of 5)	intron (NM_008690, intron 1 of 5)	2378.0	NM_001304956	18037.0	Mm.57043	NM_008690	ENSMUSG00000023947	Nfkbie	I-kappa-B-epsilon|IKBE|IkB-E|NF-kappa-BIE|ikB-epsilon	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, epsilon	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-63595325-2	chr4	63595225	63595425	+	848.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	5439.0	NM_001354647	670833.0	Mm.32213	NM_001354647	ENSMUSG00000084782	Gm11213	-	predicted gene 11213	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-135601179-1	chr3	135601079	135601279	+	941.0	f1_c57bl6.idr	intron (NM_008689, intron 17 of 24)	intron (NM_008689, intron 17 of 24)	90368.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	0.194726119178693	-0.318442000187192	-0.0166508795593355	-0.325057604899457	0.0283040051864097	-0.317595906072156	-0.321360155442906	-0.32455637833833	-1.2604713106486	0.617729878261684	1
Merged-chr2-129297800-4	chr2	129297681	129297881	+	946.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181589)	promoter-TSS (NM_181589)	411.0	NR_040371	100503468.0	Mm.446943	NR_040371	ENSMUSG00000085498	Gm14023	-	predicted gene 14023	ncRNA	4.15036991660114	4.69916094098957	4.59958359810305	4.35654281156002	2.67535450967115	3.9262501489618	3.53583828135829	3.32350257928007	-1.44162484376075	0.00256072257137464	0.0402219895233493
Merged-chr9-120110783-4	chr9	120110688	120110888	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144793, intron 1 of 6)	CpG	389.0	NM_144793	208638.0	Mm.236656	NM_144793	ENSMUSG00000032519	Slc25a38	AV019094|BC010801|appoptosin	solute carrier family 25, member 38	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-32494327-2	chr19	32494227	32494427	+	578.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010799, intron 3 of 4)	intron (NM_010799, intron 3 of 4)	8558.0	NM_010799	17330.0	Mm.255116	NM_010799	ENSMUSG00000024896	Minpp1	AA408516	multiple inositol polyphosphate histidine phosphatase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10710113-2	chr19	10710013	10710213	+	591.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361959, intron 2 of 3)	intron (NM_001361959, intron 2 of 3)	9345.0	NM_001361964	107305.0	Mm.19091	NM_181403	ENSMUSG00000048832	Vps37c	5730409F24Rik|AU042646	vacuolar protein sorting 37C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129174654-3	chr2	129174570	129174770	+	852.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6003.0	NR_045264	100048701.0	Mm.428544	NR_045264	ENSMUSG00000084826	AI847159	-	expressed sequence AI847159	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117191535-5	chr11	117191351	117191551	+	915.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	-8210.0	NM_001113486	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120938128-3	chr11	120938046	120938246	+	864.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5274.0	NM_027745	71276.0	Mm.275751	NM_027745	ENSMUSG00000048445	Ccdc57	4933434G05Rik	coiled-coil domain containing 57	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-121543719-2	chr5	121543619	121543819	+	720.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010765, intron 1 of 13)	intron (NM_010765, intron 1 of 13)	2173.0	NM_010765	17165.0	Mm.272206	NM_010765	ENSMUSG00000029454	Mapkapk5	MK5|PRAK	MAP kinase-activated protein kinase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117288414-4	chr10	117288299	117288499	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_013590, exon 4 of 4)	3' UTR (NM_013590, exon 4 of 4)	4469.0	NM_013590	17110.0	Mm.177539	NM_013590	ENSMUSG00000069515	Lyz1	Lyz|Lyzf3|Lzp-s	lysozyme 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65740325-2	chr9	65740219	65740419	+	659.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172536, intron 2 of 9)	intron (NM_172536, intron 2 of 9)	63771.0	NM_001301307	18247.0	Mm.116749	NM_010952	ENSMUSG00000040652	Oaz2	AZ-2|AZ2|Oaz2-ps|Sez15	ornithine decarboxylase antizyme 2	protein-coding	-0.735561205416019	-0.725802219566502	-0.729007106423444	-0.203745749985781	-0.734954117726819	-0.725078794455307	-0.728300872724531	-0.304367984195515	-0.384302916596532	0.897289854629639	1
Merged-chr15-41790825-3	chr15	41790740	41790940	+	789.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001130163, intron 1 of 13)	MIR3|SINE|MIR	1325.0	NM_130885	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-62492301-2	chr10	62492201	62492401	+	806.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-5496.0	NM_001358543	30930.0	Mm.260703	NM_133672	ENSMUSG00000020078	Vps26a	AA407240|HB58|Vps26	VPS26 retromer complex component A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-98018934-2	chr5	98018833	98019033	+	574.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133738, intron 3 of 16)	MIRb|SINE|MIR	12029.0	NM_133738	71914.0	Mm.24842	NM_133738	ENSMUSG00000029338	Antxr2	2310046B19Rik|AW561899|CMG-2|CMG2|cI-35	anthrax toxin receptor 2	protein-coding	1.44587375467953	2.0050443369975	1.00389364315701	2.13206721773584	1.68727348446206	1.63615199264042	1.00811369268408	1.53098900287522	-0.74814927885082	0.535407016901238	0.95286627222167
Merged-chr6-113657163-3	chr6	113657047	113657247	+	897.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 2 of 11)	intron (NM_001113553, intron 2 of 11)	18680.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-45111734-4	chr2	45111660	45111860	+	991.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_110571)	promoter-TSS (NR_110571)	-500.0	NR_110571	433424.0	Mm.441408	NR_110571	ENSMUSG00000052248	Zeb2os	Gm13476|Zeb2nat	zinc finger E-box binding homeobox 2, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-135732507-2	chr1	135732407	135732607	+	678.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007791, intron 1 of 5)	intron (NM_007791, intron 1 of 5)	3340.0	NM_007791	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30560615-2	chr7	30560515	30560715	+	867.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290569)	promoter-TSS (NM_001290569)	-969.0	NM_001290569	75660.0	Mm.379242	NM_029377	ENSMUSG00000036845	Lin37	1810054G18Rik	lin-37 homolog (C. elegans)	protein-coding	0.863774820646821	1.57544087624265	0.713152303717683	1.81145516974349	1.47508526478442	0.730552308856758	0.716317090798723	1.22639030272491	-0.923744944562748	0.533358244479464	0.952172237466215
Merged-chr12-116262982-4	chr12	116262887	116263087	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146039)	promoter-TSS (NM_146039)	38.0	NM_146039	217935.0	Mm.31382	NM_146039	ENSMUSG00000042050	Wdr60	D430033N04Rik	WD repeat domain 60	protein-coding	5.54606585496542	5.76225508172733	5.6025888527338	4.84010243695837	5.14050584220645	5.07395705706782	5.3266373167354	4.82210402852907	-0.433870821617897	0.159735940791381	0.619354256974287
Merged-chr5-124016725-2	chr5	124016625	124016825	+	810.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177876, intron 1 of 3)	intron (NM_177876, intron 1 of 3)	15535.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-121903946-3	chr14	121903885	121904085	+	731.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026861, intron 1 of 8)	intron (NM_026861, intron 1 of 8)	11789.0	NM_182806	110168.0	Mm.37405	NM_182806	ENSMUSG00000050350	Gpr18	-	G protein-coupled receptor 18	protein-coding	1.27258693093118	0.750567134030486	0.538401861216381	1.09230257349259	1.20907467684784	0.549420166284935	0.540391816669992	0.857903746965127	-0.599704414665378	0.71442656451149	1
Merged-chr15-95806201-2	chr15	95806101	95806301	+	564.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 1 of 19)	MTE2a|LTR|ERVL-MaLR	15358.0	NM_001253813	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-68918553-2	chr8	68918477	68918677	+	687.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38022.0	NM_008509	16956.0	Mm.1514	NM_008509	ENSMUSG00000015568	Lpl	-	lipoprotein lipase	protein-coding	-1.8418762459921	-1.8125357239735	-1.82140854000656	-1.82869693527674	-1.56059678980999	-1.8106129477253	-1.81939992894326	-1.82739231600805	1.3620893379502	0.699511506488145	1
Merged-chr19-8892990-4	chr19	8892887	8893087	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_176843)	promoter-TSS (NM_176843)	0.0	NM_176843	109077.0	Mm.290474	NM_176843	ENSMUSG00000071652	Ints5	1110055N21Rik|mKIAA1698	integrator complex subunit 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-97169601-4	chr15	97169561	97169761	+	896.741699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2417.0	NR_155279	102635594.0	Mm.392594	NR_155278	ENSMUSG00000116295	Gm32885	-	predicted gene, 32885	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72929999-2	chr6	72929899	72930099	+	566.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	28233.0	NM_001039392	19240.0	Mm.3532	NM_025284	ENSMUSG00000079523	Tmsb10	Ptmb10|Tb10	thymosin, beta 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-118300238-2	chr12	118300138	118300338	+	647.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166385, intron 2 of 5)	intron (NM_001166385, intron 2 of 5)	1202.0	NM_009239	20688.0	Mm.34699	NM_009239	ENSMUSG00000025323	Sp4	5730497N03Rik|HF-1b|HF1-b	trans-acting transcription factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-12740735-4	chr18	12740640	12740840	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181731)	promoter-TSS (NM_181731)	-615.0	NM_181731	71132.0	Mm.179740	NM_027687	ENSMUSG00000024430	Cabyr	1700016C01Rik|4933421A18Rik|CBP86|FSP-2	calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-76456405-3	chr11	76456310	76456510	+	904.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346670, intron 10 of 21)	intron (NM_001346670, intron 10 of 21)	12055.0	NM_001291186	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-62685451-4	chr2	62685346	62685546	+	957.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145523, intron 3 of 7)	intron (NM_145523, intron 3 of 7)	21119.0	NM_145523	227960.0	Mm.219877	NM_145523	ENSMUSG00000026893	Gca	5133401E04Rik|AI573844	grancalcin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-130578347-3	chr2	130578254	130578454	+	766.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	2185.0	NM_011025	18429.0	Mm.16745	NM_011025	ENSMUSG00000027301	Oxt	OT|Oxy	oxytocin	protein-coding	-2.18233058068552	-2.15536956715525	-2.16352280018114	-2.04193253143548	-2.18043796738662	-2.15360272754651	-2.16167708693786	-2.16902129354933	-0.683654500252594	0.846597994014493	1
Merged-chr4-81743166-3	chr4	81743058	81743258	+	750.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-256145.0	NR_030570	100124446.0		NR_030570	ENSMUSG00000077941	Mir466h	Mirn466h	microRNA 466h	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-132090019-4	chr2	132089932	132090132	+	880.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355431, intron 4 of 6)	intron (NM_001355431, intron 4 of 6)	55076.0	NM_001355431	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28420542-4	chr17	28420457	28420657	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010220, intron 5 of 10)	intron (NM_010220, intron 5 of 10)	-55341.0	NM_021478	22157.0	Mm.42102	NM_021478	ENSMUSG00000037446	Tulp1	Tulp1l	tubby like protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-108829096-3	chr6	108828994	108829194	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_138677, exon 1 of 12)	exon (NM_138677, exon 1 of 12)	453.0	NM_138677	192193.0	Mm.21596	NM_138677	ENSMUSG00000030104	Edem1	A130059K23Rik|EDEM|mKIAA0212	ER degradation enhancer, mannosidase alpha-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-38089330-3	chr16	38089230	38089430	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033221)	promoter-TSS (NR_033221)	-70.0	NR_033221	414072.0	Mm.483602	NR_033221		BC031361	-	cDNA sequence BC031361	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-42089410-4	chr19	42089293	42089493	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1042.0	NM_145501	84095.0	Mm.117037	NM_145501	ENSMUSG00000025178	Pi4k2a	Pi4k2	phosphatidylinositol 4-kinase type 2 alpha	protein-coding	4.55279818936493	4.57572848326674	4.58851897509293	5.66504240709588	4.80449989372722	4.82015830737221	4.46146968107303	5.17653978575082	-0.122775889454136	0.748266351231137	0.998431161219273
Merged-chr7-6286436-4	chr7	6286332	6286532	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024928)	promoter-TSS (NM_001024928)	-148.0	NM_001024928	384763.0	Mm.276279	NM_001024928	ENSMUSG00000054893	Zfp667	A830025F02Rik|Mip1|ZNF667	zinc finger protein 667	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-13499064-2	chr10	13498964	13499164	+	807.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-1964.0	NM_001330198	66848.0	Mm.26625	NM_025799	ENSMUSG00000019810	Fuca2	0610025O11Rik|5530401P20Rik	fucosidase, alpha-L- 2, plasma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129032318-4	chr4	129032227	129032427	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25944.0	NM_029219	75234.0	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69400413-2	chr11	69400307	69400507	+	598.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001017426, intron 20 of 22)	intron (NM_001017426, intron 20 of 22)	-2173.0	NM_025915	67020.0	Mm.390406	NM_025915	ENSMUSG00000045377	Tmem88	2600017H02Rik	transmembrane protein 88	protein-coding	2.13157523333734	2.67326626082131	1.21298371305231	2.25038850030232	1.37141953331178	1.90144462862254	1.98623437322767	2.04934168980894	-0.827022537994442	0.418012746581887	0.898051259428699
Merged-chr8-111259175-5	chr8	111258998	111259198	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009149, exon 1 of 26)	exon (NM_009149, exon 1 of 26)	104.0	NM_009149	20340.0	Mm.276271	NM_009149	ENSMUSG00000003316	Glg1	AI593353|AW537898|CFR|CFR-1|ESL-1|MG-160|MG160|Selel	golgi apparatus protein 1	protein-coding	2.96973059388674	2.15281802155241	2.23484428370563	2.41835021783955	2.99347488506724	1.98307964324934	2.38650878734359	2.03739804241918	-0.135305127635313	0.870573276744426	0.998431161219273
Merged-chr13-109823876-1	chr13	109823776	109823976	+	908.0	f0_balb.idr	intron (NM_011056, intron 7 of 16)	intron (NM_011056, intron 7 of 16)	-79933.0	NR_035442	100316683.0		NR_035442	ENSMUSG00000084651	Mir1904	Mirn1904|mmu-mir-1904	microRNA 1904	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-50371509-2	chr11	50371409	50371609	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6210.0	NM_021510	59013.0	Mm.21740	NM_021510	ENSMUSG00000007850	Hnrnph1	AI642080|E430005G16Rik|Hnrnph|Hnrph1	heterogeneous nuclear ribonucleoprotein H1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-179975282-2	chr2	179975182	179975382	+	815.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081092, intron 1 of 14)	intron (NM_001081092, intron 1 of 14)	1364.0	NM_001081092	228980.0	Mm.235542	NM_001081092	ENSMUSG00000039117	Taf4	135kDa|AI450312|TAFII130|TAFII135|Taf2c1|Taf4a	TATA-box binding protein associated factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-11740364-3	chr19	11740256	11740456	+	939.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7203.0	NM_008118	14603.0	Mm.456	NM_008118	ENSMUSG00000024682	Gif	AV073125	gastric intrinsic factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-31634651-4	chr12	31634580	31634780	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164090)	promoter-TSS (NM_001164090)	-22.0	NM_001164090	12033.0	Mm.242379	NM_007530	ENSMUSG00000020650	Bcap29	AW208404|Bap29	B cell receptor associated protein 29	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191307363-1	chr1	191307263	191307463	+	597.0	f1_balb.idr	intron (NM_025424, intron 3 of 3)	U1|snRNA|snRNA	10755.0	NM_025424	66208.0	Mm.46444	NM_025424	ENSMUSG00000037499	Nenf	1110060M21Rik|SCIRP10|Spuf	neuron derived neurotrophic factor	protein-coding	1.20810018192671	0.73308111972853	0.713484063079538	1.94282860244082	0.890645897901525	2.28145006714829	0.717865917431608	1.29780800458981	0.615059122576068	0.666600042194465	0.992515300319318
Merged-chr18-53862885-4	chr18	53862784	53862984	+	921.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152809, intron 1 of 12)	CpG	771.0	NM_152809	70425.0	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67100360-2	chr10	67100260	67100460	+	636.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3372.0	NM_178606	28193.0	Mm.41272	NM_178606	ENSMUSG00000019873	Reep3	D10Ucla1	receptor accessory protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-32147632-4	chr18	32147525	32147725	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8055.0	NM_001042767	19123.0	Mm.2786	NM_008934	ENSMUSG00000024386	Proc	PC	protein C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31373007-4	chr14	31372909	31373109	+	865.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011894, exon 9 of 9)	3' UTR (NM_011894, exon 9 of 9)	36371.0	NM_009796	12339.0	Mm.201535	NM_009796	ENSMUSG00000021893	Capn7	AU022319|PalBH	calpain 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126492656-2	chr8	126492556	126492756	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-17591.0	NM_001159907	212728.0	Mm.482479	NM_001159907	ENSMUSG00000090290	Tarbp1	Gm17296|Gm179	TAR RNA binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-12324236-2	chr15	12324136	12324336	+	869.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025673, intron 1 of 3)	ID_B1|SINE|B4	2740.0	NM_025673	66629.0	Mm.157655	NM_025673	ENSMUSG00000022200	Golph3	4733401N08Rik|5730410D03Rik|AW413496	golgi phosphoprotein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24005995-2	chr17	24005950	24006150	+	692.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-7950.0	NM_133731	70835.0	Mm.157351	NM_133731	ENSMUSG00000045027	Prss22	4733401N09Rik|BSSP-4|SP001LA	protease, serine 22	protein-coding	-0.763542714529713	-1.01308783148182	-1.02481234245107	-1.02867192971891	-1.03162070540972	-0.516860564214308	-1.0221581701616	-1.02830698487637	0.988232514862258	0.757549606858514	1
Merged-chr1-171594319-2	chr1	171594219	171594419	+	603.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001277968, intron 6 of 8)	intron (NM_001277968, intron 6 of 8)	13015.0	NR_102726	17085.0	Mm.560	NM_008534	ENSMUSG00000004707	Ly9	AI893573|CD229|Lgp100|Ly-9|SLAMF3|T100	lymphocyte antigen 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3064149-1	chr4	3064049	3064249	+	680.0	f1_balb.idr	Intergenic	Intergenic	-107934.0	NM_001167534	100312470.0	Mm.480297	NM_001167534	ENSMUSG00000115072	Vmn1r2	Gm11776	vomeronasal 1 receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-73532426-2	chr7	73532326	73532526	+	980.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081345, intron 2 of 38)	B1_Mus2|SINE|Alu	9320.0	NM_001081345	244059.0	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-86956608-4	chr11	86956505	86956705	+	868.2708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005341, intron 2 of 4)	intron (NM_001005341, intron 2 of 4)	37157.0	NM_001005341	77864.0	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-53219690-4	chr13	53219605	53219805	+	995.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013846, intron 1 of 8)	intron (NM_013846, intron 1 of 8)	66404.0	NM_013846	26564.0	Mm.342774	NM_013846	ENSMUSG00000021464	Ror2	Ntrkr2	receptor tyrosine kinase-like orphan receptor 2	protein-coding	4.14727890853678	2.97567586635361	2.20613974528701	3.52261371502228	3.99175741636313	2.69928643765834	3.01758321725575	3.4688905487247	-0.0276275960681861	0.967178028034344	0.998431161219273
Merged-chr5-90709019-2	chr5	90708919	90709119	+	803.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50279.0	NM_009141	20311.0	Mm.4660	NM_009141	ENSMUSG00000029371	Cxcl5	AMCF-II|Cxcl6|ENA-78|GCP-2|LIX|Scyb5|Scyb6	chemokine (C-X-C motif) ligand 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-130455238-4	chr5	130455047	130455247	+	890.8645630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021371, intron 1 of 5)	B4|SINE|B4	6355.0	NM_021371	140904.0	Mm.40875	NM_021371	ENSMUSG00000060371	Caln1	9630012C17Rik|Cabp8|MNCb-0849	calneuron 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118607368-7	chr9	118607368	118607568	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 1 of 27)	intron (NM_133721, intron 1 of 27)	759.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-92973075-4	chr1	92972954	92973154	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001104529)	promoter-TSS (NM_001104529)	-65.0	NM_001104529	64095.0	Mm.152780	NM_022320	ENSMUSG00000026271	Gpr35	KPG_007	G protein-coupled receptor 35	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-35066748-4	chr12	35066641	35066841	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001014973, intron 1 of 25)	Lx8|LINE|L1	19552.0	NM_001014973	217463.0	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	4.5269045398723	4.93185071145111	2.78222457595895	3.43041923890815	4.02189587612029	4.42389061467106	3.90289460610606	4.1618876478327	-0.0474151548383464	0.928995004306738	0.998431161219273
Merged-chr3-52069435-2	chr3	52069335	52069535	+	668.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	35571.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-8666050-2	chr11	8665961	8666161	+	590.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1526.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	-0.830082952707427	-0.819851362854155	-0.250080899652951	-0.826079801907499	-0.829487887514939	-0.81703034398656	-0.486546672514723	-0.82565814769946	-0.934671074905126	0.758281347450546	1
Merged-chr7-31038011-2	chr7	31037911	31038111	+	685.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001287217, intron 4 of 8)	intron (NM_001287217, intron 4 of 8)	2306.0	NR_106017	102465635.0		NR_106017	ENSMUSG00000098783	Mir7050	Gm27578|mmu-mir-7050	microRNA 7050	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-61735512-2	chr11	61735412	61735612	+	800.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144806, intron 9 of 11)	intron (NM_144806, intron 9 of 11)	-14713.0	NM_001033227	109342.0	Mm.441070	NM_001033227	ENSMUSG00000042371	Slc5a10	C330021F16Rik|SGLT5	solute carrier family 5 (sodium/glucose cotransporter), member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-22003731-2	chr10	22003631	22003831	+	708.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9065.0	NM_011361	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-63366402-2	chr4	63366302	63366502	+	880.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001305432)	TTS (NM_001305432)	3953.0	NM_011016	18406.0	Mm.14173	NM_011016	ENSMUSG00000061540	Orm2	Agp1|Orm-2	orosomucoid 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-137895337-1	chr3	137895237	137895437	+	552.0	f1_c57bl6.idr	intron (NM_001033155, intron 3 of 7)	B3|SINE|B2	-23218.0	NM_019920	56692.0	Mm.331392	NM_019920	ENSMUSG00000091512	Lamtor3	AW556229|Map2k1ip1|Mapbp|Mapksp1|Mp1	late endosomal/lysosomal adaptor, MAPK and MTOR activator 3	protein-coding	2.24758722849352	2.65010220481723	2.86596402408403	2.59678409759568	3.08116856440395	2.54129363062739	2.7946939213575	1.45749836765613	0.00584078936124974	0.994370819453186	0.998431161219273
Merged-chr3-105816271-4	chr3	105816172	105816372	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045845, intron 2 of 2)	intron (NR_045845, intron 2 of 2)	705.0	NR_045845	433637.0	Mm.331285	NR_045845	ENSMUSG00000104835	Gm5547	EG433637	predicted gene 5547	ncRNA	5.26282817738549	5.20671669923911	5.26176825595821	5.8840471153709	5.52556036244077	4.84091516559163	5.00668720617234	5.30894245978379	-0.26655193368874	0.388281961622195	0.87798849897156
Merged-chr7-136973170-2	chr7	136973070	136973270	+	614.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008598, intron 2 of 4)	intron (NM_008598, intron 2 of 4)	78559.0	NM_008598	17314.0	Mm.440219	NM_008598	ENSMUSG00000054612	Mgmt	AGT|AI267024|Agat	O-6-methylguanine-DNA methyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-13517061-3	chr13	13516935	13517135	+	879.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73374.0	NM_010748	17101.0	Mm.342337	NM_010748	ENSMUSG00000019726	Lyst	D13Sfk13|beige|bg	lysosomal trafficking regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-192089995-4	chr1	192089983	192090183	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011633, intron 1 of 9)	intron (NM_011633, intron 1 of 9)	2516.0	NM_011633	22033.0	Mm.380491	NM_011633		Traf5	-	TNF receptor-associated factor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-132112027-2	chr2	132111927	132112127	+	819.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355430, intron 1 of 15)	intron (NM_001355430, intron 1 of 15)	33081.0	NM_001355431	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-137776635-2	chr5	137776535	137776735	+	604.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2269.0	NM_001356989	69871.0	Mm.276058	NM_027242	ENSMUSG00000029725	Ppp1r35	2010007H12Rik|2010011D20Rik|AL024004	protein phosphatase 1, regulatory subunit 35	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-51454142-4	chr10	51454044	51454244	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26468.0	NM_008147	14727.0	Mm.439661	NM_008147	ENSMUSG00000112023	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-10870685-2	chr16	10870585	10870785	+	778.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35626.0	NM_001162932	223970.0	Mm.325777	NM_001033278	ENSMUSG00000037991	Rmi2	A630055G03Rik|Gm537|Gm929	RecQ mediated genome instability 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95160363-4	chr3	95160247	95160447	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001272024)	promoter-TSS (NM_001272024)	-73.0	NR_073550	20360.0	Mm.23662	NM_011351	ENSMUSG00000038777	Sema6c	Semay|mKIAA1869	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C	protein-coding	4.02221313451717	4.48746908106644	4.64175724654708	4.11586164256645	4.77892093957522	4.27202398140046	4.43244638407475	4.40627776776613	0.204810436324639	0.601950438060512	0.973429960802861
Merged-chr7-46849433-2	chr7	46849333	46849533	+	649.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001136069, intron 3 of 7)	intron (NM_001136069, intron 3 of 7)	2351.0	NM_001136069	16828.0	Mm.29324	NM_010699	ENSMUSG00000063229	Ldha	Ldh1|Ldhm|l7R2	lactate dehydrogenase A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-58716800-2	chr1	58716700	58716900	+	566.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355056, intron 1 of 8)	intron (NM_001355056, intron 1 of 8)	3514.0	NM_001355056	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-109691857-4	chr8	109691751	109691951	+	885.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155034, intron 1 of 10)	RSINE1|SINE|B4	1443.0	NR_155034	71955.0	Mm.290036	NM_028018	ENSMUSG00000031729	Ist1	2400003C14Rik|AW536298|mKIAA0174	increased sodium tolerance 1 homolog (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27763580-4	chr2	27763482	27763682	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011305)	TTS (NM_011305)	52999.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-54426879-4	chr14	54426777	54426977	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026851)	promoter-TSS (NM_026851)	-32.0	NM_026851	68836.0	Mm.248163	NM_026851	ENSMUSG00000010406	Mrpl52	1110047B07Rik	mitochondrial ribosomal protein L52	protein-coding	3.54836813736646	2.8782713436414	4.33652285649825	4.36473879569659	4.00079313212749	3.34086193487158	4.86317691617478	4.19237954948395	0.397531392454628	0.455061583342687	0.919253057979521
Merged-chr1-89069655-4	chr1	89069575	89069775	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133816)	promoter-TSS (NM_133816)	-740.0	NM_133816	98402.0	Mm.170983	NM_133816	ENSMUSG00000036206	Sh3bp4	AI594717|AW227605|BOG25	SH3-domain binding protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-119050422-1	chr2	119050322	119050522	+	619.0	f0_balb.idr	intron (NM_029617, intron 1 of 23)	intron (NM_029617, intron 1 of 23)	3303.0	NM_029617	76464.0	Mm.202518	NM_029617	ENSMUSG00000027326	Knl1	2310043D08Rik|5730505K17Rik|Casc5	kinetochore scaffold 1	protein-coding	1.476286281832	0.902362305931874	1.11937730619603	2.20989094018011	0.844035478764489	1.37222703712869	1.32387941330893	2.15167943741834	-0.0537089635785363	0.966986469168144	0.998431161219273
Merged-chr5-30958953-1	chr5	30958853	30959053	+	572.0	f1_c57bl6.idr	intron (NM_001294302, intron 2 of 7)	intron (NM_001294302, intron 2 of 7)	1374.0	NM_001294302	50907.0	Mm.272414	NM_016703	ENSMUSG00000045302	Preb	C85705	prolactin regulatory element binding	protein-coding	-0.385754007990828	0.0325804834547267	-0.374097962716133	0.663461792170852	-0.38466256238445	-0.367240374658641	-0.37285821536962	-0.377690880198966	-3.87730487004331	0.121024514514563	1
Merged-chr3-89295726-7	chr3	89295649	89295849	+	988.714294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14798.0	NM_001162425	13636.0	Mm.15675	NM_010107	ENSMUSG00000027954	Efna1	AI325262|B61|Efl1|Epl1|Eplg1|Lerk1	ephrin A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-111044333-2	chr9	111044233	111044433	+	949.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	12911.0	NM_001302377	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-10432351-2	chr16	10432251	10432451	+	845.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013778, intron 1 of 6)	intron (NM_001013778, intron 1 of 6)	15011.0	NM_001359069	383103.0	Mm.325732	NM_001013778	ENSMUSG00000050908	Tvp23a	Fam18a	trans-golgi network vesicle protein 23A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-76586368-2	chr11	76586268	76586468	+	793.016663	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D11|SINE|Alu	-8629.0	NM_198894	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	0.764156522810701	1.33638574470101	1.40992742565883	1.46966944346599	1.07073813497512	1.47861181130776	0.990767936024525	0.966408197511518	-0.559471713445187	0.674912044128422	0.99440487726309
Merged-chr4-63410783-4	chr4	63410690	63410890	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-7345.0	NM_001045514	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-94281914-2	chr11	94281814	94282014	+	543.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39335.0	NM_181819	278507.0	Mm.342216	NM_181819	ENSMUSG00000044177	Wfikkn2	2610304F08Rik|AY100450|Gasp1|WFIKKNRP	WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3923045-4	chr19	3922952	3923152	+	972.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026316, intron 2 of 9)	intron (NM_026316, intron 2 of 9)	6664.0	NM_026316	67689.0	Mm.109341	NM_026316	ENSMUSG00000024885	Aldh3b1	1700001N19Rik|ALDH4|ALDH7	aldehyde dehydrogenase 3 family, member B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98807343-2	chr11	98807243	98807443	+	651.833374	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001361931, exon 8 of 8)	3' UTR (NM_001361931, exon 8 of 8)	-2465.0	NM_138660	192160.0	Mm.40120	NM_138660	ENSMUSG00000078676	Casc3	Btz|Mln51	cancer susceptibility candidate 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-134372540-4	chr4	134372400	134372600	+	808.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019578)	promoter-TSS (NM_019578)	47.0	NM_001355493	56219.0	Mm.30978	NM_019578	ENSMUSG00000028838	Extl1	D430033M16Rik	exostoses (multiple)-like 1	protein-coding	3.85210100140808	2.38880134599499	3.58038609228308	1.80108205237259	2.8735543566771	2.40812030505192	3.02305556186598	3.93165628244599	0.0304753164829077	0.968161557981529	0.998431161219273
Merged-chr12-69696930-2	chr12	69696830	69697030	+	885.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_145443, intron 9 of 9)	MER20|DNA|hAT-Charlie	-15078.0	NM_001135559	20663.0	Mm.3770	NM_001135559	ENSMUSG00000034801	Sos2	SOS-2|mSOS-2	SOS Ras/Rho guanine nucleotide exchange factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-38338431-4	chr18	38338313	38338513	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011937, intron 1 of 6)	intron (NM_011937, intron 1 of 6)	580.0	NM_011937	26384.0	Mm.22374	NM_011937	ENSMUSG00000052102	Gnpda1	GNPDA|Gnp1|Gnpi|oscillin	glucosamine-6-phosphate deaminase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-31279614-2	chr9	31279514	31279714	+	653.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8213.0	NM_001101597	638580.0	Mm.373655	NM_001101597		Gm7244	EG638580	predicted gene 7244	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-6047055-2	chr6	6046955	6047155	+	645.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177572, intron 15 of 17)	intron (NM_001177572, intron 15 of 17)	-69662.0	NR_040255	72249.0	Mm.443268	NR_040255	ENSMUSG00000085416	1700019G24Rik	-	RIKEN cDNA 1700019G24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-43817475-2	chr1	43817375	43817575	+	599.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026430, intron 1 of 14)	L1MB2|LINE|L1	10233.0	NM_026430	67883.0	Mm.387202	NM_026430	ENSMUSG00000057363	Uxs1	1600025I13Rik|AI451869|AI649125|AW550562	UDP-glucuronate decarboxylase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-54752688-2	chr14	54752588	54752788	+	694.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016972, intron 3 of 10)	(CA)n|Simple_repeat|Simple_repeat	29198.0	NM_016972	50934.0	Mm.276831	NM_016972	ENSMUSG00000022180	Slc7a8	AA408822|LAT2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	protein-coding	0.309257720724608	-0.0805990809806722	0.304424813972249	0.36558812967665	-0.090476833903178	-0.0798062131750255	-0.0833239939860675	-0.0862911953143034	-3.77217580192382	0.100618245554992	1
Merged-chr19-47462888-2	chr19	47462828	47463028	+	626.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008018, intron 1 of 14)	intron (NM_008018, intron 1 of 14)	1483.0	NM_001164717	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	-0.551272587244006	-0.540167878056993	-0.543813066729795	-0.383585906194126	-0.550581326333614	0.0791875365687982	-0.543009679388438	-0.240968739575426	2.50093808404157	0.337734739272071	1
Merged-chr6-113751323-4	chr6	113751226	113751426	+	897.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001036684, intron 19 of 19)	A-rich|Low_complexity|Low_complexity	-10645.0	NM_024206	110379.0	Mm.29296	NM_024206	ENSMUSG00000030298	Sec13	1110003H02Rik|Sec13l1|Sec13r	SEC13 homolog, nuclear pore and COPII coat complex component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-66058684-2	chr9	66058584	66058784	+	863.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1485.0	NM_011149	19035.0	Mm.335249	NM_011149	ENSMUSG00000032383	Ppib	AA408962|AA553318|AI844835|Cphn-2|Cphn2|CyP-20b	peptidylprolyl isomerase B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-41352459-2	chr12	41352359	41352559	+	554.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_053122, intron 4 of 6)	intron (NM_053122, intron 4 of 6)	133598.0	NM_001271708	16981.0	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-44729613-4	chr10	44729518	44729718	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-270870.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-65177163-4	chr1	65177061	65177261	+	954.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111320, intron 1 of 8)	intron (NM_001111320, intron 1 of 8)	1981.0	NM_010497	15926.0	Mm.9925	NM_010497	ENSMUSG00000025950	Idh1	AI314845|AI788952|E030024J03Rik|Id-1|Idh-1|Idpc	isocitrate dehydrogenase 1 (NADP+), soluble	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76324683-2	chr15	76324583	76324783	+	831.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2714.0	NM_175399	109075.0	Mm.322752	NM_175399	ENSMUSG00000034259	Exosc4	1110039I09Rik|1500001N04Rik|Rrp41	exosome component 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-26559522-2	chr6	26559422	26559622	+	700.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	628096.0	NR_040771	626904.0	Mm.126787	NR_040771	ENSMUSG00000106799	Gm20756	-	predicted gene, 20756	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-71003852-2	chr1	71003752	71003952	+	899.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB2|LINE|L1	99120.0	NM_007525	12021.0	Mm.10764	NM_007525	ENSMUSG00000026196	Bard1	-	BRCA1 associated RING domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-36282596-2	chr15	36282496	36282696	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357631, intron 1 of 7)	CpG	551.0	NM_013923	30945.0	Mm.5181	NM_013923	ENSMUSG00000022280	Rnf19a	AA032313|Dorfin|Rnf19|UIP117|Ubce7ip2|XYbp	ring finger protein 19A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-116460581-4	chr12	116460483	116460683	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_133762, exon 29 of 29)	exon (NM_133762, exon 29 of 29)	-25137.0	NM_011215	19276.0	Mm.206054	NM_011215	ENSMUSG00000056553	Ptprn2	4930425H11Rik|IA2beta|PTP-NP|Phol|mKIAA0387|phogrin	protein tyrosine phosphatase, receptor type, N polypeptide 2	protein-coding	6.39283331117092	6.39290339328458	6.6860189471183	5.9573506142898	6.32233660032311	6.33770085577367	5.78104541451833	4.71086314180793	-0.498895299163735	0.101163960169767	0.494828988708111
Merged-chr10-62219032-3	chr10	62218940	62219140	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197996, intron 1 of 7)	intron (NM_197996, intron 1 of 7)	12178.0	NM_197996	70423.0	Mm.416781	NM_197996	ENSMUSG00000037031	Tspan15	1110036D12Rik|2700063A19Rik|AW048364|Tm4sf15	tetraspanin 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-56256966-4	chr19	56256855	56257055	+	920.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30957.0	NM_001329936	226243.0	Mm.25791	NM_146101	ENSMUSG00000025075	Habp2	AI035669|FSAP|HABP|HGFAL|PHBP	hyaluronic acid binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-50827539-4	chr15	50827445	50827645	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310481, intron 3 of 5)	intron (NM_001310481, intron 3 of 5)	61504.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	3.88596319345497	3.68966778785319	2.81701497292537	2.98731372155834	4.47552113840848	4.00911525378299	3.10508445940248	3.11568498103814	0.578951418820729	0.330731292134995	0.83197671091297
Merged-chr2-174672690-4	chr2	174672629	174672829	+	865.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001099328, intron 3 of 4)	intron (NM_001099328, intron 3 of 4)	29195.0	NM_001099328	100043757.0	Mm.48711	NM_001099328	ENSMUSG00000050600	Zfp831	-	zinc finger protein 831	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-119923506-2	chr9	119923406	119923606	+	815.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_026236, intron 17 of 18)	intron (NM_026236, intron 17 of 18)	14052.0	NM_028976	74498.0	Mm.104789	NM_028976	ENSMUSG00000032513	Gorasp1	5430411C10Rik|GOLPH5|GRASP65|P65	golgi reassembly stacking protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-38871191-4	chr6	38871006	38871206	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010433, intron 1 of 14)	intron (NM_010433, intron 1 of 14)	5084.0	NM_010433	15258.0	Mm.23790	NM_010433	ENSMUSG00000061436	Hipk2	1110014O20Rik|B230339E18Rik|Stank	homeodomain interacting protein kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-17759619-4	chr16	17759522	17759722	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145479)	promoter-TSS (NM_145479)	1.0	NM_001359068	224023.0	Mm.282807	NM_145479	ENSMUSG00000022750	Klhl22	2610318I18Rik|Kelchl	kelch-like 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-35768954-3	chr16	35768862	35769062	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_153550, exon 1 of 9)	exon (NM_153550, exon 1 of 9)	394.0	NM_153550	224132.0	Mm.24094	NM_153550	ENSMUSG00000022848	Dirc2	RCC4	disrupted in renal carcinoma 2 (human)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-122118419-4	chr2	122118322	122118522	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145531)	promoter-TSS (NM_145531)	-36.0	NM_145531	214585.0	Mm.222303	NM_145531	ENSMUSG00000033396	Spg11	6030465E24Rik|A330015I11|C530005A01Rik	SPG11, spatacsin vesicle trafficking associated	protein-coding	5.75664121500591	5.60498469879288	5.73969112529726	5.76501213496824	6.07095732488335	5.54617145258932	5.67588850283434	5.89280462303538	0.111079574114904	0.65330220982504	0.986651124875732
Merged-chr9-121299451-4	chr9	121299449	121299649	+	777.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152160, intron 1 of 17)	intron (NR_152160, intron 1 of 17)	2047.0	NR_152160	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	2.80171320719178	2.45556296802018	3.03360360443748	2.30659574797175	2.90109203982835	3.39313148314236	2.23151212014035	2.31844835559973	0.228802656968067	0.759255286194932	0.998431161219273
Merged-chr5-36550329-3	chr5	36550161	36550361	+	795.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133910, intron 2 of 13)	intron (NM_133910, intron 2 of 13)	-19638.0	NM_001113364	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	1.87376323813296	2.48457149188701	2.7458508020342	1.2186111726494	2.31299708413654	2.26656235283812	2.30833041044056	1.22311427795124	-0.258523359493528	0.804489185466441	0.998431161219273
Merged-chr16-50477803-2	chr16	50477703	50477903	+	770.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45337.0	NM_001347240	70508.0	Mm.28940	NM_027444	ENSMUSG00000022641	Bbx	5530401J07Rik|5730403O13Rik	bobby sox HMG box containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-123018595-1	chr8	123018495	123018695	+	551.0	f0_balb.idr	intron (NM_001081379, intron 1 of 12)	MLT1E1A|LTR|ERVL-MaLR	23689.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-48787956-4	chr11	48787852	48788052	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-12408.0	NM_008143	14694.0	Mm.5305	NM_008143	ENSMUSG00000020372	Rack1	AL033335|GB-like|Gnb2-rs1|Gnb2l1|p205	receptor for activated C kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80296875-2	chr10	80296775	80296975	+	841.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 1 of 4)	intron (NR_038088, intron 1 of 4)	4366.0	NM_001310726	20054.0	Mm.643	NM_009091	ENSMUSG00000063457	Rps15	rig	ribosomal protein S15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117263566-2	chr8	117263466	117263666	+	887.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	6547.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111676919-4	chr12	111676810	111677010	+	936.025024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1195.0	NM_001099792	328162.0	Mm.425747	NM_177374	ENSMUSG00000060950	Trmt61a	6720458F09Rik|AI606093|Gcd14|Trm61	tRNA methyltransferase 61A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-68475407-4	chr11	68475285	68475485	+	973.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177320, intron 2 of 18)	intron (NM_177320, intron 2 of 18)	-27634.0	NM_001004435	104709.0	Mm.234573	NM_001004435	ENSMUSG00000046207	Pik3r6	BB220380|p84|p84 PIKAP|p87(PIKAP)|p87PIKAP	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-92787165-4	chr16	92787032	92787232	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111022, intron 2 of 6)	intron (NM_001111022, intron 2 of 6)	38942.0	NM_001111021	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-37654414-4	chr3	37654526	37654726	+	790.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14679.0	NM_011896	24063.0	Mm.330986	NM_011896	ENSMUSG00000037211	Spry1	sprouty1|spry-1	sprouty RTK signaling antagonist 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118707761-3	chr9	118707761	118707961	+	718.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 15 of 27)	intron (NM_133721, intron 15 of 27)	-3831.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	1.92714476279459	2.4687478378042	1.11718699517348	1.09801098262725	1.84072188215511	1.61442612178542	2.00289453239266	2.14733092072286	0.298881549875586	0.792000285498781	0.998431161219273
Merged-chr3-148810730-3	chr3	148810635	148810835	+	963.694458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TC)n|Simple_repeat|Simple_repeat	143900.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-146479398-3	chr6	146479245	146479445	+	912.4682619999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019923, intron 1 of 56)	intron (NM_019923, intron 1 of 56)	22878.0	NM_010586	16439.0	Mm.7800	NM_010586	ENSMUSG00000030287	Itpr2	AI649341|InsP3R-2|InsP3R-5|Ip3r2|Itpr5|insP3R2	inositol 1,4,5-triphosphate receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-45074746-11	chr19	45074666	45074866	+	987.636353	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001362398)	promoter-TSS (NM_001362398)	-475.0	NM_001362398	107250.0	Mm.24417	NM_178929	ENSMUSG00000025213	Kazald1	AI842353|Bono1|IGFBP-rP10	Kazal-type serine peptidase inhibitor domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-80078160-2	chr11	80078060	80078260	+	828.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_018776, intron 1 of 7)	intron (NM_018776, intron 1 of 7)	2831.0	NM_001277106	54394.0	Mm.272093	NM_018776	ENSMUSG00000017561	Crlf3	BB164954|Creme9|Cytor4	cytokine receptor-like factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-7535322-4	chr3	7535204	7535404	+	780.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173181, intron 7 of 8)	intron (NM_173181, intron 7 of 8)	31878.0	NM_173181	67306.0	Mm.332366	NM_173181	ENSMUSG00000043542	Zc2hc1a	3110050N22Rik|AI790358|AU023959|Fam164a	zinc finger, C2HC-type containing 1A	protein-coding	2.36909890255983	3.46825368273572	2.26627788348279	2.19973373724936	2.72259369103886	3.56358564652862	3.2285009147825	2.86327469771196	0.789143238766663	0.272427611586129	0.775631299106725
Merged-chr18-60697442-2	chr18	60697342	60697542	+	702.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001348100, intron 9 of 14)	intron (NM_001348100, intron 9 of 14)	30124.0	NM_001348103	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129637667-1	chr4	129637567	129637767	+	564.0	f1_balb.idr	intron (NM_001005506, intron 2 of 9)	B1_Mus1|SINE|Alu	3138.0	NM_001005506	109658.0	Mm.268863	NM_001005506	ENSMUSG00000053841	Txlna	2600010N21Rik|AI425952|AW209241|Il14|Txln	taxilin alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-69180063-2	chr17	69179963	69180163	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355736, intron 1 of 21)	intron (NM_001355736, intron 1 of 21)	20707.0	NM_001355735	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-62183850-4	chr18	62183742	62183942	+	758.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013754, intron 1 of 1)	intron (NM_001013754, intron 1 of 1)	3742.0	NM_001013754	225609.0	Mm.296917	NM_001013754	ENSMUSG00000054589	Gm9949	EG225609	predicted gene 9949	protein-coding	2.50491574526843	2.46408205541308	2.7216232757345	1.65549830686858	1.99961416212314	1.55157394287084	1.25319063270342	2.10337659365764	-1.54478828704557	0.114955720554387	0.531605896377922
Merged-chr9-98333384-4	chr9	98333275	98333475	+	997.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357445, intron 1 of 3)	MTD|LTR|ERVL-MaLR	36805.0	NM_001357451	74080.0	Mm.294082	NM_144533	ENSMUSG00000032456	Nmnat3	4933408N02Rik|PNAT3	nicotinamide nucleotide adenylyltransferase 3	protein-coding	4.58810883763911	3.96060752878918	4.77979858488216	3.71862213593152	3.82611436391148	4.39701138598628	4.47177377868916	3.38384452567386	-0.336070677167968	0.474323730578453	0.926577946129404
Merged-chr10-19506155-4	chr10	19506062	19506262	+	936.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_152784, exon 3 of 4)	non-coding (NR_152784, exon 3 of 4)	11519.0	NR_152785	102635880.0	Mm.331974	NR_152784	ENSMUSG00000110902	Gm33104	-	predicted gene, 33104	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80400468-2	chr10	80400368	80400568	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001306143)	promoter-TSS (NM_001306143)	-937.0	NM_001306143	17192.0	Mm.7142	NM_013595	ENSMUSG00000035478	Mbd3	AI181826|AU019209	methyl-CpG binding domain protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4160763-2	chr19	4160663	4160863	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153661, intron 5 of 14)	intron (NR_153661, intron 5 of 14)	2620.0	NR_153661	58988.0	Mm.271937	NM_021485	ENSMUSG00000024830	Rps6kb2	S6K-beta-2|S6K2	ribosomal protein S6 kinase, polypeptide 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-139205722-4	chr3	139205644	139205844	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198659)	promoter-TSS (NM_198659)	-149.0	NM_198659	381476.0	Mm.188334	NM_198659	ENSMUSG00000047940	Stpg2	B930007M17Rik|Gm1017	sperm tail PG rich repeat containing 2	protein-coding	3.67348064670116	3.59402853460619	4.54718224691455	3.06846386309625	2.54409999056212	4.14093994743779	4.5400544063624	1.62470276742851	-0.213599558296503	0.849385678224342	0.998431161219273
Merged-chr13-33047651-4	chr13	33047539	33047739	+	912.345825	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	20225.0	NM_011452	20706.0	Mm.45371	NM_011452	ENSMUSG00000021403	Serpinb9b	1600019A21Rik|R86|SPI-CI|Spi10|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 9b	protein-coding	3.52015237075506	3.9457095589156	4.56073439339992	4.23077872656032	3.91317779645266	3.89769150415934	3.77044333368343	2.67396419011478	-0.654072718450389	0.205756574620161	0.693427149363077
Merged-chr2-93597956-4	chr2	93597874	93598074	+	934.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44460.0	NM_007442	11695.0	Mm.389389	NM_007442	ENSMUSG00000040310	Alx4	lst	aristaless-like homeobox 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-14706642-4	chr14	14706446	14706646	+	926.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360513, intron 1 of 25)	intron (NM_001360513, intron 1 of 25)	3521.0	NM_001360509	218756.0	Mm.258893	NM_001033270	ENSMUSG00000021733	Slc4a7	E430014N10Rik|NBC3|NBCn1|NBCn1-G|Tg(Thy1-SNCA)12Mjff	solute carrier family 4, sodium bicarbonate cotransporter, member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-59123636-2	chr3	59123536	59123736	+	616.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001287119, intron 1 of 2)	intron (NM_001287119, intron 1 of 2)	7126.0	NM_001287124	140795.0	Mm.439021	NM_133200	ENSMUSG00000036381	P2ry14	A330108O13Rik|Gpr105|P2Y14	purinergic receptor P2Y, G-protein coupled, 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-51518088-4	chr10	51517993	51518193	+	898.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	27195.0	NM_013532	14728.0	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-134801470-2	chr4	134801370	134801570	+	803.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33466.0	NM_145554	100017.0	Mm.27486	NM_145554	ENSMUSG00000037295	Ldlrap1	AA691260|ARH2|Arh|Arh1|FHCB1|FHCB2	low density lipoprotein receptor adaptor protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-72298758-2	chr2	72298658	72298858	+	907.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_023057, intron 2 of 19)	intron (NM_023057, intron 2 of 19)	13057.0	NM_178084	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-75674715-2	chr10	75674615	75674815	+	967.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172549, intron 29 of 36)	intron (NM_172549, intron 29 of 36)	-30707.0	NM_027890	71733.0	Mm.247956	NM_027890	ENSMUSG00000006342	Susd2	1200011D11Rik	sushi domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-17680441-4	chr12	17680327	17680527	+	886.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10382.0	NM_001361645	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-43055488-3	chr17	43055383	43055583	+	844.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178589, intron 3 of 5)	B1_Mus2|SINE|Alu	38928.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	-1.84303373260285	-1.81303463126392	-1.82210660711932	-1.82955859819738	-1.84092785115721	-1.81106869625141	-1.8200529106377	-1.54273750312762	1.50114612804783	0.670102668014672	1
Merged-chr7-25786603-2	chr7	25786503	25786703	+	602.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009465, intron 3 of 19)	C-rich|Low_complexity|Low_complexity	2130.0	NM_001190974	26362.0	Mm.4128	NM_009465	ENSMUSG00000002602	Axl	AI323647|Ark|Tyro7|Ufo	AXL receptor tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134981851-2	chr6	134981752	134981952	+	723.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001109914)	promoter-TSS (NM_001109914)	-149.0	NM_001109914	381823.0	Mm.296104	NM_001109914	ENSMUSG00000090698	Apold1	Gm1075	apolipoprotein L domain containing 1	protein-coding	-2.18308165884198	-2.15547475440471	-2.16382331017202	-2.1706810624505	-2.18114370519566	-2.15366558754311	-2.03057248461154	-2.16945352807143	0.759018020146679	0.829933115115583	1
Merged-chr7-89419127-1	chr7	89419027	89419227	+	783.0	f0_balb.idr	Intergenic	Intergenic	-7179.0	NR_102276	101521.0	Mm.26902	NR_102276	ENSMUSG00000109311	AI314278	-	expressed sequence AI314278	ncRNA	-1.84436392554074	-1.52091821270385	-1.82290882857571	-1.83054882630441	-1.84220491470818	-1.81159244170985	-1.82080331928423	-1.82918127036376	-1.56828060379516	0.655578384384393	1
Merged-chr7-141217404-2	chr7	141217304	141217504	+	649.833313	f1_balb.idr|f1_c57bl6.idr	exon (NM_025886, exon 3 of 6)	exon (NM_025886, exon 3 of 6)	1544.0	NM_025886	66985.0	Mm.21202	NM_025886	ENSMUSG00000038618	Rassf7	2400009B11Rik|AW210608	Ras association (RalGDS/AF-6) domain family (N-terminal) member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70630901-4	chr8	70630813	70631013	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011819, intron 1 of 1)	intron (NM_011819, intron 1 of 1)	1182.0	NM_011819	23886.0	Mm.31325	NM_011819	ENSMUSG00000038508	Gdf15	MIC-1|NAG-1|SBF	growth differentiation factor 15	protein-coding	6.39264536434936	5.99347776329376	7.11438857256522	7.24602453521022	6.09722841975864	5.0228036284121	5.38382558991489	6.37998243842088	-1.02331602209292	0.00111721604650011	0.0212318238530754
Merged-chr4-102543157-4	chr4	102543037	102543237	+	917.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019840, intron 5 of 14)	intron (NM_019840, intron 5 of 14)	-26923.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-67450306-7	chr5	67450189	67450389	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-13609.0	NR_110363	320479.0	Mm.387187	NR_015582	ENSMUSG00000107385	C330024D21Rik	-	RIKEN cDNA C330024D21 gene	ncRNA	1.04009338743093	0.98752243087249	1.40348416131516	0.740251780522039	1.84489375500769	1.18034922763338	0.753528768367479	1.36547218095972	1.1575291178863	0.40647345634806	0.891349188972345
Merged-chr7-12903785-3	chr7	12903688	12903888	+	799.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001001447, exon 2 of 3)	exon (NM_001001447, exon 2 of 3)	5979.0	NM_001290441	232878.0	Mm.40706	NM_001001447	ENSMUSG00000054715	Zscan22	AW227621|D530006B18Rik|Hkr2	zinc finger and SCAN domain containing 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-54822140-3	chr13	54822044	54822244	+	826.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32739.0	NM_028841	74257.0	Mm.32883	NM_028841	ENSMUSG00000025875	Tspan17	2210021G21Rik|AI047581|Fbxo23|Tm4sf17	tetraspanin 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-140269133-3	chr1	140268989	140269189	+	747.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081027, intron 1 of 27)	intron (NM_001081027, intron 1 of 27)	22832.0	NM_001081027	240776.0	Mm.483845	NM_001081027	ENSMUSG00000052726	Kcnt2	E330038N15Rik|Slick	potassium channel, subfamily T, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-51734320-2	chr13	51734220	51734420	+	686.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_013660, intron 2 of 15)	intron (NM_013660, intron 2 of 15)	59427.0	NM_001281880	20354.0	Mm.33903	NM_013660	ENSMUSG00000021451	Sema4d	CD100|Semacl2|Semaj|Semcl2|coll-4	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5014344-2	chr17	5014244	5014444	+	612.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 1 of 19)	intron (NM_001085355, intron 1 of 19)	19270.0	NM_001085355	239985.0	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81377781-2	chr10	81377681	81377881	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019757, intron 1 of 13)	intron (NM_019757, intron 1 of 13)	589.0	NM_019757	56371.0	Mm.24202	NM_019757	ENSMUSG00000020235	Fzr1	AW108046|Cdh1|FZR|FZR2|Fyr|HCDH|HCDH1	fizzy and cell division cycle 20 related 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-74018443-4	chr17	74018338	74018538	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053188, intron 4 of 4)	Lx8|LINE|L1	29478.0	NM_053188	94224.0	Mm.38933	NM_053188	ENSMUSG00000038541	Srd5a2	5ART2|S5AR 2	steroid 5 alpha-reductase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-39134024-4	chr10	39133932	39134132	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028006)	promoter-TSS (NM_028006)	9.0	NM_028006	71924.0	Mm.297956	NM_028006	ENSMUSG00000019845	Tube1	2310061K05Rik|AI551343|Tube	epsilon-tubulin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-94167352-2	chr13	94167252	94167452	+	557.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172589, intron 2 of 3)	intron (NM_172589, intron 2 of 3)	109556.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-82869703-2	chr11	82869603	82869803	+	950.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164569, intron 1 of 7)	intron (NM_001164569, intron 1 of 7)	1041.0	NM_001164570	67338.0	Mm.341608	NM_026097	ENSMUSG00000020696	Rffl	1700051E09Rik|4930516L10Rik|BG080975|Carp2	ring finger and FYVE like domain containing protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-32754893-4	chr19	32754808	32755008	+	969.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2669.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95024671-2	chr3	95024571	95024771	+	999.3000490000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-9214.0	NM_001357863	78266.0	Mm.389478	NM_030074	ENSMUSG00000019338	Zfp687	4931408L03Rik|Znf687|mKIAA1441	zinc finger protein 687	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-119925447-4	chr9	119925329	119925529	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_028976)	TTS (NM_028976)	12129.0	NM_028976	74498.0	Mm.104789	NM_028976	ENSMUSG00000032513	Gorasp1	5430411C10Rik|GOLPH5|GRASP65|P65	golgi reassembly stacking protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-125558760-2	chr1	125558660	125558860	+	638.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur2|SINE|Alu	-1835.0	NM_001356294	74150.0	Mm.28654	NM_028787	ENSMUSG00000026342	Slc35f5	1300003P13Rik|AI646727	solute carrier family 35, member F5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-9467431-2	chr13	9467331	9467531	+	895.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081426, intron 1 of 36)	intron (NM_001081426, intron 1 of 36)	190906.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-128393077-4	chr7	128392976	128393176	+	956.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026418, intron 3 of 4)	intron (NM_026418, intron 3 of 4)	25096.0	NM_026418	67865.0	Mm.18635	NM_026418	ENSMUSG00000030844	Rgs10	2310010N19Rik	regulator of G-protein signalling 10	protein-coding	2.54373222666792	2.57666744598565	3.25061362080852	3.37617109565627	2.56522535151582	2.59578463744089	3.27523233393573	3.39268142462432	0.0362282314152492	0.957330347644955	0.998431161219273
Merged-chr9-57522390-6	chr9	57522329	57522529	+	900.0277710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007747, intron 1 of 4)	intron (NM_007747, intron 1 of 4)	1197.0	NM_007747	12858.0	Mm.273403	NM_007747	ENSMUSG00000000088	Cox5a	AA959768|CcOX	cytochrome c oxidase subunit Va	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-87984654-4	chr17	87984553	87984753	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010830, exon 4 of 10)	exon (NM_010830, exon 4 of 10)	9603.0	NM_010830	17688.0	Mm.18210	NM_010830	ENSMUSG00000005370	Msh6	AU044881|AW550279|GTBP|Gtmbp	mutS homolog 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-21837818-4	chr16	21837721	21837921	+	711.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43474.0	NR_037957	100043489.0	Mm.326535	NR_037957	ENSMUSG00000097290	1300002E11Rik	1500026P21Rik	RIKEN cDNA 1300002E11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-131258279-2	chr2	131258179	131258379	+	702.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-3729.0	NM_001355681	74450.0	Mm.101264	NM_153501	ENSMUSG00000037514	Pank2	4933409I19Rik|AI642621	pantothenate kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46547429-3	chr8	46547311	46547511	+	839.7333369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4658.0	NM_027973	71876.0	Mm.22108	NM_027973	ENSMUSG00000031629	Cenpu	1700029A22Rik|Mlf1ip	centromere protein U	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-18846301-4	chr8	18846209	18846409	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026792)	promoter-TSS (NM_026792)	30.0	NM_026792	52123.0	Mm.24117	NM_026792	ENSMUSG00000031467	Agpat5	1110013A05Rik|D8Ertd319e	1-acylglycerol-3-phosphate O-acyltransferase 5 (lysophosphatidic acid acyltransferase, epsilon)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-134234382-4	chr5	134234302	134234502	+	948.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4777.0	NR_104383	17969.0	Mm.425296	NM_010876	ENSMUSG00000015950	Ncf1	NCF-47K|NOXO2|Ncf-1|p47-phox|p47<phox>|p47phox	neutrophil cytosolic factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-64697457-3	chr1	64697359	64697559	+	669.0888669999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001097644, intron 1 of 9)	intron (NM_001097644, intron 1 of 9)	6114.0	NM_001097644	227210.0	Mm.39706	NM_001097644	ENSMUSG00000070871	Ccnyl1	9630037P07Rik|AW554339	cyclin Y-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-89404499-2	chr8	89404395	89404595	+	765.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-360333.0	NM_021390	58198.0	Mm.214361	NM_021390	ENSMUSG00000031665	Sall1	Msal-3	spalt like transcription factor 1	protein-coding	1.36551472296164	0.899480775629875	0.672984875042236	1.45784724997353	1.37958439510815	1.23822968754584	0.675500895085648	0.665680298867201	-0.45082081464974	0.769939297238221	0.998431161219273
Merged-chr15-97248474-3	chr15	97248369	97248569	+	870.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172293, intron 1 of 5)	intron (NM_172293, intron 1 of 5)	-1182.0	NM_001164602	105827.0	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90509425-4	chr2	90509327	90509527	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	-30253.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-8743702-2	chr3	8743602	8743802	+	900.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-76664.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-44702275-4	chr10	44702177	44702377	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-243529.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-176075661-3	chr1	176075548	176075748	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357846, intron 2 of 8)	intron (NM_001357846, intron 2 of 8)	138294.0	NM_001357845	319455.0	Mm.338001	NM_176916	ENSMUSG00000055214	Pld5	B230365F16Rik	phospholipase D family, member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-58330681-4	chr11	58330571	58330771	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161338)	promoter-TSS (NM_001161338)	-36.0	NM_001161338	79566.0	Mm.290534	NM_024480	ENSMUSG00000013646	Sh3bp5l	2310074E09Rik|BC003251|mKIAA1720	SH3 binding domain protein 5 like	protein-coding	6.932507483546	6.23037403661693	6.67192705329915	6.70628760048584	7.20933827396894	6.20347259974889	7.05393384614697	6.85575632923548	0.236192580895336	0.298679269066656	0.800257675359925
Merged-chr17-50988154-2	chr17	50988054	50988254	+	676.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028162, intron 3 of 21)	intron (NM_028162, intron 3 of 21)	171224.0	NM_001285993	72238.0	Mm.120650	NM_028162	ENSMUSG00000023923	Tbc1d5	1600014N05Rik	TBC1 domain family, member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70214852-2	chr8	70214752	70214952	+	872.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-2571.0	NM_001007570	73095.0	Mm.185413	NM_001007570	ENSMUSG00000002346	Slc25a42	2900084M01Rik	solute carrier family 25, member 42	protein-coding	-2.05752322593321	-2.15521190974092	-2.16307242109104	-2.16952927915413	-2.17938029103484	-2.15350850414045	-2.16129297361887	-2.16837350464794	-0.683654500252594	0.846597994014493	1
Merged-chr3-57706267-3	chr3	57706164	57706364	+	709.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	-13727.0	NM_001033349	242037.0	Mm.291091	NM_001033349	ENSMUSG00000074591	Ankub1	Gm410	ankrin repeat and ubiquitin domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36726700-4	chr18	36726597	36726797	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_009841, exon 1 of 2)	5' UTR (NM_009841, exon 1 of 2)	118.0	NM_009841	12475.0	Mm.3460	NM_009841	ENSMUSG00000051439	Cd14	-	CD14 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-110186316-2	chr7	110186216	110186416	+	555.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-35387.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-104094990-3	chr13	104094885	104095085	+	798.805542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029447, intron 1 of 12)	ORR1E|LTR|ERVL-MaLR	14629.0	NM_029447	75805.0	Mm.127692	NM_029447	ENSMUSG00000021710	Nln	4930472G13Rik|C79345	neurolysin (metallopeptidase M3 family)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80018821-6	chr7	80018763	80018963	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-5951.0	NM_001145999	209225.0	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	3.39424927674448	2.94394427661912	2.62769165795889	2.66373824225308	2.19171267711144	3.06376475605301	2.64848781117928	1.75337019502388	-0.863228906728639	0.25809830095745	0.75799528758669
Merged-chr4-86576465-3	chr4	86576295	86576495	+	810.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_178376, exon 1 of 1)	exon (NM_178376, exon 1 of 1)	722.0	NM_178376	68441.0	Mm.31178	NM_178376	ENSMUSG00000070934	Rraga	1300010C19Rik|AI255374|FIP-1|RAGA	Ras-related GTP binding A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-80960712-4	chr13	80960601	80960801	+	967.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3373.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80137396-2	chr10	80137296	80137496	+	829.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001195268)	promoter-TSS (NM_001195268)	-9.0	NM_001195268	100503659.0	Mm.485395	NM_015761	ENSMUSG00000035640	Cbarp	9630008F14|Dos|R29144/1	calcium channel, voltage-dependent, beta subunit associated regulatory protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64485134-2	chr5	64485034	64485234	+	610.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F|LTR|ERVL-MaLR	8126.0	NR_045413	77382.0	Mm.366742	NR_045411	ENSMUSG00000105352	C030018K13Rik	-	RIKEN cDNA C030018K13 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-79491842-4	chr3	79491747	79491947	+	956.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162999, intron 10 of 16)	intron (NM_001162999, intron 10 of 16)	75832.0	NM_001162999	329679.0	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-95958942-2	chr13	95958839	95959039	+	640.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_029210)	TTS (NM_029210)	-67017.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	0.956103754152116	1.02385153911498	2.16643426968672	1.54821240539476	1.71957014654085	1.94901596724454	2.18525165616946	1.21343208679005	0.817511158373456	0.501721743323341	0.938443375140454
Merged-chr5-118464625-2	chr5	118464525	118464725	+	903.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-96094.0	NM_001347445	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-83656852-2	chr13	83656752	83656952	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347579, intron 10 of 10)	intron (NM_001347579, intron 10 of 10)	-64529.0	NR_152244	320203.0	Mm.245636	NM_177100	ENSMUSG00000050334	C130071C03Rik	2810449C10Rik|ECONEXIN|EyeLinc1|Visc-1	RIKEN cDNA C130071C03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45467545-1	chr7	45467445	45467645	+	568.5	f1_c57bl6.idr	promoter-TSS (NM_007527)	promoter-TSS (NM_007527)	-647.0	NM_007527	12028.0	Mm.19904	NM_007527	ENSMUSG00000003873	Bax	-	BCL2-associated X protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-54578552-3	chr9	54578448	54578648	+	843.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR25B|LTR|ERVK	-7963.0	NM_029573	67834.0	Mm.279195	NM_029573	ENSMUSG00000032279	Idh3a	1110003P10Rik|1500012E04Rik|AA407078|AI316514	isocitrate dehydrogenase 3 (NAD+) alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-50659598-4	chr9	50659491	50659691	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_145614, exon 1 of 14)	5' UTR (NM_145614, exon 1 of 14)	189.0	NM_145614	235339.0	Mm.285076	NM_145614	ENSMUSG00000000168	Dlat	6332404G05Rik|DLTA|PDC-E2	dihydrolipoamide S-acetyltransferase (E2 component of pyruvate dehydrogenase complex)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98838420-2	chr11	98838320	98838520	+	592.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080925, intron 1 of 14)	intron (NM_001080925, intron 1 of 14)	1635.0	NM_001080925	268480.0	Mm.340766	NM_001080925	ENSMUSG00000038020	Rapgefl1	B230105J10	Rap guanine nucleotide exchange factor (GEF)-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150927491-2	chr4	150927391	150927591	+	868.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001077509)	promoter-TSS (NM_001077509)	-508.0	NM_001077509	21942.0	Mm.244187	NM_011612	ENSMUSG00000028965	Tnfrsf9	4-1BB|A930040I11Rik|AA408498|AI325004|CDw137|Cd137|ILA|Ly63	tumor necrosis factor receptor superfamily, member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-41363598-3	chr3	41363570	41363770	+	755.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	129529.0	NR_040385	78706.0	Mm.366094	NR_040385	ENSMUSG00000097639	Platr4	C430002E04Rik	pluripotency associated transcript 4	ncRNA	0.266845646326967	0.911547585719128	0.121658420176153	0.115875254584969	0.271690438808955	0.130764897871801	0.123304471644572	0.993213024921215	0.211815329521303	0.915086829665608	1
Merged-chr9-120941094-3	chr9	120940994	120941194	+	644.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007614, intron 1 of 14)	L2|LINE|L2	7516.0	NM_001165902	12387.0	Mm.291928	NM_007614	ENSMUSG00000006932	Ctnnb1	Bfc|Catnb|Mesc	catenin (cadherin associated protein), beta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-62054195-1	chr18	62054095	62054295	+	666.666687	f0_balb.idr	Intergenic	Intergenic	101120.0	NM_172628	225608.0	Mm.262320	NM_172628	ENSMUSG00000045629	Sh3tc2	D430044G18Rik	SH3 domain and tetratricopeptide repeats 2	protein-coding	-1.33664238024077	-1.30732081564108	-1.31725863230831	-1.3254218508089	-0.952244101754967	-1.3051672493127	-1.31500892844558	-1.16759341372862	2.25470230303775	0.506155757978017	1
Merged-chr10-69244380-2	chr10	69244280	69244480	+	574.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252638, intron 2 of 11)	intron (NM_001252638, intron 2 of 11)	31186.0	NM_001252638	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-48076888-4	chr4	48076766	48076966	+	932.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015743, intron 7 of 7)	intron (NM_015743, intron 7 of 7)	25620.0	NM_001307989	18124.0	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-9926978-6	chr2	9926844	9927044	+	946.542847	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027748, intron 4 of 6)	intron (NM_027748, intron 4 of 6)	20795.0	NR_152218	100126244.0	Mm.86343	NR_152218		Gm13262	-	predicted gene 13262	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133843051-2	chr4	133842951	133843151	+	673.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31680.0	NM_001285506	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-161998943-4	chr1	161998860	161999060	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038619, intron 20 of 20)	intron (NM_001038619, intron 20 of 20)	-6009.0	NR_040562	72753.0	Mm.452125	NR_040562	ENSMUSG00000090260	2810442N19Rik	-	RIKEN cDNA 2810442N19 gene	ncRNA	0.526547761562554	0.562489865458635	1.20696363785742	1.36804633663477	0.981665326981925	0.565073170522568	1.53138775334102	0.54344990259755	0.0166375045041441	0.992121384839615	0.998431161219273
Merged-chr9-110459330-4	chr9	110459209	110459409	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360306, intron 1 of 9)	MER58B|DNA|hAT-Charlie	17385.0	NM_001360306	270201.0	Mm.41744	NM_177771	ENSMUSG00000054792	Klhl18	A930041K15|AW545966	kelch-like 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-112448698-3	chr2	112448595	112448795	+	867.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6330.0	NM_133749	73024.0	Mm.268027	NM_133749	ENSMUSG00000055943	Emc7	2900064A13Rik|AI451465|ORF3|c11orf3	ER membrane protein complex subunit 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47601301-2	chr17	47601201	47601401	+	720.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_016859, exon 7 of 7)	3' UTR (NM_016859, exon 7 of 7)	7834.0	NM_007632	12445.0	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-76051399-3	chr14	76051296	76051496	+	856.638916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40531.0	NM_026816	68705.0	Mm.20415	NM_026816	ENSMUSG00000067995	Gtf2f2	1110031C13Rik|AI326315	general transcription factor IIF, polypeptide 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-79175532-2	chr17	79175425	79175625	+	854.5833130000001	f0_c57.idr|f1_c57bl6.idr	Intergenic	L1MEc|LINE|L1	123619.0	NM_001316729	70536.0	Mm.293870	NM_027455	ENSMUSG00000024084	Qpct	5730422A13Rik	glutaminyl-peptide cyclotransferase (glutaminyl cyclase)	protein-coding	2.95210032649448	2.85684588847166	2.66733204563131	2.81500784532727	0.982702990289718	1.11057141917092	1.07167937855325	1.0365558363177	-6.07772006109582	1.05060467202665e-06	6.75276152945129e-05
Merged-chr2-16228302-3	chr2	16228192	16228392	+	842.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310455, intron 37 of 38)	intron (NM_001310455, intron 37 of 38)	-128012.0	NM_026162	67448.0	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-12003247-2	chr19	12003147	12003347	+	551.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33493.0	NM_146680	258675.0	Mm.271517	NM_146680	ENSMUSG00000067529	Olfr1423	MOR239-3	olfactory receptor 1423	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-33916017-4	chr17	33915895	33916095	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020625)	promoter-TSS (NM_020625)	-181.0	NM_020625	81630.0	Mm.482096	NM_020625	ENSMUSG00000051390	Zbtb22	1110008J20Rik|AI265210|AI415166|Bing1|Zfp297	zinc finger and BTB domain containing 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-35065708-3	chr4	35065602	35065802	+	744.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178061, intron 2 of 3)	intron (NM_178061, intron 2 of 3)	-86353.0	NM_199157	387510.0	Mm.386929	NM_199157	ENSMUSG00000042993	Ifnk	-	interferon kappa	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-59222684-4	chr10	59222587	59222787	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024911)	promoter-TSS (NM_001024911)	765.0	NM_172939	268301.0	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-118373181-3	chr2	118373064	118373264	+	841.7222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_201367, exon 1 of 3)	exon (NM_201367, exon 1 of 3)	255.0	NM_201367	381413.0	Mm.70979	NM_201367	ENSMUSG00000040133	Gpr176	Gm1012	G protein-coupled receptor 176	protein-coding	1.60775126366934	2.19198109923329	2.20425586737539	0.968570799199137	0.940260214801399	1.84208962485827	2.22367355724669	0.971979087436745	-0.569945870134947	0.655227876206528	0.988361083571276
Merged-chr1-56089691-3	chr1	56089589	56089789	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	70711.0	NR_126076	69356.0	Mm.393775	NR_126075	ENSMUSG00000100372	1700003I22Rik	-	RIKEN cDNA 1700003I22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-58231336-2	chr10	58231236	58231436	+	736.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081954, exon 1 of 1)	exon (NM_001081954, exon 1 of 1)	1339.0	NM_001081954	664783.0	Mm.482575	NM_001081954		Dux	AW822073|Dux4|Duxbl|EG664783	double homeobox	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-94612925-2	chr3	94612825	94613025	+	596.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011656, exon 13 of 13)	3' UTR (NM_011656, exon 13 of 13)	-30209.0	NM_029721	76742.0	Mm.28160	NM_029721	ENSMUSG00000028136	Snx27	5730552M22Rik|ESTM45|ESTM47|R75405	sorting nexin family member 27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-51316471-3	chr13	51316369	51316569	+	956.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-92149.0	NM_010101	13610.0	Mm.136736	NM_010101	ENSMUSG00000067586	S1pr3	AI132464|Edg3|Lpb3|S1p3	sphingosine-1-phosphate receptor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-67506575-4	chr8	67506479	67506679	+	899.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER3D-int|LTR|ERVK	11631.0	NM_010874	17961.0	Mm.4695	NM_010874	ENSMUSG00000051147	Nat2	AV377607	N-acetyltransferase 2 (arylamine N-acetyltransferase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-69668766-2	chr18	69668666	69668866	+	800.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 15 of 19)	intron (NM_001361128, intron 15 of 19)	-256793.0	NM_201362	381175.0	Mm.266831	NM_201362	ENSMUSG00000038903	Ccdc68	BC046343	coiled-coil domain containing 68	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-78048597-3	chr2	78048507	78048707	+	900.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2570.0	NR_108098	78158.0	Mm.78473	NR_108098	ENSMUSG00000085431	4930440I19Rik	-	RIKEN cDNA 4930440I19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-61056001-2	chr9	61055901	61056101	+	903.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38932.0	NR_040767	330956.0	Mm.207985	NR_040767	ENSMUSG00000111290	Gm5122	A430102L10	predicted gene 5122	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-23979569-4	chr10	23979474	23979674	+	736.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6072.0	NM_001010828	215855.0	Mm.377237	NM_001010828	ENSMUSG00000045111	Taar6	Gm228|taR-6	trace amine-associated receptor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-15753414-2	chr6	15753314	15753514	+	622.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175088, intron 3 of 4)	intron (NM_175088, intron 3 of 4)	32753.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111032051-2	chr12	111031951	111032151	+	839.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7747.0	NM_198023	217864.0	Mm.23808	NM_198023	ENSMUSG00000037896	Rcor1	5730409O11|6720480E22Rik|AU042633|D12Wsu95e|Rocr1|mKIAA0071	REST corepressor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-22990922-2	chr11	22990822	22991022	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009837, intron 1 of 13)	CpG	329.0	NM_009837	12464.0	Mm.296985	NM_009837	ENSMUSG00000007739	Cct4	2610204B21Rik|A45|C78323|Cctd	chaperonin containing Tcp1, subunit 4 (delta)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-100495934-2	chr15	100495834	100496034	+	602.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153407)	promoter-TSS (NM_153407)	-695.0	NM_153407	207785.0	Mm.294969	NM_153407	ENSMUSG00000044636	Csrnp2	CSRNP-2|Csnrp2|taip-12	cysteine-serine-rich nuclear protein 2	protein-coding	-1.10384998116487	-1.07946603826229	-1.09181520747217	-1.09984628216847	-1.10325314425446	-1.07678992177872	-1.08901962624914	-0.315793331868817	3.00679100283758	0.36959816332642	1
Merged-chr14-65585468-2	chr14	65585368	65585568	+	663.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_028811, intron 3 of 14)	RLTR13C1|LTR|ERVK	7644.0	NM_001253812	74195.0	Mm.29719	NM_028811	ENSMUSG00000022031	Elp3	2610507P14Rik|KAT9	elongator acetyltransferase complex subunit 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-74772388-2	chr1	74772288	74772488	+	703.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009526, intron 1 of 3)	intron (NM_009526, intron 1 of 3)	496.0	NM_009526	22420.0	Mm.268282	NM_009526	ENSMUSG00000033227	Wnt6	AA409270|Wnt-6	wingless-type MMTV integration site family, member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-77343921-4	chr14	77343816	77344016	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253759, intron 3 of 19)	intron (NM_001253759, intron 3 of 19)	162952.0	NR_033141	629678.0	Mm.390721	NM_001037935	ENSMUSG00000067973	Gm6994	EG629678	predicted gene 6994	ncRNA	6.51438018056907	6.49001605360553	6.92279669679977	6.79237307184578	6.94217311408	6.03741408493237	7.09957337845364	6.39558630985245	-0.00568860913179883	0.980585972393944	0.998431161219273
Merged-chr8-126563872-4	chr8	126563776	126563976	+	917.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29560.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	0.972088824233939	1.57100292190792	1.6453753448613	1.59865330490257	1.29220920870228	1.58247270828631	1.65851202385397	1.60690642161696	0.234750125297251	0.84142016034521	0.998431161219273
Merged-chr5-34562983-2	chr5	34562883	34563083	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001145858, exon 13 of 13)	3' UTR (NM_001145858, exon 13 of 13)	-10681.0	NM_001024458	11518.0	Mm.289106	NM_013457	ENSMUSG00000029106	Add1	AI256389	adducin 1 (alpha)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-39517219-1	chr7	39517119	39517319	+	802.0	f1_balb.idr	promoter-TSS (NM_001004139)	promoter-TSS (NM_001004139)	-547.0	NM_001004139	70227.0	Mm.333800	NM_001004139	ENSMUSG00000068959	Zfp619	3000002G13Rik	zinc finger protein 619	protein-coding	1.24748448735894	1.72943578138488	1.15945606988663	1.1296570295696	1.25790748571262	0.945424881713388	2.0221222827066	2.40495121092505	1.42082536760579	0.237812676075166	0.734370450805304
Merged-chr19-53425854-2	chr19	53425754	53425954	+	782.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35220.0	NM_172429	76479.0	Mm.313687	NM_172429	ENSMUSG00000025024	Smndc1	-	survival motor neuron domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-37185640-2	chr17	37185540	37185740	+	768.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8252.0	NM_023137	24108.0	Mm.140210	NM_023137	ENSMUSG00000035186	Ubd	FAT10	ubiquitin D	protein-coding	-0.363486710238817	0.260752842986585	-0.178058890620395	-0.358098017234921	-0.362685517218754	-0.349683100036688	0.107914100804532	-0.357530561907563	-0.832042388602584	0.740142814042933	1
Merged-chr4-149654427-2	chr4	149654327	149654527	+	959.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001029837, intron 16 of 23)	intron (NM_001029837, intron 16 of 23)	1140.0	NR_105990	102465983.0		NR_105990	ENSMUSG00000098580	Mir7023	Gm27912|mmu-mir-7023	microRNA 7023	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-172555854-2	chr1	172555739	172555939	+	777.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177723)	promoter-TSS (NM_177723)	-99.0	NM_177723	240916.0	Mm.71940	NM_177723	ENSMUSG00000049598	Vsig8	A030011M19|EG240916	V-set and immunoglobulin domain containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-79348094-2	chr17	79347994	79348194	+	710.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026514, intron 1 of 1)	L3b|LINE|CR1	6997.0	NM_026514	260409.0	Mm.140601	NM_026514	ENSMUSG00000036533	Cdc42ep3	3200001F04Rik|AA986861|Borg2|Cep3|UB1	CDC42 effector protein (Rho GTPase binding) 3	protein-coding	-2.18138529563533	-2.15523716995652	-2.1631445789866	-2.16963996020037	-2.05513010215571	-2.15352360143315	-2.16135451490766	-2.16847729006863	0.759018020146679	0.829933115115583	1
Merged-chr18-35119746-4	chr18	35119639	35119839	+	899.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009818, intron 1 of 17)	intron (NM_009818, intron 1 of 17)	827.0	NM_009818	12385.0	Mm.18962	NM_009818	ENSMUSG00000037815	Ctnna1	2010010M04Rik|AA517462|AI988031|Catna1	catenin (cadherin associated protein), alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-80371656-3	chr1	80371563	80371763	+	911.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-30973.0	NM_016716	26554.0	Mm.12665	NM_016716	ENSMUSG00000004364	Cul3	KIAA0617	cullin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-113208281-4	chr7	113208158	113208358	+	830.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357070, intron 1 of 19)	CpG	793.0	NM_007489	11865.0	Mm.33970	NM_007489	ENSMUSG00000055116	Arntl	Arnt3|BMAL1b|Bmal1|MOP3|bHLHe5|bmal1b'	aryl hydrocarbon receptor nuclear translocator-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-88263024-1	chr1	88262924	88263124	+	637.0	f0_balb.idr	TTS (NR_040291)	TTS (NR_040291)	6384.0	NR_040291	78605.0	Mm.384762	NR_040291		6430706D22Rik	-	RIKEN cDNA 6430706D22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21912429-2	chr9	21912329	21912529	+	678.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_031874, intron 4 of 4)	intron (NM_031874, intron 4 of 4)	5754.0	NM_031874	19340.0	Mm.260157	NM_031874	ENSMUSG00000019066	Rab3d	C130057E11Rik	RAB3D, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-18836649-4	chr16	18836568	18836768	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033164)	promoter-TSS (NM_001033164)	88.0	NM_001033164	72307.0	Mm.36907	NM_001033164	ENSMUSG00000071632	2510002D24Rik	2410043I01Rik|AA163535|AA409624|DXMgi27	RIKEN cDNA 2510002D24 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-66238729-2	chr14	66238629	66238829	+	918.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	-24905.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-26023910-4	chr8	26023838	26024038	+	927.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_207659, exon 22 of 22)	3' UTR (NM_207659, exon 22 of 22)	-8337.0	NM_008033	14272.0	Mm.3496	NM_008033	ENSMUSG00000015994	Fnta	FTA	farnesyltransferase, CAAX box, alpha	protein-coding	3.52351307045519	3.51476848765942	3.49005749492694	4.45194896206099	4.01812149979018	3.73422452370608	3.19810771694606	4.69068094683141	0.291521509685736	0.583526232761687	0.966599221005409
Merged-chr5-124014117-4	chr5	124014090	124014290	+	832.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177876, intron 1 of 3)	intron (NM_177876, intron 1 of 3)	17338.0	NR_105999	102465625.0		NR_105999	ENSMUSG00000098454	Mir7032	Gm27309|mmu-mir-7032	microRNA 7032	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-27387887-4	chr16	27387775	27387975	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1081.0	NM_001025615	67501.0	Mm.258985	NM_026202	ENSMUSG00000038127	Ccdc50	C3orf6	coiled-coil domain containing 50	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128770371-2	chr2	128770231	128770431	+	833.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 8 of 18)	intron (NM_008587, intron 8 of 18)	-47972.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	1.86979409090387	1.48112540702293	1.94257829038276	1.6705731547432	1.88616835543188	1.06244646479455	1.73374974912889	1.02867776630417	-0.818949918279647	0.492127391735182	0.93495372839207
Merged-chr9-15010469-4	chr9	15010375	15010575	+	972.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019482, intron 2 of 4)	intron (NM_019482, intron 2 of 4)	35003.0	NM_019482	55991.0	Mm.142253	NM_019482	ENSMUSG00000031934	Panx1	AI847747	pannexin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-143044696-2	chr7	143044596	143044796	+	862.6666869999999	f0_balb.idr|f1_balb.idr	intron (NR_110355, intron 1 of 4)	MT2A|LTR|ERVL	-8054.0	NM_133655	12520.0	Mm.806	NM_133655	ENSMUSG00000037706	Cd81	Tapa-1|Tapa1|Tspan28	CD81 antigen	protein-coding	2.89600144586489	1.45416016822877	1.40568074002497	2.71040550881837	3.68467191313658	3.01860939468628	2.30643005838725	2.82195431451012	1.38919906849183	0.115813362871335	0.533032893134419
Merged-chr2-34610591-4	chr2	34610365	34610565	+	917.880981	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290625, intron 10 of 11)	B4A|SINE|B4	144767.0	NM_001356441	66691.0	Mm.156452	NM_025709	ENSMUSG00000026867	Gapvd1	2010005B09Rik|4432404J10Rik|AW108497|Gapex-5|RAP6|RME-6|mKIAA1521	GTPase activating protein and VPS9 domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-40525608-3	chr10	40525508	40525708	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44754.0	NM_027572	70840.0	Mm.332570	NM_027572	ENSMUSG00000019834	Slc22a16	4921504E14Rik|CT2|FLIPT2|OCT6|OKB1	solute carrier family 22 (organic cation transporter), member 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-81036824-4	chr3	81036728	81036928	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_019971, exon 1 of 6)	5' UTR (NM_019971, exon 1 of 6)	412.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-30087456-3	chr18	30087347	30087547	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-185418.0	NM_181414	225326.0	Mm.194127	NM_181414	ENSMUSG00000033628	Pik3c3	5330434F23Rik|Vps34	phosphatidylinositol 3-kinase catalytic subunit type 3	protein-coding	3.95412084453863	3.38695740001756	4.11528861551328	1.93782582950293	4.07007237264392	3.30474996487795	2.64991329964867	4.02673137270472	0.0868996382276938	0.895724816990543	0.998431161219273
Merged-chr9-32143256-2	chr9	32143156	32143356	+	557.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001195632, intron 2 of 21)	MTC|LTR|ERVL-MaLR	27120.0	NM_001195632	330914.0	Mm.46683	NM_177379	ENSMUSG00000041444	Arhgap32	3426406O18Rik|Gc-gap|Grit|Px-rics|Rics|mKIAA0712|p200Rhogap|p250Gap	Rho GTPase activating protein 32	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59639812-2	chr15	59639712	59639912	+	811.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8842.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-114605421-3	chr2	114605331	114605531	+	879.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025675, intron 3 of 8)	L1_Mus4|LINE|L1	49533.0	NM_001356438	66632.0	Mm.117809	NM_025675	ENSMUSG00000057147	Dph6	5730421E18Rik|Atpbd4	diphthamine biosynthesis 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-8494322-2	chr16	8494222	8494422	+	687.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19107.0	NM_001170978	268860.0	Mm.259315	NM_172961	ENSMUSG00000057880	Abat	9630038C02Rik|AI255750|Gabaat|Gabat|Gm9851|I54|Laibat|X61497	4-aminobutyrate aminotransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-58104519-4	chr11	58104414	58104614	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356477, intron 1 of 6)	CpG	285.0	NM_001356477	69125.0	Mm.28910	NM_026949	ENSMUSG00000020515	Cnot8	1500015I04Rik|1810022F04Rik|AA536816|AU015770|AU043059	CCR4-NOT transcription complex, subunit 8	protein-coding	4.27817864629802	4.78662248521373	4.26763911531467	3.24486927589569	4.60374002155256	3.97251094288919	3.58179615453757	3.86884980054796	-0.233280587329761	0.632663124223101	0.982230082053879
Merged-chr11-96917886-2	chr11	96917786	96917986	+	674.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-1372.0	NM_030248	80280.0	Mm.28297	NM_030248	ENSMUSG00000018669	Cdk5rap3	1810007E24Rik|BC002318|C53|C81486|HSF-27|IC53|LZAP|MST016	CDK5 regulatory subunit associated protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-113873120-4	chr5	113873001	113873201	+	949.43335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011779, intron 2 of 10)	intron (NM_011779, intron 2 of 10)	35605.0	NM_011779	23790.0	Mm.260158	NM_011779	ENSMUSG00000004530	Coro1c	AL022675|AW455561|AW548837	coronin, actin binding protein 1C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-96302889-3	chr7	96302780	96302980	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310760, intron 1 of 32)	intron (NM_001310760, intron 1 of 32)	-2787.0	NR_105818	102465210.0		NR_105818	ENSMUSG00000099030	Mir6394	Gm27929|mmu-mir-6394	microRNA 6394	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-70321103-2	chr16	70321003	70321203	+	785.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028803, intron 1 of 15)	intron (NM_028803, intron 1 of 15)	7154.0	NM_028803	74185.0	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-74663828-2	chr11	74663728	74663928	+	618.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081158, exon 12 of 26)	exon (NM_001081158, exon 12 of 26)	14333.0	NM_001081158	74148.0	Mm.214574	NM_001081158	ENSMUSG00000020741	Cluh	1300001I01Rik|Kiaa0664|mKIAA0664	clustered mitochondria (cluA/CLU1) homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-35062961-2	chr7	35062861	35063061	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	AT_rich|Low_complexity|Low_complexity	-6395.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115266022-2	chr11	115265922	115266122	+	570.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010350, intron 3 of 14)	intron (NM_010350, intron 3 of 14)	1221.0	NM_010350	14813.0	Mm.39090	NM_010350	ENSMUSG00000020734	Grin2c	GluN2C|NMDAR2C|NR2C	glutamate receptor, ionotropic, NMDA2C (epsilon 3)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-10312195-3	chr17	10312085	10312285	+	660.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021881, intron 1 of 6)	intron (NM_021881, intron 1 of 6)	7176.0	NM_021881	19317.0	Mm.130694	NM_021881	ENSMUSG00000062078	Qk	1110003F05Rik|1500005P18|QkI|l(17)-1Wis|l17Wis1	quaking	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-127588108-2	chr5	127588008	127588208	+	610.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	29284.0	NM_133895	100561.0	Mm.28506	NM_133895	ENSMUSG00000029416	Slc15a4	AA987064|AW742963|C130069N12Rik|PHT1|PTR4	solute carrier family 15, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80149536-4	chr10	80149419	80149619	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001305799)	promoter-TSS (NM_001305799)	-163.0	NM_001305799	59090.0	Mm.143813	NM_021565	ENSMUSG00000035621	Midn	3000003C15Rik	midnolin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-121641022-2	chr9	121640922	121641122	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026915, intron 1 of 5)	intron (NM_026915, intron 1 of 5)	571.0	NM_026915	69032.0	Mm.33351	NM_026915	ENSMUSG00000032530	Lyzl4	1810009N24Rik|AI504271|Lyc4|Lyza	lysozyme-like 4	protein-coding	0.433841651636368	0.507009689654836	0.887430527029282	0.293114354127399	0.684532364310414	1.0623755405379	0.300440164101418	0.29411168573603	0.46522986895744	0.795570054430604	1
Merged-chr1-137852440-4	chr1	137852325	137852525	+	984.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA4|LINE|L1	-114030.0	NR_029795	735252.0		NR_029795	ENSMUSG00000065565	Mir181a-1	Mirn181a-1|Mirn213|miR-213|mir-181a-1|mmu-mir-213	microRNA 181a-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134115787-4	chr6	134115692	134115892	+	988.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 2 of 8)	intron (NM_001303102, intron 2 of 8)	80092.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	4.9007204625434	4.85486593880195	4.66730536702482	4.36618790388339	4.56232635376365	3.1519826681067	4.04420998933953	3.92013178024152	-0.883759038434948	0.0391056233310024	0.281738952397138
Merged-chr6-100367481-2	chr6	100367381	100367581	+	720.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-80123.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10294746-6	chr19	10294654	10294854	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198114, intron 1 of 19)	intron (NM_198114, intron 1 of 19)	10123.0	NM_198114	269060.0	Mm.329718	NM_198114	ENSMUSG00000035735	Dagla	Nsddr	diacylglycerol lipase, alpha	protein-coding	3.60477333409791	4.22048737121431	3.50517930813946	3.92154650318085	4.02508693121503	3.74581244634561	4.11824840327783	3.7442420717917	0.118151460705048	0.800750837157692	0.998431161219273
Merged-chr4-88433568-4	chr4	88433473	88433673	+	966.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025760, intron 3 of 6)	intron (NM_025760, intron 3 of 6)	5353.0	NM_025760	66775.0	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133215022-1	chr4	133214922	133215122	+	606.0	f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	-2486.0	NM_008154	14748.0	Mm.4721	NM_008154	ENSMUSG00000049649	Gpr3	Gpcr20|Gpcr21|Gpcr3	G-protein coupled receptor 3	protein-coding	1.87833742737545	0.858484916300935	2.45227104846013	0.81804693242257	1.71113258425521	0.86343509497626	1.88570505812649	0.821226264643004	-0.804871336181652	0.571941431333331	0.963681627499011
Merged-chr18-84085270-3	chr18	84085177	84085377	+	939.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081300, intron 1 of 1)	GC_rich|Low_complexity|Low_complexity	1285.0	NM_001081300	110796.0	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97101935-2	chr11	97101835	97102035	+	770.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_019507, intron 2 of 5)	intron (NM_019507, intron 2 of 5)	13396.0	NM_019507	57765.0	Mm.94519	NM_019507	ENSMUSG00000001444	Tbx21	TBT1|Tbet|Tblym	T-box 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-73203032-1	chr5	73202932	73203132	+	626.0	f1_balb.idr	intron (NM_028194, intron 2 of 62)	Lx8|LINE|L1	53586.0	NM_028194	72313.0	Mm.260594	NM_028194	ENSMUSG00000070733	Fryl	2010313D22Rik|2310004H21Rik|2510002A14Rik|9030227G01Rik|mKIAA0826	FRY like transcription coactivator	protein-coding	-1.7024385483431	-1.81249224917775	-1.82134771053534	-1.82862185015837	-1.70038292649591	-1.81057323376012	-1.81934302819017	-1.82731978264371	0.0376840119903864	0.991491645451152	1
Merged-chr2-153150552-2	chr2	153150452	153150652	+	817.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001172117, intron 12 of 12)	intron (NM_001172117, intron 12 of 12)	-10749.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-75788019-2	chr14	75787919	75788119	+	734.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026232)	promoter-TSS (NM_026232)	-982.0	NM_026232	67554.0	Mm.46067	NM_026232	ENSMUSG00000022003	Slc25a30	4933433D23Rik|AV025504|AV221431|AW319655|KMCP1	solute carrier family 25, member 30	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-174239966-1	chr1	174239866	174240066	+	601.0	f0_balb.idr	intron (NM_011465, intron 43 of 51)	intron (NM_011465, intron 43 of 51)	11010.0	NM_146715	258710.0	Mm.377647	NM_146715	ENSMUSG00000050788	Olfr419	MOR267-6	olfactory receptor 419	protein-coding	1.12384474846591	1.29549640651868	1.24355097640585	2.11845354339522	2.78670283209474	3.23747987395069	3.46896930179462	3.66998333352852	4.0467300393262	3.73109102209633e-05	0.00137881817504451
Merged-chr13-14036571-3	chr13	14036509	14036709	+	901.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178337, intron 1 of 16)	L1_Mus3|LINE|L1	3029.0	NR_130788	70430.0	Mm.260209	NM_178337	ENSMUSG00000039233	Tbce	2610206D02Rik|C530005D02Rik|pmn	tubulin-specific chaperone E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-8941105-2	chr19	8941005	8941205	+	732.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011842)	promoter-TSS (NM_011842)	-815.0	NM_011842	23942.0	Mm.25339	NM_011842	ENSMUSG00000071646	Mta2	AW550797|Mata1l1|Mta1l1|mmta2	metastasis-associated gene family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-63906716-4	chr5	63906601	63906801	+	912.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	62196.0	NM_145923	100532.0	Mm.243632	NM_145923	ENSMUSG00000047881	Rell1	AA536743	RELT-like 1	protein-coding	-1.27480050717774	-0.604729833679879	-1.25573295904267	-1.26493563944758	-1.27428069156472	-1.24210192204986	-1.25319678955844	-1.26328836405502	-2.6632876257018	0.439827081912762	1
Merged-chr9-58979253-3	chr9	58979155	58979355	+	851.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008684, intron 4 of 28)	intron (NM_008684, intron 4 of 28)	57186.0	NM_001042752	18007.0	Mm.42249	NM_008684	ENSMUSG00000032340	Neo1	2610028H22Rik|AI327052|D930014N22Rik|Igdcc2	neogenin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-96856769-4	chr5	96856666	96856866	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	63381.0	NM_013470	11745.0	Mm.7214	NM_013470	ENSMUSG00000029484	Anxa3	Anx3	annexin A3	protein-coding	1.41132045963815	0.943440973799791	2.22541646438838	1.33215087327274	1.42428204766367	0.948514038397098	2.5398305507018	1.33945397890832	0.422546413639909	0.732098216010934	0.998431161219273
Merged-chr5-115154702-1	chr5	115154602	115154802	+	724.0	f1_c57bl6.idr	intron (NM_175403, intron 1 of 4)	intron (NM_175403, intron 1 of 4)	3474.0	NM_175403	109154.0	Mm.153963	NM_175403	ENSMUSG00000048578	Mlec	2410014A08Rik|AI850530|ESTM19|X83352|mKIAA0152	malectin	protein-coding	0.828671520681615	0.706247524366234	-0.106340701039881	-0.111657740492222	-0.119246677939852	-0.0979820555578469	-0.104828560374108	-0.110725747544464	-4.13611534084871	0.0745637064827593	1
Merged-chr6-97483478-1	chr6	97483378	97483578	+	661.0	f1_balb.idr	intron (NM_145148, intron 2 of 23)	B4A|SINE|B4	4342.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	2.71454666605748	1.4307556579564	3.60207968506982	2.19245679980962	2.73819333573257	1.44096507360255	2.56087303297065	3.18221783005372	-0.204509864736023	0.826689924750352	0.998431161219273
Merged-chr12-3238016-5	chr12	3237941	3238141	+	806.599976	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_015551, exon 4 of 7)	non-coding (NR_015551, exon 4 of 7)	2250.0	NR_015551	74173.0	Mm.309774	NM_028796	ENSMUSG00000079179	Rab10os	1700012B15Rik|1810036A22Rik	RAB10, member RAS oncogene family, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-7994285-4	chr14	7994150	7994350	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007870)	promoter-TSS (NM_007870)	-68.0	NM_007870	13421.0	Mm.272258	NM_007870	ENSMUSG00000025279	Dnase1l3	DNasegamma|Dhp2|Lsd	deoxyribonuclease 1-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5054047-3	chr19	5053949	5054149	+	772.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145495, intron 9 of 9)	intron (NM_145495, intron 9 of 9)	3241.0	NM_145495	225870.0	Mm.271922	NM_145495	ENSMUSG00000024883	Rin1	-	Ras and Rab interactor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-24492728-4	chr12	24492630	24492830	+	953.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5851.0	NM_020614	21340.0	Mm.39082	NM_020614	ENSMUSG00000059669	Taf1b	4930408G01Rik|A230108M10Rik|TAFI68|Tafi86|p63	TATA-box binding protein associated factor, RNA polymerase I, B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140795051-3	chr5	140794946	140795146	+	977.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010302, intron 1 of 3)	intron (NM_010302, intron 1 of 3)	35385.0	NM_010302	14673.0	Mm.370185	NM_010302	ENSMUSG00000000149	Gna12	AI414047|AI504261|Galpha12	guanine nucleotide binding protein, alpha 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152400007-2	chr1	152399907	152400107	+	693.5	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_177756, exon 1 of 12)	5' UTR (NM_177756, exon 1 of 12)	140.0	NM_177756	269132.0	Mm.23782	NM_177756	ENSMUSG00000032649	Colgalt2	AI427652|D730024P12|Glt25d2	collagen beta(1-O)galactosyltransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-103422378-2	chr11	103422278	103422478	+	563.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9714.0	NM_183034	353047.0	Mm.18556	NM_183034	ENSMUSG00000034247	Plekhm1	AP162|B2|BC038943|D330036J23Rik	pleckstrin homology domain containing, family M (with RUN domain) member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32237268-6	chr2	32237114	32237314	+	972.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145145, intron 1 of 19)	intron (NM_145145, intron 1 of 19)	531.0	NM_145145	99011.0	Mm.31192	NM_145145	ENSMUSG00000039254	Pomt1	AI505244	protein-O-mannosyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-55508894-2	chr4	55508791	55508991	+	980.166626	f0_balb.idr|f1_balb.idr	Intergenic	MTEb|LTR|ERVL-MaLR	23584.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	2.89013973237277	2.71896904508731	2.91323142605786	2.5322708471239	3.93217001741944	4.50430551831522	4.08528227595789	3.66985681669812	2.01635586753458	0.000262301460023455	0.00662081258911939
Merged-chr14-120323214-4	chr14	120323042	120323242	+	822.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360376, intron 1 of 8)	intron (NM_001360376, intron 1 of 8)	16690.0	NM_001360376	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-16994650-2	chr10	16994550	16994750	+	718.833313	f1_balb.idr|f1_c57bl6.idr	intron (NR_038020, intron 1 of 8)	intron (NR_038020, intron 1 of 8)	101132.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-71043192-2	chr2	71043092	71043292	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145524, intron 1 of 9)	MTD|LTR|ERVL-MaLR	12414.0	NM_145524	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-5039555-1	chr2	5039455	5039655	+	920.0	f1_balb.idr	intron (NM_001356487, intron 6 of 13)	intron (NM_001356487, intron 6 of 13)	24562.0	NM_181848	71648.0	Mm.116942	NM_181848	ENSMUSG00000026672	Optn	4930441O07Rik|FIP2|HYPL|NRP	optineurin	protein-coding	-0.433419496605968	0.346328138972417	-0.423626616881733	-0.42729803101504	-0.43250674661367	0.116408396509669	-0.422579234343479	-0.426655786864084	-0.714747771474442	0.789037825580491	1
Merged-chr7-7171757-1	chr7	7171657	7171857	+	543.0	f1_balb.idr	intron (NM_146179, intron 1 of 3)	intron (NM_146179, intron 1 of 3)	404.0	NM_146179	232854.0	Mm.184857	NM_146179	ENSMUSG00000034538	Zfp418	A230102I05Rik	zinc finger protein 418	protein-coding	2.08792684660406	2.56445519212159	2.37446086683912	1.93169585464612	1.52584203077387	2.58327922076974	2.27652368348083	2.32028506194522	-0.0688423701419122	0.937893305548285	0.998431161219273
Merged-chr10-13201959-4	chr10	13201905	13202105	+	944.857178	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8868.0	NM_181470	353258.0	Mm.117581	NM_181470	ENSMUSG00000019814	Ltv1	2610020N02Rik	LTV1 ribosome biogenesis factor	protein-coding	2.47177158587456	3.23212699978754	1.5199887916042	2.1709053461645	3.53534987841677	3.82909999208992	2.84143358509138	2.95641680039669	1.51002426906835	0.0442096871833997	0.301995749135141
Merged-chr12-112664214-1	chr12	112664114	112664314	+	565.0	f1_balb.idr	intron (NM_001331107, intron 2 of 13)	intron (NM_001331107, intron 2 of 13)	-4863.0	NR_105904	102465566.0		NR_105904	ENSMUSG00000098380	Mir6939	Gm27498|mmu-mir-6939	microRNA 6939	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-77318321-2	chr16	77318221	77318421	+	766.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11007.0	NR_015543	77994.0	Mm.394688	NR_015543	ENSMUSG00000090386	Mir99ahg	2810055G20Rik|D730043B02Rik	Mir99a and Mirlet7c-1 host gene (non-protein coding)	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80591031-2	chr10	80590931	80591131	+	822.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145421)	promoter-TSS (NM_145421)	-690.0	NM_145421	216169.0	Mm.29802	NM_145421	ENSMUSG00000003346	Abhd17a	1700013O15Rik|BC005632|D10Bwg1364e|Fam108a	abhydrolase domain containing 17A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-79860607-2	chr10	79860507	79860707	+	789.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001170935, exon 9 of 9)	3' UTR (NM_001170935, exon 9 of 9)	-1980.0	NR_105875	102465549.0		NR_105875	ENSMUSG00000098562	Mir6910	Gm27763|mmu-mir-6910	microRNA 6910	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-56776280-3	chr19	56776145	56776345	+	885.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37438.0	NM_170757	213993.0	Mm.469677	NM_170757	ENSMUSG00000035173	Ccdc186	1810028B20Rik|A630007B06Rik|AI159700|Otg1	coiled-coil domain containing 186	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-45579048-4	chr17	45578942	45579142	+	763.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-5781.0	NM_008302	15516.0	Mm.2180	NM_008302	ENSMUSG00000023944	Hsp90ab1	90kDa|AL022974|C81438|Hsp84|Hsp84-1|Hsp90|Hspcb	heat shock protein 90 alpha (cytosolic), class B member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-95330879-3	chr10	95330777	95330977	+	733.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5399.0	NR_045337	69629.0	Mm.250542	NR_045337	ENSMUSG00000100550	2310039L15Rik	A53T-syn|G2-3|PrPsynA53T|Tg(Prnp-SNCA*A53T)23Mkle	RIKEN cDNA 2310039L15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-95830077-4	chr7	95829971	95830171	+	887.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-341173.0	NM_001310762	23966.0	Mm.254610	NM_011858	ENSMUSG00000048078	Tenm4	Doc4|ELM2|Odz4|R75022|Ten-m4|l(7)-3Rn|l7Rn3|mKIAA1302	teneurin transmembrane protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152597639-3	chr1	152597556	152597756	+	899.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346119, intron 2 of 17)	intron (NM_001346119, intron 2 of 17)	27561.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165920500-2	chr2	165920400	165920600	+	875.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-35662.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-30584198-2	chr14	30584095	30584295	+	818.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	12046.0	NR_037237	100526475.0		NR_037237	ENSMUSG00000093156	Mir3076	mir-3076|mmu-mir-3076	microRNA 3076	ncRNA	3.61052022231612	4.39855003140985	3.0930872206818	2.90588214803073	1.10369790496244	1.30121975831288	1.56707434713308	1.75896575811212	-4.71150692621196	5.26801724409683e-06	0.000266316029050592
Merged-chr16-24964519-4	chr16	24964417	24964617	+	872.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 10 of 12)	intron (NM_178665, intron 10 of 12)	-95122.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-148793269-2	chr5	148793177	148793377	+	641.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15314.0	NR_131106	78015.0	Mm.243839	NR_131106	ENSMUSG00000085740	4930505K14Rik	-	RIKEN cDNA 4930505K14 gene	ncRNA	-0.877999912835787	-0.862650162525095	-0.868440155809072	-0.872003619364467	-0.877101422327144	-0.859260676738364	-0.867428019291027	0.2182907524777	3.59113409116889	0.226256010831697	1
Merged-chr13-112998554-4	chr13	112998443	112998643	+	844.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001037914, exon 6 of 7)	exon (NM_001037914, exon 6 of 7)	4675.0	NM_001037914	622408.0	Mm.360976	NM_001037914	ENSMUSG00000074651	Mcidas	EG622408|Gm6320|Idas|Mci|Mcin	multiciliate differentiation and DNA synthesis associated cell cycle protein	protein-coding	1.20809265589268	0.537033721116277	1.80762472017883	0.512250787725949	0.690739630171872	0.54011193749522	0.526262473751419	1.50971593835003	-0.916253549994559	0.581624683283851	0.966599221005409
Merged-chr2-145885968-2	chr2	145885898	145886098	+	755.75	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028724, exon 13 of 13)	3' UTR (NM_028724, exon 13 of 13)	-17243.0	NM_026425	67877.0	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	-0.914587585352826	-1.14968844836017	-1.16012564310979	-1.16869906563582	-0.801023986531728	-1.14742666471813	-1.15776289099527	-1.16716442710272	0.46649237519341	0.890119923761052	1
Merged-chr15-103241692-2	chr15	103241592	103241792	+	887.2000119999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039129, intron 3 of 10)	B1_Mus2|SINE|Alu	1238.0	NR_002883	434858.0	Mm.391346	NR_002883		Gm5643	EG434858	heterogeneous nuclear ribonucleoprotein A1 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-90953828-2	chr8	90953728	90953928	+	691.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177224, intron 3 of 39)	intron (NM_177224, intron 3 of 39)	21579.0	NM_001310530	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-134926355-2	chr4	134926255	134926455	+	616.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023665, intron 3 of 4)	intron (NM_023665, intron 3 of 4)	2730.0	NM_023665	27981.0	Mm.331964	NM_023665	ENSMUSG00000037266	Rsrp1	2700043I21Rik|D4Ucla2|D4Wsu53e	arginine/serine rich protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-86168750-4	chr15	86168651	86168851	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145475, intron 1 of 12)	intron (NM_145475, intron 1 of 12)	-16977.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-84773083-4	chr12	84772973	84773173	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023409)	promoter-TSS (NM_023409)	39.0	NM_023409	67963.0	Mm.282556	NM_023409	ENSMUSG00000021242	Npc2	2700012J19Rik|AA408070|AU045843|HE1	NPC intracellular cholesterol transporter 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-58530596-4	chr18	58530498	58530698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25642.0	NM_001081072	225579.0	Mm.258517	NM_001081072	ENSMUSG00000024600	Slc27a6	4732438L20Rik|FACVL2|FATP6|VLCS-H1	solute carrier family 27 (fatty acid transporter), member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-12569921-4	chr13	12569812	12570012	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026184, intron 1 of 15)	intron (NM_026184, intron 1 of 15)	4029.0	NM_026184	67475.0	Mm.358706	NM_026184	ENSMUSG00000057069	Ero1lb	1300013B24Rik|1700065B09Rik|AI447560|Ero1b|ero1-beta	ERO1-like beta (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-68820091-1	chr18	68819991	68820191	+	709.0	f0_balb.idr	Intergenic	Intergenic	80691.0	NR_105774	102465183.0		NR_105774	ENSMUSG00000099300	Mir6356	Gm27461|mmu-mir-6356	microRNA 6356	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-164316884-3	chr1	164316782	164316982	+	753.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178071, intron 3 of 9)	intron (NM_178071, intron 3 of 9)	9210.0	NM_138314	171567.0	Mm.219428	NM_138314	ENSMUSG00000026575	Nme7	D530024H21Rik|Nm23-M7|Nm23-r7	NME/NM23 family member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127122912-2	chr10	127122812	127123012	+	714.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-1752.0	NM_001171026	216440.0	Mm.295246	NM_177614	ENSMUSG00000040462	Os9	4632413K17Rik|AU022351	amplified in osteosarcoma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-27710519-4	chr3	27710405	27710605	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173182)	promoter-TSS (NM_173182)	-53.0	NM_173182	72007.0	Mm.38832	NM_173182	ENSMUSG00000039286	Fndc3b	1600019O04Rik|AW550168|Fad104|mKIAA4164	fibronectin type III domain containing 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-61476246-2	chr10	61476146	61476346	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153542, intron 1 of 4)	intron (NM_153542, intron 1 of 4)	413.0	NM_153542	216011.0	Mm.136116	NM_153542	ENSMUSG00000037151	Lrrc20	BC036304	leucine rich repeat containing 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-88695279-4	chr1	88695171	88695371	+	810.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6920.0	NM_177305	320982.0	Mm.27968	NM_177305	ENSMUSG00000049866	Arl4c	A630084M22Rik|Arl7|LAK	ADP-ribosylation factor-like 4C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-104317461-3	chr11	104317393	104317593	+	702.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285454, intron 6 of 9)	intron (NM_001285454, intron 6 of 9)	86057.0	NM_001285454	17762.0	Mm.1287	NM_010838	ENSMUSG00000018411	Mapt	AI413597|AW045860|Mtapt|Tau	microtubule-associated protein tau	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-47187945-8	chr14	47187819	47188019	+	998.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008102, intron 1 of 5)	intron (NM_008102, intron 1 of 5)	1494.0	NM_008102	14528.0	Mm.10651	NM_008102	ENSMUSG00000037580	Gch1	GTP-CH|GTP-CH-I|GTPCH|Gch	GTP cyclohydrolase 1	protein-coding	4.86821019797421	4.405141479048	5.06295092381972	4.58502922879291	4.23022113192776	4.10173275559944	3.62567506719902	3.40791813415163	-1.1305820018768	0.00660148742063608	0.0818957993941374
Merged-chr19-33227197-4	chr19	33227093	33227293	+	809.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146342, intron 2 of 4)	intron (NM_001146342, intron 2 of 4)	70081.0	NR_039552	100628575.0		NR_039552	ENSMUSG00000106278	Mir3970	mmu-mir-3970|mu-mir-3970	microRNA 3970	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70699636-1	chr8	70699536	70699736	+	1000.0	f0_balb.idr	exon (NM_010592, exon 1 of 1)	exon (NM_010592, exon 1 of 1)	1897.0	NM_001286944	16478.0	Mm.419851	NM_010592	ENSMUSG00000071076	Jund	Jund1	jun D proto-oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-117132061-3	chr4	117132006	117132206	+	667.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001313916, intron 5 of 14)	intron (NM_001313916, intron 5 of 14)	1857.0	NM_013807	12795.0	Mm.259022	NM_013807	ENSMUSG00000028680	Plk3	Cnk|Fnk|PLK-3|PRK	polo like kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83785598-2	chr11	83785498	83785698	+	921.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31961.0	NM_145432	217026.0	Mm.117874	NM_145432	ENSMUSG00000000976	Heatr6	2700008B19Rik|BB135312|BB249351	HEAT repeat containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83269048-2	chr11	83268948	83269148	+	732.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17678.0	NM_001166028	237890.0	Mm.297670	NM_001166028	ENSMUSG00000082101	Slfn14	Gm20|Slfn14-ps	schlafen 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-139580720-2	chr4	139580623	139580823	+	658.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205173, intron 1 of 8)	intron (NM_001205173, intron 1 of 8)	6003.0	NM_001205173	212632.0	Mm.30464	NM_183148	ENSMUSG00000041025	Iffo2	C79267	intermediate filament family orphan 2	protein-coding	-1.23693357297106	-1.04025094496409	-0.762497807208132	-1.22933063607209	-1.23646356211451	-1.20737974486957	-1.21804564851308	-1.22774704973383	-2.53719312693895	0.438060107335038	1
Merged-chr7-125443293-1	chr7	125443193	125443393	+	584.0	f1_balb.idr	Intergenic	RMER10B|LTR|ERVL	-1327.0	NM_029842	77035.0	Mm.307239	NM_029842	ENSMUSG00000030752	Kdm8	3110005O21Rik|Jmjd5	lysine (K)-specific demethylase 8	protein-coding	0.261982527277882	0.286038588755241	0.278217589013351	0.450173988070518	0.962043551395502	1.06397072408023	0.775348781356407	0.27320797234291	3.5727466228849	0.0609397558315724	1
Merged-chr16-35724293-1	chr16	35724193	35724393	+	643.0	f1_balb.idr	intron (NM_153550, intron 5 of 8)	B4A|SINE|B4	45063.0	NM_153550	224132.0	Mm.24094	NM_153550	ENSMUSG00000022848	Dirc2	RCC4	disrupted in renal carcinoma 2 (human)	protein-coding	1.08588006110855	0.576238896079478	0.565150221125739	1.45401636538298	0.544072009066418	1.27705546016131	0.567609205651154	1.2787497440314	-0.0425983530911191	0.979857878699091	0.998431161219273
Merged-chr11-49064201-2	chr11	49064101	49064301	+	760.083374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145164)	promoter-TSS (NM_001145164)	11.0	NM_001145164	100039796.0	Mm.482363	NM_001145164	ENSMUSG00000078921	Tgtp2	TGTP	T cell specific GTPase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-80420265-3	chr18	80420171	80420371	+	922.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026295, intron 12 of 12)	intron (NM_026295, intron 12 of 12)	49396.0	NM_026295	67655.0	Mm.312893	NM_026295	ENSMUSG00000033323	Ctdp1	4930563P03Rik|AW553592	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1	protein-coding	4.14810796721768	3.98782052889378	3.79341844317876	3.8756375151849	2.9563875930375	3.5438837758486	3.88847285952534	1.98837202070532	-1.02625929504262	0.0776510842307472	0.423994709617948
Merged-chr8-116580835-2	chr8	116580735	116580935	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029441, intron 5 of 6)	intron (NM_029441, intron 5 of 6)	75820.0	NM_029297	75465.0	Mm.23114	NM_029297	ENSMUSG00000034467	Dynlrb2	1700009A04Rik|DNLC2B|Dncl2b	dynein light chain roadblock-type 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-11240704-3	chr19	11240600	11240800	+	853.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045317, intron 1 of 2)	Lx|LINE|L1	25451.0	NM_007641	12482.0	Mm.4046	NM_007641	ENSMUSG00000024673	Ms4a1	AA960661|Cd20|Ly-44|Ms4a2	membrane-spanning 4-domains, subfamily A, member 1	protein-coding	2.6140783637353	1.53911005770962	2.41318258248996	1.19852236128786	2.49284065353521	2.13545781100218	1.23347255852674	2.90695248546382	0.55105818934725	0.605383651505316	0.974576632476413
Merged-chr2-174463643-2	chr2	174463543	174463743	+	958.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025983, intron 1 of 2)	intron (NM_025983, intron 1 of 2)	458.0	NM_025983	67126.0	Mm.20841	NM_025983	ENSMUSG00000016252	Atp5e	2410043G19Rik|ATPE|AV000645|Atp5f1e	ATP synthase, H+ transporting, mitochondrial F1 complex, epsilon subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-73964980-3	chr12	73964931	73965131	+	853.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178392, intron 1 of 9)	intron (NM_178392, intron 1 of 9)	501.0	NM_178392	75627.0	Mm.25937	NM_178392	ENSMUSG00000021113	Snapc1	2700033G17Rik|AU015787	small nuclear RNA activating complex, polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-108905284-2	chr10	108905184	108905384	+	584.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009306, intron 1 of 10)	Lx4A|LINE|L1	103827.0	NM_001358506	20979.0	Mm.289702	NM_009306	ENSMUSG00000035864	Syt1	AW124717|G630098F17Rik|SytI	synaptotagmin I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-53166648-2	chr18	53166540	53166740	+	683.0	f0_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-9652.0	NM_001357463	67804.0	Mm.252171	NM_026386	ENSMUSG00000034484	Snx2	0610030A03Rik	sorting nexin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-43506445-2	chr1	43506345	43506545	+	546.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010879, intron 1 of 4)	intron (NM_010879, intron 1 of 4)	60694.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-72498106-2	chr2	72498006	72498206	+	664.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	21887.0	NM_025866	66953.0	Mm.270676	NM_025866	ENSMUSG00000055612	Cdca7	2310021G01Rik|AU044109|JPO1	cell division cycle associated 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-7955445-4	chr10	7955350	7955550	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138667, intron 1 of 6)	CpG	673.0	NM_138667	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-58633690-2	chr7	58633590	58633790	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24512.0	NM_009728	11982.0	Mm.135129	NM_009728	ENSMUSG00000025324	Atp10a	Atp10c|pfatp	ATPase, class V, type 10A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-74233255-2	chr4	74233155	74233355	+	578.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9242.0	NM_001172095	76804.0	Mm.209059	NM_144787	ENSMUSG00000028397	Kdm4c	2410141F18Rik|AA517467|Gasc1|Jmjd2c	lysine (K)-specific demethylase 4C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-96944886-2	chr11	96944786	96944986	+	881.714294	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134021)	promoter-TSS (NM_134021)	740.0	NR_003293	319371.0	Mm.436865	NR_003293	ENSMUSG00000078700	D030028A08Rik	-	RIKEN cDNA D030028A08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133390787-3	chr4	133390650	133390850	+	781.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016981, intron 1 of 11)	MIR3|SINE|MIR	20974.0	NR_039582	100628620.0		NR_039582	ENSMUSG00000092745	Mir5122	mmu-mir-5122|mu-mir-5122	microRNA 5122	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-58446821-4	chr10	58446715	58446915	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011240)	promoter-TSS (NM_011240)	-37.0	NM_011240	19386.0	Mm.431695	NM_011240	ENSMUSG00000003226	Ranbp2	A430087B05Rik|AI256741|NUP358	RAN binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46509247-3	chr19	46509098	46509298	+	835.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053100, intron 1 of 5)	intron (NM_053100, intron 1 of 5)	7550.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-8316302-1	chr12	8316202	8316402	+	732.0	f1_c57bl6.idr	intron (NM_021429, intron 1 of 6)	intron (NM_021429, intron 1 of 6)	2869.0	NM_021429	58240.0	Mm.309954	NM_021429	ENSMUSG00000020605	Hs1bp3	-	HCLS1 binding protein 3	protein-coding	-0.778082596538266	-1.01822870734921	-1.02945680142399	-1.03348344941628	-0.568232152040811	-1.01579553252409	-1.02691500703827	-1.0331489920742	0.87297571659195	0.788523652777195	1
Merged-chr10-96201483-2	chr10	96201383	96201583	+	640.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24724.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-4236396-2	chr7	4236296	4236496	+	616.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1358.0	NM_001081239	232801.0	Mm.258061	NM_001081239	ENSMUSG00000070873	Lilra5	E030017K20|EG232801|Gm4878|Lilrc1	leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 5	protein-coding	-1.06997269762433	-1.30473905204845	-1.3145270772132	-1.32256725251374	-1.06385251204029	-1.30261794616352	-1.3123112828633	-1.32112806497905	0.0394047164033882	0.991001358494878	1
Merged-chr19-9107585-2	chr19	9107460	9107660	+	681.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19604.0	NM_011681	22287.0	Mm.2258	NM_011681	ENSMUSG00000024653	Scgb1a1	CC10|CC16|CCSP|PCB-BP|UG|UGB|Utg	secretoglobin, family 1A, member 1 (uteroglobin)	protein-coding	-1.14851531356494	-1.26444994169594	-1.27461838696925	-1.28297105067364	-1.29219799216433	-1.26224639718654	-1.27231647384535	-0.855628795262999	1.28980919109289	0.704711951929552	1
Merged-chr9-86478541-4	chr9	86478414	86478614	+	962.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177208, intron 1 of 38)	intron (NM_177208, intron 1 of 38)	11360.0	NM_177208	320615.0	Mm.245500	NM_177208	ENSMUSG00000034973	Dopey1	B130005I07Rik|BC035275|C130028L17|D9Ertd809e	dopey family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-29981096-2	chr14	29980996	29981196	+	723.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027493, intron 1 of 12)	B3A|SINE|B2	2759.0	NM_027493	56249.0	Mm.215110	NM_027493	ENSMUSG00000015971	Actr8	5730542K05Rik|ARP8	ARP8 actin-related protein 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-36940861-3	chr16	36940743	36940943	+	875.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008225, intron 3 of 13)	intron (NM_008225, intron 3 of 13)	5860.0	NM_008225	15163.0	Mm.4091	NM_008225	ENSMUSG00000022831	Hcls1	AW213261|HS1	hematopoietic cell specific Lyn substrate 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-97906091-3	chr7	97906000	97906200	+	859.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357362, intron 14 of 15)	ORR1D2|LTR|ERVL-MaLR	-13858.0	NM_177696	233537.0	Mm.375772	NM_177696	ENSMUSG00000035582	Gdpd4	4921513O04	glycerophosphodiester phosphodiesterase domain containing 4	protein-coding	3.74472473852064	4.57453913683397	4.84909793382634	3.94413126040545	1.94493203315156	1.68232800424963	2.88729774676448	2.91457377047096	-2.87012284282274	5.00822212256375e-06	0.000253895700112056
Merged-chr2-12228500-4	chr2	12228405	12228605	+	760.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001309, intron 13 of 29)	intron (NM_001001309, intron 13 of 29)	-72741.0	NR_040353	338535.0	Mm.483275	NR_040353	ENSMUSG00000086843	E030013I19Rik	-	RIKEN cDNA E030013I19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166185603-4	chr2	166185500	166185700	+	882.7374880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29917.0	NM_028072	72043.0	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	3.63079000212552	3.3272624341607	3.65283357731953	3.47946141134952	3.65927181149517	3.35165371334582	3.68013653040419	3.57180317392275	0.0661823217986528	0.896634183380521	0.998431161219273
Merged-chr7-117490881-4	chr7	117490776	117490976	+	882.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175645, intron 2 of 11)	intron (NM_175645, intron 2 of 11)	109897.0	NM_175645	233781.0	Mm.461427	NM_175645	ENSMUSG00000030657	Xylt1	8030490L12	xylosyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-12800394-2	chr15	12800294	12800494	+	573.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	24263.0	NM_029998	77877.0	Mm.207311	NM_029998	ENSMUSG00000022195	6030458C11Rik	-	RIKEN cDNA 6030458C11 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-105801356-4	chr3	105801253	105801453	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145541)	promoter-TSS (NM_145541)	28.0	NM_145541	109905.0	Mm.101922	NM_145541	ENSMUSG00000068798	Rap1a	AI848598|G-22K|Krev-1|Rap1	RAS-related protein 1a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67483611-4	chr10	67483518	67483718	+	907.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54251.0	NM_010118	13654.0	Mm.290421	NM_010118	ENSMUSG00000037868	Egr2	Egr-2|Krox-20|Krox20|NGF1-B|Zfp-25|Zfp-6	early growth response 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129065910-5	chr4	129065790	129065990	+	864.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029219, intron 1 of 8)	PB1D10|SINE|Alu	7619.0	NM_029219	75234.0	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-37048158-2	chr17	37048058	37048258	+	752.616699	f1_balb.idr|f1_c57bl6.idr	intron (NM_019439, intron 3 of 22)	intron (NM_019439, intron 3 of 22)	2192.0	NM_019439	54393.0	Mm.32191	NM_019439	ENSMUSG00000024462	Gabbr1	GABAB1|GABAbR1|bM573K1.1	gamma-aminobutyric acid (GABA) B receptor, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-97544789-2	chr13	97544689	97544889	+	639.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-15211.0	NR_046157	328314.0	Mm.138047	NR_046157	ENSMUSG00000110235	Gm5086	B230311A21|EG328314	predicted gene 5086	ncRNA	0.186599865928275	0.416455921606324	-0.0547330116246171	-0.058259619229322	0.192877769138241	0.425564491578989	-0.053722743656911	-0.0576443581874416	0.0401679588089307	0.98516215522826	1
Merged-chr13-23704350-2	chr13	23704249	23704449	+	723.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010424, exon 6 of 6)	3' UTR (NM_010424, exon 6 of 6)	-5891.0	NM_178208	319155.0	Mm.261662	NM_178208	ENSMUSG00000060678	Hist1h4c	-	histone cluster 1, H4c	protein-coding	0.149936660260342	-0.190036083280083	-0.194186802448059	0.305822987562316	0.25159977814691	-0.189097945292251	-0.193272888862913	-0.196820315700701	-0.883945861479709	0.71507347361742	1
Merged-chr3-145649645-8	chr3	145649592	145649792	+	962.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010516, intron 1 of 4)	CpG	293.0	NM_010516	16007.0	Mm.1231	NM_010516	ENSMUSG00000028195	Cyr61	AI325051|CCN1|Igfbp10	cysteine rich protein 61	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-55191367-4	chr15	55191288	55191488	+	885.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037937, intron 4 of 8)	MTC|LTR|ERVL-MaLR	57952.0	NM_001037937	97998.0	Mm.295397	NM_145470	ENSMUSG00000022419	Deptor	Depdc6	DEP domain containing MTOR-interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-137114650-2	chr5	137114550	137114750	+	776.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_201373, exon 3 of 3)	exon (NM_201373, exon 3 of 3)	1557.0	NM_201373	384309.0	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	-1.84354474832578	-1.81325489144778	-1.53416061964661	-1.82993901100912	-1.8414184563789	-1.81126990231468	-1.82034119297928	-1.82859217979378	-1.52252619601533	0.665276690233728	1
Merged-chr8-3712499-2	chr8	3712399	3712599	+	651.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8152.0	NM_029465	75863.0	Mm.109183	NM_029465	ENSMUSG00000074491	Clec4g	4930572L20Rik	C-type lectin domain family 4, member g	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-120469107-2	chr1	120469009	120469209	+	610.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35915.0	NM_010766	17167.0	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	0.0493992544795473	0.54189281117054	-0.0859064721615614	-0.0900331048449103	0.0536533494348495	0.553127264162033	-0.0847276532047559	-0.0893118442418122	0.0397771334702483	0.985300056049408	1
Merged-chr18-60808520-8	chr18	60808361	60808561	+	921.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042605, intron 3 of 8)	intron (NM_001042605, intron 3 of 8)	-3615.0	NR_039567	100628611.0		NR_039567	ENSMUSG00000093327	Mir5107	mir-5107|mmu-mir-5107|mu-mir-5107	microRNA 5107	ncRNA	1.81817844002797	1.5729634406835	1.99438491706064	3.11779569837836	0.967149469554161	1.06413520157633	1.87275254259347	1.65447744216063	-2.18351816051613	0.0513998741891249	0.331037907307534
Merged-chr12-52120467-4	chr12	52120367	52120567	+	967.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029760, intron 3 of 10)	intron (NM_029760, intron 3 of 10)	22721.0	NM_029760	76826.0	Mm.244781	NM_029760	ENSMUSG00000035142	Nubpl	2410170E07Rik	nucleotide binding protein-like	protein-coding	1.58745099367359	2.85428862671176	2.75727432594439	2.46889603993482	1.79779284208174	2.52174085040968	3.25617730092038	2.69271752426534	0.340267801556184	0.685338418665891	0.996533206832645
Merged-chr5-141093762-2	chr5	141093662	141093862	+	652.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-93166.0	NM_175362	108723.0	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-119897766-1	chr6	119897666	119897866	+	558.0	f0_balb.idr	Intergenic	Intergenic	-4932.0	NM_001166382	19365.0	Mm.149	NM_011236	ENSMUSG00000030166	Rad52	Rad52yh	RAD52 homolog, DNA repair protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-152112106-4	chr2	152111990	152112190	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_029688)	TTS (NM_029688)	6566.0	NM_029688	76650.0	Mm.218639	NM_029688	ENSMUSG00000032802	Srxn1	1700127B04Rik|AI854065|AW488194|Npn3|Srx|Srx1|TX01	sulfiredoxin 1 homolog (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67712007-4	chr10	67711894	67712094	+	899.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-140035.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-157019875-4	chr1	157019902	157020102	+	921.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-80376.0	NM_001357391	78255.0	Mm.28376	NM_023884	ENSMUSG00000026594	Ralgps2	1810020P17Rik|2210408F11Rik|4921528G01Rik|9130014M22Rik|AU043409|AW046161	Ral GEF with PH domain and SH3 binding motif 2	protein-coding	3.29503551677649	3.36685334280178	3.77125027643657	1.54176599460939	2.59136679725104	2.44882781297955	4.25135439357872	3.62536412255599	0.357006170283769	0.639578585437663	0.982599433509505
Merged-chr4-55526694-2	chr4	55526518	55526718	+	682.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_010637)	TTS (NM_010637)	5857.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	-2.18308165884198	-2.15547475440471	-2.16382331017202	-2.1706810624505	-2.18114370519566	-2.15366558754311	-2.03057248461154	-2.16945352807143	0.759018020146679	0.829933115115583	1
Merged-chr12-69985760-4	chr12	69985664	69985864	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022028, intron 1 of 4)	intron (NM_022028, intron 1 of 4)	1238.0	NM_022028	64010.0	Mm.390480	NM_022028	ENSMUSG00000021067	Sav1	1700040G09Rik|Salv|Sav|WW45|Wwp3|Wwp4	salvador family WW domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-4184703-2	chr11	4184603	4184803	+	974.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	-2130.0	NM_134023	103724.0	Mm.28140	NM_134023	ENSMUSG00000034412	Tbc1d10a	AI447804|EPI64|Tbc1d10|mFLJ00288	TBC1 domain family, member 10a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-64234592-4	chr15	64234497	64234697	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 3 of 28)	intron (NM_001276461, intron 3 of 28)	78076.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-18617631-4	chr19	18617504	18617704	+	903.5166630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017375, intron 1 of 9)	MIRb|SINE|MIR	14209.0	NM_017375	20409.0	Mm.172222	NM_017375	ENSMUSG00000024725	Ostf1	C78236|SH3P2|Sh3d3	osteoclast stimulating factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-85131999-4	chr15	85131913	85132113	+	966.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080470)	promoter-TSS (NM_080470)	-56.0	NM_080470	140557.0	Mm.182737	NM_080470	ENSMUSG00000022432	Smc1b	SMC-1B|SMC1beta|Smc1l2	structural maintenance of chromosomes 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129830446-4	chr4	129830345	129830545	+	850.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164745, intron 1 of 5)	intron (NM_001164745, intron 1 of 5)	9737.0	NM_001164745	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	2.57163721637471	3.69408018516327	2.93686743651891	4.55023811704364	3.09766941745047	2.63719230501309	2.96143247358496	2.45302684276075	-1.36589215007256	0.0449132070646559	0.304675080114064
Merged-chr9-121928676-4	chr9	121928591	121928791	+	915.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4c|LINE|L1	-8584.0	NR_033553	69430.0	Mm.482910	NR_033553	ENSMUSG00000043773	1700048O20Rik	1700022O21Rik	RIKEN cDNA 1700048O20 gene	ncRNA	1.37117478787596	0.973940621754705	0.958580150320157	1.56468405292249	1.59727222007543	1.54773615903147	1.74007914613587	1.78159505383781	1.56702890370126	0.204055127320794	0.69167790036705
Merged-chr10-69186972-1	chr10	69186872	69187072	+	541.0	f1_c57bl6.idr	Intergenic	Intergenic	-21580.0	NM_001252636	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-45600708-3	chr13	45600606	45600806	+	959.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199304, intron 5 of 6)	ORR1F|LTR|ERVL-MaLR	93262.0	NM_025508	66355.0	Mm.290802	NM_025508	ENSMUSG00000000253	Gmpr	2310004P21Rik|AV028449|GMPR 1	guanosine monophosphate reductase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-32412148-2	chr17	32412048	32412248	+	733.25	f1_balb.idr|f1_c57bl6.idr	TTS (NM_021319)	TTS (NM_021319)	-8566.0	NR_153797	320484.0	Mm.122284	NM_178785	ENSMUSG00000052142	Rasal3	A430107D22Rik	RAS protein activator like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117164692-2	chr11	117164592	117164792	+	646.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34969.0	NM_001113486	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-94413640-2	chr11	94413540	94413740	+	633.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009783, intron 33 of 35)	intron (NM_009783, intron 33 of 35)	-20664.0	NM_029600	76408.0	Mm.23942	NM_029600	ENSMUSG00000020865	Abcc3	1700019L09Rik|ABC31|MLP2|MOAT-D|MRP3	ATP-binding cassette, sub-family C (CFTR/MRP), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-51083946-1	chr19	51083846	51084046	+	565.0	f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-405300.0	NM_001290356	58178.0	Mm.313672	NM_021377	ENSMUSG00000043531	Sorcs1	Sorcs|mSorCS	sortilin-related VPS10 domain containing receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-41961709-1	chr17	41961609	41961809	+	601.0	f1_c57bl6.idr	Intergenic	Intergenic	-354238.0	NM_028474	627626.0	Mm.390999	NM_028474	ENSMUSG00000042256	Ptchd4	3110082D06Rik|Gm321	patched domain containing 4	protein-coding	-0.434691175324833	-0.699932736519153	-0.703529885688884	-0.706307007162404	-0.710234057796803	-0.699122265694754	-0.702736276272173	0.0406309732349509	1.68098490462203	0.564350350897904	1
Merged-chr10-80033734-3	chr10	80033645	80033845	+	927.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 1 of 4)	intron (NR_038088, intron 1 of 4)	5914.0	NM_025554	66420.0	Mm.18579	NM_025554	ENSMUSG00000004667	Polr2e	2410021N14Rik|25kDa|AW208866|RPB5|XAP4	polymerase (RNA) II (DNA directed) polypeptide E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96734861-2	chr3	96734761	96734961	+	978.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026406, intron 1 of 8)	intron (NM_026406, intron 1 of 8)	7250.0	NM_026406	67845.0	Mm.386792	NM_026406	ENSMUSG00000028098	Rnf115	2610028E05Rik|AU042696|Zfp364	ring finger protein 115	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127590872-2	chr7	127590772	127590972	+	672.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360883, intron 4 of 18)	intron (NM_001360883, intron 4 of 18)	1947.0	NM_001360883	233900.0	Mm.41122	NM_172281	ENSMUSG00000030816	Rnf40	AI848422|BRE1-B|mKIAA0661	ring finger protein 40	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-115850160-4	chr4	115850059	115850259	+	979.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355174, intron 2 of 11)	intron (NM_001355174, intron 2 of 11)	10961.0	NM_001355174	17346.0	Mm.209327	NM_021461	ENSMUSG00000028708	Mknk1	2410048M24Rik|Mnk1	MAP kinase-interacting serine/threonine kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-55839349-4	chr16	55839246	55839446	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030612)	promoter-TSS (NM_030612)	-705.0	NM_001159395	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4908950-2	chr16	4908850	4909050	+	985.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357062, intron 2 of 17)	Lx5c|LINE|L1	22850.0	NM_001357061	17237.0	Mm.291326	NM_029657	ENSMUSG00000022517	Mgrn1	2610042J20Rik|mKIAA0544|md|nc	mahogunin, ring finger 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-49467993-4	chr7	49467938	49468138	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175272, intron 10 of 37)	intron (NM_175272, intron 10 of 37)	168797.0	NM_001005232	13172.0	Mm.307176	NM_001005232	ENSMUSG00000030507	Dbx1	AI426026|Dbx	developing brain homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-136717738-3	chr6	136717674	136717874	+	932.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145067, intron 18 of 25)	intron (NM_145067, intron 18 of 25)	-55881.0	NM_025806	66857.0	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	1.74881503043473	1.64557855292736	2.39473794195184	2.0626627353256	1.33514849137254	1.45593135617808	2.03031148073528	1.96742643063002	-0.757602553377173	0.457232061636627	0.919419599248534
Merged-chr1-138835550-4	chr1	138835443	138835643	+	896.474976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025565, intron 3 of 4)	intron (NM_001025565, intron 3 of 4)	6901.0	NM_001042577	16876.0	Mm.250732	NM_010714	ENSMUSG00000019230	Lhx9	3110009O07Rik|BB104635|LH2B	LIM homeobox protein 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-36515328-4	chr5	36515218	36515418	+	993.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133910, intron 7 of 13)	intron (NM_133910, intron 7 of 13)	15305.0	NM_001113364	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	3.13828112355411	3.05109577467663	3.79861501993854	3.32840126325578	4.63773973648681	5.01531218692204	4.63641307591605	4.7397212263963	1.88964558645708	1.55716998678883e-05	0.000662307134474448
Merged-chr1-33916662-6	chr1	33916491	33916691	+	785.444458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276764, intron 2 of 102)	ORR1D1|LTR|ERVL-MaLR	8366.0	NM_001276764	13518.0	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-33503682-3	chr17	33503588	33503788	+	899.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20397.0	NR_137628	224697.0	Mm.29304	NM_172619	ENSMUSG00000024299	Adamts10	9430006O18|AW045948|Adam-ts10|Adamts-10|Znmp	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-23953857-2	chr16	23953757	23953957	+	968.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23063.0	NM_001008230	224055.0	Mm.39248	NM_001008230	ENSMUSG00000047531	Rtp2	Gm605	receptor transporter protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-76371019-4	chr12	76370921	76371121	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178744, intron 1 of 1)	CpG-3289	755.0	NM_178744	268564.0	Mm.77065	NM_178744	ENSMUSG00000033454	Zbtb1	9430077A12|AI256369|Bsg2|C430003J21Rik	zinc finger and BTB domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-55054905-1	chr1	55054805	55055005	+	543.0	f1_c57bl6.idr	intron (NM_026424, intron 1 of 3)	B3A|SINE|B2	2135.0	NM_001039710	67876.0	Mm.281019	NM_026424	ENSMUSG00000025981	Coq10b	1500041J02Rik|1700030I21Rik|9530077A17Rik|AV002237|AW742641	coenzyme Q10B	protein-coding	2.90077735339192	2.20360619192973	3.3181356745953	1.24718639456464	1.64566720603279	2.05134232418121	2.4122417753939	1.91464125570636	-1.29413538625399	0.172404595303428	0.640342426440101
Merged-chr19-7040095-4	chr19	7039991	7040191	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016737)	promoter-TSS (NM_016737)	-65.0	NM_016737	20867.0	Mm.258633	NM_016737	ENSMUSG00000024966	Stip1	Hop|Sti1|p60	stress-induced phosphoprotein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-108834362-7	chr4	108834275	108834475	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356361)	promoter-TSS (NM_001356361)	-73.0	NM_001356361	70533.0	Mm.379178	NM_027453	ENSMUSG00000028568	Btf3l4	4632412E09Rik|5730434I03Rik|AI316863|AU022207|AW552446	basic transcription factor 3-like 4	protein-coding	-0.359249722838447	-0.340401657337169	-0.137305912667404	-0.351258947488048	-0.183184989044023	-0.339035678627127	0.795013357104707	-0.350425082528853	3.14010408048851	0.180004624363102	1
Merged-chr4-147426145-2	chr4	147426045	147426245	+	571.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039209, intron 1 of 2)	intron (NM_001039209, intron 1 of 2)	-127132.0	NM_001014397	433804.0	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154	zinc finger protein 985	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-19901288-4	chr4	19901189	19901389	+	978.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175406, intron 2 of 7)	intron (NM_175406, intron 2 of 7)	21277.0	NM_175406	242341.0	Mm.19298	NM_175406	ENSMUSG00000028238	Atp6v0d2	1620401A02Rik|AI324824|V-ATPase	ATPase, H+ transporting, lysosomal V0 subunit D2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-25318555-3	chr17	25318458	25318658	+	832.288879	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053260)	promoter-TSS (NM_053260)	-96.0	NM_053260	114662.0	Mm.207082	NM_053260	ENSMUSG00000034039	Prss29	D19363|Isp2|mISP-2	protease, serine 29	protein-coding	2.09154135634035	1.9311698067267	2.31143251748333	2.70951548855951	4.22826504095173	3.39663266004062	3.68272207878407	4.48497752260491	2.83572607632062	1.22883093225059e-05	0.000548766012102083
Merged-chr12-111528171-2	chr12	111528071	111528271	+	694.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-9930.0	NM_178041	217869.0	Mm.271222	NM_173363	ENSMUSG00000021282	Eif5	2810011H21Rik|D12Ertd549e	eukaryotic translation initiation factor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-35167162-4	chr7	35167067	35167267	+	964.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	C-rich|Low_complexity|Low_complexity	-19218.0	NM_017394	53896.0	Mm.35567	NM_017394	ENSMUSG00000030495	Slc7a10	AL024237|Asc-1|D7Bwg0847e	solute carrier family 7 (cationic amino acid transporter, y+ system), member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-64951093-4	chr8	64950980	64951180	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163747, intron 1 of 4)	B3A|SINE|B2	3895.0	NM_028427	73067.0	Mm.294445	NM_028427	ENSMUSG00000025521	Tmem192	3110005G23Rik	transmembrane protein 192	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-8883305-2	chr10	8883205	8883405	+	863.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 1 of 19)	intron (NM_175155, intron 1 of 19)	2765.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-57230967-2	chr2	57230867	57231067	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6711.0	NM_001145820	14571.0	Mm.3711	NM_010274	ENSMUSG00000026827	Gpd2	AA408484|AI448216|AU021455|AW494132|GPDH|Gdm1|Gpd-m|Gpdh-m|TISP38	glycerol phosphate dehydrogenase 2, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127020667-2	chr7	127020567	127020767	+	794.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001102563, intron 1 of 3)	intron (NM_001102563, intron 1 of 3)	544.0	NM_001102563	69017.0	Mm.392047	NM_001102563	ENSMUSG00000045114	Prrt2	1500031I19Rik|AI195361|DSPB3	proline-rich transmembrane protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-106234197-3	chr9	106234105	106234305	+	970.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020559, intron 10 of 10)	intron (NM_020559, intron 10 of 10)	11607.0	NM_031178	81897.0	Mm.44889	NM_031178	ENSMUSG00000045322	Tlr9	-	toll-like receptor 9	protein-coding	2.01568536066803	1.91370446730204	2.45273059517887	2.48992599893805	2.64187717998633	1.41544123269888	2.34801893764341	3.34007536839151	0.801543608440553	0.370694544295035	0.863727598865104
Merged-chr13-28557401-1	chr13	28557301	28557501	+	723.0	f0_balb.idr	intron (NR_045053, intron 7 of 8)	ORR1E|LTR|ERVL-MaLR	153472.0	NR_105787	102466635.0		NR_105787	ENSMUSG00000099158	Mir6368	Gm27800|mmu-mir-6368	microRNA 6368	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-29692827-4	chr11	29692735	29692935	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_194053)	promoter-TSS (NM_194053)	-63.0	NM_194053	68585.0	Mm.192580	NM_024226	ENSMUSG00000020458	Rtn4	1110020G17Rik|AA407876|AA409940|AA960376|ASY|C130026I10Rik|NOGO|NSP-CL|NgA|Nogo-A|Nogo-B|Nogo-C|mKIAA0886|mKIAA4153	reticulon 4	protein-coding	8.34951745134818	8.65812417394221	8.59731341799035	8.68880551658687	8.58839663756826	8.58512259249856	8.47917242489453	8.43938187472863	-0.0533522714441181	0.640429052423977	0.982599433509505
Merged-chr9-65598052-2	chr9	65597952	65598152	+	802.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MYSERV6-int|LTR|ERVK	10892.0	NM_001357527	208084.0	Mm.211032	NM_172453	ENSMUSG00000041064	Pif1	4631410M14|AI449441	PIF1 5'-to-3' DNA helicase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-14826580-4	chr4	14826488	14826688	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_152812)	promoter-TSS (NM_152812)	-1.0	NM_152812	72201.0	Mm.387724	NM_152812	ENSMUSG00000040550	Otud6b	2600013N14Rik|AU015433	OTU domain containing 6B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-43477146-4	chr15	43477041	43477241	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_046064)	promoter-TSS (NR_046064)	-88.0	NM_025736	66736.0	Mm.244512	NM_025736	ENSMUSG00000022337	Emc2	4921531G14Rik|AV060620|AW209495|Ttc35	ER membrane protein complex subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-16873853-1	chr12	16873753	16873953	+	754.0	f1_balb.idr	Intergenic	Intergenic	-21125.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	-0.413263772687439	-0.401848181152802	-0.405601987713925	-0.408488954909658	0.136996154493559	-0.401000166838483	0.0422711456680662	-0.247890522209902	3.52372046586607	0.157548306695533	1
Merged-chr1-85088550-1	chr1	85088450	85088650	+	573.0	f1_balb.idr	3' UTR (NM_213615, exon 7 of 7)	3' UTR (NM_213615, exon 7 of 7)	21303.0	NM_213615	381287.0	Mm.487565	NM_213615	ENSMUSG00000089844	A530032D15Rik	Gm1888	RIKEN cDNA A530032D15Rik gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-64736637-8	chr1	64736490	64736690	+	864.6823119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_022721, exon 2 of 2)	exon (NM_022721, exon 2 of 2)	1160.0	NM_001042659	14367.0	Mm.150813	NM_022721	ENSMUSG00000045005	Fzd5	5330434N09Rik|AI427138|Fz-5|Fz5|mFz5	frizzled class receptor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-95552795-2	chr10	95552695	95552895	+	785.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358996, intron 1 of 4)	intron (NM_001358996, intron 1 of 4)	6526.0	NR_037212	100526463.0		NR_037212	ENSMUSG00000092867	Mir3058	mir-3058|mmu-mir-3058	microRNA 3058	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-59755486-4	chr1	59755387	59755587	+	940.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-8792.0	NM_007561	12168.0	Mm.7106	NM_007561	ENSMUSG00000067336	Bmpr2	2610024H22Rik|AL117858|AW546137|BB189135|BMP-2|BMPR-2|BMPR-II|BMPRII|BRK-3|Gm20272	bone morphogenetic protein receptor, type II (serine/threonine kinase)	protein-coding	4.17403832758062	4.78821752223428	4.55175522263229	3.98869879738239	4.74982008056855	3.9675399667778	4.06516681127396	4.89071454119466	0.109951432076484	0.792791356983288	0.998431161219273
Merged-chr16-76407416-2	chr16	76407316	76407516	+	651.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33589.0	NM_001358238	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-90142835-2	chr16	90142735	90142935	+	961.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033476, exon 1 of 1)	non-coding (NR_033476, exon 1 of 1)	598.0	NR_033476	100038709.0	Mm.484070	NR_033476		Gm10789	-	predicted gene 10789	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-42156408-3	chr19	42156314	42156514	+	864.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	9025.0	NM_183195	277010.0	Mm.206250	NM_183195	ENSMUSG00000044345	Marveld1	AI504298|Mrvldc1	MARVEL (membrane-associating) domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-172341102-4	chr1	172341006	172341206	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039484)	promoter-TSS (NM_001039484)	-104.0	NM_001039484	16513.0	Mm.254563	NM_020269	ENSMUSG00000044708	Kcnj10	BIR10|BIRK-1|Kir1.2|Kir4.1	potassium inwardly-rectifying channel, subfamily J, member 10	protein-coding	4.21638539784243	4.1870165005185	3.4699599875234	4.28354066684265	5.05066484749588	3.51631287760769	3.69291797062278	4.9323627229987	0.533835576480432	0.278166053560198	0.781792858737504
Merged-chr7-80766217-4	chr7	80766097	80766297	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016721, intron 4 of 37)	intron (NM_016721, intron 4 of 37)	37134.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-59670799-4	chr1	59670702	59670902	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009460)	promoter-TSS (NM_009460)	32.0	NM_009460	22218.0	Mm.362118	NM_009460	ENSMUSG00000026021	Sumo1	GMP1|PIC1|SENTRIN|SMT3|SMT3H3|SMTP3|SUMO-1|Smt3C|Ubl1	small ubiquitin-like modifier 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-107470775-4	chr11	107470651	107470851	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145823)	promoter-TSS (NM_145823)	-31.0	NM_145823	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-21780440-5	chr13	21780298	21780498	+	878.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_020034, exon 1 of 1)	exon (NM_020034, exon 1 of 1)	227.0	NM_020034	56702.0	Mm.221314	NM_020034	ENSMUSG00000058773	Hist1h1b	H1.5|H1B|H1f5|H1s-3	histone cluster 1, H1b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-81133704-4	chr13	81133521	81133721	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 87 of 89)	intron (NM_054053, intron 87 of 89)	169547.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-155369717-4	chr2	155369617	155369817	+	914.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2c|LINE|L2	-12139.0	NM_178111	68728.0	Mm.293605	NM_178111	ENSMUSG00000038375	Trp53inp2	1110029F20Rik|Tp53inp2	transformation related protein 53 inducible nuclear protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-41408068-3	chr3	41407953	41408153	+	819.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	85146.0	NR_040385	78706.0	Mm.366094	NR_040385	ENSMUSG00000097639	Platr4	C430002E04Rik	pluripotency associated transcript 4	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-50880202-4	chr17	50880105	50880305	+	911.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028162, intron 13 of 21)	(CAAAAA)n|Simple_repeat|Simple_repeat	181524.0	NM_001297747	12228.0	Mm.392910	NM_009770	ENSMUSG00000022863	Btg3	ANA|tob5	B cell translocation gene 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41774257-4	chr19	41774152	41774352	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027667, intron 9 of 11)	intron (NM_027667, intron 9 of 11)	27291.0	NR_040320	100502871.0	Mm.394485	NR_040320		Gm19424	-	predicted gene, 19424	ncRNA	4.38910255684817	4.59005715381297	4.7227532960651	4.38005363782095	3.5187520377652	3.96157223639845	4.62494336730532	4.7796470379771	-0.272965079384671	0.519265200523595	0.947641799425091
Merged-chr2-84734014-4	chr2	84733919	84734119	+	965.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001005342)	promoter-TSS (NM_001005342)	-185.0	NM_001005342	241525.0	Mm.486398	NM_001005342	ENSMUSG00000034059	Ypel4	-	yippee like 4	protein-coding	1.50661535302682	1.55894474293696	1.36469432500471	1.58648111446426	0.969192002992986	1.70411626038555	1.51912359892677	1.59466166558654	-0.100914443474089	0.93161147161943	0.998431161219273
Merged-chr15-50854602-4	chr15	50854495	50854695	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_032000, intron 1 of 5)	intron (NM_032000, intron 1 of 5)	34454.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-87542143-4	chr6	87542058	87542258	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8899.0	NM_001286610	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-86822617-2	chr18	86822517	86822717	+	796.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17B|LTR|ERVK	110306.0	NM_001361145	12405.0	Mm.70775	NM_172633	ENSMUSG00000024647	Cbln2	6330593N19Rik|A730004O05	cerebellin 2 precursor protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-75168600-2	chr8	75168500	75168700	+	747.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45344.0	NM_029182	75141.0	Mm.179267	NM_029182	ENSMUSG00000034472	Rasd2	4930526B11Rik|AU045414|Rhes|TEM-2|TEM2	RASD family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-79254985-7	chr2	79254917	79255117	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010576)	promoter-TSS (NM_010576)	-409.0	NM_010576	16401.0	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-7085290-4	chr15	7085180	7085380	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44292.0	NM_001113386	16880.0	Mm.149720	NM_013584	ENSMUSG00000054263	Lifr	A230075M04Rik|AW061234|LIF	leukemia inhibitory factor receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-82754849-2	chr6	82754749	82754949	+	596.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013820, intron 2 of 17)	RSINE1|SINE|B4	19605.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-74689785-3	chr14	74689685	74689885	+	873.138855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172812, intron 2 of 2)	intron (NM_172812, intron 2 of 2)	-42512.0	NM_001285423	13885.0	Mm.38055	NM_016903	ENSMUSG00000021996	Esd	Es-10|Es10|FGH|sid478	esterase D/formylglutathione hydrolase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-130858163-4	chr7	130858065	130858265	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7559.0	NM_133942	101476.0	Mm.323554	NM_133942	ENSMUSG00000040268	Plekha1	AA960558|C920009D07Rik|TAPP1	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-34451479-3	chr12	34451376	34451576	+	724.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271386, intron 4 of 27)	intron (NM_001271386, intron 4 of 27)	77413.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-77688610-2	chr11	77688510	77688710	+	656.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001024205, intron 1 of 3)	intron (NM_001024205, intron 1 of 3)	2471.0	NM_001024205	68564.0	Mm.428996	NM_001024205	ENSMUSG00000037857	Nufip2	1110001M19Rik|9530056D24Rik|AI256692|AI461731|PIG1|mKIAA1321	nuclear fragile X mental retardation protein interacting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-24282678-4	chr16	24282576	24282776	+	994.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-110674.0	NM_178665	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-107069103-2	chr14	107069003	107069203	+	923.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-582583.0	NR_045938	73631.0	Mm.48862	NR_045938	ENSMUSG00000099794	1700128A07Rik	-	RIKEN cDNA 1700128A07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-34842465-2	chr18	34842365	34842565	+	718.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001204914, exon 2 of 8)	exon (NM_001204914, exon 2 of 8)	1876.0	NM_144865	225362.0	Mm.293588	NM_144865	ENSMUSG00000038555	Reep2	-	receptor accessory protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-113932235-4	chr9	113932130	113932330	+	986.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013699, intron 2 of 15)	intron (NM_013699, intron 2 of 15)	1296.0	NM_013699	22221.0	Mm.28052	NM_013699	ENSMUSG00000009741	Ubp1	Cp2b|LBP-1a|LBP-1b|NF2d9	upstream binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-115291261-2	chr6	115291161	115291361	+	544.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39056.0	NM_001356406	110595.0	Mm.255607	NM_080639	ENSMUSG00000030317	Timp4	Timp-4	tissue inhibitor of metalloproteinase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-145204441-4	chr5	145204322	145204522	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001167944)	promoter-TSS (NM_001167944)	-137.0	NM_001359187	22757.0	Mm.332842	NM_016683	ENSMUSG00000055991	Zkscan5	AI132486|AI326970|Zfp95|hKraba1	zinc finger with KRAB and SCAN domains 5	protein-coding	2.97985999370787	4.53896123533022	3.60580994434098	4.68693504064941	5.13263728241754	4.19306453513024	5.05896860507813	4.74718328880907	0.911471512914958	0.0504547690577093	0.327573765776189
Merged-chr1-76622034-2	chr1	76621934	76622134	+	769.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	112474.0	NR_105761	102465175.0		NR_105761	ENSMUSG00000098611	Mir6343	Gm27304|mmu-mir-6343	microRNA 6343	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-6064379-1	chr8	6064279	6064479	+	649.0	f1_balb.idr	Intergenic	Intergenic	-959092.0	NM_011388	20494.0	Mm.3500	NM_011388	ENSMUSG00000023073	Slc10a2	9130221J18Rik|AI605518|ASBT|IBAT|ISBT	solute carrier family 10, member 2	protein-coding	-1.31349849087795	-1.28274354783242	-1.29349452597086	-1.3023256995151	-1.3130151546297	-1.28041376602105	-0.694015972326031	-1.30074492367298	2.57396649482007	0.456321314346772	1
Merged-chr13-9094822-1	chr13	9094722	9094922	+	969.0	f0_balb.idr	intron (NM_172585, intron 1 of 17)	intron (NM_172585, intron 1 of 17)	941.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-6263454-1	chr6	6263354	6263554	+	760.0	f0_balb.idr	intron (NR_136905, intron 1 of 3)	MLT1B|LTR|ERVL-MaLR	14795.0	NR_136905	101056138.0	Mm.389085	NR_136904	ENSMUSG00000093482	Gm20619	-	predicted gene 20619	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-82100417-4	chr11	82100322	82100522	+	964.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1423.0	NM_011331	20293.0	Mm.867	NM_011331	ENSMUSG00000035352	Ccl12	MCP-5|Scya12	chemokine (C-C motif) ligand 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-102296215-4	chr15	102296107	102296307	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001014976)	promoter-TSS (NM_001014976)	-86.0	NM_001014976	105988.0	Mm.288324	NM_001014976	ENSMUSG00000058290	Espl1	AL024103|AU045071|Cerp|ESP1|PRCE|SSE	extra spindle pole bodies 1, separase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-97098819-2	chr15	97098719	97098919	+	707.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42863.0	NM_027052	69354.0	Mm.250980	NM_027052	ENSMUSG00000022464	Slc38a4	1110012E16Rik|1700012A18Rik|Ata3|mATA3|mNAT3	solute carrier family 38, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-47022706-4	chr7	47022606	47022806	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-14292.0	NM_175318	101685.0	Mm.155687	NM_175318	ENSMUSG00000049516	Spty2d1	5830435K17Rik|AI852426|P16H6	SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-66908813-4	chr10	66908727	66908927	+	818.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	11557.0	NR_138560	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-47032550-4	chr11	47032478	47032678	+	969.033325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011891, intron 6 of 7)	L2|LINE|L2	221779.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	-1.5061220274826	-1.47360709383584	-1.48343987814663	-1.49151681994238	-1.50383953926072	-1.47147628845725	-1.0170701920923	-1.49007105122263	2.15652851593596	0.535359572134045	1
Merged-chr13-99218640-3	chr13	99218536	99218736	+	976.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004149, intron 1 of 4)	intron (NM_001004149, intron 1 of 4)	33813.0	NM_001004149	238803.0	Mm.343207	NM_001004149	ENSMUSG00000050919	Zfp366	DC-SCRIPT|Znf366	zinc finger protein 366	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-45269154-4	chr9	45269055	45269255	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008348)	promoter-TSS (NM_008348)	-6.0	NM_001324486	16154.0	Mm.379327	NM_008348	ENSMUSG00000032089	Il10ra	AW553859|CDw210|CDw210a|IL-10R1|IL-10RA|Il10r|mIL-10R	interleukin 10 receptor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-59263994-2	chr10	59263894	59264094	+	708.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	42072.0	NM_172939	268301.0	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-100024750-2	chr12	100024650	100024850	+	745.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164426, intron 2 of 2)	intron (NM_001164426, intron 2 of 2)	60251.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-165658795-4	chr1	165658698	165658898	+	859.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038846, intron 3 of 5)	intron (NM_001038846, intron 3 of 5)	-24257.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99466547-2	chr7	99466441	99466641	+	560.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_028145, intron 1 of 6)	intron (NM_028145, intron 1 of 6)	537.0	NM_028145	72184.0	Mm.153585	NM_028145	ENSMUSG00000035298	Klhl35	2810406K13Rik	kelch-like 35	protein-coding	-0.953721354153451	-1.41025554057125	-1.42001056191158	-1.42802362688808	-1.44024889148474	-1.40814158675276	-1.41780223890411	-1.42658929208844	-2.11310844444413	0.543369238581748	1
Merged-chr16-76370249-4	chr16	76370152	76370352	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173440, intron 1 of 3)	intron (NM_173440, intron 1 of 3)	2797.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-118102444-2	chr7	118102345	118102545	+	932.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13702.0	NM_170669	267019.0	Mm.288212	NM_170669	ENSMUSG00000008683	Rps15a	A630031B11Rik	ribosomal protein S15A	protein-coding	-1.84456824087626	-1.81369603968745	-1.82303204814395	-1.83070092346192	-1.84240106943552	-1.51787681909439	-1.82091858046888	-1.82932819844659	1.64481029852639	0.639921510788462	1
Merged-chr3-134497994-2	chr3	134497894	134498094	+	590.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR1B-int|LTR|ERV1	-74359.0	NR_040600	75208.0	Mm.84580	NR_040600	ENSMUSG00000105765	4930539C22Rik	-	RIKEN cDNA 4930539C22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-47928679-2	chr19	47928579	47928779	+	554.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A2|LTR|ERVL-MaLR	-9033.0	NM_001163267	381229.0	Mm.300553	NM_001163267	ENSMUSG00000046585	Cfap58	Ccdc147|Gm969	cilia and flagella associated protein 58	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99225555-2	chr15	99225455	99225655	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010601, intron 1 of 14)	intron (NM_010601, intron 1 of 14)	579.0	NM_010601	16512.0	Mm.374793	NM_010601	ENSMUSG00000037579	Kcnh3	AU019351|C030044P22Rik|Elk2|Kv12.2|Melk2	potassium voltage-gated channel, subfamily H (eag-related), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128751123-4	chr2	128751050	128751250	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 5 of 18)	(A)n|Simple_repeat|Simple_repeat	52235.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	4.17432233428465	3.77097217953579	2.43127659309764	3.47683762766759	3.74756804925647	3.47024540115894	2.45238762475865	3.05505194467775	-0.519922552771239	0.415083895313485	0.896676881011847
Merged-chr6-39529228-2	chr6	39529128	39529328	+	605.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172477, intron 1 of 18)	intron (NM_172477, intron 1 of 18)	28606.0	NM_172477	209773.0	Mm.440021	NM_172477	ENSMUSG00000038456	Dennd2a	B930096L08Rik|C130031G22|mKIAA1277	DENN/MADD domain containing 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-19658585-6	chr2	19658521	19658721	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033642)	promoter-TSS (NR_033642)	559.0	NM_027715	71198.0	Mm.83981	NM_027715	ENSMUSG00000043415	Otud1	4933428L19Rik	OTU domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-100183320-4	chr13	100183213	100183413	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001126182, intron 5 of 15)	intron (NM_001126182, intron 5 of 15)	18809.0	NM_001126182	17948.0	Mm.89961	NM_010872	ENSMUSG00000078945	Naip2	Birc1b|Naip-rs6	NLR family, apoptosis inhibitory protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-142590607-4	chr3	142590457	142590657	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-4290.0	NM_010259	14468.0	Mm.457978	NM_010259	ENSMUSG00000040264	Gbp2b	Gbp-1|Gbp1|Mag-1|Mpa-1|Mpa1	guanylate binding protein 2b	protein-coding	2.5339448494076	1.79525906065035	2.53621034504034	2.21866699319314	2.36106595485091	2.75546498076926	3.09368173737736	2.58462870578608	0.880560377848348	0.260785882897344	0.76193504051867
Merged-chr2-160569710-4	chr2	160569578	160569778	+	959.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-76219.0	NM_009408	21969.0	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124498413-4	chr5	124498333	124498533	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021430, intron 6 of 6)	intron (NM_021430, intron 6 of 6)	15278.0	NM_029532	76167.0	Mm.156035	NM_029532	ENSMUSG00000029402	Snrnp35	6330548G22Rik	small nuclear ribonucleoprotein 35 (U11/U12)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-163601915-3	chr2	163601806	163602006	+	649.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181734)	promoter-TSS (NM_181734)	-408.0	NM_181734	76080.0	Mm.89828	NM_029512	ENSMUSG00000017679	Ttpal	3110080A02Rik|5830472M02Rik	tocopherol (alpha) transfer protein-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85279669-3	chr12	85279587	85279787	+	742.977783	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025421, intron 2 of 2)	(CAAAA)n|Simple_repeat|Simple_repeat	748.0	NM_025421	66204.0	Mm.311985	NM_025421	ENSMUSG00000008822	Acyp1	1110039O14Rik|AI325944	acylphosphatase 1, erythrocyte (common) type	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-55970548-2	chr16	55970448	55970648	+	754.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_024218, intron 5 of 5)	intron (NM_024218, intron 5 of 5)	-3256.0	NM_173026	271377.0	Mm.282814	NM_173026	ENSMUSG00000022601	Zbtb11	9230110G02Rik|ZNF-U69274	zinc finger and BTB domain containing 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-91052750-2	chr8	91052650	91052850	+	572.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001310530, exon 38 of 38)	3' UTR (NM_001310530, exon 38 of 38)	-17307.0	NM_001282001	19651.0	Mm.235580	NM_011250	ENSMUSG00000031666	Rbl2	PRB2|RBR-2|Rb2|p130	RB transcriptional corepressor like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-163640674-2	chr2	163640574	163640774	+	795.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_012032, intron 1 of 9)	intron (NM_012032, intron 1 of 9)	-4176.0	NR_028113	68386.0	Mm.410649	NR_028113	ENSMUSG00000058812	0610039K10Rik	-	RIKEN cDNA 0610039K10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-73358947-2	chr3	73358847	73359047	+	613.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_040547, intron 7 of 7)	RMER19B|LTR|ERVK	122704.0	NR_040547	74693.0	Mm.292227	NR_040547	ENSMUSG00000102362	4930509J09Rik	-	RIKEN cDNA 4930509J09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-57487435-2	chr10	57487335	57487535	+	693.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008297, intron 1 of 11)	intron (NM_008297, intron 1 of 11)	1050.0	NM_008297	15500.0	Mm.261395	NM_008297	ENSMUSG00000019878	Hsf2	AI661205	heat shock factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-10466675-3	chr10	10466591	10466791	+	792.722229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127353, intron 1 of 36)	LTR101_Mam|LTR|ERVL	5623.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	3.1600723149843	1.43335948988689	3.30198186476791	3.07995588847678	2.44866715368642	2.1817409006686	1.3983194580647	2.68372683570485	-1.27130891207494	0.159785620666312	0.619354256974287
Merged-chr13-113852450-2	chr13	113852350	113852550	+	682.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172595, intron 1 of 4)	intron (NM_172595, intron 1 of 4)	57942.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-60288808-4	chr2	60288705	60288905	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4321.0	NM_001290660	66205.0	Mm.227281	NM_025422	ENSMUSG00000060703	Cd302	1110055L24Rik|AI159627	CD302 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-63950985-2	chr10	63950885	63951085	+	789.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178678, intron 2 of 2)	intron (NM_178678, intron 2 of 2)	129930.0	NM_001164519	216033.0	Mm.444692	NM_177612	ENSMUSG00000060843	Ctnna3	4930429L08Rik|4933408A16|Catna3|Vr22	catenin (cadherin associated protein), alpha 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-93899832-1	chr13	93899732	93899932	+	776.0	f0_balb.idr	intron (NM_009712, intron 6 of 7)	MLT1A1|LTR|ERVL-MaLR	109055.0	NR_049198	100885837.0		NR_049198	ENSMUSG00000093480	Mir5624	Gm25075|mir-5624|mmu-mir-5624	microRNA 5624	ncRNA	-0.417784243931753	-0.405112911337092	-0.409265944338833	-0.246587561666572	-0.269465512228394	0.331988635911418	-0.408350106667686	-0.243775407331866	2.7088768679131	0.249774067952697	1
Merged-chr17-67383836-2	chr17	67383734	67383934	+	764.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29343.0	NM_001357625	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	2.34369945245917	2.11205361396329	1.15817971503885	2.05570636994036	0.864141314254305	0.936677650603029	0.914021143360845	1.63518797888587	-2.83166539567433	0.0311562638490663	0.243457282903795
Merged-chr1-185332123-4	chr1	185332037	185332237	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011794)	promoter-TSS (NM_011794)	-22.0	NM_011794	23827.0	Mm.227549	NM_011794	ENSMUSG00000026617	Bpnt1	BPntase	bisphosphate 3'-nucleotidase 1	protein-coding	5.36536976358315	4.88771694477448	5.64149972091506	5.16195917471232	5.9247701065302	6.21792108670498	5.51525178280731	5.67710858522222	0.63530959209805	0.0250004780360792	0.209392030242867
Merged-chr2-180171440-4	chr2	180171340	180171540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019822)	promoter-TSS (NM_019822)	-148.0	NM_019822	56436.0	Mm.316654	NM_019822	ENSMUSG00000039041	Adrm1	1110063P18Rik|2510006J17Rik|AA408205|ARM-1|AU043535|Arm1|Gp110|Rpn13	adhesion regulating molecule 1	protein-coding	5.94043789498383	6.50573662491876	6.84123372769565	6.62735467175385	6.60789353356324	6.97785060609541	7.22355833839063	6.30162169228136	0.326105483682962	0.176452818168844	0.646239594746578
Merged-chr6-76267498-2	chr6	76267398	76267598	+	722.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-974979.0	NR_155299	74342.0	Mm.292568	NM_028880	ENSMUSG00000060780	Lrrtm1	4632401D06Rik|AW125451	leucine rich repeat transmembrane neuronal 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-25485585-4	chr15	25485486	25485686	+	877.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	71394.0	NR_027376	432939.0	Mm.146555	NM_001013791		Gm5468	100040583|EG432939	predicted gene 5468	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-4252296-3	chr8	4252148	4252348	+	601.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133968)	promoter-TSS (NM_133968)	-854.0	NM_133968	102209.0	Mm.28452	NM_133968	ENSMUSG00000011837	Snapc2	0610007H10Rik|AU015675	small nuclear RNA activating complex, polypeptide 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-31813022-2	chr18	31812922	31813122	+	562.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028866, intron 1 of 21)	T-rich|Low_complexity|Low_complexity	8965.0	NM_001170966	74320.0	Mm.277705	NM_028866	ENSMUSG00000024400	Wdr33	1110001N06Rik|2310011G05Rik|2810021O11Rik|8430413N20Rik|WDC146	WD repeat domain 33	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-78161133-2	chr11	78161033	78161233	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_009423, exon 5 of 7)	exon (NM_009423, exon 5 of 7)	4417.0	NM_009423	22032.0	Mm.390418	NM_009423	ENSMUSG00000017386	Traf4	A530032M13Rik|CART1|msp2	TNF receptor associated factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-76232427-1	chr16	76232327	76232527	+	916.0	f0_balb.idr	Intergenic	Intergenic	109814.0	NR_040575	78215.0	Mm.243885	NR_040575		4930578N18Rik	-	RIKEN cDNA 4930578N18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-83736820-4	chr8	83736710	83736910	+	939.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011925, intron 1 of 19)	intron (NM_011925, intron 1 of 19)	4501.0	NM_001163029	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-115635500-1	chr8	115635400	115635600	+	677.5	f0_balb.idr	Intergenic	Intergenic	71394.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-113805178-3	chr9	113805087	113805287	+	818.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286603, intron 1 of 4)	intron (NM_001286603, intron 1 of 4)	-7399.0	NM_001286601	76499.0	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-3516644-2	chr10	3516553	3516753	+	701.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-23626.0	NM_027391	70337.0	Mm.24153	NM_027391	ENSMUSG00000019762	Iyd	0610009A07Rik|AI265638|Dehal1	iodotyrosine deiodinase	protein-coding	1.56231716025904	1.38799047086688	2.03756565931991	1.76529399662275	1.57393710065646	1.39575375610776	2.05390136505232	1.98954221281326	0.225777224070283	0.829326003388938	0.998431161219273
Merged-chr11-55209414-2	chr11	55209314	55209514	+	564.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153139, intron 1 of 10)	intron (NM_153139, intron 1 of 10)	5074.0	NM_153139	215335.0	Mm.35732	NM_153139	ENSMUSG00000020261	Slc36a1	5830411H19Rik|AI839897|Pat1	solute carrier family 36 (proton/amino acid symporter), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191026270-4	chr1	191026174	191026374	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198025)	promoter-TSS (NM_198025)	-84.0	NM_198025	226844.0	Mm.134053	NM_198025	ENSMUSG00000066595	Flvcr1	9630055N22Rik|FLVCR|Mfsd7b	feline leukemia virus subgroup C cellular receptor 1	protein-coding	6.70061457639547	6.38118449087232	6.53916722145743	6.58928916688648	6.38683624923384	7.07329719366816	6.91450768413394	6.3941189160151	0.167045268440566	0.429791877276716	0.904095509792853
Merged-chr8-85059340-2	chr8	85059208	85059408	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026791)	promoter-TSS (NM_026791)	-811.0	NM_026791	68628.0	Mm.374815	NM_026791	ENSMUSG00000008167	Fbxw9	1110017H11Rik|Fbw9	F-box and WD-40 domain protein 9	protein-coding	0.287324279290223	0.156304139604032	0.149534420022774	0.802665724349965	0.424325704701971	0.157825860106554	0.957652893440304	0.145207054468205	0.535240843204719	0.787516724558809	1
Merged-chr9-107678386-4	chr9	107678385	107678585	+	789.958313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008140, intron 1 of 8)	intron (NM_008140, intron 1 of 8)	1107.0	NM_008140	14685.0	Mm.284853	NM_008140	ENSMUSG00000034837	Gnat1	Gnat-1|Ird1|Ird2|Tralpha|irdc|irdr|transducin	guanine nucleotide binding protein, alpha transducing 1	protein-coding	1.04909026420017	1.87492919463375	0.718168981720151	0.704085419680627	0.683554774731673	1.38499042332673	2.07105408283619	1.12069357454226	0.750344791099209	0.602993874475188	0.973565005745828
Merged-chr3-142688687-3	chr3	142688593	142688793	+	723.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR1B-int|LTR|ERV1	-12355.0	NM_173763	229905.0	Mm.289643	NM_173763	ENSMUSG00000040213	Kyat3	Ccbl2|KATIII|Kat3	kynurenine aminotransferase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-15718085-2	chr6	15717985	15718185	+	797.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER20B|LTR|ERVK	-2576.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-64186038-4	chr15	64185963	64186163	+	965.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 5 of 28)	intron (NM_001276461, intron 5 of 28)	-125615.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	-0.623764677010023	0.414786613617209	-0.613346344035614	-0.617237239714038	-0.622788180854246	-0.376861492306096	-0.612239599835124	-0.616555314441361	-2.74930948094157	0.306902006299549	1
Merged-chr12-33317813-2	chr12	33317713	33317913	+	755.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033436, intron 1 of 7)	intron (NM_001033436, intron 1 of 7)	15298.0	NM_001033436	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-10476373-2	chr10	10476273	10476473	+	594.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4059.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134983703-4	chr6	134983601	134983801	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001109914, exon 2 of 2)	exon (NM_001109914, exon 2 of 2)	1700.0	NM_001109914	381823.0	Mm.296104	NM_001109914	ENSMUSG00000090698	Apold1	Gm1075	apolipoprotein L domain containing 1	protein-coding	5.43322971171805	5.13386306987492	4.97968151685306	4.77337095158732	5.4057478695877	4.75689329863962	4.65916344081332	5.35889505878847	-0.00993327636311567	0.976165592561643	0.998431161219273
Merged-chr6-145305782-3	chr6	145305682	145305882	+	845.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR17B_Mm|LTR|ERVK	55230.0	NR_045598	100039495.0	Mm.121014	NR_045598	ENSMUSG00000086013	Gm15706	-	predicted gene 15706	ncRNA	2.29131988464038	1.84985569340463	2.71737374256918	3.06625000038122	2.79164884069057	2.27905642920921	2.93388542191791	3.00817927051309	0.428268524994839	0.576318671182791	0.965286201225318
Merged-chr2-156178368-2	chr2	156178268	156178468	+	656.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133242, intron 2 of 16)	intron (NM_133242, intron 2 of 16)	1212.0	NM_001291115	170791.0	Mm.392436	NM_133242	ENSMUSG00000027620	Rbm39	1500012C14Rik|2310040E03Rik|B330012G18Rik|C79248|R75070|Rnpc2|caper	RNA binding motif protein 39	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131105948-1	chr1	131105848	131106048	+	549.0	f1_c57bl6.idr	Intergenic	Intergenic	-8105.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-23801777-1	chr17	23801677	23801877	+	770.0	f1_balb.idr	Intergenic	B3A|SINE|B2	-1410.0	NM_175229	75956.0	Mm.5222	NM_175229	ENSMUSG00000039218	Srrm2	5033413A03Rik|AA410130|SRm300|mKIAA0324	serine/arginine repetitive matrix 2	protein-coding	1.63196126562596	2.63090370008117	1.39688063999336	1.86451382631199	1.64562629768227	2.56804756387997	2.06944102976112	1.1340166232054	-0.0248176388073701	0.981470487803314	0.998431161219273
Merged-chr16-10429744-2	chr16	10429644	10429844	+	889.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013778, intron 1 of 6)	intron (NM_001013778, intron 1 of 6)	17618.0	NM_001359069	383103.0	Mm.325732	NM_001013778	ENSMUSG00000050908	Tvp23a	Fam18a	trans-golgi network vesicle protein 23A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-77110547-2	chr9	77110447	77110647	+	588.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027150, intron 7 of 7)	Lx7|LINE|L1	-64766.0	NR_136923	26944.0	Mm.23199	NM_012033	ENSMUSG00000032357	Tinag	AI452335|TIN-ag	tubulointerstitial nephritis antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-48834747-2	chr16	48834647	48834847	+	969.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE-int|LTR|ERVL-MaLR	-7805.0	NM_020509	57262.0	Mm.441868	NM_020509	ENSMUSG00000061100	Retnla	1810019L16Rik|Fizz-1|Fizz1|HIMF|RELM-alpha|RELMa|RELMalpha|Xcp2	resistin like alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-94392558-1	chr11	94392458	94392658	+	983.6666869999999	f0_c57.idr	intron (NM_029600, intron 1 of 30)	intron (NM_029600, intron 1 of 30)	418.0	NM_029600	76408.0	Mm.23942	NM_029600	ENSMUSG00000020865	Abcc3	1700019L09Rik|ABC31|MLP2|MOAT-D|MRP3	ATP-binding cassette, sub-family C (CFTR/MRP), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69904096-2	chr11	69903996	69904196	+	631.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001291119, exon 3 of 28)	exon (NM_001291119, exon 3 of 28)	2280.0	NM_001013414	216860.0	Mm.268347	NM_001013414	ENSMUSG00000047284	Neurl4	-	neuralized E3 ubiquitin protein ligase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-99560222-2	chr12	99560122	99560322	+	591.375	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-3619.0	NR_136760	102639404.0	Mm.396324	NR_136760	ENSMUSG00000097917	Gm26839	-	predicted gene, 26839	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5527467-3	chr17	5527388	5527588	+	756.416687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	RLTR10D2|LTR|ERVK	34888.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-7835659-1	chr10	7835559	7835759	+	793.0	f1_c57bl6.idr	promoter-TSS (NR_039563)	promoter-TSS (NR_039563)	-722.0	NR_039563	100628581.0		NR_039563	ENSMUSG00000093060	Mir5104	mir-5104|mmu-mir-5104|mu-mir-5104	microRNA 5104	ncRNA	1.99572059676575	1.50030263280177	1.74150995947356	3.96438744120382	2.33808088481326	4.04039970082662	3.41619328494289	3.51549566153037	1.10495194981682	0.198770926965828	0.682185809772063
Merged-chr3-90710221-4	chr3	90710127	90710327	+	927.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	-14506.0	NM_001281852	20202.0	Mm.2128	NM_009114	ENSMUSG00000056071	S100a9	60B8Ag|AW546964|BEE22|Cagb|GAGB|L1Ag|MRP14|p14	S100 calcium binding protein A9 (calgranulin B)	protein-coding	1.5583177558644	0.807555151971376	1.29441652731847	0.786392535015121	1.19926951247133	1.02536438374919	1.30534756535369	1.58012615958308	0.522294543354788	0.705096499876454	0.998431161219273
Merged-chr4-134289029-4	chr4	134288929	134289129	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1183.0	NM_146156	230809.0	Mm.22778	NM_146156	ENSMUSG00000050890	Pdik1l	BC027088|stk35l2	PDLIM1 interacting kinase 1 like	protein-coding	4.58299905490411	3.55579730787978	4.96895324143688	5.53640834018044	3.68619899564849	5.69274438032663	4.01386350219845	4.48892651959817	-0.171785372951782	0.736330928475685	0.998431161219273
Merged-chr5-150593841-7	chr5	150593723	150593923	+	973.3214109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133898, intron 1 of 4)	CpG	702.0	NM_133898	100637.0	Mm.279932	NM_133898	ENSMUSG00000041132	N4bp2l1	2410024N18Rik|AI428195|B230342M21Rik	NEDD4 binding protein 2-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132382515-4	chr4	132382407	132382607	+	999.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161797, intron 3 of 12)	intron (NM_001161797, intron 3 of 12)	-28821.0	NR_003270	399101.0	Mm.486919	NR_002904	ENSMUSG00000085241	Snhg3	Rnu17d|U17HG	small nucleolar RNA host gene 3	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-98870471-2	chr15	98870371	98870571	+	602.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033276, intron 1 of 54)	intron (NM_001033276, intron 1 of 54)	734.0	NM_001033276	381022.0	Mm.264889	NM_001033276	ENSMUSG00000048154	Kmt2d	ALR|BC032281|BC058659|C430014K11Rik|KMT2B|Mll2|Mll4	lysine (K)-specific methyltransferase 2D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-46742443-4	chr18	46742364	46742564	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026217)	promoter-TSS (NM_026217)	588.0	NM_009681	11777.0	Mm.312536	NM_009681	ENSMUSG00000024480	Ap3s1	-	adaptor-related protein complex 3, sigma 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-100226073-3	chr15	100225978	100226178	+	741.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-1781.0	NM_007497	11908.0	Mm.676	NM_007497	ENSMUSG00000023027	Atf1	-	activating transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-96633682-2	chr6	96633582	96633782	+	702.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_182808, intron 3 of 4)	(GA)n|Simple_repeat|Simple_repeat	426729.0	NM_177233	320701.0	Mm.131700	NM_177233	ENSMUSG00000046500	Fam19a4	C130034I18Rik|Fam19a4 Tafa-4|Tafa-4	family with sequence similarity 19, member A4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-108574078-2	chr6	108573986	108574186	+	770.75	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	49081.0	NR_040757	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	2.14267575067891	1.46253368758924	1.39779472093602	2.10558502816955	3.72455886766916	4.00131198379504	3.25365390062507	4.27062048799975	3.71410986325217	1.90731220127324e-06	0.000111447719760762
Merged-chr6-92941491-3	chr6	92941391	92941591	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015530, intron 1 of 2)	intron (NR_015530, intron 1 of 2)	909.0	NR_015530	330385.0	Mm.483472	NR_015530	ENSMUSG00000097462	9530026P05Rik	B430306B02	RIKEN cDNA 9530026P05 gene	ncRNA	2.57756147380708	3.19486755655567	1.99388350828734	2.79709047206154	1.99543084509218	2.08000113296679	1.82631116896619	1.56279920502939	-1.92328992352483	0.0270195334689619	0.220530858884765
Merged-chr2-85049357-2	chr2	85049257	85049457	+	726.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1103.0	NM_001081260	228140.0	Mm.23606	NM_001081260	ENSMUSG00000033955	Tnks1bp1	Tab182|mKIAA1741	tankyrase 1 binding protein 1	protein-coding	-0.393695853632059	-0.751181653761304	-0.754251884853322	-0.756614066174729	-0.20124806483922	-0.750488270562737	-0.753575544849141	-0.756201818088136	0.759966263124917	0.800583933387673	1
Merged-chr12-17681039-2	chr12	17680939	17681139	+	943.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9770.0	NM_001361645	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	-0.397018532543431	0.338216123545405	-0.210668797556483	-0.391690301827306	-0.249507164000882	-0.383373035787941	-0.206107038540446	-0.391129306633758	-1.80720271028588	0.448659673925357	1
Merged-chr8-95131459-1	chr8	95131359	95131559	+	610.0	f0_balb.idr	intron (NM_001145831, intron 3 of 21)	intron (NM_001145831, intron 3 of 21)	11081.0	NM_010631	16582.0	Mm.378951	NM_010631	ENSMUSG00000031788	Kifc3	AI325457|BB123200	kinesin family member C3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-84515710-3	chr12	84515635	84515835	+	889.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173756, intron 5 of 5)	intron (NM_173756, intron 5 of 5)	-54093.0	NM_007701	12677.0	Mm.4405	NM_007701	ENSMUSG00000021239	Vsx2	Chx10|Hox-10|Hox10|or	visual system homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-86421601-3	chr4	86421514	86421714	+	858.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029967, intron 25 of 27)	Lx8|LINE|L1	136689.0	NM_001081096	75811.0	Mm.56451	NM_001081096	ENSMUSG00000028492	Saxo1	4930500O09Rik|Fam154a	stabilizer of axonemal microtubules 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5424347-1	chr19	5424247	5424447	+	765.333313	f1_c57bl6.idr	promoter-TSS (NM_001256515)	promoter-TSS (NM_001256515)	632.0	NM_024176	66556.0	Mm.275446	NM_024176	ENSMUSG00000024914	Drap1	2310074H19Rik|NC2-alpha	Dr1 associated protein 1 (negative cofactor 2 alpha)	protein-coding	2.03952815278857	0.967897739064372	0.949189259722177	2.08834530195531	1.10701658106374	1.73386930383814	1.53206302892299	1.48270621672628	-0.517435570298337	0.681539052626236	0.995882295196263
Merged-chr18-65678583-3	chr18	65678505	65678705	+	848.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361052, intron 6 of 8)	intron (NM_001361052, intron 6 of 8)	-19663.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	-0.213082105157128	-0.364172358705325	-0.370029377556333	-0.374590239090219	-0.208362943252038	-0.362860382278931	-0.368732352068705	0.763932372135872	3.14105988838801	0.183576067369697	1
Merged-chr4-84360187-2	chr4	84360087	84360287	+	692.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172870, intron 4 of 5)	intron (NM_172870, intron 4 of 5)	314899.0	NM_172870	242509.0	Mm.190774	NM_172870	ENSMUSG00000028487	Bnc2	5031434M05Rik|8430420F16Rik	basonuclin 2	protein-coding	0.640906567068392	1.37939074535545	0.875003885059086	1.01436709557176	0.967078939599542	1.71928825755466	1.20485345251046	0.659162525996974	0.816998467383366	0.572413942142553	0.963911477197412
Merged-chr4-148088073-4	chr4	148087956	148088156	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001301281)	promoter-TSS (NM_001301281)	8.0	NM_009642	11610.0	Mm.46247	NM_009642	ENSMUSG00000029007	Agtrap	3300002E14Rik|AT1R|Atrap|D4Wsu124e	angiotensin II, type I receptor-associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30954095-2	chr7	30953995	30954195	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011680, intron 7 of 9)	intron (NM_011680, intron 7 of 9)	2708.0	NM_011680	22282.0	Mm.322453	NM_011680	ENSMUSG00000058239	Usf2	Usf-2|bHLHb12	upstream transcription factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167633459-2	chr2	167633359	167633559	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1454.0	NM_023230	66589.0	Mm.278783	NM_023230	ENSMUSG00000078923	Ube2v1	0610011J09Rik|AI256840|CROC-1|CROC1|D7Bwg1382e|UEV-1	ubiquitin-conjugating enzyme E2 variant 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128700924-3	chr2	128700826	128701026	+	822.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 1 of 18)	intron (NM_008587, intron 1 of 18)	2011.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-83607524-2	chr8	83607424	83607624	+	858.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018808)	promoter-TSS (NM_018808)	-651.0	NM_018808	81489.0	Mm.282092	NM_018808	ENSMUSG00000005483	Dnajb1	0610007I11Rik|DjB1|HSPF1|Hdj1|Hsp40	DnaJ heat shock protein family (Hsp40) member B1	protein-coding	1.56014507388771	1.11130115058673	1.83865097161277	2.29159148448203	1.42376016524682	1.1166564743683	2.38300291782371	2.22003578863058	0.328386143764474	0.77502174314551	0.998431161219273
Merged-chr13-30749225-4	chr13	30749133	30749333	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013674)	promoter-TSS (NM_013674)	0.0	NM_001347508	16364.0	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-3145792-2	chr11	3145692	3145892	+	1000.0	f0_balb.idr|f1_balb.idr	intron (NM_030207, intron 15 of 32)	intron (NM_030207, intron 15 of 32)	21771.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-40781378-3	chr4	40781280	40781480	+	834.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23495.0	NM_021535	74255.0	Mm.289929	NM_021535	ENSMUSG00000028409	Smu1	2600001O03Rik|2610203K23Rik|AB044414|AI845086|AW556129|Bwd	smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-49432545-4	chr17	49432442	49432642	+	890.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020042, intron 1 of 10)	intron (NM_020042, intron 1 of 10)	4178.0	NM_020042	56738.0	Mm.22256	NM_020042	ENSMUSG00000064120	Mocs1	3110045D15Rik|AI043170|AW536397	molybdenum cofactor synthesis 1	protein-coding	0.822204311532914	1.15392484675956	1.31674681999209	1.81351974083914	0.826714216213854	2.17739213727848	1.12423729619538	2.25335753931085	1.25305894780848	0.33495387204109	0.835388696663455
Merged-chr10-80017595-4	chr10	80017499	80017699	+	935.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347074, intron 1 of 22)	intron (NM_001347074, intron 1 of 22)	684.0	NM_001347074	70719.0	Mm.243954	NM_027521	ENSMUSG00000035697	Arhgap45	6330406L22Rik|AW539505|Ha-1|Hmha1	Rho GTPase activating protein 45	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-57077027-4	chr9	57076928	57077128	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_152107)	promoter-TSS (NR_152107)	652.0	NM_011378	20466.0	Mm.15755	NM_011378	ENSMUSG00000042557	Sin3a	AW553200|Sin3|mKIAA4126|mSin3A	transcriptional regulator, SIN3A (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-101617654-2	chr6	101617554	101617754	+	598.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-156595.0	NR_027989	207157.0	Mm.57632	NM_177579	ENSMUSG00000052236	Gm9871	0610005I04|EG207157	predicted gene 9871	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-8803664-2	chr19	8803564	8803764	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001098237, exon 2 of 2)	exon (NM_001098237, exon 2 of 2)	1134.0	NM_001098237	75291.0	Mm.23423	NM_133759	ENSMUSG00000071661	Zbtb3	4930563M09Rik	zinc finger and BTB domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-5512522-4	chr11	5512377	5512577	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER31B|LTR|ERV1	-8164.0	NM_013842	22433.0	Mm.469937	NM_013842	ENSMUSG00000020484	Xbp1	D11Ertd39e|TREB-5|TREB5|XBP-1	X-box binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3082678-2	chr4	3082619	3082819	+	589.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-89364.0	NM_001167534	100312470.0	Mm.480297	NM_001167534	ENSMUSG00000115072	Vmn1r2	Gm11776	vomeronasal 1 receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-91489072-4	chr6	91488966	91489166	+	945.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_028766)	TTS (NM_028766)	15315.0	NM_028766	74122.0	Mm.38801	NM_028766	ENSMUSG00000030095	Tmem43	1200015A22Rik|LUMA	transmembrane protein 43	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-76594551-2	chr17	76594451	76594651	+	692.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	733528.0	NR_033456	100043885.0	Mm.127562	NR_033456		Gm4710	-	predicted gene 4710	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-65771199-4	chr17	65771070	65771270	+	985.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133685, intron 1 of 6)	intron (NM_133685, intron 1 of 6)	1582.0	NM_133685	106572.0	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	3.07378834720693	3.90658936606695	3.33558325928646	3.14968165534227	3.64461041538008	2.36009473413097	3.4489667468659	3.81760828689897	0.0482834695894322	0.936190494533028	0.998431161219273
Merged-chr18-80702652-4	chr18	80702543	80702743	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198429, intron 1 of 9)	intron (NM_198429, intron 1 of 9)	5530.0	NM_001164111	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	4.9803535350683	5.4816543741833	3.85261881962163	5.84124460762873	5.75012352184398	6.13487772808104	6.0718980998703	5.92395887816251	0.855995038257763	0.0125887272139847	0.128071974940692
Merged-chr6-113625290-3	chr6	113625192	113625392	+	834.972229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009507, intron 1 of 2)	B1_Mm|SINE|Alu	1271.0	NM_009507	22346.0	Mm.29407	NM_009507	ENSMUSG00000033933	Vhl	Vhlh	von Hippel-Lindau tumor suppressor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-62972947-4	chr18	62972842	62973042	+	904.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4974.0	NM_028017	108123.0	Mm.292687	NM_028017	ENSMUSG00000024581	Napg	2400003O04Rik|SNARE	N-ethylmaleimide sensitive fusion protein attachment protein gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-67349533-2	chr17	67349433	67349633	+	851.642822	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	4926.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33169597-2	chr16	33169497	33169697	+	552.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-15474.0	NM_176840	106326.0	Mm.486405	NM_176840	ENSMUSG00000022807	Osbpl11	9430097N02Rik|AI132306|AU019795|ORP-11	oxysterol binding protein-like 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-135735516-4	chr1	135735419	135735619	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007791, intron 1 of 5)	intron (NM_007791, intron 1 of 5)	6352.0	NM_007791	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-31002780-4	chr17	31002677	31002877	+	890.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177465, intron 19 of 21)	intron (NM_177465, intron 19 of 21)	48094.0	NM_177465	52020.0	Mm.25923	NM_177465	ENSMUSG00000054134	Umodl1	D17Ertd488e	uromodulin-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-91473974-1	chr6	91473874	91474074	+	1000.0	f1_c57bl6.idr	promoter-TSS (NM_133928)	promoter-TSS (NM_133928)	223.0	NM_028766	74122.0	Mm.38801	NM_028766	ENSMUSG00000030095	Tmem43	1200015A22Rik|LUMA	transmembrane protein 43	protein-coding	1.61366413635853	1.15630203799937	0.942624214153506	0.919283094229449	1.37694973189265	1.68891094025444	0.737809453991335	0.726428852843829	0.0609324514280843	0.965820128492743	0.998431161219273
Merged-chr12-99333278-2	chr12	99333178	99333378	+	580.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183186, intron 3 of 5)	B4A|SINE|B4	116796.0	NM_183186	71375.0	Mm.341972	NM_183186	ENSMUSG00000033713	Foxn3	5430426H20Rik|AA589593|AW556347|Ches1|Ches1l|HTLFL1	forkhead box N3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-43215879-1	chr3	43215779	43215979	+	636.0	f0_balb.idr	Intergenic	Lx|LINE|L1	1473261.0	NM_027271	73852.0	Mm.29006	NM_027271	ENSMUSG00000025766	D3Ertd751e	2810009O15Rik|4930415G15Rik	DNA segment, Chr 3, ERATO Doi 751, expressed	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-40038082-2	chr1	40037982	40038182	+	803.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	HAL1|LINE|L1	-46632.0	NM_010555	16178.0	Mm.1349	NM_010555	ENSMUSG00000026073	Il1r2	CD121b|Il1r-2	interleukin 1 receptor, type II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-46119273-3	chr9	46119187	46119387	+	563.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027498, intron 1 of 24)	intron (NM_027498, intron 1 of 24)	106467.0	NM_027498	70661.0	Mm.219459	NM_027498	ENSMUSG00000034135	Sik3	5730525O22Rik|9030204A07Rik|AI447252|AI846254|AI849445|Qsk|SIK-3|mKIAA0999	SIK family kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-55888013-4	chr16	55887923	55888123	+	699.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001134457, intron 2 of 5)	intron (NM_001134457, intron 2 of 5)	7256.0	NM_001134457	385658.0	Mm.310635	NM_001134457	ENSMUSG00000075033	Nxpe3	Fam55c|Gm1752|Gm611	neurexophilin and PC-esterase domain family, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-72532803-3	chr14	72532677	72532877	+	707.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	177226.0	NM_207636	319448.0	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-9101132-4	chr5	9101051	9101251	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081029, intron 1 of 4)	CpG	414.0	NM_001081029	652925.0	Mm.439954	NM_001081029	ENSMUSG00000079659	Tmem243	4930420K17Rik|E030031F02Rik	transmembrane protein 243, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-3948388-1	chr7	3948288	3948488	+	802.5	f0_balb.idr	Intergenic	Intergenic	-32887.0	NR_028115	18726.0	Mm.440989	NM_011090	ENSMUSG00000030427	Lilra6	7M1|Pira3	leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-33076345-1	chr4	33076245	33076445	+	562.0	f0_balb.idr	intron (NM_008076, intron 2 of 8)	intron (NM_008076, intron 2 of 8)	13233.0	NM_008076	14409.0	Mm.6227	NM_008076	ENSMUSG00000023267	Gabrr2	-	gamma-aminobutyric acid (GABA) C receptor, subunit rho 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-17485606-3	chr10	17485514	17485714	+	888.333374	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-237614.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116447082-2	chr11	116446980	116447180	+	575.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033267, intron 5 of 13)	intron (NM_001033267, intron 5 of 13)	7267.0	NM_001033267	217341.0	Mm.387352	NM_001033267	ENSMUSG00000070331	Qrich2	Gm66	glutamine rich 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-148406059-2	chr2	148405959	148406159	+	573.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009378, exon 1 of 1)	3' UTR (NM_009378, exon 1 of 1)	2129.0	NM_009378	21824.0	Mm.24096	NM_009378	ENSMUSG00000074743	Thbd	AI385582|CD141|TM	thrombomodulin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-149464298-2	chr3	149464198	149464398	+	997.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	189561.0	NR_040591	381482.0	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-155044721-4	chr2	155044617	155044817	+	728.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015770, intron 1 of 3)	MTD|LTR|ERVL-MaLR	29780.0	NM_016661	269378.0	Mm.330692	NM_016661	ENSMUSG00000027597	Ahcy	AA987153|AL024110|CuBP|SAHH	S-adenosylhomocysteine hydrolase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-68135491-2	chr10	68135348	68135548	+	762.216675	f1_balb.idr|f1_c57bl6.idr	intron (NM_023598, intron 4 of 9)	intron (NM_023598, intron 4 of 9)	143278.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	-0.755998668505046	-0.746265234757744	-0.1835011411898	-0.751921800996326	-0.374998571242037	-0.745544059796034	-0.748756493287208	-0.75149213951642	-0.730804111338351	0.806793324159422	1
Merged-chr18-46357102-4	chr18	46356998	46357198	+	977.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45170.0	NM_001160399	240261.0	Mm.329416	NM_001160399	ENSMUSG00000071855	Ccdc112	8430438M01Rik|AW108467	coiled-coil domain containing 112	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-67621060-3	chr16	67620999	67621199	+	780.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145977)	promoter-TSS (NM_001145977)	-191.0	NM_178721	239857.0	Mm.394300	NM_178721	ENSMUSG00000064115	Cadm2	2900078E11Rik|9330131D06|A830029E02Rik|Igdf4d|Igsf4d|NECL3|SynCAM 2|SynCAM2	cell adhesion molecule 2	protein-coding	0.0280416355310024	0.866862710768845	-0.119552936770596	-0.124439293862339	0.399918151475426	-0.111850965250288	-0.118161425861602	-0.123583531153898	-1.4089659474281	0.533253119130766	1
Merged-chr2-36232210-4	chr2	36232114	36232314	+	979.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008969, intron 2 of 10)	intron (NM_008969, intron 2 of 10)	1788.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-75738643-3	chr12	75738553	75738753	+	943.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2924.0	NM_030750	81535.0	Mm.280199	NM_030750	ENSMUSG00000021054	Sgpp1	AI463453|SPP|SPP1|Spph1	sphingosine-1-phosphate phosphatase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100425997-1	chr11	100425897	100426097	+	614.5	f0_balb.idr	intron (NM_026561, intron 8 of 8)	intron (NM_026561, intron 8 of 8)	10303.0	NM_001163481	14230.0	Mm.3894	NM_010221	ENSMUSG00000001555	Fkbp10	AI325255|FKBP-10|FKBP-65|FKBP65|Fkbp-rs1|Fkbp1-rs|Fkbp6|Fkbprp	FK506 binding protein 10	protein-coding	-1.02229461110127	-1.25478551854561	-1.26468801186812	-1.27282221472164	-1.13869793385056	-1.25263960693339	-1.26244630443638	-1.11563274423375	0.104844671872849	0.973849909092741	1
Merged-chr8-88668764-4	chr8	88668676	88668876	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145857, intron 4 of 12)	intron (NM_145857, intron 4 of 12)	21429.0	NM_145857	257632.0	Mm.222633	NM_145857	ENSMUSG00000055994	Nod2	ACUG|BLAU|CD|Card15|F830032C23Rik|IBD1|Nlrc2	nucleotide-binding oligomerization domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-4546648-2	chr7	4546548	4546748	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360421, intron 1 of 8)	intron (NM_001360421, intron 1 of 8)	893.0	NM_001360421	53420.0	Mm.358663	NM_016908	ENSMUSG00000004961	Syt5	SytV	synaptotagmin V	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-105218786-1	chr13	105218686	105218886	+	803.0	f0_balb.idr	intron (NM_001360891, intron 5 of 7)	intron (NM_001360891, intron 5 of 7)	74228.0	NM_027934	71816.0	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	-1.50467210630133	-1.47277356599314	-1.48241994787067	-1.18678052284827	-1.5024328877521	-1.47068315479943	-1.32845459330151	-1.48892541221987	-0.709758011159116	0.839213727145343	1
Merged-chr7-101363624-4	chr7	101363529	101363729	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040111, intron 1 of 33)	intron (NM_001040111, intron 1 of 33)	-14493.0	NM_001040112	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	5.54366398678608	5.14222258585717	3.99200581328522	5.65794132109287	5.12013139805021	5.28954902030675	4.94117811283953	5.22498766787198	-0.091061916475144	0.801216987594309	0.998431161219273
Merged-chr16-5102480-2	chr16	5102380	5102580	+	550.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008909, intron 10 of 21)	intron (NM_008909, intron 10 of 21)	30001.0	NM_008909	19041.0	Mm.266875	NM_008909	ENSMUSG00000039457	Ppl	AW553870	periplakin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-30749697-4	chr10	30749577	30749777	+	967.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358842, intron 2 of 14)	intron (NM_001358842, intron 2 of 14)	53649.0	NM_001358841	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-19291749-3	chr10	19291644	19291844	+	648.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64795.0	NM_053008	94222.0	Mm.156946	NM_053008	ENSMUSG00000045591	Olig3	Bhlhb7|bHLHe20|oligo3	oligodendrocyte transcription factor 3	protein-coding	1.77463780674728	2.15442780329756	1.12268280247518	2.01113801667411	1.6489129608733	2.99481701127518	2.32608101462353	1.1021027464119	0.954984850770469	0.382265191175621	0.873396688145393
Merged-chr17-57220129-2	chr17	57220000	57220200	+	595.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_009778, exon 18 of 41)	exon (NM_009778, exon 18 of 41)	-2872.0	NR_105944	102465591.0		NR_105944	ENSMUSG00000099066	Mir6978	Gm27858|mmu-mir-6978	microRNA 6978	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-113007543-2	chr5	113007443	113007643	+	883.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285806, intron 1 of 20)	intron (NM_001285806, intron 1 of 20)	7995.0	NM_001285806	320129.0	Mm.285619	NM_177078	ENSMUSG00000042249	Grk3	4833444A01Rik|AI851927|AW551196|Adrbk-2|Adrbk2|Bark-2	G protein-coupled receptor kinase 3	protein-coding	1.8405501089805	0.879243969824248	1.07859400881658	1.49062842053226	1.92644938049727	0.882712367519	1.08573055417059	1.49911732715723	0.129428409737594	0.9227407306219	0.998431161219273
Merged-chr11-98933366-4	chr11	98933265	98933465	+	940.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4331.0	NM_009024	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-92473157-2	chr1	92473057	92473257	+	820.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_024197, intron 1 of 9)	intron (NM_024197, intron 1 of 9)	601.0	NM_024197	67273.0	Mm.248778	NM_024197	ENSMUSG00000026260	Ndufa10	2900053E13Rik	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31256269-2	chr14	31256169	31256369	+	561.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_027088, exon 11 of 17)	exon (NM_027088, exon 11 of 17)	4780.0	NM_027088	104416.0	Mm.3779	NM_027088	ENSMUSG00000021901	Bap1	2300006C11Rik|AA989761|AW553466|mKIAA0272|uch-x4	Brca1 associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-59476430-2	chr1	59476327	59476527	+	839.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5720.0	NM_008057	14369.0	Mm.297906	NM_008057	ENSMUSG00000041075	Fzd7	Fz7	frizzled class receptor 7	protein-coding	-2.05752322593321	-2.15521190974092	-2.16307242109104	-2.16952927915413	-2.17938029103484	-2.15350850414045	-2.16129297361887	-2.16837350464794	-0.683654500252594	0.846597994014493	1
Merged-chr2-70824705-1	chr2	70824605	70824805	+	598.5	f0_balb.idr	intron (NM_172664, intron 1 of 19)	intron (NM_172664, intron 1 of 19)	775.0	NM_172664	228012.0	Mm.136511	NM_172664	ENSMUSG00000041997	Tlk1	4930545J15Rik	tousled-like kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-11701004-4	chr18	11700906	11701106	+	737.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081223, intron 6 of 18)	intron (NM_001081223, intron 6 of 18)	43657.0	NM_001081223	225182.0	Mm.154275	NM_175458	ENSMUSG00000041238	Rbbp8	9930104E21Rik|CtIP|RBBP-8|RIM|SAE2	retinoblastoma binding protein 8, endonuclease	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-20589385-2	chr4	20589285	20589485	+	547.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172987, intron 1 of 4)	intron (NM_172987, intron 1 of 4)	189283.0	NM_001290410	269513.0	Mm.317473	NM_172987	ENSMUSG00000055761	Nkain3	C530048M05|E130310K16Rik	Na+/K+ transporting ATPase interacting 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-59004705-4	chr13	59004610	59004810	+	857.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025074, intron 13 of 17)	intron (NM_001025074, intron 13 of 17)	197013.0	NM_001025074	18212.0	Mm.130054	NM_008745	ENSMUSG00000055254	Ntrk2	GP145-TrkB/GP95-TrkB|Tkrb|trk-B|trkB	neurotrophic tyrosine kinase, receptor, type 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-58488098-3	chr13	58487989	58488189	+	790.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-84746.0	NM_001301341	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-50885315-3	chr9	50885164	50885364	+	764.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286553, intron 15 of 16)	intron (NM_001286553, intron 15 of 16)	28340.0	NM_001286553	73699.0	Mm.7726	NM_028614	ENSMUSG00000032058	Ppp2r1b	2410091N08Rik|AI790395	protein phosphatase 2, regulatory subunit A, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122885475-2	chr8	122885382	122885582	+	757.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 12 of 12)	intron (NM_001081379, intron 12 of 12)	37108.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	0.530112915237321	0.106622881663182	0.0979292167227271	0.091131933802517	0.540116243263696	0.108565085010544	1.33109553319555	0.092325229410422	2.38995717688548	0.247004768876118	1
Merged-chr12-91311400-2	chr12	91311300	91311500	+	680.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_181815, intron 10 of 25)	intron (NM_181815, intron 10 of 25)	73009.0	NM_181815	75216.0	Mm.312204	NM_181815	ENSMUSG00000061533	Cep128	4930534B04Rik|5430424K18Rik|AI449708|AI480494|E230024F20	centrosomal protein 128	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-61515232-2	chr9	61515132	61515332	+	746.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ERV3-16A3_I-int|LTR|ERVL	142866.0	NM_001083927	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-141084498-4	chr5	141084406	141084606	+	983.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-83910.0	NM_175362	108723.0	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-108662318-2	chr6	108662218	108662418	+	604.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011498, intron 3 of 4)	intron (NM_011498, intron 3 of 4)	-1384.0	NR_104577	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-11708856-3	chr16	11708702	11708902	+	641.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028964, intron 18 of 20)	intron (NM_028964, intron 18 of 20)	-70900.0	NR_126430	73761.0	Mm.39183	NR_126430		4833415N18Rik	-	RIKEN cDNA 4833415N18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-25571417-2	chr15	25571317	25571517	+	558.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-51133.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-20119854-2	chr8	20119754	20119954	+	563.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	177578.0	NR_030708	547150.0	Mm.359054	NR_030708	ENSMUSG00000071796	6820431F20Rik	-	cadherin 11 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-22050285-2	chr9	22050185	22050385	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010487, intron 1 of 6)	MIR3|SINE|MIR	1738.0	NM_010487	15571.0	Mm.390167	NM_010487	ENSMUSG00000003410	Elavl3	2600009P04Rik|Huc|PLE21|mHuC	ELAV like RNA binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-29310194-2	chr7	29310094	29310294	+	550.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013874, intron 3 of 11)	URR1A|DNA|hAT-Charlie	6189.0	NM_013874	29861.0	Mm.101885	NM_013874	ENSMUSG00000030584	Dpf1	Neud4	D4, zinc and double PHD fingers family 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16817469-2	chr7	16817369	16817569	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173430)	promoter-TSS (NM_173430)	-737.0	NM_173430	243853.0	Mm.39703	NM_173430	ENSMUSG00000048920	Fkrp	A830029B19Rik|AI842067|AI847300|LGMD1I|MDC1C	fukutin related protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-127035669-4	chr3	127035560	127035760	+	938.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001327938, intron 10 of 47)	L2|LINE|L2	-37208.0	NM_178655	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	4.75222595784305	4.17752171478627	4.45853089852859	5.0324990517307	4.30512262107792	4.20759679109112	3.83866558516474	4.5944994042991	-0.489301512163916	0.221982396983744	0.713583934962101
Merged-chr12-83958512-4	chr12	83958406	83958606	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7898.0	NM_023633	71952.0	Mm.251483	NM_023633	ENSMUSG00000046791	Riox1	2410016O06Rik|MAPJD|NO66	ribosomal oxygenase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-136053445-4	chr4	136053355	136053555	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025919)	promoter-TSS (NM_025919)	-84.0	NM_025919	67025.0	Mm.276856	NM_025919	ENSMUSG00000059291	Rpl11	2010203J19Rik	ribosomal protein L11	protein-coding	5.14131656403361	5.10638455049332	5.5577779165662	5.11205919538537	5.06784180011476	5.36431769317175	4.25512357326072	5.52562020912692	-0.128162657696224	0.70322650458493	0.998431161219273
Merged-chr2-165320635-4	chr2	165320521	165320721	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080287, intron 1 of 20)	intron (NM_080287, intron 1 of 20)	205.0	NM_001302752	140579.0	Mm.35064	NM_080287	ENSMUSG00000017670	Elmo2	1190002F24Rik|CED-12	engulfment and cell motility 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56425705-4	chr17	56425625	56425825	+	914.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011218, exon 14 of 33)	exon (NM_011218, exon 14 of 33)	-6816.0	NR_105943	102465590.0		NR_105943	ENSMUSG00000098339	Mir6977	Gm27922|mmu-mir-6977	microRNA 6977	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-13301309-3	chr18	13301196	13301396	+	957.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	294306.0	NM_153087	225192.0	Mm.207073	NM_153087	ENSMUSG00000037346	Hrh4	AXOR35|BG26|GPCR105|GPRv53|H4|H4R|HH4R	histamine receptor H4	protein-coding	2.96747281985799	3.24818779830627	2.1585680951772	2.25257624382338	2.2838219595005	3.1098478848798	1.76609251393927	2.82982346634564	-0.281273322794179	0.726541956160049	0.998431161219273
Merged-chr10-9902125-4	chr10	9902023	9902223	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1083.0	NM_001081344	78808.0	Mm.331751	NM_030191	ENSMUSG00000019790	Stxbp5	0710001E20Rik|4930565N16Rik|AW742610|LGL3|mKIAA1006	syntaxin binding protein 5 (tomosyn)	protein-coding	5.2986856042075	4.1709471994271	5.33030687679193	4.50814280587008	4.27330512520155	5.1175700363274	4.88757988161392	4.71025414785054	-0.184459732341961	0.633407237902803	0.982417279970648
Merged-chr2-129591496-2	chr2	129591424	129591624	+	665.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1315.0	NM_001291020	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	0.394318766767935	0.614668065664386	0.475068425829529	0.0719386840898033	0.0675405848334777	0.252018886001492	0.0759881919997656	0.0724861952694826	-3.06086460224944	0.145212661258616	1
Merged-chr17-70738769-1	chr17	70738669	70738869	+	571.0	f1_c57bl6.idr	intron (NM_001347411, intron 9 of 14)	intron (NM_001347411, intron 9 of 14)	108008.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	-0.750811218098666	-0.242811550479088	-0.744025628413613	-0.746578306832759	-0.750181932526312	-0.7399670691084	-0.275216867179886	-0.746132511087657	-0.116082209314499	0.96881444611162	1
Merged-chr1-165707489-3	chr1	165707385	165707585	+	934.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038846, intron 1 of 5)	intron (NM_001038846, intron 1 of 5)	609.0	NM_001038846	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-136430352-4	chr1	136430259	136430459	+	939.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026500, intron 4 of 7)	intron (NM_026500, intron 4 of 7)	-14840.0	NR_024328	320054.0	Mm.208000	NR_024328	ENSMUSG00000097403	9230116N13Rik	-	RIKEN cDNA 9230116N13 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-39542035-4	chr18	39541927	39542127	+	994.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54782.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-43061420-3	chr17	43061341	43061541	+	955.694458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178589, intron 3 of 5)	intron (NM_178589, intron 3 of 5)	44886.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	1.77269416865918	1.07031926645273	1.04591653300536	1.02643538290067	2.3025010248027	2.02644807784569	1.95268465646319	2.35600938363511	2.78762666605575	0.0197839329631516	0.178203924693613
Merged-chr14-70021611-4	chr14	70021474	70021674	+	742.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028560, intron 4 of 6)	intron (NM_028560, intron 4 of 6)	-55871.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-95519384-2	chr10	95519284	95519484	+	665.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_080560, intron 1 of 3)	intron (NM_080560, intron 1 of 3)	4222.0	NM_080560	93765.0	Mm.371667	NM_080560	ENSMUSG00000074781	Ube2n	1500026J17Rik|AL022654|BB101821|UBC13	ubiquitin-conjugating enzyme E2N	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-126576176-3	chr3	126576075	126576275	+	623.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-20776.0	NM_001346636	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-11810602-3	chr19	11810492	11810692	+	742.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011502, intron 1 of 10)	intron (NM_011502, intron 1 of 10)	8811.0	NM_001286543	20908.0	Mm.272264	NM_011502	ENSMUSG00000041488	Stx3	Syn-3	syntaxin 3	protein-coding	0.262973479455129	1.48225704773622	0.287289005181769	0.278283394740425	0.265280736561754	1.19076254878205	0.867011421294063	0.279867986558225	-0.0184606116373424	0.992331085679552	0.998431161219273
Merged-chr7-19932115-2	chr7	19932015	19932215	+	740.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10972.0	NM_027514	52118.0	Mm.227506	NM_027514	ENSMUSG00000040511	Pvr	3830421F03Rik|CD155|D7Ertd458e|HVED|PVS|Taa1|Tage4|mE4|necl-5	poliovirus receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-165845432-3	chr1	165845375	165845575	+	737.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113391, intron 1 of 7)	intron (NM_001113391, intron 1 of 7)	56794.0	NM_001113392	12503.0	Mm.217308	NM_031162	ENSMUSG00000005763	Cd247	4930549J05Rik|A430104F18Rik|AW552088|Cd3|Cd3-eta|Cd3-zeta|Cd3h|Cd3z|Cd3zeta|T3z|Tcrk|Tcrz	CD247 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-33844320-4	chr3	33844226	33844426	+	994.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026222)	promoter-TSS (NM_026222)	-16.0	NM_026222	51938.0	Mm.275710	NM_026222	ENSMUSG00000027676	Ccdc39	4921507O14Rik|AI447426|AI844750|D3Ertd789e|b2b1304Clo|b2b1735Clo|b2b2025.1Clo|prh	coiled-coil domain containing 39	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-46314047-2	chr11	46313947	46314147	+	830.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1188.0	NM_001252459	76884.0	Mm.154358	NM_133769	ENSMUSG00000020340	Cyfip2	1500004I01Rik|6430511D02Rik|AA930218|AU022376|Pir121|mKIAA1168	cytoplasmic FMR1 interacting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-126890063-4	chr4	126889968	126890168	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001357201, exon 20 of 28)	exon (NM_001357201, exon 20 of 28)	77855.0	NM_001357201	67785.0	Mm.165401	NM_001114399	ENSMUSG00000042446	Zmym4	6330503C17Rik|AI480785|AW493829|CDIR|D630001M21|MYM|Zfp262|Znf262|mKIAA0425	zinc finger, MYM-type 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5798671-4	chr17	5798562	5798762	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045081)	promoter-TSS (NR_045081)	5.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5606876-2	chr17	5606776	5606976	+	732.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	114276.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-86588385-4	chr4	86588288	86588488	+	688.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173400, intron 12 of 16)	B3|SINE|B2	-1818.0	NR_028545	100217448.0	Mm.453533	NR_028545	ENSMUSG00000088958	Scarna8	MBI-57	small Cajal body-specific RNA 8	ncRNA	0.32131863301546	0.771221169781587	1.00984856194632	0.335052508537549	0.653377200928264	1.50081176560056	0.345481578788507	0.336479751700424	0.799661581342244	0.65611797207654	1
Merged-chr19-19675618-2	chr19	19675518	19675718	+	582.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	-564422.0	NM_001043354	225998.0	Mm.234641	NM_146095	ENSMUSG00000036192	Rorb	Nr1f2|RZR-beta|RZRB|Rorbeta|hstp	RAR-related orphan receptor beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-23482151-1	chr1	23482051	23482251	+	556.0	f0_balb.idr	Intergenic	Lx9|LINE|L1	-92436.0	NR_151529	105243890.0	Mm.383635	NR_151529		Gm28822	-	predicted gene 28822	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-105810029-4	chr7	105809948	105810148	+	980.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_025301, exon 3 of 3)	exon (NM_025301, exon 3 of 3)	1039.0	NM_025301	27397.0	Mm.44225	NM_025301	ENSMUSG00000030879	Mrpl17	MRP-L26|Rpml26	mitochondrial ribosomal protein L17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-34727605-2	chr11	34727505	34727705	+	817.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_033374, intron 5 of 51)	intron (NM_033374, intron 5 of 51)	56300.0	NM_033374	94176.0	Mm.380679	NM_033374	ENSMUSG00000020143	Dock2	AI662014|AW122239|CED-5|Hch|MBC	dedicator of cyto-kinesis 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-20621523-4	chr16	20621415	20621615	+	937.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028420)	promoter-TSS (NM_028420)	-237.0	NM_028420	73047.0	Mm.425977	NM_028420	ENSMUSG00000051146	Camk2n2	2900075A18Rik	calcium/calmodulin-dependent protein kinase II inhibitor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26497652-6	chr17	26497548	26497748	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10824.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140116892-2	chr5	140116792	140116992	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359025, intron 14 of 17)	intron (NM_001359025, intron 14 of 17)	58026.0	NM_001359027	17120.0	Mm.27250	NM_010752	ENSMUSG00000029554	Mad1l1	AI173502|AW550425|Mad1	MAD1 mitotic arrest deficient 1-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-128590433-3	chr8	128590299	128590499	+	765.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-95255.0	NM_010578	16412.0	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-11686759-2	chr11	11686659	11686859	+	972.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025597, intron 1 of 7)	intron (NM_001025597, intron 1 of 7)	834.0	NM_001025597	22778.0	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105289576-4	chr8	105289481	105289681	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166394)	promoter-TSS (NM_001166394)	-53.0	NM_028888	74356.0	Mm.204876	NM_028888	ENSMUSG00000014837	4931428F04Rik	AI426165|Kiaa0895l	RIKEN cDNA 4931428F04 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-53460559-3	chr19	53460520	53460720	+	772.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028427, intron 2 of 9)	intron (NR_028427, intron 2 of 9)	4176.0	NR_028427	381232.0	Mm.248624	NR_028427	ENSMUSG00000097636	Mirt1	4833407H14Rik|5430437C04Rik|5830416P10Rik|Gm10758	myocardial infarction associated transcript 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-86781927-2	chr10	86781827	86782027	+	739.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175331, intron 1 of 13)	intron (NM_175331, intron 1 of 13)	2922.0	NM_175331	103466.0	Mm.200446	NM_175331	ENSMUSG00000054027	Nt5dc3	AU040402|AW540062|C630002B14Rik|TU12B1-TY	5'-nucleotidase domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-93093933-1	chr7	93093833	93094033	+	559.0	f0_balb.idr	Intergenic	Intergenic	14054.0	NM_021427	58238.0	Mm.113787	NM_021427	ENSMUSG00000051515	Fam181b	A830059I20Rik|AB041569	family with sequence similarity 181, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-46701698-3	chr13	46701603	46701803	+	729.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175749, exon 12 of 22)	exon (NM_175749, exon 12 of 22)	26146.0	NM_175749	218210.0	Mm.255398	NM_175749	ENSMUSG00000021374	Nup153	B130015D15Rik|C88147	nucleoporin 153	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-14112376-4	chr16	14112259	14112459	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081154, intron 26 of 26)	intron (NM_001081154, intron 26 of 26)	46915.0	NM_001081154	223989.0	Mm.85442	NM_001081154	ENSMUSG00000060657	Marf1	4921513D23Rik|BC031575|C87306|E030019O05|Lkap|mKIAA0430	meiosis regulator and mRNA stability 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-105258777-4	chr14	105258672	105258872	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001190989)	promoter-TSS (NM_001190989)	99.0	NM_001190989	76273.0	Mm.290669	NM_029561	ENSMUSG00000053253	Ndfip2	0710001O20Rik|2810436B12Rik|9130207N19Rik|N4wbp5a|mKIAA1165	Nedd4 family interacting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-24249523-1	chr6	24249423	24249623	+	667.0	f1_c57bl6.idr	Intergenic	RMER13B|LTR|ERVK	-81431.0	NM_019481	55961.0	Mm.19299	NM_019481	ENSMUSG00000029700	Slc13a1	AI314066|AI987826|NaSi-1|Nas1	solute carrier family 13 (sodium/sulfate symporters), member 1	protein-coding	-0.279739479046033	-0.261200796819024	0.245575317569669	0.768942499900514	-0.278566494860465	-0.259852240995971	-0.265884963762651	-0.271075773695179	-3.97780609765964	0.101394040621457	1
Merged-chr10-88712583-4	chr10	88712486	88712686	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18515.0	NM_001037166	237433.0	Mm.478763	NM_001037166		Gm4925	EG237433	predicted gene 4925	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-136043956-3	chr4	136043863	136044063	+	944.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7696.0	NR_154592	105245868.0		NR_154592		Gm48909	-	predicted gene, 48909	pseudo	2.29881757930704	3.07136173006345	1.4809555677119	2.2884032254973	2.91789059778074	3.50391138449318	2.37947377814922	3.58047691765321	1.42520891512705	0.0692706667434179	0.395265704300689
Merged-chr19-6973967-2	chr19	6973867	6974067	+	573.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1081.0	NM_008889	18938.0	Mm.140	NM_008889	ENSMUSG00000056612	Ppp1r14b	AOM172|PHI-1|PLCB3N|Png	protein phosphatase 1, regulatory (inhibitor) subunit 14B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-91505638-3	chr13	91505538	91505738	+	934.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360776, intron 1 of 15)	intron (NM_001360776, intron 1 of 15)	44541.0	NM_024186	66970.0	Mm.343095	NM_024186	ENSMUSG00000003992	Ssbp2	1500004K09Rik|2310079I02Rik|9330163K02Rik|A830008M03Rik|AU067692|AW558684|Hspc116|SSDP2	single-stranded DNA binding protein 2	protein-coding	-1.8429182434137	-1.8129848525291	-1.82203695700074	-1.54461076807193	-1.84081697472045	-1.81102322372834	-1.81998775896484	-1.82814164409203	-1.43114970378833	0.684630132144154	1
Merged-chr18-80198962-2	chr18	80198986	80199186	+	841.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_199197, intron 1 of 5)	L1MD3|LINE|L1	1533.0	NM_199197	68731.0	Mm.186936	NM_199197	ENSMUSG00000024570	Rbfa	1110032A13Rik|AI595940	ribosome binding factor A	protein-coding	0.70135270263183	0.0948858838836903	0.0872490821652352	0.081302806386387	0.0728149773479564	1.10659867808671	0.0889401376088932	0.430863037526719	1.33688627776247	0.525755459736829	1
Merged-chr7-117487054-4	chr7	117486958	117487158	+	992.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175645, intron 2 of 11)	MIR|SINE|MIR	106079.0	NM_175645	233781.0	Mm.461427	NM_175645	ENSMUSG00000030657	Xylt1	8030490L12	xylosyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-14130367-4	chr10	14130281	14130481	+	993.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010437, exon 4 of 9)	exon (NM_010437, exon 4 of 9)	164002.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133674189-4	chr4	133674075	133674275	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1009.0	NM_001356466	230801.0	Mm.217004	NM_178698	ENSMUSG00000043257	Pigv	B330013B03|D430024F16Rik	phosphatidylinositol glycan anchor biosynthesis, class V	protein-coding	0.0633926225878295	0.084259219491233	0.0774680290296178	0.250322102521205	0.0647075286747089	0.86334285681954	0.804545580932856	0.253552972648248	3.37335337303689	0.0978962783764351	1
Merged-chr15-80560325-2	chr15	80560225	80560425	+	583.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001163189, exon 1 of 6)	exon (NM_001163189, exon 1 of 6)	145.0	NM_001163189	383075.0	Mm.297626	NM_001163189	ENSMUSG00000050439	Enthd1	Gm1242|Gm86	ENTH domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-156466533-1	chr1	156466433	156466633	+	667.0	f1_c57bl6.idr	intron (NM_009230, intron 2 of 15)	B3|SINE|B2	7795.0	NM_009230	20652.0	Mm.28099	NM_009230	ENSMUSG00000026600	Soat1	8430426K15Rik|ACAT-1|AW550831|Acact|ald|hid	sterol O-acyltransferase 1	protein-coding	0.195980731907117	0.429430709891312	0.0608555704482161	0.491986865395012	0.0496169933656078	0.068223210892216	0.851340548750567	0.0570183048775349	0.103257034667219	0.960010186409277	1
Merged-chr2-141012108-3	chr2	141012004	141012204	+	679.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013802, intron 4 of 18)	intron (NM_001013802, intron 4 of 18)	-340628.0	NM_178382	71436.0	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-11431324-2	chr2	11431224	11431424	+	608.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-32824.0	NR_040615	77543.0	Mm.490670	NR_040615	ENSMUSG00000102674	8030442B05Rik	-	RIKEN cDNA 8030442B05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-15499838-4	chr17	15499725	15499925	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013684)	promoter-TSS (NM_013684)	-63.0	NM_013684	21374.0	Mm.244820	NM_013684	ENSMUSG00000014767	Tbp	GTF2D1|Gtf2d|SCA17|TFIID	TATA box binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-67450633-4	chr17	67450531	67450731	+	920.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-96140.0	NM_001357625	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-45952827-2	chr9	45952727	45952927	+	897.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_172257, exon 3 of 26)	exon (NM_172257, exon 3 of 26)	-1159.0	NR_152206	100101457.0	Mm.397964	NR_152206	ENSMUSG00000111329	A830035O19Rik	-	RIKEN cDNA A830035O19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-161190435-1	chr1	161190335	161190535	+	585.0	f0_balb.idr	Intergenic	MTD|LTR|ERVL-MaLR	-31121.0	NM_001195189	100502590.0	Mm.449990	NM_001195189	ENSMUSG00000049160	Tex50	4930469G21Rik	testis expressed 50	protein-coding	3.22344781790137	2.21741233019751	2.13764030823241	1.66170809958932	3.49542028642412	3.44082654061841	2.15560977921561	2.24826601820049	0.967166052991029	0.247695435970846	0.747080687713142
Merged-chr1-37625620-2	chr1	37625520	37625720	+	843.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_028096, exon 7 of 10)	exon (NM_028096, exon 7 of 10)	-84604.0	NM_173870	269181.0	Mm.25861	NM_173870	ENSMUSG00000026110	Mgat4a	9530018I07Rik|GnT-IVa|glcNAc-T-IVa	mannoside acetylglucosaminyltransferase 4, isoenzyme A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88483227-1	chr3	88483127	88483327	+	542.0	f1_c57bl6.idr	TTS (NM_019390)	TTS (NM_019390)	10085.0	NM_019390	16905.0	Mm.243014	NM_019390	ENSMUSG00000028063	Lmna	Dhe	lamin A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-76622819-4	chr11	76622718	76622918	+	817.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-45079.0	NM_198894	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-32036406-4	chr17	32036296	32036496	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_028244, exon 1 of 16)	5' UTR (NM_028244, exon 1 of 16)	234.0	NM_028244	72462.0	Mm.102761	NM_028244	ENSMUSG00000058392	Rrp1b	2600005C20Rik|D030064A17|Kiaa0179|mKIAA0179	ribosomal RNA processing 1 homolog B (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31380019-3	chr14	31379922	31380122	+	735.75	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347585, intron 3 of 7)	intron (NM_001347585, intron 3 of 7)	37655.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-66236808-2	chr14	66236708	66236908	+	728.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	-22984.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94356451-2	chr10	94356351	94356551	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 1 of 4)	Lx8|LINE|L1	44502.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-73147921-4	chr15	73147834	73148034	+	866.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153178, intron 1 of 18)	intron (NM_153178, intron 1 of 18)	37013.0	NM_153178	239528.0	Mm.23095	NM_153178	ENSMUSG00000036698	Ago2	1110029L17Rik|2310051F07Rik|AI225898|AL022874|AW546247|Eif2c2|Gerp95|Gm10365|mKIAA4215	argonaute RISC catalytic subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-145738630-2	chr3	145738530	145738730	+	863.6666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-20062.0	NM_026993	69219.0	Mm.234247	NM_026993	ENSMUSG00000028194	Ddah1	2410006N07Rik|2510015N06Rik|AI987801|AW050362	dimethylarginine dimethylaminohydrolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-21206603-2	chr5	21206503	21206703	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153365, intron 3 of 26)	intron (NR_153365, intron 3 of 26)	20336.0	NM_001359877	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-135235815-3	chr6	135235696	135235896	+	839.1889039999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028982, exon 13 of 13)	3' UTR (NM_028982, exon 13 of 13)	12088.0	NM_001080552	14840.0	Mm.272306	NM_010352	ENSMUSG00000030206	Gsg1	-	germ cell associated 1	protein-coding	1.18225947442441	0.895298531380605	0.878729732788126	1.91154576438337	1.73643661510597	1.13885509705716	1.28954639223688	1.92287459591906	0.865046992548165	0.508014251547949	0.943374049681311
Merged-chr15-29824376-3	chr15	29824279	29824479	+	952.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-110975.0	NR_039542	100628607.0		NR_039542	ENSMUSG00000092639	Mir3964	mmu-mir-3964|mu-mir-3964	microRNA 3964	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-102425670-7	chr11	102425576	102425776	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4646.0	NM_008175	14824.0	Mm.1568	NM_008175	ENSMUSG00000034708	Grn	Pgrn|epithelin	granulin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88176268-2	chr3	88176168	88176368	+	624.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045997, intron 1 of 2)	L1Md_T|LINE|L1	1517.0	NR_045997	76642.0	Mm.424420	NR_045997	ENSMUSG00000096935	1700113A16Rik	2210408E11Rik|AA408983	RIKEN cDNA 1700113A16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-88767153-4	chr5	88767070	88767270	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007832, intron 1 of 6)	intron (NM_007832, intron 1 of 6)	2157.0	NM_007832	13178.0	Mm.298892	NM_007832	ENSMUSG00000029366	Dck	-	deoxycytidine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-69365611-2	chr18	69365511	69365711	+	605.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 3 of 19)	intron (NM_001361128, intron 3 of 19)	19451.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-34922136-4	chr6	34922026	34922226	+	914.866699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009292, intron 1 of 8)	intron (NM_009292, intron 1 of 8)	1178.0	NM_009292	20899.0	Mm.5171	NM_009292	ENSMUSG00000029848	Stra8	-	stimulated by retinoic acid gene 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-63135933-2	chr9	63135833	63136033	+	950.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11047.0	NM_172446	207667.0	Mm.36349	NM_172446	ENSMUSG00000022245	Skor1	AV273001|C230094B15Rik|Corl1|Lbxcor1	SKI family transcriptional corepressor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-55381269-2	chr15	55381169	55381369	+	765.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_181277, intron 11 of 47)	intron (NM_181277, intron 11 of 47)	73519.0	NM_181277	12818.0	Mm.297859	NM_181277	ENSMUSG00000022371	Col14a1	5730412L22Rik|AW108078	collagen, type XIV, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132383551-2	chr4	132383451	132383651	+	624.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175306, intron 3 of 13)	B1F2|SINE|Alu	-29865.0	NR_003270	399101.0	Mm.486919	NR_002904	ENSMUSG00000085241	Snhg3	Rnu17d|U17HG	small nucleolar RNA host gene 3	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-40714141-2	chr19	40714041	40714241	+	599.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001304721, intron 2 of 9)	intron (NM_001304721, intron 2 of 9)	54371.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-137424502-2	chr7	137424402	137424602	+	556.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13071.0	NM_001348093	30926.0	Mm.267692	NM_023140	ENSMUSG00000031068	Glrx3	PICOT|Txnl2	glutaredoxin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-11322194-4	chr4	11322092	11322292	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081201)	promoter-TSS (NM_001081201)	-61.0	NM_001081201	381510.0	Mm.331486	NM_001081201	ENSMUSG00000045205	Dpy19l4	Gm1023|Narg3	dpy-19-like 4 (C. elegans)	protein-coding	4.90672117659409	4.27862523646567	4.89093857393669	4.80604950070838	4.79062485071693	5.03344378113795	3.47241356196918	4.44383861675883	-0.245191863488171	0.550122171710932	0.958882219733107
Merged-chr2-127333863-2	chr2	127333763	127333963	+	809.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2296.0	NM_010090	13537.0	Mm.4729	NM_010090	ENSMUSG00000027368	Dusp2	PAC1	dual specificity phosphatase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-7320080-1	chr17	7319980	7320180	+	541.0	f0_c57.idr	Intergenic	Intergenic	-4580.0	NM_011553	21461.0	Mm.264651	NM_011553	ENSMUSG00000071322	Tcp10a	D17Leh66A|D17Leh66aa|Gm10326|T66A-a|Tcp-10a	t-complex protein 10a	protein-coding	-1.07637186174354	-0.710584347346669	-1.20769886504504	-1.21655996976359	-1.22292325303089	-1.19457377095274	-1.20525683050782	-1.21497383625558	-2.53931642760192	0.437326703338958	1
Merged-chr7-19029481-3	chr7	19029375	19029575	+	868.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360713, intron 3 of 22)	intron (NM_001360713, intron 3 of 22)	5098.0	NM_026605	68188.0	Mm.130902	NM_026605	ENSMUSG00000023118	Sympk	1500016F02Rik|4632415H16Rik|AA125406|AI449890|SPK|SYM	symplekin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-121845381-2	chr3	121845281	121845481	+	638.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30079.0	NM_008991	19299.0	Mm.399042	NM_008991	ENSMUSG00000028127	Abcd3	AI313901|AU018866|AW146054|PMP68|PMP70|Pxmp1	ATP-binding cassette, sub-family D (ALD), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-34644809-4	chr2	34644691	34644891	+	843.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	110441.0	NM_001356441	66691.0	Mm.156452	NM_025709	ENSMUSG00000026867	Gapvd1	2010005B09Rik|4432404J10Rik|AW108497|Gapex-5|RAP6|RME-6|mKIAA1521	GTPase activating protein and VPS9 domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-131540292-2	chr7	131540192	131540392	+	893.7999880000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2671.0	NM_008257	15373.0	Mm.323562	NM_008257	ENSMUSG00000040148	Hmx3	Nkx-5.1|Nkx5-1|Nkx5.1	H6 homeobox 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-95564227-4	chr10	95564125	95564325	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027722)	promoter-TSS (NM_027722)	-79.0	NM_001358996	71207.0	Mm.24397	NM_027722	ENSMUSG00000020029	Nudt4	4933436C10Rik|DIPP-2|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P	nudix (nucleoside diphosphate linked moiety X)-type motif 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-115740311-2	chr3	115740211	115740411	+	730.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	-25256.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	1.12720954083334	0.294935875167138	0.616488303439216	0.448828432301644	0.423465898785601	0.296464011155943	0.624168262008426	0.451941439526009	-1.38172401842633	0.424493967539871	1
Merged-chr4-122850088-1	chr4	122849988	122850188	+	541.0	f1_balb.idr	intron (NM_008917, intron 5 of 8)	intron (NM_008917, intron 5 of 8)	13861.0	NM_008917	19063.0	Mm.277719	NM_008917	ENSMUSG00000028657	Ppt1	9530043G02Rik|AA960502|C77813|CLN1|D4Ertd184e|INCL|PPT	palmitoyl-protein thioesterase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-30864116-2	chr3	30864016	30864216	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286994, intron 1 of 3)	MTD|LTR|ERVL-MaLR	8166.0	NM_001286994	71862.0	Mm.272019	NM_027965	ENSMUSG00000037661	Gpr160	1700025D19Rik|GPCR150	G protein-coupled receptor 160	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-75701972-4	chr7	75701869	75702069	+	990.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 16 of 36)	intron (NM_029332, intron 16 of 36)	-146369.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-49635420-2	chr4	49635320	49635520	+	545.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_182999, intron 3 of 20)	L2|LINE|L2	-3205.0	NM_001356401	109331.0	Mm.24765	NM_182999	ENSMUSG00000028309	Rnf20	4833430L21Rik|AW540162|C79397|mKIAA4116	ring finger protein 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19631625-2	chr7	19631525	19631725	+	814.166626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_019649)	TTS (NM_019649)	-2187.0	NM_009046	19698.0	Mm.1741	NM_009046	ENSMUSG00000002983	Relb	shep	avian reticuloendotheliosis viral (v-rel) oncogene related B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-115594700-2	chr6	115594600	115594800	+	616.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2124.0	NM_001101431	70291.0	Mm.133694	NM_001101431	ENSMUSG00000068011	Mkrn2os	2510049J12Rik	makorin, ring finger protein 2, opposite strand	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-85693349-4	chr9	85693282	85693482	+	868.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175371, intron 25 of 27)	intron (NM_175371, intron 25 of 27)	55952.0	NM_001081282	108837.0	Mm.22315	NM_175371	ENSMUSG00000035941	Ibtk	5430411K16Rik|AA409502|BTKI|mKIAA1417	inhibitor of Bruton agammaglobulinemia tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-130796135-4	chr4	130796036	130796236	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011520, intron 1 of 4)	MIR|SINE|MIR	3599.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-23792947-2	chr1	23792856	23793056	+	699.875	f0_balb.idr|f0_c57.idr	intron (NM_172124, intron 1 of 3)	intron (NM_172124, intron 1 of 3)	31030.0	NM_172124	280645.0	Mm.471661	NM_172124	ENSMUSG00000026156	B3gat2	GlcAT-S|Glcats	beta-1,3-glucuronyltransferase 2 (glucuronosyltransferase S)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32497142-2	chr2	32497042	32497242	+	677.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-38217.0	NM_153560	98952.0	Mm.4065	NM_153560	ENSMUSG00000039157	Fam102a	AI426465|C230093N12Rik|Eeig1	family with sequence similarity 102, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-11129295-3	chr17	11129195	11129395	+	573.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001317726, intron 2 of 6)	intron (NM_001317726, intron 2 of 6)	288936.0	NM_016694	50873.0	Mm.311110	NM_016694	ENSMUSG00000023826	Park2	PRKN	Parkinson disease (autosomal recessive, juvenile) 2, parkin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-136124890-2	chr1	136124790	136124990	+	748.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6293.0	NR_046170	329253.0	Mm.487858	NR_046167	ENSMUSG00000086264	Gm15850	6530439I21	predicted gene 15850	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-59439215-2	chr4	59439115	59439315	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163288)	promoter-TSS (NM_001163288)	-582.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-66136196-3	chr5	66136174	66136374	+	911.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127382, intron 2 of 7)	intron (NM_001127382, intron 2 of 7)	14704.0	NM_001291226	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	1.32549169058754	0.661747960574617	1.37117692134104	1.22008158656627	0.631610425494762	1.05183449048192	0.653628130503226	1.11167348412649	-1.4032283999309	0.364372875769469	0.8601283637491
Merged-chr1-138153310-4	chr1	138153207	138153407	+	906.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001268286, intron 2 of 28)	intron (NM_001268286, intron 2 of 28)	21819.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-74294205-2	chr17	74294105	74294305	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133771, intron 1 of 8)	intron (NM_133771, intron 1 of 8)	658.0	NM_133771	76890.0	Mm.311874	NM_133771	ENSMUSG00000058704	Memo1	0610016J10Rik|D930048L02Rik	mediator of cell motility 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-100076811-2	chr15	100076711	100076911	+	669.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159361, intron 1 of 37)	intron (NM_001159361, intron 1 of 37)	38147.0	NM_001159361	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101271147-1	chr15	101271047	101271247	+	547.0	f1_c57bl6.idr	intron (NM_010444, intron 2 of 6)	intron (NM_010444, intron 2 of 6)	4301.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-40324427-4	chr9	40324341	40324541	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151734, intron 3 of 18)	intron (NR_151734, intron 3 of 18)	-3118.0	NM_001357622	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-45221310-3	chr19	45221211	45221411	+	892.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13925.0	NM_010691	16814.0	Mm.116815	NM_010691	ENSMUSG00000025216	Lbx1	Lbx1h	ladybird homeobox 1	protein-coding	3.05857525352551	3.42355774824568	1.87814540968863	3.42472865671014	3.15379264290968	2.19597133442485	3.17391817381527	2.89230685454694	-0.290024679216327	0.688584244872134	0.996533206832645
Merged-chr11-70239981-4	chr11	70239873	70240073	+	999.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173742)	promoter-TSS (NM_173742)	-121.0	NM_173742	52898.0	Mm.29852	NM_173742	ENSMUSG00000093989	Rnasek	2310033H11Rik|AA571397|D11Bwg0434e	ribonuclease, RNase K	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-120359385-2	chr14	120359285	120359485	+	576.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360376, intron 2 of 8)	B4A|SINE|B4	52933.0	NM_001360376	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-17091457-3	chr7	17091241	17091441	+	861.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310628, intron 2 of 5)	intron (NM_001310628, intron 2 of 5)	17301.0	NM_007676	26436.0	Mm.143686	NM_007676	ENSMUSG00000066760	Psg16	Cea11|PSG|bCEA	pregnancy specific glycoprotein 16	protein-coding	-0.153712525321822	-0.140660194323292	-0.144956389881609	0.006178724304876	-0.152903117120425	0.334552814839436	0.293940344015375	0.142426713702057	2.8775353360226	0.196300724767169	1
Merged-chr3-108962916-2	chr3	108962816	108963016	+	759.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	22359.0	NM_001078646	66715.0	Mm.158124	NM_025723	ENSMUSG00000045662	Henmt1	4921515J06Rik|Hen1|mHEN1	HEN1 methyltransferase homolog 1 (Arabidopsis)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-17348068-4	chr19	17347982	17348182	+	918.68335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010265, intron 1 of 2)	intron (NM_010265, intron 1 of 2)	-8577.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	3.25257040676071	2.02709301427151	4.69725569569015	3.98102157134135	2.66008939067967	2.89084102054355	5.03306701302298	2.9523361010018	-0.0027979982950849	0.997952560792752	0.99945198868042
Merged-chr7-99052606-4	chr7	99052500	99052700	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 6 of 14)	L2a|LINE|L2	88544.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	4.40233241463613	3.58979853716229	4.09910184255712	3.63247805404146	4.04246888205878	3.89878471212907	4.83581365737603	4.33502666332875	0.461219971033237	0.311725244266264	0.813466753570896
Merged-chr8-104632973-2	chr8	104632873	104633073	+	627.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-1652.0	NM_019662	56437.0	Mm.29467	NM_019662	ENSMUSG00000031880	Rrad	REM3|Rad	Ras-related associated with diabetes	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-56575570-4	chr14	56575465	56575665	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145978)	promoter-TSS (NM_001145978)	-54.0	NM_001145978	328417.0	Mm.379357	NM_001145978	ENSMUSG00000054509	Parp4	Adprtl1|C030027K23Rik|E230037B21Rik|Gm743|PARPL|PH5P|VAULT3|VPARP|p193	poly (ADP-ribose) polymerase family, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-58954590-4	chr11	58954479	58954679	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_134309)	promoter-TSS (NR_134309)	-67.0	NR_134309	382522.0	Mm.377898	NR_134309	ENSMUSG00000080712	Hist3h2bb-ps	4930534G10Rik|4933432H21|B2Hist3h2bb|Hist3h2bb|R75370	histone cluster 3, H2bb, pseudogene	pseudo	1.16389761170033	0.83884299149276	2.14855606013592	0.559436927967655	1.05211855873067	0.59022257026835	0.813450671592778	0.78483154981805	-2.02967396147022	0.165595395208719	0.630867977894012
Merged-chr8-46597518-3	chr8	46597415	46597615	+	877.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001184, intron 6 of 14)	RLTR25A|LTR|ERVK	19712.0	NM_001001184	408022.0	Mm.217385	NM_001001184	ENSMUSG00000038225	Primpol	BC065112|Ccdc111	primase and polymerase (DNA-directed)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-132358984-4	chr7	132358885	132359085	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41757.0	NM_029935	77590.0	Mm.213582	NM_029935	ENSMUSG00000030930	Chst15	4631426J05Rik|BRAG|GalNAc4S-6ST|GalNAcS-6ST|MAd5|mKIAA0598	carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-37242996-3	chr9	37242900	37243100	+	841.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145960, intron 1 of 18)	intron (NM_001145960, intron 1 of 18)	12738.0	NM_020258	56857.0	Mm.440037	NM_020258	ENSMUSG00000032122	Slc37a2	G3PP|Slc37a1|cI-2|ci2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-21208428-3	chr12	21208336	21208536	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004364, intron 7 of 26)	intron (NM_001004364, intron 7 of 26)	77848.0	NM_008403	16413.0	Mm.273333	NM_008403	ENSMUSG00000062352	Itgb1bp1	AI449260|AU019480|Icap1	integrin beta 1 binding protein 1	protein-coding	2.81857323135179	2.74507444104258	1.53460900397178	2.88357631591172	3.18800973523058	3.18401106380956	3.16232225749771	2.16479374868617	0.721548072876781	0.353767324639354	0.853132398390271
Merged-chr11-29375874-3	chr11	29375754	29375954	+	790.333374	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176841, intron 2 of 31)	MTD|LTR|ERVL-MaLR	1682.0	NM_176841	108686.0	Mm.338284	NM_176841	ENSMUSG00000032740	Ccdc88a	A430106J12Rik|AI848406|Ape|C130096N06Rik|C330012F17Rik|D130005J21Rik|Girdin|Giv|Grdn|Hkrp1	coiled coil domain containing 88A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-90914163-1	chr8	90914063	90914263	+	620.0	f0_balb.idr	intron (NM_177224, intron 2 of 39)	intron (NM_177224, intron 2 of 39)	-18086.0	NM_001310530	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	1.55345707520037	2.20429488639096	1.84817093290631	1.63161797143408	2.08110836760242	2.95138723034108	1.68887924315265	1.94958088579857	1.10668592993445	0.246450576681264	0.74563204527445
Merged-chr6-148444343-4	chr6	148444260	148444460	+	994.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347518)	promoter-TSS (NM_001347518)	-8.0	NM_001347518	387314.0	Mm.137858	NM_198967	ENSMUSG00000030306	Tmtc1	Arg99|BC023818	transmembrane and tetratricopeptide repeat containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-121260742-2	chr6	121260642	121260842	+	787.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011909, intron 4 of 10)	intron (NM_011909, intron 4 of 10)	14836.0	NM_011909	24110.0	Mm.326911	NM_011909	ENSMUSG00000030107	Usp18	1110058H21Rik|AW047653|UBP43|Ubp15	ubiquitin specific peptidase 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-113730476-2	chr9	113730353	113730553	+	631.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11020.0	NM_001286599	76499.0	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-40923566-1	chr14	40923466	40923666	+	619.0	f0_balb.idr	intron (NM_145928, intron 2 of 8)	intron (NM_145928, intron 2 of 8)	24643.0	NM_001316748	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-20930151-1	chr14	20930051	20930251	+	647.0	f0_balb.idr	intron (NM_009502, intron 1 of 20)	intron (NM_009502, intron 1 of 20)	753.0	NM_009502	22330.0	Mm.279361	NM_009502	ENSMUSG00000021823	Vcl	9430097D22|AA571387|AI462105|AW545629	vinculin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-77459576-3	chr11	77459503	77459703	+	822.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001291190, exon 14 of 14)	3' UTR (NM_001291190, exon 14 of 14)	-4310.0	NM_139129	216961.0	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-71431660-1	chr4	71431560	71431760	+	551.0	f1_balb.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	769233.0	NM_011599	21885.0	Mm.278444	NM_011599	ENSMUSG00000008305	Tle1	C230057C06Rik|Estm14|Grg-1|Grg1|Tle4l	transducin-like enhancer of split 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-65950431-4	chr3	65950328	65950528	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019937, intron 5 of 10)	intron (NM_019937, intron 5 of 10)	7821.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	2.33945836238398	2.72872514024002	2.7268442993241	1.96851695491934	2.1481929830695	2.7489429946371	2.32852011737224	1.36233160710744	-0.522032917746409	0.558520504516518	0.960321604678676
Merged-chr6-142783164-2	chr6	142783064	142783264	+	651.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	21302.0	NM_001145390	330440.0	Mm.484618	NM_001033417	ENSMUSG00000048473	Sult6b2	Gm766	sulfotransferase family 6B, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165885674-4	chr2	165885568	165885768	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252584)	promoter-TSS (NM_001252584)	-830.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	3.9516607552146	2.93004538162694	2.82118974493909	4.61352400925422	2.85103296056164	3.22806276064753	4.19060705969658	3.84811754887674	-0.247301925895573	0.690098135757865	0.996533206832645
Merged-chr1-86477854-2	chr1	86477754	86477954	+	586.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48703.0	NR_153834	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-32912939-3	chr12	32912841	32913041	+	648.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA6|LINE|L1	40848.0	NR_044986	74076.0	Mm.50114	NR_044986	ENSMUSG00000097494	4933406C10Rik	-	RIKEN cDNA 4933406C10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-108650012-2	chr12	108649912	108650112	+	668.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163396, intron 3 of 14)	MLT1A1|LTR|ERVL-MaLR	-8608.0	NR_029771	723909.0		NR_029771	ENSMUSG00000065436	Mir342	Mirn342|mmu-mir-342	microRNA 342	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167640333-2	chr2	167640233	167640433	+	625.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-8328.0	NM_023230	66589.0	Mm.278783	NM_023230	ENSMUSG00000078923	Ube2v1	0610011J09Rik|AI256840|CROC-1|CROC1|D7Bwg1382e|UEV-1	ubiquitin-conjugating enzyme E2 variant 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-56390024-3	chr19	56389934	56390134	+	920.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286552)	promoter-TSS (NM_001286552)	4.0	NM_198059	18175.0	Mm.386769	NM_008733	ENSMUSG00000049134	Nrap	-	nebulin-related anchoring protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-116991589-4	chr4	116991513	116991713	+	820.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009478, intron 7 of 9)	intron (NM_009478, intron 7 of 9)	2800.0	NM_009478	22275.0	Mm.46484	NM_009478	ENSMUSG00000028684	Urod	AI323803|UPD|Uro-d	uroporphyrinogen decarboxylase	protein-coding	-0.591793999918834	-0.941024242466131	-0.950818691171624	-0.952849189655799	-0.95570775612328	-0.93848410230182	-0.950092402506116	-0.532588275370115	0.259581089694713	0.934968613807678	1
Merged-chr8-72312414-1	chr8	72312314	72312514	+	620.0	f1_c57bl6.idr	Intergenic	Intergenic	-6648.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	1.02420581190028	0.476741306848664	0.464487132591101	0.454857348586369	0.440968695523508	1.46096739900752	0.691253266981022	1.5854518826254	2.332110083073	0.175946617637884	0.645775639984829
Merged-chr12-85287199-4	chr12	85287134	85287334	+	657.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TC)n|Simple_repeat|Simple_repeat	-1357.0	NM_172414	72350.0	Mm.158810	NM_172414	ENSMUSG00000045064	Zc2hc1c	2810002I04Rik|AV046379|Fam164c	zinc finger, C2HC-type containing 1C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-95898093-4	chr16	95897987	95898187	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040485, exon 2 of 4)	non-coding (NR_040485, exon 2 of 4)	626.0	NR_040485	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81086811-4	chr10	81086701	81086901	+	841.2708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145365, intron 8 of 11)	B4A|SINE|B4	12071.0	NM_145365	208677.0	Mm.294693	NM_145365	ENSMUSG00000035041	Creb3l3	BC010786|CREB-H|D10Bur1e	cAMP responsive element binding protein 3-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-135628577-4	chr3	135628488	135628688	+	995.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008689, intron 6 of 24)	intron (NM_008689, intron 6 of 24)	62959.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	2.88022728414649	2.86564879119229	3.31888300405163	3.88085943358982	3.44999423242544	3.54454446015441	3.04198350556394	3.4064925917541	0.0993410719418728	0.86577917397022	0.998431161219273
Merged-chr16-30773005-4	chr16	30772882	30773082	+	894.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	173259.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-98268648-4	chr12	98268544	98268744	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008152)	promoter-TSS (NM_008152)	9.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-64400945-4	chr7	64400841	64401041	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028626, intron 2 of 2)	intron (NM_028626, intron 2 of 2)	8319.0	NM_001355124	73724.0	Mm.10093	NM_028626	ENSMUSG00000033429	Mcee	1110007A04Rik	methylmalonyl CoA epimerase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-66982766-2	chr3	66982666	66982866	+	926.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302357)	promoter-TSS (NM_001302357)	-995.0	NM_001302357	20429.0	Mm.39093	NM_013665	ENSMUSG00000027833	Shox2	6330543G17Rik|OG12|Og12x|Prx3|SHOT	short stature homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-70476958-4	chr12	70476890	70477090	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_037248, intron 2 of 4)	intron (NR_037248, intron 2 of 4)	23836.0	NM_028339	72736.0	Mm.204670	NM_028339	ENSMUSG00000021072	Tmx1	2810425A04Rik|AI465319|Txndc1	thioredoxin-related transmembrane protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-87812631-4	chr4	87812498	87812698	+	749.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027326, intron 5 of 10)	intron (NM_027326, intron 5 of 10)	-6275.0	NM_029931	70122.0	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111713179-4	chr12	111713064	111713264	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027404)	promoter-TSS (NM_027404)	92.0	NM_027404	70369.0	Mm.44239	NM_027404	ENSMUSG00000049792	Bag5	1600025G07Rik|4930405J06Rik|Bag-5	BCL2-associated athanogene 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-41741776-3	chr3	41741675	41741875	+	886.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291048)	promoter-TSS (NM_001291048)	739.0	NR_155540	67161.0	Mm.331001	NM_001081411	ENSMUSG00000059834	Sclt1	2610207F23Rik|4931421F20Rik|CAGGS-SB10|Tg(ACTB-sb10)1Dla|Tg(CAG-sb10)1Dla	sodium channel and clathrin linker 1	protein-coding	-1.7024385483431	-1.81249224917775	-1.82134771053534	-1.82862185015837	-1.70038292649591	-1.81057323376012	-1.81934302819017	-1.82731978264371	0.0376840119903864	0.991491645451152	1
Merged-chr14-113683445-2	chr14	113683345	113683545	+	914.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13D3|LTR|ERVK	-1148520.0	NR_045661	75822.0	Mm.410813	NR_045661	ENSMUSG00000115320	4930524C18Rik	-	RIKEN cDNA 4930524C18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4208891-2	chr19	4208791	4208991	+	671.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5347.0	NR_132308	105948585.0	Mm.32518	NR_132308		Gm45928	Clcf1-pold4	predicted gene, 45928	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-108369814-4	chr4	108369708	108369908	+	922.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001099303, intron 2 of 2)	B3|SINE|B2	13847.0	NM_001099303	545667.0	Mm.380025	NM_001099303	ENSMUSG00000059816	Fam159a	Shisal2a	family with sequence similarity 159, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-77629734-2	chr11	77629634	77629834	+	894.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21919.0	NM_144825	216965.0	Mm.340436	NM_144825	ENSMUSG00000017291	Taok1	2810468K05Rik|AU020252|D130018F14Rik|Map3k16|Markk|Psk2|mKIAA1361	TAO kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81329414-2	chr10	81329314	81329514	+	553.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001277265, intron 1 of 2)	intron (NM_001277265, intron 1 of 2)	711.0	NM_001277265	21390.0	Mm.4545	NM_009325	ENSMUSG00000034881	Tbxa2r	TP|TXA2-R	thromboxane A2 receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-82894907-2	chr18	82894807	82895007	+	601.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15972.0	NM_183033	329003.0	Mm.326526	NM_183033	ENSMUSG00000058881	Zfp516	C330029B10Rik|D230016L03|Zfp26l|Znf516|mKIAA0222	zinc finger protein 516	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-74889021-2	chr14	74888921	74889121	+	933.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033439, intron 1 of 19)	intron (NM_001033439, intron 1 of 19)	58856.0	NM_001252132	380916.0	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-37235720-3	chr10	37235616	37235816	+	849.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-96790.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-5301202-4	chr5	5301111	5301311	+	871.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011074, intron 2 of 14)	intron (NM_011074, intron 2 of 14)	-35143.0	NM_001310448	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-27285933-4	chr7	27285820	27286020	+	616.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	27159.0	NM_010950	18223.0	Mm.458153	NM_010950	ENSMUSG00000063160	Numbl	nbl	numb-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115561207-2	chr5	115561106	115561306	+	812.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_007475, exon 4 of 7)	exon (NM_007475, exon 4 of 7)	1739.0	NM_007475	11837.0	Mm.5286	NM_007475	ENSMUSG00000067274	Rplp0	36B4|Arbp|L10E	ribosomal protein, large, P0	protein-coding	1.16759664994518	2.16678184716175	1.01400779593456	2.40732925080249	1.61812447345022	1.50417257138376	1.45451789167302	1.56830801072071	-0.913425762674242	0.428389442151319	0.903416445927044
Merged-chr2-153779048-6	chr2	153778909	153779109	+	891.055542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1870.0	NR_036629	100504221.0	Mm.246778	NM_177849	ENSMUSG00000044083	Efcab8	A630008I04|EG329541	EF-hand calcium binding domain 8	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-11543394-2	chr2	11543294	11543494	+	554.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177758, intron 1 of 14)	B3|SINE|B2	10535.0	NM_001177758	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-47627035-4	chr9	47626926	47627126	+	857.9249880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	96674.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	0.144667543744756	0.16685943771337	0.510581448521477	1.15268142811312	0.441359511157261	0.168480022025365	0.161237231552029	0.487217627928289	-1.53939386010827	0.432543472273739	1
Merged-chr5-77303501-2	chr5	77303401	77303601	+	988.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019836, intron 4 of 6)	B2_Mm1a|SINE|B2	6585.0	NM_019836	56412.0	Mm.129136	NM_019836	ENSMUSG00000036285	Noa1	2610024G14Rik|AU022345|AtNOS1|mAtNOS1	nitric oxide associated 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-123050943-4	chr4	123050857	123051057	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151450, intron 8 of 9)	intron (NR_151450, intron 8 of 9)	34364.0	NR_151450	66966.0	Mm.235030	NM_025873	ENSMUSG00000028653	Trit1	2310075G14Rik|AI314189|AI314635|AV099619|IPPT|IPT|MOD5	tRNA isopentenyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-116788202-4	chr4	116788081	116788281	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146151, intron 4 of 10)	intron (NM_146151, intron 4 of 10)	19378.0	NM_026654	68276.0	Mm.30534	NM_026654	ENSMUSG00000028688	Toe1	4930584N22Rik|4933424D16Rik|AI413517	target of EGR1, member 1 (nuclear)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35088677-2	chr17	35088587	35088787	+	743.916626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178592)	promoter-TSS (NM_178592)	-604.0	NM_178592	193742.0	Mm.43745	NM_178592	ENSMUSG00000007036	Abhd16a	AI326074|Bat-5|Bat5|D17H6S82E|NG26	abhydrolase domain containing 16A	protein-coding	0.626773706837237	0.271418546742235	0.441651282123439	0.259827096397025	0.978852308160977	0.771736709187554	0.266321954164919	0.42720758998986	1.54946526018011	0.399501986710597	1
Merged-chr2-145719718-2	chr2	145719618	145719818	+	936.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NR_033220, intron 2 of 3)	L1_Mur3|LINE|L1	18523.0	NR_033220	408057.0	Mm.486711	NR_033220	ENSMUSG00000087594	BC039771	-	cDNA sequence BC039771	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-5735108-4	chr11	5734978	5735178	+	916.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361588, intron 1 of 6)	intron (NM_001361588, intron 1 of 6)	6098.0	NM_001361590	72046.0	Mm.271657	NM_178623	ENSMUSG00000049680	Urgcp	2010005J08Rik|9130001I21Rik|AW060359|Urg4|mKIAA1507	upregulator of cell proliferation	protein-coding	2.1727240547167	2.31788432638976	1.33670803695151	2.79646483410814	2.08298235895657	2.04038533615604	1.97453291562331	2.66615002878967	-0.0944591207021807	0.919498111167059	0.998431161219273
Merged-chr10-117867486-4	chr10	117867374	117867574	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21500.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-95825922-3	chr16	95825835	95826035	+	745.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	72778.0	NR_040485	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59555008-2	chr15	59554908	59555108	+	841.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026746, intron 4 of 6)	intron (NM_026746, intron 4 of 6)	-93646.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-38666650-3	chr15	38666553	38666753	+	758.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025494, intron 1 of 12)	intron (NM_025494, intron 1 of 12)	4749.0	NM_025494	66335.0	Mm.276618	NM_025494	ENSMUSG00000022295	Atp6v1c1	1700025B18Rik|U13839	ATPase, H+ transporting, lysosomal V1 subunit C1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-65108353-4	chr5	65108269	65108469	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347355, intron 1 of 10)	intron (NM_001347355, intron 1 of 10)	801.0	NM_001347355	71778.0	Mm.10281	NM_175174	ENSMUSG00000054920	Klhl5	1300013C10Rik	kelch-like 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-95614154-4	chr9	95614022	95614222	+	828.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23506.0	NM_029620	76477.0	Mm.46016	NM_029620	ENSMUSG00000015354	Pcolce2	2400001O18Rik|Pcpe2	procollagen C-endopeptidase enhancer 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128491067-2	chr10	128490967	128491167	+	732.833313	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001114096)	TTS (NM_001114096)	1942.0	NM_001317220	17904.0	Mm.337074	NM_010860	ENSMUSG00000090841	Myl6	ESMLC|LC17|LC17-GI|MLC-3|MLC1SM|Myln	myosin, light polypeptide 6, alkali, smooth muscle and non-muscle	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-151087521-2	chr1	151087421	151087621	+	918.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14|LTR|ERV1	-50513.0	NR_038011	402734.0	Mm.337666	NR_038011		C730036E19Rik	lncLSTR	RIKEN cDNA C730036E19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-165701056-4	chr1	165700950	165701150	+	900.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038846, intron 1 of 5)	intron (NM_001038846, intron 1 of 5)	7044.0	NM_001038846	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-134175905-2	chr5	134175805	134176005	+	927.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_033572, intron 1 of 10)	intron (NM_033572, intron 1 of 10)	862.0	NM_033572	94254.0	Mm.29508	NM_033572	ENSMUSG00000061979	Rcc1l	5730496C04Rik|AU019812|Wbscr16	reculator of chromosome condensation 1 like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-102902092-4	chr2	102901992	102902192	+	989.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177785)	promoter-TSS (NM_001177785)	-427.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-33978115-4	chr17	33978036	33978236	+	956.0833130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_004446, intron 2 of 5)	CpG-6269	655.0	NR_004446	630499.0	Mm.440940	NM_001081015		H2-K2	EG630499|Gm7035|H-2K1|H-2K1K|H-2K2|H2-K1	histocompatibility 2, K region locus 2	pseudo	3.53727259090195	3.70705434561519	2.86908039439852	2.51752498050396	2.07240984461508	2.37349417565875	4.49020460341392	1.99520030027299	-0.0114817617542535	0.988575917540001	0.998431161219273
Merged-chr2-164492938-4	chr2	164492829	164493029	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_026797, exon 4 of 4)	3' UTR (NM_026797, exon 4 of 4)	-4596.0	NM_133779	78928.0	Mm.28228	NM_133779	ENSMUSG00000017721	Pigt	2510012P17Rik|4930534E15Rik|CGI-06|NDAP|Ndap7	phosphatidylinositol glycan anchor biosynthesis, class T	protein-coding	4.7494600012417	4.12833501136041	3.9884780359152	5.09462418310859	4.78412035546457	4.49502104137724	4.02010677949592	5.11678631875073	0.115857596757384	0.781272556681261	0.998431161219273
Merged-chr11-83590970-2	chr11	83590870	83591070	+	775.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_009139, intron 1 of 3)	L1MB3|LINE|L1	2117.0	NM_009139	20305.0	Mm.137	NM_009139	ENSMUSG00000018927	Ccl6	MRP-1|Scya6|c10	chemokine (C-C motif) ligand 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-5364220-2	chr8	5364120	5364320	+	553.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4A|LINE|L1	-258933.0	NM_011388	20494.0	Mm.3500	NM_011388	ENSMUSG00000023073	Slc10a2	9130221J18Rik|AI605518|ASBT|IBAT|ISBT	solute carrier family 10, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-122676968-1	chr10	122676868	122677068	+	652.0	f1_balb.idr	Intergenic	B3|SINE|B2	-1794.0	NM_176919	319468.0	Mm.489703	NM_176919	ENSMUSG00000034613	Ppm1h	A430075L18Rik|ARHCL1|C030002B11Rik	protein phosphatase 1H (PP2C domain containing)	protein-coding	-2.18138529563533	-2.15523716995652	-2.1631445789866	-2.16963996020037	-2.05513010215571	-2.15352360143315	-2.16135451490766	-2.16847729006863	0.759018020146679	0.829933115115583	1
Merged-chr17-70999356-4	chr17	70999243	70999443	+	892.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026064, intron 1 of 3)	intron (NM_026064, intron 1 of 3)	-1331.0	NM_001357820	67268.0	Mm.489605	NM_026064	ENSMUSG00000024048	Myl12a	2900073G15Rik|AI838292|C80200	myosin, light chain 12A, regulatory, non-sarcomeric	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-91170756-4	chr10	91170659	91170859	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001283048)	promoter-TSS (NM_001283048)	-209.0	NM_001283048	21917.0	Mm.159684	NM_011605	ENSMUSG00000019961	Tmpo	5630400D24Rik|AI195756|AI606875|AW214352|AW547477|LAP2|TP	thymopoietin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-129058215-4	chr6	129058100	129058300	+	845.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_153094)	TTS (NM_153094)	12299.0	NM_153094	232408.0	Mm.259262	NM_153094	ENSMUSG00000030154	Klrb1f	A630024B12Rik|Nkr-p1f|Nkrp1-f|Nkrp1f	killer cell lectin-like receptor subfamily B member 1F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-88193724-2	chr6	88193624	88193824	+	798.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355253)	promoter-TSS (NM_001355253)	-167.0	NM_001355253	14461.0	Mm.491156	NM_008090	ENSMUSG00000015053	Gata2	Gata-2	GATA binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-12015771-2	chr19	12015671	12015871	+	912.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20969.0	NM_146680	258675.0	Mm.271517	NM_146680	ENSMUSG00000067529	Olfr1423	MOR239-3	olfactory receptor 1423	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6283947-2	chr19	6283847	6284047	+	645.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010119, intron 2 of 4)	B4A|SINE|B4	7051.0	NM_010119	13660.0	Mm.30169	NM_010119	ENSMUSG00000024772	Ehd1	AA409636|Past1|RME-1	EH-domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-102802100-2	chr4	102802000	102802200	+	849.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_144906, intron 1 of 23)	intron (NM_144906, intron 1 of 23)	41965.0	NM_001285859	73094.0	Mm.54201	NM_144906	ENSMUSG00000028524	Sgip1	3110007P09Rik|SGIP1alpha|gag	SH3-domain GRB2-like (endophilin) interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-75779076-2	chr2	75779065	75779265	+	670.791626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-53012.0	NM_172666	228061.0	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	-2.18243820993087	-2.15538464093652	-2.16356586349869	-2.17028616330028	-2.18053909940952	-2.15361173587851	-2.16171381403791	-2.0403552525549	0.759018020146679	0.829933115115583	1
Merged-chr14-103421462-4	chr14	103421371	103421571	+	835.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74671.0	NM_207215	105689.0	Mm.6478	NM_207215	ENSMUSG00000033004	Mycbp2	AU023734|AW107953|AW546647|C130061D10Rik|Pam|Phr1|R75243	MYC binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-102387528-2	chr15	102387428	102387628	+	872.474976	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-18788.0	NM_013672	20683.0	Mm.4618	NM_013672	ENSMUSG00000001280	Sp1	1110003E12Rik|AA450830|AI845540|Sp1-1	trans-acting transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-17201197-7	chr16	17201072	17201272	+	990.5714109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009456, intron 1 of 3)	CpG	320.0	NM_009456	22195.0	Mm.3074	NM_009456	ENSMUSG00000038965	Ube2l3	C79827|UbcM4|Ubce7	ubiquitin-conjugating enzyme E2L 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-14346245-4	chr14	14346153	14346353	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008369)	promoter-TSS (NM_008369)	-242.0	NM_008369	16188.0	Mm.425857	NM_008369	ENSMUSG00000068758	Il3ra	CD123|CDw123|SUT-1	interleukin 3 receptor, alpha chain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131072623-3	chr1	131072523	131072723	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008551, intron 1 of 9)	intron (NM_008551, intron 1 of 9)	25220.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	3.63497305872856	2.96025449134975	4.73409503125887	2.88750598857198	5.86107180133677	5.64022546977659	5.74634868237567	5.17441407083052	2.25410678040293	1.72202794190247e-07	1.39600616533417e-05
Merged-chr14-56019551-2	chr14	56019451	56019651	+	660.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008570, exon 4 of 5)	exon (NM_008570, exon 4 of 5)	1587.0	NM_008570	17224.0	Mm.201549	NM_008570	ENSMUSG00000022227	Mcpt1	AV080368|Mcp-1	mast cell protease 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-29592811-4	chr2	29592704	29592904	+	805.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26916.0	NM_054050	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-44406492-2	chr19	44406392	44406592	+	599.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_009127, exon 2 of 6)	exon (NM_009127, exon 2 of 6)	1217.0	NM_009127	20249.0	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-42349869-4	chr6	42349761	42349961	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011777)	promoter-TSS (NM_011777)	33.0	NM_001289618	22793.0	Mm.282303	NM_011777	ENSMUSG00000029860	Zyx	9530098H06Rik|R75157	zyxin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4587827-3	chr16	4587720	4587920	+	689.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6893.0	NM_031184	83396.0	Mm.134072	NM_031184	ENSMUSG00000014303	Glis2	Gli5|Klf16|Nkl	GLIS family zinc finger 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150630820-2	chr4	150630720	150630920	+	558.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355737, intron 8 of 8)	intron (NM_001355737, intron 8 of 8)	21354.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-17966625-2	chr14	17966525	17966725	+	958.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113417, intron 4 of 9)	intron (NM_001113417, intron 4 of 9)	-15019.0	NM_009380	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-34210189-4	chr10	34210077	34210277	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2626.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-18917534-4	chr2	18917426	18917626	+	837.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008845, intron 1 of 9)	intron (NM_008845, intron 1 of 9)	80595.0	NM_008845	18718.0	Mm.313977	NM_008845	ENSMUSG00000026737	Pip4k2a	AW742916|Pip5k2a	phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-113152721-2	chr12	113152713	113152913	+	822.916626	f0_balb.idr|f1_balb.idr	intron (NM_007763, intron 1 of 4)	intron (NM_007763, intron 1 of 4)	801.0	NM_007763	12925.0	Mm.272368	NM_007763	ENSMUSG00000006360	Crip1	CRHP|CRP1|Crip	cysteine-rich protein 1 (intestinal)	protein-coding	-1.84303373260285	-1.81303463126392	-1.82210660711932	-1.82955859819738	-1.84092785115721	-1.81106869625141	-1.8200529106377	-1.54273750312762	1.50114612804783	0.670102668014672	1
Merged-chr15-66271661-1	chr15	66271561	66271761	+	633.0	f1_c57bl6.idr	intron (NM_152923, intron 1 of 14)	intron (NM_152923, intron 1 of 14)	14563.0	NM_152923	110862.0	Mm.255585	NM_152923	ENSMUSG00000056258	Kcnq3	-	potassium voltage-gated channel, subfamily Q, member 3	protein-coding	1.01262742725337	2.14249066754262	2.94843953028491	2.69357872139916	1.02302986287433	1.1720814436914	2.07615684263715	3.71477640303111	0.227216990085032	0.909329634452365	0.998431161219273
Merged-chr15-83294017-2	chr15	83293917	83294117	+	672.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42243.0	NM_001004150	239559.0	Mm.323805	NM_001004150	ENSMUSG00000047878	A4galt	-	alpha 1,4-galactosyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91917413-2	chr2	91917313	91917513	+	791.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_172669, exon 18 of 18)	exon (NM_172669, exon 18 of 18)	-4776.0	NM_007699	12672.0	Mm.330405	NM_007699	ENSMUSG00000040495	Chrm4	Chrm-4|M4	cholinergic receptor, muscarinic 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-152743693-2	chr2	152743593	152743793	+	757.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7442.0	NM_001355113	15901.0	Mm.444	NM_010495	ENSMUSG00000042745	Id1	AI323524|D2Wsu140e|Idb1|bHLHb24	inhibitor of DNA binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116852497-4	chr11	116852418	116852618	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011358, intron 1 of 2)	CpG	576.0	NM_011358	20382.0	Mm.21841	NM_011358	ENSMUSG00000034120	Srsf2	D11Wsu175e|MRF-1|Pr264|SC35|Sfrs10|Sfrs2	serine/arginine-rich splicing factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45897430-3	chr7	45897335	45897535	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291064)	promoter-TSS (NM_001291064)	366.0	NM_144801	70209.0	Mm.163766	NM_144801	ENSMUSG00000002781	Tmem143	2310076O21Rik|AI481604	transmembrane protein 143	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-54458380-3	chr11	54458270	54458470	+	775.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173753, intron 1 of 17)	intron (NM_173753, intron 1 of 17)	20191.0	NM_173753	216742.0	Mm.34087	NM_173753	ENSMUSG00000035992	Fnip1	A730024A03Rik|AI838773|AW557298	folliculin interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-106336744-2	chr8	106336644	106336844	+	812.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_126090)	TTS (NR_126090)	1244.0	NM_021491	58994.0	Mm.23298	NM_021491	ENSMUSG00000031906	Smpd3	4631433G07Rik|AI427456|AW537966|fro|nSMase2	sphingomyelin phosphodiesterase 3, neutral	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-122444111-2	chr14	122444011	122444211	+	592.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_033325, intron 1 of 2)	(CA)n|Simple_repeat|Simple_repeat	7004.0	NR_033325	328479.0	Mm.86095	NR_033325	ENSMUSG00000064052	Gm5089	6530402A20|C030005G22Rik|EG328479	predicted gene 5089	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91963734-4	chr2	91963667	91963867	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138306)	promoter-TSS (NM_138306)	-204.0	NM_138306	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-138172327-2	chr1	138172227	138172427	+	733.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001268286, intron 2 of 28)	intron (NM_001268286, intron 2 of 28)	2799.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-45059764-2	chr2	45059664	45059864	+	896.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355291, intron 2 of 9)	intron (NM_001355291, intron 2 of 9)	-36587.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-30048408-3	chr6	30048340	30048540	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164226, intron 1 of 11)	CpG	452.0	NM_001164227	18181.0	Mm.259258	NM_010938	ENSMUSG00000058440	Nrf1	C87038|D6Ertd415e	nuclear respiratory factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3852522-4	chr19	3852364	3852564	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271496, intron 1 of 11)	CpG	691.0	NR_073190	12660.0	Mm.225505	NM_013490	ENSMUSG00000024843	Chka	CK|CK/EK-alpha|Chetk-alpha|Chk|ChoK|EK|EtnK-alpha	choline kinase alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-7221646-4	chr9	7221562	7221762	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37157.0	NM_029775	76863.0	Mm.27293	NM_029775	ENSMUSG00000032002	Dcun1d5	3110001A18Rik|4833420K19Rik|AW060460|D430047L21Rik	DCN1, defective in cullin neddylation 1, domain containing 5 (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-22105642-3	chr16	22105586	22105786	+	699.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183029, intron 2 of 15)	B3|SINE|B2	57613.0	NM_183029	319765.0	Mm.489442	NM_183029	ENSMUSG00000033581	Igf2bp2	C330012H03Rik|IMP-2|Imp2|Neilsen	insulin-like growth factor 2 mRNA binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80742399-4	chr10	80742298	80742498	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007460)	promoter-TSS (NM_007460)	-123.0	NM_007460	11776.0	Mm.27082	NM_007460	ENSMUSG00000020198	Ap3d1	AA407035|Ap3d|Bolvr|mBLVR1|mh|mocha	adaptor-related protein complex 3, delta 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-83423239-4	chr18	83423145	83423345	+	971.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-97361.0	NR_045361	70960.0	Mm.410834	NR_045361		4921531P14Rik	1700108N05Rik	RIKEN cDNA 4921531P14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-31233541-4	chr16	31233422	31233622	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32284.0	NM_030138	78618.0	Mm.274646	NM_030138	ENSMUSG00000049076	Acap2	4832442G16|9530039J15Rik|CNT-B2|Centb2|mKIAA0041	ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-142394909-4	chr3	142394791	142394991	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001190854, intron 1 of 12)	intron (NM_001190854, intron 1 of 12)	805.0	NM_001190853	56376.0	Mm.117709	NM_019808	ENSMUSG00000028273	Pdlim5	1110001A05Rik|AI987914|C87059|Enh|Enh1|Enh2|Enh3|LIM	PDZ and LIM domain 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106084307-4	chr11	106084202	106084402	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011947)	promoter-TSS (NM_011947)	-600.0	NM_011947	26406.0	Mm.27041	NM_011947	ENSMUSG00000020700	Map3k3	AW548911|MAPKKK3|Mekk3|mKIAA4031	mitogen-activated protein kinase kinase kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-26362290-4	chr15	26362191	26362391	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310774, intron 2 of 2)	intron (NM_001310774, intron 2 of 2)	53243.0	NM_001310774	211147.0	Mm.54257	NM_177597	ENSMUSG00000022269	March11	9630025C22	membrane-associated ring finger (C3HC4) 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-105262182-2	chr11	105262082	105262282	+	825.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361996, intron 14 of 19)	intron (NM_001361996, intron 14 of 19)	-30464.0	NM_008626	17534.0	Mm.235616	NM_008626	ENSMUSG00000020695	Mrc2	Endo180|mKIAA0709|uPARAP	mannose receptor, C type 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-57622976-4	chr8	57622879	57623079	+	752.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167981, intron 1 of 11)	ORR1D1|LTR|ERVL-MaLR	-28774.0	NR_040698	100502619.0	Mm.393851	NR_040698		AW046200	-	expressed sequence AW046200	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-120042960-4	chr6	120042850	120043050	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4295.0	NM_001185021	232341.0	Mm.333349	NM_198703	ENSMUSG00000045962	Wnk1	6430573H23Rik|EG406236|Hsn2|Prkwnk1|mKIAA0344	WNK lysine deficient protein kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-7374703-2	chr7	7374597	7374797	+	759.0	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	24930.0	NM_001105062	100042591.0	Mm.469891	NM_001105062	ENSMUSG00000096373	Vmn2r31	-	vomeronasal 2, receptor 31	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-86889662-2	chr12	86889562	86889762	+	971.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4848.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-79506326-2	chr10	79506226	79506426	+	631.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24764.0	NR_105874	102465548.0		NR_105874	ENSMUSG00000098414	Mir6909	Gm27727|mmu-mir-6909	microRNA 6909	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45019103-6	chr7	45019003	45019203	+	855.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360132)	promoter-TSS (NM_001360132)	-367.0	NM_001360132	20130.0	Mm.389894	NM_009101	ENSMUSG00000038387	Rras	AI573426	related RAS viral (r-ras) oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-4454778-2	chr2	4454678	4454878	+	560.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 2 of 23)	intron (NM_001177843, intron 2 of 23)	53802.0	NM_001177843	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-20021380-1	chr17	20021280	20021480	+	567.0	f1_balb.idr	Intergenic	L1Md_F2|LINE|L1	26825.0	NM_001104566	22313.0	Mm.379039	NM_001104566	ENSMUSG00000090315	Vmn2r104	V2r7	vomeronasal 2, receptor 104	protein-coding	1.14608956449808	1.73511839859854	2.12412633434721	1.49406402516194	1.62912248598047	0.850668747998568	0.83303734188749	0.817598044972121	-2.04991581346562	0.134216291055179	0.571939985148542
Merged-chr7-16781275-4	chr7	16781190	16781390	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009201)	promoter-TSS (NM_009201)	-56.0	NM_009201	20514.0	Mm.1056	NM_009201	ENSMUSG00000001918	Slc1a5	AAAT|ASCT2|ATBO|M7V1|M7VS1|R16|RDRC|Slc1a7	solute carrier family 1 (neutral amino acid transporter), member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33934915-4	chr16	33934808	33935008	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 10 of 14)	intron (NM_001145884, intron 10 of 14)	32130.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-35478376-3	chr13	35478283	35478483	+	849.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-181479.0	NM_009881	12593.0	Mm.29002	NM_009881	ENSMUSG00000059288	Cdyl	AI325931	chromodomain protein, Y chromosome-like	protein-coding	-1.06997269762433	-1.30473905204845	-1.3145270772132	-1.32256725251374	-1.06385251204029	-1.30261794616352	-1.3123112828633	-1.32112806497905	0.0394047164033882	0.991001358494878	1
Merged-chr3-95952844-1	chr3	95952744	95952944	+	638.5	f1_c57bl6.idr	Intergenic	Intergenic	23587.0	NM_023210	66471.0	Mm.218657	NM_023210	ENSMUSG00000015749	Anp32e	2810018A15Rik|AI047746|AI326868|CPD1|LANP-L|LANPL|mLANP-L	acidic (leucine-rich) nuclear phosphoprotein 32 family, member E	protein-coding	1.20687288605744	0.976183282459277	0.800473081161074	0.297839094403283	0.451546675131799	0.314520278000454	0.306163579823796	0.298974543318349	-3.61827682301204	0.0548130633100541	1
Merged-chr19-10512427-2	chr19	10512327	10512527	+	579.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025333, intron 3 of 3)	B2_Mm1t|SINE|B2	12782.0	NM_025333	66072.0	Mm.180063	NM_025333	ENSMUSG00000024668	Sdhaf2	0610038F07Rik|AA407634|AW049997	succinate dehydrogenase complex assembly factor 2	protein-coding	-0.266198496349743	-0.234014181802901	-0.727414817174231	-0.729897916026714	-0.73339962586182	-0.723462462449386	-0.726704207376621	-0.729464427181164	-3.17756828190949	0.272928576896612	1
Merged-chr2-166032739-2	chr2	166032639	166032839	+	676.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008679, intron 1 of 22)	Lx5|LINE|L1	40102.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-67352600-4	chr17	67352489	67352689	+	994.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	1870.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-26824101-2	chr10	26824001	26824201	+	652.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_176837, intron 1 of 14)	intron (NM_176837, intron 1 of 14)	51589.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-55475366-2	chr13	55475266	55475466	+	543.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_019813, exon 12 of 14)	exon (NM_019813, exon 12 of 14)	2410.0	NR_105909	102465569.0		NR_105909	ENSMUSG00000098341	Mir6944	Gm27710|mmu-mir-6944	microRNA 6944	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-116237735-4	chr8	116237627	116237827	+	772.94165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-267288.0	NM_029297	75465.0	Mm.23114	NM_029297	ENSMUSG00000034467	Dynlrb2	1700009A04Rik|DNLC2B|Dncl2b	dynein light chain roadblock-type 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133213017-2	chr4	133212895	133213095	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008154)	promoter-TSS (NM_008154)	-459.0	NM_008154	14748.0	Mm.4721	NM_008154	ENSMUSG00000049649	Gpr3	Gpcr20|Gpcr21|Gpcr3	G-protein coupled receptor 3	protein-coding	1.75953542437369	2.99025168443232	3.42016438785383	2.91097534625953	2.96234811812992	3.22370874616822	3.20872534112809	3.34391386930723	0.506643596858716	0.462144694193538	0.921194606787634
Merged-chr3-88913931-4	chr3	88913824	88914024	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144898)	promoter-TSS (NM_144898)	26.0	NM_144898	229524.0	Mm.440405	NM_144898	ENSMUSG00000068922	Msto1	BC008103|mst	misato 1, mitochondrial distribution and morphology regulator	protein-coding	4.23220978325735	4.94986473727222	4.71344111878594	5.04060341700006	4.31445464459059	4.64552113716821	5.06546910702107	4.85729990523506	-0.0217458730335302	0.952654730060759	0.998431161219273
Merged-chr1-105993399-4	chr1	105993312	105993512	+	994.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122675, intron 1 of 12)	intron (NM_001122675, intron 1 of 12)	3006.0	NM_001122675	227449.0	Mm.210188	NM_001122675	ENSMUSG00000038866	Zcchc2	9930114B20Rik|AW212015	zinc finger, CCHC domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-59907183-4	chr1	59907080	59907280	+	957.6124880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-5826.0	NM_001037725	72750.0	Mm.258250	NM_001037725	ENSMUSG00000041040	Fam117b	2810425F24Rik|6330416D14Rik|Als2cr13	family with sequence similarity 117, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-94429429-2	chr8	94429329	94429529	+	749.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5674.0	NR_015514	320377.0	Mm.486022	NR_015514		9330175E14Rik	A630085K21	RIKEN cDNA 9330175E14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-22118261-2	chr16	22118161	22118361	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183029, intron 2 of 15)	intron (NM_183029, intron 2 of 15)	45038.0	NM_183029	319765.0	Mm.489442	NM_183029	ENSMUSG00000033581	Igf2bp2	C330012H03Rik|IMP-2|Imp2|Neilsen	insulin-like growth factor 2 mRNA binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-153332536-3	chr1	153332441	153332641	+	659.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010683, exon 1 of 28)	5' UTR (NM_010683, exon 1 of 28)	245.0	NM_010683	226519.0	Mm.1249	NM_010683	ENSMUSG00000026478	Lamc1	Lamb2	laminin, gamma 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126928049-2	chr8	126927949	126928149	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17872.0	NM_024214	67952.0	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-109371327-2	chr11	109371227	109371427	+	679.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010303, intron 2 of 3)	intron (NM_010303, intron 2 of 3)	-7673.0	NR_038097	100036768.0	Mm.467767	NR_038097	ENSMUSG00000056687	Gm11696	-	predicted gene 11696	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-116227878-4	chr6	116227783	116227983	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026585, intron 15 of 30)	intron (NM_026585, intron 15 of 30)	19850.0	NM_026585	28006.0	Mm.28524	NM_026585	ENSMUSG00000024104	Washc2	A130095H06|C530005J20Rik|D6Wsu116e|Fam21	WASH complex subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-25358115-4	chr15	25358021	25358221	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	55643.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59655635-2	chr15	59655535	59655735	+	693.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_144549, exon 3 of 3)	3' UTR (NM_144549, exon 3 of 3)	6981.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-132799895-3	chr7	132799799	132799999	+	679.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_212473, intron 1 of 4)	intron (NM_212473, intron 1 of 4)	-12964.0	NM_175268	77938.0	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118488408-4	chr9	118488294	118488494	+	617.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10205.0	NM_010136	13813.0	Mm.200692	NM_010136	ENSMUSG00000032446	Eomes	C77258|TBR-2|Tbr2	eomesodermin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125490102-1	chr6	125490002	125490202	+	666.666687	f0_balb.idr	intron (NM_007657, intron 1 of 7)	intron (NM_007657, intron 1 of 7)	4658.0	NM_007657	12527.0	Mm.210676	NM_007657	ENSMUSG00000030342	Cd9	Tspan29	CD9 antigen	protein-coding	-0.719035798507251	-1.16449571712793	-1.17514211765492	-1.1838873880354	-1.18865077678778	-1.16218859772121	-1.00521552208443	-1.18232198881852	-1.39506443050583	0.674342714648981	1
Merged-chr12-112673093-4	chr12	112673002	112673202	+	989.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001331107, intron 1 of 13)	intron (NM_001331107, intron 1 of 13)	1174.0	NM_001165894	11651.0	Mm.6645	NM_009652	ENSMUSG00000001729	Akt1	Akt|LTR-akt|PKB|PKB/Akt|PKBalpha|Rac	thymoma viral proto-oncogene 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-34634669-5	chr5	34634633	34634833	+	852.1400150000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026660, intron 8 of 12)	intron (NM_026660, intron 8 of 12)	2479.0	NM_001356978	68294.0	Mm.34564	NM_026660	ENSMUSG00000001082	Mfsd10	0610009O03Rik|Tetran	major facilitator superfamily domain containing 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-32726342-2	chr5	32726228	32726428	+	784.916687	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	20014.0	NM_001347332	320951.0	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171502831-9	chr1	171502670	171502870	+	988.9021	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019484)	promoter-TSS (NM_019484)	-708.0	NM_019484	56009.0	Mm.389208	NM_019484	ENSMUSG00000060244	Alyref2	C130042O11Rik|REF2|Refbp2	Aly/REF export factor 2	protein-coding	3.97283498339822	5.04191176942509	6.02342770630431	3.40494431803158	3.51417579625149	5.25872078816139	4.9626826338792	4.08724081746807	-0.433592380137544	0.589616678293192	0.968907675192219
Merged-chr15-76246806-4	chr15	76246724	76246924	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023168)	promoter-TSS (NM_023168)	17.0	NM_023168	66168.0	Mm.41665	NM_023168	ENSMUSG00000022564	Grina	1110025J15Rik|Lag|Tmbim3	glutamate receptor, ionotropic, N-methyl D-aspartate-associated protein 1 (glutamate binding)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-34592297-1	chr15	34592197	34592397	+	610.0	f1_balb.idr	intron (NM_145469, intron 6 of 10)	L1_Mus2|LINE|L1	-82776.0	NR_045883	71637.0	Mm.410827	NR_045883	ENSMUSG00000115526	4930413F20Rik	-	RIKEN cDNA 4930413F20 gene	ncRNA	1.09881707934004	1.24408192810994	0.925261064817446	0.902023589525144	2.14482342205126	2.00097486662695	1.62086304136819	2.96156787893932	4.22177964470034	0.00150885852427293	0.02715492686134
Merged-chr4-3052578-2	chr4	3052478	3052678	+	913.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-119505.0	NM_001167534	100312470.0	Mm.480297	NM_001167534	ENSMUSG00000115072	Vmn1r2	Gm11776	vomeronasal 1 receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5819538-3	chr19	5819359	5819559	+	847.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16787.0	NR_002847	72289.0	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19813727-4	chr7	19813641	19813841	+	812.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033601, intron 2 of 8)	intron (NM_033601, intron 2 of 8)	9014.0	NM_033601	12051.0	Mm.439658	NM_033601	ENSMUSG00000053175	Bcl3	AI528691|Bcl-3	B cell leukemia/lymphoma 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-92668105-2	chr7	92668005	92668205	+	760.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029078, intron 1 of 15)	intron (NM_029078, intron 1 of 15)	1807.0	NM_029078	74737.0	Mm.288645	NM_029078	ENSMUSG00000041328	Pcf11	2500001H09Rik|5730417B17Rik|C77803	PCF11 cleavage and polyadenylation factor subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-31031839-4	chr8	31031746	31031946	+	953.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57681.0	NM_025869	66959.0	Mm.23916	NM_025869	ENSMUSG00000039661	Dusp26	2310043K02Rik|Skrp3	dual specificity phosphatase 26 (putative)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25753705-2	chr7	25753605	25753805	+	668.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360789, intron 1 of 14)	intron (NM_001360789, intron 1 of 14)	1054.0	NM_144922	232989.0	Mm.254223	NM_144922	ENSMUSG00000040725	Hnrnpul1	E130317O14Rik|E1B-AP5|E1BAP5|Hnrnpul|Hnrpul1	heterogeneous nuclear ribonucleoprotein U-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-114648662-4	chr9	114648566	114648766	+	847.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8466.0	NM_153585	78893.0	Mm.283708	NM_153585	ENSMUSG00000056167	Cnot10	2600001P13Rik	CCR4-NOT transcription complex, subunit 10	protein-coding	3.82681649911267	4.49983341930478	5.31823103201709	3.90978650172489	3.20432382505786	2.83717119101125	4.39076259063554	2.4425102312828	-1.47233772631332	0.0121952274862902	0.125481073907763
Merged-chr4-14960977-2	chr4	14960877	14961077	+	642.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178617, intron 10 of 12)	intron (NM_178617, intron 10 of 12)	30336.0	NM_001243100	100038514.0	Mm.331495	NM_001243100		Gm11837	-	predicted gene 11837	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-54395310-1	chr14	54395210	54395410	+	731.0	f1_balb.idr	intron (NM_011405, intron 4 of 11)	intron (NM_011405, intron 4 of 11)	14162.0	NM_001253680	20540.0	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-37073026-2	chr10	37072926	37073126	+	624.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	65900.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-103754815-4	chr5	103754710	103754910	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080798, intron 1 of 19)	intron (NM_001080798, intron 1 of 19)	237.0	NM_001080798	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-11455158-2	chr16	11455058	11455258	+	733.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028964, intron 13 of 20)	intron (NM_028964, intron 13 of 20)	49510.0	NM_001290148	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-101158711-2	chr4	101158611	101158811	+	604.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146145, intron 19 of 24)	intron (NM_146145, intron 19 of 24)	89673.0	NM_183024	242570.0	Mm.185636	NM_183024	ENSMUSG00000035275	Raver2	A430091O22Rik	ribonucleoprotein, PTB-binding 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-47738922-4	chr9	47738811	47739011	+	907.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	79297.0	NR_046048	100038460.0	Mm.447649	NR_046048		Gm10677	-	predicted gene 10677	ncRNA	1.35944234805577	0.385467734205279	0.741348225541896	0.369032228156265	0.667702138734605	0.387535865457927	1.13026961475147	0.370294529857622	-0.52997483783845	0.769587155343675	1
Merged-chr6-71908976-5	chr6	71908826	71909026	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009088)	promoter-TSS (NM_009088)	-127.0	NM_009088	20019.0	Mm.135581	NM_009088	ENSMUSG00000049553	Polr1a	194kDa|2900087K15Rik|3010014K16Rik|RPA194|Rpo1-4|mRPA1	polymerase (RNA) I polypeptide A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-94497600-2	chr16	94497500	94497700	+	999.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_007834)	TTS (NM_007834)	29029.0	NM_007834	13185.0	Mm.7472	NM_007834	ENSMUSG00000022898	Dscr3	AW538125|Dcra	DSCR3 arrestin fold containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19210873-4	chr7	19210766	19210966	+	756.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-1672.0	NM_175668	319197.0	Mm.135984	NM_175668	ENSMUSG00000044317	Gpr4	-	G protein-coupled receptor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80999314-2	chr10	80999214	80999414	+	876.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010319, intron 1 of 3)	intron (NM_010319, intron 1 of 3)	2051.0	NM_001038655	14708.0	Mm.222496	NM_010319	ENSMUSG00000048240	Gng7	AI840417	guanine nucleotide binding protein (G protein), gamma 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-116137787-4	chr9	116137584	116137784	+	900.8250119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029575, intron 1 of 6)	intron (NM_029575, intron 1 of 6)	37679.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-5508010-2	chr5	5507910	5508110	+	963.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_022890, exon 4 of 4)	exon (NM_022890, exon 4 of 4)	6779.0	NM_001193660	64945.0	Mm.40132	NM_022890	ENSMUSG00000046798	Cldn12	-	claudin 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46862890-2	chr19	46862790	46862990	+	860.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001102471, intron 4 of 6)	intron (NM_001102471, intron 4 of 6)	99461.0	NM_029810	76952.0	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-47232344-4	chr13	47232226	47232426	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146042, intron 4 of 7)	intron (NM_146042, intron 4 of 7)	38323.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	6.55864248258716	6.71258719044954	7.21332875696887	6.37067476936716	6.5986178963456	6.56137672098481	6.93954749867368	6.27097279669322	-0.144731142788872	0.518165660931832	0.947641799425091
Merged-chr9-21243459-2	chr9	21243359	21243559	+	767.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_053190, exon 3 of 3)	3' UTR (NM_053190, exon 3 of 3)	-4127.0	NM_001110306	50868.0	Mm.248266	NM_016679	ENSMUSG00000003308	Keap1	INRF2|mKIAA0132	kelch-like ECH-associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-110780045-3	chr5	110779907	110780107	+	920.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_152254)	TTS (NR_152254)	589.0	NM_019700	56361.0	Mm.23528	NM_019700	ENSMUSG00000029507	Pus1	A730013B20Rik|MPUS1|mPus1p	pseudouridine synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-81137600-4	chr13	81137511	81137711	+	883.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 87 of 89)	intron (NM_054053, intron 87 of 89)	173537.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117336923-2	chr8	117336823	117337023	+	620.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	-12247.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141138620-4	chr4	141138516	141138716	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001277195, intron 1 of 3)	intron (NM_001277195, intron 1 of 3)	1180.0	NR_102344	213491.0	Mm.332006	NM_174996	ENSMUSG00000040842	Szrd1	1110022I03|D4Ertd22e	SUZ RNA binding domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-17700917-1	chr12	17700817	17701017	+	616.0	f1_c57bl6.idr	intron (NM_016677, intron 1 of 3)	intron (NM_016677, intron 1 of 3)	10108.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	-1.50874880059862	-1.47511716453926	-1.4852876488768	-1.49364198752927	-1.50638792193216	-0.992828729615453	-1.48298527415345	-1.4921465649048	2.3185461113984	0.50391666537493	1
Merged-chr9-108443532-4	chr9	108443427	108443627	+	950.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004192, intron 2 of 3)	intron (NM_001004192, intron 2 of 3)	7045.0	NM_001004192	434439.0	Mm.78372	NM_001004192	ENSMUSG00000050641	BC048562	-	cDNA sequence BC048562	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-19926740-4	chr11	19926650	19926850	+	964.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033523, intron 1 of 5)	intron (NM_033523, intron 1 of 5)	2308.0	NM_033523	114716.0	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding	3.28754842346244	2.700938515369	2.60492001538737	3.7211034673207	3.38328464171663	3.25470446174911	4.11460983689615	3.23853911510308	0.605954796506317	0.319944276921926	0.822459241788873
Merged-chr17-47766165-4	chr17	47766056	47766256	+	794.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161723, intron 1 of 8)	intron (NM_001161723, intron 1 of 8)	-19588.0	NM_011549	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	1.41978452810696	0.610177161563277	1.13739188836189	1.2213698499119	0.573336483509212	0.612994707104743	1.68442995770667	0.589361802008923	-0.555369430968349	0.735539702072929	0.998431161219273
Merged-chr7-127014540-4	chr7	127014428	127014628	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080638)	promoter-TSS (NM_080638)	66.0	NM_080638	78388.0	Mm.228797	NM_080638	ENSMUSG00000030681	Mvp	2310009M24Rik|LRP|VAULT1	major vault protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-145198510-4	chr7	145198462	145198662	+	900.2333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132643, intron 19 of 22)	intron (NR_132643, intron 19 of 22)	9557.0	NR_033626	100040049.0	Mm.102235	NR_033626	ENSMUSG00000109305	1810010D01Rik	Gm2572	RIKEN cDNA 1810010D01 gene	ncRNA	0.857533843921141	0.299103066842946	0.893219024530247	0.29018320284456	0.412969122285075	0.300248971136025	0.714248708455403	0.290856482399838	-1.31236132820033	0.501618603001237	1
Merged-chr5-137523835-2	chr5	137523735	137523935	+	593.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_031408, exon 17 of 24)	exon (NM_031408, exon 17 of 24)	4955.0	NM_031408	57330.0	Mm.268344	NM_031408	ENSMUSG00000029714	Gigyf1	Perq1|mKIAA4110	GRB10 interacting GYF protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-163758015-4	chr1	163757916	163758116	+	997.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21567.0	NM_001305643	16579.0	Mm.4651	NM_010629	ENSMUSG00000026585	Kifap3	KAP-3|KAP3|SMAP	kinesin-associated protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-69556926-4	chr5	69556828	69557028	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172711)	promoter-TSS (NM_172711)	4.0	NM_001310631	231279.0	Mm.21105	NM_172711	ENSMUSG00000029208	Guf1	4631409J12|AA407526|EF-4	GUF1 homolog, GTPase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35896844-3	chr17	35896778	35896978	+	790.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001142744)	TTS (NM_001142744)	500.0	NM_001033630	69662.0	Mm.260159	NM_001033630	ENSMUSG00000050705	2310061I04Rik	-	RIKEN cDNA 2310061I04 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-61409856-4	chr3	61409766	61409966	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45359.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-108444581-4	chr6	108444442	108444642	+	754.158325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 44 of 61)	intron (NM_010585, intron 44 of 61)	-45201.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-25319232-1	chr10	25319132	25319332	+	940.0	f0_balb.idr	Intergenic	Intergenic	-20069.0	NM_018747	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	-0.811871916059096	-1.15223696528766	-1.16265319256742	-1.17120939178942	-0.911301499403313	-1.14997972538381	-1.16029518702849	-1.16967783621951	-0.385190450359539	0.909269396991215	1
Merged-chr11-106675485-4	chr11	106675346	106675546	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305158, intron 12 of 14)	intron (NM_001305158, intron 12 of 14)	39835.0	NM_001305158	18613.0	Mm.343951	NM_008816	ENSMUSG00000020717	Pecam1	C85791|Cd31|PECAM-1|Pecam	platelet/endothelial cell adhesion molecule 1	protein-coding	3.74605036439963	3.64697566392697	2.25162366891756	3.42694770782723	4.0881854325541	3.29354466585306	2.6495442327346	4.0542492467515	0.404781576783309	0.519490316925444	0.947641799425091
Merged-chr11-116095202-4	chr11	116095123	116095323	+	844.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8228.0	NM_001347642	22378.0	Mm.284792	NM_016852	ENSMUSG00000034341	Wbp2	-	WW domain binding protein 2	protein-coding	0.358840670450922	0.030386665139799	0.0258736590340959	0.41187442560053	0.366817426592572	0.0314077314751966	0.0268666928548457	0.417380277679181	0.0348560535760958	0.986867547413466	1
Merged-chr15-96284066-2	chr15	96283966	96284166	+	945.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3456.0	NM_175251	77044.0	Mm.17166	NM_175251	ENSMUSG00000033237	Arid2	1700124K17Rik|4432409D24Rik|BAF200|zipzap/p200	AT rich interactive domain 2 (ARID, RFX-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-71126828-3	chr4	71126701	71126901	+	996.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	-591873.0	NM_172694	230316.0	Mm.251188	NM_172694	ENSMUSG00000039270	Megf9	4933405H16Rik|9630025C07|Egfl5|mKIAA0818	multiple EGF-like-domains 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59643974-4	chr15	59643893	59644093	+	766.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4661.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55585711-2	chr14	55585611	55585811	+	744.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033146)	promoter-TSS (NM_033146)	-457.0	NM_033146	85308.0	Mm.40667	NM_033146	ENSMUSG00000022217	Emc9	1500005A01Rik|Cgi112|Fam158a	ER membrane protein complex subunit 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-62720157-4	chr18	62720047	62720247	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168423, intron 1 of 4)	intron (NM_001168423, intron 1 of 4)	21240.0	NM_001168423	100038417.0	Mm.387557	NM_001168423	ENSMUSG00000073551	Spink13	Gm10534|Spink5l3	serine peptidase inhibitor, Kazal type 13	protein-coding	5.50305174012515	6.21770816616045	4.49943691558288	5.90230681553245	5.33763335442177	5.33025090640254	5.13597261106443	5.23199421850254	-0.456771442383941	0.178076466775246	0.648362827425708
Merged-chr4-125119982-2	chr4	125119882	125120082	+	754.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_153159, exon 6 of 6)	exon (NM_153159, exon 6 of 6)	7899.0	NM_153159	230738.0	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-61404328-4	chr3	61404218	61404418	+	996.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	39811.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4439453-3	chr19	4439321	4439521	+	728.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045990)	promoter-TSS (NR_045990)	22.0	NM_007485	11854.0	Mm.27701	NM_007485	ENSMUSG00000041845	Rhod	AI326383|Arhd|Rho|RhoHP1|RhoM	ras homolog family member D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30335646-1	chr7	30335546	30335746	+	540.0	f1_balb.idr	Intergenic	Intergenic	-13271.0	NM_001033140	68332.0	Mm.6844	NM_001033140	ENSMUSG00000074211	Sdhaf1	0610010E21Rik|AI430885|AW490662|Lyrm8	succinate dehydrogenase complex assembly factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-69854114-4	chr14	69854019	69854219	+	724.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028560, intron 3 of 6)	intron (NM_028560, intron 3 of 6)	13712.0	NM_028526	73523.0	Mm.23509	NM_028526	ENSMUSG00000022085	Pebp4	PEBP-4	phosphatidylethanolamine binding protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-16887672-3	chr12	16887577	16887777	+	997.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7301.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	2.40360750082587	2.88725282676083	3.0432344917054	3.42569657986848	3.7723331397086	3.58647731454393	4.11707937318735	3.89733380981881	1.35726924339295	0.0152713379387242	0.147040611889403
Merged-chr4-132611552-4	chr4	132611460	132611660	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27486.0	NM_210071	14050.0	Mm.227733	NM_010166	ENSMUSG00000028886	Eya3	AI844637	EYA transcriptional coactivator and phosphatase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120366577-2	chr11	120366477	120366677	+	736.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172802, intron 1 of 4)	intron (NM_172802, intron 1 of 4)	5043.0	NM_172802	238021.0	Mm.481403	NM_172802	ENSMUSG00000025380	Fscn2	A930022G03|Ahl8|C630046B20Rik	fascin actin-bundling protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-81856405-4	chr7	81856306	81856506	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER20C_Mm|LTR|ERVK	-2595.0	NR_111910	107769.0	Mm.221412	NM_145375	ENSMUSG00000038623	Tm6sf1	AI428514|BC023123|C630016D09Rik	transmembrane 6 superfamily member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-192138161-4	chr1	192138064	192138264	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144814)	promoter-TSS (NM_144814)	-124.0	NM_001290282	214742.0	Mm.207457	NM_144814	ENSMUSG00000037395	Rcor3	4921514E24Rik|C730034D20Rik|E130101E15Rik	REST corepressor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-85800540-2	chr17	85800440	85800640	+	552.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-112286.0	NM_011380	20472.0	Mm.5039	NM_011380	ENSMUSG00000024134	Six2	-	sine oculis-related homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-44937216-2	chr13	44937116	44937316	+	693.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_025772, intron 7 of 9)	MTD|LTR|ERVL-MaLR	64880.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-90214712-2	chr7	90214612	90214812	+	940.1666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50720.0	NM_029256	75338.0	Mm.487222	NM_029256	ENSMUSG00000030617	Ccdc83	4930549K11Rik|4930554C01Rik|4932423M01Rik	coiled-coil domain containing 83	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99399868-2	chr15	99399768	99399968	+	582.5	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001171034, exon 2 of 11)	5' UTR (NM_001171034, exon 2 of 11)	6649.0	NM_001171035	110213.0	Mm.16769	NM_026669	ENSMUSG00000023010	Tmbim6	5031406P05Rik|Bi1|Tegt	transmembrane BAX inhibitor motif containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-50161738-3	chr11	50161612	50161812	+	856.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029745, intron 16 of 20)	intron (NM_029745, intron 16 of 20)	-13139.0	NM_026543	68067.0	Mm.40828	NM_026543	ENSMUSG00000020381	Mrnip	2900016G09Rik|3010026O09Rik|AI851514|AW475975	MRN complex interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-66231087-4	chr14	66230969	66231169	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	-17245.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-21417221-3	chr12	21417117	21417317	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_011739, exon 1 of 5)	5' UTR (NM_011739, exon 1 of 5)	219.0	NM_011739	22630.0	Mm.289630	NM_011739	ENSMUSG00000076432	Ywhaq	2700028P07Rik|AA409740|AU021156|R74690	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-98768510-3	chr13	98768384	98768584	+	932.666626	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172591, intron 8 of 25)	intron (NM_172591, intron 8 of 25)	46965.0	NM_172591	218503.0	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-79732890-3	chr7	79732787	79732987	+	949.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113471)	promoter-TSS (NM_001113471)	-111.0	NM_001113471	103968.0	Mm.254917	NM_175640	ENSMUSG00000030546	Plin1	6030432J05Rik|Peri|Plin	perilipin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-44544970-2	chr19	44544870	44545070	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033343, intron 1 of 25)	intron (NM_001033343, intron 1 of 25)	878.0	NM_001033343	240667.0	Mm.329873	NM_001033343	ENSMUSG00000051984	Sec31b	Gm341|Sec31l2	Sec31 homolog B (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-116291735-2	chr10	116291635	116291835	+	820.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9639.0	NM_029928	19263.0	Mm.37213	NM_029928	ENSMUSG00000020154	Ptprb	3230402H02Rik|C130094E24|Ptpz|Rptpb|VE-PTP|Veptp	protein tyrosine phosphatase, receptor type, B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-34187224-4	chr5	34187164	34187364	+	987.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010753, intron 2 of 5)	CpG	446.0	NM_010753	17122.0	Mm.259260	NM_010753	ENSMUSG00000037235	Mxd4	2810410A03Rik|Mad4|bHLHc12	Max dimerization protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-81783195-4	chr13	81783119	81783319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007684)	promoter-TSS (NM_007684)	-28.0	NM_007684	12626.0	Mm.12481	NM_007684	ENSMUSG00000021537	Cetn3	MmCEN3	centrin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-88689594-3	chr5	88689423	88689623	+	728.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-13352.0	NM_178700	231413.0	Mm.332474	NM_178700	ENSMUSG00000044221	Grsf1	BB232551|C80280|D5Wsu31e	G-rich RNA sequence binding factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-28972705-2	chr16	28972605	28972805	+	973.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43007.0	NM_177718	239796.0	Mm.155887	NM_177718	ENSMUSG00000051065	Mb21d2	1600021P15Rik|A430031N04|C87006	Mab-21 domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-50297301-2	chr2	50297201	50297401	+	593.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001348198)	promoter-TSS (NM_001348198)	491.0	NR_040362	100502624.0	Mm.382825	NR_040361	ENSMUSG00000085862	Gm13483	-	predicted gene 13483	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-142571391-3	chr6	142571285	142571485	+	916.022217	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_008428, exon 1 of 3)	5' UTR (NM_008428, exon 1 of 3)	229.0	NM_001330363	16523.0	Mm.1482	NM_008428	ENSMUSG00000030247	Kcnj8	AI448900|Kir6.1|gnite|slmbr|sltr|uKATP-1	potassium inwardly-rectifying channel, subfamily J, member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-93682542-2	chr16	93682442	93682642	+	924.916626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173047)	promoter-TSS (NM_173047)	-677.0	NM_173047	109857.0	Mm.4512	NM_173047	ENSMUSG00000022947	Cbr3	1110001J05Rik|C81353	carbonyl reductase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-189922352-4	chr1	189922260	189922460	+	986.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026796)	promoter-TSS (NM_026796)	-69.0	NM_026796	226830.0	Mm.156895	NM_026796	ENSMUSG00000026603	Smyd2	1110020E07Rik|4930402C15|KMT3C|Zmynd14	SET and MYND domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-31056707-10	chr3	31056708	31056908	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	17842.0	NR_105975	102465610.0		NR_105975	ENSMUSG00000098890	Mir7008	Gm27752|mmu-mir-7008	microRNA 7008	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-61924643-2	chr11	61924543	61924743	+	722.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019921, intron 1 of 14)	L2|LINE|L2	5614.0	NM_019921	56697.0	Mm.274404	NM_019921	ENSMUSG00000047804	Akap10	1500031L16Rik|B130049N18Rik|D-AKAP-2|D-AKAP2|PRKA10	A kinase (PRKA) anchor protein 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-115820650-1	chr3	115820550	115820750	+	1000.0	f1_balb.idr	Intergenic	Intergenic	67409.0	NR_027894	68161.0	Mm.392043	NR_015487	ENSMUSG00000054426	A930005H10Rik	-	RIKEN cDNA A930005H10 gene	ncRNA	-1.53722258964646	-1.35557023456888	-1.51521609278655	-1.52305243984666	-1.24945022075946	-1.50360887271967	-1.51305647152326	-1.52164973746956	0.640848314145952	0.855386040730507	1
Merged-chr10-95514130-4	chr10	95514054	95514254	+	861.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR23|LTR|ERV1	-1008.0	NM_080560	93765.0	Mm.371667	NM_080560	ENSMUSG00000074781	Ube2n	1500026J17Rik|AL022654|BB101821|UBC13	ubiquitin-conjugating enzyme E2N	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-94349021-2	chr11	94348921	94349121	+	848.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029600, intron 29 of 30)	B3A|SINE|B2	21020.0	NM_146024	71452.0	Mm.141054	NM_027799	ENSMUSG00000020864	Ankrd40	1110011C06Rik|5530600A18Rik|Gcap15	ankyrin repeat domain 40	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-13673227-2	chr16	13673127	13673327	+	887.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177552, intron 1 of 5)	intron (NM_001177552, intron 1 of 5)	1369.0	NM_025653	67118.0	Mm.223689	NM_025653	ENSMUSG00000022684	Bfar	3010001A07Rik|3110001I22Rik|AI666707|AW107665|Bar|Rnf47	bifunctional apoptosis regulator	protein-coding	-0.10129403594322	0.888449436571122	-0.0841680231382033	-0.0905353608562804	-0.0996781901533225	0.903496030457706	-0.0823628092250997	-0.0894170162904303	0.0395142251790123	0.986378381761409	1
Merged-chr3-20130445-2	chr3	20130345	20130545	+	550.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355261, intron 5 of 7)	intron (NM_001355261, intron 5 of 7)	24671.0	NM_001355261	27357.0	Mm.6375	NM_013755	ENSMUSG00000019528	Gyg	AU017667|GN1|Gyg1	glycogenin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-30114308-1	chr6	30114208	30114408	+	912.6666869999999	f0_balb.idr	intron (NM_001361695, intron 6 of 11)	intron (NM_001361695, intron 6 of 11)	27143.0	NM_001361693	18181.0	Mm.259258	NM_010938	ENSMUSG00000058440	Nrf1	C87038|D6Ertd415e	nuclear respiratory factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-82819534-2	chr11	82819434	82819634	+	964.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001007465, intron 1 of 6)	B3A|SINE|B2	9509.0	NM_026097	67338.0	Mm.341608	NM_026097	ENSMUSG00000020696	Rffl	1700051E09Rik|4930516L10Rik|BG080975|Carp2	ring finger and FYVE like domain containing protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133752869-8	chr4	133752732	133752932	+	930.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001080819, exon 1 of 20)	exon (NM_001080819, exon 1 of 20)	779.0	NM_001080819	93760.0	Mm.22478	NM_001080819	ENSMUSG00000007880	Arid1a	1110030E03Rik|BAF250a|Osa1|Smarcf1	AT rich interactive domain 1A (SWI-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-58450404-2	chr10	58450304	58450504	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011240, intron 1 of 28)	B3|SINE|B2	3552.0	NM_011240	19386.0	Mm.431695	NM_011240	ENSMUSG00000003226	Ranbp2	A430087B05Rik|AI256741|NUP358	RAN binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-8516301-2	chr11	8516205	8516405	+	879.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 16 of 30)	intron (NM_001083587, intron 16 of 30)	148230.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	-0.115190410539528	0.272495051518526	-0.103579461132406	-0.107934037475903	-0.114108738556058	0.280207412946107	-0.102336806564878	0.729898022399519	2.1272379254791	0.360382365139292	1
Merged-chr10-100492023-2	chr10	100491923	100492123	+	991.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146009, intron 4 of 52)	intron (NM_146009, intron 4 of 52)	3734.0	NM_146009	216274.0	Mm.229114	NM_146009	ENSMUSG00000019971	Cep290	BC004690|Nphp6|b2b1454Clo|b2b1752Clo	centrosomal protein 290	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-52316053-5	chr14	52315911	52316111	+	831.700012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015772, intron 1 of 1)	intron (NM_015772, intron 1 of 1)	312.0	NM_001244916	50524.0	Mm.39487	NM_015772	ENSMUSG00000049532	Sall2	AI225809|AW559097|Msal-2|Sal-2|mKIAA0360|p150(Sal2)	spalt like transcription factor 2	protein-coding	1.77293658630867	1.56503966425095	0.572304385053995	1.22054127435831	0.894296356830864	0.589003247002752	0.575343844725444	0.563441675011916	-3.42332571343999	0.0428088429968828	0.296475910152291
Merged-chr3-21806652-4	chr3	21806555	21806755	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-269997.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-119309440-4	chr13	119309360	119309560	+	738.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA6|LINE|L1	99551.0	NM_008710	18115.0	Mm.132584	NM_008710	ENSMUSG00000116207	Nnt	4930423F13Rik|AI323702|BB168308	nicotinamide nucleotide transhydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-57282181-3	chr12	57282067	57282267	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164370, intron 1 of 9)	intron (NM_001164370, intron 1 of 9)	51742.0	NM_001164370	73490.0	Mm.268180	NM_001164370	ENSMUSG00000047022	Mipol1	1700081O04Rik|6030439O22Rik|AU021838|AW536152|D12Ertd19e	mirror-image polydactyly 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-14657587-4	chr18	14657492	14657692	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009280, intron 3 of 10)	intron (NM_009280, intron 3 of 10)	25322.0	NM_001161369	268996.0	Mm.31761	NM_009280	ENSMUSG00000037013	Ss18	D130059H17|Ssxt|Syt	SS18, nBAF chromatin remodeling complex subunit	protein-coding	1.38983113090206	1.34043014259961	0.980234995981298	0.770323345368914	1.64975350357827	0.795238993221039	0.986651560309881	1.58143541728864	0.665812425133956	0.633914528801665	0.982417279970648
Merged-chr10-118085464-5	chr10	118085343	118085543	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56344.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	8.11916548415275	8.04022616229502	7.59771801401194	8.1459999713478	7.8640799513937	7.71515561613155	7.65233343699165	8.07048208201541	-0.161973771381457	0.289079591027715	0.794651459678379
Merged-chr9-106566619-3	chr9	106566513	106566713	+	859.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR26_Mus|LTR|ERVK	4354.0	NM_026090	67320.0	Mm.335431	NM_026090	ENSMUSG00000041009	Iqcf4	1700042N06Rik|mtIQ1	IQ motif containing F4	protein-coding	2.23702316402741	1.44156762015315	2.91975056312885	1.08890422029056	2.97315719307438	1.88815322874382	1.81879188864724	1.09383586831352	0.0253238187435241	0.982133107133207	0.998431161219273
Merged-chr5-128971705-2	chr5	128971605	128971805	+	924.1666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-18219.0	NM_001310733	231760.0	Mm.233996	NM_001081388	ENSMUSG00000029420	Rimbp2	A930033C01Rik|mKIAA0318	RIMS binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-77797303-4	chr18	77797214	77797414	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_152167)	promoter-TSS (NR_152167)	-924.0	NR_152167	619308.0	Mm.490456	NM_001033812		F830208F22Rik	-	RIKEN cDNA F830208F22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-128613425-2	chr4	128613300	128613500	+	753.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3302.0	NM_177758	269585.0	Mm.153291	NM_177758	ENSMUSG00000061894	Zscan20	C130001F22|Zfp31|Zkscan20	zinc finger and SCAN domains 20	protein-coding	1.26972824562762	0.910255647870066	0.521561376810742	0.514353057562231	0.663605205476454	1.06712270304271	1.24980285287979	0.515615302367911	0.283966226063435	0.863319024838354	1
Merged-chr5-99339890-4	chr5	99339756	99339956	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-86929.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-45852897-3	chr1	45852749	45852949	+	752.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57683.0	NM_028599	73674.0	Mm.270376	NM_028599	ENSMUSG00000025995	Wdr75	1300003A18Rik|2410118I19Rik|C77608	WD repeat domain 75	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-31532086-1	chr6	31531986	31532186	+	548.0	f1_c57bl6.idr	intron (NM_013723, intron 1 of 7)	ORR1C2|LTR|ERVL-MaLR	31851.0	NM_013723	27205.0	Mm.89918	NM_013723	ENSMUSG00000025608	Podxl	AW121214|Ly102|PC|PCLP-1|Pclp1|Podxl1	podocalyxin-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-131085940-7	chr2	131085803	131086003	+	905.264282	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011426, intron 1 of 20)	intron (NM_011426, intron 1 of 20)	862.0	NM_011426	20612.0	Mm.1374	NM_011426	ENSMUSG00000027322	Siglec1	Cd169|Siglec-1|Sn	sialic acid binding Ig-like lectin 1, sialoadhesin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-113167336-3	chr7	113167241	113167441	+	690.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25326.0	NR_045978	75239.0	Mm.381688	NR_045978	ENSMUSG00000110009	4930543E12Rik	4930545H14Rik	RIKEN cDNA 4930543E12 gene	ncRNA	-0.0973500315777442	0.401294045706357	-0.236265043536659	-0.240136246052394	-0.245618773894824	0.412575840150277	-0.235159629189082	-0.239459459405397	-0.197361526028855	0.934213539211496	1
Merged-chr16-59600968-4	chr16	59600879	59601079	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-35966.0	NR_040564	75145.0	Mm.399348	NR_040564		4930547E14Rik	-	RIKEN cDNA 4930547E14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-10079759-1	chr2	10079659	10079859	+	804.333313	f0_balb.idr	promoter-TSS (NM_025280)	promoter-TSS (NM_025280)	751.0	NM_020615	11949.0	Mm.12677	NM_020615	ENSMUSG00000025781	Atp5c1	1700094F02Rik|Atp5f1c	ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-20866174-2	chr5	20866074	20866274	+	780.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172992, intron 1 of 17)	B4A|SINE|B4	15950.0	NM_172992	68770.0	Mm.86410	NM_172992	ENSMUSG00000039987	Phtf2	1110054G21Rik|9530062N20Rik|AI447096|C77923	putative homeodomain transcription factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-56690906-4	chr14	56690802	56691002	+	972.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153396, intron 9 of 12)	intron (NR_153396, intron 9 of 12)	10098.0	NR_046209	100503823.0	Mm.474486	NR_046209		Gm16973	-	predicted gene, 16973	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-43768855-2	chr7	43768755	43768955	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027097)	promoter-TSS (NM_027097)	-245.0	NM_027097	69511.0	Mm.20163	NM_027097	ENSMUSG00000044430	Klk12	2310008B01Rik|AI324852|KLK-L5	kallikrein related-peptidase 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-177464863-3	chr2	177464755	177464955	+	827.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177568, intron 1 of 3)	intron (NM_001177568, intron 1 of 3)	113.0	NM_001177568	628308.0	Mm.460436	NM_001177568	ENSMUSG00000078866	Zfp970	Gm14420	zinc finger protein 970	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-54713088-4	chr14	54713032	54713232	+	929.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207131)	promoter-TSS (NM_207131)	-958.0	NM_207131	110794.0	Mm.236223	NM_207131	ENSMUSG00000052435	Cebpe	C/EBPe|C/EBPepsilon|CRP1|Gm294	CCAAT/enhancer binding protein (C/EBP), epsilon	protein-coding	-0.623625947985874	-0.758765070005478	-0.581983413064288	-0.764592146306827	-0.768173523634788	-0.126227690333107	-0.761330032780069	-0.764149135575376	1.3293754857403	0.631736788850237	1
Merged-chr6-5095759-2	chr6	5095659	5095859	+	586.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_181595, intron 6 of 15)	L2c|LINE|L2	98187.0	NM_011134	18979.0	Mm.237657	NM_011134	ENSMUSG00000002588	Pon1	Pon	paraoxonase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-137854083-4	chr3	137853960	137854160	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-10427.0	NM_001316995	51788.0	Mm.117541	NM_016750	ENSMUSG00000037894	H2afz	H2A.Z|H2a.z-1	H2A histone family, member Z	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52583078-4	chr13	52582976	52583176	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001198977)	promoter-TSS (NM_001198977)	-361.0	NM_001198977	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-21949998-4	chr6	21949916	21950116	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311061, intron 1 of 11)	CpG	401.0	NM_023626	71777.0	Mm.39999	NM_023626	ENSMUSG00000029670	Ing3	1300013A07Rik|P47ING3	inhibitor of growth family, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-52821574-1	chr12	52821474	52821674	+	664.0	f1_balb.idr	intron (NM_198111, intron 2 of 13)	Lx8|LINE|L1	122191.0	NM_198111	238161.0	Mm.310822	NM_198111	ENSMUSG00000061603	Akap6	AI482140|Akapalpha|Akapbeta|PRKA	A kinase (PRKA) anchor protein 6	protein-coding	-2.18243820993087	-2.15538464093652	-2.16356586349869	-2.17028616330028	-2.18053909940952	-2.15361173587851	-2.16171381403791	-2.0403552525549	0.759018020146679	0.829933115115583	1
Merged-chr2-166699566-7	chr2	166699469	166699669	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	14263.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-36262028-4	chr17	36261914	36262114	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001357889)	TTS (NM_001357889)	-4168.0	NM_026308	67676.0	Mm.27131	NM_026308	ENSMUSG00000024446	Rpp21	0610037N01Rik	ribonuclease P 21 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-181584191-2	chr2	181584091	181584291	+	612.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001164597, exon 17 of 17)	3' UTR (NM_001164597, exon 17 of 17)	-2218.0	NM_026765	68556.0	Mm.232400	NM_026765	ENSMUSG00000089917	Uckl1	1110007H10Rik|Urkl1	uridine-cytidine kinase 1-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-87147127-4	chr12	87147034	87147234	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010363)	promoter-TSS (NM_010363)	-31.0	NM_001252555	14874.0	Mm.29652	NM_010363	ENSMUSG00000021033	Gstz1	MAAI	glutathione transferase zeta 1 (maleylacetoacetate isomerase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-18793449-2	chr13	18793349	18793549	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172120, intron 6 of 28)	intron (NM_172120, intron 6 of 28)	76157.0	NM_172120	218035.0	Mm.27389	NM_172120	ENSMUSG00000041236	Vps41	AI317346|Vam2|mVam2	VPS41 HOPS complex subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153239213-4	chr2	153239120	153239320	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018807, intron 1 of 2)	intron (NM_018807, intron 1 of 2)	2138.0	NM_018807	54711.0	Mm.103199	NM_018807	ENSMUSG00000051413	Plagl2	AU018672|AW552839|mKIAA0198	pleiomorphic adenoma gene-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-65974040-2	chr3	65973940	65974140	+	655.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-15791.0	NM_001355432	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-132304207-4	chr7	132304114	132304314	+	939.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029935, intron 1 of 7)	MTEb|LTR|ERVL-MaLR	-11450.0	NR_028578	100043682.0	Mm.482794	NR_028578	ENSMUSG00000109270	Gm10584	-	predicted gene 10584	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128429933-4	chr2	128429835	128430035	+	996.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028589)	promoter-TSS (NR_028589)	-584.0	NR_028590	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53823831-3	chr4	53823723	53823923	+	853.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2222.0	NM_028053	52076.0	Mm.27184	NM_028053	ENSMUSG00000028420	Tmem38b	1600017F22Rik|AA437809|AV051057|D4Ertd89e|TRIC-B|mg33b	transmembrane protein 38B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123574961-1	chr5	123574861	123575061	+	724.0	f1_balb.idr	Intergenic	Intergenic	-1946.0	NM_029929	77573.0	Mm.41372	NM_029929	ENSMUSG00000029434	Vps33a	3830421M04Rik|AI503300|AW048546|AW554476|bf	VPS33A CORVET/HOPS core subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-36931634-4	chr15	36931535	36931735	+	881.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	75767.0	NM_026521	68036.0	Mm.371631	NM_026521	ENSMUSG00000062397	Zfp706	3110006P09Rik|AA793007|AW536850|C77232|Znf706	zinc finger protein 706	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-62598619-2	chr11	62598519	62598719	+	701.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011706, intron 15 of 15)	intron (NM_011706, intron 15 of 15)	-4258.0	NR_030738	69221.0	Mm.270874	NR_030738	ENSMUSG00000086841	2410006H16Rik	-	RIKEN cDNA 2410006H16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-17386354-1	chr17	17386254	17386454	+	681.0	f0_balb.idr	intron (NM_025934, intron 7 of 9)	MTD|LTR|ERVL-MaLR	12022.0	NM_025934	67045.0	Mm.35117	NM_025934	ENSMUSG00000023852	Riok2	2010110K24Rik|2410085M17Rik	RIO kinase 2	protein-coding	0.280612124626624	1.08998593142834	0.298251729971424	0.629032401090794	0.282265706506158	1.10335646172599	0.300125745622352	0.634215716341543	0.0366803487818372	0.984355071423213	1
Merged-chr12-112707183-4	chr12	112707088	112707288	+	997.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14986.0	NM_001024602	217882.0	Mm.23689	NM_001024602	ENSMUSG00000072825	Cep170b	AI466840|AW555464|Kiaa0284|mKIAA0284	centrosomal protein 170B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-90245023-4	chr11	90244920	90245120	+	816.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4456.0	NM_026178	67468.0	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-75413108-4	chr12	75413019	75413219	+	903.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175644, intron 2 of 2)	L2a|LINE|L2	3662.0	NM_175644	217674.0	Mm.252250	NM_175644	ENSMUSG00000048982	Gphb5	OGH|Zlut1	glycoprotein hormone beta 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-100635405-3	chr15	100635298	100635498	+	855.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001285414, exon 1 of 3)	5' UTR (NM_001285414, exon 1 of 3)	161.0	NM_001285414	207818.0	Mm.26282	NM_174992	ENSMUSG00000053559	Smagp	-	small cell adhesion glycoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5913405-2	chr19	5913305	5913505	+	620.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291078)	promoter-TSS (NM_001291078)	-534.0	NM_001291078	19708.0	Mm.2651	NM_011262	ENSMUSG00000024826	Dpf2	2210010M07Rik|BAF45D|Req|ubi-d4	D4, zinc and double PHD fingers family 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-154162245-2	chr4	154162146	154162346	+	683.599976	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	-1562.0	NM_026388	67808.0	Mm.288737	NM_026388	ENSMUSG00000029030	Tprgl	1200015A19Rik|Svap30|Tprg1l|mover	transformation related protein 63 regulated like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-76916716-1	chr11	76916616	76916816	+	603.5	f0_balb.idr	TTS (NM_025655)	TTS (NM_025655)	12171.0	NM_025655	66601.0	Mm.25138	NM_025655	ENSMUSG00000020839	Tmigd1	2010002A20Rik|Tmigd	transmembrane and immunoglobulin domain containing 1	protein-coding	0.131623864693755	-0.0122629349997449	0.619572988740473	-0.0250817705592848	-0.0330928629473349	-0.0106485136557333	-0.0178738672114674	1.03070907568504	0.811849540774031	0.709264167638928	1
Merged-chr1-165671219-2	chr1	165671119	165671319	+	948.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038846, intron 1 of 5)	intron (NM_001038846, intron 1 of 5)	-36678.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-118742582-4	chr7	118742463	118742663	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027815, intron 1 of 30)	intron (NM_027815, intron 1 of 30)	2292.0	NM_027815	71517.0	Mm.213298	NM_027815	ENSMUSG00000030982	9030624J02Rik	2610029J22Rik	RIKEN cDNA 9030624J02 gene	protein-coding	5.63794904837045	5.47099481923591	6.53617801482181	5.57444979113095	5.73371280909549	5.83122712591167	5.77042503105742	5.02484864437543	-0.28373062411651	0.354643366961493	0.853391720177295
Merged-chr7-19334255-2	chr7	19334155	19334355	+	848.8333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-10816.0	NM_001127324	13870.0	Mm.280913	NM_007948	ENSMUSG00000003549	Ercc1	Ercc-1	excision repair cross-complementing rodent repair deficiency, complementation group 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-57237197-4	chr12	57237097	57237297	+	899.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164370, intron 1 of 9)	Lx9|LINE|L1	6772.0	NM_001164370	73490.0	Mm.268180	NM_001164370	ENSMUSG00000047022	Mipol1	1700081O04Rik|6030439O22Rik|AU021838|AW536152|D12Ertd19e	mirror-image polydactyly 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-146638678-4	chr6	146638581	146638781	+	847.2333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3898.0	NM_025315	108098.0	Mm.26212	NM_025315	ENSMUSG00000030291	Med21	0610007L03Rik|AI449604|D19234|D6Ertd782e|Srb7|Surb7	mediator complex subunit 21	protein-coding	2.29652802414854	2.71620717588405	3.27641266403672	3.18500931591492	1.27555679848616	1.41974509141031	2.39489730932341	2.75471305987886	-1.60426137359866	0.0766117835034992	0.420161756163222
Merged-chr14-20707516-4	chr14	20707388	20707588	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252081)	promoter-TSS (NM_001252081)	-64.0	NM_001252081	268721.0	Mm.275082	NM_027996	ENSMUSG00000021819	Zswim8	2310021P13Rik|4832404P21Rik|Kiaa0913|mKIAA0913	zinc finger SWIM-type containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-18658787-2	chr3	18658687	18658887	+	624.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-178310.0	NR_040544	73959.0	Mm.60616	NR_040544	ENSMUSG00000102699	4930433B08Rik	-	RIKEN cDNA 4930433B08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-93654943-2	chr14	93654845	93655045	+	782.0	f0_balb.idr|f1_balb.idr	intron (NM_001081377, intron 2 of 4)	intron (NM_001081377, intron 2 of 4)	235724.0	NM_001271800	211712.0	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding	1.36964927009857	1.90418536485424	1.84005747818057	1.19645004181925	2.34011618140868	2.07463502548137	2.45538344007646	2.61678798263405	2.1371032313096	0.0309943120408792	0.242946269076526
Merged-chr4-59593701-2	chr4	59593601	59593801	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301367, intron 4 of 11)	intron (NM_001301367, intron 4 of 11)	12138.0	NM_024255	72479.0	Mm.272905	NM_024255	ENSMUSG00000028383	Hsdl2	2610207I16Rik	hydroxysteroid dehydrogenase like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131279558-2	chr1	131279458	131279658	+	553.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019777)	promoter-TSS (NM_019777)	5.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	0.151751735372408	0.783587242580338	0.16437280961097	0.159632294918237	0.635687286312767	0.171893534104394	0.346749703773211	0.700328291678059	0.856306102757527	0.67001723377512	1
Merged-chr14-102907071-4	chr14	102906960	102907160	+	965.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	75572.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101553783-4	chr11	101553685	101553885	+	935.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008676, intron 1 of 23)	intron (NM_008676, intron 1 of 23)	1131.0	NM_001252223	17966.0	Mm.784	NM_008676	ENSMUSG00000017119	Nbr1	mKIAA0049	neighbor of Brca1 gene 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-59441449-4	chr4	59441285	59441485	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4B|LINE|L1	-2752.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	5.04785557975856	5.21514083422809	4.59757444019283	4.61732544209559	4.84628057192261	4.4969218260831	5.57103650805791	4.68382234005342	0.0854092289146688	0.813929463130823	0.998431161219273
Merged-chr17-42447502-2	chr17	42447402	42447602	+	994.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355270, intron 2 of 2)	intron (NM_001355270, intron 2 of 2)	130902.0	NM_001355270	627626.0	Mm.390999	NM_028474	ENSMUSG00000042256	Ptchd4	3110082D06Rik|Gm321	patched domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-112264556-2	chr5	112264456	112264656	+	635.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001312893, intron 4 of 5)	intron (NM_001312893, intron 4 of 5)	8736.0	NM_001312893	12960.0	Mm.29488	NM_023695	ENSMUSG00000029343	Crybb1	3110006K12Rik|BB1CRY	crystallin, beta B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-100185538-3	chr12	100185608	100185808	+	820.2820429999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-2260.0	NR_045282	100038378.0	Mm.387075	NR_045282	ENSMUSG00000072884	Gm10433	-	predicted gene 10433	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132592541-2	chr4	132592441	132592641	+	693.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F2|SINE|Alu	28474.0	NM_001081211	19204.0	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-128747495-3	chr1	128747352	128747552	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-155153.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	1.35817618992212	2.73010179869684	1.81777629938161	3.02696227233508	3.14749803939882	3.62791364735449	4.05897282482022	4.42001202583605	2.43857770625306	0.000677436178121966	0.0142427790860526
Merged-chr4-119165967-2	chr4	119165867	119166067	+	756.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	7889.0	NM_001145935	195522.0	Mm.169620	NM_183140	ENSMUSG00000045268	Zfp691	6430544H17Rik|Znf691	zinc finger protein 691	protein-coding	-1.02399571608706	-1.00526265269726	-1.01704094937231	-1.020509632451	-0.749011178236936	-0.508513708853148	-1.01437460117799	-1.02014231438484	2.8633379022308	0.356921943934824	1
Merged-chr10-80829490-2	chr10	80829390	80829590	+	611.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_027656)	TTS (NR_027656)	693.0	NR_035503	100316778.0		NR_035503	ENSMUSG00000087993	Mir1982	mir-1982|mmu-mir-1982	microRNA 1982	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-99074656-4	chr9	99074559	99074759	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029094, intron 8 of 23)	B4A|SINE|B4	-38969.0	NM_001080776	382097.0	Mm.293727	NM_001080776	ENSMUSG00000044860	Gm1123	AV052824|CLSP	predicted gene 1123	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-107113446-2	chr13	107113346	107113546	+	566.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	90876.0	NR_015471	100040322.0	Mm.133867	NR_015471	ENSMUSG00000071181	3830408C21Rik	-	RIKEN cDNA 3830408C21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-55908466-2	chr7	55908324	55908524	+	678.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001164661, exon 23 of 32)	exon (NM_001164661, exon 23 of 32)	54069.0	NM_001256133	93790.0	Mm.37249	NM_023647	ENSMUSG00000030452	Nipa2	2600017P10Rik|3830408P04Rik|AB041581	non imprinted in Prader-Willi/Angelman syndrome 2 homolog (human)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30559265-4	chr7	30559124	30559324	+	847.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290569, intron 1 of 8)	intron (NM_001290569, intron 1 of 8)	422.0	NM_029377	75660.0	Mm.379242	NM_029377	ENSMUSG00000036845	Lin37	1810054G18Rik	lin-37 homolog (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-67467122-2	chr7	67466993	67467193	+	592.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-94235.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	-1.53362919331644	-1.50201671710775	-1.51157659084044	-1.08120497225282	-1.53141005593807	-1.49994505258991	-1.50941244497383	-1.51802371459528	-1.94474658522739	0.577200604274218	1
Merged-chr13-9883220-4	chr13	9883125	9883325	+	897.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033269, intron 4 of 4)	intron (NM_033269, intron 4 of 4)	-117904.0	NM_144516	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-10012501-4	chr3	10012408	10012608	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001272098)	promoter-TSS (NM_001272098)	-77.0	NM_001272097	16592.0	Mm.741	NM_010634	ENSMUSG00000027533	Fabp5	E-FABP|Fabpe|Klbp|PA-FABP|mal1	fatty acid binding protein 5, epidermal	protein-coding	3.50490122566977	3.20149854193855	3.36921334578706	3.35483640601724	3.13829779898404	3.11392562836231	2.44553366784053	3.57849511026163	-0.377492652092185	0.527450517484982	0.948839578239191
Merged-chr3-100534576-4	chr3	100534487	100534687	+	936.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-45395.0	NM_001142952	74645.0	Mm.226900	NM_001142952	ENSMUSG00000044468	Fam46c	4930431B09Rik|AI449797	family with sequence similarity 46, member C	protein-coding	3.90104718262047	4.06167784058267	2.66606994866605	4.50677954725244	3.32411795160664	2.79287006603759	3.11357995851668	4.01479801471011	-0.78506675268533	0.186108602851886	0.662853062641082
Merged-chr10-19850881-3	chr10	19850788	19850988	+	943.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029529, exon 1 of 2)	exon (NM_029529, exon 1 of 2)	571.0	NM_029529	76157.0	Mm.74324	NM_029529	ENSMUSG00000050473	Slc35d3	6230421J19Rik|Frcl1	solute carrier family 35, member D3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33546565-4	chr16	33546464	33546664	+	876.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083902, intron 3 of 11)	intron (NM_001083902, intron 3 of 11)	27969.0	NM_001083902	171286.0	Mm.35253	NM_134251	ENSMUSG00000035506	Slc12a8	CCC9|E330020C02Rik	solute carrier family 12 (potassium/chloride transporters), member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21265894-2	chr9	21265794	21265994	+	728.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153583, intron 1 of 9)	MIR|SINE|MIR	609.0	NM_153583	235040.0	Mm.440165	NM_153583	ENSMUSG00000002820	Atg4d	9830134P12Rik|APG4-D|Apg4d|Atg4dl|Autl4	autophagy related 4D, cysteine peptidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-23038609-3	chr19	23038508	23038708	+	761.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-102618.0	NM_010638	16601.0	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|Gm9971	Kruppel-like factor 9	protein-coding	0.480643130669683	1.18553882159937	0.540940861137317	0.314175016917784	0.486382523577891	1.50218815289797	0.325081473111713	0.31566905141318	0.446352857951077	0.795260360777782	0.998431161219273
Merged-chr8-117056476-2	chr8	117056385	117056585	+	925.974976	f1_balb.idr|f1_c57bl6.idr	intron (NM_029686, intron 12 of 42)	intron (NM_029686, intron 12 of 42)	25964.0	NM_029686	76645.0	Mm.159753	NM_029686	ENSMUSG00000034416	Pkd1l2	1700126L06Rik	polycystic kidney disease 1 like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56442902-2	chr17	56442802	56443002	+	843.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252455, intron 6 of 27)	intron (NM_001252455, intron 6 of 27)	19319.0	NM_001252456	19280.0	Mm.258771	NM_011218	ENSMUSG00000013236	Ptprs	AL022616|PTP|PTP-NU3|PTPNU-3|PTPsigma|Ptpt9|R-PTP-S|RPTPsigma	protein tyrosine phosphatase, receptor type, S	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117940760-2	chr11	117940660	117940860	+	909.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28606.0	NM_007707	12702.0	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-32300061-2	chr11	32299961	32300161	+	748.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175000)	promoter-TSS (NM_175000)	-8.0	NM_175000	216635.0	Mm.338482	NM_175000	ENSMUSG00000020295	Hbq1a	A230090E05Rik|Gm876|Hbq1|Hbqt2	hemoglobin, theta 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-122630630-4	chr2	122630544	122630744	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033256)	promoter-TSS (NM_001033256)	19.0	NM_001033256	214616.0	Mm.271306	NM_001033256		Spata5l1	AV141009|C130039A10Rik	spermatogenesis associated 5-like 1	protein-coding	4.24142459703345	4.96608788102578	5.36260814960791	5.3427940607416	5.09696256983357	4.60326036790001	4.20737087514479	4.62629326661797	-0.440434153487873	0.246526738688029	0.74563204527445
Merged-chr17-15631507-1	chr17	15631407	15631607	+	627.0	f0_balb.idr	promoter-TSS (NR_045431)	promoter-TSS (NR_045431)	-281.0	NR_045431	71008.0	Mm.399492	NR_045431		4933401D09Rik	-	RIKEN cDNA 4933401D09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-95528905-4	chr1	95528802	95529002	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	138692.0	NM_009183	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-132612205-2	chr7	132612105	132612305	+	791.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029609, intron 1 of 6)	MTEb|LTR|ERVL-MaLR	1562.0	NM_029609	76429.0	Mm.276721	NM_029609	ENSMUSG00000030946	Lhpp	2310007H09Rik	phospholysine phosphohistidine inorganic pyrophosphate phosphatase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-45494382-2	chr5	45494282	45494482	+	683.900024	f1_balb.idr|f1_c57bl6.idr	intron (NM_024434, intron 1 of 12)	intron (NM_024434, intron 1 of 12)	1008.0	NM_024434	66988.0	Mm.286830	NM_024434	ENSMUSG00000039682	Lap3	2410015L10Rik|AA410100|LAP-3|Lap|Lapep|Pep-7|Pep-S|Pep7|Peps	leucine aminopeptidase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-78379442-2	chr17	78379342	78379542	+	990.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_199448, intron 7 of 7)	intron (NM_199448, intron 7 of 7)	38710.0	NM_001285949	225020.0	Mm.236835	NM_199448	ENSMUSG00000056121	Fez2	9030616F16|D17Ertd315e	fasciculation and elongation protein zeta 2 (zygin II)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-101960370-2	chr5	101960269	101960469	+	753.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 6 of 66)	intron (NM_172882, intron 6 of 66)	109552.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-10962568-4	chr4	10962472	10962672	+	964.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45047.0	NM_175175	71801.0	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	3.08342426572502	1.99365820544256	2.3394039595478	1.48942479226425	2.60242965091723	1.81773372909456	2.4694991946193	1.24430272036794	-0.492705860013684	0.621945917890671	0.979537295922371
Merged-chr11-69848784-2	chr11	69848697	69848897	+	928.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001168497, intron 6 of 7)	intron (NM_001168497, intron 6 of 7)	2153.0	NR_033133	70310.0	Mm.28874	NM_023564	ENSMUSG00000019461	Plscr3	2210403O21Rik|2610037N06Rik|ESTM3|X83310	phospholipid scramblase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-94367031-4	chr3	94366940	94367140	+	870.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4596.0	NM_001136117	271944.0	Mm.271006	NM_001136117	ENSMUSG00000091648	C2cd4d	Gm659	C2 calcium-dependent domain containing 4D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-32607507-4	chr11	32607381	32607581	+	973.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 12 of 18)	L1MD|LINE|L1	-35074.0	NM_001271348	103583.0	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	3.59989323809617	2.7176836690063	3.76407464726712	3.66488648645016	3.39007114330685	3.02837782395481	3.15564437316218	3.15655808329321	-0.499602149627357	0.386201264613292	0.876334568009738
Merged-chr9-78533472-4	chr9	78533388	78533588	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51764.0	NM_010106	13627.0	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-99459365-4	chr5	99459257	99459457	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 2 of 3)	intron (NR_030692, intron 2 of 3)	-206430.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-67041998-4	chr6	67041895	67042095	+	967.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040278, intron 1 of 6)	intron (NR_040278, intron 1 of 6)	-4588.0	NM_007836	13197.0	Mm.72235	NM_007836	ENSMUSG00000036390	Gadd45a	AA545191|Ddit1|GADD45	growth arrest and DNA-damage-inducible 45 alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-21881454-2	chr16	21881354	21881554	+	570.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10515.0	NM_172821	71751.0	Mm.420837	NM_172821	ENSMUSG00000033618	Map3k13	C130026N12Rik|LZK	mitogen-activated protein kinase kinase kinase 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-37250230-3	chr10	37250144	37250344	+	931.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-111318.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122579133-2	chr8	122579033	122579233	+	685.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_016722, exon 14 of 14)	exon (NM_016722, exon 14 of 14)	-2226.0	NM_009698	11821.0	Mm.1786	NM_009698	ENSMUSG00000006589	Aprt	C85684	adenine phosphoribosyl transferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-73815972-2	chr13	73815872	73816072	+	587.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011390, exon 24 of 24)	3' UTR (NM_011390, exon 24 of 24)	31659.0	NM_028186	72293.0	Mm.45506	NM_028186	ENSMUSG00000021567	Nkd2	2210403L10Rik|AW212591|mNkd2	naked cuticle 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-3397764-2	chr6	3397702	3397902	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010156, intron 1 of 1)	intron (NM_010156, intron 1 of 1)	1769.0	NM_010156	209086.0	Mm.196013	NM_010156	ENSMUSG00000047735	Samd9l	AA175286|ESTM25|mKIAA2005	sterile alpha motif domain containing 9-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-146082151-2	chr3	146082051	146082251	+	635.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172864, intron 8 of 22)	intron (NM_172864, intron 8 of 22)	25885.0	NM_172864	242253.0	Mm.235040	NM_172864	ENSMUSG00000043020	Wdr63	4931433A13Rik|IC140|Ida7	WD repeat domain 63	protein-coding	0.998483435966547	1.5184483778362	2.10602440058488	1.94474629111251	1.00294697010773	1.529379440321	2.12400536906653	1.95556105151722	0.0360992282135949	0.976076909968701	0.998431161219273
Merged-chr15-99065848-4	chr15	99065761	99065961	+	959.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	BGLII_B|LTR|ERVK	8808.0	NR_155351	102637490.0	Mm.421289	NR_155351	ENSMUSG00000116371	Gm34284	-	predicted gene, 34284	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-6647122-3	chr2	6646989	6647189	+	999.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110232, intron 5 of 15)	intron (NM_001110232, intron 5 of 15)	74573.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-3928339-5	chr5	3928308	3928508	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_194462, exon 1 of 48)	5' UTR (NM_194462, exon 1 of 48)	222.0	NM_194462	100986.0	Mm.46044	NM_194462	ENSMUSG00000040407	Akap9	5730481H23Rik|AKAP-9|AKAP450|AW545847|C79026|G1-448-15|PRKA9|mKIAA0803|mei2-5|repro12	A kinase (PRKA) anchor protein (yotiao) 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-20454862-1	chr1	20454762	20454962	+	812.666687	f0_balb.idr	intron (NM_153179, intron 35 of 66)	intron (NM_153179, intron 35 of 66)	98408.0	NR_045734	75028.0	Mm.417820	NR_045734	ENSMUSG00000089914	4930486I03Rik	-	RIKEN cDNA 4930486I03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-10539396-1	chr13	10539296	10539496	+	740.0	f0_balb.idr	Intergenic	Intergenic	-178593.0	NM_033269	12671.0	Mm.342315	NM_033269	ENSMUSG00000046159	Chrm3	Chrm-3|M3|M3R	cholinergic receptor, muscarinic 3, cardiac	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-24937538-4	chr13	24937448	24937648	+	908.5750119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_102323, exon 1 of 2)	non-coding (NR_102323, exon 1 of 2)	113.0	NM_172532	214579.0	Mm.393311	NM_172532	ENSMUSG00000035936	Aldh5a1	6330403E24Rik|Ahd-1|Ahd1|D630032B01Rik|SSADH|Ssdh1	aldhehyde dehydrogenase family 5, subfamily A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-64193267-6	chr1	64193130	64193330	+	856.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-71841.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-96636704-2	chr15	96636604	96636804	+	981.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166458, intron 1 of 15)	intron (NM_001166458, intron 1 of 15)	5258.0	NM_134086	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-24304713-3	chr2	24304613	24304813	+	923.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13517.0	NM_153077	215274.0	Mm.218750	NM_153077	ENSMUSG00000046845	Il1f10	-	interleukin 1 family, member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-89294819-4	chr6	89294726	89294926	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9101.0	NR_131021	75131.0	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	Gm44205	RIKEN cDNA 4930512J16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-164071259-2	chr1	164071159	164071359	+	909.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164059, intron 5 of 7)	intron (NM_001164059, intron 5 of 7)	9183.0	NM_011346	20343.0	Mm.1461	NM_011346	ENSMUSG00000026581	Sell	AI528707|CD62L|L-selectin|LECAM-1|Lnhr|Ly-22|Ly-m22|Lyam-1|Lyam1	selectin, lymphocyte	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-83609382-4	chr13	83609283	83609483	+	923.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347569, intron 3 of 10)	intron (NM_001347569, intron 3 of 10)	35776.0	NM_001347569	17260.0	Mm.24001	NM_025282	ENSMUSG00000005583	Mef2c	5430401D19Rik|9930028G15Rik|AV011172|Mef2	myocyte enhancer factor 2C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-50842369-2	chr14	50842264	50842464	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009351, intron 28 of 54)	B3|SINE|B2	28190.0	NM_009351	21745.0	Mm.318736	NM_009351	ENSMUSG00000006281	Tep1	Tp1	telomerase associated protein 1	protein-coding	1.9697335894217	2.07488961129488	1.86707184009721	2.36532336215011	2.48215716699991	2.08979998155333	1.52544568207106	1.67161247701439	-0.18773044190606	0.843176707093543	0.998431161219273
Merged-chr1-130979658-2	chr1	130979558	130979758	+	931.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39543.0	NM_001009940	329244.0	Mm.131480	NM_001009940	ENSMUSG00000016524	Il19	-	interleukin 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98958474-2	chr11	98958374	98958574	+	777.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009024, intron 2 of 8)	intron (NM_009024, intron 2 of 8)	-1997.0	NM_001176528	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80117975-2	chr10	80117875	80118075	+	940.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301853, intron 1 of 8)	intron (NM_001301853, intron 1 of 8)	2172.0	NM_001301854	20869.0	Mm.44231	NM_011492	ENSMUSG00000003068	Stk11	AA408040|Lkb1|Par-4|R75140	serine/threonine kinase 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-134081318-4	chr1	134081223	134081423	+	989.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2168.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-77912073-4	chr9	77911959	77912159	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5306.0	NM_134255	68801.0	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-26914862-2	chr2	26914762	26914962	+	746.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_013677, exon 5 of 9)	exon (NM_013677, exon 5 of 9)	-1559.0	NM_013678	20931.0	Mm.389260	NM_013678	ENSMUSG00000014873	Surf2	Surf-2	surfeit gene 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120582155-4	chr11	120582050	120582250	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133796)	promoter-TSS (NM_133796)	-530.0	NM_133796	192662.0	Mm.30016	NM_133796	ENSMUSG00000025132	Arhgdia	5330430M07Rik|Gdi-1|Rho-GDI|RhoDGI|RhoGDI-1	Rho GDP dissociation inhibitor (GDI) alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36771436-3	chr18	36771345	36771545	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008214, intron 5 of 12)	intron (NM_008214, intron 5 of 12)	-5231.0	NM_173383	213236.0	Mm.234464	NM_173383	ENSMUSG00000044595	Dnd1	BC034897|RBMS4|Ter	DND microRNA-mediated repression inhibitor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-18812306-4	chr16	18812209	18812409	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009862)	promoter-TSS (NM_009862)	15.0	NM_011672	22230.0	Mm.237594	NM_011672	ENSMUSG00000005262	Ufd1	Ufd1l	ubiquitin recognition factor in ER-associated degradation 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-49420740-4	chr2	49420705	49420905	+	754.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30681.0	NM_172663	227867.0	Mm.29167	NM_172663	ENSMUSG00000069495	Epc2	5830499L14|D2Ertd694e	enhancer of polycomb homolog 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-14986775-1	chr8	14986675	14986875	+	636.0	f0_balb.idr	intron (NM_001037736, intron 25 of 27)	intron (NM_001037736, intron 25 of 27)	-24250.0	NM_029116	74901.0	Mm.46675	NM_029116	ENSMUSG00000055675	Kbtbd11	2900016B01Rik|4930465M17Rik|mKIAA0711	kelch repeat and BTB (POZ) domain containing 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-55525300-4	chr1	55525215	55525415	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114663, intron 1 of 5)	Lx9|LINE|L1	119369.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-106817769-4	chr1	106817640	106817840	+	996.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21015.0	NM_009190	20479.0	Mm.18705	NM_009190	ENSMUSG00000009907	Vps4b	8030489C12Rik|Skd1	vacuolar protein sorting 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-43221288-2	chr15	43221188	43221388	+	608.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1C|Other|Other	-50470.0	NM_001357956	239405.0	Mm.193274	NM_172815	ENSMUSG00000051920	Rspo2	2610028F08Rik|AA673245|D430027K22|ftls	R-spondin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-121040665-3	chr4	121040549	121040749	+	773.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007741, intron 1 of 31)	MIR|SINE|MIR	1083.0	NM_007741	12840.0	Mm.269384	NM_007741	ENSMUSG00000028626	Col9a2	AI427499|Col9a-2	collagen, type IX, alpha 2	protein-coding	0.872054390135941	0.626584691641977	0.948394068308461	1.15229307266953	0.879280972497552	0.628535897229483	1.20517836969952	1.15956384462894	0.38474799111186	0.796168298032808	1
Merged-chr19-18687747-3	chr19	18687626	18687826	+	816.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026120, intron 3 of 7)	RSINE1|SINE|B4	16946.0	NM_026120	67383.0	Mm.306602	NM_026120	ENSMUSG00000024726	Carnmt1	2410127L17Rik	carnosine N-methyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-99240262-1	chr12	99240162	99240362	+	588.0	f0_balb.idr	intron (NM_183186, intron 4 of 5)	intron (NM_183186, intron 4 of 5)	-77454.0	NR_038130	67639.0	Mm.87374	NR_038130	ENSMUSG00000113210	4930474N09Rik	-	RIKEN cDNA 4930474N09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31481721-2	chr14	31481621	31481821	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359849, intron 4 of 4)	L1_Mur3|LINE|L1	13037.0	NM_001359850	67011.0	Mm.291731	NM_025907	ENSMUSG00000021891	Mettl6	1600013P15Rik|AI467521|AU020711	methyltransferase like 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-14988970-4	chr8	14988836	14989036	+	852.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037736, intron 25 of 27)	intron (NM_001037736, intron 25 of 27)	-22089.0	NM_029116	74901.0	Mm.46675	NM_029116	ENSMUSG00000055675	Kbtbd11	2900016B01Rik|4930465M17Rik|mKIAA0711	kelch repeat and BTB (POZ) domain containing 11	protein-coding	2.83191899629594	4.20861437044258	4.06842904672014	4.01921066543298	4.59050432849287	5.18174745114797	3.87805918492457	5.29570349380029	1.25220313051452	0.00833514536983332	0.0955878060911696
Merged-chr7-6153806-2	chr7	6153706	6153906	+	771.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013012, intron 1 of 2)	intron (NM_001013012, intron 1 of 2)	2165.0	NM_001013012	67109.0	Mm.3254	NM_001013012	ENSMUSG00000046792	Zfp787	2210018M03Rik|Znf787	zinc finger protein 787	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-34763017-2	chr5	34762917	34763117	+	687.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_010414, intron 1 of 66)	intron (NM_010414, intron 1 of 66)	1277.0	NM_010414	15194.0	Mm.209071	NM_010414	ENSMUSG00000029104	Htt	AI256365|C430023I11Rik|Hd|Hdh|IT15	huntingtin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-39735900-5	chr1	39735682	39735882	+	861.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14793.0	NM_001145660	619289.0	Mm.334107	NM_001145660	ENSMUSG00000057173	Rfx8	4933400N17Rik	regulatory factor X 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25688061-6	chr7	25687879	25688079	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011577, exon 1 of 7)	exon (NM_011577, exon 1 of 7)	977.0	NM_011577	21803.0	Mm.248380	NM_011577	ENSMUSG00000002603	Tgfb1	TGF-beta1|TGFbeta1|Tgfb|Tgfb-1	transforming growth factor, beta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134614938-4	chr6	134614828	134615028	+	793.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026345, intron 3 of 3)	intron (NM_026345, intron 3 of 3)	17560.0	NM_026345	67729.0	Mm.57648	NM_026345	ENSMUSG00000032718	Mansc1	9130403P13Rik	MANSC domain containing 1	protein-coding	0.581911234212065	0.143674530051544	0.452025170014612	0.133979877029461	0.128034022239267	0.627713449331837	0.585811399548017	0.134716007985001	0.345164776975669	0.865399262852974	1
Merged-chr5-122669300-4	chr5	122669199	122669399	+	981.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038845, intron 8 of 12)	B4A|SINE|B4	-13298.0	NR_106195	102465902.0		NR_106195	ENSMUSG00000099324	Mir8115	Gm28012|mmu-mir-8115	microRNA 8115	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-146450591-4	chr3	146450492	146450692	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001293672, exon 1 of 7)	exon (NM_001293672, exon 1 of 7)	125.0	NM_001293672	74245.0	Mm.45396	NM_028836	ENSMUSG00000028189	Ctbs	2210401K11Rik|CTB	chitobiase, di-N-acetyl-	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101319401-2	chr15	101319272	101319472	+	800.900024	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR49|LTR|ERVK	26160.0	NR_033803	77717.0	Mm.391998	NR_033803	ENSMUSG00000075408	6030408B16Rik	AI225877	RIKEN cDNA 6030408B16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-61666150-2	chr11	61666050	61666250	+	587.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_027817, intron 3 of 4)	intron (NM_027817, intron 3 of 4)	12829.0	NM_027817	71520.0	Mm.202760	NM_027817	ENSMUSG00000004837	Grap	8430435N19Rik|BB233594	GRB2-related adaptor protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-69629906-1	chr18	69629806	69630006	+	542.0	f0_balb.idr	intron (NM_001361128, intron 8 of 19)	intron (NM_001361128, intron 8 of 19)	283746.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-65698533-4	chr18	65698431	65698631	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177028, intron 1 of 14)	intron (NM_177028, intron 1 of 14)	263.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	4.01863713041638	4.65755801949122	2.93564750995473	3.74544758185714	3.94858923250905	3.93563530452199	3.95343676933643	4.33599277415345	0.111211009977226	0.823592074935018	0.998431161219273
Merged-chr3-18243193-6	chr3	18243099	18243299	+	853.772217	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007825, exon 1 of 6)	exon (NM_007825, exon 1 of 6)	139.0	NM_007825	13123.0	Mm.316000	NM_007825	ENSMUSG00000039519	Cyp7b1	AW261589|D3Ertd552e|hct-1	cytochrome P450, family 7, subfamily b, polypeptide 1	protein-coding	1.05264047782941	0.924873488928768	0.603980015338207	0.953795052277253	0.560228338494148	0.632340107916399	0.429259701865729	0.423007916541312	-2.73876951997266	0.110283856009252	1
Merged-chr12-102703455-3	chr12	102703339	102703539	+	756.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172584, intron 1 of 9)	intron (NM_172584, intron 1 of 9)	1430.0	NM_172584	217837.0	Mm.482192	NM_172584	ENSMUSG00000057963	Itpk1	BC031182	inositol 1,3,4-triphosphate 5/6 kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-84810085-1	chr7	84809985	84810185	+	617.0	f1_c57bl6.idr	Intergenic	Lx3A|LINE|L1	-43486.0	NM_146415	258410.0	Mm.484702	NM_146415	ENSMUSG00000070460	Olfr291	MOR254-2	olfactory receptor 291	protein-coding	0.327060640371712	0.0625478723795484	0.0560736472373354	0.805625953994578	0.0439298318225326	0.0640028558803458	0.0575043761010076	0.814486072188457	-0.327679673328491	0.880221452204533	1
Merged-chr15-27987916-3	chr15	27987826	27988026	+	825.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081302, intron 1 of 56)	intron (NM_001081302, intron 1 of 56)	37922.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-170343331-4	chr2	170343243	170343443	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13018.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81813428-2	chr15	81813328	81813528	+	606.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_017376, intron 1 of 3)	intron (NM_017376, intron 1 of 3)	2014.0	NM_017376	21685.0	Mm.270278	NM_017376	ENSMUSG00000022389	Tef	2310028D20Rik	thyrotroph embryonic factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-62530394-4	chr10	62530311	62530511	+	983.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2966.0	NM_001358965	19073.0	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-64580857-2	chr17	64580757	64580957	+	544.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C|LTR|ERVK	-20792.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-18687102-4	chr16	18687003	18687203	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57165.0	NM_213614	18951.0	Mm.20365	NM_213614	ENSMUSG00000072214	Sept5	Cdcrel-1|Cdcrel1|Pnutl1	septin 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-39421947-2	chr10	39421847	39422047	+	661.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001122892, intron 2 of 12)	intron (NM_001122892, intron 2 of 12)	52148.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-136888912-6	chr4	136888807	136889007	+	889.328674	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_007574)	TTS (NM_007574)	-2730.0	NM_009777	12260.0	Mm.2570	NM_009777	ENSMUSG00000036905	C1qb	-	complement component 1, q subcomponent, beta polypeptide	protein-coding	0.00133205862859725	0.270144948154044	0.0205189820476921	1.34014627505001	0.00314613950646764	0.0316260242652764	0.590562721162663	0.0146475322087352	-1.98062221848932	0.344283315301057	1
Merged-chr7-125618190-4	chr7	125618083	125618283	+	939.741699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021887, intron 1 of 8)	intron (NM_021887, intron 1 of 8)	14754.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	4.97556121461222	5.05438759527852	3.75414815955332	4.70236214448769	5.11626581669325	3.82649635975598	4.73005497553316	4.94770934742875	0.044755803732446	0.914622715732111	0.998431161219273
Merged-chr10-13686267-4	chr10	13686185	13686385	+	914.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025446, intron 4 of 5)	intron (NM_025446, intron 4 of 5)	-133143.0	NM_001347361	56535.0	Mm.282711	NM_019961	ENSMUSG00000019809	Pex3	1700014F15Rik|2810027F19Rik|2900010N04Rik	peroxisomal biogenesis factor 3	protein-coding	2.77343731818389	2.53153834615919	3.71584938860278	3.32126397051971	3.5847957829871	3.56059009653615	2.92282566853052	4.19765763465241	0.74444165263161	0.22183754778236	0.713567533054356
Merged-chr12-111470617-4	chr12	111470512	111470712	+	995.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15211.0	NM_001033248	212539.0	Mm.81916	NM_001033248	ENSMUSG00000010529	Gm266	-	predicted gene 266	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-66611831-4	chr9	66611717	66611917	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18702.0	NM_001302116	235441.0	Mm.32465	NM_144937	ENSMUSG00000032376	Usp3	AA409661|BC017156	ubiquitin specific peptidase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-121124905-1	chr2	121124805	121125005	+	546.0	f0_balb.idr	Intergenic	Intergenic	-15114.0	NM_001160424	640543.0	Mm.478785	NM_001160424	ENSMUSG00000079103	Tgm7	TGMZ|TGz	transglutaminase 7	protein-coding	-1.50675405783187	-1.47480407555155	-1.48446601390606	-1.49240261774653	-1.35335735514863	-1.32068389364755	-1.48227876284625	-1.33895556989684	2.0511169751117	0.517438978536882	1
Merged-chr9-71160799-4	chr9	71160570	71160770	+	988.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_073483, intron 1 of 6)	intron (NR_073483, intron 1 of 6)	1963.0	NM_001271843	64008.0	Mm.449427	NM_022026	ENSMUSG00000032204	Aqp9	1700020I22Rik|AI266899|AQP-9	aquaporin 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-38300903-4	chr15	38300818	38301018	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289471)	promoter-TSS (NM_001289471)	-207.0	NM_001289471	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-94647786-2	chr11	94647686	94647886	+	782.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177752, intron 5 of 8)	intron (NM_177752, intron 5 of 8)	5968.0	NM_177752	268465.0	Mm.358937	NM_177752	ENSMUSG00000039055	Eme1	6820428D13	essential meiotic structure-specific endonuclease 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-40172858-2	chr15	40172758	40172958	+	656.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10251.0	NR_155349	102636151.0	Mm.321976	NR_155349	ENSMUSG00000115367	Gm33301	-	predicted gene, 33301	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-156857506-4	chr2	156857423	156857623	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015591, intron 1 of 2)	intron (NR_015591, intron 1 of 2)	5422.0	NR_015591	74487.0	Mm.490465	NR_015591	ENSMUSG00000085741	5430405H02Rik	2610307N17Rik	RIKEN cDNA 5430405H02 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-55817633-1	chr4	55817533	55817733	+	607.0	f0_balb.idr	Intergenic	Intergenic	-285158.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191222139-2	chr1	191222039	191222239	+	595.400024	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2315.0	NR_151547	100504360.0	Mm.16927	NM_001033188		D730003I15Rik	AU020850	RIKEN cDNA D730003I15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101144921-4	chr15	101144825	101145025	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001277259, exon 12 of 12)	3' UTR (NM_001277259, exon 12 of 12)	16403.0	NM_001277257	11482.0	Mm.279542	NM_009612	ENSMUSG00000000530	Acvrl1	AI115505|AI427544|Acvrlk1|Alk1	activin A receptor, type II-like 1	protein-coding	4.48635205092665	4.53099412181762	2.6325301579172	4.46222910457303	4.77749857329305	4.13828154258784	3.85418650627558	4.1900985682357	0.0944427851134494	0.851224687400439	0.998431161219273
Merged-chr6-125640743-1	chr6	125640643	125640843	+	570.0	f0_balb.idr	intron (NM_011708, intron 27 of 51)	intron (NM_011708, intron 27 of 51)	-49676.0	NM_153589	243634.0	Mm.333398	NM_153589	ENSMUSG00000038115	Ano2	BC033409|Tmem16b	anoctamin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128409257-2	chr10	128409133	128409333	+	777.0	f0_c57.idr|f1_balb.idr	promoter-TSS (NM_001358973)	promoter-TSS (NM_001358973)	-53.0	NM_001358973	69917.0	Mm.46614	NM_027257	ENSMUSG00000025374	Nabp2	2610036N15Rik|Obfc2b|SSB1	nucleic acid binding protein 2	protein-coding	2.30361982873755	1.8046974997688	1.91619249838939	2.51124740018628	2.47745650200475	2.14569203481564	1.32182179168601	2.24802167112175	-0.112855426966694	0.905980923178665	0.998431161219273
Merged-chr6-83069117-3	chr6	83069016	83069216	+	773.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009392, exon 2 of 3)	exon (NM_009392, exon 2 of 3)	1109.0	NM_009392	21909.0	Mm.37	NM_009392	ENSMUSG00000068327	Tlx2	Enx|Hox11L.1|Hox11l1|NCX|Ncx1|Tlx1l1|Tlx1l2	T cell leukemia, homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-120467190-4	chr6	120467101	120467301	+	930.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008359, intron 1 of 12)	intron (NM_008359, intron 1 of 12)	4004.0	NM_008359	16172.0	Mm.4481	NM_008359	ENSMUSG00000002897	Il17ra	AW538159|Cdw217|Il17r|VDw217	interleukin 17 receptor A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97546089-4	chr11	97546004	97546204	+	967.091675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018873, intron 3 of 19)	(CA)n|Simple_repeat|Simple_repeat	29022.0	NM_018873	56013.0	Mm.342665	NM_018873	ENSMUSG00000038453	Srcin1	P140|SNIP|mKIAA1684|p140Cap	SRC kinase signaling inhibitor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-75434284-4	chr9	75434203	75434403	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7221.0	NM_001039522	235497.0	Mm.41508	NM_001006122	ENSMUSG00000042487	Leo1	Gm185	Leo1, Paf1/RNA polymerase II complex component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-103606357-4	chr2	103606240	103606440	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178890, intron 1 of 16)	intron (NM_178890, intron 1 of 16)	40030.0	NM_178890	99382.0	Mm.35850	NM_178890	ENSMUSG00000032724	Abtb2	AW539457|BPOZ-2	ankyrin repeat and BTB (POZ) domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-50380057-2	chr11	50379957	50380157	+	891.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347487, intron 4 of 12)	intron (NM_001347487, intron 4 of 12)	2338.0	NM_001347487	59013.0	Mm.21740	NM_021510	ENSMUSG00000007850	Hnrnph1	AI642080|E430005G16Rik|Hnrnph|Hnrph1	heterogeneous nuclear ribonucleoprotein H1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56929747-2	chr17	56929647	56929847	+	827.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_022328, intron 1 of 11)	intron (NM_022328, intron 1 of 11)	5641.0	NM_022328	64144.0	Mm.148748	NM_022328	ENSMUSG00000024212	Mllt1	AA407901|BAM11|ENL|LTG19	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-19416249-6	chr13	19416126	19416326	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-20413.0	NM_001347485	76205.0	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-38421960-3	chr3	38421855	38422055	+	936.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	62861.0	NM_001167883	99696.0	Mm.290937	NM_001033198	ENSMUSG00000044864	Ankrd50	AI662170|E430012K20Rik|mKIAA1223|mKIAA3019	ankyrin repeat domain 50	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-21702853-4	chr16	21702765	21702965	+	906.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8200.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65562323-4	chr9	65562212	65562412	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153119, intron 3 of 5)	intron (NM_153119, intron 3 of 5)	17775.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	4.36098836225468	4.65983239340894	5.18890501817098	4.26990303073782	5.04977025214919	4.992235890983	5.54910734024016	6.05464690441363	0.967182768924522	0.00781247557348354	0.0915968227335396
Merged-chr7-100780456-3	chr7	100780371	100780571	+	802.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178764, intron 2 of 8)	intron (NM_178764, intron 2 of 8)	73836.0	NM_001362170	319604.0	Mm.260362	NM_178764	ENSMUSG00000029461	Fam168a	2610030B18Rik|B930006L02Rik|mKIAA0280	family with sequence similarity 168, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31570021-2	chr14	31569921	31570121	+	652.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009937, intron 1 of 16)	intron (NM_009937, intron 1 of 16)	7362.0	NM_009937	382864.0	Mm.239821	NM_009937	ENSMUSG00000057606	Colq	A130034K24Rik	collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-92835336-2	chr1	92835236	92835436	+	618.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016696, intron 1 of 8)	intron (NM_016696, intron 1 of 8)	3691.0	NM_016696	14733.0	Mm.297976	NM_016696	ENSMUSG00000034220	Gpc1	AI462976	glypican 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116027984-4	chr11	116027873	116028073	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-2343.0	NM_001286006	217331.0	Mm.297706	NM_172569	ENSMUSG00000020770	Unk	B230379M23Rik|Unkh|Zc3h5|Zc3hdc5|mKIAA1753	unkempt family zinc finger	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-172451307-4	chr1	172451176	172451376	+	756.645874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24084.0	NM_029612	98365.0	Mm.150050	NM_029612	ENSMUSG00000026548	Slamf9	2310026I04Rik|AI462096|CD2F-10|CD84-H1|Cd2f10|SF2001	SLAM family member 9	protein-coding	3.88806064907764	3.51397905243553	4.44471922682368	4.37487263841373	4.24370724801708	2.23685467657097	3.85111204245483	4.10752793724628	-0.405111633658807	0.461643718607371	0.921194606787634
Merged-chr1-164336074-4	chr1	164335969	164336169	+	851.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178071, intron 5 of 9)	RLTR12B|LTR|ERVK	28397.0	NM_138314	171567.0	Mm.219428	NM_138314	ENSMUSG00000026575	Nme7	D530024H21Rik|Nm23-M7|Nm23-r7	NME/NM23 family member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46523793-5	chr19	46523729	46523929	+	965.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22181.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-69807667-2	chr14	69807567	69807767	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2122.0	NM_153514	246710.0	Mm.102367	NM_153514	ENSMUSG00000022075	Rhobtb2	Dbc2|E130206H14Rik|mKIAA0717	Rho-related BTB domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-94179068-4	chr8	94178955	94179155	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013602)	promoter-TSS (NM_013602)	-34.0	NM_013602	17748.0	Mm.192991	NM_013602	ENSMUSG00000031765	Mt1	MT-I|Mt-1	metallothionein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-100664106-4	chr15	100664016	100664216	+	902.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001270537, intron 1 of 10)	intron (NM_001270537, intron 1 of 10)	5384.0	NM_001270537	668218.0	Mm.451225	NM_001270537	ENSMUSG00000098112	Bin2	-	bridging integrator 2	protein-coding	2.07115764847834	1.20451940713377	2.03881696955943	1.85964315195253	1.50614213283888	1.46419754541317	2.36371087392333	2.37128458835116	0.448815602244145	0.669624043124324	0.993577811443337
Merged-chr12-80054499-4	chr12	80054379	80054579	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58534.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117845311-4	chr10	117845223	117845423	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024457, intron 1 of 7)	intron (NM_024457, intron 1 of 7)	651.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115279929-3	chr11	115279813	115280013	+	970.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-2944.0	NM_007997	14149.0	Mm.4719	NM_007997	ENSMUSG00000018861	Fdxr	AR	ferredoxin reductase	protein-coding	4.55426431834253	4.68687638730296	5.3719862200715	4.77223859517519	2.63613961631102	3.75839235559232	2.91265764239528	2.80433513935122	-2.44681156506041	4.2545256827604e-07	3.16399581457185e-05
Merged-chr1-43843658-4	chr1	43843517	43843717	+	923.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15909.0	NM_026430	67883.0	Mm.387202	NM_026430	ENSMUSG00000057363	Uxs1	1600025I13Rik|AI451869|AI649125|AW550562	UDP-glucuronate decarboxylase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-145218044-4	chr4	145217967	145218167	+	972.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011610, intron 9 of 9)	intron (NM_011610, intron 9 of 9)	-23062.0	NM_001276465	230895.0	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-25354198-2	chr15	25354098	25354298	+	751.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	59566.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-45787157-2	chr19	45787057	45787257	+	853.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR11C_MM|LTR|ERVK	-3604.0	NM_023799	76055.0	Mm.122725	NM_023799	ENSMUSG00000025220	Mgea5	Hy5|Ncoat|OGA	meningioma expressed antigen 5 (hyaluronidase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-33918971-4	chr2	33918872	33919072	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31026.0	NM_175184	72543.0	Mm.254914	NM_175184	ENSMUSG00000038740	Mvb12b	2610200O14Rik|2610528K11Rik|AI414895|Fam125b	multivesicular body subunit 12B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-32495419-8	chr19	32495347	32495547	+	883.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010799, intron 3 of 4)	intron (NM_010799, intron 3 of 4)	9678.0	NM_010799	17330.0	Mm.255116	NM_010799	ENSMUSG00000024896	Minpp1	AA408516	multiple inositol polyphosphate histidine phosphatase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166826976-4	chr2	166826889	166827089	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085495, intron 2 of 38)	intron (NM_001085495, intron 2 of 38)	21408.0	NM_001085495	99371.0	Mm.297192	NM_001085495	ENSMUSG00000074582	Arfgef2	AI463430|AW493672|BIG2|E230011G24Rik	ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-95834527-4	chr11	95834422	95834622	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025659, intron 3 of 7)	intron (NM_025659, intron 3 of 7)	-7773.0	NM_023121	14710.0	Mm.46299	NM_023121	ENSMUSG00000038811	Gngt2	AV096488	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-20342039-2	chr8	20341939	20342139	+	592.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177408, intron 7 of 9)	intron (NM_001177408, intron 7 of 9)	21163.0	NM_001177408	100040599.0	Mm.491087	NM_001177408	ENSMUSG00000074449	Gm15319	-	predicted gene 15319	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-94458911-1	chr8	94458811	94459011	+	555.0	f1_balb.idr	Intergenic	MLT1A|LTR|ERVL-MaLR	-13852.0	NM_001033207	434341.0	Mm.334720	NM_001033207	ENSMUSG00000074151	Nlrc5	AI451557|AK220210|NOD27	NLR family, CARD domain containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-138444467-2	chr3	138444367	138444567	+	746.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007410, intron 1 of 8)	B3A|SINE|B2	1374.0	NM_007410	11532.0	Mm.3874	NM_007410	ENSMUSG00000028138	Adh5	Adh-5|Adh3|GSNOR	alcohol dehydrogenase 5 (class III), chi polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-57634367-2	chr16	57634280	57634480	+	681.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007739, intron 2 of 3)	intron (NM_007739, intron 2 of 3)	-27513.0	NM_025599	66497.0	Mm.425976	NM_025599	ENSMUSG00000022748	Cmss1	1110001A06Rik|2610528E23Rik|4930572F24Rik|AV099812|AV122629	cms small ribosomal subunit 1	protein-coding	1.98973519718528	2.44831745228456	2.26456977548178	1.8373827842989	2.28626628964392	1.33082888304956	2.16941155707687	1.98291128094196	-0.39870004110648	0.6757733557895	0.99440487726309
Merged-chr3-64039968-2	chr3	64039868	64040068	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVB4_1-I_MM-int|LTR|ERVK	-41674.0	NM_019918	56544.0	Mm.57069	NM_019918	ENSMUSG00000027824	Vmn2r1	Casrl1|EG56544|V2r83	vomeronasal 2, receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-87798807-2	chr17	87798707	87798907	+	653.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199251)	promoter-TSS (NM_199251)	-813.0	NM_199251	210741.0	Mm.312046	NM_199251	ENSMUSG00000050138	Kcnk12	mntk1	potassium channel, subfamily K, member 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150132851-3	chr4	150132750	150132950	+	908.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019741, intron 6 of 13)	intron (NM_019741, intron 6 of 13)	13506.0	NM_019741	56485.0	Mm.260220	NM_019741	ENSMUSG00000028976	Slc2a5	AI526984|Glut5|Slc5a	solute carrier family 2 (facilitated glucose transporter), member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-130845776-3	chr5	130845632	130845832	+	730.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	396940.0	NM_021371	140904.0	Mm.40875	NM_021371	ENSMUSG00000060371	Caln1	9630012C17Rik|Cabp8|MNCb-0849	calneuron 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-66853413-4	chr10	66853326	66853526	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	66958.0	NR_138560	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-122572033-4	chr2	122571934	122572134	+	888.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39243.0	NM_025961	67092.0	Mm.29975	NM_025961	ENSMUSG00000027199	Gatm	1810003P21Rik|AI314789|AT	glycine amidinotransferase (L-arginine:glycine amidinotransferase)	protein-coding	2.1031508103983	1.48815575788707	2.95951523195838	2.95571077389169	2.37184104224716	3.32196599177676	2.89420848342801	2.07517887067464	0.446681341426551	0.599146681506405	0.972303230574462
Merged-chr1-138964143-3	chr1	138964043	138964243	+	984.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166501, intron 1 of 21)	intron (NM_001166501, intron 1 of 21)	434.0	NM_001166501	329260.0	Mm.337604	NM_181347	ENSMUSG00000056268	Dennd1b	4632404N19Rik|4930467M19Rik|6820401H01Rik|F730008N07Rik	DENN/MADD domain containing 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-44933176-4	chr12	44933050	44933250	+	992.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144552, intron 2 of 5)	intron (NM_144552, intron 2 of 5)	141333.0	NM_144552	217517.0	Mm.285400	NM_144552	ENSMUSG00000046314	Stxbp6	BC024598|C85317	syntaxin binding protein 6 (amisyn)	protein-coding	2.37198990977466	2.49854449290515	2.3167987875843	1.61348987940342	2.05362649707556	2.05542109502332	1.4675863520869	1.1980428877417	-1.29231425533422	0.202638159471702	0.688808411556785
Merged-chr4-148678190-2	chr4	148678090	148678290	+	552.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34873.0	NM_001085505	230909.0	Mm.332067	NM_001085505	ENSMUSG00000070577	Gm572	b2b1167Clo	predicted gene 572	protein-coding	-0.971846193215455	-1.32125498911739	-1.1746473638158	-1.33937805479113	-1.35087743162387	-1.31909880171484	-1.32895245901187	-1.3379150641624	-2.21753722681566	0.513113539718258	1
Merged-chr4-53116055-4	chr4	53115948	53116148	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 5 of 49)	intron (NM_013454, intron 5 of 49)	43847.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	5.17043609610745	5.32888803708993	5.80785082627688	5.40822721820202	5.35884648234209	5.65129598294946	4.41249970329878	5.82501694604972	-0.0446890360617536	0.892158423510292	0.998431161219273
Merged-chr4-3778583-2	chr4	3778483	3778683	+	874.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 10 of 12)	intron (NM_001111096, intron 10 of 12)	57072.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69428959-4	chr11	69428846	69429046	+	869.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081330, intron 77 of 85)	intron (NM_001081330, intron 77 of 85)	-15271.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-34176258-3	chr10	34176185	34176385	+	693.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172508, intron 2 of 5)	intron (NM_172508, intron 2 of 5)	31266.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-79683131-2	chr1	79683031	79683231	+	559.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	-11159.0	NM_183027	252903.0	Mm.32409	NM_183027	ENSMUSG00000054702	Ap1s3	1190009B22|Jr2|[s]3A	adaptor-related protein complex AP-1, sigma 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-122924024-4	chr4	122923911	122924111	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37177.0	NM_029662	76574.0	Mm.331842	NM_029662	ENSMUSG00000028655	Mfsd2a	1700018O18Rik|Mfsd2|NLS1	major facilitator superfamily domain containing 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-115831475-2	chr4	115831375	115831575	+	750.333374	f1_balb.idr|f1_c57bl6.idr	exon (NM_175308, exon 2 of 4)	exon (NM_175308, exon 2 of 4)	3383.0	NM_175308	100465.0	Mm.35571	NM_175308	ENSMUSG00000028709	Mob3c	AW822253|D130076I06Rik|Mobkl2c	MOB kinase activator 3C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100506159-2	chr7	100506059	100506259	+	817.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_153527, exon 5 of 8)	exon (NM_153527, exon 5 of 8)	8656.0	NM_153527	69387.0	Mm.278554	NM_153527	ENSMUSG00000030708	Dnajb13	1700014P03Rik|Tsarg	DnaJ heat shock protein family (Hsp40) member B13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-93684534-1	chr16	93684434	93684634	+	622.0	f1_balb.idr	intron (NM_173047, intron 1 of 2)	intron (NM_173047, intron 1 of 2)	1315.0	NM_173047	109857.0	Mm.4512	NM_173047	ENSMUSG00000022947	Cbr3	1110001J05Rik|C81353	carbonyl reductase 3	protein-coding	-0.158290336399915	-0.140313503416106	-0.146168052660039	-0.150707862615469	0.00263654341443455	-0.138998290909393	0.353021137985054	0.787499214247944	4.0294800873392	0.0711417122191688	1
Merged-chr1-39847256-4	chr1	39847160	39847360	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040465)	promoter-TSS (NR_040465)	70.0	NR_040465	73426.0	Mm.396239	NR_040465	ENSMUSG00000101634	1700066B17Rik	-	RIKEN cDNA 1700066B17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-63112216-1	chr13	63112116	63112316	+	863.0	f0_balb.idr	intron (NM_001289926, intron 5 of 15)	intron (NM_001289926, intron 5 of 15)	-127813.0	NR_110520	72061.0	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	-1.50561175621786	-1.47331375025452	-1.02203377115094	-1.49110398925286	-1.50334449591826	-1.47119716082604	-1.48086985756939	-1.48966786617048	-2.07776723614574	0.550394407909386	1
Merged-chr19-38011562-4	chr19	38011457	38011657	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302140, intron 3 of 53)	intron (NM_001302140, intron 3 of 53)	32020.0	NM_001099634	226101.0	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding	5.41576868841577	4.86832172825196	4.71239604978673	4.81116799596439	5.87198831926152	6.11540861883512	5.49525840649174	5.80812670815988	0.968368060251055	0.000956475237474187	0.0187922323677106
Merged-chr18-10533772-4	chr18	10533680	10533880	+	800.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083628, intron 19 of 32)	intron (NM_001083628, intron 19 of 32)	76572.0	NM_001081222	77805.0	Mm.210996	NM_144542	ENSMUSG00000024293	Esco1	A930014I12Rik	establishment of sister chromatid cohesion N-acetyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-32389675-4	chr19	32389568	32389768	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033198, intron 1 of 1)	CpG-7452	452.0	NR_033198	67188.0	Mm.391160	NR_033198	ENSMUSG00000097787	2700046G09Rik	-	RIKEN cDNA 2700046G09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-70257670-4	chr9	70257565	70257765	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181072, intron 1 of 27)	intron (NM_181072, intron 1 of 27)	50315.0	NM_181072	71602.0	Mm.249311	NM_181072	ENSMUSG00000032220	Myo1e	2310020N23Rik|9130023P14Rik|AA407778|myosin-1e|myr 3	myosin IE	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-9074954-3	chr15	9074857	9075057	+	681.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040395, intron 1 of 12)	intron (NM_001040395, intron 1 of 12)	3697.0	NM_001040395	68646.0	Mm.244226	NM_001040395	ENSMUSG00000022253	Nadk2	MNADK|Nadkd1	NAD kinase 2, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-36267183-2	chr17	36267083	36267283	+	599.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_024468, exon 3 of 7)	exon (NM_024468, exon 3 of 7)	4248.0	NM_001357889	79263.0	Mm.40624	NM_024468	ENSMUSG00000045409	Trim39	1100001D15Rik|E130103K13Rik|RBCC-B30.2|Rnf23|mKIAA4179|tfp	tripartite motif-containing 39	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-86947731-3	chr10	86947632	86947832	+	980.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138673, intron 17 of 68)	L2a|LINE|L2	60210.0	NM_138673	192188.0	Mm.279611	NM_138673	ENSMUSG00000035459	Stab2	FEEL-2|FELL|MFEEL-2|STAB-2	stabilin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-99317595-1	chr13	99317495	99317695	+	598.0	f0_balb.idr	Intergenic	Intergenic	27083.0	NM_026873	68927.0	Mm.276502	NM_026873	ENSMUSG00000021650	Ptcd2	1190005P08Rik	pentatricopeptide repeat domain 2	protein-coding	-0.145569185526501	-0.277453570438389	-0.282101071164729	-0.285688957334619	-0.290762699445885	-0.0754912695440637	-0.0967575199417934	0.532426909845171	2.92747944969392	0.199380135884537	1
Merged-chr13-42049238-1	chr13	42049138	42049338	+	1000.0	f0_balb.idr	Intergenic	Intergenic	-2783.0	NM_007772	110521.0	Mm.4808	NM_007772	ENSMUSG00000021366	Hivep1	Cryabp1	human immunodeficiency virus type I enhancer binding protein 1	protein-coding	0.666919451011174	0.773172690737769	0.592879383732215	0.936875139828755	1.04678705154156	0.428475011778348	0.597892547463887	0.415539322108725	-0.512027009667337	0.755872234543463	1
Merged-chr4-112256202-3	chr4	112256105	112256305	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177578, intron 4 of 7)	MTD|LTR|ERVL-MaLR	23960.0	NM_001102474	195564.0	Mm.259652	NM_177578	ENSMUSG00000070868	Skint3	A430090E18Rik|Skint-3	selection and upkeep of intraepithelial T cells 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-80167475-2	chr11	80167375	80167575	+	881.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_172133, intron 6 of 10)	B1_Mm|SINE|Alu	13313.0	NM_172133	216991.0	Mm.341520	NM_172133	ENSMUSG00000020709	Adap2	Centa2	ArfGAP with dual PH domains 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-90857092-4	chr8	90857006	90857206	+	866.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177224, intron 2 of 39)	intron (NM_177224, intron 2 of 39)	28271.0	NM_177224	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	2.61585252498776	3.36343856672603	2.32450496109501	1.96913609193111	2.27056291964769	2.55585675355665	1.85821134672582	1.59105585862064	-1.19104762931079	0.169924085365224	0.637374690353883
Merged-chr8-83106192-2	chr8	83106098	83106298	+	792.333374	f0_balb.idr|f1_balb.idr	Intergenic	MLT1F2|LTR|ERVL-MaLR	-59154.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	3.33452580671693	3.5769734002414	3.45068849485229	3.14182153263558	4.85026961253038	3.60440771403167	4.99376226547111	2.77387867103199	1.33126149862663	0.0216170668394644	0.188580878288823
Merged-chr15-62037936-4	chr15	62037824	62038024	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_003368)	promoter-TSS (NR_003368)	-62.0	NR_132747	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-37332356-4	chr3	37332268	37332468	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16285.0	NM_008006	14173.0	Mm.473689	NM_008006	ENSMUSG00000037225	Fgf2	Fgf-2|Fgfb|bFGF	fibroblast growth factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-149518779-2	chr4	149518679	149518879	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023465, intron 1 of 4)	intron (NM_023465, intron 1 of 4)	538.0	NM_023465	67087.0	Mm.299735	NM_023465	ENSMUSG00000028988	Ctnnbip1	1110008O09Rik|2310001I19Rik|AW457332|Catnbip1|Icat	catenin beta interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-61211667-4	chr18	61211600	61211800	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007885)	promoter-TSS (NM_007885)	-104.0	NM_007885	13521.0	Mm.24803	NM_007885	ENSMUSG00000034320	Slc26a2	Dtd|ST-OB	solute carrier family 26 (sulfate transporter), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-38189459-2	chr18	38189359	38189559	+	666.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	20303.0	NM_029357	75599.0	Mm.36560	NM_029357	ENSMUSG00000051375	Pcdh1	2010005A06Rik|AI585920	protocadherin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-35201114-4	chr2	35201011	35201211	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026697)	promoter-TSS (NM_026697)	9.0	NM_026697	68365.0	Mm.198264	NM_026697	ENSMUSG00000026878	Rab14	0610030G24Rik|2810475J17Rik|A830021G03Rik|AI314285|AI649155|D030017L14Rik	RAB14, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-88271691-4	chr7	88271603	88271803	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6382.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90476447-2	chr2	90476347	90476547	+	652.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	2727.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	-0.913700947050176	-0.400958389194046	-0.907481563533457	-0.909820603891973	-0.913123946877299	-0.534089650650601	-0.906812700219259	-0.909412060853313	-0.644978029181113	0.834898325248146	1
Merged-chr15-95820385-2	chr15	95820285	95820485	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 1 of 19)	RMER17B|LTR|ERVK	9687.0	NR_155277	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-41153075-4	chr9	41152970	41153170	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176860, intron 1 of 13)	intron (NM_176860, intron 1 of 13)	4992.0	NM_176860	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	-2.18308165884198	-2.15547475440471	-2.16382331017202	-2.1706810624505	-2.18114370519566	-2.15366558754311	-2.03057248461154	-2.16945352807143	0.759018020146679	0.829933115115583	1
Merged-chr13-81712021-2	chr13	81711921	81712121	+	798.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_028372, intron 1 of 1)	intron (NM_028372, intron 1 of 1)	604.0	NM_028372	72852.0	Mm.31095	NM_028372	ENSMUSG00000051098	Mblac2	2900024O10Rik	metallo-beta-lactamase domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28528178-4	chr17	28528077	28528277	+	980.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2684.0	NM_026290	67645.0	Mm.46170	NM_026290	ENSMUSG00000024223	Armc12	4930511I11Rik|AV041658	armadillo repeat containing 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-34467719-4	chr1	34467584	34467784	+	970.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011206, intron 5 of 14)	C-rich|Low_complexity|Low_complexity	7938.0	NM_011206	19253.0	Mm.361	NM_011206	ENSMUSG00000026126	Ptpn18	FLP1|HSCF|PTP-HSCF|PTP-K1|Ptpk1	protein tyrosine phosphatase, non-receptor type 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171278092-2	chr1	171277992	171278192	+	628.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008911, intron 8 of 12)	intron (NM_008911, intron 8 of 12)	3094.0	NM_008911	19044.0	Mm.266888	NM_008911	ENSMUSG00000062729	Ppox	Ppo	protoporphyrinogen oxidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-23036922-2	chr2	23036822	23037022	+	636.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077190, intron 1 of 10)	B3A|SINE|B2	3319.0	NM_001077192	11308.0	Mm.205647	NM_007380	ENSMUSG00000058835	Abi1	E3B1|NAP1|Ssh3bp1|abi-1	abl-interactor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-56014206-2	chr13	56014106	56014306	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	121344.0	NM_012015	26914.0	Mm.283802	NM_012015	ENSMUSG00000015937	H2afy	H2AF12M|mH2a1|macroH2A1	H2A histone family, member Y	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80899843-2	chr10	80899743	80899943	+	843.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001081688)	TTS (NM_001081688)	1126.0	NM_013895	30055.0	Mm.142132	NM_013895	ENSMUSG00000020219	Timm13	D10Ertd378e|Tim9|Timm9	translocase of inner mitochondrial membrane 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-48829820-4	chr6	48829711	48829911	+	880.033325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11177.0	NM_023056	65963.0	Mm.28385	NM_023056	ENSMUSG00000029810	Tmem176b	1810009M01Rik|Clast1|Lr8	transmembrane protein 176B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27897255-3	chr17	27897175	27897375	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001080769, exon 21 of 21)	3' UTR (NM_001080769, exon 21 of 21)	11967.0	NM_026836	68776.0	Mm.267998	NM_026836	ENSMUSG00000024218	Taf11	1110038O14Rik|AI115401|AL024207|AW552398|PRO214|TAF2I|TAFII28	TATA-box binding protein associated factor 11	protein-coding	0.70978263132085	0.699244732933146	0.0814870856506878	0.0770514613412484	0.217135738332819	0.0885280908104248	0.0827547038358385	0.38539900776375	-1.75002676563543	0.399425233005545	1
Merged-chr1-74286908-2	chr1	74286808	74287008	+	807.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039509, intron 2 of 9)	intron (NM_001039509, intron 2 of 9)	1874.0	NM_001039509	56695.0	Mm.384726	NM_019999	ENSMUSG00000026179	Pnkd	2210013N15Rik|2810403H05Rik|AI854243|Brp17|MNCb-5687|MR-1|Tahccp2	paroxysmal nonkinesiogenic dyskinesia	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-41073977-3	chr8	41073883	41074083	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005863, intron 3 of 13)	intron (NM_001005863, intron 3 of 13)	-19187.0	NM_001005864	102103.0	Mm.149438	NM_001005863	ENSMUSG00000045636	Mtus1	AI481402|ATBP135|Atip1|B430010I23Rik|B430305I03Rik|C85752|Cctsg1-440|MD44|MTSG1|mKIAA1288	mitochondrial tumor suppressor 1	protein-coding	4.53016014099562	4.76411032407837	4.57208275562152	4.89007005250186	3.89657974165751	4.42204119653948	4.21923902553301	4.60926394308375	-0.493460674312732	0.192297751019996	0.670655636962211
Merged-chr7-121072198-2	chr7	121072098	121072298	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030691, intron 1 of 5)	intron (NM_030691, intron 1 of 5)	2332.0	NM_030691	80719.0	Mm.160384	NM_030691	ENSMUSG00000035004	Igsf6	-	immunoglobulin superfamily, member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-55546416-2	chr9	55546316	55546516	+	880.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_027397)	TTS (NM_027397)	5267.0	NM_027397	104360.0	Mm.273996	NM_027397	ENSMUSG00000032318	Isl2	3110001N10Rik	insulin related protein 2 (islet 2)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98597517-3	chr11	98597421	98597621	+	586.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001195544)	promoter-TSS (NM_001195544)	-770.0	NM_001195544	192852.0	Mm.342821	NM_001195544	ENSMUSG00000086545	Lrrc3c	Gm12	leucine rich repeat containing 3C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88607065-4	chr3	88606950	88607150	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9157.0	NM_001198911	16800.0	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	4.67615642626251	4.150060089499	4.65951571076288	3.81242064852919	5.10235726820352	4.45994648517158	4.82735878240074	5.79560743780454	0.938266022598607	0.0200811197925949	0.179890449431224
Merged-chr10-80401106-3	chr10	80400991	80401191	+	846.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1560.0	NM_001306143	17192.0	Mm.7142	NM_013595	ENSMUSG00000035478	Mbd3	AI181826|AU019209	methyl-CpG binding domain protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-13960800-2	chr10	13960656	13960856	+	639.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E-int|LTR|ERVL-MaLR	-5319.0	NM_001358783	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	0.330643775596521	0.718255222254447	1.03381580519182	0.340237576968067	0.830476276184978	0.355113956758788	0.942465701844999	0.341244702600668	0.0197920619232019	0.99156381214316	1
Merged-chr11-101448405-4	chr11	101448297	101448497	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027320)	promoter-TSS (NM_027320)	-15.0	NM_027320	70110.0	Mm.45558	NM_027320	ENSMUSG00000010358	Ifi35	2010008K16Rik|AW986054|IFP35|ifi-35	interferon-induced protein 35	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-25328506-2	chr2	25328406	25328606	+	1000.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_027448, exon 2 of 2)	non-coding (NR_027448, exon 2 of 2)	4065.0	NR_027448	100272219.0	Mm.382103	NR_027448	ENSMUSG00000097345	AA543186	-	expressed sequence AA543186	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-33563305-4	chr17	33563215	33563415	+	913.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053214, intron 1 of 27)	intron (NM_053214, intron 1 of 27)	7608.0	NM_053214	17916.0	Mm.42019	NM_053214	ENSMUSG00000024300	Myo1f	C330006B10Rik	myosin IF	protein-coding	2.44264218889093	2.64124051617248	3.04588483195948	1.60304503596616	2.54843235876242	2.27953125988714	2.34008030618418	1.61030402322096	-0.639937802836187	0.467425768840818	0.923770669682091
Merged-chr14-55605427-1	chr14	55605327	55605527	+	1000.0	f1_balb.idr	intron (NM_001159418, intron 2 of 8)	B2_Mm2|SINE|B2	848.0	NM_001159418	16391.0	Mm.2032	NM_008394	ENSMUSG00000002325	Irf9	Irf-9|Isgf3g|p48	interferon regulatory factor 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80617411-2	chr10	80617311	80617511	+	567.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5369.0	NM_134002	103236.0	Mm.29873	NM_134002	ENSMUSG00000003345	Csnk1g2	2810429I12Rik|AI463719	casein kinase 1, gamma 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-100023077-3	chr15	100022970	100023170	+	672.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR4_MM-int|LTR|ERV1	-15594.0	NM_001159361	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-96416564-4	chr9	96416462	96416662	+	942.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52131.0	NM_001357212	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-32880682-4	chr18	32880587	32880787	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_105779)	promoter-TSS (NR_105779)	-14.0	NR_105779	102465186.0		NR_105779	ENSMUSG00000098252	Mir6361	Gm27612|mmu-mir-6361	microRNA 6361	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-78267991-4	chr11	78267876	78268076	+	886.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001002004, intron 11 of 38)	intron (NM_001002004, intron 11 of 38)	6222.0	NM_001002004	72503.0	Mm.237103	NM_001002004	ENSMUSG00000010277	2610507B11Rik	AU022687|D11Bhm178e|D11Bhm179e|E1|Kiaa0100|mKIAA0100	RIKEN cDNA 2610507B11 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-59073836-4	chr13	59073765	59073965	+	917.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025074, intron 16 of 17)	intron (NM_001025074, intron 16 of 17)	266168.0	NM_001025074	18212.0	Mm.130054	NM_008745	ENSMUSG00000055254	Ntrk2	GP145-TrkB/GP95-TrkB|Tkrb|trk-B|trkB	neurotrophic tyrosine kinase, receptor, type 2	protein-coding	0.995749406340032	0.717297315657027	0.912518739621003	0.694337435431598	1.52348696289445	1.43062184590119	1.68405145987202	0.893402938064462	2.78388743517012	0.0582781542102654	0.356917478410832
Merged-chr4-147867803-3	chr4	147867700	147867900	+	840.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025365, intron 1 of 9)	RMER15|LTR|ERVL	919.0	NM_001025365	28010.0	Mm.250504	NM_133873	ENSMUSG00000029022	Miip	AA553001|AI853621|D4Wsu114e|IIP45	migration and invasion inhibitory protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-137851658-2	chr1	137851558	137851758	+	610.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-114797.0	NR_029795	735252.0		NR_029795	ENSMUSG00000065565	Mir181a-1	Mirn181a-1|Mirn213|miR-213|mir-181a-1|mmu-mir-213	microRNA 181a-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-123357456-2	chr4	123357356	123357556	+	583.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199137, intron 90 of 92)	B3|SINE|B2	-14204.0	NM_007558	12163.0	Mm.439749	NM_007558	ENSMUSG00000032726	Bmp8a	Bmp7r1|OP-2|OP2	bone morphogenetic protein 8a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-165639741-4	chr1	165639635	165639835	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-5194.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141713255-1	chr4	141713155	141713355	+	557.0	f1_balb.idr	intron (NM_001017966, intron 2 of 9)	intron (NM_001017966, intron 2 of 9)	10164.0	NM_001017966	68817.0	Mm.393721	NM_001017966	ENSMUSG00000078515	Ddi2	1110056G13Rik|1700027M01Rik|9130022E05Rik|AI604911|AU040698	DNA-damage inducible protein 2	protein-coding	-2.05752322593321	-2.15521190974092	-2.16307242109104	-2.16952927915413	-2.17938029103484	-2.15350850414045	-2.16129297361887	-2.16837350464794	-0.683654500252594	0.846597994014493	1
Merged-chr3-31391945-2	chr3	31391845	31392045	+	962.583374	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-81626.0	NM_172861	241919.0	Mm.285366	NM_172861	ENSMUSG00000069072	Slc7a14	A930013N06|BC061928	solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-79602427-2	chr7	79602327	79602527	+	733.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019799, intron 3 of 10)	intron (NM_019799, intron 3 of 10)	15230.0	NM_019799	56315.0	Mm.10909	NM_019799	ENSMUSG00000030549	Rhcg	BB065800	Rhesus blood group-associated C glycoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-57835283-4	chr10	57835212	57835412	+	912.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40768.0	NM_020561	57319.0	Mm.2379	NM_020561	ENSMUSG00000019872	Smpdl3a	0610010C24Rik|AI529588|ASM3A|ASML3|ASML3A	sphingomyelin phosphodiesterase, acid-like 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-97208280-4	chr13	97208160	97208360	+	876.133301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9903.0	NM_010422	15212.0	Mm.27816	NM_010422	ENSMUSG00000021665	Hexb	-	hexosaminidase B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83583546-2	chr11	83583446	83583646	+	691.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_036453, intron 1 of 8)	intron (NR_036453, intron 1 of 8)	1485.0	NR_036452	100504464.0	Mm.341706	NR_036452	ENSMUSG00000051832	E230016K23Rik	-	RIKEN cDNA E230016K23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141440803-4	chr7	141440685	141440885	+	925.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001360523, exon 8 of 16)	exon (NM_001360523, exon 8 of 16)	-2911.0	NM_001360724	68267.0	Mm.33729	NM_026646	ENSMUSG00000019082	Slc25a22	1300006L01Rik|AI060884|Gc1	solute carrier family 25 (mitochondrial carrier, glutamate), member 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-9009775-2	chr15	9009675	9009875	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198024, intron 6 of 13)	RLTR20B5_MM|LTR|ERVK	41826.0	NM_198024	223332.0	Mm.321371	NM_198024	ENSMUSG00000048424	Ranbp3l	C130037N17Rik	RAN binding protein 3-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-37249724-3	chr13	37249604	37249804	+	822.3444820000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-95641.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	0.864316896003957	0.964408578179673	0.710626460146779	1.22733309357303	1.48787338974697	1.16879014024357	0.713956580940571	2.04697629164574	1.97573054080765	0.159126841959768	0.618391829904723
Merged-chr8-126936146-3	chr8	126936028	126936228	+	883.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024214, intron 4 of 4)	B2_Mm2|SINE|B2	9793.0	NM_024214	67952.0	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-73117132-4	chr14	73117038	73117238	+	833.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25372.0	NM_001170694	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171478101-2	chr1	171477981	171478181	+	730.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25397.0	NM_019484	56009.0	Mm.389208	NM_019484	ENSMUSG00000060244	Alyref2	C130042O11Rik|REF2|Refbp2	Aly/REF export factor 2	protein-coding	0.239043550459494	0.307161692820055	0.107030124247324	0.102447690054102	0.243360008973793	0.739440808463518	0.108339327526011	0.742539411177448	2.45000963643974	0.215501790571668	1
Merged-chr9-7259918-4	chr9	7259819	7260019	+	883.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-12595.0	NM_008607	17386.0	Mm.5022	NM_008607	ENSMUSG00000050578	Mmp13	Clg|MMP-13|Mmp1	matrix metallopeptidase 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-11188210-2	chr8	11188110	11188310	+	986.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-124595.0	NM_009932	12827.0	Mm.181021	NM_009932	ENSMUSG00000031503	Col4a2	Col4a-2	collagen, type IV, alpha 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-68692907-4	chr7	68692816	68693016	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56322.0	NM_001042592	66412.0	Mm.251199	NM_025549	ENSMUSG00000042659	Arrdc4	2410003C09Rik|AV216361	arrestin domain containing 4	protein-coding	4.86300964839028	4.09796273369547	5.08460969143969	4.51358268588715	5.04446470874737	4.86594441914968	5.39892425185943	4.67285623908151	0.395591595634904	0.271581262569037	0.775081570630341
Merged-chr3-104403863-4	chr3	104403771	104403971	+	818.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	108047.0	NM_001025067	269473.0	Mm.34855	NM_001025067	ENSMUSG00000032913	Lrig2	4632419I10Rik|BB096938|LIG-2	leucine-rich repeats and immunoglobulin-like domains 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-96362967-2	chr9	96362853	96363053	+	644.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357213, intron 1 of 7)	intron (NM_001357213, intron 1 of 7)	762.0	NM_001357213	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	-0.31100293829558	-0.681961485230266	-0.685474528912957	-0.688184073646453	-0.692011594494468	-0.0465253939969776	-0.684699806280589	-0.687710780700492	0.971362747891114	0.738996152889555	1
Merged-chr2-166974290-3	chr2	166974228	166974428	+	814.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109905, intron 1 of 11)	intron (NM_001109905, intron 1 of 11)	-9611.0	NR_111895	20853.0	Mm.73276	NM_011490	ENSMUSG00000039536	Stau1	5830401L18Rik|AW549911|C85792|Stau	staufen double-stranded RNA binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-61101579-1	chr18	61101479	61101679	+	571.0	f0_balb.idr	Intergenic	L1MB5|LINE|L1	-3993.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30587318-2	chr7	30587218	30587418	+	563.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001290573, exon 2 of 37)	exon (NM_001290573, exon 2 of 37)	1408.0	NM_001290573	75410.0	Mm.168688	NM_029274	ENSMUSG00000006307	Kmt2b	2610014H22Rik|Mll2|Wbp7|mKIAA0304	lysine (K)-specific methyltransferase 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-70421996-2	chr9	70421896	70422096	+	872.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007630)	promoter-TSS (NM_007630)	-442.0	NM_007630	12442.0	Mm.22592	NM_007630	ENSMUSG00000032218	Ccnb2	CycB2	cyclin B2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-20393635-4	chr14	20393552	20393752	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_155747)	promoter-TSS (NR_155747)	-18.0	NM_025440	66242.0	Mm.23747	NM_025440	ENSMUSG00000049960	Mrps16	1500011E11Rik|Mprs16|S16mt	mitochondrial ribosomal protein S16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-30357976-4	chr6	30357859	30358059	+	914.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33061.0	NM_172735	232679.0	Mm.29780	NM_172735	ENSMUSG00000039130	Zc3hc1	1110054L24Rik|AU018540|AU019789|HSPC216|Nipa	zinc finger, C3HC type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-44482885-4	chr13	44482796	44482996	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	43169.0	NR_045489	69491.0	Mm.392410	NR_045489	ENSMUSG00000098144	1700029N11Rik	-	RIKEN cDNA 1700029N11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-53596846-4	chr10	53596742	53596942	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025541)	promoter-TSS (NM_025541)	-119.0	NM_025541	66403.0	Mm.272989	NM_025541	ENSMUSG00000019857	Asf1a	2310079C17Rik|C79052	anti-silencing function 1A histone chaperone	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-119396763-2	chr6	119396663	119396863	+	638.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_197985, intron 1 of 7)	B1F1|SINE|Alu	-8029.0	NM_001355692	68465.0	Mm.291826	NM_197985	ENSMUSG00000030168	Adipor2	1110001I14Rik|ADCR2|AI115388|AW554121|D6Ucla1e|Paqr2	adiponectin receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-62499342-2	chr4	62499242	62499442	+	667.166687	f1_balb.idr|f1_c57bl6.idr	exon (NM_024257, exon 2 of 2)	exon (NM_024257, exon 2 of 2)	2858.0	NM_024257	72748.0	Mm.41506	NM_024257	ENSMUSG00000038422	Hdhd3	2810435D12Rik	haloacid dehalogenase-like hydrolase domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-126536664-4	chr4	126536549	126536749	+	903.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-3191.0	NM_153177	76850.0	Mm.86705	NM_153177	ENSMUSG00000042500	Ago4	5730550L01Rik|AI481660|Eif2c4	argonaute RISC catalytic subunit 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75102578-2	chr11	75102478	75102678	+	698.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001002764, intron 13 of 18)	intron (NM_001002764, intron 13 of 18)	-36587.0	NR_030454	735274.0		NR_030454	ENSMUSG00000106252	Mir684-1	Mirn684-1	microRNA 684-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-145306881-4	chr6	145306784	145306984	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56332.0	NR_045598	100039495.0	Mm.121014	NR_045598	ENSMUSG00000086013	Gm15706	-	predicted gene 15706	ncRNA	7.35187474053469	7.30726069230138	7.254988371301	7.13850317326694	6.72244725707562	6.8983391472184	6.85520987007659	6.66163892193211	-0.507903208359902	0.00190557230661484	0.0321712803022019
Merged-chr11-120951025-4	chr11	120950935	120951135	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038654, intron 1 of 4)	CpG	1968.0	NM_001038654	80879.0	Mm.28632	NM_030696	ENSMUSG00000025161	Slc16a3	Mct3|Mct4	solute carrier family 16 (monocarboxylic acid transporters), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141078377-4	chr4	141078293	141078493	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025383)	promoter-TSS (NM_025383)	-36.0	NM_025383	66147.0	Mm.21187	NM_025383	ENSMUSG00000028923	Necap2	1110005F07Rik|AA409105|C78898|NECAP-2	NECAP endocytosis associated 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3997198-2	chr19	3997098	3997298	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001320, intron 3 of 7)	intron (NM_001001320, intron 3 of 7)	-3382.0	NM_025529	66387.0	Mm.259222	NM_025529	ENSMUSG00000110949	Nudt8	2310039H17Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-101694706-4	chr4	101694587	101694787	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22720.0	NM_001122899	16847.0	Mm.259282	NM_010704	ENSMUSG00000057722	Lepr	LEPROT|Leprb|Modb1|OB-RGRP|Obr|db|diabetes|obese-like|obl	leptin receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-27356085-4	chr7	27355984	27356184	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138676)	promoter-TSS (NM_138676)	-76.0	NM_138676	192192.0	Mm.21297	NM_138676	ENSMUSG00000089832	Shkbp1	B930062H15Rik|Sb1	Sh3kbp1 binding protein 1	protein-coding	6.75230509703013	6.27957471510213	7.14913220204632	6.62135534720505	6.35631811591534	6.39372602800791	6.54266510163083	6.19730373966738	-0.387401751250793	0.0736206127239486	0.410199987072827
Merged-chr10-22701697-3	chr10	22701599	22701799	+	854.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178934, intron 4 of 4)	intron (NM_178934, intron 4 of 4)	27733.0	NR_106123	102465768.0		NR_106123	ENSMUSG00000098714	Mir7663	Gm28034|mmu-mir-7663	microRNA 7663	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-57571789-4	chr6	57571723	57571923	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER20C_Mm|LTR|ERVK	-9169.0	NM_025992	67138.0	Mm.297393	NM_025992	ENSMUSG00000029798	Herc6	1700121D12Rik|2510038N07Rik|4930427L17Rik|AI451296|CEB1|Herc5	hect domain and RLD 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-103279975-2	chr15	103279875	103280075	+	917.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_019817, intron 1 of 8)	B2_Mm2|SINE|B2	-5150.0	NR_029766	724064.0		NR_029766	ENSMUSG00000065560	Mir148b	Mirn148b|mir-148b	microRNA 148b	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-16715002-2	chr18	16714902	16715102	+	999.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007664, intron 2 of 15)	intron (NM_007664, intron 2 of 15)	94244.0	NM_007664	12558.0	Mm.257437	NM_007664	ENSMUSG00000024304	Cdh2	CDHN|N-CAD|Ncad	cadherin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-127020258-4	chr3	127020088	127020288	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001327938, intron 14 of 47)	intron (NM_001327938, intron 14 of 47)	-21736.0	NM_178655	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-73491930-6	chr5	73491844	73492044	+	992.611084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178896, intron 1 of 10)	CpG	918.0	NM_178896	100737.0	Mm.220312	NM_178896	ENSMUSG00000051674	Dcun1d4	AI836376	DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	protein-coding	1.84441952941957	3.06379022979542	1.67091803553165	2.50501046988997	1.71609686743513	1.22417809314365	2.69061114299506	1.41880738540149	-1.08854424987322	0.286226259721858	0.790669838252385
Merged-chr18-4055718-4	chr18	4055632	4055832	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTRIS4A|LTR|ERV1	-110100.0	NM_026092	67328.0	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4763465-2	chr16	4763365	4763565	+	560.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357050, intron 2 of 5)	intron (NM_001357050, intron 2 of 5)	6519.0	NM_001357050	15369.0	Mm.272866	NM_010443	ENSMUSG00000004070	Hmox2	HO-2|HO2	heme oxygenase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-27220213-4	chr7	27220101	27220301	+	924.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181593, intron 1 of 6)	intron (NM_181593, intron 1 of 6)	8396.0	NM_181593	233011.0	Mm.30963	NM_181593	ENSMUSG00000003752	Itpkc	9130023N17Rik	inositol 1,4,5-trisphosphate 3-kinase C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-118868059-4	chr10	118867940	118868140	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001014390, intron 2 of 2)	CpG	863.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-99963081-3	chr11	99962984	99963184	+	865.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14609.0	NM_001085527	435286.0	Mm.457964	NM_001085527	ENSMUSG00000078255	Krtap9-5	-	keratin associated protein 9-5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34947033-2	chr17	34946933	34947133	+	605.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3975.0	NR_028527	100217427.0		NR_028527	ENSMUSG00000093009	Snord52	MBII-297	small nucleolar RNA, C/D box 52	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-83888029-1	chr7	83887929	83888129	+	591.0	f1_balb.idr	Intergenic	B2_Mm2|SINE|B2	-3688.0	NM_030705	80889.0	Mm.272998	NM_030705	ENSMUSG00000070462	Tlnrd1	AW061151|Mesdc1	talin rod domain containing 1	protein-coding	-1.58994551673671	-1.55912852307891	-1.56844783632235	-1.57610299769523	-1.18549093183599	-1.55710898902261	-1.56633814807757	-1.57473272746952	1.78703309985663	0.610309988231842	1
Merged-chr11-116436153-4	chr11	116436039	116436239	+	917.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176902, intron 2 of 2)	intron (NM_176902, intron 2 of 2)	1926.0	NR_003376	664849.0	Mm.258466	NR_003376		Gm7367	EG664849	1110014K08Rik pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-80070981-2	chr9	80070881	80071081	+	838.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001311110, intron 1 of 23)	intron (NM_001311110, intron 1 of 23)	4078.0	NM_146003	215351.0	Mm.28232	NM_146003	ENSMUSG00000034252	Senp6	2810017C20Rik|E130319N12Rik|Susp1|mKIAA0797	SUMO/sentrin specific peptidase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-84598008-2	chr2	84597861	84598061	+	584.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51519.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-93387654-4	chr15	93387548	93387748	+	998.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001347097, exon 7 of 8)	exon (NM_001347097, exon 7 of 8)	10686.0	NM_001347097	67197.0	Mm.293181	NM_026025	ENSMUSG00000022635	Zcrb1	2700088M22Rik|Madp-1	zinc finger CCHC-type and RNA binding motif 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-112752414-4	chr13	112752324	112752524	+	961.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48353.0	NM_008903	19012.0	Mm.291029	NM_008247	ENSMUSG00000021759	Plpp1	Hic53|Hpic53|LPP-1|LPP1|PAP-2a|PAP2-alpha|PAP2a|Ppap2a|mPAP	phospholipid phosphatase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-113513235-2	chr7	113513135	113513335	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027379)	promoter-TSS (NM_027379)	-599.0	NM_001285831	67420.0	Mm.206919	NM_026143	ENSMUSG00000030759	Far1	2600011M19Rik|2900034E22Rik|3732409C05Rik|AI850429|Mlstd2	fatty acyl CoA reductase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52078738-4	chr13	52078626	52078826	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-18015.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-105581325-4	chr7	105581223	105581423	+	929.18335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001253886, exon 1 of 14)	5' UTR (NM_001253886, exon 1 of 14)	168.0	NM_001253885	11785.0	Mm.38469	NM_009685	ENSMUSG00000037032	Apbb1	Fe65|Rir	amyloid beta (A4) precursor protein-binding, family B, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-51567465-3	chr6	51567357	51567557	+	857.2333369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361577, intron 2 of 6)	intron (NM_001361577, intron 2 of 6)	22164.0	NM_001361577	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-21782992-2	chr19	21782892	21783092	+	800.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_031997, intron 2 of 24)	intron (NM_031997, intron 2 of 24)	4652.0	NM_031997	83921.0	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-47396136-4	chr6	47396030	47396230	+	741.395874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57602.0	NM_001355551	26965.0	Mm.87611	NM_012042	ENSMUSG00000029686	Cul1	Cul-1	cullin 1	protein-coding	3.32107279426682	1.62205472586062	2.85039847436326	3.43266503423556	2.64076993479565	2.17526595828777	3.41810764971826	3.68060750702143	0.229015565664104	0.767652425068488	0.998431161219273
Merged-chr11-116451090-2	chr11	116450990	116451190	+	790.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033267, intron 2 of 13)	L1M4|LINE|L1	3257.0	NM_001033267	217341.0	Mm.387352	NM_001033267	ENSMUSG00000070331	Qrich2	Gm66	glutamine rich 2	protein-coding	-1.0197847170788	-0.997907469650695	-1.01122437597739	-0.133164474989291	-1.01910344542556	-0.995021640496898	-1.0082097202833	-1.01474285911258	-3.16350991712545	0.326819850740887	1
Merged-chr11-20140888-1	chr11	20140788	20140988	+	734.0	f1_balb.idr	Intergenic	RLTR16B_MM|LTR|ERVK	-27937.0	NM_146243	66713.0	Mm.259045	NM_146243	ENSMUSG00000020152	Actr2	4921510D23Rik|AA409782|Arp2|D6Ertd746e	ARP2 actin-related protein 2	protein-coding	0.564818533141964	0.665769342545053	0.332769641181177	0.908129593544808	0.322758728371416	1.00600036087835	0.333966457299499	0.329327328191805	-0.559910111628073	0.769282582924312	1
Merged-chr1-36311093-2	chr1	36310993	36311193	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290727, intron 1 of 5)	MIRb|SINE|MIR	3360.0	NM_001172205	214855.0	Mm.34316	NM_145996	ENSMUSG00000037447	Arid5a	D430024K22Rik|Mrf1	AT rich interactive domain 5A (MRF1-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-43458790-3	chr17	43458673	43458873	+	883.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001081178, exon 21 of 21)	3' UTR (NM_001081178, exon 21 of 21)	44000.0	NM_008585	17287.0	Mm.5346	NM_008585	ENSMUSG00000023914	Mep1a	AI098089|AW107200|Mep-1|Mep-1a|Mep1	meprin 1 alpha	protein-coding	2.86328489078707	2.28678970336222	3.23911993860476	2.66242855391744	2.88627251203455	2.11418538049271	2.64760617073362	2.56779887162568	-0.44298700962779	0.547920468041693	0.95796208018571
Merged-chr1-165781686-2	chr1	165781586	165781786	+	765.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6995.0	NM_001113393	12503.0	Mm.217308	NM_031162	ENSMUSG00000005763	Cd247	4930549J05Rik|A430104F18Rik|AW552088|Cd3|Cd3-eta|Cd3-zeta|Cd3h|Cd3z|Cd3zeta|T3z|Tcrk|Tcrz	CD247 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-87528593-2	chr6	87528493	87528693	+	749.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037727, intron 1 of 10)	intron (NM_001037727, intron 1 of 10)	4666.0	NM_001037727	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3800893-2	chr4	3800793	3800993	+	769.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17B|LTR|ERVK	34762.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-93506208-1	chr2	93506108	93506308	+	637.0	f1_balb.idr	Intergenic	MTE2b-int|LTR|ERVL-MaLR	-43258.0	NM_001136055	12521.0	Mm.4261	NM_007656	ENSMUSG00000027215	Cd82	AA682076|AL023070|C33|IA4|Kai1|Tspan27	CD82 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-60977990-4	chr18	60977899	60978099	+	990.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009792, exon 4 of 7)	exon (NM_009792, exon 4 of 7)	14445.0	NM_001286809	12322.0	Mm.131530	NM_009792	ENSMUSG00000024617	Camk2a	CaMKII|R74975|mKIAA0968	calcium/calmodulin-dependent protein kinase II alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115694621-2	chr11	115694521	115694721	+	774.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001313936, intron 2 of 5)	B1_Mur4|SINE|Alu	4913.0	NM_001313937	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-14096989-1	chr8	14096889	14097089	+	624.0	f1_balb.idr	intron (NM_001145965, intron 1 of 14)	CpG	1114.0	NM_172910	244310.0	Mm.404697	NM_172910	ENSMUSG00000047495	Dlgap2	6430596N04Rik|Dap-2|Dap2|Sapap2	DLG associated protein 2	protein-coding	0.0393951407785785	1.18065813566092	0.0564604672622132	0.0501026069657504	0.0410004649093703	0.48514316120156	0.0582658035896247	0.553972036626295	-0.82220479387722	0.695925186069127	1
Merged-chr5-99371788-3	chr5	99371703	99371903	+	683.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-118876.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-102235972-2	chr7	102235872	102236072	+	678.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_111937, intron 2 of 5)	intron (NR_111937, intron 2 of 5)	12944.0	NR_111937	233575.0	Mm.302013	NM_145583	ENSMUSG00000030990	Pgap2	1810006G21Rik|C76649|Frag1	post-GPI attachment to proteins 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102354649-4	chr12	102354547	102354747	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177620, intron 4 of 9)	intron (NM_177620, intron 4 of 9)	71006.0	NM_001161365	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	2.84208704992325	3.64525348156694	2.85895225129003	3.50028506895858	3.41745503400268	2.06690113330862	3.62494357514623	3.70661066848318	0.146621535762928	0.821163884347533	0.998431161219273
Merged-chr12-105061360-1	chr12	105061260	105061460	+	589.0	f1_c57bl6.idr	Intergenic	Intergenic	28742.0	NM_028419	73046.0	Mm.29128	NM_028419	ENSMUSG00000021102	Glrx5	-	glutaredoxin 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-20743024-7	chr18	20742934	20743134	+	951.4761960000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019737, intron 1 of 8)	intron (NM_019737, intron 1 of 8)	3370.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-81440735-3	chr6	81440632	81440832	+	795.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	454931.0	NR_106091	102465711.0		NR_106091	ENSMUSG00000106154	Mir7232	mmu-mir-7232	microRNA 7232	ncRNA	2.49456788346365	2.02805213649591	1.20417640840276	1.90276007694142	2.30541840614662	1.23686074632837	1.8270837953459	2.42633704314179	0.100683871889807	0.925536039188803	0.998431161219273
Merged-chr12-51678525-4	chr12	51678396	51678596	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001172098, intron 1 of 15)	MTD|LTR|ERVL-MaLR	-12470.0	NM_001329699	11782.0	Mm.386749	NM_021710	ENSMUSG00000020955	Ap4s1	AI314282	adaptor-related protein complex AP-4, sigma 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34294496-1	chr17	34294396	34294596	+	829.0	f1_balb.idr	Intergenic	Intergenic	-6725.0	NM_010378	14960.0	Mm.235338	NM_010378	ENSMUSG00000036594	H2-Aa	Aalpha|H-2Aa|H2Aa|I-Aalpha|IAalpha|Ia-1|Ia1	histocompatibility 2, class II antigen A, alpha	protein-coding	2.45479527615465	3.63839044734881	3.6780470898089	3.64849828157497	3.90058550136145	3.12171137076581	4.30143232381777	4.13373048712473	0.734296625698104	0.186879232243587	0.664414370345287
Merged-chr10-127568899-2	chr10	127568799	127568999	+	870.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008512, exon 36 of 89)	exon (NM_008512, exon 36 of 89)	-34340.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	-0.0214304026010044	-0.446357914366526	-0.449667075067539	-0.172334871402808	-0.103868002625246	-0.445609067687236	-0.448939031894711	-0.451763139748297	-1.01215616986498	0.699321964777757	1
Merged-chr12-118198927-3	chr12	118198828	118199028	+	768.333313	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	5' UTR (NM_010060, exon 1 of 82)	5' UTR (NM_010060, exon 1 of 82)	115.0	NM_010060	13411.0	Mm.390540	NM_010060	ENSMUSG00000018581	Dnah11	Dnahc11|avc4|b2b1203Clo|b2b1279Clo|b2b1289Clo|b2b1727Clo|b2b598Clo|iv|lrd	dynein, axonemal, heavy chain 11	protein-coding	4.07439184571607	3.84965309466733	2.24574123922418	3.1504051916402	3.65077281679634	3.38319756119612	3.6127367789822	2.83504430572516	-0.158589033453804	0.800613210163191	0.998431161219273
Merged-chr17-73055402-2	chr17	73055338	73055538	+	731.0	f0_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52547.0	NM_001177968	225010.0	Mm.329194	NM_001081071	ENSMUSG00000054469	Lclat1	AI181996|Agpat8|Alcat1|Gm91|Lycat	lysocardiolipin acyltransferase 1	protein-coding	0.606861158986397	1.18890695591408	1.26441968829401	0.621622218204133	0.920732199405801	1.19978651302619	0.632873589937938	1.51806703766635	0.668600430301006	0.667314353870827	0.992615623325338
Merged-chr8-46735731-4	chr8	46735624	46735824	+	824.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045750, intron 2 of 2)	intron (NR_045750, intron 2 of 2)	3791.0	NR_045750	100503498.0	Mm.187358	NR_045750	ENSMUSG00000097534	Gm16675	-	predicted gene, 16675	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-110896085-4	chr13	110895971	110896171	+	974.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131194, intron 2 of 2)	intron (NR_131194, intron 2 of 2)	-7428.0	NR_131193	75139.0	Mm.490931	NR_131193	ENSMUSG00000114472	Gm38397	-	predicted gene, 38397	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-84516604-4	chr10	84516500	84516700	+	987.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17288.0	NM_175451	216197.0	Mm.334999	NM_175451	ENSMUSG00000046841	Ckap4	5630400A09Rik|CLIMP-63|P63	cytoskeleton-associated protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-24472953-2	chr7	24472853	24473053	+	700.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011113, intron 5 of 6)	intron (NM_011113, intron 5 of 6)	-9070.0	NM_153112	260299.0	Mm.178322	NM_153112	ENSMUSG00000054793	Cadm4	Igdf4c|Igsf4c|Tsll2	cell adhesion molecule 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102694990-4	chr12	102694887	102695087	+	914.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172584, intron 1 of 9)	intron (NM_172584, intron 1 of 9)	9882.0	NM_172584	217837.0	Mm.482192	NM_172584	ENSMUSG00000057963	Itpk1	BC031182	inositol 1,3,4-triphosphate 5/6 kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-56571522-2	chr14	56571422	56571622	+	791.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001014996, intron 1 of 16)	CpG	324.0	NM_001014996	219103.0	Mm.212525	NM_001014996	ENSMUSG00000064128	Cenpj	4932437H03Rik|CPAP|Gm81|LAP|LIP1|Sas4	centromere protein J	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-104442403-6	chr11	104442325	104442525	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081045)	promoter-TSS (NM_001081045)	-134.0	NM_001081045	76719.0	Mm.136418	NM_001081045	ENSMUSG00000018412	Kansl1	1700081L11Rik|9430041J06Rik|mKIAA1267	KAT8 regulatory NSL complex subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-76596499-3	chr12	76596378	76596578	+	846.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013675, intron 32 of 35)	intron (NM_013675, intron 32 of 35)	-48553.0	NR_046044	100504549.0	Mm.440349	NR_046044	ENSMUSG00000112388	AI463170	-	expressed sequence AI463170	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-61407977-4	chr11	61407907	61408107	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-29932.0	NM_026183	67473.0	Mm.100741	NM_026183	ENSMUSG00000010122	Slc47a1	1300013J15Rik|AI036982|MATE1|mMATE1	solute carrier family 47, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-16351528-2	chr16	16351428	16351628	+	849.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025947, intron 1 of 17)	Lx9|LINE|L1	7047.0	NM_001276341	74006.0	Mm.218820	NM_152816	ENSMUSG00000022789	Dnm1l	6330417M19Rik|AI450666|Dlp1|Dnmlp1|Drp1|python	dynamin 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-42103127-4	chr13	42103014	42103214	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007772, intron 2 of 8)	intron (NM_007772, intron 2 of 8)	51093.0	NM_007772	110521.0	Mm.4808	NM_007772	ENSMUSG00000021366	Hivep1	Cryabp1	human immunodeficiency virus type I enhancer binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126661782-1	chr8	126661682	126661882	+	772.0	f1_c57bl6.idr	Intergenic	Intergenic	-68346.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-137846736-4	chr3	137846648	137846848	+	966.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR35B_MM|LTR|ERVL	-17739.0	NM_001316995	51788.0	Mm.117541	NM_016750	ENSMUSG00000037894	H2afz	H2A.Z|H2a.z-1	H2A histone family, member Z	protein-coding	1.16684939000681	1.26411802661261	1.67032285261867	1.6236029552713	1.44383609335401	1.60780378191724	1.79647150802268	1.63185593052172	0.624425687894391	0.576265219344911	0.965286201225318
Merged-chr2-17081516-1	chr2	17081416	17081616	+	578.0	f0_balb.idr	Intergenic	RMER3D-int|LTR|ERVK	-67790.0	NR_040632	75069.0	Mm.50378	NR_040632		4930515L03Rik	-	RIKEN cDNA 4930515L03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-84350454-4	chr1	84350349	84350549	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65804.0	NM_001003948	98496.0	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4|P-CLI1	phosphotyrosine interaction domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-59726666-2	chr9	59726566	59726766	+	800.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18902.0	NM_001033498	546134.0	Mm.297580	NM_001033498	ENSMUSG00000074259	Gramd2	BC064463|Gramd2a	GRAM domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-82867133-4	chr7	82867048	82867248	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175366)	promoter-TSS (NM_175366)	-185.0	NM_175366	108797.0	Mm.306789	NM_175366	ENSMUSG00000057706	Mex3b	4931439A04Rik|M-04814|Rkhd3|mKIAA2009	mex3 RNA binding family member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-136756265-4	chr3	136756151	136756351	+	904.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008913, intron 1 of 13)	intron (NM_008913, intron 1 of 13)	86185.0	NM_001293622	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-166802158-4	chr1	166802065	166802265	+	866.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-120320.0	NM_001347135	240894.0	Mm.246610	NM_172844	ENSMUSG00000026560	Fmo9	4831428F09Rik	flavin containing monooxygenase 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-143473257-2	chr5	143473157	143473357	+	684.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144915, intron 3 of 14)	intron (NM_144915, intron 3 of 14)	8764.0	NM_144915	231871.0	Mm.469963	NM_144915	ENSMUSG00000039206	Daglb	E330036I19Rik	diacylglycerol lipase, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-59814900-2	chr4	59814800	59815000	+	763.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172468, intron 1 of 8)	intron (NM_172468, intron 1 of 8)	9250.0	NM_172468	209131.0	Mm.259705	NM_172468	ENSMUSG00000028385	Snx30	4732481H14Rik|C030041J06Rik	sorting nexin family member 30	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-146644064-1	chr6	146643964	146644164	+	707.0	f1_balb.idr	intron (NM_025315, intron 1 of 3)	intron (NM_025315, intron 1 of 3)	1485.0	NM_025315	108098.0	Mm.26212	NM_025315	ENSMUSG00000030291	Med21	0610007L03Rik|AI449604|D19234|D6Ertd782e|Srb7|Surb7	mediator complex subunit 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-155066987-4	chr4	155066879	155067079	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001042407)	promoter-TSS (NM_001042407)	-51.0	NM_001042407	668173.0	Mm.133114	NM_001042407	ENSMUSG00000029047	Pex10	AV128229|Gm142	peroxisomal biogenesis factor 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-35451724-2	chr11	35451624	35451824	+	852.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011412, intron 4 of 35)	intron (NM_011412, intron 4 of 35)	-165092.0	NR_029799	723924.0		NR_029799	ENSMUSG00000065583	Mir218-2	Mirn218-2|mir-218-2	microRNA 218-2	ncRNA	-0.953721354153451	-1.41025554057125	-1.42001056191158	-1.42802362688808	-1.44024889148474	-1.40814158675276	-1.41780223890411	-1.42658929208844	-2.11310844444413	0.543369238581748	1
Merged-chr14-34673854-4	chr14	34673763	34673963	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001301330)	promoter-TSS (NM_001301330)	-65.0	NM_001004436	218914.0	Mm.27957	NM_001004436	ENSMUSG00000041408	Wapl	A530089A20Rik|BC037674|DIF-2|FOE|Wapal	WAPL cohesin release factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-21161867-3	chr1	21161732	21161932	+	847.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56743.0	NM_001290679	75712.0	Mm.304763	NM_029398	ENSMUSG00000025933	Tmem14a	5730496E24Rik|C85783|PTD011	transmembrane protein 14A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-74917918-4	chr14	74917764	74917964	+	736.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033439, intron 1 of 19)	intron (NM_001033439, intron 1 of 19)	30013.0	NM_001252132	380916.0	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-84814718-4	chr16	84814606	84814806	+	754.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023844, intron 5 of 9)	intron (NM_023844, intron 5 of 9)	20270.0	NM_001358500	11957.0	Mm.353	NM_016755	ENSMUSG00000022890	Atp5j	CF6	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F	protein-coding	2.59369182239251	2.48818501491334	2.49831610783016	1.68937853336486	1.90956532700659	1.98359196531687	2.19918036987945	1.26817177484189	-1.20299151676329	0.207599875281743	0.69600874728866
Merged-chr4-3089724-1	chr4	3089624	3089824	+	659.0	f0_balb.idr	Intergenic	GSAT_MM|Satellite|Satellite	-82359.0	NM_001167534	100312470.0	Mm.480297	NM_001167534	ENSMUSG00000115072	Vmn1r2	Gm11776	vomeronasal 1 receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70333779-3	chr14	70333671	70333871	+	785.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144808, intron 1 of 9)	intron (NM_144808, intron 1 of 9)	14662.0	NM_001135152	213053.0	Mm.270647	NM_144808	ENSMUSG00000022094	Slc39a14	FAD-123|ZIP-14|Zip14|fad123	solute carrier family 39 (zinc transporter), member 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-29380745-4	chr19	29380640	29380840	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021893, intron 4 of 6)	intron (NM_021893, intron 4 of 6)	13302.0	NM_021893	60533.0	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-32477443-2	chr6	32477343	32477543	+	540.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175750, intron 3 of 31)	intron (NM_175750, intron 3 of 31)	-33698.0	NR_040277	319849.0	Mm.440860	NR_040277	ENSMUSG00000086763	Plxna4os1	B230378P21Rik	plexin A4, opposite strand 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-133381246-2	chr2	133381146	133381346	+	742.625	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-170913.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-25072598-1	chr3	25072498	25072698	+	559.0	f1_c57bl6.idr	Intergenic	Intergenic	-288592.0	NM_001326288	635702.0	Mm.448351	NM_001326288	ENSMUSG00000102758	Naaladl2	2810043G22Rik|EG635702|Gm1021	N-acetylated alpha-linked acidic dipeptidase-like 2	protein-coding	0.286567820614728	0.0353661932633396	0.793593440018751	0.452953024277958	0.0192395047131564	0.234683574000136	0.0309785178180727	0.0261488269422321	-3.13217852194847	0.132652477589909	1
Merged-chr1-36053692-3	chr1	36053701	36053901	+	879.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-14599.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-23968004-5	chr17	23967915	23968115	+	811.900024	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7215.0	NM_013921	30943.0	Mm.142568	NM_013921	ENSMUSG00000024124	Prss30	2010015P21Rik|Disp|Disp1|Tmprss8	protease, serine 30	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101231650-2	chr11	101231550	101231750	+	792.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5187.0	NM_007970	14055.0	Mm.5027	NM_007970	ENSMUSG00000006920	Ezh1	ENX-2	enhancer of zeste 1 polycomb repressive complex 2 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132511406-2	chr4	132511306	132511506	+	644.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144907)	promoter-TSS (NM_144907)	-950.0	NM_144907	230784.0	Mm.23608	NM_144907	ENSMUSG00000028893	Sesn2	HI95|SEST2|Ses2	sestrin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46136973-2	chr19	46136873	46137073	+	829.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008852, intron 3 of 3)	CpG	5074.0	NM_007703	12686.0	Mm.21806	NM_007703	ENSMUSG00000038754	Elovl3	CIN-2|Cig30	elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134263583-3	chr6	134263534	134263734	+	807.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 8 of 8)	intron (NM_001303102, intron 8 of 8)	-132695.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-111854370-4	chr8	111854258	111854458	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011801)	promoter-TSS (NM_011801)	-48.0	NM_011801	23837.0	Mm.279437	NM_011801	ENSMUSG00000031954	Cfdp1	AA408409|Bcnt|Bucentaur|Cfdp|cp27	craniofacial development protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-59203145-4	chr2	59203062	59203262	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 1 of 20)	intron (NM_175464, intron 1 of 20)	42312.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-84685842-4	chr3	84685744	84685944	+	995.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177260, intron 3 of 6)	intron (NM_177260, intron 3 of 6)	19652.0	NM_177260	320782.0	Mm.107370	NM_177260	ENSMUSG00000056498	Tmem154	9930117H01Rik	transmembrane protein 154	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-34927715-4	chr18	34927622	34927822	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144866, intron 2 of 10)	PB1D7|SINE|Alu	4281.0	NM_144866	225363.0	Mm.329353	NM_144866	ENSMUSG00000024360	Etf1	AI463371|D6Ertd109e|ERF|ERF1|SUP45L1|TB3-1	eukaryotic translation termination factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-4615189-2	chr8	4615089	4615289	+	759.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145591, intron 1 of 3)	ORR1A2|LTR|ERVL-MaLR	2019.0	NM_145591	233987.0	Mm.102799	NM_145591	ENSMUSG00000058748	Zfp958	-	zinc finger protein 958	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-145653461-4	chr3	145653371	145653571	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-3486.0	NM_010516	16007.0	Mm.1231	NM_010516	ENSMUSG00000028195	Cyr61	AI325051|CCN1|Igfbp10	cysteine rich protein 61	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139558599-3	chr5	139558473	139558673	+	889.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14675.0	NM_013702	22255.0	Mm.42190	NM_013702	ENSMUSG00000029546	Uncx	Chx4|Uncx4.1	UNC homeobox	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-77271179-2	chr2	77271079	77271279	+	603.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175465, intron 1 of 17)	MT2A|LTR|ERVL	9413.0	NM_175465	228071.0	Mm.27120	NM_175465	ENSMUSG00000042272	Sestd1	1500031J16Rik|A930010O20|Solo/Trio8	SEC14 and spectrin domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-95292819-3	chr12	95292715	95292915	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19C|LTR|ERVK	-399411.0	NM_201518	399558.0	Mm.341948	NM_201518	ENSMUSG00000047414	Flrt2	-	fibronectin leucine rich transmembrane protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-42277771-4	chr10	42277667	42277867	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG-1005	-1025.0	NM_019740	56484.0	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-30443457-2	chr16	30443357	30443557	+	641.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54927.0	NM_001128096	224088.0	Mm.8924	NM_001128094	ENSMUSG00000022533	Atp13a3	AU022875|Gm1745|Gm541|Gm542	ATPase type 13A3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166639238-4	chr2	166639147	166639347	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 3 of 39)	intron (NM_177782, intron 3 of 39)	74585.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101667190-2	chr11	101667090	101667290	+	768.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_025404, exon 2 of 2)	exon (NM_025404, exon 2 of 2)	1649.0	NM_025404	80981.0	Mm.266840	NM_025404	ENSMUSG00000034936	Arl4d	1110036H21Rik|ARL6|AW456149|Arf4l|Arfl4|Arl5	ADP-ribosylation factor-like 4D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-62583295-6	chr4	62583162	62583362	+	876.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019492, intron 3 of 19)	intron (NM_019492, intron 3 of 19)	23415.0	NM_019492	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-31447705-4	chr2	31447588	31447788	+	930.6083369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22582.0	NM_007494	11898.0	Mm.3217	NM_007494	ENSMUSG00000076441	Ass1	AA408052|ASS|Ass-1|fold	argininosuccinate synthetase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131979246-3	chr1	131979144	131979344	+	989.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177628, intron 4 of 4)	L3b|LINE|CR1	8635.0	NM_145977	212980.0	Mm.200307	NM_145977	ENSMUSG00000026435	Slc45a3	2210413P12Rik|AU023994|AU043764|IPCA-6|PRST|Pcanap6	solute carrier family 45, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-34510813-4	chr1	34510713	34510913	+	903.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12401.0	NM_001360855	21755.0	Mm.10725	NM_009355	ENSMUSG00000026125	Prss39	Tesp1	protease, serine 39	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-108112363-1	chr3	108112263	108112463	+	678.0	f0_balb.idr	intron (NM_010306, intron 6 of 8)	intron (NM_010306, intron 6 of 8)	19297.0	NM_008141	14686.0	Mm.439652	NM_008141	ENSMUSG00000009108	Gnat2	AW490837|Gnat-2|Gt-2|Tcalpha	guanine nucleotide binding protein, alpha transducing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-170953405-4	chr1	170953289	170953489	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22682.0	NM_010187	14130.0	Mm.425062	NM_010187	ENSMUSG00000026656	Fcgr2b	AI528646|CD32|F630109E10Rik|Fc[g]RII|FcgRII|Fcgr2|Fcgr2a|Fcr-2|Fcr-3|Ly-17|Ly-m20|LyM-1|Lym-1|fcRII	Fc receptor, IgG, low affinity IIb	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-66216120-4	chr17	66216035	66216235	+	903.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	92615.0	NM_001348292	320209.0	Mm.259605	NM_001003919	ENSMUSG00000035842	Ddx11	4732462I11Rik|CHL1|CHLR1|KRG2|essa15a	DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-80272094-4	chr8	80271981	80272181	+	982.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-214073.0	NM_020259	15245.0	Mm.254493	NM_020259	ENSMUSG00000064325	Hhip	Hhip1	Hedgehog-interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-40699957-1	chr4	40699857	40700057	+	541.0	f1_balb.idr	intron (NM_001025444, intron 1 of 7)	RLTR20B1|LTR|ERVK	2959.0	NM_025545	66408.0	Mm.430710	NM_025545	ENSMUSG00000028411	Aptx	2410016G21Rik|AA388047|FHA-HIT	aprataxin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-44049738-4	chr14	44049645	44049845	+	931.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43327.0	NM_001011876	630952.0		NM_001011876	ENSMUSG00000072598	Ang6	EG630952	angiogenin, ribonuclease A family, member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-93818835-2	chr10	93818735	93818935	+	741.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12720.0	NM_001206851	327799.0	Mm.491598	NM_183199	ENSMUSG00000020020	Usp44	E430004F17Rik	ubiquitin specific peptidase 44	protein-coding	1.30219222302269	0.801751655768282	1.30072455730622	0.96757851645426	1.31407600629439	1.36184127306135	0.791849235543449	1.76112272566736	0.992317595612828	0.468274413090645	0.924409990887115
Merged-chr11-97836854-2	chr11	97836755	97836955	+	887.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010688, exon 7 of 7)	3' UTR (NM_010688, exon 7 of 7)	-3925.0	NM_001080935	68127.0	Mm.110270	NM_001080935	ENSMUSG00000050538	B230217C12Rik	AI840637	RIKEN cDNA B230217C12 gene	protein-coding	1.69001393057791	1.91071172269921	1.17557332229581	3.21779863295017	1.70493390848579	2.36441694366754	1.67299708997475	2.20375658308693	-0.561947320868483	0.583994335223204	0.966805818325085
Merged-chr5-34908467-2	chr5	34908367	34908567	+	792.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010414, intron 66 of 66)	intron (NM_010414, intron 66 of 66)	-7448.0	NM_207277	403174.0	Mm.291225	NM_207277	ENSMUSG00000051246	Msantd1	A930005I04Rik|Gm144	Myb/SANT-like DNA-binding domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81390683-2	chr10	81390583	81390783	+	873.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2381.0	NM_001099917	72273.0	Mm.253147	NM_001099917	ENSMUSG00000078439	Smim24	2210404O07Rik	small integral membrane protein 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-44013086-4	chr4	44013001	44013201	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080384, intron 2 of 5)	CpG	451.0	NM_001290470	12757.0	Mm.298875	NM_016760	ENSMUSG00000028478	Clta	AV026556|Lca	clathrin, light polypeptide (Lca)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-45006055-4	chr13	45005933	45006133	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3937.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	5.29720459488546	4.4414155263789	5.43012033522068	5.58069614096343	5.33415556800591	4.66078201208147	4.77214672063305	5.94752824574421	0.035243986106022	0.923530724580566	0.998431161219273
Merged-chr18-4944613-3	chr18	4944509	4944709	+	942.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-101980.0	NM_153153	225115.0	Mm.136791	NM_153153	ENSMUSG00000024236	Svil	AU024053|B430302E16Rik	supervillin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36760235-4	chr18	36760111	36760311	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026464)	promoter-TSS (NM_026464)	-11.0	NM_026464	67936.0	Mm.271719	NM_026464	ENSMUSG00000042660	Wdr55	2410080P20Rik|C80692	WD repeat domain 55	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-36121008-2	chr17	36120939	36121139	+	830.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010395, intron 3 of 12)	intron (NM_010395, intron 3 of 12)	396.0	NM_010395	15024.0	Mm.426031	NM_010395	ENSMUSG00000079491	H2-T10	H-2T10	histocompatibility 2, T region locus 10	protein-coding	2.00481013026498	1.26082538994713	2.1721323080065	1.75831443388163	1.81242198576085	2.15051333277466	2.18917358545132	1.89904419542639	0.474537058845617	0.633312491754177	0.982417279970648
Merged-chr3-105803143-3	chr3	105803038	105803238	+	849.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1757.0	NM_145541	109905.0	Mm.101922	NM_145541	ENSMUSG00000068798	Rap1a	AI848598|G-22K|Krev-1|Rap1	RAS-related protein 1a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-22299502-2	chr10	22299402	22299602	+	810.599976	f1_balb.idr|f1_c57bl6.idr	intron (NM_009018, intron 6 of 6)	intron (NM_009018, intron 6 of 6)	-7218.0	NR_015465	606736.0	Mm.387042	NR_015465	ENSMUSG00000097352	C920009B18Rik	-	RIKEN cDNA C920009B18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-35708626-2	chr11	35708529	35708729	+	752.0	f0_c57.idr|f1_c57bl6.idr	TTS (NM_011412)	TTS (NM_011412)	-60866.0	NM_145962	211347.0	Mm.255044	NM_145962	ENSMUSG00000018846	Pank3	-	pantothenate kinase 3	protein-coding	1.74923939406743	2.64097960547587	1.8091014501402	2.24157135929955	0.788947518986174	0.873186212865319	0.847131319915639	0.823917699654006	-5.54728000439601	6.20771881109313e-05	0.00209606595578317
Merged-chr14-31252404-2	chr14	31252304	31252504	+	780.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027088, intron 3 of 16)	PB1D9|SINE|Alu	915.0	NM_027088	104416.0	Mm.3779	NM_027088	ENSMUSG00000021901	Bap1	2300006C11Rik|AA989761|AW553466|mKIAA0272|uch-x4	Brca1 associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-77081460-2	chr14	77081360	77081560	+	714.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310649, intron 3 of 3)	intron (NM_001310649, intron 3 of 3)	44688.0	NM_001310649	108811.0	Mm.102168	NM_175369	ENSMUSG00000034795	Ccdc122	4933415L06Rik	coiled-coil domain containing 122	protein-coding	-1.84371485578039	-1.81332821174849	-1.82251738371298	-1.83006564316449	-1.84158176955426	-1.81133687985023	-1.5312619047181	-1.82871450833159	1.60090129203521	0.64914985597185	1
Merged-chr19-29367390-4	chr19	29367302	29367502	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021893)	promoter-TSS (NM_021893)	-36.0	NM_021893	60533.0	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-19990633-2	chr14	19990533	19990733	+	880.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13384.0	NM_001285909	14702.0	Mm.41737	NM_010315	ENSMUSG00000043004	Gng2	-	guanine nucleotide binding protein (G protein), gamma 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-100419527-2	chr15	100419427	100419627	+	594.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008732, intron 1 of 16)	intron (NM_008732, intron 1 of 16)	3528.0	NM_001146161	18174.0	Mm.234608	NM_008732	ENSMUSG00000023030	Slc11a2	DCT1|DMT1|Nramp2|mk|van	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-4873491-2	chr1	4873391	4873591	+	745.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159750, intron 2 of 9)	MTA_Mm|LTR|ERVL-MaLR	15163.0	NM_001159751	21399.0	Mm.207263	NM_011541	ENSMUSG00000033813	Tcea1	S-II	transcription elongation factor A (SII) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-103510442-4	chr15	103510326	103510526	+	859.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357980, intron 1 of 14)	intron (NM_001357980, intron 1 of 14)	3300.0	NM_001357980	18574.0	Mm.390792	NM_008800	ENSMUSG00000022489	Pde1b	Pde1b1	phosphodiesterase 1B, Ca2+-calmodulin dependent	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-32473838-2	chr16	32473738	32473938	+	668.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009981, exon 9 of 9)	3' UTR (NM_009981, exon 9 of 9)	14041.0	NM_145932	106407.0	Mm.476915	NM_145932	ENSMUSG00000035699	Slc51a	AV001382|AW261577|D630035O19Rik|OSTalpha|Osta	solute carrier family 51, alpha subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-22129793-1	chr15	22129693	22129893	+	568.0	f0_balb.idr	Intergenic	RMER19B2|LTR|ERVK	585191.0	NM_001165971	545091.0	Mm.475598	NM_001165971		Hnrnpa1l2-ps2	EG545091|Gm5803	heterogeneous nuclear ribonucleoprotein A1-like 2, pseudogene 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-49181828-2	chr13	49181728	49181928	+	962.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5719.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-131268409-2	chr6	131268321	131268521	+	756.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21059.0	NM_008462	16633.0	Mm.4783	NM_008462	ENSMUSG00000030187	Klra2	Klra30|Ly49b	killer cell lectin-like receptor, subfamily A, member 2	protein-coding	0.179175484101812	0.404481219196285	0.193747738346325	0.509373620248348	0.865846604207614	0.965979256792467	0.195304015689503	0.18924450338813	1.85000993941944	0.349380046853703	1
Merged-chr9-107724392-4	chr9	107724296	107724496	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13921.0	NM_011349	20350.0	Mm.12903	NM_011349	ENSMUSG00000034684	Sema3f	Sema4|Semak	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-98460032-2	chr12	98459932	98460132	+	656.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001316666, intron 4 of 4)	B3A|SINE|B2	-63812.0	NR_136759	105245437.0	Mm.446375	NR_136759	ENSMUSG00000113613	Gm40893	-	predicted gene, 40893	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-97971466-3	chr3	97971427	97971627	+	824.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41354.0	NM_001033779	433632.0	Mm.212421	NM_001033779		Gm5544	EG433632	predicted gene 5544	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117436855-2	chr8	117436755	117436955	+	783.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001163262, exon 10 of 21)	exon (NM_001163262, exon 10 of 21)	-16168.0	NR_106045	102466801.0		NR_106045	ENSMUSG00000099062	Mir7077	Gm27774|mmu-mir-7077	microRNA 7077	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84224212-1	chr8	84224112	84224312	+	630.0	f1_balb.idr	exon (NM_172503, exon 8 of 14)	exon (NM_172503, exon 8 of 14)	12830.0	NM_172503	212168.0	Mm.117094	NM_172503	ENSMUSG00000035671	Zswim4	D330002I24|E130119J17Rik	zinc finger SWIM-type containing 4	protein-coding	0.914744673299071	0.572835760172752	0.696959388692411	0.371156172548413	0.740933931319454	0.384753933859747	0.377911447842885	0.998398918637213	0.0163796742873906	0.992566966681254	1
Merged-chr14-17903247-4	chr14	17903150	17903350	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113417, intron 2 of 9)	intron (NM_001113417, intron 2 of 9)	-78394.0	NM_009380	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-100144898-2	chr6	100144798	100144998	+	941.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16C|LTR|ERVL	142460.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-28657292-1	chr19	28657192	28657392	+	817.5	f0_balb.idr	intron (NM_175459, intron 2 of 10)	intron (NM_175459, intron 2 of 10)	-20932.0	NR_045330	320176.0	Mm.406716	NR_045330	ENSMUSG00000097735	D930032P07Rik	-	RIKEN cDNA D930032P07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-71235337-4	chr6	71235222	71235422	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009762, intron 4 of 8)	intron (NM_009762, intron 4 of 8)	26959.0	NM_001160127	12180.0	Mm.234274	NM_009762	ENSMUSG00000055027	Smyd1	4632404M21Rik|Bop|C78565|Zmynd18	SET and MYND domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-111037597-4	chr9	111037495	111037695	+	861.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008522, intron 14 of 16)	intron (NM_008522, intron 14 of 16)	18303.0	NM_008522	17002.0	Mm.282359	NM_008522	ENSMUSG00000032496	Ltf	Csp82|Lf|MMS10R|Ms10r	lactotransferrin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-68058827-4	chr15	68058714	68058914	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	200042.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-67061087-4	chr13	67061003	67061203	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166218)	promoter-TSS (NM_001166218)	67.0	NM_001166218	78251.0	Mm.297247	NM_001166218	ENSMUSG00000090641	Zfp712	4921504N20Rik|mszf31|mszf89	zinc finger protein 712	protein-coding	6.83329218117661	6.27903201298427	6.73646189181343	6.1017064131277	6.53563867926214	6.72613428716414	6.81261971356096	6.19681958688844	0.0627105903041729	0.781505381942785	0.998431161219273
Merged-chr8-35708022-4	chr8	35707921	35708121	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	118538.0	NM_027998	71908.0	Mm.37817	NM_027998	ENSMUSG00000055976	Cldn23	2310014B08Rik	claudin 23	protein-coding	4.6075896598331	5.31985714616535	4.56570445376006	4.5403658363899	3.98492470293129	4.18465058863096	5.88476390136609	4.56234410893703	0.106660073178431	0.81476392573116	0.998431161219273
Merged-chr9-118723181-3	chr9	118723103	118723303	+	924.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 1 of 13)	ORR1D2|LTR|ERVL-MaLR	11511.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-59254606-4	chr4	59254476	59254676	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5475.0	NR_105031	101055769.0	Mm.421401	NR_105031		Gm12596	-	predicted gene 12596	ncRNA	-0.871559037381726	-0.856638476330222	-0.861583137644455	-0.865283896969569	-0.870614807574855	-0.855415350575532	0.207976872237578	-0.86463319879494	3.89850570063307	0.158045432396183	1
Merged-chr9-37255325-2	chr9	37255225	37255425	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_020258, exon 1 of 18)	exon (NM_020258, exon 1 of 18)	413.0	NM_020258	56857.0	Mm.440037	NM_020258	ENSMUSG00000032122	Slc37a2	G3PP|Slc37a1|cI-2|ci2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-16609835-1	chr1	16609735	16609935	+	637.0	f1_balb.idr	intron (NM_001271016, intron 1 of 6)	B2_Mm1t|SINE|B2	9503.0	NM_025773	66799.0	Mm.122430	NM_025773	ENSMUSG00000025939	Ube2w	6130401J04Rik	ubiquitin-conjugating enzyme E2W (putative)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-17898518-1	chr17	17898418	17898618	+	596.0	f1_balb.idr	Intergenic	B3|SINE|B2	10694.0	NM_008039	14289.0	Mm.378918	NM_008039	ENSMUSG00000052270	Fpr2	E330010I07Rik|Fpr-rs2	formyl peptide receptor 2	protein-coding	-0.429165910719733	-0.873612895455471	-0.880042310359133	-0.882147047040279	-0.515285789036623	-0.870994549976101	-0.879439369138014	-0.881779851595733	-0.36230783815378	0.907723332250447	1
Merged-chr18-61120111-4	chr18	61120015	61120215	+	921.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037859, intron 11 of 21)	intron (NM_001037859, intron 11 of 21)	2647.0	NR_105949	102466212.0		NR_105949	ENSMUSG00000098389	Mir6983	Gm27496|mmu-mir-6983	microRNA 6983	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-144231568-3	chr5	144231476	144231676	+	817.477783	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-7961.0	NM_001356993	70381.0	Mm.239412	NM_027410	ENSMUSG00000066621	Tecpr1	2210010N04Rik|mKIAA1358	tectonin beta-propeller repeat containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-54847751-2	chr18	54847651	54847851	+	613.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	142429.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-14179440-4	chr10	14179323	14179523	+	900.091675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	213044.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-60937506-4	chr1	60937406	60937606	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MamGypLTR1d|LTR|Gypsy	28481.0	NM_001281976	12477.0	Mm.390	NM_009843	ENSMUSG00000026011	Ctla4	Cd152|Ctla-4|Ly-56	cytotoxic T-lymphocyte-associated protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-129095402-4	chr6	129095299	129095499	+	617.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153506, intron 2 of 4)	intron (NM_153506, intron 2 of 4)	5504.0	NM_153506	232409.0	Mm.30870	NM_153506	ENSMUSG00000030155	Clec2e	Clra|clr-a	C-type lectin domain family 2, member e	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-117700100-1	chr12	117700000	117700200	+	552.0	f1_c57bl6.idr	intron (NM_175930, intron 13 of 27)	RLTR26B_MM|LTR|ERVK	-143761.0	NM_146040	217946.0	Mm.281149	NM_146040	ENSMUSG00000021175	Cdca7l	BC006933|JPO2	cell division cycle associated 7 like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-38963841-2	chr6	38963741	38963941	+	553.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 3 of 12)	L1MB4|LINE|L1	44855.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-117891766-4	chr5	117891691	117891891	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008712, intron 2 of 27)	intron (NM_008712, intron 2 of 27)	24952.0	NM_008712	18125.0	Mm.44249	NM_008712	ENSMUSG00000029361	Nos1	2310005C01Rik|N-NOS|NC-NOS|NO|NOS|NOS-I|Nos-1|bNOS|nNOS	nitric oxide synthase 1, neuronal	protein-coding	1.17192972790404	0.801380482676982	1.50358162217907	0.745488999967592	1.65584029594818	1.76580148525639	3.20762385757497	0.749949080136827	2.86104735838046	0.0253176575258019	0.211140816724679
Merged-chr2-119740746-4	chr2	119740607	119740807	+	989.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1630.0	NM_146125	228550.0	Mm.65337	NM_146125	ENSMUSG00000027296	Itpka	-	inositol 1,4,5-trisphosphate 3-kinase A	protein-coding	2.42877347925007	2.00648585084102	1.55825021860891	1.52063058295943	2.90020172436436	2.75159754103437	1.95439588270392	2.04193270651925	1.27115577143129	0.169283693821419	0.636165929777423
Merged-chr1-59670245-4	chr1	59670130	59670330	+	979.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009460, intron 1 of 4)	intron (NM_009460, intron 1 of 4)	604.0	NM_009460	22218.0	Mm.362118	NM_009460	ENSMUSG00000026021	Sumo1	GMP1|PIC1|SENTRIN|SMT3|SMT3H3|SMTP3|SUMO-1|Smt3C|Ubl1	small ubiquitin-like modifier 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-26453249-2	chr12	26453149	26453349	+	724.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021384, intron 2 of 5)	intron (NM_021384, intron 2 of 5)	3203.0	NM_021384	58185.0	Mm.24045	NM_021384	ENSMUSG00000020641	Rsad2	2510004L01Rik|Vig1|cig5	radical S-adenosyl methionine domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-68130104-4	chr7	68130001	68130201	+	975.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010513, intron 2 of 20)	intron (NM_010513, intron 2 of 20)	134132.0	NM_030101	78444.0	Mm.425468	NM_030101	ENSMUSG00000030553	Pgpep1l	C330024D12Rik	pyroglutamyl-peptidase I-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-63336818-2	chr10	63336718	63336918	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159589, intron 1 of 7)	intron (NM_001159589, intron 1 of 7)	2217.0	NM_019812	93759.0	Mm.351459	NM_019812	ENSMUSG00000020063	Sirt1	AA673258|SIR2L1|Sir2|Sir2a|Sir2alpha	sirtuin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21527375-2	chr9	21527275	21527475	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001198794, intron 1 of 6)	B2_Mm1t|SINE|B2	1198.0	NM_206536	382062.0	Mm.325205	NM_206536	ENSMUSG00000057191	AB124611	Gm1706	cDNA sequence AB124611	protein-coding	-1.2111396805985	-1.32488695513244	-1.33469168374779	-1.34274557975998	-0.971233355067795	-1.32276222954009	-1.3324721081028	-1.34130393622446	1.06681499898033	0.75787734025643	1
Merged-chr19-5952567-2	chr19	5952467	5952667	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164057, intron 7 of 17)	intron (NM_001164057, intron 7 of 17)	11639.0	NM_001164057	18969.0	Mm.209931	NM_008893	ENSMUSG00000024833	Pola2	AI573378	polymerase (DNA directed), alpha 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-56689372-4	chr19	56689275	56689475	+	959.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32997.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-24821702-2	chr5	24821602	24821802	+	558.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_053075, intron 1 of 7)	intron (NM_053075, intron 1 of 7)	20659.0	NM_053075	19744.0	Mm.319175	NM_053075	ENSMUSG00000028945	Rheb	Rheb1	Ras homolog enriched in brain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71273234-4	chr8	71273151	71273351	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163042)	promoter-TSS (NM_001163042)	537.0	NM_001142323	17925.0	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	2.87369570271951	2.6666585897884	2.65651569005937	1.40337518940562	1.34459292283428	1.73506152792707	2.16053482530093	1.15273770909052	-2.08159105460146	0.0422880927619178	0.294413464385391
Merged-chr7-27179020-4	chr7	27178892	27179092	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029391)	promoter-TSS (NM_029391)	-109.0	NM_029391	19342.0	Mm.482114	NM_029391	ENSMUSG00000053291	Rab4b	1500031G17Rik	RAB4B, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-136939609-3	chr6	136939501	136939701	+	843.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001301303)	promoter-TSS (NM_001301303)	-74.0	NM_001301303	11857.0	Mm.2241	NM_007486	ENSMUSG00000030220	Arhgdib	D4|Gdid4|Ly-GDI	Rho, GDP dissociation inhibitor (GDI) beta	protein-coding	3.51976343560435	3.18939132732287	2.0308280525951	3.06151143908435	2.99073158564427	1.66508885496729	1.30729325973912	1.26422085693878	-1.90739414513103	0.0461463083527377	0.310117666700605
Merged-chr9-63711640-2	chr9	63711540	63711740	+	558.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016769, intron 1 of 8)	intron (NM_016769, intron 1 of 8)	46354.0	NM_016769	17127.0	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166687438-2	chr2	166687338	166687538	+	757.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	26394.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-72038421-1	chr18	72038321	72038521	+	543.0	f1_c57bl6.idr	intron (NM_007831, intron 1 of 28)	intron (NM_007831, intron 1 of 28)	312648.0	NM_007831	13176.0	Mm.167882	NM_007831	ENSMUSG00000060534	Dcc	C030036D22Rik|Igdcc1	deleted in colorectal carcinoma	protein-coding	-0.909295505863045	-0.895817397635963	-0.903477811800931	-0.377229608855546	-0.908756792193705	-0.893159199153952	-0.902850713633907	-0.599585791608563	-0.896592185565226	0.77398904461321	1
Merged-chr12-73287804-4	chr12	73287705	73287905	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037717, intron 1 of 15)	intron (NM_001037717, intron 1 of 15)	957.0	NM_001037717	625098.0	Mm.32075	NM_001037717	ENSMUSG00000044712	Slc38a6	AW322671|EG625098	solute carrier family 38, member 6	protein-coding	2.66684700973406	3.39438348684706	2.33457222320604	3.01829572283985	2.45471686172511	2.90153374474227	3.8299276711624	3.42759715505396	0.59384775312721	0.383208443526397	0.874094088484736
Merged-chr8-95008173-2	chr8	95008073	95008273	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_018882, intron 9 of 13)	intron (NM_018882, intron 9 of 13)	-9519.0	NM_173036	54672.0	Mm.27995	NM_173036	ENSMUSG00000060470	Adgrg3	A030001G24Rik|AW214383|Gpr97|Pb1|Pb99	adhesion G protein-coupled receptor G3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-98468392-2	chr4	98468292	98468492	+	653.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001005784, intron 16 of 19)	intron (NM_001005784, intron 16 of 19)	57365.0	NM_001355177	12695.0	Mm.90218	NM_007704	ENSMUSG00000061859	Patj	Cipp|Inadl	PATJ, crumbs cell polarity complex component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-108068131-4	chr4	108068025	108068225	+	956.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011327, intron 12 of 15)	intron (NM_011327, intron 12 of 15)	-19232.0	NR_105823	102465213.0		NR_105823	ENSMUSG00000098980	Mir6397	Gm28004|mmu-mir-6397	microRNA 6397	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165299918-3	chr2	165299795	165299995	+	892.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302754, intron 9 of 19)	intron (NM_001302754, intron 9 of 19)	-12057.0	NR_045544	228875.0	Mm.21184	NM_144893	ENSMUSG00000017664	Slc35c2	C85957|CGI-15|D2Wsu58e|Ovcov1	solute carrier family 35, member C2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-75702019-4	chr2	75701920	75702120	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132727, intron 1 of 1)	intron (NR_132727, intron 1 of 1)	2643.0	NR_132727	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122267347-2	chr5	122267247	122267447	+	598.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2887.0	NM_001039153	654470.0	Mm.28804	NM_001039153	ENSMUSG00000038593	Tctn1	G730031O11Rik|Tect1	tectonic family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-90246492-2	chr9	90246392	90246592	+	920.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 2 of 12)	intron (NM_194334, intron 2 of 12)	24277.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-163899809-4	chr1	163899700	163899900	+	926.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305643, intron 19 of 19)	intron (NM_001305643, intron 19 of 19)	-29300.0	NM_001286002	240880.0	Mm.389213	NM_028776	ENSMUSG00000026584	Scyl3	1200016D23Rik|6030457O16|AW214499|Pace1	SCY1-like 3 (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-43929942-1	chr19	43929842	43930042	+	560.0	f1_c57bl6.idr	intron (NM_028029, intron 1 of 15)	intron (NM_028029, intron 1 of 15)	10256.0	NM_028029	71972.0	Mm.159024	NM_028029	ENSMUSG00000025195	Dnmbp	2410003L07Rik|2410003M15Rik|TUBA	dynamin binding protein	protein-coding	1.36244839491396	1.54674124793424	0.893505667402431	2.22272356143724	0.85452633118487	1.84248978963491	0.897965330812035	1.91601372477031	-0.36422554741384	0.786597287575992	0.998431161219273
Merged-chr19-55927634-2	chr19	55927534	55927734	+	828.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001331137, intron 14 of 14)	intron (NM_001331137, intron 14 of 14)	32313.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-88407020-4	chr4	88406933	88407133	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081184, intron 41 of 43)	intron (NM_001081184, intron 41 of 43)	31893.0	NM_025760	66775.0	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-85987427-4	chr1	85987324	85987524	+	968.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-26369.0	NM_001033290	227326.0	Mm.244158	NM_001033290	ENSMUSG00000049608	Gpr55	CTFL|Gm218|Lpir1	G protein-coupled receptor 55	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-110868518-1	chr11	110868418	110868618	+	613.0	f0_balb.idr	Intergenic	Intergenic	-99515.0	NM_010604	16517.0	Mm.30176	NM_010604	ENSMUSG00000051497	Kcnj16	6430410F18Rik|AI132396|Kir5.1	potassium inwardly-rectifying channel, subfamily J, member 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-59832973-2	chr4	59832859	59833059	+	597.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_172468, intron 1 of 8)	intron (NM_172468, intron 1 of 8)	27309.0	NM_172468	209131.0	Mm.259705	NM_172468	ENSMUSG00000028385	Snx30	4732481H14Rik|C030041J06Rik	sorting nexin family member 30	protein-coding	0.685823978698686	1.07697749810175	0.286535210681503	1.14845159291752	0.434877451354477	0.296754015814124	0.288383003137807	0.281178777120561	-3.6072760949955	0.055780021001773	1
Merged-chr7-123379237-2	chr7	123379137	123379337	+	890.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025304, intron 1 of 10)	MIR|SINE|MIR	1255.0	NM_025304	30949.0	Mm.260527	NM_025304	ENSMUSG00000030763	Lcmt1	AL033290|LCMT-1|Lcmt	leucine carboxyl methyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-112440097-4	chr13	112440024	112440224	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23946.0	NM_010560	16195.0	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-86468678-2	chr9	86468586	86468786	+	568.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_177208, intron 1 of 38)	intron (NM_177208, intron 1 of 38)	1532.0	NM_177208	320615.0	Mm.245500	NM_177208	ENSMUSG00000034973	Dopey1	B130005I07Rik|BC035275|C130028L17|D9Ertd809e	dopey family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-23699902-4	chr11	23699799	23699999	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033654, intron 4 of 17)	intron (NM_001033654, intron 4 of 17)	33923.0	NM_028304	74467.0	Mm.29536	NM_028304	ENSMUSG00000020280	Pus10	2810013G11Rik|4933435A13Rik|AU014648|C77560|Ccdc139	pseudouridylate synthase 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-73293863-4	chr8	73293757	73293957	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010687, intron 1 of 14)	MTD|LTR|ERVL-MaLR	59683.0	NM_001317391	16795.0	Mm.324371	NM_010687	ENSMUSG00000004383	Large1	BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd	LARGE xylosyl- and glucuronyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-98042513-4	chr3	98042406	98042606	+	751.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010928, intron 1 of 33)	intron (NM_010928, intron 1 of 33)	28968.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-136172541-2	chr5	136172441	136172641	+	876.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1885.0	NM_178751	269717.0	Mm.308396	NM_178751	ENSMUSG00000039747	Orai2	A730041O15Rik|Tmem142b	ORAI calcium release-activated calcium modulator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-49074947-3	chr10	49074823	49075023	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RodERV21-int|LTR|ERV1	713014.0	NM_001358866	14806.0	Mm.185993	NM_010349	ENSMUSG00000056073	Grik2	AW124492|C130030K03Rik|GluK2|Glur-6|Glur6|Glurbeta2	glutamate receptor, ionotropic, kainate 2 (beta 2)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-79253503-4	chr2	79253406	79253606	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-1920.0	NM_010576	16401.0	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-148928810-4	chr5	148928720	148928920	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153572)	promoter-TSS (NM_153572)	-173.0	NM_153572	231912.0	Mm.397405	NM_153572	ENSMUSG00000041298	Katnal1	-	katanin p60 subunit A-like 1	protein-coding	5.54748768286781	3.97478743211608	5.94071445436636	5.1273389035464	5.78848472420346	4.54551061729814	5.997121838952	5.15069225464598	0.185002266261807	0.647436725298176	0.984946639492078
Merged-chr5-137782939-2	chr5	137782839	137783039	+	861.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144913, intron 2 of 3)	B1_Mus1|SINE|Alu	3762.0	NM_144913	231803.0	Mm.61193	NM_144913	ENSMUSG00000029726	Mepce	Bcdin3|D5Wsu46e	methylphosphate capping enzyme	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-31612670-2	chr15	31612570	31612770	+	610.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356313, intron 5 of 5)	B2_Mm2|SINE|B2	10554.0	NM_001356313	68073.0	Mm.119185	NM_026546	ENSMUSG00000039065	Fam173b	A930016P21Rik|AA987072	family with sequence similarity 173, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-34453197-3	chr15	34453105	34453305	+	798.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173421)	promoter-TSS (NM_173421)	-107.0	NM_173421	239368.0	Mm.211977	NM_173421	ENSMUSG00000044726	Erich5	-	glutamate rich 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72389697-4	chr6	72389605	72389805	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016794, intron 1 of 2)	intron (NM_016794, intron 1 of 2)	962.0	NM_016794	22320.0	Mm.1838	NM_016794	ENSMUSG00000050732	Vamp8	AU041171|Edb|endobrevin	vesicle-associated membrane protein 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-122161702-3	chr2	122161579	122161779	+	704.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080510, intron 1 of 6)	intron (NM_080510, intron 1 of 6)	979.0	NM_080510	70928.0	Mm.379188	NM_080510	ENSMUSG00000033368	Trim69	4921519C19Rik|Rnf36|Trif|Trimless	tripartite motif-containing 69	protein-coding	0.485502606442409	0.25289641959816	0.675675628920922	0.242982283527551	0.690129894898019	0.593495183646127	0.560848854388011	0.24373437975807	0.724130228834354	0.694928128629206	1
Merged-chr1-60899362-3	chr1	60899229	60899429	+	975.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9696.0	NM_009843	12477.0	Mm.390	NM_009843	ENSMUSG00000026011	Ctla4	Cd152|Ctla-4|Ly-56	cytotoxic T-lymphocyte-associated protein 4	protein-coding	0.74965719918874	1.1506179920179	0.540959143423634	1.30376801051267	0.320297727951098	0.349405488619125	0.34005639311765	0.331987206877391	-4.50982632410857	0.0118852686680153	1
Merged-chr13-60670793-4	chr13	60670706	60670906	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	68595.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-115903051-3	chr4	115902954	115903154	+	715.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12388.0	NM_001357060	76237.0	Mm.101606	NM_001357060	ENSMUSG00000034185	6430628N08Rik	-	RIKEN cDNA 6430628N08 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-57339754-4	chr17	57339638	57339838	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18948.0	NM_001355723	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	3.4106313241177	3.9926151435828	2.59661818447661	3.02191940079213	3.61335899091761	3.53276523436502	2.61820289011682	3.31425400577359	-0.0490645689561265	0.937134641014435	0.998431161219273
Merged-chr7-137420690-4	chr7	137420543	137420743	+	943.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-9887.0	NM_029886	77252.0	Mm.29184	NM_029886	ENSMUSG00000040139	9430038I01Rik	-	RIKEN cDNA 9430038I01 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-93819631-1	chr11	93819531	93819731	+	875.0	f1_c57bl6.idr	Intergenic	Lx2B2|LINE|L1	66135.0	NM_001013375	217109.0	Mm.379350	NM_001013375	ENSMUSG00000054079	Utp18	6230425C22Rik|6430513M13|Wdr50	UTP18 small subunit processome component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45151465-2	chr7	45151362	45151562	+	714.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_145954, intron 1 of 16)	L1MC5|LINE|L1	-2841.0	NM_029406	68845.0	Mm.181689	NM_029406	ENSMUSG00000003423	Pih1d1	1110061L23Rik|4933413A04Rik|Nop17	PIH1 domain containing 1	protein-coding	1.15101698204684	1.01630709803486	0.993365595354384	2.1197693705818	2.1722148960126	2.19443633392198	2.00878386195618	1.21094278425169	1.50122516857945	0.217211685846959	0.707668122771131
Merged-chr5-112877256-2	chr5	112877156	112877356	+	721.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_028901, intron 3 of 43)	intron (NM_028901, intron 3 of 43)	19106.0	NM_028901	74376.0	Mm.441903	NM_028901	ENSMUSG00000072720	Myo18b	4932408L24Rik|4933411E19Rik|Gm448	myosin XVIIIb	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-69307216-6	chr10	69307082	69307282	+	882.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45730.0	NM_007659	12534.0	Mm.281367	NM_007659	ENSMUSG00000019942	Cdk1	Cdc2|Cdc2a|p34<CDC2>	cyclin-dependent kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-151531099-2	chr2	151530999	151531199	+	543.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11384.0	NR_126058	14225.0	Mm.278458	NM_008019	ENSMUSG00000032966	Fkbp1a	FKBP12|Fkbp|Fkbp1	FK506 binding protein 1a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-24595107-2	chr5	24595007	24595207	+	598.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025891, intron 7 of 12)	intron (NM_025891, intron 7 of 12)	2993.0	NR_030423	735264.0		NR_030423	ENSMUSG00000076387	Mir671	Mirn671|mmu-mir-671	microRNA 671	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-84952095-4	chr18	84952000	84952200	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025969)	promoter-TSS (NM_025969)	-576.0	NM_025969	67105.0	Mm.250617	NM_025969	ENSMUSG00000024645	Timm21	1700034H14Rik|2700002I20Rik	translocase of inner mitochondrial membrane 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-143149156-2	chr6	143149056	143149256	+	713.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_153819, exon 3 of 9)	non-coding (NR_153819, exon 3 of 9)	4775.0	NR_153819	102633311.0	Mm.333484	NR_153819		Gm31108	Gm31169	predicted gene, 31108	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71250881-4	chr17	71250782	71250982	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46228.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35279463-3	chr17	35279373	35279573	+	961.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Charlie4z|DNA|hAT-Charlie	16350.0	NM_001267808	14980.0	Mm.439675	NM_001267808		H2-L	H-2L	histocompatibility 2, D region locus L	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-25455659-2	chr5	25455559	25455759	+	568.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081383, intron 1 of 58)	RSINE1|SINE|B4	43124.0	NM_001081383	231051.0	Mm.332268	NM_001081383	ENSMUSG00000038056	Kmt2c	E330008K23Rik|HALR|Mll3|mKIAA1506	lysine (K)-specific methyltransferase 2C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-35885356-4	chr12	35885240	35885440	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40281.0	NM_207531	403205.0	Mm.190508	NM_207531	ENSMUSG00000036231	Agr3	BCMP11|E030025L21Rik|Gm888	anterior gradient 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-147522306-2	chr4	147522206	147522406	+	623.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30971.0	NM_001014397	433804.0	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154	zinc finger protein 985	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-166003437-4	chr1	166003338	166003538	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011137)	promoter-TSS (NM_011137)	-804.0	NM_198932	18986.0	Mm.245261	NM_011137	ENSMUSG00000026565	Pou2f1	2810482H01Rik|NF-A1|Oct-1|Oct1|Otf-1|Otf1	POU domain, class 2, transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-143489395-2	chr5	143489295	143489495	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144915, intron 8 of 14)	intron (NM_144915, intron 8 of 14)	24902.0	NM_144915	231871.0	Mm.469963	NM_144915	ENSMUSG00000039206	Daglb	E330036I19Rik	diacylglycerol lipase, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-59188748-3	chr4	59188637	59188837	+	799.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011673)	promoter-TSS (NM_011673)	-813.0	NM_011673	22234.0	Mm.198803	NM_011673	ENSMUSG00000028381	Ugcg	AU043821|C80537|Epcs21|GlcT-1|Ugcgl	UDP-glucose ceramide glucosyltransferase	protein-coding	-0.251247277642046	-0.0754769201377866	0.146592334142883	-0.247249528841971	-0.250656594329335	-0.0713715353846618	0.154628070553844	-0.246825149999246	0.0404455685334583	0.986179237062229	1
Merged-chr14-47276958-4	chr14	47276868	47277068	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172598)	promoter-TSS (NM_172598)	-111.0	NM_172598	218973.0	Mm.265615	NM_172598	ENSMUSG00000037572	Wdhd1	A630092E18|AND-1|D630024B06Rik	WD repeat and HMG-box DNA binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-6705761-4	chr15	6705661	6705861	+	990.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2620.0	NM_030168	78757.0	Mm.275811	NM_030168	ENSMUSG00000050310	Rictor	4921505C17Rik|6030405M08Rik|AVO3|AW492497|D530039E11Rik	RPTOR independent companion of MTOR, complex 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-144312458-3	chr5	144312374	144312574	+	646.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025833, intron 3 of 13)	Tigger6a|DNA|TcMar-Tigger	35413.0	NR_040432	100504231.0	Mm.441035	NR_040432	ENSMUSG00000086894	Gm15708	-	predicted gene 15708	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-87809804-4	chr6	87809740	87809940	+	963.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133717)	promoter-TSS (NM_133717)	-83.0	NM_133717	69834.0	Mm.37380	NM_133717	ENSMUSG00000030055	Rab43	1810048P08Rik|2500004H21Rik|AW490415	RAB43, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-31499785-7	chr12	31499643	31499843	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134048)	promoter-TSS (NM_134048)	-127.0	NM_001253848	104836.0	Mm.273270	NM_134048	ENSMUSG00000020659	Cbll1	AI467391|Hakai|c-Cbl-like	Casitas B-lineage lymphoma-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-84847684-4	chr12	84847602	84847802	+	996.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013589, intron 3 of 34)	intron (NM_013589, intron 3 of 34)	-28100.0	NR_028577	100303738.0	Mm.479389	NR_028577	ENSMUSG00000092130	D030025P21Rik	-	RIKEN cDNA D030025P21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-66933056-7	chr13	66932933	66933133	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025547)	promoter-TSS (NM_025547)	39.0	NM_025547	66410.0	Mm.347939	NM_025547	ENSMUSG00000021519	Mterf3	2410017I18Rik|Mterfd1	mitochondrial transcription termination factor 3	protein-coding	2.89952734086545	3.33566986475668	2.7327356086956	1.82541658394575	2.64607107333716	3.51453704492291	3.07651763810361	3.07079389991654	0.53983677335796	0.445751260427072	0.913297769068133
Merged-chr11-109363526-4	chr11	109363464	109363664	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_038097)	promoter-TSS (NR_038097)	90.0	NR_038097	100036768.0	Mm.467767	NR_038097	ENSMUSG00000056687	Gm11696	-	predicted gene 11696	ncRNA	4.11215373327774	4.30854538832876	4.75251032966926	3.41903321318422	3.51039162671723	4.01214909777036	3.72692547891278	3.69045477912483	-0.673464060715329	0.160716657518782	0.620823714394832
Merged-chr18-75899837-1	chr18	75899737	75899937	+	641.0	f1_balb.idr	intron (NM_145356, intron 1 of 4)	intron (NM_145356, intron 1 of 4)	79659.0	NM_145356	207259.0	Mm.159332	NM_145356	ENSMUSG00000044646	Zbtb7c	B230208J24Rik|Kr-pok|Zbtb36	zinc finger and BTB domain containing 7C	protein-coding	1.52933991029025	0.792031297275925	1.94954068481487	1.52691834628506	1.09016666865562	1.39406929848339	0.780190257856766	0.766921006789345	-1.8783385756456	0.185180048367822	0.660853724068152
Merged-chr14-63138410-2	chr14	63138310	63138510	+	633.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_007798, exon 7 of 10)	exon (NM_007798, exon 7 of 10)	15948.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-70963760-4	chr17	70963681	70963881	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	26735.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-51523048-2	chr10	51522948	51523148	+	576.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32150.0	NM_013532	14728.0	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-20307789-3	chr14	20307684	20307884	+	954.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001359868, exon 6 of 10)	exon (NM_001359868, exon 6 of 10)	13094.0	NR_153364	67725.0	Mm.317636	NM_026341	ENSMUSG00000021809	Nudt13	4933433B15Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-122490907-2	chr14	122490854	122491054	+	799.583374	f1_balb.idr|f1_c57bl6.idr	intron (NR_153443, intron 1 of 24)	CpG	6589.0	NR_153443	110821.0	Mm.23876	NM_144844	ENSMUSG00000041650	Pcca	C79630	propionyl-Coenzyme A carboxylase, alpha polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-35553373-4	chr18	35553270	35553470	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_038073)	promoter-TSS (NR_038073)	-40.0	NR_038073	100503380.0	Mm.482118	NR_038073	ENSMUSG00000097769	Snhg4	Gm17457	small nucleolar RNA host gene 4	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-63276689-1	chr13	63276589	63276789	+	544.0	f1_balb.idr	intron (NM_001289926, intron 13 of 15)	ID_B1|SINE|B4	20458.0	NR_045794	100504114.0	Mm.437070	NR_045794	ENSMUSG00000097242	Gm16907	-	predicted gene, 16907	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122843991-3	chr5	122843891	122844091	+	741.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR30B_MM|LTR|ERV1	-6197.0	NM_030564	80751.0	Mm.388529	NM_030564	ENSMUSG00000029474	Rnf34	AW061037|AW536122|BC004042|C88279|RIFF	ring finger protein 34	protein-coding	3.31723745787375	3.89019493776336	4.18984632182505	4.02723224011056	3.49611109644415	4.24406387544776	4.1672076590976	1.72065296115174	-0.266567092096527	0.672386627482553	0.99440487726309
Merged-chr19-41343319-2	chr19	41343219	41343419	+	776.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 2 of 16)	intron (NM_031376, intron 2 of 16)	41751.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134274169-3	chr6	134274035	134274235	+	826.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-122194.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-91398236-2	chr1	91398136	91398336	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023343, intron 1 of 11)	CpG	587.0	NM_023343	67444.0	Mm.337240	NM_023343	ENSMUSG00000026309	Ilkap	0710007A14Rik|1600009O09Rik|PP2C-DELTA	integrin-linked kinase-associated serine/threonine phosphatase 2C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-125164978-2	chr5	125164878	125165078	+	584.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253905, intron 1 of 42)	intron (NM_001253905, intron 1 of 42)	14236.0	NM_001253905	20602.0	Mm.278646	NM_011424	ENSMUSG00000029478	Ncor2	N-CoR|SMRT|SMRTe	nuclear receptor co-repressor 2	protein-coding	-1.06997269762433	-1.30473905204845	-1.3145270772132	-1.32256725251374	-1.06385251204029	-1.30261794616352	-1.3123112828633	-1.32112806497905	0.0394047164033882	0.991001358494878	1
Merged-chr7-90280664-2	chr7	90280563	90280763	+	859.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15231.0	NR_111924	75338.0	Mm.487222	NM_029256	ENSMUSG00000030617	Ccdc83	4930549K11Rik|4930554C01Rik|4932423M01Rik	coiled-coil domain containing 83	protein-coding	1.4190720100113	1.20055699225456	1.48358114514308	0.637462370153099	0.791532871958919	0.659554760784335	0.648496578498436	1.2390310320115	-1.68550505881864	0.277521945031764	0.781378569827891
Merged-chr16-8636817-2	chr16	8636717	8636917	+	946.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016881)	promoter-TSS (NM_016881)	884.0	NM_025708	66690.0	Mm.10068	NM_025708	ENSMUSG00000043140	Tmem186	2810440M13Rik|4432406C05Rik|AI648175|AW210586	transmembrane protein 186	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96104422-4	chr3	96104292	96104492	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001025614)	promoter-TSS (NM_001025614)	-135.0	NM_001025613	229603.0	Mm.272336	NM_001025613	ENSMUSG00000038495	Otud7b	2900060B22Rik|4930463P07Rik|AI462125|CEZANNE|Trabid2|Za20d1	OTU domain containing 7B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-77281959-3	chr1	77281892	77282092	+	780.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	214776.0	NR_105770	102465180.0		NR_105770	ENSMUSG00000099141	Mir6352	Gm27481|mmu-mir-6352	microRNA 6352	ncRNA	2.08916241197865	1.00377453626999	0.983836914231379	1.51725970611358	1.95951119897316	1.00819103472416	2.05115014606133	1.77817738463434	0.780212858142874	0.543809329182039	0.955585568541497
Merged-chr7-128220194-2	chr7	128220140	128220340	+	720.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-13874.0	NM_009943	12862.0	Mm.43824	NM_009943	ENSMUSG00000030785	Cox6a2	CoxVIaH|VIaH	cytochrome c oxidase subunit VIa polypeptide 2	protein-coding	-2.18308165884198	-2.15547475440471	-2.16382331017202	-2.1706810624505	-2.18114370519566	-2.15366558754311	-2.03057248461154	-2.16945352807143	0.759018020146679	0.829933115115583	1
Merged-chr10-77912611-2	chr10	77912511	77912711	+	545.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_138301, exon 32 of 34)	exon (NM_138301, exon 32 of 34)	-10075.0	NM_145152	237387.0	Mm.133301	NM_145152	ENSMUSG00000051652	Lrrc3	1300011L04Rik|C21orf102	leucine rich repeat containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-43368742-3	chr8	43368606	43368806	+	896.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61697.0	NM_009556	22702.0	Mm.285848	NM_009556	ENSMUSG00000051176	Zfp42	Rex-1|Rex1|Zfp-42	zinc finger protein 42	protein-coding	3.06403240298783	3.43621206804817	3.67812405331238	3.74889720112643	2.60681219243753	3.17455887787283	1.95106876147442	3.07035619148745	-1.21851195970408	0.0579244857732638	0.356207967075077
Merged-chr7-4139555-2	chr7	4139455	4139655	+	831.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_172736, exon 3 of 15)	exon (NM_172736, exon 3 of 15)	2499.0	NM_172736	232798.0	Mm.22831	NM_172736	ENSMUSG00000035545	Leng8	AW049671	leukocyte receptor cluster (LRC) member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-108988041-2	chr9	108987941	108988141	+	591.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_145077)	TTS (NM_145077)	1878.0	NM_145077	171530.0	Mm.388865	NM_145077	ENSMUSG00000049699	Ucn2	Ucn II|Ucn-2|ucn-II	urocortin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-9628681-2	chr15	9628581	9628781	+	700.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001305042, intron 25 of 36)	intron (NM_001305042, intron 25 of 36)	-98805.0	NM_008372	16197.0	Mm.389	NM_008372	ENSMUSG00000003882	Il7r	CD127|IL-7Ralpha	interleukin 7 receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-109561339-2	chr5	109561303	109561503	+	578.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1VL1|LINE|L1	-2410.0	NM_001310694	57914.0	Mm.35771	NM_016715	ENSMUSG00000033467	Crlf2	CRLM2|Ly114|Tpte2|Tslpr	cytokine receptor-like factor 2	protein-coding	1.15445300899267	0.61430463736449	0.78368338963977	0.764825786052265	0.865116039895925	0.813319396923103	1.18839802060182	1.14312759597373	0.839873482825244	0.564030078459209	1
Merged-chr4-148065281-2	chr4	148065181	148065381	+	949.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22783.0	NM_009642	11610.0	Mm.46247	NM_009642	ENSMUSG00000029007	Agtrap	3300002E14Rik|AT1R|Atrap|D4Wsu124e	angiotensin II, type I receptor-associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75191909-2	chr11	75191809	75192009	+	826.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1426.0	NM_144491	116905.0	Mm.41496	NM_144491	ENSMUSG00000078789	Dph1	2310011M22Rik|4930488F09Rik|AW551873|Dph2l1|Ovca1	diphthamide biosynthesis 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-114787928-4	chr9	114787819	114788019	+	999.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5926.0	NM_001252479	102545.0	Mm.35600	NM_133978	ENSMUSG00000032436	Cmtm7	AI481279|Cklfsf7|LNV	CKLF-like MARVEL transmembrane domain containing 7	protein-coding	3.08291820772824	3.67949551573028	3.3453762085243	3.17164644328952	1.44706227432909	3.70559778495068	2.89565140854346	2.23204097775114	-0.844793886067981	0.265435826220477	0.768014238663975
Merged-chr2-5064056-4	chr2	5063974	5064174	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181848)	promoter-TSS (NM_181848)	43.0	NM_181848	71648.0	Mm.116942	NM_181848	ENSMUSG00000026672	Optn	4930441O07Rik|FIP2|HYPL|NRP	optineurin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28432556-4	chr7	28432442	28432642	+	878.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175021, intron 1 of 12)	intron (NM_175021, intron 1 of 12)	3649.0	NM_175021	233033.0	Mm.54120	NM_175021	ENSMUSG00000109336	Samd4b	BC042901	sterile alpha motif domain containing 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-131507435-2	chr2	131507335	131507535	+	657.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177840, intron 1 of 3)	intron (NM_001177840, intron 1 of 3)	15573.0	NM_001177838	228608.0	Mm.136586	NM_145533	ENSMUSG00000027333	Smox	B130066H01Rik|PAO|PAOh1|SMO	spermine oxidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-62231578-4	chr18	62231474	62231674	+	923.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51474.0	NM_001013754	225609.0	Mm.296917	NM_001013754	ENSMUSG00000054589	Gm9949	EG225609	predicted gene 9949	protein-coding	3.1508783567743	3.22825975528766	3.68699407005825	4.43215439161399	2.46841009075845	3.76072216825192	3.79083976811755	4.56269568968535	0.149632077605734	0.804776321609441	0.998431161219273
Merged-chr11-98797656-1	chr11	98797556	98797756	+	542.0	f1_balb.idr	promoter-TSS (NM_001361934)	promoter-TSS (NM_001361934)	-998.0	NM_001361933	74026.0	Mm.258352	NM_028722	ENSMUSG00000052915	Msl1	2810017F12Rik|4121402D02Rik|4930463F05Rik|AA682082|Msl-1	male specific lethal 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28077842-2	chr17	28077743	28077943	+	616.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357681, intron 3 of 9)	B4|SINE|B4	2741.0	NM_001357681	21463.0	Mm.29758	NM_013687	ENSMUSG00000062859	Tcp11	D17Ken1|Tcp-11	t-complex protein 11	protein-coding	-0.0468026203178347	-0.0324790375588786	-0.0371880360015527	0.363170874474393	0.316876314567564	-0.0314153238911788	0.514733105181685	0.117478383500251	1.43162799853807	0.509283112547881	1
Merged-chr11-75630250-2	chr11	75630150	75630350	+	934.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008916)	promoter-TSS (NM_008916)	-770.0	NM_008916	19062.0	Mm.1458	NM_008916	ENSMUSG00000006127	Inpp5k	C62|Pps|SKIP	inositol polyphosphate 5-phosphatase K	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-122122316-4	chr9	122122203	122122403	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357776, intron 1 of 5)	intron (NM_001357776, intron 1 of 5)	4844.0	NM_001357776	20623.0	Mm.257989	NM_133741	ENSMUSG00000038145	Snrk	2010012F07Rik|AI448042|AW547029|E030034B15|R74830|mKIAA0096	SNF related kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-89336467-1	chr6	89336367	89336567	+	799.0	f0_c57.idr	intron (NM_008881, intron 10 of 31)	intron (NM_008881, intron 10 of 31)	26146.0	NM_008881	18844.0	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28311128-2	chr7	28311028	28311228	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025616, intron 1 of 10)	intron (NM_025616, intron 1 of 10)	918.0	NM_025616	66525.0	Mm.167913	NM_025616	ENSMUSG00000003438	Timm50	2810403L02Rik|AU015082|TIM50L	translocase of inner mitochondrial membrane 50	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-32736874-4	chr3	32736807	32737007	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029017)	promoter-TSS (NM_029017)	-152.0	NM_029017	74600.0	Mm.288960	NM_029017	ENSMUSG00000037531	Mrpl47	4833424P18Rik|CGI-204|Gm9859|L47mt|MRP-L47|MTF/L47|NCM1	mitochondrial ribosomal protein L47	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-134561552-2	chr1	134561452	134561652	+	950.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_152895, intron 1 of 26)	CpG	1374.0	NM_152895	75605.0	Mm.28995	NM_152895	ENSMUSG00000042207	Kdm5b	2010009J12Rik|2210016I17Rik|AW556288|D1Ertd202e|Jarid1b|PLU-1|PUT1|Plu1|RBBP2H1A|Rb-Bp2|mKIAA4034	lysine (K)-specific demethylase 5B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-50799995-3	chr14	50799897	50800097	+	823.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4269.0	NM_001111119	239083.0	Mm.343880	NM_001111119	ENSMUSG00000071470	Ccnb1ip1	Gm288|Hei10|mei4	cyclin B1 interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-27587893-2	chr7	27587782	27587982	+	664.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	AT_rich|Low_complexity|Low_complexity	-3670.0	NM_001110208	11652.0	Mm.177194	NM_007434	ENSMUSG00000004056	Akt2	2410016A19Rik|AW554154|PKB|PKBbeta	thymoma viral proto-oncogene 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-160627362-4	chr2	160627359	160627559	+	976.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18438.0	NM_009408	21969.0	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-34176462-3	chr7	34176363	34176563	+	867.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	-7934.0	NM_016682	50995.0	Mm.27560	NM_016682	ENSMUSG00000052997	Uba2	AA986091|Arx|Sae2|UBA1|Ubl1a2|Uble1b	ubiquitin-like modifier activating enzyme 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-128726942-2	chr4	128726842	128727042	+	810.833374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001195083)	promoter-TSS (NM_001195083)	-629.0	NM_001195083	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-65737836-4	chr17	65737721	65737921	+	928.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133685, intron 1 of 6)	intron (NM_133685, intron 1 of 6)	34931.0	NM_133685	106572.0	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-89210552-4	chr9	89210475	89210675	+	706.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026829)	promoter-TSS (NM_026829)	-615.0	NM_026829	107885.0	Mm.486274	NM_026829	ENSMUSG00000066442	Mthfs	1110034I12Rik|2310020H23Rik|AI119695	5, 10-methenyltetrahydrofolate synthetase	protein-coding	2.52915742931444	2.94204837108385	2.91471765358767	2.67476910077851	1.14747200428436	1.27292059142931	1.23455999157525	2.40746803408963	-2.63689900384995	0.00953984484676096	0.105589537335275
Merged-chr11-51858391-1	chr11	51858291	51858491	+	1000.0	f0_balb.idr	promoter-TSS (NM_199299)	promoter-TSS (NM_199299)	-761.0	NM_001357588	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-17775318-4	chr10	17775231	17775431	+	949.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20888.0	NM_138628	378431.0	Mm.283493	NM_138628	ENSMUSG00000039891	Txlnb	2310001N14Rik|Mdp77	taxilin beta	protein-coding	1.86840603402207	2.63362032760656	1.87762749911693	2.29688370123313	2.10261860363746	1.95402219662174	1.28413276960549	2.20888786494739	-0.690591675523476	0.474261085559425	0.926577946129404
Merged-chr4-63948305-3	chr4	63948239	63948439	+	811.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-87055.0	NM_009403	21949.0	Mm.4664	NM_009403	ENSMUSG00000028362	Tnfsf8	CD153|CD30LG|Cd30l|Tnlg3a	tumor necrosis factor (ligand) superfamily, member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-8997975-2	chr4	8997875	8998075	+	541.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	246651.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-149192458-1	chr6	149192358	149192558	+	786.0	f1_balb.idr	Intergenic	LTRIS2|LTR|ERV1	-3746.0	NM_001113424	232566.0	Mm.209147	NM_001113424	ENSMUSG00000068250	Amn1	5830467E07Rik|A230083D09|C730024G19Rik	antagonist of mitotic exit network 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46740835-3	chr19	46740746	46740946	+	694.200012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_020577, exon 11 of 11)	3' UTR (NM_020577, exon 11 of 11)	-20763.0	NM_033569	94219.0	Mm.306903	NM_033569	ENSMUSG00000064105	Cnnm2	AU015877|AW048635|Acdp2|Clp2	cyclin M2	protein-coding	0.568580073665856	0.312845433788827	0.489533066680227	0.299804954074301	0.291724891587287	0.831153281155738	1.10557772302596	0.620691619618205	2.13291321254198	0.239114074017853	1
Merged-chr3-10025973-4	chr3	10025875	10026075	+	962.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13390.0	NM_001272098	16592.0	Mm.741	NM_010634	ENSMUSG00000027533	Fabp5	E-FABP|Fabpe|Klbp|PA-FABP|mal1	fatty acid binding protein 5, epidermal	protein-coding	5.3613544646949	5.04547777561215	4.97256978623301	5.18607197976122	4.96140905283797	4.85231733562863	4.43269291811506	5.32373643697769	-0.261338592007222	0.422082321461774	0.900322118218157
Merged-chr10-83565623-3	chr10	83565526	83565726	+	781.305542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033375, intron 14 of 32)	intron (NM_001033375, intron 14 of 32)	21685.0	NM_001033375	319277.0	Mm.491194	NM_001033375	ENSMUSG00000034560	Washc4	A230046K03Rik|AA589518|Kiaa1033|mKIAA1033	WASH complex subunit 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-77265256-4	chr5	77265159	77265359	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011263)	promoter-TSS (NM_011263)	-235.0	NM_011263	19712.0	Mm.28840	NM_011263	ENSMUSG00000029249	Rest	2610008J04Rik|AA407358|NRSF|REST4	RE1-silencing transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-150926652-2	chr2	150926552	150926752	+	797.333313	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001163476)	TTS (NM_001163476)	17058.0	NM_001163476	69270.0	Mm.271603	NM_027014	ENSMUSG00000027454	Gins1	2810418N01Rik|Gins4|PSF1|mKIAA0186	GINS complex subunit 1 (Psf1 homolog)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-102208957-2	chr7	102208857	102209057	+	932.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001287166, intron 1 of 19)	B1_Mur2|SINE|Alu	910.0	NM_001287167	269966.0	Mm.439800	NM_022979	ENSMUSG00000063550	Nup98	4732457F17|AI849286|Nup96	nucleoporin 98	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-87377460-2	chr17	87377360	87377560	+	744.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028639, intron 19 of 19)	intron (NM_028639, intron 19 of 19)	50281.0	NM_029298	75467.0	Mm.50108	NM_029298	ENSMUSG00000036557	Stpg4	1700011E24Rik|GSE	sperm tail PG rich repeat containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-95693852-2	chr16	95693752	95693952	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8555.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118822166-2	chr9	118822066	118822266	+	908.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 4 of 13)	intron (NM_001113514, intron 4 of 13)	-104370.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	0.318677934111785	-0.316121796939667	-0.320621291183538	-0.32409402702331	0.331322051847464	-0.315107779543456	-0.319628743977455	-0.32348726480789	0.0419906371069014	0.98733725566035	1
Merged-chr1-92648950-4	chr1	92648848	92649048	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153114)	promoter-TSS (NM_153114)	-107.0	NM_153114	260301.0	Mm.219545	NM_153114	ENSMUSG00000044055	Otos	OTOSP	otospiralin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-13244512-4	chr15	13244425	13244625	+	874.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70850.0	NM_007666	12563.0	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97439602-2	chr6	97439502	97439702	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	19684.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83534393-2	chr11	83534293	83534493	+	975.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-3875.0	NM_013653	20304.0	Mm.284248	NM_013653	ENSMUSG00000035042	Ccl5	MuRantes|RANTES|SISd|Scya5|TCP228	chemokine (C-C motif) ligand 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-142935197-3	chr2	142935105	142935305	+	637.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	32240.0	NR_131921	75053.0	Mm.72638	NR_131921	ENSMUSG00000086504	Kif16bos	4930511F01Rik	kinesin family member 16B, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-130987648-3	chr1	130987555	130987755	+	847.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-32190.0	NM_010548	16153.0	Mm.874	NM_010548	ENSMUSG00000016529	Il10	CSIF|Il-10	interleukin 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-108190414-3	chr10	108190418	108190618	+	751.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027892, intron 1 of 25)	intron (NM_027892, intron 1 of 25)	28118.0	NM_027892	17931.0	Mm.422959	NM_027892	ENSMUSG00000019907	Ppp1r12a	1200015F06Rik|5730577I22Rik|AA792106|AV099298|D10Ertd625e|Mypt1	protein phosphatase 1, regulatory (inhibitor) subunit 12A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124092336-2	chr5	124092236	124092436	+	786.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019875, intron 1 of 11)	intron (NM_019875, intron 1 of 11)	3462.0	NM_019875	56325.0	Mm.254839	NM_019875	ENSMUSG00000029408	Abcb9	TAPL|mKIAA1520	ATP-binding cassette, sub-family B (MDR/TAP), member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-52838899-4	chr6	52838808	52839008	+	997.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173406, intron 2 of 4)	intron (NM_173406, intron 2 of 4)	70712.0	NM_001168277	231986.0	Mm.386865	NM_173406	ENSMUSG00000063568	Jazf1	AI591476|C820002C15|Jaz1|Tip27	JAZF zinc finger 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-26999235-2	chr8	26999135	26999335	+	593.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21899.0	NM_001110508	353310.0	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-105393689-3	chr9	105393685	105393885	+	801.138916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172461, intron 1 of 15)	intron (NM_172461, intron 1 of 15)	1502.0	NM_172461	208583.0	Mm.347509	NM_172461	ENSMUSG00000035032	Nek11	4932416N14Rik	NIMA (never in mitosis gene a)-related expressed kinase 11	protein-coding	1.44649227917631	1.28135386818483	2.12038821748061	1.05808302099365	1.91603565327018	1.28801183730835	1.69860426619008	1.52450004664438	0.223913881788619	0.850945494875994	0.998431161219273
Merged-chr6-97482080-4	chr6	97481968	97482168	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	MIRb|SINE|MIR	5752.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	1.94286354581752	1.29011251877226	3.56324930731773	1.89800222668362	1.4153923279658	1.84625944030389	2.663126477874	3.24200043818972	-0.0354319682249748	0.971961255233922	0.998431161219273
Merged-chr13-107057848-3	chr13	107057742	107057942	+	792.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35272.0	NR_015471	100040322.0	Mm.133867	NR_015471	ENSMUSG00000071181	3830408C21Rik	-	RIKEN cDNA 3830408C21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-96477329-2	chr9	96477229	96477429	+	663.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001311135, intron 1 of 2)	intron (NM_001311135, intron 1 of 2)	1346.0	NM_011279	19823.0	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	-0.386402123015055	-0.375478851130345	-0.379077810169316	0.0169541881452966	-0.385725706638469	-0.0351640531106496	-0.37828572280756	0.0224452522588424	0.887965929594741	0.728727222176928	1
Merged-chr9-95574106-4	chr9	95573984	95574184	+	892.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14267.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-78494307-2	chr10	78494207	78494407	+	665.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-29359.0	NM_172134	216134.0	Mm.206159	NM_172134	ENSMUSG00000032788	Pdxk	2310036D04Rik|AA119688|C77999	pyridoxal (pyridoxine, vitamin B6) kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-17205525-2	chr16	17205425	17205625	+	637.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur3|SINE|Alu	-2610.0	NM_001033338	239731.0	Mm.86671	NM_001033338	ENSMUSG00000071636	Rimbp3	Gm1759|Gm603|RIM-BP3|mKIAA1666	RIMS binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114772480-1	chr11	114772380	114772580	+	548.0	f1_balb.idr	intron (NM_001102615, intron 2 of 19)	intron (NM_001102615, intron 2 of 19)	7091.0	NM_001102615	286942.0	Mm.308713	NM_001102615	ENSMUSG00000010021	Kif19a	Kif19	kinesin family member 19A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56476531-4	chr17	56476428	56476628	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011218)	promoter-TSS (NM_011218)	-48.0	NM_011218	19280.0	Mm.258771	NM_011218	ENSMUSG00000013236	Ptprs	AL022616|PTP|PTP-NU3|PTPNU-3|PTPsigma|Ptpt9|R-PTP-S|RPTPsigma	protein tyrosine phosphatase, receptor type, S	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-59798520-3	chr13	59798427	59798627	+	797.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153538, intron 14 of 27)	intron (NM_153538, intron 14 of 27)	24620.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-38043558-3	chr19	38043455	38043655	+	905.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001099634)	promoter-TSS (NM_001099634)	22.0	NM_001099634	226101.0	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding	2.08883816477579	2.05068199782239	1.62730342252967	2.49531379814902	2.20909647991323	2.46812760520559	2.38796025323845	2.3166688584539	0.582825727140082	0.499387964663791	0.937661471054174
Merged-chr13-34647837-3	chr13	34647749	34647949	+	651.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025831, intron 1 of 4)	intron (NM_025831, intron 1 of 4)	4832.0	NM_025831	66895.0	Mm.28943	NM_025831	ENSMUSG00000021411	Pxdc1	1300014I06Rik	PX domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-13469388-1	chr15	13469288	13469488	+	581.0	f0_balb.idr	Intergenic	Intergenic	-295713.0	NM_007666	12563.0	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-61679085-2	chr10	61678985	61679185	+	653.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_126477, intron 1 of 1)	MT2A|LTR|ERVL	-1200.0	NM_001358488	20224.0	Mm.391794	NM_009120	ENSMUSG00000020088	Sar1a	1600019H17Rik|Sara|Sara1	secretion associated Ras related GTPase 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-68672054-4	chr14	68671934	68672134	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16192.0	NM_183366	13522.0	Mm.117450	NM_010082	ENSMUSG00000014725	Adam28	C130072N01Rik|D430033C21Rik|Dtgn1|MDC-L|MDCL|TECADAM|eMDCII	a disintegrin and metallopeptidase domain 28	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-97850680-2	chr15	97850580	97850780	+	604.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6178.0	NM_001204278	56233.0	Mm.384027	NM_019572	ENSMUSG00000022475	Hdac7	5830434K02Rik|HD7|HD7a|Hdac7a|mFLJ00062	histone deacetylase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-74662167-3	chr7	74662062	74662262	+	917.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-107382.0	NM_001038643	108116.0	Mm.425467	NM_023908	ENSMUSG00000025790	Slco3a1	5830414C08Rik|Anr1|MJAM|OATP-D|R75096|Slc21a11	solute carrier organic anion transporter family, member 3a1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-3343120-5	chr5	3343033	3343233	+	931.657166	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009873)	promoter-TSS (NM_009873)	-760.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-113490165-2	chr13	113490065	113490265	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045501, intron 1 of 6)	intron (NR_045501, intron 1 of 6)	12679.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-40775647-2	chr11	40775547	40775747	+	753.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20361.0	NM_009831	12450.0	Mm.2103	NM_009831	ENSMUSG00000020326	Ccng1	AI314029	cyclin G1	protein-coding	-2.18138529563533	-2.15523716995652	-2.1631445789866	-2.16963996020037	-2.05513010215571	-2.15352360143315	-2.16135451490766	-2.16847729006863	0.759018020146679	0.829933115115583	1
Merged-chr15-78451404-2	chr15	78451304	78451504	+	649.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355601, intron 10 of 17)	intron (NM_001355601, intron 10 of 17)	17230.0	NM_001355601	71753.0	Mm.34056	NM_027902	ENSMUSG00000016942	Tmprss6	1300008A22Rik	transmembrane serine protease 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97777299-2	chr11	97777199	97777399	+	748.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_022891)	TTS (NM_022891)	-1381.0	NM_028156	72215.0	Mm.269049	NM_028156	ENSMUSG00000018543	1700001P01Rik	-	RIKEN cDNA 1700001P01 gene	protein-coding	0.0978528311952724	-0.2429523352633	-0.246964287067295	0.253762959009295	-0.254386447975188	-0.242045527653964	-0.246080949695621	0.157078642526777	-1.08727211787519	0.658842870047388	1
Merged-chr12-100080352-2	chr12	100080252	100080452	+	692.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31979.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153410360-1	chr2	153410260	153410460	+	802.666687	f0_balb.idr	3' UTR (NM_001134300, exon 11 of 11)	3' UTR (NM_001134300, exon 11 of 11)	34119.0	NM_001001986	329540.0	Mm.50600	NM_001001986	ENSMUSG00000061411	Nol4l	4931410H15|8430427H17Rik|AI429157|Gm1636	nucleolar protein 4-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-55408930-1	chr18	55408830	55409030	+	870.3333130000001	f0_balb.idr	Intergenic	Intergenic	-416339.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	1.82906663446807	2.04232044184651	1.35284866752263	2.58907771617752	2.55387878354791	2.58487069811773	2.14119367303014	2.51566303736166	0.986010393334143	0.277565883031044	0.781378569827891
Merged-chr4-45966171-4	chr4	45966058	45966258	+	987.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290475, intron 1 of 16)	intron (NM_001290475, intron 1 of 16)	823.0	NM_001290475	100121.0	Mm.275413	NM_146142	ENSMUSG00000035517	Tdrd7	5730495N10Rik|AI447470|PCTAIRE2BP	tudor domain containing 7	protein-coding	2.37069051218148	3.10417718598405	2.8060293869592	3.41339088251038	2.79682079542999	2.53079604074929	2.58868927627316	2.74214602381223	-0.589343764144633	0.396358808236651	0.883276804275027
Merged-chr18-25538407-4	chr18	25538355	25538555	+	898.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362322, intron 2 of 12)	intron (NM_001362322, intron 2 of 12)	141293.0	NM_001362337	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-95554676-2	chr9	95554576	95554776	+	747.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5141.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-31867014-3	chr16	31866931	31867131	+	970.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357281, intron 21 of 22)	L1M4c|LINE|L1	-11779.0	NM_013900	30060.0	Mm.30988	NM_013900	ENSMUSG00000022780	Meltf	CD228|MTf|Mfi2	melanotransferrin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-58163950-2	chr3	58163850	58164050	+	839.8333130000001	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040538)	promoter-TSS (NR_040538)	-143.0	NR_040538	67850.0	Mm.416968	NR_040538	ENSMUSG00000100666	1700007F19Rik	-	RIKEN cDNA 1700007F19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-12030964-4	chr17	12030838	12031038	+	736.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016694, intron 10 of 11)	intron (NM_016694, intron 10 of 11)	-88346.0	NM_026644	68262.0	Mm.258300	NM_026644	ENSMUSG00000023827	Agpat4	1500003P24Rik	1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)	protein-coding	2.42688852970493	1.2179095715077	1.4356197638062	2.13241452977345	2.4478068668434	1.22391092063307	2.21492694740708	2.24543960950106	0.505940487097234	0.643800027887674	0.983220888090013
Merged-chr5-72275422-2	chr5	72275322	72275522	+	697.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_003966, intron 15 of 22)	intron (NR_003966, intron 15 of 22)	72079.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-111068498-2	chr9	111068398	111068598	+	612.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10980.0	NM_001302376	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-99237328-2	chr11	99237228	99237428	+	749.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172946, intron 3 of 5)	MIR|SINE|MIR	-6311.0	NM_020618	57376.0	Mm.379086	NM_020618	ENSMUSG00000037935	Smarce1	2810417B20Rik|5830412H02Rik|9030408N19Rik|Baf27	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-54398909-6	chr14	54398815	54399015	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011405, intron 4 of 11)	intron (NM_011405, intron 4 of 11)	10557.0	NM_001253680	20540.0	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	1.52504792584497	1.89990100320633	2.42184718499974	2.10718073103819	2.25061196700925	2.63838107435977	2.32023582794033	3.07138558728858	1.34880039047896	0.117127343954442	0.536644808846257
Merged-chr5-41267958-2	chr5	41267859	41268059	+	711.5	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	439732.0	NM_001310592	100972.0	Mm.41555	NM_027295	ENSMUSG00000029128	Rab28	2700023P08Rik|AW496496	RAB28, member RAS oncogene family	protein-coding	1.60958591715509	1.67331279857624	1.61267480243175	2.66935047763563	1.49257071953764	1.02709210267671	1.90347475537713	0.983075723387864	-1.66904045111489	0.153673502092115	0.608506494422839
Merged-chr17-93367454-1	chr17	93367354	93367554	+	548.0	f1_balb.idr	Intergenic	Intergenic	168286.0	NM_009625	11516.0	Mm.3407	NM_009625	ENSMUSG00000024256	Adcyap1	PACAP	adenylate cyclase activating polypeptide 1	protein-coding	0.0793183991327469	0.0915787077446002	0.0875138758211259	0.224471376433055	0.496408534774965	0.0925014405613556	0.58858655194737	0.458717040998994	3.14141207429028	0.133272809614878	1
Merged-chr1-86202830-4	chr1	86202728	86202928	+	928.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027456, intron 17 of 20)	intron (NM_027456, intron 17 of 20)	48048.0	NM_001310702	78795.0	Mm.379264	NM_027456	ENSMUSG00000062590	Armc9	3830422A13Rik|4831423D23Rik|4930438O05Rik|5730415N24Rik	armadillo repeat containing 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-161110134-2	chr2	161110034	161110234	+	566.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-1048.0	NR_126509	71389.0	Mm.122738	NM_173368	ENSMUSG00000057133	Chd6	5430439G14Rik|6330406J24Rik|CHD-6	chromodomain helicase DNA binding protein 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-118659138-2	chr2	118659038	118659238	+	929.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4439.0	NM_001033254	214230.0	Mm.241857	NM_001033254	ENSMUSG00000074923	Pak6	4732456M09	p21 (RAC1) activated kinase 6	protein-coding	-0.209760027969347	0.131332623285648	0.100243439008606	-0.204754262307359	-0.20901782365097	0.138303731692234	0.107125173505429	-0.204225249152081	0.0400617529807803	0.985995398803225	1
Merged-chr15-98513848-4	chr15	98513753	98513953	+	777.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER2|LTR|ERV1	5981.0	NR_034051	100217417.0	Mm.486440	NR_034051	ENSMUSG00000065336	Snora34	MBI-89	small nucleolar RNA, H/ACA box 34	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36274465-2	chr1	36274365	36274565	+	943.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1040.0	NM_153408	214854.0	Mm.389110	NM_153408	ENSMUSG00000047180	Neurl3	2010300P06Rik|Lincr	neuralized E3 ubiquitin protein ligase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69425219-2	chr11	69425119	69425319	+	680.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081330, intron 77 of 85)	intron (NM_001081330, intron 77 of 85)	-11544.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-125322791-2	chr2	125322691	125322891	+	795.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007993, intron 50 of 65)	intron (NM_007993, intron 50 of 65)	75276.0	NM_023595	110074.0	Mm.282499	NM_023595	ENSMUSG00000027203	Dut	5031412I06Rik|5133400F09Rik|D2Bwg0749e|Dutp|dUTPase	deoxyuridine triphosphatase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-84691565-2	chr18	84691465	84691665	+	638.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5863.0	NM_023149	66054.0	Mm.29646	NM_023149	ENSMUSG00000024644	Cndp2	0610010E05Rik|C76600|Cn2|Dip-2|Pep-1|Pep1	CNDP dipeptidase 2 (metallopeptidase M20 family)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-45155892-2	chr19	45155792	45155992	+	650.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021901, intron 2 of 2)	CpG	5177.0	NM_021901	21908.0	Mm.391203	NM_021901	ENSMUSG00000025215	Tlx1	Hox-11|Hox11|Tlx-1	T cell leukemia, homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125166599-4	chr6	125166492	125166692	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008084)	promoter-TSS (NM_008084)	-125.0	NM_001289726	14433.0	Mm.304088	NM_008084	ENSMUSG00000057666	Gapdh	Gapd	glyceraldehyde-3-phosphate dehydrogenase	protein-coding	4.09711899924213	3.03872422657819	3.82120523667642	2.05851108709966	3.31601206369031	3.28625618883193	3.5938620609535	1.55224790023926	-0.526871068129609	0.490873881812183	0.934345795476137
Merged-chr3-108296581-2	chr3	108296474	108296674	+	797.5	f0_balb.idr|f1_c57bl6.idr	intron (NM_019972, intron 1 of 19)	intron (NM_019972, intron 1 of 19)	12510.0	NM_019972	20661.0	Mm.157119	NM_019972	ENSMUSG00000068747	Sort1	2900053A11Rik|AI852375|Ntr3|Ntsr3	sortilin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99537128-3	chr7	99536983	99537183	+	925.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178220, intron 1 of 14)	MIR|SINE|MIR	1597.0	NM_177231	109689.0	Mm.260193	NM_177231	ENSMUSG00000018909	Arrb1	1200006I17Rik|AW208571|G430100A01Rik	arrestin, beta 1	protein-coding	-1.31349849087795	-1.28274354783242	-1.29349452597086	-1.3023256995151	-1.3130151546297	-1.28041376602105	-0.694015972326031	-1.30074492367298	2.57396649482007	0.456321314346772	1
Merged-chr14-61058122-2	chr14	61058022	61058222	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-11267.0	NM_013869	29820.0	Mm.281356	NM_013869	ENSMUSG00000060548	Tnfrsf19	AL023044|AW123854|TAJ|TAJ-ALPHA|TRADE|Troy	tumor necrosis factor receptor superfamily, member 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-53996030-2	chr5	53995930	53996130	+	723.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2493.0	NM_001081103	116873.0	Mm.265985	NM_054083	ENSMUSG00000039156	Stim2	-	stromal interaction molecule 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-135008414-4	chr6	135008326	135008526	+	946.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3186.0	NM_026360	67755.0	Mm.166524	NM_026360	ENSMUSG00000030204	Ddx47	4930588A18Rik|C77285	DEAD (Asp-Glu-Ala-Asp) box polypeptide 47	protein-coding	3.68450696501942	4.15575354109615	5.13311802712239	4.94069232088036	4.96981004653479	4.33311887742579	5.02895564954658	5.44714783702671	0.496546713313473	0.232625935521718	0.727877916220547
Merged-chr14-72449716-2	chr14	72449616	72449816	+	551.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	260287.0	NM_207636	319448.0	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81195434-2	chr10	81195334	81195534	+	606.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_015477, intron 1 of 2)	intron (NR_015477, intron 1 of 2)	743.0	NR_015477	69678.0	Mm.81562	NR_015477		Atcayos	2310050B05Rik	ataxia, cerebellar, Cayman type, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-82807586-4	chr15	82807481	82807681	+	862.895874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13336.0	NM_029562	76279.0	Mm.439931	NM_029562	ENSMUSG00000022445	Cyp2d26	1300006E06Rik	cytochrome P450, family 2, subfamily d, polypeptide 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-43040736-4	chr17	43040642	43040842	+	984.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178589, intron 3 of 5)	RSINE1|SINE|B4	24187.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	3.30038490585649	2.49804535068447	1.18657390424895	1.96636643630478	2.22385770160335	1.22992634199415	1.6954349084431	2.23663919102574	-1.2369336521044	0.237066141326487	0.733808141787246
Merged-chr9-4021661-2	chr9	4021561	4021761	+	857.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	287833.0	NM_026276	67618.0	Mm.33970	NM_026276	ENSMUSG00000025894	Aasdhppt	2010309J24Rik|2810407B07Rik|AASD-PPT|CGI-80|LYS2|LYS5	aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52650775-2	chr13	52650675	52650875	+	650.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	53893.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-29856644-2	chr2	29856544	29856744	+	549.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10917.0	NR_029838	723904.0		NR_029838	ENSMUSG00000065485	Mir219a-2	Mir219-2|Mirn219-2|mir-219a-2|mmu-mir-219a-2	microRNA 219a-2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-38663216-2	chr15	38663116	38663316	+	813.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025494, intron 1 of 12)	B1_Mur2|SINE|Alu	1312.0	NM_025494	66335.0	Mm.276618	NM_025494	ENSMUSG00000022295	Atp6v1c1	1700025B18Rik|U13839	ATPase, H+ transporting, lysosomal V1 subunit C1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-62011928-4	chr15	62011834	62012034	+	877.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-26052.0	NR_132747	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-75596247-4	chr7	75596144	75596344	+	926.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 5 of 36)	intron (NM_029332, intron 5 of 36)	140710.0	NM_029332	75547.0	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-38888190-2	chr3	38888090	38888290	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_183221, exon 1 of 17)	exon (NM_183221, exon 1 of 17)	1250.0	NM_183221	329628.0	Mm.316210	NM_183221	ENSMUSG00000046743	Fat4	6030410K14Rik|9430004M15	FAT atypical cadherin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-121309416-4	chr9	121309324	121309524	+	736.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152160, intron 1 of 17)	intron (NR_152160, intron 1 of 17)	11922.0	NR_152160	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	-1.02988723960316	-0.979491778880063	-1.15874571971794	-1.16754454549382	-1.17100780481324	-0.977170530843046	-0.987778506119732	-1.16596955988677	0.198320756834925	0.944925584932473	1
Merged-chr8-40296626-3	chr8	40296525	40296725	+	725.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9672.0	NM_030610	80857.0	Mm.425526	NM_030610	ENSMUSG00000031603	Fgf20	-	fibroblast growth factor 20	protein-coding	0.50701804447396	0.071279451452111	0.0661513916606698	0.46891665020746	0.0566461132716236	0.260545498565189	0.620838706149242	0.062894410516369	-0.15958796485849	0.939187552151408	1
Merged-chr4-136207545-2	chr4	136207445	136207645	+	770.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001008232, intron 1 of 24)	intron (NM_001008232, intron 1 of 24)	1180.0	NM_001355698	230837.0	Mm.77788	NM_001008232	ENSMUSG00000036995	Asap3	9430088F20Rik|Ddefl1|Gm140|UPLC1	ArfGAP with SH3 domain, ankyrin repeat and PH domain 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34249966-4	chr17	34249867	34250067	+	944.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11062.0	NM_010389	15002.0	Mm.327358	NM_010389	ENSMUSG00000041538	H2-Ob	A-beta-2|A-beta2|H-2Ab|H-2I|H-2Ob|H2-Ab|H2-Ab2|H2-IAb2|Ob	histocompatibility 2, O region beta locus	protein-coding	4.33043083307602	5.55968827463834	5.53947322835586	5.4850433672117	4.2116137616237	5.26249738574163	6.07623172887271	4.92790820744769	-0.0340838363546956	0.933070245755481	0.998431161219273
Merged-chr4-145196761-4	chr4	145196658	145196858	+	830.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1753.0	NM_001276465	230895.0	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34029080-3	chr17	34028900	34029100	+	683.233337	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013543)	promoter-TSS (NM_013543)	-945.0	NM_013543	14979.0	Mm.275452	NM_013543	ENSMUSG00000073422	H2-Ke6	D17H6S112E|H-2Ke6|Hsd17b8|Ke-6|Ke6|Ring2	H2-K region expressed gene 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-142900591-4	chr2	142900496	142900696	+	936.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355123, intron 1 of 26)	intron (NM_001355123, intron 1 of 26)	868.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-7580831-1	chr19	7580731	7580931	+	580.5	f0_balb.idr	intron (NM_001362425, intron 4 of 4)	intron (NM_001362425, intron 4 of 4)	23346.0	NM_001362425	225845.0	Mm.274810	NM_139269	ENSMUSG00000060675	Pla2g16	AdPLA|C78643|HRSL3|Hrasls3|Hrev107|MLP-3	phospholipase A2, group XVI	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167985320-2	chr2	167985220	167985420	+	556.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080708, intron 15 of 21)	intron (NM_001080708, intron 15 of 21)	25273.0	NM_001080708	69553.0	Mm.68454	NM_001080708	ENSMUSG00000074577	Ripor3	2310033K02Rik|Fam65c|Gm124	RIPOR family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-62400342-1	chr7	62400242	62400442	+	944.0	f0_balb.idr	Intergenic	Intergenic	19797.0	NM_011746	22652.0	Mm.146	NM_011746	ENSMUSG00000070527	Mkrn3	D7H15S9-1|Zfp127	makorin, ring finger protein, 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64806305-4	chr5	64806194	64806394	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008453, intron 1 of 5)	intron (NM_008453, intron 1 of 5)	2771.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-43571964-2	chr17	43571864	43572064	+	779.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013737, intron 1 of 11)	intron (NM_013737, intron 1 of 11)	3513.0	NM_013737	27226.0	Mm.9277	NM_013737	ENSMUSG00000023913	Pla2g7	PAF-AH|R75400	phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	protein-coding	-0.911481480886591	-0.898215642992522	-0.459082056543934	-0.907960834089373	-0.536665650048259	-0.895592930349906	-0.905223025989836	-0.90758942202298	-0.317626373511902	0.91927360265618	1
Merged-chr7-132387760-4	chr7	132387662	132387862	+	856.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR40|LTR|ERVK	-70534.0	NM_029935	77590.0	Mm.213582	NM_029935	ENSMUSG00000030930	Chst15	4631426J05Rik|BRAG|GalNAc4S-6ST|GalNAcS-6ST|MAd5|mKIAA0598	carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-124668568-7	chr2	124668480	124668680	+	832.115662	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_172537)	TTS (NM_172537)	14999.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-86888083-4	chr8	86887974	86888174	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2816.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-94178381-2	chr8	94178281	94178481	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013602)	promoter-TSS (NM_013602)	-708.0	NM_013602	17748.0	Mm.192991	NM_013602	ENSMUSG00000031765	Mt1	MT-I|Mt-1	metallothionein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124812932-2	chr6	124812832	124813032	+	811.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009415, intron 1 of 6)	intron (NM_009415, intron 1 of 6)	1364.0	NM_009415	21991.0	Mm.4222	NM_009415	ENSMUSG00000023456	Tpi1	AI255506|TIM|Tpi|Tpi-1	triosephosphate isomerase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5659780-2	chr19	5659680	5659880	+	799.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164481, intron 4 of 17)	intron (NM_001164481, intron 4 of 17)	3927.0	NM_001164482	20469.0	Mm.3072	NM_011379	ENSMUSG00000056917	Sipa1	Spa1	signal-induced proliferation associated gene 1	protein-coding	0.160336078509109	-0.0775230707442276	-0.0820746938014258	0.0697448663150434	0.601185189092218	-0.0764947952926881	0.0899425708489663	0.0724953304086929	1.57593894692599	0.449057565728651	1
Merged-chr9-56937398-4	chr9	56937284	56937484	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133976)	promoter-TSS (NM_133976)	-116.0	NM_133976	102462.0	Mm.12864	NM_133976	ENSMUSG00000032288	Imp3	1190002L16Rik|AI256594	IMP3, U3 small nucleolar ribonucleoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-78668516-4	chr14	78668413	78668613	+	900.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081336, intron 2 of 29)	intron (NM_001081336, intron 2 of 29)	-24062.0	NR_104044	380921.0	Mm.89591	NM_001081336	ENSMUSG00000034731	Dgkh	5930402B05Rik|D130015C16|DGK	diacylglycerol kinase, eta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-5444940-4	chr16	5444851	5445051	+	893.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-188995.0	NM_027446	70511.0	Mm.45780	NM_027446	ENSMUSG00000022544	Eef2kmt	5730409G15Rik|Fam86|Fam86a|eEF2-KMT	eukaryotic elongation factor 2 lysine methyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-23464650-3	chr13	23464466	23464666	+	733.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013483, exon 3 of 8)	exon (NM_013483, exon 3 of 8)	1335.0	NM_013483	12231.0	Mm.1420	NM_013483	ENSMUSG00000000706	Btn1a1	Btn	butyrophilin, subfamily 1, member A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-53745144-4	chr18	53745048	53745248	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178686)	promoter-TSS (NM_178686)	-601.0	NM_178686	225523.0	Mm.193678	NM_178686	ENSMUSG00000048799	Cep120	A230075C01|AU016693|Ccdc100	centrosomal protein 120	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-90712502-4	chr16	90712368	90712568	+	921.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14903.0	NM_025642	66578.0	Mm.180363	NM_025642	ENSMUSG00000022978	Mis18a	2610039C10Rik|2810018N07Rik	MIS18 kinetochore protein A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52016707-2	chr13	52016607	52016807	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-80034.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96171618-2	chr3	96171518	96171718	+	544.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153053)	promoter-TSS (NM_153053)	-888.0	NM_153053	107701.0	Mm.219671	NM_153053	ENSMUSG00000068856	Sf3b4	SF3b49|SF3b50|Sap49	splicing factor 3b, subunit 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-25222566-2	chr12	25222466	25222666	+	769.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	93392.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-70746032-2	chr17	70745932	70746132	+	576.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347411, intron 9 of 14)	LTR73|LTR|ERV1	100745.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	-2.18292257394068	-2.15545247547656	-2.03304972317742	-2.17058342868585	-2.18099422382073	-2.1536522739386	-2.16187909550322	-2.16936197735154	-0.683654500252594	0.846597994014493	1
Merged-chr12-102750133-2	chr12	102750033	102750233	+	719.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001142939, intron 1 of 1)	intron (NM_001142939, intron 1 of 1)	6373.0	NM_177140	320351.0	Mm.86546	NM_177140	ENSMUSG00000046675	Tmem251	D230037D09Rik	transmembrane protein 251	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-12934118-4	chr2	12934010	12934210	+	960.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008961, intron 1 of 4)	intron (NM_008961, intron 1 of 4)	10069.0	NM_001305437	19212.0	Mm.229322	NM_008961	ENSMUSG00000026730	Pter	AI790318|Mpr56-1	phosphotriesterase related	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-114719999-1	chr5	114719899	114720099	+	1000.0	f1_balb.idr	TTS (NR_105995)	TTS (NR_105995)	484.0	NR_105995	102465622.0		NR_105995	ENSMUSG00000098656	Mir7028	Gm27674|mmu-mir-7028	microRNA 7028	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91379208-4	chr16	91379167	91379367	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347258, intron 1 of 7)	intron (NM_001347258, intron 1 of 7)	6484.0	NM_001110498	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27508460-2	chr2	27508360	27508560	+	815.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-6687.0	NM_080848	140858.0	Mm.28265	NM_080848	ENSMUSG00000026917	Wdr5	2410008O07Rik|AA408785|AA960360|Big|Big-3	WD repeat domain 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-114934286-4	chr4	114934161	114934361	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-8248.0	NM_015758	30923.0	Mm.377122	NM_015758	ENSMUSG00000044518	Foxe3	FREAC8|dyl|rct	forkhead box E3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126863743-2	chr7	126863601	126863801	+	831.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_172746, exon 4 of 7)	exon (NM_172746, exon 4 of 7)	1729.0	NM_172746	233876.0	Mm.363427	NM_172746	ENSMUSG00000042606	Hirip3	B130036O03|C86302	HIRA interacting protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-122969311-1	chr6	122969211	122969411	+	552.0	f0_balb.idr	intron (NM_153197, intron 5 of 5)	intron (NM_153197, intron 5 of 5)	16667.0	NM_153197	73149.0	Mm.25684	NM_153197	ENSMUSG00000043832	Clec4a3	3110037K17Rik|Dcir3	C-type lectin domain family 4, member a3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101145636-4	chr15	101145498	101145698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001277259)	TTS (NM_001277259)	17076.0	NM_001277257	11482.0	Mm.279542	NM_009612	ENSMUSG00000000530	Acvrl1	AI115505|AI427544|Acvrlk1|Alk1	activin A receptor, type II-like 1	protein-coding	5.59941119602104	6.33685109608487	5.75944200790596	5.73896923817876	5.75424436523313	6.2021581430806	4.08087288760915	6.24114771102382	-0.107067003201126	0.766650428054946	0.998431161219273
Merged-chr14-121995960-2	chr14	121995889	121996089	+	650.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_026861, intron 7 of 8)	MLT1B|LTR|ERVL-MaLR	-30796.0	NM_183031	321019.0	Mm.265618	NM_183031	ENSMUSG00000051212	Gpr183	Ebi2	G protein-coupled receptor 183	protein-coding	2.02963356285159	2.33846407840216	0.713172728321109	2.00902901849948	0.899906879079274	0.740903657972965	0.718270168878664	0.698175282584838	-4.62745625709815	0.00228937719197343	0.0369192843404532
Merged-chr5-113636494-4	chr5	113636398	113636598	+	920.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008153, intron 1 of 2)	intron (NM_008153, intron 1 of 2)	7105.0	NM_001359060	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-39608679-1	chr1	39608579	39608779	+	681.0	f0_balb.idr	Intergenic	Intergenic	-31332.0	NM_001033135	67702.0	Mm.28614	NM_001033135	ENSMUSG00000048234	Rnf149	1600023E10Rik|AV037261|C76763|Gm15832|Greul4	ring finger protein 149	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-45607533-4	chr14	45607415	45607615	+	906.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176845, intron 8 of 12)	intron (NM_176845, intron 8 of 12)	50538.0	NR_039593	100628600.0		NR_039593	ENSMUSG00000093167	Mir5131	mmu-mir-5131|mu-mir-5131	microRNA 5131	ncRNA	-1.32440223303897	-1.29339468673833	-0.717877708899544	-1.31276353204239	-1.32392690786997	-1.29109028300231	-1.30162128075409	-1.31119997543009	-2.49510383040271	0.470258445164311	1
Merged-chr5-103388041-2	chr5	103387941	103388141	+	843.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR40a|LTR|ERVL	-37151.0	NM_011204	19249.0	Mm.3414	NM_011204	ENSMUSG00000034573	Ptpn13	AI324989|PTP-BL|PTPL1|Ptpri|RIP	protein tyrosine phosphatase, non-receptor type 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-114626634-2	chr5	114626534	114626734	+	726.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_022017, intron 13 of 15)	intron (NM_022017, intron 13 of 15)	31787.0	NM_022017	63873.0	Mm.266450	NM_022017	ENSMUSG00000014158	Trpv4	0610033B08Rik|OTRPC4|Trp12|VR-OAC|VRL-2|VROAC	transient receptor potential cation channel, subfamily V, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-82048176-4	chr10	82048095	82048295	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001319203)	promoter-TSS (NM_001319203)	68.0	NM_001024626	408062.0	Mm.391409	NM_001024626	ENSMUSG00000061371	Zfp873	-	zinc finger protein 873	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-44159950-2	chr1	44159850	44160050	+	552.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011729, intron 4 of 14)	B1_Mur3|SINE|Alu	12206.0	NM_011729	22592.0	Mm.2213	NM_011729	ENSMUSG00000026048	Ercc5	Xpg	excision repair cross-complementing rodent repair deficiency, complementation group 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-31467027-4	chr15	31466936	31467136	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172606, intron 23 of 25)	intron (NM_172606, intron 23 of 25)	-13347.0	NM_145852	252967.0	Mm.436668	NM_145852	ENSMUSG00000022236	Ropn1l	ASP|AV047578|Akapasp	ropporin 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166554130-4	chr2	166554021	166554221	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10401.0	NR_152154	433503.0	Mm.491336	NR_152154		Gm29679	-	predicted gene, 29679	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-94786551-4	chr3	94786463	94786663	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001037711)	promoter-TSS (NM_001037711)	-48.0	NM_001037711	70737.0	Mm.87634	NM_001037711	ENSMUSG00000068876	Cgn	6330408J11Rik	cingulin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-137844861-3	chr4	137844799	137844999	+	822.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17338.0	NM_199307	230857.0	Mm.401062	NM_199307	ENSMUSG00000057530	Ece1	AW322500|ECE-1|ECE-1a|ECE-1b|ECE-1d	endothelin converting enzyme 1	protein-coding	2.82210574498941	2.47642172714629	2.62505078706584	2.64877000043589	3.08731377386983	2.35153991171323	2.1166140481661	1.42203006305463	-0.503283229406213	0.556623737765988	0.960321604678676
Merged-chr17-24719985-4	chr17	24719875	24720075	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008503)	promoter-TSS (NM_008503)	-10.0	NR_027900	73474.0	Mm.443320	NR_027900	ENSMUSG00000090101	Snhg9	1700072N11Rik	small nucleolar RNA host gene 9	ncRNA	7.29245542083014	7.52751741960977	7.75272866308991	6.93237734919707	7.59018169791393	8.0858095385064	8.07354264896037	7.65917704419536	0.47983434195667	0.00876602400695447	0.098994085470942
Merged-chr9-40325829-4	chr9	40325715	40325915	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151734, intron 3 of 18)	intron (NR_151734, intron 3 of 18)	-4492.0	NM_001357622	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-163596137-2	chr2	163596037	163596237	+	548.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6177.0	NM_181734	76080.0	Mm.89828	NM_029512	ENSMUSG00000017679	Ttpal	3110080A02Rik|5830472M02Rik	tocopherol (alpha) transfer protein-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99537542-2	chr7	99537442	99537642	+	747.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_178220, intron 1 of 14)	intron (NM_178220, intron 1 of 14)	2056.0	NM_177231	109689.0	Mm.260193	NM_177231	ENSMUSG00000018909	Arrb1	1200006I17Rik|AW208571|G430100A01Rik	arrestin, beta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76015280-2	chr15	76015180	76015380	+	582.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134087)	promoter-TSS (NM_134087)	-944.0	NM_134087	105732.0	Mm.267178	NM_134087	ENSMUSG00000046761	Fam83h	AA409316	family with sequence similarity 83, member H	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-47731498-1	chr9	47731398	47731598	+	556.0	f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	B3A|SINE|B2	86710.0	NR_046048	100038460.0	Mm.447649	NR_046048		Gm10677	-	predicted gene 10677	ncRNA	0.365328555985245	-0.225042842897193	-0.229044644092415	-0.0786534313587056	0.121654908327001	-0.224138102719395	-0.228163682339514	-0.0759840417500054	-0.72418486222798	0.752441979144525	1
Merged-chr12-78919502-4	chr12	78919405	78919605	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12567.0	NM_013738	27260.0	Mm.103380	NM_013738	ENSMUSG00000021118	Plek2	-	pleckstrin 2	protein-coding	5.39376704238322	5.97241167620697	4.98348632770807	5.48914144097912	5.85488155263964	5.50170864647374	5.01911336769581	4.91731225927715	-0.135900973266028	0.67359155040362	0.99440487726309
Merged-chr6-50545683-7	chr6	50545595	50545795	+	986.714294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20779.0	NM_007808	13063.0	Mm.35389	NM_007808	ENSMUSG00000063694	Cycs	-	cytochrome c, somatic	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-45559175-2	chr19	45559075	45559275	+	880.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001330506, intron 3 of 9)	intron (NM_001330506, intron 3 of 9)	1389.0	NM_001330506	56626.0	Mm.46509	NM_020032	ENSMUSG00000025218	Poll	1110003P06Rik|AV007317	polymerase (DNA directed), lambda	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-64250614-3	chr13	64250557	64250757	+	645.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045798, intron 1 of 2)	T-rich|Low_complexity|Low_complexity	1957.0	NR_045798	66503.0	Mm.443331	NR_045798	ENSMUSG00000097101	1810034E14Rik	-	RIKEN cDNA 1810034E14 gene	ncRNA	1.32336759214491	1.50035763499153	0.826939368602195	1.15180771783796	1.43154608513908	1.38208702009351	0.829609492356191	1.40761692628978	0.254124394948412	0.850282754865029	0.998431161219273
Merged-chr6-116009745-2	chr6	116009645	116009845	+	776.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14740.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-106434343-2	chr1	106434244	106434444	+	731.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	112287.0	NR_106164	102466254.0		NR_106164	ENSMUSG00000098344	Mir3473f	Gm27846|mmu-mir-3473f	microRNA 3473f	ncRNA	1.40910321078634	2.26915308331304	0.949565616364384	1.94434990354891	1.75864264145771	1.6044744108494	1.19034079335049	0.936527576721808	-1.01373381494567	0.415188399128642	0.896676881011847
Merged-chr1-51792716-2	chr1	51792616	51792816	+	659.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_010863, intron 13 of 29)	intron (NM_010863, intron 13 of 29)	123262.0	NM_001161817	17912.0	Mm.3390	NM_010863	ENSMUSG00000018417	Myo1b	AA406997|MIH-L|MMIa	myosin IB	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-75922781-2	chr15	75922681	75922881	+	842.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1221.0	NM_025412	66194.0	Mm.250599	NM_025412	ENSMUSG00000022571	Pycrl	1110058B13Rik|2700073G24Rik|Pycr3	pyrroline-5-carboxylate reductase-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-122404915-1	chr7	122404815	122405015	+	588.5	f0_balb.idr	intron (NM_001316672, intron 2 of 16)	intron (NM_001316672, intron 2 of 16)	115790.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-144714783-4	chr2	144714669	144714869	+	937.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025314, intron 4 of 5)	RMER13B|LTR|ERVK	-108897.0	NM_025490	66328.0	Mm.45377	NM_025490	ENSMUSG00000027431	Scp2d1	1700010M22Rik	SCP2 sterol-binding domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-145866833-3	chr2	145866742	145866942	+	893.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028724, intron 9 of 12)	intron (NM_028724, intron 9 of 12)	-36399.0	NM_026425	67877.0	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	1.43537968626727	0.486520552764841	0.477261652561419	0.8018375419694	1.080512004845	0.877636875706516	0.676208933903378	0.471320644764814	-0.390388928791838	0.81491734938076	1
Merged-chr7-141470283-2	chr7	141470183	141470383	+	806.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111049, intron 6 of 7)	intron (NM_001111049, intron 6 of 7)	1494.0	NM_001111050	12476.0	Mm.30246	NM_009842	ENSMUSG00000025510	Cd151	PETA-3|SFA-1|Tspan24	CD151 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6928192-2	chr19	6928092	6928292	+	684.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008431, intron 3 of 6)	intron (NM_008431, intron 3 of 6)	-2812.0	NM_001039494	67077.0	Mm.251306	NM_001039494	ENSMUSG00000050623	Catsperz	1700019N12Rik|A430107B04Rik|MLZ-622|Tex40	cation channel sperm associated auxiliary subunit zeta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78570548-2	chr15	78570448	78570648	+	918.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009008, intron 2 of 6)	intron (NM_009008, intron 2 of 6)	2235.0	NM_009008	19354.0	Mm.1972	NM_009008	ENSMUSG00000033220	Rac2	AI323801|AI452260	Rac family small GTPase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19638081-2	chr7	19637981	19638181	+	586.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019649, intron 7 of 13)	intron (NM_019649, intron 7 of 13)	-8643.0	NM_009046	19698.0	Mm.1741	NM_009046	ENSMUSG00000002983	Relb	shep	avian reticuloendotheliosis viral (v-rel) oncogene related B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123937971-1	chr5	123937871	123938071	+	678.0	f1_balb.idr	intron (NM_001134767, intron 3 of 12)	intron (NM_001134767, intron 3 of 12)	7282.0	NM_001134767	208908.0	Mm.243679	NM_001134767	ENSMUSG00000061882	Ccdc62	AI661708|G1-485-3|Gm150|repro29	coiled-coil domain containing 62	protein-coding	0.305266756079194	0.334177003569887	0.528820716522404	0.317541861058577	0.958437997575406	1.35723338265664	0.852451881506436	0.318821084827572	3.72473742171615	0.0435209279563679	1
Merged-chr12-80083366-4	chr12	80083260	80083460	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29653.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-37233849-3	chr19	37233797	37233997	+	592.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	26352.0	NM_001164336	69104.0	Mm.175989	NM_027314	ENSMUSG00000023307	March5	1810015H18Rik|2310008I22Rik|2700055A20Rik|5730499H23Rik|E130202O05Rik|MARCH-V|MITOL|Marchv|Rnf153	membrane-associated ring finger (C3HC4) 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-10784654-3	chr16	10784575	10784775	+	920.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001271603, exon 2 of 2)	exon (NM_001271603, exon 2 of 2)	861.0	NM_009896	12703.0	Mm.130	NM_009896	ENSMUSG00000038037	Socs1	Cish1|Cish7|JAB|SOCS-1|SSI-1	suppressor of cytokine signaling 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180343057-4	chr1	180342964	180343164	+	994.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081175, intron 2 of 7)	intron (NM_001081175, intron 2 of 7)	-12515.0	NR_003623	277333.0	Mm.389223	NM_199472		Gm5069	EG277333	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-89031365-4	chr11	89031265	89031465	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29383.0	NM_019505	56077.0	Mm.153695	NM_019505	ENSMUSG00000000276	Dgke	C87606|DAGK6|DGK	diacylglycerol kinase, epsilon	protein-coding	3.36026769548905	2.72057378160884	4.17831013858813	3.5376114714998	1.92767910173066	2.58357984585246	2.31513576606697	3.11278386421551	-1.68907462716882	0.0147858564201425	0.143683076670251
Merged-chr2-45103166-4	chr2	45103066	45103266	+	785.214294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149354, intron 2 of 2)	intron (NR_149354, intron 2 of 2)	7111.0	NM_001289521	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-28641118-7	chr2	28641025	28641225	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022887)	promoter-TSS (NM_022887)	-108.0	NM_001289575	64930.0	Mm.224354	NM_022887	ENSMUSG00000026812	Tsc1	-	tuberous sclerosis 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-64001289-2	chr7	64001189	64001389	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-62374.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5886112-2	chr19	5886012	5886212	+	766.666626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001361973)	TTS (NM_001361973)	8016.0	NM_001362045	332359.0	Mm.329642	NM_198634	ENSMUSG00000044390	Tigd3	-	tigger transposable element derived 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-106345439-4	chr1	106345325	106345525	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133821, intron 8 of 16)	intron (NM_133821, intron 8 of 16)	173556.0	NM_133821	98432.0	Mm.24115	NM_133821	ENSMUSG00000044340	Phlpp1	AI836256|Phlpp|Plekhe1|SCOP|mKIAA0606	PH domain and leucine rich repeat protein phosphatase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-65684032-4	chr18	65683933	65684133	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361052, intron 7 of 8)	intron (NM_001361052, intron 7 of 8)	-14235.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	6.83182466559981	6.84151394027101	6.24012643260266	6.36181128766548	6.77130506923066	6.16799426159587	6.59911237029623	6.24593038114047	-0.130561705365793	0.560246029675276	0.960321604678676
Merged-chr1-140268543-3	chr1	140268427	140268627	+	710.366638	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081027, intron 1 of 27)	intron (NM_001081027, intron 1 of 27)	22270.0	NM_001081027	240776.0	Mm.483845	NM_001081027	ENSMUSG00000052726	Kcnt2	E330038N15Rik|Slick	potassium channel, subfamily T, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-142818928-4	chr5	142818816	142819016	+	912.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1529.0	NM_001122730	231861.0	Mm.354649	NM_178242	ENSMUSG00000039477	Tnrc18	BC025631|EG381742|Zfp469	trinucleotide repeat containing 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-150165846-4	chr1	150165742	150165942	+	952.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_110420)	promoter-TSS (NR_110420)	-894.0	NR_110420	102639566.0	Mm.417208	NR_110420	ENSMUSG00000097754	Ptgs2os2	Gm26687|Linc-cox2|Lincrna-cox2	prostaglandin-endoperoxide synthase 2, opposite strand 2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-22786936-1	chr4	22786836	22787036	+	653.0	f1_balb.idr	Intergenic	L1_Mus3|LINE|L1	296388.0	NR_131335	105500046.0		NR_131335	ENSMUSG00000107859	Gm30731	Pnky|lnc-pou3f2	predicted gene, 30731	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-57121623-5	chr16	57121489	57121689	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138599)	promoter-TSS (NM_138599)	-125.0	NM_138599	28185.0	Mm.196933	NM_138599	ENSMUSG00000022752	Tomm70a	2610044B22Rik|D16Ium22|D16Ium22e|D16Wsu109e|Tom70|Tomm70|mKIAA0719	translocase of outer mitochondrial membrane 70A	protein-coding	5.05432405849444	5.60593991675745	5.99079735545561	4.85712549083344	5.41519394999895	4.16411350198922	5.51089438044191	4.24111492093858	-0.541422987539123	0.170272057267414	0.637742678676777
Merged-chr6-31219858-2	chr6	31219758	31219958	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040257)	promoter-TSS (NR_040257)	-493.0	NR_040260	73652.0	Mm.441297	NR_040257	ENSMUSG00000087380	2210408F21Rik	-	RIKEN cDNA 2210408F21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-64391534-2	chr8	64391434	64391634	+	555.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	122907.0	NR_030491	735270.0		NR_030491	ENSMUSG00000076042	Mir710	Mirn710|mmu-mir-710	microRNA 710	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-32676295-3	chr9	32676187	32676387	+	674.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19755.0	NM_011808	23871.0	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-4031157-4	chr18	4030989	4031189	+	925.395874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-134743.0	NM_026092	67328.0	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133907420-6	chr4	133907507	133907707	+	923.2777710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19810.0	NM_009097	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	-1.18222045008182	-0.978438292940914	-1.16770109385923	-1.17699121268927	-1.18171183814936	-0.648785584566264	-1.16514082719289	-1.17532828586041	1.59252109794841	0.622914666369258	1
Merged-chr16-57216213-4	chr16	57216136	57216336	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026254, intron 2 of 17)	intron (NM_026254, intron 2 of 17)	-14765.0	NM_001358434	67581.0	Mm.257819	NM_026254	ENSMUSG00000022749	Tbc1d23	4930451A13Rik|AU015720|AU043671|AU043778|D030022P07Rik|W51689	TBC1 domain family, member 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-121098122-4	chr4	121098027	121098227	+	939.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_172700, exon 1 of 10)	5' UTR (NM_172700, exon 1 of 10)	116.0	NM_172700	230709.0	Mm.34399	NM_172700	ENSMUSG00000043207	Zmpste24	A530043O15Rik|D030046F19|FACE1|Face-1|MADB|STE24|Ste24p	zinc metallopeptidase, STE24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-59028140-3	chr19	59028054	59028254	+	949.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114312, intron 8 of 16)	intron (NM_001114312, intron 8 of 16)	47915.0	NM_175172	71653.0	Mm.37338	NM_175172	ENSMUSG00000041362	Shtn1	4930506M07Rik|Shootin1|mKIAA1598	shootin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-24675553-3	chr12	24675425	24675625	+	891.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004455, intron 1 of 4)	intron (NM_001004455, intron 1 of 4)	6270.0	NM_138686	12879.0	Mm.52265	NM_138686	ENSMUSG00000062563	Cys1	2900006B19Rik|AV218859|Ccap|ck|cpk	cystin 1	protein-coding	2.35669706964492	2.02911886917872	1.09706384919863	1.64201205869522	2.09310770880383	2.04507239117723	1.53733855620703	1.08199440579808	-0.316536082208196	0.784197264334092	0.998431161219273
Merged-chr6-93127618-4	chr6	93127518	93127718	+	959.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	187036.0	NR_015530	330385.0	Mm.483472	NR_015530	ENSMUSG00000097462	9530026P05Rik	B430306B02	RIKEN cDNA 9530026P05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-36763896-3	chr15	36763796	36763996	+	879.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	27036.0	NM_001253807	22631.0	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-134714867-2	chr5	134714767	134714967	+	629.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007925, intron 23 of 36)	intron (NM_007925, intron 23 of 36)	-26277.0	NM_010717	16885.0	Mm.15409	NM_010717	ENSMUSG00000029674	Limk1	KIZ-1|LIMK-1|Limk	LIM-domain containing, protein kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-86509044-2	chr1	86508944	86509144	+	595.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17513.0	NR_153834	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-136921147-4	chr2	136921051	136921251	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355671, intron 2 of 6)	intron (NM_001355671, intron 2 of 6)	21800.0	NM_001038641	74243.0	Mm.330612	NM_028201	ENSMUSG00000027281	Slx4ip	2210009G21Rik|2410004I22Rik|C85661|Slxip	SLX4 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-120153760-2	chr6	120153660	120153860	+	709.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_016718, intron 1 of 3)	intron (NM_016718, intron 1 of 3)	-40063.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81283679-2	chr10	81283579	81283779	+	695.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013769, intron 2 of 20)	intron (NM_013769, intron 2 of 20)	2102.0	NM_001282096	27375.0	Mm.27984	NM_013769	ENSMUSG00000034917	Tjp3	-	tight junction protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-26887127-7	chr8	26887045	26887245	+	966.0714109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	-62722.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-127045656-4	chr4	127045568	127045768	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15486.0	NM_026670	68310.0	Mm.273806	NM_026670	ENSMUSG00000043872	Zmym1	5830412B09Rik|AW209050	zinc finger, MYM domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30982097-4	chr2	30981988	30982188	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144885)	promoter-TSS (NM_144885)	-147.0	NM_144885	227707.0	Mm.235238	NM_144885	ENSMUSG00000026851	BC005624	-	cDNA sequence BC005624	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-73169549-2	chr11	73169449	73169649	+	835.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_033321, intron 10 of 12)	intron (NM_033321, intron 10 of 12)	7459.0	NM_001168470	66048.0	Mm.73608	NM_025318	ENSMUSG00000047260	Emc6	0610009E20Rik|0610025L18Rik|Tmem93	ER membrane protein complex subunit 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-85109457-2	chr1	85109326	85109526	+	676.416626	f0_balb.idr|f1_balb.idr	5' UTR (NM_213615, exon 1 of 7)	5' UTR (NM_213615, exon 1 of 7)	427.0	NM_213615	381287.0	Mm.487565	NM_213615	ENSMUSG00000089844	A530032D15Rik	Gm1888	RIKEN cDNA A530032D15Rik gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-106357785-2	chr9	106357685	106357885	+	570.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10847.0	NM_153459	235584.0	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91484309-2	chr2	91484209	91484409	+	617.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172668, intron 16 of 37)	intron (NM_172668, intron 16 of 37)	26778.0	NM_001145857	228357.0	Mm.275149	NM_172668	ENSMUSG00000027253	Lrp4	6430526J12Rik|D230026E03|Megf7|mdig	low density lipoprotein receptor-related protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-124094456-2	chr14	124094356	124094556	+	743.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_207667, intron 3 of 4)	ORR1B2|LTR|ERVL-MaLR	98090.0	NM_010201	14169.0	Mm.206362	NM_010201	ENSMUSG00000025551	Fgf14	FHF-4|Fhf4|Tg(tetO-MAPT*P301L)4510Kha|mFHF-4(1B)	fibroblast growth factor 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133465307-4	chr4	133465197	133465397	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-14836.0	NM_175307	100342.0	Mm.204656	NM_175307	ENSMUSG00000046694	Fam46b	4732473B16Rik|AU045678|AU046069	family with sequence similarity 46, member B	protein-coding	4.42252050953215	3.67114825028892	3.90390828935779	4.41453028715574	5.14888948255457	5.37874406055998	4.08836057332827	5.31331127642616	1.13905464990921	0.00547456425242137	0.0715510042489668
Merged-chr10-93049643-2	chr10	93049548	93049748	+	610.0	f0_c57.idr|f1_c57bl6.idr	intron (NM_001347060, intron 5 of 67)	intron (NM_001347060, intron 5 of 67)	31948.0	NM_001347060	380654.0	Mm.34980	NM_001347060	ENSMUSG00000020014	Cfap54	4930485B16Rik|Gm872	cilia and flagella associated protein 54	protein-coding	1.45236038692785	1.31721068230017	1.59678306646081	1.22985383346717	1.17381080628104	0.785391029613512	0.972025943772543	0.763738305108646	-2.22944069447259	0.112307493947897	0.524986485345535
Merged-chr9-13749157-4	chr9	13749077	13749277	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023858)	promoter-TSS (NM_023858)	-4.0	NR_024025	77116.0	Mm.210405	NM_023858	ENSMUSG00000031918	Mtmr2	6030445P13Rik	myotubularin related protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-136071527-4	chr4	136071287	136071487	+	950.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-18016.0	NM_025919	67025.0	Mm.276856	NM_025919	ENSMUSG00000059291	Rpl11	2010203J19Rik	ribosomal protein L11	protein-coding	-2.18308165884198	-2.15547475440471	-2.16382331017202	-2.1706810624505	-2.18114370519566	-2.15366558754311	-2.03057248461154	-2.16945352807143	0.759018020146679	0.829933115115583	1
Merged-chr13-41029497-4	chr13	41029393	41029593	+	917.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145802, intron 11 of 11)	intron (NM_001145802, intron 11 of 11)	13243.0	NM_001360770	66154.0	Mm.30005	NM_025387	ENSMUSG00000021361	Tmem14c	1110021D01Rik|AU020193|HSPC194	transmembrane protein 14C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-4288794-1	chr18	4288694	4288894	+	617.0	f0_balb.idr	Intergenic	RLTR11A2|LTR|ERVK	64159.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70537315-2	chr8	70537205	70537405	+	920.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2370.0	NM_007924	13716.0	Mm.271973	NM_007924	ENSMUSG00000070002	Ell	Ell1|Men	elongation factor RNA polymerase II	protein-coding	0.746118749714083	0.153897084927888	0.146371214252982	1.15748850801743	0.295789482752824	0.37226318968046	0.148036570829095	0.141545446513205	-2.67468220553815	0.1829319004061	1
Merged-chr2-152741867-4	chr2	152741760	152741960	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5609.0	NM_001355113	15901.0	Mm.444	NM_010495	ENSMUSG00000042745	Id1	AI323524|D2Wsu140e|Idb1|bHLHb24	inhibitor of DNA binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-126046935-4	chr4	126046853	126047053	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025544)	promoter-TSS (NM_025544)	25.0	NM_025544	66407.0	Mm.195628	NM_025544	ENSMUSG00000028861	Mrps15	1500003E24Rik|2410002B11Rik|Mprs15	mitochondrial ribosomal protein S15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141638287-2	chr7	141638187	141638387	+	802.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001330001, intron 31 of 33)	intron (NM_001330001, intron 31 of 33)	17032.0	NM_001330001	353328.0	Mm.246621	NM_181729	ENSMUSG00000048191	Muc6	-	mucin 6, gastric	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56258301-2	chr17	56258201	56258401	+	637.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_010192, exon 1 of 1)	exon (NM_010192, exon 1 of 1)	1508.0	NM_010192	14154.0	Mm.290813	NM_010192	ENSMUSG00000043683	Fem1a	AW611390|Fem1aa	feminization 1 homolog a (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-41605095-4	chr10	41605002	41605202	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001358562, exon 29 of 48)	exon (NM_001358562, exon 29 of 48)	37086.0	NR_045341	70538.0	Mm.399807	NR_045341	ENSMUSG00000091370	5730435O14Rik	-	RIKEN cDNA 5730435O14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-45663729-4	chr14	45663600	45663800	+	929.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5557.0	NM_001042719	114874.0	Mm.121918	NM_176845	ENSMUSG00000037697	Ddhd1	Mir5131|PA-PLA1	DDHD domain containing 1	protein-coding	4.69613362315682	5.15426419282895	4.82284496597335	4.81368379610814	4.06062450850637	4.41239564736972	3.65843563695735	3.94760865029683	-1.06456071341088	0.005434642347158	0.0711914840677048
Merged-chr1-180434317-4	chr1	180434226	180434426	+	786.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001081227, exon 4 of 4)	3' UTR (NM_001081227, exon 4 of 4)	49178.0	NM_001081227	381310.0	Mm.44791	NM_001081227	ENSMUSG00000053963	Stum	6330403A02Rik|Gm10001|R75555	mechanosensory transduction mediator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-145123676-1	chr2	145123576	145123776	+	725.333313	f0_balb.idr	Intergenic	IAPLTR1_Mm|LTR|ERVK	-44099.0	NM_001356497	94249.0	Mm.217171	NM_053195	ENSMUSG00000063873	Slc24a3	NCKX3	solute carrier family 24 (sodium/potassium/calcium exchanger), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-57501001-4	chr16	57500895	57501095	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	-48247.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99674430-3	chr7	99674369	99674569	+	938.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175316, intron 7 of 13)	intron (NM_175316, intron 7 of 13)	21340.0	NM_001252531	101488.0	Mm.11249	NM_175316	ENSMUSG00000030737	Slco2b1	AI060904|AI852653|OATP-B|Slc21a9	solute carrier organic anion transporter family, member 2b1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-26300993-3	chr2	26300854	26301054	+	734.122253	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6397.0	NM_177841	329366.0	Mm.77712	NM_177841	ENSMUSG00000048038	Ccdc187	4932418E24Rik	coiled-coil domain containing 187	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-142717569-2	chr5	142717469	142717669	+	606.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146257, intron 6 of 10)	intron (NM_146257, intron 6 of 10)	15468.0	NM_146257	243328.0	Mm.125942	NM_146257	ENSMUSG00000050822	Slc29a4	ENT4|mPMAT	solute carrier family 29 (nucleoside transporters), member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-12736945-2	chr10	12736845	12737045	+	635.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011682, intron 11 of 73)	intron (NM_011682, intron 11 of 73)	124790.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-18047999-3	chr2	18047882	18048082	+	880.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_028317, exon 1 of 1)	exon (NM_028317, exon 1 of 1)	467.0	NM_028317	72668.0	Mm.102183	NM_028317	ENSMUSG00000054074	Skida1	2810030E01Rik|5730507N06Rik|BB088113|DLN-1	SKI/DACH domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167698640-2	chr2	167698540	167698740	+	947.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	7463.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-48655788-4	chr13	48655647	48655847	+	734.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7289.0	NM_007526	12022.0	Mm.42241	NM_007526	ENSMUSG00000021381	Barx1	-	BarH-like homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-86437592-4	chr1	86437463	86437663	+	943.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11234.0	NM_027966	71863.0	Mm.179627	NM_027966	ENSMUSG00000036574	Tex44	1700019O17Rik	testis expressed 44	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-51470985-4	chr18	51470876	51471076	+	890.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	353078.0	NM_001081224	71373.0	Mm.63546	NM_001081224	ENSMUSG00000073565	Prr16	5430406M13Rik|AI607429	proline rich 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-17065335-4	chr2	17065220	17065420	+	917.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPLTR3-int|LTR|ERVK	-51594.0	NR_040632	75069.0	Mm.50378	NR_040632		4930515L03Rik	-	RIKEN cDNA 4930515L03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67003130-11	chr10	67003027	67003227	+	922.939392	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1948.0	NR_110511	102634101.0	Mm.445258	NR_110511	ENSMUSG00000112925	Gm31763	-	predicted gene, 31763	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-73177713-4	chr11	73177609	73177809	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025318)	promoter-TSS (NM_025318)	626.0	NM_029564	76281.0	Mm.371656	NM_029564	ENSMUSG00000040158	Tax1bp3	1300011C24Rik|TIP-1	Tax1 (human T cell leukemia virus type I) binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80676534-4	chr10	80676378	80676578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021462)	promoter-TSS (NM_021462)	-185.0	NM_021462	17347.0	Mm.42126	NM_021462	ENSMUSG00000020190	Mknk2	2010016G11Rik|Gprk7|Mnk2	MAP kinase-interacting serine/threonine kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-78882567-4	chr17	78882465	78882665	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011163)	promoter-TSS (NM_011163)	7.0	NM_011163	19106.0	Mm.378990	NM_011163	ENSMUSG00000024079	Eif2ak2	2310047A08Rik|4732414G15Rik|AI467567|AI747578|Pkr|Prkr|Tik	eukaryotic translation initiation factor 2-alpha kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-181496266-8	chr2	181496168	181496368	+	949.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291201)	promoter-TSS (NM_001291201)	-874.0	NM_001291203	66314.0	Mm.136648	NM_025482	ENSMUSG00000000827	Tpd52l2	2810411G23Rik|AU016537|C86069|D54	tumor protein D52-like 2	protein-coding	1.40380773536122	0.702580666113779	0.684832074052557	2.15821283053303	1.1766491554567	0.706506775927357	1.78959748698761	0.673231431016299	-0.712325982547089	0.641425695001504	0.982599433509505
Merged-chr5-8051620-3	chr5	8051525	8051725	+	718.527771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025618, intron 1 of 7)	ID2|SINE|ID	-4917.0	NM_001080974	109552.0	Mm.96211	NM_025618	ENSMUSG00000003161	Sri	2210417O06Rik|2900070H08Rik|Sor	sorcin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-71327302-4	chr2	71327198	71327398	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172436, intron 4 of 17)	intron (NM_172436, intron 4 of 17)	40256.0	NM_172436	78830.0	Mm.30928	NM_172436	ENSMUSG00000027010	Slc25a12	2610002D09Rik|AI839531|B230107K20Rik|BB129864	solute carrier family 25 (mitochondrial carrier, Aralar), member 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-111960637-2	chr10	111960537	111960737	+	807.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-12058.0	NM_178610	52705.0	Mm.34606	NM_178610	ENSMUSG00000063334	Krr1	2610511F02Rik|AI255219|AI428520|D10Ertd773e|Hrb2	KRR1, small subunit (SSU) processome component, homolog (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45526944-4	chr7	45526873	45527073	+	995.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008654)	promoter-TSS (NM_008654)	643.0	NM_148927	69217.0	Mm.274158	NM_148927	ENSMUSG00000040428	Plekha4	2410005C22Rik|C88169|Pepp1	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-13054405-4	chr7	13054282	13054482	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145819, intron 1 of 5)	CpG	382.0	NM_001290452	109889.0	Mm.10103	NM_145819	ENSMUSG00000030380	Mzf1	Mzf-2|Mzf2|Zfp121|Zfp98|Znf42	myeloid zinc finger 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-81762903-4	chr7	81762792	81762992	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025997)	promoter-TSS (NM_025997)	-61.0	NM_025997	67148.0	Mm.241472	NM_025997	ENSMUSG00000038646	Fam103a1	2410047I02Rik|2610204K14Rik|RAM	family with sequence similarity 103, member A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-173346263-1	chr2	173346163	173346363	+	544.0	f1_c57bl6.idr	Intergenic	Intergenic	-69730.0	NM_022995	65112.0	Mm.73682	NM_022995	ENSMUSG00000038400	Pmepa1	2210418I02Rik|AW455466|Erg1.2|N4wbp4|Stag1|Tmepai	prostate transmembrane protein, androgen induced 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-184053264-2	chr1	184053164	184053364	+	732.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_022019, intron 2 of 3)	intron (NM_022019, intron 2 of 3)	18883.0	NM_022019	63953.0	Mm.404024	NM_022019	ENSMUSG00000039384	Dusp10	2610306G15Rik|AI158871|MKP-5|MKP5	dual specificity phosphatase 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6530604-2	chr19	6530504	6530704	+	551.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_020253, intron 22 of 22)	intron (NM_020253, intron 22 of 22)	12466.0	NM_009203	20521.0	Mm.391146	NM_009203	ENSMUSG00000061742	Slc22a12	AI987855|OAT4L|Rst|Slc22al2|URAT1	solute carrier family 22 (organic anion/cation transporter), member 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-66817024-4	chr1	66816934	66817134	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357156, intron 1 of 14)	CpG	561.0	NM_177645	68691.0	Mm.240912	NM_177645	ENSMUSG00000026004	Kansl1l	1110028C15Rik|1190030G24|AI427598|C430010P07Rik|mKIAA4189	KAT8 regulatory NSL complex subunit 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-88729998-2	chr10	88729898	88730098	+	715.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001037166, exon 1 of 1)	3' UTR (NM_001037166, exon 1 of 1)	1103.0	NM_001037166	237433.0	Mm.478763	NM_001037166		Gm4925	EG237433	predicted gene 4925	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-111798992-1	chr13	111798892	111799092	+	649.0	f1_c57bl6.idr	intron (NM_011945, intron 1 of 19)	intron (NM_011945, intron 1 of 19)	10001.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	1.36385234593259	2.17647365022881	2.10092512862542	2.42882481887938	2.23930310945144	2.42241125104189	1.66960913874655	1.19664138479012	-0.250076787997834	0.809683623082375	0.998431161219273
Merged-chr1-132194905-4	chr1	132194801	132195001	+	645.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033250, intron 1 of 3)	intron (NM_001033250, intron 1 of 3)	-3187.0	NR_029777	723818.0		NR_029777	ENSMUSG00000065435	Mir135b	Mirn135b|mir-135b	microRNA 135b	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27720554-2	chr2	27720454	27720654	+	639.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290482, intron 1 of 9)	intron (NM_001290482, intron 1 of 9)	9971.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-74001307-1	chr13	74001207	74001407	+	594.0	f0_balb.idr	Intergenic	Intergenic	-8112.0	NM_182839	72948.0	Mm.39752	NM_182839	ENSMUSG00000021573	Tppp	2900041A09Rik|AI849835	tubulin polymerization promoting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21367659-4	chr9	21367531	21367731	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010561)	promoter-TSS (NM_010561)	-240.0	NM_001042708	16201.0	Mm.440026	NM_010561	ENSMUSG00000032178	Ilf3	MBII-26|MPHOSPH4|NF90|NFAR	interleukin enhancer binding factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-4535674-2	chr11	4535574	4535774	+	634.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028860, intron 1 of 17)	intron (NM_028860, intron 1 of 17)	59141.0	NM_028860	74302.0	Mm.425669	NM_028860	ENSMUSG00000034354	Mtmr3	1700092A20Rik|AI255150|AW557713|FYVE-DSP1|ZFYVE10|mKIAA0371	myotubularin related protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-99270599-4	chr10	99270502	99270702	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7371.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-6983884-1	chr10	6983784	6983984	+	542.0	f0_balb.idr	intron (NM_001039652, intron 4 of 5)	MTE2a|LTR|ERVL-MaLR	-3419.0	NM_001170801	320495.0	Mm.331674	NM_001033391	ENSMUSG00000064065	Ipcef1	A130090K04Rik	interaction protein for cytohesin exchange factors 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-6267764-4	chr2	6267652	6267852	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040333, intron 3 of 6)	intron (NR_040333, intron 3 of 6)	-54758.0	NM_024208	67856.0	Mm.38342	NM_024208	ENSMUSG00000039063	Echdc3	2310005D12Rik|AI662097	enoyl Coenzyme A hydratase domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5788257-2	chr19	5788157	5788357	+	587.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	7724.0	NR_144621	109146451.0		NR_144621		Mascrna	-	Malat1-associated small cytoplasmic RNA	scRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107306316-1	chr9	107306216	107306416	+	579.0	f1_balb.idr	Intergenic	Intergenic	9657.0	NM_001317354	12700.0	Mm.4592	NM_009895	ENSMUSG00000032578	Cish	CIS-1|CIS1|Cis|F17|F23|SOCS	cytokine inducible SH2-containing protein	protein-coding	1.69515119474486	0.795105637932778	0.779967598779714	1.14289524608575	1.54519638167771	1.23130495858801	1.88660320256716	0.770148850064166	0.909947388281707	0.525344874383769	0.948340152465298
Merged-chr4-148900791-6	chr4	148900618	148900818	+	805.430542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027195, intron 3 of 15)	CpG	51604.0	NR_154553	108168987.0	Mm.393596	NR_154553		Gm13205	AA408865	predicted gene 13205	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-115524697-2	chr6	115524622	115524822	+	561.0	f0_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19982.0	NM_199033	381802.0	Mm.291208	NM_199033	ENSMUSG00000042389	Tsen2	AU067695	tRNA splicing endonuclease subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80299724-4	chr7	80299619	80299819	+	882.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145150, intron 1 of 13)	intron (NM_145150, intron 1 of 13)	5268.0	NM_001285998	233406.0	Mm.227274	NM_145150	ENSMUSG00000038943	Prc1	D7Ertd348e	protein regulator of cytokinesis 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-114395184-2	chr6	114395084	114395284	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MamTip2|DNA|hAT-Tip100	-2752.0	NM_001317125	15465.0	Mm.333327	NM_008285	ENSMUSG00000053004	Hrh1	Bphs|H1R|HH1R|Hir	histamine receptor H1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-77033480-2	chr16	77033380	77033580	+	658.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013918, intron 1 of 23)	intron (NM_013918, intron 1 of 23)	19411.0	NM_013918	30940.0	Mm.40986	NM_013918	ENSMUSG00000022867	Usp25	-	ubiquitin specific peptidase 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-69415710-4	chr18	69415659	69415859	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 3 of 19)	intron (NM_001361128, intron 3 of 19)	69599.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-26883934-3	chr8	26883846	26884046	+	909.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59523.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-86743228-2	chr3	86743128	86743328	+	822.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077687, intron 50 of 50)	intron (NM_001077687, intron 50 of 50)	177656.0	NM_001195499	70762.0	Mm.44490	NM_027539	ENSMUSG00000028078	Dclk2	6330415M09Rik|AU044875|CL2|CLICK2|Click-II|Dcamkl2	doublecortin-like kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-135188770-1	chr6	135188670	135188870	+	974.0	f1_c57bl6.idr	intron (NR_040296, intron 1 of 4)	B4A|SINE|B4	290.0	NR_040296	100502888.0	Mm.437844	NR_040296	ENSMUSG00000108239	Gm19434	-	predicted gene, 19434	ncRNA	3.77515481210059	2.32348414767473	3.83441837956559	2.16100540588133	2.91448303752751	1.87131756177149	4.01086001706427	1.97190358338572	-0.391052813821148	0.634887491819944	0.982417279970648
Merged-chr6-92822805-2	chr6	92822705	92822905	+	707.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175314, intron 19 of 29)	ORR1D2|LTR|ERVL-MaLR	78636.0	NM_175314	101401.0	Mm.158235	NM_175314	ENSMUSG00000030022	Adamts9	1810011L16Rik|8430403M15Rik|AW743315|E030027K14Rik	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-59442599-2	chr4	59442499	59442699	+	663.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3966.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	-0.920746059108256	-0.900210136228289	-0.910868657888965	-0.914546390428102	-0.919816208124075	0.187426340199569	-0.909824961773136	-0.913900867410677	3.55267203040657	0.234146038776258	1
Merged-chr11-70687196-4	chr11	70687097	70687297	+	950.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001190379, intron 1 of 20)	intron (NM_001190379, intron 1 of 20)	908.0	NM_001190376	216874.0	Mm.473726	NM_178116	ENSMUSG00000040712	Camta2	Kiaa0909-hp|mKIAA0909	calmodulin binding transcription activator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-33975088-2	chr2	33974988	33975188	+	694.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-87142.0	NM_175184	72543.0	Mm.254914	NM_175184	ENSMUSG00000038740	Mvb12b	2610200O14Rik|2610528K11Rik|AI414895|Fam125b	multivesicular body subunit 12B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-176836849-4	chr1	176836775	176836975	+	886.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_037996)	promoter-TSS (NR_037996)	-742.0	NR_037996	15365.0	Mm.441435	NR_037996		Hmga2-ps1	EG666235|Gm7996|Hmgic-ps1|[y]i-c	high mobility group AT-hook 2, pseudogene 1	pseudo	1.8281191702824	1.31473927723187	1.41567492512098	1.08376653264571	1.19321093785404	1.61071275341637	1.28252370875212	1.08786906230016	-0.54171393678474	0.652544500131844	0.986434615290108
Merged-chr6-66964452-2	chr6	66964352	66964552	+	772.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177560, intron 3 of 4)	intron (NM_001177560, intron 3 of 4)	67561.0	NM_001177558	14701.0	Mm.234342	NM_025278	ENSMUSG00000036402	Gng12	2010305F15Rik|AA536815|AI115529|AI314170|AI842738	guanine nucleotide binding protein (G protein), gamma 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85498039-4	chr12	85497939	85498139	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24149.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-93539960-4	chr10	93539868	93540068	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027908)	promoter-TSS (NM_027908)	65.0	NM_027908	71761.0	Mm.244518	NM_027908	ENSMUSG00000015890	Amdhd1	1300019J08Rik	amidohydrolase domain containing 1	protein-coding	3.19073303619205	3.41379356854388	3.12178545301759	4.00593763640331	2.89821433219405	3.15197611998135	1.92681712409035	2.5933957051421	-1.30107343459291	0.0489134172463598	0.322216240916082
Merged-chr17-26123442-4	chr17	26123356	26123556	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024227)	promoter-TSS (NM_024227)	-47.0	NM_024227	68611.0	Mm.273102	NM_024227	ENSMUSG00000024181	Mrpl28	1110015G04Rik|L28mt|MAAT1|MRP-L28|p15	mitochondrial ribosomal protein L28	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-43492846-4	chr13	43492750	43492950	+	829.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-11877.0	NM_019930	56705.0	Mm.148781	NM_019930	ENSMUSG00000038546	Ranbp9	IBAP-1|Ibap1|RanBPM	RAN binding protein 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-59420520-2	chr1	59420419	59420619	+	623.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-61628.0	NM_008057	14369.0	Mm.297906	NM_008057	ENSMUSG00000041075	Fzd7	Fz7	frizzled class receptor 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-120518916-2	chr5	120518816	120519016	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177595, intron 2 of 13)	B1_Mus1|SINE|Alu	7724.0	NM_001177594	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-13377452-2	chr13	13377352	13377552	+	986.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_031999, intron 1 of 6)	intron (NM_031999, intron 1 of 6)	16172.0	NM_031999	83924.0	Mm.379269	NM_031999	ENSMUSG00000021306	Gpr137b	AI788917|AU016435|AW546472|C730041E01|C80550|C80741|D13Abb1e|Tm7sf1	G protein-coupled receptor 137B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-57355350-1	chr18	57355250	57355450	+	814.0	f0_c57.idr	intron (NM_028447, intron 1 of 8)	intron (NM_028447, intron 1 of 8)	617.0	NM_028447	73137.0	Mm.29889	NM_028447	ENSMUSG00000024594	Prrc1	1190002C06Rik|2310058D16Rik|3110038B19Rik|9430085A19Rik	proline-rich coiled-coil 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-42473605-2	chr9	42473505	42473705	+	695.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1347.0	NM_173038	272589.0	Mm.34483	NM_173038	ENSMUSG00000037287	Tbcel	D330014K23|E130107N23Rik|Lrrc35	tubulin folding cofactor E-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-93625190-1	chr7	93625090	93625290	+	668.0	f1_balb.idr	Intergenic	Lx|LINE|L1	-441014.0	NM_001358087	100040298.0	Mm.260904	NM_001358087		Gm15501	EyeLinc5	predicted pseudogene 15501	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-67811373-1	chr14	67811273	67811473	+	652.666687	f0_c57.idr	intron (NM_177780, intron 21 of 51)	intron (NM_177780, intron 21 of 51)	48372.0	NR_105857	102465310.0		NR_105857	ENSMUSG00000098866	Mir6539	Gm27464|mir-6539|mmu-mir-6539	microRNA 6539	ncRNA	1.82416337764032	3.52692763582973	2.64323870317058	2.08829114596574	1.66715426469124	2.40134766335404	2.44450989044428	1.5376367756449	-1.30351573808922	0.148743036372173	0.599939136169878
Merged-chr2-26928346-3	chr2	26928253	26928453	+	726.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011512, intron 1 of 5)	intron (NM_011512, intron 1 of 5)	5158.0	NM_011512	20932.0	Mm.300594	NM_011512	ENSMUSG00000014867	Surf4	AL033340|AL033373|Surf-4	surfeit gene 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-83328681-1	chr13	83328581	83328781	+	547.0	f1_balb.idr	Intergenic	Intergenic	-175353.0	NM_001347572	17260.0	Mm.24001	NM_025282	ENSMUSG00000005583	Mef2c	5430401D19Rik|9930028G15Rik|AV011172|Mef2	myocyte enhancer factor 2C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-96968568-2	chr11	96968468	96968668	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030220, intron 1 of 6)	intron (NM_030220, intron 1 of 6)	9120.0	NM_030220	78912.0	Mm.491183	NM_030220	ENSMUSG00000018678	Sp2	4930480I16Rik|mKIAA0048	Sp2 transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-66881930-4	chr10	66881806	66882006	+	703.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38478.0	NR_138560	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-35378089-2	chr8	35377989	35378189	+	553.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177741, intron 1 of 1)	intron (NM_177741, intron 1 of 1)	2348.0	NM_177741	244416.0	Mm.247126	NM_177741	ENSMUSG00000046794	Ppp1r3b	6430576E21|AW821953|GL|PTG	protein phosphatase 1, regulatory (inhibitor) subunit 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-121255127-4	chr5	121255021	121255221	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181421, intron 2 of 75)	intron (NM_181421, intron 2 of 75)	34902.0	NM_181421	269700.0	Mm.184589	NM_181421	ENSMUSG00000042744	Hectd4	A130010L24|AU042671|BC019639|EG545802|Gm15800|mKIAA0614	HECT domain E3 ubiquitin protein ligase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-161109171-4	chr2	161109073	161109273	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173368)	promoter-TSS (NM_173368)	-87.0	NR_126509	71389.0	Mm.122738	NM_173368	ENSMUSG00000057133	Chd6	5430439G14Rik|6330406J24Rik|CHD-6	chromodomain helicase DNA binding protein 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-30769424-4	chr13	30769316	30769516	+	980.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	20183.0	NM_013674	16364.0	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-39523920-4	chr7	39523906	39524106	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004139, intron 1 of 3)	intron (NM_001004139, intron 1 of 3)	6240.0	NM_001004139	70227.0	Mm.333800	NM_001004139	ENSMUSG00000068959	Zfp619	3000002G13Rik	zinc finger protein 619	protein-coding	3.96351391303748	4.35584621997689	4.16592843834329	3.87706086112001	3.43196636677894	3.57141641866867	3.63818592619205	4.37202652293257	-0.400161363989425	0.396133081683511	0.883276804275027
Merged-chr2-33847646-3	chr2	33847554	33847754	+	692.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175184, intron 2 of 9)	L1MB7|LINE|L1	40292.0	NM_175184	72543.0	Mm.254914	NM_175184	ENSMUSG00000038740	Mvb12b	2610200O14Rik|2610528K11Rik|AI414895|Fam125b	multivesicular body subunit 12B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-116423628-2	chr2	116423528	116423728	+	587.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-347532.0	NR_033447	69974.0	Mm.440293	NR_033447		2810405F15Rik	-	RIKEN cDNA 2810405F15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-10551120-3	chr10	10551025	10551225	+	830.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026405, intron 1 of 2)	intron (NM_026405, intron 1 of 2)	7082.0	NM_026405	67844.0	Mm.31486	NM_026405	ENSMUSG00000019832	Rab32	2810011A17Rik|AU022057	RAB32, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-78520776-2	chr10	78520676	78520876	+	669.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53724.0	NM_173751	216136.0	Mm.2644	NM_173751	ENSMUSG00000032763	Ilvbl	5830463I21|AI415009	ilvB (bacterial acetolactate synthase)-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-38710381-4	chr15	38710290	38710490	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18126.0	NR_131206	105463124.0	Mm.432448	NR_131206	ENSMUSG00000115620	Gm45924	Borg	predicted gene, 45924	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-152476759-2	chr4	152476659	152476859	+	769.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355738)	promoter-TSS (NM_001355738)	53.0	NM_001355738	260305.0	Mm.302496	NM_153424	ENSMUSG00000039577	Nphp4	4930564O18Rik|nmf192	nephronophthisis 4 (juvenile) homolog (human)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-99266508-4	chr5	99266407	99266607	+	952.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13580.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	2.17296332951605	3.0372820949358	1.18674373345512	1.79160783032288	1.9780284352118	2.36407763899582	2.27978735421315	1.16512231013758	-0.484297684680674	0.649435348908411	0.985422869512088
Merged-chr13-52593329-2	chr13	52593229	52593429	+	597.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001198977, intron 1 of 13)	ORR1A3|LTR|ERVL-MaLR	-3553.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-85813696-2	chr11	85813596	85813796	+	908.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_077059, intron 1 of 4)	intron (NR_077059, intron 1 of 4)	18692.0	NR_077059	69909.0	Mm.440214	NR_077059	ENSMUSG00000087013	2610027K06Rik	-	RIKEN cDNA 2610027K06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-88810293-3	chr13	88810188	88810388	+	965.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11184.0	NM_010103	13612.0	Mm.125580	NM_010103	ENSMUSG00000034488	Edil3	Del-1|Del1|Sox2-cre|Sox2Cre|Tg(Sox2-cre)1Amc	EGF-like repeats and discoidin I-like domains 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-87993003-4	chr6	87992911	87993111	+	978.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11328.0	NR_026990	434064.0	Mm.371796	NR_026990	ENSMUSG00000084950	Gm5577	EG434064	predicted gene 5577	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-43722886-4	chr2	43722774	43722974	+	864.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25950.0	NM_001301832	76117.0	Mm.217350	NM_153820	ENSMUSG00000049744	Arhgap15	5830480G12Rik	Rho GTPase activating protein 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-89285912-2	chr6	89285812	89286012	+	921.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_131021)	promoter-TSS (NR_131021)	-187.0	NR_131021	75131.0	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	Gm44205	RIKEN cDNA 4930512J16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-94236865-3	chr9	94236759	94236959	+	648.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	301222.0	NM_001033145	68861.0	Mm.258746	NM_001033145	ENSMUSG00000045414	1190002N15Rik	GoPro49|HASF	RIKEN cDNA 1190002N15 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-46846418-4	chr7	46846324	46846524	+	970.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001136069)	promoter-TSS (NM_001136069)	620.0	NR_102727	16828.0	Mm.29324	NM_010699	ENSMUSG00000063229	Ldha	Ldh1|Ldhm|l7R2	lactate dehydrogenase A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-184034349-4	chr1	184034225	184034425	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028516)	promoter-TSS (NM_028516)	-56.0	NM_022019	63953.0	Mm.404024	NM_022019	ENSMUSG00000039384	Dusp10	2610306G15Rik|AI158871|MKP-5|MKP5	dual specificity phosphatase 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-71310600-2	chr12	71310500	71310700	+	715.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001190466, intron 1 of 3)	intron (NM_001190466, intron 1 of 3)	716.0	NM_001190466	59036.0	Mm.46662	NM_021532	ENSMUSG00000044548	Dact1	4921528D17Rik|AI115603|DAPPER|DAPPER1|FRODO|Frd1|Frodo1|MDpr1|MTNG3|THYEX3	dishevelled-binding antagonist of beta-catenin 1	protein-coding	1.38835999706933	0.938196104857494	0.720821656107007	1.28403516942317	1.40208712405199	0.944177994120835	0.723192936753966	1.29168747250865	0.036576193933453	0.979798849274951	0.998431161219273
Merged-chr9-45290771-2	chr9	45290671	45290871	+	557.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-21622.0	NM_001324486	16154.0	Mm.379327	NM_008348	ENSMUSG00000032089	Il10ra	AW553859|CDw210|CDw210a|IL-10R1|IL-10RA|Il10r|mIL-10R	interleukin 10 receptor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-30718746-1	chr14	30718646	30718846	+	591.0	f1_balb.idr	intron (NM_001166532, intron 1 of 20)	Lx3A|LINE|L1	3131.0	NM_001166532	54650.0	Mm.294662	NM_019460	ENSMUSG00000006527	Sfmbt1	4930442N21Rik|9330180L21Rik|AA536974|Sfmbt|Smr	Scm-like with four mbt domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-86149988-2	chr4	86149888	86150088	+	975.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029967, intron 3 of 27)	L1Md_F2|LINE|L1	96073.0	NM_029967	77739.0	Mm.331690	NM_029967	ENSMUSG00000066113	Adamtsl1	5930437A14Rik|6720426B09Rik|ADAMTSL-1	ADAMTS-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-134060993-4	chr1	134060908	134061108	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18147.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-128754160-6	chr6	128754090	128754290	+	712.930542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31144.0	NM_001099918	100043861.0	Mm.66911	NM_001099918	ENSMUSG00000079299	Klrb1	4930431A04Rik|Gm4696|Klrb1g|Klrb6|Ly-55|Ly55|NKR-P1G|Nkrp-1e|Nkrp1g	killer cell lectin-like receptor subfamily B member 1	protein-coding	0.438379819360352	0.172471613171283	0.355768196207825	0.159746536518581	0.445603637408109	0.384952716574725	1.15723104306606	0.160719861213746	2.0715078304109	0.269691912140203	1
Merged-chr13-41605324-1	chr13	41605224	41605424	+	1000.0	f0_c57.idr	promoter-TSS (NM_001163572)	promoter-TSS (NM_001163572)	-892.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44570065-2	chr7	44569965	44570165	+	544.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER4A|LTR|ERVK	-2380.0	NM_008437	16541.0	Mm.383181	NM_008437	ENSMUSG00000002204	Napsa	KAP|Kdap|NAP1|SNAPA|pronapsin	napsin A aspartic peptidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-52956110-4	chr2	52956010	52956210	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	98242.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-62118075-2	chr18	62117975	62118175	+	562.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	61906.0	NM_007420	11555.0	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-143190828-2	chr4	143190728	143190928	+	744.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001256380, intron 2 of 7)	intron (NM_001256380, intron 2 of 7)	21881.0	NM_001081355	110593.0	Mm.332020	NM_001081355	ENSMUSG00000057637	Prdm2	4833427P12Rik|E330024L24Rik|Gm1033|Gm19732|KMT8|Riz|Riz1|Znfpr1c1	PR domain containing 2, with ZNF domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166592729-3	chr2	166592633	166592833	+	858.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 17 of 39)	intron (NM_177782, intron 17 of 39)	28211.0	NR_152154	433503.0	Mm.491336	NR_152154		Gm29679	-	predicted gene, 29679	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19328019-4	chr7	19327925	19328125	+	862.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17046.0	NM_001127324	13870.0	Mm.280913	NM_007948	ENSMUSG00000003549	Ercc1	Ercc-1	excision repair cross-complementing rodent repair deficiency, complementation group 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-34128648-4	chr10	34128530	34128730	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175449)	promoter-TSS (NM_175449)	-658.0	NM_175449	215900.0	Mm.34479	NM_175449	ENSMUSG00000046031	Fam26f	A630077B13Rik|Calhm6	family with sequence similarity 26, member F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-4671949-2	chr9	4671849	4672049	+	575.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113181, intron 3 of 10)	Lx2|LINE|L1	124285.0	NM_001113180	14802.0	Mm.209263	NM_019691	ENSMUSG00000025892	Gria4	GluA4|GluR-D|Glur-4|Glur4|Gluralpha4|spkw1	glutamate receptor, ionotropic, AMPA4 (alpha 4)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-54464842-4	chr14	54464748	54464948	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022993, intron 1 of 6)	intron (NM_022993, intron 1 of 6)	701.0	NM_022993	65107.0	Mm.472719	NM_022993	ENSMUSG00000022175	Lrp10	Lrp9	low-density lipoprotein receptor-related protein 10	protein-coding	4.28969721129084	5.02934566033857	4.52954380153153	3.007535870656	4.14429144054296	3.71717596370774	3.92699532805254	4.29095201235132	-0.456839510743194	0.355092438068762	0.853659667510465
Merged-chr9-118734879-2	chr9	118734779	118734979	+	655.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 1 of 13)	intron (NM_001113514, intron 1 of 13)	23187.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-176814765-4	chr1	176814666	176814866	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_151682, exon 1 of 17)	non-coding (NR_151682, exon 1 of 17)	106.0	NM_029756	76816.0	Mm.171399	NM_029756	ENSMUSG00000026504	Sdccag8	2700048G21Rik|5730470G24Rik|Cccap	serologically defined colon cancer antigen 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83454018-4	chr6	83453910	83454110	+	981.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347313, intron 2 of 11)	intron (NM_001347313, intron 2 of 11)	2382.0	NM_001347313	194388.0	Mm.211030	NM_183138	ENSMUSG00000034832	Tet3	B430006D22Rik|BC037432|D230004J03Rik	tet methylcytosine dioxygenase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-40702231-2	chr4	40702131	40702331	+	649.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025444, intron 1 of 7)	intron (NM_001025444, intron 1 of 7)	685.0	NM_025545	66408.0	Mm.430710	NM_025545	ENSMUSG00000028411	Aptx	2410016G21Rik|AA388047|FHA-HIT	aprataxin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-116662656-4	chr3	116662556	116662756	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008246)	promoter-TSS (NM_008246)	21.0	NM_008246	15247.0	Mm.280077	NM_008246	ENSMUSG00000089911	Mfsd14a	Hiat1	major facilitator superfamily domain containing 14A	protein-coding	6.32313098701764	6.17792181090495	5.98885749884583	6.37329827954231	6.36252038676327	5.9367320415694	6.22436027985107	6.6969464115346	0.120800398605285	0.594262111728181	0.9706660979479
Merged-chr17-56273427-3	chr17	56273299	56273499	+	914.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_174989, intron 1 of 1)	intron (NM_174989, intron 1 of 1)	3368.0	NM_174989	106759.0	Mm.203952	NM_174989	ENSMUSG00000047123	Ticam1	AW046014|AW547018|TICAM-1|TRIF	toll-like receptor adaptor molecule 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-55447274-4	chr12	55447138	55447338	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45409.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-145115609-4	chr6	145115536	145115736	+	975.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001281981)	promoter-TSS (NM_001281981)	0.0	NM_001281980	16970.0	Mm.843	NM_008511	ENSMUSG00000030263	Lrmp	D6Int3|D6Int4|D6Int5|D6Int7|D6Int8|Jaw1	lymphoid-restricted membrane protein	protein-coding	4.74226319369937	5.40880878053401	5.12840871478021	5.70028886187721	4.59879442587512	4.45606619725077	3.22080200338328	4.11521257622277	-1.32877138187489	0.000848800658790164	0.0169075515062705
Merged-chr5-121917765-3	chr5	121917664	121917864	+	901.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007804, intron 4 of 22)	intron (NM_007804, intron 4 of 22)	68767.0	NM_001359949	231717.0	Mm.12654	NM_175474	ENSMUSG00000044134	Fam109a	A230106M15Rik|AU017694|IPIP27A|Ses1	family with sequence similarity 109, member A	protein-coding	3.67033067621344	3.43241466540461	1.58970927568141	1.81782772850514	3.95961312673878	3.16307061211583	3.42480219840893	3.39501600386203	0.901681006970489	0.23511255521479	0.731386965587429
Merged-chr11-75596767-4	chr11	75596717	75596917	+	677.641663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008850, intron 2 of 11)	B1_Mur2|SINE|Alu	3414.0	NR_110477	654359.0	Mm.439961	NR_110477		Gm12338	-	cytochrome c oxidase, subunit VIIc pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-73762350-2	chr13	73762250	73762450	+	576.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1310.0	NM_001360694	20499.0	Mm.275800	NM_011390	ENSMUSG00000017756	Slc12a7	AA408796|D13Ertd261e|Kcc4	solute carrier family 12, member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-100687235-4	chr15	100687143	100687343	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033612, intron 1 of 7)	intron (NM_033612, intron 1 of 7)	677.0	NM_033612	109901.0	Mm.2131	NM_033612	ENSMUSG00000023031	Cela1	1810009A17Rik|1810062B19Rik|Ela-1|Ela1|PC-TsF	chymotrypsin-like elastase family, member 1	protein-coding	4.11658460756561	4.0614973832181	2.73392378523257	3.0155172657658	3.06687322846369	2.8588158331741	2.42712850933665	3.79366770111729	-0.751166572715877	0.24834604547944	0.74758343357745
Merged-chr2-91137519-2	chr2	91137419	91137619	+	685.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001177720, exon 35 of 35)	3' UTR (NM_001177720, exon 35 of 35)	19375.0	NM_008653	17868.0	Mm.10728	NM_008653	ENSMUSG00000002100	Mybpc3	-	myosin binding protein C, cardiac	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-111554788-4	chr9	111554680	111554880	+	975.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	115699.0	NM_172928	245038.0	Mm.26361	NM_172928	ENSMUSG00000032500	Dclk3	BC056929|C730036H08|Dcamkl3	doublecortin-like kinase 3	protein-coding	5.03491708330331	4.95195897038079	5.57922486059623	5.0861043772667	4.48341094677727	4.57131226858171	5.66316890556523	4.40322432245779	-0.355652363323624	0.340866681345301	0.841759509021393
Merged-chr7-102441193-1	chr7	102441093	102441293	+	595.0	f1_balb.idr	promoter-TSS (NM_009103)	promoter-TSS (NM_009103)	-502.0	NM_009103	20133.0	Mm.197486	NM_009103	ENSMUSG00000030978	Rrm1	RnrM1	ribonucleotide reductase M1	protein-coding	-0.526013669879176	-0.506570074325994	-0.512832815432019	-0.517734824004051	-0.337035688571471	-0.505172136012157	-0.511442827915966	0.757010881314994	3.9881778709374	0.10916899983468	1
Merged-chr1-120293977-4	chr1	120293885	120294085	+	916.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-22903.0	NM_001085409	68428.0	Mm.181033	NM_133186	ENSMUSG00000026389	Steap3	1010001D01Rik|Tsap6|pHyde	STEAP family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-103796007-4	chr2	103795937	103796137	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111292, intron 1 of 16)	intron (NM_001111292, intron 1 of 16)	1041.0	NM_001111290	53872.0	Mm.427589	NM_016739	ENSMUSG00000027184	Caprin1	AL022980|Caprin-1|Gpiap|Gpiap1|Mmgpip137|P137|rng105	cell cycle associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-75906990-2	chr16	75906890	75907090	+	778.93335	f1_balb.idr|f1_c57bl6.idr	intron (NM_023380, intron 1 of 7)	intron (NM_023380, intron 1 of 7)	2276.0	NM_023380	67742.0	Mm.131406	NM_023380	ENSMUSG00000022876	Samsn1	4930571B16Rik|930571B16Rik|Hacs1|SLy2	SAM domain, SH3 domain and nuclear localization signals, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-24981038-2	chr2	24980938	24981138	+	596.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_146251, intron 4 of 34)	intron (NM_146251, intron 4 of 34)	5005.0	NM_146251	241274.0	Mm.389243	NM_146251	ENSMUSG00000036833	Pnpla7	BC027342|E430013P11Rik|Nre	patatin-like phospholipase domain containing 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-63911481-4	chr7	63911405	63911605	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021366, intron 1 of 1)	intron (NM_021366, intron 1 of 1)	-5352.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	4.88548972567945	5.29552330965771	5.11132586613144	3.44126047941068	4.46956623710016	4.24363234884785	4.93279592056529	4.49820735087035	-0.345209883992803	0.4213963478922	0.900322118218157
Merged-chr6-5211877-4	chr6	5211776	5211976	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17930.0	NM_011134	18979.0	Mm.237657	NM_011134	ENSMUSG00000002588	Pon1	Pon	paraoxonase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-18716569-4	chr19	18716475	18716675	+	825.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177640, intron 1 of 1)	B3|SINE|B2	3339.0	NM_177640	225995.0	Mm.28101	NM_177640	ENSMUSG00000047044	D030056L22Rik	-	RIKEN cDNA D030056L22 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-88237565-2	chr1	88237465	88237665	+	906.416626	f1_balb.idr|f1_c57bl6.idr	exon (NM_001281466, exon 13 of 42)	exon (NM_001281466, exon 13 of 42)	10545.0	NM_001281466	100040766.0	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	Heatr7b1	maestro heat-like repeat family member 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-72874453-3	chr15	72874319	72874519	+	833.044434	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164642, intron 16 of 16)	intron (NM_001164642, intron 16 of 16)	-64095.0	NR_002864	353342.0	Mm.440245	NR_002864	ENSMUSG00000106847	Peg13	-	paternally expressed 13	ncRNA	0.93768959438112	1.02383670189253	1.41653278652866	1.25705738454794	0.781362852007338	1.35462054061225	1.42895460313826	1.3802136817948	0.382564485956969	0.772863785003343	0.998431161219273
Merged-chr14-54735223-3	chr14	54735100	54735300	+	933.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016972, intron 5 of 10)	intron (NM_016972, intron 5 of 10)	-23026.0	NM_207131	110794.0	Mm.236223	NM_207131	ENSMUSG00000052435	Cebpe	C/EBPe|C/EBPepsilon|CRP1|Gm294	CCAAT/enhancer binding protein (C/EBP), epsilon	protein-coding	3.03867532892539	3.39842661425756	2.28650781845984	2.75683182017353	3.1325352499683	3.42252947299763	2.61400060448879	2.23270795826494	-0.00171739087861356	0.998069267023529	0.999477195380955
Merged-chr8-62682802-2	chr8	62682702	62682902	+	679.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	-268430.0	NM_001252620	72902.0	Mm.334552	NM_023689	ENSMUSG00000054162	Spock3	2900045C01Rik|AI428471|mKIAA4039	sparc/osteonectin, cwcv and kazal-like domains proteoglycan 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-108344349-6	chr9	108344282	108344482	+	920.4722289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3449.0	NM_001311157	22258.0	Mm.3974	NM_011678	ENSMUSG00000032612	Usp4	F730026I20Rik|Unp|mKIAA4155	ubiquitin specific peptidase 4 (proto-oncogene)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133495994-1	chr4	133495894	133496094	+	721.5	f1_balb.idr	intron (NM_001081156, intron 1 of 1)	intron (NM_001081156, intron 1 of 1)	2556.0	NM_001081156	69539.0	Mm.151594	NM_001081156	ENSMUSG00000056596	Trnp1	2300002D11Rik|Trnp	TMF1-regulated nuclear protein 1	protein-coding	1.75916491387706	0.644247529559117	2.36238555341644	0.600604065880857	0.571696632360914	2.25461999861076	0.625508786250123	0.604061722205316	-0.710574386039345	0.827905696025229	0.998431161219273
Merged-chr2-167689877-6	chr2	167689815	167690015	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_110334)	promoter-TSS (NR_110334)	-844.0	NR_110334	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-4705140-2	chr11	4705040	4705240	+	792.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_197979)	promoter-TSS (NM_197979)	484.0	NM_001356390	67178.0	Mm.271056	NM_026015	ENSMUSG00000009076	Zmat5	2610510L01Rik|D11Bwg0572e|D11Bwg1548e	zinc finger, matrin type 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-96645518-2	chr10	96645418	96645618	+	624.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28517.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-154961052-2	chr4	154960952	154961152	+	707.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010419, intron 1 of 2)	CpG	129.0	NM_010419	15208.0	Mm.137268	NM_010419	ENSMUSG00000048001	Hes5	bHLHb38	hes family bHLH transcription factor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97523325-4	chr6	97523228	97523428	+	965.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	-35508.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	3.48714727062387	3.36597393950035	3.78451156457338	4.38064969262386	4.32482793757274	3.27267135531456	2.3391357865817	4.6945525752199	0.191443515972953	0.752655876415523	0.998431161219273
Merged-chr8-71404986-4	chr8	71404903	71405103	+	880.595825	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_026636)	TTS (NM_026636)	-1009.0	NM_001310502	234396.0	Mm.216549	NM_172756	ENSMUSG00000046295	Ankle1	8430438L13Rik|Ankrd41|C430003I23|Lem3	ankyrin repeat and LEM domain containing 1	protein-coding	1.29386619622017	2.56534565123473	1.20082536345146	1.54418074730391	1.30573602924388	1.25353855673972	0.942194256505782	2.6647270518403	-0.0628669370455	0.957829782682048	0.998431161219273
Merged-chr10-63236024-4	chr10	63235923	63236123	+	866.8875119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	-7774.0	NM_030114	67345.0	Mm.234437	NM_026101	ENSMUSG00000020064	Herc4	1700056O17Rik|4921531D01Rik|9530080M15Rik|mKIAA1593	hect domain and RLD 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-83977021-2	chr8	83976921	83977121	+	713.5	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001277898, exon 1 of 10)	5' UTR (NM_001277898, exon 1 of 10)	138.0	NM_001277898	18747.0	Mm.19111	NM_008854	ENSMUSG00000005469	Prkaca	PKCD|Pkaca	protein kinase, cAMP dependent, catalytic, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-92988740-3	chr6	92988643	92988843	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015530, intron 1 of 2)	intron (NR_015530, intron 1 of 2)	48161.0	NR_015530	330385.0	Mm.483472	NR_015530	ENSMUSG00000097462	9530026P05Rik	B430306B02	RIKEN cDNA 9530026P05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-99299066-2	chr14	99298966	99299166	+	935.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_009769, exon 1 of 4)	exon (NM_009769, exon 1 of 4)	375.0	NM_009769	12224.0	Mm.30262	NM_009769	ENSMUSG00000005148	Klf5	4930520J07Rik|Bteb2|CKLF|IKLF	Kruppel-like factor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-46984060-3	chr13	46983976	46984176	+	659.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	30774.0	NM_175340	105193.0	Mm.25593	NM_175340	ENSMUSG00000044231	Nhlrc1	AI505271|B230309E09Rik|EPM2B	NHL repeat containing 1	protein-coding	-0.687840221498881	-0.67826519632285	-0.68141425051819	-0.683835840605149	-0.687245794809854	-0.19019492843641	-0.505338649237521	-0.385078704264485	3.19554980869421	0.232443278921349	1
Merged-chr17-29841901-4	chr17	29841804	29842004	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081160, intron 9 of 15)	intron (NM_001081160, intron 9 of 15)	45978.0	NM_001081160	74762.0	Mm.40901	NM_001081160	ENSMUSG00000043557	Mdga1	1200011I03Rik|GPIM|Mamdc3	MAM domain containing glycosylphosphatidylinositol anchor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-146272488-3	chr6	146272391	146272591	+	880.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019923, intron 37 of 56)	intron (NM_019923, intron 37 of 56)	229732.0	NM_010586	16439.0	Mm.7800	NM_010586	ENSMUSG00000030287	Itpr2	AI649341|InsP3R-2|InsP3R-5|Ip3r2|Itpr5|insP3R2	inositol 1,4,5-triphosphate receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-43052624-3	chr17	43052523	43052723	+	988.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178589, intron 3 of 5)	intron (NM_178589, intron 3 of 5)	36068.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-120528495-4	chr5	120528401	120528601	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177595, intron 12 of 13)	PB1D7|SINE|Alu	17309.0	NM_001177594	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-93818153-2	chr16	93818053	93818253	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-13968.0	NM_001045529	338467.0	Mm.287329	NM_001045529	ENSMUSG00000039456	Morc3	1110051N18Rik|AI452146|BF318192|D16Jhu32e|NXP2|Zcwcc3	microrchidia 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126909584-1	chr8	126909484	126909684	+	633.0	f0_balb.idr	Intergenic	Intergenic	36337.0	NM_024214	67952.0	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-59749719-4	chr9	59749577	59749777	+	970.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001172069, intron 1 of 2)	intron (NM_001172069, intron 1 of 2)	972.0	NM_001172069	71599.0	Mm.279070	NM_027838	ENSMUSG00000051705	Senp8	9130010J17Rik|AU020827|Den1|Nedp1|Prsc2	SUMO/sentrin specific peptidase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-78245732-6	chr17	78245644	78245844	+	826.777771	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015800, intron 2 of 16)	intron (NM_015800, intron 2 of 16)	45496.0	NM_015800	50766.0	Mm.311912	NM_015800	ENSMUSG00000024074	Crim1	AU015004	cysteine rich transmembrane BMP regulator 1 (chordin like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-107448088-2	chr11	107447988	107448188	+	647.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 1 of 9)	B4A|SINE|B4	22632.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-96327928-1	chr9	96327828	96328028	+	863.0	f1_balb.idr	Intergenic	B3|SINE|B2	35787.0	NM_001357213	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	0.059837374722921	-0.246361727375729	-0.249458247681985	-0.114332944863626	-0.255119390216834	-0.24565833741997	0.143628462980335	0.00882521695351669	0.59401993732817	0.798552715033805	1
Merged-chr10-128628033-2	chr10	128627933	128628133	+	616.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-1527.0	NM_013765	27370.0	Mm.32118	NM_013765	ENSMUSG00000025362	Rps26	-	ribosomal protein S26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-61176024-3	chr10	61175924	61176124	+	925.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001017407, intron 2 of 3)	intron (NM_001017407, intron 2 of 3)	762.0	NM_023064	65971.0	Mm.30227	NM_023064	ENSMUSG00000020096	Tbata	1700021K02Rik|AI428928|Spatial|Titest	thymus, brain and testes associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-93337048-4	chr15	93336955	93337155	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028315)	promoter-TSS (NR_028315)	-120.0	NM_024189	67057.0	Mm.4714	NM_024189	ENSMUSG00000022634	Yaf2	2810021M11Rik	YY1 associated factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-3726834-6	chr2	3726703	3726903	+	996.0476070000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025626, intron 1 of 3)	intron (NM_025626, intron 1 of 3)	13345.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-65707326-2	chr18	65707226	65707426	+	753.333313	f1_balb.idr|f1_c57bl6.idr	exon (NM_177028, exon 2 of 15)	exon (NM_177028, exon 2 of 15)	9058.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-104099987-1	chr8	104099887	104100087	+	540.0	f1_balb.idr	intron (NR_131138, intron 1 of 2)	intron (NR_131138, intron 1 of 2)	-1638.0	NM_009868	12562.0	Mm.21767	NM_009868	ENSMUSG00000031871	Cdh5	7B4|AA408225|Cd144|VE-Cad|VECD|VEcad|Vec	cadherin 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-80711147-4	chr15	80711041	80711241	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144812)	promoter-TSS (NM_144812)	-172.0	NM_144812	213988.0	Mm.131328	NM_144812	ENSMUSG00000047888	Tnrc6b	2700090M07Rik|A730065C02Rik|AI848765|D230019K20Rik	trinucleotide repeat containing 6b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-46176007-1	chr14	46175907	46176107	+	820.0	f0_balb.idr	Intergenic	Intergenic	91980.0	NR_002875	218963.0	Mm.282093	NR_002875		Gm1821	-	ubiquitin pseudogene	pseudo	0.725525806046765	0.455491290100409	0.446053350997826	1.38888970441888	0.733244760794362	0.674876386511046	1.19200792844225	0.439990832966959	-0.172973367729814	0.917755593056663	1
Merged-chr17-50509680-5	chr17	50509643	50509843	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013880, exon 1 of 6)	exon (NM_013880, exon 1 of 6)	196.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-29162995-3	chr7	29162892	29163092	+	831.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_182927, exon 5 of 6)	exon (NM_182927, exon 5 of 6)	5655.0	NM_182927	101809.0	Mm.377262	NM_182927	ENSMUSG00000037239	Spred3	AW047143|D130060H24Rik|Spred-3	sprouty-related, EVH1 domain containing 3	protein-coding	0.843824815574005	0.0350484796168658	0.0286302881644867	0.0236550930699577	0.786510422659974	0.0364906770789956	0.0300487542566928	0.203102039120802	0.0717182951027845	0.974002604624546	1
Merged-chr9-32020073-3	chr9	32019979	32020179	+	742.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	-96057.0	NM_001195632	330914.0	Mm.46683	NM_177379	ENSMUSG00000041444	Arhgap32	3426406O18Rik|Gc-gap|Grit|Px-rics|Rics|mKIAA0712|p200Rhogap|p250Gap	Rho GTPase activating protein 32	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-146293523-4	chr5	146293419	146293619	+	999.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153599, intron 7 of 12)	intron (NM_153599, intron 7 of 12)	62269.0	NM_153599	264064.0	Mm.260576	NM_153599	ENSMUSG00000029635	Cdk8	-	cyclin-dependent kinase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-52995923-1	chr19	52995823	52996023	+	778.0	f1_c57bl6.idr	intron (NM_133216, intron 19 of 20)	intron (NM_133216, intron 19 of 20)	14833.0	NR_105834	102465220.0		NR_105834	ENSMUSG00000098730	Mir6407	Gm27832|mmu-mir-6407	microRNA 6407	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-40559975-2	chr18	40559875	40560075	+	580.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	301614.0	NM_026135	383348.0	Mm.76366	NM_026135	ENSMUSG00000051401	Kctd16	4930434H12Rik|Gm1267	potassium channel tetramerisation domain containing 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-88282923-2	chr7	88282808	88283008	+	755.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_009982, intron 2 of 6)	intron (NM_009982, intron 2 of 6)	4823.0	NM_001311790	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-144256627-3	chr1	144256572	144256772	+	552.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7568.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32087094-2	chr2	32086994	32087194	+	550.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2425.0	NR_151493	241303.0	Mm.250441	NM_175511	ENSMUSG00000050592	Fam78a	A130092J06Rik	family with sequence similarity 78, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-23984378-4	chr16	23984290	23984490	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009744, intron 1 of 9)	intron (NM_009744, intron 1 of 9)	-3107.0	NM_001348026	12053.0	Mm.347398	NM_009744	ENSMUSG00000022508	Bcl6	Bcl5	B cell leukemia/lymphoma 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119353367-1	chr11	119353267	119353467	+	639.0	f1_balb.idr	intron (NM_018822, intron 1 of 7)	intron (NM_018822, intron 1 of 7)	2143.0	NM_018822	27029.0	Mm.103788	NM_018822	ENSMUSG00000005043	Sgsh	4632406A19Rik	N-sulfoglucosamine sulfohydrolase (sulfamidase)	protein-coding	2.44921800554583	1.78366489538375	1.04770086694226	1.81494554750661	2.24823567417465	2.86943052532233	1.05451849439392	1.02758866183461	0.435134224688993	0.720054038761969	0.998431161219273
Merged-chr11-100322763-4	chr11	100322656	100322856	+	799.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011508)	TTS (NM_011508)	2807.0	NM_011508	20918.0	Mm.13886	NM_011508	ENSMUSG00000035530	Eif1	Sui1-rs1	eukaryotic translation initiation factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34652030-1	chr17	34651930	34652130	+	638.0	f1_c57bl6.idr	intron (NM_017406, intron 11 of 17)	intron (NM_017406, intron 11 of 17)	4884.0	NM_017406	12915.0	Mm.4068	NM_017406	ENSMUSG00000015461	Atf6b	AA617266|ATF6beta|Creb-rp|Crebl1	activating transcription factor 6 beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-96937729-2	chr11	96937629	96937829	+	661.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_134021)	TTS (NM_134021)	6290.0	NM_134021	103711.0	Mm.254704	NM_134021	ENSMUSG00000018659	Pnpo	AI415282	pyridoxine 5'-phosphate oxidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-126438513-4	chr4	126438397	126438597	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001317173, exon 19 of 19)	3' UTR (NM_001317173, exon 19 of 19)	-8955.0	NM_153402	214150.0	Mm.440915	NM_153402	ENSMUSG00000028842	Ago3	AW048688|C130014L07Rik|Eif2c3	argonaute RISC catalytic subunit 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-99627993-4	chr12	99627888	99628088	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045288)	promoter-TSS (NR_045288)	-14.0	NR_045288	73457.0	Mm.383439	NR_045288	ENSMUSG00000100211	1700064M15Rik	-	RIKEN cDNA 1700064M15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-90931252-4	chr5	90931150	90931350	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026788)	promoter-TSS (NM_026788)	54.0	NM_026788	665563.0	Mm.153030	NM_026788	ENSMUSG00000029376	Mthfd2l	1110019K23Rik|C630010D07Rik	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2-like	protein-coding	0.738458040979004	1.62132772931321	1.44003391420268	0.958119065733839	0.922726192915771	0.786351657334114	1.77072910136574	1.40107497676062	0.171514209050106	0.902253278065054	0.998431161219273
Merged-chr10-13965708-4	chr10	13965659	13965859	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010437)	promoter-TSS (NM_010437)	-316.0	NM_001358783	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-13597340-2	chr6	13597262	13597462	+	858.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_155435, intron 1 of 3)	intron (NR_155435, intron 1 of 3)	10736.0	NR_155435	101118.0	Mm.254845	NM_028990	ENSMUSG00000029569	Tmem168	5730526F17Rik|8430437G11Rik|AI462344|AI504145	transmembrane protein 168	protein-coding	0.476023697830008	0.116726353992963	0.438397398069747	0.106173786558615	0.373668551265702	0.118067514816024	0.888147285338025	0.106977510860332	0.836263713357654	0.678981304082448	1
Merged-chr11-97083034-3	chr11	97082927	97083127	+	872.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19259.0	NR_106181	102465893.0		NR_106181	ENSMUSG00000098769	Mir8103	Gm27841|mmu-mir-8103	microRNA 8103	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-15294596-1	chr9	15294496	15294696	+	580.0	f0_balb.idr	intron (NM_001359258, intron 3 of 7)	intron (NM_001359258, intron 3 of 7)	7011.0	NM_133732	70984.0	Mm.261842	NM_133732	ENSMUSG00000031938	4931406C07Rik	-	RIKEN cDNA 4931406C07 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-70834807-4	chr9	70834718	70834918	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001324473, intron 1 of 8)	intron (NM_001324473, intron 1 of 8)	99990.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-34005375-3	chr1	34005297	34005497	+	852.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276764, intron 3 of 102)	intron (NM_001276764, intron 3 of 102)	-6428.0	NM_133833	13518.0	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-71785176-3	chr7	71785067	71785267	+	919.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-124528.0	NR_130995	78156.0	Mm.243818	NR_130995	ENSMUSG00000108669	4930441H08Rik	-	RIKEN cDNA 4930441H08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-8290087-2	chr4	8289987	8290187	+	556.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51046.0	NM_007592	12319.0	Mm.119320	NM_007592	ENSMUSG00000041261	Car8	AW546993|Ca8|Cals|Cals1|Carp|wdl	carbonic anhydrase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10830851-2	chr19	10830751	10830951	+	559.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001037801)	promoter-TSS (NM_001037801)	-793.0	NM_009852	12511.0	Mm.290897	NM_009852	ENSMUSG00000024670	Cd6	-	CD6 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-32293248-2	chr19	32293148	32293348	+	745.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 2 of 9)	intron (NM_144792, intron 2 of 9)	56068.0	NM_001168525	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-125278461-1	chr8	125278361	125278561	+	812.333313	f0_balb.idr	Intergenic	Intergenic	214372.0	NM_001081337	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	1.22747214055173	1.05914152863237	1.33255411839457	0.827616006117351	1.52959883357897	1.39247743293029	1.57691284177059	1.01270798052747	1.14749017488631	0.375620797251284	0.868789035873457
Merged-chr10-56115315-4	chr10	56115177	56115377	+	988.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001163833, exon 2 of 2)	exon (NM_001163833, exon 2 of 2)	8360.0	NM_001163833	73390.0	Mm.181475	NM_133751	ENSMUSG00000047669	Msl3l2	1700060H10Rik	MSL3 like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-35157690-3	chr7	35157603	35157803	+	975.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28682.0	NM_017394	53896.0	Mm.35567	NM_017394	ENSMUSG00000030495	Slc7a10	AL024237|Asc-1|D7Bwg0847e	solute carrier family 7 (cationic amino acid transporter, y+ system), member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-104678260-1	chr9	104678160	104678360	+	780.0	f0_balb.idr	intron (NM_028719, intron 1 of 15)	intron (NM_028719, intron 1 of 15)	108777.0	NM_028719	74020.0	Mm.326240	NM_028719	ENSMUSG00000032564	Cpne4	3632411M23Rik|4933406O10Rik	copine IV	protein-coding	1.12378386370774	0.997927236303876	1.19455834451731	1.48034507294882	1.97366484685103	1.72987267887192	1.53537177229601	1.92118722897438	2.22216373217011	0.0626771264320127	0.372277308381826
Merged-chr14-27190347-3	chr14	27190249	27190449	+	923.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289686, intron 2 of 12)	intron (NM_001289686, intron 2 of 12)	46356.0	NM_001289686	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-57793182-4	chr15	57793022	57793222	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199449, intron 2 of 3)	intron (NM_199449, intron 2 of 3)	98455.0	NM_199449	387609.0	Mm.36557	NM_199449	ENSMUSG00000071757	Zhx2	Afr-1|Afr1|Raf|mKIAA0854	zinc fingers and homeoboxes 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43712080-2	chr4	43711980	43712180	+	554.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5514.0	NM_019486	56015.0	Mm.377126	NM_019486	ENSMUSG00000046450	Olfr71	MOR262-4|mOR17	olfactory receptor 71	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-129471002-3	chr6	129470978	129471178	+	849.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020008, intron 1 of 5)	intron (NM_020008, intron 1 of 5)	1701.0	NM_001309637	56644.0	Mm.239516	NM_020008	ENSMUSG00000079293	Clec7a	BGR|Clecsf12|beta-GR	C-type lectin domain family 7, member a	protein-coding	0.181184274342876	0.275243691819044	-0.046618316008139	0.220993869295102	0.187144222931215	-0.0416287270961121	0.251471662430233	-0.0491925557119216	-0.608401666961937	0.765915498796706	1
Merged-chr16-20538110-4	chr16	20538008	20538208	+	965.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302970, intron 2 of 10)	intron (NM_001302970, intron 2 of 10)	2628.0	NM_009679	11773.0	Mm.18946	NM_009679	ENSMUSG00000022841	Ap2m1	-	adaptor-related protein complex 2, mu 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-14208762-3	chr2	14208673	14208873	+	742.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081310, intron 3 of 3)	MIR|SINE|MIR	-20641.0	NM_008625	17533.0	Mm.2019	NM_008625	ENSMUSG00000026712	Mrc1	AW259686|CD206|MR	mannose receptor, C type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-31110977-1	chr7	31110877	31111077	+	1000.0	f0_c57.idr	promoter-TSS (NM_001276269)	promoter-TSS (NM_001276269)	20.0	NM_001276269	15451.0	Mm.19182	NM_008281	ENSMUSG00000001249	Hpn	Hlb320	hepsin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-34530228-1	chr8	34530128	34530328	+	545.0	f0_balb.idr	Intergenic	Intergenic	110088.0	NR_040706	330734.0	Mm.149998	NR_040706	ENSMUSG00000109819	B930018H19Rik	B930018H19	RIKEN cDNA B930018H19 gene	ncRNA	1.10301006202991	1.20277231819179	2.23126329251168	1.76836694884598	1.95263163580449	2.73041891097231	2.7131022234929	1.9271582834877	1.81263431743524	0.0826721116277241	0.440062109720246
Merged-chr16-30966677-1	chr16	30966577	30966777	+	635.0	f1_c57bl6.idr	intron (NM_198626, intron 3 of 3)	intron (NM_198626, intron 3 of 3)	114755.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	1.38233485241422	1.09582222513711	0.558624319179848	0.730455097513686	0.957584239788641	0.570497933303201	0.56077118463702	1.23708086912527	-0.557666833322637	0.7299356224411	1
Merged-chr10-81570512-2	chr10	81570412	81570612	+	932.3333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4775.0	NM_019725	21886.0	Mm.38608	NM_019725	ENSMUSG00000034771	Tle2	Grg2|mKIAA4188	transducin-like enhancer of split 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-144253660-2	chr5	144253560	144253760	+	914.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163709, intron 1 of 2)	B2_Mm2|SINE|B2	-1565.0	NM_018772	55950.0	Mm.38011	NM_018772	ENSMUSG00000047843	Bri3	I3	brain protein I3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-53681059-2	chr8	53680959	53681159	+	846.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41994.0	NM_146208	234258.0	Mm.281749	NM_146208	ENSMUSG00000039396	Neil3	AI449477|BC034753|C85903	nei like 3 (E. coli)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-172347831-2	chr2	172347731	172347931	+	596.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025912, intron 1 of 2)	MIR|SINE|MIR	2254.0	NM_025912	67017.0	Mm.30013	NM_025912	ENSMUSG00000027495	Fam210b	2010011I20Rik|AI430961|AV108736	family with sequence similarity 210, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-5252498-2	chr16	5252398	5252598	+	571.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027446, intron 2 of 7)	intron (NM_027446, intron 2 of 7)	3458.0	NM_027446	70511.0	Mm.45780	NM_027446	ENSMUSG00000022544	Eef2kmt	5730409G15Rik|Fam86|Fam86a|eEF2-KMT	eukaryotic elongation factor 2 lysine methyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-82504100-2	chr18	82504000	82504200	+	900.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025245, intron 2 of 3)	intron (NM_001025245, intron 2 of 3)	28977.0	NM_010777	17196.0	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-94058503-4	chr1	94058399	94058599	+	963.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	-5946.0	NM_008798	18566.0	Mm.5024	NM_008798	ENSMUSG00000026285	Pdcd1	Ly101|PD-1|Pdc1	programmed cell death 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-95830462-2	chr11	95830362	95830562	+	976.875	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001163464, exon 8 of 8)	3' UTR (NM_001163464, exon 8 of 8)	5962.0	NM_153104	237928.0	Mm.133075	NM_153104	ENSMUSG00000050860	Phospho1	D11Moh36|Phospo1	phosphatase, orphan 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152535964-2	chr1	152535864	152536064	+	965.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 12 of 17)	intron (NM_016846, intron 12 of 17)	89253.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-54801967-4	chr11	54801868	54802068	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14265.0	NM_178626	72729.0	Mm.29476	NM_178626	ENSMUSG00000052298	Cdc42se2	2810404F18Rik|AA408783|AA536669|SPEC2	CDC42 small effector 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-129922874-1	chr6	129922774	129922974	+	674.0	f0_balb.idr	Intergenic	IAPEY3-int|LTR|ERVK	-9650.0	NM_008463	16636.0	Mm.14111	NM_008463	ENSMUSG00000030173	Klra5	Ly49e	killer cell lectin-like receptor, subfamily A, member 5	protein-coding	1.63299505350963	0.879688562310627	1.89088036193546	0.848801032898861	1.73763476041762	0.883520126682832	1.09486092758736	1.92672737886879	0.272107170362331	0.844602482407393	0.998431161219273
Merged-chr1-191881259-3	chr1	191881198	191881398	+	762.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25483.0	NM_009579	22782.0	Mm.9024	NM_009579	ENSMUSG00000037434	Slc30a1	AI839647|C130040I11Rik|Znt1	solute carrier family 30 (zinc transporter), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122551491-6	chr8	122551419	122551619	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357349)	promoter-TSS (NM_001357349)	-190.0	NM_001357349	234839.0	Mm.37324	NM_001037298	ENSMUSG00000014444	Piezo1	9630020g22|Fam38a|mKIAA0233	piezo-type mechanosensitive ion channel component 1	protein-coding	5.53846159810114	5.47219034877768	3.51800759333671	5.48853520836013	5.13161114697484	5.2661609974629	5.44028819193555	5.73974631964314	0.231450870948432	0.547562857196119	0.957826773868235
Merged-chr14-122049256-3	chr14	122049140	122049340	+	861.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14566.0	NM_001037744	223262.0	Mm.297637	NM_001037744	ENSMUSG00000071229	Timm8a2	-	translocase of inner mitochondrial membrane 8A2	protein-coding	-1.31349849087795	-1.28274354783242	-1.29349452597086	-1.3023256995151	-1.3130151546297	-1.28041376602105	-0.694015972326031	-1.30074492367298	2.57396649482007	0.456321314346772	1
Merged-chr12-21418901-2	chr12	21418815	21419015	+	730.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1479.0	NM_011739	22630.0	Mm.289630	NM_011739	ENSMUSG00000076432	Ywhaq	2700028P07Rik|AA409740|AU021156|R74690	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	protein-coding	1.34298633854457	1.05297491331132	1.34184620376446	0.803696105764732	0.787962282252451	1.77086621756358	1.59822721193658	1.30827772467058	1.02751196602902	0.448459729176627	0.914989884444793
Merged-chr19-4811171-4	chr19	4811086	4811286	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_019869, exon 1 of 3)	exon (NM_019869, exon 1 of 3)	448.0	NM_001290127	102902673.0	Mm.426069	NM_001290127	ENSMUSG00000096370	Gm21992	Rbm14-rbm4	predicted gene 21992	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-62751302-4	chr1	62751218	62751418	+	889.287476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077404, intron 7 of 16)	intron (NM_001077404, intron 7 of 16)	43414.0	NR_040601	74992.0	Mm.401979	NR_040601		4930487H11Rik	-	RIKEN cDNA 4930487H11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-5035909-4	chr2	5035813	5036013	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356487, intron 7 of 13)	ID_B1|SINE|B4	-23122.0	NM_027290	70024.0	Mm.23828	NM_027290	ENSMUSG00000026669	Mcm10	2410041F14Rik|AU018508|C330019M07Rik|C79164	minichromosome maintenance 10 replication initiation factor	protein-coding	4.85644181144796	5.64697171467701	5.31412108035062	5.08884129545687	4.89271703786431	5.33965828296381	5.34975699282153	5.17673642975013	-0.0611321986066343	0.843027771462769	0.998431161219273
Merged-chr4-56940780-2	chr4	56940680	56940880	+	595.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175518, intron 1 of 17)	MTD|LTR|ERVL-MaLR	6649.0	NM_175518	242474.0	Mm.296632	NM_175518	ENSMUSG00000055296	Tmem245	A630051L19Rik|AI957324|D730040F13Rik	transmembrane protein 245	protein-coding	-0.371209252440364	-0.355126444827776	-0.360361366948729	-0.364422640311784	-0.370196101534659	-0.353950844213183	0.567679470802302	0.107986669072213	3.85287224097428	0.126391850998806	1
Merged-chr16-8831667-2	chr16	8831567	8831767	+	838.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081400, intron 2 of 3)	intron (NM_001081400, intron 2 of 3)	1567.0	NM_001081400	69053.0	Mm.390868	NM_001081400	ENSMUSG00000022507	1810013L24Rik	1110017P05Rik|3010002C02Rik|AA792997|AW124177|Gm19906|R74903	RIKEN cDNA 1810013L24 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-48325911-4	chr17	48325830	48326030	+	992.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177083, exon 6 of 6)	3' UTR (NM_177083, exon 6 of 6)	9768.0	NM_177083	320148.0	Mm.123455	NM_177083	ENSMUSG00000043740	B430306N03Rik	Treml6	RIKEN cDNA B430306N03 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70817445-2	chr14	70817342	70817542	+	707.5	f0_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-35491.0	NR_045939	73648.0	Mm.410851	NR_045939	ENSMUSG00000099528	2410012E07Rik	-	RIKEN cDNA 2410012E07 gene	ncRNA	-1.26443160715111	-1.51269227652887	-1.52213727607237	-1.52989567991432	-1.54173241655551	-1.51064550572703	-1.37138617352608	-1.528506929336	-0.563662181339258	0.873093626595385	1
Merged-chr11-20897364-2	chr11	20897264	20897464	+	822.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66256.0	NM_173752	216551.0	Mm.76694	NM_173752	ENSMUSG00000042363	Lgalsl	1110067D22Rik|A530071M23|Grpa|Hspc159|Lgalsla	lectin, galactoside binding-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-65907184-4	chr17	65907073	65907273	+	947.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-21418.0	NM_009067	19765.0	Mm.17009	NM_009067	ENSMUSG00000024096	Ralbp1	RLIP76|Rip1	ralA binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-5102096-2	chr18	5101996	5102196	+	824.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347449, intron 22 of 30)	intron (NM_001347449, intron 22 of 30)	55507.0	NM_001347449	225115.0	Mm.136791	NM_153153	ENSMUSG00000024236	Svil	AU024053|B430302E16Rik	supervillin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-88232011-2	chr1	88231911	88232111	+	911.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001281466, intron 5 of 41)	intron (NM_001281466, intron 5 of 41)	4991.0	NM_001281466	100040766.0	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	Heatr7b1	maestro heat-like repeat family member 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-23797003-3	chr10	23796931	23797131	+	722.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358812)	promoter-TSS (NM_001358812)	45.0	NM_001358812	76306.0	Mm.294271	NM_183116	ENSMUSG00000037455	Slc18b1	1110021L09Rik	solute carrier family 18, subfamily B, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-80382969-1	chr11	80382869	80383069	+	575.0	f0_balb.idr	promoter-TSS (NM_011751)	promoter-TSS (NM_011751)	-310.0	NM_001130169	22680.0	Mm.401332	NM_011751	ENSMUSG00000017421	Zfp207	8430401D15Rik|BuGZ|Zep|Znf207	zinc finger protein 207	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-5467818-2	chr16	5467718	5467918	+	669.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-211862.0	NM_027446	70511.0	Mm.45780	NM_027446	ENSMUSG00000022544	Eef2kmt	5730409G15Rik|Fam86|Fam86a|eEF2-KMT	eukaryotic elongation factor 2 lysine methyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-111033984-4	chr9	111033894	111034094	+	979.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008522, intron 13 of 16)	RSINE1|SINE|B4	14702.0	NM_008522	17002.0	Mm.282359	NM_008522	ENSMUSG00000032496	Ltf	Csp82|Lf|MMS10R|Ms10r	lactotransferrin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-27192020-4	chr3	27191919	27192119	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 1 of 4)	intron (NM_178772, intron 1 of 4)	9015.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3771275-4	chr12	3771164	3771364	+	871.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027869, intron 16 of 20)	intron (NR_027869, intron 16 of 20)	-35716.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-61687305-2	chr8	61687205	61687405	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001293772, intron 9 of 21)	intron (NM_001293772, intron 9 of 21)	72793.0	NM_001293773	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90515119-4	chr2	90515003	90515203	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	-35929.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	3.67576825216056	3.41467873810453	3.78202261805122	2.87336653685247	3.7590596204587	3.43991551018429	4.20608290808185	2.8890932266974	0.270826042747949	0.632354777319701	0.982230082053879
Merged-chr19-34612830-3	chr19	34612708	34612908	+	850.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001005858, exon 2 of 2)	3' UTR (NM_001005858, exon 2 of 2)	4851.0	NM_001005858	667370.0	Mm.271850	NM_001005858	ENSMUSG00000062488	Ifit3b	I830012O16Rik	interferon-induced protein with tetratricopeptide repeats 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-9122821-4	chr4	9122713	9122913	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger5|DNA|TcMar-Tigger	-146480.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-123357943-3	chr8	123357857	123358057	+	889.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172287, intron 6 of 14)	intron (NM_172287, intron 6 of 14)	-15754.0	NM_001359076	66855.0	Mm.178818	NM_025804	ENSMUSG00000001472	Tcf25	1100001J13Rik|1810041K11Rik|D8Ertd325e|Nulp1|mKIAA1049	transcription factor 25 (basic helix-loop-helix)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-119826188-4	chr8	119826086	119826286	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028071, intron 2 of 3)	intron (NM_028071, intron 2 of 3)	14393.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-140665360-1	chr3	140665260	140665460	+	631.0	f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	546995.0	NM_008811	18598.0	Mm.4223	NM_008811	ENSMUSG00000047674	Pdha2	Pdhal	pyruvate dehydrogenase E1 alpha 2	protein-coding	-1.50561175621786	-1.47331375025452	-1.02203377115094	-1.49110398925286	-1.50334449591826	-1.47119716082604	-1.48086985756939	-1.48966786617048	-2.07776723614574	0.550394407909386	1
Merged-chr13-45105407-4	chr13	45105375	45105575	+	946.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-103379.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	4.16684435686639	5.37707616083608	5.30923477623593	4.80849647225148	3.92641468195314	2.34051793296163	4.43253149808534	4.7558850146558	-1.07824934568116	0.031189738211316	0.243457282903795
Merged-chr15-84234811-2	chr15	84234711	84234911	+	593.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133167, intron 1 of 12)	B4A|SINE|B4	2768.0	NM_133167	170736.0	Mm.323892	NM_133167	ENSMUSG00000022438	Parvb	AI595373|AW742462|D15Gsk1|affixin	parvin, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-43543945-2	chr1	43543845	43544045	+	741.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010879, intron 3 of 4)	MER2|DNA|TcMar-Tigger	98194.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-177795527-4	chr1	177795422	177795622	+	933.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007422, intron 1 of 12)	(A)n|Simple_repeat|Simple_repeat	987.0	NM_007422	11566.0	Mm.338021	NM_007422	ENSMUSG00000015961	Adss	AI314886|AS|Adss2	adenylosuccinate synthetase, non muscle	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-8942048-6	chr12	8941950	8942150	+	919.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5879.0	NM_010770	17182.0	Mm.42226	NM_010770	ENSMUSG00000020583	Matn3	AV009181	matrilin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-4870366-2	chr3	4870233	4870433	+	558.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	71625.0	NR_045272	100503859.0	Mm.75172	NR_045272	ENSMUSG00000098659	1110015O18Rik	-	RIKEN cDNA 1110015O18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-37253309-3	chr9	37253259	37253459	+	746.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145960, intron 1 of 18)	(A)n|Simple_repeat|Simple_repeat	2379.0	NM_020258	56857.0	Mm.440037	NM_020258	ENSMUSG00000032122	Slc37a2	G3PP|Slc37a1|cI-2|ci2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-128617770-5	chr4	128617585	128617785	+	839.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_205823, exon 1 of 1)	exon (NM_205823, exon 1 of 1)	934.0	NM_205823	384059.0	Mm.331901	NM_205823	ENSMUSG00000062545	Tlr12	Gm1365|Tlr11	toll-like receptor 12	protein-coding	0.847072630947211	0.467918432952705	0.459009354940111	1.30285387481603	1.05662687486933	0.469916915467475	0.460980532991284	1.03134788390398	-0.172676433016985	0.922323364261799	1
Merged-chr19-7484206-3	chr19	7484096	7484296	+	857.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271487)	promoter-TSS (NM_001271487)	-905.0	NM_001003934	20168.0	Mm.246990	NM_053076	ENSMUSG00000024758	Rtn3	RTN3-A1	reticulon 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-145804118-4	chr2	145804032	145804232	+	809.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028724, intron 2 of 12)	intron (NM_028724, intron 2 of 12)	18016.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140419900-2	chr5	140419800	140420000	+	966.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_133916, intron 1 of 18)	intron (NM_133916, intron 1 of 18)	595.0	NM_133916	27979.0	Mm.21671	NM_133916	ENSMUSG00000056076	Eif3b	AL033316|AL033334|AL033369|AW208965|D5Wsu45e|EIF3-ETA|EIF3-P110|EIF3-P116|Eif3s9|PRT1	eukaryotic translation initiation factor 3, subunit B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-58010406-4	chr11	58010344	58010544	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028451, intron 1 of 18)	intron (NM_028451, intron 1 of 18)	1380.0	NM_028451	73158.0	Mm.248843	NM_028451	ENSMUSG00000037331	Larp1	1810024J12Rik|3110040D16Rik|Larp|mKIAA0731	La ribonucleoprotein domain family, member 1	protein-coding	4.96002864849557	5.01826846910077	4.18506376647717	4.65829248480958	5.05223546233	5.37982048836849	4.72538334836789	4.918872981795	0.35313521449999	0.308808845933706	0.809295017856989
Merged-chr2-37702986-3	chr2	37702892	37703092	+	868.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-14708.0	NR_039590	100628597.0		NR_039590	ENSMUSG00000092958	Mir5128	mir-5128|mmu-mir-5128|mu-mir-5128	microRNA 5128	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78590204-2	chr15	78590104	78590304	+	842.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-6843.0	NM_028195	72318.0	Mm.32911	NM_028195	ENSMUSG00000018008	Cyth4	2510004M07Rik|5830469K17Rik|AI467541|Pscd4|mFLJ00017	cytohesin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-102826975-1	chr2	102826875	102827075	+	576.0	f1_c57bl6.idr	intron (NM_001039150, intron 11 of 13)	intron (NM_001039150, intron 11 of 13)	74690.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	0.584009764533111	1.20177148716113	0.6104695275838	1.34541823259196	0.586505154292591	1.67958354972889	0.613260116586134	1.3544962151472	0.685902854350594	0.675995594850096	0.99440487726309
Merged-chr10-120954503-2	chr10	120954390	120954590	+	615.5	f0_balb.idr|f1_c57bl6.idr	intron (NM_001081193, intron 1 of 12)	intron (NM_001081193, intron 1 of 12)	24840.0	NM_001081193	380664.0	Mm.339371	NM_001081193	ENSMUSG00000048661	Lemd3	AI316861|Man1	LEM domain containing 3	protein-coding	-1.07361930669767	-1.02544251975411	-1.2004287837262	-1.20901812710502	-1.06996311248803	-1.02317653597796	-1.19806164397903	-1.20748063874688	0.0405495723978098	0.988820212144827	1
Merged-chr1-136127092-4	chr1	136127005	136127205	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_046167)	TTS (NR_046167)	4078.0	NR_046170	329253.0	Mm.487858	NR_046167	ENSMUSG00000086264	Gm15850	6530439I21	predicted gene 15850	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-124425133-4	chr9	124425025	124425225	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_027950)	TTS (NR_027950)	1338.0	NR_015516	75135.0	Mm.476814	NR_015516		4930526I15Rik	1600027J15Rik	RIKEN cDNA 4930526I15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-3964467-1	chr11	3964367	3964567	+	592.0	f0_c57.idr	intron (NM_022889, intron 1 of 14)	intron (NM_022889, intron 1 of 14)	492.0	NM_022889	64934.0	Mm.28659	NM_022889	ENSMUSG00000020430	Pes1	-	pescadillo ribosomal biogenesis factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-55119306-2	chr3	55119206	55119406	+	890.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001144987, intron 2 of 8)	intron (NM_001144987, intron 2 of 8)	7140.0	NM_001144987	229285.0	Mm.235523	NM_144895	ENSMUSG00000036580	Spg20	AI840044|C79168|SPARTIN|Spart|TAHCCP1|mKIAA0610	spastic paraplegia 20, spartin (Troyer syndrome) homolog (human)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-125733612-4	chr8	125733513	125733713	+	852.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310688)	promoter-TSS (NM_001310688)	-590.0	NM_025636	66566.0	Mm.25296	NM_025636	ENSMUSG00000031851	Ntpcr	2310079N02Rik|AI449709	nucleoside-triphosphatase, cancer-related	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-58481408-4	chr13	58481260	58481460	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-78017.0	NM_001301341	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-25094682-9	chr12	25094576	25094776	+	920.3312380000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010496, intron 2 of 2)	intron (NM_010496, intron 2 of 2)	1416.0	NM_010496	15902.0	Mm.34871	NM_010496	ENSMUSG00000020644	Id2	AI255428|C78922|Idb2|bHLHb26	inhibitor of DNA binding 2	protein-coding	1.67951260160857	0.938246538590314	1.47884554347263	0.907211261686531	1.49133801295359	2.1216191378996	1.14950143671648	1.68769524834154	1.21331340976068	0.337126774457039	0.83703930093451
Merged-chr4-101649362-2	chr4	101649262	101649462	+	827.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_175036, intron 1 of 3)	intron (NM_175036, intron 1 of 3)	1579.0	NM_175036	230514.0	Mm.4756	NM_175036	ENSMUSG00000035212	Leprot	LEPR|OB-RGRP|Obrgrp|VPS55	leptin receptor overlapping transcript	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-24134157-4	chr7	24134047	24134247	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019941, intron 1 of 4)	CpG	1775.0	NR_153441	56525.0	Mm.295595	NM_019941	ENSMUSG00000047603	Zfp235	0610030O19Rik|AI428448	zinc finger protein 235	protein-coding	4.61233976342064	3.63601573317994	3.19091251070615	3.99493490855116	4.67472986700465	3.66328426554796	3.94284852543336	3.51643420183181	0.0898592475684117	0.86391285870784	0.998431161219273
Merged-chr7-64338926-2	chr7	64338826	64339026	+	666.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172742, exon 16 of 16)	3' UTR (NM_172742, exon 16 of 16)	35169.0	NM_177893	330554.0	Mm.236510	NM_177893	ENSMUSG00000033458	Fan1	6030441H18Rik|Mtmr15|mFAN1	FANCD2/FANCI-associated nuclease 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4847258-3	chr16	4847159	4847359	+	976.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030192, intron 1 of 15)	intron (NM_030192, intron 1 of 15)	11843.0	NM_030192	78809.0	Mm.325551	NM_030192	ENSMUSG00000022518	4930562C15Rik	-	RIKEN cDNA 4930562C15 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-75861853-3	chr3	75861745	75861945	+	712.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	95104.0	NM_175193	73124.0	Mm.249232	NM_175193	ENSMUSG00000034109	Golim4	3110027H23Rik|GIMPC|GPP130|Golph4|P138	golgi integral membrane protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-135537815-2	chr1	135537715	135537915	+	562.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_173437, intron 1 of 28)	intron (NM_173437, intron 1 of 28)	47540.0	NM_173437	215690.0	Mm.34977	NM_173437	ENSMUSG00000009418	Nav1	9530089B19|9930003A20Rik|C230080M11Rik|Gm38399|Pomfil3|Unc53h1|mKIAA1151|steerin-1	neuron navigator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-26380854-3	chr8	26380761	26380961	+	911.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	222692.0	NM_199042	73754.0	Mm.383241	NM_199042	ENSMUSG00000037214	Thap1	4833431A01Rik|AW490810	THAP domain containing, apoptosis associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-30397164-2	chr16	30397074	30397274	+	956.366699	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8644.0	NM_001128096	224088.0	Mm.8924	NM_001128094	ENSMUSG00000022533	Atp13a3	AU022875|Gm1745|Gm541|Gm542	ATPase type 13A3	protein-coding	1.27433574380419	0.827264671659236	1.39747313532117	2.3674528051807	1.1426175989768	1.46647542035206	1.24588483460262	0.797076370313341	-1.44267217403988	0.268309423993801	0.771491404955495
Merged-chr6-137823317-2	chr6	137823217	137823417	+	891.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172733, intron 6 of 8)	(TCTG)n|Simple_repeat|Simple_repeat	68740.0	NM_172733	232449.0	Mm.29181	NM_172733	ENSMUSG00000030225	Dera	2010002D22Rik|2500002K03Rik|DEOC	deoxyribose-phosphate aldolase (putative)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-51243039-2	chr14	51242971	51243171	+	612.5	f0_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13041.0	NM_053113	93726.0	Mm.153688	NM_053113	ENSMUSG00000047222	Rnase2a	Ear11	ribonuclease, RNase A family, 2A (liver, eosinophil-derived neurotoxin)	protein-coding	-1.58994551673671	-1.55912852307891	-1.56844783632235	-1.57610299769523	-1.18549093183599	-1.55710898902261	-1.56633814807757	-1.57473272746952	1.78703309985663	0.610309988231842	1
Merged-chr6-32461219-2	chr6	32461119	32461319	+	809.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175750, intron 3 of 31)	intron (NM_175750, intron 3 of 31)	-49922.0	NR_040277	319849.0	Mm.440860	NR_040277	ENSMUSG00000086763	Plxna4os1	B230378P21Rik	plexin A4, opposite strand 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-75465149-4	chr18	75465069	75465269	+	692.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201354, intron 10 of 11)	intron (NM_201354, intron 10 of 11)	-49476.0	NR_045879	100038353.0	Mm.440724	NR_045879	ENSMUSG00000097712	Gm10532	-	predicted gene 10532	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-80999664-2	chr17	80999564	80999764	+	556.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026516, intron 3 of 3)	intron (NM_026516, intron 3 of 3)	55032.0	NM_026516	68027.0	Mm.357108	NM_026516	ENSMUSG00000024245	Tmem178	2810417M05Rik|Tmem178a	transmembrane protein 178	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-13756600-3	chr4	13756508	13756708	+	927.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111027, intron 1 of 11)	intron (NM_001111027, intron 1 of 11)	5311.0	NM_001111027	12395.0	Mm.4909	NM_009822	ENSMUSG00000006586	Runx1t1	Cbfa2t1h|ETO|MTG8	runt-related transcription factor 1; translocated to, 1 (cyclin D-related)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-74981158-3	chr7	74981060	74981260	+	676.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	-49051.0	NR_131122	75205.0	Mm.399304	NR_131122	ENSMUSG00000108803	4930533N22Rik	Gm44904	RIKEN cDNA 4930533N22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-86485174-4	chr11	86485072	86485272	+	813.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029788, intron 1 of 8)	CpG	515.0	NM_029788	76892.0	Mm.262707	NM_029788	ENSMUSG00000020521	Rnft1	0610013E23Rik|AV007605	ring finger protein, transmembrane 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-114744138-1	chr9	114744038	114744238	+	573.0	f1_c57bl6.idr	intron (NM_026036, intron 3 of 3)	intron (NM_026036, intron 3 of 3)	12935.0	NM_026036	67213.0	Mm.28858	NM_026036	ENSMUSG00000032434	Cmtm6	2810051A14Rik|AA536733|Cklfsf6	CKLF-like MARVEL transmembrane domain containing 6	protein-coding	0.943866102472313	0.294177287820807	0.283628581054296	1.52513376365146	0.263448061387797	0.895234096435514	0.285971799619188	0.276808968301384	-2.05820189112941	0.287493539101595	1
Merged-chr3-136368772-4	chr3	136368707	136368907	+	974.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42741.0	NM_001033350	242248.0	Mm.30832	NM_001033350	ENSMUSG00000037922	Bank1	A530094C12Rik|AI451642|AVIEF|BANK	B cell scaffold protein with ankyrin repeats 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-94154683-4	chr13	94154555	94154755	+	986.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172589, intron 2 of 3)	intron (NM_172589, intron 2 of 3)	96859.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-42512757-1	chr19	42512657	42512857	+	639.0	f1_c57bl6.idr	Intergenic	Lx10|LINE|L1	-6048.0	NM_177464	52013.0	Mm.254169	NM_177464	ENSMUSG00000025184	R3hcc1l	1700036B12Rik|AI450607|C10orf28|D19Ertd386e|GIDRP86|Gidrp88	R3H domain and coiled-coil containing 1 like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-72550348-1	chr11	72550248	72550448	+	786.0	f0_balb.idr	promoter-TSS (NM_029932)	promoter-TSS (NM_029932)	-102.0	NM_029932	77577.0	Mm.46185	NM_029932	ENSMUSG00000020798	Spns3	9830002I17Rik	spinster homolog 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35826247-2	chr17	35826147	35826347	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008027, intron 8 of 12)	intron (NM_008027, intron 8 of 12)	2890.0	NM_008027	14251.0	Mm.2931	NM_008027	ENSMUSG00000059714	Flot1	reggie-2	flotillin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21505746-2	chr9	21505646	21505846	+	660.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357721, intron 19 of 19)	intron (NM_001357721, intron 19 of 19)	4148.0	NM_001324510	17083.0	Mm.196618	NM_010744	ENSMUSG00000032180	Tmed1	Il1rl1l|Ly84l|St2l	transmembrane p24 trafficking protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-5275506-4	chr5	5275397	5275597	+	817.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011074, intron 2 of 14)	intron (NM_011074, intron 2 of 14)	-9429.0	NM_001310448	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	3.20293187719109	3.20338587196255	2.70236362143857	2.73713183209102	3.16784461257451	2.53959547973117	2.72325018925591	2.22739589346117	-0.496762104474137	0.474799822979701	0.927029054433838
Merged-chr11-29130764-4	chr11	29130711	29130911	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027869)	promoter-TSS (NM_027869)	60.0	NM_027869	71701.0	Mm.211131	NM_027869	ENSMUSG00000020464	Pnpt1	1200003F12Rik|Old35|PNPase|Pnptl1	polyribonucleotide nucleotidyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-34111386-3	chr10	34111282	34111482	+	686.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14863.0	NM_178908	103511.0	Mm.66334	NM_178908	ENSMUSG00000049872	Fam26e	BB146404|Calhm5	family with sequence similarity 26, member E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-86147882-2	chr12	86147782	86147982	+	964.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029601, intron 4 of 7)	B4A|SINE|B4	-21459.0	NR_046081	328136.0	Mm.312050	NR_046081	ENSMUSG00000097543	Gm805	-	predicted gene 805	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6274434-3	chr19	6274326	6274526	+	927.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2470.0	NM_010119	13660.0	Mm.30169	NM_010119	ENSMUSG00000024772	Ehd1	AA409636|Past1|RME-1	EH-domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70891581-2	chr8	70891481	70891681	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_053248, intron 2 of 14)	intron (NM_053248, intron 2 of 14)	1176.0	NM_053248	114479.0	Mm.172923	NM_053248	ENSMUSG00000000792	Slc5a5	NIS	solute carrier family 5 (sodium iodide symporter), member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-40929366-1	chr14	40929266	40929466	+	585.5	f0_balb.idr	intron (NM_145928, intron 2 of 8)	intron (NM_145928, intron 2 of 8)	18843.0	NM_001316748	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-11216913-2	chr10	11216813	11217013	+	667.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	-64417.0	NM_027968	71865.0	Mm.276229	NM_027968	ENSMUSG00000047648	Fbxo30	1700026A16Rik|MUSA1	F-box protein 30	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5794991-6	chr19	5794885	5795085	+	945.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_002847)	TTS (NR_002847)	996.0	NR_144621	109146451.0		NR_144621		Mascrna	-	Malat1-associated small cytoplasmic RNA	scRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69920582-2	chr11	69920482	69920682	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166590)	promoter-TSS (NM_001166590)	48.0	NM_001166590	276770.0	Mm.18026	NM_181582	ENSMUSG00000078812	Eif5a	AA410058|D19Wsu54e|Eif4d|Eif5a1|eIF-4D|eIF-5A|eIF-5A-1|eIF-5A1	eukaryotic translation initiation factor 5A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-24651332-4	chr10	24651193	24651393	+	969.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008813, exon 20 of 25)	exon (NM_008813, exon 20 of 25)	55851.0	NM_010217	14219.0	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	3.03974108927874	2.8276228325176	2.16396685698672	3.01414111859389	3.06750051957365	5.06388912200427	3.43753103499369	3.70362249949807	1.87294932025883	0.00393458629479934	0.0552345940308141
Merged-chr12-100053393-4	chr12	100053291	100053491	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164426, intron 2 of 2)	intron (NM_001164426, intron 2 of 2)	-58940.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123016116-2	chr5	123016016	123016216	+	862.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_175423, intron 1 of 1)	intron (NM_175423, intron 1 of 1)	1042.0	NM_175423	109305.0	Mm.218582	NM_175423	ENSMUSG00000049686	Orai1	D730049H07Rik|Tmem142a|orai-1	ORAI calcium release-activated calcium modulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-5764897-4	chr18	5764794	5764994	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360982, intron 5 of 7)	intron (NM_001360982, intron 5 of 7)	172247.0	NM_001360981	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	5.41521360011883	5.70065626966095	5.9423676807997	5.67943053140713	5.66344594885083	5.35341188485041	4.95627676139074	5.93091198936323	-0.184461808443957	0.518917261051775	0.947641799425091
Merged-chr17-29395530-4	chr17	29395442	29395642	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34628.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	6.46192199064255	5.77037362785451	6.23250606982406	5.32635369405128	5.93676985704225	5.69143763597338	6.06451989459778	6.31343019079782	0.00258205930560916	0.992538006686499	0.998431161219273
Merged-chr10-12916990-2	chr10	12916890	12917090	+	558.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_038027, exon 4 of 4)	non-coding (NR_038027, exon 4 of 4)	6137.0	NR_038027	320273.0	Mm.417706	NR_038027	ENSMUSG00000097378	B230208H11Rik	-	RIKEN cDNA B230208H11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133052596-2	chr4	133052496	133052696	+	803.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146155, intron 2 of 6)	intron (NM_146155, intron 2 of 6)	41090.0	NM_146155	230793.0	Mm.31816	NM_146155	ENSMUSG00000037692	Ahdc1	D030015G18Rik	AT hook, DNA binding motif, containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-56305112-4	chr2	56305030	56305230	+	837.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3C|LINE|L1	-480681.0	NR_105751	102465169.0		NR_105751	ENSMUSG00000098437	Mir195b	Gm27491|mmu-mir-195b	microRNA 195b	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67296974-1	chr10	67296874	67297074	+	562.0	f0_balb.idr	Intergenic	Intergenic	-11693.0	NM_001036293	641340.0	Mm.136223	NM_001036293	ENSMUSG00000075000	Nrbf2	NRBF-2	nuclear receptor binding factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-57959419-4	chr4	57959320	57959520	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3009.0	NM_011660	22166.0	Mm.260618	NM_011660	ENSMUSG00000028367	Txn1	ADF|AW550880|Trx1|Txn	thioredoxin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-34764911-3	chr4	34764814	34765014	+	898.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	-8655.0	NM_001033255	214568.0	Mm.297405	NM_001033255	ENSMUSG00000071015	Gm136	-	predicted gene 136	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6336086-2	chr19	6335986	6336186	+	591.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001168489, intron 2 of 9)	intron (NM_001168489, intron 2 of 9)	1047.0	NM_008583	17283.0	Mm.12917	NM_008583	ENSMUSG00000024947	Men1	AW045611	multiple endocrine neoplasia 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-48537245-2	chr6	48537159	48537359	+	879.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347164)	promoter-TSS (NM_001347164)	215.0	NR_130985	69432.0		NR_130985	ENSMUSG00000097716	1700026J14Rik	-	RIKEN cDNA 1700026J14 gene	ncRNA	2.1457725499134	1.1266750259697	1.09035070783772	1.06085909814551	1.80533631979426	3.0022533060957	3.02792509642372	2.1781633821444	2.7563056631223	0.0122015824492185	0.125481073907763
Merged-chr17-83351812-4	chr17	83351703	83351903	+	996.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357886, intron 1 of 21)	intron (NM_001357886, intron 1 of 21)	872.0	NM_001357886	78798.0	Mm.295565	NM_199466	ENSMUSG00000032624	Eml4	4930443C24Rik|AI644019	echinoderm microtubule associated protein like 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-188984216-3	chr1	188984135	188984335	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153196, intron 10 of 17)	intron (NR_153196, intron 10 of 17)	23605.0	NM_001359577	226823.0	Mm.209880	NM_172650	ENSMUSG00000026608	Kctd3	4930438A20Rik|9330185B06|E330032J19Rik|NY-REN-45	potassium channel tetramerisation domain containing 3	protein-coding	4.05803850397648	4.05358796615798	3.97596423788966	3.7633100409777	2.08920574448042	2.1789164681211	2.30513034898537	1.76993933349314	-3.28005610468535	1.08200328052422e-06	6.8566243097163e-05
Merged-chr15-78350379-2	chr15	78350308	78350508	+	755.900024	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007780, exon 14 of 14)	3' UTR (NM_007780, exon 14 of 14)	1809.0	NR_106137	102465776.0		NR_106137	ENSMUSG00000098996	Mir7676-1	Gm27600|mmu-mir-7676-1	microRNA 7676-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84205174-2	chr8	84205056	84205256	+	858.958374	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-3362.0	NR_029740	387216.0		NR_029740	ENSMUSG00000065611	Mir23a	Mirn23a|mir-23a|mmu-mir-23a	microRNA 23a	ncRNA	0.99162655382697	0.865463027166065	1.71012626854109	1.03176647474407	1.65783808878622	1.43264029635412	1.06204574102245	1.56745693653005	0.943451047683822	0.465720824688507	0.922736970596151
Merged-chr13-8861134-4	chr13	8861028	8861228	+	962.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172445, exon 2 of 14)	exon (NM_172445, exon 2 of 14)	9916.0	NM_001039389	207615.0	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-142988931-4	chr6	142988833	142989033	+	799.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24481.0	NM_011374	20449.0	Mm.260838	NM_011374	ENSMUSG00000030283	St8sia1	9330109E03Rik|GD3S|Sia-T|Siat8|Siat8a	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-125271705-4	chr10	125271632	125271832	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358496, intron 3 of 5)	intron (NM_001358496, intron 3 of 5)	37084.0	NM_001358915	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-59189569-2	chr2	59189469	59189669	+	544.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 1 of 20)	(TTTTG)n|Simple_repeat|Simple_repeat	28719.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-110380267-5	chr11	110380173	110380373	+	889.2000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18829.0	NM_001356345	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-36816817-3	chr3	36816715	36816915	+	886.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46291.0	NM_172679	229227.0	Mm.207907	NM_172679	ENSMUSG00000037270	4932438A13Rik	4732443H21|B830039D19Rik|D630029K19Rik|FSA|Kiaa1109|Tweek	RIKEN cDNA 4932438A13 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-122656973-1	chr6	122656873	122657073	+	575.0	f1_balb.idr	Intergenic	RLTR22_Mur|LTR|ERVK	30549.0	NM_139218	73708.0	Mm.27982	NM_139218	ENSMUSG00000046323	Dppa3	2410075G02Rik|PCG7|PGC7|Stella	developmental pluripotency-associated 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-39503353-4	chr1	39503251	39503451	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24596.0	NM_001357521	54610.0	Mm.387293	NM_018775	ENSMUSG00000003134	Tbc1d8	AD3|HBLP1|VRP	TBC1 domain family, member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-72173205-1	chr5	72173105	72173305	+	790.5	f0_balb.idr	Intergenic	Intergenic	-5016.0	NM_001356614	27784.0	Mm.44223	NM_178599	ENSMUSG00000029213	Commd8	C77770|D5Buc26e	COMM domain containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-121410364-2	chr14	121410264	121410464	+	594.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31134.0	NM_145465	223255.0	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-100676750-2	chr15	100676650	100676850	+	956.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_033612, intron 6 of 7)	intron (NM_033612, intron 6 of 7)	-7250.0	NM_001270537	668218.0	Mm.451225	NM_001270537	ENSMUSG00000098112	Bin2	-	bridging integrator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35170985-4	chr17	35170876	35171076	+	999.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001361501)	TTS (NM_001361501)	5076.0	NM_019467	11629.0	Mm.10747	NM_019467	ENSMUSG00000024397	Aif1	AI607846|AIF-1|D17H6S50E|G1|Iba1	allograft inflammatory factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-112868332-2	chr12	112868232	112868432	+	647.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7416.0	NM_019925	56696.0	Mm.20455	NM_019925	ENSMUSG00000021298	Gpr132	G2a	G protein-coupled receptor 132	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-100684342-2	chr3	100684242	100684442	+	804.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_010763, intron 1 of 12)	intron (NM_010763, intron 1 of 12)	1131.0	NM_010763	17156.0	Mm.271617	NM_010763	ENSMUSG00000008763	Man1a2	AI428775|AI528764|AI854422|Man1b|PCR2	mannosidase, alpha, class 1A, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107963173-2	chr9	107963073	107963273	+	838.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011634, intron 9 of 14)	intron (NM_011634, intron 9 of 14)	12210.0	NM_011634	22036.0	Mm.297870	NM_011634	ENSMUSG00000032586	Traip	Trip	TRAF-interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105394644-2	chr8	105394544	105394744	+	652.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301173, intron 4 of 15)	intron (NM_001301173, intron 4 of 15)	18858.0	NM_177791	279499.0	Mm.67628	NM_177791	ENSMUSG00000051648	Kctd19	4922504H04Rik	potassium channel tetramerisation domain containing 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5568381-4	chr19	5568289	5568489	+	974.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001033448, exon 1 of 2)	5' UTR (NM_001033448, exon 1 of 2)	365.0	NM_001033448	381201.0	Mm.441906	NM_001033448	ENSMUSG00000049562	Ap5b1	Gm962|beta-5	adaptor-related protein complex 5, beta 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-44552015-2	chr1	44551915	44552115	+	748.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028450, intron 1 of 10)	CpG	344.0	NM_028450	70676.0	Mm.133132	NM_027506	ENSMUSG00000056870	Gulp1	3110030A04Rik|5730529O06Rik|CED-6|Ced6|GULP|Gulp-2	GULP, engulfment adaptor PTB domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-70835290-4	chr17	70835210	70835410	+	999.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11467.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-143044170-4	chr5	143044100	143044300	+	928.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359851, intron 12 of 15)	intron (NM_001359851, intron 12 of 15)	68820.0	NM_207110	108086.0	Mm.381440	NM_080561	ENSMUSG00000045078	Rnf216	2810055G22Rik|AI647468|AU019462|C86502|F830018F18Rik|TRIAD3|UIP83|Ubce7ip1	ring finger protein 216	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-104352857-4	chr7	104352719	104352919	+	909.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175677, intron 1 of 7)	URR1A|DNA|hAT-Charlie	530.0	NM_175677	319236.0	Mm.425502	NM_175677	ENSMUSG00000057143	Trim12c	9230105E10Rik|Trim12-2	tripartite motif-containing 12C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-96491896-2	chr9	96491796	96491996	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13221.0	NM_001311135	19823.0	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-80148399-4	chr11	80148325	80148525	+	939.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5737.0	NM_172133	216991.0	Mm.341520	NM_172133	ENSMUSG00000020709	Adap2	Centa2	ArfGAP with dual PH domains 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-72027134-1	chr1	72027034	72027234	+	751.0	f0_balb.idr	Intergenic	Intergenic	-21939.0	NR_040454	71134.0	Mm.370574	NR_040454	ENSMUSG00000101848	4933417E11Rik	-	RIKEN cDNA 4933417E11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167699048-2	chr2	167698948	167699148	+	683.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	7871.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-57581815-4	chr18	57581721	57581921	+	926.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029290, intron 3 of 6)	intron (NM_029290, intron 3 of 6)	-29424.0	NR_015494	75084.0	Mm.243841	NR_015494	ENSMUSG00000086607	4930511M06Rik	-	RIKEN cDNA 4930511M06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-89060821-4	chr11	89060737	89060937	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019505)	promoter-TSS (NM_019505)	86.0	NR_110336	414094.0	Mm.124287	NM_001001497		Dgkeos	A930013B10Rik	diacylglycerol kinase, epsilon, opposite strand	ncRNA	4.54885017383726	4.9180215843756	4.63892179051822	5.00902713549364	4.29042616105895	4.37846977136224	4.23781009987869	4.62901875144357	-0.497451174706038	0.169457812318381	0.63642158770741
Merged-chr7-68830090-3	chr7	68829997	68830197	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-80859.0	NM_025549	66412.0	Mm.251199	NM_025549	ENSMUSG00000042659	Arrdc4	2410003C09Rik|AV216361	arrestin domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-45572593-4	chr17	45572497	45572697	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008302, intron 1 of 10)	CpG	664.0	NM_008302	15516.0	Mm.2180	NM_008302	ENSMUSG00000023944	Hsp90ab1	90kDa|AL022974|C81438|Hsp84|Hsp84-1|Hsp90|Hspcb	heat shock protein 90 alpha (cytosolic), class B member 1	protein-coding	3.38847197195755	1.88128239713611	2.66310222735885	3.3375889833137	2.93137563305585	2.49616629112656	3.00165535146019	2.17766072714363	-0.488988531402834	0.519669958273835	0.947641799425091
Merged-chr15-39969567-2	chr15	39969467	39969667	+	694.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E-int|LTR|ERVL-MaLR	6918.0	NR_045719	105976.0	Mm.394885	NR_045719		AU022793	-	expressed sequence AU022793	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-110753960-3	chr13	110753877	110754077	+	951.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-149522.0	NR_131193	75139.0	Mm.490931	NR_131193	ENSMUSG00000114472	Gm38397	-	predicted gene, 38397	ncRNA	1.14061082280736	1.90097905824141	1.98592905649682	1.1817427342068	2.62131536953577	2.33552205204762	2.13518026856685	2.46636288758816	2.12456064792849	0.0389802571572977	0.281738952397138
Merged-chr18-25505231-5	chr18	25505030	25505230	+	765.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362304, intron 3 of 12)	intron (NM_001362304, intron 3 of 12)	174618.0	NM_001362337	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34659505-2	chr17	34659405	34659605	+	636.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11030.0	NM_031176	81877.0	Mm.290527	NM_031176	ENSMUSG00000033327	Tnxb	Tn-mhc|Tnx	tenascin XB	protein-coding	-1.50543478064258	-1.47321201089866	-1.48295644243373	-1.18431202084952	-1.50317280178647	-1.31777595804547	-1.48075051672605	-1.48952803090694	-0.709722914946356	0.838447947896198	1
Merged-chr18-23890462-1	chr18	23890362	23890562	+	774.0	f0_balb.idr	intron (NM_001162941, intron 7 of 7)	intron (NM_001162941, intron 7 of 7)	-64226.0	NM_027007	69256.0	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-58928341-2	chr2	58928241	58928441	+	633.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001362394, intron 10 of 13)	MLT1E3|LTR|ERVL-MaLR	173157.0	NM_029692	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-116135591-2	chr9	116135491	116135691	+	982.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029575, intron 1 of 6)	intron (NM_029575, intron 1 of 6)	39772.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67204707-2	chr10	67204607	67204807	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_207221, intron 3 of 25)	intron (NM_207221, intron 3 of 25)	18957.0	NM_001242396	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-30675714-2	chr10	30675614	30675814	+	730.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358842, intron 9 of 14)	RMER10A|LTR|ERVL	-19847.0	NM_001111267	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-111311779-2	chr9	111311679	111311879	+	772.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164659)	promoter-TSS (NM_001164659)	40.0	NM_001164659	320429.0	Mm.270754	NM_001164659	ENSMUSG00000062296	Trank1	A230061D21Rik|C030048J01Rik|Gm187|Lba1	tetratricopeptide repeat and ankyrin repeat containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-67109069-1	chr13	67108969	67109169	+	987.0	f1_balb.idr	intron (NM_001256052, intron 2 of 6)	intron (NM_001256052, intron 2 of 6)	4959.0	NM_001256052	432770.0	Mm.124021	NM_001256052	ENSMUSG00000074824	Rslcan18	mszf51	regulator of sex-limitation candidate 18	protein-coding	1.84600273967382	3.39751712968848	3.8354971212565	2.32434934348127	3.25383744471022	1.87008418507626	3.52377660614158	2.33765318014452	-0.289072046976973	0.721761371811986	0.998431161219273
Merged-chr1-16518878-4	chr1	16518910	16519110	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001347044, exon 1 of 14)	5' UTR (NM_001347044, exon 1 of 14)	105.0	NM_001347044	29819.0	Mm.216257	NM_025303	ENSMUSG00000025920	Stau2	-	staufen double-stranded RNA binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-121877455-3	chr8	121877359	121877559	+	968.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30227.0	NM_011404	20539.0	Mm.22374	NM_011404	ENSMUSG00000040010	Slc7a5	4F2LC|D0H16S474E|LAT1|TA1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 5	protein-coding	4.15397078182435	4.367282056127	3.79416481436125	4.85044584396839	1.56960074209563	1.52365600310642	2.03630965286722	1.95063031679439	-4.54970941723314	1.01328390056481e-08	1.23216691611249e-06
Merged-chr12-33334031-2	chr12	33333922	33334122	+	942.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033436, intron 2 of 7)	intron (NM_001033436, intron 2 of 7)	31507.0	NM_001033436	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72881418-4	chr6	72881301	72881501	+	962.866699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019715, intron 1 of 6)	intron (NM_019715, intron 1 of 6)	17891.0	NM_001347231	74287.0	Mm.29194	NM_019715	ENSMUSG00000055239	Kcmf1	1700094M07Rik|Debt91|Pmcf	potassium channel modulatory factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-61702618-4	chr9	61702469	61702669	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	211941.0	NM_018853	56040.0	Mm.3158	NM_018853	ENSMUSG00000007892	Rplp1	2410042H16Rik|Arpp1|C430017H15Rik	ribosomal protein, large, P1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114830190-4	chr11	114830037	114830237	+	916.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21395.0	NM_001110337	70355.0	Mm.242413	NM_147217	ENSMUSG00000051043	Gprc5c	1110028I06Rik|3200002M13Rik|Raig3	G protein-coupled receptor, family C, group 5, member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-56720450-4	chr19	56720356	56720556	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1916.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-85972566-2	chr11	85972466	85972666	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51784.0	NR_046030	629393.0	Mm.372867	NR_046030		Gm20759	-	predicted gene, 20759	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4383488-2	chr16	4383388	4383588	+	776.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_009624, intron 2 of 10)	intron (NM_009624, intron 2 of 10)	37010.0	NM_001291910	11515.0	Mm.439750	NM_009624	ENSMUSG00000005580	Adcy9	AC9|ACtp10|AW125421|D16Wsu65e|mKIAA0520	adenylate cyclase 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-69752182-3	chr12	69752024	69752224	+	630.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183294, intron 7 of 9)	intron (NM_183294, intron 7 of 9)	11820.0	NR_030450	751538.0		NR_030450	ENSMUSG00000076065	Mir681	Mirn681|mmu-mir-681	microRNA 681	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-63924535-6	chr15	63924304	63924504	+	908.904785	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_029414, intron 10 of 10)	intron (NR_029414, intron 10 of 10)	9943.0	NR_029414	74460.0	Mm.390801	NR_029414	ENSMUSG00000100127	Gsdmcl-ps	4933426G20Rik	gasdermin C-like, pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-67202994-2	chr18	67202881	67203081	+	619.5	f0_balb.idr|f1_balb.idr	intron (NM_177137, intron 5 of 11)	intron (NM_177137, intron 5 of 11)	-2378.0	NM_024190	67064.0	Mm.73777	NM_024190	ENSMUSG00000109901	Chmp1b	2810405I11Rik|Chmp1b1	charged multivesicular body protein 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-156811492-1	chr3	156811392	156811592	+	598.0	f1_c57bl6.idr	intron (NM_001039094, intron 1 of 6)	RMER17A2|LTR|ERVK	249698.0	NM_001039094	320840.0	Mm.317293	NM_177274	ENSMUSG00000040037	Negr1	5330422G01Rik|KILON|Ntra	neuronal growth regulator 1	protein-coding	0.717185662809224	1.86420219059073	1.77379181777782	0.336042059785637	0.316688957074329	0.369446989107113	0.352945476567255	0.338376438504192	-5.00291672938097	0.00397072621989671	0.0556984877470624
Merged-chr9-90062079-4	chr9	90061959	90062159	+	856.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007801, intron 3 of 11)	intron (NM_007801, intron 3 of 11)	7792.0	NM_001312649	13036.0	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	2.63878666661226	3.16907518660168	3.76740392128366	4.11447589821092	4.23057346297003	3.66190143223237	4.79408599821543	4.95395315557455	1.30900364483694	0.0120804608920794	0.124756835923824
Merged-chr17-48045692-2	chr17	48045592	48045792	+	558.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7399.0	NM_029689	76651.0	Mm.76918	NM_029689	ENSMUSG00000094928	1700122O11Rik	-	RIKEN cDNA 1700122O11 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-77044579-1	chr13	77044479	77044679	+	550.0	f0_balb.idr	intron (NM_134071, intron 20 of 20)	intron (NM_134071, intron 20 of 20)	90889.0	NM_134071	105377.0	Mm.209730	NM_134071	ENSMUSG00000021597	Slf1	2700017A04Rik|AW545819|Ankrd32|Brctd1|Brctx|C730024G01Rik	SMC5-SMC6 complex localization factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-132011942-4	chr1	132011853	132012053	+	900.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007923, intron 1 of 4)	L1MB8|LINE|L1	4348.0	NM_007923	13714.0	Mm.254233	NM_007923	ENSMUSG00000026436	Elk4	2310011G17Rik|A130026I01Rik|BB162516|SAP-1|Sap1	ELK4, member of ETS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-99630311-4	chr5	99630186	99630386	+	912.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 1 of 3)	intron (NR_030692, intron 1 of 3)	98774.0	NR_030692	319818.0	Mm.295233	NR_030692	ENSMUSG00000089809	A930011G23Rik	-	RIKEN cDNA A930011G23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-8663002-2	chr3	8662902	8663102	+	986.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_010423)	TTS (NM_010423)	4036.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-11001103-2	chr16	11001003	11001203	+	930.375	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER2|LTR|ERV1	-7795.0	NR_040518	100043147.0	Mm.489001	NR_040518	ENSMUSG00000097056	Gm4262	-	predicted gene 4262	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-79529357-2	chr11	79529229	79529429	+	922.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033711, intron 1 of 1)	intron (NM_001033711, intron 1 of 1)	1280.0	NM_146023	101488212.0	Mm.439665	NM_146023	ENSMUSG00000070354	Evi2	Evi2a-evi2b|Gm21975	ecotropic viral integration site 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24221244-1	chr17	24221144	24221344	+	901.0	f1_balb.idr	promoter-TSS (NM_028056)	promoter-TSS (NM_028056)	-393.0	NM_028056	72016.0	Mm.23881	NM_028056	ENSMUSG00000024118	Tedc2	1600002H07Rik	tubulin epsilon and delta complex 2	protein-coding	2.28259653996962	2.68286714060356	1.8788945461339	1.36803455860585	2.40556456676549	2.58737565111512	3.18454453897503	2.62891850648906	1.26047907529748	0.142526581580058	0.589531346517191
Merged-chr2-164746018-4	chr2	164745943	164746143	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133763)	promoter-TSS (NM_133763)	28.0	NM_133763	76233.0	Mm.440009	NM_133763	ENSMUSG00000017299	Dnttip1	6430706C13Rik	deoxynucleotidyltransferase, terminal, interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-122520510-4	chr7	122520400	122520600	+	890.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316672, intron 7 of 16)	intron (NM_001316672, intron 7 of 16)	-151244.0	NM_019430	54376.0	Mm.444212	NM_019430	ENSMUSG00000066189	Cacng3	-	calcium channel, voltage-dependent, gamma subunit 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-41828795-1	chr13	41828695	41828895	+	610.0	f0_balb.idr	intron (NM_001145875, intron 1 of 6)	intron (NM_001145875, intron 1 of 6)	18693.0	NM_175417	109254.0	Mm.25195	NM_175417	ENSMUSG00000058022	Adtrp	9530008L14Rik	androgen dependent TFPI regulating protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-12160966-4	chr5	12160844	12161044	+	921.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-222222.0	NM_028882	108151.0	Mm.89313	NM_028882	ENSMUSG00000040254	Sema3d	4631426B19Rik	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-87747170-2	chr11	87747070	87747270	+	602.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9619.0	NM_009296	20922.0	Mm.622	NM_009296	ENSMUSG00000020485	Supt4a	AL022777|Supt4h|Supt4h1|Supt4h1a	suppressor of Ty 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25779292-2	chr7	25779192	25779392	+	849.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009465, intron 4 of 19)	RMER10A|LTR|ERVL	9441.0	NM_001190974	26362.0	Mm.4128	NM_009465	ENSMUSG00000002602	Axl	AI323647|Ark|Tyro7|Ufo	AXL receptor tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-17250174-8	chr19	17250066	17250266	+	840.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	89339.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	2.60153277111547	2.52376846074307	2.81997056003869	3.64431514934174	2.97071671063885	2.54228040295874	2.727362875111	2.75527978534547	-0.427470315216652	0.541220960771821	0.954866069207078
Merged-chr19-41263448-4	chr19	41263364	41263564	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133352, intron 1 of 14)	CpG	540.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	4.49283939830332	4.39187135718502	5.16799819490057	4.58823717252567	4.31965327177783	4.59573140855252	4.08945751632478	4.27149509479154	-0.469925048170614	0.22340252111472	0.714791840691861
Merged-chr10-69165187-2	chr10	69165087	69165287	+	614.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43365.0	NM_001252636	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-79874482-3	chr10	79874399	79874599	+	807.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033210, exon 1 of 6)	non-coding (NR_033210, exon 1 of 6)	135.0	NM_181681	216152.0	Mm.29678	NM_181681	ENSMUSG00000035835	Plppr3	Lppr3|Prg2	phospholipid phosphatase related 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-63989909-4	chr7	63989818	63990018	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-51003.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	5.83303145586151	5.31558009864866	5.65443472284814	5.74653842355961	4.83124242688321	4.7302231606647	4.68506038340286	5.39173808441091	-0.822061332707707	0.00631473284868018	0.0793619043838668
Merged-chr6-82985214-3	chr6	82985117	82985317	+	864.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033079, intron 4 of 9)	RLTR20A3_MM|LTR|ERVK	38295.0	NM_033079	110958.0	Mm.100652	NM_033079	ENSMUSG00000030041	M1ap	D6Mm5e	meiosis 1 associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-124247729-4	chr8	124247641	124247841	+	904.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139272, intron 1 of 15)	MTD|LTR|ERVL-MaLR	16347.0	NM_139272	108148.0	Mm.33808	NM_139272	ENSMUSG00000089704	Galnt2	AI480629	polypeptide N-acetylgalactosaminyltransferase 2	protein-coding	4.12692118710365	4.53978314571292	2.93691638300347	4.79417864372206	3.51696595807071	3.47378575153875	4.38208758606882	4.15276134190032	-0.434088156153261	0.403427763733588	0.888785587454204
Merged-chr14-73058023-2	chr14	73057923	73058123	+	656.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8909.0	NM_001162412	70086.0	Mm.158324	NM_133720	ENSMUSG00000033470	Cysltr2	2300001H05Rik|CYSLT2R|Cltr2|Cyslt2	cysteinyl leukotriene receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-23749955-1	chr13	23749855	23750055	+	579.0	f1_c57bl6.idr	Intergenic	Intergenic	-1133.0	NM_175660	319172.0	Mm.423402	NM_175660	ENSMUSG00000061615	Hist1h2ab	H2A.1|H2a-53	histone cluster 1, H2ab	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-40218186-2	chr12	40218086	40218286	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013562, intron 1 of 11)	B1F|SINE|Alu	4625.0	NR_035459	100316693.0		NR_035459	ENSMUSG00000089371	Mir1938	mir-1938|mmu-mir-1938	microRNA 1938	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91408781-2	chr16	91408681	91408881	+	767.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_008349, intron 2 of 6)	MTEb|LTR|ERVL-MaLR	2546.0	NM_008349	16155.0	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-45919150-4	chr1	45919081	45919281	+	725.958313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016917, intron 3 of 7)	intron (NM_016917, intron 3 of 7)	6413.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19021677-2	chr7	19021577	19021777	+	634.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_008260, intron 1 of 1)	(T)n|Simple_repeat|Simple_repeat	1862.0	NM_008260	15377.0	Mm.42260	NM_008260	ENSMUSG00000040891	Foxa3	Hnf-3g|Hnf3g|Tcf-3g|Tcf3g	forkhead box A3	protein-coding	-0.585750136378803	-0.574740085344961	-0.578352923889335	-0.0496394507928595	-0.585064430927764	-0.573924946871814	-0.577556558535478	-0.0428439794746447	0.0283831331496041	0.992068125565279	1
Merged-chr12-85390512-2	chr12	85390412	85390612	+	969.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-15795.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-125663601-2	chr8	125663501	125663701	+	787.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6217.0	NM_028908	74393.0	Mm.41709	NM_028908	ENSMUSG00000050930	Map10	4933403G14Rik|AI835009|mKIAA1383	microtubule-associated protein 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-95743214-2	chr16	95743114	95743314	+	857.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MEc|LINE|L1	40807.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-34093947-2	chr16	34093847	34094047	+	823.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177357, intron 34 of 59)	intron (NM_177357, intron 34 of 59)	-126909.0	NM_009471	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-132697702-2	chr2	132697602	132697802	+	642.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028637, intron 2 of 2)	(TG)n|Simple_repeat|Simple_repeat	7104.0	NM_028637	73747.0	Mm.284114	NM_028637	ENSMUSG00000044991	1110034G24Rik	-	RIKEN cDNA 1110034G24 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-128659295-2	chr4	128659195	128659395	+	556.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001195130, intron 1 of 14)	intron (NM_001195130, intron 1 of 14)	4593.0	NM_001195130	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-27155073-2	chr3	27154973	27155173	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_040548, intron 2 of 2)	intron (NR_040548, intron 2 of 2)	1047.0	NR_040548	76657.0	Mm.417839	NR_040548	ENSMUSG00000097584	1700125G22Rik	-	RIKEN cDNA 1700125G22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-79223156-1	chr15	79223056	79223256	+	672.0	f1_c57bl6.idr	Intergenic	Intergenic	-6017.0	NM_008837	18693.0	Mm.259464	NM_008837	ENSMUSG00000068206	Pick1	Prkcabp	protein interacting with C kinase 1	protein-coding	-1.22915060970067	-1.20283889872473	-1.21346133762366	-1.05883428008781	-1.22869714442646	-1.20053697190277	-0.753678471328647	-1.22062504920339	1.43421633794309	0.667093555748306	1
Merged-chr6-54080476-1	chr6	54080376	54080576	+	565.0	f0_balb.idr	intron (NM_001163640, intron 1 of 12)	intron (NM_001163640, intron 1 of 12)	40544.0	NM_001163640	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114676585-4	chr11	114676573	114676773	+	941.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053273, intron 1 of 13)	intron (NM_053273, intron 1 of 13)	1205.0	NM_053273	117160.0	Mm.271934	NM_053273	ENSMUSG00000034714	Ttyh2	1110001A03Rik	tweety family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16019629-4	chr7	16019507	16019707	+	952.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28B|LTR|ERVL	-20112.0	NM_001081418	243842.0	Mm.440249	NM_001081418	ENSMUSG00000070808	Bicra	Gltscr1	BRD4 interacting chromatin remodeling complex associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101881090-2	chr7	101880990	101881190	+	674.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291353)	promoter-TSS (NM_001291353)	-235.0	NM_001291353	75430.0	Mm.284491	NM_027532	ENSMUSG00000030649	Anapc15	3200002M19Rik|6330414C15Rik|APC15	anaphase prompoting complex C subunit 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-47649613-2	chr6	47649513	47649713	+	976.625	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5481.0	NR_002841	19799.0		NR_002841		Rn4.5s	-	4.5S RNA	rRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-56398511-4	chr19	56398418	56398618	+	913.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007611, intron 1 of 6)	MTD|LTR|ERVL-MaLR	1389.0	NM_007611	12369.0	Mm.35687	NM_007611	ENSMUSG00000025076	Casp7	AI314680|CMH-1|ICE-IAP3|Mch3|caspase-7|mCASP-7	caspase 7	protein-coding	1.71599592671577	1.20004278432623	1.15871405764769	1.12501370688714	3.06121960593809	2.78498423376778	2.47684896599069	3.21984506194083	4.19815303623905	0.000182919510789683	0.00501623094990403
Merged-chr14-36968805-4	chr14	36968695	36968895	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027045)	promoter-TSS (NM_027045)	-31.0	NM_027045	72972.0	Mm.27621	NM_027045	ENSMUSG00000058690	Ccser2	1700012P13Rik|2900054P12Rik|AI035535|AW108503|Fam190b|Gcap14	coiled-coil serine rich 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-182409047-4	chr1	182408930	182409130	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173378)	promoter-TSS (NM_173378)	-137.0	NM_173378	209456.0	Mm.287450	NM_173378	ENSMUSG00000026510	Trp53bp2	53BP2|AI746547|ASPP2|PPP1R13A|Tp53bp2|X98550	transformation related protein 53 binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-7333617-3	chr10	7333530	7333730	+	929.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-121393.0	NM_172546	215748.0	Mm.37984	NM_172546	ENSMUSG00000015202	Cnksr3	6820402C05|BC024086|Magi1	Cnksr family member 3	protein-coding	0.476655749615685	0.517431385013811	0.504387599907739	0.494121472737596	0.964223951297446	1.70768103176268	0.920697864069828	1.47398029756802	4.8614484651632	0.00305470304489127	0.0459661293469131
Merged-chr5-122281370-4	chr5	122281261	122281461	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3037.0	NM_177242	320717.0	Mm.489670	NM_177242	ENSMUSG00000038582	Pptc7	9130017A15Rik|AA672638|AI848390|TA-PP2C	PTC7 protein phosphatase homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106776342-2	chr11	106776242	106776442	+	944.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001353435, intron 3 of 7)	AT_rich|Low_complexity|Low_complexity	3124.0	NM_001353435	50776.0	Mm.859	NM_015810	ENSMUSG00000020718	Polg2	mtPolB|p55|polG-beta	polymerase (DNA directed), gamma 2, accessory subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-69662358-4	chr18	69662255	69662455	+	981.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 15 of 19)	intron (NM_001361128, intron 15 of 19)	-263204.0	NM_201362	381175.0	Mm.266831	NM_201362	ENSMUSG00000038903	Ccdc68	BC046343	coiled-coil domain containing 68	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-3159816-2	chr11	3159708	3159908	+	1000.0	f0_balb.idr|f1_balb.idr	intron (NM_030207, intron 10 of 32)	MTD|LTR|ERVL-MaLR	33655.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-104290379-2	chr13	104290279	104290479	+	588.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_136938, intron 1 of 26)	intron (NR_136938, intron 1 of 26)	2544.0	NM_001081020	108154.0	Mm.208125	NM_175496	ENSMUSG00000046169	Adamts6	A930019D11Rik|ADAM-TS6|b2b1879.1Clo|b2b2029Clo|b2b2182Clo|b2b2187.1Clo|b2b2228Clo	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45091377-3	chr7	45091330	45091530	+	954.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355045, intron 2 of 6)	intron (NM_001355045, intron 2 of 6)	783.0	NM_026555	52377.0	Mm.29997	NM_026555	ENSMUSG00000019539	Rcn3	6030455P07Rik|D530026G20Rik|D7Ertd671e|RLP49	reticulocalbin 3, EF-hand calcium binding domain	protein-coding	2.87008002313659	3.74408707268473	2.75520848280006	3.21873857120116	2.89474663096258	3.77018686705554	3.24370201647959	3.73235272855727	0.408516498266112	0.49631124966452	0.936771217641569
Merged-chr14-61328130-1	chr14	61328030	61328230	+	701.799988	f0_balb.idr	Intergenic	Intergenic	18377.0	NM_177337	219144.0	Mm.206566	NM_177337	ENSMUSG00000043157	Arl11	ARLTS1|C730007L20Rik	ADP-ribosylation factor-like 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-34391523-2	chr7	34391423	34391623	+	955.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1818.0	NM_025948	67070.0	Mm.276503	NM_025948	ENSMUSG00000066568	Lsm14a	2700023B17Rik|AA407828|AU017544|Tral|mRAP55A	LSM14A mRNA processing body assembly factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133968813-2	chr4	133968846	133969046	+	862.0	f0_balb.idr|f1_balb.idr	promoter-TSS (NM_016957)	promoter-TSS (NM_016957)	-955.0	NM_016957	15331.0	Mm.319660	NM_016957	ENSMUSG00000003038	Hmgn2	HMG-17|Hmg17	high mobility group nucleosomal binding domain 2	protein-coding	0.875867835295156	0.200037681012718	0.509870537360147	0.348686955437261	0.446807738698344	0.550507233351215	0.19551660641261	0.190548667019771	-1.10940916492509	0.555765962042792	1
Merged-chr6-34935557-2	chr6	34935457	34935657	+	590.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009292, intron 6 of 8)	intron (NM_009292, intron 6 of 8)	14609.0	NM_009292	20899.0	Mm.5171	NM_009292	ENSMUSG00000029848	Stra8	-	stimulated by retinoic acid gene 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-72581225-4	chr14	72581117	72581317	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207636, intron 7 of 25)	intron (NM_207636, intron 7 of 25)	128786.0	NM_207636	319448.0	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-43826764-2	chr1	43826664	43826864	+	642.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026430, intron 1 of 14)	intron (NM_026430, intron 1 of 14)	944.0	NM_026430	67883.0	Mm.387202	NM_026430	ENSMUSG00000057363	Uxs1	1600025I13Rik|AI451869|AI649125|AW550562	UDP-glucuronate decarboxylase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-152437681-4	chr2	152437575	152437775	+	992.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110368, intron 6 of 10)	intron (NR_110368, intron 6 of 10)	22088.0	NR_110368	228778.0	Mm.70959	NM_177656	ENSMUSG00000032680	6820408C15Rik	-	RIKEN cDNA 6820408C15 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80117203-6	chr10	80117132	80117332	+	850.7777710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301853, intron 1 of 8)	CpG	1429.0	NM_001301854	20869.0	Mm.44231	NM_011492	ENSMUSG00000003068	Stk11	AA408040|Lkb1|Par-4|R75140	serine/threonine kinase 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-134727292-4	chr5	134727165	134727365	+	947.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007925, intron 10 of 36)	intron (NM_007925, intron 10 of 36)	20058.0	NM_007925	13717.0	Mm.275320	NM_007925	ENSMUSG00000029675	Eln	AI385707|AI480567|E030024M20Rik	elastin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-136140492-4	chr4	136140410	136140610	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3312.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150212659-4	chr4	150212591	150212791	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20B1|LTR|ERVK	-11556.0	NM_009802	12353.0	Mm.232523	NM_009802	ENSMUSG00000028972	Car6	Ca6|DOC1	carbonic anhydrase 6	protein-coding	7.16545436715311	6.4922264011324	6.70850911874354	6.5542448451335	6.43976552657542	6.49442984030593	6.9071271753333	6.70484759301401	-0.123547153606495	0.55616970064685	0.960313897742752
Merged-chr15-30740923-4	chr15	30740826	30741026	+	866.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355502, intron 9 of 21)	intron (NM_001355502, intron 9 of 21)	-298200.0	NR_045186	73784.0	Mm.66947	NR_045186	ENSMUSG00000115474	4930430F21Rik	-	RIKEN cDNA 4930430F21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-24686400-4	chr5	24686291	24686491	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305264, intron 1 of 14)	intron (NM_001305264, intron 1 of 14)	576.0	NM_001305264	53312.0	Mm.5856	NM_016736	ENSMUSG00000028954	Nub1	4931404D21Rik|6330412F12Rik|BS4|NY-REN-18	negative regulator of ubiquitin-like proteins 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-105862014-5	chr3	105861932	105862132	+	992.7333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8826.0	NM_027025	69296.0	Mm.235024	NM_027025	ENSMUSG00000000562	Tmigd3	1700001d09rik|4930578J19Rik|Tg(H2-K-CALR*)del52Shmd	transmembrane and immunoglobulin domain containing 3	protein-coding	2.15088352051932	3.00954091125503	2.45118430328366	2.67119418070099	2.55608206106704	1.45008714761566	2.2143738907267	2.1471252223685	-0.984686482170116	0.252616743378081	0.750119406264342
Merged-chr5-65765103-4	chr5	65765003	65765203	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024917, intron 1 of 19)	intron (NM_001024917, intron 1 of 19)	1582.0	NM_001024917	333789.0	Mm.332398	NM_001024917	ENSMUSG00000037795	N4bp2	B3bp|E430014I16|Gm1791|Gm868	NEDD4 binding protein 2	protein-coding	3.69372624589665	4.19675234626169	4.23692649224849	3.51586920948772	3.72425433950656	4.22590215759151	4.71998796349257	3.44438311109412	0.238570498170966	0.6259175490512	0.980912176761026
Merged-chr8-84739524-1	chr8	84739424	84739624	+	857.0	f0_balb.idr	intron (NM_001081982, intron 2 of 9)	intron (NM_001081982, intron 2 of 9)	34845.0	NM_001081981	18032.0	Mm.9394	NM_010906	ENSMUSG00000001911	Nfix	CTF|NF-I/X|NF1-X|NFI-X	nuclear factor I/X	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-94605772-2	chr16	94605672	94605872	+	809.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113389, intron 1 of 11)	intron (NM_001113389, intron 1 of 11)	-5647.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-30652390-3	chr5	30652293	30652493	+	862.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175675, intron 1 of 5)	RMER17C|LTR|ERVK	4454.0	NM_175675	74919.0	Mm.247985	NM_175675	ENSMUSG00000029175	Slc35f6	4930471M23Rik|5730478O19Rik|ANT2BP|P40|Tango9	solute carrier family 35, member F6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-12794840-4	chr19	12794729	12794929	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053009, intron 1 of 10)	CpG	1294.0	NR_024093	664779.0	Mm.290924	NM_001039718	ENSMUSG00000024695	Gm44505	Zfp91-Cntf|Zfp91Cntf	predicted readthrough transcript (NMD candidate), 44505	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-111175604-2	chr8	111175504	111175704	+	660.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009149, intron 12 of 25)	B4|SINE|B4	-30106.0	NR_040364	434350.0	Mm.442061	NR_040363		9430091E24Rik	-	RIKEN cDNA 9430091E24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-20358061-4	chr16	20357966	20358166	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013790, intron 24 of 29)	intron (NM_013790, intron 24 of 29)	-32662.0	NM_183158	224044.0	Mm.276400	NM_183158	ENSMUSG00000022818	Cyp2ab1	EG224044|F730023N20	cytochrome P450, family 2, subfamily ab, polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-9135206-2	chr15	9135106	9135306	+	736.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013787, intron 2 of 9)	intron (NM_013787, intron 2 of 9)	5248.0	NM_013787	27401.0	Mm.35584	NM_013787	ENSMUSG00000054115	Skp2	4930500A04Rik|FBXL1|FWD1|p45	S-phase kinase-associated protein 2 (p45)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117081852-4	chr11	117081748	117081948	+	840.5750119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4500.0	NR_105853	102465258.0		NR_105853	ENSMUSG00000104740	Mir6516	mmu-mir-6516	microRNA 6516	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105930480-2	chr8	105930380	105930580	+	788.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_173432, exon 3 of 3)	3' UTR (NM_173432, exon 3 of 3)	3382.0	NM_023182	109660.0	Mm.2745	NM_023182	ENSMUSG00000031896	Ctrl	0910001G08Rik|1810004D15Rik|AV005227|Ctra-1|Ctra1|chymopasin|mFLJ00366	chymotrypsin-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97713795-1	chr11	97713695	97713895	+	578.0	f1_c57bl6.idr	TTS (NM_011971)	TTS (NM_011971)	10361.0	NM_011971	26446.0	Mm.21874	NM_011971	ENSMUSG00000069744	Psmb3	AL033320|C10-II	proteasome (prosome, macropain) subunit, beta type 3	protein-coding	-0.462568745007129	0.423388656171049	-0.452781542840528	-0.456449457143365	-0.0475509661640267	-0.44698313076835	-0.451735458312232	-0.455807707016715	-1.47303757300298	0.582784000060011	1
Merged-chr18-46369957-2	chr18	46369857	46370057	+	552.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	-58029.0	NM_001160399	240261.0	Mm.329416	NM_001160399	ENSMUSG00000071855	Ccdc112	8430438M01Rik|AW108467	coiled-coil domain containing 112	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-125579184-1	chr7	125579084	125579284	+	953.5	f1_c57bl6.idr	3' UTR (NM_001008700, exon 11 of 11)	3' UTR (NM_001008700, exon 11 of 11)	-24245.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	1.63994824939181	0.781012257680697	1.52987631038637	0.757554915452411	1.49580582485453	1.35191086514322	1.15349497766924	0.759364524538552	-0.126330978622593	0.931242899291607	0.998431161219273
Merged-chr4-132620123-3	chr4	132620028	132620228	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-18918.0	NM_210071	14050.0	Mm.227733	NM_010166	ENSMUSG00000028886	Eya3	AI844637	EYA transcriptional coactivator and phosphatase 3	protein-coding	4.53843371666984	4.94854841191375	4.33604639436502	4.49436190091162	3.56409533499863	3.44272743960965	4.20354820443191	1.75871074595133	-1.48836791282039	0.00624414297174078	0.0787497134284645
Merged-chr3-94811829-2	chr3	94811729	94811929	+	546.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-25314.0	NM_001037711	70737.0	Mm.87634	NM_001037711	ENSMUSG00000068876	Cgn	6330408J11Rik	cingulin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-167235359-2	chr1	167235259	167235459	+	809.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030724, intron 3 of 6)	intron (NM_030724, intron 3 of 6)	49768.0	NM_030724	80914.0	Mm.280895	NM_030724	ENSMUSG00000026558	Uck2	AA407809|AI481316|AU018180|AU020720|TSA903|UK|UMK|Umpk	uridine-cytidine kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-57837180-5	chr1	57837076	57837276	+	806.6309809999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144882, intron 3 of 13)	intron (NM_144882, intron 3 of 13)	-8395.0	NM_001164566	67198.0	Mm.159989	NM_144882	ENSMUSG00000038305	Spats2l	2810022L02Rik|A230104H11Rik|AA987173|AI480531|AI842453|AW413586	spermatogenesis associated, serine-rich 2-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-55357478-4	chr18	55357375	55357575	+	881.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-364884.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	1.7127585722189	2.57115745810923	2.15138050175008	2.57657130405225	1.14698319900509	2.68555572018396	1.21839961956618	2.09867258070957	-0.778682323319061	0.461021351418843	0.920953234475195
Merged-chr11-19839126-4	chr11	19839019	19839219	+	987.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-85323.0	NM_033523	114716.0	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding	-0.126439497922938	-0.110148216645859	0.663089687178095	-0.119591454264278	0.154624699004696	-0.108948832304927	0.360439789228472	-0.118871852400248	-0.358372330235342	0.876665456275291	1
Merged-chr18-16252127-5	chr18	16252043	16252243	+	832.866638	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-534097.0	NM_199055	71367.0	Mm.329304	NM_199055	ENSMUSG00000047161	Chst9	5430438D01Rik	carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-119230794-4	chr12	119230686	119230886	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177290, intron 1 of 13)	intron (NM_177290, intron 1 of 13)	7490.0	NM_177290	320910.0	Mm.217000	NM_177290	ENSMUSG00000025321	Itgb8	4832412O06Rik	integrin beta 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-47989929-2	chr8	47989829	47990029	+	917.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_133791, intron 1 of 22)	CpG	622.0	NM_133791	52357.0	Mm.235074	NM_133791	ENSMUSG00000031563	Wwc2	5330431C14Rik|AU022508|C85457|D8Ertd594e	WW, C2 and coiled-coil domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-158606613-3	chr2	158606514	158606714	+	855.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040358, intron 1 of 2)	intron (NR_040358, intron 1 of 2)	4109.0	NR_040358	100045469.0	Mm.143404	NR_040358	ENSMUSG00000086496	Gm14204	-	predicted gene 14204	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-104067606-4	chr12	104067515	104067715	+	899.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10344.0	NR_002861	321018.0	Mm.297023	NR_002861		Serpina4-ps1	KALps|Klst	serine (or cysteine) peptidase inhibitor, clade A, member 4, pseudogene 1	pseudo	1.87165925303457	1.5245684785541	2.5064126461641	2.18549569704552	0.94815205562869	2.36495139688535	1.00710802917319	0.983534982933697	-1.49897520556041	0.225537941421621	0.717692251401288
Merged-chr2-116999022-3	chr2	116998925	116999125	+	727.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	98873.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	1.57428617060251	1.1197703638153	1.51389587607031	0.88742456085705	1.29660389401394	1.45226709939196	1.26203781760755	1.47709474708579	0.240191376195842	0.84772235767269	0.998431161219273
Merged-chr2-84488051-3	chr2	84487942	84488142	+	846.75	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	HAL1|LINE|L1	-11267.0	NM_001177320	21788.0	Mm.124316	NM_011576	ENSMUSG00000027082	Tfpi	A630013F22Rik|AW552122|EPI|LACI	tissue factor pathway inhibitor	protein-coding	2.0776327648754	2.54350878425735	2.61018288691373	2.09537203406578	1.63412314046311	1.16411206694436	1.13647267225072	1.55152273961368	-2.81994086134073	0.00912497384932884	0.101874785587079
Merged-chr4-141562451-4	chr4	141562346	141562546	+	978.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16284.0	NR_030695	320456.0	Mm.32859	NM_177163		B330016D10Rik	-	RIKEN cDNA B330016D10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-23683047-2	chr13	23682881	23683081	+	832.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_178189)	TTS (NM_178189)	978.0	NM_178189	319164.0	Mm.261973	NM_178189	ENSMUSG00000069270	Hist1h2ac	-	histone cluster 1, H2ac	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-96706153-2	chr9	96706053	96706253	+	584.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359959, intron 2 of 2)	intron (NM_001359959, intron 2 of 2)	13292.0	NM_001359960	245007.0	Mm.485954	NM_175537	ENSMUSG00000040433	Zbtb38	A930014K01Rik|CIBZ	zinc finger and BTB domain containing 38	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-46276063-2	chr11	46275963	46276163	+	889.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252459, intron 8 of 30)	PB1D7|SINE|Alu	36295.0	NM_001252460	76884.0	Mm.154358	NM_133769	ENSMUSG00000020340	Cyfip2	1500004I01Rik|6430511D02Rik|AA930218|AU022376|Pir121|mKIAA1168	cytoplasmic FMR1 interacting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120395501-1	chr11	120395401	120395601	+	563.0	f1_balb.idr	intron (NM_199469, intron 12 of 15)	B1_Mus1|SINE|Alu	-16755.0	NM_027980	71885.0	Mm.274890	NM_027980	ENSMUSG00000025384	Faap100	2310003H01Rik	Fanconi anemia core complex associated protein 100	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-30593574-2	chr16	30593474	30593674	+	900.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5985.0	NM_178069	224092.0	Mm.567	NM_178069	ENSMUSG00000022538	Lsg1	5830465I20|AA409273|D16Bwg1547e	large 60S subunit nuclear export GTPase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-117837122-2	chr5	117837022	117837222	+	998.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29717.0	NM_008712	18125.0	Mm.44249	NM_008712	ENSMUSG00000029361	Nos1	2310005C01Rik|N-NOS|NC-NOS|NO|NOS|NOS-I|Nos-1|bNOS|nNOS	nitric oxide synthase 1, neuronal	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124805336-1	chr6	124805236	124805436	+	1000.0	f0_c57.idr	Intergenic	PB1D10|SINE|Alu	-3325.0	NM_001306051	14794.0	Mm.261906	NM_013539	ENSMUSG00000038451	Spsb2	AI461677|C9|Grcc9|SSB2	splA/ryanodine receptor domain and SOCS box containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33641984-4	chr16	33641891	33642091	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083902, intron 8 of 11)	intron (NM_001083902, intron 8 of 11)	-42475.0	NM_175256	77446.0	Mm.245741	NM_172934	ENSMUSG00000075254	Heg1	4632417D23Rik|5530401I02Rik|9530025L16Rik|BC038614|Gm629	heart development protein with EGF-like domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-41468868-2	chr13	41468769	41468969	+	829.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111324, intron 1 of 7)	intron (NM_001111324, intron 1 of 7)	18491.0	NM_001111324	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	-1.32440223303897	-1.29339468673833	-0.717877708899544	-1.31276353204239	-1.32392690786997	-1.29109028300231	-1.30162128075409	-1.31119997543009	-2.49510383040271	0.470258445164311	1
Merged-chr3-10277225-2	chr3	10277125	10277325	+	728.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029310, intron 1 of 5)	intron (NM_029310, intron 1 of 5)	-22973.0	NM_001357160	75497.0	Mm.47052	NM_029310	ENSMUSG00000027530	Fabp12	1700008G05Rik	fatty acid binding protein 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-29649904-4	chr2	29649818	29650018	+	818.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054050, intron 1 of 23)	intron (NM_054050, intron 1 of 23)	30198.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-44635448-4	chr10	44635416	44635616	+	926.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-176768.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44258464-4	chr9	44258366	44258566	+	946.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178420, intron 6 of 9)	CT-rich|Low_complexity|Low_complexity	-7002.0	NM_133226	170761.0	Mm.29872	NM_133226	ENSMUSG00000032105	Pdzd3	NaPi-Cap2|Pdzk2	PDZ domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-48995177-2	chr13	48995077	48995277	+	870.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27065.0	NR_015601	68128.0	Mm.426304	NR_015601		Fam120aos	C030044B11Rik	family with sequence similarity 120A, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-111334125-1	chr10	111334025	111334225	+	852.0	f1_balb.idr	Intergenic	URR1B|DNA|hAT-Charlie	35446.0	NM_027914	71769.0	Mm.45256	NM_027914	ENSMUSG00000035759	Bbs10	1300007O09Rik|AI452285	Bardet-Biedl syndrome 10 (human)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-79370826-4	chr2	79370724	79370924	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001048176, intron 2 of 12)	intron (NM_001048176, intron 2 of 12)	58164.0	NM_001048176	228094.0	Mm.440704	NM_001033295	ENSMUSG00000075256	Cerkl	Gm1958|Rp26	ceramide kinase-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-97663022-3	chr4	97662940	97663140	+	803.56665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122952, intron 1 of 10)	intron (NM_001122952, intron 1 of 10)	-78449.0	NR_015513	319865.0	Mm.373807	NM_177023		E130114P18Rik	-	RIKEN cDNA E130114P18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-23591835-4	chr16	23591705	23591905	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18114.0	NM_023386	67775.0	Mm.475107	NM_023386	ENSMUSG00000033355	Rtp4	5830458K16Rik|Ifrg28	receptor transporter protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-86952269-2	chr17	86952169	86952369	+	752.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4382.0	NM_029121	74915.0	Mm.159369	NM_029121	ENSMUSG00000053375	Atp6v1e2	4930500C14Rik|Atp6e1|E1	ATPase, H+ transporting, lysosomal V1 subunit E2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-60757221-3	chr10	60757123	60757323	+	862.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4441.0	NM_023596	71279.0	Mm.284462	NM_023596	ENSMUSG00000020100	Slc29a3	4933435C21Rik|AW987637|Ent3	solute carrier family 29 (nucleoside transporters), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-27372969-2	chr14	27372869	27373069	+	864.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027871, intron 3 of 10)	intron (NM_027871, intron 3 of 10)	11580.0	NM_001289688	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-32166607-2	chr19	32166507	32166707	+	756.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 5 of 9)	(A)n|Simple_repeat|Simple_repeat	44406.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-66985834-4	chr3	66985739	66985939	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356273)	promoter-TSS (NM_001356273)	-128.0	NM_001356273	66880.0	Mm.316418	NM_025822	ENSMUSG00000034544	Rsrc1	1200013F24Rik|SRrp53	arginine/serine-rich coiled-coil 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84067313-4	chr8	84067208	84067408	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009055, intron 1 of 20)	CpG	472.0	NM_009055	19724.0	Mm.7892	NM_009055	ENSMUSG00000031706	Rfx1	AI047719|AI385641	regulatory factor X, 1 (influences HLA class II expression)	protein-coding	3.81422148996912	2.89496952379508	4.65137626448644	4.45566430363238	3.78586981640877	4.16147077921305	3.96136091600407	4.03294982285364	-0.174449449516009	0.72697406818643	0.998431161219273
Merged-chr6-114457539-4	chr6	114457430	114457630	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001317124)	promoter-TSS (NM_001317124)	-992.0	NM_001317124	15465.0	Mm.333327	NM_008285	ENSMUSG00000053004	Hrh1	Bphs|H1R|HH1R|Hir	histamine receptor H1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-30660338-4	chr13	30660214	30660414	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134068, intron 1 of 7)	intron (NM_134068, intron 1 of 7)	255.0	NM_134068	105352.0	Mm.289646	NM_134068	ENSMUSG00000069255	Dusp22	JKAP|JSP1|LMW-DSP2|MKPX	dual specificity phosphatase 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-8511207-4	chr12	8511123	8511323	+	967.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1H2|LTR|ERVL-MaLR	-11214.0	NM_007483	11852.0	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-87363887-3	chr3	87363759	87363959	+	650.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009690, intron 2 of 5)	B1_Mm|SINE|Alu	5978.0	NM_009690	11801.0	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	2.43389964073778	2.94089425717399	1.43381741542821	2.66856151927699	3.05992627291191	2.51111434872284	1.71399483887814	3.01378991070124	0.400579221764161	0.647072611500947	0.98464241051683
Merged-chr5-123891183-4	chr5	123891052	123891252	+	967.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11132.0	NM_175520	243270.0	Mm.33362	NM_175520	ENSMUSG00000049241	Hcar1	Gpr81	hydrocarboxylic acid receptor 1	protein-coding	2.82201448887726	3.25812630300271	2.74025898144675	2.3943401692131	2.84566503332156	3.78213162872224	2.98628461042617	2.40707930369198	0.473147222777162	0.494722909195653	0.935679785535167
Merged-chr5-103706199-4	chr5	103706112	103706312	+	860.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47950.0	NM_133919	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-70872279-4	chr6	70872188	70872388	+	985.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010121, intron 2 of 16)	intron (NM_010121, intron 2 of 16)	27773.0	NM_001313918	13666.0	Mm.247167	NM_010121	ENSMUSG00000031668	Eif2ak3	Pek|Perk	eukaryotic translation initiation factor 2 alpha kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-144044442-2	chr2	144044342	144044542	+	838.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001044750, intron 1 of 2)	intron (NM_001044750, intron 1 of 2)	11340.0	NM_207275	403171.0	Mm.389362	NM_207275	ENSMUSG00000037307	Banf2	4930517K23Rik|Baf-L|Baf-like|Gm115	barrier to autointegration factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-156448276-1	chr1	156448176	156448376	+	556.0	f1_balb.idr	intron (NM_009230, intron 3 of 15)	intron (NM_009230, intron 3 of 15)	26052.0	NM_009230	20652.0	Mm.28099	NM_009230	ENSMUSG00000026600	Soat1	8430426K15Rik|ACAT-1|AW550831|Acact|ald|hid	sterol O-acyltransferase 1	protein-coding	-1.32440223303897	-1.29339468673833	-0.717877708899544	-1.31276353204239	-1.32392690786997	-1.29109028300231	-1.30162128075409	-1.31119997543009	-2.49510383040271	0.470258445164311	1
Merged-chr14-54714289-4	chr14	54714182	54714382	+	956.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2108.0	NM_207131	110794.0	Mm.236223	NM_207131	ENSMUSG00000052435	Cebpe	C/EBPe|C/EBPepsilon|CRP1|Gm294	CCAAT/enhancer binding protein (C/EBP), epsilon	protein-coding	3.38965790248795	3.56538814141236	3.0942864551576	3.73992918326254	2.7724864773967	3.42161055334764	2.60959706968752	3.1201342664648	-0.754202902810686	0.204186244746252	0.69167790036705
Merged-chr9-72530437-4	chr9	72530324	72530524	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045735, intron 1 of 2)	intron (NR_045735, intron 1 of 2)	1434.0	NR_045735	75115.0	Mm.280755	NR_045735	ENSMUSG00000096986	4930509E16Rik	-	RIKEN cDNA 4930509E16 gene	ncRNA	4.86739222756929	5.28200189044223	5.51861305791316	5.28045551177029	4.65723458092959	3.88891151707149	5.63070099760059	5.30357025185781	-0.270369162291128	0.472644398722829	0.926125823511231
Merged-chr17-33892069-2	chr17	33891999	33892199	+	654.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-1466.0	NM_001195298	100502766.0	Mm.335713	NM_001195298	ENSMUSG00000079553	Kifc1	100042970|Gm4137|HSET|KNSL2|Kifc5a|Knsl2a|Tctex-7|Tctex-7A|Tctex7|Tctex7a	kinesin family member C1	protein-coding	0.947475717198895	1.26243326754788	2.2294208993637	1.66702256185401	2.12942292413288	1.79862623786583	0.996787777215649	1.54059921948268	0.162892617826293	0.895124184961506	0.998431161219273
Merged-chr17-48042141-2	chr17	48042041	48042241	+	598.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-3848.0	NM_029689	76651.0	Mm.76918	NM_029689	ENSMUSG00000094928	1700122O11Rik	-	RIKEN cDNA 1700122O11 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-14864750-4	chr4	14864654	14864854	+	972.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028264, intron 1 of 6)	intron (NM_028264, intron 1 of 6)	535.0	NM_028264	72519.0	Mm.279158	NM_028264	ENSMUSG00000028221	Tmem55a	2610319K07Rik|AI315591|AV001360|Pip4p2	transmembrane protein 55A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-73473772-4	chr16	73473670	73473870	+	965.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	810621.0	NM_019413	19876.0	Mm.310772	NM_019413	ENSMUSG00000022883	Robo1	AW494633|AW742721|DUTT1|Gm310	roundabout guidance receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53218901-3	chr4	53218809	53219009	+	953.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27287.0	NR_040665	78180.0	Mm.243847	NR_040665	ENSMUSG00000086947	4930522O17Rik	-	RIKEN cDNA 4930522O17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89238016-2	chr3	89237916	89238116	+	723.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039466, intron 7 of 8)	intron (NM_001039466, intron 7 of 8)	6997.0	NR_121683	360213.0	Mm.331156	NM_183037	ENSMUSG00000042766	Trim46	TRIFIC	tripartite motif-containing 46	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-96532120-4	chr5	96532001	96532201	+	597.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175473, intron 3 of 73)	L2a|LINE|L2	158146.0	NM_175473	231470.0	Mm.291120	NM_175473	ENSMUSG00000034687	Fras1	E130113P14Rik|bl|mKIAA1500	Fraser extracellular matrix complex subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-98780289-4	chr10	98780191	98780391	+	757.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-134351.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-108414847-2	chr5	108414747	108414947	+	675.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008806, intron 3 of 21)	intron (NM_008806, intron 3 of 21)	19552.0	NR_154996	11958.0	Mm.136093	NM_007507	ENSMUSG00000050856	Atp5k	2610008D24Rik|Atp5i|Lfm1	ATP synthase, H+ transporting, mitochondrial F1F0 complex, subunit E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-144221622-2	chr5	144221522	144221722	+	953.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027410, intron 1 of 24)	intron (NM_027410, intron 1 of 24)	1993.0	NM_001356992	70381.0	Mm.239412	NM_027410	ENSMUSG00000066621	Tecpr1	2210010N04Rik|mKIAA1358	tectonin beta-propeller repeat containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-31322984-2	chr15	31322884	31323084	+	622.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_026153)	TTS (NM_026153)	44775.0	NM_001357923	67434.0	Mm.102470	NM_026153	ENSMUSG00000022237	Ankrd33b	0610012A05Rik|3021401C12Rik|5730557B15Rik	ankyrin repeat domain 33B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56758271-4	chr17	56758143	56758343	+	704.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008738)	promoter-TSS (NM_008738)	-695.0	NM_008738	18188.0	Mm.8074	NM_008738	ENSMUSG00000039481	Nrtn	NTN	neurturin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-30911605-4	chr12	30911455	30911655	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013709)	promoter-TSS (NM_013709)	57.0	NM_021330	11431.0	Mm.359831	NM_021330	ENSMUSG00000044573	Acp1	4632432E04Rik|AI427468|Acp-1|LMW-PTP|Lmptp	acid phosphatase 1, soluble	protein-coding	5.78054864708973	5.43189136215685	5.010560784868	5.54424577515455	5.95214835501464	5.71563643880896	5.46715547517837	6.26064486808041	0.45948161023221	0.102683838580259	0.498651117897712
Merged-chr4-62525400-4	chr4	62525251	62525451	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177607)	promoter-TSS (NM_177607)	-18.0	NM_001356420	214106.0	Mm.73212	NM_177607	ENSMUSG00000058046	4933430I17Rik	bN189G18.7	RIKEN cDNA 4933430I17 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-18500161-2	chr16	18500061	18500261	+	616.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081682, intron 2 of 7)	intron (NM_001081682, intron 2 of 7)	1290.0	NR_104347	13972.0	Mm.236139	NM_023120	ENSMUSG00000000884	Gnb1l	ESTM55|Gm16314|Me49f07|Wdr14|Wdvcf	guanine nucleotide binding protein (G protein), beta polypeptide 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47226051-3	chr17	47225936	47226136	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001097623, intron 3 of 19)	intron (NM_001097623, intron 3 of 19)	-4194.0	NM_172622	224829.0	Mm.260989	NM_172622		Trerf1	9430096I18Rik|AI429294|B830015H24|RAPA|Trep-132|Trep132	transcriptional regulating factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-65662833-4	chr17	65662748	65662948	+	992.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133685, intron 6 of 6)	intron (NM_133685, intron 6 of 6)	-20644.0	NM_001146002	213272.0	Mm.255732	NM_153519	ENSMUSG00000050612	Txndc2	AU021712|Sptrx-1|Sptrx1|Trx4	thioredoxin domain containing 2 (spermatozoa)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5796212-6	chr19	5796113	5796313	+	925.2777710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_144621)	promoter-TSS (NR_144621)	-232.0	NR_144621	109146451.0		NR_144621		Mascrna	-	Malat1-associated small cytoplasmic RNA	scRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-76024842-4	chr13	76024719	76024919	+	984.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6107.0	NM_001131069	218341.0	Mm.266515	NM_178916	ENSMUSG00000043190	Rfesd	AI256775|D030068K09	Rieske (Fe-S) domain containing	protein-coding	5.31056413662155	4.19815635643233	5.21337993575454	4.32540659260147	4.79217640297148	5.46620308840147	4.96014697899683	5.49720621026279	0.411228517386483	0.265317680623303	0.767868802425779
Merged-chr11-60938501-2	chr11	60938401	60938601	+	860.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008928, intron 1 of 11)	intron (NM_008928, intron 1 of 11)	6444.0	NM_008928	26397.0	Mm.18494	NM_008928	ENSMUSG00000018932	Map2k3	AW212142|MEK3|MKK3|Prkmk3|mMKK3b	mitogen-activated protein kinase kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-61911762-3	chr18	61911684	61911884	+	886.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360868)	promoter-TSS (NM_001360868)	40.0	NM_198649	319713.0	Mm.329478	NM_198649	ENSMUSG00000032735	Ablim3	AW990719|D930036B08Rik	actin binding LIM protein family, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44839889-2	chr7	44839789	44839989	+	623.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001042655)	TTS (NM_001042655)	3601.0	NM_010215	14204.0	Mm.2565	NM_010215	ENSMUSG00000074141	Il4i1	Fig1|Fig1-ps|LAAO|LAO	interleukin 4 induced 1	protein-coding	-1.7024385483431	-1.81249224917775	-1.82134771053534	-1.82862185015837	-1.70038292649591	-1.81057323376012	-1.81934302819017	-1.82731978264371	0.0376840119903864	0.991491645451152	1
Merged-chr15-98855297-2	chr15	98855197	98855397	+	904.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033276, intron 25 of 54)	intron (NM_001033276, intron 25 of 54)	15908.0	NM_001033276	381022.0	Mm.264889	NM_001033276	ENSMUSG00000048154	Kmt2d	ALR|BC032281|BC058659|C430014K11Rik|KMT2B|Mll2|Mll4	lysine (K)-specific methyltransferase 2D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117746409-4	chr10	117746319	117746519	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029875)	promoter-TSS (NM_029875)	-61.0	NM_029875	215436.0	Mm.256753	NM_029875	ENSMUSG00000060181	Slc35e3	9330166G04Rik|AI481200	solute carrier family 35, member E3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131062928-1	chr1	131062828	131063028	+	550.0	f1_balb.idr	intron (NM_008551, intron 1 of 9)	intron (NM_008551, intron 1 of 9)	34915.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	-0.0814139374639248	-0.19902431428949	-0.202867229256598	-0.205814795806341	0.138693903787299	0.262469629913077	-0.037396775192176	-0.0539578477805844	2.76786352053871	0.197932318230205	1
Merged-chr18-62088133-4	chr18	62088055	62088255	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	91826.0	NM_007420	11555.0	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-31474093-4	chr15	31473989	31474189	+	968.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172606, intron 20 of 25)	intron (NM_172606, intron 20 of 25)	-20400.0	NM_145852	252967.0	Mm.436668	NM_145852	ENSMUSG00000022236	Ropn1l	ASP|AV047578|Akapasp	ropporin 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-39851318-4	chr1	39851216	39851416	+	911.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3986.0	NR_040465	73426.0	Mm.396239	NR_040465	ENSMUSG00000101634	1700066B17Rik	-	RIKEN cDNA 1700066B17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-17647635-6	chr6	17647622	17647822	+	778.236084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007604, intron 1 of 9)	L1MD1|LINE|L1	10712.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	-1.32440223303897	-1.29339468673833	-0.717877708899544	-1.31276353204239	-1.32392690786997	-1.29109028300231	-1.30162128075409	-1.31119997543009	-2.49510383040271	0.470258445164311	1
Merged-chr10-50593942-2	chr10	50593842	50594042	+	546.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198007, intron 1 of 41)	intron (NM_198007, intron 1 of 41)	1273.0	NM_198007	77987.0	Mm.222497	NM_198007	ENSMUSG00000038774	Ascc3	ASC1p200|B630009I04Rik|BC023451|D430001L07Rik|D630041L21|Helic1|RNAH	activating signal cointegrator 1 complex subunit 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-56070236-4	chr4	56070144	56070344	+	858.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR78|LTR|ERV1	-537769.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-32952789-7	chr12	32952765	32952965	+	869.142883	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_044986, intron 2 of 5)	intron (NR_044986, intron 2 of 5)	924.0	NR_044986	74076.0	Mm.50114	NR_044986	ENSMUSG00000097494	4933406C10Rik	-	RIKEN cDNA 4933406C10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-36770338-3	chr16	36770231	36770431	+	892.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021301, intron 7 of 21)	IAPLTR1_Mm|LTR|ERVK	14631.0	NM_001145899	57738.0	Mm.281804	NM_021301	ENSMUSG00000022899	Slc15a2	8430408C16Rik|C78862|Pept2	solute carrier family 15 (H+/peptide transporter), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-12498643-3	chr4	12498550	12498750	+	803.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-326635.0	NM_026558	68099.0	Mm.25340	NM_026558	ENSMUSG00000028218	Fam92a	6720467C03Rik|Fam92a1	family with sequence similarity 92, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127055600-3	chr10	127055514	127055714	+	779.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001033262)	TTS (NM_001033262)	4570.0	NM_001033262	216438.0	Mm.37892	NM_001033262	ENSMUSG00000040502	March9	AI608492|BC019560	membrane-associated ring finger (C3HC4) 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-138447632-4	chr4	138447540	138447740	+	897.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7508.0	NM_025451	66259.0	Mm.41603	NM_025451	ENSMUSG00000046447	Camk2n1	1810006K23Rik|AI848599|AI891706	calcium/calmodulin-dependent protein kinase II inhibitor 1	protein-coding	3.82016448648829	4.25046670748472	2.93844900150116	2.56266201463046	3.63506152011149	3.52175876296061	2.82429113100947	4.12785925720928	0.070620832548072	0.908803404093562	0.998431161219273
Merged-chr17-24162152-3	chr17	24162053	24162253	+	904.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172935, intron 3 of 10)	intron (NM_172935, intron 3 of 10)	1580.0	NM_172935	245847.0	Mm.87319	NM_172935	ENSMUSG00000036820	Amdhd2	5730457F11Rik	amidohydrolase domain containing 2	protein-coding	1.29183575552416	0.807385907179481	0.989699472268421	1.25201436536359	1.07525964444856	1.0237615450386	1.42457917658591	1.66047021619463	0.94417355854581	0.473208825072486	0.926125823511231
Merged-chr7-45403740-4	chr7	45403656	45403856	+	843.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-2204.0	NM_010596	16495.0	Mm.12955	NM_010596	ENSMUSG00000038201	Kcna7	Kv1.7	potassium voltage-gated channel, shaker-related subfamily, member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-6654873-1	chr17	6654773	6654973	+	624.0	f1_c57bl6.idr	intron (NM_001166630, intron 1 of 4).2	intron (NM_001166630, intron 1 of 4).2	958.0	NM_001166630	100040563.0	Mm.457381	NM_001166630	ENSMUSG00000000579	Dynlt1c	100040603|Dynlt1d	dynein light chain Tctex-type 1C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-21067218-2	chr19	21067118	21067318	+	936.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37492.0	NR_126458	75354.0	Mm.243873	NR_126458		4930554I06Rik	-	RIKEN cDNA 4930554I06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69072881-5	chr11	69072609	69072809	+	953.93335	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028566)	promoter-TSS (NR_028566)	-717.0	NR_028566	100216530.0	Mm.453052	NR_028566	ENSMUSG00000064899	Snord118	MBI-34	small nucleolar RNA, C/D box 118	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-134258634-4	chr5	134258507	134258707	+	901.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359066, intron 15 of 32)	intron (NM_001359066, intron 15 of 32)	-28982.0	NR_104383	17969.0	Mm.425296	NM_010876	ENSMUSG00000015950	Ncf1	NCF-47K|NOXO2|Ncf-1|p47-phox|p47<phox>|p47phox	neutrophil cytosolic factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-25494174-2	chr14	25494074	25494274	+	554.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	34989.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-83235580-1	chr8	83235480	83235680	+	771.0	f0_balb.idr	intron (NM_001111304, intron 5 of 20)	intron (NM_001111304, intron 5 of 20)	-54768.0	NM_009463	22227.0	Mm.4177	NM_009463	ENSMUSG00000031710	Ucp1	AI385626|Slc25a7|Ucp	uncoupling protein 1 (mitochondrial, proton carrier)	protein-coding	1.5471783888605	2.52103448834696	2.11650013795871	1.19793854583473	1.84565589240056	2.6316938381865	1.85343313033866	2.06606347286775	0.470866603167849	0.641006193426077	0.982599433509505
Merged-chr17-11108111-2	chr17	11108011	11108211	+	759.583313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001317726, intron 2 of 6)	intron (NM_001317726, intron 2 of 6)	267752.0	NM_016694	50873.0	Mm.311110	NM_016694	ENSMUSG00000023826	Park2	PRKN	Parkinson disease (autosomal recessive, juvenile) 2, parkin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-3247495-4	chr5	3247377	3247577	+	893.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-96416.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-26973498-2	chr2	26973398	26973598	+	986.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290463)	promoter-TSS (NM_001290463)	82.0	NM_001290465	279028.0	Mm.330084	NM_001001322	ENSMUSG00000014852	Adamts13	ADAM-TS13|ADAMTS-13|Gm710|vWF-CP	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101241876-2	chr15	101241776	101241976	+	719.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16690.0	NR_045328	380977.0	Mm.399924	NR_045326	ENSMUSG00000097915	A330009N23Rik	-	RIKEN cDNA A330009N23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-24275105-4	chr16	24274993	24275193	+	794.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-118257.0	NM_178665	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-55505061-2	chr12	55504961	55505161	+	653.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur3|SINE|Alu	-12414.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-120950386-2	chr4	120950286	120950486	+	915.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001005788, intron 1 of 5)	MIRb|SINE|MIR	1315.0	NM_001005788	381549.0	Mm.331840	NM_001005788	ENSMUSG00000064141	Zfp69	Gm1029|Krab2|Zfp63	zinc finger protein 69	protein-coding	0.0186499671356513	-0.246670056098721	-0.251768889651724	-0.255713769491849	0.0254680279160469	0.617428834041538	-0.250642942258798	-0.255023902500052	2.28121165441073	0.341103075870502	1
Merged-chr9-46273107-4	chr9	46273017	46273217	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011752)	promoter-TSS (NM_011752)	53.0	NM_011752	22687.0	Mm.17519	NM_011752	ENSMUSG00000032078	Zpr1	AI303781|Zfp259|Znf259	ZPR1 zinc finger	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-26409219-4	chr2	26409112	26409312	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290437)	promoter-TSS (NM_001290437)	7.0	NM_033134	64436.0	Mm.330070	NM_033134	ENSMUSG00000026925	Inpp5e	1200002L24Rik|72kDa|mKIAA0123	inositol polyphosphate-5-phosphatase E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-37348334-4	chr13	37348228	37348428	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010745, intron 1 of 4)	intron (NM_010745, intron 1 of 4)	2983.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-65752269-2	chr18	65752169	65752369	+	819.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_177028)	TTS (NM_177028)	-48309.0	NM_025468	66286.0	Mm.27800	NM_025468	ENSMUSG00000024516	Sec11c	1810029G24Rik|Sec11l3	SEC11 homolog C, signal peptidase complex subunit	protein-coding	0.5874611401072	1.47798679089558	0.436761264146403	1.15968082861472	1.1781364630657	0.44995270295123	0.43915433750789	0.429804140537123	-1.42885891041792	0.415944116117758	0.896676881011847
Merged-chr5-31488094-4	chr5	31487990	31488190	+	946.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026296, exon 2 of 2)	exon (NM_026296, exon 2 of 2)	2231.0	NM_026296	67656.0	Mm.23355	NM_026296	ENSMUSG00000029138	4930548H24Rik	AI427865	RIKEN cDNA 4930548H24 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-45968350-4	chr13	45968271	45968471	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3380.0	NM_009124	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139298880-2	chr5	139298780	139298980	+	914.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172723, intron 3 of 10)	intron (NM_172723, intron 3 of 10)	26584.0	NM_172723	231821.0	Mm.297819	NM_172723	ENSMUSG00000056413	Adap1	4930431P11Rik|Centa1|GC1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-121801370-4	chr11	121801283	121801483	+	957.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1C|Other|Other	-28835.0	NM_029049	74675.0	Mm.61213	NM_029049	ENSMUSG00000039198	Ptchd3	4930451E13Rik|4933440L20Rik|RNDEu-3	patched domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-30974734-4	chr16	30974637	30974837	+	969.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198626, intron 3 of 3)	L1MA9|LINE|L1	106695.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-11191306-4	chr4	11191222	11191422	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009830)	promoter-TSS (NM_009830)	-29.0	NM_001037134	12448.0	Mm.35867	NM_009830	ENSMUSG00000028212	Ccne2	-	cyclin E2	protein-coding	5.01687777517832	5.17521083628328	5.22561550385797	4.25231682132326	5.49631811621922	4.13343007093283	4.46542966419524	5.12157888721022	-0.0512185433389373	0.896279776322175	0.998431161219273
Merged-chr13-75823393-4	chr13	75823289	75823489	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16496.0	NM_001360151	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	3.78714185212894	4.60732229426155	4.56230018336524	4.34467535479881	3.75195802643494	4.47181291436324	5.31290588272373	4.68276042256041	0.390769477672704	0.37252857245899	0.865109408625856
Merged-chr6-108719027-4	chr6	108718935	108719135	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58101.0	NR_104577	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-83397567-2	chr10	83397467	83397667	+	660.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17A-int|LTR|ERVK	37346.0	NM_026579	28109.0	Mm.196210	NM_026579	ENSMUSG00000020255	D10Wsu102e	AI747614|C430041I18Rik	DNA segment, Chr 10, Wayne State University 102, expressed	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153250036-2	chr2	153249936	153250136	+	883.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_080463, intron 4 of 6)	intron (NM_080463, intron 4 of 6)	8504.0	NM_080463	140484.0	Mm.293761	NM_080463	ENSMUSG00000046020	Pofut1	O-FucT-1|mKIAA0180	protein O-fucosyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-6705056-3	chr2	6704933	6705133	+	899.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110232, intron 4 of 15)	intron (NM_001110232, intron 4 of 15)	16629.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16924147-4	chr7	16924058	16924258	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007590)	promoter-TSS (NM_007590)	-126.0	NM_007590	12315.0	Mm.288630	NM_007590	ENSMUSG00000019370	Calm3	CaMA|Cam3|Camc|R75142	calmodulin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19754282-2	chr7	19754182	19754382	+	770.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4709.0	NM_001159724	19294.0	Mm.4341	NM_008990	ENSMUSG00000062300	Nectin2	AI325026|AI987993|Cd112|MPH|Pvr|Pvrl2|Pvs|nectin-2	nectin cell adhesion molecule 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-56112873-2	chr9	56112773	56112973	+	583.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_011193, intron 1 of 14)	intron (NM_011193, intron 1 of 14)	22897.0	NM_011193	19200.0	Mm.2534	NM_011193	ENSMUSG00000032322	Pstpip1	CD2BP1|def-2	proline-serine-threonine phosphatase-interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-55652028-4	chr4	55651921	55652121	+	873.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-119546.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-50056261-4	chr18	50056123	50056323	+	882.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134131, intron 1 of 1)	intron (NM_134131, intron 1 of 1)	-2561.0	NR_155293	102635912.0	Mm.440627	NR_155293		C030005K06Rik	-	RIKEN cDNA C030005K06 gene	ncRNA	3.32291589566421	2.75211687036886	2.77276065123846	2.46404285956972	3.29707840180617	2.32989583612397	2.68077649608438	2.18560370290262	-0.301893757849175	0.682657621699984	0.995882295196263
Merged-chr9-64032031-2	chr9	64031931	64032131	+	860.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6A|LTR|ERVK	9434.0	NR_040726	73397.0	Mm.48745	NR_040726	ENSMUSG00000093616	1700055C04Rik	-	RIKEN cDNA 1700055C04 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-125471578-4	chr1	125471571	125471771	+	948.699402	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	-35944.0	NM_001205385	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-97558577-2	chr13	97558477	97558677	+	582.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-1423.0	NR_046157	328314.0	Mm.138047	NR_046157	ENSMUSG00000110235	Gm5086	B230311A21|EG328314	predicted gene 5086	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-79368414-3	chr11	79368308	79368508	+	743.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010897, intron 1 of 57)	MLT-int|LTR|ERVL-MaLR	28516.0	NM_010897	18015.0	Mm.255596	NM_010897	ENSMUSG00000020716	Nf1	AW494271|Dsk9|E030030H24Rik|Mhdadsk9|Nf-1	neurofibromin 1	protein-coding	-0.111869201461311	-0.0889436052386756	-0.0963514071868722	0.897240893368383	-0.110409905026223	0.752536583960664	-0.094709260105586	-0.101119344575826	-0.347709990678403	0.882631899401822	1
Merged-chr12-103435481-2	chr12	103435381	103435581	+	609.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_026790, exon 2 of 7)	exon (NM_026790, exon 2 of 7)	1292.0	NM_194069	52668.0	Mm.2121	NM_026790	ENSMUSG00000064215	Ifi27	1110013J02Rik|2900026P10Rik|D12Ertd647e|ISG12a|Ifi27l1	interferon, alpha-inducible protein 27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83683094-3	chr6	83682954	83683154	+	923.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5197.0	NM_144943	246278.0	Mm.136079	NM_144943	ENSMUSG00000034783	Cd207	-	CD207 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-134907330-3	chr5	134907240	134907440	+	845.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029681)	promoter-TSS (NM_029681)	-607.0	NM_194065	76629.0	Mm.159750	NM_029681	ENSMUSG00000040576	Tmem270	1700111I05Rik|Wbscr28	transmembrane protein 270	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-61143883-2	chr10	61143783	61143983	+	617.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009163, intron 2 of 14)	intron (NM_009163, intron 2 of 14)	3801.0	NM_009163	20397.0	Mm.412319	NM_009163	ENSMUSG00000020097	Sgpl1	AI428538|D10Xrf456|S1PL|Spl	sphingosine phosphate lyase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-119173008-3	chr2	119172902	119173102	+	889.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_177157)	TTS (NM_177157)	-1507.0	NM_001039223	623781.0	Mm.389344	NM_001039223	ENSMUSG00000055926	Gm14137	-	predicted gene 14137	protein-coding	1.53951183667546	1.05520611716017	1.83839587762225	1.00388629653649	2.28548758373647	2.41243201780886	1.03314485558457	2.69189133538839	2.24169678243577	0.0580057274769651	0.356207967075077
Merged-chr5-139438909-2	chr5	139438809	139439009	+	605.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028469, intron 2 of 4)	B1_Mur3|SINE|Alu	15730.0	NM_029771	76854.0	Mm.389706	NM_029771	ENSMUSG00000053647	Gper1	6330420K13Rik|CMKRL2|Ceprl|FEG-1|GPCR-Br|Gper|Gpr30	G protein-coupled estrogen receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-37538604-4	chr17	37538489	37538689	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8632.0	NM_001005485	545205.0	Mm.383371	NM_001005485	ENSMUSG00000090675	Olfr111	-	olfactory receptor 111	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120949467-2	chr11	120949367	120949567	+	773.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038654, intron 1 of 4)	CpG	400.0	NM_001038654	80879.0	Mm.28632	NM_030696	ENSMUSG00000025161	Slc16a3	Mct3|Mct4	solute carrier family 16 (monocarboxylic acid transporters), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-143584105-3	chr7	143583994	143584194	+	775.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252593, intron 6 of 21)	intron (NM_001252593, intron 6 of 21)	-13335.0	NR_106031	102465644.0		NR_106031	ENSMUSG00000098593	Mir7064	Gm27632|mmu-mir-7064	microRNA 7064	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-20832344-2	chr14	20832365	20832565	+	938.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4197.0	NM_008873	18792.0	Mm.4183	NM_008873	ENSMUSG00000021822	Plau	u-PA|uPA	plasminogen activator, urokinase	protein-coding	0.357162106462544	-0.000240121261310483	-0.00561630662757451	-0.00976469672921615	0.633654883475025	0.000971704701136389	0.571289887774204	-0.00903993522509033	1.88759589368219	0.405890490337104	1
Merged-chr6-100211399-4	chr6	100211280	100211480	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	75978.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-35061113-2	chr2	35061013	35061213	+	928.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_010406, intron 1 of 40)	intron (NM_010406, intron 1 of 40)	328.0	NM_010406	15139.0	Mm.2168	NM_010406	ENSMUSG00000026874	Hc	C5|C5a|He|Hfib2	hemolytic complement	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-11200495-2	chr2	11200395	11200595	+	659.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008859, intron 1 of 17)	B4A|SINE|B4	28113.0	NM_008859	18761.0	Mm.329993	NM_008859	ENSMUSG00000026778	Prkcq	A130035A12Rik|AW494342|PKC-0|PKC-theta|PKCtheta|Pkcq	protein kinase C, theta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-72261530-2	chr2	72261430	72261630	+	602.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24107.0	NM_023057	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-16045575-3	chr5	16045476	16045676	+	855.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110843, intron 3 of 38)	intron (NM_001110843, intron 3 of 38)	110885.0	NM_001110844	12293.0	Mm.159842	NM_009784	ENSMUSG00000040118	Cacna2d1	Ca(v)alpha2delta1|Cacna2|Cchl2a	calcium channel, voltage-dependent, alpha2/delta subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-73898897-3	chr12	73898805	73899005	+	965.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2419.0	NM_001313920	15251.0	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84981104-4	chr8	84980984	84981184	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2336.0	NM_008416	16477.0	Mm.1167	NM_008416	ENSMUSG00000052837	Junb	-	jun B proto-oncogene	protein-coding	5.28789560834991	4.43386447523995	5.23753524819978	5.45015248597004	5.50128238374524	5.49242306507078	5.30523285630421	4.24755865403549	0.0708901006531627	0.843577436122766	0.998431161219273
Merged-chr5-44284569-3	chr5	44284448	44284648	+	680.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57942.0	NM_173764	231225.0	Mm.30688	NM_173764	ENSMUSG00000046985	Tapt1	4932414K18Rik	transmembrane anterior posterior transformation 1	protein-coding	-1.05250607526984	-0.402739045299741	-1.04366794023272	-1.04875758567453	-0.897607459308638	-1.02893395323655	-1.040926557591	-1.04836336437307	-1.93683734114878	0.536907385174869	1
Merged-chr11-116109670-4	chr11	116109580	116109780	+	963.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172570, exon 1 of 6)	exon (NM_172570, exon 1 of 6)	555.0	NM_001205081	217333.0	Mm.347770	NM_172570	ENSMUSG00000020773	Trim47	2210023F24Rik	tripartite motif-containing 47	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45888404-2	chr7	45888304	45888504	+	792.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021482, intron 3 of 4)	intron (NM_021482, intron 3 of 4)	8307.0	NM_001291064	58867.0	Mm.214217	NM_021482	ENSMUSG00000040231	Syngr4	1700016O14Rik	synaptogyrin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101780784-2	chr11	101780684	101780884	+	635.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008815, intron 4 of 12)	intron (NM_008815, intron 4 of 12)	4526.0	NM_008815	18612.0	Mm.5025	NM_008815	ENSMUSG00000017724	Etv4	AW414408|Pea-3|Pea3	ets variant 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-44805425-2	chr13	44805325	44805525	+	978.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205043, intron 1 of 17)	intron (NM_001205043, intron 1 of 17)	74154.0	NM_001205043	16468.0	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-110556351-3	chr7	110556259	110556459	+	731.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177324, intron 2 of 40)	intron (NM_177324, intron 2 of 40)	58561.0	NM_177324	319934.0	Mm.102970	NM_177324	ENSMUSG00000038371	Sbf2	4833411B01Rik|AA414977|AI317167|B430219L04Rik|Mtmr13|mMTMH1	SET binding factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-38357141-1	chr6	38357041	38357241	+	686.0	f1_balb.idr	Intergenic	Intergenic	-2538.0	NM_028864	78781.0	Mm.25243	NM_028421	ENSMUSG00000029826	Zc3hav1	1200014N16Rik|2900058M19Rik|9130009D18Rik|9830115L13Rik|ARTD13|D6Bwg1452e|ZAP	zinc finger CCCH type, antiviral 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-145289489-3	chr7	145289350	145289550	+	808.711121	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5439.0	NR_132642	233979.0	Mm.102235	NM_146206	ENSMUSG00000048677	Tpcn2	D830047E22Rik|Gm35086	two pore segment channel 2	protein-coding	-0.124404015387385	-0.242185183256522	-0.245902881282567	-0.248754141116756	-0.00598219321402935	-0.0614082737020779	-0.0806665363435561	0.246718089312776	2.71299719988873	0.212768807041291	1
Merged-chr5-43228282-2	chr5	43228182	43228382	+	551.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_028417, intron 1 of 7)	intron (NR_028417, intron 1 of 7)	-5181.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	-1.8418762459921	-1.8125357239735	-1.82140854000656	-1.82869693527674	-1.56059678980999	-1.8106129477253	-1.81939992894326	-1.82739231600805	1.3620893379502	0.699511506488145	1
Merged-chr15-51961555-2	chr15	51961455	51961655	+	662.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30205.0	NM_009009	19357.0	Mm.182628	NM_009009	ENSMUSG00000022314	Rad21	SCC1|mKIAA0078	RAD21 cohesin complex component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-60265146-4	chr14	60265024	60265224	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144843)	promoter-TSS (NM_144843)	-81.0	NM_144843	219135.0	Mm.247007	NM_144843	ENSMUSG00000021987	Mtmr6	4022440C11Rik|AI428804|AU041072	myotubularin related protein 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24039300-2	chr17	24039200	24039400	+	751.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175440, intron 1 of 5)	intron (NM_175440, intron 1 of 5)	1057.0	NM_175440	213171.0	Mm.133083	NM_175440	ENSMUSG00000050762	Prss27	CAPH2|Mpn|marapsin	protease, serine 27	protein-coding	-2.18361151404719	-2.02201993626881	-2.16403530460334	-2.1710062446989	-2.18164157430194	-2.15370992785044	-2.16211418110791	-2.16975844975469	-0.683654500252594	0.846597994014493	1
Merged-chr15-81812510-2	chr15	81812410	81812610	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_017376, intron 1 of 3)	intron (NM_017376, intron 1 of 3)	1096.0	NM_017376	21685.0	Mm.270278	NM_017376	ENSMUSG00000022389	Tef	2310028D20Rik	thyrotroph embryonic factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-136602224-4	chr4	136602175	136602375	+	858.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001347221, exon 1 of 20)	exon (NM_001347221, exon 1 of 20)	448.0	NM_001356567	99982.0	Mm.28540	NM_133872	ENSMUSG00000036940	Kdm1a	1810043O07Rik|AA408884|Aof2|D4Ertd478e|Kdm1|Lsd1|mKIAA0601	lysine (K)-specific demethylase 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46145067-2	chr8	46144967	46145167	+	786.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-18584.0	NM_025747	66756.0	Mm.133623	NM_025747	ENSMUSG00000031631	Cfap97	1110068E21Rik|4933411K20Rik|AW049273|Kiaa1430	cilia and flagella associated protein 97	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-40927791-4	chr8	40927673	40927873	+	989.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026840, intron 1 of 5)	intron (NM_026840, intron 1 of 5)	1540.0	NM_026840	68797.0	Mm.284246	NM_026840	ENSMUSG00000031595	Pdgfrl	1110039P19Rik|AV013190	platelet-derived growth factor receptor-like	protein-coding	4.56407785415097	4.7139025826615	4.66101396720993	4.70671555924307	4.06913298067402	3.98499161731281	4.77978677137357	4.32182657705596	-0.427340723814708	0.262022145708343	0.763414692619887
Merged-chr3-116158629-2	chr3	116158529	116158729	+	586.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-28941.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	-1.06997269762433	-1.30473905204845	-1.3145270772132	-1.32256725251374	-1.06385251204029	-1.30261794616352	-1.3123112828633	-1.32112806497905	0.0394047164033882	0.991001358494878	1
Merged-chr6-24166952-3	chr6	24166858	24167058	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019481, intron 1 of 14)	MIR|SINE|MIR	1134.0	NM_019481	55961.0	Mm.19299	NM_019481	ENSMUSG00000029700	Slc13a1	AI314066|AI987826|NaSi-1|Nas1	solute carrier family 13 (sodium/sulfate symporters), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-54940644-2	chr6	54940544	54940744	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001171007, intron 4 of 11)	RMER10A|LTR|ERVL	31017.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-51615785-4	chr11	51615694	51615894	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3979.0	NM_026631	52530.0	Mm.28203	NM_026631	ENSMUSG00000001056	Nhp2	2410130M07Rik|D11Ertd175e|Nola2	NHP2 ribonucleoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-41073450-2	chr13	41073350	41073550	+	895.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145802, intron 1 of 11)	intron (NM_001145802, intron 1 of 11)	-2985.0	NM_008547	17152.0	Mm.8149	NM_008547	ENSMUSG00000021363	Mak	A930010O05Rik	male germ cell-associated kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-57744329-2	chr6	57744229	57744429	+	628.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	41874.0	NM_133737	71835.0	Mm.274904	NM_133737	ENSMUSG00000062190	Lancl2	1700003F10Rik	LanC (bacterial lantibiotic synthetase component C)-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35870843-4	chr17	35870734	35870934	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146710, intron 2 of 3)	intron (NM_001146710, intron 2 of 3)	4219.0	NM_175242	76448.0	Mm.359982	NM_175242	ENSMUSG00000034595	Ppp1r18	2310014H01Rik|AA407849|AI450394	protein phosphatase 1, regulatory subunit 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-60534995-2	chr11	60534895	60535095	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-2688.0	NM_172943	268420.0	Mm.262056	NM_172943	ENSMUSG00000042650	Alkbh5	AW050020|AW215868|Abh5|E130207K11|Ofoxd	alkB homolog 5, RNA demethylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-20982926-2	chr5	20982826	20983026	+	677.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur3|SINE|Alu	-31104.0	NM_001080977	242860.0	Mm.254286	NM_001080977	ENSMUSG00000039968	Rsbn1l	8430412F05Rik|AI447441|C330002G24Rik	round spermatid basic protein 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-27791624-4	chr5	27791508	27791708	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018878)	promoter-TSS (NM_018878)	-58.0	NM_018878	55982.0	Mm.277190	NM_018878	ENSMUSG00000002221	Paxip1	D5Ertd149e|PTIP	PAX interacting (with transcription-activation domain) protein 1	protein-coding	4.61403613942808	4.7710334546798	5.45673620783098	4.67991983602666	4.61154068994471	4.3393785827117	5.38436834928461	4.06653250102051	-0.277136751146124	0.488311459268121	0.933453007555711
Merged-chr12-4163541-2	chr12	4163441	4163641	+	737.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159537, intron 2 of 21)	intron (NM_001159537, intron 2 of 21)	29388.0	NM_138305	104111.0	Mm.489807	NM_138305	ENSMUSG00000020654	Adcy3	AC3|mKIAA0511	adenylate cyclase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78600842-2	chr15	78600742	78600942	+	644.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028195, intron 1 of 12)	intron (NM_028195, intron 1 of 12)	3795.0	NM_028195	72318.0	Mm.32911	NM_028195	ENSMUSG00000018008	Cyth4	2510004M07Rik|5830469K17Rik|AI467541|Pscd4|mFLJ00017	cytohesin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128801003-2	chr2	128800922	128801122	+	624.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 18 of 18)	intron (NM_008587, intron 18 of 18)	-17281.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-88515821-4	chr4	88515732	88515932	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6962.0	NM_010510	15977.0	Mm.1245	NM_010510	ENSMUSG00000048806	Ifnb1	IFN-beta|IFNB|Ifb	interferon beta 1, fibroblast	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-90841653-4	chr8	90841566	90841766	+	976.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177224, intron 1 of 39)	intron (NM_177224, intron 1 of 39)	12831.0	NM_177224	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	1.55584081829666	1.23411230289224	3.33583397307413	2.35145841947724	1.74021688585914	1.53496080236855	2.44601675124459	2.36461836961644	-0.694203129008637	0.494980684263694	0.935773371251117
Merged-chr13-40939760-2	chr13	40939660	40939860	+	586.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133219, intron 1 of 2)	intron (NM_133219, intron 1 of 2)	22126.0	NM_133219	14538.0	Mm.314757	NM_008105	ENSMUSG00000021360	Gcnt2	5330430K10Rik|IGnT|IGnTA|IGnTB|IGnTC	glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-78149291-4	chr10	78149194	78149394	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	UCON26|Unknown|Unknown	20474.0	NM_138601	28295.0	Mm.268691	NM_138601	ENSMUSG00000053329	D10Jhu81e	C21orf33|ES1	DNA segment, Chr 10, Johns Hopkins University 81 expressed	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-69199696-4	chr12	69199589	69199789	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033222, exon 2 of 2)	non-coding (NR_033222, exon 2 of 2)	-1260.0	NM_027269	109065.0	Mm.107180	NM_027269	ENSMUSG00000020973	Dnaaf2	Ktu|TU54|kintoun|mknt	dynein, axonemal assembly factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-17393790-2	chr4	17393690	17393890	+	763.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4A|LINE|L1	-459103.0	NR_135158	17389.0	Mm.187315	NM_019724	ENSMUSG00000028226	Mmp16	MT-MMP 3|MT3-MMP|Mt3mmp	matrix metallopeptidase 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-56731062-2	chr19	56730962	56731162	+	613.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8690.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-83746246-3	chr1	83746142	83746342	+	892.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-338042.0	NM_001356547	77629.0	Mm.154303	NM_172430	ENSMUSG00000026163	Sphkap	4930544G21Rik|A930009L15Rik|AI852220|SKIP|mKIAA1678	SPHK1 interactor, AKAP domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83384233-1	chr6	83384133	83384333	+	543.0	f1_balb.idr	intron (NM_001347313, intron 5 of 11)	intron (NM_001347313, intron 5 of 11)	16869.0	NR_105793	102465194.0		NR_105793	ENSMUSG00000099045	Mir6374	Gm27292|mmu-mir-6374	microRNA 6374	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-77617480-2	chr10	77617380	77617580	+	937.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_125904, exon 5 of 5)	non-coding (NR_125904, exon 5 of 5)	3771.0	NR_125903	20610.0	Mm.24433	NM_019929	ENSMUSG00000020265	Sumo3	2810014B19Rik|D10Ertd345e|SMT3A|SUMO-3|Smt3h1	small ubiquitin-like modifier 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-52000009-4	chr11	51999891	52000091	+	981.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009458, intron 1 of 5)	intron (NM_009458, intron 1 of 5)	475.0	NM_009458	22210.0	Mm.384918	NM_009458	ENSMUSG00000020390	Ube2b	E2-14k|HR6B|Rad6b|mHR6B	ubiquitin-conjugating enzyme E2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-34743605-2	chr8	34743505	34743705	+	673.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64005.0	NM_176933	319520.0	Mm.170276	NM_176933	ENSMUSG00000031530	Dusp4	2700078F24Rik|AI844617|BB104621|E130306H24Rik|MKP2	dual specificity phosphatase 4	protein-coding	2.15760213543674	0.92905975798053	0.90637513985747	2.29052754690275	2.1080098958604	0.93406222799972	0.911449925771402	1.75947497134523	-0.546793993564092	0.695738946662555	0.997923870727665
Merged-chr2-22933772-4	chr2	22933682	22933882	+	949.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019501, intron 9 of 10)	intron (NM_019501, intron 9 of 10)	38260.0	NM_001355467	56075.0	Mm.249752	NM_019501	ENSMUSG00000026784	Pdss1	2610203G20Rik|2700031G06Rik|TPT|TPT 1|Tprt|mDLP1|mSPS1	prenyl (solanesyl) diphosphate synthase, subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-83633019-3	chr17	83632920	83633120	+	923.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1125.0	NM_153512	225030.0	Mm.223506	NM_153512	ENSMUSG00000045053	Kcng3	KV6.3|Kv10.1a|Kv10.1b	potassium voltage-gated channel, subfamily G, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-34933357-2	chr18	34933257	34933457	+	962.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER21C|LTR|ERVL	-1354.0	NM_144866	225363.0	Mm.329353	NM_144866	ENSMUSG00000024360	Etf1	AI463371|D6Ertd109e|ERF|ERF1|SUP45L1|TB3-1	eukaryotic translation termination factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25683266-2	chr7	25683166	25683366	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172148, intron 1 of 2)	intron (NM_172148, intron 1 of 2)	2108.0	NM_172148	232987.0	Mm.22849	NM_172148	ENSMUSG00000063439	B9d2	stumpy	B9 protein domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165882056-4	chr2	165881959	165882159	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252587, intron 1 of 11)	intron (NM_001252587, intron 1 of 11)	219.0	NM_001281926	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-138279428-2	chr4	138279319	138279519	+	981.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_010623, intron 5 of 14)	intron (NM_010623, intron 5 of 14)	17168.0	NM_010623	16559.0	Mm.271936	NM_010623	ENSMUSG00000028758	Kif17	5930435E01Rik|AW492270|Kif17b|mKIAA1405	kinesin family member 17	protein-coding	1.17192016823098	1.27645611671031	2.59867957934614	2.23263384674162	1.89655518512515	2.61940595524985	2.06186473157869	2.6946554689036	0.886365288678085	0.390148876385144	0.879265642809537
Merged-chr4-71307662-4	chr4	71307560	71307760	+	735.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-772732.0	NM_172694	230316.0	Mm.251188	NM_172694	ENSMUSG00000039270	Megf9	4933405H16Rik|9630025C07|Egfl5|mKIAA0818	multiple EGF-like-domains 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84912559-2	chr8	84912457	84912657	+	998.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_103491)	promoter-TSS (NR_103491)	-778.0	NR_103491	100503676.0	Mm.437155	NR_103491	ENSMUSG00000003812	Gm38426	-	predicted gene, 38426	ncRNA	-0.413270832553205	0.248879758316469	-0.403519686790488	-0.4071766335812	-0.41236239857827	0.260274020124072	-0.402476173372258	-0.406537021983025	0.0394809277679939	0.98817139586833	1
Merged-chr5-129017207-1	chr5	129017107	129017307	+	560.0	f1_balb.idr	Intergenic	B3|SINE|B2	-2949.0	NM_009391	19384.0	Mm.297440	NM_009391	ENSMUSG00000029430	Ran	-	RAN, member RAS oncogene family	protein-coding	-2.18233058068552	-2.15536956715525	-2.16352280018114	-2.04193253143548	-2.18043796738662	-2.15360272754651	-2.16167708693786	-2.16902129354933	-0.683654500252594	0.846597994014493	1
Merged-chr6-142058871-2	chr6	142058771	142058971	+	562.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3_Mus|LINE|L1	-50126.0	NM_001081318	625716.0	Mm.295865	NM_001081318	ENSMUSG00000079263	Gm6614	EG625716	predicted gene 6614	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-88146268-1	chr15	88146168	88146368	+	819.25	f0_balb.idr	Intergenic	Intergenic	-168606.0	NR_045281	328579.0	Mm.146839	NR_045281	ENSMUSG00000116331	B230214G05Rik	B230214G05	RIKEN cDNA B230214G05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-75838445-2	chr14	75838345	75838545	+	684.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	6519.0	NR_045294	100043189.0	Mm.426329	NR_045294		Gm4285	-	predicted gene 4285	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-35509011-2	chr2	35508911	35509111	+	918.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-47562.0	NM_001145821	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27857756-4	chr17	27857646	27857846	+	758.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080769, intron 1 of 20)	intron (NM_001080769, intron 1 of 20)	1239.0	NM_001080769	224648.0	Mm.291291	NM_001080769	ENSMUSG00000039512	Uhrf1bp1	1110020K19Rik|AA408674|F830021D11Rik|mKIAA4127	UHRF1 (ICBP90) binding protein 1	protein-coding	1.46249156038944	1.51546128389775	1.90267843880485	0.920102376273859	1.57751697698181	1.5271032565185	1.47464196908711	0.922235810735794	-0.353453033651734	0.781023404363749	0.998431161219273
Merged-chr9-70692519-2	chr9	70692419	70692619	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007399, intron 1 of 15)	intron (NM_007399, intron 1 of 15)	13537.0	NM_007399	11487.0	Mm.3037	NM_007399	ENSMUSG00000054693	Adam10	1700031C13Rik|MADM|kuz|kuzbanian	a disintegrin and metallopeptidase domain 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171617092-4	chr1	171616988	171617188	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9678.0	NM_001277968	17085.0	Mm.560	NM_008534	ENSMUSG00000004707	Ly9	AI893573|CD229|Lgp100|Ly-9|SLAMF3|T100	lymphocyte antigen 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-56530415-2	chr19	56530327	56530527	+	977.916626	f0_balb.idr|f1_balb.idr	intron (NR_153440, intron 9 of 9)	intron (NR_153440, intron 9 of 9)	17695.0	NM_001360437	55947.0	Mm.2805	NM_018831	ENSMUSG00000025077	Dclre1a	2810043H12Rik|AU022226|Pso2|Smn1a|Snm1|mKIAA0086	DNA cross-link repair 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-118609295-4	chr10	118609177	118609377	+	830.729187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52752.0	NR_104123	103214.0	Mm.30529	NR_104123	ENSMUSG00000112230	Ifngas1	AI447422|Tmevpg1	Ifng antisense RNA 1	ncRNA	2.44441725169714	2.7364955826063	2.28427358417123	2.22214449828862	3.20326982464641	2.21829946792142	2.43679802532882	2.36372662057045	0.420650284677924	0.591720022114138	0.969959489752085
Merged-chr11-48774940-2	chr11	48774840	48775040	+	841.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25420.0	NM_008143	14694.0	Mm.5305	NM_008143	ENSMUSG00000020372	Rack1	AL033335|GB-like|Gnb2-rs1|Gnb2l1|p205	receptor for activated C kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-13287648-2	chr16	13287548	13287748	+	763.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001122667, intron 2 of 16)	Lx5c|LINE|L1	22569.0	NM_181860	239719.0	Mm.270643	NM_153588	ENSMUSG00000009569	Mkl2	Gt4-1|MRTF-B|Mrtfb|mKIAA1243	MKL/myocardin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-59482856-4	chr1	59482760	59482960	+	901.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_008057, exon 1 of 1)	5' UTR (NM_008057, exon 1 of 1)	713.0	NM_008057	14369.0	Mm.297906	NM_008057	ENSMUSG00000041075	Fzd7	Fz7	frizzled class receptor 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28259262-3	chr17	28259147	28259347	+	804.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011145, intron 2 of 7)	MTD|LTR|ERVL-MaLR	-12461.0	NR_045427	69050.0	Mm.486938	NR_045427	ENSMUSG00000002250	1810013A23Rik	-	RIKEN cDNA 1810013A23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-30693815-3	chr14	30693726	30693926	+	641.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21023.0	NM_019460	54650.0	Mm.294662	NM_019460	ENSMUSG00000006527	Sfmbt1	4930442N21Rik|9330180L21Rik|AA536974|Sfmbt|Smr	Scm-like with four mbt domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-32111655-2	chr16	32111555	32111755	+	578.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	11853.0	NM_025892	66994.0	Mm.22990	NM_025892	ENSMUSG00000035790	Cep19	1500031L02Rik|AI428934|AL022620	centrosomal protein 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-11422678-2	chr2	11422578	11422778	+	724.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24178.0	NR_040615	77543.0	Mm.490670	NR_040615	ENSMUSG00000102674	8030442B05Rik	-	RIKEN cDNA 8030442B05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-31808120-4	chr11	31808054	31808254	+	935.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_102312, intron 1 of 4)	intron (NR_102312, intron 1 of 4)	16393.0	NR_102310	414116.0	Mm.150222	NR_102310	ENSMUSG00000085772	D630024D03Rik	-	RIKEN cDNA D630024D03 gene	ncRNA	2.40939611053433	3.09534723949455	2.23819307307149	2.1722364424857	1.30473154403433	2.16750270344895	2.64304706921436	3.36358325307693	0.117784510220143	0.895660584046267	0.998431161219273
Merged-chr2-91527088-2	chr2	91526988	91527188	+	711.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001165989, intron 1 of 43)	CpG	326.0	NM_001165989	75786.0	Mm.168478	NM_029437	ENSMUSG00000040549	Ckap5	3110043H24Rik|4930432B04Rik|D730027C18Rik|T25636|mKIAA0097	cytoskeleton associated protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-17490898-1	chr18	17490798	17490998	+	647.0	f0_balb.idr	Intergenic	Intergenic	90092.0	NR_045374	75162.0	Mm.60874	NR_045374		4930545E07Rik	-	RIKEN cDNA 4930545E07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135306713-3	chr4	135306611	135306811	+	768.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-33951.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-25825373-2	chr15	25825273	25825473	+	588.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17925.0	NM_001034851	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-118112544-2	chr10	118112444	118112644	+	666.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29243.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-58238034-3	chr15	58237951	58238151	+	714.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23159.0	NM_026346	67731.0	Mm.25683	NM_026346	ENSMUSG00000022358	Fbxo32	4833442G10Rik|AI430017|ATROGIN1|Gm20361|MAFbx	F-box protein 32	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-173735830-2	chr2	173735730	173735930	+	714.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-1741.0	NM_019806	56491.0	Mm.260456	NM_019806	ENSMUSG00000054455	Vapb	AI225786|AI840687|AI848259|D2Abb2e|R75548|VAP33b|Vamp33b	vesicle-associated membrane protein, associated protein B and C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-95292176-4	chr11	95292075	95292275	+	999.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195003, intron 5 of 14)	intron (NM_001195003, intron 5 of 14)	18071.0	NM_001195004	217127.0	Mm.90213	NM_177619	ENSMUSG00000038909	Kat7	Hbo1|Hboa|Myst2	K(lysine) acetyltransferase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97622689-2	chr11	97622675	97622875	+	719.333374	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045496, exon 4 of 4)	non-coding (NR_045496, exon 4 of 4)	6941.0	NM_175332	103551.0	Mm.24506	NM_175332	ENSMUSG00000043439	Epop	AA409164|AI413509|AW539173|E13|E130012A19Rik|esPRC2p48	elongin BC and polycomb repressive complex 2 associated protein	protein-coding	1.03988390933513	0.854722627098259	1.06144938398795	0.913540777492766	0.863415666103762	0.503475524886776	0.49577951540202	0.489204338070762	-2.33039784334695	0.170235791765333	1
Merged-chr16-37683886-2	chr16	37683786	37683986	+	630.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29518.0	NM_026610	68194.0	Mm.379154	NM_026610	ENSMUSG00000022820	Ndufb4	0610006N12Rik|1300010H20Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex 4	protein-coding	0.0441068962773833	-0.293516883349059	-0.297298802258314	0.198568845750314	0.0520914465125077	-0.292661644249576	-0.296466378341528	-0.299696573676026	-1.2859713972435	0.607949847981726	1
Merged-chr12-24758520-4	chr12	24758400	24758600	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50246.0	NM_009104	20135.0	Mm.99	NM_009104	ENSMUSG00000020649	Rrm2	AA407299|R2	ribonucleotide reductase M2	protein-coding	6.50500037163145	6.77185507551187	6.26856664140902	6.44504797409774	6.82023335844695	6.90439634852159	6.89524076209702	6.83059987597848	0.379372684869126	0.0408655647685667	0.288475510568248
Merged-chr19-5458408-1	chr19	5458308	5458508	+	875.0	f1_balb.idr	promoter-TSS (NM_001243307)	promoter-TSS (NM_001243307)	-845.0	NM_001243307	240514.0	Mm.329657	NM_198616	ENSMUSG00000095098	Ccdc85b	AI842788|BB115872	coiled-coil domain containing 85B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-57956459-4	chr4	57956356	57956556	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011660)	promoter-TSS (NM_011660)	-45.0	NM_011660	22166.0	Mm.260618	NM_011660	ENSMUSG00000028367	Txn1	ADF|AW550880|Trx1|Txn	thioredoxin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84840011-2	chr8	84839911	84840111	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001297606, intron 1 of 8)	MIRb|SINE|MIR	654.0	NM_001297607	19358.0	Mm.255539	NM_009010	ENSMUSG00000003813	Rad23a	2310040P19Rik|AL024030|HR23A|mHR23A	RAD23 homolog A, nucleotide excision repair protein	protein-coding	3.00314420663102	3.16588591142554	3.32982370799487	2.97838348781918	3.02732068714091	3.18851213731169	3.35438790688382	2.99328664584169	0.0380676357853745	0.948884227368096	0.998431161219273
Merged-chr13-107101157-4	chr13	107101054	107101254	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	78584.0	NR_015471	100040322.0	Mm.133867	NR_015471	ENSMUSG00000071181	3830408C21Rik	-	RIKEN cDNA 3830408C21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-95840697-1	chr8	95840597	95840797	+	542.0	f1_c57bl6.idr	intron (NM_172758, intron 10 of 11)	intron (NM_172758, intron 10 of 11)	12794.0	NM_172758	234595.0	Mm.29267	NM_172758	ENSMUSG00000036534	Slc38a7	D430050E18	solute carrier family 38, member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70907194-1	chr8	70907094	70907294	+	561.0	f1_c57bl6.idr	intron (NM_173013, intron 1 of 6)	intron (NM_173013, intron 1 of 6)	1220.0	NM_173013	270058.0	Mm.248559	NM_173013	ENSMUSG00000019261	Map1s	6430517J16Rik|Bpy2ip1|Map8|Mtap1s|VCY2IP1	microtubule-associated protein 1S	protein-coding	1.24386494052284	1.04758637357613	1.5062847832476	0.764797376765862	0.945219702187093	1.71452398169763	2.18547770313458	0.767281582128395	1.26202641029122	0.350310736435431	0.850815428289938
Merged-chr6-97511064-2	chr6	97510973	97511173	+	703.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	-23253.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0.0675779417069148	0.0869031542358135	0.0805967198967344	0.0757150410725119	0.222089426885922	0.606535114362963	0.881085447776591	0.397189023123141	4.14805906797834	0.0370727411766283	1
Merged-chr13-21716337-4	chr13	21716222	21716422	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178182)	promoter-TSS (NM_178182)	-90.0	NM_178182	319191.0	Mm.14767	NM_178182	ENSMUSG00000071516	Hist1h2ai	H2a-291A	histone cluster 1, H2ai	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-12797485-2	chr15	12797385	12797585	+	582.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27172.0	NM_029998	77877.0	Mm.207311	NM_029998	ENSMUSG00000022195	6030458C11Rik	-	RIKEN cDNA 6030458C11 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-107594156-4	chr11	107594061	107594261	+	994.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198298, intron 5 of 31)	intron (NM_198298, intron 5 of 31)	-43561.0	NR_105897	102465562.0		NR_105897	ENSMUSG00000098497	Mir6932	Gm27691|mmu-mir-6932	microRNA 6932	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81263900-2	chr10	81263800	81264000	+	621.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001285854)	TTS (NM_001285854)	3026.0	NM_025317	66047.0	Mm.43397	NM_025317	ENSMUSG00000034932	Mrpl54	0610008M19Rik|D10Sut1e	mitochondrial ribosomal protein L54	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-13670258-2	chr8	13670158	13670358	+	692.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 1 of 23)	intron (NM_009025, intron 1 of 23)	7329.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-30958343-1	chr5	30958243	30958443	+	889.0	f1_c57bl6.idr	exon (NM_016703, exon 5 of 9)	exon (NM_016703, exon 5 of 9)	1984.0	NM_001294302	50907.0	Mm.272414	NM_016703	ENSMUSG00000045302	Preb	C85705	prolactin regulatory element binding	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-140167249-3	chr4	140167129	140167329	+	784.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198610, intron 1 of 9)	ORR1E|LTR|ERVL-MaLR	24356.0	NR_153821	102636673.0	Mm.449180	NR_153821		Gm13029	Gm33676	predicted gene 13029	ncRNA	2.18315538658041	1.42249241152622	2.23579173063751	2.74268509199227	3.21388152421767	1.72509414146978	3.41994216682544	2.44697139974854	1.24981946762091	0.155635964686119	0.610928767307068
Merged-chr1-124112949-2	chr1	124112849	124113049	+	665.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-67390.0	NM_199021	269109.0	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117110696-4	chr11	117110640	117110840	+	923.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-4432.0	NR_029459	74136.0	Mm.272312	NM_028777	ENSMUSG00000020823	Sec14l1	1200017E04Rik|2810012L19Rik|Naa-35	SEC14-like lipid binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-80955530-3	chr5	80955430	80955630	+	798.700012	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65041.0	NM_001347367	319387.0	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-95781879-3	chr16	95781783	95781983	+	716.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	79476.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-34449546-4	chr12	34449432	34449632	+	943.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271386, intron 4 of 27)	intron (NM_001271386, intron 4 of 27)	79357.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3379898-2	chr19	3379798	3379998	+	839.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013495, intron 15 of 18)	intron (NM_013495, intron 15 of 18)	-8959.0	NM_001039658	17771.0	Mm.209941	NM_010841	ENSMUSG00000024905	Tesmin	Mtl5	testis expressed metallothionein like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-53272665-2	chr19	53272565	53272765	+	646.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC1|LINE|L1	-17460.0	NR_036590	69319.0	Mm.57452	NR_036590		1700001K23Rik	-	RIKEN cDNA 1700001K23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-47732161-3	chr19	47732061	47732261	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026377, intron 1 of 3)	G-rich|Low_complexity|Low_complexity	405.0	NM_026377	67788.0	Mm.181610	NM_026377	ENSMUSG00000025066	Sfr1	6330577E15Rik|Meir5	SWI5 dependent recombination repair 1	protein-coding	2.60503840272275	1.53038709323105	1.85672354697706	1.94680732282026	2.62696274060162	2.22562939778832	1.24847786779264	1.95685637964867	0.145969414469333	0.885664133130356	0.998431161219273
Merged-chr4-89311042-4	chr4	89310940	89311140	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007670)	promoter-TSS (NM_007670)	-8.0	NM_007670	12579.0	Mm.423094	NM_007670	ENSMUSG00000073802	Cdkn2b	AV083695|INK4b|MTS2|p15|p15(INK4b)|p15INK4b	cyclin dependent kinase inhibitor 2B	protein-coding	3.18919221365073	4.5846566201988	4.86315322133491	4.53631105153825	3.39124515894919	3.53133622654943	2.90851426525741	3.48561404224886	-1.48618230152998	0.00451442005902164	0.0618781552187452
Merged-chr4-43445608-2	chr4	43445508	43445708	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011571, intron 7 of 9)	intron (NM_011571, intron 7 of 9)	3331.0	NM_011571	21754.0	Mm.485441	NM_011571	ENSMUSG00000028458	Tesk1	AI326901	testis specific protein kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44528151-4	chr7	44528049	44528249	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_019866, exon 6 of 6)	exon (NM_019866, exon 6 of 6)	-3480.0	NM_146189	233199.0	Mm.358888	NM_146189	ENSMUSG00000038670	Mybpc2	-	myosin binding protein C, fast-type	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-134932412-2	chr4	134932312	134932512	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026780, intron 2 of 6)	RSINE1|SINE|B4	1432.0	NM_026780	68592.0	Mm.29989	NM_026780	ENSMUSG00000028821	Syf2	1110018L13Rik|Cbpin|D4Bwg1551e|Gcipip|Ntc31|mp29|p29	SYF2 homolog, RNA splicing factor (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-148452439-2	chr5	148452339	148452539	+	844.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52535.0	NM_007513	11987.0	Mm.275489	NM_007513	ENSMUSG00000041313	Slc7a1	4831426K01Rik|AI447493|Atrc-1|Atrc1|Cat1|Rec-1|Rev-1|mCAT-1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-60777923-2	chr18	60777823	60778023	+	858.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_020600, intron 4 of 4)	intron (NM_020600, intron 4 of 4)	3327.0	NM_020600	20044.0	Mm.43778	NM_020600	ENSMUSG00000024608	Rps14	2600014J02Rik|AL023078	ribosomal protein S14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-19108530-2	chr10	19108421	19108621	+	847.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger6a|DNA|TcMar-Tigger	-33228.0	NR_038021	100504265.0	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	1.86576523679252	1.56550308712205	2.13743288478494	2.45265373000874	2.18516212441156	1.57445307903075	2.15381675190793	2.19666910322261	0.00638705017702267	0.994611355377641	0.998431161219273
Merged-chr2-167635136-2	chr2	167635036	167635236	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-3131.0	NM_023230	66589.0	Mm.278783	NM_023230	ENSMUSG00000078923	Ube2v1	0610011J09Rik|AI256840|CROC-1|CROC1|D7Bwg1382e|UEV-1	ubiquitin-conjugating enzyme E2 variant 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-22304526-3	chr19	22304415	22304615	+	877.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001035239, intron 1 of 24)	intron (NM_001035239, intron 1 of 24)	-143693.0	NM_177341	226025.0	Mm.131943	NM_177341	ENSMUSG00000052387	Trpm3	6330504P12Rik|9330180E14|AU018608|B930001P07Rik|LTRPC3|MLSN2	transient receptor potential cation channel, subfamily M, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-90238816-4	chr11	90238707	90238907	+	976.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10669.0	NM_026178	67468.0	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-63384894-4	chr9	63384782	63384982	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7030.0	NM_011840	23938.0	Mm.325746	NM_011840	ENSMUSG00000058444	Map2k5	AI324775|AI428457|MEK5|Mapkk5|Prkmk5	mitogen-activated protein kinase kinase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-101836726-4	chr3	101836622	101836822	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172295)	promoter-TSS (NM_172295)	-499.0	NM_172295	242125.0	Mm.32900	NM_172295	ENSMUSG00000044313	Mab21l3	-	mab-21-like 3 (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-98683936-4	chr15	98683838	98684038	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6477.0	NM_172612	223881.0	Mm.274010	NM_172612	ENSMUSG00000054855	Rnd1	A830014L09Rik|Arhs	Rho family GTPase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-112752157-4	chr6	112752049	112752249	+	998.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080448, intron 12 of 21)	intron (NM_080448, intron 12 of 21)	-55479.0	NM_001167730	58186.0	Mm.103812	NM_021385	ENSMUSG00000030254	Rad18	2810024C04Rik|Rad18sc	RAD18 E3 ubiquitin protein ligase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-142752717-4	chr6	142752635	142752835	+	994.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3951.0	NM_009908	12764.0	Mm.3820	NM_009908	ENSMUSG00000030282	Cmas	AW208911|CMPNeu5Ac|D6Bwg0250e	cytidine monophospho-N-acetylneuraminic acid synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-70503826-4	chr9	70503719	70503919	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033604)	promoter-TSS (NM_033604)	-44.0	NM_033604	93836.0	Mm.29783	NM_033604	ENSMUSG00000032217	Rnf111	ARK|Arkadia	ring finger 111	protein-coding	4.80045419079847	5.08907217910163	4.97515310884935	4.99545187891182	5.48493590893264	4.85503499915904	5.19169659386773	4.87167222755519	0.201101381225158	0.52634020143223	0.94877971795044
Merged-chr10-127567269-2	chr10	127567169	127567369	+	785.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008512, exon 40 of 89)	exon (NM_008512, exon 40 of 89)	-32710.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-135377982-3	chr6	135377878	135378078	+	882.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001288627, intron 2 of 4)	intron (NM_001288627, intron 2 of 4)	10485.0	NM_001288627	13730.0	Mm.182785	NM_010128	ENSMUSG00000030208	Emp1	I-8-09|TMP	epithelial membrane protein 1	protein-coding	-0.00454383312681951	-0.248186174613056	-0.252389943176216	-0.25562472073681	0.290916433058921	0.237810550047044	-0.251463848464713	-0.255060148069034	2.08453849710694	0.399004523044709	1
Merged-chr11-54525173-2	chr11	54525073	54525273	+	859.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252494, intron 1 of 28)	L2a|LINE|L2	2328.0	NM_001252496	192786.0	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-144698589-3	chr3	144698482	144698682	+	962.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019464, intron 5 of 8)	intron (NM_019464, intron 5 of 8)	21753.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-3995925-4	chr15	3995822	3996022	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145930)	promoter-TSS (NM_145930)	-117.0	NR_045740	328489.0	Mm.447020	NR_045740	ENSMUSG00000097662	Gm2093	100039196|A630020A06	predicted gene 2093	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-113138373-2	chr12	113138273	113138473	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1863.0	NM_024223	68337.0	Mm.133825	NM_024223	ENSMUSG00000006356	Crip2	0610010I23Rik|AW743261|C77570|CRP2|CRP4|Crp|ESP1|Hlp	cysteine rich protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-37844072-4	chr13	37843987	37844187	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039188, intron 1 of 9)	intron (NM_001039188, intron 1 of 9)	16694.0	NM_001039188	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	3.52697481704525	3.16557002800202	2.80218310087795	3.64465625776891	3.49336657262268	3.18922217981588	3.38794001818541	4.09366427605864	0.406315839747896	0.472768291534588	0.926125823511231
Merged-chr6-124901256-4	chr6	124901148	124901348	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F1|LTR|ERVL-MaLR	10457.0	NM_008479	16768.0	Mm.4528	NM_008479	ENSMUSG00000030124	Lag3	CD223|LAG-3|Ly66	lymphocyte-activation gene 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-117089380-3	chr5	117089301	117089501	+	900.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26592.0	NM_001122666	71954.0	Mm.34456	NM_178622	ENSMUSG00000066900	Suds3	2400003N08Rik|2410008L21Rik|AU067672|mSds3	suppressor of defective silencing 3 homolog (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124478989-4	chr5	124478852	124479052	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030259)	promoter-TSS (NM_030259)	-717.0	NM_030259	80291.0	Mm.425280	NM_030259	ENSMUSG00000029401	Rilpl2	-	Rab interacting lysosomal protein-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-36888358-3	chr10	36888231	36888431	+	850.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-86213.0	NM_008229	15182.0	Mm.19806	NM_008229	ENSMUSG00000019777	Hdac2	D10Wsu179e|YAF1|Yy1bp|mRPD3	histone deacetylase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-51968124-3	chr11	51968060	51968260	+	792.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029976, intron 1 of 2)	intron (NM_029976, intron 1 of 2)	529.0	NM_029976	52626.0	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-67263056-4	chr17	67262959	67263159	+	976.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	91400.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-60261161-2	chr10	60261061	60261261	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16467.0	NM_001146123	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-32788355-4	chr17	32788274	32788474	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346705)	promoter-TSS (NM_001346705)	-87.0	NM_172458	208292.0	Mm.38813	NM_172458	ENSMUSG00000024298	Zfp871	4732483N19|9030612M13Rik|AI118577|AI265322|mKIAA3006	zinc finger protein 871	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-125542784-3	chr8	125542664	125542864	+	764.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357372, intron 1 of 21)	intron (NM_001357372, intron 1 of 21)	27099.0	NM_001357372	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	0.225856813867883	0.252142331284698	0.877277953894298	0.23699883324317	0.868761652527934	0.254048411069363	1.1927379474949	0.238161599966447	1.49048875910514	0.459114559682836	1
Merged-chr19-7045532-1	chr19	7045432	7045632	+	627.0	f1_balb.idr	Intergenic	Intergenic	-5506.0	NM_016737	20867.0	Mm.258633	NM_016737	ENSMUSG00000024966	Stip1	Hop|Sti1|p60	stress-induced phosphoprotein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31193979-4	chr14	31193811	31194011	+	968.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347583, intron 3 of 13)	intron (NM_001347583, intron 3 of 13)	12915.0	NM_022656	64652.0	Mm.298728	NM_022656	ENSMUSG00000021910	Nisch	1200007D05Rik|3202002H23Rik|AW494485|I-1|edsn	nischarin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-84827513-2	chr11	84827413	84827613	+	891.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177564, intron 1 of 6)	intron (NM_177564, intron 1 of 6)	1490.0	NM_177564	192970.0	Mm.192213	NM_177564	ENSMUSG00000034449	Dhrs11	-	dehydrogenase/reductase (SDR family) member 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114818470-4	chr11	114818378	114818578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19554.0	NM_181749	217302.0	Mm.269127	NM_181749	ENSMUSG00000034677	Gpr142	PGR2	G protein-coupled receptor 142	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118674502-4	chr9	118674455	118674655	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 11 of 27)	intron (NM_133721, intron 11 of 27)	-37137.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	6.63083370835644	6.65914715188057	6.81522751053389	6.60840091915543	4.4289469161423	4.19286453817321	4.19770108229209	4.74808160255876	-2.53710826402203	4.83605969617919e-22	7.38856307158608e-19
Merged-chr3-107113400-1	chr3	107113300	107113500	+	666.0	f0_balb.idr	3' UTR (NM_008417, exon 3 of 3)	3' UTR (NM_008417, exon 3 of 3)	11833.0	NM_008417	16490.0	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129541283-2	chr4	129541186	129541386	+	821.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008228, intron 1 of 13)	intron (NM_008228, intron 1 of 13)	1360.0	NM_008228	433759.0	Mm.202504	NM_008228	ENSMUSG00000028800	Hdac1	HD1|Hdac1-ps|MommeD5|RPD3	histone deacetylase 1	protein-coding	-1.8418762459921	-1.8125357239735	-1.82140854000656	-1.82869693527674	-1.56059678980999	-1.8106129477253	-1.81939992894326	-1.82739231600805	1.3620893379502	0.699511506488145	1
Merged-chr4-102509899-2	chr4	102509799	102509999	+	775.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_019840, intron 5 of 14)	intron (NM_019840, intron 5 of 14)	-60161.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-156198632-2	chr4	156198532	156198732	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_015783)	TTS (NM_015783)	-1144.0	NM_021604	11603.0	Mm.273098	NM_021604	ENSMUSG00000041936	Agrn	Agrin|nmf380	agrin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-124015548-3	chr9	124015397	124015597	+	912.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-6474.0	NM_009914	12771.0	Mm.57050	NM_009914	ENSMUSG00000035448	Ccr3	CC-CKR3|CKR3|Cmkbr1l2|Cmkbr3	chemokine (C-C motif) receptor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-9573409-3	chr1	9573302	9573502	+	778.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357376, intron 12 of 12)	intron (NM_001357376, intron 12 of 12)	25454.0	NM_001357376	76187.0	Mm.28514	NM_175236	ENSMUSG00000025911	Adhfe1	6330565B14Rik|AI043035|Adh8|HOT	alcohol dehydrogenase, iron containing, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96301333-3	chr3	96301228	96301428	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7359.0	NM_010186	14129.0	Mm.150	NM_010186	ENSMUSG00000015947	Fcgr1	AI323638|AV092959|CD64|FcgammaRI|IGGHAFC	Fc receptor, IgG, high affinity I	protein-coding	3.73878044760035	3.12941041346713	3.38213233007214	3.67593985143741	2.89804859784774	3.25646716825116	1.63826375116838	2.59193405506808	-1.32420270388286	0.0496104596781582	0.324668888301023
Merged-chr17-8315160-1	chr17	8315060	8315260	+	573.0	f1_c57bl6.idr	intron (NM_134114, intron 1 of 7)	MER21B|LTR|ERVL	-4042.0	NR_073374	75060.0	Mm.426530	NR_073374	ENSMUSG00000087478	4930506C21Rik	-	RIKEN cDNA 4930506C21 gene	ncRNA	-2.18361151404719	-2.02201993626881	-2.16403530460334	-2.1710062446989	-2.18164157430194	-2.15370992785044	-2.16211418110791	-2.16975844975469	-0.683654500252594	0.846597994014493	1
Merged-chr9-107888089-4	chr9	107888003	107888203	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028369)	promoter-TSS (NM_028369)	-26.0	NM_028369	72825.0	Mm.38037	NM_028369	ENSMUSG00000032583	Mon1a	2810468K17Rik	MON1 homolog A, secretory traffciking associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-117127572-3	chr13	117127470	117127670	+	869.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2455.0	NR_046023	623312.0	Mm.131279	NR_046023	ENSMUSG00000114792	Gm6416	-	predicted gene 6416	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-64088524-2	chr9	64088424	64088624	+	856.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_040743)	TTS (NR_040743)	7763.0	NR_040743	76814.0	Mm.243771	NR_040743		Scarletltr	2600006L11Rik	Scarletltr, erythroid developmental long intergenic non-protein coding transcript	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85481495-2	chr12	85481395	85481595	+	632.125	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	7605.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-50751619-2	chr16	50751519	50751719	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18846.0	NR_028300	68190.0	Mm.139089	NR_028300		Dubr	5330426P16Rik|Dum	Dppa2 upstream binding RNA	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-36762952-2	chr10	36762852	36763052	+	576.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253355, intron 4 of 5)	B4A|SINE|B4	-211592.0	NM_008229	15182.0	Mm.19806	NM_008229	ENSMUSG00000019777	Hdac2	D10Wsu179e|YAF1|Yy1bp|mRPD3	histone deacetylase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-28009985-3	chr19	28009907	28010107	+	663.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360357)	promoter-TSS (NM_001360357)	-234.0	NM_001360357	19726.0	Mm.313321	NM_011265	ENSMUSG00000040929	Rfx3	C230093O12Rik|MRFX3	regulatory factor X, 3 (influences HLA class II expression)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-128993167-4	chr4	128993052	128993252	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033966)	promoter-TSS (NM_001033966)	-72.0	NM_016895	11637.0	Mm.29460	NM_016895	ENSMUSG00000028792	Ak2	Ak-2|D4Ertd220e	adenylate kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3356250-2	chr12	3356150	3356350	+	665.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-8882.0	NM_008445	16570.0	Mm.7688	NM_008445	ENSMUSG00000020668	Kif3c	mKIAA4058	kinesin family member 3C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-77832789-4	chr15	77832694	77832894	+	960.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022410, intron 1 of 40)	intron (NM_022410, intron 1 of 40)	9381.0	NM_022410	17886.0	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-25606791-4	chr14	25606691	25606891	+	964.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 6 of 23)	CpG	3278.0	NM_001309430	100188919.0	Mm.473810	NM_001309430		Gm45915	Israa	predicted gene, 45915	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141147914-4	chr4	141147799	141147999	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172518)	promoter-TSS (NM_172518)	-23.0	NM_172518	213499.0	Mm.28865	NM_172518	ENSMUSG00000028920	Fbxo42	6720460I06Rik|mKIAA1332	F-box protein 42	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128284458-2	chr10	128284358	128284558	+	932.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019963, intron 19 of 23)	intron (NM_019963, intron 19 of 23)	13626.0	NM_031252	83430.0	Mm.125482	NM_031252	ENSMUSG00000025383	Il23a	IL-23|p19	interleukin 23, alpha subunit p19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-89101930-2	chr15	89101830	89102030	+	890.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163319, intron 19 of 24)	intron (NM_001163319, intron 19 of 24)	12892.0	NM_027905	223776.0	Mm.44763	NM_027905	ENSMUSG00000035757	Selenoo	1300018J18Rik|Selo	selenoprotein O	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-55184354-2	chr13	55184254	55184454	+	653.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25428.0	NM_008739	18193.0	Mm.168965	NM_008739	ENSMUSG00000021488	Nsd1	AI528500|KMT3B	nuclear receptor-binding SET-domain protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-94087423-2	chr16	94087323	94087523	+	602.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011377, intron 1 of 10)	intron (NM_011377, intron 1 of 10)	2163.0	NM_011377	20465.0	Mm.4775	NM_011377	ENSMUSG00000062713	Sim2	bHLHe15	single-minded family bHLH transcription factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-80567447-2	chr17	80567347	80567547	+	584.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360144, intron 1 of 9)	MMERVK10D3_I-int|LTR|ERVK	-3613.0	NM_001033443	381113.0	Mm.329216	NM_001033443	ENSMUSG00000033966	Cdkl4	AU067824|Gm942	cyclin-dependent kinase-like 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-105408184-2	chr7	105408084	105408284	+	570.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001033317, exon 6 of 6)	3' UTR (NM_001033317, exon 6 of 6)	3616.0	NM_001033317	233649.0	Mm.99556	NM_001033317	ENSMUSG00000030897	Cnga4	-	cyclic nucleotide gated channel alpha 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-44363605-4	chr19	44363516	44363716	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30290.0	NM_183216	329065.0	Mm.313583	NM_183216	ENSMUSG00000050195	Scd4	ACOD4	stearoyl-coenzyme A desaturase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-135245767-1	chr6	135245667	135245867	+	723.0	f1_balb.idr	intron (NM_001080553, intron 1 of 5)	AmnSINE1|SINE|Deu	2117.0	NM_001080552	14840.0	Mm.272306	NM_010352	ENSMUSG00000030206	Gsg1	-	germ cell associated 1	protein-coding	-0.180352770965712	-0.166704012486352	-0.17118684264628	0.435576184082894	0.286262808988818	-0.165691977796673	-0.170199075461358	0.123805143058443	0.145131129987727	0.951540089710456	1
Merged-chr8-56285055-4	chr8	56284959	56285159	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-9493.0	NM_008278	15446.0	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90479337-1	chr2	90479237	90479437	+	843.0	f1_balb.idr	promoter-TSS (NM_001135657)	promoter-TSS (NM_001135657)	-163.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.581740882967785	0.457752756479953	0.449787591937659	0.443622972094512	0.83089307262499	0.972625184889754	1.04509838746866	1.09879630593689	3.67493609703671	0.0326954946135849	1
Merged-chr11-23697071-2	chr11	23696971	23697171	+	573.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033654, intron 4 of 17)	intron (NM_001033654, intron 4 of 17)	31095.0	NM_028304	74467.0	Mm.29536	NM_028304	ENSMUSG00000020280	Pus10	2810013G11Rik|4933435A13Rik|AU014648|C77560|Ccdc139	pseudouridylate synthase 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52602995-4	chr13	52602875	52603075	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011518, intron 1 of 13)	intron (NM_011518, intron 1 of 13)	6093.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-89258878-3	chr6	89258781	89258981	+	855.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26844.0	NR_131021	75131.0	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	Gm44205	RIKEN cDNA 4930512J16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-17154191-3	chr11	17154097	17154297	+	692.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-5101.0	NM_024459	19058.0	Mm.41840	NM_024459	ENSMUSG00000033953	Ppp3r1	CaNB1|Cnb1|MCIP1	protein phosphatase 3, regulatory subunit B, alpha isoform (calcineurin B, type I)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-57181922-4	chr2	57181816	57182016	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040356)	promoter-TSS (NR_040356)	85.0	NR_040633	75279.0	Mm.401987	NR_040633	ENSMUSG00000086396	4930555B11Rik	-	RIKEN cDNA 4930555B11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-143059645-4	chr7	143059543	143059743	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133655, intron 1 of 7)	intron (NM_133655, intron 1 of 7)	-5957.0	NR_110354	97423.0	Mm.5250	NM_133790	ENSMUSG00000059277	R74862	-	expressed sequence R74862	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-38999823-2	chr2	38999723	38999923	+	615.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029687, intron 2 of 8)	intron (NM_029687, intron 2 of 8)	1514.0	NM_029687	76646.0	Mm.358777	NM_029687	ENSMUSG00000035295	Wdr38	1700123D08Rik	WD repeat domain 38	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-3548064-4	chr13	3547937	3548137	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008112, intron 1 of 10)	MLTR11A|LTR|ERVK	9962.0	NM_008112	14569.0	Mm.153226	NM_008112	ENSMUSG00000021218	Gdi2	GDI-B|GDIB|Gdi3	guanosine diphosphate (GDP) dissociation inhibitor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-128517938-3	chr8	128517824	128518024	+	897.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	158683.0	NR_035436	100316680.0		NR_035436	ENSMUSG00000084523	Mir1903	Mirn1903|mmu-mir-1903	microRNA 1903	ncRNA	1.32559601419659	0.386266397481264	0.376175432698106	0.368287267421122	1.27114528978219	0.388521201319847	1.04173250508643	0.369672001721247	0.582117123674981	0.761101181061184	1
Merged-chr1-39579349-4	chr1	39579244	39579444	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1997.0	NM_001033135	67702.0	Mm.28614	NM_001033135	ENSMUSG00000048234	Rnf149	1600023E10Rik|AV037261|C76763|Gm15832|Greul4	ring finger protein 149	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-98944795-4	chr13	98944689	98944889	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18405.0	NM_178716	238799.0	Mm.173286	NM_178716	ENSMUSG00000009470	Tnpo1	AU021749|D13Ertd688e|IPO2|Kpnb2|MIP|MIP1|TRN	transportin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122965690-3	chr5	122965593	122965793	+	876.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003953, intron 4 of 22)	intron (NM_001003953, intron 4 of 22)	23406.0	NM_001003953	30841.0	Mm.86406	NM_013910	ENSMUSG00000029475	Kdm2b	Cxxc2|Fbl10|Fbxl10|Jhdm1b|PCCX2	lysine (K)-specific demethylase 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-3114963-4	chr17	3114840	3115040	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134123)	promoter-TSS (NM_134123)	-32.0	NM_134123	106583.0	Mm.124373	NM_134123	ENSMUSG00000046201	Scaf8	A630086M08Rik|A930036P18Rik|AA408306|AI447644|AI448652|AU015035|Rbm16|mKIAA1116	SR-related CTD-associated factor 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-45145238-2	chr9	45145133	45145333	+	817.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013390, intron 1 of 4)	intron (NM_001013390, intron 1 of 4)	6191.0	NM_001013390	399548.0	Mm.335112	NM_001013390	ENSMUSG00000046480	Scn4b	Gm1471	sodium channel, type IV, beta	protein-coding	-2.18233058068552	-2.15536956715525	-2.16352280018114	-2.04193253143548	-2.18043796738662	-2.15360272754651	-2.16167708693786	-2.16902129354933	-0.683654500252594	0.846597994014493	1
Merged-chr3-105904457-4	chr3	105904430	105904630	+	889.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_009631, exon 1 of 2)	5' UTR (NM_009631, exon 1 of 2)	109.0	NM_009631	11542.0	Mm.235024	NM_009631	ENSMUSG00000000562	Adora3	A3AR|A3R|AA3R|ARA3|Gpcr2	adenosine A3 receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-59544924-4	chr4	59544816	59545016	+	974.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178164, intron 1 of 13)	intron (NM_178164, intron 1 of 13)	4448.0	NM_178164	230257.0	Mm.331640	NM_144904	ENSMUSG00000028382	Ptbp3	5830471K22Rik|AA407443|AI462022|AW107884|C86549|Rod1	polypyrimidine tract binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-34516622-2	chr19	34516522	34516722	+	735.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111100, intron 3 of 9)	intron (NM_001111100, intron 3 of 9)	10852.0	NM_001111100	16889.0	Mm.157545	NM_021460	ENSMUSG00000024781	Lipa	AA960673|Lal|Lip-1|Lip1	lysosomal acid lipase A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-17896786-2	chr17	17896686	17896886	+	628.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20C1_MM|LTR|ERVK	8962.0	NM_008039	14289.0	Mm.378918	NM_008039	ENSMUSG00000052270	Fpr2	E330010I07Rik|Fpr-rs2	formyl peptide receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115486872-2	chr5	115486772	115486972	+	939.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2388.0	NM_133760	75387.0	Mm.332616	NM_133760	ENSMUSG00000029524	Sirt4	4930596O17Rik	sirtuin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-54077216-2	chr10	54077116	54077316	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_038016, intron 1 of 2)	intron (NR_038016, intron 1 of 2)	1294.0	NR_038016	100502920.0	Mm.403982	NR_038016	ENSMUSG00000097069	Gm16998	-	predicted gene, 16998	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-135026391-1	chr6	135026291	135026491	+	656.5	f0_balb.idr	Intergenic	Intergenic	14779.0	NM_026360	67755.0	Mm.166524	NM_026360	ENSMUSG00000030204	Ddx47	4930588A18Rik|C77285	DEAD (Asp-Glu-Ala-Asp) box polypeptide 47	protein-coding	2.51657846832774	1.2857148515385	2.03392297651375	2.65535523801073	2.11828133416529	1.29237443624361	1.89885518797374	2.59441166030549	-0.388801521522204	0.706736824474944	0.998431161219273
Merged-chr1-138543687-3	chr1	138543584	138543784	+	885.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021605, intron 3 of 9)	RLTR11B|LTR|ERVK	76073.0	NM_021605	59125.0	Mm.143817	NM_021605	ENSMUSG00000026393	Nek7	2810460C19Rik|AU020186	NIMA (never in mitosis gene a)-related expressed kinase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-21641413-2	chr3	21641313	21641513	+	831.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	-435239.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-113551857-2	chr10	113551757	113551957	+	689.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	-622831.0	NM_001033474	382423.0	Mm.431239	NM_001033474	ENSMUSG00000074748	Atxn7l3b	4921506J03Rik|6230409E21Rik|AI315132	ataxin 7-like 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-32086172-2	chr5	32086072	32086272	+	990.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50300.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-54025827-4	chr5	54025738	54025938	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081103, intron 1 of 11)	intron (NM_001081103, intron 1 of 11)	27315.0	NM_001081103	116873.0	Mm.265985	NM_054083	ENSMUSG00000039156	Stim2	-	stromal interaction molecule 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-60772039-2	chr10	60771939	60772139	+	851.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029770, intron 13 of 16)	intron (NM_029770, intron 13 of 16)	-19257.0	NM_023596	71279.0	Mm.284462	NM_023596	ENSMUSG00000020100	Slc29a3	4933435C21Rik|AW987637|Ent3	solute carrier family 29 (nucleoside transporters), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-64832320-2	chr8	64832220	64832420	+	550.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178633, intron 2 of 14)	intron (NM_178633, intron 2 of 14)	17604.0	NM_178633	77113.0	Mm.350347	NM_178633	ENSMUSG00000031605	Klhl2	6030411N21Rik|8530402H02Rik|ABP-KELCH|AU020744|Mav	kelch-like 2, Mayven	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-61108680-4	chr18	61108582	61108782	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037859, intron 2 of 21)	intron (NM_001037859, intron 2 of 21)	3110.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-61923044-1	chr8	61922944	61923144	+	545.0	f1_balb.idr	Intergenic	MLTR11B|LTR|ERVK	-5043.0	NM_001293783	234311.0	Mm.275233	NM_144928	ENSMUSG00000037921	Ddx60	9830118M07	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-24349664-4	chr9	24349589	24349789	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	153451.0	NM_001359948	244745.0	Mm.38526	NM_172920	ENSMUSG00000043067	Dpy19l1	1100001I19Rik|6030402K12|AI225861|AW558481	dpy-19-like 1 (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-119948992-4	chr9	119948905	119949105	+	848.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028735, intron 9 of 28)	intron (NM_028735, intron 9 of 28)	11399.0	NM_028735	74052.0	Mm.189573	NM_028735	ENSMUSG00000032514	Ttc21a	4921538N17Rik|AA387572|Thm2	tetratricopeptide repeat domain 21A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124049675-2	chr5	124049567	124049767	+	890.1666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17407.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	2.31138622633732	2.91469099368574	1.42814777093952	2.43840854157089	2.61736119900791	3.18451918347017	2.53022883041518	2.04184010183337	0.570756164377426	0.50509310148154	0.940939014262092
Merged-chr8-77433288-5	chr8	77433058	77433258	+	723.320007	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030113, intron 3 of 22)	intron (NM_030113, intron 3 of 22)	-83898.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165318060-4	chr2	165317967	165318167	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080287, intron 1 of 20)	intron (NM_080287, intron 1 of 20)	-1716.0	NM_001302754	140579.0	Mm.35064	NM_080287	ENSMUSG00000017670	Elmo2	1190002F24Rik|CED-12	engulfment and cell motility 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-57692473-2	chr15	57692373	57692573	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-2194.0	NM_199449	387609.0	Mm.36557	NM_199449	ENSMUSG00000071757	Zhx2	Afr-1|Afr1|Raf|mKIAA0854	zinc fingers and homeoboxes 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-13232767-1	chr16	13232667	13232867	+	746.0	f0_balb.idr	Intergenic	MIRc|SINE|MIR	-23714.0	NM_001122667	239719.0	Mm.270643	NM_153588	ENSMUSG00000009569	Mkl2	Gt4-1|MRTF-B|Mrtfb|mKIAA1243	MKL/myocardin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-33003682-4	chr13	33003577	33003777	+	785.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009256)	promoter-TSS (NM_009256)	-864.0	NM_009256	20723.0	Mm.245041	NM_009256	ENSMUSG00000045827	Serpinb9	BB283241|CAP-3|CAP3|PI-9|PI9|Spi6|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-45018607-4	chr4	45018558	45018758	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285800)	promoter-TSS (NM_001285800)	49.0	NM_001285800	64424.0	Mm.282932	NM_022811	ENSMUSG00000028318	Polr1e	53kDa|AU042259|D030019D19Rik|Paf53|Praf1	polymerase (RNA) I polypeptide E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-102534224-4	chr4	102534126	102534326	+	853.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019840, intron 5 of 14)	intron (NM_019840, intron 5 of 14)	-35834.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83488708-4	chr6	83488595	83488795	+	897.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149734, intron 3 of 6)	intron (NR_149734, intron 3 of 6)	18274.0	NM_013764	27369.0	Mm.42234	NM_013764	ENSMUSG00000014554	Dguok	dGK|dGK1|dGK2|dGK3	deoxyguanosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-104387544-4	chr11	104387439	104387639	+	794.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359634, intron 3 of 14)	intron (NM_001359634, intron 3 of 14)	54752.0	NM_001081045	76719.0	Mm.136418	NM_001081045	ENSMUSG00000018412	Kansl1	1700081L11Rik|9430041J06Rik|mKIAA1267	KAT8 regulatory NSL complex subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-112058306-4	chr13	112058195	112058395	+	877.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	190359.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-66836258-2	chr9	66836158	66836358	+	874.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER5|LTR|ERV1	-1552.0	NM_026674	68318.0	Mm.284229	NM_026674	ENSMUSG00000053040	Aph1c	0610008A10Rik|APH-1b|Aph1b	aph1 homolog C, gamma secretase subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-4001932-1	chr13	4001832	4002032	+	569.0	f0_balb.idr	Intergenic	Intergenic	-56583.0	NM_031250	83428.0	Mm.313662	NM_031250	ENSMUSG00000044988	Ucn3	ucn III	urocortin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101364989-4	chr7	101364902	101365102	+	910.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040111, intron 1 of 33)	MIRc|SINE|MIR	-13120.0	NM_001040112	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	-0.183343417831608	-0.18860910221841	-0.345806527727752	-0.499328236280588	-0.502208552070947	-0.324094666194191	-0.496673787133654	-0.498969478140219	-2.24180530858091	0.36482460768123	1
Merged-chr9-108334615-2	chr9	108334515	108334715	+	600.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_016802, intron 4 of 5)	B1_Mus1|SINE|Alu	-4465.0	NM_001329528	14775.0	Mm.1090	NM_008160	ENSMUSG00000063856	Gpx1	AI195024|AL033363|CGPx|GPx-1|GSHPx-1|Gpx	glutathione peroxidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-143459795-3	chr7	143459707	143459907	+	668.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001161624, exon 2 of 4)	exon (NM_001161624, exon 2 of 4)	1243.0	NM_009876	12577.0	Mm.168789	NM_009876	ENSMUSG00000037664	Cdkn1c	AL024410|CDKI|Kip2|p57(kip2)|p57Kip2	cyclin-dependent kinase inhibitor 1C (P57)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134102599-4	chr6	134102489	134102689	+	854.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 2 of 8)	intron (NM_001303102, intron 2 of 8)	66889.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-125866256-4	chr2	125866167	125866367	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291002)	promoter-TSS (NM_001291002)	44.0	NM_001291002	69976.0	Mm.20216	NM_175154	ENSMUSG00000027207	Galk2	2810017M24Rik|AI327030|Gk2	galactokinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-99230479-2	chr5	99230339	99230539	+	571.5	f0_c57.idr|f1_balb.idr	intron (NM_181318, intron 8 of 13)	L1ME2|LINE|L1	22488.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-9914023-4	chr19	9913934	9914134	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14501.0	NM_016692	16319.0	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-92742238-3	chr7	92742204	92742404	+	816.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015510)	promoter-TSS (NR_015510)	590.0	NM_029494	75985.0	Mm.323004	NM_029494	ENSMUSG00000030643	Rab30	5033421K01Rik|AI323892|Rsb30	RAB30, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-194981091-2	chr1	194980991	194981191	+	665.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4132.0	NR_033564	320400.0	Mm.417608	NR_033564	ENSMUSG00000097325	Gm16897	C030002c11rik	predicted gene, 16897	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122903514-3	chr5	122903421	122903621	+	718.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003953, intron 12 of 22)	intron (NM_001003953, intron 12 of 22)	-3171.0	NM_013910	30841.0	Mm.86406	NM_013910	ENSMUSG00000029475	Kdm2b	Cxxc2|Fbl10|Fbxl10|Jhdm1b|PCCX2	lysine (K)-specific demethylase 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-25735597-2	chr1	25735497	25735697	+	745.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175642, intron 2 of 30)	L1_Mur2|LINE|L1	94110.0	NM_175642	210933.0	Mm.336569	NM_175642	ENSMUSG00000033569	Adgrb3	A830096D10Rik|Bai3	adhesion G protein-coupled receptor B3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141623715-2	chr7	141623615	141623815	+	573.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_007459, exon 15 of 22)	exon (NM_007459, exon 15 of 22)	3014.0	NR_106030	102466798.0		NR_106030	ENSMUSG00000098759	Mir7063	Gm27654|mmu-mir-7063	microRNA 7063	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-60538802-5	chr11	60538629	60538829	+	998.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172943, exon 1 of 4)	exon (NM_172943, exon 1 of 4)	1046.0	NM_172943	268420.0	Mm.262056	NM_172943	ENSMUSG00000042650	Alkbh5	AW050020|AW215868|Abh5|E130207K11|Ofoxd	alkB homolog 5, RNA demethylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-115879908-4	chr6	115879779	115879979	+	961.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167763, intron 5 of 28)	intron (NM_001167763, intron 5 of 28)	26351.0	NM_031177	81896.0	Mm.333335	NM_031177	ENSMUSG00000030323	Ift122	C86139|Wdr10|sopb	intraflagellar transport 122	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-85899550-3	chr1	85899495	85899695	+	636.133362	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022417, intron 1 of 5)	intron (NM_022417, intron 1 of 5)	5085.0	NM_022417	64294.0	Mm.29870	NM_022417	ENSMUSG00000026223	Itm2c	3110038L02Rik|BRI3|Bricd2c|E25|E25C|ITM3	integral membrane protein 2C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-100124898-4	chr13	100124813	100125013	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011420)	promoter-TSS (NM_011420)	58.0	NM_011420	20595.0	Mm.2025	NM_011420	ENSMUSG00000021645	Smn1	AI849087|Gemin1|Smn	survival motor neuron 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-67956770-1	chr8	67956670	67956870	+	631.0	f0_balb.idr	intron (NM_177698, intron 3 of 14)	intron (NM_177698, intron 3 of 14)	17804.0	NM_177698	234353.0	Mm.32525	NM_027626	ENSMUSG00000030465	Psd3	4931420C21Rik|AI661273|BC003498|D430018P08|EFA6D	pleckstrin and Sec7 domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-62544427-2	chr11	62544327	62544527	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5166.0	NM_028448	73139.0	Mm.390409	NM_028448	ENSMUSG00000018509	Cenpv	3110013H01Rik|AA671303|Prr6	centromere protein V	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-58723271-3	chr1	58723130	58723330	+	847.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355056, intron 1 of 8)	RLTR31D_MM|LTR|ERVK	-7322.0	NM_001293805	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-73038055-2	chr16	73037955	73038155	+	697.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019413, intron 27 of 28)	MTEb|LTR|ERVL-MaLR	374906.0	NM_019413	19876.0	Mm.310772	NM_019413	ENSMUSG00000022883	Robo1	AW494633|AW742721|DUTT1|Gm310	roundabout guidance receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-100628154-4	chr5	100628026	100628226	+	861.716675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46130.0	NM_027978	71883.0	Mm.260661	NM_027978	ENSMUSG00000029319	Coq2	2310002F18Rik|PHB:PPT	coenzyme Q2 4-hydroxybenzoate polyprenyltransferase	protein-coding	2.77792138975472	3.59135847629359	3.36148193137277	2.229375694207	1.40897481044513	1.86117209527216	1.24709690583956	1.72687531684342	-3.42330766827643	0.000294400734343616	0.00726765740222356
Merged-chr2-80026228-4	chr2	80026103	80026303	+	965.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355141, intron 2 of 15)	intron (NM_001355141, intron 2 of 15)	12699.0	NM_001355142	18573.0	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-33558487-4	chr2	33558382	33558582	+	692.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	82029.0	NM_010725	16917.0	Mm.39825	NM_010725	ENSMUSG00000038765	Lmx1b	Icst|LMX1.1|LMX1.2	LIM homeobox transcription factor 1 beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-112620649-4	chr12	112620575	112620775	+	982.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007421, intron 1 of 12)	intron (NM_007421, intron 1 of 12)	628.0	NM_007421	11565.0	Mm.3440	NM_007421	ENSMUSG00000011148	Adssl1	AI528595|Adss|Adss1	adenylosuccinate synthetase like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-79407980-1	chr15	79407880	79408080	+	617.0	f1_balb.idr	Intergenic	B2_Mm2|SINE|B2	-4677.0	NM_172608	223693.0	Mm.323358	NM_172608	ENSMUSG00000009035	Tmem184b	2610507A11|4732495E13Rik	transmembrane protein 184b	protein-coding	0.51540230173154	0.13755301604882	0.121574152945867	0.108782011416802	0.0899451127486739	2.07804686148505	0.125154859087945	0.767887150598571	3.51272105287881	0.062106309657775	0.369975752217528
Merged-chr7-125496012-4	chr7	125495871	125496071	+	861.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4429.0	NM_026330	67711.0	Mm.4467	NM_026330	ENSMUSG00000030750	Nsmce1	2510027N19Rik	NSE1 homolog, SMC5-SMC6 complex component	protein-coding	-0.953721354153451	-1.41025554057125	-1.42001056191158	-1.42802362688808	-1.44024889148474	-1.40814158675276	-1.41780223890411	-1.42658929208844	-2.11310844444413	0.543369238581748	1
Merged-chr7-25240311-2	chr7	25240211	25240411	+	620.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-2460.0	NM_001031667	606496.0	Mm.491101	NM_001031667	ENSMUSG00000057177	Gsk3a	2700086H06Rik	glycogen synthase kinase 3 alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120377120-2	chr11	120377020	120377220	+	786.833374	f1_balb.idr|f1_c57bl6.idr	exon (NM_027980, exon 3 of 10)	exon (NM_027980, exon 3 of 10)	1626.0	NM_027980	71885.0	Mm.274890	NM_027980	ENSMUSG00000025384	Faap100	2310003H01Rik	Fanconi anemia core complex associated protein 100	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-60878861-2	chr2	60878761	60878961	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_020296, intron 1 of 13)	MIR|SINE|MIR	2577.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-3346129-3	chr6	3346019	3346219	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53452.0	NM_010156	209086.0	Mm.196013	NM_010156	ENSMUSG00000047735	Samd9l	AA175286|ESTM25|mKIAA2005	sterile alpha motif domain containing 9-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-12276081-2	chr12	12275981	12276181	+	674.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001146119, intron 1 of 11)	intron (NM_001146119, intron 1 of 11)	13942.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-97676792-2	chr1	97676692	97676892	+	645.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14774.0	NM_133825	52392.0	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-84855478-4	chr11	84855385	84855585	+	914.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153144, intron 5 of 13)	intron (NM_153144, intron 5 of 13)	-14520.0	NR_131201	102635561.0	Mm.341797	NR_131197		Ggnbp2os	-	gametogenetin binding protein 2, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-40683670-2	chr19	40683570	40683770	+	832.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009848, intron 1 of 9)	intron (NM_009848, intron 1 of 9)	23900.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5610020-7	chr19	5609884	5610084	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_037603)	promoter-TSS (NR_037603)	110.0	NM_001199249	81601.0	Mm.228930	NM_178637	ENSMUSG00000024926	Kat5	AI839539|CPLA2|Htatip|Htatip1|PLIP|Tip55|Tip60	K(lysine) acetyltransferase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-105499591-3	chr5	105499492	105499692	+	996.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-19879.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102002337-3	chr12	102002222	102002422	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016856, intron 13 of 14)	intron (NM_016856, intron 13 of 14)	26348.0	NM_016856	51786.0	Mm.716	NM_016856	ENSMUSG00000041781	Cpsf2	100kDa|2610024B04Rik|AI662483|Cpsf|MCPSF|mKIAA1367	cleavage and polyadenylation specific factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-75777331-4	chr2	75777197	75777397	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54880.0	NM_172666	228061.0	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91966481-4	chr2	91966400	91966600	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-2937.0	NM_138306	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-98489971-4	chr7	98489894	98490094	+	903.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-4228.0	NM_001113379	434215.0	Mm.323057	NM_001113379	ENSMUSG00000090958	Lrrc32	AI426318|D11S833Eh|D7H11S833E|EG434215|Garp	leucine rich repeat containing 32	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-69374157-4	chr3	69373995	69374195	+	818.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178726, intron 1 of 3)	MLT1A0|LTR|ERVL-MaLR	57177.0	NM_178726	242083.0	Mm.40577	NM_178726	ENSMUSG00000027784	Ppm1l	3222401G13|5930404J21Rik|AI481720|AW045850|PP2C|PP2Cepsilon|Pp2ce|Ppp2ce|mKIAA4175	protein phosphatase 1 (formerly 2C)-like	protein-coding	0.0356419347280887	-0.31906778469525	-0.149427637986219	-0.326422169816711	0.381791702946775	-0.31813012563513	-0.322306789978994	-0.325863533164788	0.734645195694546	0.767642019153733	1
Merged-chr11-69098809-4	chr11	69098696	69098896	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011065)	promoter-TSS (NM_011065)	-153.0	NM_011065	18626.0	Mm.7373	NM_011065	ENSMUSG00000020893	Per1	Hftm|Per|m-rigui|mPer1	period circadian clock 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-67247489-2	chr17	67247389	67247589	+	738.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	106970.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97422744-2	chr6	97422644	97422844	+	923.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 3 of 23)	Lx5c|LINE|L1	36542.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-35661555-3	chr2	35661454	35661654	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001114125, exon 3 of 17)	exon (NM_001114125, exon 3 of 17)	-30440.0	NM_001001602	69601.0	Mm.29629	NM_001001602	ENSMUSG00000026883	Dab2ip	2310011D08Rik|AI480459|Aip1|mKIAA1743	disabled 2 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-34241401-4	chr19	34241284	34241484	+	829.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007392, exon 9 of 9)	3' UTR (NM_007392, exon 9 of 9)	8759.0	NM_001360720	76630.0	Mm.130952	NM_029682	ENSMUSG00000024776	Stambpl1	1700095N21Rik|8230401J17Rik|ALMalpha|AMSH-FP	STAM binding protein like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-120280403-4	chr14	120280350	120280550	+	791.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360380, intron 1 of 7)	intron (NM_001360380, intron 1 of 7)	4781.0	NM_001360380	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	0.909748082308288	1.20157061962361	0.393107005095888	0.38565678631729	1.3366189861605	0.40479660711812	0.39522368192376	0.577540621240739	-0.0918300895336631	0.959438456119509	1
Merged-chr7-115132555-3	chr7	115132468	115132668	+	721.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	181294.0	NR_040319	101786.0	Mm.395157	NR_040317	ENSMUSG00000108379	A730082K24Rik	AU044236	RIKEN cDNA A730082K24 gene	ncRNA	0.751247395634773	0.118557269621952	0.112415457129147	0.107667515140773	0.764070996425465	0.119939947873565	0.584555150751085	0.108497587514845	0.745804700235506	0.73073104025206	1
Merged-chr2-142766274-3	chr2	142766169	142766369	+	700.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355123, intron 12 of 26)	(A)n|Simple_repeat|Simple_repeat	135195.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55251340-2	chr19	55251240	55251440	+	633.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2029.0	NM_027976	433256.0	Mm.292056	NM_027976	ENSMUSG00000024981	Acsl5	1700030F05Rik|ACS2|ACS5|Facl5	acyl-CoA synthetase long-chain family member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120165086-2	chr8	120164986	120165186	+	607.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001163761, exon 12 of 12)	3' UTR (NM_001163761, exon 12 of 12)	12383.0	NM_001033980	436062.0	Mm.334852	NM_001033980	ENSMUSG00000042269	Fam92b	1700120B06Rik	family with sequence similarity 92, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97683788-2	chr11	97683688	97683888	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_139311, exon 20 of 20)	3' UTR (NM_139311, exon 20 of 20)	-2164.0	NM_001085500	217149.0	Mm.29659	NM_001085500	ENSMUSG00000078695	Cisd3	Mel-13|Mel13	CDGSH iron sulfur domain 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-10486633-2	chr15	10486533	10486733	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026396)	promoter-TSS (NM_026396)	595.0	NM_001289447	19355.0	Mm.38376	NM_011232	ENSMUSG00000022248	Rad1	mRAD1	RAD1 checkpoint DNA exonuclease	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-30549178-4	chr14	30549147	30549347	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_009388, exon 1 of 14)	5' UTR (NM_009388, exon 1 of 14)	116.0	NM_009388	21881.0	Mm.290692	NM_009388	ENSMUSG00000021957	Tkt	p68	transketolase	protein-coding	4.38432320837341	3.97418378320668	4.2398145763899	4.06947998631218	4.16116601106085	4.51810209667785	3.7915620962244	4.35558530564355	0.0661036934481217	0.874275663767746	0.998431161219273
Merged-chr8-7964829-3	chr8	7964729	7964929	+	849.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	695944.0	NM_010111	13642.0	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	1.42593359470591	1.1960580730194	1.14734915363969	3.07563417439221	1.26201680780849	0.892945235330581	0.860819467645426	2.72892217959662	-0.651875027059375	0.601909617684944	0.973429960802861
Merged-chr6-38531476-6	chr6	38531340	38531540	+	773.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3421.0	NM_025363	66117.0	Mm.158971	NM_025363	ENSMUSG00000019689	Fmc1	1110001J03Rik	formation of mitochondrial complex V assembly factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-62846041-4	chr11	62845954	62846154	+	855.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1069.0	NM_001033669	213980.0	Mm.482259	NM_001033669	ENSMUSG00000090173	Fbxw10	Fbw10|HREP|SM25H2|SM2SH2	F-box and WD-40 domain protein 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-119965244-3	chr4	119965137	119965337	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010657, intron 1 of 8)	intron (NM_010657, intron 1 of 8)	150559.0	NM_010657	16656.0	Mm.302758	NM_010657	ENSMUSG00000028634	Hivep3	2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3	human immunodeficiency virus type I enhancer binding protein 3	protein-coding	2.37307816045881	1.80104945227375	2.15006670879339	3.118045553188	3.50203627590532	2.69001399929476	2.47207574680907	2.39435056634706	0.757022660088485	0.346927580606395	0.847437850938575
Merged-chr15-58046794-4	chr15	58046677	58046877	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001042438)	TTS (NM_001042438)	-12483.0	NM_029418	75758.0	Mm.455792	NM_029418	ENSMUSG00000101892	9130401M01Rik	AI849328	RIKEN cDNA 9130401M01 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-79073613-1	chr15	79073513	79073713	+	727.0	f1_balb.idr	Intergenic	B2_Mm1a|SINE|B2	-1610.0	NM_145139	223691.0	Mm.206404	NM_145139	ENSMUSG00000033047	Eif3l	0610011H21Rik|D15N1e|Eif3eip|Eif3ip|Eif3s6ip|HSP-66Y|PAF67	eukaryotic translation initiation factor 3, subunit L	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-54072421-2	chr11	54072321	54072521	+	734.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3404.0	NM_019417	30794.0	Mm.21830	NM_019417	ENSMUSG00000020388	Pdlim4	Ril	PDZ and LIM domain 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-45949715-1	chr4	45949615	45949815	+	671.0	f1_balb.idr	intron (NM_198660, intron 37 of 37)	intron (NM_198660, intron 37 of 37)	-15620.0	NM_001290475	100121.0	Mm.275413	NM_146142	ENSMUSG00000035517	Tdrd7	5730495N10Rik|AI447470|PCTAIRE2BP	tudor domain containing 7	protein-coding	3.10805932001708	3.56179427726073	2.64530730373681	3.76857790290582	2.68674695278445	3.24384344742561	1.6256027596959	3.4366917173693	-0.702772637879405	0.329300508359742	0.831942889324137
Merged-chr2-177398276-3	chr2	177398156	177398356	+	854.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66486.0	NM_001177568	628308.0	Mm.460436	NM_001177568	ENSMUSG00000078866	Zfp970	Gm14420	zinc finger protein 970	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150854356-2	chr4	150854256	150854456	+	596.666687	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133753)	promoter-TSS (NM_133753)	560.0	NM_001356323	74155.0	Mm.318841	NM_133753	ENSMUSG00000028967	Errfi1	1300002F13Rik|AI788755|Mig-6|Mig6|RALT	ERBB receptor feedback inhibitor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-80163640-3	chr11	80163552	80163752	+	799.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172133, intron 5 of 10)	intron (NM_172133, intron 5 of 10)	9490.0	NM_172133	216991.0	Mm.341520	NM_172133	ENSMUSG00000020709	Adap2	Centa2	ArfGAP with dual PH domains 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-23720104-1	chr17	23720004	23720204	+	721.0	f1_balb.idr	Intergenic	Intergenic	-6232.0	NM_023058	268930.0	Mm.182193	NM_023058	ENSMUSG00000023908	Pkmyt1	6230424P17|AW209059|Myt1	protein kinase, membrane associated tyrosine/threonine 1	protein-coding	-1.11017114721831	-1.22822901294121	-1.23870131823113	-1.24730358160035	-1.25495804221669	-1.22595962069861	-0.779877491848762	-1.24576378057011	1.43438402897066	0.669240522494923	1
Merged-chr11-110472289-4	chr11	110472176	110472376	+	924.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356352, intron 1 of 11)	intron (NM_001356352, intron 1 of 11)	-6239.0	NM_001356347	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	4.04193224241782	3.84256602396245	1.91967031913518	3.61720403180823	2.83732712228869	3.20091104369215	2.17742206721568	3.57112119175768	-0.824685969850197	0.241069138636502	0.737718294174653
Merged-chr2-68861212-7	chr2	68861099	68861299	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172856)	promoter-TSS (NM_172856)	-242.0	NM_172856	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100514843-2	chr7	100514743	100514943	+	699.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153527)	promoter-TSS (NM_153527)	-28.0	NM_153527	69387.0	Mm.278554	NM_153527	ENSMUSG00000030708	Dnajb13	1700014P03Rik|Tsarg	DnaJ heat shock protein family (Hsp40) member B13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166127248-3	chr2	166127152	166127352	+	891.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252579, intron 2 of 20)	intron (NM_001252579, intron 2 of 20)	28033.0	NM_001355619	72043.0	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-19870578-4	chr4	19870474	19870674	+	698.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51847.0	NM_028746	74087.0	Mm.173833	NM_028746	ENSMUSG00000041052	Slc7a13	0610009O04Rik|AGT-1|AGT1|XAT2	solute carrier family 7, (cationic amino acid transporter, y+ system) member 13	protein-coding	-1.50561175621786	-1.47331375025452	-1.02203377115094	-1.49110398925286	-1.50334449591826	-1.47119716082604	-1.48086985756939	-1.48966786617048	-2.07776723614574	0.550394407909386	1
Merged-chr17-34031163-4	chr17	34031072	34031272	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011306)	promoter-TSS (NM_011306)	518.0	NM_001077709	14977.0	Mm.18556	NM_008202	ENSMUSG00000024327	Slc39a7	AA408174|AI117660|AL024048|H-2Ke4|H2-Ke4|Ke-4|Ke4|Ring5|Zip7	solute carrier family 39 (zinc transporter), member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-88287257-2	chr7	88287115	88287315	+	723.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001311790, intron 3 of 3)	intron (NM_001311790, intron 3 of 3)	9130.0	NM_001311790	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171786277-1	chr1	171786177	171786377	+	1000.0	f0_balb.idr	intron (NM_001360898, intron 3 of 4)	intron (NM_001360898, intron 3 of 4)	19145.0	NM_001360898	27218.0	Mm.103648	NM_013730	ENSMUSG00000015316	Slamf1	4933415F16|AA177906|CD150|CDw150|ESTM51|IPO-3|Slam	signaling lymphocytic activation molecule family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124492765-4	chr5	124492667	124492867	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_021430)	TTS (NM_021430)	9612.0	NM_029532	76167.0	Mm.156035	NM_029532	ENSMUSG00000029402	Snrnp35	6330548G22Rik	small nuclear ribonucleoprotein 35 (U11/U12)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-111735484-1	chr8	111735384	111735584	+	745.0	f1_balb.idr	intron (NM_009954, intron 1 of 6)	intron (NM_009954, intron 1 of 6)	-3348.0	NM_001198839	12927.0	Mm.3758	NM_009954	ENSMUSG00000031955	Bcar1	AI385681|Cas|Crkas	breast cancer anti-estrogen resistance 1	protein-coding	-2.18138529563533	-2.15523716995652	-2.1631445789866	-2.16963996020037	-2.05513010215571	-2.15352360143315	-2.16135451490766	-2.16847729006863	0.759018020146679	0.829933115115583	1
Merged-chr11-23823411-4	chr11	23823318	23823518	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52448.0	NM_009044	19696.0	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-32944208-4	chr12	32944135	32944335	+	941.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_044986, intron 2 of 5)	intron (NR_044986, intron 2 of 5)	9554.0	NR_044986	74076.0	Mm.50114	NR_044986	ENSMUSG00000097494	4933406C10Rik	-	RIKEN cDNA 4933406C10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117031716-2	chr8	117031616	117031816	+	800.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029686, intron 27 of 42)	ID_B1|SINE|B4	-38267.0	NM_026572	68133.0	Mm.258462	NM_026572	ENSMUSG00000034424	Gcsh	1100001L02Rik|5730591C18Rik	glycine cleavage system protein H (aminomethyl carrier)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-20697941-2	chr18	20697841	20698041	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019737, intron 5 of 8)	intron (NM_019737, intron 5 of 8)	-32681.0	NR_155534	102633478.0		NR_155534	ENSMUSG00000085595	Gm16090	-	predicted gene 16090	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-66387704-4	chr7	66387576	66387776	+	833.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146191, intron 1 of 33)	CpG	665.0	NM_146191	233328.0	Mm.33284	NM_146191	ENSMUSG00000015133	Lrrk1	AW319595|C230002E15Rik|D130026O16Rik|mKIAA1790	leucine-rich repeat kinase 1	protein-coding	1.83495891681586	2.29510749017069	1.26065275204669	1.79449149927874	2.06282070788006	2.31220134477737	2.12297372053049	2.05849779719712	0.785732683602705	0.419417460457236	0.89935136850338
Merged-chr11-50210769-3	chr11	50210680	50210880	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011018)	promoter-TSS (NM_011018)	40.0	NM_001290769	18412.0	Mm.40828	NM_011018	ENSMUSG00000015837	Sqstm1	A170|OSF-6|Osi|STAP|STONE14|p62	sequestosome 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-87616241-3	chr3	87616157	87616357	+	852.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1302.0	NM_001360197	213498.0	Mm.287267	NM_001003912	ENSMUSG00000041977	Arhgef11	PDZ-RhoGEF|Prg|RhoGEF|mKIAA0380	Rho guanine nucleotide exchange factor (GEF) 11	protein-coding	0.0957590385245591	0.592303157810137	0.107014996476276	0.102778825024296	0.361521395162994	0.601699667665913	0.559536438516469	0.103518456779867	1.31821747733237	0.52163304945513	1
Merged-chr18-10726254-7	chr18	10726142	10726342	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_144860, exon 1 of 21)	5' UTR (NM_144860, exon 1 of 21)	617.0	NM_144860	225164.0	Mm.21500	NM_144860	ENSMUSG00000024294	Mib1	DIP-1|E430019M12Rik|Mib|mKIAA1323	mindbomb E3 ubiquitin protein ligase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-5233565-4	chr16	5233481	5233681	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145362)	promoter-TSS (NM_145362)	-40.0	NM_145362	208211.0	Mm.34581	NM_145362	ENSMUSG00000039427	Alg1	HMAT1|HMT1	asparagine-linked glycosylation 1 (beta-1,4-mannosyltransferase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-147076639-4	chr5	147076552	147076752	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181730)	promoter-TSS (NM_181730)	-80.0	NM_080795	140887.0	Mm.272203	NM_080795	ENSMUSG00000016520	Lnx2	9630046H24|AW209022	ligand of numb-protein X 2	protein-coding	7.25339400454836	7.35941973914008	7.29461357499904	7.00192601092108	7.21002441526093	7.80924413687132	7.21441589348527	7.12249759952397	0.13529101249633	0.454247328506716	0.919120493489568
Merged-chr12-80944847-2	chr12	80944747	80944947	+	720.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347416)	promoter-TSS (NM_001347416)	552.0	NR_045057	100504661.0	Mm.442322	NR_045057	ENSMUSG00000112880	Gm20337	-	predicted gene, 20337	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-80638847-4	chr2	80638750	80638950	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027091)	promoter-TSS (NM_027091)	38.0	NM_027091	69482.0	Mm.29200	NM_027091	ENSMUSG00000026999	Nup35	2310006I24Rik|35kDa|5330402E05Rik|MP44|NO44	nucleoporin 35	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94035437-4	chr10	94035326	94035526	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053072)	promoter-TSS (NM_053072)	316.0	NM_001304720	215008.0	Mm.124177	NM_172538	ENSMUSG00000036099	Vezt	A630071D13Rik|AI848282	vezatin, adherens junctions transmembrane protein	protein-coding	3.86589964802136	3.59109258291846	3.07986647709944	3.85003372529393	2.9608244976441	3.77803048660631	3.31781188830189	3.39378942123947	-0.3880053380201	0.47705289717205	0.927980290875356
Merged-chr8-122476142-4	chr8	122476034	122476234	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153775)	promoter-TSS (NM_153775)	-9.0	NM_153775	66965.0	Mm.482288	NM_153775	ENSMUSG00000049482	Ctu2	2310061F22Rik|C16orf84|Ncs2	cytosolic thiouridylase subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-13250941-2	chr12	13250831	13251031	+	556.0	f0_c57.idr|f1_c57bl6.idr	Intergenic	RLTR49|LTR|ERVK	-1757.0	NM_134040	104721.0	Mm.251255	NM_134040	ENSMUSG00000037149	Ddx1	AA409185|DBP-RB	DEAD (Asp-Glu-Ala-Asp) box polypeptide 1	protein-coding	0.933762111894256	1.87420294895163	1.5323076746115	0.667470483430028	0.424759526218239	0.471348242904105	0.456646869965524	0.443764185992677	-4.91324118332317	0.00292402591209687	0.0447100206797003
Merged-chr13-37911389-2	chr13	37911289	37911489	+	698.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039188, intron 6 of 9)	intron (NM_001039188, intron 6 of 9)	22518.0	NM_001177869	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106817225-2	chr11	106817125	106817325	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166685, intron 16 of 18)	intron (NM_001166685, intron 16 of 18)	27973.0	NM_001166685	320162.0	Mm.30524	NM_177088	ENSMUSG00000018372	Cep95	4732496G21Rik|AI118346|AI448335|Ccdc45|D330027A14Rik|F630025I20Rik	centrosomal protein 95	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-103114740-4	chr4	103114626	103114826	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146254)	promoter-TSS (NM_146254)	336.0	NM_001286222	71148.0	Mm.288721	NM_027696	ENSMUSG00000028522	Mier1	4933425I22Rik|5830411K19Rik|er1	MEIR1 treanscription regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3986322-4	chr4	3986226	3986426	+	867.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	33337.0	NM_181989	242285.0	Mm.98096	NM_181989	ENSMUSG00000028236	Sdr16c5	Rdhe2|Scdr9	short chain dehydrogenase/reductase family 16C, member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-36695972-1	chr7	36695872	36696072	+	550.0	f1_c57bl6.idr	Intergenic	CpG	-2146.0	NM_172298	243931.0	Mm.44141	NM_172298	ENSMUSG00000021217	Tshz3	A630038G13Rik|Tsh3|Zfp537|mKIAA1474|teashirt3	teashirt zinc finger family member 3	protein-coding	-0.503792992628731	-0.376005327276512	-0.87008328719357	-0.872340093189806	-0.875522084709624	-0.861335472410615	-0.869437378796228	-0.871946133530848	-2.99496329377639	0.319200436281031	1
Merged-chr14-31164372-5	chr14	31164213	31164413	+	976.7999880000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138672, intron 1 of 68)	intron (NM_138672, intron 1 of 68)	4328.0	NM_138672	192187.0	Mm.220821	NM_138672	ENSMUSG00000042286	Stab1	FEEL-1|FELE-1|MFEEL-1|MS-1|STAB-1|mKIAA0246	stabilin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125448841-2	chr6	125448730	125448930	+	787.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6A|LTR|ERVK	45930.0	NM_007657	12527.0	Mm.210676	NM_007657	ENSMUSG00000030342	Cd9	Tspan29	CD9 antigen	protein-coding	0.728718109943095	0.56490858142863	0.81167641249479	2.50853162569642	1.08753138041705	0.5693357377006	0.54929136083219	1.44805781450162	-1.49024024210059	0.313996925725665	0.815793658479109
Merged-chr6-100647440-2	chr6	100647340	100647540	+	708.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_181590, intron 6 of 10)	RLTR20C2_MM|LTR|ERVK	23717.0	NM_181590	72171.0	Mm.256022	NM_181590	ENSMUSG00000035378	Shq1	2810403P18Rik|Grim-1	SHQ1 homolog (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-75837078-2	chr14	75836978	75837178	+	663.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	7886.0	NR_045294	100043189.0	Mm.426329	NR_045294		Gm4285	-	predicted gene 4285	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-32303858-3	chr4	32303761	32303961	+	929.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-113574.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	1.78023827204462	1.99571218285376	2.71054820227158	2.14978503419255	1.93269436103274	2.82781822444679	2.35132273177478	1.27067636030472	0.0329855497981524	0.972662774948821	0.998431161219273
Merged-chr18-9089584-2	chr18	9089484	9089684	+	782.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-123272.0	NM_008058	14370.0	Mm.184289	NM_008058	ENSMUSG00000036904	Fzd8	Fz8	frizzled class receptor 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80776317-4	chr7	80776226	80776426	+	914.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016721, intron 2 of 37)	RSINE1|SINE|B4	27005.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	3.83157934839525	3.8161208034227	3.00463152925403	4.26131372575848	3.27960078591577	3.98870884197989	3.15414671628615	3.87514349196172	-0.271924145165669	0.612242756468255	0.976300982470244
Merged-chr13-43804791-2	chr13	43804691	43804891	+	673.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	19679.0	NM_001289915	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-149349484-4	chr3	149349344	149349544	+	928.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	74707.0	NR_040591	381482.0	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-13026737-2	chr7	13026637	13026837	+	543.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011588, intron 3 of 16)	intron (NM_011588, intron 3 of 16)	2585.0	NM_011588	21849.0	Mm.15701	NM_011588	ENSMUSG00000005566	Trim28	AA408787|KAP-1|KRIP-1|MommeD9|Tif1b|Tif1beta	tripartite motif-containing 28	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3661422-4	chr12	3661257	3661457	+	765.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162465, intron 8 of 17)	intron (NM_001162465, intron 8 of 17)	88373.0	NM_007886	13528.0	Mm.286202	NM_007886	ENSMUSG00000071454	Dtnb	-	dystrobrevin, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-147959733-2	chr4	147959633	147959833	+	644.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	18838.0	NM_029841	77034.0	Mm.183076	NM_029841	ENSMUSG00000044496	2510039O18Rik	Kiaa2013	RIKEN cDNA 2510039O18 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-96911566-2	chr11	96911347	96911547	+	810.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_030248, intron 8 of 13)	intron (NM_030248, intron 8 of 13)	5067.0	NM_001308183	80280.0	Mm.28297	NM_030248	ENSMUSG00000018669	Cdk5rap3	1810007E24Rik|BC002318|C53|C81486|HSF-27|IC53|LZAP|MST016	CDK5 regulatory subunit associated protein 3	protein-coding	0.5943990230767	-0.0787971868072063	-0.0834791122192008	0.204550964371206	-0.0921623079537682	-0.0777400320005763	0.0908816791008797	0.208964119478571	-1.32092790851706	0.547276371895168	1
Merged-chr3-40698953-4	chr3	40698776	40698976	+	917.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175515, intron 14 of 15)	L2a|LINE|L2	-9995.0	NM_178386	73333.0	Mm.78691	NM_178386	ENSMUSG00000069041	Slc25a31	1700034J06Rik|Ant4|Sfec	solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 31	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141438307-1	chr7	141438207	141438407	+	548.0	f1_c57bl6.idr	promoter-TSS (NM_026646)	promoter-TSS (NM_026646)	-433.0	NM_001360724	68267.0	Mm.33729	NM_026646	ENSMUSG00000019082	Slc25a22	1300006L01Rik|AI060884|Gc1	solute carrier family 25 (mitochondrial carrier, glutamate), member 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80073267-2	chr10	80073167	80073367	+	929.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359635, intron 4 of 31)	intron (NM_001359635, intron 4 of 31)	2172.0	NM_001359636	216161.0	Mm.262102	NM_183426	ENSMUSG00000035673	Sbno2	BC019206|F730040C21|Sno|Stno	strawberry notch 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-55164017-2	chr1	55163917	55164117	+	620.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32772.0	NM_025283	19070.0	Mm.291037	NM_025283	ENSMUSG00000025979	Mob4	2610109B12Rik|Mobkl3|Phocn|Prei3	MOB family member 4, phocein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-59761076-3	chr13	59760973	59761173	+	720.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026921, intron 2 of 3)	intron (NM_026921, intron 2 of 3)	8716.0	NM_026921	69046.0	Mm.7884	NM_026921	ENSMUSG00000044792	Isca1	1810010A06Rik|Hbld2	iron-sulfur cluster assembly 1	protein-coding	1.94817502148641	1.10354762976627	2.12289161119767	1.4580814015165	1.96521321764811	1.10817866988863	2.14066224264835	1.61771153047886	0.127846071215012	0.912289961425261	0.998431161219273
Merged-chr2-156313397-1	chr2	156313297	156313497	+	852.0	f1_c57bl6.idr	promoter-TSS (NM_020255)	promoter-TSS (NM_020255)	-693.0	NM_020255	19018.0	Mm.389346	NM_020255	ENSMUSG00000046229	Scand1	2310003H23Rik|Leap1|PGC-2|Ppargc2	SCAN domain-containing 1	protein-coding	0.388152155254645	1.66129287340902	1.0725741461247	0.412117568125858	0.391798845896584	0.447169141553017	0.429856837171145	2.05809205584789	0.24109904834447	0.941364483381614	0.998431161219273
Merged-chr6-28424973-2	chr6	28424873	28425073	+	841.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007480, intron 3 of 5)	intron (NM_007480, intron 3 of 5)	1369.0	NM_007480	11844.0	Mm.389075	NM_007480	ENSMUSG00000020440	Arf5	-	ADP-ribosylation factor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-153767453-2	chr1	153767353	153767553	+	593.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18027.0	NM_011882	24014.0	Mm.259254	NM_011882	ENSMUSG00000066800	Rnasel	E230029I04Rik	ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71433116-2	chr8	71433012	71433212	+	809.75	f0_c57.idr|f1_c57bl6.idr	Intergenic	(TTAGGG)n|Simple_repeat|Simple_repeat	27100.0	NM_172756	234396.0	Mm.216549	NM_172756	ENSMUSG00000046295	Ankle1	8430438L13Rik|Ankrd41|C430003I23|Lem3	ankyrin repeat and LEM domain containing 1	protein-coding	6.82345453111889	6.73763382324029	7.61163010097753	6.57305804299628	1.4403528369146	1.81223636588933	1.70214998134964	1.60063816828269	-9.69597768874363	3.16051656726154e-20	4.06284404721471e-17
Merged-chr7-141459722-2	chr7	141459622	141459822	+	866.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_028142, exon 10 of 10)	non-coding (NR_028142, exon 10 of 10)	-1372.0	NM_001025103	213573.0	Mm.386851	NM_001025103	ENSMUSG00000048200	Cracr2b	6330520A15Rik|BC026645|Cracr2a|Efcab4|Efcab4a	calcium release activated channel regulator 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122421523-2	chr5	122421423	122421623	+	650.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019805)	promoter-TSS (NM_019805)	-921.0	NM_019805	56317.0	Mm.37341	NM_019805	ENSMUSG00000029466	Anapc7	APC7|AW545589	anaphase promoting complex subunit 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-32828505-1	chr12	32828405	32828605	+	596.5	f0_balb.idr	intron (NM_021524, intron 1 of 10)	intron (NM_021524, intron 1 of 10)	4389.0	NR_045032	100504486.0	Mm.440246	NR_045032		Gdap10	Gdap-ps	ganglioside-induced differentiation-associated-protein 10	ncRNA	1.71281620283071	2.09365712050848	1.68326681257574	1.80887858447611	2.53997612090751	1.24651007822808	3.1468877045628	1.96948587063531	1.39070831273872	0.157397855137117	0.614066594169238
Merged-chr6-123252974-4	chr6	123252863	123253063	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9144.0	NM_001163161	17474.0	Mm.441101	NM_010819	ENSMUSG00000030144	Clec4d	Clecsf8|Mpcl|mcl	C-type lectin domain family 4, member d	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-83002395-2	chr3	83002299	83002499	+	784.0	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-5325.0	NM_133862	99571.0	Mm.16422	NM_133862	ENSMUSG00000033860	Fgg	3010002H13Rik|AI256424	fibrinogen gamma chain	protein-coding	2.00073322904966	1.44033742846133	1.77968047410751	1.11685088742355	2.20816477378509	2.28319223033278	2.86260802945837	1.36611208673638	1.68483115253458	0.108885778551118	0.516913045788569
Merged-chr6-47829346-2	chr6	47829246	47829446	+	862.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_177882, intron 1 of 3)	PB1D9|SINE|Alu	1159.0	NM_177882	330301.0	Mm.128149	NM_177882	ENSMUSG00000051499	Zfp786	A730012O14Rik|Znf786	zinc finger protein 786	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127550162-2	chr10	127550057	127550257	+	802.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 66 of 88)	intron (NM_008512, intron 66 of 88)	-15598.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19230339-2	chr7	19230239	19230439	+	787.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_207525, intron 1 of 1)	intron (NM_207525, intron 1 of 1)	1950.0	NM_207525	403187.0	Mm.239583	NM_207525	ENSMUSG00000052214	Opa3	D630048P19Rik|Gm1425|Gm472	optic atrophy 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-90210948-2	chr9	90210848	90211048	+	760.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 10 of 12)	intron (NM_194334, intron 10 of 12)	47970.0	NM_001311115	108153.0	Mm.102141	NM_001003911	ENSMUSG00000032363	Adamts7	ADAM-TS7|ADAMTS7B	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 7	protein-coding	0.310776839003811	0.980303493640515	0.327105965898334	0.8855440687603	0.312302603856309	0.992066732506848	0.328847499739768	0.649790816400721	-0.3390272770673	0.856494085208624	1
Merged-chr13-104287052-4	chr13	104286964	104287164	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081020)	promoter-TSS (NM_001081020)	-771.0	NR_136938	108154.0	Mm.208125	NM_175496	ENSMUSG00000046169	Adamts6	A930019D11Rik|ADAM-TS6|b2b1879.1Clo|b2b2029Clo|b2b2182Clo|b2b2187.1Clo|b2b2228Clo	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-66816655-4	chr15	66816558	66816758	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009192, intron 1 of 8)	intron (NM_009192, intron 1 of 8)	15171.0	NM_001029841	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-108835943-4	chr12	108835859	108836059	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181328)	promoter-TSS (NM_181328)	-83.0	NM_181328	214663.0	Mm.266264	NM_181328	ENSMUSG00000021265	Slc25a29	C030003J19Rik|CACL|mCACL	solute carrier family 25 (mitochondrial carrier, palmitoylcarnitine transporter), member 29	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117495960-2	chr8	117495860	117496060	+	675.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2315.0	NM_172285	234779.0	Mm.192699	NM_172285	ENSMUSG00000034330	Plcg2	PLC-gamma-2|PLCgamma2|Plcg-2	phospholipase C, gamma 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-33898540-4	chr1	33898439	33898639	+	998.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177235, intron 1 of 6)	intron (NM_177235, intron 1 of 6)	9082.0	NM_177235	320705.0	Mm.336619	NM_177235	ENSMUSG00000042182	Bend6	B230209C24Rik	BEN domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126846965-2	chr8	126846865	126847065	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-2055.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-20743535-3	chr11	20743440	20743640	+	811.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1984.0	NM_181411	216549.0	Mm.356580	NM_181411	ENSMUSG00000049659	Aftph	-	aftiphilin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-65704980-4	chr7	65704852	65705052	+	908.216675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11535.0	NM_026795	68634.0	Mm.476828	NM_026795	ENSMUSG00000078681	Tm2d3	1110025I09Rik|5930422O05Rik|Blp2	TM2 domain containing 3	protein-coding	4.29175462811252	4.3634939108861	2.8180819890466	2.39503614674275	4.42723150530028	3.65679855696033	4.09819331784674	2.58690825733759	0.163610042701191	0.802089007273261	0.998431161219273
Merged-chr5-122637138-3	chr5	122637046	122637246	+	993.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6765.0	NM_001038839	18439.0	Mm.42026	NM_011027	ENSMUSG00000029468	P2rx7	AI467586|P2X(7)|P2X7R	purinergic receptor P2X, ligand-gated ion channel, 7	protein-coding	0.0379089611318241	-0.191301764741224	-0.195137140420233	-0.198078963163325	0.318656611421242	-0.0110025377050737	-0.0303154988772859	-0.0468231500915707	2.01378459608492	0.357735259966006	1
Merged-chr5-64808224-2	chr5	64808124	64808324	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008453, intron 1 of 5)	intron (NM_008453, intron 1 of 5)	4701.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-53748838-4	chr11	53748719	53748919	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA4A|LINE|L1	14835.0	NR_106131	102465772.0		NR_106131	ENSMUSG00000099153	Mir7671	Gm27802|mmu-mir-7671	microRNA 7671	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-88550373-4	chr4	88550266	88550466	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7879.0	NM_206870	242517.0	Mm.377261	NM_206870	ENSMUSG00000096011	Ifna15	Gm12597|Ifnaa|MuIFN-alpha-A	interferon alpha 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-30864087-3	chr5	30863991	30864191	+	885.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133350, intron 4 of 6)	intron (NM_133350, intron 4 of 6)	2284.0	NM_001310516	100732.0	Mm.332295	NM_133350	ENSMUSG00000029166	Mapre3	AI790651|EB2|EB3|EBF3|RP3	microtubule-associated protein, RP/EB family, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25679383-2	chr7	25679283	25679483	+	840.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1397.0	NM_001362154	232987.0	Mm.22849	NM_172148	ENSMUSG00000063439	B9d2	stumpy	B9 protein domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-45586613-4	chr17	45586519	45586719	+	775.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199113, intron 12 of 13)	B3A|SINE|B2	5774.0	NM_022880	63959.0	Mm.29744	NM_022880	ENSMUSG00000023942	Slc29a1	1200014D21Rik|AA407560|ENT1	solute carrier family 29 (nucleoside transporters), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-23141077-4	chr19	23140967	23141167	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010638)	promoter-TSS (NM_010638)	-159.0	NM_010638	16601.0	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|Gm9971	Kruppel-like factor 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-21648119-2	chr16	21648019	21648219	+	862.666626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001001881)	TTS (NM_001001881)	46546.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-127781067-3	chr1	127780966	127781166	+	776.311096	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028399, intron 2 of 8)	MIRb|SINE|MIR	6902.0	NM_028399	72949.0	Mm.268672	NM_028399	ENSMUSG00000026349	Ccnt2	2900041I18Rik|C81304|CycT2|CycT2a|CycT2b	cyclin T2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-120493015-3	chr6	120492926	120493126	+	763.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_033567, exon 1 of 1)	exon (NM_033567, exon 1 of 1)	781.0	NM_033567	94047.0	Mm.23088	NM_033567	ENSMUSG00000094626	Tmem121b	AW048664|Cecr6	transmembrane protein 121B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-79987156-4	chr10	79987081	79987281	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 1 of 4)	B3|SINE|B2	-1419.0	NM_007725	12798.0	Mm.157770	NM_007725	ENSMUSG00000004665	Cnn2	AA408047|AI324678|Calpo2	calponin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124888154-3	chr6	124888081	124888281	+	652.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013488)	promoter-TSS (NM_013488)	19.0	NM_013488	12504.0	Mm.2209	NM_013488	ENSMUSG00000023274	Cd4	L3T4|Ly-4	CD4 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-49190810-3	chr7	49190727	49190927	+	806.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111016, intron 2 of 38)	intron (NM_001111016, intron 2 of 38)	-28669.0	NR_154465	108167511.0	Mm.400599	NR_154465		9130015G15Rik	-	RIKEN cDNA 9130015G15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-40952472-2	chr15	40952372	40952572	+	875.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356998, intron 3 of 6)	intron (NM_001356998, intron 3 of 6)	-221229.0	NR_151516	100418302.0		NR_151516		4930555K19Rik	-	leucine rich repeat and sterile alpha motif containing 1 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-3328025-3	chr8	3327927	3328127	+	767.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25388.0	NM_001033378	319493.0	Mm.234565	NM_001033378	ENSMUSG00000074497	A430078G23Rik	-	RIKEN cDNA A430078G23 gene	protein-coding	1.7186162528122	2.45855407434563	1.14363795070758	1.34189724692957	1.73273706487767	1.94487700467074	2.00380405240438	1.94026310871311	0.336130951546998	0.754329254800103	0.998431161219273
Merged-chr3-138906403-2	chr3	138906322	138906522	+	670.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	164214.0	NM_019571	56224.0	Mm.31927	NM_019571	ENSMUSG00000028152	Tspan5	2810455A09Rik|4930505M03Rik|NET-4|Tm4sf9	tetraspanin 5	protein-coding	0.117908064000426	0.139986111030022	0.132807248517281	0.127233275557502	0.821974597572311	0.53012659392262	0.134394952104353	0.99051696759854	4.28920937060666	0.0363969156393917	1
Merged-chr5-61453235-2	chr5	61453135	61453335	+	601.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3C|LINE|L1	-355608.0	NM_019468	14380.0	Mm.347430	NM_019468	ENSMUSG00000089992	G6pd2	G6pdx-ps1|Gpd-2|Gpd2	glucose-6-phosphate dehydrogenase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-55351233-3	chr4	55351067	55351267	+	983.388855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009011, intron 1 of 9)	intron (NM_009011, intron 1 of 9)	1125.0	NM_009011	19359.0	Mm.196846	NM_009011	ENSMUSG00000028426	Rad23b	0610007D13Rik|AV001138|HR23B|mHR23B|p58	RAD23 homolog B, nucleotide excision repair protein	protein-coding	1.09689090627474	0.989524158700599	0.579196745385015	1.05443525170885	0.55816631689048	0.998380799240689	1.62117259225919	0.572069725555667	0.377042519010486	0.81145896447943	0.998431161219273
Merged-chr17-13144976-5	chr17	13144818	13145018	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13127.0	NM_199252	381058.0	Mm.390935	NM_199252	ENSMUSG00000067049	Unc93a	Unc93l|unc-93A	unc-93 homolog A (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-9726443-2	chr6	9726343	9726543	+	606.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TTTG)n|Simple_repeat|Simple_repeat	776424.0	NM_008751	18231.0	Mm.46954	NM_008751	ENSMUSG00000046178	Nxph1	C130005L03Rik	neurexophilin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-146946090-4	chr3	146945994	146946194	+	899.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302957, intron 18 of 21)	intron (NM_001302957, intron 18 of 21)	93727.0	NM_001302957	70892.0	Mm.187793	NM_027594	ENSMUSG00000036745	Ttll7	1110049N09Rik|4921517B04Rik|C630030B20|mTTLL7	tubulin tyrosine ligase-like family, member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-107754846-4	chr3	107754752	107754952	+	885.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007778, intron 3 of 8)	intron (NM_007778, intron 3 of 8)	5617.0	NM_001113530	12977.0	Mm.795	NM_007778	ENSMUSG00000014599	Csf1	C87615|Csfm|MCSF|op	colony stimulating factor 1 (macrophage)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-61985290-4	chr9	61985165	61985365	+	687.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028748, intron 2 of 7)	intron (NM_028748, intron 2 of 7)	-38466.0	NM_024245	71819.0	Mm.259374	NM_024245	ENSMUSG00000032254	Kif23	3110001D19Rik|C87313|CHO1|Knsl5|MKLP-1|MKLP1	kinesin family member 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-50238678-4	chr11	50238589	50238789	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008521)	promoter-TSS (NM_008521)	-157.0	NR_132733	17001.0	Mm.245151	NM_008521	ENSMUSG00000020377	Ltc4s	-	leukotriene C4 synthase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-55131272-1	chr11	55131172	55131372	+	542.0	f1_balb.idr	intron (NM_172258, intron 8 of 10)	intron (NM_172258, intron 8 of 10)	20434.0	NM_172258	215332.0	Mm.87054	NM_172258	ENSMUSG00000049491	Slc36a3	PAT3|TRAMD2|tramdorin2	solute carrier family 36 (proton/amino acid symporter), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-86528295-4	chr1	86528186	86528386	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008972, intron 1 of 4)	CpG-365	1729.0	NM_001360830	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78301771-2	chr15	78301671	78301871	+	605.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001287389, intron 1 of 11)	B4A|SINE|B4	3950.0	NM_007781	12984.0	Mm.1940	NM_007781	ENSMUSG00000071714	Csf2rb2	AIC2A|BetaIl3|Bil3|Csfgmrb|Il3r|Il3rb|Il3rb2	colony stimulating factor 2 receptor, beta 2, low-affinity (granulocyte-macrophage)	protein-coding	-2.05752322593321	-2.15521190974092	-2.16307242109104	-2.16952927915413	-2.17938029103484	-2.15350850414045	-2.16129297361887	-2.16837350464794	-0.683654500252594	0.846597994014493	1
Merged-chr1-92935663-4	chr1	92935564	92935764	+	711.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015525, intron 1 of 1)	intron (NR_015525, intron 1 of 1)	1256.0	NM_011796	23830.0	Mm.294315	NM_011796	ENSMUSG00000026270	Capn10	AW049679|Capn8|mKIAA1845	calpain 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-41105313-4	chr9	41105262	41105462	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176860, intron 1 of 13)	intron (NM_176860, intron 1 of 13)	-25856.0	NM_001357412	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	2.11283300102464	3.77527866857662	3.07171426845768	2.98480709914225	2.4244761271913	3.29560331024259	3.18728426594224	2.55348006019432	-0.342404765041644	0.62935411788985	0.981201918729827
Merged-chr14-78849213-4	chr14	78849149	78849349	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173758)	promoter-TSS (NM_173758)	71.0	NM_173758	219189.0	Mm.159651	NM_027906	ENSMUSG00000058997	Vwa8	1300010F03Rik|4932416F07Rik|AI957255|Kiaa0564|mKIAA0564	von Willebrand factor A domain containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21162288-2	chr9	21162188	21162388	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	-3426.0	NM_183408	18577.0	Mm.191749	NM_019798	ENSMUSG00000032177	Pde4a	D9Ertd60e|Dpde2	phosphodiesterase 4A, cAMP specific	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-11187776-4	chr8	11187696	11187896	+	871.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-125009.0	NM_009932	12827.0	Mm.181021	NM_009932	ENSMUSG00000031503	Col4a2	Col4a-2	collagen, type IV, alpha 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128808805-2	chr2	128808705	128808905	+	578.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9498.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-85671113-4	chr15	85671015	85671215	+	770.31665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-32658.0	NR_110483	102800312.0	Mm.33117	NR_110483		Lncppara	Lincppara|Mirlet7bhg|linc-Ppara	long noncoding RNA near Ppara	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-9100643-4	chr5	9100546	9100746	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081029)	promoter-TSS (NM_001081029)	-91.0	NM_001081029	652925.0	Mm.439954	NM_001081029	ENSMUSG00000079659	Tmem243	4930420K17Rik|E030031F02Rik	transmembrane protein 243, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-144964102-4	chr5	144963997	144964197	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038627, intron 1 of 17)	intron (NM_001038627, intron 1 of 17)	1733.0	NM_001038627	75788.0	Mm.27735	NM_029438	ENSMUSG00000038780	Smurf1	4930431E10Rik|mKIAA1625	SMAD specific E3 ubiquitin protein ligase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-95783849-4	chr9	95783754	95783954	+	898.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033210, intron 5 of 15)	intron (NM_001033210, intron 5 of 15)	-33496.0	NM_011643	22063.0	Mm.149633	NM_011643	ENSMUSG00000032839	Trpc1	Mtrp1|Trp1|Trrp1	transient receptor potential cation channel, subfamily C, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127675199-3	chr7	127675115	127675315	+	775.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347652, intron 5 of 5)	LTR41B|LTR|ERVL	-33272.0	NR_030428	791073.0		NR_030428	ENSMUSG00000076454	Mir762	Mirn762|mir-762|mmu-mir-762	microRNA 762	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-51091612-4	chr14	51091500	51091700	+	976.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021472, intron 1 of 1)	intron (NM_021472, intron 1 of 1)	523.0	NM_021472	58809.0	Mm.202665	NM_021472	ENSMUSG00000021876	Rnase4	C730049F20Rik|Rab1	ribonuclease, RNase A family 4	protein-coding	5.3528184762559	5.65725436298624	5.03909562585315	4.43400134658799	4.8903977602541	5.06931620849427	4.42287895942982	4.82073963633415	-0.439746750178201	0.215085268658834	0.705944860566832
Merged-chr8-77467026-2	chr8	77466926	77467126	+	693.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030113, intron 1 of 22)	intron (NM_030113, intron 1 of 22)	-50030.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-138657548-2	chr5	138657448	138657648	+	712.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CGTG)n|Simple_repeat|Simple_repeat	34689.0	NM_183025	243308.0	Mm.36612	NM_183025	ENSMUSG00000056014	A430033K04Rik	C86988	RIKEN cDNA A430033K04 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118254359-4	chr11	118254298	118254498	+	911.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5806.0	NM_011180	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-82041890-4	chr11	82041795	82041995	+	987.138916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA6|LINE|L1	-3817.0	NM_013654	20306.0	Mm.341574	NM_013654	ENSMUSG00000035373	Ccl7	MCP-3|Scya7|fic|marc|mcp3	chemokine (C-C motif) ligand 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-35941548-2	chr16	35941448	35941648	+	831.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030253, intron 2 of 10)	B3|SINE|B2	-2521.0	NM_001013371	209200.0	Mm.390852	NM_001013371	ENSMUSG00000049502	Dtx3l	AU042200|BC023741	deltex 3-like, E3 ubiquitin ligase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-72413470-4	chr1	72413375	72413575	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	106054.0	NM_001357519	22596.0	Mm.246952	NM_009533	ENSMUSG00000026187	Xrcc5	AI314015|CTC85|CTCBF|Ku80|Ku86	X-ray repair complementing defective repair in Chinese hamster cells 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-101661790-1	chr4	101661690	101661890	+	577.0	f1_balb.idr	Intergenic	Intergenic	14007.0	NM_175036	230514.0	Mm.4756	NM_175036	ENSMUSG00000035212	Leprot	LEPR|OB-RGRP|Obrgrp|VPS55	leptin receptor overlapping transcript	protein-coding	1.36679028243912	0.796229653748097	1.39162311268873	0.95390805159174	1.4658052288317	1.00846052256575	1.40391164388663	0.957645915975488	0.315722831814019	0.813997742378219	0.998431161219273
Merged-chr13-5922902-4	chr13	5922789	5922989	+	878.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61400.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-48878130-2	chr7	48878030	48878230	+	996.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013368, intron 3 of 12)	intron (NM_001013368, intron 3 of 12)	2911.0	NM_001013368	108961.0	Mm.240566	NM_001013368	ENSMUSG00000046179	E2f8	4432406C08Rik|AA410048	E2F transcription factor 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-75504442-2	chr18	75504342	75504542	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_201354, intron 9 of 11)	intron (NM_201354, intron 9 of 11)	-10203.0	NR_045879	100038353.0	Mm.440724	NR_045879	ENSMUSG00000097712	Gm10532	-	predicted gene 10532	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-121079423-2	chr7	121079323	121079523	+	681.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	-4015.0	NM_139310	246190.0	Mm.221073	NM_139310	ENSMUSG00000034990	Otoa	-	otoancorin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80624409-2	chr10	80624309	80624509	+	893.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_134002, intron 1 of 10)	intron (NM_134002, intron 1 of 10)	1629.0	NM_134002	103236.0	Mm.29873	NM_134002	ENSMUSG00000003345	Csnk1g2	2810429I12Rik|AI463719	casein kinase 1, gamma 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-183977483-2	chr1	183977383	183977583	+	930.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56515.0	NM_028516	73363.0	Mm.50115	NM_028516	ENSMUSG00000044854	1700056E22Rik	-	RIKEN cDNA 1700056E22 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69368942-6	chr11	69368859	69369059	+	972.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146019, intron 1 of 39)	CpG	467.0	NM_146019	216848.0	Mm.178246	NM_146019	ENSMUSG00000018474	Chd3	2600010P09Rik|AF020312|Chd7|Prp7|Prp9-1	chromodomain helicase DNA binding protein 3	protein-coding	2.78943370042134	2.25762737669131	1.86533685078678	2.46643883938957	2.61029706657317	2.27376779570003	1.67453911678835	2.47891266816019	-0.188510139206436	0.826360823758948	0.998431161219273
Merged-chr10-130311926-5	chr10	130311876	130312076	+	783.049988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10876.0	NM_183264	67596.0	Mm.131264	NM_183264	ENSMUSG00000034833	Tespa1	5830405N20Rik|A430001F24Rik|AI450549	thymocyte expressed, positive selection associated 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-8842427-4	chr13	8842342	8842542	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039388, intron 9 of 13)	intron (NM_001039388, intron 9 of 13)	28602.0	NM_001039389	207615.0	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-121431611-4	chr1	121431549	121431749	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029955, intron 1 of 23)	intron (NM_029955, intron 1 of 23)	582.0	NM_029955	70829.0	Mm.25788	NM_027567	ENSMUSG00000026339	Ccdc93	4633402D15Rik|9230102M16Rik	coiled-coil domain containing 93	protein-coding	4.3748038338603	4.62779838646331	4.17117295016992	4.62329208339963	3.82932282125606	3.72927269856697	3.86069248133188	3.95467506256221	-0.824526031309431	0.0468673594319164	0.313523192112567
Merged-chr2-104685597-4	chr2	104685513	104685713	+	939.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177190, intron 7 of 9)	intron (NM_177190, intron 7 of 9)	26549.0	NM_177190	320554.0	Mm.249065	NM_177190	ENSMUSG00000027175	Tcp11l1	C130096D04Rik	t-complex 11 like 1	protein-coding	2.87395166411392	1.34061390732317	3.05279140927597	1.26760712059314	2.83444814287323	2.39947446770607	1.58801682407165	2.75590715582731	0.148082648307418	0.88453375080756	0.998431161219273
Merged-chr1-34463029-4	chr1	34462937	34463137	+	985.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011206, intron 2 of 14)	intron (NM_011206, intron 2 of 14)	3291.0	NM_011206	19253.0	Mm.361	NM_011206	ENSMUSG00000026126	Ptpn18	FLP1|HSCF|PTP-HSCF|PTP-K1|Ptpk1	protein tyrosine phosphatase, non-receptor type 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-21895731-4	chr19	21895625	21895825	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	117385.0	NM_031997	83921.0	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-66153639-2	chr5	66153539	66153739	+	987.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1685.0	NM_001127382	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	-0.294083384950798	-0.277963382818132	0.430175288204581	-0.287290034214969	-0.293070061983337	-0.276782190008417	0.44311158986884	-0.286577643912737	0.0410571026119648	0.987250810110592	1
Merged-chr9-110533025-4	chr9	110532900	110533100	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081340, intron 1 of 20)	CpG	403.0	NM_001081340	235626.0	Mm.288949	NM_001081340	ENSMUSG00000044791	Setd2	4921524K10Rik|BC031601|KMT3A	SET domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-43787676-3	chr5	43787578	43787778	+	741.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5529.0	NM_178729	242960.0	Mm.25794	NM_178729	ENSMUSG00000039753	Fbxl5	Fbl4|Fir4	F-box and leucine-rich repeat protein 5	protein-coding	1.0660469549653	0.558756297281251	1.39853909639997	0.539499806177983	1.07770631771291	0.561174193159583	1.41353986851288	0.540981468615398	0.0412564626526023	0.980561447439547	0.998431161219273
Merged-chr1-132237646-2	chr1	132237546	132237746	+	668.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001311104, intron 4 of 4)	intron (NM_001311104, intron 4 of 4)	11332.0	NR_132336	213409.0	Mm.426321	NM_001033250	ENSMUSG00000079330	Lemd1	4930540I23Rik|6430514M23Rik|AI428128|LEMP-1	LEM domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4102557-1	chr19	4102457	4102657	+	553.0	f1_c57bl6.idr	intron (NM_008851, intron 1 of 22)	B3|SINE|B2	1935.0	NM_008851	18739.0	Mm.1860	NM_008851	ENSMUSG00000024851	Pitpnm1	DRES9|Mpt-1|Nir-2|PITPnm 1|Pitpnm|R75447|Rd9|RdgB|RdgB1	phosphatidylinositol transfer protein, membrane-associated 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94474388-4	chr10	94474280	94474480	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 2 of 4)	intron (NM_001359762, intron 2 of 4)	-40477.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-67047958-2	chr9	67047858	67048058	+	578.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164250, intron 1 of 8)	intron (NM_001164250, intron 1 of 8)	1255.0	NM_001164255	22003.0	Mm.121878	NM_024427	ENSMUSG00000032366	Tpm1	AA986836|AI854628|TM2|TPM1kappa|Tm3|Tmpa|Tpm-1|alpha-TM	tropomyosin 1, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-73003219-4	chr2	73003106	73003306	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22760.0	NM_001018042	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-92473831-4	chr1	92473735	92473935	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024197)	promoter-TSS (NM_024197)	-77.0	NM_024197	67273.0	Mm.248778	NM_024197	ENSMUSG00000026260	Ndufa10	2900053E13Rik	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-84627856-2	chr17	84627756	84627956	+	732.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172256, intron 1 of 12)	B4A|SINE|B4	1357.0	NM_172256	213575.0	Mm.246119	NM_172256	ENSMUSG00000024253	Dync2li1	4933404O11Rik|CGI-60|D2lic|LIC3|mD2LIC	dynein cytoplasmic 2 light intermediate chain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-103224505-2	chr11	103224405	103224605	+	890.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016896, intron 13 of 15)	intron (NM_016896, intron 13 of 15)	-6073.0	NM_177801	328019.0	Mm.189646	NM_177801	ENSMUSG00000044787	Spata32	4933400C05Rik|VAD1.2	spermatogenesis associated 32	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141541451-2	chr4	141541351	141541551	+	607.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur2|SINE|Alu	-2854.0	NM_019763	56381.0	Mm.299906	NM_019763	ENSMUSG00000040761	Spen	Mint|mKIAA0929	spen family transcription repressor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-77820895-4	chr18	77820792	77820992	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013831, intron 1 of 14)	L1ME2|LINE|L1	-24502.0	NR_152167	619308.0	Mm.490456	NM_001033812		F830208F22Rik	-	RIKEN cDNA F830208F22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-4450671-2	chr12	4450571	4450771	+	715.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010881, intron 1 of 22)	MLTR14|LTR|ERV1	26511.0	NM_010881	17977.0	Mm.301039	NM_010881	ENSMUSG00000020647	Ncoa1	KAT13A|NCoA-1|NRC-1|SRC-1|SRC-a|SRC1|bHLHe74|mNRC-1	nuclear receptor coactivator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3482267-4	chr4	3482161	3482361	+	919.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54829.0	NR_037306	100499523.0		NR_037306	ENSMUSG00000094253	Mir3471-2	mmu-mir-3471-2	microRNA 3471-2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150138989-2	chr4	150138889	150139089	+	776.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_019741, intron 7 of 13)	intron (NM_019741, intron 7 of 13)	-9983.0	NM_001085529	435818.0	Mm.359648	NM_001085529	ENSMUSG00000062064	Slc2a7	-	solute carrier family 2 (facilitated glucose transporter), member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-57920358-2	chr15	57920258	57920458	+	852.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081396, intron 3 of 20)	intron (NM_001081396, intron 3 of 20)	8159.0	NM_001356310	210544.0	Mm.390835	NM_199300	ENSMUSG00000022364	Tbc1d31	4B3|D330013L20Rik|Gm85|Wdr67	TBC1 domain family, member 31	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-108244420-4	chr11	108244316	108244516	+	832.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011101, intron 2 of 16)	intron (NM_011101, intron 2 of 16)	99472.0	NM_011101	18750.0	Mm.222178	NM_011101	ENSMUSG00000050965	Prkca	AI875142|Pkca	protein kinase C, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-82338049-4	chr15	82337947	82338147	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355546, intron 2 of 8)	intron (NM_001355546, intron 2 of 8)	779.0	NM_001355546	17939.0	Mm.20325	NM_008669	ENSMUSG00000022453	Naga	-	N-acetyl galactosaminidase, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-66360455-4	chr9	66360360	66360560	+	982.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145617, intron 1 of 77)	intron (NM_145617, intron 1 of 77)	10010.0	NM_145617	235439.0	Mm.244179	NM_145617	ENSMUSG00000038664	Herc1	2810449H11Rik|B230218H07|D130015N03Rik|tbl	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-125777218-3	chr2	125777109	125777309	+	889.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177608, intron 1 of 17)	intron (NM_177608, intron 1 of 17)	5661.0	NM_177608	70354.0	Mm.138091	NM_133725	ENSMUSG00000035093	Secisbp2l	3110001I20Rik|AI504340|C630011I23	SECIS binding protein 2-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-86732269-4	chr17	86732175	86732375	+	990.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21589.0	NM_010137	13819.0	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	3.13852555157104	1.2515259865528	1.91692984487402	1.67098610974814	3.29741931913835	1.56061374275794	2.60007043526877	1.68041854328621	0.531908863822675	0.603070606544721	0.973565005745828
Merged-chr2-91255945-2	chr2	91255845	91256045	+	657.833313	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289678)	promoter-TSS (NM_001289678)	-220.0	NM_001289677	80708.0	Mm.236650	NM_028733	ENSMUSG00000027257	Pacsin3	4921507A02Rik|6330413E15Rik|AW413130	protein kinase C and casein kinase substrate in neurons 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-35771882-3	chr16	35771814	35772014	+	627.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_152314, intron 1 of 8)	ORR1D1|LTR|ERVL-MaLR	1528.0	NM_175111	66667.0	Mm.45272	NM_175111	ENSMUSG00000022849	Hspbap1	3830421G21Rik	Hspb associated protein 1	protein-coding	1.09997132237789	2.06780890153408	1.38084149119798	1.68499813658915	2.04574039496706	2.30506630696297	1.74558908713481	2.05583838680957	1.29239261123169	0.223524458639068	0.714791840691861
Merged-chr3-133094926-1	chr3	133094826	133095026	+	710.0	f0_balb.idr	intron (NM_027927, intron 1 of 6)	intron (NM_027927, intron 1 of 6)	-2887.0	NM_001356309	67553.0	Mm.304899	NM_026231	ENSMUSG00000028018	Gstcd	4933434L15Rik	glutathione S-transferase, C-terminal domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-52422615-2	chr10	52422515	52422715	+	620.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030250, intron 1 of 4)	intron (NM_030250, intron 1 of 4)	5068.0	NM_030250	52014.0	Mm.199964	NM_030250	ENSMUSG00000023068	Nus1	1600027K07Rik|AU019165|AW538011|BC003223|D10Ertd438e	NUS1 dehydrodolichyl diphosphate synthase subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167638831-2	chr2	167638731	167638931	+	569.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-6826.0	NM_023230	66589.0	Mm.278783	NM_023230	ENSMUSG00000078923	Ube2v1	0610011J09Rik|AI256840|CROC-1|CROC1|D7Bwg1382e|UEV-1	ubiquitin-conjugating enzyme E2 variant 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5081075-3	chr17	5080974	5081174	+	846.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 2 of 19)	intron (NM_001085355, intron 2 of 19)	86000.0	NM_001085355	239985.0	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-105728359-2	chr12	105728259	105728459	+	699.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030187, intron 5 of 17)	PB1D10|SINE|Alu	22377.0	NM_030187	78801.0	Mm.36006	NM_030187	ENSMUSG00000041323	Ak7	4930502N02Rik|AK 7	adenylate kinase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-6628035-2	chr17	6627935	6628135	+	661.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7110.0	NR_028305	100040525.0	Mm.472852	NR_028305		Tmem181c-ps	100040596|Tmem181d-ps	transmembrane protein 181C, pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-88760736-3	chr15	88760622	88760822	+	876.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181412, intron 2 of 2)	B2_Mm1a|SINE|B2	9011.0	NM_181412	223773.0	Mm.396622	NM_181412	ENSMUSG00000034333	Zbed4	1700009F06Rik	zinc finger, BED type containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-11512451-3	chr2	11512415	11512615	+	858.8214109999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177758, intron 1 of 14)	ORR1C1|LTR|ERVL-MaLR	-10425.0	NM_001177757	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-62206200-4	chr10	62206099	62206299	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197996, intron 1 of 7)	intron (NM_197996, intron 1 of 7)	-11972.0	NR_106122	102465767.0		NR_106122	ENSMUSG00000099185	Mir7662	Gm27876|mmu-mir-7662	microRNA 7662	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-27321285-2	chr3	27321185	27321385	+	601.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009425, intron 1 of 4)	intron (NM_009425, intron 1 of 4)	4208.0	NM_009425	22035.0	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-31170084-3	chr6	31169970	31170170	+	978.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110470, intron 2 of 2)	intron (NR_110470, intron 2 of 2)	48404.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-34898069-2	chr1	34897969	34898169	+	650.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A2|LTR|ERVL-MaLR	48080.0	NM_001357425	226971.0	Mm.292751	NM_145516	ENSMUSG00000026123	Plekhb2	2310009M15Rik|AU018239|Evt2|Phdc|evt-2	pleckstrin homology domain containing, family B (evectins) member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-105263814-4	chr4	105263717	105263917	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	106470.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-88244106-2	chr1	88243987	88244187	+	686.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001281466, intron 22 of 41)	intron (NM_001281466, intron 22 of 41)	17067.0	NM_001281466	100040766.0	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	Heatr7b1	maestro heat-like repeat family member 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-40167949-2	chr15	40167849	40168049	+	767.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_155350, exon 3 of 3)	non-coding (NR_155350, exon 3 of 3)	5342.0	NR_155349	102636151.0	Mm.321976	NR_155349	ENSMUSG00000115367	Gm33301	-	predicted gene, 33301	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-64023049-4	chr9	64022948	64023148	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008542)	promoter-TSS (NM_008542)	-989.0	NM_008542	17130.0	Mm.325757	NM_008542	ENSMUSG00000036867	Smad6	Madh6|b2b390Clo	SMAD family member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-116972420-4	chr13	116972309	116972509	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081009, intron 3 of 26)	PB1D9|SINE|Alu	53107.0	NM_001081009	52552.0	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	4.12715820435338	4.49231562044983	4.86520824842373	3.46945420934463	3.0209974889211	2.67587307291657	4.33530653718663	3.57367603863202	-1.06199477944163	0.0541181585321755	0.341023984279959
Merged-chr16-24027557-3	chr16	24027428	24027628	+	711.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38676.0	NM_009744	12053.0	Mm.347398	NM_009744	ENSMUSG00000022508	Bcl6	Bcl5	B cell leukemia/lymphoma 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80136394-2	chr10	80136294	80136494	+	567.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001195268, exon 4 of 9)	exon (NM_001195268, exon 4 of 9)	993.0	NM_001195268	100503659.0	Mm.485395	NM_015761	ENSMUSG00000035640	Cbarp	9630008F14|Dos|R29144/1	calcium channel, voltage-dependent, beta subunit associated regulatory protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53072050-2	chr4	53071950	53072150	+	676.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 24 of 49)	intron (NM_013454, intron 24 of 49)	60170.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-124125763-4	chr9	124125646	124125846	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009917, exon 2 of 2)	3' UTR (NM_009917, exon 2 of 2)	4203.0	NM_009917	12774.0	Mm.14302	NM_009917	ENSMUSG00000079227	Ccr5	AM4-7|CD195|Cmkbr5	chemokine (C-C motif) receptor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-45743811-2	chr17	45743711	45743911	+	900.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_152153, intron 1 of 4)	intron (NR_152153, intron 1 of 4)	9305.0	NR_152153	433111.0	Mm.213441	NR_152153	ENSMUSG00000097727	F630040K05Rik	-	RIKEN cDNA F630040K05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-46192841-4	chr9	46192737	46192937	+	792.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027498, intron 6 of 24)	intron (NM_027498, intron 6 of 24)	-35793.0	NM_009692	11806.0	Mm.26743	NM_009692	ENSMUSG00000032083	Apoa1	Alp-1|Apoa-1|Brp-14|Ltw-1|Lvtw-1|Sep-1|Sep-2|Sep2|apo-AI|apoA-I	apolipoprotein A-I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-90001917-2	chr3	90001817	90002017	+	690.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_045749)	TTS (NR_045749)	3157.0	NR_045749	100503469.0	Mm.440636	NR_045749	ENSMUSG00000105552	Gm19710	-	predicted gene, 19710	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-84878820-2	chr11	84878720	84878920	+	633.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077636, intron 1 of 1)	intron (NM_001077636, intron 1 of 1)	1375.0	NM_027388	70325.0	Mm.390414	NM_027388	ENSMUSG00000045140	Pigw	2610044A17Rik|Gwt1	phosphatidylinositol glycan anchor biosynthesis, class W	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-42128180-2	chr19	42128080	42128280	+	834.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027106, intron 1 of 2)	MIR|SINE|MIR	813.0	NM_027106	69534.0	Mm.30060	NM_027106	ENSMUSG00000018821	Avpi1	2310008N12Rik|AA410041|VIT32|esu|mVIT32	arginine vasopressin-induced 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-84770532-2	chr12	84770432	84770632	+	648.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023409, intron 1 of 3)	intron (NM_023409, intron 1 of 3)	2580.0	NM_023409	67963.0	Mm.282556	NM_023409	ENSMUSG00000021242	Npc2	2700012J19Rik|AA408070|AU045843|HE1	NPC intracellular cholesterol transporter 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-44729178-4	chr10	44729075	44729275	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L4_C_Mam|LINE|RTE-X	-270427.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117420835-1	chr10	117420735	117420935	+	1000.0	f1_balb.idr	Intergenic	B2_Mm2|SINE|B2	26600.0	NR_152734	102634600.0	Mm.399106	NR_152734	ENSMUSG00000112344	Gm32141	-	predicted gene, 32141	ncRNA	-0.689490068136384	-0.924765769739751	-0.933196722546235	-0.935087199199616	-0.579629653037796	-0.922295978522143	-0.932654620762523	-0.778660670176222	0.93542112734704	0.752314007535959	1
Merged-chr10-43849717-4	chr10	43849622	43849822	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23815.0	NR_131055	71018.0	Mm.410796	NR_131055	ENSMUSG00000111342	4933404K13Rik	-	RIKEN cDNA 4933404K13 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-85489901-4	chr13	85489795	85489995	+	954.866699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-200409.0	NM_145452	218397.0	Mm.259653	NM_145452	ENSMUSG00000021549	Rasa1	Gap|RasGAP|Rasa	RAS p21 protein activator 1	protein-coding	3.17610118087342	3.69130710113489	3.36320888485605	3.34362569759773	2.31683104676325	1.9959194149121	3.13192859599534	3.03536369788788	-1.19882740278438	0.0687545569151957	0.393567353944904
Merged-chr13-45101956-4	chr13	45101826	45102026	+	959.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-99830.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	2.74073823432117	1.30609487640255	3.51147001732049	1.2300452409959	2.22841459844692	2.23753905057142	2.75555898595512	1.92116939857454	-0.501203933711126	0.619869038336912	0.978663311075481
Merged-chr11-88242010-2	chr11	88241954	88242154	+	987.0	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	37666.0	NM_001291271	64656.0	Mm.168680	NM_024174	ENSMUSG00000023723	Mrps23	D11Bwg1153e|MRP-S23|Rpms23|S23mt	mitochondrial ribosomal protein S23	protein-coding	2.3727036949997	2.35317815968246	2.43792876705934	2.20167247288234	3.76514366553607	3.65447498001522	3.24768646118737	2.87628610425077	2.00161358732264	0.00305273213541029	0.0459661293469131
Merged-chr12-85338994-1	chr12	85338894	85339094	+	1000.0	f0_balb.idr	intron (NM_145138, intron 1 of 21)	CpG	368.0	NM_145138	217718.0	Mm.29071	NM_145138	ENSMUSG00000034290	Nek9	C130021H08Rik	NIMA (never in mitosis gene a)-related expressed kinase 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-55500234-2	chr12	55500134	55500334	+	775.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7587.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-34827129-4	chr11	34827030	34827230	+	989.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027411, intron 2 of 11)	Tigger7|DNA|TcMar-Tigger	6511.0	NM_027411	70385.0	Mm.194368	NM_027411	ENSMUSG00000069910	Spdl1	1700018I02Rik|2600001J17Rik|2810049B11Rik|AA409762|Ccdc99	spindle apparatus coiled-coil protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-100039007-4	chr5	100038913	100039113	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026421)	promoter-TSS (NM_026421)	209.0	NM_016690	50926.0	Mm.389579	NM_016690	ENSMUSG00000029328	Hnrnpdl	AA407431|AA959857|D5Ertd650e|D5Wsu145e|Hnrnpdl1|Hnrpdl|JKTBP|hnRNP DL|hnRNP-DL	heterogeneous nuclear ribonucleoprotein D-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19019629-2	chr7	19019529	19019729	+	674.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008260, intron 1 of 1)	L2a|LINE|L2	3910.0	NM_008260	15377.0	Mm.42260	NM_008260	ENSMUSG00000040891	Foxa3	Hnf-3g|Hnf3g|Tcf-3g|Tcf3g	forkhead box A3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-119713593-1	chr13	119713493	119713693	+	1000.0	f0_balb.idr	intron (NM_175538, intron 3 of 3)	intron (NM_175538, intron 3 of 3)	23242.0	NM_001291439	208715.0	Mm.61526	NM_145942	ENSMUSG00000093930	Hmgcs1	B130032C06Rik	3-hydroxy-3-methylglutaryl-Coenzyme A synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-35775997-2	chr16	35775897	35776097	+	934.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_152314, intron 1 of 8)	intron (NR_152314, intron 1 of 8)	5611.0	NM_175111	66667.0	Mm.45272	NM_175111	ENSMUSG00000022849	Hspbap1	3830421G21Rik	Hspb associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-97061688-4	chr5	97061589	97061789	+	977.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080708, intron 11 of 15)	intron (NM_080708, intron 11 of 15)	49907.0	NM_001359910	231474.0	Mm.332505	NM_198422	ENSMUSG00000055725	Paqr3	6330415A20Rik|AY424292|RKTG	progestin and adipoQ receptor family member III	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26793305-2	chr17	26793205	26793405	+	847.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_172149)	TTS (NM_172149)	12226.0	NM_172149	224630.0	Mm.21795	NM_172149	ENSMUSG00000024191	Bnip1	2010005M06Rik|5930429G21Rik|Sec20	BCL2/adenovirus E1B interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-39073026-1	chr12	39072926	39073126	+	544.0	f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	289315.0	NM_001163154	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-54699629-3	chr6	54699524	54699724	+	949.944458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001289740, exon 3 of 3)	3' UTR (NM_001289740, exon 3 of 3)	18000.0	NM_001289740	68235.0	Mm.233860	NM_026629	ENSMUSG00000038065	Mturn	2410066E13Rik|AI448550|B230212L03Rik	maturin, neural progenitor differentiation regulator homolog (Xenopus)	protein-coding	3.83057358209638	3.90992294183153	3.67402142106407	3.18193433975403	1.43704630240627	1.67595158525546	1.28361729365893	1.22951847298458	-5.32378868407506	2.25865437238565e-06	0.000128636084619698
Merged-chr3-51293821-2	chr3	51293721	51293921	+	561.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023502, intron 4 of 9)	RLTR20A4|LTR|ERVK	-16307.0	NM_001291062	69257.0	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-10744326-4	chr10	10744258	10744458	+	995.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114333, intron 5 of 9)	intron (NM_001114333, intron 5 of 9)	-6688.0	NR_046010	78056.0	Mm.271285	NR_046010	ENSMUSG00000112730	4930567K20Rik	1700038H22Rik	RIKEN cDNA 4930567K20 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141215768-4	chr7	141215657	141215857	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025886)	promoter-TSS (NM_025886)	-103.0	NM_025886	66985.0	Mm.21202	NM_025886	ENSMUSG00000038618	Rassf7	2400009B11Rik|AW210608	Ras association (RalGDS/AF-6) domain family (N-terminal) member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-42006273-2	chr19	42006173	42006373	+	760.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145500, intron 1 of 2)	intron (NM_145500, intron 1 of 2)	24510.0	NM_145500	226122.0	Mm.22948	NM_145500	ENSMUSG00000025171	Ubtd1	BC016129	ubiquitin domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-142458487-2	chr5	142458387	142458587	+	898.166626	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_199068, exon 9 of 9)	3' UTR (NM_199068, exon 9 of 9)	-5444.0	NM_172725	231855.0	Mm.78250	NM_172725	ENSMUSG00000039623	Ap5z1	C330006K01Rik	adaptor-related protein complex 5, zeta 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-89050770-4	chr6	89050664	89050864	+	921.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	C-rich|Low_complexity|Low_complexity	-45346.0	NR_134978	232217.0	Mm.281744	NM_175017	ENSMUSG00000055403	4933427D06Rik	-	RIKEN cDNA 4933427D06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-157013195-4	chr1	157013127	157013327	+	908.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73601.0	NM_001357391	78255.0	Mm.28376	NM_023884	ENSMUSG00000026594	Ralgps2	1810020P17Rik|2210408F11Rik|4921528G01Rik|9130014M22Rik|AU043409|AW046161	Ral GEF with PH domain and SH3 binding motif 2	protein-coding	2.09585570785946	4.35533777503833	3.24923485131491	3.88263115776482	3.58978421734248	4.43668941799285	3.74214131356539	4.40516889288176	0.653159662361144	0.267572750638019	0.7702346118414
Merged-chr1-162568609-2	chr1	162568509	162568709	+	800.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR73|LTR|ERV1	-1906.0	NM_001356527	53330.0	Mm.10699	NM_016796	ENSMUSG00000026696	Vamp4	D1Ertd147e|Vamp-4	vesicle-associated membrane protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-41450353-4	chr10	41450290	41450490	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153398)	promoter-TSS (NM_153398)	32.0	NR_102360	268294.0	Mm.258475	NM_153398	ENSMUSG00000019826	Zbtb24	BC055367|Bif1|Bsg1|ZNF450	zinc finger and BTB domain containing 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-127323155-4	chr2	127323057	127323257	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13002.0	NM_010090	13537.0	Mm.4729	NM_010090	ENSMUSG00000027368	Dusp2	PAC1	dual specificity phosphatase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-11999211-4	chr4	11999113	11999313	+	746.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	32639.0	NR_040577	100503636.0	Mm.209078	NR_040577		1700123M08Rik	1600025K15Rik	RIKEN cDNA 1700123M08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-86020474-1	chr13	86020374	86020574	+	664.333313	f0_balb.idr	Intergenic	Lx|LINE|L1	26321.0	NM_007749	12867.0	Mm.378898	NM_007749	ENSMUSG00000017778	Cox7c	COXVIIc|Cox7c1	cytochrome c oxidase subunit VIIc	protein-coding	2.29508052738064	1.65978607915076	3.19941333357193	2.99457970047782	3.13820666588975	3.86426357049871	3.80459818423038	4.93651177630075	2.17614879820679	0.00117812212216574	0.0221091385115922
Merged-chr7-73428114-2	chr7	73428014	73428214	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001081345, exon 39 of 39)	3' UTR (NM_001081345, exon 39 of 39)	-52340.0	NR_040324	319783.0	Mm.349813	NR_040324	ENSMUSG00000097756	A730056A06Rik	C76391	RIKEN cDNA A730056A06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-113919346-2	chr13	113919246	113919446	+	687.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_172595, intron 1 of 4)	intron (NM_172595, intron 1 of 4)	124838.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-89379351-2	chr13	89379251	89379451	+	569.166626	f0_c57.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	-161285.0	NM_013500	12950.0	Mm.266790	NM_013500	ENSMUSG00000021613	Hapln1	BB099155|CLP|Crtl1|Crtl1l|LP|LP-1	hyaluronan and proteoglycan link protein 1	protein-coding	0.526929178745023	0.236844815786305	0.227577655125595	1.2953671797206	1.13066348996517	0.238915646097265	0.229633106926991	0.221605792128061	-0.607385576950556	0.760601657015717	1
Merged-chr14-57910707-4	chr14	57910612	57910812	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20376.0	NM_001360097	75965.0	Mm.29044	NM_029492	ENSMUSG00000021969	Zdhhc20	4930542A17Rik|5033406L14Rik|AI448102|B230110O18Rik|HK11	zinc finger, DHHC domain containing 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-14893923-4	chr3	14893818	14894018	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357334, intron 3 of 7)	intron (NM_001357334, intron 3 of 7)	7630.0	NM_009801	12349.0	Mm.1186	NM_009801	ENSMUSG00000027562	Car2	AI131712|CAII|Ca2|Car-2|Ltw-5|Lvtw-5	carbonic anhydrase 2	protein-coding	-0.179609302407509	-0.00527508853338595	-0.172977838818434	-0.175491136241158	0.144902798144027	-0.00117812449602611	-0.0194314485432636	0.190940539038212	2.68719121786732	0.211553879337073	1
Merged-chr5-140701914-2	chr5	140701814	140702014	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347517, intron 1 of 22)	CpG	464.0	NM_028833	74239.0	Mm.179704	NM_028833	ENSMUSG00000036555	Iqce	1700028P05Rik|mKIAA1023	IQ motif containing E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-82752991-2	chr18	82752891	82753091	+	988.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6048.0	NR_045389	76961.0	Mm.396392	NR_045389	ENSMUSG00000101773	2210420H20Rik	-	RIKEN cDNA 2210420H20 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-117272196-3	chr2	117272094	117272294	+	730.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_026620)	TTS (NM_026620)	22455.0	NM_026620	68215.0	Mm.219389	NM_026620	ENSMUSG00000027349	Fam98b	2610510H03Rik	family with sequence similarity 98, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-43561246-4	chr13	43561153	43561353	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-1062.0	NM_001081059	76137.0	Mm.426290	NM_001081059	ENSMUSG00000021371	Mcur1	6230416A05Rik|AU015498|AV136929|AW554392|C88263|Ccdc90a	mitochondrial calcium uniporter regulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-29111494-3	chr17	29111393	29111593	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17724.0	NM_007669	12575.0	Mm.195663	NM_007669	ENSMUSG00000023067	Cdkn1a	CAP20|CDKI|CIP1|Cdkn1|P21|SDI1|Waf1|mda6|p21Cip1|p21WAF	cyclin-dependent kinase inhibitor 1A (P21)	protein-coding	2.8558937561119	2.0007784956825	2.16423229288462	2.78538071576015	4.45458666122065	3.68682466554114	3.9912748508863	5.10928124926216	2.85349457301748	2.48383889442049e-06	0.000139692651821517
Merged-chr12-102419067-5	chr12	102418894	102419094	+	807.266663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011175, intron 2 of 13)	RLTR25B|LTR|ERVK	20819.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-64488413-2	chr18	64488313	64488513	+	972.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007998, intron 1 of 10)	intron (NM_007998, intron 1 of 10)	685.0	NM_007998	14151.0	Mm.1070	NM_007998	ENSMUSG00000024588	Fech	AI894116|Fcl|fch	ferrochelatase	protein-coding	-0.481746432328506	-0.469214554318062	-0.473318280703541	-0.476485699865405	0.00981266690146199	-0.468289768798417	0.220978125795521	-0.475932277543194	3.5835758682466	0.180252994656414	1
Merged-chr9-21921056-2	chr9	21920956	21921156	+	705.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001253870)	TTS (NM_001253870)	-2873.0	NM_001324531	19340.0	Mm.260157	NM_031874	ENSMUSG00000019066	Rab3d	C130057E11Rik	RAB3D, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-6230504-1	chr6	6230404	6230604	+	831.5	f0_balb.idr	Intergenic	Intergenic	-13331.0	NM_001177572	50799.0	Mm.24513	NM_015829	ENSMUSG00000015112	Slc25a13	AI785475|Ctrn	solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-27238275-2	chr3	27238175	27238375	+	701.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 3 of 4)	intron (NM_178772, intron 3 of 4)	55271.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-66618432-2	chr5	66618332	66618532	+	605.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310626, intron 1 of 15)	CpG	385.0	NM_009686	11787.0	Mm.5159	NM_009686	ENSMUSG00000029207	Apbb2	2310007D03Rik|FE65L1|Rirl1|TR2L|Zfra	amyloid beta (A4) precursor protein-binding, family B, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-3355058-3	chr6	3354965	3355165	+	885.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	44506.0	NM_010156	209086.0	Mm.196013	NM_010156	ENSMUSG00000047735	Samd9l	AA175286|ESTM25|mKIAA2005	sterile alpha motif domain containing 9-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-36674600-4	chr16	36674493	36674693	+	959.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8516.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-89137631-7	chr4	89137472	89137672	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024433, intron 1 of 7)	CpG	202.0	NM_024433	66902.0	Mm.28500	NM_024433	ENSMUSG00000062937	Mtap	1300019I21Rik|MSAP	methylthioadenosine phosphorylase	protein-coding	2.10648306198992	2.14879149515073	1.80001756796399	2.31603826097445	1.35196344112024	1.48547426280512	2.64556804776792	1.40682980837025	-0.596477119207459	0.560334342986652	0.960321604678676
Merged-chr12-85620105-2	chr12	85620005	85620205	+	629.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205053, intron 2 of 3)	intron (NM_001205053, intron 2 of 3)	20087.0	NM_001205053	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-6696455-3	chr2	6696337	6696537	+	658.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110232, intron 4 of 15)	Lx8b|LINE|L1	25225.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-29499425-3	chr17	29499342	29499542	+	727.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8397.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-108300481-2	chr4	108300381	108300581	+	870.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033634, intron 1 of 13)	intron (NM_001033634, intron 1 of 13)	609.0	NM_001033634	414872.0	Mm.426241	NM_001033634	ENSMUSG00000034636	Zyg11b	1110046I03Rik|2810482G21Rik|D4Mgi23|Gm431|mKIAA1730	zyg-ll family member B, cell cycle regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81413564-2	chr10	81413464	81413664	+	731.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_026756, intron 2 of 8)	intron (NM_026756, intron 2 of 8)	2733.0	NR_106141	102465778.0		NR_106141	ENSMUSG00000105379	Mir1191b	mmu-mir-1191b	microRNA 1191b	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167252711-2	chr2	167252611	167252811	+	918.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12174.0	NM_008968	19223.0	Mm.2339	NM_008968	ENSMUSG00000017969	Ptgis	Cyp8|Cyp8a1|Pgis	prostaglandin I2 (prostacyclin) synthase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-3507864-4	chr18	3507800	3508000	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026505)	promoter-TSS (NM_026505)	-57.0	NM_026505	68010.0	Mm.284863	NM_026505	ENSMUSG00000024232	Bambi	2610003H06Rik	BMP and activin membrane-bound inhibitor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-19558388-3	chr10	19558284	19558484	+	657.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33565.0	NM_010511	15979.0	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	2.67120922445631	2.31428238843522	1.52837745170131	3.00641218945235	3.2889110618466	3.39372760414236	2.41980499821972	3.56344377239021	1.32856315501729	0.078995689718561	0.427632315906906
Merged-chr4-40144683-3	chr4	40144587	40144787	+	848.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007386, intron 1 of 20)	intron (NM_007386, intron 1 of 20)	1422.0	NM_007386	11428.0	Mm.331547	NM_007386	ENSMUSG00000028405	Aco1	Aco-1|Irebp|Irp1	aconitase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150065157-2	chr4	150065057	150065257	+	732.599976	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-3297.0	NR_029751	723848.0		NR_029751	ENSMUSG00000065493	Mir34a	Mirn34a|mir-34a|mmu-mir-34a	microRNA 34a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-24515059-4	chr6	24514914	24515114	+	900.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172535)	promoter-TSS (NM_172535)	53.0	NM_172535	214704.0	Mm.61131	NM_172535	ENSMUSG00000046192	Iqub	4932408B21Rik|Trs4	IQ motif and ubiquitin domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-121391490-2	chr7	121391390	121391590	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081327)	promoter-TSS (NM_001081327)	-806.0	NM_001081327	195646.0	Mm.247449	NM_177575	ENSMUSG00000046321	Hs3st2	6430516N12Rik|A830061E14Rik|AW491345	heparan sulfate (glucosamine) 3-O-sulfotransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-164841552-2	chr2	164841452	164841652	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_008906)	TTS (NM_008906)	7779.0	NM_008906	19025.0	Mm.359633	NM_008906	ENSMUSG00000017760	Ctsa	AU019505|PPCA|Ppgb	cathepsin A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-24641512-2	chr16	24641412	24641612	+	569.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 5 of 12)	intron (NM_178665, intron 5 of 12)	-80343.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-50170806-2	chr17	50170706	50170906	+	719.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_181397, intron 1 of 9)	intron (NM_181397, intron 1 of 9)	19691.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-41417788-3	chr12	41417706	41417906	+	973.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053122, intron 4 of 6)	intron (NM_053122, intron 4 of 6)	68251.0	NM_001271708	16981.0	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-17518686-4	chr10	17518591	17518791	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-204537.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53250525-4	chr4	53250414	53250614	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040665, intron 2 of 2)	MTEa|LTR|ERVL-MaLR	4318.0	NR_040665	78180.0	Mm.243847	NR_040665	ENSMUSG00000086947	4930522O17Rik	-	RIKEN cDNA 4930522O17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-95799342-1	chr15	95799242	95799442	+	646.0	f0_balb.idr	intron (NM_175344, intron 1 of 19)	intron (NM_175344, intron 1 of 19)	8499.0	NM_001253813	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-118481598-4	chr7	118481476	118481676	+	957.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10399.0	NM_001033380	319622.0	Mm.323386	NM_001033380	ENSMUSG00000095115	Itpripl2	C130081G24|E030018N11Rik	inositol 1,4,5-triphosphate receptor interacting protein-like 2	protein-coding	3.61565608982143	3.65104945278771	4.0867241730414	3.36002561197888	1.92810372748502	1.40151711712274	1.34173749011413	1.59111455855513	-4.36549597759666	1.84952962358864e-06	0.000108777727567728
Merged-chr10-86705621-4	chr10	86705532	86705732	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011631)	promoter-TSS (NM_011631)	-179.0	NM_001003910	103220.0	Mm.440762	NM_153595	ENSMUSG00000044937	Ttc41	AI449705|AU041509|Gnn	tetratricopeptide repeat domain 41	protein-coding	7.32375697052836	7.64869271613048	7.69756049639296	7.59882329894225	7.37122815815591	7.58897104870965	7.62580800979047	7.57859646795619	-0.0296541454392615	0.841206720906295	0.998431161219273
Merged-chr15-101229282-2	chr15	101229182	101229382	+	951.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019518, intron 4 of 7)	intron (NM_019518, intron 4 of 7)	-4096.0	NR_045328	380977.0	Mm.399924	NR_045326	ENSMUSG00000097915	A330009N23Rik	-	RIKEN cDNA A330009N23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-89179584-4	chr9	89179482	89179682	+	964.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19691.0	NM_007534	12045.0	Mm.479217	NM_007534	ENSMUSG00000089929	Bcl2a1b	A1-b	B cell leukemia/lymphoma 2 related protein A1b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-115745426-1	chr3	115745326	115745526	+	624.0	f1_c57bl6.idr	Intergenic	Intergenic	-30371.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	1.75910464687348	2.00375335392151	2.35835739634092	1.63716913309886	0.908870302548207	1.23387943525849	0.954779048198504	1.35032870298583	-3.14514674593566	0.0137064684121386	0.136284702769756
Merged-chr8-71361478-1	chr8	71361378	71361578	+	622.0	f1_c57bl6.idr	TTS (NM_001142323)	TTS (NM_001142323)	-5370.0	NM_001145780	67023.0	Mm.41890	NM_025917	ENSMUSG00000002395	Use1	2010315L10Rik|5730403H22Rik|AV002165|D12|Ed2|Q-snare|p31	unconventional SNARE in the ER 1 homolog (S. cerevisiae)	protein-coding	1.07541133138367	0.595278629683341	1.39351790078564	1.14903352297555	0.567525577738053	0.807615430945574	0.587777786054707	1.15659523169192	-1.39069096074809	0.385072252557563	0.876154616828737
Merged-chr10-44274665-2	chr10	44274565	44274765	+	954.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358596, intron 1 of 6)	B1F|SINE|Alu	6326.0	NM_001358596	11793.0	Mm.22264	NM_053069	ENSMUSG00000038160	Atg5	2010107M05Rik|3110067M24Rik|AW319544|Apg5l|Atg5l|C88337|Paddy	autophagy related 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-110101319-4	chr5	110101242	110101442	+	725.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001281812, intron 2 of 6)	CpG	783.0	NM_001281812	403178.0	Mm.297057	NM_207279	ENSMUSG00000064247	Plcxd1	A330045H12Rik|Gm576	phosphatidylinositol-specific phospholipase C, X domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120608547-2	chr8	120608447	120608647	+	658.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_197988)	TTS (NM_197988)	-19472.0	NM_178856	272551.0	Mm.275910	NM_178856	ENSMUSG00000031821	Gins2	2210013I18Rik|4833427B12Rik|AI323585|Pfs2	GINS complex subunit 2 (Psf2 homolog)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21170511-2	chr9	21170411	21170611	+	691.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_183408, intron 1 of 14)	B1_Mus2|SINE|Alu	4797.0	NM_183408	18577.0	Mm.191749	NM_019798	ENSMUSG00000032177	Pde4a	D9Ertd60e|Dpde2	phosphodiesterase 4A, cAMP specific	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-4513854-2	chr7	4513754	4513954	+	609.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360154, intron 3 of 12)	intron (NM_001360154, intron 3 of 12)	2121.0	NM_001277903	21955.0	Mm.358643	NM_011618	ENSMUSG00000064179	Tnnt1	AW146156|Tnt|sTnT|ssTnT	troponin T1, skeletal, slow	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-156201805-2	chr4	156201705	156201905	+	613.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015783)	promoter-TSS (NM_015783)	-987.0	NM_015783	100038882.0	Mm.4950	NM_015783	ENSMUSG00000035692	Isg15	G1p2|IGI15|IP17|Irfp|UCRP	ISG15 ubiquitin-like modifier	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-139235729-3	chr4	139235637	139235837	+	984.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	41626.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	3.78427942888329	3.35702180420114	4.47662475429574	3.92142468962005	4.31675160750268	3.61245965874299	4.97507097771073	4.33447722648457	0.600082220185377	0.206477810536561	0.694316359534097
Merged-chr5-146730524-2	chr5	146730424	146730624	+	597.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	64432.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	0.642148288050961	1.01234736367146	0.565451492467795	0.380212732999276	0.649154857192213	1.02380728413698	0.570627619498792	0.381210475142196	0.0400524366083463	0.980703161013654	1
Merged-chr7-75715870-2	chr7	75715770	75715970	+	813.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 17 of 36)	intron (NM_029332, intron 17 of 36)	-132468.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-100449667-4	chr13	100449558	100449758	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008670, intron 1 of 15)	Lx8|LINE|L1	3206.0	NM_008670	17940.0	Mm.6898	NM_008670	ENSMUSG00000021640	Naip1	AV364616|Birc1a|D13Lsd1|Naip|Naip-rs1	NLR family, apoptosis inhibitory protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-40774863-3	chr4	40774763	40774963	+	922.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16978.0	NM_021535	74255.0	Mm.289929	NM_021535	ENSMUSG00000028409	Smu1	2600001O03Rik|2610203K23Rik|AB044414|AI845086|AW556129|Bwd	smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-45219993-4	chr2	45219886	45220086	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-102544.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-3879888-3	chr11	3879714	3879914	+	742.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	15312.0	NM_026150	67430.0	Mm.347950	NM_026150	ENSMUSG00000020434	4921536K21Rik	AV043724	RIKEN cDNA 4921536K21 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-70457221-4	chr12	70457103	70457303	+	998.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028339, intron 3 of 7)	intron (NM_028339, intron 3 of 7)	4049.0	NM_028339	72736.0	Mm.204670	NM_028339	ENSMUSG00000021072	Tmx1	2810425A04Rik|AI465319|Txndc1	thioredoxin-related transmembrane protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-57360948-4	chr19	57360822	57361022	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040316)	promoter-TSS (NR_040316)	-23.0	NR_040316	320879.0	Mm.375089	NR_040316	ENSMUSG00000097785	B230217O12Rik	-	RIKEN cDNA B230217O12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70502357-2	chr8	70502257	70502457	+	770.599976	f1_balb.idr|f1_c57bl6.idr	intron (NM_018827, intron 6 of 8)	intron (NM_018827, intron 6 of 8)	4069.0	NR_151646	66462.0	Mm.28242	NM_025577	ENSMUSG00000058833	Rex1bd	2810428I15Rik	required for excision 1-B domain containing	protein-coding	-1.05877568042897	-1.03501312238488	-1.04817210678232	-1.05426068996071	-1.05810152525527	-1.03216151557194	-0.188696606725984	-1.05378786495764	3.16074139804981	0.330468818528456	1
Merged-chr11-106770443-3	chr11	106770380	106770580	+	946.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_148431, intron 7 of 7)	B3|SINE|B2	8986.0	NM_001353435	50776.0	Mm.859	NM_015810	ENSMUSG00000020718	Polg2	mtPolB|p55|polG-beta	polymerase (DNA directed), gamma 2, accessory subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-56050098-4	chr7	56049982	56050182	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010418)	promoter-TSS (NM_010418)	-73.0	NM_010418	15204.0	Mm.20929	NM_010418	ENSMUSG00000030451	Herc2	D15F32S1h|D7H15F32S1|D7H15F37S1|jdf2|mKIAA0393|rjs	HECT and RLD domain containing E3 ubiquitin protein ligase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-127440734-4	chr8	127440639	127440839	+	891.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033620, intron 20 of 24)	intron (NM_033620, intron 20 of 24)	141087.0	NM_001013580	93742.0	Mm.299254	NM_033620	ENSMUSG00000025812	Pard3	AA960621|AI256638|Asip|D8Ertd580e|Par-3|Par3|Pard-3|Pard3a|Phip	par-3 family cell polarity regulator	protein-coding	3.19301807404951	3.58052016216931	3.64329314419404	3.22924021727063	1.34220312660541	1.52350149493614	2.53737544953465	2.704909962751	-2.32217493335708	0.00301434171777997	0.045472848193534
Merged-chr1-154258780-4	chr1	154258674	154258874	+	932.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_108050, intron 1 of 2)	intron (NR_108050, intron 1 of 2)	-1868.0	NR_040629	78112.0	Mm.401935	NR_040629	ENSMUSG00000099933	4930452N14Rik	-	RIKEN cDNA 4930452N14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139795500-2	chr5	139795400	139795600	+	716.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010757, intron 1 of 2)	intron (NM_010757, intron 1 of 2)	3964.0	NM_010757	17135.0	Mm.157313	NM_010757	ENSMUSG00000018143	Mafk	AW061068|NF-E2|Nfe2u	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein K (avian)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-106935663-4	chr8	106935546	106935746	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009229)	promoter-TSS (NM_009229)	-104.0	NM_009229	20650.0	Mm.30228	NM_009229	ENSMUSG00000041308	Sntb2	Snt2	syntrophin, basic 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-122159426-4	chr7	122159398	122159598	+	970.0285640000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011121)	promoter-TSS (NM_011121)	63.0	NM_011121	18817.0	Mm.16525	NM_011121	ENSMUSG00000030867	Plk1	Plk|STPK13	polo like kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-80109135-4	chr12	80109039	80109239	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007564, exon 2 of 2)	3' UTR (NM_007564, exon 2 of 2)	3874.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-102257748-3	chr15	102257681	102257881	+	685.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011244)	promoter-TSS (NM_011244)	-259.0	NM_011244	19411.0	Mm.1273	NM_011244	ENSMUSG00000001288	Rarg	Nr1b3|RAR-gamma|RARD|RARgamma2	retinoic acid receptor, gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-104474643-4	chr14	104474563	104474763	+	894.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6664.0	NM_011143	18996.0	Mm.246550	NM_011143	ENSMUSG00000048349	Pou4f1	Brn-3|Brn-3.0|Brn3|Brn3.0|Brn3a|E130119J07Rik	POU domain, class 4, transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-97737830-3	chr3	97737736	97737936	+	979.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039376, intron 24 of 46)	intron (NM_001039376, intron 24 of 46)	30178.0	NM_178080	83679.0	Mm.129840	NM_031401	ENSMUSG00000038170	Pde4dip	4732458A06Rik|9430063L05Rik|C87016|D130016K21Rik|D3Bwg1078e|Usmg4|mKIAA0454	phosphodiesterase 4D interacting protein (myomegalin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-91084049-2	chr10	91083952	91084152	+	577.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026166, intron 1 of 2)	B1_Mur4|SINE|Alu	1013.0	NM_026166	67454.0	Mm.252843	NM_026166	ENSMUSG00000019975	Ikbip	1200009F10Rik|1700023M03Rik|D18354|Ikip	IKBKB interacting protein	protein-coding	-0.452953595349834	-0.440154391959103	-0.444345192769225	-0.447580118700422	-0.173732572367751	0.306189612086096	-0.258171219006794	-0.447014881753238	3.59644741318233	0.144664868647008	1
Merged-chr18-38000057-2	chr18	37999957	38000157	+	559.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1088.0	NM_001205336	106952.0	Mm.247642	NM_139206	ENSMUSG00000024451	Arap3	Centd3|Drag1|E030006K04Rik|cnt-d3	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-88813090-4	chr6	88812990	88813190	+	999.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166249, intron 5 of 7)	intron (NM_001166249, intron 5 of 7)	28845.0	NM_001362152	80283.0	Mm.166858	NM_030251	ENSMUSG00000030083	Abtb1	AI847549|BC003234|BPOZ|EF1ABP	ankyrin repeat and BTB (POZ) domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-102493514-3	chr4	102493400	102493600	+	883.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177983, intron 2 of 5)	intron (NM_001177983, intron 2 of 5)	-76560.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-12939824-2	chr18	12939724	12939924	+	576.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_207530, intron 1 of 27)	B4|SINE|B4	2017.0	NM_207530	64291.0	Mm.259470	NM_020573	ENSMUSG00000044252	Osbpl1a	G430090F17Rik|Gm753|ORP-1|Osbpl1b	oxysterol binding protein-like 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-6341666-4	chr15	6341584	6341784	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001008702, intron 1 of 13)	intron (NM_001008702, intron 1 of 13)	41895.0	NM_001008702	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5512380-4	chr19	5512265	5512465	+	982.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1848.0	NM_001024560	225861.0	Mm.20071	NM_001024560	ENSMUSG00000056185	Snx32	B930037P14Rik|Snx6b	sorting nexin 32	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96564830-4	chr3	96564705	96564905	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040409, intron 1 of 3)	intron (NR_040409, intron 1 of 3)	1996.0	NR_040409	100038464.0	Mm.475126	NR_040409	ENSMUSG00000074398	Gm15441	-	predicted gene 15441	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-108566750-4	chr6	108566646	108566846	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56421.0	NR_040757	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	1.26964703681483	1.21862067128641	2.18644421592879	0.891639025629636	2.17061233571785	2.63088061445204	1.18561154675844	0.895346059853667	1.09849901002248	0.379605367503723	0.871899780487614
Merged-chr17-57231726-4	chr17	57231626	57231826	+	943.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3590.0	NM_009778	12266.0	Mm.19131	NM_009778	ENSMUSG00000024164	C3	AI255234|ASP|HSE-MSF|Plp	complement component 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-35827082-4	chr12	35826991	35827191	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-98530.0	NM_207531	403205.0	Mm.190508	NM_207531	ENSMUSG00000036231	Agr3	BCMP11|E030025L21Rik|Gm888	anterior gradient 3	protein-coding	4.48890855624403	4.72507393823228	4.92704933318521	4.37427375059936	3.46876611881981	2.94879562053092	4.00504501550001	4.19198749183176	-1.19080181542755	0.00756647020107188	0.0894115326386676
Merged-chr1-191094517-1	chr1	191094417	191094617	+	1000.0	f1_c57bl6.idr	Intergenic	B4|SINE|B4	-3897.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-160615225-2	chr2	160615125	160615325	+	688.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30672.0	NM_009408	21969.0	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115718709-2	chr11	115718609	115718809	+	635.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-10112.0	NM_008163	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-75720218-3	chr12	75720114	75720314	+	940.5277710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030750, intron 2 of 2)	B1_Mur1|SINE|Alu	15515.0	NM_030750	81535.0	Mm.280199	NM_030750	ENSMUSG00000021054	Sgpp1	AI463453|SPP|SPP1|Spph1	sphingosine-1-phosphate phosphatase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-10840743-1	chr8	10840643	10840843	+	1000.0	f0_balb.idr	Intergenic	Intergenic	41711.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-105238462-1	chr10	105238362	105238562	+	758.0	f1_balb.idr	intron (NM_177368, intron 11 of 11)	LSU-rRNA_Hsa|rRNA|rRNA	336017.0	NM_177368	278279.0	Mm.25225	NM_177368	ENSMUSG00000036019	Tmtc2	8430438D04Rik|D330034A10Rik	transmembrane and tetratricopeptide repeat containing 2	protein-coding	0.429689153177069	0.482315547222446	0.465695883513086	0.452476932787033	2.0848905791632	1.31956894976452	0.469409754542764	1.43591789241411	5.09037331088602	0.00252588560280853	0.0398757571874956
Merged-chr5-113942788-2	chr5	113942637	113942837	+	877.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_198109, exon 15 of 15)	exon (NM_198109, exon 15 of 15)	-34031.0	NM_011779	23790.0	Mm.260158	NM_011779	ENSMUSG00000004530	Coro1c	AL022675|AW455561|AW548837	coronin, actin binding protein 1C	protein-coding	3.59353152414101	3.34511817349722	1.42341420938328	2.06861306274131	2.26477215752097	2.93121253545015	2.83012354343168	2.0801846591486	-0.605138931405997	0.485693622062047	0.932316512405969
Merged-chr6-52698169-4	chr6	52698084	52698284	+	938.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15545.0	NM_025816	52440.0	Mm.389757	NM_025816	ENSMUSG00000004535	Tax1bp1	1200003J11Rik|1700069J21Rik|AA930106|D6Ertd404e|D6Ertd772e|T6bp|TXBP151	Tax1 (human T cell leukemia virus type I) binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-95851816-4	chr15	95851706	95851906	+	997.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253813, intron 2 of 20)	intron (NM_001253813, intron 2 of 20)	-21734.0	NR_155276	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34366703-2	chr17	34366611	34366811	+	890.333374	f0_c57.idr|f1_c57bl6.idr	intron (NM_079835, intron 8 of 8)	intron (NM_079835, intron 8 of 8)	-10421.0	NM_001111094	100038862.0	Mm.440426	NM_201405	ENSMUSG00000062638	Btnl1	Btnl3|Gm316|Gm33	butyrophilin-like 1	protein-coding	4.81000879984662	4.62850179602592	5.00518214372792	4.17411060213248	3.83282786049542	3.32747098805046	2.58512134906879	3.09393182052741	-1.88761273023529	9.00343464464251e-05	0.00287295768261758
Merged-chr9-57467583-2	chr9	57467483	57467683	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301635, intron 1 of 5)	intron (NM_001301635, intron 1 of 5)	477.0	NM_001301634	56807.0	Mm.102278	NM_020270	ENSMUSG00000040722	Scamp5	Sc5	secretory carrier membrane protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-150598354-4	chr5	150598196	150598396	+	979.464294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1|SINE|Alu	-3771.0	NM_133898	100637.0	Mm.279932	NM_133898	ENSMUSG00000041132	N4bp2l1	2410024N18Rik|AI428195|B230342M21Rik	NEDD4 binding protein 2-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-25225762-2	chr5	25225662	25225862	+	644.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_144908, intron 1 of 11)	B3A|SINE|B2	2890.0	NM_144908	231050.0	Mm.246718	NM_144908	ENSMUSG00000038072	Galnt11	A430075I06Rik|AI648252|E430002F06Rik	polypeptide N-acetylgalactosaminyltransferase 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-121400346-4	chr5	121400255	121400455	+	995.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172722, intron 1 of 23)	intron (NM_172722, intron 1 of 23)	2373.0	NM_172722	231713.0	Mm.33919	NM_172722	ENSMUSG00000042719	Naa25	4833422K13Rik|A630046C11|AI450868|C330023M02Rik|Mdm20	N(alpha)-acetyltransferase 25, NatB auxiliary subunit	protein-coding	3.89758089453513	4.09292464704428	3.3528537920303	4.09842486939682	4.17919046959563	4.63614809692733	4.05736286602714	4.27708786299314	0.55391568842151	0.206629068631569	0.694565436713175
Merged-chr15-34054946-3	chr15	34054852	34055052	+	725.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4_|SINE|ID	-27767.0	NM_001357926	67154.0	Mm.130883	NM_026002	ENSMUSG00000022255	Mtdh	2610103J23Rik|3D3|3D3/Lyric|AEG-1|AV353288|D8Bwg1112e|Lyric	metadherin	protein-coding	1.01522059578151	2.49021978926109	0.839576775001739	1.45971888054408	0.787561486249541	2.43024842771098	0.845426980134826	1.87394962331079	0.112943687718459	0.933159856089278	0.998431161219273
Merged-chr4-117071123-1	chr4	117071023	117071223	+	662.0	f1_c57bl6.idr	3' UTR (NM_175135, exon 10 of 10)	3' UTR (NM_175135, exon 10 of 10)	-24933.0	NM_001312903	19207.0	Mm.287037	NM_008958	ENSMUSG00000028681	Ptch2	ptc2	patched 2	protein-coding	-0.443035279486733	-0.0947609975497525	-0.00334407568592598	-0.438522280501577	-0.442365761702022	-0.0877619218340618	-0.435006990913202	-0.438045694429071	-1.31875199671009	0.61359966133495	1
Merged-chr1-192537371-4	chr1	192537291	192537491	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144881, intron 11 of 11)	ORR1D2|LTR|ERVL-MaLR	233828.0	NM_144881	226861.0	Mm.145857	NM_144881	ENSMUSG00000037375	Hhat	2810432O22Rik|AI462858|AP-2CRE|Skn|Tg(TFAP2A-cre)1Will	hedgehog acyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-44312119-2	chr19	44312019	44312219	+	818.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8948.0	NR_039574	100628619.0		NR_039574	ENSMUSG00000093315	Mir5114	mmu-mir-5114|mu-mir-5114	microRNA 5114	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117930094-3	chr10	117929970	117930170	+	663.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045342, intron 2 of 3)	MLT1L|LTR|ERVL-MaLR	4611.0	NR_045342	71067.0	Mm.410793	NR_045342	ENSMUSG00000112500	4933411E08Rik	-	RIKEN cDNA 4933411E08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-52141851-4	chr14	52141763	52141963	+	912.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023879, intron 14 of 24)	intron (NM_023879, intron 14 of 24)	30960.0	NM_023879	77945.0	Mm.21662	NM_023879	ENSMUSG00000057132	Rpgrip1	0610005A07Rik|4930401L23Rik|4930505G06Rik|A930002K18Rik|AA415034|nmf247	retinitis pigmentosa GTPase regulator interacting protein 1	protein-coding	3.37364594297668	4.00795795809292	3.48600476433097	3.96018058559548	4.096609314622	3.96513238860237	3.97456995759694	3.49245591268173	0.245753598632864	0.610714854210474	0.975183586809945
Merged-chr13-24831581-4	chr13	24831487	24831687	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019551)	promoter-TSS (NM_019551)	-72.0	NM_019551	56196.0	Mm.427162	NM_019551	ENSMUSG00000035958	Tdp2	D13Ertd656e|Ttrap	tyrosyl-DNA phosphodiesterase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-119181624-4	chr4	119181502	119181702	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013848, intron 8 of 12)	intron (NM_013848, intron 8 of 12)	-7407.0	NM_001145936	195522.0	Mm.169620	NM_183140	ENSMUSG00000045268	Zfp691	6430544H17Rik|Znf691	zinc finger protein 691	protein-coding	3.62158377165155	3.76666133683561	4.31869741765242	2.73799441180886	3.06067625878056	3.22020653373183	3.59361995051341	3.76548702258013	-0.428701100161156	0.452920226354918	0.918756234638126
Merged-chr5-45499840-2	chr5	45499740	45499940	+	615.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_024434, intron 5 of 12)	intron (NM_024434, intron 5 of 12)	6466.0	NM_024434	66988.0	Mm.286830	NM_024434	ENSMUSG00000039682	Lap3	2410015L10Rik|AA410100|LAP-3|Lap|Lapep|Pep-7|Pep-S|Pep7|Peps	leucine aminopeptidase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-67933768-3	chr14	67933658	67933858	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177780)	promoter-TSS (NM_177780)	-186.0	NM_177780	68813.0	Mm.258155	NM_177780	ENSMUSG00000044447	Dock5	1110060D06Rik|AI666732|AI956923|BC016533|E130320D18|lr2|rlc	dedicator of cytokinesis 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-77460928-6	chr11	77460911	77461111	+	883.805542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001291190)	TTS (NM_001291190)	-2902.0	NM_139129	216961.0	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-8482337-2	chr12	8482237	8482437	+	614.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17672.0	NM_007483	11852.0	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-63815301-4	chr13	63815226	63815426	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023507)	promoter-TSS (NM_023507)	86.0	NM_023507	76251.0	Mm.186610	NM_023507	ENSMUSG00000021470	Ercc6l2	0610007P08Rik|1700019D06Rik|9330134C04Rik|Rad26l|Sr278	excision repair cross-complementing rodent repair deficiency, complementation group 6 like 2	protein-coding	7.88856827000317	7.73695272418356	7.9455787993821	7.50186191899639	7.18060349938098	6.93150925005636	7.43656622726675	7.17507052956618	-0.60923528956132	0.000151584050818657	0.00432338853024305
Merged-chr4-114949282-2	chr4	114949182	114949382	+	624.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23269.0	NM_015758	30923.0	Mm.377122	NM_015758	ENSMUSG00000044518	Foxe3	FREAC8|dyl|rct	forkhead box E3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-108880666-4	chr3	108880575	108880775	+	828.549988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177091, intron 4 of 12)	intron (NM_177091, intron 4 of 12)	9333.0	NM_177091	320181.0	Mm.244233	NM_177091	ENSMUSG00000045326	Fndc7	E230011A21Rik	fibronectin type III domain containing 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-74364432-3	chr1	74364315	74364515	+	966.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033345, intron 5 of 9)	intron (NM_001033345, intron 5 of 9)	2307.0	NM_001033345	241112.0	Mm.310460	NM_001033345	ENSMUSG00000073650	Catip	Gm216	ciliogenesis associated TTC17 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-29959213-4	chr13	29959111	29959311	+	819.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010093, intron 1 of 6)	MTC|LTR|ERVL-MaLR	25180.0	NM_001289920	13557.0	Mm.268356	NM_010093	ENSMUSG00000016477	E2f3	E2F3b|E2f3a	E2F transcription factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67124396-3	chr10	67124297	67124497	+	770.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2861.0	NM_207221	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122901333-1	chr5	122901233	122901433	+	644.0	f1_balb.idr	promoter-TSS (NM_013910)	promoter-TSS (NM_013910)	-983.0	NM_013910	30841.0	Mm.86406	NM_013910	ENSMUSG00000029475	Kdm2b	Cxxc2|Fbl10|Fbxl10|Jhdm1b|PCCX2	lysine (K)-specific demethylase 2B	protein-coding	1.70092597749355	0.926848050293346	1.28532599314051	1.50989017701531	1.79315999368056	0.930040163618834	1.29472798392586	1.51808277940453	0.134154607394076	0.917086371791436	0.998431161219273
Merged-chr8-121108401-4	chr8	121108301	121108501	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166482)	promoter-TSS (NM_001166482)	-22.0	NM_001166482	234814.0	Mm.31690	NM_172761	ENSMUSG00000031816	Mthfsd	AW049977|BC052066|C920004D05	methenyltetrahydrofolate synthetase domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-25050284-3	chr16	25050173	25050373	+	658.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9366.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-55434092-4	chr12	55433979	55434179	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35254.0	NM_011968	26443.0	Mm.30210	NM_011968	ENSMUSG00000021024	Psma6	IOTA	proteasome (prosome, macropain) subunit, alpha type 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-63941723-4	chr7	63941618	63941818	+	990.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2803.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	-0.00379948004582992	0.357115640764408	-0.373484057640433	-0.376789000262995	-0.233474879586978	-0.368234266850807	-0.372539225041226	-0.376211651400669	-2.75462896866818	0.266251775084534	1
Merged-chr14-17902230-1	chr14	17902130	17902330	+	1000.0	f0_c57.idr	intron (NM_001113417, intron 2 of 9)	intron (NM_001113417, intron 2 of 9)	-79414.0	NM_009380	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	3.99126296722349	3.32164249219494	3.47035708848669	3.70815294400497	2.39729366363787	3.00395586859348	2.76590514187832	3.39169311367292	-1.16030849817651	0.0505521809800656	0.327805059560914
Merged-chr11-20214987-2	chr11	20214887	20215087	+	788.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_008996, intron 1 of 5)	B3|SINE|B2	13575.0	NM_008996	19324.0	Mm.271944	NM_008996	ENSMUSG00000020149	Rab1a	Gtbp|Rab-1|Rab1|Ypt1|mKIAA3012	RAB1A, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-39923323-4	chr13	39923224	39923424	+	989.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	364687.0	NM_172143	218165.0	Mm.364096	NM_172143	ENSMUSG00000047094	Ofcc1	opo	orofacial cleft 1 candidate 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-66134879-2	chr5	66134779	66134979	+	955.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001127382, intron 2 of 7)	intron (NM_001127382, intron 2 of 7)	16099.0	NM_001291226	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	0.251476338030164	0.769161237855173	0.265381181586457	0.799380288276239	0.252770450788808	0.778936044829776	0.266871189916644	0.696942299543543	-0.170405928897749	0.92986902116918	1
Merged-chr13-20798689-4	chr13	20798598	20798798	+	784.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012054, intron 1 of 20)	intron (NM_012054, intron 1 of 20)	4585.0	NM_012054	27052.0	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	1.92635002874024	2.83193907276571	1.5481443294906	2.57331392976471	2.8641872461591	1.33044813983322	2.24757626567668	1.89382229599816	-0.22224958447962	0.819965616245598	0.998431161219273
Merged-chr5-101934775-2	chr5	101934675	101934875	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 15 of 66)	intron (NM_172882, intron 15 of 66)	135146.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-69713546-4	chr2	69713428	69713628	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177244)	promoter-TSS (NM_177244)	-922.0	NM_177244	320720.0	Mm.289566	NM_177244	ENSMUSG00000027086	Fastkd1	5330408N05Rik|mKIAA1800	FAST kinase domains 1	protein-coding	4.88671680752526	3.98810817330072	4.3687055930284	4.57739719980134	4.65324933527089	3.53916949515548	4.64308412902918	3.40454996137899	-0.395937814182824	0.392844633512586	0.88154923557681
Merged-chr11-114851012-4	chr11	114850901	114851101	+	966.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001110337)	promoter-TSS (NM_001110337)	-531.0	NM_001110337	70355.0	Mm.242413	NM_147217	ENSMUSG00000051043	Gprc5c	1110028I06Rik|3200002M13Rik|Raig3	G protein-coupled receptor, family C, group 5, member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-139214288-2	chr7	139214188	139214388	+	781.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162540)	promoter-TSS (NM_001162540)	-981.0	NM_001162540	57740.0	Mm.65336	NM_021302	ENSMUSG00000015981	Stk32c	PKE|Pkek|YANK3	serine/threonine kinase 32C	protein-coding	-0.289851946104314	-0.737899168765768	-0.740932179010924	-0.743264539078787	-0.280173431323445	-0.737213951634147	-0.740264187498491	-0.742857569821679	0.0418983010157508	0.98887086484455	1
Merged-chr8-84237780-4	chr8	84237649	84237849	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172503)	promoter-TSS (NM_172503)	-707.0	NM_172503	212168.0	Mm.117094	NM_172503	ENSMUSG00000035671	Zswim4	D330002I24|E130119J17Rik	zinc finger SWIM-type containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-67258699-2	chr7	67258599	67258799	+	761.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357324, intron 7 of 11)	RSINE1|SINE|B4	36083.0	NM_001191051	75099.0	Mm.121691	NM_175215	ENSMUSG00000043831	Lysmd4	4930506D23Rik	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135270213-2	chr4	135270113	135270313	+	777.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_013885, intron 1 of 5)	intron (NM_013885, intron 1 of 5)	2547.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117449925-4	chr10	117449843	117450043	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-2508.0	NR_152734	102634600.0	Mm.399106	NR_152734	ENSMUSG00000112344	Gm32141	-	predicted gene, 32141	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-70921939-2	chr6	70921839	70922039	+	718.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3017.0	NM_001355766	74221.0	Mm.273326	NM_028825	ENSMUSG00000051896	Tex37	1700011F03Rik|Tsc21	testis expressed 37	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-85905386-2	chr1	85905286	85905486	+	959.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_022417, exon 3 of 6)	exon (NM_022417, exon 3 of 6)	10876.0	NM_022417	64294.0	Mm.29870	NM_022417	ENSMUSG00000026223	Itm2c	3110038L02Rik|BRI3|Bricd2c|E25|E25C|ITM3	integral membrane protein 2C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-82993166-2	chr15	82993066	82993266	+	841.1666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29972.0	NM_028728	74039.0	Mm.32584	NM_028728	ENSMUSG00000058099	Nfam1	4921501M20Rik|Cnaip	Nfat activating molecule with ITAM motif 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-108634190-3	chr5	108634119	108634319	+	887.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359426, intron 1 of 9)	intron (NM_001359426, intron 1 of 9)	4409.0	NM_001359426	72392.0	Mm.258324	NM_028223	ENSMUSG00000013495	Tmem175	3010001K23Rik|AI504381|mTMEM175	transmembrane protein 175	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-13837875-4	chr10	13837782	13837982	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025446, intron 1 of 5)	intron (NM_025446, intron 1 of 5)	31075.0	NM_025446	66253.0	Mm.45755	NM_025446	ENSMUSG00000019806	Aig1	1500031O19Rik|AV064870|AW413422|CGI-103	androgen-induced 1	protein-coding	5.32296110729242	4.89274348583157	5.26621239823922	5.43585480804227	6.29708145399769	6.35747364457662	5.73596977759815	5.5641181491386	0.878659887044461	0.00191144295364408	0.0322099614576147
Merged-chr4-152362451-2	chr4	152362351	152362551	+	724.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081376, intron 9 of 41)	intron (NM_001081376, intron 9 of 41)	23800.0	NM_001081376	269610.0	Mm.40192	NM_029216	ENSMUSG00000005045	Chd5	4930532L22Rik|AW060752|B230399N07Rik|CHD-5	chromodomain helicase DNA binding protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-36779755-3	chr16	36779654	36779854	+	814.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145899, intron 3 of 6)	intron (NM_001145899, intron 3 of 6)	5208.0	NM_001145899	57738.0	Mm.281804	NM_021301	ENSMUSG00000022899	Slc15a2	8430408C16Rik|C78862|Pept2	solute carrier family 15 (H+/peptide transporter), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-30913243-1	chr13	30913143	30913343	+	561.0	f1_c57bl6.idr	intron (NM_025588, intron 6 of 27)	intron (NM_025588, intron 6 of 27)	34518.0	NM_153072	210554.0	Mm.450571	NM_153072	ENSMUSG00000076430	Hus1b	-	HUS1 checkpoint clamp component B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-21270619-2	chr19	21270519	21270719	+	741.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1659.0	NM_009551	22682.0	Mm.292405	NM_009551	ENSMUSG00000024750	Zfand5	2310057A04Rik|5830475F03Rik|AA415485|Za20d2|Zfp216	zinc finger, AN1-type domain 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-155066832-2	chr1	155066732	155066932	+	638.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_151545, intron 3 of 6)	intron (NR_151545, intron 3 of 6)	16432.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-116226944-2	chr6	116226844	116227044	+	604.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026585, intron 14 of 30)	intron (NM_026585, intron 14 of 30)	18911.0	NM_026585	28006.0	Mm.28524	NM_026585	ENSMUSG00000024104	Washc2	A130095H06|C530005J20Rik|D6Wsu116e|Fam21	WASH complex subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-142006297-2	chr4	142006197	142006397	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177868, intron 1 of 31)	intron (NM_177868, intron 1 of 31)	5354.0	NM_177868	329977.0	Mm.252019	NM_028429	ENSMUSG00000051435	Fhad1	2900090M10Rik|B230311F11	forkhead-associated (FHA) phosphopeptide binding domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30807774-4	chr2	30807667	30807867	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356435)	promoter-TSS (NM_001356435)	-201.0	NM_001356435	66617.0	Mm.33167	NM_170592	ENSMUSG00000026857	Ntmt1	2610205E22Rik|AL033331|AL033332|Mettl11a|NTM1A	N-terminal Xaa-Pro-Lys N-methyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-55850037-2	chr16	55849937	55850137	+	896.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001134457, intron 4 of 5)	intron (NM_001134457, intron 4 of 5)	-11396.0	NM_001159395	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-130003857-2	chr5	130003757	130003957	+	866.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010368)	promoter-TSS (NM_010368)	-808.0	NM_001357027	110006.0	Mm.3317	NM_010368	ENSMUSG00000025534	Gusb	AI747421|Gur|Gus|Gus-r|Gus-s|Gus-t|Gus-u|Gut|asd|g	glucuronidase, beta	protein-coding	0.570523693986095	0.700116054646771	0.393801268713892	0.222118359909058	0.353970317651845	0.709412170860439	0.398488014837395	0.222875400540803	-0.355321024027684	0.841581292873124	1
Merged-chr1-149826349-4	chr1	149826261	149826461	+	961.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13C1|LTR|ERVK	96078.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85536766-2	chr12	85536666	85536866	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62339.0	NM_001205052	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-15704735-4	chr17	15704631	15704831	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007690)	promoter-TSS (NM_007690)	-236.0	NM_007690	12648.0	Mm.8137	NM_007690	ENSMUSG00000023852	Chd1	4930525N21Rik|AI851787|AW555109	chromodomain helicase DNA binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180357908-4	chr1	180357813	180358013	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081175, intron 2 of 7)	intron (NM_001081175, intron 2 of 7)	-27364.0	NR_003623	277333.0	Mm.389223	NM_199472		Gm5069	EG277333	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117792568-7	chr11	117792444	117792644	+	898.3214109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001195088, exon 16 of 16)	exon (NM_001195088, exon 16 of 16)	-5116.0	NM_029964	77727.0	Mm.159981	NM_029964	ENSMUSG00000025573	6030468B19Rik	Il-40	RIKEN cDNA 6030468B19 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-105009881-4	chr12	105009777	105009977	+	897.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172500)	promoter-TSS (NM_172500)	-68.0	NM_172500	212073.0	Mm.212688	NM_172500	ENSMUSG00000054150	Syne3	KASH3|nesprin-3	spectrin repeat containing, nuclear envelope family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129820027-4	chr4	129819913	129820113	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164745)	promoter-TSS (NM_001164745)	-466.0	NM_008974	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	4.97397148565309	4.73665585493185	5.42331845454892	5.34932999281618	5.15206687899323	4.76956793661544	5.40097337954775	5.37249935230814	0.0575246724549638	0.855208148475599	0.998431161219273
Merged-chr6-89256179-3	chr6	89256063	89256263	+	918.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29562.0	NR_131021	75131.0	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	Gm44205	RIKEN cDNA 4930512J16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-8799543-2	chr10	8799443	8799643	+	811.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 4 of 19)	PB1D7|SINE|Alu	86527.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-172196131-2	chr1	172196031	172196231	+	568.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001329869)	TTS (NM_001329869)	10673.0	NM_001329871	18611.0	Mm.544	NM_011063	ENSMUSG00000013698	Pea15a	Mat1|PEA-15|Pea15|Pkcs15	phosphoprotein enriched in astrocytes 15A	protein-coding	0.889439545538978	1.05633302631272	0.404639238301469	0.398225551903237	0.900326194389887	1.06813082460252	0.406466633612049	0.399348444358268	0.0404373567996535	0.982250215873279	1
Merged-chr6-15844665-2	chr6	15844565	15844765	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	124004.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-49523433-2	chr18	49523333	49523533	+	597.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_033785, intron 1 of 1)	L1VL1|LINE|L1	144.0	NR_033785	67321.0	Mm.245802	NR_033785	ENSMUSG00000100297	1700044K03Rik	-	RIKEN cDNA 1700044K03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-13499627-5	chr10	13499541	13499741	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1387.0	NM_001330198	66848.0	Mm.26625	NM_025799	ENSMUSG00000019810	Fuca2	0610025O11Rik|5530401P20Rik	fucosidase, alpha-L- 2, plasma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-108123471-3	chr3	108123369	108123569	+	959.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010306, intron 3 of 8)	intron (NM_010306, intron 3 of 8)	22683.0	NM_010306	14679.0	Mm.271703	NM_010306	ENSMUSG00000000001	Gnai3	AI158965|AW537698|Galphai3|Gnai-3	guanine nucleotide binding protein (G protein), alpha inhibiting 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-142813191-3	chr2	142813086	142813286	+	810.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355123, intron 12 of 26)	intron (NM_001355123, intron 12 of 26)	88278.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-35771204-2	chr16	35771107	35771307	+	705.833374	f1_balb.idr|f1_c57bl6.idr	intron (NR_152314, intron 1 of 8)	RMER17C|LTR|ERVK	821.0	NM_175111	66667.0	Mm.45272	NM_175111	ENSMUSG00000022849	Hspbap1	3830421G21Rik	Hspb associated protein 1	protein-coding	1.86055183759534	0.793660202393206	0.780051527108067	1.38902201352502	0.930174451026273	1.21174334999365	1.16969981523814	1.50701088078894	-0.322735341338451	0.815644708993184	0.998431161219273
Merged-chr6-115015656-4	chr6	115015542	115015742	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026894, intron 5 of 7)	intron (NM_026894, intron 5 of 7)	22232.0	NM_026894	68971.0	Mm.24937	NM_026894	ENSMUSG00000030316	Tamm41	1500001M20Rik|TAM41	TAM41 mitochondrial translocator assembly and maintenance homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-120741074-2	chr14	120740974	120741174	+	727.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-170120.0	NM_023579	70572.0	Mm.221452	NM_023579	ENSMUSG00000030662	Ipo5	1110011C18Rik|5730478E03Rik|AA409333|C76941|IMB3|Kpnb3|Ranbp5|imp5	importin 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165027374-1	chr2	165027274	165027474	+	763.0	f0_balb.idr	intron (NM_144892, intron 1 of 7)	intron (NM_144892, intron 1 of 7)	7405.0	NM_144892	228869.0	Mm.233080	NM_144892	ENSMUSG00000039804	Ncoa5	CIA	nuclear receptor coactivator 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-47471900-1	chr6	47471800	47472000	+	672.0	f0_balb.idr	intron (NM_001355550, intron 1 of 21)	MTEa-int|LTR|ERVL-MaLR	17143.0	NM_001355550	26965.0	Mm.87611	NM_012042	ENSMUSG00000029686	Cul1	Cul-1	cullin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124711306-2	chr6	124711206	124711406	+	648.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007531)	promoter-TSS (NM_007531)	872.0	NM_013536	14791.0	Mm.6390	NM_013536	ENSMUSG00000004268	Emg1	C2f|Grcc2f	EMG1 N1-specific pseudouridine methyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-9883146-2	chr2	9883046	9883246	+	849.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040511, exon 4 of 4)	non-coding (NR_040511, exon 4 of 4)	1900.0	NR_024257	381347.0	Mm.441450	NR_024257		4930412O13Rik	Gm10853	RIKEN cDNA 4930412O13 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-151583691-4	chr1	151583610	151583810	+	878.991699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022018, intron 1 of 13)	intron (NM_022018, intron 1 of 13)	12337.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-53265156-3	chr1	53265033	53265233	+	878.015869	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153556, intron 4 of 12)	intron (NM_153556, intron 4 of 12)	31895.0	NM_153556	227099.0	Mm.60499	NM_153556	ENSMUSG00000026098	Pms1	-	PMS1 homolog 1, mismatch repair system component	protein-coding	1.05031302863963	1.70655817073974	0.756188846287964	0.745385051629047	1.05901845650387	1.72194826405248	1.15073131431187	1.25612062734136	0.70947680296555	0.606152992075006	0.974576632476413
Merged-chr3-8762386-3	chr3	8762287	8762487	+	570.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-95349.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-41347541-2	chr4	41347441	41347641	+	660.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-1455.0	NM_001355509	67123.0	Mm.289795	NM_023305	ENSMUSG00000028437	Ubap1	2700092A01Rik|NAG20|UBAP-1|Ubap	ubiquitin-associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-181853221-2	chr1	181853121	181853321	+	701.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10820.0	NM_133815	98386.0	Mm.4538	NM_133815	ENSMUSG00000004880	Lbr	AI505894|ic	lamin B receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-82699773-4	chr10	82699643	82699843	+	949.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081218, intron 1 of 14)	CpG	736.0	NM_001081218	67933.0	Mm.127405	NM_026462	ENSMUSG00000020246	Hcfc2	1700129L13Rik|AU019838|fkls	host cell factor C2	protein-coding	1.16189363063969	0.681067407723634	0.661791880567192	1.24334128047866	0.623918581311664	0.685320098502787	2.07188603372516	2.13378915624733	2.05665033504335	0.172135022081715	0.640195159361202
Merged-chr10-83301851-3	chr10	83301757	83301957	+	821.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177388, intron 4 of 10)	intron (NM_177388, intron 4 of 10)	35960.0	NM_177388	338365.0	Mm.67073	NM_177388	ENSMUSG00000034591	Slc41a2	A230035L05Rik|SLC41A1-L1	solute carrier family 41, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-105752214-4	chr7	105752117	105752317	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009906)	promoter-TSS (NM_009906)	18.0	NM_009906	12751.0	Mm.20837	NM_009906	ENSMUSG00000030894	Tpp1	Cln2|LPIC|TPP-1|TPP-I	tripeptidyl peptidase I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-136898466-1	chr3	136898366	136898566	+	629.0	f1_balb.idr	intron (NM_008913, intron 8 of 13)	intron (NM_008913, intron 8 of 13)	228400.0	NM_001293622	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	-1.70147049771789	-1.81273664167395	-1.82168966216065	-1.68817205465363	-1.84026411453382	-1.81079648478606	-1.81966289456708	-1.8277275275835	-1.35489344311002	0.70088362784012	1
Merged-chr17-54832555-1	chr17	54832455	54832655	+	547.0	f1_c57bl6.idr	Intergenic	Lx3A|LINE|L1	-462481.0	NR_045825	69418.0	Mm.391004	NR_045825	ENSMUSG00000099747	1700025K24Rik	-	RIKEN cDNA 1700025K24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-136568863-2	chr1	136568763	136568963	+	557.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56038.0	NM_177643	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83482623-4	chr6	83482533	83482733	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149734, intron 4 of 6)	intron (NR_149734, intron 4 of 6)	24336.0	NM_013764	27369.0	Mm.42234	NM_013764	ENSMUSG00000014554	Dguok	dGK|dGK1|dGK2|dGK3	deoxyguanosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-16769662-2	chr9	16769562	16769762	+	588.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	-391431.0	NM_001080814	270120.0	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT atypical cadherin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-104610695-7	chr13	104610583	104610783	+	993.4285890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	206270.0	NM_026072	67285.0	Mm.235398	NM_026072	ENSMUSG00000021715	Cwc27	3110009E13Rik|NY-CO-10|Sdccag10	CWC27 spliceosome-associated protein	protein-coding	1.39717779848724	0.607671796356881	1.1209817797884	0.586642177584529	1.23747458565273	0.610305515095466	1.57192285230876	0.588263837311784	0.404946394494845	0.806942205822005	0.998431161219273
Merged-chr10-12964434-4	chr10	12964284	12964484	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029075)	promoter-TSS (NM_029075)	-125.0	NM_001163591	74732.0	Mm.248648	NM_029075	ENSMUSG00000039232	Stx11	5830405C08Rik	syntaxin 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166739717-2	chr2	166739617	166739817	+	775.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25885.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70648161-2	chr8	70648061	70648261	+	890.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_023217, exon 5 of 5)	3' UTR (NM_023217, exon 5 of 5)	11577.0	NM_023217	66522.0	Mm.154906	NM_023217	ENSMUSG00000056204	Pgpep1	2810003H13Rik|Gm19458|PAP-I|PGP|PGP-I|PGPI|Pcp	pyroglutamyl-peptidase I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-91159550-2	chr17	91159450	91159650	+	628.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-66748.0	NM_020252	18189.0	Mm.478418	NM_020252	ENSMUSG00000024109	Nrxn1	1700062G21Rik|9330127H16Rik|A230068P09Rik|mKIAA0578	neurexin I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-53411926-4	chr11	53411827	53412027	+	852.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_033565, exon 20 of 21)	exon (NM_033565, exon 20 of 21)	2730.0	NR_105885	102465554.0		NR_105885	ENSMUSG00000105908	Mir6920	mmu-mir-6920	microRNA 6920	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-31138645-2	chr17	31138545	31138745	+	662.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5637.0	NM_009363	21785.0	Mm.1825	NM_009363	ENSMUSG00000024028	Tff2	SP|mSP	trefoil factor 2 (spasmolytic protein 1)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-39820667-2	chr5	39820567	39820767	+	657.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-176036.0	NM_010474	15476.0	Mm.12559	NM_010474	ENSMUSG00000051022	Hs3st1	3-Ost|D5Wsu110e|Hsg3ost	heparan sulfate (glucosamine) 3-O-sulfotransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120793592-2	chr8	120793492	120793692	+	793.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54953.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-12872398-2	chr7	12872298	12872498	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8780.0	NM_153802	243833.0	Mm.293823	NM_153802	ENSMUSG00000060397	Zfp128	9630016P15Rik|Znf8|mZnf8	zinc finger protein 128	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-58927851-2	chr11	58927751	58927951	+	583.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_138678)	TTS (NM_138678)	9794.0	NM_138678	192194.0	Mm.22540	NM_138678	ENSMUSG00000020490	Btnl10	BUTR-1|Butr1	butyrophilin-like 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-44347551-4	chr16	44347460	44347660	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144550, intron 1 of 17)	CpG	159.0	NM_144550	212514.0	Mm.24035	NM_144550	ENSMUSG00000043065	Spice1	Ccdc52|D16Ertd480e	spindle and centriole associated protein 1	protein-coding	5.07155675154957	5.8850791532389	5.78748799099412	4.52635021173315	3.85011215813674	2.54281707197075	4.31383474526021	3.01803242135895	-2.24724804721777	2.2387581072769e-06	0.000128485089069811
Merged-chr6-72397749-2	chr6	72397649	72397849	+	771.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-7082.0	NM_016794	22320.0	Mm.1838	NM_016794	ENSMUSG00000050732	Vamp8	AU041171|Edb|endobrevin	vesicle-associated membrane protein 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-23015928-4	chr2	23015844	23016044	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077190, intron 1 of 10)	intron (NM_001077190, intron 1 of 10)	24297.0	NM_001077192	11308.0	Mm.205647	NM_007380	ENSMUSG00000058835	Abi1	E3B1|NAP1|Ssh3bp1|abi-1	abl-interactor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-37138488-2	chr10	37138388	37138588	+	958.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_008538, exon 1 of 2)	exon (NM_008538, exon 1 of 2)	438.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45707747-4	chr7	45707627	45707827	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016974, intron 2 of 3)	intron (NM_016974, intron 2 of 3)	2480.0	NM_016974	13170.0	Mm.24222	NM_016974	ENSMUSG00000059824	Dbp	-	D site albumin promoter binding protein	protein-coding	3.47601833570114	3.57919181745308	3.17132499102017	3.95174454363092	3.21316224789506	2.13290915319418	4.13860129786322	3.86173204362995	-0.0523138916897901	0.932111974216839	0.998431161219273
Merged-chr1-138292276-4	chr1	138292166	138292366	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18528.0	NM_177397	338375.0	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-118899515-1	chr2	118899415	118899615	+	727.0	f1_c57bl6.idr	Intergenic	Intergenic	-2100.0	NM_001045523	228536.0	Mm.330487	NM_001045523	ENSMUSG00000040007	Bahd1	AL022997|AW541238|Gm117|mKIAA0945	bromo adjacent homology domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-114652993-2	chr5	114652893	114653093	+	564.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_022017, intron 1 of 15)	intron (NM_022017, intron 1 of 15)	5428.0	NM_022017	63873.0	Mm.266450	NM_022017	ENSMUSG00000014158	Trpv4	0610033B08Rik|OTRPC4|Trp12|VR-OAC|VRL-2|VROAC	transient receptor potential cation channel, subfamily V, member 4	protein-coding	-0.349439902958357	-0.338232872966154	0.0853044458520899	-0.191445160839363	-0.348745573574975	-0.337398179393951	0.0942129890657571	-0.188813389420091	0.0379975250585137	0.98721952144104	1
Merged-chr5-33954589-4	chr5	33954485	33954685	+	860.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	BGLII_B|LTR|ERVK	-18327.0	NM_011914	24116.0	Mm.332320	NM_011914	ENSMUSG00000029111	Nelfa	Whsc2|Whsc2h	negative elongation factor complex member A, Whsc2	protein-coding	-1.05877568042897	-1.03501312238488	-1.04817210678232	-1.05426068996071	-1.05810152525527	-1.03216151557194	-0.188696606725984	-1.05378786495764	3.16074139804981	0.330468818528456	1
Merged-chr15-66676765-3	chr15	66676671	66676871	+	627.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009375, intron 5 of 47)	intron (NM_009375, intron 5 of 47)	6001.0	NM_009375	21819.0	Mm.441333	NM_009375	ENSMUSG00000053469	Tg	Tgn|cog	thyroglobulin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-113421674-4	chr13	113421571	113421771	+	944.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	81173.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-70818071-4	chr17	70817972	70818172	+	886.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001347414, exon 11 of 11)	exon (NM_001347414, exon 11 of 11)	28705.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-119394853-4	chr8	119394753	119394953	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019966)	promoter-TSS (NM_019966)	-39.0	NM_019966	56690.0	Mm.423037	NM_019966	ENSMUSG00000074064	Mlycd	AI324784|Mcd	malonyl-CoA decarboxylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-117778728-4	chr14	117778623	117778823	+	977.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011821, intron 4 of 8)	intron (NM_011821, intron 4 of 8)	175124.0	NR_105747	102465148.0		NR_105747	ENSMUSG00000098648	Mir6239	Gm28025|mmu-mir-6239	microRNA 6239	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-62843028-4	chr5	62842964	62843164	+	900.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001170705, exon 6 of 9)	exon (NM_001170705, exon 6 of 9)	29241.0	NM_001170705	100322896.0	Mm.479821	NM_001170705	ENSMUSG00000090326	Dthd1	Gm17384	death domain containing 1	protein-coding	2.81283042500481	2.69177651317019	2.59709423679322	3.21930722437648	3.28185001924525	3.08403820795747	1.58804632329909	3.81868154829967	0.546009834841054	0.468803794378594	0.924737467231384
Merged-chr8-70627976-2	chr8	70627903	70628103	+	601.333374	f0_c57.idr|f1_c57bl6.idr	Intergenic	RLTR26_Mus|LTR|ERVK	4092.0	NM_011819	23886.0	Mm.31325	NM_011819	ENSMUSG00000038508	Gdf15	MIC-1|NAG-1|SBF	growth differentiation factor 15	protein-coding	0.301352188474504	1.58587923038434	0.767394505447846	1.59788963225472	0.304136060044285	0.347092469628855	0.33352731860991	0.321647279490247	-4.82179642691617	0.00745384297970571	0.0886042352085626
Merged-chr13-49381422-4	chr13	49381323	49381523	+	926.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039179, intron 6 of 6)	intron (NM_001039179, intron 6 of 6)	-39800.0	NR_075085	75678.0	Mm.390586	NM_199056	ENSMUSG00000021385	Ippk	1810043M15Rik|InsP6	inositol 1,3,4,5,6-pentakisphosphate 2-kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43492425-4	chr4	43492333	43492533	+	942.2333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001037913)	promoter-TSS (NM_001037913)	626.0	NR_001460	19782.0		NR_001460	ENSMUSG00000088088	Rmrp	1110032O22Rik|Rmrpr	RNA component of mitochondrial RNAase P	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-108309228-5	chr9	108309237	108309437	+	943.2000119999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001313961, intron 1 of 5)	intron (NM_001313961, intron 1 of 5)	2540.0	NM_001313962	11848.0	Mm.757	NM_016802	ENSMUSG00000007815	Rhoa	Arha|Arha1|Arha2	ras homolog family member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70778290-2	chr11	70778190	70778390	+	807.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13843.0	NM_177565	193043.0	Mm.40966	NM_177565	ENSMUSG00000043602	Zfp3	AI854635|B230309J24|Fnp-1|Zfp-3	zinc finger protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134152748-2	chr6	134152648	134152848	+	569.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 3 of 8)	intron (NM_001303102, intron 3 of 8)	117048.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-64378322-1	chr13	64378222	64378422	+	682.0	f1_c57bl6.idr	Intergenic	MT2B|LTR|ERVL	-7802.0	NM_009984	13039.0	Mm.930	NM_009984	ENSMUSG00000021477	Ctsl	1190035F06Rik|CatL|Ctsl1|MEP|fs|nkt	cathepsin L	protein-coding	2.43174036223477	1.55394512214178	3.6600088009521	2.4428799808854	2.66463424964207	3.19155905778639	3.24831253794433	2.4561581805424	0.301054164558061	0.709172645859711	0.998431161219273
Merged-chr12-40559307-4	chr12	40559208	40559408	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	113255.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-23571945-5	chr2	23571814	23572014	+	988.980957	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001165997, exon 1 of 12)	5' UTR (NM_001165997, exon 1 of 12)	190.0	NM_029773	76857.0	Mm.276415	NM_029773	ENSMUSG00000026771	Spopl	4921517N04Rik|AU014935|BB233739|E430033K04Rik	speckle-type POZ protein-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-164487205-5	chr2	164487059	164487259	+	800.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001048229)	promoter-TSS (NM_001048229)	282.0	NM_001048228	52840.0	Mm.256927	NM_026797	ENSMUSG00000017734	Dbndd2	1110017A21Rik|2900022J10Rik|AU041050|AW048677|D2Bwg0891e|Nkip|R74724	dysbindin (dystrobrevin binding protein 1) domain containing 2	protein-coding	0.854495274867167	0.914880230465008	1.85465290859646	2.13582840776199	0.858440534564351	1.37776542615848	1.75995043154992	1.69814279350251	-0.326951393068786	0.809863218897715	0.998431161219273
Merged-chr3-90708620-2	chr3	90708466	90708666	+	962.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12845.0	NM_001281852	20202.0	Mm.2128	NM_009114	ENSMUSG00000056071	S100a9	60B8Ag|AW546964|BEE22|Cagb|GAGB|L1Ag|MRP14|p14	S100 calcium binding protein A9 (calgranulin B)	protein-coding	0.226003898274755	0.25201350869182	1.17360005598124	0.237025180026959	0.86617921093025	0.253900763181056	0.88687063298321	0.238175672948831	0.209414893557062	0.917471946255479	1
Merged-chr15-35464701-1	chr15	35464601	35464801	+	559.0	f0_balb.idr	intron (NM_177151, intron 16 of 61)	ORR1D2|LTR|ERVL-MaLR	93155.0	NM_177151	666173.0	Mm.309250	NM_177151	ENSMUSG00000037646	Vps13b	1810042B05Rik|2310042E16Rik|4732488H20|C330002D13Rik|C87206|Coh1|D230005K13|mKIAA0532|mKIAA5032	vacuolar protein sorting 13B	protein-coding	-1.13733826612909	-0.773126806886787	-1.12539854384944	-0.969128161250622	-1.13686929760085	-0.939230642719222	-1.12291233877159	-1.13280510181953	-1.41907545495503	0.63770795617537	1
Merged-chr10-18928044-1	chr10	18927944	18928144	+	782.0	f1_balb.idr	Intergenic	Intergenic	82973.0	NM_022032	64058.0	Mm.28209	NM_022032	ENSMUSG00000019851	Perp	1110017A08Rik|KCP1|KRTCAP1|PIGPC1|THW	PERP, TP53 apoptosis effector	protein-coding	2.36475920893419	2.00589058287498	2.91530977443337	1.22220078537616	3.19581058726898	1.2981070547828	2.38191877688498	1.88640219071184	0.258132213889089	0.802598368188414	0.998431161219273
Merged-chr14-55672234-4	chr14	55672119	55672319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177992)	promoter-TSS (NM_177992)	-16.0	NM_177992	105446.0	Mm.390685	NM_177992	ENSMUSG00000002326	Gmpr2	1810008P16Rik|5730544D12Rik|AA959850|GMPR 2	guanosine monophosphate reductase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-74939475-4	chr15	74939387	74939587	+	999.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-15564.0	NM_001164039	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	3.3193602538475	3.55138970971502	3.79342019544261	3.16328576809654	3.59961498641102	3.57678302789724	2.49220844150127	3.51115972997462	-0.163184953814184	0.776690936162132	0.998431161219273
Merged-chr11-20202915-4	chr11	20202820	20203020	+	907.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008996, intron 1 of 5)	intron (NM_008996, intron 1 of 5)	1508.0	NM_008996	19324.0	Mm.271944	NM_008996	ENSMUSG00000020149	Rab1a	Gtbp|Rab-1|Rab1|Ypt1|mKIAA3012	RAB1A, member RAS oncogene family	protein-coding	-0.291681506753771	-0.273098240069776	0.746085481895309	-0.283816635892636	-0.290505171628063	-0.271747133427572	0.246284270572437	-0.282994747201687	-1.38469967503044	0.580822236219639	1
Merged-chr5-66067338-4	chr5	66067251	66067451	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139065, intron 2 of 6)	intron (NM_139065, intron 2 of 6)	30828.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-120965315-2	chr9	120965215	120965415	+	628.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177589, intron 36 of 36)	intron (NM_177589, intron 36 of 36)	10229.0	NR_106058	102465661.0		NR_106058	ENSMUSG00000106193	Mir7090	mmu-mir-7090	microRNA 7090	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-145804068-2	chr6	145803968	145804168	+	862.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4315.0	NM_027760	71323.0	Mm.158669	NM_027760	ENSMUSG00000030259	Rassf8	5133400D11Rik|AA815821|AW123240|Hoj1|mHoj-1	Ras association (RalGDS/AF-6) domain family (N-terminal) member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-121972729-2	chr10	121972629	121972829	+	550.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081037, intron 1 of 21)	intron (NM_001081037, intron 1 of 21)	74586.0	NM_001242411	117600.0	Mm.288698	NM_001081037	ENSMUSG00000020121	Srgap1	4930572H05Rik|Arhgap13	SLIT-ROBO Rho GTPase activating protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99053047-4	chr7	99052950	99053150	+	960.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 6 of 14)	RLTR25B|LTR|ERVK	88094.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-74520852-2	chr11	74520752	74520952	+	868.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001015046, intron 2 of 24)	MER113|DNA|hAT-Charlie	69306.0	NM_001015046	380711.0	Mm.425690	NM_001015046	ENSMUSG00000038807	Rap1gap2	AU067654|Garnl4|Gm1561|mKIAA1039	RAP1 GTPase activating protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-20644897-1	chr18	20644797	20644997	+	547.0	f1_c57bl6.idr	intron (NR_155534, intron 1 of 2)	intron (NR_155534, intron 1 of 2)	-20353.0	NM_013697	22139.0	Mm.2108	NM_013697	ENSMUSG00000061808	Ttr	AA408768|AI787086|D17860|prealbumin	transthyretin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-144330517-4	chr1	144330412	144330612	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-81408.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-49632829-2	chr4	49632729	49632929	+	562.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_182999, intron 2 of 20)	MIRb|SINE|MIR	769.0	NM_182999	109331.0	Mm.24765	NM_182999	ENSMUSG00000028309	Rnf20	4833430L21Rik|AW540162|C79397|mKIAA4116	ring finger protein 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27287811-1	chr2	27287711	27287911	+	563.0	f1_c57bl6.idr	intron (NR_133905, intron 12 of 29)	B2_Mm2|SINE|B2	-40508.0	NM_138665	192166.0	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88411922-2	chr3	88411822	88412022	+	725.666626	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_178696, exon 4 of 4)	3' UTR (NM_178696, exon 4 of 4)	-1525.0	NM_025928	67037.0	Mm.36715	NM_025928	ENSMUSG00000028066	Pmf1	2600009M07Rik|AL033286|AW060657	polyamine-modulated factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-24297828-2	chr7	24297728	24297928	+	557.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009561, intron 2 of 6)	(CA)n|Simple_repeat|Simple_repeat	1721.0	NM_009561	22719.0	Mm.12832	NM_009561	ENSMUSG00000050605	Zfp61	-	zinc finger protein 61	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-104948143-3	chr13	104948042	104948242	+	992.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_029879, exon 6 of 6)	3' UTR (NM_029879, exon 6 of 6)	-84249.0	NM_029984	77803.0	Mm.159995	NM_029984	ENSMUSG00000042655	Fam159b	A930021C24Rik|Shisal2b	family with sequence similarity 159, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-140080904-2	chr7	140080804	140081004	+	900.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_026769, intron 1 of 5)	intron (NM_026769, intron 1 of 5)	1397.0	NM_001190386	68566.0	Mm.44241	NM_026769	ENSMUSG00000025468	Caly	0710001P07Rik|1110004A22Rik|Calcyon|Drd1ip	calcyon neuron-specific vesicular protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-11481593-2	chr8	11481493	11481693	+	647.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur3|SINE|Alu	-3094.0	NM_011227	19332.0	Mm.37632	NM_011227	ENSMUSG00000031504	Rab20	AA536966|D8Ertd350e	RAB20, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-33929484-4	chr17	33929367	33929567	+	989.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009059)	promoter-TSS (NM_009059)	-427.0	NM_009059	19732.0	Mm.43777	NM_009059	ENSMUSG00000041354	Rgl2	KE1.5|Rab2l|Rgt2|Rlf	ral guanine nucleotide dissociation stimulator-like 2	protein-coding	0.502462280488047	0.356101952489051	1.58297341838405	0.540569290529266	0.324173216275441	0.358544731664593	1.15682546615878	0.544504771282857	-0.950423166306165	0.577872009248745	0.96585843058813
Merged-chr11-52360996-4	chr11	52360901	52361101	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_011694, exon 1 of 9)	5' UTR (NM_011694, exon 1 of 9)	139.0	NM_011694	22333.0	Mm.3555	NM_011694	ENSMUSG00000020402	Vdac1	AL033343|Vdac5|mVDAC1|mVDAC5	voltage-dependent anion channel 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-76369414-2	chr16	76369314	76369514	+	964.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173440, intron 1 of 3)	intron (NM_173440, intron 1 of 3)	3635.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-45017108-2	chr4	45017008	45017208	+	554.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1501.0	NM_022811	64424.0	Mm.282932	NM_022811	ENSMUSG00000028318	Polr1e	53kDa|AU042259|D030019D19Rik|Paf53|Praf1	polymerase (RNA) I polypeptide E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123034150-2	chr5	123034050	123034250	+	624.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12866.0	NM_029112	74890.0	Mm.141383	NM_029112	ENSMUSG00000029477	Morn3	4930438O03Rik	MORN repeat containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-27302905-4	chr3	27302792	27302992	+	900.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14185.0	NM_009425	22035.0	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46762624-2	chr19	46762524	46762724	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_033569, exon 1 of 8)	exon (NM_033569, exon 1 of 8)	1015.0	NM_001102471	94219.0	Mm.306903	NM_033569	ENSMUSG00000064105	Cnnm2	AU015877|AW048635|Acdp2|Clp2	cyclin M2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-80150268-2	chr12	80150168	80150368	+	707.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17424.0	NR_033514	69548.0	Mm.269712	NR_033514		2310015A10Rik	5330419I17Rik	RIKEN cDNA 2310015A10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-115613048-2	chr8	115612948	115613148	+	810.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	93846.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-68301176-2	chr10	68301109	68301309	+	607.833374	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	19933.0	NR_045357	75148.0	Mm.23505	NR_045357	ENSMUSG00000112157	4930545H06Rik	-	RIKEN cDNA 4930545H06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-3519508-4	chr2	3519440	3519640	+	960.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177647, intron 2 of 3)	intron (NM_177647, intron 2 of 3)	6475.0	NM_177647	227526.0	Mm.211455	NM_177647	ENSMUSG00000039496	Cdnf	9330140G23|Armetl1	cerebral dopamine neurotrophic factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83503333-1	chr6	83503233	83503433	+	864.0	f1_c57bl6.idr	intron (NR_149734, intron 1 of 6)	intron (NR_149734, intron 1 of 6)	3636.0	NM_013764	27369.0	Mm.42234	NM_013764	ENSMUSG00000014554	Dguok	dGK|dGK1|dGK2|dGK3	deoxyguanosine kinase	protein-coding	0.477520740747033	0.723513883930103	1.33460905424302	0.49059233932802	0.787331402269374	1.31088293367941	0.500577733641447	0.97183130262648	0.513915693865629	0.755263704474204	0.998431161219273
Merged-chr14-57730050-4	chr14	57729961	57730161	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153382, intron 1 of 1)	intron (NM_153382, intron 1 of 1)	4357.0	NM_153382	50523.0	Mm.347899	NM_015771	ENSMUSG00000021959	Lats2	4932411G09Rik|AV277261|AW228608	large tumor suppressor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-61929109-2	chr11	61929009	61929209	+	978.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019921, intron 1 of 14)	intron (NM_019921, intron 1 of 14)	1148.0	NM_019921	56697.0	Mm.274404	NM_019921	ENSMUSG00000047804	Akap10	1500031L16Rik|B130049N18Rik|D-AKAP-2|D-AKAP2|PRKA10	A kinase (PRKA) anchor protein 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-41963011-4	chr10	41962896	41963096	+	948.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034858, intron 10 of 17)	intron (NM_001034858, intron 10 of 17)	55386.0	NM_001034858	213402.0	Mm.211320	NM_001034858	ENSMUSG00000071324	Armc2	2610018I05Rik	armadillo repeat containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32352214-2	chr2	32352114	32352314	+	834.083313	f1_balb.idr|f1_c57bl6.idr	intron (NM_010065, intron 1 of 20)	intron (NM_010065, intron 1 of 20)	1115.0	NM_001301737	13429.0	Mm.44736	NM_010065	ENSMUSG00000026825	Dnm1	AI838169|Dnm|Ftfl|mKIAA4093	dynamin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115685103-2	chr11	115685003	115685203	+	912.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001313936, intron 2 of 5)	intron (NM_001313936, intron 2 of 5)	14431.0	NM_001313937	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-109063202-3	chr3	109063109	109063309	+	882.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17290.0	NM_029054	74686.0	Mm.307948	NM_029054	ENSMUSG00000027880	Slc25a54	4930443G12Rik|SCaMC-1like	solute carrier family 25, member 54	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-62817949-1	chr11	62817849	62818049	+	541.0	f1_c57bl6.idr	Intergenic	Intergenic	-2304.0	NM_053169	94092.0	Mm.117087	NM_053169	ENSMUSG00000047821	Trim16	9130006M08Rik|AI482483|EBBP	tripartite motif-containing 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-45282686-4	chr9	45282594	45282794	+	991.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13545.0	NM_001324486	16154.0	Mm.379327	NM_008348	ENSMUSG00000032089	Il10ra	AW553859|CDw210|CDw210a|IL-10R1|IL-10RA|Il10r|mIL-10R	interleukin 10 receptor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-13614714-2	chr9	13614614	13614814	+	817.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-5275.0	NM_001013813	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-68958002-2	chr9	68957888	68958088	+	731.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013646, intron 1 of 10)	intron (NM_013646, intron 1 of 10)	192642.0	NR_033299	320440.0	Mm.483129	NM_177159		9530091C08Rik	-	RIKEN cDNA 9530091C08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-114781074-4	chr5	114780973	114781173	+	793.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026718, intron 1 of 14)	intron (NM_026718, intron 1 of 14)	5933.0	NM_026718	68420.0	Mm.275554	NM_026718	ENSMUSG00000041870	Ankrd13a	1100001D10Rik|ANKRD13|AU046136	ankyrin repeat domain 13a	protein-coding	1.14410815110718	0.752738227939523	1.37578298830585	1.69719940861616	1.36366204830883	0.755440591219813	1.26195965542378	0.732897695872255	-0.933294438111389	0.525573411162354	0.948340152465298
Merged-chr2-27739679-4	chr2	27739547	27739747	+	979.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290481, intron 2 of 9)	intron (NM_001290481, intron 2 of 9)	29064.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-72462045-4	chr12	72461958	72462158	+	975.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030070, intron 10 of 24)	intron (NM_030070, intron 10 of 24)	19809.0	NM_001142729	78257.0	Mm.266280	NM_030070	ENSMUSG00000021090	Lrrc9	4921529O18Rik|4930432K16Rik	leucine rich repeat containing 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141869814-8	chr4	141869673	141869873	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025994, intron 1 of 3)	intron (NM_025994, intron 1 of 3)	5147.0	NM_025994	27984.0	Mm.395598	NM_025994	ENSMUSG00000040659	Efhd2	2600015J22Rik|AA408606|D4Wsu27e	EF hand domain containing 2	protein-coding	4.92166963092633	4.42158830067548	5.11925412313028	4.78283310205143	4.5167250095109	5.00949015088449	5.15366382449435	3.24062999396471	-0.230239042318551	0.591012947855005	0.969695538366903
Merged-chr3-84656361-3	chr3	84656283	84656483	+	860.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9809.0	NM_177260	320782.0	Mm.107370	NM_177260	ENSMUSG00000056498	Tmem154	9930117H01Rik	transmembrane protein 154	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-11271009-1	chr8	11270909	11271109	+	546.0	f0_balb.idr	intron (NM_009931, intron 1 of 51)	intron (NM_009931, intron 1 of 51)	-41796.0	NM_009932	12827.0	Mm.181021	NM_009932	ENSMUSG00000031503	Col4a2	Col4a-2	collagen, type IV, alpha 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117829907-4	chr10	117829764	117829964	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024457, intron 1 of 7)	intron (NM_024457, intron 1 of 7)	16110.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-15300877-3	chr10	15300781	15300981	+	827.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-490896.0	NR_131087	77538.0	Mm.128235	NR_131087	ENSMUSG00000112227	C330004P14Rik	-	RIKEN cDNA C330004P14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-57180659-2	chr16	57180559	57180759	+	634.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_026254, intron 14 of 17)	intron (NM_026254, intron 14 of 17)	-13327.0	NM_023175	52633.0	Mm.383203	NM_023175	ENSMUSG00000022751	Nit2	1190017B19Rik|D16Ertd502e	nitrilase family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-79753407-2	chr1	79753307	79753507	+	636.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027057, intron 1 of 4)	intron (NM_027057, intron 1 of 4)	8362.0	NM_001111279	69368.0	Mm.293273	NM_027057	ENSMUSG00000073643	Wdfy1	1700013B03Rik|1700120F24Rik|FENS-1|Jr1|WDF1|ZFYVE17|mKIAA1435	WD repeat and FYVE domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-22653170-4	chr11	22653095	22653295	+	905.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	140912.0	NM_153596	103765.0	Mm.221274	NM_153596	ENSMUSG00000049904	Tmem17	AI503894|AW049890	transmembrane protein 17	protein-coding	0.0946782086851674	0.650615469321508	0.691710037782837	0.10005238271819	0.434266079871221	0.108577664350758	0.104265597918078	0.100622208465134	-1.9435491481409	0.383200396042654	1
Merged-chr15-39784091-4	chr15	39784011	39784211	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164466, intron 9 of 9)	intron (NM_001164466, intron 9 of 9)	-12934.0	NR_045788	100503072.0	Mm.446661	NR_045788	ENSMUSG00000087695	Gm16291	-	predicted gene 16291	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-132140330-2	chr1	132140230	132140430	+	686.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008795)	promoter-TSS (NM_008795)	-645.0	NM_008795	18557.0	Mm.28130	NM_008795	ENSMUSG00000026437	Cdk18	AA682070|Ctk18|Pctk3	cyclin-dependent kinase 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36472490-4	chr18	36472378	36472578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17983.0	NM_026027	67199.0	Mm.30184	NM_026027	ENSMUSG00000024346	Pfdn1	2700086I23Rik|AA408327|AU044714	prefoldin 1	protein-coding	4.80061585604269	2.85875804598552	3.05019895562159	4.01596374266482	4.25001715348537	3.19931666744844	4.16182280068519	5.46454465369962	0.766970931166644	0.200734954730304	0.684598631851673
Merged-chr5-45668491-2	chr5	45668391	45668591	+	734.333313	f1_balb.idr|f1_c57bl6.idr	TTS (NR_073433)	TTS (NR_073433)	1217.0	NR_073433	69788.0	Mm.381492	NR_073433	ENSMUSG00000104986	1600023N17Rik	AV119442	RIKEN cDNA 1600023N17 gene	ncRNA	-0.392098081396786	0.342686786042362	-0.205874215617213	-0.221889912382402	-0.391304434877531	-0.378428689757627	-0.382622947818296	-0.219084828366661	-2.67860512981687	0.254598236060001	1
Merged-chr11-86613175-1	chr11	86613075	86613275	+	692.0	f0_c57.idr	intron (NM_001356531, intron 7 of 11)	B3|SINE|B2	-29017.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126866429-2	chr8	126866329	126866529	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17409.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-67373266-4	chr7	67373161	67373361	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291191)	promoter-TSS (NM_001291191)	-403.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-15049319-4	chr2	15049215	15049415	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001165942)	promoter-TSS (NM_001165942)	-3.0	NM_001355685	74455.0	Mm.478923	NM_028950	ENSMUSG00000026707	Nsun6	4933403D21Rik|4933414E04Rik|NOPD1	NOL1/NOP2/Sun domain family member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139468182-2	chr5	139468082	139468282	+	961.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7648.0	NM_028469	73212.0	Mm.84294	NM_028469	ENSMUSG00000053553	3110082I17Rik	AW411904	RIKEN cDNA 3110082I17 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-40734072-2	chr19	40734012	40734212	+	688.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001304721, intron 8 of 9)	intron (NM_001304721, intron 8 of 9)	74342.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	1.65748587311819	2.11376171153458	1.81658318655821	0.921406549120903	0.896103133082338	1.61768084262901	2.23166672644689	0.924461163881226	-0.399342876811335	0.761288434124927	0.998431161219273
Merged-chr6-85380678-4	chr6	85380576	85380776	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6042.0	NM_001003955	52055.0	Mm.220334	NM_177466	ENSMUSG00000051343	Rab11fip5	9130206P09Rik|C75969|D6Ertd32e|GAF1|RIP11	RAB11 family interacting protein 5 (class I)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-8622971-2	chr11	8622871	8623071	+	792.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 1 of 30)	intron (NM_001083587, intron 1 of 30)	41564.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-87026207-4	chr1	87026124	87026324	+	914.287476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001172157, intron 15 of 21)	Lx8|LINE|L1	63704.0	NM_007433	11650.0	Mm.195224	NM_007433	ENSMUSG00000026246	Alppl2	Akp5|C77216|D1Ertd816e|EAP	alkaline phosphatase, placental-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-33273116-4	chr6	33273025	33273225	+	959.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347089, intron 2 of 9)	B1F|SINE|Alu	23997.0	NM_001347089	20336.0	Mm.265512	NM_009148	ENSMUSG00000029763	Exoc4	C78892|Sec8|Sec8l1	exocyst complex component 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-62846455-4	chr5	62846363	62846563	+	938.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170705, intron 6 of 8)	intron (NM_001170705, intron 6 of 8)	32640.0	NM_001170705	100322896.0	Mm.479821	NM_001170705	ENSMUSG00000090326	Dthd1	Gm17384	death domain containing 1	protein-coding	-0.343711755991256	-0.310073976658988	-0.320607261301659	-0.329044829317331	-0.341474482669374	1.1710920707337	0.157886252805421	-0.327550259266816	4.736232851885	0.163568683831438	0.626436785175582
Merged-chr11-93888099-3	chr11	93888036	93888236	+	797.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346525, intron 2 of 17)	B2_Mm1t|SINE|B2	1917.0	NM_134012	103537.0	Mm.210334	NM_134012	ENSMUSG00000059474	Mbtd1	AA408199|AI194990|hemp	mbt domain containing 1	protein-coding	-0.34864695308336	0.560614876272622	-0.337264442179309	-0.341522662823887	-0.347582698192626	0.221603381639236	-0.336051619064456	-0.340776987764218	-0.983777206517268	0.702104919150742	1
Merged-chr2-98666870-1	chr2	98666770	98666970	+	1000.0	f0_balb.idr	Intergenic	GSAT_MM|Satellite|Satellite	1199213.0	NM_178725	241568.0	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141766578-4	chr4	141766493	141766693	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172338, intron 12 of 14)	intron (NM_172338, intron 12 of 14)	19918.0	NM_001081408	75986.0	Mm.30032	NM_001081408	ENSMUSG00000040706	Agmat	5033405N08Rik	agmatine ureohydrolase (agmatinase)	protein-coding	5.73716016381147	5.3360826847811	5.63734516069746	6.00055293458266	5.37427226845986	5.54413740320233	5.99939849992767	6.31727037361019	0.174491633161409	0.537510329749687	0.953963493057627
Merged-chr9-65588021-5	chr9	65587926	65588126	+	796.866638	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001357526, exon 2 of 13)	exon (NM_001357526, exon 2 of 13)	866.0	NM_001357527	208084.0	Mm.211032	NM_172453	ENSMUSG00000041064	Pif1	4631410M14|AI449441	PIF1 5'-to-3' DNA helicase	protein-coding	2.16126710325973	1.89100889692535	1.03105237282145	2.51499273414252	2.45992863248145	1.56071985011107	1.03697797785485	1.0136303274617	-0.810690237920468	0.51411641609237	0.946746458652858
Merged-chr16-22533595-2	chr16	22533495	22533695	+	550.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346673, intron 19 of 23)	intron (NM_001346673, intron 19 of 23)	-1411.0	NR_106170	102465887.0		NR_106170	ENSMUSG00000099071	Mir8095	Gm27566|mmu-mir-8095	microRNA 8095	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-89315107-2	chr6	89315007	89315207	+	676.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29382.0	NR_131021	75131.0	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	Gm44205	RIKEN cDNA 4930512J16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-88267281-4	chr1	88267189	88267389	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172505, intron 4 of 4)	intron (NM_172505, intron 4 of 4)	2119.0	NR_040291	78605.0	Mm.384762	NR_040291		6430706D22Rik	-	RIKEN cDNA 6430706D22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-86206127-2	chr15	86206027	86206227	+	867.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-8332.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83291648-4	chr11	83291558	83291758	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028363)	promoter-TSS (NR_028363)	-41.0	NR_028363	613254.0	Mm.383758	NR_028363	ENSMUSG00000093483	AA465934	-	expressed sequence AA465934	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-119837616-3	chr8	119837523	119837723	+	867.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028071, intron 2 of 3)	intron (NM_028071, intron 2 of 3)	2956.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-64617744-4	chr1	64617639	64617839	+	950.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025964)	promoter-TSS (NM_025964)	-571.0	NM_025964	67099.0	Mm.46394	NM_025964	ENSMUSG00000025956	Mettl21a	2310038H17Rik|AI464204|Fam119a	methyltransferase like 21A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-60893360-2	chr13	60893260	60893460	+	753.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	4087.0	NM_007797	13025.0	Mm.30144	NM_007797	ENSMUSG00000074874	Ctla2b	AW545568|Ctla-2b	cytotoxic T lymphocyte-associated protein 2 beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-117342876-4	chr2	117342764	117342964	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011246)	promoter-TSS (NM_011246)	13.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-12000887-3	chr19	12000788	12000988	+	934.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35044.0	NM_001033174	76303.0	Mm.291279	NM_001033174	ENSMUSG00000024687	Osbp	1110018F06Rik|AW559088|mKIAA4220	oxysterol binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-11818933-2	chr11	11818833	11819033	+	691.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_016672, intron 13 of 14)	intron (NM_016672, intron 13 of 14)	-9971.0	NM_001163360	60530.0	Mm.236114	NM_021891	ENSMUSG00000035455	Fignl1	-	fidgetin-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-87848978-3	chr1	87848764	87848964	+	687.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4423.0	NM_177646	227333.0	Mm.277217	NM_177646	ENSMUSG00000070738	Dgkd	AI841987|D330025K09|DGKdelta|dgkd-2	diacylglycerol kinase, delta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-32932650-3	chr14	32932551	32932751	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178791, intron 7 of 7)	intron (NM_178791, intron 7 of 7)	-58731.0	NM_001146021	67580.0	Mm.46115	NM_026253	ENSMUSG00000041673	Lrrc18	4930442L21Rik|MTLR1	leucine rich repeat containing 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-125482357-1	chr8	125482257	125482457	+	647.0	f1_c57bl6.idr	intron (NM_001357372, intron 3 of 21)	intron (NM_001357372, intron 3 of 21)	10476.0	NM_001081337	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	1.10149167996318	0.727698961163561	1.32326898652606	1.03609965546091	1.39780370526027	0.730071352719789	1.44339500426813	0.889903820922491	0.413524237987861	0.772260591121804	0.998431161219273
Merged-chr15-31342176-4	chr15	31342061	31342261	+	986.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027496, intron 1 of 3)	intron (NM_027496, intron 1 of 3)	25598.0	NM_001357923	67434.0	Mm.102470	NM_026153	ENSMUSG00000022237	Ankrd33b	0610012A05Rik|3021401C12Rik|5730557B15Rik	ankyrin repeat domain 33B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-18244943-2	chr16	18244843	18245043	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011239, intron 3 of 5)	intron (NM_011239, intron 3 of 5)	3751.0	NM_011239	19385.0	Mm.235287	NM_011239	ENSMUSG00000005732	Ranbp1	Htf9a	RAN binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-153308597-2	chr3	153308497	153308697	+	806.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_011372, intron 3 of 4)	intron (NM_011372, intron 3 of 4)	-9948.0	NR_126464	75489.0	Mm.443252	NR_126464	ENSMUSG00000105023	1700012D16Rik	-	RIKEN cDNA 1700012D16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-60091211-1	chr11	60091111	60091311	+	757.0	f0_balb.idr	Intergenic	Intergenic	-13802.0	NM_009021	19377.0	Mm.296366	NM_009021	ENSMUSG00000062115	Rai1	Gt1	retinoic acid induced 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-19008813-3	chr10	19008733	19008933	+	981.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166402, intron 1 of 7)	intron (NM_001166402, intron 1 of 7)	3130.0	NM_001166402	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	3.12653172010951	2.63915392476563	3.44473094147663	3.15179999225239	1.70653756958475	2.50970160272987	2.69781023402945	2.82927781782008	-1.17325245769264	0.105766101981608	0.507322104840883
Merged-chr5-128981847-2	chr5	128981718	128981918	+	794.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8418.0	NM_001359022	13852.0	Mm.260716	NM_007941	ENSMUSG00000029428	Stx2	AW538950|Epim|G1-536-1|Syn-2|repro34	syntaxin 2	protein-coding	-0.393337355164391	-0.380908004361161	-0.209161694622105	0.0335264332165804	-0.392563083917716	0.23860860461413	-0.384087093127693	-0.387579669516307	0.289473966954907	0.908739147182829	1
Merged-chr14-55737156-2	chr14	55737056	55737256	+	778.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	8528.0	NM_026819	52585.0	Mm.21623	NM_026819	ENSMUSG00000002332	Dhrs1	1110029G07Rik|AW112170|D14Ertd484e	dehydrogenase/reductase (SDR family) member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-70790025-2	chr6	70789925	70790125	+	721.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009075, intron 1 of 8)	intron (NM_009075, intron 1 of 8)	2150.0	NM_009075	19895.0	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122571801-2	chr8	122571701	122571901	+	656.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_026014, exon 8 of 10)	exon (NM_026014, exon 8 of 10)	3786.0	NM_026014	67177.0	Mm.21873	NM_026014	ENSMUSG00000006585	Cdt1	2610318F11Rik|AW545653|C76791|Ris2	chromatin licensing and DNA replication factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71288691-4	chr8	71288531	71288731	+	907.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142322, intron 1 of 39)	B3|SINE|B2	15917.0	NM_001142323	17925.0	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	0.137054525762737	0.15556377054653	0.604551479350407	0.14482917433553	0.866562513758445	0.156928380508818	0.331664365483512	0.576621348503341	1.65974042112805	0.413265892955547	1
Merged-chr16-26581627-4	chr16	26581547	26581747	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134103)	promoter-TSS (NM_134103)	-58.0	NM_001159318	16180.0	Mm.253424	NM_008364	ENSMUSG00000022514	Il1rap	6430709H04Rik|AI255955|AV239853|IL-1RAcP	interleukin 1 receptor accessory protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-79270501-4	chr15	79270393	79270593	+	870.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177580, intron 7 of 13)	CpG	15016.0	NM_177580	207495.0	Mm.309647	NM_177580	ENSMUSG00000018126	Baiap2l2	BC048937	BAI1-associated protein 2-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-60502451-1	chr18	60502351	60502551	+	629.75	f0_balb.idr	promoter-TSS (NM_134133)	promoter-TSS (NM_134133)	-468.0	NM_134133	106878.0	Mm.273197	NM_134133	ENSMUSG00000038059	Smim3	2010002N04Rik|AI195350|AW561905|Nid67|cI-41	small integral membrane protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46514301-2	chr19	46514201	46514401	+	799.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_053100, intron 3 of 5)	ID_B1|SINE|B4	12653.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0.446859902308897	0.229924082731541	0.378407381731692	0.221858521614414	0.551350926872706	0.230961804361061	0.732417007066734	0.600343220455214	1.83395760594803	0.33370310760198	1
Merged-chr8-110340496-2	chr8	110340396	110340596	+	575.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172916, intron 8 of 86)	intron (NM_172916, intron 8 of 86)	73519.0	NM_172916	244653.0	Mm.444803	NM_172916	ENSMUSG00000059854	Hydin	1700034M11Rik|4930545D19Rik|4932703P14|672398|A830061H17|AC069308.21gm4|Gm9558|hy-3|hy3|hyrh	HYDIN, axonemal central pair apparatus protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-19715117-5	chr14	19715021	19715221	+	723.033325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36136.0	NM_008695	18074.0	Mm.20348	NM_008695	ENSMUSG00000021806	Nid2	AW547149|Ly111|NID-2|entactin-2|nidogen-2	nidogen 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-87283997-4	chr17	87283875	87284075	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028639, intron 1 of 19)	intron (NM_028639, intron 1 of 19)	1089.0	NM_028639	225049.0	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-118499818-2	chr1	118499718	118499918	+	648.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359330, intron 10 of 39)	B3A|SINE|B2	-40553.0	NR_027901	68204.0	Mm.443536	NR_027901	ENSMUSG00000107722	2900060B14Rik	-	RIKEN cDNA 2900060B14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81704301-1	chr15	81704201	81704401	+	1000.0	f1_c57bl6.idr	TTS (NM_001146174)	TTS (NM_001146174)	-7014.0	NM_001164320	214685.0	Mm.393287	NM_001164320	ENSMUSG00000063765	Chadl	AY100452|D930017K21Rik	chondroadherin-like	protein-coding	-0.0946219092903975	-0.450763737626237	-0.45456580292864	-0.457493327143864	-0.461621525783432	0.163689306022858	-0.453727966939339	-0.29330713515406	1.22138085700137	0.636668310244764	1
Merged-chr6-37420237-2	chr6	37420137	37420337	+	749.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178661, intron 1 of 11)	intron (NM_178661, intron 1 of 11)	21911.0	NM_178661	208647.0	Mm.169929	NM_178661	ENSMUSG00000038648	Creb3l2	BBF2H7|C530025K05Rik|SCIRR69	cAMP responsive element binding protein 3-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-124658848-2	chr4	124658748	124658948	+	905.8000490000001	f1_balb.idr|f1_c57bl6.idr	exon (NM_011141, exon 1 of 1)	exon (NM_011141, exon 1 of 1)	1202.0	NM_011141	18991.0	Mm.297371	NM_011141	ENSMUSG00000090125	Pou3f1	Oct-6|Oct6|Otf-6|Otf6|Scip|Test1|Tst-1|Tst1	POU domain, class 3, transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-51645211-1	chr16	51645111	51645311	+	597.0	f1_c57bl6.idr	Intergenic	Lx|LINE|L1	342076.0	NR_153657	629091.0	Mm.364775	NR_153657		Gm29686	-	predicted gene, 29686	ncRNA	1.76745350218566	0.679444757461651	0.649932932540474	2.9933731701976	2.2166150090697	0.685873183420714	0.656587797795082	0.630220791347715	-1.53137294159081	0.639625816281453	0.982599433509505
Merged-chr6-54682255-2	chr6	54682157	54682357	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289741, intron 1 of 4)	CpG	633.0	NM_001289740	68235.0	Mm.233860	NM_026629	ENSMUSG00000038065	Mturn	2410066E13Rik|AI448550|B230212L03Rik	maturin, neural progenitor differentiation regulator homolog (Xenopus)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-123305968-4	chr4	123305859	123306059	+	717.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17720.0	NM_022033	64059.0	Mm.270287	NM_022033	ENSMUSG00000076436	Oxct2a	Oxct|Oxct2|Scot|Scot-t1	3-oxoacid CoA transferase 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122566838-4	chr8	122566733	122566933	+	885.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1182.0	NM_026014	67177.0	Mm.21873	NM_026014	ENSMUSG00000006585	Cdt1	2610318F11Rik|AW545653|C76791|Ris2	chromatin licensing and DNA replication factor 1	protein-coding	1.90778925728645	2.84353574378376	1.91744019606086	2.12335596383055	2.31747159373695	2.39171018101351	1.59518200244944	1.56368025235612	-0.654386435318937	0.493085705454909	0.935679785535167
Merged-chr11-121226280-2	chr11	121226180	121226380	+	555.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252550, intron 3 of 5)	intron (NM_001252550, intron 3 of 5)	2660.0	NM_001254735	217370.0	Mm.27182	NM_144832	ENSMUSG00000039294	BC017643	-	cDNA sequence BC017643	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88464604-4	chr3	88464511	88464711	+	962.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-3429.0	NM_001163489	20351.0	Mm.439752	NM_013658	ENSMUSG00000028064	Sema4a	AI132332|SemB|Semab	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-158133246-4	chr2	158133144	158133344	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009373, intron 4 of 12)	intron (NM_009373, intron 4 of 12)	13148.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139150881-2	chr5	139150781	139150981	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359097)	promoter-TSS (NM_001359097)	-178.0	NM_001359101	19085.0	Mm.306163	NM_008923	ENSMUSG00000025855	Prkar1b	AI385716|RIbeta	protein kinase, cAMP dependent regulatory, type I beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126500943-2	chr7	126500843	126501043	+	671.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361487, intron 4 of 21)	intron (NM_001361487, intron 4 of 21)	1482.0	NM_001347658	233871.0	Mm.231450	NM_183020	ENSMUSG00000032637	Atxn2l	A2D|A2LG|A2RP|A2lp|Atxnl2	ataxin 2-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125451695-1	chr6	125451595	125451795	+	728.0	f1_balb.idr	Intergenic	ORR1A2|LTR|ERVL-MaLR	43065.0	NM_007657	12527.0	Mm.210676	NM_007657	ENSMUSG00000030342	Cd9	Tspan29	CD9 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-16502107-4	chr5	16501993	16502193	+	987.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51402.0	NM_001289460	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-82236751-3	chr15	82236656	82236856	+	813.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178269, intron 4 of 4)	intron (NM_178269, intron 4 of 4)	7580.0	NM_001080158	66570.0	Mm.23596	NM_025639	ENSMUSG00000068101	Cenpm	2610019I03Rik|AI853711|Pane1	centromere protein M	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-81234369-1	chr7	81234269	81234469	+	653.0	f0_balb.idr	intron (NM_008803, intron 1 of 21)	intron (NM_008803, intron 1 of 21)	20565.0	NM_008803	18584.0	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167885769-4	chr2	167885688	167885888	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46539.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-94838293-3	chr13	94838193	94838393	+	928.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009321, intron 3 of 3)	intron (NM_009321, intron 3 of 3)	-37334.0	NM_011021	18420.0	Mm.42051	NM_011021	ENSMUSG00000021685	Otp	-	orthopedia homeobox	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117829150-2	chr10	117829050	117829250	+	947.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_024457, intron 1 of 7)	intron (NM_024457, intron 1 of 7)	16824.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124579097-4	chr5	124579019	124579219	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181410)	promoter-TSS (NM_181410)	12.0	NM_145371	209354.0	Mm.28839	NM_145371	ENSMUSG00000029388	Eif2b1	D5Ertd406e|EIF2BA	eukaryotic translation initiation factor 2B, subunit 1 (alpha)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5941538-4	chr17	5941397	5941597	+	951.658325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001113353, exon 1 of 27)	exon (NM_001113353, exon 1 of 27)	217.0	NM_001113352	20975.0	Mm.236068	NM_011523	ENSMUSG00000023805	Synj2	AI481647|SJ2|mKIAA0348	synaptojanin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-25597580-4	chr8	25597487	25597687	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173012)	promoter-TSS (NM_173012)	-100.0	NM_173012	270035.0	Mm.268349	NM_173012	ENSMUSG00000037363	Letm2	6030453H13|D030041N04Rik	leucine zipper-EF-hand containing transmembrane protein 2	protein-coding	3.59536539068478	4.14496809929047	3.74481625681929	3.78270490844633	3.55808832115886	3.97334022856987	3.52408206597256	4.24276590890095	0.045404751255198	0.924635649413178	0.998431161219273
Merged-chr8-122890555-2	chr8	122890480	122890680	+	978.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_037865, exon 10 of 14)	non-coding (NR_037865, exon 10 of 14)	42206.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	3.04050716960793	2.8307508861811	2.97677054526521	1.26492556514667	1.83760978934111	2.39531975362988	2.43835829079919	1.27071933827803	-1.3153903579084	0.177705325158026	0.647898414987956
Merged-chr17-67352212-2	chr17	67352112	67352312	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	2247.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-67958240-4	chr7	67958144	67958344	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010513, intron 1 of 20)	intron (NM_010513, intron 1 of 20)	5987.0	NM_010513	16001.0	Mm.275742	NM_010513	ENSMUSG00000005533	Igf1r	A330103N21Rik|CD221|D930020L01|IGF-1R|hyft	insulin-like growth factor I receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83535908-3	chr11	83535881	83536081	+	928.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5463.0	NM_013653	20304.0	Mm.284248	NM_013653	ENSMUSG00000035042	Ccl5	MuRantes|RANTES|SISd|Scya5|TCP228	chemokine (C-C motif) ligand 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-116893982-3	chr10	116893882	116894082	+	911.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033333, intron 1 of 24)	intron (NM_001033333, intron 1 of 24)	2897.0	NM_001033333	237558.0	Mm.336386	NM_001033333	ENSMUSG00000034057	Myrfl	Gm239	myelin regulatory factor-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-59977610-4	chr7	59977515	59977715	+	881.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_146211, intron 17 of 171)	(A)n|Simple_repeat|Simple_repeat	1241.0	NR_028529	100217429.0		NR_028529		Snord64	MBII-13	small nucleolar RNA, C/D box 64	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-97297955-4	chr3	97297855	97298055	+	846.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70591.0	NM_029933	77578.0	Mm.226175	NM_029933	ENSMUSG00000038256	Bcl9	2610202E01Rik|8030475K17Rik|A330041G23Rik|Gm130	B cell CLL/lymphoma 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-25675227-3	chr15	25675122	25675322	+	798.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019472, intron 2 of 40)	MTE2b|LTR|ERVL-MaLR	52672.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-43411610-4	chr11	43411523	43411723	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14358.0	NM_013917	30939.0	Mm.6856	NM_013917	ENSMUSG00000020415	Pttg1	AW555095|C87862|Pttg|Pttg3	pituitary tumor-transforming gene 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10636047-2	chr19	10635920	10636120	+	717.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_153778, intron 1 of 19)	intron (NR_153778, intron 1 of 19)	1787.0	NR_153778	71768.0	Mm.169261	NM_027913	ENSMUSG00000043789	Vwce	1300015B04Rik	von Willebrand factor C and EGF domains	protein-coding	-0.824871006521664	-0.607962970139586	-0.817648053668354	-0.820359578628137	-0.82419911099288	-0.810687265017111	-0.816873753123866	-0.0575789645474715	2.28709328693755	0.437104918743658	1
Merged-chr4-133236832-1	chr4	133236732	133236932	+	856.3333130000001	f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-3986.0	NM_016693	53608.0	Mm.36640	NM_016693	ENSMUSG00000028862	Map3k6	Ask2|MAPKKK6|MEKK6	mitogen-activated protein kinase kinase kinase 6	protein-coding	0.212374709913698	-0.145521994088444	0.606763527739463	0.00937094827977747	-0.0139346208397916	-0.144433616241892	-0.149284181407254	-0.15342011701991	-2.97585972111998	0.176671220892944	1
Merged-chr7-43512162-4	chr7	43512022	43512222	+	915.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6184.0	NM_028737	74054.0	Mm.195732	NM_028737	ENSMUSG00000013353	4931406B18Rik	4930538L19Rik	RIKEN cDNA 4931406B18 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-113664621-4	chr9	113664537	113664737	+	984.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164678, intron 12 of 17)	intron (NM_001164678, intron 12 of 17)	43622.0	NM_001164678	18571.0	Mm.29816	NM_011052	ENSMUSG00000032504	Pdcd6ip	AI480591|AW544830|Aip1|Alix|C76364|Eig2|mKIAA1375	programmed cell death 6 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118249916-2	chr11	118249816	118250016	+	732.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1324.0	NM_011180	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-123064220-1	chr8	123064120	123064320	+	672.0	f1_c57bl6.idr	Intergenic	Intergenic	-1288.0	NM_153176	234847.0	Mm.292075	NM_153176	ENSMUSG00000000738	Spg7	AI452278|AU015315|Cmar|PGN	SPG7, paraplegin matrix AAA peptidase subunit	protein-coding	0.343858805418782	1.03992946294862	0.355666783215278	0.35120710335452	0.344947501833556	0.362800301276001	1.14750470115333	0.762122379293539	0.855833172840504	0.669351692543361	1
Merged-chr6-17670396-1	chr6	17670296	17670496	+	545.0	f1_balb.idr	Intergenic	Intergenic	-23598.0	NM_001289626	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30562347-2	chr7	30562247	30562447	+	651.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_170760)	promoter-TSS (NM_170760)	837.0	NM_025498	66340.0	Mm.86557	NM_025498	ENSMUSG00000036835	Psenen	1700023M09Rik|Pen-2	presenilin enhancer gamma secretase subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95876827-2	chr3	95876730	95876930	+	606.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_040446, intron 1 of 3)	B1_Mus2|SINE|Alu	5308.0	NR_040446	100042889.0	Mm.440109	NR_040446	ENSMUSG00000080727	C920021L13Rik	-	RIKEN cDNA C920021L13 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-34148681-2	chr10	34148581	34148781	+	721.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3A|LINE|L1	-20709.0	NM_175449	215900.0	Mm.34479	NM_175449	ENSMUSG00000046031	Fam26f	A630077B13Rik|Calhm6	family with sequence similarity 26, member F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-128180272-3	chr7	128180147	128180347	+	920.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029872, intron 5 of 30)	intron (NM_001029872, intron 5 of 30)	6301.0	NM_001029872	381924.0	Mm.334257	NM_001029872	ENSMUSG00000070369	Itgad	Cd11d	integrin, alpha D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-28594738-2	chr16	28594638	28594838	+	661.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010199, intron 2 of 5)	intron (NM_010199, intron 2 of 5)	5305.0	NR_030463	751543.0		NR_030463	ENSMUSG00000076064	Mir690	Mirn690|mir-690|mmu-mir-690	microRNA 690	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-59786868-4	chr4	59786773	59786973	+	806.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3018.0	NM_001013577	66209.0	Mm.51988	NM_001013577	ENSMUSG00000038544	Inip	1110054O05Rik|2610312O17Rik|AA399876|Ssbip1	INTS3 and NABP interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-26697801-4	chr8	26697696	26697896	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	126627.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	6.37368789545742	6.66823260976285	6.19997766756759	6.55193379180502	6.32510746015966	6.67494998071824	6.23835736708323	6.56404209668906	0.00139051811800031	0.994633724531566	0.998431161219273
Merged-chr6-122863069-4	chr6	122862969	122863169	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-6912.0	NM_009779	12267.0	Mm.2408	NM_009779	ENSMUSG00000040552	C3ar1	AZ3B|C3AR|HNFAG09	complement component 3a receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-105496387-4	chr5	105496290	105496490	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23081.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	0.146156452350443	0.198615305749571	1.7408056753133	0.1690151896602	0.149642453623502	0.202231669855027	1.76195514810053	0.171345487955546	0.0413945296707417	0.989933525016076	0.998431161219273
Merged-chr9-70943209-2	chr9	70943109	70943309	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001324472, intron 1 of 9)	MTEa|LTR|ERVL-MaLR	-8401.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-28751801-4	chr12	28751636	28751836	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_201357)	promoter-TSS (NM_201357)	-92.0	NM_201357	380752.0	Mm.273724	NM_201357	ENSMUSG00000036613	Eipr1	D12Ertd604e|Tssc1	EARP complex and GARP complex interacting protein 1	protein-coding	7.15309617236732	6.54718886493595	7.20320239409835	6.44992762602522	7.22945256926048	7.47058922304866	7.04203081904573	7.55681073751874	0.478236407810565	0.0188614596390864	0.172572287302815
Merged-chr6-108783700-4	chr6	108783584	108783784	+	994.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026011, intron 1 of 6)	CpG	625.0	NM_026011	67166.0	Mm.271178	NM_026011	ENSMUSG00000030105	Arl8b	2610313E07Rik|3100002J04Rik|Arl10c|gie1	ADP-ribosylation factor-like 8B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-97767724-2	chr7	97767624	97767824	+	574.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-20817.0	NM_001357365	18479.0	Mm.260227	NM_011035	ENSMUSG00000030774	Pak1	AW045634|PAK-1|Paka	p21 (RAC1) activated kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-100671581-3	chr5	100671484	100671684	+	856.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027978, intron 1 of 6)	intron (NM_027978, intron 1 of 6)	2672.0	NM_027978	71883.0	Mm.260661	NM_027978	ENSMUSG00000029319	Coq2	2310002F18Rik|PHB:PPT	coenzyme Q2 4-hydroxybenzoate polyprenyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-66646481-3	chr9	66646376	66646576	+	736.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53361.0	NM_001302116	235441.0	Mm.32465	NM_144937	ENSMUSG00000032376	Usp3	AA409661|BC017156	ubiquitin specific peptidase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116111481-2	chr11	116111381	116111581	+	857.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1246.0	NM_172570	217333.0	Mm.347770	NM_172570	ENSMUSG00000020773	Trim47	2210023F24Rik	tripartite motif-containing 47	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-184808366-3	chr1	184808273	184808473	+	951.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290273, intron 1 of 6)	intron (NM_001290273, intron 1 of 6)	2927.0	NM_001290273	66112.0	Mm.272457	NM_001081361	ENSMUSG00000026621	Marc1	1300013F15Rik|Mosc1	mitochondrial amidoxime reducing component 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-38029412-3	chr7	38029326	38029526	+	912.033325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-9874.0	NM_011274	19777.0	Mm.387220	NM_011274	ENSMUSG00000030421	Uri1	C80913|NNX3|Rmp	URI1, prefoldin-like chaperone	protein-coding	2.81229101613119	2.75257265366722	3.17431569854223	3.8934430751197	3.73565190013543	3.97469187016486	3.71738739864039	3.46016565049773	0.739341455065794	0.190277723366766	0.669094995590403
Merged-chr7-105628812-4	chr7	105628704	105628904	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018880, intron 1 of 11)	intron (NM_018880, intron 1 of 11)	4767.0	NM_018880	55992.0	Mm.29290	NM_018880	ENSMUSG00000036989	Trim3	BERP1|HAC1|Rnf22	tripartite motif-containing 3	protein-coding	3.69030454382273	3.43566078781414	4.50750720122087	4.49305803649767	1.30522242297524	2.36592653332775	2.77644804513211	1.40678868016129	-3.37706183157341	4.92866851586125e-06	0.000251278320906388
Merged-chr16-94604525-2	chr16	94604425	94604625	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113389, intron 1 of 11)	intron (NM_001113389, intron 1 of 11)	-6894.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-78173835-2	chr10	78173735	78173935	+	851.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_029546, exon 18 of 21)	exon (NM_029546, exon 18 of 21)	-4067.0	NM_138601	28295.0	Mm.268691	NM_138601	ENSMUSG00000053329	D10Jhu81e	C21orf33|ES1	DNA segment, Chr 10, Johns Hopkins University 81 expressed	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-63092148-4	chr9	63092095	63092295	+	903.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54785.0	NM_172446	207667.0	Mm.36349	NM_172446	ENSMUSG00000022245	Skor1	AV273001|C230094B15Rik|Corl1|Lbxcor1	SKI family transcriptional corepressor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-33497491-4	chr4	33497376	33497576	+	909.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305273, intron 14 of 15)	L1M3|LINE|L1	59395.0	NR_106198	102465904.0		NR_106198	ENSMUSG00000098310	Mir8118	Gm27954|mmu-mir-8118	microRNA 8118	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-153543181-3	chr1	153543079	153543279	+	844.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028749, intron 2 of 11)	intron (NM_028749, intron 2 of 11)	6535.0	NM_028749	74091.0	Mm.24887	NM_028749	ENSMUSG00000042684	Npl	0610033B02Rik	N-acetylneuraminate pyruvate lyase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-54110827-2	chr6	54110726	54110926	+	589.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_001163640, intron 1 of 12)	MIR|SINE|MIR	70894.0	NM_001163640	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	0.326881238918297	0.545487721885197	0.203057544400705	0.706039047654979	0.450692289724363	0.209885409353056	0.204284585055337	0.712773385900594	-0.311680081220412	0.86805715693264	1
Merged-chr15-91240477-1	chr15	91240377	91240577	+	560.0	f0_balb.idr	Intergenic	Intergenic	-48470.0	NM_001358967	26874.0	Mm.295456	NM_011994	ENSMUSG00000055782	Abcd2	ABC39|ALDL1|ALDR|ALDRP	ATP-binding cassette, sub-family D (ALD), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-64806485-4	chr9	64806427	64806627	+	743.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4484.0	NM_001162917	102442.0	Mm.222473	NM_176935	ENSMUSG00000053641	Dennd4a	AI115600|AI851943|F730015K02Rik	DENN/MADD domain containing 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-167342029-4	chr1	167341908	167342108	+	943.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7983.0	NM_019993	56752.0	Mm.292539	NM_019993	ENSMUSG00000026687	Aldh9a1	AA139417|Abaldh|ESTM40|TMABA-DH|Tmabadh	aldehyde dehydrogenase 9, subfamily A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-72317103-1	chr1	72317003	72317203	+	553.0	f0_balb.idr	intron (NM_001357519, intron 5 of 20)	intron (NM_001357519, intron 5 of 20)	9682.0	NM_001357519	22596.0	Mm.246952	NM_009533	ENSMUSG00000026187	Xrcc5	AI314015|CTC85|CTCBF|Ku80|Ku86	X-ray repair complementing defective repair in Chinese hamster cells 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-125563346-1	chr7	125563246	125563446	+	547.0	f1_balb.idr	intron (NM_001008700, intron 1 of 10)	intron (NM_001008700, intron 1 of 10)	11064.0	NM_001008700	16190.0	Mm.233802	NM_010557	ENSMUSG00000030748	Il4ra	CD124|Il4r	interleukin 4 receptor, alpha	protein-coding	0.394304765335076	0.424467592051784	1.26252039550675	1.20949851211518	0.56576498548671	0.426649288877887	0.416877573130218	1.12250797319747	-1.06556325776692	0.552459827997876	1
Merged-chr10-8758649-1	chr10	8758549	8758749	+	627.0	f0_balb.idr	intron (NM_175155, intron 8 of 19)	intron (NM_175155, intron 8 of 19)	127421.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0.658063317453823	1.15131410785971	0.869410472759238	0.385325412771065	0.532254229148075	0.401521049273231	0.999151683228234	0.386424874852718	-1.04578761325222	0.544859118995601	1
Merged-chr2-94265691-4	chr2	94265583	94265783	+	995.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4284.0	NR_030431	735259.0		NR_030431	ENSMUSG00000076335	Mir670	Mirn670|mir-670|mmu-mir-670	microRNA 670	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-28526199-2	chr2	28526099	28526299	+	549.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009058, intron 1 of 17)	intron (NM_009058, intron 1 of 17)	-7265.0	NM_001145835	19730.0	Mm.5236	NM_009058	ENSMUSG00000026821	Ralgds	Gnds|Rgds|mKIAA1308	ral guanine nucleotide dissociation stimulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-148490768-4	chr2	148490672	148490872	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47237.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124532725-3	chr5	124532612	124532812	+	911.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1321.0	NM_021430	75695.0	Mm.41180	NM_021430	ENSMUSG00000029392	Rilpl1	2900002H16Rik|6330559I19Rik|GOSPEL	Rab interacting lysosomal protein-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-31133855-4	chr3	31133757	31133957	+	951.1083369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-16063.0	NM_008770	18417.0	Mm.4425	NM_008770	ENSMUSG00000037625	Cldn11	Claudin-11|Claudin11|Osp|Otm	claudin 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-34780677-7	chr6	34780512	34780712	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001289657, exon 1 of 19)	5' UTR (NM_001289657, exon 1 of 19)	180.0	NM_001289656	76223.0	Mm.150047	NM_178630	ENSMUSG00000038836	Agbl3	2900053G10Rik|4930431N21Rik|6530406M24Rik|CCP3	ATP/GTP binding protein-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-53496427-3	chr6	53496308	53496508	+	877.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001327821, intron 5 of 10)	intron (NM_001327821, intron 5 of 10)	-76966.0	NM_172728	231991.0	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83654861-3	chr6	83654806	83655006	+	922.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016751, intron 2 of 6)	intron (NM_016751, intron 2 of 6)	1210.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	2.09326855076987	1.14509820078378	1.12204659228787	2.21233368434738	1.59290810061513	1.9328482019617	1.72386342947818	2.30699509167014	0.434638256764384	0.700799148034931	0.998431161219273
Merged-chr8-124837119-3	chr8	124837069	124837269	+	769.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25860.0	NM_025615	66523.0	Mm.436864	NM_025615	ENSMUSG00000031984	2810004N23Rik	3110004G14Rik|Ayu21-55|Gt(pU21)55Imeg|GtAyu21-55	RIKEN cDNA 2810004N23 gene	protein-coding	1.74526439270752	1.18383710756737	1.15981559384592	2.25512483371871	2.06827281740825	2.33068582192862	2.03431853124414	1.84864294596924	1.0883036230403	0.31607113600101	0.818934371145261
Merged-chr3-114323851-1	chr3	114323751	114323951	+	586.0	f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	293311.0	NM_007729	12814.0	Mm.209715	NM_007729	ENSMUSG00000027966	Col11a1	C530001D20Rik|cho	collagen, type XI, alpha 1	protein-coding	3.03415922512746	2.40858336963643	3.34427398419469	2.62801628193701	2.60958142231587	1.55360013068105	2.72579485967082	2.40932801568241	-0.994205692063044	0.207446501411499	0.695624126309436
Merged-chr16-20734024-2	chr16	20733924	20734124	+	576.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_009893, exon 3 of 23)	exon (NM_009893, exon 3 of 23)	487.0	NM_009379	21832.0	Mm.3943	NM_009379	ENSMUSG00000022847	Thpo	Mgdf|Ml|Mpllg|Tpo	thrombopoietin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-90669677-3	chr15	90669562	90669762	+	922.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033851, intron 1 of 3)	intron (NM_001033851, intron 1 of 3)	9726.0	NM_025815	66871.0	Mm.290991	NM_025815	ENSMUSG00000052560	Cpne8	1200003E11Rik|1500031E20Rik	copine VIII	protein-coding	2.67065035815204	2.40458463036752	2.04750692022853	1.99377418835181	2.69218654204135	1.94854305786966	2.06251694089056	2.74985921674474	0.247607253862903	0.768605868404063	0.998431161219273
Merged-chr13-33068396-3	chr13	33068351	33068551	+	803.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-15652.0	NM_173052	282663.0	Mm.314490	NM_173052	ENSMUSG00000051029	Serpinb1b	6330533H24Rik|EIB|Serpin1b1|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 1b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-26751915-2	chr10	26751815	26752015	+	586.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1A|DNA|hAT-Charlie	-20597.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-21937500-4	chr10	21937418	21937618	+	764.612488	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161845, intron 2 of 13)	intron (NM_001161845, intron 2 of 13)	-41154.0	NM_001161847	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	4.35975565327329	3.30324547844686	3.18833885347624	3.86808792743331	3.5452738802288	1.72421515004857	2.99539205533959	2.63773901803654	-1.36781590517924	0.0417374983544005	0.292503799799122
Merged-chr7-19921095-4	chr7	19920992	19921192	+	983.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027514)	promoter-TSS (NM_027514)	51.0	NM_027514	52118.0	Mm.227506	NM_027514	ENSMUSG00000040511	Pvr	3830421F03Rik|CD155|D7Ertd458e|HVED|PVS|Taa1|Tage4|mE4|necl-5	poliovirus receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-99483189-2	chr4	99483089	99483289	+	741.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TATATG)n|Simple_repeat|Simple_repeat	-173110.0	NM_010425	15221.0	Mm.4758	NM_010425	ENSMUSG00000067261	Foxd3	CWH3|Genesis|Hfh2	forkhead box D3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-78224231-2	chr12	78224131	78224331	+	624.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger7|DNA|TcMar-Tigger	-2424.0	NM_172952	268566.0	Mm.341742	NM_145965	ENSMUSG00000047454	Gphn	5730552E08Rik|AI662856|BC027112|C230040D23|GPH|GPHRYN|geph	gephyrin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-114822015-2	chr4	114821958	114822158	+	864.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_033617, intron 1 of 3)	intron (NR_033617, intron 1 of 3)	338.0	NR_033617	433746.0	Mm.388908	NR_033617	ENSMUSG00000055198	Gm12830	-	predicted gene 12830	ncRNA	1.53940515351077	1.85614498757714	1.54096626290626	2.01185634564397	1.55226418515717	1.01919376961959	1.0020459632934	1.63239867365858	-1.41807483048099	0.238447699761215	0.734944896832094
Merged-chr6-73711435-2	chr6	73711335	73711535	+	575.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-240414.0	NR_108032	73408.0	Mm.233629	NR_108032	ENSMUSG00000107408	1700065L07Rik	-	RIKEN cDNA 1700065L07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-61861591-4	chr14	61861499	61861699	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-179226.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-154940769-2	chr4	154940671	154940871	+	969.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB7|LINE|L1	-12694.0	NM_178931	230979.0	Mm.215147	NM_178931	ENSMUSG00000042333	Tnfrsf14	Atar|HveA|Hvem|Tnfrs14	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	protein-coding	1.24916765511024	1.29522455306422	0.761913088753204	1.32386075279208	1.52037245720876	0.775240044263711	0.957602542695383	1.21636784059397	-0.0885550574002194	0.949703620065948	0.998431161219273
Merged-chr18-60788625-2	chr18	60788535	60788735	+	829.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	14039.0	NM_020600	20044.0	Mm.43778	NM_020600	ENSMUSG00000024608	Rps14	2600014J02Rik|AL023078	ribosomal protein S14	protein-coding	0.495970672172638	1.35169855713566	0.550649811391632	0.820410701771188	0.333896164155147	0.91604030389036	0.353076884151168	0.345236921425339	-1.90745859438441	0.27592326023796	1
Merged-chr6-119417552-4	chr6	119417455	119417655	+	754.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_197985)	promoter-TSS (NM_197985)	-27.0	NM_197985	68465.0	Mm.291826	NM_197985	ENSMUSG00000030168	Adipor2	1110001I14Rik|ADCR2|AI115388|AW554121|D6Ucla1e|Paqr2	adiponectin receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27612957-1	chr17	27612857	27613057	+	631.5	f1_c57bl6.idr	intron (NM_019837, intron 1 of 4)	intron (NM_019837, intron 1 of 4)	10007.0	NM_001291046	56409.0	Mm.144699	NM_019837	ENSMUSG00000024213	Nudt3	1110011B09Rik|AA960325|Dipp|Dipp1	nudix (nucleotide diphosphate linked moiety X)-type motif 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-23666371-1	chr11	23666271	23666471	+	1000.0	f0_c57.idr	promoter-TSS (NM_023651)	promoter-TSS (NM_023651)	395.0	NM_028304	74467.0	Mm.29536	NM_028304	ENSMUSG00000020280	Pus10	2810013G11Rik|4933435A13Rik|AU014648|C77560|Ccdc139	pseudouridylate synthase 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-96965327-2	chr11	96965227	96965427	+	802.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_003293)	TTS (NR_003293)	12361.0	NM_030220	78912.0	Mm.491183	NM_030220	ENSMUSG00000018678	Sp2	4930480I16Rik|mKIAA0048	Sp2 transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-79660607-2	chr11	79660507	79660707	+	795.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175543, intron 3 of 14)	CpG	14479.0	NR_045898	72218.0	Mm.443271	NR_045898	ENSMUSG00000086569	Rab11fip4os2	1700020F10Rik|4930542H20Rik|Rab11fib4os2	RAB11 family interacting protein 4 (class II), opposite strand 2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-4080040-4	chr10	4079930	4080130	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170785, intron 20 of 27)	intron (NM_001170785, intron 20 of 27)	106955.0	NM_172308	270685.0	Mm.184752	NM_172308	ENSMUSG00000040675	Mthfd1l	2410004L15Rik|AI647056|Fthfsdc1	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100509494-2	chr7	100509394	100509594	+	779.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_153527, intron 3 of 7)	B1_Mus1|SINE|Alu	5321.0	NM_153527	69387.0	Mm.278554	NM_153527	ENSMUSG00000030708	Dnajb13	1700014P03Rik|Tsarg	DnaJ heat shock protein family (Hsp40) member B13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-34664131-3	chr3	34663986	34664186	+	697.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015580, intron 4 of 4)	CpG	14091.0	NM_011443	20674.0	Mm.65396	NM_011443	ENSMUSG00000074637	Sox2	Sox-2|lcc|ysb	SRY (sex determining region Y)-box 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-68446762-2	chr11	68446662	68446862	+	748.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177320, intron 1 of 18)	L1M5|LINE|L1	14637.0	NM_177320	320207.0	Mm.244960	NM_177320	ENSMUSG00000020901	Pik3r5	AV230647|F730038I15Rik|Foap2|p101	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-142091843-2	chr4	142091743	142091943	+	554.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-7539.0	NM_145402	214359.0	Mm.27587	NM_145402	ENSMUSG00000040616	Tmem51	BC003277	transmembrane protein 51	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-67464799-4	chr7	67464698	67464898	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-91940.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	1.94045740902162	2.32456141500684	1.30396815406696	2.49843396079438	2.08149822027807	2.34228822454511	1.78863431139963	3.13409433521024	0.791744571904052	0.401159597717695	0.886392790684513
Merged-chr16-33568764-4	chr16	33568638	33568838	+	890.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083902, intron 4 of 11)	intron (NM_001083902, intron 4 of 11)	50143.0	NM_001083902	171286.0	Mm.35253	NM_134251	ENSMUSG00000035506	Slc12a8	CCC9|E330020C02Rik	solute carrier family 12 (potassium/chloride transporters), member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-35666992-2	chr13	35666892	35667092	+	831.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009881, intron 1 of 9)	intron (NM_009881, intron 1 of 9)	7130.0	NM_009881	12593.0	Mm.29002	NM_009881	ENSMUSG00000059288	Cdyl	AI325931	chromodomain protein, Y chromosome-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-107101313-2	chr8	107101213	107101413	+	732.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A3-int|LTR|ERVL-MaLR	-4768.0	NR_104410	21750.0	Mm.6402	NM_009353	ENSMUSG00000031921	Terf2	TRF2	telomeric repeat binding factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45592002-4	chr7	45591894	45592094	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR49|LTR|ERVK	-16818.0	NR_038165	71661.0	Mm.439894	NR_038165	ENSMUSG00000109644	0610005C13Rik	AI182092	RIKEN cDNA 0610005C13 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98022719-4	chr11	98022627	98022827	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031173)	promoter-TSS (NM_031173)	-100.0	NM_001282978	12295.0	Mm.41252	NM_031173	ENSMUSG00000020882	Cacnb1	CAB1|Cchb1|Cchlb1	calcium channel, voltage-dependent, beta 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-82755146-3	chr8	82755013	82755213	+	870.3666380000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MMERVK10D3_LTR|LTR|ERVK	19013.0	NM_145600	30932.0	Mm.269248	NM_145600	ENSMUSG00000031711	Zfp330	BC008086|Noa36|Znf330	zinc finger protein 330	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90505970-3	chr2	90505933	90506133	+	848.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	-26859.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-112278281-2	chr10	112278181	112278381	+	696.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359753, intron 2 of 4)	intron (NM_001359753, intron 2 of 4)	7008.0	NM_001359753	268345.0	Mm.336242	NM_001025581	ENSMUSG00000035681	Kcnc2	AW047325|B230117I07|KShIIIA|Kv3.2	potassium voltage gated channel, Shaw-related subfamily, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-9133847-4	chr4	9133747	9133947	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-135446.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-44279813-2	chr12	44279713	44279913	+	616.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026164, intron 1 of 9)	intron (NM_026164, intron 1 of 9)	10659.0	NM_026164	67452.0	Mm.54126	NM_026164	ENSMUSG00000036257	Pnpla8	1200006O19Rik|AI467579|Ipla2(gamma)	patatin-like phospholipase domain containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-132340511-2	chr1	132340411	132340611	+	982.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	24386.0	NM_028778	74137.0	Mm.100666	NM_028778	ENSMUSG00000009772	Nuak2	1200013B22Rik|Omphk2|Snark|mKIAA0537	NUAK family, SNF1-like kinase, 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91868688-2	chr16	91868588	91868788	+	804.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110275, intron 27 of 28)	intron (NM_001110275, intron 27 of 28)	62942.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-176862387-3	chr1	176862299	176862499	+	824.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357390, intron 9 of 18)	intron (NM_001357390, intron 9 of 18)	-26266.0	NR_037996	15365.0	Mm.441435	NR_037996		Hmga2-ps1	EG666235|Gm7996|Hmgic-ps1|[y]i-c	high mobility group AT-hook 2, pseudogene 1	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-51123188-3	chr6	51123084	51123284	+	776.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	146726.0	NR_029719	387166.0		NR_029719	ENSMUSG00000065505	Mir148a	Mirn148|Mirn148a|mir-148a	microRNA 148a	ncRNA	2.20636555009169	2.2536508025521	2.9007209265961	2.81720352752242	1.15855460236822	1.54580709537114	1.89646913115377	1.66132452198905	-2.59401339243192	0.00805848406511458	0.0934732723787708
Merged-chr10-117836562-4	chr10	117836454	117836654	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024457, intron 1 of 7)	B3A|SINE|B2	9420.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64959232-4	chr5	64959093	64959293	+	956.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359180, intron 1 of 1)	intron (NM_001359180, intron 1 of 1)	903.0	NM_001359180	21899.0	Mm.42146	NM_011604	ENSMUSG00000051498	Tlr6	-	toll-like receptor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-82899116-3	chr10	82899022	82899222	+	980.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	32496.0	NM_025499	66341.0	Mm.443284	NM_025499	ENSMUSG00000109864	Eid3	1700027M21Rik|NS4EB	EP300 interacting inhibitor of differentiation 3	protein-coding	3.49273130202162	3.83216009285165	3.43459261948595	3.26099824678602	2.9495271106217	2.97016292395057	1.98377065136927	3.43108468383649	-0.95493304037872	0.128154396009921	0.560212452025882
Merged-chr12-16867419-1	chr12	16867319	16867519	+	970.0	f1_c57bl6.idr	Intergenic	Intergenic	-27559.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	-1.06997269762433	-1.30473905204845	-1.3145270772132	-1.32256725251374	-1.06385251204029	-1.30261794616352	-1.3123112828633	-1.32112806497905	0.0394047164033882	0.991001358494878	1
Merged-chr2-50517525-2	chr2	50517425	50517625	+	567.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	162500.0	NR_154590	102634280.0		NR_154590		Gm48908	-	predicted gene 48908	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-57726771-2	chr10	57726671	57726871	+	917.2999880000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_008863, intron 4 of 5)	RMER1A|Other|Other	-58152.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-122289061-4	chr7	122288950	122289150	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008855)	promoter-TSS (NM_008855)	-75.0	NM_001316672	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75455472-3	chr11	75455347	75455547	+	870.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138950)	promoter-TSS (NM_138950)	-730.0	NM_138950	192652.0	Mm.340378	NM_138950	ENSMUSG00000045374	Wdr81	BC054822|Gm883|mFLJ00182|nur5	WD repeat domain 81	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-116074065-3	chr6	116073975	116074175	+	817.349976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177412, intron 3 of 5)	intron (NM_177412, intron 3 of 5)	-79070.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-98260182-4	chr12	98260144	98260344	+	931.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008079)	promoter-TSS (NM_008079)	-785.0	NM_008079	14420.0	Mm.5120	NM_008079	ENSMUSG00000021003	Galc	2310068B06Rik|A930008M05Rik|AW212969|AW413532|Gacy|twi|twitcher	galactosylceramidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-47242609-4	chr13	47242521	47242721	+	939.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146042, intron 6 of 7)	intron (NM_146042, intron 6 of 7)	48618.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71285433-2	chr17	71285332	71285532	+	887.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357337, intron 2 of 7)	intron (NM_001357337, intron 2 of 7)	25579.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	2.36189643732326	2.24111152226421	2.16581241081913	2.56750796133481	1.62142065345404	2.25767150591807	1.54269459037391	1.69314511933888	-1.41825597947874	0.124396868910706	0.552368396864051
Merged-chr1-37427411-4	chr1	37427306	37427506	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198006, intron 2 of 2)	GA-rich|Low_complexity|Low_complexity	2697.0	NM_198006	76178.0	Mm.28085	NM_198006	ENSMUSG00000026112	Coa5	1700001A24Rik|6330578E17Rik|Pet191	cytochrome C oxidase assembly factor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-56610434-2	chr13	56610334	56610534	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_155548, intron 1 of 16)	intron (NR_155548, intron 1 of 16)	848.0	NR_155548	21810.0	Mm.14455	NM_009369	ENSMUSG00000035493	Tgfbi	68kDa|AI181842|AI747162|Beta-ig|big-h3	transforming growth factor, beta induced	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101417731-2	chr7	101417631	101417831	+	683.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3960.0	NM_001008548	207728.0	Mm.247564	NM_001008548	ENSMUSG00000030653	Pde2a	CGS-PDE|cGSPDE	phosphodiesterase 2A, cGMP-stimulated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-75600353-3	chr15	75600246	75600446	+	938.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3716.0	NM_026730	68453.0	Mm.46367	NM_026730	ENSMUSG00000022579	Gpihbp1	1110002J19Rik|GPI-HBP1	GPI-anchored HDL-binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-30766623-3	chr13	30766534	30766734	+	852.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_013674, exon 9 of 9)	3' UTR (NM_013674, exon 9 of 9)	17401.0	NM_013674	16364.0	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-12034216-2	chr5	12034116	12034316	+	654.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	116173.0	NM_001177510	545732.0	Mm.389066	NM_001177510	ENSMUSG00000067848	4933402N22Rik	-	RIKEN cDNA 4933402N22 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-118541053-4	chr2	118540953	118541153	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001331221, intron 3 of 3)	intron (NM_001331221, intron 3 of 3)	3534.0	NR_138603	171543.0	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	0.802484061416239	0.205899268025718	0.197935707810148	0.191739407075196	0.488377615048344	1.20567151790346	0.199698565896698	0.379626145145439	1.41463633045889	0.461904586117909	1
Merged-chr16-32837011-1	chr16	32836911	32837111	+	552.0	f0_balb.idr	intron (NM_172615, intron 8 of 18)	intron (NM_172615, intron 8 of 18)	-26565.0	NM_001256309	381043.0	Mm.303864	NM_001256309	ENSMUSG00000094430	Smbd1	Gm1743|Gm933	somatomedin B domain containing 1	protein-coding	-1.05877568042897	-1.03501312238488	-1.04817210678232	-1.05426068996071	-1.05810152525527	-1.03216151557194	-0.188696606725984	-1.05378786495764	3.16074139804981	0.330468818528456	1
Merged-chr17-56264224-4	chr17	56264137	56264337	+	929.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010192)	TTS (NM_010192)	7444.0	NM_010192	14154.0	Mm.290813	NM_010192	ENSMUSG00000043683	Fem1a	AW611390|Fem1aa	feminization 1 homolog a (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-154140810-2	chr4	154140710	154140910	+	991.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011642)	promoter-TSS (NM_011642)	-602.0	NM_011642	22062.0	Mm.78015	NM_011642	ENSMUSG00000029026	Trp73	TAp73|Tp73|deltaNp73|p73	transformation related protein 73	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78330171-3	chr15	78330075	78330275	+	774.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358854, intron 2 of 14)	intron (NM_001358854, intron 2 of 14)	4185.0	NM_007780	12983.0	Mm.235324	NM_007780	ENSMUSG00000071713	Csf2rb	AI848964|AIC2B|Bc|CDw131|Csf2rb1|Csfgmrb|Il3r|Il3rb|Il3rb1|Il5rb	colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-34047958-3	chr10	34047864	34048064	+	762.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162937, intron 1 of 6)	intron (NM_001162937, intron 1 of 6)	-3651.0	NM_001081165	270711.0	Mm.303077	NM_001081165	ENSMUSG00000039508	Fam26d	4732454E20Rik|AI586164|Calhm4|Gm643	family with sequence similarity 26, member D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-121803071-3	chr11	121802972	121803172	+	796.099976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27146.0	NM_029049	74675.0	Mm.61213	NM_029049	ENSMUSG00000039198	Ptchd3	4930451E13Rik|4933440L20Rik|RNDEu-3	patched domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127119366-2	chr10	127119266	127119466	+	938.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177614, intron 4 of 13)	intron (NM_177614, intron 4 of 13)	1794.0	NM_177614	216440.0	Mm.295246	NM_177614	ENSMUSG00000040462	Os9	4632413K17Rik|AU022351	amplified in osteosarcoma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3698865-2	chr19	3698765	3698965	+	597.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9428.0	NM_001358256	72056.0	Mm.23780	NM_028077	ENSMUSG00000035372	1810055G02Rik	AI256204	RIKEN cDNA 1810055G02 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-53765177-3	chr11	53765031	53765231	+	849.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-1477.0	NR_106131	102465772.0		NR_106131	ENSMUSG00000099153	Mir7671	Gm27802|mmu-mir-7671	microRNA 7671	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-136898027-5	chr4	136898023	136898223	+	970.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007572, intron 1 of 2)	(CCCTAA)n|Simple_repeat|Simple_repeat	721.0	NM_007572	12259.0	Mm.439957	NM_007572	ENSMUSG00000036887	C1qa	AI255395|C1q	complement component 1, q subcomponent, alpha polypeptide	protein-coding	3.04371940487261	2.9160406637053	2.34442640335822	2.53335147790095	1.87074407258993	2.71621981673713	2.36261522515603	3.1516318865624	-0.25186521917837	0.74342815254896	0.998431161219273
Merged-chr3-100974069-3	chr3	100973956	100974156	+	871.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4393.0	NM_001013026	74044.0	Mm.270961	NM_001013026	ENSMUSG00000033222	Ttf2	4632434F22Rik|8030447N19|AV218430	transcription termination factor, RNA polymerase II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99671956-2	chr15	99671856	99672056	+	702.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_009597, exon 2 of 12)	exon (NM_009597, exon 2 of 12)	1579.0	NM_009597	11419.0	Mm.440107	NM_009597	ENSMUSG00000023017	Asic1	AI843610|ASIC|ASIC1a|Accn2|B530003N02Rik|BNaC2	acid-sensing (proton-gated) ion channel 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-143820892-3	chr5	143820793	143820993	+	591.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50969.0	NM_013557	15467.0	Mm.389709	NM_013557	ENSMUSG00000029613	Eif2ak1	HCR|Hri	eukaryotic translation initiation factor 2 alpha kinase 1	protein-coding	1.72023187891502	1.05719126935923	2.08362134894336	1.23649866115087	1.92580088729755	1.8314144652735	2.10140506721263	1.02318308380919	0.553833221127077	0.644717556547732	0.983701068654072
Merged-chr17-8224868-2	chr17	8224768	8224968	+	932.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-11175.0	NM_001190333	12458.0	Mm.8007	NM_009835	ENSMUSG00000040899	Ccr6	CC-CKR-6|CCR-6|Cmkbr6|KY411	chemokine (C-C motif) receptor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-61678300-4	chr14	61678196	61678396	+	852.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028264, intron 1 of 6)	intron (NR_028264, intron 1 of 6)	4077.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-70883098-2	chr17	70882998	70883198	+	724.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22498.0	NR_035427	100316676.0		NR_035427	ENSMUSG00000080468	Mir1195	Mirn1195|mmu-mir-1195	microRNA 1195	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-127467973-3	chr6	127467895	127468095	+	640.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346512, intron 1 of 5)	intron (NM_001346512, intron 1 of 5)	14368.0	NM_001346512	101187.0	Mm.110818	NM_181402	ENSMUSG00000037997	Parp11	5330431N24Rik|AI851877|ARTD11|HIN1L|PARP-11	poly (ADP-ribose) polymerase family, member 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132946153-2	chr4	132946049	132946249	+	915.5	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-23598.0	NM_001163792	230789.0	Mm.11473	NM_145553	ENSMUSG00000028878	Fam76a	-	family with sequence similarity 76, member A	protein-coding	3.02367162276656	2.02748331267332	2.23880024483415	1.90977586882494	2.287249938877	1.86172859140952	1.97681903379552	2.06163725894398	-0.809495500256736	0.362166714705186	0.8580597646541
Merged-chr11-118312477-4	chr11	118312400	118312600	+	964.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011594, intron 3 of 4)	intron (NM_011594, intron 3 of 4)	-22256.0	NM_001033528	72344.0	Mm.232293	NM_001033528	ENSMUSG00000033909	Usp36	2700002L06Rik|mKIAA1453	ubiquitin specific peptidase 36	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-31084642-4	chr2	31084542	31084742	+	989.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355105, intron 4 of 15)	intron (NM_001355105, intron 4 of 15)	11858.0	NM_001177650	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-138130347-2	chr1	138130247	138130447	+	994.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001268286, intron 2 of 28)	intron (NM_001268286, intron 2 of 28)	44779.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44552240-2	chr7	44552140	44552340	+	927.833374	f1_balb.idr|f1_c57bl6.idr	exon (NM_001285517, exon 5 of 10)	exon (NM_001285517, exon 5 of 10)	1725.0	NM_009473	22260.0	Mm.968	NM_009473	ENSMUSG00000060601	Nr1h2	AI194859|LXR|LXRB|LXRBSV|LXRbeta|NER1|OR-1|RIP15|UR|Unr|Unr2	nuclear receptor subfamily 1, group H, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21526166-4	chr9	21526083	21526283	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_206536)	promoter-TSS (NM_206536)	6.0	NM_206536	382062.0	Mm.325205	NM_206536	ENSMUSG00000057191	AB124611	Gm1706	cDNA sequence AB124611	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-94517841-4	chr16	94517705	94517905	+	944.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007834, intron 1 of 7)	Lx5c|LINE|L1	8824.0	NM_007834	13185.0	Mm.7472	NM_007834	ENSMUSG00000022898	Dscr3	AW538125|Dcra	DSCR3 arrestin fold containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-3331616-2	chr8	3331516	3331716	+	664.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21799.0	NM_001033378	319493.0	Mm.234565	NM_001033378	ENSMUSG00000074497	A430078G23Rik	-	RIKEN cDNA A430078G23 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-111886157-1	chr13	111886057	111886257	+	739.5	f1_c57bl6.idr	Intergenic	Intergenic	18221.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45175755-2	chr7	45175655	45175855	+	600.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001195255)	TTS (NM_001195255)	2452.0	NR_106022	102465638.0		NR_106022	ENSMUSG00000106470	Mir7055	mmu-mir-7055	microRNA 7055	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-37972845-4	chr15	37972746	37972946	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001112721, intron 56 of 58)	intron (NM_001112721, intron 56 of 58)	-11791.0	NM_199476	382985.0	Mm.24738	NM_199476	ENSMUSG00000022292	Rrm2b	p53R2	ribonucleotide reductase M2 B (TP53 inducible)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-34906537-2	chr2	34906437	34906637	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_028716, exon 5 of 15)	exon (NM_028716, exon 5 of 15)	7439.0	NM_028716	74016.0	Mm.65691	NM_028716	ENSMUSG00000026873	Phf19	3110009G19Rik|3321402G02Rik	PHD finger protein 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-21012321-2	chr13	21012221	21012421	+	768.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_012054, intron 19 of 20)	intron (NM_012054, intron 19 of 20)	60978.0	NM_146535	258528.0	Mm.377554	NM_146535	ENSMUSG00000042869	Olfr1370	MOR256-14	olfactory receptor 1370	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-55474714-4	chr13	55474629	55474829	+	930.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177372, intron 12 of 13)	intron (NM_001177372, intron 12 of 13)	3047.0	NR_105909	102465569.0		NR_105909	ENSMUSG00000098341	Mir6944	Gm27710|mmu-mir-6944	microRNA 6944	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-77938034-2	chr10	77937934	77938134	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_138301, exon 13 of 34)	exon (NM_138301, exon 13 of 34)	31838.0	NM_138301	28240.0	Mm.276762	NM_138301	ENSMUSG00000009292	Trpm2	9830168K16Rik|C79133|LTRPC2|TRPC7|Trp7|Trrp7	transient receptor potential cation channel, subfamily M, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-33782351-1	chr5	33782251	33782451	+	1000.0	f0_balb.idr	intron (NM_019694, intron 1 of 13)	CpG	353.0	NM_019694	56384.0	Mm.260538	NM_019694	ENSMUSG00000005299	Letm1	-	leucine zipper-EF-hand containing transmembrane protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-110107750-4	chr5	110107637	110107837	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145147, intron 1 of 9)	CpG-11316	460.0	NM_145147	107999.0	Mm.86267	NM_145147	ENSMUSG00000033434	Gtpbp6	AV119224|Pgbpll|pgpl	GTP binding protein 6 (putative)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30891261-2	chr2	30891161	30891361	+	681.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_022415, exon 3 of 3)	3' UTR (NM_022415, exon 3 of 3)	12036.0	NM_022415	64292.0	Mm.28768	NM_022415	ENSMUSG00000050737	Ptges	2410099E23Rik|D2Ertd369e|Pges|mPGES|mPGES-1	prostaglandin E synthase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-91041795-4	chr1	91041696	91041896	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111312, intron 1 of 12)	intron (NM_001111312, intron 1 of 12)	-11648.0	NM_001111311	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-63257462-2	chr6	63257362	63257562	+	694.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008167, intron 1 of 15)	CpG	605.0	NM_008167	14804.0	Mm.439651	NM_008167	ENSMUSG00000071424	Grid2	B230104L07Rik|GluD2|GluRdelta2|Lc|Lc<J>|MMS10-AC|Ms10ac|cpr|ho|nmf408|tpr	glutamate receptor, ionotropic, delta 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166079043-2	chr2	166078943	166079143	+	623.041626	f1_balb.idr|f1_c57bl6.idr	exon (NM_028072, exon 17 of 21)	exon (NM_028072, exon 17 of 21)	76242.0	NM_001355619	72043.0	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	-0.507739799604991	-0.943394515960792	-0.952923139117248	-0.797897786589376	-0.957600481581578	-0.940902734549164	-0.952290037925597	-0.795360248546546	-1.76960168026137	0.54604153679779	1
Merged-chr1-134961838-1	chr1	134961738	134961938	+	606.0	f0_balb.idr	promoter-TSS (NM_001278115)	promoter-TSS (NM_001278115)	-727.0	NM_026024	67196.0	Mm.284587	NM_026024	ENSMUSG00000026429	Ube2t	2700084L22Rik|C80607	ubiquitin-conjugating enzyme E2T	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-161076447-4	chr1	161076293	161076493	+	971.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131030, intron 2 of 4)	B1F2|SINE|Alu	5626.0	NR_131029	70454.0	Mm.248212	NM_027429	ENSMUSG00000026708	Cenpl	2610300B10Rik|AW121806|AW550697|CENP-L	centromere protein L	protein-coding	4.89042927806497	4.51206659273211	4.42334377421022	4.51064825531364	4.41644309656153	5.26696017037982	5.36707631885309	5.01249721589225	0.5480718637681	0.125222134805412	0.554260393530007
Merged-chr11-120634021-3	chr11	120633892	120634092	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010756)	promoter-TSS (NM_010756)	-445.0	NM_010756	17134.0	Mm.268010	NM_010756	ENSMUSG00000051510	Mafg	AA545192|C630022N07Rik	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein G (avian)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-103941096-4	chr8	103941002	103941202	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-160523.0	NM_009868	12562.0	Mm.21767	NM_009868	ENSMUSG00000031871	Cdh5	7B4|AA408225|Cd144|VE-Cad|VECD|VEcad|Vec	cadherin 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-40557899-4	chr12	40557795	40557995	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	111842.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105356100-2	chr8	105356000	105356200	+	607.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081332, intron 5 of 15)	intron (NM_001081332, intron 5 of 15)	7842.0	NM_001081332	277973.0	Mm.334766	NM_001081332	ENSMUSG00000014786	Slc9a5	Gm696	solute carrier family 9 (sodium/hydrogen exchanger), member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-5503552-2	chr11	5503473	5503673	+	878.916626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-17068.0	NM_013842	22433.0	Mm.469937	NM_013842	ENSMUSG00000020484	Xbp1	D11Ertd39e|TREB-5|TREB5|XBP-1	X-box binding protein 1	protein-coding	1.13274098924965	1.31089863774414	0.617452090050495	0.79660794453614	0.596368632903931	1.54522351601997	0.619918819974803	1.21770492874071	0.321854835797034	0.837355920591312	0.998431161219273
Merged-chr2-27774798-2	chr2	27774698	27774898	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	64215.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-8735832-4	chr19	8735701	8735901	+	995.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134139)	promoter-TSS (NM_134139)	-38.0	NM_134139	107071.0	Mm.29627	NM_134139	ENSMUSG00000042729	Wdr74	5730436H21Rik|AA407588	WD repeat domain 74	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180844979-2	chr1	180844879	180845079	+	652.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-6172.0	NM_145943	208768.0	Mm.272625	NM_145943	ENSMUSG00000038806	Sde2	-	SDE2 telomere maintenance homolog (S. pombe)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-98280724-4	chr12	98280594	98280794	+	901.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12059.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-66040023-2	chr18	66039923	66040123	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37388.0	NM_001172062	70361.0	Mm.290857	NM_027400	ENSMUSG00000041891	Lman1	2610020P13Rik|AI326273|AU043785|C730041J05|ERGIC53|F5F8D|MCFD1|MR60|P58|gp58	lectin, mannose-binding, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89233624-4	chr3	89233515	89233715	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_183037)	TTS (NM_183037)	4559.0	NM_013605	17829.0	Mm.16193	NM_013605	ENSMUSG00000042784	Muc1	CD227|EMA|Muc-1	mucin 1, transmembrane	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-99928192-2	chr5	99928092	99928292	+	559.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	50746.0	NM_001077266	11991.0	Mm.150231	NM_007516	ENSMUSG00000000568	Hnrnpd	Auf1|Hnrpd	heterogeneous nuclear ribonucleoprotein D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-136132162-4	chr1	136132145	136132345	+	888.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039472, intron 1 of 34)	intron (NM_001039472, intron 1 of 34)	855.0	NR_153829	16565.0	Mm.276135	NM_019962	ENSMUSG00000041642	Kif21b	2610511N21Rik|mKIAA0449	kinesin family member 21B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59501672-4	chr15	59501557	59501757	+	980.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026746, intron 4 of 6)	intron (NM_026746, intron 4 of 6)	127459.0	NM_001164604	68501.0	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	3.33344320738475	2.58500448530098	3.17157174001165	3.16568342902287	3.23985321117463	2.88429452822174	3.00995646791127	2.28232619672971	-0.34691845667227	0.599585612326105	0.972577638553403
Merged-chr11-58008746-4	chr11	58008638	58008838	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028451)	promoter-TSS (NM_028451)	-326.0	NM_028451	73158.0	Mm.248843	NM_028451	ENSMUSG00000037331	Larp1	1810024J12Rik|3110040D16Rik|Larp|mKIAA0731	La ribonucleoprotein domain family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-37426199-4	chr2	37426098	37426298	+	949.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_146253, exon 2 of 2)	3' UTR (NM_146253, exon 2 of 2)	-3295.0	NM_001290642	319817.0	Mm.288785	NM_001100591	ENSMUSG00000075376	Rc3h2	2900024N03Rik|9430019J22Rik|D930043C02Rik|Mnab|Rnf164	ring finger and CCCH-type zinc finger domains 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-54039925-4	chr6	54039831	54040031	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163640)	promoter-TSS (NM_001163640)	-1.0	NM_001163640	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-52093096-4	chr16	52093011	52093211	+	724.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033238, intron 3 of 17)	intron (NM_001033238, intron 3 of 17)	61562.0	NM_001033238	208650.0	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-193173552-4	chr1	193173451	193173651	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181048)	promoter-TSS (NM_181048)	-26.0	NM_001160359	319266.0	Mm.482460	NM_181048	ENSMUSG00000079144	A130010J15Rik	-	RIKEN cDNA A130010J15 gene	protein-coding	6.85607403245186	7.13379321109207	6.64061932596654	7.00309977990822	6.76631450416544	7.09199082503407	6.82411390459697	6.89754431571666	-0.0225223874832757	0.900418270846289	0.998431161219273
Merged-chr3-3588042-2	chr3	3587942	3588142	+	616.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013920, intron 1 of 9)	RLTR16B_MM|LTR|ERVK	80012.0	NM_013920	30942.0	Mm.330897	NM_013920	ENSMUSG00000017688	Hnf4g	NR2A2	hepatocyte nuclear factor 4, gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-3660138-3	chr2	3660034	3660234	+	801.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53324.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-121675133-3	chr9	121675035	121675235	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	29894.0	NM_178677	215474.0	Mm.31421	NM_178677	ENSMUSG00000061536	Sec22c	4932412K21|5930407I15Rik|C530046H07|Sec22l3	SEC22 homolog C, vesicle trafficking protein	protein-coding	3.84385801727544	4.55648413197225	4.79910882865359	5.23311292054386	2.14243559873893	2.00108606149796	3.04551199965943	1.82329002779753	-3.52692357361176	1.43275696162743e-08	1.61158293990055e-06
Merged-chr2-148073940-3	chr2	148073844	148074044	+	967.7222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26975.0	NM_010446	15376.0	Mm.938	NM_010446	ENSMUSG00000037025	Foxa2	HNF3-beta|HNF3beta|Hnf-3b|Hnf3b|Tcf-3b|Tcf3b	forkhead box A2	protein-coding	3.19627774979445	3.51918558729713	2.55121599306583	3.30849641481686	2.23385216207045	2.1977749717508	1.68318604412627	1.35082149302884	-2.60229097952188	0.00154832688321762	0.0277818932375548
Merged-chr15-55112344-4	chr15	55112232	55112432	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145470)	promoter-TSS (NM_145470)	15.0	NM_145470	97998.0	Mm.295397	NM_145470	ENSMUSG00000022419	Deptor	Depdc6	DEP domain containing MTOR-interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-36717807-2	chr7	36717707	36717907	+	813.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172298, intron 1 of 1)	intron (NM_172298, intron 1 of 1)	19689.0	NM_172298	243931.0	Mm.44141	NM_172298	ENSMUSG00000021217	Tshz3	A630038G13Rik|Tsh3|Zfp537|mKIAA1474|teashirt3	teashirt zinc finger family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-53304800-2	chr19	53304658	53304858	+	693.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2B|LTR|ERVL	-5748.0	NM_001008542	17859.0	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	-0.946189498902753	-0.931575358611085	-0.94076171000006	-0.942807383787865	-0.573918262386353	-0.929017710499158	-0.940175780086088	-0.522856136696833	2.89469829273601	0.348654519402419	1
Merged-chr9-66158204-4	chr9	66158085	66158285	+	965.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010019)	promoter-TSS (NM_010019)	-41.0	NM_010019	13143.0	Mm.304472	NM_010019	ENSMUSG00000032380	Dapk2	-	death-associated protein kinase 2	protein-coding	3.9016720465398	4.18470735904749	2.46406122676057	4.24025049823676	3.88299229504116	4.42512396950098	2.03449107852667	3.11100913766926	-0.314666016161611	0.636562548930052	0.982417279970648
Merged-chr11-62076913-4	chr11	62076812	62077012	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001029936)	promoter-TSS (NM_001029936)	-112.0	NM_001029936	432572.0	Mm.438022	NM_001029936	ENSMUSG00000042331	Specc1	2810012G08Rik|B230396K10Rik|Cytsb	sperm antigen with calponin homology and coiled-coil domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-37679010-4	chr13	37678905	37679105	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-147033.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-102961379-1	chr3	102961279	102961479	+	578.0	f0_balb.idr	intron (NM_201622, intron 1 of 10)	intron (NM_201622, intron 1 of 10)	2754.0	NM_201619	381463.0	Mm.331269	NM_198658	ENSMUSG00000048938	Nr1h5	Fxrb	nuclear receptor subfamily 1, group H, member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-69667552-4	chr3	69667469	69667669	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	-54486.0	NM_133787	97112.0	Mm.21062	NM_133787	ENSMUSG00000027787	Nmd3	C87860	NMD3 ribosome export adaptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-79545160-2	chr15	79545060	79545260	+	825.900024	f1_balb.idr|f1_c57bl6.idr	intron (NM_001040187, intron 1 of 12)	intron (NM_001040187, intron 1 of 12)	1399.0	NM_199079	67040.0	Mm.29644	NM_152806	ENSMUSG00000055065	Ddx17	2610007K22Rik|A430025E01Rik|AI047725|C80929|Gm926|p72	DEAD (Asp-Glu-Ala-Asp) box polypeptide 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59807951-4	chr15	59807853	59808053	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12994.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	5.81624109219719	5.64136597778672	6.43951700200386	5.89563153728717	6.17860688806983	5.9219650654283	5.10320932600908	5.58590496247476	-0.247622468659292	0.388845584550939	0.878578793881975
Merged-chr11-55389988-3	chr11	55389876	55390076	+	753.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30104.0	NM_009242	20692.0	Mm.291442	NM_009242	ENSMUSG00000018593	Sparc	BM-40|ON	secreted acidic cysteine rich glycoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-46854129-1	chr1	46854029	46854229	+	1000.0	f0_c57.idr	promoter-TSS (NM_172653)	promoter-TSS (NM_172653)	-511.0	NM_172653	227059.0	Mm.233889	NM_172653	ENSMUSG00000025986	Slc39a10	2900042E17Rik|5430433I10|Zip10|mKIAA1265	solute carrier family 39 (zinc transporter), member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153169257-2	chr2	153169157	153169357	+	544.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133847, intron 1 of 17)	intron (NM_133847, intron 1 of 17)	7956.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-27237415-4	chr3	27237292	27237492	+	983.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 3 of 4)	intron (NM_178772, intron 3 of 4)	54388.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36801103-2	chr18	36801003	36801203	+	816.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027885)	promoter-TSS (NR_027885)	-660.0	NR_027885	378472.0	Mm.482379	NR_027885		Vaultrc5	Gm22653|Mvg1	vault RNA component 5	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-37320988-2	chr13	37320888	37321088	+	632.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus4|LINE|L1	-24357.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-67827132-4	chr5	67827043	67827243	+	959.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038999, intron 1 of 36)	L3|LINE|CR1	20288.0	NM_009727	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-14187100-4	chr2	14186996	14187196	+	850.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081310, intron 1 of 3)	MLT1C-int|LTR|ERVL-MaLR	12572.0	NM_001081310	625286.0	Mm.158781	NM_001081310	ENSMUSG00000061531	Tmem236	2010003H20Rik|Fam23a|Gm613	transmembrane protein 236	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-36252602-4	chr17	36252448	36252648	+	998.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5298.0	NM_026308	67676.0	Mm.27131	NM_026308	ENSMUSG00000024446	Rpp21	0610037N01Rik	ribonuclease P 21 subunit	protein-coding	3.47834425542059	4.15294501989357	3.56680931374552	1.86081836415536	2.72289609164197	2.80522227944187	3.18059654776808	3.17314319737363	-0.813583398124427	0.236699880395948	0.733553768261449
Merged-chr16-55636992-4	chr16	55636861	55637061	+	999.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	142230.0	NR_039578	100628589.0		NR_039578	ENSMUSG00000093292	Mir5118	mmu-mir-5118|mu-mir-5118	microRNA 5118	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75914183-2	chr11	75914083	75914283	+	697.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291159, intron 1 of 4)	intron (NM_001291159, intron 1 of 4)	-3124.0	NM_029548	380714.0	Mm.425697	NM_029548	ENSMUSG00000020847	Rph3al	Gm1753|Noc2	rabphilin 3A-like (without C2 domains)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-45734981-3	chr11	45734887	45735087	+	907.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73096.0	NR_045876	100009664.0	Mm.415439	NR_045876		F630206G17Rik	-	RIKEN cDNA F630206G17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-53768758-2	chr19	53768658	53768858	+	734.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001170847, intron 1 of 13)	intron (NM_001170847, intron 1 of 13)	91452.0	NM_001170847	73713.0	Mm.313695	NM_001170847	ENSMUSG00000043639	Rbm20	1110018J23Rik|2010003H22Rik|AI646761	RNA binding motif protein 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-34105822-2	chr5	34105715	34105915	+	794.5	f0_balb.idr|f1_c57bl6.idr	intron (NM_181857, intron 13 of 24)	RMER19B|LTR|ERVK	-12925.0	NR_040703	75357.0	Mm.410806	NR_040703	ENSMUSG00000106902	4930557J02Rik	-	RIKEN cDNA 4930557J02 gene	ncRNA	1.92400241593853	2.36416038411723	3.47623367122546	3.19579834194202	1.28261357515826	3.11092629451669	1.68624812906819	3.14349094698383	-0.578525302000356	0.526958679142746	0.948839578239191
Merged-chr5-43869390-4	chr5	43869251	43869451	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007646, intron 1 of 7)	intron (NM_007646, intron 1 of 7)	542.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-66700837-4	chr1	66700765	66700965	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025683)	promoter-TSS (NM_025683)	34.0	NM_001310644	66646.0	Mm.240912	NM_025683	ENSMUSG00000026005	Rpe	2810429B02Rik|5730518J08Rik	ribulose-5-phosphate-3-epimerase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-20470440-6	chr11	20470134	20470334	+	897.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-73019.0	NM_021372	58172.0	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5804530-4	chr17	5804439	5804639	+	923.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5049.0	NR_045080	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-30969482-4	chr16	30969411	30969611	+	757.854187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198626, intron 3 of 3)	intron (NM_198626, intron 3 of 3)	111921.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	3.64008047459165	3.94544389562317	2.35076268209786	3.66056755522348	2.60181246795259	2.25136815940347	3.84847522081093	2.6113543687767	-0.840635791386234	0.226682677713093	0.719693695355235
Merged-chr8-111367049-2	chr8	111366949	111367149	+	754.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_178086, intron 1 of 6)	intron (NM_178086, intron 1 of 6)	26772.0	NM_178086	338521.0	Mm.41083	NM_178086	ENSMUSG00000033579	Fa2h	FAAH|Faxdc1|G630055L08Rik	fatty acid 2-hydroxylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-92466122-4	chr5	92466002	92466202	+	851.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007644, intron 2 of 11)	intron (NM_007644, intron 2 of 11)	7545.0	NR_105843	102466159.0		NR_105843	ENSMUSG00000099160	Mir6415	Gm27714|mmu-mir-6415	microRNA 6415	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-19143259-2	chr10	19143159	19143359	+	748.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_038021, intron 1 of 3)	intron (NR_038021, intron 1 of 3)	1510.0	NR_038021	100504265.0	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-36348305-4	chr19	36348190	36348390	+	945.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30777.0	NM_029508	76073.0	Mm.259180	NM_029508	ENSMUSG00000024805	Pcgf5	0610009F02Rik|1110054A01Rik|5830406C17Rik|5830443C21Rik|9530023M17Rik|AI324127	polycomb group ring finger 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-25485702-4	chr9	25485597	25485797	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 2 of 7)	intron (NM_026189, intron 2 of 7)	4100.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-45396092-3	chr9	45395988	45396188	+	895.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_022004)	TTS (NM_022004)	-3621.0	NR_028499	11936.0	Mm.22742	NM_007503	ENSMUSG00000059412	Fxyd2	Atp1g1	FXYD domain-containing ion transport regulator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70753851-2	chr8	70753751	70753951	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009001)	promoter-TSS (NM_009001)	-828.0	NM_001328047	19339.0	Mm.5083	NM_009001	ENSMUSG00000031840	Rab3a	-	RAB3A, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-108555310-2	chr3	108555210	108555410	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028538)	promoter-TSS (NR_028538)	-908.0	NR_028538	100217438.0		NR_028538		Scarna2	MBII-382	small Cajal body-specific RNA 2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-114133883-3	chr8	114133795	114133995	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001290181, exon 1 of 4)	5' UTR (NM_001290181, exon 1 of 4)	321.0	NM_024437	67528.0	Mm.27889	NM_024437	ENSMUSG00000031767	Nudt7	1300007B24Rik|2210404C19Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 7	protein-coding	-0.953852725537661	-0.938954416352047	-0.948469824706124	-0.536623461716514	-0.582072368205537	-0.936410107061028	-0.947886214382756	-0.950144718708725	-0.189260031779864	0.952524681432003	1
Merged-chr4-132555147-4	chr4	132555053	132555253	+	973.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8914.0	NM_001081211	19204.0	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-122808317-3	chr4	122808217	122808417	+	885.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	-27910.0	NM_008917	19063.0	Mm.277719	NM_008917	ENSMUSG00000028657	Ppt1	9530043G02Rik|AA960502|C77813|CLN1|D4Ertd184e|INCL|PPT	palmitoyl-protein thioesterase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-5958111-2	chr9	5958011	5958211	+	568.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3B|LINE|L1	-210375.0	NM_001357398	71785.0	Mm.390122	NM_027924	ENSMUSG00000032006	Pdgfd	1110003I09Rik	platelet-derived growth factor, D polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-83916213-2	chr14	83916113	83916313	+	542.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	159077.0	NR_153783	102635012.0	Mm.399509	NR_153783	ENSMUSG00000115043	Gm32455	-	predicted gene, 32455	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107280402-3	chr9	107280268	107280468	+	998.5238039999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316691, intron 1 of 7)	intron (NM_001316691, intron 1 of 7)	9028.0	NM_001316691	102626.0	Mm.222612	NM_178907	ENSMUSG00000032577	Mapkapk3	3PK|AI874665|MAPKAP-K3|MAPKAP3|MK-3|MK3|MapkKapk3	mitogen-activated protein kinase-activated protein kinase 3	protein-coding	2.6259730933724	3.70151063017567	3.5834037048472	2.77293848557215	2.76101346566041	3.21341161542725	3.46466643618116	3.36152188570242	-0.0461644730785215	0.940978432391002	0.998431161219273
Merged-chr6-39207531-2	chr6	39207399	39207599	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_001033430)	promoter-TSS (NM_001033430)	-726.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-43787462-2	chr13	43787362	43787562	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009856, intron 2 of 4)	intron (NM_009856, intron 2 of 4)	2350.0	NM_001289915	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-94791656-2	chr13	94791556	94791756	+	818.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009321, intron 1 of 3)	intron (NM_009321, intron 1 of 3)	2713.0	NM_009321	21371.0	Mm.379025	NM_009321	ENSMUSG00000042043	Tbca	Tbca13	tubulin cofactor A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-91239293-4	chr1	91239198	91239398	+	804.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11006.0	NM_001355763	67921.0	Mm.337238	NM_026454	ENSMUSG00000034343	Ube2f	2510010F15Rik|AI851109	ubiquitin-conjugating enzyme E2F (putative)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-61594964-4	chr2	61594876	61595076	+	770.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149323, intron 2 of 9)	MTD|LTR|ERVL-MaLR	1879.0	NR_149323	21353.0	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-109778531-4	chr8	109778429	109778629	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009677)	promoter-TSS (NM_009677)	-54.0	NM_009677	11765.0	Mm.37210	NM_009677	ENSMUSG00000031731	Ap1g1	AA409002|AU041323|AW551707|Adtg|D8Ertd374e	adaptor protein complex AP-1, gamma 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-62623389-4	chr17	62623289	62623489	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010109, intron 2 of 3)	intron (NM_010109, intron 2 of 3)	257928.0	NM_207654	13640.0	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-48194748-2	chr4	48194648	48194848	+	661.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355184, intron 10 of 10)	intron (NM_001355184, intron 10 of 10)	18467.0	NR_035484	100316708.0		NR_035484	ENSMUSG00000087844	Mir1958	mmu-mir-1958	microRNA 1958	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-119167785-4	chr2	119167722	119167922	+	988.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177157)	promoter-TSS (NM_177157)	34.0	NM_177157	320415.0	Mm.86373	NM_177157	ENSMUSG00000046814	Gchfr	2010323F13Rik|GFRP|P35	GTP cyclohydrolase I feedback regulator	protein-coding	1.31970018295495	0.818565160318212	0.805622768686672	1.50474481421816	1.43097730450696	0.821456409706155	1.56924975502401	1.51364368282183	0.83213739128732	0.559066747394066	0.960321604678676
Merged-chr16-16104476-4	chr16	16104381	16104581	+	965.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355731, intron 5 of 18)	RMER1B|Other|Other	42370.0	NM_001355731	224008.0	Mm.244703	NM_146068	ENSMUSG00000041974	Spidr	2310008H04Rik|Kiaa0146	scaffolding protein involved in DNA repair	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-114076153-3	chr13	114076069	114076269	+	838.722229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172595, intron 4 of 4)	MER119|DNA|hAT-Charlie	75423.0	NR_045836	319803.0	Mm.386896	NM_177004	ENSMUSG00000114213	A430090L17Rik	-	RIKEN cDNA A430090L17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-37049241-3	chr19	37049168	37049368	+	722.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198300, intron 9 of 10)	intron (NM_198300, intron 9 of 10)	123189.0	NM_001080706	107182.0	Mm.295062	NM_001080706	ENSMUSG00000040565	Btaf1	AI414500|AI447930|E430027O22Rik|TAF170	B-TFIID TATA-box binding protein associated factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-95081023-4	chr8	95080907	95081107	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028805)	promoter-TSS (NM_028805)	-194.0	NM_028805	74187.0	Mm.28382	NM_028805	ENSMUSG00000031787	Katnb1	2410003J24Rik|KAT	katanin p80 (WD40-containing) subunit B 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-96304259-2	chr11	96304159	96304359	+	623.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008268, intron 1 of 1)	intron (NM_008268, intron 1 of 1)	747.0	NM_008268	15413.0	Mm.207	NM_008268	ENSMUSG00000038700	Hoxb5	AI385717|Hox-2.1	homeobox B5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-72833482-1	chr17	72833382	72833582	+	732.0	f0_balb.idr	Intergenic	Intergenic	-3146.0	NM_027166	383295.0	Mm.277533	NM_027166	ENSMUSG00000039770	Ypel5	2310076K21Rik|CGI-127	yippee like 5	protein-coding	-0.811871916059096	-1.15223696528766	-1.16265319256742	-1.17120939178942	-0.911301499403313	-1.14997972538381	-1.16029518702849	-1.16967783621951	-0.385190450359539	0.909269396991215	1
Merged-chr2-104847804-2	chr2	104847704	104847904	+	614.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178695, intron 2 of 5)	L2b|LINE|L2	2046.0	NM_178695	228413.0	Mm.259609	NM_178695	ENSMUSG00000027171	Prrg4	9930111I18Rik|TMG4	proline rich Gla (G-carboxyglutamic acid) 4 (transmembrane)	protein-coding	0.756521191541725	1.21595237880506	1.76398354459916	0.974003547561825	1.09012458560926	1.22544824952554	1.78057321293876	0.978272558674601	0.251060366952918	0.849901716083731	0.998431161219273
Merged-chr5-135551121-3	chr5	135551024	135551224	+	878.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6002.0	NM_146001	215114.0	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding	2.64958348740281	2.24036562815532	2.56972753580497	2.7858242061882	2.49627036224782	2.25570136993975	2.58901186731003	2.79953304559742	-0.0597264478824936	0.936247161847857	0.998431161219273
Merged-chr19-42190560-2	chr19	42190460	42190660	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177319, exon 13 of 13)	3' UTR (NM_177319, exon 13 of 13)	11692.0	NM_018780	54612.0	Mm.470071	NM_018780	ENSMUSG00000018822	Sfrp5	AI605071|SARP3	secreted frizzled-related sequence protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27630456-1	chr17	27630356	27630556	+	1000.0	f1_c57bl6.idr	TTS (NM_025963)	TTS (NM_025963)	4786.0	NM_025963	67097.0	Mm.275810	NM_025963	ENSMUSG00000052146	Rps10	2210402A09Rik	ribosomal protein S10	protein-coding	-1.50811478453619	-0.99851579554048	-1.48484165847197	-1.49312904261012	-1.50577282675516	-1.47256636097272	-1.48255773576353	-1.49164560481169	-2.24133836997777	0.518237887813808	1
Merged-chr4-86689871-3	chr4	86689773	86689973	+	896.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19814.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	0.0263333012165335	0.0912571886951504	-0.105073274623744	0.418474694271938	-0.114244743913986	0.518220611822763	-0.103985946897118	-0.108211330588682	-0.289708329526545	0.894906040521015	1
Merged-chr7-43529265-2	chr7	43529165	43529365	+	977.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021293, intron 5 of 5)	intron (NM_021293, intron 5 of 5)	3906.0	NM_001111058	12489.0	Mm.140157	NM_021293	ENSMUSG00000004609	Cd33	Siglec-3|gp67	CD33 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-72850035-4	chr2	72849960	72850160	+	787.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36343.0	NR_102349	76218.0	Mm.75260	NR_102348	ENSMUSG00000085427	6430710C18Rik	5033406J01Rik	RIKEN cDNA 6430710C18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-56677318-3	chr16	56677208	56677408	+	761.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001014399, intron 22 of 27)	intron (NM_001014399, intron 22 of 27)	40142.0	NM_001357124	21787.0	Mm.425970	NM_019678	ENSMUSG00000022757	Tfg	AI173908	Trk-fused gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-130159986-4	chr5	130159827	130160027	+	927.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11892.0	NM_001199059	56715.0	Mm.288639	NM_019983	ENSMUSG00000025340	Rabgef1	Rab5ef|Rabex5|Rin2	RAB guanine nucleotide exchange factor (GEF) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-43361641-2	chr1	43361541	43361741	+	663.299988	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-84110.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-113742675-2	chr9	113742575	113742775	+	971.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114347, intron 1 of 39)	intron (NM_001114347, intron 1 of 39)	1202.0	NM_001114347	76499.0	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-75905066-2	chr18	75904963	75905163	+	564.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_145356, intron 2 of 4)	intron (NM_145356, intron 2 of 4)	84885.0	NM_145356	207259.0	Mm.159332	NM_145356	ENSMUSG00000044646	Zbtb7c	B230208J24Rik|Kr-pok|Zbtb36	zinc finger and BTB domain containing 7C	protein-coding	-1.50578006401468	-1.47341050667617	-1.17515363242603	-1.49124015727368	-1.50350778094084	-1.47128922826211	-1.3269605056278	-1.48980085267657	-0.800720836253042	0.817773358996722	1
Merged-chr4-116651559-4	chr4	116651367	116651567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_021473, exon 1 of 9)	5' UTR (NM_021473, exon 1 of 9)	207.0	NM_021473	58810.0	Mm.30085	NM_021473	ENSMUSG00000028692	Akr1a1	2610201A18Rik|Akr1a4	aldo-keto reductase family 1, member A1 (aldehyde reductase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-110672798-2	chr13	110672698	110672898	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-230701.0	NR_131193	75139.0	Mm.490931	NR_131193	ENSMUSG00000114472	Gm38397	-	predicted gene, 38397	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-13684889-2	chr11	13684789	13684989	+	881.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	494152.0	NR_131011	75280.0	Mm.108492	NR_131011	ENSMUSG00000085452	4930554G24Rik	-	RIKEN cDNA 4930554G24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-101264727-1	chr4	101264627	101264827	+	1000.0	f0_balb.idr	intron (NM_146145, intron 1 of 24)	CpG	555.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34169472-3	chr17	34169372	34169572	+	856.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16281.0	NM_010387	14999.0	Mm.460938	NM_010387	ENSMUSG00000079547	H2-DMb1	AI385589|H-2Mb1|H2-Mb1	histocompatibility 2, class II, locus Mb1	protein-coding	0.540810529726555	1.46954785559396	1.0711307463732	0.740916018039592	0.542870930829606	1.13054919246324	1.20789697252013	0.556012081622521	-0.498996818570652	0.757091916267887	0.998431161219273
Merged-chr6-47789810-2	chr6	47789710	47789910	+	551.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR51A_Mm|LTR|ERVK?	13842.0	NR_030485	735289.0		NR_030485	ENSMUSG00000076060	Mir704	Mirn704|mir-704|mmu-mir-704	microRNA 704	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59822328-3	chr15	59822235	59822435	+	833.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27376.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	0.147909366573634	-0.109585348851908	-0.301830213930399	0.307085156335175	-0.30948302326443	-0.296773004439311	-0.30092117610896	-0.304451666357965	-3.62000519898446	0.134420710018419	1
Merged-chr3-94902940-4	chr3	94902843	94903043	+	845.7333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15985.0	NM_008945	19172.0	Mm.368	NM_008945	ENSMUSG00000005779	Psmb4	Pros-27	proteasome (prosome, macropain) subunit, beta type 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-49189870-2	chr16	49189770	49189970	+	675.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166210, intron 38 of 40)	intron (NM_001166210, intron 38 of 40)	132384.0	NM_001166210	667772.0	Mm.301387	NM_001166210	ENSMUSG00000092009	Myh15	EG667772	myosin, heavy chain 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120064652-1	chr11	120064552	120064752	+	583.0	f1_c57bl6.idr	exon (NM_009734, exon 26 of 26)	exon (NM_009734, exon 26 of 26)	-17507.0	NM_007377	11302.0	Mm.6826	NM_007377	ENSMUSG00000025375	Aatk	AATYK|aatyk1|mKIAA0641	apoptosis-associated tyrosine kinase	protein-coding	1.40636908822908	1.03725275114147	0.324687029057039	0.316990233073119	0.971796474019071	0.336731519698042	0.326870840646288	0.318341431360917	-1.66584220872222	0.389874287440742	1
Merged-chr1-82798531-4	chr1	82798429	82798629	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30073.0	NM_025453	66261.0	Mm.46325	NM_025453	ENSMUSG00000026149	Tm4sf20	1810018L02Rik	transmembrane 4 L six family member 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-58453121-3	chr16	58453039	58453239	+	994.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356484, intron 9 of 15)	intron (NM_001356484, intron 9 of 15)	44604.0	NM_028523	73379.0	Mm.373589	NM_028523	ENSMUSG00000035107	Dcbld2	1700055P21Rik|AW146002|CLCP1|Esdn	discoidin, CUB and LCCL domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-28953868-4	chr13	28953762	28953962	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009238)	promoter-TSS (NM_009238)	-163.0	NM_009238	20677.0	Mm.240627	NM_009238	ENSMUSG00000076431	Sox4	AA682046|Sox-4	SRY (sex determining region Y)-box 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-78461658-2	chr10	78461558	78461758	+	690.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172134, intron 1 of 10)	RMER1A|Other|Other	3290.0	NM_172134	216134.0	Mm.206159	NM_172134	ENSMUSG00000032788	Pdxk	2310036D04Rik|AA119688|C77999	pyridoxal (pyridoxine, vitamin B6) kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-17586282-2	chr6	17586182	17586382	+	968.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50728.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-29853608-4	chr7	29853500	29853700	+	976.30835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173738)	promoter-TSS (NM_173738)	48.0	NM_173738	233057.0	Mm.296864	NM_173738	ENSMUSG00000050855	Zfp940	-	zinc finger protein 940	protein-coding	4.85513413330486	4.5067010627114	4.36577943297134	3.38628506942773	4.22180083722799	4.365225503724	4.5943941595299	3.68092618362895	-0.169638732657296	0.709852056690592	0.998431161219273
Merged-chr3-146110585-4	chr3	146110498	146110698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(GAAA)n|Simple_repeat|Simple_repeat	-2562.0	NM_172864	242253.0	Mm.235040	NM_172864	ENSMUSG00000043020	Wdr63	4931433A13Rik|IC140|Ida7	WD repeat domain 63	protein-coding	5.24589254328204	5.31888982285418	5.08418143712063	5.78771236706707	5.68294106877232	5.67914294586997	6.02003842654223	5.83235617356998	0.478288574359629	0.0770680849248975	0.421963591236197
Merged-chr8-120537289-4	chr8	120537198	120537398	+	986.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145896)	promoter-TSS (NM_001145896)	-111.0	NM_001145896	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-16111014-3	chr1	16110953	16111153	+	792.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133832, intron 2 of 5)	intron (NM_133832, intron 2 of 5)	5171.0	NM_133832	98711.0	Mm.274376	NM_133832	ENSMUSG00000025921	Rdh10	3110069K09Rik|4921506A21Rik|AI875664|AW549993|D1Ertd762e|m366Asp	retinol dehydrogenase 10 (all-trans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114789371-4	chr11	114789313	114789513	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001102615, exon 18 of 20)	exon (NM_001102615, exon 18 of 20)	6479.0	NM_028055	72014.0	Mm.38347	NM_028055	ENSMUSG00000000202	Btbd17	1500005I02Rik|Tango10a	BTB (POZ) domain containing 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-93031046-2	chr16	93030946	93031146	+	782.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-204972.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-77798849-3	chr15	77798759	77798959	+	758.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022410, intron 3 of 40)	intron (NM_022410, intron 3 of 40)	-41849.0	NM_001357895	239552.0	Mm.125650	NM_001081970	ENSMUSG00000056656	Apol8	9830006J20Rik|APOL-II|Apol2	apolipoprotein L 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-37816474-2	chr13	37816374	37816574	+	669.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-9564.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-45224321-2	chr19	45224221	45224421	+	600.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10915.0	NM_010691	16814.0	Mm.116815	NM_010691	ENSMUSG00000025216	Lbx1	Lbx1h	ladybird homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141558760-4	chr4	141558669	141558869	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12607.0	NR_030695	320456.0	Mm.32859	NM_177163		B330016D10Rik	-	RIKEN cDNA B330016D10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-50210277-4	chr11	50210202	50210402	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290769, intron 1 of 7)	CpG	518.0	NM_001290769	18412.0	Mm.40828	NM_011018	ENSMUSG00000015837	Sqstm1	A170|OSF-6|Osi|STAP|STONE14|p62	sequestosome 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-138619705-3	chr1	138619610	138619810	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311148)	promoter-TSS (NM_001311148)	47.0	NM_021605	59125.0	Mm.143817	NM_021605	ENSMUSG00000026393	Nek7	2810460C19Rik|AU020186	NIMA (never in mitosis gene a)-related expressed kinase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-170451092-3	chr2	170450984	170451184	+	777.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23239.0	NM_029815	76960.0	Mm.240850	NM_029815	ENSMUSG00000013523	Bcas1	2210416M21Rik|9030223A09Rik|AI841227|NABC1	breast carcinoma amplified sequence 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-144687903-2	chr3	144687803	144688003	+	888.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_019464, exon 9 of 9)	3' UTR (NM_019464, exon 9 of 9)	32432.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94405680-4	chr10	94405556	94405756	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 1 of 4)	L2c|LINE|L2	93707.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21717583-2	chr9	21717483	21717683	+	953.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5993.0	NM_001252658	16835.0	Mm.3213	NM_010700	ENSMUSG00000032193	Ldlr	Hlb301	low density lipoprotein receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-121877282-4	chr9	121877196	121877396	+	783.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19500.0	NM_001357840	56295.0	Mm.347915	NM_019814	ENSMUSG00000038412	Higd1a	2210020B17Rik|7420700H20Rik|AI303276|AW049839|HIMP1|Hig1	HIG1 domain family, member 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-77229170-4	chr5	77229081	77229281	+	841.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17710.0	NM_001289768	69982.0	Mm.46106	NM_183284	ENSMUSG00000053030	Spink2	1700007F22Rik|AV038945|HUSI-II	serine peptidase inhibitor, Kazal type 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75139792-2	chr11	75139692	75139892	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001002764, intron 14 of 18)	intron (NM_001002764, intron 14 of 18)	28360.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80929920-4	chr10	80929802	80930002	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008655)	promoter-TSS (NM_008655)	-189.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-87481465-2	chr6	87481365	87481565	+	776.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037727, intron 4 of 10)	ORR1A3|LTR|ERVL-MaLR	14862.0	NR_104483	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	-1.32440223303897	-1.29339468673833	-0.717877708899544	-1.31276353204239	-1.32392690786997	-1.29109028300231	-1.30162128075409	-1.31119997543009	-2.49510383040271	0.470258445164311	1
Merged-chr16-8827900-2	chr16	8827800	8828000	+	669.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2200.0	NM_001081400	69053.0	Mm.390868	NM_001081400	ENSMUSG00000022507	1810013L24Rik	1110017P05Rik|3010002C02Rik|AA792997|AW124177|Gm19906|R74903	RIKEN cDNA 1810013L24 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-20807512-2	chr15	20807412	20807612	+	911.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-140762.0	NM_022816	64833.0	Mm.352763	NM_022816	ENSMUSG00000047565	Acot10	Acate3|MT-ACT48|p48	acyl-CoA thioesterase 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-20400315-2	chr14	20400215	20400415	+	560.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029698, intron 25 of 28)	intron (NM_029698, intron 25 of 28)	-6681.0	NM_025440	66242.0	Mm.23747	NM_025440	ENSMUSG00000049960	Mrps16	1500011E11Rik|Mprs16|S16mt	mitochondrial ribosomal protein S16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-160336589-3	chr2	160336523	160336723	+	825.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9129.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69332001-3	chr11	69331877	69332077	+	855.7333369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010599, intron 13 of 13)	intron (NM_010599, intron 13 of 13)	5719.0	NM_010599	16499.0	Mm.232472	NM_010599	ENSMUSG00000018470	Kcnab3	C330022D06Rik|Kcnab4|mKv(beta)4	potassium voltage-gated channel, shaker-related subfamily, beta member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-125464567-1	chr5	125464467	125464667	+	589.0	f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-11306.0	NM_030210	78894.0	Mm.431573	NM_030210	ENSMUSG00000029482	Aacs	2210408B16Rik|SUR5	acetoacetyl-CoA synthetase	protein-coding	0.104953610439089	0.764729625345005	0.118653661446088	0.671739851130327	0.106231427030034	0.126770313045472	0.120117877925456	0.779777284406139	-0.799994537178408	0.709694742511724	1
Merged-chr7-25265931-2	chr7	25265831	25266031	+	772.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13C2|LTR|ERVK	-1768.0	NM_001302811	71722.0	Mm.28833	NM_027882	ENSMUSG00000005442	Cic	1200010B10Rik|mKIAA0306	capicua transcriptional repressor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100719436-4	chr11	100719338	100719538	+	978.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305003, intron 2 of 5)	intron (NM_001305003, intron 2 of 5)	5588.0	NM_029307	75482.0	Mm.46175	NM_029307	ENSMUSG00000017832	Hspb9	1700007H20Rik	heat shock protein, alpha-crystallin-related, B9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-88980840-2	chr5	88980740	88980940	+	837.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359211, intron 3 of 26)	intron (NM_001359211, intron 3 of 26)	-47126.0	NM_001359212	54403.0	Mm.41044	NM_018760	ENSMUSG00000060961	Slc4a4	AI835705|NBC|NBC1	solute carrier family 4 (anion exchanger), member 4	protein-coding	-1.3681463318974	-1.33624156493372	-1.34650167276047	-0.80669348975676	-1.36769697821496	-1.33401815676661	-1.34417900924365	-1.3534210303531	-2.3580830592467	0.49586638340111	1
Merged-chr2-37359253-4	chr2	37359166	37359366	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026176)	promoter-TSS (NM_026176)	66.0	NM_026176	67466.0	Mm.30709	NM_026176	ENSMUSG00000009030	Pdcl	1200011E13Rik|AW108059|PhLP1	phosducin-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-106428325-1	chr1	106428225	106428425	+	669.0	f1_balb.idr	Intergenic	LTR16C|LTR|ERVL	118306.0	NR_106164	102466254.0		NR_106164	ENSMUSG00000098344	Mir3473f	Gm27846|mmu-mir-3473f	microRNA 3473f	ncRNA	-1.52696403314699	-1.49523967873556	-1.5048333853602	-1.51271394162622	-1.52473704212565	-1.49316068248889	-1.50266158046844	-1.06847079017215	2.01069003169785	0.564432837776867	1
Merged-chr11-23895236-4	chr11	23895153	23895353	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172555)	promoter-TSS (NM_172555)	17.0	NM_172555	216578.0	Mm.470599	NM_172555	ENSMUSG00000020273	Papolg	9630006B20Rik	poly(A) polymerase gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-29772794-4	chr16	29772745	29772945	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	193511.0	NM_001199177	74143.0	Mm.274285	NM_133752	ENSMUSG00000038084	Opa1	1200011N24Rik|AI225888|AI847218|lilr3|mKIAA0567	OPA1, mitochondrial dynamin like GTPase	protein-coding	5.60364148757907	5.35013880708299	5.92205818253247	6.57583417020565	6.08137428756684	5.70604425947658	3.46071537000535	5.74657611694348	-0.453563634548072	0.482318536317173	0.930060200507932
Merged-chr1-165635589-2	chr1	165635489	165635689	+	716.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1048.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-103205859-2	chr3	103205759	103205959	+	726.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34204.0	NM_001356331	68183.0	Mm.104919	NM_026602	ENSMUSG00000005687	Bcas2	6430539P16Rik|AI132645|C76366|C80030	breast carcinoma amplified sequence 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-44127257-2	chr16	44127157	44127357	+	974.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_007508, intron 1 of 14)	L1M2|LINE|L1	12002.0	NM_001358203	11964.0	Mm.217787	NM_007508	ENSMUSG00000052459	Atp6v1a	AI647066|Atp6a1|Atp6a2|Atp6v1a1|VA68|VPP2	ATPase, H+ transporting, lysosomal V1 subunit A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-82866512-4	chr10	82866426	82866626	+	975.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025499)	promoter-TSS (NM_025499)	-100.0	NM_025499	66341.0	Mm.443284	NM_025499	ENSMUSG00000109864	Eid3	1700027M21Rik|NS4EB	EP300 interacting inhibitor of differentiation 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-59260334-2	chr3	59260235	59260435	+	740.5	f0_balb.idr|f0_c57.idr	intron (NM_177855, intron 31 of 43)	intron (NM_177855, intron 31 of 43)	2650.0	NM_027571	70839.0	Mm.422675	NM_027571	ENSMUSG00000036353	P2ry12	2900079B22Rik|4921504D23Rik|P2Y12	purinergic receptor P2Y, G-protein coupled 12	protein-coding	3.35241025071216	2.60642911892776	3.33041959457672	3.87475176223048	1.95275321121697	4.32507377876038	2.68759992674205	2.59629104233534	-0.220299093577295	0.764793997940948	0.998431161219273
Merged-chr14-73389288-4	chr14	73389185	73389385	+	845.616699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3996.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-113812218-4	chr5	113812101	113812301	+	916.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR6B_Mm|LTR|ERV1	-11849.0	NM_146162	231633.0	Mm.41681	NM_146162	ENSMUSG00000054675	Tmem119	AW208946|BC025600|obif	transmembrane protein 119	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-70112500-2	chr12	70112400	70112600	+	608.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_104398)	promoter-TSS (NR_104398)	-465.0	NR_104397	18080.0	Mm.244047	NM_008697	ENSMUSG00000021068	Nin	3110068G20Rik|AI385615|AU024711|mKIAA1565	ninein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-36540941-3	chr15	36540851	36541051	+	591.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025712, intron 4 of 13)	intron (NM_025712, intron 4 of 13)	14622.0	NM_001347022	66696.0	Mm.253627	NM_025712	ENSMUSG00000013611	Snx31	4631426E05Rik	sorting nexin 31	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-56804668-2	chr6	56804568	56804768	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-6855.0	NM_001362213	210973.0	Mm.57295	NM_145958	ENSMUSG00000059486	Kbtbd2	BC022962|Bklhd1|mKIAA1489	kelch repeat and BTB (POZ) domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-74770667-4	chr13	74770567	74770767	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001301156)	promoter-TSS (NM_001301156)	69.0	NM_001301156	12380.0	Mm.29163	NM_009817	ENSMUSG00000021585	Cast	-	calpastatin	protein-coding	4.36053507712159	4.29264176866225	4.7638884854077	4.6466122386221	3.68474716019779	3.89316871060147	3.48526649969116	3.56038868457062	-1.17509039011386	0.0058623987466916	0.0755159780201321
Merged-chr16-92715640-4	chr16	92715537	92715737	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111022, intron 2 of 6)	intron (NM_001111022, intron 2 of 6)	-18308.0	NM_009821	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41280731-2	chr19	41280631	41280831	+	702.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 16 of 16)	B4A|SINE|B4	-16727.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-138165639-1	chr1	138165539	138165739	+	629.333313	f0_balb.idr	intron (NM_001268286, intron 2 of 28)	intron (NM_001268286, intron 2 of 28)	9487.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-30084564-2	chr11	30084464	30084664	+	946.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58531.0	NM_146016	237711.0	Mm.445271	NM_146016	ENSMUSG00000044072	Eml6	2900083P10Rik|C230094A16Rik|EMAP-6	echinoderm microtubule associated protein like 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34303968-2	chr17	34303857	34304057	+	746.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-1910.0	NM_010382	14969.0	Mm.22564	NM_010382	ENSMUSG00000060586	H2-Eb1	Eb|H-2Eb|H2Eb|Ia-4|Ia4	histocompatibility 2, class II antigen E beta	protein-coding	4.15855596969	3.75255583935318	3.10852949089874	1.62296553722486	3.15334710372932	3.77931176981982	3.23806479156833	3.31697921257752	-0.10745011026103	0.877279985877445	0.998431161219273
Merged-chr10-78576768-2	chr10	78576668	78576868	+	629.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_173751, exon 3 of 16)	exon (NM_173751, exon 3 of 16)	1777.0	NM_001359303	216136.0	Mm.2644	NM_173751	ENSMUSG00000032763	Ilvbl	5830463I21|AI415009	ilvB (bacterial acetolactate synthase)-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-99544486-4	chr12	99544386	99544586	+	741.549988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19355.0	NR_136760	102639404.0	Mm.396324	NR_136760	ENSMUSG00000097917	Gm26839	-	predicted gene, 26839	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-21173523-2	chr5	21173423	21173623	+	768.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	-2756.0	NR_153366	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-93963210-4	chr11	93963087	93963287	+	986.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008704, intron 3 of 4)	intron (NM_008704, intron 3 of 4)	5334.0	NM_008704	18102.0	Mm.439702	NM_008704	ENSMUSG00000037601	Nme1	AL024257|NDPK-A|NM23-M1|NM23A	NME/NM23 nucleoside diphosphate kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-78536917-4	chr1	78536810	78537010	+	735.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026713, intron 6 of 6)	intron (NM_026713, intron 6 of 6)	25850.0	NM_026713	68393.0	Mm.41325	NM_026713	ENSMUSG00000012187	Mogat1	0610030A14Rik|1110064N14Rik|Dgat2l|Dgat2l1|MGAT1|WI1-2612I11.1|mDC2	monoacylglycerol O-acyltransferase 1	protein-coding	0.609691271275553	0.454131040570666	0.432732460931466	0.260218684713867	0.876864078217325	0.615149016931971	0.266017095226041	0.419040200699289	0.846158946478981	0.630119294753779	1
Merged-chr10-57486821-4	chr10	57486667	57486867	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045353)	promoter-TSS (NR_045353)	382.0	NM_008297	15500.0	Mm.261395	NM_008297	ENSMUSG00000019878	Hsf2	AI661205	heat shock factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127776537-4	chr7	127776448	127776648	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178029)	promoter-TSS (NM_178029)	-841.0	NM_178029	233904.0	Mm.435494	NM_010940	ENSMUSG00000042308	Setd1a	BC010250|KMT2F|Nsccn1|mKIAA0339|mNSC1	SET domain containing 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-118256801-5	chr2	118256702	118256902	+	999.43335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_027759, exon 1 of 11)	5' UTR (NM_027759, exon 1 of 11)	164.0	NM_027759	71313.0	Mm.85046	NM_027759	ENSMUSG00000027344	Fsip1	1700012M13Rik|4933432K11Rik	fibrous sheath-interacting protein 1	protein-coding	1.05527068874684	0.217624291308566	0.209551544545547	0.676132020080191	0.194304609783651	1.0190057759075	0.211338764560913	0.204369850133932	-0.644688135474434	0.752812127151777	1
Merged-chr9-110621534-2	chr9	110621434	110621634	+	764.166687	f1_balb.idr|f1_c57bl6.idr	exon (NM_026012, exon 5 of 5)	exon (NM_026012, exon 5 of 5)	2859.0	NM_026012	67169.0	Mm.46680	NM_026012	ENSMUSG00000032491	Nradd	2610311B09Rik|BB104149|NRDD|NRH2|PLAIDD	neurotrophin receptor associated death domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-85381840-2	chr6	85381740	85381940	+	927.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7206.0	NM_001003955	52055.0	Mm.220334	NM_177466	ENSMUSG00000051343	Rab11fip5	9130206P09Rik|C75969|D6Ertd32e|GAF1|RIP11	RAB11 family interacting protein 5 (class I)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-136794360-3	chr6	136794234	136794434	+	976.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10097.0	NM_175652	320332.0	Mm.246720	NM_175652	ENSMUSG00000096010	Hist4h4	B130044J01Rik	histone cluster 4, H4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-9618909-3	chr18	9618843	9619043	+	650.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007593, exon 1 of 1)	exon (NM_007593, exon 1 of 1)	526.0	NM_007593	26369.0	Mm.195831	NM_007593	ENSMUSG00000050996	Cetn1	caltractin	centrin 1	protein-coding	0.856010035218327	1.50840311653855	3.01652716485425	1.7459292163997	1.11808993458238	0.968649966296603	2.73861190264188	1.40786498935867	-0.578282096075499	0.634686728564438	0.982417279970648
Merged-chr10-86065173-4	chr10	86065072	86065272	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013722, intron 10 of 13)	intron (NM_013722, intron 10 of 13)	-30682.0	NR_038024	78170.0	Mm.444790	NR_038024	ENSMUSG00000112493	4930486F22Rik	-	RIKEN cDNA 4930486F22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-147461829-2	chr4	147461729	147461929	+	837.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039209, intron 1 of 2)	intron (NM_001039209, intron 1 of 2)	-91448.0	NM_001014397	433804.0	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154	zinc finger protein 985	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-118147003-2	chr14	118146903	118147103	+	960.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021434, intron 2 of 8)	intron (NM_021434, intron 2 of 8)	9876.0	NM_021434	58245.0	Mm.275411	NM_021434	ENSMUSG00000022131	Gpr180	AB041545|E130016I23Rik|Itr	G protein-coupled receptor 180	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-86972506-2	chr17	86972406	86972606	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145491, intron 2 of 4)	intron (NM_145491, intron 2 of 4)	9395.0	NM_145491	104215.0	Mm.826	NM_145491	ENSMUSG00000024143	Rhoq	Arhq|TC10A|Tc10	ras homolog family member Q	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-152340657-1	chr3	152340557	152340757	+	871.0	f1_c57bl6.idr	promoter-TSS (NM_174868)	promoter-TSS (NM_174868)	-250.0	NM_001162375	215708.0	Mm.135018	NM_174868	ENSMUSG00000054942	Miga1	A930038D06|AI852168|C030011O14Rik|Fam73a|Mita1	mitoguardin 1	protein-coding	1.31810848435452	1.01598339221513	1.55776824563888	0.583292230415302	0.56998345684207	0.607123045549845	1.48187493518981	0.58492239886232	-1.17673594787985	0.477614202959405	0.927980290875356
Merged-chr2-12406886-4	chr2	12406787	12406987	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355537, intron 2 of 13)	intron (NM_001355537, intron 2 of 13)	12573.0	NM_001355537	66960.0	Mm.34059	NM_024185	ENSMUSG00000026767	Mindy3	1810041E18Rik|2310047O13Rik|5830410F13Rik|AI447827|AW111958|Fam188a	MINDY lysine 48 deubiquitinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-29673028-4	chr2	29672934	29673134	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054050, intron 1 of 23)	intron (NM_054050, intron 1 of 23)	53314.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-46819514-4	chr12	46819415	46819615	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021361)	promoter-TSS (NM_021361)	-740.0	NM_021361	664883.0	Mm.247195	NM_021361	ENSMUSG00000021047	Nova1	9430099M15Rik|G630039L02|Nova-1	neuro-oncological ventral antigen 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-93711153-4	chr16	93711074	93711274	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026700)	promoter-TSS (NM_026700)	-733.0	NM_026700	70028.0	Mm.23230	NM_026700	ENSMUSG00000022946	Dopey2	0610038M01Rik|2610510B01Rik|AI503246|C21orf5|mKIAA0933	dopey family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124742339-2	chr6	124742239	124742439	+	841.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_007881)	TTS (NM_007881)	-1260.0	NM_013535	14790.0	Mm.439877	NM_013535	ENSMUSG00000072772	Grcc10	2310033H05Rik|C10	gene rich cluster, C10 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-106138873-2	chr1	106138765	106138965	+	654.166626	f0_balb.idr|f0_c57.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	32659.0	NR_040630	626049.0	Mm.247410	NR_040630	ENSMUSG00000101583	Gm20753	-	predicted gene, 20753	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-11434451-1	chr16	11434351	11434551	+	708.0	f0_balb.idr	intron (NM_028964, intron 11 of 20)	intron (NM_028964, intron 11 of 20)	28803.0	NM_001290148	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-110888022-4	chr9	110887923	110888123	+	958.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153354, intron 8 of 25)	intron (NR_153354, intron 8 of 25)	7701.0	NM_001146060	235633.0	Mm.86338	NM_146228	ENSMUSG00000044037	Als2cl	79H19D|79H19E|BC022645|D930044G19Rik|mRn.49018	ALS2 C-terminal like	protein-coding	2.27854524710089	1.39128467007771	1.10157912801697	2.15364641857569	1.73199662307237	2.59817862155387	1.10740974779517	1.9507259355071	0.327520059996345	0.775325991639523	0.998431161219273
Merged-chr11-97432863-2	chr11	97432763	97432963	+	609.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17297.0	NM_021493	58996.0	Mm.394118	NM_021493	ENSMUSG00000049807	Arhgap23	A330041B18Rik	Rho GTPase activating protein 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-180172347-3	chr2	180172256	180172456	+	877.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019822, intron 2 of 9)	intron (NM_019822, intron 2 of 9)	768.0	NM_019822	56436.0	Mm.316654	NM_019822	ENSMUSG00000039041	Adrm1	1110063P18Rik|2510006J17Rik|AA408205|ARM-1|AU043535|Arm1|Gp110|Rpn13	adhesion regulating molecule 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-55944956-3	chr17	55944859	55945059	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310337, intron 1 of 3)	intron (NM_001310337, intron 1 of 3)	300.0	NM_146249	240120.0	Mm.441018	NM_146249	ENSMUSG00000062101	Zfp119b	-	zinc finger protein 119b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118614440-2	chr9	118614340	118614540	+	780.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 1 of 27)	intron (NM_133721, intron 1 of 27)	7731.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-87417129-6	chr14	87417055	87417255	+	991.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253755, intron 1 of 11)	CpG	572.0	NM_001253755	219249.0	Mm.35168	NM_172605	ENSMUSG00000022019	Tdrd3	4732418C03Rik|6720468N18	tudor domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83577231-4	chr11	83577126	83577326	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011338, intron 1 of 3)	intron (NM_011338, intron 1 of 3)	1410.0	NM_011338	20308.0	Mm.416125	NM_011338	ENSMUSG00000019122	Ccl9	CCF18|MRP-2|Scya10|Scya9	chemokine (C-C motif) ligand 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153263233-4	chr2	153263147	153263347	+	848.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080463, intron 6 of 6)	intron (NM_080463, intron 6 of 6)	21715.0	NM_080463	140484.0	Mm.293761	NM_080463	ENSMUSG00000046020	Pofut1	O-FucT-1|mKIAA0180	protein O-fucosyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-110782806-2	chr5	110782706	110782906	+	642.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2191.0	NM_001025562	56361.0	Mm.23528	NM_019700	ENSMUSG00000029507	Pus1	A730013B20Rik|MPUS1|mPus1p	pseudouridine synthase 1	protein-coding	-0.986117776978398	-1.33156256825259	-1.34133402424827	-1.34936058913999	-1.21427833167172	-1.32944505297573	-1.33912198079506	-1.34792383786197	-0.98711403806483	0.775821656509867	1
Merged-chr4-101652983-3	chr4	101652835	101653035	+	715.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175036, intron 2 of 3)	intron (NM_175036, intron 2 of 3)	5152.0	NM_175036	230514.0	Mm.4756	NM_175036	ENSMUSG00000035212	Leprot	LEPR|OB-RGRP|Obrgrp|VPS55	leptin receptor overlapping transcript	protein-coding	0.430794054754695	0.318083670835713	0.473482142059814	0.585452784415063	0.651757805636486	0.649486293196414	0.478045650765157	0.703201554235793	1.22583439899682	0.457526823002751	1
Merged-chr2-20943456-2	chr2	20943356	20943556	+	634.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001128084, intron 1 of 24)	intron (NM_001128084, intron 1 of 24)	24265.0	NM_001081364	71435.0	Mm.28507	NM_001081364	ENSMUSG00000036591	Arhgap21	5530401C11Rik|AA416458|ARHGAP10	Rho GTPase activating protein 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-89707673-4	chr16	89707579	89707779	+	926.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	110673.0	NM_001145887	21844.0	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-32162353-2	chr11	32162253	32162453	+	623.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37926.0	NM_001134458	16199.0	Mm.384	NM_008374	ENSMUSG00000020279	Il9r	-	interleukin 9 receptor	protein-coding	1.16307146886444	0.680444701807289	0.660994177534783	1.9825039367847	1.17556939960761	0.684734860888117	0.665344846218223	2.26346591261127	0.426576698174013	0.779282110624514	0.998431161219273
Merged-chr10-42634168-2	chr10	42634068	42634268	+	847.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44748.0	NM_172416	14628.0	Mm.46636	NM_172416	ENSMUSG00000038280	Ostm1	1200002H13Rik|HSPC019|gl	osteopetrosis associated transmembrane protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-110598081-2	chr13	110597981	110598181	+	722.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	203037.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-70161734-2	chr10	70161634	70161834	+	658.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111121, intron 3 of 8)	intron (NM_001111121, intron 3 of 8)	-42930.0	NM_001304739	69563.0	Mm.64672	NM_001304739	ENSMUSG00000019933	Mrln	2310015B20Rik|Linc-RAM|Mln	myoregulin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75032013-3	chr11	75031895	75032095	+	952.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001002764, intron 10 of 18)	intron (NM_001002764, intron 10 of 18)	33996.0	NR_030454	735274.0		NR_030454	ENSMUSG00000106252	Mir684-1	Mirn684-1	microRNA 684-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-20694175-4	chr18	20694082	20694282	+	987.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019737, intron 5 of 8)	intron (NM_019737, intron 5 of 8)	-28922.0	NR_155534	102633478.0		NR_155534	ENSMUSG00000085595	Gm16090	-	predicted gene 16090	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-98061309-4	chr3	98061259	98061459	+	834.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010928, intron 2 of 33)	intron (NM_010928, intron 2 of 33)	47821.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44482294-4	chr9	44482199	44482399	+	888.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357490)	promoter-TSS (NM_001357490)	-526.0	NM_001357490	80288.0	Mm.370270	NM_030256	ENSMUSG00000063382	Bcl9l	B9L|BC003321|BCL9-2|DLNB11	B cell CLL/lymphoma 9-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-85140172-4	chr11	85140068	85140268	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001029934)	promoter-TSS (NM_001029934)	-213.0	NM_001029934	237898.0	Mm.178524	NM_001029934	ENSMUSG00000000804	Usp32	2900074J03Rik|6430526O11Rik|AW045245	ubiquitin specific peptidase 32	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81365859-4	chr10	81365753	81365953	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001014836)	promoter-TSS (NM_001014836)	-33.0	NM_001014836	432479.0	Mm.440450	NM_001014836	ENSMUSG00000020234	4930404N11Rik	2210409H10Rik|5730551K18Rik|AI854616	RIKEN cDNA 4930404N11 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-41186177-3	chr12	41186070	41186270	+	688.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053122, intron 4 of 6)	intron (NM_053122, intron 4 of 6)	162080.0	NM_053122	93757.0	Mm.363813	NM_053122	ENSMUSG00000056899	Immp2l	AI853880|IMP2|Tg(HLA-A/H2-D)2Enge	IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-36911366-2	chr15	36911266	36911466	+	852.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	96036.0	NM_026521	68036.0	Mm.371631	NM_026521	ENSMUSG00000062397	Zfp706	3110006P09Rik|AA793007|AW536850|C77232|Znf706	zinc finger protein 706	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-57743530-4	chr6	57743427	57743627	+	933.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	41072.0	NM_133737	71835.0	Mm.274904	NM_133737	ENSMUSG00000062190	Lancl2	1700003F10Rik	LanC (bacterial lantibiotic synthetase component C)-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99798442-2	chr7	99798342	99798542	+	639.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29975.0	NM_016720	50877.0	Mm.103703	NM_016720	ENSMUSG00000035239	Neu3	-	neuraminidase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127287187-2	chr10	127287087	127287287	+	987.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347171, intron 3 of 12)	intron (NM_001347171, intron 3 of 12)	1831.0	NM_001347171	110962.0	Mm.372826	NM_033072	ENSMUSG00000025409	Mbd6	D10Wsu93e	methyl-CpG binding domain protein 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-66467446-1	chr18	66467346	66467546	+	801.0	f0_balb.idr	Intergenic	Lx6|LINE|L1	8842.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117883736-4	chr10	117883635	117883835	+	922.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-37761.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-142861189-4	chr2	142861081	142861281	+	958.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355123, intron 3 of 26)	intron (NM_001355123, intron 3 of 26)	40283.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-119724588-1	chr13	119724488	119724688	+	556.0	f0_balb.idr	intron (NM_175538, intron 2 of 3)	intron (NM_175538, intron 2 of 3)	31294.0	NM_175538	245269.0	Mm.403943	NM_175538	ENSMUSG00000095930	Nim1k	E130304F04Rik|Nim1	NIM1 serine/threonine protein kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-34049578-2	chr11	34049478	34049678	+	710.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010696, intron 1 of 20)	intron (NM_010696, intron 1 of 20)	2650.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3789408-2	chr4	3789308	3789508	+	646.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 12 of 12)	B4|SINE|B4	46247.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	0.650817298081665	1.2237930642612	1.29812001678504	1.25390586628285	0.653004030903586	0.687697562440371	1.42120614333736	1.14364949544596	-0.470613381900455	0.759242867680194	0.998431161219273
Merged-chr16-33879707-3	chr16	33879581	33879781	+	852.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 4 of 14)	L1MEd|LINE|L1	50016.0	NM_001145884	16419.0	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-96559337-2	chr13	96559237	96559437	+	771.416687	f1_balb.idr|f1_c57bl6.idr	intron (NM_023420, intron 2 of 17)	intron (NM_023420, intron 2 of 17)	16602.0	NM_023420	68018.0	Mm.24125	NM_023420	ENSMUSG00000021669	Col4a3bp	2810404O15Rik|9230101K08Rik|AU016711|CERT|GPBP	collagen, type IV, alpha 3 (Goodpasture antigen) binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83473070-4	chr11	83473013	83473213	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027427)	promoter-TSS (NM_027427)	5.0	NM_027427	70439.0	Mm.181050	NM_027427	ENSMUSG00000020680	Taf15	2610111C21Rik|68kDa|TAFII68|Taf2n	TATA-box binding protein associated factor 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-36074748-4	chr13	36074649	36074849	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201358, intron 2 of 2)	MTD|LTR|ERVL-MaLR	42608.0	NM_201358	380840.0	Mm.390576	NM_201358	ENSMUSG00000046573	Lyrm4	BC034664|Gm903	LYR motif containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97441648-4	chr6	97441534	97441734	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	17652.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67859089-2	chr10	67858989	67859189	+	795.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53573.0	NM_178679	216049.0	Mm.268346	NM_178679	ENSMUSG00000037855	Zfp365	AI839779|AV340892|DBZ|Su48|Znf365|talanin	zinc finger protein 365	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81405682-4	chr10	81405573	81405773	+	988.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026756, intron 7 of 8)	intron (NM_026756, intron 7 of 8)	-3902.0	NR_152732	102634174.0	Mm.392213	NR_152732	ENSMUSG00000085327	Gm16104	-	predicted gene 16104	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-81575459-2	chr17	81575359	81575559	+	769.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 2 of 8)	intron (NR_104580, intron 2 of 8)	162928.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-142538735-3	chr6	142538643	142538843	+	741.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30786.0	NM_001316322	16832.0	Mm.9745	NM_008492	ENSMUSG00000030246	Ldhb	AI790582|H-Ldh|LDH-B|LDH-H|Ldh-2|Ldh2	lactate dehydrogenase B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-62590367-4	chr10	62590255	62590455	+	992.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019553, intron 7 of 14)	intron (NM_019553, intron 7 of 14)	-11898.0	NM_028197	72320.0	Mm.258955	NM_028197	ENSMUSG00000036955	Kif1bp	0710007C18Rik|2510003E04Rik|KBP|mKIAA1279	KIF1 binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-23684094-4	chr13	23684004	23684204	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178189)	promoter-TSS (NM_178189)	-95.0	NM_001290380	68024.0	Mm.261676	NM_023422	ENSMUSG00000018102	Hist1h2bc	2610022J01Rik|H2bfs|R74621	histone cluster 1, H2bc	protein-coding	-1.32440223303897	-1.29339468673833	-0.717877708899544	-1.31276353204239	-1.32392690786997	-1.29109028300231	-1.30162128075409	-1.31119997543009	-2.49510383040271	0.470258445164311	1
Merged-chr15-77343586-3	chr15	77343487	77343687	+	903.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36534.0	NM_053104	93686.0	Mm.202774	NM_053104	ENSMUSG00000033565	Rbfox2	Fbm2|Fxh|Hrnbp2|Rbm9	RNA binding protein, fox-1 homolog (C. elegans) 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-154878024-4	chr4	154877924	154878124	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013783, intron 2 of 23)	ORR1E|LTR|ERVL-MaLR	-6021.0	NR_154548	102634887.0	Mm.72944	NR_154548		Gm13112	-	predicted gene 13112	ncRNA	5.79161201653098	5.30547078183043	3.91352427923274	4.70291176226719	5.79583082426311	5.65583775682075	4.90979997929474	5.53702646827289	0.474189528265952	0.215286162403157	0.705944860566832
Merged-chr1-150015556-3	chr1	150015472	150015672	+	735.75	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-54282.0	NM_008869	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-25272611-2	chr17	25272511	25272711	+	804.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001177609, exon 2 of 8)	5' UTR (NM_001177609, exon 2 of 8)	820.0	NM_001177610	22196.0	Mm.240044	NM_011665	ENSMUSG00000015120	Ube2i	5830467E05Rik|UBC9|Ubce2i|Ubce9	ubiquitin-conjugating enzyme E2I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-54388990-3	chr14	54388891	54389091	+	582.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011405, intron 4 of 11)	L2|LINE|L2	20481.0	NM_001253680	20540.0	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	-0.433697702284369	-0.774891922301519	-0.777611026386862	-0.779697408596106	-0.425847201463438	-0.773998111983558	-0.777012746634502	-0.62395897287644	0.501296798616922	0.860093823500213	1
Merged-chr8-121577945-4	chr8	121577831	121578031	+	787.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133765, intron 1 of 8)	intron (NM_133765, intron 1 of 8)	875.0	NM_133765	76454.0	Mm.24829	NM_133765	ENSMUSG00000052934	Fbxo31	1110003O08Rik|2310046N15Rik|Fbx14|Fbxo14	F-box protein 31	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-25620879-2	chr2	25620779	25620979	+	554.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001040130, intron 4 of 4)	intron (NM_001040130, intron 4 of 4)	1123.0	NM_001040130	51875.0	Mm.271147	NM_001040130	ENSMUSG00000026939	Tmem141	1110065P14Rik|AI663999|D2Ertd217e	transmembrane protein 141	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122547534-4	chr5	122547400	122547600	+	945.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45275.0	NR_027838	11938.0	Mm.227583	NM_009722	ENSMUSG00000029467	Atp2a2	9530097L16Rik|D5Wsu150e|SERCA2|SERCA2B|Serca2a|mKIAA4195	ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	protein-coding	2.57055944734405	2.39321538731579	2.9641719553687	2.7081102135281	2.59179981199842	1.55241324607983	3.14182953197448	2.51457815511298	-0.196671836072185	0.807178435246753	0.998431161219273
Merged-chr5-107717478-2	chr5	107717378	107717578	+	963.75	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010278, exon 6 of 6)	3' UTR (NM_010278, exon 6 of 6)	6865.0	NM_010278	14581.0	Mm.2078	NM_010278	ENSMUSG00000029275	Gfi1	AW495828|Gfi-1|Pal-1|Pal1	growth factor independent 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-147526829-2	chr4	147526729	147526929	+	879.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26448.0	NM_001014397	433804.0	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154	zinc finger protein 985	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-18263659-1	chr14	18263559	18263759	+	580.0	f0_balb.idr	Intergenic	Intergenic	7322.0	NM_001359897	66480.0	Mm.2050	NM_025586	ENSMUSG00000012405	Rpl15	2510008H07Rik	ribosomal protein L15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-108446380-2	chr3	108446280	108446480	+	820.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-1121.0	NM_001204979	20226.0	Mm.28688	NM_011319	ENSMUSG00000068739	Sars	Sars1|Strs|serRS	seryl-aminoacyl-tRNA synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65215139-4	chr9	65215024	65215224	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177460, intron 1 of 6)	intron (NM_177460, intron 1 of 6)	434.0	NM_177460	214424.0	Mm.31129	NM_177460	ENSMUSG00000032392	Parp16	ARTD15|BC055447|C79952|PARP-16	poly (ADP-ribose) polymerase family, member 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-79842370-2	chr12	79842270	79842470	+	748.099976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	82363.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-66916605-4	chr9	66916492	66916692	+	820.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173413, intron 1 of 7)	AmnSINE1|SINE|Deu	3113.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-25242569-4	chr12	25242472	25242672	+	885.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	113398.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	3.32926624062376	4.17604923539762	3.44832284383529	2.55035460729216	3.83064963548856	3.50325141487326	2.47957200870236	3.95966391917968	0.0979991380982437	0.874901102699039	0.998431161219273
Merged-chr4-141157633-4	chr4	141157441	141157641	+	960.3273929999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172518, intron 1 of 9)	B1F|SINE|Alu	9619.0	NM_172518	213499.0	Mm.28865	NM_172518	ENSMUSG00000028920	Fbxo42	6720460I06Rik|mKIAA1332	F-box protein 42	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-25038710-4	chr16	25038617	25038817	+	894.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20922.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46511436-4	chr19	46511336	46511536	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053100, intron 1 of 5)	intron (NM_053100, intron 1 of 5)	9788.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	-1.84371485578039	-1.81332821174849	-1.82251738371298	-1.83006564316449	-1.84158176955426	-1.81133687985023	-1.5312619047181	-1.82871450833159	1.60090129203521	0.64914985597185	1
Merged-chr14-56778449-4	chr14	56778412	56778612	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360420)	promoter-TSS (NM_001360420)	-194.0	NM_025682	66645.0	Mm.20129	NM_025682	ENSMUSG00000021938	Pspc1	5730470C09Rik|AI327109|AI449052|PSP1	paraspeckle protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-132296741-4	chr1	132296629	132296829	+	782.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14|LTR|ERV1	-1897.0	NM_144810	213417.0	Mm.39723	NM_144810	ENSMUSG00000042115	Klhdc8a	A630065K24Rik	kelch domain containing 8A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-57244062-2	chr16	57243963	57244163	+	976.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12597.0	NM_001358433	67581.0	Mm.257819	NM_026254	ENSMUSG00000022749	Tbc1d23	4930451A13Rik|AU015720|AU043671|AU043778|D030022P07Rik|W51689	TBC1 domain family, member 23	protein-coding	2.34102983000613	2.6455122174098	1.1882048181699	2.55731937120367	1.97180475796145	2.57158488562867	1.19533640977445	1.41778234883076	-0.902478332640135	0.40246865578243	0.887977001117615
Merged-chr14-105232635-4	chr14	105232540	105232740	+	920.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26033.0	NM_029561	76273.0	Mm.290669	NM_029561	ENSMUSG00000053253	Ndfip2	0710001O20Rik|2810436B12Rik|9130207N19Rik|N4wbp5a|mKIAA1165	Nedd4 family interacting protein 2	protein-coding	-0.662826441749988	-1.00555184936033	-1.01675512286785	-1.01992432642343	-0.654846858003193	-1.00312405325568	-1.01421894731451	-1.01959449741028	0.0418081237259606	0.989738874530268	1
Merged-chr8-19980011-4	chr8	19979908	19980108	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001270553, intron 6 of 9)	CpG	250432.0	NM_001039553	626415.0	Mm.425517	NM_001039553	ENSMUSG00000096265	4930467E23Rik	TSAP	RIKEN cDNA 4930467E23 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-78095319-4	chr10	78095215	78095415	+	895.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25947.0	NM_015790	50723.0	Mm.17819	NM_015790	ENSMUSG00000000732	Icosl	AU044799|B7-H2|B7RP-1|B7h|BG071784|GI50|GL50|GL50-B|ICOS-L|Icoslg|LICOS|Ly115l|mKIAA0653	icos ligand	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-77172682-3	chr5	77172583	77172783	+	898.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38522.0	NM_001289767	69982.0	Mm.46106	NM_183284	ENSMUSG00000053030	Spink2	1700007F22Rik|AV038945|HUSI-II	serine peptidase inhibitor, Kazal type 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-105369059-4	chr11	105368941	105369141	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172568, intron 10 of 11)	intron (NM_172568, intron 10 of 11)	76395.0	NM_008626	17534.0	Mm.235616	NM_008626	ENSMUSG00000020695	Mrc2	Endo180|mKIAA0709|uPARAP	mannose receptor, C type 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-112252358-1	chr7	112252258	112252458	+	776.666687	f0_balb.idr	intron (NM_001193305, intron 2 of 25)	intron (NM_001193305, intron 2 of 25)	26522.0	NM_001193305	320878.0	Mm.52312	NM_177282	ENSMUSG00000038244	Mical2	5330438E18Rik|9530064J02|MICAL-2|mKIAA0750	microtubule associated monooxygenase, calponin and LIM domain containing 2	protein-coding	1.34203637823838	1.0352300443044	1.01191988124437	1.22383547549377	1.85479573562188	2.10583111611727	2.13214683516118	2.38633819926217	3.4499154055096	0.00537851700909371	0.0706548690603354
Merged-chr11-61949554-2	chr11	61949454	61949654	+	864.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7209.0	NM_001281818	432572.0	Mm.438022	NM_001029936	ENSMUSG00000042331	Specc1	2810012G08Rik|B230396K10Rik|Cytsb	sperm antigen with calponin homology and coiled-coil domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-26638031-4	chr14	26637929	26638129	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007479)	promoter-TSS (NM_007479)	-105.0	NM_007479	11843.0	Mm.297768	NM_007479	ENSMUSG00000021877	Arf4	AA407803	ADP-ribosylation factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97632151-4	chr11	97632056	97632256	+	998.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2440.0	NM_175332	103551.0	Mm.24506	NM_175332	ENSMUSG00000043439	Epop	AA409164|AI413509|AW539173|E13|E130012A19Rik|esPRC2p48	elongin BC and polycomb repressive complex 2 associated protein	protein-coding	4.43426698698277	4.1929224320468	4.43437760882124	3.21695261288279	3.65326540833561	3.57574570898204	3.45213903094908	4.66443788506036	-0.287635646023907	0.575203202502161	0.965286201225318
Merged-chr1-39493831-4	chr1	39493729	39493929	+	997.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	HAL1|LINE|L1	-15074.0	NM_001357521	54610.0	Mm.387293	NM_018775	ENSMUSG00000003134	Tbc1d8	AD3|HBLP1|VRP	TBC1 domain family, member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47743208-2	chr17	47743101	47743301	+	955.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161723, intron 1 of 8)	B3|SINE|B2	5270.0	NM_001161723	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	1.42141256421731	0.80653485769758	1.17284691872643	0.976965525260325	1.43493654554885	1.84578678686912	1.33115688028996	0.78396505307254	1.12742957089759	0.407462884055906	0.891845785649541
Merged-chr7-141069794-1	chr7	141069694	141069894	+	540.0	f1_balb.idr	intron (NM_177897, intron 14 of 19)	intron (NM_177897, intron 14 of 19)	-8435.0	NM_001162924	56460.0	Mm.350037	NM_019762	ENSMUSG00000054065	Pkp3	2310056L12Rik	plakophilin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-91093363-3	chr13	91093268	91093468	+	753.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025770, intron 3 of 7)	intron (NM_025770, intron 3 of 7)	130619.0	NM_025770	66795.0	Mm.235385	NM_025770	ENSMUSG00000021619	Atg10	5330424L23Rik|5430428K15Rik|AI852123|APG10|Agp10|Apg10l|Apg10p|Atg10l	autophagy related 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-160333256-1	chr2	160333156	160333356	+	550.0	f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-5762.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	-1.20406370813143	-1.56956373024278	-1.57884638916872	-1.58647144159385	-1.598104728449	-1.56755213932999	-1.57674499865798	-1.58510656085539	-1.70745470802464	0.626337835847419	1
Merged-chr11-51818433-4	chr11	51818309	51818509	+	898.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357588, intron 12 of 12)	intron (NM_001357588, intron 12 of 12)	39072.0	NM_199299	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-6359364-3	chr7	6359264	6359464	+	946.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3944.0	NM_001025163	330463.0	Mm.136456	NM_177888	ENSMUSG00000055150	Zfp78	A330079D15|KRAB12|Zfp77	zinc finger protein 78	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-43424684-3	chr10	43424587	43424787	+	982.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168289, intron 7 of 7)	intron (NM_001168289, intron 7 of 7)	-54453.0	NM_199028	331623.0	Mm.490388	NM_199028	ENSMUSG00000038214	Bend3	mKIAA1553	BEN domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47883305-3	chr17	47883216	47883416	+	962.4111330000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028767, intron 3 of 16)	intron (NM_028767, intron 3 of 16)	41316.0	NM_028767	74123.0	Mm.240062	NM_028767	ENSMUSG00000023991	Foxp4	1200010K03Rik|2310007G05Rik|mFKHLA	forkhead box P4	protein-coding	1.31741756425438	0.907743152799443	0.892081849175191	1.08020612961284	1.72875145741415	1.75970524601219	1.44395185714565	1.82803155291084	2.60091715250726	0.0463115263384109	0.310926759436982
Merged-chr5-24841199-3	chr5	24841048	24841248	+	860.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053075, intron 1 of 7)	intron (NM_053075, intron 1 of 7)	1213.0	NM_053075	19744.0	Mm.319175	NM_053075	ENSMUSG00000028945	Rheb	Rheb1	Ras homolog enriched in brain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-53870926-3	chr1	53870891	53871091	+	800.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001883, intron 17 of 28)	MTB_Mm-int|LTR|ERVL-MaLR	21567.0	NR_106149	102465783.0		NR_106149	ENSMUSG00000098443	Mir7681	Gm27806|mmu-mir-7681	microRNA 7681	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-79549635-4	chr14	79549537	79549737	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007920, intron 2 of 8)	intron (NM_007920, intron 2 of 8)	33963.0	NM_001286411	13709.0	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-31007942-3	chr7	31007834	31008034	+	875.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26013.0	NM_001242647	76415.0	Mm.259739	NM_175240	ENSMUSG00000046826	Fam187b	1700020B09Rik|Tmem162	family with sequence similarity 187, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-86433351-2	chr1	86433251	86433451	+	625.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	7022.0	NM_027966	71863.0	Mm.179627	NM_027966	ENSMUSG00000036574	Tex44	1700019O17Rik	testis expressed 44	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78983553-4	chr15	78983459	78983659	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024716, intron 1 of 13)	intron (NM_001024716, intron 1 of 13)	503.0	NM_001024716	110253.0	Mm.123714	NM_138579	ENSMUSG00000033088	Triobp	AI428493|EST478828|Tara|mKIAA1662	TRIO and F-actin binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-116268078-3	chr8	116267968	116268168	+	976.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-236947.0	NM_029297	75465.0	Mm.23114	NM_029297	ENSMUSG00000034467	Dynlrb2	1700009A04Rik|DNLC2B|Dncl2b	dynein light chain roadblock-type 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-28560281-2	chr4	28560181	28560381	+	684.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-252850.0	NM_001290434	13841.0	Mm.257266	NM_010141	ENSMUSG00000028289	Epha7	Cek11|Ebk|Ehk3|Hek11|Mdk1	Eph receptor A7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102252734-4	chr12	102252634	102252834	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172152, intron 12 of 16)	intron (NM_172152, intron 12 of 16)	-30340.0	NM_177620	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180942402-4	chr1	180942276	180942476	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144794)	promoter-TSS (NM_144794)	-142.0	NM_144794	208795.0	Mm.185518	NM_144794	ENSMUSG00000026519	Tmem63a	BC014795|Tmem64a	transmembrane protein 63a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-65615493-2	chr17	65615393	65615593	+	580.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-1938.0	NM_013933	30960.0	Mm.266767	NM_013933	ENSMUSG00000024091	Vapa	33kDa|VAP33	vesicle-associated membrane protein, associated protein A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-4943421-4	chr7	4943297	4943497	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173008, intron 13 of 13)	intron (NM_173008, intron 13 of 13)	17553.0	NM_173008	269855.0	Mm.44190	NM_173008	ENSMUSG00000035279	Ssc5d	A430110N23Rik|S5D-SRCRB	scavenger receptor cysteine rich family, 5 domains	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-127168507-3	chr4	127168417	127168617	+	858.2666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198618)	promoter-TSS (NM_198618)	-687.0	NM_198618	242667.0	Mm.331885	NM_198618	ENSMUSG00000042388	Dlgap3	BC058433|DAP-3|DAP3|Prpl8|Sapap3	DLG associated protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-107953513-3	chr3	107953408	107953608	+	805.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9759.0	NM_008184	14867.0	Mm.458154	NM_008184	ENSMUSG00000068762	Gstm6	-	glutathione S-transferase, mu 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-32221802-11	chr11	32221617	32221817	+	934.7727050000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010117, intron 1 of 17)	CpG	576.0	NM_010117	13650.0	Mm.11545	NM_010117	ENSMUSG00000020282	Rhbdf1	C16ORF8|Dist|Dist1|Egfr-rs|mKIAA4242	rhomboid 5 homolog 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-83400930-3	chr9	83400810	83401010	+	776.244446	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029434, intron 4 of 7)	GA-rich|Low_complexity|Low_complexity	-30637.0	NR_102437	100039186.0	Mm.212721	NR_102437	ENSMUSG00000099718	Gm2087	-	predicted gene 2087	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128437275-3	chr2	128437162	128437362	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB5|LINE|L1	-7911.0	NR_028590	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	3.72754915415895	2.75554252570283	1.69682560500112	2.85718900415626	4.29085660449827	4.91465158279987	5.08642147695021	3.82239266966875	2.29511902400824	9.73524957801534e-05	0.00304175844888094
Merged-chr2-163787893-4	chr2	163787797	163787997	+	862.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32937.0	NM_016873	22403.0	Mm.13828	NM_016873	ENSMUSG00000027656	Wisp2	Ccn5|Crgr4|Ctgfl|Rcop1	WNT1 inducible signaling pathway protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-44657630-4	chr10	44657380	44657580	+	795.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER121|DNA|TcMar?	-198732.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59743073-4	chr15	59742963	59743163	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51896.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-67269123-4	chr13	67269040	67269240	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_155551)	promoter-TSS (NR_155551)	-72.0	NM_001001152	238690.0	Mm.306358	NM_001001152	ENSMUSG00000055480	Zfp458	BC062958|Gm33446|Rslcan-7|Znf728|mszf59-2	zinc finger protein 458	protein-coding	3.24278047820107	3.39411172292975	2.51544153445601	2.82401721907115	3.13281124277911	3.64372033619341	2.53550888185725	2.83865919569818	0.10843679122663	0.869216084364268	0.998431161219273
Merged-chr5-21295849-4	chr5	21295741	21295941	+	921.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029195, intron 17 of 18)	intron (NM_029195, intron 17 of 18)	-76832.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-12565776-4	chr13	12565674	12565874	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026184)	promoter-TSS (NM_026184)	-109.0	NM_026184	67475.0	Mm.358706	NM_026184	ENSMUSG00000057069	Ero1lb	1300013B24Rik|1700065B09Rik|AI447560|Ero1b|ero1-beta	ERO1-like beta (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-138280981-2	chr5	138280881	138281081	+	899.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016964, intron 1 of 33)	intron (NM_016964, intron 1 of 33)	472.0	NM_016964	50878.0	Mm.285609	NM_016964	ENSMUSG00000036928	Stag3	SA-2	stromal antigen 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-76140479-5	chr5	76140367	76140567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_020611, exon 1 of 6)	exon (NM_020611, exon 1 of 6)	194.0	NM_020611	57357.0	Mm.289446	NM_020611	ENSMUSG00000029233	Srd5a3	1110025P14Rik|A430076C09|AV364670|AW987574|D730040M03Rik|H5ar|S5AR 3|Srd5a2l	steroid 5 alpha-reductase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-27193518-3	chr3	27193367	27193567	+	976.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 1 of 4)	intron (NM_178772, intron 1 of 4)	10463.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-51931407-2	chr2	51931307	51931507	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355608, intron 1 of 3)	intron (NM_001355608, intron 1 of 3)	1928.0	NM_001355607	71684.0	Mm.28309	NM_030243	ENSMUSG00000036249	Rbm43	0610033I05Rik	RNA binding motif protein 43	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-40687528-7	chr19	40687526	40687726	+	948.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009848, intron 1 of 9)	intron (NM_009848, intron 1 of 9)	27856.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	2.08391428868952	1.76257275917605	2.73111138497179	2.55604076388527	2.10121064027201	3.11314334233429	2.2774888410766	2.99304823076752	0.732700299250976	0.37101699525369	0.863911489096448
Merged-chr11-34002400-4	chr11	34002292	34002492	+	775.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155520, intron 4 of 4)	intron (NR_155520, intron 4 of 4)	-9199.0	NM_001190886	70357.0	Mm.252514	NM_027398	ENSMUSG00000053519	Kcnip1	KCHIP1|Kchip1.2	Kv channel-interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-25807465-2	chr6	25807365	25807565	+	722.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_133931, intron 1 of 17)	intron (NM_133931, intron 1 of 17)	1761.0	NM_133931	101185.0	Mm.274589	NM_133931	ENSMUSG00000029676	Pot1a	1500031H18Rik|AI851169|Pot1	protection of telomeres 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-11192947-4	chr2	11192837	11193037	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008859, intron 1 of 17)	intron (NM_008859, intron 1 of 17)	20555.0	NM_008859	18761.0	Mm.329993	NM_008859	ENSMUSG00000026778	Prkcq	A130035A12Rik|AW494342|PKC-0|PKC-theta|PKCtheta|Pkcq	protein kinase C, theta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-47917867-4	chr8	47917770	47917970	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133791, intron 2 of 22)	intron (NM_133791, intron 2 of 22)	72681.0	NM_133791	52357.0	Mm.235074	NM_133791	ENSMUSG00000031563	Wwc2	5330431C14Rik|AU022508|C85457|D8Ertd594e	WW, C2 and coiled-coil domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-49755622-4	chr18	49755507	49755707	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001170960)	promoter-TSS (NM_001170960)	-6.0	NM_026854	68857.0	Mm.96010	NM_026854	ENSMUSG00000024505	Dtwd2	1190002H09Rik|8030470C17Rik|AI414673|BB115449	DTW domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-17916695-3	chr14	17916604	17916804	+	915.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113417, intron 2 of 9)	intron (NM_001113417, intron 2 of 9)	-64940.0	NM_009380	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-81123651-4	chr3	81123557	81123757	+	903.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019971, intron 1 of 5)	intron (NM_019971, intron 1 of 5)	87241.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-75902132-2	chr18	75902063	75902263	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145356, intron 2 of 4)	intron (NM_145356, intron 2 of 4)	81985.0	NM_145356	207259.0	Mm.159332	NM_145356	ENSMUSG00000044646	Zbtb7c	B230208J24Rik|Kr-pok|Zbtb36	zinc finger and BTB domain containing 7C	protein-coding	2.88040997122073	2.87632883934609	4.14833172466892	1.9849802573305	2.19594093120356	3.00646540907642	1.30350108067973	1.25569850230369	-1.91154395506625	0.0392976690403327	0.282027223411168
Merged-chr15-36282111-3	chr15	36282000	36282200	+	941.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357631, intron 1 of 7)	intron (NM_001357631, intron 1 of 7)	1047.0	NM_013923	30945.0	Mm.5181	NM_013923	ENSMUSG00000022280	Rnf19a	AA032313|Dorfin|Rnf19|UIP117|Ubce7ip2|XYbp	ring finger protein 19A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-180745434-4	chr2	180745356	180745556	+	998.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20117.0	NM_183161	228993.0	Mm.87189	NM_183161	ENSMUSG00000023393	Slc17a9	1700019H03Rik|BC019537|Vnut	solute carrier family 17, member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-66242472-1	chr14	66242372	66242572	+	781.0	f0_balb.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	-28648.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-54209635-4	chr13	54209564	54209764	+	942.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153432, intron 1 of 3)	intron (NR_153432, intron 1 of 3)	17531.0	NR_153432	15466.0	Mm.57243	NM_008286	ENSMUSG00000034987	Hrh2	H2R|HH2R	histamine receptor H2	protein-coding	3.22151320888434	2.21460304907567	1.94145412071515	3.06892690348259	2.69332743356307	1.78759542342042	3.71586878038892	1.89403024880352	0.103994660263239	0.903912533057137	0.998431161219273
Merged-chr6-113750282-4	chr6	113750246	113750446	+	964.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001036684, intron 19 of 19)	intron (NM_001036684, intron 19 of 19)	-9665.0	NM_024206	110379.0	Mm.29296	NM_024206	ENSMUSG00000030298	Sec13	1110003H02Rik|Sec13l1|Sec13r	SEC13 homolog, nuclear pore and COPII coat complex component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-61713392-2	chr2	61713292	61713492	+	872.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_021526, intron 1 of 11)	PB1D7|SINE|Alu	1698.0	NM_021526	59029.0	Mm.218198	NM_021526	ENSMUSG00000026914	Psmd14	2610312C03Rik|3200001M20Rik|AA986732|Pad1|Poh1|rpm11	proteasome (prosome, macropain) 26S subunit, non-ATPase, 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-3079438-2	chr17	3079335	3079535	+	917.099976	f0_balb.idr|f1_balb.idr	non-coding (NR_003519, exon 3 of 8)	non-coding (NR_003519, exon 3 of 8)	4748.0	NR_003519	328734.0	Mm.335641	NR_003519		Pisd-ps2	D030013I16Rik	phosphatidylserine decarboxylase, pseudogene 2	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-42537467-2	chr13	42537367	42537567	+	545.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-143332.0	NM_001302635	218194.0	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91167103-1	chr16	91167003	91167203	+	550.0	f1_c57bl6.idr	Intergenic	Intergenic	-58447.0	NM_016967	50913.0	Mm.37289	NM_016967	ENSMUSG00000039830	Olig2	AI604895|Bhlhb1|Olg-2|Oligo2|RK17|bHLHe19	oligodendrocyte transcription factor 2	protein-coding	0.724489129440453	0.349577819806372	0.341682929291918	1.08977874353047	0.617050872145064	0.351350816106655	0.343428427589602	1.09873332409545	-0.117724662392291	0.949304629821669	1
Merged-chr7-88250579-4	chr7	88250483	88250683	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3A|LINE|L1	-27502.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99953852-1	chr7	99953752	99953952	+	838.0	f0_balb.idr	intron (NM_175388, intron 2 of 5)	intron (NM_175388, intron 2 of 5)	26606.0	NM_175388	108937.0	Mm.323087	NM_175388	ENSMUSG00000058761	Rnf169	2900057K09Rik	ring finger protein 169	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-5705169-4	chr13	5705066	5705266	+	633.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	152926.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-112220455-2	chr5	112220355	112220555	+	828.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_033657, intron 6 of 6)	intron (NR_033657, intron 6 of 6)	8493.0	NR_033657	330166.0	Mm.44854	NR_003718	ENSMUSG00000097767	Miat	3632434I06|A230057G18Rik|Rncr2|gomafu	myocardial infarction associated transcript (non-protein coding)	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-21053807-3	chr19	21053712	21053912	+	929.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50898.0	NR_126458	75354.0	Mm.243873	NR_126458		4930554I06Rik	-	RIKEN cDNA 4930554I06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-42633394-2	chr10	42633294	42633494	+	886.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45522.0	NM_172416	14628.0	Mm.46636	NM_172416	ENSMUSG00000038280	Ostm1	1200002H13Rik|HSPC019|gl	osteopetrosis associated transmembrane protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-27927161-3	chr15	27927043	27927243	+	771.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081302, intron 1 of 56)	intron (NM_001081302, intron 1 of 56)	98705.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-135280860-3	chr1	135280744	135280944	+	683.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159624, intron 1 of 9)	MLTR31A_MM|LTR|ERVK	3240.0	NM_145417	215615.0	Mm.291048	NM_145417	ENSMUSG00000041926	Rnpep	-	arginyl aminopeptidase (aminopeptidase B)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141385441-3	chr4	141385390	141385590	+	744.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024412, intron 18 of 19)	intron (NM_024412, intron 18 of 19)	12609.0	NM_001146307	12733.0	Mm.167900	NM_024412	ENSMUSG00000033770	Clcnka	C75963|CLC-K1|Clcnk1	chloride channel, voltage-sensitive Ka	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-49743254-2	chr2	49743154	49743354	+	740.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008449, intron 19 of 25)	intron (NM_008449, intron 19 of 25)	-44432.0	NM_027990	71897.0	Mm.41381	NM_027990	ENSMUSG00000026765	Lypd6b	2310010M24Rik|AW049525	LY6/PLAUR domain containing 6B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-75782656-4	chr7	75782560	75782760	+	926.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65678.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97364001-1	chr6	97363901	97364101	+	541.0	f1_balb.idr	intron (NM_145148, intron 6 of 23)	intron (NM_145148, intron 6 of 23)	95285.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-150827345-2	chr2	150827245	150827445	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153781, intron 17 of 19)	intron (NM_153781, intron 17 of 19)	15225.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-20748843-2	chr13	20748743	20748943	+	714.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45270.0	NM_001281854	27052.0	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122556248-4	chr8	122556206	122556406	+	844.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4977.0	NM_001357349	234839.0	Mm.37324	NM_001037298	ENSMUSG00000014444	Piezo1	9630020g22|Fam38a|mKIAA0233	piezo-type mechanosensitive ion channel component 1	protein-coding	2.11340717710345	2.10568113648655	2.22194331826873	1.85981985905599	1.22015714137199	1.08778550398474	1.06562771700986	1.74916484962845	-2.49605114035512	0.0312004982706647	0.243457282903795
Merged-chr7-28771079-2	chr7	28770979	28771179	+	694.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_022432, intron 2 of 15)	intron (NM_022432, intron 2 of 15)	4327.0	NM_001122766	64383.0	Mm.272443	NM_022432	ENSMUSG00000015149	Sirt2	5730427M03Rik|SIR2L2|Sir2l	sirtuin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-40378935-2	chr1	40378835	40379035	+	821.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50635.0	NM_001294171	17082.0	Mm.289824	NM_010743	ENSMUSG00000026069	Il1rl1	DER4|Fit-1|Ly84|ST2L|St2|St2-rs1|T1|T1/ST2	interleukin 1 receptor-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-15818836-2	chr6	15818736	15818936	+	752.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	98175.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36282126-3	chr18	36282080	36282280	+	625.211121	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008989, intron 1 of 1)	intron (NM_008989, intron 1 of 1)	1018.0	NM_008989	19290.0	Mm.231802	NM_008989	ENSMUSG00000043991	Pura	CAGER-1|Pur-alpha|ssCRE-BP	purine rich element binding protein A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-57893470-6	chr15	57893400	57893600	+	946.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR65|LTR|ERV1	-1082.0	NM_024207	67819.0	Mm.289387	NM_024207	ENSMUSG00000022365	Derl1	1110021N07Rik|AI195141|AW551338|Derlin-1	Der1-like domain family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-107921584-4	chr5	107921467	107921667	+	967.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026062, intron 2 of 4)	intron (NM_026062, intron 2 of 4)	21039.0	NM_016980	100503670.0	Mm.277897	NM_016980	ENSMUSG00000058558	Rpl5	U21RNA	ribosomal protein L5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-59753716-3	chr4	59753629	59753829	+	787.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001015681, exon 4 of 4)	3' UTR (NM_001015681, exon 4 of 4)	30126.0	NM_001013577	66209.0	Mm.51988	NM_001013577	ENSMUSG00000038544	Inip	1110054O05Rik|2610312O17Rik|AA399876|Ssbip1	INTS3 and NABP interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-33944891-3	chr8	33944790	33944990	+	754.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1L-int|LTR|ERVL-MaLR	-15027.0	NM_001042675	19663.0	Mm.323997	NM_019733	ENSMUSG00000031586	Rbpms	2010300K22Rik|2700019M19Rik|AU017537|RBP-MS|hermes	RNA binding protein gene with multiple splicing	protein-coding	1.74419146304347	1.63671157636981	2.02036734096688	2.07057571093953	1.30836688579814	1.82476788685973	2.65994435016822	1.3618088836912	0.137769001589304	0.89461531293217	0.998431161219273
Merged-chr9-21313411-4	chr9	21313306	21313506	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1073.0	NM_009678	11768.0	Mm.22239	NM_009678	ENSMUSG00000003309	Ap1m2	D9Ertd818e|[m]1B|mu1B	adaptor protein complex AP-1, mu 2 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-6086008-4	chr2	6085840	6086040	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44245.0	NM_144883	227545.0	Mm.133542	NM_144883	ENSMUSG00000045319	Proser2	5430407P10Rik|AU067770	proline and serine rich 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-99225439-2	chr4	99225408	99225608	+	744.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175029, intron 7 of 10)	Charlie12|DNA|hAT-Charlie	31361.0	NM_001145967	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	-0.583449067377857	-1.02282152578373	-1.03400008326803	-1.03822883962362	-0.777224525718346	-1.02039908574442	-1.03146950288059	-1.03789690212328	-0.791518325477985	0.808258493497815	1
Merged-chr5-113594575-4	chr5	113594484	113594684	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44164.0	NM_177292	320916.0	Mm.102783	NM_177292	ENSMUSG00000063430	Wscd2	4933413A10Rik|C530024P05Rik|Gm450	WSC domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-79571604-2	chr3	79571504	79571704	+	675.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_152118, intron 1 of 1)	Lx3A|LINE|L1	3412.0	NR_152118	75879.0	Mm.410800	NR_152118		4930589L23Rik	-	RIKEN cDNA 4930589L23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-5423265-2	chr5	5423165	5423365	+	663.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43014.0	NM_011074	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-104523784-4	chr3	104523667	104523867	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11849.0	NM_001310698	269473.0	Mm.34855	NM_001025067	ENSMUSG00000032913	Lrig2	4632419I10Rik|BB096938|LIG-2	leucine-rich repeats and immunoglobulin-like domains 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-106612282-1	chr8	106612182	106612382	+	858.0	f0_balb.idr	intron (NM_009864, intron 2 of 15)	ID2|SINE|ID	8932.0	NM_009864	12550.0	Mm.35605	NM_009864	ENSMUSG00000000303	Cdh1	AA960649|ARC-1|E-cad|Ecad|L-CAM|UVO|Um	cadherin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-59342669-4	chr3	59342563	59342763	+	833.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162884, intron 1 of 6)	L1_Mm|LINE|L1	1593.0	NM_001162884	242050.0	Mm.228086	NM_001162884	ENSMUSG00000036334	Igsf10	6530405F15Rik|9030224D03|AA409708|AA536958|AI414626|Adlican2|CMF608	immunoglobulin superfamily, member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67115765-4	chr10	67115660	67115860	+	974.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11498.0	NM_207221	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-21104583-4	chr19	21104478	21104678	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_126458)	promoter-TSS (NR_126458)	-132.0	NR_126458	75354.0	Mm.243873	NR_126458		4930554I06Rik	-	RIKEN cDNA 4930554I06 gene	ncRNA	3.55066218290429	3.81499527137371	3.91104222968784	3.73637165643401	4.03603712685015	4.13601124395369	4.38882191814964	3.60601090190905	0.444779588773102	0.334588559400504	0.83524594092861
Merged-chr11-94548465-4	chr11	94548367	94548567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013381, intron 2 of 8)	intron (NM_001013381, intron 2 of 8)	740.0	NM_001013381	237926.0	Mm.342275	NM_001013381	ENSMUSG00000039096	Rsad1	B430319G23|BC056485	radical S-adenosyl methionine domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115688200-2	chr11	115688100	115688300	+	743.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001313936, intron 2 of 5)	ORR1A4|LTR|ERVL-MaLR	11334.0	NM_001313937	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-163589424-1	chr2	163589324	163589524	+	608.0	f0_balb.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	-12890.0	NM_181734	76080.0	Mm.89828	NM_029512	ENSMUSG00000017679	Ttpal	3110080A02Rik|5830472M02Rik	tocopherol (alpha) transfer protein-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-27259333-2	chr3	27259233	27259433	+	634.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MuRRS-int|LTR|ERV1	-57744.0	NM_009425	22035.0	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-22856647-3	chr5	22856549	22856749	+	873.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359998, intron 1 of 3)	intron (NM_001359998, intron 1 of 3)	-109765.0	NR_027362	330052.0	Mm.459265	NR_027362	ENSMUSG00000105076	A930003O13Rik	-	RIKEN cDNA A930003O13 gene	ncRNA	5.31419533507065	5.68464839219591	4.502131400994	5.71392704879664	2.19967853404787	2.78876757342287	1.6882430297108	2.87955297257962	-4.03712056333535	2.32978925404204e-13	9.11504721847709e-11
Merged-chr5-122647639-3	chr5	122647501	122647701	+	909.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038845, intron 1 of 12)	intron (NM_001038845, intron 1 of 12)	-2823.0	NM_001284402	18439.0	Mm.42026	NM_011027	ENSMUSG00000029468	P2rx7	AI467586|P2X(7)|P2X7R	purinergic receptor P2X, ligand-gated ion channel, 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-104039086-3	chr14	104038957	104039157	+	938.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11915.0	NR_045953	73877.0	Mm.399172	NR_045953	ENSMUSG00000115727	4930432J09Rik	-	RIKEN cDNA 4930432J09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-56353417-4	chr13	56353312	56353512	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9488.0	NR_046061	100038494.0	Mm.370447	NR_046061	ENSMUSG00000074885	Gm10782	-	predicted gene 10782	ncRNA	6.94682763740739	6.5092176343605	6.57413559869364	6.96906256967123	7.46409705648305	7.19891549011575	7.22861080533089	7.07180500799164	0.504604687432476	0.00528977788808139	0.0696416478798836
Merged-chr13-115101890-4	chr13	115101734	115101934	+	978.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001033228, exon 1 of 29)	5' UTR (NM_001033228, exon 1 of 29)	130.0	NM_001033228	109700.0	Mm.317280	NM_001033228	ENSMUSG00000042284	Itga1	CD49A|E130012M19Rik|Vla1	integrin alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71488637-4	chr8	71488536	71488736	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_032544, exon 1 of 9)	5' UTR (NM_032544, exon 1 of 9)	533.0	NM_032544	70359.0	Mm.142112	NM_032544	ENSMUSG00000007610	Gtpbp3	2410009F13Rik|AI607903	GTP binding protein 3	protein-coding	3.27704131191025	3.06000649005038	3.38056323439748	3.28584892853309	3.44644776461289	3.32174616736182	4.0842683455157	3.86274424260515	0.712200637332338	0.184119101639576	0.659683749195192
Merged-chr12-85589465-7	chr12	85589373	85589573	+	894.64624	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9632.0	NM_001205052	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-33429537-4	chr12	33429429	33429629	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172253)	promoter-TSS (NM_172253)	-95.0	NM_172253	28071.0	Mm.196472	NM_172253	ENSMUSG00000020561	Twistnb	2410173G11|2810024J17Rik|D16Wsu83e	twist basic helix-loop-helix transcription factor 1 neighbor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-3534944-2	chr8	3534844	3535044	+	797.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_152827, intron 20 of 31)	intron (NR_152827, intron 20 of 31)	18081.0	NR_152827	50767.0	Mm.23085	NM_015801	ENSMUSG00000004565	Pnpla6	AI661849|MSws|Nte	patatin-like phospholipase domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-87910834-4	chr10	87910726	87910926	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111274, intron 2 of 4)	intron (NM_001111274, intron 2 of 4)	49715.0	NM_001111276	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-12275386-4	chr4	12275245	12275445	+	855.275024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-103330.0	NM_026558	68099.0	Mm.25340	NM_026558	ENSMUSG00000028218	Fam92a	6720467C03Rik|Fam92a1	family with sequence similarity 92, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-52363477-2	chr11	52363377	52363577	+	614.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011694, intron 1 of 8)	intron (NM_011694, intron 1 of 8)	2615.0	NM_011694	22333.0	Mm.3555	NM_011694	ENSMUSG00000020402	Vdac1	AL033343|Vdac5|mVDAC1|mVDAC5	voltage-dependent anion channel 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111426687-3	chr12	111426588	111426788	+	868.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289487, intron 9 of 13)	MIR|SINE|MIR	9243.0	NM_001289488	74190.0	Mm.248640	NM_028807	ENSMUSG00000021280	Exoc3l4	1200009I06Rik|1600013K19Rik	exocyst complex component 3-like 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-22743037-1	chr2	22742937	22743137	+	774.0	f0_balb.idr	Intergenic	A-rich|Low_complexity|Low_complexity	-31290.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-63164975-3	chr14	63164834	63165034	+	824.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360211, intron 1 of 7)	intron (NM_001360211, intron 1 of 7)	12953.0	NM_001360211	14137.0	Mm.474432	NM_010191	ENSMUSG00000021273	Fdft1	SQS|SS	farnesyl diphosphate farnesyl transferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-63047704-2	chr11	63047604	63047804	+	986.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13955.0	NM_027660	71062.0	Mm.23534	NM_027660	ENSMUSG00000042189	Tekt3	4933407G07Rik	tektin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-100125964-2	chr12	100125864	100126064	+	622.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290303, intron 13 of 13)	intron (NM_001290303, intron 13 of 13)	13633.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-119742266-4	chr2	119742160	119742360	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146125)	promoter-TSS (NM_146125)	-77.0	NM_146125	228550.0	Mm.65337	NM_146125	ENSMUSG00000027296	Itpka	-	inositol 1,4,5-trisphosphate 3-kinase A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-62765904-4	chr5	62765795	62765995	+	964.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_178407, exon 1 of 33)	5' UTR (NM_178407, exon 1 of 33)	282.0	NM_178407	212285.0	Mm.244403	NM_178407	ENSMUSG00000037999	Arap2	Centd1|Gm148|mKIAA0580	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26509215-2	chr17	26509115	26509315	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013642)	promoter-TSS (NM_013642)	-743.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-22121372-4	chr16	22121294	22121494	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183029, intron 2 of 15)	L1MA5|LINE|L1	41905.0	NM_183029	319765.0	Mm.489442	NM_183029	ENSMUSG00000033581	Igf2bp2	C330012H03Rik|IMP-2|Imp2|Neilsen	insulin-like growth factor 2 mRNA binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-149031393-4	chr5	149031290	149031490	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	20226.0	NM_001313894	15289.0	Mm.207047	NM_010439	ENSMUSG00000066551	Hmgb1	HMG-1|Hmg1|SBP-1|p30	high mobility group box 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30419659-4	chr7	30419557	30419757	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011827, intron 1 of 3)	intron (NM_011827, intron 1 of 3)	197.0	NM_011827	23900.0	Mm.379050	NM_011827	ENSMUSG00000064109	Hcst	DAP10|KAP10	hematopoietic cell signal transducer	protein-coding	3.93340953379777	3.06222764617374	2.95727359288782	3.48887295577416	2.26560534704012	2.71306338296014	2.29928566031935	2.38894145155835	-1.82084675699275	0.00718149306681613	0.0861378473976655
Merged-chr15-25365613-4	chr15	25365499	25365699	+	876.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027395, intron 1 of 1)	intron (NM_027395, intron 1 of 1)	48165.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-37604162-3	chr19	37604061	37604261	+	912.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175353, intron 17 of 21)	intron (NM_175353, intron 17 of 21)	53743.0	NM_175353	107371.0	Mm.24865	NM_175353	ENSMUSG00000053799	Exoc6	4833405E05Rik|AW413330|C430002C19|Sec15|Sec15l1|hbd|msec15	exocyst complex component 6	protein-coding	1.95507534558556	1.20734144478992	1.99683241558593	1.14758383791554	2.52299112420573	1.92311318046727	2.01370882469784	3.13768193916618	2.0850115783637	0.0416950064242048	0.292503799799122
Merged-chr6-6577803-4	chr6	6577711	6577911	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009169, intron 1 of 2)	MIRb|SINE|MIR	847.0	NM_009169	20422.0	Mm.2469	NM_009169	ENSMUSG00000042541	Sem1	DSS1|Shfdg1|Shfg|Shfm1	SEM1, 26S proteasome complex subunit	protein-coding	3.80099428122077	3.98506439838518	2.88587869895988	3.26804041151389	3.98323051144451	4.26219063761471	3.95195226669785	3.62903618649963	0.602379061457762	0.236423644869459	0.7331006782763
Merged-chr3-87999927-2	chr3	87999827	88000027	+	658.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007529, intron 1 of 13)	CpG	429.0	NM_007529	12032.0	Mm.4598	NM_007529	ENSMUSG00000004892	Bcan	Cspg7	brevican	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-86580591-5	chr11	86580550	86580750	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3508.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127292209-4	chr10	127292097	127292297	+	884.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290183, intron 1 of 2)	intron (NM_001290183, intron 1 of 2)	1404.0	NM_001290183	13198.0	Mm.110220	NM_007837	ENSMUSG00000025408	Ddit3	CHOP-10|CHOP10|chop|gadd153	DNA-damage inducible transcript 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-46341871-3	chr17	46341778	46341978	+	846.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR12E|LTR|ERVK	-13855.0	NM_170680	224814.0	Mm.76543	NM_145140	ENSMUSG00000032842	Abcc10	Mrp7|mFLJ00002	ATP-binding cassette, sub-family C (CFTR/MRP), member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-34108471-3	chr2	34108356	34108556	+	774.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_130173)	promoter-TSS (NR_130173)	-721.0	NR_130173	329387.0	Mm.125817	NR_130173	ENSMUSG00000087461	C230014O12Rik	-	RIKEN cDNA C230014O12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-79362583-4	chr8	79362482	79362682	+	899.43335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008539, intron 2 of 6)	L2c|LINE|L2	36886.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-56459546-3	chr19	56459430	56459630	+	874.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-2107.0	NM_001164263	226245.0	Mm.156742	NM_172641	ENSMUSG00000035818	Plekhs1	9930023K05Rik	pleckstrin homology domain containing, family S member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-40525532-4	chr3	40525438	40525638	+	874.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-2626.0	NR_040445	100040882.0	Mm.272869	NR_040445	ENSMUSG00000037884	1700017G19Rik	-	RIKEN cDNA 1700017G19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-93816277-3	chr13	93816190	93816390	+	845.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009712, intron 4 of 7)	intron (NM_009712, intron 4 of 7)	25513.0	NR_049198	100885837.0		NR_049198	ENSMUSG00000093480	Mir5624	Gm25075|mir-5624|mmu-mir-5624	microRNA 5624	ncRNA	-1.05433787351555	-1.03521066959286	-1.04642845936568	-0.7533208799879	-1.05386630084284	-1.03277972775296	-1.04388899764806	-0.628846266594589	0.543540423446939	0.86770660567911	1
Merged-chr10-128492163-2	chr10	128492063	128492263	+	985.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001317217, intron 4 of 6)	intron (NM_001317217, intron 4 of 6)	846.0	NM_001317220	17904.0	Mm.337074	NM_010860	ENSMUSG00000090841	Myl6	ESMLC|LC17|LC17-GI|MLC-3|MLC1SM|Myln	myosin, light polypeptide 6, alkali, smooth muscle and non-muscle	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67579995-4	chr10	67579854	67580054	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7995.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72884934-4	chr6	72884850	72885050	+	909.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019715, intron 1 of 6)	MIRc|SINE|MIR	14342.0	NM_001347231	74287.0	Mm.29194	NM_019715	ENSMUSG00000055239	Kcmf1	1700094M07Rik|Debt91|Pmcf	potassium channel modulatory factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-35840434-2	chr11	35840334	35840534	+	638.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_170779, intron 21 of 22)	intron (NM_170779, intron 21 of 22)	-5906.0	NM_025936	104458.0	Mm.284906	NM_025936	ENSMUSG00000018848	Rars	2610011N19Rik|2610037E21Rik|AL033339|AW985894	arginyl-tRNA synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-35750407-2	chr5	35750307	35750507	+	565.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7473.0	NM_001177697	231148.0	Mm.254446	NM_177678	ENSMUSG00000029095	Ablim2	AI606905|C230091L11	actin-binding LIM protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-82475947-4	chr18	82475845	82476045	+	932.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025245, intron 1 of 3)	intron (NM_001025245, intron 1 of 3)	822.0	NM_010777	17196.0	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-61498400-4	chr14	61498310	61498510	+	954.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045714, intron 2 of 2)	intron (NR_045714, intron 2 of 2)	5722.0	NR_045714	75349.0	Mm.233613	NR_045714	ENSMUSG00000115656	4930556J02Rik	-	RIKEN cDNA 4930556J02 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27358659-1	chr2	27358559	27358759	+	586.0	f0_balb.idr	intron (NR_133905, intron 1 of 29)	intron (NR_133905, intron 1 of 29)	68949.0	NR_133905	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97026230-4	chr11	97026117	97026317	+	971.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_133649, exon 1 of 2)	non-coding (NR_133649, exon 1 of 2)	201.0	NR_133649	100127433.0	Mm.156282	NR_133649	ENSMUSG00000087067	Gm11532	Sp6os	predicted gene 11532	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-88223020-2	chr1	88222920	88223120	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-4000.0	NM_001281466	100040766.0	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	Heatr7b1	maestro heat-like repeat family member 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-82165502-3	chr15	82165398	82165598	+	742.93335	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033218, intron 1 of 18)	B3|SINE|B2	18229.0	NM_033218	20788.0	Mm.38016	NM_033218	ENSMUSG00000022463	Srebf2	AI608257|SREBP-2|SREBP2|SREBP2gc|bHLHd2|lop13|nuc	sterol regulatory element binding factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-57690364-4	chr10	57690259	57690459	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039050, intron 2 of 4)	intron (NM_001039050, intron 2 of 4)	39378.0	NM_001190402	18768.0	Mm.262135	NM_008863	ENSMUSG00000019876	Pkib	Pkibeta|Prkacn2	protein kinase inhibitor beta, cAMP dependent, testis specific	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31429955-2	chr14	31429855	31430055	+	884.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011894, intron 2 of 8)	intron (NM_011894, intron 2 of 8)	6145.0	NM_011894	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35209944-2	chr17	35209848	35210048	+	1000.0	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-4597.0	NM_010735	16992.0	Mm.87787	NM_010735	ENSMUSG00000024402	Lta	LT|LT-[a]|LT-alpha|LT[a]|LTalpha|Ltx|TNF-beta|TNFSF1|Tnfb|Tnfsf1b|Tnlg1e|hlb382	lymphotoxin A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3951622-4	chr19	3951547	3951747	+	904.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7161.0	NM_028545	73458.0	Mm.482922	NM_028545	ENSMUSG00000037263	Aldh3b3	1700055N04Rik	aldehyde dehydrogenase 3 family, member B3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-12856118-1	chr10	12856018	12856218	+	1000.0	f0_balb.idr	intron (NM_011682, intron 1 of 73)	MLTR11A|LTR|ERVK	5617.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	0.776887567821532	0.848341335901183	0.825911209657739	0.807986276016186	1.88938364077892	2.16727595366786	1.62666414570043	2.24515062584897	5.4304931807005	0.000121435360337215	0.00355940094460725
Merged-chr4-147908507-2	chr4	147908407	147908607	+	952.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-3598.0	NM_001285921	170731.0	Mm.154312	NM_133201	ENSMUSG00000029020	Mfn2	D630023P19Rik|Fzo	mitofusin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3843629-4	chr12	3843516	3843716	+	993.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007872, intron 2 of 22)	intron (NM_007872, intron 2 of 22)	18628.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88622372-2	chr3	88622272	88622472	+	828.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001198913, intron 1 of 21)	intron (NM_001198913, intron 1 of 21)	978.0	NM_001198912	16800.0	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-177703610-4	chr1	177703516	177703716	+	905.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26198.0	NM_027077	69428.0	Mm.84467	NM_027077	ENSMUSG00000015962	1700016C15Rik	-	RIKEN cDNA 1700016C15 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-6475228-7	chr11	6475225	6475425	+	989.464294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011221, exon 1 of 1)	exon (NM_011221, exon 1 of 1)	751.0	NM_011221	19291.0	Mm.296150	NM_011221	ENSMUSG00000094483	Purb	2310015K15Rik|AA114818|Cager-2|D11Bwg0414e	purine rich element binding protein B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-40205522-3	chr12	40205424	40205624	+	570.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013562, intron 9 of 11)	intron (NM_013562, intron 9 of 11)	-6209.0	NM_001033437	380755.0	Mm.390463	NM_001033437	ENSMUSG00000071342	Lsmem1	Gm889	leucine-rich single-pass membrane protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-91302331-4	chr5	91302209	91302409	+	986.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-19233.0	NR_040428	100503265.0	Mm.125059	NR_040428	ENSMUSG00000107198	Gm19619	-	predicted gene, 19619	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4731613-2	chr16	4731513	4731713	+	640.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001136066, intron 1 of 5)	ORR1A3|LTR|ERVL-MaLR	5252.0	NM_001136066	15369.0	Mm.272866	NM_010443	ENSMUSG00000004070	Hmox2	HO-2|HO2	heme oxygenase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-79541812-3	chr14	79541719	79541919	+	783.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007920, intron 2 of 8)	ORR1C1|LTR|ERVL-MaLR	26145.0	NM_001286411	13709.0	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6494773-2	chr19	6494673	6494873	+	671.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205234, intron 17 of 22)	intron (NM_001205234, intron 17 of 22)	48297.0	NM_009203	20521.0	Mm.391146	NM_009203	ENSMUSG00000061742	Slc22a12	AI987855|OAT4L|Rst|Slc22al2|URAT1	solute carrier family 22 (organic anion/cation transporter), member 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-74924099-3	chr15	74923990	74924190	+	960.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30961.0	NM_001164039	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	3.03277008515411	2.82989142412287	2.72890850631891	2.64669523279309	3.71047897218454	3.89339529357136	4.09817221854177	2.91428917906138	1.4607774664092	0.0144626634802992	0.141382158965207
Merged-chr13-37541858-4	chr13	37541771	37541971	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	196526.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	4.67436874118145	4.16258186957659	2.93763954827724	5.01066411660594	4.50843969996465	3.96909483429909	2.62253941079971	4.67437101619847	-0.322290652517936	0.570373515181561	0.962718661854691
Merged-chr14-8171429-2	chr14	8171329	8171529	+	662.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_024221, exon 3 of 10)	exon (NM_024221, exon 3 of 10)	1563.0	NM_024221	68263.0	Mm.301527	NM_024221	ENSMUSG00000021748	Pdhb	2610103L06Rik|AL024199|C81408	pyruvate dehydrogenase (lipoamide) beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191097264-4	chr1	191097155	191097355	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1159.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-111544956-3	chr10	111544804	111545004	+	745.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	38618.0	NM_009344	21664.0	Mm.3117	NM_009344	ENSMUSG00000020205	Phlda1	DT1P1B11|TDAG51|Tdag	pleckstrin homology like domain, family A, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-21318449-4	chr16	21318331	21318531	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14925.0	NR_131983	76222.0	Mm.86031	NR_131983		Magef1	6430590I03Rik	melanoma antigen family F, 1	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-103543555-4	chr14	103543452	103543652	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022886, intron 7 of 30)	intron (NM_022886, intron 7 of 30)	30211.0	NM_022886	64929.0	Mm.244003	NM_022886	ENSMUSG00000022123	Scel	9230114I02Rik	sciellin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-11588157-4	chr2	11588026	11588226	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152824, intron 8 of 11)	MTE2a|LTR|ERVL-MaLR	15073.0	NM_152824	76938.0	Mm.182769	NM_152824	ENSMUSG00000037197	Rbm17	2700027J02Rik	RNA binding motif protein 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-58123080-1	chr14	58122980	58123180	+	603.0	f0_balb.idr	Intergenic	L1M4|LINE|L1	50394.0	NM_013518	14180.0	Mm.8846	NM_013518	ENSMUSG00000021974	Fgf9	Eks	fibroblast growth factor 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-31628410-2	chr15	31628310	31628510	+	726.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME1|LINE|L1	26294.0	NM_001356313	68073.0	Mm.119185	NM_026546	ENSMUSG00000039065	Fam173b	A930016P21Rik|AA987072	family with sequence similarity 173, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129513605-4	chr4	129513509	129513709	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010807)	promoter-TSS (NM_010807)	28.0	NM_010807	17357.0	Mm.424974	NM_010807	ENSMUSG00000047945	Marcksl1	AL022768|AW215397|AW536807|D4Bc1|F52|MacMARCKS|Macs2|Macs3|Mlp|Mrp	MARCKS-like 1	protein-coding	5.45511108500291	5.05257717086197	5.82621079361463	5.60466851084407	5.25828894338846	5.17071490457335	5.27354915077732	5.19626268719398	-0.333469601142068	0.24394829825722	0.741611068198512
Merged-chr7-122101881-4	chr7	122101769	122101969	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028177)	promoter-TSS (NM_028177)	-21.0	NM_028177	70316.0	Mm.3014	NM_028177	ENSMUSG00000030869	Ndufab1	2210401F17Rik|2310039H15Rik|2610003B19Rik|8kDa|9130423F15Rik|ACP|CI-SDAP|SDAP	NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-111808403-8	chr13	111808230	111808430	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011945, intron 1 of 19)	CpG	663.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-110269908-4	chr5	110269831	110270031	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163538)	promoter-TSS (NM_001163538)	-32.0	NM_001163538	72542.0	Mm.61682	NM_028273	ENSMUSG00000029500	Pgam5	2610528A17Rik	phosphoglycerate mutase family member 5	protein-coding	5.80788634728028	5.06463818115636	6.55208848433022	6.23888177873882	5.73592224888355	5.22998896468831	6.26625561380873	6.51859974607121	0.00385110021784916	0.990610973255776	0.998431161219273
Merged-chr1-176824662-4	chr1	176824568	176824768	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357390, intron 1 of 18)	intron (NM_001357390, intron 1 of 18)	10008.0	NM_029756	76816.0	Mm.171399	NM_029756	ENSMUSG00000026504	Sdccag8	2700048G21Rik|5730470G24Rik|Cccap	serologically defined colon cancer antigen 8	protein-coding	1.75475147658935	1.66590679463731	1.6053447272018	0.921716734613507	1.59064182457296	1.8024655293743	1.15497375281573	0.923952054036725	-0.374346181846425	0.77026967769186	0.998431161219273
Merged-chr16-55789659-4	chr16	55789527	55789727	+	893.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32511.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-165624792-4	chr1	165624701	165624901	+	844.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083897, intron 1 of 5)	B3|SINE|B2	9740.0	NM_001001880	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-122440750-4	chr2	122440660	122440860	+	841.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172980)	promoter-TSS (NM_172980)	-60.0	NM_172980	269346.0	Mm.29510	NM_172980	ENSMUSG00000027219	Slc28a2	2010208B10Rik|B430217P18|BB152493|Cnt2|SPNT	solute carrier family 28 (sodium-coupled nucleoside transporter), member 2	protein-coding	-0.0944268732222402	-0.0839523839197666	0.189934776573125	0.0475760808461891	0.312603933285369	-0.0831627411949096	0.196350799821588	0.0500394910029019	1.09465011616298	0.602632594335096	1
Merged-chr9-108483035-2	chr9	108482935	108483135	+	664.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_008483, exon 11 of 33)	exon (NM_008483, exon 11 of 33)	3173.0	NM_008483	16779.0	Mm.27560	NM_008483	ENSMUSG00000052911	Lamb2	AW211941|Lamb-2|Lams|npht	laminin, beta 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-122205633-2	chr7	122205533	122205733	+	896.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	-13863.0	NM_027363	70261.0	Mm.96997	NM_027363	ENSMUSG00000030865	Chp2	2010110P09Rik|Cbhp2	calcineurin-like EF hand protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-31932278-2	chr16	31932178	31932378	+	779.299988	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER54A|LTR|ERVL	-1573.0	NM_172822	239827.0	Mm.440388	NM_172822	ENSMUSG00000045625	Pigz	F630022B06Rik	phosphatidylinositol glycan anchor biosynthesis, class Z	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-15012690-2	chr9	15012590	15012790	+	584.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019482, intron 2 of 4)	intron (NM_019482, intron 2 of 4)	32788.0	NM_019482	55991.0	Mm.142253	NM_019482	ENSMUSG00000031934	Panx1	AI847747	pannexin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-135725638-3	chr2	135725533	135725733	+	857.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355156, intron 1 of 37)	intron (NM_001355156, intron 1 of 37)	-39205.0	NM_001355154	18798.0	Mm.38009	NM_013829	ENSMUSG00000039943	Plcb4	A930039J07Rik|AI854601|C230058B11Rik	phospholipase C, beta 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-86599518-3	chr11	86599410	86599610	+	792.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356531, intron 10 of 11)	(A)n|Simple_repeat|Simple_repeat	-15352.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-131834203-2	chr4	131834103	131834303	+	715.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083119, intron 1 of 30)	intron (NM_001083119, intron 1 of 30)	4075.0	NM_011214	19273.0	Mm.4860	NM_011214	ENSMUSG00000028909	Ptpru	Ftp-1|PCP-2|PTP|PTP-lambda|PTPlambda|Pcp2|Ptpf|Ptprl|R-PTP-U|R-PTP-psi|RPTPlambda	protein tyrosine phosphatase, receptor type, U	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-12966938-2	chr7	12966838	12967038	+	558.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001362140, intron 1 of 2)	intron (NM_001362140, intron 1 of 2)	1100.0	NM_001362139	243834.0	Mm.133086	NM_178732	ENSMUSG00000004500	Zfp324	A930002M05|D430030K24Rik|ZF5128	zinc finger protein 324	protein-coding	0.632666039878112	1.47753564382256	0.850582723996631	1.06877159245316	0.777118611258024	0.503887978577333	0.693589527342717	0.485933608113122	-2.39009749577073	0.136471315775064	1
Merged-chr9-5310665-2	chr9	5310565	5310765	+	584.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_007609, intron 1 of 8)	Lx5c|LINE|L1	1816.0	NM_007609	12363.0	Mm.1569	NM_007609	ENSMUSG00000033538	Casp4	CASP-11|CASP-4|Casp11|Caspl|ich-3	caspase 4, apoptosis-related cysteine peptidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-96910941-2	chr5	96910841	96911041	+	850.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10331.0	NR_131152	666266.0	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-76699846-3	chr11	76699757	76699957	+	855.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19984.0	NM_177709	237858.0	Mm.127006	NM_177709	ENSMUSG00000046275	Tusc5	C130069F04Rik|DSPB1|Lost1	tumor suppressor candidate 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-79953059-2	chr8	79952959	79953159	+	565.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	104949.0	NM_020259	15245.0	Mm.254493	NM_020259	ENSMUSG00000064325	Hhip	Hhip1	Hedgehog-interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100730304-2	chr11	100730204	100730404	+	805.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001305003, intron 1 of 5)	intron (NM_001305003, intron 1 of 5)	7911.0	NM_024456	19345.0	Mm.29829	NM_024456	ENSMUSG00000019173	Rab5c	AI326010|Rabl	RAB5C, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-94625111-3	chr16	94624998	94625198	+	654.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113389, intron 2 of 11)	MLT1G1|LTR|ERVL-MaLR	13679.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-43607140-4	chr7	43607051	43607251	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028913)	promoter-TSS (NM_028913)	-18.0	NM_001355131	74400.0	Mm.159188	NM_028913	ENSMUSG00000055102	Zfp819	4930427I11Rik|4933405K07Rik	zinc finger protein 819	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-53436653-1	chr3	53436553	53436753	+	742.599976	f0_balb.idr	Intergenic	MTC|LTR|ERVL-MaLR	26605.0	NM_172501	212114.0	Mm.85744	NM_172501	ENSMUSG00000042997	Nhlrc3	4833441N19|8030451K01Rik|mKIAA4083	NHL repeat containing 3	protein-coding	0.647394822640413	0.670919264503651	0.663164809272519	1.07431761262188	1.12266085366407	1.02432644640222	1.48474404994412	1.08051211293876	2.48096823564766	0.118965439393573	0.541133408551742
Merged-chr7-129333824-2	chr7	129333724	129333924	+	668.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080963, intron 5 of 6)	C-rich|Low_complexity|Low_complexity	76730.0	NM_001080963	381925.0	Mm.39184	NM_001080963	ENSMUSG00000070366	Plpp4	C030048B12Rik|Gm1090|Ppapdc1a	phospholipid phosphatase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-69299438-2	chr12	69299334	69299534	+	897.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_027117, intron 1 of 12)	intron (NM_027117, intron 1 of 12)	2753.0	NM_027117	69554.0	Mm.234368	NM_027117	ENSMUSG00000020978	Klhdc2	2310022K15Rik|D12Ertd522e|HCLP-1|LCP	kelch domain containing 2	protein-coding	1.36683025288324	1.27582556304189	1.4324692483822	0.561151849291641	0.548378547770473	0.583991188790631	1.10298971672369	0.56271537277051	-2.38963283314743	0.157340997000054	0.614055724561402
Merged-chr9-105484513-4	chr9	105484427	105484627	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253831, intron 1 of 26)	L1MB7|LINE|L1	10606.0	NM_175025	235574.0	Mm.326247	NM_175025	ENSMUSG00000032570	Atp2c1	1700121J11Rik|ATP2C1A|AW061228|BCPM|D930003G21Rik|HHD|SPCA|pmr1	ATPase, Ca++-sequestering	protein-coding	2.38310931183957	2.02362578941772	2.93068719291071	2.08130123825813	2.95945766026619	2.0397989022059	4.05662298188601	2.40673512152953	1.28290718173858	0.111955944996079	0.523751271664787
Merged-chr4-141664187-4	chr4	141664086	141664286	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033150)	promoter-TSS (NM_001033150)	-71.0	NM_001033150	69582.0	Mm.33220	NM_001033150	ENSMUSG00000028917	Plekhm2	2310034J19Rik|AI854247|mKIAA0842	pleckstrin homology domain containing, family M (with RUN domain) member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-130225257-2	chr5	130225157	130225357	+	743.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027854, intron 1 of 6)	B2_Mm1t|SINE|B2	2922.0	NM_027854	71667.0	Mm.258508	NM_027854	ENSMUSG00000053094	Tmem248	0610007L01Rik|A930023A16Rik|AW557951|G430067H08Rik	transmembrane protein 248	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-53443105-3	chr10	53443021	53443221	+	709.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33239.0	NR_152767	102640074.0	Mm.412957	NR_152767		Gm36229	-	predicted gene, 36229	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-161864013-2	chr1	161863969	161864169	+	620.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_151684, intron 1 of 24)	intron (NR_151684, intron 1 of 24)	12613.0	NM_172645	226551.0	Mm.170002	NM_172645	ENSMUSG00000040297	Suco	4732491B11|AI848100|AU016931|Opt	SUN domain containing ossification factor	protein-coding	-1.32440223303897	-1.29339468673833	-0.717877708899544	-1.31276353204239	-1.32392690786997	-1.29109028300231	-1.30162128075409	-1.31119997543009	-2.49510383040271	0.470258445164311	1
Merged-chr5-113815955-3	chr5	113815843	113816043	+	858.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14558.0	NM_009151	20345.0	Mm.332590	NM_009151	ENSMUSG00000048163	Selplg	CD162|Psgl-1|Psgl1|Selp1|Selpl	selectin, platelet (p-selectin) ligand	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-71098135-3	chr1	71098026	71098226	+	821.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007525, intron 1 of 10)	MTD|LTR|ERVL-MaLR	4846.0	NM_007525	12021.0	Mm.10764	NM_007525	ENSMUSG00000026196	Bard1	-	BRCA1 associated RING domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-114681914-2	chr5	114681814	114682014	+	671.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019821, intron 1 of 4)	intron (NM_019821, intron 1 of 4)	9021.0	NM_019821	56356.0	Mm.275766	NM_019821	ENSMUSG00000011884	Gltp	1110001F24Rik|C76925|C77564	glycolipid transfer protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70355890-3	chr8	70355753	70355953	+	870.214294	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2574.0	NM_001122829	19704.0	Mm.258280	NM_030680	ENSMUSG00000058301	Upf1	B430202H16Rik|NORF1|PNORF-1|Rent1|Upflp	UPF1 regulator of nonsense transcripts homolog (yeast)	protein-coding	-1.53362919331644	-1.50201671710775	-1.51157659084044	-1.08120497225282	-1.53141005593807	-1.49994505258991	-1.50941244497383	-1.51802371459528	-1.94474658522739	0.577200604274218	1
Merged-chr7-44904812-2	chr7	44904712	44904912	+	595.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077264, intron 11 of 22)	intron (NM_001077264, intron 11 of 22)	8733.0	NM_027376	70300.0	Mm.276298	NM_027376	ENSMUSG00000011658	Fuz	2600013E07Rik|b2b1273Clo	fuzzy planar cell polarity protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-50592679-4	chr10	50592595	50592795	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198007)	promoter-TSS (NM_198007)	26.0	NM_198007	77987.0	Mm.222497	NM_198007	ENSMUSG00000038774	Ascc3	ASC1p200|B630009I04Rik|BC023451|D430001L07Rik|D630041L21|Helic1|RNAH	activating signal cointegrator 1 complex subunit 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167800237-4	chr2	167800143	167800343	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J1|LTR|ERVL-MaLR	109066.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167353608-2	chr2	167353508	167353708	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4430.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-20898850-1	chr13	20898750	20898950	+	618.5	f0_balb.idr	intron (NM_012054, intron 4 of 20)	intron (NM_012054, intron 4 of 20)	104737.0	NM_012054	27052.0	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-124349896-4	chr8	124349749	124349949	+	817.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	84087.0	NM_171824	209966.0	Mm.234233	NM_171824	ENSMUSG00000050751	Pgbd5	2900019M05Rik|AI854313	piggyBac transposable element derived 5	protein-coding	3.3536037305026	3.67675154326897	2.94594820093942	3.70492514280047	3.10057320598509	3.18585657792239	3.07920728431671	1.90256300336925	-0.907439512814774	0.159871945334514	0.61955542639648
Merged-chr2-167314860-3	chr2	167314785	167314985	+	827.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019835, intron 1 of 8)	B4|SINE|B4	34293.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-57264156-4	chr14	57264050	57264250	+	970.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-130539.0	NM_001010937	14623.0	Mm.25652	NM_008128	ENSMUSG00000040055	Gjb6	AA958971|Cx30|D14Bwg0506e	gap junction protein, beta 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-28032068-5	chr3	28031833	28032033	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008875, intron 6 of 25)	intron (NM_008875, intron 6 of 25)	47762.0	NM_008875	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28687905-2	chr17	28687805	28688005	+	647.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290320, intron 1 of 19)	RSINE1|SINE|B4	2082.0	NM_001290320	224661.0		NM_146076	ENSMUSG00000036196	Slc26a8	-	solute carrier family 26, member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-91111336-3	chr6	91111244	91111444	+	747.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018815, intron 1 of 39)	intron (NM_018815, intron 1 of 39)	5482.0	NM_018815	54563.0	Mm.28162	NM_018815	ENSMUSG00000030091	Nup210	9830001L10|AI836801|Pom210|gp190|gp210	nucleoporin 210	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59106099-1	chr15	59105999	59106199	+	814.5	f0_balb.idr	Intergenic	Intergenic	-24073.0	NM_144800	211401.0	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	-1.8418762459921	-1.8125357239735	-1.82140854000656	-1.82869693527674	-1.56059678980999	-1.8106129477253	-1.81939992894326	-1.82739231600805	1.3620893379502	0.699511506488145	1
Merged-chr10-127288846-4	chr10	127288759	127288959	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_033072, exon 1 of 13)	5' UTR (NM_033072, exon 1 of 13)	159.0	NM_001347171	110962.0	Mm.372826	NM_033072	ENSMUSG00000025409	Mbd6	D10Wsu93e	methyl-CpG binding domain protein 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-41468469-4	chr13	41468387	41468587	+	985.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111324, intron 1 of 7)	intron (NM_001111324, intron 1 of 7)	18873.0	NM_001111324	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21244776-2	chr9	21244676	21244876	+	656.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_053190, exon 3 of 3)	exon (NM_053190, exon 3 of 3)	3667.0	NM_053190	94226.0	Mm.190619	NM_053190	ENSMUSG00000045087	S1pr5	Edg8|S1P5|lpB4	sphingosine-1-phosphate receptor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-153921838-4	chr1	153921742	153921942	+	848.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	21913.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115657540-2	chr11	115657422	115657622	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001313936, intron 2 of 5)	intron (NM_001313936, intron 2 of 5)	-29227.0	NM_001252395	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-18237188-6	chr14	18237032	18237232	+	815.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011584, intron 1 of 7)	intron (NM_011584, intron 1 of 7)	1974.0	NM_011584	353187.0	Mm.26587	NM_011584	ENSMUSG00000021775	Nr1d2	RVR|Rev-erb	nuclear receptor subfamily 1, group D, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-157565127-2	chr3	157565027	157565227	+	730.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3B|LINE|L1	-1692.0	NM_001359745	19218.0	Mm.30424	NM_011196	ENSMUSG00000040016	Ptger3	EP3|Pgerep3|Ptgerep3	prostaglandin E receptor 3 (subtype EP3)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-56266247-2	chr9	56266147	56266347	+	682.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172924, intron 3 of 6)	intron (NM_172924, intron 3 of 6)	-105177.0	NM_019793	56434.0	Mm.28484	NM_019793	ENSMUSG00000032324	Tspan3	1700055K04Rik|TM4-A|Tm4sf8	tetraspanin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-35539202-3	chr12	35539083	35539283	+	813.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4194.0	NM_001314027	11622.0	Mm.341377	NM_013464	ENSMUSG00000019256	Ahr	Ah|Ahh|Ahre|In|bHLHe76	aryl-hydrocarbon receptor	protein-coding	1.58270352695305	1.68078101739442	1.466841303402	1.56025744078519	0.803289235712074	2.48681573802646	0.850383202325768	0.831465244647143	-0.132483863130847	0.921768726089724	0.998431161219273
Merged-chr4-46916997-3	chr4	46916897	46917097	+	649.694458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081141, intron 1 of 18)	intron (NM_001081141, intron 1 of 18)	74717.0	NM_001081141	242425.0	Mm.101909	NM_001081141	ENSMUSG00000039809	Gabbr2	GABABR2|Gb2|Gm425|Gpr51	gamma-aminobutyric acid (GABA) B receptor, 2	protein-coding	0.0432687616530789	-0.194542385914715	-0.0318748596049478	0.0846707234132734	-0.206374768453818	-0.193604187514802	-0.197779506880136	0.402461873522766	0.0887381879305685	0.968710396889301	1
Merged-chr2-30827682-5	chr2	30827587	30827787	+	859.7333369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133346, intron 1 of 5)	intron (NM_133346, intron 1 of 5)	613.0	NM_133346	72323.0	Mm.27656	NM_133346	ENSMUSG00000039483	Asb6	2510004M11Rik|AA409356	ankyrin repeat and SOCS box-containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-115368528-3	chr2	115368413	115368613	+	894.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24233.0	NR_040516	78193.0	Mm.189508	NR_040516	ENSMUSG00000087309	4930528P14Rik	-	RIKEN cDNA 4930528P14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-117976777-4	chr5	117976692	117976892	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145564)	promoter-TSS (NM_145564)	22.0	NM_001346588	231670.0	Mm.21912	NM_145564	ENSMUSG00000032898	Fbxo21	2810425J22Rik|AU016673	F-box protein 21	protein-coding	2.00596505370945	3.03075449284374	3.20248952393562	2.11955547487602	2.15354544973051	2.67611260867431	2.03990253152927	1.32095156307479	-1.1861358145754	0.186633195795726	0.663801902121675
Merged-chr10-77624246-2	chr10	77624146	77624346	+	745.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019803, intron 1 of 5)	B4A|SINE|B4	1925.0	NM_019803	22213.0	Mm.458125	NM_019803	ENSMUSG00000009293	Ube2g2	1110003O05Rik|D10Xrf369|UBC7|Ubc7p	ubiquitin-conjugating enzyme E2G 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-23844764-4	chr18	23844658	23844858	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162941, intron 3 of 7)	intron (NM_001162941, intron 3 of 7)	40788.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-31563793-3	chr5	31563694	31563894	+	861.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7603.0	NR_102275	100740.0	Mm.23370	NR_102275		AI839979	-	expressed sequence AI839979	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-72474604-2	chr8	72474479	72474679	+	948.0	f0_balb.idr|f0_c57.idr	intron (NM_001359024, intron 2 of 17)	intron (NM_001359024, intron 2 of 17)	654.0	NM_001359024	27967.0	Mm.30136	NM_138585	ENSMUSG00000052488	Cherp	5730408I11Rik|D8Wsu96e|DAN16|Scaf6	calcium homeostasis endoplasmic reticulum protein	protein-coding	1.27051311431619	1.08805449489072	2.00022588282546	1.03093044510167	1.76367017643274	0.859425499419933	1.39712750183253	1.03537154993021	-0.345032345587988	0.789034259301297	0.998431161219273
Merged-chr6-129476912-4	chr6	129476811	129477011	+	857.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4132.0	NR_132130	56644.0	Mm.239516	NM_020008	ENSMUSG00000079293	Clec7a	BGR|Clecsf12|beta-GR	C-type lectin domain family 7, member a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-24081997-1	chr5	24081897	24082097	+	612.0	f0_balb.idr	Intergenic	Intergenic	-18593.0	NM_026448	52323.0	Mm.273768	NM_026448	ENSMUSG00000028986	Klhl7	2700038B03Rik|D5Ertd363e|SBBI26	kelch-like 7	protein-coding	1.58748674709183	2.3204568650742	2.70703154132625	2.42903039765943	2.60369829556179	1.98865466309818	2.72807621466118	2.96527569574618	0.642433470867669	0.440039210034313	0.90933352428379
Merged-chr3-10306997-4	chr3	10306890	10307090	+	918.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5807.0	NM_029310	75497.0	Mm.47052	NM_029310	ENSMUSG00000027530	Fabp12	1700008G05Rik	fatty acid binding protein 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-88115705-3	chr4	88115640	88115840	+	792.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081184, intron 1 of 43)	Tigger7|DNA|TcMar-Tigger	-6300.0	NR_030478	735282.0		NR_030478	ENSMUSG00000070077	Mir491	Mirn491|mir-491|mmu-mir-491	microRNA 491	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30496036-4	chr2	30495907	30496107	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21808.0	NM_030244	72500.0	Mm.295464	NM_030244	ENSMUSG00000089762	Ier5l	2610524G09Rik	immediate early response 5-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-55641180-4	chr16	55641063	55641263	+	608.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB2|LINE|L1	146432.0	NR_039578	100628589.0		NR_039578	ENSMUSG00000093292	Mir5118	mmu-mir-5118|mu-mir-5118	microRNA 5118	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-114883603-4	chr6	114883498	114883698	+	982.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356371, intron 3 of 5)	intron (NM_001356371, intron 3 of 5)	38223.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-24553616-4	chr1	24553518	24553718	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007733, intron 4 of 50)	intron (NM_007733, intron 4 of 50)	33819.0	NM_007733	12823.0	Mm.329196	NM_007733	ENSMUSG00000026141	Col19a1	-	collagen, type XIX, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-53464843-4	chr19	53464749	53464949	+	993.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028427)	promoter-TSS (NR_028427)	-53.0	NR_028427	381232.0	Mm.248624	NR_028427	ENSMUSG00000097636	Mirt1	4833407H14Rik|5430437C04Rik|5830416P10Rik|Gm10758	myocardial infarction associated transcript 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-48974910-2	chr13	48974810	48975010	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6798.0	NR_015601	68128.0	Mm.426304	NR_015601		Fam120aos	C030044B11Rik	family with sequence similarity 120A, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-24422265-4	chr8	24422140	24422340	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16706.0	NM_026931	69068.0	Mm.25775	NM_026931	ENSMUSG00000056313	Tcim	1110065B09Rik|1810011O10Rik|AW121743|AW321058	transcriptional and immune response regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-90115265-2	chr3	90115165	90115365	+	683.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029937, intron 3 of 39)	intron (NM_029937, intron 3 of 39)	11133.0	NM_029937	77595.0	Mm.159949	NM_029937	ENSMUSG00000027939	Nup210l	4930548O11Rik|R26-EGFP|Tg(Gt(ROSA)26Sor-EGFP)130910Eps	nucleoporin 210-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-23488905-4	chr13	23488816	23489016	+	926.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175938)	promoter-TSS (NM_175938)	-59.0	NM_001289614	238555.0	Mm.129668	NM_175938	ENSMUSG00000053216	Btn2a2	Btn2|D030063K05	butyrophilin, subfamily 2, member A2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-66284617-2	chr15	66284521	66284721	+	971.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_152923, intron 1 of 14)	intron (NM_152923, intron 1 of 14)	1603.0	NM_152923	110862.0	Mm.255585	NM_152923	ENSMUSG00000056258	Kcnq3	-	potassium voltage-gated channel, subfamily Q, member 3	protein-coding	1.26745413211312	1.45241196376872	1.78911482103378	0.72558376117027	0.887476468288759	0.981553930523843	0.738974571810548	1.35573415135566	-1.45011816143324	0.303665351946679	0.805462835517226
Merged-chr5-140350135-4	chr5	140350018	140350218	+	931.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172277, intron 7 of 10)	intron (NM_172277, intron 7 of 10)	18162.0	NM_001356584	17766.0	Mm.118846	NM_008637	ENSMUSG00000036639	Nudt1	Mth1	nudix (nucleoside diphosphate linked moiety X)-type motif 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-98804655-2	chr13	98804555	98804755	+	651.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172591, intron 2 of 25)	L2|LINE|L2	10794.0	NM_172591	218503.0	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153275156-4	chr2	153275048	153275248	+	994.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-16268.0	NM_008444	16569.0	Mm.315560	NM_008444	ENSMUSG00000027475	Kif3b	AI854312|AW549267|mKIAA0359	kinesin family member 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-117843234-2	chr2	117843134	117843334	+	737.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_040631, intron 2 of 5)	intron (NR_040631, intron 2 of 5)	21306.0	NR_040631	73938.0	Mm.399107	NR_040631	ENSMUSG00000086221	4930412B13Rik	-	RIKEN cDNA 4930412B13 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-67614599-1	chr17	67614499	67614699	+	553.0	f0_balb.idr	intron (NR_155516, intron 2 of 2)	intron (NR_155516, intron 2 of 2)	14733.0	NR_155516	102640031.0	Mm.421441	NR_155516		Gm36201	-	predicted gene, 36201	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27008495-4	chr17	27008408	27008608	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER20A|LTR|ERVK	-9527.0	NM_001251881	70772.0	Mm.440437	NM_027544	ENSMUSG00000048731	Ggnbp1	0610031G08Rik|mdf	gametogenetin binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5491459-4	chr19	5491364	5491564	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007687, intron 1 of 3)	intron (NM_007687, intron 1 of 3)	1009.0	NM_007687	12631.0	Mm.329655	NM_007687	ENSMUSG00000056201	Cfl1	AA959946|Cof	cofilin 1, non-muscle	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-29516894-2	chr6	29516794	29516994	+	754.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8942.0	NM_001029985	333088.0	Mm.332961	NM_001029985	ENSMUSG00000059022	Kcp	AW060220|CRIM-2|Crim2|Gm793|KCP-1	kielin/chordin-like protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-58568177-2	chr15	58568077	58568277	+	616.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	152709.0	NM_145959	210998.0	Mm.3224	NM_145959	ENSMUSG00000037119	Fam91a1	AV220772|BC033609|D15Ertd621e|SKIN|mKIAA0493	family with sequence similarity 91, member A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-76407067-3	chr16	76406965	76407165	+	927.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33238.0	NM_001358238	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-88234210-4	chr11	88234113	88234313	+	795.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29825.0	NM_001291271	64656.0	Mm.168680	NM_024174	ENSMUSG00000023723	Mrps23	D11Bwg1153e|MRP-S23|Rpms23|S23mt	mitochondrial ribosomal protein S23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67187327-4	chr10	67187225	67187425	+	923.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001242396, intron 1 of 24)	intron (NM_001242396, intron 1 of 24)	1575.0	NM_001242396	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-76225342-4	chr16	76225244	76225444	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	102731.0	NR_040575	78215.0	Mm.243885	NR_040575		4930578N18Rik	-	RIKEN cDNA 4930578N18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-30393166-1	chr16	30393066	30393266	+	657.0	f1_c57bl6.idr	Intergenic	RLTR25B|LTR|ERVK	-4636.0	NM_001128096	224088.0	Mm.8924	NM_001128094	ENSMUSG00000022533	Atp13a3	AU022875|Gm1745|Gm541|Gm542	ATPase type 13A3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-16472469-2	chr5	16472369	16472569	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-81026.0	NM_001289460	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-33966525-2	chr1	33966425	33966625	+	628.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001276764, intron 2 of 102)	intron (NM_001276764, intron 2 of 102)	-45300.0	NM_133833	13518.0	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-125560733-4	chr7	125560659	125560859	+	789.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001008700, intron 1 of 10)	PB1D9|SINE|Alu	8477.0	NM_001008700	16190.0	Mm.233802	NM_010557	ENSMUSG00000030748	Il4ra	CD124|Il4r	interleukin 4 receptor, alpha	protein-coding	-1.84303373260285	-1.81303463126392	-1.82210660711932	-1.82955859819738	-1.84092785115721	-1.81106869625141	-1.8200529106377	-1.54273750312762	1.50114612804783	0.670102668014672	1
Merged-chr11-4189307-4	chr11	4189200	4189400	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134023, intron 1 of 8)	intron (NM_134023, intron 1 of 8)	2467.0	NM_134023	103724.0	Mm.28140	NM_134023	ENSMUSG00000034412	Tbc1d10a	AI447804|EPI64|Tbc1d10|mFLJ00288	TBC1 domain family, member 10a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-44314583-4	chr19	44314489	44314689	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11418.0	NR_039574	100628619.0		NR_039574	ENSMUSG00000093315	Mir5114	mmu-mir-5114|mu-mir-5114	microRNA 5114	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-35155618-2	chr4	35155518	35155718	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178061, intron 1 of 3)	intron (NM_178061, intron 1 of 3)	1866.0	NM_178061	214944.0	Mm.32968	NM_178061	ENSMUSG00000073910	Mob3b	8430436F23Rik|A430018A01Rik|Mobkl2b	MOB kinase activator 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-92676889-2	chr1	92676789	92676989	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28048.0	NM_153114	260301.0	Mm.219545	NM_153114	ENSMUSG00000044055	Otos	OTOSP	otospiralin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-22755646-2	chr2	22755546	22755746	+	689.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	-18681.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80689802-2	chr10	80689702	80689902	+	903.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_172457, intron 3 of 3)	intron (NM_172457, intron 3 of 3)	12018.0	NM_172457	208228.0	Mm.49309	NM_172457	ENSMUSG00000003348	Mob3a	5330417K06Rik|A630029F06|AV218468|Mobkl2a	MOB kinase activator 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-105841259-4	chr10	105841147	105841347	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025602)	promoter-TSS (NM_025602)	133.0	NM_001359642	216292.0	Mm.250875	NM_207522	ENSMUSG00000036009	Mettl25	-	methyltransferase like 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27278748-2	chr2	27278648	27278848	+	847.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_133905, intron 19 of 29)	intron (NR_133905, intron 19 of 29)	-31445.0	NM_138665	192166.0	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-160792945-4	chr1	160792860	160793060	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013862)	promoter-TSS (NM_013862)	-22.0	NM_013862	29809.0	Mm.25833	NM_013862	ENSMUSG00000026721	Rabgap1l	5830411O09Rik|8430421H08Rik|9630005B12Rik|AW049894|HHL|Hh1|mKIAA0471	RAB GTPase activating protein 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-170136577-4	chr1	170136487	170136687	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38377.0	NM_133806	107652.0	Mm.27969	NM_133806	ENSMUSG00000026670	Uap1	AA420407|AA437972|AGX-1|AGX-2|AGX1|AgX|ESTM38|SPAG2	UDP-N-acetylglucosamine pyrophosphorylase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-41831089-2	chr10	41830989	41831189	+	896.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162908, intron 1 of 9)	intron (NM_001162908, intron 1 of 9)	20515.0	NM_001162908	140742.0	Mm.139418	NM_001013370	ENSMUSG00000038332	Sesn1	1110002G11Rik|AU044290|Pa26|Sest1	sestrin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-71864717-4	chr12	71864614	71864814	+	861.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026102, intron 1 of 25)	intron (NM_026102, intron 1 of 25)	-24829.0	NM_001286452	208846.0	Mm.87417	NM_026102	ENSMUSG00000034574	Daam1	-	dishevelled associated activator of morphogenesis 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-61564824-3	chr11	61564734	61564934	+	969.7333369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252189, intron 1 of 8)	intron (NM_001252189, intron 1 of 8)	14853.0	NM_010148	13855.0	Mm.139695	NM_010148	ENSMUSG00000001036	Epn2	9530051D10Rik|AA536924|Ibp2	epsin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-22437701-4	chr11	22437592	22437792	+	971.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74591.0	NM_153596	103765.0	Mm.221274	NM_153596	ENSMUSG00000049904	Tmem17	AI503894|AW049890	transmembrane protein 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-85183874-4	chr10	85183778	85183978	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007771, intron 1 of 12)	intron (NM_007771, intron 1 of 12)	1176.0	NM_007771	12952.0	Mm.26237	NM_007771	ENSMUSG00000020038	Cry1	AU020726|AU021000|Phll1	cryptochrome 1 (photolyase-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43042062-2	chr4	43041962	43042162	+	921.666626	f1_balb.idr|f1_c57bl6.idr	intron (NR_045567, intron 1 of 7)	PB1D10|SINE|Alu	-1761.0	NM_001253354	230088.0	Mm.260162	NM_172691	ENSMUSG00000036002	Fam214b	B230312A22Rik	family with sequence similarity 214, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-111929336-3	chr13	111929153	111929353	+	866.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61317.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-62244870-3	chr1	62244780	62244980	+	782.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081050, intron 15 of 22)	intron (NM_001081050, intron 15 of 22)	-108771.0	NR_151537	105243940.0		NR_151537		Pard3bos2	Gm12747	par-3 family cell polarity regulator beta, opposite strand 2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-75387612-2	chr18	75387512	75387712	+	868.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001042660, intron 3 of 3)	intron (NM_001042660, intron 3 of 3)	20247.0	NM_001042660	17131.0	Mm.34407	NM_008543	ENSMUSG00000025880	Smad7	Madh7	SMAD family member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-125113485-6	chr8	125113382	125113582	+	863.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_174854, intron 3 of 12)	intron (NM_174854, intron 3 of 12)	59287.0	NM_174854	244667.0	Mm.233504	NM_170596	ENSMUSG00000043051	Disc1	-	disrupted in schizophrenia 1	protein-coding	0.78942205442763	1.17346641813251	0.524757228737412	0.517917343523784	1.11012199674371	1.18527062810978	0.526707157787358	0.843766167554582	0.810126893608581	0.619958740960737	1
Merged-chr2-72851032-2	chr2	72850932	72851132	+	913.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37315.0	NR_102349	76218.0	Mm.75260	NR_102348	ENSMUSG00000085427	6430710C18Rik	5033406J01Rik	RIKEN cDNA 6430710C18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91138210-2	chr2	91138110	91138310	+	673.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001177720, exon 35 of 35)	3' UTR (NM_001177720, exon 35 of 35)	20066.0	NM_008653	17868.0	Mm.10728	NM_008653	ENSMUSG00000002100	Mybpc3	-	myosin binding protein C, cardiac	protein-coding	-0.794197098132548	-0.785494246621067	-0.788358814803606	-0.790560087978616	-0.653870454880918	-0.784045333883926	-0.341637130452159	-0.494572721826991	3.0507428295858	0.2674368154056	1
Merged-chr12-29698217-4	chr12	29698119	29698319	+	849.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361657, intron 3 of 24)	intron (NM_001361657, intron 3 of 24)	-11774.0	NR_046080	328075.0	Mm.447832	NR_046080	ENSMUSG00000112663	C630031E19Rik	C630031E19	RIKEN cDNA C630031E19 gene	ncRNA	2.71243922714031	2.94602239021881	3.11198466774724	3.41514897720174	2.32201182403666	1.5765356303111	2.64922500740007	2.56649766136827	-1.41294519133781	0.0600986671668438	0.36309990136288
Merged-chr11-51819533-2	chr11	51819433	51819633	+	754.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357588, intron 11 of 12)	intron (NM_001357588, intron 11 of 12)	37948.0	NM_199299	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-24476673-2	chr19	24476573	24476773	+	846.833374	f1_balb.idr|f1_c57bl6.idr	exon (NM_026520, exon 1 of 1)	exon (NM_026520, exon 1 of 1)	801.0	NM_026520	68034.0	Mm.440181	NM_026520	ENSMUSG00000074922	Fam122a	2410124L17Rik|2900009I07Rik|Gm9849	family with sequence similarity 122, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-13869-1	chr4	13769	13969	+	1000.0	f1_c57bl6.idr	Intergenic	Intergenic	-3158214.0	NM_001167534	100312470.0	Mm.480297	NM_001167534	ENSMUSG00000115072	Vmn1r2	Gm11776	vomeronasal 1 receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-52457889-2	chr18	52457778	52457978	+	627.0	f0_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7815.0	NM_026040	67222.0	Mm.100617	NM_026040	ENSMUSG00000024528	Srfbp1	2810036K01Rik|p49/STRAP	serum response factor binding protein 1	protein-coding	1.13721603489552	0.719349876148398	1.60238835497414	1.87089247548756	1.14804873437102	0.722457899063456	1.10827715000863	0.696351584786811	-1.94583675067343	0.184341883638998	0.659825155101641
Merged-chr3-41522958-4	chr3	41522847	41523047	+	860.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_130791, exon 2 of 6)	non-coding (NR_130791, exon 2 of 6)	5527.0	NR_130791	78648.0	Mm.366093	NR_130791		2400006E01Rik	Gm43733|lncRNA-JADE	RIKEN cDNA 2400006E01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-135907714-4	chr6	135907600	135907800	+	923.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008171, intron 5 of 14)	intron (NM_008171, intron 5 of 14)	248787.0	NR_126088	75024.0	Mm.399147	NR_126088	ENSMUSG00000107396	4930425L21Rik	4930473P14Rik	RIKEN cDNA 4930425L21 gene	ncRNA	3.31595990773777	2.28723520417668	4.68844197082493	4.43579080463589	2.36895082446785	3.16263621954242	4.09111126875724	2.67406239708766	-1.06025755186571	0.124839270911652	0.553113157211875
Merged-chr17-47543383-2	chr17	47543283	47543483	+	661.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081635, intron 1 of 6)	intron (NM_001081635, intron 1 of 6)	38332.0	NM_001081635	12445.0	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	1.56287648756186	1.24503528362273	3.14586272510072	1.43825882940574	1.89900846037354	1.78246978589314	3.11190771337255	2.57960424995689	0.669332774893236	0.515085445265882	0.947270872516868
Merged-chr9-32716278-3	chr9	32716169	32716369	+	959.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038642, intron 1 of 6)	intron (NM_001038642, intron 1 of 6)	20227.0	NM_001038642	23871.0	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	1.55379895610317	2.07997926934807	1.28924643679332	1.93388750813275	1.03721457328236	0.899586610651923	0.881970665175656	1.41023932645886	-2.57750492493662	0.0475912424779827	0.316372639286098
Merged-chr14-73445275-1	chr14	73445175	73445375	+	948.3333130000001	f0_balb.idr	Intergenic	Intergenic	-59986.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-107832312-2	chr13	107832212	107832412	+	738.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 2 of 14)	intron (NM_145456, intron 2 of 14)	57752.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-103717138-2	chr14	103717038	103717238	+	646.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-17706.0	NR_045148	70898.0	Mm.27548	NR_045148	ENSMUSG00000089707	Slain1os	4921525B02Rik	SLAIN motif family, member 1, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-45687355-4	chr14	45687251	45687451	+	790.700012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29208.0	NM_001042719	114874.0	Mm.121918	NM_176845	ENSMUSG00000037697	Ddhd1	Mir5131|PA-PLA1	DDHD domain containing 1	protein-coding	-0.417994955982857	-0.406084105585217	-0.236144233064791	-0.413006863286615	-0.2740326995145	-0.211453847402515	0.259702472788271	-0.412481113800264	2.63348722713389	0.267832366110817	1
Merged-chr8-25995594-2	chr8	25995494	25995694	+	661.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-1473.0	NM_029037	74653.0	Mm.17631	NM_029037	ENSMUSG00000037251	Pomk	4930444A02Rik|Sgk196	protein-O-mannose kinase	protein-coding	1.40577694380504	1.45790058617961	0.869950604096416	1.48782829635113	1.17201997606234	1.46953382069065	1.95096291735977	0.860181451384307	0.387012031506579	0.767078187434426	0.998431161219273
Merged-chr8-120366266-2	chr8	120366166	120366366	+	555.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-122600.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-104523214-2	chr14	104523114	104523314	+	610.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026047)	promoter-TSS (NM_026047)	-548.0	NM_026047	72486.0	Mm.291811	NM_026047	ENSMUSG00000022120	Rnf219	2610206B13Rik|2810449K13Rik|AI451544	ring finger protein 219	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-95488891-4	chr8	95488804	95489004	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009974)	promoter-TSS (NM_009974)	-84.0	NM_009974	13000.0	Mm.51136	NM_009974	ENSMUSG00000046707	Csnk2a2	1110035J23Rik|C77789|CK2	casein kinase 2, alpha prime polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70525271-4	chr11	70525176	70525376	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008946)	promoter-TSS (NM_008946)	-81.0	NM_008946	19175.0	Mm.98	NM_008946	ENSMUSG00000018286	Psmb6	Lmp19|Mpnd	proteasome (prosome, macropain) subunit, beta type 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-27948876-2	chr6	27948776	27948976	+	852.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361125, intron 3 of 10)	intron (NM_001361125, intron 3 of 10)	-12126.0	NR_030420	735266.0		NR_030420	ENSMUSG00000076067	Mir592	Mirn592|mir-592|mmu-mir-592	microRNA 592	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-18935679-4	chr8	18935589	18935789	+	866.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176951, intron 6 of 6)	intron (NM_176951, intron 6 of 6)	15182.0	NM_001286469	319581.0	Mm.111354	NM_176951	ENSMUSG00000039814	Xkr5	5430438H03Rik|XRG5	X-linked Kx blood group related 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-79775309-2	chr15	79775239	79775439	+	555.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017470)	promoter-TSS (NM_017470)	-872.0	NM_017470	54152.0	Mm.288159	NM_017470	ENSMUSG00000022420	Dnal4	D15Ertd424e|Dnalc4	dynein, axonemal, light chain 4	protein-coding	-0.741137318105767	-0.731204107404499	-0.734464235909355	-0.736975701129993	-0.358213607516477	-0.730468476873686	-0.154708788891539	-0.736537198856671	3.22733664683838	0.264464732018009	1
Merged-chr16-23423532-2	chr16	23423432	23423632	+	821.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	7SK|RNA|RNA	-5601.0	NM_001004151	239766.0	Mm.208751	NM_001004151	ENSMUSG00000033383	Rtp1	Gm1766|Gm604	receptor transporter protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-23286263-2	chr16	23286163	23286363	+	780.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252505, intron 2 of 7)	intron (NM_001252505, intron 2 of 7)	-4207.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-51100141-3	chr13	51100037	51100237	+	861.2333369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001283030)	promoter-TSS (NM_001283030)	590.0	NR_029463	77428.0	Mm.405630	NR_029463		9430083A17Rik	-	RIKEN cDNA 9430083A17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-11664107-4	chr2	11663998	11664198	+	925.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008367, intron 1 of 7)	intron (NM_008367, intron 1 of 7)	21306.0	NM_008367	16184.0	Mm.915	NM_008367	ENSMUSG00000026770	Il2ra	CD25|Il2r|Ly-43	interleukin 2 receptor, alpha chain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43967768-2	chr4	43967668	43967868	+	723.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027450, intron 1 of 4)	intron (NM_027450, intron 1 of 4)	10066.0	NM_027450	384009.0	Mm.22213	NM_027450	ENSMUSG00000028480	Glipr2	5730414A08Rik|C77180|GAPR-1	GLI pathogenesis-related 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131260539-2	chr1	131260439	131260639	+	996.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_019777, intron 16 of 21)	intron (NM_019777, intron 16 of 21)	-15361.0	NM_018750	54354.0	Mm.248291	NM_018750	ENSMUSG00000026430	Rassf5	1300019G20Rik|Maxp1|Nore1|Nore1A|Nore1B|Rapl	Ras association (RalGDS/AF-6) domain family member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-25869902-1	chr14	25869802	25870002	+	544.0	f1_c57bl6.idr	intron (NM_013469, intron 2 of 14)	intron (NM_013469, intron 2 of 14)	27747.0	NM_013469	11744.0	Mm.294083	NM_013469	ENSMUSG00000021866	Anxa11	A830099O17Rik|Anx11	annexin A11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-54045744-4	chr5	54045654	54045854	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081103, intron 1 of 11)	intron (NM_001081103, intron 1 of 11)	47231.0	NM_001081103	116873.0	Mm.265985	NM_054083	ENSMUSG00000039156	Stim2	-	stromal interaction molecule 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-35270494-2	chr16	35270394	35270594	+	709.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001012765, intron 5 of 20)	intron (NM_001012765, intron 5 of 20)	93424.0	NM_133704	317717.0	Mm.259164	NM_133704	ENSMUSG00000034473	Sec22a	1810005C06Rik|Sec22l2	SEC22 homolog A, vesicle trafficking protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-56495990-2	chr3	56495890	56496090	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-312289.0	NM_030595	26422.0	Mm.384353	NM_030595	ENSMUSG00000027799	Nbea	Lyst2|mKIAA1544	neurobeachin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-17899389-2	chr17	17899293	17899493	+	832.450012	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11569.0	NM_008039	14289.0	Mm.378918	NM_008039	ENSMUSG00000052270	Fpr2	E330010I07Rik|Fpr-rs2	formyl peptide receptor 2	protein-coding	0.0699505785334288	0.169531099422292	-0.177629778930703	-0.181045811467507	-0.185861246624315	0.431446684289153	-0.176651943583824	-0.0198234038538441	0.54485206591351	0.807853834341081	1
Merged-chr8-11472319-2	chr8	11472219	11472419	+	917.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011227, intron 1 of 1)	MT2C_Mm|LTR|ERVL	-5610.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-55910460-2	chr16	55910360	55910560	+	866.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028815, intron 10 of 10)	RMER1A|Other|Other	-15181.0	NM_001134457	385658.0	Mm.310635	NM_001134457	ENSMUSG00000075033	Nxpe3	Fam55c|Gm1752|Gm611	neurexophilin and PC-esterase domain family, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-79892904-4	chr10	79892821	79893021	+	891.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001329541)	TTS (NM_001329541)	2068.0	NM_001291915	11537.0	Mm.4407	NM_013459	ENSMUSG00000061780	Cfd	Adn|DF	complement factor D (adipsin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-31093496-4	chr5	31093413	31093613	+	835.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011773)	promoter-TSS (NM_011773)	14.0	NM_011773	22784.0	Mm.1396	NM_011773	ENSMUSG00000029151	Slc30a3	Znt3	solute carrier family 30 (zinc transporter), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-21676807-4	chr2	21676700	21676900	+	937.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004761, intron 5 of 10)	intron (NM_001004761, intron 5 of 10)	309233.0	NM_001004761	241263.0	Mm.166647	NM_175706	ENSMUSG00000045967	Gpr158	5330427M13Rik|mKIAA1136	G protein-coupled receptor 158	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-27863526-4	chr3	27863400	27863600	+	990.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32868.0	NM_001164437	208613.0	Mm.59189	NM_001164437	ENSMUSG00000043164	Tmem212	E030011K20Rik|Gm564	transmembrane protein 212	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120234791-2	chr11	120234691	120234891	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198423, intron 1 of 27)	CpG	1844.0	NM_198423	268515.0	Mm.309498	NM_198423	ENSMUSG00000039741	Bahcc1	B930044J06|BC060615	BAH domain and coiled-coil containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180228598-2	chr1	180228498	180228698	+	674.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001128605, intron 10 of 10)	intron (NM_001128605, intron 10 of 10)	17352.0	NM_011183	19165.0	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41446300-2	chr19	41446200	41446400	+	595.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-61230.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-69272001-1	chr8	69271901	69272101	+	608.5	f1_balb.idr	intron (NM_172491, intron 1 of 5)	intron (NM_172491, intron 1 of 5)	921.0	NM_172491	211135.0	Mm.294970	NM_172491	ENSMUSG00000079038	D130040H23Rik	-	RIKEN cDNA D130040H23 gene	protein-coding	0.655676373374237	0.399319134722557	0.391373021517592	0.829951160375176	0.376457614779391	0.606431712290762	0.875681757842313	1.22432742068447	1.30525882555435	0.451056173042683	1
Merged-chr15-80254407-4	chr15	80254324	80254524	+	799.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001287180)	promoter-TSS (NM_001287180)	-760.0	NM_001287180	11911.0	Mm.641	NM_009716	ENSMUSG00000042406	Atf4	Atf-4|C/ATF|CREB2|TAXREB67	activating transcription factor 4	protein-coding	2.63827851472927	1.45444139896018	2.47508015296698	2.28753675074418	3.09616780993934	2.15006975338837	2.07983918391963	2.79404068898644	0.674061879345998	0.438348989698494	0.908698311577985
Merged-chr13-14630230-4	chr13	14630140	14630340	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001104646)	promoter-TSS (NM_001104646)	-5.0	NM_001104646	105351.0	Mm.41450	NM_134067	ENSMUSG00000039182	AW209491	-	expressed sequence AW209491	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-10565476-2	chr17	10565376	10565576	+	880.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027032, intron 4 of 4)	MTE2b|LTR|ERVL-MaLR	109260.0	NR_077238	319750.0	Mm.383485	NR_077237	ENSMUSG00000089633	A230009B12Rik	-	RIKEN cDNA A230009B12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-119970814-3	chr2	119970742	119970942	+	875.7333369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1857.0	NM_001355293	26390.0	Mm.330501	NM_011941	ENSMUSG00000033902	Mapkbp1	2810483F24Rik|AW123212|JNKBP-1|Jnkbp1|mKIAA0596	mitogen-activated protein kinase binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-37912366-2	chr13	37912266	37912466	+	675.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039188, intron 6 of 9)	L3|LINE|CR1	23495.0	NM_001177869	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-127608249-2	chr3	127608149	127608349	+	634.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_197997, intron 19 of 25)	B2_Mm2|SINE|B2	-24887.0	NM_009718	11924.0	Mm.42017	NM_009718	ENSMUSG00000027967	Neurog2	Atoh4|Math4A|bHLHa8|ngn-2|ngn2	neurogenin 2	protein-coding	-2.05752322593321	-2.15521190974092	-2.16307242109104	-2.16952927915413	-2.17938029103484	-2.15350850414045	-2.16129297361887	-2.16837350464794	-0.683654500252594	0.846597994014493	1
Merged-chr11-103399280-2	chr11	103399180	103399380	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183034, intron 2 of 11)	B3|SINE|B2	13384.0	NM_183034	353047.0	Mm.18556	NM_183034	ENSMUSG00000034247	Plekhm1	AP162|B2|BC038943|D330036J23Rik	pleckstrin homology domain containing, family M (with RUN domain) member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-34270441-4	chr19	34270363	34270563	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15090.0	NM_007392	11475.0	Mm.213025	NM_007392	ENSMUSG00000035783	Acta2	0610041G09Rik|Actvs|SMAalpha|SMalphaA|a-SMA|alphaSMA	actin, alpha 2, smooth muscle, aorta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-90021626-4	chr9	90021520	90021720	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357743, intron 26 of 26)	intron (NM_001357743, intron 26 of 26)	-32647.0	NM_007801	13036.0	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-42961756-4	chr4	42961645	42961845	+	676.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-8201.0	NM_026088	67317.0	Mm.478018	NM_026088	ENSMUSG00000028451	1700022I11Rik	-	RIKEN cDNA 1700022I11 gene	protein-coding	2.93997989594627	2.87292651424967	3.09300500393926	3.4528849743869	2.8796155114986	2.24728429401444	3.01982575907197	3.33897476415062	-0.309702990043721	0.636521640124641	0.982417279970648
Merged-chr10-73386322-2	chr10	73386222	73386422	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4A|LINE|L1	-299617.0	NR_040646	327768.0	Mm.417745	NR_040646	ENSMUSG00000111994	A330049N07Rik	-	RIKEN cDNA A330049N07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-125789377-2	chr2	125789277	125789477	+	763.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-6507.0	NM_177608	70354.0	Mm.138091	NM_133725	ENSMUSG00000035093	Secisbp2l	3110001I20Rik|AI504340|C630011I23	SECIS binding protein 2-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-88207573-3	chr8	88207373	88207573	+	924.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164499, intron 2 of 11)	L1MD2|LINE|L1	8260.0	NM_001164498	214627.0	Mm.491211	NM_001164497	ENSMUSG00000036779	Papd5	5730445M16Rik|5830428A09	PAP associated domain containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-53818309-4	chr1	53818279	53818479	+	998.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001883, intron 28 of 28)	(GA)n|Simple_repeat|Simple_repeat	-31045.0	NR_106149	102465783.0		NR_106149	ENSMUSG00000098443	Mir7681	Gm27806|mmu-mir-7681	microRNA 7681	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-103393746-4	chr15	103393656	103393856	+	983.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26965.0	NM_001314041	16402.0	Mm.16234	NM_010577	ENSMUSG00000000555	Itga5	Cd49e|Fnra|VLA5	integrin alpha 5 (fibronectin receptor alpha)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-75734360-4	chr2	75734256	75734456	+	991.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29693.0	NM_010902	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	2.94335871447636	2.38549734330713	2.97158141289341	3.71438371733244	3.99709411660553	3.97745179694993	4.25742034498542	4.51481713975176	1.61539734780044	0.0024718006032316	0.039367252616247
Merged-chr8-126758872-2	chr8	126758772	126758972	+	625.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-90148.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10846261-4	chr19	10846113	10846313	+	832.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023044, intron 1 of 7)	intron (NM_023044, intron 1 of 7)	3669.0	NM_023044	65221.0	Mm.27387	NM_023044	ENSMUSG00000024737	Slc15a3	Ci1|cI-1	solute carrier family 15, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43561106-2	chr4	43561006	43561206	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011602, intron 1 of 56)	intron (NM_011602, intron 1 of 56)	1477.0	NM_011602	21894.0	Mm.208601	NM_011602	ENSMUSG00000028465	Tln1	Tln	talin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-160171285-4	chr2	160171163	160171363	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	154610.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-42596296-2	chr19	42596196	42596396	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164311, intron 14 of 14)	PB1D10|SINE|Alu	16510.0	NM_001164311	67573.0	Mm.178767	NM_053083	ENSMUSG00000025185	Loxl4	4833426I20Rik|Loxc	lysyl oxidase-like 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-119976107-2	chr4	119976007	119976207	+	662.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010657, intron 1 of 8)	intron (NM_010657, intron 1 of 8)	161429.0	NM_010657	16656.0	Mm.302758	NM_010657	ENSMUSG00000028634	Hivep3	2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3	human immunodeficiency virus type I enhancer binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44984480-2	chr7	44984380	44984580	+	680.333374	f1_balb.idr|f1_c57bl6.idr	intron (NR_045521, intron 1 of 11)	intron (NR_045521, intron 1 of 11)	1940.0	NM_001252476	15469.0	Mm.27545	NM_019830	ENSMUSG00000109324	Prmt1	6720434D09Rik|AW214366|Hrmt1l2|Mrmt1	protein arginine N-methyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-9504517-4	chr13	9504380	9504580	+	851.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081426, intron 2 of 36)	intron (NM_001081426, intron 2 of 36)	227955.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-35993196-3	chr1	35993123	35993323	+	825.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-75177.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-8682760-3	chr15	8682674	8682874	+	703.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_148938, intron 3 of 9)	intron (NM_148938, intron 3 of 9)	28033.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-38320788-4	chr6	38320675	38320875	+	889.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028864, intron 7 of 8)	RLTR45|LTR|ERVK	-21516.0	NM_172467	209032.0	Mm.101389	NM_172467	ENSMUSG00000047749	Zc3hav1l	B130055L09Rik|E430016P22Rik	zinc finger CCCH-type, antiviral 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-121846989-1	chr5	121846889	121847089	+	881.0	f1_c57bl6.idr	Intergenic	Intergenic	-2008.0	NM_175474	231717.0	Mm.12654	NM_175474	ENSMUSG00000044134	Fam109a	A230106M15Rik|AU017694|IPIP27A|Ses1	family with sequence similarity 109, member A	protein-coding	1.61562703660309	1.61061385960152	0.872414930243199	1.37504819046526	1.99969720492617	0.891473818646099	1.56346733212122	0.862338158569488	0.125634931088994	0.927540495809539	0.998431161219273
Merged-chr4-141016603-4	chr4	141016502	141016702	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008546)	TTS (NM_008546)	5965.0	NM_008546	17150.0	Mm.7386	NM_008546	ENSMUSG00000060572	Mfap2	AI893631|Magp|Magp1	microfibrillar-associated protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-61394980-4	chr18	61394896	61395096	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133249, intron 1 of 11)	intron (NM_133249, intron 1 of 11)	2904.0	NR_029879	723889.0		NR_029879	ENSMUSG00000105200	Mir378a	Mir378|Mirn378|mmu-mir-378|mmu-mir-378a	microRNA 378a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101383533-1	chr7	101383433	101383633	+	836.0	f0_balb.idr	intron (NM_001040112, intron 1 of 30)	intron (NM_001040112, intron 1 of 30)	-1993.0	NM_027180	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-58424929-2	chr1	58424827	58425027	+	782.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027853)	promoter-TSS (NR_027853)	-839.0	NM_001042634	12747.0	Mm.1761	NM_009905	ENSMUSG00000026034	Clk1	STY	CDC-like kinase 1	protein-coding	0.424391679564925	0.167007658997984	0.160389186741727	1.05274812397719	0.300748191299154	0.541107861891452	0.349412967732412	0.156161783690034	-1.12234273505663	0.550365666069353	1
Merged-chr2-167386091-2	chr2	167385991	167386191	+	571.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35619.0	NM_148929	77031.0	Mm.278924	NM_148929	ENSMUSG00000039463	Slc9a8	1200006P13Rik|6430709P13Rik|AI182282|NHE-8|NHE8	solute carrier family 9 (sodium/hydrogen exchanger), member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-125569573-1	chr8	125569473	125569673	+	1000.0	f1_c57bl6.idr	intron (NM_001357372, intron 1 of 21)	CpG	290.0	NM_001357372	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	4.91612699859345	3.70784905467654	4.11888322264473	4.28628718493524	4.75749264293034	3.63472530102447	4.14992523955607	3.89474697172707	-0.201273428987154	0.666708173090206	0.992515300319318
Merged-chr19-23145253-2	chr19	23145153	23145353	+	728.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010638, intron 1 of 1)	B1_Mur1|SINE|Alu	4027.0	NM_010638	16601.0	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|Gm9971	Kruppel-like factor 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-98708379-4	chr10	98708283	98708483	+	946.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-206259.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-76703640-4	chr14	76703591	76703791	+	972.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26123.0	NR_015485	73272.0	Mm.116804	NR_015485	ENSMUSG00000101009	1700108F19Rik	1700020I02Rik|BB065030	RIKEN cDNA 1700108F19 gene	ncRNA	3.38514323386087	2.80571768943706	3.34574066751004	2.37182905873715	2.51917201450953	2.18016960562953	2.95303767673238	3.12499765615766	-0.543544940204396	0.442446073898618	0.911647291190116
Merged-chr11-63060117-4	chr11	63060013	63060213	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1546.0	NM_027660	71062.0	Mm.23534	NM_027660	ENSMUSG00000042189	Tekt3	4933407G07Rik	tektin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-119457388-3	chr1	119457292	119457492	+	850.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35144.0	NM_008381	16324.0	Mm.3092	NM_008381	ENSMUSG00000037035	Inhbb	-	inhibin beta-B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16287236-3	chr7	16287157	16287357	+	861.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001136471)	promoter-TSS (NM_001136471)	-462.0	NM_001136471	243846.0	Mm.482401	NM_172297	ENSMUSG00000041375	Ccdc9	2600011L02Rik	coiled-coil domain containing 9	protein-coding	2.10885158374598	2.20689272184381	1.45515697882427	2.4857796883422	2.75018942267326	3.24600252493306	2.98185213744493	2.97001990193891	1.81486008406556	0.0208583305109899	0.184465540150509
Merged-chr14-46760464-4	chr14	46760363	46760563	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028222)	promoter-TSS (NM_028222)	-78.0	NM_001360041	72391.0	Mm.272394	NM_028222	ENSMUSG00000037628	Cdkn3	2410006H10Rik|KAP	cyclin-dependent kinase inhibitor 3	protein-coding	6.42090893124222	6.72551549348238	7.00748980244978	6.3543515190098	6.42449096761224	6.74806102821641	6.8681585982075	6.48131560289976	-0.00948020709331787	0.96404291748209	0.998431161219273
Merged-chr3-31100951-2	chr3	31100851	31101051	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039090, intron 2 of 6)	intron (NM_001039090, intron 2 of 6)	5893.0	NM_001271772	20482.0	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-7433299-2	chr17	7433199	7433399	+	889.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47994.0	NM_001142539	667055.0	Mm.327371	NM_001142539	ENSMUSG00000056133	Gm9992	-	predicted gene 9992	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-170582537-4	chr1	170582437	170582637	+	933.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109985, intron 1 of 9)	MTE2b|LTR|ERVL-MaLR	7312.0	NM_001109985	70729.0	Mm.409310	NM_027528	ENSMUSG00000038473	Nos1ap	6330408P19Rik|Capon	nitric oxide synthase 1 (neuronal) adaptor protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-103209951-1	chr11	103209851	103210051	+	547.0	f1_c57bl6.idr	intron (NM_177801, intron 2 of 4)	intron (NM_177801, intron 2 of 4)	-1403.0	NM_001254724	69441.0	Mm.380648	NM_027082	ENSMUSG00000020940	1700023F06Rik	-	RIKEN cDNA 1700023F06 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-72795243-2	chr5	72795143	72795343	+	599.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013689, intron 3 of 17)	intron (NM_013689, intron 3 of 17)	-42466.0	NM_001122754	22165.0	Mm.3264	NM_013698	ENSMUSG00000054892	Txk	A130089B16Rik|Btkl|PTK-RL-18|PTK4|Rlk	TXK tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-51180511-2	chr17	51180411	51180611	+	657.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1159.0	NM_001285991	72238.0	Mm.120650	NM_028162	ENSMUSG00000023923	Tbc1d5	1600014N05Rik	TBC1 domain family, member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-143852126-2	chr2	143852026	143852226	+	691.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291061, intron 2 of 7)	intron (NM_001291061, intron 2 of 7)	11047.0	NM_009751	12075.0	Mm.275937	NM_009751	ENSMUSG00000027420	Bfsp1	CP95	beaded filament structural protein 1, in lens-CP94	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-180116217-2	chr2	180116117	180116317	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3149.0	NM_144500	228983.0	Mm.253578	NM_144500	ENSMUSG00000039050	Osbpl2	C130070J12Rik|ORP-2|Orp2|mKIAA0772	oxysterol binding protein-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-178055952-2	chr2	178055852	178056052	+	844.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6BA|LTR|ERVK	22473.0	NM_001162922	353208.0	Mm.381194	NM_001162922	ENSMUSG00000078861	Zfp931	2810021G02Rik	zinc finger protein 931	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-117164763-3	chr5	117164702	117164902	+	792.033325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081308, intron 1 of 19)	intron (NM_001081308, intron 1 of 19)	31214.0	NM_183306	330177.0	Mm.24343	NM_183306	ENSMUSG00000061288	Taok3	2900006A08Rik|A130052D22|A430105I05Rik	TAO kinase 3	protein-coding	2.54731475457866	2.36851886667934	1.95050265899008	1.6915175155762	3.07018782603261	2.87895025967311	2.96342929617349	2.5993698678577	1.47352411460658	0.0588319663240411	0.358328349110683
Merged-chr15-36152128-3	chr15	36152037	36152237	+	732.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081253, exon 4 of 5)	exon (NM_001081253, exon 4 of 5)	-11737.0	NM_001195748	626596.0	Mm.321798	NM_001195748	ENSMUSG00000037627	Rgs22	-	regulator of G-protein signalling 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-102284829-4	chr11	102284710	102284910	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302506)	promoter-TSS (NM_001302506)	-10.0	NM_001302506	72053.0	Mm.101274	NM_028076	ENSMUSG00000034757	Tmub2	2010008E23Rik	transmembrane and ubiquitin-like domain containing 2	protein-coding	4.82918546198972	2.96680362945467	4.72088050490691	3.97487649327484	4.37678749436933	4.45127414616379	5.17754381467299	4.29393594987729	0.39205430256652	0.407790504274663	0.891845785649541
Merged-chr7-121983251-4	chr7	121983155	121983355	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-1562.0	NM_001033318	233824.0	Mm.442015	NM_001033318	ENSMUSG00000034951	Cog7	5630400E24Rik|Gm167	component of oligomeric golgi complex 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-28176971-4	chr4	28176871	28177071	+	778.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	SYNREP_MM|Satellite|Satellite	-636160.0	NM_001290434	13841.0	Mm.257266	NM_010141	ENSMUSG00000028289	Epha7	Cek11|Ebk|Ehk3|Hek11|Mdk1	Eph receptor A7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84842740-2	chr8	84842640	84842840	+	682.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_007591, exon 9 of 9)	exon (NM_007591, exon 9 of 9)	-2075.0	NM_009010	19358.0	Mm.255539	NM_009010	ENSMUSG00000003813	Rad23a	2310040P19Rik|AL024030|HR23A|mHR23A	RAD23 homolog A, nucleotide excision repair protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-56465496-4	chr9	56465386	56465586	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025812, intron 1 of 9)	intron (NM_025812, intron 1 of 9)	46867.0	NM_025812	66867.0	Mm.150856	NM_025812	ENSMUSG00000032329	Hmg20a	1200004E06Rik|5730490E10Rik|Hmgxb1|Ibraf	high mobility group 20A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-26130193-4	chr2	26130115	26130315	+	793.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	AmnSINE1|SINE|Deu	-7404.0	NM_026495	67991.0	Mm.131074	NM_026495	ENSMUSG00000026932	Nacc2	0610020I02Rik|AI448087|Btbd14a|C030048H19Rik	nucleus accumbens associated 2, BEN and BTB (POZ) domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25653280-2	chr7	25653180	25653380	+	640.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007533, intron 1 of 8)	Lx8|LINE|L1	5481.0	NM_007533	12039.0	Mm.25848	NM_007533	ENSMUSG00000060376	Bckdha	-	branched chain ketoacid dehydrogenase E1, alpha polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120664732-4	chr8	120664604	120664804	+	862.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010926, intron 1 of 4)	intron (NM_010926, intron 1 of 4)	3408.0	NM_010926	18117.0	Mm.2136	NM_010926	ENSMUSG00000031819	Emc8	Cox4nb|Fam158b|Noc4	ER membrane protein complex subunit 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-42778839-2	chr19	42778739	42778939	+	650.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001362410)	promoter-TSS (NM_001362410)	-193.0	NM_001362410	192236.0	Mm.218381	NM_019424	ENSMUSG00000025188	Hps1	6030422N11Rik|BB405864|Gm21361|Hps|ep	HPS1, biogenesis of lysosomal organelles complex 3 subunit 1	protein-coding	-0.150529006038285	-0.397293247268372	0.251464638424208	-0.404125701290197	-0.14423734979096	-0.396421463399245	-0.400303545909344	-0.403607044525854	-1.86736394350832	0.465206366183432	1
Merged-chr9-7603506-4	chr9	7603383	7603583	+	857.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24748.0	NM_013903	30800.0	Mm.390121	NM_013903	ENSMUSG00000018620	Mmp20	-	matrix metallopeptidase 20 (enamelysin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-59328232-2	chr2	59328132	59328332	+	578.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 11 of 20)	intron (NM_175464, intron 11 of 20)	58450.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55570054-4	chr19	55569933	55570133	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360431, intron 8 of 8)	intron (NM_001360431, intron 8 of 8)	132171.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120727313-4	chr11	120727175	120727375	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347608)	promoter-TSS (NM_001347608)	6.0	NM_026428	67880.0	Mm.231091	NM_026428	ENSMUSG00000039450	Dcxr	0610038K04Rik|1810027P18Rik|XR	dicarbonyl L-xylulose reductase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-103267578-4	chr11	103267490	103267690	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016896)	promoter-TSS (NM_016896)	-189.0	NM_016896	53859.0	Mm.158981	NM_016896	ENSMUSG00000020941	Map3k14	Nik|aly	mitogen-activated protein kinase kinase kinase 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-186117361-4	chr1	186117259	186117459	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146106)	promoter-TSS (NM_146106)	-49.0	NM_146106	226791.0	Mm.257116	NM_146106	ENSMUSG00000039246	Lyplal1	BC027340|Q96AVO	lysophospholipase-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-87987575-4	chr11	87987454	87987654	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001168472)	promoter-TSS (NM_001168472)	-21.0	NM_026556	68097.0	Mm.246436	NM_026556	ENSMUSG00000020483	Dynll2	1700064A15Rik|6720463E02Rik|C87222|DLC8|DLC8b|Dlc2	dynein light chain LC8-type 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-65530892-3	chr3	65530830	65531030	+	783.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178892, intron 1 of 5)	intron (NM_178892, intron 1 of 5)	-1516.0	NR_027955	71004.0	Mm.475465	NM_001033527	ENSMUSG00000074580	4931440P22Rik	-	RIKEN cDNA 4931440P22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-38987686-4	chr1	38987615	38987815	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026850)	promoter-TSS (NM_026850)	-99.0	NM_026850	68833.0	Mm.28121	NM_026850	ENSMUSG00000026078	Pdcl3	1110061A19Rik|C80025|Viaf1	phosducin-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-165195558-2	chr1	165195458	165195658	+	612.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1120.0	NR_151712	108735.0	Mm.288369	NM_145512	ENSMUSG00000040848	Sft2d2	2010005O13Rik|AI506168|AW561909|cI-45	SFT2 domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-98887536-2	chr7	98887436	98887636	+	718.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_178635, exon 15 of 15)	3' UTR (NM_178635, exon 15 of 15)	48691.0	NM_001285795	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-82446745-4	chr12	82446633	82446833	+	986.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167983, intron 21 of 23)	ORR1A4|LTR|ERVL-MaLR	135384.0	NM_172579	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-93593640-2	chr3	93593546	93593746	+	577.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38529.0	NM_009112	20194.0	Mm.1	NM_009112	ENSMUSG00000041959	S100a10	42C|AA409961|AL024248|CAL12|CLP11|Cal1l|p10|p11	S100 calcium binding protein A10 (calpactin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-35404664-2	chr2	35404564	35404764	+	561.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010283, intron 8 of 8)	MTC|LTR|ERVL-MaLR	-7490.0	NM_001272040	74854.0	Mm.159338	NM_001080709	ENSMUSG00000079421	4930402F06Rik	-	RIKEN cDNA 4930402F06 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-20655041-5	chr14	20654954	20655154	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021508, intron 2 of 5)	intron (NM_021508, intron 2 of 5)	1486.0	NM_021508	59011.0	Mm.439911	NM_021508	ENSMUSG00000068697	Myoz1	2310001N11Rik|AV090278|FATZ|Myoz	myozenin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-156523209-4	chr2	156523107	156523307	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291122, intron 14 of 20)	intron (NM_001291122, intron 14 of 20)	-24369.0	NM_026661	68295.0	Mm.253648	NM_026661	ENSMUSG00000027628	Aar2	0610011L14Rik	AAR2 splicing factor homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-40326607-2	chr9	40326507	40326707	+	713.833374	f1_balb.idr|f1_c57bl6.idr	intron (NR_151734, intron 3 of 18)	intron (NR_151734, intron 3 of 18)	-5284.0	NM_001357622	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-23982625-4	chr16	23982507	23982707	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009744, intron 1 of 9)	intron (NM_009744, intron 1 of 9)	-1324.0	NM_001348026	12053.0	Mm.347398	NM_009744	ENSMUSG00000022508	Bcl6	Bcl5	B cell leukemia/lymphoma 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116006215-2	chr11	116006115	116006315	+	937.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001005608, intron 34 of 39)	intron (NM_001005608, intron 34 of 39)	6504.0	NM_016905	14635.0	Mm.2820	NM_016905	ENSMUSG00000020766	Galk1	AA409894|GALK|Gk|Glk|Glk1	galactokinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119235812-3	chr11	119235719	119235919	+	744.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175430, intron 3 of 18)	B3A|SINE|B2	7247.0	NM_175430	207607.0	Mm.189885	NM_175430	ENSMUSG00000039963	Ccdc40	B930008I02Rik	coiled-coil domain containing 40	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-73605969-2	chr13	73605869	73606069	+	712.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146047, intron 2 of 16)	intron (NM_146047, intron 2 of 16)	1967.0	NM_146047	218335.0	Mm.30099	NM_146047	ENSMUSG00000021610	Clptm1l	C130052I12Rik|Crr9	CLPTM1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-32559926-3	chr18	32559763	32559963	+	658.472229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001048207, exon 1 of 3)	5' UTR (NM_001048207, exon 1 of 3)	171.0	NM_001048207	71683.0	Mm.292145	NM_027863	ENSMUSG00000090523	Gypc	0610037F22Rik|Cd236r	glycophorin C	protein-coding	1.1781761556415	1.47521481956336	1.2017200019408	0.56244346906751	1.19104561213026	0.58350449472917	0.572961354900538	0.56387898156611	-1.81889080826576	0.279333452971439	0.782681636793864
Merged-chr10-42176310-1	chr10	42176210	42176410	+	556.0	f0_balb.idr	Intergenic	MTC|LTR|ERVL-MaLR	100432.0	NM_019740	56484.0	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-6190299-2	chr4	6190199	6190399	+	769.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026534)	promoter-TSS (NM_026534)	-806.0	NM_026534	68053.0	Mm.404043	NM_026534	ENSMUSG00000028243	Ubxn2b	3110003A22Rik|6430407D20Rik|AI451665|p37	UBX domain protein 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-7829937-3	chr9	7829886	7830086	+	708.200012	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007465, intron 2 of 7)	intron (NM_007465, intron 2 of 7)	6820.0	NM_001291503	11797.0	Mm.335659	NM_007465	ENSMUSG00000057367	Birc2	AW146227|Api1|Api2|Birc3|C-IAP1|C330006D17Rik|HIAP1|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF48|cIAP1|cIAP2|mcIAP1	baculoviral IAP repeat-containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-112259668-4	chr2	112259516	112259716	+	901.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172521)	promoter-TSS (NM_172521)	-325.0	NM_172521	213765.0	Mm.78965	NM_172521	ENSMUSG00000041358	Nutm1	4932438M10|Nut	NUT midline carcinoma, family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-146499780-4	chr3	146499678	146499878	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027617)	promoter-TSS (NM_027617)	-25.0	NM_027617	70951.0	Mm.383235	NM_027617	ENSMUSG00000028188	Spata1	4921536I21Rik|AV266943|SP-2	spermatogenesis associated 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-49251193-4	chr7	49251083	49251283	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175272, intron 1 of 37)	(T)n|Simple_repeat|Simple_repeat	4994.0	NM_175272	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-116595939-4	chr12	116595839	116596039	+	835.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011215, intron 2 of 22)	MTD-int|LTR|ERVL-MaLR	110219.0	NM_011215	19276.0	Mm.206054	NM_011215	ENSMUSG00000056553	Ptprn2	4930425H11Rik|IA2beta|PTP-NP|Phol|mKIAA0387|phogrin	protein tyrosine phosphatase, receptor type, N polypeptide 2	protein-coding	1.62543144782096	0.74143068699706	1.79629209435464	1.08297127464688	1.16529575577172	1.32975230312499	0.730676352319477	0.718654502975663	-1.46627327561854	0.315472842940884	0.817980640376335
Merged-chr15-5141985-3	chr15	5141899	5142099	+	887.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-1862.0	NM_001013367	105787.0	Mm.207004	NM_001013367	ENSMUSG00000050697	Prkaa1	AI194361|AI450832|AL024255|AMPKalpha1|C130083N04Rik	protein kinase, AMP-activated, alpha 1 catalytic subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-173586760-4	chr2	173586665	173586865	+	813.233337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027957, intron 13 of 14)	CpG	-8424.0	NM_027303	70065.0	Mm.425115	NM_027303	ENSMUSG00000027517	Ankrd60	1700019A24Rik|1700030G11Rik	ankyrin repeat domain 60	protein-coding	-0.291462876865187	-0.0361888476160807	0.94897911659732	-0.0807814967189704	-0.290107004104361	-0.268661222653084	-0.275537074360407	-0.281481471844786	-4.08444047783959	0.0678042515724161	1
Merged-chr19-42780334-1	chr19	42780234	42780434	+	772.0	f1_balb.idr	promoter-TSS (NM_001346703)	promoter-TSS (NM_001346703)	-356.0	NM_019424	192236.0	Mm.218381	NM_019424	ENSMUSG00000025188	Hps1	6030422N11Rik|BB405864|Gm21361|Hps|ep	HPS1, biogenesis of lysosomal organelles complex 3 subunit 1	protein-coding	2.02213848704498	2.70895354362148	1.79006336287331	3.21897750151397	2.88205598544168	2.5987573430129	3.03757436850657	2.86019958928121	0.545689517419263	0.480914538920219	0.929210758613564
Merged-chr18-55341740-1	chr18	55341640	55341840	+	607.0	f0_balb.idr	Intergenic	Intergenic	-349149.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-12466292-4	chr19	12466192	12466392	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_172442)	TTS (NM_172442)	5513.0	NM_010821	17476.0	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	5.02551653132128	4.10566136002213	3.69331508280245	5.25725452125895	4.84978794344097	5.57616206236873	5.30263300652231	5.46417468245691	0.761402912227719	0.0512053800152024	0.330420661216779
Merged-chr9-100643442-4	chr9	100643338	100643538	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357264)	promoter-TSS (NM_001357264)	-10.0	NM_009282	20842.0	Mm.42135	NM_009282	ENSMUSG00000037286	Stag1	AU045003|SA-1|Scc3	stromal antigen 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-78295298-3	chr10	78295153	78295353	+	902.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053014, intron 2 of 9)	intron (NM_053014, intron 2 of 9)	44954.0	NR_106119	102465765.0		NR_106119	ENSMUSG00000098885	Mir7659	Gm27433|mmu-mir-7659	microRNA 7659	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6337883-2	chr19	6337783	6337983	+	772.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001168489, intron 6 of 9)	intron (NM_001168489, intron 6 of 9)	2844.0	NM_008583	17283.0	Mm.12917	NM_008583	ENSMUSG00000024947	Men1	AW045611	multiple endocrine neoplasia 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-86162094-4	chr17	86161991	86162191	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5694.0	NM_011104	18754.0	Mm.24614	NM_011104	ENSMUSG00000045038	Prkce	5830406C15Rik|PKC[e]|PKCepsilon|Pkce|R75156	protein kinase C, epsilon	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-54806561-3	chr3	54806469	54806669	+	937.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133231, intron 1 of 2)	intron (NM_133231, intron 1 of 2)	1222.0	NM_133231	170767.0	Mm.185735	NM_133231	ENSMUSG00000036615	Rfxap	5730495K23Rik	regulatory factor X-associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-46808114-4	chr14	46808003	46808203	+	937.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_022023)	TTS (NM_022023)	14139.0	NM_022023	63985.0	Mm.87312	NM_022023	ENSMUSG00000062014	Gmfb	3110001H22Rik|3110001O16Rik|AI851627|C79176|D14Ertd630e	glia maturation factor, beta	protein-coding	1.04110555224591	0.455051727056663	0.445835657676236	1.38069703783031	0.850718002543997	0.457117119315568	0.952262450759341	0.439919939743299	-1.02061479366434	0.563731324491547	1
Merged-chr13-74640079-6	chr13	74639975	74640175	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030711, intron 1 of 18)	CpG	222.0	NM_030711	80898.0	Mm.83526	NM_030711	ENSMUSG00000021583	Erap1	A-LAP|ARTS-1|Arts1|ERAAP|PILSA|PILSAP	endoplasmic reticulum aminopeptidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-34504432-1	chr12	34504332	34504532	+	627.0	f0_c57.idr	intron (NM_001271386, intron 4 of 27)	intron (NM_001271386, intron 4 of 27)	24457.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-71039883-4	chr2	71039769	71039969	+	932.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145524, intron 1 of 9)	intron (NM_145524, intron 1 of 9)	15737.0	NM_145524	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-73302231-4	chr17	73302122	73302322	+	922.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	97074.0	NM_001033444	381122.0	Mm.81496	NM_001033444	ENSMUSG00000043705	Capn13	CANP 13|Gm943	calpain 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-107288648-2	chr3	107288548	107288748	+	833.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER68|LTR|ERVL	-2582.0	NM_001310705	229699.0	Mm.38384	NM_146136	ENSMUSG00000027896	Slc16a4	AW146050|MCT 5	solute carrier family 16 (monocarboxylic acid transporters), member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117200537-2	chr8	117200437	117200637	+	726.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081151, intron 9 of 10)	intron (NM_001081151, intron 9 of 10)	42402.0	NM_001081151	209239.0	Mm.132992	NM_001081151	ENSMUSG00000052557	Gan	A330045G18|gigaxonin	giant axonal neuropathy	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-90132922-2	chr3	90132822	90133022	+	881.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029937, intron 9 of 39)	intron (NM_029937, intron 9 of 39)	28790.0	NM_029937	77595.0	Mm.159949	NM_029937	ENSMUSG00000027939	Nup210l	4930548O11Rik|R26-EGFP|Tg(Gt(ROSA)26Sor-EGFP)130910Eps	nucleoporin 210-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-21034678-4	chr5	21034584	21034784	+	975.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001356590, exon 1 of 19)	5' UTR (NM_001356590, exon 1 of 19)	563.0	NM_001356592	19248.0	Mm.319117	NM_011203	ENSMUSG00000028771	Ptpn12	P19-PTP|PTP-P19|PTP-PEST|PTPG1	protein tyrosine phosphatase, non-receptor type 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-50452601-4	chr9	50452486	50452686	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41939.0	NM_029639	76509.0	Mm.29959	NM_029639	ENSMUSG00000032068	Plet1	0610037B23Rik|1600029D21Rik|AA407923|AU043048	placenta expressed transcript 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35247043-3	chr17	35246986	35247186	+	767.133301	f1_balb.idr|f1_c57bl6.idr	exon (NM_001252457, exon 5 of 11)	exon (NM_001252457, exon 5 of 11)	3011.0	NR_105941	102465589.0		NR_105941	ENSMUSG00000098499	Mir6975	Gm27693|mmu-mir-6975	microRNA 6975	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-122408644-4	chr2	122408513	122408713	+	954.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	-32207.0	NM_172980	269346.0	Mm.29510	NM_172980	ENSMUSG00000027219	Slc28a2	2010208B10Rik|B430217P18|BB152493|Cnt2|SPNT	solute carrier family 28 (sodium-coupled nucleoside transporter), member 2	protein-coding	-1.8418762459921	-1.8125357239735	-1.82140854000656	-1.82869693527674	-1.56059678980999	-1.8106129477253	-1.81939992894326	-1.82739231600805	1.3620893379502	0.699511506488145	1
Merged-chr4-88523474-2	chr4	88523374	88523574	+	748.333313	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010510)	promoter-TSS (NM_010510)	-680.0	NM_010510	15977.0	Mm.1245	NM_010510	ENSMUSG00000048806	Ifnb1	IFN-beta|IFNB|Ifb	interferon beta 1, fibroblast	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-60795028-2	chr9	60794928	60795128	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357408, intron 1 of 19)	intron (NM_001357408, intron 1 of 19)	586.0	NM_001357407	72565.0	Mm.68819	NM_028283	ENSMUSG00000034485	Uaca	2700059D02Rik|nucling	uveal autoantigen with coiled-coil domains and ankyrin repeats	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-113740737-4	chr6	113740671	113740871	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024206)	promoter-TSS (NM_024206)	-90.0	NM_024206	110379.0	Mm.29296	NM_024206	ENSMUSG00000030298	Sec13	1110003H02Rik|Sec13l1|Sec13r	SEC13 homolog, nuclear pore and COPII coat complex component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-44292769-3	chr4	44292676	44292876	+	825.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8141.0	NM_010790	17279.0	Mm.268668	NM_010790	ENSMUSG00000035683	Melk	AI327312|MPK38|mKIAA0175	maternal embryonic leucine zipper kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-142779541-4	chr6	142779447	142779647	+	783.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	22861.0	NM_009908	12764.0	Mm.3820	NM_009908	ENSMUSG00000030282	Cmas	AW208911|CMPNeu5Ac|D6Bwg0250e	cytidine monophospho-N-acetylneuraminic acid synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4222726-2	chr19	4222626	4222826	+	639.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001310038, exon 4 of 4)	3' UTR (NM_001310038, exon 4 of 4)	8337.0	NM_001310039	56708.0	Mm.347919	NM_019952	ENSMUSG00000040663	Clcf1	BSF-3|Bsf3|CLC|NNT-1	cardiotrophin-like cytokine factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-61076242-2	chr18	61076142	61076342	+	682.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008809, intron 14 of 22)	intron (NM_008809, intron 14 of 22)	-29330.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-21424514-4	chr11	21424399	21424599	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53232.0	NM_001290634	216558.0	Mm.28877	NM_139297	ENSMUSG00000001891	Ugp2	UDPGP|UGPase	UDP-glucose pyrophosphorylase 2	protein-coding	2.66532272973235	2.87192582799476	3.13804659695682	3.23978351170782	3.84590031295303	3.86878434286254	3.0515060833147	4.02366104424699	1.19578669729827	0.0363308417614787	0.270407840852495
Merged-chr7-25080412-2	chr7	25080312	25080512	+	617.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001168506, exon 3 of 3)	exon (NM_001168506, exon 3 of 3)	3605.0	NM_175477	232976.0	Mm.41568	NM_175477	ENSMUSG00000045252	Zfp574	A630056B21Rik|Znf574	zinc finger protein 574	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-100403548-5	chr15	100403593	100403793	+	949.1099849999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008732, intron 9 of 16)	intron (NM_008732, intron 9 of 16)	19362.0	NM_001146161	18174.0	Mm.234608	NM_008732	ENSMUSG00000023030	Slc11a2	DCT1|DMT1|Nramp2|mk|van	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2	protein-coding	0.206339769471841	0.0718887352604843	0.0652418727024188	0.0600870815122336	0.661395483088769	0.948617154275234	0.260550237387907	0.0609893298441441	3.38021873997797	0.0973533154611674	1
Merged-chr10-28425575-3	chr10	28425484	28425684	+	799.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359356, intron 7 of 30)	MTEa|LTR|ERVL-MaLR	-242776.0	NM_001305663	210757.0	Mm.123021	NM_178666	ENSMUSG00000049109	Themis	E430004N04Rik|Gasp|Spot|Tsepa|thylex	thymocyte selection associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-45316551-2	chr9	45316451	45316651	+	578.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2549.0	NM_001013373	214531.0	Mm.394987	NM_001013373	ENSMUSG00000037129	Tmprss13	BC010843|Tpmrss13	transmembrane protease, serine 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-152343541-4	chr2	152343463	152343663	+	934.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175093, intron 1 of 3)	PB1D10|SINE|Alu	497.0	NM_175093	228775.0	Mm.276018	NM_144554	ENSMUSG00000032715	Trib3	Ifld2|Nipk|SINK|SKIP3|TRB-3|Trb3	tribbles pseudokinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-108050883-2	chr9	108050783	108050983	+	616.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_032543)	TTS (NM_032543)	1619.0	NM_001357682	331026.0	Mm.22554	NM_177910	ENSMUSG00000070284	Gmppb	AI317178|E430010H19	GDP-mannose pyrophosphorylase B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-79814529-2	chr15	79814429	79814629	+	589.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013360, intron 4 of 7)	B4A|SINE|B4	-9820.0	NM_030689	73340.0	Mm.38438	NM_030689	ENSMUSG00000022421	Nptxr	1200009K17Rik|1700036C17Rik|5730406O18Rik|AI452369|AI785356|D15Bwg0580e|NPR|Npcd	neuronal pentraxin receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-42946126-3	chr4	42946025	42946225	+	732.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3742.0	NM_001355438	56323.0	Mm.20437	NM_019874	ENSMUSG00000036052	Dnajb5	1110058L06Rik|AI462558|Hsc40|Hsp40-3	DnaJ heat shock protein family (Hsp40) member B5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-10538362-2	chr16	10538262	10538462	+	716.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021428, intron 1 of 1)	intron (NM_021428, intron 1 of 1)	4692.0	NM_021428	58239.0	Mm.353006	NM_021428	ENSMUSG00000038055	Dexi	1810029J14Rik|AI836170|AW413143|D16Bwg0586e|Myle	dexamethasone-induced transcript	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-117494414-7	chr5	117494273	117494473	+	933.480957	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001312914, intron 1 of 19)	intron (NM_001312914, intron 1 of 19)	80371.0	NM_001312914	333050.0	Mm.437947	NM_001034873	ENSMUSG00000061578	Ksr2	-	kinase suppressor of ras 2	protein-coding	1.84310132954145	2.86844114171555	2.44891174218199	1.97437319728706	3.1432796771335	3.14942892114561	4.95048201979107	3.67059911185509	2.61852752469376	0.0002401824180707	0.00621057899140572
Merged-chr6-72933163-4	chr6	72933064	72933264	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25068.0	NM_001039392	19240.0	Mm.3532	NM_025284	ENSMUSG00000079523	Tmsb10	Ptmb10|Tb10	thymosin, beta 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-12806413-3	chr19	12806313	12806513	+	949.2666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134152, intron 2 of 8)	intron (NM_134152, intron 2 of 8)	7834.0	NM_134152	107321.0	Mm.313136	NM_134152	ENSMUSG00000024696	Lpxn	4933402K05Rik|A530083L21Rik|AV278559|LDPL	leupaxin	protein-coding	2.31741761453536	2.29103486805279	1.81071805601983	3.10817836206799	2.90519803387197	2.87007609021003	3.0617911052563	3.12371414164151	0.988303569429728	0.182900169286113	0.657673196132302
Merged-chr4-141795765-1	chr4	141795665	141795865	+	1000.0	f1_balb.idr	intron (NM_001355176, intron 1 of 8)	ID_B1|SINE|B4	2153.0	NM_001277932	12371.0	Mm.88829	NM_015733	ENSMUSG00000028914	Casp9	AI115399|APAF-3|AW493809|CASP-9|Caspase-9|ICE-LAP6|Mch6	caspase 9	protein-coding	-1.26550836321643	-1.23538490674683	-1.24673049817958	-1.25605010478787	-1.26497736998827	-0.580802564315158	-1.24416210496749	-1.25438189966081	2.74054745292391	0.426663645876262	1
Merged-chr14-20709290-2	chr14	20709190	20709390	+	645.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027996, intron 1 of 25)	intron (NM_027996, intron 1 of 25)	1738.0	NM_001252082	268721.0	Mm.275082	NM_027996	ENSMUSG00000021819	Zswim8	2310021P13Rik|4832404P21Rik|Kiaa0913|mKIAA0913	zinc finger SWIM-type containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-18670050-3	chr19	18669976	18670176	+	761.333313	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026120)	promoter-TSS (NM_026120)	-704.0	NM_026120	67383.0	Mm.306602	NM_026120	ENSMUSG00000024726	Carnmt1	2410127L17Rik	carnosine N-methyltransferase 1	protein-coding	1.21476425683278	0.916974143372019	2.12387321555002	1.79344453224626	2.09297939083227	0.921101330151237	1.49263014376449	0.886318728759689	-0.426499877652024	0.751859655578245	0.998431161219273
Merged-chr5-74957457-4	chr5	74957357	74957557	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045866, intron 2 of 4)	intron (NR_045866, intron 2 of 4)	8263.0	NR_045866	619945.0	Mm.359372	NM_001037908	ENSMUSG00000072874	Gm6116	EG619945	predicted gene 6116	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-99568962-4	chr9	99568853	99569053	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166138)	promoter-TSS (NM_001166138)	-54.0	NM_028768	74125.0	Mm.234823	NM_028768	ENSMUSG00000032468	Armc8	1200015K23Rik|Gid5|HSPC056	armadillo repeat containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166711104-4	chr2	166711011	166711211	+	837.229187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	2721.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-130638243-1	chr2	130638143	130638343	+	752.0	f1_c57bl6.idr	intron (NM_001291027, intron 1 of 4)	intron (NM_001291027, intron 1 of 4)	4601.0	NM_197945	241638.0	Mm.440130	NM_197945	ENSMUSG00000037703	Lzts3	Prosapip1	leucine zipper, putative tumor suppressor family member 3	protein-coding	-1.0197847170788	-0.997907469650695	-1.01122437597739	-0.133164474989291	-1.01910344542556	-0.995021640496898	-1.0082097202833	-1.01474285911258	-3.16350991712545	0.326819850740887	1
Merged-chr6-65115046-4	chr6	65114951	65115151	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001355250, exon 24 of 24)	3' UTR (NM_001355250, exon 24 of 24)	29679.0	NM_019455	54486.0	Mm.410688	NM_019455	ENSMUSG00000029919	Hpgds	H-PGDS|Ptgds2	hematopoietic prostaglandin D synthase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-17133166-2	chr18	17133066	17133266	+	611.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_130158, intron 7 of 7)	intron (NR_130158, intron 7 of 7)	97658.0	NR_130158	75433.0	Mm.60907	NR_130158	ENSMUSG00000087170	1700001G01Rik	-	RIKEN cDNA 1700001G01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-47070201-4	chr7	47070113	47070313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	13011.0	NR_106023	102465639.0		NR_106023	ENSMUSG00000098960	Mir7056	Gm27696|mmu-mir-7056	microRNA 7056	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-41954190-3	chr18	41954106	41954306	+	600.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3012.0	NM_029942	77619.0	Mm.30649	NM_029942	ENSMUSG00000056671	Prelid2	1700003A01Rik|C330008K14Rik	PRELI domain containing 2	protein-coding	1.18342549432529	1.32824578567097	1.28243737920602	0.86100263884994	1.97299806022803	1.50570139232263	2.00574541001317	0.863402102664368	1.77925939077955	0.167538714242238	0.633485087165721
Merged-chr11-70845233-2	chr11	70845133	70845333	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291141, intron 1 of 16)	G-rich|Low_complexity|Low_complexity	472.0	NM_001291142	54189.0	Mm.7087	NM_019400	ENSMUSG00000020817	Rabep1	Rab5ep|rabaptin-5|rabaptin-5alpha	rabaptin, RAB GTPase binding effector protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111837609-2	chr12	111837509	111837709	+	635.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011625, intron 9 of 16)	intron (NM_011625, intron 9 of 16)	23439.0	NM_026752	68520.0	Mm.390497	NM_026752	ENSMUSG00000021286	Zfyve21	1110013H04Rik|AW558780|C85416	zinc finger, FYVE domain containing 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115374306-3	chr11	115374204	115374404	+	617.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-6548.0	NM_001346774	217310.0	Mm.205707	NM_175454	ENSMUSG00000034586	Hid1	C630004H02Rik	HID1 domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-126438061-4	chr4	126437983	126438183	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001317173, exon 19 of 19)	3' UTR (NM_001317173, exon 19 of 19)	-8541.0	NM_153402	214150.0	Mm.440915	NM_153402	ENSMUSG00000028842	Ago3	AW048688|C130014L07Rik|Eif2c3	argonaute RISC catalytic subunit 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-88714370-4	chr4	88714255	88714455	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	8153.0	NM_172871	242521.0	Mm.260601	NM_172871	ENSMUSG00000070923	Klhl9	8030469P05|C530050O22Rik|mKIAA1354	kelch-like 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-103260564-4	chr15	103260320	103260520	+	971.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2017.0	NM_001302341	18022.0	Mm.457989	NM_008685	ENSMUSG00000058794	Nfe2	NF-E2|NF-E2/P45|p45|p45NFE2|p45nf-e2	nuclear factor, erythroid derived 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28163878-1	chr17	28163778	28163978	+	599.0	f0_c57.idr	intron (NM_001004366, intron 10 of 21)	intron (NM_001004366, intron 10 of 21)	-13318.0	NM_001357995	224656.0	Mm.267359	NM_172617	ENSMUSG00000024220	Zfp523	2810027J07|BC025615|Znf76	zinc finger protein 523	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-51472536-2	chr6	51472436	51472636	+	699.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355002, intron 2 of 5)	intron (NM_001355002, intron 2 of 5)	1284.0	NM_001355002	12417.0	Mm.280968	NM_007624	ENSMUSG00000029836	Cbx3	HP1g|M32	chromobox 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-67347328-7	chr17	67347234	67347434	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	7125.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98943993-2	chr11	98943893	98944093	+	993.400024	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177303, intron 1 of 8)	intron (NM_001177303, intron 1 of 8)	4282.0	NM_001177303	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-79071655-2	chr11	79071555	79071755	+	816.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013571, intron 2 of 17)	intron (NM_013571, intron 2 of 17)	-11819.0	NM_001348207	16706.0	Mm.4745	NM_013571	ENSMUSG00000018334	Ksr1	AW492498|B-KSR1|D11Bhm183e|D11Bhm184e|Ksr|RSU2|hb|mKSR1	kinase suppressor of ras 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-135669999-4	chr1	135669903	135670103	+	992.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50060.0	NM_001360782	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-91489873-2	chr6	91489773	91489973	+	745.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009531, exon 16 of 16)	3' UTR (NM_009531, exon 16 of 16)	16122.0	NM_028766	74122.0	Mm.38801	NM_028766	ENSMUSG00000030095	Tmem43	1200015A22Rik|LUMA	transmembrane protein 43	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-25694777-2	chr14	25694677	25694877	+	800.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_134084, intron 1 of 5)	intron (NM_134084, intron 1 of 5)	607.0	NM_134084	105675.0	Mm.41656	NM_134084	ENSMUSG00000021868	Ppif	AW457192|CyP-D|CyP-F|CypD|PPIase	peptidylprolyl isomerase F (cyclophilin F)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-165433070-1	chr1	165432970	165433170	+	608.0	f1_balb.idr	intron (NM_028759, intron 1 of 18)	RMER3D-int|LTR|ERVK	27393.0	NM_028759	74106.0	Mm.227605	NM_028759	ENSMUSG00000026571	Dcaf6	1200006M05Rik|Iqwd1|PC326	DDB1 and CUL4 associated factor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-130025996-3	chr5	130025916	130026116	+	823.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1635.0	NM_133768	109900.0	Mm.23869	NM_133768	ENSMUSG00000025533	Asl	2510006M18Rik|ASAL	argininosuccinate lyase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-154118572-4	chr1	154118471	154118671	+	932.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-82616.0	NM_001204908	100503355.0	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	Gm10178|Gm203	zinc finger protein 648	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132806384-4	chr4	132806286	132806486	+	840.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR24|LTR|ERV1	-10022.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-140102331-4	chr7	140102216	140102416	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001286217, exon 1 of 6)	exon (NM_001286217, exon 1 of 6)	125.0	NM_001286217	69064.0	Mm.41915	NM_026928	ENSMUSG00000025466	Fuom	Fucu|Le51	fucose mutarotase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32130641-3	chr2	32130550	32130750	+	589.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20498.0	NM_172661	227723.0	Mm.25504	NM_172661	ENSMUSG00000039262	Prrc2b	5830434P21Rik|AI173903|Bat2l|Bat2l1|D430039P21|mKIAA0515	proline-rich coiled-coil 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80822541-2	chr10	80822441	80822641	+	812.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-4115.0	NM_001301034	18245.0	Mm.398119	NM_008753	ENSMUSG00000035242	Oaz1	AZ-1|AZ1|Antizyme|ODC-Az|Oaz	ornithine decarboxylase antizyme 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-95724379-4	chr16	95724273	95724473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13A1|LTR|ERVK	21966.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-75410134-4	chr9	75410035	75410235	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027418)	promoter-TSS (NM_027418)	-49.0	NR_040719	71274.0	Mm.399152	NR_040719	ENSMUSG00000097021	4933433G15Rik	4921522K19Rik	RIKEN cDNA 4933433G15 gene	ncRNA	5.87956921694475	5.47963382130732	5.98642008243686	5.15084055715477	5.90138838790584	6.1457723800767	5.59691690953262	6.08202356316816	0.312459966461369	0.24525361291454	0.744321968233217
Merged-chr1-78898557-2	chr1	78898457	78898657	+	775.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_151519, intron 3 of 3)	intron (NR_151519, intron 3 of 3)	81646.0	NM_021342	57814.0	Mm.24386	NM_021342	ENSMUSG00000047330	Kcne4	AW487937|MiRP3	potassium voltage-gated channel, Isk-related subfamily, gene 4	protein-coding	0.554037155888165	0.591971543937549	1.46216471745268	0.570213908659607	1.01623245705673	1.43745699531971	0.582481913899249	1.41690584536777	1.20121769891341	0.46809045853944	0.924409990887115
Merged-chr18-37883664-4	chr18	37883562	37883762	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007858, intron 16 of 26)	intron (NM_007858, intron 16 of 26)	-29002.0	NR_105945	102465592.0		NR_105945	ENSMUSG00000098706	Mir6979	Gm27524|mmu-mir-6979	microRNA 6979	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-118162903-1	chr10	118162803	118163003	+	924.5	f0_balb.idr	intron (NM_001162904, intron 12 of 14)	intron (NM_001162904, intron 12 of 14)	21116.0	NM_010785	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	2.08359233287144	2.56587183424942	1.33220349191927	1.28225119935117	4.42578329921661	3.54074156628468	2.48783733043676	3.31080659144721	3.07158264119677	0.000249828389771707	0.00640478850530115
Merged-chr5-136198359-2	chr5	136198259	136198459	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025774, intron 1 of 5)	B1F1|SINE|Alu	595.0	NM_025774	66801.0	Mm.425295	NM_025774	ENSMUSG00000039737	Prkrip1	8430424D23Rik|C114	Prkr interacting protein 1 (IL11 inducible)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-59755391-4	chr9	59755272	59755472	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173018, intron 1 of 43)	intron (NM_173018, intron 1 of 43)	4198.0	NM_173018	270163.0	Mm.249545	NM_173018	ENSMUSG00000039585	Myo9a	4732465J09Rik|C130068I12Rik|C230003M11	myosin IXa	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-130174133-2	chr5	130174033	130174233	+	892.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359233, intron 1 of 7)	intron (NM_001359233, intron 1 of 7)	2314.0	NM_001359233	56715.0	Mm.288639	NM_019983	ENSMUSG00000025340	Rabgef1	Rab5ef|Rabex5|Rin2	RAB guanine nucleotide exchange factor (GEF) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-80524855-3	chr18	80524756	80524956	+	893.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19690.0	NR_028424	100039348.0	Mm.254722	NR_028424		Gm2176	A430076E10Rik	glucosamine-6-phosphate deaminase 1 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-30632361-2	chr15	30632261	30632461	+	880.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355502, intron 5 of 21)	intron (NM_001355502, intron 5 of 21)	-406765.0	NR_045186	73784.0	Mm.66947	NR_045186	ENSMUSG00000115474	4930430F21Rik	-	RIKEN cDNA 4930430F21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-68013340-4	chr10	68013215	68013415	+	767.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359319, intron 6 of 11)	intron (NM_001359319, intron 6 of 11)	33745.0	NM_001359319	170799.0	Mm.209844	NM_133244	ENSMUSG00000037846	Rtkn2	B130039D23Rik|Mbf|Plekhk1	rhotekin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-61762116-4	chr11	61761975	61762175	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164242)	promoter-TSS (NM_001164242)	13.0	NM_144806	212627.0	Mm.27703	NM_144806	ENSMUSG00000020528	Prpsap2	A230054F23Rik	phosphoribosyl pyrophosphate synthetase-associated protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-120253958-4	chr1	120253872	120254072	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085409, intron 2 of 5)	intron (NM_001085409, intron 2 of 5)	11308.0	NM_133186	68428.0	Mm.181033	NM_133186	ENSMUSG00000026389	Steap3	1010001D01Rik|Tsap6|pHyde	STEAP family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-149445412-3	chr3	149445317	149445517	+	824.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(GA)n|Simple_repeat|Simple_repeat	170680.0	NR_040591	381482.0	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-93472759-2	chr2	93472659	93472859	+	675.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A2|LTR|ERVL-MaLR	-9809.0	NM_001136055	12521.0	Mm.4261	NM_007656	ENSMUSG00000027215	Cd82	AA682076|AL023070|C33|IA4|Kai1|Tspan27	CD82 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-156002012-4	chr1	156001888	156002088	+	905.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-28733.0	NM_001039184	74081.0	Mm.260247	NM_001039184	ENSMUSG00000033671	Cep350	4933409L06Rik|6430546F08Rik	centrosomal protein 350	protein-coding	3.02591954834048	2.88295743663381	3.18824318114247	3.25715675642998	2.79930706590802	3.12870944981632	2.68271493293453	3.03094956905122	-0.321603154424469	0.606970986739627	0.974576632476413
Merged-chr8-11219515-3	chr8	11219403	11219603	+	983.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009931, intron 33 of 51)	intron (NM_009931, intron 33 of 51)	-93302.0	NM_009932	12827.0	Mm.181021	NM_009932	ENSMUSG00000031503	Col4a2	Col4a-2	collagen, type IV, alpha 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-114137756-3	chr2	114137660	114137860	+	930.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290788, intron 16 of 33)	L1M3|LINE|L1	12810.0	NR_105968	102465982.0		NR_105968	ENSMUSG00000098464	Mir7002	Gm27429|mmu-mir-7002	microRNA 7002	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-54535144-4	chr11	54535047	54535247	+	803.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252494, intron 1 of 28)	intron (NM_001252494, intron 1 of 28)	12302.0	NM_001252496	192786.0	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-20362493-2	chr16	20362393	20362593	+	583.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013790, intron 23 of 29)	intron (NM_013790, intron 23 of 29)	-37089.0	NM_183158	224044.0	Mm.276400	NM_183158	ENSMUSG00000022818	Cyp2ab1	EG224044|F730023N20	cytochrome P450, family 2, subfamily ab, polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-107668734-4	chr7	107668640	107668840	+	959.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357437, intron 1 of 23)	intron (NM_001357437, intron 1 of 23)	3262.0	NM_001357436	19024.0	Mm.2817	NM_008905	ENSMUSG00000036528	Ppfibp2	Cclp1	PTPRF interacting protein, binding protein 2 (liprin beta 2)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-119756900-2	chr8	119756800	119757000	+	687.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026922, intron 26 of 26)	B4A|SINE|B4	21516.0	NM_028883	74347.0	Mm.358759	NM_028883	ENSMUSG00000034105	Tldc1	4632415K11Rik|Kiaa1609	TBC/LysM associated domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-93961663-8	chr10	93961559	93961759	+	934.5729369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001304572, exon 12 of 12)	3' UTR (NM_001304572, exon 12 of 12)	2204.0	NR_029764	723908.0		NR_029764	ENSMUSG00000065607	Mir331	Mirn331|mmu-mir-331	microRNA 331	ncRNA	3.25302497345116	2.8157350909684	2.71507073460065	2.95976075087529	2.24011218602769	4.06308211830931	1.5442360239325	3.30726153226145	0.310091861113564	0.696046709016268	0.997923870727665
Merged-chr6-31189216-2	chr6	31189116	31189316	+	626.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_110470, intron 1 of 2)	intron (NR_110470, intron 1 of 2)	29258.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-110633594-2	chr9	110633494	110633694	+	892.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183276, intron 27 of 53)	intron (NM_183276, intron 27 of 53)	2521.0	NR_106186	102466885.0		NR_106186	ENSMUSG00000099275	Mir8107	Gm27455|mmu-mir-8107	microRNA 8107	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-84829238-3	chr10	84829140	84829340	+	932.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024918, intron 4 of 17)	ORR1E|LTR|ERVL-MaLR	-8908.0	NM_027689	71137.0	Mm.79070	NM_027689	ENSMUSG00000020037	Rfx4	4933412G19Rik|NYD-sp10	regulatory factor X, 4 (influences HLA class II expression)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102381839-4	chr12	102381694	102381894	+	959.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177620, intron 7 of 9)	MER63A|DNA|hAT-Blackjack	58019.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-91142907-3	chr10	91142824	91143024	+	721.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18961.0	NM_133668	18674.0	Mm.298	NM_133668	ENSMUSG00000061904	Slc25a3	5730556H19Rik|PTP|Phc	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-37141167-4	chr10	37141086	37141286	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2260.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-147051065-3	chr5	147050961	147051161	+	972.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080795, intron 1 of 9)	intron (NM_080795, intron 1 of 9)	25511.0	NM_080795	140887.0	Mm.272203	NM_080795	ENSMUSG00000016520	Lnx2	9630046H24|AW209022	ligand of numb-protein X 2	protein-coding	3.0145394728501	2.67310417733194	2.46386447689661	2.11630227668526	3.03836288672939	2.69242139440067	2.48272391703588	2.12665754143418	0.0393902543463414	0.959016937294307	0.998431161219273
Merged-chr2-113440874-4	chr2	113440767	113440967	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285459)	promoter-TSS (NM_001285459)	-197.0	NM_001285459	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-143731069-3	chr5	143730975	143731175	+	842.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029749, intron 1 of 17)	intron (NM_029749, intron 1 of 17)	1205.0	NM_029749	76800.0	Mm.259620	NM_029749	ENSMUSG00000051306	Usp42	2410140K03Rik|3110031A07Rik|A630018G05Rik|D5Ertd591e	ubiquitin specific peptidase 42	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-70472055-2	chr18	70471948	70472148	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289649)	promoter-TSS (NM_001289649)	-406.0	NM_029019	170461.0	Mm.83623	NM_029019	ENSMUSG00000079608	Stard6	1700011K09Rik|4833424I06Rik|4933429L05Rik|AI644424	StAR-related lipid transfer (START) domain containing 6	protein-coding	3.51129850277405	3.99019827909245	2.9728938939849	3.87913151043377	3.16367501966192	3.95135152370014	4.01323257605562	2.89959118074769	-0.0826890208648558	0.88319004121596	0.998431161219273
Merged-chr9-66131111-1	chr9	66131011	66131211	+	616.0	f0_balb.idr	intron (NM_001359210, intron 1 of 3)	intron (NM_001359210, intron 1 of 3)	4500.0	NM_026635	68250.0	Mm.27107	NM_026635	ENSMUSG00000032381	Fam96a	5730536A07Rik	family with sequence similarity 96, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-102568776-3	chr4	102568691	102568891	+	892.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019840, intron 5 of 14)	intron (NM_019840, intron 5 of 14)	-1269.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-81155170-4	chr7	81155064	81155264	+	987.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004184, intron 11 of 17)	intron (NM_001004184, intron 11 of 17)	40365.0	NM_001004184	434203.0	Mm.389909	NM_001004184	ENSMUSG00000025726	Slc28a1	Cnt1	solute carrier family 28 (sodium-coupled nucleoside transporter), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-61681213-4	chr9	61681112	61681312	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	233298.0	NM_018853	56040.0	Mm.3158	NM_018853	ENSMUSG00000007892	Rplp1	2410042H16Rik|Arpp1|C430017H15Rik	ribosomal protein, large, P1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-4599080-2	chr9	4598980	4599180	+	599.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113181, intron 4 of 10)	Lx|LINE|L1	197154.0	NM_001113180	14802.0	Mm.209263	NM_019691	ENSMUSG00000025892	Gria4	GluA4|GluR-D|Glur-4|Glur4|Gluralpha4|spkw1	glutamate receptor, ionotropic, AMPA4 (alpha 4)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-50098499-1	chr17	50098399	50098599	+	544.0	f1_balb.idr	intron (NM_181397, intron 3 of 9)	intron (NM_181397, intron 3 of 9)	91998.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	-0.0485064361505165	-0.471943462169752	-0.475149030347209	-0.327691629958373	-0.48105781045006	-0.471217818739442	-0.168812829871507	-0.325149287567274	-0.434821229635267	0.860255694208414	1
Merged-chr2-173562125-2	chr2	173561986	173562186	+	751.208374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16255.0	NM_001199955	70065.0	Mm.425115	NM_027303	ENSMUSG00000027517	Ankrd60	1700019A24Rik|1700030G11Rik	ankyrin repeat domain 60	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6362728-2	chr19	6362628	6362828	+	621.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011750)	promoter-TSS (NM_011750)	-962.0	NM_011750	22668.0	Mm.256422	NM_011750	ENSMUSG00000024949	Sf1	BBP|MZFM|WBP4|Zfp162	splicing factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-48821626-4	chr9	48821529	48821729	+	949.033325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033324, intron 2 of 6)	intron (NM_001033324, intron 2 of 6)	14316.0	NM_001033324	235320.0	Mm.457803	NM_001033324	ENSMUSG00000066687	Zbtb16	AI467657|PLZF|Zfp145|lu	zinc finger and BTB domain containing 16	protein-coding	3.20996833249625	3.22483325231157	3.68160699364038	2.92463653103942	3.49782898488488	3.44375659204877	3.24099368666609	2.93982026128865	0.0175071254773377	0.975833990541484	0.998431161219273
Merged-chr9-59746548-2	chr9	59746448	59746648	+	825.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001172069, intron 1 of 2)	5S|rRNA|rRNA	4101.0	NM_001172069	71599.0	Mm.279070	NM_027838	ENSMUSG00000051705	Senp8	9130010J17Rik|AU020827|Den1|Nedp1|Prsc2	SUMO/sentrin specific peptidase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-136930960-4	chr6	136930832	136931032	+	946.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301308, intron 2 of 4)	intron (NM_001301308, intron 2 of 4)	8595.0	NM_001301303	11857.0	Mm.2241	NM_007486	ENSMUSG00000030220	Arhgdib	D4|Gdid4|Ly-GDI	Rho, GDP dissociation inhibitor (GDI) beta	protein-coding	3.76144659724201	3.19745485038715	4.71032527106786	4.63056877123752	3.35572071466988	3.22352044894433	4.57823528657788	4.61391100719165	-0.15273043708783	0.778213716014084	0.998431161219273
Merged-chr17-79713786-2	chr17	79713686	79713886	+	825.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_009994, exon 2 of 3)	exon (NM_009994, exon 2 of 3)	1255.0	NM_009994	13078.0	Mm.214016	NM_009994	ENSMUSG00000024087	Cyp1b1	CP1B|P4501b1	cytochrome P450, family 1, subfamily b, polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-62924862-2	chr11	62924769	62924969	+	943.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26324.0	NM_025496	66338.0	Mm.46166	NM_025496	ENSMUSG00000042200	Cdrt4	1700019I23Rik	CMT1A duplicated region transcript 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134606739-2	chr6	134606639	134606839	+	659.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	25749.0	NM_026345	67729.0	Mm.57648	NM_026345	ENSMUSG00000032718	Mansc1	9130403P13Rik	MANSC domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-90245466-4	chr3	90245373	90245573	+	953.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1961.0	NM_030080	78284.0	Mm.299952	NM_030080	ENSMUSG00000027938	Creb3l4	1700012K17Rik|5330432F22Rik|AIBZIP|AV040530|AV258827|CREB4|JAL|TISP40|acre1	cAMP responsive element binding protein 3-like 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-98699637-4	chr15	98699553	98699753	+	968.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8574.0	NM_153518	105833.0	Mm.26205	NM_153518	ENSMUSG00000003354	Ccdc65	4933417K04Rik|AI428139|AU020178|NYD-SP28	coiled-coil domain containing 65	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-18781432-4	chr13	18781336	18781536	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172120, intron 4 of 28)	intron (NM_172120, intron 4 of 28)	64144.0	NM_172120	218035.0	Mm.27389	NM_172120	ENSMUSG00000041236	Vps41	AI317346|Vam2|mVam2	VPS41 HOPS complex subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-4445664-4	chr7	4445574	4445774	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290409)	promoter-TSS (NM_001290409)	-17.0	NM_001290411	108841.0	Mm.413106	NM_175372	ENSMUSG00000008435	Rdh13	8430425D21Rik	retinol dehydrogenase 13 (all-trans and 9-cis)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-165644558-4	chr1	165644459	165644659	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10018.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-172478185-4	chr1	172478089	172478289	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029612, exon 4 of 4)	exon (NM_029612, exon 4 of 4)	2829.0	NM_029612	98365.0	Mm.150050	NM_029612	ENSMUSG00000026548	Slamf9	2310026I04Rik|AI462096|CD2F-10|CD84-H1|Cd2f10|SF2001	SLAM family member 9	protein-coding	1.23514490140836	0.915046981374091	1.803250494339	0.452929773237877	0.438327641551216	0.478724087000573	0.881791664995908	0.454708200418621	-3.14596066716173	0.0713433277582156	0.402494384778095
Merged-chr7-142340262-4	chr7	142340167	142340367	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177265, intron 3 of 3)	intron (NM_177265, intron 3 of 3)	31992.0	NM_177265	320802.0	Mm.154486	NM_177265	ENSMUSG00000045777	Ifitm10	6330512M04Rik|AI848576|DSPA3	interferon induced transmembrane protein 10	protein-coding	4.93026716336627	5.1715040901889	5.71200492631872	4.77096173267126	5.26659758831407	4.07701890465071	5.013001152813	5.48750662933514	-0.148977572022713	0.685106127775749	0.996533206832645
Merged-chr19-6015422-6	chr19	6015410	6015610	+	787.896851	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007600)	promoter-TSS (NM_007600)	-263.0	NM_007600	12333.0	Mm.6221	NM_007600	ENSMUSG00000024942	Capn1	Capa-1|Capa1|mu-calpin	calpain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-145807443-2	chr2	145807343	145807543	+	841.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028724, intron 2 of 12)	intron (NM_028724, intron 2 of 12)	21327.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-118246170-3	chr5	118246083	118246283	+	610.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081236, intron 1 of 4)	intron (NM_001081236, intron 1 of 4)	956.0	NM_001081236	76792.0	Mm.103428	NM_001081236	ENSMUSG00000032840	2410131K14Rik	-	RIKEN cDNA 2410131K14 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-125409037-4	chr5	125408933	125409133	+	987.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	tRNA-Asp-GAY|tRNA|tRNA	-19016.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-150868882-1	chr2	150868782	150868982	+	558.0	f0_balb.idr	intron (NR_151505, intron 1 of 12)	L1M4|LINE|L1	-26312.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-114282212-2	chr6	114282112	114282312	+	571.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178703)	promoter-TSS (NM_178703)	-423.0	NM_178703	232333.0	Mm.5260	NM_178703	ENSMUSG00000030310	Slc6a1	A730043E01|GABATHG|GABATR|GAT-1|Gabt|Gabt1|Gat1|XT-1|Xtrp1	solute carrier family 6 (neurotransmitter transporter, GABA), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-35387130-4	chr8	35387030	35387230	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177741, exon 2 of 2)	3' UTR (NM_177741, exon 2 of 2)	11389.0	NM_177741	244416.0	Mm.247126	NM_177741	ENSMUSG00000046794	Ppp1r3b	6430576E21|AW821953|GL|PTG	protein phosphatase 1, regulatory (inhibitor) subunit 3B	protein-coding	4.56564810609681	4.16140242023027	3.55831885651438	3.78135050307774	4.17932019257298	4.12215059158978	4.29660870590392	3.93753808587913	0.0771261607873864	0.863118792015159	0.998431161219273
Merged-chr3-88149198-4	chr3	88149105	88149305	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310593, intron 1 of 10)	intron (NM_001310593, intron 1 of 10)	6833.0	NM_133665	17261.0	Mm.28184	NM_133665	ENSMUSG00000001419	Mef2d	C80750	myocyte enhancer factor 2D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-127266216-4	chr6	127266122	127266322	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41745.0	NR_073373	232386.0	Mm.257367	NR_073373	ENSMUSG00000107153	Gm38404	D130058E03	predicted gene, 38404	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123245670-3	chr5	123245563	123245763	+	806.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026000, intron 4 of 5)	intron (NM_026000, intron 4 of 5)	17473.0	NM_026000	67151.0	Mm.278997	NM_026000	ENSMUSG00000029440	Psmd9	1500011J20Rik|2610202L11Rik|Bridge-1|P27	proteasome (prosome, macropain) 26S subunit, non-ATPase, 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-37544182-3	chr19	37544081	37544281	+	747.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6237.0	NM_175353	107371.0	Mm.24865	NM_175353	ENSMUSG00000053799	Exoc6	4833405E05Rik|AW413330|C430002C19|Sec15|Sec15l1|hbd|msec15	exocyst complex component 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-120478266-4	chr14	120478169	120478369	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029519)	promoter-TSS (NM_029519)	-192.0	NM_029519	76108.0	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70747076-2	chr8	70746976	70747176	+	618.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_201607, intron 9 of 16)	intron (NM_201607, intron 9 of 16)	-7603.0	NM_001328047	19339.0	Mm.5083	NM_009001	ENSMUSG00000031840	Rab3a	-	RAB3A, member RAS oncogene family	protein-coding	1.25203435918261	0.842142811066705	1.61213835261384	0.816066834057123	1.5768471088243	0.845404891564283	1.37742911697706	1.91832909626534	1.14681734310063	0.411320255108983	0.894457543643833
Merged-chr9-44144059-2	chr9	44143959	44144159	+	865.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9401.0	NM_001359530	84004.0	Mm.275003	NM_023061	ENSMUSG00000032135	Mcam	1-gicerin|AV025631|CD146|CD149|Muc18|s-endo|s-gicerin	melanoma cell adhesion molecule	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122715949-2	chr5	122715851	122716051	+	640.75	f0_balb.idr|f1_c57bl6.idr	intron (NM_001310718, intron 2 of 10)	intron (NM_001310718, intron 2 of 10)	8407.0	NM_001310718	18438.0	Mm.290884	NM_011026	ENSMUSG00000029470	P2rx4	AI504491|AW555605|D5Ertd444e|P2X4	purinergic receptor P2X, ligand-gated ion channel 4	protein-coding	-0.734697168562934	-1.28094420828655	-1.29131886204401	-1.29984091153697	-1.31008363841169	-1.2786959775384	-1.28897026783925	-1.29831546875223	-2.42902550944018	0.482518537989684	1
Merged-chr4-32593122-2	chr4	32593022	32593222	+	738.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	9260.0	NM_010289	14610.0	Mm.377084	NM_010289	ENSMUSG00000051056	Gja10	Cx-57|Cx59|cx57	gap junction protein, alpha 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-4940354-4	chr7	4940264	4940464	+	951.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173008, intron 12 of 13)	intron (NM_173008, intron 12 of 13)	14520.0	NM_173008	269855.0	Mm.44190	NM_173008	ENSMUSG00000035279	Ssc5d	A430110N23Rik|S5D-SRCRB	scavenger receptor cysteine rich family, 5 domains	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-52525730-2	chr12	52525630	52525830	+	554.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009706, intron 1 of 5)	intron (NM_009706, intron 1 of 5)	9653.0	NM_009706	11855.0	Mm.35059	NM_009706	ENSMUSG00000035133	Arhgap5	p190-B|p190B	Rho GTPase activating protein 5	protein-coding	-0.10129403594322	0.888449436571122	-0.0841680231382033	-0.0905353608562804	-0.0996781901533225	0.903496030457706	-0.0823628092250997	-0.0894170162904303	0.0395142251790123	0.986378381761409	1
Merged-chr6-71632286-3	chr6	71632186	71632386	+	954.2666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362200, intron 1 of 25)	CpG	400.0	NM_173001	104263.0	Mm.260479	NM_173001	ENSMUSG00000053470	Kdm3a	1700105C21Rik|C230043E16Rik|JHDM2a|Jmjd1|Jmjd1a|KDM2A|TGSA|Tsga	lysine (K)-specific demethylase 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-83513119-3	chr17	83512903	83513103	+	631.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009187, intron 1 of 2)	intron (NM_009187, intron 1 of 2)	1330.0	NM_009187	20463.0	Mm.30072	NM_009187	ENSMUSG00000024248	Cox7a2l	COX7AR|COX7RP|EB1|SIG-81|SIG81|Silg81	cytochrome c oxidase subunit VIIa polypeptide 2-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-120832452-2	chr14	120832348	120832548	+	899.0	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-78746.0	NM_023579	70572.0	Mm.221452	NM_023579	ENSMUSG00000030662	Ipo5	1110011C18Rik|5730478E03Rik|AA409333|C76941|IMB3|Kpnb3|Ranbp5|imp5	importin 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-105415684-4	chr5	105415601	105415801	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033550)	promoter-TSS (NM_001033550)	-74.0	NM_001033550	433926.0	Mm.439781	NM_001033550	ENSMUSG00000070639	Lrrc8b	2210408K08Rik|R75581|Ta-lrrp|mKIAA0231	leucine rich repeat containing 8 family, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-58649282-2	chr15	58649182	58649382	+	566.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	174145.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-139388900-4	chr7	139388828	139389028	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001127363)	promoter-TSS (NM_001127363)	-181.0	NM_183144	212111.0	Mm.28308	NM_183144	ENSMUSG00000025477	Inpp5a	-	inositol polyphosphate-5-phosphatase A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-79820922-2	chr7	79820822	79821022	+	545.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_008486)	TTS (NM_008486)	10195.0	NM_008589	17293.0	Mm.31472	NM_008589	ENSMUSG00000030543	Mesp2	bHLHc6	mesoderm posterior 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-62846636-2	chr11	62846536	62846736	+	826.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291441)	promoter-TSS (NM_001291441)	-487.0	NM_001033669	213980.0	Mm.482259	NM_001033669	ENSMUSG00000090173	Fbxw10	Fbw10|HREP|SM25H2|SM2SH2	F-box and WD-40 domain protein 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-112514749-3	chr7	112514674	112514874	+	775.844421	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020606, intron 1 of 12)	intron (NM_020606, intron 1 of 12)	20909.0	NR_154466	102636183.0	Mm.446701	NR_154466		Parvaos	A230071N21Rik	parvin, alpha, opposite strand	ncRNA	2.21282048653369	3.70837805958418	3.42845192373833	1.69357958299328	2.80359489217557	1.26040212966034	1.76941121137328	1.1689518139154	-2.0088849924921	0.0429260021213342	0.296902098454132
Merged-chr2-25366178-3	chr2	25366069	25366269	+	848.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033293)	promoter-TSS (NM_001033293)	-506.0	NM_001033293	227620.0	Mm.33797	NM_001033293	ENSMUSG00000026956	Uap1l1	5730445F03Rik	UDP-N-acteylglucosamine pyrophosphorylase 1-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-118064144-2	chr3	118064044	118064244	+	965.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-195208.0	NM_029655	76561.0	Mm.33824	NM_029655	ENSMUSG00000028007	Snx7	2510028H01Rik	sorting nexin 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-54947438-2	chr6	54947338	54947538	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001171007, intron 3 of 11)	ID4_|SINE|ID	24223.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67598779-4	chr10	67598657	67598857	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26798.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-73090371-4	chr15	73090288	73090488	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053068)	promoter-TSS (NM_053068)	-24.0	NM_053068	93696.0	Mm.23095	NM_053068	ENSMUSG00000068391	Chrac1	2410152E03Rik|2810406L04Rik|YCL1	chromatin accessibility complex 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-43919363-2	chr7	43919263	43919463	+	681.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14408.0	NM_174865	317652.0	Mm.389896	NM_174865	ENSMUSG00000055193	Klk15	-	kallikrein related-peptidase 15	protein-coding	1.69383370124025	1.78782997987819	1.72489703084684	1.78926577250369	1.48056695890715	1.05463255654217	2.15477623251738	1.01927367997206	-0.670120770333706	0.572961915731684	0.964421585991687
Merged-chr6-31082812-2	chr6	31082712	31082912	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19719.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-128687141-2	chr8	128687041	128687241	+	791.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010578, intron 1 of 15)	intron (NM_010578, intron 1 of 15)	1487.0	NM_010578	16412.0	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-119950410-3	chr4	119950305	119950505	+	680.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010657, intron 1 of 8)	intron (NM_010657, intron 1 of 8)	135727.0	NM_010657	16656.0	Mm.302758	NM_010657	ENSMUSG00000028634	Hivep3	2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3	human immunodeficiency virus type I enhancer binding protein 3	protein-coding	-1.70082506844419	-1.8128995846731	-1.68002230136195	-1.82932535875574	-1.84062705049589	-1.81094533213152	-1.81987615827112	-1.82799938256687	-1.35620376503822	0.700603325690936	1
Merged-chr9-63731605-4	chr9	63731495	63731695	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016769, intron 1 of 8)	intron (NM_016769, intron 1 of 8)	26399.0	NM_016769	17127.0	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-145870398-1	chr2	145870298	145870498	+	799.25	f0_balb.idr	intron (NM_028724, intron 9 of 12)	intron (NM_028724, intron 9 of 12)	-32843.0	NM_026425	67877.0	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	1.57679679857907	2.22354182476565	1.2517714484651	2.47742986875402	1.58870430466468	2.36200001624439	2.48314726003945	2.20917274928327	0.538734971907866	0.5888570848638	0.968770342352041
Merged-chr16-31944786-2	chr16	31944686	31944886	+	969.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_172822, exon 3 of 3)	exon (NM_172822, exon 3 of 3)	3735.0	NR_027897	106264.0	Mm.347369	NM_025320	ENSMUSG00000107002	0610012G03Rik	AI839730	RIKEN cDNA 0610012G03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-40341572-2	chr12	40341472	40341672	+	575.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178845, intron 4 of 11)	intron (NM_178845, intron 4 of 11)	104218.0	NM_172575	246196.0	Mm.26852	NM_172575	ENSMUSG00000055917	Zfp277	2410017E24Rik|NIRF4	zinc finger protein 277	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118602307-2	chr9	118602207	118602407	+	572.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-4402.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-32249127-4	chr4	32249039	32249239	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-168296.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	4.89399994226021	4.62824700362558	3.57916321643766	5.42349719404877	5.22793826947719	4.12292597127243	5.18945565629238	5.47067275175551	0.368364993930396	0.386689068704549	0.876478988598962
Merged-chr10-117710763-4	chr10	117710661	117710861	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001288586)	promoter-TSS (NM_001288586)	-3.0	NM_001288586	17246.0	Mm.22670	NM_010786	ENSMUSG00000020184	Mdm2	1700007J15Rik|AA415488|Mdm-2	transformed mouse 3T3 cell double minute 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-125520890-2	chr5	125520790	125520990	+	573.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11528.0	NM_001190352	208151.0	Mm.40397	NM_001190352	ENSMUSG00000070498	Tmem132b	AK220418|mKIAA1786	transmembrane protein 132B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99233276-2	chr15	99233176	99233376	+	865.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_010601, exon 9 of 15)	exon (NM_010601, exon 9 of 15)	8300.0	NM_010601	16512.0	Mm.374793	NM_010601	ENSMUSG00000037579	Kcnh3	AU019351|C030044P22Rik|Elk2|Kv12.2|Melk2	potassium voltage-gated channel, subfamily H (eag-related), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-7661771-2	chr6	7661671	7661871	+	645.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	31411.0	NM_012055	27053.0	Mm.2942	NM_012055	ENSMUSG00000029752	Asns	-	asparagine synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70451386-2	chr11	70451286	70451486	+	666.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025397)	promoter-TSS (NM_025397)	-545.0	NM_025397	66172.0	Mm.46424	NM_025397	ENSMUSG00000018923	Med11	1110030J09Rik|AI465144|AW545069	mediator complex subunit 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-54701521-4	chr14	54701418	54701618	+	700.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10656.0	NM_207131	110794.0	Mm.236223	NM_207131	ENSMUSG00000052435	Cebpe	C/EBPe|C/EBPepsilon|CRP1|Gm294	CCAAT/enhancer binding protein (C/EBP), epsilon	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46969480-2	chr8	46969380	46969580	+	714.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17407.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-21078115-3	chr14	21078023	21078223	+	735.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001243041, intron 1 of 10)	intron (NM_001243041, intron 1 of 10)	1971.0	NM_001243041	11534.0	Mm.188734	NM_134079	ENSMUSG00000039197	Adk	2310026J05Rik|5033405D03Rik|AI255373|AI987814|Ak	adenosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119057020-4	chr11	119056858	119057058	+	960.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16045.0	NM_013926	30951.0	Mm.99953	NM_013926	ENSMUSG00000025578	Cbx8	Pc3	chromobox 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-148698841-4	chr2	148698750	148698950	+	850.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019632, intron 9 of 10)	intron (NM_019632, intron 9 of 10)	17730.0	NM_028986	74533.0	Mm.136913	NM_028986	ENSMUSG00000027439	Gzf1	8430437G08Rik|Zfp336|mGZF1	GDNF-inducible zinc finger protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24518512-1	chr17	24518412	24518612	+	918.0	f1_c57bl6.idr	intron (NM_153792, intron 3 of 20)	intron (NM_153792, intron 3 of 20)	9426.0	NM_153792	224619.0	Mm.275150	NM_153792	ENSMUSG00000052752	Traf7	RFWD1	TNF receptor-associated factor 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-127078052-2	chr4	127077952	127078152	+	789.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_104366, exon 1 of 16)	non-coding (NR_104366, exon 1 of 16)	669.0	NM_001285887	100177.0	Mm.276096	NM_177462	ENSMUSG00000042408	Zmym6	9330177P20Rik|AI593204|AI661340|D4Wsu24e|Zfp258	zinc finger, MYM-type 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-96365606-4	chr9	96365517	96365717	+	966.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1186.0	NM_001357212	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	1.58425486570429	0.862850536964498	1.23699545124875	1.93084014565103	1.50513206766807	0.866183469559031	1.64955863757823	0.838256002497103	-0.698313881946056	0.616306537516796	0.977352076822579
Merged-chr11-52100666-2	chr11	52100573	52100773	+	697.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_019411, intron 1 of 6)	intron (NM_019411, intron 1 of 6)	1849.0	NM_019411	19052.0	Mm.260288	NM_019411	ENSMUSG00000020349	Ppp2ca	PP2A|R75353	protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-77421267-4	chr8	77421157	77421357	+	995.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030113, intron 5 of 22)	intron (NM_030113, intron 5 of 22)	-95799.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-23198504-2	chr8	23198404	23198604	+	678.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_018743, intron 1 of 12)	intron (NM_018743, intron 1 of 12)	9949.0	NM_018743	102247.0	Mm.200898	NM_018743	ENSMUSG00000031545	Gpat4	AU041707|AW545732|Agpat6|Tsarg7	glycerol-3-phosphate acyltransferase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-118799739-1	chr7	118799639	118799839	+	682.0	f1_balb.idr	intron (NM_027815, intron 19 of 30)	intron (NM_027815, intron 19 of 30)	55874.0	NM_001168220	66356.0	Mm.482278	NM_023197	ENSMUSG00000030980	Knop1	2310008H09Rik|Tsg118	lysine rich nucleolar protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-149296229-1	chr4	149296129	149296329	+	568.0	f1_c57bl6.idr	intron (NM_008441, intron 1 of 20)	MTA_Mm|LTR|ERVL-MaLR	11469.0	NM_207682	16561.0	Mm.402393	NM_008441	ENSMUSG00000063077	Kif1b	A530096N05Rik|AI448212|AI506502|D4Mil1e|KIF1Bp130|KIF1Bp204	kinesin family member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-69213124-4	chr10	69213027	69213227	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001331193)	promoter-TSS (NM_001331193)	-29.0	NM_001331193	320700.0	Mm.396529	NM_001331193	ENSMUSG00000090622	A930033H14Rik	-	RIKEN cDNA A930033H14 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-94879934-3	chr3	94879842	94880042	+	997.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172683, exon 19 of 19)	exon (NM_172683, exon 19 of 19)	7016.0	NM_008945	19172.0	Mm.368	NM_008945	ENSMUSG00000005779	Psmb4	Pros-27	proteasome (prosome, macropain) subunit, beta type 4	protein-coding	0.5486764296431	0.428748872626883	0.596419519184166	0.416135620981596	0.787814496243723	0.924633192799478	0.751565650983891	1.04683566374057	2.76595417274127	0.105063632132902	1
Merged-chr1-153486347-2	chr1	153486247	153486447	+	901.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007842, intron 1 of 27)	B1_Mus2|SINE|Alu	1313.0	NM_007842	13211.0	Mm.20000	NM_007842	ENSMUSG00000042699	Dhx9	AI326842|Ddx9|HEL-5|NDHII|RHA|mHEL-5	DEAH (Asp-Glu-Ala-His) box polypeptide 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-79890338-2	chr11	79890238	79890438	+	664.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	72049.0	NM_144826	216987.0	Mm.274961	NM_144826	ENSMUSG00000035575	Utp6	4732497O03Rik|HCA66	UTP6 small subunit processome component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-31632720-1	chr15	31632620	31632820	+	619.0	f0_balb.idr	Intergenic	LTR50|LTR|ERVL	30604.0	NM_001356313	68073.0	Mm.119185	NM_026546	ENSMUSG00000039065	Fam173b	A930016P21Rik|AA987072	family with sequence similarity 173, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-70986967-4	chr2	70986865	70987065	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145524, intron 3 of 9)	(CA)n|Simple_repeat|Simple_repeat	31409.0	NM_001110512	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-96980253-4	chr5	96980147	96980347	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17442.0	NM_080708	140780.0	Mm.281490	NM_080708	ENSMUSG00000034663	Bmp2k	4933417M22Rik|AA673486|AV128808|BIKE	BMP2 inducible kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-95708350-4	chr16	95708245	95708445	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011809, intron 2 of 9)	intron (NM_011809, intron 2 of 9)	5938.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-72968572-4	chr9	72968403	72968603	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163725, intron 4 of 6)	intron (NM_001163725, intron 4 of 6)	9718.0	NM_001163725	67685.0	Mm.31817	NM_026314	ENSMUSG00000092192	Dyx1c1	1700010I24Rik|Dnaaf4|EKN1|b2b811.1Clo|b2b811Clo	dyslexia susceptibility 1 candidate 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-65587325-3	chr18	65587107	65587307	+	835.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361051, intron 1 of 8)	intron (NM_001361051, intron 1 of 8)	4006.0	NM_001361051	328977.0	Mm.286232	NM_207255	ENSMUSG00000042439	Zfp532	C530030I18Rik|Znf532|mKIAA1629	zinc finger protein 532	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-106335437-2	chr8	106335337	106335537	+	930.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_126090, exon 4 of 4)	non-coding (NR_126090, exon 4 of 4)	2551.0	NM_021491	58994.0	Mm.23298	NM_021491	ENSMUSG00000031906	Smpd3	4631433G07Rik|AI427456|AW537966|fro|nSMase2	sphingomyelin phosphodiesterase 3, neutral	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-37872702-2	chr1	37872602	37872802	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037918, intron 1 of 1)	intron (NM_001037918, intron 1 of 1)	496.0	NM_001037918	623661.0	Mm.138000	NM_001037918	ENSMUSG00000037216	Lipt1	EG623661	lipoyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98348668-2	chr11	98348568	98348768	+	687.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_144828, exon 1 of 7)	5' UTR (NM_144828, exon 1 of 7)	262.0	NM_144828	19049.0	Mm.45372	NM_144828	ENSMUSG00000061718	Ppp1r1b	AU040756|DARPP-32|Darpp32	protein phosphatase 1, regulatory (inhibitor) subunit 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-3114645-1	chr17	3114545	3114745	+	1000.0	f0_c57.idr	promoter-TSS (NM_134123)	promoter-TSS (NM_134123)	-327.0	NM_134123	106583.0	Mm.124373	NM_134123	ENSMUSG00000046201	Scaf8	A630086M08Rik|A930036P18Rik|AA408306|AI447644|AI448652|AU015035|Rbm16|mKIAA1116	SR-related CTD-associated factor 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-8196490-3	chr10	8196395	8196595	+	859.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-240372.0	NM_138667	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-48924967-4	chr2	48924876	48925076	+	990.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149356, intron 8 of 13)	intron (NR_149356, intron 8 of 13)	24291.0	NM_001177313	26428.0	Mm.291059	NM_011958	ENSMUSG00000026761	Orc4	Orc4P|Orc4l|mMmORC4	origin recognition complex, subunit 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3615707-1	chr19	3615607	3615807	+	797.0	f1_c57bl6.idr	exon (NM_008513, exon 10 of 23)	exon (NM_008513, exon 10 of 23)	-39958.0	NM_028999	52036.0	Mm.284686	NM_028999	ENSMUSG00000024908	Ppp6r3	4930528G08Rik|9130026N02Rik|D19Bwg1430e|D19Ertd703e|Pp6r3|Ppcs3|Pptcs3|Sapl|Saps3|mKIAA1558	protein phosphatase 6, regulatory subunit 3	protein-coding	0.657397349868166	1.59071017030155	0.34979452435786	0.981944461709243	0.328972407672387	0.794815935227191	0.352212705164459	0.342757333712671	-2.91310035811066	0.111200781903072	0.521710237724084
Merged-chr17-25015951-4	chr17	25015849	25016049	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020608)	promoter-TSS (NM_020608)	-137.0	NM_134126	106633.0	Mm.32802	NM_134126	ENSMUSG00000024169	Ift140	AI661311|Tce5|Wdtc2|mKIAA0590	intraflagellar transport 140	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80095577-2	chr10	80095477	80095677	+	606.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359637, intron 1 of 3)	intron (NM_001359637, intron 1 of 3)	5610.0	NM_001359635	216161.0	Mm.262102	NM_183426	ENSMUSG00000035673	Sbno2	BC019206|F730040C21|Sno|Stno	strawberry notch 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-164943687-1	chr2	164943587	164943787	+	566.0	f1_c57bl6.idr	Intergenic	MT2B|LTR|ERVL	-4532.0	NM_013599	17395.0	Mm.4406	NM_013599	ENSMUSG00000017737	Mmp9	AW743869|B/MMP9|Clg4b|Gel B|MMP-9|pro-MMP-9	matrix metallopeptidase 9	protein-coding	0.925001464921656	1.62578797221069	0.778556018905983	1.50864312719773	0.931256187286527	1.64020242375427	0.781709227799834	1.51782616202377	0.0350832746168828	0.9798751095932	0.998431161219273
Merged-chr11-44519168-9	chr11	44519198	44519398	+	990.2222289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166553)	promoter-TSS (NM_001166553)	-79.0	NM_001166553	74315.0	Mm.156771	NM_028862	ENSMUSG00000019189	Rnf145	3732413I11Rik|TMRF1	ring finger protein 145	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-103477404-4	chr14	103477307	103477507	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(A)n|Simple_repeat|Simple_repeat	-35934.0	NM_022886	64929.0	Mm.244003	NM_022886	ENSMUSG00000022123	Scel	9230114I02Rik	sciellin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-18845529-2	chr8	18845429	18845629	+	595.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026792)	promoter-TSS (NM_026792)	-750.0	NM_026792	52123.0	Mm.24117	NM_026792	ENSMUSG00000031467	Agpat5	1110013A05Rik|D8Ertd319e	1-acylglycerol-3-phosphate O-acyltransferase 5 (lysophosphatidic acid acyltransferase, epsilon)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-103032646-2	chr11	103032546	103032746	+	648.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008707, intron 1 of 11)	RSINE1|SINE|B4	4103.0	NM_008707	18107.0	Mm.10265	NM_008707	ENSMUSG00000020936	Nmt1	AW536594	N-myristoyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-41407573-3	chr4	41407492	41407692	+	700.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024241, intron 6 of 12)	ORR1E|LTR|ERVL-MaLR	55629.0	NM_001355508	67123.0	Mm.289795	NM_023305	ENSMUSG00000028437	Ubap1	2700092A01Rik|NAG20|UBAP-1|Ubap	ubiquitin-associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-35929966-3	chr3	35929844	35930044	+	817.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205361, intron 1 of 6)	intron (NM_001205361, intron 1 of 6)	130.0	NM_033623	114893.0	Mm.374810	NM_033623	ENSMUSG00000027708	Dcun1d1	Rp42|SCCRO|Tes3|pTes3	DCN1, defective in cullin neddylation 1, domain containing 1 (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-54954828-3	chr6	54954737	54954937	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172729, intron 1 of 11)	intron (NM_172729, intron 1 of 11)	16824.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-21694215-4	chr16	21694117	21694317	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001001881, exon 1 of 2)	exon (NM_001001881, exon 1 of 2)	448.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-10431101-2	chr17	10431001	10431201	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027032, intron 4 of 4)	intron (NM_027032, intron 4 of 4)	-25115.0	NR_077239	319750.0	Mm.383485	NR_077237	ENSMUSG00000089633	A230009B12Rik	-	RIKEN cDNA A230009B12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-73433773-4	chr13	73433676	73433876	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33607.0	NM_145376	210992.0	Mm.284649	NM_145376	ENSMUSG00000021608	Lpcat1	2900035H07Rik|Aytl2|BB137372|BC005662|C87117|LPCAT|rd11	lysophosphatidylcholine acyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-145929756-4	chr3	145929679	145929879	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009740, intron 1 of 2)	intron (NM_009740, intron 1 of 2)	5517.0	NM_009740	12042.0	Mm.239141	NM_009740	ENSMUSG00000028191	Bcl10	AI132454|BCL-10|C81403|CARMEN|CIPER|CLAP|ME10|cE10	B cell leukemia/lymphoma 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120792871-4	chr8	120792775	120792975	+	975.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54236.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101845341-3	chr7	101845243	101845443	+	790.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001303231)	promoter-TSS (NM_001303231)	-12.0	NM_008035	14276.0	Mm.439666	NM_008035	ENSMUSG00000032725	Folr2	FBP2|FR-P3|FR-beta|Folbp-2|Folbp2	folate receptor 2 (fetal)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-137373896-4	chr4	137373797	137373997	+	967.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16138.0	NM_001243769	12540.0	Mm.1022	NM_009861	ENSMUSG00000006699	Cdc42	AI747189|AU018915	cell division cycle 42	protein-coding	2.92793541449817	2.05487974057764	3.17293322671341	3.4553409441224	2.62634123050031	2.5894747974167	1.49838503158928	2.65948150167257	-1.09667577580128	0.171650077697724	0.639318387484673
Merged-chr7-125473979-1	chr7	125473879	125474079	+	989.0	f1_c57bl6.idr	intron (NM_001360659, intron 2 of 7)	intron (NM_001360659, intron 2 of 7)	17563.0	NM_001360659	67711.0	Mm.4467	NM_026330	ENSMUSG00000030750	Nsmce1	2510027N19Rik	NSE1 homolog, SMC5-SMC6 complex component	protein-coding	1.52235166680854	2.80994642883987	1.26471261085656	2.68748421227078	1.53688381763856	1.91982649955096	0.999072519304447	0.972333988764199	-2.15617670727775	0.0619163309923168	0.369588128978018
Merged-chr15-91169123-3	chr15	91168997	91169197	+	899.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011994, intron 6 of 9)	Lx|LINE|L1	22910.0	NM_011994	26874.0	Mm.295456	NM_011994	ENSMUSG00000055782	Abcd2	ABC39|ALDL1|ALDR|ALDRP	ATP-binding cassette, sub-family D (ALD), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-55437289-4	chr12	55437199	55437399	+	888.6166380000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38474.0	NM_011968	26443.0	Mm.30210	NM_011968	ENSMUSG00000021024	Psma6	IOTA	proteasome (prosome, macropain) subunit, alpha type 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-149267692-4	chr5	149267616	149267816	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009663, intron 1 of 4)	intron (NM_009663, intron 1 of 4)	2712.0	NM_009663	11690.0	Mm.19844	NM_009663	ENSMUSG00000060063	Alox5ap	Flap	arachidonate 5-lipoxygenase activating protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-58745026-6	chr1	58744940	58745140	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355056, intron 7 of 8)	intron (NM_001355056, intron 7 of 8)	14488.0	NM_001293805	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-71001568-2	chr12	71001468	71001668	+	877.900024	f1_balb.idr|f1_c57bl6.idr	intron (NR_045055, intron 3 of 3)	MTD|LTR|ERVL-MaLR	14255.0	NR_045056	73204.0	Mm.363770	NR_045055	ENSMUSG00000085622	3110056K07Rik	4921536K06Rik	RIKEN cDNA 3110056K07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-13536073-2	chr9	13535973	13536173	+	767.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-83916.0	NM_001013813	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-24360937-3	chr5	24360837	24361037	+	907.8444210000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3882.0	NM_008713	18127.0	Mm.258415	NM_008713	ENSMUSG00000028978	Nos3	2310065A03Rik|Nos-3|eNOS|ecNOS	nitric oxide synthase 3, endothelial cell	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-54694133-4	chr13	54694040	54694240	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027395)	promoter-TSS (NR_027395)	-180.0	NR_027396	105239.0	Mm.25366	NM_134064	ENSMUSG00000034928	Rnf44	AI854545|mKIAA1100	ring finger protein 44	protein-coding	4.91586016131944	4.71805427167076	5.04946027289	4.30042855829259	3.8891868655092	3.3292103541645	5.04959853342141	4.60939216158336	-0.497555396207413	0.257767504852729	0.757394577115846
Merged-chr2-166567594-2	chr2	166567494	166567694	+	814.666626	f1_balb.idr|f1_c57bl6.idr	TTS (NR_152154)	TTS (NR_152154)	3072.0	NR_152154	433503.0	Mm.491336	NR_152154		Gm29679	-	predicted gene, 29679	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96257346-2	chr3	96257246	96257446	+	619.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5971.0	NM_033596	97122.0	Mm.227295	NM_033596	ENSMUSG00000091405	Hist2h4	H4|X04652	histone cluster 2, H4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-96334185-2	chr10	96334085	96334285	+	959.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	107978.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80382598-2	chr10	80382498	80382698	+	669.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_198615, exon 2 of 2)	exon (NM_198615, exon 2 of 2)	5053.0	NM_198615	237400.0	Mm.268389	NM_198615	ENSMUSG00000048696	Mex3d	BC059858|Rkhd1	mex3 RNA binding family member D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-18840164-3	chr2	18840075	18840275	+	651.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA5A|LINE|L1	-38357.0	NR_131254	66774.0	Mm.87075	NR_131254	ENSMUSG00000097638	Carlr	4933439G12Rik|Carl	cardiac and apoptosis-related long non-coding RNA	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-72709387-2	chr14	72709287	72709487	+	999.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_207636, intron 1 of 25)	CpG	616.0	NM_207636	319448.0	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-87748111-2	chr11	87748011	87748211	+	812.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8753.0	NR_029555	387160.0		NR_029555	ENSMUSG00000105196	Mir142	Mirn142|miR-142|mir-142a|mmu-mir-142|mmu-mir-142a	microRNA 142	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-61774962-4	chr11	61774871	61775071	+	985.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_013881)	TTS (NM_013881)	-12883.0	NM_001164243	212627.0	Mm.27703	NM_144806	ENSMUSG00000020528	Prpsap2	A230054F23Rik	phosphoribosyl pyrophosphate synthetase-associated protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-50393478-4	chr17	50393376	50393576	+	989.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-99856.0	NM_001277863	13164.0	Mm.280641	NM_010021	ENSMUSG00000010592	Dazl	Daz-like|Dazh|Dazl1|Dazla|Tpx-2|Tpx2	deleted in azoospermia-like	protein-coding	3.434367631328	1.79260889152112	4.05251691454681	4.55382806647386	3.533207952735	2.58104911128375	3.75897902127976	4.50338897239086	-0.0315983382032507	0.97627621944058	0.998431161219273
Merged-chr2-156356265-3	chr2	156356167	156356367	+	945.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027585, intron 9 of 12)	intron (NM_027585, intron 9 of 12)	36712.0	NR_024329	347740.0	Mm.324242	NR_024329	ENSMUSG00000102869	2900097C17Rik	1810005K14Rik|4930563C06Rik	RIKEN cDNA 2900097C17 gene	ncRNA	1.55297136224273	1.58281997881956	1.27746798378656	1.56551086450039	0.726695801790194	0.768103170914535	0.754870367927614	1.10378836365513	-3.32211393868017	0.030070274106934	0.237357334694075
Merged-chr14-75833515-2	chr14	75833415	75833615	+	780.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C|LTR|ERVK	11449.0	NR_045294	100043189.0	Mm.426329	NR_045294		Gm4285	-	predicted gene 4285	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-69921611-2	chr8	69921511	69921711	+	949.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286450, intron 3 of 12)	intron (NM_001286450, intron 3 of 12)	-19053.0	NM_023312	67184.0	Mm.21162	NM_023312	ENSMUSG00000036199	Ndufa13	2700054G14Rik|AU022060|CDA016|CGI-39|GRIM-19|Grim19	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-65175190-2	chr3	65175090	65175290	+	557.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_126080, intron 3 of 4)	intron (NR_126080, intron 3 of 4)	-12913.0	NM_001289450	16497.0	Mm.316402	NM_010597	ENSMUSG00000027827	Kcnab1	Akr8a8|Kvbeta1.1|mKv(beta)1	potassium voltage-gated channel, shaker-related subfamily, beta member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-83861865-4	chr17	83861759	83861959	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-7441.0	NR_155491	320021.0	Mm.379475	NR_155490		C430042M11Rik	-	RIKEN cDNA C430042M11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-100660551-2	chr15	100660451	100660651	+	587.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001270537, intron 2 of 10)	intron (NM_001270537, intron 2 of 10)	8949.0	NM_001270537	668218.0	Mm.451225	NM_001270537	ENSMUSG00000098112	Bin2	-	bridging integrator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-173275720-5	chr2	173275551	173275751	+	873.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022995, intron 1 of 3)	intron (NM_022995, intron 1 of 3)	882.0	NM_022995	65112.0	Mm.73682	NM_022995	ENSMUSG00000038400	Pmepa1	2210418I02Rik|AW455466|Erg1.2|N4wbp4|Stag1|Tmepai	prostate transmembrane protein, androgen induced 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-77021644-2	chr10	77021544	77021744	+	895.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045882, exon 3 of 3)	non-coding (NR_045882, exon 3 of 3)	7931.0	NR_152191	100041099.0	Mm.426631	NR_152191		Gm3137	-	predicted gene, 3137	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-186677821-4	chr1	186677721	186677921	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009367, intron 1 of 6)	B4A|SINE|B4	28168.0	NM_009367	21808.0	Mm.18213	NM_009367	ENSMUSG00000039239	Tgfb2	BB105277|Tgf-beta2|Tgfb-2	transforming growth factor, beta 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-20804705-4	chr16	20804589	20804789	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70178.0	NM_009379	21832.0	Mm.3943	NM_009379	ENSMUSG00000022847	Thpo	Mgdf|Ml|Mpllg|Tpo	thrombopoietin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-83885227-4	chr12	83885131	83885331	+	942.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_073564, intron 1 of 12)	intron (NR_073564, intron 1 of 12)	-8419.0	NM_001272056	18222.0	Mm.4390	NM_010949	ENSMUSG00000021224	Numb	Nb	NUMB endocytic adaptor protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-118872305-2	chr10	118872205	118872405	+	618.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR33|LTR|ERVL	-3402.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-26888257-4	chr8	26888148	26888348	+	974.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-63825.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-113072860-2	chr12	113072760	113072960	+	770.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001291444, exon 24 of 24)	3' UTR (NM_001291444, exon 24 of 24)	-1642.0	NM_001361919	75671.0	Mm.23377	NM_029381	ENSMUSG00000012211	Tex22	1700028O09Rik|AV210422|Tep22	testis expressed gene 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-89680758-3	chr10	89680645	89680845	+	862.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198021, intron 1 of 17)	intron (NM_198021, intron 1 of 17)	5549.0	NM_001358843	213326.0	Mm.27651	NM_198021	ENSMUSG00000069539	Scyl2	AU015688|AW536445|BC030932|CVAK104|D10Ertd802e	SCY1-like 2 (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100122674-2	chr7	100122574	100122774	+	744.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-1174.0	NM_133692	67967.0	Mm.37562	NM_133692	ENSMUSG00000030726	Pold3	2410142G14Rik|C85233|P66|P68	polymerase (DNA-directed), delta 3, accessory subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70171285-2	chr14	70171185	70171385	+	905.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001253736, exon 6 of 10)	exon (NM_001253736, exon 6 of 10)	5530.0	NM_001253736	213019.0	Mm.283968	NM_145978	ENSMUSG00000022090	Pdlim2	4732462F18Rik|Slim	PDZ and LIM domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-150861897-2	chr2	150861797	150861997	+	994.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_151505, intron 1 of 12)	intron (NR_151505, intron 1 of 12)	-19327.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45339462-4	chr7	45339395	45339595	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010473)	TTS (NM_010473)	4226.0	NM_010473	15464.0	Mm.39968	NM_010473	ENSMUSG00000038239	Hrc	-	histidine rich calcium binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-71365212-3	chr10	71365111	71365311	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027184, intron 2 of 5)	intron (NM_027184, intron 2 of 5)	17448.0	NM_027184	69718.0	Mm.245867	NM_027184	ENSMUSG00000060733	Ipmk	2410017C19Rik|AA408208|Impk	inositol polyphosphate multikinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-40191566-2	chr10	40191466	40191666	+	783.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49312.0	NM_001114332	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-37431279-4	chr2	37431179	37431379	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146253)	promoter-TSS (NM_146253)	-360.0	NM_146253	241322.0	Mm.330182	NM_146253	ENSMUSG00000066798	Zbtb6	A830092L04Rik|ZID|Zfp482	zinc finger and BTB domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-84947588-1	chr15	84947488	84947688	+	562.0	f0_balb.idr	3' UTR (NM_001033273, exon 10 of 10)	3' UTR (NM_001033273, exon 10 of 10)	4035.0	NR_037206	100526461.0		NR_037206	ENSMUSG00000080441	Mir1249	mir-1249|mmu-mir-1249	microRNA 1249	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-37660270-4	chr13	37660163	37660363	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-165775.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	3.13131515831068	2.45950729484648	3.2245689140713	3.36672601137902	3.15665426246552	2.47785694282814	3.24915483143465	3.51555841257127	0.110608588638955	0.862811970552656	0.998431161219273
Merged-chr1-161361867-3	chr1	161361772	161361972	+	958.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33566.0	NM_009452	22164.0	Mm.4994	NM_009452	ENSMUSG00000026700	Tnfsf4	Ath-1|Ath1|CD134L|OX-40L|Ox40l|TXGP1|Tnlg2b|Txgp1l|gp34	tumor necrosis factor (ligand) superfamily, member 4	protein-coding	0.642006091363432	0.0788402094392531	0.0725677845005571	0.0677126798800207	0.459891715306703	0.0802510598032292	0.874135242529799	0.0685618804845492	1.12520371435319	0.604592305214952	1
Merged-chr4-116994465-4	chr4	116994363	116994563	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009478)	promoter-TSS (NM_009478)	-50.0	NM_009478	22275.0	Mm.46484	NM_009478	ENSMUSG00000028684	Urod	AI323803|UPD|Uro-d	uroporphyrinogen decarboxylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6295432-2	chr19	6295332	6295532	+	599.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010119, intron 3 of 4)	intron (NM_010119, intron 3 of 4)	-11025.0	NM_001033342	240505.0	Mm.329622	NM_001033342	ENSMUSG00000024769	Cdc42bpg	BC046418|MRCKgamma	CDC42 binding protein kinase gamma (DMPK-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-44632927-4	chr10	44632789	44632989	+	970.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-174141.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-34751264-3	chr19	34751166	34751366	+	917.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4155.0	NM_172838	240638.0	Mm.74636	NM_172838	ENSMUSG00000009378	Slc16a12	3230401A21|AW210596	solute carrier family 16 (monocarboxylic acid transporters), member 12	protein-coding	1.50072409059288	1.03002707495969	1.92530390960946	0.985041594399814	1.88223314341318	2.35400540193676	2.64495777269262	0.988562490821555	1.89527089254376	0.120231415732748	0.544353406023213
Merged-chr1-64299759-2	chr1	64299659	64299859	+	636.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-178370.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-25477955-2	chr9	25477855	25478055	+	753.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3642.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-82983343-1	chr8	82983243	82983443	+	609.0	f0_balb.idr	intron (NM_177378, intron 1 of 6)	intron (NM_177378, intron 1 of 6)	119987.0	NM_177378	330812.0	Mm.491438	NM_177378	ENSMUSG00000047747	Rnf150	A630007N06Rik|C030044C12Rik|Greul5|mKIAA1214	ring finger protein 150	protein-coding	0.0156577639328963	0.331085733802606	0.183570511776838	0.0393476478924688	-0.103830831513892	-0.0930156395515976	0.190062963475085	-0.0995879498025121	-1.77270810142699	0.405438211412328	1
Merged-chr19-4258252-2	chr19	4258152	4258352	+	789.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5626.0	NR_105951	102465595.0		NR_105951	ENSMUSG00000099290	Mir6985	Gm27719|mmu-mir-6985	microRNA 6985	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-77967884-2	chr10	77967784	77967984	+	821.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_138301, intron 2 of 33)	intron (NM_138301, intron 2 of 33)	1988.0	NM_138301	28240.0	Mm.276762	NM_138301	ENSMUSG00000009292	Trpm2	9830168K16Rik|C79133|LTRPC2|TRPC7|Trp7|Trrp7	transient receptor potential cation channel, subfamily M, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-75371134-3	chr7	75371027	75371227	+	938.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61865.0	NM_153579	64176.0	Mm.273082	NM_153579	ENSMUSG00000053025	Sv2b	A830038F04Rik|AI850768|mKIAA0735	synaptic vesicle glycoprotein 2 b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-90126875-4	chr9	90126777	90126977	+	966.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12057.0	NM_024431	21761.0	Mm.426209	NM_024431	ENSMUSG00000062270	Morf4l1	MORFRG15|MRG15|TEG-189|Tex189|mKIAA4002	mortality factor 4 like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-57344599-4	chr17	57344517	57344717	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14069.0	NM_001355723	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-26360984-4	chr2	26360906	26361106	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1459.0	NM_001037747	332579.0	Mm.330064	NM_001037747	ENSMUSG00000026928	Card9	Gm782	caspase recruitment domain family, member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89391975-4	chr3	89391893	89392093	+	984.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355211)	promoter-TSS (NM_001355211)	76.0	NM_001355211	22724.0	Mm.262184	NM_009565	ENSMUSG00000028042	Zbtb7b	Thpok|Zfp67|c-Krox	zinc finger and BTB domain containing 7B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-89007711-1	chr11	89007611	89007811	+	606.0	f1_c57bl6.idr	intron (NM_009546, intron 2 of 8)	intron (NM_009546, intron 2 of 8)	8308.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	1.01847657446437	1.30716631822336	0.511080956873442	0.503383003412433	1.02990330518751	1.3205781386575	0.513271090682099	0.504731991526003	0.040323094449747	0.981368665632359	0.998431161219273
Merged-chr3-15007131-1	chr3	15007031	15007231	+	541.0	f0_balb.idr	Intergenic	RLTR45|LTR|ERVK	35930.0	NR_040550	77127.0	Mm.195792	NR_040549	ENSMUSG00000098008	A930001A20Rik	-	RIKEN cDNA A930001A20 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-75886838-6	chr15	75886687	75886887	+	914.5166630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001282443, exon 5 of 14)	exon (NM_001282443, exon 5 of 14)	1936.0	NM_001282443	223645.0		NM_001282443	ENSMUSG00000098678	Mroh6	Gm19570	maestro heat-like repeat family member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-63708658-4	chr18	63708564	63708764	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360837)	promoter-TSS (NM_001360837)	-31.0	NM_001360837	104082.0	Mm.30850	NM_001014981	ENSMUSG00000040560	Wdr7	AI462727|TRAG|mKIAA0541	WD repeat domain 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-156716859-2	chr2	156716759	156716959	+	713.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_040505, intron 2 of 3)	intron (NR_040505, intron 2 of 3)	4050.0	NR_040505	74846.0	Mm.443946	NR_040505	ENSMUSG00000086638	4930405A21Rik	-	RIKEN cDNA 4930405A21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-189875839-3	chr1	189875738	189875938	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008976, exon 19 of 19)	3' UTR (NM_008976, exon 19 of 19)	46453.0	NM_026796	226830.0	Mm.156895	NM_026796	ENSMUSG00000026603	Smyd2	1110020E07Rik|4930402C15|KMT3C|Zmynd14	SET and MYND domain containing 2	protein-coding	1.38323616188527	1.05363933056391	1.02378313938505	0.999750222086564	2.63545769096761	2.53144502536708	1.86887044658992	2.51510963481383	4.33510885344486	0.000909296151562972	0.0179633401094169
Merged-chr8-94923631-3	chr8	94923530	94923730	+	824.022217	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145972)	promoter-TSS (NM_001145972)	-64.0	NM_001033468	382045.0	Mm.334726	NM_001033468	ENSMUSG00000061577	Adgrg5	Gm1109|Gpr114|PGR27	adhesion G protein-coupled receptor G5	protein-coding	2.31079005929021	2.59688853315099	1.69464733557714	3.03612299226357	2.43360336923254	2.61624831948176	1.70674285336705	3.05143063949841	0.0812280461651097	0.924233062290368	0.998431161219273
Merged-chr4-144908276-1	chr4	144908176	144908376	+	763.0	f0_balb.idr	intron (NM_001357274, intron 2 of 6)	L2a|LINE|L2	15139.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-58670351-4	chr16	58670231	58670431	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_007757, exon 1 of 7)	5' UTR (NM_007757, exon 1 of 7)	123.0	NM_007757	12892.0	Mm.291519	NM_007757	ENSMUSG00000022742	Cpox	CPX|Cpo|HCP|cac|nct	coproporphyrinogen oxidase	protein-coding	3.26774705385136	2.01690202879036	2.98026699970209	4.11744083925048	2.6340567576434	3.84105097745991	4.21118250956024	2.78267719097667	0.341460370621275	0.627302374409189	0.980912176761026
Merged-chr8-14837779-4	chr8	14837662	14837862	+	952.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172910, intron 13 of 15)	intron (NM_172910, intron 13 of 15)	-50774.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21261963-3	chr9	21261875	21262075	+	812.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger5|DNA|TcMar-Tigger	-3310.0	NM_153583	235040.0	Mm.440165	NM_153583	ENSMUSG00000002820	Atg4d	9830134P12Rik|APG4-D|Apg4d|Atg4dl|Autl4	autophagy related 4D, cysteine peptidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-72835764-2	chr17	72835664	72835864	+	997.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027166)	promoter-TSS (NM_027166)	-864.0	NM_027166	383295.0	Mm.277533	NM_027166	ENSMUSG00000039770	Ypel5	2310076K21Rik|CGI-127	yippee like 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-51645127-4	chr13	51645003	51645203	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025415)	promoter-TSS (NM_025415)	-129.0	NM_025415	66197.0	Mm.222228	NM_025415	ENSMUSG00000062248	Cks2	1110038L14Rik|CKSHS2	CDC28 protein kinase regulatory subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-52046226-4	chr3	52046126	52046326	+	987.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	58780.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-35215000-3	chr12	35214900	35215100	+	764.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20103.0	NR_030449	751520.0		NR_030449	ENSMUSG00000076253	Mir680-3	Mirn680-3	microRNA 680-3	ncRNA	-0.51191850434302	-0.638152523471906	-0.641280240538562	-0.353630095602985	-0.101818316506568	-0.637445490196532	-0.640591650911889	-0.643264181490143	0.608586174066935	0.82359252043286	1
Merged-chr5-139274298-2	chr5	139274198	139274398	+	624.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172723, intron 8 of 10)	intron (NM_172723, intron 8 of 10)	20801.0	NM_001163316	67604.0	Mm.270137	NM_026269	ENSMUSG00000025858	Get4	1110007L15Rik|AW412535|Cee	golgi to ER traffic protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-5009787-1	chr15	5009687	5009887	+	658.0	f0_balb.idr	intron (NM_001243837, intron 12 of 17)	intron (NM_001243837, intron 12 of 17)	53986.0	NM_001243837	109828.0	Mm.208034	NM_001243837	ENSMUSG00000079105	C7	A530026G17|Gm1238	complement component 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-78441056-6	chr10	78440936	78441136	+	853.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172134, intron 10 of 10)	intron (NM_172134, intron 10 of 10)	4121.0	NR_105873	102466762.0		NR_105873	ENSMUSG00000098279	Mir6908	Gm27827|mmu-mir-6908	microRNA 6908	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-21045087-2	chr19	21044987	21045187	+	876.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59623.0	NR_126458	75354.0	Mm.243873	NR_126458		4930554I06Rik	-	RIKEN cDNA 4930554I06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-112993431-1	chr5	112993331	112993531	+	600.5	f0_c57.idr	intron (NM_001285806, intron 1 of 20)	intron (NM_001285806, intron 1 of 20)	22107.0	NM_001285806	320129.0	Mm.285619	NM_177078	ENSMUSG00000042249	Grk3	4833444A01Rik|AI851927|AW551196|Adrbk-2|Adrbk2|Bark-2	G protein-coupled receptor kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-93163510-3	chr10	93163394	93163594	+	558.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_035452)	TTS (NR_035452)	709.0	NR_035452	100316689.0		NR_035452	ENSMUSG00000089214	Mir1931	mir-1931|mmu-mir-1931	microRNA 1931	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-33629802-1	chr8	33629702	33629902	+	680.0	f0_balb.idr	intron (NM_178648, intron 4 of 7)	intron (NM_178648, intron 4 of 7)	12174.0	NM_178648	108159.0	Mm.29301	NM_178648	ENSMUSG00000052906	Ubxn8	D0H8S2298E|Rep-8|Rep8h|Ubxd6	UBX domain protein 8	protein-coding	1.75903306404872	2.96840250021605	1.25386617324951	2.13992969273352	2.04244340359681	2.9149078233103	1.92776092040072	1.86659217228081	0.152152966157739	0.876476984801571	0.998431161219273
Merged-chr5-134998234-2	chr5	134998134	134998334	+	622.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_026907, intron 1 of 4)	(TG)n|Simple_repeat|Simple_repeat	3116.0	NR_026907	71304.0	Mm.482317	NR_026907	ENSMUSG00000054909	Wbscr25	4933433J03Rik|4933439O14Rik	Williams Beuren syndrome chromosome region 25 (human)	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-64738121-3	chr9	64738013	64738213	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017382)	promoter-TSS (NM_017382)	-357.0	NM_017382	53869.0	Mm.1387	NM_017382	ENSMUSG00000004771	Rab11a	-	RAB11A, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-43913423-4	chr1	43913322	43913522	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-20572.0	NM_001310540	22019.0	Mm.401675	NM_009418	ENSMUSG00000041763	Tpp2	TPP-2|TppII	tripeptidyl peptidase II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33531347-4	chr16	33531250	33531450	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083902, intron 1 of 11)	intron (NM_001083902, intron 1 of 11)	12755.0	NM_001083902	171286.0	Mm.35253	NM_134251	ENSMUSG00000035506	Slc12a8	CCC9|E330020C02Rik	solute carrier family 12 (potassium/chloride transporters), member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123458993-2	chr5	123458893	123459093	+	670.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23108.0	NM_029594	76399.0	Mm.75049	NM_029594	ENSMUSG00000029437	Il31	1700013B14Rik	interleukin 31	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-134350887-4	chr5	134350792	134350992	+	946.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24438.0	NR_039544	100628570.0		NR_039544	ENSMUSG00000093311	Mir3965	mmu-mir-3965|mu-mir-3965	microRNA 3965	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21616065-4	chr9	21615963	21616163	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011417)	promoter-TSS (NM_011417)	-106.0	NM_011417	20586.0	Mm.286593	NM_011417	ENSMUSG00000032187	Smarca4	BAF190A|Brg1|HP1-BP72|SNF2beta|SW1/SNF|b2b508.1Clo|b2b692Clo	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-10689181-4	chr12	10689077	10689277	+	829.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	242789.0	NR_110487	328061.0	Mm.56067	NR_110487	ENSMUSG00000112792	Gm38407	4931412M21	predicted gene, 38407	ncRNA	3.2870244498178	3.67210559514922	2.59507068054243	2.63286540227623	2.79207531978811	2.42190249121076	1.45562098653992	1.90698033496725	-1.66518530581761	0.039190390790519	0.282010980830456
Merged-chr19-10519051-1	chr19	10518951	10519151	+	590.0	f1_balb.idr	intron (NM_025333, intron 1 of 3)	L1_Mus3|LINE|L1	6158.0	NM_025333	66072.0	Mm.180063	NM_025333	ENSMUSG00000024668	Sdhaf2	0610038F07Rik|AA407634|AW049997	succinate dehydrogenase complex assembly factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-62470914-4	chr4	62470818	62471018	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290521)	promoter-TSS (NM_001290521)	-19.0	NM_001290521	71354.0	Mm.155573	NM_023597	ENSMUSG00000028391	Wdr31	5430402I10Rik|spWD	WD repeat domain 31	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-21517733-4	chr5	21517633	21517833	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199632, intron 17 of 20)	ORR1C1|LTR|ERVL-MaLR	-25794.0	NM_028977	74511.0	Mm.439963	NM_028977	ENSMUSG00000039883	Lrrc17	37kDa|4833425M04Rik|6130400C22Rik|P37nb	leucine rich repeat containing 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-39770448-2	chr15	39770348	39770548	+	841.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_022722, intron 9 of 9)	LTR16C|LTR|ERVL	24518.0	NM_001289508	75766.0	Mm.159563	NM_029422	ENSMUSG00000022303	Dcstamp	4833414I07Rik|DC-STAMP|FIND|Tm7sf4|mDC-STAMP	dendrocyte expressed seven transmembrane protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-84184512-2	chr15	84184412	84184612	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_054088, intron 7 of 7)	intron (NM_054088, intron 7 of 7)	-7721.0	NM_178614	68653.0	Mm.290725	NM_178614	ENSMUSG00000022437	Samm50	1110030L07Rik	SAMM50 sorting and assembly machinery component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-105800786-3	chr3	105800673	105800873	+	972.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145541, intron 1 of 7)	CpG	608.0	NM_145541	109905.0	Mm.101922	NM_145541	ENSMUSG00000068798	Rap1a	AI848598|G-22K|Krev-1|Rap1	RAS-related protein 1a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-4198905-4	chr12	4198787	4198987	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159537, intron 8 of 21)	intron (NM_001159537, intron 8 of 21)	35078.0	NM_134046	52504.0	Mm.70546	NM_134046	ENSMUSG00000020652	Cenpo	2810429O05Rik|8430427C03Rik|D12Ertd482e	centromere protein O	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-27315500-3	chr14	27315370	27315570	+	899.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027871, intron 2 of 10)	G-rich|Low_complexity|Low_complexity	-20567.0	NM_001289687	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70552262-2	chr14	70552162	70552362	+	549.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1794.0	NM_021877	15460.0	Mm.7598	NM_021877	ENSMUSG00000022096	Hr	ALUNC|AU|N|ba|bldy|hr|rh|rh-bmh|rhino	hairless	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-86796067-4	chr12	86795974	86796174	+	973.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61705.0	NM_001195767	627607.0	Mm.341880	NM_001195767	ENSMUSG00000059114	Lrrc74a	EG627607|Gm6772|Lrrc74	leucine rich repeat containing 74A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71360244-2	chr8	71360117	71360317	+	655.875	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001142323, exon 39 of 39)	3' UTR (NM_001142323, exon 39 of 39)	-6631.0	NM_001145780	67023.0	Mm.41890	NM_025917	ENSMUSG00000002395	Use1	2010315L10Rik|5730403H22Rik|AV002165|D12|Ed2|Q-snare|p31	unconventional SNARE in the ER 1 homolog (S. cerevisiae)	protein-coding	-1.84249666652287	-1.81280314203583	-1.821782708929	-1.8291587925341	-1.69912265473888	-1.81085723243092	-1.81974993181089	-1.68654889582706	1.42917657148143	0.685329973313288	1
Merged-chr13-37692552-3	chr13	37692449	37692649	+	940.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-133489.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-67961415-2	chr8	67961315	67961515	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177698, intron 2 of 14)	intron (NM_177698, intron 2 of 14)	13159.0	NM_177698	234353.0	Mm.32525	NM_027626	ENSMUSG00000030465	Psd3	4931420C21Rik|AI661273|BC003498|D430018P08|EFA6D	pleckstrin and Sec7 domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-16367168-2	chr14	16367079	16367279	+	589.5	f0_balb.idr|f1_c57bl6.idr	intron (NM_009409, intron 1 of 35)	B3|SINE|B2	1973.0	NM_009409	21974.0	Mm.130362	NM_009409	ENSMUSG00000017485	Top2b	D230016L12Rik|Top-2	topoisomerase (DNA) II beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-7395713-4	chr1	7395599	7395799	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	306779.0	NM_183028	319263.0	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-76128929-3	chr13	76128805	76129005	+	761.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081352, intron 17 of 43)	intron (NM_001081352, intron 17 of 43)	30171.0	NM_001081352	218343.0	Mm.277964	NM_001081352	ENSMUSG00000033991	Ttc37	-	tetratricopeptide repeat domain 37	protein-coding	0.159964918390489	0.191021967351854	0.181045657887332	0.173220210841108	0.161958523330847	1.36728114257235	0.999766693450523	0.555675817984113	4.55228744629196	0.0187203109685622	1
Merged-chr4-155993133-4	chr4	155993019	155993219	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302469)	promoter-TSS (NM_001302469)	-34.0	NM_001302469	20318.0	Mm.293517	NM_011341	ENSMUSG00000029076	Sdf4	Cab45	stromal cell derived factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-34078050-4	chr13	34077958	34078158	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009450)	promoter-TSS (NM_009450)	-50.0	NM_009450	22151.0	Mm.422827	NM_009450	ENSMUSG00000058672	Tubb2a	M(beta)2|Tubb2	tubulin, beta 2A class IIA	protein-coding	5.89339538179911	6.16721330221668	6.06123105086	5.71468145599133	5.91535451417476	5.59445142698695	6.11823789423724	5.90972036539686	-0.0721083856509263	0.762945885288481	0.998431161219273
Merged-chr12-99993232-2	chr12	99993132	99993332	+	935.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164426, intron 2 of 2)	intron (NM_001164426, intron 2 of 2)	28733.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-119432432-4	chr8	119432344	119432544	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4718.0	NM_027950	71839.0	Mm.272357	NM_027950	ENSMUSG00000074063	Osgin1	1700012B18Rik|Okl38	oxidative stress induced growth inhibitor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-116491260-4	chr7	116491166	116491366	+	968.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-13103.0	NM_001130479	53322.0	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-25029457-2	chr2	25029357	25029557	+	721.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146251, intron 20 of 34)	intron (NM_146251, intron 20 of 34)	-24922.0	NM_001177654	56876.0	Mm.42956	NM_020276	ENSMUSG00000006476	Nsmf	Jacob|Nelf	NMDA receptor synaptonuclear signaling and neuronal migration factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-115131470-4	chr7	115131358	115131558	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	180184.0	NR_040319	101786.0	Mm.395157	NR_040317	ENSMUSG00000108379	A730082K24Rik	AU044236	RIKEN cDNA A730082K24 gene	ncRNA	3.83631469288715	3.36652718422883	3.25103653947108	4.12756993487522	3.96417153250596	3.68502403205183	3.38049601718686	3.75409295328686	0.0211089049732128	0.967013807033291	0.998431161219273
Merged-chr1-37999339-4	chr1	37999229	37999429	+	772.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198303, intron 1 of 23)	intron (NM_198303, intron 1 of 23)	1319.0	NM_198303	226982.0	Mm.260943	NM_198303	ENSMUSG00000026083	Eif5b	A030003E17Rik|BC018347|IF2	eukaryotic translation initiation factor 5B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-31099022-2	chr7	31098922	31099122	+	729.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001276269, exon 13 of 13)	3' UTR (NM_001276269, exon 13 of 13)	11975.0	NM_001276269	15451.0	Mm.19182	NM_008281	ENSMUSG00000001249	Hpn	Hlb320	hepsin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-113837924-1	chr5	113837824	113838024	+	600.0	f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-7423.0	NM_009151	20345.0	Mm.332590	NM_009151	ENSMUSG00000048163	Selplg	CD162|Psgl-1|Psgl1|Selp1|Selpl	selectin, platelet (p-selectin) ligand	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-111059592-4	chr5	111059496	111059696	+	974.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001267622, intron 2 of 22)	intron (NM_001267622, intron 2 of 22)	55452.0	NR_030482	735278.0		NR_030482	ENSMUSG00000076163	Mir701	Mirn701|mir-701|mmu-mir-701	microRNA 701	ncRNA	3.70916879491872	3.7110011120977	3.09551103160093	3.00854829071455	3.05820989039659	3.22573115600474	2.89252824329474	3.02405566503596	-0.619587930140555	0.29310162680288	0.797649214211793
Merged-chr5-16553927-1	chr5	16553827	16554027	+	902.8333130000001	f0_balb.idr	promoter-TSS (NM_001289461)	promoter-TSS (NM_001289461)	26.0	NM_001289461	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27027522-4	chr2	27027398	27027598	+	923.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177627, intron 1 of 8)	intron (NM_001177627, intron 1 of 8)	500.0	NM_172659	227659.0	Mm.41203	NM_172659	ENSMUSG00000036067	Slc2a6	A330096C23|F630103L12Rik|Glut6|Glut9	solute carrier family 2 (facilitated glucose transporter), member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-28123378-2	chr13	28123278	28123478	+	723.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19106.0	NM_023746	28078.0	Mm.155058	NM_023746	ENSMUSG00000017064	Prl5a1	1600013P04Rik|D13Wsu14e|Ghd24|PLP-L|Prlpl	prolactin family 5, subfamily a, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-8536965-2	chr4	8536877	8537077	+	588.5	f0_c57.idr|f1_c57bl6.idr	intron (NM_021518, intron 1 of 7)	intron (NM_021518, intron 1 of 7)	1333.0	NM_021518	59021.0	Mm.397471	NM_021518	ENSMUSG00000047187	Rab2a	9330148M11Rik|C80220|Rab2	RAB2A, member RAS oncogene family	protein-coding	0.965149352322595	0.318523510358664	1.00760552860211	0.86176385724692	0.296867414245878	0.525978274267031	0.312657678013837	0.306178672278623	-3.50026602362596	0.0652382893311568	1
Merged-chr15-39769072-3	chr15	39768979	39769179	+	851.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_022722, exon 10 of 10)	3' UTR (NM_022722, exon 10 of 10)	23149.0	NM_001289508	75766.0	Mm.159563	NM_029422	ENSMUSG00000022303	Dcstamp	4833414I07Rik|DC-STAMP|FIND|Tm7sf4|mDC-STAMP	dendrocyte expressed seven transmembrane protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-181375375-2	chr2	181375275	181375475	+	841.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001048148, intron 1 of 5)	intron (NM_001048148, intron 1 of 5)	-5860.0	NM_023684	72699.0	Mm.440138	NM_023684	ENSMUSG00000090077	Lime1	2810038K19Rik|LIME	Lck interacting transmembrane adaptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-65497147-4	chr18	65497037	65497237	+	999.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_105742, intron 3 of 6)	intron (NR_105742, intron 3 of 6)	66140.0	NM_172833	240354.0	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	4.00675346732022	3.68204204909901	4.27368117868449	2.85966838932401	3.93085276011186	5.0205541500427	4.41154602027489	4.55724533040713	0.963737449227177	0.0436029780783137	0.29962687914296
Merged-chr10-81426144-2	chr10	81426044	81426244	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026756, intron 1 of 8)	intron (NM_026756, intron 1 of 8)	1029.0	NM_008688	18029.0	Mm.426936	NM_008688	ENSMUSG00000055053	Nfic	1110019L22Rik|1500041O16Rik|AA589446|AI746521|NF1-C	nuclear factor I/C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-105112242-2	chr5	105112142	105112342	+	915.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A2|LTR|ERVL-MaLR	-1950.0	NM_172777	236573.0	Mm.425261	NM_172777	ENSMUSG00000029298	Gbp9	-	guanylate-binding protein 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-36557752-1	chr5	36557652	36557852	+	826.0	f0_balb.idr	intron (NM_133910, intron 2 of 13)	intron (NM_133910, intron 2 of 13)	24645.0	NM_133910	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	2.29279913611538	2.10273671120932	2.03127628523022	1.39523442278487	1.88967425372757	2.11848350511252	1.43439564201808	1.57985069201362	-0.616198684726607	0.541978690200261	0.954866069207078
Merged-chr14-63437378-5	chr14	63437298	63437498	+	932.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177628, intron 1 of 3)	intron (NM_177628, intron 1 of 3)	1004.0	NM_177628	219148.0	Mm.37882	NM_177628	ENSMUSG00000035095	Fam167a	A030013D21	family with sequence similarity 167, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-34036769-4	chr10	34036625	34036825	+	761.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162937)	promoter-TSS (NM_001162937)	-872.0	NM_001162937	692132.0	Mm.383415	NM_001162937	ENSMUSG00000071340	Trappc3l	Bet3l	trafficking protein particle complex 3 like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-105129985-3	chr9	105129881	105130081	+	928.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_029385, exon 3 of 3)	3' UTR (NM_029385, exon 3 of 3)	1824.0	NM_029385	75686.0	Mm.305810	NM_029385	ENSMUSG00000032565	Nudt16	2310041H06Rik|2810047L04Rik|2900006H04Rik|AI851783	nudix (nucleoside diphosphate linked moiety X)-type motif 16	protein-coding	2.66945499492695	2.73377345222656	1.99240685474242	4.23224038702924	3.9235270245194	4.14596421761125	3.591840309458	4.66377201237803	1.34548312307983	0.0351917859289669	0.265554117972166
Merged-chr1-6214711-4	chr1	6214625	6214825	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009826)	promoter-TSS (NM_009826)	63.0	NM_009826	12421.0	Mm.293811	NM_009826	ENSMUSG00000025907	Rb1cc1	2900055E04Rik|5930404L04Rik|Cc1|FIP200|LaXp180	RB1-inducible coiled-coil 1	protein-coding	3.93630939675667	4.27841764043816	5.31037393948877	4.56255444524608	4.65485829644995	4.30920865250651	4.96124589102956	4.58415538247742	0.0370879385382252	0.927823904745463	0.998431161219273
Merged-chr6-122764653-2	chr6	122764553	122764753	+	736.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-21908.0	NM_011401	20527.0	Mm.395108	NM_011401	ENSMUSG00000003153	Slc2a3	AA408729|AL023014|AL024341|AU040424|C78366|Glut-3|Glut3	solute carrier family 2 (facilitated glucose transporter), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-15976110-4	chr7	15976013	15976213	+	855.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081418, intron 10 of 13)	intron (NM_001081418, intron 10 of 13)	-8578.0	NM_153068	259300.0	Mm.138215	NM_153068	ENSMUSG00000074364	Ehd2	BC027084|C130052H20Rik	EH-domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-48853027-2	chr11	48852927	48853127	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15556.0	NM_001347446	94089.0	Mm.390335	NM_053166	ENSMUSG00000040350	Trim7	AI790312	tripartite motif-containing 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-154016991-2	chr1	154016891	154017091	+	855.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	117062.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-30039417-4	chr16	30039440	30039640	+	880.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045878)	promoter-TSS (NR_045878)	-61.0	NR_045878	71528.0	Mm.297640	NR_045878		9030404E10Rik	-	RIKEN cDNA 9030404E10 gene	ncRNA	0.479949827133705	-0.476226344417055	-0.480921036948336	-0.484559146304384	-0.192352834666734	-0.475171277777937	-0.479883590088357	-0.483922557072325	-2.09376299032099	0.438559181413919	1
Merged-chr19-5879206-2	chr19	5879106	5879306	+	796.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134154, intron 1 of 5)	intron (NM_134154, intron 1 of 5)	1384.0	NM_001361974	107375.0	Mm.5323	NM_134154	ENSMUSG00000024818	Slc25a45	AW491445	solute carrier family 25, member 45	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-124456838-2	chr9	124456738	124456938	+	716.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20024.0	NM_001163415	19054.0	Mm.271249	NM_011154	ENSMUSG00000093803	Ppp2r3d	PP2A B''-PR59|PP2A PR59|PR59|Ppp2r3|Ppp2r3a	protein phosphatase 2 (formerly 2A), regulatory subunit B'', delta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-73326038-1	chr11	73325938	73326138	+	576.0	f0_balb.idr	Intergenic	Intergenic	-1401.0	NM_023113	11484.0	Mm.293574	NM_023113	ENSMUSG00000020774	Aspa	Acy-2|Acy2|nur7	aspartoacylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-66827614-4	chr4	66827516	66827716	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021297)	promoter-TSS (NM_021297)	65.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-47395058-3	chr19	47394985	47395185	+	734.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008018, intron 3 of 14)	B1_Mur4|SINE|Alu	69326.0	NM_001164717	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	-1.1000153649687	-1.07922802209952	-1.09015834808889	-1.09695034511635	-0.83418652570522	-1.07685937486068	-1.08768396187082	-0.67530516418638	2.65610859557207	0.40904259789681	1
Merged-chr11-69063759-6	chr11	69063723	69063923	+	980.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4048.0	NM_028005	71923.0	Mm.340257	NM_028005	ENSMUSG00000045176	Borcs6	2310047M10Rik	BLOC-1 related complex subunit 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126792544-4	chr7	126792455	126792655	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360464)	promoter-TSS (NM_001360464)	-8.0	NM_019674	56420.0	Mm.41998	NM_019674	ENSMUSG00000030697	Ppp4c	1110002D08Rik|AU016079|PP-X|PP4C|Ppx|pp4	protein phosphatase 4, catalytic subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-28959681-3	chr13	28959578	28959778	+	974.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-5979.0	NM_009238	20677.0	Mm.240627	NM_009238	ENSMUSG00000076431	Sox4	AA682046|Sox-4	SRY (sex determining region Y)-box 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-192598567-2	chr1	192598467	192598667	+	614.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144881, intron 9 of 11)	intron (NM_144881, intron 9 of 11)	172652.0	NM_144881	226861.0	Mm.145857	NM_144881	ENSMUSG00000037375	Hhat	2810432O22Rik|AI462858|AP-2CRE|Skn|Tg(TFAP2A-cre)1Will	hedgehog acyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-62550490-4	chr11	62550427	62550627	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_002875)	promoter-TSS (NR_002875)	-644.0	NM_011664	22187.0	Mm.371592	NM_011664	ENSMUSG00000019505	Ubb	AL033289|Rps27a|Uba52|Ubb2|Ubc	ubiquitin B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-6446882-2	chr4	6446782	6446982	+	803.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010945, intron 1 of 30)	intron (NM_010945, intron 1 of 30)	7389.0	NM_010945	18201.0	Mm.3059	NM_010945	ENSMUSG00000028245	Nsmaf	AA959567|C630007J05|Fan	neutral sphingomyelinase (N-SMase) activation associated factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-86763450-2	chr11	86763350	86763550	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR10C|LTR|ERVK	-5883.0	NM_001356393	67300.0	Mm.254588	NM_001003908	ENSMUSG00000047126	Cltc	3110065L21Rik|CHC|R74732	clathrin, heavy polypeptide (Hc)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-164912326-4	chr2	164912219	164912419	+	998.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199027)	promoter-TSS (NM_199027)	-569.0	NM_199027	329559.0	Mm.330776	NM_199027	ENSMUSG00000039834	Zfp335	1810045J01Rik|NIF-1|Nif1|Znf335	zinc finger protein 335	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-125351814-2	chr8	125351724	125351924	+	866.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	141009.0	NM_001081337	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	-1.1306715186527	-1.10797379294626	-1.11906441266486	-1.12746538082009	-0.983028288140964	-1.10557040938762	-1.11655373946004	-0.585566221273974	2.70127814494298	0.400998399340136	1
Merged-chr9-63642449-4	chr9	63642361	63642561	+	942.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_151671, exon 10 of 10)	non-coding (NR_151671, exon 10 of 10)	39815.0	NR_151671	66939.0	Mm.34338	NM_025857	ENSMUSG00000037257	Aagab	2310007F21Rik|p34	alpha- and gamma-adaptin binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-44818805-4	chr10	44818696	44818896	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-248418.0	NM_011156	19072.0	Mm.10281	NM_011156	ENSMUSG00000019849	Prep	AI047692|AI450383|D10Wsu136e|PEP|Pop	prolyl endopeptidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-78407803-4	chr17	78407701	78407901	+	876.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360407, intron 2 of 9)	intron (NM_001360407, intron 2 of 9)	10351.0	NM_001285949	225020.0	Mm.236835	NM_199448	ENSMUSG00000056121	Fez2	9030616F16|D17Ertd315e	fasciculation and elongation protein zeta 2 (zygin II)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-79650780-4	chr15	79650695	79650895	+	766.608337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029407, intron 1 of 17)	B1F1|SINE|Alu	8161.0	NM_029407	75729.0	Mm.78946	NM_029407	ENSMUSG00000042564	Fam227a	4933432B09Rik	family with sequence similarity 227, member A	protein-coding	3.19413293086045	3.57466259055209	2.2777035330962	2.76506935914084	3.50806452132232	3.5282354464758	1.86560046930846	2.38674105739724	-0.0402224664680448	0.957459874896207	0.998431161219273
Merged-chr1-95313642-4	chr1	95313550	95313750	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026321)	promoter-TSS (NM_026321)	22.0	NM_026321	67698.0	Mm.272705	NM_026321	ENSMUSG00000051185	Fam174a	2310044D20Rik|Fam174|Naa6|Tmem157	family with sequence similarity 174, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-25327653-2	chr10	25327553	25327753	+	552.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A1|LTR|ERVL-MaLR	-28490.0	NM_018747	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-108288385-2	chr13	108288285	108288485	+	802.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-27952.0	NM_178683	218581.0	Mm.32318	NM_178683	ENSMUSG00000021697	Depdc1b	9830132O03|AW260467|XTP1	DEP domain containing 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-68983707-4	chr2	68983607	68983807	+	790.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347161, intron 3 of 10)	ID_B1|SINE|B4	122266.0	NM_001347161	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-117408457-2	chr5	117408357	117408557	+	686.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-5545.0	NM_001312914	333050.0	Mm.437947	NM_001034873	ENSMUSG00000061578	Ksr2	-	kinase suppressor of ras 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-70180546-2	chr1	70180446	70180646	+	892.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_025728, intron 2 of 7)	intron (NM_025728, intron 2 of 7)	228931.0	NM_025728	66722.0	Mm.440554	NM_025728	ENSMUSG00000053153	Spag16	4921511D23Rik|4930524F24Rik|4930585K05Rik|AV261009|Pf20|Wdr29	sperm associated antigen 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-89346237-4	chr7	89346125	89346325	+	973.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360746, intron 2 of 14)	MLT1J|LTR|ERVL-MaLR	-7438.0	NM_001360745	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34197674-4	chr17	34197580	34197780	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010724)	promoter-TSS (NM_010724)	-515.0	NM_010724	16913.0	Mm.180191	NM_010724	ENSMUSG00000024338	Psmb8	Lmp-7|Lmp7	proteasome (prosome, macropain) subunit, beta type 8 (large multifunctional peptidase 7)	protein-coding	5.14714247052258	4.95839827431444	4.89138869274684	4.59134458688385	5.20871396616988	5.07727486052464	5.11791929756999	5.0818757731688	0.250055518892035	0.421909808463196	0.900322118218157
Merged-chr6-85239267-3	chr6	85239169	85239369	+	904.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178639, intron 10 of 13)	intron (NM_178639, intron 10 of 13)	51338.0	NM_010131	13796.0	Mm.391473	NM_010131	ENSMUSG00000033726	Emx1	-	empty spiracles homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21547179-4	chr9	21547072	21547272	+	995.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_021531, exon 1 of 16)	exon (NM_021531, exon 1 of 16)	278.0	NM_153141	59035.0	Mm.178115	NM_021531	ENSMUSG00000032185	Carm1	Prmt4	coactivator-associated arginine methyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-48867190-1	chr5	48867090	48867290	+	564.0	f1_c57bl6.idr	intron (NM_001199244, intron 1 of 7)	MERVL_2A-int|LTR|ERVL	22367.0	NM_030265	80334.0	Mm.160172	NM_030265	ENSMUSG00000029088	Kcnip4	AV032399|Calp|Calp250|KChIP4|KChIP4a	Kv channel interacting protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-31224301-4	chr15	31224214	31224414	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146057)	promoter-TSS (NM_146057)	-71.0	NM_146057	223453.0	Mm.222867	NM_146057	ENSMUSG00000039168	Dap	4921531N22Rik|AI789753|AU040360	death-associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-18007253-4	chr5	18007146	18007346	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081143, intron 5 of 7)	intron (NM_001081143, intron 5 of 7)	44676.0	NM_001081143	242851.0	Mm.332230	NM_001081143	ENSMUSG00000028777	Gnat3	Ggust|Gtn	guanine nucleotide binding protein, alpha transducing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-78249817-3	chr17	78249685	78249885	+	775.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015800, intron 2 of 16)	intron (NM_015800, intron 2 of 16)	49537.0	NM_015800	50766.0	Mm.311912	NM_015800	ENSMUSG00000024074	Crim1	AU015004	cysteine rich transmembrane BMP regulator 1 (chordin like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-107096551-4	chr8	107096465	107096665	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286200)	promoter-TSS (NM_001286200)	-20.0	NR_104410	21750.0	Mm.6402	NM_009353	ENSMUSG00000031921	Terf2	TRF2	telomeric repeat binding factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65531646-2	chr9	65531546	65531746	+	714.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48441.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127263182-4	chr10	127263087	127263287	+	784.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_008447, exon 1 of 28)	5' UTR (NM_008447, exon 1 of 28)	176.0	NM_008447	16572.0	Mm.30355	NM_008447	ENSMUSG00000074657	Kif5a	D10Bwg0738e|Khc|Kif5|Kns|mKIAA4086	kinesin family member 5A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-115449274-2	chr2	115449174	115449374	+	606.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	62927.0	NR_030712	100043232.0	Mm.240112	NR_030712	ENSMUSG00000085582	3110099E03Rik	-	RIKEN cDNA 3110099E03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-108326650-3	chr6	108326568	108326768	+	892.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 4 of 61)	intron (NM_010585, intron 4 of 61)	113572.0	NM_010585	16438.0	Mm.227912	NM_010585	ENSMUSG00000030102	Itpr1	D6Pas2|Gm10429|IP3R 1|IP3R1|InsP3R|Ip3r|Itpr-1|P400|Pcp-1|Pcp1|insP3R1|opt|wblo	inositol 1,4,5-trisphosphate receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-3623969-2	chr8	3623869	3624069	+	781.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001195244, exon 4 of 4)	3' UTR (NM_001195244, exon 4 of 4)	1080.0	NM_001129804	18545.0	Mm.440882	NM_008790	ENSMUSG00000004630	Pcp2	L7|Pcp-2	Purkinje cell protein 2 (L7)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-32359352-3	chr4	32359259	32359459	+	989.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58076.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-90206710-4	chr9	90206616	90206816	+	932.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 12 of 12)	intron (NM_194334, intron 12 of 12)	43738.0	NM_001311115	108153.0	Mm.102141	NM_001003911	ENSMUSG00000032363	Adamts7	ADAM-TS7|ADAMTS7B	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-24676871-1	chr1	24676771	24676971	+	567.5	f0_balb.idr	Intergenic	Intergenic	-1673.0	NM_026719	68421.0	Mm.336563	NM_026719	ENSMUSG00000073725	Lmbrd1	0910001K20Rik|AV347960	LMBR1 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6061204-4	chr19	6061149	6061349	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013859)	promoter-TSS (NM_013859)	42.0	NM_013859	29805.0	Mm.2310	NM_013859	ENSMUSG00000075227	Znhit2	C11orf5|Fon|ORF6|Znhit2-ps	zinc finger, HIT domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-57332485-4	chr17	57332390	57332590	+	835.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-26196.0	NM_001355723	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-41292213-4	chr8	41292112	41292312	+	905.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023662, intron 21 of 37)	intron (NM_023662, intron 21 of 37)	52453.0	NM_023662	18536.0	Mm.117896	NM_023662	ENSMUSG00000031592	Pcm1	2600002H09Rik|9430077F19Rik|C030044G17Rik	pericentriolar material 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-17221651-4	chr10	17221553	17221753	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	-125871.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-5847620-2	chr13	5847520	5847720	+	573.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10472.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-74250705-2	chr4	74250605	74250805	+	868.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001172095, intron 1 of 21)	B2_Mm1t|SINE|B2	-1174.0	NM_144787	76804.0	Mm.209059	NM_144787	ENSMUSG00000028397	Kdm4c	2410141F18Rik|AA517467|Gasc1|Jmjd2c	lysine (K)-specific demethylase 4C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-33248650-4	chr4	33248513	33248713	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001033225, exon 1 of 2)	5' UTR (NM_001033225, exon 1 of 2)	174.0	NM_001033225	108767.0	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-11197198-4	chr2	11197087	11197287	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008859, intron 1 of 17)	intron (NM_008859, intron 1 of 17)	24805.0	NM_008859	18761.0	Mm.329993	NM_008859	ENSMUSG00000026778	Prkcq	A130035A12Rik|AW494342|PKC-0|PKC-theta|PKCtheta|Pkcq	protein kinase C, theta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-86167984-3	chr17	86167897	86168097	+	898.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_011104, exon 1 of 15)	5' UTR (NM_011104, exon 1 of 15)	212.0	NM_011104	18754.0	Mm.24614	NM_011104	ENSMUSG00000045038	Prkce	5830406C15Rik|PKC[e]|PKCepsilon|Pkce|R75156	protein kinase C, epsilon	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-91459455-4	chr1	91459348	91459548	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011066)	promoter-TSS (NM_011066)	-120.0	NM_011066	18627.0	Mm.482463	NM_011066	ENSMUSG00000055866	Per2	mKIAA0347|mPer2	period circadian clock 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101261084-2	chr11	101260984	101261184	+	726.083313	f1_balb.idr|f1_c57bl6.idr	exon (NM_175638, exon 1 of 19)	exon (NM_175638, exon 1 of 19)	517.0	NM_175638	69847.0	Mm.23656	NM_175638	ENSMUSG00000035112	Wnk4	2010002J11Rik|Pha2b|Prkwnk4	WNK lysine deficient protein kinase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-100277051-3	chr12	100276962	100277162	+	652.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045741, intron 1 of 3)	intron (NR_045741, intron 1 of 3)	453.0	NR_045741	100038713.0	Mm.470751	NR_045741	ENSMUSG00000113679	Gm10432	-	predicted gene 10432	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-62767033-2	chr1	62766933	62767133	+	751.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077404, intron 10 of 16)	intron (NM_001077404, intron 10 of 16)	27699.0	NR_040601	74992.0	Mm.401979	NR_040601		4930487H11Rik	-	RIKEN cDNA 4930487H11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-39370646-6	chr10	39370506	39370706	+	918.7333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122893, intron 1 of 13)	intron (NM_001122893, intron 1 of 13)	807.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-111930117-4	chr13	111930021	111930221	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	62185.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-45218063-4	chr14	45217988	45218188	+	936.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310534, intron 2 of 20)	intron (NM_001310534, intron 2 of 20)	1337.0	NM_172597	70561.0	Mm.28129	NM_172597	ENSMUSG00000021830	Txndc16	5730420B22Rik|C77647	thioredoxin domain containing 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-114921878-4	chr6	114921779	114921979	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177683)	promoter-TSS (NM_177683)	-58.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6275352-4	chr19	6275269	6275469	+	849.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1527.0	NM_010119	13660.0	Mm.30169	NM_010119	ENSMUSG00000024772	Ehd1	AA409636|Past1|RME-1	EH-domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-49684572-2	chr13	49684472	49684672	+	586.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_172015, intron 1 of 33)	intron (NM_172015, intron 1 of 33)	2442.0	NM_172015	105148.0	Mm.21118	NM_172015	ENSMUSG00000037851	Iars	2510016L12Rik|AI327140|AU044614|E430001P04Rik|ILRS	isoleucine-tRNA synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-81309762-1	chr7	81309662	81309862	+	740.0	f1_balb.idr	intron (NM_008803, intron 11 of 21)	intron (NM_008803, intron 11 of 21)	35472.0	NM_009092	20068.0	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	0.625310061257418	0.372644105213551	1.14397842550824	0.359315460961052	0.632400977119233	0.886466684758193	0.366791596136358	0.677306491218628	-0.134023141282654	0.93851666331396	1
Merged-chr11-120991315-4	chr11	120991202	120991402	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_139059)	promoter-TSS (NM_139059)	31.0	NM_139059	104318.0	Mm.216227	NM_027874	ENSMUSG00000025162	Csnk1d	1200006A05Rik|AA409348|D930010H05Rik	casein kinase 1, delta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-127107580-3	chr6	127107481	127107681	+	598.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177003, intron 1 of 5)	intron (NM_177003, intron 1 of 5)	1971.0	NM_177003	319801.0	Mm.101836	NM_177003	ENSMUSG00000038028	Tigar	9630033F20Rik|AA793651|AI595337|C79710|C85509	Trp53 induced glycolysis repulatory phosphatase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-83619957-2	chr7	83619857	83620057	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_177695, exon 22 of 23)	exon (NM_177695, exon 22 of 23)	-12060.0	NM_023377	170460.0	Mm.357953	NM_023377	ENSMUSG00000046027	Stard5	2310058G22Rik|AI607880|D7Ertd152e	StAR-related lipid transfer (START) domain containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-34293022-4	chr6	34292930	34293130	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24413.0	NR_037965	626009.0	Mm.451	NR_028277		Gm6644	Akr1b3p|EG626009	Akr1b3 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-23617100-4	chr5	23617004	23617204	+	882.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009274)	promoter-TSS (NM_009274)	-533.0	NM_009274	20817.0	Mm.288728	NM_009274	ENSMUSG00000062604	Srpk2	AW226533|AW492537|AW547358|Wbp6|mSRPK2	serine/arginine-rich protein specific kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-44299495-3	chr19	44299392	44299592	+	766.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009128, intron 3 of 5)	intron (NM_009128, intron 3 of 5)	-3679.0	NR_039574	100628619.0		NR_039574	ENSMUSG00000093315	Mir5114	mmu-mir-5114|mu-mir-5114	microRNA 5114	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-137294116-2	chr5	137294016	137294216	+	930.8333130000001	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027356)	promoter-TSS (NM_027356)	336.0	NR_106196	102466887.0		NR_106196	ENSMUSG00000099145	Mir8116	Gm27485|mmu-mir-8116	microRNA 8116	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-118984418-2	chr14	118984318	118984518	+	566.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001081252)	TTS (NM_001081252)	46486.0	NM_008929	100037258.0	Mm.12616	NM_008929	ENSMUSG00000022136	Dnajc3	AA408985|AU067833|Dnajc3a|Dnajc3b|Prkri|mp58|p58|p58IPK	DnaJ heat shock protein family (Hsp40) member C3	protein-coding	0.105874691894765	-0.106875430591355	-0.110274383001157	0.246723938457227	0.00453874172008063	-0.106103304611401	0.0423509268037953	0.25171217363896	0.101714262134146	0.961351003654773	1
Merged-chr1-153425149-4	chr1	153425065	153425265	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033162)	promoter-TSS (NM_001033162)	-44.0	NM_001033162	71836.0	Mm.49460	NM_001033162	ENSMUSG00000042708	Shcbp1l	1700012A16Rik	Shc SH2-domain binding protein 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55767431-4	chr19	55767324	55767524	+	920.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001331146, intron 4 of 14)	intron (NM_001331146, intron 4 of 14)	25614.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120300973-4	chr8	120300862	120301062	+	797.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72732.0	NR_110496	434353.0	Mm.411793	NR_110496	ENSMUSG00000097960	A330074K22Rik	-	RIKEN cDNA A330074K22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81354351-2	chr10	81354251	81354451	+	576.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3140.0	NM_028657	73822.0	Mm.182281	NM_028657	ENSMUSG00000034854	Mfsd12	C19orf28|F630110N24Rik|Wdt1|gr	major facilitator superfamily domain containing 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-73579615-2	chr18	73579515	73579715	+	868.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039214, intron 1 of 1)	B3A|SINE|B2	6910.0	NM_001039214	240396.0	Mm.24131	NM_001039214	ENSMUSG00000037253	Mex3c	A130001D14Rik|BC035207|BM-013|Rkhd2	mex3 RNA binding family member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-137946674-2	chr3	137946574	137946774	+	999.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011932, intron 4 of 8)	intron (NM_011932, intron 4 of 8)	28119.0	NM_019920	56692.0	Mm.331392	NM_019920	ENSMUSG00000091512	Lamtor3	AW556229|Map2k1ip1|Mapbp|Mapksp1|Mp1	late endosomal/lysosomal adaptor, MAPK and MTOR activator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-22043916-3	chr16	22043810	22044010	+	901.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027488, intron 15 of 16)	intron (NR_027488, intron 15 of 16)	34426.0	NM_001357424	75826.0	Mm.297431	NM_029457	ENSMUSG00000022855	Senp2	2310007L05Rik|4930538C18Rik|AI646780|AW554757|Smt3ip2|SuPr-1|mKIAA1331	SUMO/sentrin specific peptidase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-103099091-6	chr14	103099058	103099258	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347601)	promoter-TSS (NM_001347601)	-154.0	NM_001347601	50789.0	Mm.214746	NM_015822	ENSMUSG00000022124	Fbxl3	AU041772|AW212966|FBK|Fbl3a|Fbxl3a|Ovtm|Play68	F-box and leucine-rich repeat protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-150927287-4	chr2	150927185	150927385	+	991.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027014, intron 5 of 6)	intron (NM_027014, intron 5 of 6)	17691.0	NM_001163476	69270.0	Mm.271603	NM_027014	ENSMUSG00000027454	Gins1	2810418N01Rik|Gins4|PSF1|mKIAA0186	GINS complex subunit 1 (Psf1 homolog)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-29975907-4	chr17	29975815	29976015	+	894.224976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29124.0	NM_148926	21769.0	Mm.220972	NM_148926	ENSMUSG00000044477	Zfand3	AW539211|TEG-27|Tex27	zinc finger, AN1-type domain 3	protein-coding	3.3128985037093	2.81764263216861	3.77016321948833	2.7693599619945	3.33962566020636	2.83895415665288	3.79757113162103	2.78408773292181	0.0390636929349545	0.950691943569961	0.998431161219273
Merged-chr5-99571826-1	chr5	99571726	99571926	+	548.0	f1_balb.idr	intron (NR_030692, intron 1 of 3)	intron (NR_030692, intron 1 of 3)	157234.0	NR_030692	319818.0	Mm.295233	NR_030692	ENSMUSG00000089809	A930011G23Rik	-	RIKEN cDNA A930011G23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-145275972-2	chr6	145275867	145276067	+	869.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25415.0	NR_045598	100039495.0	Mm.121014	NR_045598	ENSMUSG00000086013	Gm15706	-	predicted gene 15706	ncRNA	0.50327503672709	0.531097334836055	1.12423284077382	0.968501294856601	1.02003090584454	1.30219545188748	0.71651144065153	0.516247986922254	0.560950601515955	0.733132451976348	1
Merged-chr19-3586803-3	chr19	3586707	3586907	+	781.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008513, intron 21 of 22)	intron (NM_008513, intron 21 of 22)	-11058.0	NM_028999	52036.0	Mm.284686	NM_028999	ENSMUSG00000024908	Ppp6r3	4930528G08Rik|9130026N02Rik|D19Bwg1430e|D19Ertd703e|Pp6r3|Ppcs3|Pptcs3|Sapl|Saps3|mKIAA1558	protein phosphatase 6, regulatory subunit 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101261820-2	chr15	101261655	101261855	+	827.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5091.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0.102450443035437	-0.141549700223528	0.505716578126109	-0.14965828307396	-0.0131562844762007	0.209973150188867	-0.145121423692722	-0.149042511613324	-1.10090575757915	0.620476617092913	1
Merged-chr2-112243392-2	chr2	112243292	112243492	+	613.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_207206, intron 7 of 13)	intron (NM_207206, intron 7 of 13)	3551.0	NM_207206	99010.0	Mm.33438	NM_207206	ENSMUSG00000027134	Lpcat4	AI505034|Agpat7|Aytl3|LPEAT2	lysophosphatidylcholine acyltransferase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-107774085-2	chr3	107773913	107774113	+	742.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2c|LINE|L2	-13544.0	NM_001113529	12977.0	Mm.795	NM_007778	ENSMUSG00000014599	Csf1	C87615|Csfm|MCSF|op	colony stimulating factor 1 (macrophage)	protein-coding	-0.259673585883386	-0.532043080617659	-0.536378552330091	-0.539733795419614	0.363079933850021	-0.531067859294455	-0.535421044794984	-0.539146988379232	2.02533950363808	0.462751379876043	1
Merged-chr7-127846292-2	chr7	127846192	127846392	+	797.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009294, intron 7 of 10)	intron (NM_009294, intron 7 of 10)	4484.0	NM_009294	20909.0	Mm.24867	NM_009294	ENSMUSG00000030805	Stx4a	Stx4|Syn-4|Syn4	syntaxin 4A (placental)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-88243250-4	chr7	88243148	88243348	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34837.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89752202-2	chr3	89752102	89752302	+	667.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_019655, exon 15 of 15)	3' UTR (NM_019655, exon 15 of 15)	12430.0	NM_009602	11444.0	Mm.35088	NM_009602	ENSMUSG00000027950	Chrnb2	Acrb-2|Acrb2|C030030P04Rik|[b]2-nAchR	cholinergic receptor, nicotinic, beta polypeptide 2 (neuronal)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-87595630-3	chr11	87595544	87595744	+	913.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133215, intron 2 of 18)	CpG	3478.0	NM_133215	170749.0	Mm.399376	NM_133215	ENSMUSG00000018401	Mtmr4	AA596759|ESTM44|FYVE-DSP2|ZFYVE11|mKIAA0647	myotubularin related protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-55736545-3	chr1	55736370	55736570	+	562.5	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	intron (NM_001114663, intron 5 of 5)	intron (NM_001114663, intron 5 of 5)	-194771.0	NR_045837	329159.0	Mm.98697	NR_045837	ENSMUSG00000099950	9130227L01Rik	-	RIKEN cDNA 9130227L01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-25295152-3	chr10	25295019	25295219	+	861.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018747, intron 1 of 7)	intron (NM_018747, intron 1 of 7)	4044.0	NM_018747	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	2.80063664475517	3.08815515054553	2.40893680336943	1.97016736941574	2.00664781508879	1.23794760928979	1.70072242885836	1.17156039053962	-2.58602934807521	0.0100146301486571	0.109232302294171
Merged-chr17-70756024-3	chr17	70755906	70756106	+	840.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347411, intron 9 of 14)	intron (NM_001347411, intron 9 of 14)	90771.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-39442213-3	chr10	39442112	39442312	+	942.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122892, intron 2 of 12)	L2b|LINE|L2	72413.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129782044-4	chr4	129781954	129782154	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38425.0	NM_008974	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	3.61100321419234	3.07128183065045	3.38935044835053	3.53416491669288	3.51933946534926	3.7013448073382	3.32191931995376	3.75155013220313	0.247496240435121	0.637842098166047	0.982553932774682
Merged-chr2-167207313-2	chr2	167207213	167207413	+	767.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008968, exon 8 of 10)	exon (NM_008968, exon 8 of 10)	-18495.0	NM_008420	16500.0	Mm.205341	NM_008420	ENSMUSG00000050556	Kcnb1	Kcr1-1|Kv2.1|Shab	potassium voltage gated channel, Shab-related subfamily, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-13537353-2	chr13	13537253	13537453	+	920.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-53056.0	NM_010748	17101.0	Mm.342337	NM_010748	ENSMUSG00000019726	Lyst	D13Sfk13|beige|bg	lysosomal trafficking regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-109474366-2	chr11	109474266	109474466	+	996.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001029842)	promoter-TSS (NM_001029842)	-770.0	NM_001029842	104681.0	Mm.265874	NM_134038	ENSMUSG00000041920	Slc16a6	AW743111|ESTM12|MCT 6|MCT 7|MCT6	solute carrier family 16 (monocarboxylic acid transporters), member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-53406027-4	chr19	53405957	53406157	+	953.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15423.0	NM_172429	76479.0	Mm.313687	NM_172429	ENSMUSG00000025024	Smndc1	-	survival motor neuron domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-8227350-2	chr13	8227250	8227450	+	793.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_110345, intron 1 of 10)	intron (NR_110345, intron 1 of 10)	24484.0	NM_052977	94191.0	Mm.425794	NM_052977	ENSMUSG00000052551	Adarb2	Adar3|RED2	adenosine deaminase, RNA-specific, B2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-85830225-2	chr11	85830125	85830325	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_077059, intron 1 of 4)	intron (NR_077059, intron 1 of 4)	2163.0	NR_077059	69909.0	Mm.440214	NR_077059	ENSMUSG00000087013	2610027K06Rik	-	RIKEN cDNA 2610027K06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-75462768-4	chr18	75462669	75462869	+	919.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201354, intron 10 of 11)	intron (NM_201354, intron 10 of 11)	-51876.0	NR_045879	100038353.0	Mm.440724	NR_045879	ENSMUSG00000097712	Gm10532	-	predicted gene 10532	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-87658743-2	chr1	87658643	87658843	+	715.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110192, intron 2 of 26)	intron (NM_001110192, intron 2 of 26)	38431.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-86536991-1	chr1	86536891	86537091	+	577.0	f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	10434.0	NM_001360830	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-24546605-3	chr7	24546500	24546700	+	842.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001037143)	promoter-TSS (NM_001037143)	-99.0	NM_009532	22594.0	Mm.4347	NM_009532	ENSMUSG00000051768	Xrcc1	Xrcc-1	X-ray repair complementing defective repair in Chinese hamster cells 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-49213777-4	chr13	49213614	49213814	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026738, intron 1 of 5)	intron (NM_026738, intron 1 of 5)	2312.0	NM_026738	68480.0	Mm.3336	NM_026738	ENSMUSG00000037960	Card19	1110007C09Rik|AI851695|Bincard	caspase recruitment domain family, member 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-44565321-4	chr10	44565245	44565445	+	905.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-106597.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-86371483-4	chr6	86371380	86371580	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026506)	promoter-TSS (NM_026506)	-60.0	NM_026506	68011.0	Mm.276802	NM_026506	ENSMUSG00000057278	Snrpg	2810024K17Rik|AL022803|SMG|sm-G|snRNP-G	small nuclear ribonucleoprotein polypeptide G	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-30369618-2	chr5	30369518	30369718	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001100395, intron 46 of 46)	intron (NM_001100395, intron 46 of 46)	27955.0	NM_001033460	381738.0	Mm.389604	NM_001033460	ENSMUSG00000073102	Drc1	Ccdc164|Gm1060|b2b1654Clo	dynein regulatory complex subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-39402749-4	chr10	39402633	39402833	+	835.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122892, intron 2 of 12)	MTC|LTR|ERVL-MaLR	32934.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-138972260-4	chr4	138972166	138972366	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001305423)	promoter-TSS (NM_001305423)	-17.0	NM_001305423	77056.0	Mm.122336	NM_029857	ENSMUSG00000041143	Tmco4	4632413C14Rik|AI430825	transmembrane and coiled-coil domains 4	protein-coding	2.465013126548	1.26419537543837	1.88541126927359	2.11194874210035	2.2290934901367	2.27458391029066	3.05152181061006	1.20936474114476	0.78949871977488	0.445860927481184	0.913393182911653
Merged-chr1-64604393-2	chr1	64604293	64604493	+	723.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009952, exon 9 of 9)	3' UTR (NM_009952, exon 9 of 9)	12775.0	NM_025964	67099.0	Mm.46394	NM_025964	ENSMUSG00000025956	Mettl21a	2310038H17Rik|AI464204|Fam119a	methyltransferase like 21A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-36800100-2	chr19	36800000	36800200	+	772.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34132.0	NM_001163635	74493.0	Mm.249310	NM_001163635	ENSMUSG00000024811	Tnks2	5430432P15Rik|AA517131|AI662480|ARTD6|TNKS-2|Tank2	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-5711215-2	chr13	5711115	5711315	+	653.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	146877.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124551543-2	chr5	124551443	124551643	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-1321.0	NM_001190795	67848.0	Mm.281601	NM_026409	ENSMUSG00000029389	Ddx55	2810021H22Rik|mKIAA1595	DEAD (Asp-Glu-Ala-Asp) box polypeptide 55	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-34806449-4	chr8	34806352	34806552	+	895.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1158.0	NM_176933	319520.0	Mm.170276	NM_176933	ENSMUSG00000031530	Dusp4	2700078F24Rik|AI844617|BB104621|E130306H24Rik|MKP2	dual specificity phosphatase 4	protein-coding	2.01441419480532	1.05276839038859	0.17584442870697	0.415023704090705	0.146066880224101	0.194318905708799	0.179231170844071	0.165906242220278	-4.91527851814852	0.00691668558895888	0.0845474613779278
Merged-chr1-91030026-2	chr1	91029926	91030126	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111312, intron 1 of 12)	ORR1B2|LTR|ERVL-MaLR	-23418.0	NM_001111311	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132756452-2	chr4	132756352	132756552	+	843.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133888, intron 1 of 7)	intron (NM_133888, intron 1 of 7)	719.0	NM_133888	100340.0	Mm.287187	NM_133888	ENSMUSG00000028885	Smpdl3b	1110054A24Rik|AU045240|Asml3b	sphingomyelin phosphodiesterase, acid-like 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-55874928-2	chr1	55874828	55875028	+	848.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56313.0	NR_045837	329159.0	Mm.98697	NR_045837	ENSMUSG00000099950	9130227L01Rik	-	RIKEN cDNA 9130227L01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-66831533-1	chr9	66831433	66831633	+	759.5	f0_balb.idr	intron (NM_026674, intron 2 of 5)	intron (NM_026674, intron 2 of 5)	3173.0	NM_026674	68318.0	Mm.284229	NM_026674	ENSMUSG00000053040	Aph1c	0610008A10Rik|APH-1b|Aph1b	aph1 homolog C, gamma secretase subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-113619340-4	chr5	113619236	113619436	+	847.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008153, intron 1 of 2)	intron (NM_008153, intron 1 of 2)	24267.0	NM_001359060	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-54277377-4	chr3	54277281	54277481	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253682, intron 4 of 11)	intron (NM_001253682, intron 4 of 11)	-83726.0	NM_001198766	50706.0	Mm.236067	NM_015784	ENSMUSG00000027750	Postn	A630052E07Rik|AI747096|OSF-2|Osf2|PLF|PN	periostin, osteoblast specific factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135054610-1	chr4	135054510	135054710	+	576.0	f0_balb.idr	Intergenic	Intergenic	-66035.0	NM_019732	12399.0	Mm.378894	NM_019732	ENSMUSG00000070691	Runx3	AML2|Cbfa3|Pebp2a3	runt related transcription factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-87960232-4	chr1	87960151	87960351	+	919.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033291, intron 19 of 27)	intron (NM_001033291, intron 19 of 27)	48300.0	NM_001198573	227334.0	Mm.80484	NM_001033291	ENSMUSG00000005501	Usp40	B230215L03Rik|C730029K03	ubiquitin specific peptidase 40	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41481533-4	chr19	41481382	41481582	+	777.700012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43770.0	NM_001326287	627352.0	Mm.395111	NM_001326287		Morf4l1b	EG627352|Gm6747	mortality factor 4 like 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-84467914-4	chr1	84467823	84468023	+	873.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152915, intron 7 of 12)	intron (NM_152915, intron 7 of 12)	-183278.0	NM_001003948	98496.0	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4|P-CLI1	phosphotyrosine interaction domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-114840074-1	chr6	114839974	114840174	+	564.0	f0_balb.idr	intron (NM_001253718, intron 19 of 19)	intron (NM_001253718, intron 19 of 19)	81747.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-39944656-4	chr15	39944560	39944760	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172814)	promoter-TSS (NM_172814)	-666.0	NM_172814	239393.0	Mm.39874	NM_172814	ENSMUSG00000022305	Lrp12	AI848829|C820005L12Rik|LRP-12	low density lipoprotein-related protein 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-148151205-3	chr4	148151101	148151301	+	893.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_015797, exon 1 of 6)	5' UTR (NM_015797, exon 1 of 6)	724.0	NM_001163705	50762.0	Mm.27445	NM_015797	ENSMUSG00000055401	Fbxo6	AA408845|FBG2|Fbs2|Fbx6b|Fbxo6b	F-box protein 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-100459567-2	chr15	100459467	100459667	+	638.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9444.0	NM_001357983	68614.0	Mm.275272	NM_134093	ENSMUSG00000037353	Letmd1	1110019O13Rik|AI593524|BB130465|BB235638|HCCR-2|HCCR1|MCC-32|Mccr	LETM1 domain containing 1	protein-coding	0.132414640692365	0.963761306135884	0.14959885029197	0.333486416698277	0.134028640696604	1.08357620636031	0.151420198654913	0.336990628738123	0.271764212596019	0.889533712584983	1
Merged-chr12-81483844-2	chr12	81483744	81483944	+	870.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001309847, intron 3 of 5)	intron (NM_001309847, intron 3 of 5)	1007.0	NR_132135	66272.0	Mm.439970	NM_025461	ENSMUSG00000091803	Cox16	1810020G14Rik|1810055I05Rik|BB388670	cytochrome c oxidase assembly protein 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35232853-3	chr17	35232710	35232910	+	749.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010909, intron 2 of 3)	intron (NM_010909, intron 2 of 3)	-2200.0	NM_001347351	66237.0	Mm.396107	NM_023179	ENSMUSG00000024403	Atp6v1g2	1500002D01Rik|Atp6g2|NG38|VAG2	ATPase, H+ transporting, lysosomal V1 subunit G2	protein-coding	0.437381164968158	-0.175510137671149	-0.180082285397303	-0.18360452248606	0.0775018558953271	0.316563841493968	-0.179074538196573	-0.18298952401052	0.110057977793297	0.963201753858374	1
Merged-chr3-89456912-4	chr3	89456792	89456992	+	955.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310640, intron 1 of 3)	intron (NM_001310640, intron 1 of 3)	-2226.0	NM_026784	68603.0	Mm.34242	NM_026784	ENSMUSG00000027952	Pmvk	1110011E12Rik|2900002L22Rik|AV001327|PMK|PMKA|PMKASE	phosphomevalonate kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-65505996-4	chr18	65505845	65506045	+	936.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_105742, intron 3 of 6)	MTC-int|LTR|ERVL-MaLR	-74285.0	NM_207255	328977.0	Mm.286232	NM_207255	ENSMUSG00000042439	Zfp532	C530030I18Rik|Znf532|mKIAA1629	zinc finger protein 532	protein-coding	4.29865533135585	5.33097807974177	4.18334832381904	4.79081025143817	4.74852133441161	6.3452761945905	4.58152382757905	5.10244777204567	0.780484672941725	0.0721019121699354	0.404494424352347
Merged-chr13-112387523-1	chr13	112387423	112387623	+	563.0	f0_c57.idr	Intergenic	Intergenic	-76547.0	NM_010560	16195.0	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	-0.467972790517529	-0.712735069002513	-0.715719919106582	-0.206969493060071	-0.721239746602753	-0.712060335161402	-0.71506278132097	-0.558444406652863	-2.14530743992526	0.435583284199324	1
Merged-chr9-16934746-2	chr9	16934646	16934846	+	567.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-556515.0	NM_001080814	270120.0	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT atypical cadherin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-104334630-2	chr11	104334530	104334730	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001081045, exon 14 of 14)	3' UTR (NM_001081045, exon 14 of 14)	103194.0	NM_001285454	17762.0	Mm.1287	NM_010838	ENSMUSG00000018411	Mapt	AI413597|AW045860|Mtapt|Tau	microtubule-associated protein tau	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-20990799-4	chr10	20990726	20990926	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358561, intron 15 of 22)	intron (NM_001358561, intron 15 of 22)	38279.0	NM_001358561	52906.0	Mm.253280	NM_026203	ENSMUSG00000019986	Ahi1	1700015F03Rik|Ahi-1|D10Bwg0629e	Abelson helper integration site 1	protein-coding	2.16599668356547	2.07646679340649	2.61379048374666	1.81074305378112	1.58572184792439	1.28790426279107	2.0221913769788	2.47365670031973	-0.674600012523849	0.494078066229166	0.935679785535167
Merged-chr2-23041596-4	chr2	23041518	23041718	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	-1377.0	NM_145994	11308.0	Mm.205647	NM_007380	ENSMUSG00000058835	Abi1	E3B1|NAP1|Ssh3bp1|abi-1	abl-interactor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-136454960-4	chr4	136454850	136455050	+	713.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14811.0	NM_024452	269593.0	Mm.485824	NM_024452	ENSMUSG00000001089	Luzp1	2700072H04Rik|AI266952|Luzp|mFLJ00226	leucine zipper protein 1	protein-coding	1.39550233019233	1.7098807684102	2.2006784542374	1.46059944322313	1.77101503221556	2.10521605762472	1.32383040059452	1.4672634412424	-0.0972194614704817	0.927651499146461	0.998431161219273
Merged-chr16-76410498-4	chr16	76410419	76410619	+	903.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36692.0	NM_001358238	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-43739653-4	chr2	43739555	43739755	+	906.525024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9169.0	NM_001301832	76117.0	Mm.217350	NM_153820	ENSMUSG00000049744	Arhgap15	5830480G12Rik	Rho GTPase activating protein 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-47105193-4	chr13	47105076	47105276	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025900, intron 2 of 10)	intron (NM_025900, intron 2 of 10)	1045.0	NM_025900	110052.0	Mm.131150	NM_025900	ENSMUSG00000021377	Dek	1810019E15Rik|D13H6S231E	DEK oncogene (DNA binding)	protein-coding	1.77625505821961	3.2406402912508	2.73645451956435	2.25288229578371	1.30684068087928	3.49819947299366	3.73859343173235	2.54837199212306	0.797377497545477	0.360879695777019	0.856827425448417
Merged-chr15-31511934-2	chr15	31511834	31512034	+	629.099976	f1_balb.idr|f1_c57bl6.idr	intron (NM_172606, intron 1 of 25)	intron (NM_172606, intron 1 of 25)	19103.0	NM_172606	223455.0	Mm.272185	NM_172606	ENSMUSG00000039100	March6	3830408G03|F830029L24Rik|mKIAA0597	membrane-associated ring finger (C3HC4) 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-75954161-2	chr3	75954061	75954261	+	716.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291069, intron 1 of 15)	intron (NM_001291069, intron 1 of 15)	2788.0	NM_175193	73124.0	Mm.249232	NM_175193	ENSMUSG00000034109	Golim4	3110027H23Rik|GIMPC|GPP130|Golph4|P138	golgi integral membrane protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99700678-2	chr15	99700578	99700778	+	844.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001289791, exon 10 of 10)	3' UTR (NM_001289791, exon 10 of 10)	-1609.0	NM_031842	83797.0	Mm.273756	NM_031842	ENSMUSG00000023018	Smarcd1	AA407987|Baf60a|D15Kz1	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-59645462-4	chr2	59645360	59645560	+	935.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198294, intron 1 of 26)	intron (NM_198294, intron 1 of 26)	-1309.0	NM_001290659	66860.0	Mm.27917	NM_198294	ENSMUSG00000035168	Tanc1	1200003E16Rik|Tanc|mKIAA1728	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76724863-6	chr15	76724824	76725024	+	801.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001168288, exon 12 of 12)	3' UTR (NM_001168288, exon 12 of 12)	-1079.0	NM_176828	223665.0	Mm.291713	NM_145472	ENSMUSG00000116138	C030006K11Rik	1110033I13Rik	RIKEN cDNA C030006K11 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-157069171-2	chr2	157069071	157069271	+	702.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164663, intron 1 of 14)	intron (NM_001164663, intron 1 of 14)	10094.0	NM_001164663	320706.0	Mm.79466	NM_001164663	ENSMUSG00000055485	Soga1	9830001H06Rik|AI426038|D430036N24Rik|Soga	suppressor of glucose, autophagy associated 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45436728-2	chr7	45436628	45436828	+	698.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030678, intron 2 of 15)	intron (NM_030678, intron 2 of 15)	1889.0	NM_030678	14936.0	Mm.275654	NM_030678	ENSMUSG00000003865	Gys1	Gys3|MGS	glycogen synthase 1, muscle	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-35063123-4	chr4	35063029	35063229	+	976.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178061, intron 2 of 3)	intron (NM_178061, intron 2 of 3)	-88926.0	NM_199157	387510.0	Mm.386929	NM_199157	ENSMUSG00000042993	Ifnk	-	interferon kappa	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-155517038-2	chr2	155516938	155517138	+	594.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1005.0	NM_019811	60525.0	Mm.255026	NM_019811	ENSMUSG00000027605	Acss2	1110017C11Rik|ACAS|Acas1|Acas2|AceCS1|Acs1	acyl-CoA synthetase short-chain family member 2	protein-coding	1.17632211057285	0.522456828362775	0.513433426996343	1.07211026775603	1.18977667464612	0.524481800491325	0.515429366514015	1.07958308310362	0.0361133522003686	0.983487076684051	1
Merged-chr11-86615257-2	chr11	86615157	86615357	+	817.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356531, intron 7 of 11)	AT_rich|Low_complexity|Low_complexity	-31099.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-35740515-4	chr18	35740418	35740618	+	962.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289592)	promoter-TSS (NM_001289592)	36.0	NM_028261	72512.0	Mm.45995	NM_028261	ENSMUSG00000024349	Tmem173	2610307O08Rik|ERIS|MPYS|Mita|STING	transmembrane protein 173	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-26921657-2	chr2	26921557	26921757	+	551.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011512, exon 6 of 6)	3' UTR (NM_011512, exon 6 of 6)	-5127.0	NM_013677	20930.0	Mm.347512	NM_013677	ENSMUSG00000015790	Surf1	0610010F23Rik|Surf-1	surfeit gene 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-31227626-1	chr13	31227526	31227726	+	612.0	f0_balb.idr	intron (NR_045957, intron 1 of 2)	L1MA6|LINE|L1	13460.0	NR_045957	73924.0	Mm.417825	NR_045957	ENSMUSG00000087460	4930401O12Rik	-	RIKEN cDNA 4930401O12 gene	ncRNA	-1.17367364971587	-1.14665061133654	-1.15856004380685	-1.16834280623128	-1.17310571790619	-1.14406978763884	-0.42938571406771	-1.16659169643457	2.89727187181404	0.396361616615464	1
Merged-chr8-71597026-4	chr8	71596933	71597133	+	868.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166213)	promoter-TSS (NM_001166213)	-613.0	NM_001166213	100037278.0	Mm.482159	NM_001166213	ENSMUSG00000043243	Fam129c	Bcnp1	family with sequence similarity 129, member C	protein-coding	2.1235987200483	2.49809463192517	2.0194640312345	2.6298594963889	2.02114120109057	2.5163579881801	1.65727021716931	2.72338045514949	-0.0943370765646831	0.913030847376252	0.998431161219273
Merged-chr7-90461104-4	chr7	90461002	90461202	+	985.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR26_Mus|LTR|ERVK	-3894.0	NM_025460	66271.0	Mm.28963	NM_025460	ENSMUSG00000030615	Tmem126a	1810020E01Rik	transmembrane protein 126A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-21975446-1	chr10	21975346	21975546	+	793.0	f1_balb.idr	intron (NM_001161845, intron 3 of 13)	Lx8|LINE|L1	-3226.0	NM_001161847	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	0.0346989028696649	0.057303056447561	0.557016531636563	0.0442673913469789	0.0361303175577349	0.0589461286199922	0.423692130274462	1.08734104616082	1.81020183363305	0.398854273014404	1
Merged-chr10-39378175-4	chr10	39378067	39378267	+	940.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122893, intron 1 of 13)	intron (NM_001122893, intron 1 of 13)	8368.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101453446-4	chr15	101453300	101453500	+	967.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025487, intron 4 of 4)	intron (NM_025487, intron 4 of 4)	5655.0	NM_025487	66322.0	Mm.158111	NM_025487	ENSMUSG00000063971	Krt88	1700011A15Rik	keratin 88	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-155492100-2	chr4	155492000	155492200	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001160017, intron 1 of 10)	CpG	739.0	NM_001160016	14688.0	Mm.2344	NM_008142	ENSMUSG00000029064	Gnb1	AA409223|C77571|Gnb-1	guanine nucleotide binding protein (G protein), beta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-33396682-4	chr4	33396586	33396786	+	810.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305273, intron 12 of 15)	intron (NM_001305273, intron 12 of 15)	-41395.0	NR_106198	102465904.0		NR_106198	ENSMUSG00000098310	Mir8118	Gm27954|mmu-mir-8118	microRNA 8118	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16262386-2	chr7	16262286	16262486	+	616.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	-2846.0	NM_007577	12273.0	Mm.247623	NM_007577	ENSMUSG00000049130	C5ar1	C5aR|C5r1|Cd88|D7Msu1	complement component 5a receptor 1	protein-coding	0.508882661434517	0.415378108360419	0.245775431708497	0.0796204167957678	0.518453211163029	0.270478434268608	0.0843433079722053	0.0802605904916988	-0.533105538210175	0.78734688144113	1
Merged-chr2-19343085-1	chr2	19342985	19343185	+	549.0	f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-1232.0	NR_126563	108871.0	Mm.107666	NR_126563		4930447M23Rik	-	RIKEN cDNA 4930447M23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-11288375-4	chr16	11288261	11288461	+	873.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25448.0	NM_011608	21935.0	Mm.12935	NM_011608	ENSMUSG00000022496	Tnfrsf17	BCM|BCMA|Tnfrsf13|Tnfrsf13a	tumor necrosis factor receptor superfamily, member 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-84356802-4	chr3	84356702	84356902	+	766.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040752, intron 3 of 3)	RSINE1|SINE|B4	23119.0	NR_040752	75309.0	Mm.159497	NR_040752	ENSMUSG00000104004	4930565D16Rik	-	RIKEN cDNA 4930565D16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-93985590-2	chr11	93985490	93985690	+	643.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10501.0	NM_001199203	70834.0	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-89356511-2	chr7	89356411	89356611	+	767.958374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360746, intron 1 of 14)	intron (NM_001360746, intron 1 of 14)	-17724.0	NM_001360745	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-179518019-4	chr1	179517922	179518122	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027188)	promoter-TSS (NM_027188)	19.0	NM_027188	69726.0	Mm.222338	NM_027188	ENSMUSG00000055067	Smyd3	2410008A19Rik|Zmynd1	SET and MYND domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45301489-2	chr7	45301389	45301589	+	819.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18616.0	NM_001033176	76713.0	Mm.425445	NM_001033176	ENSMUSG00000070568	Slc6a21	1700039E15Rik|Gm19188	solute carrier family 6 member 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56506835-2	chr17	56506735	56506935	+	876.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5648.0	NM_011483	20834.0	Mm.76862	NM_011483	ENSMUSG00000044526	Znrf4	1700094M01Rik|Ssrzf1|spzn	zinc and ring finger 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-16672530-1	chr1	16672430	16672630	+	658.0	f1_c57bl6.idr	intron (NM_027415, intron 2 of 2)	intron (NM_027415, intron 2 of 2)	7339.0	NM_026392	70397.0	Mm.194225	NM_026392	ENSMUSG00000025940	Tmem70	1110020A09Rik|2210416J16Rik	transmembrane protein 70	protein-coding	-1.18378942727406	-1.15669478905697	-0.457913181653105	-1.17806440097404	-1.18323730008524	-1.15415234459186	-1.16577117532349	-1.17633933179771	-2.81844548480871	0.412768592413622	1
Merged-chr4-62630165-4	chr4	62630042	62630242	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019492, intron 14 of 19)	intron (NM_019492, intron 14 of 19)	10470.0	NM_134257	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	1.93836106051178	3.04504432075586	2.83874821464089	3.33628811027613	2.73740848160306	3.25799155594377	2.6165589689617	3.13873747856074	0.139279073375108	0.843871335549566	0.998431161219273
Merged-chr12-84854752-3	chr12	84854658	84854858	+	987.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013589, intron 2 of 34)	URR1B|DNA|hAT-Charlie	-21044.0	NR_028577	100303738.0	Mm.479389	NR_028577	ENSMUSG00000092130	D030025P21Rik	-	RIKEN cDNA D030025P21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-86444208-4	chr1	86444097	86444297	+	859.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17868.0	NM_027966	71863.0	Mm.179627	NM_027966	ENSMUSG00000036574	Tex44	1700019O17Rik	testis expressed 44	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-8799327-2	chr19	8799227	8799427	+	975.375	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026329)	promoter-TSS (NM_026329)	-770.0	NM_026329	67710.0	Mm.22117	NM_026329	ENSMUSG00000071662	Polr2g	2410046K11Rik|A230108L04Rik|C76415|RBP7|Rpo2-7l	polymerase (RNA) II (DNA directed) polypeptide G	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-25313291-1	chr10	25313191	25313391	+	647.0	f0_balb.idr	Intergenic	Intergenic	-14128.0	NM_018747	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	-0.929183846441331	-0.914712271783088	-0.923452494733342	-0.762283270049353	-0.928653183146279	-0.421051053869998	-0.922834628301503	-0.759648531870728	1.93674442080874	0.500522373609932	1
Merged-chr17-65730493-4	chr17	65730391	65730591	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133685, intron 1 of 6)	intron (NM_133685, intron 1 of 6)	42261.0	NM_133685	106572.0	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-109331546-4	chr11	109331442	109331642	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15325.0	NR_027883	67927.0	Mm.394490	NR_027883	ENSMUSG00000099630	1700096J18Rik	-	RIKEN cDNA 1700096J18 gene	ncRNA	4.23272223572429	4.88700930914507	4.69901689834099	4.39770967110502	4.69676397074418	4.47417790770845	4.07741938744292	4.14755059805384	-0.246117843586512	0.528532648257854	0.949209944897898
Merged-chr11-67564379-4	chr11	67564273	67564473	+	978.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008088, intron 1 of 13)	intron (NM_008088, intron 1 of 13)	-22127.0	NM_001109657	14457.0	Mm.40338	NM_008088	ENSMUSG00000033066	Gas7	AW124766|B230343A10Rik|Gas7-cb	growth arrest specific 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-37693114-1	chr3	37693014	37693214	+	686.5	f0_balb.idr	Intergenic	C-rich|Low_complexity|Low_complexity	31246.0	NM_198657	381438.0	Mm.490549	NM_198657	ENSMUSG00000058174	Gm5148	EG381438	predicted gene 5148	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-49300842-3	chr13	49300745	49300945	+	919.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015759, intron 1 of 17)	intron (NM_015759, intron 1 of 17)	8363.0	NM_015759	30938.0	Mm.291089	NM_015759	ENSMUSG00000037946	Fgd3	5830461L01Rik|ZFYVE5	FYVE, RhoGEF and PH domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-50529358-2	chr9	50529258	50529458	+	971.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011220)	promoter-TSS (NM_011220)	-717.0	NM_011220	19286.0	Mm.35856	NM_011220	ENSMUSG00000032067	Pts	PTPS	6-pyruvoyl-tetrahydropterin synthase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-100706583-1	chr5	100706483	100706683	+	544.0	f1_balb.idr	intron (NM_152803, intron 3 of 11)	Tigger1|DNA|TcMar-Tigger	13133.0	NM_152803	15442.0	Mm.265786	NM_152803	ENSMUSG00000035273	Hpse	HSE1|Hpa|Hpr1	heparanase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-79029997-2	chr11	79029897	79030097	+	655.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001348207, intron 8 of 17)	intron (NM_001348207, intron 8 of 17)	6400.0	NR_045873	790910.0	Mm.440410	NR_045873		Gm11201	-	predicted gene 11201	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-8370474-4	chr18	8370405	8370605	+	807.195862	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	500792.0	NM_001360956	225131.0	Mm.204524	NM_153085	ENSMUSG00000024283	Wac	1110067P07Rik|A230035H12Rik|AI256735|AI256776|Wwp4	WW domain containing adaptor with coiled-coil	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-30032857-2	chr19	30032757	30032957	+	763.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144873, intron 1 of 15)	B3|SINE|B2	2344.0	NM_144873	109113.0	Mm.313364	NM_144873	ENSMUSG00000024817	Uhrf2	2310065A22Rik|AI426270|AW214556|D130071B19Rik|Nirf	ubiquitin-like, containing PHD and RING finger domains 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-67600126-4	chr5	67600026	67600226	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7757.0	NM_001033415	330096.0	Mm.442747	NM_001033415	ENSMUSG00000050010	Shisa3	D830007B15Rik	shisa family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-156034865-2	chr1	156034765	156034965	+	832.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001160019)	promoter-TSS (NM_001160019)	-48.0	NM_001160019	208263.0	Mm.211654	NM_144791	ENSMUSG00000026466	Tor1aip1	LAP1|Lap1B	torsin A interacting protein 1	protein-coding	3.66709369861948	3.49368027408502	2.88814597847693	2.92003036123582	3.69407337655896	3.12723805219445	3.0251905856268	3.13316660066919	-0.0161361138931249	0.978471968795431	0.998431161219273
Merged-chr18-33790233-4	chr18	33790128	33790328	+	679.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4664.0	NR_038152	69749.0	Mm.248787	NR_038151	ENSMUSG00000087590	Epb41l4aos	2410004N09Rik|Epb4.1l4aos	erythrocyte membrane protein band 4.1 like 4a, opposite strand	ncRNA	3.29967721389757	3.61635086743273	4.24189158918147	3.64192765086718	4.23378191933752	3.64301567439946	3.77437326320868	4.15191902781603	0.339999454238428	0.484952494955412	0.931753689758342
Merged-chr4-62681634-4	chr4	62681543	62681743	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310706, intron 1 of 6)	intron (NM_001310706, intron 1 of 6)	7669.0	NM_001310706	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	2.03820481364371	1.0140939958999	0.988293894571848	1.21062025029225	2.2888436472887	1.01976680334266	2.04812175455212	2.5538373577057	1.87848877222934	0.130424279993817	0.56544727863238
Merged-chr11-93812696-3	chr11	93812597	93812797	+	735.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	73069.0	NM_001013375	217109.0	Mm.379350	NM_001013375	ENSMUSG00000054079	Utp18	6230425C22Rik|6430513M13|Wdr50	UTP18 small subunit processome component	protein-coding	1.91412076428698	2.14599620274982	1.23066955048791	2.12203331367445	1.6923430779469	2.38291899151427	1.82409406907148	2.02574852376315	0.27520712125502	0.78379151945694	0.998431161219273
Merged-chr6-4977647-4	chr6	4977541	4977741	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181595, intron 2 of 15)	MTE2a|LTR|ERVL-MaLR	74321.0	NM_181595	243725.0	Mm.332901	NM_181595	ENSMUSG00000032827	Ppp1r9a	2810430P21Rik|4930518N04Rik|5330407E15|A230094E16Rik|BB181831|NRB|mKIAA1222|neurabin-I	protein phosphatase 1, regulatory (inhibitor) subunit 9A	protein-coding	4.07869510174149	5.12960640055105	3.10783213951448	4.3884924758408	4.11163350446308	5.16176674407159	3.13592688301336	4.40959954337601	0.0372136320641406	0.94511787972498	0.998431161219273
Merged-chr10-94126627-1	chr10	94126527	94126727	+	641.0	f1_balb.idr	intron (NM_053072, intron 13 of 20)	ORR1B2|LTR|ERVL-MaLR	-21304.0	NM_011629	22025.0	Mm.107483	NM_011629	ENSMUSG00000005897	Nr2c1	4831444H07Rik|80.3|Eenr|TR2|Tr2-11	nuclear receptor subfamily 2, group C, member 1	protein-coding	2.14623148804019	1.1454541989171	0.634203741628889	0.618723322306234	1.15304200604356	2.06349461538199	0.638545837867919	0.621461404854749	-0.120671446410911	0.937838633056217	0.998431161219273
Merged-chr8-46837201-4	chr8	46837096	46837296	+	993.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008391, intron 6 of 8)	intron (NM_008391, intron 6 of 8)	97451.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65542930-2	chr9	65542830	65543030	+	761.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	37157.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-17522341-4	chr10	17522226	17522426	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-200902.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-103019527-5	chr3	103019436	103019636	+	746.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F2|SINE|Alu	-1010.0	NM_001310693	229663.0	Mm.277713	NM_144901	ENSMUSG00000068823	Csde1	AA960392|BC016898|D3Jfr1|mKIAA0885|unr	cold shock domain containing E1, RNA binding	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10865284-2	chr19	10865184	10865384	+	642.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_133804, exon 4 of 11)	exon (NM_133804, exon 4 of 11)	4495.0	NM_133804	98170.0	Mm.490254	NM_133804	ENSMUSG00000024736	Tmem132a	6720481D13Rik|Hspa5bp1|Orai1|R74613	transmembrane protein 132A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-95656824-2	chr1	95656724	95656924	+	697.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159745, intron 2 of 3)	intron (NM_001159745, intron 2 of 3)	10770.0	NM_009183	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-91210200-4	chr10	91210109	91210309	+	993.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151510, intron 3 of 3)	MTD|LTR|ERVL-MaLR	10410.0	NR_151510	102633753.0	Mm.416936	NR_151510		4930534H03Rik	-	RIKEN cDNA 4930534H03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-121385112-4	chr5	121385008	121385208	+	955.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172275, intron 1 of 11)	intron (NM_172275, intron 1 of 11)	301.0	NM_001359947	231712.0	Mm.20488	NM_172275	ENSMUSG00000042726	Trafd1	1110008K06Rik|Fln29	TRAF type zinc finger domain containing 1	protein-coding	3.36421098751266	3.68700068891163	2.67697274966389	3.91948454620144	3.70660198204771	3.22222110599078	3.42250714874167	4.0903949917053	0.252297523808465	0.652146234086759	0.986434615290108
Merged-chr2-142694630-4	chr2	142694535	142694735	+	881.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355123, intron 23 of 26)	intron (NM_001355123, intron 23 of 26)	206829.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-35043825-1	chr9	35043725	35043925	+	1000.0	f1_balb.idr	Intergenic	MIRc|SINE|MIR	-72903.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46901564-3	chr19	46901458	46901658	+	702.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029810, intron 5 of 17)	intron (NM_029810, intron 5 of 17)	60793.0	NM_029810	76952.0	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	0.279569369646489	0.307233973275405	0.298282867570366	1.25941302721359	0.925960075749749	0.309237580480689	0.300266060220771	1.0055453560456	0.23910389218749	0.903832114802402	1
Merged-chr1-36692331-2	chr1	36692231	36692431	+	562.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009942, intron 2 of 3)	intron (NM_009942, intron 2 of 3)	844.0	NM_009942	12859.0	Mm.180182	NM_009942	ENSMUSG00000061518	Cox5b	-	cytochrome c oxidase subunit Vb	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-31804497-1	chr18	31804397	31804597	+	912.6666869999999	f0_balb.idr	intron (NM_028866, intron 1 of 21)	CpG	440.0	NM_001170966	74320.0	Mm.277705	NM_028866	ENSMUSG00000024400	Wdr33	1110001N06Rik|2310011G05Rik|2810021O11Rik|8430413N20Rik|WDC146	WD repeat domain 33	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-102068704-2	chr5	102068604	102068804	+	576.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 1 of 66)	intron (NM_172882, intron 1 of 66)	1217.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-7964571-2	chr15	7964471	7964671	+	576.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081402, intron 10 of 17)	MTC|LTR|ERVL-MaLR	134638.0	NM_001358788	545085.0	Mm.321312	NM_001081402	ENSMUSG00000039828	Wdr70	4833422F06Rik	WD repeat domain 70	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-8546454-3	chr6	8546356	8546556	+	793.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286729, intron 2 of 7)	intron (NM_001286729, intron 2 of 7)	26398.0	NM_001286729	170772.0	Mm.210787	NM_133236	ENSMUSG00000029638	Glcci1	2310047L21Rik|A130036A18Rik|Fam117c|Gig18|Tssn1	glucocorticoid induced transcript 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-137503007-2	chr5	137502905	137503105	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_028753)	promoter-TSS (NM_028753)	-576.0	NM_028753	74097.0	Mm.290242	NM_028753	ENSMUSG00000029715	Pop7	0610037N12Rik|AI852017|Rpp20	processing of precursor 7, ribonuclease P family, (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126923981-2	chr8	126923881	126924081	+	852.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21940.0	NM_024214	67952.0	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-107099336-3	chr3	107099259	107099459	+	888.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-2208.0	NM_008417	16490.0	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	2.49193961541688	2.70806008251107	2.61496136212966	1.31290149285434	2.51308376712834	2.38390591963372	2.63588996161237	1.31802659341547	-0.175505501842246	0.857701400095996	0.998431161219273
Merged-chr1-85998214-2	chr1	85998114	85998314	+	646.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23728.0	NM_001122732	70060.0	Mm.196313	NM_027029	ENSMUSG00000026226	Spata3	1700011N12Rik|1700029H01Rik|4930424D10Rik|Mtsarg1|Tsarg1	spermatogenesis associated 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-37998548-3	chr1	37998449	37998649	+	847.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198303, intron 1 of 23)	CpG	539.0	NM_198303	226982.0	Mm.260943	NM_198303	ENSMUSG00000026083	Eif5b	A030003E17Rik|BC018347|IF2	eukaryotic translation initiation factor 5B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-18212031-2	chr16	18211931	18212131	+	763.166626	f1_balb.idr|f1_c57bl6.idr	intron (NR_015575, intron 1 of 2)	intron (NR_015575, intron 1 of 2)	1502.0	NR_027843	66779.0	Mm.387525	NR_015575		4933432I09Rik	-	RIKEN cDNA 4933432I09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-61962653-2	chr9	61962553	61962753	+	649.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028748, intron 6 of 7)	intron (NM_028748, intron 6 of 7)	-15854.0	NM_024245	71819.0	Mm.259374	NM_024245	ENSMUSG00000032254	Kif23	3110001D19Rik|C87313|CHO1|Knsl5|MKLP-1|MKLP1	kinesin family member 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-75071854-4	chr8	75071864	75072064	+	967.09375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21654.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83418281-4	chr6	83418157	83418357	+	969.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347313, intron 3 of 11)	intron (NM_001347313, intron 3 of 11)	-17155.0	NR_105793	102465194.0		NR_105793	ENSMUSG00000099045	Mir6374	Gm27292|mmu-mir-6374	microRNA 6374	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-77357874-4	chr5	77357787	77357987	+	862.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008048, intron 1 of 4)	intron (NM_008048, intron 1 of 4)	47403.0	NM_153798	231329.0	Mm.273217	NM_153798	ENSMUSG00000029250	Polr2b	Pol2rb|Rpb140|Rpb2	polymerase (RNA) II (DNA directed) polypeptide B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-52141647-4	chr1	52141537	52141737	+	797.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205313, intron 11 of 24)	RLTR28|LTR|ERVL	22015.0	NM_001205313	20846.0	Mm.277406	NM_009283	ENSMUSG00000026104	Stat1	2010005J02Rik|AA408197	signal transducer and activator of transcription 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-105053962-4	chr9	105053851	105054051	+	827.445801	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053159, intron 1 of 9)	intron (NM_053159, intron 1 of 9)	683.0	NM_053159	94062.0	Mm.29746	NM_053159	ENSMUSG00000032563	Mrpl3	2010320L16Rik|5930422H18Rik|AA407889	mitochondrial ribosomal protein L3	protein-coding	2.00305450659267	1.40146833726503	1.62518676736171	2.56824521810994	2.95090875422893	2.65424762625376	2.3302357638256	2.83263395355309	1.60705909699283	0.0684258810531474	0.392434857015135
Merged-chr19-29478820-4	chr19	29478709	29478909	+	997.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43178.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25236592-2	chr7	25236492	25236692	+	599.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001031667, intron 1 of 10)	intron (NM_001031667, intron 1 of 10)	1259.0	NM_001031667	606496.0	Mm.491101	NM_001031667	ENSMUSG00000057177	Gsk3a	2700086H06Rik	glycogen synthase kinase 3 alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5494794-2	chr19	5494694	5494894	+	545.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_007687)	TTS (NM_007687)	4339.0	NM_007687	12631.0	Mm.329655	NM_007687	ENSMUSG00000056201	Cfl1	AA959946|Cof	cofilin 1, non-muscle	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-37541187-4	chr1	37541135	37541335	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173870)	promoter-TSS (NM_173870)	-219.0	NM_173870	269181.0	Mm.25861	NM_173870	ENSMUSG00000026110	Mgat4a	9530018I07Rik|GnT-IVa|glcNAc-T-IVa	mannoside acetylglucosaminyltransferase 4, isoenzyme A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-104701150-4	chr3	104701043	104701243	+	971.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	62479.0	NM_009196	20501.0	Mm.9086	NM_009196	ENSMUSG00000032902	Slc16a1	AL022710|Mct1	solute carrier family 16 (monocarboxylic acid transporters), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-109087761-2	chr9	109087661	109087861	+	639.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025689, intron 1 of 3)	intron (NM_025689, intron 1 of 3)	5265.0	NM_025689	66658.0	Mm.128227	NM_025689	ENSMUSG00000025645	Ccdc51	5730568A12Rik|AI551049	coiled-coil domain containing 51	protein-coding	-1.50408632163699	-1.47243681084455	-1.48200788414105	-1.18867649397355	-1.50186458449932	-1.47036271933452	-1.47984120293868	-1.33786588344523	-0.709784890658749	0.839804335673694	1
Merged-chr18-5986027-4	chr18	5985922	5986122	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	150076.0	NM_029277	75415.0	Mm.239675	NM_029277	ENSMUSG00000041225	Arhgap12	2810011M08Rik	Rho GTPase activating protein 12	protein-coding	4.11372021392176	4.29444357095806	4.71329214347163	4.67407676801729	4.45471514913954	3.67236823158836	4.24910924112407	4.53157850955797	-0.252346085347781	0.537683603154283	0.953963493057627
Merged-chr6-125603390-4	chr6	125603295	125603495	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011708, exon 14 of 52)	exon (NM_011708, exon 14 of 52)	50447.0	NM_011708	22371.0	Mm.22339	NM_011708	ENSMUSG00000001930	Vwf	6820430P06Rik|AI551257|B130011O06Rik|C630030D09|F8VWF|VWD	Von Willebrand factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-65189128-3	chr1	65189009	65189209	+	770.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310624, intron 1 of 41)	T-rich|Low_complexity|Low_complexity	2424.0	NM_011086	18711.0	Mm.38370	NM_011086	ENSMUSG00000025949	Pikfyve	5230400C17Rik|Pip5k|Pip5k3|Pipk5k3|PipkIII|p235	phosphoinositide kinase, FYVE type zinc finger containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-79331444-2	chr14	79331344	79331544	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29809.0	NM_025427	66214.0	Mm.29811	NM_025427	ENSMUSG00000022018	Rgcc	1190002H23Rik|Rgc-32|Rgc32	regulator of cell cycle	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-29486035-3	chr17	29485909	29486109	+	805.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-5036.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-48419269-4	chr4	48419215	48419415	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001281978, intron 15 of 18)	intron (NM_001281978, intron 15 of 18)	54148.0	NM_172304	269536.0	Mm.272025	NM_172304	ENSMUSG00000028345	Tex10	2610206N19Rik|2810462N03Rik|BC006867	testis expressed gene 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120628069-4	chr11	120627904	120628104	+	975.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010756)	TTS (NM_010756)	-3002.0	NM_153056	209011.0	Mm.292957	NM_153056	ENSMUSG00000025138	Sirt7	-	sirtuin 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-61331420-4	chr14	61331300	61331500	+	869.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21647.0	NM_177337	219144.0	Mm.206566	NM_177337	ENSMUSG00000043157	Arl11	ARLTS1|C730007L20Rik	ADP-ribosylation factor-like 11	protein-coding	2.12537059030248	1.89615564575542	1.8371367977043	2.142769793763	1.5810643844229	2.29680026977332	2.11126082214045	1.64679305842573	-0.180690814218011	0.848835784171457	0.998431161219273
Merged-chr1-154036311-2	chr1	154036211	154036411	+	764.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11A|LTR|ERVK	136382.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141671693-2	chr4	141671568	141671768	+	557.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-7553.0	NM_001033150	69582.0	Mm.33220	NM_001033150	ENSMUSG00000028917	Plekhm2	2310034J19Rik|AI854247|mKIAA0842	pleckstrin homology domain containing, family M (with RUN domain) member 2	protein-coding	0.722088298957002	0.970849914040471	0.467376652141948	0.768957802624526	0.729140193011149	0.675253765547446	0.469090258379861	1.19420681784581	0.319430845052172	0.841443601854701	1
Merged-chr10-95523074-2	chr10	95522974	95523174	+	806.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_080560, intron 1 of 3)	B3|SINE|B2	7912.0	NM_080560	93765.0	Mm.371667	NM_080560	ENSMUSG00000074781	Ube2n	1500026J17Rik|AL022654|BB101821|UBC13	ubiquitin-conjugating enzyme E2N	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115061305-2	chr11	115061205	115061405	+	954.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172050, intron 1 of 3)	intron (NM_172050, intron 1 of 3)	734.0	NM_172050	217306.0	Mm.222667	NM_172050	ENSMUSG00000048498	Cd300e	BC034097|CLM2|Cd300le|TREM5	CD300E molecule	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-98985867-4	chr15	98985774	98985974	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045991)	promoter-TSS (NR_045991)	-91.0	NR_045991	75951.0	Mm.441657	NR_045991	ENSMUSG00000097587	4930578M01Rik	3010001K12Rik	RIKEN cDNA 4930578M01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-4836991-4	chr18	4836884	4837084	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045881, intron 5 of 9)	intron (NR_045881, intron 5 of 9)	24498.0	NR_045881	100038439.0	Mm.387569	NR_045881	ENSMUSG00000097043	Gm10556	-	predicted gene 10556	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-27354226-3	chr7	27354122	27354322	+	878.06665	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138676, intron 6 of 17)	intron (NM_138676, intron 6 of 17)	1786.0	NM_138676	192192.0	Mm.21297	NM_138676	ENSMUSG00000089832	Shkbp1	B930062H15Rik|Sb1	Sh3kbp1 binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-43094768-3	chr13	43094667	43094867	+	963.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001302636, exon 7 of 13)	exon (NM_001302636, exon 7 of 13)	-28072.0	NM_001005748	218194.0	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-79824036-2	chr10	79823936	79824136	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030218, intron 1 of 4)	intron (NM_030218, intron 1 of 4)	3015.0	NM_030218	78906.0	Mm.33087	NM_030218	ENSMUSG00000035852	Misp	9130017N09Rik	mitotic spindle positioning	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-27312330-2	chr12	27312214	27312414	+	800.0	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	30404.0	NM_009234	20666.0	Mm.41702	NM_009234	ENSMUSG00000063632	Sox11	1110038H03Rik|6230403H02Rik|AI836553|end1	SRY (sex determining region Y)-box 11	protein-coding	0.927321139106853	1.30367207359458	0.991100525452686	0.967926394860841	2.10260331890732	2.39478173461619	2.63522277314404	2.22447493817725	4.94939367502568	0.000175950341890289	0.00487165892769157
Merged-chr17-64667135-2	chr17	64667035	64667235	+	668.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008549, intron 7 of 21)	intron (NM_008549, intron 7 of 21)	65486.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-32690815-2	chr5	32690715	32690915	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55527.0	NM_001347332	320951.0	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35162303-2	chr17	35162203	35162403	+	774.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_020027, exon 3 of 31)	exon (NM_020027, exon 3 of 31)	2574.0	NM_001199044	53761.0	Mm.272462	NM_020027	ENSMUSG00000024393	Prrc2a	3110039B05Rik|Bat-2|Bat2|D17H6S51E|G2|Wbp12|mKIAA4178	proline-rich coiled-coil 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-12262232-4	chr12	12262164	12262364	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146119, intron 1 of 11)	CpG	125.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-120157300-2	chr14	120157200	120157400	+	736.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-114865.0	NM_001001490	239283.0	Mm.138520	NM_001001490	ENSMUSG00000044819	Oxgr1	Cysltr3|Gm299|Gpr80|Gpr99|P2Y15	oxoglutarate (alpha-ketoglutarate) receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81370776-2	chr10	81370676	81370876	+	614.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_019757, exon 5 of 14)	exon (NM_019757, exon 5 of 14)	-4956.0	NM_001014836	432479.0	Mm.440450	NM_001014836	ENSMUSG00000020234	4930404N11Rik	2210409H10Rik|5730551K18Rik|AI854616	RIKEN cDNA 4930404N11 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-25116056-4	chr17	25115926	25116126	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163661)	promoter-TSS (NM_001163661)	-59.0	NM_001163661	71718.0	Mm.288702	NM_027880	ENSMUSG00000024170	Telo2	1200003M09Rik|AI415602|Tel2|mKIAA0683	telomere maintenance 2	protein-coding	6.35473337802953	6.10084053372755	5.67988265048083	6.03893380326791	7.9181268641832	7.5695422687801	7.22941525473477	7.67122852006586	1.64012704789322	4.92253766102538e-16	3.85177870806407e-13
Merged-chr5-135537951-4	chr5	135537866	135538066	+	869.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146001, intron 1 of 30)	MTEa|LTR|ERVL-MaLR	7156.0	NM_146001	215114.0	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165285802-4	chr2	165285716	165285916	+	970.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252575, intron 1 of 9)	intron (NM_001252575, intron 1 of 9)	1971.0	NM_001252574	228875.0	Mm.21184	NM_144893	ENSMUSG00000017664	Slc35c2	C85957|CGI-15|D2Wsu58e|Ovcov1	solute carrier family 35, member C2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-105245847-4	chr4	105245787	105245987	+	795.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	88540.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	1.20545902378524	0.63044925426272	1.57486015321467	2.05461268369347	0.584228451847208	0.889156074852883	0.856203377792	0.604488110677988	-3.3885425641999	0.032850045344534	0.253191548636222
Merged-chr1-144007540-4	chr1	144007458	144007658	+	990.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3409.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-139366744-3	chr7	139366650	139366850	+	897.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22359.0	NM_183144	212111.0	Mm.28308	NM_183144	ENSMUSG00000025477	Inpp5a	-	inositol polyphosphate-5-phosphatase A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81853767-1	chr15	81853667	81853867	+	668.0	f1_c57bl6.idr	intron (NM_020507, intron 1 of 1)	intron (NM_020507, intron 1 of 1)	4559.0	NM_020507	57259.0	Mm.323595	NM_020507	ENSMUSG00000048546	Tob2	2900090N22Rik|4930545K18Rik|AV071822|mKIAA1663	transducer of ERBB2, 2	protein-coding	0.765492648291069	1.36127657755665	0.360300597359278	0.353177358570892	0.775226046464036	0.925509899325943	0.362325378552654	0.354426384845213	-0.801745268073462	0.657821028316434	1
Merged-chr2-165900803-2	chr2	165900667	165900867	+	903.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15929.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-27017726-2	chr8	27017626	27017826	+	730.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-6073.0	NM_153592	244373.0	Mm.277699	NM_153592	ENSMUSG00000031483	Erlin2	BC036333|C87251|Spfh2	ER lipid raft associated 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19589479-4	chr7	19589369	19589569	+	802.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_125836, intron 6 of 17)	B3|SINE|B2	12182.0	NM_022409	63872.0	Mm.23310	NM_022409	ENSMUSG00000011267	Zfp296	2210018A16Rik|Znf296	zinc finger protein 296	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-64403344-1	chr7	64403244	64403444	+	652.0	f1_balb.idr	intron (NM_028626, intron 2 of 2)	intron (NM_028626, intron 2 of 2)	10722.0	NM_001355124	73724.0	Mm.10093	NM_028626	ENSMUSG00000033429	Mcee	1110007A04Rik	methylmalonyl CoA epimerase	protein-coding	-0.755998668505046	-0.746265234757744	-0.1835011411898	-0.751921800996326	-0.374998571242037	-0.745544059796034	-0.748756493287208	-0.75149213951642	-0.730804111338351	0.806793324159422	1
Merged-chr4-123342904-4	chr4	123342812	123343012	+	984.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001256019, exon 1 of 7)	5' UTR (NM_001256019, exon 1 of 7)	340.0	NM_001256019	12163.0	Mm.439749	NM_007558	ENSMUSG00000032726	Bmp8a	Bmp7r1|OP-2|OP2	bone morphogenetic protein 8a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-150922871-2	chr2	150922771	150922971	+	559.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027014, intron 4 of 6)	B1_Mur4|SINE|Alu	13277.0	NM_001163476	69270.0	Mm.271603	NM_027014	ENSMUSG00000027454	Gins1	2810418N01Rik|Gins4|PSF1|mKIAA0186	GINS complex subunit 1 (Psf1 homolog)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-20762251-4	chr11	20762175	20762375	+	905.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F3|LINE|L1	-20719.0	NM_181411	216549.0	Mm.356580	NM_181411	ENSMUSG00000049659	Aftph	-	aftiphilin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97986475-4	chr11	97986362	97986562	+	833.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028199)	promoter-TSS (NM_028199)	-16.0	NM_001163608	72324.0	Mm.39617	NM_028199	ENSMUSG00000017417	Plxdc1	2410003I07Rik|AI848450|Tem7	plexin domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-75910468-3	chr15	75910413	75910613	+	710.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285429)	promoter-TSS (NM_001285429)	778.0	NM_178646	105734.0	Mm.275583	NM_178646	ENSMUSG00000103906	Tigd5	AA409802|AA409995|AI666797	tigger transposable element derived 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-43922327-4	chr14	43922205	43922405	+	999.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_053112)	TTS (NM_053112)	1063.0	NM_053112	93725.0	Mm.429087	NM_053112	ENSMUSG00000090166	Ear10	Raf2	eosinophil-associated, ribonuclease A family, member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-164881170-1	chr2	164881070	164881270	+	791.5	f1_c57bl6.idr	intron (NM_146129, intron 1 of 16)	intron (NM_146129, intron 1 of 16)	1802.0	NM_146129	228866.0	Mm.241134	NM_146129	ENSMUSG00000039849	Pcif1	2310022K11Rik|C20orf67|F730014I05Rik	PDX1 C-terminal inhibiting factor 1	protein-coding	0.872458284138651	0.765955419998857	0.867273618124338	0.365180541500207	0.355518175475307	0.382618834643578	0.373883925339431	1.31678820954566	-0.157172783099744	0.93141704327732	1
Merged-chr3-138527168-4	chr3	138527079	138527279	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001313980)	promoter-TSS (NM_001313980)	-89.0	NM_001313980	13684.0	Mm.3941	NM_007917	ENSMUSG00000028156	Eif4e	EG668879|Eif4e-ps|If4e|eIF-4E	eukaryotic translation initiation factor 4E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-89160033-4	chr18	89159927	89160127	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37400.0	NM_178687	225825.0	Mm.139293	NM_178687	ENSMUSG00000034028	Cd226	BC051526|DNAM-1|DNAM1|Pta1|TLiSA1	CD226 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-90923502-1	chr13	90923402	90923602	+	1000.0	f1_c57bl6.idr	intron (NM_024175, intron 1 of 3)	CpG	380.0	NM_024175	66475.0	Mm.306302	NM_024175	ENSMUSG00000049517	Rps23	2410044J15Rik	ribosomal protein S23	protein-coding	4.16344826212244	2.25462059243268	4.29000001568661	4.22809917849832	4.15078032444646	4.09106038864386	4.42208180984655	4.08888915911104	0.327225014180627	0.526874643434672	0.948839578239191
Merged-chr8-106753675-3	chr8	106753575	106753775	+	897.244446	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173037, intron 14 of 17)	intron (NM_173037, intron 14 of 17)	70607.0	NM_173037	272538.0	Mm.87151	NM_173037	ENSMUSG00000041949	Tango6	AW413431|E330010G16|Tmco7	transport and golgi organization 6	protein-coding	3.19413262166431	3.05343460708965	3.46443092651718	2.85895415898169	3.97945604142474	3.91458995254623	3.97632215163621	3.20514429697666	0.995924470546414	0.0669936793687402	0.388304427568186
Merged-chr2-80045143-4	chr2	80045050	80045250	+	945.4833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355141, intron 2 of 15)	intron (NM_001355141, intron 2 of 15)	-6248.0	NM_001355142	18573.0	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-142936486-4	chr5	142936391	142936591	+	867.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23864.0	NM_007984	14086.0	Mm.289707	NM_007984	ENSMUSG00000029581	Fscn1	AI663989|Fan1|fascin-1	fascin actin-bundling protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44815955-4	chr7	44815900	44816100	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030693)	promoter-TSS (NM_030693)	-88.0	NM_053074	18226.0	Mm.2565	NM_053074	ENSMUSG00000109511	Nup62	D7Ertd649e|Nupc1|p62	nucleoporin 62	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-59875861-4	chr13	59875757	59875957	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52710.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	3.77893431999802	4.36256500513874	4.7594704273256	4.60038812001838	4.37909053232319	4.56499921293416	4.31369028965372	4.12887179461891	-0.0848861744459902	0.83461923192364	0.998431161219273
Merged-chr19-6955215-2	chr19	6955115	6955315	+	660.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008874, exon 26 of 31)	exon (NM_008874, exon 26 of 31)	12653.0	NM_001285453	12015.0	Mm.4387	NM_007522	ENSMUSG00000024959	Bad	AI325008|Bbc2	BCL2-associated agonist of cell death	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-24525280-4	chr8	24525192	24525392	+	721.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40306.0	NR_035483									1.91780301448026	2.88154052540578	1.8968300012777	2.70708609360473	2.19869465701695	2.80795257471296	1.91084608116603	2.80371474145115	0.124633716212324	0.882218539830846	0.998431161219273
Merged-chr8-105566083-4	chr8	105566001	105566201	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013477)	promoter-TSS (NM_013477)	-37.0	NM_013477	11972.0	Mm.17708	NM_013477	ENSMUSG00000013160	Atp6v0d1	AI267038|Ac39|Atp6d|P39|VATX|Vma6	ATPase, H+ transporting, lysosomal V0 subunit D1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-41162932-3	chr15	41162789	41162989	+	723.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10812.0	NR_151516	100418302.0		NR_151516		4930555K19Rik	-	leucine rich repeat and sterile alpha motif containing 1 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-16349505-4	chr19	16349418	16349618	+	905.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008139, intron 5 of 6)	L1MB3|LINE|L1	-34514.0	NR_105832	102465218.0		NR_105832	ENSMUSG00000098718	Mir496b	Gm28028|mmu-mir-496b	microRNA 496b	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-181483692-4	chr2	181483525	181483725	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9581.0	NM_183181	241850.0	Mm.87455	NM_183181	ENSMUSG00000055882	Abhd16b	1700095H12	abhydrolase domain containing 16B	protein-coding	3.20033442270054	3.40433547346096	2.95238870031117	3.37429518834676	4.35694661780594	3.61642299921543	3.21205749332221	3.68752737040486	0.848436040611325	0.123785713655781	0.551658122846446
Merged-chr17-35513326-1	chr17	35513226	35513426	+	785.0	f1_c57bl6.idr	intron (NM_025674, intron 3 of 3)	(CA)n|Simple_repeat|Simple_repeat	3498.0	NM_001163764	106795.0	Mm.11434	NM_025674	ENSMUSG00000050410	Tcf19	5730403J10Rik|AW495861	transcription factor 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-96536450-4	chr9	96536323	96536523	+	861.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-57748.0	NM_001311135	19823.0	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	1.40046595804187	1.41126742786876	1.65176998957804	0.954523048468976	2.04330639849198	0.989452192063924	1.53088031489233	1.92067383230171	1.04916977972584	0.39510376511954	0.882909751294042
Merged-chr15-97469788-2	chr15	97469688	97469888	+	775.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-222501.0	NM_001164602	105827.0	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-99455822-3	chr5	99455687	99455887	+	955.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 2 of 3)	MTC|LTR|ERVL-MaLR	-202860.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-101266007-2	chr4	101265907	101266107	+	602.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146145)	promoter-TSS (NM_146145)	-725.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-64810034-2	chr9	64809934	64810134	+	897.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162917)	promoter-TSS (NM_001162917)	-977.0	NM_001162917	102442.0	Mm.222473	NM_176935	ENSMUSG00000053641	Dennd4a	AI115600|AI851943|F730015K02Rik	DENN/MADD domain containing 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-98816395-2	chr13	98816295	98816495	+	713.166687	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172591)	promoter-TSS (NM_172591)	-946.0	NM_172591	218503.0	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-98892365-4	chr15	98892257	98892457	+	992.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007857, exon 3 of 3)	3' UTR (NM_007857, exon 3 of 3)	6183.0	NM_007857	13363.0	Mm.324688	NM_007857	ENSMUSG00000023000	Dhh	C78960	desert hedgehog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-38926732-4	chr2	38926618	38926818	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010264)	promoter-TSS (NM_010264)	-257.0	NM_010264	14536.0	Mm.439703	NM_010264	ENSMUSG00000063972	Nr6a1	1700113M01Rik|Gcnf|NCNF|RTR	nuclear receptor subfamily 6, group A, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-71003872-4	chr12	71003726	71003926	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045055, intron 3 of 3)	B2_Mm1t|SINE|B2	11997.0	NR_045056	73204.0	Mm.363770	NR_045055	ENSMUSG00000085622	3110056K07Rik	4921536K06Rik	RIKEN cDNA 3110056K07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-23581551-4	chr13	23581468	23581668	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175654)	promoter-TSS (NM_175654)	-34.0	NM_175654	319156.0	Mm.260530	NM_175654	ENSMUSG00000061482	Hist1h4d	-	histone cluster 1, H4d	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-73968342-3	chr12	73968239	73968439	+	813.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_178392, exon 3 of 10)	exon (NM_178392, exon 3 of 10)	3809.0	NM_178392	75627.0	Mm.25937	NM_178392	ENSMUSG00000021113	Snapc1	2700033G17Rik|AU015787	small nuclear RNA activating complex, polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-25015283-1	chr8	25015183	25015383	+	671.0	f1_c57bl6.idr	intron (NM_001270996, intron 1 of 21)	intron (NM_001270996, intron 1 of 21)	1639.0	NM_001270996	11502.0	Mm.28908	NM_007404	ENSMUSG00000031555	Adam9	AU020942|MDC9|Mltng|mKIAA0021	a disintegrin and metallopeptidase domain 9 (meltrin gamma)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-106429447-4	chr9	106429352	106429552	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001324534)	promoter-TSS (NM_001324534)	41.0	NM_009082	19944.0	Mm.288696	NM_009082	ENSMUSG00000048758	Rpl29	Rpl43	ribosomal protein L29	protein-coding	6.08394838564353	6.78868028889814	6.77232651108668	6.49210747789604	6.2518618756812	5.94335428411629	6.38818252545737	6.0972732631138	-0.401951509335648	0.0743867894600369	0.412173352805506
Merged-chr19-10718354-2	chr19	10718254	10718454	+	550.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007650, exon 11 of 11)	3' UTR (NM_007650, exon 11 of 11)	17586.0	NM_001361964	107305.0	Mm.19091	NM_181403	ENSMUSG00000048832	Vps37c	5730409F24Rik|AU042646	vacuolar protein sorting 37C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-80054252-4	chr15	80054151	80054351	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24328.0	NR_028282	100302601.0		NR_028282	ENSMUSG00000077734	Snord83b	MBII-10	small nucleolar RNA, C/D box 83B	snoRNA	2.02609790979588	1.14272727854645	1.35821468277534	1.93330271406304	2.13038127623427	2.0822409587758	1.12373385632737	2.47939597862066	1.00463643949847	0.374506098155898	0.86721387654551
Merged-chr17-73947433-2	chr17	73947333	73947533	+	804.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011723, intron 1 of 35)	intron (NM_011723, intron 1 of 35)	2763.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-42392105-4	chr6	42391997	42392197	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-8141.0	NM_001001452	387514.0	Mm.377921	NM_001001452	ENSMUSG00000046652	Tas2r143	Gm1404|Tas2r43|mt2r36	taste receptor, type 2, member 143	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-3228361-4	chr15	3228281	3228481	+	932.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42386.0	NM_001042613	20363.0	Mm.392203	NM_009155	ENSMUSG00000064373	Selenop	AU018766|D15Ucla1|Se-P|Sepp1|selp	selenoprotein P	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-59435037-4	chr2	59434927	59435127	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48345.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-87750203-4	chr11	87750138	87750338	+	863.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6626.0	NR_029555	387160.0		NR_029555	ENSMUSG00000105196	Mir142	Mirn142|miR-142|mir-142a|mmu-mir-142|mmu-mir-142a	microRNA 142	ncRNA	2.25156641430545	1.92789611605414	2.94854092819278	1.81917751721306	1.46790397532294	2.09213384693987	2.15120208160064	1.33026285114447	-1.50692971129942	0.140608014818801	0.585331469539392
Merged-chr9-46011600-2	chr9	46011500	46011700	+	664.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357241, intron 1 of 5)	intron (NM_001357241, intron 1 of 5)	1090.0	NM_001357241	18475.0	Mm.200859	NM_008775	ENSMUSG00000003131	Pafah1b2	2610005M20Rik|AI747451|AU021353|Pafahb|mus[b]	platelet-activating factor acetylhydrolase, isoform 1b, subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-13279189-3	chr2	13279033	13279233	+	875.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081084, intron 65 of 66)	intron (NM_001081084, intron 65 of 66)	-7718.0	NM_009105	20163.0	Mm.905	NM_009105	ENSMUSG00000026727	Rsu1	RsuI|rsp-1	Ras suppressor protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34121185-5	chr17	34121162	34121362	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001204973, intron 1 of 12)	CpG-6274	485.0	NM_010238	14312.0	Mm.3444	NM_010238	ENSMUSG00000024335	Brd2	AW228947|D17H6S113E|Frg-1|Fsrg-1|Fsrg1|Nat|Ring3|Rnf3|mKIAA4005	bromodomain containing 2	protein-coding	2.13230180748631	2.54106915434058	2.79450390926583	3.24145900426318	2.59746361917015	2.8069550182345	1.49700903068762	2.90719677272099	-0.355031430919481	0.665499632984319	0.992380258859526
Merged-chr3-83798015-4	chr3	83797916	83798116	+	951.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31695.0	NM_009144	20319.0	Mm.19155	NM_009144	ENSMUSG00000027996	Sfrp2	AI851596|Sdf5	secreted frizzled-related protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-54758177-4	chr11	54758084	54758284	+	994.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178626, intron 1 of 5)	MER57C2|LTR|ERV1	29519.0	NM_178626	72729.0	Mm.29476	NM_178626	ENSMUSG00000052298	Cdc42se2	2810404F18Rik|AA408783|AA536669|SPEC2	CDC42 small effector 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-130663792-4	chr4	130663780	130663980	+	882.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356566, intron 1 of 17)	CpG	523.0	NM_001356564	80912.0	Mm.440206	NM_030722	ENSMUSG00000028580	Pum1	AA517475|Pumm|mKIAA0099	pumilio RNA-binding family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117819359-2	chr10	117819259	117819459	+	657.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_024457, intron 5 of 7)	intron (NM_024457, intron 5 of 7)	26615.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-85804400-2	chr16	85804300	85804500	+	646.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1287.0	NM_009621	11504.0	Mm.1421	NM_009621	ENSMUSG00000022893	Adamts1	ADAM-TS1|ADAMTS|ADAMTS-1|C3-C5|METH-1|METH1	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-89575651-4	chr1	89575567	89575767	+	984.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037136, intron 1 of 16)	intron (NM_001037136, intron 1 of 16)	108225.0	NR_015540	74403.0	Mm.444291	NR_015540		4933400F21Rik	1700091C04Rik|4930565K10Rik	RIKEN cDNA 4933400F21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132215025-4	chr4	132214926	132215126	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2770.0	NM_145393	213541.0	Mm.23998	NM_145393	ENSMUSG00000040025	Ythdf2	9430020E02Rik|HGRG8|NY-REN-2	YTH domain family 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-105624402-4	chr5	105624307	105624507	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-75562.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-43662608-2	chr7	43662508	43662708	+	667.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	-2447.0	NM_031181	83382.0	Mm.157702	NM_031181	ENSMUSG00000030474	Siglece	Cd170|Siglec12|Siglec5|Siglec9|Siglecl1|mSiglec-E	sialic acid binding Ig-like lectin E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55771219-2	chr14	55771119	55771319	+	660.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_080435, intron 21 of 25)	intron (NM_080435, intron 21 of 25)	5257.0	NM_008519	16995.0	Mm.20853	NM_008519	ENSMUSG00000046908	Ltb4r1	BLT1|BLTR|Ltb4r|mBLTR	leukotriene B4 receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-148152036-4	chr4	148151977	148152177	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015797)	promoter-TSS (NM_015797)	-48.0	NM_001163706	50762.0	Mm.27445	NM_015797	ENSMUSG00000055401	Fbxo6	AA408845|FBG2|Fbs2|Fbx6b|Fbxo6b	F-box protein 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-44722216-4	chr13	44722124	44722324	+	959.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8550.0	NM_021878	16468.0	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-16228775-4	chr1	16228656	16228856	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_025303)	TTS (NM_025303)	122874.0	NM_133832	98711.0	Mm.274376	NM_133832	ENSMUSG00000025921	Rdh10	3110069K09Rik|4921506A21Rik|AI875664|AW549993|D1Ertd762e|m366Asp	retinol dehydrogenase 10 (all-trans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-60255400-2	chr14	60255300	60255500	+	620.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3921.0	NM_001362439	71844.0	Mm.258051	NM_170591	ENSMUSG00000114797	Nupl1	1700017F11Rik|Nup58|mKIAA0410	nucleoporin like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-112619965-4	chr12	112619881	112620081	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007421)	promoter-TSS (NM_007421)	-66.0	NM_007421	11565.0	Mm.3440	NM_007421	ENSMUSG00000011148	Adssl1	AI528595|Adss|Adss1	adenylosuccinate synthetase like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-137641283-2	chr5	137641183	137641383	+	690.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081962)	promoter-TSS (NM_001081962)	-190.0	NM_001081962	751865.0	Mm.200763	NM_001081962	ENSMUSG00000079165	Sap25	-	sin3 associated polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5247366-2	chr17	5247266	5247466	+	657.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 5 of 19)	intron (NM_001085355, intron 5 of 19)	171401.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-57502285-1	chr4	57502185	57502385	+	541.0	f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-65963.0	NM_001304544	677884.0	Mm.331630	NM_001304544	ENSMUSG00000089945	Pakap	AF064781|Gm20459|Palm2-Akap2|Palm2Akap2|Palm2akap2	paralemmin A kinase anchor protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-25038775-1	chr10	25038675	25038875	+	551.0	f1_c57bl6.idr	Intergenic	Intergenic	-111305.0	NM_007482	11846.0	Mm.154144	NM_007482	ENSMUSG00000019987	Arg1	AI|AI256583|Arg-1|PGIF	arginase, liver	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95228266-4	chr3	95228127	95228327	+	791.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172395)	promoter-TSS (NM_172395)	-197.0	NM_172395	57912.0	Mm.28189	NM_172395	ENSMUSG00000046722	Cdc42se1	1300002M12Rik|AW558204|Cdcse1|SCIP1|Spec1	CDC42 small effector 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-64313961-2	chr13	64313861	64314061	+	936.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1251.0	NM_025370	66129.0	Mm.491110	NM_025370	ENSMUSG00000021482	Aaed1	1110018J18Rik|AI849003	AhpC/TSA antioxidant enzyme domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99380975-4	chr7	99380882	99381082	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001362166)	promoter-TSS (NM_001362166)	-536.0	NM_001362168	233552.0	Mm.286317	NM_201352	ENSMUSG00000035314	Gdpd5	BC024955|Gde2	glycerophosphodiester phosphodiesterase domain containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135678589-2	chr5	135678489	135678689	+	883.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10556.0	NM_008898	18984.0	Mm.3863	NM_008898	ENSMUSG00000005514	Por	4933424M13Rik|CPR|CYPOR|P450R	P450 (cytochrome) oxidoreductase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91864287-4	chr16	91864211	91864411	+	871.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110275, intron 26 of 28)	intron (NM_001110275, intron 26 of 28)	67319.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-125580634-1	chr7	125580534	125580734	+	729.0	f1_balb.idr	Intergenic	IMPB_01|Satellite|Satellite	-22795.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	1.02836700362761	2.20061979695841	0.694180694443053	0.680052883493963	1.03830823570576	1.65129478122725	0.698154675955505	1.39771117931207	-0.323568974697515	0.822792544595317	0.998431161219273
Merged-chr8-25743030-3	chr8	25742943	25743143	+	965.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361595, intron 7 of 15)	B3A|SINE|B2	11237.0	NM_028102	72108.0	Mm.246875	NM_028102	ENSMUSG00000061313	Ddhd2	2010305K11Rik|SAMWD1|mKIAA0725	DDHD domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-37559530-1	chr1	37559430	37559630	+	589.0	f0_balb.idr	Intergenic	Intergenic	-18514.0	NM_173870	269181.0	Mm.25861	NM_173870	ENSMUSG00000026110	Mgat4a	9530018I07Rik|GnT-IVa|glcNAc-T-IVa	mannoside acetylglucosaminyltransferase 4, isoenzyme A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-14389455-2	chr14	14389355	14389555	+	583.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	42960.0	NM_008369	16188.0	Mm.425857	NM_008369	ENSMUSG00000068758	Il3ra	CD123|CDw123|SUT-1	interleukin 3 receptor, alpha chain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-92183848-4	chr2	92183776	92183976	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346704)	promoter-TSS (NM_001346704)	-306.0	NM_138755	192285.0	Mm.330408	NM_138755	ENSMUSG00000058318	Phf21a	80kDa|Bhc|Bhc80|D030065N23Rik|PFTF1	PHD finger protein 21A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-32085760-4	chr5	32085670	32085870	+	919.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50702.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32498073-2	chr2	32497973	32498173	+	731.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-37286.0	NM_153560	98952.0	Mm.4065	NM_153560	ENSMUSG00000039157	Fam102a	AI426465|C230093N12Rik|Eeig1	family with sequence similarity 102, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-106317131-4	chr1	106317021	106317221	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133821, intron 3 of 16)	intron (NM_133821, intron 3 of 16)	145252.0	NM_133821	98432.0	Mm.24115	NM_133821	ENSMUSG00000044340	Phlpp1	AI836256|Phlpp|Plekhe1|SCOP|mKIAA0606	PH domain and leucine rich repeat protein phosphatase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-88518317-4	chr5	88518214	88518414	+	761.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	9583.0	NM_152839	16069.0	Mm.1192	NM_152839	ENSMUSG00000067149	Jchain	9530090F24Rik|AI323815|Igj|Jch	immunoglobulin joining chain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34039061-2	chr17	34038961	34039161	+	544.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001317722)	promoter-TSS (NM_001317722)	-77.0	NM_009926	12815.0	Mm.20230	NM_009926	ENSMUSG00000024330	Col11a2	-	collagen, type XI, alpha 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-23983284-4	chr1	23983188	23983388	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	22352.0	NM_026503	68002.0	Mm.250424	NM_026503	ENSMUSG00000026154	Sdhaf4	1110058L19Rik|1700001E18Rik|C6orf57	succinate dehydrogenase complex assembly factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-26238113-3	chr2	26238016	26238216	+	633.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302956)	promoter-TSS (NM_001302956)	-717.0	NM_001302956	227638.0	Mm.116769	NM_153559	ENSMUSG00000036327	Qsox2	BC030934|Qscn6l1|Soxn	quiescin Q6 sulfhydryl oxidase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-48232704-4	chr17	48232607	48232807	+	966.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021406)	promoter-TSS (NM_021406)	-32.0	NM_001347399	58217.0	Mm.248352	NM_021406	ENSMUSG00000042265	Trem1	-	triggering receptor expressed on myeloid cells 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-115316550-2	chr10	115316450	115316650	+	782.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024454)	promoter-TSS (NM_024454)	-959.0	NM_024454	216344.0	Mm.21936	NM_024454	ENSMUSG00000020132	Rab21	9630024B22	RAB21, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-156461280-2	chr1	156461244	156461444	+	834.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_009230, intron 2 of 15)	intron (NM_009230, intron 2 of 15)	12984.0	NM_009230	20652.0	Mm.28099	NM_009230	ENSMUSG00000026600	Soat1	8430426K15Rik|ACAT-1|AW550831|Acact|ald|hid	sterol O-acyltransferase 1	protein-coding	2.0562120121618	1.71764269976127	1.1361672762163	0.873398047795618	2.48740053987555	1.18290664949729	1.14472994900355	1.11104138632141	0.336585863343253	0.78859350417523	0.998431161219273
Merged-chr13-114834813-4	chr13	114834711	114834911	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008396, exon 30 of 30)	3' UTR (NM_008396, exon 30 of 30)	16574.0	NM_001113374	17434.0	Mm.19027	NM_013826	ENSMUSG00000015536	Mocs2	AI415403	molybdenum cofactor synthesis 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-68434895-2	chr11	68434795	68434995	+	873.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177320, intron 1 of 18)	intron (NM_177320, intron 1 of 18)	2770.0	NM_177320	320207.0	Mm.244960	NM_177320	ENSMUSG00000020901	Pik3r5	AV230647|F730038I15Rik|Foap2|p101	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-88264896-4	chr7	88264802	88265002	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14_RN|LTR|ERV1	-13183.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-80693198-2	chr18	80693098	80693298	+	684.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198429, intron 2 of 9)	intron (NM_198429, intron 2 of 9)	14975.0	NM_001164111	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-167335908-2	chr1	167335808	167336008	+	646.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-14083.0	NM_019993	56752.0	Mm.292539	NM_019993	ENSMUSG00000026687	Aldh9a1	AA139417|Abaldh|ESTM40|TMABA-DH|Tmabadh	aldehyde dehydrogenase 9, subfamily A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-74828563-4	chr11	74828484	74828684	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2340.0	NM_010813	17428.0	Mm.3759	NM_010813	ENSMUSG00000000282	Mnt	Rox|bHLHd3	max binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129789738-4	chr4	129789649	129789849	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30730.0	NM_008974	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	3.25265173815267	2.58031795983914	1.87106869378788	3.78221534376268	2.88468204847012	3.74093751671883	2.12767597171772	3.85072419625236	0.405063756749608	0.589562266034042	0.968907675192219
Merged-chr5-124114206-2	chr5	124114106	124114306	+	629.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347478, intron 5 of 6)	intron (NM_001347478, intron 5 of 6)	1885.0	NM_001347478	66627.0	Mm.7050	NM_025671	ENSMUSG00000023707	Ogfod2	1300006G11Rik|5730405M13Rik|AU041636|AW552395	2-oxoglutarate and iron-dependent oxygenase domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10052877-2	chr19	10052777	10052977	+	582.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_021890, exon 3 of 12)	exon (NM_021890, exon 3 of 12)	11329.0	NM_021890	60527.0	Mm.253875	NM_021890	ENSMUSG00000024664	Fads3	AI464531	fatty acid desaturase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-65389099-2	chr14	65388999	65389199	+	686.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_199029, intron 4 of 9)	intron (NM_199029, intron 4 of 9)	30423.0	NM_199029	380912.0	Mm.270087	NM_199029	ENSMUSG00000034522	Zfp395	BC053701|Gm910	zinc finger protein 395	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69034907-2	chr11	69034807	69035007	+	631.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001013256, exon 20 of 23)	exon (NM_001013256, exon 20 of 23)	-10730.0	NM_011496	20877.0	Mm.3488	NM_011496	ENSMUSG00000020897	Aurkb	AIM-1|AIRK2|AL022959|Aik2|Aim1|Ark2|AurB|IPL1|STK-1|Stk12|Stk5	aurora kinase B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119390478-4	chr11	119390368	119390568	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_035453)	promoter-TSS (NR_035453)	-4.0	NR_035453	100316690.0		NR_035453	ENSMUSG00000088015	Mir1932	mir-1932|mmu-mir-1932	microRNA 1932	ncRNA	3.35542234878355	3.60485934101072	2.83321044296248	3.24329839275227	3.6061642838657	3.29144739790773	2.21283017558576	2.88245698679331	-0.29948768653528	0.641198637078229	0.982599433509505
Merged-chr7-99151564-4	chr7	99151434	99151634	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10390.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-95117778-4	chr6	95117693	95117893	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001102670)	promoter-TSS (NM_001102670)	-87.0	NM_001008785	243574.0	Mm.333275	NM_001008785	ENSMUSG00000030031	Kbtbd8	AU040152|SSEC-51|SSEC51|Takrp|mKIAA1842	kelch repeat and BTB (POZ) domain containing 8	protein-coding	6.16115390101446	6.54042115256897	6.69496856028867	6.38344693307076	5.29373125630826	5.46944547013342	6.07088067260092	5.72541623850633	-0.863361488699467	0.00044197757400581	0.0100942517758662
Merged-chr10-128589757-4	chr10	128589651	128589851	+	893.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010153)	promoter-TSS (NM_010153)	-250.0	NM_010153	13867.0	Mm.373043	NM_010153	ENSMUSG00000018166	Erbb3	C76256|Erbb-3|Erbb3r|Her3	erb-b2 receptor tyrosine kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-111731975-3	chr9	111731874	111732074	+	763.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41626.0	NM_001324546	20840.0	Mm.1414	NM_016853	ENSMUSG00000032502	Stac	-	src homology three (SH3) and cysteine rich domain	protein-coding	1.6204160286169	1.28251073699838	1.54528124379252	1.48569503382986	2.18069881257094	4.15298032885681	3.93369905233939	3.44848960799275	4.34977510337611	6.92593187791591e-06	0.000339634866503686
Merged-chr3-148202394-4	chr3	148202308	148202508	+	984.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1E2|LTR|ERVL-MaLR	752227.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-37689277-2	chr19	37689177	37689377	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001105201, intron 4 of 5)	intron (NM_001105201, intron 4 of 5)	3597.0	NM_001105201	546726.0	Mm.457750	NM_001105201	ENSMUSG00000062432	Cyp26c1	EG546726	cytochrome P450, family 26, subfamily c, polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-103388722-4	chr15	103388604	103388804	+	743.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21913.0	NM_001314041	16402.0	Mm.16234	NM_010577	ENSMUSG00000000555	Itga5	Cd49e|Fnra|VLA5	integrin alpha 5 (fibronectin receptor alpha)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135829198-4	chr4	135829039	135829239	+	967.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-26932.0	NM_001284196	14105.0	Mm.10229	NM_010178	ENSMUSG00000028676	Srsf10	FUSIP2|Fusip1|NSSR1|NSSR2|Nssr|SRrp40|Sfrs13a|Srsf13a|TASR|TASR1|TASR2	serine/arginine-rich splicing factor 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-76927704-2	chr18	76927604	76927804	+	710.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-2323.0	NM_025409	66191.0	Mm.28593	NM_025409	ENSMUSG00000090000	Ier3ip1	1110057H19Rik|AI644142|AL022842|AL022863|AV026606	immediate early response 3 interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-25855451-4	chr14	25855445	25855645	+	886.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013469, intron 1 of 14)	intron (NM_013469, intron 1 of 14)	13390.0	NM_013469	11744.0	Mm.294083	NM_013469	ENSMUSG00000021866	Anxa11	A830099O17Rik|Anx11	annexin A11	protein-coding	0.997532720652243	2.22006927284399	1.25841473328526	1.62093672306408	1.43066781338407	0.864795686025761	0.847242429472341	1.51319080911244	-1.38778664018847	0.286957265184368	0.792081273239734
Merged-chr13-42077179-4	chr13	42077085	42077285	+	977.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007772, intron 2 of 8)	ORR1D2|LTR|ERVL-MaLR	25164.0	NM_007772	110521.0	Mm.4808	NM_007772	ENSMUSG00000021366	Hivep1	Cryabp1	human immunodeficiency virus type I enhancer binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-121141351-2	chr2	121141251	121141451	+	677.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177846)	promoter-TSS (NM_177846)	-653.0	NM_177846	329504.0	Mm.219449	NM_177846	ENSMUSG00000074890	Lcmt2	D330024M17|Tyw4	leucine carboxyl methyltransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-72379163-4	chr4	72379052	72379252	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	177908.0	NR_027923	68285.0	Mm.37541	NR_027923		C630043F03Rik	AI851307	RIKEN cDNA C630043F03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-110038079-4	chr9	110037994	110038194	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205332, intron 8 of 17)	intron (NM_001205332, intron 8 of 17)	-13927.0	NM_001311163	17758.0	Mm.217318	NM_008633	ENSMUSG00000032479	Map4	AA407148|MAP-4|Mtap-4|Mtap4	microtubule-associated protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80259191-2	chr10	80259091	80259291	+	801.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001347119, exon 4 of 6)	exon (NM_001347119, exon 4 of 6)	1821.0	NM_001347119	14431.0	Mm.7329	NM_010255	ENSMUSG00000020150	Gamt	AA571402|Spintz1	guanidinoacetate methyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-104032962-2	chr5	104032862	104033062	+	842.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11166.0	NM_053262	114664.0	Mm.46019	NM_053262	ENSMUSG00000029311	Hsd17b11	Dhrs8|Pan1b|SDR2|retSDR2	hydroxysteroid (17-beta) dehydrogenase 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117259878-2	chr8	117259778	117259978	+	786.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	2859.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-45665063-4	chr14	45665034	45665234	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-6991.0	NM_001042719	114874.0	Mm.121918	NM_176845	ENSMUSG00000037697	Ddhd1	Mir5131|PA-PLA1	DDHD domain containing 1	protein-coding	6.51717428487827	5.96205593151483	5.69587458719045	6.14073633158307	6.05927192469725	5.8447657105613	6.31663035986814	6.26349138668962	0.0162216641440451	0.946987039101655	0.998431161219273
Merged-chr14-30621621-2	chr14	30621521	30621721	+	675.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011103, intron 1 of 17)	intron (NM_011103, intron 1 of 17)	4587.0	NM_011103	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-92435277-4	chr5	92435175	92435375	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183392)	promoter-TSS (NM_183392)	-76.0	NM_183392	269113.0	Mm.275289	NM_183392	ENSMUSG00000034826	Nup54	3110079L04Rik|54kDa	nucleoporin 54	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-107080389-4	chr4	107080304	107080504	+	811.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346552, intron 5 of 6)	intron (NM_001346552, intron 5 of 6)	13416.0	NM_175471	230582.0	Mm.44608	NM_175471	ENSMUSG00000028621	Cyb5rl	2810410C14Rik	cytochrome b5 reductase-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-120024786-3	chr6	120024695	120024895	+	671.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198703, intron 1 of 27)	intron (NM_198703, intron 1 of 27)	9516.0	NR_030487	735290.0		NR_030487	ENSMUSG00000076217	Mir706	Mirn706|mir-706|mmu-mir-706	microRNA 706	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-106165567-4	chr8	106165478	106165678	+	925.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_133792)	TTS (NM_133792)	-3276.0	NR_151676	330836.0	Mm.46749	NM_178798	ENSMUSG00000031904	Slc7a6	AI643885|LAT-2|LAT3|y+LAT-2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-49928844-2	chr16	49928744	49928944	+	661.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26986.0	NR_153658	100503490.0	Mm.72499	NR_153658		Gm19723	-	predicted gene, 19723	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-96011290-4	chr13	96011129	96011329	+	924.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029210, intron 4 of 12)	intron (NM_029210, intron 4 of 12)	-119307.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	-0.039404600519146	-0.381815631326858	0.153642541043674	-0.38828647916175	-0.136088176806746	-0.380988442934182	-0.384669265680244	-0.387796030615726	-1.81532921590481	0.479897089659547	1
Merged-chr2-155093612-3	chr2	155093505	155093705	+	614.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14|LTR|ERV1	6474.0	NR_040634	100504268.0	Mm.410858	NR_040634	ENSMUSG00000087254	2310005A03Rik	-	RIKEN cDNA 2310005A03 gene	ncRNA	0.624985783872398	0.364839294619775	0.701938438005297	0.673408218931544	0.341819249116424	0.746435142021408	1.25808290156801	0.351727976536949	0.811262468470911	0.640436833219064	1
Merged-chr13-9847661-2	chr13	9847561	9847761	+	873.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-82340.0	NM_144516	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-86787992-2	chr17	86787881	86788081	+	746.75	f0_balb.idr|f1_balb.idr	intron (NM_010137, intron 1 of 15)	intron (NM_010137, intron 1 of 15)	34117.0	NM_010137	13819.0	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	1.20298095249926	1.48639807734636	1.1252717154184	1.62119588092626	1.79489781949576	1.3434978454225	0.928230673021782	1.52286487128781	0.258045453128095	0.834421301912399	0.998431161219273
Merged-chr16-84192403-2	chr16	84192303	84192503	+	900.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-178740.0	NR_040567	75247.0	Mm.417813	NR_040567		4930553E22Rik	-	RIKEN cDNA 4930553E22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-103915891-3	chr13	103915788	103915988	+	834.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005868, intron 1 of 26)	intron (NM_001005868, intron 1 of 26)	4698.0	NM_001289473	59079.0	Mm.277354	NM_021563	ENSMUSG00000021709	Erbin	1700028E05Rik|Erbb2ip|mKIAA1225	Erbb2 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-31240846-4	chr5	31240754	31240954	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347326)	promoter-TSS (NM_001347326)	-29.0	NM_001347326	192292.0	Mm.292040	NM_147201	ENSMUSG00000029148	Nrbp1	B230344L17Rik|Nrbp	nuclear receptor binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-59578451-3	chr9	59578365	59578565	+	931.944458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175235, exon 1 of 12)	exon (NM_175235, exon 1 of 12)	128.0	NM_175235	76183.0	Mm.265415	NM_175235	ENSMUSG00000032297	Celf6	6330569O16Rik|Brunol6	CUGBP, Elav-like family member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-97600938-2	chr3	97600838	97601038	+	687.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026539, intron 5 of 22)	(CAGAGA)n|Simple_repeat|Simple_repeat	9252.0	NM_026539	68058.0	Mm.31761	NM_026539	ENSMUSG00000028089	Chd1l	4432404A22Rik|Alc1|Snf2p	chromodomain helicase DNA binding protein 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-7626968-4	chr18	7626839	7627039	+	976.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161620)	promoter-TSS (NM_001161620)	-76.0	NM_001161620	75739.0	Mm.133293	NM_001081287	ENSMUSG00000057440	Mpp7	1110068J02Rik|2810038M04Rik|5430426E14Rik|AI415104|Gm955	membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)	protein-coding	4.32113243035315	3.37307189878718	4.68048346293804	4.66206657733146	3.26966178356791	2.03279488962436	1.6430063392479	3.1672753423415	-2.38970602345418	0.000173678821457219	0.00481617526928438
Merged-chr7-64286696-3	chr7	64286520	64286720	+	773.133362	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-1050.0	NM_172742	233315.0	Mm.214959	NM_172742	ENSMUSG00000030522	Mtmr10	BB128963|C79734	myotubularin related protein 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-59166773-2	chr2	59166673	59166873	+	725.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 1 of 20)	B1_Mur2|SINE|Alu	5923.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-12556487-4	chr19	12556388	12556588	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17022.0	NM_001346545	107373.0	Mm.1643	NM_026640	ENSMUSG00000024691	Fam111a	4632417K18Rik|AW413625	family with sequence similarity 111, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-121205891-2	chr5	121205791	121205991	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011290, intron 3 of 6)	intron (NM_011290, intron 3 of 6)	1390.0	NM_011290	19988.0	Mm.262021	NM_011290	ENSMUSG00000029614	Rpl6	Taxreb107	ribosomal protein L6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117807684-6	chr10	117807579	117807779	+	895.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	-14974.0	NM_134010	103468.0	Mm.12568	NM_134010	ENSMUSG00000052798	Nup107	AW541137|C76801	nucleoporin 107	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166560099-2	chr2	166559999	166560199	+	582.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4423.0	NR_152154	433503.0	Mm.491336	NR_152154		Gm29679	-	predicted gene, 29679	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-176933428-4	chr1	176933339	176933539	+	943.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357390, intron 14 of 18)	intron (NM_001357390, intron 14 of 18)	-97306.0	NR_037996	15365.0	Mm.441435	NR_037996		Hmga2-ps1	EG666235|Gm7996|Hmgic-ps1|[y]i-c	high mobility group AT-hook 2, pseudogene 1	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-21046421-4	chr11	21046335	21046535	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44889.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-38659114-4	chr13	38659008	38659208	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025380)	promoter-TSS (NM_025380)	-80.0	NM_025380	66143.0	Mm.490319	NM_025380	ENSMUSG00000001707	Eef1e1	1110003A02Rik	eukaryotic translation elongation factor 1 epsilon 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-88597822-2	chr17	88597722	88597922	+	722.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28733.0	NM_029858	77057.0	Mm.482203	NM_029858	ENSMUSG00000033855	Ston1	4921524J06Rik|C86231|Salf|Sblf	stonin 1	protein-coding	1.25463419542148	0.839607854964839	1.81715849763036	1.66555814283737	0.795115319444577	0.842997417264099	1.38103548440429	1.67559846872394	-0.770007542284251	0.583779000058787	0.966605096441162
Merged-chr19-46334221-2	chr19	46334121	46334321	+	822.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164291, intron 1 of 8)	intron (NM_001164291, intron 1 of 8)	4439.0	NM_001164294	67116.0	Mm.218848	NM_024192	ENSMUSG00000036748	Cuedc2	3010002G01Rik	CUE domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126551140-4	chr8	126551019	126551219	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42317.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-134098981-2	chr5	134098881	134099081	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030719)	promoter-TSS (NM_030719)	-767.0	NM_030719	80909.0	Mm.45218	NM_030719	ENSMUSG00000015944	Gatsl2	7530428J21Rik|AW742413|Castor2|Gats|Gatsl1	GATS protein-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-86748517-4	chr4	86748410	86748610	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_184088)	promoter-TSS (NM_184088)	-45.0	NM_184088	329877.0	Mm.273718	NM_184088	ENSMUSG00000038024	Dennd4c	1700065A05Rik|AA420392	DENN/MADD domain containing 4C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129593377-4	chr2	129593292	129593492	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001291021, exon 1 of 6)	5' UTR (NM_001291021, exon 1 of 6)	223.0	NM_001291022	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	4.54486859655838	5.25251497011877	3.64443443862549	4.55999404343342	4.68812383069101	5.28535121585147	3.76983040297134	4.74942008796405	0.13669688206252	0.758765500341389	0.998431161219273
Merged-chr5-135720635-2	chr5	135720535	135720735	+	958.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008898, intron 2 of 15)	intron (NM_008898, intron 2 of 15)	15254.0	NR_106001	102466791.0		NR_106001	ENSMUSG00000099197	Mir7034	Gm27372|mmu-mir-7034	microRNA 7034	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31182371-2	chr14	31182271	31182471	+	997.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001347583)	TTS (NM_001347583)	-13730.0	NM_138672	192187.0	Mm.220821	NM_138672	ENSMUSG00000042286	Stab1	FEEL-1|FELE-1|MFEEL-1|MS-1|STAB-1|mKIAA0246	stabilin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-85657842-4	chr15	85657723	85657923	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45950.0	NR_110483	102800312.0	Mm.33117	NR_110483		Lncppara	Lincppara|Mirlet7bhg|linc-Ppara	long noncoding RNA near Ppara	ncRNA	0.0127169426992635	0.669179729393344	0.0254236896985943	0.0206596821700865	0.0139012726746103	0.680660653786243	0.0267828691511727	0.471667575299214	0.741930345647377	0.737283462962196	1
Merged-chr13-99057408-2	chr13	99057308	99057508	+	844.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30513.0	NR_045495	69603.0	Mm.390632	NR_045495	ENSMUSG00000100410	2310020H05Rik	-	RIKEN cDNA 2310020H05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-86438172-2	chr1	86438072	86438272	+	830.950012	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER5A1|DNA|hAT-Charlie	11843.0	NM_027966	71863.0	Mm.179627	NM_027966	ENSMUSG00000036574	Tex44	1700019O17Rik	testis expressed 44	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-114199275-3	chr2	114199177	114199377	+	771.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175466, intron 1 of 1)	intron (NM_175466, intron 1 of 1)	2155.0	NM_175466	228491.0	Mm.132523	NM_175466	ENSMUSG00000040321	Zfp770	6430601A21Rik|Znf770	zinc finger protein 770	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-81135725-4	chr13	81135647	81135847	+	852.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 87 of 89)	intron (NM_054053, intron 87 of 89)	171673.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-21136417-2	chr14	21136317	21136517	+	606.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134079, intron 3 of 10)	B4A|SINE|B4	60265.0	NM_001243041	11534.0	Mm.188734	NM_134079	ENSMUSG00000039197	Adk	2310026J05Rik|5033405D03Rik|AI255373|AI987814|Ak	adenosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-101786134-3	chr5	101786026	101786226	+	721.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173370, intron 2 of 12)	intron (NM_173370, intron 2 of 12)	20996.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19071710-2	chr7	19071610	19071810	+	600.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_031255, intron 5 of 5)	B2_Mm2|SINE|B2	-4490.0	NM_010058	13401.0	Mm.2852	NM_010058	ENSMUSG00000030410	Dmwd	DMR-N9|Dm9	dystrophia myotonica-containing WD repeat motif	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-20590380-2	chr8	20590277	20590477	+	676.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24550.0	NM_001270553	100861668.0	Mm.491087	NM_001270553	ENSMUSG00000095294	Gm21119	-	predicted gene, 21119	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56031136-4	chr17	56031027	56031227	+	999.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013664, intron 1 of 9)	intron (NM_013664, intron 1 of 9)	5510.0	NM_013664	20405.0	Mm.1773	NM_013664	ENSMUSG00000003200	Sh3gl1	C77078|EEN|SH3P8|Sh3d2b	SH3-domain GRB2-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-93236384-4	chr1	93236249	93236449	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172463, intron 1 of 30)	CpG	452.0	NM_172463	208777.0	Mm.271897	NM_172463	ENSMUSG00000047793	Sned1	6720455I24Rik|AI197264|AI642697|D430044C15Rik|SST3|Snep	sushi, nidogen and EGF-like domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-112810515-3	chr13	112810413	112810613	+	860.966675	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008903, intron 1 of 5)	MIR|SINE|MIR	9736.0	NM_008247	19012.0	Mm.291029	NM_008247	ENSMUSG00000021759	Plpp1	Hic53|Hpic53|LPP-1|LPP1|PAP-2a|PAP2-alpha|PAP2a|Ppap2a|mPAP	phospholipid phosphatase 1	protein-coding	1.43603648840244	0.601758585951159	0.594510937332981	0.588948189612863	1.21737041494391	0.603398080072969	1.25728029160088	0.747564507215113	0.478538071430231	0.782763353593251	0.998431161219273
Merged-chr11-116618548-3	chr11	116618448	116618648	+	794.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172572, intron 1 of 18)	intron (NM_172572, intron 1 of 18)	5704.0	NM_001167680	217344.0	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-115529129-1	chr6	115529029	115529229	+	552.0	f1_c57bl6.idr	Intergenic	Intergenic	-15575.0	NM_199033	381802.0	Mm.291208	NM_199033	ENSMUSG00000042389	Tsen2	AU067695	tRNA splicing endonuclease subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-12467145-2	chr19	12467045	12467245	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172442, exon 9 of 9)	3' UTR (NM_172442, exon 9 of 9)	6366.0	NM_010821	17476.0	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	-0.511764310400118	0.253062731976284	-0.502962335140675	-0.0601827624401947	-0.510945381801667	-0.497726744565829	-0.502018919537539	-0.505688655566991	-3.55649862520877	0.183542313126438	1
Merged-chr11-116283255-2	chr11	116283155	116283355	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_010254, exon 2 of 2)	exon (NM_010254, exon 2 of 2)	2316.0	NM_010254	14428.0	Mm.57149	NM_010254	ENSMUSG00000020793	Galr2	mGalR	galanin receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-31079796-4	chr6	31079675	31079875	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16682.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91063330-2	chr2	91063230	91063430	+	649.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_026721, exon 8 of 10)	exon (NM_026721, exon 8 of 10)	6985.0	NM_026721	68427.0	Mm.192375	NM_026721	ENSMUSG00000002105	Slc39a13	1100001L14Rik|AA387663|ZIP-13|ZIP13	solute carrier family 39 (metal ion transporter), member 13	protein-coding	-1.27480050717774	-0.604729833679879	-1.25573295904267	-1.26493563944758	-1.27428069156472	-1.24210192204986	-1.25319678955844	-1.26328836405502	-2.6632876257018	0.439827081912762	1
Merged-chr5-141081088-4	chr5	141080972	141081172	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-80476.0	NM_175362	108723.0	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-32762650-4	chr19	32762528	32762728	+	884.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008960, intron 1 of 8)	intron (NM_008960, intron 1 of 8)	5051.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6877038-3	chr19	6876938	6877138	+	889.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR19|LTR|ERVK	-18827.0	NM_001081291	78317.0	Mm.329596	NM_198008	ENSMUSG00000047810	Ccdc88b	2610041P08Rik|Ccdc88	coiled-coil domain containing 88B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-55803751-3	chr16	55803653	55803853	+	883.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18385.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-5821563-4	chr18	5821475	5821675	+	982.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	228928.0	NM_001360981	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-33235555-1	chr4	33235455	33235655	+	548.0	f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	13232.0	NM_001033225	108767.0	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-23804986-2	chr18	23804920	23805120	+	876.5	f0_balb.idr|f1_c57bl6.idr	intron (NM_153058, intron 1 of 6)	intron (NM_153058, intron 1 of 6)	1050.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	1.65872878387444	1.61242185811265	0.775304070926124	1.6839389740593	0.925395539069374	1.02059085353227	1.16637947234598	0.766573504103408	-2.20497756938051	0.115835508420776	0.533032893134419
Merged-chr12-112672036-3	chr12	112671933	112672133	+	942.888855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001331107, intron 1 of 13)	intron (NM_001331107, intron 1 of 13)	2243.0	NM_001165894	11651.0	Mm.6645	NM_009652	ENSMUSG00000001729	Akt1	Akt|LTR-akt|PKB|PKB/Akt|PKBalpha|Rac	thymoma viral proto-oncogene 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-46957983-1	chr7	46957883	46958083	+	720.666687	f0_balb.idr	intron (NM_001040695, intron 1 of 11)	intron (NM_001040695, intron 1 of 11)	535.0	NM_001040695	54122.0	Mm.1999	NM_016855	ENSMUSG00000043262	Uevld	8430408E05Rik|Attp	UEV and lactate/malate dehyrogenase domains	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-113511067-2	chr13	113510967	113511167	+	607.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8223.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133602200-2	chr4	133602100	133602300	+	832.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018754)	promoter-TSS (NM_018754)	-32.0	NM_018754	55948.0	Mm.44482	NM_018754	ENSMUSG00000047281	Sfn	Er|Mme1|Ywhas	stratifin	protein-coding	-0.345286948408909	-0.581671394157852	-0.584724755528566	-0.587067347921451	-0.144151612119853	-0.580980476124185	-0.584052965832099	-0.301294537079744	1.53099439791164	0.573260256757306	1
Merged-chr16-22362177-2	chr16	22362077	22362277	+	856.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1-int|LTR|ERVL-MaLR	67189.0	NR_153764	100043507.0		NR_153764		Gng5-ps	Gm15776	G protein subunit gamma 5, pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-44105459-4	chr14	44105329	44105529	+	950.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTRIS4|LTR|ERV1	2542.0	NM_017388	53876.0	Mm.327386	NM_017388		Ear3	Rnase3|mR3	eosinophil-associated, ribonuclease A family, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32605733-2	chr2	32605633	32605833	+	592.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025311, intron 1 of 4)	intron (NM_001025311, intron 1 of 4)	-1252.0	NM_001289547	50935.0	Mm.88831	NM_016973	ENSMUSG00000026811	St6galnac6	ST6GalNAcVI|Siat7f	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-148408237-4	chr2	148408099	148408299	+	984.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009378)	promoter-TSS (NM_009378)	-11.0	NM_009378	21824.0	Mm.24096	NM_009378	ENSMUSG00000074743	Thbd	AI385582|CD141|TM	thrombomodulin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70785531-4	chr14	70785434	70785634	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11153.0	NM_010071	13449.0	Mm.243323	NM_010071	ENSMUSG00000022102	Dok2	DokR|Frip|dok-R	docking protein 2	protein-coding	-1.5061220274826	-1.47360709383584	-1.48343987814663	-1.49151681994238	-1.50383953926072	-1.47147628845725	-1.0170701920923	-1.49007105122263	2.15652851593596	0.535359572134045	1
Merged-chr18-84809165-4	chr18	84809072	84809272	+	874.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42166.0	NM_025797	109672.0	Mm.31018	NM_025797	ENSMUSG00000024646	Cyb5a	0610009N12Rik|Cyb5	cytochrome b5 type A (microsomal)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134245089-1	chr6	134244989	134245189	+	912.0	f1_balb.idr	intron (NM_001303102, intron 5 of 8)	intron (NM_001303102, intron 5 of 8)	-151240.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	2.74279830609496	2.51163754533327	2.19825214152086	1.25162786564196	2.57371995136519	2.29453015493197	1.54146110897073	1.70003798592308	-0.438794561599255	0.658887779132634	0.989156102857025
Merged-chr18-58511104-2	chr18	58511004	58511204	+	662.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MMAR1|DNA|TcMar-Mariner	-45136.0	NM_001081072	225579.0	Mm.258517	NM_001081072	ENSMUSG00000024600	Slc27a6	4732438L20Rik|FACVL2|FATP6|VLCS-H1	solute carrier family 27 (fatty acid transporter), member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-86578049-1	chr11	86577949	86578149	+	573.0	f0_c57.idr	Intergenic	Intergenic	6109.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-39108270-1	chr8	39108170	39108370	+	742.0	f1_balb.idr	intron (NM_001357306, intron 6 of 10)	intron (NM_001357306, intron 6 of 10)	102425.0	NM_001357306	80286.0	Mm.272722	NM_030254	ENSMUSG00000039530	Tusc3	AU022242|BC003311|N33	tumor suppressor candidate 3	protein-coding	1.11698621417138	1.26280880009518	0.744370758333826	1.29085929946746	1.22911751009447	0.756730855653603	1.22659840739278	1.18602832209046	-0.0303350479328055	0.982734870290326	0.998431161219273
Merged-chr13-8646028-3	chr13	8645995	8646195	+	904.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110345, intron 3 of 10)	L1_Mus3|LINE|L1	224949.0	NM_001039389	207615.0	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180343649-2	chr1	180343549	180343749	+	693.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081175, intron 2 of 7)	intron (NM_001081175, intron 2 of 7)	-13100.0	NR_003623	277333.0	Mm.389223	NM_199472		Gm5069	EG277333	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-76759345-2	chr13	76759251	76759451	+	652.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030174, intron 7 of 20)	intron (NM_030174, intron 7 of 20)	374390.0	NM_030174	78771.0	Mm.316249	NM_030174	ENSMUSG00000021596	Mctp1	2810465F10Rik	multiple C2 domains, transmembrane 1	protein-coding	1.18236327932273	0.221318812331024	0.711203062216385	0.207327245411719	0.824784100906119	0.223083860662844	0.215189530126344	0.208399543532229	-1.39677182296198	0.495277842212644	1
Merged-chr2-91002297-3	chr2	91002202	91002402	+	913.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198683, intron 4 of 13)	intron (NM_198683, intron 4 of 13)	-33325.0	NM_009023	19400.0	Mm.1272	NM_009023	ENSMUSG00000002104	Rapsn	43kDa|Nraps|Raps|rapsyn	receptor-associated protein of the synapse	protein-coding	0.0954054181031878	0.115159546727004	0.108714379839903	0.103724513408648	0.773610788390341	0.116609050471746	0.814793053065733	0.552393489802325	4.19355113579833	0.0444323949232532	1
Merged-chr1-138152959-2	chr1	138152859	138153059	+	849.400024	f1_balb.idr|f1_c57bl6.idr	intron (NM_001268286, intron 2 of 28)	intron (NM_001268286, intron 2 of 28)	22167.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-11607917-2	chr17	11607817	11608017	+	842.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016694, intron 6 of 11)	intron (NM_016694, intron 6 of 11)	275272.0	NR_045808	52027.0	Mm.442257	NR_045808		D17Ertd648e	-	DNA segment, Chr 17, ERATO Doi 648, expressed	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-91705756-4	chr6	91705655	91705855	+	993.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009320, intron 2 of 14)	intron (NM_009320, intron 2 of 14)	21688.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-134531290-2	chr5	134531190	134531390	+	553.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039162, intron 2 of 15)	intron (NM_001039162, intron 2 of 15)	21144.0	NM_001039162	269713.0	Mm.255138	NM_009990	ENSMUSG00000063146	Clip2	B230327O20|CLIP-115|Clip1|Cyln2|WSCR4|mKIAA0291|wbscr4	CAP-GLY domain containing linker protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120491839-4	chr11	120491700	120491900	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013770)	promoter-TSS (NM_013770)	-37.0	NM_013770	27376.0	Mm.3991	NM_013770	ENSMUSG00000025792	Slc25a10	Dic	solute carrier family 25 (mitochondrial carrier, dicarboxylate transporter), member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-116476057-2	chr4	116475957	116476157	+	563.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-11876.0	NM_008641	17776.0	Mm.9287	NM_008641	ENSMUSG00000003810	Mast2	MAST205|Mtssk	microtubule associated serine/threonine kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-71218807-3	chr14	71218704	71218904	+	726.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPLTR2_Mm|LTR|ERVK	-32469.0	NR_046075	100043132.0	Mm.399336	NR_046075	ENSMUSG00000115139	Gm4251	-	predicted gene 4251	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46356928-4	chr19	46356817	46357017	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029186)	promoter-TSS (NM_029186)	37.0	NM_029186	75146.0	Mm.159290	NM_029186	ENSMUSG00000025227	Mfsd13a	4930449A08Rik|4930538D17Rik|Tmem180	major facilitator superfamily domain containing 13a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4640005-2	chr16	4639905	4640105	+	898.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_139307)	promoter-TSS (NM_139307)	60.0	NM_139307	246154.0	Mm.482140	NM_139307	ENSMUSG00000039646	Vasn	2610528G05Rik|Atia|Slitl2	vasorin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-46912513-2	chr17	46912413	46912613	+	598.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008938, intron 1 of 2)	intron (NM_008938, intron 1 of 2)	2028.0	NM_008938	19133.0	Mm.291370	NM_008938	ENSMUSG00000023978	Prph2	AOFMD|AVMD|Nmf193|PRPH|RP7|Rd-2|Rd2|Rds|Tspan22|rds	peripherin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-97235194-3	chr13	97235085	97235285	+	926.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5920.0	NM_007930	13803.0	Mm.241073	NM_007930	ENSMUSG00000041773	Enc1	Nrpb|PIG10	ectodermal-neural cortex 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-95715882-4	chr8	95715805	95716005	+	994.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001035123)	promoter-TSS (NM_001035123)	-8.0	NM_001035123	66083.0	Mm.261321	NM_001035123	ENSMUSG00000031671	Setd6	0610039J04Rik|3110004G14Rik|AI413388|C76402	SET domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171843109-4	chr1	171842954	171843154	+	978.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289470, intron 2 of 8)	L1_Mur3|LINE|L1	3357.0	NM_013489	12523.0	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	2.37494585979061	2.54418276002345	1.96001653964571	1.42596075273977	3.28629255830627	2.81566912856796	3.0936517906754	3.07430454523214	1.88667602934307	0.0157122878292481	0.15009238007589
Merged-chr1-88247044-4	chr1	88246971	88247171	+	905.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001281466, intron 24 of 41)	intron (NM_001281466, intron 24 of 41)	20051.0	NM_001281466	100040766.0	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	Heatr7b1	maestro heat-like repeat family member 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-92784069-2	chr9	92783969	92784169	+	643.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_040770, intron 4 of 4)	Lx5|LINE|L1	65353.0	NR_040770	331003.0	Mm.50805	NR_040770	ENSMUSG00000101734	4933400C23Rik	4933400C23	RIKEN cDNA 4933400C23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-57988045-4	chr15	57987941	57988141	+	852.1749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173862, intron 1 of 3)	intron (NM_173862, intron 1 of 3)	2138.0	NM_173862	239463.0	Mm.221241	NM_173862	ENSMUSG00000051225	Fam83a	-	family with sequence similarity 83, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125159899-2	chr6	125159799	125159999	+	694.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039669, intron 9 of 9)	PB1D9|SINE|Alu	5874.0	NM_008084	14433.0	Mm.304088	NM_008084	ENSMUSG00000057666	Gapdh	Gapd	glyceraldehyde-3-phosphate dehydrogenase	protein-coding	-2.18243820993087	-2.15538464093652	-2.16356586349869	-2.17028616330028	-2.18053909940952	-2.15361173587851	-2.16171381403791	-2.0403552525549	0.759018020146679	0.829933115115583	1
Merged-chr16-91835934-2	chr16	91835834	91836034	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110275, intron 16 of 28)	intron (NM_001110275, intron 16 of 28)	95696.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-90386367-4	chr16	90386311	90386511	+	922.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015755)	promoter-TSS (NM_015755)	14.0	NM_015755	26559.0	Mm.125874	NM_015755	ENSMUSG00000053414	Hunk	Bstk1|Mak-v	hormonally upregulated Neu-associated kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-78201443-4	chr17	78201293	78201493	+	932.1845089999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015800, intron 1 of 16)	CpG	1145.0	NM_015800	50766.0	Mm.311912	NM_015800	ENSMUSG00000024074	Crim1	AU015004	cysteine rich transmembrane BMP regulator 1 (chordin like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-75830535-4	chr2	75830430	75830630	+	835.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1647.0	NM_172666	228061.0	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-48595868-3	chr1	48595759	48595959	+	908.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6A|LTR|ERVK	-648757.0	NR_151585	442837.0	Mm.337149	NM_001002792	ENSMUSG00000051616	C230029F24Rik	-	RIKEN cDNA C230029F24 gene	ncRNA	-0.325523219287089	-0.0729870329188683	-0.698346409607964	-0.701003629601155	-0.704756005197865	-0.694122997021887	-0.69758651694788	-0.700539528171548	-3.25652399919928	0.253452741391918	1
Merged-chr10-60369604-4	chr10	60369503	60369703	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001159572, exon 7 of 7)	3' UTR (NM_001159572, exon 7 of 7)	22752.0	NM_028732	74048.0	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76787456-1	chr15	76787356	76787556	+	687.5	f0_balb.idr	intron (NM_198420, intron 1 of 10)	intron (NM_198420, intron 1 of 10)	30714.0	NM_001168288	223666.0	Mm.322931	NM_198420	ENSMUSG00000033697	Arhgap39	9530053N22|AI843066|D15Wsu169e|Kiaa1688|Porf-2	Rho GTPase activating protein 39	protein-coding	0.727772413665298	0.768832545522891	0.755623135032424	1.47040277492329	1.57113350698794	1.18507712847444	1.63860785752041	1.2472516489638	1.87000458026047	0.199275240967045	0.682971184892037
Merged-chr10-16589611-4	chr10	16589497	16589697	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	506185.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-31787593-1	chr11	31787493	31787693	+	696.0	f0_balb.idr	Intergenic	Intergenic	36954.0	NR_102310	414116.0	Mm.150222	NR_102310	ENSMUSG00000085772	D630024D03Rik	-	RIKEN cDNA D630024D03 gene	ncRNA	-1.50874880059862	-1.47511716453926	-1.4852876488768	-1.49364198752927	-1.50638792193216	-0.992828729615453	-1.48298527415345	-1.4921465649048	2.3185461113984	0.50391666537493	1
Merged-chr9-31174822-1	chr9	31174722	31174922	+	964.0	f0_balb.idr	intron (NM_001357698, intron 3 of 17)	intron (NM_001357698, intron 3 of 17)	37026.0	NM_001357698	11804.0	Mm.19133	NM_009691	ENSMUSG00000031996	Aplp2	AI790698|APLP-2|CDEBP	amyloid beta (A4) precursor-like protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-127914344-2	chr3	127914279	127914479	+	743.166626	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-1792.0	NR_040552	329753.0	Mm.119720	NR_040552	ENSMUSG00000104763	9830132P13Rik	9830132P13	RIKEN cDNA 9830132P13 gene	ncRNA	1.06241247868314	0.52550806339313	0.842631648206869	1.13979577162693	0.649476199760769	0.885696115073982	0.519456772967853	0.819931375773902	-1.09045039294793	0.488516101450735	1
Merged-chr13-37349354-1	chr13	37349254	37349454	+	868.0	f1_balb.idr	intron (NM_010745, intron 1 of 4)	intron (NM_010745, intron 1 of 4)	4009.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	-1.3608058830394	-1.32613986304479	-1.48850445674438	-1.49647425515136	-1.50863350939342	-1.47669956815421	-1.33364581295629	-1.49504766504697	-0.636424268964196	0.842733185035011	1
Merged-chr19-29487549-5	chr19	29487433	29487633	+	943.099976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34454.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-88856697-2	chr15	88856597	88856797	+	619.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5497.0	NM_145478	223775.0	Mm.400129	NM_145478	ENSMUSG00000035828	Pim3	BC026639|Kid1	proviral integration site 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-97879416-2	chr16	97879316	97879516	+	891.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_174847, intron 8 of 13)	intron (NM_174847, intron 8 of 13)	-2125.0	NR_105929	102465581.0		NR_105929	ENSMUSG00000105138	Mir6964	mmu-mir-6964	microRNA 6964	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71311925-3	chr17	71311797	71311997	+	896.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357336)	promoter-TSS (NM_001357336)	-341.0	NM_001357336	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141453129-2	chr7	141453029	141453229	+	681.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-2059.0	NM_025802	66853.0	Mm.29998	NM_025802	ENSMUSG00000025509	Pnpla2	0610039C21Rik|1110001C14Rik|Atgl|TTS-2.2	patatin-like phospholipase domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-60133292-2	chr2	60133192	60133392	+	610.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-7552.0	NM_001001182	407823.0	Mm.228071	NM_001001182	ENSMUSG00000026987	Baz2b	5830435C13Rik|BC053917|D2Ertd794e	bromodomain adjacent to zinc finger domain, 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-144553794-4	chr7	144553700	144553900	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033319)	promoter-TSS (NM_001033319)	-71.0	NM_001195086	233977.0	Mm.490347	NM_001033319	ENSMUSG00000037519	Ppfia1	C030014K08Rik|C87158|LIP.1|LIP1	protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-135333904-1	chr6	135333804	135334004	+	868.0	f0_balb.idr	Intergenic	Intergenic	-23520.0	NM_029595	76400.0	Mm.293018	NM_029595	ENSMUSG00000047104	Pbp2	1700023A18Rik|AI326308|Pebp-2|Pebp2	phosphatidylethanolamine binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-59546499-2	chr4	59546399	59546599	+	661.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144904, intron 1 of 14)	intron (NM_144904, intron 1 of 14)	2865.0	NM_178164	230257.0	Mm.331640	NM_144904	ENSMUSG00000028382	Ptbp3	5830471K22Rik|AA407443|AI462022|AW107884|C86549|Rod1	polypyrimidine tract binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-103842539-3	chr2	103842432	103842632	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31910.0	NR_040514	78031.0	Mm.243867	NR_040514	ENSMUSG00000086687	4930547E08Rik	-	RIKEN cDNA 4930547E08 gene	ncRNA	-0.533614148895781	-0.345860600189452	-0.527280274646516	-0.529671961443125	-0.284117316203069	-0.52345551753597	-0.0987017617091655	-0.376607482892105	2.29543501943981	0.353147998653417	1
Merged-chr3-152461656-1	chr3	152461556	152461756	+	812.0	f0_c57.idr	3' UTR (NM_001346655, exon 13 of 13)	3' UTR (NM_001346655, exon 13 of 13)	64972.0	NM_001287139	108946.0	Mm.379292	NM_198416	ENSMUSG00000039068	Zzz3	3110065C23Rik|6430567E01Rik|AA408566|AI481057|AW556059|R75514	zinc finger, ZZ domain containing 3	protein-coding	0.240451819528648	0.485061615142009	0.203518017028699	0.0447787811983631	-0.117099278175642	-0.103042407101648	-0.107632355792348	-0.111537113927037	-3.76945049951642	0.0788289198769565	1
Merged-chr11-20930821-4	chr11	20930730	20930930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-99722.0	NM_173752	216551.0	Mm.76694	NM_173752	ENSMUSG00000042363	Lgalsl	1110067D22Rik|A530071M23|Grpa|Hspc159|Lgalsla	lectin, galactoside binding-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-33643253-4	chr2	33643166	33643366	+	837.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_046275, exon 3 of 3)	non-coding (NR_046275, exon 3 of 3)	2073.0	NR_046275	100504399.0	Mm.72070	NM_177842		C130021I20Rik	-	Riken cDNA C130021I20 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-87566306-4	chr3	87566197	87566397	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40719.0	NM_001359750	27049.0	Mm.219460	NM_012051	ENSMUSG00000003382	Etv3	AI414410|METS|Pe1	ets variant 3	protein-coding	-0.472184297159632	-0.0690490732275938	0.450163847255483	-0.465878727364852	-0.471243191353444	-0.456142627644336	-0.461027633075248	-0.465217988485704	-3.70552883630165	0.153995803287759	1
Merged-chr2-166076120-4	chr2	166076053	166076253	+	873.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252579, intron 18 of 20)	intron (NM_001252579, intron 18 of 20)	79132.0	NM_001355619	72043.0	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41322419-1	chr19	41322319	41322519	+	702.0	f0_balb.idr	intron (NM_031376, intron 7 of 16)	intron (NM_031376, intron 7 of 16)	-58415.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-130962090-2	chr2	130961980	130962180	+	839.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009730, intron 10 of 28)	intron (NM_009730, intron 10 of 28)	55585.0	NM_009730	11990.0	Mm.119936	NM_009730	ENSMUSG00000027312	Atrn	AW558010|Mgca|mg	attractin	protein-coding	2.1153273525074	2.67218758658947	2.44970896983369	1.40754238846727	2.26867256148745	3.42394874432068	3.24413773736558	2.9164629879138	1.55022029369583	0.054461204771208	0.342585914808609
Merged-chr2-167895223-4	chr2	167895088	167895288	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-37139.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43047420-4	chr4	43047311	43047511	+	976.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1191.0	NM_172691	230088.0	Mm.260162	NM_172691	ENSMUSG00000036002	Fam214b	B230312A22Rik	family with sequence similarity 214, member B	protein-coding	3.21422686131779	2.74029761976085	1.80455396673926	2.30841821323874	2.33852719412871	3.41515425044796	2.98476725474677	2.79928160940478	0.566534524872531	0.458775968448788	0.919607527898796
Merged-chr1-172012250-2	chr1	172012202	172012402	+	703.75	f0_balb.idr|f1_c57bl6.idr	intron (NM_033509, intron 3 of 7)	intron (NM_033509, intron 3 of 7)	14993.0	NM_033509	93840.0	Mm.36148	NM_033509	ENSMUSG00000026556	Vangl2	C530001F03Rik|Lootl|Lp|Lpp1|Ltap|Vang1l2|loop-tail|ska17|ska<m17Jus>|stbm|strabismus	VANGL planar cell polarity 2	protein-coding	-2.18138529563533	-2.15523716995652	-2.1631445789866	-2.16963996020037	-2.05513010215571	-2.15352360143315	-2.16135451490766	-2.16847729006863	0.759018020146679	0.829933115115583	1
Merged-chr2-34360199-4	chr2	34360134	34360334	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290576, intron 2 of 7)	intron (NM_001290576, intron 2 of 7)	11811.0	NM_001290576	18516.0	Mm.239941	NM_016768	ENSMUSG00000038718	Pbx3	-	pre B cell leukemia homeobox 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97176926-2	chr11	97176826	97177026	+	670.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008379, intron 8 of 21)	intron (NM_008379, intron 8 of 21)	10966.0	NM_008379	16211.0	Mm.251013	NM_008379	ENSMUSG00000001440	Kpnb1	AA409963|IPOB|Impnb	karyopherin (importin) beta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152784365-4	chr1	152784270	152784470	+	996.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-15783.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-23281334-2	chr16	23281234	23281434	+	573.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252505, intron 2 of 7)	intron (NM_001252505, intron 2 of 7)	-9136.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-62181029-2	chr18	62180932	62181132	+	662.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013754, intron 1 of 1)	B3|SINE|B2	932.0	NM_001013754	225609.0	Mm.296917	NM_001013754	ENSMUSG00000054589	Gm9949	EG225609	predicted gene 9949	protein-coding	1.48527747828172	1.00118037396769	1.14407469819052	1.48292381182191	1.86430773963182	0.778518885782626	0.764911693834483	0.95153279651305	-0.329738882260381	0.814112852697657	0.998431161219273
Merged-chr10-45577890-4	chr10	45577802	45578002	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172473)	promoter-TSS (NM_172473)	73.0	NM_172473	209462.0	Mm.458633	NM_172473	ENSMUSG00000038822	Hace1	1700042J16Rik|A730034A22Rik|BC025474	HECT domain and ankyrin repeat containing, E3 ubiquitin protein ligase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120453875-2	chr11	120453775	120453975	+	781.833374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_012065)	promoter-TSS (NM_012065)	-375.0	NM_012065	18588.0	Mm.39200	NM_012065	ENSMUSG00000025386	Pde6g	Pdeg|p3AT	phosphodiesterase 6G, cGMP-specific, rod, gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-55531471-5	chr4	55531379	55531579	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010637, intron 2 of 4)	CpG	996.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	4.91550282086475	4.36829390543681	4.22804830839986	4.47728377776628	4.0518554943946	4.45882408965259	4.71628475565098	3.86767850877379	-0.286914703859502	0.481644899179264	0.929561742684099
Merged-chr2-131510071-4	chr2	131509979	131510179	+	816.520813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177840, intron 1 of 3)	intron (NM_001177840, intron 1 of 3)	18217.0	NM_001177838	228608.0	Mm.136586	NM_145533	ENSMUSG00000027333	Smox	B130066H01Rik|PAO|PAOh1|SMO	spermine oxidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-37337416-4	chr13	37337296	37337496	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7949.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-95659591-2	chr9	95659491	95659691	+	643.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_029620, intron 2 of 8)	L1MB7|LINE|L1	21963.0	NM_029620	76477.0	Mm.46016	NM_029620	ENSMUSG00000015354	Pcolce2	2400001O18Rik|Pcpe2	procollagen C-endopeptidase enhancer 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80226534-4	chr10	80226423	80226623	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023431)	promoter-TSS (NM_023431)	-75.0	NM_023431	68114.0	Mm.273418	NM_023431	ENSMUSG00000020156	Mum1	2610019J09|9430059D04Rik|UBE-1C2	melanoma associated antigen (mutated) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-74896600-4	chr11	74896516	74896716	+	980.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197943, intron 1 of 22)	CpG	464.0	NM_197943	97761.0	Mm.245894	NM_197943	ENSMUSG00000038351	Sgsm2	D630003G22Rik|R74628|Rutbc1|mKIAA0397	small G protein signaling modulator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-42000081-4	chr19	42000006	42000206	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145500, intron 1 of 2)	MIR|SINE|MIR	18343.0	NM_145500	226122.0	Mm.22948	NM_145500	ENSMUSG00000025171	Ubtd1	BC016129	ubiquitin domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-13538944-4	chr2	13538823	13539023	+	882.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010067, intron 1 of 10)	intron (NM_010067, intron 1 of 10)	5741.0	NM_010067	13434.0	Mm.6979	NM_010067	ENSMUSG00000026723	Trdmt1	Dnmt2|Rnmt2	tRNA aspartic acid methyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-120816226-2	chr4	120816126	120816326	+	563.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357192)	promoter-TSS (NM_001357192)	-513.0	NM_001357192	18046.0	Mm.318389	NM_008692	ENSMUSG00000032897	Nfyc	-	nuclear transcription factor-Y gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-55105368-4	chr13	55105374	55105574	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_012017, exon 1 of 7)	exon (NM_012017, exon 1 of 7)	165.0	NM_012017	26919.0	Mm.22795	NM_012017	ENSMUSG00000021481	Zfp346	Jaz|Znf346	zinc finger protein 346	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126551985-2	chr7	126551885	126552085	+	588.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_146200, exon 16 of 21)	exon (NM_146200, exon 16 of 21)	14381.0	NM_146200	56347.0	Mm.22776	NM_146200	ENSMUSG00000030738	Eif3c	110kDa|3230401O13Rik|Eif3s8|NIPIL(A3)|NipilA3|Xs|Xsl	eukaryotic translation initiation factor 3, subunit C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-88762945-2	chr5	88762845	88763045	+	806.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-2068.0	NM_007832	13178.0	Mm.298892	NM_007832	ENSMUSG00000029366	Dck	-	deoxycytidine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-73613932-4	chr15	73613781	73613981	+	780.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033219, intron 1 of 7)	L1MC|LINE|L1	3443.0	NM_001357747	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75194282-1	chr11	75194182	75194382	+	695.0	f1_balb.idr	exon (NM_177708, exon 1 of 2)	exon (NM_177708, exon 1 of 2)	289.0	NM_177708	237847.0	Mm.82661	NM_177708	ENSMUSG00000045287	Rtn4rl1	Ngr3|Ngrh2|Ngrl2	reticulon 4 receptor-like 1	protein-coding	0.973387961734288	0.658766922113961	0.642143278434724	0.853024679483298	2.19595241304197	1.45629850662354	0.645851873649872	1.33763868615056	3.06691448899243	0.0423683288870774	0.294786846174139
Merged-chr12-118775591-4	chr12	118775480	118775680	+	826.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70749.0	NM_177082	320145.0	Mm.51682	NM_177082	ENSMUSG00000048562	Sp8	D930049B17Rik|mBtd	trans-acting transcription factor 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-107607961-4	chr7	107607878	107608078	+	999.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163557, intron 1 of 25)	intron (NM_001163557, intron 1 of 25)	1134.0	NM_001163557	19024.0	Mm.2817	NM_008905	ENSMUSG00000036528	Ppfibp2	Cclp1	PTPRF interacting protein, binding protein 2 (liprin beta 2)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-53007394-3	chr2	53007287	53007487	+	710.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	149519.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-77580696-2	chr10	77580596	77580796	+	883.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145925)	promoter-TSS (NM_145925)	-959.0	NM_145925	108705.0	Mm.28853	NM_145925	ENSMUSG00000009291	Pttg1ip	1810010L20Rik|AI314311|AU018448|C79540|PBF	pituitary tumor-transforming 1 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67036372-4	chr10	67036294	67036494	+	915.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178606, intron 3 of 7)	intron (NM_178606, intron 3 of 7)	31319.0	NR_110511	102634101.0	Mm.445258	NR_110511	ENSMUSG00000112925	Gm31763	-	predicted gene, 31763	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129634094-3	chr2	129633981	129634181	+	866.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38619.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-63716354-4	chr9	63716259	63716459	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016769, intron 1 of 8)	intron (NM_016769, intron 1 of 8)	41635.0	NM_016769	17127.0	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27514331-2	chr2	27514231	27514431	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080848)	promoter-TSS (NM_080848)	-816.0	NM_080848	140858.0	Mm.28265	NM_080848	ENSMUSG00000026917	Wdr5	2410008O07Rik|AA408785|AA960360|Big|Big-3	WD repeat domain 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-79076696-4	chr11	79076600	79076800	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013571, intron 1 of 17)	intron (NM_013571, intron 1 of 17)	-16864.0	NM_001348207	16706.0	Mm.4745	NM_013571	ENSMUSG00000018334	Ksr1	AW492498|B-KSR1|D11Bhm183e|D11Bhm184e|Ksr|RSU2|hb|mKSR1	kinase suppressor of ras 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-51519389-2	chr10	51519289	51519489	+	592.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	28491.0	NM_013532	14728.0	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-115419812-2	chr8	115419712	115419912	+	886.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	287082.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-72014032-4	chr1	72013914	72014114	+	977.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8819.0	NR_040454	71134.0	Mm.370574	NR_040454	ENSMUSG00000101848	4933417E11Rik	-	RIKEN cDNA 4933417E11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80163977-2	chr10	80163877	80164077	+	820.833374	f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 1 of 4)	intron (NR_038088, intron 1 of 4)	-3862.0	NM_007705	12696.0	Mm.17898	NM_007705	ENSMUSG00000045193	Cirbp	Cirp|R74941	cold inducible RNA binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-105944265-3	chr11	105944162	105944362	+	618.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_007805, exon 1 of 6)	5' UTR (NM_007805, exon 1 of 6)	225.0	NM_007805	13056.0	Mm.149403	NM_007805	ENSMUSG00000019590	Cyb561	-	cytochrome b-561	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-57095659-1	chr17	57095559	57095759	+	635.0	f1_c57bl6.idr	intron (NR_033508, intron 3 of 3)	B3A|SINE|B2	-7877.0	NM_009451	22153.0	Mm.7420	NM_009451	ENSMUSG00000062591	Tubb4a	AI325297|M(beta)4|Tubb|Tubb4	tubulin, beta 4A class IVA	protein-coding	-0.255542320427575	-0.0597067047287199	0.29345729647959	-0.250386093711847	-0.116872189528277	-0.242292611614287	-0.246373506327612	0.158753922323442	-0.499108043672412	0.82862296610326	1
Merged-chr12-85490146-4	chr12	85490047	85490247	+	912.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16257.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-15285655-3	chr3	15285581	15285781	+	726.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3B|LINE|L1	46621.0	NM_001076679	751864.0	Mm.431296	NM_001076679	ENSMUSG00000078783	Gm9733	-	predicted gene 9733	protein-coding	-2.18233058068552	-2.15536956715525	-2.16352280018114	-2.04193253143548	-2.18043796738662	-2.15360272754651	-2.16167708693786	-2.16902129354933	-0.683654500252594	0.846597994014493	1
Merged-chr14-70029188-4	chr14	70029072	70029272	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028560, intron 4 of 6)	intron (NM_028560, intron 4 of 6)	-48273.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-54963296-6	chr18	54963200	54963400	+	928.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175751, intron 2 of 9)	intron (NM_175751, intron 2 of 9)	26880.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-109875986-3	chr11	109875883	109876083	+	625.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30105.0	NR_045909	73257.0	Mm.250442	NR_045909	ENSMUSG00000087393	1700023C21Rik	-	RIKEN cDNA 1700023C21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-27031245-2	chr8	27031145	27031345	+	819.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_153592, intron 6 of 11)	intron (NM_153592, intron 6 of 11)	7446.0	NM_153592	244373.0	Mm.277699	NM_153592	ENSMUSG00000031483	Erlin2	BC036333|C87251|Spfh2	ER lipid raft associated 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-172305908-3	chr1	172305810	172306010	+	594.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6457.0	NM_080419	140559.0	Mm.271717	NM_080419	ENSMUSG00000038034	Igsf8	ESTM34|EWI-2|KCT-4|PGRL	immunoglobulin superfamily, member 8	protein-coding	1.75455671808271	1.7512002985057	0.963475515771816	1.63495981708763	1.8620182774639	0.987917090599373	0.967940244202724	2.28381491301898	0.313129199265799	0.809472196600451	0.998431161219273
Merged-chr2-30441954-4	chr2	30441850	30442050	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138748, intron 8 of 9)	intron (NM_138748, intron 8 of 9)	25900.0	NM_138748	110854.0	Mm.275393	NM_138748	ENSMUSG00000039515	Ptpa	2610042B21Rik|C77440|N28142|PR53|Ppp2r4	protein phosphatase 2 protein activator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-123687690-2	chr4	123687552	123687752	+	622.799988	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-3292.0	NM_001199136	11426.0	Mm.402299	NM_009600	ENSMUSG00000028649	Macf1	ABP620|Acf7|Aclp7|MACF|R74989|mKIAA0465	microtubule-actin crosslinking factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-132144706-2	chr2	132144606	132144806	+	812.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355430, intron 1 of 15)	CpG	402.0	NM_001355431	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-57975277-2	chr15	57975177	57975377	+	871.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MERVL_2A-int|LTR|ERVL	-10626.0	NM_173862	239463.0	Mm.221241	NM_173862	ENSMUSG00000051225	Fam83a	-	family with sequence similarity 83, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-152671856-4	chr2	152671771	152671971	+	834.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010376, intron 1 of 11)	intron (NM_010376, intron 1 of 11)	2410.0	NM_001159552	14950.0	Mm.277327	NM_010376	ENSMUSG00000019188	H13	1200006O09Rik|4930443L17Rik|5031424B04Rik|AV020344|H-13|Hm13|PSL3|Spp	histocompatibility 13	protein-coding	-0.316735751525798	-0.131650374157474	-0.150486349089001	-0.312355192475914	-0.0722293473256739	-0.30543901275342	0.111167035910788	-0.162494855609061	1.48267265170324	0.510158749844102	1
Merged-chr10-25361547-2	chr10	25361500	25361700	+	791.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358754, intron 1 of 16)	intron (NM_001358754, intron 1 of 16)	1802.0	NM_001358751	13822.0	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	-0.381415144386402	-0.0276459033678364	-0.636456819003537	-0.639052863379702	-0.498848844893856	-0.632323249304378	-0.635713759674596	-0.638599706187425	-2.35984409931276	0.376900488497883	1
Merged-chr15-15749419-2	chr15	15749319	15749519	+	703.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	-1028682.0	NM_009869	12565.0	Mm.439758	NM_009869	ENSMUSG00000025370	Cdh9	-	cadherin 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-10877356-2	chr15	10877256	10877456	+	610.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	48305.0	NR_040357	100502601.0	Mm.399434	NR_040357		Gm19276	-	predicted gene, 19276	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-72955810-3	chr9	72955724	72955924	+	863.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-2961.0	NM_026314	67685.0	Mm.31817	NM_026314	ENSMUSG00000092192	Dyx1c1	1700010I24Rik|Dnaaf4|EKN1|b2b811.1Clo|b2b811Clo	dyslexia susceptibility 1 candidate 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69890254-2	chr11	69890154	69890354	+	658.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153788, intron 5 of 21)	intron (NM_153788, intron 5 of 21)	5285.0	NM_153788	216859.0	Mm.288671	NM_153788	ENSMUSG00000001588	Acap1	Centb1	ArfGAP with coiled-coil, ankyrin repeat and PH domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3845785-1	chr19	3845685	3845885	+	607.0	f1_c57bl6.idr	Intergenic	(CAAAA)n|Simple_repeat|Simple_repeat	-5988.0	NM_001271496	12660.0	Mm.225505	NM_013490	ENSMUSG00000024843	Chka	CK|CK/EK-alpha|Chetk-alpha|Chk|ChoK|EK|EtnK-alpha	choline kinase alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-40692001-3	chr19	40691925	40692125	+	708.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009848, intron 1 of 9)	intron (NM_009848, intron 1 of 9)	32255.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	2.68175221050591	1.97677030415702	3.13708132551924	2.94600879883457	3.16036942310697	3.89110189052215	2.68772700233119	4.09528246833407	1.34506655495134	0.0447399173721817	0.304266761145956
Merged-chr10-127413723-2	chr10	127413623	127413823	+	890.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359244, intron 3 of 25)	intron (NM_001359244, intron 3 of 25)	-7144.0	NM_027900	71750.0	Mm.29342	NM_027900	ENSMUSG00000025404	R3hdm2	1300003K24Rik|AU041262|mKIAA1002	R3H domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-104791030-4	chr3	104790939	104791139	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291859, intron 1 of 4)	intron (NM_001291859, intron 1 of 4)	2005.0	NM_001291859	11853.0	Mm.262	NM_007484	ENSMUSG00000002233	Rhoc	AI324259|Arh9|Arhc	ras homolog family member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-46794102-2	chr11	46794002	46794202	+	686.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16697.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-156066639-1	chr2	156066539	156066739	+	581.0	f1_c57bl6.idr	intron (NM_139151, intron 3 of 11)	intron (NM_139151, intron 3 of 11)	1426.0	NM_139151	245865.0	Mm.330713	NM_139151	ENSMUSG00000038180	Spag4	1700041K21Rik|MNCb-0953|Sun4|mKIAA4118	sperm associated antigen 4	protein-coding	0.314945740601515	0.356930016069798	0.343568776878336	1.15044558560106	0.959253417126425	0.359893468369326	1.83013268166655	0.334869176314255	1.7603165446952	0.335334448031854	0.83593283300053
Merged-chr11-3183989-2	chr11	3183888	3184088	+	1000.0	f0_balb.idr|f1_balb.idr	intron (NM_030207, intron 4 of 32)	intron (NM_030207, intron 4 of 32)	9475.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-37431196-2	chr1	37431096	37431296	+	624.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026123, intron 1 of 5)	intron (NM_026123, intron 1 of 5)	1057.0	NM_001356528	67387.0	Mm.27404	NM_026123	ENSMUSG00000026111	Unc50	1110002A21Rik|GMH1|UNCL|URP	unc-50 homolog (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-12019354-2	chr19	12019254	12019454	+	802.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17386.0	NM_146680	258675.0	Mm.271517	NM_146680	ENSMUSG00000067529	Olfr1423	MOR239-3	olfactory receptor 1423	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-43738676-4	chr2	43738575	43738775	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10149.0	NM_001301832	76117.0	Mm.217350	NM_153820	ENSMUSG00000049744	Arhgap15	5830480G12Rik	Rho GTPase activating protein 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-173977810-4	chr1	173977726	173977926	+	995.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008327, intron 1 of 6)	intron (NM_008327, intron 1 of 6)	5018.0	NM_008327	26388.0	Mm.218770	NM_008327	ENSMUSG00000026535	Ifi202b	Ifbip-1|Ifi202|Ifi202a|p202	interferon activated gene 202B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-13832818-4	chr10	13832699	13832899	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025446, intron 1 of 5)	intron (NM_025446, intron 1 of 5)	36158.0	NM_025446	66253.0	Mm.45755	NM_025446	ENSMUSG00000019806	Aig1	1500031O19Rik|AV064870|AW413422|CGI-103	androgen-induced 1	protein-coding	7.07935296002701	7.77797744467845	7.60947738785839	7.09626104458405	7.06509251349087	7.37763033668004	7.46859089972469	6.70926515910112	-0.248706348998455	0.225136156634498	0.717001488400471
Merged-chr3-31093391-2	chr3	31093291	31093491	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1667.0	NM_001039090	20482.0	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81284975-2	chr10	81284875	81285075	+	966.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_001282095, intron 1 of 20)	intron (NM_001282095, intron 1 of 20)	806.0	NM_001282096	27375.0	Mm.27984	NM_013769	ENSMUSG00000034917	Tjp3	-	tight junction protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-20702968-4	chr14	20702862	20703062	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025366)	promoter-TSS (NM_025366)	-65.0	NM_025366	66121.0	Mm.246996	NM_025366	ENSMUSG00000063787	Chchd1	1110001O19Rik|2400010G13Rik|MRP-S37	coiled-coil-helix-coiled-coil-helix domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-14109858-4	chr16	14109762	14109962	+	983.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001081154, exon 27 of 27)	3' UTR (NM_001081154, exon 27 of 27)	49412.0	NM_001081154	223989.0	Mm.85442	NM_001081154	ENSMUSG00000060657	Marf1	4921513D23Rik|BC031575|C87306|E030019O05|Lkap|mKIAA0430	meiosis regulator and mRNA stability 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-64439233-4	chr13	64439114	64439314	+	927.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_053180, exon 8 of 8)	3' UTR (NM_053180, exon 8 of 8)	6661.0	NM_053180	105278.0	Mm.74982	NM_053180	ENSMUSG00000021483	Cdk20	4932702G04Rik|AU019450|AW558027|CDCH|Ccrk|PNQLARE|p42	cyclin-dependent kinase 20	protein-coding	4.27066545284427	4.12402340124205	2.82348542853076	3.99702223599647	3.15739163497086	3.8884613394628	2.30864286809463	3.84620832302049	-0.689418042305981	0.249201405829615	0.747698903845194
Merged-chr6-121179226-4	chr6	121179141	121179341	+	751.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4426.0	NR_130903	74043.0	Mm.491240	NM_028730	ENSMUSG00000067825	Pex26	4632428M11Rik	peroxisomal biogenesis factor 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-94177338-2	chr13	94177238	94177438	+	594.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172589, intron 3 of 3)	intron (NM_172589, intron 3 of 3)	107943.0	NM_029153	107767.0	Mm.201455	NM_029153	ENSMUSG00000021687	Scamp1	4930505M11Rik|AI415563|AW122395	secretory carrier membrane protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-49164495-2	chr13	49164395	49164595	+	730.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16167.0	NM_001290311	75607.0	Mm.342723	NM_029361	ENSMUSG00000037989	Wnk2	1810073P09Rik|AW122246|ESTM15|X83337|mKIAA1760	WNK lysine deficient protein kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-17642410-2	chr6	17642310	17642510	+	623.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007604, intron 1 of 9)	intron (NM_007604, intron 1 of 9)	5400.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-70977785-4	chr2	70977692	70977892	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145524, intron 5 of 9)	intron (NM_145524, intron 5 of 9)	40582.0	NM_001110512	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16821884-2	chr7	16821784	16821984	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039878, intron 1 of 17)	intron (NM_001039878, intron 1 of 17)	-5152.0	NM_173430	243853.0	Mm.39703	NM_173430	ENSMUSG00000048920	Fkrp	A830029B19Rik|AI842067|AI847300|LGMD1I|MDC1C	fukutin related protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72513815-2	chr6	72513715	72513915	+	921.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30576.0	NM_007599	12332.0	Mm.18626	NM_007599	ENSMUSG00000056737	Capg	gCap39|mbh1	capping protein (actin filament), gelsolin-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70185327-3	chr11	70185242	70185442	+	981.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA6|LINE|L1	18719.0	NM_010796	17312.0	Mm.252405	NM_010796	ENSMUSG00000000318	Clec10a	CD301a|M-ASGP-BP-1|Mgl|Mgl1	C-type lectin domain family 10, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-102671268-2	chr13	102671168	102671368	+	705.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22279.0	NM_001360519	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	0.613602406428209	0.262874995540729	0.256577976137767	0.776860118306067	0.622223871437462	0.264294286990076	0.257966955525183	0.879929600342765	0.235197353326483	0.90333684373509	1
Merged-chr2-35209538-5	chr2	35209534	35209734	+	952.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8514.0	NM_026697	68365.0	Mm.198264	NM_026697	ENSMUSG00000026878	Rab14	0610030G24Rik|2810475J17Rik|A830021G03Rik|AI314285|AI649155|D030017L14Rik	RAB14, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-72202415-3	chr2	72202323	72202523	+	756.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355478, intron 11 of 26)	intron (NM_001355478, intron 11 of 26)	-83214.0	NM_023057	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	1.95852892766127	2.31652037000283	1.99675564550469	2.59708991320146	1.19964096155908	1.75246370430604	2.14038290505253	1.95111176506614	-1.1570314832972	0.239323427717256	0.735879673437119
Merged-chr19-36816127-3	chr19	36816047	36816247	+	812.844421	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18085.0	NM_001163635	74493.0	Mm.249310	NM_001163635	ENSMUSG00000024811	Tnks2	5430432P15Rik|AA517131|AI662480|ARTD6|TNKS-2|Tank2	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-46252239-3	chr11	46252149	46252349	+	892.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252459, intron 19 of 30)	intron (NM_001252459, intron 19 of 30)	16692.0	NM_177075	320116.0	Mm.39600	NM_177075	ENSMUSG00000048721	Fndc9	C030019I05Rik	fibronectin type III domain containing 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-43529453-2	chr19	43529353	43529553	+	557.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4848.0	NM_010324	14718.0	Mm.19039	NM_010324	ENSMUSG00000025190	Got1	AI789014|Got-1|cAspAT|cCAT	glutamic-oxaloacetic transaminase 1, soluble	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-122570316-1	chr2	122570216	122570416	+	794.0	f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	40961.0	NM_025961	67092.0	Mm.29975	NM_025961	ENSMUSG00000027199	Gatm	1810003P21Rik|AI314789|AT	glycine amidinotransferase (L-arginine:glycine amidinotransferase)	protein-coding	0.845348596227931	1.2099878490418	0.902853708536153	2.27885160822873	2.69156085178458	0.934641260000525	1.57618728787238	1.91914118885606	1.20904862887589	0.354139101249144	0.853132398390271
Merged-chr9-60985445-2	chr9	60985345	60985545	+	936.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31624.0	NR_040767	330956.0	Mm.207985	NR_040767	ENSMUSG00000111290	Gm5122	A430102L10	predicted gene 5122	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71693934-2	chr17	71693834	71694034	+	705.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_177087, intron 6 of 19)	intron (NM_177087, intron 6 of 19)	20673.0	NM_177087	320159.0	Mm.187372	NM_177087	ENSMUSG00000045761	Togaram2	4632412N22Rik|Fam179a	TOG array regulator of axonemal microtubules 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135674499-4	chr5	135674399	135674599	+	707.575012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14646.0	NM_008898	18984.0	Mm.3863	NM_008898	ENSMUSG00000005514	Por	4933424M13Rik|CPR|CYPOR|P450R	P450 (cytochrome) oxidoreductase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116027434-1	chr11	116027334	116027534	+	605.0	f0_c57.idr	Intergenic	Intergenic	-2882.0	NM_001286006	217331.0	Mm.297706	NM_172569	ENSMUSG00000020770	Unk	B230379M23Rik|Unkh|Zc3h5|Zc3hdc5|mKIAA1753	unkempt family zinc finger	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-83134418-4	chr15	83134248	83134448	+	963.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347082, intron 3 of 7)	intron (NM_001347082, intron 3 of 7)	-11547.0	NM_029101	74778.0	Mm.30056	NM_029101	ENSMUSG00000018040	Rrp7a	1110014J01Rik|AA408146|Kheg1	ribosomal RNA processing 7 homolog A (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-69633234-1	chr3	69633134	69633334	+	628.0	f1_c57bl6.idr	Intergenic	Intergenic	-34274.0	NM_020026	26879.0	Mm.153710	NM_020026	ENSMUSG00000043300	B3galnt1	B3galt3|b3GT3	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 1	protein-coding	-0.00696903188429421	0.0192637421500324	1.23938373235019	0.641163266615757	0.176414249883127	0.0211509952099595	0.0126871933035212	0.00535953228776931	-3.54337828148129	0.0923790213665467	1
Merged-chr12-79725090-4	chr12	79724992	79725192	+	994.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 8 of 10)	intron (NM_009014, intron 8 of 10)	199641.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-35076719-4	chr7	35076618	35076818	+	943.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20152.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-70412263-4	chr4	70412194	70412394	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1859.0	NM_145990	214444.0	Mm.370777	NM_145990	ENSMUSG00000039298	Cdk5rap2	2900018K03Rik|an|mKIAA1633	CDK5 regulatory subunit associated protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5739832-2	chr17	5739732	5739932	+	719.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 8 of 8)	intron (NM_146073, intron 8 of 8)	-58825.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-91472393-4	chr6	91472307	91472507	+	892.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133928, intron 1 of 2)	MIR3|SINE|MIR	1016.0	NM_133928	72170.0	Mm.41622	NM_133928	ENSMUSG00000034203	Chchd4	2410012P20Rik|2810014D17Rik|AI838740	coiled-coil-helix-coiled-coil-helix domain containing 4	protein-coding	3.28941410996046	2.58025516112872	3.5550717621932	2.68786872614476	3.37551855094131	3.22253695393108	3.20753352508504	1.85819890481872	-0.0956379657165459	0.89231127018112	0.998431161219273
Merged-chr10-4107826-4	chr10	4107720	4107920	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170785, intron 26 of 27)	intron (NM_001170785, intron 26 of 27)	105300.0	NR_152620	102632515.0	Mm.416995	NR_152620	ENSMUSG00000111266	Gm30570	-	predicted gene, 30570	ncRNA	6.40721524459908	7.04423192647758	6.9619597893643	6.6154633699317	7.14536162590495	7.46575476109354	8.0720277902057	7.51348169711183	0.853221896485167	4.7614434119338e-05	0.00167366595868306
Merged-chr4-149738112-4	chr4	149738021	149738221	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177672)	promoter-TSS (NM_177672)	-53.0	NM_177672	230917.0	Mm.266704	NM_177672	ENSMUSG00000044700	Tmem201	AV028368|D4Ertd429e|Net5|Samp1	transmembrane protein 201	protein-coding	5.82744086372887	6.23003366832812	5.96217476795484	5.67035140754753	5.53178400811652	6.26609959670012	6.2671066604315	5.80757267377625	0.067431223981005	0.792908146340962	0.998431161219273
Merged-chr7-79149032-2	chr7	79148944	79149144	+	913.2000119999999	f0_balb.idr|f1_balb.idr	promoter-TSS (NM_008594)	promoter-TSS (NM_008594)	16.0	NM_001045489	17304.0	Mm.1451	NM_008594	ENSMUSG00000030605	Mfge8	AA408458|AI325141|MFG-E8|MP47|Mfgm|P47|SED1|lactadherin	milk fat globule-EGF factor 8 protein	protein-coding	1.61160271703638	2.04949566033996	1.05545604094558	1.56981915324696	1.91824967587078	2.0657547893276	1.28465573877682	1.42848294351507	0.298445105745887	0.792664413413367	0.998431161219273
Merged-chr5-23887306-4	chr5	23887188	23887388	+	794.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR19|LTR|ERVK	35055.0	NR_028536	100217436.0		NR_028536		Snord93	Gm22397|MBII-336	small nucleolar RNA, C/D box 93	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-108836387-4	chr6	108836279	108836479	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138677, intron 1 of 11)	intron (NM_138677, intron 1 of 11)	7738.0	NM_138677	192193.0	Mm.21596	NM_138677	ENSMUSG00000030104	Edem1	A130059K23Rik|EDEM|mKIAA0212	ER degradation enhancer, mannosidase alpha-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-11635824-4	chr8	11635716	11635916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001281975)	promoter-TSS (NM_001281975)	-59.0	NM_001281974	102334.0	Mm.12459	NM_133971	ENSMUSG00000031508	Ankrd10	4833425P12Rik|AW549277	ankyrin repeat domain 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124282907-1	chr6	124282807	124283007	+	708.0	f0_balb.idr	Intergenic	Intergenic	-21744.0	NM_001170395	93671.0	Mm.37426	NM_053094	ENSMUSG00000008845	Cd163	CD163v2|CD163v3	CD163 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-104589427-2	chr2	104589327	104589527	+	572.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-1057.0	NM_177253	228410.0	Mm.259876	NM_145529	ENSMUSG00000027176	Cstf3	4732468G05Rik|C79532|CstF-77	cleavage stimulation factor, 3' pre-RNA, subunit 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25378442-2	chr7	25378342	25378542	+	692.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_073028, exon 3 of 7)	non-coding (NR_073028, exon 3 of 7)	1623.0	NR_073027	654804.0	Mm.389841	NM_001039540	ENSMUSG00000053714	4732471J01Rik	-	RIKEN cDNA 4732471J01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-3667704-4	chr11	3667607	3667807	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198162, intron 3 of 25)	intron (NM_198162, intron 3 of 25)	9007.0	NM_198162	74522.0	Mm.139127	NM_198162	ENSMUSG00000034543	Morc2a	8430403M08Rik|Zcwcc1	microrchidia 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-25830132-2	chr1	25830032	25830232	+	828.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175642)	promoter-TSS (NM_175642)	-425.0	NM_175642	210933.0	Mm.336569	NM_175642	ENSMUSG00000033569	Adgrb3	A830096D10Rik|Bai3	adhesion G protein-coupled receptor B3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-109021965-3	chr9	109021864	109022064	+	925.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153430, intron 9 of 13)	intron (NR_153430, intron 9 of 13)	-16603.0	NM_001284332	66940.0	Mm.196533	NM_025858	ENSMUSG00000025647	Shisa5	2310008D10Rik|6430628I05Rik|Scotin|mShisa5	shisa family member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-122184080-3	chr2	122184011	122184211	+	889.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026251, intron 1 of 17)	RLTR35B_MM|LTR|ERVL	2078.0	NM_026251	67578.0	Mm.150462	NM_026251	ENSMUSG00000027233	Patl2	4930424G05Rik|Pat1a	protein associated with topoisomerase II homolog 2 (yeast)	protein-coding	0.598139117906682	0.875139189388227	1.3088894801553	0.616155287882928	1.3922039109859	1.80976829180203	0.629759352400697	0.996187307009267	1.65162333819704	0.280306840451703	0.783412873231201
Merged-chr17-64873813-3	chr17	64873657	64873857	+	905.18335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37686.0	NM_030031	78057.0	Mm.109380	NM_030031	ENSMUSG00000024088	4930583I09Rik	-	RIKEN cDNA 4930583I09 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-53463363-4	chr17	53463255	53463455	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172497)	promoter-TSS (NM_172497)	-34.0	NM_172497	211482.0	Mm.60887	NM_172497	ENSMUSG00000023931	Efhb	4921525D22Rik	EF hand domain family, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-45444896-4	chr13	45444791	45444991	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55149.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	2.96053373082216	2.42580820589605	3.65425000122183	2.07785364409384	3.52098054034529	3.03832217402314	2.81412969915546	3.79441341831282	0.709394511038744	0.302914113705124	0.805369375735134
Merged-chr4-35789134-2	chr4	35789030	35789230	+	645.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175516, intron 1 of 2)	L1_Mus1|LINE|L1	56074.0	NM_001166001	242384.0	Mm.132507	NM_175516	ENSMUSG00000045083	Lingo2	B230217C06Rik|Lern3|Lrrn6c	leucine rich repeat and Ig domain containing 2	protein-coding	0.895123430455528	0.359278877231249	0.34869822936419	0.340409004475315	1.26657375847321	0.361639589625004	1.43514418737789	0.341865324392325	2.18394121260816	0.251173635542293	0.74939852766158
Merged-chr9-106822673-7	chr9	106822499	106822699	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001015507, intron 1 of 22)	CpG	623.0	NM_001015507	321006.0	Mm.440089	NM_001015507	ENSMUSG00000040325	Dcaf1	AI447437|B930007L02Rik|Vprbp|mKIAA0800	DDB1 and CUL4 associated factor 1	protein-coding	3.99888952246059	3.16339103869874	3.90215445208307	3.48403938649567	3.62917351714536	5.1412958144242	3.93210599730684	3.66731055448594	0.774936906355765	0.145719256246462	0.596091332081597
Merged-chr5-110106300-2	chr5	110106200	110106400	+	808.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_207279)	TTS (NM_207279)	1897.0	NM_145147	107999.0	Mm.86267	NM_145147	ENSMUSG00000033434	Gtpbp6	AV119224|Pgbpll|pgpl	GTP binding protein 6 (putative)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139060598-3	chr5	139060483	139060683	+	830.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359099, intron 6 of 10)	intron (NM_001359099, intron 6 of 10)	-65630.0	NM_008808	18590.0	Mm.2675	NM_008808	ENSMUSG00000025856	Pdgfa	-	platelet derived growth factor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-74948662-3	chr5	74948512	74948712	+	698.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045866)	promoter-TSS (NR_045866)	-582.0	NR_045866	619945.0	Mm.359372	NM_001037908	ENSMUSG00000072874	Gm6116	EG619945	predicted gene 6116	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-41933060-4	chr10	41933004	41933204	+	882.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034858, intron 12 of 17)	intron (NM_001034858, intron 12 of 17)	45665.0	NM_001013370	140742.0	Mm.139418	NM_001013370	ENSMUSG00000038332	Sesn1	1110002G11Rik|AU044290|Pa26|Sest1	sestrin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-86456116-2	chr6	86456016	86456216	+	761.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001243742, intron 6 of 9)	intron (NM_001243742, intron 6 of 9)	17470.0	NM_001243741	232196.0	Mm.404040	NM_146170	ENSMUSG00000046679	C87436	-	expressed sequence C87436	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-120535744-2	chr5	120535644	120535844	+	571.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_145853, exon 28 of 28)	3' UTR (NM_145853, exon 28 of 28)	24552.0	NM_001177594	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-15306211-4	chr9	15306091	15306291	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027261)	promoter-TSS (NM_027261)	-23.0	NM_029248	75316.0	Mm.354115	NM_026541	ENSMUSG00000031939	Taf1d	2810003M17Rik|4930553M18Rik|5930426I11Rik|Josd3|TAF(I)41|TAFI41	TATA-box binding protein associated factor, RNA polymerase I, D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131046466-3	chr1	131046229	131046429	+	766.027771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26484.0	NM_010548	16153.0	Mm.874	NM_010548	ENSMUSG00000016529	Il10	CSIF|Il-10	interleukin 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123148564-2	chr5	123148464	123148664	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001040398, exon 6 of 17)	exon (NM_001040398, exon 6 of 17)	6371.0	NM_001040398	208043.0	Mm.250391	NM_177581	ENSMUSG00000038384	Setd1b	AA516740|BC035291|KMT2G|mKIAA1076	SET domain containing 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-70110114-4	chr12	70110021	70110221	+	833.658325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286079, intron 1 of 28)	intron (NM_001286079, intron 1 of 28)	1508.0	NR_104398	18080.0	Mm.244047	NM_008697	ENSMUSG00000021068	Nin	3110068G20Rik|AI385615|AU024711|mKIAA1565	ninein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-96535818-4	chr9	96535668	96535868	+	906.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	-57093.0	NM_001311135	19823.0	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-5801443-4	chr2	5801357	5801557	+	950.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133837, intron 10 of 12)	intron (NM_133837, intron 10 of 12)	-43577.0	NM_016918	53893.0	Mm.251904	NM_016918	ENSMUSG00000025817	Nudt5	-	nudix (nucleoside diphosphate linked moiety X)-type motif 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-106512546-1	chr1	106512446	106512646	+	577.0	f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	34085.0	NR_106164	102466254.0		NR_106164	ENSMUSG00000098344	Mir3473f	Gm27846|mmu-mir-3473f	microRNA 3473f	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-106500858-1	chr14	106500758	106500958	+	662.0	f0_balb.idr	Intergenic	Intergenic	-14338.0	NR_045938	73631.0	Mm.48862	NR_045938	ENSMUSG00000099794	1700128A07Rik	-	RIKEN cDNA 1700128A07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102460015-2	chr12	102459915	102460115	+	704.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-9119.0	NM_001199004	27277.0	Mm.273370	NM_013747	ENSMUSG00000021192	Golga5	Ret-II	golgi autoantigen, golgin subfamily a, 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-40852680-4	chr4	40852587	40852787	+	994.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022305, intron 1 of 5)	intron (NM_022305, intron 1 of 5)	1850.0	NM_022305	14595.0	Mm.15622	NM_022305	ENSMUSG00000028413	B4galt1	B-1,4-GalT|B-1,4-GalT1|GalT|Ggtb|Ggtb2|b4Gal-T1|beta-1,4-GalT|beta-1,4-GalT1|beta4Gal-T1	UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127547660-1	chr10	127547560	127547760	+	818.333313	f1_balb.idr	intron (NM_008512, intron 70 of 88)	RLTR11A2|LTR|ERVK	-13101.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-34929747-4	chr8	34929638	34929838	+	734.241699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175091, intron 2 of 26)	MTD|LTR|ERVL-MaLR	35952.0	NM_175091	21951.0	Mm.88364	NM_175091	ENSMUSG00000031529	Tnks	4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	protein-coding	2.32680834630588	1.45471601715598	1.41279369420657	1.14957102904839	1.78748712297492	2.37280192917506	2.38487632653503	2.11505519362975	1.30589356158856	0.215306901075082	0.705944860566832
Merged-chr6-108688539-4	chr6	108688434	108688634	+	802.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27600.0	NR_104577	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-152104350-2	chr2	152104250	152104450	+	599.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR30D2_MM|LTR|ERV1	-1174.0	NM_029688	76650.0	Mm.218639	NM_029688	ENSMUSG00000032802	Srxn1	1700127B04Rik|AI854065|AW488194|Npn3|Srx|Srx1|TX01	sulfiredoxin 1 homolog (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-116943127-2	chr10	116943027	116943227	+	612.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359645, intron 1 of 10)	B3|SINE|B2	7326.0	NM_001359645	216363.0	Mm.336394	NM_001003950	ENSMUSG00000064181	Rab3ip	B230311A06|Gtpat12|Rabin3	RAB3A interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-116450907-4	chr3	116450798	116450998	+	733.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26866.0	NM_001173553	229776.0	Mm.17647	NM_001080818	ENSMUSG00000033502	Cdc14a	A830059A17Rik|CDC14A2|CDC14a1|Cdc14	CDC14 cell division cycle 14A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-76517718-2	chr5	76517618	76517818	+	829.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB4|LINE|L1	-11589.0	NM_001359372	69940.0	Mm.403233	NM_027270	ENSMUSG00000036435	Exoc1	2810407P21Rik|A730011E05Rik|SEC3|Sec3l1|Sec3p	exocyst complex component 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-24045838-1	chr6	24045738	24045938	+	942.0	f1_c57bl6.idr	Intergenic	RLTR9F|LTR|ERVK	-75778.0	NM_207022	387347.0	Mm.377909	NM_207022	ENSMUSG00000043865	Tas2r118	Gm465|T2R18|Tas2r16|Tas2r18|mGR18|mt2r40	taste receptor, type 2, member 118	protein-coding	-1.18378942727406	-1.15669478905697	-0.457913181653105	-1.17806440097404	-1.18323730008524	-1.15415234459186	-1.16577117532349	-1.17633933179771	-2.81844548480871	0.412768592413622	1
Merged-chr4-3718856-2	chr4	3718705	3718905	+	820.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 1 of 12)	L1MC1|LINE|L1	3841.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	-0.920746059108256	-0.900210136228289	-0.910868657888965	-0.914546390428102	-0.919816208124075	0.187426340199569	-0.909824961773136	-0.913900867410677	3.55267203040657	0.234146038776258	1
Merged-chr16-24507902-4	chr16	24507788	24507988	+	823.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 3 of 12)	intron (NM_178665, intron 3 of 12)	-21426.0	NR_038091	624582.0	Mm.439775	NR_038091		Morf4l1-ps1	A730098P11Rik	mortality factor 4 like 1, pseudogene 1	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-103445627-2	chr12	103445527	103445727	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1947.0	NM_001281830	76933.0	Mm.271275	NM_029803	ENSMUSG00000079017	Ifi27l2a	2310061N23Rik|Ifi27|Isg12|Isg12(b1)	interferon, alpha-inducible protein 27 like 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4066493-7	chr19	4066430	4066630	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-7083.0	NM_001362043	225884.0	Mm.440201	NM_144869	ENSMUSG00000058216	Gstp3	-	glutathione S-transferase pi 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-13964792-4	chr10	13964690	13964890	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1285.0	NM_001358783	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	6.44013671008869	6.6325562936348	6.57919713726498	5.77114813027216	6.18379216753094	6.34431273114145	6.6454315431501	6.43620871158686	0.0206151020211232	0.928668648445893	0.998431161219273
Merged-chr2-27436473-2	chr2	27436373	27436573	+	567.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-5963.0	NM_001360791	100504116.0	Mm.36529	NM_001360790		Brd3os	A230069D13|D2Bwg1423e|Gm20071	bromodomain containing 3, opposite strand	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-98799834-1	chr12	98799734	98799934	+	584.0	f0_balb.idr	intron (NM_001081191, intron 35 of 43)	intron (NM_001081191, intron 35 of 43)	28812.0	NM_001160108	75553.0	Mm.25549	NM_029334	ENSMUSG00000021012	Zc3h14	1010001P15Rik|1700016A15Rik|2700069A02Rik|AU014748	zinc finger CCCH type containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-95196773-2	chr4	95196673	95196873	+	590.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-144551.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-30624442-4	chr14	30624341	30624541	+	815.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011103, intron 1 of 17)	intron (NM_011103, intron 1 of 17)	1767.0	NM_011103	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80745441-2	chr10	80745351	80745551	+	571.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-3176.0	NM_007460	11776.0	Mm.27082	NM_007460	ENSMUSG00000020198	Ap3d1	AA407035|Ap3d|Bolvr|mBLVR1|mh|mocha	adaptor-related protein complex 3, delta 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-8547453-4	chr12	8547341	8547541	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177802, intron 2 of 6)	intron (NM_177802, intron 2 of 6)	-7875.0	NM_001286385	328059.0	Mm.46326	NM_177802	ENSMUSG00000020600	Slc7a15	Arpat	solute carrier family 7 (cationic amino acid transporter, y+ system), member 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-74924255-2	chr11	74924155	74924355	+	658.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_013761, intron 1 of 8)	B2_Mm2|SINE|B2	1543.0	NM_013761	27364.0	Mm.131443	NM_013761	ENSMUSG00000001323	Srr	M100034|Rgsc34|Srs	serine racemase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-43303194-4	chr9	43303110	43303310	+	966.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-7553.0	NM_023655	72169.0	Mm.273277	NM_023655	ENSMUSG00000032013	Trim29	1110047J21Rik|2810431N19Rik|4732461M22Rik|AI119726	tripartite motif-containing 29	protein-coding	3.14309657943873	2.33659385357691	2.80739065802443	2.00870652193449	3.03435386041178	3.6020100504554	2.93536645983662	2.50311054668861	0.766151528226395	0.290012112755647	0.795360911821054
Merged-chr8-70833758-1	chr8	70833658	70833858	+	1000.0	f1_balb.idr	Intergenic	Intergenic	5962.0	NM_027560	70807.0	Mm.24215	NM_027560	ENSMUSG00000002910	Arrdc2	4632416I05Rik|Ilad1	arrestin domain containing 2	protein-coding	2.11465414512419	3.44470424527191	3.56098713480363	2.57557075244096	3.89458660568526	3.8469376670323	3.65786908132149	1.54198507919738	0.70277185388581	0.356541736931034	0.85378439273359
Merged-chr5-72203288-4	chr5	72203180	72203380	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153389)	promoter-TSS (NM_153389)	-49.0	NR_003966	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-37046809-4	chr17	37046615	37046815	+	882.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_019439, exon 2 of 23)	exon (NM_019439, exon 2 of 23)	749.0	NM_019439	54393.0	Mm.32191	NM_019439	ENSMUSG00000024462	Gabbr1	GABAB1|GABAbR1|bM573K1.1	gamma-aminobutyric acid (GABA) B receptor, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128174284-4	chr10	128174200	128174400	+	850.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039080, intron 2 of 13)	intron (NM_001039080, intron 2 of 13)	2268.0	NM_019711	56516.0	Mm.42247	NM_019711	ENSMUSG00000040043	Rbms2	2610315E04Rik|Scr3	RNA binding motif, single stranded interacting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-73554088-4	chr2	73554015	73554215	+	707.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	-24628.0	NM_153138	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-89441535-1	chr10	89441435	89441635	+	569.0	f1_balb.idr	intron (NM_001079876, intron 1 of 10)	ORR1D1|LTR|ERVL-MaLR	2432.0	NM_001284344	237436.0	Mm.11982	NM_001033331	ENSMUSG00000074802	Gas2l3	8430435B07Rik|Gm240	growth arrest-specific 2 like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-43017052-2	chr17	43016945	43017145	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_178589, exon 1 of 6)	exon (NM_178589, exon 1 of 6)	490.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	2.4868210040633	2.99226295524099	1.76499958000278	3.04840486728161	2.15903493812354	2.25513811658055	2.91506277535234	2.98999901972989	-0.0674434118314825	0.932422353828144	0.998431161219273
Merged-chr10-121310954-4	chr10	121310842	121311042	+	867.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_029057, exon 1 of 12)	5' UTR (NM_029057, exon 1 of 12)	454.0	NM_029057	74694.0	Mm.233833	NM_029057	ENSMUSG00000052302	Tbc1d30	4930505D03Rik|9530013E20Rik	TBC1 domain family, member 30	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-35266886-2	chr18	35266786	35266986	+	611.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_030749, exon 10 of 10)	exon (NM_030749, exon 10 of 10)	-51862.0	NM_178005	107065.0	Mm.39900	NM_178005	ENSMUSG00000071862	Lrrtm2	AI851755|BB129880|C630011A14Rik|mKIAA0416	leucine rich repeat transmembrane neuronal 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-102026490-2	chr7	102026388	102026588	+	796.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029211, intron 6 of 8)	intron (NM_029211, intron 6 of 8)	-8333.0	NM_010531	16068.0	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	2.03416901892765	1.52090022637018	1.02457662341272	2.39032220748811	1.9655803152577	1.0535708707093	1.02988950033481	2.25250977065597	-0.39675755524858	0.752214878799043	0.998431161219273
Merged-chr11-11719365-3	chr11	11719261	11719461	+	732.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301865, intron 3 of 6)	intron (NM_001301865, intron 3 of 6)	29184.0	NM_001301863	22778.0	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5796079-4	chr17	5795965	5796165	+	997.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2592.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-8669352-2	chr3	8669252	8669452	+	667.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-2314.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-55855797-4	chr7	55855688	55855888	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164661, intron 2 of 31)	intron (NM_001164661, intron 2 of 31)	13717.0	NM_001164661	20430.0	Mm.37249	NM_011370	ENSMUSG00000030447	Cyfip1	E030028J09Rik|P140SRA-1|P140sra1|Shyc|Sra-1|Sra1|l(7)1Rl|l71Rl|l7Rl1|mKIAA0068|pl-1	cytoplasmic FMR1 interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-6560642-2	chr11	6560542	6560742	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001190344, intron 1 of 9)	intron (NM_001190344, intron 1 of 9)	459.0	NM_001190344	216527.0	Mm.221271	NM_146014	ENSMUSG00000000378	Ccm2	BC029157	cerebral cavernous malformation 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95139758-4	chr3	95139663	95139863	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_106175).2	promoter-TSS (NR_106175).2	-577.0	NR_106175	102465890.0		NR_106175	ENSMUSG00000098498	Mir8099-1	Gm27917|mmu-mir-8099-1	microRNA 8099-1	ncRNA	-0.10129403594322	0.888449436571122	-0.0841680231382033	-0.0905353608562804	-0.0996781901533225	0.903496030457706	-0.0823628092250997	-0.0894170162904303	0.0395142251790123	0.986378381761409	1
Merged-chr19-57404323-4	chr19	57404233	57404433	+	943.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43324.0	NM_145505	226252.0	Mm.358870	NM_145505	ENSMUSG00000033478	Fam160b1	AI450540|mKIAA1600	family with sequence similarity 160, member B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6980058-4	chr19	6979981	6980181	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360288)	promoter-TSS (NM_001360288)	5.0	NM_001360286	14227.0	Mm.4234	NM_008020	ENSMUSG00000056629	Fkbp2	mFKBP13|mFKBP2	FK506 binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117432638-4	chr10	117432528	117432728	+	981.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14807.0	NR_152734	102634600.0	Mm.399106	NR_152734	ENSMUSG00000112344	Gm32141	-	predicted gene, 32141	ncRNA	3.62554798113653	3.98063929264128	4.0968062970136	2.9337438549929	4.07027307404861	3.69866891588022	3.66072526117792	3.62668494453883	0.079649398609025	0.876219909084088	0.998431161219273
Merged-chr4-148038999-4	chr4	148038892	148039092	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010840)	promoter-TSS (NM_010840)	-85.0	NM_010840	17769.0	Mm.89959	NM_010840	ENSMUSG00000029009	Mthfr	AI323986	methylenetetrahydrofolate reductase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-136086625-4	chr3	136086538	136086738	+	889.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033350, intron 10 of 16)	intron (NM_001033350, intron 10 of 16)	239428.0	NM_001310749	242248.0	Mm.30832	NM_001033350	ENSMUSG00000037922	Bank1	A530094C12Rik|AI451642|AVIEF|BANK	B cell scaffold protein with ankyrin repeats 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-97126182-1	chr5	97126082	97126282	+	652.0	f0_balb.idr	Intergenic	Intergenic	-14586.0	NM_001359913	231474.0	Mm.332505	NM_198422	ENSMUSG00000055725	Paqr3	6330415A20Rik|AY424292|RKTG	progestin and adipoQ receptor family member III	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-36767806-4	chr9	36767707	36767907	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008408)	promoter-TSS (NM_008408)	-229.0	NM_008408	16430.0	Mm.2863	NM_008408	ENSMUSG00000032116	Stt3a	AA408947|BB081708|Itm1	STT3, subunit of the oligosaccharyltransferase complex, homolog A (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-48653870-2	chr13	48653770	48653970	+	852.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9166.0	NM_007526	12022.0	Mm.42241	NM_007526	ENSMUSG00000021381	Barx1	-	BarH-like homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-103366118-1	chr15	103366018	103366218	+	841.0	f0_balb.idr	intron (NM_001314041, intron 1 of 30)	CpG	673.0	NM_010577	16402.0	Mm.16234	NM_010577	ENSMUSG00000000555	Itga5	Cd49e|Fnra|VLA5	integrin alpha 5 (fibronectin receptor alpha)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-20868741-4	chr9	20868650	20868850	+	958.841675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_175687, exon 1 of 8)	5' UTR (NM_175687, exon 1 of 8)	108.0	NM_175687	319278.0	Mm.249932	NM_175687	ENSMUSG00000038884	A230050P20Rik	RyDEN	RIKEN cDNA A230050P20 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99139773-2	chr15	99139673	99139873	+	924.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_139140, intron 1 of 12)	intron (NM_139140, intron 1 of 12)	12928.0	NM_139140	72572.0	Mm.276650	NM_139140	ENSMUSG00000051934	Spats2	2700012F11Rik|59kDa|Scr59|p59	spermatogenesis associated, serine-rich 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-84880699-4	chr11	84880606	84880806	+	984.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001077636)	promoter-TSS (NM_001077636)	-421.0	NM_001077636	70325.0	Mm.390414	NM_027388	ENSMUSG00000045140	Pigw	2610044A17Rik|Gwt1	phosphatidylinositol glycan anchor biosynthesis, class W	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-87525001-3	chr6	87524902	87525102	+	859.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037727, intron 1 of 10)	intron (NM_001037727, intron 1 of 10)	8257.0	NM_001037727	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-120189961-4	chr10	120189855	120190055	+	686.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359184, intron 1 of 11)	intron (NM_001359184, intron 1 of 11)	11642.0	NM_028679	73914.0	Mm.146194	NM_028679	ENSMUSG00000020227	Irak3	4833428C18Rik|AI563835|IRAK-M	interleukin-1 receptor-associated kinase 3	protein-coding	1.24840375948234	1.56933497518189	0.902978926934347	1.20266434658534	0.647458002035393	0.695463477982246	1.97387341173619	0.666971509712377	-0.273467437873185	0.854598291056908	0.998431161219273
Merged-chr11-60116143-3	chr11	60116026	60116226	+	959.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009021, intron 1 of 5)	PB1D10|SINE|Alu	11113.0	NM_009021	19377.0	Mm.296366	NM_009021	ENSMUSG00000062115	Rai1	Gt1	retinoic acid induced 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-40976392-2	chr13	40976292	40976492	+	561.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_155347, intron 1 of 4)	MLTR11B|LTR|ERVK	-24618.0	NM_026550	68083.0	Mm.24789	NM_026550	ENSMUSG00000038683	Pak1ip1	5830431I15Rik|5930415H02Rik|AA419825|AI314040|AW556169|Gdpd1|PIP1	PAK1 interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-103629634-4	chr5	103629550	103629750	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029415)	promoter-TSS (NM_029415)	-247.0	NM_029415	75750.0	Mm.7446	NM_029415	ENSMUSG00000029321	Slc10a6	8430417G17Rik|C78479|Soat	solute carrier family 10 (sodium/bile acid cotransporter family), member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-119105908-4	chr4	119105815	119106015	+	999.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2830.0	NM_011400	20525.0	Mm.21002	NM_011400	ENSMUSG00000028645	Slc2a1	Glut-1|Glut1	solute carrier family 2 (facilitated glucose transporter), member 1	protein-coding	3.19893435470488	3.78318295227335	4.28680516317583	4.07385994217983	3.22718583679739	3.17720197040626	4.36611561179126	4.24397641802335	-0.0314588672479801	0.953002032377641	0.998431161219273
Merged-chr6-116153883-2	chr6	116153783	116153983	+	595.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177412, intron 1 of 5)	intron (NM_177412, intron 1 of 5)	39491.0	NM_177412	330401.0	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-88042929-2	chr6	88042829	88043029	+	859.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001293652, intron 1 of 7)	B4|SINE|B4	2088.0	NM_001293653	19349.0	Mm.333233	NM_009005	ENSMUSG00000079477	Rab7	Rab7a	RAB7, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-146281687-2	chr6	146281587	146281787	+	779.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019923, intron 37 of 56)	ORR1E|LTR|ERVL-MaLR	220536.0	NM_010586	16439.0	Mm.7800	NM_010586	ENSMUSG00000030287	Itpr2	AI649341|InsP3R-2|InsP3R-5|Ip3r2|Itpr5|insP3R2	inositol 1,4,5-triphosphate receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-92573354-1	chr16	92573254	92573454	+	938.0	f1_c57bl6.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	75207.0	NM_172469	209195.0	Mm.44747	NM_172469	ENSMUSG00000022949	Clic6	5730466J16Rik|AL022908|AW045520|CLIC1L	chloride intracellular channel 6	protein-coding	-0.187376847088169	-0.557306077083694	-0.561137702054906	0.16326299296666	-0.568271233295081	-0.556442370386504	-0.560292612999368	-0.563577436894911	-3.44696954513383	0.20848685874555	1
Merged-chr8-115600020-4	chr8	115599912	115600112	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	106882.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-51219312-1	chr14	51219212	51219412	+	579.0	f0_balb.idr	Intergenic	MLTR25A|LTR|ERVK	15617.0	NM_017389	503847.0	Mm.377124	NM_017389	ENSMUSG00000050766	Ear14	-	eosinophil-associated, ribonuclease A family, member 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-100570121-4	chr9	100570009	100570209	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001101483, intron 1 of 1)	intron (NM_001101483, intron 1 of 1)	976.0	NM_001101483	245020.0	Mm.236289	NM_001101483	ENSMUSG00000070287	Slc35g2	Gm519|Tmem22	solute carrier family 35, member G2	protein-coding	-1.23460850737911	-1.20778397121128	-0.764630119593346	-1.22720560894177	-1.23414887269344	-1.20547328650897	-1.04825763330377	-1.22563779064292	-1.35544360464281	0.683796689557226	1
Merged-chr16-30058092-2	chr16	30057992	30058192	+	591.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1A|DNA|hAT-Charlie	-7265.0	NM_008235	15205.0	Mm.390859	NM_008235	ENSMUSG00000022528	Hes1	Hry|bHLHb39	hes family bHLH transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-115317161-4	chr6	115317077	115317277	+	900.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43774.0	NM_001127330	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83795771-4	chr6	83795660	83795860	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164187, intron 1 of 9)	intron (NM_001164187, intron 1 of 9)	602.0	NM_001164187	56174.0	Mm.190650	NM_019542	ENSMUSG00000034744	Nagk	Gnk	N-acetylglucosamine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-25333880-1	chr10	25333780	25333980	+	619.0	f1_balb.idr	Intergenic	Intergenic	-25918.0	NM_001358754	13822.0	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-45266420-4	chr13	45266309	45266509	+	997.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-123333.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	4.0427214365787	3.25590956311976	5.02457376853077	4.53642954963801	4.47626942682003	4.91514401312444	3.51693095120578	4.27307924943449	0.0202384505210525	0.966988990531444	0.998431161219273
Merged-chr8-71284437-3	chr8	71284345	71284545	+	841.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142322, intron 1 of 39)	intron (NM_001142322, intron 1 of 39)	11731.0	NM_001142323	17925.0	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	0.919195487588554	0.54864026727775	0.525787545240808	0.507379217118531	1.10104698502076	0.553646600292803	1.54772997075494	2.68445172316217	3.97001098128334	0.0121382230423092	0.125115463970469
Merged-chr12-55474829-1	chr12	55474729	55474929	+	656.333313	f0_balb.idr	Intergenic	Intergenic	17818.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-139037318-4	chr1	139037221	139037421	+	899.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166501, intron 3 of 21)	intron (NM_001166501, intron 3 of 21)	59664.0	NR_108103	78229.0	Mm.437838	NR_108103	ENSMUSG00000104900	4930596I21Rik	-	RIKEN cDNA 4930596I21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-88854713-2	chr15	88854613	88854813	+	818.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7481.0	NM_145478	223775.0	Mm.400129	NM_145478	ENSMUSG00000035828	Pim3	BC026639|Kid1	proviral integration site 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124479688-2	chr6	124479588	124479788	+	770.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13425.0	NM_181344	232371.0	Mm.132974	NM_181344	ENSMUSG00000038527	C1rl	C1r-LP|C1rl1|C1rlp	complement component 1, r subcomponent-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-129745048-2	chr3	129744948	129745148	+	829.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010113, intron 1 of 23)	intron (NM_010113, intron 1 of 23)	-8710.0	NR_040589	319224.0	Mm.477035	NR_040589	ENSMUSG00000105960	6330410L21Rik	-	RIKEN cDNA 6330410L21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-56591600-2	chr19	56591500	56591700	+	706.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_025811, exon 7 of 11)	exon (NM_025811, exon 7 of 11)	43339.0	NM_025811	66866.0	Mm.46346	NM_025811	ENSMUSG00000025078	Nhlrc2	1200003G01Rik|AI835049|AV002846|AW496455	NHL repeat containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135354231-2	chr4	135354131	135354331	+	679.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-1017.0	NM_001130477	51796.0	Mm.1963	NM_016799	ENSMUSG00000028809	Srrm1	AA407769|POP101|Srm160	serine/arginine repetitive matrix 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-120425028-4	chr2	120424939	120425139	+	995.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172672, intron 6 of 23)	intron (NM_172672, intron 6 of 23)	-20923.0	NM_001110496	211499.0	Mm.260712	NM_173734	ENSMUSG00000033808	Tmem87a	A930025J12Rik	transmembrane protein 87A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19665025-4	chr7	19664929	19665129	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019649)	promoter-TSS (NM_019649)	1.0	NM_019649	56457.0	Mm.290960	NM_019649	ENSMUSG00000002981	Clptm1	HS9|N14	cleft lip and palate associated transmembrane protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117569618-2	chr8	117569518	117569718	+	730.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_172285, intron 7 of 32)	intron (NM_172285, intron 7 of 32)	71343.0	NM_172285	234779.0	Mm.192699	NM_172285	ENSMUSG00000034330	Plcg2	PLC-gamma-2|PLCgamma2|Plcg-2	phospholipase C, gamma 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-24750870-4	chr5	24750766	24750966	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_153076)	TTS (NM_153076)	6977.0	NM_153076	214301.0	Mm.63484	NM_153076	ENSMUSG00000038135	Crygn	-	crystallin, gamma N	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-68667867-4	chr7	68667762	68667962	+	877.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49406.0	NR_003648	384639.0	Mm.261760	NM_001013781		Gm5334	EG384639	tetraspanin 7 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99448158-2	chr7	99448058	99448258	+	822.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001362166, exon 9 of 19)	exon (NM_001362166, exon 9 of 19)	-17846.0	NM_028145	72184.0	Mm.153585	NM_028145	ENSMUSG00000035298	Klhl35	2810406K13Rik	kelch-like 35	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-62492817-2	chr10	62492717	62492917	+	717.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-6012.0	NM_001358543	30930.0	Mm.260703	NM_133672	ENSMUSG00000020078	Vps26a	AA407240|HB58|Vps26	VPS26 retromer complex component A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-76406515-2	chr2	76406415	76406615	+	958.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145525)	promoter-TSS (NM_145525)	7.0	NM_001290733	99031.0	Mm.240435	NM_145525	ENSMUSG00000042359	Osbpl6	1110062M20Rik|AI596402|ORP-6|mKIAA4128	oxysterol binding protein-like 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80837932-4	chr7	80837831	80838031	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24177.0	NM_009553	22691.0	Mm.358645	NM_009553	ENSMUSG00000038797	Zscan2	Zfp-29|Zfp29	zinc finger and SCAN domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83322133-4	chr6	83322028	83322228	+	985.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-3911.0	NM_145571	232157.0	Mm.29500	NM_145571	ENSMUSG00000043131	Mob1a	4022402H07Rik|MOB1|MOB4B|Mobk1b|Mobkl1b	MOB kinase activator 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-44831055-2	chr16	44830955	44831155	+	807.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_207244, intron 1 of 5)	intron (NM_207244, intron 1 of 5)	10327.0	NM_207244	239849.0	Mm.445045	NM_207244	ENSMUSG00000062082	Cd200r4	F630107N04Rik|MCD200RLa	CD200 receptor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128036095-3	chr10	128035994	128036194	+	953.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013608, intron 1 of 7)	CpG	748.0	NM_001113199	17938.0	Mm.3746	NM_013608	ENSMUSG00000061315	Naca	AL022831|AL024382|Gm1878|mKIAA0363|skNAC	nascent polypeptide-associated complex alpha polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-143468654-2	chr5	143468554	143468754	+	754.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_144915, intron 2 of 14)	B1_Mur4|SINE|Alu	4161.0	NM_144915	231871.0	Mm.469963	NM_144915	ENSMUSG00000039206	Daglb	E330036I19Rik	diacylglycerol lipase, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-89074854-2	chr15	89074754	89074954	+	688.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_040417, intron 1 of 3)	intron (NR_040417, intron 1 of 3)	1000.0	NR_040417	69120.0	Mm.276391	NR_040417	ENSMUSG00000087331	1810021B22Rik	-	RIKEN cDNA 1810021B22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-108848374-4	chr9	108848285	108848485	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359572, intron 34 of 35)	intron (NM_001359572, intron 34 of 35)	-5658.0	NM_134420	171429.0	Mm.45201	NM_134420	ENSMUSG00000023259	Slc26a6	B930010B04Rik|CFEX|Pat-1|Pat1	solute carrier family 26, member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5242726-2	chr17	5242626	5242826	+	664.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 4 of 19)	intron (NM_001085355, intron 4 of 19)	176041.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46317987-2	chr19	46317983	46318183	+	843.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_028627, intron 11 of 17)	CpG	8783.0	NM_001347454	73728.0	Mm.268532	NM_028627	ENSMUSG00000037126	Psd	1110007H17Rik|A930015K15|Efa6|Efa6a|Psdl|mKIAA2011	pleckstrin and Sec7 domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141363649-4	chr7	141363590	141363790	+	795.729187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_133191)	TTS (NM_133191)	1420.0	NR_033532	320871.0	Mm.475463	NM_177280	ENSMUSG00000086844	B230206H07Rik	-	RIKEN cDNA B230206H07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-4908344-4	chr18	4908240	4908440	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	95854.0	NR_045881	100038439.0	Mm.387569	NR_045881	ENSMUSG00000097043	Gm10556	-	predicted gene 10556	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-52138328-3	chr5	52138229	52138429	+	865.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2312.0	NR_105845	102466648.0		NR_105845	ENSMUSG00000098726	Mir6417	Gm27334|mmu-mir-6417	microRNA 6417	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-105203978-2	chr13	105203861	105204061	+	828.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360891, intron 5 of 7)	intron (NM_001360891, intron 5 of 7)	89053.0	NM_027934	71816.0	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	0.497771738510314	-0.237291899137542	0.461311302404265	-0.246575692328203	-0.252321452814084	-0.23611504446056	-0.241368878478686	-0.245867116025295	-3.86430692559189	0.119202304761532	1
Merged-chr2-26507000-1	chr2	26506900	26507100	+	558.0	f1_balb.idr	Intergenic	Intergenic	3073.0	NR_132655	102639736.0		NR_132655		Gm35978	-	predicted gene, 35978	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-83997036-4	chr8	83996935	83997135	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081415)	promoter-TSS (NM_001081415)	-637.0	NM_001081415	666704.0	Mm.298091	NM_001081415	ENSMUSG00000079003	Samd1	AA589507	sterile alpha motif domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-12318902-3	chr2	12318824	12319024	+	967.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16980.0	NM_001001309	241226.0	Mm.329997	NM_001001309	ENSMUSG00000026768	Itga8	AI447669	integrin alpha 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-87824624-4	chr1	87824525	87824725	+	903.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009118, intron 9 of 15)	intron (NM_009118, intron 9 of 15)	20945.0	NM_009118	20215.0	Mm.1276	NM_009118	ENSMUSG00000056055	Sag	A930001K18Rik|Arr1|Irbp|arrestin	S-antigen, retina and pineal gland (arrestin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-130989535-2	chr1	130989435	130989635	+	586.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30310.0	NM_010548	16153.0	Mm.874	NM_010548	ENSMUSG00000016529	Il10	CSIF|Il-10	interleukin 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6237193-2	chr19	6237093	6237293	+	810.474976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1353.0	NM_198168	225849.0	Mm.118076	NM_198168	ENSMUSG00000024777	Ppp2r5b	B'beta|BC026670	protein phosphatase 2, regulatory subunit B', beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-29290274-4	chr5	29290185	29290385	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020295, intron 8 of 16)	intron (NM_020295, intron 8 of 16)	88105.0	NM_020295	56873.0	Mm.41572	NM_020295	ENSMUSG00000010721	Lmbr1	1110048D14Rik|AU017641	limb region 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-70923545-2	chr9	70923445	70923645	+	543.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001324473, intron 1 of 8)	intron (NM_001324473, intron 1 of 8)	11263.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-54780897-2	chr15	54780797	54780997	+	824.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34969.0	NM_010930	18133.0	Mm.5167	NM_010930	ENSMUSG00000037362	Nov	C130088N23Rik|CCN3	nephroblastoma overexpressed gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-24799530-2	chr13	24799430	24799630	+	938.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-2127.0	NM_024473	79555.0	Mm.266668	NM_024473	ENSMUSG00000019132	BC005537	8030460C05Rik|C78201	cDNA sequence BC005537	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-13278733-4	chr7	13278634	13278834	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010715)	promoter-TSS (NM_010715)	-13.0	NM_177312	321008.0	Mm.458832	NM_177312	ENSMUSG00000070814	Zswim9	6330408A02Rik	zinc finger SWIM-type containing 9	protein-coding	6.15407010246959	5.53761290209685	5.27753810577668	5.69389870953061	6.2190918689765	5.60414221799457	5.47407562594857	5.71799110035287	0.0892391854613131	0.754602108840675	0.998431161219273
Merged-chr14-73106535-4	chr14	73106441	73106641	+	830.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35969.0	NM_001170694	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118610242-4	chr9	118610113	118610313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 1 of 27)	intron (NM_133721, intron 1 of 27)	3504.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	3.56747300247483	3.04704361789554	2.38303222111114	3.69228641005744	3.09647847049816	3.28167196093412	2.71713358601157	3.07760884898993	-0.372308305118748	0.560291565475026	0.960321604678676
Merged-chr2-83625826-4	chr2	83625723	83625923	+	911.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18755.0	NM_026934	69082.0	Mm.27804	NM_026934	ENSMUSG00000027091	Zc3h15	1700006A17Rik|1810012H02Rik|2610312B22Rik|FM22|Ierepo4	zinc finger CCCH-type containing 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-122613808-2	chr10	122613708	122613908	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34531.0	NR_105839	102465223.0		NR_105839	ENSMUSG00000098522	Mir6412	Gm27364|mmu-mir-6412	microRNA 6412	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-50826341-4	chr15	50826248	50826448	+	996.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310481, intron 3 of 5)	L1MEg|LINE|L1	62701.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	2.08412713094178	2.64258718352973	3.69663108860893	1.37020031583108	2.96753571713544	2.20250771584055	2.57011190441151	2.4867332173654	-0.306894248000019	0.727853631089709	0.998431161219273
Merged-chr16-38431764-2	chr16	38431664	38431864	+	695.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_134102, intron 1 of 10)	intron (NM_134102, intron 1 of 10)	1381.0	NM_134102	85031.0	Mm.279805	NM_134102	ENSMUSG00000002847	Pla1a	AA986889|Ps-pla1|Pspla1	phospholipase A1 member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127635252-4	chr10	127635149	127635349	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-7737.0	NM_009284	20852.0	Mm.121721	NM_009284	ENSMUSG00000002147	Stat6	-	signal transducer and activator of transcription 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-25187116-2	chr17	25187016	25187216	+	732.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_183150, exon 2 of 2)	3' UTR (NM_183150, exon 2 of 2)	-1281.0	NM_001357877	74154.0	Mm.267353	NM_028789	ENSMUSG00000015127	Unkl	1300004G08Rik	unkempt family like zinc finger	protein-coding	0.0261505257092962	-0.279261918530571	0.101585147561869	-0.284574317712208	-0.0601687236282572	-0.278577338261544	-0.129761545208265	-0.28417435318943	-1.00395914470796	0.670033455010094	1
Merged-chr1-45927138-2	chr1	45927038	45927238	+	766.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1544.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47884973-1	chr17	47884873	47885073	+	624.0	f1_c57bl6.idr	intron (NM_028767, intron 3 of 16)	ID_B1|SINE|B4	39659.0	NM_028767	74123.0	Mm.240062	NM_028767	ENSMUSG00000023991	Foxp4	1200010K03Rik|2310007G05Rik|mFKHLA	forkhead box P4	protein-coding	1.47306705823497	1.03097497027161	2.08338429464466	0.993095611594413	1.33951096363946	2.36274546136491	1.99949778262023	1.56342534394327	1.15972782795448	0.330171440255074	0.83197671091297
Merged-chr4-34959663-4	chr4	34959546	34959746	+	928.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178061, intron 3 of 3)	intron (NM_178061, intron 3 of 3)	-48165.0	NR_040652	73696.0	Mm.1361	NR_040652	ENSMUSG00000085824	Platr9	2410114N07Rik	pluripotency associated transcript 9	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-66862557-4	chr8	66862479	66862679	+	854.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163564, intron 1 of 7)	intron (NM_001163564, intron 1 of 7)	2362.0	NM_001163564	234344.0	Mm.334561	NM_001163564	ENSMUSG00000014907	Naf1	Gm174	nuclear assembly factor 1 ribonucleoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100851143-2	chr11	100851043	100851243	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113563)	promoter-TSS (NM_001113563)	-558.0	NM_001113563	20851.0	Mm.34064	NM_011489	ENSMUSG00000020919	Stat5b	-	signal transducer and activator of transcription 5B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124114782-2	chr5	124114682	124114882	+	795.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_025671, exon 7 of 7)	exon (NM_025671, exon 7 of 7)	-1326.0	NM_144509	65105.0	Mm.29430	NM_144509	ENSMUSG00000029404	Arl6ip4	AA408210|AA408365|Aip-4|Srp25	ADP-ribosylation factor-like 6 interacting protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31192663-2	chr14	31192563	31192763	+	930.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347583, intron 3 of 13)	intron (NM_001347583, intron 3 of 13)	14163.0	NM_022656	64652.0	Mm.298728	NM_022656	ENSMUSG00000021910	Nisch	1200007D05Rik|3202002H23Rik|AW494485|I-1|edsn	nischarin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-7866663-2	chr9	7866563	7866763	+	738.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007464, intron 1 of 8)	intron (NM_007464, intron 1 of 8)	6507.0	NM_007464	11796.0	Mm.2026	NM_007464	ENSMUSG00000032000	Birc3	AW107670|Api1|Api2|Birc2|C-IAP2|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF49|cIAP-1|cIAP-2|cIAP1|cIAP2	baculoviral IAP repeat-containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-58017590-2	chr15	58017490	58017690	+	684.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16704.0	NM_029418	75758.0	Mm.455792	NM_029418	ENSMUSG00000101892	9130401M01Rik	AI849328	RIKEN cDNA 9130401M01 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-97876264-4	chr3	97876169	97876369	+	903.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039376, intron 1 of 46)	intron (NM_001039376, intron 1 of 46)	12438.0	NM_001289702	83679.0	Mm.129840	NM_031401	ENSMUSG00000038170	Pde4dip	4732458A06Rik|9430063L05Rik|C87016|D130016K21Rik|D3Bwg1078e|Usmg4|mKIAA0454	phosphodiesterase 4D interacting protein (myomegalin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132976297-5	chr4	132976208	132976408	+	795.733337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010208, intron 1 of 12)	(TC)n|Simple_repeat|Simple_repeat	2213.0	NM_010208	14191.0	Mm.271665	NM_010208	ENSMUSG00000028874	Fgr	-	FGR proto-oncogene, Src family tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-29497256-4	chr11	29497154	29497354	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176841, intron 25 of 31)	intron (NM_176841, intron 25 of 31)	17779.0	NM_026465	67939.0	Mm.251087	NM_026465	ENSMUSG00000032673	Prorsd1	2010316F05Rik|Ncrna00117|Prdxdd1	prolyl-tRNA synthetase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-27332383-3	chr7	27332279	27332479	+	752.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175641, intron 4 of 32)	intron (NM_175641, intron 4 of 32)	1269.0	NM_001113549	108075.0	Mm.272251	NM_175641	ENSMUSG00000040488	Ltbp4	2310046A13Rik	latent transforming growth factor beta binding protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-116082896-2	chr9	116082796	116082996	+	594.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	92467.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	-0.0645381136492468	-0.412167647703015	-0.415870800230733	-0.418718423350789	0.20295473705085	-0.411330998143122	-0.415055231259612	-0.258667423837804	1.26349592255372	0.623746030583197	1
Merged-chr16-18419607-4	chr16	18419506	18419706	+	769.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007744, intron 1 of 4)	B4A|SINE|B4	-6112.0	NM_001111063	12846.0	Mm.100940	NM_007744	ENSMUSG00000000326	Comt	Comt1|D16Wsu103e|D330014B15Rik	catechol-O-methyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-52450878-3	chr8	52450784	52450984	+	609.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	94273.0	NR_151738	330767.0	Mm.246790	NR_151738	ENSMUSG00000110013	1190028D05Rik	-	RIKEN cDNA 1190028D05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85947336-4	chr12	85947210	85947410	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347395, intron 28 of 32)	intron (NM_001347395, intron 28 of 32)	122360.0	NM_001081423	320244.0	Mm.132172	NM_177114	ENSMUSG00000012609	Ttll5	1700048H13Rik|2310009M18Rik|4930556H18Rik|AI428864|D630041K24Rik|R75373|Stamp|mKIAA0998	tubulin tyrosine ligase-like family, member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56167453-2	chr17	56167353	56167553	+	842.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025566, intron 1 of 1)	intron (NM_025566, intron 1 of 1)	4962.0	NM_025566	66443.0	Mm.2312	NM_025566	ENSMUSG00000044469	Tnfaip8l1	2600017J23Rik|TIPE1	tumor necrosis factor, alpha-induced protein 8-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-116077667-4	chr12	116077564	116077764	+	869.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009511)	promoter-TSS (NM_009511)	-62.0	NM_009511	22355.0	Mm.395245	NM_009511	ENSMUSG00000011171	Vipr2	VPAC2|VPAC2R|Vip2	vasoactive intestinal peptide receptor 2	protein-coding	0.453078445508812	1.3245252059453	0.508916182308439	0.296584370847404	0.286180345834615	0.541204993958691	1.07512472566207	0.297859539357938	-0.614185261028716	0.727995859602558	1
Merged-chr6-82916062-3	chr6	82915952	82916152	+	632.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001308374, intron 11 of 12)	B3|SINE|B2	23717.0	NM_001308374	20355.0	Mm.270543	NM_011350	ENSMUSG00000000627	Sema4f	Sema W	sema domain, immunoglobulin domain (Ig), TM domain, and short cytoplasmic domain	protein-coding	0.515320077385404	0.262957992584773	0.256121508049644	0.981571049488415	0.635108589575374	0.26449636399885	0.846484949572674	0.251757735155512	-0.112355429547079	0.95342497809475	1
Merged-chr11-53859302-4	chr11	53859203	53859403	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033332)	promoter-TSS (NR_033332)	-47.0	NR_033332	622459.0	Mm.479656	NR_033332	ENSMUSG00000081769	Gm12216	602-19-115	predicted gene 12216	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-102663633-3	chr13	102663541	102663741	+	723.277771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29906.0	NM_001360519	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70574563-2	chr14	70574463	70574663	+	592.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3261.0	NM_153136	213484.0	Mm.34191	NM_153136	ENSMUSG00000045211	Nudt18	BC036718	nudix (nucleoside diphosphate linked moiety X)-type motif 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-78635489-3	chr16	78635381	78635581	+	869.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58793.0	NM_025967	67102.0	Mm.37332	NM_025967	ENSMUSG00000022864	D16Ertd472e	1700010I10Rik|2310009O17Rik|E330003K22Rik|Eurl	DNA segment, Chr 16, ERATO Doi 472, expressed	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-90069239-2	chr3	90069139	90069339	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_030543)	promoter-TSS (NR_030543)	-781.0	NR_030543	100124481.0		NR_030543	ENSMUSG00000077996	Mir190b	Mirn190b|mir-190b	microRNA 190b	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-99299486-4	chr13	99299457	99299657	+	634.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45121.0	NM_026873	68927.0	Mm.276502	NM_026873	ENSMUSG00000021650	Ptcd2	1190005P08Rik	pentatricopeptide repeat domain 2	protein-coding	0.0778345438906927	0.425803757157788	0.087998466636095	0.483375842884195	0.530500257396049	0.094110096696378	0.0890960915830037	0.489010712607586	0.276932235818574	0.893954299417835	1
Merged-chr12-70471557-4	chr12	70471471	70471671	+	970.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_037248, intron 2 of 4)	intron (NR_037248, intron 2 of 4)	18417.0	NM_028339	72736.0	Mm.204670	NM_028339	ENSMUSG00000021072	Tmx1	2810425A04Rik|AI465319|Txndc1	thioredoxin-related transmembrane protein 1	protein-coding	1.72530715852441	1.14961757445597	1.12469876440828	2.4786503351823	2.29626847151992	1.95912241208001	2.13479887467269	1.52924962698484	0.636948347372151	0.571073257508955	0.962868434236805
Merged-chr17-31116101-2	chr17	31116001	31116201	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009593, exon 15 of 15)	3' UTR (NM_009593, exon 15 of 15)	13510.0	NM_011575	21786.0	Mm.4641	NM_011575	ENSMUSG00000024029	Tff3	ITF|mITF	trefoil factor 3, intestinal	protein-coding	0.24177144479347	-0.118583448800051	-0.123592920502604	-0.127458258771554	0.663057147643515	-0.117454278795502	-0.122488009192063	0.181618053042138	1.7765041330274	0.44783928032038	1
Merged-chr1-88700504-7	chr1	88700388	88700588	+	976.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177305, exon 1 of 1)	3' UTR (NM_177305, exon 1 of 1)	1703.0	NM_177305	320982.0	Mm.27968	NM_177305	ENSMUSG00000049866	Arl4c	A630084M22Rik|Arl7|LAK	ADP-ribosylation factor-like 4C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-45489610-2	chr9	45489506	45489706	+	589.333374	f0_c57.idr|f1_c57bl6.idr	intron (NM_001081270, intron 3 of 32)	MTD|LTR|ERVL-MaLR	-58374.0	NR_040732	74602.0	Mm.394117	NR_040732	ENSMUSG00000097074	4833428L15Rik	-	RIKEN cDNA 4833428L15 gene	ncRNA	1.13866426998313	3.26476916903888	2.78875007573805	2.9997600601013	1.40183536490744	2.20407334697275	1.75989622004955	1.88902733479517	-1.97588976386609	0.0414956902534171	0.291262846135237
Merged-chr15-78210480-2	chr15	78210380	78210580	+	546.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4080.0	NM_013645	19293.0	Mm.2766	NM_013645	ENSMUSG00000005716	Pvalb	PV|Parv|Pva	parvalbumin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-20631444-4	chr11	20631344	20631544	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001038625)	promoter-TSS (NM_001038625)	-533.0	NM_001038625	58172.0	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-8728450-2	chr10	8728350	8728550	+	577.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 18 of 19)	intron (NM_175155, intron 18 of 19)	157620.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-136148128-2	chr1	136148028	136148228	+	776.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039472, intron 5 of 34)	intron (NM_001039472, intron 5 of 34)	16738.0	NR_153829	16565.0	Mm.276135	NM_019962	ENSMUSG00000041642	Kif21b	2610511N21Rik|mKIAA0449	kinesin family member 21B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-83939514-3	chr12	83939400	83939600	+	867.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11108.0	NM_023633	71952.0	Mm.251483	NM_023633	ENSMUSG00000046791	Riox1	2410016O06Rik|MAPJD|NO66	ribosomal oxygenase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-152832604-2	chr2	152832504	152832704	+	919.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009743)	promoter-TSS (NM_009743)	-876.0	NM_009743	12048.0	Mm.238213	NM_009743	ENSMUSG00000007659	Bcl2l1	Bcl(X)L|Bcl-XL|Bcl2l|BclX|bcl-x|bcl2-L-1	BCL2-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-24165737-4	chr16	24165642	24165842	+	960.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-83052.0	NR_155457	108168278.0	Mm.417246	NR_155457		Gm46545	-	predicted gene, 46545	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-5863045-2	chr13	5862945	5863145	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011803, intron 1 of 3)	intron (NM_011803, intron 1 of 3)	1556.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-81514667-2	chr16	81514567	81514767	+	639.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113208, intron 10 of 17)	intron (NM_001113208, intron 10 of 17)	313970.0	NM_010954	17968.0	Mm.433941	NM_010954	ENSMUSG00000022762	Ncam2	Ncam-2|Ocam|RNCAM	neural cell adhesion molecule 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-125413521-1	chr8	125413421	125413621	+	596.0	f1_balb.idr	Intergenic	L1MB2|LINE|L1	79312.0	NM_001081337	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	2.40815019021996	1.41358505372976	2.82655619575228	3.05923750433162	2.32067670476651	1.42325928500566	3.48057346663058	2.44639141679098	0.133868274465585	0.886958652102844	0.998431161219273
Merged-chr18-82914994-3	chr18	82914912	82915112	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177464, intron 1 of 5)	intron (NM_001177464, intron 1 of 5)	380.0	NM_001177464	329003.0	Mm.326526	NM_183033	ENSMUSG00000058881	Zfp516	C330029B10Rik|D230016L03|Zfp26l|Znf516|mKIAA0222	zinc finger protein 516	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-31217624-4	chr6	31217452	31217652	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110469, intron 1 of 3)	C-rich|Low_complexity|Low_complexity	922.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-100574572-4	chr5	100574472	100574672	+	960.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-2367.0	NM_139198	231507.0	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-95852410-5	chr11	95852288	95852488	+	908.2333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6429.0	NR_045187	73906.0	Mm.399894	NR_045187	ENSMUSG00000086015	4833417C18Rik	-	RIKEN cDNA 4833417C18 gene	ncRNA	-1.06997269762433	-1.30473905204845	-1.3145270772132	-1.32256725251374	-1.06385251204029	-1.30261794616352	-1.3123112828633	-1.32112806497905	0.0394047164033882	0.991001358494878	1
Merged-chr5-105056697-3	chr5	105056573	105056773	+	587.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3112.0	NM_029509	76074.0	Mm.458519	NM_029509	ENSMUSG00000034438	Gbp8	5830443L24Rik|mGBP8	guanylate-binding protein 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-59189338-4	chr4	59189187	59189387	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011673)	promoter-TSS (NM_011673)	-263.0	NM_011673	22234.0	Mm.198803	NM_011673	ENSMUSG00000028381	Ugcg	AU043821|C80537|Epcs21|GlcT-1|Ugcgl	UDP-glucose ceramide glucosyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-139575448-4	chr4	139575431	139575631	+	975.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001205173, exon 1 of 9)	exon (NM_001205173, exon 1 of 9)	811.0	NM_001205173	212632.0	Mm.30464	NM_183148	ENSMUSG00000041025	Iffo2	C79267	intermediate filament family orphan 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91796447-2	chr16	91796347	91796547	+	749.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110276, intron 5 of 15)	ORR1B1|LTR|ERVL-MaLR	67076.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127104167-2	chr10	127104067	127104267	+	666.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177614, intron 5 of 13)	intron (NM_177614, intron 5 of 13)	16993.0	NM_177614	216440.0	Mm.295246	NM_177614	ENSMUSG00000040462	Os9	4632413K17Rik|AU022351	amplified in osteosarcoma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28730908-2	chr17	28730808	28731008	+	572.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001168508, intron 8 of 11)	MTE-int|LTR|ERVL-MaLR	38340.0	NM_001357724	26416.0	Mm.311337	NM_011951	ENSMUSG00000053436	Mapk14	CSBP2|Crk1|Csbp1|Mxi2|PRKM14|PRKM15|p38|p38-alpha|p38MAPK|p38a|p38alpha	mitogen-activated protein kinase 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88412787-2	chr3	88412687	88412887	+	853.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_178696, exon 4 of 4)	exon (NM_178696, exon 4 of 4)	-2390.0	NM_025928	67037.0	Mm.36715	NM_025928	ENSMUSG00000028066	Pmf1	2600009M07Rik|AL033286|AW060657	polyamine-modulated factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-72580584-3	chr5	72580500	72580700	+	974.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_174877, exon 1 of 4)	exon (NM_174877, exon 1 of 4)	484.0	NM_174877	317755.0	Mm.11934	NM_174877	ENSMUSG00000063935	Zar1	-	zygote arrest 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81290043-2	chr10	81289943	81290143	+	980.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001282095, intron 1 of 20)	intron (NM_001282095, intron 1 of 20)	1224.0	NM_013769	27375.0	Mm.27984	NM_013769	ENSMUSG00000034917	Tjp3	-	tight junction protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-117517440-4	chr12	117517338	117517538	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175930, intron 1 of 27)	MLT1B|LTR|ERVL-MaLR	959.0	NM_175930	217944.0	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-58693884-2	chr1	58693797	58693997	+	701.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_175370, intron 1 of 14)	intron (NM_175370, intron 1 of 14)	-1452.0	NM_001347056	108812.0	Mm.442063	NM_175370	ENSMUSG00000047528	Als2cr12	4933405P16Rik|4933425F06Rik	amyotrophic lateral sclerosis 2 chromosome region 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-88513421-2	chr15	88513321	88513521	+	828.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-86881.0	NM_027306	70073.0	Mm.45306	NM_027306	ENSMUSG00000054117	Zdhhc25	1700030J15Rik	zinc finger, DHHC domain containing 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-13056954-2	chr7	13056854	13057054	+	728.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE-int|LTR|ERVL-MaLR	-2190.0	NM_145819	109889.0	Mm.10103	NM_145819	ENSMUSG00000030380	Mzf1	Mzf-2|Mzf2|Zfp121|Zfp98|Znf42	myeloid zinc finger 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-58306624-4	chr13	58306529	58306729	+	792.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175214, intron 12 of 16)	L1MB8|LINE|L1	6520.0	NR_105788	102465191.0		NR_105788	ENSMUSG00000098258	Mir6369	Gm27615|mmu-mir-6369	microRNA 6369	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-110851533-3	chr12	110851414	110851614	+	790.966675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028365, intron 1 of 7)	intron (NM_028365, intron 1 of 7)	1235.0	NM_028365	72805.0	Mm.443524	NM_028365	ENSMUSG00000021271	Zfp839	2810455K09Rik	zinc finger protein 839	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-88310947-1	chr7	88310847	88311047	+	700.0	f0_balb.idr	3' UTR (NM_009982, exon 7 of 7)	3' UTR (NM_009982, exon 7 of 7)	32862.0	NM_001311790	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	1.02577286746463	0.580891698782799	0.795810723407218	1.34756448733545	0.897126774136845	0.584107692331473	2.01520381559837	0.556989841855789	0.813659177047313	0.59554060000787	0.971139446851758
Merged-chr8-127837016-3	chr8	127836939	127837139	+	748.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	441186.0	NR_105822	102465212.0		NR_105822	ENSMUSG00000099326	Mir21c	Gm28013|mmu-mir-21c	microRNA 21c	ncRNA	1.05196333764125	-0.0403789301839797	0.317168770759726	-0.052445106604372	0.247045856945263	-0.0388569046389464	-0.0456646139384	-0.0515203488581291	-2.6348203317129	0.236735916870237	1
Merged-chr10-119240543-2	chr10	119240451	119240651	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_027994)	promoter-TSS (NM_027994)	-496.0	NM_027994	71902.0	Mm.203965	NM_027994	ENSMUSG00000020114	Cand1	2310038O07Rik|6330512O03Rik|AI195005|AI846556|D10Ertd516e|Tp120a|mKIAA0829	cullin associated and neddylation disassociated 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-123616698-2	chr4	123616598	123616798	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_105824)	TTS (NR_105824)	278.0	NR_105824	102465214.0		NR_105824	ENSMUSG00000099005	Mir6398	Gm27657|mmu-mir-6398	microRNA 6398	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-82924801-4	chr1	82924693	82924893	+	975.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	85333.0	NM_001347077	15463.0	Mm.392569	NM_010472	ENSMUSG00000026159	Agfg1	AU045498|C130049H11Rik|C85612|D730048C23Rik|Hrb|RAB|Rip	ArfGAP with FG repeats 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-104062947-4	chr9	104062712	104062912	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175324)	promoter-TSS (NM_175324)	309.0	NM_025692	66663.0	Mm.224935	NM_025692	ENSMUSG00000032557	Uba5	5730525G14Rik|AW240750|Ube1dc1	ubiquitin-like modifier activating enzyme 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45454868-12	chr7	45454771	45454971	+	993.7222289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_030678, exon 15 of 16)	exon (NM_030678, exon 15 of 16)	5015.0	NM_010240	14325.0	Mm.30357	NM_010240	ENSMUSG00000050708	Ftl1	Ftl|Ftl-1|L-ferritin	ferritin light polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-8803267-4	chr4	8803168	8803368	+	998.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355382, intron 3 of 36)	intron (NM_001355382, intron 3 of 36)	51944.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-21138845-5	chr5	21138731	21138931	+	695.719971	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37448.0	NR_153366	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-63375480-2	chr4	63375380	63375580	+	738.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001045514, intron 15 of 21)	intron (NM_001045514, intron 15 of 21)	13031.0	NM_011016	18406.0	Mm.14173	NM_011016	ENSMUSG00000061540	Orm2	Agp1|Orm-2	orosomucoid 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-74268148-4	chr18	74268054	74268254	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013594)	promoter-TSS (NM_013594)	-21.0	NM_001357423	17190.0	Mm.22522	NM_013594	ENSMUSG00000024561	Mbd1	Cxxc3|PCM1	methyl-CpG binding domain protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-48559980-3	chr9	48559887	48560087	+	866.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45136.0	NM_010924	18113.0	Mm.8362	NM_010924	ENSMUSG00000032271	Nnmt	-	nicotinamide N-methyltransferase	protein-coding	2.41557206596353	3.95562234193555	1.74432638649525	2.55975118997112	2.84361439592837	3.71909167355229	2.19793292678903	2.12274013548568	-0.0972206263277398	0.907396114000076	0.998431161219273
Merged-chr13-102669089-3	chr13	102668980	102669180	+	846.166626	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24467.0	NM_001360519	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-137374327-4	chr4	137374237	137374437	+	891.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	-16578.0	NM_001243769	12540.0	Mm.1022	NM_009861	ENSMUSG00000006699	Cdc42	AI747189|AU018915	cell division cycle 42	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117378787-2	chr10	117378687	117378887	+	743.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1814.0	NM_001310609	432508.0	Mm.478881	NM_001013391	ENSMUSG00000055531	Cpsf6	4733401N12Rik|AI256641|CFIM|CFIM68|HPBRII-4|HPBRII-7	cleavage and polyadenylation specific factor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-42348277-2	chr6	42348177	42348377	+	616.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1551.0	NM_001289619	22793.0	Mm.282303	NM_011777	ENSMUSG00000029860	Zyx	9530098H06Rik|R75157	zyxin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-108879067-3	chr4	108878946	108879146	+	913.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023537)	promoter-TSS (NM_023537)	-24.0	NM_023537	69908.0	Mm.41580	NM_023537	ENSMUSG00000003411	Rab3b	2610528C18Rik	RAB3B, member RAS oncogene family	protein-coding	1.81680157623557	0.891880696131896	2.54006460676312	1.71907335250283	1.0436088908385	0.896865632883636	0.874318660733159	1.84282166377195	-1.89060149969088	0.150658657467865	0.602589676101411
Merged-chr6-31213200-6	chr6	31213253	31213453	+	759.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110469, intron 1 of 3)	intron (NR_110469, intron 1 of 3)	5121.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-110003232-4	chr7	110003086	110003286	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_037959, intron 2 of 2)	intron (NR_037959, intron 2 of 2)	3460.0	NR_037959	69781.0	Mm.440728	NR_037959	ENSMUSG00000101585	1600010M07Rik	-	RIKEN cDNA 1600010M07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98372390-2	chr11	98372290	98372490	+	891.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021547, intron 2 of 14)	intron (NM_021547, intron 2 of 14)	-11421.0	NM_011540	21393.0	Mm.10762	NM_011540	ENSMUSG00000007877	Tcap	AI503981|AJ223855	titin-cap	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-137880397-4	chr3	137880314	137880514	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033155, intron 1 of 7)	intron (NM_001033155, intron 1 of 7)	12739.0	NM_001033155	70604.0	Mm.256488	NM_001033155	ENSMUSG00000074212	Dnajb14	5730496F10Rik	DnaJ heat shock protein family (Hsp40) member B14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100862075-3	chr7	100861982	100862182	+	633.75	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177073, intron 1 of 10)	intron (NM_177073, intron 1 of 10)	1331.0	NM_001358914	320100.0	Mm.40336	NM_177073	ENSMUSG00000008318	Relt	E430021K24Rik|Tnfrsf19l	RELT tumor necrosis factor receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-86584235-2	chr11	86584135	86584335	+	804.6999509999999	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029738)	promoter-TSS (NR_029738)	-77.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-83421975-4	chr18	83421856	83422056	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	-96072.0	NR_045361	70960.0	Mm.410834	NR_045361		4921531P14Rik	1700108N05Rik	RIKEN cDNA 4921531P14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-12131485-4	chr18	12131384	12131584	+	977.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024182, intron 1 of 12)	intron (NM_024182, intron 1 of 12)	2634.0	NM_024182	66878.0	Mm.28551	NM_024182	ENSMUSG00000024404	Riok3	1200013N13Rik|D18Ertd331e|E130306C24Rik|Sudd	RIO kinase 3	protein-coding	4.57979904734608	4.40468955232554	4.37915479696341	4.64342480304517	4.08225784214751	4.94340571902765	4.35434846741522	5.0245150741209	0.17982364889384	0.640744237052875	0.982599433509505
Merged-chr12-108794455-5	chr12	108794300	108794500	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009537, intron 1 of 4)	CpG-3499	1089.0	NM_009537	22632.0	Mm.3868	NM_009537	ENSMUSG00000021264	Yy1	AW488674|NF-E1	YY1 transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180314849-4	chr1	180314761	180314961	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-15615.0	NM_001081175	320404.0	Mm.132535	NM_001081175	ENSMUSG00000038855	Itpkb	1110033J02Rik|E130307H12Rik	inositol 1,4,5-trisphosphate 3-kinase B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-67261158-3	chr17	67261063	67261263	+	790.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	L1MA5|LINE|L1	93296.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114686700-2	chr11	114686600	114686800	+	843.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_053273, intron 2 of 13)	intron (NM_053273, intron 2 of 13)	11232.0	NM_053273	117160.0	Mm.271934	NM_053273	ENSMUSG00000034714	Ttyh2	1110001A03Rik	tweety family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-41603579-4	chr13	41603459	41603659	+	941.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2657.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-55201335-2	chr13	55201235	55201435	+	998.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-8447.0	NM_008739	18193.0	Mm.168965	NM_008739	ENSMUSG00000021488	Nsd1	AI528500|KMT3B	nuclear receptor-binding SET-domain protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165983154-4	chr2	165983048	165983248	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1M|LTR|ERVL-MaLR	-9489.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-156185611-2	chr2	156185400	156185600	+	786.583374	f1_balb.idr|f1_c57bl6.idr	Intergenic	MERVL-int|LTR|ERVL	-5262.0	NM_133242	170791.0	Mm.392436	NM_133242	ENSMUSG00000027620	Rbm39	1500012C14Rik|2310040E03Rik|B330012G18Rik|C79248|R75070|Rnpc2|caper	RNA binding motif protein 39	protein-coding	0.955038454823641	1.30210290227144	0.776529671270327	0.605143881989693	1.22275398985011	0.804784578987176	0.929245377931445	0.606100450217881	-0.140912325225279	0.927256028378972	1
Merged-chr14-56304369-3	chr14	56304282	56304482	+	667.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42048.0	NM_013542	14939.0	Mm.14874	NM_013542	ENSMUSG00000015437	Gzmb	AI553453|CCP-1/C11|CCP1|Ctla-1|Ctla1|GZB	granzyme B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-130954354-4	chr6	130954233	130954433	+	901.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	293029.0	NM_001170851	16633.0	Mm.4783	NM_008462	ENSMUSG00000030187	Klra2	Klra30|Ly49b	killer cell lectin-like receptor, subfamily A, member 2	protein-coding	0.293360881977332	0.325775700317831	0.315349439926434	0.307180290862922	1.15838214585163	0.918752797970184	1.40595959945001	0.308615566828861	4.63659340965573	0.0131434997070704	1
Merged-chr11-4187707-2	chr11	4187607	4187807	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134023, intron 1 of 8)	intron (NM_134023, intron 1 of 8)	874.0	NM_134023	103724.0	Mm.28140	NM_134023	ENSMUSG00000034412	Tbc1d10a	AI447804|EPI64|Tbc1d10|mFLJ00288	TBC1 domain family, member 10a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-65057320-2	chr6	65057220	65057420	+	578.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007958, intron 4 of 23)	intron (NM_007958, intron 4 of 23)	14114.0	NM_001253392	13990.0	Mm.99113	NM_007958	ENSMUSG00000029920	Smarcad1	AV081750|AW226546|D6Pas1|Etl1|etl-1|mKIAA1122	SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-110062071-1	chr7	110061971	110062171	+	1000.0	f0_balb.idr	intron (NM_009281, intron 1 of 15)	CpG	369.0	NM_009281	20841.0	Mm.10815	NM_009281	ENSMUSG00000061079	Zfp143	AA959806|AU015869|D7Ertd805e|KRAB14|SBF|Staf|Zfp79|Zfp80-rs1|Znf143|pHZ-1	zinc finger protein 143	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19320941-2	chr7	19320841	19321041	+	788.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-10896.0	NM_001347586	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56930228-4	chr17	56930116	56930316	+	838.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022328, intron 1 of 11)	intron (NM_022328, intron 1 of 11)	5172.0	NM_022328	64144.0	Mm.148748	NM_022328	ENSMUSG00000024212	Mllt1	AA407901|BAM11|ENL|LTG19	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-144241164-4	chr1	144241103	144241303	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	7901.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-32247811-2	chr4	32247715	32247915	+	853.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-169620.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-84444442-3	chr14	84444356	84444556	+	826.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001013753, exon 1 of 4)	5' UTR (NM_001013753, exon 1 of 4)	893.0	NM_001013753	219228.0	Mm.153643	NM_001013753	ENSMUSG00000035566	Pcdh17	C030033F14Rik|Gm78	protocadherin 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-174041701-4	chr2	174041600	174041800	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-35351.0	NM_172675	228960.0	Mm.277977	NM_172675	ENSMUSG00000027522	Stx16	4930401D03|5430410K23Rik|6330500A18Rik|AI648908|AW553605|Syn16	syntaxin 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91876513-2	chr16	91876413	91876613	+	666.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010587, intron 28 of 38)	intron (NM_010587, intron 28 of 38)	55117.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-111131897-3	chr10	111131795	111131995	+	633.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID2|SINE|ID	-32907.0	NM_001003717	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141731570-1	chr4	141731470	141731670	+	557.0	f0_balb.idr	Intergenic	Intergenic	-8151.0	NM_001017966	68817.0	Mm.393721	NM_001017966	ENSMUSG00000078515	Ddi2	1110056G13Rik|1700027M01Rik|9130022E05Rik|AI604911|AU040698	DNA-damage inducible protein 2	protein-coding	1.32900215394203	1.76086430397044	0.641316282540015	1.86382225696427	0.611652168475617	0.660045590784395	0.878049144815802	0.849630559282202	-3.40213236714233	0.0315949851587249	0.245409990462483
Merged-chr7-28796034-4	chr7	28795895	28796095	+	999.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177158, exon 8 of 12)	exon (NM_177158, exon 8 of 12)	7026.0	NM_177158	320435.0	Mm.74632	NM_177158	ENSMUSG00000051735	Rinl	5830482F20Rik|9930116N10Rik	Ras and Rab interactor-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-135731583-2	chr1	135731483	135731683	+	788.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_007791, intron 1 of 5)	intron (NM_007791, intron 1 of 5)	2416.0	NM_007791	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-65555124-3	chr18	65555021	65555221	+	818.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_105742, intron 1 of 6)	LTR16E1|LTR|ERVL	-25109.0	NM_207255	328977.0	Mm.286232	NM_207255	ENSMUSG00000042439	Zfp532	C530030I18Rik|Znf532|mKIAA1629	zinc finger protein 532	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120549702-4	chr11	120549604	120549804	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033231)	promoter-TSS (NM_001033231)	23.0	NM_001033231	192173.0	Mm.262300	NM_001033231	ENSMUSG00000061111	Mcrip1	Fam195b	MAPK regulated corepressor interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-53788496-3	chr11	53788391	53788591	+	849.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033332, intron 3 of 3)	intron (NR_033332, intron 3 of 3)	18018.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70111044-4	chr14	70110995	70111195	+	997.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021328, intron 1 of 8)	intron (NM_021328, intron 1 of 8)	11002.0	NM_001360404	57784.0	Mm.24186	NM_021328	ENSMUSG00000022089	Bin3	1700015F07Rik	bridging integrator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-86733398-4	chr6	86733316	86733516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011818)	promoter-TSS (NM_011818)	-38.0	NM_011818	23885.0	Mm.321452	NM_011818	ENSMUSG00000001157	Gmcl1	2810049L19Rik|Btbd13|DIP|Gcl|Gcl-1|glc-1|mglc-1	germ cell-less, spermatogenesis associated 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-146261150-4	chr5	146261061	146261261	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153599, intron 2 of 12)	LSU-rRNA_Hsa|rRNA|rRNA	29911.0	NM_153599	264064.0	Mm.260576	NM_153599	ENSMUSG00000029635	Cdk8	-	cyclin-dependent kinase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-98522765-1	chr7	98522665	98522865	+	540.0	f1_c57bl6.idr	Intergenic	Intergenic	28543.0	NM_001113379	434215.0	Mm.323057	NM_001113379	ENSMUSG00000090958	Lrrc32	AI426318|D11S833Eh|D7H11S833E|EG434215|Garp	leucine rich repeat containing 32	protein-coding	2.52467434794533	2.40165225715544	2.32054722174286	2.4765668905315	2.15776637287345	2.11801992556245	1.40189972250508	3.09407551455319	-0.15754380949906	0.859749554722143	0.998431161219273
Merged-chr2-91947893-4	chr2	91947783	91947983	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166597, intron 1 of 31)	intron (NM_001166597, intron 1 of 31)	2465.0	NM_001166597	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-20220544-3	chr11	20220446	20220646	+	901.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008996, intron 3 of 5)	intron (NM_008996, intron 3 of 5)	19134.0	NM_008996	19324.0	Mm.271944	NM_008996	ENSMUSG00000020149	Rab1a	Gtbp|Rab-1|Rab1|Ypt1|mKIAA3012	RAB1A, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-20730614-2	chr16	20730514	20730714	+	819.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289896)	promoter-TSS (NM_001289896)	-16.0	NM_001289894	21832.0	Mm.3943	NM_009379	ENSMUSG00000022847	Thpo	Mgdf|Ml|Mpllg|Tpo	thrombopoietin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-107758501-4	chr13	107758409	107758609	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 5 of 14)	intron (NM_145456, intron 5 of 14)	71112.0	NR_045900	72257.0	Mm.234155	NR_045900	ENSMUSG00000102000	1700006H21Rik	-	RIKEN cDNA 1700006H21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-97630739-3	chr1	97630638	97630838	+	846.099976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30938.0	NM_001355074	52392.0	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-80457581-2	chr15	80457481	80457681	+	743.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163189, intron 5 of 5)	RMER1A|Other|Other	-18978.0	NR_155274	102633578.0	Mm.397484	NR_155274	ENSMUSG00000115888	Gm31369	-	predicted gene, 31369	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-105764517-1	chr12	105764417	105764617	+	544.0	f1_c57bl6.idr	intron (NM_030187, intron 14 of 17)	B3|SINE|B2	-20180.0	NM_011112	18789.0	Mm.255877	NM_011112	ENSMUSG00000021111	Papola	Pap|PapIII|Plap	poly (A) polymerase alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70012475-2	chr11	70012375	70012575	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_029758)	TTS (NR_029758)	432.0	NR_029758	723896.0		NR_029758	ENSMUSG00000065534	Mir324	Mirn324|mir-324|mmu-mir-324	microRNA 324	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-75089096-4	chr8	75088967	75089167	+	975.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4551.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-81074859-4	chr7	81074757	81074957	+	887.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054085, intron 3 of 13)	intron (NM_054085, intron 3 of 13)	17257.0	NM_054085	116904.0	Mm.475768	NM_054085	ENSMUSG00000038763	Alpk3	AW319487|D330016D04|MAK|Midori|mKIAA1330	alpha-kinase 3	protein-coding	-0.0652861343102802	0.7266734358273	-0.0521308097488282	-0.0570545367362134	-0.0640569210253488	0.169833844127812	0.680992582786602	-0.056192529928619	0.177333010659638	0.93704724997357	1
Merged-chr7-123240231-4	chr7	123240103	123240303	+	795.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146198, intron 5 of 16)	intron (NM_146198, intron 5 of 16)	25337.0	NM_146198	233836.0	Mm.211838	NM_146198	ENSMUSG00000030769	Slc5a11	2010013B02Rik|Kst1|RKST2|SMIT2|Slc5a10	solute carrier family 5 (sodium/glucose cotransporter), member 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-16214152-4	chr4	16214042	16214242	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045765, intron 3 of 6)	MTD|LTR|ERVL-MaLR	50032.0	NR_045765	100415915.0	Mm.387180	NR_045765	ENSMUSG00000085112	A530072M11Rik	-	RIKEN cDNA gene A530072M11	ncRNA	2.88578468968291	2.98577458270148	3.88530211893532	2.59142576295045	1.75658435725984	1.74456350235758	2.57398463203257	1.62992888615386	-2.40791714888254	0.00342438036906791	0.0499421179109524
Merged-chr7-68692139-2	chr7	68692039	68692239	+	807.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57099.0	NM_001042592	66412.0	Mm.251199	NM_025549	ENSMUSG00000042659	Arrdc4	2410003C09Rik|AV216361	arrestin domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-67415926-3	chr15	67415845	67416045	+	678.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ERV3-16A3_I-int|LTR|ERVL	189176.0	NR_045140	69334.0	Mm.63770	NR_045140	ENSMUSG00000102069	1700012I11Rik	-	RIKEN cDNA 1700012I11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167928685-2	chr2	167928585	167928785	+	786.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3642.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-77610338-4	chr10	77610246	77610446	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301673, intron 2 of 3)	L1MC5|LINE|L1	-3363.0	NR_125903	20610.0	Mm.24433	NM_019929	ENSMUSG00000020265	Sumo3	2810014B19Rik|D10Ertd345e|SMT3A|SUMO-3|Smt3h1	small ubiquitin-like modifier 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-8212649-4	chr19	8212552	8212752	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172776, intron 2 of 9)	L1_Mus2|LINE|L1	6248.0	NM_172776	236293.0	Mm.440581	NM_172776	ENSMUSG00000075044	Slc22a29	D630002G06Rik	solute carrier family 22. member 29	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-68859058-3	chr9	68858966	68859166	+	927.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013646, intron 1 of 10)	intron (NM_013646, intron 1 of 10)	93720.0	NR_033299	320440.0	Mm.483129	NM_177159		9530091C08Rik	-	RIKEN cDNA 9530091C08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-87851026-1	chr17	87850926	87851126	+	848.0	f1_balb.idr	Intergenic	Intergenic	-53032.0	NM_199251	210741.0	Mm.312046	NM_199251	ENSMUSG00000050138	Kcnk12	mntk1	potassium channel, subfamily K, member 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129414785-1	chr2	129414685	129414885	+	748.0	f1_balb.idr	Intergenic	Intergenic	-43646.0	NM_008361	16176.0	Mm.222830	NM_008361	ENSMUSG00000027398	Il1b	IL-1beta|Il-1b	interleukin 1 beta	protein-coding	2.90362747386597	1.8699338585614	1.79601293022859	2.17460919590732	3.90358084581229	2.98071806657186	4.20300361838879	3.33460939608293	2.4052407493577	0.000752792820291318	0.0154305380259486
Merged-chr13-37830906-3	chr13	37830805	37831005	+	955.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039188, intron 1 of 9)	intron (NM_001039188, intron 1 of 9)	3512.0	NM_001039188	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-84736913-2	chr2	84736813	84737013	+	853.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001005342, exon 2 of 5)	exon (NM_001005342, exon 2 of 5)	2709.0	NM_001005342	241525.0	Mm.486398	NM_001005342	ENSMUSG00000034059	Ypel4	-	yippee like 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-18607285-3	chr2	18607182	18607382	+	849.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65180.0	NM_147778	12238.0	Mm.249586	NM_147778	ENSMUSG00000051154	Commd3	AW550818|Bup|D2Ertd542e	COMM domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-53505712-4	chr10	53505607	53505807	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_037973, intron 3 of 3)	intron (NR_037973, intron 3 of 3)	13282.0	NR_037973	100502868.0	Mm.297722	NR_037973	ENSMUSG00000112739	Gm20597	B230314j19	predicted gene, 20597	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-9100807-3	chr19	9100718	9100918	+	677.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12862.0	NM_011681	22287.0	Mm.2258	NM_011681	ENSMUSG00000024653	Scgb1a1	CC10|CC16|CCSP|PCB-BP|UG|UGB|Utg	secretoglobin, family 1A, member 1 (uteroglobin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-26803998-2	chr10	26803898	26804098	+	786.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_176837, intron 1 of 14)	intron (NM_176837, intron 1 of 14)	31486.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-93005690-4	chr16	93005576	93005776	+	941.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-179602.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-65823834-2	chr5	65823734	65823934	+	776.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001024917, intron 18 of 19)	intron (NM_001024917, intron 18 of 19)	-39735.0	NM_001081105	74734.0	Mm.20323	NM_001081105	ENSMUSG00000029204	Rhoh	5830400A04Rik|AU019774|Arhh	ras homolog family member H	protein-coding	-0.609193251194111	-0.734339680765716	-0.737184062967704	-0.338234241799257	-0.382902907400805	-0.733696324073372	-0.736558084252085	-0.738986866686994	-0.536808749569367	0.84842524774723	1
Merged-chr16-57551753-2	chr16	57551653	57551853	+	790.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177871, intron 1 of 1)	intron (NM_001177871, intron 1 of 1)	2511.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-92834301-3	chr1	92834255	92834455	+	835.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016696, intron 1 of 8)	intron (NM_016696, intron 1 of 8)	2710.0	NM_016696	14733.0	Mm.297976	NM_016696	ENSMUSG00000034220	Gpc1	AI462976	glypican 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129702208-2	chr4	129702094	129702294	+	685.0	f0_c57.idr|f1_c57bl6.idr	TTS (NR_045036)	TTS (NR_045036)	-5349.0	NM_001356378	230770.0	Mm.257157	NM_199305	ENSMUSG00000053730	Tmem39b	6330509E05Rik|BC037095	transmembrane protein 39b	protein-coding	2.48818631319044	3.76118242796645	3.26376047028157	2.63051514220686	3.76724233430846	3.40039881936005	2.86589980229225	3.09787458845901	0.329626557964409	0.607649183999471	0.974576632476413
Merged-chr11-120687467-2	chr11	120687367	120687567	+	841.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026877, intron 5 of 15)	intron (NM_026877, intron 5 of 15)	10806.0	NM_001164224	68938.0	Mm.294020	NM_026877	ENSMUSG00000025142	Aspscr1	1190006K01Rik|ASPC|ASPCR1|ASPL|ASPS|RCC17|TUG	alveolar soft part sarcoma chromosome region, candidate 1 (human)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-172498626-1	chr1	172498526	172498726	+	545.0	f1_c57bl6.idr	3' UTR (NM_001145800, exon 21 of 21)	3' UTR (NM_001145800, exon 21 of 21)	-1620.0	NM_178598	21346.0	Mm.271711	NM_178598	ENSMUSG00000026547	Tagln2	2700094C18Rik|SM22beta|Sm22B|Sm22a	transgelin 2	protein-coding	0.331531263005775	0.961650981301279	0.191248108809136	0.947892290426403	0.177508233008252	0.200198036085509	0.192864214891182	0.517297299999856	-2.59944182226717	0.192766184943027	1
Merged-chr13-97559855-4	chr13	97559730	97559930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_046157)	promoter-TSS (NR_046157)	-170.0	NR_046157	328314.0	Mm.138047	NR_046157	ENSMUSG00000110235	Gm5086	B230311A21|EG328314	predicted gene 5086	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126803812-4	chr8	126803696	126803896	+	950.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45224.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-155529502-4	chr4	155529399	155529599	+	985.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160016, intron 3 of 11)	B1_Mur4|SINE|Alu	-32882.0	NM_138671	192185.0	Mm.28347	NM_138671	ENSMUSG00000029063	Nadk	4432404C02Rik|BC004012	NAD kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-92142805-2	chr10	92142718	92142918	+	711.5	f0_balb.idr|f1_balb.idr	intron (NR_028262, intron 3 of 12)	intron (NR_028262, intron 3 of 12)	-5595.0	NR_037219	100526517.0		NR_037219	ENSMUSG00000093227	Mir1251	mir-1251|mmu-mir-1251	microRNA 1251	ncRNA	2.22826060229925	1.11312983790638	1.73159757473068	1.30764019091427	2.32641717024163	1.81084655320516	1.09092473341531	2.84655382183721	1.25229437046152	0.269746475794526	0.772959591673376
Merged-chr8-111182253-4	chr8	111182154	111182354	+	940.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009149, intron 9 of 25)	intron (NM_009149, intron 9 of 25)	-36756.0	NR_040364	434350.0	Mm.442061	NR_040363		9430091E24Rik	-	RIKEN cDNA 9430091E24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-90068074-4	chr7	90067978	90068178	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38919.0	NR_110364	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-93847424-1	chr12	93847324	93847524	+	545.0	f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-79914.0	NR_106201	102466888.0		NR_106201	ENSMUSG00000098931	Mir8099-2	Gm27692|mmu-mir-8099-2	microRNA 8099-2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28601189-3	chr7	28601086	28601286	+	726.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3002.0	NM_027470	70584.0	Mm.21876	NM_027470	ENSMUSG00000030602	Pak4	5730488L07Rik|AW555722|mKIAA1142	p21 (RAC1) activated kinase 4	protein-coding	2.74606485181291	2.57672923583186	1.80535575426565	2.68101302341542	2.10408937783761	2.06203571045118	2.40076062440844	1.32571337523444	-1.10051829576227	0.228505220442457	0.721861600842291
Merged-chr3-105804687-1	chr3	105804587	105804787	+	587.0	f1_balb.idr	Intergenic	MER3|DNA|hAT-Charlie	-3306.0	NM_145541	109905.0	Mm.101922	NM_145541	ENSMUSG00000068798	Rap1a	AI848598|G-22K|Krev-1|Rap1	RAS-related protein 1a	protein-coding	-0.824497566677758	-0.814903851980546	-0.818306419692347	-0.820637457766893	-0.258685029129477	-0.812124547146492	-0.48677167724284	-0.820230539708979	3.11464082741708	0.293928459650856	1
Merged-chr8-120807237-2	chr8	120807137	120807337	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	68598.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-84355457-3	chr2	84355352	84355552	+	808.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018782, intron 9 of 15)	MTB_Mm|LTR|ERVL-MaLR	69814.0	NM_018782	54598.0	Mm.75467	NM_018782	ENSMUSG00000059588	Calcrl	AV071593|CRLR	calcitonin receptor-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128271016-2	chr10	128270916	128271116	+	955.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_133997)	TTS (NM_133997)	518.0	NM_019963	20847.0	Mm.293120	NM_019963	ENSMUSG00000040033	Stat2	1600010G07Rik|AW496480	signal transducer and activator of transcription 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-116565094-4	chr10	116565077	116565277	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359563, intron 1 of 13)	intron (NM_001359563, intron 1 of 13)	15359.0	NM_001359250	72068.0	Mm.351553	NM_028082	ENSMUSG00000020166	Cnot2	2600016M12Rik|2810470K03Rik|AA537049|AA959607|AW557563|C79650	CCR4-NOT transcription complex, subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6400299-11	chr19	6400097	6400297	+	890.841614	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011242)	promoter-TSS (NM_011242)	-386.0	NM_011242	19395.0	Mm.77017	NM_011242	ENSMUSG00000032946	Rasgrp2	CDC25L|Caldaggef1	RAS, guanyl releasing protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-72873256-4	chr15	72873153	72873353	+	791.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164642, intron 16 of 16)	L1MB5|LINE|L1	-62929.0	NR_002864	353342.0	Mm.440245	NR_002864	ENSMUSG00000106847	Peg13	-	paternally expressed 13	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-134509178-4	chr5	134509078	134509278	+	878.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009990, intron 8 of 16)	MIR3|SINE|MIR	43256.0	NM_001039162	269713.0	Mm.255138	NM_009990	ENSMUSG00000063146	Clip2	B230327O20|CLIP-115|Clip1|Cyln2|WSCR4|mKIAA0291|wbscr4	CAP-GLY domain containing linker protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-32712775-4	chr19	32712688	32712888	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026487)	promoter-TSS (NM_026487)	-490.0	NM_026487	67979.0	Mm.27123	NM_026487	ENSMUSG00000013662	Atad1	4921525H23Rik|AW107648|Thorase	ATPase family, AAA domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-14125459-3	chr16	14125354	14125554	+	994.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081154, intron 21 of 26)	intron (NM_001081154, intron 21 of 26)	33820.0	NM_001081154	223989.0	Mm.85442	NM_001081154	ENSMUSG00000060657	Marf1	4921513D23Rik|BC031575|C87306|E030019O05|Lkap|mKIAA0430	meiosis regulator and mRNA stability 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-73537890-4	chr12	73537788	73537988	+	919.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8507.0	NM_178715	238257.0	Mm.251196	NM_178715	ENSMUSG00000034435	Tmem30b	9130011B11Rik	transmembrane protein 30B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-107723411-2	chr5	107723311	107723511	+	571.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001267621, intron 2 of 6)	CpG	932.0	NM_010278	14581.0	Mm.2078	NM_010278	ENSMUSG00000029275	Gfi1	AW495828|Gfi-1|Pal-1|Pal1	growth factor independent 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5723181-2	chr17	5723081	5723281	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 5 of 8)	intron (NM_146073, intron 5 of 8)	-75476.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-45480867-2	chr2	45480767	45480967	+	671.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER20C_Mm|LTR|ERVK	-215738.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-164250661-1	chr1	164250561	164250761	+	540.0	f1_c57bl6.idr	intron (NM_001276455, intron 1 of 5)	intron (NM_001276455, intron 1 of 5)	1615.0	NM_054087	116914.0	Mm.35444	NM_054087	ENSMUSG00000040918	Slc19a2	AV276020|AW322295|DDA1|THTR1|TRMA|ThTr-1	solute carrier family 19 (thiamine transporter), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-91170084-4	chr13	91169983	91170183	+	872.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025770, intron 2 of 7)	intron (NM_025770, intron 2 of 7)	53904.0	NM_025770	66795.0	Mm.235385	NM_025770	ENSMUSG00000021619	Atg10	5330424L23Rik|5430428K15Rik|AI852123|APG10|Agp10|Apg10l|Apg10p|Atg10l	autophagy related 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-93245818-3	chr15	93245723	93245923	+	719.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033275, intron 6 of 7)	ORR1F|LTR|ERVL-MaLR	29356.0	NM_001357006	223827.0	Mm.22819	NM_001033275	ENSMUSG00000036197	Gxylt1	Glt8d3|Gm1228|Gm87	glucoside xylosyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-123026342-4	chr4	123026258	123026458	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151450, intron 1 of 9)	intron (NR_151450, intron 1 of 9)	9765.0	NR_151450	66966.0	Mm.235030	NM_025873	ENSMUSG00000028653	Trit1	2310075G14Rik|AI314189|AI314635|AV099619|IPPT|IPT|MOD5	tRNA isopentenyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31495093-4	chr14	31494967	31495167	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359850)	promoter-TSS (NM_001359850)	-12.0	NM_028932	74427.0	Mm.491208	NM_028932	ENSMUSG00000021890	Eaf1	4933403C17Rik|AI666536	ELL associated factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-43894279-4	chr5	43894204	43894404	+	943.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007646, intron 1 of 7)	intron (NM_007646, intron 1 of 7)	25495.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67596829-4	chr10	67596758	67596958	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24899.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-125791570-4	chr2	125791425	125791625	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8655.0	NM_177608	70354.0	Mm.138091	NM_133725	ENSMUSG00000035093	Secisbp2l	3110001I20Rik|AI504340|C630011I23	SECIS binding protein 2-like	protein-coding	2.61769127098655	1.75170315941486	3.58892598276571	2.06971344863705	2.83494263141178	1.76715859154763	4.39353359711942	2.26031872720532	0.853064480781613	0.328021034087965	0.830597486712967
Merged-chr19-4122071-4	chr19	4121956	4122156	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001276284)	promoter-TSS (NM_001276284)	-481.0	NM_001276284	11632.0	Mm.10433	NM_016666	ENSMUSG00000024847	Aip	AA408703|AW476050|Ara9|D19Bwg1412e|Fkbp16|Xap2	aryl-hydrocarbon receptor-interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-86059604-4	chr1	86059513	86059713	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5006.0	NM_027357	70247.0	Mm.280013	NM_027357	ENSMUSG00000026229	Psmd1	2410026J11Rik|P112|S1	proteasome (prosome, macropain) 26S subunit, non-ATPase, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-96526182-4	chr9	96526076	96526276	+	731.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-47501.0	NM_001311135	19823.0	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115285503-2	chr11	115285403	115285603	+	838.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178035, intron 3 of 5)	intron (NM_178035, intron 3 of 5)	-8534.0	NM_007997	14149.0	Mm.4719	NM_007997	ENSMUSG00000018861	Fdxr	AR	ferredoxin reductase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-20534904-2	chr10	20534804	20535004	+	796.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013875, intron 2 of 12)	B4|SINE|B4	13424.0	NM_001347366	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-34954753-4	chr18	34954649	34954849	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010481)	promoter-TSS (NM_010481)	-398.0	NM_010481	15526.0	Mm.209419	NM_010481	ENSMUSG00000024359	Hspa9	74kDa|Csa|Grp75|Hsc74|Hsp74|Hsp74a|Hspa9a|Mortalin|Mot-2|Mot2|Mthsp70|Pbp74	heat shock protein 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101366560-4	chr7	101366447	101366647	+	876.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040111, intron 1 of 33)	intron (NM_001040111, intron 1 of 33)	-11575.0	NM_001040112	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	1.22824806734833	0.846384687921935	0.618076400726048	1.40894109996593	0.596930450270886	0.631706057849336	0.994160968520755	1.50590684237787	-0.287287163067697	0.855009080375099	0.998431161219273
Merged-chr1-192532452-3	chr1	192532368	192532568	+	853.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144881, intron 11 of 11)	intron (NM_144881, intron 11 of 11)	238751.0	NM_144881	226861.0	Mm.145857	NM_144881	ENSMUSG00000037375	Hhat	2810432O22Rik|AI462858|AP-2CRE|Skn|Tg(TFAP2A-cre)1Will	hedgehog acyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-24688366-1	chr1	24688266	24688466	+	683.0	f0_balb.idr	intron (NM_026719, intron 2 of 15)	ORR1A2-int|LTR|ERVL-MaLR	9448.0	NM_001310483	68421.0	Mm.336563	NM_026719	ENSMUSG00000073725	Lmbrd1	0910001K20Rik|AV347960	LMBR1 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-36925150-2	chr19	36925050	36925250	+	613.833374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080706)	promoter-TSS (NM_001080706)	-929.0	NM_001080706	107182.0	Mm.295062	NM_001080706	ENSMUSG00000040565	Btaf1	AI414500|AI447930|E430027O22Rik|TAF170	B-TFIID TATA-box binding protein associated factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-43410480-4	chr11	43410387	43410587	+	977.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15494.0	NM_013917	30939.0	Mm.6856	NM_013917	ENSMUSG00000020415	Pttg1	AW555095|C87862|Pttg|Pttg3	pituitary tumor-transforming gene 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-43241417-2	chr1	43241317	43241517	+	953.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44656.0	NM_001289533	14200.0	Mm.6799	NM_010212	ENSMUSG00000008136	Fhl2	FHL-2|SLIM-3|SLIM3	four and a half LIM domains 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124432606-4	chr5	124432515	124432715	+	895.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-6658.0	NM_001081203	243272.0	Mm.23879	NM_145631	ENSMUSG00000038095	Sbno1	9330180L10Rik|AI849128|AW557836|BC021875|Sbno|mSno1|sno	strawberry notch 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122653498-3	chr5	122653397	122653597	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038845, intron 2 of 12)	intron (NM_001038845, intron 2 of 12)	3073.0	NM_001284402	18439.0	Mm.42026	NM_011027	ENSMUSG00000029468	P2rx7	AI467586|P2X(7)|P2X7R	purinergic receptor P2X, ligand-gated ion channel, 7	protein-coding	2.09440049680787	1.1710656408224	1.14257530502733	2.21566266635642	2.28605784560363	1.6708653496656	1.61538062488223	2.82210970061968	1.08983157249927	0.320387978460836	0.822777175850409
Merged-chr18-57636013-4	chr18	57635904	57636104	+	925.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045360, intron 2 of 2)	intron (NR_045360, intron 2 of 2)	2581.0	NR_045360	70157.0	Mm.490532	NR_045360		2210409D07Rik	-	RIKEN cDNA 2210409D07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-31803882-4	chr16	31803796	31803996	+	968.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357281, intron 8 of 22)	intron (NM_001357281, intron 8 of 22)	49546.0	NM_001252436	13383.0	Mm.382	NM_007862	ENSMUSG00000022770	Dlg1	B130052P05Rik|Dlgh1|E-dlg/SAP97|SAP-97|SAP97|mKIAA4187	discs large MAGUK scaffold protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70616067-4	chr8	70615965	70616165	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153074)	promoter-TSS (NM_153074)	-779.0	NM_153074	211228.0	Mm.132939	NM_153074	ENSMUSG00000049988	Lrrc25	Mapa	leucine rich repeat containing 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-58745653-4	chr15	58745547	58745747	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	77780.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-80713958-2	chr18	80713858	80714058	+	704.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164109)	promoter-TSS (NM_001164109)	-887.0	NM_001164110	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-193145355-4	chr1	193145254	193145454	+	922.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7758.0	NM_016851	54139.0	Mm.273695	NM_016851	ENSMUSG00000026638	Irf6	AI876454|E230028I05Rik|mirf6	interferon regulatory factor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-102394117-4	chr7	102394039	102394239	+	659.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009287, intron 3 of 11)	ID_B1|SINE|B4	-47556.0	NM_009103	20133.0	Mm.197486	NM_009103	ENSMUSG00000030978	Rrm1	RnrM1	ribonucleotide reductase M1	protein-coding	0.536827321387927	1.14789058626678	0.989821189909922	0.545567338501649	0.674698539326846	0.745632003271179	1.28606390958688	0.702942403179828	0.291074845997667	0.855157894831227	1
Merged-chr13-111936583-2	chr13	111936483	111936683	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	LFSINE_Vert|SINE|tRNA	68647.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-4304584-2	chr18	4304484	4304684	+	642.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13B4|LTR|ERVK	48369.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-145340117-4	chr6	145340000	145340200	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47525.0	NR_003625	381827.0	Mm.179075	NM_001001987		1700073E17Rik	-	ribosomal protein L7 pseudogene	pseudo	4.90935611587813	4.94189112319786	5.06662953564944	4.6666353581228	5.26562589445443	4.97470061902613	5.13646968169927	4.34242875201833	0.087912439348905	0.795660372666834	0.998431161219273
Merged-chr15-7134659-3	chr15	7134546	7134746	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113386, intron 2 of 16)	intron (NM_001113386, intron 2 of 16)	5074.0	NM_001358593	16880.0	Mm.149720	NM_013584	ENSMUSG00000054263	Lifr	A230075M04Rik|AW061234|LIF	leukemia inhibitory factor receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65404748-3	chr9	65404602	65404802	+	757.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162923, intron 2 of 4)	intron (NM_001162923, intron 2 of 4)	6214.0	NM_001033158	70784.0	Mm.35827	NM_001033158	ENSMUSG00000041696	Rasl12	4631404I11Rik	RAS-like, family 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-16365706-4	chr14	16365596	16365796	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009409, exon 1 of 36)	exon (NM_009409, exon 1 of 36)	490.0	NM_009409	21974.0	Mm.130362	NM_009409	ENSMUSG00000017485	Top2b	D230016L12Rik|Top-2	topoisomerase (DNA) II beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-140465578-2	chr3	140465478	140465678	+	824.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5b|LINE|L1	437329.0	NR_105798	102465198.0		NR_105798	ENSMUSG00000099169	Mir7j	Gm27716|Mirlet7j|mmu-let-7j	microRNA 7j	ncRNA	-1.05877568042897	-1.03501312238488	-1.04817210678232	-1.05426068996071	-1.05810152525527	-1.03216151557194	-0.188696606725984	-1.05378786495764	3.16074139804981	0.330468818528456	1
Merged-chr11-82567541-4	chr11	82567424	82567624	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65829.0	NR_033582	791422.0	Mm.341562	NR_033582	ENSMUSG00000069796	Gm11426	-	predicted gene 11426	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-75832257-3	chr15	75832132	75832332	+	953.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172121, intron 3 of 11)	ID_B1|SINE|B4	9676.0	NM_172121	223642.0	Mm.209800	NM_172121	ENSMUSG00000075600	Zc3h3	BC049953|Kiaa0150|Smicl|Zc3hdc3	zinc finger CCCH type containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115653706-4	chr11	115653609	115653809	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001313936, intron 3 of 5)	intron (NM_001313936, intron 3 of 5)	-25414.0	NM_001252395	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-40595364-4	chr6	40595258	40595458	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9553.0	NM_001038604	23845.0	Mm.103765	NM_021364	ENSMUSG00000029915	Clec5a	Clecsf5|Ly100|MDL-1|Mdl1	C-type lectin domain family 5, member a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-96578779-4	chr13	96578673	96578873	+	796.716675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023420, intron 3 of 17)	RMER6B|LTR|ERVK	36038.0	NM_023420	68018.0	Mm.24125	NM_023420	ENSMUSG00000021669	Col4a3bp	2810404O15Rik|9230101K08Rik|AU016711|CERT|GPBP	collagen, type IV, alpha 3 (Goodpasture antigen) binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-4913617-2	chr12	4913517	4913717	+	564.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-3736.0	NM_001099628	320817.0	Mm.210966	NM_001099628	ENSMUSG00000052812	Atad2b	1110014E10Rik|BC032887|C79189|D530031C13Rik	ATPase family, AAA domain containing 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166064890-1	chr2	166064790	166064990	+	545.0	f1_balb.idr	intron (NM_008679, intron 17 of 22)	(TG)n|Simple_repeat|Simple_repeat	72253.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-108224247-2	chr11	108224147	108224347	+	771.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_011101, intron 2 of 16)	intron (NM_011101, intron 2 of 16)	119641.0	NM_011101	18750.0	Mm.222178	NM_011101	ENSMUSG00000050965	Prkca	AI875142|Pkca	protein kinase C, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67097989-3	chr10	67097884	67098084	+	958.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001204915)	promoter-TSS (NM_001204915)	-996.0	NM_178606	28193.0	Mm.41272	NM_178606	ENSMUSG00000019873	Reep3	D10Ucla1	receptor accessory protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-86655802-4	chr11	86655715	86655915	+	906.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356531, intron 5 of 11)	intron (NM_001356531, intron 5 of 11)	15460.0	NM_001356531	75909.0	Mm.390398	NM_029478	ENSMUSG00000018171	Vmp1	3110098I04Rik|4930579A11Rik|AI787464|Tango5|Tmem49|mir-21a|ni-2	vacuole membrane protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-5344260-4	chr9	5344128	5344328	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1248.0	NM_009808	12364.0	Mm.42163	NM_009808	ENSMUSG00000025887	Casp12	-	caspase 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120519898-4	chr11	120519820	120520020	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10807.0	NM_008101	14527.0	Mm.22329	NM_008101	ENSMUSG00000025127	Gcgr	GR	glucagon receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4758427-2	chr16	4758327	4758527	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357050, intron 1 of 5)	intron (NM_001357050, intron 1 of 5)	1481.0	NM_001357050	15369.0	Mm.272866	NM_010443	ENSMUSG00000004070	Hmox2	HO-2|HO2	heme oxygenase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27717087-2	chr2	27716987	27717187	+	971.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290482, intron 1 of 9)	intron (NM_001290482, intron 1 of 9)	6504.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70775035-4	chr14	70774894	70775094	+	636.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010071, intron 1 of 4)	intron (NM_010071, intron 1 of 4)	613.0	NM_010071	13449.0	Mm.243323	NM_010071	ENSMUSG00000022102	Dok2	DokR|Frip|dok-R	docking protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-65545716-4	chr4	65545625	65545825	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207109, intron 17 of 22)	Lx9|LINE|L1	-59261.0	NM_053084	69807.0	Mm.22786	NM_053084	ENSMUSG00000051675	Trim32	1810045E12Rik|3f3|BBS11|Zfp117	tripartite motif-containing 32	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127385434-2	chr10	127385334	127385534	+	793.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359244, intron 1 of 25)	L2a|LINE|L2	4766.0	NM_001359244	71750.0	Mm.29342	NM_027900	ENSMUSG00000025404	R3hdm2	1300003K24Rik|AU041262|mKIAA1002	R3H domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105854013-2	chr8	105853915	105854115	+	585.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-1088.0	NM_021513	59016.0	Mm.286598	NM_021513	ENSMUSG00000036442	Thap11	2810036E22Rik|AB041579|CTG-B43a|CTG-B45d|Ronin	THAP domain containing 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-45541665-2	chr19	45541565	45541765	+	808.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	18899.0	NM_001330506	56626.0	Mm.46509	NM_020032	ENSMUSG00000025218	Poll	1110003P06Rik|AV007317	polymerase (DNA directed), lambda	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-101800481-2	chr2	101800381	101800581	+	674.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355625, intron 1 of 8)	intron (NM_001355625, intron 1 of 8)	-2774.0	NM_001083810	72446.0	Mm.24138	NM_175181	ENSMUSG00000032841	Prr5l	2600010E01Rik|4833411O04Rik|Protor-2|Protor2	proline rich 5 like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-104743518-2	chr2	104743418	104743618	+	617.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144804)	promoter-TSS (NM_144804)	-717.0	NM_144804	211896.0	Mm.288805	NM_144804	ENSMUSG00000027173	Depdc7	AV216087	DEP domain containing 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-34114882-4	chr16	34114813	34115013	+	852.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177357, intron 34 of 59)	intron (NM_177357, intron 34 of 59)	-147875.0	NM_009471	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-45326159-4	chr13	45326059	45326259	+	989.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63583.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-5197510-1	chr10	5197410	5197610	+	654.0	f0_balb.idr	intron (NM_001347711, intron 90 of 145)	intron (NM_001347711, intron 90 of 145)	-2803.0	NM_001079686	64009.0	Mm.331626	NM_022027	ENSMUSG00000096054	Syne1	8B|A330049M09Rik|BE692247|C130039F11Rik|CPG2|KASH1|Myne1|mKIAA1756|myne-1	spectrin repeat containing, nuclear envelope 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-75842017-4	chr15	75841925	75842125	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172121)	promoter-TSS (NM_172121)	-117.0	NM_172121	223642.0	Mm.209800	NM_172121	ENSMUSG00000075600	Zc3h3	BC049953|Kiaa0150|Smicl|Zc3hdc3	zinc finger CCCH type containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-41723231-4	chr4	41723133	41723333	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016890)	promoter-TSS (NM_016890)	-70.0	NM_016890	53598.0	Mm.29025	NM_016890	ENSMUSG00000028447	Dctn3	p24	dynactin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-126658572-4	chr2	126658497	126658697	+	823.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355108, intron 1 of 7)	intron (NM_001355108, intron 1 of 7)	16755.0	NM_001355109	14391.0	Mm.293266	NM_010249	ENSMUSG00000027361	Gabpb1	BABPB2|E4TF1|E4TF1-47|E4TF1-53|E4Tf1B|GABPB|GABPB-1|GABPB-2|GABPB1-1|GABPB1-2|NRF2B1|NRF2B2	GA repeat binding protein, beta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-120510046-2	chr1	120509946	120510146	+	672.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR12|LTR|ERV1	-5022.0	NM_010766	17167.0	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-35927620-7	chr18	35927521	35927721	+	920.271423	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37209.0	NM_001289602	74002.0	Mm.196944	NM_028707	ENSMUSG00000024347	Psd2	6330404E20Rik|AW125584|EFA6C	pleckstrin and Sec7 domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-26503147-4	chr2	26503055	26503255	+	814.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_132655)	promoter-TSS (NR_132655)	667.0	NM_008714	18128.0	Mm.290610	NM_008714	ENSMUSG00000026923	Notch1	9930111A19Rik|Mis6|N1|Tan1|lin-12	notch 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-97952619-2	chr15	97952519	97952719	+	932.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11610.0	NM_001356508	380967.0	Mm.196630	NM_201359	ENSMUSG00000052369	Tmem106c	AI046681|BC046621|D15Ertd405e	transmembrane protein 106C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6240395-2	chr19	6240295	6240495	+	813.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1273.0	NM_194348	329015.0	Mm.277384	NM_194348	ENSMUSG00000024773	Atg2a	1810013C15Rik|A830054M12|BC023754|mKIAA0404	autophagy related 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-37070068-4	chr19	37069973	37070173	+	840.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198300, intron 7 of 10)	L1MA5|LINE|L1	-103770.0	NR_045329	319931.0	Mm.446730	NR_045329	ENSMUSG00000097591	A330032B11Rik	-	RIKEN cDNA A330032B11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116389353-3	chr11	116389233	116389433	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027258, intron 2 of 18)	intron (NM_027258, intron 2 of 18)	23699.0	NM_027258	217340.0	Mm.426344	NM_027258	ENSMUSG00000052949	Rnf157	2610036E23Rik|A130073L17Rik|mKIAA1917	ring finger protein 157	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-59000805-4	chr4	59000685	59000885	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-2408.0	NM_001033165	72429.0	Mm.317801	NM_001033165	ENSMUSG00000070972	Dnajc25	2010109C08Rik|2010203O07Rik	DnaJ heat shock protein family (Hsp40) member C25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-84646507-4	chr17	84646402	84646602	+	813.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172256, intron 8 of 12)	intron (NM_172256, intron 8 of 12)	20003.0	NM_172256	213575.0	Mm.246119	NM_172256	ENSMUSG00000024253	Dync2li1	4933404O11Rik|CGI-60|D2lic|LIC3|mD2LIC	dynein cytoplasmic 2 light intermediate chain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-77268328-2	chr5	77268228	77268428	+	592.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_011263, exon 2 of 4)	exon (NM_011263, exon 2 of 4)	2834.0	NM_011263	19712.0	Mm.28840	NM_011263	ENSMUSG00000029249	Rest	2610008J04Rik|AA407358|NRSF|REST4	RE1-silencing transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-78936036-2	chr17	78935931	78936131	+	699.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001024806, exon 2 of 16)	exon (NM_001024806, exon 2 of 16)	1039.0	NM_001024806	12607.0	Mm.24169	NM_009882	ENSMUSG00000024081	Cebpz	AI848081|CBF2|Cbf|Cebpa-rs1	CCAAT/enhancer binding protein zeta	protein-coding	1.17124280051563	2.05221060367899	0.683832006891796	0.669179210484796	1.42892096671695	0.706335785135128	1.98502257807043	0.671767732901209	0.101072610324891	0.947326916094948	0.998431161219273
Merged-chr4-125115792-4	chr4	125115748	125115948	+	827.679138	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12033.0	NM_153159	230738.0	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-120404681-4	chr2	120404578	120404778	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001110496)	promoter-TSS (NM_001110496)	-562.0	NM_001110496	211499.0	Mm.260712	NM_173734	ENSMUSG00000033808	Tmem87a	A930025J12Rik	transmembrane protein 87A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-73461691-4	chr13	73461601	73461801	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5682.0	NM_145376	210992.0	Mm.284649	NM_145376	ENSMUSG00000021608	Lpcat1	2900035H07Rik|Aytl2|BB137372|BC005662|C87117|LPCAT|rd11	lysophosphatidylcholine acyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166482031-2	chr2	166481931	166482131	+	792.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34580.0	NR_015558	319684.0	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-15027129-3	chr8	15027038	15027238	+	723.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_029116, exon 2 of 2)	5' UTR (NM_029116, exon 2 of 2)	16113.0	NM_029116	74901.0	Mm.46675	NM_029116	ENSMUSG00000055675	Kbtbd11	2900016B01Rik|4930465M17Rik|mKIAA0711	kelch repeat and BTB (POZ) domain containing 11	protein-coding	-0.520821539515656	-0.871583049742127	-0.877923506059039	-0.88003680827373	-0.416899165617375	-0.868958809369053	-0.877318134074192	-0.879668109448034	0.445988717269444	0.886418580920667	1
Merged-chr10-79779385-2	chr10	79779285	79779485	+	700.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_031380, intron 2 of 4)	intron (NM_031380, intron 2 of 4)	2111.0	NM_031380	83554.0	Mm.251710	NM_031380	ENSMUSG00000020325	Fstl3	E030038F23Rik|Flrg	follistatin-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-49341501-4	chr13	49341415	49341615	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029791)	promoter-TSS (NM_029791)	-34.0	NM_001039179	76895.0	Mm.197387	NM_029791	ENSMUSG00000037933	Bicd2	-	BICD cargo adaptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-34398183-2	chr13	34398083	34398283	+	714.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53001.0	NM_001033167	73102.0	Mm.23932	NM_001033167	ENSMUSG00000038267	Slc22a23	3110004L20Rik	solute carrier family 22, member 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80636283-2	chr7	80636183	80636383	+	924.833374	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040343, exon 2 of 5)	non-coding (NR_040343, exon 2 of 5)	266.0	NR_040343	100504375.0	Mm.322881	NR_040343	ENSMUSG00000084821	Gm15880	-	predicted gene 15880	ncRNA	-2.18243820993087	-2.15538464093652	-2.16356586349869	-2.17028616330028	-2.18053909940952	-2.15361173587851	-2.16171381403791	-2.0403552525549	0.759018020146679	0.829933115115583	1
Merged-chr10-94504905-1	chr10	94504805	94505005	+	555.0	f1_balb.idr	intron (NM_001359762, intron 2 of 4)	intron (NM_001359762, intron 2 of 4)	-9952.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-136139640-2	chr4	136139540	136139740	+	952.7000119999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-4182.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-99163236-2	chr11	99163136	99163336	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8159.0	NM_007719	12775.0	Mm.2932	NM_007719	ENSMUSG00000037944	Ccr7	CC-CKR-7|CCR-7|CD197|Cdw197|Cmkbr7|EBI1|Ebi1h	chemokine (C-C motif) receptor 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-13474465-3	chr15	13474365	13474565	+	734.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	-300790.0	NM_007666	12563.0	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-9008433-6	chr8	9008379	9008579	+	894.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	123809.0	NR_045854	71249.0	Mm.158635	NR_045854	ENSMUSG00000108848	4933430N04Rik	-	RIKEN cDNA 4933430N04 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-35460456-4	chr15	35460351	35460551	+	914.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177151, intron 16 of 61)	intron (NM_177151, intron 16 of 61)	88905.0	NM_177151	666173.0	Mm.309250	NM_177151	ENSMUSG00000037646	Vps13b	1810042B05Rik|2310042E16Rik|4732488H20|C330002D13Rik|C87206|Coh1|D230005K13|mKIAA0532|mKIAA5032	vacuolar protein sorting 13B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-89742348-4	chr13	89742210	89742410	+	798.724976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_019389, exon 1 of 14)	5' UTR (NM_019389, exon 1 of 14)	202.0	NM_001081249	13003.0	Mm.158700	NM_019389	ENSMUSG00000021614	Vcan	5430420N07Rik|9430051N09|Cspg2|DPEAAE|NG2|PG-M|PG-M(V0)|PG-M(V1)|hdf	versican	protein-coding	1.57992299643717	1.09853182782869	2.51956857212859	1.95272131187519	1.73473395831003	1.10496102930682	2.8879602010602	1.50809861050951	0.277700402877578	0.80719405604401	0.998431161219273
Merged-chr16-8823859-4	chr16	8823766	8823966	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	-6234.0	NM_001081400	69053.0	Mm.390868	NM_001081400	ENSMUSG00000022507	1810013L24Rik	1110017P05Rik|3010002C02Rik|AA792997|AW124177|Gm19906|R74903	RIKEN cDNA 1810013L24 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-58139100-2	chr3	58139000	58139200	+	736.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24707.0	NR_040538	67850.0	Mm.416968	NR_040538	ENSMUSG00000100666	1700007F19Rik	-	RIKEN cDNA 1700007F19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76626135-4	chr15	76626044	76626244	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001305668)	promoter-TSS (NM_001305668)	-60.0	NM_001305668	66914.0	Mm.30028	NM_025842	ENSMUSG00000115987	Vps28	1110014J03Rik|CIIA|D730005C08Rik	vacuolar protein sorting 28	protein-coding	4.40284164662936	4.59921609357871	5.01500168916978	4.48591687380231	4.66967237981486	4.9659013301135	4.31405040056045	4.76615926481111	0.0666637911909337	0.854171390937149	0.998431161219273
Merged-chr17-71306760-2	chr17	71306674	71306874	+	831.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357337, intron 2 of 7)	intron (NM_001357337, intron 2 of 7)	4237.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	0.434846759349279	0.811245241878861	0.450182406877796	0.870416153300624	1.08993959573579	0.819077949871806	0.45182746961806	0.876505098318894	1.00321341693051	0.556134521380411	1
Merged-chr19-33325487-2	chr19	33325387	33325587	+	733.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001146342, intron 2 of 4)	intron (NM_001146342, intron 2 of 4)	66808.0	NM_001167818	67795.0	Mm.204591	NM_001146342	ENSMUSG00000071573	Rnls	6530404N21Rik|AI452315|AW060440|C10orf59	renalase, FAD-dependent amine oxidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-87618837-2	chr3	87618709	87618909	+	861.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360197, intron 1 of 38)	intron (NM_001360197, intron 1 of 38)	1250.0	NM_001360195	213498.0	Mm.287267	NM_001003912	ENSMUSG00000041977	Arhgef11	PDZ-RhoGEF|Prg|RhoGEF|mKIAA0380	Rho guanine nucleotide exchange factor (GEF) 11	protein-coding	2.64317319331155	1.43839386175241	1.66212963933934	2.61261350973452	2.74042853943033	2.14705472660511	3.1150025832879	2.62626859342985	1.01648361605204	0.249281975832749	0.747698903845194
Merged-chr7-34234140-4	chr7	34233992	34234192	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-3756.0	NM_008155	14751.0	Mm.589	NM_008155	ENSMUSG00000036427	Gpi1	Amf|Gpi|Gpi-1|Gpi-1r|Gpi-1s|Gpi-1t|Gpi1-r|Gpi1-s|Gpi1-t|Gpi1s|MF|NK|NK/GPI|Nlk|Org|Pgi|Phi	glucose phosphate isomerase 1	protein-coding	6.56238052631699	6.58219499098052	7.13032260086912	6.46437134652352	6.14979724339377	6.5196961231071	6.31621437333785	6.58334059165884	-0.331718162267398	0.122481339291181	0.548468938348689
Merged-chr9-63844298-3	chr9	63844205	63844405	+	853.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-86311.0	NM_016769	17127.0	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-94010775-4	chr2	94010658	94010858	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026944)	promoter-TSS (NM_026944)	-28.0	NM_026944	69113.0	Mm.272498	NM_026944	ENSMUSG00000040174	Alkbh3	1700108H04Rik|1810020C19Rik|Abh3|mABH3	alkB homolog 3, alpha-ketoglutarate-dependent dioxygenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-57731822-4	chr10	57731722	57731922	+	965.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039050, intron 4 of 4)	intron (NM_001039050, intron 4 of 4)	-53101.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-148342541-2	chr5	148342441	148342641	+	776.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_007513, intron 6 of 12)	intron (NM_007513, intron 6 of 12)	50274.0	NM_001301424	11987.0	Mm.275489	NM_007513	ENSMUSG00000041313	Slc7a1	4831426K01Rik|AI447493|Atrc-1|Atrc1|Cat1|Rec-1|Rev-1|mCAT-1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-21991897-4	chr3	21991801	21992001	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-84751.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-97246500-3	chr7	97246520	97246720	+	939.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162477, intron 2 of 9)	intron (NM_001162477, intron 2 of 9)	79344.0	NM_001177412	244144.0	Mm.297541	NM_001177412	ENSMUSG00000035713	Usp35	Gm1088|Gm493	ubiquitin specific peptidase 35	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-124299055-4	chr2	124299004	124299204	+	967.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290997, intron 3 of 20)	intron (NM_001290997, intron 3 of 20)	-76746.0	NR_040612	75946.0	Mm.415059	NR_040612	ENSMUSG00000086954	4930583P06Rik	-	RIKEN cDNA 4930583P06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-137994756-4	chr4	137994646	137994846	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001256195, intron 2 of 34)	intron (NM_001256195, intron 2 of 34)	1290.0	NM_172703	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	1.73313058056081	1.58647538784735	0.597996508478682	1.35657393528807	0.917886712102659	0.614795784660658	0.601053736855377	0.589083269113753	-3.43333790164561	0.040874176359895	0.288475510568248
Merged-chr9-94605146-4	chr9	94605050	94605250	+	980.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64742.0	NM_177909	331004.0	Mm.326125	NM_177909	ENSMUSG00000031129	Slc9a9	5730527A11Rik|9930105B05|AI854429|Nhe9	solute carrier family 9 (sodium/hydrogen exchanger), member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118409662-2	chr11	118409562	118409762	+	557.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025617, intron 3 of 4)	intron (NM_001025617, intron 3 of 4)	6138.0	NM_001267591	76025.0	Mm.177551	NM_029502	ENSMUSG00000025575	Cant1	5830420C20Rik|Apy1h|D11Bwg0554e|Entpd8|SCAN-1|Shapy	calcium activated nucleotidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-44608177-3	chr18	44608082	44608282	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085373, intron 3 of 18)	intron (NM_001085373, intron 3 of 18)	-53483.0	NR_026853	626275.0	Mm.427116	NR_026853	ENSMUSG00000097610	A930012L18Rik	-	RIKEN cDNA A930012L18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-57074985-2	chr9	57074885	57075085	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_152107)	TTS (NR_152107)	1064.0	NR_152107	72588.0	Mm.70350	NR_152107		2700012I20Rik	-	RIKEN cDNA 2700012I20 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83616765-4	chr11	83616658	83616858	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_036453, intron 5 of 8)	intron (NR_036453, intron 5 of 8)	-23671.0	NM_009139	20305.0	Mm.137	NM_009139	ENSMUSG00000018927	Ccl6	MRP-1|Scya6|c10	chemokine (C-C motif) ligand 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152779238-4	chr1	152779152	152779352	+	973.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12710.0	NM_026369	67771.0	Mm.288974	NM_026369	ENSMUSG00000008475	Arpc5	5830443F10Rik|p16-Arc	actin related protein 2/3 complex, subunit 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-74705268-3	chr5	74705170	74705370	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2367.0	NM_001159577	16924.0	Mm.440403	NM_010727	ENSMUSG00000029228	Lnx1	Lnx	ligand of numb-protein X 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115700426-4	chr11	115700327	115700527	+	965.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001313937)	promoter-TSS (NM_001313937)	-499.0	NM_001313936	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-103513903-2	chr15	103513803	103514003	+	612.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357980, intron 1 of 14)	intron (NM_001357980, intron 1 of 14)	-1074.0	NM_001285890	18574.0	Mm.390792	NM_008800	ENSMUSG00000022489	Pde1b	Pde1b1	phosphodiesterase 1B, Ca2+-calmodulin dependent	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-86416071-3	chr1	86415982	86416182	+	941.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10247.0	NM_027966	71863.0	Mm.179627	NM_027966	ENSMUSG00000036574	Tex44	1700019O17Rik	testis expressed 44	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-10838670-4	chr16	10838574	10838774	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162932, intron 1 of 1)	intron (NM_001162932, intron 1 of 1)	3615.0	NM_001162932	223970.0	Mm.325777	NM_001033278	ENSMUSG00000037991	Rmi2	A630055G03Rik|Gm537|Gm929	RecQ mediated genome instability 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-121384622-2	chr5	121384522	121384722	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172275, intron 1 of 11)	L1MC4|LINE|L1	787.0	NM_001359947	231712.0	Mm.20488	NM_172275	ENSMUSG00000042726	Trafd1	1110008K06Rik|Fln29	TRAF type zinc finger domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-102745391-1	chr13	102745291	102745491	+	680.0	f1_c57bl6.idr	intron (NM_175171, intron 26 of 28)	intron (NM_175171, intron 26 of 28)	-14864.0	NR_130318	76624.0	Mm.426384	NR_130171	ENSMUSG00000091906	1700099I09Rik	-	RIKEN cDNA 1700099I09 gene	ncRNA	-0.928940593673113	0.15260240890053	-0.919403370180166	-0.922956985378252	-0.928043701396376	-0.905131160573435	-0.918394354967459	-0.922333464130162	-3.4757377177308	0.248847205590595	1
Merged-chr10-117719138-4	chr10	117719025	117719225	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	-8367.0	NM_001288586	17246.0	Mm.22670	NM_010786	ENSMUSG00000020184	Mdm2	1700007J15Rik|AA415488|Mdm-2	transformed mouse 3T3 cell double minute 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-165210166-2	chr1	165210066	165210266	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPLTR4_I|LTR|ERVK	-15728.0	NR_151712	108735.0	Mm.288369	NM_145512	ENSMUSG00000040848	Sft2d2	2010005O13Rik|AI506168|AW561909|cI-45	SFT2 domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-83812650-2	chr7	83812550	83812750	+	705.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17811.0	NM_029335	75556.0	Mm.17649	NM_029335	ENSMUSG00000011154	Cfap161	1700026D08Rik|AW047638|AW551802	cilia and flagella associated protein 161	protein-coding	-0.833676135001413	-0.823207620569221	-0.827306200535163	-0.829703073392993	-0.833085601559602	-0.458571327663548	-0.82662053002982	-0.286125479083019	3.12104981787201	0.292024999180086	1
Merged-chr4-133087498-2	chr4	133087398	133087598	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43135.0	NM_153423	242687.0	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-46810715-4	chr11	46810603	46810803	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178759)	promoter-TSS (NM_178759)	-96.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	2.51139271428971	2.34347591047227	2.39830266451622	2.63847175333762	2.44291628947059	2.49423265948999	2.53175003464258	2.22313749535736	-0.121566548998375	0.87379521916463	0.998431161219273
Merged-chr17-24960822-4	chr17	24960693	24960893	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198937)	promoter-TSS (NM_198937)	-170.0	NM_198937	52009.0	Mm.371601	NM_198937	ENSMUSG00000024165	Jpt2	2810430B18Rik|AL022629|C16orf34|D17Ertd441e|Hn1l	Jupiter microtubule associated homolog 2	protein-coding	6.84108212209035	5.97565563223562	6.63926892515885	6.75838868166181	7.03171453263107	6.76361471372014	6.23157007650459	6.89236229302456	0.176802062231544	0.441764959730067	0.910912463366408
Merged-chr17-34345662-1	chr17	34345562	34345762	+	633.200012	f1_balb.idr	Intergenic	Intergenic	-1017.0	NM_010381	100504404.0	Mm.15680	NM_010381		H2-Ea-ps	AI323765|E-alpha-f|H-2Ea|H2-Ea|I-Ealpha|Ia-3|Ia3|MHC-H2-Ea	histocompatibility 2, class II antigen E alpha, pseudogene	protein-coding	1.49802147762242	1.10518957629292	0.86389803900446	0.852275519121192	1.40910218276273	1.30056357567929	1.85316054525274	1.69698584790236	1.83016641279804	0.163931915366048	0.627319302752023
Merged-chr4-42953352-1	chr4	42953252	42953452	+	551.0	f1_balb.idr	exon (NM_001355440, exon 2 of 4)	exon (NM_001355440, exon 2 of 4)	2956.0	NM_001355440	56323.0	Mm.20437	NM_019874	ENSMUSG00000036052	Dnajb5	1110058L06Rik|AI462558|Hsc40|Hsp40-3	DnaJ heat shock protein family (Hsp40) member B5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-12483791-3	chr19	12483703	12483903	+	734.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172442, intron 4 of 8)	intron (NM_172442, intron 4 of 8)	18193.0	NM_172442	207521.0	Mm.247695	NM_172442	ENSMUSG00000039982	Dtx4	AI449438|BC044798|D930042H13|RNF155	deltex 4, E3 ubiquitin ligase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-40650286-4	chr19	40650194	40650394	+	983.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304721, intron 1 of 9)	L1MC3|LINE|L1	-9476.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	3.87133543018936	3.36594533503482	3.66194461559763	3.417567868022	3.70822707119988	2.75337844997458	3.61748708511284	2.5695783487103	-0.51304059616924	0.380622204523278	0.872285472406141
Merged-chr9-32676739-4	chr9	32676638	32676838	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19304.0	NM_011808	23871.0	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67027676-2	chr10	67027576	67027776	+	791.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_110511, intron 2 of 6)	intron (NR_110511, intron 2 of 6)	22601.0	NR_110511	102634101.0	Mm.445258	NR_110511	ENSMUSG00000112925	Gm31763	-	predicted gene, 31763	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-16229106-4	chr9	16229022	16229222	+	949.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080814, intron 2 of 24)	intron (NM_001080814, intron 2 of 24)	149109.0	NM_001080814	270120.0	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT atypical cadherin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-77528912-2	chr9	77528812	77529012	+	902.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001146048, intron 1 of 13)	intron (NM_001146048, intron 1 of 13)	15147.0	NM_172528	214345.0	Mm.28534	NM_172528	ENSMUSG00000032352	Lrrc1	A430093J20Rik|AU016091|D030059I21|mKIAA4018	leucine rich repeat containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-148527216-4	chr2	148527102	148527302	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-83667.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-16615841-2	chr3	16615741	16615941	+	640.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-201253.0	NR_153388	102632048.0	Mm.417635	NR_153388		Gm30223	-	predicted gene, 30223	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-153807657-1	chr1	153807557	153807757	+	594.0	f0_balb.idr	intron (NM_001243223, intron 11 of 20)	intron (NM_001243223, intron 11 of 20)	36484.0	NM_001243223	240816.0	Mm.329340	NM_001243223	ENSMUSG00000042641	Rgsl1	4930415K13Rik|Gm202|Rgsl2	regulator of G-protein signaling like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-142403830-4	chr7	142403738	142403938	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15968.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-57482445-4	chr16	57482350	57482550	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	-66792.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	6.060758241826	6.49528778377578	7.15404115830269	6.21845524030408	6.14561235618983	6.42641271297105	7.11638620106072	6.17590908954296	-0.0246900469211449	0.928434741747645	0.998431161219273
Merged-chr4-66788442-3	chr4	66788307	66788507	+	762.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39144.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-98309542-4	chr7	98309440	98309640	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025408)	promoter-TSS (NM_025408)	2.0	NM_001360616	66190.0	Mm.334041	NM_025408	ENSMUSG00000030760	Acer3	1110057L18Rik|5430429L08Rik|AV015045|Phca|aPHC	alkaline ceramidase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101769907-2	chr11	101769807	101770007	+	713.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001316366, exon 13 of 13)	3' UTR (NM_001316366, exon 13 of 13)	15403.0	NM_008815	18612.0	Mm.5025	NM_008815	ENSMUSG00000017724	Etv4	AW414408|Pea-3|Pea3	ets variant 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-73107963-4	chr17	73107866	73108066	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177968)	promoter-TSS (NM_001177968)	-19.0	NM_001177968	225010.0	Mm.329194	NM_001081071	ENSMUSG00000054469	Lclat1	AI181996|Agpat8|Alcat1|Gm91|Lycat	lysocardiolipin acyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-148500570-5	chr2	148500477	148500677	+	900.8466800000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57042.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-5184397-4	chr5	5184307	5184507	+	946.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011074, intron 5 of 14)	L1M4a1|LINE|L1	81661.0	NM_001310448	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	1.81508671623672	0.817795200687	1.57040143404818	0.793694060374857	1.44410948565049	0.820817317305088	1.1916548351132	1.41880833726749	-0.37798284530984	0.792062629336748	0.998431161219273
Merged-chr7-19661815-2	chr7	19661715	19661915	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019649, intron 1 of 13)	intron (NM_019649, intron 1 of 13)	3215.0	NM_019649	56457.0	Mm.290960	NM_019649	ENSMUSG00000002981	Clptm1	HS9|N14	cleft lip and palate associated transmembrane protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-90685205-1	chr5	90685105	90685305	+	816.666687	f0_balb.idr	Intergenic	Intergenic	-44678.0	NM_001310656	73246.0	Mm.30172	NM_028478	ENSMUSG00000029370	Rassf6	1600016B17Rik	Ras association (RalGDS/AF-6) domain family member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-102850025-3	chr2	102849937	102850137	+	737.81665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009851, intron 5 of 18)	intron (NM_009851, intron 5 of 18)	51628.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	1.45417670496871	1.64199558090956	1.85114197055706	0.968407088079147	1.59473891806629	1.654995478902	2.48450321708325	0.971448676995434	0.83679468400057	0.487077113908888	0.932743862419479
Merged-chr5-148400334-4	chr5	148400246	148400446	+	977.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007513)	promoter-TSS (NM_007513)	-442.0	NM_007513	11987.0	Mm.275489	NM_007513	ENSMUSG00000041313	Slc7a1	4831426K01Rik|AI447493|Atrc-1|Atrc1|Cat1|Rec-1|Rev-1|mCAT-1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-113099773-2	chr12	113099673	113099873	+	677.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346696, intron 1 of 19)	intron (NM_001346696, intron 1 of 19)	1495.0	NM_054081	116870.0	Mm.212577	NM_054081	ENSMUSG00000021144	Mta1	-	metastasis associated 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-8286776-2	chr14	8286676	8286876	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23001.0	NM_183187	268709.0	Mm.256058	NM_183187	ENSMUSG00000021750	Fam107a	DRR1	family with sequence similarity 107, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70850460-3	chr14	70850377	70850577	+	796.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2456.0	NR_045939	73648.0	Mm.410851	NR_045939	ENSMUSG00000099528	2410012E07Rik	-	RIKEN cDNA 2410012E07 gene	ncRNA	1.29614172024694	0.791901577109102	0.77903534663264	1.11807907529502	1.30809194714196	1.49064099007669	0.98853062369865	1.75746920273986	1.6746441316984	0.222125059615312	0.713583934962101
Merged-chr4-108847911-4	chr4	108847870	108848070	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029571, exon 1 of 1)	exon (NM_029571, exon 1 of 1)	113.0	NM_029571	100087.0	Mm.440007	NM_029571	ENSMUSG00000073775	Kti12	1110001A12Rik|AI326810|AU014758	KTI12 homolog, chromatin associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-32121667-2	chr5	32121567	32121767	+	731.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14805.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-105780189-2	chr9	105780083	105780283	+	914.083374	f0_balb.idr|f1_balb.idr	intron (NM_172927, intron 6 of 7)	LTR16A1|LTR|ERVL	29465.0	NM_172927	245026.0	Mm.482507	NM_172927	ENSMUSG00000043719	Col6a6	E330019B14|E330026B02Rik	collagen, type VI, alpha 6	protein-coding	0.477928755388178	0.57340958702689	0.544149485285436	1.05913460975321	2.15132964041704	0.579773355445607	3.01770319064616	0.825963128170772	4.16613054178464	0.00675311130989717	0.0830162187460515
Merged-chr15-59430560-3	chr15	59430447	59430647	+	989.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164604, intron 3 of 4)	intron (NM_001164604, intron 3 of 4)	56349.0	NM_001164604	68501.0	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-93246698-1	chr10	93246598	93246798	+	774.0	f1_balb.idr	TTS (NM_013508)	TTS (NM_013508)	64461.0	NM_001322268	13713.0	Mm.4454	NM_013508	ENSMUSG00000008398	Elk3	D430049E23Rik|Erp|Etrp|Net|Sap-2	ELK3, member of ETS oncogene family	protein-coding	-0.0917511004571297	-0.062737331198307	0.645563282508026	-0.0793349528831515	-0.0898805939470102	-0.0606700963556067	-0.0699616275737087	1.30016907224765	1.48370354572771	0.50811225825733	1
Merged-chr16-18630531-2	chr16	18630431	18630631	+	688.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_213614)	promoter-TSS (NM_213614)	-593.0	NM_213614	18951.0	Mm.20365	NM_213614	ENSMUSG00000072214	Sept5	Cdcrel-1|Cdcrel1|Pnutl1	septin 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-33995922-1	chr17	33995822	33996022	+	715.0	f1_balb.idr	TTS (NM_001347346)	TTS (NM_001347346)	4411.0	NM_001001892	14972.0	Mm.422886	NM_001001892	ENSMUSG00000061232	H2-K1	H-2K|H-2K(d)|H2-K|K-f	histocompatibility 2, K1, K region	protein-coding	3.01404704223269	2.41274108129412	2.32799095516676	2.38111158648499	1.27120523696493	3.1334950555969	2.47319687728399	1.58524333384572	-0.468344898065702	0.61650860433895	0.97736719401417
Merged-chr9-40318970-3	chr9	40318853	40319053	+	922.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151734, intron 3 of 18)	intron (NR_151734, intron 3 of 18)	2370.0	NM_001357622	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85539090-2	chr12	85538990	85539190	+	750.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR53_Mm|LTR|ERVK	-60015.0	NM_001205052	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120574331-2	chr8	120574231	120574431	+	653.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145896, intron 12 of 15)	intron (NM_001145896, intron 12 of 15)	14744.0	NM_178856	272551.0	Mm.275910	NM_178856	ENSMUSG00000031821	Gins2	2210013I18Rik|4833427B12Rik|AI323585|Pfs2	GINS complex subunit 2 (Psf2 homolog)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134052060-4	chr6	134051952	134052152	+	841.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007961, intron 1 of 7)	intron (NM_007961, intron 1 of 7)	16352.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	2.38100914567044	1.52485605181499	2.70149732733017	2.09569099117727	2.85548861479722	2.81790712057925	3.43351379861117	2.83293159443584	1.51589871196875	0.0514113991734488	0.331037907307534
Merged-chr1-180266040-2	chr1	180265940	180266140	+	635.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9740.0	NM_001128605	19165.0	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31372569-2	chr14	31372469	31372669	+	620.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001360187)	TTS (NM_001360187)	35931.0	NM_009796	12339.0	Mm.201535	NM_009796	ENSMUSG00000021893	Capn7	AU022319|PalBH	calpain 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117155730-2	chr11	117155630	117155830	+	776.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166507, intron 14 of 16)	intron (NM_001166507, intron 14 of 16)	40558.0	NM_001166506	74136.0	Mm.272312	NM_028777	ENSMUSG00000020823	Sec14l1	1200017E04Rik|2810012L19Rik|Naa-35	SEC14-like lipid binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-25012951-4	chr8	25012858	25013058	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001270996, intron 1 of 21)	PB1D9|SINE|Alu	3964.0	NM_001270996	11502.0	Mm.28908	NM_007404	ENSMUSG00000031555	Adam9	AU020942|MDC9|Mltng|mKIAA0021	a disintegrin and metallopeptidase domain 9 (meltrin gamma)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-31507539-1	chr16	31507439	31507639	+	615.0	f1_balb.idr	Intergenic	Intergenic	-77763.0	NR_152205	100047123.0	Mm.466711	NR_152205		Gm15743	-	predicted gene 15743	ncRNA	0.733409481475249	0.377218447213345	0.3701144516375	0.899783608573961	1.01191155284111	0.37881857573424	0.371682079211835	0.906862522540436	0.503002272149678	0.786340078924819	1
Merged-chr11-102319453-4	chr11	102319291	102319491	+	829.604187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302954)	promoter-TSS (NM_001302954)	-295.0	NM_011551	21429.0	Mm.2845	NM_011551	ENSMUSG00000020923	Ubtf	A930005G04Rik|NOR-90|Tcfubf|UBF|UBF-1|UBF1	upstream binding transcription factor, RNA polymerase I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-57792190-2	chr10	57792090	57792290	+	571.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-2354.0	NM_020561	57319.0	Mm.2379	NM_020561	ENSMUSG00000019872	Smpdl3a	0610010C24Rik|AI529588|ASM3A|ASML3|ASML3A	sphingomyelin phosphodiesterase, acid-like 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-50289540-2	chr11	50289440	50289640	+	561.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175334, intron 1 of 4)	ORR1B2|LTR|ERVL-MaLR	2796.0	NM_175334	103806.0	Mm.51116	NM_175334	ENSMUSG00000050567	Maml1	AI644666|AW743257|D930008C07Rik|Mam-1|Mam1|mKIAA0200	mastermind like transcriptional coactivator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101894802-1	chr7	101894702	101894902	+	551.0	f1_c57bl6.idr	intron (NM_001291352, intron 1 of 5)	B1F|SINE|Alu	-1529.0	NM_001291348	75430.0	Mm.284491	NM_027532	ENSMUSG00000030649	Anapc15	3200002M19Rik|6330414C15Rik|APC15	anaphase prompoting complex C subunit 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-60869227-2	chr2	60869127	60869327	+	585.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	12211.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-164457035-4	chr2	164456961	164457161	+	997.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3910.0	NM_025575	66460.0	Mm.44218	NM_025575	ENSMUSG00000045503	Sys1	2610042O14Rik|AI266964|C87389	SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-63976148-4	chr3	63976065	63976265	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033300)	promoter-TSS (NM_001033300)	22.0	NM_001033300	229363.0	Mm.331051	NM_001033300	ENSMUSG00000027823	Gmps	670032|AA591640|AI047208|Gm9479	guanine monophosphate synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120108045-4	chr8	120107954	120108154	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA5A|LINE|L1	-6098.0	NM_001163762	234797.0	Mm.101958	NM_172286	ENSMUSG00000031824	6430548M08Rik	AW049007|Kiaa0513|mKIAA0513	RIKEN cDNA 6430548M08 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-59657340-5	chr9	59657247	59657447	+	992.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253883, intron 1 of 10)	CpG	979.0	NM_011099	18746.0	Mm.326167	NM_011099	ENSMUSG00000032294	Pkm	AA414905|AL024370|AL024424|Pk-2|Pk-3|Pk3|Pkm2	pyruvate kinase, muscle	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141214442-2	chr4	141214342	141214542	+	691.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081174, exon 2 of 6)	exon (NM_001081174, exon 2 of 6)	486.0	NM_001081174	76166.0	Mm.271064	NM_001081174	ENSMUSG00000073733	Rsg1	6330545A04Rik|Gm723|b2b2804Clo|b2b2827Clo	REM2 and RAB-like small GTPase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27907744-4	chr17	27907623	27907823	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_026836, exon 2 of 6)	5' UTR (NM_026836, exon 2 of 6)	1519.0	NM_026836	68776.0	Mm.267998	NM_026836	ENSMUSG00000024218	Taf11	1110038O14Rik|AI115401|AL024207|AW552398|PRO214|TAF2I|TAFII28	TATA-box binding protein associated factor 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120040619-4	chr11	120040517	120040717	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198785, intron 1 of 13)	intron (NM_001198785, intron 1 of 13)	1164.0	NM_001198787	11302.0	Mm.6826	NM_007377	ENSMUSG00000025375	Aatk	AATYK|aatyk1|mKIAA0641	apoptosis-associated tyrosine kinase	protein-coding	5.61177540556862	3.90295834017856	4.98865400515881	5.73126485574945	6.00751610894454	5.92721671291666	5.64145056323427	5.83853875740397	0.70649840737604	0.0372849197094697	0.274669136312454
Merged-chr13-100660122-2	chr13	100660022	100660222	+	769.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027592, intron 2 of 4)	B2_Mm2|SINE|B2	8515.0	NM_001015889	108143.0	Mm.301148	NM_027139	ENSMUSG00000052293	Taf9	2310012M09Rik|AA673500|AU045423|TAFII31|TAFII32|Taf2g	TATA-box binding protein associated factor 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-23746501-2	chr17	23746375	23746575	+	898.375	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028416)	promoter-TSS (NM_028416)	-646.0	NM_028416	73016.0	Mm.221319	NM_028416	ENSMUSG00000040680	Kremen2	2900054E04Rik|Krm2	kringle containing transmembrane protein 2	protein-coding	0.857883993033703	0.500409262479584	0.492511100303338	1.02624672904798	1.13915616783454	0.700839203496052	0.4942547618914	1.03343581975942	0.680870663868697	0.684106075398073	1
Merged-chr10-111068076-1	chr10	111067976	111068176	+	589.0	f1_c57bl6.idr	Intergenic	L1MC4|LINE|L1	-58010.0	NM_172554	320150.0	Mm.339281	NM_172554	ENSMUSG00000035798	Zdhhc17	A230053P19Rik|BB187739|D130071N24Rik|DHHC-17|Hip14	zinc finger, DHHC domain containing 17	protein-coding	1.48519128556094	1.09341216471364	0.6587496699302	1.8213711447036	0.815363816627752	0.675132200037456	0.661727460157455	1.29420621784207	-1.86825653653813	0.217400330312902	0.70802637434696
Merged-chr9-35107351-4	chr9	35107263	35107463	+	897.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009178, intron 1 of 10)	intron (NM_009178, intron 1 of 10)	-9365.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84501765-4	chr8	84501656	84501856	+	968.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252060, intron 3 of 47)	intron (NM_001252060, intron 3 of 47)	86392.0	NM_001252061	12286.0	Mm.334658	NM_007578	ENSMUSG00000034656	Cacna1a	APCA|BI|Caca1a|Cacnl1a4|Cav2.1|Ccha1a|EA2|FHM|HPCA|MHP|MHP1|SCA6|alpha1A|la|nmf352|rkr|smrl|tg	calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	protein-coding	1.33538334291841	0.908252378396217	1.29882193945511	1.85360534735408	1.20897738649943	2.18867163760416	1.12228641810625	1.26877325255529	0.447341759762526	0.716121425532158	0.998431161219273
Merged-chr2-131127402-1	chr2	131127302	131127502	+	543.0	f1_c57bl6.idr	promoter-TSS (NM_028306)	promoter-TSS (NM_028306)	-10.0	NM_028306	72630.0	Mm.277465	NM_028306	ENSMUSG00000074793	Hspa12b	2700081N06Rik	heat shock protein 12B	protein-coding	0.229988911921749	0.25807604955678	0.625871562880961	0.43474191941642	1.39634783486865	0.830145596807305	0.251014564759203	0.243162529691153	2.16231432984027	0.252316010802696	1
Merged-chr4-58911223-2	chr4	58911123	58911323	+	807.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355697, intron 1 of 49)	intron (NM_001355697, intron 1 of 49)	707.0	NM_001355697	230249.0	Mm.234801	NM_172381	ENSMUSG00000050812	AI314180	AW558785|BB181316|Ecpas|mKIAA0368	expressed sequence AI314180	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-20203656-2	chr11	20203556	20203756	+	793.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_008996, intron 1 of 5)	B3A|SINE|B2	2244.0	NM_008996	19324.0	Mm.271944	NM_008996	ENSMUSG00000020149	Rab1a	Gtbp|Rab-1|Rab1|Ypt1|mKIAA3012	RAB1A, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41764087-4	chr19	41764000	41764200	+	990.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17139.0	NR_040320	100502871.0	Mm.394485	NR_040320		Gm19424	-	predicted gene, 19424	ncRNA	1.5855952639329	0.982198863520899	1.72656274854275	1.44575221644521	1.59920870357271	1.68588722206223	0.970523966893192	1.57520304824107	0.0766537078829976	0.950862789419652	0.998431161219273
Merged-chr13-21782737-7	chr13	21782667	21782867	+	835.428589	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_178207)	TTS (NM_178207)	630.0	NM_178207	319153.0	Mm.390558	NM_178207	ENSMUSG00000101972	Hist1h3i	H3-H	histone cluster 1, H3i	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122907327-2	chr8	122907282	122907482	+	727.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_037865, intron 4 of 13)	PB1D11|SINE|Alu	59008.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	1.36480646244738	0.811276152641996	1.2062750455232	1.45057663033376	1.11733856761824	0.814962690678569	2.23292858659739	1.17652686605933	0.840092057068889	0.525326539285446	0.948340152465298
Merged-chr10-94810031-2	chr10	94809931	94810131	+	800.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_018797, intron 23 of 30)	intron (NM_018797, intron 23 of 30)	121241.0	NM_029852	77048.0	Mm.296971	NM_029852	ENSMUSG00000020024	Cep83	2600001G24Rik|4921537D05Rik|5730513H21Rik|Ccdc41	centrosomal protein 83	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-52081139-2	chr11	52081039	52081239	+	725.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166654, intron 13 of 13)	intron (NM_001166654, intron 13 of 13)	-17685.0	NM_019411	19052.0	Mm.260288	NM_019411	ENSMUSG00000020349	Ppp2ca	PP2A|R75353	protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-24552127-1	chr7	24552027	24552227	+	558.0	f0_balb.idr	5' UTR (NM_001360169, exon 1 of 16)	5' UTR (NM_001360169, exon 1 of 16)	640.0	NM_001360169	22594.0	Mm.4347	NM_009532	ENSMUSG00000051768	Xrcc1	Xrcc-1	X-ray repair complementing defective repair in Chinese hamster cells 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128814587-2	chr2	128814487	128814687	+	558.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3716.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-95797756-2	chr13	95797662	95797862	+	869.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027711, intron 2 of 35)	intron (NM_027711, intron 2 of 35)	94160.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	3.40049171638787	3.36911001688014	3.62445307986355	2.51546980801229	2.27160248433628	2.03032067682188	2.15737463555634	1.38155268547803	-2.52810199346246	0.00139092592418402	0.0254913379404682
Merged-chr8-33385642-4	chr8	33385542	33385742	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001098233)	promoter-TSS (NM_001098233)	-115.0	NM_011721	22427.0	Mm.228805	NM_011721	ENSMUSG00000031583	Wrn	AI846146	Werner syndrome RecQ like helicase	protein-coding	5.79814703391413	4.81420100129037	5.42687557443873	4.76573098687228	5.65697589655657	5.25067456987657	6.3246665969169	4.87254857969477	0.407216991152038	0.26116653465925	0.762408459680314
Merged-chr6-120145642-4	chr6	120145527	120145727	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016718, intron 1 of 3)	intron (NM_016718, intron 1 of 3)	-48196.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-128831122-2	chr8	128831022	128831222	+	603.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	145468.0	NM_010578	16412.0	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-70842388-3	chr2	70842283	70842483	+	750.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16903.0	NM_172664	228012.0	Mm.136511	NM_172664	ENSMUSG00000041997	Tlk1	4930545J15Rik	tousled-like kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-77522138-4	chr10	77522033	77522233	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6320.0	NM_133998	108707.0	Mm.259547	NM_133998	ENSMUSG00000032977	Fam207a	1810008A18Rik|AI303072	family with sequence similarity 207, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-92438333-3	chr5	92438228	92438428	+	866.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER20C_Mm|LTR|ERVK	-3129.0	NM_183392	269113.0	Mm.275289	NM_183392	ENSMUSG00000034826	Nup54	3110079L04Rik|54kDa	nucleoporin 54	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-195038149-1	chr1	195038049	195038249	+	755.0	f0_balb.idr	TTS (NR_015566)	TTS (NR_015566)	602.0	NR_029745	387224.0		NR_029745	ENSMUSG00000065548	Mir29c	Mirn29c|mir-29c|mmu-mir-29c	microRNA 29c	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-120025766-2	chr2	120025666	120025866	+	625.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011941, exon 30 of 30)	3' UTR (NM_011941, exon 30 of 30)	-1717.0	NR_104353	102238433.0	Mm.41467	NR_104353	ENSMUSG00000033852	Gm28042	Jmjd7-pla2g4b	predicted gene, 28042	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-22052074-2	chr13	22051953	22052153	+	586.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8823.0	NM_178198	319183.0	Mm.371766	NM_178198	ENSMUSG00000069300	Hist1h2bj	-	histone cluster 1, H2bj	protein-coding	0.684587922573506	0.523346924691569	0.324928360637808	1.03226986140548	0.693318401270722	0.690701563665352	0.32641633137459	0.320630190236023	-0.929674467319271	0.603150884623692	1
Merged-chr11-63058756-2	chr11	63058656	63058856	+	795.700012	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2903.0	NM_027660	71062.0	Mm.23534	NM_027660	ENSMUSG00000042189	Tekt3	4933407G07Rik	tektin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-58249694-2	chr15	58249594	58249794	+	987.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34802.0	NM_026346	67731.0	Mm.25683	NM_026346	ENSMUSG00000022358	Fbxo32	4833442G10Rik|AI430017|ATROGIN1|Gm20361|MAFbx	F-box protein 32	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-23922417-4	chr1	23922325	23922525	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028534)	promoter-TSS (NM_028534)	-44.0	NM_028534	98366.0	Mm.329963	NM_028534	ENSMUSG00000026155	Smap1	1700056O10Rik|4921514B13Rik|4921525H11Rik|AI462175	small ArfGAP 1	protein-coding	3.58632443769523	4.49624282487265	4.68583015121559	1.80316340988228	5.09342242552505	4.94673125331221	4.53875100374802	4.25586024306459	0.931106312821928	0.319486012836987	0.821951596143819
Merged-chr1-144295127-4	chr1	144295014	144295214	+	919.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46010.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-91133604-3	chr13	91133525	91133725	+	830.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025770, intron 3 of 7)	intron (NM_025770, intron 3 of 7)	90362.0	NM_025770	66795.0	Mm.235385	NM_025770	ENSMUSG00000021619	Atg10	5330424L23Rik|5430428K15Rik|AI852123|APG10|Agp10|Apg10l|Apg10p|Atg10l	autophagy related 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-34288539-2	chr19	34288439	34288639	+	700.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2120.0	NM_007987	14102.0	Mm.1626	NM_007987	ENSMUSG00000024778	Fas	AI196731|APO1|APT1|CD95|TNFR6|Tnfrsf6|lpr	Fas (TNF receptor superfamily member 6)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-75439780-2	chr9	75439663	75439863	+	639.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-1761.0	NM_001039522	235497.0	Mm.41508	NM_001006122	ENSMUSG00000042487	Leo1	Gm185	Leo1, Paf1/RNA polymerase II complex component	protein-coding	-0.445723071688749	-0.710026324588651	-0.713568545316525	0.0196189857887833	-0.720167606610576	-0.709228091018644	-0.712787141249951	-0.715824871459513	-3.29760827211211	0.245666276545393	1
Merged-chr3-144693290-4	chr3	144693172	144693372	+	970.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001282037, intron 9 of 10)	intron (NM_001282037, intron 9 of 10)	27063.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-31292562-2	chr5	31292462	31292662	+	954.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_022424, exon 7 of 7)	3' UTR (NM_022424, exon 7 of 7)	-1448.0	NM_026298	67661.0	Mm.293023	NM_026298	ENSMUSG00000038564	Ift172	4930553F24Rik|Slb|avc1|wim	intraflagellar transport 172	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-71543140-4	chr2	71543047	71543247	+	957.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010054)	TTS (NM_010054)	3607.0	NM_010054	13392.0	Mm.3896	NM_010054	ENSMUSG00000023391	Dlx2	AW121999|Dlx-2|Tes-1	distal-less homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-117506733-2	chr5	117506633	117506833	+	941.9285890000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001312914, intron 3 of 19)	B4|SINE|B4	92731.0	NM_001312914	333050.0	Mm.437947	NM_001034873	ENSMUSG00000061578	Ksr2	-	kinase suppressor of ras 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-117140886-2	chr4	117140786	117140986	+	858.125	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-6923.0	NM_001313916	12795.0	Mm.259022	NM_013807	ENSMUSG00000028680	Plk3	Cnk|Fnk|PLK-3|PRK	polo like kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-103860254-4	chr3	103860156	103860356	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008979)	promoter-TSS (NM_008979)	-21.0	NM_008979	19260.0	Mm.395	NM_008979	ENSMUSG00000027843	Ptpn22	70zpep|PEP|Ptpn8	protein tyrosine phosphatase, non-receptor type 22 (lymphoid)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88552237-3	chr3	88552141	88552341	+	898.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001362368)	TTS (NM_001362368)	710.0	NR_155543	83409.0	Mm.41680	NM_031248	ENSMUSG00000028062	Lamtor2	2010111E04Rik|AL022628|Mapbpip|P14|Rab25|Robld3	late endosomal/lysosomal adaptor, MAPK and MTOR activator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-11697787-2	chr18	11697687	11697887	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081223, intron 6 of 18)	MTD|LTR|ERVL-MaLR	40438.0	NM_001081223	225182.0	Mm.154275	NM_175458	ENSMUSG00000041238	Rbbp8	9930104E21Rik|CtIP|RBBP-8|RIM|SAE2	retinoblastoma binding protein 8, endonuclease	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-14865647-4	chr4	14865562	14865762	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028264, intron 1 of 6)	intron (NM_028264, intron 1 of 6)	1443.0	NM_028264	72519.0	Mm.279158	NM_028264	ENSMUSG00000028221	Tmem55a	2610319K07Rik|AI315591|AV001360|Pip4p2	transmembrane protein 55A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-134677015-3	chr4	134676937	134677137	+	879.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207237, intron 1 of 11)	intron (NM_207237, intron 1 of 11)	27253.0	NM_207237	230815.0	Mm.18905	NM_207237	ENSMUSG00000037306	Man1c1	AI593348	mannosidase, alpha, class 1C, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-27627450-2	chr15	27627350	27627550	+	954.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013792, intron 1 of 6)	intron (NM_001013792, intron 1 of 6)	3243.0	NM_001013792	432940.0	Mm.309164	NM_001013792	ENSMUSG00000046034	Otulin	C79097|Fam105b|m3Sapc|m7-1Sapc	OTU deubiquitinase with linear linkage specificity	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3221278-4	chr12	3221188	3221388	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR49|LTR|ERVK	-14503.0	NR_015551	74173.0	Mm.309774	NM_028796	ENSMUSG00000079179	Rab10os	1700012B15Rik|1810036A22Rik	RAB10, member RAS oncogene family, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118692697-2	chr9	118692597	118692797	+	862.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 14 of 27)	MER5A|DNA|hAT-Charlie	-18995.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0.157483942719676	0.593756634338649	0.175795894736838	0.663233084854022	0.333634134802462	1.31165824341978	0.177732812233404	0.170171256266798	1.01398836859242	0.595739351047628	1
Merged-chr5-9071531-4	chr5	9071432	9071632	+	826.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA6|LINE|L1	-29205.0	NM_001081029	652925.0	Mm.439954	NM_001081029	ENSMUSG00000079659	Tmem243	4930420K17Rik|E030031F02Rik	transmembrane protein 243, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124815746-2	chr6	124815646	124815846	+	700.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_013700, intron 19 of 19)	intron (NM_013700, intron 19 of 19)	-1450.0	NM_009415	21991.0	Mm.4222	NM_009415	ENSMUSG00000023456	Tpi1	AI255506|TIM|Tpi|Tpi-1	triosephosphate isomerase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-118650937-4	chr5	118650850	118651050	+	915.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347445, intron 2 of 30)	intron (NM_001347445, intron 2 of 30)	90231.0	NM_172424	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-79120388-8	chr3	79120349	79120549	+	980.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001099624, intron 1 of 23)	intron (NM_001099624, intron 1 of 23)	24438.0	NM_001310536	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	4.64563667064532	4.33168120040514	4.64722888022254	3.65697489076991	4.64675850959978	3.41429068671008	4.76232480383779	3.75712597818965	-0.137318901854036	0.770088537233478	0.998431161219273
Merged-chr12-84176332-4	chr12	84176255	84176455	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163501, intron 1 of 12)	intron (NM_001163501, intron 1 of 12)	17660.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-38384883-4	chr15	38384769	38384969	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-84158.0	NM_001289471	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-28589550-3	chr12	28589468	28589668	+	900.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7085.0	NM_053156	94041.0	Mm.84927	NM_053156	ENSMUSG00000020636	Allc	1700012B22Rik|Alc	allantoicase	protein-coding	1.48124101742674	1.6661952411637	1.1352485543704	2.65001423877867	2.22365077432006	2.69749354985705	2.21686863607283	1.11519359336289	0.700062502688573	0.529096766509739	0.949464880269839
Merged-chr7-16162834-1	chr7	16162734	16162934	+	710.0	f1_balb.idr	Intergenic	B1_Mus1|SINE|Alu	-12561.0	NM_001277988	17537.0	Mm.360516	NM_008627	ENSMUSG00000041420	Meis3	AI573393|Mrg2	Meis homeobox 3	protein-coding	0.949652206936738	0.531123910592102	0.161939583288025	0.156931684431	0.300828989173064	0.169869654914519	0.163368993589305	0.709897025218224	-0.885937114838125	0.657445756515762	1
Merged-chr16-36915399-2	chr16	36915299	36915499	+	706.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_030035, exon 13 of 22)	exon (NM_030035, exon 13 of 22)	-18210.0	NR_040476	68306.0	Mm.399193	NR_040476	ENSMUSG00000084834	4930565N06Rik	4930428L02Rik	RIKEN cDNA 4930565N06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46759672-2	chr19	46759572	46759772	+	799.416626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1937.0	NM_033569	94219.0	Mm.306903	NM_033569	ENSMUSG00000064105	Cnnm2	AU015877|AW048635|Acdp2|Clp2	cyclin M2	protein-coding	1.0845856946273	1.25536839030106	0.595441148080967	0.587858888601391	1.09574598682874	1.2674194577088	0.95318278559163	0.589187344783648	0.380714420670401	0.81030256066481	0.998431161219273
Merged-chr1-172348256-4	chr1	172348106	172348306	+	998.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039484, intron 1 of 1)	intron (NM_001039484, intron 1 of 1)	6996.0	NM_001039484	16513.0	Mm.254563	NM_020269	ENSMUSG00000044708	Kcnj10	BIR10|BIRK-1|Kir1.2|Kir4.1	potassium inwardly-rectifying channel, subfamily J, member 10	protein-coding	-1.1732942548277	-1.14986013130127	-0.995276464399824	-1.16896916428355	-1.03021553592617	-0.982511744906028	-1.15797637436642	-1.00691594849228	1.32941511410654	0.640893797771545	1
Merged-chr10-125966626-1	chr10	125966526	125966726	+	1000.0	f0_balb.idr	exon (NM_177152, exon 1 of 19)	exon (NM_177152, exon 1 of 19)	407.0	NM_177152	320398.0	Mm.275586	NM_177152	ENSMUSG00000020105	Lrig3	9030421L11Rik|9130004I02Rik|9430095K15Rik|mKIAA3016	leucine-rich repeats and immunoglobulin-like domains 3	protein-coding	3.35789925875998	3.24296650658523	3.78807741157228	2.95687105835972	2.63168902765692	1.93191784460182	2.4609616444174	2.52548898750212	-1.73371245679097	0.0109553293056799	0.116046534146157
Merged-chr4-137954697-1	chr4	137954597	137954797	+	1000.0	f1_balb.idr	intron (NM_199307, intron 15 of 19)	intron (NM_199307, intron 15 of 19)	-38759.0	NM_001256198	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	0.56520885017804	2.85168778261433	0.626421677984351	1.46534025295331	1.04474275159649	2.0259780829762	0.632573012813521	0.608228895791207	-1.31508567339947	0.600759649208672	0.972964840983327
Merged-chr16-31897088-2	chr16	31896988	31897188	+	734.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013900, intron 15 of 15)	intron (NM_013900, intron 15 of 15)	18278.0	NM_013900	30060.0	Mm.30988	NM_013900	ENSMUSG00000022780	Meltf	CD228|MTf|Mfi2	melanotransferrin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-100868727-3	chr10	100868630	100868830	+	880.805542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur2|LINE|L1	-127095.0	NR_152765	102639396.0	Mm.404529	NR_152765		Gm35722	-	predicted gene, 35722	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-39372940-4	chr6	39372819	39373019	+	946.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001361617, exon 2 of 17)	5' UTR (NM_001361617, exon 2 of 17)	4516.0	NR_155076	72144.0	Mm.482167	NM_028123	ENSMUSG00000029924	Slc37a3	2610507O21Rik|AU044904	solute carrier family 37 (glycerol-3-phosphate transporter), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-36013012-3	chr4	36012917	36013117	+	913.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166000, intron 7 of 8)	intron (NM_001166000, intron 7 of 8)	-167813.0	NM_175516	242384.0	Mm.132507	NM_175516	ENSMUSG00000045083	Lingo2	B230217C06Rik|Lern3|Lrrn6c	leucine rich repeat and Ig domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-176818341-4	chr1	176818234	176818434	+	963.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357390, intron 1 of 18)	intron (NM_001357390, intron 1 of 18)	3674.0	NM_029756	76816.0	Mm.171399	NM_029756	ENSMUSG00000026504	Sdccag8	2700048G21Rik|5730470G24Rik|Cccap	serologically defined colon cancer antigen 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-152831524-7	chr2	152831423	152831623	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289717)	promoter-TSS (NM_001289717)	205.0	NM_009743	12048.0	Mm.238213	NM_009743	ENSMUSG00000007659	Bcl2l1	Bcl(X)L|Bcl-XL|Bcl2l|BclX|bcl-x|bcl2-L-1	BCL2-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-46091131-2	chr9	46091031	46091231	+	978.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027498, intron 1 of 24)	MTB_Mm|LTR|ERVL-MaLR	78311.0	NM_027498	70661.0	Mm.219459	NM_027498	ENSMUSG00000034135	Sik3	5730525O22Rik|9030204A07Rik|AI447252|AI846254|AI849445|Qsk|SIK-3|mKIAA0999	SIK family kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-119424991-4	chr8	119424899	119425099	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12163.0	NM_027950	71839.0	Mm.272357	NM_027950	ENSMUSG00000074063	Osgin1	1700012B18Rik|Okl38	oxidative stress induced growth inhibitor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-62464673-3	chr18	62464583	62464783	+	636.944458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008313, exon 7 of 7)	3' UTR (NM_008313, exon 7 of 7)	79169.0	NM_001361091	107035.0	Mm.21295	NM_134136	ENSMUSG00000042211	Fbxo38	6030410I24Rik|AU044865|AW214031|Moka|SP329	F-box protein 38	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-80950931-2	chr8	80950782	80950982	+	707.0	f0_balb.idr|f1_balb.idr	Intergenic	ID_B1|SINE|B4	64024.0	NM_027554	74841.0	Mm.246018	NM_027554	ENSMUSG00000038250	Usp38	4631402N15Rik|4833420O05Rik|AA536967|AU044701|AW544820|mKIAA1891	ubiquitin specific peptidase 38	protein-coding	2.25516754622383	1.68858079481498	2.45097551269705	2.38019923679718	1.53065294711749	2.42954245295074	2.58233949738015	3.28342357839494	0.814516466311347	0.356506326071788	0.85378439273359
Merged-chr7-12987407-3	chr7	12987303	12987503	+	990.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009512)	TTS (NM_009512)	9555.0	NM_001168561	269870.0	Mm.62083	NM_175558	ENSMUSG00000033961	Zfp446	A630035I11Rik|A930031C22|AA120513|AV306632	zinc finger protein 446	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41331790-4	chr19	41331590	41331790	+	992.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 3 of 16)	intron (NM_031376, intron 3 of 16)	53380.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	3.40753108727011	3.57457771055745	3.53793598369633	3.94253516665576	3.29224139833143	3.19476093704634	2.5021900284054	4.01164202002986	-0.400971068626328	0.487572351061706	0.932902141745994
Merged-chr5-31699651-3	chr5	31699542	31699742	+	899.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181280, intron 1 of 12)	intron (NM_181280, intron 1 of 12)	1592.0	NM_144541	107976.0	Mm.482126	NM_144541	ENSMUSG00000052139	Babam2	6030405P19Rik|AI429776|B830038C02Rik|Bre	BRISC and BRCA1 A complex member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-142482575-2	chr5	142482475	142482675	+	603.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18644.0	NM_172725	231855.0	Mm.78250	NM_172725	ENSMUSG00000039623	Ap5z1	C330006K01Rik	adaptor-related protein complex 5, zeta 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-81711088-4	chr13	81711045	81711245	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028372)	promoter-TSS (NM_028372)	-132.0	NM_001081176	67486.0	Mm.279781	NM_001081176	ENSMUSG00000035834	Polr3g	2310047G20Rik|AV275904|RPC32|RPC7	polymerase (RNA) III (DNA directed) polypeptide G	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167822528-2	chr2	167822428	167822628	+	604.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-109799.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-102506779-4	chr4	102506682	102506882	+	762.283325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019840, intron 5 of 14)	intron (NM_019840, intron 5 of 14)	-63278.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-79178232-4	chr3	79178146	79178346	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32371.0	NM_001099624	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	5.45616589043137	5.42047589861398	5.26009230946849	4.74232184788547	5.71691492843885	5.91356838288118	6.09346671579797	5.7654252293571	0.713211333215003	0.00904436663498829	0.101352096095818
Merged-chr4-133458219-2	chr4	133458122	133458322	+	882.916626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21911.0	NM_175307	100342.0	Mm.204656	NM_175307	ENSMUSG00000046694	Fam46b	4732473B16Rik|AU045678|AU046069	family with sequence similarity 46, member B	protein-coding	-1.27249645451392	-1.24492317865105	-1.25519852100207	-0.841115942266665	-1.27206413415553	-1.24269646909897	-1.25287240872289	-1.10093787885648	-1.22386990718508	0.717798807396374	1
Merged-chr5-93117806-3	chr5	93117709	93117909	+	737.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001009818, intron 1 of 9)	intron (NM_001009818, intron 1 of 9)	24393.0	NM_001347377	52398.0	Mm.394184	NM_001009818	ENSMUSG00000058013	Sept11	6230410I01Rik|AW548875|D5Ertd606e	septin 11	protein-coding	-0.226235296896101	0.595109062818019	-0.213198233288771	-0.218068504042706	-0.225013795898844	0.608384863201147	-0.211812549537951	-0.217215065379025	0.0395006580732415	0.987233647591244	1
Merged-chr15-77836316-3	chr15	77836229	77836429	+	943.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022410, intron 1 of 40)	intron (NM_022410, intron 1 of 40)	5846.0	NM_022410	17886.0	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-105052225-4	chr3	105052162	105052362	+	863.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030249, intron 1 of 5)	intron (NM_030249, intron 1 of 5)	691.0	NM_001163332	80281.0	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-66945989-4	chr9	66945875	66946075	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311101)	promoter-TSS (NM_001311101)	-111.0	NM_001311101	67941.0	Mm.30120	NM_026467	ENSMUSG00000036781	Rps27l	1810034D23Rik	ribosomal protein S27-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-39001310-2	chr6	39001210	39001410	+	937.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_011539, exon 5 of 13)	exon (NM_011539, exon 5 of 13)	66276.0	NR_040523	69986.0	Mm.490941	NR_040523	ENSMUSG00000100121	1700025N23Rik	-	RIKEN cDNA 1700025N23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-48789361-2	chr11	48789261	48789461	+	868.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10999.0	NM_008143	14694.0	Mm.5305	NM_008143	ENSMUSG00000020372	Rack1	AL033335|GB-like|Gnb2-rs1|Gnb2l1|p205	receptor for activated C kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5491563-4	chr17	5491489	5491689	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1011.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-105626397-4	chr5	105626304	105626504	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73565.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-38402790-2	chr16	38402690	38402890	+	753.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134102, intron 8 of 10)	RMER4B|LTR|ERVK	30355.0	NM_134102	85031.0	Mm.279805	NM_134102	ENSMUSG00000002847	Pla1a	AA986889|Ps-pla1|Pspla1	phospholipase A1 member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-77734653-1	chr9	77734553	77734753	+	617.0	f0_balb.idr	Intergenic	Intergenic	-19882.0	NR_151778	14629.0	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	-0.339181383283341	-0.330178980066488	0.056882200853878	-0.335444788702559	-0.1074342166039	0.100528197870902	-0.33250977969167	-0.33504812445241	0.751397763495101	0.766897050355819	1
Merged-chr8-40496489-1	chr8	40496389	40496589	+	551.0	f0_balb.idr	intron (NR_155265, intron 5 of 6)	intron (NR_155265, intron 5 of 6)	13990.0	NM_001361938	18983.0	Mm.272551	NM_011135	ENSMUSG00000031601	Cnot7	AU022737|CAF-1|Caf1|Pop2	CCR4-NOT transcription complex, subunit 7	protein-coding	-0.268865770319455	-0.255658541826839	0.29756820884272	-0.263332892123019	0.290892558219219	-0.0612605500075511	-0.259038252324208	-0.262749888188097	0.360769722091466	0.883083897143173	1
Merged-chr9-21950458-3	chr9	21950347	21950547	+	776.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5306.0	NM_025870	66962.0	Mm.46647	NM_025870	ENSMUSG00000051238	Swsap1	2310047B19Rik	SWIM type zinc finger 7 associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-96159494-2	chr16	96159394	96159594	+	640.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001001492, exon 11 of 11)	exon (NM_001001492, exon 11 of 11)	14075.0	NM_207301	71446.0	Mm.255063	NM_207301	ENSMUSG00000023147	Wrb	5530402J05Rik|C030018G21Rik|Chd5	tryptophan rich basic protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-110426989-4	chr11	110426892	110427092	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356352, intron 1 of 11)	intron (NM_001356352, intron 1 of 11)	27890.0	NM_001356353	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128273079-3	chr10	128272985	128273185	+	640.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019963, intron 1 of 23)	B2_Mm1a|SINE|B2	2587.0	NM_019963	20847.0	Mm.293120	NM_019963	ENSMUSG00000040033	Stat2	1600010G07Rik|AW496480	signal transducer and activator of transcription 2	protein-coding	0.593658228257849	0.332267724691139	0.324402603033629	0.882734123717717	0.309617868936457	0.334033811500868	0.815991896951414	1.16793674649534	0.875591698045761	0.638620247121994	1
Merged-chr9-3022521-2	chr9	3022422	3022622	+	926.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	GSAT_MM|Satellite|Satellite	16221.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-29967716-2	chr14	29967616	29967816	+	666.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019979)	promoter-TSS (NM_019979)	-664.0	NM_019979	80795.0	Mm.104491	NM_019979	ENSMUSG00000042682	Selenok	1110001C03Rik|AA673253|HSPC030|Hsp30|Selk	selenoprotein K	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-170176962-4	chr1	170176854	170177054	+	943.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1990.0	NM_001305045	107652.0	Mm.27969	NM_133806	ENSMUSG00000026670	Uap1	AA420407|AA437972|AGX-1|AGX-2|AGX1|AgX|ESTM38|SPAG2	UDP-N-acetylglucosamine pyrophosphorylase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-81058895-3	chr7	81058796	81058996	+	929.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054085, intron 1 of 13)	intron (NM_054085, intron 1 of 13)	1296.0	NM_054085	116904.0	Mm.475768	NM_054085	ENSMUSG00000038763	Alpk3	AW319487|D330016D04|MAK|Midori|mKIAA1330	alpha-kinase 3	protein-coding	2.65110872883744	2.69888645353975	3.39646351161118	3.38149570565331	3.37799935704916	3.01259813033944	3.84232119957984	3.8428966540505	0.780262300515412	0.189186873119533	0.667555616405381
Merged-chr15-17605857-2	chr15	17605757	17605957	+	991.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	763770.0	NR_045711	70886.0	Mm.399021	NR_045711	ENSMUSG00000098150	4921515E04Rik	-	RIKEN cDNA 4921515E04 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-98775024-4	chr10	98774938	98775138	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-139604.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167926844-4	chr2	167926813	167927013	+	869.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5414.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91100777-2	chr2	91100678	91100878	+	655.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011355, intron 2 of 4)	intron (NM_011355, intron 2 of 4)	4100.0	NM_011355	20375.0	Mm.1302	NM_011355	ENSMUSG00000002111	Spi1	Dis-1|Dis1|PU.1|Sfpi-1|Sfpi1|Spi-1|Tcfpu1|Tfpu.1	spleen focus forming virus (SFFV) proviral integration oncogene	protein-coding	0.599629121638779	0.324507217399959	0.315695438951009	0.308831277796786	0.607302627045803	1.23491503849791	0.317647021915002	1.11108435611203	2.9936217122418	0.112721420189877	1
Merged-chr9-106221685-1	chr9	106221585	106221785	+	651.0	f1_c57bl6.idr	promoter-TSS (NM_031178)	promoter-TSS (NM_031178)	-913.0	NM_031178	81897.0	Mm.44889	NM_031178	ENSMUSG00000045322	Tlr9	-	toll-like receptor 9	protein-coding	0.581050978908325	1.91042402040306	0.613012552583004	0.601209468513929	1.66060451455797	0.881423630531605	1.0396652078802	1.00059280848089	0.29773880164124	0.84596222388949	0.998431161219273
Merged-chr4-148042218-3	chr4	148042111	148042311	+	842.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027809, intron 2 of 12)	intron (NR_027809, intron 2 of 12)	1022.0	NM_001161798	17769.0	Mm.89959	NM_010840	ENSMUSG00000029009	Mthfr	AI323986	methylenetetrahydrofolate reductase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-105401361-2	chr7	105401261	105401461	+	667.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1307.0	NM_001242363	74349.0	Mm.30254	NM_199009	ENSMUSG00000044465	Fam160a2	4632419K20Rik|6530415H11Rik|FHIP	family with sequence similarity 160, member A2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-100501437-2	chr5	100501337	100501537	+	867.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172714)	promoter-TSS (NM_172714)	-798.0	NM_001359914	231506.0	Mm.212568	NM_172714	ENSMUSG00000035310	Lin54	AI461788	lin-54 homolog (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-93189535-1	chr13	93189435	93189635	+	726.0	f1_c57bl6.idr	intron (NR_154997, intron 1 of 15)	PB1D10|SINE|Alu	2882.0	NM_001361536	100715.0	Mm.242865	NM_133905	ENSMUSG00000042167	Papd4	8030446C20Rik|AI649009|GLD-2|Gld2	PAP associated domain containing 4	protein-coding	-1.50724281320465	-1.1602878815787	-1.32724651802809	-1.49242358196827	-1.50492687755901	-1.47208937792767	-1.48196973581217	-1.49095662705419	-2.1873114604883	0.520281639745184	1
Merged-chr5-144254153-1	chr5	144254053	144254253	+	687.0	f1_balb.idr	intron (NM_001163709, intron 1 of 2)	ID_B1|SINE|B4	-1072.0	NM_018772	55950.0	Mm.38011	NM_018772	ENSMUSG00000047843	Bri3	I3	brain protein I3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-52762719-4	chr2	52762655	52762855	+	887.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20606.0	NM_019667	56324.0	Mm.263639	NM_019667	ENSMUSG00000055371	Stam2	1200004O12Rik|5730456G07Rik|BB145015|Hbp	signal transducing adaptor molecule (SH3 domain and ITAM motif) 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-96132347-4	chr10	96132227	96132427	+	853.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-93880.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-8798399-5	chr5	8798272	8798472	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_152133, exon 1 of 3)	non-coding (NR_152133, exon 1 of 3)	151.0	NR_152133	330031.0	Mm.389059	NR_152132		Gm5106	A230021K14|EG330031	predicted gene 5106	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34639757-4	chr17	34639668	34639868	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5115.0	NM_019873	56299.0	Mm.10025	NM_019873	ENSMUSG00000033739	Fkbpl	DIR1|NG7|Ppiase-X|Wisp39	FK506 binding protein-like	protein-coding	4.17372336126941	4.28178270921729	4.02779103476328	4.53839881114349	4.24704099405115	3.73905859782982	2.93015160349152	2.82845350504922	-0.953228307317792	0.0630476291886567	0.373491830977043
Merged-chr1-78461536-2	chr1	78461436	78461636	+	607.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001278075, intron 13 of 17)	intron (NM_001278075, intron 13 of 17)	27361.0	NR_102758	23874.0	Mm.17898	NM_011811	ENSMUSG00000026245	Farsb	C76708|Farsa|Farsl|Farslb|Frsb	phenylalanyl-tRNA synthetase, beta subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-154572544-4	chr3	154572384	154572584	+	774.270813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24227.0	NM_009968	12972.0	Mm.374855	NM_009968	ENSMUSG00000028199	Cryz	Sez9	crystallin, zeta	protein-coding	2.67854511349497	2.33470010741505	2.68586505644712	3.67358869084509	2.79090561781986	3.02606252700161	2.43639332580238	2.62343230294603	-0.422201080207193	0.558229058644463	0.960321604678676
Merged-chr6-116570064-3	chr6	116569964	116570164	+	677.866638	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12880.0	NM_146446	258438.0	Mm.357743	NM_146446	ENSMUSG00000050654	Olfr215	MOR119-2	olfactory receptor 215	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34334919-2	chr17	34334821	34335021	+	725.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033978, intron 3 of 4)	intron (NM_001033978, intron 3 of 4)	9246.0	NM_001033978	381091.0	Mm.139204	NM_001033978	ENSMUSG00000067341	H2-Eb2	A130038H09Rik|H-2Eb2|Ia-5|Ia5|Iebeta2	histocompatibility 2, class II antigen E beta2	protein-coding	-0.0844841970436557	-0.0552671906360321	-0.06462169855608	-0.0719798111466962	-0.0826002683154014	1.25272595645076	-0.0625411472004507	0.73228660202973	4.44345194723807	0.0407235690441995	1
Merged-chr13-35953115-3	chr13	35953018	35953218	+	940.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-14788.0	NM_029628	76487.0	Mm.44745	NM_029628	ENSMUSG00000050423	Ppp1r3g	1600032L17Rik	protein phosphatase 1, regulatory (inhibitor) subunit 3G	protein-coding	3.33059941089994	4.41919475537529	2.63394413521661	3.26458462140537	3.02696593627171	3.83477188323893	2.9490267165675	3.85300456092897	-0.142910992896944	0.817538793649714	0.998431161219273
Merged-chr3-69171334-4	chr3	69171203	69171403	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40070.0	NR_126533	381452.0	Mm.331067	NM_001243000	ENSMUSG00000094763	Gm1647	-	predicted gene 1647	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-87471614-4	chr11	87471505	87471705	+	977.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199293, intron 2 of 30)	intron (NM_001199293, intron 2 of 30)	44014.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70766771-4	chr14	70766724	70766924	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023045)	promoter-TSS (NM_023045)	-196.0	NM_023045	65246.0	Mm.152987	NM_023045	ENSMUSG00000022100	Xpo7	4930506C02Rik|BB164534|Ranbp16|exp7	exportin 7	protein-coding	4.21812416179384	4.86845970341312	5.08602202360816	4.76695890358174	4.7290663487532	5.47611061126745	5.64906536799142	5.40676249316223	0.696334532453742	0.0421684822527791	0.294149680272584
Merged-chr3-9341059-3	chr3	9340957	9341157	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62021.0	NR_015499	320088.0	Mm.212908	NR_015499	ENSMUSG00000097365	C030034L19Rik	A130044O20Rik	RIKEN cDNA C030034L19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71020741-3	chr17	71020635	71020835	+	927.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083934, intron 1 of 36)	intron (NM_001083934, intron 1 of 36)	1178.0	NM_001083934	17929.0	Mm.4103	NM_010867	ENSMUSG00000024049	Myom1	D430047A17Rik	myomesin 1	protein-coding	0.015051226182587	0.0393015342793647	0.555809383335506	0.0253432294380327	0.336870275075649	0.041055901408703	1.1683101783101	0.0264162346696788	1.86913324792778	0.378476918592078	1
Merged-chr5-65561294-4	chr5	65561212	65561412	+	969.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310618, intron 1 of 4)	RLTR26_Mus|LTR|ERVK	24067.0	NM_001310619	53323.0	Mm.319512	NM_016786	ENSMUSG00000029203	Ube2k	AW492011|D5Ertd601e|E2-25k|HIP-2|Hip2|Hypg|Lig	ubiquitin-conjugating enzyme E2K	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102448420-3	chr12	102448251	102448451	+	816.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-8538.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	1.35738274471384	1.24804162690571	0.810667494526461	1.74451939363713	0.782128424402296	0.82891807705792	1.90644585505511	1.44898893729158	0.025750881440037	0.985553966743664	0.998431161219273
Merged-chr1-97688948-4	chr1	97688837	97689037	+	909.775024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26919.0	NM_133825	52392.0	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81367439-2	chr10	81367339	81367539	+	771.666687	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_019757, exon 14 of 14)	3' UTR (NM_019757, exon 14 of 14)	-1619.0	NM_001014836	432479.0	Mm.440450	NM_001014836	ENSMUSG00000020234	4930404N11Rik	2210409H10Rik|5730551K18Rik|AI854616	RIKEN cDNA 4930404N11 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10056022-2	chr19	10055922	10056122	+	581.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_021890, exon 9 of 12)	exon (NM_021890, exon 9 of 12)	14474.0	NM_021890	60527.0	Mm.253875	NM_021890	ENSMUSG00000024664	Fads3	AI464531	fatty acid desaturase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-94037123-4	chr8	94037022	94037222	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177767)	promoter-TSS (NM_177767)	-76.0	NM_177767	270086.0	Mm.251085	NM_177767	ENSMUSG00000033009	Ogfod1	4930415J21Rik|AA387199|AA939912|AW061076|mKIAA1612	2-oxoglutarate and iron-dependent oxygenase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-108902360-4	chr6	108902237	108902437	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	73696.0	NM_138677	192193.0	Mm.21596	NM_138677	ENSMUSG00000030104	Edem1	A130059K23Rik|EDEM|mKIAA0212	ER degradation enhancer, mannosidase alpha-like 1	protein-coding	5.863507247936	5.62410596718549	5.45937250627024	5.09371220572448	6.33787782092018	6.71963283816712	6.5809703277562	6.06645432446483	0.991315707833881	8.98385190224128e-05	0.00287180075816406
Merged-chr11-118174524-2	chr11	118174424	118174624	+	776.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001112700, intron 10 of 12)	B2_Mm2|SINE|B2	38218.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-6075169-1	chr17	6075069	6075269	+	848.0	f1_c57bl6.idr	intron (NM_001360148, intron 1 of 15)	B4A|SINE|B4	4570.0	NM_001111017	321007.0	Mm.5548	NM_177311	ENSMUSG00000015659	Serac1	4930511N22Rik|D17Ertd141e	serine active site containing 1	protein-coding	1.76861510620068	1.52102713733498	1.60576731743819	2.39012097724724	1.34875788400258	0.887809706150043	0.867921546520635	0.850427809919018	-3.27878495486841	0.0169537049118493	0.158831768505233
Merged-chr13-73821711-2	chr13	73821611	73821811	+	894.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347535, intron 8 of 8)	intron (NM_001347535, intron 8 of 8)	25920.0	NM_028186	72293.0	Mm.45506	NM_028186	ENSMUSG00000021567	Nkd2	2210403L10Rik|AW212591|mNkd2	naked cuticle 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-99375794-3	chr13	99375710	99375910	+	791.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173757, intron 4 of 10)	intron (NM_173757, intron 4 of 10)	31024.0	NM_173757	218506.0	Mm.30208	NM_173757	ENSMUSG00000041632	Mrps27	2610028H14Rik	mitochondrial ribosomal protein S27	protein-coding	2.36470990172357	2.11372539634643	2.04261976232292	2.38740794231416	2.28213971974985	1.43339968454528	3.15712086355244	2.92985248496133	0.811812781293718	0.356059610740603	0.853717667798913
Merged-chr3-65355584-1	chr3	65355484	65355684	+	785.0	f1_balb.idr	intron (NM_001357358, intron 8 of 13)	intron (NM_001357358, intron 8 of 13)	-6155.0	NR_040390	319798.0	Mm.445698	NR_040390		A730090N16Rik	-	RIKEN cDNA A730090N16 gene	ncRNA	0.903034759537272	1.188571259857	0.754933765077392	1.49057927070865	1.5937046792533	0.772352729612507	1.84504322762721	0.948920785549452	0.964485931162834	0.489415960803375	0.934233058307661
Merged-chr12-55024230-1	chr12	55024130	55024330	+	683.0	f1_balb.idr	Intergenic	RMER15|LTR|ERVL	-37894.0	NM_013815	217578.0	Mm.479583	NM_013815	ENSMUSG00000035021	Baz1a	Acf1|B930060C03|BC065123|Gtl5|Wcrf180|cbp146	bromodomain adjacent to zinc finger domain 1A	protein-coding	-0.558891316947453	-0.547007468302191	0.131332304901646	-0.553903441349052	-0.558149224671819	-0.54613025540257	-0.550041153764933	-0.113622183070024	-0.838722488938556	0.765428088282218	1
Merged-chr12-71968802-4	chr12	71968699	71968899	+	934.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026102, intron 17 of 25)	intron (NM_026102, intron 17 of 25)	79256.0	NM_001286452	208846.0	Mm.87417	NM_026102	ENSMUSG00000034574	Daam1	-	dishevelled associated activator of morphogenesis 1	protein-coding	-0.365673333563135	0.251134450822156	-0.357343293467131	-0.36047887332338	-0.0978457566625967	0.00296189116403942	-0.356446017779985	-0.359931450023345	-0.197611414528098	0.937145064423487	1
Merged-chr2-144188392-4	chr2	144188340	144188540	+	958.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_136884, intron 1 of 3)	(TG)n|Simple_repeat|Simple_repeat	850.0	NR_136884	433481.0	Mm.330630	NR_136884	ENSMUSG00000074758	Gm5535	EG433481	predicted gene 5535	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-74994308-4	chr11	74994211	74994411	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001002764, intron 10 of 18)	intron (NM_001002764, intron 10 of 18)	68439.0	NM_001002764	103677.0	Mm.288460	NM_001002764	ENSMUSG00000038290	Smg6	AI317223|AU041178	Smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-64376688-2	chr13	64376575	64376775	+	728.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6155.0	NM_009984	13039.0	Mm.930	NM_009984	ENSMUSG00000021477	Ctsl	1190035F06Rik|CatL|Ctsl1|MEP|fs|nkt	cathepsin L	protein-coding	1.01162962990106	0.608042482031082	1.24564903218424	0.587310276521994	0.747985072465723	1.5424336448652	1.3723538903126	0.58890791958474	1.01291119192351	0.517789271363233	0.947641799425091
Merged-chr9-110707814-2	chr9	110707714	110707914	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028312, intron 2 of 6)	intron (NM_028312, intron 2 of 6)	34796.0	NM_001083936	19228.0	Mm.3542	NM_011199	ENSMUSG00000032492	Pth1r	PPR|Pthr|Pthr1	parathyroid hormone 1 receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-142904020-2	chr5	142903920	142904120	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007393, intron 5 of 5)	intron (NM_007393, intron 5 of 5)	2734.0	NM_007393	11461.0	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-36936546-4	chr8	36936471	36936671	+	824.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001194940, intron 2 of 17)	intron (NM_001194940, intron 2 of 17)	15871.0	NM_001194940	50768.0	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	1.32846165075857	1.33744366982985	2.14382953927155	0.879052192486059	1.45879637280851	1.51218468973877	0.895929709264914	1.53927176849528	-0.487320604810248	0.704138718193712	0.998431161219273
Merged-chr10-44325163-2	chr10	44325063	44325263	+	807.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001314013, intron 5 of 6)	intron (NM_001314013, intron 5 of 6)	-34513.0	NR_035450	100316688.0		NR_035450	ENSMUSG00000089260	Mir1929	mir-1929|mmu-mir-1929	microRNA 1929	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78271715-3	chr15	78271617	78271817	+	947.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13132.0	NR_106137	102465776.0		NR_106137	ENSMUSG00000098996	Mir7676-1	Gm27600|mmu-mir-7676-1	microRNA 7676-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-108002058-4	chr9	108001979	108002179	+	966.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013785)	promoter-TSS (NM_013785)	-569.0	NM_013785	27399.0	Mm.276155	NM_013785	ENSMUSG00000032594	Ip6k1	1200016D08Rik|AU022776|Ihpk1|InsP6|InsP6k1|Itpk6	inositol hexaphosphate kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-12013411-4	chr19	12013316	12013516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23324.0	NM_146680	258675.0	Mm.271517	NM_146680	ENSMUSG00000067529	Olfr1423	MOR239-3	olfactory receptor 1423	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115536874-2	chr5	115536774	115536974	+	736.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011223, intron 1 of 10)	RLTR18|LTR|ERVK	-22593.0	NM_007475	11837.0	Mm.5286	NM_007475	ENSMUSG00000067274	Rplp0	36B4|Arbp|L10E	ribosomal protein, large, P0	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-14702091-2	chr14	14702002	14702202	+	632.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360516)	promoter-TSS (NM_001360516)	-923.0	NM_001360505	218756.0	Mm.258893	NM_001033270	ENSMUSG00000021733	Slc4a7	E430014N10Rik|NBC3|NBCn1|NBCn1-G|Tg(Thy1-SNCA)12Mjff	solute carrier family 4, sodium bicarbonate cotransporter, member 7	protein-coding	-0.220486378234803	-0.199518404921257	0.176274065992252	-0.211590008473721	-0.043568900827012	0.934575698774582	-0.204797501612989	-0.210662248669008	2.31562427283557	0.311145920826023	1
Merged-chr10-117285133-4	chr10	117285032	117285232	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2860.0	NM_017372	17105.0	Mm.45436	NM_017372	ENSMUSG00000069516	Lyz2	AI326280|Lys|Lysm|Lyzf2|Lyzs|Lzm|Lzm-s1|Lzp	lysozyme 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125447438-4	chr6	125447328	125447528	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47332.0	NM_007657	12527.0	Mm.210676	NM_007657	ENSMUSG00000030342	Cd9	Tspan29	CD9 antigen	protein-coding	3.54483418057653	3.49661534409971	3.548322748059	3.66237241968043	3.14562109799119	3.08648613153594	3.4941180857175	3.7430888211147	-0.26102154747344	0.62344906128879	0.980259659844413
Merged-chr15-9138383-3	chr15	9138251	9138451	+	781.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013787, intron 2 of 9)	L2a|LINE|L2	2103.0	NM_013787	27401.0	Mm.35584	NM_013787	ENSMUSG00000054115	Skp2	4930500A04Rik|FBXL1|FWD1|p45	S-phase kinase-associated protein 2 (p45)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-136134179-2	chr1	136134079	136134279	+	991.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039472, intron 1 of 34)	intron (NM_001039472, intron 1 of 34)	2789.0	NR_153829	16565.0	Mm.276135	NM_019962	ENSMUSG00000041642	Kif21b	2610511N21Rik|mKIAA0449	kinesin family member 21B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-113035955-3	chr5	113035847	113036047	+	847.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20409.0	NM_177078	320129.0	Mm.285619	NM_177078	ENSMUSG00000042249	Grk3	4833444A01Rik|AI851927|AW551196|Adrbk-2|Adrbk2|Bark-2	G protein-coupled receptor kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-86612142-4	chr4	86612043	86612243	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173400)	promoter-TSS (NM_173400)	-88.0	NM_173400	230376.0	Mm.74730	NM_173400	ENSMUSG00000038047	Haus6	6230416J20Rik|9830144E06|D4Ertd27e|mKIAA1574	HAUS augmin-like complex, subunit 6	protein-coding	5.6375917913634	6.28432019248038	6.15483469911605	6.29727334760692	5.52837550483699	5.14455121680571	6.11740183874288	6.1135616436751	-0.359468474662449	0.19355993097334	0.673158288239418
Merged-chr5-105718480-4	chr5	105718370	105718570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178701, intron 1 of 2)	intron (NM_178701, intron 1 of 2)	17660.0	NM_178701	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-46396686-2	chr18	46396586	46396786	+	716.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	69130.0	NR_045438	72076.0	Mm.82766	NM_028086		Mospd4	2010013H21Rik	motile sperm domain containing 4	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-13391103-3	chr15	13390991	13391191	+	628.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	-217416.0	NM_007666	12563.0	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-193173109-3	chr1	193173009	193173209	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181048)	promoter-TSS (NM_181048)	-360.0	NM_001160360	319266.0	Mm.482460	NM_181048	ENSMUSG00000079144	A130010J15Rik	-	RIKEN cDNA A130010J15 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-121171584-2	chr2	121171484	121171684	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290819)	promoter-TSS (NM_001290819)	416.0	NM_001290824	51885.0	Mm.383499	NM_153387	ENSMUSG00000027263	Tubgcp4	4932441P04Rik|76p|D2Ertd435e|GCP-4	tubulin, gamma complex associated protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-12236462-4	chr18	12236349	12236549	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008720)	promoter-TSS (NM_008720)	-63.0	NM_008720	18145.0	Mm.3484	NM_008720	ENSMUSG00000024413	Npc1	A430089E03Rik|C85354|D18Ertd139e|D18Ertd723e|lcsd|nmf164|spm	NPC intracellular cholesterol transporter 1	protein-coding	6.40939143493051	6.28057737733871	6.25948304399703	6.20535432957836	5.99364896206723	6.51654297633519	6.52303672039543	6.05560624961874	-0.0070341835007952	0.974326081989997	0.998431161219273
Merged-chr7-24507526-4	chr7	24507442	24507642	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110958, intron 1 of 2)	CpG	455.0	NR_110958	232969.0	Mm.181332	NM_146183	ENSMUSG00000064264	Zfp428	2410005H09Rik|AV271806|AW047854|Znf428	zinc finger protein 428	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124834239-2	chr6	124834139	124834339	+	841.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_013530)	TTS (NM_013530)	4063.0	NM_013538	14793.0	Mm.285723	NM_013538	ENSMUSG00000023505	Cdca3	2410005A12Rik|C8|Grcc8|Tome-1	cell division cycle associated 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-62867519-2	chr11	62867419	62867619	+	660.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033669, intron 8 of 12)	intron (NM_001033669, intron 8 of 12)	-11936.0	NM_001356520	67510.0	Mm.9806	NM_026210	ENSMUSG00000014177	Tvp23b	1810036I24Rik|Fam18b|Fam18b1	trans-golgi network vesicle protein 23B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-82950680-2	chr11	82950580	82950780	+	550.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045932, intron 1 of 2)	B4|SINE|B4	-1422.0	NM_183201	327978.0	Mm.42147	NM_183201	ENSMUSG00000054404	Slfn5	AI956840	schlafen 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-101802901-3	chr3	101802801	101803001	+	895.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33322.0	NM_172295	242125.0	Mm.32900	NM_172295	ENSMUSG00000044313	Mab21l3	-	mab-21-like 3 (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114965653-4	chr11	114965555	114965755	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5238.0	NM_199225	387565.0	Mm.351450	NM_199225	ENSMUSG00000058728	Cd300c	Clm6	CD300C molecule	protein-coding	7.01258327524113	6.98478983770767	7.00722330538164	6.87468577643203	7.02885628643372	7.44844802784652	7.39822930937561	7.67712864827319	0.454179676925044	0.00862855451960475	0.097973561949102
Merged-chr11-52360196-2	chr11	52360096	52360296	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011694)	promoter-TSS (NM_011694)	-666.0	NM_011694	22333.0	Mm.3555	NM_011694	ENSMUSG00000020402	Vdac1	AL033343|Vdac5|mVDAC1|mVDAC5	voltage-dependent anion channel 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-120150419-4	chr7	120150319	120150519	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5128.0	NM_011775	22787.0	Mm.6510	NM_011775	ENSMUSG00000030911	Zp2	Zp-2	zona pellucida glycoprotein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-82984169-2	chr8	82984069	82984269	+	688.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177378, intron 1 of 6)	intron (NM_177378, intron 1 of 6)	120813.0	NM_177378	330812.0	Mm.491438	NM_177378	ENSMUSG00000047747	Rnf150	A630007N06Rik|C030044C12Rik|Greul5|mKIAA1214	ring finger protein 150	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-149324029-2	chr6	149323930	149324130	+	549.5	f0_balb.idr|f1_balb.idr	intron (NM_026054, intron 2 of 4)	intron (NM_026054, intron 2 of 4)	14616.0	NM_001289662	67246.0	Mm.333515	NM_026054	ENSMUSG00000032712	2810474O19Rik	6720435I21Rik|AA536804|AU020969|GET|Kiaa1551	RIKEN cDNA 2810474O19 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-27317812-2	chr6	27317712	27317912	+	550.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361125, intron 9 of 10)	intron (NM_001361125, intron 9 of 10)	618938.0	NR_030420	735266.0		NR_030420	ENSMUSG00000076067	Mir592	Mirn592|mir-592|mmu-mir-592	microRNA 592	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28738145-4	chr17	28738048	28738248	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168513, intron 9 of 11)	intron (NM_001168513, intron 9 of 11)	-31169.0	NM_011950	26415.0	Mm.27970	NM_011950	ENSMUSG00000004864	Mapk13	SAPK4|Serk4	mitogen-activated protein kinase 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-62191683-4	chr18	62191590	62191790	+	965.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11590.0	NM_001013754	225609.0	Mm.296917	NM_001013754	ENSMUSG00000054589	Gm9949	EG225609	predicted gene 9949	protein-coding	3.1769490573461	2.58558158578213	2.49306141838827	3.5441846631994	3.39612235887801	3.85014809865809	3.13205446203915	1.84577116744405	0.346303233094134	0.630978091513636	0.981518867753619
Merged-chr17-79896107-4	chr17	79895985	79896185	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286647)	promoter-TSS (NM_001286647)	38.0	NM_178050	56298.0	Mm.175403	NM_019717	ENSMUSG00000059811	Atl2	2010110I21Rik|AA407293|AV334690|Aip-2|Arl6ip2	atlastin GTPase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-38650545-4	chr15	38650443	38650643	+	920.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11361.0	NM_025494	66335.0	Mm.276618	NM_025494	ENSMUSG00000022295	Atp6v1c1	1700025B18Rik|U13839	ATPase, H+ transporting, lysosomal V1 subunit C1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19026172-2	chr7	19026072	19026272	+	774.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360713, intron 1 of 22)	RMER17C2|LTR|ERVK	1795.0	NM_026605	68188.0	Mm.130902	NM_026605	ENSMUSG00000023118	Sympk	1500016F02Rik|4632415H16Rik|AA125406|AI449890|SPK|SYM	symplekin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-52924060-1	chr3	52923960	52924160	+	594.0	f0_balb.idr	intron (NR_040555, intron 2 of 4)	intron (NR_040555, intron 2 of 4)	3606.0	NR_040555	622124.0	Mm.389434	NR_040555	ENSMUSG00000104401	Gm20750	-	predicted gene, 20750	ncRNA	-0.986117776978398	-1.33156256825259	-1.34133402424827	-1.34936058913999	-1.21427833167172	-1.32944505297573	-1.33912198079506	-1.34792383786197	-0.98711403806483	0.775821656509867	1
Merged-chr6-76269143-3	chr6	76269047	76269247	+	939.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-973330.0	NR_155299	74342.0	Mm.292568	NM_028880	ENSMUSG00000060780	Lrrtm1	4632401D06Rik|AW125451	leucine rich repeat transmembrane neuronal 1	protein-coding	2.02391860387987	2.0914022362538	2.53427106903611	2.58781846483569	3.63934722197751	2.64928077564446	2.55555160473084	3.93706406270749	1.83476478989769	0.0126975276812054	0.128887425650678
Merged-chr3-132085332-3	chr3	132085227	132085427	+	821.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020265)	promoter-TSS (NM_020265)	35.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-189675572-3	chr1	189675487	189675687	+	730.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081363, intron 7 of 17)	intron (NM_001081363, intron 7 of 17)	12499.0	NM_001081363	108000.0	Mm.129746	NM_001081363	ENSMUSG00000026605	Cenpf	6530404A22Rik|AI325968|CENF|Lek1|PRO1779|mitosin	centromere protein F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76209286-2	chr15	76209186	76209386	+	606.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_201386)	promoter-TSS (NM_201386)	-121.0	NM_201386	18810.0	Mm.234912	NM_011117	ENSMUSG00000022565	Plec	AA591047|AU042537|EBS1|PCN|PLTN|Plec1	plectin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-52141402-4	chr14	52141291	52141491	+	930.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023879, intron 14 of 24)	intron (NM_023879, intron 14 of 24)	30488.0	NM_023879	77945.0	Mm.21662	NM_023879	ENSMUSG00000057132	Rpgrip1	0610005A07Rik|4930401L23Rik|4930505G06Rik|A930002K18Rik|AA415034|nmf247	retinitis pigmentosa GTPase regulator interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-84096650-5	chr17	84096542	84096742	+	733.133301	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	17982.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166976555-4	chr2	166976470	166976670	+	949.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109905, intron 1 of 11)	intron (NM_001109905, intron 1 of 11)	-11853.0	NR_111895	20853.0	Mm.73276	NM_011490	ENSMUSG00000039536	Stau1	5830401L18Rik|AW549911|C85792|Stau	staufen double-stranded RNA binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34936183-1	chr17	34936083	34936283	+	542.0	f1_c57bl6.idr	3' UTR (NM_010893, exon 6 of 6)	3' UTR (NM_010893, exon 6 of 6)	4930.0	NM_010893	18010.0	Mm.8856	NM_010893	ENSMUSG00000007038	Neu1	AA407268|AA407316|Aglp|Apl|Bat-7|Bat7|G9|Map-2|Neu|Neu-1	neuraminidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-75833082-3	chr14	75832976	75833176	+	893.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11888.0	NR_045294	100043189.0	Mm.426329	NR_045294		Gm4285	-	predicted gene 4285	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-90040659-4	chr7	90040566	90040766	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110365, intron 3 of 5)	intron (NR_110365, intron 3 of 5)	11507.0	NR_110364	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	4.64661019097328	3.15936488178212	4.25361342645315	5.45300814507959	4.27664884949473	4.65868703004009	5.09543104391038	4.66122333944773	0.0968975581579417	0.835737516446143	0.998431161219273
Merged-chr5-117355677-2	chr5	117355577	117355777	+	546.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001033311)	TTS (NM_001033311)	-1628.0	NM_021539	59043.0	Mm.28489	NM_021539	ENSMUSG00000029364	Wsb2	AA673511|Swip2|WSB-2	WD repeat and SOCS box-containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-103171711-4	chr3	103171651	103171851	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026602)	promoter-TSS (NM_026602)	96.0	NM_001356331	68183.0	Mm.104919	NM_026602	ENSMUSG00000005687	Bcas2	6430539P16Rik|AI132645|C76366|C80030	breast carcinoma amplified sequence 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70776757-2	chr11	70776657	70776857	+	561.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12310.0	NM_177565	193043.0	Mm.40966	NM_177565	ENSMUSG00000043602	Zfp3	AI854635|B230309J24|Fnp-1|Zfp-3	zinc finger protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-127923378-3	chr3	127923297	127923497	+	795.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040552, intron 1 of 4)	intron (NR_040552, intron 1 of 4)	7226.0	NR_040552	329753.0	Mm.119720	NR_040552	ENSMUSG00000104763	9830132P13Rik	9830132P13	RIKEN cDNA 9830132P13 gene	ncRNA	3.40303037994634	3.03913322826381	2.68196367220452	3.89478830411386	3.36962460249841	3.06190860114329	1.95453907711309	3.3245361141142	-0.488303136437756	0.47026536569681	0.925692944111129
Merged-chr4-109201333-2	chr4	109201233	109201433	+	655.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346502, intron 1 of 23)	intron (NM_001346502, intron 1 of 23)	939.0	NM_133885	100273.0	Mm.366315	NM_133885	ENSMUSG00000028559	Osbpl9	2600011I06Rik|AU015843|Orp-9	oxysterol binding protein-like 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71388456-3	chr8	71388341	71388541	+	873.9722289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181418, intron 9 of 12)	MTE2b|LTR|ERVL-MaLR	-6489.0	NM_010150	13864.0	Mm.28989	NM_010150	ENSMUSG00000002393	Nr2f6	AV090102|COUP-TF3|EAR2|Erbal2	nuclear receptor subfamily 2, group F, member 6	protein-coding	3.10963385635842	2.50062395183682	2.88877902175353	2.90050770050608	2.77977170125942	2.35601046857389	2.80942004693045	2.72593295989127	-0.373618834306468	0.588141801586087	0.968410553480753
Merged-chr13-107763342-1	chr13	107763242	107763442	+	665.0	f0_balb.idr	intron (NM_145456, intron 5 of 14)	intron (NM_145456, intron 5 of 14)	75945.0	NR_045900	72257.0	Mm.234155	NR_045900	ENSMUSG00000102000	1700006H21Rik	-	RIKEN cDNA 1700006H21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123079858-4	chr5	123079754	123079954	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039723, intron 1 of 11)	intron (NM_001039723, intron 1 of 11)	3579.0	NM_001039723	330189.0	Mm.391872	NM_001039723	ENSMUSG00000054434	Tmem120b	-	transmembrane protein 120B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-72938972-4	chr14	72938896	72939096	+	933.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR11A2|LTR|ERVK	-86607.0	NR_027860	668489.0	Mm.158324	NR_027860		Gm9199	EG668489	glycine cleavage system protein H (aminomethyl carrier) pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-69453837-8	chr9	69453712	69453912	+	834.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007585, intron 1 of 12)	CpG	129.0	NM_007585	12306.0	Mm.238343	NM_007585	ENSMUSG00000032231	Anxa2	AW215814|Cal1h	annexin A2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-93230743-4	chr13	93230627	93230827	+	974.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	-38310.0	NM_001361537	100715.0	Mm.242865	NM_133905	ENSMUSG00000042167	Papd4	8030446C20Rik|AI649009|GLD-2|Gld2	PAP associated domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-89852962-4	chr5	89852888	89853088	+	941.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081401, intron 3 of 21)	intron (NM_001081401, intron 3 of 21)	30346.0	NM_177872	330119.0	Mm.133062	NM_177872	ENSMUSG00000043635	Adamts3	1100001H14Rik|6330442E02Rik	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 3	protein-coding	3.48196704066805	4.20245383616457	2.01953241274735	3.73305855442866	3.57482285916839	4.05709961694579	2.6610605684082	3.92923758118532	0.127734192714933	0.842197600220913	0.998431161219273
Merged-chr11-78806034-1	chr11	78805934	78806134	+	560.0	f0_balb.idr	Intergenic	MIR|SINE|MIR	-20561.0	NM_001076681	66274.0	Mm.258932	NM_001076681	ENSMUSG00000072640	Lyrm9	1810012P15Rik	LYR motif containing 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-73408424-3	chr14	73408309	73408509	+	627.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-23120.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-23760874-2	chr13	23760794	23760994	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_013550)	TTS (NM_013550)	355.0	NM_178192	326619.0	Mm.228709	NM_178192	ENSMUSG00000060093	Hist1h4a	-	histone cluster 1, H4a	protein-coding	1.41331921511546	1.05475687244164	0.852477421708539	1.00809630389736	1.33176645242823	0.864444080924869	1.78878403761602	1.50313966599467	1.41928193643395	0.302018845367687	0.803939233853314
Merged-chr18-36400679-2	chr18	36400579	36400779	+	959.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52055.0	NM_001081365	66060.0	Mm.272527	NM_001081365	ENSMUSG00000046727	Cystm1	0610010O12Rik	cysteine-rich transmembrane module containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-77391284-4	chr10	77391189	77391389	+	998.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024838, intron 1 of 11)	L1MC3|LINE|L1	26984.0	NM_130895	110532.0	Mm.276815	NM_130895	ENSMUSG00000020262	Adarb1	1700057H01Rik|AW124433|AW558573|Adar2|BB220382|D10Bwg0447e|Red1	adenosine deaminase, RNA-specific, B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-52094895-4	chr16	52094787	52094987	+	920.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033238, intron 3 of 17)	intron (NM_001033238, intron 3 of 17)	63338.0	NM_001033238	208650.0	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84002836-1	chr8	84002736	84002936	+	928.0	f1_balb.idr	intron (NM_183097, intron 1 of 5)	intron (NM_183097, intron 1 of 5)	1130.0	NM_183097	73453.0	Mm.75101	NM_183097	ENSMUSG00000046408	1700067K01Rik	-	RIKEN cDNA 1700067K01 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-73667769-4	chr12	73667687	73667887	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008856, intron 2 of 13)	intron (NM_008856, intron 2 of 13)	82991.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56714048-2	chr17	56713948	56714148	+	551.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_178926, exon 2 of 2)	3' UTR (NM_178926, exon 2 of 2)	2873.0	NM_178926	106639.0	Mm.37290	NM_178926	ENSMUSG00000054723	Vmac	AI662250	vimentin-type intermediate filament associated coiled-coil protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5937665-2	chr17	5937565	5937765	+	722.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3615.0	NM_001113353	20975.0	Mm.236068	NM_011523	ENSMUSG00000023805	Synj2	AI481647|SJ2|mKIAA0348	synaptojanin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-92821820-1	chr16	92821720	92821920	+	572.0	f0_balb.idr	intron (NM_001111022, intron 2 of 6)	intron (NM_001111022, intron 2 of 6)	4254.0	NM_001111021	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-130001542-4	chr5	130001457	130001657	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357027, intron 1 of 2)	intron (NM_001357027, intron 1 of 2)	1492.0	NM_010368	110006.0	Mm.3317	NM_010368	ENSMUSG00000025534	Gusb	AI747421|Gur|Gus|Gus-r|Gus-s|Gus-t|Gus-u|Gut|asd|g	glucuronidase, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115933594-4	chr11	115933502	115933702	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020483)	promoter-TSS (NM_020483)	-57.0	NM_020483	57230.0	Mm.267810	NM_020483	ENSMUSG00000020755	Sap30bp	2700016D05Rik|Hcngp	SAP30 binding protein	protein-coding	4.54705049109261	4.63204679729593	3.42893603719351	4.0172596606339	4.15724848495758	4.61607624447416	3.34966551501007	3.12325627672687	-0.394319972389638	0.447335020404736	0.914498173479176
Merged-chr2-167483757-2	chr2	167483657	167483857	+	887.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_170756, exon 3 of 3)	exon (NM_170756, exon 3 of 3)	-8888.0	NM_030743	81018.0	Mm.22225	NM_030743	ENSMUSG00000006418	Rnf114	1110008J21Rik|AI225886|AW549494|Zfp228|Zfp313|Znf228	ring finger protein 114	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-39301701-3	chr6	39301606	39301806	+	793.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	75729.0	NR_155076	72144.0	Mm.482167	NM_028123	ENSMUSG00000029924	Slc37a3	2610507O21Rik|AU044904	solute carrier family 37 (glycerol-3-phosphate transporter), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80899229-2	chr10	80899129	80899329	+	773.75	f1_balb.idr|f1_c57bl6.idr	TTS (NM_013895)	TTS (NM_013895)	1740.0	NM_013895	30055.0	Mm.142132	NM_013895	ENSMUSG00000020219	Timm13	D10Ertd378e|Tim9|Timm9	translocase of inner mitochondrial membrane 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81128641-2	chr10	81128541	81128741	+	697.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7630.0	NM_010731	16969.0	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-80069343-4	chr12	80069235	80069435	+	985.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43678.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-87546933-4	chr6	87546858	87547058	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13699.0	NM_001286610	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-78983560-1	chr11	78983460	78983660	+	582.0	f0_c57.idr	intron (NM_010708, intron 1 of 10)	intron (NM_010708, intron 1 of 10)	1364.0	NM_001159301	16859.0	Mm.341434	NM_010708	ENSMUSG00000001123	Lgals9	AA407335|AI194909|AI265545|LGALS35|Lgals5|gal-9|galectin-9	lectin, galactose binding, soluble 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117334235-4	chr11	117334113	117334313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113488, intron 1 of 9)	intron (NM_001113488, intron 1 of 9)	1900.0	NM_001113488	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-98963849-2	chr7	98963749	98963949	+	646.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 12 of 14)	RLTR44A|LTR|ERVK	125004.0	NM_001285795	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-55289345-2	chr6	55289245	55289445	+	628.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001142781, intron 13 of 17)	intron (NM_001142781, intron 13 of 17)	-46954.0	NM_007472	11826.0	Mm.18625	NM_007472	ENSMUSG00000004655	Aqp1	CHIP28	aquaporin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-59925427-4	chr2	59925256	59925456	+	923.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001182, intron 20 of 35)	intron (NM_001001182, intron 20 of 35)	-42750.0	NM_028118	72137.0	Mm.288734	NM_028118	ENSMUSG00000026988	Wdsub1	1700048E19Rik|2610014F08Rik	WD repeat, SAM and U-box domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-145233673-2	chr5	145233573	145233773	+	804.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028298, intron 2 of 3)	intron (NM_028298, intron 2 of 3)	1914.0	NM_028298	72611.0	Mm.206555	NM_028298	ENSMUSG00000007812	Zfp655	2700038I16Rik|9030409O18Rik|mKIAA4222	zinc finger protein 655	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-41505878-3	chr13	41505748	41505948	+	960.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18488.0	NM_001111324	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-97325764-1	chr7	97325664	97325864	+	562.0	f1_balb.idr	exon (NM_001177412, exon 1 of 10)	exon (NM_001177412, exon 1 of 10)	200.0	NM_001177412	244144.0	Mm.297541	NM_001177412	ENSMUSG00000035713	Usp35	Gm1088|Gm493	ubiquitin specific peptidase 35	protein-coding	-0.540710759612069	-0.798206832284532	-0.801339542726913	-0.803753038916332	-0.155416460870771	-0.79591658280398	-0.800649031284367	-0.803331630903372	1.44843509306018	0.63193334779774	1
Merged-chr15-102204115-4	chr15	102204029	102204229	+	942.6416630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289695)	promoter-TSS (NM_001289695)	129.0	NM_001358674	68744.0	Mm.352945	NM_153194	ENSMUSG00000046897	Zfp740	1110034O07Rik|AW548228|Znf740	zinc finger protein 740	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150583680-4	chr4	150583625	150583825	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 12 of 22)	intron (NM_001085492, intron 12 of 22)	68449.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-53529668-4	chr15	53529567	53529767	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177225, intron 4 of 4)	intron (NM_177225, intron 4 of 4)	84612.0	NR_039538	100628567.0		NR_039538	ENSMUSG00000104794	Mir28c	mmu-mir-28c	microRNA 28c	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-184260932-3	chr1	184260851	184261051	+	801.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	226570.0	NM_022019	63953.0	Mm.404024	NM_022019	ENSMUSG00000039384	Dusp10	2610306G15Rik|AI158871|MKP-5|MKP5	dual specificity phosphatase 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124931357-4	chr6	124931264	124931464	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001170341)	promoter-TSS (NM_001170341)	-24.0	NM_145385	30853.0	Mm.29737	NM_145385	ENSMUSG00000030120	Mlf2	AI256856|AU018944|C77284	myeloid leukemia factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-111933785-4	chr8	111933695	111933895	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033321)	promoter-TSS (NM_001033321)	18.0	NM_001357348	234740.0	Mm.87513	NM_001033321	ENSMUSG00000031951	Tmem231	4932417I16Rik|Gm178	transmembrane protein 231	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-88563643-2	chr5	88563543	88563743	+	590.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-1397.0	NM_001289774	52822.0	Mm.270469	NM_027530	ENSMUSG00000029291	Rufy3	2810428M05Rik|6330416M07Rik|AW455998|AW538594|D5Bwg0860e|Ripx|Rpipx	RUN and FYVE domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80176647-2	chr7	80176547	80176747	+	589.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10194.0	NM_013659	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-97111195-4	chr9	97111098	97111298	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138756)	promoter-TSS (NM_138756)	-157.0	NM_138756	192287.0	Mm.228067	NM_138756	ENSMUSG00000032449	Slc25a36	C330005L02Rik	solute carrier family 25, member 36	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90581368-5	chr2	90581321	90581521	+	927.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008982)	promoter-TSS (NM_008982)	-774.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-55777728-2	chr16	55777628	55777828	+	676.700012	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	44410.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-53563227-3	chr11	53563127	53563327	+	966.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B2|LTR|ERVK	-4142.0	NM_008443	16568.0	Mm.88694	NM_008443	ENSMUSG00000018395	Kif3a	Kif3|Kifl|Kns3	kinesin family member 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5423147-2	chr19	5423047	5423247	+	547.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_015545)	TTS (NR_015545)	1832.0	NM_024176	66556.0	Mm.275446	NM_024176	ENSMUSG00000024914	Drap1	2310074H19Rik|NC2-alpha	Dr1 associated protein 1 (negative cofactor 2 alpha)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52818958-1	chr13	52818858	52819058	+	553.0	f0_balb.idr	Intergenic	Intergenic	-61753.0	NR_027893	105404.0	Mm.184173	NR_027893		BB123696	-	expressed sequence BB123696	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-35057772-2	chr7	35057672	35057872	+	743.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1206.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-74362858-4	chr1	74362800	74363000	+	899.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001033345, exon 3 of 10)	exon (NM_001033345, exon 3 of 10)	792.0	NM_001033345	241112.0	Mm.310460	NM_001033345	ENSMUSG00000073650	Catip	Gm216	ciliogenesis associated TTC17 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28867691-2	chr17	28867591	28867791	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001034885, intron 1 of 9)	intron (NM_001034885, intron 1 of 9)	9280.0	NM_001034885	433091.0	Mm.328925	NM_001034885	ENSMUSG00000043286	Pnpla1	-	patatin-like phospholipase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-35099999-4	chr4	35099899	35100099	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178061, intron 1 of 3)	intron (NM_178061, intron 1 of 3)	-52056.0	NM_199157	387510.0	Mm.386929	NM_199157	ENSMUSG00000042993	Ifnk	-	interferon kappa	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-146484030-2	chr4	146483930	146484130	+	666.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17970.0	NM_001243138	100041433.0	Mm.441741	NM_001243138	ENSMUSG00000056300	Zfp981	Gm13247	zinc finger protein 981	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127569670-4	chr10	127569601	127569801	+	804.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 34 of 88)	intron (NM_008512, intron 34 of 88)	-35142.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-30596730-2	chr3	30596630	30596830	+	706.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_029690)	TTS (NM_029690)	3140.0	NM_029690	76652.0	Mm.116928	NM_029690	ENSMUSG00000037737	Actrt3	1700119I24Rik|ARP-T3|Arpm1	actin related protein T3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-12928075-2	chr13	12927975	12928175	+	772.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPEY4_I-int|LTR|ERVK	77255.0	NM_031191	18811.0	Mm.88796	NM_031191	ENSMUSG00000079092	Prl2c2	Ghd2|MRP-1|PLF-1|Plf|Plf1	prolactin family 2, subfamily c, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124552838-4	chr5	124552732	124552932	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026409)	promoter-TSS (NM_026409)	-32.0	NM_001190795	67848.0	Mm.281601	NM_026409	ENSMUSG00000029389	Ddx55	2810021H22Rik|mKIAA1595	DEAD (Asp-Glu-Ala-Asp) box polypeptide 55	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-134606541-2	chr5	134606441	134606641	+	774.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_020044, intron 5 of 12)	intron (NM_020044, intron 5 of 12)	8484.0	NM_022964	56743.0	Mm.391375	NM_020044	ENSMUSG00000040751	Lat2	AW125574|LAB|NTAL|WSCR5|Wbscr15|Wbscr5	linker for activation of T cells family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-95962626-3	chr15	95962520	95962720	+	905.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 17 of 19)	intron (NM_175344, intron 17 of 19)	116933.0	NR_126493	402773.0	Mm.210567	NM_001033483	ENSMUSG00000078925	D030018L15Rik	-	nuclear receptor coactivator 2 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90462877-2	chr2	90462777	90462977	+	575.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 7 of 23)	RSINE1|SINE|B4	16297.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-78087306-4	chr10	78087179	78087379	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17911.0	NM_015790	50723.0	Mm.17819	NM_015790	ENSMUSG00000000732	Icosl	AU044799|B7-H2|B7RP-1|B7h|BG071784|GI50|GL50|GL50-B|ICOS-L|Icoslg|LICOS|Ly115l|mKIAA0653	icos ligand	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-123671395-2	chr14	123671295	123671495	+	602.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145467, intron 2 of 10)	L1Md_F3|LINE|L1	11255.0	NM_145467	223272.0	Mm.383176	NM_145467	ENSMUSG00000032925	Itgbl1	B930011D01Rik	integrin, beta-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-55291993-4	chr15	55291898	55292098	+	966.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15752.0	NM_181277	12818.0	Mm.297859	NM_181277	ENSMUSG00000022371	Col14a1	5730412L22Rik|AW108078	collagen, type XIV, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-15945105-2	chr7	15945005	15945205	+	636.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133831, intron 2 of 12)	B1_Mus1|SINE|Alu	1003.0	NM_133831	68077.0	Mm.277634	NM_133831	ENSMUSG00000041560	Nop53	5330430H08Rik|9430097C02Rik|AU041936|AW536441|Gltscr2|PICT-1|R74911	NOP53 ribosome biogenesis factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165927542-2	chr2	165927451	165927651	+	694.5	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-42713.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	0.790965397061457	1.52205238958231	2.55421299282412	1.2507060106521	1.47657054658456	1.69162519688477	1.09646638059442	0.823885608988001	-1.20461011947355	0.350242640534284	0.850815428289938
Merged-chr1-176835076-4	chr1	176834937	176835137	+	941.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_037996, exon 1 of 1)	non-coding (NR_037996, exon 1 of 1)	1096.0	NR_037996	15365.0	Mm.441435	NR_037996		Hmga2-ps1	EG666235|Gm7996|Hmgic-ps1|[y]i-c	high mobility group AT-hook 2, pseudogene 1	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-84935025-1	chr1	84934925	84935125	+	600.5	f0_balb.idr	promoter-TSS (NM_027921)	promoter-TSS (NM_027921)	58.0	NM_027921	71781.0	Mm.158754	NM_027921	ENSMUSG00000026220	Slc16a14	1110004H10Rik	solute carrier family 16 (monocarboxylic acid transporters), member 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-131821136-3	chr2	131821044	131821244	+	712.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_029381, exon 3 of 3)	non-coding (NR_029381, exon 3 of 3)	26512.0	NR_029381	414081.0	Mm.246905	NR_029381	ENSMUSG00000086822	5330413P13Rik	-	RIKEN cDNA 5330413P13 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-54353454-4	chr3	54353374	54353574	+	947.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7633.0	NM_001198766	50706.0	Mm.236067	NM_015784	ENSMUSG00000027750	Postn	A630052E07Rik|AI747096|OSF-2|Osf2|PLF|PN	periostin, osteoblast specific factor	protein-coding	2.51861543862264	3.14641069985636	1.83731077860547	1.96082464499941	2.61983780390474	2.41094836987961	1.37114580480262	2.4824535443984	-0.363663190821786	0.690835993945932	0.996768576110068
Merged-chr2-101734803-2	chr2	101734721	101734921	+	616.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355625, intron 6 of 8)	intron (NM_001355625, intron 6 of 8)	56401.0	NM_001303273	22034.0	Mm.292729	NM_009424	ENSMUSG00000027164	Traf6	2310003F17Rik|AI851288|C630032O20Rik	TNF receptor-associated factor 6	protein-coding	-0.307705843238883	-0.291456172412396	0.313837526567288	-0.300854402312234	-0.306683531607596	-0.290266577047525	0.531233850799739	-0.300136213729624	0.630079608993928	0.806261836731683	1
Merged-chr3-15073576-3	chr3	15073475	15073675	+	883.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	102374.0	NR_040550	77127.0	Mm.195792	NR_040549	ENSMUSG00000098008	A930001A20Rik	-	RIKEN cDNA A930001A20 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-102784803-3	chr14	102784702	102784902	+	788.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	197830.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-42885469-1	chr17	42885369	42885569	+	586.0	f1_c57bl6.idr	Intergenic	Intergenic	-9045.0	NM_009847	12488.0	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding	2.47078251053845	3.15224996823865	1.47300068937804	2.6124276818632	2.12571025122749	1.53415564485033	1.89304524254023	1.1801250747767	-1.91730295291438	0.0538489485388453	0.339922668135251
Merged-chr10-111390087-4	chr10	111389991	111390191	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-83136.0	NM_001358932	53605.0	Mm.290407	NM_015781	ENSMUSG00000058799	Nap1l1	AA407126|AI256722|D10Ertd68e|NAP-1	nucleosome assembly protein 1-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-95401805-1	chr14	95401705	95401905	+	585.0	f1_balb.idr	Intergenic	Lx3A|LINE|L1	-479449.0	NM_001358241	66732.0	Mm.75060	NM_025733	ENSMUSG00000034689	4921530L21Rik	-	RIKEN cDNA 4921530L21 gene	protein-coding	-0.000572970864530148	0.0185272229358325	0.896931628153062	0.456527911259869	0.405937322887927	0.0199271149345219	0.0136758302549515	0.00831976443138341	-1.98041996300673	0.372148569211837	1
Merged-chr12-113128900-3	chr12	113128798	113128998	+	706.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346696, intron 10 of 19)	intron (NM_001346696, intron 10 of 19)	-11338.0	NM_024223	68337.0	Mm.133825	NM_024223	ENSMUSG00000006356	Crip2	0610010I23Rik|AW743261|C77570|CRP2|CRP4|Crp|ESP1|Hlp	cysteine rich protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-116815568-2	chr3	116815468	116815668	+	638.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7402.0	NM_001081326	77559.0	Mm.237099	NM_001081326	ENSMUSG00000033400	Agl	1110061O17Rik|9430004C13Rik|9630046L06Rik|AI850929|C77197	amylo-1,6-glucosidase, 4-alpha-glucanotransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-41615622-4	chr15	41615532	41615732	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152565, intron 2 of 17)	L3|LINE|CR1	166529.0	NM_001358977	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-108001129-4	chr5	108001019	108001219	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14042.0	NM_026062	67266.0	Mm.277897	NM_026062	ENSMUSG00000029270	Fam69a	2900024C23Rik|AI315274	family with sequence similarity 69, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-11427480-2	chr2	11427380	11427580	+	803.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28980.0	NR_040615	77543.0	Mm.490670	NR_040615	ENSMUSG00000102674	8030442B05Rik	-	RIKEN cDNA 8030442B05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-142495304-2	chr3	142495204	142495404	+	784.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1630.0	NM_153564	229898.0	Mm.459245	NM_153564	ENSMUSG00000105504	Gbp5	5330409J06Rik|Gbp5a	guanylate binding protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140609759-4	chr5	140609674	140609874	+	954.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008494, intron 1 of 7)	intron (NM_008494, intron 1 of 7)	2433.0	NM_008494	16848.0	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129188183-2	chr4	129188083	129188283	+	764.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361317, intron 1 of 8)	intron (NM_001361317, intron 1 of 8)	1359.0	NM_029036	74648.0	Mm.172064	NM_029036	ENSMUSG00000040928	S100pbp	4930429A08Rik|AI851343|S100pbpr	S100P binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-58512523-6	chr16	58512616	58512816	+	978.361084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357433, intron 1 of 10)	intron (NM_001357433, intron 1 of 10)	10710.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-50841716-1	chr14	50841616	50841816	+	762.0	f1_c57bl6.idr	intron (NM_009351, intron 29 of 54)	intron (NM_009351, intron 29 of 54)	28838.0	NM_009351	21745.0	Mm.318736	NM_009351	ENSMUSG00000006281	Tep1	Tp1	telomerase associated protein 1	protein-coding	-0.474154012624406	-0.461212416576723	0.00417110364042567	0.268904879260605	-0.473344690433279	-0.460258663459748	-0.464512388852989	-0.468145745912485	-3.57470569826093	0.179763488907087	1
Merged-chr18-49639078-2	chr18	49638978	49639178	+	542.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	115789.0	NR_033785	67321.0	Mm.245802	NR_033785	ENSMUSG00000100297	1700044K03Rik	-	RIKEN cDNA 1700044K03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-82800636-4	chr3	82800526	82800726	+	906.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	75857.0	NM_001277170	633285.0	Mm.265114	NM_001146328	ENSMUSG00000033882	Rbm46	EG633285|Gm761	RNA binding motif protein 46	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-108261947-4	chr11	108261864	108262064	+	933.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011101, intron 2 of 16)	L1MB2|LINE|L1	81924.0	NM_011101	18750.0	Mm.222178	NM_011101	ENSMUSG00000050965	Prkca	AI875142|Pkca	protein kinase C, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127059111-2	chr10	127059011	127059211	+	712.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033262, intron 1 of 3)	intron (NM_001033262, intron 1 of 3)	1073.0	NM_001033262	216438.0	Mm.37892	NM_001033262	ENSMUSG00000040502	March9	AI608492|BC019560	membrane-associated ring finger (C3HC4) 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-27260244-2	chr7	27260144	27260344	+	607.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010950, intron 1 of 9)	intron (NM_010950, intron 1 of 9)	1483.0	NM_010950	18223.0	Mm.458153	NM_010950	ENSMUSG00000063160	Numbl	nbl	numb-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-49620105-4	chr4	49620010	49620210	+	949.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11950.0	NM_001163263	109331.0	Mm.24765	NM_182999	ENSMUSG00000028309	Rnf20	4833430L21Rik|AW540162|C79397|mKIAA4116	ring finger protein 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-36150496-2	chr13	36150396	36150596	+	629.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039189, intron 1 of 5)	intron (NM_001039189, intron 1 of 5)	32853.0	NM_001039189	69955.0	Mm.70690	NM_024274	ENSMUSG00000021420	Fars2	Fars1|pheRS	phenylalanine-tRNA synthetase 2 (mitochondrial)	protein-coding	-0.219711355542923	-0.756277302245537	-0.75931612068893	-0.761653780761687	-0.391964611888452	-0.755590941894944	-0.758646744977994	-0.761245834329488	-0.676295854267163	0.822509139760631	1
Merged-chr4-138107892-2	chr4	138107786	138107986	+	911.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355700, intron 7 of 30)	intron (NM_001355700, intron 7 of 30)	30632.0	NR_126429	73563.0	Mm.444294	NR_126429	ENSMUSG00000084804	1700095J12Rik	-	RIKEN cDNA 1700095J12 gene	ncRNA	1.41106415777645	0.979876285051523	2.25040091288365	1.16024674521011	1.84471287332812	0.984120933679519	1.68589950740361	1.74748421404493	0.122866599373809	0.921395045088546	0.998431161219273
Merged-chr10-24628874-2	chr10	24628774	24628974	+	565.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MD|LINE|L1	33432.0	NM_010217	14219.0	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97204897-2	chr6	97204797	97204997	+	545.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111106, intron 1 of 16)	intron (NM_001111106, intron 1 of 16)	750.0	NM_001301857	22200.0	Mm.277626	NM_011666	ENSMUSG00000030061	Uba3	A830034N06Rik|AI256736|AI848246|AW546539|Ube1c	ubiquitin-like modifier activating enzyme 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-70437655-4	chr18	70437567	70437767	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34787.0	NM_029019	170461.0	Mm.83623	NM_029019	ENSMUSG00000079608	Stard6	1700011K09Rik|4833424I06Rik|4933429L05Rik|AI644424	StAR-related lipid transfer (START) domain containing 6	protein-coding	4.02862914274087	3.91860086098122	3.33100784926273	4.12743920814577	4.06001379081499	3.58694797055695	4.26919071091606	4.51596956864412	0.366047118063662	0.430006643167681	0.904095509792853
Merged-chr5-99232260-2	chr5	99232160	99232360	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_181318, intron 7 of 13)	intron (NM_181318, intron 7 of 13)	20667.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-139841498-2	chr2	139841398	139841598	+	573.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159640, intron 13 of 13)	intron (NM_001159640, intron 13 of 13)	163320.0	NM_001276489	319909.0	Mm.41113	NM_001126490	ENSMUSG00000074766	Ism1	5430433G21Rik|Ism	isthmin 1, angiogenesis inhibitor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-18643476-2	chr19	18643365	18643565	+	717.0	f0_balb.idr|f1_balb.idr	intron (NM_145497, intron 7 of 8)	intron (NM_145497, intron 7 of 8)	11449.0	NM_145497	225994.0	Mm.211595	NM_145497	ENSMUSG00000037847	Nmrk1	AA408380|D630020N23Rik|Nrk1	nicotinamide riboside kinase 1	protein-coding	1.27706025572183	0.831938924547652	0.813801508941129	1.35488031270843	1.71692697335294	1.46856869256235	0.817847695065661	2.26645242377647	2.02254963130607	0.137136213916783	0.577469500630244
Merged-chr6-127472254-4	chr6	127472147	127472347	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181402, intron 4 of 8)	intron (NM_181402, intron 4 of 8)	18620.0	NM_001346512	101187.0	Mm.110818	NM_181402	ENSMUSG00000037997	Parp11	5330431N24Rik|AI851877|ARTD11|HIN1L|PARP-11	poly (ADP-ribose) polymerase family, member 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-58398363-3	chr7	58398278	58398478	+	689.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-259824.0	NM_009728	11982.0	Mm.135129	NM_009728	ENSMUSG00000025324	Atp10a	Atp10c|pfatp	ATPase, class V, type 10A	protein-coding	-0.256267483353422	-0.242673662565691	0.202662671863387	-0.250569444494734	0.0133747556536456	0.375021895450604	-0.246149812619697	-0.249969310122843	1.0507149258511	0.665332924925838	1
Merged-chr10-68473546-2	chr10	68473446	68473646	+	631.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_028491, intron 5 of 7)	(CA)n|Simple_repeat|Simple_repeat	68329.0	NM_028491	73287.0	Mm.141830	NM_028491	ENSMUSG00000019945	Cabcoco1	1700040L02Rik	ciliary associated calcium binding coiled-coil 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-142901565-4	chr2	142901473	142901673	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081133)	promoter-TSS (NM_001081133)	-109.0	NM_001355123	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-132847213-2	chr2	132847113	132847313	+	849.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025646)	promoter-TSS (NM_025646)	-521.0	NM_025646	66586.0	Mm.357342	NM_025646	ENSMUSG00000027357	Crls1	0610009I22Rik|4930557M15Rik|5730490M08Rik	cardiolipin synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-137338417-4	chr5	137338314	137338514	+	802.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1554.0	NM_001359611	83704.0	Mm.235625	NM_031406	ENSMUSG00000037344	Slc12a9	CIP1	solute carrier family 12 (potassium/chloride transporters), member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-68319109-3	chr15	68319009	68319209	+	723.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18401.0	NR_029534	387226.0		NR_029534	ENSMUSG00000065476	Mir30b	Mirn30b|mir-30b|mmu-mir-30b	microRNA 30b	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-123815648-4	chr9	123815543	123815743	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110253, intron 14 of 17)	intron (NM_001110253, intron 14 of 17)	9166.0	NM_030712	80901.0	Mm.124289	NM_030712	ENSMUSG00000048521	Cxcr6	BB217514|BONZO|STRL33	chemokine (C-X-C motif) receptor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32537768-4	chr2	32537660	32537860	+	927.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153560, intron 1 of 10)	MIRb|SINE|MIR	2401.0	NM_153560	98952.0	Mm.4065	NM_153560	ENSMUSG00000039157	Fam102a	AI426465|C230093N12Rik|Eeig1	family with sequence similarity 102, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26252957-4	chr17	26252843	26253043	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025881)	promoter-TSS (NM_025881)	33.0	NR_037905	66978.0	Mm.440216	NM_025881	ENSMUSG00000024188	Luc7l	1810045C04Rik|2410018D03Rik	Luc7-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-14833949-2	chr9	14833849	14834049	+	755.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001310728, exon 19 of 19)	3' UTR (NM_001310728, exon 19 of 19)	-26261.0	NM_001310734	14608.0	Mm.4672	NM_010287	ENSMUSG00000031932	Gpr83	AW045253|Gir|Gpr72|RP105|RP39|RP82	G protein-coupled receptor 83	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-64436807-1	chr13	64436707	64436907	+	540.0	f1_c57bl6.idr	exon (NM_053180, exon 5 of 8)	exon (NM_053180, exon 5 of 8)	4254.0	NM_053180	105278.0	Mm.74982	NM_053180	ENSMUSG00000021483	Cdk20	4932702G04Rik|AU019450|AW558027|CDCH|Ccrk|PNQLARE|p42	cyclin-dependent kinase 20	protein-coding	1.1368114908985	1.08351968913605	0.519428507949868	0.511117616401341	0.499215783495534	1.22889116400808	1.38670173981085	0.512575976474909	0.575699825892374	0.737963568304162	0.998431161219273
Merged-chr5-134099692-4	chr5	134099606	134099806	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030719)	promoter-TSS (NM_030719)	-42.0	NM_030719	80909.0	Mm.45218	NM_030719	ENSMUSG00000015944	Gatsl2	7530428J21Rik|AW742413|Castor2|Gats|Gatsl1	GATS protein-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-44533503-3	chr10	44533413	44533613	+	720.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74765.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132011660-4	chr4	132011538	132011738	+	886.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183428, intron 1 of 20)	intron (NM_183428, intron 1 of 20)	37440.0	NM_001128606	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28402394-2	chr7	28402294	28402494	+	751.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175021, intron 11 of 12)	intron (NM_175021, intron 11 of 12)	9398.0	NM_019458	54624.0	Mm.7916	NM_019458	ENSMUSG00000003437	Paf1	5730511K23Rik|AA675045	Paf1, RNA polymerase II complex component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-79945874-2	chr8	79945774	79945974	+	696.3000490000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	112134.0	NM_020259	15245.0	Mm.254493	NM_020259	ENSMUSG00000064325	Hhip	Hhip1	Hedgehog-interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53126418-2	chr4	53126318	53126518	+	656.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 5 of 49)	intron (NM_013454, intron 5 of 49)	33477.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-81860261-4	chr7	81860147	81860347	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_111910, intron 1 of 7)	intron (NR_111910, intron 1 of 7)	1246.0	NM_145375	107769.0	Mm.221412	NM_145375	ENSMUSG00000038623	Tm6sf1	AI428514|BC023123|C630016D09Rik	transmembrane 6 superfamily member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-120128233-4	chr7	120128107	120128307	+	756.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17084.0	NM_011775	22787.0	Mm.6510	NM_011775	ENSMUSG00000030911	Zp2	Zp-2	zona pellucida glycoprotein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-151625457-4	chr1	151625359	151625559	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022018, intron 1 of 13)	L1MD|LINE|L1	54086.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-19872150-4	chr4	19872000	19872200	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50466.0	NM_175406	242341.0	Mm.19298	NM_175406	ENSMUSG00000028238	Atp6v0d2	1620401A02Rik|AI324824|V-ATPase	ATPase, H+ transporting, lysosomal V0 subunit D2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-93081204-4	chr1	93081060	93081260	+	958.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001294150, intron 1 of 46)	intron (NM_001294150, intron 1 of 46)	1320.0	NM_001294150	16560.0	Mm.276408	NM_008440	ENSMUSG00000014602	Kif1a	ATSV|C630002N23Rik|Gm1626|Kns1	kinesin family member 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135822537-2	chr4	135822437	135822637	+	851.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33534.0	NM_001284196	14105.0	Mm.10229	NM_010178	ENSMUSG00000028676	Srsf10	FUSIP2|Fusip1|NSSR1|NSSR2|Nssr|SRrp40|Sfrs13a|Srsf13a|TASR|TASR1|TASR2	serine/arginine-rich splicing factor 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80432975-2	chr10	80432875	80433075	+	885.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164153, intron 1 of 18)	intron (NM_001164153, intron 1 of 18)	678.0	NM_001164150	21423.0	Mm.3406	NM_011548	ENSMUSG00000020167	Tcf3	A1|AA408400|ALF2|AW209082|E12|E12/E47|E2A|E47|KA1|ME2|Pan1|Pan2|TCF-3|Tcfe2a|VDIR|bHLHb21	transcription factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-31055220-2	chr7	31055120	31055320	+	559.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_052991)	promoter-TSS (NM_052991)	-367.0	NM_194321	56188.0	Mm.1491	NM_019503	ENSMUSG00000036570	Fxyd1	0610012C17Rik|1110006M24Rik|Plm|Pml	FXYD domain-containing ion transport regulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-21995670-3	chr3	21995527	21995727	+	843.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-81025.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-13865505-2	chr6	13865405	13865605	+	743.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	6013.0	NM_001352887	66520.0	Mm.29615	NM_183258		2610001J05Rik	C79299	RIKEN cDNA 2610001J05 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-119878702-2	chr7	119878603	119878803	+	887.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163703, intron 1 of 2)	(A)n|Simple_repeat|Simple_repeat	16755.0	NM_173408	233805.0	Mm.31539	NM_173408	ENSMUSG00000048787	Dcun1d3	1700020A13Rik|BC030335	DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-85114324-2	chr1	85114224	85114424	+	976.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4471.0	NM_213615	381287.0	Mm.487565	NM_213615	ENSMUSG00000089844	A530032D15Rik	Gm1888	RIKEN cDNA A530032D15Rik gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-29485475-4	chr19	29485389	29485589	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36498.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33829565-4	chr16	33829430	33829630	+	938.908325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010580)	promoter-TSS (NM_010580)	-135.0	NM_010580	16419.0	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78450303-4	chr15	78450193	78450393	+	980.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355601, intron 10 of 17)	intron (NM_001355601, intron 10 of 17)	18341.0	NM_001355601	71753.0	Mm.34056	NM_027902	ENSMUSG00000016942	Tmprss6	1300008A22Rik	transmembrane serine protease 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-59669025-4	chr13	59668925	59669125	+	985.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001035122, intron 1 of 9)	intron (NM_001035122, intron 1 of 9)	6759.0	NM_001035122	105348.0	Mm.171335	NM_027307	ENSMUSG00000021556	Golm1	2310001L02Rik|AW125446|D030064E01Rik|GP73|Golph2|PSEC0257	golgi membrane protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75772024-2	chr11	75771924	75772124	+	788.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_007873, exon 9 of 9)	exon (NM_007873, exon 9 of 9)	-23785.0	NR_136933	102641247.0	Mm.411386	NR_136932		Gm12339	-	predicted gene 12339	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115066019-2	chr11	115065919	115066119	+	986.375	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3980.0	NM_172050	217306.0	Mm.222667	NM_172050	ENSMUSG00000048498	Cd300e	BC034097|CLM2|Cd300le|TREM5	CD300E molecule	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-4366170-3	chr12	4366079	4366279	+	892.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010881, intron 2 of 22)	ORR1E|LTR|ERVL-MaLR	111003.0	NM_010881	17977.0	Mm.301039	NM_010881	ENSMUSG00000020647	Ncoa1	KAT13A|NCoA-1|NRC-1|SRC-1|SRC-a|SRC1|bHLHe74|mNRC-1	nuclear receptor coactivator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-35298127-4	chr2	35298017	35298217	+	934.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001206368, intron 9 of 16)	intron (NM_001206368, intron 9 of 16)	15737.0	NM_146120	227753.0	Mm.443	NM_146120	ENSMUSG00000026879	Gsn	ADF	gelsolin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-27679858-1	chr15	27679758	27679958	+	545.0	f1_balb.idr	intron (NM_198301, intron 1 of 6)	intron (NM_198301, intron 1 of 6)	1684.0	NM_001242424	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-110448594-4	chr5	110448488	110448688	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001142642)	promoter-TSS (NM_001142642)	-85.0	NM_001142642	381668.0	Mm.348782	NM_028596	ENSMUSG00000043323	Fbrsl1	2410025L10Rik|AI467568|Gm1049|Gm29766|mKIAA1545	fibrosin-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-79584646-2	chr17	79584546	79584746	+	826.8000490000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30254.0	NM_201361	381110.0	Mm.209801	NM_201361	ENSMUSG00000036368	Rmdn2	AW061290|Fam82a1|RMD-2|mRMD-2	regulator of microtubule dynamics 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-60778654-2	chr10	60778554	60778754	+	630.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_029770, intron 5 of 16)	intron (NM_029770, intron 5 of 16)	-25872.0	NM_023596	71279.0	Mm.284462	NM_023596	ENSMUSG00000020100	Slc29a3	4933435C21Rik|AW987637|Ent3	solute carrier family 29 (nucleoside transporters), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-121934648-3	chr8	121934568	121934768	+	822.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007608, intron 2 of 6)	intron (NM_007608, intron 2 of 6)	10244.0	NM_007608	12352.0	Mm.116761	NM_007608	ENSMUSG00000025317	Car5a	CAV|Ca5a|Car5	carbonic anhydrase 5a, mitochondrial	protein-coding	2.18947067734131	3.14618179056934	2.6097928194449	1.39400110047481	2.83115621453625	2.33468673385173	2.25660799793064	2.54881378907352	0.0484083218650177	0.955609435459991	0.998431161219273
Merged-chr8-115420308-4	chr8	115420208	115420408	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	286586.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-31070123-2	chr16	31070043	31070243	+	851.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_198626, intron 1 of 3)	intron (NM_198626, intron 1 of 3)	11289.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	-2.18308165884198	-2.15547475440471	-2.16382331017202	-2.1706810624505	-2.18114370519566	-2.15366558754311	-2.03057248461154	-2.16945352807143	0.759018020146679	0.829933115115583	1
Merged-chr9-20975837-4	chr9	20975727	20975927	+	829.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010333, intron 1 of 1)	intron (NM_010333, intron 1 of 1)	966.0	NM_010333	14739.0	Mm.46493	NM_010333	ENSMUSG00000043895	S1pr2	1100001A16Rik|Edg5|Gpcr13|H218|LPb2|S1P2	sphingosine-1-phosphate receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-90289667-2	chr16	90289567	90289767	+	616.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5164.0	NM_178923	224432.0	Mm.439811	NM_178923	ENSMUSG00000022983	Scaf4	AA517739|Sfrs15|Sra4|Srsf15	SR-related CTD-associated factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-40088548-2	chr1	40088448	40088648	+	578.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360800, intron 1 of 8)	intron (NM_001360800, intron 1 of 8)	2455.0	NM_001360800	16178.0	Mm.1349	NM_010555	ENSMUSG00000026073	Il1r2	CD121b|Il1r-2	interleukin 1 receptor, type II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-75187818-2	chr10	75187718	75187918	+	898.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24255.0	NM_153406	74392.0	Mm.27716	NM_153406	ENSMUSG00000033444	Specc1l	4930470P14Rik|4932439K10Rik|9530057A13Rik|AI317249|Cytsa|mKIAA0376	sperm antigen with calponin homology and coiled-coil domains 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-11875411-4	chr16	11875311	11875511	+	944.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146067, intron 2 of 3)	intron (NM_146067, intron 2 of 3)	-25953.0	NR_033509	791359.0	Mm.227592	NR_033509	ENSMUSG00000055015	Gm9961	-	predicted gene 9961	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-122946120-2	chr6	122946020	122946220	+	799.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER20C_Mm|LTR|ERVK	-6395.0	NM_001204241	73149.0	Mm.25684	NM_153197	ENSMUSG00000043832	Clec4a3	3110037K17Rik|Dcir3	C-type lectin domain family 4, member a3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-80267000-1	chr13	80266900	80267100	+	549.0	f1_c57bl6.idr	Intergenic	Intergenic	-616384.0	NR_153410	105171.0	Mm.423137	NM_001042591	ENSMUSG00000074794	Arrdc3	AI450344|mKIAA1376	arrestin domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-28975441-2	chr10	28975341	28975541	+	805.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026336, intron 4 of 5)	intron (NM_026336, intron 4 of 5)	10865.0	NM_026336	67719.0	Mm.440480	NM_026336	ENSMUSG00000015519	2310057J18Rik	2210414P04Rik|Leg1	RIKEN cDNA 2310057J18 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-59569295-2	chr11	59569195	59569395	+	757.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	2443.0	NM_001011789	257962.0	Mm.377316	NM_001011789	ENSMUSG00000059610	Olfr222	MOR256-45P	olfactory receptor 222	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-109420225-4	chr11	109420120	109420320	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5726.0	NM_025275	13929.0	Mm.211850	NM_025275	ENSMUSG00000020610	Amz2	AA408420|ESTM12|X83328	archaelysin family metallopeptidase 2	protein-coding	4.90697993405328	4.87623557791497	5.28576960384849	4.36991694148774	4.69008547165672	3.34502934553931	4.99972536074294	4.10332670396233	-0.579311117295997	0.172412885756417	0.640342426440101
Merged-chr15-13171303-4	chr15	13171200	13171400	+	810.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007666, intron 1 of 11)	intron (NM_007666, intron 1 of 11)	2375.0	NM_007666	12563.0	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	1.78008479153894	2.64665806634078	1.7532012201882	1.50050449079056	1.93644621330517	3.07745585828184	1.94820693674128	2.49284784067733	1.03509250083981	0.26400427142892	0.766188681961536
Merged-chr4-114917290-4	chr4	114917208	114917408	+	782.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030721, intron 3 of 3)	intron (NR_030721, intron 3 of 3)	8019.0	NR_030721	100040736.0	Mm.231287	NR_030721	ENSMUSG00000085399	Foxd2os	9130206I24Rik	forkhead box D2, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21149957-4	chr9	21149852	21150052	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016742)	promoter-TSS (NM_016742)	-46.0	NM_016742	12539.0	Mm.32331	NM_016742	ENSMUSG00000019471	Cdc37	p50|p50Cdc37	cell division cycle 37	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80397380-2	chr10	80397280	80397480	+	717.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001306143, intron 1 of 6)	ID_B1|SINE|B4	2151.0	NM_013595	17192.0	Mm.7142	NM_013595	ENSMUSG00000035478	Mbd3	AI181826|AU019209	methyl-CpG binding domain protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-95808861-2	chr8	95808761	95808961	+	637.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_015574, exon 1 of 4)	non-coding (NR_015574, exon 1 of 4)	-1399.0	NM_001205226	234594.0	Mm.259220	NM_153164	ENSMUSG00000036550	Cnot1	6030411K04Rik|AA815922|D830048B13	CCR4-NOT transcription complex, subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70832534-2	chr8	70832445	70832645	+	890.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7175.0	NM_027560	70807.0	Mm.24215	NM_027560	ENSMUSG00000002910	Arrdc2	4632416I05Rik|Ilad1	arrestin domain containing 2	protein-coding	2.6224411652655	1.09748957014177	1.06085601007545	1.03112508652791	2.98627235378628	2.99362557590903	1.36038470640412	2.03629192538888	1.79033867465309	0.125058754916642	0.553673410143865
Merged-chr7-110270534-2	chr7	110270434	110270634	+	611.299988	f1_balb.idr|f1_c57bl6.idr	intron (NM_009302, intron 7 of 11)	intron (NM_009302, intron 7 of 11)	48831.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67004937-4	chr10	67004839	67005039	+	836.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_110511)	promoter-TSS (NR_110511)	-136.0	NR_110511	102634101.0	Mm.445258	NR_110511	ENSMUSG00000112925	Gm31763	-	predicted gene, 31763	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-12170438-3	chr17	12170342	12170542	+	973.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026644, intron 2 of 8)	intron (NM_026644, intron 2 of 8)	51158.0	NM_026644	68262.0	Mm.258300	NM_026644	ENSMUSG00000023827	Agpat4	1500003P24Rik	1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)	protein-coding	2.07273117727892	1.83475388043519	2.34546807718529	2.43592779651284	1.50966757474788	1.21458395183143	1.62288496770993	1.87145130362785	-1.79121815816237	0.0780012018306926	0.425003823598842
Merged-chr1-124077742-3	chr1	124077640	124077840	+	838.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32181.0	NM_199021	269109.0	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	1.6076771793444	1.84353639381576	0.822188456863587	2.11824594238038	1.29062808700809	0.8437289554481	0.826119554336322	1.21015837968478	-2.27514934986301	0.0969722204108412	0.483839492856643
Merged-chr1-180957814-2	chr1	180957714	180957914	+	783.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144794, intron 8 of 22)	intron (NM_144794, intron 8 of 22)	15296.0	NM_144794	208795.0	Mm.185518	NM_144794	ENSMUSG00000026519	Tmem63a	BC014795|Tmem64a	transmembrane protein 63a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-9131722-4	chr15	9131636	9131836	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013787, intron 2 of 9)	intron (NM_013787, intron 2 of 9)	8718.0	NM_013787	27401.0	Mm.35584	NM_013787	ENSMUSG00000054115	Skp2	4930500A04Rik|FBXL1|FWD1|p45	S-phase kinase-associated protein 2 (p45)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-53770388-4	chr11	53770276	53770476	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159396)	promoter-TSS (NM_001159396)	-97.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43524353-4	chr4	43524260	43524460	+	852.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009416)	promoter-TSS (NM_009416)	-806.0	NM_001277875	22004.0	Mm.646	NM_009416	ENSMUSG00000028464	Tpm2	Tpm-2|Trop-2	tropomyosin 2, beta	protein-coding	1.81317628499475	1.49509227943512	0.618070544124887	0.607104146683875	1.39485812130472	0.635099580997108	1.03149802026722	0.6090343098566	-1.10328439778097	0.494611385352943	0.935679785535167
Merged-chr6-99665624-4	chr6	99665561	99665761	+	980.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025829, intron 1 of 6)	intron (NM_025829, intron 1 of 6)	1110.0	NM_025829	66892.0	Mm.32889	NM_025829	ENSMUSG00000093661	Eif4e3	1300018P11Rik|AI451927|eIF4E-3	eukaryotic translation initiation factor 4E member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114928657-2	chr11	114928557	114928757	+	827.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_199221, intron 1 of 3)	intron (NM_199221, intron 1 of 3)	5729.0	NM_001347651	217304.0	Mm.185355	NM_199221	ENSMUSG00000063193	Cd300lb	CLM-7|Clm7|Gm253|LMIR5	CD300 molecule like family member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-62521034-2	chr4	62520934	62521134	+	795.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008525)	promoter-TSS (NM_008525)	-971.0	NM_008525	17025.0	Mm.6988	NM_008525	ENSMUSG00000028393	Alad	ALADH|Lv	aminolevulinate, delta-, dehydratase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-27229119-2	chr3	27229019	27229219	+	818.1999509999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 3 of 4)	intron (NM_178772, intron 3 of 4)	46115.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67984785-3	chr10	67984675	67984875	+	673.611145	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	intron (NM_001359319, intron 1 of 11)	intron (NM_001359319, intron 1 of 11)	5205.0	NM_001359319	170799.0	Mm.209844	NM_133244	ENSMUSG00000037846	Rtkn2	B130039D23Rik|Mbf|Plekhk1	rhotekin 2	protein-coding	3.60509045537861	2.91078151852028	2.94274069833509	4.46075724226787	3.44477747639854	3.07483733040167	3.86170925447002	3.38589725193236	-0.274377112608432	0.645909889928304	0.984116759910594
Merged-chr2-167004642-2	chr2	167004541	167004741	+	680.666626	f0_balb.idr|f0_c57.idr	Intergenic	B3|SINE|B2	-8342.0	NM_001109905	20853.0	Mm.73276	NM_011490	ENSMUSG00000039536	Stau1	5830401L18Rik|AW549911|C85792|Stau	staufen double-stranded RNA binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-75473425-4	chr18	75473337	75473537	+	878.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201354, intron 9 of 11)	L1MB2|LINE|L1	-41208.0	NR_045879	100038353.0	Mm.440724	NR_045879	ENSMUSG00000097712	Gm10532	-	predicted gene 10532	ncRNA	2.40406245329265	3.3983943285991	2.93479136891254	4.60715704754897	3.44532926523668	3.52341763347404	3.30689066614551	4.08672425757253	0.0107690121940332	0.986523264332591	0.998431161219273
Merged-chr2-164793075-2	chr2	164792975	164793175	+	778.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_133924)	TTS (NM_133924)	7054.0	NM_133924	101113.0	Mm.295647	NM_133924	ENSMUSG00000050373	Snx21	5730407K14Rik|AI481716	sorting nexin family member 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-84454230-3	chr2	84454130	84454330	+	762.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355271, intron 3 of 8)	intron (NM_001355271, intron 3 of 8)	19944.0	NM_011576	21788.0	Mm.124316	NM_011576	ENSMUSG00000027082	Tfpi	A630013F22Rik|AW552122|EPI|LACI	tissue factor pathway inhibitor	protein-coding	3.20601911389363	3.83362614629102	3.29523532983796	3.53755087348515	2.60750131701636	4.1188761327945	3.66507450200883	3.6947255272321	0.202374616328622	0.721771394638111	0.998431161219273
Merged-chr1-171561937-3	chr1	171561823	171562023	+	758.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018729, intron 1 of 8)	intron (NM_018729, intron 1 of 8)	2730.0	NM_018729	18106.0	Mm.2299	NM_018729	ENSMUSG00000004709	Cd244	2B4|C9.1|F730046O15Rik|Ly90|NAIL|NKR2B4|Nmrk|SLAMF4	CD244 natural killer cell receptor 2B4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25627289-6	chr7	25627079	25627279	+	858.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146184)	promoter-TSS (NM_146184)	-445.0	NM_001036740	232984.0	Mm.192369	NM_146184	ENSMUSG00000059479	B3gnt8	B3galt7|B7galt7|BC025206	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-103359859-4	chr11	103359759	103359959	+	909.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_183288, exon 3 of 3)	3' UTR (NM_183288, exon 3 of 3)	3833.0	NM_183288	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99469769-4	chr7	99469660	99469860	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028145, intron 2 of 6)	intron (NM_028145, intron 2 of 6)	3756.0	NM_028145	72184.0	Mm.153585	NM_028145	ENSMUSG00000035298	Klhl35	2810406K13Rik	kelch-like 35	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-103989082-3	chr11	103988981	103989181	+	551.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22210.0	NM_007477	11841.0	Mm.5061	NM_007477	ENSMUSG00000062421	Arf2	-	ADP-ribosylation factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-177260565-4	chr1	177260457	177260657	+	951.2666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11790.0	NM_011785	23797.0	Mm.235194	NM_011785	ENSMUSG00000019699	Akt3	AI851531|D930002M15Rik|Nmf350	thymoma viral proto-oncogene 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-114658252-3	chr5	114657963	114658163	+	771.211121	f1_balb.idr|f1_c57bl6.idr	intron (NM_022017, intron 1 of 15)	CpG	358.0	NM_022017	63873.0	Mm.266450	NM_022017	ENSMUSG00000014158	Trpv4	0610033B08Rik|OTRPC4|Trp12|VR-OAC|VRL-2|VROAC	transient receptor potential cation channel, subfamily V, member 4	protein-coding	3.43346087141227	4.44406065377735	1.94822244911553	3.54985849036387	3.90136863030164	3.80545718224982	1.96683118043901	3.41626659972102	-0.221893859658799	0.757888925451685	0.998431161219273
Merged-chr4-137468620-4	chr4	137468506	137468706	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008305)	promoter-TSS (NM_008305)	-197.0	NM_008305	15530.0	Mm.273662	NM_008305	ENSMUSG00000028763	Hspg2	AI852380|Pcn|Plc|per	perlecan (heparan sulfate proteoglycan 2)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81319215-6	chr10	81319028	81319228	+	896.525024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008844, exon 18 of 18)	3' UTR (NM_008844, exon 18 of 18)	-1975.0	NM_027381	70312.0	Mm.87628	NM_027381	ENSMUSG00000034889	Cactin	2510012J08Rik	cactin, spliceosome C complex subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-45274765-2	chr16	45274659	45274859	+	677.833374	f0_c57.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	50422.0	NM_177584	208154.0	Mm.38199	NM_177584	ENSMUSG00000052013	Btla	A630002H24	B and T lymphocyte associated	protein-coding	1.47482424952202	0.304133039257608	0.691637625052227	1.23468351373188	0.273131340129941	0.306505107576217	0.295856002582986	0.286612267882136	-4.62671001437989	0.0134961040979851	0.134938547473021
Merged-chr5-27794099-2	chr5	27793986	27794186	+	885.833374	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2536.0	NM_018878	55982.0	Mm.277190	NM_018878	ENSMUSG00000002221	Paxip1	D5Ertd149e|PTIP	PAX interacting (with transcription-activation domain) protein 1	protein-coding	4.12309533069219	4.2837187437486	3.89929070442195	3.15603781744869	2.91562242688685	1.96149237765204	1.58280997809643	2.97170085138278	-2.276199423627	0.00077076740720411	0.0157095141873753
Merged-chr5-120513530-1	chr5	120513430	120513630	+	840.0	f0_balb.idr	intron (NM_001177595, intron 2 of 13)	L2a|LINE|L2	2338.0	NM_001177594	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89387818-3	chr3	89387721	89387921	+	779.583313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355206)	promoter-TSS (NM_001355206)	-150.0	NM_001355206	22724.0	Mm.262184	NM_009565	ENSMUSG00000028042	Zbtb7b	Thpok|Zfp67|c-Krox	zinc finger and BTB domain containing 7B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4962128-5	chr19	4962100	4962300	+	943.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025553)	promoter-TSS (NM_025553)	-106.0	NM_025553	66419.0	Mm.28494	NM_025553	ENSMUSG00000024902	Mrpl11	2410001P07Rik|L11mt	mitochondrial ribosomal protein L11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30913219-2	chr7	30913119	30913319	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346086, intron 1 of 12)	intron (NM_001346086, intron 1 of 12)	1102.0	NM_001346089	17136.0	Mm.241355	NM_010758	ENSMUSG00000036634	Mag	Gma|siglec-4a	myelin-associated glycoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91054910-2	chr2	91054810	91055010	+	678.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_008948, intron 2 of 11)	intron (NM_008948, intron 2 of 11)	894.0	NM_008948	19182.0	Mm.289832	NM_008948	ENSMUSG00000002102	Psmc3	TBP-1	proteasome (prosome, macropain) 26S subunit, ATPase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-57675282-4	chr18	57675170	57675370	+	937.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029290, intron 6 of 6)	intron (NM_029290, intron 6 of 6)	-36685.0	NR_045360	70157.0	Mm.490532	NR_045360		2210409D07Rik	-	RIKEN cDNA 2210409D07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-107683829-4	chr7	107683715	107683915	+	997.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357437, intron 2 of 23)	intron (NM_001357437, intron 2 of 23)	-8028.0	NM_001357438	19024.0	Mm.2817	NM_008905	ENSMUSG00000036528	Ppfibp2	Cclp1	PTPRF interacting protein, binding protein 2 (liprin beta 2)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-25102706-1	chr12	25102606	25102806	+	558.0	f1_balb.idr	Intergenic	Lx9|LINE|L1	-6614.0	NM_010496	15902.0	Mm.34871	NM_010496	ENSMUSG00000020644	Id2	AI255428|C78922|Idb2|bHLHb26	inhibitor of DNA binding 2	protein-coding	0.948656385480368	2.02596677880937	2.17694725818341	0.987163589198445	1.53225011448033	2.28159136757025	1.01537205120047	2.59945424136731	0.852624117463229	0.493259554461598	0.935679785535167
Merged-chr8-105355349-2	chr8	105355249	105355449	+	744.599976	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081332, intron 3 of 15)	intron (NM_001081332, intron 3 of 15)	7091.0	NM_001081332	277973.0	Mm.334766	NM_001081332	ENSMUSG00000014786	Slc9a5	Gm696	solute carrier family 9 (sodium/hydrogen exchanger), member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-152763554-6	chr3	152763415	152763615	+	939.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025662, intron 9 of 10)	Lx8|LINE|L1	49415.0	NM_025662	329777.0	Mm.331447	NM_025662	ENSMUSG00000039047	Pigk	3000001O05Rik|Gm38470|PIG-K	phosphatidylinositol glycan anchor biosynthesis, class K	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-83502390-3	chr12	83502269	83502469	+	760.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14633.0	NM_058212	70127.0	Mm.151308	NM_058212	ENSMUSG00000021221	Dpf3	2810403B03Rik|6530402L11Rik|BAF45C|C78788|CERD4|cer-d4	D4, zinc and double PHD fingers, family 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-16330418-4	chr19	16330295	16330495	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008139, intron 3 of 6)	intron (NM_008139, intron 3 of 6)	-15391.0	NR_105832	102465218.0		NR_105832	ENSMUSG00000098718	Mir496b	Gm28028|mmu-mir-496b	microRNA 496b	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-45544791-2	chr19	45544691	45544891	+	864.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15773.0	NM_001330506	56626.0	Mm.46509	NM_020032	ENSMUSG00000025218	Poll	1110003P06Rik|AV007317	polymerase (DNA directed), lambda	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-39067395-3	chr6	39067307	39067507	+	830.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040523, intron 1 of 3)	intron (NR_040523, intron 1 of 3)	179.0	NR_040523	69986.0	Mm.490941	NR_040523	ENSMUSG00000100121	1700025N23Rik	-	RIKEN cDNA 1700025N23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-119815280-2	chr3	119815180	119815380	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(A)n|Simple_repeat|Simple_repeat	-31892.0	NM_019550	56195.0	Mm.29966	NM_019550	ENSMUSG00000028134	Ptbp2	Ptb2|brPTB|nPTB	polypyrimidine tract binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124539434-2	chr5	124539334	124539534	+	663.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1357.0	NM_019770	56334.0	Mm.325307	NM_019770	ENSMUSG00000029390	Tmed2	1110032D12Rik|1810020N21Rik|Rnp24|Sid394|p24beta1	transmembrane p24 trafficking protein 2	protein-coding	0.7295887195999	1.50941799133658	0.412615792268869	0.402944039669049	0.738329357109381	1.52595888176753	0.415350126778269	0.404645916474562	0.039871251251857	0.981590009985309	0.998431161219273
Merged-chr2-166041897-4	chr2	166041808	166042008	+	980.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008679, intron 2 of 22)	intron (NM_008679, intron 2 of 22)	49271.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	0.540331746134308	0.94276763931489	1.35971041689047	0.552302168874977	1.14935709178831	0.570765719902872	0.913665902702792	1.01076253443193	0.115524440010224	0.94310124558266	1
Merged-chr1-138303409-2	chr1	138303309	138303509	+	793.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29671.0	NM_177397	338375.0	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-40682666-3	chr19	40682502	40682702	+	751.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009848, intron 1 of 9)	intron (NM_009848, intron 1 of 9)	22832.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-38372659-4	chr18	38372578	38372778	+	966.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-33685.0	NM_011937	26384.0	Mm.22374	NM_011937	ENSMUSG00000052102	Gnpda1	GNPDA|Gnp1|Gnpi|oscillin	glucosamine-6-phosphate deaminase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-139175430-4	chr4	139175311	139175511	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_033543)	TTS (NR_033543)	5244.0	NR_033543	100038595.0	Mm.385206	NR_033543	ENSMUSG00000073739	Gm16287	-	predicted gene 16287	ncRNA	6.355654795222	5.33688433791136	5.96277178602769	6.64381076365333	6.32008977625094	6.62346907441543	6.04320558211204	6.33434019339156	0.193870288727196	0.466348793236582	0.922971992343415
Merged-chr1-154034874-2	chr1	154034774	154034974	+	670.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	134945.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-132765053-3	chr7	132764959	132765159	+	751.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347630, intron 2 of 3)	intron (NM_001347630, intron 2 of 3)	11857.0	NM_001347630	77938.0	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-163420590-3	chr2	163420496	163420696	+	805.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_151490)	TTS (NR_151490)	825.0	NR_151490	108168734.0	Mm.440000	NR_151490		2900093K20Rik	-	RIKEN cDNA 2900093K20 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-70601593-3	chr4	70601484	70601684	+	911.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66656.0	NM_172694	230316.0	Mm.251188	NM_172694	ENSMUSG00000039270	Megf9	4933405H16Rik|9630025C07|Egfl5|mKIAA0818	multiple EGF-like-domains 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101989477-2	chr15	101989377	101989577	+	604.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	14865.0	NM_031170	16691.0	Mm.358618	NM_031170	ENSMUSG00000049382	Krt8	AA960620|AL022697|AU019895|Card2|EndoA|K8|Krt-2.8|Krt2-8	keratin 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-29518652-4	chr7	29518538	29518738	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-13178.0	NM_001081028	74206.0	Mm.447042	NM_001081028	ENSMUSG00000030583	Sipa1l3	2610511M17Rik	signal-induced proliferation-associated 1 like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-5497995-3	chr6	5497918	5498118	+	596.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1740.0	NM_013743	27273.0	Mm.235547	NM_013743	ENSMUSG00000019577	Pdk4	AV005916	pyruvate dehydrogenase kinase, isoenzyme 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52928683-1	chr13	52928583	52928783	+	541.0	f1_c57bl6.idr	intron (NM_016709, intron 1 of 9)	PB1D7|SINE|Alu	994.0	NM_016709	11992.0	Mm.252034	NM_016709	ENSMUSG00000021460	Auh	C77140|W91705	AU RNA binding protein/enoyl-coenzyme A hydratase	protein-coding	1.07240176734576	1.35526223979984	1.4308394750891	0.779819425692743	0.765509204081718	1.21104427821051	1.74884262040791	1.27202453346575	0.471783328745237	0.731505551694694	0.998431161219273
Merged-chr17-33758146-4	chr17	33758032	33758232	+	971.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008997, intron 1 of 4)	intron (NM_008997, intron 1 of 4)	2354.0	NM_008997	19326.0	Mm.387587	NM_008997	ENSMUSG00000077450	Rab11b	A730055L17Rik	RAB11B, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-78021407-4	chr18	78021315	78021515	+	961.341675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195633, intron 36 of 43)	intron (NM_001195633, intron 36 of 43)	35853.0	NM_001101038	620235.0	Mm.35607	NM_001101038	ENSMUSG00000091055	Siglec15	Cd33l3|EG620235|SIGLEC-I	sialic acid binding Ig-like lectin 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-11635148-4	chr8	11635050	11635250	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_030781)	promoter-TSS (NR_030781)	-114.0	NR_030781	102334.0	Mm.12459	NM_133971	ENSMUSG00000031508	Ankrd10	4833425P12Rik|AW549277	ankyrin repeat domain 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-37636175-2	chr1	37636075	37636275	+	811.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028096, intron 3 of 9)	intron (NM_028096, intron 3 of 9)	83636.0	NM_028096	72097.0	Mm.142607	NM_028096	ENSMUSG00000026090	2010300C02Rik	-	RIKEN cDNA 2010300C02 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-75774699-2	chr2	75774599	75774799	+	804.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	-57478.0	NM_172666	228061.0	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-150859879-4	chr2	150859770	150859970	+	879.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151505, intron 1 of 12)	intron (NR_151505, intron 1 of 12)	-17300.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-119064575-4	chr9	119064510	119064710	+	845.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011700, intron 11 of 18)	intron (NM_011700, intron 11 of 18)	11832.0	NM_001164567	22351.0	Mm.83817	NM_011700	ENSMUSG00000038775	Vill	Villp	villin-like	protein-coding	0.250206826489122	0.444810098446886	0.562367687113922	0.650578124487932	0.501550998382989	0.60170255821248	0.569482216318993	0.257847524163954	0.0204176255560113	0.990698832577548	1
Merged-chr10-57784126-2	chr10	57784026	57784226	+	738.166687	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021272)	promoter-TSS (NM_021272)	-797.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-29032056-3	chr17	29031976	29032176	+	964.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013663)	promoter-TSS (NM_013663)	-584.0	NM_013663	20383.0	Mm.6787	NM_013663	ENSMUSG00000071172	Srsf3	AL024116|Sfrs3|X16	serine/arginine-rich splicing factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-119837988-4	chr8	119837922	119838122	+	985.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028071, intron 2 of 3)	intron (NM_028071, intron 2 of 3)	2557.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-36796153-4	chr5	36796063	36796263	+	992.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026242, intron 1 of 1)	CpG	591.0	NM_026242	67568.0	Mm.332336	NM_026242	ENSMUSG00000055302	Mrfap1	9130413I22Rik|AL022827|Pam14	Morf4 family associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-43727822-4	chr2	43727713	43727913	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21011.0	NM_001301832	76117.0	Mm.217350	NM_153820	ENSMUSG00000049744	Arhgap15	5830480G12Rik	Rho GTPase activating protein 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-44869625-4	chr13	44869519	44869719	+	990.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205043, intron 3 of 17)	LSU-rRNA_Hsa|rRNA|rRNA	132477.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56011981-2	chr17	56011881	56012081	+	620.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026530, intron 6 of 12)	intron (NM_026530, intron 6 of 12)	2780.0	NM_026530	68047.0	Mm.358710	NM_026530	ENSMUSG00000003199	Mpnd	E130307M08Rik	MPN domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-78044101-2	chr13	78044001	78044201	+	855.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163420, intron 8 of 8)	intron (NM_001163420, intron 8 of 8)	19199.0	NM_029315	75507.0	Mm.443255	NM_029315	ENSMUSG00000093668	Pou5f2	1700013G10Rik|SPRM-1|Sprm1	POU domain class 5, transcription factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100492570-2	chr7	100492470	100492670	+	756.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011671)	promoter-TSS (NM_011671)	-788.0	NM_011671	22228.0	Mm.171378	NM_011671	ENSMUSG00000033685	Ucp2	Slc25a8|UCP 2|UCPH	uncoupling protein 2 (mitochondrial, proton carrier)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-75686738-4	chr7	75686633	75686833	+	996.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 13 of 36)	intron (NM_029332, intron 13 of 36)	-161605.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-23899720-2	chr14	23899620	23899820	+	572.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253364, intron 1 of 27)	intron (NM_001253364, intron 1 of 27)	104485.0	NM_001253375	16531.0	Mm.343607	NM_010610	ENSMUSG00000063142	Kcnma1	5730414M22Rik|BKCa|MaxiK|Slo|Slo1|mSlo|mSlo1	potassium large conductance calcium-activated channel, subfamily M, alpha member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-50737777-4	chr16	50737677	50737877	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5004.0	NR_028300	68190.0	Mm.139089	NR_028300		Dubr	5330426P16Rik|Dum	Dppa2 upstream binding RNA	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-87654887-2	chr1	87654787	87654987	+	552.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110192, intron 2 of 26)	L1MC4|LINE|L1	34575.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-105123511-2	chr9	105123382	105123582	+	839.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	8323.0	NM_029385	75686.0	Mm.305810	NM_029385	ENSMUSG00000032565	Nudt16	2310041H06Rik|2810047L04Rik|2900006H04Rik|AI851783	nudix (nucleoside diphosphate linked moiety X)-type motif 16	protein-coding	0.39629124402991	0.259911516707339	0.251649156304692	0.24521897864869	0.771167404446827	0.261763195254774	1.27246063846956	0.723372339543949	3.63545142261216	0.0548607362582472	1
Merged-chr11-63827629-6	chr11	63827541	63827741	+	945.4027710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	94643.0	NM_018805	54710.0	Mm.274426	NM_018805	ENSMUSG00000070407	Hs3st3b1	3-OST-3B|3OST3B1|3Ost3b|AU041882|AW536289|Hs3st3b|m3-OST-3B	heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-100838719-2	chr12	100838619	100838819	+	623.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145448, intron 4 of 12)	intron (NM_145448, intron 4 of 12)	59662.0	NM_145448	217830.0	Mm.218590	NM_145448	ENSMUSG00000021185	Dglucy	9030617O03Rik	D-glutamate cyclase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-139379679-1	chr4	139379579	139379779	+	763.0	f1_c57bl6.idr	promoter-TSS (NM_001160319)	promoter-TSS (NM_001160319)	-980.0	NM_001160319	69116.0	Mm.271956	NM_001160319	ENSMUSG00000066036	Ubr4	1810009A16Rik|A930005E13Rik|D930005K06Rik|Gm1032|Gm1666|N28143|RBAF600|Zubr1|mKIAA0462|p600	ubiquitin protein ligase E3 component n-recognin 4	protein-coding	0.681425895642714	2.09104759779601	1.72164042628104	0.707391519816957	0.685369754419769	1.40575810739304	0.726685031724121	1.77147422494703	-0.693960120106328	0.648456393535716	0.985197290992086
Merged-chr3-129297126-2	chr3	129297026	129297226	+	848.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007934, intron 10 of 19)	intron (NM_007934, intron 10 of 19)	35623.0	NM_007934	13809.0	Mm.1193	NM_007934	ENSMUSG00000028024	Enpep	6030431M22Rik|APA|Bp-1/6C3|Ly-51|Ly51	glutamyl aminopeptidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-45550037-2	chr17	45549937	45550137	+	578.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001013749)	promoter-TSS (NM_001013749)	-360.0	NM_001013749	210573.0	Mm.329064	NM_001013749	ENSMUSG00000096847	Tmem151b	Gm323	transmembrane protein 151B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120776256-4	chr11	120776165	120776365	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7939.0	NM_009053	19719.0	Mm.871	NM_009053	ENSMUSG00000025158	Rfng	-	RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-80261355-2	chr15	80261255	80261455	+	841.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_175109, exon 3 of 4)	exon (NM_175109, exon 3 of 4)	2951.0	NM_175109	66538.0	Mm.39485	NM_175109	ENSMUSG00000051518	Rps19bp1	2510038A11Rik|AI604923|S19BP	ribosomal protein S19 binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-46728951-1	chr13	46728851	46729051	+	555.0	f1_c57bl6.idr	Intergenic	Intergenic	-1102.0	NM_175749	218210.0	Mm.255398	NM_175749	ENSMUSG00000021374	Nup153	B130015D15Rik|C88147	nucleoporin 153	protein-coding	0.14299955921596	1.02719996606764	0.157663145583395	0.47772206971443	0.144369245880554	0.166329191438846	0.352778774438723	0.726815978473385	-0.839654189524212	0.671711235611697	1
Merged-chr9-21759594-2	chr9	21759494	21759694	+	992.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_151673, intron 1 of 4)	B1_Mus2|SINE|Alu	709.0	NR_151672	67629.0	Mm.295642	NM_026282	ENSMUSG00000074476	Spc24	2410030K01Rik|AV109292|Spbc24	SPC24, NDC80 kinetochore complex component, homolog (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-4635337-2	chr18	4635237	4635437	+	832.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081963, intron 1 of 3)	CpG	408.0	NM_001081963	240185.0	Mm.33179	NM_001081963	ENSMUSG00000033960	Jcad	1110056P05Rik|9430020K01Rik|Gm328|mKIAA1462	junctional cadherin 5 associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-132087255-4	chr3	132087181	132087381	+	939.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020265, intron 1 of 3)	intron (NM_020265, intron 1 of 3)	1989.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-102029281-2	chr7	102029181	102029381	+	568.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029211, intron 5 of 8)	intron (NM_029211, intron 5 of 8)	-11126.0	NM_010531	16068.0	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-98841089-2	chr7	98840989	98841189	+	666.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285794, intron 2 of 5)	intron (NM_001285794, intron 2 of 5)	2244.0	NM_001285795	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-100161863-2	chr6	100161763	100161963	+	800.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	125495.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-36093743-3	chr8	36093625	36093825	+	892.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1103.0	NM_172911	244418.0	Mm.244971	NM_172911	ENSMUSG00000050271	Prag1	9830148H23|D8Ertd82e|NACK|Sgk223|mFLJ00269	PEAK1 related kinase activating pseudokinase 1	protein-coding	1.09919047092024	1.55903820912988	1.75572071065726	1.14470757992531	1.39773759111512	1.83817755931023	0.95683017767693	1.99241319171445	0.647243498077827	0.593441223741784	0.9706660979479
Merged-chr3-88522260-4	chr3	88522158	88522358	+	939.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10137.0	NM_001029890	72640.0	Mm.275154	NM_001029890	ENSMUSG00000074480	Mex3a	2700083E18Rik|Gm411|Rkhd4	mex3 RNA binding family member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19498898-2	chr7	19498798	19498998	+	696.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9433.0	NM_177692	232946.0	Mm.64557	NM_177692	ENSMUSG00000057667	Bloc1s3	BC043666|Blos3|E230011O18|rp	biogenesis of lysosomal organelles complex-1, subunit 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-78576745-4	chr16	78576643	78576843	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252440)	promoter-TSS (NM_001252440)	-55.0	NM_025967	67102.0	Mm.37332	NM_025967	ENSMUSG00000022864	D16Ertd472e	1700010I10Rik|2310009O17Rik|E330003K22Rik|Eurl	DNA segment, Chr 16, ERATO Doi 472, expressed	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-43254273-2	chr6	43254173	43254373	+	660.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11371.0	NM_133674	54324.0	Mm.320978	NM_133674	ENSMUSG00000033542	Arhgef5	2210412D05Rik|AA717842|AW495314|Tim1	Rho guanine nucleotide exchange factor (GEF) 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-69521002-2	chr5	69520902	69521102	+	635.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023784, intron 4 of 5)	intron (NM_023784, intron 4 of 5)	21645.0	NM_023784	75581.0	Mm.154776	NM_023784	ENSMUSG00000029158	Yipf7	2310016N21Rik|Yip1b	Yip1 domain family, member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105991021-4	chr8	105990935	105991135	+	838.716675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176913, intron 1 of 11)	intron (NM_176913, intron 1 of 11)	738.0	NM_001301204	319446.0	Mm.248357	NM_176913	ENSMUSG00000053687	Dpep2	F630103D06Rik|MBD-2	dipeptidase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129593941-5	chr2	129593800	129594000	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291022, intron 1 of 4)	intron (NM_001291022, intron 1 of 4)	731.0	NM_001291022	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	3.60659471933022	4.20844570233591	3.61288969810746	2.91255105025654	3.69625603697223	3.13856883003217	4.2134468072286	3.81325819106267	0.167663319468013	0.755859404051765	0.998431161219273
Merged-chr13-23565413-2	chr13	23565313	23565513	+	719.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A2|LTR|ERVL-MaLR	-3048.0	NM_178205	319151.0	Mm.261658	NM_178205	ENSMUSG00000069273	Hist1h3e	H3-f|H3.1	histone cluster 1, H3e	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-121842119-4	chr5	121842018	121842218	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5259.0	NM_008507	16923.0	Mm.65493	NM_008507	ENSMUSG00000042594	Sh2b3	AI429800|Lnk	SH2B adaptor protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-3032300-2	chr3	3032201	3032401	+	739.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-475729.0	NM_013920	30942.0	Mm.330897	NM_013920	ENSMUSG00000017688	Hnf4g	NR2A2	hepatocyte nuclear factor 4, gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-78130195-1	chr10	78130095	78130295	+	557.0	f0_c57.idr	Intergenic	Intergenic	39573.0	NM_138601	28295.0	Mm.268691	NM_138601	ENSMUSG00000053329	D10Jhu81e	C21orf33|ES1	DNA segment, Chr 10, Johns Hopkins University 81 expressed	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150652126-2	chr4	150652026	150652226	+	680.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173774)	promoter-TSS (NM_173774)	48.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-142702401-2	chr6	142702301	142702501	+	621.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310143)	promoter-TSS (NM_001310143)	-127.0	NM_001310143	20928.0	Mm.35670	NM_011511	ENSMUSG00000030249	Abcc9	AI414027|AI449286|SUR2A|SUR2B|Sur2	ATP-binding cassette, sub-family C (CFTR/MRP), member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-68280099-4	chr10	68279957	68280157	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1331.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	3.25617319107214	2.89740658268628	2.79817368581049	3.35687606280212	3.95283650985161	2.78348142107935	2.6888097892654	2.60362625476226	0.104552150493068	0.876503316204385	0.998431161219273
Merged-chr4-48481378-2	chr4	48481278	48481478	+	569.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7915.0	NM_001355740	269536.0	Mm.272025	NM_172304	ENSMUSG00000028345	Tex10	2610206N19Rik|2810462N03Rik|BC006867	testis expressed gene 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-51094610-2	chr14	51094416	51094616	+	791.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_021472, intron 1 of 1)	B1_Mur3|SINE|Alu	-1484.0	NM_007447	11727.0	Mm.202665	NM_007447	ENSMUSG00000072115	Ang	AI385586|Ang1|Rnase5|Rnase5a	angiogenin, ribonuclease, RNase A family, 5	protein-coding	0.688208446160349	2.11580854938609	0.724116392767463	1.51357849652682	0.691639540139284	1.37429531242728	1.15639353054519	1.27042522276095	-0.934748866956267	0.518183201497237	0.947641799425091
Merged-chr19-53322843-2	chr19	53322743	53322943	+	933.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360348, intron 1 of 5)	ORR1C1|LTR|ERVL-MaLR	-6570.0	NM_010847	17859.0	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-84424059-3	chr10	84423949	84424149	+	960.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004363, intron 1 of 6)	intron (NM_001004363, intron 1 of 6)	16422.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-142098014-4	chr7	142097919	142098119	+	928.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2735.0	NM_008748	18218.0	Mm.39725	NM_008748	ENSMUSG00000037887	Dusp8	5530400B01Rik|AI593498|Nttp1	dual specificity phosphatase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-39006857-3	chr6	39006735	39006935	+	757.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 5 of 12)	ORR1F|LTR|ERVL-MaLR	60751.0	NR_040523	69986.0	Mm.490941	NR_040523	ENSMUSG00000100121	1700025N23Rik	-	RIKEN cDNA 1700025N23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-126740575-2	chr4	126740475	126740675	+	692.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-4306.0	NM_198960	332937.0	Mm.331881	NM_198960	ENSMUSG00000042477	Tfap2e	AI505200|AP-2e|Tcfap2e	transcription factor AP-2, epsilon	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-163054532-4	chr2	163054428	163054628	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008652)	promoter-TSS (NM_008652)	-107.0	NM_008652	17865.0	Mm.4594	NM_008652	ENSMUSG00000017861	Mybl2	B-Myb|Bmyb	myeloblastosis oncogene-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-12002483-3	chr2	12002382	12002582	+	724.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	224729.0	NM_177268	320816.0	Mm.260201	NM_177268	ENSMUSG00000047909	Ankrd16	2810455F06Rik|AI646698|D430029B21Rik	ankyrin repeat domain 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-119897533-2	chr7	119897433	119897633	+	608.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029610, intron 1 of 3)	intron (NM_029610, intron 1 of 3)	1241.0	NM_029610	73919.0	Mm.46381	NM_029610	ENSMUSG00000030922	Lyrm1	1110065L10Rik|2310004B22Rik|4930404J24Rik	LYR motif containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-8433715-2	chr16	8433616	8433816	+	886.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13D5|LTR|ERVK	-8580.0	NM_029070	74720.0	Mm.159318	NM_029070	ENSMUSG00000022715	Tmem114	4930511J11Rik|Cldn26	transmembrane protein 114	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-41303831-4	chr10	41303727	41303927	+	978.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133999)	promoter-TSS (NM_133999)	-586.0	NM_133999	103199.0	Mm.277242	NM_133999	ENSMUSG00000038417	Fig4	A530089I17Rik|AI326867|Sac3	FIG4 phosphoinositide 5-phosphatase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-90661425-2	chr6	90661325	90661525	+	920.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001134384, exon 14 of 14)	3' UTR (NM_001134384, exon 14 of 14)	42179.0	NM_001037493	71699.0	Mm.272633	NM_027868	ENSMUSG00000030089	Slc41a3	1010001P06Rik|AI480742|SLC41A1-L2	solute carrier family 41, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44638802-2	chr9	44638702	44638902	+	577.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_181324, exon 14 of 14)	3' UTR (NM_181324, exon 14 of 14)	33910.0	NM_181324	13209.0	Mm.267061	NM_007841	ENSMUSG00000032097	Ddx6	1110001P04Rik|C430015D01Rik|E230023J21Rik|HLR2|mRCK/P54|p54|rck	DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-32794839-2	chr12	32794739	32794939	+	595.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-25496.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-86065546-5	chr5	86065373	86065573	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_007683, exon 1 of 19)	5' UTR (NM_007683, exon 1 of 19)	110.0	NM_001345902	12617.0	Mm.4649	NM_007683	ENSMUSG00000029253	Cenpc1	CENP-C|Cenpc	centromere protein C1	protein-coding	5.04354117925079	5.44146194163299	4.66973773762305	4.63918374820957	5.46422159607108	4.94935954982949	5.19124756830776	4.8314657005994	0.181174121887985	0.587757034337628	0.968220700072259
Merged-chr13-67484225-4	chr13	67484140	67484340	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001076791)	promoter-TSS (NM_001076791)	13.0	NM_001076791	408067.0	Mm.315879	NM_001076791	ENSMUSG00000059839	Zfp874b	9630025I21Rik|Rslcan16	zinc finger protein 874b	protein-coding	3.73565668548407	4.9667675728755	3.8317636817187	4.22918145421203	3.7006141974663	4.71185183938664	4.07898917274849	4.02072619031037	-0.139147785715766	0.767532182317667	0.998431161219273
Merged-chr2-162661604-2	chr2	162661504	162661704	+	680.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021464)	promoter-TSS (NM_021464)	441.0	NR_033569	77288.0	Mm.376571	NR_033569		9430021M05Rik	-	RIKEN cDNA 9430021M05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-35771587-2	chr5	35771487	35771687	+	577.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177678, intron 1 of 19)	intron (NM_177678, intron 1 of 19)	13707.0	NM_001177698	231148.0	Mm.254446	NM_177678	ENSMUSG00000029095	Ablim2	AI606905|C230091L11	actin-binding LIM protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122881463-2	chr5	122881363	122881563	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001003953, intron 17 of 22)	intron (NM_001003953, intron 17 of 22)	18887.0	NM_013910	30841.0	Mm.86406	NM_013910	ENSMUSG00000029475	Kdm2b	Cxxc2|Fbl10|Fbxl10|Jhdm1b|PCCX2	lysine (K)-specific demethylase 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-100836013-2	chr10	100835913	100836113	+	644.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-94378.0	NR_152765	102639396.0	Mm.404529	NR_152765		Gm35722	-	predicted gene, 35722	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16047882-2	chr7	16047792	16047992	+	1000.0	f0_balb.idr|f0_c57.idr	Intergenic	CpG	-23953.0	NM_001347559	666528.0	Mm.290718	NM_001099277	ENSMUSG00000078796	Zfp541	EG666528|Znf541	zinc finger protein 541	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-6378939-4	chr2	6378841	6379041	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181399, intron 1 of 13)	intron (NM_181399, intron 1 of 13)	26205.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-134638023-2	chr5	134637923	134638123	+	593.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_033561, intron 1 of 6)	intron (NM_033561, intron 1 of 6)	1386.0	NM_001312867	22384.0	Mm.27955	NM_033561	ENSMUSG00000040731	Eif4h	AU018978|D5Ertd355e|E430026L18Rik|Ef4h|Wbscr1|Wscr1|eIF-4H	eukaryotic translation initiation factor 4H	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-93375280-6	chr10	93375195	93375395	+	929.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39084.0	NR_038014	432488.0	Mm.32833	NR_038014		Gm17745	Gm3546	predicted gene, 17745	ncRNA	1.59207002367302	1.79957954246108	2.61354092926036	2.09844483664648	3.10424132897154	3.54359444512693	3.36290520682831	2.95852053833813	2.30956500492884	0.00239769383587164	0.0383908327083469
Merged-chr7-64000510-2	chr7	64000410	64000610	+	974.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-61595.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-43798076-3	chr7	43797962	43798162	+	944.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_008940, exon 1 of 5)	5' UTR (NM_008940, exon 1 of 5)	485.0	NM_008940	259277.0	Mm.458023	NM_008940	ENSMUSG00000064023	Klk8	BSP1|NP|Nrpn|Prss19	kallikrein related-peptidase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-22672108-3	chr11	22671967	22672167	+	676.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	159784.0	NM_153596	103765.0	Mm.221274	NM_153596	ENSMUSG00000049904	Tmem17	AI503894|AW049890	transmembrane protein 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-96855964-2	chr5	96855864	96856064	+	794.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	62579.0	NM_013470	11745.0	Mm.7214	NM_013470	ENSMUSG00000029484	Anxa3	Anx3	annexin A3	protein-coding	0.937816952315071	0.720759198399642	0.185270608587605	0.179504607247188	0.171298096600974	0.194362539227967	0.915530714477501	0.180514321767305	-0.769656562234546	0.712112239015517	1
Merged-chr5-9069066-4	chr5	9068979	9069179	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31658.0	NM_001081029	652925.0	Mm.439954	NM_001081029	ENSMUSG00000079659	Tmem243	4930420K17Rik|E030031F02Rik	transmembrane protein 243, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-88740049-3	chr10	88739957	88740157	+	682.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025859, intron 4 of 5)	ORR1D2|LTR|ERVL-MaLR	8643.0	NM_025859	104303.0	Mm.291247	NM_025859	ENSMUSG00000060904	Arl1	2310008D22Rik|AU019749	ADP-ribosylation factor-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-29331377-2	chr7	29331277	29331477	+	585.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081028, exon 19 of 23)	exon (NM_001081028, exon 19 of 23)	27372.0	NM_013874	29861.0	Mm.101885	NM_013874	ENSMUSG00000030584	Dpf1	Neud4	D4, zinc and double PHD fingers family 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70578517-3	chr14	70578419	70578619	+	988.3333130000001	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	intron (NM_001360474, intron 1 of 2)	intron (NM_001360474, intron 1 of 2)	420.0	NM_001360474	213484.0	Mm.34191	NM_153136	ENSMUSG00000045211	Nudt18	BC036718	nudix (nucleoside diphosphate linked moiety X)-type motif 18	protein-coding	0.782394380915078	0.482534720433955	1.72479023637988	1.42169580627993	0.633945287626056	0.485308460515091	0.472844349834663	0.672157851470906	-3.24964398346718	0.0536313913170973	0.339245659860255
Merged-chr4-125089979-3	chr4	125089889	125090089	+	670.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151472, intron 3 of 7)	intron (NR_151472, intron 3 of 7)	4855.0	NR_151472	70088.0	Mm.291214	NM_027310	ENSMUSG00000028863	Meaf6	2310005N01Rik|2810036M01Rik	MYST/Esa1-associated factor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-120197763-4	chr10	120197665	120197865	+	779.479126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359184, intron 1 of 11)	intron (NM_001359184, intron 1 of 11)	3832.0	NM_028679	73914.0	Mm.146194	NM_028679	ENSMUSG00000020227	Irak3	4833428C18Rik|AI563835|IRAK-M	interleukin-1 receptor-associated kinase 3	protein-coding	0.893578309078829	1.85216361981874	2.16420098136335	1.31746104126985	1.26115822701887	0.958147409216552	2.10024894628789	1.32425331608676	-0.486690292940669	0.700049153874772	0.998431161219273
Merged-chr10-34112477-3	chr10	34112371	34112571	+	730.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	15501.0	NM_175449	215900.0	Mm.34479	NM_175449	ENSMUSG00000046031	Fam26f	A630077B13Rik|Calhm6	family with sequence similarity 26, member F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-22722008-2	chr10	22721908	22722108	+	714.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011603, intron 1 of 6)	intron (NM_011603, intron 1 of 6)	7424.0	NR_106123	102465768.0		NR_106123	ENSMUSG00000098714	Mir7663	Gm28034|mmu-mir-7663	microRNA 7663	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-60753358-2	chr10	60753258	60753458	+	899.3333130000001	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023596)	promoter-TSS (NM_023596)	-576.0	NM_023596	71279.0	Mm.284462	NM_023596	ENSMUSG00000020100	Slc29a3	4933435C21Rik|AW987637|Ent3	solute carrier family 29 (nucleoside transporters), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-62965612-2	chr14	62965559	62965759	+	780.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18851.0	NM_001037751	432867.0	Mm.99387	NM_001037751	ENSMUSG00000075574	Defb48	Defb42|EG432867	defensin beta 48	protein-coding	-1.06932346315282	-1.04545378193536	-0.220844647149311	-1.06494782147003	-1.06867040657128	-1.04264807175102	-1.05547001227371	-1.06448932552894	-3.08190232315036	0.346744811462451	1
Merged-chr2-128364376-4	chr2	128364275	128364475	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028590, intron 1 of 2)	intron (NR_028590, intron 1 of 2)	64976.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64834436-4	chr5	64834336	64834536	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30913.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-163666620-2	chr2	163666520	163666720	+	657.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039390, intron 2 of 4)	B2_Mm1a|SINE|B2	8162.0	NM_001164053	18769.0	Mm.10091	NM_011106	ENSMUSG00000035268	Pkig	PKIgamma	protein kinase inhibitor, gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-142445794-2	chr5	142445694	142445894	+	657.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_199068, intron 2 of 8)	intron (NM_199068, intron 2 of 8)	-18137.0	NM_172725	231855.0	Mm.78250	NM_172725	ENSMUSG00000039623	Ap5z1	C330006K01Rik	adaptor-related protein complex 5, zeta 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-121488292-3	chr10	121488226	121488426	+	858.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-12076.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	3.49886471723873	2.5621537050839	2.61973328147688	2.78726003069493	3.47443993244916	3.61881589418843	3.10178107129546	1.83457660770892	0.396417608311319	0.584901522734038	0.967268722441911
Merged-chr15-13319468-3	chr15	13319387	13319587	+	682.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-145812.0	NM_007666	12563.0	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35122103-4	chr17	35121977	35122177	+	818.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001303476)	promoter-TSS (NM_001303476)	-24.0	NM_001303446	13001.0	Mm.378901	NM_009975	ENSMUSG00000024387	Csnk2b	CK II beta	casein kinase 2, beta polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-119944498-2	chr8	119944398	119944598	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009462, intron 4 of 13)	intron (NM_009462, intron 4 of 13)	34138.0	NM_001310630	22224.0	Mm.256910	NM_009462	ENSMUSG00000031826	Usp10	2610014N07Rik|UBPO|Uchrp|mKIAA0190	ubiquitin specific peptidase 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-75900380-3	chr16	75900280	75900480	+	555.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023380, intron 1 of 7)	intron (NM_023380, intron 1 of 7)	8886.0	NM_023380	67742.0	Mm.131406	NM_023380	ENSMUSG00000022876	Samsn1	4930571B16Rik|930571B16Rik|Hacs1|SLy2	SAM domain, SH3 domain and nuclear localization signals, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-49324469-4	chr13	49324362	49324562	+	977.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15254.0	NM_015759	30938.0	Mm.291089	NM_015759	ENSMUSG00000037946	Fgd3	5830461L01Rik|ZFYVE5	FYVE, RhoGEF and PH domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-152842917-2	chr2	152842817	152843017	+	646.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-5047.0	NM_001141975	72119.0	Mm.407737	NM_028109	ENSMUSG00000027469	Tpx2	2610005B21Rik|DIL2|REPP86|p100	TPX2, microtubule-associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167360234-3	chr2	167360138	167360338	+	870.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-11060.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-104473904-2	chr14	104473804	104474004	+	851.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5905.0	NM_011143	18996.0	Mm.246550	NM_011143	ENSMUSG00000048349	Pou4f1	Brn-3|Brn-3.0|Brn3|Brn3.0|Brn3a|E130119J07Rik	POU domain, class 4, transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53082689-2	chr4	53082589	53082789	+	807.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 15 of 49)	intron (NM_013454, intron 15 of 49)	70809.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-19957985-4	chr10	19957889	19958089	+	925.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008580, intron 1 of 29)	MLT1A0|LTR|ERVL-MaLR	23463.0	NM_008580	26408.0	Mm.6595	NM_008580	ENSMUSG00000071369	Map3k5	7420452D20Rik|ASK|ASK1|MAPKKK5|Mekk5	mitogen-activated protein kinase kinase kinase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-42433755-4	chr6	42433660	42433860	+	922.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207028)	promoter-TSS (NM_207028)	-775.0	NM_207028	387353.0	Mm.377914	NM_207028	ENSMUSG00000048284	Tas2r126	T2R12|T2R26|Tas2r26|Tas2r41|mGR26|mt2r35	taste receptor, type 2, member 126	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-32784173-2	chr19	32784073	32784273	+	578.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008960, intron 2 of 8)	RLTR11A2|LTR|ERVK	26596.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43479102-2	chr4	43479002	43479202	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4607.0	NM_019436	54390.0	Mm.31775	NM_019436	ENSMUSG00000028460	Sit1	Sit	suppression inducing transmembrane adaptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78588429-2	chr15	78588329	78588529	+	949.625	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A2|LTR|ERVL-MaLR	-6840.0	NR_155437	102640742.0	Mm.253544	NR_155437	ENSMUSG00000116097	Gm36738	-	predicted gene, 36738	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-12039412-4	chr17	12039298	12039498	+	978.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016694, intron 10 of 11)	intron (NM_016694, intron 10 of 11)	-79886.0	NM_026644	68262.0	Mm.258300	NM_026644	ENSMUSG00000023827	Agpat4	1500003P24Rik	1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)	protein-coding	2.75261889479659	3.66324937526276	4.24884892131064	3.3505906654438	3.64642031960139	3.49920106992674	3.94161062225448	4.38111126643684	0.440708394092385	0.418448726106188	0.898344473784214
Merged-chr16-32164589-4	chr16	32164530	32164730	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146069, intron 1 of 3)	intron (NM_146069, intron 1 of 3)	964.0	NM_146069	224109.0	Mm.33498	NM_146069	ENSMUSG00000052384	Nrros	E430025L02Rik|Lrcc33|Lrrc33	negative regulator of reactive oxygen species	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55491483-3	chr19	55491395	55491595	+	874.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360431, intron 6 of 8)	intron (NM_001360431, intron 6 of 8)	175438.0	NM_001293686	53611.0	Mm.258637	NM_016862	ENSMUSG00000024983	Vti1a	1110014F16Rik|1110018K19Rik|4921537J05Rik|MVti1|MVti1a|Vti1|Vti1-rp2	vesicle transport through interaction with t-SNAREs 1A	protein-coding	4.96552029676911	4.40706631981165	4.83810390793769	4.25875592858677	3.36901515805782	3.23897821074443	3.83756868028926	3.63702779461084	-1.49713481150347	0.000700807532639214	0.0146656199591953
Merged-chr9-61511532-3	chr9	61511424	61511624	+	764.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	139158.0	NM_001083927	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84570577-1	chr8	84570477	84570677	+	541.0	f0_balb.idr	intron (NM_001252060, intron 22 of 47)	intron (NM_001252060, intron 22 of 47)	92275.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	-1.84303373260285	-1.81303463126392	-1.82210660711932	-1.82955859819738	-1.84092785115721	-1.81106869625141	-1.8200529106377	-1.54273750312762	1.50114612804783	0.670102668014672	1
Merged-chr16-57495894-4	chr16	57495781	57495981	+	897.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	-53361.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-28911703-4	chr16	28911682	28911882	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177718, intron 1 of 1)	intron (NM_177718, intron 1 of 1)	17916.0	NM_177718	239796.0	Mm.155887	NM_177718	ENSMUSG00000051065	Mb21d2	1600021P15Rik|A430031N04|C87006	Mab-21 domain containing 2	protein-coding	3.10971426910952	3.16947018537614	2.65830097579279	3.20564018523412	1.68512172608438	2.77315060930027	2.05028272857078	3.1505609493421	-0.941547420835558	0.214381491241974	0.704698392307178
Merged-chr19-56400406-4	chr19	56400321	56400521	+	865.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007611, intron 1 of 6)	ORR1F|LTR|ERVL-MaLR	3292.0	NM_007611	12369.0	Mm.35687	NM_007611	ENSMUSG00000025076	Casp7	AI314680|CMH-1|ICE-IAP3|Mch3|caspase-7|mCASP-7	caspase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-98181297-2	chr7	98181197	98181397	+	754.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045971, intron 3 of 3)	ORR1E|LTR|ERVL-MaLR	-3023.0	NM_007602	12337.0	Mm.326847	NM_007602	ENSMUSG00000035547	Capn5	nCL-3	calpain 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-35535069-4	chr12	35534970	35535170	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013464)	promoter-TSS (NM_013464)	-81.0	NM_001314027	11622.0	Mm.341377	NM_013464	ENSMUSG00000019256	Ahr	Ah|Ahh|Ahre|In|bHLHe76	aryl-hydrocarbon receptor	protein-coding	4.39383904920837	4.01952078382912	3.88309481142787	4.72670700934234	4.92615107211395	4.77361184766876	3.83209355067145	4.58841346760295	0.370965865630583	0.377137286258385	0.87006021545855
Merged-chr14-105297497-3	chr14	105297421	105297621	+	872.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029561, intron 4 of 7)	intron (NM_029561, intron 4 of 7)	38848.0	NM_001190989	76273.0	Mm.290669	NM_029561	ENSMUSG00000053253	Ndfip2	0710001O20Rik|2810436B12Rik|9130207N19Rik|N4wbp5a|mKIAA1165	Nedd4 family interacting protein 2	protein-coding	2.75832929963885	1.70329589195482	1.61964012219627	3.27445496885868	4.87258727715649	4.34952218807816	4.54398368359859	4.83584712891121	3.08767780491001	1.66065013023664e-07	1.3582781073313e-05
Merged-chr15-59469385-2	chr15	59469285	59469485	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026746, intron 4 of 6)	(T)n|Simple_repeat|Simple_repeat	95187.0	NM_001164604	68501.0	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120550887-2	chr11	120550787	120550987	+	659.833374	f1_balb.idr|f1_c57bl6.idr	exon (NM_026814, exon 1 of 3)	exon (NM_026814, exon 1 of 3)	245.0	NM_026814	68701.0	Mm.46477	NM_026814	ENSMUSG00000025129	Ppp1r27	1110033I14Rik|Dysfip1|toonin	protein phosphatase 1, regulatory subunit 27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-83639154-2	chr17	83639054	83639254	+	562.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7259.0	NM_153512	225030.0	Mm.223506	NM_153512	ENSMUSG00000045053	Kcng3	KV6.3|Kv10.1a|Kv10.1b	potassium voltage-gated channel, subfamily G, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-17516213-1	chr6	17516113	17516313	+	659.0	f0_balb.idr	intron (NM_008591, intron 4 of 21)	intron (NM_008591, intron 4 of 21)	52256.0	NM_008591	17295.0	Mm.86844	NM_008591	ENSMUSG00000009376	Met	AI838057|HGF|HGFR|Par4|c-Met	met proto-oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122219806-2	chr5	122219706	122219906	+	913.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359454, intron 3 of 7)	intron (NM_001359454, intron 3 of 7)	9519.0	NM_028752	74096.0	Mm.28804	NM_028752	ENSMUSG00000064267	Hvcn1	0610039P13Rik|AI450555|BTS|HV1|Vsop.|mVSOP	hydrogen voltage-gated channel 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-55183352-2	chr13	55183252	55183452	+	711.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-26430.0	NM_008739	18193.0	Mm.168965	NM_008739	ENSMUSG00000021488	Nsd1	AI528500|KMT3B	nuclear receptor-binding SET-domain protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4092838-2	chr19	4092738	4092938	+	878.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	-4513.0	NM_026373	52004.0	Mm.29609	NM_026373	ENSMUSG00000024856	Cdk2ap2	5830466O21Rik|D19Ertd144e|Doc-1r	CDK2-associated protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-144215468-4	chr2	144215365	144215565	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26175.0	NR_136884	433481.0	Mm.330630	NR_136884	ENSMUSG00000074758	Gm5535	EG433481	predicted gene 5535	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90452973-2	chr2	90452873	90453073	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 13 of 23)	intron (NM_008982, intron 13 of 23)	26201.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-89149048-2	chr15	89148948	89149148	+	815.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011161, intron 1 of 11)	intron (NM_011161, intron 1 of 11)	558.0	NM_011161	19094.0	Mm.91969	NM_011161	ENSMUSG00000053137	Mapk11	P38b|Prkm11|Sapk2|Sapk2b|p38-2|p38beta|p38beta2	mitogen-activated protein kinase 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-18619276-4	chr8	18619122	18619322	+	951.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173189, intron 3 of 13)	B3|SINE|B2	24091.0	NM_173189	244329.0	Mm.235296	NM_173189	ENSMUSG00000039842	Mcph1	5430437K10Rik|BRIT1|D030046N04Rik|MCT|Tg(HLA-A2.1)1Enge	microcephaly, primary autosomal recessive 1	protein-coding	1.64331248139826	1.53383826787398	1.64697592693393	2.56818881358286	1.77045530215792	1.86920443373051	1.29932809844558	1.04082520660681	-1.1433025035896	0.306480607532511	0.806865344318695
Merged-chr18-34889053-4	chr18	34888997	34889197	+	967.383301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27890.0	NM_007913	13653.0	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-122887127-4	chr4	122887028	122887228	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-1052.0	NM_001358036	12331.0	Mm.8687	NM_007598	ENSMUSG00000028656	Cap1	-	CAP, adenylate cyclase-associated protein 1 (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132181735-2	chr4	132181635	132181835	+	562.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30521.0	NM_145393	213541.0	Mm.23998	NM_145393	ENSMUSG00000040025	Ythdf2	9430020E02Rik|HGRG8|NY-REN-2	YTH domain family 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-112060134-4	chr10	112060032	112060232	+	666.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027018)	promoter-TSS (NM_027018)	-57.0	NM_027018	69286.0	Mm.47058	NM_027018	ENSMUSG00000020213	Glipr1l1	1700011E04Rik	GLI pathogenesis-related 1 like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-54258663-2	chr14	54258565	54258765	+	637.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134076)	promoter-TSS (NM_134076)	-567.0	NM_134076	105501.0	Mm.28771	NM_134076	ENSMUSG00000040997	Abhd4	1110035H23Rik|AI429574|Abh4	abhydrolase domain containing 4	protein-coding	-1.26550836321643	-1.23538490674683	-1.24673049817958	-1.25605010478787	-1.26497736998827	-0.580802564315158	-1.24416210496749	-1.25438189966081	2.74054745292391	0.426663645876262	1
Merged-chr17-48347484-4	chr17	48347393	48347593	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031254, intron 1 of 4)	intron (NM_031254, intron 1 of 4)	1092.0	NM_001272078	83433.0	Mm.261623	NM_031254	ENSMUSG00000023992	Trem2	TREM-2|Trem2a|Trem2b|Trem2c	triggering receptor expressed on myeloid cells 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-35288300-1	chr12	35288200	35288400	+	594.0	f0_balb.idr	Intergenic	L1MD|LINE|L1	-93403.0	NR_030449	751520.0		NR_030449	ENSMUSG00000076253	Mir680-3	Mirn680-3	microRNA 680-3	ncRNA	1.21644222047039	0.698013463125166	0.685224310645438	1.40492758403056	1.33020924558404	0.700866565928914	1.75318202919236	0.874891198410831	0.765875729441724	0.61058441700161	0.975183586809945
Merged-chr17-34633881-2	chr17	34633781	34633981	+	761.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4195.0	NM_030890	260297.0	Mm.390965	NM_030890	ENSMUSG00000015476	Prrt1	Bat-4|Bat4|D17H6S54E|DSPD1|G5b|NG5|ORF31|SynDIG4	proline-rich transmembrane protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-53270873-2	chr18	53270773	53270973	+	592.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029394, intron 1 of 6)	L2|LINE|L2	25211.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-63429576-4	chr10	63429484	63429684	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177612)	promoter-TSS (NM_177612)	-514.0	NM_177612	216033.0	Mm.444692	NM_177612	ENSMUSG00000060843	Ctnna3	4930429L08Rik|4933408A16|Catna3|Vr22	catenin (cadherin associated protein), alpha 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101979584-4	chr11	101979471	101979671	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028207, intron 2 of 2)	intron (NM_028207, intron 2 of 2)	5220.0	NM_028207	72349.0	Mm.196295	NM_028207	ENSMUSG00000003518	Dusp3	2210015O03Rik|5031436O03Rik|T-DSP11|VHR	dual specificity phosphatase 3 (vaccinia virus phosphatase VH1-related)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-8946607-2	chr12	8946507	8946707	+	733.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB2|LINE|L1	-1322.0	NM_010770	17182.0	Mm.42226	NM_010770	ENSMUSG00000020583	Matn3	AV009181	matrilin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-54338673-3	chr4	54338564	54338764	+	871.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	512619.0	NM_028053	52076.0	Mm.27184	NM_028053	ENSMUSG00000028420	Tmem38b	1600017F22Rik|AA437809|AV051057|D4Ertd89e|TRIC-B|mg33b	transmembrane protein 38B	protein-coding	0.875696233433142	1.49360169277063	0.940669597803642	0.91710048638266	2.73100117523687	2.36901922545248	2.3718191570596	1.39825222880942	4.17260560636722	0.00201504619764118	0.0335785059434707
Merged-chr3-84228365-2	chr3	84228265	84228465	+	832.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271726, intron 1 of 11)	intron (NM_001271726, intron 1 of 11)	-7488.0	NM_030706	80890.0	Mm.44876	NM_030706	ENSMUSG00000027993	Trim2	mKIAA0517|narf	tripartite motif-containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-62998028-3	chr9	62997957	62998157	+	763.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17178.0	NM_019663	56469.0	Mm.431253	NM_019663	ENSMUSG00000032405	Pias1	2900068C24Rik|Ddxbp1|GBP	protein inhibitor of activated STAT 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-82346069-6	chr15	82346037	82346237	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026914)	promoter-TSS (NM_026914)	91.0	NM_026914	69029.0	Mm.260042	NM_026914	ENSMUSG00000022452	Smdt1	1500032L24Rik|Emre	single-pass membrane protein with aspartate rich tail 1	protein-coding	1.45507675358692	1.35130164041161	0.927061280477763	1.64601041771867	1.89677546735019	1.36090167792073	0.930444080044747	1.655210044607	0.513534460097624	0.687593837217202	0.996533206832645
Merged-chr18-67464139-1	chr18	67464039	67464239	+	542.0	f1_balb.idr	promoter-TSS (NM_144867)	promoter-TSS (NM_144867)	-710.0	NM_144867	225655.0	Mm.221420	NM_144867	ENSMUSG00000024530	Prelid3a	A230074A19Rik|BC019561|Slmo1	PRELI domain containing 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-181917632-4	chr2	181917578	181917778	+	978.392822	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53318.0	NM_025901	67005.0	Mm.271986	NM_025901	ENSMUSG00000038628	Polr3k	12.3kDa|1500004O14Rik|AI196849|AU014893|C11|RPC10|RPC11	polymerase (RNA) III (DNA directed) polypeptide K	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-80397579-2	chr1	80397479	80397679	+	603.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48353.0	NR_040460	72208.0	Mm.396181	NR_040460	ENSMUSG00000101483	1700016L21Rik	CD11c-DTR|DCKO|DTR-GFP|DTR-GRP|Jr3|Tg(Itgax-DTR/EGFP)57Lan	RIKEN cDNA 1700016L21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-69570497-4	chr18	69570391	69570591	+	970.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 8 of 19)	intron (NM_001361128, intron 8 of 19)	224331.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-21130583-3	chr5	21130506	21130706	+	823.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A0|LTR|ERVL-MaLR	-45673.0	NR_153366	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16071068-4	chr7	16070968	16071168	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347559)	promoter-TSS (NM_001347559)	-777.0	NM_001347559	666528.0	Mm.290718	NM_001099277	ENSMUSG00000078796	Zfp541	EG666528|Znf541	zinc finger protein 541	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-9531406-2	chr11	9531306	9531506	+	646.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178259, intron 45 of 61)	L1MA8|LINE|L1	339464.0	NM_178259	268379.0	Mm.39270	NM_178259	ENSMUSG00000004668	Abca13	9830132L24|A930002G16Rik|AI956815	ATP-binding cassette, sub-family A (ABC1), member 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-91023334-3	chr5	91023229	91023429	+	873.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4188.0	NM_053087	71920.0	Mm.197319	NM_053087	ENSMUSG00000035020	Epgn	2310069M11Rik|epigen	epithelial mitogen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-41238315-4	chr12	41238225	41238425	+	977.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053122, intron 4 of 6)	intron (NM_053122, intron 4 of 6)	214235.0	NM_053122	93757.0	Mm.363813	NM_053122	ENSMUSG00000056899	Immp2l	AI853880|IMP2|Tg(HLA-A/H2-D)2Enge	IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-123749870-1	chr4	123749770	123749970	+	1000.0	f0_c57.idr	intron (NM_023423, intron 1 of 4)	CpG	429.0	NM_023423	68050.0	Mm.27903	NM_023423	ENSMUSG00000023075	Akirin1	6330407G11Rik	akirin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129596103-4	chr2	129595994	129596194	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355160, intron 1 of 7)	intron (NM_001355160, intron 1 of 7)	632.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	6.39078920766403	6.47647059384856	6.27493689395424	6.1869961804521	5.47077097810487	6.27776651539242	5.34354859638455	6.03769756408795	-0.55607410392333	0.0267770674617762	0.219189809303791
Merged-chr19-12445197-4	chr19	12445090	12445290	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-15589.0	NM_010821	17476.0	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-128948773-2	chr4	128948673	128948873	+	694.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301841, intron 5 of 8)	intron (NM_001301841, intron 5 of 8)	13682.0	NM_172875	242669.0	Mm.215814	NM_172875	ENSMUSG00000028789	Azin2	4933429I20Rik|Adc|Azi2|B930082O19|ODC-p|Odcp	antizyme inhibitor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118667625-3	chr9	118667511	118667711	+	872.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 8 of 27)	intron (NM_133721, intron 8 of 27)	-44081.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-73163403-2	chr6	73163303	73163503	+	823.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164669, intron 17 of 76)	intron (NM_001164669, intron 17 of 76)	58228.0	NM_001164669	330355.0	Mm.333166	NM_001164669	ENSMUSG00000052861	Dnah6	9830168K20|A730004I20Rik|Dnahc6|mKIAA1697|mdhc6	dynein, axonemal, heavy chain 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-86893218-4	chr12	86893112	86893312	+	882.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8398.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-49364046-4	chr2	49364007	49364207	+	931.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1-int|LTR|ERVL-MaLR	-87379.0	NM_172663	227867.0	Mm.29167	NM_172663	ENSMUSG00000069495	Epc2	5830499L14|D2Ertd694e	enhancer of polycomb homolog 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-30522990-2	chr14	30522890	30523090	+	786.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_133761, intron 9 of 9)	intron (NM_133761, intron 9 of 9)	-26141.0	NM_009388	21881.0	Mm.290692	NM_009388	ENSMUSG00000021957	Tkt	p68	transketolase	protein-coding	-0.458345233969312	-0.584087704335511	-0.042877664968212	-0.589817842737709	-0.454624274568541	-0.394847968916756	-0.58661463311966	-0.589383523373253	-1.34339380955181	0.595656148460895	1
Merged-chr9-115708653-1	chr9	115708553	115708753	+	583.0	f1_c57bl6.idr	Intergenic	MER89|LTR|ERV1	-200802.0	NM_028638	73748.0	Mm.485018	NM_028638	ENSMUSG00000056880	Gadl1	1110027M19Rik|ADC|CSADC	glutamate decarboxylase-like 1	protein-coding	-0.228876761955079	0.110255621464553	-0.221034755604502	0.167912463365162	-0.0948058639310511	-0.216304075232077	-0.220185962636591	0.173373756791182	-0.457449692026826	0.841975047027916	1
Merged-chr4-129882218-2	chr4	129882118	129882318	+	573.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24008.0	NR_045190	319894.0	Mm.59196	NR_045190	ENSMUSG00000086369	E330017L17Rik	-	RIKEN cDNA E330017L17 gene	ncRNA	-2.18308165884198	-2.15547475440471	-2.16382331017202	-2.1706810624505	-2.18114370519566	-2.15366558754311	-2.03057248461154	-2.16945352807143	0.759018020146679	0.829933115115583	1
Merged-chr2-5577818-3	chr2	5577696	5577896	+	880.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290374, intron 1 of 9)	intron (NM_001290374, intron 1 of 9)	98250.0	NM_001290376	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6972493-2	chr19	6972393	6972593	+	580.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2555.0	NM_008889	18938.0	Mm.140	NM_008889	ENSMUSG00000056612	Ppp1r14b	AOM172|PHI-1|PLCB3N|Png	protein phosphatase 1, regulatory (inhibitor) subunit 14B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-5028540-2	chr7	5028440	5028640	+	555.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033383, intron 1 of 2)	intron (NM_001033383, intron 1 of 2)	8164.0	NM_001033383	319748.0	Mm.86607	NM_001033383	ENSMUSG00000074405	Zfp865	6430526N21Rik|Znf865	zinc finger protein 865	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-47830557-4	chr6	47830456	47830656	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177882)	promoter-TSS (NM_177882)	-51.0	NM_177882	330301.0	Mm.128149	NM_177882	ENSMUSG00000051499	Zfp786	A730012O14Rik|Znf786	zinc finger protein 786	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-31081812-2	chr2	31081712	31081912	+	682.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355105, intron 6 of 15)	B3|SINE|B2	14688.0	NM_001177650	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-119601486-4	chr13	119601372	119601572	+	904.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177666, intron 2 of 3)	B1F1|SINE|Alu	-22347.0	NM_020279	56838.0	Mm.143745	NM_020279	ENSMUSG00000074715	Ccl28	CCK1|MEC|Scya28	chemokine (C-C motif) ligand 28	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-80191816-3	chr1	80191702	80191902	+	791.483337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16_Mm|LTR|ERVK	22142.0	NM_173425	241128.0	Mm.145511	NM_173425	ENSMUSG00000043230	Fam124b	A830043J08Rik	family with sequence similarity 124, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-138174304-3	chr1	138174211	138174411	+	780.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001268286, intron 2 of 28)	intron (NM_001268286, intron 2 of 28)	815.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-88859979-2	chr15	88859879	88860079	+	798.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2215.0	NM_145478	223775.0	Mm.400129	NM_145478	ENSMUSG00000035828	Pim3	BC026639|Kid1	proviral integration site 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-55354206-4	chr3	55354102	55354302	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357475, intron 3 of 16)	intron (NM_001357475, intron 3 of 16)	-107526.0	NM_001195539	13175.0	Mm.393242	NM_019978	ENSMUSG00000027797	Dclk1	1700113D08Rik|2810480F11Rik|AI836758|Click-I|Cpg16|Dcamkl1|Dcl|Dclk|mKIAA0369	doublecortin-like kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-95699604-2	chr16	95699504	95699704	+	660.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2803.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-70243299-4	chr10	70243189	70243389	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1987.0	NM_025807	66859.0	Mm.19325	NM_025807	ENSMUSG00000037762	Slc16a9	1200003C15Rik|4930425B13Rik|AI552636	solute carrier family 16 (monocarboxylic acid transporters), member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30548040-2	chr2	30547940	30548140	+	583.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47004.0	NM_030137	78617.0	Mm.40413	NM_030137	ENSMUSG00000047363	Cstad	9530039B02Rik	CSA-conditional, T cell activation-dependent protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-25056678-4	chr8	25056613	25056813	+	871.104126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031257, intron 9 of 11)	intron (NM_031257, intron 9 of 11)	-17751.0	NM_001081187	330723.0	Mm.334452	NM_001081187	ENSMUSG00000037406	Htra4	B430206E18Rik	HtrA serine peptidase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-140621655-2	chr6	140621555	140621755	+	795.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1008.0	NM_178803	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30062638-7	chr2	30062557	30062757	+	974.5714109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023871, intron 1 of 7)	intron (NM_023871, intron 1 of 7)	661.0	NM_023871	56086.0	Mm.326055	NM_023871	ENSMUSG00000054766	Set	2610030F17Rik|5730420M11Rik|AA407739|I-2PP2A|StF-IT-1|TAF-I	SET nuclear oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129182884-4	chr2	129182798	129182998	+	888.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2225.0	NR_045264	100048701.0	Mm.428544	NR_045264	ENSMUSG00000084826	AI847159	-	expressed sequence AI847159	ncRNA	3.75605574326165	3.93481479133937	3.66821062475756	3.32394173013462	3.83742413652211	2.981459615053	4.02350477024941	3.14645955954741	-0.160556478281333	0.764305759671851	0.998431161219273
Merged-chr1-181172591-2	chr1	181172491	181172691	+	553.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_145514)	TTS (NM_145514)	21660.0	NM_030131	98417.0	Mm.38229	NM_030131	ENSMUSG00000062169	Cnih4	AI647760|AW050376|CNIH-4|D530030D03Rik|E430023H19Rik|HSPC163	cornichon family AMPA receptor auxiliary protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-75839323-2	chr14	75839223	75839423	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	5641.0	NR_045294	100043189.0	Mm.426329	NR_045294		Gm4285	-	predicted gene 4285	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-185187502-2	chr1	185187394	185187594	+	848.166626	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-16674.0	NM_001163754	98732.0	Mm.275841	NM_172649	ENSMUSG00000039318	Rab3gap2	1110059F07Rik|2010002H18Rik|5830469C09|AI851069|AW743433|RAB3-GAP150|mKIAA0839	RAB3 GTPase activating protein subunit 2	protein-coding	1.90134413798775	2.6425866880587	1.73012546296478	1.47043458190122	1.17118080109157	2.31221002330721	2.97543626500923	2.74011000008465	0.988785898063737	0.321386102008886	0.823903365381149
Merged-chr6-125410670-4	chr6	125410583	125410783	+	930.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30179.0	NM_198604	213522.0	Mm.333396	NM_198604	ENSMUSG00000038167	Plekhg6	BC026778|Gm155	pleckstrin homology domain containing, family G (with RhoGef domain) member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-25831456-2	chr17	25831356	25831556	+	625.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_037243)	promoter-TSS (NR_037243)	-28.0	NR_037243	100526479.0		NR_037243	ENSMUSG00000093076	Mir3082	mir-3082|mmu-mir-3082	microRNA 3082	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-62847087-4	chr16	62846986	62847186	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026577)	promoter-TSS (NM_026577)	-46.0	NM_026577	68146.0	Mm.96833	NM_026577	ENSMUSG00000022911	Arl13b	A530097K21Rik|A930014M17Rik|Arl2l1|C530009C10Rik|hnn	ADP-ribosylation factor-like 13B	protein-coding	6.12721186792331	6.34434264728364	6.41200830786149	6.14432458870203	6.10806750616304	6.0954362453136	6.26848405096377	5.6379861476174	-0.234296583896407	0.300331577371153	0.801938783078432
Merged-chr1-67044146-3	chr1	67044049	67044249	+	814.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5277.0	NM_021295	14768.0	Mm.20522	NM_021295	ENSMUSG00000026000	Lancl1	AW124738|Gpr69|Gpr69a|p40	LanC (bacterial lantibiotic synthetase component C)-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-65613786-8	chr17	65613674	65613874	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013933)	promoter-TSS (NM_013933)	-219.0	NM_013933	30960.0	Mm.266767	NM_013933	ENSMUSG00000024091	Vapa	33kDa|VAP33	vesicle-associated membrane protein, associated protein A	protein-coding	4.62118858590379	3.4197773949499	5.24382824029215	4.17410109399354	4.68936009932585	3.96617700941419	4.8864508397672	4.25186153898873	-0.0356656654009699	0.938073940373545	0.998431161219273
Merged-chr2-77946044-4	chr2	77945971	77946171	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030560, intron 1 of 20)	CpG	285.0	NM_001290740	80744.0	Mm.288151	NM_030560	ENSMUSG00000027014	Cwc22	AA684037|AI173004|AL022752|B230213M24|mKIAA1604	CWC22 spliceosome-associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-75893251-4	chr10	75893141	75893341	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358985)	promoter-TSS (NM_001358985)	-157.0	NR_152573	70377.0	Mm.275878	NM_024440	ENSMUSG00000009092	Derl3	1810006I20Rik|1810063P04Rik|IZP6|derlin-3	Der1-like domain family, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-20640926-2	chr18	20640826	20641026	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_155534, intron 1 of 2)	intron (NR_155534, intron 1 of 2)	-24324.0	NM_013697	22139.0	Mm.2108	NM_013697	ENSMUSG00000061808	Ttr	AA408768|AI787086|D17860|prealbumin	transthyretin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153163706-4	chr2	153163617	153163817	+	979.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133847, intron 1 of 17)	intron (NM_133847, intron 1 of 17)	2416.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-45458237-3	chr13	45458134	45458334	+	711.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC5|LINE|L1	-49210.0	NM_025508	66355.0	Mm.290802	NM_025508	ENSMUSG00000000253	Gmpr	2310004P21Rik|AV028449|GMPR 1	guanosine monophosphate reductase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-8100826-2	chr14	8100726	8100926	+	680.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360314, intron 1 of 19)	MIRb|SINE|MIR	2615.0	NM_001360315	218699.0	Mm.29515	NM_145458	ENSMUSG00000033885	Pxk	C230080L11Rik|D14Ertd813e|Monaka|Slob	PX domain containing serine/threonine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-82128100-6	chr10	82128055	82128255	+	948.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163064, intron 1 of 3)	CpG	142.0	NM_001163064	216177.0	Mm.482395	NM_001163064	ENSMUSG00000078435	AU041133	-	expressed sequence AU041133	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-65729788-2	chr17	65729688	65729888	+	674.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133685, intron 1 of 6)	L1MEg|LINE|L1	42964.0	NM_133685	106572.0	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-42011088-4	chr18	42010932	42011132	+	944.116699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1A|DNA|hAT-Charlie	-11983.0	NM_001033426	332309.0	Mm.240520	NM_001033426	ENSMUSG00000073574	Grxcr2	Gm851	glutaredoxin, cysteine rich 2	protein-coding	3.7098998154451	3.69801763703617	3.88073750044083	2.94901622258351	4.34170845193187	3.72509993768428	4.41046100479779	3.65099637538515	0.680742650328999	0.171994179818811	0.639937823898933
Merged-chr11-53298718-2	chr11	53298618	53298818	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008300, intron 1 of 18)	intron (NM_008300, intron 1 of 18)	1761.0	NM_008300	15525.0	Mm.239865	NM_008300	ENSMUSG00000020361	Hspa4	70kDa|AI317151|APG-2|Hsp110|Hsp70RY|mKIAA4025	heat shock protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-67225411-2	chr7	67225311	67225511	+	665.833374	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001357962)	TTS (NM_001357962)	2795.0	NM_001191051	75099.0	Mm.121691	NM_175215	ENSMUSG00000043831	Lysmd4	4930506D23Rik	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139408129-3	chr5	139408037	139408237	+	941.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177000, intron 1 of 1)	intron (NM_177000, intron 1 of 1)	1750.0	NM_177000	319772.0	Mm.440271	NM_177000	ENSMUSG00000044092	C130050O18Rik	-	RIKEN cDNA C130050O18 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165367204-3	chr2	165367114	165367314	+	728.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5095.0	NM_001005425	381405.0	Mm.296323	NM_001005425	ENSMUSG00000056824	Zfp663	Gm1008	zinc finger protein 663	protein-coding	1.51042347669651	2.71189511247911	2.94429166741682	2.44929472520434	1.70840725376565	2.25062116664907	2.17560975548889	2.35639639121797	-0.825473000685303	0.351884982093982	0.852338361069366
Merged-chr8-11637391-2	chr8	11637291	11637491	+	672.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1634.0	NM_001281974	102334.0	Mm.12459	NM_133971	ENSMUSG00000031508	Ankrd10	4833425P12Rik|AW549277	ankyrin repeat domain 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3818153-4	chr12	3818047	3818247	+	931.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271753, intron 1 of 22)	intron (NM_001271753, intron 1 of 22)	10987.0	NM_001271753	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-32197271-2	chr5	32197171	32197371	+	855.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER94|DNA|hAT-Blackjack	-35437.0	NM_030072	665270.0	Mm.160067	NM_030072	ENSMUSG00000029134	Plb1	4632413E21Rik|4930433E17Rik|4930539A06Rik|BC033606	phospholipase B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-60983323-4	chr8	60983206	60983406	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007711)	promoter-TSS (NM_007711)	5.0	NM_173873	12725.0	Mm.25263	NM_007711	ENSMUSG00000004319	Clcn3	Clc3	chloride channel, voltage-sensitive 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-78107882-2	chr9	78107782	78107982	+	650.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081490, intron 1 of 12)	intron (NM_001081490, intron 1 of 12)	774.0	NM_023605	71538.0	Mm.28584	NM_023605	ENSMUSG00000001366	Fbxo9	9030401P18Rik|AA986398	f-box protein 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124759488-4	chr6	124759408	124759608	+	975.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001302642)	TTS (NM_001302642)	-3021.0	NM_007881	13498.0	Mm.333380	NM_007881	ENSMUSG00000004263	Atn1	Atr1|Drpla|atrophin-1	atrophin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-5311928-4	chr9	5311827	5312027	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007609, intron 1 of 8)	RLTR17|LTR|ERVK	3078.0	NM_007609	12363.0	Mm.1569	NM_007609	ENSMUSG00000033538	Casp4	CASP-11|CASP-4|Casp11|Caspl|ich-3	caspase 4, apoptosis-related cysteine peptidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-69218711-4	chr17	69218694	69218894	+	808.471436	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355736, intron 3 of 21)	intron (NM_001355736, intron 3 of 21)	58412.0	NR_045428	69750.0	Mm.439063	NR_045428	ENSMUSG00000100572	2410021H03Rik	-	RIKEN cDNA 2410021H03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-84284555-1	chr15	84284455	84284655	+	569.0	f1_balb.idr	intron (NM_133167, intron 4 of 12)	intron (NM_133167, intron 4 of 12)	-40165.0	NM_022321	64099.0	Mm.251356	NM_022321	ENSMUSG00000022439	Parvg	AI413459	parvin, gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-82693023-4	chr18	82692930	82693130	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177832)	promoter-TSS (NM_177832)	-296.0	NM_177832	329002.0	Mm.34438	NM_177832	ENSMUSG00000041258	Zfp236	AI447957|Gm335	zinc finger protein 236	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-94085278-2	chr16	94085178	94085378	+	775.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011377)	promoter-TSS (NM_011377)	18.0	NM_011377	20465.0	Mm.4775	NM_011377	ENSMUSG00000062713	Sim2	bHLHe15	single-minded family bHLH transcription factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-85574778-3	chr17	85574676	85574876	+	888.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43620.0	NR_038084	100043902.0	Mm.150838	NR_015385	ENSMUSG00000093460	Six3os1	D17Mgi26|E130112H22Rik|Rncr1|Six3os	SIX homeobox 3, opposite strand 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91361439-4	chr2	91361348	91361548	+	983.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175123, intron 3 of 8)	intron (NM_175123, intron 3 of 8)	83266.0	NM_001311144	228356.0	Mm.386861	NM_175123	ENSMUSG00000040591	1110051M20Rik	AI586322	RIKEN cDNA 1110051M20 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-108135931-2	chr13	108135845	108136045	+	760.875	f0_balb.idr|f0_c57.idr	intron (NM_001360140, intron 1 of 4)	intron (NM_001360140, intron 1 of 4)	22680.0	NM_001360140	75597.0	Mm.276040	NM_001127346	ENSMUSG00000068184	Ndufaf2	1810058I14Rik|C86051|Ndufa12l|mimitin	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 2	protein-coding	1.26603509986739	1.07866136873169	0.706987784742962	1.01264187819609	0.840632777925351	1.08691997653156	1.04987244597668	1.35446443360734	0.294293130388743	0.831193852935822	0.998431161219273
Merged-chr10-8777699-4	chr10	8777608	8777808	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 8 of 19)	intron (NM_175155, intron 8 of 19)	108362.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-5949765-4	chr11	5949693	5949893	+	992.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010292, exon 1 of 10)	5' UTR (NM_010292, exon 1 of 10)	288.0	NM_010292	103988.0	Mm.220358	NM_010292	ENSMUSG00000041798	Gck	GLK|Gk|Gls006|HK4|HKIV|HXKP|Hlb62|MODY2	glucokinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118613344-2	chr9	118613244	118613444	+	790.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 1 of 27)	intron (NM_133721, intron 1 of 27)	6635.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-9732209-4	chr18	9732109	9732309	+	926.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130449, intron 2 of 9)	intron (NM_130449, intron 2 of 9)	24561.0	NM_130449	140792.0	Mm.218571	NM_130449	ENSMUSG00000036103	Colec12	CL-P1|SRCL|Scara4	collectin sub-family member 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-21275866-4	chr19	21275773	21275973	+	795.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009551, intron 1 of 5)	intron (NM_009551, intron 1 of 5)	3595.0	NM_009551	22682.0	Mm.292405	NM_009551	ENSMUSG00000024750	Zfand5	2310057A04Rik|5830475F03Rik|AA415485|Za20d2|Zfp216	zinc finger, AN1-type domain 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-13655471-2	chr9	13655371	13655571	+	586.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013813, intron 1 of 3)	intron (NM_001013813, intron 1 of 3)	-6989.0	NM_173776	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-99358186-4	chr5	99358083	99358283	+	984.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-105256.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118251347-2	chr11	118251247	118251447	+	740.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-2755.0	NM_011180	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-102565491-4	chr7	102565390	102565590	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009277)	promoter-TSS (NM_009277)	-8.0	NM_009277	20821.0	Mm.321227	NM_009277	ENSMUSG00000030966	Trim21	Ro52|Ssa1	tripartite motif-containing 21	protein-coding	4.22299242218998	4.87518856083215	4.55293427911647	4.38726789186359	4.65230140425258	4.20405479550363	4.5370734473036	3.79543215175077	-0.234204495455248	0.560562200331836	0.960350977191929
Merged-chr2-167944943-3	chr2	167944846	167945046	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011201, intron 1 of 8)	intron (NM_011201, intron 1 of 8)	12619.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-120854864-4	chr4	120854764	120854964	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_182929)	promoter-TSS (NM_182929)	65.0	NM_182929	242662.0	Mm.192502	NM_182929	ENSMUSG00000032890	Rims3	A730060M23Rik|Nim3|Rim3|mKIAA0237	regulating synaptic membrane exocytosis 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-122028505-4	chr2	122028405	122028605	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144545)	promoter-TSS (NM_144545)	-75.0	NM_144545	78655.0	Mm.458184	NM_144545	ENSMUSG00000027236	Eif3j1	1810016I04Rik|2700079K05Rik|AA409117|AA409446|C78575|Eif3j|Eif3j-1|Eif3j-2|Eif3j2|Eif3s1|eIF-3-alpha-A|eIF-3-alpha-B|eIF3-alpha|eIF3-p35|eIF3j-A|eIF3j-B	eukaryotic translation initiation factor 3, subunit J1	protein-coding	5.68065093607617	5.42262803993761	5.98036476389996	5.22819728487822	5.49581383361629	5.31419640331282	5.97690143088405	5.40004123071857	-0.0410768291596707	0.885502849163436	0.998431161219273
Merged-chr5-105568783-2	chr5	105568683	105568883	+	799.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133897, intron 2 of 3)	intron (NM_133897, intron 2 of 3)	49312.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	-1.05601938687352	-1.03616289853851	-1.04761128607814	-1.05268737851486	-0.486446083004129	-1.03368198520059	-1.04501962208068	-0.885296780652757	2.81377842780703	0.373656442218667	1
Merged-chr10-52234061-1	chr10	52233961	52234161	+	714.0	f0_balb.idr	intron (NM_001347444, intron 1 of 9)	CpG	442.0	NM_025705	66686.0	Mm.62982	NM_025705	ENSMUSG00000019891	Dcbld1	4631413K11Rik	discoidin, CUB and LCCL domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-134703359-5	chr4	134703262	134703462	+	894.773315	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_207237, exon 1 of 12)	exon (NM_207237, exon 1 of 12)	928.0	NM_207237	230815.0	Mm.18905	NM_207237	ENSMUSG00000037306	Man1c1	AI593348	mannosidase, alpha, class 1C, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-103513255-4	chr14	103513149	103513349	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022886)	promoter-TSS (NM_022886)	-92.0	NM_022886	64929.0	Mm.244003	NM_022886	ENSMUSG00000022123	Scel	9230114I02Rik	sciellin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28812698-2	chr7	28812598	28812798	+	638.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177301, intron 1 of 12)	intron (NM_177301, intron 1 of 12)	1808.0	NM_177301	15388.0	Mm.9043	NM_177301	ENSMUSG00000015165	Hnrnpl	C79783|D830027H13Rik|Hnrpl	heterogeneous nuclear ribonucleoprotein L	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-65243899-2	chr13	65243799	65243999	+	600.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34955.0	NM_178364	170936.0	Mm.151546	NM_178364	ENSMUSG00000021514	Zfp369	B930030B22Rik|D230020H11Rik|NRIF2	zinc finger protein 369	protein-coding	0.694060176923771	1.89615147516429	0.733228665950877	1.65539194680152	0.69781290069739	1.91356094908855	1.49192726605437	0.721360880495168	-0.133419408880057	0.930429067347416	0.998431161219273
Merged-chr1-165853888-2	chr1	165853788	165853988	+	695.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113391, intron 1 of 7)	intron (NM_001113391, intron 1 of 7)	65207.0	NM_001113392	12503.0	Mm.217308	NM_031162	ENSMUSG00000005763	Cd247	4930549J05Rik|A430104F18Rik|AW552088|Cd3|Cd3-eta|Cd3-zeta|Cd3h|Cd3z|Cd3zeta|T3z|Tcrk|Tcrz	CD247 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-48981594-1	chr9	48981494	48981694	+	691.0	f1_c57bl6.idr	Intergenic	Intergenic	-3791.0	NM_001359739	235323.0	Mm.21630	NM_175482	ENSMUSG00000032267	Usp28	9830148O20Rik|AU022237|mKIAA1515	ubiquitin specific peptidase 28	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-37002688-3	chr17	37002622	37002822	+	647.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033137)	promoter-TSS (NR_033137)	197.0	NM_001013745	22715.0	Mm.305561	NM_009559	ENSMUSG00000036036	Zfp57	G19|Zfp-57	zinc finger protein 57	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123427766-4	chr5	123427644	123427844	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133917, intron 1 of 16)	intron (NM_133917, intron 1 of 16)	32946.0	NM_177582	208104.0	Mm.83277	NM_133917	ENSMUSG00000038342	Mlxip	AW228700|Mir|bHLHe36	MLX interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-114690341-4	chr9	114690237	114690437	+	955.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146229, intron 2 of 12)	intron (NM_146229, intron 2 of 12)	1506.0	NM_146229	235661.0	Mm.128627	NM_146229	ENSMUSG00000032435	Dync1li1	1110053F02Rik|Dnclic1|LIC-1	dynein cytoplasmic 1 light intermediate chain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-52296966-4	chr2	52296843	52297043	+	963.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010889, intron 27 of 156)	intron (NM_010889, intron 27 of 156)	5941.0	NR_040620	78049.0	Mm.243883	NR_040620		4930573O16Rik	-	RIKEN cDNA 4930573O16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-54925974-2	chr6	54925874	54926074	+	600.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001171007, intron 11 of 11)	intron (NM_001171007, intron 11 of 11)	45687.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-92185273-10	chr2	92185149	92185349	+	944.7666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001109691)	promoter-TSS (NM_001109691)	-234.0	NM_001109691	192285.0	Mm.330408	NM_138755	ENSMUSG00000058318	Phf21a	80kDa|Bhc|Bhc80|D030065N23Rik|PFTF1	PHD finger protein 21A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-82906713-2	chr15	82906613	82906813	+	879.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_045068)	TTS (NR_045068)	5421.0	NM_013836	21411.0	Mm.252156	NM_013836	ENSMUSG00000041852	Tcf20	2810438H08Rik|SPBP|mKIAA0292	transcription factor 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-100091372-1	chr9	100091272	100091472	+	831.0	f1_balb.idr	Intergenic	Intergenic	69072.0	NR_040763	108970.0	Mm.390215	NR_040763	ENSMUSG00000101584	4930519F24Rik	-	RIKEN cDNA 4930519F24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-67841057-1	chr9	67840957	67841157	+	695.333313	f1_balb.idr	intron (NM_177184, intron 1 of 84)	intron (NM_177184, intron 1 of 84)	661.0	NM_177184	320528.0	Mm.241454	NM_177184	ENSMUSG00000035284	Vps13c	AI552542|AV026040|C230055H22Rik|W51662|chorein	vacuolar protein sorting 13C	protein-coding	1.21177651627278	1.07643476129316	1.31384121070391	1.02217619508468	2.3990033830293	1.96135013355852	2.54115906115024	2.73548281869363	4.30391770992789	0.000756144037854417	0.0154815975532036
Merged-chr9-123450391-2	chr9	123450291	123450491	+	584.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_153168, intron 14 of 20)	intron (NM_153168, intron 14 of 20)	-28310.0	NM_013860	29806.0	Mm.10987	NM_013860	ENSMUSG00000025239	Limd1	AW822033|D9Ertd192e	LIM domains containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99365134-3	chr15	99365033	99365233	+	902.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310622, intron 1 of 25)	intron (NM_001310622, intron 1 of 25)	5349.0	NM_001310623	22379.0	Mm.29043	NM_011711	ENSMUSG00000023008	Fmnl3	2700073B04Rik|FBP11|Wbp3|mKIAA2014	formin-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-104523670-4	chr14	104523579	104523779	+	978.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1013.0	NM_026047	72486.0	Mm.291811	NM_026047	ENSMUSG00000022120	Rnf219	2610206B13Rik|2810449K13Rik|AI451544	ring finger protein 219	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-11016721-4	chr4	11016638	11016838	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9119.0	NM_175175	71801.0	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-80140102-1	chr18	80140002	80140202	+	617.0	f1_balb.idr	intron (NM_175028, intron 2 of 3)	intron (NM_175028, intron 2 of 3)	11380.0	NM_175028	240442.0	Mm.26594	NM_175028	ENSMUSG00000053950	Adnp2	8430420L05Rik|BC024969|Kiaa0863|Zfp508|mKIAA0863	ADNP homeobox 2	protein-coding	1.85799840176127	0.909981154879263	1.10529047424151	0.882968552489725	1.87525874284639	1.49440818219359	1.29015159740607	1.52089594854467	1.00940228852384	0.440248724631103	0.909387391506812
Merged-chr4-97885740-3	chr4	97885646	97885846	+	822.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010905, intron 2 of 10)	intron (NM_010905, intron 2 of 10)	108120.0	NM_010905	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6997793-2	chr19	6997693	6997893	+	736.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_027351, intron 2 of 5)	intron (NR_027351, intron 2 of 5)	1662.0	NR_027351	107328.0	Mm.391161	NM_153597	ENSMUSG00000047656	Trpt1	AU079016|AW045591|Tpt1|Tpt1h	tRNA phosphotransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-137414745-4	chr6	137414645	137414845	+	843.93335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011216, intron 14 of 26)	B3|SINE|B2	4024.0	NM_001164403	19277.0	Mm.186361	NM_011216	ENSMUSG00000030223	Ptpro	D28|GLEPP1|PTPBK|PTPROt|PTPU2|PTPoc|PTPphi|Ptpn15|R-PTP-O	protein tyrosine phosphatase, receptor type, O	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-100566537-1	chr5	100566437	100566637	+	663.0	f1_balb.idr	intron (NM_139198, intron 1 of 4)	ID_B1|SINE|B4	5668.0	NM_139198	231507.0	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	-0.849540347160918	-0.83791883826935	-0.842874229298225	-0.845379854937529	-0.567718301155892	-0.197178340663439	-0.842158039317344	-0.844942093372508	3.16182143622335	0.281564155371618	1
Merged-chr16-76230279-2	chr16	76230179	76230379	+	674.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A|LTR|ERVL-MaLR	107666.0	NR_040575	78215.0	Mm.243885	NR_040575		4930578N18Rik	-	RIKEN cDNA 4930578N18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52638265-2	chr13	52638165	52638365	+	989.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_011518, intron 10 of 13)	intron (NM_011518, intron 10 of 13)	41383.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-39650695-2	chr8	39650599	39650799	+	581.25	f0_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-8021.0	NM_001113326	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-79512103-4	chr2	79512008	79512208	+	848.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55472.0	NM_010894	18012.0	Mm.4636	NM_010894	ENSMUSG00000034701	Neurod1	BETA2|BHF-1|Nd1|Neurod|bHLHa3	neurogenic differentiation 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-18821581-4	chr15	18821479	18821679	+	943.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009865, intron 1 of 11)	intron (NM_009865, intron 1 of 11)	1250.0	NM_009865	320873.0	Mm.117794	NM_009865	ENSMUSG00000022321	Cdh10	A830016G23Rik|C030003B10Rik|C030011H18Rik	cadherin 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10869747-4	chr19	10869600	10869800	+	990.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133804)	promoter-TSS (NM_133804)	79.0	NM_133804	98170.0	Mm.490254	NM_133804	ENSMUSG00000024736	Tmem132a	6720481D13Rik|Hspa5bp1|Orai1|R74613	transmembrane protein 132A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-99066181-3	chr11	99066086	99066286	+	950.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172564, exon 13 of 13)	3' UTR (NM_172564, exon 13 of 13)	23120.0	NM_172564	217169.0	Mm.262067	NM_172564	ENSMUSG00000017607	Tns4	9930017A07Rik|AA589547|AU016405|Cten	tensin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-93688470-4	chr10	93688390	93688590	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021320, intron 3 of 9)	intron (NM_021320, intron 3 of 9)	-5168.0	NR_038017	100504069.0	Mm.391412	NR_038017	ENSMUSG00000085723	Gm15915	-	predicted gene 15915	ncRNA	5.20581404738795	5.98206409965482	5.94651126224813	4.97660634805214	5.72413541251954	5.14054568432697	4.80447600057832	5.83673402316504	-0.162055627430747	0.628295771531287	0.980958768686087
Merged-chr14-47087452-3	chr14	47087360	47087560	+	787.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037221, intron 9 of 12)	MIRb|SINE|MIR	18483.0	NM_001310544	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	1.69226231471282	1.71899924915493	1.83717928124165	1.93014947458684	1.14120821643707	2.55362325303964	2.85452225926062	2.06968517284813	1.2754154998356	0.205355422304173	0.692768056351573
Merged-chr12-85534456-6	chr12	85534355	85534555	+	822.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60565.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81477782-2	chr10	81477682	81477882	+	652.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_176954, intron 1 of 11)	intron (NM_176954, intron 1 of 11)	-2938.0	NM_001311126	319586.0	Mm.152689	NM_176954	ENSMUSG00000034818	Celf5	4930565A21Rik|Brunol5	CUGBP, Elav-like family member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-37045603-3	chr17	37045506	37045706	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019439)	promoter-TSS (NM_019439)	-360.0	NM_019439	54393.0	Mm.32191	NM_019439	ENSMUSG00000024462	Gabbr1	GABAB1|GABAbR1|bM573K1.1	gamma-aminobutyric acid (GABA) B receptor, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19710700-2	chr7	19710600	19710800	+	666.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001109748, intron 5 of 8)	intron (NM_001109748, intron 5 of 8)	4729.0	NM_001109748	53333.0	Mm.61682	NM_016871	ENSMUSG00000002984	Tomm40	AW539759|Mom35|Tom40	translocase of outer mitochondrial membrane 40	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-41302778-1	chr10	41302678	41302878	+	1000.0	f0_c57.idr	intron (NM_133999, intron 1 of 22)	intron (NM_133999, intron 1 of 22)	463.0	NM_133999	103199.0	Mm.277242	NM_133999	ENSMUSG00000038417	Fig4	A530089I17Rik|AI326867|Sac3	FIG4 phosphoinositide 5-phosphatase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171268421-3	chr1	171268334	171268534	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6A|LTR|ERVK	-1894.0	NM_020579	57370.0	Mm.274011	NM_020579	ENSMUSG00000052423	B4galt3	9530061M23Rik|AA104562|AW125175|ESTM26|ESTM6|R74981	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126826632-2	chr7	126826532	126826732	+	987.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001146347, intron 1 of 3)	intron (NM_001146347, intron 1 of 3)	1979.0	NM_001146347	68952.0	Mm.440393	NM_026884	ENSMUSG00000058966	Fam57b	1500016O10Rik|A330104J06Rik|AI413816|AW060769	family with sequence similarity 57, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-173414046-1	chr1	173413946	173414146	+	600.0	f1_c57bl6.idr	Intergenic	Intergenic	-6558.0	NM_001013779	383619.0	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	2.50279596382514	2.80177618245154	1.66074181085623	2.35476968109388	2.14939732137187	2.26491814199846	2.19251777560773	2.36657802517292	-0.360479308921661	0.670380666870166	0.99359666617512
Merged-chr1-183917164-4	chr1	183917073	183917273	+	845.133301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	116825.0	NM_028516	73363.0	Mm.50115	NM_028516	ENSMUSG00000044854	1700056E22Rik	-	RIKEN cDNA 1700056E22 gene	protein-coding	4.23331096658769	2.15923426799022	2.8782315581573	3.8721318199914	2.5397678395892	1.61621364114315	3.21720999511054	3.2020542768521	-1.18827433963845	0.121993627281686	0.547245267450283
Merged-chr4-149549468-3	chr4	149549349	149549549	+	834.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023465, intron 4 of 4)	intron (NM_023465, intron 4 of 4)	4332.0	NM_001141930	67087.0	Mm.299735	NM_023465	ENSMUSG00000028988	Ctnnbip1	1110008O09Rik|2310001I19Rik|AW457332|Catnbip1|Icat	catenin beta interacting protein 1	protein-coding	2.32428331691979	1.923854522418	1.69814432100198	2.52729885027273	1.9823293647333	2.08803867783262	1.27548916472329	2.19016121819632	-0.60135223575413	0.539547199487921	0.954403851908463
Merged-chr4-126557480-2	chr4	126557380	126557580	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175554, intron 1 of 25)	intron (NM_175554, intron 1 of 25)	500.0	NM_175554	269582.0	Mm.243962	NM_175554	ENSMUSG00000042489	Clspn	B130025E01|C85083|E130314M08Rik	claspin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-18687951-4	chr2	18687859	18688059	+	853.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10941.0	NM_007552	12151.0	Mm.289584	NM_007552	ENSMUSG00000026739	Bmi1	AW546694|Bmi-1|Pcgf4	Bmi1 polycomb ring finger oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-149777187-3	chr4	149777024	149777224	+	824.6348879999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-2857.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-79705159-2	chr11	79705059	79705259	+	956.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6810.0	NR_029579	387188.0		NR_029579	ENSMUSG00000065395	Mir193a	Mir193|Mirn193|mir-193a|mmu-mir-193|mmu-mir-193a	microRNA 193a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-27442273-1	chr4	27442173	27442373	+	581.0	f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	-736824.0	NR_040656	75360.0	Mm.67233	NR_040656	ENSMUSG00000086257	4930548K13Rik	-	RIKEN cDNA 4930548K13 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-105577481-2	chr11	105577381	105577581	+	624.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-12505.0	NM_181071	77097.0	Mm.22501	NM_175492	ENSMUSG00000053580	Tanc2	3526402J09Rik|5730590C14Rik	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45920703-4	chr7	45920635	45920835	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001146346, exon 1 of 5)	5' UTR (NM_001146346, exon 1 of 5)	114.0	NM_001146346	13732.0	Mm.20829	NM_010129	ENSMUSG00000040212	Emp3	H-4|H4|HNMP-1|MI-35|Ymp	epithelial membrane protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-109062610-4	chr3	109062507	109062707	+	982.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17892.0	NM_029054	74686.0	Mm.307948	NM_029054	ENSMUSG00000027880	Slc25a54	4930443G12Rik|SCaMC-1like	solute carrier family 25, member 54	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5646609-1	chr19	5646509	5646709	+	785.0	f1_c57bl6.idr	intron (NM_009045, intron 10 of 10)	intron (NM_009045, intron 10 of 10)	9119.0	NM_009045	19697.0	Mm.249966	NM_009045	ENSMUSG00000024927	Rela	p65	v-rel reticuloendotheliosis viral oncogene homolog A (avian)	protein-coding	-0.872916097538603	-0.858076750212072	0.212271930224195	-0.866682797913291	-0.871978848638189	-0.856861994422903	-0.861959313721536	-0.866035833892092	-3.81964142728853	0.171121984527918	1
Merged-chr16-94720638-1	chr16	94720538	94720738	+	648.0	f0_balb.idr	Intergenic	Lx7|LINE|L1	109219.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-45216325-1	chr19	45216225	45216425	+	641.0	f1_c57bl6.idr	Intergenic	Intergenic	18911.0	NM_010691	16814.0	Mm.116815	NM_010691	ENSMUSG00000025216	Lbx1	Lbx1h	ladybird homeobox 1	protein-coding	2.23032500002195	3.31925660550829	1.57314292258913	2.23593658927151	2.35939685578005	3.27797743444819	2.01216136048981	1.2646468231396	-0.127220948268148	0.894889280766449	0.998431161219273
Merged-chr13-58486803-2	chr13	58486703	58486903	+	986.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-83460.0	NM_001301341	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-100557215-4	chr5	100557120	100557320	+	952.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139198, intron 3 of 4)	intron (NM_139198, intron 3 of 4)	14985.0	NM_139198	231507.0	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	3.96578870253446	4.01686858111697	4.01053341577548	4.53022651963537	3.07116248360621	1.8576539768952	3.70255359325841	3.58850705887054	-1.33300779276544	0.018746292289567	0.171780561270538
Merged-chr9-83557468-4	chr9	83557321	83557521	+	811.37915	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172507, intron 1 of 3)	intron (NM_172507, intron 1 of 3)	9083.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	0.789527336491266	1.45293513853161	1.39109974775695	0.640339933838096	0.795082953728601	0.662701870332866	1.40491951262369	0.988567477622474	-0.536162609852137	0.717234980497471	0.998431161219273
Merged-chr7-27161203-2	chr7	27161103	27161303	+	686.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357767, intron 1 of 4)	intron (NM_001357767, intron 1 of 4)	4525.0	NM_001357767	112406.0	Mm.29978	NM_053208	ENSMUSG00000058709	Egln2	0610011A13Rik|C85656|Hif-p4h-1|Ier4|Phd1|SM-20	egl-9 family hypoxia-inducible factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44508498-2	chr9	44508398	44508598	+	542.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357490, intron 7 of 7)	intron (NM_001357490, intron 7 of 7)	9362.0	NM_030256	80288.0	Mm.370270	NM_030256	ENSMUSG00000063382	Bcl9l	B9L|BC003321|BCL9-2|DLNB11	B cell CLL/lymphoma 9-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-60412532-2	chr11	60412432	60412632	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145427, intron 1 of 7)	B1_Mur1|SINE|Alu	4567.0	NM_145427	246782.0	Mm.41651	NM_145427	ENSMUSG00000042709	Atpaf2	ATP12|ATP12p	ATP synthase mitochondrial F1 complex assembly factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55703683-3	chr19	55703584	55703784	+	804.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1480.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-90353230-2	chr7	90353130	90353330	+	574.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001040085, intron 2 of 18)	intron (NM_001040085, intron 2 of 18)	-33751.0	NM_001040087	83671.0	Mm.26751	NM_031394	ENSMUSG00000030616	Sytl2	AI266830|Slp2|mKIAA1597	synaptotagmin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-81148023-4	chr13	81147948	81148148	+	891.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 87 of 89)	intron (NM_054053, intron 87 of 89)	183974.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-32559042-4	chr11	32558942	32559142	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 2 of 18)	intron (NM_009288, intron 2 of 18)	25776.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-75590046-5	chr10	75589991	75590191	+	922.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359425, intron 1 of 7)	intron (NM_001359425, intron 1 of 7)	710.0	NR_153110	23887.0	Mm.257927	NM_011820	ENSMUSG00000006344	Ggt5	AI551243|GGL|GGT-REL|Ggtla1	gamma-glutamyltransferase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-78356154-4	chr10	78356069	78356269	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4469.0	NM_053014	28169.0	Mm.141230	NM_053014	ENSMUSG00000001211	Agpat3	AW061257|AW493985|D10Jhu12e|lpaat3	1-acylglycerol-3-phosphate O-acyltransferase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-162574301-4	chr1	162574181	162574381	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016796, intron 1 of 7)	intron (NM_016796, intron 1 of 7)	3453.0	NM_016796	53330.0	Mm.10699	NM_016796	ENSMUSG00000026696	Vamp4	D1Ertd147e|Vamp-4	vesicle-associated membrane protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-145794861-2	chr6	145794761	145794961	+	624.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13522.0	NM_027760	71323.0	Mm.158669	NM_027760	ENSMUSG00000030259	Rassf8	5133400D11Rik|AA815821|AW123240|Hoj1|mHoj-1	Ras association (RalGDS/AF-6) domain family (N-terminal) member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-17793049-2	chr12	17792949	17793149	+	613.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC-int|LTR|ERVL-MaLR	102240.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-8739042-1	chr10	8738942	8739142	+	586.0	f1_c57bl6.idr	intron (NM_175155, intron 16 of 19)	intron (NM_175155, intron 16 of 19)	147028.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0.624383815390764	0.755427298669211	0.27737093827861	0.563500464927638	0.526422467341529	0.764819361957506	0.278685864255212	0.273578435526127	-0.584873644996765	0.74764488537297	1
Merged-chr13-54799848-2	chr13	54799748	54799948	+	760.916626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10443.0	NM_028841	74257.0	Mm.32883	NM_028841	ENSMUSG00000025875	Tspan17	2210021G21Rik|AI047581|Fbxo23|Tm4sf17	tetraspanin 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-109058413-8	chr9	109058387	109058587	+	974.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_026381)	TTS (NM_026381)	764.0	NM_001012236	22040.0	Mm.439964	NM_011637	ENSMUSG00000049734	Trex1	AU041952	three prime repair exonuclease 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-25042149-2	chr8	25042096	25042296	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_031257, exon 12 of 12)	3' UTR (NM_031257, exon 12 of 12)	-3234.0	NM_001081187	330723.0	Mm.334452	NM_001081187	ENSMUSG00000037406	Htra4	B430206E18Rik	HtrA serine peptidase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-94901374-2	chr8	94901274	94901474	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16724.0	NM_001033533	234582.0	Mm.277871	NM_001033533	ENSMUSG00000063605	Ccdc102a	BC027663|Gm586	coiled-coil domain containing 102A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-6489604-2	chr11	6489504	6489704	+	884.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13528.0	NM_011221	19291.0	Mm.296150	NM_011221	ENSMUSG00000094483	Purb	2310015K15Rik|AA114818|Cager-2|D11Bwg0414e	purine rich element binding protein B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-96328102-2	chr10	96328002	96328202	+	683.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER2|LTR|ERV1	101895.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-93981432-2	chr6	93981332	93981532	+	586.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001029850, intron 1 of 23)	intron (NM_001029850, intron 1 of 23)	-67742.0	NM_001083320	14924.0	Mm.217216	NM_010367	ENSMUSG00000045095	Magi1	AIP3|BAP1|Baiap1|Gukmi1|MAGI1c|Magi-1|TNRC19|WWP3|mKIAA4129	membrane associated guanylate kinase, WW and PDZ domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-49929907-4	chr16	49929810	49930010	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25920.0	NR_153658	100503490.0	Mm.72499	NR_153658		Gm19723	-	predicted gene, 19723	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-10430096-4	chr3	10429984	10430184	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127191, intron 4 of 6)	intron (NM_001127191, intron 4 of 6)	10046.0	NM_029068	74718.0	Mm.440548	NM_029068	ENSMUSG00000027534	Snx16	4930522N22Rik|AI117577|AI747675	sorting nexin 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-6471838-4	chr13	6471753	6471953	+	872.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-76304.0	NM_145131	69617.0	Mm.41933	NM_145131	ENSMUSG00000021193	Pitrm1	2310012C15Rik|AA410010|MP-1|MP1|Ntup1|PreP|mKIAA1104	pitrilysin metallepetidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-37837520-3	chr3	37837427	37837627	+	709.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61286.0	NR_040559	626410.0	Mm.389417	NR_040559	ENSMUSG00000106461	Gm20755	-	predicted gene, 20755	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-13160882-4	chr8	13160775	13160975	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010684, intron 1 of 8)	intron (NM_010684, intron 1 of 8)	1714.0	NM_010684	16783.0	Mm.16716	NM_010684	ENSMUSG00000031447	Lamp1	CD107a|LGP-120|LGP-A|Lamp-1|P2B|Perk	lysosomal-associated membrane protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-29984937-4	chr13	29984846	29985046	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289920)	promoter-TSS (NM_001289920)	-555.0	NM_001359994	13557.0	Mm.268356	NM_010093	ENSMUSG00000016477	E2f3	E2F3b|E2f3a	E2F transcription factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-21549698-4	chr13	21549615	21549815	+	999.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	6305.0	NM_207572	404335.0	Mm.377341	NM_207572	ENSMUSG00000054890	Olfr1535	MOR256-36|MOR256-63|Olfr1365	olfactory receptor 1535	protein-coding	3.75007241389269	3.91869208267605	3.46666364250027	4.15294763698472	4.35485573363702	3.70605220551288	3.05418122993088	3.47346126190988	-0.140525434316705	0.787047811422871	0.998431161219273
Merged-chr16-95659709-4	chr16	95659613	95659813	+	945.008301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42694.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-55623611-4	chr16	55623500	55623700	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	128869.0	NR_039578	100628589.0		NR_039578	ENSMUSG00000093292	Mir5118	mmu-mir-5118|mu-mir-5118	microRNA 5118	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-28750437-4	chr12	28750337	28750537	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178811)	promoter-TSS (NM_178811)	16.0	NM_001161411	217449.0	Mm.132006	NM_178811	ENSMUSG00000020628	Trappc12	CGI-87|D930014A20Rik|Ttc15	trafficking protein particle complex 12	protein-coding	6.93759454988932	6.16408096046587	6.39855790703607	6.25921634134719	6.39447086770737	6.26318596801421	6.03370695312241	6.39102480684758	-0.217866894305238	0.341628484948518	0.842759215970827
Merged-chr6-134171376-2	chr6	134171276	134171476	+	880.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 3 of 8)	ORR1D2|LTR|ERVL-MaLR	135676.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-21065214-4	chr2	21065109	21065309	+	852.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	96335.0	NR_033225	433408.0	Mm.386941	NR_033225		Gm13375	-	predicted gene 13375	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-63965562-4	chr15	63965470	63965670	+	895.020874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360038, intron 2 of 11)	intron (NM_001360038, intron 2 of 11)	32496.0	NM_001360035	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140197924-2	chr5	140197824	140198024	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_152617, intron 10 of 16)	intron (NR_152617, intron 10 of 16)	-23006.0	NM_001359027	17120.0	Mm.27250	NM_010752	ENSMUSG00000029554	Mad1l1	AI173502|AW550425|Mad1	MAD1 mitotic arrest deficient 1-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111445280-2	chr12	111445180	111445380	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_009396, exon 2 of 12)	exon (NM_009396, exon 2 of 12)	2619.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-93011616-2	chr8	93011497	93011697	+	562.0	f0_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36595.0	NM_001013764	244595.0	Mm.390089	NM_001013764	ENSMUSG00000071047	Ces1a	Ces1l|EG244595|Gm4976	carboxylesterase 1A	protein-coding	3.36936407819277	3.42197803941642	1.83116722803017	3.54483126713162	3.07479255954191	3.36464691054396	1.56013745712829	2.77025576217123	-0.587652707395276	0.458264488644789	0.919570891419578
Merged-chr15-78448395-4	chr15	78448286	78448486	+	800.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355601, intron 10 of 17)	intron (NM_001355601, intron 10 of 17)	19822.0	NR_110357	72844.0	Mm.390816	NM_001081367	ENSMUSG00000033287	Kctd17	2900008M13Rik|AA414907|AW742389|N28155	potassium channel tetramerisation domain containing 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-32398608-4	chr3	32398503	32398703	+	957.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32938.0	NM_009517	22401.0	Mm.35705	NM_009517	ENSMUSG00000027663	Zmat3	Wig1	zinc finger matrin type 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-84784077-3	chr2	84783979	84784179	+	679.138916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR53|LTR|ERVL	-8650.0	NM_009776	12258.0	Mm.38888	NM_009776	ENSMUSG00000023224	Serping1	C1INH|C1nh	serine (or cysteine) peptidase inhibitor, clade G, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26124803-2	chr17	26124703	26124903	+	741.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_024227, intron 2 of 4)	intron (NM_024227, intron 2 of 4)	1300.0	NM_024227	68611.0	Mm.273102	NM_024227	ENSMUSG00000024181	Mrpl28	1110015G04Rik|L28mt|MAAT1|MRP-L28|p15	mitochondrial ribosomal protein L28	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-147915305-2	chr5	147915205	147915405	+	816.900024	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20490.0	NM_027872	71706.0	Mm.153218	NM_027872	ENSMUSG00000029650	Slc46a3	1200006F02Rik	solute carrier family 46, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-148512437-2	chr5	148512337	148512537	+	779.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359199, intron 3 of 6)	B4A|SINE|B4	39236.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	-1.26872622733204	-1.24139049354832	-1.25169651944416	-1.09990844973557	-1.2682932763868	-1.23915713474408	-1.24936346108299	-0.832315581531828	1.28993179094749	0.702842249764848	1
Merged-chr2-102827974-4	chr2	102827865	102828065	+	925.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039150, intron 11 of 13)	MTC|LTR|ERVL-MaLR	73700.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90545466-4	chr2	90545361	90545561	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	35186.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-152176819-4	chr4	152176731	152176931	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1269.0	NM_133348	70025.0	Mm.296191	NM_133348	ENSMUSG00000028937	Acot7	2410041A17Rik|Ach1|Act|Bach|CTE-IIa|Cte-II|Lach1	acyl-CoA thioesterase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-31938596-4	chr16	31938465	31938665	+	998.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172822, intron 1 of 2)	MT2B|LTR|ERVL	4714.0	NM_172822	239827.0	Mm.440388	NM_172822	ENSMUSG00000045625	Pigz	F630022B06Rik	phosphatidylinositol glycan anchor biosynthesis, class Z	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-46022459-3	chr1	46022342	46022542	+	904.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_037691, intron 3 of 3)	intron (NR_037691, intron 3 of 3)	7995.0	NR_037690	212225.0	Mm.78540	NM_172504	ENSMUSG00000044457	Stk-ps2	4930509O22|EG212225|Gm4776	serine/threonine kinase 2	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-9535048-4	chr11	9534982	9535182	+	998.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178259, intron 47 of 61)	intron (NM_178259, intron 47 of 61)	343140.0	NM_178259	268379.0	Mm.39270	NM_178259	ENSMUSG00000004668	Abca13	9830132L24|A930002G16Rik|AI956815	ATP-binding cassette, sub-family A (ABC1), member 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-100048356-4	chr15	100048251	100048451	+	943.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159361, intron 1 of 37)	intron (NM_001159361, intron 1 of 37)	9687.0	NM_001159361	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-94284585-2	chr13	94284485	94284685	+	825.099976	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346609, intron 1 of 8)	intron (NM_001346609, intron 1 of 8)	696.0	NM_029153	107767.0	Mm.201455	NM_029153	ENSMUSG00000021687	Scamp1	4930505M11Rik|AI415563|AW122395	secretory carrier membrane protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-132027616-4	chr2	132027541	132027741	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175445, intron 1 of 10)	intron (NM_175445, intron 1 of 10)	2347.0	NM_175445	215653.0	Mm.204737	NM_175445	ENSMUSG00000027339	Rassf2	3830431H01Rik|9030412M04Rik|AI852669|AW495050	Ras association (RalGDS/AF-6) domain family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-85139472-4	chr16	85139378	85139578	+	936.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198825, intron 1 of 15)	intron (NM_001198825, intron 1 of 15)	34229.0	NM_001198825	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	3.92538926389561	4.47396400847284	2.72658660944392	4.59284615213727	3.38775090306845	4.23305981911701	3.05118377800865	3.85622258806968	-0.556563427643229	0.320272336827906	0.822777175850409
Merged-chr18-25546041-3	chr18	25545960	25546160	+	833.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362322, intron 2 of 12)	intron (NM_001362322, intron 2 of 12)	133688.0	NM_001362337	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-43344671-2	chr7	43344603	43344803	+	587.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6638.0	NM_001271019	233186.0	Mm.290569	NM_145581	ENSMUSG00000039013	Siglecf	Siglec5|mSiglec-F	sialic acid binding Ig-like lectin F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-86435878-2	chr1	86435778	86435978	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9549.0	NM_027966	71863.0	Mm.179627	NM_027966	ENSMUSG00000036574	Tex44	1700019O17Rik	testis expressed 44	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-26586208-4	chr11	26586101	26586301	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027260, intron 2 of 12)	intron (NM_027260, intron 2 of 12)	7719.0	NM_027260	69922.0	Mm.285351	NM_027260	ENSMUSG00000064090	Vrk2	2810003O05Rik|AI447698	vaccinia related kinase 2	protein-coding	1.15811209128634	0.704319543445982	2.00991978155198	0.673900080493425	0.857126776300309	1.8518851102218	1.2922619595558	0.676272426810486	-0.0547730931589854	0.970304750994559	0.998431161219273
Merged-chr15-6277936-4	chr15	6277848	6278048	+	923.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21841.0	NM_001008702	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-122343893-3	chr6	122343809	122344009	+	789.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3682.0	NM_001271579	13619.0	Mm.6822	NM_007905	ENSMUSG00000040669	Phc1	AW557034|Edr|Edr1|Mph1|Rae-28|rae28	polyhomeotic 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-31657572-2	chr17	31657472	31657672	+	973.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_024187, intron 1 of 7)	B3A|SINE|B2	1182.0	NM_024187	108121.0	Mm.379289	NM_024187	ENSMUSG00000061613	U2af1	2010107D16Rik	U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-31444705-2	chr3	31444605	31444805	+	612.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-134386.0	NM_172861	241919.0	Mm.285366	NM_172861	ENSMUSG00000069072	Slc7a14	A930013N06|BC061928	solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99024878-3	chr15	99024776	99024976	+	726.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5015.0	NM_009448	22146.0	Mm.88212	NM_009448	ENSMUSG00000043091	Tuba1c	M[a]6|Tuba6	tubulin, alpha 1C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153607774-2	chr2	153607671	153607871	+	584.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25010.0	NM_001195390	99311.0	Mm.294478	NM_133850	ENSMUSG00000056941	Commd7	2310010I22Rik|AW060956|mU3	COMM domain containing 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19166286-2	chr7	19166186	19166386	+	813.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080815)	promoter-TSS (NM_001080815)	-159.0	NM_001080815	381853.0	Mm.333633	NM_001080815	ENSMUSG00000030406	Gipr	GIP-R|Gm1081|Gm160	gastric inhibitory polypeptide receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-137413363-2	chr7	137413263	137413463	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2607.0	NM_029886	77252.0	Mm.29184	NM_029886	ENSMUSG00000040139	9430038I01Rik	-	RIKEN cDNA 9430038I01 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-14224568-4	chr2	14224456	14224656	+	956.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	-4858.0	NM_008625	17533.0	Mm.2019	NM_008625	ENSMUSG00000026712	Mrc1	AW259686|CD206|MR	mannose receptor, C type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-104794672-4	chr3	104794562	104794762	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001291859)	TTS (NM_001291859)	5628.0	NM_001291859	11853.0	Mm.262	NM_007484	ENSMUSG00000002233	Rhoc	AI324259|Arh9|Arhc	ras homolog family member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-108048153-2	chr9	108048053	108048253	+	924.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_013785, exon 6 of 6)	3' UTR (NM_013785, exon 6 of 6)	-1111.0	NM_177910	331026.0	Mm.22554	NM_177910	ENSMUSG00000070284	Gmppb	AI317178|E430010H19	GDP-mannose pyrophosphorylase B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-30862088-4	chr3	30861982	30862182	+	872.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286994, intron 1 of 3)	intron (NM_001286994, intron 1 of 3)	6132.0	NM_001286994	71862.0	Mm.272019	NM_027965	ENSMUSG00000037661	Gpr160	1700025D19Rik|GPCR150	G protein-coupled receptor 160	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-24910311-2	chr5	24910211	24910411	+	563.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145401, intron 4 of 15)	B3A|SINE|B2	-1802.0	NM_001170555	108099.0	Mm.33649	NM_145401	ENSMUSG00000028944	Prkag2	2410051C13Rik|AAKG|AAKG2|AI854673|H91620p|WPWS	protein kinase, AMP-activated, gamma 2 non-catalytic subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-9250820-2	chr4	9250735	9250935	+	698.0	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-18458.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	2.18485248748939	2.32251456539816	3.41129929484977	1.82196587043374	2.20462769266198	1.42316396117432	3.43729411280118	2.67167685522434	0.0938350009946751	0.917595095947568	0.998431161219273
Merged-chr9-119977039-4	chr9	119976929	119977129	+	990.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_153287, exon 2 of 5)	exon (NM_153287, exon 2 of 5)	5994.0	NM_001357560	215418.0	Mm.491094	NM_153287	ENSMUSG00000032515	Csrnp1	4931429D10Rik|Axud1|CSRNP-1|URAX1|taip-3	cysteine-serine-rich nuclear protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-93646091-2	chr2	93645996	93646196	+	687.5	f0_balb.idr|f0_c57.idr	intron (NM_007442, intron 1 of 3)	CpG	3662.0	NM_007442	11695.0	Mm.389389	NM_007442	ENSMUSG00000040310	Alx4	lst	aristaless-like homeobox 4	protein-coding	2.07356274360139	0.993077395531799	0.973557760155836	2.04228054699055	1.944449962735	0.997403112224626	1.70206725078413	1.51219891755198	-0.178365065762712	0.890989832013133	0.998431161219273
Merged-chr11-5791272-2	chr11	5791172	5791372	+	917.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001146309, intron 1 of 12)	intron (NM_001146309, intron 1 of 12)	2789.0	NM_013810	13169.0	Mm.256925	NM_013810	ENSMUSG00000020476	Dbnl	Abp1|SH3P7|mAbp1	drebrin-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-58595319-2	chr6	58595219	58595419	+	619.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355477, intron 1 of 15)	intron (NM_001355477, intron 1 of 15)	-1353.0	NM_011920	26357.0	Mm.333096	NM_011920	ENSMUSG00000029802	Abcg2	ABC15|ABCP|AI428558|BCRP|Bcrp1|MXR|MXR1	ATP binding cassette subfamily G member 2 (Junior blood group)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-11629061-2	chr4	11628961	11629161	+	561.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49399.0	NM_001256142	100503583.0	Mm.249437	NM_001256142	ENSMUSG00000094595	Fsbp	-	fibrinogen silencer binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5479141-1	chr17	5479041	5479241	+	562.0	f0_balb.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	3928.0	NR_073378	666919.0		NR_073378		Gm8363	EG666919	non-SMC condensin II complex, subunit H2 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-90109711-2	chr3	90109611	90109811	+	586.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029937, intron 2 of 39)	intron (NM_029937, intron 2 of 39)	5579.0	NM_029937	77595.0	Mm.159949	NM_029937	ENSMUSG00000027939	Nup210l	4930548O11Rik|R26-EGFP|Tg(Gt(ROSA)26Sor-EGFP)130910Eps	nucleoporin 210-like	protein-coding	1.05346624200017	1.34809081835277	0.455603126552963	0.448298463375834	0.862289165672455	0.467086682297922	0.457680481591048	1.04027924318156	-0.776481348072819	0.659335378470044	1
Merged-chr6-82824529-4	chr6	82824449	82824649	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50095.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-27582011-2	chr3	27581911	27582111	+	623.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356953, intron 4 of 26)	intron (NM_001356953, intron 4 of 26)	2984.0	NR_037275	100526525.0		NR_037275	ENSMUSG00000092695	Mir3092	mir-3092|mmu-mir-3092	microRNA 3092	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171129492-4	chr1	171129388	171129588	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_025321, exon 6 of 6)	3' UTR (NM_025321, exon 6 of 6)	7827.0	NM_001081275	75472.0	Mm.32760	NM_029301	ENSMUSG00000026649	Cfap126	1700009P17Rik|AV282292|Flattop|Fltp	cilia and flagella associated protein 126	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-3333932-2	chr2	3333832	3334032	+	937.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1304.0	NM_001013376	227522.0	Mm.293948	NM_001013376	ENSMUSG00000049950	Rpp38	C330006A15Rik	ribonuclease P/MRP 38 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-23751740-3	chr18	23751650	23751850	+	952.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162942)	promoter-TSS (NM_001162942)	555.0	NR_126066	100502834.0	Mm.213614	NR_126066	ENSMUSG00000086287	Gm15972	-	predicted gene 15972	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3357012-4	chr12	3356896	3357096	+	990.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8136.0	NM_008445	16570.0	Mm.7688	NM_008445	ENSMUSG00000020668	Kif3c	mKIAA4058	kinesin family member 3C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-150843034-2	chr2	150842934	150843134	+	673.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356550)	promoter-TSS (NM_001356550)	-464.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45343762-3	chr7	45343663	45343863	+	826.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029741, exon 22 of 30)	exon (NM_029741, exon 22 of 30)	8494.0	NM_010473	15464.0	Mm.39968	NM_010473	ENSMUSG00000038239	Hrc	-	histidine rich calcium binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-22158971-1	chr10	22158871	22159071	+	697.0	f0_balb.idr	intron (NM_001359809, intron 1 of 7)	intron (NM_001359809, intron 1 of 7)	362.0	NM_009016	19368.0	Mm.458004	NM_009016		Raet1a	RAE-1alpha|Rae1alpha|Raet1	retinoic acid early transcript 1, alpha	protein-coding	2.27945248036139	1.85559667885851	1.5944702182858	2.73685423401981	2.38801906475927	2.46779472392293	1.60496696325606	2.59585820674946	0.269913742525516	0.768312418382746	0.998431161219273
Merged-chr13-9878112-4	chr13	9878016	9878216	+	988.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_033269, exon 5 of 5)	exon (NM_033269, exon 5 of 5)	-112795.0	NM_144516	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128529073-5	chr10	128528984	128529184	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-3225.0	NM_011843	23943.0	Mm.66056	NM_011843	ENSMUSG00000025366	Esyt1	Fam62a|Mbc2|vp115	extended synaptotagmin-like protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-90218206-2	chr16	90218106	90218306	+	778.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2536.0	NM_011434	20655.0	Mm.276325	NM_011434	ENSMUSG00000022982	Sod1	B430204E11Rik|Cu/Zn-SOD|CuZnSOD|Ipo-1|Ipo1|SODC|Sod-1	superoxide dismutase 1, soluble	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-16042861-3	chr9	16042751	16042951	+	901.2666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080814, intron 3 of 24)	intron (NM_001080814, intron 3 of 24)	-168295.0	NM_145712	244701.0	Mm.222631	NM_145712	ENSMUSG00000050901	Mtnr1b	Mel-1B-R|Mel1b|Mt2	melatonin receptor 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166291564-2	chr2	166291464	166291664	+	544.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_033467, intron 2 of 2)	intron (NR_033467, intron 2 of 2)	17656.0	NR_033467	670775.0	Mm.384326	NR_033467	ENSMUSG00000084840	Gm11468	-	predicted gene 11468	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126448578-2	chr7	126448485	126448685	+	718.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_007504, exon 15 of 23)	exon (NM_007504, exon 15 of 23)	14488.0	NM_007504	11937.0	Mm.35134	NM_007504	ENSMUSG00000030730	Atp2a1	SERCA1	ATPase, Ca++ transporting, cardiac muscle, fast twitch 1	protein-coding	0.775244200032528	0.496049530689048	0.485453010008704	1.1933631987764	0.465305679817264	0.498417974703248	1.45120416723062	1.20212552417423	0.947472683708206	0.583375562202484	0.966599221005409
Merged-chr8-84972474-1	chr8	84972374	84972574	+	567.0	f1_c57bl6.idr	intron (NM_001317385, intron 5 of 5)	intron (NM_001317385, intron 5 of 5)	2852.0	NM_011563	21672.0	Mm.347009	NM_011563	ENSMUSG00000005161	Prdx2	AL022839|Band-8|NkefB|PRP|PrxII|TDX1|TPx|TPx-B|TR|TSA|Tdpx1|Torin	peroxiredoxin 2	protein-coding	-1.7024385483431	-1.81249224917775	-1.82134771053534	-1.82862185015837	-1.70038292649591	-1.81057323376012	-1.81934302819017	-1.82731978264371	0.0376840119903864	0.991491645451152	1
Merged-chr4-149770796-2	chr4	149770702	149770902	+	759.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027460, intron 1 of 6)	intron (NM_027460, intron 1 of 6)	3465.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	0.839682333849815	0.533191171380088	0.519407145867623	1.04949052639629	1.48630780400403	1.82757850091789	0.522475895643089	0.510452778378947	1.93749352794783	0.238219656653174	0.734745357461384
Merged-chr4-86669462-4	chr4	86669370	86669570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007408, intron 1 of 7)	intron (NM_007408, intron 1 of 7)	589.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-54796555-2	chr11	54796455	54796655	+	671.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8852.0	NM_178626	72729.0	Mm.29476	NM_178626	ENSMUSG00000052298	Cdc42se2	2810404F18Rik|AA408783|AA536669|SPEC2	CDC42 small effector 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-20147465-2	chr10	20147365	20147565	+	597.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER4B|LTR|ERVK	-1455.0	NM_008635	17761.0	Mm.20928	NM_008635	ENSMUSG00000019996	Map7	E-MAP-115|MAP-7|Mtap7|R75000|mshi|mste|ste	microtubule-associated protein 7	protein-coding	-0.0612132656227781	-0.047727710721077	0.372108664739874	0.22672729154604	-0.0603777540180769	-0.0467233038374207	0.381070859838116	0.231032521114433	0.0362465657339909	0.986695694888309	1
Merged-chr14-121451283-4	chr14	121451178	121451378	+	910.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53976.0	NM_053079	56643.0	Mm.155618	NM_053079	ENSMUSG00000025557	Slc15a1	D630032F02|PECT1|PEPT1	solute carrier family 15 (oligopeptide transporter), member 1	protein-coding	0.137200570889133	0.158668297086557	0.858693103702153	0.146257174348906	0.651235446801507	0.160238535441125	0.871744583453444	0.147206030854858	0.73868582946489	0.726619979884121	1
Merged-chr16-11069501-2	chr16	11069401	11069601	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009223, intron 1 of 1)	intron (NM_009223, intron 1 of 1)	3203.0	NM_009223	20621.0	Mm.325800	NM_009223	ENSMUSG00000037972	Snn	2810407J07Rik|AI848521|AW547286	stannin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141070579-2	chr7	141070479	141070679	+	587.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_177897, exon 15 of 20)	exon (NM_177897, exon 15 of 20)	-7650.0	NM_001162924	56460.0	Mm.350037	NM_019762	ENSMUSG00000054065	Pkp3	2310056L12Rik	plakophilin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-76887008-4	chr12	76886898	76887098	+	934.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145927, intron 4 of 11)	ORR1E|LTR|ERVL-MaLR	49531.0	NM_145927	110606.0	Mm.151174	NM_145927	ENSMUSG00000033373	Fntb	2010013E13Rik|AA409500	farnesyltransferase, CAAX box, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-62668774-2	chr2	62668674	62668874	+	895.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145523, intron 1 of 7)	B1_Mus2|SINE|Alu	4447.0	NM_145523	227960.0	Mm.219877	NM_145523	ENSMUSG00000026893	Gca	5133401E04Rik|AI573844	grancalcin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126260975-2	chr7	126260875	126261075	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360811, intron 1 of 3)	intron (NM_001360811, intron 1 of 3)	-11521.0	NM_145587	104175.0	Mm.29660	NM_145587	ENSMUSG00000042978	Sbk1	Sbk	SH3-binding kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-43771644-2	chr7	43771544	43771744	+	849.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_027097, intron 3 of 4)	intron (NM_027097, intron 3 of 4)	2544.0	NM_027097	69511.0	Mm.20163	NM_027097	ENSMUSG00000044430	Klk12	2310008B01Rik|AI324852|KLK-L5	kallikrein related-peptidase 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-86704809-4	chr10	86704723	86704923	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001003939)	promoter-TSS (NM_001003939)	621.0	NM_011631	22027.0	Mm.87773	NM_011631	ENSMUSG00000020048	Hsp90b1	ERp99|GRP94|TA-3|Targ2|Tra-1|Tra1|endoplasmin|gp96	heat shock protein 90, beta (Grp94), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-62046513-4	chr18	62046408	62046608	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	93433.0	NM_172628	225608.0	Mm.262320	NM_172628	ENSMUSG00000045629	Sh3tc2	D430044G18Rik	SH3 domain and tetratricopeptide repeats 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-34334511-3	chr19	34334414	34334614	+	738.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43855.0	NM_001146708	14102.0	Mm.1626	NM_007987	ENSMUSG00000024778	Fas	AI196731|APO1|APT1|CD95|TNFR6|Tnfrsf6|lpr	Fas (TNF receptor superfamily member 6)	protein-coding	2.29883038709729	2.92407238555174	3.00628387576318	1.75451053216374	2.94637831589891	2.84015278071102	2.63487035783427	2.66349659972851	0.368906859054272	0.627867025620015	0.980912176761026
Merged-chr5-63966102-1	chr5	63966002	63966202	+	585.0	f0_balb.idr	intron (NM_145923, intron 1 of 6)	intron (NM_145923, intron 1 of 6)	2795.0	NM_145923	100532.0	Mm.243632	NM_145923	ENSMUSG00000047881	Rell1	AA536743	RELT-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81390017-4	chr10	81389911	81390111	+	998.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3053.0	NM_001099917	72273.0	Mm.253147	NM_001099917	ENSMUSG00000078439	Smim24	2210404O07Rik	small integral membrane protein 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-41359560-4	chr4	41359469	41359669	+	835.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355508, intron 1 of 6)	B1F2|SINE|Alu	7606.0	NM_001355508	67123.0	Mm.289795	NM_023305	ENSMUSG00000028437	Ubap1	2700092A01Rik|NAG20|UBAP-1|Ubap	ubiquitin-associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-94586483-4	chr16	94586353	94586553	+	918.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113389, intron 1 of 11)	intron (NM_001113389, intron 1 of 11)	15546.0	NM_001113389	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-178187505-4	chr1	178187420	178187620	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_024282, exon 1 of 5)	5' UTR (NM_024282, exon 1 of 5)	103.0	NM_024282	78825.0	Mm.440132	NM_024282	ENSMUSG00000026502	Desi2	5830417C01Rik|DeSI-2|Fam152a|Pppde1	desumoylating isopeptidase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-28003982-4	chr5	28003865	28004065	+	928.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-67447.0	NM_153526	231070.0	Mm.30221	NM_153526	ENSMUSG00000045294	Insig1	1810013C12Rik|Insig-1	insulin induced gene 1	protein-coding	1.61711218912095	1.53928261888204	3.09972649421286	2.71047524305611	3.69856026161126	2.49608127334734	3.44022925465616	3.52370324233088	1.65620681496359	0.0356818700881322	0.267498324252687
Merged-chr16-91836409-2	chr16	91836309	91836509	+	600.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110275, intron 16 of 28)	intron (NM_001110275, intron 16 of 28)	95221.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-36464166-2	chr5	36464066	36464266	+	821.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_126490, intron 1 of 1)	RMER5|LTR|ERV1	688.0	NR_126490	76710.0	Mm.165495	NR_126488	ENSMUSG00000039563	2210406O10Rik	-	RIKEN cDNA 2210406O10 gene	ncRNA	-1.26550836321643	-1.23538490674683	-1.24673049817958	-1.25605010478787	-1.26497736998827	-0.580802564315158	-1.24416210496749	-1.25438189966081	2.74054745292391	0.426663645876262	1
Merged-chr4-147928594-6	chr4	147928475	147928675	+	850.8214109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011122, intron 5 of 18)	intron (NM_011122, intron 5 of 18)	8201.0	NM_011122	18822.0	Mm.23951	NM_011122	ENSMUSG00000019055	Plod1	2410042F05Rik|AI854890|AV007929|Lh1|Plod	procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-108671060-2	chr5	108670960	108671160	+	829.666626	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_174870, exon 3 of 3)	3' UTR (NM_174870, exon 3 of 3)	3736.0	NM_001310692	231583.0	Mm.440571	NM_174870	ENSMUSG00000046959	Slc26a1	Sat1	solute carrier family 26 (sulfate transporter), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-107333658-4	chr3	107333572	107333772	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001045807)	promoter-TSS (NM_001045807)	-383.0	NM_001045807	229700.0	Mm.27966	NM_001045807	ENSMUSG00000048109	Rbm15	C230088J01Rik|mKIAA1438	RNA binding motif protein 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76195314-2	chr15	76195214	76195414	+	912.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163542, intron 1 of 33)	intron (NM_001163542, intron 1 of 33)	396.0	NM_201394	18810.0	Mm.234912	NM_011117	ENSMUSG00000022565	Plec	AA591047|AU042537|EBS1|PCN|PLTN|Plec1	plectin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-173440933-1	chr1	173440833	173441033	+	662.0	f1_balb.idr	intron (NM_001013779, intron 2 of 8)	intron (NM_001013779, intron 2 of 8)	20329.0	NM_001013779	383619.0	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	0.0544270806765931	0.0857240949791781	0.0756989977628729	0.0678166705148911	1.11967301774241	0.0879553257483703	0.0779282761881568	1.30143369913934	4.56093595982152	0.0294708290294411	1
Merged-chr16-49839727-2	chr16	49839627	49839827	+	941.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15927.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-136690831-2	chr3	136690731	136690931	+	590.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008913, intron 1 of 13)	intron (NM_008913, intron 1 of 13)	20765.0	NM_001293622	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-45080014-4	chr14	45079917	45080117	+	983.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MamGypLTR1a|LTR|Gypsy	91906.0	NM_008964	19217.0	Mm.4630	NM_008964	ENSMUSG00000037759	Ptger2	EP2|Ptgerep2	prostaglandin E receptor 2 (subtype EP2)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-28489204-2	chr6	28489104	28489304	+	939.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019776, intron 1 of 23)	intron (NM_019776, intron 1 of 23)	8856.0	NM_019776	56463.0	Mm.439987	NM_019776	ENSMUSG00000001424	Snd1	AL033314|Tudor-SN	staphylococcal nuclease and tudor domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-28746319-4	chr3	28746214	28746414	+	917.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34963.0	NM_177586	208691.0	Mm.193670	NM_177586	ENSMUSG00000050192	Eif5a2	9630038B20|eIF5AII	eukaryotic translation initiation factor 5A2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-94964687-2	chr11	94964587	94964787	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009161, intron 9 of 10)	intron (NM_009161, intron 9 of 10)	-2906.0	NM_018792	54388.0	Mm.30482	NM_018792	ENSMUSG00000038994	Hils1	H1.9|TISP64	histone H1-like protein in spermatids 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-19807575-3	chr14	19807461	19807661	+	882.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008695, intron 17 of 20)	MLT1F2|LTR|ERVL-MaLR	16262.0	NM_026528	68045.0	Mm.21932	NM_026528	ENSMUSG00000021807	Rtraf	2700060E02Rik	RNA transcription, translation and transport factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128567815-2	chr10	128567715	128567915	+	570.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1881.0	NM_011119	18813.0	Mm.4742	NM_011119	ENSMUSG00000025364	Pa2g4	38kDa|AA672939|Ebp1|Plfap	proliferation-associated 2G4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99651706-4	chr15	99651605	99651805	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_012025)	promoter-TSS (NM_012025)	-49.0	NM_001253809	26934.0	Mm.273804	NM_012025	ENSMUSG00000023015	Racgap1	AI227039|AI327394|Band25|GTPase|MgcRacGAP|gtl11|mKIAA1478	Rac GTPase-activating protein 1	protein-coding	3.92375637298896	4.19495339056752	3.52860848362574	4.492767447053	3.95491724456355	4.28569238976369	4.21029264421265	3.12927621313124	-0.16636669988137	0.731216201615426	0.998431161219273
Merged-chr13-94161888-1	chr13	94161788	94161988	+	749.0	f0_balb.idr	intron (NM_172589, intron 2 of 3)	intron (NM_172589, intron 2 of 3)	104092.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-102995385-4	chr14	102995288	102995488	+	995.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045657, intron 2 of 2)	intron (NR_045657, intron 2 of 2)	-12751.0	NM_177715	239217.0	Mm.246466	NM_177715	ENSMUSG00000098557	Kctd12	AU046135|AW538430|Pfet1|Pfetin	potassium channel tetramerisation domain containing 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65584313-1	chr9	65584213	65584413	+	547.0	f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	-2847.0	NR_151702	208084.0	Mm.211032	NM_172453	ENSMUSG00000041064	Pif1	4631410M14|AI449441	PIF1 5'-to-3' DNA helicase	protein-coding	-1.06997269762433	-1.30473905204845	-1.3145270772132	-1.32256725251374	-1.06385251204029	-1.30261794616352	-1.3123112828633	-1.32112806497905	0.0394047164033882	0.991001358494878	1
Merged-chr8-71382796-4	chr8	71382698	71382898	+	994.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010150)	promoter-TSS (NM_010150)	-846.0	NM_010150	13864.0	Mm.28989	NM_010150	ENSMUSG00000002393	Nr2f6	AV090102|COUP-TF3|EAR2|Erbal2	nuclear receptor subfamily 2, group F, member 6	protein-coding	0.355532953385977	0.101160936439226	0.0950540620812052	0.0903325182608872	0.665926814091634	0.846163995169024	0.0964021887480888	0.261747938911437	2.59725990522975	0.210784406525478	1
Merged-chr5-23410306-4	chr5	23410130	23410330	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24123.0	NR_040469	269630.0	Mm.425231	NR_040469	ENSMUSG00000073147	5031425E22Rik	-	RIKEN cDNA 5031425E22 gene	ncRNA	4.36860282835518	2.99947414685307	3.55993696645087	4.42481883361878	3.60156962210621	3.29480579911682	3.58804251550578	4.18162134346422	-0.373405469143045	0.486221298845829	0.932503166794264
Merged-chr9-104061975-2	chr9	104061875	104062075	+	858.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025692, intron 1 of 11)	intron (NM_025692, intron 1 of 11)	1146.0	NM_025692	66663.0	Mm.224935	NM_025692	ENSMUSG00000032557	Uba5	5730525G14Rik|AW240750|Ube1dc1	ubiquitin-like modifier activating enzyme 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-51733207-2	chr13	51733107	51733307	+	848.650024	f1_balb.idr|f1_c57bl6.idr	intron (NM_013660, intron 2 of 15)	B1_Mus1|SINE|Alu	60540.0	NM_001281880	20354.0	Mm.33903	NM_013660	ENSMUSG00000021451	Sema4d	CD100|Semacl2|Semaj|Semcl2|coll-4	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-96208588-4	chr16	96208492	96208692	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015825, intron 2 of 7)	intron (NM_015825, intron 2 of 7)	8122.0	NM_015825	50795.0	Mm.28638	NM_015825	ENSMUSG00000040666	Sh3bgr	5430437A18Rik	SH3-binding domain glutamic acid-rich protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83457604-2	chr6	83457504	83457704	+	607.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1212.0	NM_001347313	194388.0	Mm.211030	NM_183138	ENSMUSG00000034832	Tet3	B430006D22Rik|BC037432|D230004J03Rik	tet methylcytosine dioxygenase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129188974-4	chr4	129188856	129189056	+	913.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134151)	promoter-TSS (NM_134151)	586.0	NM_029036	74648.0	Mm.172064	NM_029036	ENSMUSG00000040928	S100pbp	4930429A08Rik|AI851343|S100pbpr	S100P binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-21727000-3	chr4	21726880	21727080	+	748.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290420)	promoter-TSS (NM_001290420)	-721.0	NM_001290422	51813.0	Mm.278584	NM_016746	ENSMUSG00000028252	Ccnc	AI451004|AU020987|CG1C	cyclin C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75162822-2	chr11	75162722	75162922	+	604.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001002764, exon 19 of 19)	exon (NM_001002764, exon 19 of 19)	5330.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118182018-2	chr11	118181918	118182118	+	574.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001112700, intron 9 of 12)	intron (NM_001112700, intron 9 of 12)	30724.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-170158194-8	chr2	170158121	170158321	+	896.089294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15546.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-173419152-4	chr1	173419037	173419237	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1467.0	NM_001013779	383619.0	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	7.08088990230631	6.9688798186825	6.78594499529146	7.13377429108601	5.45014550141157	5.51140676498591	4.75635150217586	5.80208308539507	-1.69851638804658	3.04070693770773e-13	1.14007505745679e-10
Merged-chr6-89300037-3	chr6	89299886	89300086	+	919.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14261.0	NR_131021	75131.0	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	Gm44205	RIKEN cDNA 4930512J16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166796247-2	chr2	166796147	166796347	+	747.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_023815, exon 2 of 2)	3' UTR (NM_023815, exon 2 of 2)	2480.0	NM_023815	76367.0	Mm.330796	NM_023815	ENSMUSG00000042854	Trp53rkb	2810408M09Rik|4933401B08Rik|5630401H01Rik|Nori-2|PRPK|Tp53rk|Trp53rk|Trp53tk|mNori-2p	transformation related protein 53 regulating kinase B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-189873481-1	chr1	189873381	189873581	+	800.0	f0_balb.idr	3' UTR (NM_008976, exon 19 of 19)	3' UTR (NM_008976, exon 19 of 19)	48810.0	NM_026796	226830.0	Mm.156895	NM_026796	ENSMUSG00000026603	Smyd2	1110020E07Rik|4930402C15|KMT3C|Zmynd14	SET and MYND domain containing 2	protein-coding	-0.587243371041292	-0.576151048430619	-0.579789971658597	-0.417684704410952	0.139936705100959	-0.575330145982978	-0.397545851483609	-0.582104589886896	2.52235923299375	0.337681576954834	1
Merged-chr8-4366456-2	chr8	4366356	4366556	+	557.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16868.0	NM_009138	20300.0	Mm.7275	NM_009138	ENSMUSG00000023235	Ccl25	A130072A22Rik|AI852536|CKb15|Scya25|TECK	chemokine (C-C motif) ligand 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-36044952-4	chr17	36044867	36045067	+	877.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034909, intron 1 of 2)	MLT1F1|LTR|ERVL-MaLR	2006.0	NM_001034909	547347.0	Mm.484641	NM_001034909	ENSMUSG00000073407	Gm6034	EG547347|H2-gs14-2	predicted gene 6034	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-79786719-4	chr1	79786625	79786825	+	785.895813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10707.0	NM_001081210	69163.0	Mm.238455	NM_001081210	ENSMUSG00000026248	Mrpl44	1810030E18Rik|5730593H20Rik|AI463302	mitochondrial ribosomal protein L44	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-116206550-2	chr3	116206450	116206650	+	679.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46934.0	NM_022427	64378.0	Mm.40025	NM_022427	ENSMUSG00000068696	Gpr88	AW061286|Strg	G-protein coupled receptor 88	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-106528210-4	chr8	106528101	106528301	+	833.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007665, intron 2 of 15)	B4|SINE|B4	17349.0	NM_001037809	12560.0	Mm.4658	NM_007665	ENSMUSG00000061048	Cdh3	AI385538|Cadp|Cdhp|P-cadherin|Pcad	cadherin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-118483408-2	chr2	118483308	118483508	+	580.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3712.0	NM_009273	20813.0	Mm.363404	NM_009273	ENSMUSG00000009549	Srp14	14kDa|AW536328	signal recognition particle 14	protein-coding	-0.763259141758315	-1.10033796993195	-1.11088047887396	-0.961254762351736	-0.98163800128464	-1.09805336426509	-1.10849388593471	-1.11799028615135	-1.46376624633071	0.631847984820285	1
Merged-chr11-120305927-2	chr11	120305827	120306027	+	726.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41486.0	NR_105900	102465564.0		NR_105900	ENSMUSG00000098955	Mir6935	Gm27344|mmu-mir-6935	microRNA 6935	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-103738431-4	chr3	103738333	103738533	+	933.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133859)	promoter-TSS (NM_133859)	-432.0	NM_133859	99543.0	Mm.211535	NM_133859	ENSMUSG00000027848	Olfml3	2810002E22Rik|AI115209|AW550633|HNOEL-iso|ONT3|mONT3	olfactomedin-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-73057541-2	chr10	73057441	73057641	+	690.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_040646, intron 1 of 4)	Lx5|LINE|L1	29164.0	NR_040646	327768.0	Mm.417745	NR_040646	ENSMUSG00000111994	A330049N07Rik	-	RIKEN cDNA A330049N07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44410846-2	chr9	44410746	44410946	+	560.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_024266)	TTS (NM_024266)	3132.0	NM_024266	75617.0	Mm.292027	NM_024266	ENSMUSG00000009927	Rps25	2810009D21Rik	ribosomal protein S25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-185238639-4	chr1	185238501	185238701	+	970.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163754, intron 7 of 34)	intron (NM_001163754, intron 7 of 34)	-4325.0	NR_034044	100217449.0	Mm.429560	NR_034044	ENSMUSG00000077571	Snora36b	MBI-87	small nucleolar RNA, H/ACA box 36B	snoRNA	3.03017518004611	3.84023405598425	1.42460613417923	2.08989392504429	2.63893041237572	3.27144738205123	3.24146138097317	1.67174232518666	-0.122909811433295	0.889661042716296	0.998431161219273
Merged-chr6-39257030-5	chr6	39256767	39256967	+	791.733337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-50094.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-45651685-4	chr16	45651585	45651785	+	979.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145389, intron 1 of 5)	MTD|LTR|ERVL-MaLR	2433.0	NM_145389	212998.0	Mm.97511	NM_145389	ENSMUSG00000033187	BC016579	-	cDNA sequence, BC016579	protein-coding	6.06629419694467	5.95858526524404	6.25684314531544	6.07445180687923	3.56269758727767	4.80082202860107	4.74726606733616	2.97736002813317	-2.19979276958913	2.11528902965248e-09	3.30449982968112e-07
Merged-chr18-61452002-4	chr18	61451923	61452123	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32584.0	NR_045419	442846.0	Mm.417648	NR_045419		A530050N04Rik	-	RIKEN cDNA A530050N04 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-3289398-4	chr11	3289312	3289512	+	912.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045108, intron 1 of 5)	CpG	281.0	NR_045109	56218.0	Mm.275563	NM_019574	ENSMUSG00000020453	Patz1	8430401L15Rik|AI447519|Mazr|Patz|Zfp278	POZ (BTB) and AT hook containing zinc finger 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-53143158-2	chr15	53143058	53143258	+	652.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	203025.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-59055014-3	chr3	59054898	59055098	+	787.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177855, intron 4 of 43)	intron (NM_177855, intron 4 of 43)	46823.0	NM_173398	229323.0	Mm.123648	NM_173398	ENSMUSG00000050075	Gpr171	A630006E05|F730001G15Rik|H963	G protein-coupled receptor 171	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-139352490-4	chr4	139352371	139352571	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039200)	promoter-TSS (NM_001039200)	105.0	NM_001290810	69902.0	Mm.27871	NM_023536	ENSMUSG00000028741	Mrto4	2610012O22Rik|Mg684|Mrt4	mRNA turnover 4, ribosome maturation factor	protein-coding	3.17269992621056	3.49285853228276	4.30302653754762	3.69979441675401	4.32383912434745	4.04656286600308	5.27215217049526	1.99759126161189	0.804000396909761	0.206031489385942	0.693707835750198
Merged-chr4-35156313-4	chr4	35156224	35156424	+	992.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178061, intron 1 of 3)	intron (NM_178061, intron 1 of 3)	1160.0	NM_178061	214944.0	Mm.32968	NM_178061	ENSMUSG00000073910	Mob3b	8430436F23Rik|A430018A01Rik|Mobkl2b	MOB kinase activator 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-32940632-4	chr9	32940508	32940708	+	999.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11642.0	NR_131058	330917.0	Mm.488283	NR_131058		Gm27162	A430016B06	predicted gene 27162	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27612187-4	chr17	27612092	27612292	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019837, intron 1 of 4)	intron (NM_019837, intron 1 of 4)	10772.0	NM_001291046	56409.0	Mm.144699	NM_019837	ENSMUSG00000024213	Nudt3	1110011B09Rik|AA960325|Dipp|Dipp1	nudix (nucleotide diphosphate linked moiety X)-type motif 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24158230-2	chr17	24158099	24158299	+	645.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_172935, exon 6 of 11)	exon (NM_172935, exon 6 of 11)	5534.0	NM_172935	245847.0	Mm.87319	NM_172935	ENSMUSG00000036820	Amdhd2	5730457F11Rik	amidohydrolase domain containing 2	protein-coding	-0.371007909770923	-0.357306623506723	-0.361790196605985	0.180423218768402	0.37237044217155	-0.356296628704505	-0.360800890366678	-0.364647676149069	0.599961124595019	0.821874929730461	1
Merged-chr17-35838329-4	chr17	35838229	35838429	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011655)	promoter-TSS (NM_011655)	-28.0	NM_011655	22154.0	Mm.273538	NM_011655	ENSMUSG00000001525	Tubb5	AA408537|AI596182|B130022C14Rik|M(beta)5	tubulin, beta 5 class I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-39686041-3	chr1	39685940	39686140	+	883.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145660, intron 7 of 14)	intron (NM_001145660, intron 7 of 14)	-34858.0	NM_170597	263764.0	Mm.122091	NM_170597	ENSMUSG00000050967	Creg2	A830098L22Rik	cellular repressor of E1A-stimulated genes 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-83339614-2	chr4	83339514	83339714	+	625.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB5|LINE|L1	-15425.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	-0.431941462472486	0.110082512209784	-0.422048447145995	-0.425756688303069	-0.431019119647636	0.36329898720801	-0.420990713255117	-0.425107940724096	0.793752076293891	0.765825856819806	1
Merged-chr1-39478707-4	chr1	39478602	39478802	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357522)	promoter-TSS (NM_001357522)	45.0	NM_018775	54610.0	Mm.387293	NM_018775	ENSMUSG00000003134	Tbc1d8	AD3|HBLP1|VRP	TBC1 domain family, member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-62554827-2	chr10	62554727	62554927	+	968.1666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23630.0	NM_028197	72320.0	Mm.258955	NM_028197	ENSMUSG00000036955	Kif1bp	0710007C18Rik|2510003E04Rik|KBP|mKIAA1279	KIF1 binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-25355643-2	chr2	25355543	25355743	+	818.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_031843, exon 4 of 13)	exon (NM_031843, exon 4 of 13)	689.0	NM_031843	83768.0	Mm.21440	NM_031843	ENSMUSG00000026958	Dpp7	DPPII|Dpp2|QPP	dipeptidylpeptidase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-106415999-4	chr8	106415921	106416121	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011764, intron 1 of 3)	intron (NM_011764, intron 1 of 3)	682.0	NM_011764	22751.0	Mm.295582	NM_011764	ENSMUSG00000031907	Zfp90	6430515L01Rik|KRAB17|NK10|Zfp64|Zfp83|mKIAA1954	zinc finger protein 90	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-62933158-4	chr9	62933035	62933235	+	870.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019663, intron 2 of 13)	intron (NM_019663, intron 2 of 13)	47744.0	NM_019663	56469.0	Mm.431253	NM_019663	ENSMUSG00000032405	Pias1	2900068C24Rik|Ddxbp1|GBP	protein inhibitor of activated STAT 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-163758364-3	chr2	163758259	163758459	+	932.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8120.0	NM_001272052	11486.0	Mm.388	NM_007398	ENSMUSG00000017697	Ada	-	adenosine deaminase	protein-coding	1.32369820477525	0.654166710125967	0.438409046718783	1.10358090321354	0.835122455556826	0.659788215467417	0.440341597136961	0.432810239634314	-1.81410034013937	0.289080081426742	1
Merged-chr6-39055271-4	chr6	39055156	39055356	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 9 of 12)	intron (NM_011539, intron 9 of 12)	12330.0	NR_040523	69986.0	Mm.490941	NR_040523	ENSMUSG00000100121	1700025N23Rik	-	RIKEN cDNA 1700025N23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-52504781-5	chr12	52504579	52504779	+	779.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-11398.0	NM_009706	11855.0	Mm.35059	NM_009706	ENSMUSG00000035133	Arhgap5	p190-B|p190B	Rho GTPase activating protein 5	protein-coding	-1.18378942727406	-1.15669478905697	-0.457913181653105	-1.17806440097404	-1.18323730008524	-1.15415234459186	-1.16577117532349	-1.17633933179771	-2.81844548480871	0.412768592413622	1
Merged-chr11-69623983-2	chr11	69623883	69624083	+	748.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001356469)	TTS (NM_001356469)	1931.0	NM_001356468	69215.0	Mm.340410	NM_026991	ENSMUSG00000069835	Sat2	2610016A03Rik|SSAT-2|SSAT2	spermidine/spermine N1-acetyl transferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-82815890-4	chr18	82815777	82815977	+	843.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40020.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-148039658-2	chr2	148039558	148039758	+	694.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5806.0	NM_001291067	15376.0	Mm.938	NM_010446	ENSMUSG00000037025	Foxa2	HNF3-beta|HNF3beta|Hnf-3b|Hnf3b|Tcf-3b|Tcf3b	forkhead box A2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-30789779-4	chr10	30789714	30789914	+	765.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358842, intron 1 of 14)	intron (NM_001358842, intron 1 of 14)	13512.0	NM_001358841	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80205821-2	chr7	80205721	80205921	+	585.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360135, intron 1 of 13)	intron (NM_001360135, intron 1 of 13)	7380.0	NM_001360135	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129880060-2	chr2	129879969	129880169	+	915.3333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-78610.0	NR_029452	654409.0	Mm.305555	NR_029452		Stk35os1	4932416H05Rik	serine/threonine kinase 35, opposite strand 1	ncRNA	2.0018454844029	2.51722297433721	1.6254528259189	3.0767823864072	2.61729846802803	2.10331692464916	1.63693707520204	2.75097242051962	-0.162202487863482	0.857385938991112	0.998431161219273
Merged-chr1-170371502-4	chr1	170371365	170371565	+	992.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109985, intron 4 of 9)	intron (NM_001109985, intron 4 of 9)	62604.0	NM_001039593	76925.0	Mm.33631	NM_001039593	ENSMUSG00000042800	Spata46	1700015E13Rik	spermatogenesis associated 46	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-46417064-2	chr18	46416964	46417164	+	758.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48752.0	NR_045438	72076.0	Mm.82766	NM_028086		Mospd4	2010013H21Rik	motile sperm domain containing 4	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-72646588-3	chr8	72646479	72646679	+	893.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_176940)	promoter-TSS (NM_176940)	-132.0	NM_176940	319555.0	Mm.390076	NM_176940	ENSMUSG00000048148	Nwd1	A230063L24Rik	NACHT and WD repeat domain containing 1	protein-coding	-2.18292257394068	-2.15545247547656	-2.03304972317742	-2.17058342868585	-2.18099422382073	-2.1536522739386	-2.16187909550322	-2.16936197735154	-0.683654500252594	0.846597994014493	1
Merged-chr6-47790821-6	chr6	47790626	47790826	+	998.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12926.0	NR_030485	735289.0		NR_030485	ENSMUSG00000076060	Mir704	Mirn704|mir-704|mmu-mir-704	microRNA 704	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-173537343-1	chr2	173537243	173537443	+	656.0	f1_c57bl6.idr	Intergenic	Intergenic	14751.0	NM_028158	72221.0	Mm.46132	NM_028158	ENSMUSG00000027518	1700021F07Rik	-	RIKEN cDNA 1700021F07 gene	protein-coding	-0.514277026420303	-0.778207403506971	-0.0956792790509572	-0.784154387422975	-0.787814877354107	-0.7769395679013	-0.780823814601969	-0.783701879257098	-3.20153101767105	0.268781693623117	1
Merged-chr7-75684738-1	chr7	75684638	75684838	+	596.5	f0_balb.idr	intron (NM_029332, intron 12 of 36)	intron (NM_029332, intron 12 of 36)	-163600.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	-2.18138529563533	-2.15523716995652	-2.1631445789866	-2.16963996020037	-2.05513010215571	-2.15352360143315	-2.16135451490766	-2.16847729006863	0.759018020146679	0.829933115115583	1
Merged-chr12-91589123-4	chr12	91589008	91589208	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175335, intron 1 of 8)	intron (NM_175335, intron 1 of 8)	541.0	NM_031391	83602.0	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-91955068-4	chr1	91954963	91955163	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207225, intron 22 of 26)	intron (NM_207225, intron 22 of 26)	153602.0	NM_007855	13345.0	Mm.9474	NM_007855	ENSMUSG00000007805	Twist2	Dermo1|bHLHa39	twist basic helix-loop-helix transcription factor 2	protein-coding	3.37569545151185	3.85955291742667	4.10181269525334	3.3988380965949	3.72428344388712	4.31447073003142	3.23433098650973	2.43593019020345	-0.176096494260508	0.763452667983101	0.998431161219273
Merged-chr17-28327722-3	chr17	28327665	28327865	+	945.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011287)	promoter-TSS (NM_011287)	-706.0	NM_011287	19896.0	Mm.336955	NM_011287	ENSMUSG00000037805	Rpl10a	CsA-19|Nedd6	ribosomal protein L10A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-32544846-3	chr9	32544721	32544921	+	710.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3369.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91921977-4	chr2	91921899	91922099	+	920.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007699)	promoter-TSS (NM_007699)	-190.0	NM_007699	12672.0	Mm.330405	NM_007699	ENSMUSG00000040495	Chrm4	Chrm-4|M4	cholinergic receptor, muscarinic 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-48407376-2	chr17	48407296	48407496	+	758.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110832, intron 1 of 9)	intron (NM_001110832, intron 1 of 9)	2424.0	NM_001110832	18044.0	Mm.4929	NM_010913	ENSMUSG00000023994	Nfya	AA407810|Cbf-b|SEZ-10|SEZ10	nuclear transcription factor-Y alpha	protein-coding	1.77529319500751	1.63554801630215	2.02706007286401	1.53846270368217	1.19038227883783	1.06369068057023	1.59351382123322	1.78431180769825	-1.04768259032136	0.358275112590228	0.85538301953918
Merged-chr14-52267536-3	chr14	52267443	52267643	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172601, intron 5 of 7)	L1MB3|LINE|L1	-11603.0	NM_023434	268741.0	Mm.246237	NM_023434	ENSMUSG00000016831	Tox4	5730589K01Rik|A630040M18|AA410149|LCP1	TOX high mobility group box family member 4	protein-coding	4.02167943463186	4.12085011807744	4.04499215823909	3.88404638429146	3.34527745301831	2.89288202768262	3.05513238178889	1.6459221878102	-1.74568203799661	0.00328978127869341	0.0485694779923259
Merged-chr13-41097853-4	chr13	41097778	41097978	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12110.0	NM_008104	107889.0	Mm.1399	NM_008104	ENSMUSG00000021362	Gcm2	Gcm-rs1|Gcm1|Gcm1-rs2	glial cells missing homolog 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-109278051-2	chr13	109277951	109278151	+	687.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011056, intron 3 of 16)	intron (NM_011056, intron 3 of 16)	-46693.0	NR_030644	100124489.0		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-121279282-4	chr14	121279215	121279415	+	936.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134082, intron 24 of 26)	intron (NM_134082, intron 24 of 26)	30609.0	NR_155502	320268.0	Mm.435974	NR_155502		B930095G15Rik	-	RIKEN cDNA B930095G15 gene	ncRNA	3.75215252873486	3.00051732149506	3.22775541198085	3.88796050458935	3.73226569876468	3.02319262511682	3.25306035102036	2.54883854665134	-0.484433270903029	0.421547977400736	0.900322118218157
Merged-chr5-135614794-4	chr5	135614610	135614810	+	919.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17944.0	NM_001357037	215160.0	Mm.295438	NM_031398	ENSMUSG00000039917	Rhbdd2	0610011L13Rik|AI480532|Rhbdl7|Usmg1	rhomboid domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-8663928-4	chr15	8663823	8664023	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_148938, intron 3 of 9)	L3|LINE|CR1	46884.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-37877864-4	chr18	37877751	37877951	+	926.56665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007858, intron 16 of 26)	intron (NM_007858, intron 16 of 26)	-23191.0	NR_105945	102465592.0		NR_105945	ENSMUSG00000098706	Mir6979	Gm27524|mmu-mir-6979	microRNA 6979	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-25458561-5	chr14	25458459	25458659	+	998.099976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310666)	promoter-TSS (NM_001310666)	-626.0	NM_001310666	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-77517195-4	chr10	77517092	77517292	+	983.258301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1379.0	NM_133998	108707.0	Mm.259547	NM_133998	ENSMUSG00000032977	Fam207a	1810008A18Rik|AI303072	family with sequence similarity 207, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-8846909-2	chr4	8846809	8847009	+	803.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355382, intron 20 of 36)	intron (NM_001355382, intron 20 of 36)	95585.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-85375279-1	chr9	85375179	85375379	+	641.666687	f0_balb.idr	Intergenic	Intergenic	-48129.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-38296830-3	chr13	38296732	38296932	+	937.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48884.0	NM_007556	12161.0	Mm.385759	NM_007556	ENSMUSG00000039004	Bmp6	D13Wsu115e|Vgr1	bone morphogenetic protein 6	protein-coding	-0.554983723723701	-0.704086203922887	-0.708346067563454	0.241818482759768	-0.716351032896679	-0.703129730448039	-0.707404169056453	-0.711072860283039	-3.50041609251866	0.20318916738585	1
Merged-chr9-99096841-3	chr9	99096745	99096945	+	858.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029094, intron 4 of 23)	intron (NM_029094, intron 4 of 23)	43366.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-64139131-2	chr9	64139031	64139231	+	728.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_026507, intron 18 of 18)	IAPEY4_LTR|LTR|ERVK	21984.0	NM_145835	235435.0	Mm.436581	NM_145835	ENSMUSG00000032401	Lctl	E130104I05Rik|KLPH	lactase-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-12572979-2	chr13	12572879	12573079	+	622.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026184, intron 1 of 15)	intron (NM_026184, intron 1 of 15)	7096.0	NM_026184	67475.0	Mm.358706	NM_026184	ENSMUSG00000057069	Ero1lb	1300013B24Rik|1700065B09Rik|AI447560|Ero1b|ero1-beta	ERO1-like beta (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-45195891-2	chr2	45195791	45195991	+	959.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-78449.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26501182-5	chr17	26501116	26501316	+	815.599976	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7256.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-57377605-4	chr1	57377499	57377699	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_037999)	promoter-TSS (NR_037999)	-21.0	NM_028546	73467.0	Mm.263673	NM_028546	ENSMUSG00000038323	1700066M21Rik	AI428479	RIKEN cDNA 1700066M21 gene	protein-coding	7.27920471912896	7.85313562106911	7.3196746688051	7.34684419001935	6.77174289649334	7.54151022010695	6.98374517988044	6.95602848913207	-0.396988594166862	0.0420993300190055	0.293895128918558
Merged-chr14-75130080-1	chr14	75129980	75130180	+	542.0	f1_c57bl6.idr	intron (NM_027581, intron 1 of 9)	AT_rich|Low_complexity|Low_complexity	803.0	NM_027581	70859.0	Mm.320289	NM_027581	ENSMUSG00000021997	Lrrc63	4921509B22Rik	leucine rich repeat containing 63	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-41569671-4	chr4	41569600	41569800	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159583)	promoter-TSS (NM_001159583)	-94.0	NM_175138	68922.0	Mm.79127	NM_175138	ENSMUSG00000061322	Dnaic1	1110066F04Rik|BB124644|Dnai1|b2b1526Clo	dynein, axonemal, intermediate chain 1	protein-coding	7.68629047396891	7.05052435191023	7.4645618865165	7.54238765369197	6.95548087458993	6.81552625529866	6.72704522737906	6.07626649221817	-0.818275138500444	6.27784339661562e-05	0.00211577429979197
Merged-chr5-135778518-4	chr5	135778403	135778603	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008617)	promoter-TSS (NM_008617)	-118.0	NM_001289557	76571.0	Mm.247666	NM_029659	ENSMUSG00000019178	Styxl1	1700011C14Rik|Dusp24|Mkstyx	serine/threonine/tyrosine interacting-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-27702404-4	chr15	27702295	27702495	+	983.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20853.0	NM_001242423	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-13940632-4	chr17	13940494	13940694	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7779.0	NM_001122977	635895.0	Mm.388844	NM_001122977	ENSMUSG00000067941	Gm7168	EG635895	predicted gene 7168	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-34372807-4	chr2	34372720	34372920	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016768)	promoter-TSS (NM_016768)	-775.0	NM_016768	18516.0	Mm.239941	NM_016768	ENSMUSG00000038718	Pbx3	-	pre B cell leukemia homeobox 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-160383053-3	chr2	160382956	160383156	+	682.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15991.0	NM_010658	16658.0	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-146454336-2	chr4	146454236	146454436	+	725.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085522, intron 1 of 3)	intron (NM_001085522, intron 1 of 3)	5306.0	NM_001085522	433791.0	Mm.276881	NM_001085522	ENSMUSG00000070605	Zfp992	Gm13251	zinc finger protein 992	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-139126065-3	chr7	139125967	139126167	+	670.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021302, intron 2 of 11)	intron (NM_021302, intron 2 of 11)	40066.0	NM_011993	26757.0	Mm.250414	NM_011993	ENSMUSG00000025478	Dpysl4	AI173505|CRMP-3|Crmp3|DPY4|Drp-4|Ulip4	dihydropyrimidinase-like 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-45575111-2	chr19	45575011	45575211	+	907.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_172639, intron 4 of 5)	intron (NM_172639, intron 4 of 5)	14526.0	NM_172639	226162.0	Mm.21978	NM_172639	ENSMUSG00000041035	Dpcd	Ndac	deleted in primary ciliary dyskinesia	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-29501189-5	chr19	29501048	29501248	+	850.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR33|LTR|ERVL	20839.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-57073877-1	chr4	57073777	57073977	+	630.0	f1_c57bl6.idr	intron (NM_001355492, intron 11 of 24)	intron (NM_001355492, intron 11 of 24)	69279.0	NM_019427	54357.0	Mm.28217	NM_019427	ENSMUSG00000028434	Epb41l4b	6430543G08Rik|AA589614|AU021054|BB007528|D4Ertd346e|Ehm2|Epb4.1l4b|Lulu2	erythrocyte membrane protein band 4.1 like 4b	protein-coding	-0.123521891972083	-0.422089945200557	0.69840352358151	-0.432398584609188	-0.438848332691921	-0.420792865666353	-0.426600144886408	-0.431606933623925	-3.89166526744123	0.118397275510275	1
Merged-chr3-13171710-2	chr3	13171610	13171810	+	778.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTRIS2|LTR|ERV1	-299945.0	NM_001357033	76897.0	Mm.422625	NM_178631	ENSMUSG00000039717	Ralyl	0710005M24Rik	RALY RNA binding protein-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-80709729-3	chr18	80709626	80709826	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198429, intron 1 of 9)	intron (NM_198429, intron 1 of 9)	-1553.0	NM_001164112	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21090964-2	chr9	21090864	21091064	+	753.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_038081, intron 1 of 16)	intron (NR_038081, intron 1 of 16)	1024.0	NM_027911	71766.0	Mm.196137	NM_027911	ENSMUSG00000010205	Raver1	1300006N24Rik|AA050359|mKIAA1978	ribonucleoprotein, PTB-binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-111579739-4	chr9	111579658	111579858	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016853, intron 8 of 10)	B4|SINE|B4	110590.0	NM_016853	20840.0	Mm.1414	NM_016853	ENSMUSG00000032502	Stac	-	src homology three (SH3) and cysteine rich domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-69552199-2	chr5	69552099	69552299	+	639.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-4725.0	NM_172711	231279.0	Mm.21105	NM_172711	ENSMUSG00000029208	Guf1	4631409J12|AA407526|EF-4	GUF1 homolog, GTPase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-76606192-2	chr12	76606092	76606292	+	579.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013675, intron 23 of 35)	intron (NM_013675, intron 23 of 35)	-58267.0	NR_046044	100504549.0	Mm.440349	NR_046044	ENSMUSG00000112388	AI463170	-	expressed sequence AI463170	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135273855-2	chr4	135273755	135273955	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1095.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-32737523-1	chr3	32737423	32737623	+	546.0	f0_balb.idr	promoter-TSS (NM_029017)	promoter-TSS (NM_029017)	460.0	NM_025316	66046.0	Mm.28058	NM_025316	ENSMUSG00000027673	Ndufb5	0610007D05Rik|AU015782|CI-SGDH|SGDH	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 5	protein-coding	2.55570913430578	4.21390084183614	2.64517887637264	3.86422532905722	2.83303585539386	4.24254913468603	3.58661207228741	3.93974842942384	0.332788126890406	0.596009307530541	0.971416365479727
Merged-chr19-32912111-3	chr19	32912027	32912227	+	851.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR31C_MM|LTR|ERVK	154550.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	-0.780689899197429	-0.770759266650499	-0.774016118468539	-0.140663379535221	-0.780070962187627	-0.769812730548052	-0.773298066095734	-0.464100099476724	-1.21794334503419	0.684365671874978	1
Merged-chr11-61750249-2	chr11	61750149	61750349	+	740.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_144806, intron 5 of 11)	intron (NM_144806, intron 5 of 11)	11839.0	NM_144806	212627.0	Mm.27703	NM_144806	ENSMUSG00000020528	Prpsap2	A230054F23Rik	phosphoribosyl pyrophosphate synthetase-associated protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-108536886-8	chr6	108536797	108536997	+	934.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 60 of 61)	intron (NM_010585, intron 60 of 61)	47154.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	0.881079022761332	0.445157842985245	0.87728612663232	0.726042267899394	0.688093642245897	0.929631731619309	0.6134680007053	0.434038255990116	-0.404759487834974	0.803201297299001	1
Merged-chr10-80406803-4	chr10	80406669	80406869	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025650)	promoter-TSS (NM_025650)	52.0	NM_025650	66594.0	Mm.379119	NM_025650	ENSMUSG00000020163	Uqcr11	0710008D09Rik|AL022707|Uqcr	ubiquinol-cytochrome c reductase, complex III subunit XI	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55491586-3	chr14	55491490	55491690	+	825.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155104, intron 1 of 38)	intron (NR_155104, intron 1 of 38)	520.0	NR_155104	268747.0	Mm.151577	NM_001024645	ENSMUSG00000022211	Carmil3	Lrrc16b|mFLJ00240	capping protein regulator and myosin 1 linker 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35001946-5	chr17	35001829	35002029	+	936.2999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011690, intron 2 of 29)	intron (NM_011690, intron 2 of 29)	1022.0	NM_011690	22321.0	Mm.28420	NM_011690	ENSMUSG00000007029	Vars	Bat6|D17H6S56E|G7a|Vars2	valyl-tRNA synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-78419094-1	chr2	78418994	78419194	+	663.0	f0_balb.idr	Intergenic	Intergenic	181547.0	NM_177843	329436.0	Mm.235448	NM_177843		Gm14461	A830093M07	predicted gene 14461	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-100600948-2	chr15	100600825	100601025	+	598.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001304965)	promoter-TSS (NM_001304965)	-941.0	NM_001304965	19009.0	Mm.28825	NM_010127	ENSMUSG00000009739	Pou6f1	2310038G18Rik|C79593|Emb|cns-1	POU domain, class 6, transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123068030-3	chr5	123067925	123068125	+	894.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TTTA)n|Simple_repeat|Simple_repeat	-8250.0	NM_001039723	330189.0	Mm.391872	NM_001039723	ENSMUSG00000054434	Tmem120b	-	transmembrane protein 120B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-19968197-2	chr4	19968117	19968317	+	763.25	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	37522.0	NR_040768	74988.0	Mm.445292	NR_040768		4930480G23Rik	-	RIKEN cDNA 4930480G23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78330813-2	chr15	78330713	78330913	+	778.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358854, intron 2 of 14)	B4|SINE|B4	4823.0	NM_007780	12983.0	Mm.235324	NM_007780	ENSMUSG00000071713	Csf2rb	AI848964|AIC2B|Bc|CDw131|Csf2rb1|Csfgmrb|Il3r|Il3rb|Il3rb1|Il5rb	colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91954008-3	chr2	91953841	91954041	+	911.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138306, intron 1 of 30)	intron (NM_138306, intron 1 of 30)	-3593.0	NM_001166597	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-81785333-2	chr13	81785233	81785433	+	553.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007684, intron 2 of 4)	B4A|SINE|B4	2086.0	NM_007684	12626.0	Mm.12481	NM_007684	ENSMUSG00000021537	Cetn3	MmCEN3	centrin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-78256192-3	chr4	78255993	78256193	+	864.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44198.0	NM_011211	19266.0	Mm.184021	NM_011211	ENSMUSG00000028399	Ptprd	1110002J03Rik|3000002J10Rik|B230219D21Rik|R-PTP-delta	protein tyrosine phosphatase, receptor type, D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-80582754-4	chr15	80582654	80582854	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289442, intron 1 of 7)	L3|LINE|CR1	10157.0	NM_001289442	17444.0	Mm.12947	NM_010815	ENSMUSG00000042351	Grap2	GRAP-2|GRB2L|GRBLG|GRID|Gads|GrbX|Grf40|GrpL|Mona|P38	GRB2-related adaptor protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-60940217-2	chr9	60940117	60940317	+	639.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-76852.0	NR_040767	330956.0	Mm.207985	NR_040767	ENSMUSG00000111290	Gm5122	A430102L10	predicted gene 5122	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-15973212-1	chr10	15973112	15973312	+	555.0	f1_c57bl6.idr	Intergenic	RMER17B2|LTR|ERVK	181435.0	NR_131087	77538.0	Mm.128235	NR_131087	ENSMUSG00000112227	C330004P14Rik	-	RIKEN cDNA C330004P14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141638835-2	chr7	141638735	141638935	+	938.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001330001, intron 31 of 33)	intron (NM_001330001, intron 31 of 33)	16484.0	NM_001330001	353328.0	Mm.246621	NM_181729	ENSMUSG00000048191	Muc6	-	mucin 6, gastric	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10946491-2	chr19	10946391	10946591	+	711.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023731, intron 1 of 3)	intron (NM_023731, intron 1 of 3)	2775.0	NM_023731	108673.0	Mm.294908	NM_023731	ENSMUSG00000024732	Ccdc86	4933411H20Rik|6720480F16Rik|D19Ertd678e	coiled-coil domain containing 86	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117406697-3	chr8	117406606	117406806	+	868.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028941, intron 3 of 20)	intron (NM_028941, intron 3 of 20)	-46317.0	NR_106045	102466801.0		NR_106045	ENSMUSG00000099062	Mir7077	Gm27774|mmu-mir-7077	microRNA 7077	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-97931715-4	chr3	97931600	97931800	+	910.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033779, intron 1 of 1)	intron (NM_001033779, intron 1 of 1)	1527.0	NM_001033779	433632.0	Mm.212421	NM_001033779		Gm5544	EG433632	predicted gene 5544	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-59207385-2	chr5	59207285	59207485	+	713.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	-754387.0	NR_046190	78163.0	Mm.243828	NR_046190	ENSMUSG00000105234	4930459L07Rik	-	RIKEN cDNA 4930459L07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-139979151-4	chr7	139979047	139979247	+	891.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347613)	promoter-TSS (NM_001347613)	-392.0	NM_001347613	381933.0	Mm.440431	NM_001033465	ENSMUSG00000073795	6430531B16Rik	Gm1093	RIKEN cDNA 6430531B16 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117840156-2	chr10	117840056	117840256	+	775.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_024457, intron 1 of 7)	intron (NM_024457, intron 1 of 7)	5818.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-85119706-2	chr8	85119595	85119795	+	828.375	f0_balb.idr|f1_balb.idr	promoter-TSS (NM_001357366)	promoter-TSS (NM_001357366)	-4.0	NM_001357366	244556.0	Mm.334682	NM_001037745	ENSMUSG00000074194	Zfp791	EG244556	zinc finger protein 791	protein-coding	2.80566709729152	1.39905892260076	2.13812492762581	2.07924626402012	2.76882379499906	2.22745468426185	2.15455822691637	2.21717745268222	0.345198959491996	0.7052037658784	0.998431161219273
Merged-chr10-79775338-2	chr10	79775238	79775438	+	583.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 3 of 4)	intron (NR_038088, intron 3 of 4)	-1936.0	NM_031380	83554.0	Mm.251710	NM_031380	ENSMUSG00000020325	Fstl3	E030038F23Rik|Flrg	follistatin-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-47531778-2	chr9	47531678	47531878	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	CpG	1426.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55700361-2	chr19	55700268	55700468	+	790.166626	f1_balb.idr|f1_c57bl6.idr	intron (NR_045318, intron 1 of 3)	intron (NR_045318, intron 1 of 3)	1836.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	0.297230920852483	0.964962631901815	0.313199165165309	0.307216293532563	0.987904764353312	0.976616925802781	0.314905213680979	0.485644512549918	1.23715990248197	0.5122742180851	1
Merged-chr5-140845011-3	chr5	140844902	140845102	+	674.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14571.0	NM_010302	14673.0	Mm.370185	NM_010302	ENSMUSG00000000149	Gna12	AI414047|AI504261|Galpha12	guanine nucleotide binding protein, alpha 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-89405150-3	chr7	89405069	89405269	+	939.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360746)	promoter-TSS (NM_001360746)	803.0	NM_008055	14366.0	Mm.86755	NM_008055	ENSMUSG00000049791	Fzd4	Fz4	frizzled class receptor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-91366962-2	chr1	91366862	91367062	+	646.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173395, intron 1 of 7)	intron (NM_173395, intron 1 of 7)	532.0	NM_173395	227358.0	Mm.389157	NM_173395	ENSMUSG00000047443	Erfe	4832406C22|Fam132b|myonectin	erythroferrone	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-3707380-2	chr2	3707280	3707480	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6078.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-40640604-1	chr19	40640504	40640704	+	776.0	f1_balb.idr	intron (NM_001304721, intron 1 of 9)	intron (NM_001304721, intron 1 of 9)	-19166.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	2.78527084596703	2.26865992806493	3.01830862098126	2.65542045165011	2.63637698981899	3.22828451203855	1.52990870010886	3.02920715839566	0.0829017858216732	0.917249826169138	0.998431161219273
Merged-chr2-157561365-4	chr2	157561250	157561450	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010923, intron 2 of 2)	intron (NM_010923, intron 2 of 2)	1272.0	NM_180960	18111.0	Mm.34330	NM_010923	ENSMUSG00000067786	Nnat	5730414I02Rik|AW107673|Peg5	neuronatin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-74842693-2	chr11	74842593	74842793	+	746.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_010813, exon 6 of 6)	exon (NM_010813, exon 6 of 6)	11769.0	NM_010813	17428.0	Mm.3759	NM_010813	ENSMUSG00000000282	Mnt	Rox|bHLHd3	max binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-64745806-2	chr8	64745706	64745906	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178633, intron 13 of 14)	intron (NM_178633, intron 13 of 14)	-12228.0	NM_025436	66234.0	Mm.30119	NM_025436	ENSMUSG00000031604	Msmo1	1500001G16Rik|C78600|DESP4|ERG25|Sc4mol	methylsterol monoxygenase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45465160-2	chr7	45465060	45465260	+	644.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_007527, intron 4 of 5)	intron (NM_007527, intron 4 of 5)	1738.0	NM_007527	12028.0	Mm.19904	NM_007527	ENSMUSG00000003873	Bax	-	BCL2-associated X protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-80949253-4	chr13	80949155	80949355	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_103550)	TTS (NR_103550)	8852.0	NR_103550	71416.0	Mm.415500	NR_103550		5430425K12Rik	-	RIKEN cDNA 5430425K12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-37514415-2	chr13	37514315	37514515	+	987.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	169070.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3869354-2	chr12	3869254	3869454	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007872, intron 4 of 22)	intron (NM_007872, intron 4 of 22)	-7110.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-96413989-1	chr11	96413889	96414089	+	1000.0	f0_balb.idr	Intergenic	Intergenic	48231.0	NM_008266	15407.0	Mm.890	NM_008266	ENSMUSG00000018973	Hoxb1	Hox-2.9	homeobox B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-84873144-2	chr1	84873044	84873244	+	567.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025386, intron 1 of 3)	intron (NM_025386, intron 1 of 3)	33303.0	NM_025386	66153.0	Mm.381192	NM_025386	ENSMUSG00000073633	Fbxo36	0610008D19Rik|1110020F21Rik|2410002G19Rik|D1Ertd757e	F-box protein 36	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-45889200-2	chr1	45889100	45889300	+	860.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36394.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-118508113-2	chr3	118508013	118508213	+	598.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54067.0	NM_170778	99586.0	Mm.27907	NM_170778	ENSMUSG00000033308	Dpyd	AI315208|DHPDHase|DPD|E330028L06Rik	dihydropyrimidine dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-128166349-4	chr8	128166251	128166451	+	999.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	111874.0	NR_105822	102465212.0		NR_105822	ENSMUSG00000099326	Mir21c	Gm28013|mmu-mir-21c	microRNA 21c	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-90137769-3	chr7	90137632	90137832	+	629.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360867, intron 1 of 19)	B3A|SINE|B2	7519.0	NM_001252520	233489.0	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-120591664-4	chr9	120591568	120591768	+	730.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	14337.0	NR_073359	76100.0	Mm.48212	NR_073359	ENSMUSG00000052658	5830454E08Rik	-	RIKEN cDNA 5830454E08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53154988-4	chr4	53154884	53155084	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 1 of 49)	intron (NM_013454, intron 1 of 49)	4911.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-45544331-4	chr19	45544260	45544460	+	825.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16204.0	NM_001330506	56626.0	Mm.46509	NM_020032	ENSMUSG00000025218	Poll	1110003P06Rik|AV007317	polymerase (DNA directed), lambda	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-130049149-2	chr2	130049049	130049249	+	754.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009374, exon 13 of 13)	3' UTR (NM_009374, exon 13 of 13)	-32741.0	NR_105757	102466628.0		NR_105757	ENSMUSG00000098347	Mir6339	Gm27848|mmu-mir-6339	microRNA 6339	ncRNA	-0.778082596538266	-1.01822870734921	-1.02945680142399	-1.03348344941628	-0.568232152040811	-1.01579553252409	-1.02691500703827	-1.0331489920742	0.87297571659195	0.788523652777195	1
Merged-chr2-104589798-2	chr2	104589699	104589899	+	696.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177253)	promoter-TSS (NM_177253)	-685.0	NM_177253	228410.0	Mm.259876	NM_145529	ENSMUSG00000027176	Cstf3	4732468G05Rik|C79532|CstF-77	cleavage stimulation factor, 3' pre-RNA, subunit 3	protein-coding	-0.956301058110193	-1.08048890858279	-0.5174261912062	-1.09930773882016	-1.10219358621719	-1.07801123589871	-1.08933406316978	-1.09895072249566	-2.74712229718365	0.3868203743293	1
Merged-chr4-145289385-1	chr4	145289285	145289485	+	557.0	f1_c57bl6.idr	intron (NM_009401, intron 6 of 12)	RLTR13D5|LTR|ERVK	25762.0	NM_009401	21941.0	Mm.12810	NM_009401	ENSMUSG00000028602	Tnfrsf8	Cd30|D1S166E|Ki|Ki-1	tumor necrosis factor receptor superfamily, member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-136194786-2	chr5	136194686	136194886	+	552.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025774, intron 2 of 5)	PB1D10|SINE|Alu	4168.0	NM_025774	66801.0	Mm.425295	NM_025774	ENSMUSG00000039737	Prkrip1	8430424D23Rik|C114	Prkr interacting protein 1 (IL11 inducible)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-130000946-4	chr5	130000861	130001061	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357027, intron 1 of 2)	intron (NM_001357027, intron 1 of 2)	2088.0	NM_010368	110006.0	Mm.3317	NM_010368	ENSMUSG00000025534	Gusb	AI747421|Gur|Gus|Gus-r|Gus-s|Gus-t|Gus-u|Gut|asd|g	glucuronidase, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-111550389-4	chr8	111550335	111550535	+	954.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168623, intron 1 of 4)	intron (NM_001168623, intron 1 of 4)	12092.0	NM_001168623	170737.0	Mm.271578	NM_133206	ENSMUSG00000033545	Znrf1	B830022L21Rik|Rnf42|Zrfp1|nin283	zinc and ring finger 1	protein-coding	1.36929733639012	1.32223148313535	0.78988996832332	1.45244013058827	1.063247048394	1.01231315522995	1.4063644060332	0.961695702966284	-0.60376836315509	0.64978917486523	0.985422869512088
Merged-chr9-106394870-3	chr9	106394771	106394971	+	990.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26239.0	NM_153459	235584.0	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	0.398537741597189	0.091333725267848	0.237102142086147	0.538657989486022	0.310363765998543	0.0922340874327547	0.0882393808646504	0.34736649213796	-0.990932937044442	0.615418320277277	1
Merged-chr16-78277728-3	chr16	78277611	78277811	+	798.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	BC1_Mm|scRNA|scRNA	-22257.0	NR_045698	100503619.0	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-80067357-1	chr2	80067257	80067457	+	1000.0	f1_c57bl6.idr	intron (NM_001355141, intron 2 of 15)	B2_Mm2|SINE|B2	-28455.0	NM_001355142	18573.0	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-120151201-2	chr6	120151101	120151301	+	620.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016718, intron 1 of 3)	ORR1F|LTR|ERVL-MaLR	-42622.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-84827949-4	chr3	84827852	84828052	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177773, intron 1 of 13)	intron (NM_001177773, intron 1 of 13)	12375.0	NM_001177773	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-23563300-4	chr13	23563191	23563391	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178205)	promoter-TSS (NM_178205)	-926.0	NM_178205	319151.0	Mm.261658	NM_178205	ENSMUSG00000069273	Hist1h3e	H3-f|H3.1	histone cluster 1, H3e	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-51946366-4	chr13	51946274	51946474	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	99699.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100555752-4	chr11	100555670	100555870	+	869.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028918, intron 7 of 11)	ORR1E|LTR|ERVL-MaLR	10138.0	NM_028918	74407.0	Mm.31590	NM_028918	ENSMUSG00000006784	Ttc25	4933404O19Rik	tetratricopeptide repeat domain 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-126713153-4	chr2	126713062	126713262	+	823.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019729, intron 1 of 18)	intron (NM_019729, intron 1 of 18)	5834.0	NM_019729	84092.0	Mm.272629	NM_019729	ENSMUSG00000027363	Usp8	AI574262|AW557536|Ubpy|mKIAA0055	ubiquitin specific peptidase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-65488955-2	chr5	65488859	65489059	+	606.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133697, intron 1 of 4)	intron (NM_133697, intron 1 of 4)	3876.0	NM_133697	68552.0	Mm.10709	NM_133697	ENSMUSG00000037822	Smim14	1110003E01Rik|1700127H04Rik|5430439C17Rik|MAd4	small integral membrane protein 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152809572-2	chr1	152809472	152809672	+	962.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010877, intron 2 of 15)	MTA_Mm|LTR|ERVL-MaLR	9419.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43544329-2	chr4	43544229	43544429	+	638.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_011602, exon 27 of 57)	exon (NM_011602, exon 27 of 57)	18254.0	NM_011602	21894.0	Mm.208601	NM_011602	ENSMUSG00000028465	Tln1	Tln	talin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-105148244-4	chr5	105148146	105148346	+	937.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A0|LTR|ERVL-MaLR	-8660.0	NM_001359080	17472.0	Mm.440525	NM_008620	ENSMUSG00000079363	Gbp4	AW228052|Mag-2|Mpa-2|Mpa2	guanylate binding protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-128891221-4	chr6	128891129	128891329	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001254946)	promoter-TSS (NM_001254946)	-105.0	NM_001254946	232406.0	Mm.30745	NM_001254946	ENSMUSG00000090164	BC035044	-	cDNA sequence BC035044	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140835733-3	chr5	140835633	140835833	+	626.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20C1_MM|LTR|ERVK	-5302.0	NM_010302	14673.0	Mm.370185	NM_010302	ENSMUSG00000000149	Gna12	AI414047|AI504261|Galpha12	guanine nucleotide binding protein, alpha 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-56013508-4	chr7	56013441	56013641	+	736.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153578, intron 1 of 4)	MTD|LTR|ERVL-MaLR	6032.0	NM_153578	233280.0	Mm.389901	NM_153578	ENSMUSG00000047037	Nipa1	1110027G09Rik|A830014A18Rik|FSP3|Spg6	non imprinted in Prader-Willi/Angelman syndrome 1 homolog (human)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-28401876-4	chr2	28401777	28401977	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46064.0	NM_001005420	241289.0	Mm.330095	NM_001005420	ENSMUSG00000035829	Ppp1r26	Gm347|Kiaa0649|mKIAA0649	protein phosphatase 1, regulatory subunit 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102392288-6	chr12	102392215	102392415	+	887.388916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47498.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140741327-2	chr5	140741227	140741427	+	590.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_173405, exon 3 of 8)	exon (NM_173405, exon 3 of 8)	17200.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-24280833-2	chr13	24280733	24280933	+	713.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311122)	promoter-TSS (NM_001311122)	-43.0	NM_026825	68732.0	Mm.211047	NM_026825	ENSMUSG00000021338	Carmil1	1110037D04Rik|AI425970|CARMIL|CARML1|D130057M20|Lrrc16|Lrrc16a	capping protein regulator and myosin 1 linker 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36379503-3	chr18	36379395	36379595	+	873.288879	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081365, intron 2 of 2)	intron (NM_001081365, intron 2 of 2)	30871.0	NM_001081365	66060.0	Mm.272527	NM_001081365	ENSMUSG00000046727	Cystm1	0610010O12Rik	cysteine-rich transmembrane module containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-97789873-2	chr4	97789773	97789973	+	622.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010905, intron 2 of 10)	intron (NM_010905, intron 2 of 10)	12247.0	NM_010905	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-8762112-3	chr10	8762005	8762205	+	848.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 8 of 19)	intron (NM_175155, intron 8 of 19)	123965.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	3.6338715205525	2.92141125764124	1.82917703206173	2.94045827394918	3.52503036063949	2.94347668142667	1.84410262364741	2.95588762002751	-0.0614075849704642	0.937363659203213	0.998431161219273
Merged-chr8-95434001-2	chr8	95433901	95434101	+	614.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008187, intron 1 of 5)	intron (NM_008187, intron 1 of 5)	868.0	NM_008187	14894.0	Mm.2080	NM_008187	ENSMUSG00000031796	Cfap20	2600014O15Rik|AL024127|Gtl3|T10-2A2	cilia and flagella associated protein 20	protein-coding	0.211618157328699	0.852060112065046	0.0670625214115199	0.0616044894329973	0.216370078060707	0.865250767605	0.0686167880449273	0.062560394000298	0.0397356684128157	0.984344387697377	1
Merged-chr19-4168407-2	chr19	4168307	4168507	+	754.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_134148, intron 9 of 9)	intron (NM_134148, intron 9 of 9)	-5024.0	NR_153659	58988.0	Mm.271937	NM_021485	ENSMUSG00000024830	Rps6kb2	S6K-beta-2|S6K2	ribosomal protein S6 kinase, polypeptide 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-13895784-2	chr17	13895684	13895884	+	579.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_151731, intron 30 of 33)	intron (NR_151731, intron 30 of 33)	-52589.0	NM_001122977	635895.0	Mm.388844	NM_001122977	ENSMUSG00000067941	Gm7168	EG635895	predicted gene 7168	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-115900920-4	chr13	115900829	115901029	+	943.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	408759.0	NM_021459	16392.0	Mm.42242	NM_021459	ENSMUSG00000042258	Isl1	-	ISL1 transcription factor, LIM/homeodomain	protein-coding	1.50585117847823	2.34664488759846	2.41035816723947	2.33539366612004	2.46182877762584	3.5488965746861	3.7042319772916	1.60662208361268	1.66624167988757	0.0513293016506907	0.330779107223657
Merged-chr14-114393449-2	chr14	114393349	114393549	+	556.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F|LINE|L1	-438516.0	NR_045661	75822.0	Mm.410813	NR_045661	ENSMUSG00000115320	4930524C18Rik	-	RIKEN cDNA 4930524C18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6374055-2	chr19	6373955	6374155	+	738.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_011750, exon 10 of 13)	exon (NM_011750, exon 10 of 13)	-10353.0	NM_011224	19309.0	Mm.27806	NM_011224	ENSMUSG00000032648	Pygm	AI115133|PG	muscle glycogen phosphorylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-7843634-2	chr9	7843534	7843734	+	553.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1C|Other|Other	-6577.0	NM_007465	11797.0	Mm.335659	NM_007465	ENSMUSG00000057367	Birc2	AW146227|Api1|Api2|Birc3|C-IAP1|C330006D17Rik|HIAP1|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF48|cIAP1|cIAP2|mcIAP1	baculoviral IAP repeat-containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75513502-4	chr11	75513405	75513605	+	972.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001004157)	promoter-TSS (NM_001004157)	-36.0	NM_001004157	380713.0	Mm.10486	NM_001004157	ENSMUSG00000038188	Scarf1	AA986099|SREC|SREC-I|mKIAA0149	scavenger receptor class F, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-149709091-3	chr4	149708996	149709196	+	901.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7467.0	NM_001029837	18707.0	Mm.229108	NM_008840	ENSMUSG00000039936	Pik3cd	2410099E07Rik|2610208K16Rik|AW545373|p110delta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding	1.41426397303545	3.60369147191616	2.57381368165817	1.21920565749235	2.6589562038049	3.09393723877935	1.26795929697204	2.61553081740058	-0.048388699746857	0.962641443632522	0.998431161219273
Merged-chr3-9028118-4	chr3	9028024	9028224	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23401.0	NM_001357075	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	2.83814278220127	2.1415226747169	4.02757050840847	4.35996945413811	4.22807231205028	4.50858043568117	3.25145066222159	3.7474084668823	0.547488355794559	0.379617032734622	0.871899780487614
Merged-chr1-55553576-4	chr1	55553466	55553666	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114663, intron 1 of 5)	intron (NM_001114663, intron 1 of 5)	147620.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-103258437-4	chr15	103258366	103258566	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302341)	promoter-TSS (NM_001302341)	-63.0	NM_001302341	18022.0	Mm.457989	NM_008685	ENSMUSG00000058794	Nfe2	NF-E2|NF-E2/P45|p45|p45NFE2|p45nf-e2	nuclear factor, erythroid derived 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-63438194-4	chr14	63438140	63438340	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177628, intron 1 of 3)	ID_B1|SINE|B4	1846.0	NM_177628	219148.0	Mm.37882	NM_177628	ENSMUSG00000035095	Fam167a	A030013D21	family with sequence similarity 167, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132540407-2	chr4	132540307	132540507	+	598.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172400, intron 2 of 8)	intron (NM_172400, intron 2 of 8)	4848.0	NM_172400	68598.0	Mm.29685	NM_172400	ENSMUSG00000054405	Dnajc8	1110021D09Rik|2010009J04Rik|AL024084|AU019262|AU044514	DnaJ heat shock protein family (Hsp40) member C8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-4366808-2	chr18	4366708	4366908	+	825.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_040328, intron 2 of 3)	intron (NR_040328, intron 2 of 3)	-8784.0	NM_001361008	67440.0	Mm.49826	NM_026157	ENSMUSG00000024234	Mtpap	0610027A18Rik|AW551379|Papd1	mitochondrial poly(A) polymerase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100745869-2	chr11	100745769	100745969	+	571.833374	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081194, exon 13 of 17)	exon (NM_001081194, exon 13 of 17)	-7654.0	NM_001305003	19345.0	Mm.29829	NM_024456	ENSMUSG00000019173	Rab5c	AI326010|Rabl	RAB5C, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117946766-4	chr11	117946669	117946869	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22597.0	NM_007707	12702.0	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-72807226-2	chr9	72807126	72807326	+	620.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175485)	promoter-TSS (NM_175485)	-48.0	NM_175485	235472.0	Mm.31696	NM_175485	ENSMUSG00000036030	Prtg	A230098A12Rik|Igdcc5	protogenin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-63862356-2	chr7	63862256	63862456	+	707.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-54501.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-6383295-4	chr7	6383183	6383383	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175247)	promoter-TSS (NM_175247)	-35.0	NM_175247	22690.0	Mm.127014	NM_175247	ENSMUSG00000062861	Zfp28	2810438M17Rik|Zfp-28|mkr-5	zinc finger protein 28	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-23673644-4	chr17	23673563	23673763	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181821)	promoter-TSS (NM_181821)	55.0	NM_181821	353502.0	Mm.359030	NM_181821	ENSMUSG00000023904	Hcfc1r1	HPIP	host cell factor C1 regulator 1 (XPO1-dependent)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-66797488-2	chr9	66797388	66797588	+	554.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-2065.0	NM_177583	208117.0	Mm.41291	NM_177583	ENSMUSG00000032375	Aph1b	2310057K14Rik|Aph1c	aph1 homolog B, gamma secretase subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-94926623-2	chr9	94926523	94926723	+	566.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177909, intron 6 of 15)	intron (NM_177909, intron 6 of 15)	174794.0	NR_106116	102465763.0		NR_106116	ENSMUSG00000098251	Mir7656	Gm27614|mmu-mir-7656	microRNA 7656	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-40219329-2	chr12	40219229	40219429	+	733.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_013562, intron 1 of 11)	intron (NM_013562, intron 1 of 11)	3482.0	NR_035459	100316693.0		NR_035459	ENSMUSG00000089371	Mir1938	mir-1938|mmu-mir-1938	microRNA 1938	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-73659937-4	chr12	73659826	73660026	+	991.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008856, intron 2 of 13)	intron (NM_008856, intron 2 of 13)	75130.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-143373379-2	chr7	143373279	143373479	+	808.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008434, intron 15 of 15)	intron (NM_008434, intron 15 of 15)	-42729.0	NR_045842	71153.0	Mm.398340	NR_045842	ENSMUSG00000101360	4933417O13Rik	-	RIKEN cDNA 4933417O13 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-12119159-1	chr15	12119059	12119259	+	766.0	f0_balb.idr	intron (NM_001358823, intron 2 of 18)	intron (NM_001358823, intron 2 of 18)	1308.0	NM_001358823	22763.0	Mm.273496	NM_011767	ENSMUSG00000022201	Zfr	C920030H05Rik	zinc finger RNA binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167057813-4	chr2	167057721	167057921	+	963.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033196, intron 2 of 13)	intron (NM_001033196, intron 2 of 13)	-5113.0	NR_138563	68949.0	Mm.391959	NM_001081005		Zfas1	1500012F01Rik|Zfos1	zinc finger, NFX1-type containing 1, antisense RNA 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-84980804-2	chr18	84980704	84980904	+	588.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_015798, intron 9 of 9)	intron (NM_015798, intron 9 of 9)	-29280.0	NM_025969	67105.0	Mm.250617	NM_025969	ENSMUSG00000024645	Timm21	1700034H14Rik|2700002I20Rik	translocase of inner mitochondrial membrane 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-101302274-4	chr4	101302160	101302360	+	931.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36978.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84998037-4	chr8	84997948	84998148	+	989.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001167991, exon 15 of 22)	exon (NM_001167991, exon 15 of 22)	7453.0	NM_001167991	170833.0	Mm.247775	NM_133255	ENSMUSG00000052566	Hook2	A630054I03Rik	hook microtubule tethering protein 2	protein-coding	3.12116031122796	4.21201524960297	3.97126528284497	3.68175049125856	3.23371819521402	4.00470006047985	3.21887448894927	2.5963164973617	-0.66859653293856	0.244609142679097	0.743117950843301
Merged-chr11-83631294-4	chr11	83631174	83631374	+	986.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18104.0	NM_011337	20302.0	Mm.1282	NM_011337	ENSMUSG00000000982	Ccl3	AI323804|G0S19-1|LD78alpha|MIP-1alpha|MIP1-(a)|MIP1-alpha|Mip1a|Scya3	chemokine (C-C motif) ligand 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133190990-4	chr4	133190883	133191083	+	813.7071530000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153423, intron 6 of 8)	intron (NM_153423, intron 6 of 8)	-4672.0	NR_105984	102466215.0		NR_105984	ENSMUSG00000099202	Mir7017	Gm27945|mmu-mir-7017	microRNA 7017	ncRNA	0.953841635685682	0.329033402929448	0.322081345819329	0.482648821982108	0.584212685507312	0.956270773372794	0.658167925014465	0.317646328333627	0.542885831305517	0.76110835543365	1
Merged-chr17-5756266-2	chr17	5756166	5756366	+	950.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42391.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-31655660-2	chr17	31655513	31655713	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_024187, intron 1 of 7)	intron (NM_024187, intron 1 of 7)	3141.0	NM_024187	108121.0	Mm.379289	NM_024187	ENSMUSG00000061613	U2af1	2010107D16Rik	U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-110499390-1	chr12	110499290	110499490	+	552.0	f0_balb.idr	intron (NM_001081457, intron 1 of 12)	intron (NM_001081457, intron 1 of 12)	13651.0	NM_012023	26931.0	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34120491-4	chr17	34120383	34120583	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_037970)	promoter-TSS (NR_037970)	-583.0	NR_037970	14312.0	Mm.3444	NM_010238	ENSMUSG00000024335	Brd2	AW228947|D17H6S113E|Frg-1|Fsrg-1|Fsrg1|Nat|Ring3|Rnf3|mKIAA4005	bromodomain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-59558372-2	chr11	59558272	59558472	+	637.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_153314, intron 6 of 9)	intron (NR_153314, intron 6 of 9)	13366.0	NM_001011789	257962.0	Mm.377316	NM_001011789	ENSMUSG00000059610	Olfr222	MOR256-45P	olfactory receptor 222	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80076799-1	chr7	80076699	80076899	+	595.0	f1_balb.idr	intron (NM_175433, intron 1 of 4)	intron (NM_175433, intron 1 of 4)	-1542.0	NR_045695	100859962.0	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	0.53248195004015	0.56363790362499	1.17448317246626	0.882199710171104	0.959762240411557	0.565897231997406	0.921102678720341	1.50363670695017	1.03644952313675	0.51687017016318	0.947641799425091
Merged-chr10-63153821-3	chr10	63153710	63153910	+	890.5277710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_182992, intron 6 of 19)	intron (NM_182992, intron 6 of 19)	50142.0	NM_182992	68802.0	Mm.259767	NM_182992	ENSMUSG00000020067	Mypn	1110056A04Rik|9830112J03|AI853556|mKIAA4170	myopalladin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-53158353-4	chr18	53158223	53158423	+	582.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17969.0	NM_001357463	67804.0	Mm.252171	NM_026386	ENSMUSG00000034484	Snx2	0610030A03Rik	sorting nexin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-59964986-3	chr11	59964885	59965085	+	910.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009026)	promoter-TSS (NM_009026)	-41.0	NM_009026	19416.0	Mm.3903	NM_009026	ENSMUSG00000049892	Rasd1	Dexras1	RAS, dexamethasone-induced 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-34253801-2	chr10	34253701	34253901	+	842.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-28389.0	NM_009433	22110.0	Mm.20445	NM_009433	ENSMUSG00000047514	Tspyl1	Tspyl	testis-specific protein, Y-encoded-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19071176-2	chr7	19071076	19071276	+	708.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_031255, intron 5 of 5)	B2_Mm2|SINE|B2	-5024.0	NM_010058	13401.0	Mm.2852	NM_010058	ENSMUSG00000030410	Dmwd	DMR-N9|Dm9	dystrophia myotonica-containing WD repeat motif	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-16571540-4	chr16	16571439	16571639	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301817, intron 1 of 16)	intron (NM_001301817, intron 1 of 16)	-11320.0	NM_139232	224014.0	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-128727932-4	chr4	128727827	128728027	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195083, intron 1 of 6)	CpG	356.0	NM_001195083	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-67302113-4	chr5	67301982	67302182	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4873.0	NM_178651	109108.0	Mm.234455	NM_178651	ENSMUSG00000029221	Slc30a9	2310024J23Rik|AL024256|GAC63|HUEL|znT-9	solute carrier family 30 (zinc transporter), member 9	protein-coding	5.46078011170726	5.50191624493537	4.90715393809403	5.247318141537	4.28174884589429	4.77513083545815	4.77069217270501	3.93856415974395	-0.993127905063753	0.00427721683747056	0.0591676183120351
Merged-chr3-79531869-4	chr3	79531730	79531930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162999, intron 1 of 16)	intron (NM_001162999, intron 1 of 16)	35849.0	NM_001162999	329679.0	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-35026032-1	chr9	35025932	35026132	+	603.0	f1_balb.idr	intron (NM_001190912, intron 12 of 15)	intron (NM_001190912, intron 12 of 15)	-90696.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-142374688-2	chr7	142374591	142374791	+	754.166687	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347541)	promoter-TSS (NM_001347541)	-945.0	NM_001347541	320802.0	Mm.154486	NM_177265	ENSMUSG00000045777	Ifitm10	6330512M04Rik|AI848576|DSPA3	interferon induced transmembrane protein 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-8877322-1	chr5	8877222	8877422	+	852.0	f0_balb.idr	Intergenic	Intergenic	-16399.0	NM_008830	18670.0	Mm.297825	NM_008830	ENSMUSG00000042476	Abcb4	Mdr2|Pgy-2|Pgy2|mdr-2	ATP-binding cassette, sub-family B (MDR/TAP), member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81872397-4	chr15	81872324	81872524	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080633)	promoter-TSS (NM_080633)	-39.0	NM_080633	11429.0	Mm.154581	NM_080633	ENSMUSG00000022477	Aco2	Aco-2|Aco3|D10Wsu183e	aconitase 2, mitochondrial	protein-coding	3.5063681541178	3.64487271646893	2.83860434186552	1.58685827306754	3.96919416541066	2.48291212877339	3.75855674921336	3.64700959297048	0.725943121126766	0.30954852246784	0.810319237651449
Merged-chr14-120244880-4	chr14	120244784	120244984	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30785.0	NM_207515	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33075192-3	chr16	33075090	33075290	+	660.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172823, intron 6 of 16)	MTEb|LTR|ERVL-MaLR	12669.0	NM_172823	239833.0	Mm.131951	NM_172823	ENSMUSG00000022802	Lmln	5330415H22Rik|AI465495	leishmanolysin-like (metallopeptidase M8 family)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-95508988-4	chr10	95508898	95509098	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6164.0	NM_080560	93765.0	Mm.371667	NM_080560	ENSMUSG00000074781	Ube2n	1500026J17Rik|AL022654|BB101821|UBC13	ubiquitin-conjugating enzyme E2N	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-43354123-2	chr7	43354023	43354223	+	610.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145581, intron 5 of 9)	ID_B1|SINE|B4	2782.0	NM_145581	233186.0	Mm.290569	NM_145581	ENSMUSG00000039013	Siglecf	Siglec5|mSiglec-F	sialic acid binding Ig-like lectin F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-3018357-2	chr9	3018258	3018458	+	859.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	GSAT_MM|Satellite|Satellite	20385.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-73634935-2	chr15	73634835	73635035	+	862.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10191.0	NM_001033219	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-47146511-3	chr7	47146417	47146617	+	875.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12833.0	NM_013643	19259.0	Mm.4654	NM_013643	ENSMUSG00000030854	Ptpn5	Step	protein tyrosine phosphatase, non-receptor type 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-29563672-3	chr19	29563601	29563801	+	912.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081319, intron 4 of 25)	intron (NM_001081319, intron 4 of 25)	41419.0	NM_001081319	226089.0	Mm.353838	NM_177641	ENSMUSG00000038658	Ric1	C030046E11Rik|C130057E09Rik|Kiaa1432	RAB6A GEF complex partner 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-48844340-4	chr2	48844215	48844415	+	829.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007396, intron 1 of 10)	intron (NM_007396, intron 1 of 10)	30206.0	NM_007396	11480.0	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47526791-3	chr17	47526695	47526895	+	621.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081635, intron 1 of 6)	intron (NM_001081635, intron 1 of 6)	21744.0	NM_001081635	12445.0	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-113494607-4	chr6	113494447	113494647	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172487, exon 4 of 4)	exon (NM_172487, exon 4 of 4)	7271.0	NM_172487	210673.0	Mm.133060	NM_172487	ENSMUSG00000045009	Prrt3	6330505P20|B230206N24Rik	proline-rich transmembrane protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-107986654-1	chr5	107986554	107986754	+	1000.0	f0_c57.idr	intron (NM_026062, intron 1 of 4)	intron (NM_026062, intron 1 of 4)	423.0	NM_026062	67266.0	Mm.277897	NM_026062	ENSMUSG00000029270	Fam69a	2900024C23Rik|AI315274	family with sequence similarity 69, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-92985083-7	chr7	92984967	92985167	+	986.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-94812.0	NM_021427	58238.0	Mm.113787	NM_021427	ENSMUSG00000051515	Fam181b	A830059I20Rik|AB041569	family with sequence similarity 181, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-67029596-2	chr6	67029496	67029696	+	876.8333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7003.0	NR_040278	320172.0	Mm.449039	NR_040278	ENSMUSG00000087231	E230016M11Rik	-	RIKEN cDNA E230016M11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-57762118-2	chr15	57762018	57762218	+	617.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_199449, intron 1 of 3)	intron (NM_199449, intron 1 of 3)	67451.0	NM_199449	387609.0	Mm.36557	NM_199449	ENSMUSG00000071757	Zhx2	Afr-1|Afr1|Raf|mKIAA0854	zinc fingers and homeoboxes 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-132263072-4	chr2	132262983	132263183	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138651)	promoter-TSS (NM_138651)	-65.0	NM_001291040	110911.0	Mm.284503	NM_138651	ENSMUSG00000058793	Cds2	5730450N06Rik|5730460C18Rik|AI854580|D2Wsu127e	CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-43266559-1	chr13	43266459	43266659	+	712.0	f0_balb.idr	intron (NM_001033399, intron 1 of 1)	L1_Mur3|LINE|L1	37613.0	NM_001033399	328232.0	Mm.441399	NM_001033399	ENSMUSG00000051335	Gfod1	9630032O13|AI850995	glucose-fructose oxidoreductase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141721187-2	chr4	141721020	141721220	+	738.0	f0_balb.idr|f1_balb.idr	intron (NM_001017966, intron 1 of 9)	intron (NM_001017966, intron 1 of 9)	2299.0	NM_001017966	68817.0	Mm.393721	NM_001017966	ENSMUSG00000078515	Ddi2	1110056G13Rik|1700027M01Rik|9130022E05Rik|AI604911|AU040698	DNA-damage inducible protein 2	protein-coding	0.841590935625146	0.482516753928543	0.274967054986141	0.269394782132585	1.08499885204928	0.283778606847688	0.276556439725072	0.716806742574522	0.865710320751969	0.651860255881963	1
Merged-chr10-34194228-2	chr10	34194128	34194328	+	721.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172508, intron 1 of 5)	B1F2|SINE|Alu	13323.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-124620661-4	chr2	124620547	124620747	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291000, intron 1 of 18)	intron (NM_001291000, intron 1 of 18)	10351.0	NM_172537	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-5779593-4	chr13	5779483	5779683	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	78509.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-80076462-1	chr15	80076362	80076562	+	662.333313	f0_balb.idr	Intergenic	Intergenic	2117.0	NR_028282	100302601.0		NR_028282	ENSMUSG00000077734	Snord83b	MBII-10	small nucleolar RNA, C/D box 83B	snoRNA	1.90279311465044	2.35443462431762	1.44790379987354	1.75077816845233	2.27396811826588	1.6999653493724	1.45673907575506	2.30890746771319	0.237191988176033	0.81288352685845	0.998431161219273
Merged-chr8-83169941-4	chr8	83169866	83170066	+	915.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111304, intron 1 of 20)	intron (NM_001111304, intron 1 of 20)	4614.0	NM_027758	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	2.88170334904602	3.58869439930528	3.93106645324603	3.75860716119093	3.0181569605265	4.38289014958342	4.14188897904984	4.22711103009303	0.627678135063549	0.239916077006026	0.736540734959326
Merged-chr11-80159025-3	chr11	80158878	80159078	+	652.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172133, intron 3 of 10)	intron (NM_172133, intron 3 of 10)	4816.0	NM_172133	216991.0	Mm.341520	NM_172133	ENSMUSG00000020709	Adap2	Centa2	ArfGAP with dual PH domains 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-31299351-2	chr2	31299251	31299451	+	813.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53428.0	NM_019681	14299.0	Mm.249318	NM_019681	ENSMUSG00000062661	Ncs1	9430075O15Rik|A730032G13Rik|AI836659|Freq|Mfreq|NCS-1	neuronal calcium sensor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-97229409-2	chr3	97229309	97229509	+	854.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-2045.0	NM_029933	77578.0	Mm.226175	NM_029933	ENSMUSG00000038256	Bcl9	2610202E01Rik|8030475K17Rik|A330041G23Rik|Gm130	B cell CLL/lymphoma 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-126836880-4	chr6	126836826	126837026	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025358, intron 5 of 10)	RMER6BA|LTR|ERVK	12218.0	NM_025358	66108.0	Mm.29939	NM_025358	ENSMUSG00000000399	Ndufa9	1010001N11Rik	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 9	protein-coding	2.91892840347762	2.9474583078803	1.9719098259104	2.36699203574881	2.37855034512473	2.39384648165149	2.78149190911434	2.37883579023135	-0.264598592527842	0.733302561534774	0.998431161219273
Merged-chr5-29947491-4	chr5	29947389	29947589	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65625.0	NM_001314054	16193.0	Mm.1019	NM_031168	ENSMUSG00000025746	Il6	Il-6	interleukin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-64871995-2	chr16	64871895	64872095	+	599.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	19994.0	NM_178647	106143.0	Mm.10160	NM_178647	ENSMUSG00000054604	Cggbp1	AA960172|AL023996|AW045841	CGG triplet repeat binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-77627712-4	chr10	77627615	77627815	+	928.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019803, intron 1 of 5)	intron (NM_019803, intron 1 of 5)	5394.0	NM_019803	22213.0	Mm.458125	NM_019803	ENSMUSG00000009293	Ube2g2	1110003O05Rik|D10Xrf369|UBC7|Ubc7p	ubiquitin-conjugating enzyme E2G 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-110810890-2	chr7	110810790	110810990	+	582.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001276301, exon 15 of 15)	exon (NM_001276301, exon 15 of 15)	33491.0	NM_025999	67150.0	Mm.96867	NM_025999	ENSMUSG00000030788	Rnf141	2610110L04Rik|AA792898|AU022812|ZFP36|ZNF230	ring finger protein 141	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81802574-4	chr15	81802471	81802671	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153484)	promoter-TSS (NM_153484)	42.0	NR_155271	100504312.0	Mm.384036	NR_155271	ENSMUSG00000097613	Gm17597	-	predicted gene, 17597	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-64092319-4	chr9	64092233	64092433	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11572.0	NR_040743	76814.0	Mm.243771	NR_040743		Scarletltr	2600006L11Rik	Scarletltr, erythroid developmental long intergenic non-protein coding transcript	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123829991-4	chr5	123829894	123830094	+	852.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35522.0	NM_030701	80885.0	Mm.440567	NM_030701	ENSMUSG00000045502	Hcar2	Gpr109a|Gpr109b|HM74|Niacr1|PUMA-G|Pumag|mHM74b	hydroxycarboxylic acid receptor 2	protein-coding	3.22678764041274	3.93965249407784	2.05868201476744	3.81390577794948	3.50014040852972	1.90507725217884	1.53349405952437	3.48937323018028	-0.842969414417077	0.304409559995018	0.806001593337822
Merged-chr14-73383610-3	chr14	73383490	73383690	+	863.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008410, intron 1 of 5)	PB1D10|SINE|Alu	1699.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-89864886-4	chr16	89864757	89864957	+	868.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009384, intron 8 of 27)	intron (NM_009384, intron 8 of 27)	-46505.0	NM_001145887	21844.0	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100434027-4	chr7	100433939	100434139	+	922.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001017985, intron 23 of 32)	intron (NM_001017985, intron 23 of 32)	-38952.0	NM_009464	22229.0	Mm.6254	NM_009464	ENSMUSG00000032942	Ucp3	AI645527|Slc25a9|UCP-3	uncoupling protein 3 (mitochondrial, proton carrier)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-8858879-4	chr10	8858758	8858958	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 1 of 19)	intron (NM_175155, intron 1 of 19)	27212.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	4.12335279213895	4.93452234103682	5.53453140670208	5.01254681984056	5.15285157210254	5.70109669063689	5.21124980772582	5.55227259558163	0.512073761460972	0.137455549698907	0.577987740170847
Merged-chr12-17724718-3	chr12	17724632	17724832	+	782.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016677, intron 1 of 3)	intron (NM_016677, intron 1 of 3)	33923.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	1.73648964687123	1.3404571677731	2.17139372265852	1.59174762507284	1.64550233780098	1.11468203350927	1.78161999815493	1.84022002423391	-0.386517451813834	0.727504424436236	0.998431161219273
Merged-chr5-99244331-3	chr5	99244207	99244407	+	962.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181318, intron 1 of 13)	B1_Mur3|SINE|Alu	8620.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99129235-2	chr7	99129135	99129335	+	819.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 1 of 14)	intron (NM_178635, intron 1 of 14)	11909.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-37674875-1	chr15	37674775	37674975	+	555.0	f0_c57.idr	intron (NM_001359841, intron 1 of 7)	intron (NM_001359841, intron 1 of 7)	5699.0	NM_001359840	52589.0	Mm.283370	NM_134094	ENSMUSG00000051359	Ncald	AI848120|D030020D09Rik|D15Ertd412e	neurocalcin delta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-193160510-4	chr1	193160415	193160615	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016851, intron 2 of 7)	intron (NM_016851, intron 2 of 7)	7403.0	NM_016851	54139.0	Mm.273695	NM_016851	ENSMUSG00000026638	Irf6	AI876454|E230028I05Rik|mirf6	interferon regulatory factor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-67359880-3	chr1	67359747	67359947	+	785.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	236820.0	NM_001080809	227231.0	Mm.343942	NM_001080809	ENSMUSG00000025991	Cps1	4732433M03Rik|CPS|D1Ucla3	carbamoyl-phosphate synthetase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70619836-2	chr8	70619736	70619936	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153074, intron 2 of 2)	IMPB_01|Satellite|Satellite	2992.0	NM_153074	211228.0	Mm.132939	NM_153074	ENSMUSG00000049988	Lrrc25	Mapa	leucine rich repeat containing 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-145294880-2	chr7	145294780	145294980	+	656.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6029.0	NM_145379	211577.0	Mm.215151	NM_145379	ENSMUSG00000031070	Mrgprf	BC019711|Mgrc|MrgF	MAS-related GPR, member F	protein-coding	-2.18292257394068	-2.15545247547656	-2.03304972317742	-2.17058342868585	-2.18099422382073	-2.1536522739386	-2.16187909550322	-2.16936197735154	-0.683654500252594	0.846597994014493	1
Merged-chr15-89377609-2	chr15	89377509	89377709	+	702.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138302)	promoter-TSS (NM_138302)	-573.0	NM_138302	72962.0	Mm.287977	NM_138302	ENSMUSG00000022615	Tymp	2900072D10Rik|Ecgf1|PD-ECGF|PDECGF|Pdgfec|TP	thymidine phosphorylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-139288305-3	chr4	139288229	139288429	+	842.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009798, intron 8 of 8)	intron (NM_009798, intron 8 of 8)	22379.0	NR_151463	212555.0	Mm.45131	NM_145384	ENSMUSG00000028744	Pqlc2	BC019216	PQ loop repeat containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-72268411-2	chr5	72268311	72268511	+	555.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_003966, intron 14 of 22)	MER5B|DNA|hAT-Charlie	65068.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-17392062-4	chr17	17392024	17392224	+	860.712524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025934, intron 9 of 9)	intron (NM_025934, intron 9 of 9)	-10562.0	NM_025681	66643.0	Mm.268018	NM_025681	ENSMUSG00000047786	Lix1	5730466L18Rik	limb and CNS expressed 1	protein-coding	3.58689242838376	1.70524452218979	3.38281435833766	2.17746005177333	3.08659678790532	2.35197235431173	1.36763410335553	2.02360363872133	-1.06723972944858	0.242224355733996	0.739349184581178
Merged-chr4-45940303-6	chr4	45940244	45940444	+	864.819458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198660, intron 30 of 37)	intron (NM_198660, intron 30 of 37)	-24991.0	NM_001290475	100121.0	Mm.275413	NM_146142	ENSMUSG00000035517	Tdrd7	5730495N10Rik|AI447470|PCTAIRE2BP	tudor domain containing 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-101665445-4	chr2	101665343	101665543	+	966.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12977.0	NM_009424	22034.0	Mm.292729	NM_009424	ENSMUSG00000027164	Traf6	2310003F17Rik|AI851288|C630032O20Rik	TNF receptor-associated factor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-97657356-4	chr1	97657257	97657457	+	803.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133825, intron 1 of 2)	MTC|LTR|ERVL-MaLR	4319.0	NM_001355074	52392.0	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131560863-7	chr1	131560783	131560983	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	32980.0	NM_175382	108900.0	Mm.31278	NM_175382	ENSMUSG00000055184	Fam72a	2700049P18Rik|P17	family with sequence similarity 72, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-5805290-2	chr18	5805147	5805347	+	770.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	212600.0	NM_001360981	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	-0.488970785066387	0.0347853733830317	0.212306112210567	-0.483509966098567	-0.488157670485729	-0.475019838280597	-0.479288456586577	-0.482936011841752	-3.56153365247441	0.182523355830859	1
Merged-chr12-101758847-4	chr12	101758770	101758970	+	983.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361987, intron 9 of 10)	intron (NM_001361987, intron 9 of 10)	-40347.0	NM_001082976	74413.0	Mm.275939	NM_028924	ENSMUSG00000021187	Tc2n	4933406D09Rik|Mtac2d1|Tac2-N	tandem C2 domains, nuclear	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117460527-2	chr8	117460427	117460627	+	656.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001163262, exon 21 of 21)	3' UTR (NM_001163262, exon 21 of 21)	1262.0	NR_106046	102465653.0		NR_106046	ENSMUSG00000098483	Mir7078	Gm27386|mmu-mir-7078	microRNA 7078	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-88065300-4	chr6	88065181	88065381	+	890.3583369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19192.0	NM_133933	103963.0	Mm.188544	NM_133933	ENSMUSG00000030062	Rpn1	AU018702|D6Wsu137e|Rpn-1	ribophorin I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-95481594-4	chr13	95481510	95481710	+	838.325012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2955.0	NM_001081159	268686.0	Mm.291249	NM_001081159	ENSMUSG00000021679	S100z	Gm625	S100 calcium binding protein, zeta	protein-coding	3.44066056805336	3.6349360392722	2.71071774067095	3.7357651665679	3.78234968503901	3.41101162461019	2.20912180955262	2.49584336526549	-0.467975386442725	0.481208939175333	0.929210758613564
Merged-chr3-27600870-4	chr3	27600754	27600954	+	982.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356953, intron 4 of 26)	intron (NM_001356953, intron 4 of 26)	-15859.0	NR_037275	100526525.0		NR_037275	ENSMUSG00000092695	Mir3092	mir-3092|mmu-mir-3092	microRNA 3092	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150029872-1	chr4	150029772	150029972	+	643.0	f1_c57bl6.idr	Intergenic	Intergenic	-20849.0	NM_173371	100198.0	Mm.22183	NM_173371	ENSMUSG00000028980	H6pd	AI785303|G6pd1|Gpd-1|Gpd1	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	protein-coding	-0.474154012624406	-0.461212416576723	0.00417110364042567	0.268904879260605	-0.473344690433279	-0.460258663459748	-0.464512388852989	-0.468145745912485	-3.57470569826093	0.179763488907087	1
Merged-chr14-25459217-4	chr14	25459123	25459323	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310666)	promoter-TSS (NM_001310666)	38.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46707532-4	chr19	46707523	46707723	+	880.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020577, intron 1 of 10)	intron (NM_020577, intron 1 of 10)	180.0	NM_020577	57344.0	Mm.28566	NM_020577	ENSMUSG00000003559	As3mt	2310045H08Rik|Cyt19	arsenic (+3 oxidation state) methyltransferase	protein-coding	0.221605030936224	-0.487239964750612	-0.49120836588167	-0.494269310236585	-0.498593662273297	-0.486345272178728	-0.490333205032157	-0.0579379631856254	-0.940474356705701	0.734885036005541	1
Merged-chr17-29493811-2	chr17	29493711	29493911	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008842, exon 5 of 6)	exon (NM_008842, exon 5 of 6)	2766.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-130884230-3	chr3	130884184	130884384	+	838.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-153886.0	NM_001005859	68436.0	Mm.140568	NM_026724	ENSMUSG00000062006	Rpl34	1100001I22Rik	ribosomal protein L34	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-113653999-2	chr8	113653899	113654099	+	697.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029139, intron 7 of 11)	intron (NM_029139, intron 7 of 11)	10786.0	NM_001048145	668110.0	Mm.390078	NM_029139	ENSMUSG00000033409	Syce1l	4930481F22Rik|MMRP|PSESS|mmrp2	synaptonemal complex central element protein 1 like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-25613614-2	chr2	25613514	25613714	+	602.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_029859, exon 6 of 14)	exon (NM_029859, exon 6 of 14)	4064.0	NM_029859	77058.0	Mm.478493	NM_029859	ENSMUSG00000026940	Ccdc183	4921530D09Rik|Cccd183|Kiaa1984	coiled-coil domain containing 183	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-26964070-4	chr8	26963987	26964187	+	969.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-13249.0	NM_001101502	353310.0	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-119487343-2	chr13	119487243	119487443	+	564.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039244)	promoter-TSS (NM_001039244)	-696.0	NM_001039244	633640.0	Mm.46679	NM_001039244	ENSMUSG00000074634	Tmem267	EG633640|Gm7120	transmembrane protein 267	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-45903527-2	chr1	45903427	45903627	+	880.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	22067.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-24312348-4	chr10	24312261	24312461	+	910.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	88844.0	NM_021509	59012.0	Mm.285934	NM_021509	ENSMUSG00000020000	Moxd1	3230402N08Rik|MNCb-5203	monooxygenase, DBH-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167780020-2	chr2	167779920	167780120	+	599.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	88843.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129221276-4	chr2	129221164	129221364	+	914.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045838, intron 1 of 4)	intron (NR_045838, intron 1 of 4)	2295.0	NR_045838	329513.0	Mm.473529	NM_177847	ENSMUSG00000056738	A730036I17Rik	-	RIKEN cDNA A730036I17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-12497980-2	chr4	12497880	12498080	+	954.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28|LTR|ERVL	-325965.0	NM_026558	68099.0	Mm.25340	NM_026558	ENSMUSG00000028218	Fam92a	6720467C03Rik|Fam92a1	family with sequence similarity 92, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-37993203-1	chr18	37993103	37993303	+	822.0	f0_balb.idr	intron (NM_139206, intron 4 of 32)	L2|LINE|L2	-2258.0	NR_105946	102466913.0		NR_105946	ENSMUSG00000098297	Mir6980	Gm27969|mmu-mir-6980	microRNA 6980	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-38406918-4	chr16	38406791	38406991	+	784.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134102, intron 7 of 10)	intron (NM_134102, intron 7 of 10)	26254.0	NM_134102	85031.0	Mm.279805	NM_134102	ENSMUSG00000002847	Pla1a	AA986889|Ps-pla1|Pspla1	phospholipase A1 member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-138622840-4	chr5	138622741	138622941	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183025)	promoter-TSS (NM_183025)	-18.0	NM_183025	243308.0	Mm.36612	NM_183025	ENSMUSG00000056014	A430033K04Rik	C86988	RIKEN cDNA A430033K04 gene	protein-coding	4.94200672503622	5.06416719062082	5.58096473128553	5.37392389274201	5.09525569072014	4.96591461025579	5.24178147520276	4.80607190853018	-0.263953402155199	0.3936803775148	0.882309644749821
Merged-chr5-136933431-3	chr5	136933318	136933518	+	742.888855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015555, intron 3 of 3)	(ACGTG)n|Simple_repeat|Simple_repeat	14272.0	NR_015555	66752.0	Mm.135764	NR_015555	ENSMUSG00000097908	4933404O12Rik	AW494809	RIKEN cDNA 4933404O12 gene	ncRNA	-0.947981310248532	-1.06986221617136	-1.08111523493323	-1.08767915324048	-0.521931119253548	-1.06742364006257	-1.07856779814469	-1.08733643431101	1.79154211409157	0.579573222034837	1
Merged-chr4-106848122-2	chr4	106847978	106848178	+	855.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43071.0	NM_001347159	329910.0	Mm.222956	NM_025590	ENSMUSG00000034853	Acot11	1110020M10Rik|2010309H15Rik|AW060409|BFIT|BFIT1|Thea|Them1|mKIAA0707	acyl-CoA thioesterase 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-79869986-4	chr11	79869880	79870080	+	950.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	92407.0	NM_144826	216987.0	Mm.274961	NM_144826	ENSMUSG00000035575	Utp6	4732497O03Rik|HCA66	UTP6 small subunit processome component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64960097-4	chr5	64959997	64960197	+	989.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359180)	promoter-TSS (NM_001359180)	-1.0	NM_011604	21899.0	Mm.42146	NM_011604	ENSMUSG00000051498	Tlr6	-	toll-like receptor 6	protein-coding	1.89899813992124	2.2558788257705	2.27956068899615	2.21281313821536	2.42426550021367	1.47904390495625	1.19421883488851	1.40096588995111	-1.10509238455216	0.292025767818164	0.796251804652596
Merged-chr16-19985522-4	chr16	19985419	19985619	+	936.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-2470.0	NM_183390	239743.0	Mm.86699	NM_183390	ENSMUSG00000043008	Klhl6	-	kelch-like 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102441200-2	chr12	102441100	102441300	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1387.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-85292561-2	chr13	85292461	85292661	+	716.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A1|LTR|ERVL-MaLR	-3075.0	NM_145452	218397.0	Mm.259653	NM_145452	ENSMUSG00000021549	Rasa1	Gap|RasGAP|Rasa	RAS p21 protein activator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-59929835-2	chr9	59929735	59929935	+	824.375	f1_balb.idr|f1_c57bl6.idr	TTS (NM_173018)	TTS (NM_173018)	20244.0	NM_013708	23958.0	Mm.103641	NM_013708	ENSMUSG00000032292	Nr2e3	A930035N01Rik|PNR|RNR|rd7	nuclear receptor subfamily 2, group E, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83541156-4	chr11	83541050	83541250	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10632.0	NM_013653	20304.0	Mm.284248	NM_013653	ENSMUSG00000035042	Ccl5	MuRantes|RANTES|SISd|Scya5|TCP228	chemokine (C-C motif) ligand 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-51365484-4	chr3	51365389	51365589	+	999.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15-int|LTR|ERVL	-24845.0	NM_023502	69257.0	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-100681127-1	chr15	100681027	100681227	+	948.0	f1_c57bl6.idr	intron (NM_033612, intron 6 of 7)	intron (NM_033612, intron 6 of 7)	6793.0	NM_033612	109901.0	Mm.2131	NM_033612	ENSMUSG00000023031	Cela1	1810009A17Rik|1810062B19Rik|Ela-1|Ela1|PC-TsF	chymotrypsin-like elastase family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-98015923-2	chr6	98015823	98016023	+	632.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001178049, intron 9 of 9)	intron (NM_001178049, intron 9 of 9)	24140.0	NM_008601	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-45005496-3	chr16	45005383	45005583	+	941.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61805.0	NM_001128132	74603.0	Mm.297337	NM_027578	ENSMUSG00000036172	Cd200r3	4733401I18Rik|4833409J19Rik|AI505817|BB106877|mCD200RLb	CD200 receptor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-88116313-5	chr17	88116178	88116378	+	918.726685	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9234.0	NM_001190356	225058.0	Mm.312053	NM_001190356		Gm4832	EG225058	predicted gene 4832	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-51916235-4	chr11	51916152	51916352	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51379.0	NM_029976	52626.0	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-47837390-4	chr19	47837294	47837494	+	747.020813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027559)	promoter-TSS (NM_027559)	-33.0	NM_027559	100048534.0	Mm.29457	NM_027559	ENSMUSG00000044948	Cfap43	4632415N18Rik|4930428C11Rik|4930463G05Rik|AI429486|D19Ertd652e|Wdr96	cilia and flagella associated protein 43	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116866424-3	chr11	116866340	116866540	+	976.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178620, intron 9 of 12)	intron (NM_178620, intron 9 of 12)	12440.0	NM_001361586	69900.0	Mm.348004	NM_178620	ENSMUSG00000020818	Mfsd11	2600014M03Rik	major facilitator superfamily domain containing 11	protein-coding	2.45595946585399	3.7228895162156	2.52684567784049	3.56893931107836	3.36087287703629	2.46374083720217	2.95056126001375	3.52432664110139	-0.0851204017748977	0.899962615743522	0.998431161219273
Merged-chr18-32348492-4	chr18	32348373	32348573	+	997.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR40b|LTR|ERVL	-28744.0	NM_001083334	30948.0	Mm.4383	NM_009668	ENSMUSG00000024381	Bin1	ALP-1|Amphl|BRAMP-2|SH3P9	bridging integrator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25315492-5	chr7	25315434	25315634	+	917.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_183311, exon 15 of 15)	exon (NM_183311, exon 15 of 15)	-1630.0	NM_001160400	269878.0	Mm.38527	NM_001160400	ENSMUSG00000045039	Megf8	AW049492|Egfl4|b2b1702.2Clo|b2b1702Clo|b2b288Clo|m687Ddg|mKIAA0817	multiple EGF-like-domains 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171649066-4	chr1	171648959	171649159	+	934.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347184)	promoter-TSS (NM_001347184)	-60.0	NM_001347184	75345.0	Mm.164642	NM_144539	ENSMUSG00000038179	Slamf7	19A|19A24|4930560D03Rik|CRACC|CS1	SLAM family member 7	protein-coding	1.15015090499151	1.28141796267477	1.44553964614629	1.56867116493218	1.15889333887826	2.72033281864039	2.13954245481902	1.57747878058143	1.95541611744676	0.0787361225355997	0.427121466775621
Merged-chr9-31086538-2	chr9	31086438	31086638	+	833.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45261.0	NM_011176	19143.0	Mm.243926	NM_011176	ENSMUSG00000031995	St14	Epithin|MT-SP1|Prss14|Tmprss14|mCAP3|matriptase	suppression of tumorigenicity 14 (colon carcinoma)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140112069-3	chr5	140111980	140112180	+	638.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359025, intron 14 of 17)	L1MD|LINE|L1	62838.0	NM_001359027	17120.0	Mm.27250	NM_010752	ENSMUSG00000029554	Mad1l1	AI173502|AW550425|Mad1	MAD1 mitotic arrest deficient 1-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-50875877-4	chr14	50875764	50875964	+	951.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5310.0	NM_009351	21745.0	Mm.318736	NM_009351	ENSMUSG00000006281	Tep1	Tp1	telomerase associated protein 1	protein-coding	4.59967073309868	5.54386953670065	5.36533282591881	4.41079108345953	3.70753691691454	4.49700757843886	3.39277644960313	2.72099835024612	-1.70372092466499	0.000359716681144818	0.00849582822908569
Merged-chr1-86402468-4	chr1	86402385	86402585	+	819.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13124.0	NM_001319227	14767.0	Mm.389159	NM_010341	ENSMUSG00000026237	Nmur1	FM-3|Gpr66|NMU-R1|NMU1R|NmU-R	neuromedin U receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-70546075-4	chr4	70545985	70546185	+	980.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15-int|LTR|ERVL	-11157.0	NM_172694	230316.0	Mm.251188	NM_172694	ENSMUSG00000039270	Megf9	4933405H16Rik|9630025C07|Egfl5|mKIAA0818	multiple EGF-like-domains 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-121741682-4	chr11	121741591	121741791	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39264.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100783348-2	chr11	100783248	100783448	+	763.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113563, intron 18 of 18)	intron (NM_001113563, intron 18 of 18)	-12391.0	NM_031871	80860.0	Mm.37308	NM_031871	ENSMUSG00000017747	Ghdc	D11Lgp1e	GH3 domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-91458399-4	chr1	91458314	91458514	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011066, intron 1 of 22)	intron (NM_011066, intron 1 of 22)	914.0	NM_011066	18627.0	Mm.482463	NM_011066	ENSMUSG00000055866	Per2	mKIAA0347|mPer2	period circadian clock 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-67305010-4	chr17	67304909	67305109	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	49450.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	7.07864575940183	6.92136022263587	7.45780689422749	7.17673178340042	6.75754005611122	5.7529111563734	7.12767503440958	7.14134916208664	-0.39483995890485	0.101262567204199	0.494878107323561
Merged-chr1-184561498-3	chr1	184561391	184561591	+	779.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3800.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-25575182-2	chr8	25575082	25575282	+	585.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010206, exon 18 of 18)	3' UTR (NM_010206, exon 18 of 18)	-19099.0	NR_110510	102633315.0	Mm.437828	NR_110510	ENSMUSG00000086134	Gm16159	-	predicted gene 16159	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-13209422-2	chr14	13209322	13209522	+	629.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_121588, intron 2 of 3)	intron (NR_121588, intron 2 of 3)	75216.0	NR_121589	328354.0	Mm.252404	NM_177813	ENSMUSG00000051729	Gm5087	C630025C03|EG328354	predicted gene 5087	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-92736285-2	chr1	92736185	92736385	+	823.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-87444.0	NM_153114	260301.0	Mm.219545	NM_153114	ENSMUSG00000044055	Otos	OTOSP	otospiralin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-128847244-2	chr6	128847144	128847344	+	770.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001254946)	TTS (NM_001254946)	-20929.0	NM_030599	80782.0	Mm.6180	NM_030599	ENSMUSG00000079298	Klrb1b	Klrb1d|Ly55b|Ly55d|NKR-P1B|NKR-P1D|Nkrp1-b|Nkrp1b|Nkrp1d|ly-55b|ly-55d	killer cell lectin-like receptor subfamily B member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-94142834-2	chr13	94142734	94142934	+	571.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172589, intron 2 of 3)	intron (NM_172589, intron 2 of 3)	85038.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-3000429-4	chr9	3000311	3000511	+	931.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GSAT_MM|Satellite|Satellite	38332.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-4505527-4	chr12	4505425	4505625	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18588.0	NR_136891	102634330.0	Mm.402324	NR_136891	ENSMUSG00000112422	Gm31938	-	predicted gene, 31938	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65592041-2	chr9	65591941	65592141	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_151702, intron 7 of 11)	intron (NR_151702, intron 7 of 11)	4881.0	NM_001357527	208084.0	Mm.211032	NM_172453	ENSMUSG00000041064	Pif1	4631410M14|AI449441	PIF1 5'-to-3' DNA helicase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-20029424-2	chr3	20029324	20029524	+	763.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_080634, intron 2 of 16)	MTD|LTR|ERVL-MaLR	5886.0	NM_001146324	12807.0	Mm.291533	NM_080634	ENSMUSG00000027615	Hps3	coa	HPS3, biogenesis of lysosomal organelles complex 2 subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-47121252-4	chr19	47121142	47121342	+	811.799988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011053, intron 25 of 35)	intron (NM_011053, intron 25 of 35)	17052.0	NM_133746	72691.0	Mm.31663	NM_133746	ENSMUSG00000033033	Calhm2	2810048G17Rik|Fam26b	calcium homeostasis modulator 2	protein-coding	0.685068957212053	0.432602037043854	0.424717310338786	1.23832941711853	0.56201612762437	0.804543328803074	0.902750530286963	0.592062657867983	-0.174205407621683	0.91479302587519	1
Merged-chr9-78108595-4	chr9	78108492	78108692	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023605)	promoter-TSS (NM_023605)	64.0	NM_023605	71538.0	Mm.28584	NM_023605	ENSMUSG00000001366	Fbxo9	9030401P18Rik|AA986398	f-box protein 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100557742-2	chr11	100557642	100557842	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028918, intron 7 of 11)	intron (NM_028918, intron 7 of 11)	12110.0	NM_028918	74407.0	Mm.31590	NM_028918	ENSMUSG00000006784	Ttc25	4933404O19Rik	tetratricopeptide repeat domain 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-10868235-2	chr16	10868135	10868335	+	838.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33176.0	NM_001162932	223970.0	Mm.325777	NM_001033278	ENSMUSG00000037991	Rmi2	A630055G03Rik|Gm537|Gm929	RecQ mediated genome instability 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-25332623-4	chr2	25332528	25332728	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027448)	promoter-TSS (NR_027448)	-57.0	NR_027448	100272219.0	Mm.382103	NR_027448	ENSMUSG00000097345	AA543186	-	expressed sequence AA543186	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-40835824-4	chr11	40835745	40835945	+	980.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-80559.0	NM_009831	12450.0	Mm.2103	NM_009831	ENSMUSG00000020326	Ccng1	AI314029	cyclin G1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-74930966-4	chr15	74930873	74931073	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MurERV4-int|LTR|ERVK	-24078.0	NM_001164039	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	2.14178359183226	1.91769669871402	1.72772055791978	1.68472640429248	1.93151766752772	1.45617585513557	1.59187775820971	1.81632995585708	-0.537644036653506	0.594178285066779	0.9706660979479
Merged-chr5-134185200-2	chr5	134185100	134185300	+	741.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359852, intron 1 of 14)	B1_Mur1|SINE|Alu	1162.0	NM_053266	114674.0	Mm.218744	NM_053266	ENSMUSG00000015942	Gtf2ird2	1700012P16Rik	GTF2I repeat domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-47213200-2	chr13	47213100	47213300	+	668.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146042, intron 2 of 7)	intron (NM_146042, intron 2 of 7)	19197.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-50054644-4	chr18	50054577	50054777	+	929.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134131, intron 1 of 1)	intron (NM_134131, intron 1 of 1)	-1015.0	NR_155293	102635912.0	Mm.440627	NR_155293		C030005K06Rik	-	RIKEN cDNA C030005K06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-46714669-3	chr7	46714619	46714819	+	751.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011315, intron 2 of 3)	intron (NM_011315, intron 2 of 3)	957.0	NM_011315	20210.0	Mm.14277	NM_011315	ENSMUSG00000040026	Saa3	AV098916|Saa-3|l7R3	serum amyloid A 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-123025317-4	chr7	123025204	123025404	+	985.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54740.0	NM_175023	19647.0	Mm.4480	NM_011247	ENSMUSG00000030779	Rbbp6	4933422O15Rik|AI316869|BB233631|C030034J04Rik|C77662|P2P-R|PACT	retinoblastoma binding protein 6, ubiquitin ligase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-74772608-2	chr14	74772508	74772708	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033439, intron 19 of 19)	intron (NM_001033439, intron 19 of 19)	40311.0	NM_016903	13885.0	Mm.38055	NM_016903	ENSMUSG00000021996	Esd	Es-10|Es10|FGH|sid478	esterase D/formylglutathione hydrolase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125353801-2	chr6	125353701	125353901	+	992.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011609, intron 1 of 9)	intron (NM_011609, intron 1 of 9)	4078.0	NM_011609	21937.0	Mm.1258	NM_011609	ENSMUSG00000030341	Tnfrsf1a	CD120a|FPF|TNF-R|TNF-R-I|TNF-R1|TNF-R55|TNF-alphaR1|TNFAR|TNFR60|TNFRI|TNFRp55|TNFalpha-R1|Tnfr-2|Tnfr1|p55|p55-R	tumor necrosis factor receptor superfamily, member 1a	protein-coding	-0.745106959424032	-0.72842185191066	-0.733700964674681	-0.737894719142746	-0.744013376399723	-0.727255141447362	0.319502542514434	-0.737154194283011	4.2772427182614	0.0892744532119362	1
Merged-chr1-195037629-1	chr1	195037529	195037729	+	840.5	f0_balb.idr	promoter-TSS (NR_029745)	promoter-TSS (NR_029745)	82.0	NR_029745	387224.0		NR_029745	ENSMUSG00000065548	Mir29c	Mirn29c|mir-29c|mmu-mir-29c	microRNA 29c	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-103679515-2	chr5	103679415	103679615	+	840.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23783.0	NM_001163550	74218.0	Mm.159141	NM_028824	ENSMUSG00000029320	1700016H13Rik	-	RIKEN cDNA 1700016H13 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-14994544-2	chr8	14994444	14994644	+	706.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037736, intron 26 of 27)	intron (NM_001037736, intron 26 of 27)	-16481.0	NM_029116	74901.0	Mm.46675	NM_029116	ENSMUSG00000055675	Kbtbd11	2900016B01Rik|4930465M17Rik|mKIAA0711	kelch repeat and BTB (POZ) domain containing 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-46001018-2	chr4	46000918	46001118	+	685.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355189, intron 6 of 16)	intron (NM_001355189, intron 6 of 16)	28187.0	NM_001355189	100121.0	Mm.275413	NM_146142	ENSMUSG00000035517	Tdrd7	5730495N10Rik|AI447470|PCTAIRE2BP	tudor domain containing 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-34550659-4	chr19	34550555	34550755	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355262)	promoter-TSS (NM_001355262)	-39.0	NM_008332	15958.0	Mm.2036	NM_008332	ENSMUSG00000045932	Ifit2	AV302338|Ifi54|P54	interferon-induced protein with tetratricopeptide repeats 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-120570089-4	chr4	120570014	120570214	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355491)	promoter-TSS (NM_001355491)	162.0	NM_016748	51797.0	Mm.1815	NM_016748	ENSMUSG00000028633	Ctps	Ctps1	cytidine 5'-triphosphate synthase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117828551-2	chr10	117828451	117828651	+	600.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_024457, intron 1 of 7)	intron (NM_024457, intron 1 of 7)	17423.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-102884064-4	chr14	102883989	102884189	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	98543.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-4472245-2	chr7	4472145	4472345	+	714.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026146, intron 10 of 19)	intron (NM_026146, intron 10 of 19)	-1361.0	NR_028416	320749.0	Mm.396688	NR_028416		D630041G03Rik	-	RIKEN cDNA D630041G03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-31289277-3	chr17	31289156	31289356	+	683.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6227.0	NM_153062	224674.0	Mm.311395	NM_153062	ENSMUSG00000024036	Slc37a1	G3PP	solute carrier family 37 (glycerol-3-phosphate transporter), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16809918-2	chr7	16809818	16810018	+	708.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_173430, exon 3 of 3)	3' UTR (NM_173430, exon 3 of 3)	-5971.0	NM_133789	97387.0	Mm.21612	NM_133789	ENSMUSG00000030374	Strn4	C80611|ZIN|zinedin	striatin, calmodulin binding protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-92965299-4	chr7	92965199	92965399	+	858.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	90046.0	NM_028243	72461.0	Mm.389969	NM_028243	ENSMUSG00000061119	Prcp	2510048K03Rik|2610104A14Rik|AI451719|HUMPCP|PCP	prolylcarboxypeptidase (angiotensinase C)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-69176666-2	chr17	69176566	69176766	+	791.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355736, intron 1 of 21)	intron (NM_001355736, intron 1 of 21)	17310.0	NM_001355735	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-172562309-1	chr1	172562209	172562409	+	1000.0	f1_balb.idr	intron (NM_177723, intron 6 of 6)	intron (NM_177723, intron 6 of 6)	2403.0	NR_027644	240916.0	Mm.71940	NM_177723	ENSMUSG00000049598	Vsig8	A030011M19|EG240916	V-set and immunoglobulin domain containing 8	protein-coding	0.979724647501459	1.11108858344062	1.65668766495956	0.675109759313789	0.988290023928606	0.931838242238716	1.673138659839	0.676901009255318	-0.116453153515418	0.935442236810736	0.998431161219273
Merged-chr11-54878620-2	chr11	54878520	54878720	+	628.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2B1|LTR|ERVL	12237.0	NM_008248	15254.0	Mm.425	NM_008248	ENSMUSG00000020267	Hint1	AA673479|Hint|Ipk1|PKCI-1|PRKCNH1	histidine triad nucleotide binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-156673744-4	chr1	156673634	156673834	+	961.966675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023141, intron 1 of 5)	intron (NM_023141, intron 1 of 5)	605.0	NM_023141	30935.0	Mm.206737	NM_023141	ENSMUSG00000060519	Tor3a	Adir	torsin family 3, member A	protein-coding	1.98528882886746	1.20308609605418	0.726499380571311	1.73335034587968	0.692426592493719	0.747874926063637	0.73040409266773	1.83378555406711	-1.25418128835028	0.410520070841858	0.894256659801134
Merged-chr3-87616947-2	chr3	87616847	87617047	+	734.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001003912)	promoter-TSS (NM_001003912)	-612.0	NM_001360197	213498.0	Mm.287267	NM_001003912	ENSMUSG00000041977	Arhgef11	PDZ-RhoGEF|Prg|RhoGEF|mKIAA0380	Rho guanine nucleotide exchange factor (GEF) 11	protein-coding	-0.309992552566655	-0.295113221164436	0.395384371969357	-0.303734758346072	0.368492915332258	-0.294018888957573	-0.298901858096156	-0.303077446272115	-0.0696520590335367	0.978684068238393	1
Merged-chr17-34638106-4	chr17	34638012	34638212	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6771.0	NM_019873	56299.0	Mm.10025	NM_019873	ENSMUSG00000033739	Fkbpl	DIR1|NG7|Ppiase-X|Wisp39	FK506 binding protein-like	protein-coding	1.02318122054112	1.29511878418106	0.749928581614124	1.52201344069932	0.728150623643295	1.1555092526634	1.38100617363015	1.21494638919799	-0.180119441508584	0.898102774873489	0.998431161219273
Merged-chr2-26566339-2	chr2	26566239	26566439	+	995.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14717.0	NM_178444	353156.0	Mm.268933	NM_178444	ENSMUSG00000026921	Egfl7	VE-statin|Zneu1	EGF-like domain 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-25007394-2	chr13	25007294	25007494	+	792.416687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013389, intron 2 of 10)	intron (NM_001013389, intron 2 of 10)	12923.0	NM_001013389	380836.0	Mm.387097	NM_001013389	ENSMUSG00000021339	Mrs2	Gm902|HPT|Mrs2l|RPT	MRS2 magnesium transporter	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-51972966-4	chr2	51972870	51973070	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001141948, exon 1 of 8)	5' UTR (NM_001141948, exon 1 of 8)	238.0	NM_001141949	64685.0	Mm.7491	NM_019401	ENSMUSG00000026946	Nmi	-	N-myc (and STAT) interactor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-69502966-2	chr12	69502866	69503066	+	982.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27416.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-74698852-2	chr1	74698752	74698952	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001014974)	TTS (NM_001014974)	-14683.0	NM_024264	104086.0	Mm.85083	NM_024264	ENSMUSG00000026170	Cyp27a1	1300013A03Rik|Cyp27	cytochrome P450, family 27, subfamily a, polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-105972513-2	chr1	105972413	105972613	+	883.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17769.0	NR_151625	635504.0	Mm.359717	NR_151625		Gm7160	EG635504	predicted gene 7160	ncRNA	-0.546671029960075	-0.534527926080117	-0.538503314055676	-0.54157237361137	-0.54591227166826	-0.533632206426909	0.159501731745641	-0.0989247387008587	3.51954248373033	0.195448891068207	1
Merged-chr9-71167839-2	chr9	71167739	71167939	+	851.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_110517)	promoter-TSS (NR_110517)	-937.0	NR_110517	102635087.0	Mm.444536	NR_110517	ENSMUSG00000111429	Gm32511	-	predicted gene, 32511	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-87523678-3	chr11	87523577	87523777	+	747.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199293, intron 18 of 30)	intron (NM_001199293, intron 18 of 30)	-54712.0	NM_001361936	18952.0	Mm.2214	NM_011129	ENSMUSG00000020486	Sept4	ARTS|Bh5|Pnutl2	septin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10969499-2	chr19	10969399	10969599	+	788.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023529, intron 1 of 8)	MIRb|SINE|MIR	5171.0	NM_023529	69826.0	Mm.273404	NM_023529	ENSMUSG00000024731	Ms4a10	2010001N17Rik	membrane-spanning 4-domains, subfamily A, member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-43745316-1	chr5	43745216	43745416	+	958.0	f0_balb.idr	exon (NM_001159963, exon 11 of 11)	exon (NM_001159963, exon 11 of 11)	36833.0	NM_001159963	242960.0	Mm.25794	NM_178729	ENSMUSG00000039753	Fbxl5	Fbl4|Fir4	F-box and leucine-rich repeat protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118296270-1	chr11	118296170	118296370	+	561.0	f1_c57bl6.idr	Intergenic	Intergenic	-6026.0	NM_001033528	72344.0	Mm.232293	NM_001033528	ENSMUSG00000033909	Usp36	2700002L06Rik|mKIAA1453	ubiquitin specific peptidase 36	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-33292929-3	chr4	33292815	33293015	+	855.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17396.0	NM_011884	24018.0	Mm.240024	NM_011884	ENSMUSG00000028274	Rngtt	AU020997|HCE|MCE1	RNA guanylyltransferase and 5'-phosphatase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-20820380-4	chr1	20820285	20820485	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008563)	promoter-TSS (NM_008563)	-73.0	NM_008563	17215.0	Mm.4502	NM_008563	ENSMUSG00000041859	Mcm3	AL033361|C80350|Mcmd|P1|P1-MCM3|p1.m	minichromosome maintenance complex component 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-121623208-1	chr10	121623108	121623308	+	621.0	f1_balb.idr	intron (NM_001359618, intron 1 of 24)	intron (NM_001359618, intron 1 of 24)	3124.0	NM_001081056	73192.0	Mm.25042	NM_001081056	ENSMUSG00000034667	Xpot	1110004L07Rik|3110065H13Rik|AI452076|C79645|EXPORTIN-T	exportin, tRNA (nuclear export receptor for tRNAs)	protein-coding	0.0170775241675436	0.217082404061822	0.0272907036464824	0.430507927205391	0.0180228881814788	0.0334204905085511	0.58242103947561	0.436205956891175	0.845518198568871	0.690145080918065	1
Merged-chr1-162563433-4	chr1	162563345	162563545	+	987.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7070.0	NM_001356527	53330.0	Mm.10699	NM_016796	ENSMUSG00000026696	Vamp4	D1Ertd147e|Vamp-4	vesicle-associated membrane protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-31697856-4	chr5	31697764	31697964	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181282)	promoter-TSS (NM_181282)	-186.0	NM_181281	107976.0	Mm.482126	NM_144541	ENSMUSG00000052139	Babam2	6030405P19Rik|AI429776|B830038C02Rik|Bre	BRISC and BRCA1 A complex member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-12927076-2	chr13	12926976	12927176	+	708.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPEY4_I-int|LTR|ERVK	78254.0	NM_031191	18811.0	Mm.88796	NM_031191	ENSMUSG00000079092	Prl2c2	Ghd2|MRP-1|PLF-1|Plf|Plf1	prolactin family 2, subfamily c, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-24946665-3	chr16	24946524	24946724	+	878.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 10 of 12)	intron (NM_178665, intron 10 of 12)	-113015.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-151994398-3	chr2	151994297	151994497	+	790.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-2114.0	NM_027172	69698.0	Mm.258262	NM_027172	ENSMUSG00000027463	Slc52a3	2310046K01Rik|RFT2	solute carrier protein family 52, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101412890-4	chr7	101412747	101412947	+	987.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_027180)	TTS (NM_027180)	-8844.0	NM_001008548	207728.0	Mm.247564	NM_001008548	ENSMUSG00000030653	Pde2a	CGS-PDE|cGSPDE	phosphodiesterase 2A, cGMP-stimulated	protein-coding	0.226807144070652	0.600992957856754	0.240046291393742	0.86479892437571	0.228037102851274	0.748562870017158	0.241467909360075	0.66742704706647	-0.128961899170921	0.947447273838601	1
Merged-chr4-111721650-4	chr4	111721565	111721765	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026470, intron 1 of 12)	intron (NM_026470, intron 1 of 12)	1655.0	NM_026470	67946.0	Mm.275526	NM_026470	ENSMUSG00000034401	Spata6	1700062C23Rik|AI790763|Hash|KRP|Mash	spermatogenesis associated 6	protein-coding	3.91164599458138	3.4904058361286	3.90349216648073	4.50016489773152	4.47872413824044	4.44986026112035	4.25716565492322	4.07598746594582	0.424180103748835	0.329786077472615	0.831942889324137
Merged-chr2-35271960-4	chr2	35271879	35272079	+	879.5791630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001206367, intron 2 of 17)	intron (NM_001206367, intron 2 of 17)	5235.0	NM_001206369	227753.0	Mm.443	NM_146120	ENSMUSG00000026879	Gsn	ADF	gelsolin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-163734968-2	chr2	163734868	163735068	+	680.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001272052, intron 3 of 11)	intron (NM_001272052, intron 3 of 11)	15271.0	NM_007398	11486.0	Mm.388	NM_007398	ENSMUSG00000017697	Ada	-	adenosine deaminase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-53272800-2	chr18	53272700	53272900	+	600.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029394, intron 1 of 6)	intron (NM_029394, intron 1 of 6)	27138.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90535271-3	chr2	90535166	90535366	+	783.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	ID4|SINE|ID	45381.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-5393225-4	chr2	5393169	5393369	+	772.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030601, intron 1 of 1)	intron (NR_030601, intron 1 of 1)	13879.0	NR_030601	100124465.0		NR_030601	ENSMUSG00000078031	Mir466d	Mirn466d	microRNA 466d	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-44952511-3	chr13	44952415	44952615	+	791.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025772, intron 7 of 9)	ORR1D2|LTR|ERVL-MaLR	49581.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-62976747-2	chr18	62976647	62976847	+	729.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1169.0	NM_028017	108123.0	Mm.292687	NM_028017	ENSMUSG00000024581	Napg	2400003O04Rik|SNARE	N-ethylmaleimide sensitive fusion protein attachment protein gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-111045567-2	chr9	111045467	111045667	+	646.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11677.0	NM_001302377	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-167338748-2	chr1	167338648	167338848	+	645.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-11243.0	NM_019993	56752.0	Mm.292539	NM_019993	ENSMUSG00000026687	Aldh9a1	AA139417|Abaldh|ESTM40|TMABA-DH|Tmabadh	aldehyde dehydrogenase 9, subfamily A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43669287-4	chr4	43669187	43669387	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175517)	promoter-TSS (NM_175517)	316.0	NM_001355718	242409.0	Mm.171489	NM_001085508	ENSMUSG00000078716	Tmem8b	4930500O05Rik	transmembrane protein 8B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-92318353-4	chr5	92318261	92318461	+	996.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-8337.0	NM_172713	231452.0	Mm.86564	NM_172713	ENSMUSG00000029415	Sdad1	4931421J16|AA591032|AW538460	SDA1 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41989960-4	chr19	41989877	41990077	+	968.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145500, intron 1 of 2)	ID_B1|SINE|B4	8214.0	NM_145500	226122.0	Mm.22948	NM_145500	ENSMUSG00000025171	Ubtd1	BC016129	ubiquitin domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-90956925-2	chr1	90956825	90957025	+	826.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3817.0	NM_001101647	623503.0	Mm.471593	NM_001101647	ENSMUSG00000090550	Prlh	EG623503	prolactin releasing hormone	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-66051815-4	chr5	66051733	66051933	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139065, intron 2 of 6)	MIR|SINE|MIR	46346.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-155356791-2	chr2	155356695	155356895	+	753.833313	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_030475)	promoter-TSS (NR_030475)	-22.0	NR_030475	735287.0		NR_030475	ENSMUSG00000076216	Mir695	Mirn695|mmu-mir-695	microRNA 695	ncRNA	1.30113555864661	1.79616332577383	2.21091872580063	2.31640358433542	1.74551448926138	1.95765525558056	1.15957280585209	1.95282322399859	-0.636219417340447	0.552015337556668	0.95940318976411
Merged-chr11-69678512-2	chr11	69678412	69678612	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030702, intron 4 of 10)	intron (NM_030702, intron 4 of 10)	3458.0	NM_030702	80886.0	Mm.284592	NM_030702	ENSMUSG00000005204	Senp3	AA408656|Smt3ip|Smt3ip1	SUMO/sentrin specific peptidase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-151428532-4	chr1	151428415	151428615	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025819)	promoter-TSS (NM_025819)	-27.0	NM_026876	98685.0	Mm.289373	NM_026876	ENSMUSG00000053286	Trmt1l	1190005F20Rik|AW226554|C1orf25|Trm1-like|Trm1l	tRNA methyltransferase 1 like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-145026769-3	chr4	145026677	145026877	+	941.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276465, intron 65 of 69)	intron (NM_001276465, intron 65 of 69)	133640.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-6554806-4	chr15	6554732	6554932	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25015.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-52954135-2	chr2	52954035	52954235	+	703.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	96267.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-80062845-3	chr2	80062730	80062930	+	812.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355141, intron 2 of 15)	L1_Mus3|LINE|L1	-23928.0	NM_001355142	18573.0	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding	2.23428335733009	1.96977804750448	2.43659475596646	1.6999288268075	1.28941484548553	2.54737183937147	1.3840917466525	1.10716099107442	-0.965345606395311	0.374766488207471	0.8677007912413
Merged-chr14-52105112-1	chr14	52105012	52105212	+	628.5	f1_balb.idr	Intergenic	B2_Mm2|SINE|B2	-1091.0	NM_001360180	15381.0	Mm.427321	NM_016884	ENSMUSG00000060373	Hnrnpc	AL022939|D14Wsu171e|Hnrpc|Hnrpc1|Hnrpc2|hnRNPC1|hnRNPC2|hnrnp-C	heterogeneous nuclear ribonucleoprotein C	protein-coding	1.61199283733061	2.30503825327131	2.40001148158822	1.35643610734573	1.47925647243312	1.81734898019445	1.39670489822794	2.16998434580372	-0.666459742425798	0.521445752621936	0.947836760490745
Merged-chr3-41563720-4	chr3	41563617	41563817	+	941.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001130185)	promoter-TSS (NM_001130185)	-34.0	NM_001130185	269424.0	Mm.286285	NM_172303	ENSMUSG00000025764	Jade1	AU041499|D530048A03Rik|Phf17|mKIAA1807	jade family PHD finger 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-85143696-2	chr16	85143610	85143810	+	723.166626	f0_balb.idr|f1_balb.idr	intron (NM_001198825, intron 1 of 15)	intron (NM_001198825, intron 1 of 15)	29997.0	NM_001198825	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	2.66847799001534	2.31131869105164	2.22912821000083	2.46906169279711	2.69162670191992	3.02771146033705	2.69778700047299	4.04152509972147	1.4978254125364	0.0390765676411261	0.281738952397138
Merged-chr9-21539233-2	chr9	21539133	21539333	+	745.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001198794, intron 4 of 6)	intron (NM_001198794, intron 4 of 6)	-7661.0	NM_021531	59035.0	Mm.178115	NM_021531	ENSMUSG00000032185	Carm1	Prmt4	coactivator-associated arginine methyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-36476431-2	chr3	36476331	36476531	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_105976)	promoter-TSS (NR_105976)	494.0	NM_028183	72282.0	Mm.55317	NM_028183	ENSMUSG00000027713	1810062G17Rik	-	RIKEN cDNA 1810062G17 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-92396210-2	chr16	92396110	92396310	+	585.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019466, intron 2 of 3)	intron (NM_019466, intron 2 of 3)	3868.0	NM_019466	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-80932554-3	chr11	80932455	80932655	+	841.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034013, intron 3 of 9)	intron (NM_001034013, intron 3 of 9)	74166.0	NM_029367	75622.0	Mm.26988	NM_029367	ENSMUSG00000053184	Spaca3	1700025M08Rik|ALLP17|Lyc3|SLLP1|mSLLP1	sperm acrosome associated 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-116414662-1	chr3	116414562	116414762	+	596.0	f0_c57.idr	intron (NM_001173553, intron 2 of 13)	intron (NM_001173553, intron 2 of 13)	9370.0	NM_001080818	229776.0	Mm.17647	NM_001080818	ENSMUSG00000033502	Cdc14a	A830059A17Rik|CDC14A2|CDC14a1|Cdc14	CDC14 cell division cycle 14A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100848980-2	chr7	100848880	100849080	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358914, intron 6 of 10)	intron (NM_001358914, intron 6 of 10)	14433.0	NM_001358914	320100.0	Mm.40336	NM_177073	ENSMUSG00000008318	Relt	E430021K24Rik|Tnfrsf19l	RELT tumor necrosis factor receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-113781075-4	chr9	113780997	113781197	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114347, intron 6 of 39)	Lx9|LINE|L1	-12233.0	NM_001286603	76499.0	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-122132975-4	chr7	122132861	122133061	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289845)	promoter-TSS (NM_001289845)	-15.0	NM_001289845	233826.0	Mm.38348	NM_172744	ENSMUSG00000044702	Palb2	BC066140	partner and localizer of BRCA2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-112239412-4	chr2	112239288	112239488	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207206)	promoter-TSS (NM_207206)	-453.0	NM_207206	99010.0	Mm.33438	NM_207206	ENSMUSG00000027134	Lpcat4	AI505034|Agpat7|Aytl3|LPEAT2	lysophosphatidylcholine acyltransferase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-146796061-4	chr6	146795979	146796179	+	856.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-9451.0	NM_001289680	272322.0	Mm.333500	NM_172309	ENSMUSG00000040187	Arntl2	4632430A05Rik|BMAL2|CLIF|MOP9|bHLHe6	aryl hydrocarbon receptor nuclear translocator-like 2	protein-coding	3.62540301390542	4.86854797473894	3.99185375033653	4.00092959768312	3.10349672557631	3.87045074036693	2.34349947151847	3.96293081227432	-1.03245571590262	0.0665309610476633	0.386885656023691
Merged-chr19-7240483-3	chr19	7240378	7240578	+	806.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027643, intron 1 of 7)	intron (NM_027643, intron 1 of 7)	744.0	NM_027643	70999.0	Mm.329605	NM_027643	ENSMUSG00000024764	Naa40	4931433E08Rik|AU023197|Nat11|NatD	N(alpha)-acetyltransferase 40, NatD catalytic subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27624361-2	chr17	27624261	27624461	+	580.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019837)	promoter-TSS (NM_019837)	-909.0	NM_019837	56409.0	Mm.144699	NM_019837	ENSMUSG00000024213	Nudt3	1110011B09Rik|AA960325|Dipp|Dipp1	nudix (nucleotide diphosphate linked moiety X)-type motif 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55364889-2	chr19	55364789	55364989	+	665.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360431, intron 3 of 8)	intron (NM_001360431, intron 3 of 8)	48832.0	NM_001293686	53611.0	Mm.258637	NM_016862	ENSMUSG00000024983	Vti1a	1110014F16Rik|1110018K19Rik|4921537J05Rik|MVti1|MVti1a|Vti1|Vti1-rp2	vesicle transport through interaction with t-SNAREs 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-72398584-2	chr4	72398484	72398684	+	732.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER2|LTR|ERV1	197340.0	NR_027923	68285.0	Mm.37541	NR_027923		C630043F03Rik	AI851307	RIKEN cDNA C630043F03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-60744801-4	chr18	60744714	60744914	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001348146, intron 1 of 6)	intron (NM_001348146, intron 1 of 6)	1932.0	NM_001348101	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-21499333-3	chr16	21499216	21499416	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081366, intron 21 of 46)	intron (NM_001081366, intron 21 of 46)	76198.0	NM_001285894	209018.0	Mm.235683	NM_145948	ENSMUSG00000033653	Vps8	AI315068|AU040738|mKIAA0804	VPS8 CORVET complex subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-89295359-5	chr4	89295271	89295471	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009877)	promoter-TSS (NM_009877)	191.0	NR_132431	102633081.0	Mm.409388	NR_132431		Gm12610	ANRIL|Gm12609	predicted gene 12610	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-20879736-4	chr10	20879624	20879824	+	954.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72823.0	NM_026203	52906.0	Mm.253280	NM_026203	ENSMUSG00000019986	Ahi1	1700015F03Rik|Ahi-1|D10Bwg0629e	Abelson helper integration site 1	protein-coding	1.99892963778562	3.36903988774716	3.25527081930599	2.95863612638708	1.86097257780247	1.35494995496288	1.31002003001774	2.62826014896782	-2.18561889116291	0.0173485707018669	0.161605707516304
Merged-chr12-8923759-2	chr12	8923659	8923859	+	879.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008640, intron 1 of 6)	B3|SINE|B2	2452.0	NM_008640	17775.0	Mm.30071	NM_008640	ENSMUSG00000020585	Laptm4a	AA286466|LAPTM4|MTP|Mtrp|mKIAA0108	lysosomal-associated protein transmembrane 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-38081987-2	chr15	38081887	38082087	+	830.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C2-int|LTR|ERVL-MaLR	-3133.0	NM_001081359	70790.0	Mm.476840	NM_027553	ENSMUSG00000037487	Ubr5	Edd|Edd1	ubiquitin protein ligase E3 component n-recognin 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-73765438-4	chr13	73765336	73765536	+	938.6083369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360694, intron 1 of 24)	intron (NM_001360694, intron 1 of 24)	1739.0	NM_011390	20499.0	Mm.275800	NM_011390	ENSMUSG00000017756	Slc12a7	AA408796|D13Ertd261e|Kcc4	solute carrier family 12, member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-37478073-4	chr1	37477947	37478147	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173870, intron 5 of 15)	L1MC|LINE|L1	10558.0	NR_024017	77633.0	Mm.483177	NR_024017	ENSMUSG00000103948	4930594C11Rik	-	G1 to S phase transition pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-76616442-2	chr12	76616342	76616542	+	593.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013675, intron 15 of 35)	ORR1D2-int|LTR|ERVL-MaLR	-68517.0	NR_046044	100504549.0	Mm.440349	NR_046044	ENSMUSG00000112388	AI463170	-	expressed sequence AI463170	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-75680762-2	chr15	75680662	75680862	+	604.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1962.0	NM_028404	72960.0	Mm.182401	NM_028404	ENSMUSG00000000934	Top1mt	2900052H09Rik	DNA topoisomerase 1, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-53944667-4	chr19	53944568	53944768	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001195338)	promoter-TSS (NM_001195338)	-41.0	NM_001195338	100503572.0	Mm.375091	NM_001195338	ENSMUSG00000084957	Bbip1	2310002J21Rik|2610002B11Rik|4930560M04Rik|Ncrna00081	BBSome interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-7500947-1	chr3	7500847	7501047	+	696.0	f1_balb.idr	Intergenic	RMER1B|Other|Other	-2479.0	NM_173181	67306.0	Mm.332366	NM_173181	ENSMUSG00000043542	Zc2hc1a	3110050N22Rik|AI790358|AU023959|Fam164a	zinc finger, C2HC-type containing 1A	protein-coding	-1.50874880059862	-1.47511716453926	-1.4852876488768	-1.49364198752927	-1.50638792193216	-0.992828729615453	-1.48298527415345	-1.4921465649048	2.3185461113984	0.50391666537493	1
Merged-chr8-83725715-2	chr8	83725676	83725876	+	703.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_011925, intron 13 of 19)	intron (NM_011925, intron 13 of 19)	-1792.0	NR_106188	102465897.0		NR_106188	ENSMUSG00000098465	Mir1668	Gm27590|mmu-mir-1668	microRNA 1668	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-39485488-2	chr18	39485388	39485588	+	606.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008173, intron 1 of 7)	intron (NM_008173, intron 1 of 7)	1757.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-64949961-4	chr14	64949876	64950076	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253731)	promoter-TSS (NM_001253731)	-69.0	NM_153414	210925.0	Mm.71332	NM_153414	ENSMUSG00000021975	Ints9	BC028953|D14Ertd231e	integrator complex subunit 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19404112-3	chr7	19403958	19404158	+	844.095215	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286039)	promoter-TSS (NM_001286039)	46.0	NM_001286039	232943.0	Mm.213403	NM_146182	ENSMUSG00000040714	Klc3	BC017147|Klct	kinesin light chain 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-91361722-3	chr13	91361634	91361834	+	565.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26351.0	NR_045161	320297.0	Mm.375866	NR_045161	ENSMUSG00000097182	A830009L08Rik	-	RIKEN cDNA A830009L08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-86585154-3	chr11	86585056	86585256	+	909.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029738)	promoter-TSS (NR_029738)	-998.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-105014426-2	chr3	105014326	105014526	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030249, intron 3 of 5)	intron (NM_030249, intron 3 of 5)	38527.0	NM_001163332	80281.0	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128379642-2	chr10	128379542	128379742	+	963.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172790, intron 5 of 27)	intron (NM_172790, intron 5 of 27)	2518.0	NM_172790	237615.0	Mm.440177	NM_172790	ENSMUSG00000014498	Ankrd52	6430544C07|G431002C21Rik	ankyrin repeat domain 52	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-58678661-2	chr1	58678561	58678761	+	747.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347056, intron 4 of 13)	intron (NM_001347056, intron 4 of 13)	13784.0	NM_001347056	108812.0	Mm.442063	NM_175370	ENSMUSG00000047528	Als2cr12	4933405P16Rik|4933425F06Rik	amyotrophic lateral sclerosis 2 chromosome region 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-121847287-10	chr3	121847177	121847377	+	740.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5b|LINE|L1	-31975.0	NM_008991	19299.0	Mm.399042	NM_008991	ENSMUSG00000028127	Abcd3	AI313901|AU018866|AW146054|PMP68|PMP70|Pxmp1	ATP-binding cassette, sub-family D (ALD), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-37573817-2	chr13	37573718	37573918	+	602.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	228473.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	0.686234364801086	0.280615984624375	0.0949700054150691	0.3750783809135	0.443368062762357	0.101100638891771	0.264643175862206	0.091796054733724	-1.12527740981922	0.567073232329543	1
Merged-chr3-18051703-4	chr3	18051577	18051777	+	888.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2648.0	NM_021560	59058.0	Mm.149938	NM_021560	ENSMUSG00000025128	Bhlhe22	Beta3|Beta3a|Bhlhb5	basic helix-loop-helix family, member e22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-11066251-4	chr16	11066154	11066354	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009223)	promoter-TSS (NM_009223)	-44.0	NM_009223	20621.0	Mm.325800	NM_009223	ENSMUSG00000037972	Snn	2810407J07Rik|AI848521|AW547286	stannin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81024041-4	chr15	81023953	81024153	+	952.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001082536, intron 4 of 13)	intron (NM_001082536, intron 4 of 13)	46288.0	NM_134091	105835.0	Mm.274943	NM_134091	ENSMUSG00000042303	Sgsm3	1810012I01Rik|AI428557|BB175482|Cip85|R75178|RUSC3|Rutbc3	small G protein signaling modulator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-5574205-2	chr5	5574105	5574305	+	968.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_033499, intron 1 of 1)	intron (NR_033499, intron 1 of 1)	406.0	NR_033499	667705.0	Mm.376656	NR_033499	ENSMUSG00000073234	Gm8773	EG667705|Gm29287	predicted gene 8773	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-44474324-4	chr19	44474219	44474419	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19153.0	NM_011720	22423.0	Mm.88365	NM_011720	ENSMUSG00000036961	Wnt8b	-	wingless-type MMTV integration site family, member 8B	protein-coding	3.09468815802502	1.98179912820375	2.64388857589964	3.5236274101889	3.1200161321142	3.56231135516255	3.12062092945118	2.82380713676124	0.405124913216789	0.553939157906481	0.959914380895535
Merged-chr10-67200429-4	chr10	67200309	67200509	+	932.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207221, intron 3 of 25)	intron (NM_207221, intron 3 of 25)	14659.0	NM_001242396	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-60738077-2	chr14	60737977	60738177	+	915.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310594, intron 1 of 9)	Lx9|LINE|L1	5173.0	NM_001310594	219140.0	Mm.149776	NM_001033272	ENSMUSG00000021990	Spata13	C79050|ESTM11|X83327|mFLJ00298	spermatogenesis associated 13	protein-coding	2.28647240468586	1.90395133082209	1.84562549720984	1.7991393563077	2.30502129303019	1.91683228303107	1.85866567484215	1.80736305957011	0.0387868997190684	0.966941458225562	0.998431161219273
Merged-chr2-159783424-3	chr2	159783320	159783520	+	952.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-163921.0	NR_040498	71081.0	Mm.383491	NR_040498	ENSMUSG00000085198	4933416E03Rik	-	RIKEN cDNA 4933416E03 gene	ncRNA	2.76671655569724	1.95860219221594	1.8880616243681	2.35417082083039	1.45661987008329	1.14132645798816	1.11417985142984	1.84148353993943	-2.47757286162668	0.023154547541958	0.198151399007427
Merged-chr2-127086952-2	chr2	127086852	127087052	+	884.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026678, intron 5 of 7)	intron (NM_026678, intron 5 of 7)	16295.0	NM_026678	109778.0	Mm.22028	NM_026678	ENSMUSG00000001999	Blvra	0610006A11Rik|2500001N03Rik|Blvr	biliverdin reductase A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-61227882-4	chr19	61227764	61227964	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009970, intron 1 of 11)	CpG-7695	554.0	NM_009970	12982.0	Mm.287228	NM_009970	ENSMUSG00000059326	Csf2ra	CD116|Csfgmra|GM-CSF-Ra|GM-CSFR	colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)	protein-coding	-1.50561175621786	-1.47331375025452	-1.02203377115094	-1.49110398925286	-1.50334449591826	-1.47119716082604	-1.48086985756939	-1.48966786617048	-2.07776723614574	0.550394407909386	1
Merged-chr18-61209697-2	chr18	61209553	61209753	+	922.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_007885, intron 1 of 3)	intron (NM_007885, intron 1 of 3)	1943.0	NM_007885	13521.0	Mm.24803	NM_007885	ENSMUSG00000034320	Slc26a2	Dtd|ST-OB	solute carrier family 26 (sulfate transporter), member 2	protein-coding	0.956244959444929	0.013398193181153	0.00566106475797296	-0.000375162957953035	0.972814852667944	0.0151292145545099	0.00737580194872606	0.000683669953711025	0.0420561319514604	0.985393473989274	1
Merged-chr5-142463914-4	chr5	142463825	142464025	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172725)	promoter-TSS (NM_172725)	-6.0	NM_172725	231855.0	Mm.78250	NM_172725	ENSMUSG00000039623	Ap5z1	C330006K01Rik	adaptor-related protein complex 5, zeta 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55299556-4	chr19	55299455	55299655	+	855.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360595, intron 9 of 9)	intron (NM_001360595, intron 9 of 9)	16481.0	NM_001360595	66980.0	Mm.386789	NM_025883	ENSMUSG00000024982	Zdhhc6	2400007G07Rik|5930409M18Rik|AI462345|C77369|DHHC-6	zinc finger, DHHC domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-21816346-2	chr19	21816246	21816446	+	621.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033759, intron 11 of 23)	intron (NM_001033759, intron 11 of 23)	38006.0	NM_031997	83921.0	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-32709017-2	chr16	32708917	32709117	+	577.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26869.0	NM_080457	140474.0	Mm.214599	NM_080457	ENSMUSG00000079620	Muc4	4933405I11Rik|Asgp	mucin 4	protein-coding	-1.52696403314699	-1.49523967873556	-1.5048333853602	-1.51271394162622	-1.52473704212565	-1.49316068248889	-1.50266158046844	-1.06847079017215	2.01069003169785	0.564432837776867	1
Merged-chr4-141601716-2	chr4	141601707	141601907	+	584.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_133754, intron 1 of 8)	intron (NM_133754, intron 1 of 8)	-1883.0	NM_001163256	74202.0	Mm.490327	NM_133754	ENSMUSG00000006219	Fblim1	2410043F08Rik|Cal|Fblp1|Gt10|migfilin|migfilin(s)	filamin binding LIM protein 1	protein-coding	1.34673962412362	0.972310578572268	1.48085908063794	0.739311898754201	1.15387289819794	1.55632638707802	0.750905720026312	1.08239680873448	-0.00902372048204084	0.994891419766224	0.998431161219273
Merged-chr4-130924238-1	chr4	130924138	130924338	+	547.0	f1_c57bl6.idr	intron (NM_010686, intron 1 of 7)	intron (NM_010686, intron 1 of 7)	10904.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-101463282-2	chr14	101463182	101463382	+	764.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081278, intron 11 of 18)	intron (NM_001081278, intron 11 of 18)	145909.0	NM_001081278	210789.0	Mm.320639	NM_173380	ENSMUSG00000033083	Tbc1d4	5930406J04Rik|A930035N22|AV295684|As160	TBC1 domain family, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-59821447-2	chr13	59821347	59821547	+	833.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153538, intron 2 of 27)	intron (NM_153538, intron 2 of 27)	1700.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-41741400-4	chr4	41741298	41741498	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286551)	promoter-TSS (NM_001286551)	-39.0	NM_001286551	18391.0	Mm.425181	NM_011014	ENSMUSG00000036078	Sigmar1	Oprs1|Sig1R|sigma1R	sigma non-opioid intracellular receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-11110384-4	chr4	11110314	11110514	+	853.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13544.0	NR_151526	100503518.0	Mm.102270	NR_151526	ENSMUSG00000086765	Gm11827	-	predicted gene 11827	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-100729207-4	chr12	100729105	100729305	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4085.0	NM_153587	73086.0	Mm.220417	NM_153587	ENSMUSG00000021180	Rps6ka5	3110005L17Rik|6330404E13Rik|AI854034|MSK1|MSPK1|RLPK|RLSK|S6K-alpha-5	ribosomal protein S6 kinase, polypeptide 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126692514-2	chr7	126692414	126692614	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_029420, exon 3 of 6)	exon (NM_029420, exon 3 of 6)	3269.0	NM_029420	75764.0	Mm.280573	NM_029420	ENSMUSG00000059772	Slx1b	1110030E23Rik|2410170E21Rik|4833422P03Rik|AI853643|Giyd1|Giyd2	SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-24529543-2	chr18	24529443	24529643	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360807, intron 1 of 7)	CpG	661.0	NM_144861	225283.0	Mm.28427	NM_144861	ENSMUSG00000040446	Rprd1a	C77387|mKIAA4077	regulation of nuclear pre-mRNA domain containing 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-144470559-3	chr3	144470446	144470646	+	772.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355234, intron 1 of 6)	intron (NM_001355234, intron 1 of 6)	99670.0	NM_011828	23908.0	Mm.12863	NM_011828	ENSMUSG00000040151	Hs2st1	2OST|AW214369|Hs2st|mKIAA0448	heparan sulfate 2-O-sulfotransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-120358847-1	chr6	120358747	120358947	+	596.0	f0_balb.idr	intron (NR_045558, intron 1 of 9)	intron (NR_045558, intron 1 of 9)	-1378.0	NM_026028	67200.0	Mm.45767	NM_026028	ENSMUSG00000030177	Ccdc77	2400002C23Rik|2700091N06Rik|AV168274	coiled-coil domain containing 77	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-45906925-4	chr9	45906824	45907024	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310839)	promoter-TSS (NM_001310839)	-13.0	NM_001361112	235315.0	Mm.220945	NM_178709	ENSMUSG00000042790	Rnf214	D130054N24Rik	ring finger protein 214	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-29251699-4	chr19	29251600	29251800	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008413)	promoter-TSS (NM_008413)	-103.0	NM_001048177	16452.0	Mm.275839	NM_008413	ENSMUSG00000024789	Jak2	Fd17	Janus kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-33250260-3	chr4	33250045	33250245	+	800.6592410000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1358.0	NM_001033225	108767.0	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-68825009-6	chr2	68824859	68825059	+	863.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36482.0	NM_172856	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-103296272-2	chr6	103296172	103296372	+	802.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-214604.0	NM_007697	12661.0	Mm.251288	NM_007697	ENSMUSG00000030077	Chl1	A530023M13Rik|AI465420|CALL|LICAM2	cell adhesion molecule L1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139366649-2	chr5	139366549	139366749	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028469, intron 2 of 4)	ID_B1|SINE|B4	3096.0	NR_029768	723898.0		NR_029768	ENSMUSG00000065593	Mir339	Mirn339|mir-339|mmu-mir-339	microRNA 339	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-4032233-2	chr7	4032133	4032333	+	689.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001302675, intron 2 of 6)	Lx5b|LINE|L1	30971.0	NM_001302677	52855.0	Mm.290880	NM_178611	ENSMUSG00000055541	Lair1	5133400O11Rik|BB115266|D7Bwg0421e|Lair-1	leukocyte-associated Ig-like receptor 1	protein-coding	1.915243562665	1.0297392880134	1.01238363353878	1.94257523283584	1.56655939396234	1.76205106621174	1.56756632284782	1.51998553883994	0.100872713466588	0.933733887131024	0.998431161219273
Merged-chr12-110589866-2	chr12	110589766	110589966	+	607.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1508.0	NR_033340	319786.0	Mm.129691	NR_033340		B930059L03Rik	-	RIKEN cDNA B930059L03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-67133094-2	chr18	67132994	67133194	+	547.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010307)	promoter-TSS (NM_010307)	-466.0	NM_010307	14680.0	Mm.440746	NM_010307	ENSMUSG00000024524	Gnal	2610011C15Rik|9630020G10Rik|Galphaolf|Gna10|Golf	guanine nucleotide binding protein, alpha stimulating, olfactory type	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-50131366-4	chr11	50131243	50131443	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290759)	promoter-TSS (NM_001290759)	-17.0	NM_001290759	76795.0	Mm.290975	NM_029745	ENSMUSG00000036644	Tbc1d9b	-	TBC1 domain family, member 9B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115201211-1	chr11	115201111	115201311	+	541.0	f1_c57bl6.idr	intron (NM_001033393, intron 4 of 9)	intron (NM_001033393, intron 4 of 9)	13724.0	NM_001033393	320534.0	Mm.260587	NM_001033393	ENSMUSG00000045980	Tmem104	C630005D06Rik|mFLJ00021	transmembrane protein 104	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-77267985-2	chr2	77267885	77268085	+	752.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175465, intron 1 of 17)	intron (NM_175465, intron 1 of 17)	12607.0	NM_175465	228071.0	Mm.27120	NM_175465	ENSMUSG00000042272	Sestd1	1500031J16Rik|A930010O20|Solo/Trio8	SEC14 and spectrin domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-67232630-1	chr17	67232530	67232730	+	611.0	f1_balb.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	121829.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	-2.18233058068552	-2.15536956715525	-2.16352280018114	-2.04193253143548	-2.18043796738662	-2.15360272754651	-2.16167708693786	-2.16902129354933	-0.683654500252594	0.846597994014493	1
Merged-chr14-31456772-2	chr14	31456672	31456872	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20672.0	NM_011894	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-73413667-2	chr14	73413567	73413767	+	580.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-28378.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-77626117-1	chr10	77626017	77626217	+	556.0	f1_c57bl6.idr	intron (NM_019803, intron 1 of 5)	intron (NM_019803, intron 1 of 5)	3796.0	NM_019803	22213.0	Mm.458125	NM_019803	ENSMUSG00000009293	Ube2g2	1110003O05Rik|D10Xrf369|UBC7|Ubc7p	ubiquitin-conjugating enzyme E2G 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-27646972-2	chr10	27646872	27647072	+	803.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-30030.0	NM_008481	16773.0	Mm.256087	NM_008481	ENSMUSG00000019899	Lama2	5830440B04|dy|mKIAA4087|mer|merosin	laminin, alpha 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-90142314-3	chr7	90142246	90142446	+	666.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360867, intron 1 of 19)	intron (NM_001360867, intron 1 of 19)	12133.0	NM_001252520	233489.0	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	1.21402629108765	0.479937014622848	0.471097868509782	0.918583726640541	1.22843115597719	0.481920499082932	0.473053134461235	0.925008951780088	0.0374810693318548	0.98310615686912	1
Merged-chr14-73553595-2	chr14	73553495	73553695	+	592.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361638, intron 1 of 9)	intron (NM_001361638, intron 1 of 9)	809.0	NM_001361638	20916.0	Mm.38951	NM_011506	ENSMUSG00000022110	Sucla2	4930547K18Rik|A-SCS|SCS-betaA	succinate-Coenzyme A ligase, ADP-forming, beta subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-40680586-4	chr4	40680491	40680691	+	807.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22325.0	NM_025545	66408.0	Mm.430710	NM_025545	ENSMUSG00000028411	Aptx	2410016G21Rik|AA388047|FHA-HIT	aprataxin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-24698856-4	chr13	24698732	24698932	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080381, intron 13 of 14)	intron (NM_001080381, intron 13 of 14)	60184.0	NM_029679	193385.0	Mm.217319	NM_029679	ENSMUSG00000036006	Ripor2	Fam65b	RHO family interacting cell polarization regulator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-44203499-2	chr5	44203399	44203599	+	593.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_173764, intron 3 of 13)	intron (NM_173764, intron 3 of 13)	23107.0	NM_173764	231225.0	Mm.30688	NM_173764	ENSMUSG00000046985	Tapt1	4932414K18Rik	transmembrane anterior posterior transformation 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-100426468-4	chr12	100426359	100426559	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033213, intron 5 of 19)	intron (NM_001033213, intron 5 of 19)	94363.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-9140434-4	chr15	9140312	9140512	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013787)	promoter-TSS (NM_013787)	42.0	NM_013787	27401.0	Mm.35584	NM_013787	ENSMUSG00000054115	Skp2	4930500A04Rik|FBXL1|FWD1|p45	S-phase kinase-associated protein 2 (p45)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-45110788-3	chr16	45110748	45110948	+	707.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026439, intron 3 of 7)	RMER5|LTR|ERV1	16837.0	NM_026439	67896.0	Mm.181074	NM_026439	ENSMUSG00000022665	Ccdc80	2610001E17Rik|DRO1|Ssg1|Urb	coiled-coil domain containing 80	protein-coding	-0.673477103842641	-0.660686067377255	-0.470148220668249	-0.668086753545967	0.252090334087656	-0.659748875397976	-0.663934488339033	-0.667521460089111	2.63287237656162	0.345960334797176	1
Merged-chr7-28394127-2	chr7	28394027	28394227	+	678.099976	f1_balb.idr|f1_c57bl6.idr	intron (NM_019458, intron 2 of 13)	B2_Mm2|SINE|B2	1131.0	NM_019458	54624.0	Mm.7916	NM_019458	ENSMUSG00000003437	Paf1	5730511K23Rik|AA675045	Paf1, RNA polymerase II complex component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-98509486-2	chr15	98509386	98509586	+	901.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	10348.0	NR_034051	100217417.0	Mm.486440	NR_034051	ENSMUSG00000065336	Snora34	MBI-89	small nucleolar RNA, H/ACA box 34	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-21688524-2	chr10	21688424	21688624	+	609.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2321.0	NR_045843	432436.0	Mm.244553	NM_001004162	ENSMUSG00000056716	Gm5420	EG432436	predicted gene 5420	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-86964765-4	chr17	86964679	86964879	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145491, intron 2 of 4)	intron (NM_145491, intron 2 of 4)	1668.0	NM_145491	104215.0	Mm.826	NM_145491	ENSMUSG00000024143	Rhoq	Arhq|TC10A|Tc10	ras homolog family member Q	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-123867772-2	chr9	123867672	123867872	+	666.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5743.0	NM_011798	23832.0	Mm.390241	NM_011798	ENSMUSG00000060509	Xcr1	Ccxcr1|Gpr5|mXcr1	chemokine (C motif) receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-36846942-2	chr17	36846850	36847050	+	614.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025599, intron 2 of 9)	intron (NM_001025599, intron 2 of 9)	9804.0	NM_001286726	22670.0	Mm.34587	NM_030698	ENSMUSG00000024457	Trim26	AI462198|Zfp173|Zfp1736	tripartite motif-containing 26	protein-coding	0.909894406017543	0.988750903513006	2.28711527382186	0.944262761887395	1.31883743802855	2.09370643607935	2.3073785056588	1.94369611061014	1.38594619375548	0.274964970423168	0.779421101386951
Merged-chr13-55016163-2	chr13	55016063	55016263	+	612.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001206392, intron 1 of 17)	intron (NM_001206392, intron 1 of 17)	4656.0	NM_001206390	212032.0	Mm.267479	NM_001033245	ENSMUSG00000025877	Hk3	HK III|HK-III	hexokinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-69006517-3	chr3	69006416	69006616	+	749.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356976, intron 2 of 23)	intron (NM_001356976, intron 2 of 23)	1778.0	NM_133786	70099.0	Mm.206841	NM_133786	ENSMUSG00000034349	Smc4	2500002A22Rik|C79747|SMC-4|Smc4l1	structural maintenance of chromosomes 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-95639030-4	chr9	95638931	95639131	+	930.94165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029620, intron 2 of 8)	intron (NM_029620, intron 2 of 8)	1403.0	NM_029620	76477.0	Mm.46016	NM_029620	ENSMUSG00000015354	Pcolce2	2400001O18Rik|Pcpe2	procollagen C-endopeptidase enhancer 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-113638494-4	chr6	113638413	113638613	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172161)	promoter-TSS (NM_172161)	46.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-93163861-2	chr5	93163761	93163961	+	946.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001009818, intron 7 of 9)	intron (NM_001009818, intron 7 of 9)	42634.0	NM_017367	12453.0	Mm.250419	NM_017367	ENSMUSG00000063015	Ccni	-	cyclin I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-13644381-4	chr8	13644335	13644535	+	961.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 1 of 23)	intron (NM_009025, intron 1 of 23)	33152.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	2.39661697645209	1.66884547104099	1.99682227581168	2.21427312043358	2.4164728792402	1.67922318604107	2.61888244286798	2.91553631078602	0.890876066554606	0.313028511717106	0.81480678700792
Merged-chr13-96435908-4	chr13	96435808	96436008	+	907.087524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001042714, exon 8 of 14)	exon (NM_001042714, exon 8 of 14)	35252.0	NM_001042714	271144.0	Mm.470057	NM_001042714	ENSMUSG00000047117	Ankdd1b	9330128J19Rik	ankyrin repeat and death domain containing 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-157046991-3	chr1	157046847	157047047	+	784.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61703.0	NM_001305059	73435.0	Mm.116705	NM_028540	ENSMUSG00000026592	Tex35	1700057K13Rik	testis expressed 35	protein-coding	2.05658421721892	1.46777952861	2.8671677700717	2.70513306288893	2.58876287454734	2.16007299625585	2.38148585555627	2.87839969551203	0.288032023688814	0.738731499187291	0.998431161219273
Merged-chr7-19748092-2	chr7	19747992	19748192	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008990, intron 1 of 8)	intron (NM_008990, intron 1 of 8)	1481.0	NM_008990	19294.0	Mm.4341	NM_008990	ENSMUSG00000062300	Nectin2	AI325026|AI987993|Cd112|MPH|Pvr|Pvrl2|Pvs|nectin-2	nectin cell adhesion molecule 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131462802-3	chr1	131462698	131462898	+	700.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081011, intron 2 of 22)	intron (NM_001081011, intron 2 of 22)	64563.0	NM_001081011	14270.0	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-64052950-2	chr15	64052850	64053050	+	685.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360037, intron 1 of 11)	intron (NM_001360037, intron 1 of 11)	6814.0	NM_001360038	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-53255523-4	chr18	53255437	53255637	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029394, intron 1 of 6)	intron (NM_029394, intron 1 of 6)	9875.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-147092152-2	chr6	147092052	147092252	+	783.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081237, exon 1 of 3)	exon (NM_001081237, exon 1 of 3)	1077.0	NM_001081237	232539.0	Mm.491206	NM_001081237	ENSMUSG00000040102	Klhl42	A330079N23Rik|AI450355|C230080I20Rik|Ctb9|Klhdc5|mKIAA1340	kelch-like 42	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-90909813-2	chr5	90909713	90909913	+	654.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M5|LINE|L1	5914.0	NM_009140	20310.0	Mm.4979	NM_009140	ENSMUSG00000058427	Cxcl2	CINC-2a|GROb|Gro2|MIP-2|MIP-2a|Mgsa-b|Mip2|Scyb|Scyb2	chemokine (C-X-C motif) ligand 2	protein-coding	-1.28025741253843	-1.25296595648262	-1.2630259255951	-1.2712894837512	-1.0104656993792	-1.25078591920978	-1.26074856909628	-0.971423026503385	2.3133467066417	0.490836719666531	1
Merged-chr2-93188614-2	chr2	93188514	93188714	+	704.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025246, intron 1 of 7)	CpG	1066.0	NM_001025246	277414.0	Mm.41033	NM_001025246	ENSMUSG00000068735	Trp53i11	Tp53i11	transformation related protein 53 inducible protein 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-130467613-2	chr2	130467513	130467713	+	829.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355161, intron 1 of 21)	MTD|LTR|ERVL-MaLR	17335.0	NM_001355161	19262.0	Mm.224246	NM_008980	ENSMUSG00000027303	Ptpra	Ptpa|Ptpalpha|Rptpalpha|Rptra|Rptralpha	protein tyrosine phosphatase, receptor type, A	protein-coding	1.45462145112701	2.33678699927816	3.60876303508044	3.6588053325895	1.46993769033569	1.3694213324113	2.42469410085889	3.52629028531532	-0.906253071413723	0.346866612690486	0.847437850938575
Merged-chr2-125571544-2	chr2	125571444	125571644	+	554.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081091, intron 23 of 27)	intron (NM_001081091, intron 23 of 27)	53569.0	NM_001081091	99100.0	Mm.330545	NM_001081091	ENSMUSG00000068394	Cep152	AI851464|mKIAA0912	centrosomal protein 152	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-83884383-4	chr7	83884260	83884460	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030705)	promoter-TSS (NM_030705)	-19.0	NM_030705	80889.0	Mm.272998	NM_030705	ENSMUSG00000070462	Tlnrd1	AW061151|Mesdc1	talin rod domain containing 1	protein-coding	1.8023814678	3.28766887029844	3.26636507049159	0.638060817219234	0.587061872740343	0.720760710626841	0.680675535149324	0.644046953528324	-6.1202926497498	0.0108834397123468	0.115625303720841
Merged-chr18-78013635-2	chr18	78013535	78013735	+	608.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001195633, intron 30 of 43)	intron (NM_001195633, intron 30 of 43)	43633.0	NM_001101038	620235.0	Mm.35607	NM_001101038	ENSMUSG00000091055	Siglec15	Cd33l3|EG620235|SIGLEC-I	sialic acid binding Ig-like lectin 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115504388-2	chr5	115504289	115504489	+	600.083374	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-2287.0	NM_011223	19303.0	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	2.21710399043294	2.17016674210106	1.15239808018701	2.02797749075981	2.40001821570083	2.86526594416351	1.15923351671811	1.38147621428363	0.468300252332282	0.672521235250257	0.99440487726309
Merged-chr12-116461382-4	chr12	116461286	116461486	+	911.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_133762, exon 29 of 29)	3' UTR (NM_133762, exon 29 of 29)	-24334.0	NM_011215	19276.0	Mm.206054	NM_011215	ENSMUSG00000056553	Ptprn2	4930425H11Rik|IA2beta|PTP-NP|Phol|mKIAA0387|phogrin	protein tyrosine phosphatase, receptor type, N polypeptide 2	protein-coding	3.72437758260373	3.90298498189391	2.04115142846567	3.28641633175238	3.58138012228619	4.23341965629153	3.31407721276312	3.75714013853232	0.522502518070114	0.385322695890294	0.876154616828737
Merged-chr7-100460896-3	chr7	100460786	100460986	+	915.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001017985, intron 32 of 32)	ORR1E|LTR|ERVL-MaLR	-12105.0	NM_009464	22229.0	Mm.6254	NM_009464	ENSMUSG00000032942	Ucp3	AI645527|Slc25a9|UCP-3	uncoupling protein 3 (mitochondrial, proton carrier)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-32163618-2	chr14	32163518	32163718	+	939.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033988, intron 1 of 9)	URR1B|DNA|hAT-Charlie	-1968.0	NM_001284319	27057.0	Mm.371598	NM_019744	ENSMUSG00000056234	Ncoa4	ARA70|Rfg	nuclear receptor coactivator 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-80373538-4	chr17	80373439	80373639	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028385)	promoter-TSS (NR_028385)	3.0	NR_028385	791338.0	Mm.204722	NR_028385		Gm10190	-	predicted gene 10190	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180810061-2	chr1	180809961	180810161	+	797.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008210, intron 3 of 3)	intron (NM_008210, intron 3 of 3)	3544.0	NM_008210	15078.0	Mm.138832	NM_008210	ENSMUSG00000060743	H3f3a	EyeLinc14|H3.3A	H3 histone, family 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-131190098-2	chr2	131189998	131190198	+	640.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111075, intron 3 of 14)	intron (NM_001111075, intron 3 of 14)	3150.0	NM_001111075	12531.0	Mm.38444	NM_023117	ENSMUSG00000027330	Cdc25b	AI604853	cell division cycle 25B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-136991457-2	chr5	136991357	136991557	+	876.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_030483)	promoter-TSS (NR_030483)	24.0	NR_030483	735283.0		NR_030483	ENSMUSG00000076240	Mir702	Mirn702|mir-702|mmu-mir-702	microRNA 702	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-11317557-4	chr16	11317461	11317661	+	847.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011608, intron 2 of 2)	L1MA9|LINE|L1	3752.0	NM_011608	21935.0	Mm.12935	NM_011608	ENSMUSG00000022496	Tnfrsf17	BCM|BCMA|Tnfrsf13|Tnfrsf13a	tumor necrosis factor receptor superfamily, member 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-59260947-4	chr3	59260868	59261068	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177855, intron 32 of 43)	intron (NM_177855, intron 32 of 43)	2017.0	NM_027571	70839.0	Mm.422675	NM_027571	ENSMUSG00000036353	P2ry12	2900079B22Rik|4921504D23Rik|P2Y12	purinergic receptor P2Y, G-protein coupled 12	protein-coding	3.71568071539436	4.50095131265296	4.02135076060388	3.97516997634917	4.17318632813667	4.18393681018306	4.29002741355622	3.55781112024516	0.00354036642617725	0.993698855640597	0.998431161219273
Merged-chr11-70655517-4	chr11	70655424	70655624	+	999.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011072)	promoter-TSS (NM_011072)	-874.0	NM_011072	18643.0	Mm.2647	NM_011072	ENSMUSG00000018293	Pfn1	Pfn	profilin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-102266156-2	chr7	102266056	102266256	+	603.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-1668.0	NM_009287	20866.0	Mm.645	NM_009287	ENSMUSG00000030987	Stim1	SIM	stromal interaction molecule 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-128240519-2	chr7	128240419	128240619	+	767.785767	f1_balb.idr|f1_c57bl6.idr	exon (NM_146205, exon 3 of 6)	exon (NM_146205, exon 3 of 6)	-2488.0	NM_177001	100043133.0	Mm.183647	NM_177001	ENSMUSG00000062944	9130023H24Rik	GLI4	RIKEN cDNA 9130023H24 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-43670285-4	chr7	43670179	43670379	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-1752.0	NM_145582	233189.0	Mm.26514	NM_145582	ENSMUSG00000038888	Ctu1	Atpbd3|BC005752	cytosolic thiouridylase subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167808004-2	chr2	167807904	167808104	+	573.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	116827.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-31772766-3	chr5	31772656	31772856	+	684.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144541, intron 3 of 11)	L1ME1|LINE|L1	74706.0	NM_144541	107976.0	Mm.482126	NM_144541	ENSMUSG00000052139	Babam2	6030405P19Rik|AI429776|B830038C02Rik|Bre	BRISC and BRCA1 A complex member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-32017776-4	chr12	32017672	32017872	+	948.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011158, intron 2 of 10)	intron (NM_011158, intron 2 of 10)	43507.0	NM_011158	19088.0	Mm.25594	NM_011158	ENSMUSG00000002997	Prkar2b	AI451071|AW061005|PKARIIbeta|Pkarb2|RII(beta)	protein kinase, cAMP dependent regulatory, type II beta	protein-coding	3.00166030900679	2.0548854711891	3.3199209728554	3.35188398826765	2.62967938215057	1.54156098998115	2.19221702359363	2.94903292607679	-1.10488915806575	0.170724396574004	0.638248227075685
Merged-chr10-96239082-1	chr10	96238982	96239182	+	745.5	f0_balb.idr	intron (NR_110448, intron 1 of 2)	intron (NR_110448, intron 1 of 2)	12875.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-151997784-4	chr1	151997677	151997877	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197990, intron 2 of 5)	intron (NM_197990, intron 2 of 5)	92543.0	NM_197990	69399.0	Mm.278031	NM_197990	ENSMUSG00000032666	1700025G04Rik	2610510E02Rik|2900042O04Rik	RIKEN cDNA 1700025G04 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167803623-2	chr2	167803523	167803723	+	846.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	112446.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-8760065-4	chr11	8759985	8760185	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-95550.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117470483-4	chr8	117470347	117470547	+	724.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11182.0	NR_106046	102465653.0		NR_106046	ENSMUSG00000098483	Mir7078	Gm27386|mmu-mir-7078	microRNA 7078	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71178259-2	chr17	71178159	71178359	+	640.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA5|LINE|L1	-5273.0	NM_001357791	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-8333921-2	chr9	8333821	8334021	+	878.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	87135.0	NR_035437	100316772.0		NR_035437	ENSMUSG00000084747	Mir1899	Mirn1899|mmu-mir-1899	microRNA 1899	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-108691291-2	chr8	108691191	108691391	+	989.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23353.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-22398922-4	chr16	22398842	22399042	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358428, intron 9 of 12)	intron (NM_001358428, intron 9 of 12)	39426.0	NM_001358428	104156.0	Mm.155708	NM_023794	ENSMUSG00000013089	Etv5	1110005E01Rik|8430401F14Rik|ERM	ets variant 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-106328214-3	chr1	106328163	106328363	+	733.972229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133821, intron 4 of 16)	intron (NM_133821, intron 4 of 16)	156394.0	NM_133821	98432.0	Mm.24115	NM_133821	ENSMUSG00000044340	Phlpp1	AI836256|Phlpp|Plekhe1|SCOP|mKIAA0606	PH domain and leucine rich repeat protein phosphatase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-33433996-4	chr12	33433907	33434107	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172253, intron 2 of 3)	intron (NM_172253, intron 2 of 3)	4383.0	NM_172253	28071.0	Mm.196472	NM_172253	ENSMUSG00000020561	Twistnb	2410173G11|2810024J17Rik|D16Wsu83e	twist basic helix-loop-helix transcription factor 1 neighbor	protein-coding	2.53765238863385	2.98167325095164	1.46933362162302	3.58202236172606	2.92876345006577	3.37328282720893	1.48140920838268	3.30336415400445	0.165526911476212	0.851067998762988	0.998431161219273
Merged-chr3-79221885-2	chr3	79221807	79222007	+	634.5	f0_balb.idr|f1_c57bl6.idr	intron (NR_045502, intron 1 of 2)	intron (NR_045502, intron 1 of 2)	8988.0	NR_045502	70924.0	Mm.444622	NR_045502	ENSMUSG00000104585	4921511C10Rik	-	RIKEN cDNA 4921511C10 gene	ncRNA	2.76478363782678	1.26276866398409	1.50517050869438	3.05046434900506	2.72034766786939	3.06651702298144	1.23153741123092	1.69154859750464	0.0218568815647585	0.983640885532072	0.998431161219273
Merged-chr4-58985313-3	chr4	58985207	58985407	+	732.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025968, intron 1 of 9)	intron (NM_025968, intron 1 of 9)	1771.0	NM_025968	67103.0	Mm.34497	NM_025968	ENSMUSG00000028378	Ptgr1	2510002C21Rik|Ltb4dh|Zadh3	prostaglandin reductase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-88675441-6	chr5	88675311	88675511	+	981.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178700, intron 1 of 9)	CpG	169.0	NM_001098476	231413.0	Mm.332474	NM_178700	ENSMUSG00000044221	Grsf1	BB232551|C80280|D5Wsu31e	G-rich RNA sequence binding factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-90213401-2	chr9	90213301	90213501	+	922.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 10 of 12)	intron (NM_194334, intron 10 of 12)	50423.0	NM_001311115	108153.0	Mm.102141	NM_001003911	ENSMUSG00000032363	Adamts7	ADAM-TS7|ADAMTS7B	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-4865256-3	chr7	4865161	4865361	+	952.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026158, intron 1 of 5)	B2_Mm2|SINE|B2	918.0	NM_026158	67441.0	Mm.41385	NM_026158	ENSMUSG00000052605	Isoc2b	0610042E07Rik|AI553388|Isoc2	isochorismatase domain containing 2b	protein-coding	-1.27480050717774	-0.604729833679879	-1.25573295904267	-1.26493563944758	-1.27428069156472	-1.24210192204986	-1.25319678955844	-1.26328836405502	-2.6632876257018	0.439827081912762	1
Merged-chr2-83725556-3	chr2	83725447	83725647	+	773.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008402, intron 1 of 29)	intron (NM_008402, intron 1 of 29)	1150.0	NM_008402	16410.0	Mm.227	NM_008402	ENSMUSG00000027087	Itgav	1110004F14Rik|2610028E01Rik|CD51|D430040G12Rik	integrin alpha V	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-89872380-4	chr9	89872303	89872503	+	751.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37372.0	NM_001357744	19417.0	Mm.44561	NM_011245	ENSMUSG00000032356	Rasgrf1	AI844718|CDC25|CDC25Mm|Gnrp|Grf1|Grfbeta|P190-A|Ras-GRF1|p190|p190RhoGEF	RAS protein-specific guanine nucleotide-releasing factor 1	protein-coding	0.0434167756309831	-0.496267531085851	-0.499971334865586	-0.502823233414139	0.0546277025787766	-0.495431500287674	-0.499155146778299	-0.502325373264262	0.0419527451125213	0.988073760716967	1
Merged-chr7-116459297-4	chr7	116459166	116459366	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15808.0	NM_011083	18704.0	Mm.3810	NM_011083	ENSMUSG00000030660	Pik3c2a	Cpk-m|PI3KC2	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-14137285-2	chr12	14137185	14137385	+	779.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14753.0	NM_029007	105005.0	Mm.227253	NM_029007	ENSMUSG00000020607	Fam84a	2310003N02Rik|4731402F03Rik|AW125753|Nse1	family with sequence similarity 84, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-122231359-4	chr7	122231267	122231467	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	HERVL74-int|LTR|ERVL	11871.0	NM_027363	70261.0	Mm.96997	NM_027363	ENSMUSG00000030865	Chp2	2010110P09Rik|Cbhp2	calcineurin-like EF hand protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-53891844-4	chr11	53891742	53891942	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011396)	promoter-TSS (NM_011396)	-139.0	NM_011396	20520.0	Mm.42253	NM_011396	ENSMUSG00000018900	Slc22a5	Lstpl|Octn2|jvs	solute carrier family 22 (organic cation transporter), member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55748649-2	chr14	55748549	55748749	+	853.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026403, intron 2 of 9)	intron (NM_026403, intron 2 of 9)	2956.0	NM_026403	67842.0	Mm.180338	NM_026403	ENSMUSG00000019297	Nop9	2610027L16Rik	NOP9 nucleolar protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44798444-2	chr9	44798344	44798544	+	734.666626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_138951)	TTS (NM_138951)	803.0	NM_001357385	71687.0	Mm.41409	NM_027865	ENSMUSG00000002032	Tmem25	0610039J01Rik|AI429491	transmembrane protein 25	protein-coding	1.630322550241	1.72957612895411	0.895445465623715	1.60842994773462	1.6460333707589	2.53439765797965	0.900414348563235	0.88086275136252	0.564122181262763	0.667044127103607	0.992549218580075
Merged-chr19-45737102-3	chr19	45737006	45737206	+	636.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010205, exon 5 of 5)	exon (NM_010205, exon 5 of 5)	5778.0	NM_001166361	14179.0	Mm.4012	NM_010205	ENSMUSG00000025219	Fgf8	Aigf|Fgf-8	fibroblast growth factor 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140829427-5	chr5	140829356	140829556	+	726.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010302, intron 1 of 3)	ID_B1|SINE|B4	975.0	NM_010302	14673.0	Mm.370185	NM_010302	ENSMUSG00000000149	Gna12	AI414047|AI504261|Galpha12	guanine nucleotide binding protein, alpha 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-69193474-4	chr8	69193386	69193586	+	947.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15560.0	NM_001013379	234358.0	Mm.334577	NM_001013379	ENSMUSG00000059897	Zfp930	-	zinc finger protein 930	protein-coding	0.412664553559816	0.473650777202878	0.45367457794634	0.671367872486757	0.791887068160034	0.305957916672638	0.301057799145039	0.676737720811064	0.281555529833005	0.871810408379901	1
Merged-chr7-110014464-4	chr7	110014367	110014567	+	757.575012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	-3784.0	NM_181517	233726.0	Mm.222328	NM_181517	ENSMUSG00000066232	Ipo7	A330055O14Rik|C330016G14|Imp7|Ranbp7	importin 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128703045-2	chr2	128702945	128703145	+	718.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 1 of 18)	MTD|LTR|ERVL-MaLR	4130.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-80839846-4	chr12	80839755	80839955	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178682, intron 2 of 5)	MTE2b|LTR|ERVL-MaLR	49323.0	NM_001242419	217684.0	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-116975206-4	chr2	116975132	116975332	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	75080.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-34564561-4	chr1	34564470	34564670	+	977.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3627.0	NM_009356	21756.0	Mm.14418	NM_009356	ENSMUSG00000037529	Prss40	Tesp2	protease, serine 40	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-54398054-4	chr14	54397946	54398146	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011405, intron 4 of 11)	intron (NM_011405, intron 4 of 11)	11426.0	NM_001253680	20540.0	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	4.41864753259825	3.932851318944	3.80201413649042	4.38636971462385	4.68159369802082	3.69969714588955	3.47560743072234	3.85909066274828	-0.186570090917709	0.695225129845996	0.997870549741095
Merged-chr19-6859011-2	chr19	6858911	6859111	+	544.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081291)	promoter-TSS (NM_001081291)	-800.0	NM_001081291	78317.0	Mm.329596	NM_198008	ENSMUSG00000047810	Ccdc88b	2610041P08Rik|Ccdc88	coiled-coil domain containing 88B	protein-coding	0.165390052281399	0.812450459757539	0.178945707607675	0.486669959855868	0.166652546174461	0.823873648969268	0.18039705140083	0.491460752153135	0.0362039499132188	0.98542218723026	1
Merged-chr18-21122128-4	chr18	21122032	21122232	+	844.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49788.0	NM_008586	17288.0	Mm.2682	NM_008586	ENSMUSG00000024313	Mep1b	Mep-1b	meprin 1 beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-145828977-2	chr6	145828877	145829077	+	897.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20594.0	NM_027760	71323.0	Mm.158669	NM_027760	ENSMUSG00000030259	Rassf8	5133400D11Rik|AA815821|AW123240|Hoj1|mHoj-1	Ras association (RalGDS/AF-6) domain family (N-terminal) member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-74484175-3	chr11	74484087	74484287	+	742.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001015046, intron 3 of 24)	intron (NM_001015046, intron 3 of 24)	105971.0	NM_001015046	380711.0	Mm.425690	NM_001015046	ENSMUSG00000038807	Rap1gap2	AU067654|Garnl4|Gm1561|mKIAA1039	RAP1 GTPase activating protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-86798243-2	chr17	86798143	86798343	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010137, intron 2 of 15)	intron (NM_010137, intron 2 of 15)	44379.0	NM_010137	13819.0	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-95503673-2	chr10	95503573	95503773	+	580.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR31A_MM|LTR|ERVK	-1724.0	NM_001359477	67270.0	Mm.30008	NM_026065	ENSMUSG00000062981	Mrpl42	2700009F22Rik|2900055D03Rik|D10Ertd322e|HSPC204|L31mt|L42mt|MRP-L31|MRP-L42|MRP-S32|PTD007|Rpml31|S32mt	mitochondrial ribosomal protein L42	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-12472117-4	chr19	12472016	12472216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172442, intron 8 of 8)	intron (NM_172442, intron 8 of 8)	11337.0	NM_010821	17476.0	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	6.24915533639199	5.62691515349315	5.57905071541193	6.02531791295344	6.03423783746977	6.1035216659828	6.53903960490029	5.74453026804318	0.247478538134176	0.340302467506501	0.840985121439433
Merged-chr1-134093167-4	chr1	134093108	134093308	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-14053.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84147941-4	chr8	84147839	84148039	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145970)	promoter-TSS (NM_145970)	-99.0	NM_001163752	74666.0	Mm.33625	NM_029045	ENSMUSG00000008129	4930432K21Rik	-	RIKEN cDNA 4930432K21 gene	protein-coding	1.60253764451995	1.51497623526869	1.01698558326482	0.99367693429415	1.76542462341546	0.829364468527588	1.02357609005501	1.15918853300314	-0.210479107120512	0.873433395092175	0.998431161219273
Merged-chr19-29064000-4	chr19	29063860	29064060	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3341.0	NR_045687	100503337.0	Mm.103412	NR_045687		Gm9895	-	predicted gene 9895	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98944593-2	chr11	98944493	98944693	+	937.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177303, intron 1 of 8)	ID_B1|SINE|B4	4882.0	NM_001177303	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-65681505-1	chr18	65681405	65681605	+	595.0	f1_c57bl6.idr	intron (NM_001361052, intron 6 of 8)	intron (NM_001361052, intron 6 of 8)	-16763.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	-0.018428299456068	-0.412147025029377	-0.417071563349878	-0.420888922836122	-0.42631078946548	-0.411040519363768	0.503638071730306	-0.420220894436017	1.6114860500234	0.542684004153087	1
Merged-chr10-61476852-2	chr10	61476752	61476952	+	638.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153542, intron 1 of 4)	intron (NM_153542, intron 1 of 4)	1019.0	NM_153542	216011.0	Mm.136116	NM_153542	ENSMUSG00000037151	Lrrc20	BC036304	leucine rich repeat containing 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-15845499-2	chr6	15845399	15845599	+	986.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	124838.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-53378305-2	chr10	53378205	53378405	+	700.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001204983, intron 1 of 12)	intron (NM_001204983, intron 1 of 12)	1546.0	NM_001204983	100038725.0	Mm.441403	NM_001204983	ENSMUSG00000038594	Cep85l	Gm9766	centrosomal protein 85-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-88738676-1	chr4	88738576	88738776	+	562.0	f0_balb.idr	Intergenic	B3|SINE|B2	-16168.0	NM_172871	242521.0	Mm.260601	NM_172871	ENSMUSG00000070923	Klhl9	8030469P05|C530050O22Rik|mKIAA1354	kelch-like 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-85838236-4	chr1	85838144	85838344	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355046, intron 5 of 9)	intron (NM_001355046, intron 5 of 9)	44227.0	NM_001355047	12283.0	Mm.26135	NM_133781	ENSMUSG00000036707	Cab39	AA408805|AA960512|C78372|MO25|MO25alpha	calcium binding protein 39	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-102024159-2	chr7	102024059	102024259	+	946.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_029211, intron 6 of 8)	intron (NM_029211, intron 6 of 8)	-6004.0	NM_010531	16068.0	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-21717385-4	chr5	21717249	21717449	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15-int|LTR|ERVL	-15727.0	NM_001359965	242864.0	Mm.153292	NM_178728	ENSMUSG00000044968	Napepld	A530089G06|Mbldc1|NAPE-PLD	N-acyl phosphatidylethanolamine phospholipase D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-59864890-3	chr4	59864793	59864993	+	956.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172468, intron 2 of 8)	intron (NM_172468, intron 2 of 8)	50163.0	NM_021053	30936.0	Mm.284433	NM_021053	ENSMUSG00000028386	Slc46a2	5430429N04Rik|Ly110|TSO-1C12|Tscot	solute carrier family 46, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-110822563-4	chr12	110822463	110822663	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011973, intron 4 of 11)	intron (NM_011973, intron 4 of 11)	18376.0	NM_011973	26448.0	Mm.140948	NM_011973	ENSMUSG00000056458	Mok	RAGE1|Rage|Stk30	MOK protein kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-46892169-2	chr17	46892069	46892269	+	665.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_178385, exon 1 of 1)	3' UTR (NM_178385, exon 1 of 1)	1548.0	NM_178385	72726.0	Mm.33780	NM_178385	ENSMUSG00000036430	Tbcc	2810055C19Rik	tubulin-specific chaperone C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-45813427-3	chr19	45813311	45813511	+	604.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145703, intron 1 of 9)	intron (NM_145703, intron 1 of 9)	-1120.0	NM_001276358	80906.0	Mm.213204	NM_030716	ENSMUSG00000025221	Kcnip2	KChIP2	Kv channel-interacting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-74125401-4	chr1	74125297	74125497	+	902.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027884)	promoter-TSS (NM_027884)	-144.0	NM_001170641	435626.0	Mm.240447	NM_001034060	ENSMUSG00000061815	Rufy4	F930048N03Rik	RUN and FYVE domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78596636-2	chr15	78596536	78596736	+	632.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028195)	promoter-TSS (NM_028195)	-411.0	NM_028195	72318.0	Mm.32911	NM_028195	ENSMUSG00000018008	Cyth4	2510004M07Rik|5830469K17Rik|AI467541|Pscd4|mFLJ00017	cytohesin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-57463482-2	chr8	57463382	57463582	+	670.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009136, intron 1 of 2)	intron (NM_009136, intron 1 of 2)	7559.0	NM_009136	20284.0	Mm.12886	NM_009136	ENSMUSG00000031610	Scrg1	AW124307	scrapie responsive gene 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-83716742-2	chr8	83716642	83716842	+	610.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_197982, intron 1 of 10)	intron (NM_197982, intron 1 of 10)	1565.0	NM_197982	68278.0	Mm.28222	NM_197982	ENSMUSG00000005481	Ddx39	2610307C23Rik|BAT1|DDXL|Ddx39a|URH49	DEAD (Asp-Glu-Ala-Asp) box polypeptide 39	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-104370835-2	chr7	104370730	104370930	+	598.0	f0_c57.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-12184.0	NM_175648	244183.0	Mm.347647	NM_175648	ENSMUSG00000052749	Trim30b	A530023O14Rik|Trim30-1	tripartite motif-containing 30B	protein-coding	0.0410945188614645	0.0587110441407536	0.625257924772703	0.682439387910864	0.527884592600813	0.0600093058038762	0.0542192886508634	0.0492737878602887	-1.39727395820346	0.528870644516012	1
Merged-chr9-96396643-4	chr9	96396573	96396773	+	895.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32242.0	NM_001357212	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	0.372085292918749	0.426130783933655	0.409111188454485	1.15209316425497	0.375653429297026	0.429884444556138	1.35251749936354	2.14988226110151	2.4539178500994	0.421169431148753	0.900322118218157
Merged-chr2-30952944-4	chr2	30952842	30953042	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133673)	promoter-TSS (NM_133673)	-59.0	NM_133673	30934.0	Mm.249164	NM_133673	ENSMUSG00000026848	Tor1b	2610016F05Rik|DQ1|torsinB	torsin family 1, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-6011825-4	chr15	6011738	6011938	+	890.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1VL4|LINE|L1	32866.0	NR_155428	105245876.0	Mm.128197	NR_155428		Gm41259	-	predicted gene, 41259	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35197258-3	chr17	35197131	35197331	+	756.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008518)	TTS (NM_008518)	2259.0	NR_105939	102465588.0		NR_105939	ENSMUSG00000098291	Mir6973a	Gm27967|mmu-mir-6973a	microRNA 6973a	ncRNA	-1.2087802031865	-1.18255559123277	-1.1934648774972	-1.20242609004962	-1.0572203610596	-0.684244446803552	-1.19099525421168	-1.20082203728721	2.61682731156801	0.42085555974408	1
Merged-chr7-73560881-2	chr7	73560781	73560981	+	740.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-2486.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-19401210-1	chr5	19401110	19401310	+	582.0	f0_balb.idr	intron (NM_001170746, intron 1 of 22)	intron (NM_001170746, intron 1 of 22)	174164.0	NM_001170746	50791.0	Mm.332231	NM_015823	ENSMUSG00000040003	Magi2	AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705	membrane associated guanylate kinase, WW and PDZ domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-46880004-4	chr17	46879898	46880098	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-10623.0	NM_178385	72726.0	Mm.33780	NM_178385	ENSMUSG00000036430	Tbcc	2810055C19Rik	tubulin-specific chaperone C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35246190-6	chr17	35246014	35246214	+	851.3472289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019693, intron 4 of 10)	intron (NM_019693, intron 4 of 10)	2039.0	NR_105941	102465589.0		NR_105941	ENSMUSG00000098499	Mir6975	Gm27693|mmu-mir-6975	microRNA 6975	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-138754957-4	chr5	138754821	138755021	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030565)	promoter-TSS (NM_030565)	-160.0	NM_030565	80752.0	Mm.320355	NM_030565	ENSMUSG00000025854	Fam20c	C76981|DMP-4|DMP4|GEF-CK|mKIAA4081	family with sequence similarity 20, member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94850150-2	chr10	94850050	94850250	+	876.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_018797, intron 10 of 30)	intron (NM_018797, intron 10 of 30)	94428.0	NM_018797	54712.0	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-105163374-2	chr4	105163274	105163474	+	650.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_080555, intron 1 of 5)	intron (NM_080555, intron 1 of 5)	6027.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	0.667933029444371	1.44246852177318	0.0963594611401417	0.0887081384782483	0.425103503163388	0.10827632445531	0.0985252221513741	0.0900534085077353	-2.98530114029833	0.145594938094208	1
Merged-chr7-45095597-4	chr7	45095497	45095697	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357117, intron 4 of 6)	intron (NM_001357117, intron 4 of 6)	-3384.0	NM_001355045	52377.0	Mm.29997	NM_026555	ENSMUSG00000019539	Rcn3	6030455P07Rik|D530026G20Rik|D7Ertd671e|RLP49	reticulocalbin 3, EF-hand calcium binding domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27747224-2	chr2	27747124	27747324	+	927.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290481, intron 4 of 9)	intron (NM_001290481, intron 4 of 9)	36641.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41326717-2	chr19	41326617	41326817	+	686.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 6 of 16)	intron (NM_031376, intron 6 of 16)	58353.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91461886-4	chr16	91461787	91461987	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3217.0	NR_077219	100503120.0	Mm.387130	NR_077219	ENSMUSG00000084866	A930006K02Rik	-	RIKEN cDNA A930006K02 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129431520-3	chr2	129431412	129431612	+	785.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60373.0	NM_008361	16176.0	Mm.222830	NM_008361	ENSMUSG00000027398	Il1b	IL-1beta|Il-1b	interleukin 1 beta	protein-coding	0.00713621397775985	0.588275178633129	-0.260906875999094	-0.264746830582856	0.0138950841129621	-0.254822801702423	-0.259810498626072	-0.264075462077953	-2.20249520443698	0.361084962518625	1
Merged-chr17-5594910-2	chr17	5594810	5595010	+	690.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	102310.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-109445829-2	chr11	109445729	109445929	+	639.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_040680, intron 1 of 1)	intron (NR_040680, intron 1 of 1)	5751.0	NR_040680	100503496.0	Mm.265874	NR_040680		Gm45916	-	predicted gene, 45916	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-89885345-4	chr13	89885243	89885443	+	839.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028012, intron 7 of 7)	B3|SINE|B2	-142831.0	NM_001134475	13003.0	Mm.158700	NM_019389	ENSMUSG00000021614	Vcan	5430420N07Rik|9430051N09|Cspg2|DPEAAE|NG2|PG-M|PG-M(V0)|PG-M(V1)|hdf	versican	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35235860-4	chr17	35235739	35235939	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023179)	promoter-TSS (NM_023179)	-24.0	NM_010909	18038.0	Mm.300795	NM_010909	ENSMUSG00000042419	Nfkbil1	Def-7|IKBL	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor like 1	protein-coding	4.49199995906065	4.94535746428818	5.39495691246493	4.79284316767423	4.25986975176381	3.93400186046011	5.13045051024845	4.65201967291105	-0.45584034586054	0.243583146345499	0.740751247850617
Merged-chr15-79689723-1	chr15	79689623	79689823	+	673.0	f1_balb.idr	Intergenic	Intergenic	-1173.0	NM_013818	14904.0	Mm.19080	NM_013818	ENSMUSG00000042535	Gtpbp1	AL022987|AW045683|C85212|GP-1|Gtpbp	GTP binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34633474-4	chr17	34633379	34633579	+	897.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3793.0	NM_030890	260297.0	Mm.390965	NM_030890	ENSMUSG00000015476	Prrt1	Bat-4|Bat4|D17H6S54E|DSPD1|G5b|NG5|ORF31|SynDIG4	proline-rich transmembrane protein 1	protein-coding	2.73949319032519	1.88749757117254	2.62996027211198	1.12150010451793	2.81875216779973	1.90254500249032	1.15548156207129	1.38416056563065	-0.535452390660135	0.632292815868269	0.982230082053879
Merged-chr8-72348986-1	chr8	72348886	72349086	+	583.0	f1_balb.idr	intron (NM_007944, intron 22 of 23)	intron (NM_007944, intron 22 of 23)	29924.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	-0.0734464537424518	-0.0493697281431153	-0.0571414648830099	-0.063213214155766	-0.0719116335462566	-0.0476326297031281	0.840334286307084	0.954347164380537	4.29709711819056	0.0558535114058108	1
Merged-chr6-72165893-3	chr6	72165797	72165997	+	879.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-42700.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-121618971-4	chr5	121618880	121619080	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178799)	promoter-TSS (NM_178799)	-42.0	NM_178799	338350.0	Mm.482918	NM_178799	ENSMUSG00000042647	Acad12	9330129D05Rik	acyl-Coenzyme A dehydrogenase family, member 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-16226286-3	chr9	16226211	16226411	+	652.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080814, intron 2 of 24)	intron (NM_001080814, intron 2 of 24)	151920.0	NM_001080814	270120.0	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT atypical cadherin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-146769757-3	chr5	146769613	146769813	+	594.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011669, intron 1 of 8)	intron (NM_011669, intron 1 of 8)	25243.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-144199392-2	chr1	144199292	144199492	+	638.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22020.0	NM_153171	246709.0	Mm.38271	NM_153171	ENSMUSG00000051079	Rgs13	-	regulator of G-protein signaling 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-108829914-4	chr6	108829821	108830021	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138677, intron 1 of 11)	intron (NM_138677, intron 1 of 11)	1280.0	NM_138677	192193.0	Mm.21596	NM_138677	ENSMUSG00000030104	Edem1	A130059K23Rik|EDEM|mKIAA0212	ER degradation enhancer, mannosidase alpha-like 1	protein-coding	4.28825105110954	3.48665624876596	2.88424623856914	4.24652656455744	3.77815462362538	3.16000970303565	4.01817947946524	3.96024399779734	-0.12146346028136	0.821445043376376	0.998431161219273
Merged-chr5-66105571-4	chr5	66105471	66105671	+	984.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127382, intron 2 of 7)	intron (NM_001127382, intron 2 of 7)	-7392.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165983761-3	chr2	165983605	165983805	+	849.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8932.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-119103949-2	chr9	119103849	119104049	+	559.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177117, intron 1 of 36)	intron (NM_177117, intron 1 of 36)	1471.0	NM_177117	320256.0	Mm.110648	NM_177117	ENSMUSG00000038060	Dlec1	D630005C06Rik	deleted in lung and esophageal cancer 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-77014911-3	chr16	77014822	77015022	+	907.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013918, intron 1 of 23)	intron (NM_013918, intron 1 of 23)	853.0	NM_013918	30940.0	Mm.40986	NM_013918	ENSMUSG00000022867	Usp25	-	ubiquitin specific peptidase 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-34869031-4	chr6	34868903	34869103	+	723.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197986, intron 1 of 1)	PB1D11|SINE|Alu	5857.0	NM_197986	68487.0	Mm.248440	NM_197986	ENSMUSG00000057137	Tmem140	1110007F12Rik	transmembrane protein 140	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-17276708-3	chr19	17276622	17276822	+	923.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	62783.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	2.05546494582187	1.13579476832287	0.727150649798364	1.03827162288256	0.463345752457775	0.509329588377526	0.494796216833903	0.706195745253257	-4.15887449102984	0.0103548296143977	0.111537740646747
Merged-chr7-80688914-7	chr7	80688815	80689015	+	942.828552	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173863)	promoter-TSS (NM_173863)	-38.0	NM_173863	70461.0	Mm.392175	NM_173863	ENSMUSG00000030527	Crtc3	2610312F20Rik|6332415K15Rik|AI429792|BC011210|TORC3	CREB regulated transcription coactivator 3	protein-coding	-0.362866553907953	-0.528114980053564	0.725361921093803	-0.539178968600251	-0.546152615801851	-0.526729845683853	-0.532943434929359	-0.538325767588849	-3.92432816360937	0.117176975001495	1
Merged-chr6-100210919-4	chr6	100210853	100211053	+	976.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	76405.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-87853254-4	chr11	87853181	87853381	+	999.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039684)	promoter-TSS (NM_001039684)	56.0	NM_001039684	380718.0	Mm.24404	NM_001039684	ENSMUSG00000034121	Mks1	AK190930|B8d3|avc6	Meckel syndrome, type 1	protein-coding	1.35368096970916	0.898944894101711	1.31544987750947	1.99125482100984	0.838732468530324	2.16069280831326	0.883118770109221	2.00320556132693	0.510220702570241	0.705199189335228	0.998431161219273
Merged-chr19-10523797-2	chr19	10523697	10523897	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025333, intron 1 of 3)	intron (NM_025333, intron 1 of 3)	1412.0	NM_025333	66072.0	Mm.180063	NM_025333	ENSMUSG00000024668	Sdhaf2	0610038F07Rik|AA407634|AW049997	succinate dehydrogenase complex assembly factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-106839058-4	chr4	106838969	106839169	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-34062.0	NM_001347159	329910.0	Mm.222956	NM_025590	ENSMUSG00000034853	Acot11	1110020M10Rik|2010309H15Rik|AW060409|BFIT|BFIT1|Thea|Them1|mKIAA0707	acyl-CoA thioesterase 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-104491570-1	chr2	104491470	104491670	+	570.0	f0_balb.idr	intron (NM_010434, intron 1 of 15)	intron (NM_010434, intron 1 of 15)	2919.0	NM_010434	15259.0	Mm.257925	NM_010434	ENSMUSG00000027177	Hipk3	DYRK6|FIST3|PKY|mir-1902	homeodomain interacting protein kinase 3	protein-coding	-0.570176278079204	-0.828172689240768	-0.832418311687752	-0.201448708538692	-0.838185769364555	-0.825368027620195	-0.831734101493321	-0.834392483589968	-3.09671510812096	0.295048739405684	1
Merged-chr6-145274771-1	chr6	145274671	145274871	+	547.0	f1_c57bl6.idr	Intergenic	Intergenic	24219.0	NR_045598	100039495.0	Mm.121014	NR_045598	ENSMUSG00000086013	Gm15706	-	predicted gene 15706	ncRNA	0.951184929643813	0.398204182914789	0.390577828251595	0.82166368433248	1.1223966863752	0.399919177686016	0.392262501018337	0.827847040542308	0.335542657214106	0.854969391216678	1
Merged-chr4-109439289-3	chr4	109439178	109439378	+	793.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145948, intron 13 of 17)	ORR1D2|LTR|ERVL-MaLR	23631.0	NM_001145948	230603.0	Mm.33091	NM_153392	ENSMUSG00000028555	Ttc39a	4922503N01Rik	tetratricopeptide repeat domain 39A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-17905766-3	chr14	17905682	17905882	+	999.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113417, intron 2 of 9)	intron (NM_001113417, intron 2 of 9)	-75862.0	NM_009380	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101246434-4	chr15	101246330	101246530	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-20416.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	8.2383221758217	8.29923294141989	8.60475127605469	8.37172585476853	8.51244114605828	8.41260476025539	8.52007577985625	8.28990125483192	0.0545055194179034	0.652113580778266	0.986434615290108
Merged-chr14-47649733-4	chr14	47649640	47649840	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347528, intron 1 of 37)	CpG	429.0	NM_001347524	16709.0	Mm.3110	NM_008477	ENSMUSG00000021843	Ktn1	-	kinectin 1	protein-coding	3.17216483522538	4.00225124172031	4.04413924543927	2.5456385601982	2.42122485711581	3.59105457248186	3.90379328832325	3.52346542225068	-0.172611178532931	0.783477407057807	0.998431161219273
Merged-chr19-6277826-4	chr19	6277730	6277930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010119, intron 1 of 4)	intron (NM_010119, intron 1 of 4)	934.0	NM_010119	13660.0	Mm.30169	NM_010119	ENSMUSG00000024772	Ehd1	AA409636|Past1|RME-1	EH-domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-109781542-4	chr7	109781394	109781594	+	828.775024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020610)	promoter-TSS (NM_020610)	51.0	NM_020610	78593.0	Mm.275374	NM_020610	ENSMUSG00000034825	Nrip3	A330103B05Rik|D7H11orf14|ICRFP703B1614Q5.2	nuclear receptor interacting protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-22697653-2	chr8	22697553	22697753	+	581.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159774, intron 2 of 21)	intron (NM_001159774, intron 2 of 21)	8930.0	NM_010546	16150.0	Mm.277886	NM_010546	ENSMUSG00000031537	Ikbkb	AI132552|IKK-2|IKK-beta|IKK2|IKK[b]|IKKbeta	inhibitor of kappaB kinase beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-118419540-4	chr6	118419527	118419727	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_194339)	promoter-TSS (NM_194339)	-210.0	NM_194339	213895.0	Mm.25269	NM_194339	ENSMUSG00000030138	Bms1	AA408648|AU020092|AU043373|BB007109|BC030906|Bms1l|mKIAA0187	BMS1, ribosome biogenesis factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-80384784-2	chr11	80384684	80384884	+	671.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045038, intron 1 of 16)	intron (NR_045038, intron 1 of 16)	1505.0	NM_001130171	22680.0	Mm.401332	NM_011751	ENSMUSG00000017421	Zfp207	8430401D15Rik|BuGZ|Zep|Znf207	zinc finger protein 207	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-128058020-3	chr8	128057916	128058116	+	591.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	220209.0	NR_105822	102465212.0		NR_105822	ENSMUSG00000099326	Mir21c	Gm28013|mmu-mir-21c	microRNA 21c	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-154913743-2	chr4	154913643	154913843	+	712.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14334.0	NM_178931	230979.0	Mm.215147	NM_178931	ENSMUSG00000042333	Tnfrsf14	Atar|HveA|Hvem|Tnfrs14	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-77803972-2	chr15	77803872	77804072	+	549.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_022410, intron 3 of 40)	intron (NM_022410, intron 3 of 40)	38203.0	NM_022410	17886.0	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-32430585-2	chr5	32430485	32430685	+	754.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28385.0	NM_172707	19046.0	Mm.241931	NM_172707	ENSMUSG00000014956	Ppp1cb	1200010B19	protein phosphatase 1, catalytic subunit, beta isoform	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94961481-4	chr10	94961370	94961570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1L|LTR|ERVL-MaLR	-16892.0	NM_018797	54712.0	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-136139548-3	chr1	136139452	136139652	+	858.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039472, intron 1 of 34)	RMER10B|LTR|ERVL	8162.0	NR_153829	16565.0	Mm.276135	NM_019962	ENSMUSG00000041642	Kif21b	2610511N21Rik|mKIAA0449	kinesin family member 21B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-23747293-5	chr13	23747221	23747421	+	749.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_175664)	TTS (NM_175664)	587.0	NM_175664	319178.0	Mm.390567	NM_175664	ENSMUSG00000075031	Hist1h2bb	H2b-143	histone cluster 1, H2bb	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-193632756-2	chr1	193632654	193632854	+	665.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	-125224.0	NR_029592	387201.0		NR_029592	ENSMUSG00000065533	Mir205	Mirn205|mir-205|mmu-mir-205	microRNA 205	ncRNA	-2.18308165884198	-2.15547475440471	-2.16382331017202	-2.1706810624505	-2.18114370519566	-2.15366558754311	-2.03057248461154	-2.16945352807143	0.759018020146679	0.829933115115583	1
Merged-chr17-21567001-5	chr17	21566892	21567092	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357347)	promoter-TSS (NM_001357347)	14.0	NM_001357347	381066.0	Mm.441097	NM_001002008	ENSMUSG00000067931	Zfp948	-	zinc finger protein 948	protein-coding	1.78869091720422	1.51005814136377	1.64500983035379	2.0916498739572	2.17071081318918	2.33061716695592	1.65536862315085	1.88577449767821	0.773226050015345	0.430382191912161	0.904223090525788
Merged-chr5-45498377-3	chr5	45498266	45498466	+	835.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024434, intron 4 of 12)	intron (NM_024434, intron 4 of 12)	4992.0	NM_024434	66988.0	Mm.286830	NM_024434	ENSMUSG00000039682	Lap3	2410015L10Rik|AA410100|LAP-3|Lap|Lapep|Pep-7|Pep-S|Pep7|Peps	leucine aminopeptidase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-50112957-4	chr6	50112870	50113070	+	976.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361248, intron 1 of 13)	intron (NM_001361248, intron 1 of 13)	2110.0	NM_001361248	56524.0	Mm.41288	NM_008016	ENSMUSG00000038388	Mpp6	P55t|Pals2	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-45090327-6	chr16	45090227	45090427	+	883.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3684.0	NM_026439	67896.0	Mm.181074	NM_026439	ENSMUSG00000022665	Ccdc80	2610001E17Rik|DRO1|Ssg1|Urb	coiled-coil domain containing 80	protein-coding	2.93018364746984	3.7332381122006	2.32769568103699	2.84237235881828	2.80088732096481	1.51807963905509	2.85187787866138	1.91903296443135	-1.22286451928648	0.133729375965032	0.571397810836344
Merged-chr11-6290935-2	chr11	6290835	6291035	+	818.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252282)	promoter-TSS (NM_001252282)	-662.0	NM_010956	18293.0	Mm.276348	NM_010956	ENSMUSG00000020456	Ogdh	2210403E04Rik|2210412K19Rik|AA409584|d1401|mKIAA4192	oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-25036529-4	chr16	25036436	25036636	+	751.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23103.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80184486-6	chr7	80184397	80184597	+	929.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	-2344.0	NM_013659	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	0.999260869225532	0.559137694382261	0.996113563020356	0.842727357486932	0.803781498668902	0.560848763341767	0.877546550003537	1.07452688623093	-0.10343865456082	0.946359419707639	1
Merged-chr1-134415392-4	chr1	134415304	134415504	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001306069)	promoter-TSS (NM_001306069)	26.0	NM_028320	72674.0	Mm.259976	NM_028320	ENSMUSG00000026457	Adipor1	2810031L11Rik|ACDCR1|CGI-45|Paqr1	adiponectin receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-76594257-7	chr12	76594129	76594329	+	880.619019	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013675, intron 32 of 35)	intron (NM_013675, intron 32 of 35)	-46304.0	NR_046044	100504549.0	Mm.440349	NR_046044	ENSMUSG00000112388	AI463170	-	expressed sequence AI463170	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-69792838-4	chr8	69792768	69792968	+	770.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133224, intron 1 of 25)	intron (NM_133224, intron 1 of 25)	1705.0	NM_133224	170759.0	Mm.186066	NM_133224	ENSMUSG00000031862	Atp13a1	Atp13a|Cgi152|catp	ATPase type 13A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191963501-3	chr1	191963395	191963595	+	945.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13875.0	NM_001177900	74023.0	Mm.274393	NM_023727	ENSMUSG00000049353	Rd3	3322402L07Rik|rd-3|rd3	retinal degeneration 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-11771872-2	chr19	11771774	11771974	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025606, intron 2 of 3)	intron (NM_025606, intron 2 of 3)	1459.0	NM_025606	94063.0	Mm.203928	NM_025606	ENSMUSG00000024683	Mrpl16	2310039D06Rik	mitochondrial ribosomal protein L16	protein-coding	0.589980091174097	0.130538225237387	0.124437076535935	0.119722427378015	0.500719718585966	0.869646307992642	0.308650876727028	0.120546561532031	1.52177740476879	0.453011465316925	1
Merged-chr1-131089916-4	chr1	131089808	131090008	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008551, intron 1 of 9)	intron (NM_008551, intron 1 of 9)	7935.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	2.99642600170693	2.63363531121455	2.54118878688094	2.16100064915188	2.35332085905641	3.72015087061571	3.48214787025372	2.17281038918164	0.869683558742737	0.248343323773243	0.74758343357745
Merged-chr9-42124018-2	chr9	42123918	42124118	+	761.916626	f1_balb.idr|f1_c57bl6.idr	exon (NM_011436, exon 1 of 48)	exon (NM_011436, exon 1 of 48)	279.0	NM_011436	20660.0	Mm.121920	NM_011436	ENSMUSG00000049313	Sorl1	2900010L19Rik|AI596264|AW261561|LR11|SorLA|gp250|mSorLA	sortilin-related receptor, LDLR class A repeats-containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-42093356-1	chr10	42093256	42093456	+	554.0	f0_balb.idr	Intergenic	Intergenic	-74974.0	NM_001034858	213402.0	Mm.211320	NM_001034858	ENSMUSG00000071324	Armc2	2610018I05Rik	armadillo repeat containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-98856261-2	chr13	98856161	98856361	+	998.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178716, intron 15 of 23)	Lx8|LINE|L1	34781.0	NM_001048267	238799.0	Mm.173286	NM_178716	ENSMUSG00000009470	Tnpo1	AU021749|D13Ertd688e|IPO2|Kpnb2|MIP|MIP1|TRN	transportin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-31083868-2	chr19	31083768	31083968	+	717.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_031249, exon 1 of 1)	exon (NM_031249, exon 1 of 1)	1027.0	NM_031249	83410.0	Mm.22031	NM_031249	ENSMUSG00000053536	Cstf2t	64kDa|C77975|tCstF-64|tauCstF-64	cleavage stimulation factor, 3' pre-RNA subunit 2, tau	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-62875981-1	chr14	62875881	62876081	+	602.0	f1_c57bl6.idr	intron (NM_175546, intron 1 of 11)	intron (NM_175546, intron 1 of 11)	10439.0	NR_105860	102465311.0		NR_105860	ENSMUSG00000098858	Mir6541	Gm27311|mmu-mir-6541	microRNA 6541	ncRNA	1.96627809220572	1.25984622063184	0.985761847583875	1.8973236480878	1.89940365362349	1.26817764796966	2.33484025954267	0.971838704366029	0.403405395904448	0.745758898955493	0.998431161219273
Merged-chr11-118460928-2	chr11	118460828	118461028	+	809.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5933.0	NR_045902	100126224.0	Mm.441989	NR_045902	ENSMUSG00000086514	Gm11747	-	predicted gene 11747	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-92322699-1	chr13	92322599	92322799	+	657.0	f1_c57bl6.idr	intron (NM_001311120, intron 8 of 23)	MTD|LTR|ERVL-MaLR	-32084.0	NM_010049	13361.0	Mm.23695	NM_010049	ENSMUSG00000021707	Dhfr	8430436I03Rik|AA607882|AI662710|AW555094	dihydrofolate reductase	protein-coding	0.774278755727464	1.91992153492987	0.821264058521142	1.88071647568042	0.77881324304772	2.14622800730056	0.826088280385099	1.89241225705634	0.264163152240211	0.856345177796891	0.998431161219273
Merged-chr8-126511375-2	chr8	126511275	126511475	+	552.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36310.0	NM_001159907	212728.0	Mm.482479	NM_001159907	ENSMUSG00000090290	Tarbp1	Gm17296|Gm179	TAR RNA binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-86653702-3	chr11	86653641	86653841	+	819.714294	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356531, intron 5 of 11)	intron (NM_001356531, intron 5 of 11)	17534.0	NM_001356531	75909.0	Mm.390398	NM_029478	ENSMUSG00000018171	Vmp1	3110098I04Rik|4930579A11Rik|AI787464|Tango5|Tmem49|mir-21a|ni-2	vacuole membrane protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-105651340-4	chr7	105651233	105651433	+	977.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153393, intron 4 of 4)	intron (NR_153393, intron 4 of 4)	10888.0	NM_001360054	14356.0	Mm.220330	NM_019502	ENSMUSG00000089847	Timm10b	Fxc1|Tim10b|Tim9b	translocase of inner mitochondrial membrane 10B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21525358-4	chr9	21525257	21525457	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_206536)	promoter-TSS (NM_206536)	-820.0	NM_001198794	382062.0	Mm.325205	NM_206536	ENSMUSG00000057191	AB124611	Gm1706	cDNA sequence AB124611	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-180273011-3	chr2	180272892	180273092	+	975.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145851, intron 1 of 9)	intron (NM_145851, intron 1 of 9)	473.0	NM_145851	252966.0	Mm.386884	NM_145851	ENSMUSG00000038990	Cables2	ik3-2	CDK5 and Abl enzyme substrate 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132532814-4	chr4	132532771	132532971	+	799.7559809999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007512, intron 3 of 3)	intron (NM_007512, intron 3 of 3)	2543.0	NM_007512	11983.0	Mm.2171	NM_007512	ENSMUSG00000054428	Atpif1	Atpi|IF(1)|If1	ATPase inhibitory factor 1	protein-coding	1.34175296787197	0.574118987926596	0.563444264521455	0.742405842436951	0.978102032958278	0.978205241485219	0.565810371360155	1.53052648966987	0.913872159474144	0.56740612217602	0.962562732139494
Merged-chr2-164035523-2	chr2	164035423	164035623	+	584.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114079, intron 6 of 13)	intron (NM_001114079, intron 6 of 13)	10299.0	NM_001114079	381404.0	Mm.82301	NM_001114079	ENSMUSG00000054582	Pabpc1l	1810053B01Rik|Epab	poly(A) binding protein, cytoplasmic 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-89981162-4	chr7	89981073	89981273	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021876)	promoter-TSS (NM_021876)	-197.0	NM_021876	13626.0	Mm.380914	NM_021876	ENSMUSG00000030619	Eed	l(7)5Rn|l7Rn5|lusk	embryonic ectoderm development	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-64191727-4	chr1	64191635	64191835	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70346.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-56720094-3	chr18	56719987	56720187	+	852.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010721, intron 1 of 10)	intron (NM_010721, intron 1 of 10)	12274.0	NM_010721	16906.0	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150622937-2	chr4	150622837	150623037	+	707.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001085492)	TTS (NM_001085492)	29237.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	-0.446325955288988	-0.805856900465229	-0.808857063420984	-0.286002941185794	-0.814397493751201	-0.803092924973584	-0.808198674337053	-0.810755415922132	-3.06173579201342	0.302422500462055	1
Merged-chr9-46153621-2	chr9	46153521	46153721	+	653.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_027498, intron 3 of 24)	intron (NM_027498, intron 3 of 24)	-75009.0	NM_009692	11806.0	Mm.26743	NM_009692	ENSMUSG00000032083	Apoa1	Alp-1|Apoa-1|Brp-14|Ltw-1|Lvtw-1|Sep-1|Sep-2|Sep2|apo-AI|apoA-I	apolipoprotein A-I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117280588-4	chr8	117280496	117280696	+	999.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	23577.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-98866207-2	chr15	98866107	98866307	+	638.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001033276, exon 4 of 55)	exon (NM_001033276, exon 4 of 55)	4998.0	NM_001033276	381022.0	Mm.264889	NM_001033276	ENSMUSG00000048154	Kmt2d	ALR|BC032281|BC058659|C430014K11Rik|KMT2B|Mll2|Mll4	lysine (K)-specific methyltransferase 2D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-172521042-4	chr1	172520971	172521171	+	989.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027972)	promoter-TSS (NM_027972)	-59.0	NM_027972	71870.0	Mm.78373	NM_027972	ENSMUSG00000026546	Cfap45	1700028D05Rik|Ccdc19|Nesg1	cilia and flagella associated protein 45	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3574809-2	chr19	3574709	3574909	+	991.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360430, intron 1 of 22)	intron (NM_001360430, intron 1 of 22)	940.0	NM_001360430	52036.0	Mm.284686	NM_028999	ENSMUSG00000024908	Ppp6r3	4930528G08Rik|9130026N02Rik|D19Bwg1430e|D19Ertd703e|Pp6r3|Ppcs3|Pptcs3|Sapl|Saps3|mKIAA1558	protein phosphatase 6, regulatory subunit 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-10415425-2	chr10	10415325	10415525	+	701.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001127353, intron 11 of 36)	L1Md_F2|LINE|L1	56889.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72097507-4	chr6	72097422	72097622	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011375)	promoter-TSS (NM_011375)	-86.0	NM_001035228	20454.0	Mm.38248	NM_011375	ENSMUSG00000056091	St3gal5	3S-T|Siat9|[a]2	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-76256359-2	chr12	76256259	76256459	+	687.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_138745, intron 1 of 27)	intron (NM_138745, intron 1 of 27)	1127.0	NM_138745	108156.0	Mm.29584	NM_138745	ENSMUSG00000021048	Mthfd1	Dcs|E430024A07Rik|Mthfd	methylenetetrahydrofolate dehydrogenase (NADP+ dependent), methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-18808435-5	chr13	18808424	18808624	+	966.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172120, intron 7 of 28)	intron (NM_172120, intron 7 of 28)	91232.0	NM_172120	218035.0	Mm.27389	NM_172120	ENSMUSG00000041236	Vps41	AI317346|Vam2|mVam2	VPS41 HOPS complex subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140323695-2	chr5	140323595	140323795	+	891.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356585, intron 1 of 3)	MLTR14|LTR|ERV1	2073.0	NM_001356585	17766.0	Mm.118846	NM_008637	ENSMUSG00000036639	Nudt1	Mth1	nudix (nucleoside diphosphate linked moiety X)-type motif 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-99289324-4	chr5	99289232	99289432	+	922.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	-36405.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-61309389-4	chr3	61309286	61309486	+	896.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55121.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-121263674-3	chr10	121263579	121263779	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_029057)	TTS (NM_029057)	47717.0	NM_029057	74694.0	Mm.233833	NM_029057	ENSMUSG00000052302	Tbc1d30	4930505D03Rik|9530013E20Rik	TBC1 domain family, member 30	protein-coding	1.65808447367393	1.15656045477748	0.905633704808102	0.89267765896935	2.04683593926994	1.66719968862078	1.13074259463654	1.76875490204137	1.75283835626525	0.175951315628906	0.645775639984829
Merged-chr12-17687375-2	chr12	17687275	17687475	+	841.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-3434.0	NM_001361645	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-71821271-2	chr16	71821171	71821371	+	701.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	413056.0	NR_131116	319533.0	Mm.373754	NR_131115		8030451O07Rik	-	RIKEN cDNA 8030451O07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-89902382-4	chr1	89902293	89902493	+	987.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28783.0	NM_010262	14472.0	Mm.204730	NM_010262	ENSMUSG00000034486	Gbx2	D130058E05Rik|Gbx-2|MMoxA|Stra7	gastrulation brain homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-55760266-2	chr16	55760166	55760366	+	838.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	61872.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-102140719-3	chr11	102140613	102140813	+	671.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4800.0	NM_145829	217214.0	Mm.31686	NM_145829	ENSMUSG00000048217	Nags	1700120E20Rik|argA	N-acetylglutamate synthase	protein-coding	1.61850902208422	2.06143083612241	1.15789992898941	2.08825611691258	0.887929407366846	1.20189772526147	0.930173076918609	1.83323658558191	-1.63207475668062	0.198683867075775	0.682127729065762
Merged-chr11-98889372-3	chr11	98889262	98889462	+	908.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197940, intron 2 of 7)	MTB_Mm|LTR|ERVL-MaLR	-18527.0	NM_001025779	23834.0	Mm.20912	NM_011799	ENSMUSG00000017499	Cdc6	CDC18L	cell division cycle 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-16439174-2	chr9	16439074	16439274	+	712.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60943.0	NM_001080814	270120.0	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT atypical cadherin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26645552-2	chr17	26645452	26645652	+	633.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026170, intron 9 of 9)	intron (NM_026170, intron 9 of 9)	-30844.0	NM_025272	11974.0	Mm.22602	NM_025272	ENSMUSG00000015575	Atp6v0e	Atp6k|Atp6v0e1|M9.2	ATPase, H+ transporting, lysosomal V0 subunit E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-77708579-4	chr18	77708483	77708683	+	846.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178670, intron 1 of 4)	intron (NM_178670, intron 1 of 4)	5427.0	NM_178670	212163.0	Mm.23293	NM_178670	ENSMUSG00000047466	8030462N17Rik	Akd2|Ark2N	RIKEN cDNA 8030462N17 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-35408041-3	chr8	35407917	35408117	+	768.56665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32276.0	NM_177741	244416.0	Mm.247126	NM_177741	ENSMUSG00000046794	Ppp1r3b	6430576E21|AW821953|GL|PTG	protein phosphatase 1, regulatory (inhibitor) subunit 3B	protein-coding	3.44217918593959	2.63084660674946	3.01582262964469	3.16551960760072	4.43028003530868	5.43907600331553	3.78346649078006	5.07769825540383	2.31339285778246	7.63312550450883e-06	0.000367749902947263
Merged-chr15-89131564-4	chr15	89131458	89131658	+	817.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013871, intron 11 of 11)	intron (NM_013871, intron 11 of 11)	-2858.0	NR_028449	170787.0	Mm.203954	NM_199198	ENSMUSG00000062906	Hdac10	AW548891|Hd10	histone deacetylase 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35065044-4	chr17	35064926	35065126	+	983.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_001462, exon 1 of 1)	non-coding (NR_001462, exon 1 of 1)	589.0	NR_001462	114763.0	Mm.491064	NR_001462		G6bos	G6b|NG31	G6b opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-81371278-4	chr13	81371162	81371362	+	921.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 83 of 89)	Lx6|LINE|L1	261882.0	NM_054053	110789.0	Mm.288694	NM_054053	ENSMUSG00000069170	Adgrv1	Frings|Gpr98|Mass1|Mgr1|VLGR1	adhesion G protein-coupled receptor V1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85532742-4	chr12	85532661	85532861	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58871.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-84790537-2	chr10	84790437	84790637	+	820.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001024918, intron 2 of 17)	intron (NM_001024918, intron 2 of 17)	34489.0	NM_001024918	71137.0	Mm.79070	NM_027689	ENSMUSG00000020037	Rfx4	4933412G19Rik|NYD-sp10	regulatory factor X, 4 (influences HLA class II expression)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-99122933-4	chr9	99122823	99123023	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029094, intron 1 of 23)	intron (NM_029094, intron 1 of 23)	17288.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-51871171-2	chr15	51871071	51871271	+	758.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-5710.0	NM_080635	68135.0	Mm.289800	NM_080635	ENSMUSG00000022312	Eif3h	1110008A16Rik|40kD|9430017H16Rik|EIF3-P40|EIF3-gamma|Eif3s3	eukaryotic translation initiation factor 3, subunit H	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-27592072-3	chr7	27591988	27592188	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110208, intron 1 of 13)	CpG	536.0	NM_001110208	11652.0	Mm.177194	NM_007434	ENSMUSG00000004056	Akt2	2410016A19Rik|AW554154|PKB|PKBbeta	thymoma viral proto-oncogene 2	protein-coding	1.4878123974713	0.946808569264405	1.15088126333776	1.57374480726777	1.79332386746913	1.55570694050263	2.13446536456512	0.917831807784124	1.21574854564693	0.334771219123752	0.835388696663455
Merged-chr6-134073135-4	chr6	134073021	134073221	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 2 of 8)	intron (NM_001303102, intron 2 of 8)	37421.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-23008380-4	chr11	23008260	23008460	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-5027.0	NM_028672	73873.0	Mm.252406	NM_028672	ENSMUSG00000049811	Fam161a	4930430E16Rik	family with sequence similarity 161, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167679513-2	chr2	167679413	167679613	+	606.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-9402.0	NM_009883	12608.0	Mm.439656	NM_009883	ENSMUSG00000056501	Cebpb	C/EBPbeta|CRP2|IL-6DBP|LAP|LIP|NF-IL6|NF-M|Nfil6	CCAAT/enhancer binding protein (C/EBP), beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26602435-2	chr17	26602335	26602535	+	569.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026170, intron 1 of 9)	intron (NM_026170, intron 1 of 9)	40923.0	NM_026170	67458.0	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-146816330-2	chr5	146816230	146816430	+	559.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16560.0	NM_019647	19933.0	Mm.316592	NM_019647	ENSMUSG00000041453	Rpl21	8430440E03Rik|L21	ribosomal protein L21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-39836372-2	chr13	39836272	39836472	+	896.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	451639.0	NM_172143	218165.0	Mm.364096	NM_172143	ENSMUSG00000047094	Ofcc1	opo	orofacial cleft 1 candidate 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-55149887-4	chr9	55149793	55149993	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346658)	promoter-TSS (NM_001346658)	-190.0	NM_001346658	109161.0	Mm.207894	NM_180600	ENSMUSG00000032307	Ube2q2	3010021M21Rik	ubiquitin-conjugating enzyme E2Q family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128420142-2	chr2	128420042	128420242	+	794.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_028591, intron 1 of 1)	MER44B|DNA|TcMar-Tigger	9209.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102721399-4	chr12	102721306	102721506	+	950.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16537.0	NM_172584	217837.0	Mm.482192	NM_172584	ENSMUSG00000057963	Itpk1	BC031182	inositol 1,3,4-triphosphate 5/6 kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70107650-2	chr8	70107550	70107750	+	603.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_007789, exon 8 of 15)	exon (NM_007789, exon 8 of 15)	-5064.0	NR_106033	102465646.0		NR_106033	ENSMUSG00000099042	Mir7066	Gm27290|mmu-mir-7066	microRNA 7066	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-105684544-4	chr12	105684447	105684647	+	991.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178613)	promoter-TSS (NM_178613)	694.0	NM_029654	76559.0	Mm.114362	NM_029654	ENSMUSG00000041341	Atg2b	2410024A21Rik|AI047755|AI503411|AW558123|C030004M05Rik|C630028L02Rik|mKIAA4067	autophagy related 2B	protein-coding	2.34605344500141	1.37984807925385	1.05532266995943	1.68752414292526	1.60487387780125	1.09525949139984	3.1667544051999	2.32435672171099	1.32148952416049	0.241216979235035	0.737728541910355
Merged-chr5-123151279-4	chr5	123151156	123151356	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040398, intron 6 of 16)	MIR|SINE|MIR	9063.0	NM_001040398	208043.0	Mm.250391	NM_177581	ENSMUSG00000038384	Setd1b	AA516740|BC035291|KMT2G|mKIAA1076	SET domain containing 1B	protein-coding	3.36776575380346	4.20235413155527	3.27934685550028	3.28527317911574	3.79734510375321	3.72398433785897	4.54132692261656	4.14425909879754	0.717530232912326	0.154357433695459	0.60973896712405
Merged-chr9-21410084-4	chr9	21409989	21410189	+	974.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045742, intron 1 of 4)	intron (NR_045742, intron 1 of 4)	1631.0	NR_045742	330902.0	Mm.437044	NR_045742	ENSMUSG00000097665	Gm16853	4930565O14	predicted gene, 16853	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-13790310-2	chr18	13790210	13790410	+	675.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360804, intron 5 of 7)	intron (NM_001360804, intron 5 of 7)	182423.0	NM_001360804	225207.0	Mm.40325	NM_145492	ENSMUSG00000024420	Zfp521	B930086A16Rik|Evi3|Znf521	zinc finger protein 521	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-42942530-2	chr15	42942430	42942630	+	546.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2B|LINE|L1	228288.0	NM_001357957	239405.0	Mm.193274	NM_172815	ENSMUSG00000051920	Rspo2	2610028F08Rik|AA673245|D430027K22|ftls	R-spondin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-130897828-2	chr4	130897728	130897928	+	629.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15506.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-104572317-2	chr5	104572203	104572403	+	703.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346672, intron 1 of 3)	intron (NM_001346672, intron 1 of 3)	631.0	NM_001346671	69623.0	Mm.69919	NM_027142		Zfp33b	2310012P17Rik	zinc finger protein 33B	protein-coding	1.69235312589747	0.767634321478175	0.751672949411849	1.80471555071093	1.33354774446237	0.771178548080248	0.755227774269926	1.81611519641875	-0.338575701385528	0.824613067197982	0.998431161219273
Merged-chr2-31769641-8	chr2	31769580	31769780	+	994.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001283045, intron 1 of 10)	intron (NM_001283045, intron 1 of 10)	9507.0	NM_001283045	11350.0	Mm.1318	NM_009594	ENSMUSG00000026842	Abl1	AI325092|Abl|E430008G22Rik|c-Abl	c-abl oncogene 1, non-receptor tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-83949141-3	chr12	83949038	83949238	+	730.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR12B|LTR|ERVK	-1470.0	NM_023633	71952.0	Mm.251483	NM_023633	ENSMUSG00000046791	Riox1	2410016O06Rik|MAPJD|NO66	ribosomal oxygenase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-109736914-3	chr13	109736811	109737011	+	996.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011056, intron 3 of 16)	intron (NM_011056, intron 3 of 16)	-166898.0	NR_035442	100316683.0		NR_035442	ENSMUSG00000084651	Mir1904	Mirn1904|mmu-mir-1904	microRNA 1904	ncRNA	1.93036482551309	2.58178688671234	3.10999851482999	4.0044898598893	3.20703148837438	2.21392796398581	3.31667185866504	3.68627841089305	0.109524320520603	0.882556304218092	0.998431161219273
Merged-chr11-94475078-2	chr11	94474978	94475178	+	559.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001112813)	promoter-TSS (NM_001112813)	-880.0	NM_001112813	12291.0	Mm.29585	NM_009783	ENSMUSG00000020866	Cacna1g	Cav3.1d|[a]1G|a1G|alpha-1G|mKIAA1123	calcium channel, voltage-dependent, T type, alpha 1G subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-46304941-4	chr4	46304836	46305036	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-39258.0	NM_183298	110805.0	Mm.354634	NM_183298	ENSMUSG00000070990	Foxe1	Titf2	forkhead box E1	protein-coding	3.16424509609078	3.11297031386111	4.18523310887691	3.66147719816373	4.25577036768369	4.05681783667415	3.71948831250005	3.04935842772725	0.350330251218835	0.522383179407114	0.947836760490745
Merged-chr1-51466613-2	chr1	51466513	51466713	+	763.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11786.0	NM_001310548	109019.0	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129617033-2	chr4	129616933	129617133	+	609.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_198026, exon 5 of 5)	exon (NM_198026, exon 5 of 5)	2060.0	NM_198026	230767.0	Mm.441132	NM_198026	ENSMUSG00000040795	Iqcc	BC026978	IQ motif containing C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-105840030-4	chr3	105839933	105840133	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24466.0	NR_045845	433637.0	Mm.331285	NR_045845	ENSMUSG00000104835	Gm5547	EG433637	predicted gene 5547	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-102657419-4	chr4	102657344	102657544	+	997.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	67601.0	NM_001177981	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-93032154-4	chr16	93032037	93032237	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-206063.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-58907039-2	chr11	58906939	58907139	+	691.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR26_Mus|LTR|ERVK	-2814.0	NM_011758	22698.0	Mm.127646	NM_011758	ENSMUSG00000037001	Zfp39	CTfin33|Zfp-39	zinc finger protein 39	protein-coding	0.373236093985194	1.10139935299606	0.0772662275831983	0.0710081905865106	0.0620575697481645	0.793335293481938	0.0790441091052279	0.0721058813482831	-1.05278704247387	0.615962212831241	1
Merged-chr2-84840490-2	chr2	84840390	84840590	+	990.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001083809)	promoter-TSS (NM_001083809)	-136.0	NM_001083809	72401.0	Mm.22716	NM_024497	ENSMUSG00000027075	Slc43a1	2610016F07Rik|AA986141|Lat3|PB39|Pov1|R00504	solute carrier family 43, member 1	protein-coding	1.15182839652218	2.4163970655988	2.55588826120812	1.57863750910821	0.936453812701349	1.01961509066911	1.93062886051949	1.58761329765274	-1.69506983773635	0.154286102926676	0.609590997666604
Merged-chr5-92145165-3	chr5	92145075	92145275	+	609.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019490, intron 1 of 23)	intron (NM_019490, intron 1 of 23)	7237.0	NM_019490	56041.0	Mm.15868	NM_019490	ENSMUSG00000029407	Uso1	115kDa|TAP|Vdp	USO1 vesicle docking factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-128824354-3	chr4	128824281	128824481	+	619.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18269.0	NM_001081098	230761.0	Mm.22616	NM_001081098	ENSMUSG00000028799	Zfp362	-	zinc finger protein 362	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-87428051-5	chr11	87427938	87428138	+	880.2666630000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199293, intron 1 of 30)	PB1D7|SINE|Alu	447.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-144971572-1	chr7	144971472	144971672	+	915.0	f1_c57bl6.idr	Intergenic	Intergenic	-31647.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	0.830458004891412	0.470801155074313	0.462974349817076	0.890281340168313	0.726632560706487	0.97999929253601	1.1550886531276	0.45797934867638	0.984199375782916	0.55755441311725	1
Merged-chr9-90216560-4	chr9	90216472	90216672	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 9 of 12)	intron (NM_194334, intron 9 of 12)	53594.0	NM_001311115	108153.0	Mm.102141	NM_001003911	ENSMUSG00000032363	Adamts7	ADAM-TS7|ADAMTS7B	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-34176220-2	chr6	34176120	34176320	+	737.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_021435, intron 1 of 9)	intron (NM_021435, intron 1 of 9)	834.0	NM_021435	58246.0	Mm.245527	NM_021435	ENSMUSG00000018999	Slc35b4	4930474D06Rik|AB041549|AW494345	solute carrier family 35, member B4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-41228938-4	chr9	41228901	41229101	+	909.7666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22846.0	NR_040392	78500.0	Mm.275715	NR_040392	ENSMUSG00000100837	1700063D05Rik	-	RIKEN cDNA 1700063D05 gene	ncRNA	1.0804008947157	0.570069953621581	0.558983612610235	1.5297997538612	0.854998824533641	1.39083944374486	0.561442428794164	0.745081686248781	-0.344818703076892	0.828662731455595	0.998431161219273
Merged-chr17-34660611-2	chr17	34660517	34660717	+	573.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9918.0	NM_031176	81877.0	Mm.290527	NM_031176	ENSMUSG00000033327	Tnxb	Tn-mhc|Tnx	tenascin XB	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-58897743-3	chr1	58897658	58897858	+	838.361084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	75724.0	NM_172406	70827.0	Mm.222887	NM_172406	ENSMUSG00000026028	Trak2	2900022D04Rik|4733401O11Rik|AI480836|AW046271|Als2cr3|CALS-C|GRIF-1|GRIF1|OIP98|mKIAA0549	trafficking protein, kinesin binding 2	protein-coding	3.13078096194528	4.24811411860947	4.06608617648996	4.14574209136218	2.87709637358257	3.36129248390483	1.96432568988979	2.50496748276137	-1.85192721821753	0.0027234665147255	0.0423266207819644
Merged-chr17-55892039-4	chr17	55891920	55892120	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145490)	promoter-TSS (NM_145490)	-73.0	NM_001360136	224893.0	Mm.294853	NM_145490	ENSMUSG00000003198	Zfp959	-	zinc finger protein 959	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127264388-2	chr10	127264288	127264488	+	676.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1025.0	NM_001039000	16572.0	Mm.30355	NM_008447	ENSMUSG00000074657	Kif5a	D10Bwg0738e|Khc|Kif5|Kns|mKIAA4086	kinesin family member 5A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106491620-4	chr11	106491513	106491713	+	876.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3817.0	NM_023913	78943.0	Mm.340943	NM_023913	ENSMUSG00000020715	Ern1	9030414B18Rik|AI225830|C85377|Ire1a|Ire1alpha|Ire1p	endoplasmic reticulum (ER) to nucleus signalling 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-4195807-4	chr11	4195710	4195910	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134023, intron 1 of 8)	intron (NM_134023, intron 1 of 8)	8977.0	NM_134023	103724.0	Mm.28140	NM_134023	ENSMUSG00000034412	Tbc1d10a	AI447804|EPI64|Tbc1d10|mFLJ00288	TBC1 domain family, member 10a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-164770456-2	chr2	164770356	164770556	+	845.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_026785, intron 2 of 5)	intron (NM_026785, intron 2 of 5)	527.0	NM_026785	68612.0	Mm.89830	NM_026785	ENSMUSG00000001403	Ube2c	1110015A16Rik|D2Ertd695e	ubiquitin-conjugating enzyme E2C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-144447245-4	chr7	144447110	144447310	+	888.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357116, intron 10 of 15)	intron (NM_001357116, intron 10 of 15)	23725.0	NM_007803	13043.0	Mm.205601	NM_007803	ENSMUSG00000031078	Cttn	1110020L01Rik|Ems1	cortactin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-24660926-2	chr6	24660826	24661026	+	753.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028459, intron 1 of 10)	intron (NM_028459, intron 1 of 10)	4069.0	NM_001167745	73178.0	Mm.1574	NM_028459	ENSMUSG00000029684	Wasl	2900021I12Rik|3110031I02Rik|N-WASP	Wiskott-Aldrich syndrome-like (human)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-55494865-2	chr12	55494765	55494965	+	969.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-2218.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-98927930-2	chr15	98927830	98928030	+	846.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	6460.0	NM_011654	22143.0	Mm.392113	NM_011654	ENSMUSG00000023004	Tuba1b	Tuba2	tubulin, alpha 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-55804136-4	chr1	55804016	55804216	+	740.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-127125.0	NR_045837	329159.0	Mm.98697	NR_045837	ENSMUSG00000099950	9130227L01Rik	-	RIKEN cDNA 9130227L01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-110815645-4	chr5	110815527	110815727	+	945.7333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A2-int|LTR|ERVL-MaLR	-5546.0	NM_001347394	22241.0	Mm.271898	NM_009469	ENSMUSG00000029512	Ulk1	AU041434|Unc51.1|mKIAA0722	unc-51 like kinase 1	protein-coding	3.13585998030792	3.17347108107801	3.65645915061236	3.23007823435013	2.53409327308562	1.64361074065711	2.3039877633088	3.57597473063217	-1.00452051199439	0.172846082479554	0.640855159947368
Merged-chr7-55911052-2	chr7	55910954	55911154	+	629.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_011370, intron 22 of 30)	L1MEf|LINE|L1	51439.0	NM_001256133	93790.0	Mm.37249	NM_023647	ENSMUSG00000030452	Nipa2	2600017P10Rik|3830408P04Rik|AB041581	non imprinted in Prader-Willi/Angelman syndrome 2 homolog (human)	protein-coding	2.87425284927383	4.11865277670496	2.79162596204483	3.36802720603482	2.3114362387405	3.60808133108947	2.15047108121532	3.14431810558821	-0.754433557468237	0.281253076952087	0.78400185225177
Merged-chr6-114364866-4	chr6	114364751	114364951	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-33085.0	NM_001317125	15465.0	Mm.333327	NM_008285	ENSMUSG00000053004	Hrh1	Bphs|H1R|HH1R|Hir	histamine receptor H1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100626786-4	chr11	100626692	100626892	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028024, exon 4 of 4)	3' UTR (NM_028024, exon 4 of 4)	3837.0	NM_028024	71966.0	Mm.274734	NM_028024	ENSMUSG00000017837	Nkiras2	2410003M04Rik|4930527H08Rik|D630018G21Rik|KBRAS2	NFKB inhibitor interacting Ras-like protein 2	protein-coding	5.163985287755	4.94898569126699	4.88216234977343	4.94773544547885	4.95161914823413	5.49235617211958	5.14419140685747	4.0987845654392	0.0111254455739085	0.974967158660387	0.998431161219273
Merged-chr10-56792452-3	chr10	56792314	56792514	+	853.61908	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	360433.0	NR_152768	102640560.0	Mm.417249	NR_152768		Gm36595	-	predicted gene, 36595	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-67542722-4	chr18	67542634	67542834	+	882.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194355, intron 2 of 14)	intron (NM_194355, intron 2 of 14)	6439.0	NM_176832	68166.0	Mm.208723	NM_176832	ENSMUSG00000024533	Spire1	6030430B19Rik|AI415299|AU022898|AW550622|Spir-1	spire type actin nucleation factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99962066-3	chr7	99961969	99962169	+	782.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175388, intron 1 of 5)	(CA)n|Simple_repeat|Simple_repeat	18389.0	NM_175388	108937.0	Mm.323087	NM_175388	ENSMUSG00000058761	Rnf169	2900057K09Rik	ring finger protein 169	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-108854656-3	chr8	108854566	108854766	+	959.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007496, intron 3 of 9)	intron (NM_007496, intron 3 of 9)	-82194.0	NR_037295	100526511.0		NR_037295	ENSMUSG00000093241	Mir3108	mir-3108|mmu-mir-3108	microRNA 3108	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-77940456-2	chr18	77940356	77940556	+	562.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001195633, intron 1 of 43)	intron (NM_001195633, intron 1 of 43)	1989.0	NM_001195633	100502841.0	Mm.297782	NM_001195633	ENSMUSG00000039840	Epg5	4732475F16|5430411K18Rik|AI661957|AW456499|mKIAA1632	ectopic P-granules autophagy protein 5 homolog (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97463947-4	chr6	97463832	97464032	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	-4646.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	6.09168346871771	6.59087614402086	6.34172460940955	5.89148417922554	6.38649072848987	5.743681079795	6.83778403711508	6.10780315433347	0.0879670552990934	0.7331709385055	0.998431161219273
Merged-chr2-70978486-4	chr2	70978392	70978592	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145524, intron 5 of 9)	intron (NM_145524, intron 5 of 9)	39882.0	NM_001110512	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-104660021-3	chr9	104659940	104660140	+	891.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028719, intron 1 of 15)	intron (NM_028719, intron 1 of 15)	90557.0	NM_028719	74020.0	Mm.326240	NM_028719	ENSMUSG00000032564	Cpne4	3632411M23Rik|4933406O10Rik	copine IV	protein-coding	2.96263441092132	2.85243798819495	3.39266617621004	2.67284601716208	3.85474944499279	3.44461014169696	3.64533955262771	3.31578262282733	0.958961185785171	0.0961351350909152	0.481379836408276
Merged-chr7-4503969-4	chr7	4503865	4504065	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011618)	TTS (NM_011618)	-2285.0	NM_029834	232807.0	Mm.360391	NM_029834	ENSMUSG00000019254	Ppp1r12c	2410197A17Rik|AI839747|B430101M08|Mbs85	protein phosphatase 1, regulatory (inhibitor) subunit 12C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-54586379-4	chr1	54586205	54586405	+	946.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28621.0	NM_001163314	241062.0	Mm.103539	NM_175508	ENSMUSG00000073678	Pgap1	5033403E17Rik|9030223K07Rik|A530084K22|D230012E17Rik|oto	post-GPI attachment to proteins 1	protein-coding	-0.00154757468854186	0.485320470530921	0.00851321563518742	0.295049443815568	-0.000616427520840873	0.494543288350014	0.00959845231313597	0.299479634921591	0.0355360654630842	0.986652218974	1
Merged-chr7-143052088-2	chr7	143051988	143052188	+	898.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133655)	promoter-TSS (NM_133655)	-662.0	NM_133655	12520.0	Mm.806	NM_133655	ENSMUSG00000037706	Cd81	Tapa-1|Tapa1|Tspan28	CD81 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70541791-2	chr8	70541691	70541891	+	917.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_007924, intron 1 of 11)	intron (NM_007924, intron 1 of 11)	2116.0	NM_007924	13716.0	Mm.271973	NM_007924	ENSMUSG00000070002	Ell	Ell1|Men	elongation factor RNA polymerase II	protein-coding	1.48163073074852	1.67080463043294	0.953235958206653	1.44067070183267	1.92412749178943	0.972281410974628	1.62441845268807	1.44802714173706	0.461458905824202	0.712104406022394	0.998431161219273
Merged-chr4-132211102-2	chr4	132211002	132211202	+	716.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_145393, intron 2 of 4)	intron (NM_145393, intron 2 of 4)	1154.0	NM_145393	213541.0	Mm.23998	NM_145393	ENSMUSG00000040025	Ythdf2	9430020E02Rik|HGRG8|NY-REN-2	YTH domain family 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-8460265-3	chr10	8460184	8460384	+	999.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177387, intron 1 of 7)	intron (NM_177387, intron 1 of 7)	58541.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-25420783-4	chr5	25420671	25420871	+	785.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081383, intron 2 of 58)	intron (NM_001081383, intron 2 of 58)	78012.0	NM_001081383	231051.0	Mm.332268	NM_001081383	ENSMUSG00000038056	Kmt2c	E330008K23Rik|HALR|Mll3|mKIAA1506	lysine (K)-specific methyltransferase 2C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-37300262-2	chr6	37300162	37300362	+	596.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081206)	promoter-TSS (NM_001081206)	-286.0	NM_001347104	320127.0	Mm.119469	NM_001081206	ENSMUSG00000038665	Dgki	6430604M11Rik|C130010K08Rik	diacylglycerol kinase, iota	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-89577166-4	chr1	89577055	89577255	+	857.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037136, intron 1 of 16)	intron (NM_001037136, intron 1 of 16)	106737.0	NR_015540	74403.0	Mm.444291	NR_015540		4933400F21Rik	1700091C04Rik|4930565K10Rik	RIKEN cDNA 4933400F21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-43206889-3	chr5	43206753	43206953	+	761.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028417, intron 1 of 7)	intron (NR_028417, intron 1 of 7)	-26610.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-79914488-2	chr10	79914388	79914588	+	830.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177994, intron 1 of 7)	intron (NM_177994, intron 1 of 7)	2442.0	NM_177994	109284.0	Mm.300416	NM_177994	ENSMUSG00000035781	R3hdm4	AI503502|C030046I01Rik	R3H domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-58727194-4	chr1	58727079	58727279	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355056, intron 2 of 8)	intron (NM_001355056, intron 2 of 8)	-3373.0	NM_001293805	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-119451030-2	chr6	119450930	119451130	+	632.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009525, intron 1 of 4)	intron (NM_009525, intron 1 of 4)	-1644.0	NM_001271757	22419.0	Mm.321818	NM_009525	ENSMUSG00000030170	Wnt5b	AW545702|Wnt-5b	wingless-type MMTV integration site family, member 5B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-139454677-4	chr1	139454586	139454786	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009791)	promoter-TSS (NM_009791)	-87.0	NM_009791	12316.0	Mm.168523	NM_009791	ENSMUSG00000033952	Aspm	Calmbp1|D330028K02Rik|MCPH5|Sha1	abnormal spindle microtubule assembly	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-25291506-4	chr10	25291426	25291626	+	661.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018747, intron 1 of 7)	Tigger5|DNA|TcMar-Tigger	7637.0	NM_018747	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	-1.7024385483431	-1.81249224917775	-1.82134771053534	-1.82862185015837	-1.70038292649591	-1.81057323376012	-1.81934302819017	-1.82731978264371	0.0376840119903864	0.991491645451152	1
Merged-chr1-191443760-3	chr1	191443669	191443869	+	927.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151615, intron 3 of 5)	intron (NR_151615, intron 3 of 5)	21279.0	NR_151615	102634668.0		NR_151615		Gm32200	-	predicted gene, 32200	ncRNA	2.13711293362851	2.28111147568397	2.32032710973982	2.01366319953502	2.50195718937239	1.33575077647638	2.79138017541898	1.51628924051711	0.0323637696884301	0.973382471623044	0.998431161219273
Merged-chr4-156204037-4	chr4	156203928	156204128	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_030671, exon 1 of 1)	non-coding (NR_030671, exon 1 of 1)	744.0	NR_030671	100382.0	Mm.461024	NR_030671		AW011738	-	expressed sequence AW011738	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-76592471-1	chr12	76592371	76592571	+	574.0	f1_balb.idr	intron (NM_013675, intron 32 of 35)	intron (NM_013675, intron 32 of 35)	-44546.0	NR_046044	100504549.0	Mm.440349	NR_046044	ENSMUSG00000112388	AI463170	-	expressed sequence AI463170	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91855828-1	chr2	91855728	91855928	+	589.0	f1_balb.idr	intron (NM_001080754, intron 12 of 18)	intron (NM_001080754, intron 12 of 18)	-66361.0	NM_007699	12672.0	Mm.330405	NM_007699	ENSMUSG00000040495	Chrm4	Chrm-4|M4	cholinergic receptor, muscarinic 4	protein-coding	-0.22436349579851	-0.209921394104021	-0.21465287061211	-0.2183032619771	0.505985489800351	-0.0106145299933568	0.251707395020207	-0.217665544831318	3.81756489984406	0.10262449597515	1
Merged-chr10-121460649-3	chr10	121460552	121460752	+	905.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138956, intron 1 of 4)	intron (NM_138956, intron 1 of 4)	15598.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	2.48320982995296	3.70240321584	2.84289397271525	3.41509390028539	2.50563237641144	3.72847981081985	2.8661507484978	3.80281126217033	0.236810754903151	0.719353910321924	0.998431161219273
Merged-chr16-23563511-2	chr16	23563411	23563611	+	785.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42696.0	NM_001359083	17174.0	Mm.1213	NM_008555	ENSMUSG00000022887	Masp1	AW048060|CCPII|Crarf|Masp1/3	mannan-binding lectin serine peptidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-132828178-3	chr7	132828086	132828286	+	702.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347629, intron 3 of 3)	intron (NM_001347629, intron 3 of 3)	-14990.0	NM_212473	77938.0	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-122105574-3	chr10	122105458	122105658	+	760.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8456.0	NM_153059	216395.0	Mm.236764	NM_153059	ENSMUSG00000034620	Tmem5	6330415D21Rik	transmembrane protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-45405812-4	chr9	45405697	45405897	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007503)	promoter-TSS (NM_007503)	-280.0	NM_007503	11936.0	Mm.22742	NM_007503	ENSMUSG00000059412	Fxyd2	Atp1g1	FXYD domain-containing ion transport regulator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27585134-3	chr17	27585102	27585302	+	835.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291046, intron 2 of 4)	RLTR20A2B_MM|LTR|ERVK	-19475.0	NM_001002895	106672.0	Mm.61488	NM_001002895	ENSMUSG00000062753	AI413582	AI854251|Smim29	expressed sequence AI413582	protein-coding	2.91669101414495	3.09833497637401	1.84543386828337	2.68947470482225	2.10504283046726	1.18424415357806	1.14679960379073	1.1131026247323	-3.01181126307771	0.00502718581474807	0.0672671101174877
Merged-chr6-47911809-4	chr6	47911694	47911894	+	853.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR85c|LTR|Gypsy?	-8774.0	NM_145576	232784.0	Mm.196782	NM_145576	ENSMUSG00000052763	Zfp212	Znf212|mKIAA3011	Zinc finger protein 212	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-73730536-2	chr15	73730436	73730636	+	790.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166388, intron 1 of 5)	intron (NM_001166388, intron 1 of 5)	5606.0	NM_001166388	19245.0	Mm.390807	NM_008975	ENSMUSG00000059895	Ptp4a3	AV088979|Prl-3|pPtp4a3	protein tyrosine phosphatase 4a3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-107639806-3	chr11	107639696	107639896	+	822.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198298, intron 20 of 31)	Lx9|LINE|L1	2074.0	NR_105897	102465562.0		NR_105897	ENSMUSG00000098497	Mir6932	Gm27691|mmu-mir-6932	microRNA 6932	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140621644-2	chr5	140621544	140621744	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_175274, exon 14 of 14)	3' UTR (NM_175274, exon 14 of 14)	14303.0	NM_008494	16848.0	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131933672-4	chr1	131933563	131933763	+	788.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_175294, exon 7 of 7)	3' UTR (NM_175294, exon 7 of 7)	23205.0	NM_175294	98415.0	Mm.246869	NM_175294	ENSMUSG00000026434	Nucks1	2700010L10Rik|8430423A01Rik|AI647518|C78391|Nucks	nuclear casein kinase and cyclin-dependent kinase substrate 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-60761732-3	chr13	60761626	60761826	+	769.5888669999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001285917, exon 26 of 27)	exon (NM_001285917, exon 26 of 27)	24638.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124913441-4	chr6	124913351	124913551	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_026988)	TTS (NM_026988)	-1746.0	NM_008479	16768.0	Mm.4528	NM_008479	ENSMUSG00000030124	Lag3	CD223|LAG-3|Ly66	lymphocyte-activation gene 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-36928174-4	chr19	36928054	36928254	+	941.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080706, intron 1 of 37)	intron (NM_001080706, intron 1 of 37)	2075.0	NM_001080706	107182.0	Mm.295062	NM_001080706	ENSMUSG00000040565	Btaf1	AI414500|AI447930|E430027O22Rik|TAF170	B-TFIID TATA-box binding protein associated factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91838239-2	chr16	91838139	91838339	+	618.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110275, intron 17 of 28)	RSINE1|SINE|B4	93391.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-107783696-2	chr4	107783598	107783798	+	708.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18561.0	NR_033496	16975.0	Mm.442134	NM_053073	ENSMUSG00000028613	Lrp8	4932703M08Rik|AA921429|AI848122|ApoER2|Lr8b	low density lipoprotein receptor-related protein 8, apolipoprotein e receptor	protein-coding	0.814573397847582	1.09108294746362	1.37882750531058	0.709489505006838	0.508226956846636	0.541503603189757	1.39384406682323	0.521605051200449	-0.945196941205228	0.560155666668116	0.960321604678676
Merged-chr2-38646177-1	chr2	38646077	38646277	+	625.0	f0_balb.idr	Intergenic	Intergenic	-2271.0	NM_011187	19177.0	Mm.389251	NM_011187	ENSMUSG00000026750	Psmb7	AU020723|MC14	proteasome (prosome, macropain) subunit, beta type 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-85379372-2	chr15	85379272	85379472	+	700.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016843, intron 5 of 11)	intron (NM_016843, intron 5 of 11)	42991.0	NM_016843	54138.0	Mm.248906	NM_016843	ENSMUSG00000016541	Atxn10	AI325283|C77170|E46|Sca10|TEG-169|Tex169	ataxin 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-54077436-1	chr13	54077336	54077536	+	554.0	f1_balb.idr	intron (NM_027324, intron 1 of 10)	RSINE1|SINE|B4	5591.0	NM_027324	14057.0	Mm.134191	NM_027324	ENSMUSG00000021474	Sfxn1	2810002O05Rik|A930015P12Rik|f	sideroflexin 1	protein-coding	-0.475346413565445	-0.7134061209338	-0.716215844213131	-0.321820978158391	-0.4693982409331	-0.712770323923554	-0.715597666515307	-0.717995632351521	-1.25911859464901	0.65352083472096	1
Merged-chr10-4611546-3	chr10	4611445	4611645	+	830.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302532)	promoter-TSS (NM_001302532)	-444.0	NM_001302532	13982.0	Mm.9213	NM_007956	ENSMUSG00000019768	Esr1	ER|ER-alpha|ERa|ERalpha|ESR|Estr|Estra|Nr3a1	estrogen receptor 1 (alpha)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-33903837-4	chr1	33903727	33903927	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177235, intron 1 of 6)	intron (NM_177235, intron 1 of 6)	3794.0	NM_177235	320705.0	Mm.336619	NM_177235	ENSMUSG00000042182	Bend6	B230209C24Rik	BEN domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-11667725-4	chr11	11667558	11667758	+	866.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18267.0	NM_009578	22778.0	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-50763544-3	chr15	50763433	50763633	+	917.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310481, intron 4 of 5)	intron (NM_001310481, intron 4 of 5)	125516.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	0.818620468255905	1.4254311346539	1.5018019293615	0.837435056003034	1.66438125327316	1.43685488203208	1.62972996705609	1.0358978886627	1.06686095728391	0.426445826500306	0.902023751857747
Merged-chr11-67021162-4	chr11	67021069	67021269	+	833.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3985.0	NM_001291042	338369.0	Mm.128138	NM_177392	ENSMUSG00000050270	Tmem220	-	transmembrane protein 220	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-47739634-3	chr9	47739485	47739685	+	653.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	78623.0	NR_046048	100038460.0	Mm.447649	NR_046048		Gm10677	-	predicted gene 10677	ncRNA	1.07849450016053	1.2579266916515	0.554099817071463	0.545344407622038	1.19042443999313	0.567799315311798	1.52228972802812	0.546881543037078	0.568628312399901	0.735580718464815	0.998431161219273
Merged-chr14-21029944-2	chr14	21029844	21030044	+	560.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009502, intron 20 of 20)	intron (NM_009502, intron 20 of 20)	22498.0	NM_018829	55946.0	Mm.376269	NM_018829	ENSMUSG00000021824	Ap3m1	1200013D09Rik|C78982|R75378	adaptor-related protein complex 3, mu 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5728912-2	chr17	5728812	5729012	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 7 of 8)	intron (NM_146073, intron 7 of 8)	-69745.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-15625225-2	chr9	15625125	15625325	+	574.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_040746, intron 2 of 4)	intron (NR_040746, intron 2 of 4)	2708.0	NM_181816	234964.0	Mm.32237	NM_181816	ENSMUSG00000039977	Deup1	4933401K09Rik|Ccdc67	deuterosome assembly protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-9841335-2	chr4	9841235	9841435	+	874.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3037.0	NM_013526	242316.0	Mm.302555	NM_013526	ENSMUSG00000051279	Gdf6	BMP-13|BMP13|GDF16	growth differentiation factor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-100688162-2	chr15	100688062	100688262	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033612)	promoter-TSS (NM_033612)	-242.0	NM_033612	109901.0	Mm.2131	NM_033612	ENSMUSG00000023031	Cela1	1810009A17Rik|1810062B19Rik|Ela-1|Ela1|PC-TsF	chymotrypsin-like elastase family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-141369217-2	chr3	141369117	141369317	+	613.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-96347.0	NM_001293561	22253.0	Mm.24430	NM_009472	ENSMUSG00000059921	Unc5c	B130051O18Rik|Unc5h3|rcm	unc-5 netrin receptor C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167093687-4	chr2	167093609	167093809	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28416.0	NR_028540	100217443.0		NR_028540		Snord12	MBII-99	small nucleolar RNA, C/D box 12	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139328540-2	chr5	139328440	139328640	+	999.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-3076.0	NM_172723	231821.0	Mm.297819	NM_172723	ENSMUSG00000056413	Adap1	4930431P11Rik|Centa1|GC1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-155737433-2	chr1	155737353	155737553	+	903.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010712, intron 1 of 5)	CpG	4574.0	NM_010712	16872.0	Mm.103624	NM_010712	ENSMUSG00000026468	Lhx4	A330062J17Rik|Gsh-4|Gsh4	LIM homeobox protein 4	protein-coding	1.65612690635787	2.2883143642193	1.9529823620088	2.83893430251174	1.10085157779616	2.18168104332496	1.16628548519406	2.15106391175535	-1.25625041527545	0.24453882357067	0.743029749755419
Merged-chr4-129504057-1	chr4	129503957	129504157	+	571.0	f0_balb.idr	Intergenic	Intergenic	-9524.0	NM_010807	17357.0	Mm.424974	NM_010807	ENSMUSG00000047945	Marcksl1	AL022768|AW215397|AW536807|D4Bc1|F52|MacMARCKS|Macs2|Macs3|Mlp|Mrp	MARCKS-like 1	protein-coding	-0.734697168562934	-1.28094420828655	-1.29131886204401	-1.29984091153697	-1.31008363841169	-1.2786959775384	-1.28897026783925	-1.29831546875223	-2.42902550944018	0.482518537989684	1
Merged-chr11-3102383-1	chr11	3102283	3102483	+	614.5	f1_balb.idr	Intergenic	GSAT_MM|Satellite|Satellite	-21638.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120821082-1	chr8	120820982	120821182	+	710.0	f0_balb.idr	Intergenic	Intergenic	82443.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-29546366-4	chr11	29546258	29546458	+	980.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_133767)	TTS (NM_133767)	-1592.0	NM_028504	73324.0	Mm.69388	NM_028504	ENSMUSG00000020461	Clhc1	1700034F02Rik	clathrin heavy chain linker domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-75929451-2	chr15	75929351	75929551	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357005, intron 1 of 10)	intron (NM_001357005, intron 1 of 10)	279.0	NM_031201	22122.0	Mm.22596	NM_031201	ENSMUSG00000022570	Tsta3	AI256181|FX|Tstap35b	tissue specific transplantation antigen P35B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-58999151-4	chr6	58999046	58999246	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153574, intron 2 of 17)	intron (NM_153574, intron 2 of 17)	25356.0	NM_153574	58909.0	Mm.28813	NM_153574	ENSMUSG00000037709	Fam13a	AI462012|D430015B01Rik|FAM13A1|Precm1	family with sequence similarity 13, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-28538857-2	chr2	28538757	28538957	+	729.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145836, intron 1 of 17)	intron (NM_001145836, intron 1 of 17)	5393.0	NM_001145836	19730.0	Mm.5236	NM_009058	ENSMUSG00000026821	Ralgds	Gnds|Rgds|mKIAA1308	ral guanine nucleotide dissociation stimulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85562893-2	chr12	85562799	85562999	+	882.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-36206.0	NM_001205052	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-105177369-4	chr14	105177258	105177458	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134077)	promoter-TSS (NM_134077)	-31.0	NM_134077	74213.0	Mm.474531	NM_134077	ENSMUSG00000022119	Rbm26	1700009P03Rik|AI447318|C230097K14Rik|C86225|MLZ-393|Pro1777|Se70-2	RNA binding motif protein 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-70478717-2	chr12	70478617	70478817	+	578.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_037248, intron 2 of 4)	L1MC4a|LINE|L1	25563.0	NM_028339	72736.0	Mm.204670	NM_028339	ENSMUSG00000021072	Tmx1	2810425A04Rik|AI465319|Txndc1	thioredoxin-related transmembrane protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-99649430-4	chr6	99649259	99649459	+	872.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025829, intron 2 of 6)	intron (NM_025829, intron 2 of 6)	17412.0	NM_025829	66892.0	Mm.32889	NM_025829	ENSMUSG00000093661	Eif4e3	1300018P11Rik|AI451927|eIF4E-3	eukaryotic translation initiation factor 4E member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5220156-2	chr17	5220056	5220256	+	977.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 4 of 19)	MER53|DNA|hAT	198611.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-57131253-4	chr9	57131151	57131351	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_102289)	promoter-TSS (NR_102289)	39.0	NR_102289	76794.0	Mm.472839	NR_102289	ENSMUSG00000086728	Man2c1os	2410133F24Rik|AI851351	mannosidase, alpha, class 2C, member 1, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-84146955-1	chr16	84146855	84147055	+	543.0	f1_balb.idr	Intergenic	Lx5|LINE|L1	-224188.0	NR_040567	75247.0	Mm.417813	NR_040567		4930553E22Rik	-	RIKEN cDNA 4930553E22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-56281694-2	chr3	56281594	56281794	+	597.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16B|LTR|ERVL	-97993.0	NM_030595	26422.0	Mm.384353	NM_030595	ENSMUSG00000027799	Nbea	Lyst2|mKIAA1544	neurobeachin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-19892360-4	chr4	19892254	19892454	+	948.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175406, intron 2 of 7)	intron (NM_175406, intron 2 of 7)	30212.0	NM_175406	242341.0	Mm.19298	NM_175406	ENSMUSG00000028238	Atp6v0d2	1620401A02Rik|AI324824|V-ATPase	ATPase, H+ transporting, lysosomal V0 subunit D2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-68708395-4	chr3	68708270	68708470	+	989.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16946.0	NM_008351	16159.0	Mm.103783	NM_008351	ENSMUSG00000027776	Il12a	IL-12p35|Il-12a|Ll12a|p35	interleukin 12a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-170709116-2	chr1	170709016	170709216	+	608.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001081304, exon 16 of 16)	3' UTR (NM_001081304, exon 16 of 16)	64584.0	NM_177068	320078.0	Mm.287131	NM_177068	ENSMUSG00000038463	Olfml2b	1110018N05Rik|4832415H08Rik|AI467542	olfactomedin-like 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-147401047-2	chr4	147400927	147401127	+	595.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039209, intron 1 of 2)	RLTR10-int|LTR|ERVK	-152250.0	NM_001014397	433804.0	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154	zinc finger protein 985	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55107785-2	chr14	55107685	55107885	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177049, exon 6 of 6)	3' UTR (NM_177049, exon 6 of 6)	-1192.0	NM_007455	11766.0	Mm.238879	NM_007455	ENSMUSG00000040701	Ap1g2	Adtg2|G2ad	adaptor protein complex AP-1, gamma 2 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-92286696-2	chr16	92286596	92286796	+	686.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5693.0	NM_134110	246133.0	Mm.156736	NM_134110	ENSMUSG00000039672	Kcne2	2200002I16Rik|AW048273|MiRP1	potassium voltage-gated channel, Isk-related subfamily, gene 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70495151-2	chr11	70495051	70495251	+	737.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-10123.0	NM_029360	75604.0	Mm.24400	NM_029360	ENSMUSG00000018919	Tm4sf5	2010003F10Rik|AI323987	transmembrane 4 superfamily member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30690533-4	chr2	30690425	30690625	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12514.0	NR_136917	665635.0	Mm.450149	NR_136917		Gm14486	-	predicted gene 14486	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-121637966-4	chr3	121637863	121638063	+	782.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_036458, intron 2 of 2)	intron (NR_036458, intron 2 of 2)	5522.0	NR_036456	100503044.0	Mm.65320	NM_176992	ENSMUSG00000044522	A730020M07Rik	-	RIKEN cDNA A730020M07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-114605723-1	chr5	114605623	114605823	+	724.0	f1_c57bl6.idr	intron (NM_001004180, intron 2 of 2)	intron (NM_001004180, intron 2 of 2)	37472.0	NM_001004180	433940.0	Mm.194212	NM_001004180	ENSMUSG00000041930	Fam222a	-	family with sequence similarity 222, member A	protein-coding	-0.909295505863045	-0.895817397635963	-0.903477811800931	-0.377229608855546	-0.908756792193705	-0.893159199153952	-0.902850713633907	-0.599585791608563	-0.896592185565226	0.77398904461321	1
Merged-chr2-119210419-3	chr2	119210311	119210511	+	866.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028054, intron 1 of 10)	intron (NM_028054, intron 1 of 10)	-1616.0	NM_139139	69408.0	Mm.222241	NM_139139	ENSMUSG00000034278	Dnajc17	1700025B16Rik|C87112|D9Bwg1371e	DnaJ heat shock protein family (Hsp40) member C17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-87447340-2	chr6	87447240	87447440	+	725.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	18346.0	NM_009756	12154.0	Mm.483321	NM_009756	ENSMUSG00000030046	Bmp10	b2b2711Clo	bone morphogenetic protein 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-150376690-2	chr1	150376590	150376790	+	646.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357579, intron 9 of 13)	Lx8b|LINE|L1	-16148.0	NM_133780	108989.0	Mm.174256	NM_133780	ENSMUSG00000006005	Tpr	2610029M07Rik|C77892	translocated promoter region, nuclear basket protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-97018165-4	chr7	97018071	97018271	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153591, intron 6 of 13)	intron (NM_153591, intron 6 of 13)	-63580.0	NM_001162477	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	3.93552437874922	3.74356319151843	3.69804511114532	4.3079021009177	3.36769410707997	3.14924961729118	3.56512222198215	3.61457299916036	-0.751654728707474	0.130482999842211	0.56544727863238
Merged-chr16-32972686-4	chr16	32972595	32972795	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081255, intron 6 of 20)	intron (NM_001081255, intron 6 of 20)	58595.0	NM_001310672	70144.0	Mm.491178	NM_001081255	ENSMUSG00000022801	Lrch3	2210409B11Rik|AW215594|Gm1742	leucine-rich repeats and calponin homology (CH) domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94482257-2	chr10	94482157	94482357	+	636.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 2 of 4)	ORR1E|LTR|ERVL-MaLR	-32600.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167624987-2	chr2	167624887	167625087	+	936.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023230, intron 1 of 3)	intron (NM_023230, intron 1 of 3)	7018.0	NM_001311146	66589.0	Mm.278783	NM_023230	ENSMUSG00000078923	Ube2v1	0610011J09Rik|AI256840|CROC-1|CROC1|D7Bwg1382e|UEV-1	ubiquitin-conjugating enzyme E2 variant 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-37398985-2	chr10	37398885	37399085	+	648.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-260059.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98589009-2	chr11	98588909	98589109	+	995.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Plat_L3|LINE|CR1	-1764.0	NM_025661	66612.0	Mm.180546	NM_025661	ENSMUSG00000038150	Ormdl3	2810011N17Rik|AI315223	ORM1-like 3 (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-86592858-4	chr9	86592766	86592966	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008615, intron 12 of 13)	intron (NM_008615, intron 12 of 13)	20813.0	NM_027100	69519.0	Mm.272517	NM_027100	ENSMUSG00000032417	Rwdd2a	1700030C20Rik|AI848608|Rwdd2	RWD domain containing 2A	protein-coding	4.91509215210847	5.53946116142845	4.99076765946784	5.27750247752576	5.13474732971503	5.7206388702632	5.96420389434636	6.14290781848884	0.671692102958442	0.0272232284543528	0.221891504752259
Merged-chr6-71273898-3	chr6	71273808	71274008	+	891.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145568, intron 1 of 3)	intron (NM_145568, intron 1 of 3)	1889.0	NM_145568	57896.0	Mm.250569	NM_145568	ENSMUSG00000053012	Krcc1	AA792894	lysine-rich coiled-coil 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27692864-4	chr2	27692772	27692972	+	820.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011305, intron 1 of 9)	intron (NM_011305, intron 1 of 9)	15671.0	NM_011305	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-59211922-4	chr3	59211823	59212023	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177855, intron 15 of 43)	intron (NM_177855, intron 15 of 43)	-1041.0	NM_028808	74191.0	Mm.90067	NM_028808	ENSMUSG00000036362	P2ry13	2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174	purinergic receptor P2Y, G-protein coupled 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-34130497-4	chr13	34130384	34130584	+	804.950012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023716)	promoter-TSS (NM_023716)	-130.0	NM_023716	73710.0	Mm.379227	NM_023716	ENSMUSG00000045136	Tubb2b	2410129E14Rik|brdp	tubulin, beta 2B class IIB	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133546052-4	chr4	133545923	133546123	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010948)	promoter-TSS (NM_010948)	4.0	NM_010948	18221.0	Mm.69	NM_010948	ENSMUSG00000028851	Nudc	SIG-92|Silg92	nudC nuclear distribution protein	protein-coding	5.93035021443869	4.94612360543912	5.0891156975719	5.73166156181512	5.72841988347363	5.32272758289771	6.41119460952975	6.01432369583662	0.481044887602856	0.124171209237674	0.552249014968455
Merged-chr16-77026203-2	chr16	77026103	77026303	+	827.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013918, intron 1 of 23)	intron (NM_013918, intron 1 of 23)	12134.0	NM_013918	30940.0	Mm.40986	NM_013918	ENSMUSG00000022867	Usp25	-	ubiquitin specific peptidase 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55854548-3	chr14	55854442	55854642	+	564.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040072, intron 1 of 7)	intron (NM_001040072, intron 1 of 7)	427.0	NM_001040072	277154.0	Mm.319347	NM_001040072	ENSMUSG00000075592	Nynrin	AA409373|C80530|mKIAA1305	NYN domain and retroviral integrase containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-64750364-2	chr7	64750264	64750464	+	641.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291166, intron 14 of 14)	intron (NM_001291166, intron 14 of 14)	122676.0	NM_023239	66647.0	Mm.19944	NM_023239	ENSMUSG00000070520	Nsmce3	5730494G16Rik|AI642138|BB044375|HCA4|Mageg1|Ndnl2|mage-g1	NSE3 homolog, SMC5-SMC6 complex component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-16381227-1	chr9	16381127	16381327	+	555.0	f0_balb.idr	Intergenic	Intergenic	-2996.0	NM_001080814	270120.0	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT atypical cadherin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-61789213-4	chr14	61789097	61789297	+	905.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-106824.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	3.45005058060205	3.87688100473337	4.58253761211392	4.60252381124521	2.17959039696784	1.72178222553426	3.45911419749141	2.9318452108991	-2.20442941937167	0.000529833769712193	0.0116731308926822
Merged-chr11-62613880-4	chr11	62613763	62613963	+	993.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357955, intron 2 of 3)	intron (NM_001357955, intron 2 of 3)	9333.0	NR_028541	100217444.0		NR_028541		Snord65	MBII-135|snoRNA135	small nucleolar RNA, C/D box 65	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-61084259-4	chr19	61084164	61084364	+	994.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018869, intron 12 of 15)	intron (NM_018869, intron 12 of 15)	56576.0	NR_131956	414758.0	Mm.100056	NM_001001737	ENSMUSG00000074733	Zfp950	5830428H23Rik|AU016073|BC055757|Gm34518|Zfp826|mszf84	zinc finger protein 950	protein-coding	1.11533120240546	0.877670592962152	1.04271578558711	1.16626409462803	1.51919723466736	1.513618989881	1.04849205206376	1.67563944045281	1.91902908609445	0.141985531166718	0.588104396871676
Merged-chr1-80660626-4	chr1	80660536	80660736	+	804.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175291, intron 1 of 55)	intron (NM_175291, intron 1 of 55)	4716.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-20888517-2	chr15	20888425	20888625	+	618.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-221775.0	NM_022816	64833.0	Mm.352763	NM_022816	ENSMUSG00000047565	Acot10	Acate3|MT-ACT48|p48	acyl-CoA thioesterase 10	protein-coding	-0.00780758252313477	0.010335885483098	0.474750927445636	-0.00017247925934083	-0.0066696848699567	0.528358118151745	0.707617737894721	0.000629092781189916	1.5317702189707	0.494039657833265	1
Merged-chr9-32591897-4	chr9	32591791	32591991	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50439.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-55004907-2	chr13	55004807	55005007	+	696.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001311128, exon 15 of 15)	exon (NM_001311128, exon 15 of 15)	15912.0	NM_001206390	212032.0	Mm.267479	NM_001033245	ENSMUSG00000025877	Hk3	HK III|HK-III	hexokinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-18035483-2	chr5	18035383	18035583	+	686.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MCa|LINE|L1	72913.0	NM_001081143	242851.0	Mm.332230	NM_001081143	ENSMUSG00000028777	Gnat3	Ggust|Gtn	guanine nucleotide binding protein, alpha transducing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-75763469-4	chr2	75763352	75763552	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58789.0	NM_010902	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	7.72368582443768	7.45735109014847	7.86729946307263	7.87363576769983	6.92637723187733	7.09294035648261	7.36561651282611	6.88722933416432	-0.693954210852413	2.45645662749472e-05	0.000961061954891794
Merged-chr3-51182711-4	chr3	51182622	51182822	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41725.0	NM_009834	12457.0	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	4.33653501083397	4.33583954248026	4.71404806605891	4.8266513754367	4.32591880457785	4.30032611029772	4.74696797550708	4.57262896961033	-0.093003045352494	0.803335715912515	0.998431161219273
Merged-chr12-69446623-6	chr12	69446532	69446732	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28918.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	5.16690587294336	5.04934477792577	4.2374976945674	4.92553239244043	6.00779166506835	5.73384142175707	5.37001040116475	6.29514450843816	1.15008652566421	0.000255762418783669	0.0065197680606936
Merged-chr13-92275133-1	chr13	92275033	92275233	+	546.0	f1_balb.idr	intron (NM_001311120, intron 13 of 23)	intron (NM_001311120, intron 13 of 23)	-79650.0	NM_010049	13361.0	Mm.23695	NM_010049	ENSMUSG00000021707	Dhfr	8430436I03Rik|AA607882|AI662710|AW555094	dihydrofolate reductase	protein-coding	0.0856845220018569	0.104961959105646	0.0986683018137106	0.643402362644474	0.0868939353414596	0.106377908442104	0.695351418270743	0.750137461509988	1.25911036994354	0.562094462073904	1
Merged-chr8-75070478-2	chr8	75070378	75070578	+	624.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_011622)	TTS (NM_011622)	-23140.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-75761294-3	chr14	75761178	75761378	+	768.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_026232)	TTS (NM_026232)	-6785.0	NM_177381	338337.0	Mm.86507	NM_177381	ENSMUSG00000034893	Cog3	E430004N23	component of oligomeric golgi complex 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-112927019-2	chr13	112926919	112927119	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172594)	promoter-TSS (NM_172594)	361.0	NM_028151	72198.0	Mm.291029	NM_028151	ENSMUSG00000016018	Skiv2l2	2610528A15Rik|Mtrex|mKIAA0052	superkiller viralicidic activity 2-like 2 (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-81065810-2	chr17	81065710	81065910	+	833.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028138)	promoter-TSS (NM_028138)	-725.0	NM_028138	72167.0	Mm.273257	NM_028138	ENSMUSG00000024246	Thumpd2	2810025A12Rik	THUMP domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-94933023-4	chr3	94932954	94933154	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009150)	promoter-TSS (NM_009150)	-29.0	NM_009150	20341.0	Mm.196558	NM_009150	ENSMUSG00000068874	Selenbp1	Lp56|Lpsb|MTO|SBP56	selenium binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-8683174-4	chr10	8683070	8683270	+	925.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-164345.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-16185157-2	chr3	16185057	16185257	+	659.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_172677, intron 2 of 5)	intron (NM_172677, intron 2 of 5)	1992.0	NM_172677	229096.0	Mm.23834	NM_172677	ENSMUSG00000047213	Ythdf3	9130022A11Rik	YTH domain family 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-123293192-4	chr7	123293093	123293293	+	861.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122641, intron 16 of 18)	intron (NM_001122641, intron 16 of 18)	76722.0	NM_001122643	70497.0	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-135237523-3	chr6	135237445	135237645	+	882.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010352, exon 7 of 7)	exon (NM_010352, exon 7 of 7)	10339.0	NM_001080552	14840.0	Mm.272306	NM_010352	ENSMUSG00000030206	Gsg1	-	germ cell associated 1	protein-coding	0.301177042222378	0.32370641018527	0.785635382204145	0.310668199912903	0.455045660093623	0.965390385040496	0.504954652179341	0.967779935516929	1.90485780739607	0.292664139176747	1
Merged-chr3-116129343-5	chr3	116129132	116129332	+	998.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011693, intron 1 of 8)	intron (NM_011693, intron 1 of 8)	456.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	4.64657687297888	3.81946156169311	4.41737522611113	3.82057520107117	4.26768003672148	4.63890965337328	4.34343572765023	4.0429895347165	0.130323615642265	0.758857488775389	0.998431161219273
Merged-chr3-97991214-2	chr3	97991114	97991314	+	710.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22324.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180401332-4	chr1	180401224	180401424	+	979.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081175, intron 2 of 7)	intron (NM_001081175, intron 2 of 7)	-70775.0	NR_003623	277333.0	Mm.389223	NM_199472		Gm5069	EG277333	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-86533941-2	chr1	86533841	86534041	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	7384.0	NM_001360830	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-170962502-3	chr1	170962386	170962586	+	619.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010187, intron 5 of 6)	intron (NM_010187, intron 5 of 6)	13585.0	NM_010187	14130.0	Mm.425062	NM_010187	ENSMUSG00000026656	Fcgr2b	AI528646|CD32|F630109E10Rik|Fc[g]RII|FcgRII|Fcgr2|Fcgr2a|Fcr-2|Fcr-3|Ly-17|Ly-m20|LyM-1|Lym-1|fcRII	Fc receptor, IgG, low affinity IIb	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-20140239-4	chr13	20140150	20140350	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	49743.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-135148868-1	chr6	135148768	135148968	+	627.0	f1_balb.idr	intron (NM_013546, intron 3 of 3)	intron (NM_013546, intron 3 of 3)	19347.0	NM_013546	15199.0	Mm.378937	NM_013546	ENSMUSG00000042770	Hebp1	Hebp|p22HBP	heme binding protein 1	protein-coding	2.41964486527572	1.8472991218013	2.09992229187077	2.16545689194578	2.07577669886387	1.85933708250918	2.72049624608386	2.05383092117665	0.179327044673405	0.839001518339162	0.998431161219273
Merged-chr16-87697626-2	chr16	87697526	87697726	+	964.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1328.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-15711804-2	chr9	15711704	15711904	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172289, intron 1 of 10)	intron (NM_172289, intron 1 of 10)	2066.0	NM_172289	234967.0	Mm.138815	NM_172289	ENSMUSG00000043885	Slc36a4	6330573I15Rik|PAT4	solute carrier family 36 (proton/amino acid symporter), member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-128019397-1	chr7	128019297	128019497	+	632.0	f0_balb.idr	Intergenic	Lx8|LINE|L1	15019.0	NM_001079932	434246.0	Mm.389924	NM_001079932	ENSMUSG00000042828	Trim72	BC067209|MG53	tripartite motif-containing 72	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-77116904-4	chr8	77116802	77117002	+	956.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083906, intron 3 of 8)	intron (NM_001083906, intron 3 of 8)	214394.0	NM_001083906	110784.0	Mm.324393	NM_001083906	ENSMUSG00000031618	Nr3c2	MR|Mlr	nuclear receptor subfamily 3, group C, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4145976-2	chr19	4145876	4146076	+	843.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_206973)	TTS (NM_206973)	-2687.0	NM_011778	23789.0	Mm.276859	NM_011778	ENSMUSG00000024835	Coro1b	-	coronin, actin binding protein 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-24830744-1	chr10	24830644	24830844	+	612.0	f1_balb.idr	intron (NM_134005, intron 2 of 24)	intron (NM_134005, intron 2 of 24)	5451.0	NM_134005	209558.0	Mm.338425	NM_134005	ENSMUSG00000019989	Enpp3	AI876438|CD203c	ectonucleotide pyrophosphatase/phosphodiesterase 3	protein-coding	-1.31349849087795	-1.28274354783242	-1.29349452597086	-1.3023256995151	-1.3130151546297	-1.28041376602105	-0.694015972326031	-1.30074492367298	2.57396649482007	0.456321314346772	1
Merged-chr4-99368261-4	chr4	99368166	99368366	+	934.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	174119.0	NM_001145967	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-30790233-4	chr16	30790137	30790337	+	959.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	190514.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72426163-2	chr6	72426063	72426263	+	558.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019802, intron 7 of 14)	ID_B1|SINE|B4	11855.0	NM_019802	56316.0	Mm.19937	NM_019802	ENSMUSG00000053460	Ggcx	-	gamma-glutamyl carboxylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-181256443-4	chr1	181256370	181256570	+	954.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44492.0	NM_145514	226757.0	Mm.289082	NM_145514	ENSMUSG00000038733	Wdr26	1600024A01Rik|AA693241|AI447817|AU044014|C77982|Gid7	WD repeat domain 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-97372725-2	chr15	97372625	97372825	+	861.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_172293, intron 4 of 5)	RMER4B|LTR|ERVK	-125438.0	NM_001164602	105827.0	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-21517058-4	chr17	21517112	21517312	+	985.0714109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18327.0	NM_144515	22710.0	Mm.296100	NM_144515	ENSMUSG00000051341	Zfp52	KRAB11|Zfp-52|Zfp76|mszf23-2|mszf24|mszf34|mszf75|zfec29	zinc finger protein 52	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-94364779-2	chr13	94364679	94364879	+	877.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009680, intron 1 of 26)	intron (NM_009680, intron 1 of 26)	5819.0	NM_009680	11774.0	Mm.21185	NM_009680	ENSMUSG00000021686	Ap3b1	AP-3|AU015684|C78395|Hps2|beta3A|pe|pearl|rim2	adaptor-related protein complex 3, beta 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-88827371-2	chr6	88827271	88827471	+	844.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011844, exon 8 of 8)	3' UTR (NM_011844, exon 8 of 8)	14564.0	NM_001362152	80283.0	Mm.166858	NM_030251	ENSMUSG00000030083	Abtb1	AI847549|BC003234|BPOZ|EF1ABP	ankyrin repeat and BTB (POZ) domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131976763-4	chr1	131976679	131976879	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_145977, exon 2 of 5)	5' UTR (NM_145977, exon 2 of 5)	6170.0	NM_145977	212980.0	Mm.200307	NM_145977	ENSMUSG00000026435	Slc45a3	2210413P12Rik|AU023994|AU043764|IPCA-6|PRST|Pcanap6	solute carrier family 45, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-84245508-4	chr1	84245411	84245611	+	998.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003948, intron 1 of 2)	L1_Mus1|LINE|L1	-26550.0	NR_105771	102465181.0		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-148656176-4	chr4	148656079	148656279	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085505, intron 3 of 10)	intron (NM_001085505, intron 3 of 10)	12862.0	NM_001085505	230909.0	Mm.332067	NM_001085505	ENSMUSG00000070577	Gm572	b2b1167Clo	predicted gene 572	protein-coding	5.01414435452707	4.45721240658344	5.37112781141794	4.73915931179055	4.73820139003521	3.95655189062736	5.56502744715665	4.91609361657662	-0.0320477247848578	0.935082061121841	0.998431161219273
Merged-chr4-45494220-3	chr4	45494127	45494327	+	776.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033306, intron 1 of 5)	intron (NM_001033306, intron 1 of 5)	36601.0	NM_001033306	230126.0	Mm.251716	NM_001033306	ENSMUSG00000044813	Shb	BC028832	src homology 2 domain-containing transforming protein B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-140990480-2	chr4	140990380	140990580	+	776.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164366, intron 1 of 28)	intron (NM_001164366, intron 1 of 28)	3607.0	NM_001164366	74772.0	Mm.205625	NM_029097	ENSMUSG00000036622	Atp13a2	1110012E06Rik|AA589443	ATPase type 13A2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-17750558-2	chr12	17750458	17750658	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016677, intron 1 of 3)	intron (NM_016677, intron 1 of 3)	59749.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-20806087-2	chr11	20805987	20806187	+	674.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	25021.0	NM_173752	216551.0	Mm.76694	NM_173752	ENSMUSG00000042363	Lgalsl	1110067D22Rik|A530071M23|Grpa|Hspc159|Lgalsla	lectin, galactoside binding-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-110672661-3	chr9	110672555	110672755	+	878.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028312, intron 1 of 6)	intron (NM_028312, intron 1 of 6)	16152.0	NM_028312	72654.0	Mm.249115	NM_028312	ENSMUSG00000019659	Ccdc12	2700094L05Rik|C76605	coiled-coil domain containing 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-158258158-4	chr2	158258067	158258267	+	964.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177850)	promoter-TSS (NM_177850)	-74.0	NM_177850	329547.0	Mm.260883	NM_177850	ENSMUSG00000052922	Bpi	9230105K17Rik|Bpifd1	bactericidal permeablility increasing protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-158167855-4	chr2	158167764	158167964	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21472.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-25396927-2	chr5	25396827	25397027	+	758.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081383, intron 6 of 58)	Lx3B|LINE|L1	101856.0	NM_001081383	231051.0	Mm.332268	NM_001081383	ENSMUSG00000038056	Kmt2c	E330008K23Rik|HALR|Mll3|mKIAA1506	lysine (K)-specific methyltransferase 2C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-49200822-4	chr13	49200730	49200930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13283.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-97085434-2	chr5	97085334	97085534	+	735.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198422, intron 6 of 6)	intron (NM_198422, intron 6 of 6)	26162.0	NM_001359910	231474.0	Mm.332505	NM_198422	ENSMUSG00000055725	Paqr3	6330415A20Rik|AY424292|RKTG	progestin and adipoQ receptor family member III	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-84533511-5	chr10	84533390	84533590	+	803.200012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175451, exon 1 of 2)	exon (NM_175451, exon 1 of 2)	398.0	NM_175451	216197.0	Mm.334999	NM_175451	ENSMUSG00000046841	Ckap4	5630400A09Rik|CLIMP-63|P63	cytoskeleton-associated protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-74775933-4	chr1	74775830	74776030	+	949.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009526, intron 1 of 3)	intron (NM_009526, intron 1 of 3)	4038.0	NM_009526	22420.0	Mm.268282	NM_009526	ENSMUSG00000033227	Wnt6	AA409270|Wnt-6	wingless-type MMTV integration site family, member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-58592888-4	chr15	58592801	58593001	+	848.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	177433.0	NM_145959	210998.0	Mm.3224	NM_145959	ENSMUSG00000037119	Fam91a1	AV220772|BC033609|D15Ertd621e|SKIN|mKIAA0493	family with sequence similarity 91, member A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105264649-4	chr8	105264549	105264749	+	999.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015821)	promoter-TSS (NM_015821)	1.0	NM_015821	50788.0	Mm.334764	NM_015821	ENSMUSG00000033313	Fbxl8	FBL8	F-box and leucine-rich repeat protein 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-103915021-2	chr5	103914921	103915121	+	715.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-3762.0	NM_001359986	246293.0	Mm.179871	NM_178741	ENSMUSG00000029312	Klhl8	2310001P09Rik|D5Ertd431e	kelch-like 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-147896698-2	chr5	147896613	147896813	+	686.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1898.0	NM_027872	71706.0	Mm.153218	NM_027872	ENSMUSG00000029650	Slc46a3	1200006F02Rik	solute carrier family 46, member 3	protein-coding	1.07816528743453	0.953900709398292	1.31536907789683	1.83743941058429	1.57502094511918	1.78181524114784	1.32493920469376	1.42772357228593	0.658937928554189	0.588737408158485	0.968687798009531
Merged-chr13-67378258-1	chr13	67378158	67378358	+	628.0	f1_c57bl6.idr	Intergenic	RLTR13B3|LTR|ERVK	-2495.0	NM_001001186	408065.0	Mm.461583	NM_001001186	ENSMUSG00000078995	Zfp456	BC065418|Rslcan-13	zinc finger protein 456	protein-coding	1.80857115277089	2.56271571976583	2.53818759900659	2.03496951147485	0.833781504250916	0.924362719798555	0.896419654970299	0.871470483750059	-5.63243037261519	3.2984736886326e-05	0.00125237618089285
Merged-chr4-145216914-2	chr4	145216814	145217014	+	934.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011610, intron 9 of 9)	intron (NM_011610, intron 9 of 9)	-21909.0	NM_001276465	230895.0	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-43462467-4	chr6	43462395	43462595	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045988, intron 1 of 2)	intron (NR_045988, intron 1 of 2)	20066.0	NR_045988	319812.0	Mm.446393	NR_045988		9430018G01Rik	-	RIKEN cDNA 9430018G01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-158229340-2	chr2	158229240	158229440	+	551.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177657)	promoter-TSS (NM_177657)	-116.0	NM_177657	228846.0	Mm.187574	NM_177657	ENSMUSG00000037813	D630003M21Rik	-	RIKEN cDNA D630003M21 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-52439029-4	chr4	52438968	52439168	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001301412)	promoter-TSS (NM_001301412)	-104.0	NR_045175	72648.0	Mm.391869	NR_045175	ENSMUSG00000085763	Smc2os	2700081L22Rik	structural maintenance of chromosomes 2, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-120288297-2	chr2	120288197	120288397	+	639.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001024137, intron 1 of 19)	intron (NM_001024137, intron 1 of 19)	772.0	NM_001024137	78390.0	Mm.330507	NM_001024137	ENSMUSG00000070719	Pla2g4d	2610311B01Rik|Pla2delta|cPLA2delta	phospholipase A2, group IVD	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-59346347-2	chr19	59346247	59346447	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033222)	promoter-TSS (NM_001033222)	-567.0	NM_001033222	107368.0	Mm.27250	NM_001033222	ENSMUSG00000074746	Pdzd8	A630041P07Rik|AV329468|AW228944|Pdzk8	PDZ domain containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-9548558-2	chr14	9548458	9548658	+	812.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-335537.0	NR_030680	100042415.0	Mm.235938	NR_030680	ENSMUSG00000089686	Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-76227433-3	chr16	76227321	76227521	+	869.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	104808.0	NR_040575	78215.0	Mm.243885	NR_040575		4930578N18Rik	-	RIKEN cDNA 4930578N18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-11192330-4	chr4	11192231	11192431	+	821.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001282943, intron 1 of 11)	intron (NM_001282943, intron 1 of 11)	622.0	NM_001282943	12448.0	Mm.35867	NM_009830	ENSMUSG00000028212	Ccne2	-	cyclin E2	protein-coding	1.66248647922049	2.32722717416081	1.33569699405966	2.49701672082729	2.47129052068551	2.46820164032384	1.98058770992071	2.75360041935812	0.933386220721607	0.313364097029679	0.815052626345346
Merged-chr3-89396519-3	chr3	89396424	89396624	+	795.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040404, intron 1 of 1)	intron (NR_040404, intron 1 of 1)	2234.0	NR_040404	545539.0	Mm.393389	NR_040403	ENSMUSG00000074466	Gm15417	-	predicted gene 15417	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-54944836-1	chr1	54944736	54944936	+	694.0	f0_balb.idr	Intergenic	MER121|DNA|TcMar?	-18449.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-32819512-2	chr12	32819412	32819612	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021524)	promoter-TSS (NM_021524)	-823.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43536108-2	chr4	43536008	43536208	+	784.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_011602, exon 46 of 57)	exon (NM_011602, exon 46 of 57)	-12554.0	NM_001277875	22004.0	Mm.646	NM_009416	ENSMUSG00000028464	Tpm2	Tpm-2|Trop-2	tropomyosin 2, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-46641649-2	chr17	46641549	46641749	+	586.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357130, intron 3 of 15)	B2_Mm1t|SINE|B2	4431.0	NM_001357130	74764.0	Mm.279599	NM_029091	ENSMUSG00000003546	Klc4	1200014P03Rik|AA408085|AW146303|Knsl8	kinesin light chain 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24748324-1	chr17	24748224	24748424	+	544.0	f1_balb.idr	Intergenic	Intergenic	-4664.0	NM_001357342	328779.0	Mm.328848	NM_001012402	ENSMUSG00000039628	Hs3st6	3-OST-6	heparan sulfate (glucosamine) 3-O-sulfotransferase 6	protein-coding	-0.543515425931773	-0.532338423475872	-0.536007277737466	-0.0104135737952068	0.0222678482477018	-0.531510478268859	-0.535198669256837	-0.538339841054658	0.122105013281897	0.965564048726009	1
Merged-chr10-67030260-2	chr10	67030160	67030360	+	755.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_110511, intron 3 of 6)	intron (NR_110511, intron 3 of 6)	25185.0	NR_110511	102634101.0	Mm.445258	NR_110511	ENSMUSG00000112925	Gm31763	-	predicted gene, 31763	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5688938-4	chr19	5688787	5688987	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022012)	promoter-TSS (NM_022012)	21.0	NM_144868	104401.0	Mm.329650	NM_144868	ENSMUSG00000054874	Pcnx3	Pcnxl3|mKIAA4073	pecanex homolog 3	protein-coding	5.14608553242549	4.38913991662737	5.34374608870118	5.94618974382921	4.9023284237316	4.12562101772685	4.51577906490183	4.32546218370276	-0.975290532896801	0.0122490082868283	0.125681529155102
Merged-chr17-55970684-2	chr17	55970584	55970784	+	814.5	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001159523, exon 1 of 7)	5' UTR (NM_001159523, exon 1 of 7)	202.0	NM_009168	20420.0	Mm.20908	NM_009168	ENSMUSG00000039154	Shd	AI413439	src homology 2 domain-containing transforming protein D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-38926367-4	chr2	38926253	38926453	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010264, exon 1 of 11)	5' UTR (NM_010264, exon 1 of 11)	108.0	NM_010264	14536.0	Mm.439703	NM_010264	ENSMUSG00000063972	Nr6a1	1700113M01Rik|Gcnf|NCNF|RTR	nuclear receptor subfamily 6, group A, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-34544333-4	chr5	34544239	34544439	+	835.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145858, intron 1 of 12)	intron (NM_001145858, intron 1 of 12)	974.0	NM_001145858	24055.0	Mm.5012	NM_011893	ENSMUSG00000054520	Sh3bp2	3BP2	SH3-domain binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-107680887-3	chr3	107680775	107680975	+	762.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145542, intron 1 of 16)	intron (NM_145542, intron 1 of 16)	15181.0	NM_001357113	229709.0	Mm.220328	NM_145542	ENSMUSG00000027893	Ahcyl1	1110034F20Rik|AA409031|AA414901|Ahcy-rs3|DCAL|Irbit	S-adenosylhomocysteine hydrolase-like 1	protein-coding	-0.499940950918087	-0.487518524828365	0.0891561271406926	-0.494726023626598	-0.499164980458282	-0.486601867615524	0.100277611126392	-0.494177430718284	0.0410194320726077	0.98816738256539	1
Merged-chr1-86434554-4	chr1	86434472	86434672	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	8243.0	NM_027966	71863.0	Mm.179627	NM_027966	ENSMUSG00000036574	Tex44	1700019O17Rik	testis expressed 44	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-88009401-3	chr6	88009300	88009500	+	908.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009005, intron 3 of 5)	intron (NM_009005, intron 3 of 5)	10395.0	NM_001293655	19349.0	Mm.333233	NM_009005	ENSMUSG00000079477	Rab7	Rab7a	RAB7, member RAS oncogene family	protein-coding	1.33074478475545	1.89284524990558	0.723024646145669	1.65091006786253	0.687092657640377	2.0075360860307	0.727131963141246	0.710996864637989	-0.855040550829787	0.572336721569913	0.963911477197412
Merged-chr6-34945770-3	chr6	34945695	34945895	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001025573, exon 8 of 8)	3' UTR (NM_001025573, exon 8 of 8)	24847.0	NM_009292	20899.0	Mm.5171	NM_009292	ENSMUSG00000029848	Stra8	-	stimulated by retinoic acid gene 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-31466505-4	chr15	31466392	31466592	+	955.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172606, intron 23 of 25)	intron (NM_172606, intron 23 of 25)	-12803.0	NM_145852	252967.0	Mm.436668	NM_145852	ENSMUSG00000022236	Ropn1l	ASP|AV047578|Akapasp	ropporin 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-100589207-4	chr10	100589103	100589303	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175128)	promoter-TSS (NM_175128)	56.0	NM_175128	68281.0	Mm.268474	NM_175128	ENSMUSG00000046567	4930430F08Rik	4930571E09Rik|A730088G13Rik|AW551239|C430008C19Rik	RIKEN cDNA 4930430F08 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-106497044-5	chr3	106496975	106497175	+	738.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001093754, intron 8 of 11)	intron (NM_001093754, intron 8 of 11)	11035.0	NM_028110	72121.0	Mm.14816	NM_028110	ENSMUSG00000027901	Dennd2d	2010308M01Rik|AI451421	DENN/MADD domain containing 2D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-62130548-4	chr15	62130451	62130651	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132746, intron 2 of 6)	intron (NR_132746, intron 2 of 6)	88900.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-89873308-2	chr16	89873208	89873408	+	800.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009384, intron 6 of 27)	intron (NM_009384, intron 6 of 27)	-54956.0	NM_001145887	21844.0	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55787549-2	chr14	55787449	55787649	+	826.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164108, intron 3 of 9)	intron (NM_001164108, intron 3 of 9)	1308.0	NM_001164107	56532.0	Mm.46612	NM_019955	ENSMUSG00000022221	Ripk3	2610528K09Rik|AW107945|Rip3	receptor-interacting serine-threonine kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-172247703-4	chr1	172247595	172247795	+	945.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013734, intron 7 of 22)	MER21C|LTR|ERVL	10729.0	NM_013734	27222.0	Mm.482392	NM_013734	ENSMUSG00000007107	Atp1a4	-	ATPase, Na+/K+ transporting, alpha 4 polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-130457475-2	chr1	130457375	130457575	+	622.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010016, intron 4 of 9)	intron (NM_010016, intron 4 of 9)	5269.0	NM_010016	13136.0	Mm.101591	NM_010016	ENSMUSG00000026399	Cd55	Daf|Daf-GPI|Daf1|GPI-DAF	CD55 molecule, decay accelerating factor for complement	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-143041290-3	chr7	143041201	143041401	+	908.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110355, intron 2 of 4)	intron (NR_110355, intron 2 of 4)	-11449.0	NM_133655	12520.0	Mm.806	NM_133655	ENSMUSG00000037706	Cd81	Tapa-1|Tapa1|Tspan28	CD81 antigen	protein-coding	3.20892200629394	3.30916895895744	3.71244192166854	3.96940965680245	3.52498514057239	4.1210656653025	3.41947945440763	2.75538533914697	-0.0730686288208764	0.896872670750481	0.998431161219273
Merged-chr7-12927044-2	chr7	12926944	12927144	+	854.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029809)	promoter-TSS (NM_029809)	-372.0	NM_029809	381845.0	Mm.439896	NM_029809	ENSMUSG00000033967	Rnf225	2310014L17Rik|AV237412|C77118	ring finger protein 225	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80176493-2	chr10	80176379	80176579	+	587.166626	f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 1 of 4)	intron (NR_038088, intron 1 of 4)	-3003.0	NM_007909	13637.0	Mm.1478	NM_007909	ENSMUSG00000003070	Efna2	CEK7L|Elf1|Epl6|Eplg6|Lerk6	ephrin A2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-94212813-2	chr8	94212713	94212913	+	943.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-1751.0	NM_001357266	71805.0	Mm.458170	NM_172410	ENSMUSG00000032939	Nup93	2410008G02Rik	nucleoporin 93	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-58378024-4	chr10	58377908	58378108	+	847.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201242, intron 1 of 9)	B2_Mm2|SINE|B2	6554.0	NM_201242	110829.0	Mm.57734	NM_026148	ENSMUSG00000019920	Lims1	2310016J22Rik|4921524A02Rik|AI507642|AU021743|AW551584|C430041B13Rik|Lims1l|PINCH|PINCH1	LIM and senescent cell antigen-like domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25716977-2	chr7	25716877	25717077	+	787.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028771, intron 1 of 4)	B3|SINE|B2	2076.0	NM_028771	52132.0	Mm.278798	NM_028771	ENSMUSG00000002608	Ccdc97	1200014H14Rik|2810446P04Rik|AA545218|D7Ertd462e	coiled-coil domain containing 97	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118164745-2	chr11	118164645	118164845	+	979.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001112699, exon 13 of 13)	3' UTR (NM_001112699, exon 13 of 13)	-35526.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-47474477-6	chr4	47474369	47474569	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019998)	promoter-TSS (NM_019998)	-102.0	NM_019998	56737.0	Mm.22218	NM_019998	ENSMUSG00000039740	Alg2	1110018A23Rik|1300013N08Rik|ALPG2|CDGIi|MNCb-5081	asparagine-linked glycosylation 2 (alpha-1,3-mannosyltransferase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-77513665-3	chr1	77513524	77513724	+	613.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007936, intron 1 of 17)	intron (NM_007936, intron 1 of 17)	1464.0	NM_007936	13838.0	Mm.400747	NM_007936	ENSMUSG00000026235	Epha4	2900005C20Rik|AI385584|Cek8|Hek8|Sek|Sek1|Tyro1|rb	Eph receptor A4	protein-coding	-0.0401099109496426	0.328557416321122	-0.029284421558702	0.679699246057948	0.106605312924986	0.33601629880623	-0.0281211126562426	-0.0326428682507452	-1.33929299508535	0.532802107330616	1
Merged-chr13-30696552-3	chr13	30696429	30696629	+	881.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134068, intron 4 of 7)	intron (NM_134068, intron 4 of 7)	36470.0	NM_134068	105352.0	Mm.289646	NM_134068	ENSMUSG00000069255	Dusp22	JKAP|JSP1|LMW-DSP2|MKPX	dual specificity phosphatase 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33921656-4	chr16	33921569	33921769	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 10 of 14)	intron (NM_001145884, intron 10 of 14)	45369.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-32709953-4	chr9	32709853	32710053	+	869.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038642, intron 1 of 6)	intron (NM_001038642, intron 1 of 6)	13911.0	NM_001038642	23871.0	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	1.09408059696159	1.243167219644	1.19563042050071	1.37430112676067	0.849246440751352	0.722873303501245	0.712290073556867	1.3828047157608	-1.25890209267405	0.379872544246451	0.871899780487614
Merged-chr16-30595603-2	chr16	30595503	30595703	+	777.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4120.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80905074-4	chr7	80905069	80905269	+	807.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291280)	promoter-TSS (NM_001291280)	-107.0	NM_001291280	68039.0	Mm.22246	NM_026523	ENSMUSG00000025723	Nmb	3110023K12Rik	neuromedin B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84207975-4	chr8	84207870	84208070	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029741)	promoter-TSS (NR_029741)	-548.0	NR_029740	387216.0		NR_029740	ENSMUSG00000065611	Mir23a	Mirn23a|mir-23a|mmu-mir-23a	microRNA 23a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-38477131-4	chr15	38477009	38477209	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	13438.0	NR_105916	102465574.0		NR_105916	ENSMUSG00000099110	Mir6951	Gm27765|mmu-mir-6951	microRNA 6951	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-93984808-4	chr11	93984699	93984899	+	930.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-11292.0	NM_001199203	70834.0	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	4.19618652932992	3.85106404660254	4.17898048596033	4.11577523235556	2.64178308530555	1.72647490333624	2.19838694592097	3.49344465317579	-2.1432183505816	0.000553196196647166	0.0121413072573891
Merged-chr4-10978167-4	chr4	10978065	10978265	+	963.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29454.0	NM_175175	71801.0	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-45742565-2	chr19	45742465	45742665	+	800.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166363, intron 1 of 4)	CpG	319.0	NM_001166361	14179.0	Mm.4012	NM_010205	ENSMUSG00000025219	Fgf8	Aigf|Fgf-8	fibroblast growth factor 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-21077982-1	chr19	21077882	21078082	+	652.0	f0_balb.idr	Intergenic	Intergenic	-26728.0	NR_126458	75354.0	Mm.243873	NR_126458		4930554I06Rik	-	RIKEN cDNA 4930554I06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-51603232-2	chr16	51603135	51603335	+	698.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1C|Other|Other	384052.0	NR_153657	629091.0	Mm.364775	NR_153657		Gm29686	-	predicted gene, 29686	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-184846522-2	chr1	184846422	184846622	+	790.200012	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133684)	promoter-TSS (NM_133684)	-675.0	NM_133684	67247.0	Mm.177724	NM_133684	ENSMUSG00000073481	Marc2	2810484M10Rik|Mosc2|mARC1	mitochondrial amidoxime reducing component 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-119771004-2	chr1	119770904	119771104	+	761.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019933, intron 5 of 26)	Lx5c|LINE|L1	66067.0	NM_019933	19258.0	Mm.458796	NM_019933	ENSMUSG00000026384	Ptpn4	PTPMEG|Ptn4|TEP|TEP/mPTPMEG|hPTP-MEG	protein tyrosine phosphatase, non-receptor type 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-104583431-1	chr9	104583331	104583531	+	548.0	f0_balb.idr	intron (NM_028719, intron 1 of 15)	intron (NM_028719, intron 1 of 15)	13948.0	NM_028719	74020.0	Mm.326240	NM_028719	ENSMUSG00000032564	Cpne4	3632411M23Rik|4933406O10Rik	copine IV	protein-coding	-0.856514135634246	-1.09469227775237	-1.10552271286179	-0.697223595536493	-1.11557875604084	-1.09234527728392	-1.10307093974939	-1.11268246321507	-2.58516358545631	0.423881157370444	1
Merged-chr10-93336185-3	chr10	93336083	93336283	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_038014)	promoter-TSS (NR_038014)	-28.0	NR_038014	432488.0	Mm.32833	NR_038014		Gm17745	Gm3546	predicted gene, 17745	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-108480178-4	chr6	108480075	108480275	+	937.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 46 of 61)	intron (NM_010585, intron 46 of 61)	-9568.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	1.87809453641058	2.95585664176221	1.53310052266116	3.06707745487788	3.47354877096729	3.9861655944891	2.8743881820001	3.3960182464015	1.65116861598289	0.0254795270383839	0.212294003754535
Merged-chr1-89631969-2	chr1	89631869	89632069	+	686.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037136, intron 5 of 16)	intron (NM_001037136, intron 5 of 16)	51923.0	NR_015540	74403.0	Mm.444291	NR_015540		4933400F21Rik	1700091C04Rik|4930565K10Rik	RIKEN cDNA 4933400F21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-145089412-4	chr7	145089301	145089501	+	904.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	118718.0	NR_033626	100040049.0	Mm.102235	NR_033626	ENSMUSG00000109305	1810010D01Rik	Gm2572	RIKEN cDNA 1810010D01 gene	ncRNA	3.32503398308992	3.37524145044515	2.7090722535903	2.74400933154645	2.97338888196391	2.54521477698102	2.73016080462954	2.22988600714345	-0.79365568287949	0.249042043274283	0.747698903845194
Merged-chr9-7808245-2	chr9	7808145	7808345	+	850.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	23855.0	NR_049191	100885830.0		NR_049191	ENSMUSG00000093615	Mir5618	Gm23685|mmu-mir-5618	microRNA 5618	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-23754571-4	chr18	23754486	23754686	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162941, intron 1 of 7)	intron (NM_001162941, intron 1 of 7)	861.0	NM_001162941	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	6.82008298058592	6.72387217969453	7.02795677039256	6.7505788988546	5.35459885637826	5.93213021980522	6.18373586119225	4.98000426859614	-1.25398756603687	6.00032212260925e-07	4.23481557806269e-05
Merged-chr11-35091101-3	chr11	35090989	35091189	+	820.6444700000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30367.0	NM_011412	20564.0	Mm.478604	NM_011412	ENSMUSG00000056427	Slit3	Slil2|Slit1|b2b2362.1Clo	slit guidance ligand 3	protein-coding	2.36013167302802	3.47022412653311	2.71944494669473	3.26373404466826	3.57605028937529	3.72527581919251	3.20378512911664	3.10552922335346	0.673616435738002	0.275610504563004	0.77982362793126
Merged-chr4-137469071-2	chr4	137468971	137469171	+	662.5	f0_balb.idr|f0_c57.idr	intron (NM_008305, intron 1 of 96)	CpG	268.0	NM_008305	15530.0	Mm.273662	NM_008305	ENSMUSG00000028763	Hspg2	AI852380|Pcn|Plc|per	perlecan (heparan sulfate proteoglycan 2)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-83267699-4	chr17	83267579	83267779	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52396.0	NM_134117	106522.0	Mm.311974	NM_134117	ENSMUSG00000024247	Pkdcc	AI115348|AW548124|Adtk1|ESTM17|MAd1|Sgk493|Vlk|X83346	protein kinase domain containing, cytoplasmic	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-8444638-4	chr15	8444528	8444728	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027707)	promoter-TSS (NM_027707)	-165.0	NM_201232	71175.0	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	NIPBL cohesin loading factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-87282143-4	chr17	87282022	87282222	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028639)	promoter-TSS (NM_028639)	692.0	NR_015506	74597.0	Mm.63783	NR_015506	ENSMUSG00000085287	4833418N02Rik	-	RIKEN cDNA 4833418N02 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-91388971-1	chr9	91388871	91389071	+	599.0	f0_balb.idr	3' UTR (NM_009576, exon 5 of 5)	3' UTR (NM_009576, exon 5 of 5)	19999.0	NM_009576	22774.0	Mm.8062	NM_009576	ENSMUSG00000036972	Zic4	-	zinc finger protein of the cerebellum 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-93188362-1	chr13	93188262	93188462	+	563.0	f0_balb.idr	intron (NR_154997, intron 1 of 15)	L1_Rod|LINE|L1	4055.0	NM_001361536	100715.0	Mm.242865	NM_133905	ENSMUSG00000042167	Papd4	8030446C20Rik|AI649009|GLD-2|Gld2	PAP associated domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-51788385-4	chr17	51788203	51788403	+	864.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357637, intron 5 of 10)	intron (NM_001357637, intron 5 of 10)	23751.0	NM_001163630	20230.0	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-59208304-4	chr11	59208215	59208415	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024210)	promoter-TSS (NM_024210)	-46.0	NM_024210	67862.0	Mm.358708	NM_024210	ENSMUSG00000020441	2310033P09Rik	Mmtag2	RIKEN cDNA 2310033P09 gene	protein-coding	6.76649853799597	6.33285668899716	6.98482857585056	6.7081406654272	6.80664597047777	6.71208854801261	6.84080862977351	6.96152760787662	0.120908322949316	0.523350277579329	0.948187958023104
Merged-chr12-80768585-2	chr12	80768485	80768685	+	578.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7870.0	NM_001008423	380768.0	Mm.29367	NM_001008423	ENSMUSG00000062961	Ccdc177	Gm1568	coiled-coil domain containing 177	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-23976385-2	chr16	23976285	23976485	+	555.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001348026, intron 3 of 9)	intron (NM_001348026, intron 3 of 9)	4898.0	NM_001348026	12053.0	Mm.347398	NM_009744	ENSMUSG00000022508	Bcl6	Bcl5	B cell leukemia/lymphoma 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-75006091-4	chr14	75005988	75006188	+	874.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030568, intron 3 of 3)	intron (NR_030568, intron 3 of 3)	-9939.0	NM_198642	271221.0	Mm.320280	NM_198642	ENSMUSG00000034959	Rubcnl	5031414D18Rik|Gm744|Gm911|Kiaa0226l	RUN and cysteine rich domain containing beclin 1 interacting protein like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-58989667-3	chr15	58989549	58989749	+	973.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144800, intron 3 of 14)	intron (NM_144800, intron 3 of 14)	55839.0	NM_023172	66218.0	Mm.322294	NM_023172	ENSMUSG00000022354	Ndufb9	1190008J14Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-23557424-4	chr16	23557327	23557527	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36612.0	NM_001359083	17174.0	Mm.1213	NM_008555	ENSMUSG00000022887	Masp1	AW048060|CCPII|Crarf|Masp1/3	mannan-binding lectin serine peptidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107533991-4	chr9	107533873	107534073	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019704)	promoter-TSS (NM_019704)	28.0	NM_019704	56395.0	Mm.260153	NM_019704	ENSMUSG00000010045	Tmem115	C78915|Pl6|Pp6	transmembrane protein 115	protein-coding	5.91980051723626	6.71141494177408	6.30962097012379	5.51733560330586	6.17565507325474	6.37309887322695	6.55133035017296	6.54972739735969	0.26483540487583	0.298133104404861	0.800257675359925
Merged-chr18-4350714-5	chr18	4350514	4350714	+	828.357117	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007746, intron 1 of 7)	intron (NM_007746, intron 1 of 7)	2339.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-84174475-4	chr12	84174486	84174686	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163501, intron 1 of 12)	intron (NM_001163501, intron 1 of 12)	19429.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52630422-2	chr13	52630322	52630522	+	590.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011518, intron 7 of 13)	intron (NM_011518, intron 7 of 13)	33540.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-54645285-4	chr11	54645207	54645407	+	789.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252494, intron 16 of 28)	ORR1D2|LTR|ERVL-MaLR	49161.0	NM_001252497	192786.0	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-54767338-1	chr4	54767238	54767438	+	567.0	f0_balb.idr	Intergenic	Intergenic	-180607.0	NM_172867	242466.0	Mm.102904	NM_172867	ENSMUSG00000060206	Zfp462	6030417H05|9430078C22Rik|Gt4-2|Zfpip	zinc finger protein 462	protein-coding	-0.779151770068863	-0.770418207963517	-0.336647373722456	-0.618354274277311	-0.778610355167906	-0.769747354823358	-0.772660409492684	-0.480378953583879	-0.997256261000749	0.724690464820801	1
Merged-chr2-128709621-4	chr2	128709518	128709718	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 1 of 18)	intron (NM_008587, intron 1 of 18)	10703.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-11405311-2	chr4	11405211	11405411	+	848.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18528.0	NM_194055	207920.0	Mm.387719	NM_194055	ENSMUSG00000040728	Esrp1	2210008M09Rik|A630065D16|BC031468|Rbm35a	epithelial splicing regulatory protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-31291909-2	chr5	31291809	31292009	+	563.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026298)	promoter-TSS (NM_026298)	-795.0	NM_026298	67661.0	Mm.293023	NM_026298	ENSMUSG00000038564	Ift172	4930553F24Rik|Slb|avc1|wim	intraflagellar transport 172	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-5064233-2	chr18	5064133	5064333	+	804.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347449, intron 8 of 30)	intron (NM_001347449, intron 8 of 30)	17644.0	NM_001347449	225115.0	Mm.136791	NM_153153	ENSMUSG00000024236	Svil	AU024053|B430302E16Rik	supervillin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-148246710-3	chr6	148246615	148246815	+	747.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198967, intron 16 of 19)	intron (NM_198967, intron 16 of 19)	-34341.0	NM_001286560	67456.0	Mm.59812	NM_026168	ENSMUSG00000030304	Ergic2	1200009B18Rik|4930572C01Rik|AA408438|Ptx1	ERGIC and golgi 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-57037925-3	chr15	57037804	57038004	+	655.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	227257.0	NM_001357930	210463.0	Mm.26555	NM_172378	ENSMUSG00000022366	Slc22a22	oat-pg	solute carrier family 22 (organic cation transporter), member 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55823574-4	chr14	55823454	55823654	+	871.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1241.0	NM_001168346	73181.0	Mm.27908	NM_023699	ENSMUSG00000023411	Nfatc4	3110041H08Rik|AW107667|AW546455|Nfat3	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-80922546-2	chr12	80922446	80922646	+	733.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_033786)	TTS (NR_033786)	1901.0	NR_033786	67340.0	Mm.386790	NR_033786	ENSMUSG00000101912	1700052I22Rik	-	RIKEN cDNA 1700052I22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-36746143-2	chr8	36746087	36746287	+	742.799988	f0_balb.idr|f1_balb.idr	intron (NM_001194940, intron 5 of 17)	intron (NM_001194940, intron 5 of 17)	-13133.0	NM_001194941	50768.0	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	-0.0511809897862976	-0.0363054524468872	0.273757505993867	-0.0449511023224759	0.212074304457992	0.56838343063493	0.280960782548786	-0.0442945047731596	2.03877363414761	0.348932248436464	1
Merged-chr8-84232467-1	chr8	84232367	84232567	+	650.0	f1_c57bl6.idr	intron (NM_172503, intron 2 of 13)	RMER21A|LTR|ERV1	4575.0	NM_172503	212168.0	Mm.117094	NM_172503	ENSMUSG00000035671	Zswim4	D330002I24|E130119J17Rik	zinc finger SWIM-type containing 4	protein-coding	0.688657059829776	-0.137033628985621	-0.143029886804618	0.62540598662505	-0.154298988592176	-0.135687201188049	-0.141704075740768	-0.146868182873458	-4.02362166725071	0.0912647552597152	1
Merged-chr3-79178935-4	chr3	79178800	79179000	+	915.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33025.0	NM_001099624	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	2.3409377564142	1.46903353251441	2.99281521987287	1.1220743664054	1.68662362615586	2.67289863115812	1.15685642656792	2.30126323132713	-0.267565651375406	0.809227333006832	0.998431161219273
Merged-chr3-109464814-4	chr3	109464714	109464914	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020505, intron 2 of 26)	intron (NM_020505, intron 2 of 26)	-109193.0	NM_146139	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	5.92595441988028	5.86180970527562	6.54044206222833	6.21845492622114	4.54324677927643	4.87233088970208	5.6050430268098	5.22130281514282	-1.1820156225233	6.19903124282164e-05	0.00209606595578317
Merged-chr14-30888409-4	chr14	30888243	30888443	+	914.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018746, intron 2 of 22)	intron (NM_018746, intron 2 of 22)	1867.0	NM_001289632	16427.0	Mm.34819	NM_018746	ENSMUSG00000021922	Itih4	ITI-HC4|Itih-4|PK-120	inter alpha-trypsin inhibitor, heavy chain 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-34573687-4	chr5	34573583	34573783	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001331081)	promoter-TSS (NM_001331081)	19.0	NM_001331086	11518.0	Mm.289106	NM_013457	ENSMUSG00000029106	Add1	AI256389	adducin 1 (alpha)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16614232-4	chr7	16614149	16614349	+	778.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_136929, intron 1 of 2)	GC_rich|Low_complexity|Low_complexity	209.0	NR_136929	102634559.0	Mm.421602	NR_136928	ENSMUSG00000100583	Gm29443	-	predicted gene 29443	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-78155546-2	chr10	78155446	78155646	+	618.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC|LINE|L1	14222.0	NM_138601	28295.0	Mm.268691	NM_138601	ENSMUSG00000053329	D10Jhu81e	C21orf33|ES1	DNA segment, Chr 10, Johns Hopkins University 81 expressed	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-18924249-2	chr2	18924149	18924349	+	950.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008845, intron 1 of 9)	MLT1A|LTR|ERVL-MaLR	73872.0	NM_008845	18718.0	Mm.313977	NM_008845	ENSMUSG00000026737	Pip4k2a	AW742916|Pip5k2a	phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-36518018-4	chr15	36517915	36518115	+	976.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025712, intron 11 of 13)	B3|SINE|B2	-21224.0	NM_175134	68839.0	Mm.396537	NM_175134	ENSMUSG00000048307	Ankrd46	1110054N06Rik|AI314978|AI987733	ankyrin repeat domain 46	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-73019529-4	chr11	73019430	73019630	+	941.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_152202)	promoter-TSS (NR_152202)	522.0	NM_018883	55984.0	Mm.9998	NM_018883	ENSMUSG00000020785	Camkk1	AI846603|CaMKKalpha|Camkk	calcium/calmodulin-dependent protein kinase kinase 1, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-63875658-2	chr7	63875550	63875750	+	800.25	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-41207.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	2.07271225974553	1.42555285606407	2.66923964648378	1.61329607152441	3.55724292298348	3.09891381793971	3.36810024220461	2.20998426196366	2.16704635692028	0.00960859941835378	0.105975470349
Merged-chr12-69359438-2	chr12	69359338	69359538	+	734.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11A|LTR|ERVK	-2262.0	NM_025441	66244.0	Mm.46705	NM_025441	ENSMUSG00000020982	Nemf	1500011I12Rik|4933405E14Rik|Sdccag1	nuclear export mediator factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-45409631-2	chr18	45409531	45409731	+	675.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001312905, intron 2 of 10)	Lx3_Mus|LINE|L1	140771.0	NM_001312905	140492.0	Mm.411614	NM_080465	ENSMUSG00000054477	Kcnn2	KCa2.2|SK2|SKCA2|bc|fri	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69057800-2	chr11	69057700	69057900	+	581.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-1975.0	NM_028005	71923.0	Mm.340257	NM_028005	ENSMUSG00000045176	Borcs6	2310047M10Rik	BLOC-1 related complex subunit 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-45789806-2	chr4	45789706	45789906	+	719.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9216.0	NM_028270	72535.0	Mm.331583	NM_028270	ENSMUSG00000035561	Aldh1b1	2700007F14Rik	aldehyde dehydrogenase 1 family, member B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-107098236-4	chr3	107098124	107098324	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3343.0	NM_008417	16490.0	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-25575552-3	chr2	25575463	25575663	+	757.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029293)	promoter-TSS (NM_029293)	-692.0	NM_029293	75454.0	Mm.458079	NM_029293	ENSMUSG00000036504	Phpt1	1700008C22Rik|PHP|Php14	phosphohistidine phosphatase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-163727672-3	chr2	163727570	163727770	+	671.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001272052, intron 10 of 11)	intron (NM_001272052, intron 10 of 11)	22569.0	NM_007398	11486.0	Mm.388	NM_007398	ENSMUSG00000017697	Ada	-	adenosine deaminase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-176877918-2	chr1	176877820	176878020	+	774.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357390, intron 11 of 18)	intron (NM_001357390, intron 11 of 18)	-41787.0	NR_037996	15365.0	Mm.441435	NR_037996		Hmga2-ps1	EG666235|Gm7996|Hmgic-ps1|[y]i-c	high mobility group AT-hook 2, pseudogene 1	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-61770519-1	chr14	61770419	61770619	+	575.666687	f0_balb.idr	Intergenic	Intergenic	-88146.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	-0.777793656765518	-0.767796109544897	-0.771074317887986	-0.46508278179639	-0.777170390724075	-0.767054196356073	-0.770351508468517	-0.129579350153159	1.27859743855348	0.668800867682821	1
Merged-chr14-55604430-1	chr14	55604330	55604530	+	1000.0	f0_balb.idr	promoter-TSS (NM_001159418)	promoter-TSS (NM_001159418)	-149.0	NM_001159418	16391.0	Mm.2032	NM_008394	ENSMUSG00000002325	Irf9	Irf-9|Isgf3g|p48	interferon regulatory factor 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-5432230-4	chr15	5432152	5432352	+	925.224976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64066.0	NR_045274	71432.0	Mm.291087	NR_045274	ENSMUSG00000110018	5430437J10Rik	-	RIKEN cDNA 5430437J10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-65675829-4	chr11	65675722	65675922	+	961.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	59010.0	NR_030417	791070.0		NR_030417	ENSMUSG00000076460	Mir744	Mirn744|mir-744|mmu-mir-744	microRNA 744	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-61729394-2	chr11	61729294	61729494	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001164242)	TTS (NM_001164242)	-8595.0	NM_001033227	109342.0	Mm.441070	NM_001033227	ENSMUSG00000042371	Slc5a10	C330021F16Rik|SGLT5	solute carrier family 5 (sodium/glucose cotransporter), member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-36775451-2	chr9	36775351	36775551	+	949.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7873.0	NM_008408	16430.0	Mm.2863	NM_008408	ENSMUSG00000032116	Stt3a	AA408947|BB081708|Itm1	STT3, subunit of the oligosaccharyltransferase complex, homolog A (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-99230706-3	chr13	99230593	99230793	+	692.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004149, intron 2 of 4)	intron (NM_001004149, intron 2 of 4)	45870.0	NM_001004149	238803.0	Mm.343207	NM_001004149	ENSMUSG00000050919	Zfp366	DC-SCRIPT|Znf366	zinc finger protein 366	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-152557740-1	chr3	152557640	152557840	+	851.0	f0_balb.idr	intron (NM_001355635, intron 6 of 8)	intron (NM_001355635, intron 6 of 8)	-109173.0	NR_040386	99542.0	Mm.394921	NR_040386	ENSMUSG00000097745	AI115009	-	expressed sequence AI115009	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-58389504-4	chr13	58389390	58389590	+	826.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	3396.0	NR_029825	723902.0		NR_029825	ENSMUSG00000065434	Mir7-1	Mir7a1|Mirn7-1|miR-7a1|mir-7a-1|mmu-miR-7a1|mmu-mir-7-1	microRNA 7-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-86356342-4	chr11	86356235	86356435	+	943.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080931, intron 1 of 29)	intron (NM_001080931, intron 1 of 29)	1190.0	NM_001080931	327987.0	Mm.341886	NM_001080931	ENSMUSG00000034297	Med13	1110067M05Rik|D030023K18|Thrap1|Trap240	mediator complex subunit 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10000650-2	chr19	10000550	10000750	+	922.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_011913, intron 1 of 11)	intron (NM_011913, intron 1 of 11)	983.0	NM_011913	24115.0	Mm.31577	NM_011913	ENSMUSG00000037418	Best1	Bmd|Vmd2|mBest1	bestrophin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-74526303-2	chr17	74526203	74526403	+	588.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur2|SINE|Alu	-1992.0	NM_007566	12211.0	Mm.442564	NM_007566	ENSMUSG00000024073	Birc6	A430032G04Rik|A430040A19Rik|AA501170|Bruce|D630005A10Rik|mKIAA1289	baculoviral IAP repeat-containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88553660-4	chr3	88553546	88553746	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033526)	promoter-TSS (NM_033526)	-70.0	NM_033526	94232.0	Mm.303059	NM_033526	ENSMUSG00000008604	Ubqln4	A1Up|A1u|AI663987|CIP75|UBIN	ubiquilin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98682409-4	chr11	98682294	98682494	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009439)	promoter-TSS (NM_009439)	-160.0	NM_009439	22123.0	Mm.12194	NM_009439	ENSMUSG00000017221	Psmd3	AI255837|AntP91a|D11Bwg1349e|Psd3|Tstap91a	proteasome (prosome, macropain) 26S subunit, non-ATPase, 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-79715802-4	chr17	79715734	79715934	+	834.450012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009994)	promoter-TSS (NM_009994)	-793.0	NM_009994	13078.0	Mm.214016	NM_009994	ENSMUSG00000024087	Cyp1b1	CP1B|P4501b1	cytochrome P450, family 1, subfamily b, polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45007380-2	chr7	45007311	45007511	+	952.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_001008422, exon 7 of 11)	exon (NM_001008422, exon 7 of 11)	5076.0	NR_106021	102466218.0		NR_106021	ENSMUSG00000098839	Mir7054	Gm27557|mmu-mir-7054	microRNA 7054	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-118545425-4	chr2	118545387	118545587	+	791.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_138603)	promoter-TSS (NR_138603)	-900.0	NR_138603	171543.0	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-79981317-2	chr10	79981217	79981417	+	838.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359632, intron 1 of 9)	intron (NM_001359632, intron 1 of 9)	2943.0	NM_001359632	216157.0	Mm.29442	NM_001003949	ENSMUSG00000013858	Tmem259	AC087114.7gm2|ORF61|R32184_3|mFLJ00277	transmembrane protein 259	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-87125697-3	chr14	87125613	87125813	+	810.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019670, intron 1 of 27)	B3|SINE|B2	15511.0	NM_019670	56419.0	Mm.440585	NM_019670	ENSMUSG00000022021	Diaph3	4930417P13Rik|Dia2|Diap3|Drf3|p134MDia2	diaphanous related formin 3	protein-coding	3.19933734168745	3.02823179630176	3.87985958724973	2.10469297432773	3.15440325765446	3.05069506610877	2.94846019563761	3.1493070584093	-0.214971242705153	0.746803399045883	0.998431161219273
Merged-chr8-113656336-4	chr8	113656256	113656456	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001048145)	TTS (NM_001048145)	13143.0	NM_001048145	668110.0	Mm.390078	NM_029139	ENSMUSG00000033409	Syce1l	4930481F22Rik|MMRP|PSESS|mmrp2	synaptonemal complex central element protein 1 like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-70835649-2	chr9	70835549	70835749	+	660.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001324473, intron 1 of 8)	intron (NM_001324473, intron 1 of 8)	99159.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-111720517-4	chr4	111720403	111720603	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026470, intron 1 of 12)	intron (NM_026470, intron 1 of 12)	493.0	NM_026470	67946.0	Mm.275526	NM_026470	ENSMUSG00000034401	Spata6	1700062C23Rik|AI790763|Hash|KRP|Mash	spermatogenesis associated 6	protein-coding	3.53023206361216	3.93454567709906	3.45238468867858	2.97393458715418	3.61669678890429	3.59478772046929	3.08654103225817	3.19697783805523	-0.182731666285594	0.74180747505353	0.998431161219273
Merged-chr1-72712640-3	chr1	72712556	72712756	+	687.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009084, intron 3 of 3)	intron (NM_009084, intron 3 of 3)	1396.0	NM_009084	19981.0	Mm.21529	NM_009084	ENSMUSG00000046330	Rpl37a	-	ribosomal protein L37a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-103240241-2	chr9	103240141	103240341	+	575.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-9955.0	NM_133977	22041.0	Mm.37214	NM_133977	ENSMUSG00000032554	Trf	AI266983|Cd176|HP|Tf|Tfn|hpx	transferrin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-39309415-3	chr8	39309363	39309563	+	865.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_044988, intron 2 of 3)	intron (NR_044988, intron 2 of 3)	11483.0	NR_044988	621335.0	Mm.208080	NR_044988	ENSMUSG00000109827	Gm6213	EG621335	predicted gene 6213	ncRNA	1.62116805201372	0.964200603411377	0.945649574796001	1.71712148802496	1.73411362581937	0.968315535893629	2.16916567628265	1.72688572143593	1.1276101186876	0.385356980414701	0.876154616828737
Merged-chr8-79196913-3	chr8	79196788	79196988	+	834.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51695.0	NM_026315	67687.0	Mm.178707	NM_026315	ENSMUSG00000031682	1700011L22Rik	-	RIKEN cDNA 1700011L22 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-127252971-3	chr2	127252871	127253071	+	651.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175145, intron 2 of 3)	MIRc|SINE|MIR	4996.0	NM_175145	69470.0	Mm.200889	NM_175145	ENSMUSG00000034850	Tmem127	2310003P10Rik|AI314202|AI317350	transmembrane protein 127	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59439095-2	chr15	59438995	59439195	+	659.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164604, intron 3 of 4)	MTC|LTR|ERVL-MaLR	64897.0	NM_001164604	68501.0	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30236581-2	chr2	30236481	30236681	+	683.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_028299)	TTS (NR_028299)	1050.0	NR_028299	67350.0	Mm.402683	NR_028299		1700084E18Rik	-	RIKEN cDNA 1700084E18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-44951850-1	chr16	44951750	44951950	+	572.0	f0_balb.idr	intron (NM_027578, intron 2 of 4)	ORR1C2|LTR|ERVL-MaLR	8172.0	NM_001128132	74603.0	Mm.297337	NM_027578	ENSMUSG00000036172	Cd200r3	4733401I18Rik|4833409J19Rik|AI505817|BB106877|mCD200RLb	CD200 receptor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26659006-2	chr17	26658906	26659106	+	717.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17390.0	NM_025272	11974.0	Mm.22602	NM_025272	ENSMUSG00000015575	Atp6v0e	Atp6k|Atp6v0e1|M9.2	ATPase, H+ transporting, lysosomal V0 subunit E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-116995348-4	chr4	116995257	116995457	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009478)	promoter-TSS (NM_009478)	9.0	NM_175244	76608.0	Mm.251420	NM_175244	ENSMUSG00000046861	Hectd3	1700064K09Rik|AI467540|AW743312	HECT domain E3 ubiquitin protein ligase 3	protein-coding	2.71145161443369	1.83221802696175	3.33514927851881	3.30703835420848	2.64306575774997	1.55451853836124	2.76404882962688	3.12122745494833	-0.525008554408895	0.523792971343119	0.948197779519432
Merged-chr2-130729483-4	chr2	130729367	130729567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029432, intron 28 of 36)	intron (NM_029432, intron 28 of 36)	-31948.0	NM_001081162	269356.0	Mm.441391	NM_001081162	ENSMUSG00000074796	Slc4a11	AI503023|BTR1|NaBC1	solute carrier family 4, sodium bicarbonate transporter-like, member 11	protein-coding	5.39453616979904	5.14213967011042	5.24312953976558	5.14585860320771	5.88764356375799	5.53425041162616	5.73226599513234	5.10225709437617	0.411619572262156	0.152171400637282	0.605891304705569
Merged-chr13-41016281-4	chr13	41016163	41016363	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025387)	promoter-TSS (NM_025387)	13.0	NM_001360770	66154.0	Mm.30005	NM_025387	ENSMUSG00000021361	Tmem14c	1110021D01Rik|AU020193|HSPC194	transmembrane protein 14C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-118282239-2	chr12	118282139	118282339	+	598.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166385, intron 3 of 5)	MER74A|LTR|ERVL	19201.0	NM_009239	20688.0	Mm.34699	NM_009239	ENSMUSG00000025323	Sp4	5730497N03Rik|HF-1b|HF1-b	trans-acting transcription factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117052615-2	chr8	117052515	117052715	+	864.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029686, intron 14 of 42)	intron (NM_029686, intron 14 of 42)	29834.0	NM_029686	76645.0	Mm.159753	NM_029686	ENSMUSG00000034416	Pkd1l2	1700126L06Rik	polycystic kidney disease 1 like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-180251814-2	chr2	180251714	180251914	+	986.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5565.0	NM_025587	66481.0	Mm.289669	NM_025587	ENSMUSG00000039001	Rps21	1810049N11Rik|2410030A14Rik	ribosomal protein S21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-110220493-2	chr6	110220393	110220593	+	829.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	-425019.0	NM_001346640	108073.0	Mm.240881	NM_177328	ENSMUSG00000056755	Grm7	6330570A01Rik|BB176677|C030018L03|E130018M02Rik|Gpr1g|Gprc1g|SMN2|Tg(SMN2)89Ahmb|mGluR7	glutamate receptor, metabotropic 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-58543130-2	chr6	58543030	58543230	+	758.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41846.0	NM_001355477	26357.0	Mm.333096	NM_011920	ENSMUSG00000029802	Abcg2	ABC15|ABCP|AI428558|BCRP|Bcrp1|MXR|MXR1	ATP binding cassette subfamily G member 2 (Junior blood group)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-144687073-2	chr3	144686973	144687173	+	649.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_019464, exon 9 of 9)	3' UTR (NM_019464, exon 9 of 9)	33262.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-28036992-1	chr5	28036892	28037092	+	1000.0	f0_c57.idr	Intergenic	Intergenic	-34420.0	NM_153526	231070.0	Mm.30221	NM_153526	ENSMUSG00000045294	Insig1	1810013C12Rik|Insig-1	insulin induced gene 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-45373520-2	chr10	45373420	45373620	+	658.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37758.0	NM_024285	23828.0	Mm.332793	NM_024285	ENSMUSG00000071317	Bves	Pop1|Popdc1|mBVES	blood vessel epicardial substance	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-153968746-4	chr3	153968660	153968860	+	933.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4676.0	NM_001081263	242259.0	Mm.239962	NM_001081263	ENSMUSG00000028360	Slc44a5	AA117069|Gm422	solute carrier family 44, member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-151079146-2	chr1	151079046	151079246	+	913.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58888.0	NR_038011	402734.0	Mm.337666	NR_038011		C730036E19Rik	lncLSTR	RIKEN cDNA C730036E19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-39319878-4	chr18	39319770	39319970	+	980.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361073, intron 20 of 21)	intron (NM_001361073, intron 20 of 21)	167375.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-81745263-4	chr4	81745160	81745360	+	892.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-258247.0	NR_030570	100124446.0		NR_030570	ENSMUSG00000077941	Mir466h	Mirn466h	microRNA 466h	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-41359561-4	chr13	41359464	41359664	+	903.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017464)	promoter-TSS (NM_017464)	-563.0	NM_017464	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-74578272-3	chr2	74578217	74578417	+	705.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110209, intron 1 of 13)	intron (NM_001110209, intron 1 of 13)	631.0	NM_001110209	69605.0	Mm.156113	NM_027133	ENSMUSG00000009207	Lnpk	2310011O18Rik|4921514L11Rik|9530051D01Rik|AI666268|Lnp|Lnpk1|Ul|ulnaless	lunapark, ER junction formation factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118153169-4	chr11	118153088	118153288	+	994.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-23969.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166196945-2	chr2	166196845	166197045	+	744.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41262.0	NM_028072	72043.0	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-126534053-2	chr4	126533953	126534153	+	599.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153177)	promoter-TSS (NM_153177)	-595.0	NM_153177	76850.0	Mm.86705	NM_153177	ENSMUSG00000042500	Ago4	5730550L01Rik|AI481660|Eif2c4	argonaute RISC catalytic subunit 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-150167371-4	chr1	150167274	150167474	+	893.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-2426.0	NR_110420	102639566.0	Mm.417208	NR_110420	ENSMUSG00000097754	Ptgs2os2	Gm26687|Linc-cox2|Lincrna-cox2	prostaglandin-endoperoxide synthase 2, opposite strand 2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-32997028-1	chr6	32996928	32997128	+	570.0	f0_balb.idr	intron (NM_001355667, intron 3 of 8)	intron (NM_001355667, intron 3 of 8)	63232.0	NM_001355667	66075.0	Mm.21501	NM_025336	ENSMUSG00000053768	Chchd3	0610041L09Rik|1700039J09Rik|AW558177	coiled-coil-helix-coiled-coil-helix domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-32560222-4	chr11	32560134	32560334	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 2 of 18)	intron (NM_009288, intron 2 of 18)	26968.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	3.42335818750708	3.25573443001985	2.07399457611159	3.61561326503272	4.67301073707338	4.10210893036713	4.0962966358614	4.78319649730448	1.73633485179197	0.000882773895946592	0.0174970063935582
Merged-chr11-107478717-3	chr11	107478614	107478814	+	918.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025894)	promoter-TSS (NM_025894)	-814.0	NM_025894	66997.0	Mm.491171	NM_025894	ENSMUSG00000020720	Psmd12	1500002F15Rik|AI480719|P55	proteasome (prosome, macropain) 26S subunit, non-ATPase, 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25220673-4	chr7	25220583	25220783	+	997.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207677)	promoter-TSS (NM_207677)	-742.0	NM_175436	210172.0	Mm.129371	NM_175436	ENSMUSG00000046541	Zfp526	D030024H03Rik|Znf526	zinc finger protein 526	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-111825602-2	chr8	111825502	111825702	+	590.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011801, intron 5 of 6)	intron (NM_011801, intron 5 of 6)	28708.0	NM_011801	23837.0	Mm.279437	NM_011801	ENSMUSG00000031954	Cfdp1	AA408409|Bcnt|Bucentaur|Cfdp|cp27	craniofacial development protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-152368992-3	chr2	152368900	152369100	+	824.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001009948, exon 3 of 3)	3' UTR (NM_001009948, exon 3 of 3)	7566.0	NM_001009948	228777.0	Mm.330667	NM_001009948	ENSMUSG00000059361	Nrsn2	Gm123|Neurensin-2	neurensin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80098597-2	chr7	80098497	80098697	+	667.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173011, intron 5 of 10)	MLT1K|LTR|ERVL-MaLR	16753.0	NM_173011	269951.0	Mm.246432	NM_173011	ENSMUSG00000030541	Idh2	E430004F23|IDPm|Idh-2	isocitrate dehydrogenase 2 (NADP+), mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-107104771-2	chr4	107104671	107104871	+	616.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172873, intron 2 of 3)	intron (NM_172873, intron 2 of 3)	7880.0	NM_172873	242603.0	Mm.257231	NM_172873	ENSMUSG00000047636	Cdcp2	D030010E02Rik	CUB domain containing protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-20231592-2	chr12	20231492	20231692	+	855.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MMERGLN-int|LTR|ERV1	584187.0	NR_015521	69513.0	Mm.273972	NR_015521	ENSMUSG00000099759	1700030C10Rik	-	RIKEN cDNA 1700030C10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126857978-2	chr8	126857878	126858078	+	742.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	8958.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-48954171-2	chr7	48954071	48954271	+	663.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4902.0	NM_001111016	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-42144281-3	chr19	42144173	42144373	+	992.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3116.0	NM_183195	277010.0	Mm.206250	NM_183195	ENSMUSG00000044345	Marveld1	AI504298|Mrvldc1	MARVEL (membrane-associating) domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69171808-2	chr11	69171677	69171877	+	839.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14705.0	NM_009659	11686.0	Mm.340329	NM_009659	ENSMUSG00000032807	Alox12b	12R-LOX|Aloxe2|e-LOX2	arachidonate 12-lipoxygenase, 12R type	protein-coding	-0.056489059820784	0.157615199591654	-0.045146780005469	0.38398670230491	0.0943113991595218	-0.0383938267909412	-0.0439303465533007	0.769419956841293	0.927724721428774	0.663931063452071	1
Merged-chr8-71988716-3	chr8	71988648	71988848	+	726.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024444, intron 12 of 12)	intron (NM_024444, intron 12 of 12)	20878.0	NM_024444	72054.0	Mm.160020	NM_024444	ENSMUSG00000003484	Cyp4f18	1810054N16Rik|Cyp4f3|Cypf18	cytochrome P450, family 4, subfamily f, polypeptide 18	protein-coding	0.230805447989125	0.258876074743594	1.20408789243967	1.14724256780517	0.678416150276251	0.260904045976549	0.251818203123455	0.243970601954168	-2.42425890472004	0.2280168946867	1
Merged-chr1-180424549-1	chr1	180424449	180424649	+	545.0	f1_c57bl6.idr	TTS (NM_001081175)	TTS (NM_001081175)	58955.0	NM_001081227	381310.0	Mm.44791	NM_001081227	ENSMUSG00000053963	Stum	6330403A02Rik|Gm10001|R75555	mechanosensory transduction mediator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-123768547-1	chr9	123768447	123768647	+	557.0	f0_c57.idr	intron (NM_009913, intron 1 of 2)	intron (NM_009913, intron 1 of 2)	1336.0	NM_001166625	12769.0	Mm.440604	NM_009913	ENSMUSG00000029530	Ccr9	A130091K22Rik|Cmkbr10|GPR-9-6	chemokine (C-C motif) receptor 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-48225368-3	chr4	48225246	48225446	+	856.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355184, intron 3 of 10)	intron (NM_001355184, intron 3 of 10)	-12131.0	NR_035484	100316708.0		NR_035484	ENSMUSG00000087844	Mir1958	mmu-mir-1958	microRNA 1958	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-17838643-3	chr13	17838544	17838744	+	911.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33547.0	NM_027118	69562.0	Mm.193924	NM_027118	ENSMUSG00000041297	Cdk13	2310015O17Rik|Cdc2l5	cyclin-dependent kinase 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69581532-4	chr11	69581450	69581650	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127233, intron 1 of 10)	CpG	1191.0	NM_001127233	22059.0	Mm.222	NM_011640	ENSMUSG00000059552	Trp53	Tp53|bbl|bfy|bhy|p44|p53	transformation related protein 53	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80788541-4	chr7	80788443	80788643	+	844.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016721, intron 2 of 37)	intron (NM_016721, intron 2 of 37)	14788.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	2.28104633522659	2.84992254670854	2.47907900023858	2.82121408288964	2.1997882627473	1.35853498813269	1.97727094936876	1.54140956712276	-1.92722136491417	0.03404983496859	0.260099694367451
Merged-chr16-65554543-1	chr16	65554443	65554643	+	547.0	f1_c57bl6.idr	intron (NM_026879, intron 1 of 5)	intron (NM_026879, intron 1 of 5)	8154.0	NM_026879	68942.0	Mm.432944	NM_026879	ENSMUSG00000004843	Chmp2b	1190006E07Rik	charged multivesicular body protein 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-7218147-4	chr19	7218058	7218258	+	992.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007750)	promoter-TSS (NM_007750)	-542.0	NM_007750	12868.0	Mm.14022	NM_007750	ENSMUSG00000035885	Cox8a	COX8L	cytochrome c oxidase subunit VIIIa	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-132607882-4	chr2	132607773	132607973	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033469, intron 2 of 3)	intron (NR_033469, intron 2 of 3)	9677.0	NR_033469	767814.0	Mm.371752	NR_033468	ENSMUSG00000074783	AU019990	-	expressed sequence AU019990	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-26891525-2	chr10	26891425	26891625	+	594.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_176837, intron 12 of 14)	intron (NM_176837, intron 12 of 14)	119013.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-62283086-4	chr4	62282981	62283181	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3348.0	NM_025286	20530.0	Mm.292539	NM_025286	ENSMUSG00000066152	Slc31a2	AI604396|CTR2	solute carrier family 31, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-34099733-2	chr11	34099633	34099833	+	881.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER113|DNA|hAT-Charlie	-1179.0	NR_155520	76874.0	Mm.437529	NR_155520		4930469K13Rik	-	RIKEN cDNA 4930469K13 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-51482334-2	chr10	51482234	51482434	+	613.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008147, intron 4 of 8)	MTD|LTR|ERVL-MaLR	1722.0	NM_001291892	14727.0	Mm.439661	NM_008147	ENSMUSG00000112023	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-94539537-3	chr15	94539457	94539657	+	778.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172437, intron 2 of 8)	intron (NM_172437, intron 2 of 8)	3950.0	NM_172437	78895.0	Mm.34344	NM_172437	ENSMUSG00000033356	Pus7l	3000003F02Rik	pseudouridylate synthase 7-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-134378622-2	chr7	134378522	134378722	+	583.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1791.0	NM_001081331	71007.0	Mm.334285	NM_001081331	ENSMUSG00000030994	D7Ertd443e	4933400E14Rik|FATS|Gm497	DNA segment, Chr 7, ERATO Doi 443, expressed	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-147942448-2	chr4	147942348	147942548	+	613.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029841, intron 1 of 2)	intron (NM_029841, intron 1 of 2)	1553.0	NM_029841	77034.0	Mm.183076	NM_029841	ENSMUSG00000044496	2510039O18Rik	Kiaa2013	RIKEN cDNA 2510039O18 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-94012721-4	chr8	94012627	94012827	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011787)	promoter-TSS (NM_011787)	-87.0	NM_011787	23802.0	Mm.34641	NM_011787	ENSMUSG00000031751	Amfr	gp78	autocrine motility factor receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35428281-2	chr17	35428181	35428381	+	622.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_023124)	TTS (NM_023124)	3404.0	NM_207648	110557.0	Mm.439827	NM_207648	ENSMUSG00000073409	H2-Q6	0610037M15Rik|H-2Q6|Qa-6|Qa6	histocompatibility 2, Q region locus 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-21374027-2	chr5	21373927	21374127	+	754.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008013, intron 1 of 1)	intron (NM_008013, intron 1 of 1)	1354.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-105717175-2	chr5	105717075	105717275	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178701, intron 1 of 2)	PB1D10|SINE|Alu	16365.0	NM_178701	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-129256189-2	chr6	129256089	129256289	+	806.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17707.0	NR_040268	76432.0	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-103778805-2	chr13	103778705	103778905	+	775.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-4197.0	NM_001361085	218543.0	Mm.458176	NM_172592	ENSMUSG00000032621	Srek1	8430401B01|AI450757|AI462342|SRrp508|SRrp86|Sfrs12|Srsf12	splicing regulatory glutamine/lysine-rich protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80245067-4	chr10	80244947	80245147	+	926.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_023431)	TTS (NM_023431)	-4405.0	NM_029272	75406.0	Mm.28712	NM_029272	ENSMUSG00000020153	Ndufs7	1010001M04Rik	NADH dehydrogenase (ubiquinone) Fe-S protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-72782022-2	chr17	72781922	72782122	+	592.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54606.0	NM_027166	383295.0	Mm.277533	NM_027166	ENSMUSG00000039770	Ypel5	2310076K21Rik|CGI-127	yippee like 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96428132-2	chr3	96428032	96428232	+	893.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-13299.0	NR_001579	21748.0		NR_001579	ENSMUSG00000064796	Terc	mTER|mTR	telomerase RNA component	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64377181-2	chr5	64377081	64377281	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	90761.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-46547768-3	chr7	46547657	46547857	+	855.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013789, intron 9 of 10)	Tigger14a|DNA|TcMar-Tigger	92050.0	NM_013789	27414.0	Mm.76659	NM_013789	ENSMUSG00000030839	Sergef	DelGEF|Gef|Gnef|Gnefr	secretion regulating guanine nucleotide exchange factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-65137945-4	chr5	65137838	65138038	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359401, intron 1 of 5)	intron (NM_001359401, intron 1 of 5)	6707.0	NM_175174	71778.0	Mm.10281	NM_175174	ENSMUSG00000054920	Klhl5	1300013C10Rik	kelch-like 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-22984180-2	chr11	22984080	22984280	+	801.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-1896.0	NM_144514	17846.0	Mm.259903	NM_144514	ENSMUSG00000051355	Commd1	AI256843|Murr1|U2/Mu	COMM domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120150526-4	chr11	120150427	120150627	+	973.31665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361699, intron 1 of 16)	intron (NM_001361699, intron 1 of 16)	824.0	NM_001361698	72055.0	Mm.253403	NM_024249	ENSMUSG00000061306	Slc38a10	1810073N04Rik	solute carrier family 38, member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-37356762-4	chr13	37356673	37356873	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010745, intron 1 of 4)	intron (NM_010745, intron 1 of 4)	11428.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	2.46821237439064	1.16784593430504	1.14000885962341	2.20506263475222	2.4229547286924	2.14370369352443	1.14624857003421	2.21722529509056	0.413872742964488	0.724950425201423	0.998431161219273
Merged-chr17-29498257-4	chr17	29498168	29498368	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7223.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-87590736-4	chr6	87590626	87590826	+	985.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021381)	promoter-TSS (NM_021381)	17.0	NM_001355655	58182.0	Mm.333226	NM_021381	ENSMUSG00000049409	Prokr1	EG-VEGFR1|Gpr73|Pk-r1|Pkr1	prokineticin receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56337425-4	chr17	56337320	56337520	+	778.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172132, intron 1 of 22)	intron (NM_172132, intron 1 of 22)	11370.0	NM_001357909	193796.0	Mm.45047	NM_172132	ENSMUSG00000024201	Kdm4b	4732474L06Rik|Jmjd2b	lysine (K)-specific demethylase 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-178405682-4	chr1	178405583	178405783	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026626)	promoter-TSS (NM_026626)	-335.0	NM_026626	68226.0	Mm.252132	NM_026626	ENSMUSG00000026495	Efcab2	1700073K01Rik|D830011E08Rik	EF-hand calcium binding domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-79905588-3	chr11	79905475	79905675	+	935.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	56812.0	NM_144826	216987.0	Mm.274961	NM_144826	ENSMUSG00000035575	Utp6	4732497O03Rik|HCA66	UTP6 small subunit processome component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-14765631-2	chr9	14765531	14765731	+	722.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_029306, intron 2 of 3)	intron (NM_029306, intron 2 of 3)	5399.0	NM_029306	69325.0	Mm.440453	NM_029306	ENSMUSG00000031927	1700012B09Rik	1700007P19Rik	RIKEN cDNA 1700012B09 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-119756065-2	chr8	119755965	119756165	+	656.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_026922, exon 26 of 27)	exon (NM_026922, exon 26 of 27)	22351.0	NM_028883	74347.0	Mm.358759	NM_028883	ENSMUSG00000034105	Tldc1	4632415K11Rik|Kiaa1609	TBC/LysM associated domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-142504276-1	chr6	142504176	142504376	+	1000.0	f0_balb.idr	intron (NM_008492, intron 2 of 7)	intron (NM_008492, intron 2 of 7)	3681.0	NM_008492	16832.0	Mm.9745	NM_008492	ENSMUSG00000030246	Ldhb	AI790582|H-Ldh|LDH-B|LDH-H|Ldh-2|Ldh2	lactate dehydrogenase B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67081813-3	chr10	67081703	67081903	+	813.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178606, intron 1 of 7)	intron (NM_178606, intron 1 of 7)	15185.0	NM_001204915	28193.0	Mm.41272	NM_178606	ENSMUSG00000019873	Reep3	D10Ucla1	receptor accessory protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5622805-1	chr19	5622705	5622905	+	541.0	f1_c57bl6.idr	Intergenic	ORR1D2-int|LTR|ERVL-MaLR	-12711.0	NM_178637	81601.0	Mm.228930	NM_178637	ENSMUSG00000024926	Kat5	AI839539|CPLA2|Htatip|Htatip1|PLIP|Tip55|Tip60	K(lysine) acetyltransferase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-115709583-4	chr8	115709476	115709676	+	891.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2682.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-46958475-2	chr18	46958375	46958575	+	603.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178377)	promoter-TSS (NM_178377)	-401.0	NM_178377	69456.0	Mm.210734	NM_178377	ENSMUSG00000042705	Commd10	2310003A05Rik|AU019438|DRWMS2|Tg(Vav1-icre)A2Kio|Vav-cre|Vav-iCre|Vav1-Cre|VavCre	COMM domain containing 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-82985306-9	chr10	82985289	82985489	+	866.796326	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021439)	promoter-TSS (NM_021439)	-108.0	NM_021439	58250.0	Mm.360747	NM_021439	ENSMUSG00000034612	Chst11	1110020P09Rik|C4ST|C4ST-1|C4ST1|C4s	carbohydrate sulfotransferase 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-106735798-2	chr1	106735698	106735898	+	577.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027534, intron 7 of 9)	intron (NM_027534, intron 7 of 9)	-21508.0	NM_177410	12043.0	Mm.257460	NM_009741	ENSMUSG00000057329	Bcl2	AW986256|Bcl-2|C430015F12Rik|D630044D05Rik|D830018M01Rik	B cell leukemia/lymphoma 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-35349433-4	chr2	35349345	35349545	+	802.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12436.0	NM_013515	13830.0	Mm.295284	NM_013515	ENSMUSG00000026880	Stom	Epb7.2	stomatin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-29418627-2	chr19	29418527	29418727	+	831.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021396, intron 1 of 5)	intron (NM_021396, intron 1 of 5)	7708.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-108302359-4	chr4	108302283	108302483	+	801.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1293.0	NM_001033634	414872.0	Mm.426241	NM_001033634	ENSMUSG00000034636	Zyg11b	1110046I03Rik|2810482G21Rik|D4Mgi23|Gm431|mKIAA1730	zyg-ll family member B, cell cycle regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-85262472-1	chr1	85262372	85262572	+	795.5	f1_balb.idr	intron (NM_175219, intron 1 of 7)	B1F|SINE|Alu	8094.0	NM_175219	620078.0	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik	RIKEN cDNA C130026I21 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46339374-4	chr19	46339264	46339464	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164295)	promoter-TSS (NM_001164295)	-704.0	NM_001164292	67116.0	Mm.218848	NM_024192	ENSMUSG00000036748	Cuedc2	3010002G01Rik	CUE domain containing 2	protein-coding	2.99448825364643	3.14617939477343	3.34109171576489	3.74307863194119	3.53302246391287	2.90883128111285	3.36679845908967	3.81763868468206	0.184194215514139	0.746930094122072	0.998431161219273
Merged-chr6-47740374-2	chr6	47740274	47740474	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	3857.0	NR_002841	19799.0		NR_002841		Rn4.5s	-	4.5S RNA	rRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-40116616-4	chr1	40116526	40116726	+	995.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010555, intron 5 of 8)	intron (NM_010555, intron 5 of 8)	30533.0	NM_001360800	16178.0	Mm.1349	NM_010555	ENSMUSG00000026073	Il1r2	CD121b|Il1r-2	interleukin 1 receptor, type II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-108086744-4	chr3	108086592	108086792	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028779)	promoter-TSS (NM_028779)	-26.0	NM_001289719	109674.0	Mm.274335	NM_028779	ENSMUSG00000027889	Ampd2	1200014F01Rik|AI552571|Ampd-2|m4521Dajl	adenosine monophosphate deaminase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-49193223-1	chr13	49193123	49193323	+	698.0	f0_c57.idr	intron (NM_013610, intron 1 of 3)	intron (NM_013610, intron 1 of 3)	5676.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-121815287-4	chr5	121815191	121815391	+	838.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008507)	TTS (NM_008507)	3982.0	NR_105998	102465624.0		NR_105998	ENSMUSG00000099063	Mir7031	Gm27859|mmu-mir-7031	microRNA 7031	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-92914087-2	chr1	92913987	92914187	+	711.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_181405, intron 1 of 10)	intron (NM_181405, intron 1 of 10)	3262.0	NM_181405	108657.0	Mm.200971	NM_181405	ENSMUSG00000026269	Rnpepl1	1110014H17Rik|AI894167	arginyl aminopeptidase (aminopeptidase B)-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-102424185-1	chr11	102424085	102424285	+	545.0	f1_c57bl6.idr	Intergenic	MER45A|DNA|hAT-Tip100	-6137.0	NM_008175	14824.0	Mm.1568	NM_008175	ENSMUSG00000034708	Grn	Pgrn|epithelin	granulin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-103099722-4	chr14	103099612	103099812	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347601)	promoter-TSS (NM_001347601)	-146.0	NM_001360342	50789.0	Mm.214746	NM_015822	ENSMUSG00000022124	Fbxl3	AU041772|AW212966|FBK|Fbl3a|Fbxl3a|Ovtm|Play68	F-box and leucine-rich repeat protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-16554540-3	chr5	16554428	16554628	+	866.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289458, intron 2 of 18)	intron (NM_001289458, intron 2 of 18)	627.0	NM_001289461	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-166169263-3	chr1	166169157	166169357	+	555.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39036.0	NM_001360925	59290.0	Mm.46357	NM_021610	ENSMUSG00000000544	Gpa33	2010310L10Rik|2210401D16Rik|BB116197|mA33	glycoprotein A33 (transmembrane)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-131436343-4	chr2	131436254	131436454	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-55508.0	NM_001177834	228608.0	Mm.136586	NM_145533	ENSMUSG00000027333	Smox	B130066H01Rik|PAO|PAOh1|SMO	spermine oxidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-33251067-4	chr4	33250974	33251174	+	744.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2287.0	NM_001033225	108767.0	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-38012781-3	chr1	38012696	38012896	+	849.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198303, intron 1 of 23)	L1MD2|LINE|L1	14786.0	NM_198303	226982.0	Mm.260943	NM_198303	ENSMUSG00000026083	Eif5b	A030003E17Rik|BC018347|IF2	eukaryotic translation initiation factor 5B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5577714-2	chr17	5577614	5577814	+	795.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	85114.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27565308-4	chr17	27565225	27565425	+	967.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001002895, intron 1 of 4)	intron (NM_001002895, intron 1 of 4)	402.0	NM_001002895	106672.0	Mm.61488	NM_001002895	ENSMUSG00000062753	AI413582	AI854251|Smim29	expressed sequence AI413582	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-182961922-4	chr1	182961811	182962011	+	880.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016928, intron 1 of 3)	intron (NM_016928, intron 1 of 3)	7123.0	NM_016928	53791.0	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-36185373-3	chr8	36185293	36185493	+	916.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29383.0	NR_151736	330738.0	Mm.128075	NR_151736	ENSMUSG00000109704	Gm38414	A230084N10|Gm45568	predicted gene, 38414	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-145371008-4	chr2	145370911	145371111	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053195, intron 2 of 16)	intron (NM_053195, intron 2 of 16)	128400.0	NM_053195	94249.0	Mm.217171	NM_053195	ENSMUSG00000063873	Slc24a3	NCKX3	solute carrier family 24 (sodium/potassium/calcium exchanger), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-97944695-4	chr7	97944593	97944793	+	696.737488	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177696, intron 1 of 17)	L1_Mur3|LINE|L1	24735.0	NM_177696	233537.0	Mm.375772	NM_177696	ENSMUSG00000035582	Gdpd4	4921513O04	glycerophosphodiester phosphodiesterase domain containing 4	protein-coding	-1.56355737717652	-1.81244775989375	-1.82128546162293	-1.82854501295842	-1.83962066705452	-1.81053259306168	-1.81928479966835	-1.82724555674025	-1.28500227969968	0.715751224811686	1
Merged-chr11-100626375-4	chr11	100626282	100626482	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028024, exon 4 of 4)	3' UTR (NM_028024, exon 4 of 4)	3427.0	NM_028024	71966.0	Mm.274734	NM_028024	ENSMUSG00000017837	Nkiras2	2410003M04Rik|4930527H08Rik|D630018G21Rik|KBRAS2	NFKB inhibitor interacting Ras-like protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-21713629-7	chr19	21713524	21713724	+	984.119019	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	60315.0	NM_146096	226016.0	Mm.28796	NM_146096	ENSMUSG00000047368	Abhd17b	5730446C15Rik|Cgi67|Fam108b|Fam108b1	abhydrolase domain containing 17B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-72168680-1	chr4	72168580	72168780	+	797.666687	f0_balb.idr	intron (NM_001285531, intron 6 of 6)	intron (NM_001285531, intron 6 of 6)	32213.0	NM_011599	21885.0	Mm.278444	NM_011599	ENSMUSG00000008305	Tle1	C230057C06Rik|Estm14|Grg-1|Grg1|Tle4l	transducin-like enhancer of split 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-135791205-2	chr7	135791105	135791305	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74826.0	NM_001081117	17345.0	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-80038010-3	chr15	80037950	80038150	+	780.255554	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23242.0	NM_011057	18591.0	Mm.144089	NM_011057	ENSMUSG00000000489	Pdgfb	PDGF-B|Sis	platelet derived growth factor, B polypeptide	protein-coding	1.39734611060649	1.10575616894146	1.80995265639266	1.28468182315349	1.55228209770547	2.33854341918709	2.25585054838164	1.88697883980757	1.90948182854188	0.0804815472920483	0.432356839022286
Merged-chr8-13840320-4	chr8	13840216	13840416	+	957.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2227.0	NM_153093	231201.0	Mm.423959	NM_153093	ENSMUSG00000057116	AF366264	Susp4	cDNA sequence AF366264	protein-coding	2.47621519254529	2.97439220463872	2.78613996261869	2.40438232083598	2.40142174184069	1.42604210989211	1.38590967122526	3.09368963962133	-0.757646396708926	0.415832081502396	0.896676881011847
Merged-chr2-11355814-2	chr2	11355714	11355914	+	704.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_040615, intron 1 of 2)	intron (NR_040615, intron 1 of 2)	16325.0	NR_040369	100503147.0	Mm.91961	NR_040369	ENSMUSG00000086006	Gm13293	-	predicted gene 13293	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-112999039-3	chr13	112998957	112999157	+	740.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001037914, exon 7 of 7)	exon (NM_001037914, exon 7 of 7)	5189.0	NM_001037914	622408.0	Mm.360976	NM_001037914	ENSMUSG00000074651	Mcidas	EG622408|Gm6320|Idas|Mci|Mcin	multiciliate differentiation and DNA synthesis associated cell cycle protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-138266752-2	chr2	138266652	138266852	+	598.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025431, intron 1 of 4)	intron (NM_001025431, intron 1 of 4)	10168.0	NM_001025431	228662.0	Mm.153405	NM_145534	ENSMUSG00000062098	Btbd3	mKIAA0952	BTB (POZ) domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-57162639-2	chr9	57162539	57162739	+	951.3333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4340.0	NM_025417	66199.0	Mm.41687	NM_025417	ENSMUSG00000032299	Commd4	1110039H05Rik	COMM domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-78481016-4	chr9	78480896	78481096	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010106, intron 1 of 7)	CpG	728.0	NM_010106	13627.0	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98772089-2	chr11	98771989	98772189	+	753.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_145434, exon 2 of 8)	exon (NM_145434, exon 2 of 8)	3288.0	NM_145434	217166.0	Mm.390397	NM_145434	ENSMUSG00000020889	Nr1d1	A530070C09Rik|R75201	nuclear receptor subfamily 1, group D, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-110110117-4	chr5	110110009	110110209	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163996)	promoter-TSS (NM_001163996)	17.0	NM_001163996	675812.0	Mm.442122	NM_001163996	ENSMUSG00000023284	Zfp605	A830023I12Rik	zinc finger protein 605	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-97313782-4	chr10	97313674	97313874	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-109704.0	NR_039547	100628616.0		NR_039547	ENSMUSG00000105557	Mir3966	mmu-mir-3966|mu-mir-3966	microRNA 3966	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-54814811-4	chr3	54814702	54814902	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC5a|LINE|L1	-7011.0	NM_133231	170767.0	Mm.185735	NM_133231	ENSMUSG00000036615	Rfxap	5730495K23Rik	regulatory factor X-associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-8860026-2	chr11	8859926	8860126	+	782.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	151165.0	NM_001303610	15574.0	Mm.42201	NM_008316	ENSMUSG00000020413	Hus1	-	HUS1 checkpoint clamp component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111587628-3	chr12	111587522	111587722	+	849.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021516, intron 1 of 16)	MER20|DNA|hAT-Charlie	13112.0	NM_022801	17169.0	Mm.260504	NM_021516	ENSMUSG00000007411	Mark3	1600015G02Rik|A430080F22Rik|C-TAK1|ETK-1|ETK1|Emk2|MPK10	MAP/microtubule affinity regulating kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71834791-3	chr17	71834701	71834901	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271483, intron 13 of 16)	intron (NM_001271483, intron 13 of 16)	52854.0	NM_030179	78785.0	Mm.196382	NM_030179	ENSMUSG00000024059	Clip4	1700024K14Rik|1700074B05Rik|4833417L20Rik|5830409B12Rik|Rsnl2	CAP-GLY domain containing linker protein family, member 4	protein-coding	1.5611466846925	1.77347179733913	1.19396766707136	1.16191377207244	2.69531873954649	3.24956852339394	2.3637975865755	2.91126910018814	3.59232144617181	0.000458161310350922	0.0104166846786767
Merged-chr11-67047362-4	chr11	67047263	67047463	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025510, intron 2 of 4)	intron (NM_025510, intron 2 of 4)	5255.0	NM_025510	66358.0	Mm.22511	NM_025510	ENSMUSG00000020910	Adprm	2310004I24Rik|MDS006	ADP-ribose/CDP-alcohol diphosphatase, manganese dependent	protein-coding	3.06175321773719	2.7922585188294	2.69116813291489	3.17474593768725	1.59092856135559	1.25599947777221	1.50539010529541	1.1778069932102	-4.11509278981081	0.000147233885115513	0.00421937616309535
Merged-chr7-101534266-2	chr7	101534115	101534315	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21587.0	NM_007490	11871.0	Mm.439746	NM_007490	ENSMUSG00000092517	Art2a-ps	ARTC2|Art2a|Ly92a|Rt-6|Rt6|Rt6-1	ADP-ribosyltransferase 2a, pseudogene	protein-coding	-0.885343988398316	-0.873197811915141	-0.879568534556306	-0.464008891048743	-0.884809499207366	-0.870535133016439	-0.878945546113603	-0.458408536970068	0.0285539633070526	0.992673327504828	1
Merged-chr2-128008936-4	chr2	128008909	128009109	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028765, intron 11 of 17)	intron (NM_028765, intron 11 of 17)	-117029.0	NM_207681	12125.0	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	3.27189223740732	3.49644229548988	3.29827557492719	3.02119067696649	3.07054407692886	3.12793440698755	3.76150045012849	2.93100608350731	-0.0251005231903118	0.965765831530754	0.998431161219273
Merged-chr8-57654060-2	chr8	57653960	57654160	+	560.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_040698, intron 1 of 3)	intron (NR_040698, intron 1 of 3)	-1005.0	NM_144731	108150.0	Mm.62886	NM_144731	ENSMUSG00000031608	Galnt7	AI225872	polypeptide N-acetylgalactosaminyltransferase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-43569436-3	chr11	43569339	43569539	+	617.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045530, intron 3 of 5)	intron (NM_001045530, intron 3 of 5)	32123.0	NM_008375	16204.0	Mm.142716	NM_008375	ENSMUSG00000020405	Fabp6	GT|I-15P|I-BABP|ILBP|ILBP3|Illbp	fatty acid binding protein 6, ileal (gastrotropin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-79015969-3	chr17	79015869	79016069	+	977.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001171004, intron 1 of 18)	intron (NM_001171004, intron 1 of 18)	4847.0	NM_001171004	75292.0	Mm.252776	NM_029239	ENSMUSG00000024070	Prkd3	4930557O20Rik|5730497N19Rik|PKD3|Pkcnu|Prkcn	protein kinase D3	protein-coding	2.8271977191855	2.65689365108099	3.25683496524705	2.9810338726448	2.85104458634869	3.39158789339308	3.71858922013758	3.48554751543732	0.75368320874019	0.214772074620527	0.705525650237064
Merged-chr18-39557247-2	chr18	39557147	39557347	+	834.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70002.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21630812-2	chr9	21630712	21630912	+	570.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357764, intron 1 of 34)	B2_Mm2|SINE|B2	14643.0	NM_001174078	20586.0	Mm.286593	NM_011417	ENSMUSG00000032187	Smarca4	BAF190A|Brg1|HP1-BP72|SNF2beta|SW1/SNF|b2b508.1Clo|b2b692Clo	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-113035088-4	chr13	113035006	113035206	+	945.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001281487)	promoter-TSS (NM_001281487)	-273.0	NM_001281487	238896.0		NM_001281487	ENSMUSG00000078926	Cdc20b	EG238896|EG622422	cell division cycle 20B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-22398499-4	chr8	22398397	22398597	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045473)	promoter-TSS (NR_045473)	124.0	NM_181325	18408.0	Mm.200907	NM_181325	ENSMUSG00000031482	Slc25a15	D630044L02Rik|Ornt1	solute carrier family 25 (mitochondrial carrier ornithine transporter), member 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105455463-4	chr8	105455336	105455536	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033371, intron 7 of 10)	intron (NM_001033371, intron 7 of 10)	15986.0	NM_026481	67971.0	Mm.29358	NM_026481	ENSMUSG00000014846	Tppp3	2700055K07Rik|CGI-38|Ceacam9|mmCGM8	tubulin polymerization-promoting protein family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72515213-2	chr6	72515113	72515313	+	979.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29178.0	NM_007599	12332.0	Mm.18626	NM_007599	ENSMUSG00000056737	Capg	gCap39|mbh1	capping protein (actin filament), gelsolin-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-40307908-4	chr8	40307800	40308000	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_106126)	promoter-TSS (NR_106126)	29.0	NR_106126	102466237.0		NR_106126	ENSMUSG00000098431	Mir7666	Gm27915|mmu-mir-7666	microRNA 7666	ncRNA	5.63744447588021	5.74136405675783	5.91404565281984	5.41775621170908	5.80594895343043	5.32860592197169	6.11139586066852	5.57320098826185	0.0582787252256904	0.827542230587452	0.998431161219273
Merged-chr17-33904097-4	chr17	33904001	33904201	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1034.0	NR_040470	474160.0	Mm.206186	NR_040470	ENSMUSG00000092349	Platr17	-	pluripotency associated transcript 17	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135763875-3	chr4	135763795	135763995	+	848.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085509, intron 3 of 36)	intron (NM_001085509, intron 3 of 36)	4180.0	NM_001085509	242702.0	Mm.318639	NM_001085509	ENSMUSG00000037139	Myom3	8430427K15Rik|Gm434	myomesin family, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-23766967-2	chr11	23766867	23767067	+	575.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_009044, intron 1 of 9)	intron (NM_009044, intron 1 of 9)	4003.0	NM_009044	19696.0	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-113355129-1	chr13	113355029	113355229	+	544.0	f1_balb.idr	Intergenic	Intergenic	145470.0	NM_023612	71690.0	Mm.38929	NM_023612	ENSMUSG00000042379	Esm1	0610042H23Rik|AV004503|ESM-1	endothelial cell-specific molecule 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-60714117-3	chr13	60713907	60714107	+	805.888916	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 3 of 26)	intron (NM_134062, intron 3 of 26)	72357.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	-1.56355737717652	-1.81244775989375	-1.82128546162293	-1.82854501295842	-1.83962066705452	-1.81053259306168	-1.81928479966835	-1.82724555674025	-1.28500227969968	0.715751224811686	1
Merged-chr7-80768230-2	chr7	80768130	80768330	+	608.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016721, intron 3 of 37)	intron (NM_016721, intron 3 of 37)	35101.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-119675566-3	chr2	119675445	119675645	+	998.888916	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	intron (NM_030112, intron 1 of 17)	CpG	477.0	NM_030112	76246.0	Mm.33437	NM_030112	ENSMUSG00000027304	Rtf1	2900005O08Rik|6530416A09Rik|AI853581|AU043144|AW553985|Gtl7|cbp82	RTF1, Paf1/RNA polymerase II complex component	protein-coding	2.85533086526778	4.27623655897097	4.14587443327712	2.50267046349692	2.77330520559332	2.86279838082182	3.24168037753525	3.55121112417972	-0.794497213683519	0.223193122260515	0.714791840691861
Merged-chr13-58495076-2	chr13	58494976	58495176	+	794.400024	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-91733.0	NM_001301341	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-113672643-4	chr5	113672559	113672759	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22269.0	NM_008153	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-53448748-4	chr10	53448655	53448855	+	849.383301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38873.0	NR_152767	102640074.0	Mm.412957	NR_152767		Gm36229	-	predicted gene, 36229	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-55963349-4	chr17	55963233	55963433	+	888.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028381, intron 3 of 7)	intron (NM_028381, intron 3 of 7)	-3932.0	NR_108021	100504333.0	Mm.391908	NR_108021	ENSMUSG00000097077	Gm16712	-	predicted gene, 16712	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-22631701-4	chr11	22631582	22631782	+	884.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	119399.0	NM_153596	103765.0	Mm.221274	NM_153596	ENSMUSG00000049904	Tmem17	AI503894|AW049890	transmembrane protein 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44001300-1	chr7	44001200	44001400	+	856.0	f1_balb.idr	Intergenic	Intergenic	5423.0	NM_010640	16613.0	Mm.443378	NM_010640	ENSMUSG00000044485	Klk1b11	Klk11|mGK-11	kallikrein 1-related peptidase b11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-94274247-2	chr2	94274147	94274347	+	895.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-12848.0	NR_030431	735259.0		NR_030431	ENSMUSG00000076335	Mir670	Mirn670|mir-670|mmu-mir-670	microRNA 670	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-84943812-1	chr1	84943712	84943912	+	659.0	f0_balb.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-8729.0	NM_027921	71781.0	Mm.158754	NM_027921	ENSMUSG00000026220	Slc16a14	1110004H10Rik	solute carrier family 16 (monocarboxylic acid transporters), member 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-88435880-4	chr17	88435775	88435975	+	993.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4829.0	NM_001355743	14236.0	Mm.112824	NM_180974	ENSMUSG00000034998	Foxn2	3230402J05Rik|6030465J18Rik|Fkh19|Foxn1|HTLF	forkhead box N2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35740546-4	chr17	35740441	35740641	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-31909.0	NR_045459	74601.0	Mm.410840	NR_045459	ENSMUSG00000092171	4833427F10Rik	-	RIKEN cDNA 4833427F10 gene	ncRNA	4.76479942698474	4.57115787738418	4.58409964377604	5.05656392644867	5.17378043842034	4.35110399585904	5.55513792678004	4.379647087786	0.250941757695163	0.510003766543766	0.944974548181628
Merged-chr19-45745832-2	chr19	45745732	45745932	+	599.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2948.0	NM_001166362	14179.0	Mm.4012	NM_010205	ENSMUSG00000025219	Fgf8	Aigf|Fgf-8	fibroblast growth factor 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-10767375-4	chr16	10767284	10767484	+	724.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18152.0	NM_009896	12703.0	Mm.130	NM_009896	ENSMUSG00000038037	Socs1	Cish1|Cish7|JAB|SOCS-1|SSI-1	suppressor of cytokine signaling 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-47714527-2	chr8	47714427	47714627	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172407)	promoter-TSS (NM_172407)	-596.0	NM_172407	70925.0	Mm.393807	NM_172407	ENSMUSG00000038069	Cdkn2aip	4921511I16Rik|AW208986|CARF	CDKN2A interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-25985605-4	chr15	25985500	25985700	+	878.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144523, intron 1 of 5)	B1_Mus1|SINE|Alu	1234.0	NM_144523	52521.0	Mm.29145	NM_144523	ENSMUSG00000052253	Zfp622	1110033B05Rik|D15Ertd806e|ZPR9|Znf622	zinc finger protein 622	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115601279-4	chr11	115601084	115601284	+	935.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173048, intron 1 of 16)	intron (NM_173048, intron 1 of 16)	2732.0	NM_001252067	260302.0	Mm.119479	NM_173048	ENSMUSG00000020740	Gga3	C230037M19Rik|mKIAA0154	golgi associated, gamma adaptin ear containing, ARF binding protein 3	protein-coding	0.0942134947212819	-0.147938165229576	-0.152423605866449	0.53613927606578	0.100552576777358	-0.146925348665079	0.0223665062067342	-0.155273201757871	-1.40057405448932	0.530256585864368	1
Merged-chr17-5978550-7	chr17	5978417	5978617	+	997.365051	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151772, intron 2 of 25)	intron (NR_151772, intron 2 of 25)	2931.0	NM_011523	20975.0	Mm.236068	NM_011523	ENSMUSG00000023805	Synj2	AI481647|SJ2|mKIAA0348	synaptojanin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117843820-4	chr10	117843733	117843933	+	998.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024457, intron 1 of 7)	intron (NM_024457, intron 1 of 7)	2141.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-121951957-2	chr8	121951857	121952057	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016812, intron 1 of 13)	B1_Mur4|SINE|Alu	1465.0	NM_001285983	53325.0	Mm.287163	NM_016812	ENSMUSG00000025316	Banp	AA408158|SMAR1	BTG3 associated nuclear protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-108526856-4	chr6	108526759	108526959	+	900.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 60 of 61)	MTD|LTR|ERVL-MaLR	37116.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-40329796-3	chr18	40329713	40329913	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026135, intron 1 of 1)	L1M4c|LINE|L1	71452.0	NM_026135	383348.0	Mm.76366	NM_026135	ENSMUSG00000051401	Kctd16	4930434H12Rik|Gm1267	potassium channel tetramerisation domain containing 16	protein-coding	2.77160106828735	4.21974065701197	2.93880428515032	2.41697736366635	1.64938191195911	2.30948465935314	1.56949720279786	1.21038945000547	-3.07750669644102	0.000614223017320646	0.0132385289134367
Merged-chr11-95417012-2	chr11	95416912	95417112	+	700.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359107, intron 1 of 9)	intron (NM_001359107, intron 1 of 9)	2929.0	NM_001359107	20747.0	Mm.285454	NM_025287	ENSMUSG00000057522	Spop	AI315626|Pcif1|TEF2	speckle-type POZ protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-110120780-2	chr7	110120680	110120880	+	738.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-1279.0	NM_001355058	22390.0	Mm.287173	NM_009516	ENSMUSG00000031016	Wee1	Wee1A	WEE 1 homolog 1 (S. pombe)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-75822559-4	chr7	75822446	75822646	+	895.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-25792.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21962552-4	chr9	21962390	21962590	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010149, intron 1 of 7)	intron (NM_010149, intron 1 of 7)	1086.0	NM_010149	13857.0	Mm.2653	NM_010149	ENSMUSG00000006235	Epor	-	erythropoietin receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-14893210-1	chr3	14893110	14893310	+	646.5	f0_balb.idr	intron (NM_001357334, intron 3 of 7)	intron (NM_001357334, intron 3 of 7)	6922.0	NM_009801	12349.0	Mm.1186	NM_009801	ENSMUSG00000027562	Car2	AI131712|CAII|Ca2|Car-2|Ltw-5|Lvtw-5	carbonic anhydrase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-23729244-6	chr13	23729143	23729343	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9564.0	NM_015786	50708.0	Mm.193539	NM_015786	ENSMUSG00000036181	Hist1h1c	0610008C09Rik|H1.2|H1c|H1f2|H1var1|His1a	histone cluster 1, H1c	protein-coding	4.27842197106403	3.65642246045227	3.69642378941355	3.13628812769449	4.54524927956624	4.41700257753875	2.32991029976967	3.25910285850517	0.221540701809894	0.716968826574721	0.998431161219273
Merged-chr6-47786210-2	chr6	47786110	47786310	+	932.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17442.0	NR_030485	735289.0		NR_030485	ENSMUSG00000076060	Mir704	Mirn704|mir-704|mmu-mir-704	microRNA 704	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-38244999-4	chr15	38244867	38245067	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J1|LTR|ERVL-MaLR	25764.0	NM_008757	18285.0	Mm.252830	NM_008757	ENSMUSG00000061923	Odf1	-	outer dense fiber of sperm tails 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35123075-2	chr17	35122975	35123175	+	725.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001128597, exon 2 of 3)	exon (NM_001128597, exon 2 of 3)	123.0	NM_032460	81845.0	Mm.7405	NM_032460	ENSMUSG00000092417	Gpank1	Bat-4|Bat4|D17H6S54E|G5	G patch domain and ankyrin repeats 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-11235677-4	chr4	11235571	11235771	+	877.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159595, intron 8 of 26)	intron (NM_001159595, intron 8 of 26)	18588.0	NM_178112	72656.0	Mm.246713	NM_178112	ENSMUSG00000040738	Ints8	2810013E07Rik|AV063769|D130008D20Rik	integrator complex subunit 8	protein-coding	2.65952044822527	4.1212428782077	3.01774517392435	3.66878951123466	3.24891372351373	3.36647197527739	3.43581901844454	2.94568503150445	-0.357937547134271	0.554831386217235	0.959914380895535
Merged-chr13-5791133-2	chr13	5791033	5791233	+	810.083374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	66959.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56626365-2	chr17	56626265	56626465	+	768.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357897)	promoter-TSS (NM_001357897)	538.0	NM_028782	74142.0	Mm.329136	NM_028782	ENSMUSG00000041168	Lonp1	1200017E13Rik|LON|Prss15	lon peptidase 1, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-73540429-2	chr2	73540329	73540529	+	562.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10942.0	NM_153138	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84001533-1	chr8	84001433	84001633	+	642.0	f1_balb.idr	promoter-TSS (NM_183097)	promoter-TSS (NM_183097)	-173.0	NM_183097	73453.0	Mm.75101	NM_183097	ENSMUSG00000046408	1700067K01Rik	-	RIKEN cDNA 1700067K01 gene	protein-coding	2.56715040661626	2.48822997448634	3.06177173470727	2.70332938615378	2.8533194522234	3.34660327443059	2.42450491494235	2.48663228716487	0.20844817807132	0.769323664981059	0.998431161219273
Merged-chr9-105521348-3	chr9	105521249	105521449	+	888.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253831)	promoter-TSS (NM_001253831)	-92.0	NM_001253831	235574.0	Mm.326247	NM_175025	ENSMUSG00000032570	Atp2c1	1700121J11Rik|ATP2C1A|AW061228|BCPM|D930003G21Rik|HHD|SPCA|pmr1	ATPase, Ca++-sequestering	protein-coding	0.295598515837043	0.646682671665871	0.171237924140826	0.675473013506757	0.419677640833412	0.521746633174763	0.172444203068009	0.167759858021527	-1.00590199823178	0.59705818294655	1
Merged-chr14-14632735-3	chr14	14632602	14632802	+	841.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70323.0	NM_001360505	218756.0	Mm.258893	NM_001033270	ENSMUSG00000021733	Slc4a7	E430014N10Rik|NBC3|NBCn1|NBCn1-G|Tg(Thy1-SNCA)12Mjff	solute carrier family 4, sodium bicarbonate cotransporter, member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-110424731-2	chr11	110424631	110424831	+	775.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356352, intron 1 of 11)	intron (NM_001356352, intron 1 of 11)	25629.0	NM_001356353	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59374125-4	chr15	59374009	59374209	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026746)	promoter-TSS (NM_026746)	43.0	NM_153548	223593.0	Mm.218665	NM_153548	ENSMUSG00000022350	Washc5	AL022848|C76463|E430025E21Rik|Kiaa0196|mKIAA0196|strumpellin	WASH complex subunit 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-177259817-2	chr1	177259604	177259804	+	761.1999509999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10937.0	NM_011785	23797.0	Mm.235194	NM_011785	ENSMUSG00000019699	Akt3	AI851531|D930002M15Rik|Nmf350	thymoma viral proto-oncogene 3	protein-coding	0.982193674800971	1.6745183186968	1.45369002260888	2.34498480654355	1.84050422052434	1.68742498170328	2.00891217774748	1.01440171754092	-0.0964713014533487	0.936237518933522	0.998431161219273
Merged-chr11-68968049-4	chr11	68967957	68968157	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028048)	promoter-TSS (NM_028048)	-74.0	NM_028048	71998.0	Mm.298622	NM_028048	ENSMUSG00000018740	Slc25a35	1810012H11Rik	solute carrier family 25, member 35	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83007818-2	chr6	83007718	83007918	+	754.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_033079, intron 7 of 9)	intron (NM_033079, intron 7 of 9)	25653.0	NM_010070	13448.0	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-79287919-2	chr3	79287819	79288019	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57457.0	NM_001142953	100233207.0	Mm.373801	NM_001142953	ENSMUSG00000091685	Gm17359	-	predicted gene, 17359	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-117690060-4	chr14	117689978	117690178	+	872.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011821, intron 4 of 8)	Charlie5|DNA|hAT-Charlie	263769.0	NR_105747	102465148.0		NR_105747	ENSMUSG00000098648	Mir6239	Gm28025|mmu-mir-6239	microRNA 6239	ncRNA	1.53035147121785	1.0497808280962	2.15764965608006	1.49011937055582	1.30465362641232	1.95149834260485	1.03992826746216	1.49744310132777	-0.503432932921929	0.685738004910796	0.996533206832645
Merged-chr17-87025415-4	chr17	87025283	87025483	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008838)	promoter-TSS (NM_008838)	18.0	NM_008838	18701.0	Mm.219685	NM_008838	ENSMUSG00000024145	Pigf	-	phosphatidylinositol glycan anchor biosynthesis, class F	protein-coding	6.77203377785403	6.87128722199942	6.36396229250847	6.65922030268345	6.60329357815299	6.25681427355213	6.6166752928683	6.29759393535447	-0.23791823175519	0.237427115114305	0.733870588171069
Merged-chr17-32284056-4	chr17	32283953	32284153	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198094)	promoter-TSS (NM_198094)	70.0	NM_198094	57261.0	Mm.253518	NM_020508	ENSMUSG00000024002	Brd4	Brd5|HUNK1|MCAP|WI-11513	bromodomain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-58505040-4	chr1	58504931	58505131	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271526)	promoter-TSS (NM_001271526)	78.0	NM_001271526	18393.0	Mm.3411	NM_008765	ENSMUSG00000026037	Orc2	AU041563|Orc2l	origin recognition complex, subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153113415-2	chr2	153113315	153113515	+	558.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001172117, intron 1 of 12)	LTR16C|LTR|ERVL	4947.0	NM_010407	15162.0	Mm.715	NM_010407	ENSMUSG00000003283	Hck	AI849071|Bmk	hemopoietic cell kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-65154495-4	chr12	65154398	65154598	+	929.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172578, intron 5 of 13)	L2a|LINE|L2	18082.0	NM_172578	217653.0	Mm.21144	NM_172578	ENSMUSG00000047534	Mis18bp1	6720403H11|C79407|Knl2|mKIAA1903	MIS18 binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-65524274-3	chr18	65524179	65524379	+	891.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_105742, intron 2 of 6)	intron (NR_105742, intron 2 of 6)	-55951.0	NM_207255	328977.0	Mm.286232	NM_207255	ENSMUSG00000042439	Zfp532	C530030I18Rik|Znf532|mKIAA1629	zinc finger protein 532	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-83174353-4	chr15	83174239	83174439	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2131.0	NM_029787	109754.0	Mm.22560	NM_029787	ENSMUSG00000018042	Cyb5r3	0610016L08Rik|2500002N19Rik|C85115|Dia-1|Dia1|WU:AL591952.1-001|WU:AL591952.1-002|WU:AL591952.1-003|WU:Cyb5r3	cytochrome b5 reductase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-116663574-2	chr6	116663474	116663674	+	696.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_178045, intron 1 of 10)	Tigger7|DNA|TcMar-Tigger	10262.0	NM_178045	213391.0	Mm.257931	NM_178045	ENSMUSG00000042129	Rassf4	3830411C14Rik|AD037|AI586137	Ras association (RalGDS/AF-6) domain family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6240994-2	chr19	6240894	6241094	+	812.666687	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_194348)	promoter-TSS (NM_194348)	-674.0	NM_194348	329015.0	Mm.277384	NM_194348	ENSMUSG00000024773	Atg2a	1810013C15Rik|A830054M12|BC023754|mKIAA0404	autophagy related 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-38825317-2	chr2	38825217	38825417	+	742.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_010264, intron 3 of 10)	intron (NM_010264, intron 3 of 10)	-27418.0	NR_029568	387176.0		NR_029568	ENSMUSG00000065423	Mir181a-2	Mirn181|Mirn181a|Mirn181a-2|miR-181|mir-181a|mir-181a-2	microRNA 181a-2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-40016530-1	chr12	40016430	40016630	+	820.0	f1_balb.idr	Intergenic	Intergenic	20846.0	NM_007487	11861.0	Mm.12723	NM_007487	ENSMUSG00000047446	Arl4a	AI467555|Arl4	ADP-ribosylation factor-like 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-36879877-4	chr15	36879772	36879972	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-82943.0	NM_001253806	22631.0	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-25282740-4	chr12	25282624	25282824	+	881.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	153550.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115333875-4	chr5	115333772	115333972	+	861.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_025573)	TTS (NM_025573)	6695.0	NR_036616	108014.0	Mm.287826	NM_025573	ENSMUSG00000029538	Srsf9	25kDa|2610029M16Rik|SRp30c|Sfrs9	serine/arginine-rich splicing factor 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-113099794-3	chr6	113099695	113099895	+	882.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028385, intron 1 of 21)	intron (NM_028385, intron 1 of 21)	-5140.0	NM_173005	72895.0	Mm.367159	NM_028385	ENSMUSG00000034269	Setd5	2900045N06Rik|C330007C20|C85544|mKIAA1757	SET domain containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-60468455-2	chr3	60468355	60468555	+	551.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4375.0	NM_001253713	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35307066-2	chr17	35306966	35307166	+	840.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13481.0	NM_010390	15006.0	Mm.466882	NM_010390	ENSMUSG00000079507	H2-Q1	H-2Q1|Q1|Q1b|Q1d|Q1k|Qa-1|Qa1|Qed-1	histocompatibility 2, Q region locus 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-59217706-2	chr12	59217606	59217806	+	963.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033156, intron 1 of 3)	B1_Mur4|SINE|Alu	1777.0	NM_001033156	70611.0	Mm.311026	NM_001033156	ENSMUSG00000035329	Fbxo33	5730501N20Rik|AI642135	F-box protein 33	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-94587547-3	chr11	94587424	94587624	+	816.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153807, intron 1 of 15)	ID_B1|SINE|B4	14262.0	NM_153807	264895.0	Mm.386885	NM_153807	ENSMUSG00000076435	Acsf2	-	acyl-CoA synthetase family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-119098418-1	chr8	119098318	119098518	+	652.5	f0_balb.idr	intron (NM_019707, intron 7 of 13)	intron (NM_019707, intron 7 of 13)	-246120.0	NM_024219	68196.0	Mm.358714	NM_024219	ENSMUSG00000031839	Hsbp1	0610007A03Rik|AA408769|Hsp25	heat shock factor binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-69154907-4	chr3	69154793	69154993	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_126533, intron 2 of 2)	intron (NR_126533, intron 2 of 2)	23660.0	NR_126533	381452.0	Mm.331067	NM_001243000	ENSMUSG00000094763	Gm1647	-	predicted gene 1647	ncRNA	3.45700321916674	4.17754457472234	3.32570502236648	3.32387109401043	3.93356854330587	3.6543209391841	3.5353438960575	3.24775450618415	0.00360885624113561	0.994568154289314	0.998431161219273
Merged-chr10-59888485-2	chr10	59888385	59888585	+	548.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019965, intron 1 of 8)	B4A|SINE|B4	8894.0	NM_019965	56709.0	Mm.103610	NM_019965	ENSMUSG00000020109	Dnajb12	Dj10|mDj10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-120525887-2	chr5	120525787	120525987	+	648.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177595, intron 11 of 13)	intron (NM_001177595, intron 11 of 13)	14695.0	NM_001177594	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127621148-6	chr10	127621071	127621271	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008512)	promoter-TSS (NM_008512)	-23.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-94499938-1	chr11	94499838	94500038	+	582.0	f1_c57bl6.idr	promoter-TSS (NM_027984)	promoter-TSS (NM_027984)	36.0	NM_001361558	71889.0	Mm.248620	NM_027984	ENSMUSG00000010080	Epn3	2310022G12Rik	epsin 3	protein-coding	0.904804497691594	2.33606681684325	1.78991766295793	1.52149646105085	0.907118941326449	0.944614762721947	0.932413431743297	1.53005067591645	-2.75151196832389	0.0609562790402575	0.365497685931587
Merged-chr8-33654731-4	chr8	33654765	33654965	+	804.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010344, intron 1 of 12)	intron (NM_010344, intron 1 of 12)	1627.0	NM_010344	14782.0	Mm.283573	NM_010344	ENSMUSG00000031584	Gsr	AI325518|D8Ertd238e|Gr-1|Gr1	glutathione reductase	protein-coding	-0.608838599738921	-0.125396530632923	-0.746390861718736	-0.748924450191936	-0.752500562975302	-0.542910107635549	-0.745666146677288	-0.748482012025625	-2.16119744966682	0.429103753430865	1
Merged-chr9-40397270-4	chr9	40397164	40397364	+	995.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357617, intron 2 of 20)	intron (NM_001357617, intron 2 of 20)	-20847.0	NM_001357621	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	3.3434231190105	3.0501819410509	3.32352844006263	3.06474678605028	3.01958061956413	3.28070372321138	3.17511062769849	2.64288198832623	-0.273409473268938	0.650572967446192	0.985718277077717
Merged-chr7-114275503-4	chr7	114275368	114275568	+	849.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011965, intron 1 of 9)	intron (NM_011965, intron 1 of 9)	648.0	NM_011965	26440.0	Mm.121265	NM_011965	ENSMUSG00000030751	Psma1	C2|HC2|Pros-30|alpha-type	proteasome (prosome, macropain) subunit, alpha type 1	protein-coding	0.93329216804989	0.976125181796585	0.421371210615799	0.600363176199412	0.403282909405402	0.433059559483472	0.626814713042078	1.45921720804099	0.357767265297	0.832853631507788	1
Merged-chr4-32229438-3	chr4	32229330	32229530	+	899.744446	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M3|LINE|L1	-188005.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-87501628-2	chr6	87501528	87501728	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037727, intron 1 of 10)	intron (NM_001037727, intron 1 of 10)	-5301.0	NM_175476	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-94524373-2	chr6	94524273	94524473	+	879.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_026255, intron 3 of 9)	intron (NM_026255, intron 3 of 9)	24059.0	NM_026255	67582.0	Mm.280725	NM_026255	ENSMUSG00000045100	Slc25a26	4930433D19Rik|4933433F13Rik|AW557176|D6Bwg0781e|Slc25a6	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-36692945-1	chr5	36692845	36693045	+	585.0	f1_c57bl6.idr	intron (NM_001081232, intron 1 of 8)	RSINE1|SINE|B4	3076.0	NM_001081232	320661.0	Mm.26480	NM_177221	ENSMUSG00000029190	D5Ertd579e	9030221A05Rik|A930018H20Rik|Kiaa0232	DNA segment, Chr 5, ERATO Doi 579, expressed	protein-coding	-0.762657070553555	-0.255604551687877	-0.297191510787805	-0.758477898218907	-0.762035828630521	-0.751948916039235	-0.755236199249042	-0.758037712449839	-3.16651170358236	0.276199141063791	1
Merged-chr6-70714467-4	chr6	70714369	70714569	+	997.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	77706.0	NM_009075	19895.0	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-6694651-4	chr10	6694568	6694768	+	935.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63925.0	NM_001302794	18390.0	Mm.438000	NM_011013	ENSMUSG00000000766	Oprm1	M-OR-1|MOP-R|MOR-1|MOR-1O|Oprm|mor|muOR	opioid receptor, mu 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-155210626-4	chr1	155210555	155210755	+	761.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51952.0	NM_021433	58244.0	Mm.66264	NM_021433	ENSMUSG00000026470	Stx6	2310039E05Rik|2410005I16Rik|AA437559|AI415714|AI845861	syntaxin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-10470306-4	chr15	10470212	10470412	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_030046, exon 1 of 12)	exon (NM_030046, exon 1 of 12)	204.0	NM_030046	78244.0	Mm.297862	NM_030046	ENSMUSG00000044224	Dnajc21	4930461P20Rik|9930116P15Rik	DnaJ heat shock protein family (Hsp40) member C21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-23021793-4	chr2	23021675	23021875	+	992.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077190, intron 1 of 10)	RMER19B|LTR|ERVK	18466.0	NM_001077192	11308.0	Mm.205647	NM_007380	ENSMUSG00000058835	Abi1	E3B1|NAP1|Ssh3bp1|abi-1	abl-interactor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-50036412-1	chr18	50036312	50036512	+	635.0	f1_balb.idr	intron (NM_001360935, intron 1 of 1)	intron (NM_001360935, intron 1 of 1)	5428.0	NM_001360935	106869.0	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	1.91566733764316	1.19637353944683	0.868323206668326	0.844392781305992	2.4777097351533	2.88436499115255	1.3910858457862	0.848647445300712	2.18276224893156	0.0870443979201693	0.453523805082254
Merged-chr2-27679001-2	chr2	27678901	27679101	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011305, intron 1 of 9)	intron (NM_011305, intron 1 of 9)	1800.0	NM_011305	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-91225587-2	chr13	91225487	91225687	+	587.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1600.0	NM_025770	66795.0	Mm.235385	NM_025770	ENSMUSG00000021619	Atg10	5330424L23Rik|5430428K15Rik|AI852123|APG10|Agp10|Apg10l|Apg10p|Atg10l	autophagy related 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-144200165-2	chr3	144200065	144200265	+	873.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161769, intron 2 of 4)	intron (NM_001161769, intron 2 of 4)	2167.0	NM_001161770	16911.0	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28693755-3	chr17	28693652	28693852	+	719.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168514, intron 2 of 12)	intron (NM_001168514, intron 2 of 12)	1184.0	NM_001357724	26416.0	Mm.311337	NM_011951	ENSMUSG00000053436	Mapk14	CSBP2|Crk1|Csbp1|Mxi2|PRKM14|PRKM15|p38|p38-alpha|p38MAPK|p38a|p38alpha	mitogen-activated protein kinase 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-62349622-4	chr4	62349540	62349740	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355385, intron 2 of 27)	intron (NM_001355385, intron 2 of 27)	10956.0	NM_001355385	338355.0	Mm.357792	NM_001045528	ENSMUSG00000066151	Fkbp15	BB131447|C430014M02Rik|FKBO133|FKBP-133|FKBP-15|FKBP133|mKIAA0674	FK506 binding protein 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-60284334-4	chr2	60284221	60284421	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001290660, exon 1 of 6)	5' UTR (NM_001290660, exon 1 of 6)	163.0	NM_025422	66205.0	Mm.227281	NM_025422	ENSMUSG00000060703	Cd302	1110055L24Rik|AI159627	CD302 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-119522757-3	chr1	119522669	119522869	+	592.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3385.0	NM_146103	226351.0	Mm.439806	NM_146103	ENSMUSG00000098923	Tmem185b	2500001K11Rik	transmembrane protein 185B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-43523628-4	chr19	43523515	43523715	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010324, intron 1 of 8)	intron (NM_010324, intron 1 of 8)	990.0	NM_010324	14718.0	Mm.19039	NM_010324	ENSMUSG00000025190	Got1	AI789014|Got-1|cAspAT|cCAT	glutamic-oxaloacetic transaminase 1, soluble	protein-coding	6.04875400766	4.70298411772699	6.13639624231893	5.82204957712879	5.65527762891888	6.0504800728609	6.3963144713854	6.43622642049284	0.418026904956548	0.164475881406892	0.627932209944809
Merged-chr18-6513782-2	chr18	6513682	6513882	+	703.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007935, intron 1 of 13)	intron (NM_007935, intron 1 of 13)	2326.0	NM_007935	13831.0	Mm.312133	NM_007935	ENSMUSG00000024240	Epc1	2400007E14Rik|5730566F07Rik|A930032N02Rik|mir-1893	enhancer of polycomb homolog 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-85410878-3	chr6	85410789	85410989	+	823.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12997.0	NM_001007472	384452.0	Mm.347883	NM_001007472	ENSMUSG00000068302	Noto	Flh|MmNot|Not|tc	notochord homeobox	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-106794996-2	chr6	106794896	106795096	+	564.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_175357, exon 3 of 11)	exon (NM_175357, exon 3 of 11)	5091.0	NM_021449	58799.0	Mm.290085	NM_021449	ENSMUSG00000005362	Crbn	2610203G15Rik|2900045O07Rik|AF229032|AW108261|piL	cereblon	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-24652173-4	chr18	24652064	24652264	+	942.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1527.0	NM_026779	68591.0	Mm.28252	NM_026779	ENSMUSG00000039616	Mocos	1110018O12Rik|HMCS|MCS|MOS	molybdenum cofactor sulfurase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56276268-3	chr17	56276141	56276341	+	889.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_174989, intron 1 of 1)	intron (NM_174989, intron 1 of 1)	526.0	NM_174989	106759.0	Mm.203952	NM_174989	ENSMUSG00000047123	Ticam1	AW046014|AW547018|TICAM-1|TRIF	toll-like receptor adaptor molecule 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-176847613-4	chr1	176847513	176847713	+	925.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357390, intron 8 of 18)	intron (NM_001357390, intron 8 of 18)	-11480.0	NR_037996	15365.0	Mm.441435	NR_037996		Hmga2-ps1	EG666235|Gm7996|Hmgic-ps1|[y]i-c	high mobility group AT-hook 2, pseudogene 1	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-86463885-2	chr9	86463785	86463985	+	752.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027394, intron 1 of 9)	intron (NM_027394, intron 1 of 9)	1031.0	NM_027394	70348.0	Mm.53469	NM_027394	ENSMUSG00000032415	Ube2cbp	2610018I03Rik|Ube3d	ubiquitin-conjugating enzyme E2C binding protein	protein-coding	-0.181584291154345	0.186415531315475	-0.563955759460402	-0.567066044041013	-0.57146793092527	-0.559023612987217	-0.563067329362004	-0.56652240576314	-3.47808267786897	0.200928966268721	1
Merged-chr16-70315377-2	chr16	70315277	70315477	+	827.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028803, intron 1 of 15)	intron (NM_028803, intron 1 of 15)	1428.0	NM_028803	74185.0	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-75792577-4	chr2	75792463	75792663	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39614.0	NM_172666	228061.0	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-116183567-1	chr9	116183467	116183667	+	951.3333130000001	f0_balb.idr	Intergenic	Intergenic	-5613.0	NR_152204	100043817.0	Mm.404276	NR_152204		Gm4668	-	predicted gene 4668	ncRNA	4.47369087387923	4.74473817363105	3.29164443503427	4.28340200376935	5.10979338693931	4.77627546705965	4.48594440054823	4.00652555801128	0.458689734197605	0.299210114610941	0.800488246269228
Merged-chr14-63080360-4	chr14	63080258	63080458	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25285.0	NR_046019	72609.0	Mm.387101	NR_046019		2700070H01Rik	-	RIKEN cDNA 2700070H01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-59340882-4	chr4	59340784	59340984	+	824.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163288, intron 12 of 16)	intron (NM_001163288, intron 12 of 16)	80833.0	NR_105031	101055769.0	Mm.421401	NR_105031		Gm12596	-	predicted gene 12596	ncRNA	3.92842497179888	3.46950582459202	1.50225519161164	2.77181323294078	4.03242172237942	3.49543770621145	1.51658581864529	2.66327626727381	0.0606262797654698	0.966538288042208	0.998431161219273
Merged-chr2-90671933-2	chr2	90671833	90672033	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-5282.0	NM_021512	59015.0	Mm.24532	NM_021512	ENSMUSG00000051329	Nup160	160kDa|2810011M03Rik|AA414952|AU020188|Gtl-13|Gtl1-13|Gtl13|mKIAA0197	nucleoporin 160	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-120918253-2	chr7	120918153	120918353	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164096, intron 1 of 19)	CpG	509.0	NM_001164096	26939.0	Mm.193632	NM_025298	ENSMUSG00000030880	Polr3e	RPC5|Sin	polymerase (RNA) III (DNA directed) polypeptide E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-54861421-1	chr7	54861321	54861521	+	831.75	f0_balb.idr	intron (NM_178705, intron 1 of 11)	intron (NM_178705, intron 1 of 11)	26176.0	NM_178705	233271.0	Mm.387344	NM_178705	ENSMUSG00000063297	Luzp2	9330154K17Rik|D130073E01	leucine zipper protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126174266-2	chr7	126174166	126174366	+	803.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028816, intron 1 of 23)	intron (NM_028816, intron 1 of 23)	26235.0	NM_001311143	74204.0	Mm.235663	NM_028816	ENSMUSG00000000131	Xpo6	2610005L19Rik|AL022631|C230091E20Rik|R75304|Ranbp20|exp6|mKIAA0370	exportin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-111510319-2	chr8	111510219	111510419	+	579.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001170742, intron 1 of 25)	PB1D11|SINE|Alu	11788.0	NM_001170742	319481.0	Mm.247294	NM_176923	ENSMUSG00000031959	Wdr59	5430401O09Rik|Cdw12	WD repeat domain 59	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-32878959-2	chr16	32878904	32879104	+	822.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356387, intron 1 of 7)	RMER21A|LTR|ERV1	1220.0	NM_001159349	69823.0	Mm.12831	NM_027226	ENSMUSG00000022800	Fyttd1	2010005M05Rik|3830411L18Rik|3830421F13Rik|4933423A17Rik|AI098218|AW539567|C85190	forty-two-three domain containing 1	protein-coding	0.999863108595198	1.69392250142128	0.682269674783524	1.96757753912393	1.37962715304095	0.70127402645704	0.685734023104961	0.888899759009732	-1.84767527682057	0.210335810306191	0.69949048545273
Merged-chr14-75184099-2	chr14	75183999	75184199	+	752.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008879, intron 2 of 16)	RMER1B|Other|Other	47674.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-49256877-2	chr13	49256777	49256977	+	815.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-8171.0	NM_028340	66329.0	Mm.34308	NM_025491	ENSMUSG00000021384	Susd3	1700017I11Rik|2810440J20Rik	sushi domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-104524658-1	chr3	104524558	104524758	+	700.0	f0_balb.idr	Intergenic	Lx5c|LINE|L1	-12740.0	NM_001310698	269473.0	Mm.34855	NM_001025067	ENSMUSG00000032913	Lrig2	4632419I10Rik|BB096938|LIG-2	leucine-rich repeats and immunoglobulin-like domains 2	protein-coding	0.733143156838625	0.774702821629414	1.41555021786318	1.10782164685914	1.40297606726558	1.19203788537697	0.97561605253481	1.83486732243946	1.4389286932441	0.299746783138485	0.801244565215384
Merged-chr14-122039449-2	chr14	122039349	122039549	+	799.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4775.0	NM_001037744	223262.0	Mm.297637	NM_001037744	ENSMUSG00000071229	Timm8a2	-	translocase of inner mitochondrial membrane 8A2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32609627-2	chr2	32609527	32609727	+	603.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025310, intron 2 of 5)	intron (NM_001025310, intron 2 of 5)	2642.0	NR_110347	50935.0	Mm.88831	NM_016973	ENSMUSG00000026811	St6galnac6	ST6GalNAcVI|Siat7f	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-3188472-2	chr11	3188368	3188568	+	972.916626	f0_balb.idr|f0_c57.idr	intron (NM_030207, intron 2 of 32)	intron (NM_030207, intron 2 of 32)	4995.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-140990881-2	chr4	140990781	140990981	+	617.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164366, intron 1 of 28)	B4A|SINE|B4	4008.0	NM_001164366	74772.0	Mm.205625	NM_029097	ENSMUSG00000036622	Atp13a2	1110012E06Rik|AA589443	ATPase type 13A2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-32920794-4	chr15	32920725	32920925	+	965.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_008304, exon 1 of 5)	5' UTR (NM_008304, exon 1 of 5)	102.0	NM_008304	15529.0	Mm.234266	NM_008304	ENSMUSG00000022261	Sdc2	4833414L08Rik|AA960457|Hspg1|Synd2|syndecan-2	syndecan 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91485021-5	chr2	91484960	91485160	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172668, intron 16 of 37)	L1_Rod|LINE|L1	27529.0	NM_001145857	228357.0	Mm.275149	NM_172668	ENSMUSG00000027253	Lrp4	6430526J12Rik|D230026E03|Megf7|mdig	low density lipoprotein receptor-related protein 4	protein-coding	4.62998072864266	3.70028797615876	4.63098116826738	4.12126157685882	4.41556661380789	4.07272289996377	4.86058386624559	2.89406816828466	-0.123040580282119	0.805008117547854	0.998431161219273
Merged-chr8-106106413-4	chr8	106106302	106106502	+	867.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010901, intron 8 of 9)	intron (NM_010901, intron 8 of 9)	-28998.0	NR_040345	69771.0	Mm.393274	NR_040344		1810019D21Rik	-	RIKEN cDNA 1810019D21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-104968063-2	chr12	104967963	104968163	+	610.333313	f1_balb.idr|f1_c57bl6.idr	exon (NM_172500, exon 3 of 17)	exon (NM_172500, exon 3 of 17)	30614.0	NM_001042699	212073.0	Mm.212688	NM_172500	ENSMUSG00000054150	Syne3	KASH3|nesprin-3	spectrin repeat containing, nuclear envelope family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-86146421-3	chr12	86146325	86146525	+	615.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029601, intron 4 of 7)	L1MA6|LINE|L1	-22916.0	NR_046081	328136.0	Mm.312050	NR_046081	ENSMUSG00000097543	Gm805	-	predicted gene 805	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-67048925-3	chr15	67048920	67049120	+	929.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-79379.0	NM_008681	17988.0	Mm.30837	NM_008681	ENSMUSG00000005125	Ndrg1	CAP43|CMT4D|DRG1|HMSNL|NMSL|Ndr1|Ndrl|PROXY1|RTP|TDD5	N-myc downstream regulated gene 1	protein-coding	-0.271302784271039	-0.208997154333479	-0.403966689824659	-0.407021796650744	-0.267370353360062	-0.399104810199343	-0.403092476852965	0.308922605887572	1.80203313730245	0.452461183248798	1
Merged-chr9-94278816-4	chr9	94278702	94278902	+	986.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	259279.0	NM_001033145	68861.0	Mm.258746	NM_001033145	ENSMUSG00000045414	1190002N15Rik	GoPro49|HASF	RIKEN cDNA 1190002N15 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-61275947-4	chr10	61275857	61276057	+	799.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2519.0	NM_001081127	237360.0	Mm.333252	NM_001081127	ENSMUSG00000059901	Adamts14	Adamts-14|TS14	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-16356048-4	chr5	16355955	16356155	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110843, intron 29 of 38)	intron (NM_001110843, intron 29 of 38)	-197440.0	NM_001289460	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-82285463-2	chr2	82285363	82285563	+	597.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	106739.0	NR_152125	228116.0	Mm.246588	NR_152125	ENSMUSG00000087061	A130030D18Rik	Gm558	RIKEN cDNA A130030D18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-40968786-4	chr13	40968694	40968894	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155347, intron 1 of 4)	LTR41|LTR|ERVL	-32216.0	NM_026550	68083.0	Mm.24789	NM_026550	ENSMUSG00000038683	Pak1ip1	5830431I15Rik|5930415H02Rik|AA419825|AI314040|AW556169|Gdpd1|PIP1	PAK1 interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123995736-2	chr5	123995636	123995836	+	580.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145070, intron 8 of 31)	intron (NM_145070, intron 8 of 31)	-1116.0	NR_105999	102465625.0		NR_105999	ENSMUSG00000098454	Mir7032	Gm27309|mmu-mir-7032	microRNA 7032	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-6407420-2	chr15	6407320	6407520	+	559.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037905, intron 1 of 13)	intron (NM_001037905, intron 1 of 13)	20672.0	NM_001310446	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-133206413-2	chr6	133206308	133206508	+	744.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPEY4_LTR|LTR|ERVK	-85808.0	NM_027784	232426.0	Mm.158689	NM_027784	ENSMUSG00000055594	5530400C23Rik	GRP	RIKEN cDNA 5530400C23 gene	protein-coding	0.650107377690393	1.86905156624627	0.688663826636818	0.903163336369268	1.9360880676942	1.98107469822221	0.692673197725797	0.676947805264947	1.05310296481023	0.495210625325055	0.935871639606743
Merged-chr12-82220894-3	chr12	82220798	82220998	+	857.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167983, intron 1 of 23)	intron (NM_001167983, intron 1 of 23)	50882.0	NM_001167983	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-12163441-2	chr18	12163341	12163541	+	717.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	U4|snRNA|snRNA	-5289.0	NM_029623	76482.0	Mm.196596	NM_029623	ENSMUSG00000024410	3110002H16Rik	2400010D15Rik|Mic-1|Mic1|Rmc1|Wdr98	RIKEN cDNA 3110002H16 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-136678858-3	chr2	136678748	136678948	+	890.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-34602.0	NM_011428	20614.0	Mm.45953	NM_011428	ENSMUSG00000027273	Snap25	Bdr|GENA70|SNAP-25|SUP|sp	synaptosomal-associated protein 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-12220749-2	chr12	12220649	12220849	+	737.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CATG)n|Simple_repeat|Simple_repeat	-41390.0	NM_029758	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	0.838140257030082	1.3235394133529	0.675082377160551	1.47765961960882	0.845197670917811	2.1805931967252	0.678838307777931	1.07434290883902	0.815840881789876	0.561266917606099	0.960362415684079
Merged-chr8-122145044-3	chr8	122144929	122145129	+	776.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-137112.0	NM_009569	22761.0	Mm.3105	NM_009569	ENSMUSG00000049577	Zfpm1	FOG|Fog1	zinc finger protein, multitype 1	protein-coding	-0.423326305860828	-0.56142029843556	-0.565471533787383	-0.568602203744459	-0.419211686805391	-0.560508101240307	-0.564577374208391	0.267994805199717	2.67498211568403	0.29919401220324	1
Merged-chr16-36827879-1	chr16	36827779	36827979	+	962.0	f0_balb.idr	promoter-TSS (NM_177128)	promoter-TSS (NM_177128)	380.0	NM_001113401	106389.0	Mm.432078	NM_134111	ENSMUSG00000022838	Eaf2	AW048865|FESTA-L|FESTA-S|Festa|Traits|U19	ELL associated factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-5760478-3	chr18	5760358	5760558	+	905.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360982, intron 4 of 7)	intron (NM_001360982, intron 4 of 7)	167811.0	NM_001360981	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	-1.39239040096365	-1.50706362993767	-1.51637061241093	-1.52401564492204	-1.25712099376264	-1.5050467680107	-1.51426371558223	-1.52264718775774	0.640753741356348	0.855918148133186	1
Merged-chr15-86137826-3	chr15	86137759	86137959	+	690.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001205353)	TTS (NM_001205353)	-47869.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	1.17453340630333	1.64411645483215	0.686700622905439	0.671979190555548	1.63044655850008	0.709306388245202	2.21368302278776	0.674579973050977	1.19073970484814	0.431828677600694	0.904679012727573
Merged-chr10-79958323-4	chr10	79958226	79958426	+	996.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 3 of 4)	intron (NR_038088, intron 3 of 4)	-1826.0	NM_175450	216156.0	Mm.35828	NM_175450	ENSMUSG00000035754	Wdr18	2310012I10Rik|AU044733|AW122032	WD repeat domain 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-21760122-2	chr5	21760022	21760222	+	881.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009584, intron 15 of 16)	intron (NM_009584, intron 15 of 16)	22962.0	NM_028431	73078.0	Mm.301655	NM_028431	ENSMUSG00000029017	Pmpcb	3110004O18Rik|MPP11|MPPB|MPPP52	peptidase (mitochondrial processing) beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-72109197-3	chr7	72109102	72109302	+	943.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024703, intron 19 of 22)	intron (NM_001024703, intron 19 of 22)	-147184.0	NR_126483	102640608.0	Mm.399138	NR_126483	ENSMUSG00000108480	Gm36633	-	predicted gene, 36633	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-90795525-4	chr8	90795405	90795605	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33330.0	NM_177224	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	4.54259038605722	3.67884226580331	4.80639405131411	4.36628873268997	5.19383657495801	4.3034835103506	5.22489131437521	4.28026738792319	0.522318359770777	0.20876925732717	0.698238305912857
Merged-chr6-29621065-2	chr6	29620965	29621165	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11216.0	NM_001347079	320938.0	Mm.276381	NM_177296	ENSMUSG00000012535	Tnpo3	5730544L10Rik|C430013M08Rik|C81142|D6Ertd313e|Trn-SR|mKIAA4133	transportin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-24464595-4	chr13	24464508	24464708	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111110, intron 14 of 16)	RMER5|LTR|ERV1	49486.0	NM_001284520	12763.0	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-17531059-2	chr12	17530980	17531180	+	852.5	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13793.0	NM_013614	18263.0	Mm.34102	NM_013614	ENSMUSG00000011179	Odc1	ODC	ornithine decarboxylase, structural 1	protein-coding	1.53819389710187	1.53314554324821	1.58687932136449	1.01616816235503	0.98273955234103	1.07533046088352	0.840573623485147	1.54532759777561	-1.17853635081484	0.365839308298614	0.861036332257394
Merged-chr12-54862917-4	chr12	54862797	54862997	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007688)	promoter-TSS (NM_007688)	-20.0	NM_007688	12632.0	Mm.276826	NM_007688	ENSMUSG00000062929	Cfl2	-	cofilin 2, muscle	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-66536618-4	chr15	66536507	66536707	+	878.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172514, intron 7 of 9)	L1MC3|LINE|L1	24439.0	NM_172514	213068.0	Mm.132299	NM_172514	ENSMUSG00000036944	Tmem71	AI661017|E430024D12	transmembrane protein 71	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-21687525-4	chr16	21687431	21687631	+	890.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001881, intron 1 of 1)	Lx8|LINE|L1	7134.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-111350959-3	chr4	111350861	111351061	+	791.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001284190, intron 6 of 12)	intron (NM_001284190, intron 6 of 12)	-64045.0	NR_033793	67621.0	Mm.45533	NM_026279	ENSMUSG00000028545	Bend5	2310026E23Rik	BEN domain containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-89196083-4	chr15	89195967	89196167	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027081, intron 1 of 19)	CpG	407.0	NM_027081	69440.0	Mm.482128	NM_027081	ENSMUSG00000015377	Dennd6b	1700027J05Rik|AI414881|Fam116b	DENN/MADD domain containing 6B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-85304670-1	chr1	85304570	85304770	+	801.0	f1_balb.idr	Intergenic	Intergenic	-34104.0	NM_001037909	620078.0	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik	RIKEN cDNA C130026I21 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-12483224-2	chr4	12483124	12483324	+	972.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-311209.0	NM_026558	68099.0	Mm.25340	NM_026558	ENSMUSG00000028218	Fam92a	6720467C03Rik|Fam92a1	family with sequence similarity 92, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-34602102-4	chr19	34601999	34602199	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001101605)	promoter-TSS (NM_001101605)	-131.0	NM_001101605	667373.0	Mm.371956	NM_001101605	ENSMUSG00000079339	Ifit1bl1	Gm14446|Ifit1c	interferon induced protein with tetratricpeptide repeats 1B like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44108060-2	chr9	44107960	44108160	+	861.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001040631, intron 2 of 2)	intron (NM_001040631, intron 2 of 2)	751.0	NM_001190319	235312.0	Mm.227110	NM_145613	ENSMUSG00000079592	C1qtnf5	Ctrp5	C1q and tumor necrosis factor related protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10290570-7	chr19	10290445	10290645	+	994.714294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198114, intron 1 of 19)	intron (NM_198114, intron 1 of 19)	14332.0	NM_198114	269060.0	Mm.329718	NM_198114	ENSMUSG00000035735	Dagla	Nsddr	diacylglycerol lipase, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-25987226-2	chr4	25987126	25987326	+	716.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-187223.0	NM_010243	14348.0	Mm.39101	NM_010243	ENSMUSG00000055373	Fut9	AI746471|AU067636|mFUT9|mFuc-TIX	fucosyltransferase 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-64883281-4	chr14	64883212	64883412	+	950.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177338, intron 4 of 9)	L1MC1|LINE|L1	66545.0	NM_177338	219150.0	Mm.344074	NM_177338	ENSMUSG00000021972	Hmbox1	AI451877|AI604847|F830020C16Rik	homeobox containing 1	protein-coding	1.99250681726802	1.22369030785997	2.35665489359663	1.87399128590907	2.10182572960058	1.22906916369923	2.06864699930534	2.21065795235415	0.0838839058594389	0.937728348120849	0.998431161219273
Merged-chr9-95567176-4	chr9	95567073	95567273	+	923.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7356.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-106197706-2	chr9	106197646	106197846	+	830.833374	f1_balb.idr|f1_c57bl6.idr	exon (NM_026447, exon 3 of 10)	exon (NM_026447, exon 3 of 10)	1193.0	NM_198931	67905.0	Mm.23018	NM_026447	ENSMUSG00000020253	Ppm1m	2810423O19Rik|AW610647|C77250|PP2Ceta	protein phosphatase 1M	protein-coding	-2.18308165884198	-2.15547475440471	-2.16382331017202	-2.1706810624505	-2.18114370519566	-2.15366558754311	-2.03057248461154	-2.16945352807143	0.759018020146679	0.829933115115583	1
Merged-chr17-13682808-4	chr17	13682704	13682904	+	970.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-77737.0	NR_151731	17356.0	Mm.59167	NM_010806	ENSMUSG00000068036	Afdn	5033403D15Rik|AF6|Af-6|Afadin|Gm314|I-afadin|Mllt4|S-afadin	afadin, adherens junction formation factor	protein-coding	1.00659702678237	1.40286188659319	1.08924735751439	0.728705509718185	1.24025414839435	0.750688834743598	1.46887787301984	1.19570402545716	0.492183993078624	0.726162559796613	0.998431161219273
Merged-chr14-63103228-4	chr14	63103129	63103329	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19233.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127603170-2	chr10	127603064	127603264	+	993.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 6 of 88)	intron (NM_008512, intron 6 of 88)	17984.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	2.28200442414083	1.27611839931288	2.20114763174581	2.03308825617464	1.56834679139277	2.0497291057841	2.10730054422468	2.04336585381693	-0.151852752513999	0.878693436693488	0.998431161219273
Merged-chr11-5732880-4	chr11	5732810	5733010	+	972.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361588, intron 1 of 6)	intron (NM_001361588, intron 1 of 6)	8266.0	NM_001361590	72046.0	Mm.271657	NM_178623	ENSMUSG00000049680	Urgcp	2010005J08Rik|9130001I21Rik|AW060359|Urg4|mKIAA1507	upregulator of cell proliferation	protein-coding	0.596389796293284	0.441581519064539	0.858641755134098	1.88051548312859	0.40001711358413	0.444716982388265	0.430593015697313	1.44731078139867	-1.16099966815166	0.493971769930909	0.935679785535167
Merged-chr15-77767533-2	chr15	77767433	77767633	+	746.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_022410, exon 32 of 41)	exon (NM_022410, exon 32 of 41)	-10523.0	NM_001357895	239552.0	Mm.125650	NM_001081970	ENSMUSG00000056656	Apol8	9830006J20Rik|APOL-II|Apol2	apolipoprotein L 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-75063641-4	chr8	75063539	75063739	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001136259, intron 12 of 15)	intron (NM_001136259, intron 12 of 15)	29953.0	NM_011622	21968.0	Mm.1967	NM_011622	ENSMUSG00000042870	Tom1	-	target of myb1 trafficking protein	protein-coding	5.35684590488742	6.00584190374727	5.88632380113837	5.0159452416756	5.34650241318697	5.5120783277487	5.66806145535279	4.96476402631637	-0.252515527831377	0.410736545570035	0.894256659801134
Merged-chr11-54755672-3	chr11	54755487	54755687	+	935.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178626, intron 2 of 5)	intron (NM_178626, intron 2 of 5)	32116.0	NM_178626	72729.0	Mm.29476	NM_178626	ENSMUSG00000052298	Cdc42se2	2810404F18Rik|AA408783|AA536669|SPEC2	CDC42 small effector 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-155235128-4	chr4	155235010	155235210	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12575.0	NM_001357191	20481.0	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	4.28890190739535	4.37336077303285	3.33102004642223	3.82623408114304	4.15281745769083	3.94619816924053	3.65312121373406	4.24931488453942	0.00693297320336691	0.988161950894273	0.998431161219273
Merged-chr15-91703210-3	chr15	91703115	91703315	+	855.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025730, intron 11 of 50)	intron (NM_025730, intron 11 of 50)	29991.0	NM_025730	66725.0	Mm.37558	NM_025730	ENSMUSG00000036273	Lrrk2	4921513O20Rik|9330188B09Rik|AW561911|D630001M17Rik|Gm927|cI-46	leucine-rich repeat kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-110245164-2	chr9	110245064	110245264	+	831.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001166273, exon 1 of 5)	5' UTR (NM_001166273, exon 1 of 5)	1381.0	NM_013884	29873.0	Mm.38496	NM_013884	ENSMUSG00000032482	Cspg5	Caleb|Ngc	chondroitin sulfate proteoglycan 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-105410886-1	chr5	105410786	105410986	+	769.0	f1_balb.idr	Intergenic	Intergenic	-4889.0	NM_001033550	433926.0	Mm.439781	NM_001033550	ENSMUSG00000070639	Lrrc8b	2210408K08Rik|R75581|Ta-lrrp|mKIAA0231	leucine rich repeat containing 8 family, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-92037251-3	chr1	92037148	92037348	+	648.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207225, intron 3 of 26)	intron (NM_207225, intron 3 of 26)	143093.0	NM_207225	208727.0	Mm.318567	NM_207225	ENSMUSG00000026313	Hdac4	4932408F19Rik|HD4	histone deacetylase 4	protein-coding	-1.50673248549637	-1.16205913549242	-1.48386929748026	-1.49201070578052	-1.50443177948353	-1.47181021981684	-1.48162560429726	-1.3346039491723	-0.844373057410493	0.807363327296117	1
Merged-chr1-7053577-3	chr1	7053466	7053666	+	840.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35354.0	NM_183028	319263.0	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-41194890-1	chr12	41194790	41194990	+	547.0	f0_balb.idr	intron (NM_053122, intron 4 of 6)	intron (NM_053122, intron 4 of 6)	170800.0	NM_053122	93757.0	Mm.363813	NM_053122	ENSMUSG00000056899	Immp2l	AI853880|IMP2|Tg(HLA-A/H2-D)2Enge	IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-112490962-3	chr6	112490864	112491064	+	893.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1139.0	NM_001081147	18430.0	Mm.333310	NM_001081147	ENSMUSG00000049112	Oxtr	OTR	oxytocin receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-57890640-4	chr15	57890586	57890786	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024207, intron 1 of 7)	L2a|LINE|L2	1732.0	NM_024207	67819.0	Mm.289387	NM_024207	ENSMUSG00000022365	Derl1	1110021N07Rik|AI195141|AW551338|Derlin-1	Der1-like domain family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-96496882-3	chr10	96496770	96496970	+	946.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-120131.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-106220574-3	chr1	106220448	106220648	+	616.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133821, intron 1 of 16)	RSINE1|SINE|B4	48679.0	NM_133821	98432.0	Mm.24115	NM_133821	ENSMUSG00000044340	Phlpp1	AI836256|Phlpp|Plekhe1|SCOP|mKIAA0606	PH domain and leucine rich repeat protein phosphatase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-9993217-4	chr19	9993134	9993334	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011913, exon 3 of 12)	exon (NM_011913, exon 3 of 12)	8399.0	NM_011913	24115.0	Mm.31577	NM_011913	ENSMUSG00000037418	Best1	Bmd|Vmd2|mBest1	bestrophin 1	protein-coding	3.89853896342219	3.43777914551935	3.77489317667812	2.80024794825987	2.99137615084022	4.10623909937312	3.25195724914085	2.16422926039123	-0.36831577396006	0.569367119599757	0.962718661854691
Merged-chr17-5556577-2	chr17	5556477	5556677	+	699.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	63977.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-31234208-4	chr16	31234117	31234317	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER112|DNA|hAT-Charlie	-32979.0	NM_030138	78618.0	Mm.274646	NM_030138	ENSMUSG00000049076	Acap2	4832442G16|9530039J15Rik|CNT-B2|Centb2|mKIAA0041	ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-68714505-4	chr10	68714387	68714587	+	742.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR12B|LTR|ERVK	-9259.0	NM_177794	327766.0	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-11705187-2	chr16	11705087	11705287	+	871.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028964, intron 18 of 20)	L2b|LINE|L2	-74515.0	NR_126430	73761.0	Mm.39183	NR_126430		4833415N18Rik	-	RIKEN cDNA 4833415N18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28368674-2	chr7	28368574	28368774	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_138752, intron 6 of 18)	intron (NM_138752, intron 6 of 18)	3988.0	NM_138752	101497.0	Mm.235700	NM_138752	ENSMUSG00000037552	Plekhg2	AI194308|Clg|Cslg	pleckstrin homology domain containing, family G (with RhoGef domain) member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-86833318-3	chr12	86833228	86833428	+	879.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	51486.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-63250256-3	chr13	63250158	63250358	+	751.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289926, intron 13 of 15)	intron (NM_001289926, intron 13 of 15)	10229.0	NR_110521	72061.0	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135616234-4	chr5	135616153	135616353	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16401.0	NM_001357037	215160.0	Mm.295438	NM_031398	ENSMUSG00000039917	Rhbdd2	0610011L13Rik|AI480532|Rhbdl7|Usmg1	rhomboid domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-26234905-4	chr13	26234816	26235016	+	996.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	77490.0	NR_045933	73576.0	Mm.45473	NR_045933	ENSMUSG00000084811	1700092E19Rik	-	RIKEN cDNA 1700092E19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-38941203-4	chr6	38941099	38941299	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 1 of 12)	intron (NM_011539, intron 1 of 12)	22213.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-70969207-4	chr12	70969114	70969314	+	919.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5409.0	NM_001310595	19167.0	Mm.296338	NM_011184	ENSMUSG00000060073	Psma3	Lmpc8	proteasome (prosome, macropain) subunit, alpha type 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-40722973-4	chr13	40722896	40723096	+	940.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122948, intron 4 of 6)	CpG	-4812.0	NR_125899	102633805.0		NR_125899	ENSMUSG00000097752	Gm26688	Tfap2a-as1	predicted gene, 26688	ncRNA	3.33290354549809	3.50573231042829	3.46572537428574	2.5981837776525	3.35966879774224	3.16528966503328	3.25172952164174	1.8917951767156	-0.393706810896612	0.559026678513574	0.960321604678676
Merged-chr7-127016140-3	chr7	127016038	127016238	+	828.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030240, intron 2 of 2)	intron (NM_030240, intron 2 of 2)	1214.0	NM_030240	67278.0	Mm.345385	NM_030240	ENSMUSG00000107068	Pagr1a	2900092E17Rik|C77040|PA1|PAGR1	PAXIP1 associated glutamate rich protein 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-3113783-2	chr17	3113683	3113883	+	700.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1189.0	NM_134123	106583.0	Mm.124373	NM_134123	ENSMUSG00000046201	Scaf8	A630086M08Rik|A930036P18Rik|AA408306|AI447644|AI448652|AU015035|Rbm16|mKIAA1116	SR-related CTD-associated factor 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-36877246-2	chr16	36877146	36877346	+	609.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-2420.0	NM_134111	106389.0	Mm.432078	NM_134111	ENSMUSG00000022838	Eaf2	AW048865|FESTA-L|FESTA-S|Festa|Traits|U19	ELL associated factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-43595999-2	chr13	43595899	43596099	+	723.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19798.0	NM_183204	328234.0	Mm.40588	NM_183204	ENSMUSG00000044164	Rnf182	C630023L15Rik	ring finger protein 182	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-65360199-1	chr3	65360099	65360299	+	544.0	f1_balb.idr	intron (NM_001357358, intron 11 of 13)	MIRc|SINE|MIR	-10770.0	NR_040390	319798.0	Mm.445698	NR_040390		A730090N16Rik	-	RIKEN cDNA A730090N16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-64592485-4	chr17	64592379	64592579	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9170.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-88509242-4	chr5	88509133	88509333	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18664.0	NM_152839	16069.0	Mm.1192	NM_152839	ENSMUSG00000067149	Jchain	9530090F24Rik|AI323815|Igj|Jch	immunoglobulin joining chain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-100060614-4	chr15	100060525	100060725	+	898.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159361, intron 1 of 37)	intron (NM_001159361, intron 1 of 37)	21961.0	NM_001159361	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117214811-2	chr10	117214711	117214911	+	868.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_026570)	TTS (NM_026570)	9696.0	NM_026570	64050.0	Mm.233529	NM_026570	ENSMUSG00000020171	Yeats4	4930573H17Rik|B230215M10Rik|GAS41|NuBI-1	YEATS domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45276883-2	chr7	45276783	45276983	+	676.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5990.0	NM_001033176	76713.0	Mm.425445	NM_001033176	ENSMUSG00000070568	Slc6a21	1700039E15Rik|Gm19188	solute carrier family 6 member 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-90895489-2	chr5	90895389	90895589	+	856.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3C|LINE|L1	4244.0	NM_008176	14825.0	Mm.21013	NM_008176	ENSMUSG00000029380	Cxcl1	Fsp|Gro1|KC|Mgsa|N51|Scyb1|gro	chemokine (C-X-C motif) ligand 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-95963243-4	chr15	95963146	95963346	+	971.224976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 17 of 19)	MIRc|SINE|MIR	116307.0	NR_126493	402773.0	Mm.210567	NM_001033483	ENSMUSG00000078925	D030018L15Rik	-	nuclear receptor coactivator 2 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-51662844-4	chr3	51662750	51662950	+	973.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_174995, intron 1 of 4)	intron (NM_174995, intron 1 of 4)	1671.0	NM_001310482	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-70990608-4	chr17	70990548	70990748	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023402)	promoter-TSS (NM_023402)	-132.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	6.08908035185839	5.50751118530097	6.17201873686749	5.39292278995045	5.69925583401256	4.93954212548679	5.56396518282538	6.50840692063784	-0.0400458794901157	0.902417863440053	0.998431161219273
Merged-chr2-19300888-2	chr2	19300782	19300982	+	708.0	f0_balb.idr|f0_c57.idr	intron (NM_001271565, intron 17 of 17)	intron (NM_001271565, intron 17 of 17)	-43435.0	NR_126563	108871.0	Mm.107666	NR_126563		4930447M23Rik	-	RIKEN cDNA 4930447M23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-111079863-3	chr7	111079770	111079970	+	843.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013507, intron 4 of 21)	intron (NM_013507, intron 4 of 21)	3160.0	NM_001040131	13690.0	Mm.185453	NM_013507	ENSMUSG00000005610	Eif4g2	DAP-5|E130105L11Rik|Nat1|Natm1|p97	eukaryotic translation initiation factor 4, gamma 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-33352158-4	chr5	33352058	33352258	+	997.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021500, intron 1 of 8)	ID_B1|SINE|B4	16586.0	NM_021500	59003.0	Mm.138617	NM_021500	ENSMUSG00000079562	Maea	1110030D19Rik|EMP|Gid9	macrophage erythroblast attacher	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75547541-1	chr11	75547441	75547641	+	627.0	f1_c57bl6.idr	intron (NM_001199284, intron 5 of 13)	intron (NM_001199284, intron 5 of 13)	-3888.0	NR_039553	100628624.0		NR_039553	ENSMUSG00000093100	Mir3971	mmu-mir-3971|mu-mir-3971	microRNA 3971	ncRNA	-1.56355737717652	-1.81244775989375	-1.82128546162293	-1.82854501295842	-1.83962066705452	-1.81053259306168	-1.81928479966835	-1.82724555674025	-1.28500227969968	0.715751224811686	1
Merged-chr2-32306023-2	chr2	32305923	32306123	+	557.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_133852, exon 25 of 27)	exon (NM_133852, exon 25 of 27)	-12242.0	NR_128563	104795665.0		NR_128563	ENSMUSG00000092765	Gm23363	Mir3154|mir-3154|mmu-mir-3154	predicted gene, 23363	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83580987-4	chr11	83580891	83581091	+	798.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1070.0	NR_036453	100504464.0	Mm.341706	NR_036452	ENSMUSG00000051832	E230016K23Rik	-	RIKEN cDNA E230016K23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-34849794-2	chr18	34849694	34849894	+	769.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9205.0	NM_144865	225362.0	Mm.293588	NM_144865	ENSMUSG00000038555	Reep2	-	receptor accessory protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-72853407-4	chr2	72853307	72853507	+	882.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39690.0	NR_102349	76218.0	Mm.75260	NR_102348	ENSMUSG00000085427	6430710C18Rik	5033406J01Rik	RIKEN cDNA 6430710C18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67633302-4	chr10	67633206	67633406	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61347.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-80260836-4	chr15	80260746	80260946	+	839.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_175109, exon 4 of 4)	3' UTR (NM_175109, exon 4 of 4)	3460.0	NM_175109	66538.0	Mm.39485	NM_175109	ENSMUSG00000051518	Rps19bp1	2510038A11Rik|AI604923|S19BP	ribosomal protein S19 binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-90710683-1	chr6	90710583	90710783	+	719.0	f0_balb.idr	intron (NM_001356440, intron 1 of 13)	intron (NM_001356440, intron 1 of 13)	5846.0	NM_001134383	232227.0	Mm.196943	NM_182784	ENSMUSG00000034312	Iqsec1	AW561907|BC026481|BRAG2|D6Ertd349e|cI-43	IQ motif and Sec7 domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46573256-4	chr19	46573135	46573335	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019718)	promoter-TSS (NM_019718)	-53.0	NM_019718	56350.0	Mm.22085	NM_019718	ENSMUSG00000025035	Arl3	-	ADP-ribosylation factor-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-47042080-2	chr7	47041980	47042180	+	601.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-8560.0	NM_026436	67893.0	Mm.27338	NM_026436	ENSMUSG00000010307	Tmem86a	1810054O13Rik|AI414959|AW742698	transmembrane protein 86A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90497132-2	chr2	90497031	90497231	+	602.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	-17957.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-106240703-1	chr7	106240603	106240803	+	577.333313	f0_balb.idr	Intergenic	RLTR13B2|LTR|ERVK	-25363.0	NM_029000	74558.0	Mm.458429	NM_029000	ENSMUSG00000045868	Gvin1	9130002C22Rik|9830104F22Rik|Iigs1|VLIG|VLIG-1	GTPase, very large interferon inducible 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-56885405-4	chr14	56885294	56885494	+	983.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1209.0	NM_177627	76007.0	Mm.31417	NM_029498	ENSMUSG00000021945	Zmym2	5830413P05Rik|FIM|MYM|RAMP|SCLL|Zfp198|Znf198	zinc finger, MYM-type 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-53435388-3	chr10	53435257	53435457	+	985.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25475.0	NR_152767	102640074.0	Mm.412957	NR_152767		Gm36229	-	predicted gene, 36229	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-105900892-4	chr3	105900784	105900984	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027025, intron 1 of 6)	intron (NM_027025, intron 1 of 6)	-3537.0	NM_009631	11542.0	Mm.235024	NM_009631	ENSMUSG00000000562	Adora3	A3AR|A3R|AA3R|ARA3|Gpcr2	adenosine A3 receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3811819-2	chr12	3811719	3811919	+	615.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271753, intron 1 of 22)	intron (NM_001271753, intron 1 of 22)	4659.0	NM_001271753	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-123248751-4	chr8	123248634	123248834	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028200, intron 5 of 14)	intron (NM_028200, intron 5 of 14)	-5461.0	NM_020497	57247.0	Mm.379084	NM_020497	ENSMUSG00000001065	Zfp276	AW048709|D8Ertd370e|D8Ertd377e|Znf276	zinc finger protein (C2H2 type) 276	protein-coding	3.88297259850906	3.51958885715077	2.89292582395203	3.46299952317594	2.68073156730765	3.14392368500276	2.91636847304628	3.85054770606071	-0.415097404417196	0.493885664458197	0.935679785535167
Merged-chr7-120865201-3	chr7	120865132	120865332	+	808.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001267710, intron 2 of 17)	intron (NM_001267710, intron 2 of 17)	14043.0	NM_001267711	13631.0	Mm.25997	NM_007908	ENSMUSG00000035064	Eef2k	C86191|eEF-2K	eukaryotic elongation factor-2 kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191956554-2	chr1	191956454	191956654	+	771.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20816.0	NM_001177900	74023.0	Mm.274393	NM_023727	ENSMUSG00000049353	Rd3	3322402L07Rik|rd-3|rd3	retinal degeneration 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-90229806-2	chr16	90229706	90229906	+	582.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_178923, exon 20 of 20)	exon (NM_178923, exon 20 of 20)	9064.0	NM_011434	20655.0	Mm.276325	NM_011434	ENSMUSG00000022982	Sod1	B430204E11Rik|Cu/Zn-SOD|CuZnSOD|Ipo-1|Ipo1|SODC|Sod-1	superoxide dismutase 1, soluble	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-155058734-4	chr1	155058624	155058824	+	932.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24540.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-54590139-4	chr13	54590016	54590216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025933)	promoter-TSS (NM_025933)	-42.0	NM_178605	28126.0	Mm.439993	NM_178605	ENSMUSG00000025869	Nop16	AA409471|D13Wsu177e	NOP16 nucleolar protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4212976-4	chr19	4212909	4213109	+	947.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1229.0	NR_132308	105948585.0	Mm.32518	NR_132308		Gm45928	Clcf1-pold4	predicted gene, 45928	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-36324884-4	chr13	36324780	36324980	+	889.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039189, intron 3 of 5)	intron (NM_001039189, intron 3 of 5)	207237.0	NM_001039189	69955.0	Mm.70690	NM_024274	ENSMUSG00000021420	Fars2	Fars1|pheRS	phenylalanine-tRNA synthetase 2 (mitochondrial)	protein-coding	-1.50578006401468	-1.47341050667617	-1.17515363242603	-1.49124015727368	-1.50350778094084	-1.47128922826211	-1.3269605056278	-1.48980085267657	-0.800720836253042	0.817773358996722	1
Merged-chr6-4904217-3	chr6	4904113	4904313	+	929.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181595, intron 1 of 15)	intron (NM_181595, intron 1 of 15)	893.0	NM_181595	243725.0	Mm.332901	NM_181595	ENSMUSG00000032827	Ppp1r9a	2810430P21Rik|4930518N04Rik|5330407E15|A230094E16Rik|BB181831|NRB|mKIAA1222|neurabin-I	protein phosphatase 1, regulatory (inhibitor) subunit 9A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-150519653-3	chr5	150519510	150519710	+	807.200012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1451.0	NM_001159693	545824.0	Mm.380068	NM_001159693	ENSMUSG00000056586	Zar1l	XM_359419	zygote arrest 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-108255463-2	chr5	108255363	108255563	+	768.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13434.0	NM_026106	13486.0	Mm.303534	NM_026106	ENSMUSG00000029265	Dr1	1700121L09Rik|Dr1l|NC2|NC2beta	down-regulator of transcription 1	protein-coding	-1.13146769101922	-1.10460487238646	-1.11735372523027	-1.12713099301154	-1.13082009585647	-0.300663969208598	-1.11446766439333	-1.12595147812057	3.06518455575839	0.353555291099784	1
Merged-chr11-115707439-4	chr11	115707354	115707554	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008163, intron 1 of 5)	intron (NM_008163, intron 1 of 5)	1143.0	NM_008163	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-31735302-4	chr11	31735194	31735394	+	732.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63432.0	NM_001024919	69556.0	Mm.34183	NM_001024919	ENSMUSG00000044502	Bod1	2310022M17Rik|BOD2.1|Fam44b	biorientation of chromosomes in cell division 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-21531611-2	chr17	21531511	21531711	+	821.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_131123, intron 2 of 2)	intron (NR_131123, intron 2 of 2)	-3928.0	NM_144515	22710.0	Mm.296100	NM_144515	ENSMUSG00000051341	Zfp52	KRAB11|Zfp-52|Zfp76|mszf23-2|mszf24|mszf34|mszf75|zfec29	zinc finger protein 52	protein-coding	0.342862264768413	0.192605295783603	0.182785300581376	0.549050505324701	0.635915888388309	0.194795286443064	1.51095381647561	0.176439906073774	2.36946342618159	0.207847860289891	1
Merged-chr16-94038473-2	chr16	94038357	94038557	+	713.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29620.0	NM_019500	56173.0	Mm.328716	NM_019500	ENSMUSG00000047109	Cldn14	AI851731	claudin 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117824147-2	chr11	117824047	117824247	+	991.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271729, intron 2 of 5)	intron (NM_001271729, intron 2 of 5)	-1772.0	NM_027827	71562.0	Mm.273958	NM_027827	ENSMUSG00000017718	Afmid	9030621K19Rik|Ammd|FKF|KFA|Kf|formylase	arylformamidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-63606462-2	chr14	63606362	63606562	+	929.916626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173393)	promoter-TSS (NM_173393)	-68.0	NM_173393	219149.0	Mm.32071	NM_173393	ENSMUSG00000035067	Xkr6	2700008G24Rik|BC024502|Xrg6	X-linked Kx blood group related 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-31370241-3	chr3	31370149	31370349	+	784.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59930.0	NM_172861	241919.0	Mm.285366	NM_172861	ENSMUSG00000069072	Slc7a14	A930013N06|BC061928	solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-21374263-2	chr19	21374163	21374363	+	556.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	98398.0	NM_010266	14544.0	Mm.45054	NM_010266	ENSMUSG00000058624	Gda	AU015411|AW047581|GAH	guanine deaminase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-23819273-2	chr17	23819173	23819373	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_175229, exon 10 of 14)	exon (NM_175229, exon 10 of 14)	-4018.0	NR_039586	100628593.0		NR_039586	ENSMUSG00000092981	Mir5125	mmu-mir-5125|mu-mir-5125	microRNA 5125	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-22018157-2	chr13	22018057	22018257	+	795.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8416.0	NM_019429	54373.0	Mm.32043	NM_019429	ENSMUSG00000006179	Prss16	AI448615|TSSP	protease, serine 16 (thymus)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-15887891-3	chr16	15887813	15888013	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007679, exon 1 of 1)	exon (NM_007679, exon 1 of 1)	627.0	NM_007679	12609.0	Mm.347407	NM_007679	ENSMUSG00000071637	Cebpd	c/EBPdelta	CCAAT/enhancer binding protein (C/EBP), delta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-142083373-2	chr4	142083273	142083473	+	656.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027137)	promoter-TSS (NR_027137)	-925.0	NR_027137	100038693.0	Mm.402714	NR_027137	ENSMUSG00000073728	Tmem51os1	Gm10565|Tmem51as1	Tmem51 opposite strand 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24867604-1	chr17	24867504	24867704	+	635.0	f1_balb.idr	Intergenic	Intergenic	-11166.0	NM_008340	16005.0	Mm.3135	NM_008340	ENSMUSG00000046070	Igfals	ALS|Albs|mKIAA4111	insulin-like growth factor binding protein, acid labile subunit	protein-coding	-0.386879804955071	-0.372440418978237	-0.377156140561096	-0.380804232163413	0.120747690098653	-0.371379363784859	0.433367946343468	-0.380166294541449	3.75245914528389	0.144664511802582	1
Merged-chr2-84634400-4	chr2	84634359	84634559	+	901.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007615, intron 1 of 19)	(TC)n|Simple_repeat|Simple_repeat	15021.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-45870988-2	chr13	45870888	45871088	+	767.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199304, intron 2 of 6)	MER20|DNA|hAT-Charlie	94003.0	NM_001199304	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166771603-5	chr2	166771482	166771682	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22185.0	NM_023815	76367.0	Mm.330796	NM_023815	ENSMUSG00000042854	Trp53rkb	2810408M09Rik|4933401B08Rik|5630401H01Rik|Nori-2|PRPK|Tp53rk|Trp53rk|Trp53tk|mNori-2p	transformation related protein 53 regulating kinase B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-24850159-2	chr2	24850059	24850259	+	562.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001109686, intron 8 of 25)	intron (NM_001109686, intron 8 of 25)	69450.0	NM_172545	77683.0	Mm.24176	NM_172545	ENSMUSG00000036893	Ehmt1	9230102N17Rik|D330003E03|Eu-HMTase1|GLP|GLP1|KMT1D|mKIAA1876	euchromatic histone methyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-178407019-2	chr1	178406919	178407119	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026626, intron 1 of 6)	intron (NM_026626, intron 1 of 6)	1001.0	NM_026626	68226.0	Mm.252132	NM_026626	ENSMUSG00000026495	Efcab2	1700073K01Rik|D830011E08Rik	EF-hand calcium binding domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46336512-4	chr8	46336409	46336609	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41838.0	NM_173789	234219.0	Mm.145631	NM_173789	ENSMUSG00000047171	Helt	A830086M02|Hesl|Heslike|Mgn|megane	helt bHLH transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-8638895-4	chr12	8638790	8638990	+	994.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35244.0	NM_001160221	80913.0	Mm.341243	NM_030723	ENSMUSG00000020594	Pum2	5730503J23Rik|Pumm2	pumilio RNA-binding family member 2	protein-coding	3.71930410714618	3.41367291177954	3.88898270636924	4.07926249432678	3.86200436428798	3.54566802666879	4.04670072821216	4.0448513783991	0.131195795072671	0.78086635542835	0.998431161219273
Merged-chr9-55255184-4	chr9	55255079	55255279	+	975.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_032002, intron 3 of 7)	LTR37-int|LTR|ERV1	28446.0	NM_032002	83961.0	Mm.443874	NM_032002	ENSMUSG00000032311	Nrg4	AI552600	neuregulin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101466194-4	chr11	101466099	101466299	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_012037)	promoter-TSS (NM_012037)	0.0	NM_012037	26949.0	Mm.29210	NM_012037	ENSMUSG00000034993	Vat1	VAT-1	vesicle amine transport 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-80791949-5	chr12	80791831	80792031	+	826.93335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001242419, intron 1 of 6)	intron (NM_001242419, intron 1 of 6)	1399.0	NM_001242419	217684.0	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-118002281-2	chr5	118002181	118002381	+	587.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346588, intron 11 of 11)	intron (NM_001346588, intron 11 of 11)	-25462.0	NR_151582	57816.0	Mm.273285	NM_021344	ENSMUSG00000029359	Tesc	1010001A17Rik|2410011K10Rik|TE-1	tescalcin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-23803882-4	chr18	23803788	23803988	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153058)	promoter-TSS (NM_153058)	-82.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	6.7209296579994	7.22554398612945	7.41493834274315	6.80109174744997	7.06100583038346	6.8281652771371	7.52465109206283	6.45780431122547	-0.0474385967463112	0.834977753702634	0.998431161219273
Merged-chr14-73173267-2	chr14	73173167	73173367	+	807.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_134083, intron 10 of 14)	(TTTG)n|Simple_repeat|Simple_repeat	30482.0	NR_033185	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-66142372-2	chr12	66142272	66142472	+	595.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	142029.0	NM_001162933	238217.0	Mm.188575	NM_001162933	ENSMUSG00000060499	Rpl10l	EG238217	ribosomal protein L10-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-106134042-2	chr8	106133942	106134142	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_176838, intron 5 of 14)	intron (NM_176838, intron 5 of 14)	-1358.0	NR_040345	69771.0	Mm.393274	NR_040344		1810019D21Rik	-	RIKEN cDNA 1810019D21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-123344299-2	chr4	123344199	123344399	+	593.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F2|SINE|Alu	-1047.0	NM_007558	12163.0	Mm.439749	NM_007558	ENSMUSG00000032726	Bmp8a	Bmp7r1|OP-2|OP2	bone morphogenetic protein 8a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-42246035-6	chr13	42245932	42246132	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55444.0	NM_010104	13614.0	Mm.14543	NM_010104	ENSMUSG00000021367	Edn1	ET-1|PPET1|preproET	endothelin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-19666137-2	chr5	19666037	19666237	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001170746, intron 1 of 22)	intron (NM_001170746, intron 1 of 22)	-241381.0	NM_001170745	50791.0	Mm.332231	NM_015823	ENSMUSG00000040003	Magi2	AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705	membrane associated guanylate kinase, WW and PDZ domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-46360061-4	chr4	46359961	46360161	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MD2|LINE|L1	15867.0	NM_183298	110805.0	Mm.354634	NM_183298	ENSMUSG00000070990	Foxe1	Titf2	forkhead box E1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115252387-1	chr11	115252287	115252487	+	647.666687	f1_balb.idr	intron (NM_010350, intron 13 of 14)	intron (NM_010350, intron 13 of 14)	14856.0	NM_010350	14813.0	Mm.39090	NM_010350	ENSMUSG00000020734	Grin2c	GluN2C|NMDAR2C|NR2C	glutamate receptor, ionotropic, NMDA2C (epsilon 3)	protein-coding	1.92878740568232	1.27941872966503	2.11420231621205	2.31911348965113	2.08423411721063	3.09992634501122	3.55869074222142	1.21341535882336	1.67384618437972	0.0910731314410875	0.466697934665504
Merged-chr7-84151388-4	chr7	84151233	84151433	+	871.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_133722, exon 1 of 3)	exon (NM_133722, exon 1 of 3)	560.0	NM_133722	70178.0	Mm.23914	NM_133722	ENSMUSG00000038459	Abhd17c	2210412D01Rik|AL023007|Fam108c|Fam108c1	abhydrolase domain containing 17C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70749370-2	chr8	70749270	70749470	+	659.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001310465, exon 16 of 17)	exon (NM_001310465, exon 16 of 17)	-5309.0	NM_001328047	19339.0	Mm.5083	NM_009001	ENSMUSG00000031840	Rab3a	-	RAB3A, member RAS oncogene family	protein-coding	2.30540745873394	0.921851829044173	2.04532976514457	0.878673100206167	1.77978601989518	0.927134251988331	2.33321445344557	0.882069441887658	-0.16870960280805	0.941888199159118	0.998431161219273
Merged-chr18-26919097-2	chr18	26918997	26919197	+	895.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1164940.0	NM_001362334	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-32795894-4	chr12	32795771	32795971	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24464.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-32997876-4	chr5	32997744	32997944	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20972.0	NM_011738	22629.0	Mm.332314	NM_011738	ENSMUSG00000018965	Ywhah	-	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107268202-4	chr9	107268108	107268308	+	816.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316691, intron 1 of 7)	intron (NM_001316691, intron 1 of 7)	21188.0	NM_001316691	102626.0	Mm.222612	NM_178907	ENSMUSG00000032577	Mapkapk3	3PK|AI874665|MAPKAP-K3|MAPKAP3|MK-3|MK3|MapkKapk3	mitogen-activated protein kinase-activated protein kinase 3	protein-coding	2.26675859990212	1.9327854675499	2.66820606844621	3.04304747544925	1.55702384938986	2.78205462082675	2.22039551060966	2.28429063996217	-0.584131339253912	0.498417828939129	0.937121854747785
Merged-chr17-29071648-2	chr17	29071548	29071748	+	780.166626	f1_balb.idr|f1_c57bl6.idr	intron (NR_036469, intron 1 of 1)	intron (NR_036469, intron 1 of 1)	7478.0	NR_036469	100504267.0	Mm.438550	NR_036469	ENSMUSG00000085912	Trp53cor1	Gm16197|linc-p21|lincRNA-p21	tumor protein p53 pathway corepressor 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-89302387-2	chr12	89302287	89302487	+	605.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001198587, intron 7 of 19)	intron (NM_001198587, intron 7 of 19)	348997.0	NM_172544	18191.0	Mm.425766	NM_172544	ENSMUSG00000066392	Nrxn3	-	neurexin III	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-102479141-2	chr9	102479041	102479241	+	550.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26997.0	NM_024291	16716.0	Mm.101692	NM_024291	ENSMUSG00000035606	Ky	CD1|D9Mgc44e|ky	kyphoscoliosis peptidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-43376758-3	chr17	43376672	43376872	+	712.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357332, intron 1 of 20)	intron (NM_001357332, intron 1 of 20)	-12694.0	NM_001081178	224792.0	Mm.23478	NM_001081178	ENSMUSG00000056492	Adgrf5	8430401C09Rik|9330185D23|AI528491|Gpr116|mKIAA0758	adhesion G protein-coupled receptor F5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-111083751-3	chr9	111083653	111083853	+	890.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26235.0	NM_001302376	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-88351129-4	chr4	88350988	88351188	+	866.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081184, intron 28 of 43)	intron (NM_001081184, intron 28 of 43)	87838.0	NM_025760	66775.0	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-150895144-3	chr2	150895066	150895266	+	858.1333619999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151505, intron 1 of 12)	B4A|SINE|B4	9565.0	NM_024465	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-22085586-4	chr14	22085482	22085682	+	967.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028275, intron 2 of 6)	intron (NM_028275, intron 2 of 6)	65870.0	NM_028275	76633.0	Mm.489898	NM_028275	ENSMUSG00000063458	Lrmda	1700112E06Rik|2700009F18Rik	leucine rich melanocyte differentiation associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-57063267-2	chr17	57063167	57063367	+	753.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359813, intron 2 of 3)	intron (NM_001359813, intron 2 of 3)	1036.0	NM_177638	224912.0	Mm.284447	NM_177638	ENSMUSG00000044279	Crb3	5730439B18|AU015179|AU041752	crumbs family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126571252-4	chr8	126571126	126571326	+	961.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22210.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-106903958-4	chr9	106903865	106904065	+	844.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153413, intron 49 of 52)	intron (NM_153413, intron 49 of 52)	-12027.0	NM_029103	74840.0	Mm.29778	NM_029103	ENSMUSG00000032575	Manf	3230402M22Rik|AA407711|AA408789|AA673178|Armet|D17914|D18Mgi17	mesencephalic astrocyte-derived neurotrophic factor	protein-coding	3.54000756975453	3.60101361224721	3.82389878631244	3.88657067233143	3.07701757320618	2.53558854404724	2.24435950862984	3.54929834797097	-1.202069835533	0.0446421469379069	0.303982110647563
Merged-chr8-117347823-2	chr8	117347723	117347923	+	636.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	-1347.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-25832757-4	chr15	25832650	25832850	+	940.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10548.0	NM_001034851	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135458486-2	chr5	135458386	135458586	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146001, intron 2 of 30)	intron (NM_146001, intron 2 of 30)	-63940.0	NM_148932	107939.0	Mm.28399	NM_148932	ENSMUSG00000053293	Pom121	2610027A18Rik|C80273|mKIAA0618	nuclear pore membrane protein 121	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-30727321-1	chr15	30727221	30727421	+	570.0	f0_balb.idr	intron (NM_001355502, intron 9 of 21)	RMER6A|LTR|ERVK	-311805.0	NR_045186	73784.0	Mm.66947	NR_045186	ENSMUSG00000115474	4930430F21Rik	-	RIKEN cDNA 4930430F21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117215948-2	chr10	117215848	117216048	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_026570, intron 6 of 6)	intron (NM_026570, intron 6 of 6)	8559.0	NM_026570	64050.0	Mm.233529	NM_026570	ENSMUSG00000020171	Yeats4	4930573H17Rik|B230215M10Rik|GAS41|NuBI-1	YEATS domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-86977497-4	chr10	86977387	86977587	+	916.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138673, intron 5 of 68)	intron (NM_138673, intron 5 of 68)	30455.0	NM_138673	192188.0	Mm.279611	NM_138673	ENSMUSG00000035459	Stab2	FEEL-2|FELL|MFEEL-2|STAB-2	stabilin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-83847170-2	chr12	83847070	83847270	+	739.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_073564, intron 3 of 12)	intron (NR_073564, intron 3 of 12)	-4812.0	NM_010949	18222.0	Mm.4390	NM_010949	ENSMUSG00000021224	Numb	Nb	NUMB endocytic adaptor protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-66280296-4	chr14	66280191	66280391	+	927.8250119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	761.0	NM_001162366	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	1.77181051221598	1.8048442765208	1.50006133653537	1.32078538646737	1.61231737261476	1.22294882239857	1.51164777823145	0.970495230110893	-0.931555503171242	0.433950547057948	0.906115326070529
Merged-chr5-100705940-4	chr5	100705842	100706042	+	937.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152803, intron 3 of 11)	Tigger1|DNA|TcMar-Tigger	13774.0	NM_152803	15442.0	Mm.265786	NM_152803	ENSMUSG00000035273	Hpse	HSE1|Hpa|Hpr1	heparanase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32353339-4	chr2	32353243	32353443	+	979.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_125959)	promoter-TSS (NR_125959)	-14.0	NM_010065	13429.0	Mm.44736	NM_010065	ENSMUSG00000026825	Dnm1	AI838169|Dnm|Ftfl|mKIAA4093	dynamin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-122274297-4	chr3	122274195	122274395	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153806)	promoter-TSS (NM_153806)	-119.0	NM_153806	99480.0	Mm.398647	NM_153806	ENSMUSG00000039756	Dnttip2	4930588M11Rik|AA408582|AU014960|HSU15552	deoxynucleotidyltransferase, terminal, interacting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-130453946-4	chr5	130453768	130453968	+	906.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021371, intron 1 of 5)	ID_B1|SINE|B4	5076.0	NM_021371	140904.0	Mm.40875	NM_021371	ENSMUSG00000060371	Caln1	9630012C17Rik|Cabp8|MNCb-0849	calneuron 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-77054981-2	chr18	77054881	77055081	+	664.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7685.0	NM_027721	71206.0	Mm.35803	NM_027721	ENSMUSG00000025420	Katnal2	3110023G01Rik|4933439B08Rik	katanin p60 subunit A-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-112774773-2	chr12	112774673	112774873	+	717.900024	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14118.0	NM_178911	104759.0	Mm.203915	NM_178911	ENSMUSG00000052160	Pld4	AI132321|thss	phospholipase D family, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-96853591-1	chr5	96853491	96853691	+	657.0	f1_c57bl6.idr	Intergenic	Intergenic	60206.0	NM_013470	11745.0	Mm.7214	NM_013470	ENSMUSG00000029484	Anxa3	Anx3	annexin A3	protein-coding	2.01002407939025	1.99899722582304	0.911375443241135	1.95900101003637	1.0819227161229	2.2239676708184	0.916378735976557	0.896692873278943	-1.03041963937259	0.437227252326344	0.908551975084304
Merged-chr11-96760195-3	chr11	96760094	96760294	+	731.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001177899)	TTS (NM_001177899)	17361.0	NM_028965	74479.0	Mm.270781	NM_028965	ENSMUSG00000020876	Snx11	4933439F10Rik|A930041K09Rik|AI117694	sorting nexin 11	protein-coding	2.30362582403192	1.47479881979677	2.88516088273713	2.721878474353	2.8282127439687	2.71965141383725	2.51849183166675	1.86477205604471	0.159887920258895	0.853170087497187	0.998431161219273
Merged-chr1-60860193-2	chr1	60860093	60860293	+	763.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4|SINE|ID	-48832.0	NM_009843	12477.0	Mm.390	NM_009843	ENSMUSG00000026011	Ctla4	Cd152|Ctla-4|Ly-56	cytotoxic T-lymphocyte-associated protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124712889-2	chr6	124712789	124712989	+	989.3333130000001	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013536)	promoter-TSS (NM_013536)	600.0	NM_007531	12034.0	Mm.36241	NM_007531	ENSMUSG00000004264	Phb2	AU044498|BAP|Bap37|Bcap37|REA	prohibitin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-25323943-1	chr17	25323843	25324043	+	837.0	f1_c57bl6.idr	Intergenic	Intergenic	5289.0	NM_053260	114662.0	Mm.207082	NM_053260	ENSMUSG00000034039	Prss29	D19363|Isp2|mISP-2	protease, serine 29	protein-coding	-1.3681463318974	-1.33624156493372	-1.34650167276047	-0.80669348975676	-1.36769697821496	-1.33401815676661	-1.34417900924365	-1.3534210303531	-2.3580830592467	0.49586638340111	1
Merged-chr16-33922447-4	chr16	33922359	33922559	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 10 of 14)	intron (NM_001145884, intron 10 of 14)	44579.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-88726804-4	chr4	88726710	88726910	+	849.9916380000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-4302.0	NM_172871	242521.0	Mm.260601	NM_172871	ENSMUSG00000070923	Klhl9	8030469P05|C530050O22Rik|mKIAA1354	kelch-like 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-60869644-2	chr8	60869544	60869744	+	702.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20749.0	NM_028299	72612.0	Mm.25263	NM_028299	ENSMUSG00000038005	Hpf1	2700029M09Rik|C230006B22Rik|C4orf27	histone PARylation factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4913163-4	chr16	4913055	4913255	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357062, intron 4 of 17)	intron (NM_001357062, intron 4 of 17)	-25956.0	NM_001316715	66911.0	Mm.428698	NM_025839	ENSMUSG00000022516	Nudt16l1	1110001K21Rik|5330437I08Rik|Sdos	nudix (nucleoside diphosphate linked moiety X)-type motif 16-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-24425827-2	chr5	24425727	24425927	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009207, intron 1 of 22)	intron (NM_009207, intron 1 of 22)	595.0	NM_009207	20535.0	Mm.4580	NM_009207	ENSMUSG00000028962	Slc4a2	Ae2|B3RP	solute carrier family 4 (anion exchanger), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-122569043-2	chr10	122568943	122569143	+	926.125	f1_balb.idr|f1_c57bl6.idr	intron (NR_040616, intron 1 of 2)	intron (NR_040616, intron 1 of 2)	848.0	NR_040616	319272.0	Mm.411763	NR_040616	ENSMUSG00000112095	A130077B15Rik	-	RIKEN cDNA A130077B15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-83673305-4	chr2	83673207	83673407	+	920.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28729.0	NM_026934	69082.0	Mm.27804	NM_026934	ENSMUSG00000027091	Zc3h15	1700006A17Rik|1810012H02Rik|2610312B22Rik|FM22|Ierepo4	zinc finger CCCH-type containing 15	protein-coding	0.80014576485349	0.799693297994408	1.20254276488782	0.595832000015831	0.809085101599538	0.444530232363549	0.436916788152439	0.599041801120677	-1.7287331199128	0.29079423963162	1
Merged-chr14-58383068-2	chr14	58382968	58383168	+	666.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	310382.0	NM_013518	14180.0	Mm.8846	NM_013518	ENSMUSG00000021974	Fgf9	Eks	fibroblast growth factor 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-25799749-2	chr16	25799649	25799849	+	658.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001127259, intron 3 of 13)	MIR3|SINE|MIR	-2167.0	NM_001127263	22061.0	Mm.20894	NM_011641	ENSMUSG00000022510	Trp63	AI462811|Ket|P51/P63|P63|P73l|Tp63|Trp53rp1	transformation related protein 63	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-42150879-2	chr15	42150779	42150979	+	811.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-281159.0	NM_175456	223513.0	Mm.148913	NM_175456	ENSMUSG00000042895	Abra	C130068O12Rik|STARS	actin-binding Rho activating protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-44997277-2	chr2	44997177	44997377	+	716.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001355289, exon 9 of 11)	exon (NM_001355289, exon 9 of 11)	25900.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-36066089-4	chr3	36066016	36066216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172678, exon 1 of 18)	exon (NM_172678, exon 1 of 18)	137.0	NM_172678	229211.0	Mm.260997	NM_172678	ENSMUSG00000027710	Acad9	2600017P15Rik|4732402K02|C630012L17Rik|NPD002	acyl-Coenzyme A dehydrogenase family, member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-8864056-2	chr12	8863956	8864156	+	651.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	-57251.0	NM_008640	17775.0	Mm.30071	NM_008640	ENSMUSG00000020585	Laptm4a	AA286466|LAPTM4|MTP|Mtrp|mKIAA0108	lysosomal-associated protein transmembrane 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-80408783-4	chr18	80408688	80408888	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026295, intron 12 of 12)	intron (NM_026295, intron 12 of 12)	-44534.0	NM_001190373	240444.0	Mm.279568	NM_001190373	ENSMUSG00000059852	Kcng2	AA591524	potassium voltage-gated channel, subfamily G, member 2	protein-coding	3.49224188909931	4.00102752205939	2.94556365212269	4.02204539921002	4.16141800950012	4.29879987033922	4.38363940142716	4.71495184914702	0.987324539657974	0.0322721000844162	0.249592172419097
Merged-chr11-75636721-4	chr11	75636622	75636822	+	995.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008916, intron 3 of 11)	intron (NM_008916, intron 3 of 11)	5702.0	NM_008916	19062.0	Mm.1458	NM_008916	ENSMUSG00000006127	Inpp5k	C62|Pps|SKIP	inositol polyphosphate 5-phosphatase K	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-51855474-4	chr14	51855376	51855576	+	791.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_053111)	TTS (NM_053111)	1478.0	NM_017385	53873.0	Mm.221324	NM_017385		Ear7	mR7	eosinophil-associated, ribonuclease A family, member 7	protein-coding	4.17338674238764	3.92303122465135	3.327266101672	5.13030142772579	3.85187685463514	3.78195428318353	3.82122288113122	3.98019736063351	-0.611071761964922	0.223488682107398	0.714791840691861
Merged-chr8-13550683-2	chr8	13550583	13550783	+	639.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001080781)	TTS (NM_001080781)	11778.0	NM_025601	66501.0	Mm.46136	NM_025601	ENSMUSG00000031452	1700029H14Rik	-	RIKEN cDNA 1700029H14 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-51644199-2	chr13	51644099	51644299	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1033.0	NM_025415	66197.0	Mm.222228	NM_025415	ENSMUSG00000062248	Cks2	1110038L14Rik|CKSHS2	CDC28 protein kinase regulatory subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-49430625-2	chr17	49430525	49430725	+	603.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_020042, intron 1 of 10)	intron (NM_020042, intron 1 of 10)	2261.0	NM_020042	56738.0	Mm.22256	NM_020042	ENSMUSG00000064120	Mocs1	3110045D15Rik|AI043170|AW536397	molybdenum cofactor synthesis 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70018537-3	chr11	70018447	70018647	+	907.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001109752)	promoter-TSS (NM_001109752)	-58.0	NM_001109752	13385.0	Mm.27256	NM_007864	ENSMUSG00000020886	Dlg4	Dlgh4|PSD-95|PSD95|SAP90|SAP90A	discs large MAGUK scaffold protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-20290617-3	chr10	20290528	20290728	+	830.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7060.0	NR_105840	102466647.0		NR_105840	ENSMUSG00000098887	Mir6413	Gm27432|mmu-mir-6413	microRNA 6413	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101759731-3	chr11	101759609	101759809	+	950.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144831, intron 18 of 22)	intron (NM_144831, intron 18 of 22)	25601.0	NM_008815	18612.0	Mm.5025	NM_008815	ENSMUSG00000017724	Etv4	AW414408|Pea-3|Pea3	ets variant 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-75060718-2	chr15	75060618	75060818	+	978.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-11881.0	NM_001252056	17067.0	Mm.1583	NM_010741	ENSMUSG00000079018	Ly6c1	AA682074|AA959465|Ly-6C|Ly-6C1|Ly6c	lymphocyte antigen 6 complex, locus C1	protein-coding	-0.275751015963025	-0.392101686163133	-0.237721561783198	-0.0172330629058577	-0.272212660724326	-0.391377269953045	-0.394596134250129	-0.12279132485304	-0.747148507595955	0.743250030307874	1
Merged-chr12-110697844-2	chr12	110697744	110697944	+	936.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-1449.0	NM_010480	15519.0	Mm.1843	NM_010480	ENSMUSG00000021270	Hsp90aa1	86kDa|89kDa|AL024080|AL024147|Hsp86-1|Hsp89|Hsp90|Hspca|hsp4	heat shock protein 90, alpha (cytosolic), class A member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-23895437-2	chr13	23895337	23895537	+	953.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_121611, exon 13 of 13)	non-coding (NR_121611, exon 13 of 13)	19570.0	NM_177016	319848.0	Mm.97959	NM_177016	ENSMUSG00000021336	Slc17a4	9130214H05Rik	solute carrier family 17 (sodium phosphate), member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-138212995-2	chr4	138212895	138213095	+	578.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-3617.0	NM_001122896	15441.0	Mm.348429	NM_010470	ENSMUSG00000028759	Hp1bp3	Hp1bp74	heterochromatin protein 1, binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-25193597-4	chr2	25193499	25193699	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_146115, exon 2 of 2)	3' UTR (NM_146115, exon 2 of 2)	3214.0	NM_146115	227612.0	Mm.119747	NM_146115	ENSMUSG00000059555	Tor4a	A830007P12Rik	torsin family 4, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-80409987-2	chr18	80409887	80410087	+	560.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026295, intron 12 of 12)	intron (NM_026295, intron 12 of 12)	-45733.0	NM_001190373	240444.0	Mm.279568	NM_001190373	ENSMUSG00000059852	Kcng2	AA591524	potassium voltage-gated channel, subfamily G, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80035257-3	chr7	80035140	80035340	+	831.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175433, intron 1 of 4)	intron (NM_175433, intron 1 of 4)	9012.0	NM_175433	209225.0	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33683908-4	chr16	33683834	33684034	+	887.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175256)	promoter-TSS (NM_175256)	-532.0	NM_175256	77446.0	Mm.245741	NM_172934	ENSMUSG00000075254	Heg1	4632417D23Rik|5530401I02Rik|9530025L16Rik|BC038614|Gm629	heart development protein with EGF-like domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-61587646-2	chr8	61587546	61587746	+	727.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001293772, intron 10 of 21)	intron (NM_001293772, intron 10 of 21)	3523.0	NM_001293774	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-95828320-4	chr11	95828195	95828395	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153104, intron 1 of 2)	MIRb|SINE|MIR	3795.0	NM_153104	237928.0	Mm.133075	NM_153104	ENSMUSG00000050860	Phospho1	D11Moh36|Phospo1	phosphatase, orphan 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-84391014-3	chr3	84390925	84391125	+	620.200012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-11104.0	NR_040752	75309.0	Mm.159497	NR_040752	ENSMUSG00000104004	4930565D16Rik	-	RIKEN cDNA 4930565D16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-75262700-8	chr18	75262605	75262805	+	906.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027727, intron 16 of 16)	intron (NM_027727, intron 16 of 16)	34612.0	NR_045394	100503117.0	Mm.250517	NR_045393	ENSMUSG00000102047	2010010A06Rik	5033420E22Rik	RIKEN cDNA 2010010A06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-35029696-1	chr7	35029596	35029796	+	544.0	f0_balb.idr	intron (NM_008820, intron 11 of 14)	intron (NM_008820, intron 11 of 14)	26870.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-35752597-2	chr5	35752497	35752697	+	738.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-5283.0	NM_001177697	231148.0	Mm.254446	NM_177678	ENSMUSG00000029095	Ablim2	AI606905|C230091L11	actin-binding LIM protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-75150231-2	chr5	75150131	75150331	+	680.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2020.0	NR_144636	18595.0	Mm.221403	NM_011058	ENSMUSG00000029231	Pdgfra	AI115593|CD140a|Pdgfr-2	platelet derived growth factor receptor, alpha polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-165680556-4	chr1	165680436	165680636	+	982.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038846, intron 1 of 5)	intron (NM_001038846, intron 1 of 5)	27558.0	NM_001038846	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-111009986-4	chr10	111009901	111010101	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172554)	promoter-TSS (NM_172554)	8.0	NM_001359622	320150.0	Mm.339281	NM_172554	ENSMUSG00000035798	Zdhhc17	A230053P19Rik|BB187739|D130071N24Rik|DHHC-17|Hip14	zinc finger, DHHC domain containing 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-103013933-2	chr14	103013833	103014033	+	664.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_045657, intron 2 of 2)	ORR1A2|LTR|ERVL-MaLR	19870.0	NR_045657	71264.0	Mm.399572	NR_045657	ENSMUSG00000114980	4933432I03Rik	-	RIKEN cDNA 4933432I03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-7311379-2	chr19	7311279	7311479	+	590.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080388, intron 1 of 16)	intron (NM_001080388, intron 1 of 16)	-15932.0	NM_001080390	13728.0	Mm.258986	NM_007928	ENSMUSG00000024969	Mark2	EMK-1|Emk|Par-1|Par-1b	MAP/microtubule affinity regulating kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-82505164-4	chr18	82505046	82505246	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025245, intron 2 of 3)	intron (NM_001025245, intron 2 of 3)	30023.0	NM_010777	17196.0	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-88241769-3	chr9	88241662	88241862	+	852.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-85847.0	NM_011851	23959.0	Mm.244235	NM_011851	ENSMUSG00000032420	Nt5e	2210401F01Rik|5'-NT|AI447961|CD73|NT|Nt5|eNT	5' nucleotidase, ecto	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-100529154-3	chr9	100529014	100529214	+	641.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010878, intron 1 of 3)	RLTR30D_MM|LTR|ERV1	17020.0	NM_010878	17973.0	Mm.181485	NM_010878	ENSMUSG00000032475	Nck1	6330586M15Rik|D230010O13Rik|Nck|Nck-1	non-catalytic region of tyrosine kinase adaptor protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-90268308-2	chr9	90268208	90268408	+	878.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 1 of 12)	intron (NM_194334, intron 1 of 12)	2461.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-61488807-2	chr18	61488707	61488907	+	600.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4200.0	NR_045419	442846.0	Mm.417648	NR_045419		A530050N04Rik	-	RIKEN cDNA A530050N04 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-113654297-4	chr6	113654180	113654380	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 2 of 11)	intron (NM_001113553, intron 2 of 11)	15813.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-102619813-3	chr7	102619692	102619892	+	780.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR34B_MM|LTR|ERVK	-4805.0	NM_207621	233578.0	Mm.377251	NM_207621	ENSMUSG00000073972	Olfr553	MOR25-2	olfactory receptor 553	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-58640579-4	chr6	58640529	58640729	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011920, intron 1 of 15)	CpG	43957.0	NM_011920	26357.0	Mm.333096	NM_011920	ENSMUSG00000029802	Abcg2	ABC15|ABCP|AI428558|BCRP|Bcrp1|MXR|MXR1	ATP binding cassette subfamily G member 2 (Junior blood group)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10449918-2	chr19	10449818	10450018	+	839.4166869999999	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_173068, exon 11 of 11)	3' UTR (NM_173068, exon 11 of 11)	7529.0	NM_001111140	278795.0	Mm.490638	NM_001111140	ENSMUSG00000090291	Lrrc10b	Gm705|SerdinR	leucine rich repeat containing 10B	protein-coding	-1.56355737717652	-1.81244775989375	-1.82128546162293	-1.82854501295842	-1.83962066705452	-1.81053259306168	-1.81928479966835	-1.82724555674025	-1.28500227969968	0.715751224811686	1
Merged-chr10-79983602-6	chr10	79983171	79983371	+	956.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359632, intron 1 of 9)	intron (NM_001359632, intron 1 of 9)	989.0	NM_001359632	216157.0	Mm.29442	NM_001003949	ENSMUSG00000013858	Tmem259	AC087114.7gm2|ORF61|R32184_3|mFLJ00277	transmembrane protein 259	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-34724812-4	chr19	34724721	34724921	+	633.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172838, intron 1 of 6)	intron (NM_172838, intron 1 of 6)	22290.0	NM_172838	240638.0	Mm.74636	NM_172838	ENSMUSG00000009378	Slc16a12	3230401A21|AW210596	solute carrier family 16 (monocarboxylic acid transporters), member 12	protein-coding	1.95871693035167	1.80821101785827	1.13941513055494	2.56292320326345	1.75521441831074	1.17029126522988	2.34976009957434	1.84627617663365	-0.323448027411193	0.771028024498412	0.998431161219273
Merged-chr4-14170343-2	chr4	14170243	14170443	+	551.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	120966.0	NR_131155	100040030.0	Mm.366499	NR_131155		Gm2560	-	predicted gene 2560	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-63613774-4	chr9	63613676	63613876	+	946.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151671, intron 1 of 9)	intron (NR_151671, intron 1 of 9)	11130.0	NR_151671	66939.0	Mm.34338	NM_025857	ENSMUSG00000037257	Aagab	2310007F21Rik|p34	alpha- and gamma-adaptin binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101252356-2	chr15	101252256	101252456	+	871.1666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15-int|LTR|ERVL	-14490.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-116122951-2	chr4	116122851	116123051	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_131048)	promoter-TSS (NR_131048)	738.0	NM_009015	19366.0	Mm.3655	NM_009015	ENSMUSG00000028702	Rad54l	RAD54	RAD54 like (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-25556412-4	chr15	25556317	25556517	+	932.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66133.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-21807761-2	chr3	21807661	21807861	+	907.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1G|LTR|ERVL-MaLR	-268891.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-116556111-6	chr4	116556027	116556227	+	951.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177670)	promoter-TSS (NM_177670)	-184.0	NM_177670	230657.0	Mm.291484	NM_177670	ENSMUSG00000055900	Tmem69	A630048M13Rik	transmembrane protein 69	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180945498-3	chr1	180945396	180945596	+	832.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144794, intron 1 of 22)	intron (NM_144794, intron 1 of 22)	2978.0	NM_144794	208795.0	Mm.185518	NM_144794	ENSMUSG00000026519	Tmem63a	BC014795|Tmem64a	transmembrane protein 63a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32964730-2	chr2	32964630	32964830	+	786.166626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_009076)	TTS (NM_009076)	1429.0	NR_002898	104367.0	Mm.250030	NR_002898	ENSMUSG00000065124	Snora65	MBII-351|Rnu65	small nucleolar RNA, H/ACA box 65	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-69421777-4	chr17	69421684	69421884	+	779.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5337.0	NR_026848	77533.0	Mm.266592	NR_026848		C030034I22Rik	-	RIKEN cDNA C030034I22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-16378755-2	chr14	16378655	16378855	+	555.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009409, intron 1 of 35)	intron (NM_009409, intron 1 of 35)	13549.0	NM_009409	21974.0	Mm.130362	NM_009409	ENSMUSG00000017485	Top2b	D230016L12Rik|Top-2	topoisomerase (DNA) II beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-30378281-2	chr16	30378181	30378381	+	611.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001128096, intron 2 of 33)	B1_Mur2|SINE|Alu	10249.0	NM_001128094	224088.0	Mm.8924	NM_001128094	ENSMUSG00000022533	Atp13a3	AU022875|Gm1745|Gm541|Gm542	ATPase type 13A3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-180705325-4	chr2	180705227	180705427	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291432, intron 1 of 5)	intron (NM_001291432, intron 1 of 5)	-3225.0	NM_175551	23856.0	Mm.253836	NM_011805	ENSMUSG00000038914	Dido1	6720461J16Rik|D130048F08Rik|DATF-1|DIO-1|Datf1|dido	death inducer-obliterator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-12460731-3	chr19	12460625	12460825	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010821)	promoter-TSS (NM_010821)	-54.0	NM_010821	17476.0	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	3.09478196097812	2.6656409539158	3.41918451579832	2.19467601312899	1.91780621899771	2.68585287240397	3.57225691628725	3.04313683001224	0.0256605670712364	0.972673184533603	0.998431161219273
Merged-chr8-126827595-2	chr8	126827495	126827695	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-21425.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-17967475-4	chr14	17967369	17967569	+	959.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113417, intron 4 of 9)	intron (NM_001113417, intron 4 of 9)	-14175.0	NM_009380	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-48882066-2	chr7	48881966	48882166	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360812)	promoter-TSS (NM_001360812)	-470.0	NM_001360812	108961.0	Mm.240566	NM_001013368	ENSMUSG00000046179	E2f8	4432406C08Rik|AA410048	E2F transcription factor 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171282728-2	chr1	171282628	171282828	+	671.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_013919, exon 11 of 13)	exon (NM_013919, exon 11 of 13)	-1542.0	NM_008911	19044.0	Mm.266888	NM_008911	ENSMUSG00000062729	Ppox	Ppo	protoporphyrinogen oxidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-76620416-1	chr2	76620316	76620516	+	609.0	f0_balb.idr	Intergenic	Intergenic	27578.0	NM_011871	23992.0	Mm.277250	NM_011871	ENSMUSG00000002731	Prkra	AV120107|PRK|Pact|RAX|lear	protein kinase, interferon inducible double stranded RNA dependent activator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123890661-2	chr5	123890588	123890788	+	703.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-10668.0	NM_175520	243270.0	Mm.33362	NM_175520	ENSMUSG00000049241	Hcar1	Gpr81	hydrocarboxylic acid receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-96630638-2	chr7	96630532	96630732	+	718.25	f0_balb.idr|f1_balb.idr	intron (NM_011858, intron 5 of 32)	RLTR45|LTR|ERVK	170917.0	NR_045874	791381.0	Mm.402112	NR_045874	ENSMUSG00000053049	Gm15413	-	predicted gene 15413	ncRNA	1.30997146715283	2.23559123644501	2.32505332989133	2.64887685560574	2.97004599106831	2.72945574750824	4.03385898027839	2.77126641559393	1.92949230915946	0.0161670557131656	0.153047401879808
Merged-chr10-126498889-1	chr10	126498789	126498989	+	597.0	f0_balb.idr	Intergenic	Intergenic	211502.0	NR_105841	102465224.0		NR_105841	ENSMUSG00000098756	Mir378d	Gm27650|mmu-mir-378d	microRNA 378d	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-11636462-4	chr8	11636356	11636556	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001281975)	promoter-TSS (NM_001281975)	-699.0	NM_001281974	102334.0	Mm.12459	NM_133971	ENSMUSG00000031508	Ankrd10	4833425P12Rik|AW549277	ankyrin repeat domain 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-23560844-2	chr13	23560721	23560921	+	879.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	1544.0	NM_178205	319151.0	Mm.261658	NM_178205	ENSMUSG00000069273	Hist1h3e	H3-f|H3.1	histone cluster 1, H3e	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-22940214-2	chr8	22940114	22940314	+	553.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081149, exon 18 of 18)	exon (NM_001081149, exon 18 of 18)	-34622.0	NM_001110783	11733.0	Mm.334444	NM_031158	ENSMUSG00000031543	Ank1	Ank-1|nb|pale	ankyrin 1, erythroid	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-164586737-4	chr1	164586648	164586848	+	926.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	83441.0	NR_151593	102635083.0	Mm.98705	NR_151593	ENSMUSG00000097281	Gm26685	-	predicted gene, 26685	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-62984845-2	chr18	62984745	62984945	+	625.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028017, intron 5 of 11)	B4|SINE|B4	6929.0	NM_028017	108123.0	Mm.292687	NM_028017	ENSMUSG00000024581	Napg	2400003O04Rik|SNARE	N-ethylmaleimide sensitive fusion protein attachment protein gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-24839423-2	chr5	24839323	24839523	+	864.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_053075, intron 1 of 7)	intron (NM_053075, intron 1 of 7)	2938.0	NM_053075	19744.0	Mm.319175	NM_053075	ENSMUSG00000028945	Rheb	Rheb1	Ras homolog enriched in brain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107573352-2	chr9	107573258	107573458	+	860.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_010489)	TTS (NM_010489)	-3569.0	NM_008317	15586.0	Mm.475658	NM_008317	ENSMUSG00000010051	Hyal1	Hya1|Hyal-1	hyaluronoglucosaminidase 1	protein-coding	-0.469288413562176	-0.455375452868271	0.0229078923212936	-0.463432265306256	-0.468415576887814	0.317747178220054	-0.45891427541494	-0.462817539064673	0.945913031927485	0.726384495909198	1
Merged-chr3-116128192-2	chr3	116128077	116128277	+	892.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011693, intron 2 of 8)	intron (NM_011693, intron 2 of 8)	1511.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	-0.393695853632059	-0.751181653761304	-0.754251884853322	-0.756614066174729	-0.20124806483922	-0.750488270562737	-0.753575544849141	-0.756201818088136	0.759966263124917	0.800583933387673	1
Merged-chr9-82973409-3	chr9	82973317	82973517	+	878.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081216, intron 4 of 39)	intron (NM_001081216, intron 4 of 39)	2072.0	NM_001081216	83946.0	Mm.221688	NM_031879	ENSMUSG00000032253	Phip	2810004D21Rik|4632404O06Rik|Ndrp|Wdr11	pleckstrin homology domain interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-81572386-4	chr7	81572376	81572576	+	988.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004185, intron 1 of 9)	intron (NM_001004185, intron 1 of 9)	1184.0	NM_001004185	434204.0	Mm.181641	NM_001004185	ENSMUSG00000045795	Whamm	BB081391|Whdc1|mKIAA1971	WAS protein homolog associated with actin, golgi membranes and microtubules	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-61649959-3	chr15	61649871	61650071	+	709.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	124480.0	NR_040350	432956.0	Mm.404918	NR_040350	ENSMUSG00000116031	D030024E09Rik	-	RIKEN cDNA D030024E09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46526697-1	chr19	46526597	46526797	+	736.0	f1_balb.idr	Intergenic	Intergenic	25049.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	1.3051679017396	1.31296195327668	0.893649582950189	1.37569441535119	1.42914996982741	0.911180819352302	1.86715682842137	1.71364893436122	1.12818860362622	0.379730378651794	0.871899780487614
Merged-chr12-85697099-2	chr12	85696999	85697199	+	564.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016767, intron 2 of 2)	B3|SINE|B2	10379.0	NM_016767	53314.0	Mm.6672	NM_016767	ENSMUSG00000034266	Batf	B-ATF|SFA-2	basic leucine zipper transcription factor, ATF-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-87101606-2	chr6	87101506	87101706	+	997.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3140.0	NM_001167938	52372.0	Mm.282851	NM_001167937	ENSMUSG00000090891	D6Ertd527e	AU043841	DNA segment, Chr 6, ERATO Doi 527, expressed	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-85719516-1	chr8	85719416	85719616	+	592.0	f1_balb.idr	intron (NM_028007, intron 17 of 17)	intron (NM_028007, intron 17 of 17)	-18592.0	NM_001357288	74513.0	Mm.126079	NM_001081324	ENSMUSG00000036902	Neto2	5530601C23Rik|AI854825|BTCL2	neuropilin (NRP) and tolloid (TLL)-like 2	protein-coding	-1.06967240680523	-0.710236069543226	-1.06098991211599	-1.06646171652364	-0.691974872235455	-1.04731351244657	-1.05844530252289	-1.06612305398732	0.197949653019194	0.951687751235799	1
Merged-chr10-24087141-3	chr10	24087054	24087254	+	802.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5140.0	NM_001010837	382348.0	Mm.377897	NM_001010837	ENSMUSG00000100186	Taar8b	Gm1149|taR-8b	trace amine-associated receptor 8B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-145937999-4	chr3	145937966	145938166	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356284)	promoter-TSS (NM_001356284)	52.0	NR_151446	66421.0	Mm.25137	NM_025555	ENSMUSG00000036873	2410004B18Rik	4930572C24Rik	RIKEN cDNA 2410004B18 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-89442815-4	chr10	89442707	89442907	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001079876, intron 1 of 10)	intron (NM_001079876, intron 1 of 10)	1160.0	NM_001284344	237436.0	Mm.11982	NM_001033331	ENSMUSG00000074802	Gas2l3	8430435B07Rik|Gm240	growth arrest-specific 2 like 3	protein-coding	5.62932598154203	5.389085507494	5.65882222996286	5.34476015115836	5.72198741833045	5.55235184721919	4.58207165535382	4.54980649397458	-0.349854327245323	0.294209768241602	0.798191705447
Merged-chr14-37134748-4	chr14	37134645	37134845	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_078478, intron 1 of 8)	intron (NM_078478, intron 1 of 8)	394.0	NM_001199122	66092.0	Mm.182912	NM_078478	ENSMUSG00000041028	Ghitm	1010001P14Rik|C77840|MICS1|PTD010|Tmbim5	growth hormone inducible transmembrane protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-120216757-1	chr14	120216657	120216857	+	563.0	f0_balb.idr	Intergenic	MTD|LTR|ERVL-MaLR	-58912.0	NM_207515	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98784357-2	chr11	98784257	98784457	+	632.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8980.0	NM_145434	217166.0	Mm.390397	NM_145434	ENSMUSG00000020889	Nr1d1	A530070C09Rik|R75201	nuclear receptor subfamily 1, group D, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-24341643-4	chr2	24341527	24341727	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031167, intron 1 of 4)	intron (NM_031167, intron 1 of 4)	-3664.0	NM_001159562	16181.0	Mm.882	NM_031167	ENSMUSG00000026981	Il1rn	F630041P17Rik|IL-1ra	interleukin 1 receptor antagonist	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-73778263-2	chr12	73778163	73778363	+	926.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001313977)	TTS (NM_001313977)	-123061.0	NM_001313920	15251.0	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-85036047-4	chr8	85035934	85036134	+	955.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145390)	promoter-TSS (NM_145390)	-881.0	NM_145390	212999.0	Mm.220357	NM_145390	ENSMUSG00000031691	Tnpo2	1110034O24Rik|AA414969|AI464345|AI852433|IPO3|Knpb2b|Kpnb2b|TRN2	transportin 2 (importin 3, karyopherin beta 2b)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97359485-2	chr6	97359385	97359585	+	981.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 6 of 23)	L1MC4|LINE|L1	99801.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-87513600-4	chr6	87513493	87513693	+	848.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037727, intron 1 of 10)	intron (NM_001037727, intron 1 of 10)	-17266.0	NM_175476	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-48872999-2	chr13	48872899	48873099	+	762.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2114.0	NM_011078	18676.0	Mm.486213	NM_011078	ENSMUSG00000038025	Phf2	GRC5	PHD finger protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-18987711-3	chr2	18987630	18987830	+	850.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008845, intron 1 of 9)	RMER4B|LTR|ERVK	10391.0	NM_008845	18718.0	Mm.313977	NM_008845	ENSMUSG00000026737	Pip4k2a	AW742916|Pip5k2a	phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-95859254-3	chr11	95859174	95859374	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045187, intron 1 of 1)	CpG	457.0	NR_045187	73906.0	Mm.399894	NR_045187	ENSMUSG00000086015	4833417C18Rik	-	RIKEN cDNA 4833417C18 gene	ncRNA	3.15452749919322	4.05959536317819	1.97110475035801	4.44533334070088	3.09518104900905	2.53730446832958	3.89892991449132	3.72091381628198	-0.42370711553184	0.537369793010878	0.953963493057627
Merged-chr11-97512435-7	chr11	97512321	97512521	+	874.1904910000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_018873, exon 20 of 20)	3' UTR (NM_018873, exon 20 of 20)	-12081.0	NM_001289118	100141474.0	Mm.482426	NM_001289118	ENSMUSG00000047988	4933428G20Rik	-	RIKEN cDNA 4933428G20 gene	protein-coding	2.73419875753489	2.89949105803714	1.65121265901736	3.09334701163864	2.89659447018253	2.59830110298262	1.8877829335704	1.35282582105267	-0.740624681863592	0.418167710519382	0.898080810038401
Merged-chr19-32281413-2	chr19	32281313	32281513	+	827.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001168525, intron 2 of 9)	intron (NM_001168525, intron 2 of 9)	67903.0	NM_001168525	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30321749-4	chr7	30321675	30321875	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001033140, exon 1 of 1)	3' UTR (NM_001033140, exon 1 of 1)	600.0	NM_001033140	68332.0	Mm.6844	NM_001033140	ENSMUSG00000074211	Sdhaf1	0610010E21Rik|AI430885|AW490662|Lyrm8	succinate dehydrogenase complex assembly factor 1	protein-coding	4.22654861313912	4.70244719470015	4.10803738014941	3.77750668842593	4.34981723345681	4.99443506508496	4.43920051931546	4.79241860967254	0.543995460261656	0.174432220800155	0.642663775706403
Merged-chr9-72467720-3	chr9	72467609	72467809	+	919.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009359, intron 10 of 11)	intron (NM_009359, intron 10 of 11)	24250.0	NM_009359	21778.0	Mm.14485	NM_009359	ENSMUSG00000090626	Tex9	Gm19407|tsec-1	testis expressed gene 9	protein-coding	3.47524420227102	3.32886737632435	3.47620016251749	3.82232736380983	3.37762977510685	3.44809988114076	2.45871260163048	2.81952956263676	-0.727174484809024	0.215881549871927	0.706180188649098
Merged-chr17-28709929-4	chr17	28709805	28710005	+	923.160706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168514, intron 2 of 12)	intron (NM_001168514, intron 2 of 12)	17337.0	NM_001357724	26416.0	Mm.311337	NM_011951	ENSMUSG00000053436	Mapk14	CSBP2|Crk1|Csbp1|Mxi2|PRKM14|PRKM15|p38|p38-alpha|p38MAPK|p38a|p38alpha	mitogen-activated protein kinase 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-29291164-4	chr12	29291066	29291266	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	149237.0	NR_154987	102633526.0	Mm.134217	NR_154987		Gm31333	-	predicted gene, 31333	ncRNA	5.48053896196348	5.49813123901254	6.17565669400252	5.43661783111584	4.69554065460626	4.95170886102932	5.60493214542978	5.23094197502369	-0.60018865933897	0.0550353935032571	0.344954835514063
Merged-chr11-4637681-4	chr11	4637571	4637771	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029291)	promoter-TSS (NM_029291)	-122.0	NM_029291	75452.0	Mm.439906	NM_029291	ENSMUSG00000020412	Ascc2	1700011I11Rik|2610034L15Rik|AI482016|ASC1p100|AW046480	activating signal cointegrator 1 complex subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-12230289-4	chr12	12230180	12230380	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1D-int|LTR|ERVL-MaLR	-31859.0	NM_029758	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	6.24763488256458	6.69678029521563	6.03937630455033	5.86102287379328	5.981361764344	6.13756468688983	5.70834558115753	6.24901475497752	-0.228264014202014	0.354089778734801	0.853132398390271
Merged-chr3-8940913-2	chr3	8940813	8941013	+	856.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025263, intron 4 of 6)	intron (NM_001025263, intron 4 of 6)	-17056.0	NM_025434	66230.0	Mm.38460	NM_025434	ENSMUSG00000040269	Mrps28	1500012D08Rik|AW061224	mitochondrial ribosomal protein S28	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6164349-4	chr19	6164232	6164432	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028967)	promoter-TSS (NM_028967)	-107.0	NM_001356604	74481.0	Mm.159219	NM_028967	ENSMUSG00000039699	Batf2	B-ATF-2	basic leucine zipper transcription factor, ATF-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-129436901-2	chr6	129436801	129437001	+	768.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_175526, intron 2 of 5)	intron (NM_175526, intron 2 of 5)	15099.0	NM_001347475	243653.0	Mm.131289	NM_175526	ENSMUSG00000033082	Clec1a	5930406N14Rik	C-type lectin domain family 1, member a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-103403807-6	chr11	103403691	103403891	+	925.8703609999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183034, intron 2 of 11)	intron (NM_183034, intron 2 of 11)	8873.0	NM_183034	353047.0	Mm.18556	NM_183034	ENSMUSG00000034247	Plekhm1	AP162|B2|BC038943|D330036J23Rik	pleckstrin homology domain containing, family M (with RUN domain) member 1	protein-coding	2.42390587349936	2.53383722299688	1.28668977999759	2.71590785249331	2.59612165118266	1.82535275811354	1.29411808553216	2.38711937268866	-0.487020719810155	0.632240918968397	0.982230082053879
Merged-chr14-43918368-4	chr14	43918252	43918452	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5016.0	NM_053112	93725.0	Mm.429087	NM_053112	ENSMUSG00000090166	Ear10	Raf2	eosinophil-associated, ribonuclease A family, member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-119398417-4	chr12	119398314	119398514	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44996.0	NM_001163136	238455.0	Mm.31376	NM_001163136	ENSMUSG00000041886	Macc1	4732474O15Rik|Gm267	metastasis associated in colon cancer 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-80129155-2	chr12	80129055	80129255	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_033514, intron 2 of 2)	intron (NR_033514, intron 2 of 2)	3689.0	NR_033514	69548.0	Mm.269712	NR_033514		2310015A10Rik	5330419I17Rik	RIKEN cDNA 2310015A10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-67343423-4	chr18	67343397	67343597	+	807.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007702)	promoter-TSS (NM_007702)	-67.0	NM_007702	12683.0	Mm.449	NM_007702	ENSMUSG00000024526	Cidea	AW212747	cell death-inducing DNA fragmentation factor, alpha subunit-like effector A	protein-coding	1.12428548585555	1.40288372180423	0.736649767045698	0.907590344968172	1.57581209567752	1.13682428201705	0.934856110626605	1.06400994785261	0.603155089330538	0.657609749659846	0.988704682801132
Merged-chr1-93478419-4	chr1	93478322	93478522	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159718)	promoter-TSS (NM_001159718)	-45.0	NM_001357556	110611.0	Mm.30012	NM_133808	ENSMUSG00000034088	Hdlbp	1110005P14Rik|AA960365|AI118566|D1Ertd101e	high density lipoprotein (HDL) binding protein	protein-coding	6.93357504594414	6.97678728232933	7.49659262763583	6.57583170030693	6.39838593059973	6.57538032239794	6.21033723500787	5.73771232147424	-0.824428425239996	0.000449379091907415	0.0102373107810858
Merged-chr11-116853680-2	chr11	116853588	116853788	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_011358)	promoter-TSS (NM_011358)	-74.0	NM_001361585	69900.0	Mm.348004	NM_178620	ENSMUSG00000020818	Mfsd11	2600014M03Rik	major facilitator superfamily domain containing 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-105717014-4	chr3	105716922	105717122	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175398, exon 2 of 2)	exon (NM_175398, exon 2 of 2)	11564.0	NM_001163356	109050.0	Mm.212591	NM_175398	ENSMUSG00000048458	Fam212b	6530418L21Rik|inka2	family with sequence similarity 212, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-46832175-4	chr1	46832081	46832281	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356416, intron 4 of 10)	intron (NM_001356416, intron 4 of 10)	21437.0	NM_001356416	227059.0	Mm.233889	NM_172653	ENSMUSG00000025986	Slc39a10	2900042E17Rik|5430433I10|Zip10|mKIAA1265	solute carrier family 39 (zinc transporter), member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-86110334-2	chr10	86110234	86110434	+	655.666626	f1_balb.idr|f1_c57bl6.idr	intron (NR_038024, intron 2 of 2)	intron (NR_038024, intron 2 of 2)	14480.0	NR_038024	78170.0	Mm.444790	NR_038024	ENSMUSG00000112493	4930486F22Rik	-	RIKEN cDNA 4930486F22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-120405291-2	chr2	120405191	120405391	+	578.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172672, intron 1 of 23)	intron (NM_172672, intron 1 of 23)	-1175.0	NM_001110496	211499.0	Mm.260712	NM_173734	ENSMUSG00000033808	Tmem87a	A930025J12Rik	transmembrane protein 87A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-43848485-4	chr5	43848410	43848610	+	978.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20299.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-34218496-2	chr4	34218396	34218596	+	741.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-168429.0	NM_026293	67652.0	Mm.55848	NM_026293	ENSMUSG00000028264	Spaca1	1700124L11Rik|4930540L03Rik	sperm acrosome associated 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-70091349-4	chr2	70091252	70091452	+	971.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177376, intron 2 of 34)	MLT1B|LTR|ERVL-MaLR	52226.0	NM_177376	329421.0	Mm.99648	NM_177376	ENSMUSG00000042064	Myo3b	A430065P19Rik	myosin IIIB	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-79884133-4	chr7	79884041	79884241	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009682, intron 4 of 5)	L1MB2|LINE|L1	-35931.0	NM_008486	16790.0	Mm.4487	NM_008486	ENSMUSG00000039062	Anpep	AP-M|AP-N|Apn|Cd13|P150	alanyl (membrane) aminopeptidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-88643022-4	chr1	88642923	88643123	+	963.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	59168.0	NM_177305	320982.0	Mm.27968	NM_177305	ENSMUSG00000049866	Arl4c	A630084M22Rik|Arl7|LAK	ADP-ribosylation factor-like 4C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-34257881-2	chr13	34257781	34257981	+	643.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033167, intron 3 of 10)	intron (NM_001033167, intron 3 of 10)	87301.0	NM_001033167	73102.0	Mm.23932	NM_001033167	ENSMUSG00000038267	Slc22a23	3110004L20Rik	solute carrier family 22, member 23	protein-coding	-0.953721354153451	-1.41025554057125	-1.42001056191158	-1.42802362688808	-1.44024889148474	-1.40814158675276	-1.41780223890411	-1.42658929208844	-2.11310844444413	0.543369238581748	1
Merged-chr10-75664485-2	chr10	75664385	75664585	+	770.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172549, intron 29 of 36)	intron (NM_172549, intron 29 of 36)	-20477.0	NM_027890	71733.0	Mm.247956	NM_027890	ENSMUSG00000006342	Susd2	1200011D11Rik	sushi domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-17464339-2	chr6	17464239	17464439	+	942.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008591, intron 1 of 21)	intron (NM_008591, intron 1 of 21)	382.0	NM_008591	17295.0	Mm.86844	NM_008591	ENSMUSG00000009376	Met	AI838057|HGF|HGFR|Par4|c-Met	met proto-oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-120463956-6	chr6	120463815	120464015	+	974.111084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008359, intron 1 of 12)	intron (NM_008359, intron 1 of 12)	718.0	NM_008359	16172.0	Mm.4481	NM_008359	ENSMUSG00000002897	Il17ra	AW538159|Cdw217|Il17r|VDw217	interleukin 17 receptor A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-54698162-2	chr12	54698062	54698262	+	729.125	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-2268.0	NM_025456	66266.0	Mm.156440	NM_025456	ENSMUSG00000054302	Eapp	1810011O16Rik	E2F-associated phosphoprotein	protein-coding	-0.86184715803215	-0.850467924689626	-0.855877007649784	-0.557240753789573	-0.297840292658619	-0.847756096193618	-0.855233375917013	-0.857732972888572	1.04780645469694	0.734176246618141	1
Merged-chr11-69939561-2	chr11	69939461	69939661	+	629.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016875, intron 4 of 8)	intron (NM_016875, intron 4 of 8)	3233.0	NM_001347634	53422.0	Mm.29286	NM_016875	ENSMUSG00000018554	Ybx2	Msy2	Y box protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135237534-2	chr4	135237434	135237634	+	922.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013885, intron 2 of 5)	intron (NM_013885, intron 2 of 5)	35226.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-77540858-4	chr10	77540764	77540964	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008404, intron 1 of 15)	intron (NM_008404, intron 1 of 15)	10516.0	NM_008404	16414.0	Mm.1137	NM_008404	ENSMUSG00000000290	Itgb2	2E6|AI528527|Cd18|LAD|LCAMB|Lfa1|MF17	integrin beta 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-143167177-4	chr6	143167086	143167286	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029250)	promoter-TSS (NM_029250)	-44.0	NM_029250	75320.0	Mm.272548	NM_029250	ENSMUSG00000030275	Etnk1	1110061E11Rik|4930555L11Rik|AI195356|AI841245|C80956|D6Ertd3e|EKI1	ethanolamine kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-55335204-3	chr4	55335115	55335315	+	769.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14827.0	NM_009011	19359.0	Mm.196846	NM_009011	ENSMUSG00000028426	Rad23b	0610007D13Rik|AV001138|HR23B|mHR23B|p58	RAD23 homolog B, nucleotide excision repair protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-4768528-4	chr1	4768439	4768639	+	734.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17187.0	NM_001177658	27395.0	Mm.182927	NM_025300	ENSMUSG00000033845	Mrpl15	HSPC145|MRP-L7|Rpml7	mitochondrial ribosomal protein L15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-121721872-4	chr3	121721774	121721974	+	939.4249880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1663.0	NM_010171	14066.0	Mm.273188	NM_010171	ENSMUSG00000028128	F3	AA409063|CD142|Cf-3|Cf3|TF	coagulation factor III	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30061328-2	chr2	30061228	30061428	+	859.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023871)	promoter-TSS (NM_023871)	-668.0	NM_023871	56086.0	Mm.326055	NM_023871	ENSMUSG00000054766	Set	2610030F17Rik|5730420M11Rik|AA407739|I-2PP2A|StF-IT-1|TAF-I	SET nuclear oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-17644681-2	chr16	17644581	17644781	+	881.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_029945, exon 20 of 20)	3' UTR (NM_029945, exon 20 of 20)	-1789.0	NM_001166164	72315.0	Mm.297777	NM_001166164	ENSMUSG00000041617	Ccdc74a	2310015A05Rik	coiled-coil domain containing 74A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-99271351-2	chr5	99271251	99271451	+	674.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-18424.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	1.25216267981861	1.16874690625054	0.525541783601041	0.836582451142028	0.91068054390367	0.910180186296827	0.527452803839614	0.520013071555885	-1.31987251743054	0.420690134880896	1
Merged-chr9-62367862-3	chr9	62367795	62367995	+	850.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009672, intron 1 of 6)	intron (NM_009672, intron 1 of 6)	26552.0	NM_009672	11737.0	Mm.269088	NM_009672	ENSMUSG00000032249	Anp32a	Anp32|I1PP2A|LANP|PHAP1|W91701|pp32	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-151245407-3	chr1	151245314	151245514	+	690.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-99072.0	NM_001359262	117198.0	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-75845207-4	chr14	75845128	75845328	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045294)	promoter-TSS (NR_045294)	-28.0	NM_009429	22070.0	Mm.297482	NM_009429	ENSMUSG00000060126	Tpt1	TCTP|Trt|p21|p23	tumor protein, translationally-controlled 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80031193-2	chr10	80031093	80031293	+	793.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001142701, exon 23 of 23)	3' UTR (NM_001142701, exon 23 of 23)	8466.0	NM_025554	66420.0	Mm.18579	NM_025554	ENSMUSG00000004667	Polr2e	2410021N14Rik|25kDa|AW208866|RPB5|XAP4	polymerase (RNA) II (DNA directed) polypeptide E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166651936-3	chr2	166651828	166652028	+	737.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	61904.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153160870-2	chr2	153160770	153160970	+	632.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133847)	promoter-TSS (NM_133847)	-431.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-8926955-2	chr12	8926855	8927055	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008640, intron 1 of 6)	L1MA6|LINE|L1	5648.0	NM_008640	17775.0	Mm.30071	NM_008640	ENSMUSG00000020585	Laptm4a	AA286466|LAPTM4|MTP|Mtrp|mKIAA0108	lysosomal-associated protein transmembrane 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-87887056-2	chr4	87886956	87887156	+	579.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027326, intron 2 of 10)	intron (NM_027326, intron 2 of 10)	-80733.0	NM_029931	70122.0	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-126102554-4	chr4	126102477	126102677	+	996.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1380.0	NM_028800	74178.0	Mm.440269	NM_028800	ENSMUSG00000042608	Stk40	2310004N11Rik|AI428792	serine/threonine kinase 40	protein-coding	4.07864491706814	4.44047870206215	2.71152146269502	2.62005920870839	4.50280410917779	4.47066135742798	2.89807229781038	4.66808491032495	0.799443075419602	0.183776649968831	0.658587887194156
Merged-chr1-186703703-4	chr1	186703610	186703810	+	973.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001329107, intron 1 of 7)	intron (NM_001329107, intron 1 of 7)	2279.0	NM_009367	21808.0	Mm.18213	NM_009367	ENSMUSG00000039239	Tgfb2	BB105277|Tgf-beta2|Tgfb-2	transforming growth factor, beta 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-142907394-4	chr5	142907305	142907505	+	874.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007393)	promoter-TSS (NM_007393)	-651.0	NM_007393	11461.0	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-34769174-4	chr14	34769082	34769282	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50954.0	NM_008166	14803.0	Mm.121569	NM_008166	ENSMUSG00000041078	Grid1	GluD1|GluRdelta1	glutamate receptor, ionotropic, delta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-114922507-1	chr5	114922407	114922607	+	1000.0	f1_balb.idr	promoter-TSS (NM_145209)	promoter-TSS (NM_145209)	-733.0	NM_001359946	231655.0	Mm.95479	NM_145209	ENSMUSG00000041827	Oasl1	7530414C13Rik|oasl9	2'-5' oligoadenylate synthetase-like 1	protein-coding	0.0794910344588654	1.2089916702857	0.618903673102181	0.0901797263580842	0.0810927712757254	0.334258832229062	0.308705591110817	0.0912940264142342	-2.54899448141237	0.206684185894849	1
Merged-chr18-39446135-4	chr18	39446032	39446232	+	944.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008173, intron 1 of 7)	intron (NM_008173, intron 1 of 7)	41113.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-114692195-2	chr5	114692095	114692295	+	997.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1260.0	NM_019821	56356.0	Mm.275766	NM_019821	ENSMUSG00000011884	Gltp	1110001F24Rik|C76925|C77564	glycolipid transfer protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-130994108-2	chr7	130994008	130994208	+	722.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37968.0	NM_001347632	12945.0	Mm.4138	NM_007769	ENSMUSG00000047517	Dmbt1	CRP|CRP-[a]|CRP-[b]|Crpd|DBMT1|gp300|p80	deleted in malignant brain tumors 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-127250138-4	chr4	127250023	127250223	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6339.0	NM_030252	80284.0	Mm.139607	NM_030252	ENSMUSG00000042380	Smim12	BC003266	small integral membrane protein 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-123399080-4	chr7	123398981	123399181	+	948.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025304, intron 1 of 10)	intron (NM_025304, intron 1 of 10)	-8736.0	NM_001355050	30949.0	Mm.260527	NM_025304	ENSMUSG00000030763	Lcmt1	AL033290|LCMT-1|Lcmt	leucine carboxyl methyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-36826352-1	chr8	36826252	36826452	+	633.0	f0_balb.idr	intron (NM_001194940, intron 4 of 17)	MTD|LTR|ERVL-MaLR	-93298.0	NM_001194941	50768.0	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	-1.50516312850466	-1.47383092096757	-1.48330603914065	-1.19291545288017	-1.3546714919122	-1.47177762333306	-1.48116108007494	-1.48969600423451	-0.709809768853011	0.840354194586821	1
Merged-chr15-3993756-2	chr15	3993656	3993856	+	940.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145930, intron 1 of 5)	intron (NM_145930, intron 1 of 5)	1996.0	NM_145930	106064.0	Mm.21299	NM_145930	ENSMUSG00000041935	AW549877	AI195826	expressed sequence AW549877	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28362039-2	chr7	28361939	28362139	+	564.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001083912, exon 18 of 19)	exon (NM_001083912, exon 18 of 19)	10499.0	NR_028129	100302567.0		NR_028129		AF357399	MBI-142	snoRNA AF357399	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-131293265-4	chr6	131293124	131293324	+	986.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025564)	promoter-TSS (NM_025564)	20.0	NM_001327860	66441.0	Mm.46623	NM_025564	ENSMUSG00000030188	Magohb	2010012C16Rik|Mago|Magoh|Magoh-rs1	mago homolog B, exon junction complex core component	protein-coding	3.2373823501078	3.98384284321812	4.22800288588446	3.94544939030205	4.27166694626384	3.46796303773297	4.50388939520613	3.90194328380648	0.288134737032098	0.550321884313117	0.958882219733107
Merged-chr8-70499452-2	chr8	70499352	70499552	+	952.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_018827, exon 4 of 9)	exon (NM_018827, exon 4 of 9)	6321.0	NM_018827	12931.0	Mm.335584	NM_018827	ENSMUSG00000007888	Crlf1	CLF-1|CRLM-3|CRLM3|NR6|NR6.1	cytokine receptor-like factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-121733995-4	chr5	121733913	121734113	+	892.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009125, intron 1 of 24)	intron (NM_009125, intron 1 of 24)	-4519.0	NM_001359153	20239.0	Mm.260900	NM_009125	ENSMUSG00000042605	Atxn2	9630045M23Rik|ATX2|AW544490|Sca2	ataxin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80576531-4	chr10	80576436	80576636	+	988.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_078477, intron 1 of 1)	C-rich|Low_complexity|Low_complexity	760.0	NM_078477	118445.0	Mm.41513	NM_078477	ENSMUSG00000035397	Klf16	AI843742|BTEB4|DRRF	Kruppel-like factor 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-11709559-4	chr16	11709458	11709658	+	943.633301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028964, intron 18 of 20)	intron (NM_028964, intron 18 of 20)	-70144.0	NR_126430	73761.0	Mm.39183	NR_126430		4833415N18Rik	-	RIKEN cDNA 4833415N18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-67252328-1	chr17	67252228	67252428	+	549.0	f1_balb.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	102131.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	1.44849697820621	0.678196558378243	0.666663396464107	0.657671085973345	1.08256675405898	1.37287213428107	0.873843917063614	1.55668375612432	1.37949353579814	0.367737853317988	0.862661267523493
Merged-chr16-31022458-4	chr16	31022355	31022555	+	926.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198626, intron 2 of 3)	intron (NM_198626, intron 2 of 3)	58977.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-45320471-4	chr4	45320356	45320556	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_025513, exon 1 of 4)	exon (NM_025513, exon 1 of 4)	147.0	NM_025513	66362.0	Mm.275788	NM_025513	ENSMUSG00000028322	Exosc3	2310005D06Rik|AI593501|Rrp40	exosome component 3	protein-coding	2.33865499300867	2.89187533007187	2.53183203697156	1.81629352531847	2.2603364089858	1.93372724772654	2.32809072311027	2.25845950419382	-0.574412622704111	0.49434578703867	0.935679785535167
Merged-chr11-107451260-4	chr11	107451133	107451333	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 1 of 9)	intron (NR_153311, intron 1 of 9)	19487.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-79532872-4	chr3	79532779	79532979	+	893.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162999, intron 1 of 16)	intron (NM_001162999, intron 1 of 16)	34800.0	NM_001162999	329679.0	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-46597670-4	chr18	46597594	46597794	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010120)	promoter-TSS (NM_010120)	-10.0	NM_010120	13664.0	Mm.262037	NM_010120	ENSMUSG00000057561	Eif1a	C76390|Ef1a|Eftu|Eif4c|eIF-1A|eIF-4C	eukaryotic translation initiation factor 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-120120512-2	chr10	120120412	120120612	+	703.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7547.0	NM_080446	117599.0	Mm.214703	NM_080446	ENSMUSG00000020228	Helb	AI447783|D10Ertd664e	helicase (DNA) B	protein-coding	-1.8418762459921	-1.8125357239735	-1.82140854000656	-1.82869693527674	-1.56059678980999	-1.8106129477253	-1.81939992894326	-1.82739231600805	1.3620893379502	0.699511506488145	1
Merged-chr11-121745691-4	chr11	121745554	121745754	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43227.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-7824211-3	chr1	7824114	7824314	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	735294.0	NM_183028	319263.0	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101965180-2	chr11	101965080	101965280	+	700.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_024449, intron 1 of 1)	intron (NM_024449, intron 1 of 1)	1835.0	NM_024449	74499.0	Mm.265602	NM_024449	ENSMUSG00000001494	Sost	5430411E23Rik	sclerostin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-116076530-5	chr4	116076495	116076695	+	946.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153521, intron 1 of 9)	CpG	1326.0	NM_153521	230654.0	Mm.3655	NM_153521	ENSMUSG00000028703	Lrrc41	AA409966|AW555107|D630045E04Rik|D730026A16Rik|MUF1	leucine rich repeat containing 41	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-130660163-3	chr4	130660046	130660246	+	917.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3175.0	NM_030722	80912.0	Mm.440206	NM_030722	ENSMUSG00000028580	Pum1	AA517475|Pumm|mKIAA0099	pumilio RNA-binding family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-88305860-2	chr1	88305760	88305960	+	857.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134252)	promoter-TSS (NM_134252)	-852.0	NM_134252	171382.0	Mm.218753	NM_134252	ENSMUSG00000036251	Trpm8	CMR1|LTRPC6|LTrpC-6|TRPP8|Trp-p8	transient receptor potential cation channel, subfamily M, member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-36145755-3	chr17	36145681	36145881	+	945.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033517, intron 1 of 3)	CpG	763.0	NR_033517	675325.0	Mm.75890	NR_033517	ENSMUSG00000038311	2410017I17Rik	-	RIKEN cDNA 2410017I17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46828583-4	chr8	46828485	46828685	+	959.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008391, intron 6 of 8)	intron (NM_008391, intron 6 of 8)	88840.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-57637830-3	chr10	57637737	57637937	+	823.8222049999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039051, intron 1 of 4)	intron (NM_001039051, intron 1 of 4)	5856.0	NM_001039051	18768.0	Mm.262135	NM_008863	ENSMUSG00000019876	Pkib	Pkibeta|Prkacn2	protein kinase inhibitor beta, cAMP dependent, testis specific	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-86234842-2	chr17	86234742	86234942	+	757.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_011104, intron 1 of 14)	intron (NM_011104, intron 1 of 14)	52336.0	NR_045435	72104.0	Mm.443401	NR_045435	ENSMUSG00000100738	2010106C02Rik	-	RIKEN cDNA 2010106C02 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-181454580-2	chr2	181454480	181454680	+	591.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028125, intron 1 of 2)	intron (NM_028125, intron 1 of 2)	4846.0	NM_028125	72147.0	Mm.486504	NM_027656	ENSMUSG00000027583	Zbtb46	2610019F01Rik|4933406L05Rik|BZEL|Btbd4	zinc finger and BTB domain containing 46	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-26169328-4	chr8	26169225	26169425	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11156.0	NM_199042	73754.0	Mm.383241	NM_199042	ENSMUSG00000037214	Thap1	4833431A01Rik|AW490810	THAP domain containing, apoptosis associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-111957906-4	chr10	111957816	111958016	+	899.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14779.0	NM_178610	52705.0	Mm.34606	NM_178610	ENSMUSG00000063334	Krr1	2610511F02Rik|AI255219|AI428520|D10Ertd773e|Hrb2	KRR1, small subunit (SSU) processome component, homolog (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-3620404-2	chr8	3620304	3620504	+	670.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026156, intron 1 of 18)	intron (NM_026156, intron 1 of 18)	892.0	NM_026156	67439.0	Mm.23739	NM_026156	ENSMUSG00000019470	Xab2	0610041O14Rik|AV025587	XPA binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70552800-2	chr11	70552700	70552900	+	618.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_008876, exon 14 of 25)	exon (NM_008876, exon 14 of 25)	-10081.0	NM_001045964	50932.0	Mm.42967	NM_016713	ENSMUSG00000020827	Mink1	B55|MINK|Map4k6|Ysk2	misshapen-like kinase 1 (zebrafish)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81130891-2	chr10	81130791	81130991	+	613.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5380.0	NM_010731	16969.0	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-75876156-1	chr16	75876056	75876256	+	541.0	f0_balb.idr	intron (NM_023380, intron 5 of 7)	intron (NM_023380, intron 5 of 7)	33110.0	NM_023380	67742.0	Mm.131406	NM_023380	ENSMUSG00000022876	Samsn1	4930571B16Rik|930571B16Rik|Hacs1|SLy2	SAM domain, SH3 domain and nuclear localization signals, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98954175-3	chr11	98954114	98954314	+	840.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009024, intron 2 of 8)	intron (NM_009024, intron 2 of 8)	-6257.0	NM_001176528	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-108397779-2	chr6	108397679	108397879	+	643.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 30 of 61)	intron (NM_010585, intron 30 of 61)	-91964.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-66395353-2	chr6	66395253	66395453	+	842.0	f0_balb.idr|f0_c57.idr	Intergenic	MLT2F|LTR|ERVL	122848.0	NR_136927	102633773.0	Mm.272086	NR_136927	ENSMUSG00000107653	Gm31520	-	sterol-C5-desaturase pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3892891-4	chr12	3892781	3892981	+	984.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153743, intron 1 of 17)	intron (NM_153743, intron 1 of 17)	1137.0	NM_153743	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-106279615-1	chr6	106279515	106279715	+	611.0	f0_balb.idr	intron (NM_001109749, intron 5 of 25)	intron (NM_001109749, intron 5 of 25)	160850.0	NM_001109751	269784.0	Mm.321683	NM_173004	ENSMUSG00000064293	Cntn4	9630050B05|Axcam|BIG-2	contactin 4	protein-coding	1.57204422887274	1.3786494770042	1.53852681701112	1.92464484852058	1.94142938834486	1.93965284399021	2.7641619525505	1.07389281013251	1.23893887588398	0.253151636722968	0.750819051763885
Merged-chr4-58441217-1	chr4	58441117	58441317	+	555.0	f0_balb.idr	promoter-TSS (NR_037278)	promoter-TSS (NR_037278)	-119.0	NR_037278	100526502.0		NR_037278	ENSMUSG00000093293	Mir3095	mir-3095|mmu-mir-3095	microRNA 3095	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-35334479-2	chr7	35334379	35334579	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027897, intron 1 of 14)	CpG	242.0	NM_027897	52428.0	Mm.286600	NM_027897	ENSMUSG00000030494	Rhpn2	1300002E07Rik|AA536890|C85860|D7Ertd784e	rhophilin, Rho GTPase binding protein 2	protein-coding	0.358840670450922	0.030386665139799	0.0258736590340959	0.41187442560053	0.366817426592572	0.0314077314751966	0.0268666928548457	0.417380277679181	0.0348560535760958	0.986867547413466	1
Merged-chr10-21847201-4	chr10	21847125	21847325	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34959.0	NM_001161845	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117897378-4	chr10	117897269	117897469	+	940.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-28090.0	NR_045342	71067.0	Mm.410793	NR_045342	ENSMUSG00000112500	4933411E08Rik	-	RIKEN cDNA 4933411E08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124699141-2	chr6	124699041	124699241	+	659.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_149320, intron 2 of 11)	ID4_|SINE|ID	13037.0	NM_013536	14791.0	Mm.6390	NM_013536	ENSMUSG00000004268	Emg1	C2f|Grcc2f	EMG1 N1-specific pseudouridine methyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-155784261-4	chr4	155784195	155784395	+	900.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001033394, exon 2 of 2)	exon (NM_001033394, exon 2 of 2)	1579.0	NM_001033394	320587.0	Mm.384382	NM_001033394	ENSMUSG00000073680	Tmem88b	A230069A22Rik	transmembrane protein 88B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-157576137-3	chr3	157576035	157576235	+	943.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359745, intron 1 of 3)	intron (NM_001359745, intron 1 of 3)	9243.0	NM_011196	19218.0	Mm.30424	NM_011196	ENSMUSG00000040016	Ptger3	EP3|Pgerep3|Ptgerep3	prostaglandin E receptor 3 (subtype EP3)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115077615-2	chr11	115077515	115077715	+	725.200012	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13816.0	NM_001163753	58222.0	Mm.143789	NM_021411	ENSMUSG00000020732	Rab37	B230331O03Rik|B230354I04Rik	RAB37, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-149409972-2	chr6	149409872	149410072	+	554.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001112796, intron 1 of 7)	intron (NM_001112796, intron 1 of 7)	988.0	NM_009753	12121.0	Mm.177181	NM_009753	ENSMUSG00000003452	Bicd1	B830009D06Rik|bic-D 1	BICD cargo adaptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-100422215-3	chr15	100422085	100422285	+	877.888855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008732, intron 1 of 16)	intron (NM_008732, intron 1 of 16)	870.0	NM_001146161	18174.0	Mm.234608	NM_008732	ENSMUSG00000023030	Slc11a2	DCT1|DMT1|Nramp2|mk|van	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2	protein-coding	1.04177599548808	0.752805419661138	0.218407709819954	0.212542659116238	0.904918395788358	0.227656569121109	0.220078280406402	0.213569694646936	-0.976818985560038	0.635919133906135	1
Merged-chr9-32517489-2	chr9	32517389	32517589	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008026, intron 1 of 8)	intron (NM_008026, intron 1 of 8)	23963.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-46360507-4	chr2	46360394	46360594	+	998.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	663889.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-120901847-4	chr7	120901746	120901946	+	920.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001267710, intron 17 of 17)	ORR1E|LTR|ERVL-MaLR	-15898.0	NM_025298	26939.0	Mm.193632	NM_025298	ENSMUSG00000030880	Polr3e	RPC5|Sin	polymerase (RNA) III (DNA directed) polypeptide E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-43752581-4	chr13	43752442	43752642	+	968.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER57D|LTR|ERV1	-32570.0	NM_009856	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	2.32945860248272	2.10721841939568	2.66199963540765	3.66192185182751	2.21537782895138	2.64386371800371	3.09306022469218	3.15613283918425	-0.0480199548528931	0.949949708171523	0.998431161219273
Merged-chr19-58132056-3	chr19	58131933	58132133	+	872.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_181415, exon 29 of 29)	3' UTR (NM_181415, exon 29 of 29)	80866.0	NR_049196	100885835.0		NR_049196	ENSMUSG00000093757	Mir5623	Gm26068|mir-5623|mmu-mir-5623	microRNA 5623	ncRNA	2.3373981428921	2.31418334636924	1.52952905991312	3.43129144669882	2.7870356681352	3.46787769431005	3.2022423778593	3.10403542947619	0.989721699513371	0.200443935824493	0.684238776668547
Merged-chr7-4685131-4	chr7	4685020	4685220	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360629)	promoter-TSS (NM_001360629)	-139.0	NM_024172	66245.0	Mm.6803	NM_024172	ENSMUSG00000063802	Hspbp1	1500019G21Rik	HSPA (heat shock 70kDa) binding protein, cytoplasmic cochaperone 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-19988164-2	chr3	19988064	19988264	+	688.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001276248, intron 17 of 19)	intron (NM_001276248, intron 17 of 19)	31110.0	NM_001276248	12870.0	Mm.13787	NM_007752	ENSMUSG00000003617	Cp	D3Ertd555e	ceruloplasmin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-54040779-1	chr5	54040679	54040879	+	553.0	f0_balb.idr	intron (NM_001081103, intron 1 of 11)	intron (NM_001081103, intron 1 of 11)	42256.0	NM_001081103	116873.0	Mm.265985	NM_054083	ENSMUSG00000039156	Stim2	-	stromal interaction molecule 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-123412094-4	chr4	123412000	123412200	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001167918)	promoter-TSS (NM_001167918)	-189.0	NM_001167918	442834.0	Mm.483803	NM_001167918		D830031N03Rik	Kiaa0754|mKIAA0754	RIKEN cDNA D830031N03 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30801206-3	chr2	30801104	30801304	+	851.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_198000, exon 1 of 7)	exon (NM_198000, exon 1 of 7)	533.0	NM_198000	73598.0	Mm.34166	NM_198000	ENSMUSG00000044320	1700001O22Rik	1700113K14Rik|4930549G18Rik	RIKEN cDNA 1700001O22 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-68907840-4	chr2	68907759	68907959	+	947.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347161, intron 1 of 10)	L1MB3|LINE|L1	46418.0	NM_001347161	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-96961265-1	chr11	96961165	96961365	+	860.0	f1_balb.idr	exon (NM_001080964, exon 3 of 7)	exon (NM_001080964, exon 3 of 7)	16423.0	NM_030220	78912.0	Mm.491183	NM_030220	ENSMUSG00000018678	Sp2	4930480I16Rik|mKIAA0048	Sp2 transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85525621-2	chr12	85525521	85525721	+	811.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	51731.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-8754416-6	chr10	8754478	8754678	+	777.152771	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 9 of 19)	intron (NM_175155, intron 9 of 19)	131492.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	-0.339261254434147	-0.60940714732251	-0.61342067674002	0.217455899446722	-0.620919864562412	-0.60850381486089	-0.612534605555288	-0.615981484429315	-3.47395999702065	0.204364337917474	1
Merged-chr14-55757785-3	chr14	55757662	55757862	+	744.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009894, intron 2 of 4)	intron (NM_009894, intron 2 of 4)	662.0	NM_009894	12684.0	Mm.466766	NM_009894	ENSMUSG00000022219	Cideb	1110030C18Rik|AI790179|CIDE-B	cell death-inducing DNA fragmentation factor, alpha subunit-like effector B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-19160409-2	chr10	19160309	19160509	+	616.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_038021, intron 1 of 3)	intron (NR_038021, intron 1 of 3)	-6829.0	NR_038022	100504265.0	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70861813-2	chr8	70861713	70861913	+	837.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4805.0	NM_032397	84036.0	Mm.32074	NM_032397	ENSMUSG00000002908	Kcnn1	AI854248|KCa2.1|SK1	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-144479908-2	chr7	144479808	144480008	+	688.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001195086, intron 30 of 31)	intron (NM_001195086, intron 30 of 31)	-8973.0	NM_001252572	13043.0	Mm.205601	NM_007803	ENSMUSG00000031078	Cttn	1110020L01Rik|Ems1	cortactin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-59192495-1	chr11	59192395	59192595	+	564.0	f1_balb.idr	promoter-TSS (NM_008193)	promoter-TSS (NM_008193)	-543.0	NM_008193	14923.0	Mm.3624	NM_008193	ENSMUSG00000020444	Guk1	AA409738|AL033299|AL033300|AV026611|Gmk|Guk-1	guanylate kinase 1	protein-coding	1.39981667233489	1.07287066739768	2.42785074083198	1.01889127769586	2.23888051259897	2.71153206250416	1.04969076216595	2.27571544210511	1.37235330493706	0.252367050729925	0.750061212649553
Merged-chr9-55545733-2	chr9	55545633	55545833	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_027397, exon 6 of 6)	3' UTR (NM_027397, exon 6 of 6)	4584.0	NM_027397	104360.0	Mm.273996	NM_027397	ENSMUSG00000032318	Isl2	3110001N10Rik	insulin related protein 2 (islet 2)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-70568245-4	chr18	70568169	70568369	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311071)	promoter-TSS (NM_001311071)	-23.0	NM_001311071	17191.0	Mm.322	NM_010773	ENSMUSG00000024513	Mbd2	MBD2a	methyl-CpG binding domain protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139301256-2	chr5	139301156	139301356	+	796.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172723, intron 3 of 10)	(CCCTG)n|Simple_repeat|Simple_repeat	24208.0	NM_172723	231821.0	Mm.297819	NM_172723	ENSMUSG00000056413	Adap1	4930431P11Rik|Centa1|GC1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-99490050-4	chr6	99489950	99490150	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347345, intron 1 of 19)	intron (NM_001347345, intron 1 of 19)	30943.0	NM_001347345	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-97760145-3	chr15	97760087	97760287	+	883.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177810, intron 6 of 27)	intron (NM_001177810, intron 6 of 27)	7479.0	NM_001177810	223864.0	Mm.24028	NM_144850	ENSMUSG00000022469	Rapgef3	2310016P22Rik|9330170P05Rik|Epac|Epac1	Rap guanine nucleotide exchange factor (GEF) 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-79290799-4	chr14	79290715	79290915	+	982.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025427, intron 3 of 4)	intron (NM_025427, intron 3 of 4)	10820.0	NM_025427	66214.0	Mm.29811	NM_025427	ENSMUSG00000022018	Rgcc	1190002H23Rik|Rgc-32|Rgc32	regulator of cell cycle	protein-coding	2.69318125478573	2.55054899697472	2.35270161990145	2.40120730989051	2.19621171240591	2.31300417158515	1.92349570202368	2.51460165014204	-0.584036032685638	0.46496281248726	0.922521920152562
Merged-chr7-136377957-4	chr7	136377865	136378065	+	902.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	UCON26|Unknown|Unknown	-28550.0	NR_040459	330664.0	Mm.127762	NR_040459	ENSMUSG00000109633	C230079O03Rik	C230079O03	RIKEN cDNA C230079O03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-120129983-2	chr2	120129883	120130083	+	885.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133838, intron 2 of 5)	intron (NM_133838, intron 2 of 5)	24592.0	NM_133838	98878.0	Mm.132226	NM_133838	ENSMUSG00000027293	Ehd4	2210022F10Rik|AI197390|AI846352|AV006278|Past2	EH-domain containing 4	protein-coding	0.483763671106621	0.0924741867975708	0.0884962124779602	0.223933040867644	0.492502480717593	0.0933774476989382	0.0893694946821145	0.547039576700062	0.767964493904273	0.714449293225062	1
Merged-chr4-127077471-4	chr4	127077370	127077570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285885)	promoter-TSS (NM_001285885)	87.0	NM_001285887	100177.0	Mm.276096	NM_177462	ENSMUSG00000042408	Zmym6	9330177P20Rik|AI593204|AI661340|D4Wsu24e|Zfp258	zinc finger, MYM-type 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117860534-4	chr10	117860442	117860642	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14568.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139382929-4	chr5	139382793	139382993	+	974.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030258, intron 1 of 1)	intron (NM_030258, intron 1 of 1)	2254.0	NM_030258	80290.0	Mm.270003	NM_030258	ENSMUSG00000044197	Gpr146	BC003323|D830046C22Rik|PGR8	G protein-coupled receptor 146	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-135585229-3	chr1	135585121	135585321	+	731.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_173437, exon 1 of 29)	exon (NM_173437, exon 1 of 29)	134.0	NM_173437	215690.0	Mm.34977	NM_173437	ENSMUSG00000009418	Nav1	9530089B19|9930003A20Rik|C230080M11Rik|Gm38399|Pomfil3|Unc53h1|mKIAA1151|steerin-1	neuron navigator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24937044-4	chr17	24936912	24937112	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163447)	promoter-TSS (NM_001163447)	-35.0	NM_013931	30957.0	Mm.43081	NM_013931	ENSMUSG00000024163	Mapk8ip3	BB120594|D17Wsu15e|JIP-3|JSAP1|JSAP1a|JSAP1b|JSAP1c|JSAP1d|Jip3|Syd2|mKIAA1066	mitogen-activated protein kinase 8 interacting protein 3	protein-coding	6.08524312569593	6.50266943773907	5.93813039237878	5.9454170847974	6.15353668637738	6.20592162847689	6.61259250735991	5.84700643633285	0.104794198263501	0.663906715660785	0.991727188060023
Merged-chr11-28867971-2	chr11	28867871	28868071	+	889.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_146015, exon 4 of 11)	exon (NM_146015, exon 4 of 11)	14766.0	NM_146015	216616.0	Mm.44176	NM_146015	ENSMUSG00000020467	Efemp1	-	epidermal growth factor-containing fibulin-like extracellular matrix protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-28990388-4	chr19	28990287	28990487	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302443)	promoter-TSS (NM_001302443)	35.0	NM_025950	67072.0	Mm.78875	NM_025950	ENSMUSG00000024780	Cdc37l1	2700033A15Rik|BB159850|Cdc37l|Harc	cell division cycle 37-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-132388476-2	chr7	132388376	132388576	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-71248.0	NM_029935	77590.0	Mm.213582	NM_029935	ENSMUSG00000030930	Chst15	4631426J05Rik|BRAG|GalNAc4S-6ST|GalNAcS-6ST|MAd5|mKIAA0598	carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-116205653-4	chr3	116205536	116205736	+	843.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47848.0	NM_022427	64378.0	Mm.40025	NM_022427	ENSMUSG00000068696	Gpr88	AW061286|Strg	G-protein coupled receptor 88	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-155894723-1	chr4	155894623	155894823	+	576.0	f1_balb.idr	intron (NM_207223, intron 1 of 24)	intron (NM_207223, intron 1 of 24)	2848.0	NM_207223	140500.0	Mm.219591	NM_207223	ENSMUSG00000029033	Acap3	Centb5|Kiaa1716-hp|mKIAA1716	ArfGAP with coiled-coil, ankyrin repeat and PH domains 3	protein-coding	-1.20406370813143	-1.56956373024278	-1.57884638916872	-1.58647144159385	-1.598104728449	-1.56755213932999	-1.57674499865798	-1.58510656085539	-1.70745470802464	0.626337835847419	1
Merged-chr6-129049287-4	chr6	129049197	129049397	+	998.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_024263, intron 1 of 4)	intron (NR_024263, intron 1 of 4)	3396.0	NM_153094	232408.0	Mm.259262	NM_153094	ENSMUSG00000030154	Klrb1f	A630024B12Rik|Nkr-p1f|Nkrp1-f|Nkrp1f	killer cell lectin-like receptor subfamily B member 1F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-94045341-3	chr6	94045246	94045446	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029850, intron 1 of 23)	RMER15|LTR|ERVL	-131656.0	NM_001083320	14924.0	Mm.217216	NM_010367	ENSMUSG00000045095	Magi1	AIP3|BAP1|Baiap1|Gukmi1|MAGI1c|Magi-1|TNRC19|WWP3|mKIAA4129	membrane associated guanylate kinase, WW and PDZ domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-43579207-2	chr10	43579107	43579307	+	679.083374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009846)	promoter-TSS (NM_009846)	38.0	NM_009846	12484.0	Mm.29742	NM_009846	ENSMUSG00000047139	Cd24a	Cd24|HSA|Ly-52|nectadrin	CD24a antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-111178734-4	chr5	111178635	111178835	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001267622, intron 5 of 22)	ORR1E|LTR|ERVL-MaLR	-151962.0	NM_001301644	56305.0	Mm.200516	NM_019640	ENSMUSG00000050017	Pitpnb	PI-TP-beta	phosphatidylinositol transfer protein, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-133710508-2	chr7	133710408	133710608	+	780.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360164)	promoter-TSS (NM_001360164)	-61.0	NR_153415	22276.0	Mm.3160	NM_009479	ENSMUSG00000030979	Uros	AI415298|UROIIIS|Uros3	uroporphyrinogen III synthase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-92880911-2	chr16	92880811	92881011	+	902.416626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54837.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-81110353-4	chr13	81110242	81110442	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 87 of 89)	intron (NM_054053, intron 87 of 89)	146268.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-6889631-4	chr13	6889560	6889760	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	-240889.0	NM_001291071	56421.0	Mm.273874	NM_019703	ENSMUSG00000021196	Pfkp	1200015H23Rik|9330125N24Rik|ATP-PFK|PFK-C|PFK-P	phosphofructokinase, platelet	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-138172896-1	chr5	138172796	138172996	+	544.0	f1_balb.idr	intron (NM_021392, intron 3 of 14)	intron (NM_021392, intron 3 of 14)	875.0	NM_021392	11781.0	Mm.113205	NM_021392	ENSMUSG00000019518	Ap4m1	4930443L05Rik|Ap4m4	adaptor-related protein complex AP-4, mu 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-50674515-4	chr2	50674405	50674605	+	903.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER34A|LTR|ERV1	-235179.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-83729725-2	chr10	83729625	83729825	+	895.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145198, intron 1 of 5)	intron (NM_001145198, intron 1 of 5)	6860.0	NM_001145198	69784.0	Mm.271188	NM_001145198	ENSMUSG00000087651	1500009L16Rik	2700050C19Rik|OCC-1	RIKEN cDNA 1500009L16 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-133776784-4	chr7	133776692	133776892	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025850)	promoter-TSS (NM_025850)	11.0	NM_001286032	101437.0	Mm.199223	NM_133941	ENSMUSG00000030986	Dhx32	3110079L04Rik|4732469F02Rik|AA408140|Ddx32|muDDX32	DEAH (Asp-Glu-Ala-His) box polypeptide 32	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-40499501-4	chr10	40499382	40499582	+	976.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70880.0	NM_027572	70840.0	Mm.332570	NM_027572	ENSMUSG00000019834	Slc22a16	4921504E14Rik|CT2|FLIPT2|OCT6|OKB1	solute carrier family 22 (organic cation transporter), member 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-138531750-4	chr3	138531652	138531852	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007917, intron 2 of 7)	intron (NM_007917, intron 2 of 7)	4484.0	NM_001313980	13684.0	Mm.3941	NM_007917	ENSMUSG00000028156	Eif4e	EG668879|Eif4e-ps|If4e|eIF-4E	eukaryotic translation initiation factor 4E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-92864304-4	chr16	92864207	92864407	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38233.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-53706673-2	chr1	53706574	53706774	+	622.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252070, intron 1 of 65)	CpG	110.0	NM_001252070	627872.0	Mm.184692	NM_001252070	ENSMUSG00000096141	Dnah7a	Dnahc7|Dnahc7a|Gm992	dynein, axonemal, heavy chain 7A	protein-coding	0.622374654780711	0.238187189072271	1.13255923451455	0.224584044824792	0.376409126019841	0.23990552523247	0.852401034931313	0.225625419873346	-0.926684396829949	0.629560493945132	1
Merged-chr15-76825720-4	chr15	76825637	76825837	+	902.7333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-7567.0	NM_198420	223666.0	Mm.322931	NM_198420	ENSMUSG00000033697	Arhgap39	9530053N22|AI843066|D15Wsu169e|Kiaa1688|Porf-2	Rho GTPase activating protein 39	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-29744720-2	chr2	29744620	29744820	+	993.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16808.0	NM_001177392	433416.0	Mm.330112	NM_001034887	ENSMUSG00000075425	Gm13547	-	predicted gene 13547	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84198563-4	chr8	84198465	84198665	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-9953.0	NR_029740	387216.0		NR_029740	ENSMUSG00000065611	Mir23a	Mirn23a|mir-23a|mmu-mir-23a	microRNA 23a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180279999-2	chr1	180279899	180280099	+	710.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23699.0	NM_001128605	19165.0	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-66185059-4	chr14	66184962	66185162	+	896.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 5 of 30)	intron (NM_001162366, intron 5 of 30)	28762.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71310102-3	chr17	71310025	71310225	+	741.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357337, intron 2 of 7)	intron (NM_001357337, intron 2 of 7)	886.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-40701890-3	chr9	40701786	40701986	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133733, intron 1 of 6)	RLTR12D|LTR|ERVK	15922.0	NM_133733	71566.0	Mm.280560	NM_133733	ENSMUSG00000032024	Clmp	9030425E11Rik|ACAM|ASP5|AW557819	CXADR-like membrane protein	protein-coding	3.11152270901528	3.89896019044987	2.74174977692947	3.19153607769147	4.56893639343871	4.39700992801121	5.05867370658026	4.3376729082679	1.82140210434199	0.000139106226672533	0.00403139253047596
Merged-chr19-6933983-4	chr19	6933905	6934105	+	805.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008431, intron 1 of 6)	CpG	510.0	NM_008431	16528.0	Mm.12894	NM_008431	ENSMUSG00000024957	Kcnk4	Catsperz|MLZ-622|TRAAK|TRAAKt|Tex40	potassium channel, subfamily K, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64862086-2	chr5	64861986	64862186	+	648.083374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58563.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-94834311-2	chr17	94834211	94834411	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045964, intron 1 of 3)	intron (NR_045964, intron 1 of 3)	488.0	NR_045964	100038746.0	Mm.456686	NR_045963	ENSMUSG00000066057	Gm1976	100038868	predicted gene 1976	ncRNA	-1.84303373260285	-1.81303463126392	-1.82210660711932	-1.82955859819738	-1.84092785115721	-1.81106869625141	-1.8200529106377	-1.54273750312762	1.50114612804783	0.670102668014672	1
Merged-chr17-63803780-2	chr17	63803680	63803880	+	656.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60201.0	NM_001037997	14158.0	Mm.23039	NM_008000	ENSMUSG00000000127	Fer	AV082135|C330004K01Rik|Fert|Fert2	fer (fms/fps related) protein kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-13084306-2	chr15	13084206	13084406	+	653.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007666, intron 2 of 11)	intron (NM_007666, intron 2 of 11)	89369.0	NM_007666	12563.0	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-60524355-1	chr18	60524255	60524455	+	857.0	f1_balb.idr	Intergenic	Intergenic	-1799.0	NM_026302	67665.0	Mm.272801	NM_026302	ENSMUSG00000024603	Dctn4	1110001K06Rik|4930547K17Rik|C130039E17Rik|p62	dynactin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124082545-2	chr5	124082445	124082645	+	665.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019875, intron 4 of 11)	intron (NM_019875, intron 4 of 11)	13253.0	NM_019875	56325.0	Mm.254839	NM_019875	ENSMUSG00000029408	Abcb9	TAPL|mKIAA1520	ATP-binding cassette, sub-family B (MDR/TAP), member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120709049-2	chr11	120708949	120709149	+	610.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026877, intron 14 of 15)	intron (NM_026877, intron 14 of 15)	4718.0	NM_016665	20892.0	Mm.259716	NM_016665	ENSMUSG00000025144	Cenpx	Stra13	centromere protein X	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124845605-1	chr6	124845505	124845705	+	550.0	f1_c57bl6.idr	exon (NM_013534, exon 11 of 15)	exon (NM_013534, exon 11 of 15)	-5330.0	NM_013530	14695.0	Mm.68889	NM_013530	ENSMUSG00000023439	Gnb3	Gnb-3	guanine nucleotide binding protein (G protein), beta 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-34417696-2	chr10	34417596	34417796	+	626.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_176968, intron 1 of 11)	MIR|SINE|MIR	855.0	NM_176968	319638.0	Mm.73467	NM_176968	ENSMUSG00000039480	Nt5dc1	6030401B09Rik|AW987726|Nt5c2l1	5'-nucleotidase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-83949956-4	chr12	83949861	83950061	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023633)	promoter-TSS (NM_023633)	-647.0	NM_023633	71952.0	Mm.251483	NM_023633	ENSMUSG00000046791	Riox1	2410016O06Rik|MAPJD|NO66	ribosomal oxygenase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-10989593-2	chr16	10989493	10989693	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019980, intron 1 of 3)	intron (NM_019980, intron 1 of 3)	3528.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-93817939-3	chr1	93817847	93818047	+	863.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025454, intron 7 of 7)	intron (NM_025454, intron 7 of 7)	-7293.0	NM_178882	98314.0	Mm.383401	NM_178882	ENSMUSG00000073609	D2hgdh	AA408776|AA408778|AI325464	D-2-hydroxyglutarate dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-63885337-1	chr7	63885237	63885437	+	559.0	f1_c57bl6.idr	Intergenic	Intergenic	-31520.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-10488055-3	chr16	10487936	10488136	+	938.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007575)	promoter-TSS (NM_007575)	-142.0	NM_007575	12265.0	Mm.249560	NM_007575	ENSMUSG00000022504	Ciita	C2ta|EG669998|Gm9475|Mhc2ta	class II transactivator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-129423880-4	chr6	129423778	129423978	+	956.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172732, exon 6 of 6)	3' UTR (NM_172732, exon 6 of 6)	15016.0	NM_001205364	232414.0	Mm.391518	NM_172732	ENSMUSG00000046080	Clec9a	9830005G06Rik|DNGR-1	C-type lectin domain family 9, member a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72748649-4	chr6	72748536	72748736	+	883.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001079822, intron 3 of 12)	intron (NM_001079822, intron 3 of 12)	40409.0	NM_001079822	21415.0	Mm.440067	NM_009332	ENSMUSG00000055799	Tcf7l1	Tcf-3|Tcf3|bHLHb21	transcription factor 7 like 1 (T cell specific, HMG box)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-3500466-4	chr8	3500373	3500573	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053177)	promoter-TSS (NM_053177)	-46.0	NM_053177	94178.0	Mm.8356	NM_053177	ENSMUSG00000004567	Mcoln1	2210015I05Rik|TRPML1|mucolipidin	mucolipin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107667554-1	chr9	107667454	107667654	+	873.0	f1_c57bl6.idr	promoter-TSS (NM_023805)	promoter-TSS (NM_023805)	-155.0	NM_001199217	76257.0	Mm.296560	NM_023805	ENSMUSG00000010064	Slc38a3	0610012J02Rik|D9Ucla2|Nat1|Slc38-3|Sn1|Snat3|mNAT	solute carrier family 38, member 3	protein-coding	1.0960332964107	1.37764044723286	1.56405603094504	0.804396448444121	1.10442916527734	0.83052637299957	1.57821444083021	1.52257139513007	0.214207235956463	0.874194966589154	0.998431161219273
Merged-chr9-37530225-4	chr9	37530121	37530321	+	907.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_136939, intron 1 of 6)	intron (NR_136939, intron 1 of 6)	2132.0	NM_027102	69524.0	Mm.41751	NM_027102	ENSMUSG00000001946	Esam	2310008D05Rik|Esam1|W117m	endothelial cell-specific adhesion molecule	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-98290661-4	chr12	98290582	98290782	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	22047.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129603559-2	chr2	129603460	129603660	+	898.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355160, intron 1 of 7)	intron (NM_001355160, intron 1 of 7)	8098.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	1.36309869469034	1.68049536706033	1.84487795411619	2.04512020193283	1.07748811211733	0.942674242526994	1.63207110595458	0.909640754725664	-2.10655284851559	0.0961582770399373	0.481379836408276
Merged-chr11-119253598-1	chr11	119253498	119253698	+	933.0	f1_balb.idr	intron (NM_175430, intron 14 of 18)	intron (NM_175430, intron 14 of 18)	-14365.0	NM_001159324	14387.0	Mm.4793	NM_008064	ENSMUSG00000025579	Gaa	E430018M07Rik	glucosidase, alpha, acid	protein-coding	-0.156630344075988	0.212091158662633	-0.293253845572406	-0.296815034130243	-0.301850893882091	-0.287601391579171	0.399398283512985	-0.296192763625946	0.326046551072218	0.893799179498036	1
Merged-chr9-55170940-4	chr9	55170860	55171060	+	942.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346658, intron 3 of 12)	intron (NM_001346658, intron 3 of 12)	20877.0	NM_001346658	109161.0	Mm.207894	NM_180600	ENSMUSG00000032307	Ube2q2	3010021M21Rik	ubiquitin-conjugating enzyme E2Q family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-21218113-4	chr5	21217992	21218192	+	985.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153365, intron 6 of 26)	Tigger17a|DNA|TcMar-Tigger	31825.0	NM_001359877	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-160268099-4	chr2	160267997	160268197	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	59397.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28365023-2	chr7	28364923	28365123	+	658.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_138752, intron 11 of 18)	intron (NM_138752, intron 11 of 18)	7639.0	NM_138752	101497.0	Mm.235700	NM_138752	ENSMUSG00000037552	Plekhg2	AI194308|Clg|Cslg	pleckstrin homology domain containing, family G (with RhoGef domain) member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117483331-2	chr8	117483231	117483431	+	779.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14944.0	NM_172285	234779.0	Mm.192699	NM_172285	ENSMUSG00000034330	Plcg2	PLC-gamma-2|PLCgamma2|Plcg-2	phospholipase C, gamma 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-91211252-2	chr1	91211173	91211373	+	861.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016894, intron 2 of 2)	intron (NM_016894, intron 2 of 2)	31451.0	NM_001168392	51801.0	Mm.3272	NM_016894	ENSMUSG00000034353	Ramp1	9130218E19Rik	receptor (calcitonin) activity modifying protein 1	protein-coding	-1.84436392554074	-1.52091821270385	-1.82290882857571	-1.83054882630441	-1.84220491470818	-1.81159244170985	-1.82080331928423	-1.82918127036376	-1.56828060379516	0.655578384384393	1
Merged-chr10-44511227-3	chr10	44511132	44511332	+	915.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52484.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-27191203-2	chr3	27191103	27191303	+	906.4375	f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 1 of 4)	ORR1B2|LTR|ERVL-MaLR	8199.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-109690891-4	chr5	109690810	109691010	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-131917.0	NM_001310694	57914.0	Mm.35771	NM_016715	ENSMUSG00000033467	Crlf2	CRLM2|Ly114|Tpte2|Tslpr	cytokine receptor-like factor 2	protein-coding	5.53718633464008	5.39449518270139	5.58884835500934	4.92728436780611	5.09322832677072	5.20899722067533	6.11825935765847	4.87188673422421	0.0278882795378676	0.933614713592889	0.998431161219273
Merged-chr1-131096995-4	chr1	131096892	131097092	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008551, intron 1 of 9)	CpG	851.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	4.28985428384771	4.56934829519519	5.24040952233413	4.73023775198661	5.03872613070235	4.95154480201878	4.66520711234618	4.83122437551161	0.161011311878258	0.649292979683229	0.985422869512088
Merged-chr1-95613556-3	chr1	95613465	95613665	+	958.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009183, intron 4 of 4)	intron (NM_009183, intron 4 of 4)	54029.0	NM_009183	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-82765079-2	chr10	82765016	82765216	+	845.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010914)	promoter-TSS (NM_010914)	-975.0	NM_010914	18045.0	Mm.245998	NM_010914	ENSMUSG00000020248	Nfyb	AA985999|Cbf-A	nuclear transcription factor-Y beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-29736204-4	chr6	29736075	29736275	+	885.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_176996, exon 1 of 12)	exon (NM_176996, exon 1 of 12)	678.0	NM_176996	319757.0	Mm.29279	NM_176996	ENSMUSG00000001761	Smo	E130215L21Rik|Smoh|bnb|smoothened	smoothened, frizzled class receptor	protein-coding	2.1464397883096	2.63477279516621	2.44072959854014	2.73733716197409	2.16376578520396	1.45955737065026	2.56667208931528	2.38505050331795	-0.664046680179541	0.439844543818921	0.909249686890578
Merged-chr13-41583863-4	chr13	41583688	41583888	+	866.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MEb|LINE|L1	-22428.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-54811901-2	chr3	54811801	54812001	+	924.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-4110.0	NM_133231	170767.0	Mm.185735	NM_133231	ENSMUSG00000036615	Rfxap	5730495K23Rik	regulatory factor X-associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-15890130-4	chr16	15890029	15890229	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_007679)	TTS (NM_007679)	2843.0	NM_007679	12609.0	Mm.347407	NM_007679	ENSMUSG00000071637	Cebpd	c/EBPdelta	CCAAT/enhancer binding protein (C/EBP), delta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-52378605-4	chr2	52378501	52378701	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-39803.0	NM_010889	17996.0	Mm.389247	NM_010889	ENSMUSG00000026950	Neb	AI595938	nebulin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-57116785-4	chr2	57116689	57116889	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001139509, intron 1 of 7)	CpG	-1751.0	NM_013613	18227.0	Mm.3507	NM_013613	ENSMUSG00000026826	Nr4a2	HZF-3|NOT|Nurr1|RNR-1|TINOR|TINUR	nuclear receptor subfamily 4, group A, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-59351097-2	chr19	59350997	59351197	+	574.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR12D|LTR|ERVK	-5317.0	NM_001033222	107368.0	Mm.27250	NM_001033222	ENSMUSG00000074746	Pdzd8	A630041P07Rik|AV329468|AW228944|Pdzk8	PDZ domain containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-34200496-2	chr13	34200396	34200596	+	570.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033167, intron 5 of 10)	intron (NM_001033167, intron 5 of 10)	37532.0	NM_001110515	69666.0	Mm.24788	NM_001101430	ENSMUSG00000071451	Psmg4	PAC-4|mPAC4	proteasome (prosome, macropain) assembly chaperone 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129083712-4	chr2	129083601	129083801	+	911.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027192, intron 5 of 6)	intron (NM_027192, intron 5 of 6)	-17295.0	NM_009086	20017.0	Mm.259078	NM_009086	ENSMUSG00000027395	Polr1b	128kDa|D630020H17Rik|RPA116|RPA135|RPA2|Rpo1-2	polymerase (RNA) I polypeptide B	protein-coding	0.680790918241088	0.98513586284471	2.17046873588422	1.10561737918654	1.19467474169969	0.737906880622305	1.69429750563814	0.928940430996718	-0.651953791691735	0.639618482641945	0.982599433509505
Merged-chr7-19311043-2	chr7	19310943	19311143	+	871.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008036)	promoter-TSS (NM_008036)	-998.0	NM_001347586	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118864298-2	chr9	118864206	118864406	+	569.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 9 of 13)	L1MA5|LINE|L1	-62230.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	2.11210769929893	2.38473666180167	2.89146334072517	3.12320237564589	1.34940439047121	3.4168927268425	2.3196778976856	2.82320356849806	-0.00298840946445882	0.997236207832497	0.999268611847349
Merged-chr14-54756107-2	chr14	54756019	54756219	+	607.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016972, intron 3 of 10)	intron (NM_016972, intron 3 of 10)	25767.0	NM_016972	50934.0	Mm.276831	NM_016972	ENSMUSG00000022180	Slc7a8	AA408822|LAT2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	protein-coding	2.6322791568244	3.03110026244828	2.29600924529217	2.23353614984762	2.37532415240003	2.96607393880142	2.31341937444147	2.24463610273363	-0.173557182809786	0.822651892298066	0.998431161219273
Merged-chr2-124657563-3	chr2	124657444	124657644	+	959.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199241, intron 8 of 17)	intron (NM_199241, intron 8 of 17)	3963.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-75834776-2	chr14	75834671	75834871	+	1000.0	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	10193.0	NR_045294	100043189.0	Mm.426329	NR_045294		Gm4285	-	predicted gene 4285	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-34082749-4	chr15	34082649	34082849	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026002)	promoter-TSS (NM_026002)	30.0	NM_001357925	67154.0	Mm.130883	NM_026002	ENSMUSG00000022255	Mtdh	2610103J23Rik|3D3|3D3/Lyric|AEG-1|AV353288|D8Bwg1112e|Lyric	metadherin	protein-coding	6.92140553791766	6.32078285393461	6.81296757111599	6.40957571402698	6.81279872188593	6.66836532110259	6.33549749739657	6.24959436208069	-0.11434566525835	0.599267832525759	0.972412152372742
Merged-chr4-59783433-3	chr4	59783336	59783536	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013577, intron 1 of 4)	CpG	419.0	NM_001013577	66209.0	Mm.51988	NM_001013577	ENSMUSG00000038544	Inip	1110054O05Rik|2610312O17Rik|AA399876|Ssbip1	INTS3 and NABP interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-21616031-4	chr16	21615956	21616156	+	911.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081366, intron 45 of 46)	intron (NM_001081366, intron 45 of 46)	78609.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-24756590-4	chr6	24756495	24756695	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029848, exon 3 of 5)	exon (NM_029848, exon 3 of 5)	8228.0	NM_029848	77042.0	Mm.66017	NM_029848	ENSMUSG00000029680	Hyal4	4632428M18Rik|CSHY	hyaluronoglucosaminidase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-39496403-2	chr12	39496303	39496503	+	621.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	AT_rich|Low_complexity|Low_complexity	540973.0	NM_007487	11861.0	Mm.12723	NM_007487	ENSMUSG00000047446	Arl4a	AI467555|Arl4	ADP-ribosylation factor-like 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24896501-4	chr17	24896397	24896597	+	958.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019730)	promoter-TSS (NM_019730)	-3.0	NM_019730	79059.0	Mm.430765	NM_019730	ENSMUSG00000073435	Nme3	1810009F08Rik|AI413736|DR-nm23|Ndk3|Nm23-DR|Nm23-M3	NME/NM23 nucleoside diphosphate kinase 3	protein-coding	2.83164344701959	1.43195017699495	2.45945962160462	2.68283362280521	2.7199611429184	1.44012627632619	2.47899905811084	2.696731078647	-0.0576138975592701	0.950831302991352	0.998431161219273
Merged-chr16-87700068-4	chr16	87699960	87700160	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007520, intron 1 of 4)	intron (NM_007520, intron 1 of 4)	1106.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127542132-1	chr10	127542032	127542232	+	821.0	f1_balb.idr	intron (NM_008512, intron 79 of 88)	intron (NM_008512, intron 79 of 88)	-7573.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	2.76855610931669	3.90481006232019	3.90700118474028	2.51269364341506	2.53320372067257	2.54064986367324	4.53009421878725	4.77339000468868	0.805972715811005	0.247323504876942	0.746700405514229
Merged-chr19-47179045-6	chr19	47178896	47179096	+	838.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_021360, exon 1 of 6)	5' UTR (NM_021360, exon 1 of 6)	176.0	NM_021360	18011.0	Mm.313651	NM_021360	ENSMUSG00000006435	Neurl1a	2410129E16Rik|AI450910|AI481072|Neu1|Neur1|Neurl|Neurl1|Nlz|Rnf67	neuralized E3 ubiquitin protein ligase 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-70745580-2	chr17	70745480	70745680	+	757.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347411, intron 9 of 14)	intron (NM_001347411, intron 9 of 14)	101197.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	-1.17367364971587	-1.14665061133654	-1.15856004380685	-1.16834280623128	-1.17310571790619	-1.14406978763884	-0.42938571406771	-1.16659169643457	2.89727187181404	0.396361616615464	1
Merged-chr8-117577189-3	chr8	117577065	117577265	+	822.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172285, intron 9 of 32)	ORR1E|LTR|ERVL-MaLR	78890.0	NM_172285	234779.0	Mm.192699	NM_172285	ENSMUSG00000034330	Plcg2	PLC-gamma-2|PLCgamma2|Plcg-2	phospholipase C, gamma 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-13575366-2	chr8	13575266	13575466	+	662.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 22 of 23)	intron (NM_009025, intron 22 of 23)	-12905.0	NM_001080781	66501.0	Mm.46136	NM_025601	ENSMUSG00000031452	1700029H14Rik	-	RIKEN cDNA 1700029H14 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-77916579-2	chr9	77916479	77916679	+	809.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134255)	promoter-TSS (NM_134255)	-786.0	NM_134255	68801.0	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-23890912-2	chr5	23890770	23890970	+	736.375	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38637.0	NR_028536	100217436.0		NR_028536		Snord93	Gm22397|MBII-336	small nucleolar RNA, C/D box 93	snoRNA	-0.833459818380371	-0.821132012327172	-0.825778240616309	-0.82865801136478	-0.671453285421032	-0.818080273044482	0.00822697114283577	-0.828154234050659	3.33227495478691	0.24496204007974	1
Merged-chr4-154935192-4	chr4	154935111	154935311	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7134.0	NM_178931	230979.0	Mm.215147	NM_178931	ENSMUSG00000042333	Tnfrsf14	Atar|HveA|Hvem|Tnfrs14	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	protein-coding	5.17708227052493	5.53342666357109	5.18421509593005	5.53694327973155	5.16089104909162	5.10916803159612	5.49753918701304	4.48931544497903	-0.301245898607336	0.337162813838433	0.83703930093451
Merged-chr5-75154786-2	chr5	75154711	75154911	+	804.0	f0_balb.idr|f1_balb.idr	intron (NM_001347719, intron 1 of 15)	intron (NM_001347719, intron 1 of 15)	-1355.0	NM_001083316	18595.0	Mm.221403	NM_011058	ENSMUSG00000029231	Pdgfra	AI115593|CD140a|Pdgfr-2	platelet derived growth factor receptor, alpha polypeptide	protein-coding	0.101038144662471	0.123357441094777	0.116105246278439	0.110470964495771	0.264777299299408	0.340290259803174	0.744528153230042	1.06043514703865	4.28447806140748	0.0282768287661562	1
Merged-chr7-19860607-2	chr7	19860507	19860707	+	672.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033419, intron 1 of 5)	B1_Mur3|SINE|Alu	692.0	NM_001033419	330483.0	Mm.260192	NM_001033419	ENSMUSG00000014686	Ceacam16	Gm769	carcinoembryonic antigen-related cell adhesion molecule 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-33358870-4	chr17	33358760	33358960	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207541)	promoter-TSS (NM_207541)	18.0	NM_207541	224694.0	Mm.170029	NM_207541	ENSMUSG00000003929	Zfp81	AA409460|AA409461|C330034P10Rik|D330034E10Rik|Hszfp36|KRAB13|Zfp78	zinc finger protein 81	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-7383712-2	chr19	7383612	7383812	+	960.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001167831)	promoter-TSS (NM_001167831)	-686.0	NM_001167831	68229.0	Mm.34766	NM_001033139	ENSMUSG00000024970	Spindoc	1700105P06Rik|AI846148|SPIN-DOC	spindlin interactor and repressor of chromatin binding	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28702923-4	chr7	28702829	28703029	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9785.0	NM_001163702	233040.0	Mm.116116	NM_207238	ENSMUSG00000037463	Fbxo27	E130008B10Rik|FBG5|Gm161	F-box protein 27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-24797794-4	chr13	24797684	24797884	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-3873.0	NM_024473	79555.0	Mm.266668	NM_024473	ENSMUSG00000019132	BC005537	8030460C05Rik|C78201	cDNA sequence BC005537	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26533994-4	chr17	26533882	26534082	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25510.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	5.29125294688496	5.18325128070228	3.47717960713224	4.97428807863695	3.90348850769486	4.09205976794752	3.14553229205877	3.97254862169862	-1.37072609092425	0.00391628257809432	0.0551484500375692
Merged-chr7-44344842-4	chr7	44344757	44344957	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034115, intron 21 of 24)	intron (NM_001034115, intron 21 of 24)	30173.0	NM_027049	69349.0	Mm.358922	NM_027049	ENSMUSG00000008028	1700008O03Rik	-	RIKEN cDNA 1700008O03 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-41409763-1	chr17	41409663	41409863	+	789.0	f1_balb.idr	Intergenic	L1Md_F3|LINE|L1	475078.0	NM_008650	17850.0	Mm.259884	NM_008650	ENSMUSG00000023921	Mut	D230010K02Rik|Mcm	methylmalonyl-Coenzyme A mutase	protein-coding	0.206643106013594	0.229391910068606	0.825061875203259	0.216245537969169	0.208077041511899	1.00312760538726	0.716021674110204	0.396293014403807	1.29788779031638	0.504952461387452	1
Merged-chr4-59164180-4	chr4	59164075	59164275	+	956.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25375.0	NM_011673	22234.0	Mm.198803	NM_011673	ENSMUSG00000028381	Ugcg	AU043821|C80537|Epcs21|GlcT-1|Ugcgl	UDP-glucose ceramide glucosyltransferase	protein-coding	3.87377655762676	4.31581555485949	3.27379386509625	2.80152799598976	4.18518918524527	4.49938311973343	3.83640873895931	3.48391340862688	0.514154382144022	0.335408343206408	0.83593283300053
Merged-chr13-112398313-4	chr13	112398214	112398414	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65756.0	NM_010560	16195.0	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80554920-3	chr7	80554796	80554996	+	791.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19777.0	NM_001042527	12144.0	Mm.12932	NM_007550	ENSMUSG00000030528	Blm	-	Bloom syndrome, RecQ like helicase	protein-coding	-0.682131627535451	-0.671319860668475	-0.674863146230903	-0.677596166135016	-0.291804845436015	-0.0356213560756732	-0.674081735836913	-0.677118762961166	3.33454605312832	0.238118206216222	1
Merged-chr19-38030958-4	chr19	38030837	38031037	+	678.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302140, intron 1 of 53)	RLTR26C_MM|LTR|ERVK	12640.0	NM_001099634	226101.0	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding	2.29611025068687	1.97643813576561	1.77121253846084	2.26610620555485	1.77917414281164	1.47011390895479	1.19867037889045	2.09247864819901	-1.16317733719891	0.259607360378409	0.75994692009275
Merged-chr16-57219458-2	chr16	57219358	57219558	+	975.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026254, intron 1 of 17)	intron (NM_026254, intron 1 of 17)	12008.0	NM_026254	67581.0	Mm.257819	NM_026254	ENSMUSG00000022749	Tbc1d23	4930451A13Rik|AU015720|AU043671|AU043778|D030022P07Rik|W51689	TBC1 domain family, member 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-80723850-3	chr9	80723760	80723960	+	976.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-258422.0	NM_022016	63859.0	Mm.422780	NM_022016	ENSMUSG00000032343	Impg1	A930015H12Rik|IMP150|SPACR	interphotoreceptor matrix proteoglycan 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-11705204-2	chr18	11705104	11705304	+	700.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081223, intron 6 of 18)	intron (NM_001081223, intron 6 of 18)	47855.0	NM_001081223	225182.0	Mm.154275	NM_175458	ENSMUSG00000041238	Rbbp8	9930104E21Rik|CtIP|RBBP-8|RIM|SAE2	retinoblastoma binding protein 8, endonuclease	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71012132-3	chr17	71012030	71012230	+	650.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR17|LTR|ERVK	-7427.0	NM_010867	17929.0	Mm.4103	NM_010867	ENSMUSG00000024049	Myom1	D430047A17Rik	myomesin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-136065897-1	chr7	136065797	136065997	+	865.5	f0_balb.idr	Intergenic	Intergenic	-202427.0	NR_102277	77383.0	Mm.227745	NR_102277	ENSMUSG00000110027	C030029H02Rik	-	RIKEN cDNA C030029H02 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-50083600-2	chr18	50083500	50083700	+	774.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_134131, intron 1 of 1)	intron (NM_134131, intron 1 of 1)	-29938.0	NR_155293	102635912.0	Mm.440627	NR_155293		C030005K06Rik	-	RIKEN cDNA C030005K06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-24626337-4	chr16	24626226	24626426	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 5 of 12)	intron (NM_178665, intron 5 of 12)	-95529.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122259447-2	chr8	122259358	122259558	+	733.916626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22683.0	NM_009569	22761.0	Mm.3105	NM_009569	ENSMUSG00000049577	Zfpm1	FOG|Fog1	zinc finger protein, multitype 1	protein-coding	1.27263839913161	1.14394935258872	1.36608125781038	1.52615525934209	2.16170736663706	2.11247271775263	2.44583810635753	2.51903133197137	3.10258387546971	0.00469357671194336	0.0637993203057739
Merged-chr4-95193868-2	chr4	95193768	95193968	+	686.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-141646.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-48466901-1	chr6	48466801	48467001	+	1000.0	f1_balb.idr	intron (NM_173428, intron 40 of 102)	intron (NM_173428, intron 40 of 102)	18672.0	NM_173428	243369.0	Mm.25039	NM_173428	ENSMUSG00000029797	Sspo	C79529|Scospondin	SCO-spondin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-50044376-2	chr6	50044276	50044476	+	725.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65865.0	NM_019939	56524.0	Mm.41288	NM_008016	ENSMUSG00000038388	Mpp6	P55t|Pals2	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-73636565-2	chr15	73636465	73636665	+	574.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11821.0	NM_001033219	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-8498781-4	chr12	8498611	8498811	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007483, exon 1 of 1)	3' UTR (NM_007483, exon 1 of 1)	1298.0	NM_007483	11852.0	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-40562365-2	chr12	40562265	40562465	+	640.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	116312.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-96438833-3	chr9	96438757	96438957	+	731.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39818.0	NM_011279	19823.0	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141790808-4	chr4	141790724	141790924	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172338)	promoter-TSS (NM_172338)	-180.0	NM_172338	214063.0	Mm.39102	NM_172338	ENSMUSG00000040697	Dnajc16	2900037O03Rik|4732437J24Rik|D030060M24|mKIAA0962	DnaJ heat shock protein family (Hsp40) member C16	protein-coding	7.22377315687	6.8571376088135	7.52001366380003	7.46326807336236	7.24352030982023	7.02506248836159	7.09172486963912	7.43882196173766	-0.0834837075449462	0.641726773579374	0.982599433509505
Merged-chr14-70817998-1	chr14	70817898	70818098	+	636.5	f0_balb.idr	Intergenic	Intergenic	-34935.0	NR_045939	73648.0	Mm.410851	NR_045939	ENSMUSG00000099528	2410012E07Rik	-	RIKEN cDNA 2410012E07 gene	ncRNA	1.81831797548715	2.46676281087521	2.09490817387172	1.08321950943755	2.11975917837226	1.39352346087461	1.10821622935628	2.04304415538783	-0.586172269248862	0.610568065238485	0.975183586809945
Merged-chr2-27566839-2	chr2	27566739	27566939	+	628.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51692.0	NM_080848	140858.0	Mm.28265	NM_080848	ENSMUSG00000026917	Wdr5	2410008O07Rik|AA408785|AA960360|Big|Big-3	WD repeat domain 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-96143848-4	chr9	96143735	96143935	+	816.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177352, intron 5 of 16)	intron (NM_177352, intron 5 of 16)	24406.0	NM_177352	235533.0	Mm.213651	NM_177352	ENSMUSG00000041440	Gk5	AV095337|C330018K18Rik|G630067D24Rik	glycerol kinase 5 (putative)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-14704407-2	chr14	14704307	14704507	+	641.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360513, intron 1 of 25)	intron (NM_001360513, intron 1 of 25)	1382.0	NM_001360509	218756.0	Mm.258893	NM_001033270	ENSMUSG00000021733	Slc4a7	E430014N10Rik|NBC3|NBCn1|NBCn1-G|Tg(Thy1-SNCA)12Mjff	solute carrier family 4, sodium bicarbonate cotransporter, member 7	protein-coding	0.22166844869322	0.720245236960943	0.788504547565003	0.389325475169068	0.222814664122201	0.592881534236844	0.235357874460703	0.530236160762012	-1.00596391684219	0.589827326416361	1
Merged-chr1-87901138-3	chr1	87901029	87901229	+	959.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177646, intron 3 of 29)	intron (NM_177646, intron 3 of 29)	-46830.0	NR_136921	100503175.0	Mm.426422	NR_136921	ENSMUSG00000101942	Gm19582	-	predicted gene, 19582	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-86167990-4	chr15	86167892	86168092	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145475, intron 1 of 12)	intron (NM_145475, intron 1 of 12)	-17736.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-87713991-2	chr16	87713891	87714091	+	715.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007520, intron 1 of 4)	B3A|SINE|B2	15037.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-145270331-4	chr4	145270199	145270399	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009401, intron 12 of 12)	intron (NM_009401, intron 12 of 12)	-23429.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30957511-4	chr7	30957384	30957584	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011680)	promoter-TSS (NM_011680)	-681.0	NM_011680	22282.0	Mm.322453	NM_011680	ENSMUSG00000058239	Usf2	Usf-2|bHLHb12	upstream transcription factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-51491381-12	chr10	51491345	51491545	+	989.025024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013532, exon 3 of 9)	exon (NM_013532, exon 3 of 9)	547.0	NM_013532	14728.0	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-12753956-2	chr17	12753856	12754056	+	650.1999509999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_010515, intron 1 of 47)	intron (NM_010515, intron 1 of 47)	12645.0	NR_027784	104103.0	Mm.26553	NR_002853	ENSMUSG00000078247	Airn	2810051F02Rik|2810434M15Rik|AI256653|AI597500|AW049873|Air|B930018I07Rik|D17Ertd663e|IGF2RAS	antisense Igf2r RNA	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-85311913-1	chr8	85311813	85312013	+	766.0	f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	12281.0	NR_028268	56452.0	Mm.29709	NM_019716	ENSMUSG00000031697	Orc6	6720420I10Rik|Orc6l	origin recognition complex, subunit 6	protein-coding	0.816120935217757	2.32347626008946	2.56839760736311	0.858684293699572	0.822664483118642	1.83637050450886	2.51571619260186	0.862980179063935	-0.39975268892442	0.872302706412999	0.998431161219273
Merged-chr7-126622147-2	chr7	126622047	126622247	+	752.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3323.0	NM_019738	56312.0	Mm.18742	NM_019738	ENSMUSG00000030717	Nupr1	2310032H04Rik|Com1|p8	nuclear protein transcription regulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-175639980-3	chr1	175639880	175640080	+	785.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133809, intron 4 of 14)	intron (NM_133809, intron 4 of 14)	7787.0	NM_133809	98256.0	Mm.27217	NM_133809	ENSMUSG00000039783	Kmo	AI046660	kynurenine 3-monooxygenase (kynurenine 3-hydroxylase)	protein-coding	2.70473677112358	2.43915368742221	1.91059535962739	2.16949501414811	2.49549163047688	2.68880297511487	2.60161273769883	2.03647045989096	0.29194651117885	0.719178979058383	0.998431161219273
Merged-chr11-100994812-4	chr11	100994637	100994837	+	901.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(GA)n|Simple_repeat|Simple_repeat	-14715.0	NM_016920	11975.0	Mm.340818	NM_016920	ENSMUSG00000019302	Atp6v0a1	AA959968|ATP6a1|Atp6n1|Atp6n1a|Atpv0a1|Vpp-1|Vpp1	ATPase, H+ transporting, lysosomal V0 subunit A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-87016567-4	chr10	87016484	87016684	+	915.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8642.0	NM_138673	192188.0	Mm.279611	NM_138673	ENSMUSG00000035459	Stab2	FEEL-2|FELL|MFEEL-2|STAB-2	stabilin 2	protein-coding	2.77915374824411	2.09298153670041	2.52677552898849	1.80906514262129	2.60054774838413	2.1076435765579	2.54631507132201	1.81733291856329	-0.121462155365627	0.888058476026443	0.998431161219273
Merged-chr6-31404796-2	chr6	31404696	31404896	+	615.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013791, intron 1 of 17)	intron (NM_013791, intron 1 of 17)	5968.0	NM_013791	27418.0	Mm.238038	NM_013791	ENSMUSG00000025609	Mkln1	A130067F06Rik|AU015903|BB154892	muskelin 1, intracellular mediator containing kelch motifs	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-104190524-4	chr12	104190419	104190619	+	886.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23935.0	NM_009251	20715.0	Mm.312628	NM_009251		Serpina3g	2A2|AI119734|Spi2-1|Spi2/eb.1|Spi2A|spi2	serine (or cysteine) peptidase inhibitor, clade A, member 3G	protein-coding	2.2571754341382	2.1680360933853	2.09507639820745	2.38030586859678	2.72816844755208	1.62549095480679	2.65672596260471	1.29874623005852	0.0401218466008445	0.966732527707982	0.998431161219273
Merged-chr17-34116327-2	chr17	34116227	34116427	+	790.75	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_037970, exon 4 of 13)	non-coding (NR_037970, exon 4 of 13)	3573.0	NR_037970	14312.0	Mm.3444	NM_010238	ENSMUSG00000024335	Brd2	AW228947|D17H6S113E|Frg-1|Fsrg-1|Fsrg1|Nat|Ring3|Rnf3|mKIAA4005	bromodomain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-40238499-2	chr9	40238399	40238599	+	817.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30717.0	NM_001083917	235281.0	Mm.290083	NM_153522	ENSMUSG00000049281	Scn3b	1110001K16Rik|4833414B02Rik|Scnb3	sodium channel, voltage-gated, type III, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-80785791-2	chr15	80785691	80785891	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144812, intron 4 of 24)	intron (NM_144812, intron 4 of 24)	-12819.0	NM_177124	213988.0	Mm.131328	NM_144812	ENSMUSG00000047888	Tnrc6b	2700090M07Rik|A730065C02Rik|AI848765|D230019K20Rik	trinucleotide repeat containing 6b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81101491-4	chr15	81101371	81101571	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001082536, intron 2 of 13)	intron (NM_001082536, intron 2 of 13)	3576.0	NM_153049	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	2.62372891137023	2.25996027903607	3.35634380555602	1.69555392800373	2.74096004995538	1.82652771595292	3.78158539876422	3.05955374700384	0.717980954009989	0.383669547648647	0.874591621156771
Merged-chr16-50736936-4	chr16	50736835	50737035	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4162.0	NR_028300	68190.0	Mm.139089	NR_028300		Dubr	5330426P16Rik|Dum	Dppa2 upstream binding RNA	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81484980-2	chr10	81484880	81485080	+	689.625	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2271.0	NM_001311124	319586.0	Mm.152689	NM_176954	ENSMUSG00000034818	Celf5	4930565A21Rik|Brunol5	CUGBP, Elav-like family member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-22390131-2	chr9	22390031	22390231	+	956.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028390)	promoter-TSS (NM_028390)	-925.0	NM_028390	68743.0	Mm.282751	NM_028390	ENSMUSG00000036777	Anln	1110037A17Rik|2900037I21Rik|C78101|Scraps	anillin, actin binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-170324312-4	chr2	170324264	170324464	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31997.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-13031860-4	chr18	13031747	13031947	+	888.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24857.0	NM_153087	225192.0	Mm.207073	NM_153087	ENSMUSG00000037346	Hrh4	AXOR35|BG26|GPCR105|GPRv53|H4|H4R|HH4R	histamine receptor H4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-100443557-2	chr9	100443457	100443657	+	714.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42916.0	NM_001033543	213208.0	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	-1.13146769101922	-1.10460487238646	-1.11735372523027	-1.12713099301154	-1.13082009585647	-0.300663969208598	-1.11446766439333	-1.12595147812057	3.06518455575839	0.353555291099784	1
Merged-chr6-140714123-2	chr6	140714023	140714223	+	554.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	87238.0	NM_001309436	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-18655013-4	chr2	18654920	18655120	+	912.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-17442.0	NM_147778	12238.0	Mm.249586	NM_147778	ENSMUSG00000051154	Commd3	AW550818|Bup|D2Ertd542e	COMM domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46140503-4	chr8	46140398	46140598	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16352.0	NM_207213	102141.0	Mm.267258	NM_207213	ENSMUSG00000038291	Snx25	AI661919|Gm1699|Gm173|Sbbi31	sorting nexin 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-111794774-2	chr13	111794674	111794874	+	827.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011945, intron 1 of 19)	intron (NM_011945, intron 1 of 19)	14219.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-45172077-2	chr12	45171977	45172177	+	770.283325	f1_balb.idr|f1_c57bl6.idr	Intergenic	MamGypLTR3|LTR|Gypsy	-97594.0	NM_144552	217517.0	Mm.285400	NM_144552	ENSMUSG00000046314	Stxbp6	BC024598|C85317	syntaxin binding protein 6 (amisyn)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91366801-4	chr16	91366716	91366916	+	896.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5967.0	NM_010509	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80900369-4	chr10	80900303	80900503	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010722)	TTS (NM_010722)	566.0	NM_013895	30055.0	Mm.142132	NM_013895	ENSMUSG00000020219	Timm13	D10Ertd378e|Tim9|Timm9	translocase of inner mitochondrial membrane 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141135109-2	chr4	141135009	141135209	+	764.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001277195, intron 1 of 3)	PB1D10|SINE|Alu	4687.0	NR_102344	213491.0	Mm.332006	NM_174996	ENSMUSG00000040842	Szrd1	1110022I03|D4Ertd22e	SUZ RNA binding domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27826422-4	chr17	27826330	27826530	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5888.0	NM_001271511	224647.0	Mm.196577	NM_001033279	ENSMUSG00000056692	D17Wsu92e	AU020189|C030010A15|C80239	DNA segment, Chr 17, Wayne State University 92, expressed	protein-coding	1.03360654205611	1.18416747236878	2.36762611932141	0.685232282627634	1.0435631283302	0.721263339571933	1.14733161339133	1.26502781992479	-1.53055362341624	0.259090559594217	0.75927260363863
Merged-chr10-68126271-4	chr10	68126178	68126378	+	881.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023598, intron 7 of 9)	intron (NM_023598, intron 7 of 9)	146708.0	NM_001359319	170799.0	Mm.209844	NM_133244	ENSMUSG00000037846	Rtkn2	B130039D23Rik|Mbf|Plekhk1	rhotekin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-54921157-2	chr12	54921057	54921257	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013815, intron 15 of 26)	intron (NM_013815, intron 15 of 26)	-58280.0	NM_007688	12632.0	Mm.276826	NM_007688	ENSMUSG00000062929	Cfl2	-	cofilin 2, muscle	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-72204388-1	chr2	72204288	72204488	+	793.0	f1_c57bl6.idr	intron (NM_001355478, intron 11 of 26)	intron (NM_001355478, intron 11 of 26)	-81249.0	NM_023057	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	0.396309372966825	0.631094772125436	0.152249893094733	0.148016846996612	0.604514720517315	0.158990455270092	0.153461526686358	0.66691708841121	0.507995936610629	0.801342571138615	1
Merged-chr19-44344075-4	chr19	44344034	44344234	+	918.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183216, intron 5 of 5)	B1_Mur4|SINE|Alu	10808.0	NM_183216	329065.0	Mm.313583	NM_183216	ENSMUSG00000050195	Scd4	ACOD4	stearoyl-coenzyme A desaturase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-123344663-2	chr7	123344563	123344763	+	547.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001316713, intron 1 of 19)	intron (NM_001316713, intron 1 of 19)	25252.0	NM_001122643	70497.0	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-31192605-3	chr16	31192495	31192695	+	749.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030138, intron 1 of 22)	ORR1E-int|LTR|ERVL-MaLR	8643.0	NM_030138	78618.0	Mm.274646	NM_030138	ENSMUSG00000049076	Acap2	4832442G16|9530039J15Rik|CNT-B2|Centb2|mKIAA0041	ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-153740413-2	chr1	153740313	153740513	+	710.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011267)	promoter-TSS (NM_011267)	60.0	NM_011267	19734.0	Mm.181709	NM_011267	ENSMUSG00000026475	Rgs16	Rgs14|Rgsr	regulator of G-protein signaling 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3915309-2	chr12	3915209	3915409	+	984.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001271753)	TTS (NM_001271753)	23565.0	NM_153743	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81124559-2	chr10	81124459	81124659	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001347144, exon 11 of 11)	3' UTR (NM_001347144, exon 11 of 11)	-11712.0	NM_010731	16969.0	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-36649296-2	chr15	36649196	36649396	+	756.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-40323.0	NM_008774	18458.0	Mm.371570	NM_008774	ENSMUSG00000022283	Pabpc1	PABP|Pabp1|PabpI|Pabpl1|ePAB	poly(A) binding protein, cytoplasmic 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72145282-2	chr6	72145182	72145382	+	973.5833130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001035228, intron 4 of 6)	B4A|SINE|B4	-22085.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-78198191-2	chr13	78198091	78198291	+	733.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045195, exon 1 of 3)	non-coding (NR_045195, exon 1 of 3)	174.0	NR_045195	320174.0	Mm.393122	NR_045195		A830082K12Rik	-	RIKEN cDNA A830082K12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-59615187-1	chr4	59615087	59615287	+	578.0	f0_balb.idr	intron (NM_001301367, intron 11 of 11)	intron (NM_001301367, intron 11 of 11)	-11024.0	NM_001015681	230259.0	Mm.45688	NM_153158	ENSMUSG00000045071	E130308A19Rik	-	RIKEN cDNA E130308A19 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-53765689-2	chr11	53765589	53765789	+	914.083374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2035.0	NR_106131	102465772.0		NR_106131	ENSMUSG00000099153	Mir7671	Gm27802|mmu-mir-7671	microRNA 7671	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-58145435-4	chr15	58145260	58145460	+	764.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029734, intron 1 of 5)	intron (NM_029734, intron 1 of 5)	3994.0	NM_001326599	76773.0	Mm.26771	NM_029734	ENSMUSG00000022359	Wdyhv1	2410187C16Rik|AU014961|AW550036|Ntaq1	WDYHV motif containing 1	protein-coding	2.19062114350913	2.38182296968276	1.92642949968356	1.08622692116246	1.47435061812892	2.98208016807995	1.38554037022176	1.5517790898841	0.184302550354834	0.864955883423342	0.998431161219273
Merged-chr5-99241522-2	chr5	99241422	99241622	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_145839, exon 3 of 14)	exon (NM_145839, exon 3 of 14)	11405.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-114978642-5	chr9	114978577	114978777	+	853.241699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-44690.0	NM_175380	333433.0	Mm.38198	NM_175380	ENSMUSG00000050627	Gpd1l	2210409H23Rik|D9Ertd660e	glycerol-3-phosphate dehydrogenase 1-like	protein-coding	-1.17633091019133	-0.819693836037338	-1.16305649063158	-1.0108512912282	-1.03177387368233	-1.15018978408356	-1.16066253127787	-1.17018824291107	-1.42009530240238	0.643387275810362	1
Merged-chr2-102804238-3	chr2	102804156	102804356	+	775.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57496.0	NR_153853	102637542.0	Mm.371582	NR_153852		Gm13872	-	predicted gene 13872	ncRNA	0.751616825009013	0.751074837129535	0.84004718939096	0.807234267755405	0.536948846961534	0.604072394356661	0.582360319010499	0.408008279558897	-1.81200266663638	0.261554893924432	1
Merged-chr3-8984807-3	chr3	8984698	8984898	+	937.5277710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009412, intron 1 of 5)	MER5A|DNA|hAT-Charlie	19406.0	NM_001357073	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	0.229421184354153	0.106272822221451	0.100690509271079	0.0963861738840875	0.562439856042625	0.107531741161879	0.556022317813647	0.721471944099267	3.2554487739459	0.112430844720132	1
Merged-chr6-56797746-4	chr6	56797654	56797854	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145958)	promoter-TSS (NM_145958)	59.0	NM_001362210	210973.0	Mm.57295	NM_145958	ENSMUSG00000059486	Kbtbd2	BC022962|Bklhd1|mKIAA1489	kelch repeat and BTB (POZ) domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-34927076-2	chr18	34926976	34927176	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144866, intron 2 of 10)	intron (NM_144866, intron 2 of 10)	4927.0	NM_144866	225363.0	Mm.329353	NM_144866	ENSMUSG00000024360	Etf1	AI463371|D6Ertd109e|ERF|ERF1|SUP45L1|TB3-1	eukaryotic translation termination factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-135937550-4	chr6	135937491	135937691	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008171, intron 4 of 14)	MIRb|SINE|MIR	235920.0	NM_008171	14812.0	Mm.436649	NM_008171	ENSMUSG00000030209	Grin2b	AW490526|GluN2B|NR2B|Nmdar2b	glutamate receptor, ionotropic, NMDA2B (epsilon 2)	protein-coding	4.44727767120013	3.74657991719769	5.25462936209778	3.31999147755613	3.58551611264618	3.34720020849446	4.15962739749898	3.97508315805145	-0.800001372293376	0.131023763423082	0.566336454410263
Merged-chr9-61038511-2	chr9	61038411	61038611	+	747.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21442.0	NR_040767	330956.0	Mm.207985	NR_040767	ENSMUSG00000111290	Gm5122	A430102L10	predicted gene 5122	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81847345-2	chr15	81847223	81847423	+	564.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_020507)	TTS (NM_020507)	11003.0	NM_020507	57259.0	Mm.323595	NM_020507	ENSMUSG00000048546	Tob2	2900090N22Rik|4930545K18Rik|AV071822|mKIAA1663	transducer of ERBB2, 2	protein-coding	0.547765652397769	1.40576013988203	0.572481259632245	1.2918094807625	0.550097826281891	1.16179614910001	0.575086718850046	1.39938971034324	-0.168725071913411	0.920133405254709	0.998431161219273
Merged-chr1-78656607-2	chr1	78656507	78656707	+	673.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1218.0	NM_001136222	74205.0	Mm.276016	NM_028817	ENSMUSG00000032883	Acsl3	2610510B12Rik|Acs3|C85929|Facl3|Pro2194	acyl-CoA synthetase long-chain family member 3	protein-coding	-1.50811478453619	-0.99851579554048	-1.48484165847197	-1.49312904261012	-1.50577282675516	-1.47256636097272	-1.48255773576353	-1.49164560481169	-2.24133836997777	0.518237887813808	1
Merged-chr7-102427268-2	chr7	102427168	102427368	+	550.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_009287, exon 10 of 12)	exon (NM_009287, exon 10 of 12)	-14427.0	NM_009103	20133.0	Mm.197486	NM_009103	ENSMUSG00000030978	Rrm1	RnrM1	ribonucleotide reductase M1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-18043206-4	chr5	18043092	18043292	+	885.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	80622.0	NM_001081143	242851.0	Mm.332230	NM_001081143	ENSMUSG00000028777	Gnat3	Ggust|Gtn	guanine nucleotide binding protein, alpha transducing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-104459883-2	chr5	104459783	104459983	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008861, exon 1 of 15)	exon (NM_008861, exon 1 of 15)	426.0	NM_008861	18764.0	Mm.6442	NM_008861	ENSMUSG00000034462	Pkd2	C030034P18Rik|PC2|TRPP2	polycystic kidney disease 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-73585465-2	chr2	73585365	73585565	+	626.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_153820, intron 1 of 1)	intron (NR_153820, intron 1 of 1)	605.0	NR_153820	102633437.0		NR_153820		Chrna1os	Gm13705|Gm31264	cholinergic receptor, nicotinic, alpha polypeptide 1 (muscle), opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-118736284-4	chr10	118736189	118736389	+	976.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	132614.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-108880070-2	chr3	108879970	108880170	+	725.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177091, intron 4 of 12)	G-rich|Low_complexity|Low_complexity	9938.0	NM_177091	320181.0	Mm.244233	NM_177091	ENSMUSG00000045326	Fndc7	E230011A21Rik	fibronectin type III domain containing 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-149845855-2	chr4	149845755	149845955	+	723.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-71588.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-115033727-4	chr6	115033610	115033810	+	904.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026894, intron 2 of 7)	intron (NM_026894, intron 2 of 7)	4164.0	NM_026894	68971.0	Mm.24937	NM_026894	ENSMUSG00000030316	Tamm41	1500001M20Rik|TAM41	TAM41 mitochondrial translocator assembly and maintenance homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-32804923-4	chr19	32804829	32805029	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008960, intron 5 of 8)	intron (NM_008960, intron 5 of 8)	47352.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	2.0443266264944	2.88663179645502	2.48270402594843	1.82803457427128	2.30430397218904	3.29565305386585	2.37803949947222	1.83726192804074	0.413299535086234	0.627761835301922	0.980912176761026
Merged-chr3-89997991-2	chr3	89997891	89998091	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045749)	promoter-TSS (NR_045749)	112.0	NM_001310681	23897.0	Mm.256035	NM_011826	ENSMUSG00000027944	Hax1	HAX-1|HSP1BP-1|Hs1bp1|SIG-111|Silg111|mHAX-1s	HCLS1 associated X-1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-43683777-2	chr7	43683677	43683877	+	581.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-6641.0	NM_174866	317653.0	Mm.247377	NM_174866	ENSMUSG00000044737	Klk14	GK14	kallikrein related-peptidase 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-13665870-4	chr6	13665787	13665987	+	762.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175312, intron 1 of 4)	intron (NM_175312, intron 1 of 4)	12079.0	NM_175312	101148.0	Mm.354863	NM_175312	ENSMUSG00000042742	Bmt2	AI666701|B630005N14Rik	base methyltransferase of 25S rRNA 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152903784-3	chr1	152903702	152903902	+	996.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG-603	-1156.0	NM_001005507	226517.0	Mm.270775	NM_001005507	ENSMUSG00000042772	Smg7	9430023P16Rik|mKIAA0250	Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165902447-2	chr2	165902347	165902547	+	689.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-17609.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-103392575-4	chr14	103392488	103392688	+	873.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45788.0	NM_207215	105689.0	Mm.6478	NM_207215	ENSMUSG00000033004	Mycbp2	AU023734|AW107953|AW546647|C130061D10Rik|Pam|Phr1|R75243	MYC binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150589225-3	chr4	150589139	150589339	+	983.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 12 of 22)	intron (NM_001085492, intron 12 of 22)	62935.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72115070-4	chr6	72114969	72115169	+	905.616699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011375, intron 1 of 6)	intron (NM_011375, intron 1 of 6)	7871.0	NR_045163	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-34020526-3	chr3	34020442	34020642	+	992.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113189, intron 1 of 16)	CpG	463.0	NM_001113189	14359.0	Mm.259021	NM_008053	ENSMUSG00000027680	Fxr1	1110050J02Rik|9530073J07Rik|AI851072|Fxr1h|Fxr1p	fragile X mental retardation gene 1, autosomal homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-88552883-2	chr17	88552747	88552947	+	590.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028658, intron 7 of 21)	ORR1G|LTR|ERVL-MaLR	22723.0	NM_028658	73825.0	Mm.271817	NM_028658	ENSMUSG00000034709	Ppp1r21	1110018J12Rik|AI426045|AW550781|Ccdc128|Klraq1	protein phosphatase 1, regulatory subunit 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-47905748-3	chr19	47905644	47905844	+	844.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001738, intron 1 of 1)	intron (NM_001001738, intron 1 of 1)	13555.0	NM_001001738	414801.0	Mm.29457	NM_001001738	ENSMUSG00000044948	Itprip	4833424O12Rik|DANGER	inositol 1,4,5-triphosphate receptor interacting protein	protein-coding	2.17479260666635	2.65665419270406	0.95205954575114	1.59268392160756	2.87029802768236	1.28933990376462	0.959054383558748	0.931389608340492	-0.361789142412658	0.776550452259875	0.998431161219273
Merged-chr2-16253584-3	chr2	16253492	16253692	+	692.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310455, intron 38 of 38)	L1_Mus2|LINE|L1	-102712.0	NM_026162	67448.0	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-27938462-2	chr15	27938362	27938562	+	724.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081302, intron 1 of 56)	intron (NM_001081302, intron 1 of 56)	87386.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-60902725-4	chr2	60902637	60902837	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	-21299.0	NM_001141931	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55733283-2	chr14	55733183	55733383	+	660.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-11020.0	NM_001360387	56187.0	Mm.87216	NM_019519	ENSMUSG00000040472	Rabggta	gm	Rab geranylgeranyl transferase, a subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-31057494-1	chr7	31057394	31057594	+	931.0	f1_balb.idr	Intergenic	MIR|SINE|MIR	-1838.0	NM_019503	56188.0	Mm.1491	NM_019503	ENSMUSG00000036570	Fxyd1	0610012C17Rik|1110006M24Rik|Plm|Pml	FXYD domain-containing ion transport regulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-58877116-1	chr18	58877016	58877216	+	565.0	f1_balb.idr	intron (NM_175506, intron 2 of 22)	Lx6|LINE|L1	40753.0	NM_175506	240322.0	Mm.71963	NM_175506	ENSMUSG00000053441	Adamts19	4831407I23Rik|AU015154|D230034E10Rik	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 19	protein-coding	-1.84456824087626	-1.81369603968745	-1.82303204814395	-1.83070092346192	-1.84240106943552	-1.51787681909439	-1.82091858046888	-1.82932819844659	1.64481029852639	0.639921510788462	1
Merged-chr13-23778482-3	chr13	23778386	23778586	+	943.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	-4055.0	NM_001029935	214158.0	Mm.314151	NM_001029935	ENSMUSG00000064140	Trim38	Gm23	tripartite motif-containing 38	protein-coding	1.02611584984912	0.536210465666478	0.526560827716749	1.10050303954827	0.508374561271275	0.538374817504374	1.36220214150007	1.21208859201371	0.673061886133992	0.696023101018904	0.997923870727665
Merged-chr8-79367512-3	chr8	79367429	79367629	+	630.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008539, intron 2 of 6)	intron (NM_008539, intron 2 of 6)	31939.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-149658204-2	chr4	149658104	149658304	+	625.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001029837, intron 8 of 23)	intron (NM_001029837, intron 8 of 23)	-2637.0	NR_105990	102465983.0		NR_105990	ENSMUSG00000098580	Mir7023	Gm27912|mmu-mir-7023	microRNA 7023	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-31019377-4	chr7	31019254	31019454	+	824.616699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR11A|LTR|ERVK	20963.0	NR_106017	102465635.0		NR_106017	ENSMUSG00000098783	Mir7050	Gm27578|mmu-mir-7050	microRNA 7050	ncRNA	2.66688438794307	3.44905278639193	3.59304570749822	1.46294542764255	3.10108465485205	3.03049458069882	1.8057236744522	3.02202487759649	-0.330939788204571	0.689412710844824	0.996533206832645
Merged-chr17-13568744-1	chr17	13568644	13568844	+	865.0	f1_balb.idr	Intergenic	Intergenic	-14650.0	NR_045437	72578.0	Mm.46549	NR_045436	ENSMUSG00000038347	2700054A10Rik	-	RIKEN cDNA 2700054A10 gene	ncRNA	-0.914587585352826	-1.14968844836017	-1.16012564310979	-1.16869906563582	-0.801023986531728	-1.14742666471813	-1.15776289099527	-1.16716442710272	0.46649237519341	0.890119923761052	1
Merged-chr19-4060551-2	chr19	4060451	4060651	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-1104.0	NM_001362043	225884.0	Mm.440201	NM_144869	ENSMUSG00000058216	Gstp3	-	glutathione S-transferase pi 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-81751323-4	chr12	81751226	81751426	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001174107, intron 2 of 10)	ID_B1|SINE|B4	29844.0	NM_177395	338372.0	Mm.35284	NM_177395	ENSMUSG00000042724	Map3k9	E130314H24Rik|Mlk1|Prke1	mitogen-activated protein kinase kinase kinase 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-35028820-4	chr7	35028715	35028915	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008820, intron 11 of 14)	intron (NM_008820, intron 11 of 14)	27751.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78842695-3	chr15	78842636	78842836	+	852.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027219)	promoter-TSS (NM_027219)	89.0	NM_027219	104445.0	Mm.307488	NM_027219	ENSMUSG00000049521	Cdc42ep1	1810058K22Rik|AA980734|Borg5|CEP1|MSE55	CDC42 effector protein (Rho GTPase binding) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-67887756-1	chr14	67887656	67887856	+	564.0	f1_balb.idr	intron (NM_177780, intron 1 of 51)	(GGGA)n|Simple_repeat|Simple_repeat	-28011.0	NR_105857	102465310.0		NR_105857	ENSMUSG00000098866	Mir6539	Gm27464|mir-6539|mmu-mir-6539	microRNA 6539	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-107664623-2	chr7	107664523	107664723	+	651.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357436)	promoter-TSS (NM_001357436)	-855.0	NM_001357437	19024.0	Mm.2817	NM_008905	ENSMUSG00000036528	Ppfibp2	Cclp1	PTPRF interacting protein, binding protein 2 (liprin beta 2)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167929398-2	chr2	167929298	167929498	+	898.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-2929.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-8844632-2	chr4	8844532	8844732	+	664.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001277149, exon 21 of 38)	exon (NM_001277149, exon 21 of 38)	93308.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-92106887-4	chr1	92106758	92106958	+	884.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207225, intron 2 of 26)	intron (NM_207225, intron 2 of 26)	73483.0	NM_207225	208727.0	Mm.318567	NM_207225	ENSMUSG00000026313	Hdac4	4932408F19Rik|HD4	histone deacetylase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-137823514-4	chr3	137823413	137823613	+	846.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39898.0	NR_105801	102466638.0		NR_105801	ENSMUSG00000099011	Mir6380	Gm27356|mmu-mir-6380	microRNA 6380	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-91776731-2	chr6	91776631	91776831	+	697.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159507, intron 17 of 23)	intron (NM_001159507, intron 17 of 23)	30662.0	NM_001159507	243547.0	Mm.333264	NM_001033353	ENSMUSG00000030098	Grip2	-	glutamate receptor interacting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-4567183-4	chr2	4567067	4567267	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177844, intron 2 of 11)	intron (NM_001177844, intron 2 of 11)	7413.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-114201322-5	chr2	114201122	114201322	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175466, intron 1 of 1)	CpG	210.0	NM_175466	228491.0	Mm.132523	NM_175466	ENSMUSG00000040321	Zfp770	6430601A21Rik|Znf770	zinc finger protein 770	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-38710110-2	chr6	38710010	38710210	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010433, intron 12 of 14)	intron (NM_010433, intron 12 of 14)	47041.0	NM_001101507	665180.0	Mm.349066	NM_001101507	ENSMUSG00000079598	Clec2l	AI414054|AW122724|Gm1064	C-type lectin domain family 2, member L	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126491516-2	chr8	126491416	126491616	+	888.916626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-16451.0	NM_001159907	212728.0	Mm.482479	NM_001159907	ENSMUSG00000090290	Tarbp1	Gm17296|Gm179	TAR RNA binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-98402785-3	chr10	98402687	98402887	+	625.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50920.0	NR_045179	667438.0	Mm.414522	NR_045179	ENSMUSG00000112896	Gm8633	EG667438	predicted gene 8633	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-64119776-7	chr1	64119678	64119878	+	977.488098	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033563, intron 1 of 3)	intron (NM_033563, intron 1 of 3)	1611.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-60219835-4	chr11	60219749	60219949	+	787.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358315, intron 1 of 18)	intron (NM_001358315, intron 1 of 18)	778.0	NM_011480	20787.0	Mm.278701	NM_011480	ENSMUSG00000020538	Srebf1	ADD1|SREBP1|bHLHd1	sterol regulatory element binding transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-107304121-2	chr11	107304021	107304221	+	582.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 4 of 9)	intron (NR_153311, intron 4 of 9)	-114740.0	NM_001161329	68979.0	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-24578318-1	chr5	24578218	24578418	+	540.0	f0_balb.idr	promoter-TSS (NM_001190443)	promoter-TSS (NM_001190443)	-851.0	NM_001190443	27407.0	Mm.21629	NM_013853	ENSMUSG00000028953	Abcf2	0710005O05Rik|Drr3|E430001O06	ATP-binding cassette, sub-family F (GCN20), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-42216981-2	chr18	42216881	42217081	+	588.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134137, intron 26 of 31)	intron (NM_134137, intron 26 of 31)	-20272.0	NM_027072	69401.0	Mm.34841	NM_027072	ENSMUSG00000059455	Plac8l1	1700009N18Rik|1700015M15Rik	PLAC8-like 1	protein-coding	-0.414558870737125	-0.540703230935184	-0.544084950773149	-0.389387508275546	-0.410800970177878	-0.539939042664381	-0.543340274764418	0.0653540380399885	1.5788726277119	0.527416851505758	1
Merged-chr13-75344787-1	chr13	75344687	75344887	+	572.0	f0_balb.idr	Intergenic	Intergenic	254930.0	NM_013628	18548.0	Mm.1333	NM_013628	ENSMUSG00000021587	Pcsk1	Nec-1|Nec1|PC1|PC3|Phpp-1|SPC3	proprotein convertase subtilisin/kexin type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-106339040-4	chr8	106338930	106339130	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-1042.0	NM_021491	58994.0	Mm.23298	NM_021491	ENSMUSG00000031906	Smpd3	4631433G07Rik|AI427456|AW537966|fro|nSMase2	sphingomyelin phosphodiesterase 3, neutral	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-35756695-4	chr2	35756590	35756790	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029774, intron 9 of 9)	intron (NM_029774, intron 9 of 9)	59958.0	NM_001290639	69601.0	Mm.29629	NM_001001602	ENSMUSG00000026883	Dab2ip	2310011D08Rik|AI480459|Aip1|mKIAA1743	disabled 2 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-136485939-3	chr2	136485845	136486045	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46376.0	NM_175667	319196.0	Mm.477841	NM_175667	ENSMUSG00000074771	Ankef1	AV276460|Ankrd5	ankyrin repeat and EF-hand domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-63955195-3	chr11	63955102	63955302	+	874.761108	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16_Mm|LTR|ERVK	-9024.0	NR_131111	78883.0	Mm.410764	NR_131111	ENSMUSG00000086359	9630013K17Rik	-	RIKEN cDNA 9630013K17 gene	ncRNA	0.764017195935406	0.87279463344372	0.839417290415023	0.812260957439748	2.32116504029454	1.45411414625067	3.11733437420823	2.37915190560138	5.88389428789705	1.38036314716329e-05	0.000605912086817016
Merged-chr2-103947053-3	chr2	103946971	103947171	+	923.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-10924.0	NM_001142337	16909.0	Mm.29266	NM_008505	ENSMUSG00000032698	Lmo2	Rbtn-2|Rbtn2|Rhom-2|Ttg2	LIM domain only 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52043056-2	chr13	52042956	52043156	+	834.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53685.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70609770-2	chr14	70609670	70609870	+	635.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360028, intron 9 of 14)	B2_Mm2|SINE|B2	8799.0	NM_001252666	13829.0	Mm.210863	NM_013514	ENSMUSG00000022099	Dmtn	AI325486|Epb4.9|Epb49|dematin	dematin actin binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-21609781-4	chr10	21609629	21609829	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027968, intron 2 of 2)	intron (NR_027968, intron 2 of 2)	16584.0	NR_027968	67692.0	Mm.54306	NM_183266	ENSMUSG00000050844	1700020N01Rik	-	RIKEN cDNA 1700020N01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10511981-2	chr19	10511881	10512081	+	745.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025333, intron 3 of 3)	URR1A|DNA|hAT-Charlie	13228.0	NM_025333	66072.0	Mm.180063	NM_025333	ENSMUSG00000024668	Sdhaf2	0610038F07Rik|AA407634|AW049997	succinate dehydrogenase complex assembly factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-85340488-4	chr9	85340367	85340567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13317.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	5.79778631338142	5.11862242866723	6.23658517642562	6.00950013446452	6.26496594312814	6.36874902087791	6.10825982596522	6.22404248138861	0.428511142058647	0.0902610758932514	0.464040133067938
Merged-chr5-99379751-4	chr5	99379645	99379845	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 2 of 3)	intron (NR_030692, intron 2 of 3)	-126818.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-46058854-2	chr10	46058754	46058954	+	631.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-185894.0	NR_028274	100302593.0		NR_028274	ENSMUSG00000095118	Snord14d	Gm23710	small nucleolar RNA, C/D box 14D	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-151035578-2	chr1	151035478	151035678	+	838.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42143.0	NM_001024720	545370.0	Mm.379425	NM_001024720	ENSMUSG00000066842	Hmcn1	EG545370|FIBL-6|Gm201	hemicentin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-150675125-4	chr2	150675034	150675234	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6894.0	NM_080575	68738.0	Mm.7044	NM_080575	ENSMUSG00000027452	Acss1	1110032O15Rik|AI788978|Acas2|Acas2l|AceCS2	acyl-CoA synthetase short-chain family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-24208066-4	chr7	24207923	24208123	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019940, intron 1 of 3)	intron (NM_019940, intron 1 of 3)	126.0	NM_019940	56707.0	Mm.448367	NM_019940	ENSMUSG00000087598	Zfp111	-	zinc finger protein 111	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-30609312-4	chr15	30609220	30609420	+	916.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355502, intron 3 of 21)	intron (NM_001355502, intron 3 of 21)	-429806.0	NR_045186	73784.0	Mm.66947	NR_045186	ENSMUSG00000115474	4930430F21Rik	-	RIKEN cDNA 4930430F21 gene	ncRNA	4.33038169458715	4.83641203101181	3.0741176106415	4.12667692673184	3.84424521011228	4.09353529907198	3.10092133370979	4.34727641933539	-0.414230168994181	0.42493748353348	0.901293602726532
Merged-chr7-107248847-3	chr7	107248737	107248937	+	695.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	39392.0	NM_029660	76572.0	Mm.128134	NM_029660	ENSMUSG00000073894	Rbmxl2	1700012H05Rik|Hnrnpg-t	RNA binding motif protein, X-linked-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-80265128-4	chr8	80265039	80265239	+	950.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-207131.0	NM_020259	15245.0	Mm.254493	NM_020259	ENSMUSG00000064325	Hhip	Hhip1	Hedgehog-interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-116821118-4	chr4	116821016	116821216	+	783.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_146256, exon 1 of 1)	exon (NM_146256, exon 1 of 1)	392.0	NM_146256	242642.0	Mm.279897	NM_146256	ENSMUSG00000043155	Hpdl	A830048M07Rik|BC034099|Gloxd1	4-hydroxyphenylpyruvate dioxygenase-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-142559757-3	chr3	142559655	142559855	+	922.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018734)	promoter-TSS (NM_018734)	-289.0	NM_001289492	55932.0	Mm.439718	NM_018734	ENSMUSG00000028268	Gbp3	AW228655|GBP-3|GBP-4|Gbp4	guanylate binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-99012898-2	chr10	99012798	99012998	+	958.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359507, intron 15 of 21)	intron (NM_001359507, intron 15 of 21)	-94184.0	NM_027740	382406.0	Mm.440656	NM_027740	ENSMUSG00000019952	Poc1b	4933430F16Rik|Wdr51b	POC1 centriolar protein B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-52100657-4	chr1	52100563	52100763	+	964.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001308266, intron 18 of 24)	intron (NM_001308266, intron 18 of 24)	-18775.0	NM_001357627	20846.0	Mm.277406	NM_009283	ENSMUSG00000026104	Stat1	2010005J02Rik|AA408197	signal transducer and activator of transcription 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101859926-4	chr15	101859829	101860029	+	749.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001003667)	TTS (NM_001003667)	-9143.0	NM_008473	16678.0	Mm.183137	NM_008473	ENSMUSG00000046834	Krt1	Krt-2.1|Krt2-1|Krt86	keratin 1	protein-coding	2.34232414143741	1.57746367564857	1.33948176213653	1.64137108121522	2.36275846566429	1.5883906132612	1.34792507732317	1.64960758472323	0.0390197214508422	0.971062703650767	0.998431161219273
Merged-chr16-75871810-2	chr16	75871710	75871910	+	626.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023380, intron 6 of 7)	intron (NM_023380, intron 6 of 7)	37456.0	NM_023380	67742.0	Mm.131406	NM_023380	ENSMUSG00000022876	Samsn1	4930571B16Rik|930571B16Rik|Hacs1|SLy2	SAM domain, SH3 domain and nuclear localization signals, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-109505072-4	chr4	109504977	109505177	+	884.224976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001199090)	TTS (NM_001199090)	26127.0	NM_001199090	67646.0	Mm.45820	NM_026291	ENSMUSG00000060491	4930522H14Rik	1700007J23Rik	RIKEN cDNA 4930522H14 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-158148201-2	chr2	158148101	158148301	+	554.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1809.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30231882-4	chr7	30231798	30231998	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027259)	promoter-TSS (NM_027259)	-176.0	NM_027259	69920.0	Mm.440028	NM_027259	ENSMUSG00000019738	Polr2i	2810002B19Rik	polymerase (RNA) II (DNA directed) polypeptide I	protein-coding	6.27232538132631	6.98222674776836	6.071121753644	6.04770715939878	6.29868513289651	6.23519481652025	6.10922182361027	6.07249558291897	-0.22691753567595	0.353387600126497	0.853132398390271
Merged-chr2-125280839-3	chr2	125280739	125280939	+	854.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33324.0	NM_023595	110074.0	Mm.282499	NM_023595	ENSMUSG00000027203	Dut	5031412I06Rik|5133400F09Rik|D2Bwg0749e|Dutp|dUTPase	deoxyuridine triphosphatase	protein-coding	-0.210907465293036	-0.153323438444563	-0.331675152835954	-0.334305563319448	-0.207298443612604	-0.327465695406161	0.0898706068266073	-0.0559792581204654	1.64902837710695	0.464967766772404	1
Merged-chr3-95282474-4	chr3	95282367	95282567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199475)	promoter-TSS (NM_199475)	-391.0	NM_173347	229589.0	Mm.14155	NM_173347	ENSMUSG00000015711	Prune1	9230112O05Rik|C130058A12|DRES-17|HTCD37|PRUNEM1|Prune|Prune-M1	prune exopolyphosphatase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141605479-1	chr4	141605379	141605579	+	1000.0	f1_c57bl6.idr	intron (NM_133754, intron 1 of 8)	intron (NM_133754, intron 1 of 8)	573.0	NM_133754	74202.0	Mm.490327	NM_133754	ENSMUSG00000006219	Fblim1	2410043F08Rik|Cal|Fblp1|Gt10|migfilin|migfilin(s)	filamin binding LIM protein 1	protein-coding	2.24409979320239	2.91336239173264	3.08487550617695	1.85264280871597	1.15846725344641	1.27587841927283	2.22940363968689	2.15558715216134	-1.8584067139637	0.0618494164588783	0.369433769668249
Merged-chr11-103675712-2	chr11	103675612	103675812	+	808.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21998.0	NM_019650	56494.0	Mm.195451	NM_019650	ENSMUSG00000020946	Gosr2	2310032N09Rik|C76855|Gs27|SNARE|membrin	golgi SNAP receptor complex member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-87496892-2	chr16	87496792	87496992	+	601.333374	f1_balb.idr|f1_c57bl6.idr	intron (NR_040375, intron 1 of 2)	Lx|LINE|L1	819.0	NR_040375	414095.0	Mm.166361	NR_040375	ENSMUSG00000093606	B130034C11Rik	-	RIKEN cDNA B130034C11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-174312993-2	chr2	174312893	174313093	+	857.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310085, intron 2 of 12)	intron (NM_001310085, intron 2 of 12)	-14775.0	NM_001310083	14683.0	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99833952-2	chr7	99833852	99834052	+	695.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5535.0	NM_016720	50877.0	Mm.103703	NM_016720	ENSMUSG00000035239	Neu3	-	neuraminidase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-122990134-2	chr4	122990034	122990234	+	555.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur3|SINE|Alu	-5797.0	NM_001303121	16918.0	Mm.1055	NM_008506	ENSMUSG00000028654	Mycl	AW536278|L-myc|Lmyc-1|Lmyc1|Mycl1|bHLHe38	v-myc avian myelocytomatosis viral oncogene lung carcinoma derived	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-30858956-2	chr5	30858856	30859056	+	608.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133350, intron 1 of 6)	intron (NM_133350, intron 1 of 6)	-2851.0	NM_001310516	100732.0	Mm.332295	NM_133350	ENSMUSG00000029166	Mapre3	AI790651|EB2|EB3|EBF3|RP3	microtubule-associated protein, RP/EB family, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-55631796-4	chr16	55631693	55631893	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	137062.0	NR_039578	100628589.0		NR_039578	ENSMUSG00000093292	Mir5118	mmu-mir-5118|mu-mir-5118	microRNA 5118	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-46180891-4	chr13	46180798	46180998	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-92823.0	NM_001005422	380842.0	Mm.188108	NM_001005422	ENSMUSG00000063529	Stmnd1	Gm1574	stathmin domain containing 1	protein-coding	1.55666517621432	1.88062638993523	1.11995615608545	0.889137709861921	1.34672541591316	1.66018394342707	1.82474673389544	0.891429889338731	0.186094697915446	0.885859456763791	0.998431161219273
Merged-chr9-22072583-1	chr9	22072483	22072683	+	559.0	f1_c57bl6.idr	intron (NM_012029, intron 8 of 8)	intron (NM_012029, intron 8 of 8)	-1207.0	NM_001310759	319601.0	Mm.347707	NM_177318	ENSMUSG00000038895	Zfp653	E430039K05Rik|Znf653	zinc finger protein 653	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70767698-4	chr14	70767593	70767793	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR67B|LTR|ERVL	-1065.0	NM_023045	65246.0	Mm.152987	NM_023045	ENSMUSG00000022100	Xpo7	4930506C02Rik|BB164534|Ranbp16|exp7	exportin 7	protein-coding	3.92115210478055	4.31402504840765	3.78095689236276	3.94909352546677	4.69131810014078	3.93975441283616	2.80490595733323	4.24554396232595	0.124814970010288	0.806094204752204	0.998431161219273
Merged-chr9-99090673-4	chr9	99090595	99090795	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029094, intron 6 of 23)	RSINE1|SINE|B4	49516.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-8415734-3	chr10	8415636	8415836	+	866.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177387, intron 1 of 7)	intron (NM_177387, intron 1 of 7)	103089.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-20740584-1	chr5	20740484	20740684	+	547.0	f1_c57bl6.idr	Intergenic	Intergenic	141540.0	NM_172992	68770.0	Mm.86410	NM_172992	ENSMUSG00000039987	Phtf2	1110054G21Rik|9530062N20Rik|AI447096|C77923	putative homeodomain transcription factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-133526513-4	chr3	133526417	133526617	+	964.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040400, intron 1 of 10)	L1MCa|LINE|L1	17873.0	NM_001040400	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-138174747-3	chr1	138174660	138174860	+	744.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001268286, intron 2 of 28)	intron (NM_001268286, intron 2 of 28)	366.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-172588683-4	chr1	172588588	172588788	+	926.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029084, intron 1 of 4)	G-rich|Low_complexity|Low_complexity	1880.0	NM_029084	74748.0	Mm.179812	NM_029084	ENSMUSG00000053318	Slamf8	5830408F06Rik|Blame|SBBI42	SLAM family member 8	protein-coding	-1.20406370813143	-1.56956373024278	-1.57884638916872	-1.58647144159385	-1.598104728449	-1.56755213932999	-1.57674499865798	-1.58510656085539	-1.70745470802464	0.626337835847419	1
Merged-chr2-103638146-3	chr2	103638047	103638247	+	874.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178890, intron 1 of 16)	intron (NM_178890, intron 1 of 16)	71837.0	NM_178890	99382.0	Mm.35850	NM_178890	ENSMUSG00000032724	Abtb2	AW539457|BPOZ-2	ankyrin repeat and BTB (POZ) domain containing 2	protein-coding	1.78746426141793	2.48219581300396	1.62282609340703	1.14639552383136	2.37495818975589	2.40127293754373	1.17517127640971	2.24118233410123	0.696744193144412	0.522970548820105	0.947836760490745
Merged-chr13-41467943-2	chr13	41467843	41468043	+	892.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111324, intron 1 of 7)	B4|SINE|B4	19417.0	NM_001111324	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-17510456-2	chr10	17510356	17510556	+	595.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-212772.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-140794126-2	chr1	140794026	140794226	+	825.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2B2|LINE|L1	-137724.0	NR_040604	75910.0	Mm.483845	NR_040604	ENSMUSG00000102368	4930590L20Rik	-	RIKEN cDNA 4930590L20 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-114308538-2	chr5	114308438	114308638	+	556.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TCTCCC)n|Simple_repeat|Simple_repeat	-6403.0	NM_001164573	231646.0	Mm.238285	NM_146163	ENSMUSG00000066952	Myo1h	4631401O15Rik	myosin 1H	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-87874576-2	chr13	87874476	87874676	+	570.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3B|LINE|L1	-946896.0	NM_010103	13612.0	Mm.125580	NM_010103	ENSMUSG00000034488	Edil3	Del-1|Del1|Sox2-cre|Sox2Cre|Tg(Sox2-cre)1Amc	EGF-like repeats and discoidin I-like domains 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-23764808-2	chr13	23764719	23764919	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_030609)	TTS (NM_030609)	1151.0	NM_030609	80838.0	Mm.480242	NM_030609	ENSMUSG00000049539	Hist1h1a	H1.1|H1a|H1f1|H1var3	histone cluster 1, H1a	protein-coding	0.365758375093673	0.222008979224852	0.212947977937976	1.34538011613742	0.195726938044386	0.453899358798097	0.214957297900397	0.9408411352352	-0.770479724215849	0.685381284797975	1
Merged-chr2-118703070-4	chr2	118703006	118703206	+	750.708313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081971, exon 1 of 1)	exon (NM_001081971, exon 1 of 1)	857.0	NM_001081971	383787.0	Mm.35758	NM_001081971	ENSMUSG00000078137	Ankrd63	Gm1337	ankyrin repeat domain 63	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120624819-2	chr8	120624719	120624919	+	576.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001308449, intron 2 of 3)	intron (NM_001308449, intron 2 of 3)	9563.0	NM_197988	68918.0	Mm.473736	NM_197988	ENSMUSG00000043687	1190005I06Rik	-	RIKEN cDNA 1190005I06 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-17597298-7	chr15	17597214	17597414	+	939.1047359999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA4|LINE|L1	772313.0	NR_045711	70886.0	Mm.399021	NR_045711	ENSMUSG00000098150	4921515E04Rik	-	RIKEN cDNA 4921515E04 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-134245587-4	chr4	134245466	134245666	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024215)	promoter-TSS (NM_024215)	25.0	NM_024215	68040.0	Mm.300404	NM_024215	ENSMUSG00000028840	Zfp593	3110024A21Rik|AV062409|E130106C14Rik|ZNF593	zinc finger protein 593	protein-coding	1.84736638876169	2.92562083820013	3.8050277921816	1.96375351602321	3.64536836221745	2.52017063112419	3.72493083999579	2.17352389970196	0.485148301930968	0.547216640956648	0.957755813988636
Merged-chr11-31612735-1	chr11	31612635	31612835	+	685.5	f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	59127.0	NM_001024919	69556.0	Mm.34183	NM_001024919	ENSMUSG00000044502	Bod1	2310022M17Rik|BOD2.1|Fam44b	biorientation of chromosomes in cell division 1	protein-coding	2.84581997254274	3.62148760924135	3.70655641686799	2.65074343208633	2.16958333730756	1.33278171071945	1.28218273508963	1.52958149871948	-3.44838727453667	0.000169708251244482	0.00474260776032135
Merged-chr5-5269351-1	chr5	5269251	5269451	+	863.0	f0_balb.idr	intron (NM_011074, intron 2 of 14)	intron (NM_011074, intron 2 of 14)	-3283.0	NM_001310448	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	-1.26687315729308	-1.51144556179868	-1.52074032698608	-1.52837532385482	-1.39377469321613	-1.50943134740853	-1.5186361958831	-1.52700866306571	-0.563662181339258	0.873093626595385	1
Merged-chr11-32238650-4	chr11	32238542	32238742	+	898.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001284359, intron 9 of 13)	intron (NM_001284359, intron 9 of 13)	12137.0	NM_010822	268395.0	Mm.263161	NM_010822	ENSMUSG00000020287	Mpg	9830006D05|AI326268|APNG|Aag|Mid1	N-methylpurine-DNA glycosylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-85090504-1	chr1	85090404	85090604	+	889.0	f1_balb.idr	intron (NM_213615, intron 5 of 6)	Lx2B2|LINE|L1	19349.0	NM_213615	381287.0	Mm.487565	NM_213615	ENSMUSG00000089844	A530032D15Rik	Gm1888	RIKEN cDNA A530032D15Rik gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-5392226-2	chr2	5392126	5392326	+	575.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_030601, intron 1 of 1)	ID_B1|SINE|B4	12836.0	NR_030601	100124465.0		NR_030601	ENSMUSG00000078031	Mir466d	Mirn466d	microRNA 466d	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-44911160-3	chr4	44911057	44911257	+	610.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138590, intron 6 of 8)	intron (NM_138590, intron 6 of 8)	-70237.0	NM_080289	76238.0	Mm.196574	NM_080289	ENSMUSG00000035637	Grhpr	1110059D05Rik|6430629L09Rik|Glxr	glyoxylate reductase/hydroxypyruvate reductase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-19857449-3	chr15	19857362	19857562	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	672089.0	NR_155419	102639102.0	Mm.463245	NR_155419	ENSMUSG00000115803	Gm35496	-	predicted gene, 35496	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-29628046-2	chr2	29627946	29628146	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_054050, intron 1 of 23)	intron (NM_054050, intron 1 of 23)	8326.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-86153635-2	chr15	86153535	86153735	+	565.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145475, intron 6 of 12)	intron (NM_145475, intron 6 of 12)	-32093.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-33810440-4	chr17	33810351	33810551	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357162)	promoter-TSS (NM_001357162)	-72.0	NM_001357162	80880.0	Mm.196330	NM_030697	ENSMUSG00000042099	Kank3	0610013D04Rik|Ankrd47|D17Ertd288e|NG28	KN motif and ankyrin repeat domains 3	protein-coding	4.96119967248093	4.94309108522301	5.42731497472264	5.79283493893149	6.0569179847189	5.42897722695549	6.3927173405053	5.95583299004828	0.758139654980182	0.0109108946846823	0.115764368652658
Merged-chr16-52062087-4	chr16	52061998	52062198	+	737.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033238, intron 3 of 17)	intron (NM_001033238, intron 3 of 17)	30549.0	NM_001033238	208650.0	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-26454898-2	chr2	26454798	26454998	+	970.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_152209, intron 1 of 2)	intron (NR_152209, intron 1 of 2)	8974.0	NR_152207	100125929.0	Mm.392411	NR_152207		0610009E02Rik	-	RIKEN cDNA 0610009E02 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126601076-1	chr8	126600976	126601176	+	718.0	f1_balb.idr	Intergenic	Intergenic	-7640.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-68070762-4	chr7	68070645	68070845	+	967.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010513, intron 2 of 20)	L1MD|LINE|L1	118488.0	NM_010513	16001.0	Mm.275742	NM_010513	ENSMUSG00000005533	Igf1r	A330103N21Rik|CD221|D930020L01|IGF-1R|hyft	insulin-like growth factor I receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-47226077-4	chr13	47225997	47226197	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146042, intron 3 of 7)	MER54A|LTR|ERVL	32094.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	5.81322748950129	5.79137928742071	5.85264110552459	6.65791674718265	6.64164854273965	6.68670965836701	6.12649382920688	6.25856667588315	0.397119450263413	0.118756032260301	0.540665902501553
Merged-chr11-88632091-2	chr11	88631960	88632160	+	845.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_054043, intron 5 of 13)	intron (NM_054043, intron 5 of 13)	12809.0	NR_131025	68397.0	Mm.426889	NR_131025		0610039H22Rik	-	RIKEN cDNA 0610039H22 gene	ncRNA	2.44991097785591	1.26186374245349	1.98241733273701	2.4342220412625	2.06475375200363	1.26776301438904	1.9979450944675	2.27112168826536	-0.423961097052728	0.685908040661131	0.996533206832645
Merged-chr17-87036667-2	chr17	87036567	87036767	+	681.833374	f1_balb.idr|f1_c57bl6.idr	TTS (NM_019936)	TTS (NM_019936)	11106.0	NM_019936	56724.0	Mm.109329	NM_019936	ENSMUSG00000024146	Cript	1200020A08Rik|AA589469	cysteine-rich PDZ-binding protein	protein-coding	1.60428422997829	1.03306267680767	1.00737572789881	1.1302063760209	1.39796007300738	1.57938327314025	0.835817033946837	0.990946605422718	0.0551838274965126	0.967193329980518	0.998431161219273
Merged-chr5-73180156-3	chr5	73180061	73180261	+	717.027771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028194, intron 3 of 62)	intron (NM_028194, intron 3 of 62)	76457.0	NM_028194	72313.0	Mm.260594	NM_028194	ENSMUSG00000070733	Fryl	2010313D22Rik|2310004H21Rik|2510002A14Rik|9030227G01Rik|mKIAA0826	FRY like transcription coactivator	protein-coding	3.71083822936262	3.23622316790919	3.21880002374969	4.29932339027714	2.43626626464007	2.90927117562345	2.9305944312192	1.5315798738107	-1.89985776940636	0.00576969035521324	0.0745956302606126
Merged-chr10-80407854-2	chr10	80407754	80407954	+	548.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-1033.0	NM_025650	66594.0	Mm.379119	NM_025650	ENSMUSG00000020163	Uqcr11	0710008D09Rik|AL022707|Uqcr	ubiquinol-cytochrome c reductase, complex III subunit XI	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-28293378-2	chr6	28293278	28293478	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31777.0	NM_001081678	627049.0	Mm.84441	NM_001081678	ENSMUSG00000039841	Zfp800	AA407452|Znf800	zinc finger protein 800	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-98329377-4	chr5	98329245	98329445	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024614)	promoter-TSS (NM_001024614)	41.0	NM_001024614	75784.0	Mm.443240	NM_001024614	ENSMUSG00000057816	1700007G11Rik	4930428O21Rik	RIKEN cDNA 1700007G11 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140756853-1	chr5	140756753	140756953	+	544.0	f0_balb.idr	Intergenic	Intergenic	32726.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-111141652-4	chr5	111141566	111141766	+	948.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001267622, intron 5 of 22)	intron (NM_001267622, intron 5 of 22)	137522.0	NR_030482	735278.0		NR_030482	ENSMUSG00000076163	Mir701	Mirn701|mir-701|mmu-mir-701	microRNA 701	ncRNA	0.958923967435089	0.552824645377292	1.19295383857408	0.5327030444685	1.35699141016845	1.49047524962732	0.544039922403115	0.534253912045728	0.973831000380104	0.563427226553518	0.960367595640396
Merged-chr13-112673386-3	chr13	112673282	112673482	+	840.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178746, intron 2 of 14)	intron (NM_178746, intron 2 of 14)	12616.0	NM_178746	268706.0	Mm.40834	NM_175376	ENSMUSG00000047789	Slc38a9	4833412L08Rik|6720411P22Rik|9130023D20Rik|9430067K09Rik|A730092C09	solute carrier family 38, member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-35796260-4	chr7	35796151	35796351	+	868.49585	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177739, intron 2 of 6)	intron (NM_177739, intron 2 of 6)	-6341.0	NR_033567	78547.0	Mm.406883	NR_033567	ENSMUSG00000044997	E130304I02Rik	-	RIKEN cDNA E130304I02 gene	ncRNA	3.82653555772242	3.3385025175586	4.54548239472965	4.34082655101022	3.66939017260497	3.36491752344183	4.77838553920209	4.31407100147909	0.0718879516166147	0.88675595470042	0.998431161219273
Merged-chr8-4279744-1	chr8	4279644	4279844	+	725.0	f1_balb.idr	Intergenic	B3|SINE|B2	-3839.0	NM_011592	21856.0	Mm.195249	NM_011592	ENSMUSG00000002949	Timm44	0710005E20Rik|D8Ertd118e|Mimt44|Tim44	translocase of inner mitochondrial membrane 44	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-151733466-2	chr5	151733366	151733566	+	701.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-82258.0	NM_027009	69263.0	Mm.12553	NM_027009	ENSMUSG00000033970	Rfc3	2810416I22Rik|38kDa|AU022547|Recc3	replication factor C (activator 1) 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-112990625-3	chr13	112990515	112990715	+	935.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001081062, exon 3 of 3)	3' UTR (NM_001081062, exon 3 of 3)	2813.0	NM_001081062	218630.0	Mm.25457	NM_001081062	ENSMUSG00000042417	Ccno	C86987|Ccnu|E130318K11|UDG2|Ung2	cyclin O	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-52835326-2	chr5	52835226	52835426	+	983.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_024213, intron 1 of 27)	B3|SINE|B2	1191.0	NM_024213	52206.0	Mm.272568	NM_024213	ENSMUSG00000029176	Anapc4	2610306D21Rik|APC4|D5Ertd249e	anaphase promoting complex subunit 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28894550-4	chr17	28894451	28894651	+	748.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MMERVK10C-int|LTR|ERVK	-10714.0	NR_045457	74179.0	Mm.248931	NR_045457	ENSMUSG00000085333	1700030A11Rik	-	RIKEN cDNA 1700030A11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166957923-2	chr2	166957823	166958023	+	712.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_111895, intron 3 of 11)	B4A|SINE|B4	6794.0	NR_111895	20853.0	Mm.73276	NM_011490	ENSMUSG00000039536	Stau1	5830401L18Rik|AW549911|C85792|Stau	staufen double-stranded RNA binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-55154690-4	chr11	55154559	55154759	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-2953.0	NM_172258	215332.0	Mm.87054	NM_172258	ENSMUSG00000049491	Slc36a3	PAT3|TRAMD2|tramdorin2	solute carrier family 36 (proton/amino acid symporter), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-92065476-4	chr2	92065403	92065603	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41333.0	NM_011957	26427.0	Mm.10353	NM_011957	ENSMUSG00000027230	Creb3l1	Oasis	cAMP responsive element binding protein 3-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-109437503-3	chr13	109437397	109437597	+	944.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011056, intron 3 of 16)	intron (NM_011056, intron 3 of 16)	112753.0	NR_030644	100124489.0		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA	2.67270909120905	1.23785481427337	1.84434188202055	2.62199147883019	1.8506969838727	2.56126115817252	1.47177316289017	1.63152015382156	-0.664651400701928	0.517625255109487	0.947641799425091
Merged-chr17-26716345-4	chr17	26716263	26716463	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029870, intron 1 of 8)	CpG	713.0	NM_029870	77128.0	Mm.275414	NM_029870	ENSMUSG00000048249	Crebrf	A930001N09Rik|LRF	CREB3 regulatory factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-57064684-2	chr19	57064584	57064784	+	719.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001103177, intron 10 of 21)	intron (NM_001103177, intron 10 of 21)	54340.0	NM_001347459	226251.0	Mm.217161	NM_178688	ENSMUSG00000025085	Ablim1	2210411C18Rik|2610209L21Rik|4833406P10Rik|9330196J19Rik|AV079770|AW060987|AW215784|Limab1|mKIAA0059	actin-binding LIM protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-38275182-2	chr2	38275082	38275282	+	549.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146122, intron 1 of 21)	intron (NM_146122, intron 1 of 21)	12202.0	NM_146122	227801.0	Mm.314245	NM_146122	ENSMUSG00000035392	Dennd1a	6030446I19Rik|connecdenn	DENN/MADD domain containing 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-7063260-2	chr19	7063160	7063360	+	997.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134147, intron 1 of 10)	intron (NM_134147, intron 1 of 10)	6492.0	NM_134147	107227.0	Mm.439977	NM_134147	ENSMUSG00000036278	Macrod1	AI604841|AW743046|D930010J01Rik|Lrp16	MACRO domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135310447-2	chr4	135310347	135310547	+	738.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37687.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-32347381-2	chr4	32347281	32347481	+	573.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME1|LINE|L1	-70054.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88527296-2	chr3	88527196	88527396	+	789.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5099.0	NM_001029890	72640.0	Mm.275154	NM_001029890	ENSMUSG00000074480	Mex3a	2700083E18Rik|Gm411|Rkhd4	mex3 RNA binding family member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-95727078-2	chr16	95726978	95727178	+	704.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	24671.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-100599529-4	chr15	100599432	100599632	+	949.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304965, intron 1 of 10)	CpG	452.0	NM_001304965	19009.0	Mm.28825	NM_010127	ENSMUSG00000009739	Pou6f1	2310038G18Rik|C79593|Emb|cns-1	POU domain, class 6, transcription factor 1	protein-coding	3.39059932597096	3.85859862328461	3.43833728134811	2.70485607009873	3.54551456442521	3.95087068550866	3.46486628511317	2.71973499445614	0.126976916876804	0.829302794037837	0.998431161219273
Merged-chr6-135250801-3	chr6	135250691	135250891	+	832.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080553, intron 1 of 5)	(A)n|Simple_repeat|Simple_repeat	-2907.0	NM_001080552	14840.0	Mm.272306	NM_010352	ENSMUSG00000030206	Gsg1	-	germ cell associated 1	protein-coding	2.02388389814339	2.07358500973954	2.90151045880598	2.8220188368209	2.52295602782976	2.82214871828504	2.83106296661501	2.83616462371192	0.471770473880256	0.530673796413111	0.95049127329287
Merged-chr11-119300119-4	chr11	119300010	119300210	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138669)	promoter-TSS (NM_138669)	-67.0	NM_138669	192170.0	Mm.197555	NM_138669	ENSMUSG00000025580	Eif4a3	2400003O03Rik|Ddx48|eIF4A-III|mKIAA0111	eukaryotic translation initiation factor 4A3	protein-coding	7.10366848433444	6.26470532800944	6.61010021725096	6.93646999986507	6.46002496407231	6.32161845446231	6.62080993278598	6.61415315449895	-0.280506026117167	0.188952593406213	0.667555616405381
Merged-chr16-23489457-2	chr16	23489357	23489557	+	817.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359083, intron 5 of 10)	Lx8|LINE|L1	31358.0	NM_008555	17174.0	Mm.1213	NM_008555	ENSMUSG00000022887	Masp1	AW048060|CCPII|Crarf|Masp1/3	mannan-binding lectin serine peptidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-184883019-2	chr1	184882919	184883119	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178692)	promoter-TSS (NM_178692)	17.0	NM_178692	226777.0	Mm.169542	NM_178692	ENSMUSG00000039349	C130074G19Rik	-	RIKEN cDNA C130074G19 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-9709071-3	chr3	9708964	9709164	+	848.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053182, intron 2 of 7)	intron (NM_053182, intron 2 of 7)	-98979.0	NM_133218	170753.0	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10874355-1	chr19	10874255	10874455	+	543.0	f1_c57bl6.idr	exon (NM_134142, exon 2 of 4)	exon (NM_134142, exon 2 of 4)	-4576.0	NM_133804	98170.0	Mm.490254	NM_133804	ENSMUSG00000024736	Tmem132a	6720481D13Rik|Hspa5bp1|Orai1|R74613	transmembrane protein 132A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-130065694-3	chr3	130065601	130065801	+	951.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	-4794.0	NM_207209	99683.0	Mm.192303	NM_207209	ENSMUSG00000001052	Sec24b	AI605202|SEC24	Sec24 related gene family, member B (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-46173117-3	chr9	46173033	46173233	+	761.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027498, intron 4 of 24)	B4A|SINE|B4	-55497.0	NM_009692	11806.0	Mm.26743	NM_009692	ENSMUSG00000032083	Apoa1	Alp-1|Apoa-1|Brp-14|Ltw-1|Lvtw-1|Sep-1|Sep-2|Sep2|apo-AI|apoA-I	apolipoprotein A-I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-102037294-5	chr2	102037208	102037408	+	974.8800050000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178886, intron 4 of 5)	MIRb|SINE|MIR	149152.0	NM_178886	241576.0	Mm.489740	NM_178886	ENSMUSG00000048058	Ldlrad3	6430500P08|AI194318|Lrad3	low density lipoprotein receptor class A domain containing 3	protein-coding	2.53291350238105	2.60690641982948	3.26385884551025	2.56429256981816	1.56158241556989	3.63218555804364	4.20805661510389	1.36739527992287	0.752488630414639	0.396351320805038	0.883276804275027
Merged-chr10-128806763-3	chr10	128806563	128806763	+	879.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001359824, exon 2 of 7)	exon (NM_001359824, exon 2 of 7)	987.0	NM_001359824	74330.0	Mm.296915	NM_028873	ENSMUSG00000025354	Dnajc14	5730551F12Rik|DNAJ|DRIP78|HDJ3|LIP6	DnaJ heat shock protein family (Hsp40) member C14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-110716558-2	chr11	110716458	110716658	+	760.916687	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	237218.0	NM_001356346	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-146804763-1	chr1	146804663	146804863	+	708.0	f1_c57bl6.idr	intron (NM_001357572, intron 7 of 8)	ORR1A2|LTR|ERVL-MaLR	307076.0	NM_001145807	215378.0	Mm.441817	NM_153539	ENSMUSG00000035131	Brinp3	B830045N13Rik|Fam5c	bone morphogenetic protein/retinoic acid inducible neural specific 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-83148513-4	chr15	83148401	83148601	+	861.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347082, intron 1 of 7)	PB1|SINE|Alu	877.0	NM_178627	73826.0	Mm.23758	NM_178627	ENSMUSG00000041815	Poldip3	1110008P04Rik|AA408269|AL022852|C77954|PDIP46|SKAR|mKIAA1649	polymerase (DNA-directed), delta interacting protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-28123265-4	chr5	28123158	28123358	+	978.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42438.0	NM_010134	13799.0	Mm.4298	NM_010134	ENSMUSG00000039095	En2	BB131122|En-2	engrailed 2	protein-coding	4.03224306702448	5.0304557831615	3.19967486210648	3.21499555241155	4.24908082007794	3.21689368676599	4.61704397483359	4.35608592674521	0.150255379840648	0.785331473968505	0.998431161219273
Merged-chr11-69546952-2	chr11	69546852	69547052	+	954.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081330, intron 1 of 85)	intron (NM_001081330, intron 1 of 85)	2156.0	NM_001081330	327954.0	Mm.247478	NM_177617	ENSMUSG00000005237	Dnah2	2900022L05Rik|4930564A01|D130094J20|D330014H01Rik|Dnahc2|Dnhd3	dynein, axonemal, heavy chain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-30391004-4	chr6	30390889	30391089	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311086)	promoter-TSS (NM_001311086)	31.0	NM_172735	232679.0	Mm.29780	NM_172735	ENSMUSG00000039130	Zc3hc1	1110054L24Rik|AU018540|AU019789|HSPC216|Nipa	zinc finger, C3HC type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116021473-5	chr11	116021367	116021567	+	865.6333619999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008211)	TTS (NM_008211)	3037.0	NM_008211	15081.0	Mm.18516	NM_008211	ENSMUSG00000016559	H3f3b	9430068D06Rik|H3.3B	H3 histone, family 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-76648183-4	chr2	76648089	76648289	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011871)	promoter-TSS (NM_011871)	-195.0	NM_011871	23992.0	Mm.277250	NM_011871	ENSMUSG00000002731	Prkra	AV120107|PRK|Pact|RAX|lear	protein kinase, interferon inducible double stranded RNA dependent activator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-29500883-2	chr17	29500783	29500983	+	733.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9838.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44998665-4	chr7	44998489	44998689	+	990.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045611, intron 1 of 7)	intron (NR_045611, intron 1 of 7)	941.0	NM_016849	54131.0	Mm.3960	NM_016849	ENSMUSG00000003184	Irf3	C920001K05Rik|IRF-3	interferon regulatory factor 3	protein-coding	2.25425856521543	2.24897961182997	1.92901278078257	2.29701199674102	1.66224486716238	1.21225643864376	2.29135397051974	1.16382266787715	-1.37971262322098	0.195428770461106	0.676241411649401
Merged-chr18-39272453-1	chr18	39272353	39272553	+	577.0	f0_balb.idr	intron (NM_001361073, intron 17 of 21)	intron (NM_001361073, intron 17 of 21)	214792.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-154713763-1	chr2	154713663	154713863	+	546.0	f1_balb.idr	Intergenic	B3|SINE|B2	56737.0	NM_029362	75608.0	Mm.262480	NM_029362	ENSMUSG00000038467	Chmp4b	2010012F05Rik|C76846|Snf7-2	charged multivesicular body protein 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-118478632-2	chr13	118478492	118478692	+	592.5	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	-77576.0	NR_045982	75890.0	Mm.141235	NR_045982	ENSMUSG00000100727	1700003P14Rik	1700030O10Rik|4930584L06Rik	RIKEN cDNA 1700003P14 gene	ncRNA	-1.15494470793829	-1.27058668761078	-1.28071119605555	-0.867933662602369	-1.29849590170856	-1.2683926643954	-1.27841922926656	-1.2875391062064	-2.30070480102198	0.49414047531975	1
Merged-chr15-59737397-4	chr15	59737302	59737502	+	999.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57557.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-11497546-4	chr8	11497449	11497649	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026995)	promoter-TSS (NM_026995)	-19.0	NM_026995	69225.0	Mm.64911	NM_026995	ENSMUSG00000031505	Naxd	0710008K08Rik|2810407E01Rik|Carkd	NAD(P)HX dehydratase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-80013276-2	chr9	80013176	80013376	+	876.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357352)	promoter-TSS (NM_001357352)	-425.0	NM_001357352	70598.0	Mm.23049	NM_001081243	ENSMUSG00000034898	Filip1	5730485H21Rik|AI843021	filamin A interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-74224659-2	chr18	74224579	74224779	+	724.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MYSERV6-int|LTR|ERVK	8467.0	NM_028868	74322.0	Mm.17537	NM_028868	ENSMUSG00000024560	Cxxc1	2410002I16Rik|5830420C16Rik|AI426635|Cfp1|Cgbp|PHF18	CXXC finger 1 (PHD domain)	protein-coding	-0.24990435200291	-0.0356034683986877	-0.37763695724585	-0.380508523895467	-0.246107884435884	-0.37305693760789	0.175494031067268	-0.380007540435393	0.721937057480626	0.761878872835178	1
Merged-chr17-81666771-2	chr17	81666671	81666871	+	821.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 1 of 8)	intron (NR_104580, intron 1 of 8)	71616.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114670807-2	chr11	114670707	114670907	+	648.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001048058, intron 2 of 3)	ID_B1|SINE|B4	2026.0	NM_001048058	67671.0	Mm.238817	NM_023372	ENSMUSG00000057322	Rpl38	0610025G13Rik|Rbt|Ts|Tss	ribosomal protein L38	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78929944-2	chr15	78929844	78930044	+	618.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008495, intron 3 of 3)	intron (NM_008495, intron 3 of 3)	3219.0	NM_008495	16852.0	Mm.43831	NM_008495	ENSMUSG00000068220	Lgals1	AA410090|Gal-1|Galbp|L-14.5|L14|Lect14|galectin-1	lectin, galactose binding, soluble 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-20184513-2	chr13	20184410	20184610	+	847.25	f0_balb.idr|f0_c57.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	94003.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	0.304883484051199	0.139974560654277	-0.0574463144002982	-0.0614226785596843	0.725056959617703	-0.0511289909997407	0.12335796363692	-0.0607280624395813	1.09427792539001	0.612290020029352	1
Merged-chr7-131541988-2	chr7	131541888	131542088	+	582.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008257)	promoter-TSS (NM_008257)	-975.0	NM_008257	15373.0	Mm.323562	NM_008257	ENSMUSG00000040148	Hmx3	Nkx-5.1|Nkx5-1|Nkx5.1	H6 homeobox 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-69559323-2	chr13	69559224	69559424	+	856.125	f0_balb.idr|f1_balb.idr	Intergenic	ERVL-E-int|LTR|ERVL	-25460.0	NM_001169131	210106.0	Mm.315959	NM_198600	ENSMUSG00000034575	Papd7	LAK-1|POLK|Pols|TRF4|TRF4-1	PAP associated domain containing 7	protein-coding	1.1561735143663	1.73944092441422	1.65495507751222	1.26701378974878	4.08956481621166	3.75343027608643	4.80926032279587	4.16305206915634	5.85861351702913	8.38139793765656e-08	7.73538557353872e-06
Merged-chr3-94443301-4	chr3	94443163	94443363	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030116)	promoter-TSS (NM_030116)	-73.0	NM_030116	78523.0	Mm.218515	NM_030116	ENSMUSG00000028140	Mrpl9	8030480E20Rik|AA409733|C330013D18Rik|L9mt	mitochondrial ribosomal protein L9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-87689439-4	chr16	87689322	87689522	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9532.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-101877269-2	chr5	101877169	101877369	+	616.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 44 of 66)	intron (NM_172882, intron 44 of 66)	112139.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-23893350-1	chr19	23893250	23893450	+	554.0	f0_balb.idr	exon (NM_177034, exon 2 of 13)	exon (NM_177034, exon 2 of 13)	134474.0	NM_177034	319924.0	Mm.22879	NM_177034	ENSMUSG00000024897	Apba1	6430513E09Rik|Lin-10|Mint|Mint1|Urop11|X11|X11alpha	amyloid beta (A4) precursor protein binding, family A, member 1	protein-coding	1.03284155762849	1.45344338640551	0.603805408358022	1.33756377812078	1.65979395584593	0.61929498068077	0.606619337782417	0.595614365989008	-0.631899737480298	0.699859714342313	0.998431161219273
Merged-chr14-62277950-2	chr14	62277850	62278050	+	680.0	f0_balb.idr|f0_c57.idr	intron (NM_173419, intron 1 of 1)	intron (NM_173419, intron 1 of 1)	15029.0	NM_173419	239133.0	Mm.127330	NM_173419	ENSMUSG00000048281	Dleu7	BC038059	deleted in lymphocytic leukemia, 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-86772847-4	chr6	86772752	86772952	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013471, intron 1 of 12)	intron (NM_013471, intron 1 of 12)	2262.0	NM_001331120	11746.0	Mm.259702	NM_013471	ENSMUSG00000029994	Anxa4	AI265406|AIV|AW106930|Anx4|Xanx-4	annexin A4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96575710-4	chr3	96575620	96575820	+	842.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8919.0	NR_040409	100038464.0	Mm.475126	NR_040409	ENSMUSG00000074398	Gm15441	-	predicted gene 15441	ncRNA	2.07062876273263	2.52315169103261	1.76613716998968	1.14216493007584	2.17525743987889	1.99403829986721	1.16806864565237	1.98865708185071	-0.232317215342482	0.833166585106738	0.998431161219273
Merged-chr17-63450466-2	chr17	63450366	63450566	+	656.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_015794, intron 4 of 8)	intron (NM_015794, intron 4 of 8)	50114.0	NM_015794	50758.0	Mm.136366	NM_015794	ENSMUSG00000023965	Fbxl17	6330576B01Rik|AI452053|BB073797|C130023C01Rik|Fbx13|Fbxo13	F-box and leucine-rich repeat protein 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-127272327-2	chr1	127272227	127272427	+	876.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145128, intron 2 of 17)	ID_B1|SINE|B4	67341.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115187903-4	chr11	115187812	115188012	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025400)	promoter-TSS (NM_025400)	425.0	NM_001033393	320534.0	Mm.260587	NM_001033393	ENSMUSG00000045980	Tmem104	C630005D06Rik|mFLJ00021	transmembrane protein 104	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-59550462-2	chr1	59550362	59550562	+	903.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357842, intron 5 of 18)	intron (NM_001357842, intron 5 of 18)	26168.0	NM_001357842	381260.0	Mm.486706	NM_001013771	ENSMUSG00000047361	Gm973	AW554518	predicted gene 973	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-50406951-4	chr3	50406848	50407048	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011990, intron 6 of 11)	intron (NM_011990, intron 6 of 11)	36665.0	NM_011990	26570.0	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	3.08173679046401	3.63099333068579	3.65997862007834	2.69994628765572	3.70635741745551	3.04526959262266	3.06278363611929	4.03098846776077	0.341308823822228	0.563920944121882	0.960367595640396
Merged-chr8-91059364-2	chr8	91059186	91059386	+	782.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	-10771.0	NM_001282001	19651.0	Mm.235580	NM_011250	ENSMUSG00000031666	Rbl2	PRB2|RBR-2|Rb2|p130	RB transcriptional corepressor like 2	protein-coding	-1.5061220274826	-1.47360709383584	-1.48343987814663	-1.49151681994238	-1.50383953926072	-1.47147628845725	-1.0170701920923	-1.49007105122263	2.15652851593596	0.535359572134045	1
Merged-chr4-134916872-2	chr4	134916772	134916972	+	586.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-1956.0	NM_027935	71817.0	Mm.88349	NM_027935	ENSMUSG00000028822	Tmem50a	3200001F09Rik|CAM|Smp1	transmembrane protein 50A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-114775558-2	chr5	114775458	114775658	+	889.833374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027872)	promoter-TSS (NR_027872)	418.0	NM_026718	68420.0	Mm.275554	NM_026718	ENSMUSG00000041870	Ankrd13a	1100001D10Rik|ANKRD13|AU046136	ankyrin repeat domain 13a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167260607-4	chr2	167260506	167260706	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20069.0	NM_008968	19223.0	Mm.2339	NM_008968	ENSMUSG00000017969	Ptgis	Cyp8|Cyp8a1|Pgis	prostaglandin I2 (prostacyclin) synthase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-95047100-4	chr11	95046940	95047140	+	827.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001306162, exon 25 of 26)	exon (NM_001306162, exon 25 of 26)	-5669.0	NM_133667	18604.0	Mm.29768	NM_133667	ENSMUSG00000038967	Pdk2	-	pyruvate dehydrogenase kinase, isoenzyme 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141480995-4	chr7	141480891	141481091	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252588, intron 1 of 7)	intron (NM_001252588, intron 1 of 7)	4611.0	NM_001252588	64540.0	Mm.489619	NM_053082	ENSMUSG00000025511	Tspan4	AI325509|AI746565|D130042I01Rik|NAG-2|Tm4sf7|Tspan-4	tetraspanin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-134928967-5	chr4	134928850	134929050	+	855.06665	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur3|SINE|Alu	-2030.0	NM_026780	68592.0	Mm.29989	NM_026780	ENSMUSG00000028821	Syf2	1110018L13Rik|Cbpin|D4Bwg1551e|Gcipip|Ntc31|mp29|p29	SYF2 homolog, RNA splicing factor (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-85172581-5	chr16	85172448	85172648	+	938.474976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198825, intron 1 of 15)	intron (NM_001198825, intron 1 of 15)	1159.0	NM_001198825	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	1.67413009746669	1.06088069445876	2.74337441287431	1.25706865465424	2.47633847307253	1.75726337184556	1.03967106880357	1.78445041883266	-0.0353446119162174	0.976128225943454	0.998431161219273
Merged-chr16-76040946-2	chr16	76040846	76041046	+	859.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40162.0	NR_155447	102632240.0	Mm.417237	NR_155447	ENSMUSG00000087214	Gm15555	-	predicted gene 15555	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-88730492-2	chr10	88730392	88730592	+	747.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025859)	promoter-TSS (NM_025859)	609.0	NM_001037166	237433.0	Mm.478763	NM_001037166		Gm4925	EG237433	predicted gene 4925	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-8098721-2	chr14	8098621	8098821	+	756.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360314, intron 1 of 19)	intron (NM_001360314, intron 1 of 19)	510.0	NM_001360315	218699.0	Mm.29515	NM_145458	ENSMUSG00000033885	Pxk	C230080L11Rik|D14Ertd813e|Monaka|Slob	PX domain containing serine/threonine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-90676704-3	chr16	90676563	90676763	+	725.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50708.0	NM_025642	66578.0	Mm.180363	NM_025642	ENSMUSG00000022978	Mis18a	2610039C10Rik|2810018N07Rik	MIS18 kinetochore protein A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-73619221-1	chr7	73619121	73619321	+	794.0	f0_balb.idr	Intergenic	Intergenic	-60826.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-9676511-1	chr10	9676411	9676611	+	592.0	f0_balb.idr	Intergenic	Intergenic	-1303.0	NM_177271	320825.0	Mm.101115	NM_177271	ENSMUSG00000060487	Samd5	E130306M17Rik	sterile alpha motif domain containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-30551167-2	chr14	30551067	30551267	+	665.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_009388, intron 1 of 13)	intron (NM_009388, intron 1 of 13)	2036.0	NM_009388	21881.0	Mm.290692	NM_009388	ENSMUSG00000021957	Tkt	p68	transketolase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-106709773-4	chr5	106709669	106709869	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12939.0	NM_026856	52397.0	Mm.249474	NM_026856	ENSMUSG00000049606	Zfp644	1110068L01Rik|AA408882|BM-005|D5Ertd689e|Zep-2	zinc finger protein 644	protein-coding	3.44134603457842	4.19350934544149	3.93968931974625	4.01098965589769	3.22761747548136	4.16139636287518	3.30442025960234	3.91473079535148	-0.305187206039282	0.543624442049303	0.955585568541497
Merged-chr1-85608574-2	chr1	85608477	85608677	+	958.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013817, intron 1 of 16)	intron (NM_001013817, intron 1 of 16)	-4686.0	NM_175397	109032.0	Mm.335802	NM_030194	ENSMUSG00000070034	Sp110	5031415C07Rik|52kDa|5830484A20Rik|Ifi75|Ipr1	Sp110 nuclear body protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111678061-4	chr12	111677964	111678164	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001099792)	promoter-TSS (NM_001099792)	-41.0	NM_001099792	328162.0	Mm.425747	NM_177374	ENSMUSG00000060950	Trmt61a	6720458F09Rik|AI606093|Gcd14|Trm61	tRNA methyltransferase 61A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-5774130-2	chr2	5774030	5774230	+	817.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59368.0	NM_177343	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-69516710-4	chr12	69516614	69516814	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41164.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-70477413-2	chr12	70477313	70477513	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_037248, intron 2 of 4)	AT_rich|Low_complexity|Low_complexity	24259.0	NM_028339	72736.0	Mm.204670	NM_028339	ENSMUSG00000021072	Tmx1	2810425A04Rik|AI465319|Txndc1	thioredoxin-related transmembrane protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-137072776-3	chr5	137072648	137072848	+	970.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008871)	promoter-TSS (NM_008871)	-476.0	NM_008871	18787.0	Mm.250422	NM_008871	ENSMUSG00000037411	Serpine1	PAI-1|PAI1|Planh1	serine (or cysteine) peptidase inhibitor, clade E, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-78587567-4	chr9	78587448	78587648	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172773, intron 1 of 10)	intron (NM_172773, intron 1 of 10)	497.0	NM_172773	235504.0	Mm.46932	NM_172773	ENSMUSG00000049624	Slc17a5	4631416G20Rik|4732491M05|AST|ISSD|NSD|SD|SIALIN|SIASD|SLD	solute carrier family 17 (anion/sugar transporter), member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-82515921-2	chr17	82515821	82516021	+	659.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19C|LTR|ERVK	562304.0	NR_045094	100503434.0	Mm.187281	NR_045094		Gm19689	-	predicted gene, 19689	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-87405225-2	chr11	87405125	87405325	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053269)	promoter-TSS (NM_053269)	160.0	NM_031386	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	0.592187889513839	0.468699369778028	1.14537759448088	1.09972115322831	0.840615963157638	0.470493857390724	0.462484257758578	0.898003364419377	-0.975212552558369	0.563262969573692	1
Merged-chr12-113146256-4	chr12	113146162	113146362	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001347443)	TTS (NM_001347443)	5657.0	NM_001347443	68337.0	Mm.133825	NM_024223	ENSMUSG00000006356	Crip2	0610010I23Rik|AW743261|C77570|CRP2|CRP4|Crp|ESP1|Hlp	cysteine rich protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83502850-4	chr6	83502768	83502968	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149734, intron 1 of 6)	intron (NR_149734, intron 1 of 6)	4101.0	NM_013764	27369.0	Mm.42234	NM_013764	ENSMUSG00000014554	Dguok	dGK|dGK1|dGK2|dGK3	deoxyguanosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-108452682-4	chr9	108452492	108452692	+	864.223816	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_030075, exon 6 of 11)	5' UTR (NM_030075, exon 6 of 11)	209.0	NM_001359428	78267.0	Mm.283194	NM_030075	ENSMUSG00000032609	Klhdc8b	4931406O17Rik	kelch domain containing 8B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-152933888-2	chr2	152933781	152933981	+	753.833313	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010226)	promoter-TSS (NM_010226)	-673.0	NM_010226	14239.0	Mm.205798	NM_010226	ENSMUSG00000074676	Foxs1	FREAC10|Fkh3|Fkhl18	forkhead box S1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-87328382-1	chr18	87328282	87328482	+	576.0	f1_c57bl6.idr	Intergenic	L1_Mus1|LINE|L1	616071.0	NM_001361145	12405.0	Mm.70775	NM_172633	ENSMUSG00000024647	Cbln2	6330593N19Rik|A730004O05	cerebellin 2 precursor protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-65779364-2	chr14	65779264	65779464	+	601.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26547.0	NM_023209	52033.0	Mm.24337	NM_023209	ENSMUSG00000022033	Pbk	2810434B10Rik|AW538537|D14Ertd732e|TOPK	PDZ binding kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-60804968-4	chr18	60804878	60805078	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042605, intron 1 of 8)	intron (NM_001042605, intron 1 of 8)	1129.0	NM_010545	16149.0	Mm.439737	NM_010545	ENSMUSG00000024610	Cd74	CLIP|DHLAG|HLADG|Ia-GAMMA|Ii	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	protein-coding	5.51990042348707	6.3853063274358	5.83496386305914	5.8520027712064	6.14032263275768	6.23256224571076	6.40585067300043	5.67590339453437	0.232514960002022	0.36984602379001	0.86364098252034
Merged-chr1-88268899-3	chr1	88268827	88269027	+	935.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172505, intron 3 of 4)	intron (NM_172505, intron 3 of 4)	481.0	NR_040291	78605.0	Mm.384762	NR_040291		6430706D22Rik	-	RIKEN cDNA 6430706D22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118747960-3	chr9	118747856	118748056	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 1 of 13)	intron (NM_001113514, intron 1 of 13)	36264.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-113587593-3	chr13	113587482	113587682	+	614.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30982.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-90293031-4	chr3	90292918	90293118	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22869.0	NR_105979	102465612.0		NR_105979	ENSMUSG00000099199	Mir7012	Gm27370|mmu-mir-7012	microRNA 7012	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-56686098-1	chr10	56685998	56686198	+	742.5	f0_balb.idr	Intergenic	Intergenic	254117.0	NR_152768	102640560.0	Mm.417249	NR_152768		Gm36595	-	predicted gene, 36595	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45002572-1	chr7	45002472	45002672	+	678.0	f1_balb.idr	TTS (NM_001008422)	TTS (NM_001008422)	4924.0	NM_016849	54131.0	Mm.3960	NM_016849	ENSMUSG00000003184	Irf3	C920001K05Rik|IRF-3	interferon regulatory factor 3	protein-coding	0.245841149588257	0.274708877798811	1.22465176770754	0.25811097758395	0.809056150099389	1.10699933989465	0.26745687106469	0.259388560570495	0.350362609099825	0.859737936682931	1
Merged-chr9-61733671-2	chr9	61733571	61733771	+	898.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	180839.0	NM_018853	56040.0	Mm.3158	NM_018853	ENSMUSG00000007892	Rplp1	2410042H16Rik|Arpp1|C430017H15Rik	ribosomal protein, large, P1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-105539793-1	chr12	105539693	105539893	+	550.0	f1_balb.idr	Intergenic	Intergenic	-23379.0	NM_009747	12062.0	Mm.390475	NM_009747	ENSMUSG00000021070	Bdkrb2	B(2)|B2|B2R|BK-2|BK2|BK2R|BKR2|BRB2	bradykinin receptor, beta 2	protein-coding	0.140143730260186	0.162157638761649	0.154995588067406	0.821386266487468	0.659127807785906	0.939950756617286	0.156579241945343	0.150410458985871	0.963098324079631	0.646937403642048	1
Merged-chr7-67443966-2	chr7	67443866	67444066	+	757.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-71108.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-70145235-3	chr12	70145120	70145320	+	713.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8951.0	NM_001195033	100504285.0	Mm.291105	NM_001195033	ENSMUSG00000090121	Abhd12b	Gm804	abhydrolase domain containing 12B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-101653038-3	chr2	101652933	101653133	+	759.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3501.0	NM_009019	19373.0	Mm.828	NM_009019	ENSMUSG00000061311	Rag1	Rag-1	recombination activating gene 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-96314962-3	chr11	96314846	96315046	+	670.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2219.0	NR_029784	723893.0		NR_029784	ENSMUSG00000065519	Mir10a	Mirn10a|miR-10a|mmu-mir-10a	microRNA 10a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-22390561-3	chr10	22390469	22390669	+	654.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	-12244.0	NR_028580	100038752.0	Mm.392859	NR_028580	ENSMUSG00000096937	Gm10825	-	predicted gene 10825	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85594433-2	chr12	85594333	85594533	+	914.083374	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-4672.0	NM_001205052	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27743258-2	chr2	27743158	27743358	+	705.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290481, intron 4 of 9)	intron (NM_001290481, intron 4 of 9)	32675.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43000581-4	chr4	43000465	43000665	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009503)	promoter-TSS (NM_009503)	-58.0	NM_009503	269523.0	Mm.245976	NM_009503	ENSMUSG00000028452	Vcp	3110001E05|CDC48|p97|p97/VCP	valosin containing protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-80079954-2	chr3	80079854	80080054	+	922.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	194024.0	NM_133187	68659.0	Mm.427274	NM_133187	ENSMUSG00000027955	Fam198b	1110032E23Rik|2210419I08Rik|AV011458|Ened	family with sequence similarity 198, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-181459297-5	chr2	181459081	181459281	+	936.7333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028125, intron 1 of 2)	CpG	245.0	NM_028125	72147.0	Mm.486504	NM_027656	ENSMUSG00000027583	Zbtb46	2610019F01Rik|4933406L05Rik|BZEL|Btbd4	zinc finger and BTB domain containing 46	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-122600365-4	chr6	122600276	122600476	+	948.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001134391, intron 1 of 7)	MRLTR33|LTR|ERVK	2068.0	NM_031159	11810.0	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	4.20400866968955	3.78424909383504	3.27143778518152	3.9058014557564	3.73960947672631	4.29965078244504	2.36638052378619	4.81965031691866	0.329293073052497	0.570051040944823	0.962718661854691
Merged-chr1-57775096-3	chr1	57774996	57775196	+	962.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144882, intron 1 of 13)	CpG	235.0	NM_144882	67198.0	Mm.159989	NM_144882	ENSMUSG00000038305	Spats2l	2810022L02Rik|A230104H11Rik|AA987173|AI480531|AI842453|AW413586	spermatogenesis associated, serine-rich 2-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-83561306-4	chr15	83561231	83561431	+	954.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	HAL1|LINE|L1	-2242.0	NM_009775	12257.0	Mm.1508	NM_009775	ENSMUSG00000041736	Tspo	Bzrp|IBP|PBR|Tspo1	translocator protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-34313466-4	chr7	34313359	34313559	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-27850.0	NM_172741	233103.0	Mm.491097	NM_172741	ENSMUSG00000066571	4931406P16Rik	AA553327|mKIAA0355	RIKEN cDNA 4931406P16 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10268987-2	chr19	10268887	10269087	+	644.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198114, intron 5 of 19)	B1_Mur1|SINE|Alu	-28239.0	NM_001033481	225908.0	Mm.329716	NM_001033481	ENSMUSG00000036098	Myrf	6030439E18|Gm1804|Gm98|Mrf	myelin regulatory factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-34405495-2	chr11	34405395	34405595	+	828.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025382, intron 3 of 3)	intron (NM_001025382, intron 3 of 3)	90673.0	NM_001025382	574403.0	Mm.444796	NM_001025382	ENSMUSG00000069911	Fam196b	EG574403|Gm6041	family with sequence similarity 196, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-8710569-6	chr15	8710529	8710729	+	951.383301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_148938, exon 1 of 10)	5' UTR (NM_148938, exon 1 of 10)	178.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166108522-3	chr2	166108416	166108616	+	816.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252579, intron 3 of 20)	intron (NM_001252579, intron 3 of 20)	46769.0	NM_001355619	72043.0	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	1.63314442335181	2.69749177611077	2.31950838975129	2.92022676753574	1.04456512276264	1.43909905739564	1.11718286784347	2.0302541392001	-2.59886737191507	0.0165604533545823	0.155552442078506
Merged-chr12-117385895-4	chr12	117385793	117385993	+	875.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48881.0	NR_044987	432713.0	Mm.459210	NR_044987	ENSMUSG00000101930	Gm5441	-	predicted gene 5441	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-56724608-4	chr19	56724482	56724682	+	986.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007419, exon 1 of 1)	3' UTR (NM_007419, exon 1 of 1)	2210.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70012469-1	chr8	70012369	70012569	+	663.0	f1_balb.idr	Intergenic	Intergenic	-16085.0	NM_145596	234366.0	Mm.270044	NM_145596	ENSMUSG00000036180	Gatad2a	1110066C11Rik|BC031407|C80248	GATA zinc finger domain containing 2A	protein-coding	1.09694274603907	1.04728486680484	1.55736326942342	0.812099301492323	1.67916180868058	1.23272124758624	1.02502009799577	1.41078306845456	0.820359746573861	0.530976628497986	0.950654387632934
Merged-chr7-144471264-4	chr7	144471164	144471364	+	924.866699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007803)	promoter-TSS (NM_007803)	-329.0	NM_001252572	13043.0	Mm.205601	NM_007803	ENSMUSG00000031078	Cttn	1110020L01Rik|Ems1	cortactin	protein-coding	2.15440208423276	2.19708357866249	2.12409601347373	1.47896230994816	2.17201777496705	2.21315439435549	2.14044709456129	1.484657686026	0.0398133649864521	0.966818624702749	0.998431161219273
Merged-chr1-89454708-4	chr1	89454618	89454818	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178119)	promoter-TSS (NM_178119)	-93.0	NM_178119	347722.0	Mm.291135	NM_178119	ENSMUSG00000055013	Agap1	Centg2|Ggap1|R75364|mKIAA1099	ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-82949756-4	chr13	82949657	82949857	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-251424.0	NR_039537	100628621.0		NR_039537	ENSMUSG00000106655	Mir3961	mmu-mir-3961	microRNA 3961	ncRNA	0.836615651772891	1.27639402636705	1.5038566413808	1.20208195995165	1.00995392318994	1.28562752677666	1.62956322412691	1.67068369471229	0.794126683786423	0.533928899142062	0.952340772830495
Merged-chr14-34363275-3	chr14	34363166	34363366	+	653.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7873.0	NM_183278	69134.0	Mm.27156	NM_183278	ENSMUSG00000043681	Fam25c	2200001I15Rik|Fam25	family with sequence similarity 25, member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-24542863-4	chr5	24542743	24542943	+	893.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_177676)	TTS (NM_177676)	-1865.0	NM_001310476	117590.0	Mm.207071	NM_080444	ENSMUSG00000038204	Asb10	Asb-10|BB137407	ankyrin repeat and SOCS box-containing 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-63125363-2	chr9	63125263	63125463	+	652.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21617.0	NM_172446	207667.0	Mm.36349	NM_172446	ENSMUSG00000022245	Skor1	AV273001|C230094B15Rik|Corl1|Lbxcor1	SKI family transcriptional corepressor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-52361532-4	chr11	52361477	52361677	+	901.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011694, intron 1 of 8)	CpG	715.0	NM_011694	22333.0	Mm.3555	NM_011694	ENSMUSG00000020402	Vdac1	AL033343|Vdac5|mVDAC1|mVDAC5	voltage-dependent anion channel 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-148017599-2	chr4	148017499	148017699	+	828.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_011929, exon 12 of 23)	exon (NM_011929, exon 12 of 23)	16877.0	NM_008725	230899.0	Mm.482123	NM_008725	ENSMUSG00000041616	Nppa	ANP|Anf|Pnd	natriuretic peptide type A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-94011295-3	chr8	94011237	94011437	+	581.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011787, intron 1 of 13)	intron (NM_011787, intron 1 of 13)	1303.0	NM_011787	23802.0	Mm.34641	NM_011787	ENSMUSG00000031751	Amfr	gp78	autocrine motility factor receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3651165-1	chr4	3651065	3651265	+	613.0	f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	-5341.0	NR_040643	70143.0	Mm.417835	NR_040643	ENSMUSG00000085394	2210414B05Rik	-	RIKEN cDNA 2210414B05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91457718-2	chr2	91457618	91457818	+	994.333374	f1_balb.idr|f1_c57bl6.idr	exon (NM_001145857, exon 1 of 12)	exon (NM_001145857, exon 1 of 12)	187.0	NM_001145857	228357.0	Mm.275149	NM_172668	ENSMUSG00000027253	Lrp4	6430526J12Rik|D230026E03|Megf7|mdig	low density lipoprotein receptor-related protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-85175030-2	chr16	85174938	85175138	+	864.9166869999999	f0_balb.idr|f1_balb.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1331.0	NM_001198826	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	3.63856425793739	2.89121717100604	3.07929448846369	3.9732372207974	5.00274632930557	4.64448684523319	4.87295302401508	4.32718042660339	1.67797044840161	0.000227011522388221	0.0059555777965318
Merged-chr7-24888443-2	chr7	24888343	24888543	+	822.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001360119, exon 4 of 6)	exon (NM_001360119, exon 4 of 6)	3530.0	NM_001360115	20085.0	Mm.300281	NM_023133	ENSMUSG00000040952	Rps19	Dsk3	ribosomal protein S19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-16216779-4	chr1	16216681	16216881	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	110899.0	NM_133832	98711.0	Mm.274376	NM_133832	ENSMUSG00000025921	Rdh10	3110069K09Rik|4921506A21Rik|AI875664|AW549993|D1Ertd762e|m366Asp	retinol dehydrogenase 10 (all-trans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-72534140-2	chr14	72534067	72534267	+	576.0	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	175836.0	NM_207636	319448.0	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-86168786-3	chr17	86168676	86168876	+	894.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011104, exon 1 of 15)	exon (NM_011104, exon 1 of 15)	991.0	NM_011104	18754.0	Mm.24614	NM_011104	ENSMUSG00000045038	Prkce	5830406C15Rik|PKC[e]|PKCepsilon|Pkce|R75156	protein kinase C, epsilon	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120677494-2	chr8	120677394	120677594	+	641.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9174.0	NM_001293559	12857.0	Mm.386758	NM_009941	ENSMUSG00000031818	Cox4i1	AL024441|COX|COX IV-1|COXIV|Cox4|Cox4a|IV-1	cytochrome c oxidase subunit 4I1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30563275-4	chr7	30563179	30563379	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_170760)	promoter-TSS (NM_170760)	-61.0	NM_170760	233073.0	Mm.34790	NM_170760	ENSMUSG00000078765	U2af1l4	AA407033|AF419339|AI451269|AW553050|U2af26	U2 small nuclear RNA auxiliary factor 1-like 4	protein-coding	5.85105585124344	5.04495420929313	5.08908446398057	5.45073698666451	5.48475268745915	5.35306499823475	5.1613270330638	4.94580967087757	-0.181723021288058	0.555339951089363	0.959914380895535
Merged-chr7-145281976-7	chr7	145281704	145281904	+	762.142883	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132643, intron 1 of 22)	intron (NR_132643, intron 1 of 22)	2207.0	NR_132644	233979.0	Mm.102235	NM_146206	ENSMUSG00000048677	Tpcn2	D830047E22Rik|Gm35086	two pore segment channel 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-3451988-2	chr8	3451888	3452088	+	744.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_133962, exon 17 of 20)	exon (NM_133962, exon 17 of 20)	15660.0	NM_026951	69129.0	Mm.45279	NM_026951	ENSMUSG00000069633	Pex11g	1810022F11Rik|1810049N02Rik|Pex11c|Pex11gamma	peroxisomal biogenesis factor 11 gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107599047-2	chr9	107598947	107599147	+	1000.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_111986, exon 18 of 18)	non-coding (NR_111986, exon 18 of 18)	6355.0	NM_009153	20347.0	Mm.4083	NM_009153	ENSMUSG00000057969	Sema3b	SemA|Semaa|sema5|semaV	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B	protein-coding	-1.36015291771705	-1.32842431658676	-1.33874579108173	-1.34722415754512	-1.35969949349639	-1.32618761000664	-1.33640923549635	-0.791042329471244	2.42373733289067	0.484013421080845	1
Merged-chr7-31208759-1	chr7	31208659	31208859	+	856.0	f1_c57bl6.idr	Intergenic	Intergenic	46401.0	NR_046062	100038516.0	Mm.387223	NR_046062	ENSMUSG00000100985	Gm10640	EG668322	predicted gene 10640	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-99268461-1	chr10	99268361	99268561	+	1000.0	f0_balb.idr	TTS (NM_026268)	TTS (NM_026268)	5230.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128910335-3	chr10	128910229	128910429	+	902.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007653, intron 1 of 7)	CpG	463.0	NM_007653	12512.0	Mm.371552	NM_007653	ENSMUSG00000025351	Cd63	C75951|ME491|Tspan30	CD63 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-73007348-2	chr6	73007248	73007448	+	807.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48600.0	NM_001190327	19240.0	Mm.3532	NM_025284	ENSMUSG00000079523	Tmsb10	Ptmb10|Tb10	thymosin, beta 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-152226824-4	chr2	152226713	152226913	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007788)	promoter-TSS (NM_007788)	-27.0	NM_007788	12995.0	Mm.23692	NM_007788	ENSMUSG00000074698	Csnk2a1	CK2|Csnk2a1-rs4	casein kinase 2, alpha 1 polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-25206130-4	chr12	25206002	25206202	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	76928.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	2.7320160322293	3.70877946105507	3.83742019097497	2.13494000173508	3.20437080547082	3.21485741379407	3.3882734626994	3.28536937124146	-0.00963268436086159	0.988173982315112	0.998431161219273
Merged-chr2-145743474-3	chr2	145743364	145743564	+	790.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033220, intron 3 of 3)	intron (NR_033220, intron 3 of 3)	42269.0	NR_033220	408057.0	Mm.486711	NR_033220	ENSMUSG00000087594	BC039771	-	cDNA sequence BC039771	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99396901-5	chr15	99396840	99397040	+	894.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001171036, intron 2 of 10)	ID4|SINE|ID	3721.0	NM_001171035	110213.0	Mm.16769	NM_026669	ENSMUSG00000023010	Tmbim6	5031406P05Rik|Bi1|Tegt	transmembrane BAX inhibitor motif containing 6	protein-coding	3.25469979466419	3.34289020976813	2.27625682622562	2.76302642809995	2.26164222947843	2.55541859643475	2.615648114664	3.98985589144078	0.160319425619906	0.829336875212943	0.998431161219273
Merged-chr11-117776174-2	chr11	117776074	117776274	+	773.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_145439, intron 6 of 19)	intron (NM_145439, intron 6 of 19)	3474.0	NR_154387	217353.0	Mm.286963	NM_145439	ENSMUSG00000025572	Tmc6	D11Ertd204e|EVER1	transmembrane channel-like gene family 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-89443333-4	chr10	89443253	89443453	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001079876, intron 1 of 10)	intron (NM_001079876, intron 1 of 10)	614.0	NM_001284344	237436.0	Mm.11982	NM_001033331	ENSMUSG00000074802	Gas2l3	8430435B07Rik|Gm240	growth arrest-specific 2 like 3	protein-coding	7.02730028342827	7.10769660208492	6.31222092986305	6.92033653638796	6.72348352311157	6.99159069625263	6.90514814957872	6.71383168011292	-0.0422358640449058	0.832120584834776	0.998431161219273
Merged-chr16-87435818-2	chr16	87435718	87435918	+	900.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016924, intron 4 of 4)	RMER17B|LTR|ERVK	-3212.0	NM_001081068	78913.0	Mm.249005	NM_001081068	ENSMUSG00000052299	Ltn1	4930528H02Rik|AV266914|C87237|Listerin|Rnf160|Zfp294	listerin E3 ubiquitin protein ligase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-120327692-3	chr7	120327568	120327768	+	654.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR41B|LTR|ERVL	-1016.0	NM_177213	320631.0	Mm.78330	NM_177213	ENSMUSG00000054746	Abca15	4930500I12Rik	ATP-binding cassette, sub-family A (ABC1), member 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-10040630-2	chr17	10040530	10040730	+	794.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-264764.0	NR_045433	71092.0	Mm.243827	NR_045433		4930452A19Rik	4933424P20Rik	RIKEN cDNA 4930452A19 gene	ncRNA	-1.13146769101922	-1.10460487238646	-1.11735372523027	-1.12713099301154	-1.13082009585647	-0.300663969208598	-1.11446766439333	-1.12595147812057	3.06518455575839	0.353555291099784	1
Merged-chr11-53772724-4	chr11	53772629	53772829	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159393, intron 2 of 9)	intron (NM_001159393, intron 2 of 9)	2256.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-14348629-7	chr14	14348529	14348729	+	853.81427	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008369, intron 3 of 11)	intron (NM_008369, intron 3 of 11)	2134.0	NM_008369	16188.0	Mm.425857	NM_008369	ENSMUSG00000068758	Il3ra	CD123|CDw123|SUT-1	interleukin 3 receptor, alpha chain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-143504634-2	chr5	143504534	143504734	+	575.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_009007)	TTS (NM_009007)	23359.0	NM_009007	19353.0	Mm.292510	NM_009007	ENSMUSG00000001847	Rac1	AL023026|D5Ertd559e	Rac family small GTPase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-154003873-1	chr1	154003773	154003973	+	630.333313	f0_balb.idr	Intergenic	Intergenic	103944.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-42036365-2	chr19	42036288	42036488	+	554.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_020033, intron 1 of 8)	intron (NM_020033, intron 1 of 8)	350.0	NM_020033	56642.0	Mm.143737	NM_020033	ENSMUSG00000025172	Ankrd2	Arpp|mArpp	ankyrin repeat domain 2 (stretch responsive muscle)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-12010690-3	chr7	12010534	12010734	+	873.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30665.0	NM_001166731	628946.0	Mm.484974	NM_001166731	ENSMUSG00000095864	Vmn1r77	Gm6935	vomeronasal 1 receptor 77	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-47260538-2	chr4	47260438	47260638	+	656.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009928, intron 9 of 39)	intron (NM_009928, intron 9 of 39)	52526.0	NM_009928	12819.0	Mm.233547	NM_009928	ENSMUSG00000028339	Col15a1	-	collagen, type XV, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-168902842-2	chr2	168902742	168902942	+	703.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52745.0	NM_009564	22722.0	Mm.2095	NM_009564	ENSMUSG00000027551	Zfp64	-	zinc finger protein 64	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-121120347-4	chr7	121120253	121120453	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139310, intron 12 of 28)	intron (NM_139310, intron 12 of 28)	36915.0	NM_139310	246190.0	Mm.221073	NM_139310	ENSMUSG00000034990	Otoa	-	otoancorin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-41079625-4	chr13	41079499	41079699	+	953.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145802, intron 1 of 11)	CpG	107.0	NM_001145803	17152.0	Mm.8149	NM_008547	ENSMUSG00000021363	Mak	A930010O05Rik	male germ cell-associated kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-99194831-4	chr10	99194725	99194925	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153333, intron 12 of 12)	intron (NR_153333, intron 12 of 12)	-68406.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-11188469-4	chr2	11188374	11188574	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008859, intron 1 of 17)	C-rich|Low_complexity|Low_complexity	16092.0	NM_008859	18761.0	Mm.329993	NM_008859	ENSMUSG00000026778	Prkcq	A130035A12Rik|AW494342|PKC-0|PKC-theta|PKCtheta|Pkcq	protein kinase C, theta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-87762506-2	chr4	87762406	87762606	+	583.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43817.0	NM_001286158	70122.0	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-63840634-4	chr4	63840551	63840751	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009403, intron 2 of 3)	intron (NM_009403, intron 2 of 3)	20633.0	NM_009403	21949.0	Mm.4664	NM_009403	ENSMUSG00000028362	Tnfsf8	CD153|CD30LG|Cd30l|Tnlg3a	tumor necrosis factor (ligand) superfamily, member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-56145654-2	chr13	56145554	56145754	+	957.125	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10104.0	NM_001159513	26914.0	Mm.283802	NM_012015	ENSMUSG00000015937	H2afy	H2AF12M|mH2a1|macroH2A1	H2A histone family, member Y	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-29254430-2	chr19	29254330	29254530	+	543.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008413, intron 2 of 24)	intron (NM_008413, intron 2 of 24)	2627.0	NM_008413	16452.0	Mm.275839	NM_008413	ENSMUSG00000024789	Jak2	Fd17	Janus kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115485406-2	chr5	115485306	115485506	+	810.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133760)	promoter-TSS (NM_133760)	-922.0	NM_133760	75387.0	Mm.332616	NM_133760	ENSMUSG00000029524	Sirt4	4930596O17Rik	sirtuin 4	protein-coding	0.409813509508702	0.313625570907106	-0.0254578854728368	-0.0290454962832301	0.50438416722717	-0.0197375368012064	-0.0244303205157209	0.127939082278829	-0.106273494969584	0.960705408541451	1
Merged-chr11-32671662-4	chr11	32671579	32671779	+	851.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271349, intron 1 of 11)	intron (NM_001271349, intron 1 of 11)	29124.0	NM_001271347	103583.0	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-51797027-4	chr3	51796973	51797173	+	819.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 2 of 4)	intron (NM_001004176, intron 2 of 4)	135894.0	NM_001310482	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4964364-4	chr16	4964269	4964469	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271586)	promoter-TSS (NM_001271586)	81.0	NM_001271586	74684.0	Mm.374835	NM_001271586	ENSMUSG00000022543	4930451G09Rik	-	RIKEN cDNA 4930451G09 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-20535385-4	chr16	20535285	20535485	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009679)	promoter-TSS (NM_009679)	-95.0	NM_001302970	11773.0	Mm.18946	NM_009679	ENSMUSG00000022841	Ap2m1	-	adaptor-related protein complex 2, mu 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-9681390-2	chr4	9681290	9681490	+	731.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-12046.0	NM_001290367	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	2.38700289528295	1.22329428424551	1.19421949215197	1.91695556607312	2.24813892052402	1.71956104460891	2.12372787085408	2.80724792821586	1.20508745611638	0.254923536129693	0.753095679534814
Merged-chr15-101189077-2	chr15	101188977	101189177	+	725.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007395, intron 1 of 8)	intron (NM_007395, intron 1 of 8)	-4792.0	NR_105927	102466774.0		NR_105927	ENSMUSG00000106563	Mir6962	mmu-mir-6962	microRNA 6962	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-53570557-4	chr17	53570458	53570658	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151733, intron 1 of 16)	intron (NR_151733, intron 1 of 16)	3587.0	NR_151733	18519.0	Mm.255025	NM_020005	ENSMUSG00000000708	Kat2b	A930006P13Rik|AI461839|AW536563|Pcaf|p/CAF	K(lysine) acetyltransferase 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-59808637-4	chr4	59808520	59808720	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172468, intron 1 of 8)	B3A|SINE|B2	2970.0	NM_172468	209131.0	Mm.259705	NM_172468	ENSMUSG00000028385	Snx30	4732481H14Rik|C030041J06Rik	sorting nexin family member 30	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123620962-4	chr5	123620862	123621062	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359224, intron 12 of 18)	MTA_Mm|LTR|ERVL-MaLR	-47947.0	NM_029929	77573.0	Mm.41372	NM_029929	ENSMUSG00000029434	Vps33a	3830421M04Rik|AI503300|AW048546|AW554476|bf	VPS33A CORVET/HOPS core subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-75582297-3	chr9	75582236	75582436	+	852.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038710, intron 6 of 9)	intron (NM_001038710, intron 6 of 9)	16797.0	NM_001038710	50876.0	Mm.291880	NM_016711	ENSMUSG00000032186	Tmod2	N-Tmod|NTMOD	tropomodulin 2	protein-coding	-0.887089368538095	-0.874506527268186	-0.705147508777669	-0.88341610874111	-0.886543788306144	-0.379186181594846	-0.70084601322295	-0.883028794063228	1.96889884440024	0.489344267088282	1
Merged-chr2-117114624-1	chr2	117114524	117114724	+	759.0	f0_balb.idr	Intergenic	Intergenic	-6447.0	NM_001277256	114715.0	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-164403061-3	chr2	164403012	164403212	+	874.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009036)	promoter-TSS (NM_009036)	-82.0	NM_009036	19668.0	Mm.473794	NM_009036	ENSMUSG00000017007	Rbpjl	RBP-L|Rbpsuhl	recombination signal binding protein for immunoglobulin kappa J region-like	protein-coding	2.63534741869706	2.96483215960483	1.57339450451635	1.74005447296796	2.72810370383164	2.71987731138403	1.31618968263751	2.07963264304232	-0.068929793840337	0.94327605546677	0.998431161219273
Merged-chr8-126652345-2	chr8	126652245	126652445	+	563.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-58909.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-55803180-4	chr16	55803082	55803282	+	906.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18956.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-61449033-3	chr8	61448948	61449148	+	939.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-38686.0	NM_145595	234309.0	Mm.29059	NM_145595	ENSMUSG00000031641	Cbr4	A730083J17Rik|BC009118	carbonyl reductase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-32184238-4	chr18	32184136	32184336	+	927.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011946, intron 1 of 16)	Lx9|LINE|L1	21147.0	NM_011946	26405.0	Mm.211762	NM_011946	ENSMUSG00000024383	Map3k2	9630061B06Rik|AI585793|Mekk2|Mekk2b	mitogen-activated protein kinase kinase kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-83632500-2	chr17	83632400	83632600	+	909.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153512)	promoter-TSS (NM_153512)	-605.0	NM_153512	225030.0	Mm.223506	NM_153512	ENSMUSG00000045053	Kcng3	KV6.3|Kv10.1a|Kv10.1b	potassium voltage-gated channel, subfamily G, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84662393-4	chr8	84662283	84662483	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010499, exon 1 of 1)	exon (NM_010499, exon 1 of 1)	469.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	3.87068415342854	4.37380585688904	4.23725159317455	2.84767845087794	4.43458848036622	4.3470852449812	3.73396829267837	3.90896192755538	0.268245229300276	0.588246050489059	0.968410553480753
Merged-chr9-14309570-2	chr9	14309470	14309670	+	627.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030261, intron 3 of 9)	intron (NM_030261, intron 3 of 9)	33269.0	NM_030261	75747.0	Mm.325126	NM_030261	ENSMUSG00000032009	Sesn3	5630400E15Rik|BC003348|SEST3	sestrin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-79688590-2	chr5	79688490	79688690	+	542.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3B|LINE|L1	-1331981.0	NM_001347367	319387.0	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-37474831-4	chr1	37474739	37474939	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173870, intron 5 of 15)	intron (NM_173870, intron 5 of 15)	13766.0	NR_024017	77633.0	Mm.483177	NR_024017	ENSMUSG00000103948	4930594C11Rik	-	G1 to S phase transition pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-99024783-4	chr6	99024688	99024888	+	966.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001197321, intron 4 of 17)	intron (NM_001197321, intron 4 of 17)	3510.0	NM_001197322	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-14156999-2	chr15	14156881	14157081	+	622.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR15|LTR|ERVK	-983306.0	NM_007666	12563.0	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-124897422-4	chr2	124897300	124897500	+	763.224976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-170727.0	NM_175034	317750.0	Mm.330538	NM_175034	ENSMUSG00000035183	Slc24a5	F630045L20Rik|JSX|NCKX5|NCX5|Oca6	solute carrier family 24, member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-46926470-3	chr9	46926373	46926573	+	590.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_015605, exon 4 of 4)	non-coding (NR_015605, exon 4 of 4)	12870.0	NR_015605	73040.0	Mm.265384	NR_015605	ENSMUSG00000099696	2900052N01Rik	AU067665	RIKEN cDNA 2900052N01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-25139518-2	chr19	25139419	25139619	+	873.5499880000001	f0_c57.idr|f1_c57bl6.idr	intron (NM_028785, intron 23 of 47)	intron (NM_028785, intron 23 of 47)	-97456.0	NM_181404	107351.0	Mm.260722	NM_181404	ENSMUSG00000032702	Kank1	A930031B09Rik|AU015049|AW121052|Ankrd15|D330024H06Rik|mKIAA0172	KN motif and ankyrin repeat domains 1	protein-coding	3.72105667919337	3.90828443671943	3.42134369167738	3.4812302347736	3.40180665802683	3.80021006672077	2.26521566060317	2.69946844082355	-0.733608985643196	0.223568554273184	0.714791840691861
Merged-chr12-83929370-4	chr12	83929266	83929466	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7432.0	NR_073564	18222.0	Mm.4390	NM_010949	ENSMUSG00000021224	Numb	Nb	NUMB endocytic adaptor protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-44546413-4	chr11	44546330	44546530	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166553, intron 4 of 5)	intron (NM_001166553, intron 4 of 5)	27053.0	NM_001166553	74315.0	Mm.156771	NM_028862	ENSMUSG00000019189	Rnf145	3732413I11Rik|TMRF1	ring finger protein 145	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122133757-1	chr5	122133657	122133857	+	601.0	f1_c57bl6.idr	intron (NM_183307, intron 2 of 12)	intron (NM_183307, intron 2 of 12)	1136.0	NM_001289811	330188.0	Mm.386907	NM_183307	ENSMUSG00000043036	Ccdc63	4921511C16Rik	coiled-coil domain containing 63	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34914696-2	chr17	34914596	34914796	+	993.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001286573)	TTS (NM_001286573)	230.0	NM_023557	70129.0	Mm.183126	NM_023557	ENSMUSG00000007034	Slc44a4	2210409B01Rik|NG22|mTPPT1	solute carrier family 44, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-101151360-2	chr4	101151260	101151460	+	828.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_146145)	TTS (NM_146145)	82322.0	NM_183024	242570.0	Mm.185636	NM_183024	ENSMUSG00000035275	Raver2	A430091O22Rik	ribonucleoprotein, PTB-binding 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-27605867-3	chr3	27605765	27605965	+	615.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356953, intron 4 of 26)	intron (NM_001356953, intron 4 of 26)	-20870.0	NR_037275	100526525.0		NR_037275	ENSMUSG00000092695	Mir3092	mir-3092|mmu-mir-3092	microRNA 3092	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-143996936-2	chr1	143996836	143997036	+	940.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7213.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124047188-4	chr5	124047104	124047304	+	921.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-14944.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	3.30316777292266	4.22083158061028	3.31467118391034	3.87778467383878	3.54081091419653	3.64322524517849	3.00255938657747	3.49818584860185	-0.436581055430279	0.416760018362123	0.897222495742637
Merged-chr7-80773192-2	chr7	80773092	80773292	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016721, intron 2 of 37)	intron (NM_016721, intron 2 of 37)	30139.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-9656465-2	chr4	9656379	9656579	+	889.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290367, intron 1 of 22)	URR1A|DNA|hAT-Charlie	12683.0	NM_023066	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-45116781-1	chr2	45116681	45116881	+	1000.0	f0_c57.idr	intron (NM_001355288, intron 1 of 10)	intron (NM_001355288, intron 1 of 10)	661.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-103282458-3	chr4	103282356	103282556	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163494, intron 1 of 7)	RLTR22_Mur|LTR|ERVK	8407.0	NM_027612	70941.0	Mm.158501	NM_027612	ENSMUSG00000028520	4921539E11Rik	-	RIKEN cDNA 4921539E11 gene	protein-coding	-1.17496621253595	-1.15081052752249	-1.16154650704664	-1.17036536028253	-0.694716923764521	-1.1484839959734	-0.990190146178075	-1.16878678976971	2.59613346485179	0.426474599917637	1
Merged-chr10-95550639-2	chr10	95550539	95550739	+	593.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358996, intron 3 of 4)	intron (NM_001358996, intron 3 of 4)	8682.0	NR_037212	100526463.0		NR_037212	ENSMUSG00000092867	Mir3058	mir-3058|mmu-mir-3058	microRNA 3058	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91511591-2	chr16	91511477	91511677	+	655.125	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	15967.0	NR_105786	102465190.0		NR_105786	ENSMUSG00000099308	Mir6367	Gm27467|mmu-mir-6367	microRNA 6367	ncRNA	1.71639944764854	1.9292005112808	2.92627537477948	1.80972853234944	1.86880272923822	1.26090563654866	2.66707595604572	1.96650550475002	-0.377090063557941	0.705968398480314	0.998431161219273
Merged-chr2-73476918-2	chr2	73476818	73477018	+	615.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153138, intron 1 of 7)	B1_Mus1|SINE|Alu	8835.0	NM_001289723	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-115647950-1	chr12	115647850	115648050	+	548.0	f1_c57bl6.idr	Intergenic	Intergenic	47844.0	NR_105810	102465205.0		NR_105810	ENSMUSG00000098336	Mir6388	Gm27925|mmu-mir-6388	microRNA 6388	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-101292179-4	chr4	101292099	101292299	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-26917.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-116858520-6	chr3	116858422	116858622	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1045.0	NM_001113478	20321.0	Mm.66293	NM_009146	ENSMUSG00000033386	Frrs1	AI131732|Sdfr2	ferric-chelate reductase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6362319-2	chr19	6362219	6362419	+	955.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1371.0	NM_011750	22668.0	Mm.256422	NM_011750	ENSMUSG00000024949	Sf1	BBP|MZFM|WBP4|Zfp162	splicing factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35584547-2	chr17	35584447	35584647	+	844.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17062.0	NM_175148	69542.0	Mm.265291	NM_175148	ENSMUSG00000039269	2300002M23Rik	Stg|emprin	RIKEN cDNA 2300002M23 gene	protein-coding	2.32286908321724	1.37305424995027	1.93702771662829	2.08019478710883	1.56588209808474	1.13835898441462	1.83041197642376	1.48963008748043	-1.37362490816362	0.206555787756928	0.69444881603987
Merged-chr1-88589192-4	chr1	88589117	88589317	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(GA)n|Simple_repeat|Simple_repeat	37700.0	NR_037971	100503197.0	Mm.99352	NR_037971	ENSMUSG00000100798	Gm19589	-	predicted gene, 19589	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-51859671-3	chr11	51859563	51859763	+	901.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2033.0	NM_001357588	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41305766-2	chr19	41305628	41305828	+	873.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 9 of 16)	B1F1|SINE|Alu	-41724.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	-0.312130406069978	-0.298731014595647	-0.303123776416438	-0.142074943809589	-0.311294746680998	0.202683775403473	-0.302155171354727	0.329119441578573	2.82724177034014	0.248439261975473	1
Merged-chr1-64690189-3	chr1	64690083	64690283	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038009, intron 1 of 1)	intron (NR_038009, intron 1 of 1)	476.0	NR_038009	69941.0	Mm.69044	NR_038009	ENSMUSG00000087213	2810408I11Rik	-	RIKEN cDNA 2810408I11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-86226392-2	chr15	86226292	86226492	+	562.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145476, intron 1 of 12)	intron (NM_145476, intron 1 of 12)	11933.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-63291656-2	chr10	63291556	63291756	+	634.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030114, intron 15 of 25)	intron (NM_030114, intron 15 of 25)	47379.0	NM_019812	93759.0	Mm.351459	NM_019812	ENSMUSG00000020063	Sirt1	AA673258|SIR2L1|Sir2|Sir2a|Sir2alpha	sirtuin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46599693-3	chr19	46599590	46599790	+	922.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146099, intron 1 of 3)	intron (NM_146099, intron 1 of 3)	584.0	NM_146099	226178.0	Mm.329895	NM_146099	ENSMUSG00000047731	Wbp1l	D19Wsu162e|Opal1	WW domain binding protein 1 like	protein-coding	1.73431713748508	1.27786581947446	2.48486421439892	1.46236839365007	2.78425731096393	2.11901976369025	2.50506311754677	1.98238909578917	1.3442254050368	0.170549745887103	0.637908273569781
Merged-chr3-89394211-2	chr3	89394122	89394322	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NR_040404)	promoter-TSS (NR_040404)	-68.0	NR_040404	545539.0	Mm.393389	NR_040403	ENSMUSG00000074466	Gm15417	-	predicted gene 15417	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-38959557-2	chr6	38959457	38959657	+	591.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 3 of 12)	intron (NM_011539, intron 3 of 12)	40571.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-59339159-2	chr2	59339059	59339259	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_026361, exon 15 of 22)	exon (NM_026361, exon 15 of 22)	47523.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-45655190-2	chr14	45655090	45655290	+	798.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_176845, intron 1 of 12)	intron (NM_176845, intron 1 of 12)	2863.0	NR_039593	100628600.0		NR_039593	ENSMUSG00000093167	Mir5131	mmu-mir-5131|mu-mir-5131	microRNA 5131	ncRNA	0.896286418056962	0.473820213273316	0.467724912340613	1.12491398158305	0.706965020436323	0.475200886255662	0.469065084527294	1.13229396093836	-0.252692153898544	0.889026988025137	1
Merged-chr11-94391815-2	chr11	94391715	94391915	+	742.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029600, intron 1 of 30)	intron (NM_029600, intron 1 of 30)	1161.0	NM_029600	76408.0	Mm.23942	NM_029600	ENSMUSG00000020865	Abcc3	1700019L09Rik|ABC31|MLP2|MOAT-D|MRP3	ATP-binding cassette, sub-family C (CFTR/MRP), member 3	protein-coding	0.527622892531889	-0.24530598830167	-0.249951176020994	0.174883539853152	-0.110957284470496	-0.244258916104936	-0.248926626235376	-0.252909132287031	-2.9179407289302	0.22471501234627	1
Merged-chr16-92411583-2	chr16	92411492	92411692	+	692.166626	f0_balb.idr|f1_balb.idr	intron (NM_001081549, intron 1 of 3)	intron (NM_001081549, intron 1 of 3)	-11514.0	NM_019466	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	0.321479631936849	0.351160401173248	0.341574309604913	0.525919877008709	0.767486211538957	1.17544525648642	0.343699569615195	1.32657281647547	3.76856354725639	0.0396385572551463	1
Merged-chr3-153636644-4	chr3	153636555	153636755	+	864.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011372, intron 1 of 4)	intron (NM_011372, intron 1 of 4)	88478.0	NM_011372	20447.0	Mm.296453	NM_011372	ENSMUSG00000052544	St6galnac3	Siat7c	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133592798-2	chr4	133592687	133592887	+	669.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8414.0	NM_133884	100210.0	Mm.274001	NM_133884	ENSMUSG00000028848	Gpn2	AI838661|Atpbd1b|R74630	GPN-loop GTPase 2	protein-coding	3.74591654273607	3.98635447419232	4.40044150917627	3.9390350024587	4.16277530698832	2.85438446972683	3.044610407344	3.62832336399372	-0.703173021139455	0.181636808499573	0.655055855338705
Merged-chr9-61706167-1	chr9	61706067	61706267	+	1000.0	f0_balb.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	208343.0	NM_018853	56040.0	Mm.3158	NM_018853	ENSMUSG00000007892	Rplp1	2410042H16Rik|Arpp1|C430017H15Rik	ribosomal protein, large, P1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45872822-4	chr7	45872719	45872919	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133950)	promoter-TSS (NM_133950)	-21.0	NM_133950	68137.0	Mm.298433	NM_133950	ENSMUSG00000002778	Kdelr1	8030486F04Rik|AW215843|Erd2.1	KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-105186817-1	chr10	105186717	105186917	+	617.0	f0_balb.idr	TTS (NM_177368)	TTS (NM_177368)	387662.0	NM_177368	278279.0	Mm.25225	NM_177368	ENSMUSG00000036019	Tmtc2	8430438D04Rik|D330034A10Rik	transmembrane and tetratricopeptide repeat containing 2	protein-coding	-1.10384998116487	-1.07946603826229	-1.09181520747217	-1.09984628216847	-1.10325314425446	-1.07678992177872	-1.08901962624914	-0.315793331868817	3.00679100283758	0.36959816332642	1
Merged-chr17-55758535-2	chr17	55758435	55758635	+	646.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_139138, intron 1 of 16)	L1_Mus2|LINE|L1	8551.0	NM_139138	52614.0	Mm.210497	NM_139138	ENSMUSG00000032915	Adgre4	D17Ertd479e|Egf-tm7|Emr4|Fire|Gpr127	adhesion G protein-coupled receptor E4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-86181518-2	chr15	86181418	86181618	+	901.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145475, intron 1 of 12)	intron (NM_145475, intron 1 of 12)	-4210.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-55258042-2	chr9	55257942	55258142	+	940.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_032002, intron 3 of 7)	PB1D10|SINE|Alu	25583.0	NM_032002	83961.0	Mm.443874	NM_032002	ENSMUSG00000032311	Nrg4	AI552600	neuregulin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-51247586-1	chr14	51247486	51247686	+	604.666687	f0_balb.idr	Intergenic	Intergenic	8526.0	NM_053113	93726.0	Mm.153688	NM_053113	ENSMUSG00000047222	Rnase2a	Ear11	ribonuclease, RNase A family, 2A (liver, eosinophil-derived neurotoxin)	protein-coding	1.08252094874213	1.2188856178267	0.998530172400698	0.772565321278261	0.755999850233352	1.7640310792249	1.69364456800011	1.53054970855727	1.90172915864259	0.165592921973716	0.630867977894012
Merged-chr3-88592895-4	chr3	88592832	88593032	+	960.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13324.0	NM_025448	66256.0	Mm.7091	NM_025448	ENSMUSG00000041355	Ssr2	1500032E05Rik|AI315033|AU020133|SSR-beta|TLAP|TRAPB|TRAPbeta	signal sequence receptor, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-4364229-3	chr18	4364090	4364290	+	776.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040328, intron 2 of 3)	intron (NR_040328, intron 2 of 3)	10643.0	NR_040328	73915.0	Mm.482777	NR_040328		4833419F23Rik	-	RIKEN cDNA 4833419F23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-37761129-2	chr3	37761029	37761229	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36769.0	NM_198657	381438.0	Mm.490549	NM_198657	ENSMUSG00000058174	Gm5148	EG381438	predicted gene 5148	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-22603164-1	chr4	22603064	22603264	+	540.0	f1_c57bl6.idr	Intergenic	Intergenic	112616.0	NR_131335	105500046.0		NR_131335	ENSMUSG00000107859	Gm30731	Pnky|lnc-pou3f2	predicted gene, 30731	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-40931308-4	chr14	40931197	40931397	+	979.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145928, intron 2 of 8)	intron (NM_145928, intron 2 of 8)	16912.0	NM_001316748	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27954797-3	chr17	27954711	27954911	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181413, intron 1 of 24)	intron (NM_181413, intron 1 of 24)	45505.0	NM_181413	224650.0	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-140954867-4	chr7	140954760	140954960	+	986.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_030694)	TTS (NM_030694)	1101.0	NM_030694	80876.0	Mm.379266	NM_030694	ENSMUSG00000060591	Ifitm2	DSPA2c|Ifitm3l|fragilis3|mil-3	interferon induced transmembrane protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-79007226-1	chr12	79007126	79007326	+	982.0	f0_balb.idr	promoter-TSS (NM_178745)	promoter-TSS (NM_178745)	51.0	NM_178745	268567.0	Mm.341747	NM_178745	ENSMUSG00000046157	Tmem229b	6330442E10Rik|9830138K24|AU019070	transmembrane protein 229B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-55446788-4	chr11	55446701	55446901	+	882.525024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009720, intron 3 of 3)	intron (NM_009720, intron 3 of 3)	14407.0	NM_009720	11927.0	Mm.217759	NM_009720	ENSMUSG00000018585	Atox1	AI256639|Atx1	antioxidant 1 copper chaperone	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-95693046-2	chr9	95692946	95693146	+	679.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_029620, intron 7 of 8)	intron (NM_029620, intron 7 of 8)	55418.0	NM_029620	76477.0	Mm.46016	NM_029620	ENSMUSG00000015354	Pcolce2	2400001O18Rik|Pcpe2	procollagen C-endopeptidase enhancer 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-23824990-2	chr17	23824890	23825090	+	803.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_175229)	TTS (NM_175229)	1699.0	NR_039586	100628593.0		NR_039586	ENSMUSG00000092981	Mir5125	mmu-mir-5125|mu-mir-5125	microRNA 5125	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-27667160-4	chr15	27667046	27667246	+	732.625	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198301, intron 1 of 6)	intron (NM_198301, intron 1 of 6)	14396.0	NM_001242424	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-32320819-4	chr17	32320698	32320898	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_017476)	TTS (NM_017476)	440.0	NM_001357760	56399.0	Mm.328945	NM_019774	ENSMUSG00000024045	Akap8	1200016A02Rik|AA673585|AKAP-8|AKAP95|AU015639	A kinase (PRKA) anchor protein 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94476367-3	chr10	94476197	94476397	+	723.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 2 of 4)	intron (NM_001359762, intron 2 of 4)	-38560.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-192081224-3	chr1	192081120	192081320	+	919.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011633, intron 1 of 9)	intron (NM_011633, intron 1 of 9)	11379.0	NM_011633	22033.0	Mm.380491	NM_011633		Traf5	-	TNF receptor-associated factor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131661857-2	chr1	131661757	131661957	+	652.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007799, intron 1 of 9)	intron (NM_007799, intron 1 of 9)	23543.0	NM_007799	13034.0	Mm.230249	NM_007799	ENSMUSG00000004552	Ctse	A430072O03Rik|C920004C08Rik|CE|CatE	cathepsin E	protein-coding	-0.291782866857225	-0.631882839800181	-0.634880164825976	-0.484132996311272	-0.191152556393765	-0.631204753495639	-0.634220610436056	-0.63677940828184	-0.0183167330814654	0.994662394866585	1
Merged-chr13-58552161-4	chr13	58552058	58552258	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58719.0	NM_022317	114304.0	Mm.18188	NM_022317	ENSMUSG00000021553	Slc28a3	Cnt3	solute carrier family 28 (sodium-coupled nucleoside transporter), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-78015631-4	chr10	78015543	78015743	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5836.0	NM_001358793	18641.0	Mm.269649	NM_008826	ENSMUSG00000020277	Pfkl	AA407869|ATP-PFK|PFK-B|PFK-L	phosphofructokinase, liver, B-type	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-88641147-4	chr4	88641051	88641251	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3308.0	NM_177347	230396.0	Mm.246592	NM_177347	ENSMUSG00000063376	Ifna13	-	interferon alpha 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-46393444-2	chr7	46393344	46393544	+	820.875	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3024.0	NM_008421	16502.0	Mm.249386	NM_008421	ENSMUSG00000058975	Kcnc1	C230009H10Rik|KShIIIB|KV4|Kcr2-1|Kv3.1|NGK2|Shaw	potassium voltage gated channel, Shaw-related subfamily, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-4117497-2	chr11	4117397	4117597	+	936.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144520, intron 1 of 11)	intron (NM_144520, intron 1 of 11)	1232.0	NM_144520	67815.0	Mm.253922	NM_144520	ENSMUSG00000003585	Sec14l2	1300013M05Rik|Spf|TAP	SEC14-like lipid binding 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-101281-1	chr1	101181	101381	+	1000.0	f1_c57bl6.idr	Intergenic	Intergenic	3570217.0	NM_001011874	497097.0	Mm.454496	NM_001011874	ENSMUSG00000051951	Xkr4	AY534250|Gm210|XRG4|mKIAA1889	X-linked Kx blood group related 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-74734634-2	chr14	74734534	74734734	+	903.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285423, intron 1 of 8)	intron (NM_001285423, intron 1 of 8)	2337.0	NM_016903	13885.0	Mm.38055	NM_016903	ENSMUSG00000021996	Esd	Es-10|Es10|FGH|sid478	esterase D/formylglutathione hydrolase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-108507963-4	chr9	108507880	108508080	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133794)	promoter-TSS (NM_133794)	-25.0	NM_133794	97541.0	Mm.272427	NM_133794	ENSMUSG00000032604	Qars	1110018N24Rik|1200016L19Rik|C80286|GLNRS	glutaminyl-tRNA synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-48870420-2	chr11	48870320	48870520	+	620.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008326, intron 1 of 2)	intron (NM_008326, intron 1 of 2)	1000.0	NM_001355757	15944.0	Mm.29938	NM_008326	ENSMUSG00000046879	Irgm1	Ifggd3|Ifi1|Iigp3|Iipg3|Irgm	immunity-related GTPase family M member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-4382478-2	chr11	4382378	4382578	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029458, intron 10 of 10)	intron (NM_029458, intron 10 of 10)	58604.0	NM_029458	75828.0	Mm.159592	NM_029458	ENSMUSG00000020419	Hormad2	4930529M09Rik	HORMA domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-68384027-2	chr15	68383927	68384127	+	585.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-42738.0	NR_029718	387228.0		NR_029718	ENSMUSG00000065437	Mir30d	Mirn30d|mir-30d|mmu-mir-30d	microRNA 30d	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-29718704-4	chr11	29718575	29718775	+	908.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_024226, exon 1 of 7)	5' UTR (NM_024226, exon 1 of 7)	112.0	NM_024226	68585.0	Mm.192580	NM_024226	ENSMUSG00000020458	Rtn4	1110020G17Rik|AA407876|AA409940|AA960376|ASY|C130026I10Rik|NOGO|NSP-CL|NgA|Nogo-A|Nogo-B|Nogo-C|mKIAA0886|mKIAA4153	reticulon 4	protein-coding	4.81604435421256	4.89482886834396	4.07563841521269	5.25152195066437	4.18234256218185	3.28471131465718	3.41021452508564	4.3830175615274	-1.17159706917885	0.00899119715012329	0.10097038890198
Merged-chr15-99723940-4	chr15	99723846	99724046	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010271, exon 8 of 8)	3' UTR (NM_010271, exon 8 of 8)	528.0	NR_155353	102638434.0	Mm.364438	NR_155353		Gm16537	-	predicted gene 16537	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-41487191-3	chr12	41487076	41487276	+	925.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053122, intron 4 of 6)	intron (NM_053122, intron 4 of 6)	-1119.0	NM_010733	16981.0	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-60516434-4	chr3	60516338	60516538	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253711, intron 1 of 7)	intron (NM_001253711, intron 1 of 7)	15259.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-83934460-4	chr18	83934347	83934547	+	665.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	152115.0	NM_001081300	110796.0	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-100834597-2	chr6	100834497	100834697	+	780.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_182939, intron 1 of 8)	PB1D9|SINE|Alu	959.0	NM_182939	232314.0	Mm.27223	NM_182939	ENSMUSG00000052144	Ppp4r2	BE691708|C230060M08Rik	protein phosphatase 4, regulatory subunit 2	protein-coding	1.1848417596136	0.694256651549025	0.68327397685423	1.14397783680303	1.08831359357923	1.3727761383238	0.685705515372615	1.5530921165142	1.18330707482221	0.432932093985254	0.905249087423332
Merged-chr19-12800754-2	chr19	12800625	12800825	+	730.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_134152, intron 1 of 8)	B1_Mur1|SINE|Alu	2146.0	NM_134152	107321.0	Mm.313136	NM_134152	ENSMUSG00000024696	Lpxn	4933402K05Rik|A530083L21Rik|AV278559|LDPL	leupaxin	protein-coding	0.426331169331084	0.802995503782057	2.30180735615607	0.458088847109266	0.431199826109715	0.81186678252593	2.1883001464195	0.461305073205287	-0.163873543178049	0.951481206558477	0.998431161219273
Merged-chr5-122779740-4	chr5	122779635	122779835	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145358)	promoter-TSS (NM_145358)	-325.0	NM_145358	207565.0	Mm.289237	NM_145358	ENSMUSG00000029471	Camkk2	6330570N16Rik|AW061083|mKIAA0787	calcium/calmodulin-dependent protein kinase kinase 2, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-41765893-4	chr15	41765745	41765945	+	909.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152565, intron 3 of 17)	L1MA4|LINE|L1	-23150.0	NM_001358976	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-37355681-3	chr6	37355627	37355827	+	825.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_178661, exon 6 of 12)	exon (NM_178661, exon 6 of 12)	-55751.0	NM_001347104	320127.0	Mm.119469	NM_001081206	ENSMUSG00000038665	Dgki	6430604M11Rik|C130010K08Rik	diacylglycerol kinase, iota	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-16302897-4	chr16	16302814	16303014	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_038046)	promoter-TSS (NR_038046)	-51.0	NR_038046	70120.0	Mm.37486	NM_198246	ENSMUSG00000022792	Yars2	2210023C10Rik|tyrRS	tyrosyl-tRNA synthetase 2 (mitochondrial)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-6386705-4	chr15	6386603	6386803	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023118)	promoter-TSS (NM_023118)	-45.0	NM_023118	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5622730-2	chr17	5622630	5622830	+	830.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	130130.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6291324-4	chr19	6291254	6291454	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010119, intron 2 of 4)	intron (NM_010119, intron 2 of 4)	14458.0	NM_010119	13660.0	Mm.30169	NM_010119	ENSMUSG00000024772	Ehd1	AA409636|Past1|RME-1	EH-domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-20969177-4	chr5	20969081	20969281	+	960.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17359.0	NM_001080977	242860.0	Mm.254286	NM_001080977	ENSMUSG00000039968	Rsbn1l	8430412F05Rik|AI447441|C330002G24Rik	round spermatid basic protein 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-25411761-2	chr15	25411661	25411861	+	732.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_027395, intron 1 of 1)	intron (NM_027395, intron 1 of 1)	2003.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166484530-2	chr2	166484430	166484630	+	617.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C|LTR|ERVK	37079.0	NR_015558	319684.0	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-77446819-4	chr11	77446749	77446949	+	945.1083369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177710, intron 13 of 14)	intron (NM_177710, intron 13 of 14)	-17064.0	NM_139129	216961.0	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-59889913-3	chr13	59889842	59890042	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66795.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	1.54501347586663	1.36356042494846	2.38389030148205	1.87200342720213	1.88786528343293	1.12672957219678	1.82148291946522	1.63242896318597	-0.607659818720132	0.579560710771889	0.965985075107763
Merged-chr11-85686391-4	chr11	85686317	85686517	+	813.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138681, intron 24 of 25)	ORR1E|LTR|ERVL-MaLR	33327.0	NR_045875	71489.0	Mm.442482	NR_045875	ENSMUSG00000086199	Bcas3os1	8430403D17Rik	breast carcinoma amplified sequence 3, opposite strand 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-38610859-2	chr12	38610759	38610959	+	643.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178681, intron 24 of 24)	Lx5|LINE|L1	3662.0	NR_045943	73867.0	Mm.78933	NR_045943	ENSMUSG00000112967	4930428E07Rik	-	RIKEN cDNA 4930428E07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120887349-3	chr11	120887244	120887444	+	644.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027745, intron 10 of 18)	intron (NM_027745, intron 10 of 18)	45528.0	NM_027745	71276.0	Mm.275751	NM_027745	ENSMUSG00000048445	Ccdc57	4933434G05Rik	coiled-coil domain containing 57	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-79956186-2	chr11	79956086	79956286	+	567.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144826, intron 6 of 18)	intron (NM_144826, intron 6 of 18)	6201.0	NM_144826	216987.0	Mm.274961	NM_144826	ENSMUSG00000035575	Utp6	4732497O03Rik|HCA66	UTP6 small subunit processome component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91204092-2	chr2	91203992	91204192	+	791.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357067, intron 2 of 10)	B1_Mur3|SINE|Alu	1180.0	NM_007387	11432.0	Mm.45570	NM_007387	ENSMUSG00000002103	Acp2	Acp-2|LAP	acid phosphatase 2, lysosomal	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-80115473-8	chr12	80115428	80115628	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2515.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	2.25315138545465	1.32575267084307	1.54850800455091	2.64373572626911	2.27246100926938	1.83021409983447	2.96298884720362	2.28565376278921	0.77064313577324	0.424731800289219	0.901293602726532
Merged-chr3-107274037-4	chr3	107273938	107274138	+	932.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4820.0	NM_026774	68576.0	Mm.290035	NM_026774	ENSMUSG00000087260	Lamtor5	1110003H18Rik|Hbxip|XIP	late endosomal/lysosomal adaptor, MAPK and MTOR activator 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-105748547-2	chr5	105748455	105748655	+	674.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001122768, intron 2 of 2)	B1_Mur4|SINE|Alu	47745.0	NM_178701	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	2.16105517823429	1.32379924828973	2.45989985779588	1.26224583661617	2.74532475373751	2.56838736847321	1.955290311293	2.74657944951744	1.43391113176881	0.141853954104101	0.587744950932814
Merged-chr12-84173618-2	chr12	84173518	84173718	+	997.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001163502, exon 2 of 13)	exon (NM_001163502, exon 2 of 13)	20397.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30234654-1	chr7	30234554	30234754	+	1000.0	f1_balb.idr	intron (NM_001289817, intron 2 of 3)	intron (NM_001289817, intron 2 of 3)	2111.0	NM_001289817	381867.0	Mm.483986	NM_001289817	ENSMUSG00000100512	Ovol3	Gm1903|movo3	ovo like zinc finger 3	protein-coding	-1.18818405238703	-1.1621273909064	-1.17340543805306	-1.18266956177369	-0.508992984534732	-1.15968339104222	-1.17085233538681	-1.18101128805699	2.76775479490304	0.421927342186551	1
Merged-chr15-73487360-2	chr15	73487260	73487460	+	558.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25200.0	NR_152151	105841.0	Mm.322557	NM_001081066	ENSMUSG00000036661	Dennd3	AI447457|E030003N15Rik	DENN/MADD domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-75524680-2	chr1	75524580	75524780	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027886, intron 2 of 24)	intron (NM_027886, intron 2 of 24)	3151.0	NM_027886	71728.0	Mm.312650	NM_027886	ENSMUSG00000026213	Stk11ip	1200014D22Rik|BB131189|LIP1|LKB1IP	serine/threonine kinase 11 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-85381427-2	chr6	85381327	85381527	+	722.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6793.0	NM_001003955	52055.0	Mm.220334	NM_177466	ENSMUSG00000051343	Rab11fip5	9130206P09Rik|C75969|D6Ertd32e|GAF1|RIP11	RAB11 family interacting protein 5 (class I)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-29806904-2	chr11	29806804	29807004	+	953.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146016, intron 17 of 41)	Lx8|LINE|L1	18764.0	NM_176829	216622.0	Mm.443260	NM_176829	ENSMUSG00000078157	4931440F15Rik	Fem1ab	RIKEN cDNA 4931440F15 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67004283-4	chr10	67004185	67004385	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_110511)	promoter-TSS (NR_110511)	-790.0	NR_110511	102634101.0	Mm.445258	NR_110511	ENSMUSG00000112925	Gm31763	-	predicted gene, 31763	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-84791496-2	chr17	84791396	84791596	+	893.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028233)	promoter-TSS (NM_028233)	-710.0	NM_028233	72416.0	Mm.217027	NM_028233	ENSMUSG00000024120	Lrpprc	3110001K13Rik|C76645|Gp130|Lrp130|Lsfc	leucine-rich PPR-motif containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-4082976-4	chr7	4082880	4083080	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033568, intron 6 of 8)	intron (NR_033568, intron 6 of 8)	-19776.0	NM_001302676	52855.0	Mm.290880	NM_178611	ENSMUSG00000055541	Lair1	5133400O11Rik|BB115266|D7Bwg0421e|Lair-1	leukocyte-associated Ig-like receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70613969-4	chr8	70613843	70614043	+	764.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2901.0	NM_153074	211228.0	Mm.132939	NM_153074	ENSMUSG00000049988	Lrrc25	Mapa	leucine rich repeat containing 25	protein-coding	2.07976023641558	0.94841049781488	0.930260035223755	1.69875870192634	1.8869804687321	1.70996923882471	0.934304206924304	1.46045482157282	0.0662497994307671	0.9604021647708	0.998431161219273
Merged-chr4-143162236-4	chr4	143162125	143162325	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001256380, intron 5 of 7)	CpG-10608	-26063.0	NR_105988	102465618.0		NR_105988	ENSMUSG00000106597	Mir7021	mmu-mir-7021	microRNA 7021	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-79753202-4	chr15	79753092	79753292	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045069, exon 4 of 4)	non-coding (NR_045069, exon 4 of 4)	10494.0	NR_045069	100504191.0	Mm.421420	NR_045069	ENSMUSG00000087543	Gm16576	-	predicted gene 16576	ncRNA	4.14800614714283	4.45812630976053	3.49919950153031	4.76884703012208	4.18065052958579	4.37148380816219	3.96547596930984	4.79019318090274	0.0862349296971082	0.844911038875687	0.998431161219273
Merged-chr15-93275354-4	chr15	93275231	93275431	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346785)	promoter-TSS (NM_001346785)	-152.0	NM_001346785	223827.0	Mm.22819	NM_001033275	ENSMUSG00000036197	Gxylt1	Glt8d3|Gm1228|Gm87	glucoside xylosyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-41194149-2	chr4	41194049	41194249	+	990.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_026275)	TTS (NM_026275)	58128.0	NM_026275	67615.0	Mm.389540	NM_026275	ENSMUSG00000036241	Ube2r2	1200003M11Rik|Cdc34b|Ubc3b	ubiquitin-conjugating enzyme E2R 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-58137159-2	chr15	58137059	58137259	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-2077.0	NM_027435	70472.0	Mm.221758	NM_027435	ENSMUSG00000022360	Atad2	2610509G12Rik	ATPase family, AAA domain containing 2	protein-coding	-1.58994551673671	-1.55912852307891	-1.56844783632235	-1.57610299769523	-1.18549093183599	-1.55710898902261	-1.56633814807757	-1.57473272746952	1.78703309985663	0.610309988231842	1
Merged-chr3-129422005-4	chr3	129421865	129422065	+	937.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11708.0	NR_033594	435755.0	Mm.430561	NR_033594	ENSMUSG00000105712	Pou5f1-rs4	EG435755|Gm5712|Oct4P1|Otf3-rs4|Otf3d	POU domain, class 5, transcription factor 1, related sequence 4	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-88266557-3	chr1	88266462	88266662	+	833.888855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_198652, exon 8 of 8)	exon (NM_198652, exon 8 of 8)	2846.0	NR_040291	78605.0	Mm.384762	NR_040291		6430706D22Rik	-	RIKEN cDNA 6430706D22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-61469055-3	chr10	61468952	61469152	+	675.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6781.0	NM_153542	216011.0	Mm.136116	NM_153542	ENSMUSG00000037151	Lrrc20	BC036304	leucine rich repeat containing 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-32586144-3	chr11	32586051	32586251	+	952.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 4 of 18)	intron (NM_009288, intron 4 of 18)	52885.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-8653668-3	chr8	8653587	8653787	+	894.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010111, intron 1 of 4)	intron (NM_010111, intron 1 of 4)	7086.0	NM_010111	13642.0	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115000277-4	chr11	115000142	115000342	+	977.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134158, intron 2 of 3)	intron (NM_134158, intron 2 of 3)	1638.0	NM_134158	140497.0	Mm.2699	NM_134158	ENSMUSG00000044811	Cd300c2	CLM4|Cd300c|Cd300d|DIgR1|Igsf7|Lmir2|MAIR-II	CD300C molecule 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167501373-2	chr2	167501273	167501473	+	749.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030743, intron 2 of 7)	intron (NM_030743, intron 2 of 7)	-2070.0	NR_153838	81018.0	Mm.22225	NM_030743	ENSMUSG00000006418	Rnf114	1110008J21Rik|AI225886|AW549494|Zfp228|Zfp313|Znf228	ring finger protein 114	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-31080344-1	chr16	31080244	31080444	+	551.0	f1_balb.idr	intron (NM_198626, intron 1 of 3)	intron (NM_198626, intron 1 of 3)	1088.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	0.207121911198302	0.435464879395413	0.222367240860458	1.05788585740164	0.366109183935599	0.888174976281364	0.223993563994471	0.396142332499969	-0.260240193104779	0.887908285681875	1
Merged-chr12-80235474-3	chr12	80235378	80235578	+	850.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134156, intron 1 of 20)	intron (NM_134156, intron 1 of 20)	24893.0	NM_134156	109711.0	Mm.253564	NM_134156	ENSMUSG00000015143	Actn1	3110023F10Rik|Actn1a	actinin, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-58180743-2	chr19	58180643	58180843	+	565.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-115461.0	NR_040449	791347.0	Mm.452208	NR_040449		Gm10007	-	predicted gene 10007	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-114694651-2	chr9	114694559	114694759	+	887.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_146229, intron 2 of 12)	intron (NM_146229, intron 2 of 12)	5828.0	NM_146229	235661.0	Mm.128627	NM_146229	ENSMUSG00000032435	Dync1li1	1110053F02Rik|Dnclic1|LIC-1	dynein cytoplasmic 1 light intermediate chain 1	protein-coding	-0.469527934110791	-0.453642214397386	-0.458804613332432	0.571579435948339	-0.159747386683974	-0.45248400782159	-0.457662568605767	-0.462112779582759	-2.19440074621355	0.407909391464488	1
Merged-chr11-27340348-2	chr11	27340248	27340448	+	901.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A3-int|LTR|ERVL-MaLR	555240.0	NR_002890	654472.0	Mm.347777	NR_002890		Gm12070	-	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-145250488-1	chr7	145250388	145250588	+	1000.0	f1_balb.idr	intron (NR_132644, intron 24 of 24)	intron (NR_132644, intron 24 of 24)	33523.0	NR_132644	233979.0	Mm.102235	NM_146206	ENSMUSG00000048677	Tpcn2	D830047E22Rik|Gm35086	two pore segment channel 2	protein-coding	-0.6128350559759	-0.414285972360433	-0.606029908416687	-0.608593932467456	-0.348581503652823	-0.601943417100147	-0.0414862730099315	-0.608146501807854	2.31984907779324	0.383923487193764	1
Merged-chr4-46546001-2	chr4	46545901	46546101	+	939.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164804, intron 5 of 11)	B2_Mm2|SINE|B2	-9860.0	NM_029077	74735.0	Mm.240252	NM_029077	ENSMUSG00000039853	Trim14	5830400N10Rik|pub	tripartite motif-containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-13372150-4	chr16	13372075	13372275	+	991.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153588, intron 1 of 14)	intron (NM_153588, intron 1 of 14)	13754.0	NM_153588	239719.0	Mm.270643	NM_153588	ENSMUSG00000009569	Mkl2	Gt4-1|MRTF-B|Mrtfb|mKIAA1243	MKL/myocardin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25129707-4	chr7	25129624	25129824	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163556, intron 1 of 13)	intron (NM_001163556, intron 1 of 13)	2736.0	NM_011138	18987.0	Mm.76683	NM_011138	ENSMUSG00000008496	Pou2f2	Oct-2|Oct2a|Oct2b|Oct2c|Oct2d|Otf-2|Otf2	POU domain, class 2, transcription factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-5532901-1	chr6	5532801	5533001	+	574.0	f0_balb.idr	Intergenic	Intergenic	-36623.0	NM_013743	27273.0	Mm.235547	NM_013743	ENSMUSG00000019577	Pdk4	AV005916	pyruvate dehydrogenase kinase, isoenzyme 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-127894143-4	chr3	127894053	127894253	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027482, intron 1 of 1)	intron (NM_027482, intron 1 of 1)	2170.0	NM_027482	70617.0	Mm.317049	NM_027482	ENSMUSG00000050549	Fam241a	2700063A17Rik|5730508B09Rik|C80506	family with sequence similarity 241, member A	protein-coding	4.45213456765006	5.57637729097534	4.08866825239232	4.44535746934975	4.60566598804342	4.79639664543863	4.78740918910119	4.89033948349536	0.0149247593085625	0.970181701089279	0.998431161219273
Merged-chr9-45417451-4	chr9	45417344	45417544	+	988.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040732, intron 4 of 4)	intron (NR_040732, intron 4 of 4)	11367.0	NM_007503	11936.0	Mm.22742	NM_007503	ENSMUSG00000059412	Fxyd2	Atp1g1	FXYD domain-containing ion transport regulator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-82674449-2	chr17	82674349	82674549	+	667.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	403776.0	NR_045094	100503434.0	Mm.187281	NR_045094		Gm19689	-	predicted gene, 19689	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100893624-4	chr11	100893512	100893712	+	977.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_213660, intron 20 of 23)	intron (NM_213660, intron 20 of 23)	33128.0	NM_001164062	20850.0	Mm.277403	NM_011488	ENSMUSG00000004043	Stat5a	AA959963|STAT5	signal transducer and activator of transcription 5A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117805781-2	chr10	117805695	117805895	+	877.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13090.0	NM_134010	103468.0	Mm.12568	NM_134010	ENSMUSG00000052798	Nup107	AW541137|C76801	nucleoporin 107	protein-coding	0.24190765315424	0.602616985537233	0.283193792814219	0.268152233182966	1.13146066102221	2.32740338860098	0.573710926963765	0.270819314841048	4.35966691947019	0.0102785585858747	0.111034345060016
Merged-chr6-124790274-3	chr6	124790176	124790376	+	794.383362	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR12BD_Mm|LTR|ERVK	-10549.0	NM_001302555	16977.0	Mm.3207	NM_013588	ENSMUSG00000030125	Lrrc23	4921537K05Rik|B7|Lrpb7	leucine rich repeat containing 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85914554-3	chr12	85914464	85914664	+	934.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347395, intron 19 of 32)	intron (NM_001347395, intron 19 of 32)	89614.0	NM_001081423	320244.0	Mm.132172	NM_177114	ENSMUSG00000012609	Ttll5	1700048H13Rik|2310009M18Rik|4930556H18Rik|AI428864|D630041K24Rik|R75373|Stamp|mKIAA0998	tubulin tyrosine ligase-like family, member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-162547211-4	chr1	162547128	162547328	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144877, intron 1 of 7)	intron (NM_144877, intron 1 of 7)	1117.0	NM_144877	71449.0	Mm.270569	NM_144877	ENSMUSG00000026694	Mettl13	5630401D24Rik	methyltransferase like 13	protein-coding	2.00771015814733	1.96530408340933	1.52854720408179	1.49289326488384	2.61285900740651	2.77832704151517	2.19604065300822	2.00099810998375	1.70305927357221	0.0655950888456489	0.383379411824601
Merged-chr1-172463528-4	chr1	172463427	172463627	+	961.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11833.0	NM_029612	98365.0	Mm.150050	NM_029612	ENSMUSG00000026548	Slamf9	2310026I04Rik|AI462096|CD2F-10|CD84-H1|Cd2f10|SF2001	SLAM family member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-103809474-4	chr3	103809365	103809565	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163552)	promoter-TSS (NM_001163552)	-52.0	NM_001163552	67489.0	Mm.197568	NM_026193	ENSMUSG00000032952	Ap4b1	1810038H16Rik|AV004952|Ap4b4	adaptor-related protein complex AP-4, beta 1	protein-coding	3.46044823214345	3.49538725848709	2.99895790822903	3.57410324075752	2.98184968860205	3.43303161533179	3.322138087669	2.6846170455262	-0.446229137282641	0.445126874040721	0.91264757987019
Merged-chr2-129637324-2	chr2	129637224	129637424	+	591.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	41862.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	-2.18308165884198	-2.15547475440471	-2.16382331017202	-2.1706810624505	-2.18114370519566	-2.15366558754311	-2.03057248461154	-2.16945352807143	0.759018020146679	0.829933115115583	1
Merged-chr2-3657018-4	chr2	3656922	3657122	+	898.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-56436.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-78169844-4	chr10	78169730	78169930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138601)	promoter-TSS (NM_138601)	-62.0	NM_138601	28295.0	Mm.268691	NM_138601	ENSMUSG00000053329	D10Jhu81e	C21orf33|ES1	DNA segment, Chr 10, Johns Hopkins University 81 expressed	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-24780419-4	chr5	24780326	24780526	+	905.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22583.0	NM_153076	214301.0	Mm.63484	NM_153076	ENSMUSG00000038135	Crygn	-	crystallin, gamma N	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-120832013-4	chr14	120831904	120832104	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-79190.0	NM_023579	70572.0	Mm.221452	NM_023579	ENSMUSG00000030662	Ipo5	1110011C18Rik|5730478E03Rik|AA409333|C76941|IMB3|Kpnb3|Ranbp5|imp5	importin 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-112849541-2	chr12	112849441	112849641	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11375.0	NM_019925	56696.0	Mm.20455	NM_019925	ENSMUSG00000021298	Gpr132	G2a	G protein-coupled receptor 132	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127600401-4	chr10	127600295	127600495	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 6 of 88)	intron (NM_008512, intron 6 of 88)	20753.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-75308098-2	chr12	75307998	75308198	+	552.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023275)	promoter-TSS (NM_023275)	-215.0	NM_023275	80837.0	Mm.27467	NM_023275	ENSMUSG00000046768	Rhoj	1110005O19Rik|AW210585|Arhj|TC10L|TCL	ras homolog family member J	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-56163046-4	chr13	56162946	56163146	+	927.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15839.0	NM_145976	212937.0	Mm.116697	NM_145976	ENSMUSG00000049625	Tifab	-	TRAF-interacting protein with forkhead-associated domain, family member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5704280-2	chr19	5704180	5704380	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010609)	promoter-TSS (NM_010609)	-191.0	NM_010609	16530.0	Mm.440033	NM_010609	ENSMUSG00000024936	Kcnk7	2310014G03Rik|Kcnk6|Kcnk8|Knot|Mlk3	potassium channel, subfamily K, member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-49397930-3	chr7	49397837	49398037	+	732.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175272, intron 3 of 37)	intron (NM_175272, intron 3 of 37)	151748.0	NM_175272	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24850414-4	chr17	24850289	24850489	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024284)	promoter-TSS (NM_024284)	-87.0	NM_023480	68636.0	Mm.347964	NM_023480	ENSMUSG00000045316	Fahd1	1110025H10Rik|AV002085	fumarylacetoacetate hydrolase domain containing 1	protein-coding	6.40748259784348	6.08026944136975	6.35441633048212	5.86088604203658	6.80183706550022	6.54454782214735	6.79164873701332	6.48099672307058	0.504158537631606	0.016541579381395	0.155537515217851
Merged-chr5-30233166-2	chr5	30233066	30233266	+	583.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027652, intron 1 of 9)	intron (NM_027652, intron 1 of 9)	585.0	NR_137634	28042.0	Mm.168854	NM_027652	ENSMUSG00000075703	Selenoi	4933402G07Rik|AI448296|AI452230|C79563|D5Wsu178e|Ept1|SELI|mKIAA1724	selenoprotein I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-80740738-2	chr8	80740638	80740838	+	617.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1279.0	NM_053124	93762.0	Mm.246803	NM_053124	ENSMUSG00000031715	Smarca5	4933427E24Rik|D030040M08Rik|D330027N15Rik|MommeD4|Snf2h	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-107045617-2	chr4	107045517	107045717	+	557.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355532, intron 11 of 14)	intron (NM_001355532, intron 11 of 14)	21249.0	NM_025500	56280.0	Mm.29517	NM_025500	ENSMUSG00000028622	Mrpl37	2300004O14Rik|AI132596|MRP-L2|Rpml2	mitochondrial ribosomal protein L37	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-143567858-2	chr3	143567758	143567958	+	775.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	144285.0	NR_040405	621809.0	Mm.360134	NR_040405	ENSMUSG00000105279	Gm6260	EG621809	predicted gene 6260	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-11533592-4	chr19	11533479	11533679	+	985.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3270.0	NM_025658	66607.0	Mm.441056	NM_025658	ENSMUSG00000024678	Ms4a4d	2210417J23Rik	membrane-spanning 4-domains, subfamily A, member 4D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-107269792-4	chr8	107269684	107269884	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_039557, intron 2 of 3).3	intron (NR_039557, intron 2 of 3).3	13620.0	NR_039557	100628577.0		NR_039557	ENSMUSG00000093061	Mir5098	mmu-mir-5098|mu-mir-5098	microRNA 5098	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132500564-2	chr4	132500464	132500664	+	769.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_144907, intron 2 of 9)	B1_Mur3|SINE|Alu	9892.0	NM_144907	230784.0	Mm.23608	NM_144907	ENSMUSG00000028893	Sesn2	HI95|SEST2|Ses2	sestrin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-130276862-1	chr2	130276762	130276962	+	686.0	f1_balb.idr	intron (NR_149733, intron 7 of 12)	intron (NR_149733, intron 7 of 12)	-1164.0	NR_028528	100217428.0		NR_028528	ENSMUSG00000065272	Snord57	MBII-434	small nucleolar RNA, C/D box 57	snoRNA	1.21715333818807	0.938526955577745	1.81358802492393	1.65657870264884	1.22627392462913	0.942091696317175	1.82952040257477	1.66593039421977	0.036450497035646	0.977157301236553	0.998431161219273
Merged-chr14-118231881-1	chr14	118231781	118231981	+	546.0	f1_c57bl6.idr	Intergenic	Intergenic	-4351.0	NR_131969	105245869.0	Mm.460408	NR_131969	ENSMUSG00000090534	LOC105245869	-	uncharacterized LOC105245869	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-6238399-4	chr15	6238289	6238489	+	829.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61400.0	NM_001008702	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-29803273-2	chr6	29803173	29803373	+	575.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001171000, intron 1 of 16)	intron (NM_001171000, intron 1 of 16)	34830.0	NM_001171000	74340.0	Mm.210899	NM_021414	ENSMUSG00000029772	Ahcyl2	4631427C17Rik|AI227036|Adohcyase3|mKIAA0828	S-adenosylhomocysteine hydrolase-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-75463751-4	chr4	75463642	75463842	+	928.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-185450.0	NM_025849	66928.0	Mm.24332	NM_025849	ENSMUSG00000028398	Dmac1	1700027K24Rik|3110001D03Rik|Tmem261	distal membrane arm assembly complex 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85992204-4	chr12	85992104	85992304	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347395, intron 29 of 32)	intron (NM_001347395, intron 29 of 32)	86837.0	NM_009368	21809.0	Mm.3992	NM_009368	ENSMUSG00000021253	Tgfb3	TGF-beta-3|Tgfb-3	transforming growth factor, beta 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-67797741-2	chr13	67797645	67797845	+	765.833374	f0_c57.idr|f1_c57bl6.idr	intron (NR_045194, intron 2 of 2)	intron (NR_045194, intron 2 of 2)	-16071.0	NM_198322	212569.0	Mm.358842	NM_198322	ENSMUSG00000030446	Zfp273	6820416H06Rik|Rslcan1	zinc finger protein 273	protein-coding	1.66393793440609	2.22632089721179	3.27219464113946	2.54870114094933	1.24367294198128	2.51891168803122	2.30631952651332	2.23208927254982	-0.877858262919404	0.349122476777935	0.849534507108232
Merged-chr7-101571121-4	chr7	101571044	101571244	+	872.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR11D|LTR|ERVK	10017.0	NM_019915	11872.0	Mm.57008	NM_019915	ENSMUSG00000030651	Art2b	ART2.2|ARTC2|Art|Ly92b|Rt-6|Rt6|Rt6-2	ADP-ribosyltransferase 2b	protein-coding	1.21979649448316	1.73188809792124	1.32792398903262	1.51422806897166	1.44045741193899	0.831667844931462	0.818783018530775	0.997848681102153	-1.69043008062864	0.211299602469382	0.700323931057359
Merged-chr2-45200786-3	chr2	45200684	45200884	+	855.511108	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-83342.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-73034199-1	chr17	73034099	73034299	+	706.0	f0_c57.idr	Intergenic	Intergenic	-73786.0	NM_001177968	225010.0	Mm.329194	NM_001081071	ENSMUSG00000054469	Lclat1	AI181996|Agpat8|Alcat1|Gm91|Lycat	lysocardiolipin acyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-121616590-2	chr9	121616490	121616690	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026915, intron 1 of 5)	intron (NM_026915, intron 1 of 5)	25003.0	NM_026915	69032.0	Mm.33351	NM_026915	ENSMUSG00000032530	Lyzl4	1810009N24Rik|AI504271|Lyc4|Lyza	lysozyme-like 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-158136455-4	chr2	158136368	158136568	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009373, intron 3 of 12)	intron (NM_009373, intron 3 of 12)	9924.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85639285-2	chr12	85639185	85639385	+	878.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_030887, exon 4 of 4)	3' UTR (NM_030887, exon 4 of 4)	39267.0	NM_001205053	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-95720670-2	chr16	95720570	95720770	+	942.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011809, exon 10 of 10)	3' UTR (NM_011809, exon 10 of 10)	18263.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-30612687-4	chr17	30612595	30612795	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025374)	promoter-TSS (NM_025374)	-36.0	NM_001113560	109801.0	Mm.261984	NM_025374	ENSMUSG00000024026	Glo1	0610009E22Rik|1110008E19Rik|2510049H23Rik|AW550643|GLY1|Glo-1|Glo-1r|Glo-1s|Glo1-r|Glo1-s|Qglo	glyoxalase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-158653095-2	chr2	158652995	158653195	+	849.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-13638.0	NM_153089	228852.0	Mm.150540	NM_153089	ENSMUSG00000037754	Ppp1r16b	ANKRD4|C130078N17Rik|TIMAP|Wdt4	protein phosphatase 1, regulatory (inhibitor) subunit 16B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-32532134-2	chr11	32531992	32532192	+	709.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1174.0	NM_001359178	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-189927860-3	chr1	189927755	189927955	+	820.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5564.0	NM_026796	226830.0	Mm.156895	NM_026796	ENSMUSG00000026603	Smyd2	1110020E07Rik|4930402C15|KMT3C|Zmynd14	SET and MYND domain containing 2	protein-coding	1.62770448968223	1.05017131887544	2.37596421969903	1.23653276569203	2.26336538604757	1.70436921498917	1.91824891859921	1.01226812149	0.30959865285098	0.796787988859317	0.998431161219273
Merged-chr11-29149549-2	chr11	29149449	29149649	+	655.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027869, intron 18 of 27)	PB1D10|SINE|Alu	18798.0	NM_027869	71701.0	Mm.211131	NM_027869	ENSMUSG00000020464	Pnpt1	1200003F12Rik|Old35|PNPase|Pnptl1	polyribonucleotide nucleotidyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-44270104-2	chr10	44270004	44270204	+	815.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358596, intron 1 of 6)	B3|SINE|B2	1765.0	NM_001358596	11793.0	Mm.22264	NM_053069	ENSMUSG00000038160	Atg5	2010107M05Rik|3110067M24Rik|AW319544|Apg5l|Atg5l|C88337|Paddy	autophagy related 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-145765159-4	chr6	145765048	145765248	+	903.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43235.0	NM_027760	71323.0	Mm.158669	NM_027760	ENSMUSG00000030259	Rassf8	5133400D11Rik|AA815821|AW123240|Hoj1|mHoj-1	Ras association (RalGDS/AF-6) domain family (N-terminal) member 8	protein-coding	1.48366598844371	1.67211727938001	1.44864257565087	2.53941930361112	1.17910300176975	1.68515955485592	1.0218697976337	1.94220736491657	-1.06489017461231	0.35230017077405	0.852434760027623
Merged-chr13-109907785-1	chr13	109907685	109907885	+	674.5	f0_balb.idr	intron (NM_011056, intron 8 of 16)	intron (NM_011056, intron 8 of 16)	3976.0	NR_035442	100316683.0		NR_035442	ENSMUSG00000084651	Mir1904	Mirn1904|mmu-mir-1904	microRNA 1904	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-23772772-3	chr13	23772676	23772876	+	814.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9108.0	NM_030609	80838.0	Mm.480242	NM_030609	ENSMUSG00000049539	Hist1h1a	H1.1|H1a|H1f1|H1var3	histone cluster 1, H1a	protein-coding	2.84270432915149	3.60730319496982	2.97080650862619	3.17419798190818	2.86546285369019	3.48093807292842	3.0996259844456	3.2724544240111	0.0273535615476178	0.963836249183239	0.998431161219273
Merged-chr14-31160137-2	chr14	31160037	31160237	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_138672, intron 13 of 68)	intron (NM_138672, intron 13 of 68)	8504.0	NM_138672	192187.0	Mm.220821	NM_138672	ENSMUSG00000042286	Stab1	FEEL-1|FELE-1|MFEEL-1|MS-1|STAB-1|mKIAA0246	stabilin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-119152261-1	chr2	119152161	119152361	+	709.0	f1_c57bl6.idr	intron (NM_001033136, intron 4 of 12)	intron (NM_001033136, intron 4 of 12)	4773.0	NM_001033136	67809.0	Mm.475909	NM_001033136	ENSMUSG00000070730	Rmdn3	1200015F23Rik|AI131757|Fam82a2|Ptpip51|RMD-3|Rmd3	regulator of microtubule dynamics 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36104854-2	chr1	36104754	36104954	+	996.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_015818, exon 2 of 2)	3' UTR (NM_015818, exon 2 of 2)	36454.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-69392375-4	chr13	69392243	69392443	+	940.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	141521.0	NM_198600	210106.0	Mm.315959	NM_198600	ENSMUSG00000034575	Papd7	LAK-1|POLK|Pols|TRF4|TRF4-1	PAP associated domain containing 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-32598387-2	chr11	32598321	32598521	+	711.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 8 of 18)	intron (NM_009288, intron 8 of 18)	-44134.0	NM_001271348	103583.0	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	-1.53362919331644	-1.50201671710775	-1.51157659084044	-1.08120497225282	-1.53141005593807	-1.49994505258991	-1.50941244497383	-1.51802371459528	-1.94474658522739	0.577200604274218	1
Merged-chr7-111124255-2	chr7	111124155	111124355	+	561.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1580.0	NR_015573	75479.0	Mm.381620	NR_015573	ENSMUSG00000110424	1700012D14Rik	-	RIKEN cDNA 1700012D14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-46624361-2	chr17	46624261	46624461	+	635.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175168, intron 1 of 19)	intron (NM_175168, intron 1 of 19)	5143.0	NM_175168	71461.0	Mm.181833	NM_175168	ENSMUSG00000023972	Ptk7	8430404F20Rik|chz|mPTK7/CCK4	PTK7 protein tyrosine kinase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-133494002-2	chr2	133493902	133494102	+	884.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-58157.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-115805488-4	chr9	115805379	115805579	+	911.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-103976.0	NM_028638	73748.0	Mm.485018	NM_028638	ENSMUSG00000056880	Gadl1	1110027M19Rik|ADC|CSADC	glutamate decarboxylase-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-9989836-4	chr2	9989735	9989935	+	963.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027748, intron 2 of 6)	intron (NM_027748, intron 2 of 6)	58774.0	NM_027748	209361.0	Mm.86343	NM_027748	ENSMUSG00000025782	Taf3	140kDa|4933439M23Rik|AW539625|TAF140|TAFII-140|TAFII140|mTAFII140	TATA-box binding protein associated factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-12036769-4	chr4	12036696	12036896	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51161.0	NM_177861	329795.0	Mm.475125	NM_177861	ENSMUSG00000049488	Tmem67	5330408M12Rik|B230117O07|b2b1163.1Clo|b2b1291.1Clo	transmembrane protein 67	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-74962198-2	chr7	74962098	74962298	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16_Mm|LTR|ERVK	-68013.0	NR_131122	75205.0	Mm.399304	NR_131122	ENSMUSG00000108803	4930533N22Rik	Gm44904	RIKEN cDNA 4930533N22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-64025400-2	chr7	64025300	64025500	+	642.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A1|LTR|ERVL-MaLR	-86485.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-120898558-2	chr10	120898458	120898658	+	552.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177092, intron 1 of 6)	CpG	413.0	NM_177092	320183.0	Mm.169755	NM_177092	ENSMUSG00000051236	Msrb3	D430026P16Rik|I-8-23|MsrB2	methionine sulfoxide reductase B3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-35705123-3	chr8	35705042	35705242	+	960.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-116122.0	NR_040376	100504714.0	Mm.381744	NR_040376	ENSMUSG00000097357	Gm16793	-	predicted gene, 16793	ncRNA	-0.298193422112009	-0.28572949552641	0.25946249327033	-0.292977537669308	-0.0355615891413144	-0.284804419725038	0.158707122816849	-0.292427458755472	0.229145403376906	0.926099006838598	1
Merged-chr1-21070772-2	chr1	21070672	21070872	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177409, intron 1 of 10)	intron (NM_177409, intron 1 of 10)	8453.0	NM_177409	170829.0	Mm.185680	NM_177409	ENSMUSG00000041779	Tram2	C330003D03Rik	translocating chain-associating membrane protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-65781747-3	chr14	65781652	65781852	+	700.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-24159.0	NM_023209	52033.0	Mm.24337	NM_023209	ENSMUSG00000022033	Pbk	2810434B10Rik|AW538537|D14Ertd732e|TOPK	PDZ binding kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33754775-2	chr16	33754675	33754875	+	550.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175256, intron 12 of 14)	intron (NM_175256, intron 12 of 14)	-39262.0	NM_010739	17063.0	Mm.3177	NM_010739	ENSMUSG00000022824	Muc13	114/A10|14/A10|AI159736|Lrrp|Ly64|NJ-1	mucin 13, epithelial transmembrane	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-63850604-2	chr13	63850537	63850737	+	741.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361124, intron 8 of 9)	L1MC2|LINE|L1	35397.0	NM_023507	76251.0	Mm.186610	NM_023507	ENSMUSG00000021470	Ercc6l2	0610007P08Rik|1700019D06Rik|9330134C04Rik|Rad26l|Sr278	excision repair cross-complementing rodent repair deficiency, complementation group 6 like 2	protein-coding	0.987633224595767	0.498975248714104	0.489659146439176	0.482421016470562	0.998852615567021	1.17085881311679	1.32210265200124	0.483688762620878	2.10800190947697	0.228070197706549	1
Merged-chr19-24432711-3	chr19	24432663	24432863	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008846, intron 3 of 14)	intron (NM_008846, intron 3 of 14)	44711.0	NM_026520	68034.0	Mm.440181	NM_026520	ENSMUSG00000074922	Fam122a	2410124L17Rik|2900009I07Rik|Gm9849	family with sequence similarity 122, member A	protein-coding	2.71482204813805	1.10893928159137	1.72260545597583	2.06073475692265	2.45297984149244	1.11507336364651	1.08727795360766	2.07240415480297	-0.503720930333681	0.675898047666859	0.99440487726309
Merged-chr1-136169093-2	chr1	136168993	136169193	+	591.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039472, intron 28 of 34)	intron (NM_001039472, intron 28 of 34)	37703.0	NR_153829	16565.0	Mm.276135	NM_019962	ENSMUSG00000041642	Kif21b	2610511N21Rik|mKIAA0449	kinesin family member 21B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-54019671-3	chr18	54019574	54019774	+	713.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	157561.0	NM_152809	70425.0	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-37051591-2	chr17	37051491	37051691	+	552.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019439, intron 6 of 22)	intron (NM_019439, intron 6 of 22)	5625.0	NM_019439	54393.0	Mm.32191	NM_019439	ENSMUSG00000024462	Gabbr1	GABAB1|GABAbR1|bM573K1.1	gamma-aminobutyric acid (GABA) B receptor, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-134203757-2	chr4	134203657	134203857	+	747.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080712)	promoter-TSS (NM_001080712)	-753.0	NM_001080712	665186.0	Mm.318615	NM_001080712	ENSMUSG00000073747	Gm7534	EG665186	predicted gene 7534	protein-coding	-0.756923089476925	-0.130576846443453	-0.906429244322686	-0.909111635078976	-0.912915062975841	-0.894789734710217	-0.905663814006919	-0.908642484352915	-3.16862201039633	0.280510347619474	1
Merged-chr11-69664811-4	chr11	69664753	69664953	+	988.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001291058, exon 5 of 6)	exon (NM_001291058, exon 5 of 6)	1317.0	NM_001291058	12514.0	Mm.15819	NM_009853	ENSMUSG00000018774	Cd68	Lamp4|Scard1|gp110	CD68 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-108683906-4	chr8	108683806	108684006	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30738.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141393032-4	chr7	141392922	141393122	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011528, intron 1 of 7)	intron (NM_011528, intron 1 of 7)	862.0	NM_011528	21351.0	Mm.29182	NM_011528	ENSMUSG00000025503	Taldo1	-	transaldolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-22936484-2	chr2	22936384	22936584	+	651.625	f1_balb.idr|f1_c57bl6.idr	intron (NR_149721, intron 10 of 10)	RSINE1|SINE|B4	40962.0	NM_001355467	56075.0	Mm.249752	NM_019501	ENSMUSG00000026784	Pdss1	2610203G20Rik|2700031G06Rik|TPT|TPT 1|Tprt|mDLP1|mSPS1	prenyl (solanesyl) diphosphate synthase, subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-53587840-4	chr17	53587735	53587935	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001190846, intron 1 of 17)	L2a|LINE|L2	3709.0	NM_001190846	18519.0	Mm.255025	NM_020005	ENSMUSG00000000708	Kat2b	A930006P13Rik|AI461839|AW536563|Pcaf|p/CAF	K(lysine) acetyltransferase 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-27151763-2	chr14	27151663	27151863	+	555.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289686, intron 1 of 12)	intron (NM_001289686, intron 1 of 12)	7770.0	NM_001289686	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-143296658-4	chr7	143296582	143296782	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_001461)	promoter-TSS (NR_001461)	-135.0	NR_001461	63830.0	Mm.356096	NR_001461	ENSMUSG00000101609	Kcnq1ot1	Kvlqt1-as|Lit1|Tssc8	KCNQ1 overlapping transcript 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-114527978-3	chr7	114527877	114528077	+	951.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011055, intron 12 of 15)	intron (NM_011055, intron 12 of 15)	34995.0	NR_110407	244209.0	Mm.108037	NM_177382	ENSMUSG00000030670	Cyp2r1	-	cytochrome P450, family 2, subfamily r, polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-21172372-4	chr13	21172287	21172487	+	985.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	tRNA-Gln-CAG|tRNA|tRNA	-7544.0	NM_009054	19720.0	Mm.314056	NM_009054	ENSMUSG00000021326	Trim27	AW538890|Gm19403|Rfp	tripartite motif-containing 27	protein-coding	5.28212109006208	5.08114039248479	4.74825009513978	5.44367382774006	5.38937437620038	5.41491901001849	5.11820951294601	5.51735161667933	0.233142399842244	0.43213820052704	0.904679012727573
Merged-chr13-13529245-2	chr13	13529145	13529345	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61164.0	NM_010748	17101.0	Mm.342337	NM_010748	ENSMUSG00000019726	Lyst	D13Sfk13|beige|bg	lysosomal trafficking regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-71226174-2	chr10	71226074	71226274	+	590.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009360, exon 7 of 7)	3' UTR (NM_009360, exon 7 of 7)	11870.0	NM_009360	21780.0	Mm.229292	NM_009360	ENSMUSG00000003923	Tfam	AI661103|Hmgts|mtTFA|tsHMG	transcription factor A, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-65330254-2	chr5	65330154	65330354	+	738.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011258, intron 1 of 24)	intron (NM_011258, intron 1 of 24)	5385.0	NM_011258	19687.0	Mm.148877	NM_011258	ENSMUSG00000029191	Rfc1	140kDa|Alp145|RFC140|Recc1	replication factor C (activator 1) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-127080125-4	chr2	127079994	127080194	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026678, intron 1 of 7)	MTD|LTR|ERVL-MaLR	9437.0	NM_026678	109778.0	Mm.22028	NM_026678	ENSMUSG00000001999	Blvra	0610006A11Rik|2500001N03Rik|Blvr	biliverdin reductase A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-118703936-2	chr7	118703846	118704046	+	853.0	f0_balb.idr|f0_c57.idr	intron (NM_019580, intron 1 of 5)	intron (NM_019580, intron 1 of 5)	1792.0	NM_019580	56209.0	Mm.273142	NM_019580	ENSMUSG00000033917	Gde1	1200003M13Rik|Mir16|RGS16	glycerophosphodiester phosphodiesterase 1	protein-coding	4.77056893960785	5.34897794841181	4.18853742583749	3.94591220082893	3.63367743871664	4.58722928873551	3.00096149153651	4.26463903512417	-0.873866656410983	0.0769656077091497	0.421659069084191
Merged-chr1-138993702-1	chr1	138993602	138993802	+	642.5	f0_balb.idr	intron (NM_181347, intron 1 of 20)	intron (NM_181347, intron 1 of 20)	16045.0	NR_108103	78229.0	Mm.437838	NR_108103	ENSMUSG00000104900	4930596I21Rik	-	RIKEN cDNA 4930596I21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-122060863-4	chr14	122060773	122060973	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26199.0	NM_001037744	223262.0	Mm.297637	NM_001037744	ENSMUSG00000071229	Timm8a2	-	translocase of inner mitochondrial membrane 8A2	protein-coding	0.594088200582366	1.76739829518636	2.06418948453767	0.622368567418751	0.59839874596771	1.99776237819352	0.907340533420172	0.625253899898449	-0.724264162054417	0.641516571395253	0.982599433509505
Merged-chr16-38131264-3	chr16	38131160	38131360	+	975.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347232, intron 1 of 11)	MLT1D|LTR|ERVL-MaLR	-42000.0	NR_033221	414072.0	Mm.483602	NR_033221		BC031361	-	cDNA sequence BC031361	ncRNA	1.63168293653235	1.32568473363896	1.28889572040121	2.03916590683733	1.64537606401387	2.38113501090093	1.64783115543454	1.26484490246376	0.574035044087701	0.600410918780311	0.972964840983327
Merged-chr16-38090007-2	chr16	38089907	38090107	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033221)	promoter-TSS (NR_033221)	-747.0	NR_033221	414072.0	Mm.483602	NR_033221		BC031361	-	cDNA sequence BC031361	ncRNA	1.55013095734855	1.24272172593409	0.80462302219523	0.792924650966717	1.73080351954213	1.25246844140707	1.90194177846435	0.794980674569042	1.28322409042704	0.366073803298636	0.861036332257394
Merged-chr2-124735973-2	chr2	124735873	124736073	+	812.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME1|LINE|L1	82392.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-24383618-4	chr5	24383524	24383724	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001002897)	TTS (NM_001002897)	8519.0	NM_001002897	213948.0	Mm.332252	NM_001002897	ENSMUSG00000038295	Atg9b	Apg912|Apg9l2|Apgdc2|Gm574|Nos3as|eONE|sONE	autophagy related 9B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-93462015-4	chr2	93461920	93462120	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271461)	promoter-TSS (NM_001271461)	-169.0	NM_001271461	12521.0	Mm.4261	NM_007656	ENSMUSG00000027215	Cd82	AA682076|AL023070|C33|IA4|Kai1|Tspan27	CD82 antigen	protein-coding	4.95033979990955	5.85239958260758	4.95989011376102	5.65168037017362	4.95574296348186	5.44260262021369	5.52555789745105	4.31784146051292	-0.320737327365234	0.365752280992085	0.861036332257394
Merged-chr5-90742250-4	chr5	90742162	90742362	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17036.0	NM_009141	20311.0	Mm.4660	NM_009141	ENSMUSG00000029371	Cxcl5	AMCF-II|Cxcl6|ENA-78|GCP-2|LIX|Scyb5|Scyb6	chemokine (C-X-C motif) ligand 5	protein-coding	6.40887544938289	6.92771158760162	6.92110693101919	6.57682901950699	6.29615515706098	6.65702349161772	6.59285734831968	6.64011319070564	-0.18155337593481	0.367058707985592	0.862171178232406
Merged-chr7-16119059-1	chr7	16118959	16119159	+	1000.0	f1_balb.idr	promoter-TSS (NM_133727)	promoter-TSS (NM_133727)	-817.0	NM_133727	70394.0	Mm.41101	NM_133727	ENSMUSG00000006021	Kptn	2310042D10Rik|2E4|C030013F01Rik	kaptin	protein-coding	-0.802415726786774	-0.787382979186797	0.23067884335587	-0.795954720465485	-0.801439689780782	-0.786221060657725	-0.791104791999366	-0.795288134095484	-4.08283921478518	0.119072665304076	1
Merged-chr5-132467218-1	chr5	132467118	132467318	+	1000.0	f0_balb.idr	intron (NM_177047, intron 1 of 19)	intron (NM_177047, intron 1 of 19)	75125.0	NM_177047	319974.0	Mm.409595	NM_177047	ENSMUSG00000029673	Auts2	2700063G02Rik|A730011F23Rik|D830032G16Rik	autism susceptibility candidate 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21496535-2	chr9	21496435	21496635	+	571.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029585)	promoter-TSS (NR_029585)	29.0	NR_029585	387194.0		NR_029585	ENSMUSG00000065547	Mir199a-1	Mirn199|Mirn199a-1|mir-199a-1	microRNA 199a-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-29713062-2	chr12	29712973	29713173	+	773.708374	f0_c57.idr|f1_c57bl6.idr	intron (NM_001361657, intron 3 of 24)	intron (NM_001361657, intron 3 of 24)	-26628.0	NR_046080	328075.0	Mm.447832	NR_046080	ENSMUSG00000112663	C630031E19Rik	C630031E19	RIKEN cDNA C630031E19 gene	ncRNA	3.32010348405939	4.16214046610747	3.5204451082137	4.07408172568243	2.42212565826453	3.17379615253651	2.94030082871075	3.43971125334552	-1.20174111063528	0.0373740575791471	0.27492178947025
Merged-chr2-30689802-2	chr2	30689702	30689902	+	608.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11791.0	NR_136917	665635.0	Mm.450149	NR_136917		Gm14486	-	predicted gene 14486	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-90873263-4	chr8	90873104	90873304	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177224, intron 2 of 39)	intron (NM_177224, intron 2 of 39)	44369.0	NM_177224	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	4.80022840930944	4.66521610326794	4.45865644969207	5.9315051430193	5.10925439871227	5.2405325533883	4.93020039140411	5.18293797253809	0.0171556193999155	0.963294612093052	0.998431161219273
Merged-chr12-102391085-10	chr12	102390955	102391155	+	922.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001161365)	TTS (NM_001161365)	48758.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115621302-1	chr11	115621202	115621402	+	717.0	f1_c57bl6.idr	intron (NM_001252396, intron 2 of 5)	B3A|SINE|B2	6993.0	NM_001252394	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	-1.27480050717774	-0.604729833679879	-1.25573295904267	-1.26493563944758	-1.27428069156472	-1.24210192204986	-1.25319678955844	-1.26328836405502	-2.6632876257018	0.439827081912762	1
Merged-chr3-67577634-1	chr3	67577534	67577734	+	554.0	f1_c57bl6.idr	Intergenic	ORR1A2|LTR|ERVL-MaLR	-5134.0	NM_025813	66868.0	Mm.491153	NM_025813	ENSMUSG00000027775	Mfsd1	1200003O06Rik	major facilitator superfamily domain containing 1	protein-coding	-0.790165559603664	-1.02489500587938	-1.03585533914581	-1.03984441570573	-0.903790072809063	-1.02251985593842	-0.719761904227202	-1.03952722498986	0.715062130495518	0.813535411749648	1
Merged-chr18-8694347-3	chr18	8694229	8694429	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-518527.0	NM_008058	14370.0	Mm.184289	NM_008058	ENSMUSG00000036904	Fzd8	Fz8	frizzled class receptor 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41267624-2	chr19	41267524	41267724	+	745.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3620.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-32213310-2	chr19	32213210	32213410	+	559.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 5 of 9)	intron (NM_144792, intron 5 of 9)	-2297.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106488457-3	chr11	106488361	106488561	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023913)	promoter-TSS (NM_023913)	-665.0	NM_023913	78943.0	Mm.340943	NM_023913	ENSMUSG00000020715	Ern1	9030414B18Rik|AI225830|C85377|Ire1a|Ire1alpha|Ire1p	endoplasmic reticulum (ER) to nucleus signalling 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-39522769-3	chr1	39522687	39522887	+	892.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12914.0	NM_028043	52846.0	Mm.259421	NM_028043	ENSMUSG00000003135	Cnot11	2410015L18Rik|C40|D1Bwg0212e	CCR4-NOT transcription complex, subunit 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-93120622-3	chr5	93120539	93120739	+	768.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001009818, intron 1 of 9)	intron (NM_001009818, intron 1 of 9)	27223.0	NM_001347377	52398.0	Mm.394184	NM_001009818	ENSMUSG00000058013	Sept11	6230410I01Rik|AW548875|D5Ertd606e	septin 11	protein-coding	0.833489070893995	0.456502271768961	1.15718295251899	0.441159585892173	0.431630887093263	0.458442755932022	1.17033933740841	1.01670341567447	0.275684707799431	0.877298057642735	1
Merged-chr12-110841821-3	chr12	110841735	110841935	+	972.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011973)	promoter-TSS (NM_011973)	806.0	NR_152102	66709.0	Mm.390504	NR_152102		4921507G05Rik	-	RIKEN cDNA 4921507G05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-107782828-3	chr13	107782719	107782919	+	803.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 3 of 14)	intron (NM_145456, intron 3 of 14)	95422.0	NR_045900	72257.0	Mm.234155	NR_045900	ENSMUSG00000102000	1700006H21Rik	-	RIKEN cDNA 1700006H21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-121904565-4	chr9	121904480	121904680	+	912.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276719, intron 2 of 3)	intron (NM_001276719, intron 2 of 3)	6225.0	NM_021609	59289.0	Mm.258105	NM_021609	ENSMUSG00000044534	Ackr2	AI464239|CCR10|CCR9|Ccbp2|Cmkbr9|D6	atypical chemokine receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-21405097-1	chr12	21404997	21405197	+	890.0	f1_balb.idr	intron (NM_011739, intron 1 of 4)	intron (NM_011739, intron 1 of 4)	12339.0	NM_011739	22630.0	Mm.289630	NM_011739	ENSMUSG00000076432	Ywhaq	2700028P07Rik|AA409740|AU021156|R74690	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	protein-coding	0.428524407477435	-0.244586783883269	-0.0790984831496297	0.0392453786468869	-0.116806908060628	-0.243647747266022	-0.247828396618274	-0.251384153538651	-2.80745709828688	0.219191115904917	1
Merged-chr9-83682142-3	chr9	83682043	83682243	+	891.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9332.0	NR_046066	100039222.0	Mm.405596	NR_046066	ENSMUSG00000100155	Gm2109	-	predicted gene 2109	ncRNA	0.841382999797919	0.447670114011894	1.36571719375919	0.430578601191251	0.851162910024146	0.44982044128671	1.19070627436574	0.431891482960959	-0.306100880615603	0.862381695180579	1
Merged-chr6-29241893-4	chr6	29241783	29241983	+	831.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER119|DNA|hAT-Charlie	-25519.0	NM_001302934	23917.0	Mm.260707	NM_011829	ENSMUSG00000003500	Impdh1	B930086D20Rik|IMPDH-I	inosine monophosphate dehydrogenase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-155755922-4	chr2	155755823	155756023	+	934.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011171)	TTS (NM_011171)	4706.0	NM_011171	19124.0	Mm.3243	NM_011171	ENSMUSG00000027611	Procr	AI325044|Ccca|Ccd41|Epcr	protein C receptor, endothelial	protein-coding	4.07865360974421	3.99773608756209	4.12790056178341	4.28003482658931	3.6001291371819	4.02601733325753	3.96752219518641	3.84983324141229	-0.364120769282747	0.404181638684345	0.889249016063832
Merged-chr16-91727537-4	chr16	91727422	91727622	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026994, intron 1 of 11)	intron (NM_026994, intron 1 of 11)	1280.0	NM_026994	66609.0	Mm.109823	NM_026994	ENSMUSG00000058240	Cryzl1	2210407J23Rik|2410006O11Rik|QOH-1	crystallin, zeta (quinone reductase)-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-144935429-4	chr5	144935312	144935512	+	910.9249880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038627, intron 1 of 17)	intron (NM_001038627, intron 1 of 17)	30418.0	NM_001038627	75788.0	Mm.27735	NM_029438	ENSMUSG00000038780	Smurf1	4930431E10Rik|mKIAA1625	SMAD specific E3 ubiquitin protein ligase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-17733250-2	chr11	17733153	17733353	+	680.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	220622.0	NM_026576	68145.0	Mm.178684	NM_026576	ENSMUSG00000016984	Etaa1	5730466H23Rik|AA672646	Ewing tumor-associated antigen 1	protein-coding	0.590746101924764	1.92829538842249	2.5528242429554	2.58853347899669	0.597099842094402	0.690215749650438	0.661726368366705	0.636114366648653	-5.63568450445942	0.000185134059261679	0.00506361347193379
Merged-chr1-88245000-2	chr1	88244900	88245100	+	895.125	f1_balb.idr|f1_c57bl6.idr	exon (NM_001281466, exon 23 of 42)	exon (NM_001281466, exon 23 of 42)	17980.0	NM_001281466	100040766.0	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	Heatr7b1	maestro heat-like repeat family member 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-54093786-2	chr11	54093686	54093886	+	697.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7138.0	NM_001136076	18452.0	Mm.3705	NM_011031	ENSMUSG00000018906	P4ha2	AA407196|C76437|P4hl	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80642770-2	chr10	80642670	80642870	+	691.166626	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_145361, exon 9 of 9)	3' UTR (NM_145361, exon 9 of 9)	13114.0	NM_001159591	103236.0	Mm.29873	NM_134002	ENSMUSG00000003345	Csnk1g2	2810429I12Rik|AI463719	casein kinase 1, gamma 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-103755494-4	chr5	103755404	103755604	+	920.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080798, intron 1 of 19)	intron (NM_001080798, intron 1 of 19)	931.0	NM_001080798	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-40708962-4	chr17	40708877	40709077	+	982.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur1|LINE|L1	-18143.0	NM_001038500	619517.0	Mm.391018	NM_001038500	ENSMUSG00000073396	Esp1	EG619517|Gm6084	exocrine gland secreted peptide 1	protein-coding	4.46338820314457	4.3848884753916	3.75144984890945	3.64701346194985	3.628532539326	3.64846904580342	3.92527233024541	3.31954882802441	-0.66358066723167	0.169540040456149	0.63646477014796
Merged-chr6-125146505-2	chr6	125146405	125146605	+	659.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039669, intron 1 of 9)	intron (NM_001039669, intron 1 of 9)	1281.0	NM_001302779	320678.0	Mm.129415	NM_178787	ENSMUSG00000038271	Iffo1	4733401N06Rik|A930037G23Rik|HOM-TES-103|Iffo	intermediate filament family orphan 1	protein-coding	-0.289851946104314	-0.737899168765768	-0.740932179010924	-0.743264539078787	-0.280173431323445	-0.737213951634147	-0.740264187498491	-0.742857569821679	0.0418983010157508	0.98887086484455	1
Merged-chr2-59338639-4	chr2	59338514	59338714	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 13 of 20)	intron (NM_175464, intron 13 of 20)	48068.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69767682-4	chr11	69767583	69767783	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029348, intron 1 of 3)	intron (NM_029348, intron 1 of 3)	1771.0	NM_029348	75580.0	Mm.426361	NM_029348	ENSMUSG00000018750	Zbtb4	2310026P19Rik|9230111I22Rik|mKIAA1538	zinc finger and BTB domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-82564555-2	chr18	82564455	82564655	+	863.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025251, intron 2 of 6)	intron (NM_001025251, intron 2 of 6)	10047.0	NM_001025254	17196.0	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99401604-4	chr7	99401503	99401703	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201352, intron 2 of 17)	MIR|SINE|MIR	20085.0	NM_001362166	233552.0	Mm.286317	NM_201352	ENSMUSG00000035314	Gdpd5	BC024955|Gde2	glycerophosphodiester phosphodiesterase domain containing 5	protein-coding	2.60234434786658	2.67029165782901	2.58114821386947	3.48716257608605	2.96982937653452	3.04426944752166	2.84150468103801	2.38456676387438	-0.1318128333678	0.850031781239219	0.998431161219273
Merged-chr13-13349519-3	chr13	13349421	13349621	+	862.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44103.0	NM_031999	83924.0	Mm.379269	NM_031999	ENSMUSG00000021306	Gpr137b	AI788917|AU016435|AW546472|C730041E01|C80550|C80741|D13Abb1e|Tm7sf1	G protein-coupled receptor 137B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-4254600-2	chr8	4254500	4254700	+	592.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_133968, exon 3 of 5)	exon (NM_133968, exon 3 of 5)	1498.0	NM_133968	102209.0	Mm.28452	NM_133968	ENSMUSG00000011837	Snapc2	0610007H10Rik|AU015675	small nuclear RNA activating complex, polypeptide 2	protein-coding	-0.499940950918087	-0.487518524828365	0.0891561271406926	-0.494726023626598	-0.499164980458282	-0.486601867615524	0.100277611126392	-0.494177430718284	0.0410194320726077	0.98816738256539	1
Merged-chr9-58269561-4	chr9	58269453	58269653	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16389.0	NM_026942	69106.0	Mm.216502	NM_026942	ENSMUSG00000032333	Stoml1	1810015E19Rik|AI847431|SLP1|STORP|UNC24|WPB72	stomatin-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167637717-2	chr2	167637617	167637817	+	841.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR17|LTR|ERVK	-5712.0	NM_023230	66589.0	Mm.278783	NM_023230	ENSMUSG00000078923	Ube2v1	0610011J09Rik|AI256840|CROC-1|CROC1|D7Bwg1382e|UEV-1	ubiquitin-conjugating enzyme E2 variant 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81523782-2	chr10	81523682	81523882	+	873.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_010304, intron 1 of 6)	intron (NM_010304, intron 1 of 6)	443.0	NM_010304	14676.0	Mm.1546	NM_010304	ENSMUSG00000034792	Gna15	G[a]15|Galpha15	guanine nucleotide binding protein, alpha 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-146221453-4	chr5	146221363	146221563	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001256086)	promoter-TSS (NM_001256086)	-6.0	NM_028774	74132.0	Mm.26696	NM_028774	ENSMUSG00000029634	Rnf6	1200013I08Rik|5730419H05Rik|AA537053	ring finger protein (C3H2C3 type) 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123901169-1	chr5	123901069	123901269	+	713.0	f1_balb.idr	Intergenic	B1_Mus1|SINE|Alu	-6106.0	NM_026603	68184.0	Mm.28549	NM_026603	ENSMUSG00000023106	Denr	1500003K04Rik	density-regulated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-6391355-2	chr15	6391255	6391455	+	888.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037905, intron 1 of 13)	intron (NM_001037905, intron 1 of 13)	4607.0	NM_001310446	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-47647118-4	chr14	47647021	47647221	+	919.05835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2190.0	NM_001347527	16709.0	Mm.3110	NM_008477	ENSMUSG00000021843	Ktn1	-	kinectin 1	protein-coding	5.45138466147898	5.4252882303233	4.7070519665678	4.7634243513631	5.59211769369292	5.12468222552221	5.83729277743541	5.69222657909658	0.525031879124115	0.0900714471501026	0.4635957997593
Merged-chr3-51750203-2	chr3	51750103	51750303	+	602.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 2 of 4)	intron (NM_001004176, intron 2 of 4)	89024.0	NM_001310482	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133553189-4	chr4	133552991	133553191	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011850)	promoter-TSS (NM_011850)	-285.0	NM_011850	23957.0	Mm.346759	NM_011850	ENSMUSG00000037583	Nr0b2	SHP|SHP-1|Shp1	nuclear receptor subfamily 0, group B, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116840646-1	chr11	116840546	116840746	+	1000.0	f1_c57bl6.idr	intron (NM_033398, intron 3 of 5)	intron (NM_033398, intron 3 of 5)	2803.0	NM_033398	107817.0	Mm.481684	NM_033398	ENSMUSG00000056962	Jmjd6	5730436I23Rik|D11Ertd195e|PSR|PtdSerR|Ptdsr|mKIAA0585	jumonji domain containing 6	protein-coding	-0.0320172940615866	-0.0140612983621756	-0.0199239578721791	0.798697098784224	0.253011192024366	-0.0127422904785029	-0.0186293042059237	0.534961856692178	-0.262848276484875	0.906418867991274	1
Merged-chr9-110131969-4	chr9	110131850	110132050	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009211)	promoter-TSS (NM_009211)	-74.0	NM_009211	20588.0	Mm.85410	NM_009211	ENSMUSG00000032481	Smarcc1	AI115498|BAF155|Rsc8|SRG3|msp3	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-38567596-3	chr15	38567489	38567689	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045757, intron 2 of 2)	intron (NR_045757, intron 2 of 2)	27345.0	NR_045757	69679.0	Mm.416890	NR_045757	ENSMUSG00000102106	2310043O21Rik	-	RIKEN cDNA 2310043O21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-31025717-4	chr2	31025613	31025813	+	964.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001177649)	TTS (NM_001177649)	43434.0	NM_028846	74270.0	Mm.346654	NM_028846	ENSMUSG00000026854	Usp20	1700055M05Rik|AI467231|Vdu2	ubiquitin specific peptidase 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-99194291-2	chr10	99194191	99194391	+	861.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_153333, intron 12 of 12)	intron (NR_153333, intron 12 of 12)	-68940.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-151036704-4	chr1	151036624	151036824	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43289.0	NM_001024720	545370.0	Mm.379425	NM_001024720	ENSMUSG00000066842	Hmcn1	EG545370|FIBL-6|Gm201	hemicentin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65540444-2	chr9	65540344	65540544	+	987.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	39643.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45457470-4	chr7	45457363	45457563	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010240)	TTS (NM_010240)	2423.0	NM_010240	14325.0	Mm.30357	NM_010240	ENSMUSG00000050708	Ftl1	Ftl|Ftl-1|L-ferritin	ferritin light polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-21962317-3	chr17	21962190	21962390	+	968.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001025373)	promoter-TSS (NM_001025373)	174.0	NM_001199048	73233.0	Mm.311219	NM_001199048	ENSMUSG00000071267	Zfp942	3110048L19Rik	zinc finger protein 942	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-87625572-2	chr6	87625472	87625672	+	570.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-34829.0	NM_021381	58182.0	Mm.333226	NM_021381	ENSMUSG00000049409	Prokr1	EG-VEGFR1|Gpr73|Pk-r1|Pkr1	prokineticin receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-82870141-2	chr18	82870041	82870241	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14244.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76068840-2	chr15	76068740	76068940	+	570.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310542, intron 1 of 36)	intron (NM_001310542, intron 1 of 36)	944.0	NM_134089	105782.0	Mm.25568	NM_134089	ENSMUSG00000022568	Scrib	AI118201|CRIB|Crc|SCRIB1|Scrb1|mKIAA0147|vartul	scribbled planar cell polarity	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-95289352-2	chr10	95289252	95289452	+	644.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001330138, intron 2 of 2)	RLTR20A|LTR|ERVK	34357.0	NM_001330138	12905.0	Mm.473739	NM_009950	ENSMUSG00000045867	Cradd	RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10246261-2	chr19	10246161	10246361	+	634.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_198114, exon 20 of 20)	3' UTR (NM_198114, exon 20 of 20)	-5513.0	NM_001033481	225908.0	Mm.329716	NM_001033481	ENSMUSG00000036098	Myrf	6030439E18|Gm1804|Gm98|Mrf	myelin regulatory factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-74536554-2	chr17	74536454	74536654	+	661.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007566, intron 1 of 72)	B1_Mm|SINE|Alu	8259.0	NM_007566	12211.0	Mm.442564	NM_007566	ENSMUSG00000024073	Birc6	A430032G04Rik|A430040A19Rik|AA501170|Bruce|D630005A10Rik|mKIAA1289	baculoviral IAP repeat-containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-75146811-4	chr10	75146769	75146969	+	991.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081412, intron 8 of 22)	intron (NM_001081412, intron 8 of 22)	-65204.0	NM_153406	74392.0	Mm.27716	NM_153406	ENSMUSG00000033444	Specc1l	4930470P14Rik|4932439K10Rik|9530057A13Rik|AI317249|Cytsa|mKIAA0376	sperm antigen with calponin homology and coiled-coil domains 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-63324272-4	chr17	63324177	63324377	+	795.483337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015794, intron 6 of 8)	intron (NM_015794, intron 6 of 8)	-11304.0	NR_130176	414079.0	Mm.444282	NR_130176	ENSMUSG00000090565	4930405O22Rik	-	RIKEN cDNA 4930405O22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-4000767-3	chr15	4000665	4000865	+	650.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045740, intron 2 of 2)	L1MD2|LINE|L1	4726.0	NR_045740	328489.0	Mm.447020	NR_045740	ENSMUSG00000097662	Gm2093	100039196|A630020A06	predicted gene 2093	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-4808844-4	chr6	4808743	4808943	+	887.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER89-int|LTR|ERV1	61537.0	NM_130877	170676.0	Mm.320575	NM_130877	ENSMUSG00000092035	Peg10	AA407948|Edr|HB-1|MEF3L|Mar2|Mart2|MyEF-3|Rtl2	paternally expressed 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-128363433-4	chr8	128363337	128363537	+	773.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358959, intron 2 of 16)	intron (NM_001358959, intron 2 of 16)	4196.0	NR_035436	100316680.0		NR_035436	ENSMUSG00000084523	Mir1903	Mirn1903|mmu-mir-1903	microRNA 1903	ncRNA	1.97734344278872	2.38948777024341	1.74099946575261	3.04334350914657	3.21626711867193	2.40742034328307	2.46823296728059	3.19454745420347	0.959233490848964	0.232198864027028	0.727141631441522
Merged-chr3-107234197-2	chr3	107234097	107234297	+	576.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001256174)	TTS (NM_001256174)	3583.0	NM_001256174	319929.0	Mm.30453	NM_001256174	ENSMUSG00000094613	A630076J17Rik	-	RIKEN cDNA A630076J17 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-120567094-1	chr2	120566994	120567194	+	784.0	f1_balb.idr	promoter-TSS (NM_001177793)	promoter-TSS (NM_001177793)	-577.0	NM_001177792	20619.0	Mm.245715	NM_009222	ENSMUSG00000027287	Snap23	23kDa|AA408749|SNAP-23|Sndt|Syndet	synaptosomal-associated protein 23	protein-coding	1.73983237136342	1.03381049796221	1.7739031122456	0.990864533896798	2.27022089560152	1.85711508183892	1.01526428024466	2.46476314514401	1.62234891109268	0.187173614460919	0.664804329870369
Merged-chr11-34074691-4	chr11	34074585	34074785	+	859.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010696, intron 8 of 20)	intron (NM_010696, intron 8 of 20)	23869.0	NR_155520	76874.0	Mm.437529	NR_155520		4930469K13Rik	-	RIKEN cDNA 4930469K13 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-10048641-4	chr2	10048517	10048717	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027748)	promoter-TSS (NM_027748)	-8.0	NM_027748	209361.0	Mm.86343	NM_027748	ENSMUSG00000025782	Taf3	140kDa|4933439M23Rik|AW539625|TAF140|TAFII-140|TAFII140|mTAFII140	TATA-box binding protein associated factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-43742876-4	chr10	43742770	43742970	+	939.258301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-3288.0	NR_040581	69443.0	Mm.484042	NR_040581	ENSMUSG00000111422	1700027J07Rik	-	RIKEN cDNA 1700027J07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-53267103-2	chr18	53267003	53267203	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029394, intron 1 of 6)	intron (NM_029394, intron 1 of 6)	21441.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-10706807-4	chr18	10706706	10706906	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045379)	promoter-TSS (NR_045379)	-54.0	NR_045379	75370.0	Mm.159511	NR_045379	ENSMUSG00000097387	4930563E18Rik	-	RIKEN cDNA 4930563E18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-11555787-2	chr11	11555687	11555887	+	696.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	66521.0	NM_028669	73862.0	Mm.159077	NM_028669	ENSMUSG00000020191	Spata48	4930415F15Rik	spermatogenesis associated 48	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-37030794-2	chr1	37030694	37030894	+	867.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-91267.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70796016-2	chr8	70795908	70796108	+	754.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2c|LINE|L2	-2127.0	NR_106099	102466823.0		NR_106099	ENSMUSG00000099031	Mir7240	Gm27487|mmu-mir-7240	microRNA 7240	ncRNA	0.609499935579781	0.869187528076178	0.338233796580647	1.17781644975632	0.323016291205804	0.34813590967375	0.340022395366743	0.908051125668383	-1.58874865114238	0.392388922331434	1
Merged-chr8-122460292-1	chr8	122460192	122460392	+	576.0	f1_c57bl6.idr	intron (NM_013914, intron 1 of 2)	intron (NM_013914, intron 1 of 2)	400.0	NM_013914	30927.0	Mm.103673	NM_013914	ENSMUSG00000006587	Snai3	AI643946|Smuc|Zfp293	snail family zinc finger 3	protein-coding	1.68826290647111	1.78374184308445	2.22137072912874	1.89031121580547	0.971584121054556	1.65163541215205	1.01433516650097	1.39242052322707	-2.15924379735126	0.0705484976392999	0.399515831345022
Merged-chr8-119838970-3	chr8	119838883	119839083	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028071, intron 2 of 3)	intron (NM_028071, intron 2 of 3)	1596.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-176833386-3	chr1	176833298	176833498	+	845.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357390, intron 5 of 18)	MIRb|SINE|MIR	2735.0	NR_037996	15365.0	Mm.441435	NR_037996		Hmga2-ps1	EG666235|Gm7996|Hmgic-ps1|[y]i-c	high mobility group AT-hook 2, pseudogene 1	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-31036238-2	chr7	31036138	31036338	+	675.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001287217, intron 6 of 8)	MLT1H|LTR|ERVL-MaLR	4079.0	NR_106017	102465635.0		NR_106017	ENSMUSG00000098783	Mir7050	Gm27578|mmu-mir-7050	microRNA 7050	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-21205315-3	chr2	21205223	21205423	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027728)	promoter-TSS (NM_027728)	42.0	NM_027728	71233.0	Mm.27658	NM_027728	ENSMUSG00000026679	Enkur	4933434I06Rik|AU016229	enkurin, TRPC channel interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-118848432-2	chr12	118848332	118848532	+	806.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_177082, exon 3 of 3)	exon (NM_177082, exon 3 of 3)	2103.0	NM_177082	320145.0	Mm.51682	NM_177082	ENSMUSG00000048562	Sp8	D930049B17Rik|mBtd	trans-acting transcription factor 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129069039-4	chr4	129068919	129069119	+	922.025024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029219, intron 1 of 8)	intron (NM_029219, intron 1 of 8)	10748.0	NM_029219	75234.0	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141664832-2	chr4	141664732	141664932	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033150)	promoter-TSS (NM_001033150)	-717.0	NM_001033150	69582.0	Mm.33220	NM_001033150	ENSMUSG00000028917	Plekhm2	2310034J19Rik|AI854247|mKIAA0842	pleckstrin homology domain containing, family M (with RUN domain) member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-109517588-2	chr7	109517488	109517688	+	753.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-1607.0	NM_011975	26451.0	Mm.305750	NM_011975	ENSMUSG00000046364	Rpl27a	L27'|L27A|L29	ribosomal protein L27A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-78918611-2	chr17	78918510	78918710	+	758.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001024806)	TTS (NM_001024806)	2111.0	NM_001177402	68554.0	Mm.391820	NM_001177402	ENSMUSG00000062691	Cebpzos	1110001A16Rik	CCAAT/enhancer binding protein (C/EBP), zeta, opposite strand	protein-coding	-1.8418762459921	-1.8125357239735	-1.82140854000656	-1.82869693527674	-1.56059678980999	-1.8106129477253	-1.81939992894326	-1.82739231600805	1.3620893379502	0.699511506488145	1
Merged-chr1-179232632-2	chr1	179232532	179232732	+	615.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027188, intron 5 of 11)	intron (NM_027188, intron 5 of 11)	285409.0	NM_027188	69726.0	Mm.222338	NM_027188	ENSMUSG00000055067	Smyd3	2410008A19Rik|Zmynd1	SET and MYND domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-38013325-4	chr1	38013203	38013403	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198303, intron 1 of 23)	intron (NM_198303, intron 1 of 23)	15293.0	NM_198303	226982.0	Mm.260943	NM_198303	ENSMUSG00000026083	Eif5b	A030003E17Rik|BC018347|IF2	eukaryotic translation initiation factor 5B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-11297534-3	chr8	11297434	11297634	+	670.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009931, intron 1 of 51)	intron (NM_009931, intron 1 of 51)	-15271.0	NM_009932	12827.0	Mm.181021	NM_009932	ENSMUSG00000031503	Col4a2	Col4a-2	collagen, type IV, alpha 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-53951280-4	chr18	53951189	53951389	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152809, intron 12 of 12)	intron (NM_152809, intron 12 of 12)	89176.0	NM_152809	70425.0	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-34465025-3	chr4	34464937	34465137	+	612.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	-85578.0	NM_001007589	433693.0	Mm.389532	NM_026019	ENSMUSG00000028291	Akirin2	2700059D21Rik|AA114675|AA522011|AU019887|Akirin-2	akirin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101987213-2	chr11	101987113	101987313	+	832.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_029287, exon 1 of 6)	exon (NM_029287, exon 1 of 6)	157.0	NM_029287	75437.0	Mm.108632	NM_029287	ENSMUSG00000010841	1700006E09Rik	Cfap97d1	RIKEN cDNA 1700006E09 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-79931872-2	chr10	79931772	79931972	+	675.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_007880, exon 3 of 9)	exon (NM_007880, exon 3 of 9)	4531.0	NM_001288625	13496.0	Mm.301282	NM_007880	ENSMUSG00000019564	Arid3a	Bright|Dri1|Dril1	AT rich interactive domain 3A (BRIGHT-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135300475-4	chr4	135300380	135300580	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-27720.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3914107-2	chr19	3914007	3914207	+	738.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_026316, intron 9 of 9)	intron (NM_026316, intron 9 of 9)	-1333.0	NM_001271444	225887.0	Mm.44227	NM_144870	ENSMUSG00000059734	Ndufs8	BC021616|CI-23kD|TYKY	NADH dehydrogenase (ubiquinone) Fe-S protein 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-120623153-3	chr2	120623049	120623249	+	889.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13554.0	NM_001290807	66296.0	Mm.221900	NM_025475	ENSMUSG00000027285	Haus2	1700101G24Rik|2410007P03Rik|AU020217|Cep27	HAUS augmin-like complex, subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-84618841-4	chr2	84618735	84618935	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355064, intron 5 of 18)	MIRc|SINE|MIR	30645.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-41773684-4	chr4	41773588	41773788	+	969.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_154591, intron 2 of 4)	CpG-9830	413.0	NM_001361246	20301.0	Mm.335946	NM_011336	ENSMUSG00000073888	Ccl27a	ALP|AW558992|CTACK|CTAK|Ccl27|ESkine|ILC|PESKY|Scya27|Scya27a	chemokine (C-C motif) ligand 27A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-93045647-4	chr2	93045553	93045753	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177536, intron 1 of 6)	CpG	491.0	NM_001177536	100042784.0	Mm.102816	NM_001177536	ENSMUSG00000075028	Prdm11	8030443D09Rik|AA163972|Gm707	PR domain containing 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-6674580-2	chr2	6674481	6674681	+	582.0	f0_balb.idr|f0_c57.idr	intron (NM_001110232, intron 4 of 15)	intron (NM_001110232, intron 4 of 15)	47081.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-128242611-2	chr7	128242511	128242711	+	717.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_146205, exon 4 of 6)	exon (NM_146205, exon 4 of 6)	-4201.0	NM_001289553	21804.0	Mm.3248	NM_009365	ENSMUSG00000030782	Tgfb1i1	ARA55|Hic5|TSC-5|hic-5	transforming growth factor beta 1 induced transcript 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-29104434-1	chr19	29104334	29104534	+	574.0	f1_c57bl6.idr	intron (NM_021525, intron 1 of 8)	intron (NM_021525, intron 1 of 8)	3059.0	NM_021525	59028.0	Mm.28630	NM_021525	ENSMUSG00000024785	Rcl1	2310040A02Rik|AI789745|C76567|RPCL1|Rnac	RNA terminal phosphate cyclase-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-170121441-3	chr2	170121345	170121545	+	891.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159683, intron 2 of 6)	intron (NM_001159683, intron 2 of 6)	9775.0	NM_001033299	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	0.882496375609482	0.381396207841437	0.57097895670767	0.365163818539387	0.521496186537675	1.38525655658619	0.887714798955291	0.366410096234024	1.50789695208026	0.381174454642983	1
Merged-chr9-98973299-3	chr9	98973200	98973400	+	736.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-13073.0	NM_011810	23873.0	Mm.74605	NM_011810	ENSMUSG00000032463	Faim	-	Fas apoptotic inhibitory molecule	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-5038219-3	chr6	5038118	5038318	+	628.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181595, intron 2 of 15)	MTA_Mm|LTR|ERVL-MaLR	134898.0	NM_181595	243725.0	Mm.332901	NM_181595	ENSMUSG00000032827	Ppp1r9a	2810430P21Rik|4930518N04Rik|5330407E15|A230094E16Rik|BB181831|NRB|mKIAA1222|neurabin-I	protein phosphatase 1, regulatory (inhibitor) subunit 9A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125390051-2	chr6	125389951	125390151	+	570.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9547.0	NM_198604	213522.0	Mm.333396	NM_198604	ENSMUSG00000038167	Plekhg6	BC026778|Gm155	pleckstrin homology domain containing, family G (with RhoGef domain) member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-121845725-6	chr5	121845612	121845812	+	948.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3285.0	NM_175474	231717.0	Mm.12654	NM_175474	ENSMUSG00000044134	Fam109a	A230106M15Rik|AU017694|IPIP27A|Ses1	family with sequence similarity 109, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-87662572-4	chr11	87662476	87662676	+	946.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172448)	promoter-TSS (NM_172448)	-511.0	NM_172448	207742.0	Mm.440230	NM_172448	ENSMUSG00000034177	Rnf43	4732452J19Rik	ring finger protein 43	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-75830880-2	chr15	75830780	75830980	+	551.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_172121, intron 3 of 11)	intron (NM_172121, intron 3 of 11)	11028.0	NM_172121	223642.0	Mm.209800	NM_172121	ENSMUSG00000075600	Zc3h3	BC049953|Kiaa0150|Smicl|Zc3hdc3	zinc finger CCCH type containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31390594-2	chr14	31390494	31390694	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347585, intron 2 of 7)	intron (NM_001347585, intron 2 of 7)	27083.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-61602416-3	chr10	61602264	61602464	+	833.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177511, intron 1 of 3)	intron (NM_001177511, intron 1 of 3)	6880.0	NM_001177511	237362.0	Mm.131297	NM_001177511	ENSMUSG00000020090	Npffr1	Gm236|Gpr147|NPFF1|NPFF1R|OT7T022	neuropeptide FF receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-133163913-4	chr1	133163816	133164016	+	997.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	32750.0	NM_133819	108954.0	Mm.293628	NM_133819	ENSMUSG00000046062	Ppp1r15b	1810033K10Rik|AI606441|C530022L24Rik|CReP	protein phosphatase 1, regulatory (inhibitor) subunit 15b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4914297-1	chr16	4914197	4914397	+	606.0	f0_balb.idr	intron (NM_001357062, intron 5 of 17)	intron (NM_001357062, intron 5 of 17)	-24814.0	NM_001316715	66911.0	Mm.428698	NM_025839	ENSMUSG00000022516	Nudt16l1	1110001K21Rik|5330437I08Rik|Sdos	nudix (nucleoside diphosphate linked moiety X)-type motif 16-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-15803652-4	chr17	15803571	15803771	+	955.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22915.0	NM_178615	68799.0	Mm.293466	NM_178615	ENSMUSG00000048027	Rgmb	1110059F19Rik|DRAGON	repulsive guidance molecule family member B	protein-coding	-1.43172712806865	-1.3992492906874	-1.40907085678131	-1.41713858359971	-0.932192548427885	-1.39712091634321	-1.40684746950024	-1.41569446435649	2.19283191591698	0.528233640655333	1
Merged-chr2-71655997-3	chr2	71655950	71656150	+	593.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_039557, intron 2 of 3).2	intron (NR_039557, intron 2 of 3).2	-63367.0	NR_037979	381371.0	Mm.330284	NM_201366	ENSMUSG00000064263	Platr26	Gm1631	pluripotency associated transcript 26	ncRNA	1.98286033386383	1.1608926467073	1.3847455594702	2.20043206599504	2.48554010806396	1.16700057779439	1.77830066443505	2.68347279819809	1.0255910112196	0.356708678832497	0.85378439273359
Merged-chr5-4595205-4	chr5	4595099	4595299	+	721.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	163017.0	NM_021457	14362.0	Mm.246003	NM_021457	ENSMUSG00000044674	Fzd1	AW227548|FZ-1|Fz1	frizzled class receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-61198173-2	chr9	61198073	61198273	+	595.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	59658.0	NR_045705	619328.0	Mm.325722	NR_045705	ENSMUSG00000110998	I730028E13Rik	-	RIKEN cDNA I730028E13 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30928501-4	chr2	30928392	30928592	+	890.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24509.0	NM_133673	30934.0	Mm.249164	NM_133673	ENSMUSG00000026848	Tor1b	2610016F05Rik|DQ1|torsinB	torsin family 1, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33891768-4	chr16	33891667	33891867	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 5 of 14)	intron (NM_001145884, intron 5 of 14)	62102.0	NM_001145884	16419.0	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-93954373-2	chr11	93954273	93954473	+	786.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077529, intron 1 of 3)	intron (NM_001077529, intron 1 of 3)	1410.0	NM_001077529	18103.0	Mm.1260	NM_008705	ENSMUSG00000020857	Nme2	NM23-H2|NM23B|nm23-M2	NME/NM23 nucleoside diphosphate kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-15494065-6	chr9	15493968	15494168	+	886.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359604, intron 1 of 2)	CpG	636.0	NM_001359604	170748.0	Mm.86572	NM_133214	ENSMUSG00000058173	Smco4	Fn5	single-pass membrane protein with coiled-coil domains 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-33624119-2	chr10	33624019	33624219	+	789.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_152723)	promoter-TSS (NR_152723)	-127.0	NR_152723	102632938.0	Mm.417656	NR_152723	ENSMUSG00000090087	Gm15939	-	predicted gene 15939	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-128711028-2	chr4	128710928	128711128	+	945.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_018774, intron 5 of 14)	intron (NM_018774, intron 5 of 14)	-16543.0	NM_001195083	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-80234706-2	chr15	80234606	80234806	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001357659, exon 2 of 7)	5' UTR (NM_001357659, exon 2 of 7)	626.0	NM_178719	239555.0	Mm.307163	NM_178719	ENSMUSG00000022412	Mief1	A230016E22|AI452372|Smcr7l	mitochondrial elongation factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28810746-4	chr7	28810645	28810845	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177301)	promoter-TSS (NM_177301)	-145.0	NM_177301	15388.0	Mm.9043	NM_177301	ENSMUSG00000015165	Hnrnpl	C79783|D830027H13Rik|Hnrpl	heterogeneous nuclear ribonucleoprotein L	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81024977-2	chr10	81024877	81025077	+	617.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145217, intron 1 of 1)	intron (NM_145217, intron 1 of 1)	400.0	NM_145217	208666.0	Mm.44995	NM_145217	ENSMUSG00000043670	Diras1	Di-Ras1|Gbts1|RIG	DIRAS family, GTP-binding RAS-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-131106169-3	chr2	131106078	131106278	+	991.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19413.0	NM_011426	20612.0	Mm.1374	NM_011426	ENSMUSG00000027322	Siglec1	Cd169|Siglec-1|Sn	sialic acid binding Ig-like lectin 1, sialoadhesin	protein-coding	2.95168553050329	3.09478055452443	2.29950361698675	3.72486774125259	4.26011607479351	4.18347282877269	4.36519804598907	4.14796154587921	1.63158689384495	0.00185090251130706	0.031574116109946
Merged-chr5-52113065-2	chr5	52112965	52113165	+	614.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	22952.0	NR_105845	102466648.0		NR_105845	ENSMUSG00000098726	Mir6417	Gm27334|mmu-mir-6417	microRNA 6417	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-129333983-4	chr6	129333887	129334087	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2206.0	NM_199034	381816.0	Mm.46114	NM_199034	ENSMUSG00000047720	4922502D21Rik	Clec2m|Gm1074|SPATA78	RIKEN cDNA 4922502D21 gene	protein-coding	3.16199835012179	4.2877022118521	4.15089492863128	4.20562718856879	3.45869663636137	4.12051563291484	4.82806131674466	4.32618096964865	0.340822651865742	0.485100854897471	0.931753689758342
Merged-chr10-98684328-4	chr10	98684249	98684449	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-230293.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-75189569-3	chr14	75189448	75189648	+	828.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008879, intron 2 of 16)	L1MA8|LINE|L1	-52739.0	NM_019775	56373.0	Mm.24242	NM_019775	ENSMUSG00000021999	Cpb2	1110032P04Rik|4930405E17Rik|AI255929|CPR|Cpu|TAFI	carboxypeptidase B2 (plasma)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-99338340-2	chr5	99338240	99338440	+	958.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 3 of 3)	ORR1A2|LTR|ERVL-MaLR	-85413.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-152733828-2	chr2	152733728	152733928	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2423.0	NM_010495	15901.0	Mm.444	NM_010495	ENSMUSG00000042745	Id1	AI323524|D2Wsu140e|Idb1|bHLHb24	inhibitor of DNA binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4125377-2	chr19	4125277	4125477	+	748.833313	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025889)	promoter-TSS (NM_025889)	481.0	NM_016666	11632.0	Mm.10433	NM_016666	ENSMUSG00000024847	Aip	AA408703|AW476050|Ara9|D19Bwg1412e|Fkbp16|Xap2	aryl-hydrocarbon receptor-interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-139042168-4	chr3	139042068	139042268	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356388, intron 2 of 13)	MTEb|LTR|ERVL-MaLR	33033.0	NM_145544	229877.0	Mm.28893	NM_145544	ENSMUSG00000028149	Rap1gds1	BC011279|GDS1	RAP1, GTP-GDP dissociation stimulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-104400887-4	chr7	104400769	104400969	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42223.0	NM_175648	244183.0	Mm.347647	NM_175648	ENSMUSG00000052749	Trim30b	A530023O14Rik|Trim30-1	tripartite motif-containing 30B	protein-coding	4.11290682579904	3.68734427242994	4.85488622345745	2.86035223135125	4.58847663460153	3.89967525145297	5.02286707665952	3.94538680501268	0.49729238094497	0.338240472902037	0.838472973941867
Merged-chr6-83629717-2	chr6	83629617	83629817	+	737.916626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	26399.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-105967816-3	chr11	105967719	105967919	+	723.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207624)	promoter-TSS (NM_207624)	-126.0	NM_001281819	11421.0	Mm.754	NM_009598	ENSMUSG00000020681	Ace	AW208573|CD143	angiotensin I converting enzyme (peptidyl-dipeptidase A) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-118927309-1	chr2	118927209	118927409	+	588.0	f1_balb.idr	exon (NM_028117, exon 1 of 1)	exon (NM_028117, exon 1 of 1)	812.0	NM_028117	72136.0	Mm.486238	NM_028117	ENSMUSG00000074916	Chst14	2600016L03Rik|D4ST-1|D4st1	carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-42227470-1	chr6	42227370	42227570	+	555.0	f0_balb.idr	Intergenic	Intergenic	12142.0	NM_001001453	387515.0	Mm.377922	NM_001001453	ENSMUSG00000051917	Tas2r144	Tas2r40|Tas2r44|mt2r33	taste receptor, type 2, member 144	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131153159-4	chr1	131153048	131153248	+	965.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001136070)	promoter-TSS (NM_001136070)	-59.0	NM_001136070	16865.0	Mm.276294	NM_010709	ENSMUSG00000026427	Eif2d	D1Ertd5e|Lgtn	eukaryotic translation initiation factor 2D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-92814725-2	chr16	92814625	92814825	+	649.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111022, intron 2 of 6)	intron (NM_001111022, intron 2 of 6)	11349.0	NM_001111021	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-49046512-4	chr7	49046431	49046631	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111016, intron 2 of 38)	intron (NM_001111016, intron 2 of 38)	87458.0	NM_001111016	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-105726590-4	chr7	105726494	105726694	+	884.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	9990.0	NM_025897	101867.0	Mm.231400	NM_025897	ENSMUSG00000030888	Rrp8	1500003O22Rik|2900001K19Rik|AW538116	ribosomal RNA processing 8, methyltransferase, homolog (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-116168520-2	chr4	116168420	116168620	+	559.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133681)	promoter-TSS (NM_133681)	-922.0	NM_133681	66805.0	Mm.45994	NM_133681	ENSMUSG00000028699	Tspan1	9030418M05Rik	tetraspanin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-45969247-2	chr16	45969147	45969347	+	638.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_152226, exon 3 of 3)	non-coding (NR_152226, exon 3 of 3)	23641.0	NR_152227	100503378.0	Mm.387133	NR_152226	ENSMUSG00000085826	Gm15638	Gm41457	predicted gene 15638	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117322139-4	chr8	117322001	117322201	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	-27069.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-24952356-4	chr12	24952169	24952369	+	781.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026037, intron 9 of 12)	intron (NM_026037, intron 9 of 12)	-22663.0	NM_001081378	77480.0	Mm.250641	NM_001081378	ENSMUSG00000036333	Kidins220	3110039L19Rik|AI194387|AI316525|C330002I19Rik|mKIAA1250	kinase D-interacting substrate 220	protein-coding	2.4032605647708	4.34203269703004	2.80423324531032	4.0466846408166	2.71277166810257	3.72579548288254	3.60111653719587	4.56650914196372	0.254538871933865	0.696319706066728	0.997923870727665
Merged-chr2-160700494-3	chr2	160700373	160700573	+	813.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009408, intron 9 of 20)	intron (NM_009408, intron 9 of 20)	-30837.0	NM_021280	18803.0	Mm.44463	NM_021280	ENSMUSG00000016933	Plcg1	AI894140|Cded|Plc-1|Plc-gamma1|Plcg-1	phospholipase C, gamma 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-97572638-3	chr9	97572523	97572723	+	942.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022319, intron 4 of 17)	intron (NM_022319, intron 4 of 17)	-202665.0	NM_030219	78911.0	Mm.108347	NM_030219	ENSMUSG00000032451	Trim42	4930486B16Rik	tripartite motif-containing 42	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70486742-2	chr11	70486642	70486842	+	783.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18532.0	NM_029360	75604.0	Mm.24400	NM_029360	ENSMUSG00000018919	Tm4sf5	2010003F10Rik|AI323987	transmembrane 4 superfamily member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-86172365-2	chr15	86172265	86172465	+	937.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145475, intron 1 of 12)	intron (NM_145475, intron 1 of 12)	-13363.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71869722-2	chr17	71869653	71869853	+	702.083374	f0_balb.idr|f1_balb.idr	exon (NM_007439, exon 29 of 29)	exon (NM_007439, exon 29 of 29)	87806.0	NM_030179	78785.0	Mm.196382	NM_030179	ENSMUSG00000024059	Clip4	1700024K14Rik|1700074B05Rik|4833417L20Rik|5830409B12Rik|Rsnl2	CAP-GLY domain containing linker protein family, member 4	protein-coding	2.0979306219153	1.13075922695145	1.34600310568684	1.65973563213745	2.40384503226973	1.13607770015837	2.10934110554607	2.23093580406224	1.19634338047316	0.291805432549862	0.796128548904676
Merged-chr19-57643112-1	chr19	57643012	57643212	+	621.0	f0_balb.idr	intron (NM_181415, intron 5 of 28)	intron (NM_181415, intron 5 of 28)	32078.0	NM_181415	226255.0	Mm.245340	NM_181415	ENSMUSG00000054843	Atrnl1	AI504415|AW555641|Alp|Atrnl|Atrnlp	attractin like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-31199780-2	chr5	31199680	31199880	+	816.099976	f1_balb.idr|f1_c57bl6.idr	TTS (NM_153680)	TTS (NM_153680)	2262.0	NM_001177901	101023.0	Mm.45033	NM_175311	ENSMUSG00000043059	Zfp513	AW990386|D430028M17Rik|Znf513	zinc finger protein 513	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-92488358-2	chr2	92488258	92488458	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27840.0	NM_145832	228368.0	Mm.273990	NM_145832	ENSMUSG00000049922	Slc35c1	E430007K15Rik|fuct1	solute carrier family 35, member C1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59620107-4	chr15	59620028	59620228	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28526.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	3.23505075478566	3.17448194603609	3.26062354105967	4.18303802468967	2.73514052177076	2.27402101842202	2.5659615041199	3.74397309503829	-0.915136874091522	0.16814284879816	0.634244121156369
Merged-chr17-31512701-2	chr17	31512601	31512801	+	832.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021322)	promoter-TSS (NM_021322)	-214.0	NM_021322	57773.0	Mm.143771	NM_021322	ENSMUSG00000024037	Wdr4	AI415180|AI448349|D530049K22Rik|Wh	WD repeat domain 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-68387057-2	chr11	68386957	68387157	+	561.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008744)	promoter-TSS (NM_008744)	-231.0	NM_008744	18208.0	Mm.39095	NM_008744	ENSMUSG00000020902	Ntn1	AI561871|BC019633|Netrin-1	netrin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117148021-2	chr10	117147937	117148137	+	901.75	f0_balb.idr|f0_c57.idr	intron (NM_177798, intron 1 of 9)	CpG	437.0	NM_177798	327826.0	Mm.135965	NM_177798	ENSMUSG00000020170	Frs2	4732458E18|C330018A15Rik|Frs2alpha|SNT1	fibroblast growth factor receptor substrate 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-65013689-3	chr18	65013593	65013793	+	674.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114386, intron 2 of 30)	intron (NM_001114386, intron 2 of 30)	-9834.0	NM_031881	83814.0	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-84032781-4	chr6	84032699	84032899	+	858.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310152, intron 1 of 53)	RLTR19-int|LTR|ERVK	13413.0	NM_021469	26903.0	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-105992225-1	chr1	105992125	105992325	+	1000.0	f1_balb.idr	intron (NM_001122675, intron 1 of 12)	intron (NM_001122675, intron 1 of 12)	1819.0	NM_001122675	227449.0	Mm.210188	NM_001122675	ENSMUSG00000038866	Zcchc2	9930114B20Rik|AW212015	zinc finger, CCHC domain containing 2	protein-coding	-0.41735798647371	-0.758443704981462	-0.59567957344391	-0.763302686810303	-0.409502964744401	-0.757821638724655	-0.760588122372649	-0.762934872443245	-0.457714908147605	0.871696125182732	1
Merged-chr6-85346389-4	chr6	85346297	85346497	+	935.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003955, intron 3 of 5)	intron (NM_001003955, intron 3 of 5)	-10024.0	NR_030486	735267.0		NR_030486	ENSMUSG00000076012	Mir705	Mirn705|mmu-mir-705	microRNA 705	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-67945970-2	chr14	67945870	67946070	+	997.400024	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12398.0	NM_177780	68813.0	Mm.258155	NM_177780	ENSMUSG00000044447	Dock5	1110060D06Rik|AI666732|AI956923|BC016533|E130320D18|lr2|rlc	dedicator of cytokinesis 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-110742394-3	chr9	110742304	110742504	+	636.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001083936, exon 1 of 14)	5' UTR (NM_001083936, exon 1 of 14)	206.0	NM_001083936	19228.0	Mm.3542	NM_011199	ENSMUSG00000032492	Pth1r	PPR|Pthr|Pthr1	parathyroid hormone 1 receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125010185-4	chr6	125010059	125010259	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347452)	promoter-TSS (NM_001347452)	-222.0	NM_001347452	269800.0	Mm.108677	NM_175557	ENSMUSG00000038346	Zfp384	BB163993|C130073D16Rik|Ciz|NP|Nmp4	zinc finger protein 384	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-81198078-2	chr7	81197978	81198178	+	809.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15726.0	NM_008803	18584.0	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-63422838-4	chr17	63422745	63422945	+	999.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015794, intron 4 of 8)	intron (NM_015794, intron 4 of 8)	77735.0	NM_015794	50758.0	Mm.136366	NM_015794	ENSMUSG00000023965	Fbxl17	6330576B01Rik|AI452053|BB073797|C130023C01Rik|Fbx13|Fbxo13	F-box and leucine-rich repeat protein 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-59129232-2	chr12	59129132	59129332	+	864.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001165254)	promoter-TSS (NM_001165254)	-516.0	NM_146034	338320.0	Mm.213215	NM_146034	ENSMUSG00000021000	Mia2	Ctage5|D12Bwg0579e|Mea6|Mgea|Mgea6	melanoma inhibitory activity 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-5258903-2	chr16	5258803	5259003	+	806.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-2947.0	NM_027446	70511.0	Mm.45780	NM_027446	ENSMUSG00000022544	Eef2kmt	5730409G15Rik|Fam86|Fam86a|eEF2-KMT	eukaryotic elongation factor 2 lysine methyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-76225925-4	chr16	76225827	76226027	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	103314.0	NR_040575	78215.0	Mm.243885	NR_040575		4930578N18Rik	-	RIKEN cDNA 4930578N18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65226072-2	chr9	65225972	65226172	+	550.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_177460, exon 3 of 7)	exon (NM_177460, exon 3 of 7)	11382.0	NM_177460	214424.0	Mm.31129	NM_177460	ENSMUSG00000032392	Parp16	ARTD15|BC055447|C79952|PARP-16	poly (ADP-ribose) polymerase family, member 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-127137274-4	chr2	127137172	127137372	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3318.0	NM_144818	215387.0	Mm.29786	NM_144818	ENSMUSG00000034906	Ncaph	A730011O11Rik|Brrn1|CAP-H|HCAP-H|mCAP-H	non-SMC condensin I complex, subunit H	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-25903273-2	chr15	25903173	25903373	+	859.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001034851, intron 3 of 8)	intron (NM_001034851, intron 3 of 8)	-30279.0	NM_001277318	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-26493580-2	chr2	26493445	26493645	+	698.25	f0_balb.idr|f0_c57.idr	intron (NM_008714, intron 2 of 33)	intron (NM_008714, intron 2 of 33)	10277.0	NM_008714	18128.0	Mm.290610	NM_008714	ENSMUSG00000026923	Notch1	9930111A19Rik|Mis6|N1|Tan1|lin-12	notch 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75168206-4	chr11	75168078	75168278	+	977.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001098203)	promoter-TSS (NM_001098203)	-26.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-137679493-2	chr6	137679393	137679593	+	913.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30208.0	NM_007945	13860.0	Mm.235346	NM_007945	ENSMUSG00000015766	Eps8	AW261790	epidermal growth factor receptor pathway substrate 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-104228871-4	chr13	104228782	104228982	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021790)	promoter-TSS (NM_021790)	-38.0	NM_172807	238831.0	Mm.98910	NM_172807	ENSMUSG00000021713	Ppwd1	4632422M10Rik|A330090G21Rik	peptidylprolyl isomerase domain and WD repeat containing 1	protein-coding	5.94555338733452	6.12983703297545	6.64740925374647	5.88859948478808	5.69995918637306	6.39929546936702	5.64109292900104	5.31811051454415	-0.405969090923509	0.148063063539036	0.598403537954644
Merged-chr3-96026839-3	chr3	96026708	96026908	+	734.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013841, intron 13 of 14)	RMER6A|LTR|ERVK	-30969.0	NM_023320	67220.0	Mm.458147	NM_023320	ENSMUSG00000015745	Plekho1	2810052M02Rik|CKIP-1|Ckip1|JZA-20|Jza2	pleckstrin homology domain containing, family O member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150278007-1	chr4	150277907	150278107	+	836.0	f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-3909.0	NM_001085492	68703.0	Mm.291274	NM_001085492	ENSMUSG00000039852	Rere	1110033A15Rik|AI414665|ARG|ARP|ATN1L|AW742570|Atr2|DNB1|eye<m03Jus>|eyes3|mKIAA0458	arginine glutamic acid dipeptide (RE) repeats	protein-coding	0.559624384712616	1.85624481112842	0.380207825974647	1.69558063263409	0.349544636159761	0.399343239974438	0.640339543832086	0.369949544301711	-4.17032043008604	0.015755183866705	0.150262874429831
Merged-chr17-78419369-4	chr17	78419243	78419443	+	963.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1191.0	NM_001285940	225020.0	Mm.236835	NM_199448	ENSMUSG00000056121	Fez2	9030616F16|D17Ertd315e	fasciculation and elongation protein zeta 2 (zygin II)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128782834-2	chr2	128782733	128782933	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 14 of 18)	intron (NM_008587, intron 14 of 18)	-35470.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	-0.393695853632059	-0.751181653761304	-0.754251884853322	-0.756614066174729	-0.20124806483922	-0.750488270562737	-0.753575544849141	-0.756201818088136	0.759966263124917	0.800583933387673	1
Merged-chr4-102518017-3	chr4	102517936	102518136	+	942.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019840, intron 5 of 14)	intron (NM_019840, intron 5 of 14)	-52024.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117958419-4	chr11	117958345	117958545	+	979.775024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10921.0	NM_007707	12702.0	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-19630269-4	chr3	19630165	19630365	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14195.0	NM_001081281	381485.0	Mm.35419	NM_001081281	ENSMUSG00000060913	Trim55	D830041C10Rik|Murf2|Rnf29	tripartite motif-containing 55	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131963041-7	chr1	131962943	131963143	+	984.68573	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001177628, exon 1 of 5)	5' UTR (NM_001177628, exon 1 of 5)	128.0	NM_001177628	212980.0	Mm.200307	NM_145977	ENSMUSG00000026435	Slc45a3	2210413P12Rik|AU023994|AU043764|IPCA-6|PRST|Pcanap6	solute carrier family 45, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-41240802-2	chr8	41240702	41240902	+	844.2999880000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_023662, intron 1 of 37)	intron (NM_023662, intron 1 of 37)	1043.0	NM_023662	18536.0	Mm.117896	NM_023662	ENSMUSG00000031592	Pcm1	2600002H09Rik|9430077F19Rik|C030044G17Rik	pericentriolar material 1	protein-coding	-0.119914766473411	-0.476291058701473	-0.480027738234522	-0.482904784848028	-0.34352270808114	0.138267052152006	-0.479204326864036	-0.482402544599802	1.18530131180853	0.648246020125214	1
Merged-chr8-47685160-2	chr8	47685060	47685260	+	569.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-10001.0	NM_023503	69260.0	Mm.430733	NM_023503	ENSMUSG00000063049	Ing2	2810011M06Rik|Ing1l|Ing2b|P33ING2	inhibitor of growth family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-62892701-4	chr14	62892610	62892810	+	977.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175546, intron 2 of 11)	intron (NM_175546, intron 2 of 11)	27168.0	NR_105860	102465311.0		NR_105860	ENSMUSG00000098858	Mir6541	Gm27311|mmu-mir-6541	microRNA 6541	ncRNA	1.89999533078616	2.4879577073002	1.14552144596658	1.46136877454778	1.52131753644983	1.19129853490549	1.15390168686754	0.891060396247303	-2.09002731329005	0.0853619255779297	0.448673649131425
Merged-chr6-125596386-3	chr6	125596299	125596499	+	823.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011708, intron 10 of 51)	CT-rich|Low_complexity|Low_complexity	43451.0	NM_011708	22371.0	Mm.22339	NM_011708	ENSMUSG00000001930	Vwf	6820430P06Rik|AI551257|B130011O06Rik|C630030D09|F8VWF|VWD	Von Willebrand factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-52559074-4	chr18	52558991	52559191	+	830.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29224.0	NM_001286182	16948.0	Mm.172	NM_010728	ENSMUSG00000024529	Lox	AI893619|TSC-160|rrg	lysyl oxidase	protein-coding	0.719964375317132	0.376525560295509	1.02033418145455	0.523611403864054	0.72853290831067	0.377999789002101	0.54572209333968	0.663464836804818	-0.6246721385544	0.708372877490033	1
Merged-chr3-129944023-3	chr3	129943932	129944132	+	783.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025779, intron 1 of 7)	intron (NM_025779, intron 1 of 7)	26174.0	NM_025779	66815.0	Mm.31056	NM_025779	ENSMUSG00000027994	Mcub	9030408N13Rik|Ccdc109b	mitochondrial calcium uniporter dominant negative beta subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-137365837-4	chr4	137365747	137365947	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8088.0	NM_001243769	12540.0	Mm.1022	NM_009861	ENSMUSG00000006699	Cdc42	AI747189|AU018915	cell division cycle 42	protein-coding	2.21728728748893	2.92362781823995	3.36118240644762	2.94279325919386	3.57919982920969	3.5008930582066	2.59075342123206	1.50371051016381	0.198739535293201	0.802171921562478	0.998431161219273
Merged-chr6-83708299-4	chr6	83708203	83708403	+	837.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_075094, intron 1 of 2)	intron (NR_075094, intron 1 of 2)	2522.0	NR_075094	574519.0	Mm.487605	NR_002871	ENSMUSG00000085794	Vax2os	Vas2os|Vax2os1|Vax2os2	ventral anterior homeobox 2, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128488129-2	chr10	128488029	128488229	+	993.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001114097, exon 27 of 28)	exon (NM_001114097, exon 27 of 28)	4880.0	NM_001317220	17904.0	Mm.337074	NM_010860	ENSMUSG00000090841	Myl6	ESMLC|LC17|LC17-GI|MLC-3|MLC1SM|Myln	myosin, light polypeptide 6, alkali, smooth muscle and non-muscle	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180265076-4	chr1	180264974	180265174	+	997.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8774.0	NM_001128605	19165.0	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-127362619-4	chr2	127362500	127362700	+	981.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009633)	promoter-TSS (NM_009633)	-686.0	NM_009633	11552.0	Mm.347390	NM_009633	ENSMUSG00000058620	Adra2b	Adra-2b|[a]2B|a2b-AR|alpha2-C2|alpha2B	adrenergic receptor, alpha 2b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-32392957-1	chr4	32392857	32393057	+	909.0	f0_balb.idr	Intergenic	Lx9|LINE|L1	-24478.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78334633-4	chr15	78334636	78334836	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358854, intron 2 of 14)	intron (NM_001358854, intron 2 of 14)	8746.0	NM_007780	12983.0	Mm.235324	NM_007780	ENSMUSG00000071713	Csf2rb	AI848964|AIC2B|Bc|CDw131|Csf2rb1|Csfgmrb|Il3r|Il3rb|Il3rb1|Il5rb	colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102701604-2	chr12	102701504	102701704	+	640.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172584, intron 1 of 9)	intron (NM_172584, intron 1 of 9)	3265.0	NM_172584	217837.0	Mm.482192	NM_172584	ENSMUSG00000057963	Itpk1	BC031182	inositol 1,3,4-triphosphate 5/6 kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90558280-2	chr2	90558180	90558380	+	579.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	22367.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	1.5025467626953	2.20116059695509	1.27119767986139	2.14446793071786	0.986200597590027	2.11187841359109	1.03622531268199	1.96605792260821	-0.57430051883173	0.632686982906797	0.982230082053879
Merged-chr6-31201386-1	chr6	31201286	31201486	+	540.0	f1_c57bl6.idr	intron (NR_110469, intron 1 of 3)	L1MC4|LINE|L1	17088.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-23495604-3	chr1	23495520	23495720	+	879.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M8|LINE|L1	-78967.0	NR_151529	105243890.0	Mm.383635	NR_151529		Gm28822	-	predicted gene 28822	ncRNA	-1.84303373260285	-1.81303463126392	-1.82210660711932	-1.82955859819738	-1.84092785115721	-1.81106869625141	-1.8200529106377	-1.54273750312762	1.50114612804783	0.670102668014672	1
Merged-chr12-76615463-4	chr12	76615372	76615572	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013675, intron 15 of 35)	ORR1D2-int|LTR|ERVL-MaLR	-67547.0	NR_046044	100504549.0	Mm.440349	NR_046044	ENSMUSG00000112388	AI463170	-	expressed sequence AI463170	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122548825-4	chr5	122548715	122548915	+	858.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46590.0	NR_027838	11938.0	Mm.227583	NM_009722	ENSMUSG00000029467	Atp2a2	9530097L16Rik|D5Wsu150e|SERCA2|SERCA2B|Serca2a|mKIAA4195	ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-32225336-3	chr19	32225230	32225430	+	952.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 4 of 9)	intron (NM_144792, intron 4 of 9)	-14317.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-53573242-4	chr6	53573114	53573314	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172728)	promoter-TSS (NM_172728)	-160.0	NM_172728	231991.0	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-170173676-2	chr1	170173576	170173776	+	783.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133806, intron 1 of 10)	intron (NM_133806, intron 1 of 10)	1288.0	NM_133806	107652.0	Mm.27969	NM_133806	ENSMUSG00000026670	Uap1	AA420407|AA437972|AGX-1|AGX-2|AGX1|AgX|ESTM38|SPAG2	UDP-N-acetylglucosamine pyrophosphorylase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-76534963-1	chr12	76534863	76535063	+	939.0	f0_balb.idr	intron (NM_153804, intron 1 of 18)	intron (NM_153804, intron 1 of 18)	1403.0	NM_153804	263406.0	Mm.291854	NM_153804	ENSMUSG00000052609	Plekhg3	BC030417	pleckstrin homology domain containing, family G (with RhoGef domain) member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-86879379-3	chr10	86879278	86879478	+	849.861084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138673, intron 44 of 68)	intron (NM_138673, intron 44 of 68)	100373.0	NM_175331	103466.0	Mm.200446	NM_175331	ENSMUSG00000054027	Nt5dc3	AU040402|AW540062|C630002B14Rik|TU12B1-TY	5'-nucleotidase domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-53224397-3	chr18	53224285	53224485	+	623.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21277.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-111628502-2	chr8	111628438	111628638	+	621.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_027570, exon 6 of 11)	exon (NM_027570, exon 6 of 11)	1784.0	NM_027570	52815.0	Mm.27589	NM_027570	ENSMUSG00000031958	Ldhd	4733401P21Rik|D8Bwg1320e	lactate dehydrogenase D	protein-coding	-0.719035798507251	-1.16449571712793	-1.17514211765492	-1.1838873880354	-1.18865077678778	-1.16218859772121	-1.00521552208443	-1.18232198881852	-1.39506443050583	0.674342714648981	1
Merged-chr5-140406811-2	chr5	140406711	140406911	+	579.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12494.0	NM_133916	27979.0	Mm.21671	NM_133916	ENSMUSG00000056076	Eif3b	AL033316|AL033334|AL033369|AW208965|D5Wsu45e|EIF3-ETA|EIF3-P110|EIF3-P116|Eif3s9|PRT1	eukaryotic translation initiation factor 3, subunit B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-80738393-2	chr15	80738293	80738493	+	588.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144812, intron 1 of 24)	intron (NM_144812, intron 1 of 24)	27080.0	NM_144812	213988.0	Mm.131328	NM_144812	ENSMUSG00000047888	Tnrc6b	2700090M07Rik|A730065C02Rik|AI848765|D230019K20Rik	trinucleotide repeat containing 6b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139686878-1	chr5	139686778	139686978	+	837.0	f1_c57bl6.idr	Intergenic	Intergenic	49455.0	NM_174850	231830.0	Mm.240510	NM_174850	ENSMUSG00000036718	Micall2	A930021H16Rik|JRAB|MICAL-L2|mFLJ00139	MICAL-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-52366517-3	chr1	52366422	52366622	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-133290.0	NM_001113383	14660.0	Mm.398608	NM_001081081	ENSMUSG00000026103	Gls	6330442B14|AI314027|B230365M23Rik	glutaminase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-45746638-3	chr19	45746577	45746777	+	648.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	2886.0	NM_008723	18150.0	Mm.1406	NM_008723	ENSMUSG00000056209	Npm3	Nub1	nucleoplasmin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-145281064-2	chr5	145280964	145281164	+	811.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2279.0	NM_001081431	666311.0	Mm.260773	NM_001081431	ENSMUSG00000070420	Zscan25	EG666311|Zfp498	zinc finger and SCAN domain containing 25	protein-coding	0.789361624542071	0.0701613379353609	1.19040003868902	0.0555597357216092	0.222212879728983	0.0719946908375267	0.06377991678581	0.0566831545717765	-3.53718161940712	0.091486355929018	1
Merged-chr5-121220190-4	chr5	121220082	121220282	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181421)	promoter-TSS (NM_181421)	-37.0	NM_181421	269700.0	Mm.184589	NM_181421	ENSMUSG00000042744	Hectd4	A130010L24|AU042671|BC019639|EG545802|Gm15800|mKIAA0614	HECT domain E3 ubiquitin protein ligase 4	protein-coding	5.04671869472388	4.55598475362301	4.88233579795824	4.71825795443493	5.02827113675438	3.83946031161977	5.58880538629967	4.1287014049999	0.0184097976172228	0.965043131276982	0.998431161219273
Merged-chr3-63975429-2	chr3	63975330	63975530	+	583.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033300)	promoter-TSS (NM_001033300)	-713.0	NM_001033300	229363.0	Mm.331051	NM_001033300	ENSMUSG00000027823	Gmps	670032|AA591640|AI047208|Gm9479	guanine monophosphate synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-94952341-2	chr9	94952274	94952474	+	605.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177909, intron 8 of 15)	Lx8b|LINE|L1	200545.0	NR_106116	102465763.0		NR_106116	ENSMUSG00000098251	Mir7656	Gm27614|mmu-mir-7656	microRNA 7656	ncRNA	0.916228801325767	0.990657992798052	2.17716567759553	1.18295299140242	1.71620418111094	1.47974732378874	2.51132698305768	1.68889775203817	1.33737453375473	0.271403193411873	0.774939437067027
Merged-chr16-50686834-2	chr16	50686734	50686934	+	559.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40298.0	NR_105782	102466634.0		NR_105782	ENSMUSG00000098482	Mir6363	Gm28026|mmu-mir-6363	microRNA 6363	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64795938-4	chr5	64795854	64796054	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7569.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-93127090-3	chr6	93126975	93127175	+	847.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	186493.0	NR_015530	330385.0	Mm.483472	NR_015530	ENSMUSG00000097462	9530026P05Rik	B430306B02	RIKEN cDNA 9530026P05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36691585-4	chr18	36691502	36691702	+	999.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172831, intron 5 of 12)	intron (NM_172831, intron 5 of 12)	4323.0	NM_172831	240216.0	Mm.252323	NM_172831	ENSMUSG00000044719	E230025N22Rik	EG240216	Riken cDNA E230025N22 gene	protein-coding	2.85938879370146	2.82337243902745	3.77339489696077	1.67309848148449	2.52098068257603	3.0590132897993	1.45215910914479	2.76327357620545	-0.751921788201897	0.38121445649801	0.872878240496996
Merged-chr7-128208350-3	chr7	128208208	128208408	+	741.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1942.0	NM_009943	12862.0	Mm.43824	NM_009943	ENSMUSG00000030785	Cox6a2	CoxVIaH|VIaH	cytochrome c oxidase subunit VIa polypeptide 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101247766-1	chr15	101247666	101247866	+	1000.0	f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-19080.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	1.60480473631965	1.22854789152999	1.33202771652798	1.7873419126452	1.1060516459856	1.23781936908121	0.814892940856793	0.803210408447972	-2.22364814663218	0.102114751935105	0.496960300318031
Merged-chr9-118908423-3	chr9	118908325	118908525	+	850.2777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18111.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	1.90454856985799	1.81692301746695	2.0738659219074	1.0574547982271	1.37823167916092	1.52541214570079	1.47911700261293	1.82750748850716	-0.670669630665339	0.550512092132502	0.958882219733107
Merged-chr1-170478385-1	chr1	170478285	170478485	+	568.0	f0_balb.idr	intron (NM_001109985, intron 2 of 9)	intron (NM_001109985, intron 2 of 9)	78725.0	NM_027528	70729.0	Mm.409310	NM_027528	ENSMUSG00000038473	Nos1ap	6330408P19Rik|Capon	nitric oxide synthase 1 (neuronal) adaptor protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-35573998-4	chr12	35573910	35574110	+	953.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39021.0	NM_001314027	11622.0	Mm.341377	NM_013464	ENSMUSG00000019256	Ahr	Ah|Ahh|Ahre|In|bHLHe76	aryl-hydrocarbon receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-122649643-4	chr14	122649517	122649717	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153443, intron 8 of 24)	intron (NR_153443, intron 8 of 24)	115289.0	NM_144844	110821.0	Mm.23876	NM_144844	ENSMUSG00000041650	Pcca	C79630	propionyl-Coenzyme A carboxylase, alpha polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102418353-2	chr12	102418253	102418453	+	618.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011175, intron 2 of 13)	RLTR25B|LTR|ERVK	21460.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-98955355-3	chr9	98955265	98955465	+	855.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_012020)	promoter-TSS (NM_012020)	-55.0	NR_003248	768252.0	Mm.129645	NR_003248	ENSMUSG00000097072	Foxl2os	-	forkhead box L2, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-131869516-4	chr3	131869410	131869610	+	698.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-215782.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-13513514-4	chr10	13513419	13513619	+	954.2708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025799, intron 6 of 6)	intron (NM_025799, intron 6 of 6)	12491.0	NM_025799	66848.0	Mm.26625	NM_025799	ENSMUSG00000019810	Fuca2	0610025O11Rik|5530401P20Rik	fucosidase, alpha-L- 2, plasma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-63888760-2	chr15	63888660	63888860	+	993.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_108053, intron 6 of 6)	intron (NR_108053, intron 6 of 6)	8053.0	NR_108053	665769.0	Mm.290602	NR_108053	ENSMUSG00000093867	Gsdmcl2	4921501E01Rik|4930453O09Rik|Gm7779	gasdermin C-like 2	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78245657-5	chr15	78245520	78245720	+	830.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008677, intron 1 of 9)	intron (NM_008677, intron 1 of 9)	809.0	NM_008677	17972.0	Mm.2068	NM_008677	ENSMUSG00000071715	Ncf4	AI451400|p40phox	neutrophil cytosolic factor 4	protein-coding	2.47300541670221	2.56469787461758	2.34477887566051	1.30609091057381	2.7474339367509	1.39248433934414	2.49379179985923	3.52976838991863	0.990147336467205	0.295486271926671	0.7986401962885
Merged-chr5-149243169-1	chr5	149243069	149243269	+	546.0	f1_c57bl6.idr	Intergenic	Intergenic	-21835.0	NM_001308462	11690.0	Mm.19844	NM_009663	ENSMUSG00000060063	Alox5ap	Flap	arachidonate 5-lipoxygenase activating protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-113796501-2	chr5	113796401	113796601	+	834.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146162, intron 1 of 1)	intron (NM_146162, intron 1 of 1)	3851.0	NM_146162	231633.0	Mm.41681	NM_146162	ENSMUSG00000054675	Tmem119	AW208946|BC025600|obif	transmembrane protein 119	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-34453843-2	chr15	34453697	34453897	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173421, intron 1 of 2)	intron (NM_173421, intron 1 of 2)	485.0	NM_173421	239368.0	Mm.211977	NM_173421	ENSMUSG00000044726	Erich5	-	glutamate rich 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-93310376-2	chr15	93310276	93310476	+	664.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_024189, intron 2 of 3)	MTC|LTR|ERVL-MaLR	26559.0	NR_028315	67057.0	Mm.4714	NM_024189	ENSMUSG00000022634	Yaf2	2810021M11Rik	YY1 associated factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-39895515-2	chr1	39895415	39895615	+	753.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16E1|LTR|ERVL	-5398.0	NM_001252202	26921.0	Mm.491139	NM_008696	ENSMUSG00000026074	Map4k4	9430080K19Rik|AU043147|AU045934|AW046177|HGK|Nik	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-145250713-2	chr4	145250613	145250813	+	833.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-3843.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-60765873-2	chr18	60765773	60765973	+	694.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-8723.0	NM_020600	20044.0	Mm.43778	NM_020600	ENSMUSG00000024608	Rps14	2600014J02Rik|AL023078	ribosomal protein S14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56132028-3	chr17	56131924	56132124	+	841.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001130456, intron 3 of 16)	intron (NM_001130456, intron 3 of 16)	1828.0	NM_013662	20359.0	Mm.8029	NM_013662	ENSMUSG00000001227	Sema6b	Sema|Seman|VIb|semaZ	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-32249910-4	chr4	32249834	32250034	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-167501.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	3.42071535521115	2.78084945463727	2.90790398516181	3.36932074078095	1.44838281497372	3.0323838531579	2.5762086498311	2.73554561721896	-1.07597176343962	0.153816507811176	0.608938779383575
Merged-chr11-88949649-1	chr11	88949549	88949749	+	607.0	f1_balb.idr	intron (NM_029023, intron 2 of 12)	B4A|SINE|B4	5793.0	NM_029023	74617.0	Mm.34126	NM_029023	ENSMUSG00000000278	Scpep1	2410018F01Rik|4833411K15Rik|AI957256|Risc	serine carboxypeptidase 1	protein-coding	0.404719880449574	0.429229131783464	0.421234455229136	0.969126076942949	0.908933699456459	0.431026841650772	0.903794999684474	1.16602555721902	1.68838571735583	0.351293885763643	1
Merged-chr16-44773857-4	chr16	44773762	44773962	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021325, intron 1 of 6)	intron (NM_021325, intron 1 of 6)	8126.0	NM_021325	57781.0	Mm.416152	NM_021325	ENSMUSG00000022667	Cd200r1	CD200R|Mox2r|OX2R	CD200 receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165874996-4	chr2	165874885	165875085	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252587, intron 2 of 11)	intron (NM_001252587, intron 2 of 11)	3452.0	NM_001291158	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	0.2964101967814	0.316019199089266	0.86624528947398	0.602247263426629	0.672910970233542	0.31746876878659	0.877343631491209	0.468368329065653	0.357035293066693	0.842885256912552	1
Merged-chr5-66015728-4	chr5	66015642	66015842	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001127382)	TTS (NM_001127382)	-11457.0	NR_027961	231253.0	Mm.436542	NM_177679	ENSMUSG00000054598	9130230L23Rik	-	RIKEN cDNA 9130230L23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-136028274-3	chr4	136028078	136028278	+	868.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6529.0	NM_013736	27224.0	Mm.27663	NM_013736	ENSMUSG00000028668	Eloa	110kDa|AA408125|Tceb3|Tceb3a	elongin A	protein-coding	2.05681424038458	1.30541455960511	2.58129369676988	2.40542487149282	1.94609956613077	1.31350315343851	2.49980846667317	3.25876217054373	0.618687241416974	0.537721029327231	0.953963493057627
Merged-chr14-54771183-4	chr14	54771066	54771266	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016972, intron 1 of 10)	intron (NM_016972, intron 1 of 10)	10720.0	NM_016972	50934.0	Mm.276831	NM_016972	ENSMUSG00000022180	Slc7a8	AA408822|LAT2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	protein-coding	4.33520869091857	4.36685497301103	4.57856939490035	4.83544631607832	3.38915891244453	3.90619481627054	4.31606069292705	3.38136524354404	-0.996052575222585	0.0235796919244327	0.200929789566295
Merged-chr7-36696671-3	chr7	36696665	36696865	+	855.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1353.0	NM_172298	243931.0	Mm.44141	NM_172298	ENSMUSG00000021217	Tshz3	A630038G13Rik|Tsh3|Zfp537|mKIAA1474|teashirt3	teashirt zinc finger family member 3	protein-coding	-0.865326703316383	-0.849971874135937	0.280665258210813	-0.858864759381203	-0.86435674098481	-0.848731039658829	-0.853951331253819	-0.858192605091486	-3.66751939073779	0.204629335831286	1
Merged-chr12-111296559-2	chr12	111296459	111296659	+	672.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_183016, intron 30 of 36)	intron (NM_183016, intron 30 of 36)	25463.0	NM_033603	93835.0	Mm.197639	NM_033603	ENSMUSG00000021278	Amn	-	amnionless	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-119400304-2	chr13	119400204	119400404	+	663.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001308506, intron 2 of 16)	intron (NM_001308506, intron 2 of 16)	8707.0	NM_008710	18115.0	Mm.132584	NM_008710	ENSMUSG00000116207	Nnt	4930423F13Rik|AI323702|BB168308	nicotinamide nucleotide transhydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-6591907-2	chr2	6591807	6592007	+	796.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110232, intron 10 of 15)	intron (NM_001110232, intron 10 of 15)	129755.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-84795827-2	chr2	84795727	84795927	+	653.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17D2|LTR|ERVK	-3001.0	NM_019949	56791.0	Mm.38261	NM_019949	ENSMUSG00000027078	Ube2l6	2810489I21Rik|RIG-B|UBCH8|Ubce8|Ubcm8	ubiquitin-conjugating enzyme E2L 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-53496408-4	chr8	53496296	53496496	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15306.0	NM_001205054	11593.0	Mm.334535	NM_001005847	ENSMUSG00000031521	Aga	AW060726	aspartylglucosaminidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19861192-2	chr7	19861092	19861292	+	640.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001033419, exon 1 of 6)	5' UTR (NM_001033419, exon 1 of 6)	107.0	NM_001033419	330483.0	Mm.260192	NM_001033419	ENSMUSG00000014686	Ceacam16	Gm769	carcinoembryonic antigen-related cell adhesion molecule 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123458265-2	chr5	123458165	123458365	+	890.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_133917)	TTS (NM_133917)	23836.0	NM_029594	76399.0	Mm.75049	NM_029594	ENSMUSG00000029437	Il31	1700013B14Rik	interleukin 31	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-60752347-2	chr13	60752247	60752447	+	559.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001285917, exon 23 of 27)	exon (NM_001285917, exon 23 of 27)	34017.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-35236708-2	chr5	35236608	35236808	+	585.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41858.0	NM_007418	11553.0	Mm.57205	NM_007418	ENSMUSG00000045318	Adra2c	Adra-2c|[a]2C|alpha2-C4|alpha2C	adrenergic receptor, alpha 2c	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27009736-2	chr17	27009636	27009836	+	709.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8299.0	NM_001251881	70772.0	Mm.440437	NM_027544	ENSMUSG00000048731	Ggnbp1	0610031G08Rik|mdf	gametogenetin binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70820411-5	chr8	70820376	70820576	+	819.599976	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008353, intron 15 of 15)	intron (NM_008353, intron 15 of 15)	12027.0	NM_008353	16161.0	Mm.731	NM_008353	ENSMUSG00000000791	Il12rb1	CD212|IL-12R[b]	interleukin 12 receptor, beta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-29814082-4	chr16	29813947	29814147	+	670.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	165077.0	NR_037689	328657.0	Mm.425982	NM_001033403		Gm1968	-	predicted gene 1968	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-134944849-2	chr4	134944749	134944949	+	557.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	13869.0	NM_026780	68592.0	Mm.29989	NM_026780	ENSMUSG00000028821	Syf2	1110018L13Rik|Cbpin|D4Bwg1551e|Gcipip|Ntc31|mp29|p29	SYF2 homolog, RNA splicing factor (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-121364096-2	chr10	121363996	121364196	+	639.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029364)	promoter-TSS (NM_029364)	-994.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46531837-1	chr19	46531737	46531937	+	557.0	f0_balb.idr	intron (NM_019718, intron 5 of 5)	intron (NM_019718, intron 5 of 5)	30189.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	1.04334725053044	1.71989348216317	0.738765557746886	0.727275535248437	1.05243036192482	1.62468788357884	0.74201890079209	1.77879859126269	0.858404739146014	0.555227142177581	0.959914380895535
Merged-chr11-97701742-3	chr11	97701673	97701873	+	834.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1276.0	NM_009545	22658.0	Mm.2418	NM_009545	ENSMUSG00000018537	Pcgf2	Mel18|Rnf110|Zfp144|mel-18	polycomb group ring finger 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-81783160-2	chr3	81783074	81783274	+	551.5	f0_balb.idr|f1_balb.idr	Intergenic	LTR41B|LTR|ERVL	-18851.0	NR_138586	320566.0	Mm.208417	NR_138586	ENSMUSG00000103695	A830029E22Rik	-	RIKEN cDNA A830029E22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-25970278-3	chr8	25970246	25970446	+	721.799988	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029884, intron 4 of 17)	RSINE1|SINE|B4	6398.0	NM_029884	52120.0	Mm.28326	NM_029884	ENSMUSG00000037260	Hgsnat	9430010M12Rik|AW208455|D8Ertd354e|Tmem76	heparan-alpha-glucosaminide N-acetyltransferase	protein-coding	1.47511373113264	0.900960850251555	1.47549866144812	1.68540652617843	1.70342885106041	0.90532987069324	2.37200255653027	0.86829310388834	0.677735369200537	0.610881139995397	0.975334764473647
Merged-chr4-95210486-2	chr4	95210367	95210567	+	581.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-158245.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47139898-3	chr17	47139753	47139953	+	964.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1089.0	NM_001097623	224829.0	Mm.260989	NM_172622		Trerf1	9430096I18Rik|AI429294|B830015H24|RAPA|Trep-132|Trep132	transcriptional regulating factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-128462606-2	chr7	128462506	128462706	+	824.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347641)	promoter-TSS (NM_001347641)	-933.0	NM_001347640	21843.0	Mm.242072	NM_009383	ENSMUSG00000030846	Tial1	5330433G13Rik|AL033329|TIAR|mTIAR	Tia1 cytotoxic granule-associated RNA binding protein-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-9893318-4	chr1	9893218	9893418	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133220, intron 17 of 17)	intron (NM_133220, intron 17 of 17)	-15320.0	NM_177722	240697.0	Mm.259800	NM_177722	ENSMUSG00000046101	Mcmdc2	6030422M02Rik	minichromosome maintenance domain containing 2	protein-coding	5.64729245141762	5.83244244146254	5.28498660223494	5.24976026666633	6.18904271414953	5.76043340655916	6.25080413604149	6.13539672701355	0.642741767105141	0.0114047652276168	0.119328558364389
Merged-chr11-114987513-1	chr11	114987413	114987613	+	706.75	f0_c57.idr	exon (NM_145437, exon 2 of 4)	exon (NM_145437, exon 2 of 4)	2373.0	NM_145437	217305.0	Mm.275986	NM_145437	ENSMUSG00000034641	Cd300ld	4732429D16Rik|CLM5|Cd300ld1|LMIR4|MAIR-IV|clm-5	CD300 molecule like family member d	protein-coding	3.90541328190927	2.78847275827787	3.80829708527326	4.05041080633621	3.4100253937693	2.63053000778346	4.08161674804632	3.90863717138874	-0.154233549272461	0.788209532176307	0.998431161219273
Merged-chr10-37135764-1	chr10	37135664	37135864	+	550.0	f1_balb.idr	3' UTR (NM_008538, exon 2 of 2)	3' UTR (NM_008538, exon 2 of 2)	3162.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-72184146-4	chr5	72184045	72184245	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15956.0	NM_001356614	27784.0	Mm.44223	NM_178599	ENSMUSG00000029213	Commd8	C77770|D5Buc26e	COMM domain containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-81850906-3	chr7	81850814	81851014	+	734.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-8087.0	NR_111910	107769.0	Mm.221412	NM_145375	ENSMUSG00000038623	Tm6sf1	AI428514|BC023123|C630016D09Rik	transmembrane 6 superfamily member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-31117361-2	chr6	31117261	31117461	+	998.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NR_110471, intron 3 of 3)	intron (NR_110471, intron 3 of 3)	-54268.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-81454710-4	chr16	81454613	81454813	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113208, intron 5 of 17)	intron (NM_001113208, intron 5 of 17)	254016.0	NM_010954	17968.0	Mm.433941	NM_010954	ENSMUSG00000022762	Ncam2	Ncam-2|Ocam|RNCAM	neural cell adhesion molecule 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-23531045-4	chr13	23530932	23531132	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153173)	promoter-TSS (NM_153173)	-12.0	NM_153173	69386.0	Mm.158272	NM_153173	ENSMUSG00000060981	Hist1h4h	1700024H08Rik	histone cluster 1, H4h	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-49982681-4	chr18	49982584	49982784	+	999.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177759, intron 1 of 1)	intron (NM_001177759, intron 1 of 1)	3257.0	NM_001177759	106869.0	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	1.89517551263071	3.33857398592609	2.67035357167997	2.59465313149608	2.58809748709781	3.19945574596925	3.09539610803147	2.60813203499878	0.33009465363046	0.653926404392064	0.987059758436968
Merged-chr10-128298421-4	chr10	128298314	128298514	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031252)	promoter-TSS (NM_031252)	-330.0	NM_031252	83430.0	Mm.125482	NM_031252	ENSMUSG00000025383	Il23a	IL-23|p19	interleukin 23, alpha subunit p19	protein-coding	4.91073500168218	5.22156425375189	5.13758343791831	4.53033145516297	5.06231988214551	4.37178528833886	5.13809111045442	4.9999156167687	-0.0465337738869724	0.891033812755005	0.998431161219273
Merged-chr8-115423242-4	chr8	115423141	115423341	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	283653.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-70478006-4	chr18	70477874	70478074	+	940.854126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289650, intron 5 of 8)	intron (NM_001289650, intron 5 of 8)	5308.0	NM_001289650	170461.0	Mm.83623	NM_029019	ENSMUSG00000079608	Stard6	1700011K09Rik|4833424I06Rik|4933429L05Rik|AI644424	StAR-related lipid transfer (START) domain containing 6	protein-coding	3.92805822773986	4.51542301815342	4.9856085757803	4.41090845036567	4.07524038145715	4.42806331490387	4.87115346577435	4.91966611884577	0.136337808405439	0.736747323418526	0.998431161219273
Merged-chr8-54562346-4	chr8	54562246	54562446	+	989.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029569, intron 1 of 6)	intron (NM_029569, intron 1 of 6)	12015.0	NM_029569	76294.0	Mm.33171	NM_029569	ENSMUSG00000031519	Asb5	1110018D09Rik	ankyrin repeat and SOCs box-containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-75905647-4	chr15	75905560	75905760	+	955.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029663, intron 2 of 9)	intron (NM_029663, intron 2 of 9)	3684.0	NM_001285433	66656.0	Mm.258927	NM_023240	ENSMUSG00000055762	Eef1d	EF-1-delta	eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-99582260-4	chr5	99582183	99582383	+	892.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 1 of 3)	intron (NR_030692, intron 1 of 3)	146777.0	NR_030692	319818.0	Mm.295233	NR_030692	ENSMUSG00000089809	A930011G23Rik	-	RIKEN cDNA A930011G23 gene	ncRNA	3.65598330582129	2.71448181622606	2.09718276942717	3.17039575133737	3.77202478767629	2.7356122941336	1.87913560658689	3.5389972377818	0.233285830784027	0.757889569632745	0.998431161219273
Merged-chr1-106425366-2	chr1	106425336	106425536	+	707.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	121195.0	NR_106164	102466254.0		NR_106164	ENSMUSG00000098344	Mir3473f	Gm27846|mmu-mir-3473f	microRNA 3473f	ncRNA	-0.270765480820702	0.643580328506935	-0.258598011988899	-0.263147892419733	-0.269627095445438	-0.2514288768244	0.382529454735034	-0.262350976157938	-0.712806651533875	0.776671000273351	1
Merged-chr5-125382213-2	chr5	125382169	125382369	+	729.25	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	7748.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-69462136-4	chr12	69462047	69462247	+	942.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13403.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-48878760-4	chr13	48878631	48878831	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001033268)	TTS (NM_001033268)	-7846.0	NM_011078	18676.0	Mm.486213	NM_011078	ENSMUSG00000038025	Phf2	GRC5	PHD finger protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133729625-3	chr4	133729480	133729680	+	924.3388669999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080819, intron 1 of 19)	intron (NM_001080819, intron 1 of 19)	-12472.0	NR_106086	102465707.0		NR_106086	ENSMUSG00000104566	Mir7227	mmu-mir-7227	microRNA 7227	ncRNA	1.96651470612544	1.19441776703673	2.33077991976372	1.84744434138742	1.98320467132259	1.19972413837765	2.34984212987477	1.85696587927819	0.0383976933168953	0.971938426703051	0.998431161219273
Merged-chr2-83994119-4	chr2	83994022	83994222	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52896.0	NM_027964	71861.0	Mm.116957	NM_027964	ENSMUSG00000034552	Zswim2	1700025P14Rik|4933437F18Rik|MEX	zinc finger SWIM-type containing 2	protein-coding	-1.26443160715111	-1.51269227652887	-1.52213727607237	-1.52989567991432	-1.54173241655551	-1.51064550572703	-1.37138617352608	-1.528506929336	-0.563662181339258	0.873093626595385	1
Merged-chr8-117500384-3	chr8	117500264	117500464	+	844.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172285, intron 1 of 32)	intron (NM_172285, intron 1 of 32)	2089.0	NM_172285	234779.0	Mm.192699	NM_172285	ENSMUSG00000034330	Plcg2	PLC-gamma-2|PLCgamma2|Plcg-2	phospholipase C, gamma 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-49186112-2	chr13	49186012	49186212	+	910.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1435.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-36701914-2	chr15	36701814	36702014	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	89018.0	NM_001253807	22631.0	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-80258275-2	chr15	80258171	80258371	+	853.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001287180)	TTS (NM_001287180)	3087.0	NM_009716	11911.0	Mm.641	NM_009716	ENSMUSG00000042406	Atf4	Atf-4|C/ATF|CREB2|TAXREB67	activating transcription factor 4	protein-coding	2.62036245571945	1.37460246302152	2.3306519879145	2.03347301053271	2.43209952296154	2.17574636590511	2.1056750989077	2.04348036827744	0.0386504891684413	0.966744671766453	0.998431161219273
Merged-chr9-118645057-1	chr9	118644957	118645157	+	652.0	f0_balb.idr	intron (NM_133721, intron 4 of 27)	intron (NM_133721, intron 4 of 27)	38348.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-63085246-2	chr14	63085146	63085346	+	893.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30173.0	NR_046019	72609.0	Mm.387101	NR_046019		2700070H01Rik	-	RIKEN cDNA 2700070H01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-34846214-4	chr8	34846129	34846329	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175091, intron 20 of 26)	intron (NM_175091, intron 20 of 26)	38619.0	NM_176933	319520.0	Mm.170276	NM_176933	ENSMUSG00000031530	Dusp4	2700078F24Rik|AI844617|BB104621|E130306H24Rik|MKP2	dual specificity phosphatase 4	protein-coding	5.20901998156055	4.80328154483074	6.04913133343509	5.49588284853923	5.11177011941129	5.02890304895495	5.1558701494201	5.21497959322883	-0.3895320658418	0.227076369103268	0.71997232966636
Merged-chr8-67917257-3	chr8	67917145	67917345	+	702.733337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177698, intron 3 of 14)	intron (NM_177698, intron 3 of 14)	-6299.0	NM_030263	234353.0	Mm.32525	NM_027626	ENSMUSG00000030465	Psd3	4931420C21Rik|AI661273|BC003498|D430018P08|EFA6D	pleckstrin and Sec7 domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85245203-2	chr12	85245103	85245303	+	606.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_105903)	TTS (NR_105903)	782.0	NR_105903	102466769.0		NR_105903	ENSMUSG00000098263	Mir6938	Gm27519|mmu-mir-6938	microRNA 6938	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-79102025-2	chr16	79101925	79102125	+	881.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	-10928.0	NM_178855	19146.0	Mm.5184	NM_008941	ENSMUSG00000022857	Tmprss15	Entk|Prss7	transmembrane protease, serine 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-22974889-5	chr8	22974789	22974989	+	653.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001277280)	promoter-TSS (NM_001277280)	53.0	NM_001277280	11733.0	Mm.334444	NM_031158	ENSMUSG00000031543	Ank1	Ank-1|nb|pale	ankyrin 1, erythroid	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-87819428-1	chr6	87819328	87819528	+	556.5	f1_balb.idr	intron (NM_133934, intron 10 of 10)	intron (NM_133934, intron 10 of 10)	-7264.0	NR_104478	69834.0	Mm.37380	NM_133717	ENSMUSG00000030055	Rab43	1810048P08Rik|2500004H21Rik|AW490415	RAB43, member RAS oncogene family	protein-coding	-0.0443829716880615	-0.0274581609075261	-0.0329936551330292	-0.0372704503736896	0.346421424500518	0.605817042025516	0.555233103001111	-0.0365229078623553	4.00293679835305	0.0683971781366627	1
Merged-chr6-35043191-2	chr6	35043091	35043291	+	841.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001164411, exon 11 of 11)	3' UTR (NM_001164411, exon 11 of 11)	-65192.0	NM_001025573	243753.0	Mm.440221	NM_001025573	ENSMUSG00000029847	Slc23a4	2010107G12Rik|Gm468	solute carrier family 23 member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-50452188-3	chr9	50452089	50452289	+	874.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42336.0	NM_029639	76509.0	Mm.29959	NM_029639	ENSMUSG00000032068	Plet1	0610037B23Rik|1600029D21Rik|AA407923|AU043048	placenta expressed transcript 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-6188444-2	chr7	6188344	6188544	+	714.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028316, intron 3 of 3)	intron (NM_028316, intron 3 of 3)	-8646.0	NM_178028	232836.0	Mm.246599	NM_178028	ENSMUSG00000034660	Galp	-	galanin-like peptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-93777517-1	chr10	93777417	93777617	+	628.0	f1_balb.idr	Intergenic	Intergenic	-54038.0	NM_001206851	327799.0	Mm.491598	NM_183199	ENSMUSG00000020020	Usp44	E430004F17Rik	ubiquitin specific peptidase 44	protein-coding	0.191962946470746	0.887771341474153	-0.087584898116325	-0.0924060326517529	0.318481512159669	-0.0799771957661013	-0.0862111885804471	-0.0915619986873532	-1.92879886547525	0.39195431545463	1
Merged-chr1-87634738-2	chr1	87634638	87634838	+	922.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110192, intron 1 of 26)	intron (NM_001110192, intron 1 of 26)	14426.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-102556309-4	chr11	102556175	102556375	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159492)	promoter-TSS (NM_001159492)	-117.0	NM_001159492	237943.0	Mm.260282	NM_001159492	ENSMUSG00000034621	Gpatch8	5430405G24Rik|AU018890|Fbm1|Gpatc8|mKIAA0553	G patch domain containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-23301939-2	chr11	23301839	23302039	+	576.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-4956.0	NM_001190401	17847.0	Mm.119155	NM_001190401	ENSMUSG00000056342	Usp34	A530081C03Rik|Murr2	ubiquitin specific peptidase 34	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-23146177-2	chr19	23146077	23146277	+	888.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_010638, intron 1 of 1)	intron (NM_010638, intron 1 of 1)	-3254.0	NR_035423	100316672.0		NR_035423	ENSMUSG00000080626	Mir1192	Mirn1192|mmu-mir-1192	microRNA 1192	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-23611224-4	chr16	23611048	23611248	+	720.758301	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023386, intron 1 of 1)	intron (NM_023386, intron 1 of 1)	1229.0	NM_023386	67775.0	Mm.475107	NM_023386	ENSMUSG00000033355	Rtp4	5830458K16Rik|Ifrg28	receptor transporter protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-108653191-1	chr9	108653091	108653291	+	557.0	f1_c57bl6.idr	intron (NM_001357285, intron 1 of 15)	ID_B1|SINE|B4	490.0	NM_001357285	23807.0	Mm.290447	NM_011790	ENSMUSG00000064145	Arih2	AI843547|ARI2|TRIAD1|UIP48	ariadne RBR E3 ubiquitin protein ligase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167280982-2	chr2	167280882	167281082	+	775.099976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40445.0	NM_008968	19223.0	Mm.2339	NM_008968	ENSMUSG00000017969	Ptgis	Cyp8|Cyp8a1|Pgis	prostaglandin I2 (prostacyclin) synthase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-139299655-2	chr7	139299555	139299755	+	890.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51173.0	NM_001098636	101631.0	Mm.334300	NM_001033206	ENSMUSG00000060260	Pwwp2b	AI594893|D7Ertd517e|D930023J19Rik|Pwwp2	PWWP domain containing 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83640805-3	chr6	83640700	83640900	+	910.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1-int|LTR|ERVL-MaLR	15316.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	3.68609634886481	3.02347997288693	2.7806771435831	2.94982552519029	4.11526964592028	4.01610619774403	2.80395058634481	3.65361163094916	0.881208462072183	0.137085852292275	0.577469500630244
Merged-chr18-82862343-4	chr18	82862252	82862452	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB8|LINE|L1	6455.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-18407046-2	chr16	18406946	18407146	+	638.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001272030)	TTS (NM_001272030)	6448.0	NM_001111063	12846.0	Mm.100940	NM_007744	ENSMUSG00000000326	Comt	Comt1|D16Wsu103e|D330014B15Rik	catechol-O-methyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-10591330-4	chr2	10591245	10591445	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001198808, exon 23 of 23)	3' UTR (NM_001198808, exon 23 of 23)	73190.0	NR_035418	100316831.0		NR_035418	ENSMUSG00000080594	Mir669h	Mirn669h|mir-669h|mmu-mir-669h	microRNA 669h	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-136803927-2	chr6	136803819	136804019	+	1000.0	f0_c57.idr|f1_balb.idr	TTS (NM_175652)	TTS (NM_175652)	512.0	NM_175652	320332.0	Mm.246720	NM_175652	ENSMUSG00000096010	Hist4h4	B130044J01Rik	histone cluster 4, H4	protein-coding	4.1950541621532	5.01306652907525	5.08774804109652	4.60869121789466	4.27989682901388	5.43813382548035	5.12238433006062	4.91378933026505	0.276412105773908	0.462737058191225	0.921327451738852
Merged-chr16-23269667-3	chr16	23269617	23269817	+	934.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252505, intron 2 of 7)	intron (NM_001252505, intron 2 of 7)	-20753.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-29521330-2	chr17	29521230	29521430	+	782.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TCTG)n|Simple_repeat|Simple_repeat	28263.0	NM_001162901	71138.0	Mm.158581	NM_001162901	ENSMUSG00000079580	Tmem217	4933413N12Rik|EG622644	transmembrane protein 217	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-106796263-2	chr1	106796163	106796363	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009190, intron 1 of 10)	CpG	462.0	NM_009190	20479.0	Mm.18705	NM_009190	ENSMUSG00000009907	Vps4b	8030489C12Rik|Skd1	vacuolar protein sorting 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10456923-3	chr19	10456850	10457050	+	924.5277710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001111140, exon 1 of 1)	exon (NM_001111140, exon 1 of 1)	497.0	NM_001111140	278795.0	Mm.490638	NM_001111140	ENSMUSG00000090291	Lrrc10b	Gm705|SerdinR	leucine rich repeat containing 10B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-102035320-1	chr5	102035220	102035420	+	552.0	f1_c57bl6.idr	intron (NM_172882, intron 2 of 66)	intron (NM_172882, intron 2 of 66)	34601.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106027909-2	chr11	106027809	106028009	+	601.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037712, intron 12 of 12)	intron (NM_001037712, intron 12 of 12)	-8963.0	NM_027946	71833.0	Mm.307455	NM_027946	ENSMUSG00000049354	Dcaf7	1700012F10Rik|2610037L01Rik|C86529|HAN11|Wdr68	DDB1 and CUL4 associated factor 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-84718695-2	chr2	84718614	84718814	+	568.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-3550.0	NM_144887	228136.0	Mm.288508	NM_144887	ENSMUSG00000034075	Zdhhc5	1110032A17Rik|AI451382|Zisp	zinc finger, DHHC domain containing 5	protein-coding	-1.3681463318974	-1.33624156493372	-1.34650167276047	-0.80669348975676	-1.36769697821496	-1.33401815676661	-1.34417900924365	-1.3534210303531	-2.3580830592467	0.49586638340111	1
Merged-chr15-58266620-4	chr15	58266499	58266699	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51707.0	NM_026346	67731.0	Mm.25683	NM_026346	ENSMUSG00000022358	Fbxo32	4833442G10Rik|AI430017|ATROGIN1|Gm20361|MAFbx	F-box protein 32	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-84791998-2	chr17	84791898	84792098	+	559.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	-1212.0	NM_028233	72416.0	Mm.217027	NM_028233	ENSMUSG00000024120	Lrpprc	3110001K13Rik|C76645|Gp130|Lrp130|Lsfc	leucine-rich PPR-motif containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-70949691-2	chr17	70949591	70949791	+	717.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	40825.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118726721-4	chr9	118726691	118726891	+	755.700012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 1 of 13)	intron (NM_001113514, intron 1 of 13)	15099.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0.836553727378361	0.876898405015312	0.54220283783046	1.18145953279067	0.341652124650867	0.365822242638958	0.358001227047875	0.526698194084193	-3.5593159705795	0.0460845202076677	1
Merged-chr18-44718689-1	chr18	44718589	44718789	+	577.333313	f0_c57.idr	intron (NM_001085373, intron 3 of 18)	intron (NM_001085373, intron 3 of 18)	-56423.0	NM_001085374	328949.0	Mm.312511	NM_001033406	ENSMUSG00000071856	Mcc	D18Ertd451e|E330037C19	mutated in colorectal cancers	protein-coding	-0.278260535297585	-0.422369207565663	-0.591117729283489	-0.333497483863855	-0.595744535287944	-0.588015115219541	-0.590562654362872	-0.451025866890926	-2.16489878029826	0.392266801447144	1
Merged-chr4-136696734-2	chr4	136696634	136696834	+	773.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010142, intron 3 of 15)	intron (NM_010142, intron 3 of 15)	74113.0	NM_001243262	242707.0	Mm.448979	NM_001243262	ENSMUSG00000070683	Lactbl1	-	lactamase, beta-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-126869819-4	chr10	126869729	126869929	+	799.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026858, intron 5 of 5)	intron (NM_026858, intron 5 of 5)	31542.0	NM_026858	68876.0	Mm.276769	NM_026858	ENSMUSG00000025436	Atp23	1110068E08Rik|2410012H02Rik|Xrcc6bp1	ATP23 metallopeptidase and ATP synthase assembly factor homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-83238925-2	chr17	83238825	83239025	+	638.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23642.0	NM_134117	106522.0	Mm.311974	NM_134117	ENSMUSG00000024247	Pkdcc	AI115348|AW548124|Adtk1|ESTM17|MAd1|Sgk493|Vlk|X83346	protein kinase domain containing, cytoplasmic	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-84748329-3	chr3	84748229	84748429	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-67248.0	NM_001177773	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-104460328-3	chr3	104460227	104460427	+	969.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025067, intron 17 of 17)	B4A|SINE|B4	51591.0	NM_001025067	269473.0	Mm.34855	NM_001025067	ENSMUSG00000032913	Lrig2	4632419I10Rik|BB096938|LIG-2	leucine-rich repeats and immunoglobulin-like domains 2	protein-coding	0.24887394978914	-0.0108109031161896	-0.0166627544761616	-0.021190085978419	0.563209269579965	-0.00949422474309053	0.782132012122955	-0.0203983617486143	2.53175970386514	0.263124201619659	1
Merged-chr4-149789036-2	chr4	149788936	149789136	+	744.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14769.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-31931691-2	chr16	31931591	31931791	+	629.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2160.0	NM_172822	239827.0	Mm.440388	NM_172822	ENSMUSG00000045625	Pigz	F630022B06Rik	phosphatidylinositol glycan anchor biosynthesis, class Z	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-146808727-5	chr5	146808495	146808695	+	989.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13639.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	2.47679442277938	1.90252182076091	2.1558901881839	2.43088672407816	2.70608721722246	1.91482925396285	2.17181777426288	2.23228138886362	0.0777225314878017	0.927358249061539	0.998431161219273
Merged-chr2-39226397-4	chr2	39226299	39226499	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024209)	promoter-TSS (NM_024209)	-50.0	NM_024209	67857.0	Mm.389242	NM_024209	ENSMUSG00000026753	Ppp6c	2310003C10Rik|Pp6C	protein phosphatase 6, catalytic subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95893352-3	chr3	95893240	95893440	+	825.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146134)	promoter-TSS (NM_146134)	-581.0	NM_146104	226548.0	Mm.306954	NM_146104	ENSMUSG00000015750	Aph1a	6530402N02Rik|APH-1a	aph1 homolog A, gamma secretase subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-108554919-8	chr6	108554842	108555042	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	65199.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-74386126-2	chr5	74386000	74386200	+	757.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114660, intron 5 of 8)	intron (NM_001114660, intron 5 of 8)	145642.0	NM_178672	212986.0	Mm.134147	NM_178672	ENSMUSG00000062110	Scfd2	E430013M20Rik|STXBP1L1	Sec1 family domain containing 2	protein-coding	3.02841123212663	3.07026695390884	2.52736564187854	2.22211059241503	2.23655281473373	1.36172285695028	2.30887433599294	1.28910850798724	-1.91539701127047	0.0389914250147336	0.281738952397138
Merged-chr7-44983833-2	chr7	44983733	44983933	+	754.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045521, exon 3 of 12)	non-coding (NR_045521, exon 3 of 12)	2587.0	NM_001252476	15469.0	Mm.27545	NM_019830	ENSMUSG00000109324	Prmt1	6720434D09Rik|AW214366|Hrmt1l2|Mrmt1	protein arginine N-methyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-35655281-2	chr8	35655167	35655367	+	895.866699	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081279, intron 1 of 2)	intron (NM_001081279, intron 1 of 2)	-66247.0	NR_040376	100504714.0	Mm.381744	NR_040376	ENSMUSG00000097357	Gm16793	-	predicted gene, 16793	ncRNA	2.05878986328222	2.56100096396154	1.29245088650193	2.88474599368504	2.07658018221637	2.58063240807021	1.30029440662239	2.59948388935435	-0.209079159726214	0.835190226501653	0.998431161219273
Merged-chr4-136119286-1	chr4	136119186	136119386	+	746.0	f1_balb.idr	Intergenic	Intergenic	-24536.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-144594050-4	chr2	144593981	144594181	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033297)	promoter-TSS (NM_001033297)	16.0	NM_001033297	228715.0	Mm.27391	NM_001033297	ENSMUSG00000074754	Smim26	Gm561	small integral membrane protein 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-24637980-4	chr16	24637866	24638066	+	895.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 5 of 12)	intron (NM_178665, intron 5 of 12)	-83889.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-70101989-1	chr12	70101889	70102089	+	543.0	f0_balb.idr	intron (NM_001081453, intron 1 of 28)	intron (NM_001081453, intron 1 of 28)	865.0	NM_001081453	18080.0	Mm.244047	NM_008697	ENSMUSG00000021068	Nin	3110068G20Rik|AI385615|AU024711|mKIAA1565	ninein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-24575261-2	chr12	24575161	24575361	+	690.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161406, intron 1 of 15)	intron (NM_001161406, intron 1 of 15)	2974.0	NM_001161406	195733.0	Mm.263068	NM_145890	ENSMUSG00000020656	Grhl1	LBP-32|MGR|Tcfcp2l2	grainyhead like transcription factor 1	protein-coding	1.69611326832104	2.03263097764792	1.66694211401234	2.47894275369758	2.04548307669775	1.52712218746012	1.84030257651698	2.24491747596368	-0.193373863591091	0.841834684533824	0.998431161219273
Merged-chr17-80445854-6	chr17	80445710	80445910	+	996.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009231, intron 6 of 21)	intron (NM_009231, intron 6 of 21)	34643.0	NM_009231	20662.0	Mm.60975	NM_009231	ENSMUSG00000024241	Sos1	4430401P03Rik|9630010N06|AI449023	SOS Ras/Rac guanine nucleotide exchange factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53353650-4	chr4	53353560	53353760	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-83428.0	NR_033139	381524.0	Mm.23351	NM_001033454	ENSMUSG00000086712	AI427809	Gm1659	expressed sequence AI427809	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-4133417-2	chr7	4133317	4133517	+	696.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001109765, intron 12 of 13)	intron (NM_001109765, intron 12 of 13)	3509.0	NR_033548	100037396.0	Mm.447887	NR_033548	ENSMUSG00000085886	D030047H15Rik	Gm15924	RIKEN cDNA D030047H15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-138271834-2	chr1	138271734	138271934	+	745.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1904.0	NM_177397	338375.0	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-14717977-3	chr9	14717893	14718093	+	918.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177905, intron 10 of 18)	intron (NM_177905, intron 10 of 18)	22740.0	NM_177905	330890.0	Mm.334969	NM_177905	ENSMUSG00000036912	Piwil4	9230101H05Rik|Miwi2	piwi-like RNA-mediated gene silencing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126806008-4	chr8	126805915	126806115	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43005.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-34154445-2	chr13	34154374	34154574	+	914.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8490.0	NM_001101430	69666.0	Mm.24788	NM_001101430	ENSMUSG00000071451	Psmg4	PAC-4|mPAC4	proteasome (prosome, macropain) assembly chaperone 4	protein-coding	0.450844757458635	0.120074347841974	0.115164698270513	0.604988189120683	0.356178082387032	0.455040736633558	0.282439463251362	0.112051641758858	-0.294434544802609	0.879333771531584	1
Merged-chr19-34520851-4	chr19	34520776	34520976	+	808.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111100, intron 3 of 9)	intron (NM_001111100, intron 3 of 9)	6598.0	NM_001111100	16889.0	Mm.157545	NM_021460	ENSMUSG00000024781	Lipa	AA960673|Lal|Lip-1|Lip1	lysosomal acid lipase A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43478353-4	chr4	43478245	43478445	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5364.0	NM_019436	54390.0	Mm.31775	NM_019436	ENSMUSG00000028460	Sit1	Sit	suppression inducing transmembrane adaptor 1	protein-coding	-1.00611288434222	-1.24342942655438	-0.940807701217955	-1.26193839365205	-1.26998517735704	-1.24122732662225	-1.25129080164274	-1.26044425099987	-2.31507841253797	0.488741846047341	1
Merged-chr8-119841199-3	chr8	119841136	119841336	+	944.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028071)	promoter-TSS (NM_028071)	-657.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-62491623-4	chr10	62491532	62491732	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4827.0	NM_001358543	30930.0	Mm.260703	NM_133672	ENSMUSG00000020078	Vps26a	AA407240|HB58|Vps26	VPS26 retromer complex component A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85374284-4	chr12	85374181	85374381	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026775, intron 1 of 4)	CpG	436.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-136809880-4	chr6	136809768	136809968	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177688, exon 1 of 1)	3' UTR (NM_177688, exon 1 of 1)	1620.0	NM_177688	232440.0	Mm.154564	NM_177688	ENSMUSG00000060032	H2afj	E130307C13	H2A histone family, member J	protein-coding	-0.301972867824816	-0.0575756434594048	0.828904986223622	-0.293815872535825	-0.300751830858691	-0.0522108274888539	-0.287578016779033	-0.292964363436219	-3.1132771767797	0.180945639541001	1
Merged-chr6-114268421-2	chr6	114268330	114268530	+	885.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-14205.0	NM_178703	232333.0	Mm.5260	NM_178703	ENSMUSG00000030310	Slc6a1	A730043E01|GABATHG|GABATR|GAT-1|Gabt|Gabt1|Gat1|XT-1|Xtrp1	solute carrier family 6 (neurotransmitter transporter, GABA), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-33902628-1	chr8	33902528	33902728	+	620.0	f0_c57.idr	intron (NM_001042675, intron 1 of 6)	intron (NM_001042675, intron 1 of 6)	27235.0	NM_019733	19663.0	Mm.323997	NM_019733	ENSMUSG00000031586	Rbpms	2010300K22Rik|2700019M19Rik|AU017537|RBP-MS|hermes	RNA binding protein gene with multiple splicing	protein-coding	0.610067470157963	0.138316702156026	0.31639053668423	0.298477912869433	0.272861301925512	0.996044137249681	0.133224896234815	0.127606665115015	0.59621674979356	0.753187787882105	1
Merged-chr6-125164810-4	chr6	125164709	125164909	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289726, intron 2 of 6)	CpG	964.0	NM_008084	14433.0	Mm.304088	NM_008084	ENSMUSG00000057666	Gapdh	Gapd	glyceraldehyde-3-phosphate dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-86889222-1	chr8	86889122	86889322	+	649.0	f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-3964.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	1.79763980622618	2.03350914518316	1.08144575758308	2.20138498684105	1.41809104127391	2.46466936109229	1.08683957341995	1.78775005650303	-0.108947123713175	0.92469720632903	0.998431161219273
Merged-chr19-6301766-2	chr19	6301666	6301866	+	629.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4691.0	NM_001033342	240505.0	Mm.329622	NM_001033342	ENSMUSG00000024769	Cdc42bpg	BC046418|MRCKgamma	CDC42 binding protein kinase gamma (DMPK-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-26533998-9	chr14	26533826	26534026	+	928.555542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001347494, exon 1 of 20)	5' UTR (NM_001347494, exon 1 of 20)	698.0	NM_032008	83997.0	Mm.36769	NM_032008	ENSMUSG00000021870	Slmap	D330001L02Rik|Miranda|Slap|mKIAA1601	sarcolemma associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-99097083-2	chr12	99096983	99097183	+	691.125	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	65725.0	NR_038130	67639.0	Mm.87374	NR_038130	ENSMUSG00000113210	4930474N09Rik	-	RIKEN cDNA 4930474N09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-12050687-3	chr11	12050567	12050767	+	960.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13247.0	NM_010345	14783.0	Mm.273117	NM_010345	ENSMUSG00000020176	Grb10	5730571D09Rik|AI325020|Meg1|mKIAA0207	growth factor receptor bound protein 10	protein-coding	0.909768343832603	0.278080352794134	0.271196604203028	0.265871832072255	0.536770668481371	0.911663734924188	0.272716543554632	0.705497174595927	0.925454572913091	0.629455116917161	1
Merged-chr15-25317814-2	chr15	25317714	25317914	+	687.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	95950.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-87649126-2	chr10	87649026	87649226	+	771.916626	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	127331.0	NM_008777	18478.0	Mm.263539	NM_008777	ENSMUSG00000020051	Pah	AW106920	phenylalanine hydroxylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-115644090-4	chr3	115643974	115644174	+	864.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	70981.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-33678975-3	chr17	33678878	33679078	+	741.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109913, intron 1 of 16)	intron (NM_001109913, intron 1 of 16)	6480.0	NM_001109913	76936.0	Mm.311439	NM_029804	ENSMUSG00000059208	Hnrnpm	2610023M21Rik|AA409009|Hnrpm|mKIAA4193	heterogeneous nuclear ribonucleoprotein M	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-35827035-4	chr2	35826946	35827146	+	898.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029774, intron 6 of 9)	intron (NM_029774, intron 6 of 9)	7856.0	NR_040618	77665.0	Mm.400558	NR_040618	ENSMUSG00000086449	9030204H09Rik	-	RIKEN cDNA 9030204H09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3684794-2	chr4	3684623	3684823	+	986.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 1 of 12)	B4A|SINE|B4	6602.0	NM_010747	17096.0	Mm.317331	NM_010747	ENSMUSG00000042228	Lyn	AA407514|Hck-2|p53Lyn|p56Lyn	LYN proto-oncogene, Src family tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-83173054-1	chr15	83172954	83173154	+	974.0	f0_balb.idr	promoter-TSS (NM_029787)	promoter-TSS (NM_029787)	-846.0	NM_029787	109754.0	Mm.22560	NM_029787	ENSMUSG00000018042	Cyb5r3	0610016L08Rik|2500002N19Rik|C85115|Dia-1|Dia1|WU:AL591952.1-001|WU:AL591952.1-002|WU:AL591952.1-003|WU:Cyb5r3	cytochrome b5 reductase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-16160625-3	chr4	16160523	16160723	+	710.388855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_138102, intron 1 of 11)	intron (NR_138102, intron 1 of 11)	3020.0	NM_138952	192656.0	Mm.112765	NM_138952	ENSMUSG00000041135	Ripk2	2210420D18Rik|CARD3|CARDIAK|CCK|D4Bwg0615e|RICK|RIP2	receptor (TNFRSF)-interacting serine-threonine kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-150588314-2	chr5	150588214	150588414	+	908.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133898, intron 1 of 4)	intron (NM_133898, intron 1 of 4)	6211.0	NM_133898	100637.0	Mm.279932	NM_133898	ENSMUSG00000041132	N4bp2l1	2410024N18Rik|AI428195|B230342M21Rik	NEDD4 binding protein 2-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-107540882-2	chr14	107540782	107540982	+	656.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4A|LINE|L1	-1054362.0	NR_045938	73631.0	Mm.48862	NR_045938	ENSMUSG00000099794	1700128A07Rik	-	RIKEN cDNA 1700128A07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-85241076-1	chr13	85240976	85241176	+	740.0	f0_balb.idr	intron (NM_145452, intron 8 of 24)	intron (NM_145452, intron 8 of 24)	48410.0	NM_145452	218397.0	Mm.259653	NM_145452	ENSMUSG00000021549	Rasa1	Gap|RasGAP|Rasa	RAS p21 protein activator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-9629888-4	chr15	9629799	9629999	+	975.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305042, intron 25 of 36)	intron (NM_001305042, intron 25 of 36)	-100023.0	NM_008372	16197.0	Mm.389	NM_008372	ENSMUSG00000003882	Il7r	CD127|IL-7Ralpha	interleukin 7 receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-84735977-4	chr16	84735879	84736079	+	836.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017404)	promoter-TSS (NM_017404)	-677.0	NM_017404	27393.0	Mm.103655	NM_017404	ENSMUSG00000022889	Mrpl39	C21orf8|MRP-L5|ORF22|Rpml5	mitochondrial ribosomal protein L39	protein-coding	1.98739659512132	1.00000904628364	2.08277958058272	2.1924583715338	1.32064540901737	2.18297013450769	0.98214387958251	0.961889927082639	-1.17707974415077	0.354047093235193	0.853132398390271
Merged-chr8-41416308-2	chr8	41416241	41416441	+	669.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013522, intron 1 of 8)	intron (NM_013522, intron 1 of 8)	777.0	NM_013522	14300.0	Mm.217312	NM_013522	ENSMUSG00000031590	Frg1	-	FSHD region gene 1	protein-coding	3.10855451206114	3.40334661598067	3.28764742074959	4.13991191197533	2.36399215496499	2.04593888253683	3.70344097043824	3.65722367838963	-0.622786413871504	0.356434885687539	0.85378439273359
Merged-chr17-25698601-2	chr17	25698501	25698701	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18571.0	NM_022422	64337.0	Mm.171123	NM_022422	ENSMUSG00000025739	Gng13	1500031D04Rik|AB030194|Ggamma13	guanine nucleotide binding protein (G protein), gamma 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-40258590-4	chr10	40258487	40258687	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026113)	promoter-TSS (NM_026113)	-875.0	NM_001359492	67371.0	Mm.64104	NM_026113	ENSMUSG00000019837	Gtf3c6	2410016F19Rik|AU019813	general transcription factor IIIC, polypeptide 6, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101360645-4	chr7	101360551	101360751	+	968.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040111, intron 1 of 33)	intron (NM_001040111, intron 1 of 33)	12582.0	NM_001040111	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	-0.0332839804641053	-0.1855753882468	-0.192578512473861	-0.198044997030362	0.120947460114829	-0.184009198912729	-0.191026075069648	1.03012789603601	3.36793640506115	0.130377078727298	1
Merged-chr4-124645349-4	chr4	124645254	124645454	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12292.0	NM_011141	18991.0	Mm.297371	NM_011141	ENSMUSG00000090125	Pou3f1	Oct-6|Oct6|Otf-6|Otf6|Scip|Test1|Tst-1|Tst1	POU domain, class 3, transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-50490303-4	chr17	50490197	50490397	+	937.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19250.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-17746683-3	chr14	17746561	17746761	+	745.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113417, intron 1 of 9)	L1MB8|LINE|L1	85701.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-137285236-2	chr5	137285136	137285336	+	914.3333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3018.0	NM_009599	11423.0	Mm.255464	NM_009599	ENSMUSG00000023328	Ache	-	acetylcholinesterase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-54032521-3	chr10	54032420	54032620	+	673.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008548, intron 2 of 12)	intron (NM_008548, intron 2 of 12)	43276.0	NM_008548	17155.0	Mm.117294	NM_008548	ENSMUSG00000003746	Man1a	Man1a1|PCR1	mannosidase 1, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27268374-2	chr2	27268274	27268474	+	890.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NR_133905, intron 27 of 29)	intron (NR_133905, intron 27 of 29)	-21071.0	NM_138665	192166.0	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-109431083-3	chr4	109430995	109431195	+	919.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145948, intron 9 of 17)	intron (NM_001145948, intron 9 of 17)	15448.0	NM_001145948	230603.0	Mm.33091	NM_153392	ENSMUSG00000028555	Ttc39a	4922503N01Rik	tetratricopeptide repeat domain 39A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-32575397-4	chr4	32575310	32575510	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001109661, exon 4 of 5)	exon (NM_001109661, exon 4 of 5)	-3748.0	NR_026843	414068.0	Mm.389550	NR_026843	ENSMUSG00000086150	Bach2os	-	BTB and CNC homology 2, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81264452-2	chr10	81264352	81264552	+	617.833374	f1_balb.idr|f1_c57bl6.idr	TTS (NM_025317)	TTS (NM_025317)	2474.0	NM_025317	66047.0	Mm.43397	NM_025317	ENSMUSG00000034932	Mrpl54	0610008M19Rik|D10Sut1e	mitochondrial ribosomal protein L54	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10305810-4	chr19	10305701	10305901	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198114)	promoter-TSS (NM_198114)	-924.0	NM_198114	269060.0	Mm.329718	NM_198114	ENSMUSG00000035735	Dagla	Nsddr	diacylglycerol lipase, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-84092458-7	chr18	84092335	84092535	+	829.8809809999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146090, intron 1 of 1)	intron (NM_146090, intron 1 of 1)	4277.0	NM_146090	225791.0	Mm.147052	NM_146090	ENSMUSG00000049090	Zadh2	C530046K17Rik|PTGR-3|Pthr3	zinc binding alcohol dehydrogenase, domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28809602-2	chr17	28809502	28809702	+	704.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081315, intron 2 of 12)	ID_B1|SINE|B4	8476.0	NM_001081315	268936.0	Mm.291877	NM_199061	ENSMUSG00000063952	Brpf3	AI413466|AW493400|mKIAA1286	bromodomain and PHD finger containing, 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-57761941-1	chr10	57761841	57762041	+	555.0	f0_balb.idr	Intergenic	Intergenic	-22982.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-75667121-1	chr12	75667021	75667221	+	621.0	f0_balb.idr	intron (NM_028203, intron 1 of 1)	intron (NM_028203, intron 1 of 1)	2416.0	NM_028203	72338.0	Mm.341719	NM_028203	ENSMUSG00000045690	Wdr89	2600001A11Rik	WD repeat domain 89	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-64789496-4	chr9	64789397	64789597	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21514.0	NM_001162917	102442.0	Mm.222473	NM_176935	ENSMUSG00000053641	Dennd4a	AI115600|AI851943|F730015K02Rik	DENN/MADD domain containing 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-189013159-2	chr1	189013059	189013259	+	577.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-5319.0	NR_153196	226823.0	Mm.209880	NM_172650	ENSMUSG00000026608	Kctd3	4930438A20Rik|9330185B06|E330032J19Rik|NY-REN-45	potassium channel tetramerisation domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-11054391-2	chr18	11054285	11054485	+	926.5	f0_balb.idr|f1_c57bl6.idr	exon (NM_010258, exon 2 of 7)	exon (NM_010258, exon 2 of 7)	-1818.0	NR_105022	68434.0	Mm.57626	NR_105022	ENSMUSG00000097222	1010001N08Rik	Gata6as	RIKEN cDNA 1010001N08 gene	ncRNA	0.214757747833842	0.699217643014953	0.537079209638465	0.0793545325220366	0.0731290526822147	0.589353512827953	0.0850204362646774	0.0801242300674491	-1.29978764892703	0.52987052128473	1
Merged-chr3-88168365-2	chr3	88168265	88168465	+	652.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310593, intron 10 of 10)	intron (NM_001310593, intron 10 of 10)	9420.0	NR_045997	76642.0	Mm.424420	NR_045997	ENSMUSG00000096935	1700113A16Rik	2210408E11Rik|AA408983	RIKEN cDNA 1700113A16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-155591444-1	chr2	155591344	155591544	+	562.0	f1_c57bl6.idr	intron (NM_008180, intron 1 of 12)	intron (NM_008180, intron 1 of 12)	1366.0	NM_001291111	14854.0	Mm.252316	NM_008180	ENSMUSG00000027610	Gss	AI314904|GS-A/GS-B|GSH-S	glutathione synthetase	protein-coding	1.4035248106706	2.54086735341174	1.68978871982475	2.11883467211758	1.02223706790081	1.92088647472099	1.07737602446164	2.13073149696033	-1.00091474723811	0.385442618599266	0.876154616828737
Merged-chr1-151105428-4	chr1	151105334	151105534	+	890.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32600.0	NR_038011	402734.0	Mm.337666	NR_038011		C730036E19Rik	lncLSTR	RIKEN cDNA C730036E19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35205223-2	chr17	35205123	35205323	+	585.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_105940)	promoter-TSS (NR_105940)	128.0	NM_010735	16992.0	Mm.87787	NM_010735	ENSMUSG00000024402	Lta	LT|LT-[a]|LT-alpha|LT[a]|LTalpha|Ltx|TNF-beta|TNFSF1|Tnfb|Tnfsf1b|Tnlg1e|hlb382	lymphotoxin A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91542659-2	chr16	91542559	91542759	+	610.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4435.0	NM_008338	15980.0	Mm.249364	NM_008338	ENSMUSG00000022965	Ifngr2	Ifgr2|Ifgt	interferon gamma receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-89100656-4	chr11	89100557	89100757	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26816.0	NM_001033266	217071.0	Mm.342127	NM_001033266	ENSMUSG00000072553	Gm525	-	predicted gene 525	protein-coding	3.65983040378477	3.30042903802552	2.69456084547423	2.73078060504966	3.04229293250733	1.61891212686268	3.04034522564062	2.35959871835177	-0.92508131782017	0.219319348895018	0.710517864987671
Merged-chr7-133050820-4	chr7	133050716	133050916	+	860.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009980, intron 2 of 10)	intron (NM_009980, intron 2 of 10)	31044.0	NM_001347623	13017.0	Mm.246240	NM_009980	ENSMUSG00000030970	Ctbp2	AA407280|D7Ertd45e|Gtrgeo6|Ribeye	C-terminal binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-29211209-2	chr6	29211109	29211309	+	612.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001302934, intron 2 of 14)	intron (NM_001302934, intron 2 of 14)	1088.0	NM_011829	23917.0	Mm.260707	NM_011829	ENSMUSG00000003500	Impdh1	B930086D20Rik|IMPDH-I	inosine monophosphate dehydrogenase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-71137186-4	chr12	71137111	71137311	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286203)	promoter-TSS (NM_001286203)	363.0	NM_001163378	76967.0	Mm.87290	NM_029818	ENSMUSG00000034601	2700049A03Rik	Ta3|Talpid3|mKIAA0586	RIKEN cDNA 2700049A03 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191280334-2	chr1	191280225	191280425	+	768.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	37793.0	NM_025424	66208.0	Mm.46444	NM_025424	ENSMUSG00000037499	Nenf	1110060M21Rik|SCIRP10|Spuf	neuron derived neurotrophic factor	protein-coding	1.20375038324787	0.990884714126742	1.93443314764646	0.923032933055718	0.878738121788722	0.722526947457225	2.40173201718651	0.684080550896794	0.299875538132193	0.82825759712368	0.998431161219273
Merged-chr6-72414994-2	chr6	72414894	72415094	+	688.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019802, intron 2 of 14)	MTD|LTR|ERVL-MaLR	686.0	NM_019802	56316.0	Mm.19937	NM_019802	ENSMUSG00000053460	Ggcx	-	gamma-glutamyl carboxylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-100006960-6	chr12	100006920	100007120	+	871.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164426, intron 2 of 2)	intron (NM_001164426, intron 2 of 2)	42521.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-36710564-2	chr16	36710464	36710664	+	708.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285788, intron 3 of 7)	intron (NM_001285788, intron 3 of 7)	16586.0	NM_001285791	106347.0	Mm.17807	NM_134109	ENSMUSG00000022900	Ildr1	AU041483|AU044638	immunoglobulin-like domain containing receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80743557-2	chr10	80743457	80743657	+	638.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	-1282.0	NM_007460	11776.0	Mm.27082	NM_007460	ENSMUSG00000020198	Ap3d1	AA407035|Ap3d|Bolvr|mBLVR1|mh|mocha	adaptor-related protein complex 3, delta 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-31256788-4	chr2	31256682	31256882	+	848.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019681, intron 1 of 7)	intron (NM_019681, intron 1 of 7)	10859.0	NM_019681	14299.0	Mm.249318	NM_019681	ENSMUSG00000062661	Ncs1	9430075O15Rik|A730032G13Rik|AI836659|Freq|Mfreq|NCS-1	neuronal calcium sensor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-38787294-2	chr12	38787194	38787394	+	592.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163154, intron 1 of 9)	IMPB_01|Satellite|Satellite	3583.0	NM_001163154	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	0.0730244304598793	0.29547626031457	0.783742505928648	0.0813478810660228	0.0742658165237278	0.300628095477226	0.796636667439171	0.0822209109238063	0.0406562532522771	0.984193836026517	1
Merged-chr1-64617241-4	chr1	64617135	64617335	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025964)	promoter-TSS (NM_025964)	-67.0	NM_025964	67099.0	Mm.46394	NM_025964	ENSMUSG00000025956	Mettl21a	2310038H17Rik|AI464204|Fam119a	methyltransferase like 21A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-34875973-2	chr13	34875895	34876095	+	950.666626	f0_balb.idr|f0_c57.idr	intron (NM_013830, intron 1 of 14)	CpG	501.0	NM_013830	19134.0	Mm.10027	NM_013830	ENSMUSG00000021413	Prpf4b	2610037H07|Prp4|Prp4k|Prpk|cbp143	pre-mRNA processing factor 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-99224691-5	chr5	99224729	99224929	+	817.866699	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181318, intron 10 of 13)	intron (NM_181318, intron 10 of 13)	28098.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-19942413-4	chr4	19942301	19942501	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19835.0	NM_175406	242341.0	Mm.19298	NM_175406	ENSMUSG00000028238	Atp6v0d2	1620401A02Rik|AI324824|V-ATPase	ATPase, H+ transporting, lysosomal V0 subunit D2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-56808942-4	chr10	56808842	56809042	+	926.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	376961.0	NR_152768	102640560.0	Mm.417249	NR_152768		Gm36595	-	predicted gene, 36595	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-43880402-1	chr19	43880302	43880502	+	541.0	f0_balb.idr	promoter-TSS (NM_001306088)	promoter-TSS (NM_001306088)	-634.0	NM_001306088	71972.0	Mm.159024	NM_028029	ENSMUSG00000025195	Dnmbp	2410003L07Rik|2410003M15Rik|TUBA	dynamin binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70486519-1	chr8	70486419	70486619	+	625.0	f1_c57bl6.idr	intron (NM_182991, intron 1 of 7)	intron (NM_182991, intron 1 of 7)	839.0	NM_182991	67937.0	Mm.23002	NM_182991	ENSMUSG00000035964	Tmem59l	5330410G16Rik	transmembrane protein 59-like	protein-coding	0.380027821610471	-0.0409002172995357	-0.0452497229223611	-0.0485880445980651	0.195636092593119	0.292961987520734	-0.0442926036584196	0.348498739498371	1.07524576249432	0.620849322691566	1
Merged-chr11-75654173-4	chr11	75654073	75654273	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080774, intron 1 of 31)	intron (NM_001080774, intron 1 of 31)	-1842.0	NM_001080775	17913.0	Mm.234502	NM_008659	ENSMUSG00000017774	Myo1c	C80397|MMIb|MYO1E|NMI|mm1beta|myr2	myosin IC	protein-coding	5.00931367264337	4.85135598960388	4.83112662332622	3.22385416613159	5.09771522581522	4.25396572705098	4.98285230949766	5.08497888489464	0.323041428184746	0.447977884197949	0.914814758844887
Merged-chr7-114415276-4	chr7	114415160	114415360	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011055)	promoter-TSS (NM_011055)	6.0	NM_011055	18576.0	Mm.430730	NM_011055	ENSMUSG00000030671	Pde3b	9830102A01Rik|AI847709	phosphodiesterase 3B, cGMP-inhibited	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-80259679-7	chr12	80259567	80259767	+	874.38092	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134156, intron 1 of 20)	CpG	704.0	NM_134156	109711.0	Mm.253564	NM_134156	ENSMUSG00000015143	Actn1	3110023F10Rik|Actn1a	actinin, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-114362576-4	chr6	114362475	114362675	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-35361.0	NM_001317125	15465.0	Mm.333327	NM_008285	ENSMUSG00000053004	Hrh1	Bphs|H1R|HH1R|Hir	histamine receptor H1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-152294683-3	chr2	152294603	152294803	+	687.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024196, intron 1 of 7)	intron (NM_024196, intron 1 of 7)	831.0	NM_024196	67231.0	Mm.288733	NM_024196	ENSMUSG00000027465	Tbc1d20	1110028I04Rik|2810442O16Rik|AI414693|bs	TBC1 domain family, member 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-67798156-3	chr18	67798048	67798248	+	677.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045376, intron 1 of 3)	intron (NR_045376, intron 1 of 3)	1795.0	NR_045376	75286.0	Mm.307315	NR_045376		4930549G23Rik	-	RIKEN cDNA 4930549G23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-46599874-3	chr18	46599785	46599985	+	729.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010120, intron 2 of 2)	MLT1D|LTR|ERVL-MaLR	2181.0	NM_010120	13664.0	Mm.262037	NM_010120	ENSMUSG00000057561	Eif1a	C76390|Ef1a|Eftu|Eif4c|eIF-1A|eIF-4C	eukaryotic translation initiation factor 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83600783-4	chr11	83600687	83600887	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_036453, intron 1 of 8)	intron (NR_036453, intron 1 of 8)	-7700.0	NM_009139	20305.0	Mm.137	NM_009139	ENSMUSG00000018927	Ccl6	MRP-1|Scya6|c10	chemokine (C-C motif) ligand 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-110600198-4	chr13	110600087	110600287	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA5|LINE|L1	205143.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-76961653-4	chr12	76961595	76961795	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361663, intron 1 of 4)	intron (NM_001361663, intron 1 of 4)	553.0	NM_008558	17187.0	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-120273748-2	chr14	120273648	120273848	+	547.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1921.0	NM_207515	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-20891531-2	chr9	20891431	20891631	+	918.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_145610, exon 10 of 11)	exon (NM_145610, exon 10 of 11)	3356.0	NM_145610	235036.0	Mm.2930	NM_145610	ENSMUSG00000004100	Ppan	A230087P06Rik|SSF1	peter pan homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-58354193-3	chr19	58354088	58354288	+	862.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285457, intron 4 of 9)	intron (NM_001285457, intron 4 of 9)	57984.0	NR_040449	791347.0	Mm.452208	NR_040449		Gm10007	-	predicted gene 10007	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47510579-2	chr17	47510479	47510679	+	878.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081635, intron 1 of 6)	B1F1|SINE|Alu	5528.0	NM_001081635	12445.0	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-98708802-3	chr10	98708712	98708912	+	581.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-205830.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-57575715-2	chr8	57575615	57575815	+	643.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001167981, intron 2 of 11)	intron (NM_001167981, intron 2 of 11)	63872.0	NM_008252	97165.0	Mm.276881	NM_008252	ENSMUSG00000054717	Hmgb2	C80539|HMG-2|Hmg2	high mobility group box 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36528107-2	chr18	36528007	36528207	+	629.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271546)	promoter-TSS (NM_001271546)	-45.0	NM_172830	240215.0	Mm.135463	NM_172830	ENSMUSG00000024485	Slc4a9	AE4|D630003B07|D630024F24Rik	solute carrier family 4, sodium bicarbonate cotransporter, member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-49154036-3	chr14	49153924	49154124	+	719.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18222.0	NM_027492	70646.0	Mm.275688	NM_027492	ENSMUSG00000036282	Naa30	4930487N19Rik|5730533P17Rik|AI447922|AW322455|Nat12	N(alpha)-acetyltransferase 30, NatC catalytic subunit	protein-coding	2.17911930480104	1.96110897339225	2.22609642806018	3.05398723323796	2.66007615271868	2.69443054938655	2.24309191078165	2.02907599204447	-0.00499801763735296	0.995192256964497	0.99846555070744
Merged-chr11-86610412-4	chr11	86610302	86610502	+	940.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356531, intron 8 of 11)	RSINE1|SINE|B4	-26244.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-116542636-2	chr14	116542536	116542736	+	788.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	-382661.0	NM_001079844	23888.0	Mm.440025	NM_011821	ENSMUSG00000058571	Gpc6	-	glypican 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-122643310-2	chr14	122643210	122643410	+	544.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_153443, intron 8 of 24)	L1M2|LINE|L1	108982.0	NM_144844	110821.0	Mm.23876	NM_144844	ENSMUSG00000041650	Pcca	C79630	propionyl-Coenzyme A carboxylase, alpha polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-11138457-3	chr8	11138352	11138552	+	963.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-130022.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-42129116-4	chr19	42129021	42129221	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027106)	promoter-TSS (NM_027106)	-128.0	NM_027106	69534.0	Mm.30060	NM_027106	ENSMUSG00000018821	Avpi1	2310008N12Rik|AA410041|VIT32|esu|mVIT32	arginine vasopressin-induced 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45230000-2	chr7	45229900	45230100	+	751.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285498, intron 9 of 11)	intron (NM_001285498, intron 9 of 11)	8839.0	NM_007645	12493.0	Mm.3689	NM_007645	ENSMUSG00000030798	Cd37	Tspan26	CD37 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-17711585-4	chr12	17711489	17711689	+	973.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016677, intron 1 of 3)	MTC|LTR|ERVL-MaLR	20780.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	3.96527260999145	4.791620150405	3.75146307919061	3.79690394871008	4.54592441683051	3.90684696944792	4.31148802280275	3.95114259465145	0.0930296335041839	0.838279031241963	0.998431161219273
Merged-chr6-98332896-4	chr6	98332772	98332972	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001128092, intron 2 of 3)	intron (NM_001128092, intron 2 of 3)	9882.0	NM_001128092	330390.0	Mm.484161	NM_001128092	ENSMUSG00000090667	Gm765	-	predicted gene 765	protein-coding	-0.0820722532274279	-0.0555567680635322	0.745882566626792	-0.0707637898139752	-0.0803723997565657	-0.0536556970303327	1.13351794276921	-0.0695895652003423	0.894594251942337	0.695023720230288	1
Merged-chr10-19062248-4	chr10	19062126	19062326	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46816.0	NM_009397	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	7.10456397186719	6.9327818566762	7.4227315894923	6.89461770152104	7.24670849266043	6.90452492586215	7.66358727109129	7.02180922602451	0.143022579955925	0.464828973496707	0.922521920152562
Merged-chr4-137372344-2	chr4	137372243	137372443	+	878.541626	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-14584.0	NM_001243769	12540.0	Mm.1022	NM_009861	ENSMUSG00000006699	Cdc42	AI747189|AU018915	cell division cycle 42	protein-coding	1.0636176040897	1.42499469100825	1.1262131448937	2.3846990566475	2.10061233613115	2.5710734252553	1.77797664567797	2.39788400082175	1.54823266224051	0.162858150178449	0.62517043774973
Merged-chr4-139197639-4	chr4	139197539	139197739	+	843.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	3528.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	2.04533725307613	2.44325691102697	3.33405060013652	2.79257556066002	2.30453672954172	1.4568080367857	2.37814410064359	2.30349191187236	-1.23559565509672	0.14865638271397	0.599939136169878
Merged-chr11-100575070-6	chr11	100574960	100575160	+	972.589294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146318)	promoter-TSS (NM_001146318)	121.0	NM_009923	12799.0	Mm.15711	NM_009923	ENSMUSG00000006782	Cnp	CNPase|Cnp-1|Cnp1	2',3'-cyclic nucleotide 3' phosphodiesterase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-37861021-2	chr13	37860921	37861121	+	922.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039188, intron 1 of 9)	intron (NM_001039188, intron 1 of 9)	-27413.0	NR_033218	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-113157819-2	chr12	113157723	113157923	+	561.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_134041, intron 4 of 7)	intron (NM_134041, intron 4 of 7)	1402.0	NM_134041	104732.0	Mm.87616	NM_134041	ENSMUSG00000037466	Tedc1	4930427A07Rik|AA536649|mFLJ00116	tubulin epsilon and delta complex 1	protein-coding	1.55459879101882	1.61781517460914	1.55651972853803	1.88937173816206	1.09932949479974	0.955635353252538	0.932066202356833	2.69752854003355	0.159183502251153	0.8979554055547	0.998431161219273
Merged-chr11-64079533-4	chr11	64079423	64079623	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033780)	promoter-TSS (NR_033780)	39.0	NR_033780	66456.0	Mm.124828	NR_033780	ENSMUSG00000087497	2810001G20Rik	AW045514	RIKEN cDNA 2810001G20 gene	ncRNA	4.01273501441917	4.1618047621773	4.63008803415641	4.67584119911476	4.33358050969356	4.38946708165376	4.57139025636035	4.00054305736993	-0.0816330551961373	0.839292419456928	0.998431161219273
Merged-chr1-137922921-4	chr1	137922817	137923017	+	875.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43538.0	NR_029795	735252.0		NR_029795	ENSMUSG00000065565	Mir181a-1	Mirn181a-1|Mirn213|miR-213|mir-181a-1|mmu-mir-213	microRNA 181a-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-111065273-2	chr11	111065173	111065373	+	727.583313	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008425)	promoter-TSS (NM_008425)	-891.0	NM_008425	16518.0	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding	0.53102836072229	1.38475713572022	0.55514531904688	0.5461754128661	1.28912692647019	1.39873516791325	0.557689361046181	1.04828995953513	1.28602099464555	0.444179903502136	0.912265842646861
Merged-chr9-70502713-3	chr9	70502541	70502741	+	559.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr	intron (NM_001357494, intron 2 of 14)	intron (NM_001357494, intron 2 of 14)	737.0	NM_001357494	93836.0	Mm.29783	NM_033604	ENSMUSG00000032217	Rnf111	ARK|Arkadia	ring finger 111	protein-coding	0.659375261873818	0.919028947123985	0.289772211098916	0.284396816728025	0.668293370127203	0.930386463972603	0.291307235635014	0.285336543437291	0.04026458339144	0.983111373142823	1
Merged-chr7-141373492-2	chr7	141373392	141373592	+	624.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8382.0	NR_033532	320871.0	Mm.475463	NM_177280	ENSMUSG00000086844	B230206H07Rik	-	RIKEN cDNA B230206H07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-29507486-2	chr15	29507386	29507586	+	574.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx10|LINE|L1	205918.0	NR_039542	100628607.0		NR_039542	ENSMUSG00000092639	Mir3964	mmu-mir-3964|mu-mir-3964	microRNA 3964	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-25192076-3	chr8	25191976	25192176	+	856.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177089, intron 2 of 12)	intron (NM_177089, intron 2 of 12)	9466.0	NM_199323	320165.0	Mm.308452	NM_177089	ENSMUSG00000065954	Tacc1	4833447E04Rik|AA960202|B230378H13Rik	transforming, acidic coiled-coil containing protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91420528-2	chr16	91420428	91420628	+	726.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008349, intron 5 of 6)	intron (NM_008349, intron 5 of 6)	14293.0	NM_008349	16155.0	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-112317559-2	chr5	112317459	112317659	+	894.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8810.0	NM_018783	54723.0	Mm.172947	NM_018783	ENSMUSG00000029345	Tfip11	2810002G02Rik|AF097181|AW046167|Srr1|TIP33|Tip39	tuftelin interacting protein 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-30789150-4	chr16	30789046	30789246	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	189423.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-75707217-1	chr2	75707117	75707317	+	588.0	f1_balb.idr	Intergenic	Intergenic	-2554.0	NM_010902	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-27601642-2	chr3	27601542	27601742	+	573.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356953, intron 4 of 26)	intron (NM_001356953, intron 4 of 26)	-16647.0	NR_037275	100526525.0		NR_037275	ENSMUSG00000092695	Mir3092	mir-3092|mmu-mir-3092	microRNA 3092	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-176827648-4	chr1	176827554	176827754	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357390, intron 3 of 18)	intron (NM_001357390, intron 3 of 18)	8479.0	NR_037996	15365.0	Mm.441435	NR_037996		Hmga2-ps1	EG666235|Gm7996|Hmgic-ps1|[y]i-c	high mobility group AT-hook 2, pseudogene 1	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-103474066-2	chr14	103473966	103474166	+	624.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39275.0	NM_022886	64929.0	Mm.244003	NM_022886	ENSMUSG00000022123	Scel	9230114I02Rik	sciellin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-17460467-2	chr16	17460367	17460567	+	594.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001277231, intron 1 of 1)	B3|SINE|B2	8482.0	NM_007764	12929.0	Mm.21048	NM_007764	ENSMUSG00000006134	Crkl	1110025F07Rik|AA589403|AI325100|Crkol	v-crk avian sarcoma virus CT10 oncogene homolog-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-177840357-4	chr2	177840241	177840441	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024849)	promoter-TSS (NM_001024849)	-5.0	NM_001024849	329575.0	Mm.425123	NM_001024849	ENSMUSG00000095362	Gm14325	-	predicted gene 14325	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-10367009-2	chr17	10366909	10367109	+	597.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42407.0	NR_045461	76634.0	Mm.491052	NR_045461	ENSMUSG00000099384	1700110C19Rik	-	RIKEN cDNA 1700110C19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-45967692-3	chr16	45967590	45967790	+	772.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152226, intron 2 of 2)	intron (NR_152226, intron 2 of 2)	22084.0	NR_152227	100503378.0	Mm.387133	NR_152226	ENSMUSG00000085826	Gm15638	Gm41457	predicted gene 15638	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-16155386-3	chr2	16155246	16155446	+	672.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310455, intron 35 of 38)	L1MC4|LINE|L1	-200958.0	NM_026162	67448.0	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-67072467-4	chr14	67072397	67072597	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001205188)	promoter-TSS (NM_001205188)	-26.0	NM_001205188	71978.0	Mm.273997	NM_028032	ENSMUSG00000022052	Ppp2r2a	2410004D02Rik|mKIAA1541	protein phosphatase 2, regulatory subunit B, alpha	protein-coding	5.16288784001971	5.03377731068133	5.38915864643766	4.53368368937401	4.78943256919863	4.93583629849883	5.3370936598656	4.40188442890471	-0.192510568236503	0.580837180649744	0.966599221005409
Merged-chr11-86658041-4	chr11	86657940	86658140	+	901.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356531, intron 5 of 11)	B3|SINE|B2	13235.0	NM_001356531	75909.0	Mm.390398	NM_029478	ENSMUSG00000018171	Vmp1	3110098I04Rik|4930579A11Rik|AI787464|Tango5|Tmem49|mir-21a|ni-2	vacuole membrane protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-176223453-4	chr1	176223357	176223557	+	939.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357846, intron 1 of 8)	intron (NM_001357846, intron 1 of 8)	-9515.0	NM_001195816	319455.0	Mm.338001	NM_176916	ENSMUSG00000055214	Pld5	B230365F16Rik	phospholipase D family, member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-15714719-2	chr6	15714619	15714819	+	599.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVB4_1B-I_MM-int|LTR|ERVK	-5942.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-41594630-4	chr10	41594505	41594705	+	942.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358562, intron 30 of 47)	MIRb|SINE|MIR	26589.0	NR_045341	70538.0	Mm.399807	NR_045341	ENSMUSG00000091370	5730435O14Rik	-	RIKEN cDNA 5730435O14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-52098575-4	chr14	52098465	52098665	+	854.270874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360183, intron 1 of 8)	intron (NM_001360183, intron 1 of 8)	5456.0	NM_001360178	15381.0	Mm.427321	NM_016884	ENSMUSG00000060373	Hnrnpc	AL022939|D14Wsu171e|Hnrpc|Hnrpc1|Hnrpc2|hnRNPC1|hnRNPC2|hnrnp-C	heterogeneous nuclear ribonucleoprotein C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-43200742-1	chr2	43200642	43200842	+	542.0	f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-354583.0	NM_001289593	70789.0	Mm.105278	NM_027552	ENSMUSG00000026866	Kynu	4432411A05Rik	kynureninase (L-kynurenine hydrolase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69673817-2	chr11	69673717	69673917	+	959.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_030702, intron 10 of 10)	intron (NM_030702, intron 10 of 10)	-1394.0	NM_001159375	13681.0	Mm.26680	NM_144958	ENSMUSG00000059796	Eif4a1	BM-010|Ddx2a|Eif4	eukaryotic translation initiation factor 4A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-116973990-2	chr2	116973890	116974090	+	695.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	73838.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	1.73378677727929	1.92021316239092	2.11712229162583	2.16406029148824	1.74615225280816	1.93315880537906	2.13304667603577	2.17481955428826	0.0366936289945107	0.968214018242159	0.998431161219273
Merged-chr2-75705361-4	chr2	75705249	75705449	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010902)	promoter-TSS (NM_010902)	-686.0	NM_010902	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	4.2276450773201	4.60056650068639	4.78768570031289	4.24977720058602	3.97446317670348	3.37100929040658	3.66587129476361	3.45896253739534	-1.13432416487285	0.0102868490522568	0.111049980954344
Merged-chr2-167831144-2	chr2	167831044	167831244	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-101183.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70805075-4	chr8	70804979	70805179	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-3370.0	NM_008353	16161.0	Mm.731	NM_008353	ENSMUSG00000000791	Il12rb1	CD212|IL-12R[b]	interleukin 12 receptor, beta 1	protein-coding	5.0175775320481	5.10849587527925	5.06510154060017	4.97448374080434	4.64523523194758	4.84670040750858	3.88885380858907	4.1931854038967	-0.733964909229969	0.0392904210104926	0.282027223411168
Merged-chr9-14274687-2	chr9	14274587	14274787	+	971.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1614.0	NM_030261	75747.0	Mm.325126	NM_030261	ENSMUSG00000032009	Sesn3	5630400E15Rik|BC003348|SEST3	sestrin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-34145297-1	chr8	34145197	34145397	+	914.5	f1_balb.idr	intron (NM_026609, intron 1 of 3)	intron (NM_026609, intron 1 of 3)	1442.0	NM_026609	68192.0	Mm.34212	NM_026609	ENSMUSG00000031513	Leprotl1	1110067H13Rik|1520402O14Rik|AI854296	leptin receptor overlapping transcript-like 1	protein-coding	-0.17924952730403	0.0307456386530642	0.504506263811871	-0.172953178012934	0.395797435581987	-0.163142228306822	-0.168078334542881	-0.172290783995561	-0.608590898002092	0.797716170548927	1
Merged-chr4-146485614-2	chr4	146485514	146485714	+	825.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16386.0	NM_001243138	100041433.0	Mm.441741	NM_001243138	ENSMUSG00000056300	Zfp981	Gm13247	zinc finger protein 981	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69917269-2	chr11	69917169	69917369	+	872.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001357906)	TTS (NM_001357906)	3235.0	NM_019726	56310.0	Mm.477738	NM_019726	ENSMUSG00000023170	Gps2	AI505953|GPS-2	G protein pathway suppressor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70701925-2	chr11	70701825	70702025	+	653.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153103, intron 1 of 22)	intron (NM_153103, intron 1 of 22)	1377.0	NM_153103	16562.0	Mm.99996	NM_153103	ENSMUSG00000020821	Kif1c	B430105J22Rik|D11Bwg1349e|Ltxs1|Orch3	kinesin family member 1C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-47193900-4	chr13	47193811	47194011	+	993.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001170643)	promoter-TSS (NM_001170643)	-92.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-25570841-4	chr17	25570748	25570948	+	877.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045176)	promoter-TSS (NR_045176)	37.0	NR_045176	72834.0	Mm.33042	NR_045176	ENSMUSG00000091475	2810468N07Rik	-	RIKEN cDNA 2810468N07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-108726575-4	chr3	108726469	108726669	+	983.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-4270.0	NM_029522	76123.0	Mm.226941	NM_029522	ENSMUSG00000027883	Gpsm2	6230410J09Rik|LGN|Pins	G-protein signalling modulator 2 (AGS3-like, C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-109044225-2	chr7	109044125	109044325	+	621.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001311161, intron 5 of 5)	intron (NM_001311161, intron 5 of 5)	33345.0	NM_021885	22141.0	Mm.439722	NM_021885	ENSMUSG00000031028	Tub	rd5|tub	tubby bipartite transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-25357941-4	chr2	25357842	25358042	+	969.383301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1610.0	NM_031843	83768.0	Mm.21440	NM_031843	ENSMUSG00000026958	Dpp7	DPPII|Dpp2|QPP	dipeptidylpeptidase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-57149741-2	chr17	57149641	57149841	+	634.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011617)	promoter-TSS (NM_011617)	36.0	NM_011617	21948.0	Mm.42228	NM_011617	ENSMUSG00000019489	Cd70	CD27LG|Cd27l|Tnfsf7|Tnlg8a	CD70 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69097131-4	chr11	69097012	69097212	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1837.0	NM_011065	18626.0	Mm.7373	NM_011065	ENSMUSG00000020893	Per1	Hftm|Per|m-rigui|mPer1	period circadian clock 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-78895853-4	chr7	78895752	78895952	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162939)	promoter-TSS (NM_001162939)	-75.0	NM_026531	68048.0	Mm.34109	NM_026531	ENSMUSG00000030609	Aen	2700083B06Rik|Isg20l1	apoptosis enhancing nuclease	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-59207823-4	chr2	59207703	59207903	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 1 of 20)	intron (NM_175464, intron 1 of 20)	46953.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122285842-3	chr5	122285740	122285940	+	955.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177242, intron 1 of 5)	intron (NM_177242, intron 1 of 5)	1442.0	NM_177242	320717.0	Mm.489670	NM_177242	ENSMUSG00000038582	Pptc7	9130017A15Rik|AA672638|AI848390|TA-PP2C	PTC7 protein phosphatase homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80015563-4	chr7	80015467	80015667	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9247.0	NM_001145999	209225.0	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-67116105-4	chr18	67116000	67116200	+	820.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177137, intron 1 of 11)	intron (NM_177137, intron 1 of 11)	-17460.0	NM_010307	14680.0	Mm.440746	NM_010307	ENSMUSG00000024524	Gnal	2610011C15Rik|9630020G10Rik|Galphaolf|Gna10|Golf	guanine nucleotide binding protein, alpha stimulating, olfactory type	protein-coding	4.01548824799439	4.10722123469293	3.97188657912036	3.63442929899928	4.88461630967014	4.70388206904887	3.26798933830015	4.43595567479716	0.680466441051099	0.146048547188137	0.596296396331935
Merged-chr15-59730314-2	chr15	59730214	59730414	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	64645.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-59683623-2	chr16	59683523	59683723	+	666.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_007938, intron 14 of 17)	intron (NM_007938, intron 14 of 17)	-44214.0	NM_001347244	56297.0	Mm.392505	NM_019665	ENSMUSG00000022722	Arl6	1110018H24Rik|2210411E14Rik|BBS3	ADP-ribosylation factor-like 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-66477445-6	chr18	66477298	66477498	+	884.319458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	18794.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-12230163-4	chr18	12230042	12230242	+	988.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008720, intron 1 of 24)	intron (NM_008720, intron 1 of 24)	6244.0	NM_008720	18145.0	Mm.3484	NM_008720	ENSMUSG00000024413	Npc1	A430089E03Rik|C85354|D18Ertd139e|D18Ertd723e|lcsd|nmf164|spm	NPC intracellular cholesterol transporter 1	protein-coding	4.67694421836403	4.09384540544436	4.43271652457545	2.61084378096775	6.19349767609961	5.95684396611709	6.30950665710935	5.4340643737918	2.17177272927055	2.45610531249445e-08	2.58494311748319e-06
Merged-chr13-113949953-4	chr13	113949815	113950015	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172595, intron 3 of 4)	intron (NM_172595, intron 3 of 4)	155407.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-77828708-4	chr9	77828568	77828768	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Rod|LINE|L1	74133.0	NM_010295	14629.0	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-5444414-3	chr11	5444301	5444501	+	873.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001080924, exon 1 of 9)	exon (NM_001080924, exon 1 of 9)	446.0	NM_001080924	407821.0	Mm.216313	NM_001080924	ENSMUSG00000041961	Znrf3	Gm1167	zinc and ring finger 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134922964-4	chr6	134922864	134923064	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009875, intron 2 of 2)	intron (NM_009875, intron 2 of 2)	2563.0	NM_009875	12576.0	Mm.2958	NM_009875	ENSMUSG00000003031	Cdkn1b	AA408329|AI843786|Kip1|p27|p27Kip1	cyclin-dependent kinase inhibitor 1B	protein-coding	4.454513008703	3.3767469199772	3.83377168349329	4.37709795132942	4.20180055188918	3.99552763182847	4.26514766496309	4.79367375198918	0.344138693802193	0.44432656060055	0.912265842646861
Merged-chr6-87887845-4	chr6	87887733	87887933	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017477)	promoter-TSS (NM_017477)	-107.0	NM_017477	54161.0	Mm.258785	NM_017477	ENSMUSG00000030058	Copg1	AU019265|BC056168|Copg|D6Ertd71e|D6Wsu16e	coatomer protein complex, subunit gamma 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35915189-1	chr17	35915089	35915289	+	839.0	f1_c57bl6.idr	intron (NM_001361455, intron 1 of 5)	B2_Mm1t|SINE|B2	1251.0	NM_001361455	66973.0	Mm.29484	NM_025878	ENSMUSG00000024436	Mrps18b	2400002C15Rik|MRP-S18-2|S18mt-b	mitochondrial ribosomal protein S18B	protein-coding	2.13318723549154	2.73479276171797	1.36880938377252	2.06355920653014	1.46351330974418	1.81345519685084	1.37812367565984	1.53381602874887	-1.73177486298002	0.0932945890084587	0.473260126816789
Merged-chr15-36760845-2	chr15	36760745	36760945	+	788.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	30087.0	NM_001253807	22631.0	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-103802383-4	chr3	103802268	103802468	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040412)	promoter-TSS (NR_040412)	-761.0	NR_040412	100503157.0	Mm.445554	NR_040412	ENSMUSG00000084997	Gm15471	-	predicted gene 15471	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-75817714-3	chr12	75817601	75817801	+	985.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001005510)	promoter-TSS (NM_001005510)	-617.0	NM_001005510	319565.0	Mm.26652	NM_001005510	ENSMUSG00000063450	Syne2	6820443O06Rik|AW546258|Cpfl8|D12Ertd777e|KASH2|NUA|Nesp2g|dice|mKIAA1011	spectrin repeat containing, nuclear envelope 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-54163024-4	chr6	54162938	54163138	+	956.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163640, intron 1 of 12)	intron (NM_001163640, intron 1 of 12)	-101820.0	NM_001311133	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	4.25333312665798	4.33609508530929	3.17045868676741	4.28782873950185	3.03637166795994	4.12345756870881	3.06963950798199	4.4387618028763	-0.384276520387857	0.479566631426825	0.92813858111502
Merged-chr9-41072312-4	chr9	41072207	41072407	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176860, intron 1 of 13)	intron (NM_176860, intron 1 of 13)	7199.0	NM_001357412	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	3.56670353715194	4.17186424787882	1.54464740058221	3.2492556265705	2.25886084681058	2.86735428736139	2.88949148975724	2.90490235607906	-1.11191851261561	0.143307528949002	0.59126675802274
Merged-chr10-118102174-4	chr10	118102132	118102332	+	951.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39555.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-22866061-3	chr2	22865953	22866153	+	862.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019456, intron 10 of 13)	intron (NM_019456, intron 10 of 13)	-29469.0	NM_019501	56075.0	Mm.249752	NM_019501	ENSMUSG00000026784	Pdss1	2610203G20Rik|2700031G06Rik|TPT|TPT 1|Tprt|mDLP1|mSPS1	prenyl (solanesyl) diphosphate synthase, subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-142020152-4	chr4	142020041	142020241	+	749.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131014, intron 1 of 1)	B4A|SINE|B4	2243.0	NR_131014	78917.0	Mm.139995	NR_131014	ENSMUSG00000085761	4930455G09Rik	-	RIKEN cDNA 4930455G09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41319821-2	chr19	41319721	41319921	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 8 of 16)	intron (NM_031376, intron 8 of 16)	-55817.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166030388-4	chr2	166030268	166030468	+	988.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008679, intron 1 of 22)	intron (NM_008679, intron 1 of 22)	37731.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	3.03152882254736	2.10356598104171	1.49176131849414	3.59265658540592	3.68632475220344	2.33303408666756	2.42339019240893	3.86133750424566	0.751048658636567	0.364473364069886	0.860252738775834
Merged-chr7-46179897-2	chr7	46179797	46179997	+	549.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001357538, exon 1 of 39)	exon (NM_001357538, exon 1 of 39)	136.0	NM_001357538	20927.0	Mm.259076	NM_011510	ENSMUSG00000040136	Abcc8	D930031B21Rik|SUR1|Sur	ATP-binding cassette, sub-family C (CFTR/MRP), member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-75212071-4	chr10	75211969	75212169	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145826)	promoter-TSS (NM_001145826)	-4.0	NM_153406	74392.0	Mm.27716	NM_153406	ENSMUSG00000033444	Specc1l	4930470P14Rik|4932439K10Rik|9530057A13Rik|AI317249|Cytsa|mKIAA0376	sperm antigen with calponin homology and coiled-coil domains 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-44659080-1	chr18	44658980	44659180	+	658.0	f0_balb.idr	intron (NM_001085373, intron 3 of 18)	intron (NM_001085373, intron 3 of 18)	-2585.0	NR_026853	626275.0	Mm.427116	NR_026853	ENSMUSG00000097610	A930012L18Rik	-	RIKEN cDNA A930012L18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-25773944-4	chr15	25773849	25774049	+	998.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001353141)	promoter-TSS (NM_001353141)	-64.0	NM_001353141	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133194651-2	chr4	133194551	133194751	+	731.083374	f1_balb.idr|f1_c57bl6.idr	exon (NM_153423, exon 8 of 9)	exon (NM_153423, exon 8 of 9)	-1004.0	NR_105984	102466215.0		NR_105984	ENSMUSG00000099202	Mir7017	Gm27945|mmu-mir-7017	microRNA 7017	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-79504384-2	chr15	79504284	79504484	+	571.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008427, intron 1 of 1)	intron (NM_008427, intron 1 of 1)	857.0	NM_008427	16520.0	Mm.39759	NM_008427	ENSMUSG00000044216	Kcnj4	IRK3|Kcnf2|MB-IRK3	potassium inwardly-rectifying channel, subfamily J, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84210651-3	chr8	84210542	84210742	+	900.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_172503)	TTS (NM_172503)	-1735.0	NR_037294	100526528.0		NR_037294	ENSMUSG00000105458	Mir3074-2	mir-3074-2|mmu-mir-3074-2	microRNA 3074-2	ncRNA	4.10187357900186	2.62722654158946	1.62897506264822	3.47660292590588	3.32701339167837	2.64829115082538	3.67154192191231	3.5617913025702	0.125126249277132	0.865355326194367	0.998431161219273
Merged-chr8-70343920-3	chr8	70343845	70344045	+	859.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030680, intron 2 of 23)	intron (NM_030680, intron 2 of 23)	9334.0	NM_030680	19704.0	Mm.258280	NM_030680	ENSMUSG00000058301	Upf1	B430202H16Rik|NORF1|PNORF-1|Rent1|Upflp	UPF1 regulator of nonsense transcripts homolog (yeast)	protein-coding	-1.84446540621454	-1.66703209084435	-1.82297003008319	-1.83062437091832	-1.84230234211872	-1.6650127732569	-1.82086056797065	-1.82925424756847	0.037684011990387	0.991491645451152	1
Merged-chr8-43443077-4	chr8	43442976	43443176	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	85061.0	NM_001009547	382007.0	Mm.55952	NM_001009547	ENSMUSG00000063900	Adam26b	-	a disintegrin and metallopeptidase domain 26B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101911429-2	chr7	101911329	101911529	+	830.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_025605, exon 5 of 5)	3' UTR (NM_025605, exon 5 of 5)	-5070.0	NM_001081679	791260.0	Mm.475469	NM_001081679	ENSMUSG00000078630	Tomt	Comt2|F930017I19Rik	transmembrane O-methyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-118111226-4	chr2	118111133	118111333	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011580)	promoter-TSS (NM_011580)	-31.0	NR_126479	329496.0	Mm.235844	NR_126479	ENSMUSG00000087203	Gm13986	C230060E24	predicted gene 13986	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-42550004-2	chr2	42549904	42550104	+	745.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_053011, intron 1 of 90)	Lx8|LINE|L1	-102436.0	NR_105754	102465171.0		NR_105754	ENSMUSG00000098660	Mir6336	Gm27584|mmu-mir-6336	microRNA 6336	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-84772103-6	chr12	84771962	84772162	+	820.138916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023409, intron 1 of 3)	intron (NM_023409, intron 1 of 3)	1050.0	NM_023409	67963.0	Mm.282556	NM_023409	ENSMUSG00000021242	Npc2	2700012J19Rik|AA408070|AU045843|HE1	NPC intracellular cholesterol transporter 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-32113672-4	chr17	32113567	32113767	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22244.0	NR_027316	435518.0	Mm.328944	NR_027316	ENSMUSG00000002791	Pdxk-ps	Gm9743	pyridoxal (pyridoxine, vitamin B6) kinase, pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-183298193-4	chr1	183298070	183298270	+	856.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027861)	promoter-TSS (NM_027861)	-877.0	NR_151660	71678.0	Mm.392270	NM_027861	ENSMUSG00000046836	Brox	0610010K06Rik	BRO1 domain and CAAX motif containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47595707-4	chr17	47595610	47595810	+	984.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081635, intron 4 of 6)	intron (NM_001081635, intron 4 of 6)	2243.0	NM_007632	12445.0	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19147819-2	chr7	19147719	19147919	+	884.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_026111, intron 2 of 6)	intron (NM_026111, intron 2 of 6)	1377.0	NM_026111	67369.0	Mm.234876	NM_026111	ENSMUSG00000030407	Qpctl	1810019P04Rik|BB101812|gQC	glutaminyl-peptide cyclotransferase-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-24254725-4	chr7	24254658	24254858	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018791)	promoter-TSS (NM_018791)	-36.0	NM_018791	54678.0	Mm.468052	NM_018791	ENSMUSG00000030486	Zfp108	-	zinc finger protein 108	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-51048075-3	chr14	51048022	51048222	+	926.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	2041.0	NM_001011877	497113.0	Mm.379741	NM_001011877	ENSMUSG00000059648	Rnase11	Raj1	ribonuclease, RNase A family, 11 (non-active)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-87130265-4	chr6	87130163	87130363	+	886.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	25517.0	NM_001167937	52372.0	Mm.282851	NM_001167937	ENSMUSG00000090891	D6Ertd527e	AU043841	DNA segment, Chr 6, ERATO Doi 527, expressed	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-24396389-2	chr5	24396289	24396489	+	784.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029020, intron 1 of 15)	B2_Mm1a|SINE|B2	2233.0	NM_029020	74610.0	Mm.283914	NM_029020	ENSMUSG00000028973	Abcb8	4833412N02Rik|AA409895	ATP-binding cassette, sub-family B (MDR/TAP), member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116658009-4	chr11	116657906	116658106	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163318, intron 2 of 4)	intron (NM_001163318, intron 2 of 4)	898.0	NM_001163318	100038570.0	Mm.390349	NM_001163318	ENSMUSG00000075410	Prcd	Gm11744	photoreceptor disc component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-121498097-4	chr10	121497997	121498197	+	865.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21847.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	1.58202852239109	1.81657734742548	0.761569146668704	1.25909539713544	0.734893717362268	1.50397992759823	0.764672247844042	1.12214356365337	-1.33580748333571	0.355914053751305	0.853664850644233
Merged-chr1-82288746-2	chr1	82288646	82288846	+	546.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_010570, exon 1 of 2)	exon (NM_010570, exon 1 of 2)	2693.0	NM_010570	16367.0	Mm.4952	NM_010570	ENSMUSG00000055980	Irs1	G972R|IRS-1	insulin receptor substrate 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-129006408-4	chr5	129006304	129006504	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152615, intron 1 of 11)	B3|SINE|B2	2168.0	NR_152615	13852.0	Mm.260716	NM_007941	ENSMUSG00000029428	Stx2	AW538950|Epim|G1-536-1|Syn-2|repro34	syntaxin 2	protein-coding	5.55994813809402	4.12469981640715	4.53552350362139	4.64309245916171	4.07530439661457	4.98814347543091	3.56916859611121	4.85923923342258	-0.433682966553055	0.340131714739619	0.840844844803424
Merged-chr2-25622031-4	chr2	25621931	25622131	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001109993)	promoter-TSS (NM_001109993)	-26.0	NM_001109993	51875.0	Mm.271147	NM_001040130	ENSMUSG00000026939	Tmem141	1110065P14Rik|AI663999|D2Ertd217e	transmembrane protein 141	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-39619503-4	chr18	39619408	39619608	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-132263.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-25487078-4	chr18	25487011	25487211	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362310, intron 11 of 12)	C-rich|Low_complexity|Low_complexity	192637.0	NM_001362337	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129086304-3	chr4	129086207	129086407	+	641.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19223.0	NM_025452	66260.0	Mm.25295	NM_025452	ENSMUSG00000028786	Tmem54	1810017F10Rik|AI507302	transmembrane protein 54	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-48397457-2	chr6	48397357	48397557	+	619.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001362145, intron 1 of 15)	intron (NM_001362145, intron 1 of 15)	1871.0	NM_001362144	77827.0	Mm.107646	NM_133922	ENSMUSG00000042810	Krba1	A930040G15Rik|AI448780	KRAB-A domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-10839332-2	chr8	10839232	10839432	+	782.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	43122.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-31544367-3	chr10	31544260	31544460	+	653.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146349, intron 1 of 5)	L1M5|LINE|L1	65365.0	NM_001146349	268291.0	Mm.295212	NM_001146349	ENSMUSG00000063760	Rnf217	AU016819|Ibrdc1	ring finger protein 217	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-119489949-2	chr6	119489849	119490049	+	619.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_009525, intron 1 of 4)	intron (NM_009525, intron 1 of 4)	10281.0	NM_133940	101358.0	Mm.125477	NM_133940	ENSMUSG00000030019	Fbxl14	AW322056|Fbx14l	F-box and leucine-rich repeat protein 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-112578312-1	chr13	112578212	112578412	+	564.0	f1_c57bl6.idr	intron (NM_139299, intron 1 of 16)	LSU-rRNA_Hsa|rRNA|rRNA	2350.0	NM_139299	218624.0	Mm.380801	NM_139299	ENSMUSG00000050377	Il31ra	CRL3|GLM-R|GPL|Glmr|NR10	interleukin 31 receptor A	protein-coding	-0.821111106744396	-0.942412314892532	-0.639488703810661	-0.953847385766075	-0.956581654110682	-0.939920007031895	-0.63269833176779	-0.953508276140667	-0.406865952468977	0.890844459934752	1
Merged-chr11-50025644-3	chr11	50025584	50025784	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290750, intron 1 of 7)	CpG	353.0	NM_001290750	59044.0	Mm.359004	NM_021540	ENSMUSG00000020376	Rnf130	2510042A13Rik|G1RZFP|G1rp|GOLIATH|GP	ring finger protein 130	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-26917029-4	chr2	26916917	26917117	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013677)	promoter-TSS (NM_013677)	-487.0	NM_013677	20930.0	Mm.347512	NM_013677	ENSMUSG00000015790	Surf1	0610010F23Rik|Surf-1	surfeit gene 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-106443786-3	chr8	106443685	106443885	+	667.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28446.0	NM_011764	22751.0	Mm.295582	NM_011764	ENSMUSG00000031907	Zfp90	6430515L01Rik|KRAB17|NK10|Zfp64|Zfp83|mKIAA1954	zinc finger protein 90	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83658982-4	chr11	83658884	83659084	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3600.0	NM_013652	20303.0	Mm.244263	NM_013652	ENSMUSG00000018930	Ccl4	AT744.1|Act-2|MIP-1B|Mip1b|Scya4	chemokine (C-C motif) ligand 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124838038-2	chr6	124837938	124838138	+	773.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013530, intron 3 of 9)	intron (NM_013530, intron 3 of 9)	2237.0	NM_013530	14695.0	Mm.68889	NM_013530	ENSMUSG00000023439	Gnb3	Gnb-3	guanine nucleotide binding protein (G protein), beta 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-10877848-3	chr15	10877760	10877960	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	48809.0	NR_040357	100502601.0	Mm.399434	NR_040357		Gm19276	-	predicted gene, 19276	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-17356468-4	chr19	17356401	17356601	+	747.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010265, intron 1 of 2)	CpG	166.0	NM_173442	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	2.58788527928939	2.66560317255917	2.23071118138628	4.41375360378407	1.62963849122594	3.45951196300101	3.17016931158804	2.63590073179778	-0.688189096925597	0.394906161727313	0.882837719236596
Merged-chr10-81352217-2	chr10	81352117	81352317	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1760.0	NM_001163166	15353.0	Mm.38474	NM_010440	ENSMUSG00000020232	Hmg20b	AW610687|BRAF35|Hmgx2|Hmgxb2|Smarce1r	high mobility group 20B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34105028-4	chr17	34104944	34105144	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	-9735.0	NR_046183	414076.0	Mm.473092	NR_046183	ENSMUSG00000098197	BC051537	-	cDNA sequence BC051537	ncRNA	4.34892892432355	5.02812707139741	4.49894975148081	4.8987116451814	4.15279489697878	4.5699504493747	3.64656927965227	3.8629144281846	-0.794945264084586	0.0519008659031124	0.33335470508862
Merged-chr11-48785653-2	chr11	48785553	48785753	+	583.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	-14707.0	NM_008143	14694.0	Mm.5305	NM_008143	ENSMUSG00000020372	Rack1	AL033335|GB-like|Gnb2-rs1|Gnb2l1|p205	receptor for activated C kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-105875596-3	chr5	105875506	105875706	+	896.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018759)	promoter-TSS (NM_018759)	-962.0	NR_030777	54367.0	Mm.248876	NM_018759	ENSMUSG00000029290	Zfp326	5730470H14Rik|ZAN75|Znf326	zinc finger protein 326	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-40192734-3	chr10	40192650	40192850	+	701.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50496.0	NM_001114332	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-6459519-4	chr18	6459397	6459597	+	988.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007935, intron 2 of 13)	intron (NM_007935, intron 2 of 13)	31149.0	NR_035446	100316773.0		NR_035446	ENSMUSG00000084514	Mir1893	Mirn1893|mmu-mir-1893	microRNA 1893	ncRNA	3.13755848381886	3.19888465680896	3.78975933800583	2.71534326351103	2.0700493461406	2.66095098691324	2.42186732066073	2.18126935411708	-1.73930459287768	0.014125922407026	0.138996296095815
Merged-chr2-128420632-4	chr2	128420553	128420753	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028591, intron 1 of 1)	MER44B|DNA|TcMar-Tigger	8698.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	5.94993451456128	5.68548606514005	5.70790225144659	5.80016807268827	5.71390430804186	5.97907818427675	5.1313576041113	5.54769716071015	-0.190067032876068	0.471022463963003	0.92584289530549
Merged-chr17-62618848-1	chr17	62618748	62618948	+	543.0	f1_balb.idr	intron (NM_010109, intron 2 of 3)	intron (NM_010109, intron 2 of 3)	262469.0	NM_207654	13640.0	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55312011-4	chr19	55311916	55312116	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025883, intron 3 of 10)	intron (NM_025883, intron 3 of 10)	4020.0	NM_001360595	66980.0	Mm.386789	NM_025883	ENSMUSG00000024982	Zdhhc6	2400007G07Rik|5930409M18Rik|AI462345|C77369|DHHC-6	zinc finger, DHHC domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-148877100-3	chr2	148876957	148877157	+	805.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1545.0	NM_009976	13010.0	Mm.4263	NM_009976	ENSMUSG00000027447	Cst3	CysC	cystatin C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69518471-2	chr11	69518371	69518571	+	814.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081330, intron 7 of 85)	intron (NM_001081330, intron 7 of 85)	30637.0	NM_001081330	327954.0	Mm.247478	NM_177617	ENSMUSG00000005237	Dnah2	2900022L05Rik|4930564A01|D130094J20|D330014H01Rik|Dnahc2|Dnhd3	dynein, axonemal, heavy chain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-43748034-4	chr11	43747947	43748147	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133795)	promoter-TSS (NM_133795)	-74.0	NM_133795	66827.0	Mm.271974	NM_133795	ENSMUSG00000041278	Ttc1	4833412C19Rik|C79328|TPR1	tetratricopeptide repeat domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-149838985-3	chr4	149838892	149839092	+	654.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64725.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-104260533-2	chr9	104260433	104260633	+	916.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359740, intron 1 of 56)	intron (NM_001359740, intron 1 of 56)	2397.0	NM_001359740	235567.0	Mm.217256	NM_001163026	ENSMUSG00000032560	Dnajc13	D030002L11Rik|Gm1124|RME-8|Rme8|mKIAA0678	DnaJ heat shock protein family (Hsp40) member C13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-49399512-3	chr7	49399407	49399607	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175272, intron 4 of 37)	intron (NM_175272, intron 4 of 37)	153318.0	NM_175272	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-3349136-4	chr2	3349037	3349237	+	926.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145921, intron 3 of 7)	intron (NM_145921, intron 3 of 7)	12969.0	NM_030063	78245.0	Mm.99733	NM_030063	ENSMUSG00000026644	Acbd7	9230116B18Rik	acyl-Coenzyme A binding domain containing 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-3840097-4	chr10	3840026	3840226	+	911.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159942, intron 2 of 16)	intron (NM_001159942, intron 2 of 16)	-32541.0	NM_001033253	213783.0	Mm.150831	NM_001033253	ENSMUSG00000040624	Plekhg1	D10Ertd733e|Gm521|mKIAA1209	pleckstrin homology domain containing, family G (with RhoGef domain) member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-124707892-2	chr4	124707792	124707992	+	785.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_010213, exon 6 of 6)	exon (NM_010213, exon 6 of 6)	-6969.0	NM_029157	75062.0	Mm.25779	NM_029157	ENSMUSG00000028902	Sf3a3	4930512K19Rik|60kDa	splicing factor 3a, subunit 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-131545555-4	chr2	131545432	131545632	+	887.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_013460, exon 2 of 2)	3' UTR (NM_013460, exon 2 of 2)	16753.0	NM_013460	11550.0	Mm.389380	NM_013460	ENSMUSG00000027335	Adra1d	Adra-1|Adra1|Adra1a|Gpcr8|Spr8|[a]1d|alpha1D-AR	adrenergic receptor, alpha 1d	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-172633062-4	chr1	172632926	172633126	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026725)	promoter-TSS (NM_026725)	-52.0	NM_026725	68440.0	Mm.33024	NM_026725	ENSMUSG00000026544	Dusp23	1300005N15Rik|LDP-3	dual specificity phosphatase 23	protein-coding	7.50286296010822	6.98481011383835	7.41625891214558	7.06447592829567	7.07713825965792	6.90593737216363	7.61579267177141	6.86789234882382	-0.118852554868577	0.548561962928694	0.958294539645345
Merged-chr3-67564909-4	chr3	67564832	67565032	+	716.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17836.0	NM_025813	66868.0	Mm.491153	NM_025813	ENSMUSG00000027775	Mfsd1	1200003O06Rik	major facilitator superfamily domain containing 1	protein-coding	1.76128152038651	3.44402109708519	1.82632138512735	0.986560881008603	0.924189570366468	0.753958567834929	0.719787115468846	0.993957281148175	-4.38745348893916	0.00155683634208269	0.0278512759925071
Merged-chr6-113850023-4	chr6	113849915	113850115	+	930.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009723, intron 3 of 21)	intron (NM_009723, intron 3 of 21)	41524.0	NM_001036684	11941.0	Mm.321755	NM_009723	ENSMUSG00000030302	Atp2b2	D6Abb2e|Gena300|PMCA2|Tmy|dfw|jog|wms|wri	ATPase, Ca++ transporting, plasma membrane 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-84504480-4	chr2	84504391	84504591	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_046046, intron 1 of 2)	MTEa|LTR|ERVL-MaLR	2382.0	NR_046046	672763.0	Mm.491046	NR_046046	ENSMUSG00000087362	Gm13710	-	predicted gene 13710	ncRNA	4.31107749203292	4.78941584140223	5.12039561236219	4.56856653693085	3.67652139516252	4.2721195645603	4.19957645732368	4.25103993017542	-0.785617663183208	0.0496920044218245	0.325019360048969
Merged-chr5-122051673-4	chr5	122051588	122051788	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1837.0	NM_001312908	13048.0	Mm.156172	NM_007804	ENSMUSG00000042589	Cux2	1700051K22Rik|Cutl2|Cux-2	cut-like homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-101694130-3	chr13	101694101	101694301	+	749.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077495, intron 7 of 15)	intron (NM_001077495, intron 7 of 15)	-1571.0	NM_001024955	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	-0.201465084241916	-0.345668718160182	-0.514609491869621	-0.376941060903224	-0.519488597186904	-0.341687515850698	-0.514024102424464	-0.374562067453019	-1.12784762433907	0.635677940601284	1
Merged-chr7-100707651-1	chr7	100707551	100707751	+	928.0	f1_c57bl6.idr	intron (NM_001362170, intron 1 of 7)	intron (NM_001362170, intron 1 of 7)	1016.0	NM_001362170	319604.0	Mm.260362	NM_178764	ENSMUSG00000029461	Fam168a	2610030B18Rik|B930006L02Rik|mKIAA0280	family with sequence similarity 168, member A	protein-coding	-2.18361151404719	-2.02201993626881	-2.16403530460334	-2.1710062446989	-2.18164157430194	-2.15370992785044	-2.16211418110791	-2.16975844975469	-0.683654500252594	0.846597994014493	1
Merged-chr13-28513182-3	chr13	28513116	28513316	+	877.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045053, intron 7 of 8)	intron (NR_045053, intron 7 of 8)	197657.0	NR_105787	102466635.0		NR_105787	ENSMUSG00000099158	Mir6368	Gm27800|mmu-mir-6368	microRNA 6368	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-86929153-4	chr10	86929075	86929275	+	947.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138673, intron 25 of 68)	intron (NM_138673, intron 25 of 68)	78767.0	NM_138673	192188.0	Mm.279611	NM_138673	ENSMUSG00000035459	Stab2	FEEL-2|FELL|MFEEL-2|STAB-2	stabilin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-108074385-2	chr11	108074304	108074504	+	664.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011101, intron 3 of 16)	Lx8|LINE|L1	77556.0	NR_106082	102465705.0		NR_106082	ENSMUSG00000098989	Mir7223	Gm28009|mmu-mir-7223	microRNA 7223	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-90494960-2	chr3	90494860	90495060	+	952.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3947.0	NM_133854	20615.0	Mm.331182	NM_133854	ENSMUSG00000001018	Snapin	25kDa|AA407989|AV026596|Bloc1s7|Snap25bp|Snapap	SNAP-associated protein	protein-coding	-0.366626417179347	-0.352692175281507	-0.357249875608969	0.28625245588711	-0.365754612910758	-0.35166575818681	-0.356244039914784	0.294119739107777	0.0282770312316891	0.991511101680898	1
Merged-chr8-25018022-4	chr8	25017905	25018105	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027194, intron 1 of 3)	intron (NM_027194, intron 1 of 3)	794.0	NM_027194	69742.0	Mm.28626	NM_027194	ENSMUSG00000031556	Tm2d2	2410018G23Rik|Blp1	TM2 domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-120956444-4	chr6	120956364	120956564	+	923.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001270475, intron 27 of 31)	intron (NM_001270475, intron 27 of 31)	-2380.0	NR_138099	215458.0	Mm.122399	NR_138099		LOC215458	-	uncharacterized LOC215458	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-60825002-4	chr15	60824926	60825126	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162926)	promoter-TSS (NM_001162926)	54.0	NM_001162926	399603.0	Mm.411968	NM_207269	ENSMUSG00000072568	Fam84b	BF642811|D330050I23Rik	family with sequence similarity 84, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129314552-1	chr2	129314452	129314652	+	622.0	f1_c57bl6.idr	Intergenic	Intergenic	-4580.0	NM_010554	16175.0	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	3.3673811432328	2.96896562629627	1.51757611247656	1.47320865849133	2.65295850465302	2.2016207877522	1.52990437391589	1.70263113620843	-1.03635157312934	0.28908057490217	0.794651459678379
Merged-chr15-27629134-2	chr15	27629034	27629234	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013792, intron 1 of 6)	intron (NM_001013792, intron 1 of 6)	1559.0	NM_001013792	432940.0	Mm.309164	NM_001013792	ENSMUSG00000046034	Otulin	C79097|Fam105b|m3Sapc|m7-1Sapc	OTU deubiquitinase with linear linkage specificity	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-40897115-1	chr17	40897015	40897215	+	707.0	f1_balb.idr	Intergenic	Intergenic	-16557.0	NM_027834	71583.0	Mm.158733	NM_027834	ENSMUSG00000054951	9130008F23Rik	-	RIKEN cDNA 9130008F23 gene	protein-coding	3.16739317310905	3.31445189875021	1.59629378733379	2.75123164039343	2.90591381049957	2.95218813816063	3.23025402838555	2.86895620169654	0.235321087431283	0.749132096848026	0.998431161219273
Merged-chr13-52189720-4	chr13	52189598	52189798	+	993.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	92957.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-100458344-3	chr15	100458461	100458661	+	807.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10450.0	NM_001357983	68614.0	Mm.275272	NM_134093	ENSMUSG00000037353	Letmd1	1110019O13Rik|AI593524|BB130465|BB235638|HCCR-2|HCCR1|MCC-32|Mccr	LETM1 domain containing 1	protein-coding	-1.8429182434137	-1.8129848525291	-1.82203695700074	-1.54461076807193	-1.84081697472045	-1.81102322372834	-1.81998775896484	-1.82814164409203	-1.43114970378833	0.684630132144154	1
Merged-chr16-65371136-4	chr16	65371049	65371249	+	852.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-149480.0	NM_008849	18736.0	Mm.355440	NM_008849	ENSMUSG00000004842	Pou1f1	GHF-1|Hmp1|Pit-1|Pit1|Pit1-rs1|dw|dwarf	POU domain, class 1, transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-66930521-4	chr15	66930416	66930616	+	742.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008681, exon 16 of 16)	3' UTR (NM_008681, exon 16 of 16)	39123.0	NM_018865	22402.0	Mm.10222	NM_018865	ENSMUSG00000005124	Wisp1	AW146261|CCN4|Elm1	WNT1 inducible signaling pathway protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-44465573-3	chr10	44465492	44465692	+	742.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6844.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167910227-2	chr2	167910127	167910327	+	817.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22100.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65543672-2	chr9	65543572	65543772	+	825.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	36415.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-46198963-4	chr18	46198881	46199081	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001170855)	promoter-TSS (NM_001170855)	-163.0	NM_001170855	28105.0	Mm.277382	NM_178872	ENSMUSG00000033949	Trim36	D18Wsu100e|haprin	tripartite motif-containing 36	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80305590-2	chr10	80305490	80305690	+	722.833374	f1_balb.idr|f1_c57bl6.idr	exon (NM_011789, exon 7 of 14)	exon (NM_011789, exon 7 of 14)	3770.0	NM_011789	23805.0	Mm.57247	NM_011789	ENSMUSG00000020135	Apc2	AI852447|APCL|R75424	adenomatosis polyposis coli 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-143757120-4	chr7	143757033	143757233	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9860.0	NM_203492	381974.0	Mm.297839	NM_203492	ENSMUSG00000050276	Mrgprg	Gm1098|Mrgg	MAS-related GPR, member G	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-125368608-6	chr5	125368505	125368705	+	772.230591	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	21412.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-45912929-1	chr1	45912829	45913029	+	684.0	f0_balb.idr	intron (NM_016917, intron 5 of 7)	URR1A|DNA|hAT-Charlie	12665.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-123591418-4	chr4	123591316	123591516	+	841.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199137, intron 1 of 92)	MTC|LTR|ERVL-MaLR	-25004.0	NR_105824	102465214.0		NR_105824	ENSMUSG00000099005	Mir6398	Gm27657|mmu-mir-6398	microRNA 6398	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-32400111-4	chr3	32399974	32400174	+	925.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34409.0	NM_009517	22401.0	Mm.35705	NM_009517	ENSMUSG00000027663	Zmat3	Wig1	zinc finger matrin type 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-59728102-4	chr9	59727977	59728177	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20313.0	NM_001033498	546134.0	Mm.297580	NM_001033498	ENSMUSG00000074259	Gramd2	BC064463|Gramd2a	GRAM domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-32912013-3	chr11	32911905	32912105	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1K|LTR|ERVL-MaLR	-87411.0	NM_027050	69351.0	Mm.65488	NM_027050	ENSMUSG00000020270	Smim23	1700008A04Rik	small integral membrane protein 23	protein-coding	0.70806170818736	0.785409485096674	0.761275550143729	0.741895491381453	2.56386880698139	1.50508913159671	2.16261261052143	1.5381593220984	5.50705950538654	0.000117426475281204	0.00348158859248078
Merged-chr9-8017436-3	chr9	8017332	8017532	+	924.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12836.0	NM_001171147	22601.0	Mm.221992	NM_009534	ENSMUSG00000053110	Yap1	AI325207|Yap|Yap65|Yki|Yorkie	yes-associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-34346985-2	chr15	34346885	34347085	+	577.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358780, intron 3 of 18)	Lx4A|LINE|L1	10887.0	NM_001256161	77358.0	Mm.402759	NM_001256161	ENSMUSG00000094447	9430069I07Rik	-	RIKEN cDNA 9430069I07 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-40930116-2	chr14	40930016	40930216	+	689.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145928, intron 2 of 8)	L1MB2|LINE|L1	18093.0	NM_001316748	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131084427-4	chr1	131084324	131084524	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008551, intron 1 of 9)	intron (NM_008551, intron 1 of 9)	13419.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-118849147-3	chr7	118849023	118849223	+	785.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168219, intron 2 of 3)	intron (NM_001168219, intron 2 of 3)	6490.0	NM_001168220	66356.0	Mm.482278	NM_023197	ENSMUSG00000030980	Knop1	2310008H09Rik|Tsg118	lysine rich nucleolar protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-128012872-2	chr1	128012772	128012972	+	810.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285945, intron 8 of 20)	intron (NM_001285945, intron 8 of 20)	89599.0	NM_027678	226409.0	Mm.425048	NM_027678	ENSMUSG00000036086	Zranb3	4933425L19Rik|AH2|AI316834|C730006D09	zinc finger, RAN-binding domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-148592164-3	chr4	148592185	148592385	+	820.1904910000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009272, intron 2 of 6)	intron (NM_009272, intron 2 of 6)	772.0	NM_009272	20810.0	Mm.10	NM_009272	ENSMUSG00000006442	Srm	AA407669|SpdST|SpdSy	spermidine synthase	protein-coding	-1.58994551673671	-1.55912852307891	-1.56844783632235	-1.57610299769523	-1.18549093183599	-1.55710898902261	-1.56633814807757	-1.57473272746952	1.78703309985663	0.610309988231842	1
Merged-chr18-68154313-4	chr18	68154201	68154401	+	873.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172631, intron 3 of 5)	intron (NM_172631, intron 3 of 5)	-73645.0	NM_001357444	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-17205182-4	chr16	17205087	17205287	+	861.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-2948.0	NM_001033338	239731.0	Mm.86671	NM_001033338	ENSMUSG00000071636	Rimbp3	Gm1759|Gm603|RIM-BP3|mKIAA1666	RIMS binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122643183-2	chr5	122643083	122643283	+	668.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011027)	promoter-TSS (NM_011027)	-728.0	NM_001038839	18439.0	Mm.42026	NM_011027	ENSMUSG00000029468	P2rx7	AI467586|P2X(7)|P2X7R	purinergic receptor P2X, ligand-gated ion channel, 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-76285963-1	chr17	76285863	76286063	+	559.0	f1_balb.idr	Intergenic	Intergenic	424940.0	NR_033456	100043885.0	Mm.127562	NR_033456		Gm4710	-	predicted gene 4710	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-59237813-3	chr1	59237706	59237906	+	944.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028717)	promoter-TSS (NM_028717)	-575.0	NM_028717	74018.0	Mm.272078	NM_028717	ENSMUSG00000026024	Als2	3222402C23Rik|9430073A21Rik|Als2cr6|Alsin|mKIAA1563	alsin Rho guanine nucleotide exchange factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-23699423-2	chr17	23699323	23699523	+	880.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15397.0	NM_020293	56863.0	Mm.491368	NM_020293	ENSMUSG00000066720	Cldn9	nmf329	claudin 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-74134084-4	chr1	74133990	74134190	+	703.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034060, intron 8 of 11)	intron (NM_001034060, intron 8 of 11)	8549.0	NM_001034060	435626.0	Mm.240447	NM_001034060	ENSMUSG00000061815	Rufy4	F930048N03Rik	RUN and FYVE domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-16064498-9	chr19	16064407	16064607	+	837.283325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68324.0	NM_008139	14682.0	Mm.439701	NM_008139	ENSMUSG00000024639	Gnaq	1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI	guanine nucleotide binding protein, alpha q polypeptide	protein-coding	-1.36015291771705	-1.32842431658676	-1.33874579108173	-1.34722415754512	-1.35969949349639	-1.32618761000664	-1.33640923549635	-0.791042329471244	2.42373733289067	0.484013421080845	1
Merged-chr10-60730446-3	chr10	60730359	60730559	+	723.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023596, intron 3 of 5)	intron (NM_023596, intron 3 of 5)	22323.0	NM_023596	71279.0	Mm.284462	NM_023596	ENSMUSG00000020100	Slc29a3	4933435C21Rik|AW987637|Ent3	solute carrier family 29 (nucleoside transporters), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-38563489-2	chr5	38563370	38563570	+	789.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1875.0	NM_011715	22388.0	Mm.2654	NM_011715	ENSMUSG00000005103	Wdr1	Aip1|D5Wsu185e|rede	WD repeat domain 1	protein-coding	-0.859082918983678	-0.988263333422384	-1.00040322824838	-1.00311683473178	-1.00626376281094	-0.985632567570811	-0.997655022158689	-0.350334081862082	2.02436496650785	0.517018710074872	1
Merged-chr3-90383839-4	chr3	90383738	90383938	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6100.0	NM_001316688	26568.0	Mm.45519	NM_011988	ENSMUSG00000027932	Slc27a3	Acsvl3|FATP-3|FATP3|Vlcs-3	solute carrier family 27 (fatty acid transporter), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-153895533-2	chr1	153895433	153895633	+	677.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3887.0	NM_178244	240819.0	Mm.453236	NM_178244	ENSMUSG00000047053	Teddm1a	Epdd1|Teddm1|e9-1	transmembrane epididymal protein 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-19187305-4	chr10	19187205	19187405	+	925.474976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038022, intron 1 of 1)	intron (NR_038022, intron 1 of 1)	20067.0	NR_038022	100504265.0	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-30890831-2	chr14	30890731	30890931	+	651.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_018746, intron 6 of 22)	intron (NM_018746, intron 6 of 22)	4355.0	NM_001289632	16427.0	Mm.34819	NM_018746	ENSMUSG00000021922	Itih4	ITI-HC4|Itih-4|PK-120	inter alpha-trypsin inhibitor, heavy chain 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-74763255-4	chr1	74763176	74763376	+	796.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8616.0	NM_009526	22420.0	Mm.268282	NM_009526	ENSMUSG00000033227	Wnt6	AA409270|Wnt-6	wingless-type MMTV integration site family, member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-33951513-3	chr13	33951421	33951621	+	759.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040707, intron 1 of 4)	intron (NR_040707, intron 1 of 4)	-13138.0	NM_001163239	18105.0	Mm.264036	NM_020282	ENSMUSG00000046949	Nqo2	NMO2|Nmor2|Ox2	N-ribosyldihydronicotinamide quinone reductase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-30612021-2	chr17	30611921	30612121	+	904.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113560, intron 1 of 6)	intron (NM_001113560, intron 1 of 6)	638.0	NM_025374	109801.0	Mm.261984	NM_025374	ENSMUSG00000024026	Glo1	0610009E22Rik|1110008E19Rik|2510049H23Rik|AW550643|GLY1|Glo-1|Glo-1r|Glo-1s|Glo1-r|Glo1-s|Qglo	glyoxalase 1	protein-coding	0.689077733868833	0.465691359949774	0.98098305685984	0.732183214118803	0.695540679535333	0.64531247736477	0.991215656133	0.456092169712921	-0.111020331694044	0.945486104667375	1
Merged-chr9-58802496-4	chr9	58802374	58802574	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21038.0	NM_001081192	330953.0	Mm.151967	NM_001081192	ENSMUSG00000032338	Hcn4	Bcng3|Hcn3	hyperpolarization-activated, cyclic nucleotide-gated K+ 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67593122-2	chr10	67593022	67593222	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-21163.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5495722-5	chr17	5495658	5495858	+	828.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	3158.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-80209592-4	chr11	80209490	80209690	+	980.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163355, intron 1 of 19)	intron (NM_001163355, intron 1 of 19)	535.0	NM_021536	59040.0	Mm.489674	NM_021536	ENSMUSG00000017686	Rhot1	2210403N23Rik|AA415293|AF244542|AI834919|Arht1|C430039G08Rik|Miro1	ras homolog family member T1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-25285628-4	chr15	25285517	25285717	+	928.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	128147.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-74808708-4	chr13	74808618	74808818	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009817)	promoter-TSS (NM_009817)	42.0	NM_001301153	12380.0	Mm.29163	NM_009817	ENSMUSG00000021585	Cast	-	calpastatin	protein-coding	2.83371644815059	3.52424143887547	3.4790388222945	3.2419845508262	2.5483676518958	3.54937212972467	2.49031858972749	1.82957704335581	-0.92893662575604	0.189013323089315	0.667555616405381
Merged-chr11-5742290-2	chr11	5742190	5742390	+	782.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361588, intron 1 of 6)	B2_Mm2|SINE|B2	-1114.0	NM_178623	72046.0	Mm.271657	NM_178623	ENSMUSG00000049680	Urgcp	2010005J08Rik|9130001I21Rik|AW060359|Urg4|mKIAA1507	upregulator of cell proliferation	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-20892165-4	chr9	20892081	20892281	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_145610)	TTS (NM_145610)	4006.0	NM_145610	235036.0	Mm.2930	NM_145610	ENSMUSG00000004100	Ppan	A230087P06Rik|SSF1	peter pan homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91933760-2	chr16	91933660	91933860	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2130.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-88248357-2	chr7	88248257	88248457	+	981.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29728.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-43865969-4	chr5	43865850	43866050	+	929.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2859.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	2.94686750318198	2.41922354407006	3.5023835264096	3.59199200356134	2.88489622932294	3.57275104862207	2.80194662326327	2.27802012728161	-0.402024972767883	0.556095823206382	0.960313897742752
Merged-chr1-177282179-4	chr1	177282088	177282288	+	880.845825	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33421.0	NM_011785	23797.0	Mm.235194	NM_011785	ENSMUSG00000019699	Akt3	AI851531|D930002M15Rik|Nmf350	thymoma viral proto-oncogene 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-58976472-2	chr4	58976372	58976572	+	846.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025968, intron 5 of 9)	intron (NM_025968, intron 5 of 9)	10606.0	NM_025968	67103.0	Mm.34497	NM_025968	ENSMUSG00000028378	Ptgr1	2510002C21Rik|Ltb4dh|Zadh3	prostaglandin reductase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-43479164-4	chr10	43479093	43479293	+	996.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199028)	promoter-TSS (NM_199028)	53.0	NM_199028	331623.0	Mm.490388	NM_199028	ENSMUSG00000038214	Bend3	mKIAA1553	BEN domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-5805627-2	chr13	5805527	5805727	+	885.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52465.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-72177114-1	chr5	72177014	72177214	+	724.0	f0_balb.idr	Intergenic	Intergenic	-8925.0	NM_001356614	27784.0	Mm.44223	NM_178599	ENSMUSG00000029213	Commd8	C77770|D5Buc26e	COMM domain containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83796212-2	chr6	83796113	83796313	+	697.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164187, intron 1 of 9)	B1_Mus1|SINE|Alu	1055.0	NM_001164187	56174.0	Mm.190650	NM_019542	ENSMUSG00000034744	Nagk	Gnk	N-acetylglucosamine kinase	protein-coding	1.4681051796118	2.14861889682121	1.2424554538994	2.00485042274909	1.48036731494021	2.16616768775996	1.25075152205039	0.99650603445747	-0.630045086693662	0.589115369068037	0.968865306825047
Merged-chr8-83595480-1	chr8	83595380	83595580	+	717.0	f1_balb.idr	promoter-TSS (NM_027179)	promoter-TSS (NM_027179)	-989.0	NM_134118	106529.0	Mm.352239	NM_027179	ENSMUSG00000031708	Tecr	2410016D23Rik|A230102P12Rik|AI173355|D17Ertd178e|Gpsn2|SC2	trans-2,3-enoyl-CoA reductase	protein-coding	0.856211702212504	0.919319597596375	0.899335332960346	1.81142799703372	1.37963897929548	2.25438392200208	1.65007895813877	1.82218683371604	2.01980099878865	0.122844789422198	0.549549509130327
Merged-chr9-118598446-2	chr9	118598346	118598546	+	660.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F1|SINE|Alu	-8263.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-108081447-2	chr3	108081344	108081544	+	571.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289719, intron 2 of 18)	intron (NM_001289719, intron 2 of 18)	3958.0	NM_001346665	109674.0	Mm.274335	NM_028779	ENSMUSG00000027889	Ampd2	1200014F01Rik|AI552571|Ampd-2|m4521Dajl	adenosine monophosphate deaminase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-80185331-2	chr12	80185231	80185431	+	577.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_134156, intron 8 of 20)	MLT2B4|LTR|ERVL	-52487.0	NR_033514	69548.0	Mm.269712	NR_033514		2310015A10Rik	5330419I17Rik	RIKEN cDNA 2310015A10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-82244527-4	chr15	82244427	82244627	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080158)	promoter-TSS (NM_001080158)	-191.0	NM_001080158	66570.0	Mm.23596	NM_025639	ENSMUSG00000068101	Cenpm	2610019I03Rik|AI853711|Pane1	centromere protein M	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-155093432-5	chr1	155093418	155093618	+	826.200012	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6118.0	NM_010500	15939.0	Mm.12246	NM_010500	ENSMUSG00000056708	Ier5	-	immediate early response 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-54492754-4	chr11	54492656	54492856	+	998.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173753, intron 9 of 17)	intron (NM_173753, intron 9 of 17)	-30089.0	NM_001252494	192786.0	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-91668243-2	chr9	91668143	91668343	+	633.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4B|LINE|L1	299271.0	NM_009576	22774.0	Mm.8062	NM_009576	ENSMUSG00000036972	Zic4	-	zinc finger protein of the cerebellum 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-98831664-4	chr10	98831560	98831760	+	973.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-82982.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-35588457-3	chr8	35588286	35588486	+	868.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081279, exon 1 of 3)	exon (NM_001081279, exon 1 of 3)	588.0	NM_001081279	52065.0	Mm.103246	NM_001081279	ENSMUSG00000070056	Mfhas1	2310066G09Rik|D8Ertd91e	malignant fibrous histiocytoma amplified sequence 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67196967-2	chr10	67196867	67197067	+	859.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_207221, intron 3 of 25)	B3|SINE|B2	11217.0	NM_001242396	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-84454274-4	chr14	84454165	84454365	+	911.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013753, intron 1 of 3)	intron (NM_001013753, intron 1 of 3)	10702.0	NM_001013753	219228.0	Mm.153643	NM_001013753	ENSMUSG00000035566	Pcdh17	C030033F14Rik|Gm78	protocadherin 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-13770189-2	chr1	13770089	13770289	+	559.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	16740.0	NR_004447	433273.0	Mm.304088	NR_004447	ENSMUSG00000097711	Gm5523	EG433273	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-50111245-4	chr17	50111142	50111342	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181397, intron 2 of 9)	intron (NM_181397, intron 2 of 9)	79255.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-79562730-8	chr14	79562622	79562822	+	920.0750119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286412, intron 3 of 7)	intron (NM_001286412, intron 3 of 7)	-24938.0	NM_026474	67955.0	Mm.18972	NM_026474	ENSMUSG00000022024	Sugt1	2410174K12Rik|SGT1	SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-99253981-4	chr3	99253874	99254074	+	734.137512	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009323, exon 1 of 8)	exon (NM_009323, exon 1 of 8)	214.0	NM_009323	21384.0	Mm.88761	NM_009323	ENSMUSG00000027868	Tbx15	Tbx14|Tbx8|de	T-box 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-111473174-4	chr10	111473085	111473285	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015781)	promoter-TSS (NM_015781)	-42.0	NM_001358932	53605.0	Mm.290407	NM_015781	ENSMUSG00000058799	Nap1l1	AA407126|AI256722|D10Ertd68e|NAP-1	nucleosome assembly protein 1-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-59129212-4	chr2	59129108	59129308	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362394, intron 1 of 13)	L1MA6|LINE|L1	31475.0	NM_001362393	227933.0	Mm.330234	NM_177650	ENSMUSG00000036641	Ccdc148	5830402J09|Gm38473	coiled-coil domain containing 148	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-136887510-10	chr4	136887505	136887705	+	712.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1428.0	NM_009777	12260.0	Mm.2570	NM_009777	ENSMUSG00000036905	C1qb	-	complement component 1, q subcomponent, beta polypeptide	protein-coding	1.70948726802007	2.46378476536472	2.09572357849261	1.66645496578128	1.83808897409404	1.14707669664423	1.12333840344105	2.14345856681237	-1.03143445046001	0.354095091576316	0.853132398390271
Merged-chr14-62222906-4	chr14	62222799	62222999	+	650.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13B|LTR|ERVK	70080.0	NM_173419	239133.0	Mm.127330	NM_173419	ENSMUSG00000048281	Dleu7	BC038059	deleted in lymphocytic leukemia, 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-76175234-4	chr5	76175135	76175335	+	996.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVB3_1-I_MM-int|LTR|ERVK	-8645.0	NM_011626	21982.0	Mm.790	NM_011626	ENSMUSG00000029234	Tmem165	AV026557|Tpardl|Tparl|pFT27	transmembrane protein 165	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98765746-2	chr11	98765646	98765846	+	717.75	f1_balb.idr|f1_c57bl6.idr	TTS (NM_178060)	TTS (NM_178060)	9631.0	NM_145434	217166.0	Mm.390397	NM_145434	ENSMUSG00000020889	Nr1d1	A530070C09Rik|R75201	nuclear receptor subfamily 1, group D, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76311880-2	chr15	76311780	76311980	+	660.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-4635.0	NM_153122	75475.0	Mm.322738	NM_153122	ENSMUSG00000022562	Oplah	1700010G02Rik	5-oxoprolinase (ATP-hydrolysing)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124476688-2	chr6	124476588	124476788	+	636.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11904.0	NM_153508	232370.0	Mm.193701	NM_153508	ENSMUSG00000008153	Clstn3	CSTN3|Cs3|Cst-3|alc-beta	calsyntenin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-49069886-2	chr7	49069786	49069986	+	703.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111016, intron 2 of 38)	intron (NM_001111016, intron 2 of 38)	92272.0	NR_154465	108167511.0	Mm.400599	NR_154465		9130015G15Rik	-	RIKEN cDNA 9130015G15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-84251422-4	chr1	84251303	84251503	+	761.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003948, intron 1 of 2)	Lx8|LINE|L1	-32442.0	NR_105771	102465181.0		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-61155527-2	chr10	61155427	61155627	+	785.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR48B|LTR|ERV1	-7843.0	NM_001316674	20397.0	Mm.412319	NM_009163	ENSMUSG00000020097	Sgpl1	AI428538|D10Xrf456|S1PL|Spl	sphingosine phosphate lyase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-55854788-2	chr7	55854688	55854888	+	957.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164661, intron 2 of 31)	intron (NM_001164661, intron 2 of 31)	12717.0	NM_001164661	20430.0	Mm.37249	NM_011370	ENSMUSG00000030447	Cyfip1	E030028J09Rik|P140SRA-1|P140sra1|Shyc|Sra-1|Sra1|l(7)1Rl|l71Rl|l7Rl1|mKIAA0068|pl-1	cytoplasmic FMR1 interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-9575827-3	chr10	9575731	9575931	+	760.027771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	99377.0	NM_177271	320825.0	Mm.101115	NM_177271	ENSMUSG00000060487	Samd5	E130306M17Rik	sterile alpha motif domain containing 5	protein-coding	-1.26550836321643	-1.23538490674683	-1.24673049817958	-1.25605010478787	-1.26497736998827	-0.580802564315158	-1.24416210496749	-1.25438189966081	2.74054745292391	0.426663645876262	1
Merged-chr8-104641062-2	chr8	104640962	104641162	+	685.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_026753, exon 3 of 5)	exon (NM_026753, exon 3 of 5)	666.0	NM_026753	68523.0	Mm.279	NM_026753	ENSMUSG00000031879	Fam96b	1110019N10Rik	family with sequence similarity 96, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-92849866-4	chr8	92849769	92849969	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008610, intron 11 of 12)	intron (NM_008610, intron 11 of 12)	-5464.0	NM_173014	270084.0	Mm.21463	NM_173014	ENSMUSG00000033192	Lpcat2	1-AGPAT 11|A330042H22|Aytl1|Aytl1a|lpafat1|lysoPAFAT|lysoPAFAT/LPCAT2	lysophosphatidylcholine acyltransferase 2	protein-coding	4.11502125475101	3.54494527942537	4.1228947819176	3.69001468806814	2.68274188458076	2.73311311334675	2.63455723841473	3.2590119251754	-1.64338554731175	0.00361703178446342	0.0519518922785221
Merged-chr3-65549914-4	chr3	65549808	65550008	+	896.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178892, intron 4 of 5)	intron (NM_178892, intron 4 of 5)	-20494.0	NR_027955	71004.0	Mm.475465	NM_001033527	ENSMUSG00000074580	4931440P22Rik	-	RIKEN cDNA 4931440P22 gene	ncRNA	2.2160762233374	2.43926411789946	0.952326150099433	0.929401845636792	2.2372172636791	2.45974317124917	0.958720086244998	0.933471629166708	0.0408349595874616	0.986327181636622	0.998431161219273
Merged-chr3-118094449-2	chr3	118094349	118094549	+	582.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-225513.0	NM_029655	76561.0	Mm.33824	NM_029655	ENSMUSG00000028007	Snx7	2510028H01Rik	sorting nexin 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34635867-4	chr17	34635757	34635957	+	946.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6171.0	NM_030890	260297.0	Mm.390965	NM_030890	ENSMUSG00000015476	Prrt1	Bat-4|Bat4|D17H6S54E|DSPD1|G5b|NG5|ORF31|SynDIG4	proline-rich transmembrane protein 1	protein-coding	2.54468601225814	3.94940478150001	4.05465440922478	2.95752796242524	2.56876848227839	3.83944237753781	4.08407999404545	3.37179268674361	0.0820910533849626	0.89664419259145	0.998431161219273
Merged-chr4-134921873-2	chr4	134921773	134921973	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1752.0	NM_023665	27981.0	Mm.331964	NM_023665	ENSMUSG00000037266	Rsrp1	2700043I21Rik|D4Ucla2|D4Wsu53e	arginine/serine rich protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-42330782-2	chr10	42330682	42330882	+	697.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359297, intron 9 of 11)	intron (NM_001359297, intron 9 of 11)	-54040.0	NM_019740	56484.0	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-149098867-3	chr3	149098781	149098981	+	732.266663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-144246.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	-2.05752322593321	-2.15521190974092	-2.16307242109104	-2.16952927915413	-2.17938029103484	-2.15350850414045	-2.16129297361887	-2.16837350464794	-0.683654500252594	0.846597994014493	1
Merged-chr2-76675704-2	chr2	76675604	76675804	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_031256, intron 1 of 7)	CpG	389.0	NM_031256	83435.0	Mm.41636	NM_031256	ENSMUSG00000002733	Plekha3	FAPP1	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-14102063-4	chr10	14101949	14102149	+	976.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010437, intron 2 of 8)	intron (NM_010437, intron 2 of 8)	135670.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-33884327-4	chr6	33884213	33884413	+	906.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009148, intron 14 of 17)	intron (NM_009148, intron 14 of 17)	-145135.0	NM_028886	74354.0	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-127492811-3	chr3	127492681	127492881	+	847.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001327938, intron 1 of 47)	MLT1G1|LTR|ERVL-MaLR	6334.0	NM_001327938	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	5.36359128010483	5.15164422597128	5.15621057751708	5.43241812318239	3.10930088642951	2.16284909193575	1.76407424975596	3.67764512606443	-3.1408903036255	2.50878968306147e-10	4.83857403977628e-08
Merged-chr11-118288700-2	chr11	118288600	118288800	+	546.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033528, intron 1 of 20)	intron (NM_001033528, intron 1 of 20)	1544.0	NM_001033528	72344.0	Mm.232293	NM_001033528	ENSMUSG00000033909	Usp36	2700002L06Rik|mKIAA1453	ubiquitin specific peptidase 36	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-72858756-2	chr5	72858656	72858856	+	789.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013689, intron 1 of 17)	MIRb|SINE|MIR	9692.0	NM_001113461	21682.0	Mm.319581	NM_013689	ENSMUSG00000029217	Tec	-	tec protein tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-72438481-4	chr9	72438369	72438569	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008613)	promoter-TSS (NM_008613)	-60.0	NM_008613	17427.0	Mm.387671	NM_008613	ENSMUSG00000032221	Mns1	AW546487	meiosis-specific nuclear structural protein 1	protein-coding	6.39858134760318	5.95304189918838	6.05334125179197	6.51388896862323	6.44987224132017	6.23771801884404	5.94146635516421	6.7903721228434	0.150510610394408	0.528309073733804	0.949209944897898
Merged-chr10-79669864-4	chr10	79669762	79669962	+	849.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_148934, intron 1 of 1)	CpG	452.0	NM_148934	110012.0	Mm.22623	NM_148934	ENSMUSG00000020308	Tpgs1	AV005629|Gm16517|Gtrgeo22|PGs1	tubulin polyglutamylase complex subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-63088806-2	chr14	63088706	63088906	+	841.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33656.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-75163331-2	chr14	75163231	75163431	+	564.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008879, intron 1 of 16)	Lx8|LINE|L1	26906.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-20111463-4	chr13	20111348	20111548	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 1 of 21)	ORR1F|LTR|ERVL-MaLR	20941.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-64086741-4	chr9	64086675	64086875	+	863.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040743, intron 2 of 2)	intron (NR_040743, intron 2 of 2)	6014.0	NR_040743	76814.0	Mm.243771	NR_040743		Scarletltr	2600006L11Rik	Scarletltr, erythroid developmental long intergenic non-protein coding transcript	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-20642622-4	chr9	20642485	20642685	+	967.0238039999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_153857)	promoter-TSS (NR_153857)	-132.0	NM_001361025	66177.0	Mm.390165	NM_025401	ENSMUSG00000084786	Ubl5	1110030M22Rik|beacon	ubiquitin-like 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-135737470-2	chr7	135737370	135737570	+	544.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21091.0	NM_001081117	17345.0	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70058548-1	chr14	70058448	70058648	+	543.0	f1_balb.idr	intron (NM_028560, intron 6 of 6)	intron (NM_028560, intron 6 of 6)	-18897.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-4203904-2	chr11	4203804	4204004	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134023, intron 1 of 8)	intron (NM_134023, intron 1 of 8)	-14347.0	NM_028022	71962.0	Mm.7852	NM_028022	ENSMUSG00000020424	Gatsl3	2410008K03Rik|Castor1	GATS protein-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180416087-2	chr1	180415987	180416187	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081175, intron 4 of 7)	intron (NM_001081175, intron 4 of 7)	67417.0	NM_001081227	381310.0	Mm.44791	NM_001081227	ENSMUSG00000053963	Stum	6330403A02Rik|Gm10001|R75555	mechanosensory transduction mediator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-107756482-4	chr13	107756397	107756597	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 5 of 14)	intron (NM_145456, intron 5 of 14)	69100.0	NR_045900	72257.0	Mm.234155	NR_045900	ENSMUSG00000102000	1700006H21Rik	-	RIKEN cDNA 1700006H21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-87369352-4	chr3	87369257	87369457	+	872.366699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009690, intron 5 of 5)	intron (NM_009690, intron 5 of 5)	-7030.0	NM_001310545	229499.0	Mm.255203	NM_153090	ENSMUSG00000059994	Fcrl1	A230020G22Rik|Bxmas1|Bxmh1|Bxmh1b|Fcrh1|Fcrh1l|Fcrh1s|Ifgp1	Fc receptor-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-108940191-2	chr12	108940091	108940291	+	678.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177602, intron 2 of 6)	intron (NM_177602, intron 2 of 6)	45919.0	NM_177602	212198.0	Mm.342082	NM_177602	ENSMUSG00000040877	Wdr25	B930090D16Rik	WD repeat domain 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-114775577-2	chr9	114775477	114775677	+	823.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252479, intron 1 of 3)	intron (NM_001252479, intron 1 of 3)	6416.0	NM_133978	102545.0	Mm.35600	NM_133978	ENSMUSG00000032436	Cmtm7	AI481279|Cklfsf7|LNV	CKLF-like MARVEL transmembrane domain containing 7	protein-coding	-0.0770826470837179	-0.0581958060023885	-0.0643463250967498	0.927849012962116	0.083294350354909	-0.0568141311525209	0.132181059579922	0.263597341905391	-1.14842664802618	0.586369482333612	1
Merged-chr6-16738116-3	chr6	16738004	16738204	+	969.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	160337.0	NM_031198	21426.0	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-89286914-4	chr6	89286834	89287034	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1209.0	NR_131021	75131.0	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	Gm44205	RIKEN cDNA 4930512J16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-66908184-4	chr9	66908070	66908270	+	984.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	11535.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-54930168-2	chr11	54930068	54930268	+	641.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271456, intron 8 of 18)	B1_Mus2|SINE|Alu	27314.0	NM_008161	14778.0	Mm.200916	NM_008161	ENSMUSG00000018339	Gpx3	AA960521|EGPx|GPx|GSHPx-3|GSHPx-P	glutathione peroxidase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-152103435-2	chr2	152103335	152103535	+	630.416626	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER5|LTR|ERV1	-2089.0	NM_029688	76650.0	Mm.218639	NM_029688	ENSMUSG00000032802	Srxn1	1700127B04Rik|AI854065|AW488194|Npn3|Srx|Srx1|TX01	sulfiredoxin 1 homolog (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-29765021-2	chr2	29764921	29765121	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001177392)	TTS (NM_001177392)	3493.0	NM_001177392	433416.0	Mm.330112	NM_001034887	ENSMUSG00000075425	Gm13547	-	predicted gene 13547	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-82896500-4	chr15	82896406	82896606	+	832.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_027799, exon 1 of 1)	non-coding (NR_027799, exon 1 of 1)	1955.0	NR_027799	21378.0	Mm.417272	NR_027799		Tbrg3	TB-11	transforming growth factor beta regulated gene 3	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117882010-4	chr11	117881938	117882138	+	899.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8512.0	NM_027919	71776.0	Mm.3200	NM_027919	ENSMUSG00000017713	Tha1	1300017K07Rik|GLY1	threonine aldolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76726164-2	chr15	76726064	76726264	+	827.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198420, intron 8 of 10)	intron (NM_198420, intron 8 of 10)	-2319.0	NM_176828	223665.0	Mm.291713	NM_145472	ENSMUSG00000116138	C030006K11Rik	1110033I13Rik	RIKEN cDNA C030006K11 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-40802832-2	chr9	40802750	40802950	+	699.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_031165, exon 4 of 9)	exon (NM_031165, exon 4 of 9)	1577.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	0.77491534539477	2.09697513863759	1.37929219787024	1.33566352092984	0.971503634995159	1.27783254149847	0.814559862095001	1.69606668053912	-0.859678381987525	0.521999883183171	0.947836760490745
Merged-chr10-67050117-2	chr10	67050017	67050217	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178606, intron 2 of 7)	intron (NM_178606, intron 2 of 7)	45042.0	NR_110511	102634101.0	Mm.445258	NR_110511	ENSMUSG00000112925	Gm31763	-	predicted gene, 31763	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-61911096-4	chr8	61910988	61911188	+	976.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8394.0	NM_001293772	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-30771702-4	chr11	30771581	30771781	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134013)	promoter-TSS (NM_134013)	-94.0	NM_134013	103554.0	Mm.240066	NM_134013	ENSMUSG00000040850	Psme4	AA409398|AU041366|TEMO|mKIAA0077	proteasome (prosome, macropain) activator subunit 4	protein-coding	5.20511362738522	6.04573277668869	4.8611394417301	5.21458946690638	5.4146503016303	6.08097393672009	5.31785740559212	5.41389849618908	0.215774765552013	0.504240990702291	0.940284522133039
Merged-chr12-45074439-3	chr12	45074380	45074580	+	796.844421	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144552)	promoter-TSS (NM_144552)	3.0	NM_144552	217517.0	Mm.285400	NM_144552	ENSMUSG00000046314	Stxbp6	BC024598|C85317	syntaxin binding protein 6 (amisyn)	protein-coding	-0.355102099045913	-1.08800443761493	-1.10000538458774	-1.10823191762646	-1.11144624499335	-1.08540378234277	-1.09728863324636	-1.10783509528487	-2.90772050925769	0.391763856616344	1
Merged-chr15-100049837-4	chr15	100049737	100049937	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159361, intron 1 of 37)	intron (NM_001159361, intron 1 of 37)	11173.0	NM_001159361	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84423138-3	chr8	84423028	84423228	+	986.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252060, intron 1 of 47)	intron (NM_001252060, intron 1 of 47)	7764.0	NM_001252061	12286.0	Mm.334658	NM_007578	ENSMUSG00000034656	Cacna1a	APCA|BI|Caca1a|Cacnl1a4|Cav2.1|Ccha1a|EA2|FHM|HPCA|MHP|MHP1|SCA6|alpha1A|la|nmf352|rkr|smrl|tg	calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	protein-coding	1.61397319726377	1.29280606420057	1.25192479683383	2.05639537495959	2.81614077838953	2.92990930155208	2.41735741751487	3.31571988196274	3.07657366691295	0.00114721170272356	0.0215907785390427
Merged-chr10-111134806-3	chr10	111134704	111134904	+	978.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D11|SINE|Alu	-29998.0	NM_001003717	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-79494419-4	chr14	79494323	79494523	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007920, intron 1 of 8)	intron (NM_007920, intron 1 of 8)	-13155.0	NM_018765	22380.0	Mm.476813	NM_018765	ENSMUSG00000022023	Wbp4	AW545037|BB101031|FBP21	WW domain binding protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-100764911-3	chr12	100764807	100765007	+	668.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14150.0	NM_001361023	217830.0	Mm.218590	NM_145448	ENSMUSG00000021185	Dglucy	9030617O03Rik	D-glutamate cyclase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-32534841-4	chr11	32534640	32534840	+	854.1750490000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 1 of 18)	intron (NM_009288, intron 1 of 18)	1474.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	0.223271924108177	0.451773845668709	0.721159816249748	0.232908837949826	0.224710738892323	0.904380461977184	0.958776561123247	0.23391825851458	1.2594531065062	0.516606300863889	1
Merged-chr2-157011169-3	chr2	157011047	157011247	+	937.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001164663, exon 15 of 15)	3' UTR (NM_001164663, exon 15 of 15)	-4072.0	NM_025853	66934.0	Mm.25410	NM_025853	ENSMUSG00000027635	Dsn1	1700022L09Rik|AW552447	DSN1 homolog, MIS12 kinetochore complex component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-93636822-2	chr1	93636722	93636922	+	570.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1095.0	NM_021537	59041.0	Mm.28761	NM_021537	ENSMUSG00000026277	Stk25	1500019J11Rik|AU018434|C86992|Ste20-like|Ysk1	serine/threonine kinase 25 (yeast)	protein-coding	-2.18292257394068	-2.15545247547656	-2.03304972317742	-2.17058342868585	-2.18099422382073	-2.1536522739386	-2.16187909550322	-2.16936197735154	-0.683654500252594	0.846597994014493	1
Merged-chr18-63655661-2	chr18	63655561	63655761	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36698.0	NM_016792	53382.0	Mm.19169	NM_016792	ENSMUSG00000024583	Txnl1	32kDa|TRP32|Txnl	thioredoxin-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-151749973-3	chr3	151749875	151750075	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133871)	promoter-TSS (NM_133871)	-16.0	NM_133871	99899.0	Mm.30756	NM_133871	ENSMUSG00000028037	Ifi44	A430056A10Rik|AW261460|MTAP44|p44	interferon-induced protein 44	protein-coding	3.70208021937745	3.4479792002695	2.57625197877178	3.09459924551023	5.0885748209903	4.99484310119924	5.02243009229725	4.55979156442924	2.19503288161674	9.21428377428977e-07	6.01998378568135e-05
Merged-chr4-106316167-4	chr4	106316067	106316267	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183225)	promoter-TSS (NM_183225)	-46.0	NM_183225	329908.0	Mm.234544	NM_183225	ENSMUSG00000028514	Usp24	2700066K03Rik|2810030C21Rik|AI414051|B130021E18|C79851	ubiquitin specific peptidase 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-104979342-4	chr5	104979233	104979433	+	997.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030239, intron 1 of 15)	intron (NM_030239, intron 1 of 15)	3384.0	NM_030239	27405.0	Mm.389663	NM_030239	ENSMUSG00000029299	Abcg3	Abcp2|Mxr2	ATP binding cassette subfamily G member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-110781997-2	chr9	110781897	110782097	+	748.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16188.0	NM_153099	235628.0	Mm.292285	NM_153099	ENSMUSG00000044664	Prss42	Tessp2	protease, serine 42	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-156783561-2	chr2	156783461	156783661	+	639.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR49|LTR|ERVK	8097.0	NM_172118	98932.0	Mm.271770	NM_172118	ENSMUSG00000067818	Myl9	AI327049|MLC20|Mylc2c|RLC-C	myosin, light polypeptide 9, regulatory	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-149644205-1	chr4	149644105	149644305	+	664.0	f1_balb.idr	intron (NM_023051, intron 14 of 18)	intron (NM_023051, intron 14 of 18)	11362.0	NR_105990	102465983.0		NR_105990	ENSMUSG00000098580	Mir7023	Gm27912|mmu-mir-7023	microRNA 7023	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-95000800-4	chr8	95000699	95000899	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018882, intron 1 of 13)	intron (NM_018882, intron 1 of 13)	16400.0	NM_018882	14766.0	Mm.290834	NM_018882	ENSMUSG00000031785	Adgrg1	Cyt28|Gpr56|TM7LN4|TM7XN1	adhesion G protein-coupled receptor G1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133449915-2	chr4	133449819	133450019	+	767.75	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-30214.0	NM_175307	100342.0	Mm.204656	NM_175307	ENSMUSG00000046694	Fam46b	4732473B16Rik|AU045678|AU046069	family with sequence similarity 46, member B	protein-coding	1.15522710520311	1.63572151976112	1.5714357432698	2.13017708404037	3.5344654179727	2.47212679033955	3.81815096498821	2.76279554066079	3.34922926260558	0.000203981979282369	0.00549560431309102
Merged-chr11-70657684-2	chr11	70657584	70657784	+	694.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001276285, intron 1 of 11)	intron (NM_001276285, intron 1 of 11)	508.0	NM_007933	13808.0	Mm.251322	NM_007933	ENSMUSG00000060600	Eno3	Eno-3|MSE	enolase 3, beta muscle	protein-coding	0.831879269688771	0.376166960016299	0.941202582812798	0.363469595532875	0.842325706305783	0.377780142105644	0.952574903176055	0.364436949309623	0.041305642444789	0.982260836052292	1
Merged-chr3-137971177-2	chr3	137971077	137971277	+	637.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_011932, intron 1 of 8)	intron (NM_011932, intron 1 of 8)	10372.0	NM_001310753	26377.0	Mm.254835	NM_011932	ENSMUSG00000028159	Dapp1	Bam32	dual adaptor for phosphotyrosine and 3-phosphoinositides 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-44294901-4	chr19	44294836	44295036	+	997.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009128, exon 2 of 6)	exon (NM_009128, exon 2 of 6)	1260.0	NM_009128	20250.0	Mm.487021	NM_009128	ENSMUSG00000025203	Scd2	Mir5114|Scd-2|mir-5114|swty	stearoyl-Coenzyme A desaturase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-64668653-4	chr17	64668535	64668735	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008549, intron 7 of 21)	intron (NM_008549, intron 7 of 21)	66986.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-20789407-1	chr13	20789307	20789507	+	783.5	f1_c57bl6.idr	Intergenic	Intergenic	-4706.0	NM_001281854	27052.0	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	0.136026438409376	1.24542162432827	0.157290672448361	0.149401516377745	0.138039025358097	0.169580088507772	0.386272307111392	1.20850455642389	0.117425254396759	0.953563256382722	1
Merged-chr1-127233609-1	chr1	127233509	127233709	+	585.0	f1_balb.idr	intron (NM_145128, intron 1 of 17)	intron (NM_145128, intron 1 of 17)	28623.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-29530363-4	chr6	29530337	29530537	+	954.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252382, intron 1 of 8)	intron (NM_001252382, intron 1 of 8)	1155.0	NM_001252382	27056.0	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-33949865-1	chr17	33949765	33949965	+	582.0	f1_balb.idr	TTS (NM_019420)	TTS (NM_019420)	1623.0	NM_019420	54218.0	Mm.11132	NM_019420	ENSMUSG00000067370	B3galt4	Gal-T2|Galt2	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 4	protein-coding	1.78787981411263	0.876320978446287	1.30419738676342	0.837739080326372	1.48811581992961	2.49198683264886	0.859655119455021	1.70166768551001	1.51576274784555	0.251362044130222	0.749639150195771
Merged-chr15-103305821-2	chr15	103305721	103305921	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4617.0	NM_030720	80910.0	Mm.160369	NM_030720	ENSMUSG00000063234	Gpr84	EX33	G protein-coupled receptor 84	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-57189700-4	chr16	57189613	57189813	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026254, intron 10 of 17)	intron (NM_026254, intron 10 of 17)	11758.0	NM_001358434	67581.0	Mm.257819	NM_026254	ENSMUSG00000022749	Tbc1d23	4930451A13Rik|AU015720|AU043671|AU043778|D030022P07Rik|W51689	TBC1 domain family, member 23	protein-coding	3.26868869241305	4.30391099349974	3.3662470375268	3.16234387545835	3.45628128391619	4.38675194163197	4.61096228695497	3.3811216771138	0.650121247741037	0.236404729485255	0.7331006782763
Merged-chr2-84811068-4	chr2	84810971	84811171	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_024230)	TTS (NM_024230)	11581.0	NM_024230	68678.0	Mm.33452	NM_024230	ENSMUSG00000027077	Smtnl1	1110030K22Rik|CHASM	smoothelin-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-104336985-2	chr8	104336885	104337085	+	790.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-3609.0	NM_024217	68119.0	Mm.390108	NM_024217	ENSMUSG00000031875	Cmtm3	9430096L06Rik|AI413895|BNAS2|Cklfsf3	CKLF-like MARVEL transmembrane domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-132590262-2	chr2	132590162	132590362	+	703.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7934.0	NR_033468	767814.0	Mm.371752	NR_033468	ENSMUSG00000074783	AU019990	-	expressed sequence AU019990	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-22843966-2	chr11	22843866	22844066	+	595.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001169114, intron 1 of 1)	intron (NM_001169114, intron 1 of 1)	15769.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-114397878-4	chr6	114397777	114397977	+	948.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001317126)	promoter-TSS (NM_001317126)	-59.0	NM_001317125	15465.0	Mm.333327	NM_008285	ENSMUSG00000053004	Hrh1	Bphs|H1R|HH1R|Hir	histamine receptor H1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-82917096-2	chr18	82916996	82917196	+	613.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177464, intron 1 of 5)	intron (NM_001177464, intron 1 of 5)	2464.0	NM_001177464	329003.0	Mm.326526	NM_183033	ENSMUSG00000058881	Zfp516	C330029B10Rik|D230016L03|Zfp26l|Znf516|mKIAA0222	zinc finger protein 516	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-81744548-3	chr4	81744492	81744692	+	775.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-257579.0	NR_030570	100124446.0		NR_030570	ENSMUSG00000077941	Mir466h	Mirn466h	microRNA 466h	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81831616-4	chr15	81831518	81831718	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20204.0	NM_017376	21685.0	Mm.270278	NM_017376	ENSMUSG00000022389	Tef	2310028D20Rik	thyrotroph embryonic factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-30804341-1	chr14	30804241	30804441	+	562.0	f1_balb.idr	intron (NM_001166531, intron 16 of 21)	intron (NM_001166531, intron 16 of 21)	-21253.0	NM_028839	69179.0	Mm.143025	NM_028839	ENSMUSG00000006526	Tmem110	1810038N08Rik|2310014H19Rik|AW554125|STIMATE	transmembrane protein 110	protein-coding	0.68829822719726	1.39822933575135	0.71275704524931	1.29720838181154	1.23205018073862	1.41072826002351	0.715344614051926	1.30508956027394	0.512805091512337	0.732713806983969	0.998431161219273
Merged-chr2-129626589-1	chr2	129626489	129626689	+	615.0	f1_c57bl6.idr	intron (NM_001355158, intron 7 of 8)	MTC|LTR|ERVL-MaLR	31127.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	1.76749771817397	2.01145524525725	0.930981301350605	1.78153595360135	1.24104702164026	1.38456198282568	0.934759316790079	1.44686740656065	-1.4846358939963	0.236483546473875	0.733160100928566
Merged-chr7-112405206-3	chr7	112405099	112405299	+	895.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027587, intron 7 of 9)	ORR1E|LTR|ERVL-MaLR	-22507.0	NM_020606	57342.0	Mm.143763	NM_020606	ENSMUSG00000030770	Parva	2010012A22Rik|5430400F08Rik|AI225929|AU042898|Actp|CH-ILKBP|Parvin	parvin, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-89732340-4	chr10	89732225	89732425	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359468)	promoter-TSS (NM_001359468)	-30.0	NM_025914	67019.0	Mm.335292	NM_025914	ENSMUSG00000019948	Actr6	2010200J04Rik|AU044443|Arp6|ArpX|CDA12	ARP6 actin-related protein 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-95977531-2	chr15	95977431	95977631	+	741.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	102022.0	NR_126493	402773.0	Mm.210567	NM_001033483	ENSMUSG00000078925	D030018L15Rik	-	nuclear receptor coactivator 2 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-87924273-2	chr18	87924173	87924373	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	969934.0	NM_018821	54607.0	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-142699074-3	chr2	142698978	142699178	+	833.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355123, intron 23 of 26)	intron (NM_001355123, intron 23 of 26)	202386.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-114747993-6	chr9	114747832	114748032	+	859.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_026036, exon 4 of 4)	3' UTR (NM_026036, exon 4 of 4)	16729.0	NM_026036	67213.0	Mm.28858	NM_026036	ENSMUSG00000032434	Cmtm6	2810051A14Rik|AA536733|Cklfsf6	CKLF-like MARVEL transmembrane domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46502251-4	chr19	46502127	46502327	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_053100, exon 1 of 6)	5' UTR (NM_053100, exon 1 of 6)	579.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-102666428-2	chr13	102666328	102666528	+	833.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER30|DNA|hAT-Charlie	-27119.0	NM_001360519	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-116006952-4	chr6	116006851	116007051	+	961.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11946.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-67587629-4	chr3	67587530	67587730	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025813, intron 4 of 15)	MTE2a|LTR|ERVL-MaLR	4862.0	NM_025813	66868.0	Mm.491153	NM_025813	ENSMUSG00000027775	Mfsd1	1200003O06Rik	major facilitator superfamily domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-24206299-4	chr18	24206204	24206404	+	998.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001361200, exon 1 of 13)	5' UTR (NM_001361200, exon 1 of 13)	310.0	NM_001160404	14423.0	Mm.30249	NM_013814	ENSMUSG00000000420	Galnt1	-	polypeptide N-acetylgalactosaminyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140732517-2	chr5	140732417	140732617	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173405, intron 2 of 7)	intron (NM_173405, intron 2 of 7)	8390.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-6363438-2	chr4	6363338	6363538	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2242.0	NM_016807	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-46014509-4	chr9	46014398	46014598	+	973.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027498, intron 1 of 24)	intron (NM_027498, intron 1 of 24)	1678.0	NM_027498	70661.0	Mm.219459	NM_027498	ENSMUSG00000034135	Sik3	5730525O22Rik|9030204A07Rik|AI447252|AI846254|AI849445|Qsk|SIK-3|mKIAA0999	SIK family kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-119156990-4	chr2	119156888	119157088	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033136)	promoter-TSS (NM_001033136)	46.0	NM_001033136	67809.0	Mm.475909	NM_001033136	ENSMUSG00000070730	Rmdn3	1200015F23Rik|AI131757|Fam82a2|Ptpip51|RMD-3|Rmd3	regulator of microtubule dynamics 3	protein-coding	-2.18308165884198	-2.15547475440471	-2.16382331017202	-2.1706810624505	-2.18114370519566	-2.15366558754311	-2.03057248461154	-2.16945352807143	0.759018020146679	0.829933115115583	1
Merged-chr9-31841327-1	chr9	31841227	31841427	+	962.0	f0_balb.idr	Intergenic	Intergenic	71958.0	NM_013800	12023.0	Mm.261044	NM_013800	ENSMUSG00000032033	Barx2	2310006E12Rik|Barx2b	BarH-like homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-60542579-3	chr3	60542453	60542653	+	860.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310514, intron 2 of 8)	intron (NM_001310514, intron 2 of 8)	41374.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	1.47662829152719	1.09496377394155	1.23352233672997	1.56436897700446	1.87639016661107	0.879011702801019	1.0717503717825	1.20643048348706	-0.0755519196387112	0.95294168370295	0.998431161219273
Merged-chr8-77112981-4	chr8	77112902	77113102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083906, intron 3 of 8)	intron (NM_001083906, intron 3 of 8)	210494.0	NM_001083906	110784.0	Mm.324393	NM_001083906	ENSMUSG00000031618	Nr3c2	MR|Mlr	nuclear receptor subfamily 3, group C, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-95575793-4	chr9	95575703	95575903	+	868.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15986.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-34050953-2	chr11	34050853	34051053	+	804.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_010696, exon 2 of 21)	exon (NM_010696, exon 2 of 21)	4025.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-119377782-4	chr6	119377674	119377874	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197985, intron 1 of 7)	ORR1E|LTR|ERVL-MaLR	10960.0	NM_001355692	68465.0	Mm.291826	NM_197985	ENSMUSG00000030168	Adipor2	1110001I14Rik|ADCR2|AI115388|AW554121|D6Ucla1e|Paqr2	adiponectin receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-82125994-5	chr15	82125900	82126100	+	762.533325	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028897, intron 30 of 30)	B2_Mm2|SINE|B2	-1922.0	NM_172428	76457.0	Mm.440373	NM_172428	ENSMUSG00000068114	Ccdc134	2310042L06Rik|AW208859	coiled-coil domain containing 134	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-25191310-2	chr8	25191210	25191410	+	604.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177089, intron 2 of 12)	MLT1F|LTR|ERVL-MaLR	10232.0	NM_199323	320165.0	Mm.308452	NM_177089	ENSMUSG00000065954	Tacc1	4833447E04Rik|AA960202|B230378H13Rik	transforming, acidic coiled-coil containing protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-104655656-1	chr3	104655556	104655756	+	568.0	f1_balb.idr	exon (NM_009196, exon 5 of 5)	exon (NM_009196, exon 5 of 5)	16992.0	NM_009196	20501.0	Mm.9086	NM_009196	ENSMUSG00000032902	Slc16a1	AL022710|Mct1	solute carrier family 16 (monocarboxylic acid transporters), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-48045083-4	chr4	48045005	48045205	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015743)	promoter-TSS (NM_015743)	-200.0	NM_015743	18124.0	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-85811693-4	chr15	85811590	85811790	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164625)	promoter-TSS (NM_001164625)	7.0	NM_001164626	72355.0	Mm.33706	NM_197998	ENSMUSG00000064284	Cdpf1	2210021J22Rik	cysteine rich, DPF motif domain containing 1	protein-coding	6.55283091613803	7.18497860825614	6.3803921748636	5.97137152007546	6.46830721833268	6.66780680106125	6.36910406261617	6.86552970485051	0.0203824026051778	0.93362571680234	0.998431161219273
Merged-chr10-37258745-1	chr10	37258645	37258845	+	544.0	f1_balb.idr	Intergenic	Intergenic	-119819.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-114823401-4	chr5	114823291	114823491	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181075)	promoter-TSS (NM_181075)	77.0	NM_181075	330173.0	Mm.482205	NM_181075	ENSMUSG00000092486	2610524H06Rik	-	RIKEN cDNA 2610524H06 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-59153582-4	chr3	59153482	59153682	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001287119)	promoter-TSS (NM_001287119)	46.0	NR_045641	320463.0	Mm.484506	NR_045641	ENSMUSG00000036381	F630111L10Rik	-	RIKEN cDNA F630111L10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-58144740-3	chr15	58144642	58144842	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029734, intron 1 of 5)	intron (NM_029734, intron 1 of 5)	3376.0	NM_001326599	76773.0	Mm.26771	NM_029734	ENSMUSG00000022359	Wdyhv1	2410187C16Rik|AU014961|AW550036|Ntaq1	WDYHV motif containing 1	protein-coding	4.1037241712987	3.68382410652229	3.3504026517074	4.40223106043875	4.78695292111241	3.61073940323062	4.3544706174876	4.37728002368438	0.539412108806625	0.249989222582311	0.748413639172589
Merged-chr6-129375295-4	chr6	129375193	129375393	+	992.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001204223)	TTS (NM_001204223)	10210.0	NM_027709	71183.0	Mm.79402	NM_027709	ENSMUSG00000030158	Clec12b	4933425B16Rik	C-type lectin domain family 12, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-150404011-3	chr1	150403910	150404110	+	665.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_133780, exon 7 of 52)	exon (NM_133780, exon 7 of 52)	-10930.0	NM_001357579	226499.0	Mm.222093	NM_145511	ENSMUSG00000006010	BC003331	1810053E15Rik|Odr4|odr-4	cDNA sequence BC003331	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69670767-3	chr11	69670622	69670822	+	782.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_144958, exon 3 of 11)	exon (NM_144958, exon 3 of 11)	1701.0	NM_144958	13681.0	Mm.26680	NM_144958	ENSMUSG00000059796	Eif4a1	BM-010|Ddx2a|Eif4	eukaryotic translation initiation factor 4A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-22093562-2	chr9	22093462	22093662	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5691.0	NM_009922	12797.0	Mm.4356	NM_009922	ENSMUSG00000001349	Cnn1	CN|CnnI	calponin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-100500023-4	chr5	100499913	100500113	+	981.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359914, intron 1 of 13)	CpG	626.0	NM_172714	231506.0	Mm.212568	NM_172714	ENSMUSG00000035310	Lin54	AI461788	lin-54 homolog (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-89302720-3	chr1	89302606	89302806	+	790.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	103427.0	NR_040482	77331.0	Mm.374962	NR_040482	ENSMUSG00000099938	C030007H22Rik	-	RIKEN cDNA C030007H22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-105502573-3	chr9	105502493	105502693	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253831, intron 1 of 26)	intron (NM_001253831, intron 1 of 26)	-7460.0	NM_001253836	235574.0	Mm.326247	NM_175025	ENSMUSG00000032570	Atp2c1	1700121J11Rik|ATP2C1A|AW061228|BCPM|D930003G21Rik|HHD|SPCA|pmr1	ATPase, Ca++-sequestering	protein-coding	5.08778711612393	5.85301476062231	5.07549709195596	4.97965548678902	2.50554864475045	2.73790290058813	1.61945887841859	1.53438704285004	-4.52016300838895	1.58544751039377e-13	6.63565089408297e-11
Merged-chr2-130733666-4	chr2	130733563	130733763	+	937.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029432, intron 27 of 36)	intron (NM_029432, intron 27 of 36)	-36144.0	NM_001081162	269356.0	Mm.441391	NM_001081162	ENSMUSG00000074796	Slc4a11	AI503023|BTR1|NaBC1	solute carrier family 4, sodium bicarbonate transporter-like, member 11	protein-coding	3.91345822132506	4.64572082956417	5.32229172401982	3.71653971751016	3.88738050664762	4.72447055523442	4.43474954567262	2.72049164451442	-0.552448958303651	0.303519017537338	0.805462835517226
Merged-chr10-80788968-2	chr10	80788868	80789068	+	662.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_199322, exon 24 of 28)	exon (NM_199322, exon 24 of 28)	9658.0	NM_023900	78670.0	Mm.41479	NM_023900	ENSMUSG00000035278	Plekhj1	9530063M10Rik	pleckstrin homology domain containing, family J member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-24081838-4	chr7	24081737	24081937	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001045486)	promoter-TSS (NM_001045486)	-60.0	NM_001289640	210135.0	Mm.32254	NM_172483	ENSMUSG00000057101	Zfp180	2310040I01Rik|AI852378|D130011P11|HHZ168	zinc finger protein 180	protein-coding	-0.499940950918087	-0.487518524828365	0.0891561271406926	-0.494726023626598	-0.499164980458282	-0.486601867615524	0.100277611126392	-0.494177430718284	0.0410194320726077	0.98816738256539	1
Merged-chr4-142054235-3	chr4	142054137	142054337	+	767.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145402, intron 1 of 2)	ID_B1|SINE|B4	-30061.0	NR_027137	100038693.0	Mm.402714	NR_027137	ENSMUSG00000073728	Tmem51os1	Gm10565|Tmem51as1	Tmem51 opposite strand 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-57934494-4	chr11	57934414	57934614	+	952.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74550.0	NM_028451	73158.0	Mm.248843	NM_028451	ENSMUSG00000037331	Larp1	1810024J12Rik|3110040D16Rik|Larp|mKIAA0731	La ribonucleoprotein domain family, member 1	protein-coding	2.48916639451983	3.10280089600641	1.4642090877361	2.82571679542911	1.996615381439	2.70531740299521	2.61254671656743	3.50977739808952	0.422155783976515	0.614860801955804	0.977303445845731
Merged-chr4-134160241-1	chr4	134160141	134160341	+	677.5	f0_c57.idr	intron (NM_144527, intron 3 of 13)	RLTR4_MM-int|LTR|ERV1	26844.0	NM_144527	70012.0	Mm.26542	NM_144527	ENSMUSG00000037443	Cep85	2410030J07Rik|AI173272|AI173504|Ccdc21	centrosomal protein 85	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171479111-3	chr1	171478959	171479159	+	650.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24419.0	NM_019484	56009.0	Mm.389208	NM_019484	ENSMUSG00000060244	Alyref2	C130042O11Rik|REF2|Refbp2	Aly/REF export factor 2	protein-coding	1.79851017622153	0.983700846394309	1.87045128442849	0.95296670019726	1.96908338537643	1.58132617396815	1.37262738080277	1.33294900559207	0.343271535544732	0.783814149148161	0.998431161219273
Merged-chr2-132019424-4	chr2	132019273	132019473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175445, intron 1 of 10)	intron (NM_175445, intron 1 of 10)	10615.0	NM_175445	215653.0	Mm.204737	NM_175445	ENSMUSG00000027339	Rassf2	3830431H01Rik|9030412M04Rik|AI852669|AW495050	Ras association (RalGDS/AF-6) domain family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-88999430-4	chr11	88999324	88999524	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009546)	promoter-TSS (NM_009546)	21.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	7.32159768657202	7.41764021570203	7.20520549611192	7.45335795656612	7.31619423077314	6.97847482935328	7.52606366001411	7.38331797033287	-0.0361945516054251	0.822517777698815	0.998431161219273
Merged-chr2-131905895-2	chr2	131905795	131905995	+	762.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4033.0	NM_011170	19122.0	Mm.648	NM_011170	ENSMUSG00000079037	Prnp	AA960666|AI325101|CD230|PrP|PrP<C>|PrPC|PrPSc|Prn-i|Prn-p|Sinc|prP27-30|prP33-35C	prion protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-89907214-2	chr16	89907114	89907314	+	682.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009384, intron 3 of 27)	intron (NM_009384, intron 3 of 27)	53613.0	NM_009384	21844.0	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-32497902-1	chr16	32497802	32498002	+	600.0	f1_balb.idr	intron (NM_199309, intron 3 of 8)	intron (NM_199309, intron 3 of 8)	1621.0	NM_199309	245308.0	Mm.76859	NM_199309	ENSMUSG00000052363	Zdhhc19	Gm1744|Gm616	zinc finger, DHHC domain containing 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-45394365-7	chr13	45394247	45394447	+	893.0714109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153789, intron 2 of 6)	intron (NM_153789, intron 2 of 6)	4605.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-91300303-4	chr10	91300198	91300398	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER89|LTR|ERV1	-79679.0	NR_151510	102633753.0	Mm.416936	NR_151510		4930534H03Rik	-	RIKEN cDNA 4930534H03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-4165358-3	chr8	4165276	4165476	+	708.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1191.0	NM_001039578	213027.0	Mm.437106	NM_153536	ENSMUSG00000011832	Evi5l	1700084G18Rik|2310039H16Rik|3110007G05Rik|B130050I23Rik	ecotropic viral integration site 5 like	protein-coding	-0.250764985031676	-0.304546344899932	-0.48009585970194	-0.336982882352953	-0.485608589650739	-0.300419438564863	-0.479436815607905	-0.208025508477194	-0.260624409049397	0.91115992686692	1
Merged-chr9-60847195-1	chr9	60847095	60847295	+	1000.0	f0_balb.idr	intron (NM_001357408, intron 3 of 19)	RSINE1|SINE|B4	52753.0	NM_001357407	72565.0	Mm.68819	NM_028283	ENSMUSG00000034485	Uaca	2700059D02Rik|nucling	uveal autoantigen with coiled-coil domains and ankyrin repeats	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-83658840-4	chr7	83658738	83658938	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360088, intron 12 of 18)	intron (NM_001360088, intron 12 of 18)	-3343.0	NM_001360089	16170.0	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-121535995-3	chr3	121535910	121536110	+	828.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3666.0	NM_145394	213603.0	Mm.33062	NM_145394	ENSMUSG00000039865	Slc44a3	BC010552	solute carrier family 44, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-77905533-4	chr14	77905451	77905651	+	952.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029495, intron 1 of 11)	intron (NM_029495, intron 1 of 11)	1312.0	NM_029495	108670.0	Mm.68134	NM_029495	ENSMUSG00000022014	Epsti1	2310046K10Rik|5033415K03Rik|BRESI1	epithelial stromal interaction 1 (breast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-60251970-3	chr14	60251814	60252014	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_170591)	promoter-TSS (NM_170591)	-435.0	NM_001362439	71844.0	Mm.258051	NM_170591	ENSMUSG00000114797	Nupl1	1700017F11Rik|Nup58|mKIAA0410	nucleoporin like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-78683690-2	chr11	78683590	78683790	+	799.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008702, intron 1 of 10)	intron (NM_008702, intron 1 of 10)	13735.0	NM_008702	18099.0	Mm.9001	NM_008702	ENSMUSG00000017376	Nlk	AI194375	nemo like kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-30385671-4	chr16	30385603	30385803	+	922.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001128096, intron 2 of 33)	intron (NM_001128096, intron 2 of 33)	2827.0	NM_001128094	224088.0	Mm.8924	NM_001128094	ENSMUSG00000022533	Atp13a3	AU022875|Gm1745|Gm541|Gm542	ATPase type 13A3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-62006628-6	chr11	62006606	62006806	+	799.527771	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310526, intron 1 of 7)	intron (NM_001310526, intron 1 of 7)	49943.0	NM_001310526	432572.0	Mm.438022	NM_001029936	ENSMUSG00000042331	Specc1	2810012G08Rik|B230396K10Rik|Cytsb	sperm antigen with calponin homology and coiled-coil domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-13099193-2	chr15	13099093	13099293	+	562.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007666, intron 1 of 11)	L1_Mus4|LINE|L1	74482.0	NM_007666	12563.0	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-29347853-4	chr17	29347741	29347941	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019880)	promoter-TSS (NM_019880)	91.0	NM_019880	56462.0	Mm.3224	NM_019880	ENSMUSG00000024012	Mtch1	2310034O17Rik|AI255158|AU018396|C77849|PSAP	mitochondrial carrier 1	protein-coding	4.74459034700333	4.89183613476044	4.98815640684186	5.13228179186658	4.81353428952837	4.96929643671015	4.98447042949501	4.54736971847011	-0.132037501933438	0.685373934577452	0.996533206832645
Merged-chr6-120111730-2	chr6	120111630	120111830	+	696.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016718, intron 1 of 3)	intron (NM_016718, intron 1 of 3)	18350.0	NM_016718	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-185277174-3	chr1	185277075	185277275	+	983.8666380000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001163754, exon 30 of 35)	exon (NM_001163754, exon 30 of 35)	34200.0	NR_035529	100316737.0		NR_035529	ENSMUSG00000105770	Mir664	mir-664|mmu-mir-664	microRNA 664	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-102999003-4	chr2	102998905	102999105	+	919.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	74508.0	NM_175094	27402.0	Mm.315011	NM_175094	ENSMUSG00000010914	Pdhx	AI481367|E3bp|Pdx1	pyruvate dehydrogenase complex, component X	protein-coding	1.5449719419771	1.44372259228835	2.39361364406894	2.75398738863334	2.33579446878889	2.95878204062923	3.31058784840317	2.85525079219776	1.50458609879033	0.079077643348235	0.427632315906906
Merged-chr3-51415929-4	chr3	51415769	51415969	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053089)	promoter-TSS (NM_053089)	-147.0	NM_053089	74838.0	Mm.275281	NM_053089	ENSMUSG00000063273	Naa15	5730450D16Rik|6330400I15|ASTBDN|Narg1|Tbdn-1|mNAT1	N(alpha)-acetyltransferase 15, NatA auxiliary subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28545378-1	chr7	28545278	28545478	+	576.0	f1_c57bl6.idr	intron (NM_001081115, intron 3 of 5)	intron (NM_001081115, intron 3 of 5)	1876.0	NM_001081115	233038.0	Mm.224815	NM_001081115	ENSMUSG00000047586	Nccrp1	1190020J12Rik|Gm163|NCCRP-1	non-specific cytotoxic cell receptor protein 1 homolog (zebrafish)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-73569230-4	chr7	73569129	73569329	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10834.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-93685901-2	chr16	93685801	93686001	+	716.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173047, intron 2 of 2)	intron (NM_173047, intron 2 of 2)	2682.0	NM_173047	109857.0	Mm.4512	NM_173047	ENSMUSG00000022947	Cbr3	1110001J05Rik|C81353	carbonyl reductase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97295529-2	chr6	97295391	97295591	+	711.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 22 of 23)	intron (NM_145148, intron 22 of 23)	-42711.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	1.51776108158824	0.907962319767581	2.02284696697922	2.48392783987326	1.05958001353681	0.913097847237645	0.889860270403817	2.06173389886839	-1.45960987023608	0.267456076497056	0.770194930470086
Merged-chr14-52120354-4	chr14	52120250	52120450	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168515, intron 4 of 24)	intron (NM_001168515, intron 4 of 24)	9447.0	NM_023879	77945.0	Mm.21662	NM_023879	ENSMUSG00000057132	Rpgrip1	0610005A07Rik|4930401L23Rik|4930505G06Rik|A930002K18Rik|AA415034|nmf247	retinitis pigmentosa GTPase regulator interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-151579978-1	chr1	151579878	151580078	+	571.0	f0_balb.idr	intron (NM_022018, intron 1 of 13)	G-rich|Low_complexity|Low_complexity	8605.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-103920375-4	chr14	103920284	103920484	+	929.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-75908.0	NM_001136061	13618.0	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-44334218-4	chr2	44334130	44334330	+	948.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301831, intron 13 of 14)	intron (NM_001301831, intron 13 of 14)	-268906.0	NR_040622	320872.0	Mm.445023	NR_040622	ENSMUSG00000085089	Arhgap15os	A430092G05Rik	Rho GTPase activating protein 15, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-64180426-4	chr13	64180312	64180512	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019986, intron 5 of 7)	C-rich|Low_complexity|Low_complexity	18546.0	NM_019986	56541.0	Mm.40989	NM_019986	ENSMUSG00000021476	Habp4	4933413D03Rik|4933428J01Rik	hyaluronic acid binding protein 4	protein-coding	3.5962955911463	3.51914334726663	3.58588024245175	2.65238432032421	4.29312783328525	4.87197078962219	3.92992059974432	4.4052274134773	1.42365329340188	0.00352896921816893	0.0509118464469336
Merged-chr1-170164519-2	chr1	170164419	170164619	+	751.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133806, intron 2 of 10)	intron (NM_133806, intron 2 of 10)	10445.0	NM_133806	107652.0	Mm.27969	NM_133806	ENSMUSG00000026670	Uap1	AA420407|AA437972|AGX-1|AGX-2|AGX1|AgX|ESTM38|SPAG2	UDP-N-acetylglucosamine pyrophosphorylase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118259573-2	chr11	118259473	118259673	+	813.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001033528)	TTS (NM_001033528)	-10981.0	NM_011180	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-46033649-4	chr7	46033543	46033743	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153057)	promoter-TSS (NM_153057)	-53.0	NM_153057	211548.0	Mm.274811	NM_153057	ENSMUSG00000030835	Nomo1	D7Ertd156e|Nomo|pM5	nodal modulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69795416-4	chr11	69795296	69795496	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001291104)	TTS (NM_001291104)	541.0	NM_009601	11443.0	Mm.86425	NM_009601	ENSMUSG00000041189	Chrnb1	Achr-2|Acrb	cholinergic receptor, nicotinic, beta polypeptide 1 (muscle)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-100732049-4	chr12	100731951	100732151	+	814.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6931.0	NM_153587	73086.0	Mm.220417	NM_153587	ENSMUSG00000021180	Rps6ka5	3110005L17Rik|6330404E13Rik|AI854034|MSK1|MSPK1|RLPK|RLSK|S6K-alpha-5	ribosomal protein S6 kinase, polypeptide 5	protein-coding	1.27046632335032	1.71763340259327	2.22047207742347	1.60646733097395	1.53409746381409	1.23005736181926	1.19628066576809	1.16671771803598	-1.61355764012481	0.161931354127176	0.623108526881931
Merged-chr8-60632778-4	chr8	60632681	60632881	+	992.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027756)	promoter-TSS (NM_027756)	-44.0	NM_027756	71306.0	Mm.23242	NM_027756	ENSMUSG00000031647	Mfap3l	4933428A15Rik|5430405D20Rik|AI461995|AW125052|NYD-sp9|mKIAA0626	microfibrillar-associated protein 3-like	protein-coding	2.14330816129129	1.90678423088647	1.25528995015209	1.79647957811217	2.16112681917771	2.20229656458276	2.52311219710442	1.80516082986817	1.00560422367176	0.30333244128407	0.805462835517226
Merged-chr11-76482379-4	chr11	76482277	76482477	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346670, intron 2 of 21)	intron (NM_001346670, intron 2 of 21)	12118.0	NM_001346670	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	2.42172331264808	1.47968840790731	2.09890133535646	3.22911383944739	2.97917453034627	2.4970557509272	2.41316187105855	2.45845334085208	0.25640954834162	0.765198561113489	0.998431161219273
Merged-chr3-98039874-2	chr3	98039774	98039974	+	909.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010928, intron 1 of 33)	intron (NM_010928, intron 1 of 33)	26336.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-48937700-3	chr7	48937584	48937784	+	774.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21389.0	NM_001111016	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-129498031-4	chr6	129497936	129498136	+	996.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138648, intron 3 of 7)	intron (NM_138648, intron 3 of 7)	9129.0	NM_138648	108078.0	Mm.293626	NM_138648	ENSMUSG00000030162	Olr1	LOX-1|SR-EI|Scare1	oxidized low density lipoprotein (lectin-like) receptor 1	protein-coding	-0.0134178274695251	0.00358000043406853	-0.00198185246532478	-0.0062773644441407	0.645370498289248	0.509622489978739	0.466542663304434	-0.00552665409287922	4.02636185202133	0.065370203901263	1
Merged-chr2-166625259-2	chr2	166625159	166625359	+	664.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 5 of 39)	intron (NM_177782, intron 5 of 39)	60737.0	NR_152154	433503.0	Mm.491336	NR_152154		Gm29679	-	predicted gene, 29679	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-18423277-4	chr16	18423180	18423380	+	946.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007744, intron 1 of 4)	intron (NM_007744, intron 1 of 4)	-3137.0	NM_001353143	26462.0	Mm.390906	NM_013711	ENSMUSG00000075704	Txnrd2	AA118373|ESTM573010|TGR|Tr3|Trxr2|Trxrd2	thioredoxin reductase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10945521-2	chr19	10945421	10945621	+	572.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023731, intron 1 of 3)	Lx|LINE|L1	3745.0	NM_023731	108673.0	Mm.294908	NM_023731	ENSMUSG00000024732	Ccdc86	4933411H20Rik|6720480F16Rik|D19Ertd678e	coiled-coil domain containing 86	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-41707170-4	chr5	41707067	41707267	+	951.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132325, intron 1 of 5)	intron (NR_132325, intron 1 of 5)	524.0	NM_001310592	100972.0	Mm.41555	NM_027295	ENSMUSG00000029128	Rab28	2700023P08Rik|AW496496	RAB28, member RAS oncogene family	protein-coding	1.97144059895626	0.65536186201953	1.57614397769152	0.628645820819391	1.22719118784578	0.658678507420686	0.643753600873996	1.17571649794932	-1.46581808821479	0.352419740945235	0.852440430652142
Merged-chr1-54924377-2	chr1	54924277	54924477	+	985.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081433, intron 1 of 27)	intron (NM_001081433, intron 1 of 27)	2010.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-52029864-4	chr3	52029767	52029967	+	782.762512	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	75139.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-123062209-2	chr10	123062109	123062309	+	890.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163024, intron 1 of 34)	intron (NM_001163024, intron 1 of 34)	14296.0	NM_001163024	67074.0	Mm.169924	NM_153395	ENSMUSG00000034602	Mon2	2610528O22Rik|AW495628|Sf21|mKIAA1040	MON2 homolog, regulator of endosome to Golgi trafficking	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-120925041-2	chr6	120924941	120925141	+	596.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-8217.0	NM_007544	12122.0	Mm.235081	NM_007544	ENSMUSG00000004446	Bid	2700049M22Rik|AI875481|AU022477	BH3 interacting domain death agonist	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46619057-3	chr19	46618952	46619152	+	884.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177812, intron 2 of 4)	intron (NM_001177812, intron 2 of 4)	-4349.0	NM_001177813	226178.0	Mm.329895	NM_146099	ENSMUSG00000047731	Wbp1l	D19Wsu162e|Opal1	WW domain binding protein 1 like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-74790447-2	chr5	74790326	74790526	+	756.200012	f0_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-87523.0	NM_001159577	16924.0	Mm.440403	NM_010727	ENSMUSG00000029228	Lnx1	Lnx	ligand of numb-protein X 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-3328367-2	chr2	3328267	3328467	+	741.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001013376)	TTS (NM_001013376)	4261.0	NM_001013376	227522.0	Mm.293948	NM_001013376	ENSMUSG00000049950	Rpp38	C330006A15Rik	ribonuclease P/MRP 38 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90516387-2	chr2	90516286	90516486	+	683.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	-37212.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	1.05341568571941	0.757375583261177	1.56118198236711	0.729366452275688	1.20022898036598	1.95184039725978	1.57622905488915	0.731541941167356	1.35096459432313	0.345877999012534	0.846788703217298
Merged-chr7-87572209-2	chr7	87572109	87572309	+	866.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-11959.0	NM_001081414	108071.0	Mm.235018	NM_001033224	ENSMUSG00000049583	Grm5	6430542K11Rik|AI850523|Glu5R|Gprc1e|mGluR5|mGluR5b	glutamate receptor, metabotropic 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-8987225-3	chr3	8987127	8987327	+	758.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009412, intron 1 of 5)	MER57-int|LTR|ERV1	16977.0	NM_001357073	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	1.59327203866687	2.44973775828149	1.72077209591321	2.12551799396798	1.72966609093194	1.42041204517979	1.38250051122499	1.81598121908767	-1.23227557384794	0.230164245681854	0.72394357324632
Merged-chr11-116297664-1	chr11	116297564	116297764	+	893.0	f1_balb.idr	intron (NM_001347636, intron 6 of 18)	intron (NM_001347636, intron 6 of 18)	9074.0	NM_016857	53413.0	Mm.22530	NM_016857	ENSMUSG00000020792	Exoc7	Exo70|sec70	exocyst complex component 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-55600315-2	chr12	55600215	55600415	+	714.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_020287, exon 1 of 1)	exon (NM_020287, exon 1 of 1)	1398.0	NM_020287	56856.0	Mm.114886	NM_020287	ENSMUSG00000045440	Insm2	Mlt1	insulinoma-associated 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-181246733-2	chr2	181246633	181246833	+	544.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4706.0	NM_183162	229003.0	Mm.315872	NM_183162	ENSMUSG00000027580	Helz2	PDIP1|Pric285|mKIAA1769|mPDIP1	helicase with zinc finger 2, transcriptional coactivator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-47368930-3	chr18	47368820	47369020	+	993.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018744)	promoter-TSS (NM_018744)	-50.0	NM_001311097	20358.0	Mm.40909	NM_018744	ENSMUSG00000019647	Sema6a	A730020P05Rik|AI851735|Sema6A-1|Semaq|VIa	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-87083169-1	chr15	87083069	87083269	+	753.0	f0_balb.idr	Intergenic	Intergenic	-461130.0	NM_001252310	106014.0	Mm.244319	NM_134096	ENSMUSG00000054863	Fam19a5	TAFA5|Tafa-5|Tara-5	family with sequence similarity 19, member A5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-6340545-4	chr15	6340421	6340621	+	998.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001008702, intron 1 of 13)	intron (NM_001008702, intron 1 of 13)	40732.0	NM_001008702	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44192881-3	chr9	44192787	44192987	+	930.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007619, intron 2 of 15)	L1MB4|LINE|L1	41159.0	NM_007619	12402.0	Mm.266871	NM_007619	ENSMUSG00000034342	Cbl	4732447J05Rik|Cbl-2|c-Cbl|cbl	Casitas B-lineage lymphoma	protein-coding	-0.590249150870523	-0.576405012226556	-0.580913964981736	-0.584410321571982	-0.287901227881241	0.32323884831445	-0.579917288352065	-0.583798399645954	3.62049600659976	0.174671488449193	1
Merged-chr17-35077560-1	chr17	35077460	35077660	+	678.0	f1_c57bl6.idr	intron (NM_027366, intron 1 of 2)	intron (NM_027366, intron 1 of 2)	618.0	NM_027366	70274.0	Mm.250491	NM_027366	ENSMUSG00000013766	Ly6g6e	2310011I02Rik|G6e	lymphocyte antigen 6 complex, locus G6E	protein-coding	0.75846488741809	0.397441941605846	0.389994021255299	0.927021286169688	1.04047439841078	0.399118412095212	0.979134021315093	0.38524208026334	0.565915063536446	0.758114673289137	1
Merged-chr4-156134241-1	chr4	156134141	156134341	+	584.0	f0_balb.idr	TTS (NM_001220499)	TTS (NM_001220499)	6753.0	NM_001220499	100045778.0		NM_001220499	ENSMUSG00000110404	Rnf223	9930005F22Rik	ring finger 223	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-27520127-1	chr15	27520027	27520227	+	554.0	f0_balb.idr	intron (NM_020332, intron 1 of 11)	intron (NM_020332, intron 1 of 11)	-51367.0	NR_106065	102466808.0		NR_106065	ENSMUSG00000098416	Mir7117	Gm27729|mmu-mir-7117	microRNA 7117	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-8847519-2	chr16	8847419	8847619	+	609.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081400, intron 3 of 3)	tRNA-Ala-GCY_|tRNA|tRNA	17419.0	NM_001081400	69053.0	Mm.390868	NM_001081400	ENSMUSG00000022507	1810013L24Rik	1110017P05Rik|3010002C02Rik|AA792997|AW124177|Gm19906|R74903	RIKEN cDNA 1810013L24 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-118745665-4	chr2	118745574	118745774	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001301269)	promoter-TSS (NM_001301269)	-84.0	NM_001301269	100043272.0	Mm.398072	NM_001301269	ENSMUSG00000074918	Inafm2	5430417L22Rik	InaF motif containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-137304405-1	chr5	137304305	137304505	+	627.0	f1_c57bl6.idr	intron (NM_001359602, intron 2 of 19)	intron (NM_001359602, intron 2 of 19)	3269.0	NM_031405	83701.0	Mm.387734	NM_031405	ENSMUSG00000037364	Srrt	2810019G02Rik|ASR2A|ASR2B|ASR2C|ASR2D|Ars2|Asr2	serrate RNA effector molecule homolog (Arabidopsis)	protein-coding	-1.23826193677681	-1.21241040182355	-1.22270105026776	-0.934241458926562	-1.23783648736863	-1.21018037537722	-1.22037147302458	-0.929982742503718	0.0323590357436516	0.9924297640193	1
Merged-chr18-34578999-2	chr18	34578899	34579099	+	579.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_177773)	TTS (NM_177773)	116.0	NR_151691	75533.0	Mm.275430	NM_080637	ENSMUSG00000035984	Nme5	1700019D05Rik|Nm23-M5	NME/NM23 family member 5	protein-coding	-0.53957200234276	-0.527827502805041	-0.531677082525443	0.00375101133009315	-0.53883940870504	-0.526959509798966	0.0537841093755231	-0.534127345506642	0.171907830995031	0.951160854050512	1
Merged-chr11-69582025-2	chr11	69581925	69582125	+	714.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001127233, intron 1 of 10)	intron (NM_001127233, intron 1 of 10)	1666.0	NM_001127233	22059.0	Mm.222	NM_011640	ENSMUSG00000059552	Trp53	Tp53|bbl|bfy|bhy|p44|p53	transformation related protein 53	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-9644436-4	chr3	9644340	9644540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34355.0	NM_133218	170753.0	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-58920335-3	chr2	58920208	58920408	+	936.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362394, intron 10 of 13)	L2a|LINE|L2	165124.0	NM_029692	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-5298518-2	chr4	5298418	5298618	+	649.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-333810.0	NR_038183	73872.0	Mm.427301	NR_038183	ENSMUSG00000086066	4930423M02Rik	-	RIKEN cDNA 4930423M02 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-102806134-3	chr14	102806047	102806247	+	884.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	5S|rRNA|rRNA	176485.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-17843452-4	chr5	17843352	17843552	+	864.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159558, intron 1 of 15)	intron (NM_001159558, intron 1 of 15)	6340.0	NM_001159557	12491.0	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 molecule	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-73378965-2	chr14	73378865	73379065	+	650.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008410, intron 1 of 5)	intron (NM_008410, intron 1 of 5)	6324.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-70988286-2	chr17	70988186	70988386	+	546.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023402, intron 1 of 3)	intron (NM_023402, intron 1 of 3)	2230.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-3363671-2	chr5	3363571	3363771	+	914.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 2 of 7)	intron (NM_009873, intron 2 of 7)	19778.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-34217199-3	chr19	34217132	34217332	+	860.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360719)	promoter-TSS (NM_001360719)	-276.0	NM_001360719	76630.0	Mm.130952	NM_029682	ENSMUSG00000024776	Stambpl1	1700095N21Rik|8230401J17Rik|ALMalpha|AMSH-FP	STAM binding protein like 1	protein-coding	2.59675291312572	1.68608216665758	2.84824374468832	2.88398613394037	3.67913565391562	3.92216349915661	4.65314357095861	3.61438774731606	2.26740494600534	0.000280352591186678	0.00699792730039755
Merged-chr11-119952511-3	chr11	119952337	119952537	+	938.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037754, intron 1 of 13)	(TTTTG)n|Simple_repeat|Simple_repeat	9345.0	NM_130862	108100.0	Mm.197534	NM_130862	ENSMUSG00000025372	Baiap2	IRSp53|R75030	brain-specific angiogenesis inhibitor 1-associated protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-5263262-2	chr15	5263162	5263362	+	915.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19075.0	NM_008965	19219.0	Mm.18509	NM_008965	ENSMUSG00000039942	Ptger4	EP4|Ptgerep4	prostaglandin E receptor 4 (subtype EP4)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-25433731-3	chr10	25433614	25433814	+	658.133362	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013511, intron 1 of 19)	intron (NM_013511, intron 1 of 19)	25346.0	NM_013511	13822.0	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26500473-4	chr17	26500350	26500550	+	916.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR11A2|LTR|ERVK	8022.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	3.31231558590805	2.39030204060893	2.47204734536252	2.40150506263041	3.3384087156913	3.36442412407956	3.08369127257569	2.89565853633853	0.82324716894391	0.223066177111874	0.714791840691861
Merged-chr5-101835404-2	chr5	101835304	101835504	+	767.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172882, exon 67 of 67)	3' UTR (NM_172882, exon 67 of 67)	70274.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-63948593-4	chr11	63948495	63948695	+	940.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-15631.0	NR_131111	78883.0	Mm.410764	NR_131111	ENSMUSG00000086359	9630013K17Rik	-	RIKEN cDNA 9630013K17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-76541146-3	chr11	76541039	76541239	+	871.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198894, intron 1 of 22)	intron (NM_198894, intron 1 of 22)	30245.0	NM_198895	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-70326789-4	chr16	70326684	70326884	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028803, intron 1 of 15)	L1MD2|LINE|L1	12835.0	NM_028803	74185.0	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	3.32166277439919	2.29955773324677	2.76511257524412	2.45276001745656	2.75701407864902	3.26333360748793	1.82865324690544	2.98241599997828	0.0492249098453015	0.948594072269458	0.998431161219273
Merged-chr14-61972254-2	chr14	61972155	61972355	+	553.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-289882.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-39321627-6	chr10	39321483	39321683	+	924.944458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48216.0	NM_001122892	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-8709915-2	chr15	8709815	8710015	+	756.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_148938, intron 1 of 9)	intron (NM_148938, intron 1 of 9)	892.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-134566569-2	chr7	134566469	134566669	+	671.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-104118.0	NM_001033420	330662.0	Mm.436572	NM_001033420	ENSMUSG00000058325	Dock1	9130006G06Rik|AI854900|D630004B07Rik|b2b3190Clo	dedicator of cytokinesis 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28391859-3	chr7	28391778	28391978	+	873.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026042, intron 1 of 3)	PB1D9|SINE|Alu	812.0	NM_026042	67224.0	Mm.41647	NM_026042	ENSMUSG00000003444	Med29	2810405O22Rik|AU020902|Ixl	mediator complex subunit 29	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-84339812-2	chr10	84339712	84339912	+	885.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	100659.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-43669587-4	chr19	43669489	43669689	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145156, intron 1 of 3)	intron (NM_145156, intron 1 of 3)	5292.0	NM_145156	246696.0	Mm.23827	NM_145156	ENSMUSG00000040414	Slc25a28	Mfrn2|Mrs3/4	solute carrier family 25, member 28	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-39278531-4	chr6	39278427	39278627	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-71754.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98808582-2	chr11	98808482	98808682	+	883.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001361931)	TTS (NM_001361931)	-1226.0	NM_138660	192160.0	Mm.40120	NM_138660	ENSMUSG00000078676	Casc3	Btz|Mln51	cancer susceptibility candidate 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128459659-2	chr10	128459559	128459759	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_106183)	TTS (NR_106183)	423.0	NM_001114097	68094.0	Mm.417338	NM_198160	ENSMUSG00000025369	Smarcc2	5930405J04Rik	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-35725378-2	chr8	35725288	35725488	+	721.0	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	101171.0	NM_027998	71908.0	Mm.37817	NM_027998	ENSMUSG00000055976	Cldn23	2310014B08Rik	claudin 23	protein-coding	2.48717343627642	1.36979425559815	3.5006982316056	3.24049113589499	2.97852698038012	1.68197441557752	1.62290117805191	2.15188407015085	-1.20140947341389	0.199377984900739	0.682994044947012
Merged-chr4-139576071-1	chr4	139575971	139576171	+	544.0	f1_balb.idr	intron (NM_001205173, intron 1 of 8)	intron (NM_001205173, intron 1 of 8)	1351.0	NM_001205173	212632.0	Mm.30464	NM_183148	ENSMUSG00000041025	Iffo2	C79267	intermediate filament family orphan 2	protein-coding	1.84980896674651	2.43402983572351	2.02586919678004	2.40028791670819	1.86722657249818	1.36139298442494	3.22404558204384	3.68821105563129	1.29882128306674	0.155008358963441	0.610178472914225
Merged-chr11-55463163-4	chr11	55463066	55463266	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1958.0	NM_009720	11927.0	Mm.217759	NM_009720	ENSMUSG00000018585	Atox1	AI256639|Atx1	antioxidant 1 copper chaperone	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-40995780-3	chr19	40995670	40995870	+	875.2666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1235.0	NM_008528	17060.0	Mm.9749	NM_008528	ENSMUSG00000061132	Blnk	BASH|Bca|Ly-57|Ly57|Lyw-57|SLP-65	B cell linker	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80178202-2	chr10	80178102	80178302	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 1 of 4)	intron (NR_038088, intron 1 of 4)	-1280.0	NM_007909	13637.0	Mm.1478	NM_007909	ENSMUSG00000003070	Efna2	CEK7L|Elf1|Epl6|Eplg6|Lerk6	ephrin A2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-56691492-3	chr6	56691386	56691586	+	946.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	13213.0	NM_025520	66373.0	Mm.25642	NM_025520	ENSMUSG00000091625	Lsm5	2010208O10Rik|2310034K10Rik	LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-138304675-4	chr4	138304559	138304759	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007838)	promoter-TSS (NM_007838)	-79.0	NM_007838	13200.0	Mm.7236	NM_007838	ENSMUSG00000028757	Ddost	-	dolichyl-di-phosphooligosaccharide-protein glycotransferase	protein-coding	7.77365372437146	7.94882274279558	8.2744510599006	8.37787293300174	7.89973117354053	8.39723756200157	8.66815493982783	8.25523428244091	0.220997519859884	0.187026821475631	0.664545252931279
Merged-chr10-7833210-3	chr10	7833100	7833300	+	802.361084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172785, intron 1 of 5)	intron (NM_172785, intron 1 of 5)	730.0	NM_172785	237256.0	Mm.140055	NM_172785	ENSMUSG00000039981	Zc3h12d	D730019B10Rik|TFL	zinc finger CCCH type containing 12D	protein-coding	-0.224904678608368	-0.215237544961687	0.0608394444993188	-0.22089246584643	-0.22431189242128	-0.214509230998156	0.179011803796819	0.237724789681183	1.75221177457614	0.479536244394928	1
Merged-chr1-93754092-4	chr1	93753989	93754189	+	937.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_174874)	promoter-TSS (NM_174874)	749.0	NM_025920	67026.0	Mm.272356	NM_025920	ENSMUSG00000026279	Thap4	2010320B01Rik	THAP domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-88524266-3	chr17	88524164	88524364	+	636.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MYSERV6-int|LTR|ERVK	-5860.0	NM_028658	73825.0	Mm.271817	NM_028658	ENSMUSG00000034709	Ppp1r21	1110018J12Rik|AI426045|AW550781|Ccdc128|Klraq1	protein phosphatase 1, regulatory subunit 21	protein-coding	2.21198077285649	2.23687105222218	1.00964254680904	0.989025380686887	1.8854307166314	2.5333242336378	1.27323697353768	1.23609186356632	0.225365219315197	0.853049523185506	0.998431161219273
Merged-chr5-32734144-2	chr5	32734036	32734236	+	907.099976	f0_balb.idr|f1_balb.idr	Intergenic	RLTR20C2_MM|LTR|ERVK	12206.0	NM_001347332	320951.0	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-154305613-4	chr3	154305529	154305729	+	875.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010713)	TTS (NM_010713)	24931.0	NM_010713	16875.0	Mm.15530	NM_010713	ENSMUSG00000096225	Lhx8	L3|Lhx7	LIM homeobox protein 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101260436-2	chr15	101260336	101260536	+	613.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	LFSINE_Vert|SINE|tRNA	-6410.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-33826518-2	chr17	33826413	33826613	+	659.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_103515)	TTS (NR_103515)	1868.0	NR_103514	66416.0	Mm.29513	NM_023202	ENSMUSG00000041881	Ndufa7	14.5kDa|2400007M02Rik|CI-B14.5a	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7 (B14.5a)	protein-coding	1.77291629830673	1.83558092489094	2.03032511995906	1.86125095979169	1.66708390055228	1.49086574516917	2.15298622691505	2.0875461161624	0.0236274225750115	0.9807054941333	0.998431161219273
Merged-chr3-39160011-2	chr3	39159911	39160111	+	809.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	273071.0	NM_183221	329628.0	Mm.316210	NM_183221	ENSMUSG00000046743	Fat4	6030410K14Rik|9430004M15	FAT atypical cadherin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80377673-2	chr7	80377572	80377772	+	824.291626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_010194)	TTS (NM_010194)	-6297.0	NM_172903	140481.0	Mm.269245	NM_172903	ENSMUSG00000038886	Man2a2	1700052O22Rik|4931438M07Rik|AI480988|MX|Man IIx	mannosidase 2, alpha 2	protein-coding	0.0453986207664265	0.815449672317416	0.53516220716689	0.611877196040209	0.0466234497314471	0.0663191021085808	0.0599381730165994	0.0544720611173537	-4.10887495009972	0.0529400432638689	1
Merged-chr6-22124722-4	chr6	22124614	22124814	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081351, intron 10 of 21)	intron (NM_001081351, intron 10 of 21)	138804.0	NM_001081351	214642.0	Mm.221404	NM_001081351	ENSMUSG00000062980	Cped1	6720481P07|A430107O13Rik|AI552584	cadherin-like and PC-esterase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95042614-4	chr3	95042516	95042716	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008951)	promoter-TSS (NM_008951)	-2.0	NM_008951	19185.0	Mm.2261	NM_008951	ENSMUSG00000005625	Psmd4	Af1|Mcb1|angiocidin	proteasome (prosome, macropain) 26S subunit, non-ATPase, 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-80025893-4	chr15	80025779	80025979	+	943.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11071.0	NM_011057	18591.0	Mm.144089	NM_011057	ENSMUSG00000000489	Pdgfb	PDGF-B|Sis	platelet derived growth factor, B polypeptide	protein-coding	0.159206446816901	0.199267425935433	0.942190577868557	0.176466628848343	0.544486681473313	0.202087048870767	1.76839489392999	0.178243429442402	1.9175292924649	0.312193191492025	0.813683249872461
Merged-chr15-38404095-3	chr15	38404013	38404213	+	897.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	86434.0	NR_105916	102465574.0		NR_105916	ENSMUSG00000099110	Mir6951	Gm27765|mmu-mir-6951	microRNA 6951	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-117883298-2	chr4	117883198	117883398	+	689.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045570, exon 1 of 9)	non-coding (NR_045570, exon 1 of 9)	178.0	NR_045570	53418.0	Mm.123843	NM_017377	ENSMUSG00000028541	B4galt2	Ggtb2	UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-93709118-2	chr16	93709018	93709218	+	676.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-2789.0	NM_026700	70028.0	Mm.23230	NM_026700	ENSMUSG00000022946	Dopey2	0610038M01Rik|2610510B01Rik|AI503246|C21orf5|mKIAA0933	dopey family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-25589331-2	chr2	25589231	25589431	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001024616, intron 7 of 14)	intron (NM_001024616, intron 7 of 14)	-9232.0	NM_001005424	381353.0	Mm.379511	NM_001005424	ENSMUSG00000029419	Gm996	Ajm1	predicted gene 996	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84039147-2	chr8	84039050	84039250	+	692.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016671, intron 6 of 13)	intron (NM_016671, intron 6 of 13)	3425.0	NM_016671	50931.0	Mm.38386	NM_016671	ENSMUSG00000005465	Il27ra	CRL1|IL-27R|Tccr|WSX-1|Wsx1|zcytor1	interleukin 27 receptor, alpha	protein-coding	1.32740912024492	1.61310939380048	1.55629730735748	1.10904670111606	1.07624161385755	1.49470670179222	1.44505454760612	1.40164710561977	-0.213303486311993	0.856525825433973	0.998431161219273
Merged-chr19-59194168-3	chr19	59194013	59194213	+	681.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-24084.0	NM_009501	22326.0	Mm.23801	NM_009501	ENSMUSG00000006270	Vax1	-	ventral anterior homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-170896690-2	chr1	170896590	170896790	+	556.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11150.0	NM_023173	80915.0	Mm.34365	NM_023173	ENSMUSG00000026659	Dusp12	1190004O14Rik|AA027408|AW049275|ESTM36|LMW-DSP4|T-DSP4|VH1|mVH1	dual specificity phosphatase 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27354956-4	chr2	27354845	27355045	+	926.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_133905, intron 1 of 29)	intron (NR_133905, intron 1 of 29)	72663.0	NR_133905	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120316900-2	chr11	120316800	120317000	+	664.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30513.0	NR_105900	102465564.0		NR_105900	ENSMUSG00000098955	Mir6935	Gm27344|mmu-mir-6935	microRNA 6935	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32082534-2	chr2	32082434	32082634	+	818.333374	f1_balb.idr|f1_c57bl6.idr	intron (NR_151493, intron 2 of 5)	intron (NR_151493, intron 2 of 5)	1171.0	NM_175511	241303.0	Mm.250441	NM_175511	ENSMUSG00000050592	Fam78a	A130092J06Rik	family with sequence similarity 78, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-113845602-2	chr5	113845507	113845707	+	558.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_011779, intron 9 of 10)	intron (NM_011779, intron 9 of 10)	-15106.0	NM_009151	20345.0	Mm.332590	NM_009151	ENSMUSG00000048163	Selplg	CD162|Psgl-1|Psgl1|Selp1|Selpl	selectin, platelet (p-selectin) ligand	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-8312519-3	chr5	8312386	8312586	+	897.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001007220, intron 3 of 28)	MIRc|SINE|MIR	55674.0	NM_001007221	11496.0	Mm.275895	NM_001007220	ENSMUSG00000040537	Adam22	2900022I03Rik|AI854032|MDC2	a disintegrin and metallopeptidase domain 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-97790295-4	chr15	97790240	97790440	+	841.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026353, intron 2 of 2)	intron (NM_026353, intron 2 of 2)	5975.0	NM_026353	67739.0	Mm.28955	NM_026353	ENSMUSG00000081534	Slc48a1	4930570C03Rik	solute carrier family 48 (heme transporter), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134615449-4	chr6	134615340	134615540	+	973.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026345, intron 3 of 3)	intron (NM_026345, intron 3 of 3)	17048.0	NM_026345	67729.0	Mm.57648	NM_026345	ENSMUSG00000032718	Mansc1	9130403P13Rik	MANSC domain containing 1	protein-coding	-1.53645105050735	-1.50512770740433	-1.51460014489938	-1.52238108709168	-1.25060007796668	-1.50307499068393	-1.36341110676307	-1.52098830215942	1.91856433096655	0.581453450570385	1
Merged-chr8-84427416-1	chr8	84427316	84427516	+	739.0	f1_balb.idr	intron (NM_001252060, intron 1 of 47)	ORR1D2|LTR|ERVL-MaLR	12052.0	NM_001252061	12286.0	Mm.334658	NM_007578	ENSMUSG00000034656	Cacna1a	APCA|BI|Caca1a|Cacnl1a4|Cav2.1|Ccha1a|EA2|FHM|HPCA|MHP|MHP1|SCA6|alpha1A|la|nmf352|rkr|smrl|tg	calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	protein-coding	0.6741406894496	0.739463940201274	1.35257541504223	0.702530573354138	2.30264240115436	1.95445462266186	1.51674354524232	0.705430729768717	3.08507029460805	0.0390526375953449	0.281738952397138
Merged-chr7-99409801-1	chr7	99409701	99409901	+	760.0	f1_c57bl6.idr	intron (NM_001362166, intron 3 of 18)	intron (NM_001362166, intron 3 of 18)	28283.0	NM_001362166	233552.0	Mm.286317	NM_201352	ENSMUSG00000035314	Gdpd5	BC024955|Gde2	glycerophosphodiester phosphodiesterase domain containing 5	protein-coding	-1.8418762459921	-1.8125357239735	-1.82140854000656	-1.82869693527674	-1.56059678980999	-1.8106129477253	-1.81939992894326	-1.82739231600805	1.3620893379502	0.699511506488145	1
Merged-chr3-30860878-3	chr3	30860766	30860966	+	976.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286994, intron 1 of 3)	Lx8b|LINE|L1	4916.0	NM_001286994	71862.0	Mm.272019	NM_027965	ENSMUSG00000037661	Gpr160	1700025D19Rik|GPCR150	G protein-coupled receptor 160	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-43879990-4	chr5	43879899	43880099	+	985.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007646, intron 1 of 7)	T-rich|Low_complexity|Low_complexity	11190.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	3.02082076199373	2.60478518066236	3.34412378365066	2.70502766402947	2.48367673379378	3.22425917145214	3.77731860679924	2.71846381464214	0.362294246928732	0.594248452698256	0.9706660979479
Merged-chr13-107781969-4	chr13	107781866	107782066	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 3 of 14)	intron (NM_145456, intron 3 of 14)	94569.0	NR_045900	72257.0	Mm.234155	NR_045900	ENSMUSG00000102000	1700006H21Rik	-	RIKEN cDNA 1700006H21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126833175-4	chr8	126833046	126833246	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15874.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-156459844-4	chr1	156459750	156459950	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009230, intron 2 of 15)	intron (NM_009230, intron 2 of 15)	14478.0	NM_009230	20652.0	Mm.28099	NM_009230	ENSMUSG00000026600	Soat1	8430426K15Rik|ACAT-1|AW550831|Acact|ald|hid	sterol O-acyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-37537920-2	chr9	37537820	37538020	+	720.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_136939, exon 7 of 7)	non-coding (NR_136939, exon 7 of 7)	-1335.0	NM_020518	57276.0	Mm.27478	NM_020518	ENSMUSG00000001943	Vsig2	1190004B15Rik|2210413P10Rik|AU040484|CTX|Ctm	V-set and immunoglobulin domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-26165090-1	chr11	26164990	26165190	+	616.0	f0_c57.idr	intron (NR_027973, intron 1 of 5)	intron (NR_027973, intron 1 of 5)	-37150.0	NR_105791	102466154.0		NR_105791	ENSMUSG00000099015	Mir6372	Gm27358|mmu-mir-6372	microRNA 6372	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133415109-2	chr4	133415024	133415224	+	681.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016981, intron 2 of 11)	intron (NM_016981, intron 2 of 11)	45348.0	NR_039582	100628620.0		NR_039582	ENSMUSG00000092745	Mir5122	mmu-mir-5122|mu-mir-5122	microRNA 5122	ncRNA	-0.290792822991201	-0.274028028484528	-0.27948617478866	-0.283719770910831	0.234399717246101	-0.272802118054215	-0.278279547610063	0.66221457699774	3.93139925746095	0.110955754688977	1
Merged-chr5-35756541-2	chr5	35756441	35756641	+	730.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1339.0	NM_001177697	231148.0	Mm.254446	NM_177678	ENSMUSG00000029095	Ablim2	AI606905|C230091L11	actin-binding LIM protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-36878391-1	chr7	36878291	36878491	+	710.0	f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	180273.0	NM_172298	243931.0	Mm.44141	NM_172298	ENSMUSG00000021217	Tshz3	A630038G13Rik|Tsh3|Zfp537|mKIAA1474|teashirt3	teashirt zinc finger family member 3	protein-coding	-0.208283783115327	-0.190719793063729	-0.196438776803222	0.56960718211407	-0.207177803637276	-0.189435193761239	-0.195174548196752	0.578527616610749	0.0282038014051437	0.990994131209618	1
Merged-chr8-117295824-2	chr8	117295724	117295924	+	587.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	38805.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-16219515-2	chr19	16219415	16219615	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008139, intron 1 of 6)	intron (NM_008139, intron 1 of 6)	55417.0	NR_033228	595139.0	Mm.405662	NR_033228		E030024N20Rik	9030417F11Rik|Ppia-ps8	peptidylprolyl isomerase A pseudogene 8	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-118093454-2	chr10	118093388	118093588	+	625.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48299.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	0.654761932188679	1.22586638812248	1.29998316121511	0.669270863687552	1.28851033896666	1.23663219166765	1.3124077507999	0.670783898646421	0.66726907636616	0.663431134518898	0.991657818949578
Merged-chr3-84175445-3	chr3	84175342	84175542	+	807.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_036654)	TTS (NR_036654)	804.0	NR_036654	624713.0	Mm.442604	NR_036654		Gm6525	EG624713	ribosomal protein L36a pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-102902439-2	chr14	102902339	102902539	+	549.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	80193.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-62043381-4	chr15	62043277	62043477	+	906.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132746, intron 1 of 6)	intron (NR_132746, intron 1 of 6)	4120.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-102069442-4	chr5	102069334	102069534	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 1 of 66)	CpG	487.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-20125926-1	chr13	20125826	20126026	+	657.333313	f1_c57bl6.idr	intron (NM_080288, intron 1 of 21)	RLTRETN_Mm|LTR|ERVK	35419.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	-2.18292257394068	-2.15545247547656	-2.03304972317742	-2.17058342868585	-2.18099422382073	-2.1536522739386	-2.16187909550322	-2.16936197735154	-0.683654500252594	0.846597994014493	1
Merged-chr16-90142411-1	chr16	90142311	90142511	+	607.0	f0_balb.idr	non-coding (NR_033476, exon 1 of 1)	non-coding (NR_033476, exon 1 of 1)	174.0	NR_033476	100038709.0	Mm.484070	NR_033476		Gm10789	-	predicted gene 10789	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-108640122-3	chr12	108639923	108640123	+	717.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163396, intron 2 of 14)	intron (NM_001163396, intron 2 of 14)	4270.0	NM_001163396	14026.0	Mm.238841	NM_007965	ENSMUSG00000021262	Evl	AI528774|b2b2600Clo	Ena-vasodilator stimulated phosphoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-26685299-1	chr8	26685199	26685399	+	711.333313	f1_c57bl6.idr	Intergenic	MER58B|DNA|hAT-Charlie	139124.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	3.16359633583611	3.2983291774019	4.00024759243919	2.39827652543018	3.19004043755336	2.40807722903311	3.45569729984884	1.82061504771913	-0.763209125046443	0.298221550390627	0.800257675359925
Merged-chr7-140063311-3	chr7	140063216	140063416	+	725.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14228.0	NM_001347609	17703.0	Mm.4816	NM_010836	ENSMUSG00000025469	Msx3	AI323377	msh homeobox 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-88218664-2	chr1	88218564	88218764	+	672.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_201641, exon 5 of 5)	3' UTR (NM_201641, exon 5 of 5)	6705.0	NM_201645	394436.0	Mm.300095	NM_201645	ENSMUSG00000089960	Ugt1a1	Gnt1|UDPGT 1-1|UGT1A01|Udpgt-1a|UgtBr1	UDP glucuronosyltransferase 1 family, polypeptide A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-103281108-2	chr15	103281008	103281208	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019817, intron 1 of 8)	intron (NM_019817, intron 1 of 8)	-4017.0	NR_029766	724064.0		NR_029766	ENSMUSG00000065560	Mir148b	Mirn148b|mir-148b	microRNA 148b	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152581305-4	chr1	152581215	152581415	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 3 of 17)	intron (NM_016846, intron 3 of 17)	43902.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-168981140-4	chr2	168981045	168981245	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	2876.0	NR_040326	75508.0	Mm.271256	NR_040326	ENSMUSG00000086348	1700017J07Rik	-	RIKEN cDNA 1700017J07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-25167609-4	chr9	25167526	25167726	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15845.0	NM_020586	80517.0	Mm.142843	NM_020586	ENSMUSG00000008429	Herpud2	5031400M07Rik|AB041580	HERPUD family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-28024450-6	chr15	28024285	28024485	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081302, intron 1 of 56)	CpG	1463.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-54862133-4	chr12	54862054	54862254	+	801.69165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007688, intron 1 of 3)	intron (NM_007688, intron 1 of 3)	723.0	NM_007688	12632.0	Mm.276826	NM_007688	ENSMUSG00000062929	Cfl2	-	cofilin 2, muscle	protein-coding	2.32105826646967	2.23642795252925	1.85126216584829	2.23058458424186	2.65468430945066	2.25226012780133	1.86399709096547	2.71132475914314	0.590650267701578	0.48585201217557	0.932344766211842
Merged-chr12-91778637-3	chr12	91778544	91778744	+	987.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 1 of 6)	CpG	7792.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-158178283-2	chr2	158178183	158178383	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1G1|LTR|ERVL-MaLR	-13725.0	NR_036606	73399.0	Mm.416861	NR_036606	ENSMUSG00000078957	1700060C20Rik	-	RIKEN cDNA 1700060C20 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-64727467-2	chr17	64727367	64727567	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008549, intron 16 of 21)	L1_Mus3|LINE|L1	-39644.0	NR_105051	101202683.0	Mm.393309	NR_105051		Dreh	-	down-regulated in hepatocellular carcinoma	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-142526956-3	chr3	142526834	142527034	+	724.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3402.0	NM_001083312	229900.0	Mm.45740	NM_145545	ENSMUSG00000040253	Gbp7	9830147J24Rik	guanylate binding protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-47865695-4	chr19	47865620	47865820	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026619)	promoter-TSS (NM_026619)	-74.0	NM_026619	68214.0	Mm.63791	NM_026619	ENSMUSG00000025069	Gsto2	1700020F09Rik|4930425C18Rik|GSTO 2-2	glutathione S-transferase omega 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-130801214-2	chr7	130801114	130801314	+	748.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081038, intron 9 of 15)	RSINE1|SINE|B4	27145.0	NM_001081038	330660.0	Mm.271550	NM_001081038	ENSMUSG00000040298	Btbd16	E330040A16Rik	BTB (POZ) domain containing 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-34651568-4	chr13	34651461	34651661	+	994.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025831, intron 1 of 4)	intron (NM_025831, intron 1 of 4)	1120.0	NM_025831	66895.0	Mm.28943	NM_025831	ENSMUSG00000021411	Pxdc1	1300014I06Rik	PX domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-59472302-1	chr1	59472202	59472402	+	578.0	f0_c57.idr	Intergenic	Intergenic	-9845.0	NM_008057	14369.0	Mm.297906	NM_008057	ENSMUSG00000041075	Fzd7	Fz7	frizzled class receptor 7	protein-coding	-0.0154204630587185	1.10105119401801	0.00414914322748289	1.0537373846064	-0.0135681556109263	0.0154564635479548	0.00620414830384147	-0.00183439668510643	-4.41599765215341	0.0410945054334732	1
Merged-chr9-62886092-2	chr9	62885992	62886192	+	567.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019663, intron 12 of 13)	PB1D11|SINE|Alu	-24068.0	NR_003965	677044.0	Mm.422004	NR_003965	ENSMUSG00000074250	Gm10653	-	ribsomal protein S2 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106027427-2	chr11	106027327	106027527	+	562.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037712, intron 11 of 12)	intron (NM_001037712, intron 11 of 12)	-9445.0	NM_027946	71833.0	Mm.307455	NM_027946	ENSMUSG00000049354	Dcaf7	1700012F10Rik|2610037L01Rik|C86529|HAN11|Wdr68	DDB1 and CUL4 associated factor 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-74992495-2	chr11	74992395	74992595	+	671.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_001002764, intron 10 of 18)	intron (NM_001002764, intron 10 of 18)	66623.0	NM_001002764	103677.0	Mm.288460	NM_001002764	ENSMUSG00000038290	Smg6	AI317223|AU041178	Smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-78073550-3	chr9	78073448	78073648	+	638.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	21590.0	NM_008103	14531.0	Mm.1400	NM_008103	ENSMUSG00000023333	Gcm1	GCMa|Gcm-rs2|Gcm1-rs1|glide	glial cells missing homolog 1	protein-coding	1.70075067555796	1.72627607958446	2.1187336575177	2.60177167776907	1.71447036093142	1.25783851438802	2.0047861020015	2.68464107777402	-0.143552663274658	0.887209414788716	0.998431161219273
Merged-chr7-38155990-2	chr7	38155899	38156099	+	937.416626	f0_c57.idr|f1_c57bl6.idr	Intergenic	RMER6A|LTR|ERVK	-27218.0	NM_001085385	72244.0	Mm.187554	NM_028166		1600014C10Rik	AI428873	RIKEN cDNA 1600014C10 gene	protein-coding	2.64474183540456	3.643114953412	3.57903593245758	3.82235483743245	1.15706607910805	2.52344424930658	1.28821900266934	1.23694673510386	-3.69425428752031	6.98134626558494e-05	0.00231387272084221
Merged-chr4-133615225-2	chr4	133615147	133615347	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001017968, exon 3 of 8)	exon (NM_001017968, exon 3 of 8)	-13079.0	NM_018754	55948.0	Mm.44482	NM_018754	ENSMUSG00000047281	Sfn	Er|Mme1|Ywhas	stratifin	protein-coding	0.141069137099507	-0.301545143392151	-0.305595324435447	-0.308711648044122	0.316086154866761	-0.300630453414372	-0.304703098021956	-0.147678293297392	0.861758898464609	0.729277093611691	1
Merged-chr6-123149479-2	chr6	123149379	123149579	+	707.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23544.0	NM_001004159	381809.0	Mm.333372	NM_001004159	ENSMUSG00000067767	Clec4b2	Aplra1|F830043G12Rik|mDCAR1	C-type lectin domain family 4, member b2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-99194768-3	chr11	99194625	99194825	+	861.533325	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR24|LTR|ERV1	36292.0	NM_020618	57376.0	Mm.379086	NM_020618	ENSMUSG00000037935	Smarce1	2810417B20Rik|5830412H02Rik|9030408N19Rik|Baf27	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1	protein-coding	1.54306443620258	1.76793343474092	2.62031346002531	1.87960927530239	3.13220306011589	3.36529051376796	4.11594686253519	2.7855618345699	2.67728717221503	0.00065098487116332	0.0138484334826552
Merged-chr1-132337099-2	chr1	132336999	132337199	+	653.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	20974.0	NM_028778	74137.0	Mm.100666	NM_028778	ENSMUSG00000009772	Nuak2	1200013B22Rik|Omphk2|Snark|mKIAA0537	NUAK family, SNF1-like kinase, 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32842739-2	chr2	32842639	32842839	+	739.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113569, intron 1 of 19)	B3A|SINE|B2	4493.0	NM_009295	20910.0	Mm.278865	NM_009295	ENSMUSG00000026797	Stxbp1	AI317162|AI326233|MMS10-G|Ms10g|Munc-18a|Munc18-1|N-sec1|Rb-sec1|Sxtbp1|Unc18-1|Unc18h|nsec1	syntaxin binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81191962-2	chr10	81191862	81192062	+	610.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001190473, intron 7 of 8)	intron (NM_001190473, intron 7 of 8)	-2729.0	NR_015477	69678.0	Mm.81562	NR_015477		Atcayos	2310050B05Rik	ataxia, cerebellar, Cayman type, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89315800-2	chr3	89315700	89315900	+	859.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010108, intron 4 of 4)	intron (NM_010108, intron 4 of 4)	7079.0	NM_010108	13638.0	Mm.331159	NM_010108	ENSMUSG00000028039	Efna3	AW494418|EFL-2|Ehk1-L|Epl3|LERK-3	ephrin A3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-114898930-3	chr9	114898840	114899040	+	680.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_175380)	TTS (NM_175380)	35047.0	NM_175380	333433.0	Mm.38198	NM_175380	ENSMUSG00000050627	Gpd1l	2210409H23Rik|D9Ertd660e	glycerol-3-phosphate dehydrogenase 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-38289153-4	chr15	38289056	38289256	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	C-rich|Low_complexity|Low_complexity	10744.0	NM_001357677	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-13454755-4	chr1	13454664	13454864	+	925.6083369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-80681.0	NM_008678	17978.0	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28515980-3	chr17	28515849	28516049	+	878.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14912.0	NM_026290	67645.0	Mm.46170	NM_026290	ENSMUSG00000024223	Armc12	4930511I11Rik|AV041658	armadillo repeat containing 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-117158785-4	chr5	117158686	117158886	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081308, intron 1 of 19)	intron (NM_001081308, intron 1 of 19)	25198.0	NM_183306	330177.0	Mm.24343	NM_183306	ENSMUSG00000061288	Taok3	2900006A08Rik|A130052D22|A430105I05Rik	TAO kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-5357047-3	chr9	5356960	5357160	+	880.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009808, intron 8 of 10)	intron (NM_009808, intron 8 of 10)	11584.0	NM_009808	12364.0	Mm.42163	NM_009808	ENSMUSG00000025887	Casp12	-	caspase 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-107892767-2	chr13	107892667	107892867	+	584.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2703.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-93069502-4	chr1	93069377	93069577	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001294150, intron 9 of 46)	intron (NM_001294150, intron 9 of 46)	13003.0	NM_001294150	16560.0	Mm.276408	NM_008440	ENSMUSG00000014602	Kif1a	ATSV|C630002N23Rik|Gm1626|Kns1	kinesin family member 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-95503819-3	chr11	95503803	95504003	+	881.900024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10662.0	NM_130858	104079.0	Mm.22970	NM_130858	ENSMUSG00000046719	Nxph3	-	neurexophilin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71313270-2	chr8	71313224	71313424	+	776.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001142322, intron 2 of 39)	PB1D7|SINE|Alu	40610.0	NM_001142323	17925.0	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	-0.381867199937758	-0.36745553283659	-0.372162842995199	-0.375804001319747	-0.38096376045336	0.285045604222459	-0.371123449755466	0.290385021124618	3.74277403244201	0.146749789328662	1
Merged-chr17-74434769-4	chr17	74434646	74434846	+	903.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033367, intron 7 of 8)	intron (NM_001033367, intron 7 of 8)	24362.0	NM_001033367	268973.0	Mm.311884	NM_001033367	ENSMUSG00000039193	Nlrc4	9530011P19Rik|CLAN|CLAN1|CLANA|CLANB|CLANC|CLAND|Card12|IPAF	NLR family, CARD domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101425038-4	chr11	101424936	101425136	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172566)	promoter-TSS (NM_172566)	-49.0	NM_172566	217201.0	Mm.305941	NM_172566	ENSMUSG00000035007	Rundc1	AW125546|D930024B17	RUN domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-8756046-2	chr19	8755946	8756146	+	732.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001167799)	TTS (NM_001167799)	923.0	NR_132423	102640359.0	Mm.440831	NR_132423		1700023D09Rik	AV208457	RIKEN cDNA 1700023D09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-141477005-1	chr3	141476905	141477105	+	658.0	f0_balb.idr	intron (NM_001293561, intron 1 of 16)	intron (NM_001293561, intron 1 of 16)	11441.0	NM_009472	22253.0	Mm.24430	NM_009472	ENSMUSG00000059921	Unc5c	B130051O18Rik|Unc5h3|rcm	unc-5 netrin receptor C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27728702-2	chr2	27728602	27728802	+	676.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290482, intron 1 of 9)	intron (NM_001290482, intron 1 of 9)	18119.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-126468911-2	chr2	126468811	126469011	+	619.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359975, intron 3 of 27)	intron (NM_001359975, intron 3 of 27)	22642.0	NM_001080944	241633.0	Mm.222235	NM_001080944	ENSMUSG00000060131	Atp8b4	Im	ATPase, class I, type 8B, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-25006877-4	chr19	25006788	25006988	+	809.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028785, intron 1 of 47)	intron (NM_028785, intron 1 of 47)	7359.0	NM_028785	76088.0	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	2.97363020235323	3.40419583876576	2.84645567939346	2.76665925606891	2.91968960653082	1.96967907404034	2.86861049161597	3.29195550755443	-0.295294195103176	0.670364682025198	0.99359666617512
Merged-chr1-172474549-3	chr1	172474433	172474633	+	665.333313	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029612)	promoter-TSS (NM_029612)	-827.0	NM_029612	98365.0	Mm.150050	NM_029612	ENSMUSG00000026548	Slamf9	2310026I04Rik|AI462096|CD2F-10|CD84-H1|Cd2f10|SF2001	SLAM family member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-112627638-3	chr12	112627533	112627733	+	772.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007421, intron 1 of 12)	intron (NM_007421, intron 1 of 12)	7586.0	NM_007421	11565.0	Mm.3440	NM_007421	ENSMUSG00000011148	Adssl1	AI528595|Adss|Adss1	adenylosuccinate synthetase like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-67008747-7	chr14	67008679	67008879	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009761)	promoter-TSS (NM_009761)	98.0	NM_009761	12177.0	Mm.29820	NM_009761	ENSMUSG00000022051	Bnip3l	C86132|D14Ertd719e|Nip3L|Nix	BCL2/adenovirus E1B interacting protein 3-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-88865090-3	chr15	88864938	88865138	+	745.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_145478, exon 6 of 6)	3' UTR (NM_145478, exon 6 of 6)	2844.0	NM_145478	223775.0	Mm.400129	NM_145478	ENSMUSG00000035828	Pim3	BC026639|Kid1	proviral integration site 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-150786703-4	chr2	150786621	150786821	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153781)	promoter-TSS (NM_153781)	-75.0	NM_153781	110078.0	Mm.222584	NM_153781	ENSMUSG00000033059	Pygb	-	brain glycogen phosphorylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85489392-4	chr12	85489265	85489465	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TGG)n|Simple_repeat|Simple_repeat	15475.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-31877786-3	chr11	31877662	31877862	+	850.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026252, intron 1 of 9)	intron (NM_026252, intron 1 of 9)	6822.0	NM_026252	67579.0	Mm.339792	NM_026252	ENSMUSG00000020300	Cpeb4	Cpe-bp4|Cpeb-4|mCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding	3.36615378357718	4.27906686444873	4.49097604232738	3.38021788339482	2.78859093907584	4.70455460391838	4.38471315074244	3.19422378083518	0.0236697779505851	0.967504202833706	0.998431161219273
Merged-chr4-59035268-4	chr4	59035290	59035490	+	923.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025277, intron 1 of 2)	CpG	234.0	NM_025277	14700.0	Mm.41780	NM_025277	ENSMUSG00000038607	Gng10	AV006524	guanine nucleotide binding protein (G protein), gamma 10	protein-coding	0.188403952311751	0.84819964692814	0.900685289332643	0.197466235992372	0.344625133142227	0.211480168555644	0.688627425727173	0.198416399601389	-1.28918277737762	0.512445031362603	1
Merged-chr5-103849981-2	chr5	103849881	103850081	+	564.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133919, intron 19 of 19)	intron (NM_133919, intron 19 of 19)	61278.0	NM_001359987	246293.0	Mm.179871	NM_178741	ENSMUSG00000029312	Klhl8	2310001P09Rik|D5Ertd431e	kelch-like 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-81761936-3	chr13	81761825	81762025	+	670.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21322.0	NM_007684	12626.0	Mm.12481	NM_007684	ENSMUSG00000021537	Cetn3	MmCEN3	centrin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-67714425-4	chr15	67714332	67714532	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13B|LTR|ERVK	487663.0	NR_045140	69334.0	Mm.63770	NR_045140	ENSMUSG00000102069	1700012I11Rik	-	RIKEN cDNA 1700012I11 gene	ncRNA	3.54590592415098	4.17551289250225	3.60436018204227	3.80599441349997	4.13186695560885	3.34088381186855	4.13332581772383	4.49212593316445	0.410430630827061	0.391409786693934	0.880745427748278
Merged-chr11-50213185-4	chr11	50213083	50213283	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2363.0	NM_011018	18412.0	Mm.40828	NM_011018	ENSMUSG00000015837	Sqstm1	A170|OSF-6|Osi|STAP|STONE14|p62	sequestosome 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-67262207-1	chr5	67262107	67262307	+	781.0	f1_balb.idr	intron (NM_001285452, intron 1 of 6)	B3A|SINE|B2	1642.0	NM_030108	67878.0	Mm.23217	NM_028975	ENSMUSG00000037720	Tmem33	1110006G02Rik|1600019D15Rik|2410089A21Rik|2700052H22Rik|5430406L04Rik|AA388285|AI314185|AI426615|db83	transmembrane protein 33	protein-coding	-0.53957200234276	-0.527827502805041	-0.531677082525443	0.00375101133009315	-0.53883940870504	-0.526959509798966	0.0537841093755231	-0.534127345506642	0.171907830995031	0.951160854050512	1
Merged-chr4-44234088-4	chr4	44233980	44234180	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-12813.0	NR_039565	100628618.0		NR_039565	ENSMUSG00000092677	Mir5106	mir-5106|mmu-mir-5106|mu-mir-5106	microRNA 5106	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-100435396-4	chr9	100435342	100435542	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51031.0	NM_001033543	213208.0	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	3.91146572463854	3.26390183120506	3.61314425190526	1.59155840217249	4.55890669816867	2.05509424259199	3.79024924167176	4.38927475001828	0.916694103391843	0.434241435134253	0.906411599962625
Merged-chr16-91884357-4	chr16	91884267	91884467	+	827.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010587, intron 28 of 38)	intron (NM_010587, intron 28 of 38)	47263.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70226315-2	chr11	70226215	70226415	+	691.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007528, intron 8 of 8)	intron (NM_007528, intron 8 of 8)	3483.0	NM_007528	12029.0	Mm.12930	NM_007528	ENSMUSG00000000317	Bcl6b	Bazf	B cell CLL/lymphoma 6, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-44119699-8	chr1	44119592	44119792	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023645)	promoter-TSS (NM_023645)	164.0	NM_001357048	246229.0	Mm.386883	NM_144558	ENSMUSG00000041684	Bivm	AI854267	basic, immunoglobulin-like variable motif containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-90888810-1	chr5	90888710	90888910	+	541.0	f1_balb.idr	Intergenic	B4A|SINE|B4	-2435.0	NM_008176	14825.0	Mm.21013	NM_008176	ENSMUSG00000029380	Cxcl1	Fsp|Gro1|KC|Mgsa|N51|Scyb1|gro	chemokine (C-X-C motif) ligand 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80667308-2	chr10	80667208	80667408	+	865.833374	f1_balb.idr|f1_c57bl6.idr	exon (NM_021462, exon 14 of 14)	exon (NM_021462, exon 14 of 14)	8985.0	NM_021462	17347.0	Mm.42126	NM_021462	ENSMUSG00000020190	Mknk2	2010016G11Rik|Gprk7|Mnk2	MAP kinase-interacting serine/threonine kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-74284892-4	chr1	74284776	74284976	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001190444)	promoter-TSS (NM_001190444)	-138.0	NM_146110	227290.0	Mm.379371	NM_146110	ENSMUSG00000006299	Aamp	AU040907|Aamp-rs	angio-associated migratory protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126843513-2	chr8	126843413	126843613	+	701.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5507.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-173023569-2	chr2	173023469	173023669	+	743.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019547, intron 3 of 3)	intron (NM_019547, intron 3 of 3)	1667.0	NM_019547	56190.0	Mm.485782	NM_019547	ENSMUSG00000027510	Rbm38	Rnpc1|Seb4|Seb4l	RNA binding motif protein 38	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-52845545-1	chr2	52845445	52845645	+	549.0	f0_balb.idr	Intergenic	Intergenic	-12323.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127618593-7	chr10	127618471	127618671	+	928.535706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 1 of 88)	intron (NM_008512, intron 1 of 88)	2577.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	2.84946095548188	2.94245034773798	2.13897414802131	2.58227766081678	2.80325825622285	1.81808026811676	2.30938674025369	2.59532572091915	-0.464062895871141	0.557451882409709	0.960321604678676
Merged-chr7-144895985-3	chr7	144895870	144896070	+	952.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008003)	promoter-TSS (NM_008003)	-562.0	NM_008003	14170.0	Mm.3904	NM_008003	ENSMUSG00000031073	Fgf15	FGF19	fibroblast growth factor 15	protein-coding	1.84208719721625	1.88567229492035	1.31599359095838	2.10798501582187	2.71933505350777	3.34637667581418	3.10449709258804	2.1196791934751	2.37630625502162	0.00660731121843107	0.0818957993941374
Merged-chr6-87207853-4	chr6	87207774	87207974	+	996.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054041, intron 13 of 17)	intron (NM_054041, intron 13 of 17)	103128.0	NM_001167937	52372.0	Mm.282851	NM_001167937	ENSMUSG00000090891	D6Ertd527e	AU043841	DNA segment, Chr 6, ERATO Doi 527, expressed	protein-coding	6.09732622373584	6.00492553061825	5.79391580552388	6.17900921607516	5.30530861919368	5.61565978691133	5.96560070485455	5.58578480820474	-0.441100078351759	0.0774505950841506	0.423542497638851
Merged-chr8-122609212-2	chr8	122609112	122609312	+	656.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001193645, intron 1 of 11)	intron (NM_001193645, intron 1 of 11)	2275.0	NM_001193645	50917.0	Mm.1786	NM_016722	ENSMUSG00000015027	Galns	mFLJ00319	galactosamine (N-acetyl)-6-sulfate sulfatase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-4710871-2	chr12	4710771	4710971	+	644.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011365, intron 36 of 38)	intron (NM_011365, intron 36 of 38)	27512.0	NM_029107	74855.0	Mm.269534	NM_029107	ENSMUSG00000079177	Fam228a	4930417G10Rik	family with sequence similarity 228, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-88332974-2	chr10	88332874	88333074	+	788.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027878, intron 4 of 6)	MT2B|LTR|ERVL	24101.0	NM_027878	71712.0	Mm.35450	NM_027878	ENSMUSG00000020057	Dram1	1200002N14Rik|Dram	DNA-damage regulated autophagy modulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95672987-2	chr3	95672887	95673087	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14266.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-19873765-4	chr4	19873701	19873901	+	951.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48765.0	NM_175406	242341.0	Mm.19298	NM_175406	ENSMUSG00000028238	Atp6v0d2	1620401A02Rik|AI324824|V-ATPase	ATPase, H+ transporting, lysosomal V0 subunit D2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135611116-4	chr5	135611021	135611221	+	813.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-21533.0	NM_001357037	215160.0	Mm.295438	NM_031398	ENSMUSG00000039917	Rhbdd2	0610011L13Rik|AI480532|Rhbdl7|Usmg1	rhomboid domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5151510-4	chr19	5151494	5151694	+	888.55835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153129, intron 10 of 23)	intron (NM_153129, intron 10 of 23)	-33186.0	NM_008451	16594.0	Mm.271648	NM_008451	ENSMUSG00000024862	Klc2	8030455F02Rik|AW212649|KLC 2|KLC-2	kinesin light chain 2	protein-coding	3.27561771449243	3.24517803742591	2.76220324473575	3.12552280242682	2.91766933364556	1.57676384466096	1.80548886483448	2.89558545074779	-1.22267983819463	0.117392111524052	0.537447425870865
Merged-chr11-9530634-3	chr11	9530521	9530721	+	753.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178259, intron 45 of 61)	CT-rich|Low_complexity|Low_complexity	338679.0	NM_178259	268379.0	Mm.39270	NM_178259	ENSMUSG00000004668	Abca13	9830132L24|A930002G16Rik|AI956815	ATP-binding cassette, sub-family A (ABC1), member 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-75588558-2	chr10	75588458	75588658	+	850.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011820)	promoter-TSS (NM_011820)	-823.0	NM_011820	23887.0	Mm.257927	NM_011820	ENSMUSG00000006344	Ggt5	AI551243|GGL|GGT-REL|Ggtla1	gamma-glutamyltransferase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-60719948-3	chr13	60719842	60720042	+	752.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 8 of 26)	intron (NM_134062, intron 8 of 26)	66422.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3856230-4	chr12	3856124	3856324	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007872, intron 3 of 22)	intron (NM_007872, intron 3 of 22)	6020.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-106805015-2	chr4	106804915	106805115	+	877.9166869999999	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347159)	promoter-TSS (NM_001347159)	-8.0	NM_001347159	329910.0	Mm.222956	NM_025590	ENSMUSG00000034853	Acot11	1110020M10Rik|2010309H15Rik|AW060409|BFIT|BFIT1|Thea|Them1|mKIAA0707	acyl-CoA thioesterase 11	protein-coding	2.31886068208266	2.61976742417874	3.78320307899521	3.44184657274848	2.602996005462	2.93082158789156	3.49360454627358	3.38961824824979	-0.0458414157439331	0.945881883405071	0.998431161219273
Merged-chr3-65665778-4	chr3	65665683	65665883	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166659)	promoter-TSS (NM_001166659)	-445.0	NM_001037923	624866.0	Mm.296317	NM_001037923	ENSMUSG00000074579	Lekr1	EG546798|EG624866|Gm6534	leucine, glutamate and lysine rich 1	protein-coding	2.9474900460023	2.47887304080593	2.26030263702291	3.03685056821771	1.96372450994213	2.73717167418287	2.27775536753258	1.88714818597343	-1.00865765916861	0.208873093741392	0.698371420334047
Merged-chr15-64382674-5	chr15	64382597	64382797	+	773.266663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 1 of 28)	CpG	222.0	NM_001276461	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-29468842-4	chr19	29468755	29468955	+	976.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021396, intron 5 of 5)	intron (NM_021396, intron 5 of 5)	53132.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52629897-2	chr13	52629797	52629997	+	670.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_011518, intron 7 of 13)	intron (NM_011518, intron 7 of 13)	33015.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-41359021-4	chr13	41358921	41359121	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017464)	promoter-TSS (NM_017464)	-20.0	NM_017464	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-41678952-4	chr10	41678849	41679049	+	864.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358562, intron 7 of 47)	intron (NM_001358562, intron 7 of 47)	37514.0	NM_001358562	75973.0	Mm.228517	NM_029493	ENSMUSG00000075225	Ccdc162	5033413D22Rik|Ccdc162p|Gm29096|Gm61|Gm6976	coiled-coil domain containing 162	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-177188938-3	chr1	177188836	177189036	+	888.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011785, intron 1 of 12)	intron (NM_011785, intron 1 of 12)	59831.0	NM_011785	23797.0	Mm.235194	NM_011785	ENSMUSG00000019699	Akt3	AI851531|D930002M15Rik|Nmf350	thymoma viral proto-oncogene 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-155703631-2	chr4	155703531	155703731	+	778.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14|LTR|ERV1	-1184.0	NM_026899	68991.0	Mm.294770	NM_026899	ENSMUSG00000029038	Ssu72	1190002E22Rik|1500011L16Rik|2610101M12Rik	Ssu72 RNA polymerase II CTD phosphatase homolog (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-91807549-6	chr13	91807427	91807627	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145453, intron 1 of 5)	CpG	169.0	NM_145453	69085.0	Mm.52356	NM_145453	ENSMUSG00000021621	Zcchc9	1810019C21Rik	zinc finger, CCHC domain containing 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-74841891-1	chr11	74841791	74841991	+	594.0	f1_balb.idr	intron (NM_010813, intron 4 of 5)	URR1A|DNA|hAT-Charlie	10967.0	NM_010813	17428.0	Mm.3759	NM_010813	ENSMUSG00000000282	Mnt	Rox|bHLHd3	max binding protein	protein-coding	-0.421937516247931	-0.410840787804592	-0.245807187696952	0.0919069445460706	0.0374856210796279	-0.410015587237733	-0.413688159063803	-0.41680912190456	-0.531795311326652	0.836545966315074	1
Merged-chr18-37694418-1	chr18	37694318	37694518	+	571.0	f0_balb.idr	promoter-TSS (NM_033588)	promoter-TSS (NM_033588)	-83.0	NM_033588	93713.0	Mm.247203	NM_033588	ENSMUSG00000103567	Pcdhga5	-	protocadherin gamma subfamily A, 5	protein-coding	0.218600216022164	0.847632150855275	0.0773261258480649	0.0721040381661431	0.0646811389906546	0.29659640065013	0.801997353276859	0.0730181164762107	-0.0118405148972246	0.995365593458464	1
Merged-chr9-98563658-4	chr9	98563564	98563764	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015827)	promoter-TSS (NM_015827)	-53.0	NR_029444	75881.0	Mm.483402	NM_175227	ENSMUSG00000051074	4930579K19Rik	-	RIKEN cDNA 4930579K19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-128010011-2	chr7	128009911	128010111	+	569.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001079932, exon 6 of 6)	exon (NM_001079932, exon 6 of 6)	5633.0	NM_001079932	434246.0	Mm.389924	NM_001079932	ENSMUSG00000042828	Trim72	BC067209|MG53	tripartite motif-containing 72	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-34655666-2	chr7	34655512	34655712	+	574.25	f0_balb.idr|f1_balb.idr	promoter-TSS (NM_001360818)	promoter-TSS (NM_001360818)	-103.0	NM_001360818	233107.0	Mm.76761	NM_146188	ENSMUSG00000030499	Kctd15	BC031749	potassium channel tetramerisation domain containing 15	protein-coding	1.52857445227154	1.08566289095342	1.49460369548647	2.07593936521898	2.28545624404943	1.09069836572434	2.33862813862411	1.61994201320208	0.9497048550299	0.41159677547444	0.894597257730009
Merged-chr3-89091008-4	chr3	89090935	89091135	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028188, intron 2 of 10)	CpG	-1004.0	NM_001083808	72296.0	Mm.27687	NM_028188	ENSMUSG00000041263	Rusc1	2210403N08Rik|AA408288|NESCA	RUN and SH3 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-74026484-4	chr13	74026361	74026561	+	866.19165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_182839, intron 2 of 3)	intron (NM_182839, intron 2 of 3)	17042.0	NM_182839	72948.0	Mm.39752	NM_182839	ENSMUSG00000021573	Tppp	2900041A09Rik|AI849835	tubulin polymerization promoting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-99063474-2	chr11	99063374	99063574	+	806.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	22230.0	NM_010517	16010.0	Mm.233799	NM_010517	ENSMUSG00000017493	Igfbp4	AI875747|Deb2|IBP-4|IGFBP-4	insulin-like growth factor binding protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-125603971-1	chr7	125603871	125604071	+	589.0	f1_c57bl6.idr	intron (NM_021887, intron 1 of 8)	intron (NM_021887, intron 1 of 8)	542.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	-1.50561175621786	-1.47331375025452	-1.02203377115094	-1.49110398925286	-1.50334449591826	-1.47119716082604	-1.48086985756939	-1.48966786617048	-2.07776723614574	0.550394407909386	1
Merged-chr4-35373082-1	chr4	35372982	35373182	+	546.0	f1_c57bl6.idr	Intergenic	Intergenic	-147202.0	NM_001081343	73205.0	Mm.331544	NM_001081343	ENSMUSG00000028300	3110043O21Rik	AI840585|C9orf72	RIKEN cDNA 3110043O21 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-128138562-3	chr7	128138465	128138665	+	804.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021334, intron 14 of 29)	MTEa|LTR|ERVL-MaLR	8997.0	NM_021334	16411.0	Mm.22378	NM_021334	ENSMUSG00000030789	Itgax	AI449405|Cd11c|Cr4|N418	integrin alpha X	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-117196354-2	chr2	117196254	117196454	+	727.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11227.0	NR_030440	732489.0		NR_030440	ENSMUSG00000076376	Mir674	Mirn674|mir-674|mmu-mir-674	microRNA 674	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99531958-7	chr7	99531802	99532002	+	871.609497	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-3584.0	NM_178220	109689.0	Mm.260193	NM_177231	ENSMUSG00000018909	Arrb1	1200006I17Rik|AW208571|G430100A01Rik	arrestin, beta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-9250345-2	chr3	9250245	9250445	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177660)	promoter-TSS (NM_177660)	-222.0	NM_177660	229055.0	Mm.103262	NM_177660	ENSMUSG00000069114	Zbtb10	4832414A18|AU021107|RINZF	zinc finger and BTB domain containing 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-61054649-4	chr9	61054565	61054765	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37596.0	NR_040767	330956.0	Mm.207985	NR_040767	ENSMUSG00000111290	Gm5122	A430102L10	predicted gene 5122	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-40113345-3	chr4	40113279	40113479	+	645.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29886.0	NM_007386	11428.0	Mm.331547	NM_007386	ENSMUSG00000028405	Aco1	Aco-1|Irebp|Irp1	aconitase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-93801990-4	chr1	93801910	93802110	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023136)	promoter-TSS (NM_023136)	-76.0	NM_001105667	21915.0	Mm.250332	NM_023136	ENSMUSG00000026281	Dtymk	AU044245|CDC8|D10Ertd203e|TMPK|TYPK|Tmk|mtmk	deoxythymidylate kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72900510-2	chr6	72900410	72900610	+	991.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019715)	promoter-TSS (NM_019715)	-531.0	NM_019715	74287.0	Mm.29194	NM_019715	ENSMUSG00000055239	Kcmf1	1700094M07Rik|Debt91|Pmcf	potassium channel modulatory factor 1	protein-coding	-0.198067812914753	-0.180558258604741	-0.186261344211473	0.661268974409516	0.503259914084027	-0.179276990785923	-0.185000780524013	-0.189909356540508	-0.418361128404788	0.866757768594873	1
Merged-chr10-80988227-4	chr10	80988114	80988314	+	992.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038655, intron 2 of 3)	intron (NM_001038655, intron 2 of 3)	13151.0	NM_001038655	14708.0	Mm.222496	NM_010319	ENSMUSG00000048240	Gng7	AI840417	guanine nucleotide binding protein (G protein), gamma 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-110986281-4	chr11	110986175	110986375	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010604, intron 1 of 1)	intron (NM_010604, intron 1 of 1)	-11212.0	NM_001252209	16517.0	Mm.30176	NM_010604	ENSMUSG00000051497	Kcnj16	6430410F18Rik|AI132396|Kir5.1	potassium inwardly-rectifying channel, subfamily J, member 16	protein-coding	3.13972942741007	3.53992237504657	3.50862204510511	4.25081476632767	3.84596438135434	4.04144669742672	2.07814854904879	4.31362029015235	0.176236310481338	0.773332081253714	0.998431161219273
Merged-chr11-76900215-4	chr11	76900092	76900292	+	906.133301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4353.0	NM_025655	66601.0	Mm.25138	NM_025655	ENSMUSG00000020839	Tmigd1	2010002A20Rik|Tmigd	transmembrane and immunoglobulin domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-13994609-2	chr14	13994519	13994719	+	749.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	-17872.0	NM_139227	246103.0	Mm.133625	NM_139227	ENSMUSG00000021738	Atxn7	A430107N12Rik|AI627028|Sca7|ataxin-7	ataxin 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-8893638-1	chr10	8893538	8893738	+	719.0	f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-7568.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	-0.253081797137835	-0.692316955770779	-0.695310780698892	-0.69761053621677	-0.562465016465244	-0.346657199333807	-0.694651730746095	-0.697209411339982	-0.0185997401130929	0.994642293108052	1
Merged-chr8-119816592-2	chr8	119816492	119816692	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028071, intron 3 of 3)	intron (NM_028071, intron 3 of 3)	23987.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67996420-2	chr10	67996320	67996520	+	848.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359318, intron 2 of 11)	intron (NM_001359318, intron 2 of 11)	16850.0	NM_001359319	170799.0	Mm.209844	NM_133244	ENSMUSG00000037846	Rtkn2	B130039D23Rik|Mbf|Plekhk1	rhotekin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-63892531-1	chr16	63892431	63892631	+	763.0	f1_c57bl6.idr	Intergenic	L1_Mur2|LINE|L1	-28374.0	NM_010140	13837.0	Mm.1977	NM_010140	ENSMUSG00000052504	Epha3	AW492086|Cek4|EK4|ETK1|End3|Hek|Hek4|Mek4|Tyro4	Eph receptor A3	protein-coding	1.69803118168294	1.06016158060396	1.84743500556708	1.98819916660459	1.00559541050983	1.49811142521358	1.86272829854013	1.8025289980423	-0.346262840579875	0.772667355840673	0.998431161219273
Merged-chr8-36532881-4	chr8	36532736	36532936	+	926.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43645.0	NM_176952	319582.0	Mm.180924	NM_176952	ENSMUSG00000039620	6430573F11Rik	Kiaa1456|TRM9L|Trmt9b	RIKEN cDNA 6430573F11 gene	protein-coding	3.90144069442717	3.98029629192275	2.72509909876411	2.32758784639754	3.42312711420198	2.69078335148249	3.40208057359732	3.2979763629624	-0.301819094985514	0.64549766564275	0.984116759910594
Merged-chr17-79355032-4	chr17	79354946	79355146	+	952.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026514)	promoter-TSS (NM_026514)	45.0	NM_026514	260409.0	Mm.140601	NM_026514	ENSMUSG00000036533	Cdc42ep3	3200001F04Rik|AA986861|Borg2|Cep3|UB1	CDC42 effector protein (Rho GTPase binding) 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126884872-4	chr7	126884762	126884962	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001163775, exon 1 of 16)	5' UTR (NM_001163775, exon 1 of 16)	105.0	NM_001163775	381921.0	Mm.259634	NM_001163774	ENSMUSG00000059981	Taok2	1110033K02Rik|B230344N16|MAP3K17|PSK|PSK1|TAO1|TAO2|mKIAA0881	TAO kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165987141-1	chr2	165987041	165987241	+	1000.0	f0_c57.idr	Intergenic	Intergenic	-5496.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	1.598497608594	2.04415396882612	1.0284414493071	1.40432897387312	1.72191822022585	1.81719519172326	1.03291458624949	2.18458142741125	0.554676438598574	0.641627963459523	0.982599433509505
Merged-chr9-104402430-4	chr9	104402326	104402526	+	954.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23687.0	NR_035516	100316725.0		NR_035516	ENSMUSG00000089406	Mir2136	mmu-mir-2136	microRNA 2136	ncRNA	0.905358887781419	1.17826884858298	1.23084198044262	1.08175741953685	0.502358928952075	0.740977170461782	0.521731586469686	0.513798067459686	-3.71728396140805	0.0263556677854302	1
Merged-chr9-31131475-1	chr9	31131375	31131575	+	611.5	f0_balb.idr	intron (NM_011176, intron 1 of 18)	CpG	324.0	NM_011176	19143.0	Mm.243926	NM_011176	ENSMUSG00000031995	St14	Epithin|MT-SP1|Prss14|Tmprss14|mCAP3|matriptase	suppression of tumorigenicity 14 (colon carcinoma)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-21622272-4	chr10	21622172	21622372	+	996.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_027968, exon 3 of 3)	non-coding (NR_027968, exon 3 of 3)	29127.0	NR_027968	67692.0	Mm.54306	NM_183266	ENSMUSG00000050844	1700020N01Rik	-	RIKEN cDNA 1700020N01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-61752018-2	chr10	61751918	61752118	+	762.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_207000, intron 3 of 8)	intron (NM_207000, intron 3 of 8)	-22719.0	NR_039568	100628583.0		NR_039568	ENSMUSG00000093017	Mir5108	mmu-mir-5108|mu-mir-5108	microRNA 5108	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-99388843-4	chr6	99388758	99388958	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053202, intron 1 of 18)	intron (NM_053202, intron 1 of 18)	46487.0	NM_053202	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-8895570-2	chr5	8895470	8895670	+	843.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008830, intron 2 of 27)	intron (NM_008830, intron 2 of 27)	1849.0	NM_008830	18670.0	Mm.297825	NM_008830	ENSMUSG00000042476	Abcb4	Mdr2|Pgy-2|Pgy2|mdr-2	ATP-binding cassette, sub-family B (MDR/TAP), member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117331750-4	chr11	117331635	117331835	+	714.799988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113488)	promoter-TSS (NM_001113488)	20.0	NM_017380	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-120137188-2	chr2	120137088	120137288	+	963.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133838, intron 1 of 5)	ID_B1|SINE|B4	17387.0	NM_133838	98878.0	Mm.132226	NM_133838	ENSMUSG00000027293	Ehd4	2210022F10Rik|AI197390|AI846352|AV006278|Past2	EH-domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-51333117-2	chr13	51333017	51333217	+	869.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TCTG)n|Simple_repeat|Simple_repeat	-75501.0	NM_010101	13610.0	Mm.136736	NM_010101	ENSMUSG00000067586	S1pr3	AI132464|Edg3|Lpb3|S1p3	sphingosine-1-phosphate receptor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71381514-4	chr8	71381433	71381633	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010150, exon 1 of 4)	5' UTR (NM_010150, exon 1 of 4)	419.0	NM_010150	13864.0	Mm.28989	NM_010150	ENSMUSG00000002393	Nr2f6	AV090102|COUP-TF3|EAR2|Erbal2	nuclear receptor subfamily 2, group F, member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-128712263-2	chr4	128712176	128712376	+	571.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001195130, exon 7 of 15)	exon (NM_001195130, exon 7 of 15)	-15295.0	NM_001195083	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-76010438-2	chr17	76010338	76010538	+	568.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	149415.0	NR_033456	100043885.0	Mm.127562	NR_033456		Gm4710	-	predicted gene 4710	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-30449214-2	chr16	30449113	30449313	+	691.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MurERV4-int|LTR|ERVK	-60683.0	NM_001128096	224088.0	Mm.8924	NM_001128094	ENSMUSG00000022533	Atp13a3	AU022875|Gm1745|Gm541|Gm542	ATPase type 13A3	protein-coding	0.304181645000724	-0.00178069619032467	-0.00545883352665408	0.353134439445015	0.109200235132845	-0.000945245698258462	0.14764344522442	0.358188135199915	-0.135745134496808	0.946826130984546	1
Merged-chr19-42101588-1	chr19	42101488	42101688	+	601.0	f1_c57bl6.idr	intron (NM_145501, intron 2 of 8)	B3A|SINE|B2	11153.0	NM_145501	84095.0	Mm.117037	NM_145501	ENSMUSG00000025178	Pi4k2a	Pi4k2	phosphatidylinositol 4-kinase type 2 alpha	protein-coding	-0.811871916059096	-1.15223696528766	-1.16265319256742	-1.17120939178942	-0.911301499403313	-1.14997972538381	-1.16029518702849	-1.16967783621951	-0.385190450359539	0.909269396991215	1
Merged-chr1-33863401-3	chr1	33863297	33863497	+	790.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177235, intron 5 of 6)	intron (NM_177235, intron 5 of 6)	-24483.0	NM_001161816	433287.0	Mm.383632	NM_001161816		Gm15455	AA692849	predicted gene 15455	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-75609903-7	chr7	75609792	75609992	+	962.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029332, exon 7 of 37)	exon (NM_029332, exon 7 of 37)	154358.0	NM_029332	75547.0	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	1.34530816474003	0.694003315387638	0.683904954938664	1.24178694791325	1.35886295180444	1.22323361439652	0.877872967805811	0.855146779636269	0.28073990687765	0.848444235439352	0.998431161219273
Merged-chr1-74379528-10	chr1	74379548	74379748	+	897.133301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013612, intron 4 of 14)	intron (NM_013612, intron 4 of 14)	4445.0	NM_013612	18173.0	Mm.2913	NM_013612	ENSMUSG00000026177	Slc11a1	Bcg|Ity|Ity1|Lsh|Nramp|Nramp1|ity	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83363983-2	chr6	83363883	83364083	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_183138, exon 11 of 11)	3' UTR (NM_183138, exon 11 of 11)	14499.0	NM_175277	78653.0	Mm.391470	NM_175277	ENSMUSG00000045160	Bola3	1810056O20Rik	bolA-like 3 (E. coli)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-17694957-4	chr16	17694834	17695034	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358404, intron 2 of 16)	intron (NM_001358404, intron 2 of 16)	27966.0	NM_001285886	94112.0	Mm.208970	NM_033609	ENSMUSG00000012114	Med15	A230074L19Rik|AW536074|Pcqap|mPcqap	mediator complex subunit 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-79321096-4	chr12	79320997	79321197	+	994.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 5 of 10)	B4A|SINE|B4	23746.0	NM_001252562	19363.0	Mm.341756	NM_009014	ENSMUSG00000059060	Rad51b	AI553500|R51H2|Rad51l1|mREC2	RAD51 paralog B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-64318613-4	chr1	64318509	64318709	+	844.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-197220.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-106412401-4	chr8	106412287	106412487	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2952.0	NM_011764	22751.0	Mm.295582	NM_011764	ENSMUSG00000031907	Zfp90	6430515L01Rik|KRAB17|NK10|Zfp64|Zfp83|mKIAA1954	zinc finger protein 90	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-136988583-4	chr5	136988501	136988701	+	900.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027318)	promoter-TSS (NM_027318)	-642.0	NM_027318	70103.0	Mm.273147	NM_027318	ENSMUSG00000059518	Znhit1	2700001K05Rik|ZNFN4A1	zinc finger, HIT domain containing 1	protein-coding	2.39885196603816	1.94607489685683	3.52147105114286	2.77509461331713	3.15592523210759	2.72330328352412	3.33911000413017	3.37949555196346	0.655913515968632	0.353413727736701	0.853132398390271
Merged-chr2-68381333-4	chr2	68381234	68381434	+	933.033325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016866, intron 5 of 17)	intron (NM_016866, intron 5 of 17)	90647.0	NM_016866	53416.0	Mm.198414	NM_016866	ENSMUSG00000027030	Stk39	AW227544|AW556857|DCHT|RF005|Rnl5|SPAK	serine/threonine kinase 39	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-15961258-2	chr4	15961158	15961358	+	697.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_013752, intron 1 of 15)	B2_Mm2|SINE|B2	3291.0	NM_013752	27354.0	Mm.20866	NM_013752	ENSMUSG00000028224	Nbn	Nbs1	nibrin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-31636909-2	chr18	31636809	31637009	+	724.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172965, intron 2 of 20)	intron (NM_172965, intron 2 of 20)	1781.0	NM_001357555	269003.0	Mm.194538	NM_172965	ENSMUSG00000024260	Sap130	2610304F09Rik|6720406D06	Sin3A associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-64963909-2	chr18	64963801	64964001	+	670.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114386, intron 1 of 30)	intron (NM_001114386, intron 1 of 30)	-59626.0	NM_031881	83814.0	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	0.457548839876987	0.532197798841896	1.11736062197632	0.975913382982302	0.306326234528129	0.330278674134953	0.672582715651857	0.315885624914282	-2.61880725872477	0.153775386644421	1
Merged-chr6-124782699-4	chr6	124782605	124782805	+	960.033325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER21A|LTR|ERV1	-2978.0	NM_001302555	16977.0	Mm.3207	NM_013588	ENSMUSG00000030125	Lrrc23	4921537K05Rik|B7|Lrpb7	leucine rich repeat containing 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-76773486-2	chr11	76773386	76773586	+	560.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-9908.0	NM_001356321	53334.0	Mm.20931	NM_016810	ENSMUSG00000010392	Gosr1	AI414660|AI426320|BB145494|GOS-28|GOSRI|GS28	golgi SNAP receptor complex member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-114302916-4	chr7	114302809	114303009	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26793.0	NM_011965	26440.0	Mm.121265	NM_011965	ENSMUSG00000030751	Psma1	C2|HC2|Pros-30|alpha-type	proteasome (prosome, macropain) subunit, alpha type 1	protein-coding	1.84267287807918	2.25966745483833	1.31227786087005	2.25209615518002	2.72748339019576	3.1492222562	1.60430971964151	3.369940339848	1.86808936236747	0.0383344129978986	0.278861936428125
Merged-chr7-84188402-4	chr7	84188312	84188512	+	860.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36519.0	NM_133722	70178.0	Mm.23914	NM_133722	ENSMUSG00000038459	Abhd17c	2210412D01Rik|AL023007|Fam108c|Fam108c1	abhydrolase domain containing 17C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-66355141-4	chr7	66355045	66355245	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146191, intron 2 of 33)	intron (NM_146191, intron 2 of 33)	26579.0	NR_106024	102465640.0		NR_106024	ENSMUSG00000098353	Mir7057	Gm27550|mmu-mir-7057	microRNA 7057	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119084803-3	chr11	119084744	119084944	+	927.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007625, intron 2 of 4)	intron (NM_007625, intron 2 of 4)	1393.0	NM_007625	12418.0	Mm.268070	NM_007625	ENSMUSG00000039989	Cbx4	MPc2|PC2	chromobox 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32711384-2	chr2	32711239	32711439	+	666.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_130860, intron 2 of 6)	B1_Mur4|SINE|Alu	1445.0	NM_130860	107951.0	Mm.27557	NM_130860	ENSMUSG00000009555	Cdk9	PITALRE	cyclin-dependent kinase 9 (CDC2-related kinase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-173062171-4	chr2	173062119	173062319	+	960.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40317.0	NM_019547	56190.0	Mm.485782	NM_019547	ENSMUSG00000027510	Rbm38	Rnpc1|Seb4|Seb4l	RNA binding motif protein 38	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-77491280-4	chr11	77491216	77491416	+	979.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1638.0	NM_172945	268445.0	Mm.39296	NM_172945	ENSMUSG00000037907	Ankrd13b	AW124583|B930093C12Rik	ankyrin repeat domain 13b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-70662369-5	chr2	70662303	70662503	+	829.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027352, intron 1 of 9)	intron (NM_027352, intron 1 of 9)	894.0	NM_027352	70231.0	Mm.271950	NM_027352	ENSMUSG00000014959	Gorasp2	0610011A07Rik|2410043M02Rik|5730520M13Rik|9430094F20Rik|AW552058|GOLPH2|GRASP55|GRS2|p59	golgi reassembly stacking protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-183669864-4	chr1	183669776	183669976	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-79101.0	NR_151520	102637191.0	Mm.417076	NR_151520	ENSMUSG00000103305	Gm34068	-	predicted gene, 34068	ncRNA	5.16441030265595	5.20182484695778	5.08410253449901	5.34428315377244	4.17310009189767	4.86486017421571	3.98459469596631	4.67134273801755	-0.897910664749022	0.00925461846865585	0.103036691710184
Merged-chr7-19750310-4	chr7	19750224	19750424	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159724)	promoter-TSS (NM_001159724)	-751.0	NM_001159724	19294.0	Mm.4341	NM_008990	ENSMUSG00000062300	Nectin2	AI325026|AI987993|Cd112|MPH|Pvr|Pvrl2|Pvs|nectin-2	nectin cell adhesion molecule 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-12960634-4	chr17	12960598	12960798	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009338)	promoter-TSS (NM_009338)	27.0	NM_009338	110460.0	Mm.439711	NM_009338	ENSMUSG00000023832	Acat2	AW742799|Tcp-1x|Tcp1-rs1	acetyl-Coenzyme A acetyltransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64155998-2	chr5	64155898	64156098	+	619.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-4262.0	NM_019636	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-87008201-2	chr3	87008101	87008301	+	907.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13D3|LTR|ERVK	-8861.0	NM_007639	12479.0	Mm.1894	NM_007639	ENSMUSG00000028076	Cd1d1	AI747460|CD1.1|Cd1a|Cd1d|Ly-38	CD1d1 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59831224-4	chr15	59831118	59831318	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-36259.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-115816760-4	chr10	115816664	115816864	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146010)	promoter-TSS (NM_146010)	-520.0	NM_001168680	216350.0	Mm.22270	NM_146010	ENSMUSG00000034127	Tspan8	C76990|E330007O21Rik|Tm4sf3	tetraspanin 8	protein-coding	6.19661980932989	6.90789404158683	6.18040426084217	6.64726984521748	5.26052276491867	5.91196237901883	4.94168598170652	5.76520214651633	-1.09389802781488	6.05091231109803e-05	0.00205856840950532
Merged-chr11-72428801-3	chr11	72428702	72428902	+	788.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6724.0	NM_027819	71522.0	Mm.23336	NM_027819	ENSMUSG00000040471	Ggt6	9030405D14Rik|AI427679|AW490214	gamma-glutamyltransferase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-69454661-4	chr12	69454569	69454769	+	882.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20881.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	2.87640610477906	2.89617274698146	1.91079470054055	2.58128952636117	3.63057760932479	3.67538809227743	3.74889519504049	3.05210694976234	1.58200793126489	0.0136651363807061	0.13594884435797
Merged-chr11-80142145-4	chr11	80142018	80142218	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183275)	promoter-TSS (NM_183275)	35.0	NM_183275	68550.0	Mm.18466	NM_183275	ENSMUSG00000046909	Tefm	1110002N22Rik	transcription elongation factor, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-79586984-4	chr3	79586871	79587071	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4366.0	NM_001356326	67738.0	Mm.295252	NM_026352	ENSMUSG00000027804	Ppid	4930564J03Rik|CYP-40|Ppidl|Ppif	peptidylprolyl isomerase D (cyclophilin D)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-88199254-6	chr8	88199150	88199350	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164497)	promoter-TSS (NM_001164497)	37.0	NM_001164498	214627.0	Mm.491211	NM_001164497	ENSMUSG00000036779	Papd5	5730445M16Rik|5830428A09	PAP associated domain containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-154293997-2	chr4	154293897	154294097	+	545.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001112744, intron 1 of 14)	intron (NM_001112744, intron 1 of 14)	5898.0	NM_001112744	230972.0	Mm.38481	NM_001112744	ENSMUSG00000029032	Arhgef16	-	Rho guanine nucleotide exchange factor (GEF) 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128086580-2	chr10	128086480	128086680	+	735.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_016774, intron 7 of 9)	B3A|SINE|B2	1294.0	NR_030442	751518.0		NR_030442	ENSMUSG00000104755	Mir677	Mirn677|mir-677|mmu-mir-677	microRNA 677	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-144582489-4	chr7	144582375	144582575	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010175)	promoter-TSS (NM_010175)	-39.0	NM_010175	14082.0	Mm.5126	NM_010175	ENSMUSG00000031077	Fadd	Mort1/FADD	Fas (TNFRSF6)-associated via death domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-44173085-4	chr16	44172994	44173194	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001029889)	promoter-TSS (NM_001029889)	-303.0	NM_001029889	207806.0	Mm.310566	NM_001029889	ENSMUSG00000068284	Usf3	5530400K22Rik|Gm1779|Gm608|mKIAA2018	upstream transcription factor family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-117021160-2	chr13	117021060	117021260	+	681.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081009, intron 3 of 26)	intron (NM_001081009, intron 3 of 26)	4356.0	NM_001081009	52552.0	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28690307-2	chr17	28690207	28690407	+	810.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290320)	promoter-TSS (NM_001290320)	-320.0	NM_001290320	224661.0		NM_146076	ENSMUSG00000036196	Slc26a8	-	solute carrier family 26, member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-22312916-2	chr9	22312816	22313016	+	582.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR9A|LTR|ERVK	-5278.0	NM_145612	235050.0	Mm.306038	NM_145612	ENSMUSG00000066829	Zfp810	BC005471	zinc finger protein 810	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-110893724-4	chr9	110893697	110893897	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153354, intron 17 of 25)	intron (NR_153354, intron 17 of 25)	13475.0	NM_001146060	235633.0	Mm.86338	NM_146228	ENSMUSG00000044037	Als2cl	79H19D|79H19E|BC022645|D930044G19Rik|mRn.49018	ALS2 C-terminal like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-62521890-2	chr4	62521790	62521990	+	670.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1827.0	NM_008525	17025.0	Mm.6988	NM_008525	ENSMUSG00000028393	Alad	ALADH|Lv	aminolevulinate, delta-, dehydratase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-61799464-4	chr14	61799376	61799576	+	941.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-117103.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	2.84459135789783	2.62831626384429	2.28478353716307	2.47031177830967	2.64486830405534	1.53594158895948	2.94738325358652	2.58946231810609	-0.0816424328619954	0.920502554054497	0.998431161219273
Merged-chr5-8660245-8	chr5	8660129	8660329	+	797.842285	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011076, intron 3 of 29)	intron (NM_011076, intron 3 of 29)	-37277.0	NM_198620	242819.0	Mm.332192	NM_198620	ENSMUSG00000040570	Rundc3b	Gm440	RUN domain containing 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-115984276-4	chr4	115984166	115984366	+	777.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33658.0	NM_010173	14073.0	Mm.256025	NM_010173	ENSMUSG00000034171	Faah	AW412498	fatty acid amide hydrolase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4125850-4	chr19	4125741	4125941	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025889)	promoter-TSS (NM_025889)	17.0	NM_016666	11632.0	Mm.10433	NM_016666	ENSMUSG00000024847	Aip	AA408703|AW476050|Ara9|D19Bwg1412e|Fkbp16|Xap2	aryl-hydrocarbon receptor-interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-34658300-2	chr5	34658200	34658400	+	858.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029278, intron 1 of 17)	intron (NM_029278, intron 1 of 17)	1848.0	NM_029278	75416.0	Mm.40292	NM_029278	ENSMUSG00000036693	Nop14	2610033H07Rik|Nol14	NOP14 nucleolar protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-150593233-3	chr5	150593122	150593322	+	898.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133898, intron 1 of 4)	intron (NM_133898, intron 1 of 4)	1303.0	NM_133898	100637.0	Mm.279932	NM_133898	ENSMUSG00000041132	N4bp2l1	2410024N18Rik|AI428195|B230342M21Rik	NEDD4 binding protein 2-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-26373828-2	chr10	26373728	26373928	+	904.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001347467, exon 1 of 21)	5' UTR (NM_001347467, exon 1 of 21)	244.0	NM_001359255	237339.0	Mm.338439	NM_172787	ENSMUSG00000039089	L3mbtl3	AI481284|MBT-1	L3MBTL3 histone methyl-lysine binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-143155374-3	chr4	143155309	143155509	+	857.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001256380, intron 6 of 7)	intron (NM_001256380, intron 6 of 7)	-19247.0	NR_105988	102465618.0		NR_105988	ENSMUSG00000106597	Mir7021	mmu-mir-7021	microRNA 7021	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-104366039-2	chr8	104365939	104366139	+	690.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153582, intron 1 of 3)	MTE2b|LTR|ERVL-MaLR	25445.0	NM_024217	68119.0	Mm.390108	NM_024217	ENSMUSG00000031875	Cmtm3	9430096L06Rik|AI413895|BNAS2|Cklfsf3	CKLF-like MARVEL transmembrane domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-10089777-3	chr1	10089664	10089864	+	648.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026493, intron 14 of 29)	B4|SINE|B4	51546.0	NM_026493	211660.0	Mm.244046	NM_026493	ENSMUSG00000056763	Cspp1	2310020J12Rik|4930413O22Rik|AA387550|BC055915|Cspp2|Cspp3	centrosome and spindle pole associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-3209455-1	chr8	3209355	3209555	+	1000.0	f0_balb.idr	intron (NM_001330056, intron 3 of 21)	intron (NM_001330056, intron 3 of 21)	70162.0	NM_010568	16337.0	Mm.268003	NM_010568	ENSMUSG00000005534	Insr	4932439J01Rik|CD220|D630014A15Rik|IR|IR-A|IR-B	insulin receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-170101331-4	chr2	170101213	170101413	+	911.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29907.0	NM_001033299	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	2.44414151272219	1.19268786692698	2.58478071353888	1.89681867394978	1.93257328206957	1.47367507936456	1.16980631206391	2.66760178409637	-0.437643980402158	0.692203062957591	0.997361254512567
Merged-chr1-152800122-4	chr1	152800068	152800268	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010877)	promoter-TSS (NM_010877)	15.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67251955-2	chr10	67251855	67252055	+	621.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_207221, intron 24 of 25)	intron (NM_207221, intron 24 of 25)	33326.0	NM_001036293	641340.0	Mm.136223	NM_001036293	ENSMUSG00000075000	Nrbf2	NRBF-2	nuclear receptor binding factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-151344952-4	chr5	151344872	151345072	+	832.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23703.0	NR_045700	625175.0	Mm.443286	NR_045699	ENSMUSG00000097321	1700028E10Rik	A630054D14|Gm6561	RIKEN cDNA 1700028E10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55744162-3	chr19	55744061	55744261	+	891.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_138565, intron 3 of 15)	intron (NR_138565, intron 3 of 15)	2351.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-16866011-4	chr12	16865877	16866077	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29001.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-64310063-4	chr14	64309946	64310146	+	955.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253714, intron 1 of 4)	intron (NM_001253714, intron 1 of 4)	106910.0	NM_001253716	110265.0	Mm.26713	NM_026322	ENSMUSG00000054733	Msra	2310045J23Rik|6530413P12Rik|MSR-A	methionine sulfoxide reductase A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-58529967-4	chr10	58529839	58530039	+	918.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162956, intron 10 of 15)	ORR1F|LTR|ERVL-MaLR	32002.0	NM_001162956	76138.0	Mm.211744	NM_001162956	ENSMUSG00000038010	Ccdc138	6230424H07Rik|BC042726	coiled-coil domain containing 138	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-144932571-4	chr7	144932485	144932685	+	993.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007631, exon 5 of 5)	3' UTR (NM_007631, exon 5 of 5)	7340.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122269536-4	chr8	122269429	122269629	+	884.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12612.0	NM_009569	22761.0	Mm.3105	NM_009569	ENSMUSG00000049577	Zfpm1	FOG|Fog1	zinc finger protein, multitype 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4887470-2	chr16	4887370	4887570	+	822.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357062, intron 1 of 17)	PB1D10|SINE|Alu	1370.0	NM_001357061	17237.0	Mm.291326	NM_029657	ENSMUSG00000022517	Mgrn1	2610042J20Rik|mKIAA0544|md|nc	mahogunin, ring finger 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-96510769-4	chr13	96510694	96510894	+	945.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_144624, intron 2 of 10)	intron (NR_144624, intron 2 of 10)	8393.0	NR_144623	27015.0	Mm.89926	NM_012048	ENSMUSG00000021668	Polk	DINP|Dinb1	polymerase (DNA directed), kappa	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-45660289-2	chr14	45660202	45660402	+	724.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-2159.0	NM_001042719	114874.0	Mm.121918	NM_176845	ENSMUSG00000037697	Ddhd1	Mir5131|PA-PLA1	DDHD domain containing 1	protein-coding	1.18633713554709	0.901734468672964	1.68892467364746	1.99028211052119	1.03918396669407	1.77082766977101	0.889142843516325	1.53055030610737	-0.53862739085684	0.680161009357429	0.995506882643648
Merged-chr11-88044471-3	chr11	88044383	88044583	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2890.0	NM_001078167	110809.0	Mm.391719	NM_173374	ENSMUSG00000018379	Srsf1	1110054N12Rik|5730507C05Rik|6330415C05Rik|AI482334|AW491331|Asf|Sf2|Sfrs1	serine/arginine-rich splicing factor 1	protein-coding	4.24265997200884	5.14988062884442	2.73161505218097	3.18517126979942	4.09555089806618	5.01777053737669	3.19700424237236	3.67449459904356	0.0172549979335088	0.977619522862432	0.998431161219273
Merged-chr11-115657110-4	chr11	115656995	115657195	+	927.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001313936, intron 2 of 5)	intron (NM_001313936, intron 2 of 5)	-28800.0	NM_001252395	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-80149438-2	chr11	80149338	80149538	+	799.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4724.0	NM_172133	216991.0	Mm.341520	NM_172133	ENSMUSG00000020709	Adap2	Centa2	ArfGAP with dual PH domains 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-78916027-2	chr12	78915936	78916136	+	856.400024	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-9098.0	NM_013738	27260.0	Mm.103380	NM_013738	ENSMUSG00000021118	Plek2	-	pleckstrin 2	protein-coding	0.941780663485458	0.791362352379296	1.02786913271188	1.51057292252619	1.13544777688673	1.91288166115396	2.55171343119578	0.754427896094129	2.12629877442898	0.105271306031691	0.505892575341078
Merged-chr19-29464193-3	chr19	29464085	29464285	+	859.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021396, intron 5 of 5)	B2_Mm2|SINE|B2	53266.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-14533837-4	chr3	14533735	14533935	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028915)	promoter-TSS (NM_028915)	47.0	NM_001163580	71710.0	Mm.257449	NM_028915	ENSMUSG00000027550	Lrrcc1	1200008A14Rik|4932441F23Rik|AI195358|AI447421	leucine rich repeat and coiled-coil domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-60371745-4	chr10	60371632	60371832	+	927.341675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001159572, exon 7 of 7)	3' UTR (NM_001159572, exon 7 of 7)	24881.0	NM_028732	74048.0	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-88227292-4	chr1	88227142	88227342	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001281466, intron 1 of 41)	intron (NM_001281466, intron 1 of 41)	222.0	NM_001281466	100040766.0	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	Heatr7b1	maestro heat-like repeat family member 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35443802-2	chr17	35443702	35443902	+	571.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001201460)	TTS (NM_001201460)	4635.0	NM_001201460	110558.0	Mm.431282	NM_001201460		H2-Q9	H-2Q9|Ped|Qa-2|Qa-9|Qa9	histocompatibility 2, Q region locus 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-109421962-2	chr4	109421862	109422062	+	671.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145948, intron 3 of 17)	intron (NM_001145948, intron 3 of 17)	6315.0	NM_001145948	230603.0	Mm.33091	NM_153392	ENSMUSG00000028555	Ttc39a	4922503N01Rik	tetratricopeptide repeat domain 39A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-16398-1	chr4	16298	16498	+	1000.0	f1_c57bl6.idr	Intergenic	Intergenic	-3155685.0	NM_001167534	100312470.0	Mm.480297	NM_001167534	ENSMUSG00000115072	Vmn1r2	Gm11776	vomeronasal 1 receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-11603417-1	chr19	11603317	11603517	+	1000.0	f1_balb.idr	intron (NM_026835, intron 1 of 6)	intron (NM_026835, intron 1 of 6)	1387.0	NM_026835	68774.0	Mm.290390	NM_026835	ENSMUSG00000024679	Ms4a6d	1110058E16Rik|AI447446|Ms4a11	membrane-spanning 4-domains, subfamily A, member 6D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-148487815-2	chr2	148487715	148487915	+	684.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44280.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-164135500-4	chr1	164135399	164135599	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011347, intron 8 of 15)	intron (NM_011347, intron 8 of 15)	-16336.0	NM_007976	14067.0	Mm.12900	NM_007976	ENSMUSG00000026579	F5	AI173222|Cf-5|Cf5	coagulation factor V	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-176848976-5	chr1	176848885	176849085	+	892.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357390, intron 8 of 18)	intron (NM_001357390, intron 8 of 18)	-12852.0	NR_037996	15365.0	Mm.441435	NR_037996		Hmga2-ps1	EG666235|Gm7996|Hmgic-ps1|[y]i-c	high mobility group AT-hook 2, pseudogene 1	pseudo	1.2980031386927	1.51439598922945	0.580679486365283	0.571610865817185	0.558597602121651	0.594861516125851	1.24478891595045	1.1946618464067	-0.531487501567653	0.750500420135067	0.998431161219273
Merged-chr5-12206647-3	chr5	12206547	12206747	+	856.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-176519.0	NM_028882	108151.0	Mm.89313	NM_028882	ENSMUSG00000040254	Sema3d	4631426B19Rik	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-16191351-3	chr1	16191246	16191446	+	686.022217	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	85464.0	NM_133832	98711.0	Mm.274376	NM_133832	ENSMUSG00000025921	Rdh10	3110069K09Rik|4921506A21Rik|AI875664|AW549993|D1Ertd762e|m366Asp	retinol dehydrogenase 10 (all-trans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-24547036-4	chr7	24546939	24547139	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_009532, exon 2 of 18)	5' UTR (NM_009532, exon 2 of 18)	340.0	NM_001360170	22594.0	Mm.4347	NM_009532	ENSMUSG00000051768	Xrcc1	Xrcc-1	X-ray repair complementing defective repair in Chinese hamster cells 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-136728406-4	chr6	136728309	136728509	+	893.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127318, intron 13 of 26)	intron (NM_001127318, intron 13 of 26)	53333.0	NM_145067	14917.0	Mm.222729	NM_145067	ENSMUSG00000042638	Gucy2c	AI893437|GC-C|Gcc	guanylate cyclase 2c	protein-coding	4.40009147968222	3.93756450936488	3.88280699416179	5.20992559272994	5.21445130377544	5.00109446863155	3.43687438060464	4.30938092855741	0.22245446805657	0.64601167464167	0.984116759910594
Merged-chr1-13372758-5	chr1	13372656	13372856	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302702)	promoter-TSS (NM_001302702)	-327.0	NM_001302702	17978.0	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-115661251-4	chr3	115661150	115661350	+	948.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53805.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-36621247-3	chr16	36621126	36621326	+	990.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019388, intron 2 of 7)	intron (NM_019388, intron 2 of 7)	44851.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75576577-2	chr11	75576477	75576677	+	786.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_173388, exon 14 of 14)	3' UTR (NM_173388, exon 14 of 14)	-11502.0	NM_008850	18738.0	Mm.3128	NM_008850	ENSMUSG00000017781	Pitpna	Pitpn|vb|vibrator	phosphatidylinositol transfer protein, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133361470-2	chr4	133361370	133361570	+	604.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8265.0	NM_016981	20544.0	Mm.4312	NM_016981	ENSMUSG00000028854	Slc9a1	AW554487|Apnh|Mir5122|Nhe1|mir-5122|swe	solute carrier family 9 (sodium/hydrogen exchanger), member 1	protein-coding	-1.84446540621454	-1.66703209084435	-1.82297003008319	-1.83062437091832	-1.84230234211872	-1.6650127732569	-1.82086056797065	-1.82925424756847	0.037684011990387	0.991491645451152	1
Merged-chr14-14066220-2	chr14	14066120	14066320	+	877.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_139227, intron 4 of 11)	L1_Mur3|LINE|L1	53729.0	NM_139227	246103.0	Mm.133625	NM_139227	ENSMUSG00000021738	Atxn7	A430107N12Rik|AI627028|Sca7|ataxin-7	ataxin 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-14824002-2	chr8	14823902	14824102	+	816.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_172910, intron 11 of 15)	intron (NM_172910, intron 11 of 15)	-64534.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97666183-2	chr11	97666083	97666283	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_139311, intron 4 of 19)	intron (NM_139311, intron 4 of 19)	2771.0	NM_139311	246198.0	Mm.23685	NM_139311	ENSMUSG00000038437	Mllt6	AI315037|Af17	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-79721535-4	chr7	79721432	79721632	+	998.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001113471, exon 9 of 9)	exon (NM_001113471, exon 9 of 9)	-7346.0	NM_001291222	16576.0	Mm.101633	NM_010626	ENSMUSG00000050382	Kif7	-	kinesin family member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124884991-2	chr6	124884891	124885091	+	794.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013488, intron 1 of 9)	intron (NM_013488, intron 1 of 9)	3209.0	NM_013488	12504.0	Mm.2209	NM_013488	ENSMUSG00000023274	Cd4	L3T4|Ly-4	CD4 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-5124873-4	chr18	5124764	5124964	+	762.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40867.0	NR_153824	102637682.0	Mm.451914	NR_153824		Gm26682	Gm38715	predicted gene, 26682	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-58848654-2	chr15	58848554	58848754	+	566.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-23995.0	NM_026642	68260.0	Mm.278805	NM_026642	ENSMUSG00000037085	Trmt12	4632406N01Rik|AI449275|Tyw2	tRNA methyltranferase 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-78954985-2	chr11	78954885	78955085	+	792.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001313922, intron 22 of 25)	intron (NM_001313922, intron 22 of 25)	29694.0	NM_001313922	18126.0	Mm.2893	NM_010927	ENSMUSG00000020826	Nos2	MAC-NOS|NOS-II|Nos-2|Nos2a|i-NOS|iNOS	nitric oxide synthase 2, inducible	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-3233744-3	chr16	3233698	3233898	+	809.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CTGTG)n|Simple_repeat|Simple_repeat	-358600.0	NM_146860	258859.0	Mm.377723	NM_146860	ENSMUSG00000051003	Olfr161	MOR131-1|OR912-47M6	olfactory receptor 161	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-104375293-1	chr7	104375193	104375393	+	760.0	f1_balb.idr	Intergenic	Lx2B|LINE|L1	-16647.0	NM_175648	244183.0	Mm.347647	NM_175648	ENSMUSG00000052749	Trim30b	A530023O14Rik|Trim30-1	tripartite motif-containing 30B	protein-coding	1.86439354149818	0.652300943577574	0.63705205747471	0.625010387527718	1.60895969998554	0.655685524932754	0.873568113091848	1.6283519226768	0.573857620600816	0.720896833204175	0.998431161219273
Merged-chr8-84831673-4	chr8	84831572	84831772	+	991.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183358)	promoter-TSS (NM_183358)	593.0	NR_033145	23863.0	Mm.304252	NM_201227	ENSMUSG00000053226	Dand5	Cerl-2|Cerl2|Cerr2|Dte|GREM3|coco	DAN domain family member 5, BMP antagonist	protein-coding	3.04170542216913	2.40406791822293	1.97068210779669	2.39197268365922	2.93382321578228	3.551653222115	1.76356727250851	2.64183701894599	0.681725263388182	0.400162311323819	0.885176145862419
Merged-chr11-61956802-4	chr11	61956708	61956908	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001281818)	promoter-TSS (NM_001281818)	45.0	NM_001310526	432572.0	Mm.438022	NM_001029936	ENSMUSG00000042331	Specc1	2810012G08Rik|B230396K10Rik|Cytsb	sperm antigen with calponin homology and coiled-coil domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-25736335-2	chr14	25736235	25736435	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001101433, intron 2 of 3)	(TG)n|Simple_repeat|Simple_repeat	32521.0	NM_001101433	71918.0	Mm.41904	NM_001101433	ENSMUSG00000055538	Zcchc24	2310047A01Rik	zinc finger, CCHC domain containing 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-163743459-4	chr2	163743371	163743571	+	972.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001272052, intron 1 of 11)	intron (NM_001272052, intron 1 of 11)	6768.0	NM_007398	11486.0	Mm.388	NM_007398	ENSMUSG00000017697	Ada	-	adenosine deaminase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6343194-2	chr19	6343094	6343294	+	717.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_117093, intron 7 of 30)	intron (NR_117093, intron 7 of 30)	2034.0	NR_117093	26412.0	Mm.25860	NM_009006	ENSMUSG00000024948	Map4k2	AI385662|BL44|GCK|Rab8ip	mitogen-activated protein kinase kinase kinase kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-29324226-2	chr7	29324126	29324326	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081028, exon 22 of 23)	exon (NM_001081028, exon 22 of 23)	20221.0	NM_013874	29861.0	Mm.101885	NM_013874	ENSMUSG00000030584	Dpf1	Neud4	D4, zinc and double PHD fingers family 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-118517987-2	chr7	118517887	118518087	+	565.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001304758, intron 5 of 6)	intron (NM_001304758, intron 5 of 6)	15369.0	NM_001304758	12850.0	Mm.20634	NM_009940	ENSMUSG00000030652	Coq7	clk-1	demethyl-Q 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-69114805-2	chr3	69114705	69114905	+	716.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008467, intron 1 of 16)	intron (NM_008467, intron 1 of 16)	12287.0	NM_008467	16649.0	Mm.30601	NM_008467	ENSMUSG00000027782	Kpna4	1110058D08Rik|IPOA3	karyopherin (importin) alpha 4	protein-coding	0.790510369719999	0.663873142800328	0.653283499286061	1.50685664206834	1.16154268443488	1.20589746511031	0.853108254875096	1.23283851145241	0.657745234055538	0.656299741977009	0.988505467120973
Merged-chr10-17948139-4	chr10	17948032	17948232	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033432)	promoter-TSS (NM_001033432)	-65.0	NM_001033432	380629.0	Mm.276430	NM_001033432	ENSMUSG00000039879	Heca	Gm869|HDC|HDCL	hdc homolog, cell cycle regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126688179-4	chr8	126688100	126688300	+	976.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-94764.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-57558743-3	chr9	57558606	57558806	+	635.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2238.0	NM_022813	24044.0	Mm.286069	NM_022813	ENSMUSG00000040188	Scamp2	AI875466|Sc2	secretory carrier membrane protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-108316275-4	chr13	108316226	108316426	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178683)	promoter-TSS (NM_178683)	-11.0	NM_178683	218581.0	Mm.32318	NM_178683	ENSMUSG00000021697	Depdc1b	9830132O03|AW260467|XTP1	DEP domain containing 1B	protein-coding	5.91558740757727	6.1535454697929	5.23148721010873	6.27489577950095	6.4461298085019	5.93851759013675	5.74934604200296	6.18864364319215	0.180537823794087	0.503609799906093	0.939787919021146
Merged-chr15-27856398-7	chr15	27856312	27856512	+	943.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081302, intron 11 of 56)	intron (NM_001081302, intron 11 of 56)	169436.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-121908160-2	chr1	121908060	121908260	+	747.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-296985.0	NR_151524	102638832.0	Mm.112794	NR_151524	ENSMUSG00000099960	Gm28590	-	predicted gene 28590	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-165616844-4	chr1	165616745	165616945	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083897, intron 1 of 5)	intron (NM_001083897, intron 1 of 5)	17696.0	NM_001001880	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-112240464-4	chr2	112240391	112240591	+	856.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207206, intron 1 of 13)	intron (NM_207206, intron 1 of 13)	650.0	NM_207206	99010.0	Mm.33438	NM_207206	ENSMUSG00000027134	Lpcat4	AI505034|Agpat7|Aytl3|LPEAT2	lysophosphatidylcholine acyltransferase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44479821-4	chr9	44479726	44479926	+	862.033325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2999.0	NM_001357490	80288.0	Mm.370270	NM_030256	ENSMUSG00000063382	Bcl9l	B9L|BC003321|BCL9-2|DLNB11	B cell CLL/lymphoma 9-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-52618689-2	chr3	52618589	52618789	+	772.583374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	101725.0	NR_153344	102631981.0	Mm.394225	NR_153344		Gm30173	-	predicted gene, 30173	ncRNA	3.33278232061114	3.21440534510613	1.63363891975059	1.34281599349739	1.68209459876971	2.75723300943541	1.09777688573377	1.05974075618302	-1.63776953976912	0.133534853664406	0.571109021244848
Merged-chr2-68784899-4	chr2	68784785	68784985	+	999.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-76556.0	NM_172856	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166468121-2	chr2	166468021	166468221	+	865.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2B1|LTR|ERVL	20670.0	NR_015558	319684.0	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-33168661-4	chr12	33168551	33168751	+	781.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028139, intron 2 of 3)	L1MB7|LINE|L1	20965.0	NM_028139	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-75085053-4	chr8	75084964	75085164	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8554.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-35111760-2	chr9	35111660	35111860	+	558.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009178, intron 1 of 10)	intron (NM_009178, intron 1 of 10)	-4968.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-52223120-3	chr11	52223010	52223210	+	887.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-8885.0	NM_011543	21402.0	Mm.42944	NM_011543	ENSMUSG00000036309	Skp1a	15kDa|2610043E24Rik|2610206H23Rik|EMC19|OCP-II|OCP2|SKP1|Tceb1l|p19A|p19Skp1	S-phase kinase-associated protein 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-121024086-4	chr4	121023985	121024185	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6838.0	NM_133716	69780.0	Mm.271819	NM_133716	ENSMUSG00000032870	Smap2	1810031K02Rik|AA408614|Smap1l	small ArfGAP 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-67032762-2	chr14	67032662	67032862	+	606.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360034, intron 2 of 8)	RSINE1|SINE|B4	-23885.0	NM_009761	12177.0	Mm.29820	NM_009761	ENSMUSG00000022051	Bnip3l	C86132|D14Ertd719e|Nip3L|Nix	BCL2/adenovirus E1B interacting protein 3-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-30712676-4	chr10	30712580	30712780	+	952.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358842, intron 3 of 14)	intron (NM_001358842, intron 3 of 14)	-56813.0	NM_001111267	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80934708-2	chr10	80934608	80934808	+	840.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	4617.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-123638957-2	chr9	123638857	123639057	+	734.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_139142, intron 9 of 10)	intron (NM_139142, intron 9 of 10)	-6392.0	NM_011731	22599.0	Mm.41963	NM_011731	ENSMUSG00000025243	Slc6a20b	AA986306|Sit1|Slc6a20|XT3|Xtrp3	solute carrier family 6 (neurotransmitter transporter), member 20B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-60961232-4	chr1	60961129	60961329	+	977.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16685.0	NM_017480	54167.0	Mm.42044	NM_017480	ENSMUSG00000026009	Icos	AILIM|CCLP|CRP-1|H4|Ly115	inducible T cell co-stimulator	protein-coding	3.05415815738403	1.90141961260229	1.31750513738469	3.09571277947502	3.07978140214492	1.91646995359889	1.32751382559352	3.1118686122802	0.0355049045013326	0.971752547633893	0.998431161219273
Merged-chr1-85280543-2	chr1	85280447	85280647	+	815.5	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-9981.0	NM_001037909	620078.0	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik	RIKEN cDNA C130026I21 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-25758825-2	chr15	25758725	25758925	+	623.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001353142, intron 1 of 20)	intron (NM_001353142, intron 1 of 20)	5619.0	NM_001353142	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-64059549-3	chr9	64059454	64059654	+	793.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9725.0	NR_040713	68697.0	Mm.491042	NR_040713	ENSMUSG00000097036	1110036E04Rik	-	RIKEN cDNA 1110036E04 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-90218881-2	chr9	90218781	90218981	+	610.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_194334, exon 9 of 13)	exon (NM_194334, exon 9 of 13)	51888.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-83734547-2	chr8	83734447	83734647	+	889.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011925, intron 1 of 19)	PB1D10|SINE|Alu	6764.0	NM_001163029	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	-0.510575579873819	-0.488920566475796	0.859933377212949	-0.501321843695258	-0.312753760370517	-0.487373895791247	-0.494322235869375	-0.500362478434923	-3.23485316161013	0.19231820809435	1
Merged-chr1-156575835-2	chr1	156575735	156575935	+	946.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001136104, intron 1 of 12)	intron (NM_001136104, intron 1 of 12)	17048.0	NM_001136104	11352.0	Mm.329515	NM_009595	ENSMUSG00000026596	Abl2	AA536808|Abll|Arg	v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-37696446-1	chr15	37696346	37696546	+	698.0	f0_c57.idr	intron (NM_001359841, intron 1 of 7)	intron (NM_001359841, intron 1 of 7)	-15872.0	NM_001359839	52589.0	Mm.283370	NM_134094	ENSMUSG00000051359	Ncald	AI848120|D030020D09Rik|D15Ertd412e	neurocalcin delta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-128851310-3	chr6	128851208	128851408	+	803.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001254946, intron 2 of 2)	RMER12B|LTR|ERVK	-24993.0	NM_030599	80782.0	Mm.6180	NM_030599	ENSMUSG00000079298	Klrb1b	Klrb1d|Ly55b|Ly55d|NKR-P1B|NKR-P1D|Nkrp1-b|Nkrp1b|Nkrp1d|ly-55b|ly-55d	killer cell lectin-like receptor subfamily B member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-33101829-3	chr14	33101724	33101924	+	729.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146022, intron 20 of 58)	intron (NM_001146022, intron 20 of 58)	83242.0	NM_001146022	545030.0	Mm.318345	NM_001146022	ENSMUSG00000051506	Wdfy4	Gm18810	WD repeat and FYVE domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-52963602-2	chr2	52963533	52963733	+	768.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	105765.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-5507794-4	chr2	5507672	5507872	+	802.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290375, intron 2 of 10)	intron (NM_001290375, intron 2 of 10)	128382.0	NR_030601	100124465.0		NR_030601	ENSMUSG00000078031	Mir466d	Mirn466d	microRNA 466d	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-65845568-3	chr17	65845467	65845667	+	635.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	39356.0	NM_001198949	19765.0	Mm.17009	NM_009067	ENSMUSG00000024096	Ralbp1	RLIP76|Rip1	ralA binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-28164113-2	chr5	28164013	28164213	+	720.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1583.0	NM_010134	13799.0	Mm.4298	NM_010134	ENSMUSG00000039095	En2	BB131122|En-2	engrailed 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-107233660-4	chr3	107233582	107233782	+	886.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001256174, exon 3 of 3)	exon (NM_001256174, exon 3 of 3)	3068.0	NM_001256174	319929.0	Mm.30453	NM_001256174	ENSMUSG00000094613	A630076J17Rik	-	RIKEN cDNA A630076J17 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-5340783-2	chr18	5340683	5340883	+	662.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	-5976.0	NM_001360447	240186.0	Mm.118257	NM_178722	ENSMUSG00000050945	Zfp438	9430031G09|9430091M14Rik|B830013J05Rik	zinc finger protein 438	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16046183-4	chr7	16046074	16046274	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25671.0	NM_001347559	666528.0	Mm.290718	NM_001099277	ENSMUSG00000078796	Zfp541	EG666528|Znf541	zinc finger protein 541	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-7113085-4	chr1	7112985	7113185	+	973.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183028, intron 1 of 5)	intron (NM_183028, intron 1 of 5)	24165.0	NM_183028	319263.0	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-38292188-4	chr15	38292063	38292263	+	998.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001289471, exon 5 of 5)	3' UTR (NM_001289471, exon 5 of 5)	7737.0	NM_001357677	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-153501992-8	chr1	153501885	153502085	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14325.0	NM_007842	13211.0	Mm.20000	NM_007842	ENSMUSG00000042699	Dhx9	AI326842|Ddx9|HEL-5|NDHII|RHA|mHEL-5	DEAH (Asp-Glu-Ala-His) box polypeptide 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124631784-2	chr5	124631683	124631883	+	820.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011596, intron 1 of 19)	intron (NM_011596, intron 1 of 19)	2731.0	NM_011596	21871.0	Mm.1158	NM_011596	ENSMUSG00000038023	Atp6v0a2	8430408C20Rik|AI385560|ATP6a2|AW489264|Atp6n1d|Atp6n2|C76904|ISF|J6B7|SHIF|Stv1|TJ6M|TJ6s|Tj6|V-ATPase 116 kDa|V-ATPase a2	ATPase, H+ transporting, lysosomal V0 subunit A2	protein-coding	0.542006971090192	0.5897651685833	0.574571346431435	0.562559228630297	1.63895365434236	0.848024900377375	1.31371511522445	1.8965719510461	5.02965220759079	0.00164158467606588	0.0290212175001548
Merged-chr15-74514506-2	chr15	74514406	74514606	+	790.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1690.0	NM_174991	107831.0	Mm.43133	NM_174991	ENSMUSG00000034730	Adgrb1	B830018M07Rik|Bai1|R75078|mKIAA4089	adhesion G protein-coupled receptor B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-97357578-1	chr7	97357478	97357678	+	625.0	f1_balb.idr	Intergenic	Intergenic	-14039.0	NM_199035	381903.0	Mm.279683	NM_199035	ENSMUSG00000035704	Alg8	AI447372|Gm1089	asparagine-linked glycosylation 8 (alpha-1,3-glucosyltransferase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83417549-7	chr6	83417466	83417666	+	973.738098	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347313, intron 3 of 11)	B1_Mus2|SINE|Alu	-16464.0	NR_105793	102465194.0		NR_105793	ENSMUSG00000099045	Mir6374	Gm27292|mmu-mir-6374	microRNA 6374	ncRNA	1.48309324711872	0.77186057416409	1.41787873083382	1.48070711105941	1.05936634696983	1.71958888310286	0.761276277393304	0.749460286578989	-0.659195011419338	0.650077519785942	0.985422869512088
Merged-chr17-26506228-4	chr17	26506121	26506321	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_013642, exon 4 of 4)	3' UTR (NM_013642, exon 4 of 4)	2251.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-68256336-2	chr10	68256236	68256436	+	766.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023598, intron 2 of 9)	intron (NM_023598, intron 2 of 9)	22390.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	1.71905275614372	1.376813262711	1.32552508479425	2.32959490677767	0.825757311207419	0.897423096085449	2.28191062789723	0.855269366135154	-0.953404458913472	0.475903049725843	0.927406040011522
Merged-chr13-54758168-4	chr13	54758066	54758266	+	652.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_033610)	TTS (NM_033610)	-8292.0	NM_012014	26913.0	Mm.41812	NM_012014	ENSMUSG00000069227	Gprin1	GRIN1|Z16	G protein-regulated inducer of neurite outgrowth 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-64744057-4	chr9	64743948	64744148	+	907.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	-6292.0	NM_017382	53869.0	Mm.1387	NM_017382	ENSMUSG00000004771	Rab11a	-	RAB11A, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-36951759-4	chr17	36951660	36951860	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029632)	promoter-TSS (NM_029632)	32.0	NM_029632	76497.0	Mm.46176	NM_029632	ENSMUSG00000036398	Ppp1r11	1500041B02Rik|AV117883|Hcgv|Tcte5|Tctex-5|Tctex5	protein phosphatase 1, regulatory (inhibitor) subunit 11	protein-coding	5.07287094968647	5.00684578789558	4.71840315503875	4.80990478948534	4.6944107187849	5.94630409746296	5.15889777568933	4.91031042567053	0.405762710836752	0.249213529201902	0.747698903845194
Merged-chr14-57407575-4	chr14	57407480	57407680	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9097.0	NM_030004	68631.0	Mm.25539	NM_030004	ENSMUSG00000021947	Cryl1	1110025H08Rik|A230106J09Rik|C85932|gul3dh	crystallin, lambda 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140321611-4	chr5	140321501	140321701	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010752)	promoter-TSS (NM_010752)	-21.0	NM_001356585	17766.0	Mm.118846	NM_008637	ENSMUSG00000036639	Nudt1	Mth1	nudix (nucleoside diphosphate linked moiety X)-type motif 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-137918555-4	chr3	137918471	137918671	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019920)	promoter-TSS (NM_019920)	16.0	NM_019920	56692.0	Mm.331392	NM_019920	ENSMUSG00000091512	Lamtor3	AW556229|Map2k1ip1|Mapbp|Mapksp1|Mp1	late endosomal/lysosomal adaptor, MAPK and MTOR activator 3	protein-coding	4.89560374646617	4.45559927481463	4.36974681680524	5.21184080100969	5.15308484620972	4.48739297693649	4.57061270345412	5.49245023299064	0.260002796651316	0.488918953581635	0.933746049075178
Merged-chr11-19920475-4	chr11	19920349	19920549	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-3993.0	NM_033523	114716.0	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding	4.81698767992093	5.91813625791167	5.86771332453081	5.55107280267201	5.16607581013452	5.10205925240713	5.90453808028916	5.57486100698691	-0.13362480101728	0.674589566199977	0.99440487726309
Merged-chr3-122035813-2	chr3	122035713	122035913	+	552.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8647.0	NM_007378	11304.0	Mm.3918	NM_007378	ENSMUSG00000028125	Abca4	AW050280|Abc10|Abcr|D430003I15Rik|RmP	ATP-binding cassette, sub-family A (ABC1), member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46242122-3	chr8	46242030	46242230	+	702.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31068.0	NM_007450	11739.0	Mm.16228	NM_007450	ENSMUSG00000031633	Slc25a4	AU019225|Ant1|mANC1	solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-34370543-2	chr2	34370443	34370643	+	753.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290576, intron 2 of 7)	intron (NM_001290576, intron 2 of 7)	1502.0	NM_001290576	18516.0	Mm.239941	NM_016768	ENSMUSG00000038718	Pbx3	-	pre B cell leukemia homeobox 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-51217183-1	chr3	51217083	51217283	+	630.0	f0_balb.idr	Intergenic	Intergenic	-7264.0	NM_009834	12457.0	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3779886-4	chr4	3779788	3779988	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 10 of 12)	MLT1A0|LTR|ERVL-MaLR	55767.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	0.403311756876476	1.72063787867635	2.67616073508942	1.30233790777545	0.408653048757971	0.487414209880311	0.463230530080512	0.441550257034084	-5.42003807273528	0.00070456057787754	0.0146929046582411
Merged-chr3-149085541-2	chr3	149085441	149085641	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-130906.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	-1.08935270637492	-0.886797738122286	-1.07931382367012	-1.085946125483	-1.08884631416798	-1.06531673914619	-1.07670954795313	-0.537406822252469	1.70361599629959	0.594876877604983	1
Merged-chr1-121509345-4	chr1	121509313	121509513	+	985.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010483)	TTS (NM_010483)	19052.0	NM_010483	15564.0	Mm.4833	NM_010483	ENSMUSG00000050534	Htr5b	5-Ht5b	5-hydroxytryptamine (serotonin) receptor 5B	protein-coding	4.80987580100589	3.70022877317407	4.54331461952831	4.81349991025263	3.8293531953724	2.9563010979323	4.48079598911187	4.19806926700533	-0.734852530640956	0.121755914619389	0.547245267450283
Merged-chr9-90251886-3	chr9	90251772	90251972	+	702.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 1 of 12)	intron (NM_194334, intron 1 of 12)	18897.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3900030-2	chr12	3899930	3900130	+	634.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001271753, exon 15 of 23)	exon (NM_001271753, exon 15 of 23)	8286.0	NM_153743	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-10878670-2	chr15	10878570	10878770	+	761.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49619.0	NR_040357	100502601.0	Mm.399434	NR_040357		Gm19276	-	predicted gene, 19276	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-66969095-5	chr15	66968970	66969170	+	819.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008681, intron 1 of 15)	CpG	571.0	NM_008681	17988.0	Mm.30837	NM_008681	ENSMUSG00000005125	Ndrg1	CAP43|CMT4D|DRG1|HMSNL|NMSL|Ndr1|Ndrl|PROXY1|RTP|TDD5	N-myc downstream regulated gene 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-120110348-4	chr9	120110238	120110438	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144793)	promoter-TSS (NM_144793)	-61.0	NM_144793	208638.0	Mm.236656	NM_144793	ENSMUSG00000032519	Slc25a38	AV019094|BC010801|appoptosin	solute carrier family 25, member 38	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-71344872-4	chr10	71344800	71345000	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134007)	promoter-TSS (NM_134007)	-51.0	NM_134007	52637.0	Mm.254114	NM_134007	ENSMUSG00000037710	Cisd1	AU043990|AW743335|D10Ertd214e|Zcd1|mitoNEET	CDGSH iron sulfur domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-64001776-4	chr7	64001672	64001872	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62857.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133005444-4	chr4	133005333	133005533	+	738.395874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6073.0	NM_146155	230793.0	Mm.31816	NM_146155	ENSMUSG00000037692	Ahdc1	D030015G18Rik	AT hook, DNA binding motif, containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44326716-6	chr9	44326583	44326783	+	991.138916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007875)	promoter-TSS (NM_007875)	-162.0	NM_007875	13478.0	Mm.18353	NM_007875	ENSMUSG00000032123	Dpagt1	AU021132|Dpagt2|GPT|Gnpta	dolichyl-phosphate (UDP-N-acetylglucosamine) acetylglucosaminephosphotransferase 1 (GlcNAc-1-P transferase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-82145340-2	chr15	82145240	82145440	+	660.916626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-1929.0	NM_033218	20788.0	Mm.38016	NM_033218	ENSMUSG00000022463	Srebf2	AI608257|SREBP-2|SREBP2|SREBP2gc|bHLHd2|lop13|nuc	sterol regulatory element binding factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-109425684-3	chr3	109425619	109425819	+	936.0833130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020505, intron 2 of 26)	intron (NM_020505, intron 2 of 26)	85036.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	2.98760962498909	3.36074028133377	3.1712068344888	3.61980520184341	1.7634578617925	1.44787995614769	1.39664306542961	2.74108064423428	-2.5854551711981	0.0019077446421548	0.0321777697515089
Merged-chr11-34001899-3	chr11	34001781	34001981	+	933.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155520, intron 4 of 4)	intron (NR_155520, intron 4 of 4)	-8688.0	NM_001190886	70357.0	Mm.252514	NM_027398	ENSMUSG00000053519	Kcnip1	KCHIP1|Kchip1.2	Kv channel-interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-147918509-4	chr5	147918414	147918614	+	824.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23699.0	NM_027872	71706.0	Mm.153218	NM_027872	ENSMUSG00000029650	Slc46a3	1200006F02Rik	solute carrier family 46, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-43547054-4	chr13	43546933	43547133	+	930.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081059, intron 6 of 8)	intron (NM_001081059, intron 6 of 8)	13158.0	NM_001081059	76137.0	Mm.426290	NM_001081059	ENSMUSG00000021371	Mcur1	6230416A05Rik|AU015498|AV136929|AW554392|C88263|Ccdc90a	mitochondrial calcium uniporter regulator 1	protein-coding	0.0786815114590312	0.231188897828899	-0.375795957664895	-0.378883068331316	-0.239945440587308	-0.37088235804023	-0.374912517078072	-0.378344120744535	-2.68808902413371	0.283368007136013	1
Merged-chr1-85087065-1	chr1	85086965	85087165	+	692.0	f1_balb.idr	Intergenic	RMER19C|LTR|ERVK	22788.0	NM_213615	381287.0	Mm.487565	NM_213615	ENSMUSG00000089844	A530032D15Rik	Gm1888	RIKEN cDNA A530032D15Rik gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-30510502-2	chr6	30510402	30510602	+	602.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178625)	promoter-TSS (NM_178625)	653.0	NM_027073	75647.0	Mm.46117	NM_027073	ENSMUSG00000029784	Ssmem1	1700016K02Rik|1700025E21Rik	serine-rich single-pass membrane protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97415460-4	chr11	97415334	97415534	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-34726.0	NM_021493	58996.0	Mm.394118	NM_021493	ENSMUSG00000049807	Arhgap23	A330041B18Rik	Rho GTPase activating protein 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-7341313-2	chr19	7341213	7341413	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_007928, exon 1 of 18)	5' UTR (NM_007928, exon 1 of 18)	547.0	NM_001080389	13728.0	Mm.258986	NM_007928	ENSMUSG00000024969	Mark2	EMK-1|Emk|Par-1|Par-1b	MAP/microtubule affinity regulating kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-42449303-3	chr17	42449189	42449389	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355270, intron 2 of 2)	intron (NM_001355270, intron 2 of 2)	132689.0	NM_001355270	627626.0	Mm.390999	NM_028474	ENSMUSG00000042256	Ptchd4	3110082D06Rik|Gm321	patched domain containing 4	protein-coding	5.81110199982894	6.4314301217296	6.15666502323611	6.03832762615512	2.17964466056463	3.89964106808997	4.48920490472488	2.90058925204313	-2.97126421541093	7.35648822951764e-06	0.000357823563963862
Merged-chr17-64590682-4	chr17	64590572	64590772	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10977.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-29781961-4	chr6	29781867	29782067	+	977.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001171000, intron 1 of 16)	intron (NM_001171000, intron 1 of 16)	13524.0	NM_001171000	74340.0	Mm.210899	NM_021414	ENSMUSG00000029772	Ahcyl2	4631427C17Rik|AI227036|Adohcyase3|mKIAA0828	S-adenosylhomocysteine hydrolase-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-142071072-4	chr4	142070976	142071176	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145402, intron 1 of 2)	intron (NM_145402, intron 1 of 2)	-13222.0	NR_027137	100038693.0	Mm.402714	NR_027137	ENSMUSG00000073728	Tmem51os1	Gm10565|Tmem51as1	Tmem51 opposite strand 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-62095637-4	chr18	62095466	62095666	+	932.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	84415.0	NM_007420	11555.0	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-148160129-4	chr4	148160006	148160206	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_176848)	promoter-TSS (NM_176848)	-12.0	NR_104374	230903.0	Mm.220327	NM_173401	ENSMUSG00000029001	Fbxo44	5730411K09|AV001623|FBG3|FBX30|Fbx6a|Fbxo6a	F-box protein 44	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102381431-2	chr12	102381331	102381531	+	999.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177620, intron 7 of 9)	intron (NM_177620, intron 7 of 9)	58382.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-79962450-4	chr11	79962341	79962541	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144826)	promoter-TSS (NM_144826)	-54.0	NM_144826	216987.0	Mm.274961	NM_144826	ENSMUSG00000035575	Utp6	4732497O03Rik|HCA66	UTP6 small subunit processome component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-115043834-2	chr14	115043734	115043934	+	639.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029816)	promoter-TSS (NR_029816)	-17.0	NR_029736	387135.0		NR_029736	ENSMUSG00000065403	Mir18	Mirn18|mir-18a|mmu-mir-18|mmu-mir-18a	microRNA 18	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-110629386-2	chr8	110629286	110629486	+	742.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_151675, intron 1 of 17)	intron (NR_151675, intron 1 of 17)	10819.0	NR_151675	234729.0	Mm.274894	NM_146216	ENSMUSG00000010936	Vac14	AA959718|BC032215|D8Wsu151e|Tax1bp2|Trx|ingls	Vac14 homolog (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-177014976-2	chr1	177014876	177015076	+	547.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357390, intron 18 of 18)	intron (NM_001357390, intron 18 of 18)	-178843.0	NR_037996	15365.0	Mm.441435	NR_037996		Hmga2-ps1	EG666235|Gm7996|Hmgic-ps1|[y]i-c	high mobility group AT-hook 2, pseudogene 1	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-135146885-6	chr1	135146824	135147024	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026823)	promoter-TSS (NM_026823)	90.0	NM_026823	68724.0	Mm.174998	NM_026823	ENSMUSG00000026426	Arl8a	1110033P22Rik|Arl10b|gie2	ADP-ribosylation factor-like 8A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-80293851-2	chr17	80293751	80293951	+	660.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_194269, intron 2 of 4)	Lx3A|LINE|L1	-3375.0	NM_001163759	106794.0	Mm.12412	NM_198942	ENSMUSG00000035051	Dhx57	AW494914	DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-34032418-3	chr11	34032289	34032489	+	764.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155520, intron 4 of 4)	intron (NR_155520, intron 4 of 4)	-14539.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70052367-2	chr14	70052267	70052467	+	660.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028560, intron 6 of 6)	intron (NM_028560, intron 6 of 6)	-25078.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99435684-1	chr7	99435584	99435784	+	651.0	f1_balb.idr	intron (NM_001362168, intron 4 of 17)	intron (NM_001362168, intron 4 of 17)	-30320.0	NM_028145	72184.0	Mm.153585	NM_028145	ENSMUSG00000035298	Klhl35	2810406K13Rik	kelch-like 35	protein-coding	-0.0207346769487132	0.198831943165438	0.501536925574867	-0.153072261442759	0.105083692313843	-0.143978776556595	-0.1485600699216	-0.15245986493762	-2.15303057292685	0.339868032762074	1
Merged-chr9-118855812-2	chr9	118855712	118855912	+	593.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 9 of 13)	ORR1D2|LTR|ERVL-MaLR	-70724.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-125454682-4	chr1	125454604	125454804	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18977.0	NM_001205385	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-97055819-4	chr5	97055699	97055899	+	965.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080708, intron 9 of 15)	intron (NM_080708, intron 9 of 15)	55797.0	NM_001359910	231474.0	Mm.332505	NM_198422	ENSMUSG00000055725	Paqr3	6330415A20Rik|AY424292|RKTG	progestin and adipoQ receptor family member III	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21506844-2	chr9	21506744	21506944	+	670.166626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001324510)	TTS (NM_001324510)	3050.0	NM_001324510	17083.0	Mm.196618	NM_010744	ENSMUSG00000032180	Tmed1	Il1rl1l|Ly84l|St2l	transmembrane p24 trafficking protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-4594878-4	chr11	4594778	4594978	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028860)	promoter-TSS (NM_028860)	-63.0	NM_028860	74302.0	Mm.425669	NM_028860	ENSMUSG00000034354	Mtmr3	1700092A20Rik|AI255150|AW557713|FYVE-DSP1|ZFYVE10|mKIAA0371	myotubularin related protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-26119313-4	chr8	26119212	26119412	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207659)	promoter-TSS (NM_207659)	-56.0	NM_001357292	77733.0	Mm.291906	NM_029965	ENSMUSG00000013878	Rnf170	6720407G21Rik|AI481227	ring finger protein 170	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-136311374-2	chr4	136311274	136311474	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355182)	promoter-TSS (NM_001355182)	-224.0	NM_001355182	74326.0	Mm.31051	NM_028871	ENSMUSG00000066037	Hnrnpr	2610003J05Rik|2610528B01Rik|Hnrpr	heterogeneous nuclear ribonucleoprotein R	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90703315-2	chr2	90703215	90703415	+	758.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021512, intron 17 of 36)	B3A|SINE|B2	26100.0	NM_021512	59015.0	Mm.24532	NM_021512	ENSMUSG00000051329	Nup160	160kDa|2810011M03Rik|AA414952|AU020188|Gtl-13|Gtl1-13|Gtl13|mKIAA0197	nucleoporin 160	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-71633000-4	chr6	71632871	71633071	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173001)	promoter-TSS (NM_173001)	-54.0	NM_001362200	104263.0	Mm.260479	NM_173001	ENSMUSG00000053470	Kdm3a	1700105C21Rik|C230043E16Rik|JHDM2a|Jmjd1|Jmjd1a|KDM2A|TGSA|Tsga	lysine (K)-specific demethylase 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-138919220-4	chr7	138919117	138919317	+	888.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9711.0	NM_009760	12176.0	Mm.378890	NM_009760	ENSMUSG00000078566	Bnip3	Nip3	BCL2/adenovirus E1B interacting protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116630855-2	chr11	116630722	116630922	+	698.916626	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17D2|LTR|ERVK	-3803.0	NM_172572	217344.0	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	0.906345977334817	0.452281602674797	0.444704080895695	0.745364801340856	0.81734762605059	0.453986868515108	0.780702925268808	1.16941373860463	1.00320454490767	0.553007587465894	1
Merged-chr9-61982403-2	chr9	61982303	61982503	+	893.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028748, intron 2 of 7)	ID_B1|SINE|B4	-35604.0	NM_024245	71819.0	Mm.259374	NM_024245	ENSMUSG00000032254	Kif23	3110001D19Rik|C87313|CHO1|Knsl5|MKLP-1|MKLP1	kinesin family member 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-100908049-2	chr12	100907949	100908149	+	554.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175493, intron 1 of 2)	CpG	149.0	NM_175493	238377.0	Mm.32160	NM_175493	ENSMUSG00000047415	Gpr68	BB131428|Ogr1	G protein-coupled receptor 68	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-78259915-1	chr9	78259815	78260015	+	600.0	f1_balb.idr	intron (NM_001243092, intron 2 of 6)	intron (NM_001243092, intron 2 of 6)	2786.0	NM_001243092	100042295.0	Mm.197422	NM_001243092	ENSMUSG00000111709	Gm3776	-	predicted gene 3776	protein-coding	0.27396014203392	0.294534870279072	0.287802435053399	0.282602963009126	0.66128742085542	0.798600385016004	0.754904074493619	0.922947703843466	4.29121298753631	0.0212503932573982	1
Merged-chr7-127297996-2	chr7	127297896	127298096	+	996.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253873, intron 2 of 30)	intron (NM_001253873, intron 2 of 30)	1736.0	NM_001253874	16408.0	Mm.1618	NM_008400	ENSMUSG00000030830	Itgal	(p180)|Cd11a|LFA-1|LFA-1A|Ly-15|Ly-21	integrin alpha L	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140610502-3	chr5	140610378	140610578	+	855.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008494, intron 1 of 7)	intron (NM_008494, intron 1 of 7)	3137.0	NM_008494	16848.0	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99421360-4	chr15	99421228	99421428	+	944.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001001884)	TTS (NM_001001884)	28109.0	NM_001171035	110213.0	Mm.16769	NM_026669	ENSMUSG00000023010	Tmbim6	5031406P05Rik|Bi1|Tegt	transmembrane BAX inhibitor motif containing 6	protein-coding	4.43096507414056	2.91926419265858	3.95799618239062	4.3532233920805	4.34953934793183	3.70807354695977	4.29714674392798	4.54675010088344	0.29150041728681	0.543117822061275	0.955286497618918
Merged-chr9-44268204-4	chr9	44268117	44268317	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163743)	promoter-TSS (NM_001163743)	-30.0	NM_001163743	270151.0	Mm.3957	NM_178420	ENSMUSG00000032109	Nlrx1	BC034204|NOD9	NLR family member X1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-138128057-2	chr1	138127957	138128157	+	642.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001268286, intron 2 of 28)	intron (NM_001268286, intron 2 of 28)	47069.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-37748169-4	chr3	37748046	37748246	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23786.0	NM_198657	381438.0	Mm.490549	NM_198657	ENSMUSG00000058174	Gm5148	EG381438	predicted gene 5148	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-90432515-2	chr9	90432415	90432615	+	655.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-161746.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-123951346-4	chr9	123951229	123951429	+	763.383301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17363.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-56757027-2	chr19	56756927	56757127	+	631.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34655.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-28723197-1	chr6	28723097	28723297	+	755.0	f0_balb.idr	intron (NM_019776, intron 13 of 23)	intron (NM_019776, intron 13 of 23)	108550.0	NM_138682	192198.0	Mm.443660	NM_138682	ENSMUSG00000049939	Lrrc4	MBAG1|NGL-2|NGL2|NLG-2|Nag14	leucine rich repeat containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-120156631-2	chr6	120156531	120156731	+	987.400024	f1_balb.idr|f1_c57bl6.idr	intron (NM_016718, intron 1 of 3)	BC1_Mm|scRNA|scRNA	-37192.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-32434294-4	chr16	32434199	32434399	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163160, intron 1 of 8)	intron (NM_001163160, intron 1 of 8)	3069.0	NM_001163160	13026.0	Mm.98775	NM_009981	ENSMUSG00000005615	Pcyt1a	CTalpha|Cctalpha|Ctpct|Cttalpha	phosphate cytidylyltransferase 1, choline, alpha isoform	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-145177868-3	chr5	145177759	145177959	+	759.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291249, intron 6 of 7)	intron (NM_001291249, intron 6 of 7)	10646.0	NM_001291248	54188.0	Mm.196884	NM_178576	ENSMUSG00000029625	Cpsf4	30kDa|C79664	cleavage and polyadenylation specific factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-7204275-2	chr15	7204175	7204375	+	630.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	63733.0	NM_013584	16880.0	Mm.149720	NM_013584	ENSMUSG00000054263	Lifr	A230075M04Rik|AW061234|LIF	leukemia inhibitory factor receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-51523990-4	chr6	51523880	51524080	+	967.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001127349)	promoter-TSS (NM_001127349)	77.0	NM_001127349	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	1.73232041466718	2.70733129336387	2.7166975540134	1.6137358616105	1.91828238701018	2.32966086081806	3.34304502843151	2.91108325163272	0.900684866436168	0.298240929821101	0.800257675359925
Merged-chr7-45038335-1	chr7	45038235	45038435	+	662.5	f1_c57bl6.idr	intron (NM_175022, intron 6 of 13)	intron (NM_175022, intron 6 of 13)	14546.0	NM_175022	233210.0	Mm.219137	NM_175022	ENSMUSG00000046574	Prr12	6720469B10|BC058674	proline rich 12	protein-coding	0.732886753507801	0.440876328486533	0.429626842951791	0.420808160942233	0.741259221702284	1.67741665328216	0.650288212810762	1.06324988475527	3.23002476671513	0.0583609926197903	0.356917478410832
Merged-chr17-73027300-4	chr17	73027200	73027400	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-80685.0	NM_001177968	225010.0	Mm.329194	NM_001081071	ENSMUSG00000054469	Lclat1	AI181996|Agpat8|Alcat1|Gm91|Lycat	lysocardiolipin acyltransferase 1	protein-coding	3.5611896760578	1.8828001275488	4.32018588451577	3.88372458904994	3.8886926283536	4.15423263197054	3.57701641105309	4.52403079766509	0.570804536667667	0.335692258435832	0.836089117450301
Merged-chr16-76335120-2	chr16	76335020	76335220	+	621.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358238, intron 2 of 3)	Lx|LINE|L1	37929.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107597176-2	chr9	107597076	107597276	+	957.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_111986)	TTS (NR_111986)	8226.0	NM_009153	20347.0	Mm.4083	NM_009153	ENSMUSG00000057969	Sema3b	SemA|Semaa|sema5|semaV	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-69661324-2	chr18	69661224	69661424	+	684.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 15 of 19)	intron (NM_001361128, intron 15 of 19)	-264235.0	NM_201362	381175.0	Mm.266831	NM_201362	ENSMUSG00000038903	Ccdc68	BC046343	coiled-coil domain containing 68	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-121423691-2	chr10	121423591	121423791	+	544.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_138956, intron 1 of 4)	intron (NM_138956, intron 1 of 4)	52559.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-113601303-4	chr13	113601204	113601404	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130796, intron 1 of 1)	intron (NM_130796, intron 1 of 1)	17260.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80013449-2	chr10	80013349	80013549	+	709.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347081, intron 40 of 45)	intron (NM_001347081, intron 40 of 45)	-3223.0	NM_001142701	70719.0	Mm.243954	NM_027521	ENSMUSG00000035697	Arhgap45	6330406L22Rik|AW539505|Ha-1|Hmha1	Rho GTPase activating protein 45	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36792366-3	chr18	36792258	36792458	+	862.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001305627, exon 12 of 12)	3' UTR (NM_001305627, exon 12 of 12)	-1565.0	NM_025594	66492.0	Mm.251155	NM_025594	ENSMUSG00000001383	Zmat2	2610510D14Rik|2900082I05Rik	zinc finger, matrin type 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-87552065-3	chr6	87551964	87552164	+	752.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18805.0	NM_001286610	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55330678-2	chr19	55330578	55330778	+	645.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360431, intron 3 of 8)	intron (NM_001360431, intron 3 of 8)	14621.0	NM_001293686	53611.0	Mm.258637	NM_016862	ENSMUSG00000024983	Vti1a	1110014F16Rik|1110018K19Rik|4921537J05Rik|MVti1|MVti1a|Vti1|Vti1-rp2	vesicle transport through interaction with t-SNAREs 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-55965467-2	chr16	55965367	55965567	+	609.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024218)	promoter-TSS (NM_024218)	-808.0	NM_024218	68193.0	Mm.29221	NM_024218	ENSMUSG00000098274	Rpl24	0610008L05Rik|Bst	ribosomal protein L24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44720638-2	chr9	44720538	44720738	+	832.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153537, intron 4 of 21)	intron (NM_153537, intron 4 of 21)	14560.0	NM_153537	102693.0	Mm.28639	NM_153537	ENSMUSG00000048537	Phldb1	AU041016|D330037A14Rik|Ll5a	pleckstrin homology like domain, family B, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-30686722-4	chr16	30686671	30686871	+	894.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	87048.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	-0.179073355244617	0.297844566666271	-0.170561990264141	-0.173771741580294	-0.0419373205877325	-0.1654390439524	0.266434081296138	0.115571261044901	0.80872887617325	0.719701477635327	1
Merged-chr17-17409224-1	chr17	17409124	17409324	+	558.0	f1_c57bl6.idr	intron (NM_025681, intron 1 of 5)	intron (NM_025681, intron 1 of 5)	6538.0	NM_025681	66643.0	Mm.268018	NM_025681	ENSMUSG00000047786	Lix1	5730466L18Rik	limb and CNS expressed 1	protein-coding	-1.18378942727406	-1.15669478905697	-0.457913181653105	-1.17806440097404	-1.18323730008524	-1.15415234459186	-1.16577117532349	-1.17633933179771	-2.81844548480871	0.412768592413622	1
Merged-chr5-46536450-2	chr5	46536350	46536550	+	626.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3A|LINE|L1	-604041.0	NR_110478	78106.0	Mm.243807	NR_110478	ENSMUSG00000106602	4930405L22Rik	-	RIKEN cDNA 4930405L22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-16857235-3	chr6	16857133	16857333	+	952.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031198, intron 2 of 6)	intron (NM_031198, intron 2 of 6)	41208.0	NM_031198	21426.0	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-110999346-3	chr9	110999185	110999385	+	794.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152179, intron 2 of 6)	intron (NR_152179, intron 2 of 6)	-9572.0	NM_153100	235636.0	Mm.441138	NM_153100	ENSMUSG00000066319	Rtp3	Tmem7	receptor transporter protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117176027-2	chr11	117175927	117176127	+	638.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-23634.0	NM_001113486	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-138256640-4	chr2	138256541	138256741	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001025431)	promoter-TSS (NM_001025431)	57.0	NM_001025431	228662.0	Mm.153405	NM_145534	ENSMUSG00000062098	Btbd3	mKIAA0952	BTB (POZ) domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-119463584-2	chr1	119463484	119463684	+	702.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	41198.0	NM_022327	64143.0	Mm.27832	NM_022327	ENSMUSG00000004451	Ralb	5730472O18Rik	v-ral simian leukemia viral oncogene B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-71355420-2	chr10	71355320	71355520	+	881.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027184, intron 1 of 5)	B4A|SINE|B4	7657.0	NM_027184	69718.0	Mm.245867	NM_027184	ENSMUSG00000060733	Ipmk	2410017C19Rik|AA408208|Impk	inositol polyphosphate multikinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-40157930-1	chr4	40157830	40158030	+	572.0	f0_c57.idr	intron (NM_007386, intron 1 of 20)	intron (NM_007386, intron 1 of 20)	14665.0	NM_007386	11428.0	Mm.331547	NM_007386	ENSMUSG00000028405	Aco1	Aco-1|Irebp|Irp1	aconitase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-54143542-4	chr6	54143437	54143637	+	995.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163640, intron 1 of 12)	intron (NM_001163640, intron 1 of 12)	103605.0	NM_001163640	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	3.70230168422072	4.46178776264512	3.56520231159602	4.01135869500338	3.46664517825452	2.8685714847597	3.75727115340383	4.32593525683106	-0.369736060888061	0.482368278687617	0.930060200507932
Merged-chr2-68214561-2	chr2	68214461	68214661	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016866, intron 17 of 17)	intron (NM_016866, intron 17 of 17)	109889.0	NM_020283	26877.0	Mm.226435	NM_020283	ENSMUSG00000034780	B3galt1	beta3Gal-T1	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-56751718-3	chr10	56751619	56751819	+	594.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	C-rich|Low_complexity|Low_complexity	319738.0	NR_152768	102640560.0	Mm.417249	NR_152768		Gm36595	-	predicted gene, 36595	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115564317-4	chr11	115564248	115564448	+	961.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001002929)	promoter-TSS (NM_001002929)	-96.0	NM_001002929	445007.0	Mm.4379	NM_001002929	ENSMUSG00000020739	Nup85	Pcnt1|frount	nucleoporin 85	protein-coding	1.15092872791469	1.32920533079229	0.636501195589153	0.815295445251301	1.26155752422664	1.56343280395882	0.638994368813573	0.629267145111708	0.358615409095001	0.817334760041464	0.998431161219273
Merged-chr6-128143689-4	chr6	128143627	128143827	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175414)	promoter-TSS (NM_175414)	-149.0	NM_001356301	109246.0	Mm.21814	NM_175414	ENSMUSG00000030352	Tspan9	6720474K14Rik|9430079M16Rik|AU018597|Tspan-9	tetraspanin 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3727340-2	chr12	3727240	3727440	+	891.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355528, intron 10 of 17)	intron (NM_001355528, intron 10 of 17)	-79640.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-5125357-5	chr7	5125299	5125499	+	941.93335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009028, exon 1 of 1)	exon (NM_009028, exon 1 of 1)	551.0	NM_009028	19428.0	Mm.322186	NM_009028	ENSMUSG00000083649	Rasl2-9	M2|Ran|Ran/M2|Rasl2-9-ps	RAS-like, family 2, locus 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-117511051-2	chr5	117510951	117511151	+	788.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001312914, intron 3 of 19)	intron (NM_001312914, intron 3 of 19)	97049.0	NM_001312914	333050.0	Mm.437947	NM_001034873	ENSMUSG00000061578	Ksr2	-	kinase suppressor of ras 2	protein-coding	0.880259521327681	0.636231013404222	1.08612173141929	1.15925309160863	0.887453878425547	0.638171662906033	1.09612706839713	1.16650116495621	0.0357730226646249	0.98076031678608	1
Merged-chr3-9796226-2	chr3	9796126	9796326	+	580.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001195031, intron 1 of 8)	intron (NM_001195031, intron 1 of 8)	37453.0	NM_053182	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-29269058-2	chr6	29268958	29269158	+	826.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3430.0	NM_001190461	69573.0	Mm.45161	NM_023516	ENSMUSG00000043421	Hilpda	2310016C08Rik|AW049004|Hig2	hypoxia inducible lipid droplet associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-74394946-1	chr17	74394846	74395046	+	742.5	f0_balb.idr	promoter-TSS (NM_144798)	promoter-TSS (NM_144798)	-662.0	NM_001252478	210148.0	Mm.243943	NM_144798	ENSMUSG00000024069	Slc30a6	9530029F08Rik|ZnT6	solute carrier family 30 (zinc transporter), member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70064990-2	chr14	70064890	70065090	+	690.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12455.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-137955682-4	chr3	137955594	137955794	+	987.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011932, intron 3 of 8)	MIR|SINE|MIR	25855.0	NM_001310753	26377.0	Mm.254835	NM_011932	ENSMUSG00000028159	Dapp1	Bam32	dual adaptor for phosphotyrosine and 3-phosphoinositides 1	protein-coding	3.15552328509368	1.69375897700359	3.50180916145067	2.4514167300429	3.32591299777249	4.14224370878178	3.67004716979987	3.0840505378794	1.17241713205251	0.0866004262832548	0.452408671065236
Merged-chr15-5708650-4	chr15	5708546	5708746	+	928.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	212328.0	NR_045274	71432.0	Mm.291087	NR_045274	ENSMUSG00000110018	5430437J10Rik	-	RIKEN cDNA 5430437J10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-39039950-4	chr12	39039840	39040040	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	256229.0	NM_001163154	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-105868810-2	chr5	105868710	105868910	+	868.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7758.0	NR_030777	54367.0	Mm.248876	NM_018759	ENSMUSG00000029290	Zfp326	5730470H14Rik|ZAN75|Znf326	zinc finger protein 326	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91475926-3	chr16	91475835	91476035	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR16|LTR|ERVK	-9280.0	NM_010508	15975.0	Mm.502	NM_010508	ENSMUSG00000022967	Ifnar1	Ifar|Ifnar|Ifrc|Infar	interferon (alpha and beta) receptor 1	protein-coding	2.87442973246044	1.70011542356101	2.58478784887087	2.09175021154116	4.82291053444198	4.34916733318018	4.50116049952118	5.00342051215904	3.38825831488482	3.50261566716892e-09	4.88655613659218e-07
Merged-chr15-36714590-2	chr15	36714490	36714690	+	690.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	76342.0	NM_001253807	22631.0	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-31934641-2	chr16	31934541	31934741	+	966.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_172822, intron 1 of 2)	intron (NM_172822, intron 1 of 2)	790.0	NM_172822	239827.0	Mm.440388	NM_172822	ENSMUSG00000045625	Pigz	F630022B06Rik	phosphatidylinositol glycan anchor biosynthesis, class Z	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83753741-4	chr11	83753630	83753830	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145432)	promoter-TSS (NM_145432)	93.0	NM_145432	217026.0	Mm.117874	NM_145432	ENSMUSG00000000976	Heatr6	2700008B19Rik|BB135312|BB249351	HEAT repeat containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-148830796-2	chr6	148830696	148830896	+	745.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081113, intron 1 of 24)	intron (NM_001081113, intron 1 of 24)	671.0	NM_001081113	320727.0	Mm.260105	NM_001081113	ENSMUSG00000040029	Ipo8	6230418K12Rik|Abcc10|C130009K11Rik|MRP7|OM-1|Om1|Ranbp8	importin 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-13471687-4	chr3	13471574	13471774	+	891.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178631)	promoter-TSS (NM_178631)	19.0	NM_001357035	76897.0	Mm.422625	NM_178631	ENSMUSG00000039717	Ralyl	0710005M24Rik	RALY RNA binding protein-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-77369307-3	chr10	77369208	77369408	+	778.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024838, intron 1 of 11)	intron (NM_001024838, intron 1 of 11)	48965.0	NM_130895	110532.0	Mm.276815	NM_130895	ENSMUSG00000020262	Adarb1	1700057H01Rik|AW124433|AW558573|Adar2|BB220382|D10Bwg0447e|Red1	adenosine deaminase, RNA-specific, B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-24510674-4	chr9	24510575	24510775	+	902.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7535.0	NM_172920	244745.0	Mm.38526	NM_172920	ENSMUSG00000043067	Dpy19l1	1100001I19Rik|6030402K12|AI225861|AW558481	dpy-19-like 1 (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180871391-2	chr1	180871291	180871491	+	935.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	20240.0	NM_145943	208768.0	Mm.272625	NM_145943	ENSMUSG00000038806	Sde2	-	SDE2 telomere maintenance homolog (S. pombe)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-55056237-3	chr6	55056125	55056325	+	885.211121	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_180678, intron 7 of 16)	MER3|DNA|hAT-Charlie	18224.0	NM_180678	353172.0	Mm.250004	NM_180678	ENSMUSG00000029777	Gars	GENA202|Gena201|Nmf249|Sgrp23	glycyl-tRNA synthetase	protein-coding	3.51928745467141	3.20027308637105	3.9503196249539	3.33114596385693	1.72280990481725	2.40695337705016	2.64574821834617	2.91796777321878	-1.81545287593091	0.00718413674189564	0.0861378473976655
Merged-chr15-102990988-2	chr15	102990888	102991088	+	680.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_010466, exon 1 of 2)	exon (NM_010466, exon 1 of 2)	449.0	NM_010466	15426.0	Mm.6167	NM_010466	ENSMUSG00000001657	Hoxc8	D130011F21Rik|Hox-3.1	homeobox C8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-44611239-4	chr11	44611110	44611310	+	668.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6890.0	NM_001290711	13591.0	Mm.439662	NM_007897	ENSMUSG00000057098	Ebf1	Ebf|O/E-1|OE-1|Olf-1|Olf1	early B cell factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-127254146-4	chr6	127254043	127254243	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53824.0	NR_073373	232386.0	Mm.257367	NR_073373	ENSMUSG00000107153	Gm38404	D130058E03	predicted gene, 38404	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-18115560-1	chr18	18115460	18115660	+	897.0	f0_balb.idr	Intergenic	Intergenic	-534570.0	NR_045374	75162.0	Mm.60874	NR_045374		4930545E07Rik	-	RIKEN cDNA 4930545E07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-111224311-2	chr8	111224211	111224411	+	705.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009149, intron 1 of 25)	intron (NM_009149, intron 1 of 25)	34891.0	NM_009149	20340.0	Mm.276271	NM_009149	ENSMUSG00000003316	Glg1	AI593353|AW537898|CFR|CFR-1|ESL-1|MG-160|MG160|Selel	golgi apparatus protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-9600628-2	chr14	9600528	9600728	+	877.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360141, intron 8 of 9)	intron (NM_001360141, intron 8 of 9)	-283467.0	NR_030680	100042415.0	Mm.235938	NR_030680	ENSMUSG00000089686	Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-51812603-2	chr17	51812503	51812703	+	593.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163630)	promoter-TSS (NM_001163630)	-419.0	NM_001357636	20230.0	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-59201788-4	chr11	59201699	59201899	+	977.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_126101)	promoter-TSS (NR_126101)	632.0	NR_037964	72203.0	Mm.339566	NR_037964		2610507I01Rik	5033414D05Rik	RIKEN cDNA 2610507I01 gene	ncRNA	5.03231579934412	5.60619694955514	4.40493962099252	5.1795123259533	6.20520525834221	6.55264259056269	6.69671714676649	6.61857796771721	1.56796244849201	5.97705380728006e-09	7.73877966687909e-07
Merged-chr6-38950038-4	chr6	38949944	38950144	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 2 of 12)	intron (NM_011539, intron 2 of 12)	31058.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-79589161-1	chr18	79589061	79589261	+	725.0	f1_c57bl6.idr	Intergenic	Intergenic	-457734.0	NM_053117	93737.0	Mm.24678	NM_053117	ENSMUSG00000056214	Pard6g	2410049N21Rik|Par6a	par-6 family cell polarity regulator gamma	protein-coding	0.72572874396721	0.138054997804247	0.130760289200261	0.12509330837266	0.117024088957498	1.02953001009152	0.132373992578659	0.595096145166318	1.30352139995246	0.535898070489274	1
Merged-chr11-70604102-2	chr11	70604002	70604202	+	575.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016713, intron 10 of 30)	intron (NM_016713, intron 10 of 30)	-11792.0	NM_001145537	668433.0	Mm.425687	NM_001145537	ENSMUSG00000087279	4930544D05Rik	-	RIKEN cDNA 4930544D05 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35590621-3	chr17	35590524	35590724	+	760.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23139.0	NM_175148	69542.0	Mm.265291	NM_175148	ENSMUSG00000039269	2300002M23Rik	Stg|emprin	RIKEN cDNA 2300002M23 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-155094171-7	chr4	155094064	155094264	+	910.119019	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356327, intron 6 of 12)	intron (NM_001356327, intron 6 of 12)	7560.0	NM_001356327	76866.0	Mm.200590	NM_001081100	ENSMUSG00000029049	Morn1	2900057D20Rik|4930417P05Rik|AU042805	MORN repeat containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-17253012-3	chr19	17252903	17253103	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	86502.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	4.63438447503014	3.9596871189069	3.25426133087313	4.44367964217997	1.77326576022924	2.88834496497259	3.71866093544412	2.52197536779631	-1.87893637360629	0.00316059553563856	0.0470481702687239
Merged-chr17-34283146-3	chr17	34283024	34283224	+	853.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010378, intron 4 of 4)	intron (NM_010378, intron 4 of 4)	4647.0	NM_010378	14960.0	Mm.235338	NM_010378	ENSMUSG00000036594	H2-Aa	Aalpha|H-2Aa|H2Aa|I-Aalpha|IAalpha|Ia-1|Ia1	histocompatibility 2, class II antigen A, alpha	protein-coding	2.93700982591997	3.84883372509151	1.53140031451526	2.79571136815257	4.05602228444288	3.9939719641789	2.48226163770549	2.21905985057631	0.672215231087121	0.400103711077844	0.885176145862419
Merged-chr7-126554968-2	chr7	126554868	126555068	+	710.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146200, intron 15 of 20)	B3|SINE|B2	11398.0	NM_146200	56347.0	Mm.22776	NM_146200	ENSMUSG00000030738	Eif3c	110kDa|3230401O13Rik|Eif3s8|NIPIL(A3)|NipilA3|Xs|Xsl	eukaryotic translation initiation factor 3, subunit C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-78345975-4	chr11	78345875	78346075	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001313987)	promoter-TSS (NM_001313987)	391.0	NM_001313988	22248.0	Mm.284811	NM_011676	ENSMUSG00000002058	Unc119	D11Bhm52|HRG4|MRG4|Rg4|Rtg4|Unc119h	unc-119 lipid binding chaperone	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-112589558-2	chr12	112589458	112589658	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198411, intron 1 of 22)	intron (NM_198411, intron 1 of 22)	774.0	NM_198411	70435.0	Mm.250193	NM_198411	ENSMUSG00000037679	Inf2	2610204M08Rik|AA589465|AW125550|EG629699	inverted formin, FH2 and WH2 domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-112308923-4	chr13	112308856	112309056	+	739.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168404, intron 2 of 7)	intron (NM_001168404, intron 2 of 7)	20438.0	NM_001168404	77318.0	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-86822690-3	chr6	86822515	86822715	+	930.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26825.0	NR_028298	67170.0	Mm.119489	NR_028298	ENSMUSG00000100164	2610306M01Rik	-	RIKEN cDNA 2610306M01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-23833520-2	chr18	23833420	23833620	+	590.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162941, intron 3 of 7)	intron (NM_001162941, intron 3 of 7)	29550.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-136964796-4	chr6	136964626	136964826	+	982.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10203.0	NM_023898	78600.0	Mm.290622	NM_023898	ENSMUSG00000064330	Pde6h	A930033D18Rik|PDEgamma	phosphodiesterase 6H, cGMP-specific, cone, gamma	protein-coding	2.67039630790137	3.19929283981009	3.09462166755139	2.70158829215432	2.58475229334127	3.01509898496495	3.20735028621391	3.40669194297184	0.278187152123511	0.666162077491058	0.992515300319318
Merged-chr6-85069455-4	chr6	85069350	85069550	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177077)	promoter-TSS (NM_177077)	63.0	NM_177077	75914.0	Mm.159621	NM_177077	ENSMUSG00000033769	Exoc6b	4930569O18Rik|G430127E12Rik|Sec15b|Sec15l2|mKIAA0919	exocyst complex component 6B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-98465642-4	chr4	98465533	98465733	+	859.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005784, intron 16 of 19)	intron (NM_001005784, intron 16 of 19)	54606.0	NM_001355177	12695.0	Mm.90218	NM_007704	ENSMUSG00000061859	Patj	Cipp|Inadl	PATJ, crumbs cell polarity complex component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-64373390-2	chr15	64373290	64373490	+	665.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 1 of 28)	intron (NM_001276461, intron 1 of 28)	9529.0	NM_001276461	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-104003664-4	chr11	104003579	104003779	+	893.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA6|LINE|L1	36808.0	NM_007477	11841.0	Mm.5061	NM_007477	ENSMUSG00000062421	Arf2	-	ADP-ribosylation factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123257732-2	chr5	123257632	123257832	+	933.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29542.0	NM_026000	67151.0	Mm.278997	NM_026000	ENSMUSG00000029440	Psmd9	1500011J20Rik|2610202L11Rik|Bridge-1|P27	proteasome (prosome, macropain) 26S subunit, non-ATPase, 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-104817070-2	chr3	104816970	104817170	+	584.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163440, intron 2 of 20)	intron (NM_001163440, intron 2 of 20)	1235.0	NM_008619	17454.0	Mm.1597	NM_008619	ENSMUSG00000002227	Mov10	C77703|Mov-10	Moloney leukemia virus 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128091655-4	chr10	128091592	128091792	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1091.0	NM_054078	116848.0	Mm.252213	NM_054078	ENSMUSG00000040054	Baz2a	AA415431|C030005G16Rik|C78388|Tip5|Walp3|mKIAA0314	bromodomain adjacent to zinc finger domain, 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102173886-3	chr12	102173801	102174001	+	927.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172152, intron 2 of 16)	ORR1E|LTR|ERVL-MaLR	45174.0	NM_172152	238384.0	Mm.312448	NM_172152	ENSMUSG00000041771	Slc24a4	A930002M03Rik|AW492432|NCKX4	solute carrier family 24 (sodium/potassium/calcium exchanger), member 4	protein-coding	1.16758163236849	0.804909102454087	0.775913513615716	0.752441024373613	1.86413927995804	2.68672136000305	0.782441047444031	2.61819999604864	4.26247728321983	0.00348145620881067	0.0505696266262838
Merged-chr4-86875800-1	chr4	86875700	86875900	+	1000.0	f1_c57bl6.idr	intron (NM_001290543, intron 1 of 5)	intron (NM_001290543, intron 1 of 5)	1386.0	NM_139306	230379.0	Mm.45019	NM_139306	ENSMUSG00000038007	Acer2	2410116I05Rik|Asah3l|CRG-L1|maCER2	alkaline ceramidase 2	protein-coding	1.89930253832821	2.34775550136686	0.983997327922284	1.68246834057868	0.939704805829388	1.95217698784866	0.989039857815133	1.92586238224137	-0.763950301895182	0.549409247924836	0.958850792269644
Merged-chr1-74376470-8	chr1	74376328	74376528	+	980.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013612, intron 2 of 14)	intron (NM_013612, intron 2 of 14)	1225.0	NM_013612	18173.0	Mm.2913	NM_013612	ENSMUSG00000026177	Slc11a1	Bcg|Ity|Ity1|Lsh|Nramp|Nramp1|ity	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34256939-2	chr17	34256844	34257044	+	769.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6283.0	NM_207105	14961.0	Mm.254067	NM_207105	ENSMUSG00000073421	H2-Ab1	AI845868|Abeta|H-2Ab|H2-Ab|I-Abeta|IAb|Ia-2|Ia2|Rmcs1	histocompatibility 2, class II antigen A, beta 1	protein-coding	-0.289851946104314	-0.737899168765768	-0.740932179010924	-0.743264539078787	-0.280173431323445	-0.737213951634147	-0.740264187498491	-0.742857569821679	0.0418983010157508	0.98887086484455	1
Merged-chr4-134748933-2	chr4	134748833	134749033	+	786.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145554, intron 7 of 8)	intron (NM_145554, intron 7 of 8)	19071.0	NM_145554	100017.0	Mm.27486	NM_145554	ENSMUSG00000037295	Ldlrap1	AA691260|ARH2|Arh|Arh1|FHCB1|FHCB2	low density lipoprotein receptor adaptor protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-170286179-1	chr1	170286079	170286279	+	655.0	f0_balb.idr	non-coding (NR_153837, exon 3 of 3)	non-coding (NR_153837, exon 3 of 3)	8861.0	NR_153837	26904.0	Mm.57009	NM_012009	ENSMUSG00000102418	Sh2d1b1	EAT-2|EAT-2A|Eat2|Eat2a|Sh2d1b	SH2 domain containing 1B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-91534721-2	chr17	91534621	91534821	+	570.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17B|LTR|ERVK	-441919.0	NM_020252	18189.0	Mm.478418	NM_020252	ENSMUSG00000024109	Nrxn1	1700062G21Rik|9330127H16Rik|A230068P09Rik|mKIAA0578	neurexin I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94640659-2	chr10	94640559	94640759	+	673.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47954.0	NR_015524	67723.0	Mm.116284	NR_015524		Cep83os	4932415G12Rik|Ccdc41os1	centrosomal protein 83, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-40489249-3	chr10	40489138	40489338	+	865.2777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-81124.0	NM_027572	70840.0	Mm.332570	NM_027572	ENSMUSG00000019834	Slc22a16	4921504E14Rik|CT2|FLIPT2|OCT6|OKB1	solute carrier family 22 (organic cation transporter), member 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-130789938-4	chr4	130789825	130790025	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-2612.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-41375769-1	chr2	41375669	41375869	+	540.0	f1_balb.idr	intron (NM_053011, intron 21 of 90)	intron (NM_053011, intron 21 of 90)	1071799.0	NR_105754	102465171.0		NR_105754	ENSMUSG00000098660	Mir6336	Gm27584|mmu-mir-6336	microRNA 6336	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65580227-4	chr9	65580122	65580322	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153119)	promoter-TSS (NM_153119)	-135.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45155099-4	chr7	45155014	45155214	+	999.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285904)	promoter-TSS (NM_001285904)	-576.0	NM_145954	69748.0	Mm.82139	NM_145954	ENSMUSG00000007833	Aldh16a1	2410004H02Rik|AI452234|mFLJ00209	aldehyde dehydrogenase 16 family, member A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31336568-4	chr14	31336441	31336641	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360187)	promoter-TSS (NM_001360187)	-97.0	NM_001360187	12339.0	Mm.201535	NM_009796	ENSMUSG00000021893	Capn7	AU022319|PalBH	calpain 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-36729163-2	chr16	36729063	36729263	+	730.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	35185.0	NM_001285791	106347.0	Mm.17807	NM_134109	ENSMUSG00000022900	Ildr1	AU041483|AU044638	immunoglobulin-like domain containing receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167922051-4	chr2	167921960	167922160	+	979.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10267.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-60843945-4	chr18	60843843	60844043	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011552, intron 2 of 24)	intron (NM_011552, intron 2 of 24)	5021.0	NM_011552	21453.0	Mm.486251	NM_011552	ENSMUSG00000024613	Tcof1	AA408847|AW209012|treacle	treacle ribosome biogenesis factor 1	protein-coding	5.38169227308592	5.42951251382735	4.47378939639499	5.20586073393215	5.30367817581353	5.01246372126561	4.98687544837478	5.34440947924092	0.00317576058935741	0.992084993792476	0.998431161219273
Merged-chr10-81421146-2	chr10	81421046	81421246	+	755.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026756, intron 1 of 8)	intron (NM_026756, intron 1 of 8)	-4849.0	NR_106141	102465778.0		NR_106141	ENSMUSG00000105379	Mir1191b	mmu-mir-1191b	microRNA 1191b	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-135794660-2	chr1	135794560	135794760	+	637.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-4761.0	NM_021467	21952.0	Mm.44379	NM_021467	ENSMUSG00000026418	Tnni1	2700018B22Rik|AI747285|ssTnI	troponin I, skeletal, slow 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-155488921-4	chr4	155488828	155489028	+	964.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2433.0	NM_001160017	14688.0	Mm.2344	NM_008142	ENSMUSG00000029064	Gnb1	AA409223|C77571|Gnb-1	guanine nucleotide binding protein (G protein), beta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-118847138-4	chr12	118847049	118847249	+	671.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177082, intron 1 of 2)	CpG	820.0	NM_177082	320145.0	Mm.51682	NM_177082	ENSMUSG00000048562	Sp8	D930049B17Rik|mBtd	trans-acting transcription factor 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-105811138-4	chr7	105811040	105811240	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025301)	promoter-TSS (NM_025301)	-53.0	NM_025301	27397.0	Mm.44225	NM_025301	ENSMUSG00000030879	Mrpl17	MRP-L26|Rpml26	mitochondrial ribosomal protein L17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-110971473-3	chr8	110971329	110971529	+	780.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009179, exon 7 of 7)	3' UTR (NM_009179, exon 7 of 7)	26394.0	NM_007916	13680.0	Mm.287901	NM_007916	ENSMUSG00000015023	Ddx19a	DBP5|Ddx19|Eif4a-rs1	DEAD (Asp-Glu-Ala-Asp) box polypeptide 19a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128792250-2	chr2	128792150	128792350	+	895.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 16 of 18)	intron (NM_008587, intron 16 of 18)	-26053.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	-0.194701370814297	-0.180648692824825	-0.185259142625748	0.11042750407767	0.28001800906604	0.435299183164527	-0.184242835790663	-0.188191447965731	2.02201112634185	0.40130896390679	1
Merged-chr19-6300548-3	chr19	6300458	6300658	+	965.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010119)	TTS (NM_010119)	-5899.0	NM_001033342	240505.0	Mm.329622	NM_001033342	ENSMUSG00000024769	Cdc42bpg	BC046418|MRCKgamma	CDC42 binding protein kinase gamma (DMPK-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34931241-4	chr17	34931141	34931341	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010893)	promoter-TSS (NM_010893)	-12.0	NM_010893	18010.0	Mm.8856	NM_010893	ENSMUSG00000007038	Neu1	AA407268|AA407316|Aglp|Apl|Bat-7|Bat7|G9|Map-2|Neu|Neu-1	neuraminidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-18877125-4	chr16	18877014	18877214	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010922)	promoter-TSS (NM_010922)	364.0	NM_010435	15260.0	Mm.15694	NM_010435	ENSMUSG00000022702	Hira	AA138857|D16Ertd95e|Gm15797|N28177|Tuple1	histone cell cycle regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-66930164-4	chr10	66930058	66930258	+	917.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-9774.0	NR_138561	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-129766631-1	chr7	129766531	129766731	+	609.5	f0_balb.idr	Intergenic	Intergenic	174768.0	NM_172255	207425.0	Mm.229323	NM_172255	ENSMUSG00000042055	Wdr11	2900055P10Rik|AW489876|Brwd2|mKIAA1351	WD repeat domain 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-79324292-2	chr15	79324159	79324359	+	951.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016915, intron 1 of 15)	intron (NM_016915, intron 1 of 15)	4112.0	NM_016915	53357.0	Mm.155620	NM_016915	ENSMUSG00000042632	Pla2g6	BB112799|PNPLA9|iPLA(2)beta|iPLA2|iPLA2beta	phospholipase A2, group VI	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-12010506-4	chr19	12010400	12010600	+	993.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26240.0	NM_146680	258675.0	Mm.271517	NM_146680	ENSMUSG00000067529	Olfr1423	MOR239-3	olfactory receptor 1423	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-8948968-2	chr19	8948868	8949068	+	709.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_011842, exon 14 of 18)	exon (NM_011842, exon 14 of 18)	-4864.0	NM_197993	70044.0	Mm.165979	NM_197993	ENSMUSG00000071645	Tut1	2700038E08Rik|PAPD2|Rbm21|TUTase6|U6-TUTase|star-PAP	terminal uridylyl transferase 1, U6 snRNA-specific	protein-coding	-0.886101355436339	-1.00396555740196	-1.0149952784261	-0.729136405357512	-1.02076976304248	-1.00157537084445	-1.01249839135084	-0.724971213481921	-0.412084047333427	0.891480597011167	1
Merged-chr7-96524025-1	chr7	96523925	96524125	+	940.0	f0_balb.idr	intron (NM_001310762, intron 4 of 32)	intron (NM_001310762, intron 4 of 32)	-182061.0	NR_046043	670727.0	Mm.421352	NR_046043	ENSMUSG00000085751	Gm15412	-	predicted gene 15412	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-50857132-2	chr15	50857032	50857232	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_032000, intron 1 of 5)	intron (NM_032000, intron 1 of 5)	31917.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76927861-2	chr15	76927761	76927961	+	834.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-2413.0	NM_001168276	239546.0	Mm.183650	NM_172817	ENSMUSG00000054967	Zfp647	6030449J21|Es492|Znf250	zinc finger protein 647	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16263554-10	chr7	16263468	16263668	+	896.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-4028.0	NM_007577	12273.0	Mm.247623	NM_007577	ENSMUSG00000049130	C5ar1	C5aR|C5r1|Cd88|D7Msu1	complement component 5a receptor 1	protein-coding	2.85539745339054	3.79441590772223	2.87266894217463	3.20274293224901	3.06368529536443	3.88517764380127	2.76208729544691	3.45733484275597	0.198798425067241	0.746808482050887	0.998431161219273
Merged-chr16-74567578-2	chr16	74567478	74567678	+	906.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358493, intron 1 of 28)	Lx|LINE|L1	-155753.0	NM_175549	268902.0	Mm.171736	NM_175549	ENSMUSG00000052516	Robo2	2600013A04Rik|9430089E08Rik|BB097918|D230004I22Rik|mKIAA1568	roundabout guidance receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-120935242-4	chr9	120935142	120935342	+	948.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007614, intron 1 of 14)	intron (NM_007614, intron 1 of 14)	1664.0	NM_001165902	12387.0	Mm.291928	NM_007614	ENSMUSG00000006932	Ctnnb1	Bfc|Catnb|Mesc	catenin (cadherin associated protein), beta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-83485981-3	chr12	83485896	83486096	+	800.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_058212, intron 1 of 8)	CpG	1740.0	NM_001267626	70127.0	Mm.151308	NM_058212	ENSMUSG00000021221	Dpf3	2810403B03Rik|6530402L11Rik|BAF45C|C78788|CERD4|cer-d4	D4, zinc and double PHD fingers, family 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166715949-2	chr2	166715849	166716049	+	591.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2117.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-37994825-4	chr16	37994720	37994920	+	811.174988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153394, intron 8 of 9)	intron (NM_153394, intron 8 of 9)	-22503.0	NR_040565	75175.0	Mm.399335	NR_040565		4930542C21Rik	-	RIKEN cDNA 4930542C21 gene	ncRNA	4.17063100669607	3.84029882714656	4.06896341536109	3.82883806489879	4.11182967497528	4.7475628957313	4.16052669242327	3.00772241804671	0.200714672290238	0.682108750393918	0.995882295196263
Merged-chr10-80316253-2	chr10	80316153	80316353	+	600.25	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011789, exon 14 of 14)	3' UTR (NM_011789, exon 14 of 14)	4295.0	NM_025521	66374.0	Mm.383824	NM_025521	ENSMUSG00000020133	2310011J03Rik	AI452186|AW545358	RIKEN cDNA 2310011J03 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-5443618-2	chr11	5443518	5443718	+	759.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080924, intron 1 of 8)	intron (NM_001080924, intron 1 of 8)	1229.0	NM_001080924	407821.0	Mm.216313	NM_001080924	ENSMUSG00000041961	Znrf3	Gm1167	zinc and ring finger 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6967830-2	chr19	6967730	6967930	+	685.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290349, intron 1 of 30)	intron (NM_001290349, intron 1 of 30)	1984.0	NM_008874	18797.0	Mm.273204	NM_008874	ENSMUSG00000024960	Plcb3	mKIAA4098	phospholipase C, beta 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-109394072-2	chr12	109393972	109394172	+	810.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58751.0	NR_033813	13386.0	Mm.157069	NM_010052	ENSMUSG00000040856	Dlk1	AW742678|DLK-1|DlkI|FA1|Ly107|Peg9|SCP1|ZOG|pG2|pref-1	delta like non-canonical Notch ligand 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-73595389-4	chr7	73595303	73595503	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37008.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	4.54539829176475	3.31258854513343	4.41357381457564	3.73468735044352	3.70672573470573	3.66331512839478	4.13219968838531	3.67976845169065	-0.410026403924831	0.403229792713781	0.888785587454204
Merged-chr12-34907175-2	chr12	34907075	34907275	+	582.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271386, intron 2 of 27)	CpG	9920.0	NM_001271386	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75173640-4	chr11	75173537	75173737	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029546)	promoter-TSS (NR_029546)	-45.0	NR_029546	387150.0		NR_029546	ENSMUSG00000065537	Mir132	Mirn132|mir-132|mmu-mir-132	microRNA 132	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-60719234-2	chr13	60719134	60719334	+	650.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 7 of 26)	B4A|SINE|B4	67130.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-104534972-4	chr8	104534841	104535041	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144931)	promoter-TSS (NM_144931)	241.0	NM_001301164	12354.0	Mm.129265	NM_053070	ENSMUSG00000031883	Car7	AV343731|Ca7	carbonic anhydrase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-6569276-2	chr2	6569176	6569376	+	556.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110232, intron 11 of 15)	intron (NM_001110232, intron 11 of 15)	152386.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-80087051-1	chr2	80086951	80087151	+	542.0	f1_balb.idr	intron (NM_001355141, intron 2 of 15)	intron (NM_001355141, intron 2 of 15)	41920.0	NM_016744	18573.0	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding	-1.58994551673671	-1.55912852307891	-1.56844783632235	-1.57610299769523	-1.18549093183599	-1.55710898902261	-1.56633814807757	-1.57473272746952	1.78703309985663	0.610309988231842	1
Merged-chr17-15375935-3	chr17	15375795	15375995	+	847.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007865)	promoter-TSS (NM_007865)	-72.0	NM_007865	13388.0	Mm.4875	NM_007865	ENSMUSG00000014773	Dll1	Delta1	delta like canonical Notch ligand 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-20185307-4	chr13	20185189	20185389	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	94782.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	3.08501657116251	2.49897283434213	3.26823953994632	3.60970019054793	2.0747027644696	1.60373195590469	3.03785822865581	3.19341324635754	-0.940092454643114	0.221791319393201	0.713546366664184
Merged-chr3-156563270-1	chr3	156563170	156563370	+	642.0	f0_c57.idr	intron (NM_001039094, intron 1 of 6)	intron (NM_001039094, intron 1 of 6)	1476.0	NM_001039094	320840.0	Mm.317293	NM_177274	ENSMUSG00000040037	Negr1	5330422G01Rik|KILON|Ntra	neuronal growth regulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-7268134-4	chr19	7268010	7268210	+	940.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001320554)	promoter-TSS (NM_001320554)	-169.0	NM_001320554	104383.0	Mm.283859	NM_054048	ENSMUSG00000024968	Rcor2	1A13|AW122124|CoREST|Rcor|Rcor1	REST corepressor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-81987147-4	chr6	81987062	81987262	+	999.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MamGypLTR3|LTR|Gypsy	-21213.0	NM_026490	56284.0	Mm.276293	NM_026490	ENSMUSG00000030045	Mrpl19	9030416F12Rik|9130412E02Rik|D6Ertd157e|MRP-L15|RLX1|Rpml15	mitochondrial ribosomal protein L19	protein-coding	3.78983030386693	3.54336745892727	3.42422199521464	3.83378785135622	3.77348851091413	1.99659442098794	1.62945907158662	2.97903574612498	-1.20522386097684	0.0939663643644231	0.475165119265671
Merged-chr19-41764521-2	chr19	41764433	41764633	+	728.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	17572.0	NR_040320	100502871.0	Mm.394485	NR_040320		Gm19424	-	predicted gene, 19424	ncRNA	-0.181270591326656	-0.159145419084647	0.97051077316373	0.45367404937878	-0.179861897203682	-0.157547075113333	-0.164708566635307	-0.170894518408451	-4.15536750453737	0.0729681630268767	1
Merged-chr7-90146510-4	chr7	90146408	90146608	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360867, intron 1 of 19)	intron (NM_001360867, intron 1 of 19)	16295.0	NM_001252520	233489.0	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152512583-2	chr1	152512483	152512683	+	742.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13A2|LTR|ERVK	112634.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-9118756-4	chr15	9118672	9118872	+	963.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013787, intron 7 of 9)	L2|LINE|L2	21682.0	NM_013787	27401.0	Mm.35584	NM_013787	ENSMUSG00000054115	Skp2	4930500A04Rik|FBXL1|FWD1|p45	S-phase kinase-associated protein 2 (p45)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-65700433-2	chr18	65700333	65700533	+	769.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177028, intron 1 of 14)	Lx9|LINE|L1	2165.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44410204-2	chr7	44410104	44410304	+	607.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26078.0	NM_016663	20981.0	Mm.4824	NM_016663	ENSMUSG00000030731	Syt3	AI385753|sytIII	synaptotagmin III	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102524402-4	chr12	102524295	102524495	+	894.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30546.0	NM_007693	12652.0	Mm.4137	NM_007693	ENSMUSG00000021194	Chga	ChrA|cgA	chromogranin A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-62129985-2	chr15	62129885	62130085	+	784.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_132746, intron 2 of 6)	intron (NR_132746, intron 2 of 6)	89466.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97814403-4	chr6	97814303	97814503	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113198, intron 1 of 9)	intron (NM_001113198, intron 1 of 9)	7345.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-36447151-4	chr3	36447049	36447249	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28375.0	NR_105976	102466786.0		NR_105976	ENSMUSG00000098808	Mir7009	Gm27472|mmu-mir-7009	microRNA 7009	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-98274048-4	chr12	98273935	98274135	+	864.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008152, intron 1 of 1)	intron (NM_008152, intron 1 of 1)	5400.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-105296349-3	chr14	105296251	105296451	+	885.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029561, intron 4 of 7)	intron (NM_029561, intron 4 of 7)	37678.0	NM_001190989	76273.0	Mm.290669	NM_029561	ENSMUSG00000053253	Ndfip2	0710001O20Rik|2810436B12Rik|9130207N19Rik|N4wbp5a|mKIAA1165	Nedd4 family interacting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-90574991-2	chr3	90574891	90575091	+	718.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9668.0	NM_001355597	20197.0	Mm.440044	NM_011310	ENSMUSG00000001021	S100a3	S100E	S100 calcium binding protein A3	protein-coding	2.00160922795498	1.04852786665405	1.0268720762246	2.11983615105643	1.62824336468274	1.05331596070712	2.01157609534023	2.13180466628714	0.309797837827035	0.805387725537651	0.998431161219273
Merged-chr12-81719901-4	chr12	81719780	81719980	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001174107, exon 11 of 11)	3' UTR (NM_001174107, exon 11 of 11)	61290.0	NM_177395	338372.0	Mm.35284	NM_177395	ENSMUSG00000042724	Map3k9	E130314H24Rik|Mlk1|Prke1	mitogen-activated protein kinase kinase kinase 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-87028962-3	chr1	87028829	87029029	+	789.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001172157, intron 15 of 21)	intron (NM_001172157, intron 15 of 21)	60999.0	NM_007433	11650.0	Mm.195224	NM_007433	ENSMUSG00000026246	Alppl2	Akp5|C77216|D1Ertd816e|EAP	alkaline phosphatase, placental-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-94358986-2	chr8	94358886	94359086	+	588.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019415, intron 24 of 24)	intron (NM_019415, intron 24 of 24)	-27443.0	NM_001357205	64209.0	Mm.29151	NM_022331	ENSMUSG00000031770	Herpud1	Herp|Mifl|SUP	homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-40947413-2	chr4	40947313	40947513	+	968.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001171739, intron 1 of 6)	intron (NM_001171739, intron 1 of 6)	881.0	NM_009736	12017.0	Mm.688	NM_009736	ENSMUSG00000028416	Bag1	BAG-1|Rap46	BCL2-associated athanogene 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-143711532-2	chr5	143711432	143711632	+	856.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_029749, intron 17 of 17)	intron (NM_029749, intron 17 of 17)	20748.0	NM_029749	76800.0	Mm.259620	NM_029749	ENSMUSG00000051306	Usp42	2410140K03Rik|3110031A07Rik|A630018G05Rik|D5Ertd591e	ubiquitin specific peptidase 42	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-148303173-2	chr5	148303073	148303273	+	622.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359505, intron 6 of 8)	Lx9|LINE|L1	37956.0	NM_001359505	77521.0	Mm.244177	NM_029920	ENSMUSG00000029651	Mtus2	5730592G18Rik|A730013O20Rik|AU067634|C130038G02Rik|Cazip|Gm763|mKIAA0774	microtubule associated tumor suppressor candidate 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-103805857-2	chr3	103805757	103805957	+	720.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_040412, intron 4 of 4)	intron (NR_040412, intron 4 of 4)	2728.0	NR_040412	100503157.0	Mm.445554	NR_040412	ENSMUSG00000084997	Gm15471	-	predicted gene 15471	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-21034211-4	chr11	21034063	21034263	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57161.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-61373866-2	chr1	61373766	61373966	+	631.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4566.0	NR_040483	77341.0	Mm.402964	NR_040483	ENSMUSG00000085447	9530026F06Rik	-	RIKEN cDNA 9530026F06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-62834197-2	chr4	62834097	62834297	+	680.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11B|LTR|ERVK	-131377.0	NM_028326	72701.0	Mm.26479	NM_028326	ENSMUSG00000028358	Zfp618	2810031P15Rik|2810040O04Rik|AI415580|AI505139|D430033D05Rik|Nedd10|Znf618|bM257P7.1	zinc finger protein 618	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-130782687-4	chr4	130782579	130782779	+	942.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9858.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88174102-2	chr3	88174002	88174202	+	962.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045997, intron 2 of 2)	intron (NR_045997, intron 2 of 2)	3683.0	NR_045997	76642.0	Mm.424420	NR_045997	ENSMUSG00000096935	1700113A16Rik	2210408E11Rik|AA408983	RIKEN cDNA 1700113A16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-18610061-4	chr12	18609955	18610155	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	95545.0	NM_001201330	236366.0	Mm.352227	NM_001033157	ENSMUSG00000073197	5730507C01Rik	-	RIKEN cDNA 5730507C01 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-31209602-4	chr6	31209517	31209717	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110469, intron 1 of 3)	intron (NR_110469, intron 1 of 3)	8857.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-88177336-2	chr18	88177236	88177436	+	594.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	716871.0	NM_018821	54607.0	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-18036091-4	chr5	18036007	18036207	+	997.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MCa|LINE|L1	73537.0	NM_001081143	242851.0	Mm.332230	NM_001081143	ENSMUSG00000028777	Gnat3	Ggust|Gtn	guanine nucleotide binding protein, alpha transducing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-90759493-1	chr5	90759393	90759593	+	667.0	f0_balb.idr	exon (NM_009141, exon 1 of 4)	exon (NM_009141, exon 1 of 4)	195.0	NM_009141	20311.0	Mm.4660	NM_009141	ENSMUSG00000029371	Cxcl5	AMCF-II|Cxcl6|ENA-78|GCP-2|LIX|Scyb5|Scyb6	chemokine (C-X-C motif) ligand 5	protein-coding	-0.212503058534317	-0.192865602695388	0.741607689050372	-0.204189662997572	-0.211259393267337	0.506225403764261	-0.197823859836013	-0.203321115791023	-0.618070881669346	0.801252394704813	1
Merged-chr13-21168889-3	chr13	21168793	21168993	+	798.196289	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11038.0	NM_009054	19720.0	Mm.314056	NM_009054	ENSMUSG00000021326	Trim27	AW538890|Gm19403|Rfp	tripartite motif-containing 27	protein-coding	1.71493058066499	1.00598960114499	1.37388964461354	1.60396551042972	1.96636670037535	1.00961174104473	1.66535446916294	1.61243641013259	0.53547334159659	0.662582763273652	0.991056031673253
Merged-chr11-82959708-3	chr11	82959567	82959767	+	786.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183201, intron 4 of 5)	RLTR30|LTR|ERV1	1014.0	NR_045932	76392.0	Mm.295205	NR_045932	ENSMUSG00000086327	Slfn5os	1700003F17Rik	schlafen 5, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-102896001-4	chr13	102895896	102896096	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175171, intron 4 of 28)	intron (NM_175171, intron 4 of 28)	135741.0	NR_130171	76624.0	Mm.426384	NR_130171	ENSMUSG00000091906	1700099I09Rik	-	RIKEN cDNA 1700099I09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-43681178-4	chr7	43681077	43681277	+	854.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9146.0	NM_145582	233189.0	Mm.26514	NM_145582	ENSMUSG00000038888	Ctu1	Atpbd3|BC005752	cytosolic thiouridylase subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-150833707-2	chr2	150833607	150833807	+	762.333374	f1_balb.idr|f1_c57bl6.idr	intron (NR_151505, intron 12 of 12)	intron (NR_151505, intron 12 of 12)	8863.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-35480994-1	chr12	35480894	35481094	+	796.666687	f1_c57bl6.idr	Intergenic	Intergenic	53995.0	NM_013464	11622.0	Mm.341377	NM_013464	ENSMUSG00000019256	Ahr	Ah|Ahh|Ahre|In|bHLHe76	aryl-hydrocarbon receptor	protein-coding	2.35907192862717	2.85452762696756	3.01503605154732	2.32189410754018	0.922919130973844	1.04140906985022	1.00528249028485	0.972718516297319	-5.96359074778087	3.1971904289016e-06	0.000173836362987741
Merged-chr11-98817704-2	chr11	98817604	98817804	+	606.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_138660, intron 3 of 13)	intron (NM_138660, intron 3 of 13)	-7615.0	NR_033551	100037262.0	Mm.442062	NR_033551	ENSMUSG00000075576	Gm12359	-	predicted gene 12359	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-13361401-4	chr14	13361317	13361517	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028052, intron 2 of 5)	intron (NM_028052, intron 2 of 5)	76637.0	NM_028052	72003.0	Mm.317515	NM_028052	ENSMUSG00000056296	Synpr	1500003F20Rik|SPO	synaptoporin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-11093501-4	chr19	11093406	11093606	+	776.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12403.0	NM_022430	64381.0	Mm.34460	NM_022430	ENSMUSG00000024730	Ms4a8a	2010004L09Rik|AI481240|CD20L5|Ms4a8	membrane-spanning 4-domains, subfamily A, member 8A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191068600-4	chr1	191068483	191068683	+	899.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198654, intron 2 of 5)	intron (NM_198654, intron 2 of 5)	5562.0	NM_198654	381318.0	Mm.32504	NM_198654	ENSMUSG00000062510	Nsl1	4833432M17Rik|AI451597|Gm105|Gm984	NSL1, MIS12 kinetochore complex component	protein-coding	0.749645307751203	0.697253964762008	0.956667761917016	0.921317166183753	1.291872479243	0.501610047719727	0.493430327186664	0.657609792810537	-0.180805307481948	0.909427207476463	1
Merged-chr12-80758405-3	chr12	80758336	80758536	+	892.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001008423, exon 2 of 2)	exon (NM_001008423, exon 2 of 2)	2279.0	NM_001008423	380768.0	Mm.29367	NM_001008423	ENSMUSG00000062961	Ccdc177	Gm1568	coiled-coil domain containing 177	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133586761-3	chr4	133586639	133586839	+	881.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290742, intron 2 of 4)	intron (NM_001290742, intron 2 of 4)	2366.0	NM_133884	100210.0	Mm.274001	NM_133884	ENSMUSG00000028848	Gpn2	AI838661|Atpbd1b|R74630	GPN-loop GTPase 2	protein-coding	-0.133965025922835	-0.56758710011108	-0.570766776447001	-0.419109298363509	-0.576640745782133	-0.56686799526682	-0.570066949197028	-0.167404803900249	-0.517394811566961	0.847685802951698	1
Merged-chr6-29206340-2	chr6	29206240	29206440	+	561.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_011829, exon 5 of 14)	exon (NM_011829, exon 5 of 14)	5957.0	NM_011829	23917.0	Mm.260707	NM_011829	ENSMUSG00000003500	Impdh1	B930086D20Rik|IMPDH-I	inosine monophosphate dehydrogenase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70781316-4	chr14	70781212	70781412	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6931.0	NM_010071	13449.0	Mm.243323	NM_010071	ENSMUSG00000022102	Dok2	DokR|Frip|dok-R	docking protein 2	protein-coding	4.7034133058637	4.68866704830275	5.37044810483868	4.61103923142661	4.55037540629174	4.35815503855716	5.5388685029685	4.95221203468387	0.0594980850665192	0.874919794259879	0.998431161219273
Merged-chr6-83650639-3	chr6	83650517	83650717	+	953.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016751, intron 4 of 6)	intron (NM_016751, intron 4 of 6)	5499.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-20943612-2	chr9	20943512	20943712	+	763.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199432, intron 1 of 38)	intron (NM_001199432, intron 1 of 38)	9011.0	NM_001199433	13433.0	Mm.128580	NM_010066	ENSMUSG00000004099	Dnmt1	Cxxc9|Dnmt|Dnmt1o|MCMT|MTase|Met-1|Met1|MommeD2|m.MmuI	DNA methyltransferase (cytosine-5) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-20522669-1	chr15	20522569	20522769	+	750.0	f1_balb.idr	Intergenic	Lx3_Mus|LINE|L1	144081.0	NM_022816	64833.0	Mm.352763	NM_022816	ENSMUSG00000047565	Acot10	Acate3|MT-ACT48|p48	acyl-CoA thioesterase 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-73747752-2	chr13	73747652	73747852	+	581.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	-15908.0	NM_001360694	20499.0	Mm.275800	NM_011390	ENSMUSG00000017756	Slc12a7	AA408796|D13Ertd261e|Kcc4	solute carrier family 12, member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-53284622-4	chr19	53284515	53284715	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25891.0	NM_001008542	17859.0	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	4.63060253592248	5.31190374640244	5.28378301194581	4.92947046188498	4.58941474955327	5.31162235205115	3.81701733380273	4.87897628106066	-0.378793558731019	0.319046558122718	0.821951596143819
Merged-chr5-112344947-2	chr5	112344847	112345047	+	675.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_138646, exon 2 of 14)	5' UTR (NM_138646, exon 2 of 14)	1852.0	NM_138646	192232.0	Mm.238043	NM_138646	ENSMUSG00000042328	Hps4	2010205O06Rik|AU040608|BLOC-3|C130020P05Rik|le|mKIAA1667	HPS4, biogenesis of lysosomal organelles complex 3 subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-56573646-3	chr18	56573547	56573747	+	874.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001127338)	promoter-TSS (NM_001127338)	-708.0	NM_001127338	110695.0	Mm.30250	NM_138600	ENSMUSG00000053644	Aldh7a1	Atq1|D18Wsu181e	aldehyde dehydrogenase family 7, member A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-34871715-3	chr13	34871594	34871794	+	677.477783	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3800.0	NM_013830	19134.0	Mm.10027	NM_013830	ENSMUSG00000021413	Prpf4b	2610037H07|Prp4|Prp4k|Prpk|cbp143	pre-mRNA processing factor 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-138246064-4	chr2	138245974	138246174	+	927.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16C|LTR|ERVL	-10510.0	NM_001025431	228662.0	Mm.153405	NM_145534	ENSMUSG00000062098	Btbd3	mKIAA0952	BTB (POZ) domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-85633839-2	chr17	85633739	85633939	+	786.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13005.0	NM_011381	20473.0	Mm.370208	NM_011381	ENSMUSG00000038805	Six3	E130112M24Rik|Six3a|Six3alpha|Six3b|Six3beta	sine oculis-related homeobox 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-30583487-2	chr13	30583387	30583587	+	771.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31556.0	NR_045975	75090.0	Mm.292232	NR_045975	ENSMUSG00000086263	4930519D14Rik	-	RIKEN cDNA 4930519D14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-38511899-4	chr2	38511851	38512051	+	972.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159631)	promoter-TSS (NM_001159631)	75.0	NM_001159631	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131069132-2	chr1	131069031	131069231	+	666.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008551, intron 1 of 9)	RMER6-int|LTR|ERVK	28712.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	-1.20406370813143	-1.56956373024278	-1.57884638916872	-1.58647144159385	-1.598104728449	-1.56755213932999	-1.57674499865798	-1.58510656085539	-1.70745470802464	0.626337835847419	1
Merged-chr14-122061442-2	chr14	122061342	122061542	+	565.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	26768.0	NM_001037744	223262.0	Mm.297637	NM_001037744	ENSMUSG00000071229	Timm8a2	-	translocase of inner mitochondrial membrane 8A2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-82464814-4	chr18	82464664	82464864	+	901.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-10359.0	NM_001025245	17196.0	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-75459579-3	chr18	75459431	75459631	+	814.361145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201354, intron 10 of 11)	intron (NM_201354, intron 10 of 11)	-55114.0	NR_045879	100038353.0	Mm.440724	NR_045879	ENSMUSG00000097712	Gm10532	-	predicted gene 10532	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-29224822-2	chr7	29224722	29224922	+	676.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001033525, exon 3 of 3)	3' UTR (NM_001033525, exon 3 of 3)	7700.0	NM_001033525	52150.0	Mm.24877	NM_001033525	ENSMUSG00000046410	Kcnk6	D7Ertd764e|Toss|Twik2	potassium inwardly-rectifying channel, subfamily K, member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-18234112-4	chr14	18234014	18234214	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011584, intron 1 of 7)	intron (NM_011584, intron 1 of 7)	4992.0	NM_011584	353187.0	Mm.26587	NM_011584	ENSMUSG00000021775	Nr1d2	RVR|Rev-erb	nuclear receptor subfamily 1, group D, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-54474604-2	chr1	54474504	54474704	+	874.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001163314, exon 27 of 27)	3' UTR (NM_001163314, exon 27 of 27)	-35578.0	NM_001033194	98488.0	Mm.25856	NM_001033194	ENSMUSG00000041303	Gtf3c3	TF3C-gamma|TFIIIC102	general transcription factor IIIC, polypeptide 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10204756-4	chr19	10204693	10204893	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271615)	promoter-TSS (NM_001271615)	591.0	NM_026919	69038.0	Mm.375100	NM_026919	ENSMUSG00000036372	Tmem258	1810006K21Rik	transmembrane protein 258	protein-coding	4.972687644194	4.59513049096533	4.33706929815338	4.09683423324454	4.51532959058556	4.45192190477695	5.14707026633006	4.94496049260394	0.309339163777105	0.416237110411729	0.897020629395269
Merged-chr15-95876153-2	chr15	95876053	95876253	+	554.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 2 of 19)	intron (NM_175344, intron 2 of 19)	-46081.0	NR_155276	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124743917-2	chr6	124743817	124744017	+	622.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007881, intron 7 of 9)	intron (NM_007881, intron 7 of 9)	-2838.0	NM_013535	14790.0	Mm.439877	NM_013535	ENSMUSG00000072772	Grcc10	2310033H05Rik|C10	gene rich cluster, C10 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-31115075-4	chr6	31114967	31115167	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110471, intron 3 of 3)	intron (NR_110471, intron 3 of 3)	-51974.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127114539-4	chr10	127114446	127114646	+	943.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177614, intron 5 of 13)	intron (NM_177614, intron 5 of 13)	6614.0	NM_177614	216440.0	Mm.295246	NM_177614	ENSMUSG00000040462	Os9	4632413K17Rik|AU022351	amplified in osteosarcoma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123866653-4	chr5	123866556	123866756	+	745.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1140.0	NM_030701	80885.0	Mm.440567	NM_030701	ENSMUSG00000045502	Hcar2	Gpr109a|Gpr109b|HM74|Niacr1|PUMA-G|Pumag|mHM74b	hydroxycarboxylic acid receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-69203003-2	chr17	69202903	69203103	+	809.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355736, intron 1 of 21)	intron (NM_001355736, intron 1 of 21)	43647.0	NM_001355735	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-41463105-3	chr3	41463032	41463232	+	690.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30067.0	NR_040385	78706.0	Mm.366094	NR_040385	ENSMUSG00000097639	Platr4	C430002E04Rik	pluripotency associated transcript 4	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-20293016-2	chr13	20292916	20293116	+	757.56665	f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 13 of 21)	intron (NM_080288, intron 13 of 21)	-179974.0	NM_198093	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	3.54333331779189	2.04177763862048	1.45484641433884	2.53427966753535	2.52857197637671	2.26255038845278	3.42569137917734	3.25800295900014	0.541705919685018	0.525919997714894	0.948584451945851
Merged-chr13-118460230-1	chr13	118460130	118460330	+	608.0	f1_balb.idr	Intergenic	MamSINE1|SINE|tRNA	-72978.0	NM_021556	59054.0	Mm.143810	NM_021556	ENSMUSG00000021731	Mrps30	2610020A16Rik|AA968347|PAP|Pdcd9	mitochondrial ribosomal protein S30	protein-coding	0.434094218744122	0.489481518941563	0.472031981375603	1.88002177714456	0.43774896732383	0.493331021595929	1.12385073009368	1.96229592521276	0.507655382210389	0.876939692769104	0.998431161219273
Merged-chr3-88141550-2	chr3	88141450	88141650	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133665)	promoter-TSS (NM_133665)	-822.0	NM_001310593	17261.0	Mm.28184	NM_133665	ENSMUSG00000001419	Mef2d	C80750	myocyte enhancer factor 2D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165987453-4	chr2	165987345	165987545	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5192.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91466765-3	chr16	91466642	91466842	+	977.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_077219, intron 1 of 1)	intron (NR_077219, intron 1 of 1)	1638.0	NR_077219	100503120.0	Mm.387130	NR_077219	ENSMUSG00000084866	A930006K02Rik	-	RIKEN cDNA A930006K02 gene	ncRNA	3.88101756193449	3.71749711346819	3.3164212171797	2.96337458040104	1.8843766709856	2.96712600884714	2.7392153752691	1.47964219375633	-1.96410198450915	0.00748512983614022	0.0888587609901158
Merged-chr16-32275216-4	chr16	32275120	32275320	+	776.99585	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_183283)	TTS (NM_183283)	-2241.0	NM_027355	70238.0	Mm.228263	NM_027355	ENSMUSG00000014074	Rnf168	3110001H15Rik	ring finger protein 168	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55788886-4	chr14	55788804	55789004	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019955)	promoter-TSS (NM_019955)	-47.0	NM_001164108	56532.0	Mm.46612	NM_019955	ENSMUSG00000022221	Ripk3	2610528K09Rik|AW107945|Rip3	receptor-interacting serine-threonine kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-86830319-3	chr8	86830219	86830419	+	742.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54939.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	0.912989519030393	0.479628972813081	0.467175442471438	1.11158949877188	0.923747267427093	0.482400927189981	1.81203831695245	0.459106234966027	1.18532226606765	0.48057923440291	0.92899940725555
Merged-chr2-48717996-4	chr2	48717901	48718101	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-96108.0	NM_007396	11480.0	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-13105593-4	chr8	13105485	13105685	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146207)	promoter-TSS (NM_146207)	-136.0	NM_146207	99375.0	Mm.212861	NM_146207	ENSMUSG00000031446	Cul4a	2810470J21Rik|AW495282	cullin 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-88621598-3	chr8	88621517	88621717	+	766.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14511.0	NM_027840	71607.0	Mm.270607	NM_027840	ENSMUSG00000031662	Snx20	9130017C17Rik	sorting nexin 20	protein-coding	3.97148896046718	4.04358488743632	3.24913637887435	4.42444936985541	3.89101093912492	4.75881355148183	4.14515873135168	4.83088659264278	0.623415204190992	0.173538730924778	0.640902961210202
Merged-chr17-71002599-4	chr17	71002489	71002689	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026064)	promoter-TSS (NM_026064)	-56.0	NM_026064	67268.0	Mm.489605	NM_026064	ENSMUSG00000024048	Myl12a	2900073G15Rik|AI838292|C80200	myosin, light chain 12A, regulatory, non-sarcomeric	protein-coding	3.61809490470855	3.97575325363356	4.32146323172783	3.50607337475422	3.99271079653285	3.669649799433	3.87552414422318	4.36925494025798	0.163827609148967	0.727802166413977	0.998431161219273
Merged-chr2-155946351-2	chr2	155946251	155946451	+	673.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008109)	promoter-TSS (NM_008109)	-984.0	NM_008109	14563.0	Mm.4744	NM_008109	ENSMUSG00000038259	Gdf5	BMP-14|Cdmp-1|bp|brp	growth differentiation factor 5	protein-coding	-2.18243820993087	-2.15538464093652	-2.16356586349869	-2.17028616330028	-2.18053909940952	-2.15361173587851	-2.16171381403791	-2.0403552525549	0.759018020146679	0.829933115115583	1
Merged-chr11-51800961-3	chr11	51800823	51801023	+	863.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37260.0	NM_025535	66397.0	Mm.196592	NM_025535	ENSMUSG00000020386	Sar1b	2310075M17Rik|2900019I22Rik|CMRD|Sara1b|Sara2|Sarb	secretion associated Ras related GTPase 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-11108168-2	chr4	11108068	11108268	+	912.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15790.0	NR_151526	100503518.0	Mm.102270	NR_151526	ENSMUSG00000086765	Gm11827	-	predicted gene 11827	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-125379034-2	chr5	125378934	125379134	+	601.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	10983.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-143594675-2	chr7	143594598	143594798	+	641.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013742, intron 1 of 22)	intron (NM_013742, intron 1 of 22)	5392.0	NM_001252593	27267.0	Mm.125659	NM_013742	ENSMUSG00000010755	Cars	CA3	cysteinyl-tRNA synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-25609077-1	chr14	25608977	25609177	+	737.0	f1_balb.idr	intron (NM_183208, intron 6 of 23)	intron (NM_183208, intron 6 of 23)	5564.0	NM_001309430	100188919.0	Mm.473810	NM_001309430		Gm45915	Israa	predicted gene, 45915	protein-coding	0.469012268832586	0.334790877151092	0.326217598162196	0.655887922359269	0.474047961769341	1.0135957006835	0.328115458856629	1.27692032436471	2.2694510268984	0.202033084067265	1
Merged-chr14-25768501-3	chr14	25768397	25768597	+	923.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001101433, intron 1 of 3)	CpG	359.0	NM_001101433	71918.0	Mm.41904	NM_001101433	ENSMUSG00000055538	Zcchc24	2310047A01Rik	zinc finger, CCHC domain containing 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-96342694-4	chr10	96342588	96342788	+	964.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	116481.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-107577182-2	chr4	107577082	107577282	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_147221, intron 4 of 10)	intron (NM_147221, intron 4 of 10)	106407.0	NR_151717	56296.0	Mm.141324	NM_019872	ENSMUSG00000028610	Dmrtb1	Dmrt6|Prp13	DMRT-like family B with proline-rich C-terminal, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-87280117-4	chr17	87280021	87280221	+	974.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015506, intron 2 of 4)	MER110-int|LTR|ERV1	2693.0	NR_015506	74597.0	Mm.63783	NR_015506	ENSMUSG00000085287	4833418N02Rik	-	RIKEN cDNA 4833418N02 gene	ncRNA	4.02386834130375	3.74271387177752	3.53796142433632	3.66804602175859	3.91576732437398	3.49784366373477	3.16604978648091	3.8183970566487	-0.176787827982339	0.724559757141046	0.998431161219273
Merged-chr7-75782161-4	chr7	75782082	75782282	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66156.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-58791920-3	chr2	58791821	58792021	+	870.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_029692)	TTS (NM_029692)	36737.0	NM_029692	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-8208239-4	chr12	8208146	8208346	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167767, intron 1 of 5)	CpG	119.0	NM_001167767	68832.0	Mm.25608	NM_172401	ENSMUSG00000037669	Ldah	1110057K04Rik|mLDAH	lipid droplet associated hydrolase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-118491535-4	chr7	118491452	118491652	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001033380, exon 1 of 1)	5' UTR (NM_001033380, exon 1 of 1)	423.0	NM_001033380	319622.0	Mm.323386	NM_001033380	ENSMUSG00000095115	Itpripl2	C130081G24|E030018N11Rik	inositol 1,4,5-triphosphate receptor interacting protein-like 2	protein-coding	3.13287205508374	2.49822452874889	1.67107160090333	3.90323621064503	3.74275904514288	3.55222414841043	4.18820317435402	3.6270450803679	1.12288731301856	0.0927927757048255	0.471216587008957
Merged-chr12-17747464-2	chr12	17747364	17747564	+	666.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016677, intron 1 of 3)	intron (NM_016677, intron 1 of 3)	56655.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-23751503-4	chr13	23751402	23751602	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178203)	promoter-TSS (NM_178203)	414.0	NM_175660	319172.0	Mm.423402	NM_175660	ENSMUSG00000061615	Hist1h2ab	H2A.1|H2a-53	histone cluster 1, H2ab	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-10965154-4	chr16	10965048	10965248	+	923.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019980, intron 2 of 3)	intron (NM_019980, intron 2 of 3)	27973.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70700661-4	chr8	70700564	70700764	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010592)	TTS (NM_010592)	2925.0	NM_001286944	16478.0	Mm.419851	NM_010592	ENSMUSG00000071076	Jund	Jund1	jun D proto-oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135675080-2	chr4	135674980	135675180	+	664.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	BGLII_A|LTR|ERVK	-11377.0	NM_174851	242700.0	Mm.259623	NM_174851	ENSMUSG00000062157	Ifnlr1	CRF2-12|Il28ra	interferon lambda receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-136826042-1	chr6	136825942	136826142	+	626.0	f1_c57bl6.idr	exon (NM_021714, exon 2 of 12)	exon (NM_021714, exon 2 of 12)	2174.0	NM_021714	60321.0	Mm.141197	NM_021714	ENSMUSG00000030216	Wbp11	2510026P17Rik|D6Wsu113e|Npwbp|SIPP1	WW domain binding protein 11	protein-coding	-0.583449067377857	-1.02282152578373	-1.03400008326803	-1.03822883962362	-0.777224525718346	-1.02039908574442	-1.03146950288059	-1.03789690212328	-0.791518325477985	0.808258493497815	1
Merged-chr7-6150921-2	chr7	6150821	6151021	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013012, intron 1 of 2)	intron (NM_001013012, intron 1 of 2)	5050.0	NM_001013012	67109.0	Mm.3254	NM_001013012	ENSMUSG00000046792	Zfp787	2210018M03Rik|Znf787	zinc finger protein 787	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-46712069-3	chr17	46712000	46712200	+	836.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_145488, exon 1 of 17)	exon (NM_145488, exon 1 of 17)	637.0	NM_145488	224824.0	Mm.299399	NM_145488	ENSMUSG00000002763	Pex6	AI132582|D130055I09Rik|mKIAA4177	peroxisomal biogenesis factor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-144343462-1	chr1	144343362	144343562	+	643.0	f0_balb.idr	Intergenic	Intergenic	-94358.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-78489812-2	chr16	78489712	78489912	+	570.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70504.0	NR_040569	75818.0	Mm.410817	NR_040569		4930478L05Rik	-	RIKEN cDNA 4930478L05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-91112311-3	chr8	91112203	91112403	+	982.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001302337, exon 10 of 10)	3' UTR (NM_001302337, exon 10 of 10)	21436.0	NM_001358938	14339.0	Mm.324588	NM_010241	ENSMUSG00000031667	Aktip	AL023020|Fif|Ft|Ft1|Fts	thymoma viral proto-oncogene 1 interacting protein	protein-coding	2.30788070831872	3.09292903212932	3.17531864742308	3.16939172022662	2.68590503338036	3.11516933172567	3.01402954037233	3.18509882234323	0.0559365712381351	0.931682700387495	0.998431161219273
Merged-chr15-103482647-2	chr15	103482547	103482747	+	775.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153505, intron 21 of 30)	intron (NM_153505, intron 21 of 30)	-20387.0	NM_008800	18574.0	Mm.390792	NM_008800	ENSMUSG00000022489	Pde1b	Pde1b1	phosphodiesterase 1B, Ca2+-calmodulin dependent	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-67359786-4	chr17	67359670	67359870	+	967.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5279.0	NM_001357625	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-46087258-2	chr1	46087161	46087361	+	745.833374	f0_balb.idr|f0_c57.idr	intron (NM_001160386, intron 6 of 65)	intron (NM_001160386, intron 6 of 65)	20523.0	NM_001160386	227058.0	Mm.296880	NM_001160386	ENSMUSG00000041144	Dnah7b	Dnahc7b|Gm107	dynein, axonemal, heavy chain 7B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-114295744-4	chr6	114295634	114295834	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178703, intron 1 of 15)	intron (NM_178703, intron 1 of 15)	13099.0	NM_178703	232333.0	Mm.5260	NM_178703	ENSMUSG00000030310	Slc6a1	A730043E01|GABATHG|GABATR|GAT-1|Gabt|Gabt1|Gat1|XT-1|Xtrp1	solute carrier family 6 (neurotransmitter transporter, GABA), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-121474789-2	chr10	121474689	121474889	+	562.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_138956, intron 1 of 4)	intron (NM_138956, intron 1 of 4)	1461.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-43035312-2	chr17	43035210	43035410	+	696.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_178589, intron 1 of 5)	PB1D10|SINE|Alu	18755.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-77417839-2	chr10	77417739	77417939	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027377)	promoter-TSS (NR_027377)	434.0	NM_130895	110532.0	Mm.276815	NM_130895	ENSMUSG00000020262	Adarb1	1700057H01Rik|AW124433|AW558573|Adar2|BB220382|D10Bwg0447e|Red1	adenosine deaminase, RNA-specific, B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70649223-3	chr8	70649154	70649354	+	754.422241	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_023217, exon 5 of 5)	3' UTR (NM_023217, exon 5 of 5)	10484.0	NM_023217	66522.0	Mm.154906	NM_023217	ENSMUSG00000056204	Pgpep1	2810003H13Rik|Gm19458|PAP-I|PGP|PGP-I|PGPI|Pcp	pyroglutamyl-peptidase I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-79639255-4	chr8	79639155	79639355	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001256033)	promoter-TSS (NM_001256033)	-421.0	NM_001256033	73945.0	Mm.34348	NM_001081164	ENSMUSG00000036990	Otud4	4930431L18Rik|AI449692|D8Ertd69e|mKIAA1046	OTU domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-121474152-4	chr10	121474052	121474252	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138956, intron 1 of 4)	intron (NM_138956, intron 1 of 4)	2098.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-5517589-4	chr15	5517476	5517676	+	837.552063	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045274, intron 1 of 4)	intron (NR_045274, intron 1 of 4)	21258.0	NR_045274	71432.0	Mm.291087	NR_045274	ENSMUSG00000110018	5430437J10Rik	-	RIKEN cDNA 5430437J10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-88469110-3	chr15	88469082	88469282	+	685.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-131120.0	NM_027306	70073.0	Mm.45306	NM_027306	ENSMUSG00000054117	Zdhhc25	1700030J15Rik	zinc finger, DHHC domain containing 25	protein-coding	2.18951203795325	2.58504719853032	2.37539556009669	1.85198363291502	2.60338722602359	3.08789696115506	1.7021374728058	2.89609191506622	0.845869675935873	0.308803198444305	0.809295017856989
Merged-chr14-30764606-3	chr14	30764503	30764703	+	813.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166531, intron 2 of 21)	intron (NM_001166531, intron 2 of 21)	48988.0	NM_001166532	54650.0	Mm.294662	NM_019460	ENSMUSG00000006527	Sfmbt1	4930442N21Rik|9330180L21Rik|AA536974|Sfmbt|Smr	Scm-like with four mbt domains 1	protein-coding	-1.14851531356494	-1.26444994169594	-1.27461838696925	-1.28297105067364	-1.29219799216433	-1.26224639718654	-1.27231647384535	-0.855628795262999	1.28980919109289	0.704711951929552	1
Merged-chr12-3573863-2	chr12	3573763	3573963	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007886, intron 1 of 18)	intron (NM_007886, intron 1 of 18)	879.0	NM_007886	13528.0	Mm.286202	NM_007886	ENSMUSG00000071454	Dtnb	-	dystrobrevin, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-78437360-2	chr9	78437260	78437460	+	718.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_173386, exon 2 of 5)	exon (NM_173386, exon 2 of 5)	5877.0	NR_125721	214763.0	Mm.101559	NM_173386	ENSMUSG00000032344	Mb21d1	E330016A19Rik|cGAS	Mab-21 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-71014562-2	chr12	71014462	71014662	+	606.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045056, intron 1 of 2)	intron (NR_045056, intron 1 of 2)	1261.0	NR_045056	73204.0	Mm.363770	NR_045055	ENSMUSG00000085622	3110056K07Rik	4921536K06Rik	RIKEN cDNA 3110056K07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-75810107-1	chr13	75810007	75810207	+	568.0	f0_c57.idr	Intergenic	RLTR35B_MM|LTR|ERVL	-29778.0	NM_001360151	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	0.892429900511366	1.67865065212698	1.12469585155658	1.6438382585481	0.898349842454149	1.17518528085685	0.752559123998963	1.09784404067786	-1.69207434004994	0.210281998016286	0.69949048545273
Merged-chr3-151771283-3	chr3	151771193	151771393	+	680.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR41|LTR|ERVL	-8402.0	NM_031367	15061.0	Mm.219544	NM_031367	ENSMUSG00000039146	Ifi44l	H-28|H28|H28-1|NS1178	interferon-induced protein 44 like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-9111156-4	chr4	9111055	9111255	+	849.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-158138.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-11706327-2	chr2	11706227	11706427	+	785.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271499, intron 1 of 6)	intron (NM_001271499, intron 1 of 6)	615.0	NM_001271500	16169.0	Mm.200196	NM_008358	ENSMUSG00000023206	Il15ra	AA690181|IL-15RA	interleukin 15 receptor, alpha chain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-93520574-2	chr3	93520474	93520674	+	703.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016740)	promoter-TSS (NM_016740)	78.0	NM_016740	20195.0	Mm.280038	NM_016740	ENSMUSG00000027907	S100a11	EMAPI|Emap1|S100a14|S100c|cal	S100 calcium binding protein A11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-44494670-3	chr10	44494568	44494768	+	965.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35920.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-156077435-5	chr4	156077360	156077560	+	808.679993	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17658.0	NR_132444	100415901.0	Mm.437006	NR_132444	ENSMUSG00000086549	Gm13648	-	predicted gene 13648	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-9990352-3	chr2	9990244	9990444	+	707.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027748, intron 2 of 6)	intron (NM_027748, intron 2 of 6)	58265.0	NM_027748	209361.0	Mm.86343	NM_027748	ENSMUSG00000025782	Taf3	140kDa|4933439M23Rik|AW539625|TAF140|TAFII-140|TAFII140|mTAFII140	TATA-box binding protein associated factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-59009333-4	chr4	59009232	59009432	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033165, intron 1 of 3)	intron (NM_001033165, intron 1 of 3)	6139.0	NM_001033165	72429.0	Mm.317801	NM_001033165	ENSMUSG00000070972	Dnajc25	2010109C08Rik|2010203O07Rik	DnaJ heat shock protein family (Hsp40) member C25	protein-coding	2.46642778831128	1.47308988270446	2.43920609355044	2.71091609959046	2.25696800112171	3.54843739531495	3.37284837574668	2.07431231722749	1.17598868234575	0.159262439940456	0.618391829904723
Merged-chr2-164917752-2	chr2	164917652	164917852	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15-int|LTR|ERVL	-6002.0	NM_199027	329559.0	Mm.330776	NM_199027	ENSMUSG00000039834	Zfp335	1810045J01Rik|NIF-1|Nif1|Znf335	zinc finger protein 335	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-9084123-2	chr13	9084023	9084223	+	954.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-9758.0	NM_001311117	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-39084400-1	chr6	39084300	39084500	+	581.0	f0_balb.idr	3' UTR (NM_011539, exon 13 of 13)	3' UTR (NM_011539, exon 13 of 13)	-16814.0	NR_040523	69986.0	Mm.490941	NR_040523	ENSMUSG00000100121	1700025N23Rik	-	RIKEN cDNA 1700025N23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-60984783-2	chr18	60984683	60984883	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009792, exon 7 of 7)	3' UTR (NM_009792, exon 7 of 7)	21229.0	NM_001286809	12322.0	Mm.131530	NM_009792	ENSMUSG00000024617	Camk2a	CaMKII|R74975|mKIAA0968	calcium/calmodulin-dependent protein kinase II alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-113641011-2	chr6	113640911	113641111	+	828.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 1 of 11)	intron (NM_001113553, intron 1 of 11)	2544.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-69425076-4	chr12	69424984	69425184	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50466.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	2.88723008223717	3.31263560167367	3.70937824738384	2.45698179344989	4.55252482472478	4.96696022279868	4.85774759768128	5.68203463705175	2.53663809213494	1.14528214736695e-07	9.81506800293478e-06
Merged-chr7-136321901-3	chr7	136321811	136322011	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27504.0	NR_040459	330664.0	Mm.127762	NR_040459	ENSMUSG00000109633	C230079O03Rik	C230079O03	RIKEN cDNA C230079O03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115623012-3	chr5	115622888	115623088	+	845.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_172719)	TTS (NM_172719)	8828.0	NR_027810	66123.0	Mm.133063	NM_021417	ENSMUSG00000107121	1110006O24Rik	-	RIKEN cDNA 1110006O24 gene	ncRNA	-0.328485408621411	-0.313801182826123	-0.318599646620931	-0.322309889347996	0.426254021801333	-0.312721134269449	0.28331526107478	-0.321661199717722	3.79718971205449	0.135737096960353	1
Merged-chr11-64517054-3	chr11	64516946	64517146	+	788.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178870, intron 1 of 1)	intron (NM_178870, intron 1 of 1)	-80372.0	NR_028445	654805.0	Mm.436132	NR_028445		F930015N05Rik	-	RIKEN cDNA F930015N05 gene	ncRNA	3.30890889155306	1.94104454441308	3.23402638652631	2.84326139597399	1.90715578037157	1.71095096649406	3.19003087543417	1.32155407078838	-1.27890638587469	0.160268456237814	0.62016942789409
Merged-chr7-55711087-3	chr7	55711010	55711210	+	963.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57074.0	NM_001310740	233274.0	Mm.44425	NM_178706	ENSMUSG00000051504	Siglech	6430529G09Rik|Siglec-H	sialic acid binding Ig-like lectin H	protein-coding	0.000367733610606477	0.0753938018298981	-0.152596645562944	-0.157752117945163	-0.165109560903974	-0.144491111993062	0.967741485996526	0.0356642291168787	2.476950264918	0.251232130046848	1
Merged-chr13-85286762-2	chr13	85286662	85286862	+	627.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145452, intron 1 of 24)	B3|SINE|B2	2724.0	NM_145452	218397.0	Mm.259653	NM_145452	ENSMUSG00000021549	Rasa1	Gap|RasGAP|Rasa	RAS p21 protein activator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-101931668-2	chr5	101931568	101931768	+	873.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 15 of 66)	intron (NM_172882, intron 15 of 66)	138253.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-9599870-2	chr13	9599770	9599970	+	833.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081426, intron 17 of 36)	intron (NM_001081426, intron 17 of 36)	163940.0	NM_001347471	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-105034215-2	chr12	105034115	105034315	+	686.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028419, intron 1 of 1)	PB1D10|SINE|Alu	1597.0	NM_028419	73046.0	Mm.29128	NM_028419	ENSMUSG00000021102	Glrx5	-	glutaredoxin 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-71033889-1	chr12	71033789	71033989	+	733.0	f1_c57bl6.idr	intron (NM_001081195, intron 5 of 23)	intron (NM_001081195, intron 5 of 23)	17922.0	NM_001081195	238247.0	Mm.241601	NM_001081195	ENSMUSG00000048118	Arid4a	A630009N03|A630067N03Rik|Rbbp1	AT rich interactive domain 4A (RBP1-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-57103949-2	chr14	57103849	57104049	+	730.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_008125, intron 1 of 1)	CpG	753.0	NM_008125	14619.0	Mm.390683	NM_008125	ENSMUSG00000046352	Gjb2	AI325222|Cnx26|Cx26|Gjb-2	gap junction protein, beta 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-142443894-2	chr7	142443794	142443994	+	637.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009405, intron 4 of 5)	intron (NM_009405, intron 4 of 5)	1426.0	NM_009405	21953.0	Mm.39469	NM_009405	ENSMUSG00000031097	Tnni2	-	troponin I, skeletal, fast 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-25773726-4	chr17	25773634	25773834	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026238)	promoter-TSS (NM_026238)	-42.0	NM_026238	67563.0	Mm.24201	NM_026238	ENSMUSG00000002280	Narfl	9030612I22Rik|AI504405|PRN	nuclear prelamin A recognition factor-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-125407439-2	chr5	125407339	125407539	+	876.400024	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-17422.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-28485831-1	chr10	28485731	28485931	+	730.0	f0_balb.idr	intron (NM_001359356, intron 11 of 30)	intron (NM_001359356, intron 11 of 30)	-182529.0	NM_001305663	210757.0	Mm.123021	NM_178666	ENSMUSG00000049109	Themis	E430004N04Rik|Gasp|Spot|Tsepa|thylex	thymocyte selection associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-140266299-2	chr1	140266197	140266397	+	621.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081027, intron 1 of 27)	intron (NM_001081027, intron 1 of 27)	20040.0	NM_001081027	240776.0	Mm.483845	NM_001081027	ENSMUSG00000052726	Kcnt2	E330038N15Rik|Slick	potassium channel, subfamily T, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72544545-6	chr6	72544437	72544637	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271415)	promoter-TSS (NM_001271415)	0.0	NM_001271415	12332.0	Mm.18626	NM_007599	ENSMUSG00000056737	Capg	gCap39|mbh1	capping protein (actin filament), gelsolin-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-65807150-4	chr11	65807073	65807273	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026107)	promoter-TSS (NM_026107)	-2.0	NM_001302374	52712.0	Mm.340052	NM_026107	ENSMUSG00000018347	Zkscan6	1700128E15Rik|D11Ertd714e|KOX11|Zfp535|Znf18	zinc finger with KRAB and SCAN domains 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-125511620-1	chr7	125511520	125511720	+	968.0	f1_c57bl6.idr	Intergenic	Intergenic	-20078.0	NM_026330	67711.0	Mm.4467	NM_026330	ENSMUSG00000030750	Nsmce1	2510027N19Rik	NSE1 homolog, SMC5-SMC6 complex component	protein-coding	1.6619085591483	3.13945474986991	0.796576746125946	2.30537523338164	0.995570180611357	1.15066023590463	0.803644940425302	1.06038152151386	-3.62545707236324	0.00549993371121156	0.071778322698096
Merged-chr5-139197181-4	chr5	139197074	139197274	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3463.0	NM_001256115	77053.0	Mm.210845	NM_024451	ENSMUSG00000036817	Sun1	4632417G13Rik|5730434D03Rik|Unc84a|mKIAA0810	Sad1 and UNC84 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-98267812-4	chr12	98267708	98267908	+	959.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008152)	promoter-TSS (NM_008152)	-827.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-6695012-2	chr8	6694912	6695112	+	564.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus4|LINE|L1	-1589725.0	NM_011388	20494.0	Mm.3500	NM_011388	ENSMUSG00000023073	Slc10a2	9130221J18Rik|AI605518|ASBT|IBAT|ISBT	solute carrier family 10, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-87533233-4	chr6	87533106	87533306	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286610)	promoter-TSS (NM_001286610)	53.0	NM_001037727	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-29214555-4	chr6	29214405	29214605	+	781.354187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302933, intron 1 of 14)	intron (NM_001302933, intron 1 of 14)	1859.0	NM_001302933	23917.0	Mm.260707	NM_011829	ENSMUSG00000003500	Impdh1	B930086D20Rik|IMPDH-I	inosine monophosphate dehydrogenase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153163145-3	chr2	153163049	153163249	+	854.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133847, intron 1 of 17)	intron (NM_133847, intron 1 of 17)	1848.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101204709-1	chr15	101204609	101204809	+	556.0	f1_c57bl6.idr	intron (NM_007395, intron 7 of 8)	intron (NM_007395, intron 7 of 8)	10840.0	NR_105927	102466774.0		NR_105927	ENSMUSG00000106563	Mir6962	mmu-mir-6962	microRNA 6962	ncRNA	-0.413270832553205	0.248879758316469	-0.403519686790488	-0.4071766335812	-0.41236239857827	0.260274020124072	-0.402476173372258	-0.406537021983025	0.0394809277679939	0.98817139586833	1
Merged-chr7-73531391-2	chr7	73531291	73531491	+	634.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081345, intron 2 of 38)	B3|SINE|B2	10355.0	NM_001081345	244059.0	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70787886-2	chr11	70787786	70787986	+	797.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23439.0	NM_177565	193043.0	Mm.40966	NM_177565	ENSMUSG00000043602	Zfp3	AI854635|B230309J24|Fnp-1|Zfp-3	zinc finger protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127568349-2	chr10	127568215	127568415	+	722.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 38 of 88)	intron (NM_008512, intron 38 of 88)	-33756.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-45552239-4	chr17	45552128	45552328	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2551.0	NM_001013749	210573.0	Mm.329064	NM_001013749	ENSMUSG00000096847	Tmem151b	Gm323	transmembrane protein 151B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-12031697-2	chr15	12031597	12031797	+	715.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35690.0	NM_011294	20024.0	Mm.41746	NM_011294	ENSMUSG00000022205	Sub1	AI842364|P15|P9|Pc4|Rpo2tc1	SUB1 homolog (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-33539735-3	chr6	33539621	33539821	+	907.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009148, intron 9 of 17)	intron (NM_009148, intron 9 of 17)	290593.0	NM_001347089	20336.0	Mm.265512	NM_009148	ENSMUSG00000029763	Exoc4	C78892|Sec8|Sec8l1	exocyst complex component 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52042062-4	chr13	52041959	52042159	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54682.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-6576223-2	chr13	6576123	6576323	+	900.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360106, intron 23 of 26)	B2_Mm2|SINE|B2	28066.0	NM_001360106	69617.0	Mm.41933	NM_145131	ENSMUSG00000021193	Pitrm1	2310012C15Rik|AA410010|MP-1|MP1|Ntup1|PreP|mKIAA1104	pitrilysin metallepetidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-108338554-2	chr9	108338454	108338654	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001329528)	promoter-TSS (NM_001329528)	-526.0	NM_001329528	14775.0	Mm.1090	NM_008160	ENSMUSG00000063856	Gpx1	AI195024|AL033363|CGPx|GPx-1|GSHPx-1|Gpx	glutathione peroxidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-4348970-8	chr18	4348891	4349091	+	974.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007746, exon 2 of 8)	exon (NM_007746, exon 2 of 8)	3962.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6855460-2	chr19	6855360	6855560	+	864.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081291, exon 10 of 27)	exon (NM_001081291, exon 10 of 27)	2751.0	NM_001081291	78317.0	Mm.329596	NM_198008	ENSMUSG00000047810	Ccdc88b	2610041P08Rik|Ccdc88	coiled-coil domain containing 88B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85473540-4	chr12	85473437	85473637	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010234)	promoter-TSS (NM_010234)	-353.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-50449768-4	chr15	50449681	50449881	+	984.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	439268.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	3.68921130311143	4.15980075389124	3.25954259818887	3.63903566109656	2.92811302259954	3.66877582436917	3.07089413293691	2.72029567785009	-0.91492769286816	0.107780122370176	0.513452592322685
Merged-chr15-84232210-7	chr15	84232056	84232256	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_133167, exon 1 of 13)	exon (NM_133167, exon 1 of 13)	113.0	NM_133167	170736.0	Mm.323892	NM_133167	ENSMUSG00000022438	Parvb	AI595373|AW742462|D15Gsk1|affixin	parvin, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-136602592-2	chr6	136602492	136602692	+	781.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019426, intron 12 of 14)	intron (NM_019426, intron 12 of 14)	59301.0	NM_025806	66857.0	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-58284666-4	chr14	58284549	58284749	+	961.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	211963.0	NM_013518	14180.0	Mm.8846	NM_013518	ENSMUSG00000021974	Fgf9	Eks	fibroblast growth factor 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85280392-4	chr12	85280301	85280501	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025421)	promoter-TSS (NM_025421)	34.0	NM_025421	66204.0	Mm.311985	NM_025421	ENSMUSG00000008822	Acyp1	1110039O14Rik|AI325944	acylphosphatase 1, erythrocyte (common) type	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126144518-4	chr7	126144427	126144627	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028816, intron 8 of 23)	MTD|LTR|ERVL-MaLR	55974.0	NM_001311143	74204.0	Mm.235663	NM_028816	ENSMUSG00000000131	Xpo6	2610005L19Rik|AL022631|C230091E20Rik|R75304|Ranbp20|exp6|mKIAA0370	exportin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-163642277-2	chr2	163642175	163642375	+	914.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_012032, intron 1 of 9)	intron (NM_012032, intron 1 of 9)	-2575.0	NR_028113	68386.0	Mm.410649	NR_028113	ENSMUSG00000058812	0610039K10Rik	-	RIKEN cDNA 0610039K10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27677776-3	chr2	27677658	27677858	+	867.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011305, intron 1 of 9)	CpG	557.0	NM_011305	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-59114469-3	chr19	59114354	59114554	+	588.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-38385.0	NM_001114312	71653.0	Mm.37338	NM_175172	ENSMUSG00000041362	Shtn1	4930506M07Rik|Shootin1|mKIAA1598	shootin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-5058810-2	chr7	5058710	5058910	+	565.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146178, intron 3 of 4)	intron (NM_146178, intron 3 of 4)	2084.0	NM_146178	232821.0	Mm.482157	NM_146178	ENSMUSG00000035228	Ccdc106	BC018462	coiled-coil domain containing 106	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96213108-2	chr3	96213008	96213208	+	845.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-6808.0	NM_178213	621893.0		NM_178213	ENSMUSG00000063689	Hist2h2ab	EG621893|H2a-613a	histone cluster 2, H2ab	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-47645222-2	chr9	47645122	47645322	+	726.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	114870.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27381449-1	chr2	27381349	27381549	+	674.0	f0_balb.idr	intron (NR_133905, intron 1 of 29)	intron (NR_133905, intron 1 of 29)	46159.0	NR_133905	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-121586746-2	chr8	121586646	121586846	+	927.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3722.0	NM_026160	67443.0	Mm.28357	NM_026160	ENSMUSG00000031812	Map1lc3b	1010001C15Rik|Atg8|LC3b|Map1lc3	microtubule-associated protein 1 light chain 3 beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-58599828-2	chr2	58599728	58599928	+	658.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289660, intron 1 of 7)	intron (NM_001289660, intron 1 of 7)	32494.0	NM_001289660	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30135451-4	chr2	30135367	30135567	+	882.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146252, intron 2 of 11)	intron (NM_146252, intron 2 of 11)	1721.0	NM_146252	70296.0	Mm.19172	NM_146252	ENSMUSG00000039678	Tbc1d13	2600014A06Rik|BC025586	TBC1 domain family, member 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-95152783-4	chr10	95152706	95152906	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6981.0	NR_131146	628062.0		NR_131146	ENSMUSG00000112481	Gm29684	-	predicted gene, 29684	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43973681-4	chr4	43973583	43973783	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027450, intron 4 of 4)	intron (NM_027450, intron 4 of 4)	-9821.0	NM_001002787	442829.0	Mm.348215	NM_001002787	ENSMUSG00000070999	Ccin	4933417A14Rik	calicin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-103313584-4	chr15	103313499	103313699	+	923.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_013866)	TTS (NM_013866)	-3161.0	NM_030720	80910.0	Mm.160369	NM_030720	ENSMUSG00000063234	Gpr84	EX33	G protein-coupled receptor 84	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-57655912-4	chr9	57655788	57655988	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2257.0	NM_001304761	12988.0	Mm.21974	NM_007783	ENSMUSG00000032312	Csk	AW212630|p50CSK	c-src tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-23844298-2	chr18	23844198	23844398	+	761.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162941, intron 3 of 7)	B4A|SINE|B4	40328.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-80192554-1	chr18	80192454	80192654	+	567.0	f1_balb.idr	non-coding (NR_131039, exon 5 of 5)	non-coding (NR_131039, exon 5 of 5)	6315.0	NR_131039	105246506.0	Mm.392326	NR_131039		LOC105246506	-	uncharacterized LOC105246506	ncRNA	1.16002238860578	0.635139690182979	1.76209260527212	0.612784843611892	0.927626835805635	1.35714393345663	0.625392025499444	0.981096930964402	-0.596488462414601	0.696867581016778	0.997929106458421
Merged-chr5-66144464-4	chr5	66144353	66144553	+	923.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127382, intron 2 of 7)	intron (NM_001127382, intron 2 of 7)	6525.0	NM_001291226	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-62296430-2	chr4	62296330	62296530	+	619.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290518, intron 3 of 3)	intron (NM_001290518, intron 3 of 3)	4883.0	NM_001290518	20530.0	Mm.292539	NM_025286	ENSMUSG00000066152	Slc31a2	AI604396|CTR2	solute carrier family 31, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-123927436-4	chr9	123927324	123927524	+	904.162476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41268.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-50491679-4	chr17	50491578	50491778	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER105|DNA|DNA	-17869.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-21200148-3	chr2	21200046	21200246	+	669.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027728, intron 1 of 4)	intron (NM_027728, intron 1 of 4)	5219.0	NM_027728	71233.0	Mm.27658	NM_027728	ENSMUSG00000026679	Enkur	4933434I06Rik|AU016229	enkurin, TRPC channel interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53826001-4	chr4	53825902	53826102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028053)	promoter-TSS (NM_028053)	-43.0	NM_028053	52076.0	Mm.27184	NM_028053	ENSMUSG00000028420	Tmem38b	1600017F22Rik|AA437809|AV051057|D4Ertd89e|TRIC-B|mg33b	transmembrane protein 38B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-143016506-2	chr7	143016406	143016606	+	545.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001128081, intron 5 of 6)	intron (NM_001128081, intron 5 of 6)	10847.0	NM_001128081	27027.0	Mm.28172	NM_020286	ENSMUSG00000000244	Tspan32	AW208513|Art-1|BB235973|D7Wsu37e|Phemx|Tssc6	tetraspanin 32	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-109666872-4	chr4	109666751	109666951	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001301368)	promoter-TSS (NM_001301368)	-95.0	NM_001301368	12580.0	Mm.1912	NM_007671	ENSMUSG00000028551	Cdkn2c	C77269|INK4c|p18|p18-INK4c|p18-INK6|p18INK4c	cyclin dependent kinase inhibitor 2C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-62360528-4	chr4	62360456	62360656	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175090)	promoter-TSS (NM_175090)	40.0	NM_001355385	338355.0	Mm.357792	NM_001045528	ENSMUSG00000066151	Fkbp15	BB131447|C430014M02Rik|FKBO133|FKBP-133|FKBP-15|FKBP133|mKIAA0674	FK506 binding protein 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28932679-4	chr7	28932590	28932790	+	916.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021895, intron 1 of 20)	intron (NM_021895, intron 1 of 20)	29642.0	NM_001360549	60595.0	Mm.81144	NM_021895	ENSMUSG00000054808	Actn4	C77391	actinin alpha 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-41528765-4	chr3	41528674	41528874	+	760.045837	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_130791)	promoter-TSS (NR_130791)	-300.0	NR_130791	78648.0	Mm.366093	NR_130791		2400006E01Rik	Gm43733|lncRNA-JADE	RIKEN cDNA 2400006E01 gene	ncRNA	0.817601409793128	2.63595009471207	2.23432813146571	1.47776404979874	0.822977652834523	1.18697742779807	1.14536542016976	1.6358979790202	-2.16374976355333	0.0859104451271578	0.450386958032513
Merged-chr19-34152109-4	chr19	34152007	34152207	+	917.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024204, intron 1 of 5)	intron (NM_024204, intron 1 of 5)	13934.0	NM_024204	52024.0	Mm.183030	NM_024204	ENSMUSG00000024774	Ankrd22	5430429D21Rik|D19Ertd675e	ankyrin repeat domain 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-63614313-4	chr9	63614218	63614418	+	979.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151671, intron 1 of 9)	intron (NR_151671, intron 1 of 9)	11672.0	NR_151671	66939.0	Mm.34338	NM_025857	ENSMUSG00000037257	Aagab	2310007F21Rik|p34	alpha- and gamma-adaptin binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115267335-2	chr11	115267319	115267519	+	845.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010350)	promoter-TSS (NM_010350)	-176.0	NM_010350	14813.0	Mm.39090	NM_010350	ENSMUSG00000020734	Grin2c	GluN2C|NMDAR2C|NR2C	glutamate receptor, ionotropic, NMDA2C (epsilon 3)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-102024647-2	chr7	102024547	102024747	+	926.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029211, intron 6 of 8)	intron (NM_029211, intron 6 of 8)	-6492.0	NM_010531	16068.0	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101883262-3	chr7	101883177	101883377	+	865.288879	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291353, intron 1 of 5)	intron (NM_001291353, intron 1 of 5)	1952.0	NM_001291353	75430.0	Mm.284491	NM_027532	ENSMUSG00000030649	Anapc15	3200002M19Rik|6330414C15Rik|APC15	anaphase prompoting complex C subunit 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34281320-3	chr17	34281218	34281418	+	707.888916	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6453.0	NM_010378	14960.0	Mm.235338	NM_010378	ENSMUSG00000036594	H2-Aa	Aalpha|H-2Aa|H2Aa|I-Aalpha|IAalpha|Ia-1|Ia1	histocompatibility 2, class II antigen A, alpha	protein-coding	2.07867561343257	2.08383431155416	2.25515954643914	1.24610419246791	2.56717151561311	2.35249187750039	1.88408350952775	1.66798366948476	0.507562726250006	0.606381131026863	0.974576632476413
Merged-chr3-84039400-4	chr3	84039318	84039518	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172681, intron 1 of 34)	CpG	743.0	NM_172681	229473.0	Mm.28838	NM_172681	ENSMUSG00000033767	Tmem131l	D930015E06Rik|Kiaa0922|mKIAA0922	transmembrane 131 like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21602155-4	chr9	21602069	21602269	+	958.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6160.0	NR_003372	666043.0	Mm.247282	NR_003372		Gm7904	EG666043	predicted gene 7904	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80202115-4	chr7	80202007	80202207	+	963.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360135, intron 1 of 13)	intron (NM_001360135, intron 1 of 13)	3666.0	NM_001360135	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-144600032-4	chr2	144599910	144600110	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025314)	promoter-TSS (NM_025314)	57.0	NM_025314	66044.0	Mm.28109	NM_025314	ENSMUSG00000027430	Dtd1	0610006H08Rik|DTD|DUE-B|Hars2	D-tyrosyl-tRNA deacylase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-17286525-3	chr6	17286454	17286654	+	776.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016900, intron 2 of 2)	intron (NM_016900, intron 2 of 2)	5369.0	NM_016900	12390.0	Mm.396075	NM_016900	ENSMUSG00000000058	Cav2	AI447843	caveolin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-112000322-4	chr7	112000195	112000395	+	956.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2-int|LTR|ERVL-MaLR	-23211.0	NM_133758	74996.0	Mm.16974	NM_133758	ENSMUSG00000059263	Usp47	4930502N04Rik|A630020C16Rik	ubiquitin specific peptidase 47	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-120406538-4	chr4	120406438	120406638	+	913.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013883, intron 1 of 16)	intron (NM_013883, intron 1 of 16)	1257.0	NM_013883	29871.0	Mm.427014	NM_013883	ENSMUSG00000000085	Scmh1	AI315320|AI851618|Scml1|Scml3	sex comb on midleg homolog 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-107213598-3	chr4	107213494	107213694	+	825.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081272, intron 2 of 4)	intron (NM_001081272, intron 2 of 4)	4414.0	NM_001081272	546840.0	Mm.331755	NM_001081272	ENSMUSG00000070877	Ldlrad1	-	low density lipoprotein receptor class A domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-24443336-2	chr5	24443236	24443436	+	895.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_023229, exon 3 of 10)	exon (NM_023229, exon 3 of 10)	1899.0	NM_023229	66587.0	Mm.28123	NM_023229	ENSMUSG00000028959	Fastk	0610011K02Rik|610011K02Rik	Fas-activated serine/threonine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-34779111-2	chr18	34779011	34779211	+	744.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081256, intron 1 of 23)	intron (NM_001081256, intron 1 of 23)	2103.0	NM_001081256	277250.0	Mm.277906	NM_029518	ENSMUSG00000038773	Kdm3b	5830462I21Rik|JHDM2B|Jmjd1b|mKIAA1082	KDM3B lysine (K)-specific demethylase 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-117509008-2	chr5	117508955	117509155	+	838.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001312914, intron 3 of 19)	B4A|SINE|B4	95053.0	NM_001312914	333050.0	Mm.437947	NM_001034873	ENSMUSG00000061578	Ksr2	-	kinase suppressor of ras 2	protein-coding	1.49325842309992	0.771925433753734	0.757808081669124	1.59053057505954	0.91147839799896	1.62250221290525	0.760945343958981	1.60044180587661	0.249156217408419	0.865207944116477	0.998431161219273
Merged-chr6-34936797-2	chr6	34936697	34936897	+	744.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009292, intron 7 of 8)	intron (NM_009292, intron 7 of 8)	15849.0	NM_009292	20899.0	Mm.5171	NM_009292	ENSMUSG00000029848	Stra8	-	stimulated by retinoic acid gene 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127852984-2	chr7	127852884	127853084	+	827.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11176.0	NM_009294	20909.0	Mm.24867	NM_009294	ENSMUSG00000030805	Stx4a	Stx4|Syn-4|Syn4	syntaxin 4A (placental)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-45250547-2	chr9	45250447	45250647	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001198971)	TTS (NM_001198971)	16160.0	NR_106054	102466803.0		NR_106054	ENSMUSG00000098361	Mir7086	Gm27643|mmu-mir-7086	microRNA 7086	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-47370900-1	chr8	47370800	47371000	+	798.0	f0_balb.idr	Intergenic	Intergenic	-18552.0	NM_175162	71069.0	Mm.23973	NM_175162	ENSMUSG00000038143	Stox2	4933409N07Rik|AI449080|AI835114|mKIAA1392	storkhead box 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167844760-2	chr2	167844660	167844860	+	769.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-87567.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-138686070-4	chr5	138685968	138686168	+	956.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	63209.0	NM_183025	243308.0	Mm.36612	NM_183025	ENSMUSG00000056014	A430033K04Rik	C86988	RIKEN cDNA A430033K04 gene	protein-coding	5.13355022734163	5.33681298930432	4.8665763621691	5.33765696751431	4.55458894486856	3.71702615936506	3.47190684946902	4.68322733992277	-1.17864636085646	0.00240859079769482	0.0384968104672413
Merged-chr17-5196094-2	chr17	5195994	5196194	+	903.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 4 of 19)	intron (NM_001085355, intron 4 of 19)	201020.0	NM_001085355	239985.0	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-71663177-2	chr2	71663077	71663277	+	572.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_039557, intron 2 of 3).2	intron (NR_039557, intron 2 of 3).2	-56240.0	NR_037979	381371.0	Mm.330284	NM_201366	ENSMUSG00000064263	Platr26	Gm1631	pluripotency associated transcript 26	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-113031598-4	chr12	113031489	113031689	+	967.3500369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081170, intron 1 of 23)	ORR1F|LTR|ERVL-MaLR	17081.0	NM_001291444	217893.0	Mm.35754	NM_198165	ENSMUSG00000021143	Pacs2	6720425G15Rik|AW208651|AW489976|E230011J22|Pacs1l|mKIAA0602	phosphofurin acidic cluster sorting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-62763341-4	chr5	62763239	62763439	+	942.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178407, intron 1 of 32)	intron (NM_178407, intron 1 of 32)	2838.0	NM_178407	212285.0	Mm.244403	NM_178407	ENSMUSG00000037999	Arap2	Centd1|Gm148|mKIAA0580	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding	2.57133884891325	2.97015939262116	2.2313605531588	2.41750495663238	2.87992494034929	2.46708606589308	1.44173299428557	2.18027266838021	-0.463671746366107	0.589515610291213	0.968907675192219
Merged-chr18-84849119-4	chr18	84849018	84849218	+	947.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2220.0	NM_025797	109672.0	Mm.31018	NM_025797	ENSMUSG00000024646	Cyb5a	0610009N12Rik|Cyb5	cytochrome b5 type A (microsomal)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-50612206-4	chr10	50612115	50612315	+	980.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198007, intron 3 of 41)	intron (NM_198007, intron 3 of 41)	19546.0	NM_198007	77987.0	Mm.222497	NM_198007	ENSMUSG00000038774	Ascc3	ASC1p200|B630009I04Rik|BC023451|D430001L07Rik|D630041L21|Helic1|RNAH	activating signal cointegrator 1 complex subunit 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-55231163-2	chr18	55231063	55231263	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-238572.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31159479-2	chr14	31159379	31159579	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_138672, intron 16 of 68)	intron (NM_138672, intron 16 of 68)	9162.0	NM_138672	192187.0	Mm.220821	NM_138672	ENSMUSG00000042286	Stab1	FEEL-1|FELE-1|MFEEL-1|MS-1|STAB-1|mKIAA0246	stabilin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-29432918-2	chr6	29432818	29433018	+	559.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311074)	promoter-TSS (NM_001311074)	-235.0	NM_001081185	68794.0	Mm.39046	NM_026839	ENSMUSG00000068699	Flnc	1110055E19Rik|ABP-280|ABPL|Fln2	filamin C, gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-104057312-3	chr9	104057203	104057403	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025692, intron 3 of 11)	intron (NM_025692, intron 3 of 11)	5818.0	NM_025692	66663.0	Mm.224935	NM_025692	ENSMUSG00000032557	Uba5	5730525G14Rik|AW240750|Ube1dc1	ubiquitin-like modifier activating enzyme 5	protein-coding	1.26017414792743	3.00363597089922	1.43356734504974	1.37224694061876	4.24309132428069	4.18135855116716	4.28970013801992	4.29013870546163	3.77073639080607	0.00586605196822496	0.0755159780201321
Merged-chr7-141563247-3	chr7	141563146	141563346	+	682.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357068, intron 1 of 21)	intron (NM_001357068, intron 1 of 21)	1066.0	NM_007459	11772.0	Mm.253090	NM_007459	ENSMUSG00000002957	Ap2a2	2410074K14Rik|AF006990|AW146353|Adtab|C78001|L25	adaptor-related protein complex 2, alpha 2 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-113333852-2	chr6	113333752	113333952	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_133926)	TTS (NM_133926)	6876.0	NM_010957	18294.0	Mm.43612	NM_010957	ENSMUSG00000030271	Ogg1	Mmh	8-oxoguanine DNA-glycosylase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-50839749-2	chr15	50839649	50839849	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310481, intron 2 of 5)	(CA)n|Simple_repeat|Simple_repeat	49300.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	1.73373301169172	1.82599317290507	1.30943641399606	1.82668136771545	1.84195484689272	1.83957080696039	1.10216288852313	1.7243576901238	-0.083557112989049	0.93999212639543	0.998431161219273
Merged-chr10-81134449-4	chr10	81134340	81134540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1831.0	NM_010731	16969.0	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-4728408-3	chr15	4728307	4728507	+	782.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016704, intron 1 of 15)	intron (NM_016704, intron 1 of 15)	1197.0	NM_016704	12274.0	Mm.20247	NM_016704	ENSMUSG00000022181	C6	AW111623	complement component 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-58270202-3	chr9	58270063	58270263	+	754.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2B|LTR|ERVL	16999.0	NM_026942	69106.0	Mm.216502	NM_026942	ENSMUSG00000032333	Stoml1	1810015E19Rik|AI847431|SLP1|STORP|UNC24|WPB72	stomatin-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-152805068-4	chr2	152804973	152805173	+	991.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009743, intron 2 of 2)	intron (NM_009743, intron 2 of 2)	23416.0	NR_149254	12048.0	Mm.238213	NM_009743	ENSMUSG00000007659	Bcl2l1	Bcl(X)L|Bcl-XL|Bcl2l|BclX|bcl-x|bcl2-L-1	BCL2-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-17973645-3	chr17	17973515	17973715	+	801.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3157.0	NM_008042	14294.0	Mm.378918	NM_008042	ENSMUSG00000079700	Fpr3	ALX|Fpr-rs1|Fpr-s1|Fprl1|LXA4-R|Lxa4r	formyl peptide receptor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-44002258-4	chr16	44002162	44002362	+	852.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359085, intron 8 of 16)	intron (NM_001359085, intron 8 of 16)	-11590.0	NR_037302	100499519.0		NR_037302	ENSMUSG00000093912	Mir3470b	mmu-mir-3470b	microRNA 3470b	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-108856123-4	chr3	108856033	108856233	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177091, exon 13 of 13)	3' UTR (NM_177091, exon 13 of 13)	-15631.0	NM_011504	20912.0	Mm.316894	NM_011504	ENSMUSG00000027882	Stxbp3	Munc-18c|Stxbp3a|Sxtbp3|Unc18-3	syntaxin binding protein 3	protein-coding	5.42147471747038	5.06102366834609	6.07898122328518	5.92653894287457	4.88236213038889	4.80408891552962	5.98145908680671	5.32763573762673	-0.397521507920354	0.240659289910718	0.736808128664172
Merged-chr8-106535031-2	chr8	106534931	106535131	+	578.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007665, intron 2 of 15)	intron (NM_007665, intron 2 of 15)	24179.0	NM_001037809	12560.0	Mm.4658	NM_007665	ENSMUSG00000061048	Cdh3	AI385538|Cadp|Cdhp|P-cadherin|Pcad	cadherin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-135704399-2	chr7	135704299	135704499	+	579.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081117, exon 9 of 14)	exon (NM_001081117, exon 9 of 14)	11980.0	NM_001081117	17345.0	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-68136101-3	chr10	68135975	68136175	+	725.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023598, intron 4 of 9)	intron (NM_023598, intron 4 of 9)	142651.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-32894455-4	chr18	32894359	32894559	+	681.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13786.0	NR_105779	102465186.0		NR_105779	ENSMUSG00000098252	Mir6361	Gm27612|mmu-mir-6361	microRNA 6361	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-144889859-2	chr4	144889759	144889959	+	578.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2968.0	NM_001172424	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-138731989-1	chr5	138731889	138732089	+	643.0	f1_balb.idr	Intergenic	RMER6BA|LTR|ERVK	-23092.0	NM_030565	80752.0	Mm.320355	NM_030565	ENSMUSG00000025854	Fam20c	C76981|DMP-4|DMP4|GEF-CK|mKIAA4081	family with sequence similarity 20, member C	protein-coding	0.924746013710945	1.06953756062842	1.58981358492926	0.989537317728963	2.08332095821716	3.29969123935529	2.15776089815754	3.53012244949304	4.7566528288229	0.000149913780768096	0.00428253700394195
Merged-chr5-143490169-4	chr5	143490078	143490278	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144915, intron 9 of 14)	intron (NM_144915, intron 9 of 14)	25685.0	NM_144915	231871.0	Mm.469963	NM_144915	ENSMUSG00000039206	Daglb	E330036I19Rik	diacylglycerol lipase, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-11905508-2	chr11	11905408	11905608	+	609.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A2-int|LTR|ERVL-MaLR	-7364.0	NM_001190448	13195.0	Mm.12906	NM_016672	ENSMUSG00000020182	Ddc	Aadc	dopa decarboxylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-66281029-4	chr14	66280933	66281133	+	992.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172498)	promoter-TSS (NM_172498)	19.0	NM_001162366	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-60851111-2	chr18	60851011	60851211	+	796.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2147.0	NM_001198984	21453.0	Mm.486251	NM_011552	ENSMUSG00000024613	Tcof1	AA408847|AW209012|treacle	treacle ribosome biogenesis factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3659433-4	chr4	3659331	3659531	+	938.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040643, intron 3 of 3)	intron (NR_040643, intron 3 of 3)	2925.0	NR_040643	70143.0	Mm.417835	NR_040643	ENSMUSG00000085394	2210414B05Rik	-	RIKEN cDNA 2210414B05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-107657829-3	chr13	107657723	107657923	+	876.42218	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-29574.0	NR_045900	72257.0	Mm.234155	NR_045900	ENSMUSG00000102000	1700006H21Rik	-	RIKEN cDNA 1700006H21 gene	ncRNA	0.677379381210369	1.3512745503563	1.04308427150798	0.865355863948541	1.19185762998081	1.36329627048251	1.05152465783269	0.868951626718613	0.568464296829018	0.683132347981725	0.995882295196263
Merged-chr2-167467557-1	chr2	167467457	167467657	+	692.0	f0_balb.idr	intron (NM_001304542, intron 10 of 15)	intron (NM_001304542, intron 10 of 15)	-25088.0	NM_030743	81018.0	Mm.22225	NM_030743	ENSMUSG00000006418	Rnf114	1110008J21Rik|AI225886|AW549494|Zfp228|Zfp313|Znf228	ring finger protein 114	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-110778012-4	chr12	110777919	110778119	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347428, intron 1 of 2)	intron (NM_001347428, intron 1 of 2)	40087.0	NM_001347428	69641.0	Mm.475762	NM_027149	ENSMUSG00000037957	Wdr20	2310040A13Rik|AI549910|Wdr20a	WD repeat domain 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5015211-3	chr19	5015088	5015288	+	749.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	-8818.0	NM_007854	13340.0	Mm.4930	NM_007854	ENSMUSG00000024891	Slc29a2	Der12|Ent2|Hnp36	solute carrier family 29 (nucleoside transporters), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-69306393-4	chr10	69306276	69306476	+	704.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46536.0	NM_007659	12534.0	Mm.281367	NM_007659	ENSMUSG00000019942	Cdk1	Cdc2|Cdc2a|p34<CDC2>	cyclin-dependent kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141609844-1	chr4	141609744	141609944	+	733.0	f1_balb.idr	Intergenic	Intergenic	-3792.0	NM_133754	74202.0	Mm.490327	NM_133754	ENSMUSG00000006219	Fblim1	2410043F08Rik|Cal|Fblp1|Gt10|migfilin|migfilin(s)	filamin binding LIM protein 1	protein-coding	-0.343406369159506	-0.141673753350068	-0.335056980345896	-0.338200501301275	0.215079630302753	0.160839431686383	-0.334157286364367	-0.337651748762913	2.69732985458195	0.277932119180164	1
Merged-chr12-117586252-4	chr12	117586125	117586325	+	981.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175930, intron 7 of 27)	intron (NM_175930, intron 7 of 27)	69746.0	NM_175930	217944.0	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-26248284-3	chr4	26248184	26248384	+	738.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	98368.0	NM_172865	242362.0	Mm.245602	NM_172865	ENSMUSG00000040520	Manea	4932703L02Rik	mannosidase, endo-alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-32677687-1	chr4	32677587	32677787	+	648.0	f1_balb.idr	intron (NM_001081392, intron 13 of 101)	intron (NM_001081392, intron 13 of 101)	20568.0	NM_001081392	100019.0	Mm.24627	NM_133874	ENSMUSG00000058006	Mdn1	4833432B22Rik|A130070M06|AA958993|D4Abb1e|Gm135	midasin AAA ATPase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-110979121-4	chr12	110978996	110979196	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361917)	promoter-TSS (NM_001361917)	-56.0	NM_001361916	74251.0	Mm.250989	NM_175207	ENSMUSG00000037904	Ankrd9	2500003O20Rik	ankyrin repeat domain 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-106998795-4	chr13	106998693	106998893	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008442, intron 1 of 21)	intron (NM_008442, intron 1 of 21)	23321.0	NM_001145779	16563.0	Mm.355686	NM_008442	ENSMUSG00000021693	Kif2a	C530030B14Rik|Kif2|Kns2|M-kinesin	kinesin family member 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-56831256-3	chr4	56831161	56831361	+	979.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018761, intron 8 of 18)	intron (NM_018761, intron 8 of 18)	-28930.0	NM_026079	230233.0	Mm.282743	NM_026079	ENSMUSG00000028431	Ikbkap	3110040G09Rik|6030413P05|C78473|Elp1|IKAP	inhibitor of kappa light polypeptide enhancer in B cells, kinase complex-associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-6633658-4	chr13	6633572	6633772	+	893.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019703, intron 2 of 21)	intron (NM_019703, intron 2 of 21)	15099.0	NM_019703	56421.0	Mm.273874	NM_019703	ENSMUSG00000021196	Pfkp	1200015H23Rik|9330125N24Rik|ATP-PFK|PFK-C|PFK-P	phosphofructokinase, platelet	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-164792541-4	chr2	164792460	164792660	+	950.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_133240)	TTS (NM_133240)	6539.0	NM_133924	101113.0	Mm.295647	NM_133924	ENSMUSG00000050373	Snx21	5730407K14Rik|AI481716	sorting nexin family member 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-51958553-4	chr13	51958455	51958655	+	800.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	111880.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-58050252-3	chr15	58050123	58050323	+	750.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009572, intron 3 of 3)	intron (NM_009572, intron 3 of 3)	-15929.0	NM_029418	75758.0	Mm.455792	NM_029418	ENSMUSG00000101892	9130401M01Rik	AI849328	RIKEN cDNA 9130401M01 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-63021654-3	chr10	63021551	63021751	+	771.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001079824, intron 1 of 9)	intron (NM_001079824, intron 1 of 9)	-1351.0	NM_001359260	432467.0	Mm.274784	NM_001079824	ENSMUSG00000020069	Hnrnph3	AA693301|AI666703|Hnrph3	heterogeneous nuclear ribonucleoprotein H3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-131083130-2	chr2	131083062	131083262	+	648.5	f0_balb.idr|f1_balb.idr	intron (NM_011426, intron 5 of 20)	intron (NM_011426, intron 5 of 20)	3603.0	NM_011426	20612.0	Mm.1374	NM_011426	ENSMUSG00000027322	Siglec1	Cd169|Siglec-1|Sn	sialic acid binding Ig-like lectin 1, sialoadhesin	protein-coding	-1.26158838883041	-1.23491885943196	-0.932285682414493	-1.253498770181	-0.991415215585255	-1.23270831899588	-1.24281036665307	-1.25199890057848	-0.196493622954895	0.95427149369431	1
Merged-chr15-81021609-4	chr15	81021505	81021705	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001082536, intron 6 of 13)	intron (NM_001082536, intron 6 of 13)	43840.0	NM_134091	105835.0	Mm.274943	NM_134091	ENSMUSG00000042303	Sgsm3	1810012I01Rik|AI428557|BB175482|Cip85|R75178|RUSC3|Rutbc3	small G protein signaling modulator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-81886327-1	chr7	81886227	81886427	+	563.0	f1_balb.idr	intron (NM_013886, intron 5 of 5)	intron (NM_013886, intron 5 of 5)	23640.0	NM_001291282	107769.0	Mm.221412	NM_145375	ENSMUSG00000038623	Tm6sf1	AI428514|BC023123|C630016D09Rik	transmembrane 6 superfamily member 1	protein-coding	-0.539932050888907	-0.529856543424224	-0.533174061784108	-0.030176814153104	-0.177767960284531	-0.529106516010988	-0.361261821069887	-0.535278080910954	-0.0917976909666324	0.972463713067788	1
Merged-chr15-76607658-4	chr15	76607571	76607771	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164173)	promoter-TSS (NM_001164173)	-80.0	NM_001164173	94230.0	Mm.45141	NM_053193	ENSMUSG00000034022	Cpsf1	CPSF160	cleavage and polyadenylation specific factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4057023-2	chr19	4056923	4057123	+	762.75	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001362043)	TTS (NM_001362043)	2424.0	NM_144869	225884.0	Mm.440201	NM_144869	ENSMUSG00000058216	Gstp3	-	glutathione S-transferase pi 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-37352214-2	chr9	37352114	37352314	+	607.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3822.0	NM_001081429	245902.0	Mm.390150	NM_001081429	ENSMUSG00000034303	Ccdc15	A630039F14Rik|D030074L19	coiled-coil domain containing 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-119497218-2	chr8	119497118	119497318	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001009950, intron 3 of 10)	intron (NM_001009950, intron 3 of 10)	4480.0	NM_001009950	234788.0	Mm.302096	NM_001009950	ENSMUSG00000034224	Slc38a8	Gm587	solute carrier family 38, member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-156255155-4	chr4	156255051	156255251	+	947.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355709, intron 1 of 10)	intron (NM_001355709, intron 1 of 10)	191.0	NM_001355709	231004.0	Mm.406833	NM_173736	ENSMUSG00000096351	Samd11	BC026991|mr-s	sterile alpha motif domain containing 11	protein-coding	2.12830057709289	1.87707429418332	2.04508857480812	1.07264259957591	1.55631881928489	1.74329902479143	2.16295127597482	1.07570408315077	-0.426828157797549	0.712735808577831	0.998431161219273
Merged-chr3-139074871-4	chr3	139074746	139074946	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356388, intron 1 of 13)	CpG	355.0	NM_145544	229877.0	Mm.28893	NM_145544	ENSMUSG00000028149	Rap1gds1	BC011279|GDS1	RAP1, GTP-GDP dissociation stimulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-32338563-2	chr6	32338463	32338663	+	823.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175750, intron 3 of 31)	intron (NM_175750, intron 3 of 31)	-172578.0	NR_040277	319849.0	Mm.440860	NR_040277	ENSMUSG00000086763	Plxna4os1	B230378P21Rik	plexin A4, opposite strand 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-61707200-1	chr14	61707100	61707300	+	665.0	f1_balb.idr	Intergenic	Intergenic	-24827.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	2.04435585180318	2.17724307084626	1.49296596952347	1.92781886715611	2.31475697627338	1.91555564848146	1.5019181523774	2.35007759333001	0.369120939710231	0.702713385412398	0.998431161219273
Merged-chr16-62834143-4	chr16	62834053	62834253	+	859.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026577, intron 1 of 9)	L2a|LINE|L2	12887.0	NM_026577	68146.0	Mm.96833	NM_026577	ENSMUSG00000022911	Arl13b	A530097K21Rik|A930014M17Rik|Arl2l1|C530009C10Rik|hnn	ADP-ribosylation factor-like 13B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55556055-2	chr14	55555955	55556155	+	699.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-3974.0	NR_037572	28199.0	Mm.11535	NM_133734	ENSMUSG00000022214	Dcaf11	0710008A13Rik|C76035|D14Ucla1|Dacf11|GLO14|Wdr23	DDB1 and CUL4 associated factor 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-103927498-4	chr3	103927313	103927513	+	687.125	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356557, intron 1 of 6)	intron (NM_001356557, intron 1 of 6)	13293.0	NM_172684	229675.0	Mm.29366	NM_172684	ENSMUSG00000044098	Rsbn1	C230004D03Rik|E330004N01|KDM9|Rosbin|Rsbn|Rsbp|mKIAA3002	rosbin, round spermatid basic protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-149120068-3	chr6	149119942	149120142	+	869.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18362.0	NM_177192	320560.0	Mm.426874	NM_177192	ENSMUSG00000030313	Dennd5b	9330160C06Rik|AI852444|D030011O10Rik|Gm17524	DENN/MADD domain containing 5B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75586433-4	chr11	75586331	75586531	+	988.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1648.0	NM_008850	18738.0	Mm.3128	NM_008850	ENSMUSG00000017781	Pitpna	Pitpn|vb|vibrator	phosphatidylinositol transfer protein, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-88591818-2	chr5	88591718	88591918	+	567.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359208, intron 2 of 13)	Lx5b|LINE|L1	8305.0	NM_001359209	52822.0	Mm.270469	NM_027530	ENSMUSG00000029291	Rufy3	2810428M05Rik|6330416M07Rik|AW455998|AW538594|D5Bwg0860e|Ripx|Rpipx	RUN and FYVE domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-45630208-6	chr17	45630163	45630363	+	875.3472289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001013767)	TTS (NM_001013767)	-28161.0	NM_001177469	653016.0	Mm.45676	NM_001177468	ENSMUSG00000079471	Mymx	EG653016|Esgp|Gm7325|minion|myomerger	myomixer, myoblast fusion factor	protein-coding	0.618458430897334	0.438266399950796	0.0955883602247551	0.0916041045055495	0.0859911231258082	0.445538668715559	0.096729222709258	0.502269850279439	-0.267941392266025	0.897104851235142	1
Merged-chr13-67375199-1	chr13	67375099	67375299	+	858.0	f1_c57bl6.idr	intron (NM_001001186, intron 1 of 3)	intron (NM_001001186, intron 1 of 3)	564.0	NM_001001186	408065.0	Mm.461583	NM_001001186	ENSMUSG00000078995	Zfp456	BC065418|Rslcan-13	zinc finger protein 456	protein-coding	0.797072354456549	2.38825671174466	3.22129044118766	1.72174720496903	0.804725635779345	2.03654809622055	1.18416975127818	0.851565690161235	-2.41710622110065	0.0530275177597226	0.336825252383624
Merged-chr8-3469693-2	chr8	3469593	3469793	+	557.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-1169.0	NM_029598	76406.0	Mm.74996	NM_029598	ENSMUSG00000040340	Tex45	1700019B03Rik	testis expressed 45	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133847968-3	chr4	133847861	133848061	+	989.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001285506, exon 21 of 21)	3' UTR (NM_001285506, exon 21 of 21)	26770.0	NM_001285506	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-121743362-4	chr11	121743262	121743462	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40935.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-77746577-3	chr9	77746464	77746664	+	619.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7971.0	NR_151778	14629.0	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-143832511-4	chr7	143832414	143832614	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007856, intron 2 of 8)	intron (NM_007856, intron 2 of 8)	9347.0	NM_007856	13360.0	Mm.249342	NM_007856	ENSMUSG00000058454	Dhcr7	AA409147	7-dehydrocholesterol reductase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-84770326-4	chr15	84770235	84770435	+	851.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205334, intron 12 of 12)	intron (NM_001205334, intron 12 of 12)	-50069.0	NR_040347	328576.0	Mm.400211	NR_040347	ENSMUSG00000116396	Gm20556	A430075N02	predicted gene, 20556	ncRNA	4.46183919460267	4.57499152620847	3.82029942969336	4.90553535186374	4.36982465429645	5.46444127767127	5.13045796448038	3.54576653731777	0.38169145300109	0.405646627898784	0.89095290927429
Merged-chr6-125138579-2	chr6	125138470	125138670	+	679.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_138747, intron 9 of 15)	intron (NM_138747, intron 9 of 15)	-6654.0	NR_126495	320678.0	Mm.129415	NM_178787	ENSMUSG00000038271	Iffo1	4733401N06Rik|A930037G23Rik|HOM-TES-103|Iffo	intermediate filament family orphan 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-116376199-4	chr9	116376108	116376308	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	187028.0	NR_152204	100043817.0	Mm.404276	NR_152204		Gm4668	-	predicted gene 4668	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46865899-2	chr19	46865799	46865999	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001102471, intron 4 of 6)	intron (NM_001102471, intron 4 of 6)	96452.0	NM_029810	76952.0	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-60753452-1	chr13	60753352	60753552	+	668.0	f1_c57bl6.idr	intron (NM_134062, intron 23 of 26)	B3|SINE|B2	32912.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	0.455231269835697	0.336456811705807	0.645518344767947	0.841773267927825	0.785167712084822	0.337889350949578	0.331506887495146	0.848651659142126	0.111207666730937	0.950445501241345	1
Merged-chr6-148322772-4	chr6	148322681	148322881	+	920.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198967, intron 8 of 19)	intron (NM_198967, intron 8 of 19)	-31875.0	NR_003634	66184.0	Mm.391542	NM_025405	ENSMUSG00000063171	Rps4l	1110033J19Rik|AA407494|Rps4y2	ribosomal protein S4-like	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-155646197-2	chr3	155646097	155646297	+	654.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-330157.0	NR_040553	329780.0	Mm.119000	NR_040553	ENSMUSG00000104553	9330178D15Rik	9330178D15	RIKEN cDNA 9330178D15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-57555912-4	chr16	57555825	57556025	+	987.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177871, intron 1 of 1)	intron (NM_001177871, intron 1 of 1)	6683.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-75728820-2	chr14	75728720	75728920	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177381, intron 13 of 22)	intron (NM_177381, intron 13 of 22)	25673.0	NM_177381	338337.0	Mm.86507	NM_177381	ENSMUSG00000034893	Cog3	E430004N23	component of oligomeric golgi complex 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-109347782-4	chr11	109347654	109347854	+	917.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027883, intron 1 of 1)	intron (NR_027883, intron 1 of 1)	887.0	NR_027883	67927.0	Mm.394490	NR_027883	ENSMUSG00000099630	1700096J18Rik	-	RIKEN cDNA 1700096J18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-89411516-4	chr7	89411427	89411627	+	989.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7161.0	NM_008055	14366.0	Mm.86755	NM_008055	ENSMUSG00000049791	Fzd4	Fz4	frizzled class receptor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-30215097-2	chr17	30214997	30215197	+	796.166626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_027060)	TTS (NM_027060)	181083.0	NR_030688	623169.0	Mm.440508	NR_030688		Gm6402	EG623169	ribosomal protein S17 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-69813397-3	chr14	69813304	69813504	+	858.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7859.0	NM_153514	246710.0	Mm.102367	NM_153514	ENSMUSG00000022075	Rhobtb2	Dbc2|E130206H14Rik|mKIAA0717	Rho-related BTB domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80203730-4	chr7	80203619	80203819	+	960.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360135, intron 1 of 13)	intron (NM_001360135, intron 1 of 13)	5278.0	NM_001360135	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-102651605-1	chr4	102651505	102651705	+	680.0	f1_balb.idr	Intergenic	ORR1A2|LTR|ERVL-MaLR	61762.0	NM_001177981	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-55622189-3	chr13	55622065	55622265	+	921.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007596)	promoter-TSS (NM_007596)	-840.0	NM_007596	12328.0	Mm.2313	NM_007596	ENSMUSG00000021501	Caml	AI385748|Camlg	calcium modulating ligand	protein-coding	-0.130621350400735	-0.099897838670628	-0.109702049798737	-0.117435222816494	0.51424293571936	-0.0977204989446609	1.38100876006355	-0.116073252513252	4.48649197248631	0.0373591195742079	1
Merged-chr6-136714328-4	chr6	136714213	136714413	+	956.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145067, intron 19 of 25)	MIR3|SINE|MIR	-52420.0	NM_025806	66857.0	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	3.85932699903751	4.24977239357194	3.57393694072198	3.86984534362675	3.94814614018398	4.34190637575584	4.56996759795453	4.85967516852569	0.750989489885653	0.0838135115671814	0.443775159657124
Merged-chr6-108450144-2	chr6	108450044	108450244	+	999.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 44 of 61)	intron (NM_010585, intron 44 of 61)	-39599.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114569723-2	chr11	114569623	114569823	+	560.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-98820.0	NM_023372	67671.0	Mm.238817	NM_023372	ENSMUSG00000057322	Rpl38	0610025G13Rik|Rbt|Ts|Tss	ribosomal protein L38	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-67581392-1	chr11	67581292	67581492	+	908.0	f1_balb.idr	intron (NM_008088, intron 1 of 13)	intron (NM_008088, intron 1 of 13)	-5108.0	NM_001109657	14457.0	Mm.40338	NM_008088	ENSMUSG00000033066	Gas7	AW124766|B230343A10Rik|Gas7-cb	growth arrest specific 7	protein-coding	-0.523761998782516	-0.651187922905881	-0.339866792054185	-0.65677550622871	-0.660193740677583	-0.650474017898179	-0.653651417323732	-0.136121184204866	0.426332114201304	0.876064478364092	1
Merged-chr13-24633326-4	chr13	24633212	24633412	+	965.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178658, intron 1 of 13)	(CAAAA)n|Simple_repeat|Simple_repeat	-5336.0	NM_001080381	193385.0	Mm.217319	NM_029679	ENSMUSG00000036006	Ripor2	Fam65b	RHO family interacting cell polarization regulator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4474626-4	chr16	4474492	4474692	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2B|LTR|ERVL	48483.0	NM_001347162	106393.0	Mm.35811	NM_175347	ENSMUSG00000022519	Srl	9830004M20Rik|AW108387|sar	sarcalumenin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132930901-3	chr4	132930797	132930997	+	733.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8346.0	NM_001163792	230789.0	Mm.11473	NM_145553	ENSMUSG00000028878	Fam76a	-	family with sequence similarity 76, member A	protein-coding	3.14753763183282	3.3626136640792	2.87631009298856	3.16345049709915	3.23868180306062	3.30081635271568	1.92275497113131	2.56869872123123	-0.473741066932164	0.489650614169622	0.934238891709291
Merged-chr13-92977634-3	chr13	92977538	92977738	+	891.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20D|LTR|ERVK	-95666.0	NR_036451	100502942.0	Mm.441946	NM_177623	ENSMUSG00000114382	Gm4814	C920025J10|EG218444	predicted gene 4814	ncRNA	5.60928802448713	6.14716532648516	5.85550139087633	6.28089301041986	2.20489469128295	3.3033808950165	1.71426270902424	1.61985698435925	-4.92720478798682	6.18852134078018e-10	1.07091171701943e-07
Merged-chr8-11215434-4	chr8	11215339	11215539	+	905.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009931, intron 40 of 51)	intron (NM_009931, intron 40 of 51)	-97366.0	NM_009932	12827.0	Mm.181021	NM_009932	ENSMUSG00000031503	Col4a2	Col4a-2	collagen, type IV, alpha 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-55807154-4	chr1	55807036	55807236	+	991.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-124105.0	NR_045837	329159.0	Mm.98697	NR_045837	ENSMUSG00000099950	9130227L01Rik	-	RIKEN cDNA 9130227L01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101463105-4	chr11	101463018	101463218	+	994.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012037, intron 1 of 5)	intron (NM_012037, intron 1 of 5)	3081.0	NM_012037	26949.0	Mm.29210	NM_012037	ENSMUSG00000034993	Vat1	VAT-1	vesicle amine transport 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-114869584-3	chr6	114869541	114869741	+	840.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356371, intron 3 of 5)	intron (NM_001356371, intron 3 of 5)	52180.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-13866422-2	chr16	13866322	13866522	+	642.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039533, intron 8 of 22)	intron (NM_001039533, intron 8 of 22)	36723.0	NM_001039533	94184.0	Mm.171484	NM_053181	ENSMUSG00000022680	Pdxdc1	2210010A19Rik|AA415817|Kiaa0251-hp	pyridoxal-dependent decarboxylase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-68277853-4	chr10	68277760	68277960	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023598, intron 2 of 9)	intron (NM_023598, intron 2 of 9)	866.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-83705804-4	chr17	83705685	83705885	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001171053)	promoter-TSS (NM_001171053)	-378.0	NM_001171054	116871.0	Mm.277668	NM_054082	ENSMUSG00000055817	Mta3	1110002J22Rik|mKIAA1266	metastasis associated 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-30622914-2	chr14	30622814	30623014	+	659.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011103, intron 1 of 17)	PB1D9|SINE|Alu	3294.0	NM_011103	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-10873095-4	chr15	10873007	10873207	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44056.0	NR_040357	100502601.0	Mm.399434	NR_040357		Gm19276	-	predicted gene, 19276	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-132477422-4	chr1	132477331	132477531	+	998.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172517)	promoter-TSS (NM_172517)	64.0	NM_172517	213464.0	Mm.132868	NM_172517	ENSMUSG00000026439	Rbbp5	4933411J24Rik|C330016J05	retinoblastoma binding protein 5, histone lysine methyltransferase complex subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-76442324-4	chr10	76442235	76442435	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008787, intron 1 of 41)	CpG	577.0	NM_008787	18541.0	Mm.251794	NM_008787	ENSMUSG00000001151	Pcnt	AW476095|C86676|KEN|Pcnt2|kendrin|m239Asp|m275Asp	pericentrin (kendrin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71693413-4	chr17	71693308	71693508	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177087, intron 6 of 19)	intron (NM_177087, intron 6 of 19)	20147.0	NM_177087	320159.0	Mm.187372	NM_177087	ENSMUSG00000045761	Togaram2	4632412N22Rik|Fam179a	TOG array regulator of axonemal microtubules 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-9731692-3	chr18	9731611	9731811	+	916.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130449, intron 2 of 9)	intron (NM_130449, intron 2 of 9)	24063.0	NM_130449	140792.0	Mm.218571	NM_130449	ENSMUSG00000036103	Colec12	CL-P1|SRCL|Scara4	collectin sub-family member 12	protein-coding	1.27049749329234	2.09669529807066	1.11447101756012	1.09290327582443	2.32112041055166	1.97559722707498	2.15566940960161	2.52142689385664	2.25783911959187	0.040786692524268	0.288423617037034
Merged-chr2-46373136-3	chr2	46373112	46373312	+	754.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	676607.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-60999825-3	chr19	60999746	60999946	+	966.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018869, intron 2 of 15)	intron (NM_018869, intron 2 of 15)	110097.0	NM_018869	14773.0	Mm.279400	NM_018869	ENSMUSG00000003228	Grk5	Gprk5	G protein-coupled receptor kinase 5	protein-coding	0.963812655416127	0.80230741744482	1.17469112712045	0.591514196995958	0.972946546142165	1.1149999822158	1.06983812463515	0.592675540841953	0.256643850114998	0.865669597813254	1
Merged-chr4-137609885-4	chr4	137609772	137609972	+	800.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355588, intron 6 of 26)	(TG)n|Simple_repeat|Simple_repeat	15700.0	NM_130879	170707.0	Mm.218478	NM_130879	ENSMUSG00000043411	Usp48	2810449C13Rik|AI115503|BC021769|D330022K21Rik|Usp31	ubiquitin specific peptidase 48	protein-coding	3.86799028430968	4.45537850089561	4.12132947514889	4.33798791761783	3.16660484415542	2.40742718572568	3.24090481725674	3.13475876512421	-1.73526451859352	0.000820206368442913	0.0165114698130505
Merged-chr17-34984416-2	chr17	34984316	34984516	+	741.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001204274, intron 2 of 4)	B3A|SINE|B2	2286.0	NM_030597	27756.0	Mm.165735	NM_030597	ENSMUSG00000007050	Lsm2	D17H6S56E-2|D17H6S56E2|Dmapl|Dmpkap|G7b|Sm-X5|SmX5|snRNP	LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-10458380-1	chr10	10458280	10458480	+	614.0	f1_balb.idr	intron (NM_001127353, intron 1 of 36)	intron (NM_001127353, intron 1 of 36)	13934.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	0.540811845870467	1.10432951316755	1.28655290858868	0.553835293963704	1.25511030338419	1.1149024654502	0.563799270764648	0.738950602829743	0.14246868825326	0.930026669679289	0.998431161219273
Merged-chr10-100137561-4	chr10	100137456	100137656	+	921.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORSL|DNA|hAT-Tip100	121735.0	NM_013598	17311.0	Mm.45124	NM_013598	ENSMUSG00000019966	Kitl	Clo|Con|Gb|Kitlg|Mgf|SCF|SF|SLF|Sl|blz|contrasted	kit ligand	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25812441-2	chr7	25812341	25812541	+	752.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_028775, intron 2 of 8)	intron (NM_028775, intron 2 of 8)	4089.0	NM_028775	74134.0	Mm.275188	NM_028775	ENSMUSG00000040703	Cyp2s1	1200011C15Rik|AU041727|C79779	cytochrome P450, family 2, subfamily s, polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-155613562-4	chr2	155613459	155613659	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001085378, exon 4 of 42)	exon (NM_001085378, exon 4 of 42)	2316.0	NM_001085378	668940.0	Mm.469980	NM_001085378	ENSMUSG00000074652	Myh7b	Myh14	myosin, heavy chain 7B, cardiac muscle, beta	protein-coding	1.25226116282818	1.56747711520498	1.81510116792159	2.2480516282396	1.25992001045896	2.13769518780211	1.95270467662667	1.48657199669271	-0.0663753230360464	0.951027130967557	0.998431161219273
Merged-chr8-77425004-3	chr8	77424911	77425111	+	805.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030113, intron 5 of 22)	B3A|SINE|B2	-92045.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-83715160-4	chr8	83715092	83715292	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_197982)	promoter-TSS (NM_197982)	15.0	NM_197982	68278.0	Mm.28222	NM_197982	ENSMUSG00000005481	Ddx39	2610307C23Rik|BAT1|DDXL|Ddx39a|URH49	DEAD (Asp-Glu-Ala-Asp) box polypeptide 39	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-57188507-3	chr16	57188512	57188712	+	735.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_026254, intron 11 of 17)	L1_Mus3|LINE|L1	12859.0	NM_001358434	67581.0	Mm.257819	NM_026254	ENSMUSG00000022749	Tbc1d23	4930451A13Rik|AU015720|AU043671|AU043778|D030022P07Rik|W51689	TBC1 domain family, member 23	protein-coding	0.821102471389293	1.19477033550808	1.14265401212864	0.726742891435306	0.94116032483731	0.576105190231639	0.56766765193244	0.998612378592687	-1.04158539834808	0.496835227545327	1
Merged-chr9-85369722-4	chr9	85369652	85369852	+	973.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42602.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	4.22535368079867	4.78419720511554	4.94951185211079	4.28356930627025	5.69921366334111	5.55868721915033	5.76584271831476	5.83118121346806	1.32706581359205	1.48628759257134e-05	0.000636874233416821
Merged-chr17-12999301-3	chr17	12999206	12999406	+	963.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16_Mm|LTR|ERVK	-6767.0	NM_175394	60532.0	Mm.275521	NM_175394	ENSMUSG00000060475	Wtap	2810408K05Rik|9430038B09Rik	Wilms tumour 1-associating protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-108827103-4	chr9	108827006	108827206	+	997.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001359573, exon 1 of 36)	exon (NM_001359573, exon 1 of 36)	1061.0	NM_001359572	107934.0	Mm.39945	NM_080437	ENSMUSG00000023473	Celsr3	Adgrc3|Fmi1|flamingo|mKIAA0812	cadherin, EGF LAG seven-pass G-type receptor 3	protein-coding	1.38730329305246	1.81234187153933	1.38654149202023	1.93554278489332	1.40005557406003	0.857790418612734	0.842406250218895	0.829049846691045	-2.61490994508999	0.0602060919624881	0.36309990136288
Merged-chr6-37067763-2	chr6	37067663	37067863	+	633.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347104, intron 6 of 32)	intron (NM_001347104, intron 6 of 32)	232213.0	NM_001081206	320127.0	Mm.119469	NM_001081206	ENSMUSG00000038665	Dgki	6430604M11Rik|C130010K08Rik	diacylglycerol kinase, iota	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-89415985-4	chr6	89415856	89416056	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167736, intron 5 of 6)	L2b|LINE|L2	-53343.0	NM_008881	18844.0	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-138442316-1	chr3	138442216	138442416	+	788.0	f0_c57.idr	promoter-TSS (NM_007410)	promoter-TSS (NM_007410)	-777.0	NM_007410	11532.0	Mm.3874	NM_007410	ENSMUSG00000028138	Adh5	Adh-5|Adh3|GSNOR	alcohol dehydrogenase 5 (class III), chi polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-81781291-4	chr12	81781170	81781370	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177395)	promoter-TSS (NM_177395)	-100.0	NM_001174107	338372.0	Mm.35284	NM_177395	ENSMUSG00000042724	Map3k9	E130314H24Rik|Mlk1|Prke1	mitogen-activated protein kinase kinase kinase 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-25356364-4	chr2	25356264	25356464	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031843)	promoter-TSS (NM_031843)	-32.0	NM_031843	83768.0	Mm.21440	NM_031843	ENSMUSG00000026958	Dpp7	DPPII|Dpp2|QPP	dipeptidylpeptidase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44508068-2	chr9	44507968	44508168	+	668.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357490, intron 6 of 7)	intron (NM_001357490, intron 6 of 7)	8932.0	NM_030256	80288.0	Mm.370270	NM_030256	ENSMUSG00000063382	Bcl9l	B9L|BC003321|BCL9-2|DLNB11	B cell CLL/lymphoma 9-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-102638269-4	chr2	102638152	102638352	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173749, intron 8 of 10)	intron (NM_173749, intron 8 of 10)	-20437.0	NM_001077514	20511.0	Mm.267547	NM_011393	ENSMUSG00000005089	Slc1a2	1700091C19Rik|2900019G14Rik|AI159670|Eaat2|GLT-1|GLT1|MGLT1	solute carrier family 1 (glial high affinity glutamate transporter), member 2	protein-coding	4.25941008033013	4.47845857111852	4.391863328337	4.27625894939235	3.99282483986247	4.32946782727161	4.47574182398595	4.66036011344123	0.0422403037222013	0.914003986892118	0.998431161219273
Merged-chr1-152913848-4	chr1	152913761	152913961	+	883.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11215.0	NM_001005507	226517.0	Mm.270775	NM_001005507	ENSMUSG00000042772	Smg7	9430023P16Rik|mKIAA0250	Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-67053038-2	chr17	67052938	67053138	+	780.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 5 of 32)	intron (NM_001357625, intron 5 of 32)	-26803.0	NR_049205	100885844.0		NR_049205	ENSMUSG00000093508	Mir5709	Gm22041|mir-5709|mmu-mir-5709	microRNA 5709	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-69663274-4	chr18	69663199	69663399	+	890.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 15 of 19)	MIR3|SINE|MIR	-262260.0	NM_201362	381175.0	Mm.266831	NM_201362	ENSMUSG00000038903	Ccdc68	BC046343	coiled-coil domain containing 68	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5647360-2	chr19	5647260	5647460	+	579.625	f1_balb.idr|f1_c57bl6.idr	exon (NM_009045, exon 11 of 11)	exon (NM_009045, exon 11 of 11)	9870.0	NM_009045	19697.0	Mm.249966	NM_009045	ENSMUSG00000024927	Rela	p65	v-rel reticuloendotheliosis viral oncogene homolog A (avian)	protein-coding	1.01174312856669	0.197136948965574	0.189771012372105	0.184053158313545	0.694601701592315	0.862222892791159	0.191399916010165	0.185054313750539	0.32471421983353	0.876002631284387	1
Merged-chr16-36708175-5	chr16	36708065	36708265	+	614.200012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285788, intron 1 of 7)	intron (NM_001285788, intron 1 of 7)	14187.0	NM_001285791	106347.0	Mm.17807	NM_134109	ENSMUSG00000022900	Ildr1	AU041483|AU044638	immunoglobulin-like domain containing receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-11034587-4	chr16	11034487	11034687	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25689.0	NR_040518	100043147.0	Mm.489001	NR_040518	ENSMUSG00000097056	Gm4262	-	predicted gene 4262	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45389138-3	chr7	45389046	45389246	+	918.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_126539, intron 4 of 9)	intron (NR_126539, intron 4 of 9)	6596.0	NM_009224	20637.0	Mm.216386	NM_009224	ENSMUSG00000063511	Snrnp70	2700022N21Rik|3200002N22Rik|AI325098|R74807|Rnu1p70|Rnulp70|Snrp70|Srnp70|U1-70|U1-70K	small nuclear ribonucleoprotein 70 (U1)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-165751364-4	chr1	165751260	165751460	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12398.0	NR_149310	433375.0	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-105483540-3	chr14	105483443	105483643	+	727.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15245.0	NR_045921	74864.0	Mm.159344	NR_045921	ENSMUSG00000022116	4930449E01Rik	-	RIKEN cDNA 4930449E01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-33248761-4	chr14	33248673	33248873	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153800, intron 2 of 10)	intron (NM_153800, intron 2 of 10)	31950.0	NM_153800	239027.0	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-113470351-4	chr13	113470287	113470487	+	794.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045501, intron 3 of 6)	(TC)n|Simple_repeat|Simple_repeat	32457.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81070013-4	chr10	81069913	81070113	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022653)	promoter-TSS (NM_022653)	-70.0	NM_022653	50492.0	Mm.26995	NM_022653	ENSMUSG00000004929	Thop1	AI131655|AI327041|EP24.15	thimet oligopeptidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-4046830-2	chr10	4046730	4046930	+	859.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001170785, intron 17 of 27)	intron (NM_001170785, intron 17 of 27)	73755.0	NM_172308	270685.0	Mm.184752	NM_172308	ENSMUSG00000040675	Mthfd1l	2410004L15Rik|AI647056|Fthfsdc1	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150219669-2	chr4	150219569	150219769	+	668.299988	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-17528.0	NM_023119	13806.0	Mm.70666	NM_023119	ENSMUSG00000063524	Eno1	0610008I15|AL022784|Eno-1|MBP-1	enolase 1, alpha non-neuron	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-118861556-2	chr2	118861456	118861656	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019826)	promoter-TSS (NM_019826)	-444.0	NM_019826	56357.0	Mm.6635	NM_019826	ENSMUSG00000027332	Ivd	1300016K07Rik|6720455E18Rik|AI463340	isovaleryl coenzyme A dehydrogenase	protein-coding	0.739529192170079	1.63130174208916	0.770749429205571	0.759182596025819	1.6960771337228	1.64586904239214	1.32843755119824	1.13670079836532	1.66728195696645	0.246137088059971	0.745369203065001
Merged-chr7-143062048-2	chr7	143061948	143062148	+	626.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_133655, intron 1 of 7)	ID_B1|SINE|B4	-7320.0	NM_020285	56844.0	Mm.139675	NM_020285	ENSMUSG00000045752	Tssc4	AA241958|ESTM671070	tumor-suppressing subchromosomal transferable fragment 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-43814407-7	chr1	43814317	43814517	+	872.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026430, intron 1 of 14)	intron (NM_026430, intron 1 of 14)	13291.0	NM_026430	67883.0	Mm.387202	NM_026430	ENSMUSG00000057363	Uxs1	1600025I13Rik|AI451869|AI649125|AW550562	UDP-glucuronate decarboxylase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-4208948-2	chr7	4208848	4209048	+	759.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28806.0	NM_001081239	232801.0	Mm.258061	NM_001081239	ENSMUSG00000070873	Lilra5	E030017K20|EG232801|Gm4878|Lilrc1	leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-134698719-2	chr1	134698619	134698819	+	722.133301	f1_balb.idr|f1_c57bl6.idr	intron (NM_009307, intron 2 of 9)	intron (NM_009307, intron 2 of 9)	-10581.0	NM_001355726	20980.0	Mm.5102	NM_009307	ENSMUSG00000026452	Syt2	IP4BP|R74640|mKIAA4194|sytII	synaptotagmin II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-49713593-1	chr11	49713493	49713693	+	680.5	f0_balb.idr	promoter-TSS (NM_212484)	promoter-TSS (NM_212484)	-871.0	NM_212484	104625.0	Mm.247113	NM_212484	ENSMUSG00000020362	Cnot6	CCR4	CCR4-NOT transcription complex, subunit 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-45848226-4	chr4	45848076	45848276	+	881.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028788)	promoter-TSS (NM_028788)	-640.0	NM_001305421	74152.0	Mm.63645	NM_028788	ENSMUSG00000028327	Stra6l	1300002K09Rik|Rbpr2	STRA6-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-31004384-4	chr5	31004292	31004492	+	905.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35715.0	NM_053085	69852.0	Mm.57874	NM_053085	ENSMUSG00000006642	Tcf23	2010002O16Rik|Out|bHLHa24	transcription factor 23	protein-coding	-0.902682857598014	-0.887932166885014	-0.708083751938422	-0.898469308313368	-0.90205553778598	-0.885088203308773	-0.181452545560865	-0.898026388631305	2.17390230862527	0.470410034150012	1
Merged-chr4-141958357-2	chr4	141958257	141958457	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177868, intron 9 of 31)	intron (NM_177868, intron 9 of 31)	-24635.0	NR_040672	545691.0	Mm.332015	NR_040672	ENSMUSG00000085424	Fhad1os1	Gm13037	forkhead-associated (FHA) phosphopeptide binding domain 1, opposite strand 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3882013-2	chr19	3881913	3882113	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271496, intron 3 of 11)	intron (NM_001271496, intron 3 of 11)	23217.0	NM_016921	27060.0	Mm.271689	NM_016921	ENSMUSG00000001750	Tcirg1	ATP6N1C|ATP6a3|Atp6i|OC-116|OPTB1|Stv1|TIRC7|Vph1|oc	T cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 protein A3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-19954687-3	chr11	19954621	19954821	+	621.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033523, intron 1 of 5)	intron (NM_033523, intron 1 of 5)	30279.0	NM_033523	114716.0	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-12572815-3	chr19	12572726	12572926	+	773.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346545)	promoter-TSS (NM_001346545)	-684.0	NM_001346545	107373.0	Mm.1643	NM_026640	ENSMUSG00000024691	Fam111a	4632417K18Rik|AW413625	family with sequence similarity 111, member A	protein-coding	1.63851330349688	2.14120097418903	1.39964138167951	2.62534266456505	1.31168823557392	1.1812305409858	2.20054087885942	2.56947050731879	-0.203610673485684	0.850907467186993	0.998431161219273
Merged-chr1-136600784-2	chr1	136600687	136600887	+	720.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24114.0	NM_177643	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-138258567-3	chr2	138258465	138258665	+	838.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025431, intron 1 of 4)	intron (NM_001025431, intron 1 of 4)	1981.0	NM_001025431	228662.0	Mm.153405	NM_145534	ENSMUSG00000062098	Btbd3	mKIAA0952	BTB (POZ) domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-118119807-1	chr10	118119707	118119907	+	798.0	f0_balb.idr	Intergenic	Intergenic	-21980.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-76411015-2	chr11	76410915	76411115	+	947.333374	f1_balb.idr|f1_c57bl6.idr	intron (NR_111896, intron 2 of 3)	intron (NR_111896, intron 2 of 3)	3872.0	NM_019818	56322.0	Mm.18803	NM_019818	ENSMUSG00000020843	Timm22	Tim22	translocase of inner mitochondrial membrane 22	protein-coding	-1.53362919331644	-1.50201671710775	-1.51157659084044	-1.08120497225282	-1.53141005593807	-1.49994505258991	-1.50941244497383	-1.51802371459528	-1.94474658522739	0.577200604274218	1
Merged-chr5-135764857-1	chr5	135764757	135764957	+	554.0	f1_balb.idr	intron (NM_001289557, intron 3 of 6)	PB1D9|SINE|Alu	13444.0	NM_001289554	76571.0	Mm.247666	NM_029659	ENSMUSG00000019178	Styxl1	1700011C14Rik|Dusp24|Mkstyx	serine/threonine/tyrosine interacting-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-114660138-3	chr6	114660044	114660244	+	784.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253718, intron 2 of 19)	intron (NM_001253718, intron 2 of 19)	17047.0	NM_001253718	74244.0	Mm.275332	NM_028835	ENSMUSG00000030314	Atg7	1810013K23Rik|Agp7|Apg7l|Atg7l|Gm21553	autophagy related 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-112833707-2	chr12	112833615	112833815	+	771.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4194.0	NM_001359234	71963.0	Mm.313185	NM_028023	ENSMUSG00000047832	Cdca4	2410018C03Rik|HEPP|SEI-3	cell division cycle associated 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30169820-4	chr7	30169740	30169940	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357557)	promoter-TSS (NM_001357557)	-82.0	NM_001033540	330503.0	Mm.434058	NM_001033540	ENSMUSG00000066647	Gm5113	B430201F14|EG330503	predicted gene 5113	protein-coding	1.51571343039498	1.8283671085231	2.02261117513093	1.72670275078949	2.22471446009408	1.84088259358231	1.91898375268315	1.73466778944913	0.489973923071255	0.615515149665949	0.977352076822579
Merged-chr9-108068048-3	chr9	108067961	108068161	+	869.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311152, intron 15 of 38)	intron (NM_001311152, intron 15 of 38)	11240.0	NM_001311152	84585.0	Mm.379272	NM_032543	ENSMUSG00000041528	Rnf123	BC003945|Kpc1	ring finger protein 123	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-110871190-3	chr9	110871054	110871254	+	810.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146260, intron 3 of 5)	intron (NM_146260, intron 3 of 5)	8929.0	NM_146260	20776.0	Mm.390229	NM_146260	ENSMUSG00000049555	Tmie	5131400L21Rik|Mm.87012|sr	transmembrane inner ear	protein-coding	1.00589960040699	1.07548537872295	2.01964856368514	1.25748967286084	1.95987327422526	2.21870504877677	1.9243981753164	1.86108033251296	1.7766282439598	0.127397485336244	0.558667773780797
Merged-chr4-137660599-1	chr4	137660499	137660699	+	676.0	f1_balb.idr	Intergenic	Intergenic	-4127.0	NM_029563	110351.0	Mm.180763	NM_029563	ENSMUSG00000041351	Rap1gap	1300019I11Rik|2310004O14Rik|AI427470|ARPP-90|Gap|Rap1GAP1|Rap1ga1	Rap1 GTPase-activating protein	protein-coding	0.380415343451867	1.45318388269814	0.410307210574375	0.399280495046776	0.586052158849985	0.427346510890912	0.851213218348322	1.81375110419634	1.08584638026163	0.525447929833735	0.948340152465298
Merged-chr5-23978752-3	chr5	23978656	23978856	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053090, intron 10 of 10)	intron (NM_053090, intron 10 of 10)	51556.0	NM_001310471	84652.0	Mm.304976	NM_053090	ENSMUSG00000028995	Fam126a	AB030242|Drctnnb1a	family with sequence similarity 126, member A	protein-coding	4.07448288801316	3.19797268400669	5.04721713008196	5.34486342530822	5.48788451408826	4.5984613500226	5.25055640829981	5.31492666845396	0.656749754153593	0.134269402525565	0.571939985148542
Merged-chr3-19369203-1	chr3	19369103	19369303	+	653.0	f0_balb.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-57881.0	NM_001122759	18583.0	Mm.355614	NM_008802	ENSMUSG00000069094	Pde7a	AU015378|AW047537	phosphodiesterase 7A	protein-coding	-0.018428299456068	-0.412147025029377	-0.417071563349878	-0.420888922836122	-0.42631078946548	-0.411040519363768	0.503638071730306	-0.420220894436017	1.6114860500234	0.542684004153087	1
Merged-chr8-4323992-2	chr8	4323892	4324092	+	895.6999509999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_010485, intron 1 of 5)	MER20|DNA|hAT-Charlie	1108.0	NM_010485	15568.0	Mm.119162	NM_010485	ENSMUSG00000040028	Elavl1	2410055N02Rik|HUR|Hua|W91709	ELAV (embryonic lethal, abnormal vision)-like 1 (Hu antigen R)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-87634346-4	chr1	87634214	87634414	+	884.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110192, intron 1 of 26)	intron (NM_001110192, intron 1 of 26)	14002.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-100410247-2	chr6	100410147	100410347	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F|LTR|ERVL-MaLR	-117153.0	NR_040525	73395.0	Mm.69413	NR_040525	ENSMUSG00000101553	1700049E22Rik	-	RIKEN cDNA 1700049E22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-138999076-2	chr5	138998976	138999176	+	860.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4123.0	NM_008808	18590.0	Mm.2675	NM_008808	ENSMUSG00000025856	Pdgfa	-	platelet derived growth factor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-155761141-4	chr4	155761026	155761226	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_179203)	promoter-TSS (NM_179203)	-28.0	NM_179203	108888.0	Mm.241152	NM_179203	ENSMUSG00000029036	Atad3a	2400004H09Rik|Atad3|Tob3|mKIAA1273	ATPase family, AAA domain containing 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100494721-4	chr7	100494640	100494840	+	990.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011671, intron 2 of 7)	intron (NM_011671, intron 2 of 7)	1382.0	NM_011671	22228.0	Mm.171378	NM_011671	ENSMUSG00000033685	Ucp2	Slc25a8|UCP 2|UCPH	uncoupling protein 2 (mitochondrial, proton carrier)	protein-coding	2.79805844527888	3.59727376641407	3.32357247173369	3.38387452002154	3.87462160317917	1.72019577341147	3.16905289161624	2.86282049856468	-0.270102788383672	0.701484906348968	0.998431161219273
Merged-chr9-5274542-4	chr9	5274446	5274646	+	830.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	-23971.0	NM_009807	12362.0	Mm.1051	NM_009807	ENSMUSG00000025888	Casp1	ICE|Il1bc	caspase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-94601842-4	chr8	94601749	94601949	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026274)	promoter-TSS (NM_026274)	-92.0	NM_001359093	67610.0	Mm.109074	NM_026274	ENSMUSG00000050079	Rspry1	4930470D19Rik|AI608258	ring finger and SPRY domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-96660924-6	chr15	96660782	96660982	+	949.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-17969.0	NM_001166458	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-99187698-3	chr6	99187615	99187815	+	646.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001197321, intron 2 of 17)	intron (NM_001197321, intron 2 of 17)	78800.0	NM_001197321	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3344919-4	chr12	3344818	3345018	+	994.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20214.0	NM_008445	16570.0	Mm.7688	NM_008445	ENSMUSG00000020668	Kif3c	mKIAA4058	kinesin family member 3C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-49436716-3	chr17	49436634	49436834	+	751.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020042, intron 3 of 10)	intron (NM_020042, intron 3 of 10)	8370.0	NM_020042	56738.0	Mm.22256	NM_020042	ENSMUSG00000064120	Mocs1	3110045D15Rik|AI043170|AW536397	molybdenum cofactor synthesis 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-101829410-2	chr5	101829310	101829510	+	984.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	64280.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-24245563-1	chr14	24245463	24245663	+	605.0	f0_balb.idr	5' UTR (NM_027726, exon 1 of 31)	5' UTR (NM_027726, exon 1 of 31)	357.0	NM_001163513	71228.0	Mm.68971	NM_027726	ENSMUSG00000021782	Dlg5	4933429D20Rik|T25557|mKIAA0583	discs large MAGUK scaffold protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6351660-2	chr19	6351560	6351760	+	576.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001291787, exon 27 of 32)	exon (NM_001291787, exon 27 of 32)	5180.0	NR_105955	102465598.0		NR_105955	ENSMUSG00000099230	Mir6989	Gm27885|mmu-mir-6989	microRNA 6989	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-25796665-2	chr17	25796565	25796765	+	620.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133719, intron 1 of 3)	CpG	380.0	NM_133719	70083.0	Mm.41925	NM_133719	ENSMUSG00000002274	Metrn	1810034B16Rik|EyeLinc16|Hyrac	meteorin, glial cell differentiation regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114792615-2	chr11	114792515	114792715	+	868.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028055, intron 2 of 2)	B3A|SINE|B2	3277.0	NM_028055	72014.0	Mm.38347	NM_028055	ENSMUSG00000000202	Btbd17	1500005I02Rik|Tango10a	BTB (POZ) domain containing 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-76589004-1	chr5	76588904	76589104	+	1000.0	f0_c57.idr	Intergenic	CpG	-2710.0	NM_199032	381644.0	Mm.332452	NM_199032	ENSMUSG00000036403	Cep135	BC062951|Cep4|Gm1044	centrosomal protein 135	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-54013312-3	chr3	54013204	54013404	+	573.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6B|LTR|ERVK	-142753.0	NM_001253683	22066.0	Mm.10100	NM_016984	ENSMUSG00000027748	Trpc4	CCE1|STRPC4|Trp4|Trrp4	transient receptor potential cation channel, subfamily C, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-61099665-2	chr10	61099565	61099765	+	699.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001316674, exon 15 of 15)	3' UTR (NM_001316674, exon 15 of 15)	10334.0	NM_025273	13180.0	Mm.39473	NM_025273	ENSMUSG00000020098	Pcbd1	Dcoh|Pcbd|Pcd|Phs	pterin 4 alpha carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31214985-2	chr14	31214885	31215085	+	665.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2888.0	NM_001025379	218877.0	Mm.27812	NM_001025379	ENSMUSG00000021904	Sema3g	AK129018	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3G	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-32277493-2	chr19	32277393	32277593	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001168525, intron 2 of 9)	intron (NM_001168525, intron 2 of 9)	-66480.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83660818-2	chr11	83660718	83660918	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1766.0	NM_013652	20303.0	Mm.244263	NM_013652	ENSMUSG00000018930	Ccl4	AT744.1|Act-2|MIP-1B|Mip1b|Scya4	chemokine (C-C motif) ligand 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124473889-2	chr5	124473789	124473989	+	735.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030259, intron 1 of 3)	RSINE1|SINE|B4	4346.0	NM_030259	80291.0	Mm.425280	NM_030259	ENSMUSG00000029401	Rilpl2	-	Rab interacting lysosomal protein-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31365592-2	chr14	31365492	31365692	+	927.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009796, intron 15 of 20)	intron (NM_009796, intron 15 of 20)	28954.0	NM_009796	12339.0	Mm.201535	NM_009796	ENSMUSG00000021893	Capn7	AU022319|PalBH	calpain 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-54965398-4	chr11	54965307	54965507	+	973.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-2467.0	NM_001271455	57783.0	Mm.259671	NM_021327	ENSMUSG00000020400	Tnip1	ABIN|ABIN-1|ABIN1|AU018810|Naf1|Nef|VAN	TNFAIP3 interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141473994-1	chr4	141473894	141474094	+	701.0	f1_balb.idr	exon (NM_019763, exon 12 of 16)	exon (NM_019763, exon 12 of 16)	29321.0	NM_009541	22642.0	Mm.389590	NM_009541	ENSMUSG00000006215	Zbtb17	AA589413|Lp-1|Miz1|Zfp100|mZ13	zinc finger and BTB domain containing 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-124312650-4	chr9	124312544	124312744	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001243117)	promoter-TSS (NM_001243117)	50.0	NM_001243118	630836.0	Mm.458553	NM_001243117	ENSMUSG00000074829	2010315B03Rik	BC029716	RIKEN cDNA 2010315B03 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-58329443-1	chr11	58329343	58329543	+	630.0	f1_balb.idr	intron (NM_001256520, intron 1 of 2)	RLTR19|LTR|ERVK	896.0	NM_001256520	319475.0	Mm.72124	NM_178761	ENSMUSG00000049755	Zfp672	4930488P06Rik|4930511N19Rik|Znf672	zinc finger protein 672	protein-coding	-0.218815787914023	-0.153449184648399	-0.173180455667592	-0.189451809748074	0.502264235418055	1.95352430001523	-0.168703008926179	-0.186538021194155	5.45918829278311	0.107648802467338	0.513338286288941
Merged-chr9-108350565-2	chr9	108350465	108350665	+	564.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011678, intron 1 of 21)	intron (NM_011678, intron 1 of 21)	2734.0	NM_011678	22258.0	Mm.3974	NM_011678	ENSMUSG00000032612	Usp4	F730026I20Rik|Unp|mKIAA4155	ubiquitin specific peptidase 4 (proto-oncogene)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45008320-2	chr7	45008220	45008420	+	564.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001008422, exon 7 of 11)	exon (NM_001008422, exon 7 of 11)	4167.0	NR_106021	102466218.0		NR_106021	ENSMUSG00000098839	Mir7054	Gm27557|mmu-mir-7054	microRNA 7054	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-3583448-4	chr15	3583326	3583526	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010284)	promoter-TSS (NM_010284)	-74.0	NM_010284	14600.0	Mm.3986	NM_010284	ENSMUSG00000055737	Ghr	GHBP|GHR/BP	growth hormone receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-54468855-4	chr13	54468768	54468968	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028597)	promoter-TSS (NM_028597)	-28.0	NM_028597	73666.0	Mm.292487	NM_028597	ENSMUSG00000025872	Thoc3	2410044K02Rik|AL033344	THO complex 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-33901167-3	chr7	33901109	33901309	+	740.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43776.0	NM_178308	110187.0	Mm.155750	NM_178308	ENSMUSG00000066586	Scgb2b26	Abpbg26|Abpbg4|Abpg|C2d|Scgb2b4	secretoglobin, family 2B, member 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-94601252-2	chr16	94601152	94601352	+	632.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113389, intron 1 of 11)	intron (NM_001113389, intron 1 of 11)	-10167.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-86302568-1	chr17	86302468	86302668	+	666.0	f1_balb.idr	intron (NM_011104, intron 1 of 14)	intron (NM_011104, intron 1 of 14)	-15390.0	NR_045435	72104.0	Mm.443401	NR_045435	ENSMUSG00000100738	2010106C02Rik	-	RIKEN cDNA 2010106C02 gene	ncRNA	-0.934764354340856	-0.918725264263529	-0.230181201566661	-0.757443490521554	-0.934160331252074	-0.91594557163566	-0.927566377553458	-0.930279335768362	-3.0584404995843	0.308387178445416	1
Merged-chr6-83450856-4	chr6	83450748	83450948	+	892.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347313, intron 2 of 11)	intron (NM_001347313, intron 2 of 11)	5544.0	NM_001347313	194388.0	Mm.211030	NM_183138	ENSMUSG00000034832	Tet3	B430006D22Rik|BC037432|D230004J03Rik	tet methylcytosine dioxygenase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-148632261-1	chr4	148632161	148632361	+	637.0	f0_balb.idr	Intergenic	B3A|SINE|B2	-5265.0	NM_001003899	230908.0	Mm.22453	NM_145556	ENSMUSG00000041459	Tardbp	1190002A23Rik|C85084|TDP-43|Tdp43	TAR DNA binding protein	protein-coding	-1.26687315729308	-1.51144556179868	-1.52074032698608	-1.52837532385482	-1.39377469321613	-1.50943134740853	-1.5186361958831	-1.52700866306571	-0.563662181339258	0.873093626595385	1
Merged-chr8-70042788-4	chr8	70042687	70042887	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001167939)	promoter-TSS (NM_001167939)	-26.0	NM_027481	70616.0	Mm.17665	NM_027481	ENSMUSG00000011306	Sugp1	5730496N02Rik|Sf4	SURP and G patch domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-55525669-1	chr16	55525569	55525769	+	582.0	f0_balb.idr	Intergenic	Intergenic	30938.0	NR_039578	100628589.0		NR_039578	ENSMUSG00000093292	Mir5118	mmu-mir-5118|mu-mir-5118	microRNA 5118	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-106887234-4	chr9	106887146	106887346	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175402)	promoter-TSS (NM_175402)	-246.0	NM_175402	109095.0	Mm.431589	NM_175402	ENSMUSG00000074102	Rbm15b	1810017N16Rik	RNA binding motif protein 15B	protein-coding	7.07938417127528	6.87552396108245	6.36198786962931	6.94894634315188	6.96893080146	6.63671243951703	6.45034942126029	7.16054018029802	-0.00900738088762213	0.966229357786419	0.998431161219273
Merged-chr17-47766805-4	chr17	47766705	47766905	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161723, intron 1 of 8)	intron (NM_001161723, intron 1 of 8)	-18939.0	NM_011549	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	2.89902752131132	2.55340153536492	2.8498792468367	2.87197702289328	2.29479636946257	3.42871363275903	2.97650734869133	3.22257023153245	0.439243988820915	0.515866175503625	0.947402641287243
Merged-chr14-33254588-2	chr14	33254488	33254688	+	697.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153800, intron 2 of 10)	B1_Mm|SINE|Alu	37765.0	NM_153800	239027.0	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-76669968-2	chr12	76669868	76670068	+	601.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013675, intron 1 of 35)	MIR|SINE|MIR	40579.0	NM_013675	20741.0	Mm.32881	NM_013675	ENSMUSG00000021061	Sptb	AI842465|D330027P03Rik|Gm1301|Spnb-1|Spnb1|ja|jaundiced|mKIAA4219	spectrin beta, erythrocytic	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-15945385-4	chr4	15945258	15945458	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_026172, exon 1 of 10)	5' UTR (NM_026172, exon 1 of 10)	149.0	NM_026172	67460.0	Mm.393293	NM_026172	ENSMUSG00000028223	Decr1	1200012F07Rik|Decr|Nadph	2,4-dienoyl CoA reductase 1, mitochondrial	protein-coding	0.232276095266355	-0.0223272353821237	0.651294006441638	-0.0321492059829415	0.623724241054571	-0.0210792627706134	-0.0266455350483047	-0.0314009758091179	-0.445796579217081	0.843476189415644	1
Merged-chr3-69223129-4	chr3	69223006	69223206	+	989.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_027843, exon 1 of 1)	3' UTR (NM_027843, exon 1 of 1)	687.0	NM_027843	71619.0	Mm.98122	NM_027843	ENSMUSG00000098207	Arl14	9130014L17Rik|Arf7	ADP-ribosylation factor-like 14	protein-coding	4.0437518233271	3.88497960883453	3.67782864493834	4.29011311829919	3.63350262367268	4.42070449298999	3.86048709066625	3.10814806476385	-0.232282778118741	0.637661516190124	0.982513515234679
Merged-chr18-57085771-4	chr18	57085621	57085821	+	948.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47369.0	NM_001001979	70417.0	Mm.297863	NM_001001979	ENSMUSG00000024593	Megf10	3000002B06Rik|Gm331	multiple EGF-like-domains 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71382088-4	chr8	71381980	71382180	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010150)	promoter-TSS (NM_010150)	-128.0	NM_010150	13864.0	Mm.28989	NM_010150	ENSMUSG00000002393	Nr2f6	AV090102|COUP-TF3|EAR2|Erbal2	nuclear receptor subfamily 2, group F, member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-54605194-2	chr9	54605094	54605294	+	547.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_029573)	TTS (NM_029573)	18683.0	NM_029573	67834.0	Mm.279195	NM_029573	ENSMUSG00000032279	Idh3a	1110003P10Rik|1500012E04Rik|AA407078|AI316514	isocitrate dehydrogenase 3 (NAD+) alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127694888-2	chr10	127694788	127694988	+	611.666626	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_173732, exon 7 of 7)	3' UTR (NM_173732, exon 7 of 7)	-10368.0	NM_001081219	432516.0	Mm.90450	NM_001081219	ENSMUSG00000025401	Myo1a	BBM-I|Myhl	myosin IA	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78878360-3	chr15	78878253	78878453	+	946.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145929, intron 1 of 16)	intron (NM_145929, intron 1 of 16)	1163.0	NM_145929	106039.0	Mm.251331	NM_145929	ENSMUSG00000033128	Gga1	4930406E12Rik|AU016030|AW209092	golgi associated, gamma adaptin ear containing, ARF binding protein 1	protein-coding	1.41279603868329	1.4951043601457	1.01020206322002	1.27623885428137	1.32819374959628	0.828044042759397	0.815645424541211	1.60267664435217	-0.443153645832672	0.744887481719287	0.998431161219273
Merged-chr14-75130429-4	chr14	75130397	75130597	+	982.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001247984)	promoter-TSS (NM_001247984)	386.0	NM_027581	70859.0	Mm.320289	NM_027581	ENSMUSG00000021997	Lrrc63	4921509B22Rik	leucine rich repeat containing 63	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-57613995-2	chr16	57613895	57614095	+	569.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-7128.0	NM_025599	66497.0	Mm.425976	NM_025599	ENSMUSG00000022748	Cmss1	1110001A06Rik|2610528E23Rik|4930572F24Rik|AV099812|AV122629	cms small ribosomal subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101160150-4	chr15	101160008	101160208	+	824.1875	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13964.0	NM_007395	11479.0	Mm.308467	NM_007395	ENSMUSG00000000532	Acvr1b	6820432J04|ALK-4|ActR-IB|ActRIB|Acvrlk4|Alk4|SKR2	activin A receptor, type 1B	protein-coding	2.00605580263337	2.48427486108262	2.58262667793221	2.22763332153566	1.61564883949584	2.50307821411728	1.28527740418917	1.85582551856681	-1.09932885049923	0.250837959400943	0.748769407088865
Merged-chr3-19201509-4	chr3	19201410	19201610	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356295, intron 2 of 7)	RSINE1|SINE|B4	13215.0	NM_001356295	67472.0	Mm.45125	NM_026182	ENSMUSG00000027601	Mtfr1	1300002C08Rik|1700080D04Rik|2810026O10Rik|4930579E05Rik|Chppr|Fam54a2	mitochondrial fission regulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-84818837-4	chr11	84818731	84818931	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145433, intron 1 of 4)	CpG	684.0	NM_145433	217038.0	Mm.280825	NM_145433	ENSMUSG00000018405	Mrm1	A530065E19Rik	mitochondrial rRNA methyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-26442806-4	chr14	26442636	26442836	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347494, intron 10 of 19)	intron (NM_001347494, intron 10 of 19)	85189.0	NR_038005	71106.0	Mm.158564	NR_038005	ENSMUSG00000021874	4933413J09Rik	GCSE	RIKEN cDNA 4933413J09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-47504736-3	chr14	47504672	47504872	+	736.6555179999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146085, intron 2 of 3)	intron (NM_001146085, intron 2 of 3)	32211.0	NM_001146085	78938.0	Mm.11935	NM_030236	ENSMUSG00000037536	Fbxo34	2900057B08Rik|5830426G16Rik	F-box protein 34	protein-coding	0.536504268653808	1.22711016208663	0.919516089444257	1.46083637595951	0.363082249641271	0.396427159885579	0.385765141282833	0.376526953948293	-4.62758396241226	0.0082161729710162	0.0945741421810935
Merged-chr17-87975646-3	chr17	87975572	87975772	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr	intron (NM_010830, intron 1 of 9)	CpG	622.0	NM_010830	17688.0	Mm.18210	NM_010830	ENSMUSG00000005370	Msh6	AU044881|AW550279|GTBP|Gtmbp	mutS homolog 6	protein-coding	0.656867007050252	1.02181341091848	0.581503683989155	0.563586441394949	0.392095675449	0.911696667613268	0.407002971683337	0.829918945831335	-0.352858725558988	0.830878960415296	1
Merged-chr4-143212660-4	chr4	143212541	143212741	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081355)	promoter-TSS (NM_001081355)	68.0	NM_001081355	110593.0	Mm.332020	NM_001081355	ENSMUSG00000057637	Prdm2	4833427P12Rik|E330024L24Rik|Gm1033|Gm19732|KMT8|Riz|Riz1|Znfpr1c1	PR domain containing 2, with ZNF domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-113544441-3	chr11	113544316	113544516	+	788.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027216, intron 3 of 9)	intron (NM_027216, intron 3 of 9)	21399.0	NM_001166503	69806.0	Mm.341021	NM_027216	ENSMUSG00000041654	Slc39a11	1810074D23Rik	solute carrier family 39 (metal ion transporter), member 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165912993-2	chr2	165912893	165913093	+	635.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-28155.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-89739642-4	chr13	89739528	89739728	+	994.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081249, intron 1 of 14)	CpG	2884.0	NM_001081249	13003.0	Mm.158700	NM_019389	ENSMUSG00000021614	Vcan	5430420N07Rik|9430051N09|Cspg2|DPEAAE|NG2|PG-M|PG-M(V0)|PG-M(V1)|hdf	versican	protein-coding	1.61516314221705	1.00165735596485	0.985676628252822	1.70597812335934	1.62901164224634	1.57970609373918	1.8769674064932	1.48068602124679	0.931068710879344	0.446496894790186	0.914175724179633
Merged-chr1-71100332-4	chr1	71100148	71100348	+	940.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007525, intron 1 of 10)	intron (NM_007525, intron 1 of 10)	2724.0	NM_007525	12021.0	Mm.10764	NM_007525	ENSMUSG00000026196	Bard1	-	BRCA1 associated RING domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-95559462-4	chr9	95559361	95559561	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198414)	promoter-TSS (NM_198414)	-356.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-29664276-4	chr2	29664165	29664365	+	866.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054050, intron 1 of 23)	intron (NM_054050, intron 1 of 23)	44545.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-37143181-2	chr10	37143081	37143281	+	653.583374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-4255.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-108082553-1	chr5	108082453	108082653	+	694.400024	f0_c57.idr	intron (NM_001253879, intron 3 of 14)	B2_Mm2|SINE|B2	4388.0	NM_001253878	17765.0	Mm.257149	NM_013827	ENSMUSG00000029267	Mtf2	9230112N11Rik|AA537621|C76717|M96|Pcl2	metal response element binding transcription factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-40522658-4	chr12	40522571	40522771	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	76618.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-37489867-4	chr9	37489775	37489975	+	882.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146222, intron 1 of 3)	CpG	554.0	NM_146222	235184.0	Mm.127892	NM_146222	ENSMUSG00000042138	Msantd2	2810450G17Rik|9530092B10Rik	Myb/SANT-like DNA-binding domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-96736839-3	chr15	96736749	96736949	+	877.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-37121.0	NM_175121	67760.0	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94922984-2	chr10	94922884	94923084	+	625.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_018797, intron 1 of 30)	intron (NM_018797, intron 1 of 30)	21594.0	NM_018797	54712.0	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-8080304-4	chr14	8080215	8080415	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001348727)	promoter-TSS (NM_001348727)	2.0	NM_025938	67053.0	Mm.210048	NM_025938	ENSMUSG00000023156	Rpp14	2610511E03Rik|AA682089	ribonuclease P 14 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-44456434-2	chr10	44456334	44456534	+	562.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007548, intron 2 of 6)	intron (NM_007548, intron 2 of 6)	2314.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126758878-2	chr7	126758778	126758978	+	623.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011952)	promoter-TSS (NM_011952)	-748.0	NM_011952	26417.0	Mm.8385	NM_011952	ENSMUSG00000063065	Mapk3	Erk-1|Erk1|Ert2|Esrk1|Mnk1|Mtap2k|Prkm3|p44|p44erk1|p44mapk	mitogen-activated protein kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-9945147-2	chr19	9945047	9945247	+	674.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-35453.0	NR_073181	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-56713162-2	chr6	56713062	56713262	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2B|LTR|ERVL	-1743.0	NM_030235	78937.0	Mm.105343	NM_030235	ENSMUSG00000029787	Avl9	5830411G16Rik|D730049P16Rik|mKIAA0241	AVL9 cell migration associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70700799-4	chr11	70700718	70700918	+	943.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252485)	promoter-TSS (NM_001252485)	270.0	NM_153103	16562.0	Mm.99996	NM_153103	ENSMUSG00000020821	Kif1c	B430105J22Rik|D11Bwg1349e|Ltxs1|Orch3	kinesin family member 1C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-94239810-4	chr16	94239717	94239917	+	845.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360045, intron 5 of 10)	ORR1D2|LTR|ERVL-MaLR	50474.0	NM_001360045	110948.0	Mm.30921	NM_139145	ENSMUSG00000040820	Hlcs	410I21.SP6|D16Jhu34	holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-193833489-4	chr1	193833387	193833587	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-325957.0	NR_029592	387201.0		NR_029592	ENSMUSG00000065533	Mir205	Mirn205|mir-205|mmu-mir-205	microRNA 205	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25747157-2	chr7	25747057	25747257	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178089, intron 3 of 7)	PB1D9|SINE|Alu	7602.0	NM_144922	232989.0	Mm.254223	NM_144922	ENSMUSG00000040725	Hnrnpul1	E130317O14Rik|E1B-AP5|E1BAP5|Hnrnpul|Hnrpul1	heterogeneous nuclear ribonucleoprotein U-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125509971-3	chr6	125509855	125510055	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-15195.0	NM_007657	12527.0	Mm.210676	NM_007657	ENSMUSG00000030342	Cd9	Tspan29	CD9 antigen	protein-coding	5.1446040160907	4.17609592096661	4.31404977561696	4.71630162708919	3.33358183800889	1.79745574277418	2.83158636858053	2.7269721982454	-2.62580934119241	1.99719214154243e-06	0.000115946667649481
Merged-chr1-180830669-2	chr1	180830569	180830769	+	668.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17064.0	NM_008210	15078.0	Mm.138832	NM_008210	ENSMUSG00000060743	H3f3a	EyeLinc14|H3.3A	H3 histone, family 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-9124631-2	chr15	9124531	9124731	+	733.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013787, intron 4 of 9)	intron (NM_013787, intron 4 of 9)	15823.0	NM_013787	27401.0	Mm.35584	NM_013787	ENSMUSG00000054115	Skp2	4930500A04Rik|FBXL1|FWD1|p45	S-phase kinase-associated protein 2 (p45)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-57243832-2	chr17	57243732	57243932	+	638.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030084, intron 5 of 16)	RMER12|LTR|ERVK	3638.0	NM_001308074	78308.0	Mm.28468	NM_030084	ENSMUSG00000005823	Gpr108	1810015L19Rik|AA589464|C79132|Lustr2	G protein-coupled receptor 108	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131030020-2	chr1	131029920	131030120	+	773.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10175.0	NM_010548	16153.0	Mm.874	NM_010548	ENSMUSG00000016529	Il10	CSIF|Il-10	interleukin 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32727577-4	chr2	32727499	32727699	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252547)	promoter-TSS (NM_001252547)	-90.0	NM_001252547	27387.0	Mm.9593	NM_013781	ENSMUSG00000059013	Sh2d3c	Chat|Nsp3|Shep1	SH2 domain containing 3C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80449391-2	chr10	80449291	80449491	+	795.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15738.0	NM_001164148	21423.0	Mm.3406	NM_011548	ENSMUSG00000020167	Tcf3	A1|AA408400|ALF2|AW209082|E12|E12/E47|E2A|E47|KA1|ME2|Pan1|Pan2|TCF-3|Tcfe2a|VDIR|bHLHb21	transcription factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71270865-2	chr8	71270765	71270965	+	645.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029621, intron 1 of 10)	intron (NM_029621, intron 1 of 10)	1725.0	NM_001163042	76478.0	Mm.27355	NM_029621	ENSMUSG00000035439	Haus8	2410004L22Rik|Hice1	4HAUS augmin-like complex, subunit 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-84318789-4	chr1	84318698	84318898	+	902.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34153.0	NM_001003948	98496.0	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4|P-CLI1	phosphotyrosine interaction domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-71731167-4	chr1	71731065	71731265	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	77830.0	NR_040308	100042814.0	Mm.405775	NR_040308	ENSMUSG00000073652	Apol7d	Gm15456	apolipoprotein L 7d	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98942900-5	chr11	98942772	98942972	+	931.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177303, intron 1 of 8)	intron (NM_001177303, intron 1 of 8)	3161.0	NM_001177303	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94577672-3	chr10	94577545	94577745	+	822.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177026, intron 1 of 3)	CYRA11_Mm|Unknown|Y-chromosome	1382.0	NM_177026	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44381880-2	chr9	44381780	44381980	+	858.6666869999999	f1_balb.idr|f1_c57bl6.idr	exon (NM_021395, exon 7 of 26)	exon (NM_021395, exon 7 of 26)	2390.0	NM_021395	12282.0	Mm.116721	NM_021395	ENSMUSG00000032115	Hyou1	AI415631|CBP-140|Cab140|Grp170|Orp150	hypoxia up-regulated 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-123600640-2	chr8	123600540	123600740	+	559.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TGGA)n|Simple_repeat|Simple_repeat	-34553.0	NR_046140	100861488.0		NR_046140	ENSMUSG00000094916	Gm26391	Rn5s17	predicted gene, 26391	rRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-84129588-4	chr11	84129453	84129653	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172562)	promoter-TSS (NM_172562)	15.0	NM_172562	217031.0	Mm.45159	NM_172562	ENSMUSG00000018651	Tada2a	AV319371|D030022J10Rik|Tada2l	transcriptional adaptor 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-24600277-3	chr6	24600163	24600363	+	956.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053098, intron 1 of 2)	intron (NM_053098, intron 1 of 2)	2492.0	NM_053098	93677.0	Mm.332941	NM_053098	ENSMUSG00000029683	Lmod2	C-Lmod	leiomodin 2 (cardiac)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-39006286-3	chr2	39006180	39006380	+	715.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1149.0	NM_025592	66489.0	Mm.345333	NM_025592	ENSMUSG00000062997	Rpl35	2410039E09Rik	ribosomal protein L35	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-53464436-1	chr18	53464336	53464536	+	663.0	f1_balb.idr	promoter-TSS (NM_001033281)	promoter-TSS (NM_001033281)	-110.0	NM_001033281	225518.0	Mm.297645	NM_001033281	ENSMUSG00000069378	Prdm6	Gm92|PRISM	PR domain containing 6	protein-coding	0.322473530075434	0.353245947704298	0.998068130830797	0.33556247051799	1.16377949164152	0.355463531529044	0.345522607080941	1.34023592270538	1.70727184109575	0.375607005843698	1
Merged-chr4-57028133-4	chr4	57028037	57028237	+	892.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355492, intron 18 of 24)	intron (NM_001355492, intron 18 of 24)	-37746.0	NM_001142965	230235.0	Mm.207654	NM_001142965	ENSMUSG00000045589	Frrs1l	6430704M03Rik	ferric-chelate reductase 1 like	protein-coding	2.64129442300492	2.718293653192	2.47257256224769	2.99619180961032	4.21680670724721	2.87722745828767	2.49321464499007	3.1872484142641	1.13292590381223	0.103777487370761	0.501930513359738
Merged-chr6-53881054-2	chr6	53880954	53881154	+	694.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027749, intron 12 of 12)	intron (NM_027749, intron 12 of 12)	-60229.0	NM_025817	66873.0	Mm.422727	NM_025817	ENSMUSG00000043496	Tril	1200009O22Rik|AI316813|mKIAA0644	TLR4 interactor with leucine-rich repeats	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117836015-2	chr10	117835915	117836115	+	672.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_024457, intron 1 of 7)	intron (NM_024457, intron 1 of 7)	9959.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27056384-4	chr17	27056265	27056465	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080553)	promoter-TSS (NM_080553)	-939.0	NM_080553	16440.0	Mm.458106	NM_080553	ENSMUSG00000042644	Itpr3	IP3R 3|Ip3r3|Itpr-3|tf	inositol 1,4,5-triphosphate receptor 3	protein-coding	2.93374778472325	2.98690284577587	3.09232517482745	3.97233051725719	3.11646614266732	2.21236278644057	3.37546260913187	2.06418744096932	-0.856153581837519	0.224418811554993	0.716302896348785
Merged-chr10-25196463-3	chr10	25196350	25196550	+	726.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018747, intron 7 of 7)	Lx7|LINE|L1	3720.0	NM_001347460	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-17722415-4	chr10	17722302	17722502	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010828)	promoter-TSS (NM_010828)	-826.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-160368051-4	chr2	160367948	160368148	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010658)	promoter-TSS (NM_010658)	-983.0	NM_010658	16658.0	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-178317248-2	chr1	178317148	178317348	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER5|LTR|ERV1	-1905.0	NM_025511	66359.0	Mm.489720	NM_025511	ENSMUSG00000026500	Cox20	2310005N03Rik|Fam36a	COX20 Cox2 chaperone	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-142391320-3	chr7	142391267	142391467	+	741.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3497.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	1.21406786716369	0.862754558417701	0.853189722237643	1.27787810027873	1.22371272335799	1.37284704320024	1.7109480489877	1.28445628020758	1.60274542390075	0.233076323831124	0.728474210976025
Merged-chr17-36915218-2	chr17	36915119	36915319	+	600.5	f0_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8573.0	NR_045439	73286.0	Mm.426884	NR_045439	ENSMUSG00000092239	1700031A10Rik	-	RIKEN cDNA 1700031A10 gene	ncRNA	1.9267143349808	1.46510396556571	1.24463412398073	1.5271870031828	1.94361908167914	1.89794623909414	1.25201539891975	1.22308953423978	0.198621729116645	0.860940641247079	0.998431161219273
Merged-chr15-66561074-4	chr15	66560967	66561167	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172514)	promoter-TSS (NM_172514)	-21.0	NM_172514	213068.0	Mm.132299	NM_172514	ENSMUSG00000036944	Tmem71	AI661017|E430024D12	transmembrane protein 71	protein-coding	5.17353212728401	4.9079921952175	5.23105466960316	4.2310139485019	4.81961149449318	5.21873862067742	3.49135421810344	4.74096188894001	-0.293330376699013	0.479165935209218	0.928092227925527
Merged-chr17-33956243-1	chr17	33956143	33956343	+	939.0	f0_balb.idr	promoter-TSS (NM_011296)	promoter-TSS (NM_011296)	153.0	NM_001357329	224705.0	Mm.448614	NM_172620	ENSMUSG00000024319	Vps52	ARE1|D130068D18|D430041K17Rik|SAC2|Sacm2l|tclw5	VPS52 GARP complex subunit	protein-coding	0.670667999297821	1.07620378726866	0.383973154165817	0.376549950893217	1.45529471602738	0.395619627083176	0.591595181471963	0.568678478816177	0.848255941948208	0.619746107616557	1
Merged-chr8-25975395-3	chr8	25975263	25975463	+	808.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029884, intron 1 of 17)	intron (NM_029884, intron 1 of 17)	1381.0	NM_029884	52120.0	Mm.28326	NM_029884	ENSMUSG00000037260	Hgsnat	9430010M12Rik|AW208455|D8Ertd354e|Tmem76	heparan-alpha-glucosaminide N-acetyltransferase	protein-coding	1.25703028613083	0.262195384159177	-0.206181367690767	-0.213083892183558	-0.223053823154551	-0.195462088358684	-0.204230396940542	-0.211869151651372	-4.34491491124589	0.0523707018643065	1
Merged-chr9-40709407-3	chr9	40709215	40709415	+	944.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133733, intron 1 of 6)	intron (NM_133733, intron 1 of 6)	23351.0	NM_133733	71566.0	Mm.280560	NM_133733	ENSMUSG00000032024	Clmp	9030425E11Rik|ACAM|ASP5|AW557819	CXADR-like membrane protein	protein-coding	1.95020770024727	1.26141451325524	2.14793996461617	1.46494771888804	3.77382036524401	1.27194241981052	3.21448600730047	3.11143420469638	2.69793676458939	0.0047661328750714	0.0645927239601775
Merged-chr13-56711959-4	chr13	56711879	56712079	+	981.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164042, intron 1 of 6)	L1MB7|LINE|L1	8311.0	NM_001164042	17129.0	Mm.272920	NM_008541	ENSMUSG00000021540	Smad5	1110051M15Rik|AI451355|Dwf-C|Madh5|MusMLP	SMAD family member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-36560357-3	chr5	36560239	36560439	+	793.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133910, intron 2 of 13)	intron (NM_133910, intron 2 of 13)	22058.0	NM_133910	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-79864756-2	chr10	79864656	79864856	+	636.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_008956)	TTS (NM_008956)	2169.0	NR_105875	102465549.0		NR_105875	ENSMUSG00000098562	Mir6910	Gm27763|mmu-mir-6910	microRNA 6910	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70944777-3	chr11	70944671	70944871	+	867.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083331, intron 12 of 16)	intron (NM_001083331, intron 12 of 16)	25202.0	NM_172394	19069.0	Mm.288962	NM_172394	ENSMUSG00000040667	Nup88	Nup84|Prei2	nucleoporin 88	protein-coding	2.30967957488793	1.61322812024369	2.30732233546011	1.53648034069262	2.24259575199848	2.15394644267147	2.32513212700533	2.35394625747375	0.672030443013659	0.461955569124321	0.921194606787634
Merged-chr2-145754144-4	chr2	145754043	145754243	+	930.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_033220)	TTS (NR_033220)	-31973.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-50445219-4	chr16	50445115	50445315	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-12749.0	NM_001347240	70508.0	Mm.28940	NM_027444	ENSMUSG00000022641	Bbx	5530401J07Rik|5730403O13Rik	bobby sox HMG box containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-64122231-4	chr1	64122119	64122319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033563)	promoter-TSS (NM_033563)	-830.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-26443245-2	chr8	26443151	26443351	+	886.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	285082.0	NM_199042	73754.0	Mm.383241	NM_199042	ENSMUSG00000037214	Thap1	4833431A01Rik|AW490810	THAP domain containing, apoptosis associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95633968-2	chr3	95633868	95634068	+	745.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	8988.0	NM_001026212	56205.0	Mm.241365	NM_019561	ENSMUSG00000038619	Ensa	1700020C18Rik|2610007F17Rik|AI451924	endosulfine alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-61638977-4	chr11	61638876	61639076	+	894.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER76|LTR|ERVL	-14345.0	NM_027817	71520.0	Mm.202760	NM_027817	ENSMUSG00000004837	Grap	8430435N19Rik|BB233594	GRB2-related adaptor protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-78164338-2	chr11	78164238	78164438	+	546.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009423, intron 1 of 6)	intron (NM_009423, intron 1 of 6)	1212.0	NM_009423	22032.0	Mm.390418	NM_009423	ENSMUSG00000017386	Traf4	A530032M13Rik|CART1|msp2	TNF receptor associated factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-78537718-4	chr1	78537612	78537812	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026713, intron 6 of 6)	intron (NM_026713, intron 6 of 6)	26652.0	NM_026713	68393.0	Mm.41325	NM_026713	ENSMUSG00000012187	Mogat1	0610030A14Rik|1110064N14Rik|Dgat2l|Dgat2l1|MGAT1|WI1-2612I11.1|mDC2	monoacylglycerol O-acyltransferase 1	protein-coding	5.58984958555238	5.93527979043895	5.84069296610382	5.74997293376548	6.04905355037182	5.55232392910269	5.39117827375331	6.47907214607354	0.1804782346447	0.517275857230123	0.947641799425091
Merged-chr18-37955014-4	chr18	37954892	37955092	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153793)	promoter-TSS (NM_153793)	-4.0	NM_010411	15183.0	Mm.20521	NM_010411	ENSMUSG00000024454	Hdac3	AW537363	histone deacetylase 3	protein-coding	4.05541231963385	4.46467667143389	4.43023248832121	3.9024519560837	4.5932881522822	4.02974935354298	4.81596274624235	4.1156578826318	0.267529963798725	0.518575238523849	0.947641799425091
Merged-chr11-97547105-5	chr11	97547007	97547207	+	800.266663	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018873, intron 3 of 19)	CpG	28019.0	NM_018873	56013.0	Mm.342665	NM_018873	ENSMUSG00000038453	Srcin1	P140|SNIP|mKIAA1684|p140Cap	SRC kinase signaling inhibitor 1	protein-coding	1.98056818718432	2.00113967424814	2.25979004984239	0.76527329533776	1.29701878710975	0.808775008050592	0.787303730669163	0.768318326673322	-3.35140743773205	0.0228692107199765	0.196738616313297
Merged-chr15-41789578-4	chr15	41789416	41789616	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_130885)	promoter-TSS (NM_130885)	1.0	NM_130885	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-14880535-4	chr3	14880445	14880645	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5724.0	NM_001357334	12349.0	Mm.1186	NM_009801	ENSMUSG00000027562	Car2	AI131712|CAII|Ca2|Car-2|Ltw-5|Lvtw-5	carbonic anhydrase 2	protein-coding	5.28584280184842	5.24322543628449	5.62924760301066	5.49817098499633	5.16960302460328	5.60756576216235	4.87820417823138	4.9047780569404	-0.297150786582501	0.321067321210276	0.823346905075712
Merged-chr7-128302355-4	chr7	128302260	128302460	+	854.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4229.0	NM_145590	233913.0	Mm.220880	NM_145590	ENSMUSG00000030780	BC017158	-	cDNA sequence BC017158	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-128480516-2	chr6	128480416	128480616	+	647.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_028593, intron 2 of 4)	B2_Mm2|SINE|B2	41759.0	NR_028593	791299.0	Mm.297516	NR_028592	ENSMUSG00000059659	Gm10069	-	predicted gene 10069	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-80083826-2	chr12	80083726	80083926	+	668.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29187.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-154256248-4	chr2	154256122	154256322	+	778.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-1657.0	NM_175167	71425.0	Mm.389341	NM_175167	ENSMUSG00000067998	Bpifb9a	4833413D08Rik|AI413838	BPI fold containing family B, member 9A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35139822-1	chr17	35139722	35139922	+	1000.0	f1_balb.idr	intron (NM_001252469, intron 5 of 23)	B1_Mur4|SINE|Alu	4108.0	NM_001252469	224727.0	Mm.203962	NM_057171	ENSMUSG00000024392	Bag6	2410045D21Rik|AA408914|BAG-6|Bat3|D17H6S52E|G3|Scythe	BCL2-associated athanogene 6	protein-coding	-0.131307170216531	-0.25414182955572	-0.0901540169490761	-0.261296587077845	-0.265674821552472	-0.253227808857031	0.294135534713089	0.148617627551655	1.9161621941685	0.411075532515425	1
Merged-chr14-55763643-5	chr14	55763542	55763742	+	858.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_020490)	TTS (NM_020490)	2214.0	NM_020490	57260.0	Mm.159670	NM_020490	ENSMUSG00000040432	Ltb4r2	5830462O07Rik|BLT2|LTB4-R 2|LTB4-R-2|LTB4-R2	leukotriene B4 receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116854708-2	chr11	116854601	116854801	+	981.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_178620, intron 2 of 12)	intron (NM_178620, intron 2 of 12)	701.0	NM_001361586	69900.0	Mm.348004	NM_178620	ENSMUSG00000020818	Mfsd11	2600014M03Rik	major facilitator superfamily domain containing 11	protein-coding	-0.413001264102467	0.736581173425314	-0.400204021419316	-0.404974632695649	-0.411798568472991	-0.3927221313696	-0.398848875019414	-0.0360590857992797	-2.20248317003753	0.388248432465697	1
Merged-chr9-107982823-4	chr9	107982710	107982910	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023738, intron 21 of 23)	intron (NM_023738, intron 21 of 23)	3106.0	NM_026597	68176.0	Mm.76166	NM_026597	ENSMUSG00000042106	Fam212a	6230427J02Rik|Inka1	family with sequence similarity 212, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-65450867-4	chr16	65450761	65450961	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69768.0	NM_008849	18736.0	Mm.355440	NM_008849	ENSMUSG00000004842	Pou1f1	GHF-1|Hmp1|Pit-1|Pit1|Pit1-rs1|dw|dwarf	POU domain, class 1, transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-33283845-2	chr4	33283745	33283945	+	647.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR53_Mm|LTR|ERVK	-26466.0	NM_011884	24018.0	Mm.240024	NM_011884	ENSMUSG00000028274	Rngtt	AU020997|HCE|MCE1	RNA guanylyltransferase and 5'-phosphatase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-122599403-5	chr6	122599233	122599433	+	915.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001134391, intron 2 of 7)	ID_B1|SINE|B4	3111.0	NM_031159	11810.0	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-22531394-3	chr9	22531282	22531482	+	741.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360259, intron 5 of 22)	MTEa|LTR|ERVL-MaLR	55667.0	NM_181316	319845.0	Mm.176725	NM_178415	ENSMUSG00000035919	Bbs9	E130103I17Rik	Bardet-Biedl syndrome 9 (human)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-45734121-4	chr17	45734045	45734245	+	878.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028164)	promoter-TSS (NM_028164)	-301.0	NM_028164	72240.0	Mm.482897	NM_028164	ENSMUSG00000094690	1600014C23Rik	-	RIKEN cDNA 1600014C23 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-33996045-2	chr5	33995945	33996145	+	554.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001001985)	promoter-TSS (NM_001001985)	61.0	NM_001001985	269642.0	Mm.274610	NM_001001985	ENSMUSG00000048142	Nat8l	1110038O08Rik|Shati	N-acetyltransferase 8-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-15987370-4	chr4	15987267	15987467	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013752, intron 13 of 15)	Lx9|LINE|L1	26471.0	NM_001355615	209212.0	Mm.46455	NM_145950	ENSMUSG00000041153	Osgin2	BC010311|C230027H09Rik	oxidative stress induced growth inhibitor family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-110985784-3	chr9	110985690	110985890	+	813.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_153100, exon 3 of 3)	3' UTR (NM_153100, exon 3 of 3)	-3709.0	NR_152179	791282.0	Mm.406769	NR_152179	ENSMUSG00000057802	Gm10030	-	predicted gene 10030	ncRNA	2.62424786495732	3.15844286399247	1.45979696936079	1.41729486064952	3.24757349559009	3.49947367383826	3.16012859093619	2.78927697035753	1.46811337468884	0.0787458480169757	0.427121466775621
Merged-chr3-52755124-4	chr3	52754994	52755194	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038079, intron 1 of 3)	MIR|SINE|MIR	15370.0	NR_038079	329639.0	Mm.131245	NR_038079	ENSMUSG00000102785	Gm2447	100039832|A530017F20	predicted gene 2447	ncRNA	4.14622168039356	4.67794545872706	5.48233361982552	4.79580969640774	3.89697890583524	3.90070684820025	4.56483404576447	4.74155791612064	-0.657980522867131	0.120460520139506	0.544833604198046
Merged-chr9-118867225-2	chr9	118867118	118867318	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 9 of 13)	MIR3|SINE|MIR	-59318.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	1.67186529377077	0.870836653010013	0.625382282939049	0.817118503687593	0.782810773367384	0.641436957661684	1.02772399291412	1.72922095506745	0.194803268908409	0.89561877804827	0.998431161219273
Merged-chr13-37963589-4	chr13	37963480	37963680	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30628.0	NM_025965	107513.0	Mm.426670	NM_025965	ENSMUSG00000021427	Ssr1	2510001K09Rik|6330400D04|AI159733|AI452176|SSR|TRAPA	signal sequence receptor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-77978572-4	chr10	77978498	77978698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026431)	promoter-TSS (NM_026431)	-52.0	NM_026431	67884.0	Mm.297512	NM_026431	ENSMUSG00000020284	1810043G02Rik	AV026620|D10Jhu13e	RIKEN cDNA 1810043G02 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-88847868-2	chr6	88847768	88847968	+	571.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_045880)	TTS (NR_045880)	5014.0	NR_045880	100038356.0	Mm.442704	NR_045880	ENSMUSG00000085828	Gm15612	-	predicted gene 15612	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-57889819-4	chr14	57889714	57889914	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029492, intron 1 of 12)	CpG	522.0	NM_029492	75965.0	Mm.29044	NM_029492	ENSMUSG00000021969	Zdhhc20	4930542A17Rik|5033406L14Rik|AI448102|B230110O18Rik|HK11	zinc finger, DHHC domain containing 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-101076668-4	chr9	101076575	101076775	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001100451, intron 1 of 1)	intron (NM_001100451, intron 1 of 1)	1913.0	NM_001100451	77853.0	Mm.326206	NM_001100451	ENSMUSG00000066415	Msl2	E130103E02Rik|Msl2l1|Rnf184	MSL complex subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-30268975-2	chr11	30268887	30269087	+	587.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49215.0	NM_175836	20742.0	Mm.123110	NM_009260	ENSMUSG00000020315	Sptbn1	9930031C03Rik|AL033301|SPTB2|Spnb-2|Spnb2|elf1|elf3|mKIAA4049	spectrin beta, non-erythrocytic 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-40844319-4	chr13	40844221	40844421	+	992.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-15447.0	NM_023887	14538.0	Mm.314757	NM_008105	ENSMUSG00000021360	Gcnt2	5330430K10Rik|IGnT|IGnTA|IGnTB|IGnTC	glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91730742-2	chr16	91730642	91730842	+	896.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110276, intron 1 of 15)	intron (NM_001110276, intron 1 of 15)	1371.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-22847830-4	chr14	22847719	22847919	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028275, intron 6 of 6)	intron (NM_028275, intron 6 of 6)	246752.0	NR_033550	791307.0	Mm.364384	NR_033550	ENSMUSG00000068680	Gm10248	-	predicted gene 10248	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-78435917-2	chr17	78435817	78436017	+	697.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16D|LTR|ERVL	-17765.0	NM_001285940	225020.0	Mm.236835	NM_199448	ENSMUSG00000056121	Fez2	9030616F16|D17Ertd315e	fasciculation and elongation protein zeta 2 (zygin II)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-77668780-2	chr18	77668680	77668880	+	586.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_178670, intron 2 of 4)	intron (NM_178670, intron 2 of 4)	45230.0	NM_178670	212163.0	Mm.23293	NM_178670	ENSMUSG00000047466	8030462N17Rik	Akd2|Ark2N	RIKEN cDNA 8030462N17 gene	protein-coding	-0.991597071560028	-1.11266276692436	-1.12372915630895	-1.13234486067054	-1.13506748179545	-1.11026463418018	-1.12122396832063	-0.590291635890923	1.70329920231503	0.601976331032042	1
Merged-chr6-72167233-2	chr6	72167138	72167338	+	678.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-44041.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-20660911-2	chr9	20660811	20661011	+	721.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023371, intron 2 of 3)	intron (NM_023371, intron 2 of 3)	8781.0	NM_023371	23988.0	Mm.7906	NM_023371	ENSMUSG00000032171	Pin1	0610025L01Rik|D9Bwg1161e	protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-142735529-4	chr6	142735429	142735629	+	780.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21157.0	NM_009908	12764.0	Mm.3820	NM_009908	ENSMUSG00000030282	Cmas	AW208911|CMPNeu5Ac|D6Bwg0250e	cytidine monophospho-N-acetylneuraminic acid synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16874353-4	chr7	16874250	16874450	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081655)	promoter-TSS (NM_001081655)	536.0	NR_152128	320950.0	Mm.420078	NR_152128	ENSMUSG00000097842	9330104G04Rik	-	RIKEN cDNA 9330104G04 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-87037033-2	chr4	87036933	87037133	+	778.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110240, intron 4 of 9)	L2a|LINE|L2	162619.0	NM_139306	230379.0	Mm.45019	NM_139306	ENSMUSG00000038007	Acer2	2410116I05Rik|Asah3l|CRG-L1|maCER2	alkaline ceramidase 2	protein-coding	-0.99165326446731	-1.23154407207237	-1.24188086333264	-1.25037181144308	-1.25799794907305	-1.06665912964333	-1.07689592372534	-1.24885193579094	0.277399528680749	0.929681311389331	1
Merged-chr2-90467496-2	chr2	90467395	90467595	+	670.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 5 of 23)	MTB_Mm|LTR|ERVL-MaLR	11679.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-28395889-4	chr15	28395801	28396001	+	912.05835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133365, intron 58 of 78)	(TTC)n|Simple_repeat|Simple_repeat	192135.0	NM_133365	110082.0	Mm.248464	NM_133365	ENSMUSG00000022262	Dnah5	AU022615|Dnahc5|Mdnah5|b2b1134Clo|b2b1154Clo|b2b1537Clo|b2b1565Clo|b2b3491Clo|b2b601Clo|mKIAA1603	dynein, axonemal, heavy chain 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-72111213-4	chr9	72111072	72111272	+	989.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253862)	promoter-TSS (NM_001253862)	29.0	NM_001253862	21406.0	Mm.171615	NM_011544	ENSMUSG00000032228	Tcf12	A130037E08Rik|ALF1|HEB|HEBAlt|HTF-4|HTF4|ME1|REB|bHLHb20	transcription factor 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-29986210-4	chr13	29986093	29986293	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010093)	promoter-TSS (NM_010093)	-130.0	NM_010093	13557.0	Mm.268356	NM_010093	ENSMUSG00000016477	E2f3	E2F3b|E2f3a	E2F transcription factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97453359-3	chr6	97453273	97453473	+	925.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	5913.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-43234827-1	chr1	43234727	43234927	+	1000.0	f1_c57bl6.idr	Intergenic	Intergenic	-38066.0	NM_001289533	14200.0	Mm.6799	NM_010212	ENSMUSG00000008136	Fhl2	FHL-2|SLIM-3|SLIM3	four and a half LIM domains 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-61106843-4	chr18	61106800	61107000	+	874.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037859, intron 2 of 21)	intron (NM_001037859, intron 2 of 21)	1328.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-91808359-3	chr13	91808265	91808465	+	897.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145453)	promoter-TSS (NM_145453)	-669.0	NM_145453	69085.0	Mm.52356	NM_145453	ENSMUSG00000021621	Zcchc9	1810019C21Rik	zinc finger, CCHC domain containing 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-31637204-4	chr17	31636926	31637126	+	941.0576169999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178224, intron 1 of 15)	CpG	179.0	NM_144855	12411.0	Mm.206417	NM_144855	ENSMUSG00000024039	Cbs	AI047524|AI303044|HIP4	cystathionine beta-synthase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-137858138-4	chr5	137858039	137858239	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133209)	promoter-TSS (NM_133209)	-90.0	NM_133209	170741.0	Mm.347593	NM_133209	ENSMUSG00000066684	Pilrb1	FDFACT|Fdact|Pilrb	paired immunoglobin-like type 2 receptor beta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-94573129-2	chr16	94573029	94573229	+	728.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113389, intron 1 of 11)	intron (NM_001113389, intron 1 of 11)	2222.0	NM_001113389	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27020245-3	chr17	27020301	27020501	+	756.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_149749, exon 7 of 7)	non-coding (NR_149749, exon 7 of 7)	2366.0	NM_001251881	70772.0	Mm.440437	NM_027544	ENSMUSG00000048731	Ggnbp1	0610031G08Rik|mdf	gametogenetin binding protein 1	protein-coding	-1.33927601290251	-1.1500655493574	-1.31937625420031	-1.32768700813376	-0.948048553500553	-1.30706634129226	-1.31708589100289	-1.32619938715315	1.06814573574813	0.753975296856039	1
Merged-chr15-58324236-4	chr15	58324109	58324309	+	980.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177755)	promoter-TSS (NM_177755)	-40.0	NM_177755	268807.0	Mm.124498	NM_177755	ENSMUSG00000022357	Klhl38	8230402K04Rik	kelch-like 38	protein-coding	-2.18292257394068	-2.15545247547656	-2.03304972317742	-2.17058342868585	-2.18099422382073	-2.1536522739386	-2.16187909550322	-2.16936197735154	-0.683654500252594	0.846597994014493	1
Merged-chr18-4032545-4	chr18	4032448	4032648	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-133284.0	NM_026092	67328.0	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-53286543-3	chr6	53286432	53286632	+	867.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001327821)	promoter-TSS (NM_001327821)	-771.0	NM_001327821	231991.0	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-24640800-6	chr10	24640761	24640961	+	990.4722289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008813, exon 25 of 25)	3' UTR (NM_008813, exon 25 of 25)	45419.0	NM_010217	14219.0	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99680970-3	chr7	99680933	99681133	+	628.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175316, intron 7 of 13)	intron (NM_175316, intron 7 of 13)	14776.0	NM_001252531	101488.0	Mm.11249	NM_175316	ENSMUSG00000030737	Slco2b1	AI060904|AI852653|OATP-B|Slc21a9	solute carrier organic anion transporter family, member 2b1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-173219762-2	chr2	173219662	173219862	+	816.071411	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021394)	promoter-TSS (NM_021394)	-840.0	NM_001139519	58203.0	Mm.116687	NM_021394	ENSMUSG00000027514	Zbp1	2010010H03Rik|Dai|Dlm1|mZaDLM	Z-DNA binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-29510064-2	chr19	29509964	29510164	+	585.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_015567, intron 3 of 3)	intron (NR_015567, intron 3 of 3)	11923.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-54883322-4	chr14	54883235	54883435	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007537)	promoter-TSS (NM_007537)	-90.0	NM_007537	12050.0	Mm.6967	NM_007537	ENSMUSG00000089682	Bcl2l2	AW048834|Bcl-w|Gtrgal2|Gtrosa41|bclw|c98	BCL2-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-31200813-3	chr5	31200716	31200916	+	958.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175311, exon 3 of 4)	exon (NM_175311, exon 3 of 4)	1226.0	NM_001177901	101023.0	Mm.45033	NM_175311	ENSMUSG00000043059	Zfp513	AW990386|D430028M17Rik|Znf513	zinc finger protein 513	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-68218554-2	chr18	68218454	68218654	+	816.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_172631, intron 3 of 5)	Lx8|LINE|L1	-9392.0	NM_001357444	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-106643473-4	chr1	106643368	106643568	+	778.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009741, intron 1 of 1)	intron (NM_009741, intron 1 of 1)	70822.0	NM_009741	12043.0	Mm.257460	NM_009741	ENSMUSG00000057329	Bcl2	AW986256|Bcl-2|C430015F12Rik|D630044D05Rik|D830018M01Rik	B cell leukemia/lymphoma 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-88504018-4	chr10	88503916	88504116	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146690)	promoter-TSS (NM_001146690)	-46.0	NM_001146690	212862.0	Mm.288897	NM_144807	ENSMUSG00000060002	Chpt1	-	choline phosphotransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-39300548-2	chr12	39300448	39300648	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	516837.0	NM_001163154	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	0.311829084138327	-0.263908740085309	-0.26904969485667	0.564236102911906	-0.278673146569715	-0.262752485683497	-0.267914186938759	-0.272333177197701	-3.84077018254813	0.12366209018498	1
Merged-chr14-47351643-3	chr14	47351557	47351757	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR1B|LTR|ERV1	-22203.0	NM_010705	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	3.81529653482448	2.52054421235467	3.47701681216076	3.46780110738399	5.41296659011401	5.32514468062002	5.1407358480733	5.67133235249003	2.5002739765005	7.09545478656468e-10	1.20468773390382e-07
Merged-chr18-61267150-2	chr18	61267067	61267267	+	721.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146086, intron 17 of 21)	intron (NM_146086, intron 17 of 21)	46668.0	NM_146086	225600.0	Mm.391106	NM_146086	ENSMUSG00000024575	Pde6a	Pdea|nmf282	phosphodiesterase 6A, cGMP-specific, rod, alpha	protein-coding	1.44662380161223	1.7436229857342	2.05368737353795	0.950843231770363	1.08887392460084	0.973871946570038	1.31337471264925	1.53429145760173	-1.49532895501689	0.250970773212362	0.74894342252605
Merged-chr6-143130595-4	chr6	143130494	143130694	+	993.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153819, intron 7 of 8)	intron (NR_153819, intron 7 of 8)	23337.0	NR_153819	102633311.0	Mm.333484	NR_153819		Gm31108	Gm31169	predicted gene, 31108	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-119358304-3	chr6	119358193	119358393	+	999.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355692, intron 6 of 7)	intron (NM_001355692, intron 6 of 7)	-27527.0	NM_172492	211187.0	Mm.121498	NM_172492	ENSMUSG00000055003	Lrtm2	A230084J22|AI841794	leucine-rich repeats and transmembrane domains 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56620254-2	chr17	56620154	56620354	+	570.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_028782, exon 6 of 18)	exon (NM_028782, exon 6 of 18)	6649.0	NM_028782	74142.0	Mm.329136	NM_028782	ENSMUSG00000041168	Lonp1	1200017E13Rik|LON|Prss15	lon peptidase 1, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-69688875-2	chr1	69688775	69688975	+	648.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2915.0	NM_011770	22779.0	Mm.106343	NM_011770	ENSMUSG00000025997	Ikzf2	A730095J18Rik|Helios|Zfpn1a2|Znfn1a2	IKAROS family zinc finger 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-9011154-4	chr11	9011070	9011270	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001303532)	promoter-TSS (NM_001303532)	21.0	NM_001303610	15574.0	Mm.42201	NM_008316	ENSMUSG00000020413	Hus1	-	HUS1 checkpoint clamp component	protein-coding	3.6285494634852	3.83348808481029	4.52368227188074	4.17618506468988	4.00666986148617	3.22696442283505	4.41869308336084	3.90816817861839	-0.16779033956795	0.727011657075855	0.998431161219273
Merged-chr3-41468080-3	chr3	41468013	41468213	+	958.805542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	25086.0	NR_040385	78706.0	Mm.366094	NR_040385	ENSMUSG00000097639	Platr4	C430002E04Rik	pluripotency associated transcript 4	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-44646062-4	chr13	44645969	44646169	+	915.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-84705.0	NM_021878	16468.0	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-23811994-3	chr18	23811944	23812144	+	768.377747	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153058, intron 1 of 6)	intron (NM_153058, intron 1 of 6)	8074.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191740758-2	chr1	191740658	191740858	+	550.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001134829, intron 2 of 7)	intron (NM_001134829, intron 2 of 7)	22363.0	NM_001134829	226856.0	Mm.277958	NM_172266	ENSMUSG00000026623	Lpgat1	AI649174|AW112037|BC013667	lysophosphatidylglycerol acyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-126829940-3	chr3	126829842	126830042	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025438, intron 14 of 18)	intron (NM_001025438, intron 14 of 18)	113444.0	NM_001034168	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	3.68396974883132	3.38268273005556	3.25203150329678	3.569916981576	5.20540047532517	5.21029682251224	4.84040732450755	5.50901944755725	2.20086722302577	3.0040673792828e-08	3.08938289285443e-06
Merged-chr10-93485236-2	chr10	93485114	93485314	+	972.583374	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001313897)	TTS (NM_001313897)	-3554.0	NM_010401	15109.0	Mm.13000	NM_010401	ENSMUSG00000020017	Hal	Hsd|his|histidase	histidine ammonia lyase	protein-coding	1.9578484828498	1.20075712575923	2.12607353850866	2.33030300095051	1.33084039291193	1.82683838446798	1.90837349758884	1.96903427855087	-0.54999759113286	0.601569580186861	0.973338823574839
Merged-chr2-125782785-4	chr2	125782687	125782887	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177608)	promoter-TSS (NM_177608)	83.0	NM_177608	70354.0	Mm.138091	NM_133725	ENSMUSG00000035093	Secisbp2l	3110001I20Rik|AI504340|C630011I23	SECIS binding protein 2-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-108081657-2	chr4	108081557	108081757	+	644.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011327, intron 10 of 15)	Lx6|LINE|L1	-5700.0	NR_105823	102465213.0		NR_105823	ENSMUSG00000098980	Mir6397	Gm28004|mmu-mir-6397	microRNA 6397	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-110934859-3	chr12	110934760	110934960	+	815.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175336, intron 10 of 20)	intron (NM_175336, intron 10 of 20)	43758.0	NM_001361917	74251.0	Mm.250989	NM_175207	ENSMUSG00000037904	Ankrd9	2500003O20Rik	ankyrin repeat domain 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-79572599-4	chr3	79572500	79572700	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_152118)	TTS (NR_152118)	4408.0	NR_152118	75879.0	Mm.410800	NR_152118		4930589L23Rik	-	RIKEN cDNA 4930589L23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-46389330-5	chr4	46389187	46389387	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347095, intron 1 of 4)	CpG	136.0	NM_029086	74753.0	Mm.45973	NM_029086	ENSMUSG00000028331	Trmo	5830415F09Rik|AV014846|Nap1	tRNA methyltransferase O	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-76199203-1	chr13	76199103	76199303	+	559.0	f0_balb.idr	Intergenic	RMER20B|LTR|ERVK	100469.0	NM_001081352	218343.0	Mm.277964	NM_001081352	ENSMUSG00000033991	Ttc37	-	tetratricopeptide repeat domain 37	protein-coding	0.142972198234678	0.170880620128183	0.161880435968965	0.15484373683538	0.601403108566283	1.31217969245533	0.16387693152988	0.788214110935158	4.46676666552634	0.0227075027191181	1
Merged-chr16-52093551-3	chr16	52093451	52093651	+	845.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033238, intron 3 of 17)	intron (NM_001033238, intron 3 of 17)	62002.0	NM_001033238	208650.0	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-102349311-2	chr15	102349211	102349411	+	894.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_153416, intron 2 of 15)	intron (NM_153416, intron 2 of 15)	1448.0	NM_153416	223921.0	Mm.352946	NM_153416	ENSMUSG00000036678	Aaas	AAA|ADRACALA|D030041N15Rik|GL003	achalasia, adrenocortical insufficiency, alacrimia	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-97202111-4	chr3	97202006	97202206	+	941.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25258.0	NM_029933	77578.0	Mm.226175	NM_029933	ENSMUSG00000038256	Bcl9	2610202E01Rik|8030475K17Rik|A330041G23Rik|Gm130	B cell CLL/lymphoma 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-36474513-1	chr5	36474413	36474613	+	553.0	f1_c57bl6.idr	TTS (NM_024478)	TTS (NM_024478)	9328.0	NM_024478	17713.0	Mm.21535	NM_024478	ENSMUSG00000029198	Grpel1	AA408748|mt-GrpE#1|mt-Grpel1	GrpE-like 1, mitochondrial	protein-coding	-1.20406370813143	-1.56956373024278	-1.57884638916872	-1.58647144159385	-1.598104728449	-1.56755213932999	-1.57674499865798	-1.58510656085539	-1.70745470802464	0.626337835847419	1
Merged-chr6-83691274-2	chr6	83691174	83691374	+	718.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13417.0	NM_144943	246278.0	Mm.136079	NM_144943	ENSMUSG00000034783	Cd207	-	CD207 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-151307258-4	chr1	151307161	151307361	+	833.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37225.0	NM_001359262	117198.0	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-5540325-2	chr11	5540225	5540425	+	631.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_134033, intron 2 of 4)	intron (NM_134033, intron 2 of 4)	1892.0	NM_134033	104479.0	Mm.210403	NM_134033	ENSMUSG00000020482	Ccdc117	1110004K02Rik|1700026O03Rik|AU018638|AU042822|AV173073|BC018601	coiled-coil domain containing 117	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70437098-4	chr11	70436928	70437128	+	959.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145429, intron 6 of 14)	intron (NM_145429, intron 6 of 14)	-1227.0	NR_106064	102465670.0		NR_106064	ENSMUSG00000099109	Mir7115	Gm27902|mmu-mir-7115	microRNA 7115	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-35205970-1	chr8	35205870	35206070	+	689.0	f1_c57bl6.idr	Intergenic	Intergenic	-169771.0	NM_177741	244416.0	Mm.247126	NM_177741	ENSMUSG00000046794	Ppp1r3b	6430576E21|AW821953|GL|PTG	protein phosphatase 1, regulatory (inhibitor) subunit 3B	protein-coding	2.02341385974121	2.10950796808747	3.11612447172028	2.4852254916684	1.89975033350447	2.12482421361437	2.85403952209741	1.99344181677062	-0.510871545340658	0.550416695436577	0.958882219733107
Merged-chr15-102470433-4	chr15	102470314	102470514	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001174073)	promoter-TSS (NM_001174073)	-218.0	NM_011042	18521.0	Mm.236513	NM_011042	ENSMUSG00000056851	Pcbp2	AW412548|Hnrpx|alphaCP-2	poly(rC) binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-73546362-2	chr12	73546262	73546462	+	924.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178715)	promoter-TSS (NM_178715)	33.0	NM_178715	238257.0	Mm.251196	NM_178715	ENSMUSG00000034435	Tmem30b	9130011B11Rik	transmembrane protein 30B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-92486927-4	chr5	92486805	92487005	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007644, intron 1 of 11)	Lx8|LINE|L1	18752.0	NM_007644	12492.0	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-77037702-6	chr14	77037598	77037798	+	844.851868	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175369, intron 1 of 5)	intron (NM_175369, intron 1 of 5)	926.0	NM_001310649	108811.0	Mm.102168	NM_175369	ENSMUSG00000034795	Ccdc122	4933415L06Rik	coiled-coil domain containing 122	protein-coding	2.68999202233617	2.93715217421992	2.19316780897824	2.97474940841796	1.54142330152538	2.12404415230186	2.34827850022537	1.81664066345597	-1.69149188235609	0.045338901190157	0.306522992005731
Merged-chr3-132870280-4	chr3	132870173	132870373	+	914.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_102297, intron 1 of 3)	intron (NR_102297, intron 1 of 3)	8323.0	NR_102297	101243624.0	Mm.306256	NR_102297	ENSMUSG00000106230	Gm29811	-	predicted gene, 29811	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-66869739-4	chr14	66869631	66869831	+	811.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001034881, exon 1 of 1)	3' UTR (NM_001034881, exon 1 of 1)	881.0	NM_001034881	432870.0	Mm.425890	NM_001034881	ENSMUSG00000075553	Gm5464	EG432870	predicted gene 5464	protein-coding	-1.7024385483431	-1.81249224917775	-1.82134771053534	-1.82862185015837	-1.70038292649591	-1.81057323376012	-1.81934302819017	-1.82731978264371	0.0376840119903864	0.991491645451152	1
Merged-chr19-11911258-1	chr19	11911158	11911358	+	584.0	f0_balb.idr	Intergenic	Intergenic	-1141.0	NM_172635	225929.0	Mm.42711	NM_172635	ENSMUSG00000046139	Patl1	AV312086|Pat1b	protein associated with topoisomerase II homolog 1 (yeast)	protein-coding	2.42136369329222	2.50853237227638	1.32556617937386	3.01841649379384	1.48700940684436	2.64447660753056	1.82685730158205	2.89989593834975	-0.224352543301452	0.81522480707222	0.998431161219273
Merged-chr14-75060732-4	chr14	75060617	75060817	+	963.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030568, intron 2 of 3)	intron (NR_030568, intron 2 of 3)	44690.0	NM_198642	271221.0	Mm.320280	NM_198642	ENSMUSG00000034959	Rubcnl	5031414D18Rik|Gm744|Gm911|Kiaa0226l	RUN and cysteine rich domain containing beclin 1 interacting protein like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-89006609-4	chr11	89006531	89006731	+	964.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009546, intron 2 of 8)	MLT1J|LTR|ERVL-MaLR	7228.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	2.47133142624074	2.0361089242222	1.30356583853103	2.19426820769476	2.90427231084386	2.48927639765335	1.31170894945611	2.92597317653891	1.0454539210982	0.28708887258564	0.792323024064372
Merged-chr10-81328545-2	chr10	81328445	81328645	+	684.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009325)	promoter-TSS (NM_009325)	-158.0	NM_009325	21390.0	Mm.4545	NM_009325	ENSMUSG00000034881	Tbxa2r	TP|TXA2-R	thromboxane A2 receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-57889955-3	chr15	57889728	57889928	+	661.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024207, intron 1 of 7)	intron (NM_024207, intron 1 of 7)	2590.0	NM_024207	67819.0	Mm.289387	NM_024207	ENSMUSG00000022365	Derl1	1110021N07Rik|AI195141|AW551338|Derlin-1	Der1-like domain family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-74236460-4	chr1	74236361	74236561	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029711)	promoter-TSS (NM_029711)	-56.0	NM_001357387	76709.0	Mm.337038	NM_029711	ENSMUSG00000006304	Arpc2	2210023N03Rik|34kDa|p34-Arc	actin related protein 2/3 complex, subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-43322089-1	chr18	43321989	43322189	+	561.0	f0_balb.idr	3' UTR (NM_001291455, exon 14 of 14)	3' UTR (NM_001291455, exon 14 of 14)	51183.0	NM_001136086	22240.0	Mm.8180	NM_009468	ENSMUSG00000024501	Dpysl3	CRMP-4|DRP-3|TUC4|ULIP-1|Ulip|Ulip1	dihydropyrimidinase-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83687304-4	chr11	83687201	83687401	+	922.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16755.0	NM_001081957	100034251.0	Mm.24097	NM_001081957	ENSMUSG00000069792	Wfdc17	Amwap|Gm11428	WAP four-disulfide core domain 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-3358975-2	chr18	3358875	3359075	+	730.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_033457, intron 1 of 1)	intron (NR_033457, intron 1 of 1)	-21386.0	NM_001110852	12916.0	Mm.5244	NM_013498	ENSMUSG00000063889	Crem	ICER|ICERI	cAMP responsive element modulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31794673-2	chr14	31794573	31794773	+	622.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001024604, intron 1 of 27)	intron (NM_001024604, intron 1 of 27)	35742.0	NM_001024604	105522.0	Mm.37660	NM_001024604	ENSMUSG00000014496	Ankrd28	AI465466|AI604979|E430019N21Rik|mKIAA0379	ankyrin repeat domain 28	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-122649225-1	chr3	122649125	122649325	+	601.0	f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-29511.0	NM_001114665	214459.0	Mm.209491	NM_153118	ENSMUSG00000039735	Fnbp1l	2610318I01Rik|AW548221|TOCA1|toca-1	formin binding protein 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-13320527-1	chr8	13320427	13320627	+	544.0	f1_balb.idr	intron (NM_172282, intron 12 of 12)	intron (NM_172282, intron 12 of 12)	-18224.0	NM_001291765	21781.0	Mm.925	NM_009361	ENSMUSG00000038482	Tfdp1	Dp1|Drtf1	transcription factor Dp 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-7960323-4	chr5	7960224	7960424	+	884.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_054098)	promoter-TSS (NM_054098)	-148.0	NM_054098	117167.0	Mm.31403	NM_054098	ENSMUSG00000012428	Steap4	1110021O17Rik|AI481214|Tiarp|Tnfaip9	STEAP family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-59993685-1	chr1	59993585	59993785	+	561.0	f1_balb.idr	intron (NM_001357296, intron 10 of 10)	intron (NM_001357296, intron 10 of 10)	49437.0	NM_001357296	70375.0	Mm.17834	NM_027407	ENSMUSG00000026018	Ica1l	1700030B17Rik|Als2cr15|b2b3465Clo	islet cell autoantigen 1-like	protein-coding	-1.09181015755574	-1.07127863322078	-1.08228658123665	-1.08871065290069	-0.717292667659083	-1.06889316496499	-0.759591785671599	-1.08838358103585	2.67668263353115	0.403877806619409	1
Merged-chr3-121844795-3	chr3	121844687	121844887	+	793.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29485.0	NM_008991	19299.0	Mm.399042	NM_008991	ENSMUSG00000028127	Abcd3	AI313901|AU018866|AW146054|PMP68|PMP70|Pxmp1	ATP-binding cassette, sub-family D (ALD), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-55057050-1	chr6	55056950	55057150	+	589.0	f0_c57.idr	intron (NM_180678, intron 7 of 16)	MTC|LTR|ERVL-MaLR	19049.0	NM_180678	353172.0	Mm.250004	NM_180678	ENSMUSG00000029777	Gars	GENA202|Gena201|Nmf249|Sgrp23	glycyl-tRNA synthetase	protein-coding	-0.734697168562934	-1.28094420828655	-1.29131886204401	-1.29984091153697	-1.31008363841169	-1.2786959775384	-1.28897026783925	-1.29831546875223	-2.42902550944018	0.482518537989684	1
Merged-chr18-12440645-2	chr18	12440551	12440751	+	713.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010680, intron 13 of 74)	intron (NM_010680, intron 13 of 74)	-63548.0	NM_001347461	16774.0	Mm.42012	NM_010680	ENSMUSG00000024421	Lama3	Lama3B|[a]3B	laminin, alpha 3	protein-coding	0.0650025717256246	-0.170985634988321	0.359941184673771	0.220724184750114	-0.0466712841198047	-0.170045714941509	-0.174228130793459	-0.177780977849491	-2.81983737552831	0.208341792368296	1
Merged-chr4-11177743-2	chr4	11177643	11177843	+	651.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MMERGLN-int|LTR|ERV1	-13608.0	NM_001037134	12448.0	Mm.35867	NM_009830	ENSMUSG00000028212	Ccne2	-	cyclin E2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-125150671-2	chr4	125150571	125150771	+	578.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22790.0	NM_153159	230738.0	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-89210251-3	chr15	89210138	89210338	+	971.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1321.0	NM_026813	71474.0	Mm.184055	NM_026813	ENSMUSG00000036561	Ppp6r2	1110033O10Rik|8430411H09Rik|B230107H12Rik|Pp6r2|Saps2	protein phosphatase 6, regulatory subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-82877508-1	chr15	82877408	82877608	+	541.0	f1_c57bl6.idr	intron (NM_001114140, intron 1 of 5)	MIR|SINE|MIR	20953.0	NR_027799	21378.0	Mm.417272	NR_027799		Tbrg3	TB-11	transforming growth factor beta regulated gene 3	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-53574428-2	chr6	53574404	53574604	+	866.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172728, intron 1 of 6)	intron (NM_172728, intron 1 of 6)	1130.0	NM_172728	231991.0	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	-0.467946159968293	-0.592170854369514	-0.595307966328923	-0.196801239548902	-0.148293386657411	-0.591461400004392	-0.59461749249763	-0.597296754735162	-0.132791131029636	0.960827604290502	1
Merged-chr15-86250468-3	chr15	86250373	86250573	+	909.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145476, intron 4 of 12)	intron (NM_145476, intron 4 of 12)	-27202.0	NM_001358062	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-57130639-4	chr9	57130440	57130640	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028636)	promoter-TSS (NM_028636)	-237.0	NM_028636	73744.0	Mm.30110	NM_028636	ENSMUSG00000032295	Man2c1	1110025H24Rik	mannosidase, alpha, class 2C, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-122067815-2	chr7	122067715	122067915	+	953.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026140)	promoter-TSS (NM_026140)	617.0	NM_138589	28018.0	Mm.282122	NM_138589	ENSMUSG00000030870	Ubfd1	AI467302|D7Wsu105e|D7Wsu128e|Ubph	ubiquitin family domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-102461277-4	chr15	102461260	102461460	+	848.6416630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025385, intron 4 of 4)	intron (NM_025385, intron 4 of 4)	2190.0	NM_025385	66151.0	Mm.393955	NM_025385	ENSMUSG00000023048	Prr13	1110020C13Rik|2010324E22Rik	proline rich 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-24363731-4	chr18	24363626	24363826	+	795.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24360.0	NR_152129	328919.0	Mm.118671	NR_152129		Gm38410	9530053H22	predicted gene, 38410	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-102327223-2	chr15	102327123	102327323	+	647.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027044, intron 3 of 5)	intron (NM_027044, intron 3 of 5)	1107.0	NM_027044	56612.0	Mm.158264	NM_020031	ENSMUSG00000001289	Pfdn5	1190001O17Rik|1700010A06Rik|D15Ertd697e|Eig1|MM-1	prefoldin 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10685767-2	chr19	10685667	10685867	+	932.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_131163)	TTS (NR_131163)	974.0	NR_131163	72305.0	Mm.383489	NR_131163	ENSMUSG00000114772	2210404E10Rik	-	RIKEN cDNA 2210404E10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-34855850-4	chr1	34855745	34855945	+	959.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357425, intron 2 of 8)	(TTTTG)n|Simple_repeat|Simple_repeat	5856.0	NM_001357425	226971.0	Mm.292751	NM_145516	ENSMUSG00000026123	Plekhb2	2310009M15Rik|AU018239|Evt2|Phdc|evt-2	pleckstrin homology domain containing, family B (evectins) member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-86581492-4	chr11	86581410	86581610	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	2648.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71002240-1	chr17	71002140	71002340	+	1000.0	f0_c57.idr	5' UTR (NM_026064, exon 1 of 4)	5' UTR (NM_026064, exon 1 of 4)	293.0	NM_026064	67268.0	Mm.489605	NM_026064	ENSMUSG00000024048	Myl12a	2900073G15Rik|AI838292|C80200	myosin, light chain 12A, regulatory, non-sarcomeric	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16284321-2	chr7	16284221	16284421	+	625.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001136471, exon 3 of 14)	exon (NM_001136471, exon 3 of 14)	338.0	NM_172297	243846.0	Mm.482401	NM_172297	ENSMUSG00000041375	Ccdc9	2600011L02Rik	coiled-coil domain containing 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-142338915-2	chr7	142338838	142339038	+	840.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177265, intron 3 of 3)	intron (NM_177265, intron 3 of 3)	33321.0	NM_177265	320802.0	Mm.154486	NM_177265	ENSMUSG00000045777	Ifitm10	6330512M04Rik|AI848576|DSPA3	interferon induced transmembrane protein 10	protein-coding	-0.360384528221126	0.110854929576365	-0.31934811928457	-0.494308875403484	-0.498226824149704	-0.295075201054699	-0.490731918980868	-0.493823572455823	-2.41106926582454	0.321564425131145	1
Merged-chr12-86878596-2	chr12	86878496	86878696	+	668.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6218.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-170355122-3	chr2	170355024	170355224	+	888.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029815, intron 11 of 12)	MLT1B|LTR|ERVL-MaLR	-1237.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-107962102-2	chr5	107962002	107962202	+	659.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026062, intron 1 of 4)	intron (NM_026062, intron 1 of 4)	24975.0	NM_026062	67266.0	Mm.277897	NM_026062	ENSMUSG00000029270	Fam69a	2900024C23Rik|AI315274	family with sequence similarity 69, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171388531-4	chr1	171388413	171388613	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001005508)	promoter-TSS (NM_001005508)	-447.0	NM_001005508	226652.0	Mm.251048	NM_001005508	ENSMUSG00000048865	Arhgap30	6030405P05Rik|Gm102|mFLJ00267	Rho GTPase activating protein 30	protein-coding	4.28662674345793	4.35798464454357	4.80483247100504	3.71427551943199	3.88088948101037	4.13242733638463	4.067400074781	3.65410964018322	-0.541032598771466	0.22256300787328	0.714202386450601
Merged-chr17-6079811-4	chr17	6079689	6079889	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181392)	promoter-TSS (NM_181392)	-39.0	NM_181392	66467.0	Mm.303441	NM_181392	ENSMUSG00000034345	Gtf2h5	2700017P07Rik|2810432H05Rik|D17Wsu155e	general transcription factor IIH, polypeptide 5	protein-coding	4.72829844693292	3.92798559426367	3.02809590964609	3.95143953720424	3.89658933691601	3.71312789945301	3.17997887024664	3.63929401316566	-0.593379753414838	0.267089289187929	0.769922980421045
Merged-chr7-44837739-2	chr7	44837730	44837930	+	860.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001171024, intron 5 of 8)	intron (NM_001171024, intron 5 of 8)	1542.0	NM_010215	14204.0	Mm.2565	NM_010215	ENSMUSG00000074141	Il4i1	Fig1|Fig1-ps|LAAO|LAO	interleukin 4 induced 1	protein-coding	-2.18138529563533	-2.15523716995652	-2.1631445789866	-2.16963996020037	-2.05513010215571	-2.15352360143315	-2.16135451490766	-2.16847729006863	0.759018020146679	0.829933115115583	1
Merged-chr4-134927874-2	chr4	134927774	134927974	+	850.900024	f1_balb.idr|f1_c57bl6.idr	TTS (NM_023665)	TTS (NM_023665)	-3106.0	NM_026780	68592.0	Mm.29989	NM_026780	ENSMUSG00000028821	Syf2	1110018L13Rik|Cbpin|D4Bwg1551e|Gcipip|Ntc31|mp29|p29	SYF2 homolog, RNA splicing factor (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-132684051-4	chr3	132683912	132684112	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163455)	promoter-TSS (NM_001163455)	-132.0	NM_001163455	271981.0	Mm.257864	NM_173032	ENSMUSG00000028030	Tbck	1700120J03Rik|9430001M19|A630047E20Rik|C030007I09Rik|Tbckl	TBC1 domain containing kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-14210246-4	chr10	14210140	14210340	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	243861.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-22928996-4	chr11	22928837	22929037	+	947.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361661, intron 2 of 2)	MTE2b|LTR|ERVL-MaLR	-43068.0	NM_011663	22183.0	Mm.29542	NM_011663	ENSMUSG00000044068	Zrsr1	D11Ncvs75|Irlgs2|SP2|U2af1-rs1|U2afbp-rs	zinc finger (CCCH type), RNA binding motif and serine/arginine rich 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-36525034-2	chr11	36524934	36525134	+	610.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011856, intron 2 of 28)	intron (NM_011856, intron 2 of 28)	419207.0	NM_001290702	23964.0	Mm.439889	NM_011856	ENSMUSG00000049336	Tenm2	Odz2|Odz3|Ten-2|Ten-m2	teneurin transmembrane protein 2	protein-coding	0.0801833927473548	-0.0536486147143721	-0.0595025578042647	0.594618997835159	0.761707200699056	-0.0523321239961037	-0.0582094813478641	-0.0632420079224639	0.251044048300848	0.911683828813055	1
Merged-chr7-122720715-2	chr7	122720615	122720815	+	607.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019430, intron 1 of 3)	intron (NM_019430, intron 1 of 3)	48971.0	NM_019430	54376.0	Mm.444212	NM_019430	ENSMUSG00000066189	Cacng3	-	calcium channel, voltage-dependent, gamma subunit 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-56696166-3	chr15	56696076	56696276	+	651.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1630.0	NM_008216	15117.0	Mm.5148	NM_008216	ENSMUSG00000022367	Has2	-	hyaluronan synthase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-92215096-1	chr1	92214996	92215196	+	570.0	f1_c57bl6.idr	Intergenic	Intergenic	-34755.0	NM_207225	208727.0	Mm.318567	NM_207225	ENSMUSG00000026313	Hdac4	4932408F19Rik|HD4	histone deacetylase 4	protein-coding	1.09475896009933	0.626611718388221	1.09179367618116	0.609997693199635	1.1985317272556	1.14828397050561	0.619326698898799	1.17452134898064	0.859356989934248	0.58476809864202	1
Merged-chr16-78200280-4	chr16	78200181	78200381	+	951.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55173.0	NR_045698	100503619.0	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114913070-4	chr11	114912958	114913158	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21328.0	NM_001347651	217304.0	Mm.185355	NM_199221	ENSMUSG00000063193	Cd300lb	CLM-7|Clm7|Gm253|LMIR5	CD300 molecule like family member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-142152567-1	chr4	142152467	142152667	+	892.0	f1_c57bl6.idr	intron (NM_001109684, intron 3 of 6)	intron (NM_001109684, intron 3 of 6)	57641.0	NM_144531	71529.0	Mm.255986	NM_144531	ENSMUSG00000040606	Kazn	2310007B04Rik|9030409G11Rik|AI256607|AI666764|AW061099|Kaz|Kazrin	kazrin, periplakin interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-104627343-2	chr8	104627243	104627443	+	569.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_019662)	TTS (NM_019662)	-2947.0	NM_001252628	12556.0	Mm.19423	NM_007663	ENSMUSG00000031881	Cdh16	-	cadherin 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-44704348-4	chr10	44704265	44704465	+	997.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-245617.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-31031182-2	chr9	31031082	31031282	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001115130, intron 1 of 5)	CpG	538.0	NM_172765	235132.0	Mm.239355	NM_172765	ENSMUSG00000047412	Zbtb44	6030404E16Rik|Btbd15|E230011F09	zinc finger and BTB domain containing 44	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96725587-2	chr3	96725487	96725687	+	710.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028925, intron 2 of 14)	intron (NM_028925, intron 2 of 14)	1852.0	NM_028925	74414.0	Mm.276043	NM_028925	ENSMUSG00000028099	Polr3c	4933407E01Rik|RPC3|RPC62	polymerase (RNA) III (DNA directed) polypeptide C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-92484023-4	chr13	92483944	92484144	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163627)	promoter-TSS (NM_001163627)	-13.0	NM_001163627	73942.0	Mm.85935	NM_001163627	ENSMUSG00000034334	Fam151b	4930405M20Rik	family with sequence similarity 151, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96402032-4	chr3	96401917	96402117	+	773.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	12816.0	NR_001579	21748.0		NR_001579	ENSMUSG00000064796	Terc	mTER|mTR	telomerase RNA component	ncRNA	1.01302757656546	2.58171913704601	1.94365215694633	1.99501248081292	1.54884261451268	1.56514585422545	1.9602034333893	1.04806434658685	-1.21629254412803	0.294936647286912	0.798191705447
Merged-chr9-21926943-4	chr9	21926834	21927034	+	994.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164614)	promoter-TSS (NM_001164614)	354.0	NM_001253869	235043.0	Mm.253329	NM_178577	ENSMUSG00000040883	Tmem205	-	transmembrane protein 205	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-166002326-1	chr1	166002226	166002426	+	951.0	f0_balb.idr	intron (NM_198932, intron 1 of 15)	CpG	308.0	NM_011137	18986.0	Mm.245261	NM_011137	ENSMUSG00000026565	Pou2f1	2810482H01Rik|NF-A1|Oct-1|Oct1|Otf-1|Otf1	POU domain, class 2, transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-57947765-1	chr4	57947665	57947865	+	1000.0	f0_c57.idr	intron (NM_011660, intron 3 of 4)	intron (NM_011660, intron 3 of 4)	8646.0	NM_011660	22166.0	Mm.260618	NM_011660	ENSMUSG00000028367	Txn1	ADF|AW550880|Trx1|Txn	thioredoxin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-5445659-4	chr11	5445531	5445731	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080924)	promoter-TSS (NM_001080924)	-784.0	NM_001080924	407821.0	Mm.216313	NM_001080924	ENSMUSG00000041961	Znrf3	Gm1167	zinc and ring finger 3	protein-coding	5.01757994138823	4.49990884455573	4.84118322347743	4.94108867798194	4.60993945951576	4.7503748582084	4.44532427180119	4.69951252054167	-0.265692540917908	0.438222487623851	0.908612234382228
Merged-chr14-122464746-6	chr14	122464792	122464992	+	882.944458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_022987, exon 1 of 2)	exon (NM_022987, exon 1 of 2)	766.0	NM_022987	65100.0	Mm.390761	NM_022987	ENSMUSG00000041703	Zic5	1700049L20Rik|Opr	zinc finger protein of the cerebellum 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-52756402-4	chr3	52756283	52756483	+	970.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038079, intron 1 of 3)	intron (NR_038079, intron 1 of 3)	16659.0	NR_038079	329639.0	Mm.131245	NR_038079	ENSMUSG00000102785	Gm2447	100039832|A530017F20	predicted gene 2447	ncRNA	4.39019388191281	5.02651223597503	4.39844615821016	4.03633733778819	2.84651263858663	3.10652508009302	2.49689896417469	2.74180797201838	-2.46344337572171	2.77314412201136e-06	0.000154514782550583
Merged-chr11-100471965-2	chr11	100471865	100472065	+	565.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_155072, intron 1 of 2)	CpG	817.0	NR_155072	217194.0	Mm.183320	NM_172565	ENSMUSG00000048732	Klhl11	BC011167	kelch-like 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-41275048-1	chr4	41274948	41275148	+	1000.0	f0_balb.idr	promoter-TSS (NM_026872)	promoter-TSS (NM_026872)	87.0	NM_026872	68926.0	Mm.41864	NM_026872	ENSMUSG00000028433	Ubap2	1190005K07Rik|AA408600|AU045235|UBAP-2|mKIAA1491	ubiquitin-associated protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-76318567-2	chr12	76318467	76318667	+	893.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_138745, intron 27 of 27)	intron (NM_138745, intron 27 of 27)	-6324.0	NM_001101471	238276.0	Mm.311452	NM_001101471	ENSMUSG00000021057	Akap5	3526401B18Rik|AKAP 150|AKAP-5|AKAP150|BB098886|Gm258|P150	A kinase (PRKA) anchor protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-79475328-3	chr8	79475234	79475434	+	825.133362	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-75866.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-40721722-2	chr19	40721622	40721822	+	604.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001304721, intron 3 of 9)	intron (NM_001304721, intron 3 of 9)	61952.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131432100-4	chr1	131432007	131432207	+	905.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081011, intron 3 of 22)	intron (NM_001081011, intron 3 of 22)	95254.0	NM_001081011	14270.0	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45590039-4	chr7	45589943	45590143	+	817.724976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009737)	TTS (NM_009737)	-14867.0	NR_038165	71661.0	Mm.439894	NR_038165	ENSMUSG00000109644	0610005C13Rik	AI182092	RIKEN cDNA 0610005C13 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-53536310-3	chr19	53536213	53536413	+	890.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085390, intron 2 of 3)	intron (NM_001085390, intron 2 of 3)	6995.0	NM_001085390	240672.0	Mm.482424	NM_001085390	ENSMUSG00000034765	Dusp5	Gm337	dual specificity phosphatase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-145176882-2	chr6	145176784	145176984	+	778.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177222, intron 14 of 15)	intron (NM_177222, intron 14 of 15)	31409.0	NM_001361633	16970.0	Mm.843	NM_008511	ENSMUSG00000030263	Lrmp	D6Int3|D6Int4|D6Int5|D6Int7|D6Int8|Jaw1	lymphoid-restricted membrane protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-100397992-4	chr12	100397850	100398050	+	727.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033213, intron 9 of 19)	intron (NM_001033213, intron 9 of 19)	121341.0	NR_045741	100038713.0	Mm.470751	NR_045741	ENSMUSG00000113679	Gm10432	-	predicted gene 10432	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-7496358-4	chr19	7496252	7496452	+	687.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146091, intron 1 of 12)	B2_Mm1a|SINE|B2	1914.0	NM_146091	109168.0	Mm.264016	NM_146091	ENSMUSG00000024759	Atl3	4633402C03Rik|5730596K20Rik|AI465397|AW228836	atlastin GTPase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-181521754-1	chr2	181521654	181521854	+	664.0	f1_c57bl6.idr	intron (NM_001271584, intron 2 of 5)	intron (NM_001271584, intron 2 of 5)	1269.0	NM_001271584	13002.0	Mm.140761	NM_016775	ENSMUSG00000000826	Dnajc5	2610314I24Rik|AU018536|Csp	DnaJ heat shock protein family (Hsp40) member C5	protein-coding	1.67422359161693	1.93464578757334	0.943453523559082	0.699094623945411	1.76846652673314	0.732215676857348	0.715777688925185	0.921600687455812	-0.970084835598438	0.51147456829779	0.94512318675548
Merged-chr11-80175549-4	chr11	80175462	80175662	+	792.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172133, intron 8 of 10)	intron (NM_172133, intron 8 of 10)	-8310.0	NM_028019	71956.0	Mm.22985	NM_028019	ENSMUSG00000020707	Rnf135	0610037N03Rik|2410006N06Rik	ring finger protein 135	protein-coding	-1.8429182434137	-1.8129848525291	-1.82203695700074	-1.54461076807193	-1.84081697472045	-1.81102322372834	-1.81998775896484	-1.82814164409203	-1.43114970378833	0.684630132144154	1
Merged-chr9-25027811-2	chr9	25027711	25027911	+	588.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53603.0	NR_153861	102631612.0	Mm.410759	NR_153861		E130101E03Rik	-	RIKEN cDNA E130101E03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-78709333-1	chr1	78709233	78709433	+	794.75	f0_balb.idr	Intergenic	Intergenic	50893.0	NM_001136226	195434.0	Mm.276016	NM_001001981	ENSMUSG00000079470	Utp14b	4932411L21Rik|jsd	UTP14B small subunit processome component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-95020503-1	chr8	95020403	95020603	+	542.0	f1_c57bl6.idr	intron (NM_173036, intron 1 of 11)	intron (NM_173036, intron 1 of 11)	2811.0	NM_173036	54672.0	Mm.27995	NM_173036	ENSMUSG00000060470	Adgrg3	A030001G24Rik|AW214383|Gpr97|Pb1|Pb99	adhesion G protein-coupled receptor G3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-78484618-3	chr1	78484509	78484709	+	941.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001278075, intron 1 of 17)	MLT1F2|LTR|ERVL-MaLR	4288.0	NR_102758	23874.0	Mm.17898	NM_011811	ENSMUSG00000026245	Farsb	C76708|Farsa|Farsl|Farslb|Frsb	phenylalanyl-tRNA synthetase, beta subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-98867438-4	chr13	98867379	98867579	+	821.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178716, intron 7 of 23)	intron (NM_178716, intron 7 of 23)	23563.0	NM_001048267	238799.0	Mm.173286	NM_178716	ENSMUSG00000009470	Tnpo1	AU021749|D13Ertd688e|IPO2|Kpnb2|MIP|MIP1|TRN	transportin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-69399499-4	chr8	69399413	69399613	+	996.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-3969.0	NR_038043	378466.0	Mm.37846	NM_194351	ENSMUSG00000110444	Gm10033	9330175B10Rik|Gm10311	predicted gene 10033	ncRNA	1.90024933822044	3.08200976468921	2.08190920861924	3.51691447390156	3.36825625113142	3.20984068188493	2.30156986772059	3.94437745470759	0.847872558564745	0.257964678941642	0.757726510023294
Merged-chr4-32370708-2	chr4	32370608	32370808	+	702.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46727.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-80638079-3	chr1	80637988	80638188	+	670.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175291, intron 2 of 55)	intron (NM_175291, intron 2 of 55)	27264.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-3334699-2	chr11	3334599	3334799	+	645.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178149, intron 5 of 5)	ID_B1|SINE|B4	3968.0	NM_178149	216505.0	Mm.390323	NM_178149	ENSMUSG00000034614	Pik3ip1	1500004A08Rik|5830455E04Rik|Crkd|Hgfl	phosphoinositide-3-kinase interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-54922460-2	chr1	54922360	54922560	+	637.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081433, intron 1 of 27)	MIR|SINE|MIR	3927.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-120527726-4	chr1	120527612	120527812	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	-22688.0	NM_010766	17167.0	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	4.87152863073288	5.04621457734694	4.48218158310544	4.54698561172564	4.08648356937415	3.94498102379248	3.53066738792282	3.91969793056667	-1.12508469216215	0.00509252489685129	0.0678890152360242
Merged-chr1-155140262-4	chr1	155140182	155140382	+	838.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008209, intron 1 of 5)	intron (NM_008209, intron 1 of 5)	6532.0	NM_001355063	15064.0	Mm.7580	NM_008209	ENSMUSG00000026471	Mr1	H2ls	major histocompatibility complex, class I-related	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-72255637-4	chr1	72255517	72255717	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155355, intron 1 of 3)	intron (NR_155355, intron 1 of 3)	11624.0	NR_155355	320933.0	Mm.440953	NR_155355		D230017M19Rik	B930094L07Rik	RIKEN cDNA D230017M19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-23874275-4	chr18	23874187	23874387	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162941, intron 5 of 7)	intron (NM_001162941, intron 5 of 7)	70317.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-115765309-2	chr6	115765209	115765409	+	927.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CCAA)n|Simple_repeat|Simple_repeat	-2843.0	NM_001168256	94346.0	Mm.29739	NM_144805	ENSMUSG00000059900	Tmem40	9030407H20Rik|AV091463|W64236	transmembrane protein 40	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122562297-2	chr8	122562197	122562397	+	887.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5718.0	NM_026014	67177.0	Mm.21873	NM_026014	ENSMUSG00000006585	Cdt1	2610318F11Rik|AW545653|C76791|Ris2	chromatin licensing and DNA replication factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-165770933-2	chr1	165770833	165771033	+	983.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_149310, intron 4 of 4)	intron (NR_149310, intron 4 of 4)	7175.0	NM_011804	433375.0	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-181015679-4	chr1	181015560	181015760	+	935.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010145, intron 1 of 8)	intron (NM_010145, intron 1 of 8)	1909.0	NM_001312918	13849.0	Mm.9075	NM_010145	ENSMUSG00000038776	Ephx1	EH|Eph-1|Eph1|Epxh1|mEH	epoxide hydrolase 1, microsomal	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-107229154-3	chr11	107229041	107229241	+	966.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 7 of 9)	B4A|SINE|B4	-39760.0	NM_001161329	68979.0	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-184067130-4	chr1	184067026	184067226	+	880.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022019, intron 2 of 3)	intron (NM_022019, intron 2 of 3)	32745.0	NM_022019	63953.0	Mm.404024	NM_022019	ENSMUSG00000039384	Dusp10	2610306G15Rik|AI158871|MKP-5|MKP5	dual specificity phosphatase 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-36061325-2	chr17	36061225	36061425	+	682.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2954.0	NM_001199967	100529082.0	Mm.484641	NM_001199967	ENSMUSG00000079492	Gm11127	-	predicted gene 11127	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-155462704-3	chr1	155462600	155462800	+	612.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45256.0	NM_011273	19775.0	Mm.266215	NM_011273	ENSMUSG00000026469	Xpr1	Rmc-1|Rmc1|Sxv|Syg1|XR	xenotropic and polytropic retrovirus receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-67826197-4	chr18	67826100	67826300	+	895.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027556, intron 14 of 45)	intron (NM_027556, intron 14 of 45)	26093.0	NM_027556	70799.0	Mm.30857	NM_027556	ENSMUSG00000024542	Cep192	4631422C13Rik|D430014P18Rik	centrosomal protein 192	protein-coding	2.4222237930825	2.93033969564572	2.10474239186885	2.14514746241477	1.18531297204536	1.04561094361047	1.01691754966886	0.991524782698907	-5.03187132102119	0.000126453799489628	0.00369446271008903
Merged-chr5-123130886-2	chr5	123130786	123130986	+	572.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175092, intron 2 of 4)	intron (NM_175092, intron 2 of 4)	1743.0	NM_175092	23912.0	Mm.253876	NM_175092	ENSMUSG00000029449	Rhof	AI845056|AV026554|Arhf|Ifld1|Rif	ras homolog family member F (in filopodia)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-102067706-2	chr5	102067606	102067806	+	907.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 1 of 66)	intron (NM_172882, intron 1 of 66)	2215.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	1.6077519401081	0.861148751365581	1.2501125427409	2.10856367420117	0.812339241612008	1.10769128918042	1.67484848645389	1.22052959101854	-1.04675973526883	0.429295130685134	0.903553324188723
Merged-chr5-90596376-1	chr5	90596276	90596476	+	754.0	f0_balb.idr	intron (NM_001252661, intron 13 of 13)	intron (NM_001252661, intron 13 of 13)	35167.0	NM_001252661	622307.0	Mm.389654	NM_001252661	ENSMUSG00000070690	5830473C10Rik	Arg|Gm17754	RIKEN cDNA 5830473C10 gene	protein-coding	0.134669359222395	-0.0028473734564913	-0.00938177729143455	-0.0144532953419951	0.761852181121397	-0.00138029650113849	0.822124187054439	-0.013565374437469	3.35721711998013	0.12647452094538	1
Merged-chr5-65391484-4	chr5	65391371	65391571	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011292)	promoter-TSS (NM_011292)	-26.0	NM_024471	79464.0	Mm.195776	NM_024471	ENSMUSG00000029199	Lias	2900022L22Rik|4933425M12Rik|7a5ex|C77512|LS|lip-syn	lipoic acid synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-122858131-4	chr4	122858099	122858299	+	738.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001358036)	TTS (NM_001358036)	21972.0	NM_008917	19063.0	Mm.277719	NM_008917	ENSMUSG00000028657	Ppt1	9530043G02Rik|AA960502|C77813|CLN1|D4Ertd184e|INCL|PPT	palmitoyl-protein thioesterase 1	protein-coding	0.767078799229567	0.76630923989613	0.405518706155944	0.399942406108739	0.775926217177794	0.774100895137571	1.08659181393686	0.400917001167576	1.10758917703656	0.521099490874364	1
Merged-chr6-83077869-1	chr6	83077769	83077969	+	591.0	f0_balb.idr	promoter-TSS (NM_197992)	promoter-TSS (NM_197992)	-521.0	NM_197992	69837.0	Mm.12261	NM_197992	ENSMUSG00000069678	Pcgf1	2010002K04Rik|AU024121|Nspc1	polycomb group ring finger 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-56811892-4	chr14	56811798	56811998	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253753)	promoter-TSS (NM_001253753)	-91.0	NR_152252	100503842.0	Mm.297636	NR_152252	ENSMUSG00000100017	2410022M11Rik	-	RIKEN cDNA 2410022M11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-177956923-2	chr2	177956823	177957023	+	599.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001190302, intron 1 of 4)	RMER17B|LTR|ERVK	365.0	NM_001282028	665211.0	Mm.441314	NM_001190302	ENSMUSG00000078862	Gm14326	-	predicted gene 14326	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-87635564-4	chr16	87635456	87635656	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63398.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-94948314-2	chr15	94948214	94948414	+	697.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_178789, intron 5 of 7)	intron (NM_178789, intron 5 of 7)	201004.0	NR_015482	100043315.0	Mm.159041	NR_015482	ENSMUSG00000100603	LOC100043315	-	uncharacterized LOC100043315	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-55813714-2	chr4	55813614	55813814	+	553.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-281239.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117846965-2	chr11	117846865	117847065	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-2272.0	NM_001012273	11799.0	Mm.8552	NM_009689	ENSMUSG00000017716	Birc5	AAC-11|Api4|TIAP|survivin40	baculoviral IAP repeat-containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-117080554-4	chr2	117080453	117080653	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40518.0	NM_001277256	114715.0	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-36311902-2	chr13	36311802	36312002	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039189, intron 3 of 5)	intron (NM_001039189, intron 3 of 5)	194259.0	NM_001039189	69955.0	Mm.70690	NM_024274	ENSMUSG00000021420	Fars2	Fars1|pheRS	phenylalanine-tRNA synthetase 2 (mitochondrial)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-57071322-1	chr9	57071222	57071422	+	583.0	f0_balb.idr	promoter-TSS (NM_001110351)	promoter-TSS (NM_001110351)	644.0	NR_045886	100038566.0	Mm.361900	NR_045886		Gm10658	-	predicted gene 10658	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-77552156-2	chr10	77552056	77552256	+	615.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008404, intron 8 of 15)	intron (NM_008404, intron 8 of 15)	21808.0	NM_008404	16414.0	Mm.1137	NM_008404	ENSMUSG00000000290	Itgb2	2E6|AI528527|Cd18|LAD|LCAMB|Lfa1|MF17	integrin beta 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-142604195-2	chr3	142604095	142604295	+	806.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_010259, exon 6 of 11)	exon (NM_010259, exon 6 of 11)	9348.0	NM_010259	14468.0	Mm.457978	NM_010259	ENSMUSG00000040264	Gbp2b	Gbp-1|Gbp1|Mag-1|Mpa-1|Mpa1	guanylate binding protein 2b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-139201777-5	chr4	139201684	139201884	+	833.919983	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	7673.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	2.90105281179043	3.15449234331701	2.4703345722484	3.52300503661433	2.65348363260614	2.57455559890131	2.87405966489726	2.9822098852193	-0.533239167109635	0.427147031232664	0.902392427013133
Merged-chr1-136117496-2	chr1	136117396	136117596	+	711.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081023, intron 40 of 43)	intron (NM_001081023, intron 40 of 43)	13687.0	NR_046170	329253.0	Mm.487858	NR_046167	ENSMUSG00000086264	Gm15850	6530439I21	predicted gene 15850	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83448889-2	chr6	83448789	83448989	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_028382)	TTS (NR_028382)	7134.0	NR_028382	320775.0	Mm.434334	NR_028382	ENSMUSG00000051844	B230319C09Rik	-	RIKEN cDNA B230319C09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-24151450-4	chr10	24151333	24151533	+	973.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016797, intron 1 of 9)	intron (NM_016797, intron 1 of 9)	2116.0	NM_016797	53331.0	Mm.248042	NM_016797	ENSMUSG00000019998	Stx7	AI315064|AI317144|AW107239|Syn7	syntaxin 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-120815451-4	chr10	120815318	120815518	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177092, intron 5 of 6)	intron (NM_177092, intron 5 of 6)	-42211.0	NR_038023	100504616.0	Mm.451174	NR_038023	ENSMUSG00000087480	Gm15910	-	predicted gene 15910	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-54739535-1	chr14	54739435	54739635	+	602.0	f0_balb.idr	intron (NM_016972, intron 3 of 10)	intron (NM_016972, intron 3 of 10)	-27361.0	NM_207131	110794.0	Mm.236223	NM_207131	ENSMUSG00000052435	Cebpe	C/EBPe|C/EBPepsilon|CRP1|Gm294	CCAAT/enhancer binding protein (C/EBP), epsilon	protein-coding	1.33478262882849	1.85669413110577	1.00082131440009	1.53075217014135	1.78708623237559	0.80264675360573	0.787787395747255	0.774889607271892	-1.16538749702701	0.417238726607503	0.897326543579985
Merged-chr16-91607180-4	chr16	91607061	91607261	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9481.0	NM_030018	77975.0	Mm.290341	NM_030018	ENSMUSG00000022964	Tmem50b	AU015466|AU019872|B230114J08Rik	transmembrane protein 50B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120573856-2	chr11	120573756	120573956	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011032)	promoter-TSS (NM_011032)	-603.0	NM_011032	18453.0	Mm.16660	NM_011032	ENSMUSG00000025130	P4hb	ERp59|PDI|Pdia1|Thbp	prolyl 4-hydroxylase, beta polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27748904-2	chr2	27748804	27749004	+	765.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290481, intron 5 of 9)	intron (NM_001290481, intron 5 of 9)	38321.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-65888339-1	chr5	65888239	65888439	+	565.0	f0_balb.idr	intron (NM_001081105, intron 1 of 2)	intron (NM_001081105, intron 1 of 2)	24770.0	NM_001081105	74734.0	Mm.20323	NM_001081105	ENSMUSG00000029204	Rhoh	5830400A04Rik|AU019774|Arhh	ras homolog family member H	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-106552681-2	chr3	106552581	106552781	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286986, intron 2 of 8)	URR1B|DNA|hAT-Charlie	-4879.0	NM_133869	99712.0	Mm.429443	NM_133869	ENSMUSG00000040774	Cept1	9930118K05Rik|mCEPT1	choline/ethanolaminephosphotransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-66063526-2	chr5	66063426	66063626	+	568.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_139065, intron 2 of 6)	intron (NM_139065, intron 2 of 6)	34653.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-73739622-2	chr12	73739522	73739722	+	689.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008856, intron 10 of 13)	intron (NM_008856, intron 10 of 13)	154826.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123399130-4	chr5	123399029	123399229	+	994.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133917, intron 1 of 16)	B2_Mm2|SINE|B2	4331.0	NM_177582	208104.0	Mm.83277	NM_133917	ENSMUSG00000038342	Mlxip	AW228700|Mir|bHLHe36	MLX interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152790353-4	chr1	152790261	152790461	+	979.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-9792.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-84799469-4	chr18	84799376	84799576	+	851.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51862.0	NM_025797	109672.0	Mm.31018	NM_025797	ENSMUSG00000024646	Cyb5a	0610009N12Rik|Cyb5	cytochrome b5 type A (microsomal)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139200568-4	chr5	139200493	139200693	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024451)	promoter-TSS (NM_024451)	-44.0	NM_001256115	77053.0	Mm.210845	NM_024451	ENSMUSG00000036817	Sun1	4632417G13Rik|5730434D03Rik|Unc84a|mKIAA0810	Sad1 and UNC84 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-67473355-4	chr17	67473250	67473450	+	929.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-118859.0	NM_001357625	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120597790-7	chr11	120597671	120597871	+	832.142883	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025389)	promoter-TSS (NM_025389)	594.0	NM_011568	21681.0	Mm.1886	NM_011568	ENSMUSG00000025134	Alyref	Aly|Ref1|Ref1-I|Refbp1|Tho4|Thoc4	Aly/REF export factor	protein-coding	1.19481534608821	0.385238848608938	0.567358420406711	0.370417892857909	1.0586833686381	0.387110765750394	0.378742389100163	0.947423811079333	0.237867349052546	0.897285205059976	1
Merged-chr5-135763666-2	chr5	135763566	135763766	+	829.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289557, intron 3 of 6)	intron (NM_001289557, intron 3 of 6)	14635.0	NM_001289554	76571.0	Mm.247666	NM_029659	ENSMUSG00000019178	Styxl1	1700011C14Rik|Dusp24|Mkstyx	serine/threonine/tyrosine interacting-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-93362088-3	chr3	93361992	93362192	+	776.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31607.0	NM_009100	20129.0	Mm.1417	NM_009100	ENSMUSG00000041984	Rptn	-	repetin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-71867305-1	chr7	71867205	71867405	+	556.0	f0_balb.idr	Intergenic	Intergenic	-42390.0	NR_130995	78156.0	Mm.243818	NR_130995	ENSMUSG00000108669	4930441H08Rik	-	RIKEN cDNA 4930441H08 gene	ncRNA	2.13224430946592	1.90461167606188	2.21045756787144	1.79908117455	2.14942814745198	2.06208462928616	1.99667120432618	1.48111385835724	-0.204723140240122	0.828446381537966	0.998431161219273
Merged-chr4-45009266-2	chr4	45009166	45009366	+	703.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173399, intron 1 of 1)	ORR1A1|LTR|ERVL-MaLR	3146.0	NM_001163284	230119.0	Mm.44222	NM_173399	ENSMUSG00000049657	Zbtb5	5930421I10|9430083K24Rik|AI646847|mKIAA0354	zinc finger and BTB domain containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-34229213-2	chr11	34229085	34229285	+	659.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_033374, intron 50 of 51)	intron (NM_033374, intron 50 of 51)	-21096.0	NM_023907	14233.0	Mm.32926	NM_023907	ENSMUSG00000047861	Foxi1	5830401E05Rik|FREAC6|Fkh10|HFH-3|Hfh3	forkhead box I1	protein-coding	1.8169287294095	3.72908038562384	2.97910624566632	1.21446187375127	2.67294960410497	3.11292894998255	1.56552592978316	1.50986137977266	-0.711801799165626	0.473507915511541	0.926125823511231
Merged-chr6-86848647-2	chr6	86848547	86848747	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177762)	promoter-TSS (NM_177762)	793.0	NR_028298	67170.0	Mm.119489	NR_028298	ENSMUSG00000100164	2610306M01Rik	-	RIKEN cDNA 2610306M01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34975986-2	chr17	34975886	34976086	+	991.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_013558, intron 1 of 1)	B4|SINE|B4	3283.0	NM_013558	15482.0	Mm.14287	NM_013558	ENSMUSG00000007033	Hspa1l	Hsc70t|Msh5	heat shock protein 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-17263998-1	chr19	17263898	17264098	+	661.0	f1_c57bl6.idr	Intergenic	Intergenic	75507.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	1.76391416046184	0.839541138037907	0.822675807304687	1.69641817150538	1.40426643887553	0.843284300201695	1.05563436350348	2.04272122783892	0.209041842912577	0.881962406173555	0.998431161219273
Merged-chr2-130293712-4	chr2	130293637	130293837	+	965.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2202.0	NM_001110513	228598.0	Mm.32582	NM_152993	ENSMUSG00000053552	Ebf4	Ebf3|O/E-4|Olf-1	early B cell factor 4	protein-coding	2.94017244564424	3.80610887599704	3.74762154279568	2.64007402186125	3.29457902991374	2.05215557793819	4.15320719914893	3.21671499860972	0.0147846534280197	0.982597649337281	0.998431161219273
Merged-chr15-86267166-3	chr15	86267056	86267256	+	828.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145476, intron 4 of 12)	MTE2b|LTR|ERVL-MaLR	-10519.0	NM_001358062	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167720237-2	chr2	167720137	167720337	+	964.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29060.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-77624935-3	chr15	77624864	77625064	+	879.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18322.0	NM_001143686	328563.0	Mm.17957	NM_001143686	ENSMUSG00000091694	Apol11b	A330102K04Rik	apolipoprotein L 11b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-64134645-4	chr1	64134563	64134763	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur2|LINE|L1	-13274.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-54774364-4	chr1	54774257	54774457	+	867.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081433, intron 4 of 27)	intron (NM_001081433, intron 4 of 27)	152030.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-11820023-4	chr19	11819916	11820116	+	878.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_152220)	promoter-TSS (NM_152220)	-613.0	NR_153434	20908.0	Mm.272264	NM_011502	ENSMUSG00000041488	Stx3	Syn-3	syntaxin 3	protein-coding	5.27901058616464	5.22243169767966	4.87563554256024	5.2851934211144	4.91479310072848	4.43502574884058	3.72940086523671	5.58088256728011	-0.401839635318474	0.305610595459383	0.806865344318695
Merged-chr3-109008351-4	chr3	109008250	109008450	+	800.537476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163567, intron 1 of 10)	intron (NM_001163567, intron 1 of 10)	19257.0	NM_001163567	329739.0	Mm.69013	NM_001163567	ENSMUSG00000040339	Fam102b	1600010D10Rik|B430201A12Rik	family with sequence similarity 102, member B	protein-coding	0.183827219635179	0.442102319130742	0.589933107586312	0.196119399452438	0.643387199311461	0.214792940889833	1.43323757677818	0.197398060773515	2.05677689542134	0.27650181227986	1
Merged-chr5-137287190-2	chr5	137287090	137287290	+	916.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1064.0	NM_009599	11423.0	Mm.255464	NM_009599	ENSMUSG00000023328	Ache	-	acetylcholinesterase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-111096004-1	chr10	111095904	111096104	+	737.0	f0_balb.idr	Intergenic	Intergenic	-68798.0	NM_001003717	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-32352127-4	chr4	32352031	32352231	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER119|DNA|hAT-Charlie	-65304.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-110394434-4	chr13	110394360	110394560	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_152804)	promoter-TSS (NM_152804)	-584.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	4.36641847783049	4.85613043657764	4.83587814996383	4.5405424994273	4.67792946714031	4.33332093020053	4.59884246297384	5.36559110210805	0.183602514828794	0.623418803822018	0.980259659844413
Merged-chr7-102384141-3	chr7	102384026	102384226	+	704.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009287, intron 2 of 11)	intron (NM_009287, intron 2 of 11)	-57569.0	NM_009103	20133.0	Mm.197486	NM_009103	ENSMUSG00000030978	Rrm1	RnrM1	ribonucleotide reductase M1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123898726-2	chr5	123898658	123898858	+	729.150024	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-8517.0	NM_026603	68184.0	Mm.28549	NM_026603	ENSMUSG00000023106	Denr	1500003K04Rik	density-regulated protein	protein-coding	-0.856573398452917	-0.845326538716436	-0.850419824236107	-0.852736118784894	-0.473986530886472	-0.344689557878814	-0.849757022020733	-0.852331722485919	3.07321281652207	0.302799192379468	1
Merged-chr1-154008787-4	chr1	154008694	154008894	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	108865.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-29247298-4	chr6	29247207	29247407	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25181.0	NM_001190461	69573.0	Mm.45161	NM_023516	ENSMUSG00000043421	Hilpda	2310016C08Rik|AW049004|Hig2	hypoxia inducible lipid droplet associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-126397658-2	chr2	126397558	126397758	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001080944, exon 13 of 28)	exon (NM_001080944, exon 13 of 28)	93895.0	NM_001080944	241633.0	Mm.222235	NM_001080944	ENSMUSG00000060131	Atp8b4	Im	ATPase, class I, type 8B, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-107998200-3	chr3	107998077	107998277	+	669.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Rod|LINE|L1	-11757.0	NM_008183	14863.0	Mm.440086	NM_008183	ENSMUSG00000040562	Gstm2	Gstb-2|Gstb2	glutathione S-transferase, mu 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-100119346-2	chr12	100119246	100119446	+	700.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008947, intron 7 of 9)	intron (NM_008947, intron 7 of 9)	7015.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-3893596-4	chr13	3893501	3893701	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001047159)	promoter-TSS (NM_001047159)	-20.0	NM_001047159	56349.0	Mm.22261	NM_019671	ENSMUSG00000021215	Net1	Net1a|mNET1	neuroepithelial cell transforming gene 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-57799056-2	chr10	57798956	57799156	+	643.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_020561, intron 1 of 7)	intron (NM_020561, intron 1 of 7)	4512.0	NM_020561	57319.0	Mm.2379	NM_020561	ENSMUSG00000019872	Smpdl3a	0610010C24Rik|AI529588|ASM3A|ASML3|ASML3A	sphingomyelin phosphodiesterase, acid-like 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-64949464-4	chr8	64949332	64949532	+	874.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163747, intron 1 of 4)	ID_B1|SINE|B4	2247.0	NM_028427	73067.0	Mm.294445	NM_028427	ENSMUSG00000025521	Tmem192	3110005G23Rik	transmembrane protein 192	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-73331063-4	chr13	73330970	73331170	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053163)	promoter-TSS (NM_053163)	61.0	NM_053163	94066.0	Mm.26775	NM_053163	ENSMUSG00000021607	Mrpl36	AI646041	mitochondrial ribosomal protein L36	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-100202505-2	chr12	100202405	100202605	+	752.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001313934, intron 2 of 5)	intron (NM_001313934, intron 2 of 5)	2361.0	NM_001313934	12313.0	Mm.285993	NM_009790	ENSMUSG00000001175	Calm1	AI256814|AI327027|AI461935|AL024000|CaM|Calm|Cam1	calmodulin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-107512094-4	chr11	107511985	107512185	+	827.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	32557.0	NM_025894	66997.0	Mm.491171	NM_025894	ENSMUSG00000020720	Psmd12	1500002F15Rik|AI480719|P55	proteasome (prosome, macropain) 26S subunit, non-ATPase, 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-88107818-3	chr17	88107697	88107897	+	950.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-17715.0	NM_001190356	225058.0	Mm.312053	NM_001190356		Gm4832	EG225058	predicted gene 4832	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-57611901-1	chr14	57611801	57612001	+	859.0	f0_c57.idr	intron (NM_020506, intron 9 of 22)	intron (NM_020506, intron 9 of 22)	40287.0	NR_152103	67518.0	Mm.376343	NR_152103	ENSMUSG00000097933	1700039M10Rik	-	RIKEN cDNA 1700039M10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-25717274-2	chr15	25717174	25717374	+	890.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_019472, intron 4 of 40)	intron (NM_019472, intron 4 of 40)	-35932.0	NM_001353142	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-51422225-4	chr3	51422128	51422328	+	915.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053089, intron 1 of 19)	MTD|LTR|ERVL-MaLR	6212.0	NM_053089	74838.0	Mm.275281	NM_053089	ENSMUSG00000063273	Naa15	5730450D16Rik|6330400I15|ASTBDN|Narg1|Tbdn-1|mNAT1	N(alpha)-acetyltransferase 15, NatA auxiliary subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-114006311-1	chr5	114006211	114006411	+	571.0	f0_balb.idr	intron (NM_001286396, intron 1 of 10)	intron (NM_001286396, intron 1 of 10)	1503.0	NM_001286396	13142.0	Mm.20115	NM_010018	ENSMUSG00000042096	Dao	AI987963|DAAO|DAMOX|Dao-1|Dao1	D-amino acid oxidase	protein-coding	-1.13146769101922	-1.10460487238646	-1.11735372523027	-1.12713099301154	-1.13082009585647	-0.300663969208598	-1.11446766439333	-1.12595147812057	3.06518455575839	0.353555291099784	1
Merged-chr1-171632713-3	chr1	171632617	171632817	+	797.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_144539, exon 8 of 8)	3' UTR (NM_144539, exon 8 of 8)	9183.0	NR_106151	102465784.0		NR_106151	ENSMUSG00000098316	Mir7683	Gm27950|mmu-mir-7683	microRNA 7683	ncRNA	1.75733394470952	0.953821241520837	1.37404065901545	0.914507875728752	1.95503367168398	0.958651130870461	2.45619318812025	1.76628700021242	1.78082572877014	0.163364894747353	0.62621469877915
Merged-chr6-25690110-2	chr6	25690010	25690210	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010338)	promoter-TSS (NM_010338)	-130.0	NM_010338	14763.0	Mm.409670	NM_010338	ENSMUSG00000039904	Gpr37	AI848630|Pael-R	G protein-coupled receptor 37	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-101765246-2	chr13	101765146	101765346	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077495, intron 1 of 15)	intron (NM_001077495, intron 1 of 15)	2971.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118813843-2	chr9	118813743	118813943	+	804.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 4 of 13)	intron (NM_001113514, intron 4 of 13)	102151.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-55231959-1	chr13	55231859	55232059	+	789.0	f0_balb.idr	intron (NM_008739, intron 2 of 22)	intron (NM_008739, intron 2 of 22)	22177.0	NM_008739	18193.0	Mm.168965	NM_008739	ENSMUSG00000021488	Nsd1	AI528500|KMT3B	nuclear receptor-binding SET-domain protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-32913248-4	chr13	32913165	32913365	+	986.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15125.0	NM_173051	380839.0	Mm.250802	NM_173051	ENSMUSG00000079049	Serpinb1c	EIC|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 1c	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-20900836-2	chr9	20900736	20900936	+	581.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-2246.0	NM_016876	53356.0	Mm.427309	NM_016876	ENSMUSG00000070319	Eif3g	44kDa|D0Jmb4|Eif3s4|TU-189B2|eIF3-p44|p44	eukaryotic translation initiation factor 3, subunit G	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-121718387-4	chr9	121718300	121718500	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010918)	promoter-TSS (NM_010918)	-781.0	NM_010918	18087.0	Mm.32842	NM_010918	ENSMUSG00000032525	Nktr	5330401F18Rik|D9Wsu172e	natural killer tumor recognition sequence	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97801767-4	chr11	97801654	97801854	+	872.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010688, intron 1 of 6)	intron (NM_010688, intron 1 of 6)	2189.0	NM_010688	16796.0	Mm.271967	NM_010688	ENSMUSG00000038366	Lasp1	AA408629|Def-4|LASP-1|MLN 50|SH3P6|Tg(Col1a1-lacZ)1Ngma	LIM and SH3 protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-62343136-4	chr9	62342987	62343187	+	983.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009672, intron 1 of 6)	CpG	1744.0	NM_009672	11737.0	Mm.269088	NM_009672	ENSMUSG00000032249	Anp32a	Anp32|I1PP2A|LANP|PHAP1|W91701|pp32	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-135657116-2	chr7	135657016	135657216	+	813.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001316681, intron 3 of 17)	intron (NM_001316681, intron 3 of 17)	-4802.0	NR_015548	67765.0	Mm.445272	NR_015548	ENSMUSG00000097471	5830432E09Rik	-	RIKEN cDNA 5830432E09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-52712484-1	chr17	52712384	52712584	+	764.5	f0_balb.idr	intron (NM_001031811, intron 1 of 15)	intron (NM_001031811, intron 1 of 15)	109775.0	NM_001031811	211468.0	Mm.399068	NM_001031811	ENSMUSG00000035580	Kcnh8	C130090D05Rik|ELK|ELK1|ELK3|Kv12.1	potassium voltage-gated channel, subfamily H (eag-related), member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-120847967-3	chr10	120847883	120848083	+	796.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177092, intron 4 of 6)	intron (NM_177092, intron 4 of 6)	-9646.0	NR_038023	100504616.0	Mm.451174	NR_038023	ENSMUSG00000087480	Gm15910	-	predicted gene 15910	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67493720-2	chr10	67493620	67493820	+	770.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44149.0	NM_010118	13654.0	Mm.290421	NM_010118	ENSMUSG00000037868	Egr2	Egr-2|Krox-20|Krox20|NGF1-B|Zfp-25|Zfp-6	early growth response 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-102924714-4	chr2	102924612	102924812	+	934.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23047.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	1.15058855671237	1.297872533433	0.833874144125893	1.21439111400932	1.30113445737589	1.30816541875661	2.35253780301374	1.22092165254197	1.83098568220297	0.139376639159162	0.583068659913399
Merged-chr7-113505260-4	chr7	113505153	113505353	+	840.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8581.0	NM_001285831	67420.0	Mm.206919	NM_026143	ENSMUSG00000030759	Far1	2600011M19Rik|2900034E22Rik|3732409C05Rik|AI850429|Mlstd2	fatty acyl CoA reductase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-62284098-2	chr4	62283998	62284198	+	768.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2331.0	NM_025286	20530.0	Mm.292539	NM_025286	ENSMUSG00000066152	Slc31a2	AI604396|CTR2	solute carrier family 31, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167417809-3	chr2	167417708	167417908	+	908.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3902.0	NM_148929	77031.0	Mm.278924	NM_148929	ENSMUSG00000039463	Slc9a8	1200006P13Rik|6430709P13Rik|AI182282|NHE-8|NHE8	solute carrier family 9 (sodium/hydrogen exchanger), member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-15029176-3	chr2	15029084	15029284	+	850.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001165941, intron 8 of 11)	RLTR44B|LTR|ERVK	20128.0	NM_001165942	74455.0	Mm.478923	NM_028950	ENSMUSG00000026707	Nsun6	4933403D21Rik|4933414E04Rik|NOPD1	NOL1/NOP2/Sun domain family member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-121938866-4	chr14	121938732	121938932	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026861, intron 4 of 8)	intron (NM_026861, intron 4 of 8)	-23058.0	NM_182806	110168.0	Mm.37405	NM_182806	ENSMUSG00000050350	Gpr18	-	G protein-coupled receptor 18	protein-coding	5.39493147114114	5.07637797579001	5.672575510182	4.03126223469787	5.6753835146171	5.79340176052777	5.65990730478083	4.48589903065936	0.371390115584148	0.332778799389001	0.833345452772687
Merged-chr9-111290032-4	chr9	111289947	111290147	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18202.0	NM_175266	77781.0	Mm.209005	NM_175266	ENSMUSG00000046785	Epm2aip1	A930003G21Rik|mKIAA0766	EPM2A (laforin) interacting protein 1	protein-coding	5.20434211562273	4.63013009059984	3.82407878189518	4.72335900280144	4.93568306628272	4.30134521592284	3.57117509812671	5.14755126009069	-0.0763595686524423	0.86501979472777	0.998431161219273
Merged-chr7-66333685-2	chr7	66333585	66333785	+	843.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146191, intron 3 of 33)	intron (NM_146191, intron 3 of 33)	48039.0	NR_106024	102465640.0		NR_106024	ENSMUSG00000098353	Mir7057	Gm27550|mmu-mir-7057	microRNA 7057	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-52422882-1	chr12	52422782	52422982	+	575.0	f0_balb.idr	Intergenic	Intergenic	57727.0	NR_136881	102638611.0	Mm.363799	NR_136881	ENSMUSG00000111982	Gm35135	-	predicted gene, 35135	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-20895880-2	chr18	20895782	20895982	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_177038, intron 1 of 28)	CpG	196.0	NM_029491	75964.0	Mm.273769	NM_029491	ENSMUSG00000033382	Trappc8	5033403J15Rik|AI845423|D030074E01Rik|Trs85|mKIAA1012	trafficking protein particle complex 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35165465-1	chr17	35165365	35165565	+	1000.0	f0_c57.idr	promoter-TSS (NM_020027)	promoter-TSS (NM_020027)	-588.0	NM_020027	53761.0	Mm.272462	NM_020027	ENSMUSG00000024393	Prrc2a	3110039B05Rik|Bat-2|Bat2|D17H6S51E|G2|Wbp12|mKIAA4178	proline-rich coiled-coil 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-100163310-4	chr6	100163218	100163418	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	124040.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-8576574-2	chr11	8576470	8576670	+	771.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 4 of 30)	intron (NM_001083587, intron 4 of 30)	87965.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0.693061296325068	0.448881439960158	0.441522341356299	0.4358384449099	0.998562669484594	0.809311895235266	1.01943597840503	0.866643938204722	2.89323095562958	0.100598787403412	1
Merged-chr5-117355985-3	chr5	117355908	117356108	+	664.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1297.0	NM_021539	59043.0	Mm.28489	NM_021539	ENSMUSG00000029364	Wsb2	AA673511|Swip2|WSB-2	WD repeat and SOCS box-containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4625829-4	chr16	4625747	4625947	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025571)	promoter-TSS (NM_025571)	-901.0	NM_025571	66449.0	Mm.354760	NM_025571	ENSMUSG00000014301	Pam16	2010110I09Rik|AV006767|CGI-136|Magmas|Tim16|Timm16	presequence translocase-asssociated motor 16 homolog (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-25302003-4	chr15	25301913	25302113	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	111751.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-94505489-2	chr6	94505389	94505589	+	592.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026255, intron 1 of 9)	Lx9|LINE|L1	5175.0	NM_026255	67582.0	Mm.280725	NM_026255	ENSMUSG00000045100	Slc25a26	4930433D19Rik|4933433F13Rik|AW557176|D6Bwg0781e|Slc25a6	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-109455323-4	chr8	109455227	109455427	+	956.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38700.0	NM_019938	56523.0	Mm.42166	NM_019938	ENSMUSG00000031727	Pmfbp1	1700016D22Rik|F77|Stap	polyamine modulated factor 1 binding protein 1	protein-coding	2.95135849749281	3.00669161955438	2.90121467955467	2.41592479342092	3.27887144360405	1.97280662536654	4.22251154266835	3.37223961750251	0.997282370815379	0.155440676204292	0.610928767307068
Merged-chr2-174442655-2	chr2	174442555	174442755	+	696.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3616.0	NM_022325	64138.0	Mm.156919	NM_022325	ENSMUSG00000016256	Ctsz	AI787083|AU019819|CTSX|D2Wsu143e	cathepsin Z	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4772363-2	chr16	4772263	4772463	+	599.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358082, intron 1 of 5)	intron (NM_001358082, intron 1 of 5)	15417.0	NM_001357050	15369.0	Mm.272866	NM_010443	ENSMUSG00000004070	Hmox2	HO-2|HO2	heme oxygenase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-35681881-4	chr15	35681760	35681960	+	856.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177151, intron 33 of 61)	intron (NM_177151, intron 33 of 61)	-20813.0	NR_030606	100124469.0		NR_030606	ENSMUSG00000077890	Mir875	Mirn875|mir-875|mmu-mir-875	microRNA 875	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-67858449-2	chr14	67858341	67858541	+	734.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177780, intron 4 of 51)	intron (NM_177780, intron 4 of 51)	1304.0	NR_105857	102465310.0		NR_105857	ENSMUSG00000098866	Mir6539	Gm27464|mir-6539|mmu-mir-6539	microRNA 6539	ncRNA	0.761825029793254	0.218846658616374	0.539326796884429	0.926576449435319	0.474087006004929	0.220278939934069	0.213890898483689	0.208433810983211	-2.64525243092663	0.187340982117153	1
Merged-chr1-171101410-2	chr1	171101336	171101536	+	714.5	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-20225.0	NM_001081275	75472.0	Mm.32760	NM_029301	ENSMUSG00000026649	Cfap126	1700009P17Rik|AV282292|Flattop|Fltp	cilia and flagella associated protein 126	protein-coding	2.15126892108449	2.27522462087881	2.19846718840413	1.98763416205854	2.84867012715898	3.18708639072654	2.21570907154852	1.82466707867496	1.05210754184124	0.210094546125116	0.69949048545273
Merged-chr18-38946590-4	chr18	38946487	38946687	+	740.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033789, intron 4 of 4)	L1M4|LINE|L1	-27888.0	NM_010197	14164.0	Mm.241282	NM_010197	ENSMUSG00000036585	Fgf1	Dffrx|Fam|Fgf-1|Fgfa	fibroblast growth factor 1	protein-coding	1.79053766326574	1.88608518338287	1.53599464374941	1.12218357812193	2.14504327828419	1.75790836356014	1.95660367591085	1.65263556677366	0.852713889578642	0.425461128020356	0.901356553382266
Merged-chr11-8569869-4	chr11	8569752	8569952	+	981.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 4 of 30)	intron (NM_001083587, intron 4 of 30)	94683.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-43930296-4	chr16	43930179	43930379	+	834.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027801, intron 6 of 15)	intron (NM_027801, intron 6 of 15)	40377.0	NM_027801	212153.0	Mm.209835	NM_027801	ENSMUSG00000022701	Ccdc191	2610015P09Rik|8430422M09Rik|AU040712	coiled-coil domain containing 191	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-75744265-1	chr3	75744165	75744365	+	842.0	f0_balb.idr	Intergenic	Lx7|LINE|L1	-88534.0	NR_040539	69193.0	Mm.374088	NR_040539	ENSMUSG00000099370	Platr10	2410007B07Rik	pluripotency associated transcript 10	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-88694450-4	chr8	88694310	88694510	+	978.408325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2618.0	NM_001128170	74256.0	Mm.490395	NM_173369	ENSMUSG00000036712	Cyld	2010013M14Rik|2900009M21Rik|C130039D01Rik|CDMT|CYLD1|EAC|mKIAA0849	CYLD lysine 63 deubiquitinase	protein-coding	0.706270445648527	0.250050101356733	0.24348263595412	0.871481404294657	0.887862601156548	0.251528914752019	0.244932168957977	0.407322003953889	-0.412667954274188	0.83246362339449	1
Merged-chr7-19094965-1	chr7	19094865	19095065	+	1000.0	f0_c57.idr	exon (NM_011383, exon 1 of 3)	exon (NM_011383, exon 1 of 3)	421.0	NM_011383	20475.0	Mm.3410	NM_011383	ENSMUSG00000040841	Six5	Dmahp|MDMAHP|TrexBF	sine oculis-related homeobox 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-52984096-2	chr2	52983996	52984196	+	579.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	126228.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34903166-2	chr17	34903066	34903266	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286575, intron 5 of 27)	intron (NM_001286575, intron 5 of 27)	4192.0	NM_145830	110147.0	Mm.35345	NM_145830	ENSMUSG00000013787	Ehmt2	Bat8|D17Ertd710e|G9a|KMT1C|NG36	euchromatic histone lysine N-methyltransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-139370216-2	chr2	139370116	139370316	+	594.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR65|LTR|ERV1	-123697.0	NM_001356507	228677.0	Mm.100450	NM_175467	ENSMUSG00000039092	Sptlc3	C130053K05Rik	serine palmitoyltransferase, long chain base subunit 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26639989-3	chr17	26639898	26640098	+	932.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026170, intron 8 of 9)	intron (NM_026170, intron 8 of 9)	-36398.0	NM_025272	11974.0	Mm.22602	NM_025272	ENSMUSG00000015575	Atp6v0e	Atp6k|Atp6v0e1|M9.2	ATPase, H+ transporting, lysosomal V0 subunit E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-90263006-2	chr3	90262906	90263106	+	655.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_151631, intron 12 of 13)	intron (NR_151631, intron 12 of 13)	-2229.0	NM_001356483	229541.0	Mm.30571	NM_201407	ENSMUSG00000042404	Dennd4b	-	DENN/MADD domain containing 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78569674-2	chr15	78569574	78569774	+	660.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_009008, intron 2 of 6)	intron (NM_009008, intron 2 of 6)	3109.0	NM_009008	19354.0	Mm.1972	NM_009008	ENSMUSG00000033220	Rac2	AI323801|AI452260	Rac family small GTPase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141269273-4	chr4	141269166	141269366	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-9173.0	NR_151527	100503810.0		NR_151527	ENSMUSG00000085395	Gm13056	-	predicted gene 13056	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85602046-3	chr12	85601921	85602121	+	860.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205053, intron 1 of 3)	intron (NM_001205053, intron 1 of 3)	2003.0	NM_001205053	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-43965794-4	chr19	43965675	43965875	+	992.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030703, intron 6 of 8)	intron (NM_030703, intron 6 of 8)	20745.0	NM_030703	93721.0	Mm.206774	NM_030703	ENSMUSG00000025196	Cpn1	0610011F20Rik|CPN	carboxypeptidase N, polypeptide 1	protein-coding	3.61106150797	1.740309221347	4.21104716268345	3.39488912858233	2.65487752458803	3.14044685599531	4.24102918512238	3.41265864839619	-0.00986046002999828	0.988844727957367	0.998431161219273
Merged-chr1-92676447-4	chr1	92676364	92676564	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27623.0	NM_153114	260301.0	Mm.219545	NM_153114	ENSMUSG00000044055	Otos	OTOSP	otospiralin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-29243257-3	chr6	29243193	29243393	+	873.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26929.0	NM_001302934	23917.0	Mm.260707	NM_011829	ENSMUSG00000003500	Impdh1	B930086D20Rik|IMPDH-I	inosine monophosphate dehydrogenase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-20941402-4	chr5	20941274	20941474	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080977, intron 1 of 7)	ORR1D2|LTR|ERVL-MaLR	-9615.0	NR_030699	320770.0	Mm.491217	NR_030699	ENSMUSG00000101013	A630072M18Rik	Aptr	RIKEN cDNA A630072M18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-49079066-3	chr7	49078944	49079144	+	761.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111016, intron 2 of 38)	intron (NM_001111016, intron 2 of 38)	83114.0	NR_154465	108167511.0	Mm.400599	NR_154465		9130015G15Rik	-	RIKEN cDNA 9130015G15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171279417-2	chr1	171279349	171279549	+	744.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_008911, exon 6 of 13)	exon (NM_008911, exon 6 of 13)	1737.0	NM_008911	19044.0	Mm.266888	NM_008911	ENSMUSG00000062729	Ppox	Ppo	protoporphyrinogen oxidase	protein-coding	2.27854111073688	2.32559533230049	1.98106404373186	2.39729996571933	2.09915559194137	2.34223506496944	1.63266854706491	2.50035499494477	-0.165427177189343	0.849328232883733	0.998431161219273
Merged-chr15-39112820-4	chr15	39112728	39112928	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172402)	promoter-TSS (NM_172402)	-46.0	NM_198606	223499.0	Mm.321937	NM_198606	ENSMUSG00000022300	Dcaf13	Gm83|Wdsof1	DDB1 and CUL4 associated factor 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30693029-2	chr2	30692929	30693129	+	796.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15018.0	NR_136917	665635.0	Mm.450149	NR_136917		Gm14486	-	predicted gene 14486	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-72536289-4	chr12	72536187	72536387	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026327)	promoter-TSS (NM_026327)	-70.0	NM_026327	67708.0	Mm.11233	NM_026327	ENSMUSG00000034501	Pcnx4	1810048J11Rik|4932413O10|AU017192|Pcnxl4	pecanex homolog 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91971019-4	chr2	91970891	91971091	+	821.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7428.0	NM_138306	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	0.547193052290333	0.689447075102204	0.157015261226079	0.151449219038152	0.302700230253653	1.04520568285836	0.158601142519651	0.152423702438658	0.437590036376336	0.824080240587914	1
Merged-chr9-95693849-4	chr9	95693732	95693932	+	820.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029620, intron 7 of 8)	intron (NM_029620, intron 7 of 8)	56204.0	NM_029620	76477.0	Mm.46016	NM_029620	ENSMUSG00000015354	Pcolce2	2400001O18Rik|Pcpe2	procollagen C-endopeptidase enhancer 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-23854020-3	chr10	23853879	23854079	+	714.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011979, intron 2 of 6)	intron (NM_011979, intron 2 of 6)	2517.0	NM_011979	26464.0	Mm.27334	NM_011979	ENSMUSG00000020010	Vnn3	-	vanin 3	protein-coding	0.305625102500896	1.54138448375897	1.37251983652329	0.322014509181553	0.308097645929753	0.346564422827058	0.334354913434513	0.873374920183701	-2.50613334237877	0.184618349947323	0.660208916853765
Merged-chr17-26706040-2	chr17	26705940	26706140	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9610.0	NM_029870	77128.0	Mm.275414	NM_029870	ENSMUSG00000048249	Crebrf	A930001N09Rik|LRF	CREB3 regulatory factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-118807958-1	chr14	118807858	118808058	+	541.0	f1_balb.idr	intron (NM_001160097, intron 1 of 3)	intron (NM_001160097, intron 1 of 3)	20087.0	NM_001160097	58187.0	Mm.390755	NM_021386	ENSMUSG00000022132	Cldn10	6720456I16Rik|Cldn10a|Cldn10b|D14Ertd728e	claudin 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-139231508-2	chr4	139231408	139231608	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	37397.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-58693205-2	chr3	58693105	58693305	+	785.900024	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009174)	promoter-TSS (NM_009174)	616.0	NR_045167	71301.0	Mm.254475	NR_045167	ENSMUSG00000097725	4930593A02Rik	4933440I01Rik	RIKEN cDNA 4930593A02 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-82045343-3	chr6	82045244	82045444	+	973.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145570, intron 1 of 2)	intron (NM_145570, intron 1 of 2)	3716.0	NM_145570	232146.0	Mm.489683	NM_145570	ENSMUSG00000035104	Eva1a	BC014699|Fam176a|Tmem166	eva-1 homolog A (C. elegans)	protein-coding	3.49715337351645	2.18947101844571	4.11291468925964	3.45051002633615	4.25365667889624	4.15560029358537	3.82222017928984	4.40569641676127	0.981734519696826	0.0672410840993663	0.38934989641432
Merged-chr19-4943159-4	chr19	4943111	4943311	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172835)	promoter-TSS (NM_172835)	-84.0	NM_001347422	240518.0	Mm.277580	NM_172835	ENSMUSG00000024901	Peli3	6030441F14Rik|A930011L17|BC028931	pellino 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-82647379-4	chr10	82647263	82647463	+	948.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011561, exon 8 of 10)	exon (NM_011561, exon 8 of 10)	17521.0	NR_037190	624784.0	Mm.284252	NR_037190		Gm9855	-	thymine DNA glycosylase pseudogene	pseudo	3.78163368126771	3.5121946905642	3.19737864668522	3.10481287425031	3.86066521939679	2.95486020388583	3.42108199754646	4.22356833618525	0.421388140604406	0.450145673661721	0.916433448969457
Merged-chr3-146121790-1	chr3	146121690	146121890	+	712.0	f0_balb.idr	promoter-TSS (NM_134160)	promoter-TSS (NM_134160)	-1.0	NM_134160	171166.0	Mm.114683	NM_134160	ENSMUSG00000036853	Mcoln3	6720490O21Rik|TRPML3|Va	mucolipin 3	protein-coding	-0.638381199328103	-0.764365559429191	-0.767183422065532	-0.769347170139276	-0.317323592966262	-0.76372830942625	-0.766563212656347	-0.477510554532251	2.13865286545355	0.443874764403295	1
Merged-chr15-100304198-4	chr15	100304082	100304282	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027334)	promoter-TSS (NM_027334)	-635.0	NM_027334	70152.0	Mm.488086	NM_027334	ENSMUSG00000054619	Mettl7a1	2210414H16Rik|3300001H21Rik|Aam-B|Mettl7a|UbiE1	methyltransferase like 7A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-78049531-4	chr2	78049456	78049656	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1621.0	NR_108098	78158.0	Mm.78473	NR_108098	ENSMUSG00000085431	4930440I19Rik	-	RIKEN cDNA 4930440I19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-105983933-2	chr1	105983833	105984033	+	897.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_151625, intron 2 of 2)	RLTR20A3_MM|LTR|ERVK	6349.0	NR_151625	635504.0	Mm.359717	NR_151625		Gm7160	EG635504	predicted gene 7160	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5688363-3	chr17	5688262	5688462	+	711.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 3 of 8)	(CA)n|Simple_repeat|Simple_repeat	-110295.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153200190-2	chr2	153200090	153200290	+	864.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133847, intron 13 of 17)	intron (NM_133847, intron 13 of 17)	25251.0	NM_198617	241732.0	Mm.277243	NM_198617	ENSMUSG00000074671	Tspyl3	AW212607|Gm36	TSPY-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-115494578-4	chr8	115494463	115494663	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	212331.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-107577641-4	chr4	107577532	107577732	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_147221, intron 4 of 10)	intron (NM_147221, intron 4 of 10)	105957.0	NR_151717	56296.0	Mm.141324	NM_019872	ENSMUSG00000028610	Dmrtb1	Dmrt6|Prp13	DMRT-like family B with proline-rich C-terminal, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-23712423-9	chr5	23712225	23712425	+	872.6611330000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015554, intron 1 of 4)	CpG	342.0	NR_038090	433855.0	Mm.205125	NR_015554	ENSMUSG00000105987	AI506816	-	expressed sequence AI506816	ncRNA	2.8151901002959	3.06359793450936	1.57877726891938	2.52266700606321	3.55704225927362	2.85180049740222	3.67237881844734	3.07630663468553	1.28186763291725	0.0723582960734661	0.405553489390897
Merged-chr2-154376412-2	chr2	154376312	154376512	+	690.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_009228)	TTS (NM_009228)	-3693.0	NM_025876	66971.0	Mm.289427	NM_025876	ENSMUSG00000027487	Cdk5rap1	2310066P17Rik	CDK5 regulatory subunit associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-9982695-5	chr19	9982691	9982891	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_073181, exon 2 of 5)	non-coding (NR_073181, exon 2 of 5)	145.0	NM_010239	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-7057747-3	chr10	7057651	7057851	+	648.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34566.0	NM_001033391	320495.0	Mm.331674	NM_001033391	ENSMUSG00000064065	Ipcef1	A130090K04Rik	interaction protein for cytohesin exchange factors 1	protein-coding	1.3895704030108	1.26950807447359	1.99567630644968	2.27433817308998	2.67279047196704	2.08098962964851	2.14077696352903	2.07398624820926	1.19266610362467	0.230252431697613	0.72394357324632
Merged-chr8-111393827-4	chr8	111393707	111393907	+	829.8690190000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178086)	promoter-TSS (NM_178086)	14.0	NM_178086	338521.0	Mm.41083	NM_178086	ENSMUSG00000033579	Fa2h	FAAH|Faxdc1|G630055L08Rik	fatty acid 2-hydroxylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-32537021-2	chr17	32536921	32537121	+	686.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_024442, exon 2 of 13)	exon (NM_024442, exon 2 of 13)	464.0	NM_001356303	70101.0	Mm.30504	NM_024442	ENSMUSG00000048440	Cyp4f16	2310021J05Rik|AI746515	cytochrome P450, family 4, subfamily f, polypeptide 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-42004601-3	chr19	42004484	42004684	+	809.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145500, intron 1 of 2)	MTC|LTR|ERVL-MaLR	22821.0	NM_145500	226122.0	Mm.22948	NM_145500	ENSMUSG00000025171	Ubtd1	BC016129	ubiquitin domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-99576109-4	chr12	99576022	99576222	+	995.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_136760, intron 2 of 3)	intron (NR_136760, intron 2 of 3)	12281.0	NR_136760	102639404.0	Mm.396324	NR_136760	ENSMUSG00000097917	Gm26839	-	predicted gene, 26839	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-57520436-2	chr9	57520336	57520536	+	679.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007747)	promoter-TSS (NM_007747)	-796.0	NM_007747	12858.0	Mm.273403	NM_007747	ENSMUSG00000000088	Cox5a	AA959768|CcOX	cytochrome c oxidase subunit Va	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-99207513-2	chr6	99207413	99207613	+	766.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001197321, intron 2 of 17)	intron (NM_001197321, intron 2 of 17)	59002.0	NM_001197321	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100360411-4	chr11	100360314	100360514	+	972.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28|LTR|ERVL	-4273.0	NM_010404	15114.0	Mm.281700	NM_010404	ENSMUSG00000006930	Hap1	HAP-1	huntingtin-associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43056264-2	chr4	43056164	43056364	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-2689.0	NM_021468	22249.0	Mm.128892	NM_021468	ENSMUSG00000028456	Unc13b	Munc13-1|Munc13-2|Unc13a|Unc13h1|Unc13h2	unc-13 homolog B (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-80257110-2	chr15	80257010	80257210	+	863.0833130000001	f1_balb.idr|f1_c57bl6.idr	exon (NM_001287180, exon 4 of 4)	exon (NM_001287180, exon 4 of 4)	1926.0	NM_009716	11911.0	Mm.641	NM_009716	ENSMUSG00000042406	Atf4	Atf-4|C/ATF|CREB2|TAXREB67	activating transcription factor 4	protein-coding	0.756450670484061	1.04535530834386	0.166021228810512	0.160323457780422	0.673768523317371	0.175006077006763	0.167644137714765	0.161321204766888	-1.69339082545042	0.418062512311399	1
Merged-chr19-21913203-4	chr19	21913127	21913327	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	134887.0	NM_031997	83921.0	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	5.77516867764675	5.74120324711709	5.33161395429012	5.44022772439783	6.72506746206085	5.65959151817887	6.77492219709568	6.28306398533086	0.930679779885565	0.000627808985201948	0.0134990182875501
Merged-chr7-84591534-4	chr7	84591433	84591633	+	855.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010176, intron 11 of 13)	L1ME3A|LINE|L1	14409.0	NM_010176	14085.0	Mm.3798	NM_010176	ENSMUSG00000030630	Fah	swst	fumarylacetoacetate hydrolase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120371147-2	chr8	120371047	120371247	+	732.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-117719.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-55933899-3	chr16	55933821	55934021	+	862.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159366, intron 1 of 4)	CpG	927.0	NM_001159364	74201.0	Mm.178427	NM_028815	ENSMUSG00000022604	Cep97	2810403B08Rik|4932439K18Rik|AA437768|E130116N02Rik|Lrriq2	centrosomal protein 97	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-40947853-6	chr14	40947726	40947926	+	848.2222289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145928, intron 1 of 8)	intron (NM_145928, intron 1 of 8)	383.0	NM_001316748	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-25091566-2	chr12	25091452	25091652	+	652.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	4540.0	NM_010496	15902.0	Mm.34871	NM_010496	ENSMUSG00000020644	Id2	AI255428|C78922|Idb2|bHLHb26	inhibitor of DNA binding 2	protein-coding	2.51466240959418	2.06136055569659	0.945450785377055	0.925744949550446	1.30220686432176	1.81645750565363	2.10643549862011	0.929235033938273	-0.51544459765395	0.691064502673647	0.996768576110068
Merged-chr1-180726895-2	chr1	180726795	180726995	+	638.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133225, intron 1 of 7)	intron (NM_133225, intron 1 of 7)	852.0	NM_133225	170760.0	Mm.272981	NM_133225	ENSMUSG00000026499	Acbd3	60kDa|8430407O11Rik|D1Ertd10e|GCP60|GOLPH1|Gocap1|Pap7	acyl-Coenzyme A binding domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-110281318-4	chr9	110281218	110281418	+	875.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_105744)	promoter-TSS (NR_105744)	31.0	NR_105744	102465959.0		NR_105744	ENSMUSG00000098973	Mir6236	Gm27547|mmu-mir-6236	microRNA 6236	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4942494-2	chr19	4942394	4942594	+	750.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347422, intron 1 of 5)	intron (NM_001347422, intron 1 of 5)	598.0	NM_172835	240518.0	Mm.277580	NM_172835	ENSMUSG00000024901	Peli3	6030441F14Rik|A930011L17|BC028931	pellino 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-63047264-3	chr11	63047192	63047392	+	916.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-14367.0	NM_027660	71062.0	Mm.23534	NM_027660	ENSMUSG00000042189	Tekt3	4933407G07Rik	tektin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-115249873-2	chr10	115249730	115249930	+	994.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_025706, intron 1 of 16)	intron (NM_025706, intron 1 of 16)	1663.0	NM_025706	66687.0	Mm.22252	NM_025706	ENSMUSG00000020130	Tbc1d15	4432405K22Rik|AU022358|AU023730|AW557774|Ly6dl|Rab7-GAP	TBC1 domain family, member 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-114690344-4	chr5	114690236	114690436	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019821, intron 1 of 4)	intron (NM_019821, intron 1 of 4)	599.0	NM_019821	56356.0	Mm.275766	NM_019821	ENSMUSG00000011884	Gltp	1110001F24Rik|C76925|C77564	glycolipid transfer protein	protein-coding	3.52943458001681	3.38605711985855	3.53234501486569	3.70852042611209	3.04388250773899	3.5936020334951	3.39197402543086	3.19845091203741	-0.364036278578763	0.497143237108648	0.936897994490085
Merged-chr12-83549560-2	chr12	83549460	83549660	+	618.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359167, intron 12 of 12)	intron (NM_001359167, intron 12 of 12)	12900.0	NM_001359168	217695.0	Mm.59257	NM_183154	ENSMUSG00000042628	Zfyve1	DFCP1|G630053K23|TAFF1|ZNFN2A1|mKIAA1589	zinc finger, FYVE domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-70173463-3	chr10	70173344	70173544	+	719.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111121, intron 5 of 8)	intron (NM_001111121, intron 5 of 8)	-31220.0	NM_001304739	69563.0	Mm.64672	NM_001304739	ENSMUSG00000019933	Mrln	2310015B20Rik|Linc-RAM|Mln	myoregulin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-148875594-4	chr2	148875488	148875688	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009976)	promoter-TSS (NM_009976)	-76.0	NM_009976	13010.0	Mm.4263	NM_009976	ENSMUSG00000027447	Cst3	CysC	cystatin C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-106555508-2	chr8	106555408	106555608	+	729.833374	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007665, exon 16 of 16)	3' UTR (NM_007665, exon 16 of 16)	-31635.0	NR_045470	68692.0	Mm.416843	NR_045470	ENSMUSG00000099139	1110028F18Rik	-	RIKEN cDNA 1110028F18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97479036-4	chr6	97478964	97479164	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	8756.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	5.01501080152901	6.03937496208558	4.71490785750508	4.99420559962996	4.93128686063617	5.03811200803521	3.92572112618911	5.55674550231148	-0.358554132881039	0.373690992770512	0.86677623365007
Merged-chr12-112632043-2	chr12	112631943	112632143	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007421, intron 2 of 12)	intron (NM_007421, intron 2 of 12)	11996.0	NM_007421	11565.0	Mm.3440	NM_007421	ENSMUSG00000011148	Adssl1	AI528595|Adss|Adss1	adenylosuccinate synthetase like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-90292420-4	chr3	90292323	90292523	+	923.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22274.0	NR_105979	102465612.0		NR_105979	ENSMUSG00000099199	Mir7012	Gm27370|mmu-mir-7012	microRNA 7012	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-25355523-4	chr15	25355428	25355628	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58236.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-75836624-2	chr10	75836524	75836724	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur2|SINE|Alu	-1743.0	NM_010361	14872.0	Mm.24118	NM_010361	ENSMUSG00000033318	Gstt2	AI266894|Yrs|mGSTT2	glutathione S-transferase, theta 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-52967122-4	chr2	52967021	52967221	+	983.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	109253.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-56054049-3	chr8	56053928	56054128	+	773.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080438, intron 4 of 9)	intron (NM_080438, intron 4 of 9)	113203.0	NM_080438	110304.0	Mm.307061	NM_080438	ENSMUSG00000038257	Glra3	-	glycine receptor, alpha 3 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-93014629-4	chr1	93014536	93014736	+	878.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001110315)	TTS (NM_001110315)	8302.0	NM_177587	208760.0	Mm.235537	NM_177587	ENSMUSG00000045091	Aqp12	AB084104|mAQP12	aquaporin 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-29048582-2	chr19	29048482	29048682	+	829.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021299)	promoter-TSS (NM_021299)	-680.0	NM_021299	56248.0	Mm.196067	NM_021299	ENSMUSG00000024782	Ak3	AA407498|AI506714|AK-3|Ak3l|Ak3l1|Akl3l	adenylate kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-91191506-3	chr10	91191404	91191604	+	653.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19885.0	NM_001080130	21917.0	Mm.159684	NM_011605	ENSMUSG00000019961	Tmpo	5630400D24Rik|AI195756|AI606875|AW214352|AW547477|LAP2|TP	thymopoietin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-9176860-2	chr13	9176760	9176960	+	628.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	82979.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-45691714-4	chr17	45691605	45691805	+	650.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026732, intron 1 of 2)	intron (NM_026732, intron 1 of 2)	5356.0	NM_026732	68463.0	Mm.379158	NM_026732	ENSMUSG00000023939	Mrpl14	1110006I11Rik|AI846816|MRP-L32|Rpml32	mitochondrial ribosomal protein L14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-102231964-2	chr15	102231864	102232064	+	860.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013566)	promoter-TSS (NM_013566)	-29.0	NM_013566	16421.0	Mm.58	NM_013566	ENSMUSG00000001281	Itgb7	Ly69	integrin beta 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-32832334-3	chr19	32832251	32832451	+	663.722229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	74774.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	0.559607592423408	1.68885128768018	0.58950501855377	1.24153893609177	0.562450058755001	1.60347800652994	0.592628873281189	1.11958942812228	-0.249475609058289	0.878696727553256	0.998431161219273
Merged-chr6-71537469-4	chr6	71537356	71537556	+	985.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28|LTR|ERVL	-6396.0	NM_001361405	66700.0	Mm.181278	NM_025783	ENSMUSG00000053119	Chmp3	25.1|4921505F14Rik|9130011K15Rik|CGI-49|D6Ertd286e|NEDF|Vps24	charged multivesicular body protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-87730829-4	chr6	87730763	87730963	+	888.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159697)	promoter-TSS (NM_001159697)	-6.0	NM_001159697	58229.0	Mm.333229	NM_021418	ENSMUSG00000068263	Efcc1	Ccdc48	EF hand and coiled-coil domain containing 1	protein-coding	1.87658001360941	1.26671979778751	1.49487350895764	2.33793935465418	3.11004637314853	1.78078358560573	2.52963190637746	2.12567891724939	1.58297383682543	0.105215447180907	0.505892575341078
Merged-chr11-106723043-2	chr11	106722932	106723132	+	582.0	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-7751.0	NM_001305157	18613.0	Mm.343951	NM_008816	ENSMUSG00000020717	Pecam1	C85791|Cd31|PECAM-1|Pecam	platelet/endothelial cell adhesion molecule 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-101515654-3	chr14	101515546	101515746	+	743.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081278, intron 1 of 18)	intron (NM_001081278, intron 1 of 18)	93545.0	NM_001081278	210789.0	Mm.320639	NM_173380	ENSMUSG00000033083	Tbc1d4	5930406J04Rik|A930035N22|AV295684|As160	TBC1 domain family, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-32224918-4	chr19	32224822	32225022	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 4 of 9)	Lx9|LINE|L1	-13909.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-140995266-2	chr4	140995166	140995366	+	721.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164366, intron 6 of 28)	intron (NM_001164366, intron 6 of 28)	8393.0	NM_001164366	74772.0	Mm.205625	NM_029097	ENSMUSG00000036622	Atp13a2	1110012E06Rik|AA589443	ATPase type 13A2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-3922202-2	chr11	3922102	3922302	+	667.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001130458, intron 7 of 9)	intron (NM_001130458, intron 7 of 9)	-7538.0	NM_153142	103710.0	Mm.171514	NM_153142	ENSMUSG00000048807	Slc35e4	A330108F03Rik|AI414849|AI536442	solute carrier family 35, member E4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-94328200-5	chr16	94328093	94328293	+	874.9833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133229)	promoter-TSS (NM_133229)	-229.0	NM_133229	170765.0	Mm.42604	NM_133229	ENSMUSG00000022941	Ripply3	Dscr6	ripply transcriptional repressor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-14783151-4	chr18	14783044	14783244	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001100449)	promoter-TSS (NM_001100449)	-101.0	NM_001100449	72504.0	Mm.312233	NM_001100449	ENSMUSG00000054321	Taf4b	105kDa|2610524B04Rik|4932409F03Rik|AW987595|TAFII-105|TAFII105|Taf2c2	TATA-box binding protein associated factor 4b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-82151192-4	chr12	82151090	82151290	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18826.0	NM_001167983	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-11513257-4	chr2	11513172	11513372	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177758, intron 1 of 14)	intron (NM_001177758, intron 1 of 14)	-11182.0	NM_001177757	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-17857463-4	chr5	17857378	17857578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159558, intron 1 of 15)	intron (NM_001159558, intron 1 of 15)	-7686.0	NM_001159556	12491.0	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 molecule	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-35512167-2	chr2	35512067	35512267	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-46291.0	NM_001114125	69601.0	Mm.29629	NM_001001602	ENSMUSG00000026883	Dab2ip	2310011D08Rik|AI480459|Aip1|mKIAA1743	disabled 2 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-20951541-4	chr1	20951406	20951606	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027974)	promoter-TSS (NM_027974)	-120.0	NM_027974	71877.0	Mm.29178	NM_027974	ENSMUSG00000041809	Efhc1	1700029F22Rik|mRib72-1|myoclonin1	EF-hand domain (C-terminal) containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-128406369-2	chr6	128406269	128406469	+	648.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162858, intron 2 of 5)	intron (NM_001162858, intron 2 of 5)	6603.0	NM_001162858	60345.0	Mm.269883	NM_021717	ENSMUSG00000001520	Nrip2	AW491344|NIX1	nuclear receptor interacting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85270432-4	chr12	85270341	85270541	+	920.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304475, intron 1 of 11)	CpG	150.0	NM_001304475	217716.0	Mm.311981	NM_145446	ENSMUSG00000021245	Mlh3	AV125803|BB126472	mutL homolog 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-128244166-4	chr1	128243998	128244198	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026390)	promoter-TSS (NM_026390)	-39.0	NM_026390	67812.0	Mm.293321	NM_026390	ENSMUSG00000026353	Ubxn4	1300013G12Rik|Ubxd2|mKIAA0242	UBX domain protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10278001-3	chr19	10277896	10278096	+	857.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198114, intron 1 of 19)	intron (NM_198114, intron 1 of 19)	26881.0	NM_198114	269060.0	Mm.329718	NM_198114	ENSMUSG00000035735	Dagla	Nsddr	diacylglycerol lipase, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-65473346-4	chr1	65473252	65473452	+	981.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_A|LINE|L1	162095.0	NM_139270	213527.0	Mm.294225	NM_139270	ENSMUSG00000025946	Pth2r	Pthr2	parathyroid hormone 2 receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-99469438-2	chr10	99469338	99469538	+	634.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-139733.0	NR_038019	100504202.0	Mm.403801	NR_038019	ENSMUSG00000111962	Gm20110	-	predicted gene, 20110	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-43668120-4	chr10	43668026	43668226	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	74699.0	NR_033558	414125.0	Mm.244305	NR_033558	ENSMUSG00000075184	F830002L21Rik	F930017D23Rik	RIKEN cDNA F830002L21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-46909258-2	chr18	46909158	46909358	+	818.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12557.0	NM_001033446	381142.0	Mm.329423	NM_001033446	ENSMUSG00000073568	Arl14epl	Gm949	ADP-ribosylation factor-like 14 effector protein-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-79844171-4	chr3	79844027	79844227	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1465.0	NM_027495	70652.0	Mm.46635	NM_027495	ENSMUSG00000027956	Tmem144	1110057I03Rik|5730537D05Rik	transmembrane protein 144	protein-coding	1.82737669002493	1.72943000354927	2.19389948462559	2.03115068637285	1.72094206300242	2.04737093235426	1.98295077306147	2.04109377502857	-0.020606201823126	0.982393365291029	0.998431161219273
Merged-chr8-75213094-4	chr8	75213032	75213232	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029182)	promoter-TSS (NM_029182)	-812.0	NM_029182	75141.0	Mm.179267	NM_029182	ENSMUSG00000034472	Rasd2	4930526B11Rik|AU045414|Rhes|TEM-2|TEM2	RASD family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167485285-2	chr2	167485185	167485385	+	549.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_170756, exon 2 of 3)	exon (NM_170756, exon 2 of 3)	-7360.0	NM_030743	81018.0	Mm.22225	NM_030743	ENSMUSG00000006418	Rnf114	1110008J21Rik|AI225886|AW549494|Zfp228|Zfp313|Znf228	ring finger protein 114	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78268034-4	chr15	78267944	78268144	+	767.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16805.0	NR_106137	102465776.0		NR_106137	ENSMUSG00000098996	Mir7676-1	Gm27600|mmu-mir-7676-1	microRNA 7676-1	ncRNA	3.2813715462269	3.60090626550785	1.58852432429697	2.89410619355974	3.42615911564624	3.55434972259473	2.77376776160871	2.40737157264158	0.151401721449171	0.840740049102378	0.998431161219273
Merged-chr5-114934711-3	chr5	114934603	114934803	+	576.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359946, intron 3 of 4)	MTB_Mm|LTR|ERVL-MaLR	-7499.0	NM_028211	72357.0	Mm.292672	NM_028211	ENSMUSG00000029559	2210016L21Rik	-	RIKEN cDNA 2210016L21 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106416625-2	chr11	106416525	106416725	+	606.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023913, intron 10 of 21)	intron (NM_023913, intron 10 of 21)	-33844.0	NM_010494	15896.0	Mm.394	NM_010494	ENSMUSG00000001029	Icam2	CD102|Icam-2|Ly-60	intercellular adhesion molecule 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-120407024-4	chr14	120406913	120407113	+	995.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360376, intron 8 of 8)	intron (NM_001360376, intron 8 of 8)	-71448.0	NM_029519	76108.0	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-34766696-2	chr2	34766596	34766796	+	848.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-5394.0	NM_001163434	14828.0	Mm.330160	NM_022310	ENSMUSG00000026864	Hspa5	AL022860|AU019543|Bip|D2Wsu141e|D2Wsu17e|Grp78|Hsce70|SEZ-7|Sez7|baffled|mBiP	heat shock protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21511232-3	chr9	21511187	21511387	+	899.3333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-1053.0	NR_136911	17083.0	Mm.196618	NM_010744	ENSMUSG00000032180	Tmed1	Il1rl1l|Ly84l|St2l	transmembrane p24 trafficking protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-105047800-4	chr3	105047703	105047903	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030249, intron 1 of 5)	B4A|SINE|B4	5150.0	NM_001163332	80281.0	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-29766301-1	chr6	29766201	29766401	+	964.5	f1_balb.idr	Intergenic	B2_Mm1a|SINE|B2	-2142.0	NM_021414	74340.0	Mm.210899	NM_021414	ENSMUSG00000029772	Ahcyl2	4631427C17Rik|AI227036|Adohcyase3|mKIAA0828	S-adenosylhomocysteine hydrolase-like 2	protein-coding	-1.50874880059862	-1.47511716453926	-1.4852876488768	-1.49364198752927	-1.50638792193216	-0.992828729615453	-1.48298527415345	-1.4921465649048	2.3185461113984	0.50391666537493	1
Merged-chr18-56562436-4	chr18	56562335	56562535	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138600)	promoter-TSS (NM_138600)	-134.0	NM_001162989	56698.0	Mm.214569	NM_019996	ENSMUSG00000008301	Phax	2810055C14Rik|4933427L19Rik|AU018701|AU018854|D18Ertd65e|Rnuxa|p55	phosphorylated adaptor for RNA export	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-87850533-4	chr6	87850447	87850647	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355195, intron 1 of 4)	CpG	559.0	NM_001109745	12785.0	Mm.290251	NM_013493	ENSMUSG00000030057	Cnbp	AA408710|Cnbp1|Znf9	cellular nucleic acid binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-145308012-4	chr6	145307901	145308101	+	892.8250119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	57449.0	NR_045598	100039495.0	Mm.121014	NR_045598	ENSMUSG00000086013	Gm15706	-	predicted gene 15706	ncRNA	4.0146996754022	3.50103094638352	4.17237861765272	3.83259146707295	4.04549972781162	3.80291124127717	3.96786174944235	2.82703023818837	-0.23361205540663	0.645738046464846	0.984116759910594
Merged-chr7-64141026-4	chr7	64140909	64141109	+	971.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12826.0	NM_001039104	17364.0	Mm.38875	NM_018752	ENSMUSG00000030523	Trpm1	4732499L03Rik|AI606771|Ltrpc1|Mlsn1	transient receptor potential cation channel, subfamily M, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-109452175-1	chr3	109452075	109452275	+	894.3333130000001	f0_balb.idr	intron (NM_020505, intron 2 of 26)	intron (NM_020505, intron 2 of 26)	111492.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	-1.13146769101922	-1.10460487238646	-1.11735372523027	-1.12713099301154	-1.13082009585647	-0.300663969208598	-1.11446766439333	-1.12595147812057	3.06518455575839	0.353555291099784	1
Merged-chr1-14507444-2	chr1	14507344	14507544	+	914.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-197245.0	NM_010164	14048.0	Mm.250185	NM_010164	ENSMUSG00000025932	Eya1	bor	EYA transcriptional coactivator and phosphatase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76715341-4	chr15	76715238	76715438	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_145471)	TTS (NM_145471)	4697.0	NM_001358893	223664.0	Mm.277582	NM_145471	ENSMUSG00000033728	Lrrc14	E130306I01Rik|mKIAA0014	leucine rich repeat containing 14	protein-coding	5.83971903899445	5.07291329371562	4.22229338367737	6.03172488045136	4.7855972962684	4.77346862896566	5.14725154477231	5.71874858848093	-0.34847400487666	0.374812799417118	0.8677007912413
Merged-chr2-73053266-1	chr2	73053166	73053366	+	573.0	f0_balb.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-72820.0	NM_001018042	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26203543-4	chr17	26203438	26203638	+	907.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081069, intron 3 of 16)	CpG-6118	597.0	NM_001081069	50782.0	Mm.109840	NM_001081069	ENSMUSG00000024186	Rgs11	C78048	regulator of G-protein signaling 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-17048698-2	chr16	17048598	17048798	+	557.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21441.0	NM_023249	106369.0	Mm.237941	NM_023249	ENSMUSG00000022773	Ypel1	0610009L05Rik|1700016N17Rik|1700019O22Rik|4921520K19Rik|4930511F14Rik|AV118478|DGL-1|Dgl1|Ppil2|mdgl-1	yippee like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-27331761-2	chr7	27331661	27331861	+	805.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175641, intron 4 of 32)	intron (NM_175641, intron 4 of 32)	1887.0	NM_001113549	108075.0	Mm.272251	NM_175641	ENSMUSG00000040488	Ltbp4	2310046A13Rik	latent transforming growth factor beta binding protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-57767293-3	chr6	57767185	57767385	+	727.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146168, intron 3 of 4)	intron (NM_146168, intron 3 of 4)	57840.0	NM_146168	232023.0	Mm.24642	NM_146168	ENSMUSG00000037788	Vopp1	AW146242|Ecop	vesicular, overexpressed in cancer, prosurvival protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-155491735-4	chr4	155491631	155491831	+	950.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160017, intron 1 of 10)	CpG	370.0	NM_001160016	14688.0	Mm.2344	NM_008142	ENSMUSG00000029064	Gnb1	AA409223|C77571|Gnb-1	guanine nucleotide binding protein (G protein), beta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-30499212-3	chr6	30499107	30499307	+	841.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347087, intron 5 of 13)	intron (NM_001347087, intron 5 of 13)	10566.0	NM_001347087	72649.0	Mm.45418	NM_178625	ENSMUSG00000029782	Tmem209	2700094F01Rik|AI428435	transmembrane protein 209	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-172143775-4	chr1	172143674	172143874	+	897.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-4241.0	NR_151641	98193.0	Mm.159915	NM_153555	ENSMUSG00000026554	Dcaf8	AA408877|AA433120|AA792214|AU018973|C76055|D1Dau35e|D1Ucla4|H326|Wdr42a	DDB1 and CUL4 associated factor 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-13447808-3	chr16	13447676	13447876	+	651.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1747.0	NR_030549	100124432.0		NR_030549	ENSMUSG00000076972	Mir193b	Mir193|Mirn193b|mir-193b	microRNA 193b	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-192101540-3	chr1	192101442	192101642	+	907.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001290279, exon 10 of 10)	3' UTR (NM_001290279, exon 10 of 10)	-8943.0	NM_011633	22033.0	Mm.380491	NM_011633		Traf5	-	TNF receptor-associated factor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-70454244-2	chr12	70454144	70454344	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028339, intron 1 of 7)	intron (NM_028339, intron 1 of 7)	1090.0	NM_028339	72736.0	Mm.204670	NM_028339	ENSMUSG00000021072	Tmx1	2810425A04Rik|AI465319|Txndc1	thioredoxin-related transmembrane protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-73522782-2	chr7	73522682	73522882	+	776.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081345, intron 2 of 38)	intron (NM_001081345, intron 2 of 38)	18964.0	NM_001081345	244059.0	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124444401-2	chr5	124444301	124444501	+	725.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310725, intron 1 of 6)	ID4_|SINE|ID	-1098.0	NM_001310723	67956.0	Mm.137966	NM_030241	ENSMUSG00000049327	Kmt5a	2410195B05Rik|AA617402|AW536475|PR-SET7|PR/SET07|Setd8	lysine methyltransferase 5A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-69391784-4	chr13	69391731	69391931	+	828.983337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	142033.0	NM_198600	210106.0	Mm.315959	NM_198600	ENSMUSG00000034575	Papd7	LAK-1|POLK|Pols|TRF4|TRF4-1	PAP associated domain containing 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-87482827-2	chr6	87482724	87482924	+	685.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037727, intron 4 of 10)	intron (NM_001037727, intron 4 of 10)	13503.0	NR_104483	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	-0.0314508550903514	0.311568693776728	-0.155763494386803	-0.15898869870934	0.28703382888323	-0.150616732232231	-0.154839344250878	0.129352103106392	0.310777745947171	0.88966406404927	1
Merged-chr12-112562778-3	chr12	112562646	112562846	+	775.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	-26038.0	NM_198411	70435.0	Mm.250193	NM_198411	ENSMUSG00000037679	Inf2	2610204M08Rik|AA589465|AW125550|EG629699	inverted formin, FH2 and WH2 domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-69222173-4	chr10	69222077	69222277	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252638, intron 2 of 11)	MTC|LTR|ERVL-MaLR	8983.0	NM_001252638	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-60104934-4	chr11	60104833	60105033	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009021)	promoter-TSS (NM_009021)	-80.0	NM_009021	19377.0	Mm.296366	NM_009021	ENSMUSG00000062115	Rai1	Gt1	retinoic acid induced 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-35986531-4	chr16	35986431	35986631	+	919.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008465, intron 1 of 13)	intron (NM_008465, intron 1 of 13)	3168.0	NM_008465	16646.0	Mm.3991	NM_008465	ENSMUSG00000022905	Kpna1	AW494490|IPOA5|NPI1|Rch2|mSRP1	karyopherin (importin) alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127849290-4	chr7	127849205	127849405	+	927.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009294)	TTS (NM_009294)	7497.0	NM_009294	20909.0	Mm.24867	NM_009294	ENSMUSG00000030805	Stx4a	Stx4|Syn-4|Syn4	syntaxin 4A (placental)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-98814019-3	chr14	98813925	98814125	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	232111.0	NM_175245	76789.0	Mm.38912	NM_175245	ENSMUSG00000033186	Mzt1	2410129H14Rik|AI120158|Mozart1	mitotic spindle organizing protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-5115130-4	chr11	5115011	5115211	+	988.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080595, intron 13 of 14)	intron (NM_080595, intron 13 of 14)	14946.0	NM_001290493	279766.0	Mm.260866	NM_177370	ENSMUSG00000034175	Rhbdd3	Ptag	rhomboid domain containing 3	protein-coding	3.59186566004984	3.33612471512189	2.49913833587828	4.25814864697843	3.16963934720404	4.39328999845838	4.44406271517329	3.13791847117651	0.507160563428113	0.401783153629854	0.887117091875413
Merged-chr4-146493471-2	chr4	146493371	146493571	+	808.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8529.0	NM_001243138	100041433.0	Mm.441741	NM_001243138	ENSMUSG00000056300	Zfp981	Gm13247	zinc finger protein 981	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-26932596-4	chr3	26932485	26932685	+	971.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029150, intron 10 of 10)	intron (NM_029150, intron 10 of 10)	221269.0	NM_007900	13605.0	Mm.261453	NM_007900	ENSMUSG00000027699	Ect2	AI528536	ect2 oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-134231096-2	chr5	134230996	134231196	+	732.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-1471.0	NR_104383	17969.0	Mm.425296	NM_010876	ENSMUSG00000015950	Ncf1	NCF-47K|NOXO2|Ncf-1|p47-phox|p47<phox>|p47phox	neutrophil cytosolic factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-94612456-4	chr3	94612346	94612546	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011656)	TTS (NM_011656)	-29730.0	NM_029721	76742.0	Mm.28160	NM_029721	ENSMUSG00000028136	Snx27	5730552M22Rik|ESTM45|ESTM47|R75405	sorting nexin family member 27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-88194591-2	chr11	88194486	88194686	+	720.416626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_198013)	TTS (NM_198013)	480.0	NM_001291270	64656.0	Mm.168680	NM_024174	ENSMUSG00000023723	Mrps23	D11Bwg1153e|MRP-S23|Rpms23|S23mt	mitochondrial ribosomal protein S23	protein-coding	2.05788613995479	2.23305043619794	1.94026478666292	1.06838750078153	1.04227357187078	1.57361725181469	1.68815350830691	2.09893275079586	-0.677854905256066	0.559836906629636	0.960321604678676
Merged-chr14-31398870-1	chr14	31398770	31398970	+	541.0	f1_c57bl6.idr	intron (NM_001347585, intron 2 of 7)	intron (NM_001347585, intron 2 of 7)	18807.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-173185503-2	chr2	173185403	173185603	+	563.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32430.0	NM_011044	18534.0	Mm.266867	NM_011044	ENSMUSG00000027513	Pck1	AI265463|PEPCK|PEPCK-C|Pck-1	phosphoenolpyruvate carboxykinase 1, cytosolic	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167677474-2	chr2	167677374	167677574	+	620.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-11441.0	NM_009883	12608.0	Mm.439656	NM_009883	ENSMUSG00000056501	Cebpb	C/EBPbeta|CRP2|IL-6DBP|LAP|LIP|NF-IL6|NF-M|Nfil6	CCAAT/enhancer binding protein (C/EBP), beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44483986-2	chr9	44483886	44484086	+	771.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357490, intron 1 of 7)	intron (NM_001357490, intron 1 of 7)	1161.0	NM_001357490	80288.0	Mm.370270	NM_030256	ENSMUSG00000063382	Bcl9l	B9L|BC003321|BCL9-2|DLNB11	B cell CLL/lymphoma 9-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-157554510-5	chr1	157554428	157554628	+	737.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159986, intron 14 of 25)	intron (NM_001159986, intron 14 of 25)	28358.0	NM_001159986	89867.0	Mm.87114	NM_033354	ENSMUSG00000026589	Sec16b	Lztr2|Rgpr|Rgpr-p117	SEC16 homolog B (S. cerevisiae)	protein-coding	-1.33793447301127	-1.30826030895896	-1.31828845321677	-1.32652586948969	-0.950077789383471	-1.30608716826488	-1.15822981092724	-1.32505137591525	2.29714043412452	0.496446034091415	1
Merged-chr17-56471120-2	chr17	56471020	56471220	+	570.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252455, intron 1 of 27)	intron (NM_001252455, intron 1 of 27)	5360.0	NM_001252455	19280.0	Mm.258771	NM_011218	ENSMUSG00000013236	Ptprs	AL022616|PTP|PTP-NU3|PTPNU-3|PTPsigma|Ptpt9|R-PTP-S|RPTPsigma	protein tyrosine phosphatase, receptor type, S	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-118097596-3	chr5	118097497	118097697	+	865.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172721, intron 5 of 10)	intron (NM_172721, intron 5 of 10)	57861.0	NM_172721	231672.0	Mm.221769	NM_172721	ENSMUSG00000032867	Fbxw8	4930438M06Rik|FBW6|FBW8|FBXO29|Fbx29	F-box and WD-40 domain protein 8	protein-coding	-2.18138529563533	-2.15523716995652	-2.1631445789866	-2.16963996020037	-2.05513010215571	-2.15352360143315	-2.16135451490766	-2.16847729006863	0.759018020146679	0.829933115115583	1
Merged-chr9-90061122-4	chr9	90061023	90061223	+	949.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001312649, intron 2 of 10)	intron (NM_001312649, intron 2 of 10)	6856.0	NM_001312649	13036.0	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	0.99885227794298	1.32397418529731	0.663150984322271	2.07524838710631	0.836634467512257	1.84770871278659	0.667057893743812	0.6517141061946	-0.863875522159515	0.558139111355678	0.960321604678676
Merged-chr6-5509335-3	chr6	5509198	5509398	+	921.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	-13020.0	NM_013743	27273.0	Mm.235547	NM_013743	ENSMUSG00000019577	Pdk4	AV005916	pyruvate dehydrogenase kinase, isoenzyme 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-21935479-3	chr13	21935369	21935569	+	939.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9625.0	NM_183014	193452.0	Mm.187446	NM_183014	ENSMUSG00000006720	Zfp184	4930500C15Rik	zinc finger protein 184 (Kruppel-like)	protein-coding	2.50587815464756	1.81092783485118	3.06822452989525	2.02353344247025	1.79287686342359	2.55760427609849	1.28778400386426	2.03427059596026	-1.0339991259837	0.278175435144045	0.781792858737504
Merged-chr15-6556426-2	chr15	6556326	6556526	+	599.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23421.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-143072742-2	chr6	143072642	143072842	+	660.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001362115, intron 7 of 26)	intron (NM_001362115, intron 7 of 26)	27410.0	NM_001362118	74741.0	Mm.130260	NM_029081	ENSMUSG00000030279	C2cd5	5730419I09Rik|C030008B15Rik|CDP138	C2 calcium-dependent domain containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-151996477-4	chr2	151996358	151996558	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027172)	promoter-TSS (NM_027172)	-53.0	NM_027172	69698.0	Mm.258262	NM_027172	ENSMUSG00000027463	Slc52a3	2310046K01Rik|RFT2	solute carrier protein family 52, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83079969-2	chr11	83079869	83080069	+	736.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR8|LTR|ERVK	14857.0	NM_011408	20556.0	Mm.278689	NM_011408	ENSMUSG00000072620	Slfn2	Shlf2	schlafen 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118668719-3	chr9	118668611	118668811	+	847.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_133721, exon 9 of 28)	exon (NM_133721, exon 9 of 28)	-42981.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-6343776-3	chr7	6343708	6343908	+	894.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13374.0	NM_001033249	213011.0	Mm.333558	NM_001033249	ENSMUSG00000030443	Zfp583	BC056221|Znf583	zinc finger protein 583	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-113627306-2	chr5	113627206	113627406	+	682.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008153, intron 1 of 2)	intron (NM_008153, intron 1 of 2)	16297.0	NM_001359060	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-79403298-4	chr15	79403201	79403401	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253817)	promoter-TSS (NM_001253817)	2.0	NM_172608	223693.0	Mm.323358	NM_172608	ENSMUSG00000009035	Tmem184b	2610507A11|4732495E13Rik	transmembrane protein 184b	protein-coding	4.49698859999456	4.45347792182023	3.5501171600602	4.34894270691221	3.86709276314687	3.24684931709944	4.49492919187704	3.99555835970556	-0.388431956278596	0.409521644448078	0.893461151064622
Merged-chr4-53106225-2	chr4	53106125	53106325	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 7 of 49)	intron (NM_013454, intron 7 of 49)	53670.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-79852939-4	chr3	79852838	79853038	+	962.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F|LTR|ERVL-MaLR	-10276.0	NM_027495	70652.0	Mm.46635	NM_027495	ENSMUSG00000027956	Tmem144	1110057I03Rik|5730537D05Rik	transmembrane protein 144	protein-coding	3.30615408148976	3.21443480163171	3.21443954577579	2.88759890287103	3.88569681112911	3.55990508293397	4.23545249320104	4.2535462956888	1.27743436860871	0.0132184010561782	0.132751988732164
Merged-chr4-115096209-3	chr4	115096059	115096259	+	708.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7451.0	NM_001164557	67182.0	Mm.30181	NM_026018	ENSMUSG00000028716	Pdzk1ip1	0610007F13Rik|2700030M23Rik|AU046042|Map17	PDZK1 interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-37396310-2	chr6	37396210	37396410	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178661, intron 1 of 11)	intron (NM_178661, intron 1 of 11)	45838.0	NM_178661	208647.0	Mm.169929	NM_178661	ENSMUSG00000038648	Creb3l2	BBF2H7|C530025K05Rik|SCIRR69	cAMP responsive element binding protein 3-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-67343756-2	chr17	67343656	67343856	+	837.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	10703.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-74960940-4	chr15	74960844	74961044	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5838.0	NM_001164040	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	5.23403213202557	6.07963597535665	6.36315306028083	6.3175015001553	5.82634825056607	6.1158680590159	6.3356390571994	6.68459245183228	0.2359811966309	0.397035921617029	0.883497485228651
Merged-chr2-121294202-3	chr2	121294107	121294307	+	699.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_032393, intron 2 of 6)	intron (NM_032393, intron 2 of 6)	-1247.0	NM_001173506	17754.0	Mm.36501	NM_032393	ENSMUSG00000027254	Map1a	6330416M19Rik|AI853608|Mtap-1|Mtap1|Mtap1a|moth1	microtubule-associated protein 1 A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-4916208-2	chr11	4916108	4916308	+	581.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_172438, intron 12 of 19)	intron (NM_172438, intron 12 of 19)	-2308.0	NR_102683	100359413.0		NR_102683	ENSMUSG00000084381	AA413626	-	ribosomal protein L17 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-138126986-4	chr1	138126864	138127064	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001268286, intron 2 of 28)	intron (NM_001268286, intron 2 of 28)	48162.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-30873120-3	chr1	30873019	30873219	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-9863.0	NM_001081080	213109.0	Mm.194486	NM_025871	ENSMUSG00000048874	Phf3	2310061N19Rik	PHD finger protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83649220-3	chr6	83649112	83649312	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016751, intron 4 of 6)	intron (NM_016751, intron 4 of 6)	6904.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-30657984-4	chr13	30657864	30658064	+	937.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2095.0	NM_001037955	105352.0	Mm.289646	NM_134068	ENSMUSG00000069255	Dusp22	JKAP|JSP1|LMW-DSP2|MKPX	dual specificity phosphatase 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-121885988-1	chr3	121885888	121886088	+	546.0	f1_balb.idr	Intergenic	Intergenic	-67241.0	NM_172525	214137.0	Mm.229287	NM_172525	ENSMUSG00000039831	Arhgap29	6720461J18Rik|A830014I19|AU040217|B130017I01Rik|C76601|Parg1	Rho GTPase activating protein 29	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100495911-4	chr7	100495830	100496030	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011671, intron 2 of 7)	intron (NM_011671, intron 2 of 7)	2572.0	NM_011671	22228.0	Mm.171378	NM_011671	ENSMUSG00000033685	Ucp2	Slc25a8|UCP 2|UCPH	uncoupling protein 2 (mitochondrial, proton carrier)	protein-coding	1.42655195801856	2.1776884449335	1.20807695742108	1.74820160615483	2.01076663614261	1.25069360878714	1.21585748025762	1.18531823198652	-0.679882456773968	0.557373410001629	0.960321604678676
Merged-chr6-47562546-4	chr6	47562385	47562585	+	720.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146689, intron 3 of 19)	intron (NM_001146689, intron 3 of 19)	32545.0	NM_001146689	14056.0	Mm.246688	NM_007971	ENSMUSG00000029687	Ezh2	Enx-1|Enx1h|KMT6|mKIAA4065	enhancer of zeste 2 polycomb repressive complex 2 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70064457-2	chr14	70064357	70064557	+	984.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12988.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-86972157-4	chr10	86972054	86972254	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138673, intron 6 of 68)	LTR41B|LTR|ERVL	35788.0	NM_138673	192188.0	Mm.279611	NM_138673	ENSMUSG00000035459	Stab2	FEEL-2|FELL|MFEEL-2|STAB-2	stabilin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-118052382-7	chr10	118052273	118052473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-89414.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	4.900106640539	5.32763495419629	5.30600499767671	5.97459426188808	6.04788404444673	5.85424422389397	5.49929643552889	6.44831904578881	0.646793845252991	0.0325929600941746	0.251749142838996
Merged-chr1-24572792-2	chr1	24572692	24572892	+	548.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007733, intron 2 of 50)	intron (NM_007733, intron 2 of 50)	14645.0	NM_007733	12823.0	Mm.329196	NM_007733	ENSMUSG00000026141	Col19a1	-	collagen, type XIX, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-45299432-4	chr9	45299318	45299518	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19682.0	NM_001013373	214531.0	Mm.394987	NM_001013373	ENSMUSG00000037129	Tmprss13	BC010843|Tpmrss13	transmembrane protease, serine 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-17917543-2	chr16	17917443	17917643	+	790.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-2484.0	NM_029469	195333.0	Mm.463003	NM_029469	ENSMUSG00000022738	Gsc2	4930568H22Rik|GSC-2|Gscl	goosecoid homebox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127551152-2	chr10	127551052	127551252	+	776.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 63 of 88)	intron (NM_008512, intron 63 of 88)	-16593.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	1.17288074723968	0.50473180600201	0.495311670824224	0.951381639249582	1.00391807760148	0.506843195471852	0.497397028565346	1.3574902153418	0.387842280542321	0.823855842419171	1
Merged-chr15-79060040-2	chr15	79059940	79060140	+	573.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144849, intron 2 of 7)	B4A|SINE|B4	2819.0	NM_144849	223690.0	Mm.24262	NM_144849	ENSMUSG00000033055	Ankrd54	C730048E16Rik|EST1068184|EST475269|Liar	ankyrin repeat domain 54	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-151748701-4	chr3	151748638	151748838	+	810.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133871, intron 2 of 7)	intron (NM_133871, intron 2 of 7)	1221.0	NM_133871	99899.0	Mm.30756	NM_133871	ENSMUSG00000028037	Ifi44	A430056A10Rik|AW261460|MTAP44|p44	interferon-induced protein 44	protein-coding	2.75794764557858	1.67865921162958	2.02573501418231	2.97604103468423	2.15394841322359	2.95961435969776	1.36931957200694	2.59561489589676	-0.15382244944781	0.868399475702126	0.998431161219273
Merged-chr9-32542470-3	chr9	32542371	32542571	+	837.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1019.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-147609867-2	chr4	147609767	147609967	+	572.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32641.0	NM_145078	112422.0	Mm.327194	NM_145078	ENSMUSG00000066000	Zfp979	2610305D13Rik|Ssm1b	zinc finger protein 979	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-24530344-4	chr6	24530219	24530419	+	905.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080847, intron 1 of 9)	intron (NM_080847, intron 1 of 9)	2175.0	NM_080847	78910.0	Mm.160150	NM_080847	ENSMUSG00000029685	Asb15	4930400E23Rik|Asb-15	ankyrin repeat and SOCS box-containing 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47755209-2	chr17	47755109	47755309	+	789.599976	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161723, intron 1 of 8)	intron (NM_001161723, intron 1 of 8)	17278.0	NM_001161723	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-3487570-4	chr6	3487456	3487656	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178899, intron 1 of 9)	intron (NM_178899, intron 1 of 9)	6942.0	NM_178899	101202.0	Mm.206911	NM_178899	ENSMUSG00000044156	Hepacam2	AI987662	HEPACAM family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-44167173-2	chr12	44167073	44167273	+	863.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42895.0	NM_013760	27362.0	Mm.27432	NM_013760	ENSMUSG00000014905	Dnajb9	AA408011|AA673251|AA673481|AW556981|ERdj4|Mdg1|mDj7	DnaJ heat shock protein family (Hsp40) member B9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-108782030-4	chr6	108781894	108782094	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-1065.0	NM_026011	67166.0	Mm.271178	NM_026011	ENSMUSG00000030105	Arl8b	2610313E07Rik|3100002J04Rik|Arl10c|gie1	ADP-ribosylation factor-like 8B	protein-coding	3.71017800297721	3.84423710019761	3.95621151231755	4.93477608493344	4.3415006117176	4.33531400067752	4.88049305557005	5.07889220848357	0.620564636865106	0.156493534260589	0.612530260132193
Merged-chr5-122284758-2	chr5	122284658	122284858	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_177242, exon 1 of 6)	exon (NM_177242, exon 1 of 6)	360.0	NM_177242	320717.0	Mm.489670	NM_177242	ENSMUSG00000038582	Pptc7	9130017A15Rik|AA672638|AI848390|TA-PP2C	PTC7 protein phosphatase homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-4431502-2	chr10	4431402	4431602	+	643.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358796, intron 1 of 13)	intron (NM_001358796, intron 1 of 13)	886.0	NM_025343	66084.0	Mm.153111	NM_025343	ENSMUSG00000019763	Rmnd1	0610042C05Rik|AA408137|AI462664|AW536662	required for meiotic nuclear division 1 homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-32469235-2	chr9	32469135	32469335	+	626.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008026, intron 2 of 8)	intron (NM_008026, intron 2 of 8)	72217.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101905278-2	chr11	101905178	101905378	+	971.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10924.0	NM_010791	17285.0	Mm.3404	NM_010791	ENSMUSG00000001493	Meox1	AI385561|D330041M02Rik|Mox-1|Mox1	mesenchyme homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-35164308-3	chr2	35164199	35164399	+	686.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012018, intron 31 of 43)	intron (NM_012018, intron 31 of 43)	32065.0	NM_001290635	26920.0	Mm.231332	NM_012018	ENSMUSG00000057110	Cntrl	6720467O09Rik|AA968343|Cep1|Cep110|IB3/5|Ma2a8|b2b1468.1Clo|b2b1468Clo	centriolin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-21479168-4	chr13	21479063	21479263	+	949.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001039115, exon 1 of 3)	exon (NM_001039115, exon 1 of 3)	314.0	NM_001039115	544922.0	Mm.441300	NM_001039115	ENSMUSG00000054931	Zkscan4	AI841875|Gm11272	zinc finger with KRAB and SCAN domains 4	protein-coding	4.72957203216669	2.53384269242138	4.15939766008077	3.47717313352787	5.29749889768158	3.65369297644654	5.78332484548642	5.58047583998645	1.62882898200231	0.0378398608705179	0.276672520262425
Merged-chr15-41830871-4	chr15	41830775	41830975	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001130164)	promoter-TSS (NM_001130164)	-83.0	NM_001130164	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-105032462-4	chr12	105032360	105032560	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_003145)	promoter-TSS (NR_003145)	-158.0	NM_028419	73046.0	Mm.29128	NM_028419	ENSMUSG00000021102	Glrx5	-	glutaredoxin 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-33084365-4	chr13	33084227	33084427	+	812.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173052, intron 1 of 6)	intron (NM_173052, intron 1 of 6)	224.0	NM_173052	282663.0	Mm.314490	NM_173052	ENSMUSG00000051029	Serpinb1b	6330533H24Rik|EIB|Serpin1b1|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 1b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21506065-2	chr9	21505965	21506165	+	777.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357721, intron 19 of 19)	RSINE1|SINE|B4	3829.0	NM_001324510	17083.0	Mm.196618	NM_010744	ENSMUSG00000032180	Tmed1	Il1rl1l|Ly84l|St2l	transmembrane p24 trafficking protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-139761405-3	chr4	139761295	139761495	+	874.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011039, intron 7 of 8)	intron (NM_011039, intron 7 of 8)	71573.0	NM_011039	18509.0	Mm.218760	NM_011039	ENSMUSG00000028736	Pax7	Pax-7	paired box 7	protein-coding	4.08972609814567	3.74006208965928	2.88468979036575	4.4578369744592	1.86698694632944	2.15688614641473	1.50800306285216	3.2207394919243	-2.50080820884939	0.000644565668024293	0.0137599264372644
Merged-chr17-64721275-4	chr17	64721175	64721375	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008549, intron 16 of 21)	intron (NM_008549, intron 16 of 21)	-45836.0	NR_105051	101202683.0	Mm.393309	NR_105051		Dreh	-	down-regulated in hepatocellular carcinoma	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4677184-2	chr16	4677084	4677284	+	660.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030205, intron 1 of 27)	B4A|SINE|B4	2536.0	NM_030205	78885.0	Mm.325512	NM_030205	ENSMUSG00000039637	Coro7	0610011B16Rik|AW048373|AW556392	coronin 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132747213-2	chr4	132747113	132747313	+	792.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133888, intron 1 of 7)	intron (NM_133888, intron 1 of 7)	9958.0	NM_133888	100340.0	Mm.287187	NM_133888	ENSMUSG00000028885	Smpdl3b	1110054A24Rik|AU045240|Asml3b	sphingomyelin phosphodiesterase, acid-like 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70273114-4	chr8	70273015	70273215	+	999.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9884.0	NM_011984	26558.0	Mm.388127	NM_011984	ENSMUSG00000003573	Homer3	AW146114	homer scaffolding protein 3	protein-coding	3.04974727539257	3.41491146883945	3.21181320486229	3.70019261442368	2.79196983749959	3.43928161865964	3.32833087276754	3.13846719290463	-0.290826985172661	0.616176949222331	0.977352076822579
Merged-chr1-135427597-4	chr1	135427490	135427690	+	940.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357578, intron 1 of 24)	intron (NM_001357578, intron 1 of 24)	2901.0	NM_153774	226432.0	Mm.271642	NM_153774	ENSMUSG00000041879	Ipo9	0710008K06Rik|AI845704|C78347|Imp9|Ranbp9	importin 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5848887-2	chr17	5848787	5848987	+	997.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025664, intron 1 of 17)	intron (NM_025664, intron 1 of 17)	7507.0	NM_025664	66616.0	Mm.89515	NM_025664	ENSMUSG00000002365	Snx9	2700073N08Rik|SDP1|SH3PX1	sorting nexin 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-101223297-4	chr4	101223199	101223399	+	877.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146145, intron 1 of 24)	intron (NM_146145, intron 1 of 24)	41983.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-36711976-4	chr16	36711901	36712101	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285788, intron 3 of 7)	intron (NM_001285788, intron 3 of 7)	18023.0	NM_001285791	106347.0	Mm.17807	NM_134109	ENSMUSG00000022900	Ildr1	AU041483|AU044638	immunoglobulin-like domain containing receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-40147693-4	chr4	40147607	40147807	+	767.604187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007386, intron 1 of 20)	ORR1C1|LTR|ERVL-MaLR	4442.0	NM_007386	11428.0	Mm.331547	NM_007386	ENSMUSG00000028405	Aco1	Aco-1|Irebp|Irp1	aconitase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88521914-4	chr3	88521817	88522017	+	972.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10478.0	NM_001029890	72640.0	Mm.275154	NM_001029890	ENSMUSG00000074480	Mex3a	2700083E18Rik|Gm411|Rkhd4	mex3 RNA binding family member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31183870-4	chr14	31183803	31184003	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001347583, exon 14 of 14)	3' UTR (NM_001347583, exon 14 of 14)	-15262.0	NM_138672	192187.0	Mm.220821	NM_138672	ENSMUSG00000042286	Stab1	FEEL-1|FELE-1|MFEEL-1|MS-1|STAB-1|mKIAA0246	stabilin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-165761671-3	chr1	165761565	165761765	+	805.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-2093.0	NR_149310	433375.0	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-102873581-3	chr2	102873486	102873686	+	789.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039150, intron 1 of 13)	intron (NM_001039150, intron 1 of 13)	28079.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	1.6062005113376	1.30179509315332	2.7847035694159	2.00921966391153	1.61905150912539	2.64390692213378	2.64417006096517	2.26864015780014	0.658352515387606	0.500365006608392	0.938059363548374
Merged-chr6-125335899-1	chr6	125335799	125335999	+	686.5	f1_c57bl6.idr	intron (NM_011324, intron 3 of 11)	intron (NM_011324, intron 3 of 11)	-13824.0	NM_011609	21937.0	Mm.1258	NM_011609	ENSMUSG00000030341	Tnfrsf1a	CD120a|FPF|TNF-R|TNF-R-I|TNF-R1|TNF-R55|TNF-alphaR1|TNFAR|TNFR60|TNFRI|TNFRp55|TNFalpha-R1|Tnfr-2|Tnfr1|p55|p55-R	tumor necrosis factor receptor superfamily, member 1a	protein-coding	0.545739598984541	0.643906246649753	0.830591282511614	0.87870111634406	0.437924926718708	0.325705319375264	0.320537512846719	0.316169125661576	-3.39532854326795	0.0643988833841985	1
Merged-chr2-35259762-2	chr2	35259662	35259862	+	772.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001206368, intron 1 of 16)	intron (NM_001206368, intron 1 of 16)	3403.0	NM_001206368	227753.0	Mm.443	NM_146120	ENSMUSG00000026879	Gsn	ADF	gelsolin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-58446420-4	chr10	58446330	58446530	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011240)	promoter-TSS (NM_011240)	-422.0	NM_011240	19386.0	Mm.431695	NM_011240	ENSMUSG00000003226	Ranbp2	A430087B05Rik|AI256741|NUP358	RAN binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-120568865-2	chr2	120568765	120568965	+	768.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009222, intron 1 of 7)	PB1D9|SINE|Alu	1194.0	NM_009222	20619.0	Mm.245715	NM_009222	ENSMUSG00000027287	Snap23	23kDa|AA408749|SNAP-23|Sndt|Syndet	synaptosomal-associated protein 23	protein-coding	-1.08120490705759	-1.06173973343125	-1.07249735266572	-0.921468072836018	-0.716385898161223	-1.05940851246666	-1.07006206347133	-0.91895648481258	1.54026781326716	0.61075092937384	1
Merged-chr12-78225904-3	chr12	78225814	78226014	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145965)	promoter-TSS (NM_145965)	-741.0	NM_172952	268566.0	Mm.341742	NM_145965	ENSMUSG00000047454	Gphn	5730552E08Rik|AI662856|BC027112|C230040D23|GPH|GPHRYN|geph	gephyrin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-52982790-4	chr2	52982735	52982935	+	923.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	B4A|SINE|B4	124967.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-115480473-4	chr6	115480378	115480578	+	989.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001308354, intron 7 of 7)	intron (NM_001308354, intron 7 of 7)	58412.0	NM_011146	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-138995014-4	chr5	138994906	138995106	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008808)	promoter-TSS (NM_008808)	-53.0	NM_008808	18590.0	Mm.2675	NM_008808	ENSMUSG00000025856	Pdgfa	-	platelet derived growth factor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80923390-2	chr10	80923290	80923490	+	991.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C|LTR|ERVK	-5145.0	NM_010722	16907.0	Mm.7362	NM_010722	ENSMUSG00000062075	Lmnb2	-	lamin B2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115543525-2	chr5	115543456	115543656	+	719.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_011223, intron 1 of 10)	intron (NM_011223, intron 1 of 10)	-15911.0	NM_007475	11837.0	Mm.5286	NM_007475	ENSMUSG00000067274	Rplp0	36B4|Arbp|L10E	ribosomal protein, large, P0	protein-coding	2.90373479448041	2.84229122050236	2.11039685760958	1.53393358238413	2.55050913423951	1.85328731939995	1.58322125549483	2.06081595626741	-0.902621456591249	0.332648206541405	0.833345452772687
Merged-chr12-112875762-4	chr12	112875671	112875871	+	952.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14855.0	NM_019925	56696.0	Mm.20455	NM_019925	ENSMUSG00000021298	Gpr132	G2a	G protein-coupled receptor 132	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-66914297-3	chr8	66914189	66914389	+	688.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	54072.0	NM_001163564	234344.0	Mm.334561	NM_001163564	ENSMUSG00000014907	Naf1	Gm174	nuclear assembly factor 1 ribonucleoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90564827-2	chr2	90564727	90564927	+	829.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	15820.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117431285-1	chr10	117431185	117431385	+	986.0	f1_c57bl6.idr	Intergenic	Intergenic	16150.0	NR_152734	102634600.0	Mm.399106	NR_152734	ENSMUSG00000112344	Gm32141	-	predicted gene, 32141	ncRNA	0.0894783004792977	-0.263469966872882	-0.267752257029979	-0.271050060776176	-0.0102299035298647	-0.262503434752835	0.399769083730887	-0.270474323260327	1.50088669380155	0.54050573897156	1
Merged-chr7-143461122-4	chr7	143461030	143461230	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161624)	promoter-TSS (NM_001161624)	-80.0	NM_001161624	12577.0	Mm.168789	NM_009876	ENSMUSG00000037664	Cdkn1c	AL024410|CDKI|Kip2|p57(kip2)|p57Kip2	cyclin-dependent kinase inhibitor 1C (P57)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-91990919-3	chr13	91990799	91990999	+	648.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2857.0	NM_009027	19418.0	Mm.248630	NM_009027	ENSMUSG00000021708	Rasgrf2	6330417G04Rik|AW048350|Grf2|Ras-GRF2	RAS protein-specific guanine nucleotide-releasing factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30044232-2	chr2	30044132	30044332	+	636.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001008498, intron 1 of 8)	B2_Mm2|SINE|B2	4647.0	NM_001008498	71820.0	Mm.88053	NM_001008498	ENSMUSG00000039715	Wdr34	3200002I06Rik	WD repeat domain 34	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-51107773-2	chr8	51107673	51107873	+	779.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13A1|LTR|ERVK	739661.0	NR_046067	100039954.0	Mm.400419	NR_046067	ENSMUSG00000110281	Gm2516	-	predicted gene 2516	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-122249506-2	chr7	122249406	122249606	+	667.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30010.0	NM_027363	70261.0	Mm.96997	NM_027363	ENSMUSG00000030865	Chp2	2010110P09Rik|Cbhp2	calcineurin-like EF hand protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-44419128-3	chr17	44419025	44419225	+	848.638916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	230553.0	NM_172621	224796.0	Mm.37666	NM_172621	ENSMUSG00000023959	Clic5	5730531E12Rik|B330005L24|Gm322|jbg|nmf318	chloride intracellular channel 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171411747-1	chr1	171411647	171411847	+	1000.0	f1_balb.idr	promoter-TSS (NM_009480)	promoter-TSS (NM_009480)	66.0	NM_009480	22278.0	Mm.8	NM_009480	ENSMUSG00000026641	Usf1	bHLHb11	upstream transcription factor 1	protein-coding	1.80863652669517	1.88136432054057	1.43950484118392	2.03569935166903	2.05161093671533	2.19123735073823	1.19554993352014	2.91035109989496	1.08085418912022	0.289825342057297	0.795360911821054
Merged-chr11-69109717-2	chr11	69109603	69109803	+	575.75	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011065, exon 23 of 23)	3' UTR (NM_011065, exon 23 of 23)	9551.0	NM_001159367	18626.0	Mm.7373	NM_011065	ENSMUSG00000020893	Per1	Hftm|Per|m-rigui|mPer1	period circadian clock 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-164785891-4	chr2	164785786	164785986	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133924)	promoter-TSS (NM_133924)	-135.0	NM_133924	101113.0	Mm.295647	NM_133924	ENSMUSG00000050373	Snx21	5730407K14Rik|AI481716	sorting nexin family member 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134253855-2	chr6	134253758	134253958	+	645.0	f0_balb.idr|f1_balb.idr	intron (NM_001303102, intron 6 of 8)	intron (NM_001303102, intron 6 of 8)	-142471.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	0.801106498291517	1.16258976016758	2.30653006232238	0.836250612887034	1.65257362525502	1.59178517365343	0.862018225877239	2.58039164903105	0.950011371264049	0.4772434418279	0.927980290875356
Merged-chr19-12575568-5	chr19	12575385	12575585	+	826.43335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026640, intron 1 of 3)	B1_Mm|SINE|Alu	1960.0	NM_026640	107373.0	Mm.1643	NM_026640	ENSMUSG00000024691	Fam111a	4632417K18Rik|AW413625	family with sequence similarity 111, member A	protein-coding	2.28584838628365	1.2736723673918	1.97033499136838	2.2393603689574	2.22683617482273	1.73230535908243	2.22192997038011	1.63548177641665	-0.0622658324770265	0.950479030648205	0.998431161219273
Merged-chr15-77833910-2	chr15	77833810	77834010	+	609.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_022410, intron 1 of 40)	MTD|LTR|ERVL-MaLR	8265.0	NM_022410	17886.0	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-16145799-2	chr13	16145699	16145899	+	836.799988	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-122376.0	NR_155430	100503142.0	Mm.359204	NR_155430		B230303A05Rik	B230303A05|EG328191	U1 small nuclear ribonucleoprotein 1C pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-21461410-4	chr19	21461284	21461484	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010266, intron 1 of 13)	L1MB5|LINE|L1	11277.0	NM_010266	14544.0	Mm.45054	NM_010266	ENSMUSG00000058624	Gda	AU015411|AW047581|GAH	guanine deaminase	protein-coding	3.63669806476295	3.99685604508536	3.72348802731893	3.17193706892875	4.13065492165202	4.57663672912066	3.40088185260331	3.38830107465738	0.443961113432011	0.3948960095485	0.882837719236596
Merged-chr11-83443040-2	chr11	83442940	83443140	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_080453, intron 7 of 7)	intron (NM_080453, intron 7 of 7)	5346.0	NM_025492	66330.0	Mm.44800	NM_025492	ENSMUSG00000035085	1700020L24Rik	-	RIKEN cDNA 1700020L24 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-150894751-4	chr2	150894626	150894826	+	832.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151505, intron 1 of 12)	intron (NR_151505, intron 1 of 12)	10005.0	NM_024465	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-37927302-3	chr8	37927212	37927412	+	626.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145841, intron 2 of 7)	intron (NM_145841, intron 2 of 7)	324890.0	NR_029884	723860.0		NR_029884	ENSMUSG00000065457	Mir383	Mirn383|mir-383|mmu-mir-383	microRNA 383	ncRNA	2.77611950080827	2.33515907712416	3.58697203837361	3.17289803065984	2.24331544820477	2.35276070415062	3.42928441509196	2.50255535671493	-0.582189411937332	0.428930883487864	0.903416445927044
Merged-chr8-35498480-4	chr8	35498372	35498572	+	964.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-2939.0	NM_026067	67276.0	Mm.207534	NM_026067	ENSMUSG00000031527	Eri1	3'hexo|3110010F15Rik|Thex1|eri-1	exoribonuclease 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-103285173-3	chr4	103285062	103285262	+	849.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027612, intron 1 of 8)	intron (NM_027612, intron 1 of 8)	5701.0	NM_027612	70941.0	Mm.158501	NM_027612	ENSMUSG00000028520	4921539E11Rik	-	RIKEN cDNA 4921539E11 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-108573975-2	chr9	108573875	108574075	+	686.43335	f1_balb.idr|f1_c57bl6.idr	exon (NM_031392, exon 3 of 6)	exon (NM_031392, exon 3 of 6)	4083.0	NM_026378	67789.0	Mm.458081	NM_026378	ENSMUSG00000019039	Dalrd3	6330580J24Rik|C77829|mir-425	DALR anticodon binding domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-11549648-2	chr2	11549548	11549748	+	930.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177758, intron 1 of 14)	ID_B1|SINE|B4	4281.0	NM_001177758	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41994324-2	chr19	41994224	41994424	+	733.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145500, intron 1 of 2)	intron (NM_145500, intron 1 of 2)	12561.0	NM_145500	226122.0	Mm.22948	NM_145500	ENSMUSG00000025171	Ubtd1	BC016129	ubiquitin domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-70706383-2	chr17	70706283	70706483	+	765.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360665, intron 9 of 14)	B4|SINE|B4	140394.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-12881195-1	chr2	12881095	12881295	+	576.0	f0_balb.idr	Intergenic	Intergenic	-42846.0	NM_008961	19212.0	Mm.229322	NM_008961	ENSMUSG00000026730	Pter	AI790318|Mpr56-1	phosphotriesterase related	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36375191-2	chr1	36375091	36375291	+	639.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001277076, exon 4 of 53)	exon (NM_001277076, exon 4 of 53)	2900.0	NM_001277076	100534273.0	Mm.389112	NM_001277076	ENSMUSG00000037432	Fer1l5	4930533C12Rik	fer-1-like 5 (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-47142553-3	chr19	47142405	47142605	+	680.083313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081271, intron 1 of 1)	intron (NM_001081271, intron 1 of 1)	1669.0	NM_001081271	546729.0	Mm.439624	NM_001081271	ENSMUSG00000079258	Calhm1	EG546729	calcium homeostasis modulator 1	protein-coding	-1.43172712806865	-1.3992492906874	-1.40907085678131	-1.41713858359971	-0.932192548427885	-1.39712091634321	-1.40684746950024	-1.41569446435649	2.19283191591698	0.528233640655333	1
Merged-chr11-96983010-2	chr11	96982910	96983110	+	636.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5322.0	NM_001080964	78912.0	Mm.491183	NM_030220	ENSMUSG00000018678	Sp2	4930480I16Rik|mKIAA0048	Sp2 transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-28796517-3	chr2	28796413	28796613	+	905.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033874, intron 11 of 12)	intron (NM_001033874, intron 11 of 12)	43847.0	NM_172977	269252.0	Mm.26043	NM_172977	ENSMUSG00000035666	Gtf3c4	5330400C03|AI426938|AU014771|AU017413|KAT12|TFIIIC90	general transcription factor IIIC, polypeptide 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-189933779-2	chr1	189933740	189933940	+	798.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11549.0	NM_026796	226830.0	Mm.156895	NM_026796	ENSMUSG00000026603	Smyd2	1110020E07Rik|4930402C15|KMT3C|Zmynd14	SET and MYND domain containing 2	protein-coding	-0.239958998587757	-0.171368201224985	-0.386271419444581	-0.390120262998305	0.586264953466709	-0.380188550798459	-0.385173878911301	-0.389446798455793	2.11069826779019	0.392693680584747	1
Merged-chr3-81047249-2	chr3	81047149	81047349	+	734.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019971, intron 1 of 5)	intron (NM_019971, intron 1 of 5)	10833.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95678293-2	chr3	95678193	95678393	+	567.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301705, intron 14 of 17)	intron (NM_001301705, intron 14 of 17)	9624.0	NM_144899	229595.0	Mm.490574	NM_144899	ENSMUSG00000015850	Adamtsl4	ADAMTSL-4|Tsrc1	ADAMTS-like 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91384177-2	chr16	91384077	91384277	+	656.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347258, intron 2 of 7)	intron (NM_001347258, intron 2 of 7)	11394.0	NM_001110498	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-46248034-4	chr17	46247934	46248134	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145353)	promoter-TSS (NM_145353)	11.0	NM_009085	20016.0	Mm.3458	NM_009085	ENSMUSG00000067148	Polr1c	40kDa|AA409007|AA959927|AL024089|Polr1e|RPA40|Rpo1-1	polymerase (RNA) I polypeptide C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-8802384-4	chr17	8802277	8802477	+	986.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011866, intron 1 of 21)	CpG	632.0	NM_011866	23984.0	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	3.3438091502046	3.49311280520261	3.4635408574174	2.97203591548855	3.5086495732533	4.27199563123272	2.49616705828569	4.07460233791888	0.626602401761479	0.287477801392545	0.793031574442311
Merged-chr3-133626818-4	chr3	133626689	133626889	+	960.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-82399.0	NM_001346736	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-74673171-3	chr2	74673040	74673240	+	694.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1873.0	NM_008274	15432.0	Mm.57124	NM_008274	ENSMUSG00000001823	Hoxd12	Hox-4.7|Hox-5.6	homeobox D12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-77845062-2	chr11	77844962	77845162	+	564.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011586, intron 27 of 39)	intron (NM_011586, intron 27 of 39)	43764.0	NM_001291215	360013.0	Mm.341248	NM_011586	ENSMUSG00000000631	Myo18a	MAJN|MyoPDZ|MysPDZ|SP-R210	myosin XVIIIA	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165326567-4	chr2	165326462	165326662	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207706)	promoter-TSS (NM_207706)	-83.0	NM_207706	140579.0	Mm.35064	NM_080287	ENSMUSG00000017670	Elmo2	1190002F24Rik|CED-12	engulfment and cell motility 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-47581139-2	chr9	47581039	47581239	+	634.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	50787.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	0.217495599461796	0.160010154945416	-0.0399960359241965	0.261877531473735	-0.0499972913441657	-0.0334207372785095	-0.0388121937241862	0.766522078104076	0.536454610697376	0.800907029259993	1
Merged-chr8-120119150-4	chr8	120119063	120119263	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172286, intron 1 of 12)	intron (NM_172286, intron 1 of 12)	5011.0	NM_001163761	234797.0	Mm.101958	NM_172286	ENSMUSG00000031824	6430548M08Rik	AW049007|Kiaa0513|mKIAA0513	RIKEN cDNA 6430548M08 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-96392113-4	chr9	96392040	96392240	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27709.0	NM_001357212	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-91299989-4	chr1	91299961	91300161	+	942.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016717, intron 1 of 11)	intron (NM_016717, intron 1 of 11)	1723.0	NM_016717	50880.0	Mm.25724	NM_016717	ENSMUSG00000026307	Scly	9830169H08|A930015N15Rik|SCL|Scly1|Scly2	selenocysteine lyase	protein-coding	-2.18138529563533	-2.15523716995652	-2.1631445789866	-2.16963996020037	-2.05513010215571	-2.15352360143315	-2.16135451490766	-2.16847729006863	0.759018020146679	0.829933115115583	1
Merged-chr19-33380539-3	chr19	33380436	33380636	+	838.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146342, intron 2 of 4)	intron (NM_001146342, intron 2 of 4)	11759.0	NM_001167818	67795.0	Mm.204591	NM_001146342	ENSMUSG00000071573	Rnls	6530404N21Rik|AI452315|AW060440|C10orf59	renalase, FAD-dependent amine oxidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-86323064-1	chr17	86322964	86323164	+	553.0	f1_balb.idr	intron (NM_011104, intron 1 of 14)	intron (NM_011104, intron 1 of 14)	-35886.0	NR_045435	72104.0	Mm.443401	NR_045435	ENSMUSG00000100738	2010106C02Rik	-	RIKEN cDNA 2010106C02 gene	ncRNA	-0.254497298432034	-0.239407234592759	-0.24434117666208	-0.0777149815706495	-0.25355266735617	-0.238296303408546	0.551859989318469	0.196749754344285	2.9737333061074	0.211814807116464	1
Merged-chr10-79907187-2	chr10	79907087	79907287	+	704.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163276, intron 2 of 14)	intron (NM_001163276, intron 2 of 14)	1751.0	NM_001163276	216154.0	Mm.260089	NM_198107	ENSMUSG00000013833	Med16	95kDa|A630083L04|DRIP92|Thrap5|Trap95	mediator complex subunit 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-64082413-3	chr15	64082300	64082500	+	902.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID|SINE|ID	-21952.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-30887458-4	chr5	30887340	30887540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1412.0	NM_174849	231093.0	Mm.440364	NM_174849	ENSMUSG00000029165	Agbl5	9430057O19Rik|CCP5	ATP/GTP binding protein-like 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-50740275-4	chr10	50740171	50740371	+	813.770874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198007, intron 30 of 41)	intron (NM_198007, intron 30 of 41)	147602.0	NM_198007	77987.0	Mm.222497	NM_198007	ENSMUSG00000038774	Ascc3	ASC1p200|B630009I04Rik|BC023451|D430001L07Rik|D630041L21|Helic1|RNAH	activating signal cointegrator 1 complex subunit 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-103366643-4	chr15	103366520	103366720	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010577, exon 1 of 30)	5' UTR (NM_010577, exon 1 of 30)	171.0	NM_010577	16402.0	Mm.16234	NM_010577	ENSMUSG00000000555	Itga5	Cd49e|Fnra|VLA5	integrin alpha 5 (fibronectin receptor alpha)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-27508181-4	chr7	27508086	27508286	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019412, intron 5 of 5)	CpG-12884	8862.0	NM_019412	19153.0	Mm.10119	NM_019412	ENSMUSG00000053198	Prx	L-Periaxin	periaxin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-89280760-4	chr6	89280710	89280910	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131021, intron 1 of 3)	intron (NR_131021, intron 1 of 3)	4915.0	NR_131021	75131.0	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	Gm44205	RIKEN cDNA 4930512J16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-63151843-1	chr4	63151743	63151943	+	546.0	f0_balb.idr	intron (NM_007443, intron 2 of 9)	intron (NM_007443, intron 2 of 9)	2329.0	NM_007443	11699.0	Mm.2197	NM_007443	ENSMUSG00000028356	Ambp	AI194774|ASPI|HI-30|Intin4|Itil|UTI	alpha 1 microglobulin/bikunin	protein-coding	-1.84297643846673	-1.8130099360596	-1.82207205372894	-1.6869274651563	-1.84087284540582	-1.81104613735712	-1.82002058892457	-1.6855950118199	0.037684011990387	0.991491645451152	1
Merged-chr7-113614647-4	chr7	113614541	113614741	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49654.0	NR_126544	69295.0	Mm.396150	NR_126544	ENSMUSG00000084984	Far1os	1700006P19Rik	fatty acyl CoA reductase 1, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-19973094-3	chr16	19973005	19973205	+	634.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183390, intron 1 of 6)	intron (NM_183390, intron 1 of 6)	9944.0	NM_183390	239743.0	Mm.86699	NM_183390	ENSMUSG00000043008	Klhl6	-	kelch-like 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101116657-2	chr11	101116557	101116757	+	578.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_155071, intron 1 of 6)	polypurine|Low_complexity|Low_complexity	3184.0	NM_026501	67998.0	Mm.33881	NM_026501	ENSMUSG00000017802	Retreg3	1300010M03Rik|4933404C01Rik|AI551748|Fam134c	reticulophagy regulator family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-45558875-2	chr17	45558777	45558977	+	914.099976	f1_balb.idr|f1_c57bl6.idr	intron (NM_008690, intron 2 of 5)	L2c|LINE|L2	3177.0	NM_001304956	18037.0	Mm.57043	NM_008690	ENSMUSG00000023947	Nfkbie	I-kappa-B-epsilon|IKBE|IkB-E|NF-kappa-BIE|ikB-epsilon	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, epsilon	protein-coding	0.817033381418231	0.563251885616392	0.554324770611537	0.992392865473522	1.13558182413582	1.21091707705725	0.556298541519099	1.11133248060067	1.49289070017435	0.354146969105908	1
Merged-chr11-94381080-4	chr11	94381015	94381215	+	993.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029600, intron 1 of 30)	intron (NM_029600, intron 1 of 30)	11861.0	NM_029600	76408.0	Mm.23942	NM_029600	ENSMUSG00000020865	Abcc3	1700019L09Rik|ABC31|MLP2|MOAT-D|MRP3	ATP-binding cassette, sub-family C (CFTR/MRP), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-5592727-4	chr18	5592630	5592830	+	816.270874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033552)	promoter-TSS (NR_033552)	83.0	NM_001360981	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-16122335-3	chr1	16122230	16122430	+	692.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133832, intron 2 of 5)	intron (NM_133832, intron 2 of 5)	16448.0	NM_133832	98711.0	Mm.274376	NM_133832	ENSMUSG00000025921	Rdh10	3110069K09Rik|4921506A21Rik|AI875664|AW549993|D1Ertd762e|m366Asp	retinol dehydrogenase 10 (all-trans)	protein-coding	0.417812547685412	0.365600855538607	0.178145081714072	0.174001065319115	0.529116283125524	0.658789013581823	0.617367169808864	0.174724199622289	1.72928000927521	0.366520474873027	1
Merged-chr14-73525013-4	chr14	73524944	73525144	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172527, intron 3 of 4)	CpG	205.0	NM_001360484	214254.0	Mm.386852	NM_172527	ENSMUSG00000033405	Nudt15	6530403O17|A730068G11Rik|MTH2	nudix (nucleoside diphosphate linked moiety X)-type motif 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-40060869-2	chr10	40060769	40060969	+	577.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 3 of 5)	intron (NM_001114332, intron 3 of 5)	-35601.0	NM_144821	215929.0	Mm.55513	NM_144821	ENSMUSG00000038522	Mfsd4b1	AI317395|AI482555|Naglt1a	major facilitator superfamily domain containing 4B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-52094647-2	chr9	52094533	52094733	+	604.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20990.0	NR_105750	102465150.0		NR_105750	ENSMUSG00000099311	Mir6244	Gm27368|mmu-mir-6244	microRNA 6244	ncRNA	2.51514034461955	2.71886643830683	2.25758316193825	2.44571720381128	2.44215539745753	2.62419578619494	3.15143416390103	1.42222536801796	0.13399756327073	0.874769569655929	0.998431161219273
Merged-chr13-9093754-4	chr13	9093668	9093868	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311117)	promoter-TSS (NM_001311117)	-113.0	NM_001311117	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75075579-3	chr11	75075467	75075667	+	929.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001002764, intron 13 of 18)	intron (NM_001002764, intron 13 of 18)	-9576.0	NR_030454	735274.0		NR_030454	ENSMUSG00000106252	Mir684-1	Mirn684-1	microRNA 684-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81353613-2	chr10	81353513	81353713	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3156.0	NM_001163166	15353.0	Mm.38474	NM_010440	ENSMUSG00000020232	Hmg20b	AW610687|BRAF35|Hmgx2|Hmgxb2|Smarce1r	high mobility group 20B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-52955280-4	chr2	52955170	52955370	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	97402.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-47708214-7	chr9	47708115	47708315	+	979.0238039999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	109993.0	NR_046048	100038460.0	Mm.447649	NR_046048		Gm10677	-	predicted gene 10677	ncRNA	-1.01444139818933	-0.996419888037104	-1.00802044005422	-0.709202044117141	-1.01394130312755	-0.993906000022137	-0.547688459613057	-1.01071890430896	0.686452106277873	0.830823490743017	1
Merged-chr11-95845712-2	chr11	95845612	95845812	+	852.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001284397)	TTS (NM_001284397)	2467.0	NM_001284397	14710.0	Mm.46299	NM_023121	ENSMUSG00000038811	Gngt2	AV096488	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-84621545-4	chr16	84621427	84621627	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58262.0	NR_040537	78023.0	Mm.243853	NR_040537		4930529L06Rik	-	RIKEN cDNA 4930529L06 gene	ncRNA	5.77126838487383	6.01725825064292	6.23951091663201	5.36358442349973	5.15959804324922	6.07519530128401	6.0972026518154	5.06332477844331	-0.232107502610636	0.454730858511861	0.919120493489568
Merged-chr16-30945116-4	chr16	30944999	30945199	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	136333.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-109251876-2	chr4	109251776	109251976	+	732.3000490000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033226, intron 7 of 7)	intron (NM_001033226, intron 7 of 7)	16244.0	NM_001033226	108802.0	Mm.318248	NM_001033226	ENSMUSG00000028558	Calr4	4933403L16Rik|AU017583	calreticulin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-34548689-1	chr19	34548589	34548789	+	543.0	f1_c57bl6.idr	Intergenic	Intergenic	-2005.0	NM_008332	15958.0	Mm.2036	NM_008332	ENSMUSG00000045932	Ifit2	AV302338|Ifi54|P54	interferon-induced protein with tetratricopeptide repeats 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-86504358-4	chr6	86504268	86504468	+	925.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16141.0	NR_040292	381792.0	Mm.333223	NR_040292	ENSMUSG00000101655	2310040G24Rik	-	RIKEN cDNA 2310040G24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-147871672-4	chr5	147871562	147871762	+	952.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025624, intron 4 of 5)	intron (NM_025624, intron 4 of 5)	11034.0	NM_025624	66537.0	Mm.332855	NM_025624	ENSMUSG00000029649	Pomp	2510048O06Rik|Ump1	proteasome maturation protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-46930031-4	chr13	46929918	46930118	+	997.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010617)	promoter-TSS (NM_010617)	-300.0	NM_010617	16553.0	Mm.342703	NM_010617	ENSMUSG00000021375	Kif13a	4930505I07Rik|mKIAA4109	kinesin family member 13A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-74929552-1	chr15	74929452	74929652	+	1000.0	f1_c57bl6.idr	Intergenic	RMER19C|LTR|ERVK	-25499.0	NM_001164039	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	2.5929542588703	2.55790946769829	3.69663023162077	2.83260656546543	2.94411591824089	2.25371675718634	2.4883175996804	1.43261045643993	-1.1620806339611	0.15468283168894	0.610069793551649
Merged-chr7-19323631-2	chr7	19323531	19323731	+	584.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13586.0	NM_001347586	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-97958132-2	chr16	97958032	97958232	+	853.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175428, intron 1 of 2)	intron (NM_175428, intron 1 of 2)	4490.0	NM_001081685	114565.0	Mm.474489	NM_175428	ENSMUSG00000046962	Zbtb21	5430437K12Rik|B430213I24Rik|Zfp295|Znf295|mKIAA1227	zinc finger and BTB domain containing 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-86594639-2	chr11	86594539	86594739	+	586.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356531, intron 10 of 11)	B1_Mur2|SINE|Alu	-10481.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-60830669-4	chr11	60830560	60830760	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145428)	promoter-TSS (NM_145428)	29.0	NM_145428	216820.0	Mm.21475	NM_145428	ENSMUSG00000042569	Dhrs7b	BC003479|C79874|C80074|PexRAP	dehydrogenase/reductase (SDR family) member 7B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-182516863-4	chr1	182516651	182516851	+	846.68335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009794, intron 1 of 20)	intron (NM_009794, intron 1 of 20)	859.0	NM_009794	12334.0	Mm.19306	NM_009794	ENSMUSG00000026509	Capn2	AI326419|CALP80|Capa-2|Capa2|m-calpain|m-calpin	calpain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-136246082-4	chr5	136245974	136246174	+	963.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1134.0	NM_018825	23921.0	Mm.425294	NM_018825	ENSMUSG00000005057	Sh2b2	Aps	SH2B adaptor protein 2	protein-coding	2.36313722119099	3.18576171279263	3.64454260534467	3.48242500023558	3.04191112968601	2.97507677258398	3.60499517616466	3.10476425094605	-0.0754723718922704	0.904067381265515	0.998431161219273
Merged-chr5-149634505-2	chr5	149634405	149634605	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347534, intron 1 of 16)	intron (NM_001347534, intron 1 of 16)	1810.0	NM_013559	15505.0	Mm.270681	NM_013559	ENSMUSG00000029657	Hsph1	105kDa|AI790491|Hsp105|Hsp110|hsp-E7I|hsp110/105	heat shock 105kDa/110kDa protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-91666817-4	chr12	91666701	91666901	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 4 of 6)	intron (NM_175367, intron 4 of 6)	-76314.0	NM_175335	83602.0	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78984061-2	chr15	78983961	78984161	+	611.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001024716, intron 1 of 13)	intron (NM_001024716, intron 1 of 13)	1005.0	NM_001024716	110253.0	Mm.123714	NM_138579	ENSMUSG00000033088	Triobp	AI428493|EST478828|Tara|mKIAA1662	TRIO and F-actin binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-105310947-8	chr13	105310845	105311045	+	892.2177730000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-16460.0	NM_001360891	71816.0	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-93092400-6	chr5	93092260	93092460	+	895.638916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1056.0	NM_001009818	52398.0	Mm.394184	NM_001009818	ENSMUSG00000058013	Sept11	6230410I01Rik|AW548875|D5Ertd606e	septin 11	protein-coding	-0.265509864055781	-0.387446222284644	0.0358514553721298	-0.393739123274533	-0.261789294775623	-0.386641213617122	0.0447353120274601	-0.393262440366803	0.0410056747755039	0.9863490108657	1
Merged-chr8-36264849-1	chr8	36264749	36264949	+	566.0	f1_c57bl6.idr	Intergenic	Intergenic	-15333.0	NM_001081150	244421.0	Mm.324032	NM_001081150	ENSMUSG00000039633	Lonrf1	-	LON peptidase N-terminal domain and ring finger 1	protein-coding	1.0790221591866	1.99356233445726	1.48431247717159	2.00272186721644	1.08884562361289	0.77439765540624	0.756744071942277	0.741258603224878	-3.67990087136024	0.014184616024394	0.139421373342992
Merged-chr11-86596349-3	chr11	86596210	86596410	+	913.75	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356531, intron 10 of 11)	intron (NM_001356531, intron 10 of 11)	-12152.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44569750-4	chr9	44569659	44569859	+	708.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35133.0	NM_001110826	13209.0	Mm.267061	NM_007841	ENSMUSG00000032097	Ddx6	1110001P04Rik|C430015D01Rik|E230023J21Rik|HLR2|mRCK/P54|p54|rck	DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-11035531-2	chr16	11035431	11035631	+	725.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26633.0	NR_040518	100043147.0	Mm.489001	NR_040518	ENSMUSG00000097056	Gm4262	-	predicted gene 4262	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-113666763-2	chr6	113666663	113666863	+	566.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172161, intron 3 of 12)	RMER4A|LTR|ERVK	28296.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-45406286-4	chr9	45406244	45406444	+	981.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007503, intron 1 of 5)	(TG)n|Simple_repeat|Simple_repeat	267.0	NM_007503	11936.0	Mm.22742	NM_007503	ENSMUSG00000059412	Fxyd2	Atp1g1	FXYD domain-containing ion transport regulator 2	protein-coding	3.16054249166332	3.33810266564874	3.48042520423422	2.50217667459313	2.26479292189216	2.23099219611327	1.44061485723485	2.08150199004091	-2.25555652336841	0.00422720126659856	0.0587314409424015
Merged-chr8-84811064-4	chr8	84810941	84811141	+	997.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10703.0	NM_001081982	18032.0	Mm.9394	NM_010906	ENSMUSG00000001911	Nfix	CTF|NF-I/X|NF1-X|NFI-X	nuclear factor I/X	protein-coding	4.38424893527683	4.01029724197309	3.0970683536709	4.51548707416185	4.62301739661885	3.69969308803593	3.90779760131273	4.0507621310877	0.0208349096358559	0.965932629983945	0.998431161219273
Merged-chr12-99966480-1	chr12	99966380	99966580	+	622.0	f0_balb.idr	intron (NM_001164426, intron 2 of 2)	intron (NM_001164426, intron 2 of 2)	1981.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56587576-2	chr17	56587476	56587676	+	723.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163300, intron 1 of 20)	intron (NM_001163300, intron 1 of 20)	2594.0	NM_001163300	224903.0	Mm.255066	NM_001163300	ENSMUSG00000071054	Safb	3110021E02Rik|5330423C17Rik|AU018122|D18386|E130307D12|HAP|HET|SAF-B1|SAFB1	scaffold attachment factor B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-90132640-3	chr15	90132556	90132756	+	690.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-91655.0	NM_001033441	380959.0	Mm.17853	NM_001033441	ENSMUSG00000075470	Alg10b	AA469671|AU045404|AW123895|C85569|Deaf1|Gm917|nse5	asparagine-linked glycosylation 10B (alpha-1,2-glucosyltransferase)	protein-coding	2.26298505977677	1.37158230537295	2.54934199459566	2.04553167196525	1.82615517524825	2.55850730907603	2.11952037755029	2.57615183225633	0.410853050647483	0.656757060123945	0.988505467120973
Merged-chr9-83551705-2	chr9	83551605	83551805	+	813.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172507, intron 1 of 3)	intron (NM_172507, intron 1 of 3)	3367.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-28777983-4	chr19	28777904	28778104	+	969.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-57162.0	NM_009199	20510.0	Mm.246670	NM_009199	ENSMUSG00000024935	Slc1a1	D130048G10Rik|EAAC1|EAAC2|EAAT3|MEAAC1	solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34636541-1	chr17	34636441	34636641	+	753.5	f1_balb.idr	Intergenic	Intergenic	6855.0	NM_030890	260297.0	Mm.390965	NM_030890	ENSMUSG00000015476	Prrt1	Bat-4|Bat4|D17H6S54E|DSPD1|G5b|NG5|ORF31|SynDIG4	proline-rich transmembrane protein 1	protein-coding	-0.509058737755104	-0.498244589043428	-0.501800063548982	-0.34565131344898	0.123053197168655	-0.497441462871492	-0.501016921602207	-0.206165735295389	2.53128855636628	0.330036929003313	1
Merged-chr10-30751830-4	chr10	30751747	30751947	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358842, intron 2 of 14)	L2|LINE|L2	51479.0	NM_001358841	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-22121864-2	chr16	22121764	22121964	+	572.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_183029, intron 2 of 15)	intron (NM_183029, intron 2 of 15)	41435.0	NM_183029	319765.0	Mm.489442	NM_183029	ENSMUSG00000033581	Igf2bp2	C330012H03Rik|IMP-2|Imp2|Neilsen	insulin-like growth factor 2 mRNA binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81428603-2	chr10	81428503	81428703	+	838.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1430.0	NM_026756	18029.0	Mm.426936	NM_008688	ENSMUSG00000055053	Nfic	1110019L22Rik|1500041O16Rik|AA589446|AI746521|NF1-C	nuclear factor I/C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-117418971-2	chr5	117418871	117419071	+	572.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001312914, intron 1 of 19)	intron (NM_001312914, intron 1 of 19)	4969.0	NM_001312914	333050.0	Mm.437947	NM_001034873	ENSMUSG00000061578	Ksr2	-	kinase suppressor of ras 2	protein-coding	-0.545552962809617	-0.0206700593230789	-0.537104491414453	-0.540277050889754	-0.544767401897737	0.115101523067047	-0.536198306479445	-0.539722514297988	0.464434819266072	0.867390803141146	1
Merged-chr12-81859899-4	chr12	81859794	81859994	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018814)	promoter-TSS (NM_018814)	-136.0	NM_018814	54604.0	Mm.86584	NM_018814	ENSMUSG00000021140	Pcnx	2900024E21Rik|3526401J03Rik|AF096286|AI327143|AI413187|Pcnx1|Pcnxl1	pecanex homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-157201108-4	chr2	157200994	157201194	+	881.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011249, intron 1 of 21)	Lx9|LINE|L1	3440.0	NM_011249	19650.0	Mm.244671	NM_011249	ENSMUSG00000027641	Rbl1	AW547426|PRB1|p107	RB transcriptional corepressor like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-147520250-2	chr4	147520150	147520350	+	739.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33027.0	NM_001014397	433804.0	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154	zinc finger protein 985	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-64011137-2	chr9	64011037	64011237	+	958.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008542, intron 2 of 3)	intron (NM_008542, intron 2 of 3)	10922.0	NM_008542	17130.0	Mm.325757	NM_008542	ENSMUSG00000036867	Smad6	Madh6|b2b390Clo	SMAD family member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-108693470-2	chr8	108693370	108693570	+	879.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21174.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-57342465-6	chr17	57342351	57342551	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-16235.0	NM_001355723	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-67234266-2	chr17	67234166	67234366	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	L1M2|LINE|L1	120193.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	-0.413270832553205	0.248879758316469	-0.403519686790488	-0.4071766335812	-0.41236239857827	0.260274020124072	-0.402476173372258	-0.406537021983025	0.0394809277679939	0.98817139586833	1
Merged-chr16-92385422-2	chr16	92385322	92385522	+	956.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2739.0	NR_105054	101056236.0	Mm.149108	NR_105054		Gm29805	-	predicted gene, 29805	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-80200660-4	chr18	80200578	80200778	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199197)	promoter-TSS (NM_199197)	-59.0	NM_199197	68731.0	Mm.186936	NM_199197	ENSMUSG00000024570	Rbfa	1110032A13Rik|AI595940	ribosome binding factor A	protein-coding	3.14393316110928	3.61084714894938	2.60708998587669	3.22899874358967	3.68746838630643	3.98542215328738	2.45612471076221	3.7497945282069	0.616491399509616	0.314527345854021	0.816464538199166
Merged-chr3-101596922-3	chr3	101596817	101597017	+	829.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144900, intron 1 of 22)	intron (NM_144900, intron 1 of 22)	7790.0	NM_144900	11928.0	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-34171328-2	chr10	34171228	34171428	+	790.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_172508, intron 2 of 5)	intron (NM_172508, intron 2 of 5)	36223.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-116107683-2	chr6	116107583	116107783	+	665.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177412, intron 3 of 5)	intron (NM_177412, intron 3 of 5)	85691.0	NM_177412	330401.0	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-79639276-2	chr12	79639176	79639376	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	285457.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85478416-3	chr12	85478310	85478510	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	4520.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118353067-1	chr11	118352967	118353167	+	542.0	f1_balb.idr	intron (NM_011594, intron 1 of 4)	intron (NM_011594, intron 1 of 4)	2344.0	NM_011594	21858.0	Mm.206505	NM_011594	ENSMUSG00000017466	Timp2	D11Bwg1104e|Timp-2	tissue inhibitor of metalloproteinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-108560399-4	chr9	108560312	108560512	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011830)	promoter-TSS (NM_011830)	-89.0	NM_011830	23918.0	Mm.6065	NM_011830	ENSMUSG00000062867	Impdh2	IMPD	inosine monophosphate dehydrogenase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-77458430-3	chr11	77458325	77458525	+	708.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001291190, exon 14 of 14)	3' UTR (NM_001291190, exon 14 of 14)	-5488.0	NM_139129	216961.0	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-72736596-2	chr8	72736496	72736696	+	694.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113248, intron 5 of 6)	B1_Mus2|SINE|Alu	13326.0	NM_009188	20467.0	Mm.2137	NM_009188	ENSMUSG00000031622	Sin3b	2810430C10Rik	transcriptional regulator, SIN3B (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115512470-2	chr5	115512368	115512568	+	961.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011223, intron 1 of 10)	intron (NM_011223, intron 1 of 10)	5792.0	NM_133915	19303.0	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	-1.50811478453619	-0.99851579554048	-1.48484165847197	-1.49312904261012	-1.50577282675516	-1.47256636097272	-1.48255773576353	-1.49164560481169	-2.24133836997777	0.518237887813808	1
Merged-chr1-171164522-1	chr1	171164422	171164622	+	629.0	f1_balb.idr	Intergenic	B1_Mus2|SINE|Alu	9004.0	NM_001315500	17528.0	Mm.9986	NM_008623	ENSMUSG00000056569	Mpz	Mpp|P-zero|P0	myelin protein zero	protein-coding	0.900079183127092	0.493124259367363	0.482326059025305	0.967052116661592	1.12315840056331	0.495536612361677	0.484721520515628	1.62096334770327	1.37194876536477	0.421897823786433	0.900322118218157
Merged-chr2-24934838-2	chr2	24934715	24934915	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_178408, intron 1 of 7)	CpG	466.0	NR_027876	215705.0	Mm.45275	NM_178408	ENSMUSG00000026972	Arrdc1	AI957342|BC004091	arrestin domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24645238-4	chr17	24645218	24645418	+	752.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023449)	promoter-TSS (NM_023449)	-361.0	NM_023449	65962.0	Mm.21587	NM_023055	ENSMUSG00000002504	Slc9a3r2	0610011L07Rik|1200011K07Rik|2010007A20Rik|E3karp|NHERF-2|Nherf2|Octs2|Sip-1|Sip1|Sryip1|Tka-1	solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-106385470-1	chr4	106385370	106385570	+	807.0	f0_balb.idr	exon (NM_183225, exon 32 of 68)	exon (NM_183225, exon 32 of 68)	69257.0	NM_183225	329908.0	Mm.234544	NM_183225	ENSMUSG00000028514	Usp24	2700066K03Rik|2810030C21Rik|AI414051|B130021E18|C79851	ubiquitin specific peptidase 24	protein-coding	0.717401644323916	0.765220070954679	1.44142873081512	1.39301762681836	1.20260793251784	0.768615649727756	2.02700365726506	1.2723056609312	1.01762652899366	0.477427250837882	0.927980290875356
Merged-chr13-94794282-4	chr13	94794163	94794363	+	942.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009321, intron 1 of 3)	intron (NM_009321, intron 1 of 3)	5320.0	NM_009321	21371.0	Mm.379025	NM_009321	ENSMUSG00000042043	Tbca	Tbca13	tubulin cofactor A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21162776-2	chr9	21162676	21162876	+	794.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2938.0	NM_183408	18577.0	Mm.191749	NM_019798	ENSMUSG00000032177	Pde4a	D9Ertd60e|Dpde2	phosphodiesterase 4A, cAMP specific	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-6102932-1	chr9	6102832	6103032	+	553.0	f1_c57bl6.idr	Intergenic	Intergenic	-65554.0	NM_001357398	71785.0	Mm.390122	NM_027924	ENSMUSG00000032006	Pdgfd	1110003I09Rik	platelet-derived growth factor, D polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-31402499-2	chr6	31402399	31402599	+	658.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013791, intron 1 of 17)	MT-int|LTR|ERVL-MaLR	3671.0	NM_013791	27418.0	Mm.238038	NM_013791	ENSMUSG00000025609	Mkln1	A130067F06Rik|AU015903|BB154892	muskelin 1, intracellular mediator containing kelch motifs	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124669106-2	chr6	124669006	124669206	+	750.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_149320, intron 1 of 11)	ID_B1|SINE|B4	6002.0	NM_145130	14792.0	Mm.273915	NM_145130	ENSMUSG00000004270	Lpcat3	C3f|Grcc3f|Lpcat|Lpeat|Lplat5|Lpsat|Mboat5|Moact5|Oact5|PTG	lysophosphatidylcholine acyltransferase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80297368-2	chr10	80297268	80297468	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 1 of 4)	intron (NR_038088, intron 1 of 4)	-4452.0	NM_011789	23805.0	Mm.57247	NM_011789	ENSMUSG00000020135	Apc2	AI852447|APCL|R75424	adenomatosis polyposis coli 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-66221917-2	chr14	66221817	66222017	+	587.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 1 of 30)	B4|SINE|B4	-8093.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-4302857-4	chr18	4302756	4302956	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50097.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171000196-2	chr1	171000096	171000296	+	704.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18730.0	NM_144559	246256.0	Mm.251254	NM_144559	ENSMUSG00000059089	Fcgr4	4833442P21Rik|CD16-2|FcgRIV|FcgammaRIV|Fcgr3a|Fcrl3	Fc receptor, IgG, low affinity IV	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-113629374-2	chr6	113629274	113629474	+	746.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009507, intron 2 of 2)	intron (NM_009507, intron 2 of 2)	5353.0	NM_009507	22346.0	Mm.29407	NM_009507	ENSMUSG00000033933	Vhl	Vhlh	von Hippel-Lindau tumor suppressor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-53453389-3	chr19	53453296	53453496	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028427, intron 2 of 9)	intron (NR_028427, intron 2 of 9)	11400.0	NR_028427	381232.0	Mm.248624	NR_028427	ENSMUSG00000097636	Mirt1	4833407H14Rik|5430437C04Rik|5830416P10Rik|Gm10758	myocardial infarction associated transcript 1	ncRNA	3.32458880818657	4.30921708986429	3.68443418220885	3.42344873906025	3.74760454998822	3.13161177645929	3.14644993625222	4.27475372322577	-0.0922800727941763	0.866946995760233	0.998431161219273
Merged-chr17-79613821-2	chr17	79613779	79613979	+	996.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	-1021.0	NM_201361	381110.0	Mm.209801	NM_201361	ENSMUSG00000036368	Rmdn2	AW061290|Fam82a1|RMD-2|mRMD-2	regulator of microtubule dynamics 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-30213492-2	chr17	30213392	30213592	+	683.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA7|LINE|L1	182688.0	NR_030688	623169.0	Mm.440508	NR_030688		Gm6402	EG623169	ribosomal protein S17 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-5702510-4	chr2	5702424	5702624	+	996.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290374, intron 1 of 9)	GA-rich|Low_complexity|Low_complexity	12238.0	NM_001290374	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-70580840-1	chr18	70580740	70580940	+	635.0	f0_balb.idr	intron (NM_010773, intron 2 of 6)	intron (NM_010773, intron 2 of 6)	12548.0	NM_010773	17191.0	Mm.322	NM_010773	ENSMUSG00000024513	Mbd2	MBD2a	methyl-CpG binding domain protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-88304510-3	chr10	88304407	88304607	+	810.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52568.0	NM_027878	71712.0	Mm.35450	NM_027878	ENSMUSG00000020057	Dram1	1200002N14Rik|Dram	DNA-damage regulated autophagy modulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-66438884-1	chr18	66438784	66438984	+	544.0	f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-19720.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28375746-2	chr17	28375646	28375846	+	952.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10530.0	NM_021478	22157.0	Mm.42102	NM_021478	ENSMUSG00000037446	Tulp1	Tulp1l	tubby like protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-118818146-4	chr10	118818054	118818254	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50749.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-98619336-4	chr10	98619232	98619432	+	979.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-267465.0	NR_045179	667438.0	Mm.414522	NR_045179	ENSMUSG00000112896	Gm8633	EG667438	predicted gene 8633	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-42354351-5	chr6	42354245	42354445	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289618, intron 4 of 9)	intron (NM_001289618, intron 4 of 9)	4517.0	NM_001289618	22793.0	Mm.282303	NM_011777	ENSMUSG00000029860	Zyx	9530098H06Rik|R75157	zyxin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-59228217-4	chr11	59228113	59228313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001130408)	promoter-TSS (NM_001130408)	-51.0	NM_001130408	11840.0	Mm.371546	NM_007476	ENSMUSG00000048076	Arf1	-	ADP-ribosylation factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-7869283-4	chr17	7869192	7869392	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56708.0	NM_145968	72536.0	Mm.119680	NM_145968	ENSMUSG00000033450	Tagap	2610315E15Rik|TRD|Tcd-1|Tcd1|Tcd1a|tcs-1|tcs1	T cell activation Rho GTPase activating protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-93786025-1	chr16	93785925	93786125	+	546.0	f1_c57bl6.idr	intron (NM_001357118, intron 25 of 35)	intron (NM_001357118, intron 25 of 35)	8876.0	NR_151466	102633000.0	Mm.443436	NR_151466		2310043M15Rik	-	RIKEN cDNA 2310043M15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-45102826-3	chr9	45102711	45102911	+	938.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005421, intron 8 of 10)	intron (NM_001005421, intron 8 of 10)	-15065.0	NM_001014761	72821.0	Mm.229373	NM_001014761	ENSMUSG00000070304	Scn2b	2810451E09Rik|AI840361|Gm183	sodium channel, voltage-gated, type II, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-137785261-3	chr5	137785148	137785348	+	926.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_144913, exon 1 of 4)	exon (NM_144913, exon 1 of 4)	1453.0	NM_144913	231803.0	Mm.61193	NM_144913	ENSMUSG00000029726	Mepce	Bcdin3|D5Wsu46e	methylphosphate capping enzyme	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-146750022-4	chr5	146749940	146750140	+	989.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011669, intron 6 of 8)	intron (NM_011669, intron 6 of 8)	44916.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-81061079-2	chr7	81060960	81061160	+	627.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_054085, intron 1 of 13)	B3A|SINE|B2	3460.0	NM_054085	116904.0	Mm.475768	NM_054085	ENSMUSG00000038763	Alpk3	AW319487|D330016D04|MAK|Midori|mKIAA1330	alpha-kinase 3	protein-coding	-0.177733621508433	-0.805752184127899	-0.808838537208662	-0.811215655782965	-0.543043920694761	-0.803068160812789	-0.808158328395888	-0.810800640862464	-1.36685470224649	0.652602213394196	1
Merged-chr8-22807389-5	chr8	22807257	22807457	+	933.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1703.0	NM_001122820	64933.0	Mm.390023	NM_029505	ENSMUSG00000031539	Ap3m2	5830445E16Rik|AP-3B	adaptor-related protein complex 3, mu 2 subunit	protein-coding	1.25327365506636	1.41009740451351	0.855455230562449	1.54410344820479	1.55998956059007	1.26870006440067	1.49674310820039	0.847135341141808	0.130802377053054	0.921695718716897	0.998431161219273
Merged-chr10-81346925-2	chr10	81346825	81347025	+	634.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_010440, exon 7 of 9)	exon (NM_010440, exon 7 of 9)	3501.0	NM_001163165	15353.0	Mm.38474	NM_010440	ENSMUSG00000020232	Hmg20b	AW610687|BRAF35|Hmgx2|Hmgxb2|Smarce1r	high mobility group 20B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141439208-2	chr7	141439108	141439308	+	552.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001360523, exon 15 of 16)	exon (NM_001360523, exon 15 of 16)	-1334.0	NM_001360724	68267.0	Mm.33729	NM_026646	ENSMUSG00000019082	Slc25a22	1300006L01Rik|AI060884|Gc1	solute carrier family 25 (mitochondrial carrier, glutamate), member 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-41825096-1	chr8	41824996	41825196	+	751.0	f0_balb.idr	Intergenic	Intergenic	-2171.0	NR_045497	69966.0	Mm.416903	NR_045497	ENSMUSG00000102046	2810404M03Rik	-	RIKEN cDNA 2810404M03 gene	ncRNA	2.09086061151714	2.21057320095207	1.34140209203554	2.3212392106317	3.0055112459642	1.87922277241407	2.15234400393456	2.78221242558153	1.13135096427849	0.214626662527253	0.705375464847146
Merged-chr1-191230651-4	chr1	191230554	191230754	+	922.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6200.0	NR_151547	100504360.0	Mm.16927	NM_001033188		D730003I15Rik	AU020850	RIKEN cDNA D730003I15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-122983358-4	chr14	122983250	122983450	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360598)	promoter-TSS (NM_001360598)	-67.0	NR_153663	70551.0	Mm.271988	NM_028651	ENSMUSG00000041594	Tmtc4	4930403J22Rik|5730419O14Rik	transmembrane and tetratricopeptide repeat containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-161295743-3	chr1	161295616	161295816	+	903.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44506.0	NM_001303408	11758.0	Mm.186185	NM_007453	ENSMUSG00000026701	Prdx6	1-Cys Prx|1-cysPrx|9430088D19Rik|AA690119|Aop2|Brp-12|CP-3|GPx|Ltw-4|Ltw4|Lvtw-4|NSGPx|ORF06|Prdx5|aiPLA2	peroxiredoxin 6	protein-coding	1.73389985553635	1.42188467567567	4.02823544544498	3.7223353518684	1.75380071036135	1.43585870166752	4.05823209738528	3.74132224596246	0.0355950736469217	0.983420150357757	0.998431161219273
Merged-chr9-48548451-4	chr9	48548353	48548553	+	919.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC2|LINE|L1	53110.0	NM_001004191	434402.0	Mm.386950	NM_001004191	ENSMUSG00000042293	Gm5617	EG434402	predicted gene 5617	protein-coding	0.498163450449778	1.7922784770736	0.330774208555759	1.00382462525421	0.80987976676184	0.346109488783404	0.333568206469026	0.322620472812117	-2.72591016029797	0.125036569840465	0.553673410143865
Merged-chr1-85295218-1	chr1	85295118	85295318	+	1000.0	f1_balb.idr	Intergenic	Lx5|LINE|L1	-24652.0	NM_001037909	620078.0	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik	RIKEN cDNA C130026I21 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34296203-4	chr17	34296105	34296305	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8434.0	NM_010378	14960.0	Mm.235338	NM_010378	ENSMUSG00000036594	H2-Aa	Aalpha|H-2Aa|H2Aa|I-Aalpha|IAalpha|Ia-1|Ia1	histocompatibility 2, class II antigen A, alpha	protein-coding	7.57841593294188	7.69942975072248	7.49983309025858	7.48070597823731	7.79447009236659	7.83361244196597	7.98206920676029	7.41900610368157	0.211815545468149	0.16107250497683	0.621664566173712
Merged-chr10-87740716-1	chr10	87740616	87740816	+	661.0	f0_balb.idr	Intergenic	Intergenic	-117549.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	-1.00611288434222	-1.24342942655438	-0.940807701217955	-1.26193839365205	-1.26998517735704	-1.24122732662225	-1.25129080164274	-1.26044425099987	-2.31507841253797	0.488741846047341	1
Merged-chr10-117861073-4	chr10	117860980	117861180	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15106.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-113130311-4	chr12	113130195	113130395	+	992.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346696, intron 11 of 19)	intron (NM_001346696, intron 11 of 19)	-9941.0	NM_024223	68337.0	Mm.133825	NM_024223	ENSMUSG00000006356	Crip2	0610010I23Rik|AW743261|C77570|CRP2|CRP4|Crp|ESP1|Hlp	cysteine rich protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-123354541-4	chr7	123354425	123354625	+	969.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316713, intron 1 of 19)	intron (NM_001316713, intron 1 of 19)	15390.0	NM_001122643	70497.0	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-148687939-2	chr6	148687839	148688039	+	770.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9939.0	NR_131024	75831.0	Mm.159595	NR_131024	ENSMUSG00000084909	4930528G23Rik	-	RIKEN cDNA 4930528G23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-33931329-2	chr13	33931229	33931429	+	871.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009254, intron 2 of 6)	intron (NM_009254, intron 2 of 6)	-4703.0	NR_040707	68808.0	Mm.443347	NR_040707	ENSMUSG00000085457	1110046J04Rik	-	RIKEN cDNA 1110046J04 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-120868985-3	chr4	120868882	120869082	+	764.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_182929, intron 1 of 7)	L2b|LINE|L2	14183.0	NM_182929	242662.0	Mm.192502	NM_182929	ENSMUSG00000032890	Rims3	A730060M23Rik|Nim3|Rim3|mKIAA0237	regulating synaptic membrane exocytosis 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-24029267-2	chr5	24029167	24029367	+	867.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_053090, intron 1 of 10)	intron (NM_053090, intron 1 of 10)	1045.0	NM_001310471	84652.0	Mm.304976	NM_053090	ENSMUSG00000028995	Fam126a	AB030242|Drctnnb1a	family with sequence similarity 126, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-84468817-2	chr12	84468717	84468917	+	559.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_173756, intron 5 of 5)	intron (NM_173756, intron 5 of 5)	17309.0	NM_173756	217708.0	Mm.311904	NM_173756	ENSMUSG00000085793	Lin52	5830457H20Rik	lin-52 homolog (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-132599899-2	chr2	132599799	132599999	+	790.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_033469, intron 1 of 3)	B3|SINE|B2	1703.0	NR_033469	767814.0	Mm.371752	NR_033468	ENSMUSG00000074783	AU019990	-	expressed sequence AU019990	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-88681153-4	chr10	88681036	88681236	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011461, intron 1 of 5)	B4A|SINE|B4	1887.0	NM_011461	20728.0	Mm.21642	NM_011461	ENSMUSG00000004359	Spic	AU019198|C76795|Prf|Spi-C	Spi-C transcription factor (Spi-1/PU.1 related)	protein-coding	5.56585085300505	4.91476724746335	5.1888660307825	5.24609667874198	4.69186288004899	4.15819255964207	5.4941033062778	4.90748851607716	-0.420974397642866	0.231552069096057	0.726000450787758
Merged-chr17-35262986-4	chr17	35262883	35263083	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010380)	promoter-TSS (NM_010380)	-111.0	NM_010380	14964.0	Mm.439675	NM_010380	ENSMUSG00000073411	H2-D1	H-2D|H2-D	histocompatibility 2, D region locus 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-127135938-4	chr1	127135830	127136030	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69056.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	4.55078275193976	3.95426007907448	4.22331925192605	2.87045491732344	4.51476769076574	4.33221741093972	4.77060885951793	3.73123003396929	0.46435655604318	0.341758709386779	0.842759215970827
Merged-chr17-45663318-4	chr17	45663007	45663207	+	872.7261960000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198167, intron 19 of 23)	intron (NM_198167, intron 19 of 23)	-3798.0	NM_001013767	268958.0	Mm.426026	NM_001013767	ENSMUSG00000058626	Capn11	-	calpain 11	protein-coding	-0.00874760334356776	-0.127994611922143	-0.132209217623298	0.146975604329203	0.392095980887594	-0.127041662943044	-0.131281467126313	0.266328591153642	1.36284874319067	0.542468415959769	1
Merged-chr7-121392609-2	chr7	121392509	121392709	+	636.5	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001081327, exon 1 of 2)	5' UTR (NM_001081327, exon 1 of 2)	313.0	NM_001081327	195646.0	Mm.247449	NM_177575	ENSMUSG00000046321	Hs3st2	6430516N12Rik|A830061E14Rik|AW491345	heparan sulfate (glucosamine) 3-O-sulfotransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-32087811-4	chr16	32087712	32087912	+	949.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024464, intron 3 of 5)	intron (NM_024464, intron 3 of 5)	-8470.0	NM_177326	224105.0	Mm.234204	NM_177326	ENSMUSG00000022781	Pak2	5330420P17Rik|A130002K10Rik|AI836325|D16Ertd269e|PAK-2|mKIAA4182	p21 (RAC1) activated kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-17402996-3	chr14	17402896	17403096	+	840.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-257964.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-44691745-4	chr10	44691630	44691830	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-232982.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-104966456-2	chr3	104966356	104966556	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4747.0	NM_009520	22414.0	Mm.10740	NM_009520	ENSMUSG00000027840	Wnt2b	Wnt13	wingless-type MMTV integration site family, member 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-90492279-4	chr11	90492185	90492385	+	921.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011505, intron 17 of 17)	intron (NM_011505, intron 17 of 17)	-101368.0	NM_172563	217082.0	Mm.158903	NM_172563	ENSMUSG00000003949	Hlf	E230015K02Rik	hepatic leukemia factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-91741116-4	chr6	91741001	91741201	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009320, intron 8 of 14)	intron (NM_009320, intron 8 of 14)	57034.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-57533293-2	chr14	57533193	57533393	+	664.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_145837, intron 2 of 2)	intron (NM_145837, intron 2 of 2)	8464.0	NM_145837	239114.0	Mm.390726	NM_145837	ENSMUSG00000050222	Il17d	AI462269|IL-17D	interleukin 17D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-122602898-5	chr6	122602840	122603040	+	914.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031159)	promoter-TSS (NM_031159)	-496.0	NM_001134391	11810.0	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3781633-4	chr12	3781525	3781725	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_149729, exon 19 of 19)	non-coding (NR_149729, exon 19 of 19)	-25355.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-4647500-4	chr7	4647429	4647629	+	885.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172894, intron 1 of 23)	intron (NM_172894, intron 1 of 23)	11421.0	NM_172894	243819.0	Mm.258670	NM_172894	ENSMUSG00000052296	Ppp6r1	2010309P17Rik|AI836219|B430201G11Rik|D030074N20Rik|Pp6r1|Saps1|mKIAA1115	protein phosphatase 6, regulatory subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-110464591-1	chr11	110464491	110464691	+	540.0	f0_c57.idr	intron (NM_001356352, intron 1 of 11)	intron (NM_001356352, intron 1 of 11)	-13924.0	NM_001356347	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	2.69410309959146	3.09854780471946	2.91779431467251	2.5673348580375	2.35467404603769	2.2066081930118	1.74037360864107	2.22182520588228	-1.46993016546705	0.0592628173876804	0.359957112563646
Merged-chr18-78309916-2	chr18	78309816	78310016	+	561.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_207651, intron 3 of 21)	intron (NM_207651, intron 3 of 21)	-103476.0	NM_001110274	27411.0	Mm.44158	NM_030683	ENSMUSG00000024552	Slc14a2	UT-A1|UT-A3	solute carrier family 14 (urea transporter), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-115017891-4	chr14	115017780	115017980	+	909.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25791.0	NR_029785	723905.0		NR_029785	ENSMUSG00000065508	Mir17	Mirn17|mir-17|mmu-mir-17	microRNA 17	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-104442427-4	chr8	104442323	104442523	+	904.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013380, intron 2 of 12)	intron (NM_001013380, intron 2 of 12)	624.0	NM_001013380	234663.0	Mm.289583	NM_001013380	ENSMUSG00000035770	Dync1li2	AA409702|C920003I06|Dncli2|Dnclic2|LIC2	dynein, cytoplasmic 1 light intermediate chain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129130307-4	chr4	129130221	129130421	+	726.229187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6678.0	NM_027402	384061.0	Mm.44075	NM_027402	ENSMUSG00000001334	Fndc5	1500001L03Rik|AI836596|C87088|PeP|Pxp	fibronectin type III domain containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-32274429-2	chr19	32274329	32274529	+	594.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001168525, intron 2 of 9)	intron (NM_001168525, intron 2 of 9)	-63416.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25108486-2	chr7	25108386	25108586	+	751.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163556, intron 5 of 13)	B1F2|SINE|Alu	-11311.0	NR_105855	102465968.0		NR_105855	ENSMUSG00000098441	Mir6537	Gm27808|mmu-mir-6537	microRNA 6537	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-39362260-4	chr15	39362136	39362336	+	725.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053271, intron 5 of 26)	intron (NM_053271, intron 5 of 26)	163950.0	NM_053271	116838.0	Mm.309296	NM_053271	ENSMUSG00000037386	Rims2	2810036I15Rik|AW048769|RIM2|Rab3ip2|Rim2(+40A)|Rim2(+44A)|Rim2(+4A)|Serg2|Syt3-rs|mKIAA0751	regulating synaptic membrane exocytosis 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-177940660-2	chr1	177940560	177940760	+	552.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50738.0	NR_155538	545391.0	Mm.442974	NM_001034899	ENSMUSG00000091476	Gm16432	EG545391|EG666250	predicted gene 16432	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-129532730-4	chr6	129532649	129532849	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020590)	promoter-TSS (NM_020590)	-443.0	NM_020590	57436.0	Mm.14638	NM_020590	ENSMUSG00000030161	Gabarapl1	3110025G09Rik|9130422N19Rik|AI196471|Apg8l|Atg8l|GECI|MNCb-0091	gamma-aminobutyric acid (GABA) A receptor-associated protein-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71257341-3	chr17	71257237	71257437	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357338, intron 4 of 7)	intron (NM_001357338, intron 4 of 7)	52683.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	1.36573570483159	3.21037282000519	3.08952659764145	1.48243529426232	3.80883244282137	4.84915805134775	3.59929708542994	4.54622215944449	2.59954384641746	0.0313554407887555	0.243970543828462
Merged-chr18-64936226-3	chr18	64936092	64936292	+	878.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114386, intron 1 of 30)	intron (NM_001114386, intron 1 of 30)	48436.0	NM_001114386	83814.0	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-88906941-4	chr6	88906851	88907051	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011906, intron 2 of 11)	intron (NM_011906, intron 2 of 11)	4700.0	NM_011906	24100.0	Mm.284480	NM_011906	ENSMUSG00000002871	Tpra1	40kDa|Gpr175|Tpra40	transmembrane protein, adipocyte asscociated 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70540106-4	chr11	70540035	70540235	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008876)	promoter-TSS (NM_008876)	71.0	NM_001361935	18806.0	Mm.260177	NM_008876	ENSMUSG00000020828	Pld2	PLD1C	phospholipase D2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-46437479-3	chr11	46437384	46437584	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001104556, intron 1 of 1)	CpG	523.0	NM_025426	66213.0	Mm.24159	NM_025426	ENSMUSG00000020397	Med7	1110063B05Rik|Crsp33|Crsp9	mediator complex subunit 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-22917430-3	chr5	22917379	22917579	+	963.9166869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359998, intron 1 of 3)	intron (NM_001359998, intron 1 of 3)	-170595.0	NR_027362	330052.0	Mm.459265	NR_027362	ENSMUSG00000105076	A930003O13Rik	-	RIKEN cDNA A930003O13 gene	ncRNA	5.32935850358766	5.04339232206329	5.28105001191889	5.23638145864804	3.64890659707051	3.13270786959447	4.37198069136502	2.89448388562295	-2.01211051205175	1.48880592169854e-06	9.08272548230802e-05
Merged-chr11-54617835-4	chr11	54617735	54617935	+	768.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252494, intron 7 of 28)	MLT1A0|LTR|ERVL-MaLR	21689.0	NM_001252497	192786.0	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-51435567-2	chr14	51435467	51435667	+	593.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16395.0	NR_104384	22301.0	Mm.482572	NM_009486	ENSMUSG00000070448	Vmn2r89	V2r10|V2r11	vomeronasal 2, receptor 89	protein-coding	0.453239896357337	0.0803868733051052	0.0740784211301361	0.0691947247538318	0.656483698103186	0.0818056882265936	0.877049248010182	0.0700489713728234	2.07519543171211	0.342407228223132	1
Merged-chr3-89349265-3	chr3	89349188	89349388	+	855.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_029974)	TTS (NM_029974)	740.0	NM_001037722	11490.0	Mm.274049	NM_009614	ENSMUSG00000028041	Adam15	AD56|MDC15	a disintegrin and metallopeptidase domain 15 (metargidin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-18514650-2	chr6	18514550	18514750	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_149735, intron 1 of 22)	CpG	219.0	NM_080285	30785.0	Mm.224189	NM_080285	ENSMUSG00000000416	Cttnbp2	3010022N24Rik|4732477G22Rik|6430526E05|9130022E09Rik|AU040881|Cortbp2|ORF4|mKIAA1758	cortactin binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-61273593-2	chr10	61273493	61273693	+	908.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081127)	promoter-TSS (NM_001081127)	-155.0	NM_001081127	237360.0	Mm.333252	NM_001081127	ENSMUSG00000059901	Adamts14	Adamts-14|TS14	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-76588248-4	chr11	76588129	76588329	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10490.0	NM_198894	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-36015909-3	chr17	36015813	36016013	+	839.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008207, intron 2 of 5)	intron (NM_008207, intron 2 of 5)	4647.0	NM_008207	15042.0	Mm.439654	NM_008207	ENSMUSG00000053835	H2-T24	H-2T24	histocompatibility 2, T region locus 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-64038323-2	chr13	64038223	64038423	+	797.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50878.0	NM_008291	15487.0	Mm.5109	NM_008291	ENSMUSG00000033122	Hsd17b3	-	hydroxysteroid (17-beta) dehydrogenase 3	protein-coding	2.27930258669879	1.91225931337175	1.1468997104775	3.05758896174502	2.30031471318426	1.19080209145521	1.15501101229145	2.95961410171482	-0.297662787956146	0.795477564244574	0.998431161219273
Merged-chr17-67345380-4	chr17	67345277	67345477	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	MTD|LTR|ERVL-MaLR	9082.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-10953088-2	chr6	10952988	10953188	+	565.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	21290.0	NR_033776	57866.0	Mm.4397	NR_033776		AA545190	-	EST AA545190	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-144008152-2	chr2	144008052	144008252	+	743.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_133626, intron 1 of 2)	intron (NM_133626, intron 1 of 2)	3111.0	NM_133626	81910.0	Mm.13705	NM_024281	ENSMUSG00000027422	Rrbp1	1700087N07Rik|5730465C04Rik|ES/130|mKIAA1398|mRRp0|mRRp1.8|mRRp10|mRRp15a|mRRp15b|mRRp16.8|mRRp2|mRRp41|mRRp47|mRRp5.4|p180	ribosome binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-177667647-2	chr1	177667547	177667747	+	576.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24704.0	NR_037994	75589.0	Mm.86666	NR_037994	ENSMUSG00000101746	2310043L19Rik	-	RIKEN cDNA 2310043L19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-13841568-4	chr8	13841468	13841668	+	974.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3479.0	NM_153093	231201.0	Mm.423959	NM_153093	ENSMUSG00000057116	AF366264	Susp4	cDNA sequence AF366264	protein-coding	1.11118349025092	2.43835440755761	0.938576603101688	0.915262542304661	1.62996260443364	0.973826668246847	2.4515664005444	2.58416741783554	1.26357626534554	0.319701126465896	0.821951596143819
Merged-chr6-134701000-4	chr6	134700910	134701110	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170479, intron 3 of 3)	intron (NM_001170479, intron 3 of 3)	60070.0	NM_026371	67774.0	Mm.41892	NM_026371	ENSMUSG00000042992	Borcs5	5830457J20Rik|AW124643|Loh12cr1	BLOC-1 related complex subunit 5	protein-coding	5.65316922552729	6.09844853975016	6.42955172119235	5.37588859056714	5.52417724001189	6.23776489256342	6.25873569900178	5.31019943173037	-0.0608523562815107	0.840868614278172	0.998431161219273
Merged-chr12-100778963-4	chr12	100778850	100779050	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361020)	promoter-TSS (NM_001361020)	-107.0	NM_001361023	217830.0	Mm.218590	NM_145448	ENSMUSG00000021185	Dglucy	9030617O03Rik	D-glutamate cyclase	protein-coding	4.79890137849497	4.20473450154042	5.64126219281428	5.51104346168748	5.31267910390974	4.8034233815518	5.7240607375929	4.29541621331129	-0.0206354770712694	0.959012891428633	0.998431161219273
Merged-chr13-69431286-2	chr13	69431221	69431421	+	639.5	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	102543.0	NM_198600	210106.0	Mm.315959	NM_198600	ENSMUSG00000034575	Papd7	LAK-1|POLK|Pols|TRF4|TRF4-1	PAP associated domain containing 7	protein-coding	3.20032628967315	2.7993022255133	2.29388395175013	2.22193541427547	1.0790153700216	1.19998985286043	2.31389394082321	1.12964550577113	-2.74556058552629	0.0102069163350201	0.110326650619434
Merged-chr17-46252822-4	chr17	46252769	46252969	+	832.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_145353)	TTS (NM_145353)	-1296.0	NM_001111142	224813.0	Mm.70999	NM_001111142	ENSMUSG00000071073	Lrrc73	Gm88	leucine rich repeat containing 73	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-52023080-6	chr14	52022986	52023186	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2353.0	NM_027248	69890.0	Mm.475652	NM_027248	ENSMUSG00000049295	Zfp219	2010302A17Rik|Znf219	zinc finger protein 219	protein-coding	1.80777809369668	2.37379558118178	2.13565012219068	2.36333468862816	3.33430219092482	2.88746222004597	2.88558925154647	2.37562359301757	1.54429803042193	0.0458176831282386	0.308778557618375
Merged-chr11-93885781-4	chr11	93885697	93885897	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134012)	promoter-TSS (NM_134012)	-31.0	NM_001013375	217109.0	Mm.379350	NM_001013375	ENSMUSG00000054079	Utp18	6230425C22Rik|6430513M13|Wdr50	UTP18 small subunit processome component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-147839428-2	chr1	147839328	147839528	+	541.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	1341741.0	NM_001145807	215378.0	Mm.441817	NM_153539	ENSMUSG00000035131	Brinp3	B830045N13Rik|Fam5c	bone morphogenetic protein/retinoic acid inducible neural specific 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-125361775-2	chr5	125361675	125361875	+	703.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5b|LINE|L1	-20681.0	NM_001205083	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167897355-2	chr2	167897255	167897455	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-34972.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-122462791-2	chr14	122462691	122462891	+	568.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_022987, intron 1 of 1)	intron (NM_022987, intron 1 of 1)	2867.0	NM_022987	65100.0	Mm.390761	NM_022987	ENSMUSG00000041703	Zic5	1700049L20Rik|Opr	zinc finger protein of the cerebellum 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-22090559-4	chr3	22090477	22090677	+	832.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030732, intron 1 of 15)	intron (NM_030732, intron 1 of 15)	13925.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-72855157-2	chr1	72855057	72855257	+	780.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19708.0	NM_010518	16011.0	Mm.405761	NM_010518	ENSMUSG00000026185	Igfbp5	AI256729|AW208790|IGFBP-5|IGFBP-5P	insulin-like growth factor binding protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-111177961-4	chr8	111177857	111178057	+	933.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009149, intron 11 of 25)	intron (NM_009149, intron 11 of 25)	-32459.0	NR_040364	434350.0	Mm.442061	NR_040363		9430091E24Rik	-	RIKEN cDNA 9430091E24 gene	ncRNA	2.90325184720792	3.05641254908543	2.61949066273929	2.96837881435904	2.92643833226987	3.07811131816851	2.63940605682914	2.98307315114117	0.0373936777154629	0.954068245998425	0.998431161219273
Merged-chr3-106809486-1	chr3	106809386	106809586	+	613.0	f0_balb.idr	Intergenic	L1M2|LINE|L1	13071.0	NM_146489	258482.0	Mm.377527	NM_146489	ENSMUSG00000043529	Olfr266	MOR122-2	olfactory receptor 266	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-82914429-7	chr18	82914273	82914473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177464)	promoter-TSS (NM_001177464)	-259.0	NM_001177464	329003.0	Mm.326526	NM_183033	ENSMUSG00000058881	Zfp516	C330029B10Rik|D230016L03|Zfp26l|Znf516|mKIAA0222	zinc finger protein 516	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-34948932-1	chr5	34948832	34949032	+	744.0	f0_c57.idr	promoter-TSS (NM_173402)	promoter-TSS (NM_173402)	-516.0	NM_173402	71729.0	Mm.196208	NM_173402	ENSMUSG00000029101	Rgs12	1200016K18Rik|4632412M04Rik|AI481290|E130309H11	regulator of G-protein signaling 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-7558383-4	chr9	7558284	7558484	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008611)	promoter-TSS (NM_008611)	-45.0	NM_008611	17394.0	Mm.16415	NM_008611	ENSMUSG00000005800	Mmp8	BB138268	matrix metallopeptidase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3924612-4	chr19	3924515	3924715	+	801.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026316, intron 1 of 9)	intron (NM_026316, intron 1 of 9)	5101.0	NM_026316	67689.0	Mm.109341	NM_026316	ENSMUSG00000024885	Aldh3b1	1700001N19Rik|ALDH4|ALDH7	aldehyde dehydrogenase 3 family, member B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-38143710-4	chr3	38143603	38143803	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	64416.0	NR_040541	71342.0	Mm.410782	NR_040541	ENSMUSG00000106002	5430434I15Rik	-	RIKEN cDNA 5430434I15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-113761865-4	chr6	113761736	113761936	+	914.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001036684, intron 15 of 19)	intron (NM_001036684, intron 15 of 19)	-21155.0	NM_024206	110379.0	Mm.29296	NM_024206	ENSMUSG00000030298	Sec13	1110003H02Rik|Sec13l1|Sec13r	SEC13 homolog, nuclear pore and COPII coat complex component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-91038191-4	chr1	91038090	91038290	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111312, intron 1 of 12)	intron (NM_001111312, intron 1 of 12)	-15254.0	NM_001111311	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-20932821-4	chr5	20932711	20932911	+	990.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080977, intron 1 of 7)	PB1|SINE|Alu	-18178.0	NR_030699	320770.0	Mm.491217	NR_030699	ENSMUSG00000101013	A630072M18Rik	Aptr	RIKEN cDNA A630072M18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-32585581-2	chr9	32585481	32585681	+	665.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44129.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-64751357-4	chr17	64751253	64751453	+	815.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008549, intron 21 of 21)	intron (NM_008549, intron 21 of 21)	-15758.0	NR_105051	101202683.0	Mm.393309	NR_105051		Dreh	-	down-regulated in hepatocellular carcinoma	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-121693477-4	chr3	121693388	121693588	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22725.0	NM_001033814	619318.0	Mm.371258	NM_001033814	ENSMUSG00000074248	4930432M17Rik	-	RIKEN cDNA 4930432M17 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-24567181-2	chr4	24567081	24567281	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_149739, intron 13 of 24)	intron (NR_149739, intron 13 of 24)	70730.0	NM_199467	212377.0	Mm.120919	NM_199467	ENSMUSG00000045751	Mms22l	F730047E07Rik|Gm134	MMS22-like, DNA repair protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-90909171-4	chr5	90909068	90909268	+	981.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5269.0	NM_009140	20310.0	Mm.4979	NM_009140	ENSMUSG00000058427	Cxcl2	CINC-2a|GROb|Gro2|MIP-2|MIP-2a|Mgsa-b|Mip2|Scyb|Scyb2	chemokine (C-X-C motif) ligand 2	protein-coding	3.13470077059009	2.70453122445664	1.59907697907268	3.43305583355157	3.08982797287781	3.53218521721404	2.63162744909044	3.16652823881471	0.431539934468246	0.557831895928897	0.960321604678676
Merged-chr2-27775467-2	chr2	27775367	27775567	+	756.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	64884.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-100032232-2	chr10	100032132	100032332	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347156, intron 1 of 8)	PB1D9|SINE|Alu	16411.0	NM_013598	17311.0	Mm.45124	NM_013598	ENSMUSG00000019966	Kitl	Clo|Con|Gb|Kitlg|Mgf|SCF|SF|SLF|Sl|blz|contrasted	kit ligand	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128200370-2	chr10	128200270	128200470	+	566.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285777, intron 4 of 16)	intron (NM_001285777, intron 4 of 16)	5735.0	NM_001285779	216456.0	Mm.30102	NM_001033264	ENSMUSG00000044005	Gls2	A330074B06Rik|AI195532|GA|GLS|Lga	glutaminase 2 (liver, mitochondrial)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114238374-2	chr11	114238274	114238474	+	554.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	40116.0	NR_045930	73536.0	Mm.54275	NR_045930	ENSMUSG00000078600	1700092K14Rik	-	RIKEN cDNA 1700092K14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-83905944-2	chr9	83905844	83906044	+	635.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19193.0	NM_001305935	12040.0	Mm.12819	NM_199195	ENSMUSG00000032263	Bckdhb	BCKDE1B|BCKDH E1-beta	branched chain ketoacid dehydrogenase E1, beta polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-97777755-4	chr4	97777665	97777865	+	996.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001122953, exon 1 of 10)	5' UTR (NM_001122953, exon 1 of 10)	139.0	NM_010905	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-155237568-2	chr2	155237464	155237664	+	889.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_111890, intron 1 of 3)	RMER21A|LTR|ERV1	956.0	NM_001291108	67068.0	Mm.23693	NM_025947	ENSMUSG00000047459	Dynlrb1	2010012N15Rik|2010320M17Rik|9430076K19Rik|AV124457|DNLC2A|Dncl2a|km23-1	dynein light chain roadblock-type 1	protein-coding	2.48130105280908	3.3700032214116	3.06532319240247	3.47265786988156	2.50337767403974	3.84630555468908	2.85930227510581	3.55568970383372	0.244291803890004	0.707411169719683	0.998431161219273
Merged-chr18-80468599-4	chr18	80468476	80468676	+	919.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026295, intron 1 of 12)	intron (NM_026295, intron 1 of 12)	1091.0	NM_026295	67655.0	Mm.312893	NM_026295	ENSMUSG00000033323	Ctdp1	4930563P03Rik|AW553592	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1	protein-coding	1.29475509865418	1.81475004462654	1.75278725331655	2.43141595777689	1.98280909366388	2.53466469649654	1.14849150721132	1.71197474241425	0.13497990770383	0.900147518427491	0.998431161219273
Merged-chr6-125167236-2	chr6	125167136	125167336	+	952.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289726)	promoter-TSS (NM_001289726)	-769.0	NM_001289726	14433.0	Mm.304088	NM_008084	ENSMUSG00000057666	Gapdh	Gapd	glyceraldehyde-3-phosphate dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-109420792-2	chr11	109420692	109420892	+	594.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5154.0	NM_025275	13929.0	Mm.211850	NM_025275	ENSMUSG00000020610	Amz2	AA408420|ESTM12|X83328	archaelysin family metallopeptidase 2	protein-coding	1.00990380528024	1.49940967756317	1.23082179876763	0.793873588818052	0.900674773370892	0.846496436631503	0.820218136421071	0.616928361891431	-1.87733857155721	0.195305331350076	0.67607425433878
Merged-chr1-91080518-4	chr1	91080421	91080621	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008515, intron 6 of 22)	intron (NM_008515, intron 6 of 22)	27077.0	NM_001310732	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-25982681-2	chr15	25982581	25982781	+	826.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1685.0	NM_144523	52521.0	Mm.29145	NM_144523	ENSMUSG00000052253	Zfp622	1110033B05Rik|D15Ertd806e|ZPR9|Znf622	zinc finger protein 622	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-57794748-4	chr10	57794626	57794826	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_020561, exon 1 of 8)	exon (NM_020561, exon 1 of 8)	182.0	NM_020561	57319.0	Mm.2379	NM_020561	ENSMUSG00000019872	Smpdl3a	0610010C24Rik|AI529588|ASM3A|ASML3|ASML3A	sphingomyelin phosphodiesterase, acid-like 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-15958248-7	chr4	15958104	15958304	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013752, intron 1 of 15)	CpG	237.0	NM_013752	27354.0	Mm.20866	NM_013752	ENSMUSG00000028224	Nbn	Nbs1	nibrin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-98019485-4	chr3	98019390	98019590	+	795.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010928, intron 1 of 33)	intron (NM_010928, intron 1 of 33)	5952.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-104710919-4	chr2	104710827	104711027	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177190, intron 1 of 9)	L2c|LINE|L2	1235.0	NM_177190	320554.0	Mm.249065	NM_177190	ENSMUSG00000027175	Tcp11l1	C130096D04Rik	t-complex 11 like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-104973652-4	chr5	104973564	104973764	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030239, intron 5 of 15)	intron (NM_030239, intron 5 of 15)	9053.0	NM_030239	27405.0	Mm.389663	NM_030239	ENSMUSG00000029299	Abcg3	Abcp2|Mxr2	ATP binding cassette subfamily G member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-30885428-2	chr11	30885328	30885528	+	943.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175490)	promoter-TSS (NM_175490)	70.0	NM_175490	237716.0	Mm.338361	NM_175490	ENSMUSG00000043999	Gpr75	-	G protein-coupled receptor 75	protein-coding	0.81096036314131	1.69471888709731	2.38425208701835	1.26937837669235	0.815536894869066	1.70949759972918	1.88983940424251	0.844094752605107	-0.778828714712245	0.565367892087379	0.961622337576464
Merged-chr1-84218100-3	chr1	84218010	84218210	+	772.866699	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_105771)	TTS (NR_105771)	851.0	NR_105771	102465181.0		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-60891381-4	chr18	60891287	60891487	+	985.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20853.0	NM_001038499	545260.0	Mm.20147	NM_001038499	ENSMUSG00000036412	Arsi	BC020108	arylsulfatase i	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-32891701-4	chr17	32891570	32891770	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207245)	promoter-TSS (NM_207245)	-67.0	NM_207245	240066.0	Mm.26636	NM_207245	ENSMUSG00000095325	Zfp870	AI173952	zinc finger protein 870	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-8508486-1	chr17	8508386	8508586	+	881.1666869999999	f0_balb.idr	Intergenic	Intergenic	-18315.0	NM_001290707	23984.0	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-83508979-2	chr15	83508879	83509079	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357953, intron 1 of 11)	intron (NM_001357953, intron 1 of 11)	1928.0	NM_178869	319953.0	Mm.235007	NM_178869	ENSMUSG00000022442	Ttll1	6330444E16Rik|AV014541	tubulin tyrosine ligase-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78874299-3	chr15	78874180	78874380	+	624.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-2910.0	NM_145929	106039.0	Mm.251331	NM_145929	ENSMUSG00000033128	Gga1	4930406E12Rik|AU016030|AW209092	golgi associated, gamma adaptin ear containing, ARF binding protein 1	protein-coding	-2.18292257394068	-2.15545247547656	-2.03304972317742	-2.17058342868585	-2.18099422382073	-2.1536522739386	-2.16187909550322	-2.16936197735154	-0.683654500252594	0.846597994014493	1
Merged-chr6-97406523-1	chr6	97406423	97406623	+	780.0	f0_balb.idr	intron (NM_145148, intron 5 of 23)	intron (NM_145148, intron 5 of 23)	52763.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-90254204-4	chr3	90254121	90254321	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_013901)	TTS (NM_013901)	363.0	NM_001357152	74343.0	Mm.35627	NM_028881	ENSMUSG00000027936	Crtc2	4632407F12Rik|Torc2	CREB regulated transcription coactivator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-8919814-2	chr3	8919714	8919914	+	567.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025434, intron 1 of 2)	RSINE1|SINE|B4	4043.0	NM_025434	66230.0	Mm.38460	NM_025434	ENSMUSG00000040269	Mrps28	1500012D08Rik|AW061224	mitochondrial ribosomal protein S28	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-96280422-3	chr10	96280323	96280523	+	794.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54216.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117800710-2	chr8	117800610	117800810	+	557.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357233, intron 1 of 4)	intron (NM_001357233, intron 1 of 4)	1264.0	NM_001357233	68533.0	Mm.181836	NM_026758	ENSMUSG00000031843	Mphosph6	1110001M01Rik|AA536809|C86426	M phase phosphoprotein 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35976669-2	chr17	35976569	35976769	+	654.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001282012, intron 2 of 3)	intron (NM_001282012, intron 2 of 3)	2354.0	NM_001282012	75210.0	Mm.40036	NM_145487	ENSMUSG00000038500	Prr3	4930540G07Rik|Cat56	proline-rich polypeptide 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-35701212-2	chr5	35701112	35701312	+	879.2000119999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359895, intron 14 of 17)	intron (NM_001359895, intron 14 of 17)	-21432.0	NM_030127	78558.0	Mm.274255	NM_030127	ENSMUSG00000029096	Htra3	2210021K23Rik|9530081K03Rik|Prsp|Tasp	HtrA serine peptidase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-52003206-4	chr11	52003098	52003298	+	917.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1023.0	NM_001166657	213084.0	Mm.280557	NM_153785	ENSMUSG00000020389	Cdkl3	AI852479|B230379H01Rik	cyclin-dependent kinase-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140339980-2	chr5	140339880	140340080	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_172277)	TTS (NM_172277)	8024.0	NM_001356584	17766.0	Mm.118846	NM_008637	ENSMUSG00000036639	Nudt1	Mth1	nudix (nucleoside diphosphate linked moiety X)-type motif 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-47137368-4	chr19	47137274	47137474	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133746, intron 1 of 2)	intron (NM_133746, intron 1 of 2)	920.0	NM_133746	72691.0	Mm.31663	NM_133746	ENSMUSG00000033033	Calhm2	2810048G17Rik|Fam26b	calcium homeostasis modulator 2	protein-coding	1.8594656334031	1.21658363294592	0.976378385949494	1.32322477341353	1.6203535370147	1.93838897347848	1.36771115418288	1.47152524419535	0.752247760730864	0.528534358938814	0.949209944897898
Merged-chr2-4509472-5	chr2	4509390	4509590	+	821.200012	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 5 of 23)	intron (NM_001177843, intron 5 of 23)	-50264.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-86754520-2	chr11	86754420	86754620	+	552.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001003908, intron 1 of 31)	intron (NM_001003908, intron 1 of 31)	3047.0	NM_001003908	67300.0	Mm.254588	NM_001003908	ENSMUSG00000047126	Cltc	3110065L21Rik|CHC|R74732	clathrin, heavy polypeptide (Hc)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-58907013-1	chr2	58906913	58907113	+	638.0	f0_balb.idr	intron (NM_001362394, intron 10 of 13)	intron (NM_001362394, intron 10 of 13)	151829.0	NM_029692	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-99393106-4	chr12	99392999	99393199	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183186, intron 1 of 5)	CpG	56975.0	NM_183186	71375.0	Mm.341972	NM_183186	ENSMUSG00000033713	Foxn3	5430426H20Rik|AA589593|AW556347|Ches1|Ches1l|HTLFL1	forkhead box N3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-25982793-2	chr2	25982693	25982893	+	924.7999880000001	f1_balb.idr|f1_c57bl6.idr	exon (NM_001276361, exon 1 of 18)	exon (NM_001276361, exon 1 of 18)	489.0	NM_001276360	227634.0	Mm.36834	NM_001115076	ENSMUSG00000026933	Camsap1	9530003A05Rik|C77823|PRO2405	calmodulin regulated spectrin-associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-112934580-2	chr9	112934480	112934680	+	554.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17B|LTR|ERVK	652572.0	NR_040760	102688.0	Mm.394901	NR_040760	ENSMUSG00000109890	AU023762	-	expressed sequence AU023762	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191609770-2	chr1	191609668	191609868	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178632, intron 11 of 19)	MTC|LTR|ERVL-MaLR	34132.0	NM_001306204	77065.0	Mm.338175	NM_178632	ENSMUSG00000037461	Ints7	5930412E23Rik|int7	integrator complex subunit 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-23721002-4	chr13	23720892	23721092	+	885.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVB4_1B-I_MM-int|LTR|ERVK	-10138.0	NM_010424	15216.0	Mm.2681	NM_010424	ENSMUSG00000006611	Hfe	MR2	hemochromatosis	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-89978423-2	chr9	89978323	89978523	+	857.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357743, intron 10 of 26)	intron (NM_001357743, intron 10 of 26)	68648.0	NM_001357743	19417.0	Mm.44561	NM_011245	ENSMUSG00000032356	Rasgrf1	AI844718|CDC25|CDC25Mm|Gnrp|Grf1|Grfbeta|P190-A|Ras-GRF1|p190|p190RhoGEF	RAS protein-specific guanine nucleotide-releasing factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-54770026-3	chr11	54769941	54770141	+	801.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178626, intron 1 of 5)	Lx8|LINE|L1	17662.0	NM_178626	72729.0	Mm.29476	NM_178626	ENSMUSG00000052298	Cdc42se2	2810404F18Rik|AA408783|AA536669|SPEC2	CDC42 small effector 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-37936623-1	chr18	37936523	37936723	+	544.0	f1_c57bl6.idr	TTS (NM_010411)	TTS (NM_010411)	-1147.0	NM_001305980	13367.0	Mm.195916	NM_007858	ENSMUSG00000024456	Diaph1	D18Wsu154e|Dia1|Diap1|Drf1|p140mDia	diaphanous related formin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-194677981-1	chr1	194677881	194678081	+	1000.0	f0_balb.idr	intron (NM_008882, intron 3 of 31)	intron (NM_008882, intron 3 of 31)	58152.0	NM_008882	18845.0	Mm.2251	NM_008882	ENSMUSG00000026640	Plxna2	2810428A13Rik|AA589422|AW457381|OCT|PlexA2|Plxn2|mKIAA0463	plexin A2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-112894711-3	chr12	112894601	112894801	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25840.0	NR_105906	102465567.0		NR_105906	ENSMUSG00000098338	Mir6941	Gm27923|mmu-mir-6941	microRNA 6941	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-120954545-2	chr4	120954456	120954656	+	927.0	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-2855.0	NM_001005788	381549.0	Mm.331840	NM_001005788	ENSMUSG00000064141	Zfp69	Gm1029|Krab2|Zfp63	zinc finger protein 69	protein-coding	1.06457555705573	1.96540790407035	1.12314451059957	1.53179390665131	2.0785106513182	2.35032822993853	1.91101644884848	2.59395619139993	2.26165323465881	0.0377421837436409	0.276116293022075
Merged-chr19-55332834-3	chr19	55332725	55332925	+	800.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360431, intron 3 of 8)	intron (NM_001360431, intron 3 of 8)	16768.0	NM_001293686	53611.0	Mm.258637	NM_016862	ENSMUSG00000024983	Vti1a	1110014F16Rik|1110018K19Rik|4921537J05Rik|MVti1|MVti1a|Vti1|Vti1-rp2	vesicle transport through interaction with t-SNAREs 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-85567448-1	chr9	85567348	85567548	+	928.0	f1_c57bl6.idr	Intergenic	Intergenic	181886.0	NM_001081282	108837.0	Mm.22315	NM_175371	ENSMUSG00000035941	Ibtk	5430411K16Rik|AA409502|BTKI|mKIAA1417	inhibitor of Bruton agammaglobulinemia tyrosine kinase	protein-coding	1.68133375487549	2.67039975985823	0.639095890165336	1.80363113423797	0.590363201847628	0.970653669940589	0.644566520211863	0.622961845668551	-4.66273740499364	0.00225598947813989	0.0365117289910824
Merged-chr3-153655261-2	chr3	153655161	153655361	+	901.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011372, intron 1 of 4)	intron (NM_011372, intron 1 of 4)	69872.0	NM_011372	20447.0	Mm.296453	NM_011372	ENSMUSG00000052544	St6galnac3	Siat7c	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-114127583-4	chr5	114127512	114127712	+	987.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001359940, exon 2 of 4)	exon (NM_001359940, exon 2 of 4)	606.0	NM_001359940	231642.0	Mm.332593	NM_175016	ENSMUSG00000044339	Alkbh2	9530023G02|AU016977|Abh2|mABH2	alkB homolog 2, alpha-ketoglutarate-dependent dioxygenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-146345407-4	chr3	146345296	146345496	+	795.295837	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33548.0	NR_033542	100038607.0	Mm.365888	NR_033542	ENSMUSG00000105602	Gm10636	-	predicted gene 10636	ncRNA	2.87262710861688	3.80577224696505	1.87222024789142	2.24289189942187	3.42804469481116	3.45764821246949	2.51622558294894	4.2203655151569	0.996996695369516	0.172170060082693	0.640195159361202
Merged-chr12-32920434-4	chr12	32920333	32920533	+	734.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_044986, intron 5 of 5)	intron (NR_044986, intron 5 of 5)	33356.0	NR_044986	74076.0	Mm.50114	NR_044986	ENSMUSG00000097494	4933406C10Rik	-	RIKEN cDNA 4933406C10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-75415302-2	chr8	75415202	75415402	+	714.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	-33392.0	NM_027944	71831.0	Mm.443238	NM_027944	ENSMUSG00000031620	Iqcm	1700007B14Rik	IQ motif containing M	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80696674-3	chr10	80696560	80696760	+	847.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172457, intron 1 of 3)	LTR33A|LTR|ERVL	5160.0	NM_172457	208228.0	Mm.49309	NM_172457	ENSMUSG00000003348	Mob3a	5330417K06Rik|A630029F06|AV218468|Mobkl2a	MOB kinase activator 3A	protein-coding	1.42968317984308	1.48119159175154	1.77067244315053	1.38894070411739	1.44190742569982	1.62828818117177	0.912726136614107	0.900170499812588	-0.973004377155822	0.446675139494828	0.914332630287583
Merged-chr4-134925973-2	chr4	134925873	134926073	+	967.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_023665, intron 3 of 4)	intron (NM_023665, intron 3 of 4)	2348.0	NM_023665	27981.0	Mm.331964	NM_023665	ENSMUSG00000037266	Rsrp1	2700043I21Rik|D4Ucla2|D4Wsu53e	arginine/serine rich protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-80948895-2	chr13	80948795	80948995	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_103550)	TTS (NR_103550)	8492.0	NR_103550	71416.0	Mm.415500	NR_103550		5430425K12Rik	-	RIKEN cDNA 5430425K12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-131552791-3	chr3	131552646	131552846	+	860.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12022.0	NM_001289479	23971.0	Mm.244912	NM_011863	ENSMUSG00000028032	Papss1	AI325286|Asapk|SK1	3'-phosphoadenosine 5'-phosphosulfate synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30076650-1	chr2	30076550	30076750	+	799.0	f1_balb.idr	Intergenic	PB1D10|SINE|Alu	-2048.0	NM_153805	263803.0	Mm.233843	NM_153805	ENSMUSG00000026785	Pkn3	AW209115|BC034126	protein kinase N3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-62604359-2	chr11	62604259	62604459	+	896.400024	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028541)	promoter-TSS (NR_028541)	-171.0	NR_028541	100217444.0		NR_028541		Snord65	MBII-135|snoRNA135	small nucleolar RNA, C/D box 65	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16924619-2	chr7	16924522	16924722	+	1000.0	f0_c57.idr|f1_c57bl6.idr	promoter-TSS (NM_007590)	promoter-TSS (NM_007590)	-590.0	NM_007590	12315.0	Mm.288630	NM_007590	ENSMUSG00000019370	Calm3	CaMA|Cam3|Camc|R75142	calmodulin 3	protein-coding	2.16558328691807	3.12682071549751	2.7356062023835	2.75911186733751	2.63851787895544	3.05877103546901	1.52442853706803	3.17912936089057	0.0188675783033847	0.981232492295825	0.998431161219273
Merged-chr12-110984204-2	chr12	110984104	110984304	+	691.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5164.0	NM_001361916	74251.0	Mm.250989	NM_175207	ENSMUSG00000037904	Ankrd9	2500003O20Rik	ankyrin repeat domain 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-181541973-4	chr2	181541873	181542073	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271585, intron 2 of 5)	intron (NM_001271585, intron 2 of 5)	21488.0	NM_001271584	13002.0	Mm.140761	NM_016775	ENSMUSG00000000826	Dnajc5	2610314I24Rik|AU018536|Csp	DnaJ heat shock protein family (Hsp40) member C5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-84779388-2	chr2	84779288	84779488	+	777.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3959.0	NM_009776	12258.0	Mm.38888	NM_009776	ENSMUSG00000023224	Serping1	C1INH|C1nh	serine (or cysteine) peptidase inhibitor, clade G, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-63408897-4	chr4	63408786	63408986	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5441.0	NM_001045514	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33914256-4	chr16	33914093	33914293	+	867.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 9 of 14)	intron (NM_001145884, intron 9 of 14)	52845.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65674997-2	chr9	65674897	65675097	+	976.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1551.0	NM_010952	18247.0	Mm.116749	NM_010952	ENSMUSG00000040652	Oaz2	AZ-2|AZ2|Oaz2-ps|Sez15	ornithine decarboxylase antizyme 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16296973-4	chr7	16296852	16297052	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10157.0	NM_001136471	243846.0	Mm.482401	NM_172297	ENSMUSG00000041375	Ccdc9	2600011L02Rik	coiled-coil domain containing 9	protein-coding	5.12937183166342	5.21803394242897	5.46220022132564	5.2529392660681	4.71106612165581	4.14043590607702	4.58156910136484	4.68564414364	-0.856491659992005	0.00837721397009929	0.0958453399999218
Merged-chr19-8807032-4	chr19	8806939	8807139	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4509.0	NM_001098237	75291.0	Mm.23423	NM_133759	ENSMUSG00000071661	Zbtb3	4930563M09Rik	zinc finger and BTB domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-93053736-2	chr9	93053636	93053836	+	670.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3C|LINE|L1	-48003.0	NR_040756	78349.0	Mm.52612	NR_040756	ENSMUSG00000100294	1700034K08Rik	-	RIKEN cDNA 1700034K08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-19395848-4	chr13	19395742	19395942	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024270)	promoter-TSS (NM_024270)	-29.0	NM_001347485	76205.0	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-80298547-2	chr2	80298447	80298647	+	737.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	6077.0	NM_177256	320769.0	Mm.60992	NM_177256	ENSMUSG00000050114	Prdx6b	1-cysPrx-P1|4930414C22Rik|Aop2-rs1|Prdx5-rs1|Prdx6-ps1|Prdx6-rs1|Prdx6-rs1-ps	peroxiredoxin 6B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-34744553-1	chr2	34744453	34744653	+	541.0	f1_c57bl6.idr	intron (NR_151469, intron 2 of 26)	intron (NR_151469, intron 2 of 26)	10679.0	NM_001356441	66691.0	Mm.156452	NM_025709	ENSMUSG00000026867	Gapvd1	2010005B09Rik|4432404J10Rik|AW108497|Gapex-5|RAP6|RME-6|mKIAA1521	GTPase activating protein and VPS9 domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-111940642-4	chr8	111940547	111940747	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026693)	promoter-TSS (NM_026693)	-56.0	NM_026693	93739.0	Mm.371666	NM_026693	ENSMUSG00000031950	Gabarapl2	0610012F20Rik|2900019O08Rik|AI173605|GATE-16|Gef2	gamma-aminobutyric acid (GABA) A receptor-associated protein-like 2	protein-coding	6.17060790335027	6.00010495364481	6.23472054354285	6.19757478936791	6.1538525405126	6.45571305329852	5.46936347436411	5.29003052823161	-0.25684468096053	0.344761379708062	0.845794803766071
Merged-chr2-173018165-3	chr2	173018137	173018337	+	929.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3665.0	NM_019547	56190.0	Mm.485782	NM_019547	ENSMUSG00000027510	Rbm38	Rnpc1|Seb4|Seb4l	RNA binding motif protein 38	protein-coding	2.60349417092184	1.47984030557378	2.19148421587067	2.22766773340324	1.92775436053262	1.48914927166231	2.20934586842726	1.17832497111613	-1.10639049226504	0.288136457757344	0.793815200967874
Merged-chr14-63943951-2	chr14	63943851	63944051	+	855.833374	f1_balb.idr|f1_c57bl6.idr	exon (NM_011446, exon 1 of 2)	exon (NM_011446, exon 1 of 2)	245.0	NM_011446	20680.0	Mm.42162	NM_011446	ENSMUSG00000063060	Sox7	-	SRY (sex determining region Y)-box 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-35645582-4	chr8	35645482	35645682	+	995.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081279, intron 1 of 2)	intron (NM_001081279, intron 1 of 2)	-56562.0	NR_040376	100504714.0	Mm.381744	NR_040376	ENSMUSG00000097357	Gm16793	-	predicted gene, 16793	ncRNA	-2.05752322593321	-2.15521190974092	-2.16307242109104	-2.16952927915413	-2.17938029103484	-2.15350850414045	-2.16129297361887	-2.16837350464794	-0.683654500252594	0.846597994014493	1
Merged-chr10-80173734-3	chr10	80173634	80173834	+	898.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_152857)	TTS (NR_152857)	790.0	NM_027207	69770.0	Mm.302754	NM_027207	ENSMUSG00000035595	1600002K03Rik	-	RIKEN cDNA 1600002K03 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-26015537-4	chr8	26015327	26015527	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008033, exon 1 of 9)	exon (NM_008033, exon 1 of 9)	174.0	NM_008033	14272.0	Mm.3496	NM_008033	ENSMUSG00000015994	Fnta	FTA	farnesyltransferase, CAAX box, alpha	protein-coding	0.611623821306409	0.975202477215498	0.360387556070911	0.355070642065623	0.826980050739291	0.368827418527567	0.541105083195266	0.891852990422827	0.418444417845587	0.812312774409706	1
Merged-chr2-90747685-2	chr2	90747585	90747785	+	604.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_018828, intron 2 of 16)	intron (NM_018828, intron 2 of 16)	2315.0	NM_018828	55935.0	Mm.489638	NM_018828	ENSMUSG00000008200	Fnbp4	FBP30|Fnbp30|mKIAA1014	formin binding protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-37698904-3	chr19	37698801	37699001	+	703.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007811, exon 3 of 7)	exon (NM_007811, exon 3 of 7)	1093.0	NM_007811	13082.0	Mm.42230	NM_007811	ENSMUSG00000024987	Cyp26a1	Cyp26|P450RA|P450RAI|RAH	cytochrome P450, family 26, subfamily a, polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102401235-2	chr12	102401135	102401335	+	697.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011175, intron 8 of 13)	intron (NM_011175, intron 8 of 13)	38578.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-40300890-4	chr10	40300786	40300986	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009665, intron 1 of 7)	CpG	1300.0	NM_007444	100041585.0	Mm.476925	NM_007444	ENSMUSG00000063953	Amd2	AdoMetDC|Amd1|Amd3	S-adenosylmethionine decarboxylase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-9073972-4	chr4	9073858	9074058	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-195335.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46395234-4	chr19	46395130	46395330	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016860, intron 1 of 10)	CpG	505.0	NM_016860	54130.0	Mm.3118	NM_016860	ENSMUSG00000025228	Actr1a	Arp1|alpha-Arp1	ARP1 actin-related protein 1A, centractin alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-114329954-4	chr9	114329838	114330038	+	786.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007535)	promoter-TSS (NM_007535)	-197.0	NM_007535	12046.0	Mm.378887	NM_007535	ENSMUSG00000053820	Bcl2a1c	A1-c	B cell leukemia/lymphoma 2 related protein A1c	protein-coding	2.57533553721602	1.50270908212263	1.19112585213838	1.16477224314943	2.37514999461353	2.76944638083067	1.86561416821786	2.58615355448868	1.53740240629169	0.146907135192216	0.597083945811722
Merged-chr4-108328275-4	chr4	108328168	108328368	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027250, exon 1 of 3)	exon (NM_027250, exon 1 of 3)	116.0	NM_027250	69893.0	Mm.28354	NM_027250	ENSMUSG00000048351	Coa7	2010305A19Rik|AI451324|D4Ertd796e|Selrc1	cytochrome c oxidase assembly factor 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97866787-4	chr6	97866688	97866888	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113198, intron 1 of 9)	intron (NM_001113198, intron 1 of 9)	59730.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-152158270-6	chr4	152158172	152158372	+	896.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008236)	promoter-TSS (NM_008236)	-595.0	NM_001301805	15206.0	Mm.57038	NM_008236	ENSMUSG00000028940	Hes2	HES-2	hes family bHLH transcription factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84391034-1	chr8	84390934	84391134	+	663.5	f0_balb.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-24330.0	NM_001252060	12286.0	Mm.334658	NM_007578	ENSMUSG00000034656	Cacna1a	APCA|BI|Caca1a|Cacnl1a4|Cav2.1|Ccha1a|EA2|FHM|HPCA|MHP|MHP1|SCA6|alpha1A|la|nmf352|rkr|smrl|tg	calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	protein-coding	-0.0714754737492334	-0.0575973825201528	-0.0621621192352131	0.0888291510575636	0.546073116585626	0.28449294763745	0.108977606753598	0.0915726504420811	2.98152617003937	0.149172485828921	1
Merged-chr18-34378188-4	chr18	34378084	34378284	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1E2|LTR|ERVL-MaLR	-4769.0	NM_007874	13476.0	Mm.280075	NM_007874	ENSMUSG00000005873	Reep5	AI324241|AU022809|AW495741|DP1/TB2|Dp1|R74856|TB2/DP1	receptor accessory protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-121245849-4	chr6	121245749	121245949	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011909)	promoter-TSS (NM_011909)	-57.0	NM_011909	24110.0	Mm.326911	NM_011909	ENSMUSG00000030107	Usp18	1110058H21Rik|AW047653|UBP43|Ubp15	ubiquitin specific peptidase 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-103488936-3	chr14	103488858	103489058	+	849.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24383.0	NM_022886	64929.0	Mm.244003	NM_022886	ENSMUSG00000022123	Scel	9230114I02Rik	sciellin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-105164237-4	chr4	105164138	105164338	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080555, intron 1 of 5)	intron (NM_080555, intron 1 of 5)	6891.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-68260190-4	chr15	68260087	68260287	+	961.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1331.0	NM_198644	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	2.21439763675371	1.40495651123727	1.36882567582007	2.09963735393433	1.59352577567848	1.77419524929634	1.5609300562568	2.01669644959647	-0.284065488524132	0.786507946290239	0.998431161219273
Merged-chr4-59444204-1	chr4	59444104	59444304	+	620.0	f0_balb.idr	Intergenic	ID4|SINE|ID	-5571.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-46336684-2	chr17	46336584	46336784	+	602.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-8661.0	NM_170680	224814.0	Mm.76543	NM_145140	ENSMUSG00000032842	Abcc10	Mrp7|mFLJ00002	ATP-binding cassette, sub-family C (CFTR/MRP), member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-35102244-1	chr8	35102144	35102344	+	547.0	f1_c57bl6.idr	Intergenic	RLTR49|LTR|ERVK	-136554.0	NM_175091	21951.0	Mm.88364	NM_175091	ENSMUSG00000031529	Tnks	4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	protein-coding	-0.429165910719733	-0.873612895455471	-0.880042310359133	-0.882147047040279	-0.515285789036623	-0.870994549976101	-0.879439369138014	-0.881779851595733	-0.36230783815378	0.907723332250447	1
Merged-chr10-111365928-2	chr10	111365828	111366028	+	607.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	67249.0	NM_027914	71769.0	Mm.45256	NM_027914	ENSMUSG00000035759	Bbs10	1300007O09Rik|AI452285	Bardet-Biedl syndrome 10 (human)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-73130732-2	chr14	73130632	73130832	+	625.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	-11778.0	NM_001170694	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118465158-3	chr11	118465027	118465227	+	750.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-10132.0	NR_045902	100126224.0	Mm.441989	NR_045902	ENSMUSG00000086514	Gm11747	-	predicted gene 11747	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-85086612-1	chr1	85086512	85086712	+	825.200012	f1_balb.idr	Intergenic	Intergenic	23241.0	NM_213615	381287.0	Mm.487565	NM_213615	ENSMUSG00000089844	A530032D15Rik	Gm1888	RIKEN cDNA A530032D15Rik gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-90068942-2	chr9	90068842	90069042	+	936.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001312649, intron 8 of 10)	URR1A|DNA|hAT-Charlie	14675.0	NM_001312649	13036.0	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-33924783-2	chr4	33924683	33924883	+	738.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001355021, exon 1 of 6)	5' UTR (NM_001355021, exon 1 of 6)	190.0	NM_001355021	12801.0	Mm.7992	NM_007726	ENSMUSG00000044288	Cnr1	CB-R|CB1|CB1R	cannabinoid receptor 1 (brain)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21235518-4	chr9	21235420	21235620	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110307, intron 2 of 5)	intron (NM_001110307, intron 2 of 5)	3812.0	NM_016679	50868.0	Mm.248266	NM_016679	ENSMUSG00000003308	Keap1	INRF2|mKIAA0132	kelch-like ECH-associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-142762545-1	chr3	142762445	142762645	+	657.0	f1_balb.idr	Intergenic	Intergenic	-2702.0	NM_145546	229906.0	Mm.271756	NM_145546	ENSMUSG00000028271	Gtf2b	-	general transcription factor IIB	protein-coding	1.78643515203707	1.31293462887944	0.869712166735062	1.61891546933441	0.838444137584829	0.889551850248498	1.68734453475132	1.82380956532452	-0.157714623933084	0.909492326335474	0.998431161219273
Merged-chr18-24467114-4	chr18	24467059	24467259	+	826.299988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-3712.0	NM_026529	68046.0	Mm.276574	NM_026529	ENSMUSG00000024273	2700062C07Rik	AI195775|C87515	RIKEN cDNA 2700062C07 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-95850471-1	chr11	95850371	95850571	+	689.0	f1_balb.idr	Intergenic	Intergenic	7226.0	NM_001284397	14710.0	Mm.46299	NM_023121	ENSMUSG00000038811	Gngt2	AV096488	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2	protein-coding	0.971350673469211	2.23465408840361	1.02613003377663	2.34116218624697	1.66206966904062	1.0566801475975	2.26625868782626	1.88042243510683	-0.0728095780852528	0.953612496451152	0.998431161219273
Merged-chr17-5801361-2	chr17	5801261	5801461	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045079, intron 2 of 2)	RMER5|LTR|ERV1	1871.0	NR_045080	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-147868657-4	chr4	147868544	147868744	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010244)	promoter-TSS (NM_010244)	75.0	NM_001025365	28010.0	Mm.250504	NM_133873	ENSMUSG00000029022	Miip	AA553001|AI853621|D4Wsu114e|IIP45	migration and invasion inhibitory protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-86405231-3	chr6	86405124	86405324	+	782.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164078, intron 1 of 11)	intron (NM_001164078, intron 1 of 11)	1005.0	NM_001164078	21841.0	Mm.333219	NM_011585	ENSMUSG00000071337	Tia1	2310050N03Rik|AI256674|TIA-1|mTIA-1	cytotoxic granule-associated RNA binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-90182713-2	chr9	90182613	90182813	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001003911, intron 8 of 23)	intron (NM_001003911, intron 8 of 23)	19735.0	NM_001311115	108153.0	Mm.102141	NM_001003911	ENSMUSG00000032363	Adamts7	ADAM-TS7|ADAMTS7B	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-116423619-4	chr3	116423510	116423710	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001080818, exon 1 of 16)	5' UTR (NM_001080818, exon 1 of 16)	422.0	NM_001080818	229776.0	Mm.17647	NM_001080818	ENSMUSG00000033502	Cdc14a	A830059A17Rik|CDC14A2|CDC14a1|Cdc14	CDC14 cell division cycle 14A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80950580-2	chr10	80950480	80950680	+	737.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010319, exon 4 of 4)	3' UTR (NM_010319, exon 4 of 4)	20489.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167463171-2	chr2	167463071	167463271	+	743.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001304542, intron 9 of 15)	intron (NM_001304542, intron 9 of 15)	-29474.0	NM_030743	81018.0	Mm.22225	NM_030743	ENSMUSG00000006418	Rnf114	1110008J21Rik|AI225886|AW549494|Zfp228|Zfp313|Znf228	ring finger protein 114	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-126205739-2	chr4	126205639	126205839	+	724.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-3029.0	NM_146153	230753.0	Mm.29813	NM_146153	ENSMUSG00000043962	Thrap3	9330151F09Rik|B230333E16Rik|Trap150	thyroid hormone receptor associated protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-34070864-1	chr11	34070764	34070964	+	542.0	f1_c57bl6.idr	intron (NM_010696, intron 6 of 20)	intron (NM_010696, intron 6 of 20)	23936.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	-2.18292257394068	-2.15545247547656	-2.03304972317742	-2.17058342868585	-2.18099422382073	-2.1536522739386	-2.16187909550322	-2.16936197735154	-0.683654500252594	0.846597994014493	1
Merged-chr7-45081275-3	chr7	45081148	45081348	+	946.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	10965.0	NM_026555	52377.0	Mm.29997	NM_026555	ENSMUSG00000019539	Rcn3	6030455P07Rik|D530026G20Rik|D7Ertd671e|RLP49	reticulocalbin 3, EF-hand calcium binding domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-61224453-2	chr8	61224353	61224553	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021506, intron 1 of 11)	CpG	282.0	NM_021506	59009.0	Mm.27949	NM_021506	ENSMUSG00000031642	Sh3rf1	2200003J05Rik|Posh|R75531|Sh3md2	SH3 domain containing ring finger 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80569153-2	chr10	80569053	80569253	+	783.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_078477, exon 2 of 2)	exon (NM_078477, exon 2 of 2)	-7593.0	NM_025852	66932.0	Mm.1116	NM_025852	ENSMUSG00000047417	Rexo1	1700021P10Rik|2610511M11Rik|AW050347|EloA-BP1|Rex1|Tceb3bp1	REX1, RNA exonuclease 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153196598-2	chr2	153196498	153196698	+	713.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133847, intron 12 of 17)	B1_Mus2|SINE|Alu	28843.0	NM_198617	241732.0	Mm.277243	NM_198617	ENSMUSG00000074671	Tspyl3	AW212607|Gm36	TSPY-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-88438915-4	chr4	88438782	88438982	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025760)	promoter-TSS (NM_025760)	44.0	NM_025760	66775.0	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	4.25667581871966	4.01334075896475	4.33988501366793	2.36145448587729	3.2800760308774	2.55966882768449	3.18222710828905	3.27812812813413	-1.23576073948704	0.0448714743614986	0.304621623569932
Merged-chr10-80259804-3	chr10	80259704	80259904	+	794.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001347119, exon 2 of 6)	exon (NM_001347119, exon 2 of 6)	1208.0	NM_001347119	14431.0	Mm.7329	NM_010255	ENSMUSG00000020150	Gamt	AA571402|Spintz1	guanidinoacetate methyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-60883665-4	chr8	60883565	60883765	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR16|LTR|ERVK	-6728.0	NM_028299	72612.0	Mm.25263	NM_028299	ENSMUSG00000038005	Hpf1	2700029M09Rik|C230006B22Rik|C4orf27	histone PARylation factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-32324766-4	chr11	32324626	32324826	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23085.0	NM_177364	268396.0	Mm.227616	NM_177364	ENSMUSG00000040711	Sh3pxd2b	G431001E03Rik|TSK4|fad49	SH3 and PX domains 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-67297610-4	chr5	67297520	67297720	+	870.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9335.0	NM_178651	109108.0	Mm.234455	NM_178651	ENSMUSG00000029221	Slc30a9	2310024J23Rik|AL024256|GAC63|HUEL|znT-9	solute carrier family 30 (zinc transporter), member 9	protein-coding	3.54284129499467	3.83471926183804	3.29366495825954	2.4184964665189	2.88835526606972	3.66605944655879	1.90594683193341	2.58024213765582	-0.750247881750372	0.291521439234152	0.796128548904676
Merged-chr2-168884890-2	chr2	168884790	168884990	+	687.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	70697.0	NM_009564	22722.0	Mm.2095	NM_009564	ENSMUSG00000027551	Zfp64	-	zinc finger protein 64	protein-coding	1.75567025753875	2.18745281203936	1.71968818640642	1.54648579456161	1.34763485788908	0.901342160268497	0.882840307443661	0.866623005611245	-3.1945019453097	0.0201357593702924	0.180124338589355
Merged-chr8-11103095-2	chr8	11102995	11103195	+	623.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-94665.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-66854592-2	chr17	66854477	66854677	+	621.0	f0_balb.idr|f1_balb.idr	intron (NM_001357625, intron 15 of 32)	intron (NM_001357625, intron 15 of 32)	140121.0	NR_151453	102639882.0	Mm.443262	NR_151453		1700016K05Rik	-	RIKEN cDNA 1700016K05 gene	ncRNA	0.0476582816809759	0.110062044897347	-0.0781014184137835	-0.0816252628911752	0.27630754991521	0.522281728839047	-0.0770923133244409	0.0767370139572651	2.1059050073984	0.315309575194901	1
Merged-chr4-155575200-2	chr4	155575100	155575300	+	914.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355599, intron 1 of 10)	MTD|LTR|ERVL-MaLR	11385.0	NM_001355599	192185.0	Mm.28347	NM_138671	ENSMUSG00000029063	Nadk	4432404C02Rik|BC004012	NAD kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30605515-2	chr2	30605415	30605615	+	971.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030137, intron 1 of 1)	intron (NM_030137, intron 1 of 1)	10471.0	NM_030137	78617.0	Mm.40413	NM_030137	ENSMUSG00000047363	Cstad	9530039B02Rik	CSA-conditional, T cell activation-dependent protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-113610347-3	chr13	113610233	113610433	+	726.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130796, intron 1 of 1)	MTEa|LTR|ERVL-MaLR	8231.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-85324563-4	chr9	85324499	85324699	+	857.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001160378, exon 3 of 3)	exon (NM_001160378, exon 3 of 3)	2525.0	NM_001160378	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-65373518-3	chr7	65373427	65373627	+	893.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2283.0	NM_009386	21872.0	Mm.4342	NM_009386	ENSMUSG00000030516	Tjp1	ZO1	tight junction protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-104986878-4	chr5	104986762	104986962	+	876.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4145.0	NM_030239	27405.0	Mm.389663	NM_030239	ENSMUSG00000029299	Abcg3	Abcp2|Mxr2	ATP binding cassette subfamily G member 3	protein-coding	3.7761444229312	3.45718213988316	4.1838322359559	3.96939266610016	3.42838995967603	2.19157525456434	4.04955865010486	4.04268091200536	-0.370184151044094	0.515475621930541	0.947402641287243
Merged-chr10-127681092-2	chr10	127680992	127681192	+	675.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_173732, intron 1 of 6)	intron (NM_173732, intron 1 of 6)	4027.0	NM_001113211	210035.0	Mm.251075	NM_173732	ENSMUSG00000040195	Nemp1	Tmem194|Tmem194a	nuclear envelope integral membrane protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-33257105-2	chr2	33257005	33257205	+	779.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290570, intron 7 of 16)	intron (NM_001290570, intron 7 of 16)	41144.0	NM_011923	26360.0	Mm.208919	NM_011923	ENSMUSG00000004105	Angptl2	AI593246|AW260363|Arp2	angiopoietin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-96669988-4	chr9	96669884	96670084	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38481.0	NM_053268	114713.0	Mm.124502	NM_053268	ENSMUSG00000032413	Rasa2	5430433H21Rik|AA517451|AU023900|GAP1m	RAS p21 protein activator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27738775-2	chr2	27738675	27738875	+	809.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290481, intron 2 of 9)	intron (NM_001290481, intron 2 of 9)	28192.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-148252936-3	chr6	148252841	148253041	+	670.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198967, intron 13 of 19)	intron (NM_198967, intron 13 of 19)	-40567.0	NM_001286560	67456.0	Mm.59812	NM_026168	ENSMUSG00000030304	Ergic2	1200009B18Rik|4930572C01Rik|AA408438|Ptx1	ERGIC and golgi 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-30635400-4	chr14	30635307	30635507	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9199.0	NM_011103	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	1.54184842818166	1.97494640089774	1.20822935637122	1.18122992951239	1.55498168918552	1.61082765709321	0.994165352424878	2.11089618112414	0.370967814507092	0.755032023199378	0.998431161219273
Merged-chr17-84094542-3	chr17	84094431	84094631	+	884.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15871.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80075051-4	chr7	80075104	80075304	+	996.357178	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045695)	promoter-TSS (NR_045695)	53.0	NR_045695	100859962.0	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-74020078-2	chr17	74019978	74020178	+	968.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_053188, intron 4 of 4)	intron (NM_053188, intron 4 of 4)	27838.0	NM_053188	94224.0	Mm.38933	NM_053188	ENSMUSG00000038541	Srd5a2	5ART2|S5AR 2	steroid 5 alpha-reductase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-65600077-4	chr18	65599978	65600178	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361051, intron 1 of 8)	intron (NM_001361051, intron 1 of 8)	-6605.0	NM_001361052	328977.0	Mm.286232	NM_207255	ENSMUSG00000042439	Zfp532	C530030I18Rik|Znf532|mKIAA1629	zinc finger protein 532	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-37345336-4	chr13	37345269	37345469	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010745)	promoter-TSS (NM_010745)	24.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-15830308-4	chr17	15830223	15830423	+	956.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3737.0	NM_178615	68799.0	Mm.293466	NM_178615	ENSMUSG00000048027	Rgmb	1110059F19Rik|DRAGON	repulsive guidance molecule family member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-90156159-3	chr3	90156063	90156263	+	834.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029937, intron 15 of 39)	MTE2a|LTR|ERVL-MaLR	52031.0	NM_029937	77595.0	Mm.159949	NM_029937	ENSMUSG00000027939	Nup210l	4930548O11Rik|R26-EGFP|Tg(Gt(ROSA)26Sor-EGFP)130910Eps	nucleoporin 210-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-63431431-2	chr10	63431331	63431531	+	893.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177612, intron 1 of 17)	ORR1D1|LTR|ERVL-MaLR	1333.0	NM_177612	216033.0	Mm.444692	NM_177612	ENSMUSG00000060843	Ctnna3	4930429L08Rik|4933408A16|Catna3|Vr22	catenin (cadherin associated protein), alpha 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-78067447-2	chr10	78067347	78067547	+	808.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1921.0	NM_015790	50723.0	Mm.17819	NM_015790	ENSMUSG00000000732	Icosl	AU044799|B7-H2|B7RP-1|B7h|BG071784|GI50|GL50|GL50-B|ICOS-L|Icoslg|LICOS|Ly115l|mKIAA0653	icos ligand	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85598244-4	chr12	85598131	85598331	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001205052)	promoter-TSS (NM_001205052)	-874.0	NM_001205052	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	2.72827283179125	2.76775245133509	2.31690480982147	2.25467405999988	2.82325516591915	2.88960289583797	2.33425054836044	2.26572964253127	0.15121175640552	0.84157815392684	0.998431161219273
Merged-chr7-102248735-4	chr7	102248630	102248830	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019566, intron 1 of 1)	intron (NM_019566, intron 1 of 1)	1388.0	NM_019566	56212.0	Mm.259795	NM_019566	ENSMUSG00000073982	Rhog	2810426G09Rik|Arhg|Sid10750	ras homolog family member G	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-68234774-4	chr18	68234668	68234868	+	892.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357444, intron 1 of 3)	intron (NM_001357444, intron 1 of 3)	6822.0	NM_001357444	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-128472712-2	chr1	128472612	128472812	+	671.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55296.0	NM_145507	226414.0	Mm.28693	NM_145507	ENSMUSG00000026356	Dars	5730439G15Rik	aspartyl-tRNA synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-94692966-2	chr16	94692866	94693066	+	606.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001347731, exon 11 of 11)	3' UTR (NM_001347731, exon 11 of 11)	81547.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-40319808-2	chr9	40319708	40319908	+	653.299988	f1_balb.idr|f1_c57bl6.idr	intron (NR_151734, intron 3 of 18)	intron (NR_151734, intron 3 of 18)	1515.0	NM_001357622	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-142435726-4	chr7	142435619	142435819	+	801.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285858, intron 1 of 8)	intron (NM_001285858, intron 1 of 8)	742.0	NM_018802	55925.0	Mm.213002	NM_018802	ENSMUSG00000031098	Syt8	-	synaptotagmin VIII	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-54414261-1	chr14	54414161	54414361	+	579.0	f1_c57bl6.idr	intron (NM_011405, intron 2 of 11)	intron (NM_011405, intron 2 of 11)	3418.0	NM_001253679	20540.0	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	1.26106631289386	0.860639539484536	1.22549133030524	1.83114507824314	1.2717275447874	1.69242911040736	0.849614182800664	1.33848302117006	-0.102633356285244	0.938071429587435	0.998431161219273
Merged-chr15-79467834-1	chr15	79467734	79467934	+	1000.0	f1_balb.idr	Intergenic	Intergenic	-25691.0	NM_001359863	27373.0	Mm.30199	NM_013767	ENSMUSG00000022433	Csnk1e	AI426939|AI551861|AW457082|CK1epsilon|CKIe|KC1epsilon|tau	casein kinase 1, epsilon	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-23433055-3	chr13	23432957	23433157	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	tRNA-Tyr-TAC|tRNA|tRNA	-2040.0	NR_015492	320842.0	Mm.487476	NR_015492	ENSMUSG00000085024	C230035I16Rik	-	RIKEN cDNA C230035I16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-89988992-3	chr9	89988873	89989073	+	811.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357743, intron 13 of 26)	intron (NM_001357743, intron 13 of 26)	-65294.0	NM_007801	13036.0	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-81176277-4	chr13	81176187	81176387	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 86 of 89)	intron (NM_054053, intron 86 of 89)	212213.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46589335-3	chr19	46589233	46589433	+	978.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053196, intron 6 of 11)	intron (NM_053196, intron 6 of 11)	-9773.0	NM_001177812	226178.0	Mm.329895	NM_146099	ENSMUSG00000047731	Wbp1l	D19Wsu162e|Opal1	WW domain binding protein 1 like	protein-coding	3.09573598022612	3.46904242295868	2.92510042653231	3.5707940240453	2.61003645072993	3.24894668813781	1.83510029019921	1.77548339860948	-1.38564028590633	0.0608655411973398	0.365132381642842
Merged-chr2-91328699-4	chr2	91328544	91328744	+	916.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175123, intron 3 of 8)	intron (NM_175123, intron 3 of 8)	63529.0	NM_023854	77038.0	Mm.43636	NM_023854	ENSMUSG00000027255	Arfgap2	2310032E02Rik|Zfp289	ADP-ribosylation factor GTPase activating protein 2	protein-coding	2.79149212004249	3.02222855871972	3.9114499741857	3.49102039779825	2.92127863010253	3.38887793919096	4.04820652522056	3.3529900845635	0.176792420642636	0.766741089910406	0.998431161219273
Merged-chr16-49840226-4	chr16	49840119	49840319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15435.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-38730441-2	chr16	38730341	38730541	+	562.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11818.0	NR_152434	56375.0	Mm.182377	NM_019804	ENSMUSG00000022793	B4galt4	9130402O08Rik|B4galt-IV|b4Gal-T4|beta4Gal-T4|beta4GalT-IV	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-107466594-1	chr11	107466494	107466694	+	662.0	f0_balb.idr	intron (NR_153311, intron 1 of 9)	intron (NR_153311, intron 1 of 9)	4126.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	0.993662181803697	0.356408146923359	0.127051097625004	1.09663106513445	0.111709475987447	0.136965794153588	0.128845901777416	0.121843268543894	-4.35310252047408	0.0321172952955115	1
Merged-chr6-32610885-4	chr6	32610784	32610984	+	904.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22692.0	NM_175750	243743.0	Mm.444029	NM_175750	ENSMUSG00000029765	Plxna4	9330117B14|Plxa4|mKIAA1550	plexin A4	protein-coding	4.00495269959974	3.29793110862434	3.18348653404811	4.2421607421495	3.22472402630384	2.59892120409959	4.04577752947737	3.20885142205267	-0.583804040328759	0.321317050609956	0.823869918767258
Merged-chr15-61211208-2	chr15	61211108	61211308	+	626.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	-289938.0	NM_001081067	117586.0	Mm.291499	NM_001081067	ENSMUSG00000022347	A1bg	C44	alpha-1-B glycoprotein	protein-coding	-1.50874880059862	-1.47511716453926	-1.4852876488768	-1.49364198752927	-1.50638792193216	-0.992828729615453	-1.48298527415345	-1.4921465649048	2.3185461113984	0.50391666537493	1
Merged-chr1-58723829-1	chr1	58723729	58723929	+	880.3333130000001	f0_balb.idr	intron (NM_001355056, intron 1 of 8)	intron (NM_001355056, intron 1 of 8)	-6723.0	NM_001293805	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-57100158-2	chr17	57100058	57100258	+	734.833374	f1_balb.idr|f1_c57bl6.idr	intron (NR_033508, intron 3 of 3)	intron (NR_033508, intron 3 of 3)	-5227.0	NM_009404	21950.0	Mm.41171	NM_009404	ENSMUSG00000035678	Tnfsf9	4-1BB-L|4-1BBL|AI848817|Cd137l|Ly63l	tumor necrosis factor (ligand) superfamily, member 9	protein-coding	-2.05752322593321	-2.15521190974092	-2.16307242109104	-2.16952927915413	-2.17938029103484	-2.15350850414045	-2.16129297361887	-2.16837350464794	-0.683654500252594	0.846597994014493	1
Merged-chr3-86103842-3	chr3	86103797	86103997	+	663.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001082414, intron 4 of 14)	RLTR20A4|LTR|ERVK	19463.0	NM_001082414	27059.0	Mm.2454	NM_012059	ENSMUSG00000028082	Sh3d19	AW011754|Kryn	SH3 domain protein D19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-16334497-3	chr2	16334395	16334595	+	698.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21809.0	NM_026162	67448.0	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-106760849-1	chr1	106760749	106760949	+	541.0	f1_balb.idr	Intergenic	Intergenic	-1107.0	NM_001316750	70750.0	Mm.458911	NM_027534	ENSMUSG00000009905	Kdsr	6330410P18Rik|9430079B08Rik|Fvt1	3-ketodihydrosphingosine reductase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-10469316-4	chr10	10469230	10469430	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127353, intron 1 of 36)	intron (NM_001127353, intron 1 of 36)	2984.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	4.58461791400482	4.99950493770113	3.67249642076554	3.7310193172607	4.01599171695314	3.27061049845208	4.2243332301877	5.3796477265336	0.113458425870368	0.829987050670394	0.998431161219273
Merged-chr16-27388410-4	chr16	27388319	27388519	+	986.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026202)	promoter-TSS (NM_026202)	-537.0	NM_001025615	67501.0	Mm.258985	NM_026202	ENSMUSG00000038127	Ccdc50	C3orf6	coiled-coil domain containing 50	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-95957411-4	chr13	95957319	95957519	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65497.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-59042884-4	chr19	59042780	59042980	+	983.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114312, intron 3 of 16)	intron (NM_001114312, intron 3 of 16)	33189.0	NM_175172	71653.0	Mm.37338	NM_175172	ENSMUSG00000041362	Shtn1	4930506M07Rik|Shootin1|mKIAA1598	shootin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-64096296-2	chr9	64096196	64096396	+	720.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15535.0	NR_040743	76814.0	Mm.243771	NR_040743		Scarletltr	2600006L11Rik	Scarletltr, erythroid developmental long intergenic non-protein coding transcript	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124874531-4	chr6	124874389	124874589	+	977.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013488, intron 3 of 9)	MTE2b|LTR|ERVL-MaLR	-10506.0	NM_001355257	14788.0	Mm.2514	NM_013533	ENSMUSG00000038390	Gpr162	A-2|BC031437|Grca	G protein-coupled receptor 162	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98796562-4	chr11	98796491	98796691	+	740.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001361932, exon 1 of 3)	exon (NM_001361932, exon 1 of 3)	1075.0	NM_028722	74026.0	Mm.258352	NM_028722	ENSMUSG00000052915	Msl1	2810017F12Rik|4121402D02Rik|4930463F05Rik|AA682082|Msl-1	male specific lethal 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171059433-4	chr1	171059307	171059507	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010188)	promoter-TSS (NM_010188)	-4.0	NM_010188	14131.0	Mm.22119	NM_010188	ENSMUSG00000059498	Fcgr3	CD16	Fc receptor, IgG, low affinity III	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-21657536-1	chr14	21657436	21657636	+	999.0	f0_balb.idr	intron (NM_017479, intron 12 of 16)	intron (NM_017479, intron 12 of 16)	57040.0	NM_001013826	435391.0	Mm.295860	NM_001013826	ENSMUSG00000063821	Dupd1	EG435391	dual specificity phosphatase and pro isomerase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-27625919-2	chr3	27625819	27626019	+	851.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356953, intron 3 of 26)	intron (NM_001356953, intron 3 of 26)	-40924.0	NR_037275	100526525.0		NR_037275	ENSMUSG00000092695	Mir3092	mir-3092|mmu-mir-3092	microRNA 3092	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-20450496-2	chr17	20450396	20450596	+	608.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3C|LINE|L1	30740.0	NM_001104570	627805.0	Mm.469853	NM_001104570	ENSMUSG00000091805	Vmn2r108	EG627805	vomeronasal 2, receptor 108	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25704907-4	chr7	25704818	25705018	+	959.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011577, exon 7 of 7)	exon (NM_011577, exon 7 of 7)	14135.0	NM_028771	52132.0	Mm.278798	NM_028771	ENSMUSG00000002608	Ccdc97	1200014H14Rik|2810446P04Rik|AA545218|D7Ertd462e	coiled-coil domain containing 97	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-123558843-2	chr4	123558743	123558943	+	741.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199137, intron 1 of 92)	B3|SINE|B2	-57577.0	NR_105824	102465214.0		NR_105824	ENSMUSG00000099005	Mir6398	Gm27657|mmu-mir-6398	microRNA 6398	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-25602140-4	chr8	25602032	25602232	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001308482)	promoter-TSS (NM_001308482)	-152.0	NM_001001735	234135.0	Mm.217337	NM_001001735	ENSMUSG00000054823	Nsd3	6720429E03|A530023P05|AI528490|WHISTLE|Whsc1l1	nuclear receptor binding SET domain protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-84670752-4	chr2	84670654	84670854	+	980.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001037279)	promoter-TSS (NM_001037279)	-46.0	NM_001037279	72657.0	Mm.259293	NM_001033166	ENSMUSG00000076437	Selenoh	2700094K13Rik|Selh	selenoprotein H	protein-coding	-1.84456824087626	-1.81369603968745	-1.82303204814395	-1.83070092346192	-1.84240106943552	-1.51787681909439	-1.82091858046888	-1.82932819844659	1.64481029852639	0.639921510788462	1
Merged-chr19-46598943-4	chr19	46598837	46599037	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177812)	promoter-TSS (NM_001177812)	-169.0	NM_001177812	226178.0	Mm.329895	NM_146099	ENSMUSG00000047731	Wbp1l	D19Wsu162e|Opal1	WW domain binding protein 1 like	protein-coding	5.64461629190473	5.80283041174513	5.76434111831274	5.84909552684262	5.64305745585625	6.03369756861232	5.56774696908747	5.78972379272574	9.45447877738632e-05	0.999692032775834	0.999914272987644
Merged-chr5-138996125-6	chr5	138995959	138996159	+	993.194458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG-11694	-1106.0	NM_008808	18590.0	Mm.2675	NM_008808	ENSMUSG00000025856	Pdgfa	-	platelet derived growth factor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-38339975-2	chr18	38339875	38340075	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011937)	promoter-TSS (NM_011937)	-982.0	NM_011937	26384.0	Mm.22374	NM_011937	ENSMUSG00000052102	Gnpda1	GNPDA|Gnp1|Gnpi|oscillin	glucosamine-6-phosphate deaminase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45945573-1	chr7	45945473	45945673	+	565.0	f1_balb.idr	intron (NM_001033243, intron 9 of 12)	MTB_Mm|LTR|ERVL-MaLR	17175.0	NM_001033243	211535.0	Mm.227539	NM_001033243	ENSMUSG00000040189	Ccdc114	-	coiled-coil domain containing 114	protein-coding	0.403245447008177	1.18802500098095	0.420746589417828	0.414193596341989	1.0141629769531	0.960934175568376	0.422614325253476	0.874620816953472	0.896532129980154	0.619435112758667	1
Merged-chr12-110704930-2	chr12	110704830	110705030	+	771.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8535.0	NM_010480	15519.0	Mm.1843	NM_010480	ENSMUSG00000021270	Hsp90aa1	86kDa|89kDa|AL024080|AL024147|Hsp86-1|Hsp89|Hsp90|Hspca|hsp4	heat shock protein 90, alpha (cytosolic), class A member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-73045178-2	chr11	73045078	73045278	+	726.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-2689.0	NM_025818	66874.0	Mm.41903	NM_025818	ENSMUSG00000020783	Ncbp3	1200014J11Rik|C130061O14Rik|C78393	nuclear cap binding subunit 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28689499-2	chr17	28689399	28689599	+	764.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290320, intron 1 of 19)	intron (NM_001290320, intron 1 of 19)	488.0	NM_001290320	224661.0		NM_146076	ENSMUSG00000036196	Slc26a8	-	solute carrier family 26, member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6891311-4	chr19	6891208	6891408	+	922.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6B|LTR|ERVK	-18390.0	NM_001166370	67674.0	Mm.318804	NM_026306	ENSMUSG00000038812	Trmt112	0610038D11Rik|Trm112p	tRNA methyltransferase 11-2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5661671-4	chr19	5661542	5661742	+	969.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164480, intron 1 of 16)	intron (NM_001164480, intron 1 of 16)	2065.0	NM_001164482	20469.0	Mm.3072	NM_011379	ENSMUSG00000056917	Sipa1	Spa1	signal-induced proliferation associated gene 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91012051-4	chr16	91011941	91012141	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164483)	promoter-TSS (NM_001164483)	-733.0	NM_001164483	104015.0	Mm.187079	NM_001045515	ENSMUSG00000022973	Synj1	A930006D20Rik|AA675315|mKIAA0910	synaptojanin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-30674129-4	chr13	30674033	30674233	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134068, intron 3 of 7)	intron (NM_134068, intron 3 of 7)	14074.0	NM_134068	105352.0	Mm.289646	NM_134068	ENSMUSG00000069255	Dusp22	JKAP|JSP1|LMW-DSP2|MKPX	dual specificity phosphatase 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-104434519-4	chr14	104434400	104434600	+	653.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33499.0	NM_011143	18996.0	Mm.246550	NM_011143	ENSMUSG00000048349	Pou4f1	Brn-3|Brn-3.0|Brn3|Brn3.0|Brn3a|E130119J07Rik	POU domain, class 4, transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-11033071-2	chr4	11032971	11033171	+	585.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25452.0	NM_175175	71801.0	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-103058309-4	chr3	103058197	103058397	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010937)	promoter-TSS (NM_010937)	12.0	NM_010937	18176.0	Mm.400954	NM_010937	ENSMUSG00000027852	Nras	AV095280|N-ras	neuroblastoma ras oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124050582-4	chr5	124050482	124050682	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18322.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	5.38885906225426	6.29083956430685	5.64287195906623	5.8327928582316	5.51894001462836	6.34522382539838	5.17844771872575	6.20209328203412	0.0724303147178758	0.812473700243967	0.998431161219273
Merged-chr11-97900976-2	chr11	97900885	97901085	+	695.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16831.0	NM_001081435	72973.0	Mm.245939	NM_001081435	ENSMUSG00000070336	Fbxo47	2900052P03Rik|Gm1562	F-box protein 47	protein-coding	-0.343424250163485	-0.326314395263627	-0.331874950156467	0.693024191950795	0.0865603895581708	-0.325066783398596	-0.330644866429937	-0.335438034352097	-1.74998231756773	0.49468333797698	1
Merged-chr11-78213281-4	chr11	78213176	78213376	+	987.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009297, exon 29 of 37)	exon (NM_009297, exon 29 of 37)	19884.0	NM_001045516	216974.0	Mm.50974	NM_001045516	ENSMUSG00000044122	Proca1	4933404M19Rik	protein interacting with cyclin A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-100461192-4	chr15	100461079	100461279	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-7832.0	NM_001357983	68614.0	Mm.275272	NM_134093	ENSMUSG00000037353	Letmd1	1110019O13Rik|AI593524|BB130465|BB235638|HCCR-2|HCCR1|MCC-32|Mccr	LETM1 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-60740221-1	chr13	60740121	60740321	+	1000.0	f1_c57bl6.idr	intron (NM_134062, intron 19 of 26)	intron (NM_134062, intron 19 of 26)	46143.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-9125380-4	chr13	9125271	9125471	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172585, intron 3 of 17)	intron (NM_172585, intron 3 of 17)	31490.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-94412749-3	chr11	94412621	94412821	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009783, intron 33 of 35)	intron (NM_009783, intron 33 of 35)	-19745.0	NM_029600	76408.0	Mm.23942	NM_029600	ENSMUSG00000020865	Abcc3	1700019L09Rik|ABC31|MLP2|MOAT-D|MRP3	ATP-binding cassette, sub-family C (CFTR/MRP), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-107594048-4	chr7	107593952	107594152	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008905)	promoter-TSS (NM_008905)	-999.0	NM_008905	19024.0	Mm.2817	NM_008905	ENSMUSG00000036528	Ppfibp2	Cclp1	PTPRF interacting protein, binding protein 2 (liprin beta 2)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-107955932-1	chr13	107955832	107956032	+	721.0	f0_balb.idr	Intergenic	Intergenic	-65868.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-113796329-2	chr13	113796229	113796429	+	578.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172595, intron 1 of 4)	intron (NM_172595, intron 1 of 4)	1821.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-65351077-2	chr14	65350977	65351177	+	635.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-7599.0	NM_199029	380912.0	Mm.270087	NM_199029	ENSMUSG00000034522	Zfp395	BC053701|Gm910	zinc finger protein 395	protein-coding	0.178479585027123	0.201967302950233	0.19433728986043	0.963521822311039	0.179963620762201	0.203679022648227	0.698758273551406	0.972602227485798	0.660581974462151	0.750078534057744	1
Merged-chr17-80789921-2	chr17	80789821	80790021	+	822.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61896.0	NM_001290345	225028.0	Mm.311948	NM_001081357	ENSMUSG00000024242	Map4k3	4833416M01Rik|4833416M07Rik|9530052P13Rik|Glk|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1	mitogen-activated protein kinase kinase kinase kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-14996219-2	chr8	14996122	14996322	+	712.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037736, intron 26 of 27)	intron (NM_001037736, intron 26 of 27)	-14803.0	NM_029116	74901.0	Mm.46675	NM_029116	ENSMUSG00000055675	Kbtbd11	2900016B01Rik|4930465M17Rik|mKIAA0711	kelch repeat and BTB (POZ) domain containing 11	protein-coding	-0.475346413565445	-0.7134061209338	-0.716215844213131	-0.321820978158391	-0.4693982409331	-0.712770323923554	-0.715597666515307	-0.717995632351521	-1.25911859464901	0.65352083472096	1
Merged-chr2-128766884-1	chr2	128766784	128766984	+	862.0	f1_balb.idr	intron (NM_008587, intron 8 of 18)	B3|SINE|B2	-51419.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	2.22736712914531	1.34167144981355	1.51647766002532	1.4890056456522	2.92024186120389	2.06867066474419	1.85911131030512	2.26998262605174	1.91395857409284	0.0648983951428395	0.381238020685694
Merged-chr11-120796450-4	chr11	120796349	120796549	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026824)	promoter-TSS (NM_026824)	-54.0	NM_026824	68730.0	Mm.180622	NM_026824	ENSMUSG00000025155	Dus1l	1110032N12Rik	dihydrouridine synthase 1-like (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-73533090-4	chr7	73532946	73533146	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081345, intron 2 of 38)	intron (NM_001081345, intron 2 of 38)	8700.0	NM_001081345	244059.0	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-29571266-4	chr19	29571161	29571361	+	882.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081319, intron 8 of 25)	MTEb|LTR|ERVL-MaLR	48979.0	NM_001081319	226089.0	Mm.353838	NM_177641	ENSMUSG00000038658	Ric1	C030046E11Rik|C130057E09Rik|Kiaa1432	RAB6A GEF complex partner 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-89227963-4	chr9	89227849	89228049	+	899.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359993, intron 2 of 2)	URR1B|DNA|hAT-Charlie	16565.0	NM_001359993	107885.0	Mm.486274	NM_026829	ENSMUSG00000066442	Mthfs	1110034I12Rik|2310020H23Rik|AI119695	5, 10-methenyltetrahydrofolate synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-159992446-4	chr2	159992356	159992556	+	902.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24197.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47760205-4	chr17	47760108	47760308	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161723, intron 1 of 8)	intron (NM_001161723, intron 1 of 8)	22277.0	NM_001161723	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	2.51744626205426	1.5244484053334	3.19860212829351	3.37338183787902	2.42893268197528	2.07278578242611	3.55295921913646	2.55926870393359	-0.0903681408559706	0.91397460512792	0.998431161219273
Merged-chr1-184535807-4	chr1	184535678	184535878	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040472, intron 2 of 5)	intron (NR_040472, intron 2 of 5)	21913.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-10900410-2	chr8	10900310	10900510	+	579.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_102285, exon 2 of 3)	non-coding (NR_102285, exon 2 of 3)	488.0	NR_102285	71624.0	Mm.139075	NR_102285	ENSMUSG00000109089	4833411C07Rik	-	RIKEN cDNA 4833411C07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-62866859-4	chr11	62866772	62866972	+	951.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033669, intron 8 of 12)	MIR|SINE|MIR	-12583.0	NM_001356520	67510.0	Mm.9806	NM_026210	ENSMUSG00000014177	Tvp23b	1810036I24Rik|Fam18b|Fam18b1	trans-golgi network vesicle protein 23B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-15977698-2	chr7	15977598	15977798	+	582.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081418, intron 9 of 13)	B1_Mur4|SINE|Alu	-10163.0	NM_153068	259300.0	Mm.138215	NM_153068	ENSMUSG00000074364	Ehd2	BC027084|C130052H20Rik	EH-domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-163820744-2	chr2	163820644	163820844	+	544.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016873)	promoter-TSS (NM_016873)	-90.0	NM_016873	22403.0	Mm.13828	NM_016873	ENSMUSG00000027656	Wisp2	Ccn5|Crgr4|Ctgfl|Rcop1	WNT1 inducible signaling pathway protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116136006-2	chr11	116135906	116136106	+	559.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_024177, intron 2 of 8)	RMER13A1|LTR|ERVK	2862.0	NM_024177	60441.0	Mm.29974	NM_024177	ENSMUSG00000020775	Mrpl38	1110036N21Rik|4733401F03Rik|MRP-L3|R75240|Rpml3	mitochondrial ribosomal protein L38	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-37503216-4	chr19	37503134	37503334	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37980.0	NR_131009	78640.0	Mm.234265	NR_131008		1700122C19Rik	-	RIKEN cDNA 1700122C19 gene	ncRNA	4.45997854295682	3.13712447828685	3.02409347086879	3.94295232059268	3.59659410996919	3.61366978500612	4.192252655193	3.90286025005062	0.0759199753483528	0.887885911070742	0.998431161219273
Merged-chr10-19956750-2	chr10	19956650	19956850	+	863.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008580, intron 1 of 29)	intron (NM_008580, intron 1 of 29)	22224.0	NM_008580	26408.0	Mm.6595	NM_008580	ENSMUSG00000071369	Map3k5	7420452D20Rik|ASK|ASK1|MAPKKK5|Mekk5	mitogen-activated protein kinase kinase kinase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-110631528-3	chr7	110631432	110631632	+	797.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3875.0	NM_009627	11535.0	Mm.1408	NM_009627	ENSMUSG00000030790	Adm	AM	adrenomedullin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124425189-2	chr5	124425089	124425289	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081203, intron 1 of 31)	CpG	413.0	NM_001359979	243272.0	Mm.23879	NM_145631	ENSMUSG00000038095	Sbno1	9330180L10Rik|AI849128|AW557836|BC021875|Sbno|mSno1|sno	strawberry notch 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-155250827-2	chr4	155250727	155250927	+	690.166687	f1_balb.idr|f1_c57bl6.idr	exon (NM_001190445, exon 3 of 4)	exon (NM_001190445, exon 3 of 4)	861.0	NR_033802	67513.0	Mm.10374	NM_001190445	ENSMUSG00000073684	Faap20	2610002J02Rik	Fanconi anemia core complex associated protein 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-114458490-3	chr13	114458401	114458601	+	888.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301375, intron 1 of 5)	intron (NM_001301375, intron 1 of 5)	450.0	NM_001301373	14313.0	Mm.4913	NM_008046	ENSMUSG00000021765	Fst	AL033346|FS	follistatin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35394571-3	chr17	35394447	35394647	+	916.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_051981, exon 2 of 3)	non-coding (NR_051981, exon 2 of 3)	448.0	NR_051981	15016.0	Mm.439648	NR_051981	ENSMUSG00000055413	H2-Q5	H-2Q5|Qa-5|Qa5|Qat-5	histocompatibility 2, Q region locus 5	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133197065-3	chr4	133196977	133197177	+	703.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_153423, exon 9 of 9)	3' UTR (NM_153423, exon 9 of 9)	1422.0	NR_105984	102466215.0		NR_105984	ENSMUSG00000099202	Mir7017	Gm27945|mmu-mir-7017	microRNA 7017	ncRNA	0.575733482800324	0.454158563496069	1.01823307160726	0.60648249983229	1.00866143595322	0.653558191608843	1.029655968314	0.44178550631493	0.704332524118711	0.666250224478531	1
Merged-chr10-25219376-2	chr10	25219276	25219476	+	949.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_018747, intron 7 of 7)	intron (NM_018747, intron 7 of 7)	-19206.0	NM_001347460	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-36987695-4	chr16	36987585	36987785	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358217, intron 1 of 3)	intron (NM_001358217, intron 1 of 3)	2782.0	NM_001358217	207215.0	Mm.211899	NM_001037321	ENSMUSG00000047746	Fbxo40	9830003A13Rik|mKIAA1195	F-box protein 40	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-76622284-3	chr11	76622182	76622382	+	886.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-44543.0	NM_198894	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-21983218-3	chr3	21983103	21983303	+	915.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	-93449.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-128232518-1	chr7	128232418	128232618	+	545.0	f1_c57bl6.idr	Intergenic	RMER21A|LTR|ERV1	-4839.0	NM_146205	233912.0	Mm.475117	NM_146205	ENSMUSG00000042178	Armc5	AW049683|BC032200	armadillo repeat containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-32521925-3	chr6	32521836	32522036	+	813.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175750, intron 1 of 31)	MTD|LTR|ERVL-MaLR	10795.0	NR_040277	319849.0	Mm.440860	NR_040277	ENSMUSG00000086763	Plxna4os1	B230378P21Rik	plexin A4, opposite strand 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-84209949-2	chr15	84209826	84210026	+	548.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178614, intron 12 of 14)	intron (NM_178614, intron 12 of 14)	17693.0	NM_178614	68653.0	Mm.290725	NM_178614	ENSMUSG00000022437	Samm50	1110030L07Rik	SAMM50 sorting and assembly machinery component	protein-coding	0.885842686548662	0.609296491864023	1.54718069583925	0.588873736967847	0.894044257784382	0.611857175447258	1.47077235298865	1.08421772846987	0.306538531682156	0.844093712574514	0.998431161219273
Merged-chr13-9494298-3	chr13	9494207	9494407	+	626.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081426, intron 2 of 36)	intron (NM_001081426, intron 2 of 36)	217782.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-146824036-3	chr5	146823958	146824158	+	624.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-8832.0	NM_019647	19933.0	Mm.316592	NM_019647	ENSMUSG00000041453	Rpl21	8430440E03Rik|L21	ribosomal protein L21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46511913-2	chr19	46511813	46512013	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_053100, intron 1 of 5)	intron (NM_053100, intron 1 of 5)	10265.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30904337-2	chr7	30904237	30904437	+	670.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346084, intron 8 of 11)	intron (NM_001346084, intron 8 of 11)	9984.0	NM_001346089	17136.0	Mm.241355	NM_010758	ENSMUSG00000036634	Mag	Gma|siglec-4a	myelin-associated glycoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-45205901-1	chr2	45205801	45206001	+	644.0	f0_balb.idr	Intergenic	Intergenic	-88459.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-89051956-2	chr11	89051866	89052066	+	811.099976	f0_c57.idr|f1_c57bl6.idr	intron (NM_019505, intron 3 of 10)	L1MB8|LINE|L1	8782.0	NM_019505	56077.0	Mm.153695	NM_019505	ENSMUSG00000000276	Dgke	C87606|DAGK6|DGK	diacylglycerol kinase, epsilon	protein-coding	3.74268453881175	3.19372646849044	2.98423189270916	3.58060227833343	2.28245309818018	1.95370433425143	2.31875899969985	3.5389623051661	-1.21417103167406	0.087172026087273	0.453682751154613
Merged-chr5-147511616-2	chr5	147511516	147511716	+	856.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359433, intron 6 of 19)	intron (NM_001359433, intron 6 of 19)	81460.0	NM_028291	72587.0	Mm.320469	NM_028291	ENSMUSG00000029647	Pan3	2700050F09Rik|A430027N15Rik|AU014670	PAN3 poly(A) specific ribonuclease subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-58025428-2	chr5	58025328	58025528	+	595.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310608, intron 3 of 3)	intron (NM_001310608, intron 3 of 3)	307347.0	NM_018764	54216.0	Mm.332387	NM_018764	ENSMUSG00000029108	Pcdh7	-	protocadherin 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-155818564-2	chr2	155818400	155818600	+	932.666626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_010808)	TTS (NM_010808)	703.0	NR_015528	613262.0	Mm.330707	NR_015528	ENSMUSG00000074649	BC029722	-	cDNA sequence BC029722	ncRNA	1.56643969183438	2.92842950752433	2.00405323527005	1.80614445095825	1.98133483546711	1.93509989920534	1.69999609751585	2.08300597751788	-0.672026368113489	0.48063881196798	0.929014788850578
Merged-chr1-180519753-2	chr1	180519653	180519853	+	597.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36249.0	NM_001081227	381310.0	Mm.44791	NM_001081227	ENSMUSG00000053963	Stum	6330403A02Rik|Gm10001|R75555	mechanosensory transduction mediator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-154687752-3	chr2	154687646	154687846	+	640.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029362, intron 1 of 4)	intron (NM_029362, intron 1 of 4)	30720.0	NM_029362	75608.0	Mm.262480	NM_029362	ENSMUSG00000038467	Chmp4b	2010012F05Rik|C76846|Snf7-2	charged multivesicular body protein 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-90509145-4	chr3	90509037	90509237	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293777, intron 1 of 5)	C-rich|Low_complexity|Low_complexity	361.0	NM_001293776	66511.0	Mm.154136	NM_023215	ENSMUSG00000001017	Chtop	2500003M10Rik|Fop|Srag	chromatin target of PRMT1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-101999770-3	chr5	101999693	101999893	+	868.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 3 of 66)	intron (NM_172882, intron 3 of 66)	70128.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	-0.380761136835425	-0.359485953087823	-0.366338078346917	-0.37170166502425	-0.0368993917847235	-0.357956468237607	0.903790982397858	-0.370759699710257	4.10171584578374	0.0863485595017916	1
Merged-chr17-56996774-2	chr17	56996674	56996874	+	882.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025538)	promoter-TSS (NM_025538)	-565.0	NM_025538	66400.0	Mm.196150	NM_025538	ENSMUSG00000002661	Alkbh7	2310045B01Rik|2510008E23Rik|Abh7|Spata11	alkB homolog 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-105069400-2	chr13	105069300	105069500	+	570.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12722.0	NM_025751	66763.0	Mm.109093	NM_025751	ENSMUSG00000021718	4933425L06Rik	-	RIKEN cDNA 4933425L06 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-122935518-1	chr14	122935418	122935618	+	544.0	f1_balb.idr	intron (NR_153663, intron 10 of 16)	intron (NR_153663, intron 10 of 16)	-22353.0	NM_145466	223267.0	Mm.379358	NM_145466	ENSMUSG00000041625	Ggact	A2ld1	gamma-glutamylamine cyclotransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101303584-2	chr7	101303484	101303684	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-1496.0	NR_152152	73683.0	Mm.275744	NM_001111111	ENSMUSG00000047767	Atg16l2	2410118P20Rik	autophagy related 16-like 2 (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-80800915-3	chr15	80800822	80801022	+	927.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177124, intron 1 of 21)	intron (NM_177124, intron 1 of 21)	2312.0	NM_177124	213988.0	Mm.131328	NM_144812	ENSMUSG00000047888	Tnrc6b	2700090M07Rik|A730065C02Rik|AI848765|D230019K20Rik	trinucleotide repeat containing 6b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-53421703-1	chr10	53421603	53421803	+	844.0	f0_balb.idr	intron (NR_152767, intron 2 of 2)	intron (NR_152767, intron 2 of 2)	11821.0	NR_152767	102640074.0	Mm.412957	NR_152767		Gm36229	-	predicted gene, 36229	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-29203725-2	chr17	29203625	29203825	+	567.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360239, intron 7 of 21)	intron (NM_001360239, intron 7 of 21)	34065.0	NM_153166	240058.0	Mm.39905	NM_153166	ENSMUSG00000024008	Cpne5	A830083G22Rik	copine V	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-122715524-2	chr10	122715428	122715628	+	646.5	f0_balb.idr|f1_balb.idr	intron (NM_001110218, intron 1 of 9)	URR1B|DNA|hAT-Charlie	36213.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	1.35834751823895	1.96037930274927	1.2752068193615	1.83251853821252	1.36867727926249	2.09220609945479	2.20939413437902	1.02996742604467	0.395560641452031	0.729657031995215	0.998431161219273
Merged-chr1-170162483-2	chr1	170162383	170162583	+	614.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133806, intron 2 of 10)	intron (NM_133806, intron 2 of 10)	12481.0	NM_133806	107652.0	Mm.27969	NM_133806	ENSMUSG00000026670	Uap1	AA420407|AA437972|AGX-1|AGX-2|AGX1|AgX|ESTM38|SPAG2	UDP-N-acetylglucosamine pyrophosphorylase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19309649-4	chr7	19309500	19309700	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_008036, exon 1 of 4)	5' UTR (NM_008036, exon 1 of 4)	445.0	NM_008036	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-116104545-2	chr9	116104445	116104645	+	800.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029575, intron 5 of 6)	intron (NM_029575, intron 5 of 6)	70818.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-25479968-4	chr14	25479869	25480069	+	912.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	20784.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	3.29972781402028	2.51026609590586	2.80301034256773	3.00194367733394	3.09099639092038	2.17163642502968	2.58624334266756	2.83956584021587	-0.410518906507502	0.560157124794812	0.960321604678676
Merged-chr9-78448243-4	chr9	78448159	78448359	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026658)	promoter-TSS (NM_026658)	49.0	NM_026658	68291.0	Mm.291779	NM_026658	ENSMUSG00000032342	Mto1	2310039H01Rik|5730419A02Rik	mitochondrial tRNA translation optimization 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-36349148-7	chr19	36348941	36349141	+	990.693848	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-30026.0	NM_029508	76073.0	Mm.259180	NM_029508	ENSMUSG00000024805	Pcgf5	0610009F02Rik|1110054A01Rik|5830406C17Rik|5830443C21Rik|9530023M17Rik|AI324127	polycomb group ring finger 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-54680238-3	chr3	54680153	54680353	+	631.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12562.0	NR_152185	56790.0	Mm.486375	NM_019995	ENSMUSG00000027751	Supt20	AA667204|AI450544|D3Ertd300e|Fam48a|Supt20h|p38IP	suppressor of Ty 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-93889795-4	chr10	93889652	93889852	+	990.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_019648, exon 2 of 12)	5' UTR (NM_019648, exon 2 of 12)	1450.0	NM_019648	56307.0	Mm.289329	NM_019648	ENSMUSG00000036112	Metap2	4930584B20Rik|A930035J23Rik|AI047573|AL024412|AU014659|Amp2|Mnpep|p67|p67eIF2	methionine aminopeptidase 2	protein-coding	3.01979078469912	2.41810921621109	2.6740117832399	3.12190053023608	2.16199686177749	1.40524736319799	1.36554567730655	2.50955161577433	-1.87658612537251	0.0364524967458163	0.271036120952739
Merged-chr8-90876550-4	chr8	90876451	90876651	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177224, intron 2 of 39)	intron (NM_177224, intron 2 of 39)	47716.0	NM_177224	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	4.03176368201691	2.40802736728605	4.14459446882708	3.73448451884168	3.57353522252173	4.06687086504524	4.54650612735513	2.77679530509323	0.218039945489473	0.715968243206526	0.998431161219273
Merged-chr7-31125538-5	chr7	31125361	31125561	+	784.11499	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011322, intron 1 of 5)	intron (NM_011322, intron 1 of 5)	1562.0	NM_011322	20266.0	Mm.1418	NM_011322	ENSMUSG00000019194	Scn1b	-	sodium channel, voltage-gated, type I, beta	protein-coding	0.295394553984972	0.162645465148509	0.155617430485232	0.992704132139862	0.434445351106731	0.822056715000689	0.157171035700537	0.151120647242482	-0.221050547062415	0.91095362000496	1
Merged-chr11-101278988-4	chr11	101278871	101279071	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026618)	promoter-TSS (NM_026618)	-23.0	NM_026618	52469.0	Mm.52	NM_026618	ENSMUSG00000017188	Coa3	1810033A19Rik|Ccdc56|D11Ertd99e|HSPC009	cytochrome C oxidase assembly factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-55552808-4	chr12	55552697	55552897	+	970.37854	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR44-int|LTR|ERVK	-12408.0	NM_001277340	79459.0	Mm.392781	NM_001277340	ENSMUSG00000063129	Aldoart2	4933425L11Rik|Aldo1-ps1|Aldoa-ps1	aldolase 1 A, retrogene 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-5845361-4	chr13	5845247	5845447	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12745.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141731977-4	chr4	141731888	141732088	+	834.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8569.0	NM_001017966	68817.0	Mm.393721	NM_001017966	ENSMUSG00000078515	Ddi2	1110056G13Rik|1700027M01Rik|9130022E05Rik|AI604911|AU040698	DNA-damage inducible protein 2	protein-coding	4.07439352547145	3.44588198724183	2.59482986892146	2.14326941889924	3.08582800658474	3.87338510214549	4.19686210853293	3.15385521901495	0.556079456277033	0.401516744905393	0.886751325563677
Merged-chr8-85073457-1	chr8	85073357	85073557	+	603.0	f1_balb.idr	intron (NM_001039514, intron 3 of 8)	intron (NM_001039514, intron 3 of 8)	1700.0	NM_001039514	330817.0	Mm.193086	NM_201408	ENSMUSG00000060038	Dhps	Dhs	deoxyhypusine synthase	protein-coding	1.2136168182022	0.609156531904257	0.597943499625284	0.589184819676309	1.316624580124	1.42531403251115	0.600429816295959	1.30812416507275	1.91482354151096	0.247517908684034	0.746911435712033
Merged-chr19-4018762-2	chr19	4018662	4018862	+	754.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6007.0	NM_133666	17995.0	Mm.29842	NM_133666	ENSMUSG00000037916	Ndufv1	CI-51kD	NADH dehydrogenase (ubiquinone) flavoprotein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-8690237-4	chr4	8690123	8690323	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001277149)	promoter-TSS (NM_001277149)	-183.0	NM_001277149	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102754934-2	chr12	102754834	102755034	+	661.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001142938, intron 1 of 1)	RLTR11A2|LTR|ERVK	2876.0	NM_001142939	100859931.0	Mm.291222	NM_001142939	ENSMUSG00000041716	Gm20604	AK010878-Moap1	predicted gene 20604	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-116123769-4	chr4	116123669	116123869	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009015)	promoter-TSS (NM_009015)	-71.0	NR_131048	76786.0	Mm.373813	NR_131048	ENSMUSG00000028700	2510003B16Rik	-	RIKEN cDNA 2510003B16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-63500545-4	chr17	63500477	63500677	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015794)	promoter-TSS (NM_015794)	3.0	NM_015794	50758.0	Mm.136366	NM_015794	ENSMUSG00000023965	Fbxl17	6330576B01Rik|AI452053|BB073797|C130023C01Rik|Fbx13|Fbxo13	F-box and leucine-rich repeat protein 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131185677-2	chr1	131185577	131185777	+	731.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_018750, intron 2 of 5)	intron (NM_018750, intron 2 of 5)	14508.0	NM_001311094	54354.0	Mm.248291	NM_018750	ENSMUSG00000026430	Rassf5	1300019G20Rik|Maxp1|Nore1|Nore1A|Nore1B|Rapl	Ras association (RalGDS/AF-6) domain family member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-152806710-1	chr2	152806610	152806810	+	1000.0	f0_balb.idr	intron (NM_009743, intron 2 of 2)	L2|LINE|L2	21779.0	NR_149254	12048.0	Mm.238213	NM_009743	ENSMUSG00000007659	Bcl2l1	Bcl(X)L|Bcl-XL|Bcl2l|BclX|bcl-x|bcl2-L-1	BCL2-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-128633871-3	chr1	128633774	128633974	+	741.722229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41575.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	0.767762644678822	1.49765284153534	1.43101475387189	1.81293585326422	0.582786332765323	0.873555423212964	0.613536386079854	0.601072534239047	-4.1264887751664	0.0094582915352423	0.104751306313696
Merged-chr11-86566833-2	chr11	86566722	86566922	+	607.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199046, intron 9 of 9)	intron (NM_001199046, intron 9 of 9)	17336.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-72888558-1	chr15	72888458	72888658	+	601.0	f1_balb.idr	intron (NM_001164642, intron 16 of 16)	ORR1F|LTR|ERVL-MaLR	-78234.0	NR_002864	353342.0	Mm.440245	NR_002864	ENSMUSG00000106847	Peg13	-	paternally expressed 13	ncRNA	-0.468007660953691	-0.45380406293873	-0.458437643639693	-0.462025605837787	0.444812342398093	-0.452762175375305	-0.100694785536478	-0.461397967906136	3.72140079529681	0.154346111914658	1
Merged-chr15-25321804-4	chr15	25321715	25321915	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	91949.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-113756003-3	chr13	113755894	113756094	+	959.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-38514.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-121447320-2	chr2	121447221	121447421	+	977.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	AT_rich|Low_complexity|Low_complexity	-1877.0	NM_011354	378702.0	Mm.262252	NM_011354	ENSMUSG00000074884	Serf2	C80083|Msmac1l|m4F5rel	small EDRK-rich factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27026976-4	chr2	27026870	27027070	+	982.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177627, intron 2 of 8)	intron (NM_001177627, intron 2 of 8)	1028.0	NM_172659	227659.0	Mm.41203	NM_172659	ENSMUSG00000036067	Slc2a6	A330096C23|F630103L12Rik|Glut6|Glut9	solute carrier family 2 (facilitated glucose transporter), member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-81318960-4	chr7	81318842	81319042	+	729.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008803, intron 14 of 21)	intron (NM_008803, intron 14 of 21)	26292.0	NM_009092	20068.0	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-72788271-4	chr17	72788203	72788403	+	946.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR50|LTR|ERVL	-48325.0	NM_027166	383295.0	Mm.277533	NM_027166	ENSMUSG00000039770	Ypel5	2310076K21Rik|CGI-127	yippee like 5	protein-coding	1.69918988440359	1.28571600714159	1.5392386275173	0.801802179379617	1.14679224698382	2.23178189758248	0.820060017727639	1.02574031140193	0.253689674219603	0.848796459953093	0.998431161219273
Merged-chr1-57421325-2	chr1	57421225	57421425	+	883.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-14651.0	NM_001302963	68736.0	Mm.288490	NM_001037742	ENSMUSG00000048495	Tyw5	1110034B05Rik	tRNA-yW synthesizing protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-30013275-4	chr16	30013173	30013373	+	946.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033631, intron 1 of 2)	intron (NR_033631, intron 1 of 2)	4606.0	NR_033631	100043102.0	Mm.30797	NR_033631	ENSMUSG00000097184	4632428C04Rik	Gm4231	RIKEN cDNA 4632428C04 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-90638130-4	chr11	90638053	90638253	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011505)	promoter-TSS (NM_011505)	-31.0	NM_199008	69802.0	Mm.151940	NM_199008	ENSMUSG00000020544	Cox11	2010004I09Rik	cytochrome c oxidase assembly protein 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-39768307-3	chr15	39768156	39768356	+	850.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_022722)	TTS (NM_022722)	22326.0	NM_001289508	75766.0	Mm.159563	NM_029422	ENSMUSG00000022303	Dcstamp	4833414I07Rik|DC-STAMP|FIND|Tm7sf4|mDC-STAMP	dendrocyte expressed seven transmembrane protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-122605653-2	chr6	122605553	122605753	+	957.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008108, exon 2 of 2)	3' UTR (NM_008108, exon 2 of 2)	-3209.0	NM_001134391	11810.0	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26726851-2	chr17	26726751	26726951	+	614.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029870, intron 1 of 8)	intron (NM_029870, intron 1 of 8)	11201.0	NM_029870	77128.0	Mm.275414	NM_029870	ENSMUSG00000048249	Crebrf	A930001N09Rik|LRF	CREB3 regulatory factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-43830613-4	chr14	43830511	43830711	+	788.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11B|LTR|ERVK	-10972.0	NM_007894	13586.0	Mm.86948	NM_007894	ENSMUSG00000072601	Ear1	EAR-1|ECP 1|Raf1	eosinophil-associated, ribonuclease A family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-11049607-2	chr19	11049507	11049707	+	577.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_102366, intron 1 of 2)	MLTR14|LTR|ERV1	959.0	NR_102366	107350.0	Mm.6381	NM_001177351	ENSMUSG00000075010	AW112010	-	expressed sequence AW112010	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-9137308-2	chr19	9137208	9137408	+	774.299988	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR12B|LTR|ERVK	-1742.0	NM_025610	66514.0	Mm.272847	NM_025610	ENSMUSG00000024654	Asrgl1	2410004D18Rik|ALP|ALP1|AU040643|AW060375	asparaginase like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-131870048-2	chr4	131869948	131870148	+	593.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3591.0	NM_020587	57317.0	Mm.2478	NM_020587	ENSMUSG00000028911	Srsf4	5730499P16Rik|AW550192|MNCb-2616|SRp75|Sfrs4	serine/arginine-rich splicing factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-64704629-1	chr17	64704529	64704729	+	543.0	f1_balb.idr	intron (NM_008549, intron 12 of 21)	intron (NM_008549, intron 12 of 21)	-62482.0	NR_105051	101202683.0	Mm.393309	NR_105051		Dreh	-	down-regulated in hepatocellular carcinoma	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-40445920-4	chr12	40445818	40446018	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172575)	promoter-TSS (NM_172575)	-128.0	NM_178845	246196.0	Mm.26852	NM_172575	ENSMUSG00000055917	Zfp277	2410017E24Rik|NIRF4	zinc finger protein 277	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-107333076-2	chr11	107332976	107333176	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359616, intron 2 of 8)	B3A|SINE|B2	137644.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91546623-4	chr16	91546528	91546728	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008338)	promoter-TSS (NM_008338)	-466.0	NM_008338	15980.0	Mm.249364	NM_008338	ENSMUSG00000022965	Ifngr2	Ifgr2|Ifgt	interferon gamma receptor 2	protein-coding	4.6899894343109	4.46031474853766	4.0047356294133	5.33842793879081	4.44192674004872	3.93683505599576	3.41194987150687	3.91187912100669	-0.945528955391505	0.0363741305693076	0.270618118171075
Merged-chr11-9602384-4	chr11	9602392	9602592	+	909.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178259, intron 55 of 61)	intron (NM_178259, intron 55 of 61)	410550.0	NM_178259	268379.0	Mm.39270	NM_178259	ENSMUSG00000004668	Abca13	9830132L24|A930002G16Rik|AI956815	ATP-binding cassette, sub-family A (ABC1), member 13	protein-coding	-1.26763528530823	-1.24004623050697	-1.25047066243561	-1.25903360120048	-1.26719213811538	-1.23778721262148	-1.08408689508627	-0.827346378697204	2.46274650016729	0.458074601718309	1
Merged-chr4-108082459-4	chr4	108082360	108082560	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011327, intron 10 of 15)	B4|SINE|B4	-4897.0	NR_105823	102465213.0		NR_105823	ENSMUSG00000098980	Mir6397	Gm28004|mmu-mir-6397	microRNA 6397	ncRNA	-1.84362945061595	-1.81329140012928	-1.67810947190254	-1.83000206547234	-1.84149977556685	-1.81130325271815	-1.67603257143677	-1.82865309133977	0.037684011990387	0.991491645451152	1
Merged-chr1-176248284-1	chr1	176248184	176248384	+	594.0	f0_balb.idr	intron (NM_001357846, intron 1 of 8)	intron (NM_001357846, intron 1 of 8)	27028.0	NM_001357846	319455.0	Mm.338001	NM_176916	ENSMUSG00000055214	Pld5	B230365F16Rik	phospholipase D family, member 5	protein-coding	-0.298376927401279	-0.205775946200114	-0.532316199086237	-0.534624994226294	-0.292507464412698	-0.349273580079104	-0.531653641785531	-0.534222651198126	-0.456631564140498	0.85527960311236	1
Merged-chr2-166239372-2	chr2	166239272	166239472	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34536.0	NR_033467	670775.0	Mm.384326	NR_033467	ENSMUSG00000084840	Gm11468	-	predicted gene 11468	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171294813-4	chr1	171294693	171294893	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001360931, exon 2 of 7)	5' UTR (NM_001360931, exon 2 of 7)	209.0	NM_001360932	66155.0	Mm.2815	NM_025388	ENSMUSG00000062963	Ufc1	1110021H02Rik|AA062310|ESTM29	ubiquitin-fold modifier conjugating enzyme 1	protein-coding	1.74687936650902	2.08119725054027	0.989715868875761	1.84876091977169	1.30193429848438	1.61466793407558	0.993770972688989	1.64058929460168	-1.0374742202706	0.393673190168862	0.882309644749821
Merged-chr17-35237648-2	chr17	35237548	35237748	+	703.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001347351, exon 4 of 4)	exon (NM_001347351, exon 4 of 4)	1052.0	NM_023179	66237.0	Mm.396107	NM_023179	ENSMUSG00000024403	Atp6v1g2	1500002D01Rik|Atp6g2|NG38|VAG2	ATPase, H+ transporting, lysosomal V1 subunit G2	protein-coding	0.709973019330468	0.00284452777509039	-0.00277947174565196	0.630878580005204	0.263621093174875	0.00411116581518894	-0.00153835336307945	-0.00636492049239723	-2.46240902365771	0.278685116461074	1
Merged-chr2-45081620-4	chr2	45081521	45081721	+	912.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355291, intron 2 of 9)	intron (NM_001355291, intron 2 of 9)	28656.0	NM_001289521	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-66468052-4	chr18	66467965	66468165	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9461.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-140983039-2	chr4	140982939	140983139	+	823.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-3834.0	NM_029097	74772.0	Mm.205625	NM_029097	ENSMUSG00000036622	Atp13a2	1110012E06Rik|AA589443	ATPase type 13A2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-16109267-1	chr1	16109167	16109367	+	608.0	f1_balb.idr	intron (NM_133832, intron 2 of 5)	intron (NM_133832, intron 2 of 5)	3385.0	NM_133832	98711.0	Mm.274376	NM_133832	ENSMUSG00000025921	Rdh10	3110069K09Rik|4921506A21Rik|AI875664|AW549993|D1Ertd762e|m366Asp	retinol dehydrogenase 10 (all-trans)	protein-coding	-0.8953373059115	-1.01595429021966	-1.02722386355425	-1.03094824074446	-0.891680381397232	-1.0135121266659	-0.576158565088129	-1.03061279229183	1.76442349289795	0.552251544708429	1
Merged-chr4-105207120-4	chr4	105207019	105207219	+	957.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080555, intron 2 of 5)	intron (NM_080555, intron 2 of 5)	49772.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	2.33507407852147	2.72266977228224	2.30597992623725	2.99903152511995	1.88402682850704	1.91900435175985	1.65089879845703	2.47399720959034	-1.38349627714105	0.104990667636704	0.505759380475845
Merged-chr6-92943604-3	chr6	92943513	92943713	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015530, intron 1 of 2)	CpG	3031.0	NR_015530	330385.0	Mm.483472	NR_015530	ENSMUSG00000097462	9530026P05Rik	B430306B02	RIKEN cDNA 9530026P05 gene	ncRNA	0.116315338241144	0.137177153026508	0.318430923065484	0.879269782264648	0.117627992821341	0.138704500693685	0.32361698582656	0.888165229894023	0.0304578244533416	0.987942358438946	1
Merged-chr14-70241625-3	chr14	70241548	70241748	+	687.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360229, intron 6 of 12)	RLTR12B|LTR|ERVK	-33977.0	NM_011366	20410.0	Mm.5068	NM_011366	ENSMUSG00000022091	Sorbs3	SCAM-1|SH3P3|Sh3d4|vinexin-g	sorbin and SH3 domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-53774072-3	chr19	53773960	53774160	+	579.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170847, intron 1 of 13)	intron (NM_001170847, intron 1 of 13)	96754.0	NM_001170847	73713.0	Mm.313695	NM_001170847	ENSMUSG00000043639	Rbm20	1110018J23Rik|2010003H22Rik|AI646761	RNA binding motif protein 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107909047-3	chr9	107908958	107909158	+	650.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_109782, intron 1 of 18)	intron (NR_109782, intron 1 of 18)	2169.0	NM_009074	19882.0	Mm.3901	NM_009074	ENSMUSG00000032584	Mst1r	CD136|CDw136|Fv-2|Fv2|PTK8|Ron|STK	macrophage stimulating 1 receptor (c-met-related tyrosine kinase)	protein-coding	1.29975932496465	0.754261851350409	1.07695065907754	1.28156818145375	1.00625714329981	0.956098078727251	1.08515458550169	1.28894544876609	-0.16934153748129	0.900216250581199	0.998431161219273
Merged-chr9-69667424-4	chr9	69667331	69667531	+	849.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	93509.0	NM_022378	64290.0	Mm.440890	NM_022378	ENSMUSG00000059246	Foxb1	C43|Fkh5|Foxb1a|Foxb1b|Hfh-e5.1|Mf3|Twh	forkhead box B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-115966566-2	chr6	115966466	115966666	+	601.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_026376, exon 19 of 36)	exon (NM_026376, exon 19 of 36)	21635.0	NM_138311	171506.0	Mm.21899	NM_138311	ENSMUSG00000042279	H1foo	C86609|H1.8|H1fo|H1oo	H1 histone family, member O, oocyte-specific	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-54155095-2	chr11	54154992	54155192	+	552.0	f0_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54168.0	NM_011031	18452.0	Mm.3705	NM_011031	ENSMUSG00000018906	P4ha2	AA407196|C76437|P4hl	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-86748708-2	chr11	86748608	86748808	+	714.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001003908, intron 1 of 31)	intron (NM_001003908, intron 1 of 31)	8859.0	NM_001003908	67300.0	Mm.254588	NM_001003908	ENSMUSG00000047126	Cltc	3110065L21Rik|CHC|R74732	clathrin, heavy polypeptide (Hc)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99946516-2	chr15	99946416	99946616	+	600.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14858.0	NM_028180	72277.0	Mm.272766	NM_028180	ENSMUSG00000045350	1700030F18Rik	FAM186A	RIKEN cDNA 1700030F18 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-68991770-2	chr15	68991670	68991870	+	744.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010158, intron 1 of 8)	B4A|SINE|B4	63350.0	NM_010158	13992.0	Mm.17964	NM_010158	ENSMUSG00000022332	Khdrbs3	Etle|SLM-2|Salp|Slm2|T-STAR	KH domain containing, RNA binding, signal transduction associated 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-107131306-6	chr11	107131277	107131477	+	854.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_176850, exon 1 of 28)	exon (NM_176850, exon 1 of 28)	545.0	NM_176850	207165.0	Mm.343986	NM_176850	ENSMUSG00000040481	Bptf	9430093H17Rik|Falz	bromodomain PHD finger transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-153905708-2	chr1	153905608	153905808	+	585.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008131, intron 3 of 6)	B1_Mus2|SINE|Alu	5779.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-35539675-3	chr2	35539574	35539774	+	837.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18784.0	NM_001114125	69601.0	Mm.29629	NM_001001602	ENSMUSG00000026883	Dab2ip	2310011D08Rik|AI480459|Aip1|mKIAA1743	disabled 2 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-25587797-4	chr14	25587704	25587904	+	912.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033492, exon 1 of 1)	non-coding (NR_033492, exon 1 of 1)	1000.0	NR_033492	77592.0	Mm.444871	NM_175264		4931406H21Rik	-	RIKEN cDNA 4931406H21 gene	ncRNA	1.50615010776398	1.11397602875029	1.53369301460033	1.05819708247243	0.844529782989229	1.72795966900795	1.08972352854902	1.79562011053497	0.412632436027604	0.74778522078345	0.998431161219273
Merged-chr13-35081306-4	chr13	35081195	35081395	+	913.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M5|LINE|L1	86509.0	NR_153831	75197.0	Mm.234091	NR_153831	ENSMUSG00000113906	4930529N20Rik	-	RIKEN cDNA 4930529N20 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-43806865-1	chr13	43806765	43806965	+	725.333313	f0_balb.idr	Intergenic	Intergenic	21753.0	NM_001289915	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-97435663-2	chr13	97435563	97435763	+	633.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_110432, intron 1 of 1)	intron (NR_110432, intron 1 of 1)	693.0	NR_110432	100039691.0	Mm.219358	NR_110430	ENSMUSG00000078952	Lncenc1	Gm11019|Gm2373|Lincenc1|Platr18|linc-Enc1	long non-coding RNA, embryonic stem cells expressed 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-96311668-4	chr11	96311567	96311767	+	995.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4757.0	NR_131758	75395.0	Mm.440014	NR_131758	ENSMUSG00000085645	Hoxb5os	0610040B09Rik|AV302770|Hoxb5/6as	homeobox B5 and homeobox B6, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-111944315-4	chr13	111944223	111944423	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	76387.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-48837738-4	chr11	48837657	48837857	+	808.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001347446, exon 1 of 7)	exon (NM_001347446, exon 1 of 7)	286.0	NM_001347446	94089.0	Mm.390335	NM_053166	ENSMUSG00000040350	Trim7	AI790312	tripartite motif-containing 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-63860172-2	chr18	63860072	63860272	+	684.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001014981, intron 20 of 27)	intron (NM_001014981, intron 20 of 27)	151477.0	NM_001014981	104082.0	Mm.30850	NM_001014981	ENSMUSG00000040560	Wdr7	AI462727|TRAG|mKIAA0541	WD repeat domain 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-27605758-3	chr7	27605666	27605866	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007434)	promoter-TSS (NM_007434)	-31.0	NM_007434	11652.0	Mm.177194	NM_007434	ENSMUSG00000004056	Akt2	2410016A19Rik|AW554154|PKB|PKBbeta	thymoma viral proto-oncogene 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-32470227-6	chr19	32470120	32470320	+	938.4722289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15549.0	NM_010799	17330.0	Mm.255116	NM_010799	ENSMUSG00000024896	Minpp1	AA408516	multiple inositol polyphosphate histidine phosphatase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-47231835-1	chr19	47231735	47231935	+	905.0	f1_c57bl6.idr	intron (NM_001163480, intron 1 of 5)	intron (NM_001163480, intron 1 of 5)	2992.0	NM_001163480	18011.0	Mm.313651	NM_021360	ENSMUSG00000006435	Neurl1a	2410129E16Rik|AI450910|AI481072|Neu1|Neur1|Neurl|Neurl1|Nlz|Rnf67	neuralized E3 ubiquitin protein ligase 1A	protein-coding	-0.868018997351096	-0.856125619717114	-0.290795791874006	-0.558349330615429	-0.867446390878291	-0.853371970863287	-0.861175866065711	-0.863760080769826	-3.03584662398738	0.310168621537312	1
Merged-chr1-93803879-4	chr1	93803782	93803982	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025454)	promoter-TSS (NM_025454)	-83.0	NM_025454	66262.0	Mm.64065	NM_025454	ENSMUSG00000026283	Ing5	1700001C14Rik|1700027H23Rik|1810018M11Rik|AI225768	inhibitor of growth family, member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-53167096-4	chr18	53166978	53167178	+	890.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-9214.0	NM_001357463	67804.0	Mm.252171	NM_026386	ENSMUSG00000034484	Snx2	0610030A03Rik	sorting nexin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-52411463-4	chr6	52411369	52411569	+	930.604126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-80982.0	NR_046049	74304.0	Mm.490579	NR_046049	ENSMUSG00000107895	1700094M24Rik	-	RIKEN cDNA 1700094M24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-6454902-4	chr2	6454808	6455008	+	977.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	102172.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-8968816-4	chr3	8968712	8968912	+	998.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	-4666.0	NM_001025261	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-76862499-2	chr17	76862399	76862599	+	595.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	1001476.0	NR_033456	100043885.0	Mm.127562	NR_033456		Gm4710	-	predicted gene 4710	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-39444191-4	chr10	39444108	39444308	+	847.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122892, intron 2 of 12)	intron (NM_001122892, intron 2 of 12)	74409.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-62947051-4	chr10	62946956	62947156	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_152862)	promoter-TSS (NR_152862)	27.0	NM_177372	327762.0	Mm.21492	NM_177372	ENSMUSG00000036875	Dna2	Dna2l|E130315B21Rik	DNA replication helicase/nuclease 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-13393458-4	chr15	13393366	13393566	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-219791.0	NM_007666	12563.0	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150604846-2	chr4	150604746	150604946	+	643.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 12 of 22)	RLTR51B_Mm|LTR|ERVK?	47328.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127945241-2	chr7	127945141	127945341	+	564.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001319147, exon 4 of 15)	exon (NM_001319147, exon 4 of 15)	1484.0	NM_001319147	77613.0	Mm.334253	NM_001081374	ENSMUSG00000070371	Prss36	C330007D15Rik	protease, serine 36	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81294483-3	chr10	81294343	81294543	+	886.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293647, intron 1 of 17)	intron (NM_001293647, intron 1 of 17)	1480.0	NM_001146687	18717.0	Mm.24222	NM_008844	ENSMUSG00000034902	Pip5k1c	AI115456|AI835305|Pip5kIgamma	phosphatidylinositol-4-phosphate 5-kinase, type 1 gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-28211278-2	chr5	28211178	28211378	+	760.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310512, intron 1 of 3)	(TG)n|Simple_repeat|Simple_repeat	-1110.0	NM_001310511	269637.0	Mm.68286	NM_175651	ENSMUSG00000044681	Cnpy1	1500012D20Rik|9630008K15Rik|AI853839	canopy FGF signaling regulator 1	protein-coding	-0.885343988398316	-0.873197811915141	-0.879568534556306	-0.464008891048743	-0.884809499207366	-0.870535133016439	-0.878945546113603	-0.458408536970068	0.0285539633070526	0.992673327504828	1
Merged-chr12-16875475-4	chr12	16875372	16875572	+	999.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19506.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-9886255-4	chr3	9886161	9886361	+	895.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52582.0	NM_001195031	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	4.70970076069287	4.33435848150526	4.67003481324888	3.7638229434378	3.85692868171187	3.78738273595682	4.16930394204987	2.8676534374147	-0.910149560891848	0.0576549328065752	0.355313252702313
Merged-chr5-99239299-3	chr5	99239194	99239394	+	813.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145839, intron 4 of 13)	intron (NM_145839, intron 4 of 13)	13633.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-70680062-3	chr17	70679963	70680163	+	962.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360665, intron 9 of 14)	(CA)n|Simple_repeat|Simple_repeat	118316.0	NM_001128181	224997.0	Mm.311840	NM_027712	ENSMUSG00000003279	Dlgap1	4933422O14Rik|9630002F18|AI845682|AI848168|BB075781|D17Bwg0511e|GKAP/SAPAP|GKPA/SAPAP|Gkap|Sapap1|mKIAA4162	DLG associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-61091272-2	chr18	61091172	61091372	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14300.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141782959-4	chr4	141782882	141783082	+	918.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172338, exon 4 of 15)	exon (NM_172338, exon 4 of 15)	7662.0	NM_172338	214063.0	Mm.39102	NM_172338	ENSMUSG00000040697	Dnajc16	2900037O03Rik|4732437J24Rik|D030060M24|mKIAA0962	DnaJ heat shock protein family (Hsp40) member C16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72735375-4	chr6	72735256	72735456	+	990.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001079822, intron 3 of 12)	intron (NM_001079822, intron 3 of 12)	53689.0	NM_001079822	21415.0	Mm.440067	NM_009332	ENSMUSG00000055799	Tcf7l1	Tcf-3|Tcf3|bHLHb21	transcription factor 7 like 1 (T cell specific, HMG box)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-9340462-2	chr13	9340362	9340562	+	838.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081426, intron 1 of 36)	intron (NM_001081426, intron 1 of 36)	63937.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-27882115-2	chr15	27882015	27882215	+	790.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081302, intron 9 of 56)	intron (NM_001081302, intron 9 of 56)	143733.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-128392073-3	chr7	128391976	128392176	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026418, intron 3 of 4)	intron (NM_026418, intron 3 of 4)	26096.0	NM_026418	67865.0	Mm.18635	NM_026418	ENSMUSG00000030844	Rgs10	2310010N19Rik	regulator of G-protein signalling 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-17634056-3	chr6	17633936	17634136	+	781.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-2974.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	0.512894051207187	0.255651406454712	0.248547562809825	0.414885808459934	0.38872058728052	1.01326000932465	0.250117019255755	0.90422695335554	2.13078589776661	0.249067223026312	1
Merged-chr5-31253985-2	chr5	31253885	31254085	+	621.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_027221)	TTS (NM_027221)	2279.0	NM_027221	69815.0	Mm.389609	NM_027221	ENSMUSG00000029149	Krtcap3	2010001C09Rik|AW321088|Kcp3	keratinocyte associated protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-95805520-1	chr8	95805420	95805620	+	656.0	f1_c57bl6.idr	intron (NM_001205226, intron 1 of 48)	intron (NM_001205226, intron 1 of 48)	-1310.0	NR_015574	319960.0	Mm.386996	NR_015574	ENSMUSG00000074136	4930513N10Rik	-	RIKEN cDNA 4930513N10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-7277762-2	chr19	7277662	7277862	+	829.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080388, intron 16 of 16)	intron (NM_001080388, intron 16 of 16)	9483.0	NM_001320554	104383.0	Mm.283859	NM_054048	ENSMUSG00000024968	Rcor2	1A13|AW122124|CoREST|Rcor|Rcor1	REST corepressor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-126220817-2	chr4	126220717	126220917	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-18107.0	NM_146153	230753.0	Mm.29813	NM_146153	ENSMUSG00000043962	Thrap3	9330151F09Rik|B230333E16Rik|Trap150	thyroid hormone receptor associated protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-68985463-4	chr2	68985357	68985557	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347161, intron 3 of 10)	intron (NM_001347161, intron 3 of 10)	124016.0	NM_001347161	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-86666041-7	chr4	86665967	86666167	+	830.857117	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007408, intron 3 of 7)	MTC|LTR|ERVL-MaLR	3992.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	1.35074788776059	1.77163082785271	1.5868370122663	1.66562026925849	1.35957889294987	1.78471323637268	1.59843604616202	1.55290810183588	-0.0731640171917145	0.945703546981523	0.998431161219273
Merged-chr13-96671916-3	chr13	96671825	96672025	+	893.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008255)	promoter-TSS (NM_008255)	-989.0	NM_008255	15357.0	Mm.316652	NM_008255	ENSMUSG00000021670	Hmgcr	HMG-CoAR|Red	3-hydroxy-3-methylglutaryl-Coenzyme A reductase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56033070-4	chr17	56032969	56033169	+	892.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013664, intron 1 of 9)	intron (NM_013664, intron 1 of 9)	3568.0	NM_013664	20405.0	Mm.1773	NM_013664	ENSMUSG00000003200	Sh3gl1	C77078|EEN|SH3P8|Sh3d2b	SH3-domain GRB2-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-30465185-2	chr15	30465085	30465285	+	567.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355502, intron 2 of 21)	L3|LINE|CR1	292592.0	NM_008729	18163.0	Mm.321648	NM_008729	ENSMUSG00000022240	Ctnnd2	Catnd2|Nprap|neurojugin	catenin (cadherin associated protein), delta 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-37657514-4	chr13	37657410	37657610	+	925.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-168528.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	3.72874043285246	2.74065389282771	2.49167831547113	3.27635023933207	3.66610803252117	1.67616343390273	2.80032853091681	3.68340843481526	0.051173089556119	0.945508601455876	0.998431161219273
Merged-chr7-28761948-2	chr7	28761848	28762048	+	548.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001306222, intron 2 of 5)	intron (NM_001306222, intron 2 of 5)	4696.0	NM_001306222	18036.0	Mm.220333	NM_010908	ENSMUSG00000030595	Nfkbib	I(Kappa)B(beta)|I-kappa-B-beta|IKB-beta|IKappaBbeta|IkB|IkBb|NF-kappa-BIB|ikB-B	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-74307653-4	chr1	74307551	74307751	+	953.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039509, intron 2 of 9)	B1_Mur2|SINE|Alu	-3315.0	NM_027154	69660.0	Mm.261182	NM_027154	ENSMUSG00000006301	Tmbim1	2310061B02Rik|AA960455|AU024746|C78899|RECS1|Tmbib1|mKIAA4161	transmembrane BAX inhibitor motif containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-59013452-4	chr12	59013353	59013553	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025656)	promoter-TSS (NM_025656)	62.0	NM_025656	66603.0	Mm.35353	NM_025656	ENSMUSG00000060121	Gemin2	Sip1|gemin-2	gem nuclear organelle associated protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114260504-2	chr11	114260404	114260604	+	779.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	62246.0	NR_045930	73536.0	Mm.54275	NR_045930	ENSMUSG00000078600	1700092K14Rik	-	RIKEN cDNA 1700092K14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-77537447-2	chr10	77537347	77537547	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008404, intron 1 of 15)	intron (NM_008404, intron 1 of 15)	7099.0	NM_008404	16414.0	Mm.1137	NM_008404	ENSMUSG00000000290	Itgb2	2E6|AI528527|Cd18|LAD|LCAMB|Lfa1|MF17	integrin beta 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-87090140-3	chr3	87090046	87090246	+	685.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170985, intron 6 of 15)	intron (NM_001170985, intron 6 of 15)	84601.0	NM_001170985	170643.0	Mm.89552	NM_130867	ENSMUSG00000041734	Kirrel	6720469N11Rik|Kirrel1|Neph1	kirre like nephrin family adhesion molecule 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-92066078-2	chr6	92065978	92066178	+	576.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172731, intron 13 of 20)	intron (NM_172731, intron 13 of 20)	-25340.0	NM_011630	22026.0	Mm.87062	NM_011630	ENSMUSG00000005893	Nr2c2	TAK1|Tr4|mKIAA4145	nuclear receptor subfamily 2, group C, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5746822-2	chr17	5746722	5746922	+	842.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 8 of 8)	intron (NM_146073, intron 8 of 8)	-51835.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-78376087-7	chr16	78375941	78376141	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001297747, intron 1 of 4)	CpG	716.0	NR_002700	654432.0	Mm.458574	NR_002700	ENSMUSG00000044645	Gm7334	EG654432	B-cell translocation gene 3 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-50321484-4	chr11	50321387	50321587	+	977.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110500, intron 1 of 14)	intron (NM_001110500, intron 1 of 14)	4186.0	NM_001110499	12330.0	Mm.248827	NM_007597	ENSMUSG00000020368	Canx	1110069N15Rik|AI988026|Cnx|D11Ertd153e	calnexin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-177139820-4	chr1	177139714	177139914	+	942.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011785, intron 1 of 12)	RMER19B|LTR|ERVK	108953.0	NM_011785	23797.0	Mm.235194	NM_011785	ENSMUSG00000019699	Akt3	AI851531|D930002M15Rik|Nmf350	thymoma viral proto-oncogene 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-144290533-4	chr2	144290436	144290636	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT2B2|LTR|ERVL	19632.0	NM_001355688	74528.0	Mm.386817	NM_028984	ENSMUSG00000027424	Mgme1	8430406I07Rik|AI426476	mitochondrial genome maintenance exonuclease 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4146556-2	chr19	4146456	4146656	+	769.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_206973)	TTS (NM_206973)	-2107.0	NM_011778	23789.0	Mm.276859	NM_011778	ENSMUSG00000024835	Coro1b	-	coronin, actin binding protein 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-33640996-1	chr17	33640896	33641096	+	570.0	f1_c57bl6.idr	non-coding (NR_028279, exon 2 of 10)	non-coding (NR_028279, exon 2 of 10)	2901.0	NR_028279	378460.0	Mm.272606	NM_001002842	ENSMUSG00000032739	Pram1	AY665714	PML-RAR alpha-regulated adaptor molecule 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72159290-2	chr6	72159225	72159425	+	678.549988	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-36128.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-147913969-3	chr5	147913918	147914118	+	839.7333369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19203.0	NM_027872	71706.0	Mm.153218	NM_027872	ENSMUSG00000029650	Slc46a3	1200006F02Rik	solute carrier family 46, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97452405-4	chr6	97452286	97452486	+	982.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	6900.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	1.83239385587472	1.68895960112822	1.99487762426606	1.05645096719412	1.84819396607123	1.70141921205969	2.01145776449314	1.05918728440877	0.0407148993541367	0.972395265824536	0.998431161219273
Merged-chr2-72170726-4	chr2	72170628	72170828	+	983.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355478, intron 3 of 26)	ORR1B2|LTR|ERVL-MaLR	-114909.0	NM_023057	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	3.46308184586984	3.80842922343681	4.56829169928423	3.94595703117099	2.80450589695982	3.59346525152323	2.63706062659635	2.37042614184889	-1.64907586556109	0.00507782980548931	0.0677935482265512
Merged-chr10-67979536-4	chr10	67979429	67979629	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359318)	promoter-TSS (NM_001359318)	-41.0	NM_001359318	170799.0	Mm.209844	NM_133244	ENSMUSG00000037846	Rtkn2	B130039D23Rik|Mbf|Plekhk1	rhotekin 2	protein-coding	5.06157613068932	5.11800480131481	5.47591903437369	4.48529327294921	5.07012951751701	5.58414904020477	4.83292895061463	4.09796944939928	-0.103208989912621	0.784738159321721	0.998431161219273
Merged-chr18-26905801-3	chr18	26905702	26905902	+	629.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1151645.0	NM_001362334	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-41163801-4	chr15	41163690	41163890	+	964.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9911.0	NR_151516	100418302.0		NR_151516		4930555K19Rik	-	leucine rich repeat and sterile alpha motif containing 1 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-110611089-3	chr11	110611008	110611208	+	867.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	131768.0	NM_001356346	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	2.50624789252088	2.61786714817124	2.42264716508627	2.45851046766646	2.44323603108645	1.43160058070173	1.65169929538744	2.73539813787165	-0.677887878608105	0.450338055571412	0.916617731974519
Merged-chr17-17830098-2	chr17	17829956	17830156	+	830.900024	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029539)	promoter-TSS (NR_029539)	-132.0	NR_029536	387230.0		NR_029536	ENSMUSG00000065396	Mir99b	Mirn99b|mmu-mir-99b	microRNA 99b	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81493336-2	chr10	81493236	81493436	+	622.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_134009, intron 2 of 13)	intron (NM_134009, intron 2 of 13)	3027.0	NM_134009	103425.0	Mm.302791	NM_134009	ENSMUSG00000020238	Ncln	3100002P13Rik|AW120537	nicalin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-77868102-4	chr1	77868013	77868213	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT2D|LTR|ERVL	329023.0	NM_001159520	18505.0	Mm.1371	NM_008781	ENSMUSG00000004872	Pax3	Pax-3|Sp|Splchl2|splotch	paired box 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-50904065-3	chr14	50903914	50904114	+	597.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10759.0	NM_001166651	546611.0	Mm.390692	NM_001166651	ENSMUSG00000090799	Klhl33	EG546611	kelch-like 33	protein-coding	1.67849307749219	1.41076856377616	0.496358873033654	0.485071271214942	0.468695576837586	0.51381854698337	0.499542596819568	1.58978382493999	-0.916448812709579	0.772023918469783	0.998431161219273
Merged-chr3-121600583-4	chr3	121600474	121600674	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42911.0	NR_036456	100503044.0	Mm.65320	NM_176992	ENSMUSG00000044522	A730020M07Rik	-	RIKEN cDNA A730020M07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-47074564-2	chr14	47074464	47074664	+	699.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037221, intron 7 of 12)	intron (NM_001037221, intron 7 of 12)	5587.0	NM_001310544	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	2.268123909484	2.77397598025931	2.87281564073885	2.25612593707871	2.28637312221281	2.41425321521521	3.05779373138202	2.5159849538719	0.0720723066171915	0.924453782996894	0.998431161219273
Merged-chr7-83882318-3	chr7	83882109	83882309	+	819.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_030705, exon 1 of 1)	exon (NM_030705, exon 1 of 1)	2132.0	NM_030705	80889.0	Mm.272998	NM_030705	ENSMUSG00000070462	Tlnrd1	AW061151|Mesdc1	talin rod domain containing 1	protein-coding	0.536442804181796	0.277127541783646	0.269754738024146	1.01290605692393	0.543606514987783	0.278784243734386	0.271384199059079	1.02178856093808	0.0315996091759473	0.986736169842471	1
Merged-chr5-112344294-4	chr5	112344188	112344388	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001359853, exon 2 of 14)	5' UTR (NM_001359853, exon 2 of 14)	1193.0	NM_138646	192232.0	Mm.238043	NM_138646	ENSMUSG00000042328	Hps4	2010205O06Rik|AU040608|BLOC-3|C130020P05Rik|le|mKIAA1667	HPS4, biogenesis of lysosomal organelles complex 3 subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32395923-8	chr2	32395784	32395984	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133783)	promoter-TSS (NM_133783)	-6.0	NM_133783	96979.0	Mm.28048	NM_133783	ENSMUSG00000026820	Ptges2	0610038H10Rik|C79137|Gbf1|Mpges2|Pges2	prostaglandin E synthase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-4042613-4	chr15	4042543	4042743	+	924.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024188, intron 3 of 16)	L2a|LINE|L2	-15237.0	NR_028266	414066.0	Mm.394461	NR_028266		BC037032	-	cDNA Sequence BC037032	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80091464-5	chr7	80091295	80091495	+	922.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001146000, exon 6 of 6)	3' UTR (NM_001146000, exon 6 of 6)	-16138.0	NR_045695	100859962.0	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117069876-4	chr8	117069767	117069967	+	931.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029686, intron 5 of 42)	intron (NM_029686, intron 5 of 42)	12582.0	NM_029686	76645.0	Mm.159753	NM_029686	ENSMUSG00000034416	Pkd1l2	1700126L06Rik	polycystic kidney disease 1 like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-52103016-1	chr14	52102916	52103116	+	692.666687	f1_c57bl6.idr	intron (NM_001360183, intron 1 of 8)	intron (NM_001360183, intron 1 of 8)	1005.0	NM_001360178	15381.0	Mm.427321	NM_016884	ENSMUSG00000060373	Hnrnpc	AL022939|D14Wsu171e|Hnrpc|Hnrpc1|Hnrpc2|hnRNPC1|hnRNPC2|hnrnp-C	heterogeneous nuclear ribonucleoprotein C	protein-coding	1.65289933739249	3.18211317007726	2.39520177226974	2.62213368067231	1.23571505033161	2.37272800355048	1.99117740988678	2.33724670502168	-1.13820346220417	0.224574021105959	0.716302896348785
Merged-chr2-80617578-1	chr2	80617478	80617678	+	551.0	f0_balb.idr	exon (NM_024438, exon 1 of 4)	exon (NM_024438, exon 1 of 4)	364.0	NM_024438	68082.0	Mm.306818	NM_024438	ENSMUSG00000027001	Dusp19	5930436K22Rik|C79103|SKRP1|TS-DSP1	dual specificity phosphatase 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-80770689-2	chr17	80770589	80770789	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42664.0	NM_001290345	225028.0	Mm.311948	NM_001081357	ENSMUSG00000024242	Map4k3	4833416M01Rik|4833416M07Rik|9530052P13Rik|Glk|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1	mitogen-activated protein kinase kinase kinase kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-123032908-4	chr8	123032811	123033011	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 1 of 12)	intron (NM_001081379, intron 1 of 12)	9373.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-44553833-4	chr10	44553730	44553930	+	983.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11B|LTR|ERVK	-95082.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102296135-3	chr12	102296040	102296240	+	799.472229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161365, intron 1 of 9)	intron (NM_001161365, intron 1 of 9)	12499.0	NM_001161365	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-8346703-2	chr14	8346603	8346803	+	667.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20737.0	NR_151471	102632156.0		NR_151471		2610318M16Rik	-	RIKEN cDNA 2610318M16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-57801395-4	chr8	57801295	57801495	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175032, intron 10 of 11)	intron (NM_175032, intron 10 of 11)	-148340.0	NM_144731	108150.0	Mm.62886	NM_144731	ENSMUSG00000031608	Galnt7	AI225872	polypeptide N-acetylgalactosaminyltransferase 7	protein-coding	5.57493565720848	5.98689805098581	5.82335751895101	5.75516454914574	5.39163704524216	5.77361995367274	5.24046614355419	5.77922231415689	-0.252701061941795	0.332873054642449	0.833345452772687
Merged-chr14-25394270-2	chr14	25394170	25394370	+	581.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64915.0	NM_001310666	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-18578585-2	chr19	18578485	18578685	+	564.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53228.0	NM_017375	20409.0	Mm.172222	NM_017375	ENSMUSG00000024725	Ostf1	C78236|SH3P2|Sh3d3	osteoclast stimulating factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-124012877-4	chr9	124012768	124012968	+	900.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-9103.0	NM_009914	12771.0	Mm.57050	NM_009914	ENSMUSG00000035448	Ccr3	CC-CKR3|CKR3|Cmkbr1l2|Cmkbr3	chemokine (C-C motif) receptor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-113910065-1	chr9	113909965	113910165	+	911.0	f1_c57bl6.idr	intron (NM_001286600, intron 32 of 34)	B4|SINE|B4	-20869.0	NM_001083319	22221.0	Mm.28052	NM_013699	ENSMUSG00000009741	Ubp1	Cp2b|LBP-1a|LBP-1b|NF2d9	upstream binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-23952083-2	chr18	23951983	23952183	+	769.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1H|LTR|ERVL-MaLR	-2605.0	NM_027007	69256.0	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-61068590-2	chr10	61068490	61068690	+	952.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20741.0	NM_025273	13180.0	Mm.39473	NM_025273	ENSMUSG00000020098	Pcbd1	Dcoh|Pcbd|Pcd|Phs	pterin 4 alpha carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-99436484-4	chr6	99436371	99436571	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347345, intron 1 of 19)	intron (NM_001347345, intron 1 of 19)	-1126.0	NM_053202	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-41449539-2	chr10	41449439	41449639	+	706.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153398)	promoter-TSS (NM_153398)	-819.0	NM_001277229	268294.0	Mm.258475	NM_153398	ENSMUSG00000019826	Zbtb24	BC055367|Bif1|Bsg1|ZNF450	zinc finger and BTB domain containing 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-97667482-3	chr1	97667380	97667580	+	935.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR31_Mm|LTR|ERVK	-5462.0	NM_133825	52392.0	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127482847-1	chr10	127482747	127482947	+	722.0	f1_c57bl6.idr	intron (NM_001359246, intron 14 of 23)	intron (NM_001359246, intron 14 of 23)	-18839.0	NM_001359751	237611.0	Mm.32087	NM_177707	ENSMUSG00000040287	Stac3	9830125E18	SH3 and cysteine rich domain 3	protein-coding	-1.28025741253843	-1.25296595648262	-1.2630259255951	-1.2712894837512	-1.0104656993792	-1.25078591920978	-1.26074856909628	-0.971423026503385	2.3133467066417	0.490836719666531	1
Merged-chr16-59499379-1	chr16	59499279	59499479	+	770.0	f0_balb.idr	intron (NM_174848, intron 16 of 18)	intron (NM_174848, intron 16 of 18)	27604.0	NM_025910	67014.0	Mm.289150	NM_025910	ENSMUSG00000022724	Riox2	1810047J07Rik|2410057H13Rik|3830408E23Rik|AI449204|Mina	ribosomal oxygenase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-121551466-2	chr11	121551366	121551566	+	795.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_029878, intron 15 of 38)	intron (NM_029878, intron 15 of 38)	-32124.0	NM_178763	319530.0	Mm.11395	NM_178763	ENSMUSG00000039238	Zfp750	A030007D23Rik|Znf750	zinc finger protein 750	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166275581-4	chr2	166275483	166275683	+	991.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033467, intron 1 of 2)	intron (NR_033467, intron 1 of 2)	1675.0	NR_033467	670775.0	Mm.384326	NR_033467	ENSMUSG00000084840	Gm11468	-	predicted gene 11468	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34836619-3	chr17	34836513	34836713	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163770)	promoter-TSS (NM_001163770)	290.0	NM_019442	54402.0	Mm.440064	NM_019442	ENSMUSG00000061207	Stk19	G11|RP1	serine/threonine kinase 19	protein-coding	2.01031589831434	1.00675011067749	0.703848991226409	2.34364511968001	0.660056154480578	1.86369191476707	0.708801863822063	0.689284454915159	-1.7334056756394	0.244681821121473	0.743213288560871
Merged-chr5-140736019-2	chr5	140735919	140736119	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173405, intron 2 of 7)	intron (NM_173405, intron 2 of 7)	11892.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27053495-2	chr17	27053395	27053595	+	972.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3809.0	NM_080553	16440.0	Mm.458106	NM_080553	ENSMUSG00000042644	Itpr3	IP3R 3|Ip3r3|Itpr-3|tf	inositol 1,4,5-triphosphate receptor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-34276852-4	chr13	34276777	34276977	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033167, intron 3 of 10)	intron (NM_001033167, intron 3 of 10)	68305.0	NM_001033167	73102.0	Mm.23932	NM_001033167	ENSMUSG00000038267	Slc22a23	3110004L20Rik	solute carrier family 22, member 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-8313382-2	chr17	8313275	8313475	+	660.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134114, intron 1 of 7)	intron (NM_134114, intron 1 of 7)	-2257.0	NR_073374	75060.0	Mm.426530	NR_073374	ENSMUSG00000087478	4930506C21Rik	-	RIKEN cDNA 4930506C21 gene	ncRNA	0.739061081273854	1.52797380704348	1.17709813296723	1.41810943020762	0.742235416049456	1.88182690350918	1.60083454203711	0.762269434977013	0.382753809451086	0.791008954849878	0.998431161219273
Merged-chr4-55645890-2	chr4	55645790	55645990	+	733.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-113415.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-100683174-4	chr15	100682987	100683187	+	982.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033612, intron 4 of 7)	B3A|SINE|B2	4833.0	NM_033612	109901.0	Mm.2131	NM_033612	ENSMUSG00000023031	Cela1	1810009A17Rik|1810062B19Rik|Ela-1|Ela1|PC-TsF	chymotrypsin-like elastase family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-39362896-1	chr6	39362796	39362996	+	544.0	f1_balb.idr	intron (NR_155077, intron 3 of 13)	MER68|LTR|ERVL	14539.0	NR_155076	72144.0	Mm.482167	NM_028123	ENSMUSG00000029924	Slc37a3	2610507O21Rik|AU044904	solute carrier family 37 (glycerol-3-phosphate transporter), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-87406117-2	chr11	87405970	87406170	+	814.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_031386, intron 1 of 30)	B1_Mus1|SINE|Alu	1005.0	NM_031386	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	1.30889622005034	1.47395358949927	0.892418846611631	1.50346359784267	1.31973631943727	1.94915036276129	0.895690069465798	1.5118119451071	0.596767496405694	0.642580189760294	0.982823301118608
Merged-chr10-80931499-2	chr10	80931399	80931599	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008655, intron 3 of 3)	intron (NM_008655, intron 3 of 3)	1408.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-86963762-2	chr17	86963662	86963862	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145491, intron 1 of 4)	intron (NM_145491, intron 1 of 4)	651.0	NM_145491	104215.0	Mm.826	NM_145491	ENSMUSG00000024143	Rhoq	Arhq|TC10A|Tc10	ras homolog family member Q	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-137631326-4	chr5	137631248	137631448	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033148, intron 1 of 21)	intron (NR_033148, intron 1 of 21)	2225.0	NR_033148	100316903.0	Mm.200763	NR_033148		Gm20605	Lrch4-sap25	predicted gene 20605	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-20662415-3	chr9	20662293	20662493	+	751.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_023371, exon 3 of 4)	exon (NM_023371, exon 3 of 4)	10263.0	NM_023371	23988.0	Mm.7906	NM_023371	ENSMUSG00000032171	Pin1	0610025L01Rik|D9Bwg1161e	protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-149702033-3	chr4	149701990	149702190	+	849.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001029837)	promoter-TSS (NM_001029837)	-461.0	NM_001029837	18707.0	Mm.229108	NM_008840	ENSMUSG00000039936	Pik3cd	2410099E07Rik|2610208K16Rik|AW545373|p110delta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding	2.80333300538681	3.04137722045015	2.72249753704167	3.3306007527658	3.06037194722487	3.25283192578483	2.12343281342758	2.53579698512832	-0.323212697100966	0.641033749421334	0.982599433509505
Merged-chr9-109921484-3	chr9	109921396	109921596	+	739.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10278.0	NM_001205331	17758.0	Mm.217318	NM_008633	ENSMUSG00000032479	Map4	AA407148|MAP-4|Mtap-4|Mtap4	microtubule-associated protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91891189-3	chr16	91891093	91891293	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010587, intron 30 of 38)	intron (NM_010587, intron 30 of 38)	40437.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	2.72561295855783	2.58805705743485	2.39220720222739	2.74558206419686	1.10579845559047	2.25535384271906	1.18401014527394	1.15294550733659	-2.83301869907685	0.00816232645389338	0.0941046695648425
Merged-chr7-7209677-2	chr7	7209577	7209777	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145577, intron 1 of 4)	intron (NM_145577, intron 1 of 4)	321.0	NM_145577	232855.0	Mm.360403	NM_145577	ENSMUSG00000066838	Zfp772	-	zinc finger protein 772	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26518550-2	chr17	26518450	26518650	+	847.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10078.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120697341-3	chr8	120697231	120697431	+	850.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29011.0	NM_001293559	12857.0	Mm.386758	NM_009941	ENSMUSG00000031818	Cox4i1	AL024441|COX|COX IV-1|COXIV|Cox4|Cox4a|IV-1	cytochrome c oxidase subunit 4I1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85711355-2	chr12	85711255	85711455	+	685.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24635.0	NM_016767	53314.0	Mm.6672	NM_016767	ENSMUSG00000034266	Batf	B-ATF|SFA-2	basic leucine zipper transcription factor, ATF-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-46198229-3	chr18	46198159	46198359	+	911.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178872, intron 1 of 9)	CpG	559.0	NM_001170855	28105.0	Mm.277382	NM_178872	ENSMUSG00000033949	Trim36	D18Wsu100e|haprin	tripartite motif-containing 36	protein-coding	1.61642197855558	1.68184323781714	2.21843072622612	0.970214953059844	0.941135191052934	1.02019505151188	2.14119245389897	2.46960977108621	0.350332215046587	0.782977621427974	0.998431161219273
Merged-chr13-113597755-2	chr13	113597655	113597855	+	982.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_130796, intron 1 of 1)	intron (NM_130796, intron 1 of 1)	20809.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-34155220-2	chr13	34155120	34155320	+	609.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-7744.0	NM_001101430	69666.0	Mm.24788	NM_001101430	ENSMUSG00000071451	Psmg4	PAC-4|mPAC4	proteasome (prosome, macropain) assembly chaperone 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97703282-4	chr11	97703183	97703383	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011971)	promoter-TSS (NM_011971)	-151.0	NM_011971	26446.0	Mm.21874	NM_011971	ENSMUSG00000069744	Psmb3	AL033320|C10-II	proteasome (prosome, macropain) subunit, beta type 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-126321721-4	chr4	126321623	126321823	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133883)	promoter-TSS (NM_133883)	-20.0	NM_133883	100206.0	Mm.11285	NM_133883	ENSMUSG00000042558	Adprhl2	AI836109|Arh3	ADP-ribosylhydrolase like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-27042764-7	chr8	27042672	27042872	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039077, intron 1 of 4)	CpG	217.0	NM_054057	114863.0	Mm.277501	NM_054057	ENSMUSG00000031485	Plpbp	1700024N20Rik|2200002F22Rik|Prosc	pyridoxal phosphate binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-156235992-4	chr4	156235848	156236048	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021303)	promoter-TSS (NM_021303)	-62.0	NM_021303	57741.0	Mm.423051	NM_021303	ENSMUSG00000095567	Noc2l	AA410003|AF155546|NIR	NOC2 like nucleolar associated transcriptional repressor	protein-coding	5.75064169638004	5.80369670596752	4.67188865692265	5.06730295746639	5.027192822217	5.28119859901151	4.17018266153902	4.70836452560275	-0.644302173821223	0.0786247560262051	0.426850598553126
Merged-chr17-29436647-2	chr17	29436547	29436747	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54398.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	-1.28025741253843	-1.25296595648262	-1.2630259255951	-1.2712894837512	-1.0104656993792	-1.25078591920978	-1.26074856909628	-0.971423026503385	2.3133467066417	0.490836719666531	1
Merged-chr7-100226046-4	chr7	100225965	100226165	+	807.799988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1542.0	NM_027629	70974.0	Mm.440524	NM_027629	ENSMUSG00000030729	Pgm2l1	4931406N15Rik|AI553438|BM32A	phosphoglucomutase 2-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26508368-6	chr17	26508283	26508483	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013642)	promoter-TSS (NM_013642)	89.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-103366739-4	chr9	103366599	103366799	+	838.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001134426)	promoter-TSS (NM_001134426)	-919.0	NM_175565	321022.0	Mm.261025	NM_175565	ENSMUSG00000032803	Cdv3	2510010F10Rik|C230084J24Rik|C79446|TPP36	carnitine deficiency-associated gene expressed in ventricle 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-100719526-3	chr5	100719411	100719611	+	699.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_152803, exon 1 of 12)	exon (NM_152803, exon 1 of 12)	205.0	NM_152803	15442.0	Mm.265786	NM_152803	ENSMUSG00000035273	Hpse	HSE1|Hpa|Hpr1	heparanase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-23992472-2	chr16	23992372	23992572	+	698.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3620.0	NM_009744	12053.0	Mm.347398	NM_009744	ENSMUSG00000022508	Bcl6	Bcl5	B cell leukemia/lymphoma 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-117312631-4	chr2	117312521	117312721	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011246, intron 2 of 16)	intron (NM_011246, intron 2 of 16)	30256.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-101696415-4	chr2	101696330	101696530	+	923.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303273, intron 6 of 6)	intron (NM_001303273, intron 6 of 6)	18010.0	NM_001303273	22034.0	Mm.292729	NM_009424	ENSMUSG00000027164	Traf6	2310003F17Rik|AI851288|C630032O20Rik	TNF receptor-associated factor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-37799941-2	chr2	37799841	37800041	+	614.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001163566)	TTS (NM_001163566)	23692.0	NM_001163566	241324.0	Mm.392369	NM_001163566	ENSMUSG00000035403	Crb2	5930402A21|BC043114	crumbs family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-93142314-4	chr16	93142195	93142395	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	210894.0	NR_040486	69857.0	Mm.81192	NR_040486	ENSMUSG00000100277	1810053B23Rik	1810008L18Rik|1810056K14Rik	RIKEN cDNA 1810053B23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120471332-4	chr8	120471207	120471407	+	770.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17559.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-154436337-4	chr2	154436261	154436461	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009823)	promoter-TSS (NM_009823)	-123.0	NM_172860	12396.0	Mm.29914	NM_009823	ENSMUSG00000038533	Cbfa2t2	A430091M07|C330013D05Rik|Cbfa2t2h|MTGR1	core-binding factor, runt domain, alpha subunit 2, translocated to, 2 (human)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-98383225-4	chr4	98383131	98383331	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053157)	promoter-TSS (NM_053157)	34.0	NM_053157	94043.0	Mm.331719	NM_053157	ENSMUSG00000028563	Tm2d1	2310026L18Rik|AA990549|Bbp	TM2 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-44657803-1	chr13	44657703	44657903	+	549.0	f0_c57.idr	Intergenic	Intergenic	-72971.0	NM_021878	16468.0	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-24119623-2	chr9	24119523	24119723	+	753.3000490000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_175678, intron 2 of 9)	intron (NM_175678, intron 2 of 9)	21605.0	NM_175678	319239.0	Mm.130824	NM_175678	ENSMUSG00000043659	Npsr1	9330128H10Rik|GPRA|Gpr154|MVTR|PGR14|VRR1	neuropeptide S receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91817212-1	chr16	91817112	91817312	+	544.0	f1_balb.idr	intron (NM_001110276, intron 11 of 15)	intron (NM_001110276, intron 11 of 15)	87841.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97229673-3	chr11	97229579	97229779	+	853.666626	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008942, intron 14 of 22)	A-rich|Low_complexity|Low_complexity	-41787.0	NM_008379	16211.0	Mm.251013	NM_008379	ENSMUSG00000001440	Kpnb1	AA409963|IPOB|Impnb	karyopherin (importin) beta 1	protein-coding	2.30541237719308	2.93978900143382	3.24956683472793	3.28846423701863	2.54653446596247	2.10157502616945	2.52088072165039	2.30642436216822	-1.22275974568381	0.0963641551274644	0.48212679174263
Merged-chr12-75413936-3	chr12	75413843	75414043	+	847.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175644, intron 2 of 2)	intron (NM_175644, intron 2 of 2)	2838.0	NM_175644	217674.0	Mm.252250	NM_175644	ENSMUSG00000048982	Gphb5	OGH|Zlut1	glycoprotein hormone beta 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-84675870-3	chr4	84675787	84675987	+	896.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172870)	promoter-TSS (NM_172870)	-801.0	NM_172870	242509.0	Mm.190774	NM_172870	ENSMUSG00000028487	Bnc2	5031434M05Rik|8430420F16Rik	basonuclin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-98882690-4	chr10	98882582	98882782	+	905.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31960.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-54259205-4	chr14	54259109	54259309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134076)	promoter-TSS (NM_134076)	-23.0	NM_134076	105501.0	Mm.28771	NM_134076	ENSMUSG00000040997	Abhd4	1110035H23Rik|AI429574|Abh4	abhydrolase domain containing 4	protein-coding	5.34476107689535	5.92912550693015	5.29721180190885	5.53654703145314	5.58250457197537	5.86715707972995	5.75571545716723	5.28418627845975	0.102979789257879	0.708562517784912	0.998431161219273
Merged-chr17-8149603-4	chr17	8149513	8149713	+	822.395813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1781.0	NM_026611	68195.0	Mm.181237	NM_026611	ENSMUSG00000094724	Rnaset2b	0610007O07Rik|4833423A10Rik|4930532K22Rik|C79750|RNASE6PL|Rnaset2	ribonuclease T2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-121581400-2	chr8	121581300	121581500	+	648.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2594.0	NM_133765	76454.0	Mm.24829	NM_133765	ENSMUSG00000052934	Fbxo31	1110003O08Rik|2310046N15Rik|Fbx14|Fbxo14	F-box protein 31	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-101867054-4	chr13	101866968	101867168	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-98851.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-153753268-2	chr1	153753168	153753368	+	711.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011882, intron 3 of 8)	intron (NM_011882, intron 3 of 8)	3842.0	NM_011882	24014.0	Mm.259254	NM_011882	ENSMUSG00000066800	Rnasel	E230029I04Rik	ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-32116281-2	chr12	32116181	32116381	+	766.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55002.0	NM_011158	19088.0	Mm.25594	NM_011158	ENSMUSG00000002997	Prkar2b	AI451071|AW061005|PKARIIbeta|Pkarb2|RII(beta)	protein kinase, cAMP dependent regulatory, type II beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-97878951-3	chr15	97878869	97879069	+	783.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009504, intron 3 of 9)	intron (NM_009504, intron 3 of 9)	29327.0	NM_009504	22337.0	Mm.245084	NM_009504	ENSMUSG00000022479	Vdr	Nr1i1	vitamin D (1,25-dihydroxyvitamin D3) receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21513166-2	chr9	21513066	21513266	+	916.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-2932.0	NR_136911	17083.0	Mm.196618	NM_010744	ENSMUSG00000032180	Tmed1	Il1rl1l|Ly84l|St2l	transmembrane p24 trafficking protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5274312-4	chr19	5274223	5274423	+	994.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_030109, exon 21 of 21)	3' UTR (NM_030109, exon 21 of 21)	-1204.0	NM_153129	107975.0	Mm.234923	NM_153129	ENSMUSG00000024855	Pacs1	AI325977	phosphofurin acidic cluster sorting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-88286595-2	chr1	88286495	88286695	+	869.7999880000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9016.0	NM_198652	381280.0	Mm.384762	NM_198652	ENSMUSG00000044783	Hjurp	6430706D22Rik|A730008H23Rik|C330011F01Rik|Gm975|Mfleg1	Holliday junction recognition protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-76597161-4	chr13	76596940	76597140	+	890.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030174, intron 1 of 20)	intron (NM_030174, intron 1 of 20)	212079.0	NM_030174	78771.0	Mm.316249	NM_030174	ENSMUSG00000021596	Mctp1	2810465F10Rik	multiple C2 domains, transmembrane 1	protein-coding	-0.0832056328874568	-0.198432745004971	-0.0442811228627601	-0.204919949413291	0.132731614494396	0.127159305220603	-0.201298157241331	0.0706818809389627	1.83567611197061	0.400106994619303	1
Merged-chr4-99185549-4	chr4	99185444	99185644	+	918.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8390.0	NM_175029	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	1.0480209968948	0.543254900822209	0.962646010247551	0.681730540931321	0.657522464583206	0.544715466029857	1.17031591316633	0.818394058317476	-0.00545817254450888	0.997251047116254	1
Merged-chr6-16856806-3	chr6	16856682	16856882	+	688.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031198, intron 2 of 6)	intron (NM_031198, intron 2 of 6)	41659.0	NM_031198	21426.0	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-65458445-4	chr16	65458389	65458589	+	975.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-62140.0	NM_008849	18736.0	Mm.355440	NM_008849	ENSMUSG00000004842	Pou1f1	GHF-1|Hmp1|Pit-1|Pit1|Pit1-rs1|dw|dwarf	POU domain, class 1, transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-9875245-2	chr13	9875145	9875345	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-109924.0	NM_144516	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-103375480-2	chr11	103375380	103375580	+	930.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_183034, intron 7 of 11)	intron (NM_183034, intron 7 of 11)	-11788.0	NM_001205236	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-62636434-2	chr4	62636334	62636534	+	593.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019492, intron 16 of 19)	intron (NM_019492, intron 16 of 19)	16762.0	NM_134257	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-6284889-4	chr2	6284768	6284968	+	882.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040333, intron 4 of 6)	intron (NR_040333, intron 4 of 6)	-37889.0	NM_001080548	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	-0.263104048418242	-0.509116084950894	-0.512635359094974	-0.51534208277247	0.111578800940105	-0.317315812560509	-0.511860222336185	-0.514869761161652	1.7590246987027	0.50681421659804	1
Merged-chr7-98816903-2	chr7	98816803	98817003	+	896.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18209.0	NM_001285794	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-33467715-4	chr2	33467604	33467804	+	850.1124880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355611, intron 1 of 2)	intron (NM_001355611, intron 1 of 2)	828.0	NM_027947	71834.0	Mm.44186	NM_027947	ENSMUSG00000026788	Zbtb43	1700010E06Rik|Zfp297b|mKIAA0414	zinc finger and BTB domain containing 43	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-8941306-2	chr12	8941206	8941406	+	720.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6623.0	NM_010770	17182.0	Mm.42226	NM_010770	ENSMUSG00000020583	Matn3	AV009181	matrilin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167688275-4	chr2	167688174	167688374	+	966.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009883)	promoter-TSS (NM_009883)	-641.0	NM_009883	12608.0	Mm.439656	NM_009883	ENSMUSG00000056501	Cebpb	C/EBPbeta|CRP2|IL-6DBP|LAP|LIP|NF-IL6|NF-M|Nfil6	CCAAT/enhancer binding protein (C/EBP), beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-19666664-4	chr5	19666562	19666762	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170746, intron 1 of 22)	intron (NM_001170746, intron 1 of 22)	-240856.0	NM_001170745	50791.0	Mm.332231	NM_015823	ENSMUSG00000040003	Magi2	AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705	membrane associated guanylate kinase, WW and PDZ domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-22654567-4	chr16	22654474	22654674	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346673, intron 1 of 23)	intron (NM_001346673, intron 1 of 23)	2657.0	NM_138650	110197.0	Mm.194986	NM_138650	ENSMUSG00000022861	Dgkg	2900055E17Rik|90kDa|AI854428|Dagk3|E430001K23Rik|mKIAA4131	diacylglycerol kinase, gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-153431915-4	chr1	153431809	153432009	+	845.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033162, intron 2 of 9)	ORR1D2|LTR|ERVL-MaLR	6700.0	NM_001033162	71836.0	Mm.49460	NM_001033162	ENSMUSG00000042708	Shcbp1l	1700012A16Rik	Shc SH2-domain binding protein 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-66888194-3	chr9	66888081	66888281	+	682.011108	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	31524.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46961912-4	chr19	46961795	46961995	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164363, intron 1 of 17)	CpG	456.0	NM_029810	76952.0	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-6178617-3	chr2	6178524	6178724	+	831.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14627.0	NR_040333	320132.0	Mm.445891	NR_040333	ENSMUSG00000087125	A230108P19Rik	-	RIKEN cDNA A230108P19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-5771889-2	chr13	5771789	5771989	+	629.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	86203.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-30198126-6	chr11	30198079	30198279	+	959.388916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009260)	promoter-TSS (NM_009260)	78.0	NM_009260	20742.0	Mm.123110	NM_009260	ENSMUSG00000020315	Sptbn1	9930031C03Rik|AL033301|SPTB2|Spnb-2|Spnb2|elf1|elf3|mKIAA4049	spectrin beta, non-erythrocytic 1	protein-coding	0.754422870459007	0.497643925714291	1.18992675733522	0.482235658296814	0.761802565460553	0.499591798723029	1.20311398824861	0.936914606672559	0.542355401329476	0.742625247922364	1
Merged-chr1-133679652-3	chr1	133679562	133679762	+	818.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172842, exon 6 of 6)	3' UTR (NM_172842, exon 6 of 6)	10354.0	NM_172842	240754.0	Mm.36534	NM_172842	ENSMUSG00000051998	Lax1	A530029E09|E430019B13Rik	lymphocyte transmembrane adaptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-12771207-2	chr17	12771107	12771307	+	988.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_027773, intron 1 of 2)	MTD|LTR|ERVL-MaLR	-1501.0	NM_010515	16004.0	Mm.26553	NM_010515	ENSMUSG00000023830	Igf2r	AI661837|CD222|CI-MPR|M6P/IGF2R|Mpr300	insulin-like growth factor 2 receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-25978516-2	chr6	25978416	25978616	+	788.875	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47090.0	NR_040771	626904.0	Mm.126787	NR_040771	ENSMUSG00000106799	Gm20756	-	predicted gene, 20756	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134566060-1	chr6	134565960	134566160	+	657.0	f0_balb.idr	intron (NM_008514, intron 1 of 22)	intron (NM_008514, intron 1 of 22)	853.0	NM_008514	16974.0	Mm.321990	NM_008514	ENSMUSG00000030201	Lrp6	C030016K15Rik|Cd|Gw|ska26|ska<m26Jus>|skax26	low density lipoprotein receptor-related protein 6	protein-coding	-0.112279432572751	0.266043101078515	-0.252819658212026	-0.256739445430523	-0.262294526780319	0.514087967345304	-0.251700767870949	-0.256054008067458	0.483768403576788	0.839725518876296	1
Merged-chr1-88588201-1	chr1	88588101	88588301	+	612.0	f0_c57.idr	Intergenic	MTB|LTR|ERVL-MaLR	36684.0	NR_037971	100503197.0	Mm.99352	NR_037971	ENSMUSG00000100798	Gm19589	-	predicted gene, 19589	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-6721686-4	chr2	6721587	6721787	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310447)	promoter-TSS (NM_001310447)	-25.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-72196857-2	chr4	72196757	72196957	+	595.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285530, intron 4 of 17)	intron (NM_001285530, intron 4 of 17)	4036.0	NM_011599	21885.0	Mm.278444	NM_011599	ENSMUSG00000008305	Tle1	C230057C06Rik|Estm14|Grg-1|Grg1|Tle4l	transducin-like enhancer of split 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135467402-4	chr5	135467273	135467473	+	791.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146001, intron 1 of 30)	MTEa|LTR|ERVL-MaLR	-72827.0	NM_148932	107939.0	Mm.28399	NM_148932	ENSMUSG00000053293	Pom121	2610027A18Rik|C80273|mKIAA0618	nuclear pore membrane protein 121	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-37114311-2	chr15	37114211	37114411	+	873.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-106909.0	NM_026521	68036.0	Mm.371631	NM_026521	ENSMUSG00000062397	Zfp706	3110006P09Rik|AA793007|AW536850|C77232|Znf706	zinc finger protein 706	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-44792372-2	chr17	44792272	44792472	+	897.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178652, intron 2 of 11)	intron (NM_178652, intron 2 of 11)	15206.0	NM_178652	109115.0	Mm.431327	NM_178652	ENSMUSG00000038954	Supt3	2310066G22Rik|AI315192|SPT3|SPT3L|Supt3h	suppressor of Ty 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-108368026-2	chr5	108367926	108368126	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20347.0	NM_008806	18587.0	Mm.1372	NM_008806	ENSMUSG00000029491	Pde6b	Pdeb|r|rd|rd-1|rd1|rd10	phosphodiesterase 6B, cGMP, rod receptor, beta polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-41073699-4	chr9	41073592	41073792	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176860, intron 1 of 13)	intron (NM_176860, intron 1 of 13)	5814.0	NM_001357412	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	-0.0786198155099791	0.528332838266339	-0.21685641127917	0.328165170902552	-0.226253723943255	-0.210690890781643	-0.21574559595141	-0.22006613615919	-3.81814451310052	0.0992485265868475	1
Merged-chr15-41612421-4	chr15	41612317	41612517	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152565, intron 2 of 17)	MIR3|SINE|MIR	163314.0	NM_001358977	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35266343-2	chr17	35266243	35266443	+	901.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001267808, intron 9 of 11)	intron (NM_001267808, intron 9 of 11)	3220.0	NM_001267808	14980.0	Mm.439675	NM_001267808		H2-L	H-2L	histocompatibility 2, D region locus L	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-173229737-4	chr2	173229654	173229854	+	902.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022995, intron 2 of 3)	intron (NM_022995, intron 2 of 3)	-10832.0	NM_001139519	58203.0	Mm.116687	NM_021394	ENSMUSG00000027514	Zbp1	2010010H03Rik|Dai|Dlm1|mZaDLM	Z-DNA binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-131087288-3	chr2	131087177	131087377	+	944.9722289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011426)	promoter-TSS (NM_011426)	-512.0	NM_011426	20612.0	Mm.1374	NM_011426	ENSMUSG00000027322	Siglec1	Cd169|Siglec-1|Sn	sialic acid binding Ig-like lectin 1, sialoadhesin	protein-coding	1.68595170295584	1.70912142428828	1.22332680283507	2.56283636993918	1.82839884305488	2.04842030216029	2.10767565377394	2.34248191653198	0.47367684716539	0.639846681352338	0.982599433509505
Merged-chr6-124493036-4	chr6	124492889	124493089	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181344)	promoter-TSS (NM_181344)	-124.0	NM_181344	232371.0	Mm.132974	NM_181344	ENSMUSG00000038527	C1rl	C1r-LP|C1rl1|C1rlp	complement component 1, r subcomponent-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-69861166-4	chr2	69861053	69861253	+	981.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355265)	promoter-TSS (NM_001355265)	-409.0	NM_001110145	20823.0	Mm.10508	NM_009278	ENSMUSG00000068882	Ssb	SS-B	Sjogren syndrome antigen B	protein-coding	-2.18308165884198	-2.15547475440471	-2.16382331017202	-2.1706810624505	-2.18114370519566	-2.15366558754311	-2.03057248461154	-2.16945352807143	0.759018020146679	0.829933115115583	1
Merged-chr10-57792611-4	chr10	57792524	57792724	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1920.0	NM_020561	57319.0	Mm.2379	NM_020561	ENSMUSG00000019872	Smpdl3a	0610010C24Rik|AI529588|ASM3A|ASML3|ASML3A	sphingomyelin phosphodiesterase, acid-like 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-69695254-2	chr3	69695154	69695354	+	641.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26801.0	NM_133787	97112.0	Mm.21062	NM_133787	ENSMUSG00000027787	Nmd3	C87860	NMD3 ribosome export adaptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-172346929-3	chr1	172346837	172347037	+	916.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039484, intron 1 of 1)	intron (NM_001039484, intron 1 of 1)	5727.0	NM_001039484	16513.0	Mm.254563	NM_020269	ENSMUSG00000044708	Kcnj10	BIR10|BIRK-1|Kir1.2|Kir4.1	potassium inwardly-rectifying channel, subfamily J, member 10	protein-coding	1.87482902028346	1.70393282499598	1.76061688148628	0.936544598782276	1.26324413464623	1.95611972358446	0.954398553118898	1.32288579211814	-0.614171218090482	0.624312173752261	0.980630817450287
Merged-chr15-83037892-4	chr15	83037803	83038003	+	957.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger16a|DNA|TcMar-Tigger	-4506.0	NM_001271411	74039.0	Mm.32584	NM_028728	ENSMUSG00000058099	Nfam1	4921501M20Rik|Cnaip	Nfat activating molecule with ITAM motif 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-7939853-4	chr17	7939746	7939946	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5768.0	NM_025789	66832.0	Mm.29830	NM_025789	ENSMUSG00000073471	Rsph3a	1700012G05Rik|4930524H12Rik|R74860|Rshl2|Rshl2a	radial spoke 3A homolog (Chlamydomonas)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-92493652-1	chr5	92493552	92493752	+	552.0	f0_balb.idr	intron (NM_007644, intron 1 of 11)	intron (NM_007644, intron 1 of 11)	12005.0	NM_007644	12492.0	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-81480910-4	chr17	81480810	81481010	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 2 of 8)	intron (NR_104580, intron 2 of 8)	257477.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-35156654-4	chr7	35156532	35156732	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29753.0	NM_017394	53896.0	Mm.35567	NM_017394	ENSMUSG00000030495	Slc7a10	AL024237|Asc-1|D7Bwg0847e	solute carrier family 7 (cationic amino acid transporter, y+ system), member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-20917747-1	chr11	20917647	20917847	+	561.5	f0_balb.idr	Intergenic	Intergenic	-86639.0	NM_173752	216551.0	Mm.76694	NM_173752	ENSMUSG00000042363	Lgalsl	1110067D22Rik|A530071M23|Grpa|Hspc159|Lgalsla	lectin, galactoside binding-like	protein-coding	-1.22915060970067	-1.20283889872473	-1.21346133762366	-1.05883428008781	-1.22869714442646	-1.20053697190277	-0.753678471328647	-1.22062504920339	1.43421633794309	0.667093555748306	1
Merged-chr1-39901449-7	chr1	39901359	39901559	+	931.261902	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252202, intron 1 of 29)	CpG	546.0	NM_008696	26921.0	Mm.491139	NM_008696	ENSMUSG00000026074	Map4k4	9430080K19Rik|AU043147|AU045934|AW046177|HGK|Nik	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-79018838-2	chr3	79018745	79018945	+	587.0	f0_balb.idr|f1_c57bl6.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	126042.0	NM_001310536	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-73401319-4	chr14	73401213	73401413	+	977.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16024.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80901868-5	chr10	80901812	80902012	+	848.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013895)	promoter-TSS (NM_013895)	-943.0	NM_013895	30055.0	Mm.142132	NM_013895	ENSMUSG00000020219	Timm13	D10Ertd378e|Tim9|Timm9	translocase of inner mitochondrial membrane 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-105622858-1	chr1	105622758	105622958	+	680.0	f0_balb.idr	intron (NM_013784, intron 14 of 30)	L1MA4A|LINE|L1	40818.0	NM_013784	27392.0	Mm.268911	NM_013784	ENSMUSG00000056536	Pign	Gm20308|PIG-N	phosphatidylinositol glycan anchor biosynthesis, class N	protein-coding	0.124998869516225	-0.108762703221594	-0.113034013511093	-0.116315035273877	0.327209974184707	-0.107796962321206	0.0556863083044953	0.387720976355552	2.17673372665664	0.332989119758131	1
Merged-chr16-92440374-4	chr16	92440236	92440436	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081549, intron 1 of 3)	intron (NM_001081549, intron 1 of 3)	25833.0	NM_001081549	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-78529668-2	chr9	78529568	78529768	+	586.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-47944.0	NM_010106	13627.0	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-67350598-4	chr17	67350459	67350659	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	3900.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-146777725-1	chr5	146777625	146777825	+	746.0	f1_c57bl6.idr	intron (NM_011669, intron 1 of 8)	B1_Mur2|SINE|Alu	17231.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-61311309-1	chr18	61311209	61311409	+	1000.0	f1_balb.idr	exon (NM_133249, exon 5 of 12)	exon (NM_133249, exon 5 of 12)	86591.0	NR_029879	723889.0		NR_029879	ENSMUSG00000105200	Mir378a	Mir378|Mirn378|mmu-mir-378|mmu-mir-378a	microRNA 378a	ncRNA	0.473601311330406	0.0556168964185413	-0.308303730868743	-0.144770109938927	-0.316724447801231	-0.302764154366629	-0.307306536728648	-0.311183011820868	-3.70635059078892	0.121312783203031	1
Merged-chr1-152038456-7	chr1	152038352	152038552	+	964.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197990, intron 1 of 5)	intron (NM_197990, intron 1 of 5)	51868.0	NM_197990	69399.0	Mm.278031	NM_197990	ENSMUSG00000032666	1700025G04Rik	2610510E02Rik|2900042O04Rik	RIKEN cDNA 1700025G04 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122553958-2	chr5	122553857	122554057	+	629.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_009879, intron 18 of 18)	intron (NM_009879, intron 18 of 18)	-51732.0	NR_027838	11938.0	Mm.227583	NM_009722	ENSMUSG00000029467	Atp2a2	9530097L16Rik|D5Wsu150e|SERCA2|SERCA2B|Serca2a|mKIAA4195	ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	protein-coding	3.67386541542018	3.12211590517346	4.02853678761282	4.17959839227954	3.10795868440749	3.27384361308032	4.0579470522997	3.94116573543761	-0.226933173198374	0.670105155764026	0.99359666617512
Merged-chr5-3360100-4	chr5	3359996	3360196	+	912.974976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 2 of 7)	MTE2a|LTR|ERVL-MaLR	16203.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-31211661-2	chr8	31211561	31211761	+	782.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286425, intron 3 of 3)	intron (NM_001286425, intron 3 of 3)	24330.0	NM_001286425	171167.0	Mm.334477	NM_134161	ENSMUSG00000046152	Fut10	fuc-TX|fut10A	fucosyltransferase 10	protein-coding	-1.17367364971587	-1.14665061133654	-1.15856004380685	-1.16834280623128	-1.17310571790619	-1.14406978763884	-0.42938571406771	-1.16659169643457	2.89727187181404	0.396361616615464	1
Merged-chr7-72299871-1	chr7	72299771	72299971	+	833.0	f0_balb.idr	intron (NM_001024703, intron 1 of 22)	intron (NM_001024703, intron 1 of 22)	6724.0	NM_001024703	244049.0	Mm.217412	NM_001024703	ENSMUSG00000032776	Mctp2	Gm489	multiple C2 domains, transmembrane 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80323620-6	chr10	80323579	80323779	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008793, exon 10 of 15)	exon (NM_008793, exon 10 of 15)	-3131.0	NM_025521	66374.0	Mm.383824	NM_025521	ENSMUSG00000020133	2310011J03Rik	AI452186|AW545358	RIKEN cDNA 2310011J03 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-25045104-2	chr17	25045012	25045212	+	965.8333130000001	f1_balb.idr|f1_c57bl6.idr	exon (NM_134126, exon 13 of 30)	exon (NM_134126, exon 13 of 30)	29026.0	NM_134126	106633.0	Mm.32802	NM_134126	ENSMUSG00000024169	Ift140	AI661311|Tce5|Wdtc2|mKIAA0590	intraflagellar transport 140	protein-coding	2.16442638774935	2.17292166751713	2.95024949462292	2.72989062069531	1.65089989476935	1.3453980035418	1.96114965781636	2.29632807617748	-1.63224925961245	0.07604384559483	0.418371855037848
Merged-chr7-114117730-4	chr7	114117626	114117826	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025846)	promoter-TSS (NM_025846)	55.0	NM_025846	66922.0	Mm.276572	NM_025846	ENSMUSG00000055723	Rras2	2610016H24Rik|C86394|TC21	related RAS viral (r-ras) oncogene 2	protein-coding	2.82108108870405	2.86727028885708	2.97371425257727	1.72115203104354	3.13798054257249	3.10239804078026	3.58498279323252	1.45772362561278	0.615259176623217	0.45951147672784	0.920256758657899
Merged-chr7-81243259-4	chr7	81243160	81243360	+	828.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008803, intron 1 of 21)	intron (NM_008803, intron 1 of 21)	29456.0	NM_008803	18584.0	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-107595035-3	chr11	107594948	107595148	+	957.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198298, intron 5 of 31)	intron (NM_198298, intron 5 of 31)	-42674.0	NR_105897	102465562.0		NR_105897	ENSMUSG00000098497	Mir6932	Gm27691|mmu-mir-6932	microRNA 6932	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-53453889-3	chr19	53453808	53454008	+	939.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028427, intron 2 of 9)	intron (NR_028427, intron 2 of 9)	10888.0	NR_028427	381232.0	Mm.248624	NR_028427	ENSMUSG00000097636	Mirt1	4833407H14Rik|5430437C04Rik|5830416P10Rik|Gm10758	myocardial infarction associated transcript 1	ncRNA	-0.417784243931753	-0.405112911337092	-0.409265944338833	-0.246587561666572	-0.269465512228394	0.331988635911418	-0.408350106667686	-0.243775407331866	2.7088768679131	0.249774067952697	1
Merged-chr8-24438969-4	chr8	24438867	24439067	+	962.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026931)	promoter-TSS (NM_026931)	-21.0	NM_026931	69068.0	Mm.25775	NM_026931	ENSMUSG00000056313	Tcim	1110065B09Rik|1810011O10Rik|AW121743|AW321058	transcriptional and immune response regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21016724-4	chr9	21016626	21016826	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010493, intron 1 of 6)	intron (NM_010493, intron 1 of 6)	786.0	NM_010493	15894.0	Mm.435508	NM_010493	ENSMUSG00000037405	Icam1	CD54|Icam-1|Ly-47|MALA-2	intercellular adhesion molecule 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-147430469-2	chr4	147430369	147430569	+	571.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039209, intron 1 of 2)	RMER15|LTR|ERVL	-122808.0	NM_001014397	433804.0	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154	zinc finger protein 985	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-45916325-3	chr1	45916200	45916400	+	872.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016917, intron 5 of 7)	intron (NM_016917, intron 5 of 7)	9294.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25278034-2	chr7	25277934	25278134	+	717.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001302811, intron 2 of 20)	intron (NM_001302811, intron 2 of 20)	-4145.0	NM_027882	71722.0	Mm.28833	NM_027882	ENSMUSG00000005442	Cic	1200010B10Rik|mKIAA0306	capicua transcriptional repressor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-103958839-2	chr11	103958739	103958939	+	642.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4783.0	NM_008740	18195.0	Mm.260117	NM_008740	ENSMUSG00000034187	Nsf	AI316878|AU020090|AU067812|SKD2	N-ethylmaleimide sensitive fusion protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-74794335-2	chr5	74794232	74794432	+	625.666626	f0_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-91429.0	NM_001159577	16924.0	Mm.440403	NM_010727	ENSMUSG00000029228	Lnx1	Lnx	ligand of numb-protein X 1	protein-coding	-1.7024385483431	-1.81249224917775	-1.82134771053534	-1.82862185015837	-1.70038292649591	-1.81057323376012	-1.81934302819017	-1.82731978264371	0.0376840119903864	0.991491645451152	1
Merged-chr11-78183963-2	chr11	78183863	78184063	+	574.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207523)	promoter-TSS (NM_207523)	-379.0	NM_207523	268449.0	Mm.22723	NM_207523	ENSMUSG00000058546	Rpl23a	BC029892|MDA20	ribosomal protein L23A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124808085-2	chr6	124807985	124808185	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001306050)	promoter-TSS (NM_001306050)	-576.0	NM_001306051	14794.0	Mm.261906	NM_013539	ENSMUSG00000038451	Spsb2	AI461677|C9|Grcc9|SSB2	splA/ryanodine receptor domain and SOCS box containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-155223930-2	chr1	155223830	155224030	+	782.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	65227.0	NM_021433	58244.0	Mm.66264	NM_021433	ENSMUSG00000026470	Stx6	2310039E05Rik|2410005I16Rik|AA437559|AI415714|AI845861	syntaxin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-150869664-3	chr2	150869537	150869737	+	811.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151505, intron 1 of 12)	intron (NR_151505, intron 1 of 12)	-27067.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-38186850-2	chr18	38186750	38186950	+	767.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22912.0	NM_029357	75599.0	Mm.36560	NM_029357	ENSMUSG00000051375	Pcdh1	2010005A06Rik|AI585920	protocadherin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-23750342-1	chr17	23750242	23750442	+	602.0	f1_balb.idr	intron (NR_015472, intron 2 of 2)	intron (NR_015472, intron 2 of 2)	1106.0	NR_015472	638247.0	Mm.382600	NR_015472	ENSMUSG00000097006	9530082P21Rik	E030034P13Rik	RIKEN cDNA 9530082P21 gene	ncRNA	2.01415421876952	1.54001085049744	2.32564758477456	3.10210322423476	2.35015962417023	1.26021533831151	1.22405129946934	2.94322242068645	-0.442880433101635	0.676456764490366	0.99440487726309
Merged-chr7-141382822-2	chr7	141382722	141382922	+	849.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9338.0	NM_011528	21351.0	Mm.29182	NM_011528	ENSMUSG00000025503	Taldo1	-	transaldolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-52292141-4	chr12	52292020	52292220	+	803.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029760, intron 8 of 10)	intron (NM_029760, intron 8 of 10)	188489.0	NR_136881	102638611.0	Mm.363799	NR_136881	ENSMUSG00000111982	Gm35135	-	predicted gene, 35135	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-20978997-4	chr9	20978943	20979143	+	865.2062380000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2250.0	NM_010333	14739.0	Mm.46493	NM_010333	ENSMUSG00000043895	S1pr2	1100001A16Rik|Edg5|Gpcr13|H218|LPb2|S1P2	sphingosine-1-phosphate receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32713182-9	chr2	32713064	32713264	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_130860)	promoter-TSS (NM_130860)	-192.0	NR_039536	100628606.0		NR_039536	ENSMUSG00000105841	Mir3960	mmu-mir-3960	microRNA 3960	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97708172-2	chr11	97708072	97708272	+	622.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011971, intron 3 of 5)	intron (NM_011971, intron 3 of 5)	4738.0	NM_011971	26446.0	Mm.21874	NM_011971	ENSMUSG00000069744	Psmb3	AL033320|C10-II	proteasome (prosome, macropain) subunit, beta type 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-65096354-2	chr14	65096254	65096454	+	839.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_018788, intron 1 of 6)	intron (NM_018788, intron 1 of 6)	1752.0	NM_018788	54616.0	Mm.103748	NM_018788	ENSMUSG00000021978	Extl3	2900009G18Rik|AU040105|Ext1l|mKIAA0519	exostoses (multiple)-like 3	protein-coding	-2.18243820993087	-2.15538464093652	-2.16356586349869	-2.17028616330028	-2.18053909940952	-2.15361173587851	-2.16171381403791	-2.0403552525549	0.759018020146679	0.829933115115583	1
Merged-chr17-27564211-1	chr17	27564111	27564311	+	704.0	f1_balb.idr	TTS (NM_001166536)	TTS (NM_001166536)	1516.0	NM_001002895	106672.0	Mm.61488	NM_001002895	ENSMUSG00000062753	AI413582	AI854251|Smim29	expressed sequence AI413582	protein-coding	0.927043349212338	2.0804662977875	1.22574740664436	0.959258722585243	1.73479998652049	2.55236514535629	1.23483344203465	2.14462591866086	1.75548009334258	0.149252142939329	0.600780768615322
Merged-chr9-122357233-4	chr9	122357094	122357294	+	879.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359207, intron 1 of 4)	intron (NM_001359207, intron 1 of 4)	5578.0	NM_026179	67469.0	Mm.280254	NM_026179	ENSMUSG00000032540	Abhd5	1300003D03Rik|2010002J10Rik|CDS|CGI-58|IECN5|NCIE2	abhydrolase domain containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-96666879-4	chr15	96666788	96666988	+	873.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx10|LINE|L1	-23975.0	NM_001166458	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-55622267-2	chr4	55622215	55622415	+	650.75	f0_balb.idr|f1_balb.idr	Intergenic	L2c|LINE|L2	-89840.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	2.29621157725332	1.95113937206717	2.71346999084105	1.8319267999284	2.68875243129708	3.50585029489563	2.2494779249176	2.02190410987512	1.03389633344587	0.218143272323818	0.709034580460856
Merged-chr15-5495309-4	chr15	5495205	5495405	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1013.0	NR_045274	71432.0	Mm.291087	NR_045274	ENSMUSG00000110018	5430437J10Rik	-	RIKEN cDNA 5430437J10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-43474253-4	chr1	43474135	43474335	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010879, intron 1 of 4)	intron (NM_010879, intron 1 of 4)	28484.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-26669732-7	chr14	26669639	26669839	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_106132)	promoter-TSS (NR_106132)	107.0	NM_178668	211948.0	Mm.290758	NM_178668	ENSMUSG00000043702	Pde12	2'-PDE|E430028B21Rik	phosphodiesterase 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-10794077-4	chr18	10793962	10794162	+	991.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144860, intron 13 of 20)	intron (NM_144860, intron 13 of 20)	-8510.0	NR_029781	723959.0		NR_029781	ENSMUSG00000106348	Mir1a-2	Mir1-2|Mirn1-2|mir-1a-2|mmu-mir-1-2|mmu-mir-1a-2	microRNA 1a-2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-112433980-2	chr2	112433880	112434080	+	854.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21045.0	NM_133749	73024.0	Mm.268027	NM_133749	ENSMUSG00000055943	Emc7	2900064A13Rik|AI451465|ORF3|c11orf3	ER membrane protein complex subunit 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-106365513-4	chr9	106365427	106365627	+	825.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-3105.0	NM_153459	235584.0	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-70831082-2	chr17	70830982	70831182	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15695.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-77089368-2	chr8	77089268	77089468	+	850.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083906, intron 3 of 8)	RLTR20A3_MM|LTR|ERVK	186860.0	NM_001083906	110784.0	Mm.324393	NM_001083906	ENSMUSG00000031618	Nr3c2	MR|Mlr	nuclear receptor subfamily 3, group C, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-3359842-1	chr13	3359742	3359942	+	718.0	f1_balb.idr	Intergenic	CpG	-118461.0	NR_015522	76937.0	Mm.487240	NR_015522	ENSMUSG00000097709	2810429I04Rik	AI256682	RIKEN cDNA 2810429I04 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-33305235-2	chr12	33305135	33305335	+	670.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033436, intron 1 of 7)	intron (NM_001033436, intron 1 of 7)	2720.0	NM_001033436	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-36821688-4	chr16	36821590	36821790	+	898.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134111, intron 2 of 5)	intron (NM_134111, intron 2 of 5)	6569.0	NM_001113401	106389.0	Mm.432078	NM_134111	ENSMUSG00000022838	Eaf2	AW048865|FESTA-L|FESTA-S|Festa|Traits|U19	ELL associated factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-155373455-4	chr2	155373345	155373545	+	905.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME1|LINE|L1	-8411.0	NM_178111	68728.0	Mm.293605	NM_178111	ENSMUSG00000038375	Trp53inp2	1110029F20Rik|Tp53inp2	transformation related protein 53 inducible nuclear protein 2	protein-coding	2.46480609924171	1.69895196123367	2.70095681088907	3.43217087040804	3.35232395306526	3.8928331036435	3.83074944641173	4.16408626030914	1.76152330508878	0.00630225968150881	0.0792846944797709
Merged-chr6-38714169-4	chr6	38714031	38714231	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010433, intron 12 of 14)	intron (NM_010433, intron 12 of 14)	51062.0	NM_001101507	665180.0	Mm.349066	NM_001101507	ENSMUSG00000079598	Clec2l	AI414054|AW122724|Gm1064	C-type lectin domain family 2, member L	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128626826-4	chr10	128626704	128626904	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013765)	promoter-TSS (NM_013765)	-298.0	NM_013765	27370.0	Mm.32118	NM_013765	ENSMUSG00000025362	Rps26	-	ribosomal protein S26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-69163852-2	chr3	69163752	69163952	+	802.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	32619.0	NR_126533	381452.0	Mm.331067	NM_001243000	ENSMUSG00000094763	Gm1647	-	predicted gene 1647	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-57791544-2	chr8	57791444	57791644	+	691.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175032, intron 11 of 11)	intron (NM_175032, intron 11 of 11)	-138489.0	NM_144731	108150.0	Mm.62886	NM_144731	ENSMUSG00000031608	Galnt7	AI225872	polypeptide N-acetylgalactosaminyltransferase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-98318698-2	chr12	98318598	98318798	+	589.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50063.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-62986459-2	chr1	62986359	62986559	+	571.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	127808.0	NM_001081436	227195.0	Mm.74718	NM_001081436	ENSMUSG00000040865	Ino80d	7330405I11|A430093A21Rik|BC010584	INO80 complex subunit D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-120449812-4	chr1	120449716	120449916	+	908.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55208.0	NM_010766	17167.0	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-49159135-4	chr7	49159048	49159248	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_154465, intron 3 of 3)	intron (NR_154465, intron 3 of 3)	3010.0	NR_154465	108167511.0	Mm.400599	NR_154465		9130015G15Rik	-	RIKEN cDNA 9130015G15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-17838017-2	chr13	17837917	17838117	+	721.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-32920.0	NM_027118	69562.0	Mm.193924	NM_027118	ENSMUSG00000041297	Cdk13	2310015O17Rik|Cdc2l5	cyclin-dependent kinase 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111166451-4	chr12	111166358	111166558	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286122)	promoter-TSS (NM_001286122)	88.0	NM_011632	22031.0	Mm.27431	NM_011632	ENSMUSG00000021277	Traf3	AI528849|CAP-1|CD40bp|CRAF1|LAP1|T-BAM|amn	TNF receptor-associated factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-25225034-4	chr8	25224941	25225141	+	820.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23499.0	NM_177089	320165.0	Mm.308452	NM_177089	ENSMUSG00000065954	Tacc1	4833447E04Rik|AA960202|B230378H13Rik	transforming, acidic coiled-coil containing protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-50769648-2	chr11	50769548	50769748	+	576.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175643, intron 5 of 21)	intron (NM_175643, intron 5 of 21)	58083.0	NM_013922	30944.0	Mm.103674	NM_013922	ENSMUSG00000044807	Zfp354c	5330421P20Rik|AJ18|AW743325|Kid3|Tcf17l2|Znf354c|mKIAA4218	zinc finger protein 354C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-5788463-4	chr11	5788343	5788543	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146308)	promoter-TSS (NM_001146308)	-40.0	NM_001146309	13169.0	Mm.256925	NM_013810	ENSMUSG00000020476	Dbnl	Abp1|SH3P7|mAbp1	drebrin-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-34033476-2	chr11	34033376	34033576	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_155520, intron 4 of 4)	MIR3|SINE|MIR	-13452.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-74847576-2	chr11	74847476	74847676	+	669.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	16652.0	NM_010813	17428.0	Mm.3759	NM_010813	ENSMUSG00000000282	Mnt	Rox|bHLHd3	max binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59146261-4	chr15	59146158	59146358	+	860.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64232.0	NM_144800	211401.0	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75576041-1	chr11	75575941	75576141	+	769.0	f1_balb.idr	3' UTR (NM_173388, exon 14 of 14)	3' UTR (NM_173388, exon 14 of 14)	-12038.0	NM_008850	18738.0	Mm.3128	NM_008850	ENSMUSG00000017781	Pitpna	Pitpn|vb|vibrator	phosphatidylinositol transfer protein, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-64065381-3	chr11	64065278	64065478	+	909.4722289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178379, intron 3 of 6)	intron (NM_178379, intron 3 of 6)	14094.0	NM_178379	70383.0	Mm.340211	NM_178379	ENSMUSG00000042148	Cox10	2410004F01Rik|AU042636	cytochrome c oxidase assembly protein 10	protein-coding	4.74586078962231	4.02597346670389	5.25772965280122	4.02379590165009	3.31398984291946	2.33557352127607	2.23561237242989	2.54057605681917	-2.7510536590107	1.89409602717015e-06	0.000111035981110688
Merged-chr8-38659799-1	chr8	38659699	38659899	+	594.0	f1_c57bl6.idr	intron (NM_145841, intron 1 of 7)	intron (NM_145841, intron 1 of 7)	1709.0	NM_145841	244431.0	Mm.210388	NM_145841	ENSMUSG00000039539	Sgcz	C230085N17Rik	sarcoglycan zeta	protein-coding	2.09455081278808	1.45392582564215	1.40545321295692	2.2899823165799	1.78941043039505	1.00881629017971	1.41628448589127	0.970843792620265	-1.64904070444242	0.173287412467321	0.640902961210202
Merged-chr10-66848296-3	chr10	66848243	66848443	+	760.866638	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	72041.0	NR_138560	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-118846730-3	chr12	118846590	118846790	+	941.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177082, intron 1 of 2)	intron (NM_177082, intron 1 of 2)	361.0	NM_177082	320145.0	Mm.51682	NM_177082	ENSMUSG00000048562	Sp8	D930049B17Rik|mBtd	trans-acting transcription factor 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-103447272-2	chr2	103447172	103447372	+	701.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010125, intron 4 of 6)	intron (NM_010125, intron 4 of 6)	23204.0	NM_010125	13711.0	Mm.20888	NM_010125	ENSMUSG00000027186	Elf5	ESE-2|ESE-5|ESE-5.	E74-like factor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-131096638-3	chr2	131096535	131096735	+	696.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-9870.0	NM_011426	20612.0	Mm.1374	NM_011426	ENSMUSG00000027322	Siglec1	Cd169|Siglec-1|Sn	sialic acid binding Ig-like lectin 1, sialoadhesin	protein-coding	1.77758871835714	1.98359182725473	2.30948839593431	2.24422030274092	2.04146662813705	2.51732661561962	1.3148855608258	2.61447157295351	0.315624756310237	0.739851710344367	0.998431161219273
Merged-chr10-93244589-1	chr10	93244489	93244689	+	616.666687	f1_balb.idr	Intergenic	Intergenic	66570.0	NM_001322268	13713.0	Mm.4454	NM_013508	ENSMUSG00000008398	Elk3	D430049E23Rik|Erp|Etrp|Net|Sap-2	ELK3, member of ETS oncogene family	protein-coding	1.15051259982361	0.74590772265478	0.732744853304261	1.3422142140282	1.62956039433187	0.748844378420231	1.71312202365456	1.08612796618917	1.34702412184309	0.35599014858504	0.853664850644233
Merged-chr8-35123466-4	chr8	35123355	35123555	+	982.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-157765.0	NM_175091	21951.0	Mm.88364	NM_175091	ENSMUSG00000031529	Tnks	4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	protein-coding	5.03005276580852	4.43335310122038	4.85346251605937	5.09287633735765	4.54793476657395	3.96556494735446	3.31916987576526	4.00729304744363	-1.06496290233154	0.00963430389559839	0.106164617700304
Merged-chr8-14911600-4	chr8	14911494	14911694	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172751)	promoter-TSS (NM_172751)	-69.0	NM_172751	234094.0	Mm.240298	NM_172751	ENSMUSG00000071176	Arhgef10	6430549H08Rik|mKIAA0294	Rho guanine nucleotide exchange factor (GEF) 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-11547219-3	chr11	11547083	11547283	+	922.944458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57917.0	NM_028669	73862.0	Mm.159077	NM_028669	ENSMUSG00000020191	Spata48	4930415F15Rik	spermatogenesis associated 48	protein-coding	0.202067609678059	0.548357994960844	0.507351119584413	0.475230089634195	0.0693894297100555	0.0847428095824614	0.0797241518160446	0.231491075610071	-3.07097845251722	0.120637195968299	1
Merged-chr6-120472095-4	chr6	120472001	120472201	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008359, exon 2 of 13)	exon (NM_008359, exon 2 of 13)	8904.0	NM_008359	16172.0	Mm.4481	NM_008359	ENSMUSG00000002897	Il17ra	AW538159|Cdw217|Il17r|VDw217	interleukin 17 receptor A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-75034392-4	chr14	75034299	75034499	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198642, intron 2 of 13)	intron (NM_198642, intron 2 of 13)	18372.0	NM_198642	271221.0	Mm.320280	NM_198642	ENSMUSG00000034959	Rubcnl	5031414D18Rik|Gm744|Gm911|Kiaa0226l	RUN and cysteine rich domain containing beclin 1 interacting protein like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-32722464-1	chr5	32722364	32722564	+	573.0	f1_balb.idr	Intergenic	Intergenic	23878.0	NM_001347332	320951.0	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	1.31575469310306	0.984102052126394	0.956358724330236	0.934038866447237	2.43483070523307	1.86470564615004	2.72759040276431	1.86213728873705	4.23155287504563	0.00163762120694114	0.0290081386430312
Merged-chr17-71684420-4	chr17	71684342	71684542	+	979.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177087, intron 1 of 19)	intron (NM_177087, intron 1 of 19)	11181.0	NM_177087	320159.0	Mm.187372	NM_177087	ENSMUSG00000045761	Togaram2	4632412N22Rik|Fam179a	TOG array regulator of axonemal microtubules 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-75033828-7	chr8	75033735	75033935	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001136259, intron 1 of 15)	CpG	149.0	NM_011622	21968.0	Mm.1967	NM_011622	ENSMUSG00000042870	Tom1	-	target of myb1 trafficking protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-105984321-3	chr1	105984221	105984421	+	802.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151625, intron 2 of 2)	intron (NR_151625, intron 2 of 2)	5961.0	NR_151625	635504.0	Mm.359717	NR_151625		Gm7160	EG635504	predicted gene 7160	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-39615002-4	chr1	39614891	39615091	+	984.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36191.0	NM_170597	263764.0	Mm.122091	NM_170597	ENSMUSG00000050967	Creg2	A830098L22Rik	cellular repressor of E1A-stimulated genes 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55585282-4	chr14	55585176	55585376	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033146)	promoter-TSS (NM_033146)	-22.0	NM_033146	85308.0	Mm.40667	NM_033146	ENSMUSG00000022217	Emc9	1500005A01Rik|Cgi112|Fam158a	ER membrane protein complex subunit 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-20794115-4	chr13	20794012	20794212	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001281854)	promoter-TSS (NM_001281854)	-1.0	NM_001281854	27052.0	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	4.96377264573121	4.28311294434451	3.92199409492321	4.77076872099584	4.69312746845045	4.67173442097065	4.80648261939258	4.63139271621268	0.179183614098071	0.636346324176208	0.982417279970648
Merged-chr11-98678759-2	chr11	98678659	98678859	+	790.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-3795.0	NM_009439	22123.0	Mm.12194	NM_009439	ENSMUSG00000017221	Psmd3	AI255837|AntP91a|D11Bwg1349e|Psd3|Tstap91a	proteasome (prosome, macropain) 26S subunit, non-ATPase, 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-42680774-4	chr10	42680687	42680887	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172416, intron 1 of 5)	intron (NM_172416, intron 1 of 5)	1871.0	NM_172416	14628.0	Mm.46636	NM_172416	ENSMUSG00000038280	Ostm1	1200002H13Rik|HSPC019|gl	osteopetrosis associated transmembrane protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-148213069-2	chr6	148212969	148213169	+	717.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286560)	promoter-TSS (NM_001286560)	-695.0	NM_001286560	67456.0	Mm.59812	NM_026168	ENSMUSG00000030304	Ergic2	1200009B18Rik|4930572C01Rik|AA408438|Ptx1	ERGIC and golgi 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-10280380-4	chr1	10280280	10280480	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47710.0	NM_001102430	211673.0	Mm.229141	NM_001102430	ENSMUSG00000067851	Arfgef1	ARFGEP1|BIG1|D130059B05Rik|D730028O18Rik|P200	ADP-ribosylation factor guanine nucleotide-exchange factor 1(brefeldin A-inhibited)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-18453174-4	chr9	18453106	18453306	+	948.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_028935)	TTS (NM_028935)	20353.0	NM_028935	72230.0	Mm.289689	NM_028160	ENSMUSG00000074500	Zfp558	1700007A21Rik|4932704I17Rik|Zfp558-ps	zinc finger protein 558	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70755849-3	chr11	70755750	70755950	+	877.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8597.0	NM_177565	193043.0	Mm.40966	NM_177565	ENSMUSG00000043602	Zfp3	AI854635|B230309J24|Fnp-1|Zfp-3	zinc finger protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122994641-4	chr5	122994553	122994753	+	972.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045820, intron 2 of 2)	intron (NR_045820, intron 2 of 2)	5299.0	NR_045820	109202.0	Mm.30769	NM_175405	ENSMUSG00000056735	A930024E05Rik	-	RIKEN cDNA A930024E05 gene	ncRNA	0.768510252680263	0.825414907975318	1.04080590378322	1.01312934077428	1.51914187248931	1.74149173947387	2.2119138541214	1.35648166610528	3.63975667781167	0.0108647749264452	0.115588915551316
Merged-chr3-104994097-4	chr3	104994060	104994260	+	834.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32451.0	NM_009520	22414.0	Mm.10740	NM_009520	ENSMUSG00000027840	Wnt2b	Wnt13	wingless-type MMTV integration site family, member 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-123999947-3	chr9	123999844	124000044	+	860.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21536.0	NM_007718	12770.0	Mm.423532	NM_007718	ENSMUSG00000064039	Ccr1l1	Cmkbr1l1	chemokine (C-C motif) receptor 1-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-11919394-2	chr10	11919294	11919494	+	638.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17A2|LTR|ERVK	310170.0	NM_013898	30058.0	Mm.214504	NM_013898	ENSMUSG00000048007	Timm8a1	DXHXS1274E|Ddp1|Fci-12|Tim8a|Timm8a	translocase of inner mitochondrial membrane 8A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6302685-3	chr19	6302584	6302784	+	859.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3773.0	NM_001033342	240505.0	Mm.329622	NM_001033342	ENSMUSG00000024769	Cdc42bpg	BC046418|MRCKgamma	CDC42 binding protein kinase gamma (DMPK-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115132035-3	chr11	115131931	115132131	+	923.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001169153, intron 1 of 6)	L2|LINE|L2	1961.0	NM_001347648	246746.0	Mm.277387	NM_145634	ENSMUSG00000047798	Cd300lf	CLIM1|CLM-1|CLM1|Digr2|F730004D16Rik|IREM1|IgSF13|LMIR3|Pigr3	CD300 molecule like family member F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-21879823-4	chr4	21879723	21879923	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356348)	promoter-TSS (NM_001356348)	-30.0	NM_001356348	230027.0	Mm.5662	NM_172687	ENSMUSG00000028247	Coq3	4732433J24|C77934	coenzyme Q3 methyltransferase	protein-coding	3.45988363545165	2.46647716645216	2.38316631046061	2.45259551511581	2.56884067737986	2.98698905433017	3.15377448346613	2.17167192958981	-0.0414099019871492	0.956038217843981	0.998431161219273
Merged-chr1-136466289-4	chr1	136466196	136466396	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1552.0	NM_001287179	381293.0	Mm.458468	NM_001081258	ENSMUSG00000041498	Kif14	D1Ertd367e|E130203M01	kinesin family member 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-138214061-3	chr4	138213958	138214158	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2554.0	NM_001122896	15441.0	Mm.348429	NM_010470	ENSMUSG00000028759	Hp1bp3	Hp1bp74	heterochromatin protein 1, binding protein 3	protein-coding	3.37382612233528	2.65657930701513	1.58523347588459	1.52051517056068	4.43809928832972	4.28102925099426	4.62743441797976	4.12414165001321	2.76088332578363	2.16745813133013e-05	0.000866838755323298
Merged-chr18-53245564-4	chr18	53245468	53245668	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029394)	promoter-TSS (NM_029394)	-94.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-77933714-2	chr18	77933614	77933814	+	589.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4753.0	NM_001195633	100502841.0	Mm.297782	NM_001195633	ENSMUSG00000039840	Epg5	4732475F16|5430411K18Rik|AI661957|AW456499|mKIAA1632	ectopic P-granules autophagy protein 5 homolog (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-32491229-4	chr19	32491167	32491367	+	975.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010799, intron 1 of 4)	intron (NM_010799, intron 1 of 4)	5498.0	NM_010799	17330.0	Mm.255116	NM_010799	ENSMUSG00000024896	Minpp1	AA408516	multiple inositol polyphosphate histidine phosphatase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-3526452-4	chr13	3526358	3526558	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11617.0	NM_008112	14569.0	Mm.153226	NM_008112	ENSMUSG00000021218	Gdi2	GDI-B|GDIB|Gdi3	guanosine diphosphate (GDP) dissociation inhibitor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-20054089-4	chr10	20053994	20054194	+	932.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008580, intron 8 of 29)	intron (NM_008580, intron 8 of 29)	-94826.0	NM_008635	17761.0	Mm.20928	NM_008635	ENSMUSG00000019996	Map7	E-MAP-115|MAP-7|Mtap7|R75000|mshi|mste|ste	microtubule-associated protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4729209-3	chr16	4729115	4729315	+	909.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001136066, intron 1 of 5)	RSINE1|SINE|B4	2854.0	NM_001136066	15369.0	Mm.272866	NM_010443	ENSMUSG00000004070	Hmox2	HO-2|HO2	heme oxygenase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-42511279-4	chr18	42511166	42511366	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_110344)	promoter-TSS (NR_110344)	-221.0	NM_001039474	56070.0	Mm.270511	NM_001039474	ENSMUSG00000024498	Tcerg1	2410022J09Rik|2900090C16Rik|AI428505|CA150b|FBP23|FBP28|Taf2s|ca150|p144	transcription elongation regulator 1 (CA150)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-126683283-2	chr4	126683183	126683383	+	555.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011970, intron 1 of 5)	RMER6A|LTR|ERVK	5640.0	NM_011970	26445.0	Mm.22233	NM_011970	ENSMUSG00000028837	Psmb2	AU045357|AW108089|C7-I|D4Wsu33e|HC7-I	proteasome (prosome, macropain) subunit, beta type 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114888966-2	chr11	114888866	114889066	+	614.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-1075.0	NM_001347654	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-92702179-1	chr16	92702079	92702279	+	922.0	f1_c57bl6.idr	intron (NM_001111022, intron 2 of 6)	intron (NM_001111022, intron 2 of 6)	-4850.0	NM_009821	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.216375959688873	0.369162984778847	-0.234006632431163	-0.237346888044145	0.0222373129654142	-0.228688760383177	-0.23305063207821	-0.236763791033838	-2.07318320105528	0.397941548040892	1
Merged-chr6-34988120-2	chr6	34988020	34988220	+	690.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10121.0	NM_001025573	243753.0	Mm.440221	NM_001025573	ENSMUSG00000029847	Slc23a4	2010107G12Rik|Gm468	solute carrier family 23 member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-72916783-1	chr5	72916683	72916883	+	540.0	f1_c57bl6.idr	intron (NM_153567, intron 1 of 8)	intron (NM_153567, intron 1 of 8)	2421.0	NM_153567	75991.0	Mm.121285	NM_153567	ENSMUSG00000036087	Slain2	5033405K12Rik|8030444K12Rik|AI596370	SLAIN motif family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-57535000-1	chr16	57534900	57535100	+	611.0	f0_balb.idr	intron (NM_001040397, intron 4 of 4)	MER58B|DNA|hAT-Charlie	-14242.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-37506567-2	chr19	37506467	37506667	+	751.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41313.0	NR_131009	78640.0	Mm.234265	NR_131008		1700122C19Rik	-	RIKEN cDNA 1700122C19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32350640-4	chr2	32350544	32350744	+	880.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010065, intron 1 of 20)	intron (NM_010065, intron 1 of 20)	2685.0	NM_001301737	13429.0	Mm.44736	NM_010065	ENSMUSG00000026825	Dnm1	AI838169|Dnm|Ftfl|mKIAA4093	dynamin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-69731488-2	chr14	69731388	69731588	+	564.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_134078, intron 1 of 9)	MIRc|SINE|MIR	1082.0	NM_134078	105513.0	Mm.159637	NM_134078	ENSMUSG00000034190	Chmp7	4930596K11Rik|6330407G04Rik|AI450338|AW550775	charged multivesicular body protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-75038148-4	chr9	75038097	75038297	+	860.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152135, intron 2 of 4)	intron (NR_152135, intron 2 of 4)	465.0	NM_021548	59046.0	Mm.247837	NM_021548	ENSMUSG00000007656	Arpp19	19kDa|2700024H10Rik|ARPP-19|AW559096|Arpp12	cAMP-regulated phosphoprotein 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-30390066-7	chr16	30389960	30390160	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1530.0	NM_001128096	224088.0	Mm.8924	NM_001128094	ENSMUSG00000022533	Atp13a3	AU022875|Gm1745|Gm541|Gm542	ATPase type 13A3	protein-coding	4.93060787365779	4.84152606668699	5.15940081400693	4.61470176996234	4.84266012089728	4.61434897895763	5.12662370670509	4.76496184861241	-0.0588906364395197	0.85935185808345	0.998431161219273
Merged-chr18-39645701-2	chr18	39645601	39645801	+	657.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-127796.0	NM_011033	18459.0	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-121036465-2	chr9	121036365	121036565	+	588.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177589, intron 35 of 36)	intron (NM_177589, intron 35 of 36)	81379.0	NR_106058	102465661.0		NR_106058	ENSMUSG00000106193	Mir7090	mmu-mir-7090	microRNA 7090	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-82327587-2	chr12	82327487	82327687	+	610.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001167983, intron 4 of 23)	(CAAAAA)n|Simple_repeat|Simple_repeat	16238.0	NM_172579	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-84020712-4	chr6	84020619	84020819	+	966.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310152, intron 1 of 53)	intron (NM_001310152, intron 1 of 53)	1333.0	NM_021469	26903.0	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-31193176-4	chr5	31193071	31193271	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001127355)	promoter-TSS (NM_001127355)	-32.0	NM_010122	13667.0	Mm.29394	NM_010122	ENSMUSG00000029145	Eif2b4	Eif2b	eukaryotic translation initiation factor 2B, subunit 4 delta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117087588-4	chr11	117087486	117087686	+	962.775024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	10238.0	NR_105853	102465258.0		NR_105853	ENSMUSG00000104740	Mir6516	mmu-mir-6516	microRNA 6516	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-56702679-2	chr19	56702579	56702779	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19693.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99101894-4	chr7	99101809	99102009	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 3 of 14)	intron (NM_178635, intron 3 of 14)	39235.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	5.30351678527801	4.49337539148941	5.16326214464114	5.25403356475568	4.58196662699706	5.28217804975777	5.58149703019695	4.9152638294052	0.0426943293273381	0.90081014741216	0.998431161219273
Merged-chr2-180274132-3	chr2	180274012	180274212	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145851)	promoter-TSS (NM_145851)	-647.0	NM_145851	252966.0	Mm.386884	NM_145851	ENSMUSG00000038990	Cables2	ik3-2	CDK5 and Abl enzyme substrate 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-103775379-1	chr10	103775279	103775479	+	548.0	f1_c57bl6.idr	Intergenic	Lx|LINE|L1	-367608.0	NM_001270898	100861880.0	Mm.441727	NM_001270898	ENSMUSG00000091779	Gm21293	-	predicted gene, 21293	protein-coding	0.812133859581291	0.426303260650251	1.03395788255093	0.410323203728721	1.39836677246321	0.6430534453109	0.419305276197241	0.595284624344226	0.666060576075368	0.696143888017184	1
Merged-chr11-119082059-2	chr11	119081959	119082159	+	564.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_007625, exon 5 of 5)	exon (NM_007625, exon 5 of 5)	4178.0	NM_007625	12418.0	Mm.268070	NM_007625	ENSMUSG00000039989	Cbx4	MPc2|PC2	chromobox 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126800654-2	chr8	126800554	126800754	+	606.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48366.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5654972-2	chr17	5654872	5655072	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 2 of 8)	(CCA)n|Simple_repeat|Simple_repeat	-143685.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-77903725-4	chr14	77903574	77903774	+	792.216675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178825)	promoter-TSS (NM_178825)	-565.0	NM_178825	108670.0	Mm.68134	NM_029495	ENSMUSG00000022014	Epsti1	2310046K10Rik|5033415K03Rik|BRESI1	epithelial stromal interaction 1 (breast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36815292-3	chr1	36815188	36815388	+	859.966675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018872, intron 25 of 40)	intron (NM_018872, intron 25 of 40)	36304.0	NM_001289612	22637.0	Mm.8038	NM_009539	ENSMUSG00000026117	Zap70	Srk|ZAP-70|mrtle|mur	zeta-chain (TCR) associated protein kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55458513-2	chr14	55458413	55458613	+	633.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20245.0	NM_001037938	28200.0	Mm.27427	NM_030686	ENSMUSG00000022210	Dhrs4	AI043103|AI790593|CR|D14Ucla2|NDRD|PHCR|PSCD|RRD|mouNRDR	dehydrogenase/reductase (SDR family) member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3912889-4	chr19	3912793	3912993	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144870)	promoter-TSS (NM_144870)	-119.0	NM_001271444	225887.0	Mm.44227	NM_144870	ENSMUSG00000059734	Ndufs8	BC021616|CI-23kD|TYKY	NADH dehydrogenase (ubiquinone) Fe-S protein 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-27347477-3	chr14	27347383	27347583	+	608.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289687, intron 1 of 9)	intron (NM_001289687, intron 1 of 9)	11446.0	NM_001289687	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-87974941-4	chr17	87974830	87975030	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010830)	promoter-TSS (NM_010830)	-120.0	NM_010830	17688.0	Mm.18210	NM_010830	ENSMUSG00000005370	Msh6	AU044881|AW550279|GTBP|Gtmbp	mutS homolog 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-14823385-3	chr8	14823294	14823494	+	733.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172910, intron 10 of 15)	intron (NM_172910, intron 10 of 15)	-65142.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	-0.565191593622735	-0.553388767447319	0.124361340136679	-0.126224872536957	-0.564454658030392	-0.552517407728741	-0.556402078666166	-0.559716919111501	-3.44543098151196	0.208849830209699	1
Merged-chr4-88084338-2	chr4	88084238	88084438	+	636.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10292.0	NM_001081184	230393.0	Mm.287210	NM_001081184	ENSMUSG00000038368	Focad	-	focadhesin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-110569251-4	chr13	110569130	110569330	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	174186.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	4.27689310360204	4.95441460778109	4.84610446492724	3.73960718542768	3.64636251714691	3.93116291243671	4.4988588453029	4.03951724175259	-0.613594622728504	0.171145208259942	0.638755914366425
Merged-chr13-36506482-2	chr13	36506382	36506582	+	713.150024	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039189, intron 5 of 5)	intron (NM_001039189, intron 5 of 5)	227995.0	NM_153529	68404.0	Mm.232930	NM_153529	ENSMUSG00000039114	Nrn1	0710008J23Rik|Cpg15|Nrn	neuritin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-105865099-3	chr1	105864987	105865187	+	852.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	84364.0	NM_009399	21934.0	Mm.6251	NM_009399	ENSMUSG00000026321	Tnfrsf11a	Ly109|ODFR|OFE|Rank|TRANCE-R|mRANK	tumor necrosis factor receptor superfamily, member 11a, NFKB activator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-164760600-4	chr2	164760500	164760700	+	790.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133763, intron 8 of 12)	MTD|LTR|ERVL-MaLR	-9329.0	NM_026785	68612.0	Mm.89830	NM_026785	ENSMUSG00000001403	Ube2c	1110015A16Rik|D2Ertd695e	ubiquitin-conjugating enzyme E2C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-35831484-2	chr12	35831384	35831584	+	870.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-94137.0	NM_207531	403205.0	Mm.190508	NM_207531	ENSMUSG00000036231	Agr3	BCMP11|E030025L21Rik|Gm888	anterior gradient 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-154787767-3	chr1	154787633	154787833	+	619.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61813.0	NM_009782	12290.0	Mm.267517	NM_009782	ENSMUSG00000004110	Cacna1e	A430040I15|BII|Cach6|Cacnl1a6|Cav2.3|Cchra1|alpha1E	calcium channel, voltage-dependent, R type, alpha 1E subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-70752379-2	chr17	70752279	70752479	+	561.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347411, intron 9 of 14)	intron (NM_001347411, intron 9 of 14)	94398.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	1.61935876432488	2.32181378473414	1.75346815906514	1.13281875293295	1.87699896257195	2.33993899638204	2.2578371240566	1.36480280046156	0.630172652986981	0.553808035536663	0.959833585208582
Merged-chr8-121635751-3	chr8	121635657	121635857	+	686.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080855, intron 1 of 12)	intron (NM_080855, intron 1 of 12)	16176.0	NM_080855	142682.0	Mm.103202	NM_080855	ENSMUSG00000061410	Zcchc14	AA792890|BDG29	zinc finger, CCHC domain containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-121344223-2	chr5	121344123	121344323	+	583.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_181421, intron 59 of 75)	intron (NM_181421, intron 59 of 75)	41186.0	NM_001359947	231712.0	Mm.20488	NM_172275	ENSMUSG00000042726	Trafd1	1110008K06Rik|Fln29	TRAF type zinc finger domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117018637-1	chr11	117018537	117018737	+	546.0	f0_balb.idr	Intergenic	Intergenic	-58146.0	NR_027059	76972.0	Mm.309167	NR_027059	ENSMUSG00000086859	Snhg20	2810008D09Rik	small nucleolar RNA host gene 20	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-126035563-4	chr4	126035446	126035646	+	937.9916380000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252651, intron 7 of 14)	intron (NM_001252651, intron 7 of 14)	10887.0	NM_001252651	12986.0	Mm.271701	NM_007782	ENSMUSG00000028859	Csf3r	Cd114|Csfgr|G-CSF-R|G-CSFR	colony stimulating factor 3 receptor (granulocyte)	protein-coding	-1.27413311947854	-1.24644865794383	-1.09394607474543	-0.840902403408443	-1.27369540513762	-1.24420577222712	-1.25445563602962	-1.26377861929758	-2.39351388450012	0.472438750839249	1
Merged-chr17-83323101-2	chr17	83323001	83323201	+	784.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27830.0	NM_001114361	78798.0	Mm.295565	NM_199466	ENSMUSG00000032624	Eml4	4930443C24Rik|AI644019	echinoderm microtubule associated protein like 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-22122420-2	chr16	22122320	22122520	+	597.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183029, intron 2 of 15)	intron (NM_183029, intron 2 of 15)	40879.0	NM_183029	319765.0	Mm.489442	NM_183029	ENSMUSG00000033581	Igf2bp2	C330012H03Rik|IMP-2|Imp2|Neilsen	insulin-like growth factor 2 mRNA binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-117224527-3	chr13	117224433	117224633	+	796.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010330, intron 1 of 8)	intron (NM_010330, intron 1 of 8)	3960.0	NM_010330	13723.0	Mm.274926	NM_010330	ENSMUSG00000021728	Emb	AL022799|Gp70	embigin	protein-coding	1.63094652311714	2.93127585595161	3.01607647303073	3.01177848834338	1.84757199581606	3.05217325812767	3.12233019314776	2.4251797421354	-0.0972078710361664	0.904646114805348	0.998431161219273
Merged-chr11-16752224-3	chr11	16752162	16752362	+	686.049988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007912)	promoter-TSS (NM_007912)	59.0	NM_007912	13649.0	Mm.8534	NM_007912	ENSMUSG00000020122	Egfr	9030024J15Rik|AI552599|Erbb|Errb1|Errp|Wa5|wa-2|wa2	epidermal growth factor receptor	protein-coding	0.348074499641934	0.0364423682182431	0.0271864895280666	0.0199229449717314	0.198501456865207	0.0385050334776867	0.257223102505449	1.42596313179379	2.98049863352974	0.134583687784059	1
Merged-chr6-116186693-4	chr6	116186600	116186800	+	816.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177412, intron 1 of 5)	intron (NM_177412, intron 1 of 5)	6674.0	NM_177412	330401.0	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-31892256-2	chr11	31892155	31892355	+	675.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290678, intron 2 of 7)	RMER4B|LTR|ERVK	21315.0	NM_026252	67579.0	Mm.339792	NM_026252	ENSMUSG00000020300	Cpeb4	Cpe-bp4|Cpeb-4|mCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding	1.41962349669145	1.622809602772	0.79686834985819	0.786350375040043	1.09225369648391	1.63698286840081	1.0092080818441	1.40789069373428	0.354735964677213	0.795756359429755	0.998431161219273
Merged-chr15-73023077-4	chr15	73023003	73023203	+	982.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029640, intron 6 of 21)	intron (NM_029640, intron 6 of 21)	32709.0	NM_029640	76510.0	Mm.158902	NM_029640	ENSMUSG00000047921	Trappc9	1810044A24Rik|2900005P22Rik|4632408O18Rik|Ibp|Nibp|TRS130|mKIAA1882	trafficking protein particle complex 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117780828-4	chr11	117780726	117780926	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145439)	promoter-TSS (NM_145439)	-134.0	NM_145439	217353.0	Mm.286963	NM_145439	ENSMUSG00000025572	Tmc6	D11Ertd204e|EVER1	transmembrane channel-like gene family 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-164960791-3	chr2	164960692	164960892	+	945.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355480)	promoter-TSS (NM_001355480)	-54.0	NM_001355481	57138.0	Mm.252987	NM_020333	ENSMUSG00000017740	Slc12a5	KCC2|mKIAA1176	solute carrier family 12, member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-77786413-4	chr11	77786250	77786450	+	986.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011586, intron 1 of 39)	intron (NM_011586, intron 1 of 39)	9115.0	NM_001291212	360013.0	Mm.341248	NM_011586	ENSMUSG00000000631	Myo18a	MAJN|MyoPDZ|MysPDZ|SP-R210	myosin XVIIIA	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-148599654-4	chr2	148599551	148599751	+	861.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72964.0	NM_019761	56488.0	Mm.34663	NM_019761	ENSMUSG00000036992	Nxt1	1110001N02Rik	NTF2-related export protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-4983409-3	chr6	4983307	4983507	+	795.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181595, intron 2 of 15)	intron (NM_181595, intron 2 of 15)	80087.0	NM_181595	243725.0	Mm.332901	NM_181595	ENSMUSG00000032827	Ppp1r9a	2810430P21Rik|4930518N04Rik|5330407E15|A230094E16Rik|BB181831|NRB|mKIAA1222|neurabin-I	protein phosphatase 1, regulatory (inhibitor) subunit 9A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-98027532-4	chr3	98027386	98027586	+	890.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010928, intron 1 of 33)	intron (NM_010928, intron 1 of 33)	13948.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-33492033-1	chr8	33491933	33492133	+	717.0	f1_c57bl6.idr	Intergenic	Intergenic	7722.0	NR_033589	628431.0	Mm.376526	NR_033589		Hmgb1-rs17	Hmg1-rs17	high mobility group box 1, related sequence 17	pseudo	3.11703639214944	3.26812410603836	2.05629337240592	3.29003641553172	1.30723039496804	1.50012002827198	1.13523692729887	1.09520339435262	-4.78750231090161	7.70173666228033e-05	0.00250195225110215
Merged-chr4-3810422-3	chr4	3810307	3810507	+	811.827759	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25248.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	1.00201582423111	0.608603537328716	1.10662974544309	0.77641737311014	1.46677956955106	0.611049607244556	1.45627446051664	0.590629257110125	1.001067427826	0.524671501152926	0.948340152465298
Merged-chr7-99981938-2	chr7	99981838	99982038	+	969.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1480.0	NM_175388	108937.0	Mm.323087	NM_175388	ENSMUSG00000058761	Rnf169	2900057K09Rik	ring finger protein 169	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133651670-4	chr4	133651594	133651794	+	973.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J-int|LTR|ERVL-MaLR	-18265.0	NM_001017968	503610.0	Mm.331948	NM_001017968	ENSMUSG00000037553	Zdhhc18	-	zinc finger, DHHC domain containing 18	protein-coding	3.49415978800756	4.46317180121904	3.72781417799512	4.00661819140593	5.58888849037409	5.29006414618586	4.46466004480956	5.37065682615484	1.59259250632771	7.08976693448128e-05	0.00234548778529154
Merged-chr11-115635781-2	chr11	115635681	115635881	+	666.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-7486.0	NM_001252395	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-72475205-4	chr8	72475107	72475307	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138585)	promoter-TSS (NM_138585)	26.0	NM_001359024	27967.0	Mm.30136	NM_138585	ENSMUSG00000052488	Cherp	5730408I11Rik|D8Wsu96e|DAN16|Scaf6	calcium homeostasis endoplasmic reticulum protein	protein-coding	-1.84362945061595	-1.81329140012928	-1.67810947190254	-1.83000206547234	-1.84149977556685	-1.81130325271815	-1.67603257143677	-1.82865309133977	0.037684011990387	0.991491645451152	1
Merged-chr11-79704538-4	chr11	79704428	79704628	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-7441.0	NR_029579	387188.0		NR_029579	ENSMUSG00000065395	Mir193a	Mir193|Mirn193|mir-193a|mmu-mir-193|mmu-mir-193a	microRNA 193a	ncRNA	5.52998575579494	5.31290014873738	4.71769126978549	5.48484586806809	4.83561965753178	4.8545457091967	4.24054722628449	5.29977154219485	-0.519508157342957	0.130824330756413	0.566336454410263
Merged-chr8-22476583-3	chr8	22476483	22476683	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011394)	promoter-TSS (NM_011394)	-117.0	NM_011394	20516.0	Mm.323901	NM_011394	ENSMUSG00000037656	Slc20a2	MolPit2|Pit-2|Pit2|Ram-1|Ram1	solute carrier family 20, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-110601041-2	chr13	110600941	110601141	+	718.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	205997.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-118491496-5	chr2	118491465	118491665	+	880.534973	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11869.0	NM_009273	20813.0	Mm.363404	NM_009273	ENSMUSG00000009549	Srp14	14kDa|AW536328	signal recognition particle 14	protein-coding	0.684676552129985	0.555873441338125	0.54608789526371	1.00240676173645	1.15057612665131	1.09765287125865	0.548254343318551	1.40861868147573	1.96257600844893	0.226154236505153	0.718844541572455
Merged-chr1-180407333-3	chr1	180407228	180407428	+	767.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081175, intron 2 of 7)	intron (NM_001081175, intron 2 of 7)	76176.0	NM_001081227	381310.0	Mm.44791	NM_001081227	ENSMUSG00000053963	Stum	6330403A02Rik|Gm10001|R75555	mechanosensory transduction mediator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-90125955-4	chr3	90125843	90126043	+	968.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029937, intron 7 of 39)	intron (NM_029937, intron 7 of 39)	21811.0	NM_029937	77595.0	Mm.159949	NM_029937	ENSMUSG00000027939	Nup210l	4930548O11Rik|R26-EGFP|Tg(Gt(ROSA)26Sor-EGFP)130910Eps	nucleoporin 210-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-11972057-4	chr15	11971947	11972147	+	993.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4985.0	NR_040447	73339.0	Mm.231975	NR_040447	ENSMUSG00000099349	1700047G03Rik	-	RIKEN cDNA 1700047G03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-52025674-2	chr16	52025574	52025774	+	646.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5875.0	NM_001033238	208650.0	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-108643051-2	chr12	108642951	108643151	+	771.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163396, intron 2 of 14)	intron (NM_001163396, intron 2 of 14)	7298.0	NM_001163396	14026.0	Mm.238841	NM_007965	ENSMUSG00000021262	Evl	AI528774|b2b2600Clo	Ena-vasodilator stimulated phosphoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-77537680-2	chr15	77537583	77537783	+	815.533325	f0_c57.idr|f1_c57bl6.idr	Intergenic	RLTR14-int|LTR|ERV1	-4368.0	NM_175391	108956.0	Mm.86391	NM_175391	ENSMUSG00000044309	Apol7c	2210421G13Rik	apolipoprotein L 7c	protein-coding	3.96772519525152	3.41295227213407	4.31368863775073	3.93490897768288	2.95948385511251	2.98359465445162	1.94673854970095	2.31252473360208	-2.11027849116048	0.000565087004536256	0.0123420762386396
Merged-chr14-25635028-2	chr14	25634928	25635128	+	626.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 6 of 23)	intron (NM_183208, intron 6 of 23)	31515.0	NM_001309430	100188919.0	Mm.473810	NM_001309430		Gm45915	Israa	predicted gene, 45915	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-114957181-4	chr9	114957084	114957284	+	852.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23197.0	NM_175380	333433.0	Mm.38198	NM_175380	ENSMUSG00000050627	Gpd1l	2210409H23Rik|D9Ertd660e	glycerol-3-phosphate dehydrogenase 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4908108-4	chr16	4908014	4908214	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357062, intron 2 of 17)	intron (NM_001357062, intron 2 of 17)	22014.0	NM_001357061	17237.0	Mm.291326	NM_029657	ENSMUSG00000022517	Mgrn1	2610042J20Rik|mKIAA0544|md|nc	mahogunin, ring finger 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-113514981-4	chr7	113514885	113515085	+	998.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360668, intron 1 of 12)	intron (NM_001360668, intron 1 of 12)	1151.0	NM_001360669	67420.0	Mm.206919	NM_026143	ENSMUSG00000030759	Far1	2600011M19Rik|2900034E22Rik|3732409C05Rik|AI850429|Mlstd2	fatty acyl CoA reductase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-121983613-2	chr9	121983513	121983713	+	563.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_153540, exon 2 of 2)	exon (NM_153540, exon 2 of 2)	12413.0	NM_001289559	215494.0	Mm.402151	NM_153540	ENSMUSG00000066235	Pomgnt2	Ago61|C85492|Gtdc2	protein O-linked mannose beta 1,4-N-acetylglucosaminyltransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-32276073-1	chr16	32275973	32276173	+	549.0	f0_balb.idr	Intergenic	Intergenic	-1388.0	NM_027355	70238.0	Mm.228263	NM_027355	ENSMUSG00000014074	Rnf168	3110001H15Rik	ring finger protein 168	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24894675-2	chr17	24894599	24894799	+	628.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023260)	promoter-TSS (NM_023260)	388.0	NM_001163102	193838.0	Mm.440199	NM_001163102	ENSMUSG00000073436	Eme2	2810013J18Rik	essential meiotic structure-specific endonuclease subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-14034113-2	chr13	14034013	14034213	+	803.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178337, intron 1 of 16)	intron (NM_178337, intron 1 of 16)	5525.0	NR_130788	70430.0	Mm.260209	NM_178337	ENSMUSG00000039233	Tbce	2610206D02Rik|C530005D02Rik|pmn	tubulin-specific chaperone E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107570087-2	chr9	107569987	107570187	+	905.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_010489, intron 1 of 3)	intron (NM_010489, intron 1 of 3)	924.0	NM_010489	15587.0	Mm.4834	NM_010489	ENSMUSG00000010047	Hyal2	AI256841|AU020858|AW555733	hyaluronoglucosaminidase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-59342062-2	chr19	59341972	59342172	+	566.0	f0_balb.idr|f0_c57.idr	intron (NM_001033222, intron 1 of 4)	intron (NM_001033222, intron 1 of 4)	3708.0	NM_001033222	107368.0	Mm.27250	NM_001033222	ENSMUSG00000074746	Pdzd8	A630041P07Rik|AV329468|AW228944|Pdzk8	PDZ domain containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127876878-4	chr7	127876721	127876921	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172749)	promoter-TSS (NM_172749)	15.0	NM_146259	244219.0	Mm.207872	NM_146259	ENSMUSG00000049728	Zfp668	BC030314|E130018B19Rik|Znf668	zinc finger protein 668	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91865215-4	chr16	91865078	91865278	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110275, intron 26 of 28)	intron (NM_001110275, intron 26 of 28)	66452.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83556492-4	chr11	83556401	83556601	+	891.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22135.0	NM_011338	20308.0	Mm.416125	NM_011338	ENSMUSG00000019122	Ccl9	CCF18|MRP-2|Scya10|Scya9	chemokine (C-C motif) ligand 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-103381365-2	chr15	103381265	103381465	+	596.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14574.0	NM_001314041	16402.0	Mm.16234	NM_010577	ENSMUSG00000000555	Itga5	Cd49e|Fnra|VLA5	integrin alpha 5 (fibronectin receptor alpha)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-117346715-4	chr2	117346621	117346821	+	828.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-3844.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-83441943-2	chr16	83441843	83442043	+	568.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus4|LINE|L1	-929200.0	NR_040567	75247.0	Mm.417813	NR_040567		4930553E22Rik	-	RIKEN cDNA 4930553E22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-30586067-2	chr14	30585967	30586167	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(GGA)n|Simple_repeat|Simple_repeat	13918.0	NR_037237	100526475.0		NR_037237	ENSMUSG00000093156	Mir3076	mir-3076|mmu-mir-3076	microRNA 3076	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-75062895-2	chr8	75062795	75062995	+	877.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001136259, intron 12 of 15)	intron (NM_001136259, intron 12 of 15)	29209.0	NM_011622	21968.0	Mm.1967	NM_011622	ENSMUSG00000042870	Tom1	-	target of myb1 trafficking protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27267393-2	chr2	27267293	27267493	+	677.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_133905, intron 28 of 29)	intron (NR_133905, intron 28 of 29)	-20090.0	NM_138665	192166.0	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81450813-2	chr10	81450713	81450913	+	650.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22318.0	NM_001311127	319586.0	Mm.152689	NM_176954	ENSMUSG00000034818	Celf5	4930565A21Rik|Brunol5	CUGBP, Elav-like family member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-77509241-3	chr8	77509150	77509350	+	774.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030113, intron 1 of 22)	intron (NM_030113, intron 1 of 22)	-7806.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-28475605-2	chr6	28475505	28475705	+	585.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4743.0	NM_019776	56463.0	Mm.439987	NM_019776	ENSMUSG00000001424	Snd1	AL033314|Tudor-SN	staphylococcal nuclease and tudor domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-30504406-2	chr18	30504306	30504506	+	828.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	231541.0	NR_151699	225326.0	Mm.194127	NM_181414	ENSMUSG00000033628	Pik3c3	5330434F23Rik|Vps34	phosphatidylinositol 3-kinase catalytic subunit type 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96661031-4	chr3	96660897	96661097	+	994.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302471, intron 27 of 29)	intron (NM_001302471, intron 27 of 29)	-9134.0	NM_001356539	213121.0	Mm.39732	NM_001081139	ENSMUSG00000038354	Ankrd35	4732436F15Rik	ankyrin repeat domain 35	protein-coding	4.60201138195537	4.77358682123664	4.62738931460992	2.73128610810557	4.32540941418126	4.5011008524294	5.31539604196021	3.59593634123821	0.238307134662382	0.646662080926621	0.984490176318369
Merged-chr7-75365690-1	chr7	75365590	75365790	+	671.5	f0_balb.idr	Intergenic	Intergenic	-56428.0	NM_153579	64176.0	Mm.273082	NM_153579	ENSMUSG00000053025	Sv2b	A830038F04Rik|AI850768|mKIAA0735	synaptic vesicle glycoprotein 2 b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101221822-4	chr15	101221729	101221929	+	869.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045326, exon 3 of 3)	non-coding (NR_045326, exon 3 of 3)	582.0	NR_045996	105968.0	Mm.120798	NR_045996	ENSMUSG00000115944	AU021063	-	expressed sequence AU021063	ncRNA	1.75750599282993	0.850246445693829	1.44501326505142	1.87172176081109	1.0016718529166	0.854825718275758	0.834138043076813	2.40374323611574	-0.0969711504695512	0.943850277425623	0.998431161219273
Merged-chr11-104315931-2	chr11	104315831	104316031	+	643.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285454, intron 6 of 9)	intron (NM_001285454, intron 6 of 9)	84495.0	NM_001285454	17762.0	Mm.1287	NM_010838	ENSMUSG00000018411	Mapt	AI413597|AW045860|Mtapt|Tau	microtubule-associated protein tau	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-59364727-2	chr14	59364627	59364827	+	541.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_199015, intron 1 of 10)	MLTR73|LTR|ERV1	763.0	NM_199015	219132.0	Mm.479285	NM_199015	ENSMUSG00000068245	Phf11d	D14Ertd668e|Phf11|Phf11l	PHD finger protein 11D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-27646061-4	chr3	27645953	27646153	+	811.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173182, intron 1 of 25)	intron (NM_173182, intron 1 of 25)	-61058.0	NR_037275	100526525.0		NR_037275	ENSMUSG00000092695	Mir3092	mir-3092|mmu-mir-3092	microRNA 3092	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-95578636-1	chr9	95578536	95578736	+	550.0	f0_balb.idr	Intergenic	Intergenic	18819.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31374539-4	chr14	31374449	31374649	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011894, exon 9 of 9)	3' UTR (NM_011894, exon 9 of 9)	37911.0	NM_009796	12339.0	Mm.201535	NM_009796	ENSMUSG00000021893	Capn7	AU022319|PalBH	calpain 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-109473272-4	chr11	109473153	109473353	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028710)	promoter-TSS (NM_028710)	-24.0	NM_134038	104681.0	Mm.265874	NM_134038	ENSMUSG00000041920	Slc16a6	AW743111|ESTM12|MCT 6|MCT 7|MCT6	solute carrier family 16 (monocarboxylic acid transporters), member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116855157-2	chr11	116855057	116855257	+	690.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178620, intron 2 of 12)	intron (NM_178620, intron 2 of 12)	1157.0	NM_001361586	69900.0	Mm.348004	NM_178620	ENSMUSG00000020818	Mfsd11	2600014M03Rik	major facilitator superfamily domain containing 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-51704782-3	chr12	51704667	51704867	+	607.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001329698, intron 1 of 5)	intron (NM_001329698, intron 1 of 5)	-12853.0	NM_052973	94186.0	Mm.65979	NM_052973	ENSMUSG00000020954	Strn3	Gs2na|SG2NA	striatin, calmodulin binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-86873656-3	chr8	86873594	86873794	+	843.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030563, intron 1 of 6)	intron (NM_030563, intron 1 of 6)	11564.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	1.29240382100249	1.69600194658135	1.52332979851363	1.58313880968998	1.30268560316223	0.91295288375262	1.26766320107351	1.07502089414544	-1.58034063560401	0.203063882649263	0.689405903799055
Merged-chr13-23689141-4	chr13	23689035	23689235	+	747.766663	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023422, intron 1 of 1)	intron (NM_023422, intron 1 of 1)	4936.0	NM_023422	68024.0	Mm.261676	NM_023422	ENSMUSG00000018102	Hist1h2bc	2610022J01Rik|H2bfs|R74621	histone cluster 1, H2bc	protein-coding	1.97036393897137	1.44443131166828	1.02138837387221	1.50582106711404	1.91586628936456	1.45418819265713	1.41026331207869	1.51323515259576	0.173380876081171	0.881706648658941	0.998431161219273
Merged-chr9-64253687-4	chr9	64253529	64253729	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008927)	promoter-TSS (NM_008927)	-24.0	NM_008927	26395.0	Mm.248907	NM_008927	ENSMUSG00000004936	Map2k1	MAPKK1|MEKK1|Mek1|Prkmk1	mitogen-activated protein kinase kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-53631442-2	chr10	53631342	53631542	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	-1003.0	NM_027830	71567.0	Mm.278221	NM_027830	ENSMUSG00000058298	Mcm9	9030408O17Rik|Gm235|Mcmdc1	minichromosome maintenance 9 homologous recombination repair factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-142608411-2	chr2	142608311	142608511	+	570.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20C2_MM|LTR|ERVK	293053.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-53421483-4	chr19	53421347	53421547	+	987.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30813.0	NM_172429	76479.0	Mm.313687	NM_172429	ENSMUSG00000025024	Smndc1	-	survival motor neuron domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-24972723-4	chr7	24972622	24972822	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010261)	promoter-TSS (NM_010261)	6.0	NM_010261	14470.0	Mm.22473	NM_010261	ENSMUSG00000003380	Rabac1	2310040I06Rik|Gbpap1|PRA1|prenylin	Rab acceptor 1 (prenylated)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-68589640-2	chr11	68589540	68589740	+	741.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177779, intron 3 of 6)	intron (NM_177779, intron 3 of 6)	2603.0	NM_177779	276920.0	Mm.123046	NM_177779	ENSMUSG00000045915	Ccdc42	A530001H01Rik	coiled-coil domain containing 42	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-37963606-4	chr19	37963492	37963692	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302140, intron 19 of 53)	intron (NM_001302140, intron 19 of 53)	79985.0	NM_001099634	226101.0	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding	6.58924243614548	6.46513509382015	6.97792172875082	6.53524671615504	6.43439925803723	6.95285645086966	7.63671206868531	6.99509930067027	0.434389053827795	0.0636389911613974	0.375949573458412
Merged-chr6-125581458-4	chr6	125581375	125581575	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011708, intron 6 of 51)	L1_Mur3|LINE|L1	28527.0	NM_011708	22371.0	Mm.22339	NM_011708	ENSMUSG00000001930	Vwf	6820430P06Rik|AI551257|B130011O06Rik|C630030D09|F8VWF|VWD	Von Willebrand factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-24208207-4	chr18	24208172	24208372	+	763.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361200, intron 1 of 12)	(TG)n|Simple_repeat|Simple_repeat	2278.0	NM_001160404	14423.0	Mm.30249	NM_013814	ENSMUSG00000000420	Galnt1	-	polypeptide N-acetylgalactosaminyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-11128266-2	chr16	11128166	11128366	+	718.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029582, intron 2 of 11)	intron (NM_029582, intron 2 of 11)	6266.0	NM_029582	106200.0	Mm.291015	NM_029582	ENSMUSG00000022498	Txndc11	2810408E11Rik|AI427833|EFP1|Txdc11	thioredoxin domain containing 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35704692-2	chr17	35704592	35704792	+	656.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007584)	promoter-TSS (NM_007584)	-93.0	NM_007584	12305.0	Mm.5021	NM_007584	ENSMUSG00000003534	Ddr1	6030432F18|AI323681|CD167a|Cak|Nep|PTK3A	discoidin domain receptor family, member 1	protein-coding	-0.156449633663705	-0.1417308674172	0.417785913400136	0.15146770981801	-0.155531713211392	-0.140642636201064	0.428829716320804	-0.149627168738406	-0.505952188911563	0.830332167989121	1
Merged-chr7-19230935-2	chr7	19230835	19231035	+	882.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_207525, intron 1 of 1)	intron (NM_207525, intron 1 of 1)	2546.0	NM_207525	403187.0	Mm.239583	NM_207525	ENSMUSG00000052214	Opa3	D630048P19Rik|Gm1425|Gm472	optic atrophy 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-45134219-2	chr13	45134119	45134319	+	795.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-132123.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-63073873-2	chr14	63073773	63073973	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR11B|LTR|ERVK	18800.0	NR_046019	72609.0	Mm.387101	NR_046019		2700070H01Rik	-	RIKEN cDNA 2700070H01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-33434753-2	chr5	33434653	33434853	+	644.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011320)	promoter-TSS (NM_011320)	-663.0	NM_011320	672284.0		NM_011320	ENSMUSG00000029112	Nkx1-1	Nkx-1.1|Sax2	NK1 homeobox 1	protein-coding	-0.240140315638205	0.469623345766311	-0.226971822797397	-0.231889166621858	-0.238905760853456	0.706807949987081	-0.225573181559779	-0.231027306028912	0.6371879854543	0.796273073510424	1
Merged-chr5-118514205-1	chr5	118514105	118514305	+	570.0	f0_balb.idr	Intergenic	Intergenic	-46514.0	NM_001347445	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94645516-4	chr10	94645485	94645685	+	972.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1VL4|LINE|L1	43028.0	NR_015524	67723.0	Mm.116284	NR_015524		Cep83os	4932415G12Rik|Ccdc41os1	centrosomal protein 83, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-66386241-4	chr8	66386170	66386370	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166375)	promoter-TSS (NM_001166375)	-31.0	NM_001166375	72925.0	Mm.380457	NM_175188	ENSMUSG00000036469	March1	2900024D24Rik|BB085186	membrane-associated ring finger (C3HC4) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-129874126-4	chr5	129874014	129874214	+	907.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_145487, intron 2 of 8)	intron (NR_145487, intron 2 of 8)	4974.0	NR_145486	18682.0	Mm.3159	NM_011079	ENSMUSG00000025537	Phkg1	Phkg	phosphorylase kinase gamma 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-3084081-4	chr17	3083997	3084197	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_003519)	promoter-TSS (NR_003519)	86.0	NR_003519	328734.0	Mm.335641	NR_003519		Pisd-ps2	D030013I16Rik	phosphatidylserine decarboxylase, pseudogene 2	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-94346400-2	chr11	94346300	94346500	+	620.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029600, intron 29 of 30)	intron (NM_029600, intron 29 of 30)	18399.0	NM_146024	71452.0	Mm.141054	NM_027799	ENSMUSG00000020864	Ankrd40	1110011C06Rik|5530600A18Rik|Gcap15	ankyrin repeat domain 40	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88446796-4	chr3	88446699	88446899	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013658, intron 10 of 14)	HAL1|LINE|L1	-5848.0	NR_105978	102465611.0		NR_105978	ENSMUSG00000098655	Mir7011	Gm27677|mmu-mir-7011	microRNA 7011	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-122375609-4	chr2	122375503	122375703	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6685.0	NM_001013829	435684.0	Mm.458215	NM_001013829	ENSMUSG00000033256	Shf	-	Src homology 2 domain containing F	protein-coding	2.64542459141617	2.78247582905215	2.48639095784311	1.66832740637978	2.31579852137624	2.70133528358429	2.38631745304867	2.18614920519215	-0.124996512772728	0.87903155426641	0.998431161219273
Merged-chr12-70713250-1	chr12	70713150	70713350	+	556.0	f1_balb.idr	Intergenic	Intergenic	-112264.0	NM_028127	319710.0	Mm.2962	NM_028127	ENSMUSG00000048285	Frmd6	2610019M19Rik|4930488L10Rik|AW212977|Willin	FERM domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-5785670-4	chr13	5785552	5785752	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR40a|LTR|ERVL	72440.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-39609362-2	chr15	39609262	39609462	+	868.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_053271, intron 21 of 26)	intron (NM_053271, intron 21 of 26)	-50149.0	NM_001256384	116838.0	Mm.309296	NM_053271	ENSMUSG00000037386	Rims2	2810036I15Rik|AW048769|RIM2|Rab3ip2|Rim2(+40A)|Rim2(+44A)|Rim2(+4A)|Serg2|Syt3-rs|mKIAA0751	regulating synaptic membrane exocytosis 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30783532-4	chr2	30783427	30783627	+	982.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	18210.0	NM_198000	73598.0	Mm.34166	NM_198000	ENSMUSG00000044320	1700001O22Rik	1700113K14Rik|4930549G18Rik	RIKEN cDNA 1700001O22 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-24593376-4	chr12	24593263	24593463	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145890, intron 6 of 13)	intron (NM_145890, intron 6 of 13)	12644.0	NM_145890	195733.0	Mm.263068	NM_145890	ENSMUSG00000020656	Grhl1	LBP-32|MGR|Tcfcp2l2	grainyhead like transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-69364197-4	chr12	69364106	69364306	+	965.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7030.0	NM_025441	66244.0	Mm.46705	NM_025441	ENSMUSG00000020982	Nemf	1500011I12Rik|4933405E14Rik|Sdccag1	nuclear export mediator factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-146209556-2	chr6	146209456	146209656	+	856.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_019923, intron 45 of 56)	intron (NM_019923, intron 45 of 56)	275434.0	NM_010656	16651.0	Mm.49689	NM_010656	ENSMUSG00000030255	Sspn	Krag	sarcospan	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-51076040-3	chr9	51075955	51076155	+	738.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033534, intron 2 of 7)	intron (NM_001033534, intron 2 of 7)	1039.0	NM_001033534	244864.0	Mm.335152	NM_001033534	ENSMUSG00000060594	Layn	E030012M19Rik|Gm511	layilin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-37421386-3	chr3	37421294	37421494	+	785.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021343, intron 1 of 15)	intron (NM_021343, intron 1 of 15)	1444.0	NM_021343	57815.0	Mm.172679	NM_021343	ENSMUSG00000027722	Spata5	2510048F20Rik|C78064|Spaf	spermatogenesis associated 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-77775120-1	chr18	77775020	77775220	+	575.0	f0_c57.idr	intron (NM_007505, intron 1 of 11)	intron (NM_007505, intron 1 of 11)	-1235.0	NM_001357531	225745.0	Mm.39293	NM_146089	ENSMUSG00000041840	Haus1	BC024400|Ccdc5|HEI-C	HAUS augmin-like complex, subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-140783115-4	chr2	140783026	140783226	+	862.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013802, intron 3 of 18)	MLT1H|LTR|ERVL-MaLR	-111650.0	NM_178382	71436.0	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-125340923-6	chr5	125340756	125340956	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001205082, exon 1 of 12)	exon (NM_001205082, exon 1 of 12)	238.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98345390-2	chr11	98345290	98345490	+	883.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3016.0	NM_144828	19049.0	Mm.45372	NM_144828	ENSMUSG00000061718	Ppp1r1b	AU040756|DARPP-32|Darpp32	protein phosphatase 1, regulatory (inhibitor) subunit 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-22826432-4	chr2	22826317	22826517	+	973.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019456, intron 4 of 13)	ORR1E|LTR|ERVL-MaLR	52090.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-33968478-4	chr8	33968400	33968600	+	948.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB4|LINE|L1	-38637.0	NM_001042675	19663.0	Mm.323997	NM_019733	ENSMUSG00000031586	Rbpms	2010300K22Rik|2700019M19Rik|AU017537|RBP-MS|hermes	RNA binding protein gene with multiple splicing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-32230779-4	chr12	32230678	32230878	+	996.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22129.0	NM_001146200	30955.0	Mm.101369	NM_020272	ENSMUSG00000020573	Pik3cg	5830428L06Rik|PI3Kgamma|p110gamma	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-146214916-1	chr2	146214816	146215016	+	606.0	f1_balb.idr	Intergenic	Intergenic	-7081.0	NM_016889	53626.0	Mm.379070	NM_016889	ENSMUSG00000068154	Insm1	IA-1	insulinoma-associated 1	protein-coding	2.58999973256413	3.04651578203678	3.58364042008661	2.16904845733423	2.90636898477837	2.52770064313568	4.15338493145361	1.75122004104599	0.32168538451072	0.686151613994355	0.996533206832645
Merged-chr10-96344152-2	chr10	96344052	96344252	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	117945.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-137409598-2	chr7	137409498	137409698	+	624.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029886, intron 1 of 3)	MLTR14|LTR|ERV1	1158.0	NM_029886	77252.0	Mm.29184	NM_029886	ENSMUSG00000040139	9430038I01Rik	-	RIKEN cDNA 9430038I01 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-166844201-2	chr1	166844101	166844301	+	778.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	155529.0	NR_037988	100503962.0	Mm.216842	NR_037988	ENSMUSG00000102548	Gm16701	-	predicted gene, 16701	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97288961-3	chr11	97288887	97289087	+	685.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4|SINE|ID	-8411.0	NM_008942	19155.0	Mm.29824	NM_008942	ENSMUSG00000001441	Npepps	AAP-S|MP100|Psa|R74825|goku	aminopeptidase puromycin sensitive	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-62495115-2	chr4	62495015	62495215	+	587.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_138653, intron 5 of 6)	intron (NM_138653, intron 5 of 6)	7085.0	NM_024257	72748.0	Mm.41506	NM_024257	ENSMUSG00000038422	Hdhd3	2810435D12Rik	haloacid dehalogenase-like hydrolase domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81388688-2	chr10	81388588	81388788	+	670.75	f1_balb.idr|f1_c57bl6.idr	TTS (NM_133964)	TTS (NM_133964)	2341.0	NR_105878	102466763.0		NR_105878	ENSMUSG00000098811	Mir6913	Gm27788|mmu-mir-6913	microRNA 6913	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5989241-4	chr19	5989147	5989347	+	988.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007600, exon 22 of 22)	3' UTR (NM_007600, exon 22 of 22)	-3104.0	NM_198650	381203.0	Mm.329638	NM_198650	ENSMUSG00000037451	Slc22a20	Gm963|OAT1-L|mOAT6	solute carrier family 22 (organic anion transporter), member 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-108737927-2	chr6	108737827	108738027	+	809.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-45132.0	NM_026011	67166.0	Mm.271178	NM_026011	ENSMUSG00000030105	Arl8b	2610313E07Rik|3100002J04Rik|Arl10c|gie1	ADP-ribosylation factor-like 8B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55784050-4	chr14	55783939	55784139	+	930.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361604)	promoter-TSS (NM_001361604)	33.0	NM_080435	104110.0	Mm.287010	NM_080435	ENSMUSG00000022220	Adcy4	mKIAA4004	adenylate cyclase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-105906609-4	chr1	105906504	105906704	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	83678.0	NR_151625	635504.0	Mm.359717	NR_151625		Gm7160	EG635504	predicted gene 7160	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-79931297-2	chr12	79931197	79931397	+	658.75	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_131074, exon 2 of 4)	non-coding (NR_131074, exon 2 of 4)	4967.0	NR_131074	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-143917806-4	chr2	143917694	143917894	+	870.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019771, intron 1 of 3)	intron (NM_019771, intron 1 of 3)	2463.0	NM_019771	56431.0	Mm.28919	NM_019771	ENSMUSG00000015932	Dstn	2610043P17Rik|ADF|AU042046|Dsn|corn1|sid23p	destrin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-124700593-4	chr4	124700497	124700697	+	957.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010213)	promoter-TSS (NM_010213)	-102.0	NM_010213	14201.0	Mm.331856	NM_010213	ENSMUSG00000032643	Fhl3	SLIM2	four and a half LIM domains 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-20537563-5	chr16	20537546	20537746	+	962.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_009679, exon 2 of 11)	5' UTR (NM_009679, exon 2 of 11)	2166.0	NM_009679	11773.0	Mm.18946	NM_009679	ENSMUSG00000022841	Ap2m1	-	adaptor-related protein complex 2, mu 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-3202477-4	chr11	3202365	3202565	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166547)	promoter-TSS (NM_001166547)	112.0	NM_001166548	74203.0	Mm.255649	NM_023743	ENSMUSG00000020454	Eif4enif1	2610509L04Rik|A930019J01Rik|AA410001|AU021239|Clast4|D11Ertd166e	eukaryotic translation initiation factor 4E nuclear import factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-123025650-2	chr7	123025550	123025750	+	784.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	55086.0	NM_175023	19647.0	Mm.4480	NM_011247	ENSMUSG00000030779	Rbbp6	4933422O15Rik|AI316869|BB233631|C030034J04Rik|C77662|P2P-R|PACT	retinoblastoma binding protein 6, ubiquitin ligase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-22923098-2	chr11	22922998	22923198	+	582.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361661, intron 2 of 2)	ORR1B2-int|LTR|ERVL-MaLR	-48907.0	NM_011663	22183.0	Mm.29542	NM_011663	ENSMUSG00000044068	Zrsr1	D11Ncvs75|Irlgs2|SP2|U2af1-rs1|U2afbp-rs	zinc finger (CCCH type), RNA binding motif and serine/arginine rich 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-53850507-2	chr1	53850407	53850607	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001883, intron 21 of 28)	intron (NM_001001883, intron 21 of 28)	1083.0	NR_106149	102465783.0		NR_106149	ENSMUSG00000098443	Mir7681	Gm27806|mmu-mir-7681	microRNA 7681	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-41358188-2	chr4	41358088	41358288	+	644.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355508, intron 1 of 6)	ID_B1|SINE|B4	6225.0	NM_001355508	67123.0	Mm.289795	NM_023305	ENSMUSG00000028437	Ubap1	2700092A01Rik|NAG20|UBAP-1|Ubap	ubiquitin-associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167769175-2	chr2	167769075	167769275	+	935.1666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	77998.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.620319417473331	0.21599424145712	0.207495759030636	1.24724558279932	0.191398756316889	0.217896544628511	0.209378652315563	0.918427923240653	-1.16963592565471	0.563326790768017	1
Merged-chr18-53463949-3	chr18	53463888	53464088	+	667.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033281)	promoter-TSS (NM_001033281)	-558.0	NM_001033281	225518.0	Mm.297645	NM_001033281	ENSMUSG00000069378	Prdm6	Gm92|PRISM	PR domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-43837664-2	chr5	43837564	43837764	+	812.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009763, intron 7 of 8)	intron (NM_009763, intron 7 of 8)	18771.0	NM_009763	12182.0	Mm.246332	NM_009763	ENSMUSG00000029082	Bst1	114/A10|A530073F09|BP-3|Bp3|Bsta1|CD157|Ly65	bone marrow stromal cell antigen 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-66813613-4	chr15	66813507	66813707	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009192, intron 1 of 8)	intron (NM_009192, intron 1 of 8)	18222.0	NM_001029841	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191326401-4	chr1	191326299	191326499	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025864, intron 1 of 7)	CpG	434.0	NM_025864	66950.0	Mm.236300	NM_025864	ENSMUSG00000026627	Tmem206	2310028N02Rik|AI118576	transmembrane protein 206	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-48708260-4	chr6	48708178	48708378	+	997.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153175)	promoter-TSS (NM_153175)	-34.0	NM_153175	231931.0	Mm.321047	NM_153175	ENSMUSG00000047867	Gimap6	4833419H03Rik|Ian6|mFLJ00102	GTPase, IMAP family member 6	protein-coding	5.08570368401908	5.37715074142139	4.38547748062623	3.90067847276052	4.41375037113944	3.54757615879934	3.72399491153596	4.17744668149644	-1.00096540044171	0.0279066263226377	0.225393839761767
Merged-chr14-26502883-4	chr14	26502831	26503031	+	795.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310445, intron 1 of 22)	L1_Mur2|LINE|L1	31693.0	NM_032008	83997.0	Mm.36769	NM_032008	ENSMUSG00000021870	Slmap	D330001L02Rik|Miranda|Slap|mKIAA1601	sarcolemma associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-113013729-2	chr12	113013629	113013829	+	998.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291444)	promoter-TSS (NM_001291444)	-779.0	NM_001291445	217893.0	Mm.35754	NM_198165	ENSMUSG00000021143	Pacs2	6720425G15Rik|AW208651|AW489976|E230011J22|Pacs1l|mKIAA0602	phosphofurin acidic cluster sorting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-83009190-4	chr15	83009092	83009292	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028728, intron 4 of 5)	intron (NM_028728, intron 4 of 5)	13946.0	NM_028728	74039.0	Mm.32584	NM_028728	ENSMUSG00000058099	Nfam1	4921501M20Rik|Cnaip	Nfat activating molecule with ITAM motif 1	protein-coding	1.44705700320271	1.16707509663142	0.967664558610608	1.22762450812192	1.17241057990528	1.56804368756224	0.778777129902537	0.950018718264793	-0.247466665515517	0.852948369290862	0.998431161219273
Merged-chr18-12936972-4	chr18	12936890	12937090	+	894.724976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207530, intron 1 of 27)	RMER6B|LTR|ERVK	4851.0	NM_207530	64291.0	Mm.259470	NM_020573	ENSMUSG00000044252	Osbpl1a	G430090F17Rik|Gm753|ORP-1|Osbpl1b	oxysterol binding protein-like 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-66807375-4	chr15	66807276	66807476	+	707.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029841, intron 1 of 7)	Tigger16a|DNA|TcMar-Tigger	24453.0	NM_001029841	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-63920746-3	chr11	63920670	63920870	+	911.388855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018805, intron 1 of 1)	CpG	1514.0	NM_018805	54710.0	Mm.274426	NM_018805	ENSMUSG00000070407	Hs3st3b1	3-OST-3B|3OST3B1|3Ost3b|AU041882|AW536289|Hs3st3b|m3-OST-3B	heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-54563761-1	chr1	54563661	54563861	+	874.3333130000001	f1_c57bl6.idr	Intergenic	B3|SINE|B2	-6077.0	NM_001163314	241062.0	Mm.103539	NM_175508	ENSMUSG00000073678	Pgap1	5033403E17Rik|9030223K07Rik|A530084K22|D230012E17Rik|oto	post-GPI attachment to proteins 1	protein-coding	0.932720307579166	1.09699142248424	0.928639401575104	0.454704841263818	0.445820863546017	0.470852898367046	0.648913075737204	1.01064307782722	-1.14495697280343	0.499801563185582	1
Merged-chr19-34382899-3	chr19	34382835	34383035	+	647.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	92200.0	NM_009890	12642.0	Mm.30824	NM_009890	ENSMUSG00000050370	Ch25h	AI462618|m25OH	cholesterol 25-hydroxylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-118805685-2	chr10	118805585	118805785	+	652.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	63218.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-99044356-2	chr14	99044256	99044456	+	783.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_175245, intron 1 of 2)	intron (NM_175245, intron 1 of 2)	1780.0	NM_175245	76789.0	Mm.38912	NM_175245	ENSMUSG00000033186	Mzt1	2410129H14Rik|AI120158|Mozart1	mitotic spindle organizing protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-108343240-3	chr11	108343064	108343264	+	830.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011101, intron 1 of 16)	CpG	724.0	NM_011101	18750.0	Mm.222178	NM_011101	ENSMUSG00000050965	Prkca	AI875142|Pkca	protein kinase C, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123018247-2	chr5	123018147	123018347	+	558.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175423, intron 1 of 1)	B1_Mur3|SINE|Alu	3173.0	NM_175423	109305.0	Mm.218582	NM_175423	ENSMUSG00000049686	Orai1	D730049H07Rik|Tmem142a|orai-1	ORAI calcium release-activated calcium modulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28394742-2	chr17	28394642	28394842	+	837.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C|LTR|ERVK	-29526.0	NM_021478	22157.0	Mm.42102	NM_021478	ENSMUSG00000037446	Tulp1	Tulp1l	tubby like protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6361136-2	chr19	6361036	6361236	+	752.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2554.0	NM_011750	22668.0	Mm.256422	NM_011750	ENSMUSG00000024949	Sf1	BBP|MZFM|WBP4|Zfp162	splicing factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88425216-4	chr3	88425102	88425302	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178696)	promoter-TSS (NM_178696)	-61.0	NM_001357749	229517.0	Mm.301740	NM_178696	ENSMUSG00000050144	Slc25a44	6720482A19|B430110G05Rik	solute carrier family 25, member 44	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180569337-2	chr1	180569237	180569437	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007415, intron 1 of 22)	CpG	446.0	NM_007415	11545.0	Mm.277779	NM_007415	ENSMUSG00000026496	Parp1	5830444G22Rik|AI893648|ARTD1|Adprp|Adprt1|C80510|PARP|PPOL|msPARP|parp-1|sPARP-1	poly (ADP-ribose) polymerase family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-51688722-4	chr11	51688615	51688815	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025319)	promoter-TSS (NM_025319)	-81.0	NM_025319	66050.0	Mm.35693	NM_025319	ENSMUSG00000007777	0610009B22Rik	-	RIKEN cDNA 0610009B22 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-95236560-4	chr10	95236485	95236685	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001330138, intron 2 of 2)	intron (NM_001330138, intron 2 of 2)	87124.0	NM_001330138	12905.0	Mm.473739	NM_009950	ENSMUSG00000045867	Cradd	RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28905729-2	chr17	28905629	28905829	+	741.833313	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045457, exon 2 of 3)	non-coding (NR_045457, exon 2 of 3)	464.0	NR_045457	74179.0	Mm.248931	NR_045457	ENSMUSG00000085333	1700030A11Rik	-	RIKEN cDNA 1700030A11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-88799484-4	chr10	88799392	88799592	+	906.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175158, intron 19 of 61)	MTD|LTR|ERVL-MaLR	27322.0	NM_175158	70683.0	Mm.29631	NM_175158	ENSMUSG00000004356	Utp20	3830408P06Rik|AA617408|Drim|mDRIM|mDRIN	UTP20 small subunit processome component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-30030437-4	chr19	30030329	30030529	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144873)	promoter-TSS (NM_144873)	-84.0	NM_144873	109113.0	Mm.313364	NM_144873	ENSMUSG00000024817	Uhrf2	2310065A22Rik|AI426270|AW214556|D130071B19Rik|Nirf	ubiquitin-like, containing PHD and RING finger domains 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-9846577-2	chr4	9846477	9846677	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013526, intron 1 of 1)	intron (NM_013526, intron 1 of 1)	2205.0	NM_013526	242316.0	Mm.302555	NM_013526	ENSMUSG00000051279	Gdf6	BMP-13|BMP13|GDF16	growth differentiation factor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-173000089-4	chr2	172999994	173000194	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175112)	promoter-TSS (NM_175112)	-23.0	NM_175112	66679.0	Mm.4113	NM_175112	ENSMUSG00000027509	Rae1	3230401I12Rik|D2Ertd342e|MNRP|MNRP41	ribonucleic acid export 1	protein-coding	6.20624328733342	6.01846728653772	6.49690342388364	5.57276677439949	5.83081477046827	5.65872484489247	6.30186237265219	5.49205207263592	-0.284869909240902	0.293186826555075	0.797649214211793
Merged-chr7-16746338-2	chr7	16746238	16746438	+	788.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198613, intron 2 of 4)	ID4|SINE|ID	7894.0	NM_198613	232910.0	Mm.333597	NM_198613	ENSMUSG00000008036	Ap2s1	AI043088	adaptor-related protein complex 2, sigma 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-46281457-2	chr18	46281357	46281557	+	586.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172627)	promoter-TSS (NM_172627)	-607.0	NM_172627	225467.0	Mm.262096	NM_172627	ENSMUSG00000024477	Pggt1b	2010207C17Rik|2610100E13|AI451237|AI551093|BGG1|GGT1	protein geranylgeranyltransferase type I, beta subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-43239803-5	chr9	43239710	43239910	+	887.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178644)	promoter-TSS (NM_178644)	6.0	NM_178644	102644.0	Mm.246479	NM_178644	ENSMUSG00000032014	Oaf	AL024221|D130038B21Rik|D9Ucla1	out at first homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-83528303-2	chr17	83528203	83528403	+	999.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER3|DNA|hAT-Charlie	-13970.0	NM_001159529	20463.0	Mm.30072	NM_009187	ENSMUSG00000024248	Cox7a2l	COX7AR|COX7RP|EB1|SIG-81|SIG81|Silg81	cytochrome c oxidase subunit VIIa polypeptide 2-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-181237124-4	chr2	181237023	181237223	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183162, intron 6 of 18)	AT_rich|Low_complexity|Low_complexity	4904.0	NM_183162	229003.0	Mm.315872	NM_183162	ENSMUSG00000027580	Helz2	PDIP1|Pric285|mKIAA1769|mPDIP1	helicase with zinc finger 2, transcriptional coactivator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131672570-4	chr1	131672483	131672683	+	985.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007799, intron 9 of 9)	intron (NM_007799, intron 9 of 9)	-16112.0	NM_001311096	226421.0	Mm.44508	NM_145509	ENSMUSG00000052688	Rab7b	5430435G22Rik	RAB7B, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-135149237-1	chr6	135149137	135149337	+	548.0	f1_c57bl6.idr	intron (NM_013546, intron 3 of 3)	RMER1B|Other|Other	18978.0	NM_013546	15199.0	Mm.378937	NM_013546	ENSMUSG00000042770	Hebp1	Hebp|p22HBP	heme binding protein 1	protein-coding	-2.18292257394068	-2.15545247547656	-2.03304972317742	-2.17058342868585	-2.18099422382073	-2.1536522739386	-2.16187909550322	-2.16936197735154	-0.683654500252594	0.846597994014493	1
Merged-chr16-30532219-4	chr16	30532109	30532309	+	905.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357415, intron 9 of 11)	intron (NM_001357415, intron 9 of 11)	18369.0	NM_172614	224090.0	Mm.241459	NM_172614	ENSMUSG00000022537	Tmem44	1700007N03Rik|9330161C17Rik|B230220N21	transmembrane protein 44	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-122357234-3	chr1	122357144	122357344	+	815.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	152099.0	NR_151524	102638832.0	Mm.112794	NR_151524	ENSMUSG00000099960	Gm28590	-	predicted gene 28590	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-49002444-2	chr7	49002344	49002544	+	677.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111016, intron 2 of 38)	intron (NM_001111016, intron 2 of 38)	43371.0	NM_001111016	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-53323485-2	chr19	53323385	53323585	+	663.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360348, intron 1 of 5)	intron (NM_001360348, intron 1 of 5)	-5928.0	NM_010847	17859.0	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-67258514-4	chr18	67258415	67258615	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-12685.0	NM_001357518	225651.0	Mm.235792	NM_172630	ENSMUSG00000062526	Mppe1	Pgap5	metallophosphoesterase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-8565759-1	chr11	8565659	8565859	+	615.0	f1_balb.idr	intron (NM_001083587, intron 4 of 30)	B4|SINE|B4	98776.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0.216375959688873	0.369162984778847	-0.234006632431163	-0.237346888044145	0.0222373129654142	-0.228688760383177	-0.23305063207821	-0.236763791033838	-2.07318320105528	0.397941548040892	1
Merged-chr9-94696856-4	chr9	94696761	94696961	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177909, intron 2 of 15)	intron (NM_177909, intron 2 of 15)	26969.0	NM_177909	331004.0	Mm.326125	NM_177909	ENSMUSG00000031129	Slc9a9	5730527A11Rik|9930105B05|AI854429|Nhe9	solute carrier family 9 (sodium/hydrogen exchanger), member 9	protein-coding	6.88523089725538	7.06927081184339	6.90738950154052	6.63310918290155	7.12800317621327	7.08350085570075	7.0985679577029	6.84654918017717	0.173677975507294	0.317432878288531	0.820861935376414
Merged-chr12-74013941-3	chr12	74013850	74014050	+	772.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172804, intron 1 of 6)	intron (NM_172804, intron 1 of 6)	16189.0	NM_172804	238266.0	Mm.311393	NM_172804	ENSMUSG00000044912	Syt16	6430703N11|Strep14|Syt14l|syt14r	synaptotagmin XVI	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-136310992-1	chr3	136310892	136311092	+	777.0	f1_c57bl6.idr	intron (NM_001033350, intron 1 of 16)	intron (NM_001033350, intron 1 of 16)	15074.0	NM_001310749	242248.0	Mm.30832	NM_001033350	ENSMUSG00000037922	Bank1	A530094C12Rik|AI451642|AVIEF|BANK	B cell scaffold protein with ankyrin repeats 1	protein-coding	0.0526630306312387	0.862839370682284	0.0678271000365148	0.401453229765789	0.0540834016797621	0.876116044370203	0.0694395596529305	0.0631537384748314	-0.378342102421375	0.859715986498998	1
Merged-chr9-21237257-4	chr9	21237150	21237350	+	977.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_016679, exon 1 of 5)	exon (NM_016679, exon 1 of 5)	2082.0	NM_016679	50868.0	Mm.248266	NM_016679	ENSMUSG00000003308	Keap1	INRF2|mKIAA0132	kelch-like ECH-associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-27474704-4	chr7	27474610	27474810	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133210, intron 1 of 1)	intron (NM_133210, intron 1 of 1)	870.0	NM_133210	170742.0	Mm.200120	NM_133210	ENSMUSG00000055200	Sertad3	AW124805|D1Mgi51|Rbt1|Sei3	SERTA domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125510759-1	chr6	125510659	125510859	+	631.0	f1_c57bl6.idr	Intergenic	Intergenic	-15999.0	NM_007657	12527.0	Mm.210676	NM_007657	ENSMUSG00000030342	Cd9	Tspan29	CD9 antigen	protein-coding	2.0239729123145	1.01834787929025	1.4602388991006	1.52605739768953	0.731897170462352	0.781659613164308	1.47394826256208	0.752118195811051	-2.28802788362533	0.1128874465501	0.526330408176724
Merged-chr3-33496049-2	chr3	33495949	33496149	+	565.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28|LTR|ERVL	-304134.0	NM_027619	67120.0	Mm.275710	NM_025978	ENSMUSG00000027677	Ttc14	2700016E08Rik|4930434D01Rik|4931403I22Rik|4933402I15Rik|AI662468|AU014779|AW561908|cI-44|mKIAA1980	tetratricopeptide repeat domain 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-74524373-4	chr11	74524268	74524468	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001015046, intron 2 of 24)	intron (NM_001015046, intron 2 of 24)	65790.0	NM_001015046	380711.0	Mm.425690	NM_001015046	ENSMUSG00000038807	Rap1gap2	AU067654|Garnl4|Gm1561|mKIAA1039	RAP1 GTPase activating protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-130222956-2	chr5	130222867	130223067	+	814.0	f0_balb.idr|f0_c57.idr	intron (NM_027854, intron 1 of 6)	B3A|SINE|B2	632.0	NM_027854	71667.0	Mm.258508	NM_027854	ENSMUSG00000053094	Tmem248	0610007L01Rik|A930023A16Rik|AW557951|G430067H08Rik	transmembrane protein 248	protein-coding	-1.53362919331644	-1.50201671710775	-1.51157659084044	-1.08120497225282	-1.53141005593807	-1.49994505258991	-1.50941244497383	-1.51802371459528	-1.94474658522739	0.577200604274218	1
Merged-chr11-115161168-3	chr11	115161097	115161297	+	936.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001163753, exon 9 of 9)	3' UTR (NM_001163753, exon 9 of 9)	-2144.0	NM_012030	26941.0	Mm.27842	NM_012030	ENSMUSG00000020733	Slc9a3r1	EBP-50|NHE-RF|NHERF-1|NHERF1	solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 1	protein-coding	-1.27462982598064	-1.24684119600598	-1.2572181089565	-0.8402905472071	-1.27418953994324	-1.24459247568128	-1.09159278932446	-1.2642162392515	-1.22395137564734	0.71640787363208	1
Merged-chr4-94603955-1	chr4	94603855	94604055	+	675.0	f1_c57bl6.idr	promoter-TSS (NM_172695)	promoter-TSS (NM_172695)	-708.0	NM_172695	18786.0	Mm.490101	NM_172695	ENSMUSG00000028577	Plaa	2410007N06|AI536418|AU018445|AW208417|D4Ertd618e|PLA2P|PLAP|Ufd3	phospholipase A2, activating protein	protein-coding	0.343810112091153	-0.254831941445436	-0.258886818949766	-0.262004384268936	-0.127955175154436	0.090484098092835	-0.0861781537781671	-0.261460435879683	-0.188117269448834	0.935088479351653	1
Merged-chr8-13106122-1	chr8	13106022	13106222	+	1000.0	f0_balb.idr	promoter-TSS (NM_178708)	promoter-TSS (NM_178708)	401.0	NM_146207	99375.0	Mm.212861	NM_146207	ENSMUSG00000031446	Cul4a	2810470J21Rik|AW495282	cullin 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-168570155-3	chr2	168570065	168570265	+	879.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291173, intron 1 of 8)	intron (NM_001291173, intron 1 of 8)	20200.0	NM_001291178	18019.0	Mm.116802	NM_010899	ENSMUSG00000027544	Nfatc2	AI607462|NF-ATc2|NF-ATp|NFAT1|NFAT1-D|Nfatp	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-24710824-3	chr12	24710660	24710860	+	855.888916	f0_balb.idr|f0_c57.idr|f1_balb.idr	intron (NM_009104, intron 5 of 9)	B3|SINE|B2	2506.0	NM_009104	20135.0	Mm.99	NM_009104	ENSMUSG00000020649	Rrm2	AA407299|R2	ribonucleotide reductase M2	protein-coding	2.80802332203414	4.27221361951186	4.25034382986595	3.68511924479485	4.33480057876389	4.36149619678951	4.81359592160602	3.53904127472942	0.635948452983795	0.210195467990919	0.69949048545273
Merged-chr4-130264980-3	chr4	130264876	130265076	+	711.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356465, intron 2 of 9)	intron (NM_001356465, intron 2 of 9)	6458.0	NM_001356465	230779.0	Mm.45132	NM_172702	ENSMUSG00000023232	Serinc2	2310004K20Rik|AW121759|FKSG84|TDE2|Tde2l	serine incorporator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-54983285-4	chr18	54983189	54983389	+	867.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175751, intron 2 of 9)	intron (NM_175751, intron 2 of 9)	6891.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-39381330-2	chr1	39381230	39381430	+	611.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001357522, exon 12 of 19)	exon (NM_001357522, exon 12 of 19)	13479.0	NM_001252218	114641.0	Mm.379302	NM_053257	ENSMUSG00000073702	Rpl31	Dts	ribosomal protein L31	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-113870556-4	chr13	113870452	113870652	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172595, intron 1 of 4)	intron (NM_172595, intron 1 of 4)	76044.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21361297-2	chr9	21361197	21361397	+	908.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6574.0	NM_001042708	16201.0	Mm.440026	NM_010561	ENSMUSG00000032178	Ilf3	MBII-26|MPHOSPH4|NF90|NFAR	interleukin enhancer binding factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-52066461-1	chr3	52066361	52066561	+	681.0	f0_balb.idr	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	38545.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69517926-2	chr11	69517826	69518026	+	576.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081330, intron 8 of 85)	intron (NM_001081330, intron 8 of 85)	31182.0	NM_001081330	327954.0	Mm.247478	NM_177617	ENSMUSG00000005237	Dnah2	2900022L05Rik|4930564A01|D130094J20|D330014H01Rik|Dnahc2|Dnhd3	dynein, axonemal, heavy chain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4_JH584295_random-1859-1	chr4_JH584295_random	1759	1959	+	780.333313	f0_c57.idr		GC_rich|Low_complexity|Low_complexity											0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-49016373-4	chr17	49016280	49016480	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027452, intron 1 of 2)	intron (NM_027452, intron 1 of 2)	83798.0	NM_027452	70530.0	Mm.133607	NM_027452	ENSMUSG00000040490	Lrfn2	5730420O05Rik|SALM1|mKIAA1246	leucine rich repeat and fibronectin type III domain containing 2	protein-coding	0.936939299547263	0.886911423435894	0.37441867485405	0.368537329391877	0.948891894799693	0.896884164149521	0.376096359303607	0.369566239671028	0.040740651830711	0.982462279669983	1
Merged-chr3-105043922-4	chr3	105043760	105043960	+	699.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030249, intron 1 of 5)	intron (NM_030249, intron 1 of 5)	9093.0	NM_001163332	80281.0	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-114141666-2	chr10	114141566	114141766	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVB7_2-LTR_MM|LTR|ERVK	659704.0	NM_146241	237553.0	Mm.445550	NM_146241	ENSMUSG00000050663	Trhde	9330155P21Rik	TRH-degrading enzyme	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167662601-3	chr2	167662467	167662667	+	912.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1023.0	NM_145538	407243.0	Mm.4863	NM_145538	ENSMUSG00000090213	Tmem189	AI840826|Kua	transmembrane protein 189	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-71274417-4	chr2	71274340	71274540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172436, exon 18 of 18)	3' UTR (NM_172436, exon 18 of 18)	62494.0	NM_010064	13427.0	Mm.249479	NM_010064	ENSMUSG00000027012	Dync1i2	3110079H08Rik|AW554389|Dncic2	dynein cytoplasmic 1 intermediate chain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-62169528-4	chr18	62169440	62169640	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10441.0	NM_007420	11555.0	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-147363228-3	chr5	147363138	147363338	+	925.361084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010229, intron 9 of 23)	intron (NM_010229, intron 9 of 23)	37251.0	NM_010229	14255.0	Mm.194	NM_010229	ENSMUSG00000042817	Flt3	B230315G04|CD135|Flk-2|Flk2|Flt-3|Ly72|wmfl	FMS-like tyrosine kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69847343-2	chr11	69847243	69847443	+	677.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_023564, exon 3 of 8)	exon (NM_023564, exon 3 of 8)	699.0	NR_033133	70310.0	Mm.28874	NM_023564	ENSMUSG00000019461	Plscr3	2210403O21Rik|2610037N06Rik|ESTM3|X83310	phospholipid scramblase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-110642621-3	chr11	110642498	110642698	+	691.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	163258.0	NM_001356346	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-121861488-3	chr8	121861394	121861594	+	917.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31925.0	NM_145605	234825.0	Mm.209329	NM_145605	ENSMUSG00000040263	Klhdc4	AA408426|AV352552|BC012312|G430025P05Rik	kelch domain containing 4	protein-coding	3.08167536412669	3.86020958822269	3.68031714316345	2.66818314579693	3.24821241964427	2.57738996750257	2.89516892877395	1.53568426323634	-1.16439455497773	0.111944203390661	0.523751271664787
Merged-chr7-63813139-2	chr7	63813039	63813239	+	635.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-103718.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101240939-4	chr15	101240859	101241059	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15773.0	NR_045328	380977.0	Mm.399924	NR_045326	ENSMUSG00000097915	A330009N23Rik	-	RIKEN cDNA A330009N23 gene	ncRNA	4.35923878667321	3.55448349697674	4.23192893305717	3.42644937369679	4.27537243291167	3.5812667046592	4.14942524730488	4.08628658021126	0.124260306594147	0.792961992660846	0.998431161219273
Merged-chr11-116441237-2	chr11	116441137	116441337	+	623.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001033267)	TTS (NM_001033267)	7024.0	NR_003376	664849.0	Mm.258466	NR_003376		Gm7367	EG664849	1110014K08Rik pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-114596817-4	chr5	114596670	114596870	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004180, intron 2 of 2)	intron (NM_001004180, intron 2 of 2)	28519.0	NM_001004180	433940.0	Mm.194212	NM_001004180	ENSMUSG00000041930	Fam222a	-	family with sequence similarity 222, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-86970516-2	chr17	86970416	86970616	+	959.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_145491, intron 2 of 4)	intron (NM_145491, intron 2 of 4)	7405.0	NM_145491	104215.0	Mm.826	NM_145491	ENSMUSG00000024143	Rhoq	Arhq|TC10A|Tc10	ras homolog family member Q	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-87743475-4	chr6	87743356	87743556	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159697, intron 2 of 7)	intron (NM_001159697, intron 2 of 7)	12587.0	NM_001159697	58229.0	Mm.333229	NM_021418	ENSMUSG00000068263	Efcc1	Ccdc48	EF hand and coiled-coil domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-59763390-7	chr1	59763261	59763461	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007561)	promoter-TSS (NM_007561)	-918.0	NM_007561	12168.0	Mm.7106	NM_007561	ENSMUSG00000067336	Bmpr2	2610024H22Rik|AL117858|AW546137|BB189135|BMP-2|BMPR-2|BMPR-II|BMPRII|BRK-3|Gm20272	bone morphogenetic protein receptor, type II (serine/threonine kinase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-7438480-3	chr19	7438384	7438584	+	739.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053076, intron 1 of 6)	intron (NM_053076, intron 1 of 6)	15911.0	NR_105957	102466781.0		NR_105957	ENSMUSG00000098293	Mir6991	Gm27966|mmu-mir-6991	microRNA 6991	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-5832793-4	chr18	5832719	5832919	+	774.674988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	240172.0	NM_001360981	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	3.77382669356934	3.85400706040673	4.58737398852065	4.29542474891171	4.29850336218228	4.11190706757213	3.8339744445629	3.55384382795201	-0.253977465622871	0.577785006037677	0.96585843058813
Merged-chr11-74532557-3	chr11	74532457	74532657	+	902.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001015046, intron 2 of 24)	intron (NM_001015046, intron 2 of 24)	57601.0	NM_001015046	380711.0	Mm.425690	NM_001015046	ENSMUSG00000038807	Rap1gap2	AU067654|Garnl4|Gm1561|mKIAA1039	RAP1 GTPase activating protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-111870585-3	chr13	111870467	111870667	+	864.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_130345, intron 2 of 2)	intron (NR_130345, intron 2 of 2)	2631.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	0.646831272032626	1.63065388257839	0.496267650059506	1.22232817704179	1.04611958962504	0.741927102478346	0.498797818797293	0.488908836128516	-1.69502940417155	0.29782000916472	0.800257675359925
Merged-chr4-115640777-4	chr4	115640688	115640888	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007823, intron 3 of 11)	intron (NM_007823, intron 3 of 11)	6917.0	NM_007823	13120.0	Mm.1840	NM_007823	ENSMUSG00000028713	Cyp4b1	-	cytochrome P450, family 4, subfamily b, polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-14379688-2	chr9	14379588	14379788	+	664.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028013, intron 1 of 1)	intron (NM_028013, intron 1 of 1)	1554.0	NM_028013	71946.0	Mm.41423	NM_028013	ENSMUSG00000037419	Endod1	2210414F18Rik|2310067E08Rik|C85344	endonuclease domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70798776-4	chr14	70798679	70798879	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	24398.0	NM_010071	13449.0	Mm.243323	NM_010071	ENSMUSG00000022102	Dok2	DokR|Frip|dok-R	docking protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89899738-2	chr3	89899638	89899838	+	635.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010559, intron 1 of 9)	Lx7|LINE|L1	13458.0	NM_001310676	16194.0	Mm.2856	NM_010559	ENSMUSG00000027947	Il6ra	CD126|IL-6R|IL-6R-alpha|IL-6RA|Il6r	interleukin 6 receptor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-76695114-4	chr16	76695006	76695206	+	897.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	83986.0	NR_155453	102632814.0		NR_155453	ENSMUSG00000109333	Gm30790	Gm45028	predicted gene, 30790	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-174042717-4	chr1	174042607	174042807	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_146717, exon 1 of 1)	exon (NM_146717, exon 1 of 1)	774.0	NM_146717	258712.0	Mm.223146	NM_146717	ENSMUSG00000045381	Olfr433	MOR123-1	olfactory receptor 433	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-89461317-2	chr9	89461217	89461417	+	690.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	161669.0	NM_153509	209743.0	Mm.242899	NM_153509	ENSMUSG00000039313	AF529169	DD1|Kiaa1024	cDNA sequence AF529169	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-155812384-4	chr4	155812280	155812480	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207678)	promoter-TSS (NM_207678)	-109.0	NM_207678	56036.0	Mm.23492	NM_018856	ENSMUSG00000029068	Ccnl2	1700010A01Rik|1810019L15Rik|2010319M22Rik|AA409936|AW261738|Ania-6b|HCLA-150|Pcee|SB138	cyclin L2	protein-coding	5.47109473143596	5.9476557410861	6.2967600007055	5.84667262993245	5.91740728489589	6.14269988153657	6.04115400513665	5.89160388901653	0.0929082025684441	0.70700096339006	0.998431161219273
Merged-chr16-89765668-2	chr16	89765568	89765768	+	684.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52684.0	NM_001145887	21844.0	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-43475992-2	chr6	43475892	43476092	+	575.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_013861, intron 6 of 8)	MLT1A0|LTR|ERVL-MaLR	33563.0	NR_045988	319812.0	Mm.446393	NR_045988		9430018G01Rik	-	RIKEN cDNA 9430018G01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-103175219-4	chr11	103175109	103175309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019679, intron 1 of 26)	intron (NM_019679, intron 1 of 26)	4071.0	NM_019679	57778.0	Mm.138913	NM_019679	ENSMUSG00000055805	Fmnl1	8030453N10Rik|AI553564|Fmnl|Fnrl|Frls	formin-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-78883287-2	chr8	78883187	78883387	+	685.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62135.0	NM_030145	78651.0	Mm.28694	NM_030145	ENSMUSG00000031683	Lsm6	1500031N17Rik|2410088K19Rik|AI747288	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-40845642-4	chr4	40845558	40845758	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022305, intron 1 of 5)	intron (NM_022305, intron 1 of 5)	4480.0	NR_039584	100628614.0		NR_039584	ENSMUSG00000096377	Mir5123	mmu-mir-5123|mu-mir-5123	microRNA 5123	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-117305309-2	chr5	117305236	117305436	+	623.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-13930.0	NM_001033311	231668.0	Mm.298603	NM_001033311	ENSMUSG00000066894	Vsig10	-	V-set and immunoglobulin domain containing 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-130079402-4	chr5	130079279	130079479	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001130476)	promoter-TSS (NM_001130476)	9.0	NM_001130476	22021.0	Mm.332720	NM_013837	ENSMUSG00000034118	Tpst1	R75054|Tango13a	protein-tyrosine sulfotransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-120826547-2	chr7	120826447	120826647	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16284.0	NM_007908	13631.0	Mm.25997	NM_007908	ENSMUSG00000035064	Eef2k	C86191|eEF-2K	eukaryotic elongation factor-2 kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70549908-3	chr8	70549807	70550007	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007924, intron 1 of 11)	intron (NM_007924, intron 1 of 11)	10232.0	NM_007924	13716.0	Mm.271973	NM_007924	ENSMUSG00000070002	Ell	Ell1|Men	elongation factor RNA polymerase II	protein-coding	2.30538888700631	3.089444386359	1.60283964928219	2.99747673862267	4.05873834203265	3.62824371535879	3.50521446418213	4.71874856676459	2.25162620323767	0.000487699259823964	0.0109304154160048
Merged-chr17-35255672-3	chr17	35255579	35255779	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	4390.0	NR_106169	102465886.0		NR_106169	ENSMUSG00000098269	Mir8094	Gm27513|mmu-mir-8094	microRNA 8094	ncRNA	2.05632243654016	1.46301084992005	2.69632833439024	2.16656033105302	2.88144780977976	2.59309967275187	2.97432253182623	2.31036508987561	1.1657566161189	0.165137070230532	0.629921969677594
Merged-chr12-85523300-4	chr12	85523191	85523391	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49401.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-121201979-2	chr5	121201879	121202079	+	905.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2522.0	NM_011290	19988.0	Mm.262021	NM_011290	ENSMUSG00000029614	Rpl6	Taxreb107	ribosomal protein L6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-137817865-1	chr4	137817765	137817965	+	1000.0	f1_c57bl6.idr	Intergenic	Intergenic	-21481.0	NM_007431	11647.0	Mm.288186	NM_007431	ENSMUSG00000028766	Alpl	ALP|APTNAP|Akp-2|Akp2|TNAP|TNSALP	alkaline phosphatase, liver/bone/kidney	protein-coding	2.05173681133997	1.53554105289521	1.03472230648228	2.33729580984377	2.15153836963483	1.0646319530078	2.26298238248839	1.01861204876199	-0.187271600338742	0.881165653323718	0.998431161219273
Merged-chr1-135688990-2	chr1	135688890	135689090	+	852.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31073.0	NM_001360782	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-90415207-3	chr5	90415129	90415329	+	820.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45641.0	NM_009654	11657.0	Mm.16773	NM_009654	ENSMUSG00000029368	Alb	Alb-1|Alb1|BCL002	albumin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118612393-4	chr9	118612336	118612536	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 1 of 27)	intron (NM_133721, intron 1 of 27)	5727.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67647370-4	chr10	67647239	67647439	+	893.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-75380.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171688603-2	chr1	171688503	171688703	+	919.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_007649, intron 1 of 3)	MER20|DNA|hAT-Charlie	6611.0	NM_001360767	12506.0	Mm.1738	NM_007649	ENSMUSG00000015355	Cd48	AI449234|AW610730|BCM1|BLAST|BLAST-1|BLAST1|Bcm-1|MEM-102|SLAMF2|Sgp-60	CD48 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-146438236-3	chr6	146438157	146438357	+	952.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019923, intron 2 of 56)	intron (NM_019923, intron 2 of 56)	63966.0	NM_010586	16439.0	Mm.7800	NM_010586	ENSMUSG00000030287	Itpr2	AI649341|InsP3R-2|InsP3R-5|Ip3r2|Itpr5|insP3R2	inositol 1,4,5-triphosphate receptor 2	protein-coding	1.78250968959193	2.55577036412681	1.71209118727374	1.78141089526393	1.44876357824653	1.24780832752896	0.961938193260467	0.942285784375994	-2.85926674824417	0.0197110861435614	0.177888968963831
Merged-chr11-70595123-2	chr11	70595023	70595223	+	641.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016713, intron 1 of 30)	intron (NM_016713, intron 1 of 30)	-20771.0	NM_001145537	668433.0	Mm.425687	NM_001145537	ENSMUSG00000087279	4930544D05Rik	-	RIKEN cDNA 4930544D05 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-137096278-2	chr5	137096178	137096378	+	631.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19929.0	NM_201373	384309.0	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	0.47710368083939	0.0106053760276663	0.00482848966319366	0.000362612692890979	0.386792564816319	0.0119058747804343	0.796120110825933	0.00114337055875519	1.43744606439455	0.519029677741096	1
Merged-chr13-41469725-4	chr13	41469624	41469824	+	981.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111324, intron 1 of 7)	intron (NM_001111324, intron 1 of 7)	17636.0	NM_001111324	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-84818207-4	chr11	84818112	84818312	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145433, intron 2 of 4)	intron (NM_145433, intron 2 of 4)	1303.0	NM_145433	217038.0	Mm.280825	NM_145433	ENSMUSG00000018405	Mrm1	A530065E19Rik	mitochondrial rRNA methyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46337764-2	chr19	46337664	46337864	+	639.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164291, intron 1 of 8)	intron (NM_001164291, intron 1 of 8)	896.0	NM_001164294	67116.0	Mm.218848	NM_024192	ENSMUSG00000036748	Cuedc2	3010002G01Rik	CUE domain containing 2	protein-coding	-1.8418762459921	-1.8125357239735	-1.82140854000656	-1.82869693527674	-1.56059678980999	-1.8106129477253	-1.81939992894326	-1.82739231600805	1.3620893379502	0.699511506488145	1
Merged-chr10-17788681-4	chr10	17788597	17788797	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	HAL1|LINE|L1	-7522.0	NM_138628	378431.0	Mm.283493	NM_138628	ENSMUSG00000039891	Txlnb	2310001N14Rik|Mdp77	taxilin beta	protein-coding	5.36469380035981	5.15902575854693	5.83061438400642	5.31645346657346	6.01594663885962	5.19339520006545	5.91116915198075	5.53115110487069	0.301116092202674	0.298919720598707	0.800409222377854
Merged-chr13-119790046-3	chr13	119789957	119790157	+	663.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302550, intron 2 of 6)	intron (NM_001302550, intron 2 of 6)	401.0	NM_001302547	72465.0	Mm.139115	NM_028245	ENSMUSG00000094870	Zfp131	2610109I01Rik|AW558871|Znf131	zinc finger protein 131	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-59853131-3	chr5	59853024	59853224	+	905.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13C2|LTR|ERVK	132878.0	NR_040683	71057.0	Mm.50817	NR_040682	ENSMUSG00000106013	4933402J10Rik	-	RIKEN cDNA 4933402J10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124321764-4	chr6	124321678	124321878	+	653.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170395, intron 11 of 16)	RLTR19-int|LTR|ERVK	17127.0	NM_053094	93671.0	Mm.37426	NM_053094	ENSMUSG00000008845	Cd163	CD163v2|CD163v3	CD163 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-108085925-4	chr3	108085830	108086030	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346665)	promoter-TSS (NM_001346665)	-46.0	NM_001358018	791415.0	Mm.374791	NM_001358018	ENSMUSG00000056411	Gm12500	-	predicted gene 12500	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118040881-4	chr9	118040782	118040982	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001048146, exon 1 of 7)	5' UTR (NM_001048146, exon 1 of 7)	360.0	NM_013727	27215.0	Mm.92705	NM_013727	ENSMUSG00000039285	Azi2	AA410145|AZ2	5-azacytidine induced gene 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-59483669-7	chr1	59483484	59483684	+	901.7023929999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008057, exon 1 of 1)	exon (NM_008057, exon 1 of 1)	1437.0	NM_008057	14369.0	Mm.297906	NM_008057	ENSMUSG00000041075	Fzd7	Fz7	frizzled class receptor 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-81014126-7	chr8	81014055	81014255	+	910.785706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027554, exon 1 of 10)	exon (NM_027554, exon 1 of 10)	751.0	NM_027554	74841.0	Mm.246018	NM_027554	ENSMUSG00000038250	Usp38	4631402N15Rik|4833420O05Rik|AA536967|AU044701|AW544820|mKIAA1891	ubiquitin specific peptidase 38	protein-coding	-1.8418762459921	-1.8125357239735	-1.82140854000656	-1.82869693527674	-1.56059678980999	-1.8106129477253	-1.81939992894326	-1.82739231600805	1.3620893379502	0.699511506488145	1
Merged-chr2-117249775-4	chr2	117249658	117249858	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026620)	promoter-TSS (NM_026620)	19.0	NM_026620	68215.0	Mm.219389	NM_026620	ENSMUSG00000027349	Fam98b	2610510H03Rik	family with sequence similarity 98, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-93444649-3	chr3	93444605	93444805	+	925.0888669999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001163098, exon 2 of 2)	exon (NM_001163098, exon 2 of 2)	2375.0	NM_001163098	99681.0	Mm.316671	NM_001163098	ENSMUSG00000052415	Tchh	AHF|AI597080|Thh	trichohyalin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-19043179-2	chr10	19043079	19043279	+	847.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-27769.0	NM_009397	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-72270160-1	chr5	72270060	72270260	+	1000.0	f0_balb.idr	intron (NR_003966, intron 15 of 22)	intron (NR_003966, intron 15 of 22)	66817.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-91732439-2	chr12	91732339	91732539	+	704.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 3 of 6)	B3|SINE|B2	53997.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3282692-4	chr12	3282591	3282791	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016676, intron 1 of 5)	Charlie1a|DNA|hAT-Charlie	27278.0	NM_016676	19325.0	Mm.378993	NM_016676	ENSMUSG00000020671	Rab10	AW107754	RAB10, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-110558529-3	chr13	110558412	110558612	+	654.083313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	163468.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	2.30635402765349	3.18950278523284	2.27505859750852	2.86260986906547	1.4693257272278	1.3526595325936	2.29378648374714	2.08393268024317	-1.93524342955662	0.0333016612864093	0.255717157208529
Merged-chr7-4238594-2	chr7	4238486	4238686	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081239, exon 4 of 6)	exon (NM_001081239, exon 4 of 6)	832.0	NM_001081239	232801.0	Mm.258061	NM_001081239	ENSMUSG00000070873	Lilra5	E030017K20|EG232801|Gm4878|Lilrc1	leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 5	protein-coding	-0.739389263312382	0.1703906244233	-0.73065901105037	-0.733927057932836	-0.738573766733155	-0.725502116642748	-0.525923982226319	-0.733354941732331	-2.52582027249485	0.369793244886402	1
Merged-chr10-88741613-4	chr10	88741532	88741732	+	932.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025859, intron 4 of 5)	C-rich|Low_complexity|Low_complexity	10218.0	NM_025859	104303.0	Mm.291247	NM_025859	ENSMUSG00000060904	Arl1	2310008D22Rik|AU019749	ADP-ribosylation factor-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99107029-4	chr7	99106911	99107111	+	982.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 3 of 14)	intron (NM_178635, intron 3 of 14)	34133.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-156040053-2	chr1	156039842	156040042	+	780.0	f0_c57.idr|f1_balb.idr	promoter-TSS (NM_001358627)	promoter-TSS (NM_001358627)	-898.0	NM_001358626	240832.0	Mm.253335	NM_022329	ENSMUSG00000050565	Tor1aip2	1110020D10Rik|15kDa|A130072J07|AA103493|AW060462|AW610675|C77739|Ifrg15|Lull1	torsin A interacting protein 2	protein-coding	-0.247064888755243	-0.230106612100643	-0.235630686966611	-0.239913465667101	0.67456754170929	-0.228865502631022	-0.234409729707779	0.341228390969465	3.96057473947142	0.105813440204573	1
Merged-chr12-102374251-2	chr12	102374151	102374351	+	582.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177620, intron 7 of 9)	MLT1C|LTR|ERVL-MaLR	65562.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96812602-4	chr3	96812531	96812731	+	974.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163497, intron 1 of 3)	MIRb|SINE|MIR	1890.0	NM_018767	54215.0	Mm.34693	NM_018767	ENSMUSG00000038304	Cd160	AU045688|By55	CD160 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-73815553-4	chr18	73815436	73815636	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145494)	promoter-TSS (NM_145494)	-144.0	NM_145494	107029.0	Mm.36817	NM_145494	ENSMUSG00000024556	Me2	AW120568|D030040L20Rik|NAD-ME	malic enzyme 2, NAD(+)-dependent, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32625270-2	chr2	32625170	32625370	+	758.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001198791)	promoter-TSS (NM_001198791)	-167.0	NM_001198791	11636.0	Mm.29189	NM_021515	ENSMUSG00000026817	Ak1	Ak-1|B430205N08Rik	adenylate kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-72945405-3	chr17	72945319	72945519	+	717.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	27114.0	NM_029999	77889.0	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-61131492-4	chr18	61131387	61131587	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001037859)	TTS (NM_001037859)	14019.0	NR_105949	102466212.0		NR_105949	ENSMUSG00000098389	Mir6983	Gm27496|mmu-mir-6983	microRNA 6983	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-33088452-2	chr2	33088352	33088552	+	603.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355201, intron 2 of 29)	MLT1J2|LTR|ERVL-MaLR	-1199.0	NM_178888	99326.0	Mm.41290	NM_178888	ENSMUSG00000038860	Garnl3	AW120551	GTPase activating RANGAP domain-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-139039344-2	chr3	139039244	139039444	+	693.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356388, intron 2 of 13)	MTD|LTR|ERVL-MaLR	35857.0	NM_145544	229877.0	Mm.28893	NM_145544	ENSMUSG00000028149	Rap1gds1	BC011279|GDS1	RAP1, GTP-GDP dissociation stimulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-6441852-3	chr15	6441828	6442028	+	756.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	-3405.0	NM_013485	12279.0	Mm.29095	NM_013485	ENSMUSG00000022149	C9	-	complement component 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-60739387-2	chr13	60739291	60739491	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 18 of 26)	intron (NM_134062, intron 18 of 26)	46973.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	-1.107570214359	-1.08653447535648	-1.09741130683982	-0.688779236681923	-0.841983873845991	-1.08417742060026	-1.09494903060535	-1.10420625070982	-0.619773806471497	0.851573714113283	1
Merged-chr18-64987010-4	chr18	64986879	64987079	+	976.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114386, intron 1 of 30)	intron (NM_001114386, intron 1 of 30)	-36548.0	NM_031881	83814.0	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	3.02040759998877	2.2328398020156	3.09547480158633	2.81323057926702	2.88180710272378	3.3151961565414	3.11915009540377	3.4088433320398	0.631806405583319	0.326938704210602	0.829199211128231
Merged-chr9-96376062-4	chr9	96375948	96376148	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11617.0	NM_001357212	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	5.31382057688704	5.17545453885179	4.24884767906417	5.35447149966339	4.84248942046452	4.66906235730511	3.9914555606941	5.29755531662593	-0.371283300936525	0.336519653477337	0.836858394864118
Merged-chr10-61658006-2	chr10	61657906	61658106	+	792.099976	f1_balb.idr|f1_c57bl6.idr	intron (NM_026438, intron 2 of 10)	ID_B1|SINE|B4	9385.0	NM_026438	67895.0	Mm.28897	NM_026438	ENSMUSG00000020089	Ppa1	2010317E03Rik|Pyp	pyrophosphatase (inorganic) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-105927213-3	chr3	105927116	105927316	+	670.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001033780, exon 4 of 6)	exon (NM_001033780, exon 4 of 6)	5448.0	NM_001033780	433638.0	Mm.239081	NM_001033780	ENSMUSG00000074342	I830077J02Rik	-	RIKEN cDNA I830077J02 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-102331738-4	chr15	102331632	102331832	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021713)	promoter-TSS (NM_021713)	23.0	NM_021713	60315.0	Mm.251638	NM_021713	ENSMUSG00000001285	Myg1	0610023A07Rik|2810433J21Rik|5830429P19Rik|AI325965|Gamm1	melanocyte proliferating gene 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-94909930-2	chr8	94909830	94910030	+	822.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033533, intron 3 of 8)	intron (NM_001033533, intron 3 of 8)	8168.0	NM_001033533	234582.0	Mm.277871	NM_001033533	ENSMUSG00000063605	Ccdc102a	BC027663|Gm586	coiled-coil domain containing 102A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-20939710-1	chr11	20939610	20939810	+	1000.0	f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-108602.0	NM_173752	216551.0	Mm.76694	NM_173752	ENSMUSG00000042363	Lgalsl	1110067D22Rik|A530071M23|Grpa|Hspc159|Lgalsla	lectin, galactoside binding-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-101061198-2	chr9	101061098	101061298	+	744.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13564.0	NM_001100451	77853.0	Mm.326206	NM_001100451	ENSMUSG00000066415	Msl2	E130103E02Rik|Msl2l1|Rnf184	MSL complex subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107666884-2	chr9	107666784	107666984	+	574.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199218, intron 1 of 15)	intron (NM_001199218, intron 1 of 15)	515.0	NM_023805	76257.0	Mm.296560	NM_023805	ENSMUSG00000010064	Slc38a3	0610012J02Rik|D9Ucla2|Nat1|Slc38-3|Sn1|Snat3|mNAT	solute carrier family 38, member 3	protein-coding	-1.11301502176196	-1.08843027643983	-1.10065540268584	-0.337074946373353	-1.11242900008663	-1.08578104058399	-1.09788790207088	-1.10867028474752	-2.94135471364006	0.382729701075202	1
Merged-chr6-82125403-1	chr6	82125303	82125503	+	542.0	f0_balb.idr	Intergenic	Intergenic	83775.0	NM_145570	232146.0	Mm.489683	NM_145570	ENSMUSG00000035104	Eva1a	BC014699|Fam176a|Tmem166	eva-1 homolog A (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106784280-2	chr11	106784180	106784380	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355676, intron 10 of 13)	intron (NM_001355676, intron 10 of 13)	-1521.0	NR_037224	100526469.0		NR_037224	ENSMUSG00000093273	Mir3064	mir-3064|mmu-mir-3064	microRNA 3064	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-83593073-3	chr9	83592970	83593170	+	910.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172507, intron 2 of 3)	intron (NM_172507, intron 2 of 3)	44732.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	-0.859082918983678	-0.988263333422384	-1.00040322824838	-1.00311683473178	-1.00626376281094	-0.985632567570811	-0.997655022158689	-0.350334081862082	2.02436496650785	0.517018710074872	1
Merged-chr3-59206161-3	chr3	59206050	59206250	+	752.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177855, intron 15 of 43)	intron (NM_177855, intron 15 of 43)	4732.0	NM_028808	74191.0	Mm.90067	NM_028808	ENSMUSG00000036362	P2ry13	2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174	purinergic receptor P2Y, G-protein coupled 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32364037-2	chr2	32363937	32364137	+	722.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252536, intron 3 of 18)	intron (NM_001252536, intron 3 of 18)	839.0	NM_028412	68379.0	Mm.170508	NM_028412	ENSMUSG00000039205	Ciz1	0610038H21Rik|2900056O04Rik|LSFR1|ZNF356	CDKN1A interacting zinc finger protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-12469747-3	chr13	12469639	12469839	+	853.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8001.0	NM_001291057	56048.0	Mm.474138	NM_018886	ENSMUSG00000057554	Lgals8	1200015E08Rik|AI326142|D13Ertd524e|Lgals-8	lectin, galactose binding, soluble 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-152318880-6	chr4	152318687	152318887	+	805.847229	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033489)	promoter-TSS (NM_001033489)	-162.0	NM_001033489	433809.0	Mm.156205	NM_001033489	ENSMUSG00000058498	Rnf207	D330010C22Rik|Gm143	ring finger protein 207	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-32061321-4	chr12	32061233	32061433	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011158)	promoter-TSS (NM_011158)	-54.0	NM_011158	19088.0	Mm.25594	NM_011158	ENSMUSG00000002997	Prkar2b	AI451071|AW061005|PKARIIbeta|Pkarb2|RII(beta)	protein kinase, cAMP dependent regulatory, type II beta	protein-coding	2.68854396739359	3.01669946452102	1.38386109243027	1.97928065911523	2.78055695232099	2.55596143886587	2.20895055153269	1.98940389728508	-0.00565141002830925	0.995006317538055	0.998431161219273
Merged-chr4-35228731-2	chr4	35228631	35228831	+	781.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2851.0	NM_001081343	73205.0	Mm.331544	NM_001081343	ENSMUSG00000028300	3110043O21Rik	AI840585|C9orf72	RIKEN cDNA 3110043O21 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-68376425-2	chr10	68376325	68376525	+	589.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C|LTR|ERVK	-55283.0	NR_045357	75148.0	Mm.23505	NR_045357	ENSMUSG00000112157	4930545H06Rik	-	RIKEN cDNA 4930545H06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-10466087-4	chr3	10466000	10466200	+	880.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25970.0	NM_001127191	74718.0	Mm.440548	NM_029068	ENSMUSG00000027534	Snx16	4930522N22Rik|AI117577|AI747675	sorting nexin 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-52948570-2	chr2	52948470	52948670	+	836.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	B3|SINE|B2	90702.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-61025556-4	chr9	61025455	61025655	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8486.0	NR_040767	330956.0	Mm.207985	NR_040767	ENSMUSG00000111290	Gm5122	A430102L10	predicted gene 5122	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-98935625-2	chr15	98935525	98935725	+	796.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-1235.0	NM_011654	22143.0	Mm.392113	NM_011654	ENSMUSG00000023004	Tuba1b	Tuba2	tubulin, alpha 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-132308032-3	chr7	132307935	132308135	+	839.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029935, intron 1 of 7)	MER34A1|LTR|ERV1	-7629.0	NR_028578	100043682.0	Mm.482794	NR_028578	ENSMUSG00000109270	Gm10584	-	predicted gene 10584	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-40464069-4	chr12	40463981	40464181	+	854.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	18028.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80855585-2	chr7	80855485	80855685	+	576.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6523.0	NM_009553	22691.0	Mm.358645	NM_009553	ENSMUSG00000038797	Zscan2	Zfp-29|Zfp29	zinc finger and SCAN domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-47502712-2	chr19	47502612	47502812	+	706.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_175360, intron 9 of 9)	intron (NM_175360, intron 9 of 9)	-10270.0	NR_045322	100503104.0	Mm.442735	NR_045322	ENSMUSG00000097990	Gm19557	-	predicted gene, 19557	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-9082497-3	chr3	9082389	9082589	+	806.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20525.0	NR_040597	75149.0	Mm.399324	NR_040597	ENSMUSG00000103116	4930539M17Rik	-	RIKEN cDNA 4930539M17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-60269816-4	chr10	60269732	60269932	+	886.616699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7796.0	NM_001146123	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-57331436-4	chr2	57331348	57331548	+	822.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010274, intron 6 of 16)	RSINE1|SINE|B4	93066.0	NM_010274	14571.0	Mm.3711	NM_010274	ENSMUSG00000026827	Gpd2	AA408484|AI448216|AU021455|AW494132|GPDH|Gdm1|Gpd-m|Gpdh-m|TISP38	glycerol phosphate dehydrogenase 2, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124090517-2	chr5	124090417	124090617	+	631.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019875, intron 1 of 11)	PB1D7|SINE|Alu	5281.0	NM_019875	56325.0	Mm.254839	NM_019875	ENSMUSG00000029408	Abcb9	TAPL|mKIAA1520	ATP-binding cassette, sub-family B (MDR/TAP), member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-136431488-3	chr4	136431385	136431585	+	889.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285484, intron 1 of 1)	intron (NM_001285484, intron 1 of 1)	6873.0	NM_001285484	15552.0	Mm.40573	NM_008309	ENSMUSG00000070687	Htr1d	5-HT-1D|5-HT1D|AI853647|Gpcr14|Htr1db	5-hydroxytryptamine (serotonin) receptor 1D	protein-coding	2.50293860264136	2.28148592977973	1.46023413587596	1.1457905035981	3.2221687751261	3.02076044446897	1.1860423931746	1.83542672369225	1.24596629009641	0.241400421365232	0.737728541910355
Merged-chr12-12278643-6	chr12	12278569	12278769	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029758, intron 2 of 12)	intron (NM_029758, intron 2 of 12)	16530.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-115134924-2	chr6	115134824	115135024	+	736.8000490000001	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013681)	promoter-TSS (NM_013681)	22.0	NM_001111015	20965.0	Mm.441431	NM_013681	ENSMUSG00000009394	Syn2	2900074L19Rik|AI836018|AI841723	synapsin II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-67965593-4	chr11	67965461	67965661	+	775.229187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361351)	promoter-TSS (NM_001361351)	81.0	NM_027963	71860.0	Mm.441823	NM_027963	ENSMUSG00000020904	Cfap52	1700019F09Rik|4933417B11Rik|WDRPUH|Wdr16	cilia and flagella associated protein 52	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-156614882-2	chr1	156614782	156614982	+	620.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001136104, intron 1 of 12)	B2_Mm2|SINE|B2	56095.0	NM_001136104	11352.0	Mm.329515	NM_009595	ENSMUSG00000026596	Abl2	AA536808|Abll|Arg	v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-38129305-2	chr16	38129205	38129405	+	657.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347232, intron 1 of 11)	MTC|LTR|ERVL-MaLR	-40045.0	NR_033221	414072.0	Mm.483602	NR_033221		BC031361	-	cDNA sequence BC031361	ncRNA	-1.84371485578039	-1.81332821174849	-1.82251738371298	-1.83006564316449	-1.84158176955426	-1.81133687985023	-1.5312619047181	-1.82871450833159	1.60090129203521	0.64914985597185	1
Merged-chr2-131353606-4	chr2	131353508	131353708	+	623.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178607)	promoter-TSS (NM_178607)	-716.0	NM_178607	51902.0	Mm.477523	NM_178607	ENSMUSG00000048911	Rnf24	2810473M14Rik|4930505A13Rik|AI317164|C86507|D2Ertd504e	ring finger protein 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-29467390-2	chr19	29467290	29467490	+	689.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021396, intron 5 of 5)	MLTR18C_MM|LTR|ERVK	54597.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-144470173-2	chr7	144470073	144470273	+	852.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357116, intron 1 of 15)	intron (NM_001357116, intron 1 of 15)	762.0	NM_007803	13043.0	Mm.205601	NM_007803	ENSMUSG00000031078	Cttn	1110020L01Rik|Ems1	cortactin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-38311463-2	chr18	38311363	38311563	+	654.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361268, intron 8 of 10)	B3A|SINE|B2	14658.0	NM_001164621	56736.0	Mm.228903	NM_020012	ENSMUSG00000060450	Rnf14	2310075C09Rik|2610005D23Rik|AA986456|AU041447|D18Ertd188e|D7Bwg0165e|Triad2	ring finger protein 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-70970356-4	chr17	70970269	70970469	+	825.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	20147.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	2.84825239554075	4.00652812926851	3.62517930518665	3.52500772829296	2.37218352829353	3.34753808018856	2.21708655144641	4.09473870593058	-0.483028603705279	0.473304022180699	0.926125823511231
Merged-chr6-58831028-1	chr6	58830928	58831128	+	762.0	f0_balb.idr	promoter-TSS (NM_001361967)	promoter-TSS (NM_001361967)	-437.0	NM_001361967	73998.0	Mm.191892	NM_028705	ENSMUSG00000029804	Herc3	5730409F18Rik|AI646603|mKIAA0032	hect domain and RLD 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140568467-4	chr5	140568366	140568566	+	948.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3399.0	NM_030022	77998.0	Mm.160040	NM_030022	ENSMUSG00000036586	Grifin	E130101O17Rik	galectin-related inter-fiber protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-112653373-4	chr12	112653260	112653460	+	945.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001165894)	TTS (NM_001165894)	5991.0	NR_105904	102465566.0		NR_105904	ENSMUSG00000098380	Mir6939	Gm27498|mmu-mir-6939	microRNA 6939	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-39100842-3	chr18	39100722	39100922	+	717.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361073, intron 3 of 21)	intron (NM_001361073, intron 3 of 21)	107677.0	NM_175164	71302.0	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128370100-2	chr10	128370000	128370200	+	587.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081040)	promoter-TSS (NM_001081040)	-63.0	NM_001081040	210582.0	Mm.296876	NM_001081040	ENSMUSG00000039914	Coq10a	Gm1	coenzyme Q10A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-99379136-2	chr5	99379036	99379236	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 2 of 3)	intron (NR_030692, intron 2 of 3)	-126209.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-74957818-2	chr15	74957722	74957922	+	574.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001164036, exon 2 of 4)	exon (NM_001164036, exon 2 of 4)	2716.0	NM_001164040	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-13671370-4	chr9	13671259	13671459	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173776, intron 1 of 3)	intron (NM_173776, intron 1 of 3)	8899.0	NM_173776	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-53592645-2	chr5	53592545	53592745	+	709.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359152, intron 1 of 9)	intron (NM_001359152, intron 1 of 9)	2159.0	NM_001080927	19664.0	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-172314284-4	chr1	172314197	172314397	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080419, intron 1 of 6)	intron (NM_080419, intron 1 of 6)	1930.0	NM_080419	140559.0	Mm.271717	NM_080419	ENSMUSG00000038034	Igsf8	ESTM34|EWI-2|KCT-4|PGRL	immunoglobulin superfamily, member 8	protein-coding	6.3080181397926	6.75268631116188	6.47846172783023	6.73323178269572	6.64888442214896	6.6078434576352	6.67579518093549	6.65122414051438	0.0765209369867604	0.688702751415051	0.996533206832645
Merged-chr10-41475458-2	chr10	41475358	41475558	+	981.625	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164433)	promoter-TSS (NM_001164433)	-856.0	NM_001164433	171580.0	Mm.290431	NM_138315	ENSMUSG00000019823	Mical1	MICAL|MICAL-1|Nical	microtubule associated monooxygenase, calponin and LIM domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-27337669-2	chr7	27337569	27337769	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175641)	promoter-TSS (NM_175641)	-57.0	NM_175641	108075.0	Mm.272251	NM_175641	ENSMUSG00000040488	Ltbp4	2310046A13Rik	latent transforming growth factor beta binding protein 4	protein-coding	0.622546806760037	0.023103025116407	0.0180997341591005	0.171378799568367	0.14845744664309	0.505252702512145	0.0192021404818595	0.174199613099536	-0.125374603003651	0.950093157030338	1
Merged-chr17-34649393-4	chr17	34649285	34649485	+	994.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017406, intron 5 of 17)	intron (NM_017406, intron 5 of 17)	2239.0	NM_017406	12915.0	Mm.4068	NM_017406	ENSMUSG00000015461	Atf6b	AA617266|ATF6beta|Creb-rp|Crebl1	activating transcription factor 6 beta	protein-coding	2.95382228340115	3.44299943641395	3.88166912041767	4.24543485784439	3.41545939772995	3.82473248939474	2.71169643450643	4.26510429194714	-0.0627944794434878	0.913663884567451	0.998431161219273
Merged-chr7-141403531-4	chr7	141403436	141403636	+	729.633301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011528)	TTS (NM_011528)	10589.0	NM_172116	213350.0	Mm.290953	NM_172116	ENSMUSG00000051007	Gatd1	BC023835|D230016J19Rik|Pddc1	glutamine amidotransferase like class 1 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-87731897-2	chr6	87731797	87731997	+	932.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159697, intron 1 of 7)	intron (NM_001159697, intron 1 of 7)	1028.0	NM_001159697	58229.0	Mm.333229	NM_021418	ENSMUSG00000068263	Efcc1	Ccdc48	EF hand and coiled-coil domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-44052722-3	chr14	44052617	44052817	+	724.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46299.0	NM_001011876	630952.0		NM_001011876	ENSMUSG00000072598	Ang6	EG630952	angiogenin, ribonuclease A family, member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-62600121-2	chr10	62600021	62600221	+	682.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_019553, intron 1 of 14)	intron (NM_019553, intron 1 of 14)	2177.0	NM_019553	56200.0	Mm.413275	NM_019553	ENSMUSG00000020075	Ddx21	AI255159|AL022742|D10Ertd645e|D10Wsu42e	DEAD (Asp-Glu-Ala-Asp) box polypeptide 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-34034965-4	chr11	34034860	34035060	+	999.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155520, intron 4 of 4)	MIRc|SINE|MIR	-11968.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-146729461-2	chr5	146729361	146729561	+	581.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	65495.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	-2.18375600819439	-2.15556918946382	-2.16409311609999	-2.17109492323169	-2.18177734563694	-2.01960173909294	-2.16216348594872	-2.16984160310277	0.759018020146679	0.829933115115583	1
Merged-chr6-120474410-2	chr6	120474310	120474510	+	571.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_008359, exon 5 of 13)	exon (NM_008359, exon 5 of 13)	11213.0	NM_008359	16172.0	Mm.4481	NM_008359	ENSMUSG00000002897	Il17ra	AW538159|Cdw217|Il17r|VDw217	interleukin 17 receptor A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-116483485-3	chr3	116483392	116483592	+	819.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24683.0	NM_025517	66368.0	Mm.251228	NM_025517	ENSMUSG00000000339	Rtca	2310009A18Rik|AI450277|RPC|Rtcd1	RNA 3'-terminal phosphate cyclase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-143962354-3	chr2	143962247	143962447	+	646.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024281, intron 10 of 23)	intron (NM_024281, intron 10 of 23)	47016.0	NM_019771	56431.0	Mm.28919	NM_019771	ENSMUSG00000015932	Dstn	2610043P17Rik|ADF|AU042046|Dsn|corn1|sid23p	destrin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85257944-2	chr12	85257844	85258044	+	686.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_175337, intron 5 of 11)	B3|SINE|B2	-11959.0	NR_105903	102466769.0		NR_105903	ENSMUSG00000098263	Mir6938	Gm27519|mmu-mir-6938	microRNA 6938	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-84611190-2	chr12	84611090	84611290	+	588.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_008992, intron 7 of 18)	intron (NM_008992, intron 7 of 18)	6276.0	NM_008992	19300.0	Mm.229109	NM_008992	ENSMUSG00000021240	Abcd4	P69r|P70R|Pxmp1l	ATP-binding cassette, sub-family D (ALD), member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27425871-4	chr2	27425787	27425987	+	842.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009500, intron 1 of 27)	CpG	1721.0	NR_133905	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-65950753-3	chr17	65950653	65950853	+	962.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023053, intron 1 of 4)	CpG	434.0	NM_023053	65960.0	Mm.10153	NM_023053	ENSMUSG00000024098	Twsg1	1810013J15Rik|9030422N06Rik|AW552143|D17Ertd403e|Tsg|Twg	twisted gastrulation BMP signaling modulator 1	protein-coding	0.513057865791462	0.121734707940436	0.73283391862858	0.108763108063415	0.100683810416555	0.123372173060244	1.04293976047556	0.109756667028214	0.188594499350853	0.928851686552813	1
Merged-chr15-96729245-3	chr15	96729149	96729349	+	847.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29521.0	NM_175121	67760.0	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-90201234-2	chr9	90201134	90201334	+	570.025024	f1_balb.idr|f1_c57bl6.idr	TTS (NM_194334)	TTS (NM_194334)	38256.0	NM_001311115	108153.0	Mm.102141	NM_001003911	ENSMUSG00000032363	Adamts7	ADAM-TS7|ADAMTS7B	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-88048379-4	chr11	88048275	88048475	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001078167, intron 1 of 2)	CpG	1002.0	NM_173374	110809.0	Mm.391719	NM_173374	ENSMUSG00000018379	Srsf1	1110054N12Rik|5730507C05Rik|6330415C05Rik|AI482334|AW491331|Asf|Sf2|Sfrs1	serine/arginine-rich splicing factor 1	protein-coding	0.834603305556094	0.890038189017605	1.7002891988217	1.74976902139298	1.33352571323617	1.65598242429241	2.01416920023908	0.860902040010872	0.535878066431558	0.695463212819685	0.997923870727665
Merged-chr7-82820846-1	chr7	82820746	82820946	+	546.0	f0_balb.idr	Intergenic	Intergenic	-46487.0	NM_175366	108797.0	Mm.306789	NM_175366	ENSMUSG00000057706	Mex3b	4931439A04Rik|M-04814|Rkhd3|mKIAA2009	mex3 RNA binding family member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-31784825-2	chr2	31784725	31784925	+	701.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001283046, intron 5 of 11)	intron (NM_001283046, intron 5 of 11)	24652.0	NM_001283045	11350.0	Mm.1318	NM_009594	ENSMUSG00000026842	Abl1	AI325092|Abl|E430008G22Rik|c-Abl	c-abl oncogene 1, non-receptor tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-82913528-3	chr6	82913440	82913640	+	998.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011350, exon 14 of 14)	exon (NM_011350, exon 14 of 14)	26229.0	NM_001308374	20355.0	Mm.270543	NM_011350	ENSMUSG00000000627	Sema4f	Sema W	sema domain, immunoglobulin domain (Ig), TM domain, and short cytoplasmic domain	protein-coding	1.62714099747219	1.77469498637983	0.727207081999479	0.713194597961131	0.692778581978221	1.99305925302996	0.731151068929965	1.42203512303871	0.0908611564427836	0.952609469745611	0.998431161219273
Merged-chr8-119412807-4	chr8	119412682	119412882	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17890.0	NM_019966	56690.0	Mm.423037	NM_019966	ENSMUSG00000074064	Mlycd	AI324784|Mcd	malonyl-CoA decarboxylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76466370-2	chr15	76466270	76466470	+	716.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013481, intron 3 of 15)	intron (NM_013481, intron 3 of 15)	8932.0	NM_198885	20289.0	Mm.322821	NM_198885	ENSMUSG00000034161	Scx	BB114693|Bhlha41|Scl	scleraxis	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-132788003-3	chr7	132787895	132788095	+	846.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_212473, intron 1 of 4)	intron (NM_212473, intron 1 of 4)	-1060.0	NM_175268	77938.0	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-156312152-3	chr2	156312068	156312268	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001316755)	promoter-TSS (NM_001316755)	-305.0	NM_027585	70873.0	Mm.475234	NM_027585	ENSMUSG00000038085	Cnbd2	4921517L17Rik|5430421B09Rik|Cris	cyclic nucleotide binding domain containing 2	protein-coding	4.52786516835626	5.0204392981913	4.45766132604728	5.09099330880515	4.74298430325677	4.52111739734586	4.78070705661696	4.24792450510521	-0.259506040511393	0.474856153583987	0.927029054433838
Merged-chr8-36868192-2	chr8	36868097	36868297	+	808.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001194940, intron 2 of 17)	intron (NM_001194940, intron 2 of 17)	84245.0	NM_001194940	50768.0	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	1.21636869605872	2.16452320171357	0.881049437122318	1.58698889236406	0.83919644401155	2.18311043170926	0.885820263674781	1.83171993538785	0.063476907534663	0.962318641115418	0.998431161219273
Merged-chr16-43108021-4	chr16	43107930	43108130	+	997.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285805, intron 2 of 10)	intron (NM_001285805, intron 2 of 10)	-139254.0	NM_181058	56490.0	Mm.136238	NM_019778	ENSMUSG00000022708	Zbtb20	1300017A20Rik|7330412A13Rik|A930017C21Rik|D16Wsu73e|DPZF|HOF|J20|ODA-8S|Oda8|Tg(PDGFB-APPSwInd)20Lms|Zfp288	zinc finger and BTB domain containing 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-104204149-2	chr9	104204049	104204249	+	808.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359740, intron 23 of 56)	B3|SINE|B2	58781.0	NM_001359740	235567.0	Mm.217256	NM_001163026	ENSMUSG00000032560	Dnajc13	D030002L11Rik|Gm1124|RME-8|Rme8|mKIAA0678	DnaJ heat shock protein family (Hsp40) member C13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-7833811-4	chr10	7833696	7833896	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172785, intron 1 of 5)	intron (NM_172785, intron 1 of 5)	1326.0	NM_172785	237256.0	Mm.140055	NM_172785	ENSMUSG00000039981	Zc3h12d	D730019B10Rik|TFL	zinc finger CCCH type containing 12D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-6601071-2	chr15	6600971	6601171	+	710.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011815, intron 1 of 17)	B1_Mur2|SINE|Alu	21224.0	NM_011815	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-120834246-2	chr7	120834146	120834346	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8585.0	NM_007908	13631.0	Mm.25997	NM_007908	ENSMUSG00000035064	Eef2k	C86191|eEF-2K	eukaryotic elongation factor-2 kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-58981445-2	chr11	58981323	58981523	+	678.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_053168, intron 2 of 5)	intron (NM_053168, intron 2 of 5)	3330.0	NM_053168	94091.0	Mm.248049	NM_053168	ENSMUSG00000020455	Trim11	-	tripartite motif-containing 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-145295842-4	chr4	145295772	145295972	+	796.895874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009401, intron 4 of 12)	intron (NM_009401, intron 4 of 12)	19275.0	NM_009401	21941.0	Mm.12810	NM_009401	ENSMUSG00000028602	Tnfrsf8	Cd30|D1S166E|Ki|Ki-1	tumor necrosis factor receptor superfamily, member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-47284253-1	chr4	47284153	47284353	+	576.0	f0_c57.idr	intron (NM_009928, intron 20 of 39)	intron (NM_009928, intron 20 of 39)	-68969.0	NM_001312868	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-3028771-2	chr9	3028651	3028851	+	982.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	GSAT_MM|Satellite|Satellite	9992.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56553164-4	chr17	56553071	56553271	+	808.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_130128, intron 2 of 3)	intron (NR_130128, intron 2 of 3)	1216.0	NR_130128	100504425.0	Mm.384143	NR_130128	ENSMUSG00000110218	Gm20219	Tincr	predicted gene, 20219	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-50867096-4	chr15	50867008	50867208	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_032000, intron 1 of 5)	intron (NM_032000, intron 1 of 5)	21941.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-122300690-1	chr3	122300590	122300790	+	570.0	f1_balb.idr	Intergenic	Intergenic	-6987.0	NR_030439	791077.0		NR_030439	ENSMUSG00000076456	Mir760	Mirn760|mir-760|mmu-mir-760	microRNA 760	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-75071217-2	chr8	75071117	75071317	+	727.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22401.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-105300130-4	chr13	105300028	105300228	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5643.0	NM_001360891	71816.0	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-37933256-4	chr18	37933179	37933379	+	886.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305981, intron 1 of 28)	intron (NM_001305981, intron 1 of 28)	2197.0	NM_001305981	13367.0	Mm.195916	NM_007858	ENSMUSG00000024456	Diaph1	D18Wsu154e|Dia1|Diap1|Drf1|p140mDia	diaphanous related formin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-108697734-2	chr8	108697634	108697834	+	776.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16910.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-69625410-8	chr8	69625341	69625541	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001045553)	promoter-TSS (NM_001045553)	107.0	NM_172754	234362.0	Mm.458487	NM_172754	ENSMUSG00000060427	Zfp868	AI449175|AW108241|C530032E20|mszf62	zinc finger protein 868	protein-coding	5.96136260027723	5.2504388029664	5.62732240761548	4.79573157308864	5.80167430377313	5.877139751552	6.08799659902204	5.7990500249301	0.461775101315168	0.108570406674831	0.515960287543422
Merged-chr6-88030620-4	chr6	88030519	88030719	+	979.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293652, intron 1 of 7)	intron (NM_001293652, intron 1 of 7)	-10824.0	NM_001293654	19349.0	Mm.333233	NM_009005	ENSMUSG00000079477	Rab7	Rab7a	RAB7, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-80793977-3	chr8	80793852	80794052	+	775.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021356, intron 2 of 9)	intron (NM_021356, intron 2 of 9)	-54493.0	NM_053124	93762.0	Mm.246803	NM_053124	ENSMUSG00000031715	Smarca5	4933427E24Rik|D030040M08Rik|D330027N15Rik|MommeD4|Snf2h	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-92503042-3	chr5	92502875	92503075	+	900.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007644, intron 1 of 11)	Arthur1A|DNA|hAT-Tip100	2682.0	NM_007644	12492.0	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-18609680-3	chr2	18609479	18609679	+	662.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-62883.0	NM_147778	12238.0	Mm.249586	NM_147778	ENSMUSG00000051154	Commd3	AW550818|Bup|D2Ertd542e	COMM domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-93486732-4	chr1	93486635	93486835	+	873.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159719, intron 1 of 12)	B2_Mm1a|SINE|B2	7674.0	NM_001159719	18000.0	Mm.428652	NM_010891	ENSMUSG00000026276	Sept2	AW208991|Nedd-5|Nedd5|mKIAA0158	septin 2	protein-coding	1.13126098468054	0.736955831933592	1.57505116961984	1.60816649963333	0.701825061292812	0.739669704207437	1.24965131034089	1.20601048816518	-1.32639753309665	0.370093989458559	0.863700645402606
Merged-chr11-72520074-3	chr11	72519978	72520178	+	655.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029932, intron 8 of 11)	intron (NM_029932, intron 8 of 11)	-30158.0	NM_153060	216892.0	Mm.212812	NM_153060	ENSMUSG00000040447	Spns2	-	spinster homolog 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-48244040-2	chr17	48243940	48244140	+	563.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347399, intron 2 of 2)	intron (NM_001347399, intron 2 of 2)	-3689.0	NM_021407	58218.0	Mm.302438	NM_021407	ENSMUSG00000041754	Trem3	BB134760	triggering receptor expressed on myeloid cells 3	protein-coding	-0.0825864112023436	-0.0187551620285887	-0.214393552427172	-0.217898582999264	-0.0785538560018205	0.51425280422216	-0.213390966496878	-0.0527940237954272	2.02228993657675	0.349307101621637	1
Merged-chr13-5800496-2	chr13	5800396	5800596	+	741.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57596.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-8841840-2	chr4	8841740	8841940	+	966.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355382, intron 18 of 36)	L1MB7|LINE|L1	90516.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-65372874-4	chr3	65372777	65372977	+	874.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357358, intron 13 of 13)	intron (NM_001357358, intron 13 of 13)	19676.0	NM_026155	67437.0	Mm.232728	NM_026155	ENSMUSG00000027828	Ssr3	0610038P07Rik|AL022999|AU022074|AW553833|TRAPG	signal sequence receptor, gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167710309-2	chr2	167710209	167710409	+	834.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19132.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-8679341-2	chr5	8679241	8679441	+	712.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011076, intron 6 of 29)	intron (NM_011076, intron 6 of 29)	-56389.0	NM_198620	242819.0	Mm.332192	NM_198620	ENSMUSG00000040570	Rundc3b	Gm440	RUN domain containing 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-54995360-3	chr11	54995279	54995479	+	886.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_138556, intron 14 of 24)	MIR3|SINE|MIR	-32439.0	NM_001271455	57783.0	Mm.259671	NM_021327	ENSMUSG00000020400	Tnip1	ABIN|ABIN-1|ABIN1|AU018810|Naf1|Nef|VAN	TNFAIP3 interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-16220861-2	chr15	16220761	16220961	+	582.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2A|LINE|L1	-557240.0	NM_009869	12565.0	Mm.439758	NM_009869	ENSMUSG00000025370	Cdh9	-	cadherin 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-185350055-3	chr1	185349950	185350150	+	987.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347210, intron 7 of 9)	intron (NM_001347210, intron 7 of 9)	-12994.0	NM_029735	107508.0	Mm.154511	NM_029735	ENSMUSG00000026615	Eprs	2410081F06Rik|3010002K18Rik|C79379|Qprs	glutamyl-prolyl-tRNA synthetase	protein-coding	-0.534388506781735	-0.523597440597858	-0.527143792595005	-0.529872616101994	-0.269343640323368	-0.330307306404647	-0.526362531683804	0.0909924714903898	3.41291282967153	0.18290447820843	1
Merged-chr17-10764511-4	chr17	10764410	10764610	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027032, intron 2 of 4)	Lx7|LINE|L1	75681.0	NM_027032	69310.0	Mm.18889	NM_027032	ENSMUSG00000037196	Pacrg	1700008H23Rik	PARK2 co-regulated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-19872999-4	chr4	19872897	19873097	+	993.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49569.0	NM_175406	242341.0	Mm.19298	NM_175406	ENSMUSG00000028238	Atp6v0d2	1620401A02Rik|AI324824|V-ATPase	ATPase, H+ transporting, lysosomal V0 subunit D2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-18548738-5	chr19	18548609	18548809	+	629.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	83104.0	NM_017375	20409.0	Mm.172222	NM_017375	ENSMUSG00000024725	Ostf1	C78236|SH3P2|Sh3d3	osteoclast stimulating factor 1	protein-coding	-0.615199253409485	-0.847850756076199	-0.852543267469836	-0.704572031078934	-0.609365715699889	-0.84534768159575	-0.852001820715513	-0.702115704238587	0.0371181303275201	0.98909404214881	1
Merged-chr13-34726370-1	chr13	34726270	34726470	+	544.0	f0_balb.idr	Intergenic	Intergenic	-13272.0	NM_138746	108161.0	Mm.41991	NM_138746	ENSMUSG00000038246	Fam50b	D0H6S2654E|X5L|XAP-5-like	family with sequence similarity 50, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-52415862-2	chr10	52415762	52415962	+	598.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1685.0	NM_030250	52014.0	Mm.199964	NM_030250	ENSMUSG00000023068	Nus1	1600027K07Rik|AU019165|AW538011|BC003223|D10Ertd438e	NUS1 dehydrodolichyl diphosphate synthase subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-52703318-4	chr1	52703232	52703432	+	799.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357464, intron 2 of 7)	intron (NM_001357464, intron 2 of 7)	23986.0	NM_178081	98682.0	Mm.491173	NM_133829	ENSMUSG00000041439	Mfsd6	2210010L05Rik|9630025I22Rik|AI836200|AW212394|MMR2	major facilitator superfamily domain containing 6	protein-coding	1.92729341485058	1.45103093457595	2.26543637419613	2.3384121848206	2.64983312463621	3.56852613279347	2.5597607615756	3.10474877680522	2.02521613284729	0.0123952062803729	0.126604158585625
Merged-chr16-3956635-3	chr16	3956529	3956729	+	767.355591	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081280, intron 7 of 17)	RMER19B|LTR|ERVK	20003.0	NM_175547	268857.0	Mm.215994	NM_175547	ENSMUSG00000049871	Nlrc3	CLR16.2|D230007K08Rik|mFLJ00348	NLR family, CARD domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180946998-2	chr1	180946898	180947098	+	732.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144794, intron 2 of 22)	intron (NM_144794, intron 2 of 22)	4480.0	NM_144794	208795.0	Mm.185518	NM_144794	ENSMUSG00000026519	Tmem63a	BC014795|Tmem64a	transmembrane protein 63a	protein-coding	-1.20406370813143	-1.56956373024278	-1.57884638916872	-1.58647144159385	-1.598104728449	-1.56755213932999	-1.57674499865798	-1.58510656085539	-1.70745470802464	0.626337835847419	1
Merged-chr1-10231822-2	chr1	10231722	10231922	+	695.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001102430, intron 1 of 37)	intron (NM_001102430, intron 1 of 37)	848.0	NM_001102430	211673.0	Mm.229141	NM_001102430	ENSMUSG00000067851	Arfgef1	ARFGEP1|BIG1|D130059B05Rik|D730028O18Rik|P200	ADP-ribosylation factor guanine nucleotide-exchange factor 1(brefeldin A-inhibited)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19306018-2	chr7	19305918	19306118	+	928.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347586, intron 3 of 4)	intron (NM_001347586, intron 3 of 4)	4027.0	NM_008036	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-93990474-3	chr13	93990383	93990583	+	868.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-67313.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-113015303-6	chr5	113015279	113015479	+	905.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177078, exon 1 of 21)	exon (NM_177078, exon 1 of 21)	159.0	NM_001285806	320129.0	Mm.285619	NM_177078	ENSMUSG00000042249	Grk3	4833444A01Rik|AI851927|AW551196|Adrbk-2|Adrbk2|Bark-2	G protein-coupled receptor kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19026826-2	chr7	19026726	19026926	+	718.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360713, intron 1 of 22)	(T)n|Simple_repeat|Simple_repeat	2449.0	NM_026605	68188.0	Mm.130902	NM_026605	ENSMUSG00000023118	Sympk	1500016F02Rik|4632415H16Rik|AA125406|AI449890|SPK|SYM	symplekin	protein-coding	0.999596464854212	2.09841548645045	0.838968427388593	1.53048955337916	1.00721322380583	2.1167689426461	0.84335812335072	1.53970216208897	0.0365530076730525	0.977942941547392	0.998431161219273
Merged-chr11-49090312-1	chr11	49090212	49090412	+	549.0	f1_balb.idr	intron (NM_008330, intron 1 of 1)	intron (NM_008330, intron 1 of 1)	3295.0	NM_008330	15953.0	Mm.24769	NM_008330	ENSMUSG00000078920	Ifi47	47kDa|IRG-47|Ifggc1|Igrd|Iigp4|Iipg4|Irgd	interferon gamma inducible protein 47	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70462189-2	chr11	70462089	70462289	+	602.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_001348337, exon 4 of 14)	exon (NM_001348337, exon 4 of 14)	-2205.0	NM_023158	66102.0	Mm.425692	NM_023158	ENSMUSG00000018920	Cxcl16	0910001K24Rik|AV290116|BB024863|CXCL16v1|CXCL16v2|SR-PSOX|Zmynd15|b2b498Clo	chemokine (C-X-C motif) ligand 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-173452139-3	chr2	173452111	173452311	+	866.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Charlie5|DNA|hAT-Charlie	-70381.0	NM_028158	72221.0	Mm.46132	NM_028158	ENSMUSG00000027518	1700021F07Rik	-	RIKEN cDNA 1700021F07 gene	protein-coding	0.308913242604712	0.528527671454557	0.184250560665187	0.179967090553884	0.539520164094911	0.535878026054052	0.739178414665198	0.180714759855066	1.57644383055009	0.407895890689065	1
Merged-chr17-29376702-1	chr17	29376602	29376802	+	656.0	f1_c57bl6.idr	intron (NM_001159538, intron 13 of 15)	intron (NM_001159538, intron 13 of 15)	15788.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	0.983745778855792	1.1543271879311	1.95756807228259	0.508264450908584	0.491888820613491	0.537033338387524	0.52274320773993	1.19879833098634	-2.23388618891604	0.17318353489684	0.640902961210202
Merged-chr8-84910139-4	chr8	84910041	84910241	+	923.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010062, intron 5 of 5)	intron (NM_010062, intron 5 of 5)	1517.0	NM_010062	13423.0	Mm.350831	NM_010062	ENSMUSG00000003812	Dnase2a	Dnase2	deoxyribonuclease II alpha	protein-coding	2.75533428858127	2.58244847095269	2.98627775401355	3.31260133726988	2.77822373855931	2.60153448226536	3.00934049255438	3.63155070887299	0.236805760397476	0.722227813171686	0.998431161219273
Merged-chr4-43421955-2	chr4	43421855	43422055	+	940.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_199057, exon 3 of 12)	exon (NM_199057, exon 3 of 12)	7179.0	NM_177377	329831.0	Mm.454466	NM_177377	ENSMUSG00000042788	Fam166b	4833436C18Rik	family with sequence similarity 166, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-10706186-4	chr8	10706096	10706296	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	176258.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70605009-3	chr8	70604855	70605055	+	853.8666380000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_133772, intron 1 of 16)	intron (NM_133772, intron 1 of 16)	3359.0	NM_133772	76900.0	Mm.6667	NM_133772	ENSMUSG00000070003	Ssbp4	1210002E11Rik|AW743380|Sspb4	single stranded DNA binding protein 4	protein-coding	-0.518541176163136	-0.509009667874627	-0.512154620832384	-0.51456626543881	-0.384773024450074	-0.326646499559141	-0.20519890947394	-0.117805912763209	3.29312751218991	0.173940640428568	1
Merged-chr10-105490892-3	chr10	105490808	105491008	+	980.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177368, intron 1 of 11)	intron (NM_177368, intron 1 of 11)	83571.0	NM_177368	278279.0	Mm.25225	NM_177368	ENSMUSG00000036019	Tmtc2	8430438D04Rik|D330034A10Rik	transmembrane and tetratricopeptide repeat containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-17730452-4	chr18	17730347	17730547	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-149457.0	NR_045374	75162.0	Mm.60874	NR_045374		4930545E07Rik	-	RIKEN cDNA 4930545E07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-73703838-4	chr18	73703756	73703956	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008540)	promoter-TSS (NM_008540)	-70.0	NR_155448	105246496.0	Mm.109270	NR_155448		4930578L24Rik	-	RIKEN cDNA 4930578L24 gene	ncRNA	4.92730251812179	4.83803988580118	4.9806622046365	5.03031416813127	4.46823130294521	4.87047275595296	4.57410187802019	5.05274467448935	-0.229449601696548	0.489596308331356	0.934238891709291
Merged-chr9-14765020-3	chr9	14764932	14765132	+	876.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029306, intron 2 of 3)	intron (NM_029306, intron 2 of 3)	5998.0	NM_029306	69325.0	Mm.440453	NM_029306	ENSMUSG00000031927	1700012B09Rik	1700007P19Rik	RIKEN cDNA 1700012B09 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-75121836-3	chr14	75121732	75121932	+	857.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027581, intron 5 of 9)	intron (NM_027581, intron 5 of 9)	9051.0	NM_027581	70859.0	Mm.320289	NM_027581	ENSMUSG00000021997	Lrrc63	4921509B22Rik	leucine rich repeat containing 63	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43046772-2	chr4	43046672	43046872	+	791.083374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172691)	promoter-TSS (NM_172691)	-552.0	NM_172691	230088.0	Mm.260162	NM_172691	ENSMUSG00000036002	Fam214b	B230312A22Rik	family with sequence similarity 214, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-103025552-4	chr4	103025455	103025655	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290648, intron 2 of 2)	intron (NM_001290648, intron 2 of 2)	1173.0	NM_011831	23919.0	Mm.100163	NM_011831	ENSMUSG00000066090	Insl5	RIF2	insulin-like 5	protein-coding	3.09731409994124	3.07452230818305	3.27117410071061	2.3273637299161	2.95275108621322	3.40839395429539	3.20354226617368	4.08089153000688	0.818662219360899	0.191388773104249	0.66966064502007
Merged-chr3-86998782-4	chr3	86998694	86998894	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007639, exon 2 of 6)	exon (NM_007639, exon 2 of 6)	546.0	NM_007639	12479.0	Mm.1894	NM_007639	ENSMUSG00000028076	Cd1d1	AI747460|CD1.1|Cd1a|Cd1d|Ly-38	CD1d1 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-85495116-1	chr1	85495016	85495216	+	754.0	f1_balb.idr	Intergenic	Intergenic	103694.0	NM_030194	109032.0	Mm.335802	NM_030194	ENSMUSG00000070034	Sp110	5031415C07Rik|52kDa|5830484A20Rik|Ifi75|Ipr1	Sp110 nuclear body protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-108185484-4	chr6	108185363	108185563	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_145937, exon 1 of 9)	exon (NM_145937, exon 1 of 9)	120.0	NM_145937	58911.0	Mm.439876	NM_145937	ENSMUSG00000030101	Sumf1	AA543204|AI463102|AI851573|FGE	sulfatase modifying factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-79467102-4	chr15	79466998	79467198	+	816.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24955.0	NM_001359863	27373.0	Mm.30199	NM_013767	ENSMUSG00000022433	Csnk1e	AI426939|AI551861|AW457082|CK1epsilon|CKIe|KC1epsilon|tau	casein kinase 1, epsilon	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-120152998-4	chr6	120152969	120153169	+	969.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016718, intron 1 of 3)	B1_Mm|SINE|Alu	-40754.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-26482932-1	chr2	26482832	26483032	+	632.0	f0_balb.idr	intron (NM_008714, intron 4 of 33)	intron (NM_008714, intron 4 of 33)	-12813.0	NR_105962	102465602.0		NR_105962	ENSMUSG00000098548	Mir6996	Gm27531|mmu-mir-6996	microRNA 6996	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-55388852-3	chr12	55388835	55389035	+	934.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310583, intron 1 of 6)	intron (NM_001310583, intron 1 of 6)	4713.0	NM_001310583	26443.0	Mm.30210	NM_011968	ENSMUSG00000021024	Psma6	IOTA	proteasome (prosome, macropain) subunit, alpha type 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-58076311-1	chr14	58076211	58076411	+	609.0	f0_balb.idr	intron (NM_013518, intron 1 of 2)	CpG	3625.0	NM_013518	14180.0	Mm.8846	NM_013518	ENSMUSG00000021974	Fgf9	Eks	fibroblast growth factor 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-92455908-4	chr2	92455758	92455958	+	893.758301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_211358, intron 1 of 1)	intron (NM_211358, intron 1 of 1)	3936.0	NM_211358	228368.0	Mm.273990	NM_145832	ENSMUSG00000049922	Slc35c1	E430007K15Rik|fuct1	solute carrier family 35, member C1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5529546-4	chr19	5529452	5529652	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19035.0	NM_001024560	225861.0	Mm.20071	NM_001024560	ENSMUSG00000056185	Snx32	B930037P14Rik|Snx6b	sorting nexin 32	protein-coding	3.55273538797779	2.93502407882016	2.83459227303503	2.36892995337694	1.72109480949011	3.16835960204816	3.39115075750181	2.87247878488479	-0.135132728195556	0.856404276664318	0.998431161219273
Merged-chr7-122919652-3	chr7	122919548	122919748	+	767.344421	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50811.0	NR_045614	73951.0	Mm.389936	NR_045614		4930413G21Rik	-	RIKEN cDNA 4930413G21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-98683364-4	chr15	98683272	98683472	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5911.0	NM_172612	223881.0	Mm.274010	NM_172612	ENSMUSG00000054855	Rnd1	A830014L09Rik|Arhs	Rho family GTPase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-75566228-2	chr15	75566128	75566328	+	549.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_011837, exon 2 of 4)	exon (NM_011837, exon 2 of 4)	420.0	NM_001135689	23934.0	Mm.22154	NM_011837	ENSMUSG00000022577	Ly6h	-	lymphocyte antigen 6 complex, locus H	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-177703079-4	chr1	177703014	177703214	+	881.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26700.0	NM_027077	69428.0	Mm.84467	NM_027077	ENSMUSG00000015962	1700016C15Rik	-	RIKEN cDNA 1700016C15 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45833325-2	chr7	45833225	45833425	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008172, exon 12 of 12)	exon (NM_008172, exon 12 of 12)	-2536.0	NM_153419	101612.0	Mm.274847	NM_153419	ENSMUSG00000053801	Grwd1	A301|AI504353|Grwd|Wdr28	glutamate-rich WD repeat containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-120522009-2	chr5	120521909	120522109	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177595, intron 8 of 13)	intron (NM_001177595, intron 8 of 13)	10817.0	NM_001177594	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-33931773-4	chr8	33931671	33931871	+	803.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1908.0	NM_001042675	19663.0	Mm.323997	NM_019733	ENSMUSG00000031586	Rbpms	2010300K22Rik|2700019M19Rik|AU017537|RBP-MS|hermes	RNA binding protein gene with multiple splicing	protein-coding	1.56153423653563	0.759521005792659	0.740964623455155	2.08649446206616	1.23238958811877	0.763624145404883	0.745108655251422	2.02773784649708	-0.323910178250553	0.829377902958642	0.998431161219273
Merged-chr7-141369081-4	chr7	141368973	141369173	+	981.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3963.0	NR_033532	320871.0	Mm.475463	NM_177280	ENSMUSG00000086844	B230206H07Rik	-	RIKEN cDNA B230206H07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118107217-4	chr11	118107137	118107337	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167746, intron 18 of 80)	intron (NM_001167746, intron 18 of 80)	21982.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27680344-2	chr2	27680244	27680444	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011305, intron 1 of 9)	intron (NM_011305, intron 1 of 9)	3143.0	NM_011305	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-114168512-4	chr7	114168396	114168596	+	909.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER3|DNA|hAT-Charlie	-50715.0	NM_025846	66922.0	Mm.276572	NM_025846	ENSMUSG00000055723	Rras2	2610016H24Rik|C86394|TC21	related RAS viral (r-ras) oncogene 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35381024-3	chr17	35380924	35381124	+	849.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001143689, intron 3 of 5)	intron (NM_001143689, intron 3 of 5)	1407.0	NM_001143689	15015.0	Mm.464284	NM_001143689	ENSMUSG00000035929	H2-Q4	H-2Q4|H2-Gs10|Qa-4|Qa4|Qat-4|Qb-1|Qb1	histocompatibility 2, Q region locus 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-105122963-4	chr9	105122867	105123067	+	979.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8838.0	NM_029385	75686.0	Mm.305810	NM_029385	ENSMUSG00000032565	Nudt16	2310041H06Rik|2810047L04Rik|2900006H04Rik|AI851783	nudix (nucleoside diphosphate linked moiety X)-type motif 16	protein-coding	5.72895555951383	5.55180857982524	5.02847972356454	5.76513214659664	4.54613267103633	4.46758144417432	5.06374417696323	4.92348832070148	-0.91249568786728	0.00409902871430006	0.0573195180817857
Merged-chr18-4255742-3	chr18	4255638	4255838	+	756.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	89906.0	NM_026092	67328.0	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114873255-2	chr11	114873155	114873355	+	753.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001110337)	TTS (NM_001110337)	-16786.0	NM_001347654	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-112281931-4	chr5	112281788	112281988	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001326590, intron 1 of 5)	MER44B|DNA|TcMar-Tigger	5197.0	NM_009419	22022.0	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	2.20256835186317	1.4200024613405	2.38340600825542	2.41835841842186	2.40386246994225	2.07439159065825	2.28601868883029	2.60811740114994	0.447398957419787	0.614467187478494	0.977250439470701
Merged-chr4-124805205-4	chr4	124805092	124805292	+	866.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008636, intron 2 of 10)	intron (NM_008636, intron 2 of 10)	2643.0	NM_008636	17764.0	Mm.272397	NM_008636	ENSMUSG00000028890	Mtf1	MTF-1|Thyls	metal response element binding transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-31001187-2	chr5	31001093	31001293	+	712.0	f0_c57.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	32516.0	NM_053085	69852.0	Mm.57874	NM_053085	ENSMUSG00000006642	Tcf23	2010002O16Rik|Out|bHLHa24	transcription factor 23	protein-coding	0.58518297024329	1.32975229898314	1.79244369513427	0.408822633193689	0.393514546163125	0.43574175157144	0.422366811934557	0.967013605585749	-2.62245251416334	0.129905697598935	0.564921023139857
Merged-chr8-83903823-2	chr8	83903722	83903922	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_181039, intron 1 of 22)	intron (NM_181039, intron 1 of 22)	3724.0	NM_181039	330814.0	Mm.260733	NM_181039	ENSMUSG00000013033	Adgrl1	2900070I05Rik|AI182398|CLIBA|Lec2|Lphn1|mKIAA0821	adhesion G protein-coupled receptor L1	protein-coding	-1.84371485578039	-1.81332821174849	-1.82251738371298	-1.83006564316449	-1.84158176955426	-1.81133687985023	-1.5312619047181	-1.82871450833159	1.60090129203521	0.64914985597185	1
Merged-chr10-111109426-2	chr10	111109326	111109526	+	819.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55376.0	NM_001003717	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-60887112-4	chr8	60887063	60887263	+	855.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-3230.0	NM_028299	72612.0	Mm.25263	NM_028299	ENSMUSG00000038005	Hpf1	2700029M09Rik|C230006B22Rik|C4orf27	histone PARylation factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129795542-4	chr4	129795435	129795635	+	916.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24944.0	NM_008974	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-136708461-4	chr3	136708369	136708569	+	930.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008913, intron 1 of 13)	intron (NM_008913, intron 1 of 13)	38403.0	NM_001293622	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-104817936-6	chr3	104817854	104818054	+	997.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008619, exon 1 of 20)	exon (NM_008619, exon 1 of 20)	351.0	NM_008619	17454.0	Mm.1597	NM_008619	ENSMUSG00000002227	Mov10	C77703|Mov-10	Moloney leukemia virus 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-143475564-5	chr5	143475383	143475583	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144915, intron 4 of 14)	intron (NM_144915, intron 4 of 14)	10990.0	NM_144915	231871.0	Mm.469963	NM_144915	ENSMUSG00000039206	Daglb	E330036I19Rik	diacylglycerol lipase, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75533133-4	chr11	75533037	75533237	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199284, intron 2 of 13)	intron (NM_001199284, intron 2 of 13)	1025.0	NM_001199283	215113.0	Mm.11186	NM_173388	ENSMUSG00000038178	Slc43a2	7630402D21Rik|BC042513|Lat4	solute carrier family 43, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-84779488-6	chr7	84779431	84779631	+	931.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MD2|LINE|L1	-74040.0	NM_146415	258410.0	Mm.484702	NM_146415	ENSMUSG00000070460	Olfr291	MOR254-2	olfactory receptor 291	protein-coding	-1.06571365394681	-1.18711713657103	-1.19800301591715	-1.20694500132994	-1.21303403269979	-0.688839904867081	-1.19553869144487	-1.20534439021633	1.59386193030005	0.629040853220405	1
Merged-chr2-27769349-3	chr2	27769239	27769439	+	781.866699	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58756.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91098310-4	chr2	91098203	91098403	+	897.9833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011355, intron 1 of 4)	intron (NM_011355, intron 1 of 4)	1625.0	NM_011355	20375.0	Mm.1302	NM_011355	ENSMUSG00000002111	Spi1	Dis-1|Dis1|PU.1|Sfpi-1|Sfpi1|Spi-1|Tcfpu1|Tfpu.1	spleen focus forming virus (SFFV) proviral integration oncogene	protein-coding	1.11395864009978	1.97266925428493	1.90495821746904	1.37154574686916	2.08108386649317	2.44192834192206	2.16062697682422	1.72247141231324	1.37475712782513	0.188685679697981	0.667146596763177
Merged-chr16-13820794-2	chr16	13820694	13820894	+	662.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346109, intron 1 of 7)	B4A|SINE|B4	1543.0	NM_001346111	18203.0	Mm.380410	NM_010946	ENSMUSG00000022681	Ntan1	PNAA|PNAD	N-terminal Asn amidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30873287-4	chr7	30873195	30873395	+	867.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009845, exon 5 of 14)	exon (NM_009845, exon 5 of 14)	5733.0	NM_009845	12483.0	Mm.260994	NM_009845	ENSMUSG00000030577	Cd22	A530093D23|Lyb-8|Lyb8	CD22 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-23453564-4	chr13	23453456	23453656	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12345.0	NM_013483	12231.0	Mm.1420	NM_013483	ENSMUSG00000000706	Btn1a1	Btn	butyrophilin, subfamily 1, member A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-31823061-2	chr2	31822961	31823161	+	739.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178887, intron 4 of 6)	intron (NM_178887, intron 4 of 6)	-12481.0	NM_183424	227717.0	Mm.185027	NM_183424	ENSMUSG00000043102	Qrfp	P518	pyroglutamylated RFamide peptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-86469869-2	chr6	86469769	86469969	+	713.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_131125)	TTS (NR_131125)	10961.0	NR_131125	320486.0	Mm.391625	NR_131125	ENSMUSG00000085589	A430078I02Rik	T25621	RIKEN cDNA A430078I02 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-17508876-4	chr16	17508777	17508977	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001331226)	promoter-TSS (NM_001331226)	194.0	NM_025808	66863.0	Mm.161726	NM_025808	ENSMUSG00000022761	Lztr1	1200003E21Rik|AI591627|AW550890	leucine-zipper-like transcriptional regulator, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-95411708-2	chr8	95411608	95411808	+	599.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23161.0	NM_008187	14894.0	Mm.2080	NM_008187	ENSMUSG00000031796	Cfap20	2600014O15Rik|AL024127|Gtl3|T10-2A2	cilia and flagella associated protein 20	protein-coding	-0.413270832553205	0.248879758316469	-0.403519686790488	-0.4071766335812	-0.41236239857827	0.260274020124072	-0.402476173372258	-0.406537021983025	0.0394809277679939	0.98817139586833	1
Merged-chr9-75444598-2	chr9	75444498	75444698	+	965.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039522, intron 1 of 11)	intron (NM_001039522, intron 1 of 11)	3074.0	NM_001039522	235497.0	Mm.41508	NM_001006122	ENSMUSG00000042487	Leo1	Gm185	Leo1, Paf1/RNA polymerase II complex component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3240734-2	chr12	3240634	3240834	+	659.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_015551, intron 4 of 6)	intron (NR_015551, intron 4 of 6)	4943.0	NR_015551	74173.0	Mm.309774	NM_028796	ENSMUSG00000079179	Rab10os	1700012B15Rik|1810036A22Rik	RAB10, member RAS oncogene family, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-94158648-3	chr6	94158550	94158750	+	856.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_130996, intron 1 of 1)	intron (NR_130996, intron 1 of 1)	78792.0	NR_130996	78178.0	Mm.452749	NR_130996	ENSMUSG00000045095	4930511A08Rik	-	RIKEN cDNA 4930511A08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71670913-2	chr17	71670813	71671013	+	724.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2348.0	NM_177087	320159.0	Mm.187372	NM_177087	ENSMUSG00000045761	Togaram2	4632412N22Rik|Fam179a	TOG array regulator of axonemal microtubules 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-41768548-4	chr5	41768405	41768605	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4285.0	NM_007524	12020.0	Mm.2530	NM_007524	ENSMUSG00000049691	Nkx3-2	Bapx1|NKX3.2|Nkx-3.2	NK3 homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-81443391-4	chr6	81443319	81443519	+	978.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	452244.0	NR_106091	102465711.0		NR_106091	ENSMUSG00000106154	Mir7232	mmu-mir-7232	microRNA 7232	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-116462523-4	chr7	116462369	116462569	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER76|LTR|ERVL	-19011.0	NM_011083	18704.0	Mm.3810	NM_011083	ENSMUSG00000030660	Pik3c2a	Cpk-m|PI3KC2	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-104444305-2	chr11	104444205	104444405	+	729.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359634, intron 2 of 14)	MT2B2|LTR|ERVL	-2014.0	NM_001081045	76719.0	Mm.136418	NM_001081045	ENSMUSG00000018412	Kansl1	1700081L11Rik|9430041J06Rik|mKIAA1267	KAT8 regulatory NSL complex subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88109289-2	chr3	88109189	88109389	+	570.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001033484, exon 26 of 38)	exon (NM_001033484, exon 26 of 38)	27238.0	NM_001033484	404710.0	Mm.331133	NM_001033484	ENSMUSG00000028068	Iqgap3	AI593484|D030034H08	IQ motif containing GTPase activating protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-140940795-2	chr7	140940695	140940895	+	966.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145387)	promoter-TSS (NM_145387)	-596.0	NR_153832	212974.0	Mm.260139	NM_145387	ENSMUSG00000062031	Pgghg	5730511L01Rik|Athl1|BC023151	protein glucosylgalactosylhydroxylysine glucosidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91199811-2	chr2	91199711	91199911	+	811.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-3101.0	NM_001357067	11432.0	Mm.45570	NM_007387	ENSMUSG00000002103	Acp2	Acp-2|LAP	acid phosphatase 2, lysosomal	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-27024485-2	chr15	27024385	27024585	+	698.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-128921.0	NM_176959	448987.0	Mm.253378	NM_176959	ENSMUSG00000043556	Fbxl7	AL023057|D230018M15Rik|FBL7|Fbl6	F-box and leucine-rich repeat protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-80052732-2	chr11	80052632	80052832	+	630.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_018776, intron 6 of 7)	ID_B1|SINE|B4	28259.0	NM_001277106	54394.0	Mm.272093	NM_018776	ENSMUSG00000017561	Crlf3	BB164954|Creme9|Cytor4	cytokine receptor-like factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27359124-2	chr2	27359024	27359224	+	639.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_133905, intron 1 of 29)	intron (NR_133905, intron 1 of 29)	68484.0	NR_133905	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-4083573-3	chr11	4083482	4083682	+	921.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11849.0	NM_026443	67900.0	Mm.41719	NM_026443	ENSMUSG00000004748	Mtfp1	1700020C11Rik|2610507A21Rik|AV005788|Mtp18	mitochondrial fission process 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-136130360-2	chr1	136130260	136130460	+	816.700012	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_046167, exon 2 of 4)	non-coding (NR_046167, exon 2 of 4)	823.0	NR_046170	329253.0	Mm.487858	NR_046167	ENSMUSG00000086264	Gm15850	6530439I21	predicted gene 15850	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-96411024-4	chr11	96410914	96411114	+	983.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45256.0	NM_008266	15407.0	Mm.890	NM_008266	ENSMUSG00000018973	Hoxb1	Hox-2.9	homeobox B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33474513-2	chr16	33474413	33474613	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358570, intron 7 of 8)	MTD|LTR|ERVL-MaLR	-43816.0	NM_134251	171286.0	Mm.35253	NM_134251	ENSMUSG00000035506	Slc12a8	CCC9|E330020C02Rik	solute carrier family 12 (potassium/chloride transporters), member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-8888934-2	chr17	8888834	8889034	+	632.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347321, intron 1 of 21)	intron (NM_001347321, intron 1 of 21)	38949.0	NM_001347321	23984.0	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-38745917-2	chr19	38745817	38746017	+	695.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019588, intron 19 of 31)	intron (NM_019588, intron 19 of 31)	73320.0	NM_021315	57753.0	Mm.86482	NM_021315	ENSMUSG00000024999	Noc3l	AF233884|Fad24	NOC3 like DNA replication regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-73103522-5	chr9	73103382	73103582	+	737.039978	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001311106, exon 3 of 4)	exon (NM_001311106, exon 3 of 4)	1084.0	NM_001311106	66991.0	Mm.471745	NM_025890	ENSMUSG00000092622	Khdc3	2410004A20Rik|AI467128|FILIA|OEEP48	KH domain containing 3, subcortical maternal complex member	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-96161653-6	chr5	96161554	96161754	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285511)	promoter-TSS (NM_001285511)	101.0	NM_178854	231464.0	Mm.28374	NM_144910	ENSMUSG00000034724	Cnot6l	4932442K20Rik	CCR4-NOT transcription complex, subunit 6-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-49626740-4	chr4	49626607	49626807	+	874.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TCC)n|Simple_repeat|Simple_repeat	-5353.0	NM_001163263	109331.0	Mm.24765	NM_182999	ENSMUSG00000028309	Rnf20	4833430L21Rik|AW540162|C79397|mKIAA4116	ring finger protein 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-84624651-2	chr2	84624551	84624751	+	934.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355064, intron 1 of 18)	intron (NM_001355064, intron 1 of 18)	24829.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34285756-5	chr17	34285634	34285834	+	906.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010378, intron 1 of 4)	intron (NM_010378, intron 1 of 4)	2037.0	NM_010378	14960.0	Mm.235338	NM_010378	ENSMUSG00000036594	H2-Aa	Aalpha|H-2Aa|H2Aa|I-Aalpha|IAalpha|Ia-1|Ia1	histocompatibility 2, class II antigen A, alpha	protein-coding	3.81661982848716	4.96056788371656	4.54139087124103	3.09968095616344	3.1640947469698	4.66891314443184	3.96644689978579	3.6978254720977	-0.396752365635959	0.465802654901756	0.922736970596151
Merged-chr17-48119878-2	chr17	48119778	48119978	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26429.0	NM_001177897	328829.0	Mm.466999	NM_177824	ENSMUSG00000073386	9830107B12Rik	Trem5	RIKEN cDNA 9830107B12 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-34285519-3	chr5	34285407	34285607	+	890.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001015039, intron 1 of 12)	intron (NM_001015039, intron 1 of 12)	2817.0	NM_001015039	231125.0	Mm.113388	NM_001015039	ENSMUSG00000037224	Zfyve28	9630058O20Rik|Gm146|mKIAA1643	zinc finger, FYVE domain containing 28	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-29828759-4	chr19	29828661	29828861	+	917.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-15787.0	NM_177721	240614.0	Mm.125503	NM_177721	ENSMUSG00000074909	Ranbp6	C630001B19	RAN binding protein 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89087635-4	chr3	89087564	89087764	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028188, intron 9 of 10)	intron (NM_028188, intron 9 of 10)	2367.0	NM_001083808	72296.0	Mm.27687	NM_028188	ENSMUSG00000041263	Rusc1	2210403N08Rik|AA408288|NESCA	RUN and SH3 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-35759989-2	chr5	35759889	35760089	+	617.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177678, intron 1 of 19)	intron (NM_177678, intron 1 of 19)	2109.0	NM_001177698	231148.0	Mm.254446	NM_177678	ENSMUSG00000029095	Ablim2	AI606905|C230091L11	actin-binding LIM protein 2	protein-coding	-0.740010362248931	-0.878219495461772	-0.885747583835892	-0.888325961426182	-0.891976093305798	-0.875347529572599	-0.885011216337005	-0.126486538571356	2.28684166792884	0.445273407711896	1
Merged-chr16-56647020-4	chr16	56646919	56647119	+	851.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001014399, intron 12 of 27)	intron (NM_001014399, intron 12 of 27)	70431.0	NM_001357124	21787.0	Mm.425970	NM_019678	ENSMUSG00000022757	Tfg	AI173908	Trk-fused gene	protein-coding	2.6847426460462	3.8773194497617	4.54243696642514	4.22840566286597	3.69218181157729	5.04366025335327	4.89849085703501	4.24914700031627	0.753632731974146	0.1420497078611	0.58823483487718
Merged-chr18-61486818-4	chr18	61486703	61486903	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2196.0	NR_045419	442846.0	Mm.417648	NR_045419		A530050N04Rik	-	RIKEN cDNA A530050N04 gene	ncRNA	5.40290909253447	5.47048427071334	5.55106962059048	5.30186924817644	6.4689899811543	6.07158037020794	5.24205941101604	6.03761386132421	0.666215511222617	0.019713051774358	0.177888968963831
Merged-chr16-36675528-4	chr16	36675417	36675617	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9440.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-67398717-2	chr13	67398617	67398817	+	756.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080941, intron 1 of 3)	LTR10_RN|LTR|ERVK	1050.0	NM_001080941	72807.0	Mm.303790	NM_001080941	ENSMUSG00000078994	Zfp429	2810487A22Rik|AI929863|Rsl2	zinc finger protein 429	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-122835053-2	chr4	122834953	122835153	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-1174.0	NM_008917	19063.0	Mm.277719	NM_008917	ENSMUSG00000028657	Ppt1	9530043G02Rik|AA960502|C77813|CLN1|D4Ertd184e|INCL|PPT	palmitoyl-protein thioesterase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89419112-4	chr3	89419076	89419276	+	811.479187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016904)	promoter-TSS (NM_016904)	625.0	NM_011368	20416.0	Mm.86595	NM_011368	ENSMUSG00000042626	Shc1	Shc|ShcA|p66|p66shc	src homology 2 domain-containing transforming protein C1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-64847414-3	chr8	64847316	64847516	+	791.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178633, intron 1 of 14)	intron (NM_178633, intron 1 of 14)	2508.0	NM_178633	77113.0	Mm.350347	NM_178633	ENSMUSG00000031605	Klhl2	6030411N21Rik|8530402H02Rik|ABP-KELCH|AU020744|Mav	kelch-like 2, Mayven	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-11006856-4	chr4	11006704	11006904	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175175, intron 1 of 1)	intron (NM_175175, intron 1 of 1)	815.0	NM_175175	71801.0	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-29704765-2	chr11	29704665	29704865	+	789.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_194051, intron 1 of 8)	MLT1A|LTR|ERVL-MaLR	10991.0	NM_194051	68585.0	Mm.192580	NM_024226	ENSMUSG00000020458	Rtn4	1110020G17Rik|AA407876|AA409940|AA960376|ASY|C130026I10Rik|NOGO|NSP-CL|NgA|Nogo-A|Nogo-B|Nogo-C|mKIAA0886|mKIAA4153	reticulon 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-53085823-2	chr5	53085723	53085923	+	598.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13A|LTR|ERVK	36470.0	NM_011402	20531.0	Mm.284891	NM_011402	ENSMUSG00000029188	Slc34a2	AA536683|D5Ertd227e|NaPi-2b|Npt2b	solute carrier family 34 (sodium phosphate), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135395881-2	chr5	135395781	135395981	+	900.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1335.0	NM_148932	107939.0	Mm.28399	NM_148932	ENSMUSG00000053293	Pom121	2610027A18Rik|C80273|mKIAA0618	nuclear pore membrane protein 121	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94578157-4	chr10	94578030	94578230	+	979.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177026, intron 1 of 3)	intron (NM_177026, intron 1 of 3)	1867.0	NM_177026	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91596541-4	chr16	91596400	91596600	+	852.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030018, intron 1 of 6)	intron (NM_030018, intron 1 of 6)	1180.0	NM_030018	77975.0	Mm.290341	NM_030018	ENSMUSG00000022964	Tmem50b	AU015466|AU019872|B230114J08Rik	transmembrane protein 50B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167008501-2	chr2	167008401	167008601	+	823.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6812.0	NM_153065	228889.0	Mm.295031	NM_153065	ENSMUSG00000017999	Ddx27	C86129	DEAD (Asp-Glu-Ala-Asp) box polypeptide 27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-90281142-4	chr16	90281053	90281253	+	757.479187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346799, intron 1 of 19)	intron (NM_001346799, intron 1 of 19)	3333.0	NM_001346799	224432.0	Mm.439811	NM_178923	ENSMUSG00000022983	Scaf4	AA517739|Sfrs15|Sra4|Srsf15	SR-related CTD-associated factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180312488-4	chr1	180312294	180312494	+	880.1726070000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18082.0	NM_001081175	320404.0	Mm.132535	NM_001081175	ENSMUSG00000038855	Itpkb	1110033J02Rik|E130307H12Rik	inositol 1,4,5-trisphosphate 3-kinase B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-170702518-4	chr1	170702409	170702609	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57977.0	NM_177068	320078.0	Mm.287131	NM_177068	ENSMUSG00000038463	Olfml2b	1110018N05Rik|4832415H08Rik|AI467542	olfactomedin-like 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191131491-3	chr1	191131407	191131607	+	721.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33093.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-112416644-4	chr13	112416565	112416765	+	690.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47405.0	NM_010560	16195.0	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-88344340-1	chr17	88344240	88344440	+	633.5	f0_balb.idr	Intergenic	Intergenic	-96364.0	NM_001355743	14236.0	Mm.112824	NM_180974	ENSMUSG00000034998	Foxn2	3230402J05Rik|6030465J18Rik|Fkh19|Foxn1|HTLF	forkhead box N2	protein-coding	-0.453125936597097	-0.241017387953527	-0.444427004087853	-0.44769533801448	0.361203154772827	-0.23631285641625	-0.443493079661567	-0.447124210922664	2.70950570574531	0.283147038389	1
Merged-chr13-45389669-4	chr13	45389570	45389770	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153789)	promoter-TSS (NM_153789)	-72.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	5.7535729512857	5.3364207117131	5.77006454950517	5.56742515810907	5.3417117538578	5.47369292328382	5.2486579470359	4.92234834966969	-0.416491646460993	0.133962580792296	0.571666672850202
Merged-chr11-70375720-2	chr11	70375620	70375820	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23689.0	NM_009660	11687.0	Mm.4584	NM_009660	ENSMUSG00000018924	Alox15	12-LO|12/15-LO|15-LOX|Alox12l|L-12LO	arachidonate 15-lipoxygenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-111096565-3	chr9	111096489	111096689	+	810.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21522.0	NM_027742	71268.0	Mm.302287	NM_027742	ENSMUSG00000032497	Lrrfip2	5133400F20Rik|AI850587	leucine rich repeat (in FLII) interacting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80709749-2	chr10	80709649	80709849	+	636.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007460, intron 26 of 30)	intron (NM_007460, intron 26 of 30)	7056.0	NM_027829	71564.0	Mm.35802	NM_027829	ENSMUSG00000055862	Izumo4	9030607L17Rik|AI550407	IZUMO family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111759389-2	chr12	111759289	111759489	+	630.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361610, intron 1 of 14)	intron (NM_001361610, intron 1 of 14)	521.0	NM_001025361	16593.0	Mm.278357	NM_008450	ENSMUSG00000021288	Klc1	AI874768|Kns2	kinesin light chain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-61202081-4	chr10	61201959	61202159	+	982.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081127, intron 19 of 21)	intron (NM_001081127, intron 19 of 21)	26797.0	NM_023064	65971.0	Mm.30227	NM_023064	ENSMUSG00000020096	Tbata	1700021K02Rik|AI428928|Spatial|Titest	thymus, brain and testes associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-52951698-2	chr1	52951598	52951798	+	583.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144953, intron 1 of 1)	intron (NM_144953, intron 1 of 1)	1142.0	NM_144953	67080.0	Mm.236287	NM_144953	ENSMUSG00000043629	1700019D03Rik	2410136C24Rik|AA410151|smAKAP	RIKEN cDNA 1700019D03 gene	protein-coding	-0.294083384950798	-0.277963382818132	0.430175288204581	-0.287290034214969	-0.293070061983337	-0.276782190008417	0.44311158986884	-0.286577643912737	0.0410571026119648	0.987250810110592	1
Merged-chr11-37178178-2	chr11	37178078	37178278	+	653.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-233937.0	NM_011856	23964.0	Mm.439889	NM_011856	ENSMUSG00000049336	Tenm2	Odz2|Odz3|Ten-2|Ten-m2	teneurin transmembrane protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-119993355-3	chr2	119993248	119993448	+	825.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355293, intron 1 of 30)	MTD|LTR|ERVL-MaLR	20649.0	NM_011941	26390.0	Mm.330501	NM_011941	ENSMUSG00000033902	Mapkbp1	2810483F24Rik|AW123212|JNKBP-1|Jnkbp1|mKIAA0596	mitogen-activated protein kinase binding protein 1	protein-coding	0.626715365124713	0.677779877333713	0.895339759769941	0.648709639603011	0.996787355216043	1.59459620413212	1.40164816708292	2.05204397525522	4.30658988808241	0.00496085996791252	0.0665776262807767
Merged-chr1-172347605-4	chr1	172347497	172347697	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039484, intron 1 of 1)	Charlie1b|DNA|hAT-Charlie	6387.0	NM_001039484	16513.0	Mm.254563	NM_020269	ENSMUSG00000044708	Kcnj10	BIR10|BIRK-1|Kir1.2|Kir4.1	potassium inwardly-rectifying channel, subfamily J, member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-59539748-5	chr9	59539682	59539882	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010421, exon 1 of 14)	exon (NM_010421, exon 1 of 14)	242.0	NM_010421	15211.0	Mm.2284	NM_010421	ENSMUSG00000025232	Hexa	Hex-1	hexosaminidase A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-119055858-4	chr10	119055753	119055953	+	995.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5354.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-21722490-1	chr13	21722390	21722590	+	874.0	f0_balb.idr	TTS (NM_178200)	TTS (NM_178200)	446.0	NM_178200	319186.0	Mm.277425	NM_178200	ENSMUSG00000114279	Hist1h2bm	H2b-291b	histone cluster 1, H2bm	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-94473514-2	chr11	94473414	94473614	+	721.666626	f1_balb.idr|f1_c57bl6.idr	exon (NM_001112813, exon 1 of 35)	exon (NM_001112813, exon 1 of 35)	684.0	NM_001177888	12291.0	Mm.29585	NM_009783	ENSMUSG00000020866	Cacna1g	Cav3.1d|[a]1G|a1G|alpha-1G|mKIAA1123	calcium channel, voltage-dependent, T type, alpha 1G subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-120907005-4	chr5	120906929	120907129	+	664.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145211, intron 1 of 6)	MIR3|SINE|MIR	496.0	NM_145211	246730.0	Mm.14301	NM_145211	ENSMUSG00000052776	Oas1a	L3	2'-5' oligoadenylate synthetase 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135474546-2	chr5	135474446	135474646	+	568.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146001, intron 1 of 30)	MTD-int|LTR|ERVL-MaLR	70576.0	NM_146001	215114.0	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-106785333-4	chr3	106785231	106785431	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007651, intron 1 of 7)	AT_rich|Low_complexity|Low_complexity	4818.0	NM_007651	12508.0	Mm.316861	NM_007651	ENSMUSG00000040747	Cd53	AI323659|Ox-44|Tspan25	CD53 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-108053063-4	chr9	108052972	108053172	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177275)	promoter-TSS (NM_177275)	-87.0	NM_177275	320844.0	Mm.449806	NM_177275	ENSMUSG00000032593	Amigo3	E430002N15Rik|ali3|mKIAA1851	adhesion molecule with Ig like domain 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-52857790-4	chr2	52857707	52857907	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172409)	promoter-TSS (NM_172409)	-61.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-119345189-2	chr8	119345089	119345289	+	858.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_024219, intron 2 of 3)	B3A|SINE|B2	651.0	NM_024219	68196.0	Mm.358714	NM_024219	ENSMUSG00000031839	Hsbp1	0610007A03Rik|AA408769|Hsp25	heat shock factor binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-27275399-4	chr3	27275288	27275488	+	907.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	-41689.0	NM_009425	22035.0	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-97441984-3	chr13	97441833	97442033	+	559.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110432, intron 1 of 1)	intron (NR_110432, intron 1 of 1)	6963.0	NR_110432	100039691.0	Mm.219358	NR_110430	ENSMUSG00000078952	Lncenc1	Gm11019|Gm2373|Lincenc1|Platr18|linc-Enc1	long non-coding RNA, embryonic stem cells expressed 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-158130660-7	chr2	158130558	158130758	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009373, intron 6 of 12)	intron (NM_009373, intron 6 of 12)	15734.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89515659-4	chr3	89515576	89515776	+	906.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4488.0	NM_080466	140493.0	Mm.120250	NM_080466	ENSMUSG00000000794	Kcnn3	KCa2.3|SK3|SKCA3	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-8802497-2	chr4	8802397	8802597	+	823.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355382, intron 3 of 36)	intron (NM_001355382, intron 3 of 36)	51173.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-58640650-3	chr11	58640545	58640745	+	646.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001039047, exon 1 of 6)	exon (NM_001039047, exon 1 of 6)	180.0	NM_001039047	216781.0	Mm.339507	NM_001039047	ENSMUSG00000037124	Trim58	Gm16|Gm1783	tripartite motif-containing 58	protein-coding	1.39039804113962	2.06168679541447	0.936193606278993	1.46870147022626	1.09614255310189	0.959563475116721	1.90074905734023	2.01924492356856	0.172132636656722	0.89159322891656	0.998431161219273
Merged-chr17-78989152-4	chr17	78989051	78989251	+	935.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001171004, intron 2 of 18)	intron (NM_001171004, intron 2 of 18)	19354.0	NM_001171005	75292.0	Mm.252776	NM_029239	ENSMUSG00000024070	Prkd3	4930557O20Rik|5730497N19Rik|PKD3|Pkcnu|Prkcn	protein kinase D3	protein-coding	3.86145643112631	3.79839095941871	2.42368469106801	4.23972631435012	4.80147584384643	4.82148435013783	4.80074833865746	4.85028747932471	1.40610909188042	0.00172051531232143	0.0299749410221188
Merged-chr3-15855749-1	chr3	15855649	15855849	+	940.0	f1_c57bl6.idr	Intergenic	Intergenic	-7262.0	NM_001173459	100038947.0	Mm.330924	NM_001173459	ENSMUSG00000074677	LOC100038947	-	signal-regulatory protein beta 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-102981626-2	chr2	102981526	102981726	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-79961.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-65979459-2	chr3	65979359	65979559	+	806.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21210.0	NM_001355432	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125252907-4	chr6	125252809	125253009	+	955.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-12616.0	NR_015527	73870.0	Mm.440681	NR_015527	ENSMUSG00000108129	4930417O13Rik	-	RIKEN cDNA 4930417O13 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-121388129-4	chr5	121387986	121388186	+	779.803589	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2471.0	NM_172275	231712.0	Mm.20488	NM_172275	ENSMUSG00000042726	Trafd1	1110008K06Rik|Fln29	TRAF type zinc finger domain containing 1	protein-coding	1.70408931870285	2.25352050465336	2.54437564807443	2.47143091435642	2.95020681689818	1.4144396287858	2.92213194304866	2.12571440530132	0.487961882228975	0.591624262459297	0.969914559899697
Merged-chr1-152580615-3	chr1	152580518	152580718	+	846.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 3 of 17)	ORR1F|LTR|ERVL-MaLR	44599.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-65190756-2	chr18	65190647	65190847	+	958.5	f0_c57.idr|f1_c57bl6.idr	intron (NM_001114386, intron 19 of 30)	intron (NM_001114386, intron 19 of 30)	-58114.0	NR_029600	387231.0		NR_029600	ENSMUSG00000065402	Mir122	Mir122a|Mirn122a|mir-122|mmu-mir-122	microRNA 122	ncRNA	3.37969945834983	2.89940368071215	1.82530395582365	1.90989685480836	0.794488698207182	0.920350393776005	0.882252056500747	0.847709240646231	-6.0450794400814	4.94455562945697e-06	0.000251376179839935
Merged-chr7-116447859-2	chr7	116447759	116447959	+	894.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-4401.0	NM_011083	18704.0	Mm.3810	NM_011083	ENSMUSG00000030660	Pik3c2a	Cpk-m|PI3KC2	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-95357263-3	chr10	95357159	95357359	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045337, intron 1 of 2)	intron (NR_045337, intron 1 of 2)	20983.0	NR_045337	69629.0	Mm.250542	NR_045337	ENSMUSG00000100550	2310039L15Rik	A53T-syn|G2-3|PrPsynA53T|Tg(Prnp-SNCA*A53T)23Mkle	RIKEN cDNA 2310039L15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-99883935-4	chr12	99883839	99884039	+	763.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028354)	promoter-TSS (NM_028354)	-497.0	NM_030172	78767.0	Mm.235920	NM_030172	ENSMUSG00000021176	Efcab11	2610021K21Rik|2610110A13Rik	EF-hand calcium binding domain 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10279855-4	chr19	10279768	10279968	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198114, intron 1 of 19)	intron (NM_198114, intron 1 of 19)	25009.0	NM_198114	269060.0	Mm.329718	NM_198114	ENSMUSG00000035735	Dagla	Nsddr	diacylglycerol lipase, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-11694309-4	chr11	11694207	11694407	+	807.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301863, intron 1 of 7)	intron (NM_001301863, intron 1 of 7)	4130.0	NM_001301863	22778.0	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-127221712-2	chr1	127221612	127221812	+	576.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145128, intron 1 of 17)	B3|SINE|B2	16726.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4551169-4	chr16	4551019	4551219	+	608.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031182, intron 4 of 6)	B3|SINE|B2	8601.0	NM_031182	83383.0	Mm.273210	NM_031182	ENSMUSG00000005718	Tfap4	AI642933|AP-4|D930048N17Rik|Tcfap4|bHLHc41	transcription factor AP4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141017936-2	chr4	141017836	141018036	+	787.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_172122, exon 36 of 37)	exon (NM_172122, exon 36 of 37)	7299.0	NM_008546	17150.0	Mm.7386	NM_008546	ENSMUSG00000060572	Mfap2	AI893631|Magp|Magp1	microfibrillar-associated protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-115539137-4	chr6	115539041	115539241	+	977.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5563.0	NM_199033	381802.0	Mm.291208	NM_199033	ENSMUSG00000042389	Tsen2	AU067695	tRNA splicing endonuclease subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-50760712-2	chr4	50760612	50760812	+	794.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3A|LINE|L1	-455966.0	NM_001162865	74914.0	Mm.159368	NM_001162865	ENSMUSG00000039555	Cylc2	4930488P18Rik	cylicin, basic protein of sperm head cytoskeleton 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-14579606-4	chr1	14579533	14579733	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	176333.0	NM_001360810	17681.0	Mm.5820	NM_010827	ENSMUSG00000025930	Msc	MyoR|bHLHa22	musculin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-75821749-2	chr7	75821649	75821849	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26589.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167291837-2	chr2	167291737	167291937	+	733.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51300.0	NM_008968	19223.0	Mm.2339	NM_008968	ENSMUSG00000017969	Ptgis	Cyp8|Cyp8a1|Pgis	prostaglandin I2 (prostacyclin) synthase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99381333-4	chr15	99381248	99381448	+	938.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-10866.0	NM_001310622	22379.0	Mm.29043	NM_011711	ENSMUSG00000023008	Fmnl3	2700073B04Rik|FBP11|Wbp3|mKIAA2014	formin-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-53810389-2	chr11	53810289	53810489	+	974.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_033332, intron 3 of 3)	intron (NR_033332, intron 3 of 3)	39916.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-105745492-4	chr5	105745327	105745527	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122768, intron 2 of 2)	intron (NM_001122768, intron 2 of 2)	44617.0	NM_178701	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	5.38873730878327	4.23950552054655	3.27415663024849	4.61531614269947	4.79041759902727	5.38055645408562	3.17219747042142	4.35713938483473	0.0553470469374664	0.917026264380856	0.998431161219273
Merged-chr1-149954164-4	chr1	149954059	149954259	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008869, intron 1 of 17)	intron (NM_008869, intron 1 of 17)	7131.0	NM_008869	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-128745365-4	chr7	128745263	128745463	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029982, intron 1 of 18)	L2c|LINE|L2	493.0	NM_001029982	207352.0	Mm.297105	NM_001029982	ENSMUSG00000055319	Sec23ip	D7Ertd373e|p125	Sec23 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128467718-4	chr2	128467607	128467807	+	890.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38356.0	NR_028590	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	1.08478889120703	0.899349806001364	0.71429444001899	0.958115372632501	1.17812742680479	0.743457718139605	0.538599414750202	0.531739099537669	-0.710633495380519	0.651464445689735	1
Merged-chr1-106713866-1	chr1	106713766	106713966	+	995.0	f0_balb.idr	5' UTR (NM_177410, exon 1 of 1)	5' UTR (NM_177410, exon 1 of 1)	424.0	NM_009741	12043.0	Mm.257460	NM_009741	ENSMUSG00000057329	Bcl2	AW986256|Bcl-2|C430015F12Rik|D630044D05Rik|D830018M01Rik	B cell leukemia/lymphoma 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-32857361-1	chr18	32857261	32857461	+	945.0	f0_balb.idr	intron (NM_001110015, intron 16 of 22)	intron (NM_001110015, intron 16 of 22)	-20074.0	NR_045381	75795.0	Mm.382634	NR_045381	ENSMUSG00000097553	4930455D15Rik	-	RIKEN cDNA 4930455D15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105596764-7	chr8	105596573	105596773	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8556.0	NM_001081241	75687.0	Mm.41261	NM_001081241	ENSMUSG00000038604	Ripor1	2310066E14Rik|AI837433|Fam65a	RHO family interacting cell polarization regulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-132656778-4	chr7	132656661	132656861	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029609, intron 6 of 6)	intron (NM_029609, intron 6 of 6)	46118.0	NM_029609	76429.0	Mm.276721	NM_029609	ENSMUSG00000030946	Lhpp	2310007H09Rik	phospholysine phosphohistidine inorganic pyrophosphate phosphatase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-128655518-2	chr4	128655418	128655618	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001195130, intron 1 of 14)	intron (NM_001195130, intron 1 of 14)	816.0	NM_001195130	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-97546326-4	chr13	97546232	97546432	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13668.0	NR_046157	328314.0	Mm.138047	NR_046157	ENSMUSG00000110235	Gm5086	B230311A21|EG328314	predicted gene 5086	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-106947076-4	chr13	106946968	106947168	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025447)	promoter-TSS (NM_025447)	-61.0	NM_025447	66254.0	Mm.9563	NM_025447	ENSMUSG00000021692	Dimt1	1500031M22Rik|AV111347|Dimt1l	DIM1 dimethyladenosine transferase 1-like (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-136199674-2	chr5	136199574	136199774	+	887.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025774)	promoter-TSS (NM_025774)	-720.0	NM_025774	66801.0	Mm.425295	NM_025774	ENSMUSG00000039737	Prkrip1	8430424D23Rik|C114	Prkr interacting protein 1 (IL11 inducible)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-56434748-4	chr12	56434640	56434840	+	923.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-88846.0	NM_145442	217588.0	Mm.25656	NM_145442	ENSMUSG00000021028	Mbip	4933408E06Rik	MAP3K12 binding inhibitory protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132411855-3	chr4	132411759	132411959	+	861.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161797, intron 2 of 12)	intron (NM_001161797, intron 2 of 12)	10587.0	NM_001161797	100169.0	Mm.158361	NM_175306	ENSMUSG00000066043	Phactr4	3110001B12Rik|AI527228|AW495572|C330013F19Rik|N28169|mKIAA4120	phosphatase and actin regulator 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-117131555-1	chr5	117131455	117131655	+	1000.0	f1_balb.idr	intron (NM_001199685, intron 1 of 20)	intron (NM_001199685, intron 1 of 20)	-2033.0	NM_001081308	330177.0	Mm.24343	NM_183306	ENSMUSG00000061288	Taok3	2900006A08Rik|A130052D22|A430105I05Rik	TAO kinase 3	protein-coding	0.53222129468958	0.769384617144765	0.28795828051875	0.283248858328224	0.538825805090748	0.77883276118484	0.289305711465955	0.699673676521382	0.687090696826335	0.704049785462762	1
Merged-chr13-21159455-2	chr13	21159355	21159555	+	754.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16400.0	NM_146534	258527.0	Mm.271440	NM_146534	ENSMUSG00000045474	Olfr1368	MOR256-15	olfactory receptor 1368	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-20425936-4	chr16	20425844	20426044	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176839, intron 1 of 6)	CpG	450.0	NM_013790	27416.0	Mm.20845	NM_013790	ENSMUSG00000022822	Abcc5	2900011L11Rik|AI132311|Abcc5a|Abcc5b|Mrp5	ATP-binding cassette, sub-family C (CFTR/MRP), member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-46384503-6	chr17	46384429	46384629	+	759.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021346, intron 1 of 7)	intron (NM_021346, intron 1 of 7)	763.0	NM_021346	57908.0	Mm.439916	NM_021346	ENSMUSG00000015597	Zfp318	2610034E08Rik|D530032D06Rik|TZF|Znf318	zinc finger protein 318	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65577100-5	chr9	65577034	65577234	+	937.4266359999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153119, intron 1 of 5)	intron (NM_153119, intron 1 of 5)	2953.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	2.72671287610439	2.96285627836649	2.3099353504247	2.94612824023292	2.15278628230178	2.78642388216712	2.32751606470942	2.10891580845683	-0.831455236946922	0.274202932437345	0.778241629880918
Merged-chr11-77680248-3	chr11	77680138	77680338	+	804.200012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-5901.0	NM_001024205	68564.0	Mm.428996	NM_001024205	ENSMUSG00000037857	Nufip2	1110001M19Rik|9530056D24Rik|AI256692|AI461731|PIG1|mKIAA1321	nuclear fragile X mental retardation protein interacting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135661513-3	chr4	135661417	135661617	+	913.305542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24940.0	NM_174851	242700.0	Mm.259623	NM_174851	ENSMUSG00000062157	Ifnlr1	CRF2-12|Il28ra	interferon lambda receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120592541-2	chr8	120592441	120592641	+	693.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3466.0	NM_178856	272551.0	Mm.275910	NM_178856	ENSMUSG00000031821	Gins2	2210013I18Rik|4833427B12Rik|AI323585|Pfs2	GINS complex subunit 2 (Psf2 homolog)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-30654359-4	chr14	30654269	30654469	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177815)	promoter-TSS (NM_177815)	-6.0	NM_177815	328370.0	Mm.259657	NM_177815	ENSMUSG00000052395	Rft1	D930025H04	RFT1 homolog	protein-coding	6.68540940124181	7.00591231317464	6.27887428451327	6.86032696679216	6.95607896514894	6.98172976412185	6.78499453043245	7.49717605717496	0.372597804944377	0.0753302553388314	0.416052558297334
Merged-chr7-98805572-4	chr7	98805470	98805670	+	992.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14|LTR|ERV1	-29542.0	NM_001285794	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-125521375-4	chr5	125521276	125521476	+	997.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11042.0	NM_001190352	208151.0	Mm.40397	NM_001190352	ENSMUSG00000070498	Tmem132b	AK220418|mKIAA1786	transmembrane protein 132B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-97138692-2	chr13	97138592	97138792	+	565.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021552)	promoter-TSS (NM_021552)	755.0	NM_001271464	320806.0	Mm.219675	NM_177266	ENSMUSG00000021666	Gfm2	6530419G12Rik|A930009M04Rik|EF-G2mt|EFG2|MST027|RRF2mt	G elongation factor, mitochondrial 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67590409-2	chr10	67590309	67590509	+	879.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18450.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-58375347-2	chr14	58375247	58375447	+	617.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	302661.0	NM_013518	14180.0	Mm.8846	NM_013518	ENSMUSG00000021974	Fgf9	Eks	fibroblast growth factor 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-29490527-4	chr17	29490433	29490633	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008842)	promoter-TSS (NM_008842)	-512.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-98321926-2	chr4	98321826	98322026	+	837.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61339.0	NM_053157	94043.0	Mm.331719	NM_053157	ENSMUSG00000028563	Tm2d1	2310026L18Rik|AA990549|Bbp	TM2 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-30176293-1	chr6	30176193	30176393	+	684.0	f0_balb.idr	promoter-TSS (NR_038124)	promoter-TSS (NR_038124)	-330.0	NR_038124	100463519.0	Mm.361139	NR_038124		BB283400	BF465573|Rncr4	expressed sequence BB283400	ncRNA	-1.28025741253843	-1.25296595648262	-1.2630259255951	-1.2712894837512	-1.0104656993792	-1.25078591920978	-1.26074856909628	-0.971423026503385	2.3133467066417	0.490836719666531	1
Merged-chr9-100503932-4	chr9	100503851	100504051	+	823.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010878, intron 2 of 3)	B1_Mm|SINE|Alu	2905.0	NM_001324530	17973.0	Mm.181485	NM_010878	ENSMUSG00000032475	Nck1	6330586M15Rik|D230010O13Rik|Nck|Nck-1	non-catalytic region of tyrosine kinase adaptor protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91986220-4	chr2	91986130	91986330	+	851.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011957, exon 10 of 12)	exon (NM_011957, exon 10 of 12)	-22667.0	NM_138306	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-148044405-2	chr4	148044305	148044505	+	717.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_027809, intron 3 of 12)	intron (NR_027809, intron 3 of 12)	3216.0	NM_001161798	17769.0	Mm.89959	NM_010840	ENSMUSG00000029009	Mthfr	AI323986	methylenetetrahydrofolate reductase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118794662-2	chr9	118794562	118794762	+	641.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 3 of 13)	intron (NM_001113514, intron 3 of 13)	82970.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-45038267-2	chr2	45038167	45038367	+	564.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355291, intron 2 of 9)	intron (NM_001355291, intron 2 of 9)	-15090.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-33109290-4	chr19	33109200	33109400	+	875.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-47812.0	NR_039552	100628575.0		NR_039552	ENSMUSG00000106278	Mir3970	mmu-mir-3970|mu-mir-3970	microRNA 3970	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-10195601-2	chr17	10195501	10195701	+	622.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	123760.0	NM_021881	19317.0	Mm.130694	NM_021881	ENSMUSG00000062078	Qk	1110003F05Rik|1500005P18|QkI|l(17)-1Wis|l17Wis1	quaking	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-60844586-2	chr18	60844486	60844686	+	898.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_011552, intron 2 of 24)	intron (NM_011552, intron 2 of 24)	4378.0	NM_011552	21453.0	Mm.486251	NM_011552	ENSMUSG00000024613	Tcof1	AA408847|AW209012|treacle	treacle ribosome biogenesis factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-32838089-2	chr18	32837989	32838189	+	567.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045381)	promoter-TSS (NR_045381)	-802.0	NR_045381	75795.0	Mm.382634	NR_045381	ENSMUSG00000097553	4930455D15Rik	-	RIKEN cDNA 4930455D15 gene	ncRNA	-2.18138529563533	-2.15523716995652	-2.1631445789866	-2.16963996020037	-2.05513010215571	-2.15352360143315	-2.16135451490766	-2.16847729006863	0.759018020146679	0.829933115115583	1
Merged-chr16-31929896-2	chr16	31929796	31929996	+	885.125	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F1|SINE|Alu	-3955.0	NM_172822	239827.0	Mm.440388	NM_172822	ENSMUSG00000045625	Pigz	F630022B06Rik	phosphatidylinositol glycan anchor biosynthesis, class Z	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43959883-4	chr4	43959788	43959988	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027450, intron 1 of 4)	intron (NM_027450, intron 1 of 4)	2186.0	NM_027450	384009.0	Mm.22213	NM_027450	ENSMUSG00000028480	Glipr2	5730414A08Rik|C77180|GAPR-1	GLI pathogenesis-related 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-15004709-2	chr5	15004609	15004809	+	606.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-25810.0	NM_001281514	100503549.0	Mm.491086	NM_001281514	ENSMUSG00000072188	Gm10354	-	predicted gene 10354	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-27860585-4	chr7	27860492	27860692	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024726)	promoter-TSS (NM_001024726)	7.0	NM_001024726	545938.0	Mm.458180	NM_001024726	ENSMUSG00000020420	Zfp607a	4732475C15Rik|Zfp607	zinc finger protein 607A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-106159935-4	chr9	106159799	106159999	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1761.0	NM_174846	235582.0	Mm.335420	NM_174846	ENSMUSG00000020258	Glyctk	6230410P16Rik|C430006L12	glycerate kinase	protein-coding	4.85389155130963	4.82305978713892	3.56091316418156	5.11477543045698	5.42289193937934	5.11644363974328	3.36106886762619	5.80165241763664	0.569438379966644	0.231039489076892	0.72553091692843
Merged-chr5-32755291-3	chr5	32755171	32755371	+	736.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177298, intron 3 of 7)	intron (NM_177298, intron 3 of 7)	-8929.0	NM_001347332	320951.0	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	-0.341184992582329	-0.325269734218016	-0.330455348626801	-0.33447490912043	-0.340183812607748	0.459662020394668	0.292825004656492	-0.333771504530607	3.83990349158385	0.127851951768966	1
Merged-chr2-32834679-4	chr2	32834558	32834758	+	820.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113569, intron 1 of 19)	intron (NM_001113569, intron 1 of 19)	12574.0	NM_009295	20910.0	Mm.278865	NM_009295	ENSMUSG00000026797	Stxbp1	AI317162|AI326233|MMS10-G|Ms10g|Munc-18a|Munc18-1|N-sec1|Rb-sec1|Sxtbp1|Unc18-1|Unc18h|nsec1	syntaxin binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46459477-3	chr19	46459355	46459555	+	748.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025391, intron 8 of 11)	intron (NM_001025391, intron 8 of 11)	-42193.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150568780-4	chr4	150568654	150568854	+	951.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 11 of 22)	intron (NM_001085492, intron 11 of 22)	83420.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-8341982-1	chr12	8341882	8342082	+	1000.0	f1_c57bl6.idr	exon (NM_021429, exon 7 of 7)	exon (NM_021429, exon 7 of 7)	28549.0	NM_021429	58240.0	Mm.309954	NM_021429	ENSMUSG00000020605	Hs1bp3	-	HCLS1 binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-5543482-3	chr11	5543398	5543598	+	851.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1281.0	NM_134033	104479.0	Mm.210403	NM_134033	ENSMUSG00000020482	Ccdc117	1110004K02Rik|1700026O03Rik|AU018638|AU042822|AV173073|BC018601	coiled-coil domain containing 117	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-87930216-4	chr3	87930121	87930321	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177663)	promoter-TSS (NM_177663)	-26.0	NM_153562	229503.0	Mm.296008	NM_153562	ENSMUSG00000004896	Rrnad1	-	ribosomal RNA adenine dimethylase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-137950643-4	chr3	137950548	137950748	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011932, intron 3 of 8)	intron (NM_011932, intron 3 of 8)	30901.0	NM_001310753	26377.0	Mm.254835	NM_011932	ENSMUSG00000028159	Dapp1	Bam32	dual adaptor for phosphotyrosine and 3-phosphoinositides 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-32511028-2	chr9	32510928	32511128	+	781.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_008026, intron 1 of 8)	intron (NM_008026, intron 1 of 8)	30424.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-10011040-2	chr7	10010940	10011140	+	585.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MMERVK10C-int|LTR|ERVK	-18901.0	NM_001105156	625605.0	Mm.484763	NM_001105156	ENSMUSG00000096180	Vmn2r49	-	vomeronasal 2, receptor 49	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-25982357-4	chr8	25982246	25982446	+	919.43335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_029037, exon 5 of 5)	3' UTR (NM_029037, exon 5 of 5)	-5602.0	NM_029884	52120.0	Mm.28326	NM_029884	ENSMUSG00000037260	Hgsnat	9430010M12Rik|AW208455|D8Ertd354e|Tmem76	heparan-alpha-glucosaminide N-acetyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-51081691-2	chr9	51081591	51081791	+	802.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177702, intron 5 of 5)	intron (NM_177702, intron 5 of 5)	-4597.0	NM_001033534	244864.0	Mm.335152	NM_001033534	ENSMUSG00000060594	Layn	E030012M19Rik|Gm511	layilin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-37197371-3	chr17	37197257	37197457	+	805.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001011518, exon 1 of 1)	exon (NM_001011518, exon 1 of 1)	609.0	NM_001011518	258219.0	Mm.377382	NM_001011518	ENSMUSG00000043827	Olfr94	MOR256-32P	olfactory receptor 94	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-67207254-4	chr17	67207159	67207359	+	815.5500490000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	147200.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	0.00272218979455416	-0.153388068425094	-0.336359180399544	-0.339137463900119	-0.208674057344047	-0.33192068270816	-0.335562645749983	0.162712595619323	0.39288844207351	0.868234232108779	1
Merged-chr15-103342627-4	chr15	103342517	103342717	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2531.0	NM_013866	29813.0	Mm.14099	NM_013866	ENSMUSG00000000552	Zfp385a	Hzf|Zfp385|Znf385a	zinc finger protein 385A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-87670400-3	chr6	87670295	87670495	+	733.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024251, intron 1 of 9)	intron (NM_024251, intron 1 of 9)	1773.0	NM_024251	72103.0	Mm.31770	NM_024251	ENSMUSG00000030051	Aplf	2010301N04Rik|AI452191	aprataxin and PNKP like factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119341104-2	chr11	119341004	119341204	+	545.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_130886, exon 19 of 22)	exon (NM_130886, exon 19 of 22)	14406.0	NM_018822	27029.0	Mm.103788	NM_018822	ENSMUSG00000005043	Sgsh	4632406A19Rik	N-sulfoglucosamine sulfohydrolase (sulfamidase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-120153721-4	chr2	120153614	120153814	+	985.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133838, intron 1 of 5)	intron (NM_133838, intron 1 of 5)	861.0	NM_133838	98878.0	Mm.132226	NM_133838	ENSMUSG00000027293	Ehd4	2210022F10Rik|AI197390|AI846352|AV006278|Past2	EH-domain containing 4	protein-coding	3.03746996144055	2.87155336792818	2.87834875607564	2.34375037115352	2.92508643428408	2.34522585203766	2.68793699319755	2.81401114608968	-0.183523839835544	0.793739455856644	0.998431161219273
Merged-chr4-155249418-4	chr4	155249275	155249475	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001190445)	promoter-TSS (NM_001190445)	-591.0	NM_001190445	67513.0	Mm.10374	NM_001190445	ENSMUSG00000073684	Faap20	2610002J02Rik	Fanconi anemia core complex associated protein 20	protein-coding	2.457692839382	2.12404613833243	1.19073995478154	1.64634910710803	1.56767806510499	0.975439923353853	1.3997074799573	0.934396527064915	-2.20176014406317	0.071680955051309	0.403516467956962
Merged-chr6-71629093-2	chr6	71628993	71629193	+	775.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001362200, intron 2 of 25)	intron (NM_001362200, intron 2 of 25)	3593.0	NM_173001	104263.0	Mm.260479	NM_173001	ENSMUSG00000053470	Kdm3a	1700105C21Rik|C230043E16Rik|JHDM2a|Jmjd1|Jmjd1a|KDM2A|TGSA|Tsga	lysine (K)-specific demethylase 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-119422341-4	chr4	119422223	119422423	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355214)	promoter-TSS (NM_001355214)	97.0	NM_001355214	106564.0	Mm.27245	NM_026494	ENSMUSG00000028636	Ppcs	6330579B17Rik|AI413471|AI790434	phosphopantothenoylcysteine synthetase	protein-coding	-1.84371485578039	-1.81332821174849	-1.82251738371298	-1.83006564316449	-1.84158176955426	-1.81133687985023	-1.5312619047181	-1.82871450833159	1.60090129203521	0.64914985597185	1
Merged-chr8-77442630-4	chr8	77442512	77442712	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030113, intron 3 of 22)	intron (NM_030113, intron 3 of 22)	-74444.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-58148596-3	chr13	58148485	58148685	+	686.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_126543, exon 2 of 2)	non-coding (NR_126543, exon 2 of 2)	1636.0	NR_126543	67339.0	Mm.121929	NR_126543	ENSMUSG00000097717	1700066J03Rik	-	RIKEN cDNA 1700066J03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-33310991-6	chr4	33310951	33311151	+	778.0888669999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305273, intron 1 of 15)	intron (NM_001305273, intron 1 of 15)	740.0	NM_001305273	24018.0	Mm.240024	NM_011884	ENSMUSG00000028274	Rngtt	AU020997|HCE|MCE1	RNA guanylyltransferase and 5'-phosphatase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-22474812-4	chr6	22474698	22474898	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-118717.0	NM_138587	27999.0	Mm.490307	NM_138587	ENSMUSG00000029672	Fam3c	D6Wsu176e|Ilei	family with sequence similarity 3, member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-123267383-4	chr3	123267248	123267448	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027135)	promoter-TSS (NM_027135)	-148.0	NM_027135	69608.0	Mm.29293	NM_027135	ENSMUSG00000039234	Sec24d	2310020L09Rik|Gm1349	Sec24 related gene family, member D (S. cerevisiae)	protein-coding	6.79849603269207	6.54101510152816	6.56818123959403	6.5497230776786	6.14263871315814	6.51089243340883	6.29047038322739	5.94828938046163	-0.420819756317279	0.0410239639921069	0.288919783065845
Merged-chr10-75434840-2	chr10	75434740	75434940	+	598.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133995, intron 6 of 9)	intron (NM_133995, intron 6 of 9)	-14670.0	NR_045841	71125.0	Mm.399516	NR_045841		4933407G14Rik	-	RIKEN cDNA 4933407G14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-91384492-4	chr12	91384396	91384596	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181815)	promoter-TSS (NM_181815)	-87.0	NM_181815	75216.0	Mm.312204	NM_181815	ENSMUSG00000061533	Cep128	4930534B04Rik|5430424K18Rik|AI449708|AI480494|E230024F20	centrosomal protein 128	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-79392311-4	chr7	79392201	79392401	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145946)	promoter-TSS (NM_145946)	-37.0	NM_145946	208836.0	Mm.349493	NM_145946	ENSMUSG00000039187	Fanci	-	Fanconi anemia, complementation group I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-32363996-1	chr17	32363896	32364096	+	677.0	f0_c57.idr	intron (NR_033525, intron 4 of 10)	intron (NR_033525, intron 4 of 10)	-13419.0	NM_017476	54194.0	Mm.281005	NM_017476	ENSMUSG00000002625	Akap8l	HAP95|Nakap95	A kinase (PRKA) anchor protein 8-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-45955244-4	chr9	45955169	45955369	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172257)	promoter-TSS (NM_172257)	-20.0	NM_172257	214597.0	Mm.379345	NM_172257	ENSMUSG00000034908	Sidt2	B930096O19|BC023957|CGI-40	SID1 transmembrane family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-97775936-4	chr3	97775785	97775985	+	959.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039376, intron 8 of 46)	intron (NM_001039376, intron 8 of 46)	-7871.0	NR_110360	83679.0	Mm.129840	NM_031401	ENSMUSG00000038170	Pde4dip	4732458A06Rik|9430063L05Rik|C87016|D130016K21Rik|D3Bwg1078e|Usmg4|mKIAA0454	phosphodiesterase 4D interacting protein (myomegalin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-86489514-2	chr1	86489414	86489614	+	694.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-37043.0	NR_153834	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-86129994-4	chr5	86129923	86130123	+	996.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172712, intron 23 of 32)	intron (NM_172712, intron 23 of 32)	42720.0	NM_172712	231380.0	Mm.34012	NM_172712	ENSMUSG00000035898	Uba6	4930542H01|5730469D23Rik|AU021846|AW124799|E1-L2|Ube1l2	ubiquitin-like modifier activating enzyme 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-88131973-3	chr11	88131802	88132002	+	665.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198013, intron 1 of 10)	intron (NM_198013, intron 1 of 10)	32756.0	NM_198013	103841.0	Mm.374846	NM_198013	ENSMUSG00000018378	Cuedc1	AI841487|C330016O16Rik	CUE domain containing 1	protein-coding	1.0524296652807	1.14628295358513	2.16989512889994	2.10344791825947	2.19553868553909	1.15270438122459	2.72135545643994	2.31639068028398	1.1904440629754	0.306028415769926	0.806865344318695
Merged-chr8-105701141-4	chr8	105701034	105701234	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001348349)	promoter-TSS (NM_001348349)	-14.0	NM_001047436	56513.0	Mm.472753	NM_019695	ENSMUSG00000005699	Pard6a	0710008C04Rik|2610010A15Rik|PAR-6A|PAR6alpha|Par-6|Par6|Par6c|TAX40|Tip-40	par-6 family cell polarity regulator alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-31139229-4	chr3	31139115	31139315	+	816.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10705.0	NM_008770	18417.0	Mm.4425	NM_008770	ENSMUSG00000037625	Cldn11	Claudin-11|Claudin11|Osp|Otm	claudin 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-125995069-4	chr10	125994979	125995179	+	983.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177152, intron 4 of 18)	ORR1E|LTR|ERVL-MaLR	28860.0	NM_177152	320398.0	Mm.275586	NM_177152	ENSMUSG00000020105	Lrig3	9030421L11Rik|9130004I02Rik|9430095K15Rik|mKIAA3016	leucine-rich repeats and immunoglobulin-like domains 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-96777687-4	chr11	96777585	96777785	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163389)	promoter-TSS (NM_001163389)	-130.0	NM_001163389	74479.0	Mm.270781	NM_028965	ENSMUSG00000020876	Snx11	4933439F10Rik|A930041K09Rik|AI117694	sorting nexin 11	protein-coding	6.71728512519145	6.40655372506182	6.69879983740386	6.49013241088839	7.0139792403256	6.32888902872846	7.08531860599736	7.16458972079018	0.374760743237141	0.0701941419750279	0.398668891361662
Merged-chr1-189883210-2	chr1	189883110	189883310	+	789.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026796, intron 10 of 11)	intron (NM_026796, intron 10 of 11)	39081.0	NM_026796	226830.0	Mm.156895	NM_026796	ENSMUSG00000026603	Smyd2	1110020E07Rik|4930402C15|KMT3C|Zmynd14	SET and MYND domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36598524-2	chr1	36598410	36598610	+	707.5	f0_balb.idr|f0_c57.idr	intron (NM_001126046, intron 10 of 14)	intron (NM_001126046, intron 10 of 14)	-5178.0	NM_027957	381337.0	Mm.17413	NM_027957	ENSMUSG00000046337	Fam178b	1700024G10Rik|Gm990	family with sequence similarity 178, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-148580729-3	chr2	148580597	148580797	+	881.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-91918.0	NM_019761	56488.0	Mm.34663	NM_019761	ENSMUSG00000036992	Nxt1	1110001N02Rik	NTF2-related export protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-67376237-4	chr6	67376142	67376342	+	949.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008354)	promoter-TSS (NM_008354)	-54.0	NM_008354	16162.0	Mm.188337	NM_008354	ENSMUSG00000018341	Il12rb2	A930027I18Rik|IL-12RB2|Ifnm	interleukin 12 receptor, beta 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-27228621-4	chr7	27228537	27228737	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181593)	promoter-TSS (NM_181593)	-40.0	NM_181593	233011.0	Mm.30963	NM_181593	ENSMUSG00000003752	Itpkc	9130023N17Rik	inositol 1,4,5-trisphosphate 3-kinase C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-109463791-2	chr8	109463691	109463891	+	598.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30236.0	NM_019938	56523.0	Mm.42166	NM_019938	ENSMUSG00000031727	Pmfbp1	1700016D22Rik|F77|Stap	polyamine modulated factor 1 binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-80450152-2	chr17	80450052	80450252	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009231, intron 5 of 21)	intron (NM_009231, intron 5 of 21)	30301.0	NM_009231	20662.0	Mm.60975	NM_009231	ENSMUSG00000024241	Sos1	4430401P03Rik|9630010N06|AI449023	SOS Ras/Rac guanine nucleotide exchange factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-143602290-4	chr5	143602191	143602391	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20156.0	NM_011182	19159.0	Mm.281003	NM_011182	ENSMUSG00000018001	Cyth3	AI648983|ARNO3|CLM3|Grp1|Pscd3	cytohesin 3	protein-coding	4.31779420753298	4.65705994413981	5.12256715194274	4.48951545624442	4.10123239300462	4.63525334453866	5.12377326129018	4.95400487034317	0.0932322221763796	0.808318408225635	0.998431161219273
Merged-chr17-43166334-1	chr17	43166234	43166434	+	663.5	f0_balb.idr	Intergenic	MTD|LTR|ERVL-MaLR	-8043.0	NR_045153	545207.0	Mm.329050	NR_045153		E130008D07Rik	-	RIKEN cDNA E130008D07 gene	ncRNA	0.830116804593149	1.50817504120531	0.870035814111139	0.855334989147947	1.34066608086095	1.91436398053068	1.94049644861215	1.87105881872459	2.89760112141027	0.0339766294821796	0.259768684531101
Merged-chr17-33563932-4	chr17	33563850	33564050	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053214, intron 1 of 27)	L3b|LINE|CR1	8243.0	NM_053214	17916.0	Mm.42019	NM_053214	ENSMUSG00000024300	Myo1f	C330006B10Rik	myosin IF	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-88264445-2	chr1	88264345	88264545	+	957.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_172505)	TTS (NM_172505)	4963.0	NR_040291	78605.0	Mm.384762	NR_040291		6430706D22Rik	-	RIKEN cDNA 6430706D22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83302690-4	chr11	83302556	83302756	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001035854)	promoter-TSS (NM_001035854)	-41.0	NM_027915	71770.0	Mm.39053	NM_027915	ENSMUSG00000035152	Ap2b1	1300012O03Rik|AI788979|AP105B	adaptor-related protein complex 2, beta 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-97544456-4	chr13	97544353	97544553	+	873.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15547.0	NR_046157	328314.0	Mm.138047	NR_046157	ENSMUSG00000110235	Gm5086	B230311A21|EG328314	predicted gene 5086	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126829577-2	chr8	126829477	126829677	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19443.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-23840779-3	chr10	23840680	23840880	+	891.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10682.0	NM_011979	26464.0	Mm.27334	NM_011979	ENSMUSG00000020010	Vnn3	-	vanin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-50512411-4	chr17	50512300	50512500	+	882.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013880, intron 1 of 5)	intron (NM_013880, intron 1 of 5)	2853.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	-0.238794932023934	0.79338556730734	-0.225475686830959	-0.230448180250678	-0.237545824959202	-0.217659572917129	-0.224061603924655	0.384635387640427	-1.0764438285379	0.661720322156576	1
Merged-chr8-70755194-4	chr8	70755087	70755287	+	958.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166399, intron 1 of 4)	CpG	508.0	NM_001166399	19339.0	Mm.5083	NM_009001	ENSMUSG00000031840	Rab3a	-	RAB3A, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-161976604-4	chr1	161976500	161976700	+	966.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001204904, intron 1 of 6)	intron (NM_001204904, intron 1 of 6)	3036.0	NM_001204904	75368.0	Mm.108728	NM_001204904	ENSMUSG00000086277	4930558K02Rik	-	RIKEN cDNA 4930558K02 gene	protein-coding	4.63952416212995	4.42856431575563	4.87258893412096	5.4368706036646	4.35154585959338	4.02020541414184	5.02037915823317	4.64781555160422	-0.419606471457666	0.281771895253468	0.784516344917368
Merged-chr7-84089168-1	chr7	84089068	84089268	+	543.0	f0_balb.idr	Intergenic	Intergenic	-2663.0	NM_030728	80982.0	Mm.160389	NM_030728	ENSMUSG00000052353	Cemip	12H19.01.T7|6330404C01Rik|9930013L23Rik|AY007814|Kiaa1199	cell migration inducing protein, hyaluronan binding	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-72836096-4	chr8	72835975	72836175	+	953.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001317391, intron 13 of 15)	intron (NM_001317391, intron 13 of 15)	74416.0	NM_007975	14065.0	Mm.12948	NM_007975	ENSMUSG00000050147	F2rl3	PAR4	coagulation factor II (thrombin) receptor-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-85750009-2	chr9	85749909	85750109	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081282)	promoter-TSS (NM_001081282)	-675.0	NM_175371	108837.0	Mm.22315	NM_175371	ENSMUSG00000035941	Ibtk	5430411K16Rik|AA409502|BTKI|mKIAA1417	inhibitor of Bruton agammaglobulinemia tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-127453254-1	chr2	127453154	127453354	+	561.0	f1_c57bl6.idr	Intergenic	Intergenic	-8689.0	NM_029629	68126.0	Mm.288676	NM_029629	ENSMUSG00000027371	Fahd2a	1500003K14Rik|B430104H02Rik|Cgi-105|Fahd2	fumarylacetoacetate hydrolase domain containing 2A	protein-coding	1.70395384178309	2.34014114730144	1.42966212084777	1.38983030663759	0.95528729555058	1.8172514379568	1.0025824997308	2.11249757710121	-0.562075025512836	0.643130194624515	0.982823301118608
Merged-chr10-80928687-4	chr10	80928552	80928752	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1439.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-58734337-4	chr15	58734249	58734449	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	89078.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-35764846-4	chr3	35764750	35764950	+	927.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151627, intron 1 of 31)	intron (NR_151627, intron 1 of 31)	10787.0	NM_029570	76295.0	Mm.239416	NM_029570	ENSMUSG00000037400	Atp11b	1110019I14Rik|ATPIF|ATPIR|mKIAA0956	ATPase, class VI, type 11B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-38954844-3	chr6	38954765	38954965	+	774.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 3 of 12)	(CACCAT)n|Simple_repeat|Simple_repeat	35879.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-76366969-2	chr16	76366869	76367069	+	622.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_173440, intron 1 of 3)	intron (NM_173440, intron 1 of 3)	6080.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-88118946-4	chr17	88118860	88119060	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6552.0	NM_001190356	225058.0	Mm.312053	NM_001190356		Gm4832	EG225058	predicted gene 4832	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-125270417-4	chr10	125270326	125270526	+	878.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358496, intron 3 of 5)	intron (NM_001358496, intron 3 of 5)	38390.0	NM_001358915	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132959027-2	chr4	132958927	132959127	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15068.0	NM_010208	14191.0	Mm.271665	NM_010208	ENSMUSG00000028874	Fgr	-	FGR proto-oncogene, Src family tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-29047399-1	chr19	29047299	29047499	+	877.0	f0_balb.idr	promoter-TSS (NR_028360)	promoter-TSS (NR_028360)	-84.0	NR_028360	67329.0	Mm.394933	NR_028360		1700018L02Rik	-	RIKEN cDNA 1700018L02 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-84531835-3	chr2	84531736	84531936	+	999.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	-24963.0	NR_046046	672763.0	Mm.491046	NR_046046	ENSMUSG00000087362	Gm13710	-	predicted gene 13710	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-121710286-4	chr9	121710184	121710384	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026794)	promoter-TSS (NM_026794)	-105.0	NM_026794	26901.0	Mm.24848	NM_026794	ENSMUSG00000032526	Ss18l2	1110020I04Rik|AI463209|Deb1	SS18, nBAF chromatin remodeling complex subunit like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-119142396-4	chr4	119142294	119142494	+	974.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	31462.0	NM_001145935	195522.0	Mm.169620	NM_183140	ENSMUSG00000045268	Zfp691	6430544H17Rik|Znf691	zinc finger protein 691	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-33503042-4	chr1	33502961	33503161	+	979.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008922, intron 10 of 13)	intron (NM_008922, intron 10 of 13)	166733.0	NM_008922	19076.0	Mm.27705	NM_008922	ENSMUSG00000026134	Prim2	AI323589	DNA primase, p58 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-105723779-2	chr3	105723679	105723879	+	736.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18321.0	NM_001163356	109050.0	Mm.212591	NM_175398	ENSMUSG00000048458	Fam212b	6530418L21Rik|inka2	family with sequence similarity 212, member B	protein-coding	-0.356476364334238	-0.00027765924860701	-0.489361833128438	-0.492230238304679	-0.496275053088451	0.00893465027867191	-0.488540917762579	-0.491729497877821	-0.270522364052869	0.917168158447674	1
Merged-chr3-144203416-3	chr3	144203315	144203515	+	676.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010723, intron 1 of 4)	intron (NM_010723, intron 1 of 4)	-1019.0	NM_001161769	16911.0	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-44917382-2	chr13	44917217	44917417	+	627.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205043, intron 17 of 17)	intron (NM_001205043, intron 17 of 17)	84779.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-118767745-3	chr13	118767639	118767839	+	729.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008002, intron 1 of 2)	intron (NM_008002, intron 1 of 2)	53040.0	NM_008002	14165.0	Mm.317323	NM_008002	ENSMUSG00000021732	Fgf10	AEY17|BB213776|Fgf-10|Gsfaey17	fibroblast growth factor 10	protein-coding	1.58837725954444	2.75348754381848	2.45841143351956	2.01487306689465	1.77268545920528	1.27837149223171	3.29354812511425	1.86925814482797	0.0971483706630685	0.922002745696391	0.998431161219273
Merged-chr11-50377625-4	chr11	50377515	50377715	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021510)	promoter-TSS (NM_021510)	-104.0	NM_021510	59013.0	Mm.21740	NM_021510	ENSMUSG00000007850	Hnrnph1	AI642080|E430005G16Rik|Hnrnph|Hnrph1	heterogeneous nuclear ribonucleoprotein H1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129672617-5	chr4	129672459	129672659	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008468, intron 1 of 13)	CpG	208.0	NM_008468	16650.0	Mm.202358	NM_008468	ENSMUSG00000003731	Kpna6	IPOA7|Kpna5|NPI-2	karyopherin (importin) alpha 6	protein-coding	4.42549711568648	2.85643245128429	4.07868105665202	4.44820210045343	3.74592511957425	3.53902352707476	4.04818998871017	3.40460383430294	-0.544763852564459	0.294247900608368	0.798191705447
Merged-chr3-96251332-4	chr3	96251251	96251451	+	950.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4651.0	NM_054045	97114.0	Mm.358797	NM_054045	ENSMUSG00000081058	Hist2h3c2	H3-614|H3.2-614|Hist2h3c2-ps|Hist2h3ca1|M32461	histone cluster 2, H3c2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3908915-2	chr19	3908815	3909015	+	716.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_144870)	TTS (NM_144870)	-1782.0	NM_001136091	27060.0	Mm.271689	NM_016921	ENSMUSG00000001750	Tcirg1	ATP6N1C|ATP6a3|Atp6i|OC-116|OPTB1|Stv1|TIRC7|Vph1|oc	T cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 protein A3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-82773731-3	chr8	82773629	82773829	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145600, intron 1 of 9)	intron (NM_145600, intron 1 of 9)	397.0	NM_145600	30932.0	Mm.269248	NM_145600	ENSMUSG00000031711	Zfp330	BC008086|Noa36|Znf330	zinc finger protein 330	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-69184287-4	chr8	69184186	69184386	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24760.0	NM_001013379	234358.0	Mm.334577	NM_001013379	ENSMUSG00000059897	Zfp930	-	zinc finger protein 930	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-22547809-4	chr16	22547715	22547915	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346673, intron 19 of 23)	intron (NM_001346673, intron 19 of 23)	-15631.0	NR_106170	102465887.0		NR_106170	ENSMUSG00000099071	Mir8095	Gm27566|mmu-mir-8095	microRNA 8095	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-17132531-1	chr19	17132431	17132631	+	590.0	f1_balb.idr	intron (NM_181348, intron 9 of 19)	intron (NM_181348, intron 9 of 19)	176413.0	NM_181348	353211.0	Mm.257354	NM_181348	ENSMUSG00000039126	Prune2	6330414G02Rik|A230083H22Rik|A330102H22Rik|Bmcc1|mKIAA0367	prune homolog 2	protein-coding	-0.381534712270828	-0.367743029701211	-0.372254425981719	-0.37573968752492	0.206881371801117	-0.366727000965275	0.32919362941858	-0.375130526097395	3.71399911208044	0.152111135589846	1
Merged-chr14-62243424-4	chr14	62243342	62243542	+	874.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49537.0	NM_173419	239133.0	Mm.127330	NM_173419	ENSMUSG00000048281	Dleu7	BC038059	deleted in lymphocytic leukemia, 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101339699-3	chr15	101339599	101339799	+	847.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29653.0	NR_035462	100316694.0		NR_035462	ENSMUSG00000088459	Mir1941	mmu-mir-1941	microRNA 1941	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35969887-4	chr17	35969805	35970005	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013854)	promoter-TSS (NM_013854)	-155.0	NM_013854	224742.0	Mm.329022	NM_013854	ENSMUSG00000038762	Abcf1	AU041969|Abc50|D17Wsu166e|GCN20	ATP-binding cassette, sub-family F (GCN20), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-94074529-4	chr11	94074398	94074598	+	876.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025430, intron 5 of 25)	Lx8|LINE|L1	30293.0	NM_001025429	70834.0	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	2.42470517604989	1.4289362175663	2.62825244668806	2.11392715463926	2.44472116749087	2.83237442097515	2.44316047912941	1.97873535765886	0.508321396947053	0.564496470728646	0.960753698599198
Merged-chr10-10130593-2	chr10	10130493	10130693	+	602.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-229553.0	NM_001081344	78808.0	Mm.331751	NM_030191	ENSMUSG00000019790	Stxbp5	0710001E20Rik|4930565N16Rik|AW742610|LGL3|mKIAA1006	syntaxin binding protein 5 (tomosyn)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-136035268-4	chr4	136035193	136035393	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-13644.0	NM_013736	27224.0	Mm.27663	NM_013736	ENSMUSG00000028668	Eloa	110kDa|AA408125|Tceb3|Tceb3a	elongin A	protein-coding	4.85449665442599	4.83824227661613	3.75386079500034	4.32617230395932	4.62577402613026	4.77657278840246	5.07575191410064	4.63505256182206	0.336899150131341	0.381667207225874	0.872879327710422
Merged-chr7-97400451-2	chr7	97400351	97400551	+	732.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_024220, intron 1 of 2)	intron (NM_024220, intron 1 of 2)	448.0	NM_024220	68197.0	Mm.334031	NM_024220	ENSMUSG00000030647	Ndufc2	1810004I06Rik|2010300P09Rik|G1|R75094	NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-54990444-6	chr18	54990418	54990618	+	990.194458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175751)	promoter-TSS (NM_175751)	-338.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-31060823-4	chr17	31060713	31060913	+	999.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009593, intron 1 of 14)	intron (NM_009593, intron 1 of 14)	3119.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-20313560-2	chr10	20313460	20313660	+	848.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025392, intron 1 of 12)	intron (NM_001025392, intron 1 of 12)	1091.0	NM_001025393	72567.0	Mm.294783	NM_153787	ENSMUSG00000037608	Bclaf1	2610102K23Rik|2700025J07Rik|2810454G14Rik|5730534O06Rik|AI450190|AW556225|Btf|mKIAA0164	BCL2-associated transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-99522153-4	chr6	99522052	99522252	+	940.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG-12329	-1159.0	NM_001347345	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-40031539-4	chr8	40031468	40031668	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	255385.0	NM_030610	80857.0	Mm.425526	NM_030610	ENSMUSG00000031603	Fgf20	-	fibroblast growth factor 20	protein-coding	4.64878215612819	2.90820804585408	5.07822155047384	3.78036826338883	4.27816727927119	3.49681823255765	3.84472051341527	4.7876687766094	-0.195196882345946	0.71709497575022	0.998431161219273
Merged-chr5-25526189-3	chr5	25526046	25526246	+	794.133301	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3872.0	NR_027388	73571.0	Mm.105263	NR_027388	ENSMUSG00000101856	1700096K18Rik	-	RIKEN cDNA 1700096K18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-120287004-2	chr4	120286904	120287104	+	740.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_194060, exon 1 of 2)	exon (NM_194060, exon 1 of 2)	257.0	NM_194060	329934.0	Mm.277090	NM_194060	ENSMUSG00000052135	Foxo6	-	forkhead box O6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97392962-2	chr6	97392862	97393062	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 6 of 23)	RCHARR1|DNA|hAT-Charlie	66324.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-19163170-4	chr3	19163072	19163272	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028840)	promoter-TSS (NM_028840)	-77.0	NM_001357689	74252.0	Mm.200383	NM_028840	ENSMUSG00000027599	Armc1	2310016N05Rik|2900046P06Rik|3110009G21Rik|AA409258|AW048872|Arcp|C330014L16Rik	armadillo repeat containing 1	protein-coding	5.44187590171604	4.79396878712498	3.6922690384787	4.47050617153464	5.16091584328131	4.96701676751415	5.35364219063068	5.05877591252758	0.466908557150972	0.228623021180243	0.721861600842291
Merged-chr12-100007566-2	chr12	100007466	100007666	+	792.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164426, intron 2 of 2)	intron (NM_001164426, intron 2 of 2)	43067.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-22368263-5	chr9	22368132	22368332	+	773.366699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028390, intron 8 of 23)	intron (NM_028390, intron 8 of 23)	20974.0	NM_028390	68743.0	Mm.282751	NM_028390	ENSMUSG00000036777	Anln	1110037A17Rik|2900037I21Rik|C78101|Scraps	anillin, actin binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-34139883-2	chr5	34139783	34139983	+	768.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289803, intron 2 of 23)	intron (NM_001289803, intron 2 of 23)	21143.0	NR_040703	75357.0	Mm.410806	NR_040703	ENSMUSG00000106902	4930557J02Rik	-	RIKEN cDNA 4930557J02 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-156237161-3	chr4	156237080	156237280	+	897.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021303, intron 2 of 18)	CpG-10794	1170.0	NM_021303	57741.0	Mm.423051	NM_021303	ENSMUSG00000095567	Noc2l	AA410003|AF155546|NIR	NOC2 like nucleolar associated transcriptional repressor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-40113355-2	chr1	40113255	40113455	+	948.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010555, intron 4 of 8)	intron (NM_010555, intron 4 of 8)	27262.0	NM_001360800	16178.0	Mm.1349	NM_010555	ENSMUSG00000026073	Il1r2	CD121b|Il1r-2	interleukin 1 receptor, type II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3080894-1	chr4	3080794	3080994	+	657.0	f1_balb.idr	Intergenic	Intergenic	-91189.0	NM_001167534	100312470.0	Mm.480297	NM_001167534	ENSMUSG00000115072	Vmn1r2	Gm11776	vomeronasal 1 receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-132011010-5	chr1	132010873	132011073	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007923, intron 1 of 4)	L1MB8|LINE|L1	3368.0	NM_007923	13714.0	Mm.254233	NM_007923	ENSMUSG00000026436	Elk4	2310011G17Rik|A130026I01Rik|BB162516|SAP-1|Sap1	ELK4, member of ETS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-31082022-2	chr6	31081922	31082122	+	925.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18929.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-75964645-4	chr2	75964545	75964745	+	959.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13534.0	NM_001081228	620631.0	Mm.389286	NM_001081228	ENSMUSG00000075272	Ttc30a2	-	tetratricopeptide repeat domain 30A2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-44835287-4	chr14	44835181	44835381	+	846.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24094.0	NM_008962	19214.0	Mm.5105	NM_008962	ENSMUSG00000071489	Ptgdr	DP|PGD	prostaglandin D receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-47467221-2	chr19	47467121	47467321	+	871.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-2810.0	NM_008018	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	-0.885343988398316	-0.873197811915141	-0.879568534556306	-0.464008891048743	-0.884809499207366	-0.870535133016439	-0.878945546113603	-0.458408536970068	0.0285539633070526	0.992673327504828	1
Merged-chr1-135531908-2	chr1	135531808	135532008	+	551.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_173437, intron 3 of 28)	intron (NM_173437, intron 3 of 28)	53447.0	NM_173437	215690.0	Mm.34977	NM_173437	ENSMUSG00000009418	Nav1	9530089B19|9930003A20Rik|C230080M11Rik|Gm38399|Pomfil3|Unc53h1|mKIAA1151|steerin-1	neuron navigator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-49042507-2	chr13	49042407	49042607	+	940.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290313, intron 28 of 29)	intron (NM_001290313, intron 28 of 29)	74395.0	NR_015601	68128.0	Mm.426304	NR_015601		Fam120aos	C030044B11Rik	family with sequence similarity 120A, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132462480-2	chr4	132462380	132462580	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026039, intron 2 of 2)	B1_Mur4|SINE|Alu	1441.0	NM_026039	67219.0	Mm.45929	NM_026039	ENSMUSG00000066042	Med18	2810046C01Rik	mediator complex subunit 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-60523481-4	chr18	60523386	60523586	+	954.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2668.0	NM_026302	67665.0	Mm.272801	NM_026302	ENSMUSG00000024603	Dctn4	1110001K06Rik|4930547K17Rik|C130039E17Rik|p62	dynactin 4	protein-coding	4.08988849558754	3.92978822966599	3.071722418759	5.25902463179431	6.00917815348317	5.9743281191386	6.55252241088883	5.68876067713841	2.04238683251808	2.6551513795902e-07	2.10505547922841e-05
Merged-chr12-12274410-2	chr12	12274310	12274510	+	614.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001146119, intron 1 of 11)	intron (NM_001146119, intron 1 of 11)	12271.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-155598925-2	chr4	155598825	155599025	+	920.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR42-int|LTR|ERVK	-2491.0	NM_177186	320541.0	Mm.306018	NM_177186	ENSMUSG00000042202	Slc35e2	A530082C11Rik|AI957035	solute carrier family 35, member E2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-102142189-1	chr7	102142089	102142289	+	688.0	f0_balb.idr	intron (NM_001287164, intron 20 of 32)	intron (NM_001287164, intron 20 of 32)	-25476.0	NM_001081424	504186.0	Mm.334074	NM_001081424	ENSMUSG00000066279	Chrna10	-	cholinergic receptor, nicotinic, alpha polypeptide 10	protein-coding	0.112519002034478	-0.274400049287004	-0.277437335936612	-0.279754512958644	-0.0547891381796449	0.0338674573797808	-0.12456013279143	-0.279351351274237	0.639339744840901	0.785414564311873	1
Merged-chr8-70645411-4	chr8	70645307	70645507	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12951.0	NM_001330687	23886.0	Mm.31325	NM_011819	ENSMUSG00000038508	Gdf15	MIC-1|NAG-1|SBF	growth differentiation factor 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-26647329-1	chr14	26647229	26647429	+	596.0	f1_c57bl6.idr	intron (NM_007479, intron 3 of 5)	PB1D9|SINE|Alu	9195.0	NM_007479	11843.0	Mm.297768	NM_007479	ENSMUSG00000021877	Arf4	AA407803	ADP-ribosylation factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-33263212-4	chr6	33263104	33263304	+	912.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347089, intron 1 of 9)	B1F|SINE|Alu	14076.0	NM_001347089	20336.0	Mm.265512	NM_009148	ENSMUSG00000029763	Exoc4	C78892|Sec8|Sec8l1	exocyst complex component 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-102290453-3	chr4	102290367	102290567	+	804.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177983, intron 1 of 5)	intron (NM_001177983, intron 1 of 5)	35528.0	NM_019840	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-107015235-2	chr11	107015135	107015335	+	982.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12988.0	NM_001163473	69066.0	Mm.40679	NM_001163473	ENSMUSG00000078607	1810010H24Rik	-	RIKEN cDNA 1810010H24 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-118112746-1	chr7	118112646	118112846	+	598.0	f1_balb.idr	intron (NM_170669, intron 3 of 4)	ORR1A2-int|LTR|ERVL-MaLR	3401.0	NM_170669	267019.0	Mm.288212	NM_170669	ENSMUSG00000008683	Rps15a	A630031B11Rik	ribosomal protein S15A	protein-coding	-0.205188508098496	0.82200805360957	-0.191720743534109	-0.196749596388646	0.44402344230359	-0.183813786396171	-0.190290431044277	-0.195868172578672	-0.974359318173561	0.689634807533675	1
Merged-chr17-35092618-2	chr17	35092519	35092719	+	677.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178592, intron 4 of 19)	B3|SINE|B2	3328.0	NM_178592	193742.0	Mm.43745	NM_178592	ENSMUSG00000007036	Abhd16a	AI326074|Bat-5|Bat5|D17H6S82E|NG26	abhydrolase domain containing 16A	protein-coding	1.07725417286704	0.609597851164134	1.07415792833883	1.03788899301452	1.26523126967822	1.13048741070346	0.602428117381905	0.594499515570483	-0.106143220616337	0.946696396710574	1
Merged-chr6-65042160-2	chr6	65042060	65042260	+	998.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355250)	promoter-TSS (NM_001355250)	-431.0	NM_001355250	13990.0	Mm.99113	NM_007958	ENSMUSG00000029920	Smarcad1	AV081750|AW226546|D6Pas1|Etl1|etl-1|mKIAA1122	SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46953617-3	chr8	46953517	46953717	+	876.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33270.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-4147122-2	chr7	4147022	4147222	+	686.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172736, exon 15 of 15)	3' UTR (NM_172736, exon 15 of 15)	2750.0	NM_175529	243813.0	Mm.347643	NM_175529	ENSMUSG00000043432	Leng9	9530024C23Rik|F630035L11Rik	leukocyte receptor cluster (LRC) member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-118122499-2	chr3	118122399	118122599	+	629.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4B|LINE|L1	-253563.0	NM_029655	76561.0	Mm.33824	NM_029655	ENSMUSG00000028007	Snx7	2510028H01Rik	sorting nexin 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-87303700-4	chr17	87303592	87303792	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028639, intron 3 of 19)	intron (NM_028639, intron 3 of 19)	20806.0	NM_028639	225049.0	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-148945270-7	chr6	148945182	148945382	+	918.780945	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355645)	promoter-TSS (NM_001355645)	425.0	NR_144294	109163.0	Mm.440359	NM_175404		3010003L21Rik	-	RIKEN cDNA 3010003L21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-139015303-3	chr1	139015205	139015405	+	769.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181347, intron 1 of 20)	intron (NM_181347, intron 1 of 20)	37648.0	NR_108103	78229.0	Mm.437838	NR_108103	ENSMUSG00000104900	4930596I21Rik	-	RIKEN cDNA 4930596I21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4745577-2	chr16	4745477	4745677	+	618.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_010443, intron 1 of 5)	IAPEz-int|LTR|ERVK	3964.0	NM_010443	15369.0	Mm.272866	NM_010443	ENSMUSG00000004070	Hmox2	HO-2|HO2	heme oxygenase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-92530778-4	chr13	92530636	92530836	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173392)	promoter-TSS (NM_173392)	74.0	NM_173392	218441.0	Mm.259585	NM_173392	ENSMUSG00000021706	Zfyve16	AI035632|B130024H06Rik|B130031L15|mKIAA0305	zinc finger, FYVE domain containing 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98783490-4	chr11	98783421	98783621	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8144.0	NM_145434	217166.0	Mm.390397	NM_145434	ENSMUSG00000020889	Nr1d1	A530070C09Rik|R75201	nuclear receptor subfamily 1, group D, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139377658-4	chr5	139377549	139377749	+	890.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033147)	promoter-TSS (NR_033147)	-48.0	NM_001362206	80290.0	Mm.270003	NM_030258	ENSMUSG00000044197	Gpr146	BC003323|D830046C22Rik|PGR8	G protein-coupled receptor 146	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-44759843-4	chr18	44759733	44759933	+	947.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085373, intron 1 of 18)	intron (NM_001085373, intron 1 of 18)	52349.0	NM_001085373	328949.0	Mm.312511	NM_001033406	ENSMUSG00000071856	Mcc	D18Ertd451e|E330037C19	mutated in colorectal cancers	protein-coding	2.38331217680895	1.90920046198182	2.50785583595205	1.23367832552372	1.96817352221902	1.74806525588842	2.13212184448626	1.94479815991528	-0.406573197325799	0.683049101634637	0.995882295196263
Merged-chr7-42980314-4	chr7	42980201	42980401	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPLTR3-int|LTR|ERVK	-38497.0	NM_001105061	668612.0	Mm.469896	NM_001105061	ENSMUSG00000091528	Gm9268	EG668612|Vmn2r64	predicted gene 9268	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-4793326-4	chr4	4793205	4793405	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177730)	promoter-TSS (NM_177730)	1.0	NM_177730	242291.0	Mm.218889	NM_177730	ENSMUSG00000066324	Impad1	1110001C20Rik|AA408880|AI451589|AL022796|B230207P20|Jaws|gPAPP	inositol monophosphatase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134319742-3	chr6	134319642	134319842	+	974.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153848, intron 4 of 8)	MLT1B|LTR|ERVL-MaLR	-76587.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	1.62166035291639	0.923750572768763	0.889440056692139	0.861521821531743	2.10929695364854	0.931219558703717	2.67604030598383	3.15088279122945	3.53837598496283	0.00588688808900763	0.0757300392693856
Merged-chr13-64100421-3	chr13	64100327	64100527	+	721.722229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001321, intron 9 of 11)	intron (NM_001001321, intron 9 of 11)	-11226.0	NM_008291	15487.0	Mm.5109	NM_008291	ENSMUSG00000033122	Hsd17b3	-	hydroxysteroid (17-beta) dehydrogenase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34171155-5	chr17	34171078	34171278	+	861.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	16152.0	NM_013585	16912.0	Mm.390983	NM_013585	ENSMUSG00000096727	Psmb9	Lmp-2|Lmp2	proteasome (prosome, macropain) subunit, beta type 9 (large multifunctional peptidase 2)	protein-coding	-0.981573151982451	-0.965308015626798	-0.803398038550742	-0.978276799526808	-0.839070898706769	-0.962802668823411	-0.522792555338674	-0.977928887847814	1.76437835350328	0.547415294350304	1
Merged-chr3-79248982-1	chr3	79248882	79249082	+	936.0	f1_balb.idr	intron (NR_045502, intron 2 of 2)	intron (NR_045502, intron 2 of 2)	36063.0	NR_045502	70924.0	Mm.444622	NR_045502	ENSMUSG00000104585	4921511C10Rik	-	RIKEN cDNA 4921511C10 gene	ncRNA	2.19524830922379	1.44522832922684	3.59717990370963	2.44271894998677	2.62606703559916	2.62728874793455	2.2657753670498	2.33200414153805	-0.41086754712043	0.637892990528387	0.982553932774682
Merged-chr4-8536161-4	chr4	8536078	8536278	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021518, intron 1 of 7)	CpG	534.0	NM_021518	59021.0	Mm.397471	NM_021518	ENSMUSG00000047187	Rab2a	9330148M11Rik|C80220|Rab2	RAB2A, member RAS oncogene family	protein-coding	4.34823725314467	4.84127023304393	5.9917412870814	4.42679455460115	4.69813900541322	4.44546833248558	4.09963005139752	4.04061578489209	-0.891550387007983	0.0441454393397877	0.301856182294133
Merged-chr13-94468201-2	chr13	94468101	94468301	+	603.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009680, intron 15 of 26)	ID4|SINE|ID	109241.0	NM_009680	11774.0	Mm.21185	NM_009680	ENSMUSG00000021686	Ap3b1	AP-3|AU015684|C78395|Hps2|beta3A|pe|pearl|rim2	adaptor-related protein complex 3, beta 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81303058-2	chr10	81302958	81303158	+	690.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001293647, intron 1 of 17)	intron (NM_001293647, intron 1 of 17)	10095.0	NM_001146687	18717.0	Mm.24222	NM_008844	ENSMUSG00000034902	Pip5k1c	AI115456|AI835305|Pip5kIgamma	phosphatidylinositol-4-phosphate 5-kinase, type 1 gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-90293311-2	chr16	90293211	90293411	+	929.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	-8808.0	NM_178923	224432.0	Mm.439811	NM_178923	ENSMUSG00000022983	Scaf4	AA517739|Sfrs15|Sra4|Srsf15	SR-related CTD-associated factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-39426913-1	chr8	39426813	39427013	+	640.0	f0_balb.idr	Intergenic	Intergenic	128933.0	NR_044988	621335.0	Mm.208080	NR_044988	ENSMUSG00000109827	Gm6213	EG621335	predicted gene 6213	ncRNA	-0.113317776452895	-0.0913848183381917	-0.0984835480285986	-0.104017077351053	0.206934966297132	1.0299645319357	-0.0969108589815695	0.254659002299309	4.19359676704722	0.0492813950199507	1
Merged-chr13-47214291-1	chr13	47214191	47214391	+	722.0	f0_balb.idr	intron (NM_146042, intron 2 of 7)	intron (NM_146042, intron 2 of 7)	20288.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-15793727-4	chr6	15793593	15793793	+	943.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175088, intron 4 of 4)	intron (NM_175088, intron 4 of 4)	73032.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-93432662-4	chr10	93432592	93432792	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_106161)	promoter-TSS (NR_106161)	-415.0	NR_106161	102465791.0		NR_106161	ENSMUSG00000098679	Mir7688	Gm27874|mmu-mir-7688	microRNA 7688	ncRNA	2.31037797946561	1.84800668724619	1.63009763044141	2.28070607296469	1.79657838757668	1.24435925946682	2.06509125853784	1.88364804047565	-0.753367334995873	0.457014801869927	0.919371384099387
Merged-chr2-167777690-8	chr2	167777537	167777737	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	86460.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-147571234-2	chr4	147571134	147571334	+	605.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001014397, intron 3 of 5)	Lx3A|LINE|L1	17957.0	NM_001014397	433804.0	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154	zinc finger protein 985	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-127015768-4	chr4	127015678	127015878	+	971.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5523.0	NR_045010	71514.0	Mm.257276	NM_023603	ENSMUSG00000028820	Sfpq	1110004P21Rik|2810416M14Rik|5730453G22Rik|9030402K04Rik|AU021830|D4Ertd314e|Gm12940|PSF|REP1	splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-15706746-2	chr9	15706646	15706846	+	678.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2992.0	NM_001357566	234967.0	Mm.138815	NM_172289	ENSMUSG00000043885	Slc36a4	6330573I15Rik|PAT4	solute carrier family 36 (proton/amino acid symporter), member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-110836245-1	chr5	110836145	110836345	+	636.0	f1_balb.idr	intron (NR_153348, intron 2 of 5)	intron (NR_153348, intron 2 of 5)	3532.0	NM_001359835	100900.0	Mm.200231	NM_153571	ENSMUSG00000043510	Hscb	AI325508|AW049829|Hsc20	HscB iron-sulfur cluster co-chaperone	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-130713991-2	chr1	130713891	130714091	+	631.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162415, intron 3 of 15)	intron (NM_001162415, intron 3 of 15)	585.0	NM_001162416	18640.0	Mm.249861	NM_008825	ENSMUSG00000026409	Pfkfb2	4930568D07Rik	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83686468-4	chr11	83686367	83686567	+	850.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-17589.0	NM_001081957	100034251.0	Mm.24097	NM_001081957	ENSMUSG00000069792	Wfdc17	Amwap|Gm11428	WAP four-disulfide core domain 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88604891-2	chr3	88604791	88604991	+	971.1666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F2|SINE|Alu	-11316.0	NM_001198911	16800.0	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-121277305-2	chr9	121277205	121277405	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177589)	promoter-TSS (NM_177589)	-133.0	NM_177589	209012.0	Mm.371804	NM_177589	ENSMUSG00000040936	Ulk4	4932415A06Rik|A730098P15	unc-51-like kinase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-16326722-2	chr19	16326622	16326822	+	624.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008139, intron 3 of 6)	intron (NM_008139, intron 3 of 6)	-11718.0	NR_105832	102465218.0		NR_105832	ENSMUSG00000098718	Mir496b	Gm28028|mmu-mir-496b	microRNA 496b	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-61723138-2	chr11	61723038	61723238	+	923.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-2339.0	NM_001033227	109342.0	Mm.441070	NM_001033227	ENSMUSG00000042371	Slc5a10	C330021F16Rik|SGLT5	solute carrier family 5 (sodium/glucose cotransporter), member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-90649534-3	chr15	90649434	90649634	+	854.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033851, intron 1 of 3)	intron (NM_001033851, intron 1 of 3)	29854.0	NM_025815	66871.0	Mm.290991	NM_025815	ENSMUSG00000052560	Cpne8	1200003E11Rik|1500031E20Rik	copine VIII	protein-coding	0.6374925879354	0.358081163279456	1.20011221763799	0.341327885904059	0.64534009910969	0.360186608142841	1.3069070802806	0.342615950963007	0.220745017597733	0.903089540414834	1
Merged-chr2-166155249-2	chr2	166155149	166155349	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252578)	promoter-TSS (NM_001252578)	36.0	NM_001355619	72043.0	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-115963025-2	chr4	115962925	115963125	+	618.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-23099.0	NM_130865	140477.0	Mm.213206	NM_130865	ENSMUSG00000028707	Dmbx1	Atx|Cdmx|Mbx|Otx3	diencephalon/mesencephalon homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-89205595-4	chr9	89205498	89205698	+	880.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007534, intron 1 of 1)	intron (NM_007534, intron 1 of 1)	-5592.0	NM_026829	107885.0	Mm.486274	NM_026829	ENSMUSG00000066442	Mthfs	1110034I12Rik|2310020H23Rik|AI119695	5, 10-methenyltetrahydrofolate synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-4093909-2	chr11	4093809	4094009	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_026443, exon 3 of 4)	exon (NM_026443, exon 3 of 4)	1522.0	NM_026443	67900.0	Mm.41719	NM_026443	ENSMUSG00000004748	Mtfp1	1700020C11Rik|2610507A21Rik|AV005788|Mtp18	mitochondrial fission process 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-102027409-3	chr5	102027301	102027501	+	702.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 2 of 66)	intron (NM_172882, intron 2 of 66)	42520.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0.698373051474113	0.966494752033408	0.726563005421904	1.34067706756467	1.37487428612214	0.742888974426653	1.619708570299	1.64897570821996	1.81104353454217	0.220962602371893	0.712117798468663
Merged-chr4-135982207-4	chr4	135982082	135982282	+	888.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025411, intron 3 of 5)	L1MA5|LINE|L1	5062.0	NM_025411	66193.0	Mm.29131	NM_025411	ENSMUSG00000028669	Pithd1	1110049F12Rik|AA408179|Trp26	PITH (C-terminal proteasome-interacting domain of thioredoxin-like) domain containing 1	protein-coding	2.00383481847029	2.46942828169296	2.15485647890762	2.21903517040047	2.01835293164174	2.23976333227346	2.50857396756265	2.33830130682796	0.169203614792627	0.8392804753052	0.998431161219273
Merged-chr5-129995941-1	chr5	129995841	129996041	+	1000.0	f1_balb.idr	intron (NM_001357025, intron 7 of 10)	intron (NM_001357025, intron 7 of 10)	7108.0	NM_010368	110006.0	Mm.3317	NM_010368	ENSMUSG00000025534	Gusb	AI747421|Gur|Gus|Gus-r|Gus-s|Gus-t|Gus-u|Gut|asd|g	glucuronidase, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-33950808-2	chr17	33950716	33950916	+	621.5	f0_balb.idr|f0_c57.idr	exon (NM_019420, exon 1 of 1)	exon (NM_019420, exon 1 of 1)	672.0	NM_019420	54218.0	Mm.11132	NM_019420	ENSMUSG00000067370	B3galt4	Gal-T2|Galt2	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 4	protein-coding	1.84551068151516	1.10607832317107	2.27435199726536	1.94895966590641	1.76374102565413	1.35054455899972	1.31480698858458	1.73929667179436	-0.937222431917316	0.402394365938699	0.887921947498623
Merged-chr12-87444653-3	chr12	87444542	87444742	+	841.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001013372)	promoter-TSS (NM_001013372)	-625.0	NM_001013372	654309.0	Mm.442579	NM_001013372	ENSMUSG00000079036	Nrp	-	neural regeneration protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88136248-2	chr3	88136148	88136348	+	933.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-6124.0	NM_001310593	17261.0	Mm.28184	NM_133665	ENSMUSG00000001419	Mef2d	C80750	myocyte enhancer factor 2D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-4727828-1	chr15	4727728	4727928	+	750.0	f0_balb.idr	intron (NM_016704, intron 1 of 15)	intron (NM_016704, intron 1 of 15)	618.0	NM_016704	12274.0	Mm.20247	NM_016704	ENSMUSG00000022181	C6	AW111623	complement component 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27025752-4	chr2	27025651	27025851	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177627, intron 3 of 8)	L2|LINE|L2	2247.0	NM_172659	227659.0	Mm.41203	NM_172659	ENSMUSG00000036067	Slc2a6	A330096C23|F630103L12Rik|Glut6|Glut9	solute carrier family 2 (facilitated glucose transporter), member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-101946997-1	chr5	101946897	101947097	+	600.0	f1_balb.idr	intron (NM_172882, intron 10 of 66)	RSINE1|SINE|B4	122924.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	-0.378301428097445	-0.617646774418661	-0.192459316399118	-0.623045245489003	-0.626340459988118	-0.616955968211879	-0.6200287149772	-0.333960733938854	-1.21361688625292	0.656969341595014	1
Merged-chr1-165457635-4	chr1	165457529	165457729	+	676.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028759, intron 1 of 18)	intron (NM_028759, intron 1 of 18)	2834.0	NM_028759	74106.0	Mm.227605	NM_028759	ENSMUSG00000026571	Dcaf6	1200006M05Rik|Iqwd1|PC326	DDB1 and CUL4 associated factor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-32785919-4	chr14	32785807	32786007	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163616)	promoter-TSS (NM_001163616)	-56.0	NM_001163616	69069.0	Mm.261609	NM_001163616	ENSMUSG00000041707	1810011H11Rik	4733401I05Rik	RIKEN cDNA 1810011H11 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-64847114-4	chr18	64846996	64847196	+	859.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40660.0	NM_001114386	83814.0	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	4.66027649340943	2.6545339532337	4.40446906297224	3.78353952486314	3.91925745175958	2.46488751811472	4.43598321268323	4.3107711993581	-0.141485756987094	0.81271489216458	0.998431161219273
Merged-chr8-120747880-2	chr8	120747780	120747980	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301811, intron 5 of 8)	intron (NM_001301811, intron 5 of 8)	9241.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88618319-4	chr3	88618222	88618422	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198911, intron 2 of 22)	intron (NM_001198911, intron 2 of 22)	2115.0	NM_001198911	16800.0	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	4.38126436063389	3.3611939734603	3.65705221132172	3.93264791272003	5.22925903159317	4.8493539820725	3.38291661331175	4.44612310933243	0.965492572076544	0.050131343135665	0.326481972985203
Merged-chr12-102461797-1	chr12	102461697	102461897	+	657.0	f1_balb.idr	Intergenic	Intergenic	-7337.0	NM_001199004	27277.0	Mm.273370	NM_013747	ENSMUSG00000021192	Golga5	Ret-II	golgi autoantigen, golgin subfamily a, 5	protein-coding	1.25754414363106	1.81781429004728	1.48489548758924	1.45073824509971	2.11720777731818	1.3584074980421	1.64175930781348	2.01039358788869	1.08106910214658	0.322016795693227	0.823903365381149
Merged-chr3-95106921-4	chr3	95106816	95107016	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008847)	promoter-TSS (NM_008847)	14.0	NM_008847	18720.0	Mm.296409	NM_008847	ENSMUSG00000028126	Pip5k1a	PI4P5K-I[a]|PIP5K1-alpha|PIP5KIalpha|Pipk5a	phosphatidylinositol-4-phosphate 5-kinase, type 1 alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-69920462-4	chr8	69920382	69920582	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286450, intron 3 of 12)	intron (NM_001286450, intron 3 of 12)	-17924.0	NM_023312	67184.0	Mm.21162	NM_023312	ENSMUSG00000036199	Ndufa13	2700054G14Rik|AU022060|CDA016|CGI-39|GRIM-19|Grim19	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 13	protein-coding	1.07343173984835	1.01973672060492	2.08684455161312	1.27909629336159	1.44145370122563	0.787382429100541	0.772220762470045	1.28656156762212	-1.24248918044701	0.359833535740025	0.856306289008338
Merged-chr6-38507264-4	chr6	38507154	38507354	+	913.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_106130)	promoter-TSS (NR_106130)	-71.0	NR_106130	102466843.0		NR_106130	ENSMUSG00000098285	Mir7670	Gm27707|mmu-mir-7670	microRNA 7670	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-124275208-4	chr9	124275098	124275298	+	878.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37496.0	NM_001243118	630836.0	Mm.458553	NM_001243117	ENSMUSG00000074829	2010315B03Rik	BC029716	RIKEN cDNA 2010315B03 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75153834-1	chr11	75153734	75153934	+	983.0	f1_c57bl6.idr	intron (NM_001002764, intron 15 of 18)	intron (NM_001002764, intron 15 of 18)	14318.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	0.923176417162902	0.470496545222477	0.462916789785599	0.992414581115152	1.02322468941705	0.973322218762477	0.464589652521189	0.625346104673466	0.297081974592213	0.860972649282484	1
Merged-chr3-68666599-4	chr3	68666480	68666680	+	840.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24064.0	NM_001159424	16159.0	Mm.103783	NM_008351	ENSMUSG00000027776	Il12a	IL-12p35|Il-12a|Ll12a|p35	interleukin 12a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141602672-2	chr4	141602572	141602772	+	797.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133754, intron 1 of 8)	intron (NM_133754, intron 1 of 8)	-2748.0	NM_001163256	74202.0	Mm.490327	NM_133754	ENSMUSG00000006219	Fblim1	2410043F08Rik|Cal|Fblp1|Gt10|migfilin|migfilin(s)	filamin binding LIM protein 1	protein-coding	1.01871790865612	0.522689874462906	0.512739727493122	1.29241548953029	1.43972427430997	0.524917804398807	0.715966518109398	0.692963276640051	0.0918574661730364	0.955489232849071	0.998431161219273
Merged-chr8-122020207-1	chr8	122020107	122020307	+	745.0	f1_c57bl6.idr	intron (NM_016812, intron 11 of 13)	intron (NM_016812, intron 11 of 13)	42183.0	NR_106096	102466915.0		NR_106096	ENSMUSG00000099140	Mir7237	Gm27482|mmu-mir-7237	microRNA 7237	ncRNA	0.816142792282183	2.04620259254467	1.87050234068993	1.8023112040678	0.604597486222506	0.66600483138978	0.646794873397111	0.629838784767897	-5.20034908000124	0.00071370111193952	0.0148319617916577
Merged-chr10-96373699-4	chr10	96373611	96373811	+	892.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	147504.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-88045239-4	chr6	88045115	88045315	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001293652)	promoter-TSS (NM_001293652)	55.0	NM_001293652	19349.0	Mm.333233	NM_009005	ENSMUSG00000079477	Rab7	Rab7a	RAB7, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-79173866-2	chr12	79173766	79173966	+	855.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001362269)	TTS (NM_001362269)	-1408.0	NM_016800	53612.0	Mm.265929	NM_016800	ENSMUSG00000021124	Vti1b	AU015348|GES30|MVti1b|SNARE|Vti1-rp1	vesicle transport through interaction with t-SNAREs 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-116530006-4	chr7	116529887	116530087	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360375, intron 11 of 14)	ORR1B2|LTR|ERVL-MaLR	25618.0	NM_001360375	53322.0	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28596740-2	chr7	28596640	28596840	+	620.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027470, intron 1 of 9)	intron (NM_027470, intron 1 of 9)	1444.0	NM_027470	70584.0	Mm.21876	NM_027470	ENSMUSG00000030602	Pak4	5730488L07Rik|AW555722|mKIAA1142	p21 (RAC1) activated kinase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-137386532-4	chr6	137386417	137386617	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011216, intron 7 of 26)	intron (NM_011216, intron 7 of 26)	-24204.0	NM_001164402	19277.0	Mm.186361	NM_011216	ENSMUSG00000030223	Ptpro	D28|GLEPP1|PTPBK|PTPROt|PTPU2|PTPoc|PTPphi|Ptpn15|R-PTP-O	protein tyrosine phosphatase, receptor type, O	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-146222195-4	chr6	146222094	146222294	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019923, intron 45 of 56)	intron (NM_019923, intron 45 of 56)	280029.0	NM_010586	16439.0	Mm.7800	NM_010586	ENSMUSG00000030287	Itpr2	AI649341|InsP3R-2|InsP3R-5|Ip3r2|Itpr5|insP3R2	inositol 1,4,5-triphosphate receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32777995-2	chr2	32777895	32778095	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028273)	promoter-TSS (NR_028273)	7.0	NR_028273	100302592.0		NR_028273	ENSMUSG00000064741	Snord14a	Rnu14|U14	small nucleolar RNA, C/D box 14A	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70508629-2	chr14	70508529	70508729	+	599.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_033241, intron 3 of 19)	intron (NR_033241, intron 3 of 19)	11631.0	NM_009755	12153.0	Mm.27757	NM_009755	ENSMUSG00000022098	Bmp1	Pcp|Tld	bone morphogenetic protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132526142-1	chr4	132526042	132526242	+	544.0	f1_balb.idr	Intergenic	B1_Mus1|SINE|Alu	9272.0	NM_007512	11983.0	Mm.2171	NM_007512	ENSMUSG00000054428	Atpif1	Atpi|IF(1)|If1	ATPase inhibitory factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-121464707-4	chr1	121464607	121464807	+	976.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029955, intron 11 of 23)	intron (NM_029955, intron 11 of 23)	33640.0	NM_029955	70829.0	Mm.25788	NM_027567	ENSMUSG00000026339	Ccdc93	4633402D15Rik|9230102M16Rik	coiled-coil domain containing 93	protein-coding	1.4977546383125	1.30915392080172	1.6263094871938	2.35382397228327	1.1975350378951	2.09654880872925	2.02065031439586	1.02581804890876	-0.268334114655682	0.817079015951111	0.998431161219273
Merged-chr2-128771245-4	chr2	128771151	128771351	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 8 of 18)	intron (NM_008587, intron 8 of 18)	-47052.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	3.227949580671	3.33097713274616	3.66380398283595	3.88671917133752	3.17026343310236	3.73521996623391	3.12876693624769	4.41114901312389	0.254794457398221	0.648072183030163	0.984971605872381
Merged-chr14-70024244-2	chr14	70024144	70024344	+	960.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028560, intron 4 of 6)	B4A|SINE|B4	-53201.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111376786-3	chr12	111376670	111376870	+	970.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183016, intron 1 of 36)	intron (NM_183016, intron 1 of 36)	948.0	NM_183016	217866.0	Mm.27397	NM_183016	ENSMUSG00000021279	Cdc42bpb	MRCKb	CDC42 binding protein kinase beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84979914-4	chr8	84979842	84980042	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1194.0	NM_008416	16477.0	Mm.1167	NM_008416	ENSMUSG00000052837	Junb	-	jun B proto-oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-32494818-2	chr17	32494718	32494918	+	646.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11644.0	NM_001101445	208285.0	Mm.311422	NM_001101445	ENSMUSG00000091586	Cyp4f17	EG208285	cytochrome P450, family 4, subfamily f, polypeptide 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-109468986-2	chr11	109468886	109469086	+	641.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001029842, intron 1 of 5)	B1_Mur2|SINE|Alu	4243.0	NM_134038	104681.0	Mm.265874	NM_134038	ENSMUSG00000041920	Slc16a6	AW743111|ESTM12|MCT 6|MCT 7|MCT6	solute carrier family 16 (monocarboxylic acid transporters), member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152838252-4	chr1	152838190	152838390	+	875.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001359257, exon 24 of 24)	3' UTR (NM_001359257, exon 24 of 24)	38137.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-148333684-1	chr3	148333584	148333784	+	548.0	f1_balb.idr	Intergenic	MTEa|LTR|ERVL-MaLR	620951.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	-0.0581520759127025	-0.0374871630525165	-0.0441982380018224	0.422307105644899	0.248227363517426	0.962796323892548	-0.0427132892534574	-0.0485008102838266	1.80962232109835	0.411938231280231	1
Merged-chr16-10957469-2	chr16	10957369	10957569	+	672.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35652.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-81889176-3	chr12	81889083	81889283	+	679.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018814, intron 1 of 35)	L1MB2|LINE|L1	29153.0	NM_018814	54604.0	Mm.86584	NM_018814	ENSMUSG00000021140	Pcnx	2900024E21Rik|3526401J03Rik|AF096286|AI327143|AI413187|Pcnx1|Pcnxl1	pecanex homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-54507918-4	chr8	54507825	54508025	+	960.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22073.0	NM_029701	76687.0	Mm.86437	NM_029701	ENSMUSG00000054408	Spcs3	1810011E08Rik|SPC22/23	signal peptidase complex subunit 3 homolog (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141328108-4	chr7	141327999	141328199	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001282076)	promoter-TSS (NM_001282076)	-31.0	NM_001141950	71448.0	Mm.248960	NM_027797	ENSMUSG00000025505	Tmem80	5530601I19Rik	transmembrane protein 80	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-30599772-3	chr3	30599660	30599860	+	907.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029690, exon 1 of 2)	exon (NM_029690, exon 1 of 2)	110.0	NM_029690	76652.0	Mm.116928	NM_029690	ENSMUSG00000037737	Actrt3	1700119I24Rik|ARP-T3|Arpm1	actin related protein T3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-125581423-4	chr7	125581357	125581557	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-21972.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	5.41815707879571	4.86376322961987	4.89739293183423	5.88365922241712	6.95373666938634	6.43177890091396	6.15662564224739	6.64274630776208	1.36439804344771	1.07514279350616e-06	6.8566243097163e-05
Merged-chr10-17579005-4	chr10	17578905	17579105	+	773.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-144223.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-100099431-2	chr12	100099331	100099531	+	595.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12900.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-127792840-4	chr3	127792747	127792947	+	986.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356430, intron 2 of 2)	intron (NM_001356430, intron 2 of 2)	2190.0	NM_001356430	211550.0	Mm.31852	NM_145133	ENSMUSG00000046688	Tifa	T2bp	TRAF-interacting protein with forkhead-associated domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-43408927-7	chr6	43408883	43409083	+	863.9285890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013861, intron 8 of 8)	intron (NM_013861, intron 8 of 8)	-33446.0	NR_045988	319812.0	Mm.446393	NR_045988		9430018G01Rik	-	RIKEN cDNA 9430018G01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-79019477-3	chr11	79019370	79019570	+	861.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001348207, intron 16 of 17)	intron (NM_001348207, intron 16 of 17)	-4127.0	NR_045873	790910.0	Mm.440410	NR_045873		Gm11201	-	predicted gene 11201	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-55240781-4	chr11	55240690	55240890	+	924.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36450.0	NM_153139	215335.0	Mm.35732	NM_153139	ENSMUSG00000020261	Slc36a1	5830411H19Rik|AI839897|Pat1	solute carrier family 36 (proton/amino acid symporter), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-9597581-3	chr1	9597481	9597681	+	993.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015470, intron 3 of 4)	L1_Mus3|LINE|L1	-3686.0	NM_178399	76982.0	Mm.491098	NM_178399	ENSMUSG00000067879	3110035E14Rik	AI415019|AV164974|R75066	RIKEN cDNA 3110035E14 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-58256484-2	chr9	58256384	58256584	+	854.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_028146, intron 3 of 7)	ORR1F|LTR|ERVL-MaLR	3320.0	NM_026942	69106.0	Mm.216502	NM_026942	ENSMUSG00000032333	Stoml1	1810015E19Rik|AI847431|SLP1|STORP|UNC24|WPB72	stomatin-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-116581519-11	chr10	116581442	116581642	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028082)	promoter-TSS (NM_028082)	-31.0	NM_001359249	72068.0	Mm.351553	NM_028082	ENSMUSG00000020166	Cnot2	2600016M12Rik|2810470K03Rik|AA537049|AA959607|AW557563|C79650	CCR4-NOT transcription complex, subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118633038-4	chr9	118632928	118633128	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 3 of 27)	intron (NM_133721, intron 3 of 27)	26319.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165878800-2	chr2	165878700	165878900	+	814.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291158)	promoter-TSS (NM_001291158)	-363.0	NM_001291158	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-157133423-2	chr2	157133323	157133523	+	561.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001139520, intron 1 of 16)	B3A|SINE|B2	1799.0	NM_001139520	56045.0	Mm.248478	NM_018851	ENSMUSG00000027639	Samhd1	E330031J07Rik|Mg11	SAM domain and HD domain, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-40697791-2	chr11	40697691	40697891	+	722.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2588.0	NM_001199274	108645.0	Mm.293771	NM_134017	ENSMUSG00000042032	Mat2b	1110064C04Rik|2410018D16Rik|AI182287|AU022853|MAT-II|MATIIbeta|TGR	methionine adenosyltransferase II, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98938769-2	chr11	98938669	98938869	+	693.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177303)	promoter-TSS (NM_001177303)	-942.0	NM_001177303	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-87924771-3	chr7	87924677	87924877	+	870.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081414, intron 4 of 9)	L1M2|LINE|L1	340609.0	NM_001143834	108071.0	Mm.235018	NM_001033224	ENSMUSG00000049583	Grm5	6430542K11Rik|AI850523|Glu5R|Gprc1e|mGluR5|mGluR5b	glutamate receptor, metabotropic 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80401657-2	chr10	80401557	80401757	+	917.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-2126.0	NM_001306143	17192.0	Mm.7142	NM_013595	ENSMUSG00000035478	Mbd3	AI181826|AU019209	methyl-CpG binding domain protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133353034-2	chr4	133352934	133353134	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13719.0	NM_199306	230796.0	Mm.226576	NM_199306	ENSMUSG00000037622	Wdtc1	Gm695|adipose|adp	WD and tetratricopeptide repeats 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-123341689-2	chr4	123341589	123341789	+	707.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007558, intron 1 of 6)	B3|SINE|B2	1563.0	NM_001256019	12163.0	Mm.439749	NM_007558	ENSMUSG00000032726	Bmp8a	Bmp7r1|OP-2|OP2	bone morphogenetic protein 8a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-82762799-4	chr18	82762692	82762892	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3753.0	NR_045389	76961.0	Mm.396392	NR_045389	ENSMUSG00000101773	2210420H20Rik	-	RIKEN cDNA 2210420H20 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-111060561-2	chr9	111060461	111060661	+	665.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2C_Mm|LTR|ERVL	-3043.0	NM_001302376	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	0.100352509202552	0.832493101543923	0.118331558017107	0.111636280967535	0.102044909897439	1.17195859808781	0.509839682956631	0.112811294432834	1.20404751514396	0.560374248329371	1
Merged-chr4-129377298-2	chr4	129377198	129377398	+	775.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_028603, intron 1 of 4)	CpG	730.0	NM_028603	73680.0	Mm.32997	NM_028603	ENSMUSG00000028807	Zbtb8a	2410081M15Rik|AI480941	zinc finger and BTB domain containing 8a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-12991844-4	chr17	12991725	12991925	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175394, intron 1 of 5)	CpG	434.0	NM_001113533	60532.0	Mm.275521	NM_175394	ENSMUSG00000060475	Wtap	2810408K05Rik|9430038B09Rik	Wilms tumour 1-associating protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-85507164-3	chr8	85507052	85507252	+	683.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173866, intron 4 of 11)	intron (NM_173866, intron 4 of 11)	14535.0	NM_173866	108682.0	Mm.200423	NM_173866	ENSMUSG00000031700	Gpt2	4631422C05Rik|ALT2|AU014768|AU041193|C87201	glutamic pyruvate transaminase (alanine aminotransferase) 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-66454158-4	chr15	66454038	66454238	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_019457, exon 5 of 12)	exon (NM_019457, exon 5 of 12)	46772.0	NM_019457	54562.0	Mm.244890	NM_019457	ENSMUSG00000022375	Lrrc6	LRTP	leucine rich repeat containing 6 (testis)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-138013027-1	chr4	138012927	138013127	+	786.0	f0_balb.idr	intron (NM_001355699, intron 1 of 32)	intron (NM_001355699, intron 1 of 32)	15202.0	NM_001355700	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	1.31178281028849	1.26752425934702	1.04834961992245	1.2130507663419	2.37356787963018	1.76196667298235	1.05128423914304	2.16687998592295	2.91572910294656	0.0231486395875979	0.198151399007427
Merged-chr10-99602460-4	chr10	99602336	99602536	+	651.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6735.0	NR_038019	100504202.0	Mm.403801	NR_038019	ENSMUSG00000111962	Gm20110	-	predicted gene, 20110	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75018270-2	chr11	75018170	75018370	+	560.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001002764, intron 10 of 18)	intron (NM_001002764, intron 10 of 18)	47721.0	NR_030454	735274.0		NR_030454	ENSMUSG00000106252	Mir684-1	Mirn684-1	microRNA 684-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-122223861-4	chr14	122223759	122223959	+	949.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029556, intron 1 of 7)	intron (NM_029556, intron 1 of 7)	9779.0	NR_015532	68245.0	Mm.443285	NR_015532	ENSMUSG00000100585	1700108J01Rik	-	RIKEN cDNA 1700108J01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-55795733-6	chr16	55795674	55795874	+	948.267822	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26364.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-143059108-2	chr7	143059008	143059208	+	762.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133655, intron 1 of 7)	intron (NM_133655, intron 1 of 7)	-5422.0	NR_110354	97423.0	Mm.5250	NM_133790	ENSMUSG00000059277	R74862	-	expressed sequence R74862	ncRNA	-2.18361151404719	-2.02201993626881	-2.16403530460334	-2.1710062446989	-2.18164157430194	-2.15370992785044	-2.16211418110791	-2.16975844975469	-0.683654500252594	0.846597994014493	1
Merged-chr11-114694172-4	chr11	114694032	114694232	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053273, intron 3 of 13)	intron (NM_053273, intron 3 of 13)	18664.0	NM_053273	117160.0	Mm.271934	NM_053273	ENSMUSG00000034714	Ttyh2	1110001A03Rik	tweety family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-31220171-2	chr5	31220071	31220271	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008014, intron 1 of 9)	CpG	374.0	NM_008014	14208.0	Mm.14501	NM_008014	ENSMUSG00000029147	Ppm1g	AI385652|Fin13	protein phosphatase 1G (formerly 2C), magnesium-dependent, gamma isoform	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5406000-2	chr19	5405900	5406100	+	746.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015545)	promoter-TSS (NR_015545)	-815.0	NR_015545	74931.0	Mm.388511	NR_015545	ENSMUSG00000086938	4930481A15Rik	-	RIKEN cDNA 4930481A15 gene	ncRNA	-1.52696403314699	-1.49523967873556	-1.5048333853602	-1.51271394162622	-1.52473704212565	-1.49316068248889	-1.50266158046844	-1.06847079017215	2.01069003169785	0.564432837776867	1
Merged-chr15-31226719-2	chr15	31226619	31226819	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146057, intron 1 of 3)	intron (NM_146057, intron 1 of 3)	2334.0	NM_146057	223453.0	Mm.222867	NM_146057	ENSMUSG00000039168	Dap	4921531N22Rik|AI789753|AU040360	death-associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-20294686-2	chr3	20294586	20294786	+	575.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18953.0	NM_029706	76703.0	Mm.34692	NM_029706	ENSMUSG00000011463	Cpb1	0910001A18Rik|1810063F02Rik|2210008M23Rik|AI504870	carboxypeptidase B1 (tissue)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-5738323-4	chr15	5738227	5738427	+	741.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1VL1|LINE|L1	242009.0	NR_045274	71432.0	Mm.291087	NR_045274	ENSMUSG00000110018	5430437J10Rik	-	RIKEN cDNA 5430437J10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-4345500-1	chr18	4345400	4345600	+	675.5	f0_balb.idr	intron (NM_007746, intron 2 of 7)	intron (NM_007746, intron 2 of 7)	7453.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-101158381-2	chr4	101158281	101158481	+	661.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146145, intron 19 of 24)	intron (NM_146145, intron 19 of 24)	89343.0	NM_183024	242570.0	Mm.185636	NM_183024	ENSMUSG00000035275	Raver2	A430091O22Rik	ribonucleoprotein, PTB-binding 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-130284416-4	chr2	130284310	130284510	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_130884)	promoter-TSS (NM_130884)	41.0	NM_130884	170718.0	Mm.29590	NM_130884	ENSMUSG00000027406	Idh3b	C78231	isocitrate dehydrogenase 3 (NAD+) beta	protein-coding	2.35543126191963	2.27202637541568	2.32800063303476	2.73322958404341	2.46232736301956	1.74611607597955	2.21578480831366	2.48983472624142	-0.389482482800648	0.637471260819368	0.982417279970648
Merged-chr4-141246709-4	chr4	141246606	141246806	+	813.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172520, intron 3 of 16)	intron (NM_172520, intron 3 of 16)	3822.0	NM_172520	213649.0	Mm.134460	NM_172520	ENSMUSG00000028919	Arhgef19	6030432F23|6430573B13Rik|WGEF	Rho guanine nucleotide exchange factor (GEF) 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116076947-2	chr11	116076847	116077047	+	875.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001009573, intron 2 of 32)	intron (NM_001009573, intron 2 of 32)	1014.0	NM_001009573	70450.0	Mm.259460	NM_001009573	ENSMUSG00000057948	Unc13d	2610108D09Rik|Jinx|Munc13-4|mFLJ00067	unc-13 homolog D (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-57330666-2	chr17	57330566	57330766	+	554.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-28020.0	NM_001355723	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-113469661-4	chr6	113469562	113469762	+	876.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001034029, exon 14 of 14)	exon (NM_001034029, exon 14 of 14)	-1793.0	NM_178942	171095.0	Mm.213397	NM_134159	ENSMUSG00000030281	Il17rc	1110025H02Rik|Gm19850|IL-17RC|IL17-RC|IL17-RL|Il17rl	interleukin 17 receptor C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-55398478-4	chr18	55398372	55398572	+	666.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER34|LTR|ERV1	-405881.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-8637611-4	chr16	8637485	8637685	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016881)	promoter-TSS (NM_016881)	116.0	NM_025708	66690.0	Mm.10068	NM_025708	ENSMUSG00000043140	Tmem186	2810440M13Rik|4432406C05Rik|AI648175|AW210586	transmembrane protein 186	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171064625-4	chr1	171064522	171064722	+	898.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_106103)	promoter-TSS (NR_106103)	30.0	NR_106103	102466998.0		NR_106103	ENSMUSG00000099119	Mir6546	Gm27408|mmu-mir-6546	microRNA 6546	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-63564954-4	chr13	63564820	63565020	+	856.279175	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001328514, intron 1 of 23)	CpG-3956	815.0	NM_008957	19206.0	Mm.228798	NM_008957	ENSMUSG00000021466	Ptch1	A230106A15Rik|Ptc|Ptc1|Ptch|mes|wig	patched 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-39906177-3	chr1	39906080	39906280	+	895.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252202, intron 2 of 29)	intron (NM_001252202, intron 2 of 29)	5267.0	NM_008696	26921.0	Mm.491139	NM_008696	ENSMUSG00000026074	Map4k4	9430080K19Rik|AU043147|AU045934|AW046177|HGK|Nik	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-29553186-4	chr5	29553092	29553292	+	901.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15243.0	NR_102704	619355.0	Mm.426744	NR_102704		Gm6083	-	developmental pluripotency associated 5 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-52721051-2	chr15	52720951	52721151	+	607.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_027212, exon 3 of 4)	exon (NM_027212, exon 3 of 4)	8606.0	NM_027212	69790.0	Mm.195562	NM_027212	ENSMUSG00000038622	Med30	1810038N03Rik|2510044J04Rik|TRAP25|Thrap6	mediator complex subunit 30	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-86084544-2	chr12	86084444	86084644	+	706.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029601, intron 1 of 7)	intron (NM_029601, intron 1 of 7)	1983.0	NM_001199843	76411.0	Mm.292345	NM_029601	ENSMUSG00000007867	Ift43	1700019E19Rik|R75064	intraflagellar transport 43	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-38522715-4	chr16	38522633	38522833	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024273)	promoter-TSS (NM_024273)	-70.0	NM_024273	76916.0	Mm.132231	NM_024273	ENSMUSG00000002846	Timmdc1	2810021C21Rik|4930455C21Rik|AV135763	translocase of inner mitochondrial membrane domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-63294924-1	chr13	63294824	63295024	+	744.0	f1_balb.idr	intron (NR_045794, intron 1 of 2)	intron (NR_045794, intron 1 of 2)	2223.0	NR_045794	100504114.0	Mm.437070	NR_045794	ENSMUSG00000097242	Gm16907	-	predicted gene, 16907	ncRNA	-0.0194130469699466	-0.00260160932254083	0.449622043385206	-0.0123523623894877	0.63760308878538	0.502139866684692	-0.006889838236663	-0.0116099130642349	1.46161782937196	0.518570102062014	1
Merged-chr1-184395414-2	chr1	184395314	184395514	+	813.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	162277.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-119336271-2	chr9	119336168	119336368	+	827.333374	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010851, exon 6 of 6)	3' UTR (NM_010851, exon 6 of 6)	3772.0	NM_010851	17874.0	Mm.213003	NM_010851	ENSMUSG00000032508	Myd88	-	myeloid differentiation primary response gene 88	protein-coding	-1.03819355380701	-0.834551289142998	-1.03041594794719	-1.03472428932238	-0.462184727950664	-1.01617540188201	-1.02776637415553	-1.03435876622025	1.79283192538855	0.57180840804196	1
Merged-chr3-8971834-4	chr3	8971730	8971930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009412, intron 1 of 5)	MLT1J1|LTR|ERVL-MaLR	-7684.0	NM_001025261	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	4.094962306919	3.75946780630457	2.26286696901954	3.45495348066503	3.0413719905205	3.32095733808618	3.31132536645601	4.56899434267889	0.241624920468935	0.703763437750701	0.998431161219273
Merged-chr7-92636675-1	chr7	92636575	92636775	+	1000.0	f0_balb.idr	5' UTR (NM_028665, exon 1 of 12)	5' UTR (NM_028665, exon 1 of 12)	467.0	NM_028665	73845.0	Mm.73248	NM_028665	ENSMUSG00000041343	Ankrd42	4931426M20|4933417L02Rik|Ikbn	ankyrin repeat domain 42	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-66323612-2	chr8	66323512	66323712	+	702.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175188, intron 4 of 7)	intron (NM_175188, intron 4 of 7)	-62689.0	NM_001166375	72925.0	Mm.380457	NM_175188	ENSMUSG00000036469	March1	2900024D24Rik|BB085186	membrane-associated ring finger (C3HC4) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-30204571-4	chr6	30204453	30204653	+	909.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	27930.0	NR_038124	100463519.0	Mm.361139	NR_038124		BB283400	BF465573|Rncr4	expressed sequence BB283400	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-20921234-4	chr12	20921084	20921284	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-105405.0	NR_015521	69513.0	Mm.273972	NR_015521	ENSMUSG00000099759	1700030C10Rik	-	RIKEN cDNA 1700030C10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-121169918-3	chr2	121169730	121169930	+	880.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001290819, exon 1 of 5)	exon (NM_001290819, exon 1 of 5)	1295.0	NM_001290819	99334.0	Mm.188422	NM_178889	ENSMUSG00000050619	Zscan29	AW125441|Zfp690	zinc finger SCAN domains 29	protein-coding	-0.868200281806746	-0.996496491336938	-1.00853288953665	-0.368821712930239	-1.01475329110817	-0.993888153636026	-1.00580811281457	-1.01127002736351	-2.90325356872352	0.34781365862981	1
Merged-chr11-120483180-2	chr11	120483080	120483280	+	550.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159328, intron 21 of 21)	intron (NM_001159328, intron 21 of 21)	-1457.0	NM_027204	56282.0	Mm.133851	NM_027204	ENSMUSG00000039640	Mrpl12	0610034O11Rik|1500031N16Rik|L12mt|MRP-L12|Rpml12	mitochondrial ribosomal protein L12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-107098879-4	chr3	107098780	107098980	+	933.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2687.0	NM_008417	16490.0	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-25736799-4	chr14	25736701	25736901	+	960.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001101433, intron 2 of 3)	intron (NM_001101433, intron 2 of 3)	32055.0	NM_001101433	71918.0	Mm.41904	NM_001101433	ENSMUSG00000055538	Zcchc24	2310047A01Rik	zinc finger, CCHC domain containing 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-57301847-1	chr4	57301747	57301947	+	543.0	f0_balb.idr	promoter-TSS (NM_011207)	promoter-TSS (NM_011207)	-10.0	NM_011207	545622.0	Mm.246552	NM_011207	ENSMUSG00000038764	Ptpn3	9530011I20Rik|PTP-H1|PTPCL	protein tyrosine phosphatase, non-receptor type 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-69587013-2	chr2	69586913	69587113	+	634.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081088)	promoter-TSS (NM_001081088)	-946.0	NM_001081088	14725.0	Mm.23847	NM_001081088	ENSMUSG00000027070	Lrp2	AI315343|AW536255|D230004K18Rik|Gp330|Megalin|b2b1625.2Clo	low density lipoprotein receptor-related protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-114772886-6	chr5	114772759	114772959	+	927.388916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_027872)	TTS (NR_027872)	632.0	NM_019834	26431.0	Mm.195632	NM_019834	ENSMUSG00000041890	Git2	1500036H07Rik|5830420E16Rik|6430510B20Rik|9630056M03Rik|B230104M05Rik|CAT2|mKIAA0148	G protein-coupled receptor kinase-interactor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-94239334-4	chr16	94239243	94239443	+	977.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360045, intron 5 of 10)	intron (NM_001360045, intron 5 of 10)	50948.0	NM_001360045	110948.0	Mm.30921	NM_139145	ENSMUSG00000040820	Hlcs	410I21.SP6|D16Jhu34	holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166304762-3	chr2	166304675	166304875	+	890.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30867.0	NR_033467	670775.0	Mm.384326	NR_033467	ENSMUSG00000084840	Gm11468	-	predicted gene 11468	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-82991514-4	chr6	82991368	82991568	+	804.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033079, intron 4 of 9)	intron (NM_033079, intron 4 of 9)	42003.0	NM_010070	13448.0	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-36561666-2	chr5	36561566	36561766	+	609.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133910, intron 2 of 13)	MER3|DNA|hAT-Charlie	20731.0	NM_133910	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	-1.56355737717652	-1.81244775989375	-1.82128546162293	-1.82854501295842	-1.83962066705452	-1.81053259306168	-1.81928479966835	-1.82724555674025	-1.28500227969968	0.715751224811686	1
Merged-chr8-119422237-3	chr8	119422146	119422346	+	967.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14916.0	NM_027950	71839.0	Mm.272357	NM_027950	ENSMUSG00000074063	Osgin1	1700012B18Rik|Okl38	oxidative stress induced growth inhibitor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-54703478-2	chr11	54703378	54703578	+	997.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	84225.0	NM_178626	72729.0	Mm.29476	NM_178626	ENSMUSG00000052298	Cdc42se2	2810404F18Rik|AA408783|AA536669|SPEC2	CDC42 small effector 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-122138864-4	chr9	122138753	122138953	+	964.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357775, intron 4 of 7)	L1M5|LINE|L1	21394.0	NM_001357776	20623.0	Mm.257989	NM_133741	ENSMUSG00000038145	Snrk	2010012F07Rik|AI448042|AW547029|E030034B15|R74830|mKIAA0096	SNF related kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-62648050-2	chr11	62647950	62648150	+	840.099976	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175002)	promoter-TSS (NM_175002)	-1.0	NM_001357955	192976.0	Mm.339972	NM_198861	ENSMUSG00000046417	Lrrc75a	Fam211a	leucine rich repeat containing 75A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-25282512-4	chr15	25282413	25282613	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	131251.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-125778056-3	chr8	125777937	125778137	+	626.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175561, intron 25 of 33)	RLTR26B_MM|LTR|ERVK	43834.0	NM_001310688	66566.0	Mm.25296	NM_025636	ENSMUSG00000031851	Ntpcr	2310079N02Rik|AI449709	nucleoside-triphosphatase, cancer-related	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-25188850-2	chr12	25188750	25188950	+	632.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	59676.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-56566190-4	chr19	56566064	56566264	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025811, intron 2 of 10)	intron (NM_025811, intron 2 of 10)	17903.0	NM_025811	66866.0	Mm.46346	NM_025811	ENSMUSG00000025078	Nhlrc2	1200003G01Rik|AI835049|AV002846|AW496455	NHL repeat containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-21947574-4	chr16	21947471	21947671	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025693)	promoter-TSS (NM_025693)	-19.0	NR_037773	66664.0	Mm.46480	NM_025693	ENSMUSG00000022856	Tmem41a	2900010K02Rik|5730578N08Rik	transmembrane protein 41a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-123253036-2	chr9	123252937	123253137	+	889.9166869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7752.0	NM_001002267	72309.0	Mm.8569	NM_001002267	ENSMUSG00000054871	Tmem158	2310037P21Rik|Ris1	transmembrane protein 158	protein-coding	0.26112285594644	0.283598449676943	0.276273152924266	0.926069448654797	0.858971721124368	0.931508029659821	0.277891827386096	0.446571172026146	1.05056586410699	0.583827339591745	1
Merged-chr12-85705519-7	chr12	85705414	85705614	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016767, intron 2 of 2)	intron (NM_016767, intron 2 of 2)	18794.0	NM_016767	53314.0	Mm.6672	NM_016767	ENSMUSG00000034266	Batf	B-ATF|SFA-2	basic leucine zipper transcription factor, ATF-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70055741-2	chr14	70055641	70055841	+	818.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_028560, intron 6 of 6)	intron (NM_028560, intron 6 of 6)	-21704.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81864014-1	chr15	81863914	81864114	+	1000.0	f1_balb.idr	TTS (NM_026737)	TTS (NM_026737)	-5688.0	NM_020507	57259.0	Mm.323595	NM_020507	ENSMUSG00000048546	Tob2	2900090N22Rik|4930545K18Rik|AV071822|mKIAA1663	transducer of ERBB2, 2	protein-coding	-0.204553346639898	-0.191252597611158	-0.0249942843199823	-0.0407588236776446	-0.0631790158674672	-0.190265856429699	-0.0205008142209006	0.502337942229416	1.93258687393547	0.37198601714102	1
Merged-chr6-41892134-2	chr6	41892034	41892234	+	557.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31795.0	NM_032542	84543.0	Mm.138766	NM_032542	ENSMUSG00000014104	Sval2	SLP-M	seminal vesicle antigen-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65434373-2	chr9	65434273	65434473	+	979.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-1409.0	NM_027134	69606.0	Mm.287956	NM_027134	ENSMUSG00000059183	Mtfmt	2310020P08Rik	mitochondrial methionyl-tRNA formyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-55465388-2	chr12	55465288	55465488	+	646.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27259.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-87470924-1	chr14	87470824	87471024	+	741.0	f1_c57bl6.idr	intron (NM_001253755, intron 3 of 11)	intron (NM_001253755, intron 3 of 11)	54341.0	NM_001253755	219249.0	Mm.35168	NM_172605	ENSMUSG00000022019	Tdrd3	4732418C03Rik|6720468N18	tudor domain containing 3	protein-coding	0.404443408436785	2.35289439482422	2.2504555128432	0.717125145033242	0.409569757602995	0.485416075462102	0.462078835977778	0.723052520898963	-4.60662746470704	0.0043948753496295	0.0605161221631845
Merged-chr2-167742678-4	chr2	167742575	167742775	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB5|LINE|L1	51498.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-49051089-3	chr9	49050988	49051188	+	877.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR49|LTR|ERVK	-4493.0	NM_012039	26951.0	Mm.24791	NM_012039	ENSMUSG00000032264	Zw10	6330566F14Rik|MmZw10	zw10 kinetochore protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-84188651-4	chr17	84188556	84188756	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001001806)	promoter-TSS (NM_001001806)	-709.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-25016847-4	chr17	25016748	25016948	+	976.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_134126, exon 1 of 30)	5' UTR (NM_134126, exon 1 of 30)	762.0	NM_134126	106633.0	Mm.32802	NM_134126	ENSMUSG00000024169	Ift140	AI661311|Tce5|Wdtc2|mKIAA0590	intraflagellar transport 140	protein-coding	3.48090728270101	3.58205177756877	3.07416724148987	3.78274853757373	2.95644612763674	3.5188464620482	3.7201800808943	3.54086071654071	-0.0740659639431022	0.891798885238253	0.998431161219273
Merged-chr12-80110844-2	chr12	80110728	80110928	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007564, intron 1 of 1)	intron (NM_007564, intron 1 of 1)	2185.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	0.749274919000008	0.499341271880241	1.17477378794241	0.484954336752533	0.971204913016651	0.50116587960746	1.08373405975608	0.801964103002469	0.487485176998323	0.768889425768747	1
Merged-chr14-21813431-4	chr14	21813340	21813540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18121.0	NM_011695	22334.0	Mm.262327	NM_011695	ENSMUSG00000021771	Vdac2	Vdac6|mVDAC2|mVDAC6	voltage-dependent anion channel 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-106426991-2	chr9	106426875	106427075	+	718.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-2436.0	NM_001324533	19944.0	Mm.288696	NM_009082	ENSMUSG00000048758	Rpl29	Rpl43	ribosomal protein L29	protein-coding	-1.50561175621786	-1.47331375025452	-1.02203377115094	-1.49110398925286	-1.50334449591826	-1.47119716082604	-1.48086985756939	-1.48966786617048	-2.07776723614574	0.550394407909386	1
Merged-chr13-5726281-6	chr13	5726222	5726422	+	948.055542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	131770.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99980217-6	chr7	99980004	99980204	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175388, exon 1 of 6)	exon (NM_175388, exon 1 of 6)	354.0	NM_175388	108937.0	Mm.323087	NM_175388	ENSMUSG00000058761	Rnf169	2900057K09Rik	ring finger protein 169	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171329277-7	chr1	171329206	171329406	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357552)	promoter-TSS (NM_001357552)	161.0	NM_011615	21945.0	Mm.270139	NM_011615	ENSMUSG00000013973	Dedd	CASP8IP1|DEFT|Dedpro1|FLDED1|KE05	death effector domain-containing	protein-coding	4.33010840524876	4.46223142459914	3.60357787221062	4.2605780922082	4.84252715810026	4.59999966954981	4.11089174591485	4.11304478111322	0.334447087289948	0.428122879918948	0.903062291362085
Merged-chr13-52596889-4	chr13	52596791	52596991	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011518)	promoter-TSS (NM_011518)	9.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-104408697-4	chr9	104408645	104408845	+	993.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17368.0	NR_035516	100316725.0		NR_035516	ENSMUSG00000089406	Mir2136	mmu-mir-2136	microRNA 2136	ncRNA	3.54130054200301	2.54831357314299	4.15512043332918	4.16131922584213	5.53246138025057	4.72888721149727	5.13298884623412	5.11823407305647	1.78311247095524	3.7816035090736e-05	0.00139462127772126
Merged-chr11-68471208-2	chr11	68471108	68471308	+	688.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177320, intron 1 of 18)	RMER13A2|LTR|ERVK	-31811.0	NM_001004435	104709.0	Mm.234573	NM_001004435	ENSMUSG00000046207	Pik3r6	BB220380|p84|p84 PIKAP|p87(PIKAP)|p87PIKAP	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-136414488-2	chr1	136414388	136414588	+	564.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026500)	promoter-TSS (NM_026500)	-783.0	NM_026500	67997.0	Mm.385462	NM_026500	ENSMUSG00000026404	Ddx59	1210002B07Rik|4833411G06Rik	DEAD (Asp-Glu-Ala-Asp) box polypeptide 59	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-130044304-4	chr5	130044182	130044382	+	987.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007761, intron 4 of 5)	intron (NM_007761, intron 4 of 5)	14976.0	NM_007761	12909.0	Mm.18072	NM_007761	ENSMUSG00000025532	Crcp	AL022669	calcitonin gene-related peptide-receptor component protein	protein-coding	2.40021088623193	2.6935712105473	1.62150621415111	1.58300711509876	2.3298224996176	2.23947271544392	2.29912970559006	2.78572889540096	0.594013521769759	0.504285503563266	0.940284522133039
Merged-chr14-76330183-4	chr14	76330101	76330301	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	78739.0	NR_152108	72893.0	Mm.233565	NR_152108		2900040C04Rik	-	RIKEN cDNA 2900040C04 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-43440397-2	chr15	43440297	43440497	+	793.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_046064, intron 1 of 2)	Lx4A|LINE|L1	36639.0	NR_046064	100038728.0	Mm.244168	NR_046064	ENSMUSG00000072592	Gm10373	-	predicted gene 10373	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-117874055-2	chr5	117873955	117874155	+	585.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008712, intron 1 of 27)	intron (NM_008712, intron 1 of 27)	7216.0	NM_008712	18125.0	Mm.44249	NM_008712	ENSMUSG00000029361	Nos1	2310005C01Rik|N-NOS|NC-NOS|NO|NOS|NOS-I|Nos-1|bNOS|nNOS	nitric oxide synthase 1, neuronal	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-107463588-2	chr11	107463488	107463688	+	613.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 1 of 9)	intron (NR_153311, intron 1 of 9)	7132.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-21419402-4	chr10	21419315	21419515	+	955.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	42115.0	NM_178713	237320.0	Mm.90181	NM_178713	ENSMUSG00000037542	Aldh8a1	Raldh4	aldehyde dehydrogenase 8 family, member A1	protein-coding	2.63229381223355	2.65355408847617	1.86507697286567	2.5664077960441	1.99234835807401	1.76014282627129	1.23725073296607	1.45303206306588	-2.13174415238974	0.0294983695072042	0.234488584814997
Merged-chr8-25132754-2	chr8	25132654	25132854	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER4A|LTR|ERVK	26479.0	NR_106187	102467006.0		NR_106187	ENSMUSG00000099142	Mir8108	Gm27484|mmu-mir-8108	microRNA 8108	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-7055023-2	chr19	7054923	7055123	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	-1745.0	NM_134147	107227.0	Mm.439977	NM_134147	ENSMUSG00000036278	Macrod1	AI604841|AW743046|D930010J01Rik|Lrp16	MACRO domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129261329-4	chr2	129261220	129261420	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35892.0	NM_181589	70466.0	Mm.45785	NM_181589	ENSMUSG00000048327	Ckap2l	2010016H04Rik|2610318C08Rik|AV070319|radmis|rdm	cytoskeleton associated protein 2-like	protein-coding	1.26804718139518	1.16623388432124	0.768532992753143	1.44841968838712	1.27964086785618	0.782750066700937	1.60978657822626	0.945428129727617	0.0559183721018155	0.968025923553043	0.998431161219273
Merged-chr11-74826343-4	chr11	74826226	74826426	+	986.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4598.0	NM_010813	17428.0	Mm.3759	NM_010813	ENSMUSG00000000282	Mnt	Rox|bHLHd3	max binding protein	protein-coding	2.95057690902463	2.26026957404412	1.47636076101816	1.92657099282196	3.11145932826192	2.86334004992171	3.06239731918807	3.60822433116575	1.70075624231296	0.0299303032601518	0.236667692343125
Merged-chr11-103225056-2	chr11	103224956	103225156	+	696.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_016896, exon 13 of 16)	exon (NM_016896, exon 13 of 16)	-6624.0	NM_177801	328019.0	Mm.189646	NM_177801	ENSMUSG00000044787	Spata32	4933400C05Rik|VAD1.2	spermatogenesis associated 32	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-110957210-4	chr12	110957113	110957313	+	825.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175336, intron 18 of 20)	L1MB7|LINE|L1	21405.0	NM_001361917	74251.0	Mm.250989	NM_175207	ENSMUSG00000037904	Ankrd9	2500003O20Rik	ankyrin repeat domain 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-29292965-4	chr13	29292847	29293047	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131896, intron 15 of 16)	RSINE1|SINE|B4	276692.0	NR_045075	77920.0	Mm.197051	NR_045073	ENSMUSG00000086363	A330102I10Rik	-	RIKEN cDNA A330102I10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-146794252-4	chr5	146794158	146794358	+	980.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011669, intron 1 of 8)	(CCCCAG)n|Simple_repeat|Simple_repeat	698.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-122581885-4	chr2	122581785	122581985	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	29392.0	NM_025961	67092.0	Mm.29975	NM_025961	ENSMUSG00000027199	Gatm	1810003P21Rik|AI314789|AT	glycine amidinotransferase (L-arginine:glycine amidinotransferase)	protein-coding	2.59287441307436	1.55050833336161	3.88500343769565	3.37255289802803	2.61702479530075	1.56362755543884	3.91370874996652	3.39006768377788	0.0369746385593271	0.978987110774533	0.998431161219273
Merged-chr1-94721221-4	chr1	94721131	94721331	+	941.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-76211.0	NR_040473	74689.0	Mm.399187	NR_040473	ENSMUSG00000100518	4930440C22Rik	-	RIKEN cDNA 4930440C22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-3106279-2	chr11	3106179	3106379	+	730.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPLTR3-int|LTR|ERVK	-17742.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-99667445-4	chr6	99667338	99667538	+	924.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025829)	promoter-TSS (NM_025829)	-667.0	NM_025829	66892.0	Mm.32889	NM_025829	ENSMUSG00000093661	Eif4e3	1300018P11Rik|AI451927|eIF4E-3	eukaryotic translation initiation factor 4E member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-65694921-3	chr18	65694818	65695018	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3350.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-85624672-1	chr1	85624572	85624772	+	910.0	f1_balb.idr	intron (NM_001013817, intron 7 of 16)	intron (NM_001013817, intron 7 of 16)	-20781.0	NM_175397	109032.0	Mm.335802	NM_030194	ENSMUSG00000070034	Sp110	5031415C07Rik|52kDa|5830484A20Rik|Ifi75|Ipr1	Sp110 nuclear body protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-53277193-2	chr19	53277093	53277293	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21988.0	NR_036590	69319.0	Mm.57452	NR_036590		1700001K23Rik	-	RIKEN cDNA 1700001K23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-77468002-4	chr11	77467906	77468106	+	929.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139130, intron 5 of 9)	CpG	4093.0	NM_139130	216961.0	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-106630621-2	chr1	106630521	106630721	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009741, intron 1 of 1)	intron (NM_009741, intron 1 of 1)	83669.0	NM_009741	12043.0	Mm.257460	NM_009741	ENSMUSG00000057329	Bcl2	AW986256|Bcl-2|C430015F12Rik|D630044D05Rik|D830018M01Rik	B cell leukemia/lymphoma 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-80119096-4	chr18	80118985	80119185	+	904.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_053117, exon 3 of 3)	3' UTR (NM_053117, exon 3 of 3)	32397.0	NM_175028	240442.0	Mm.26594	NM_175028	ENSMUSG00000053950	Adnp2	8430420L05Rik|BC024969|Kiaa0863|Zfp508|mKIAA0863	ADNP homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-16059920-4	chr1	16059831	16060031	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33394.0	NM_001243238	75799.0	Mm.78557	NM_001243238	ENSMUSG00000067795	4930444P10Rik	-	RIKEN cDNA 4930444P10 gene	protein-coding	3.33137761435645	3.40331821633588	3.37620569967406	3.57156361956264	3.59745763491879	2.85407742892283	2.00505623949075	3.65180074972425	-0.361272518481392	0.570119459116283	0.962718661854691
Merged-chr7-126978274-2	chr7	126978174	126978374	+	660.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_026638, exon 3 of 6)	exon (NM_026638, exon 3 of 6)	2360.0	NM_001347656	52858.0	Mm.28219	NM_026638	ENSMUSG00000030682	Cdipt	9530042F15Rik|D7Bwg0575e|Pis|Pis1	CDP-diacylglycerol--inositol 3-phosphatidyltransferase (phosphatidylinositol synthase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-64511742-2	chr18	64511642	64511842	+	823.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_001142950, intron 4 of 14)	intron (NM_001142950, intron 4 of 14)	4815.0	NM_027350	70223.0	Mm.29192	NM_027350	ENSMUSG00000024587	Nars	3010001M15Rik|AA960128|ASNRS|C78150	asparaginyl-tRNA synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-66866148-3	chr15	66866063	66866263	+	776.788879	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25230.0	NM_018865	22402.0	Mm.10222	NM_018865	ENSMUSG00000005124	Wisp1	AW146261|CCN4|Elm1	WNT1 inducible signaling pathway protein 1	protein-coding	2.91244494319145	4.05637279440981	3.57385783793335	2.10947386070203	2.93762093435999	2.95777971521485	2.97755150635509	3.62322482819119	-0.308933893681749	0.646715072299092	0.984490176318369
Merged-chr7-92878175-2	chr7	92878075	92878275	+	667.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028243, intron 1 of 8)	B4A|SINE|B4	2922.0	NM_028243	72461.0	Mm.389969	NM_028243	ENSMUSG00000061119	Prcp	2510048K03Rik|2610104A14Rik|AI451719|HUMPCP|PCP	prolylcarboxypeptidase (angiotensinase C)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-29244736-2	chr6	29244636	29244836	+	751.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-27752.0	NM_001190461	69573.0	Mm.45161	NM_023516	ENSMUSG00000043421	Hilpda	2310016C08Rik|AW049004|Hig2	hypoxia inducible lipid droplet associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-29848962-4	chr17	29848888	29849088	+	950.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081160, intron 6 of 15)	intron (NM_001081160, intron 6 of 15)	38894.0	NM_001081160	74762.0	Mm.40901	NM_001081160	ENSMUSG00000043557	Mdga1	1200011I03Rik|GPIM|Mamdc3	MAM domain containing glycosylphosphatidylinositol anchor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41301697-1	chr19	41301597	41301797	+	801.0	f1_c57bl6.idr	intron (NM_031376, intron 10 of 16)	ID_B1|SINE|B4	-37693.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	2.33604650572378	1.38162979084795	2.90072794906691	2.46678587735063	2.25249420130979	1.38992040852807	2.44908136662037	3.10056002693872	0.128835603329543	0.893673055668189	0.998431161219273
Merged-chr12-91637642-4	chr12	91637534	91637734	+	880.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_175367, exon 7 of 7)	3' UTR (NM_175367, exon 7 of 7)	-47147.0	NM_175335	83602.0	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101548993-4	chr7	101548898	101549098	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6804.0	NM_007490	11871.0	Mm.439746	NM_007490	ENSMUSG00000092517	Art2a-ps	ARTC2|Art2a|Ly92a|Rt-6|Rt6|Rt6-1	ADP-ribosyltransferase 2a, pseudogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4182762-2	chr19	4182662	4182862	+	600.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-7283.0	NM_134148	107239.0	Mm.482310	NM_134148	ENSMUSG00000075289	Carns1	AI790298|Atpgd1|mKIAA1394	carnosine synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134823246-1	chr6	134823146	134823346	+	597.0	f1_c57bl6.idr	Intergenic	URR1A|DNA|hAT-Charlie	-6953.0	NM_177687	232430.0	Mm.267010	NM_177687	ENSMUSG00000032652	Crebl2	AI046348|B230205M03	cAMP responsive element binding protein-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-130867440-4	chr7	130867331	130867531	+	899.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133942, intron 1 of 9)	intron (NM_133942, intron 1 of 9)	1707.0	NM_001346515	101476.0	Mm.323554	NM_133942	ENSMUSG00000040268	Plekha1	AA960558|C920009D07Rik|TAPP1	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-95017270-1	chr8	95017170	95017370	+	548.0	f1_c57bl6.idr	promoter-TSS (NM_173036)	promoter-TSS (NM_173036)	-422.0	NM_173036	54672.0	Mm.27995	NM_173036	ENSMUSG00000060470	Adgrg3	A030001G24Rik|AW214383|Gpr97|Pb1|Pb99	adhesion G protein-coupled receptor G3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-181233487-2	chr1	181233387	181233587	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-21509.0	NM_145514	226757.0	Mm.289082	NM_145514	ENSMUSG00000038733	Wdr26	1600024A01Rik|AA693241|AI447817|AU044014|C77982|Gid7	WD repeat domain 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-31087855-2	chr2	31087755	31087955	+	561.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355105, intron 4 of 15)	intron (NM_001355105, intron 4 of 15)	8645.0	NM_001177650	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124480471-4	chr6	124480371	124480571	+	846.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER20|DNA|hAT-Charlie	-12642.0	NM_181344	232371.0	Mm.132974	NM_181344	ENSMUSG00000038527	C1rl	C1r-LP|C1rl1|C1rlp	complement component 1, r subcomponent-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-38255134-2	chr3	38255034	38255234	+	802.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB5|LINE|L1	-47015.0	NR_040541	71342.0	Mm.410782	NR_040541	ENSMUSG00000106002	5430434I15Rik	-	RIKEN cDNA 5430434I15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-146150681-2	chr3	146150581	146150781	+	784.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001005846, intron 1 of 13)	intron (NM_001005846, intron 1 of 13)	507.0	NM_001005846	68279.0	Mm.116862	NM_026656	ENSMUSG00000011008	Mcoln2	3300002C04Rik|AI549968|C86638|TRPML2	mucolipin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-4240489-3	chr11	4240397	4240597	+	838.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001013365, exon 3 of 3)	3' UTR (NM_001013365, exon 3 of 3)	3712.0	NM_001013365	18413.0	Mm.131422	NM_001013365	ENSMUSG00000058755	Osm	OncoM	oncostatin M	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-181274913-4	chr2	181274831	181275031	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198169, intron 2 of 9)	MTEb|LTR|ERVL-MaLR	13035.0	NM_198169	229004.0	Mm.220423	NM_198169	ENSMUSG00000038705	Gmeb2	AI839884	glucocorticoid modulatory element binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-183980876-2	chr1	183980776	183980976	+	571.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53122.0	NM_028516	73363.0	Mm.50115	NM_028516	ENSMUSG00000044854	1700056E22Rik	-	RIKEN cDNA 1700056E22 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-25091300-4	chr8	25091207	25091407	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031257, intron 1 of 11)	intron (NM_031257, intron 1 of 11)	10504.0	NM_031257	83436.0	Mm.261122	NM_031257	ENSMUSG00000031557	Plekha2	6430512N22Rik|AI851530|AU041791|TAPP2|W91773	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-37018661-4	chr19	37018555	37018755	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	92576.0	NM_001080706	107182.0	Mm.295062	NM_001080706	ENSMUSG00000040565	Btaf1	AI414500|AI447930|E430027O22Rik|TAF170	B-TFIID TATA-box binding protein associated factor 1	protein-coding	-0.231979815002188	0.112641300588149	0.0722604862743738	-0.36151066935664	-0.228204759191022	-0.354083422688456	-0.357829375853328	-0.361011527317569	-2.60330771710607	0.270416640690068	1
Merged-chr17-92817289-2	chr17	92817189	92817389	+	576.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-381728.0	NM_001315503	11516.0	Mm.3407	NM_009625	ENSMUSG00000024256	Adcyap1	PACAP	adenylate cyclase activating polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-99380400-4	chr5	99380306	99380506	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 2 of 3)	intron (NR_030692, intron 2 of 3)	-127479.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-151703053-4	chr1	151702945	151703145	+	951.866699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022018, intron 9 of 13)	intron (NM_022018, intron 9 of 13)	51682.0	NR_151474	102640772.0		NR_151473	ENSMUSG00000100594	2810414N06Rik	-	RIKEN cDNA 2810414N06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135898283-2	chr5	135898183	135898383	+	635.6999509999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10364.0	NM_013560	15507.0	Mm.13849	NM_013560	ENSMUSG00000004951	Hspb1	27kDa|Hsp25	heat shock protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-39944029-4	chr15	39943912	39944112	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172814)	promoter-TSS (NM_172814)	-18.0	NM_172814	239393.0	Mm.39874	NM_172814	ENSMUSG00000022305	Lrp12	AI848829|C820005L12Rik|LRP-12	low density lipoprotein-related protein 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-108997550-2	chr8	108997450	108997650	+	727.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60690.0	NR_037295	100526511.0		NR_037295	ENSMUSG00000093241	Mir3108	mir-3108|mmu-mir-3108	microRNA 3108	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-112034876-4	chr8	112034762	112034962	+	883.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23503.0	NM_020584	57321.0	Mm.213064	NM_020584	ENSMUSG00000033430	Terf2ip	Rap1	telomeric repeat binding factor 2, interacting protein	protein-coding	1.19149344693234	1.06044357269488	1.90351372674916	2.22500581206873	1.51759470875734	1.06540212614505	2.03319333359768	2.23750917691959	0.276490483830379	0.817281838272051	0.998431161219273
Merged-chr12-91735404-2	chr12	91735304	91735504	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 3 of 6)	MLT1D|LTR|ERVL-MaLR	51032.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10258534-3	chr19	10258430	10258630	+	830.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198114, intron 9 of 19)	intron (NM_198114, intron 9 of 19)	-17782.0	NM_001033481	225908.0	Mm.329716	NM_001033481	ENSMUSG00000036098	Myrf	6030439E18|Gm1804|Gm98|Mrf	myelin regulatory factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-27668203-2	chr15	27668103	27668303	+	699.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198301, intron 1 of 6)	intron (NM_198301, intron 1 of 6)	13339.0	NM_001242424	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-70659870-4	chr13	70659753	70659953	+	850.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22219.0	NM_144837	218333.0	Mm.139738	NM_144837	ENSMUSG00000034525	Ice1	C77245|mKIAA0947	interactor of little elongation complex ELL subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-5244793-1	chr15	5244693	5244893	+	573.0	f0_balb.idr	promoter-TSS (NM_008965)	promoter-TSS (NM_008965)	-606.0	NM_008965	19219.0	Mm.18509	NM_008965	ENSMUSG00000039942	Ptger4	EP4|Ptgerep4	prostaglandin E receptor 4 (subtype EP4)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-76118615-3	chr5	76118520	76118720	+	544.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21653.0	NM_020611	57357.0	Mm.289446	NM_020611	ENSMUSG00000029233	Srd5a3	1110025P14Rik|A430076C09|AV364670|AW987574|D730040M03Rik|H5ar|S5AR 3|Srd5a2l	steroid 5 alpha-reductase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-40955350-3	chr15	40955254	40955454	+	898.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356998, intron 4 of 6)	intron (NM_001356998, intron 4 of 6)	-218347.0	NR_151516	100418302.0		NR_151516		4930555K19Rik	-	leucine rich repeat and sterile alpha motif containing 1 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-7222752-4	chr9	7222653	7222853	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38248.0	NM_029775	76863.0	Mm.27293	NM_029775	ENSMUSG00000032002	Dcun1d5	3110001A18Rik|4833420K19Rik|AW060460|D430047L21Rik	DCN1, defective in cullin neddylation 1, domain containing 5 (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-25267885-2	chr15	25267785	25267985	+	944.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	145879.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-119911062-4	chr8	119910894	119911094	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009462, intron 1 of 13)	CpG	634.0	NM_001310630	22224.0	Mm.256910	NM_009462	ENSMUSG00000031826	Usp10	2610014N07Rik|UBPO|Uchrp|mKIAA0190	ubiquitin specific peptidase 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-55722456-4	chr17	55722357	55722557	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR25C|LTR|ERVK	-9821.0	NR_151542	72836.0	Mm.177073	NM_028370	ENSMUSG00000024174	Pot1b	2810458H16Rik	protection of telomeres 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-57058399-2	chr17	57058299	57058499	+	801.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_025877, intron 1 of 9)	intron (NM_025877, intron 1 of 9)	1464.0	NM_025877	66972.0	Mm.23720	NM_025877	ENSMUSG00000046329	Slc25a23	2310067G05Rik|SCaMC-3	solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26233096-3	chr17	26233003	26233203	+	890.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001206335, intron 1 of 12)	B3|SINE|B2	11139.0	NM_207217	106581.0	Mm.28844	NM_207217	ENSMUSG00000024187	Fam234a	Itfg3	family with sequence similarity 234, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-59974820-3	chr10	59974739	59974939	+	953.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23069.0	NM_029083	74747.0	Mm.21697	NM_029083	ENSMUSG00000020108	Ddit4	5830413E08Rik|AA415483|REDD1|Rtp801|dig2	DNA-damage-inducible transcript 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-38672450-3	chr15	38672360	38672560	+	773.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025494, intron 1 of 12)	intron (NM_025494, intron 1 of 12)	10556.0	NM_025494	66335.0	Mm.276618	NM_025494	ENSMUSG00000022295	Atp6v1c1	1700025B18Rik|U13839	ATPase, H+ transporting, lysosomal V1 subunit C1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-108315802-2	chr8	108315702	108315902	+	884.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	268875.0	NR_077224	109215.0	Mm.65282	NR_077224	ENSMUSG00000110613	Lncbate1	3010033K07Rik|Lnc-BATE1	brown adipose tissue enriched long non-coding RNA 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3438574-2	chr12	3438474	3438674	+	842.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001270988, intron 1 of 11)	intron (NM_001270988, intron 1 of 11)	11717.0	NM_172421	75302.0	Mm.120475	NM_172421	ENSMUSG00000037486	Asxl2	4930556B16Rik|mKIAA1685	additional sex combs like 2, transcriptional regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-25446119-2	chr8	25446019	25446219	+	738.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A1|LTR|ERVL-MaLR	-72640.0	NM_001079909	14182.0	Mm.265716	NM_010206	ENSMUSG00000031565	Fgfr1	AW208770|Eask|FGFR-I|FLG|Fgfr-1|Flt-2|Hspy|MFR|bFGF-R-1|c-fgr	fibroblast growth factor receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-114979276-3	chr5	114979096	114979296	+	943.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-8134.0	NM_009327	21405.0	Mm.332607	NM_009327	ENSMUSG00000029556	Hnf1a	AI323641|HNF1|HNF1-alpha|HNF1[a]|Hnf-1|Hnf1alpha|LFB1|Tcf-1|Tcf1	HNF1 homeobox A	protein-coding	1.85049242479718	1.97636833353361	2.01473050140927	1.06490447760874	1.65883843967162	1.71850235099998	2.03147553537409	1.06775298359697	-0.34399737715988	0.767858826171227	0.998431161219273
Merged-chr4-132792436-2	chr4	132792336	132792536	+	694.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033308, intron 2 of 5)	intron (NM_001033308, intron 2 of 5)	3928.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-158413453-4	chr2	158413351	158413551	+	932.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291137, intron 1 of 30)	intron (NM_001291137, intron 1 of 30)	3598.0	NM_001291138	228850.0	Mm.398185	NM_177227	ENSMUSG00000027652	Ralgapb	AI507211|B230339M05Rik|p170	Ral GTPase activating protein, beta subunit (non-catalytic)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-67788258-3	chr15	67788147	67788347	+	914.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	470609.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	2.71310763621041	1.57651388853485	3.88978227736507	2.50521748092141	3.58118026250854	2.36255552361179	3.96729680790137	2.51961035821541	0.554843300801509	0.490865669727049	0.934345795476137
Merged-chr9-78522040-4	chr9	78521934	78522134	+	922.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RodERV21-int|LTR|ERV1	-40310.0	NM_010106	13627.0	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5705088-4	chr19	5704999	5705199	+	972.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010609, intron 1 of 2)	intron (NM_010609, intron 1 of 2)	628.0	NM_010609	16530.0	Mm.440033	NM_010609	ENSMUSG00000024936	Kcnk7	2310014G03Rik|Kcnk6|Kcnk8|Knot|Mlk3	potassium channel, subfamily K, member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-72980493-4	chr2	72980406	72980606	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001018042)	promoter-TSS (NM_001018042)	-60.0	NM_001018042	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-6453952-5	chr4	6453835	6454035	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010945, intron 1 of 30)	CpG	336.0	NM_010945	18201.0	Mm.3059	NM_010945	ENSMUSG00000028245	Nsmaf	AA959567|C630007J05|Fan	neutral sphingomyelinase (N-SMase) activation associated factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-95888383-4	chr13	95888254	95888454	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027711, intron 1 of 35)	B1F|SINE|Alu	3568.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	5.71484819533346	5.79640484112344	5.70959236528394	5.21098205024682	5.87664370903898	5.57232525785576	5.97380080801683	5.78358591824058	0.211296323394469	0.41006227166556	0.893773852872119
Merged-chr16-17727389-4	chr16	17727285	17727485	+	994.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-4438.0	NM_001040683	94112.0	Mm.208970	NM_033609	ENSMUSG00000012114	Med15	A230074L19Rik|AW536074|Pcqap|mPcqap	mediator complex subunit 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-55936674-2	chr9	55936574	55936774	+	888.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357652, intron 1 of 32)	intron (NM_001357652, intron 1 of 32)	1445.0	NM_001357652	244891.0	Mm.86588	NM_175536	ENSMUSG00000034007	Scaper	C430017I08|D530014O03Rik|Zfp291	S phase cyclin A-associated protein in the ER	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80044430-4	chr7	80044307	80044507	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175433, intron 1 of 4)	intron (NM_175433, intron 1 of 4)	18179.0	NM_175433	209225.0	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-77738201-2	chr18	77738108	77738308	+	578.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4738.0	NR_155289	105246501.0	Mm.403904	NR_155289		A330094K24Rik	-	RIKEN cDNA A330094K24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-8322119-1	chr17	8322019	8322219	+	636.0	f1_c57bl6.idr	intron (NM_001357890, intron 6 of 8)	intron (NM_001357890, intron 6 of 8)	-11001.0	NR_073374	75060.0	Mm.426530	NR_073374	ENSMUSG00000087478	4930506C21Rik	-	RIKEN cDNA 4930506C21 gene	ncRNA	1.07619565006687	1.07930840194675	0.669850992418027	1.26245785040317	0.647591482527245	1.49508879928337	0.672447723870378	1.47419844453172	0.45893800764586	0.763659336138098	0.998431161219273
Merged-chr1-80614316-4	chr1	80614206	80614406	+	970.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175291, intron 4 of 55)	RLTR20A4|LTR|ERVK	51046.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-164075442-3	chr1	164075347	164075547	+	939.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164059, intron 6 of 7)	intron (NM_001164059, intron 6 of 7)	13371.0	NM_011346	20343.0	Mm.1461	NM_011346	ENSMUSG00000026581	Sell	AI528707|CD62L|L-selectin|LECAM-1|Lnhr|Ly-22|Ly-m22|Lyam-1|Lyam1	selectin, lymphocyte	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-31042065-4	chr9	31041948	31042148	+	729.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001115130, intron 1 of 5)	MTE-int|LTR|ERVL-MaLR	11404.0	NM_172765	235132.0	Mm.239355	NM_172765	ENSMUSG00000047412	Zbtb44	6030404E16Rik|Btbd15|E230011F09	zinc finger and BTB domain containing 44	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-64628306-1	chr11	64628206	64628406	+	664.666687	f0_balb.idr	Intergenic	L1MC4a|LINE|L1	-191632.0	NR_028445	654805.0	Mm.436132	NR_028445		F930015N05Rik	-	RIKEN cDNA F930015N05 gene	ncRNA	2.12179728902892	1.79789772977332	2.00448014955869	1.12727147462925	2.14019995008502	1.81115192492955	2.32898312925815	1.13062245878878	0.309643243926365	0.782501422857762	0.998431161219273
Merged-chr2-9881814-2	chr2	9881714	9881914	+	615.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_024257, exon 2 of 5)	non-coding (NR_024257, exon 2 of 5)	568.0	NR_024257	381347.0	Mm.441450	NR_024257		4930412O13Rik	Gm10853	RIKEN cDNA 4930412O13 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-36665133-6	chr16	36664963	36665163	+	952.2777710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019388, intron 1 of 7)	intron (NM_019388, intron 1 of 7)	1014.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-34583420-4	chr19	34583298	34583498	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010501)	promoter-TSS (NM_010501)	-131.0	NM_010501	15959.0	Mm.426079	NM_010501	ENSMUSG00000074896	Ifit3	Ifi49|P49	interferon-induced protein with tetratricopeptide repeats 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-127238200-1	chr6	127238100	127238300	+	633.0	f1_c57bl6.idr	Intergenic	L1_Mus1|LINE|L1	69767.0	NR_073373	232386.0	Mm.257367	NR_073373	ENSMUSG00000107153	Gm38404	D130058E03	predicted gene, 38404	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-145211727-4	chr6	145211622	145211822	+	981.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177222)	promoter-TSS (NM_177222)	575.0	NM_001362057	67636.0	Mm.486359	NM_133688	ENSMUSG00000040370	Etfrf1	4930469P12Rik|AL022899|Ghiso|Lyrm5	electron transfer flavoprotein regulatory factor 1	protein-coding	4.3118550398375	2.84992595140336	3.81005456580992	4.39950651893082	4.0076412613579	4.17124680365816	3.59987924868734	3.19760768599408	-0.259631796939201	0.626104319916431	0.980912176761026
Merged-chr11-85131791-4	chr11	85131678	85131878	+	984.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029934, intron 1 of 33)	intron (NM_001029934, intron 1 of 33)	8177.0	NM_001029934	237898.0	Mm.178524	NM_001029934	ENSMUSG00000000804	Usp32	2900074J03Rik|6430526O11Rik|AW045245	ubiquitin specific peptidase 32	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-53668560-1	chr15	53668460	53668660	+	1000.0	f0_balb.idr	intron (NM_177225, intron 3 of 4)	MLT1K|LTR|ERVL-MaLR	-54281.0	NR_039538	100628567.0		NR_039538	ENSMUSG00000104794	Mir28c	mmu-mir-28c	microRNA 28c	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150237867-4	chr4	150237735	150237935	+	739.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023119, intron 1 of 11)	intron (NM_023119, intron 1 of 11)	511.0	NM_001025388	433182.0	Mm.70666	NM_001025388	ENSMUSG00000059040	Eno1b	EG433182|Eno1|Gm5506	enolase 1B, retrotransposed	protein-coding	3.15169221026322	1.90423829023742	3.01653684653515	3.17754498716064	2.9678741002139	3.32259758015333	3.13047573083495	1.79741598796273	0.0181410660380714	0.980997371828103	0.998431161219273
Merged-chr14-45231507-5	chr14	45231400	45231600	+	889.8599849999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027518, intron 1 of 6)	intron (NM_027518, intron 1 of 6)	11783.0	NM_027518	70713.0	Mm.343793	NM_027518	ENSMUSG00000049092	Gpr137c	6330416L11Rik|Gm908|TM7SF1L2	G protein-coupled receptor 137C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-72318986-4	chr8	72318879	72319079	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008452)	promoter-TSS (NM_008452)	-83.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	5.35528651799139	5.25513689403957	5.36020982173839	5.59074968635042	4.74121298381215	4.3983638381342	4.85534457661374	5.34001419170397	-0.605355134662481	0.0557350445690063	0.347561883959947
Merged-chr3-27197007-1	chr3	27196907	27197107	+	553.0	f1_balb.idr	intron (NM_178772, intron 1 of 4)	ID_B1|SINE|B4	14003.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-117871729-4	chr5	117871625	117871825	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008712, intron 1 of 27)	intron (NM_008712, intron 1 of 27)	4886.0	NM_008712	18125.0	Mm.44249	NM_008712	ENSMUSG00000029361	Nos1	2310005C01Rik|N-NOS|NC-NOS|NO|NOS|NOS-I|Nos-1|bNOS|nNOS	nitric oxide synthase 1, neuronal	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83843688-3	chr11	83843585	83843785	+	861.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7184.0	NM_001291268	21410.0	Mm.7226	NM_009330	ENSMUSG00000020679	Hnf1b	HNF-1-beta|HNF-1B|HNF-1Beta|Hnf1beta|LFB3|Tcf-2|Tcf2|vHNF1	HNF1 homeobox B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-101357527-4	chr4	101357437	101357637	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040640, intron 1 of 3)	intron (NR_040640, intron 1 of 3)	-1289.0	NR_040708	77866.0	Mm.137053	NR_040708	ENSMUSG00000086782	E130102H24Rik	-	RIKEN cDNA E130102H24 gene	ncRNA	1.57932403977368	1.5951110942696	1.8324586935736	1.89509310550968	1.91013624518809	1.17893580722038	2.07143238406618	1.90476234179158	0.259045183671757	0.806595780521111	0.998431161219273
Merged-chr1-93401746-4	chr1	93401639	93401839	+	988.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207031, intron 20 of 23)	intron (NM_207031, intron 20 of 23)	27843.0	NM_001271884	404545.0	Mm.297411	NM_207031	ENSMUSG00000034107	Ano7	Ngep|Ngep-L|Pcanap5|Tmem16g	anoctamin 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-61131848-2	chr1	61131748	61131948	+	619.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	153934.0	NM_017480	54167.0	Mm.42044	NM_017480	ENSMUSG00000026009	Icos	AILIM|CCLP|CRP-1|H4|Ly115	inducible T cell co-stimulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-133583840-4	chr3	133583742	133583942	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39452.0	NM_001346736	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-64306406-2	chr1	64306306	64306506	+	614.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-185017.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-23603722-1	chr17	23603622	23603822	+	579.0	f1_c57bl6.idr	intron (NM_001033425, intron 1 of 5)	intron (NM_001033425, intron 1 of 5)	2896.0	NM_001289482	332221.0	Mm.270315	NM_001033425	ENSMUSG00000023902	Zscan10	BC068284|Zfp206|Zkscan10|Znf206	zinc finger and SCAN domain containing 10	protein-coding	2.10797781099564	1.12793763080194	1.98730310710304	2.39248096478345	2.28203476564895	1.13344960411881	1.108529708186	2.0496295242264	-0.571634038704462	0.633767350062276	0.982417279970648
Merged-chr11-22287921-2	chr11	22287821	22288021	+	714.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1126.0	NM_001252515	216565.0	Mm.491265	NM_153078	ENSMUSG00000042302	Ehbp1	AF424697|Flj21950|NACSIN	EH domain binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99014844-2	chr7	99014744	99014944	+	917.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 7 of 14)	intron (NM_178635, intron 7 of 14)	126300.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-93476220-2	chr10	93476149	93476349	+	987.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008517, intron 14 of 18)	intron (NM_008517, intron 14 of 18)	-12519.0	NM_010401	15109.0	Mm.13000	NM_010401	ENSMUSG00000020017	Hal	Hsd|his|histidase	histidine ammonia lyase	protein-coding	0.537047047007509	1.41252760147114	0.563022043809402	1.64711277309664	1.1185364219848	0.578053871741591	0.565752369100585	1.06906647054026	-1.18945924002034	0.47397846217369	0.926389051231527
Merged-chr7-63818640-2	chr7	63818540	63818740	+	562.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-98217.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-30000095-1	chr17	29999995	30000195	+	986.0	f1_balb.idr	Intergenic	B1F1|SINE|Alu	-4944.0	NM_148926	21769.0	Mm.220972	NM_148926	ENSMUSG00000044477	Zfand3	AW539211|TEG-27|Tex27	zinc finger, AN1-type domain 3	protein-coding	1.65326268946311	0.73169079743426	0.716601329820696	0.704745019165924	1.17479422900522	1.73027387114268	0.719955810126856	1.85168222578582	1.47925209179539	0.336156126280914	0.836606195473009
Merged-chr10-100028059-2	chr10	100027959	100028159	+	825.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347156, intron 1 of 8)	intron (NM_001347156, intron 1 of 8)	12238.0	NM_013598	17311.0	Mm.45124	NM_013598	ENSMUSG00000019966	Kitl	Clo|Con|Gb|Kitlg|Mgf|SCF|SF|SLF|Sl|blz|contrasted	kit ligand	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-29648419-4	chr19	29648311	29648511	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081213)	promoter-TSS (NM_001081213)	4.0	NM_001081213	226090.0	Mm.267131	NM_001081213	ENSMUSG00000046324	Ermp1	D19Ertd410e|D19Wsu12e|Fxna|b2b2633Clo|mKIAA1815	endoplasmic reticulum metallopeptidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-16584243-4	chr12	16584152	16584352	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355598, intron 1 of 20)	intron (NM_001355598, intron 1 of 20)	5518.0	NM_015763	14245.0	Mm.153625	NM_015763	ENSMUSG00000020593	Lpin1	Lipin1|fld	lipin 1	protein-coding	1.7238312317389	1.40882189247731	1.65339778531662	2.82155973100019	2.24037693436892	3.22792331664476	3.85083062014787	3.43192612158353	2.35949232911302	0.00516404847179878	0.0685378911113294
Merged-chr8-70594308-4	chr8	70594211	70594411	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023627)	promoter-TSS (NM_023627)	-170.0	NM_023627	71780.0	Mm.29357	NM_023627	ENSMUSG00000019139	Isyna1	1300017C10Rik|AU018670	myo-inositol 1-phosphate synthase A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117415754-4	chr8	117415678	117415878	+	922.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028941, intron 4 of 20)	MTD|LTR|ERVL-MaLR	-37245.0	NR_106045	102466801.0		NR_106045	ENSMUSG00000099062	Mir7077	Gm27774|mmu-mir-7077	microRNA 7077	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-51968120-4	chr12	51968044	51968244	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177171, intron 1 of 35)	intron (NM_177171, intron 1 of 35)	3177.0	NM_177171	320487.0	Mm.131941	NM_177171	ENSMUSG00000035181	Heatr5a	C230081H03Rik|D930036F22Rik|mKIAA1316	HEAT repeat containing 5A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-14996633-1	chr9	14996533	14996733	+	540.0	f1_c57bl6.idr	Intergenic	Intergenic	48845.0	NM_019482	55991.0	Mm.142253	NM_019482	ENSMUSG00000031934	Panx1	AI847747	pannexin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-12435138-7	chr19	12435054	12435254	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7249.0	NM_019540	56093.0	Mm.285849	NM_019540	ENSMUSG00000040065	Pfpl	Epcs5|Epcs50	pore forming protein-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-4753060-4	chr7	4752960	4753160	+	956.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183406)	promoter-TSS (NM_183406)	34.0	NR_110411	333182.0	Mm.29625	NM_183405	ENSMUSG00000051811	Cox6b2	1700067P11Rik|BC048670|COXVIB2	cytochrome c oxidase subunit VIb polypeptide 2	protein-coding	2.11017285198997	2.35058332629806	2.72468897884703	2.45494698920073	2.35363191354284	2.50388046040549	2.74520939412916	2.46703018460368	0.212423838774879	0.782364509280103	0.998431161219273
Merged-chr9-107634661-2	chr9	107634561	107634761	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008138, intron 1 of 8)	intron (NM_008138, intron 1 of 8)	681.0	NM_008138	14678.0	Mm.196464	NM_008138	ENSMUSG00000032562	Gnai2	C76432|Galphai2|Gia|Gnai-2	guanine nucleotide binding protein (G protein), alpha inhibiting 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-73692521-3	chr12	73692427	73692627	+	665.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008856, intron 3 of 13)	intron (NM_008856, intron 3 of 13)	107731.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-43235314-4	chr5	43235210	43235410	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028417)	promoter-TSS (NR_028417)	44.0	NR_028417	665934.0	Mm.381491	NR_028417	ENSMUSG00000085720	Gm7854	EG665934	predicted gene 7854	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-82015324-4	chr11	82015227	82015427	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-20250.0	NM_011333	20296.0	Mm.290320	NM_011333	ENSMUSG00000035385	Ccl2	AI323594|HC11|JE|MCAF|MCP-1|MCP1|SMC-CF|Scya2|Sigje	chemokine (C-C motif) ligand 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-123176065-2	chr7	123175965	123176165	+	717.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144925, intron 9 of 23)	intron (NM_144925, intron 9 of 23)	-38801.0	NM_146198	233836.0	Mm.211838	NM_146198	ENSMUSG00000030769	Slc5a11	2010013B02Rik|Kst1|RKST2|SMIT2|Slc5a10	solute carrier family 5 (sodium/glucose cotransporter), member 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135981698-4	chr4	135981608	135981808	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025411, intron 3 of 5)	L1MA5|LINE|L1	5536.0	NM_025411	66193.0	Mm.29131	NM_025411	ENSMUSG00000028669	Pithd1	1110049F12Rik|AA408179|Trp26	PITH (C-terminal proteasome-interacting domain of thioredoxin-like) domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-104234010-4	chr9	104233906	104234106	+	954.775024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359740, intron 5 of 56)	intron (NM_001359740, intron 5 of 56)	28924.0	NM_001359740	235567.0	Mm.217256	NM_001163026	ENSMUSG00000032560	Dnajc13	D030002L11Rik|Gm1124|RME-8|Rme8|mKIAA0678	DnaJ heat shock protein family (Hsp40) member C13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-98809592-4	chr7	98809496	98809696	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-25516.0	NM_001285794	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	4.13352806563514	5.06309189895512	4.30439534877692	4.29471863770484	3.83703001436542	3.73680524853503	5.17238841673548	3.1634952690746	-0.379071183205173	0.457156999294628	0.919371384099387
Merged-chr4-53104680-3	chr4	53104556	53104756	+	842.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 7 of 49)	intron (NM_013454, intron 7 of 49)	55239.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-119962301-2	chr4	119962185	119962385	+	627.200012	f1_balb.idr|f1_c57bl6.idr	intron (NM_010657, intron 1 of 8)	intron (NM_010657, intron 1 of 8)	147607.0	NM_010657	16656.0	Mm.302758	NM_010657	ENSMUSG00000028634	Hivep3	2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3	human immunodeficiency virus type I enhancer binding protein 3	protein-coding	1.84318374844913	2.56023320962839	1.20530975675661	1.17999951342584	2.28625406117305	2.23837323987904	1.86816322063757	2.85683948587154	1.25349433913925	0.228963220662158	0.72208302043938
Merged-chr8-101125725-2	chr8	101125624	101125824	+	642.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2B2|LINE|L1	1659387.0	NM_009866	12552.0	Mm.1571	NM_009866	ENSMUSG00000031673	Cdh11	Cad11|OSF-4	cadherin 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-125571223-2	chr8	125571123	125571323	+	787.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1360.0	NM_001357372	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-149923842-3	chr1	149923752	149923952	+	743.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008869, intron 2 of 17)	intron (NM_008869, intron 2 of 17)	-1413.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21507826-2	chr9	21507726	21507926	+	927.833374	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001253893)	TTS (NM_001253893)	2068.0	NM_001324510	17083.0	Mm.196618	NM_010744	ENSMUSG00000032180	Tmed1	Il1rl1l|Ly84l|St2l	transmembrane p24 trafficking protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-138158591-4	chr1	138158522	138158722	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001268286, intron 2 of 28)	intron (NM_001268286, intron 2 of 28)	16504.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-48976500-4	chr13	48976397	48976597	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8385.0	NR_015601	68128.0	Mm.426304	NR_015601		Fam120aos	C030044B11Rik	family with sequence similarity 120A, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-108427482-2	chr5	108427382	108427582	+	785.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008806, intron 15 of 21)	intron (NM_008806, intron 15 of 21)	6917.0	NR_154996	11958.0	Mm.136093	NM_007507	ENSMUSG00000050856	Atp5k	2610008D24Rik|Atp5i|Lfm1	ATP synthase, H+ transporting, mitochondrial F1F0 complex, subunit E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-85989213-4	chr1	85989061	85989261	+	916.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28106.0	NM_001033290	227326.0	Mm.244158	NM_001033290	ENSMUSG00000049608	Gpr55	CTFL|Gm218|Lpir1	G protein-coupled receptor 55	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-149858972-2	chr1	149858872	149859072	+	629.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008869, intron 13 of 17)	B3|SINE|B2	63467.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-86958318-2	chr17	86958218	86958418	+	744.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1A|DNA|hAT-Charlie	-4793.0	NM_145491	104215.0	Mm.826	NM_145491	ENSMUSG00000024143	Rhoq	Arhq|TC10A|Tc10	ras homolog family member Q	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135066909-2	chr4	135066809	135067009	+	766.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53736.0	NM_019732	12399.0	Mm.378894	NM_019732	ENSMUSG00000070691	Runx3	AML2|Cbfa3|Pebp2a3	runt related transcription factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180249750-2	chr1	180249650	180249850	+	556.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001128605, intron 1 of 10)	B1_Mur1|SINE|Alu	-3800.0	NM_011183	19165.0	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45593906-2	chr7	45593810	45594010	+	722.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18734.0	NR_038165	71661.0	Mm.439894	NR_038165	ENSMUSG00000109644	0610005C13Rik	AI182092	RIKEN cDNA 0610005C13 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-14678494-3	chr10	14678389	14678589	+	944.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025418, intron 4 of 7)	intron (NM_025418, intron 4 of 7)	27000.0	NM_025418	66201.0	Mm.227983	NM_025418	ENSMUSG00000019868	Vta1	1110001D18Rik|1110059P08Rik|AU040813|C85340|LIP5|SBP1	vesicle (multivesicular body) trafficking 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-59816171-1	chr4	59816071	59816271	+	751.0	f0_balb.idr	intron (NM_172468, intron 1 of 8)	LTR33A|LTR|ERVL	10521.0	NM_172468	209131.0	Mm.259705	NM_172468	ENSMUSG00000028385	Snx30	4732481H14Rik|C030041J06Rik	sorting nexin family member 30	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-90352386-4	chr7	90352251	90352451	+	959.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040085, intron 2 of 18)	MIR3|SINE|MIR	-34630.0	NM_001040087	83671.0	Mm.26751	NM_031394	ENSMUSG00000030616	Sytl2	AI266830|Slp2|mKIAA1597	synaptotagmin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-137694542-4	chr6	137694420	137694620	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR24|LTR|ERV1	-40562.0	NM_011499	20901.0	Mm.22584	NM_011499	ENSMUSG00000030224	Strap	AW557906|C78091|C79202|Unrip	serine/threonine kinase receptor associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-18343988-4	chr16	18343901	18344101	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138583)	promoter-TSS (NM_138583)	-69.0	NM_001359111	27883.0	Mm.265990	NM_138583	ENSMUSG00000013539	Tango2	D16H22S680E|T10	transport and golgi organization 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-12972214-4	chr18	12972098	12972298	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_008378, exon 1 of 11)	5' UTR (NM_008378, exon 1 of 11)	275.0	NM_008378	16210.0	Mm.8154	NM_008378	ENSMUSG00000024423	Impact	E430016J11Rik	impact, RWD domain protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4260723-4	chr19	4260624	4260824	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001356620)	TTS (NM_001356620)	3154.0	NR_105951	102465595.0		NR_105951	ENSMUSG00000099290	Mir6985	Gm27719|mmu-mir-6985	microRNA 6985	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-10371597-4	chr17	10371506	10371706	+	939.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47004.0	NR_045461	76634.0	Mm.491052	NR_045461	ENSMUSG00000099384	1700110C19Rik	-	RIKEN cDNA 1700110C19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-25481527-4	chr9	25481437	25481637	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026189)	promoter-TSS (NM_026189)	-60.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-172402868-2	chr1	172402768	172402968	+	915.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	26337.0	NM_026234	67556.0	Mm.26612	NM_026234	ENSMUSG00000050229	Pigm	4933437L05Rik|AI644422|AV302080|C920011G20Rik	phosphatidylinositol glycan anchor biosynthesis, class M	protein-coding	-0.0641284128350694	-0.0396682730444076	-0.0475605749315028	0.784322147064793	-0.0625682560652721	-0.0379046255544383	-0.0458101221591372	1.04368760175669	0.610467097070468	0.791414086630056	1
Merged-chr18-9444976-4	chr18	9444866	9445066	+	797.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026484, intron 1 of 9)	MTC|LTR|ERVL-MaLR	5188.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-120527145-2	chr5	120527045	120527245	+	587.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177595, intron 11 of 13)	B1_Mus1|SINE|Alu	15953.0	NM_001177594	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-134929429-1	chr4	134929329	134929529	+	581.0	f0_c57.idr	Intergenic	Intergenic	-1551.0	NM_026780	68592.0	Mm.29989	NM_026780	ENSMUSG00000028821	Syf2	1110018L13Rik|Cbpin|D4Bwg1551e|Gcipip|Ntc31|mp29|p29	SYF2 homolog, RNA splicing factor (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-86947196-1	chr3	86947096	86947296	+	572.0	f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-26312.0	NM_001195498	70762.0	Mm.44490	NM_027539	ENSMUSG00000028078	Dclk2	6330415M09Rik|AU044875|CL2|CLICK2|Click-II|Dcamkl2	doublecortin-like kinase 2	protein-coding	0.652709252755215	0.688044143275565	1.18278200408241	1.2621057290683	0.654959192958169	1.49277000144233	1.19368935162879	1.26997118817574	0.913358831582176	0.549560239093681	0.958850792269644
Merged-chr13-5859326-2	chr13	5859226	5859426	+	701.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1234.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180400716-2	chr1	180400616	180400816	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081175, intron 2 of 7)	intron (NM_001081175, intron 2 of 7)	-70167.0	NR_003623	277333.0	Mm.389223	NM_199472		Gm5069	EG277333	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-7494373-4	chr19	7494266	7494466	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146091)	promoter-TSS (NM_146091)	-72.0	NM_146091	109168.0	Mm.264016	NM_146091	ENSMUSG00000024759	Atl3	4633402C03Rik|5730596K20Rik|AI465397|AW228836	atlastin GTPase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-95884796-2	chr15	95884696	95884896	+	604.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 2 of 19)	intron (NM_175344, intron 2 of 19)	-54724.0	NR_155276	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-105981464-4	chr1	105981370	105981570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151625, intron 2 of 2)	intron (NR_151625, intron 2 of 2)	8812.0	NR_151625	635504.0	Mm.359717	NR_151625		Gm7160	EG635504	predicted gene 7160	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141791768-1	chr4	141791668	141791868	+	690.0	f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-1124.0	NM_172338	214063.0	Mm.39102	NM_172338	ENSMUSG00000040697	Dnajc16	2900037O03Rik|4732437J24Rik|D030060M24|mKIAA0962	DnaJ heat shock protein family (Hsp40) member C16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-37346732-4	chr13	37346685	37346885	+	828.104187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010745, intron 1 of 4)	intron (NM_010745, intron 1 of 4)	1440.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-81797173-2	chr18	81797073	81797273	+	573.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	194907.0	NR_039589	100628596.0		NR_039589	ENSMUSG00000093036	Mir5127	mmu-mir-5127|mu-mir-5127	microRNA 5127	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-173544415-1	chr2	173544315	173544515	+	932.0	f1_c57bl6.idr	Intergenic	Intergenic	21823.0	NM_028158	72221.0	Mm.46132	NM_028158	ENSMUSG00000027518	1700021F07Rik	-	RIKEN cDNA 1700021F07 gene	protein-coding	0.315784125854244	0.417162144929945	0.0699907849214934	0.674162193842011	0.0602183075373185	0.076441968168272	0.0711507499945115	0.482060536363494	-1.56693856851288	0.453399730731106	1
Merged-chr14-64453983-1	chr14	64453883	64454083	+	616.0	f1_c57bl6.idr	intron (NM_026322, intron 2 of 10)	intron (NM_026322, intron 2 of 10)	1920.0	NM_026322	110265.0	Mm.26713	NM_026322	ENSMUSG00000054733	Msra	2310045J23Rik|6530413P12Rik|MSR-A	methionine sulfoxide reductase A	protein-coding	1.23508459427775	1.28195027711447	1.65403412260507	1.19432382155103	0.87436060785727	0.74465589772153	0.732958050224505	1.20114187000128	-2.13443166926027	0.133232897209063	0.570764692507331
Merged-chr3-88333999-2	chr3	88333899	88334099	+	886.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_024246, intron 1 of 3)	intron (NM_024246, intron 1 of 3)	434.0	NM_024246	71913.0	Mm.34256	NM_024246	ENSMUSG00000001420	Tmem79	2310042N02Rik|2310074C17Rik|Matt|ma	transmembrane protein 79	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-20828576-5	chr14	20828480	20828680	+	935.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8082.0	NM_008873	18792.0	Mm.4183	NM_008873	ENSMUSG00000021822	Plau	u-PA|uPA	plasminogen activator, urokinase	protein-coding	1.41220567684244	1.24723156038609	1.38031988917064	1.70165762438507	1.62815585014747	1.5816615162321	1.3895317322567	1.60530617020209	0.394884697660101	0.72331785082842	0.998431161219273
Merged-chr4-58613242-4	chr4	58613144	58613344	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59753.0	NM_010336	14745.0	Mm.4772	NM_010336	ENSMUSG00000038668	Lpar1	AI326300|Edg2|Gpcr26|Kdt2|lpA1|vzg-1	lysophosphatidic acid receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115508129-7	chr5	115507972	115508172	+	962.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011223, intron 1 of 10)	intron (NM_011223, intron 1 of 10)	1396.0	NM_133915	19303.0	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-108140931-4	chr10	108140814	108141014	+	999.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21486.0	NM_027892	17931.0	Mm.422959	NM_027892	ENSMUSG00000019907	Ppp1r12a	1200015F06Rik|5730577I22Rik|AA792106|AV099298|D10Ertd625e|Mypt1	protein phosphatase 1, regulatory (inhibitor) subunit 12A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-16696790-3	chr1	16696705	16696905	+	778.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159711, intron 2 of 4)	intron (NM_001159711, intron 2 of 4)	8349.0	NM_001159711	17087.0	Mm.116844	NM_016923	ENSMUSG00000025779	Ly96	ESOP-1|MD-2|MD2	lymphocyte antigen 96	protein-coding	1.93782520873544	2.9355739011197	2.83711585918843	2.52083270568791	3.13114257334767	3.34079993695585	2.96464315673102	3.21258751968636	1.04252495039353	0.125320693109216	0.554560244378302
Merged-chr15-76056315-2	chr15	76056215	76056415	+	605.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310542, intron 24 of 36)	intron (NM_001310542, intron 24 of 36)	8573.0	NR_105917	102466772.0		NR_105917	ENSMUSG00000098451	Mir6952	Gm27948|mmu-mir-6952	microRNA 6952	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-72965523-4	chr9	72965421	72965621	+	962.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163725, intron 4 of 6)	B1F|SINE|Alu	6736.0	NM_001163725	67685.0	Mm.31817	NM_026314	ENSMUSG00000092192	Dyx1c1	1700010I24Rik|Dnaaf4|EKN1|b2b811.1Clo|b2b811Clo	dyslexia susceptibility 1 candidate 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-12938597-2	chr7	12938497	12938697	+	632.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11181.0	NM_029809	381845.0	Mm.439896	NM_029809	ENSMUSG00000033967	Rnf225	2310014L17Rik|AV237412|C77118	ring finger protein 225	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-8346549-4	chr5	8346440	8346640	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001007220, intron 2 of 28)	intron (NM_001007220, intron 2 of 28)	21620.0	NM_001007221	11496.0	Mm.275895	NM_001007220	ENSMUSG00000040537	Adam22	2900022I03Rik|AI854032|MDC2	a disintegrin and metallopeptidase domain 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-87144362-3	chr9	87144306	87144506	+	817.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177731)	promoter-TSS (NM_001177731)	100.0	NM_001101482	244958.0	Mm.335337	NM_001101482	ENSMUSG00000042761	Mrap2	BB633055	melanocortin 2 receptor accessory protein 2	protein-coding	-0.189476373157734	-0.328797212917079	0.0154786039876118	-0.337722338767137	-0.343249833755141	0.550085485317794	-0.332715747736249	-0.337040872235652	1.31486544890387	0.588158080771206	1
Merged-chr2-71765568-2	chr2	71765468	71765668	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_039557, intron 3 of 3).2	intron (NR_039557, intron 3 of 3).2	-21371.0	NM_008397	16403.0	Mm.225096	NM_008397	ENSMUSG00000027111	Itga6	5033401O05Rik|AI115430|Cd49f|VLA-6	integrin alpha 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-76642424-3	chr11	76642324	76642524	+	672.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-30046.0	NM_177182	320522.0	Mm.131585	NM_177182	ENSMUSG00000044243	Bhlha9	A830053O21Rik|Fingerin	basic helix-loop-helix family, member a9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-103972157-2	chr8	103972044	103972244	+	595.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-129481.0	NM_009868	12562.0	Mm.21767	NM_009868	ENSMUSG00000031871	Cdh5	7B4|AA408225|Cd144|VE-Cad|VECD|VEcad|Vec	cadherin 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-156742156-2	chr1	156742056	156742256	+	872.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23246.0	NM_145413	215015.0	Mm.229107	NM_145413	ENSMUSG00000033557	Fam20b	C530043G21Rik|mKIAA0475	family with sequence similarity 20, member B	protein-coding	-1.27480050717774	-0.604729833679879	-1.25573295904267	-1.26493563944758	-1.27428069156472	-1.24210192204986	-1.25319678955844	-1.26328836405502	-2.6632876257018	0.439827081912762	1
Merged-chr5-146824739-4	chr5	146824647	146824847	+	966.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8143.0	NM_019647	19933.0	Mm.316592	NM_019647	ENSMUSG00000041453	Rpl21	8430440E03Rik|L21	ribosomal protein L21	protein-coding	1.71681755377109	2.59822018656986	1.33761587824463	1.0590269673703	2.5767360326057	1.9617790817884	2.02538199770384	1.0629824836115	0.464028072775151	0.688701399231308	0.996533206832645
Merged-chr17-23827921-1	chr17	23827821	23828021	+	963.0	f1_c57bl6.idr	intron (NM_026305, intron 2 of 3)	intron (NM_026305, intron 2 of 3)	1188.0	NM_026305	67673.0	Mm.153758	NM_026305	ENSMUSG00000055839	Elob	0610040H15Rik|Tceb2	elongin B	protein-coding	0.557359069934096	1.19700004648413	1.03075681236284	0.411288304787108	0.401589241319917	1.09653081967929	0.616402505390076	0.412481747600895	-0.908594730692274	0.596889719917397	1
Merged-chr17-34047499-6	chr17	34047273	34047473	+	867.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001317722, intron 7 of 64)	intron (NM_001317722, intron 7 of 64)	8235.0	NM_001317722	12815.0	Mm.20230	NM_009926	ENSMUSG00000024330	Col11a2	-	collagen, type XI, alpha 2	protein-coding	0.69783632524651	0.815504924775288	0.779623552957452	0.750287612092621	3.13335802571882	2.8276173946883	2.16954395435657	1.05858663549483	5.97814566063161	1.43690219092631e-05	0.000624635959664271
Merged-chr3-34069139-4	chr3	34069037	34069237	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001113188, exon 17 of 17)	3' UTR (NM_001113188, exon 17 of 17)	12217.0	NM_001026211	67713.0	Mm.274266	NM_026332	ENSMUSG00000027679	Dnajc19	1810055D05Rik|AA959924|Tim14	DnaJ heat shock protein family (Hsp40) member C19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-51873878-2	chr12	51873778	51873978	+	752.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44342.0	NM_144788	207304.0	Mm.249391	NM_144788	ENSMUSG00000035247	Hectd1	A630086P08Rik|AI844876|b2b327Clo|opm	HECT domain E3 ubiquitin protein ligase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-31126381-3	chr7	31126262	31126462	+	907.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011322, intron 1 of 5)	intron (NM_011322, intron 1 of 5)	661.0	NM_011322	20266.0	Mm.1418	NM_011322	ENSMUSG00000019194	Scn1b	-	sodium channel, voltage-gated, type I, beta	protein-coding	2.37971443687952	2.3778820086814	2.06107415019384	2.42338055724465	2.03791825840821	1.36183001026221	2.07655246621593	2.01553970501782	-1.05833803578886	0.249323415441537	0.747698903845194
Merged-chr6-125342350-4	chr6	125342247	125342447	+	923.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011324, intron 7 of 11)	L1M4|LINE|L1	-7376.0	NM_011609	21937.0	Mm.1258	NM_011609	ENSMUSG00000030341	Tnfrsf1a	CD120a|FPF|TNF-R|TNF-R-I|TNF-R1|TNF-R55|TNF-alphaR1|TNFAR|TNFR60|TNFRI|TNFRp55|TNFalpha-R1|Tnfr-2|Tnfr1|p55|p55-R	tumor necrosis factor receptor superfamily, member 1a	protein-coding	0.961168150548077	1.36967198771648	0.680040978424666	1.26843743756204	0.658031283299075	0.694221417837597	1.43767091235363	1.3829161326114	0.0232814129894096	0.987803235180794	0.998431161219273
Merged-chr5-3359286-4	chr5	3359193	3359393	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 2 of 7)	intron (NM_009873, intron 2 of 7)	15400.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-80181246-5	chr11	80181149	80181349	+	677.533325	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2623.0	NM_028019	71956.0	Mm.22985	NM_028019	ENSMUSG00000020707	Rnf135	0610037N03Rik|2410006N06Rik	ring finger protein 135	protein-coding	1.39031572978996	0.945631768108907	0.925511989845243	2.24727490904031	1.83492388953884	0.950082530383802	1.52928880301164	2.03043546134495	0.378337205509127	0.774128433533653	0.998431161219273
Merged-chr19-41016539-4	chr19	41016454	41016654	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4876.0	NR_155302	100861913.0	Mm.35204	NR_155302		C330026H20Rik	-	RIKEN cDNA C330026H20 gene	ncRNA	0.600398291376278	0.463705895839746	1.09824193803859	0.445316673533365	0.60586036377742	0.466013955400104	1.50368778882966	1.06152555213824	1.42213376772649	0.392198077256877	0.881138324687318
Merged-chr3-37886969-2	chr3	37886869	37887069	+	813.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11844.0	NR_040559	626410.0	Mm.389417	NR_040559	ENSMUSG00000106461	Gm20755	-	predicted gene, 20755	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118212865-4	chr11	118212772	118212972	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001112700)	promoter-TSS (NM_001112700)	-130.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-103965143-2	chr11	103965038	103965238	+	819.6999509999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-1587.0	NM_001304574	11841.0	Mm.5061	NM_007477	ENSMUSG00000062421	Arf2	-	ADP-ribosylation factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16311705-4	chr7	16311658	16311858	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133234, intron 1 of 3)	intron (NM_133234, intron 1 of 3)	2175.0	NM_133234	170770.0	Mm.7660	NM_133234	ENSMUSG00000002083	Bbc3	PUMA|PUMA/JFY1	BCL2 binding component 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-74725506-2	chr15	74725406	74725606	+	824.916687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	2520.0	NM_020519	57277.0	Mm.27630	NM_020519	ENSMUSG00000022596	Slurp1	1110021N19Rik|AI415082|ARS|ArsB|Slurp-1	secreted Ly6/Plaur domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3284049-2	chr12	3283949	3284149	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016676, intron 1 of 5)	PB1D11|SINE|Alu	25920.0	NM_016676	19325.0	Mm.378993	NM_016676	ENSMUSG00000020671	Rab10	AW107754	RAB10, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-19014235-10	chr10	19014061	19014261	+	956.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009397, intron 1 of 8)	(CAAAA)n|Simple_repeat|Simple_repeat	1249.0	NM_009397	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-155811774-1	chr1	155811674	155811874	+	549.0	f1_c57bl6.idr	intron (NM_001024945, intron 1 of 11)	intron (NM_001024945, intron 1 of 11)	1125.0	NM_023268	104009.0	Mm.27035	NM_023268	ENSMUSG00000033684	Qsox1	1300003H02Rik|QSOX|Qscn6|SOx|b2b2673Clo	quiescin Q6 sulfhydryl oxidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16153673-2	chr7	16153573	16153773	+	955.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347561, intron 7 of 8)	intron (NM_001347561, intron 7 of 8)	-21722.0	NM_001277988	17537.0	Mm.360516	NM_008627	ENSMUSG00000041420	Meis3	AI573393|Mrg2	Meis homeobox 3	protein-coding	2.680256033173	2.26939087051341	2.70793563059726	2.73022370803646	2.70150718260894	2.28497017698675	2.72827501975406	2.74367444870106	0.0374076343323215	0.959068101258565	0.998431161219273
Merged-chr1-51505851-2	chr1	51505751	51505951	+	645.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27452.0	NM_001310549	109019.0	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-57026019-1	chr4	57025919	57026119	+	549.0	f0_balb.idr	intron (NM_001355492, intron 19 of 24)	intron (NM_001355492, intron 19 of 24)	-35628.0	NM_001142965	230235.0	Mm.207654	NM_001142965	ENSMUSG00000045589	Frrs1l	6430704M03Rik	ferric-chelate reductase 1 like	protein-coding	-0.557729759220241	-0.79339650415395	-0.795986349652498	-0.647340810896395	-0.667424333117571	-0.791772185602995	-0.488655870351548	-0.797625614594313	0.196498106331162	0.941342943004874	1
Merged-chr18-46522269-2	chr18	46522169	46522369	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173423, intron 2 of 2)	intron (NM_173423, intron 2 of 2)	3702.0	NM_173423	240263.0	Mm.38249	NM_173423	ENSMUSG00000033319	Fem1c	2610312A07Rik|3632443A22Rik|AI646567	fem-1 homolog c (C.elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-103929593-4	chr14	103929489	103929689	+	916.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-85113.0	NM_001136061	13618.0	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-24047690-3	chr18	24047611	24047811	+	777.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26898.0	NM_021559	59057.0	Mm.417427	NM_021559	ENSMUSG00000051469	Zfp24	3526401F17Rik|5033419P20Rik|AI480505|AI642085|AL024422|KOX17|ZF-12|Zfp191|Znf24	zinc finger protein 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114984244-2	chr11	114984142	114984342	+	761.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_145437, exon 4 of 4)	exon (NM_145437, exon 4 of 4)	5644.0	NM_145437	217305.0	Mm.275986	NM_145437	ENSMUSG00000034641	Cd300ld	4732429D16Rik|CLM5|Cd300ld1|LMIR4|MAIR-IV|clm-5	CD300 molecule like family member d	protein-coding	0.34060668648056	0.382901896796985	0.369437932773545	0.358798052850036	1.09330380626337	1.79504091910075	0.372438350437537	1.18216119411556	4.86096467745312	0.00601921620495863	0.0765567731735975
Merged-chr2-45019319-5	chr2	45019257	45019457	+	663.033325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355291, intron 3 of 9)	intron (NM_001355291, intron 3 of 9)	3820.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-120993264-4	chr4	120993165	120993365	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133716, intron 1 of 9)	intron (NM_133716, intron 1 of 9)	-19943.0	NR_105982	102465614.0		NR_105982	ENSMUSG00000106436	Mir7015	mmu-mir-7015	microRNA 7015	ncRNA	4.54109128642501	4.08662798963298	5.07370985619335	4.5504741108571	4.94846809276275	4.94616050107054	5.5457170486397	4.37183017596632	0.491326945083202	0.199036280440744	0.682643867862233
Merged-chr1-194943645-2	chr1	194943545	194943745	+	603.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111059, intron 1 of 7)	intron (NM_001111059, intron 1 of 7)	4824.0	NM_133654	12490.0	Mm.29798	NM_133654	ENSMUSG00000016494	Cd34	AU040960	CD34 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-30024769-5	chr11	30024697	30024897	+	758.776184	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_146016, exon 2 of 42)	5' UTR (NM_146016, exon 2 of 42)	1236.0	NM_146016	237711.0	Mm.445271	NM_146016	ENSMUSG00000044072	Eml6	2900083P10Rik|C230094A16Rik|EMAP-6	echinoderm microtubule associated protein like 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-142881522-1	chr3	142881422	142881622	+	1000.0	f0_balb.idr	promoter-TSS (NR_152127)	promoter-TSS (NR_152127)	482.0	NM_178654	109333.0	Mm.244236	NM_178654	ENSMUSG00000004591	Pkn2	6030436C20Rik|AI507382|PRK2|Prkcl2|Stk7	protein kinase N2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-30427043-4	chr9	30426932	30427132	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028874)	promoter-TSS (NM_028874)	-297.0	NM_028874	102607.0	Mm.35084	NM_028874	ENSMUSG00000031993	Snx19	3526401K03Rik|AI195321|AI848208|mKIAA0254	sorting nexin 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-80088832-4	chr15	80088733	80088933	+	946.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-2501.0	NM_009303	20972.0	Mm.230301	NM_009303	ENSMUSG00000022415	Syngr1	R75468|Syngr1b|p29	synaptogyrin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-9056655-2	chr5	9056555	9056755	+	799.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44082.0	NM_001081029	652925.0	Mm.439954	NM_001081029	ENSMUSG00000079659	Tmem243	4930420K17Rik|E030031F02Rik	transmembrane protein 243, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-79088650-4	chr3	79088548	79088748	+	864.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001310536, exon 12 of 24)	exon (NM_001310536, exon 12 of 24)	56239.0	NM_001310536	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-94179855-2	chr8	94179755	94179955	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_013602, exon 2 of 3)	exon (NM_013602, exon 2 of 3)	766.0	NM_013602	17748.0	Mm.192991	NM_013602	ENSMUSG00000031765	Mt1	MT-I|Mt-1	metallothionein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-51820155-3	chr11	51820063	51820263	+	778.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357588, intron 11 of 12)	B3|SINE|B2	37318.0	NM_199299	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-76590024-4	chr11	76589902	76590102	+	994.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12263.0	NM_198894	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99028452-2	chr15	99028352	99028552	+	863.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1439.0	NM_009448	22146.0	Mm.88212	NM_009448	ENSMUSG00000043091	Tuba1c	M[a]6|Tuba6	tubulin, alpha 1C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171665699-2	chr1	171665599	171665799	+	753.083313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3B|LINE|L1	-12662.0	NM_144539	75345.0	Mm.164642	NM_144539	ENSMUSG00000038179	Slamf7	19A|19A24|4930560D03Rik|CRACC|CS1	SLAM family member 7	protein-coding	1.25944697460248	0.457081305920984	1.04886915763141	0.893859280689897	0.945447647822797	0.459011079697799	0.450385589344047	0.442978128922643	-1.9577402623524	0.273743094663742	1
Merged-chr4-10896349-1	chr4	10896249	10896449	+	542.0	f1_balb.idr	intron (NM_026005, intron 5 of 5)	intron (NM_026005, intron 5 of 5)	21851.0	NM_026005	67157.0	Mm.440552	NM_026005	ENSMUSG00000059482	2610301B20Rik	AI428449	RIKEN cDNA 2610301B20 gene	protein-coding	-0.953721354153451	-1.41025554057125	-1.42001056191158	-1.42802362688808	-1.44024889148474	-1.40814158675276	-1.41780223890411	-1.42658929208844	-2.11310844444413	0.543369238581748	1
Merged-chr10-13184282-4	chr10	13184140	13184340	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181470, intron 4 of 10)	intron (NM_181470, intron 4 of 10)	-6217.0	NM_029172	75122.0	Mm.159433	NM_029172	ENSMUSG00000019815	Zc2hc1b	4930519B02Rik|Fam164b	zinc finger, C2HC-type containing 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-84427497-3	chr2	84427395	84427595	+	697.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2229.0	NM_018782	54598.0	Mm.75467	NM_018782	ENSMUSG00000059588	Calcrl	AV071593|CRLR	calcitonin receptor-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-68675208-2	chr16	68675108	68675308	+	690.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F3|LINE|L1	-1054300.0	NM_178721	239857.0	Mm.394300	NM_178721	ENSMUSG00000064115	Cadm2	2900078E11Rik|9330131D06|A830029E02Rik|Igdf4d|Igsf4d|NECL3|SynCAM 2|SynCAM2	cell adhesion molecule 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-113911270-2	chr13	113911170	113911370	+	855.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172595, intron 1 of 4)	intron (NM_172595, intron 1 of 4)	116762.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-45566706-3	chr14	45566611	45566811	+	781.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	23001.0	NR_045809	67651.0	Mm.55930	NR_045809	ENSMUSG00000115324	4930527F14Rik	-	RIKEN cDNA 4930527F14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-52121026-2	chr12	52120926	52121126	+	544.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029760, intron 3 of 10)	intron (NM_029760, intron 3 of 10)	23280.0	NM_029760	76826.0	Mm.244781	NM_029760	ENSMUSG00000035142	Nubpl	2410170E07Rik	nucleotide binding protein-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-18055591-4	chr3	18055496	18055696	+	851.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_021560, exon 1 of 1)	exon (NM_021560, exon 1 of 1)	1271.0	NM_021560	59058.0	Mm.149938	NM_021560	ENSMUSG00000025128	Bhlhe22	Beta3|Beta3a|Bhlhb5	basic helix-loop-helix family, member e22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-57436530-1	chr1	57436430	57436630	+	583.0	f0_balb.idr	Intergenic	Intergenic	-29856.0	NM_001302963	68736.0	Mm.288490	NM_001037742	ENSMUSG00000048495	Tyw5	1110034B05Rik	tRNA-yW synthesizing protein 5	protein-coding	0.807528149978722	0.357242596513323	0.350380142992377	0.875753617552289	0.817852218927747	0.358789005699317	0.9268967047079	0.346008355570906	0.109950453205565	0.953211659262449	1
Merged-chr2-34965465-2	chr2	34965365	34965565	+	594.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3693.0	NM_001326601	22029.0	Mm.239514	NM_009421	ENSMUSG00000026875	Traf1	4732496E14Rik	TNF receptor-associated factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-86241018-2	chr16	86240918	86241118	+	553.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3A|LINE|L1	-339893.0	NM_011782	23794.0	Mm.112933	NM_011782	ENSMUSG00000022894	Adamts5	9530092O11Rik|ADAM-TS5|ADAMTS1|ADAMTS11|ADMP-2|AI481094|ASMP-2	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 5 (aggrecanase-2)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-20967815-2	chr9	20967715	20967915	+	936.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_010333, exon 2 of 2)	exon (NM_010333, exon 2 of 2)	-7927.0	NM_001199432	13433.0	Mm.128580	NM_010066	ENSMUSG00000004099	Dnmt1	Cxxc9|Dnmt|Dnmt1o|MCMT|MTase|Met-1|Met1|MommeD2|m.MmuI	DNA methyltransferase (cytosine-5) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-32137041-2	chr9	32136941	32137141	+	684.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001195632, intron 2 of 21)	MLTR11B|LTR|ERVK	20905.0	NM_001195632	330914.0	Mm.46683	NM_177379	ENSMUSG00000041444	Arhgap32	3426406O18Rik|Gc-gap|Grit|Px-rics|Rics|mKIAA0712|p200Rhogap|p250Gap	Rho GTPase activating protein 32	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-136808205-4	chr6	136808102	136808302	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177688)	promoter-TSS (NM_177688)	-46.0	NM_177688	232440.0	Mm.154564	NM_177688	ENSMUSG00000060032	H2afj	E130307C13	H2A histone family, member J	protein-coding	4.25492770323266	4.63469053104073	5.19577606469268	3.59266734867262	4.04105708646522	3.95362535061016	4.61895896710658	4.44277777085469	-0.315933560513578	0.482088562812007	0.930019065808521
Merged-chr13-81760557-3	chr13	81760469	81760669	+	862.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22678.0	NM_007684	12626.0	Mm.12481	NM_007684	ENSMUSG00000021537	Cetn3	MmCEN3	centrin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-34288476-2	chr5	34288376	34288576	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001015039)	promoter-TSS (NM_001015039)	-152.0	NM_001015039	231125.0	Mm.113388	NM_001015039	ENSMUSG00000037224	Zfyve28	9630058O20Rik|Gm146|mKIAA1643	zinc finger, FYVE domain containing 28	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59729744-2	chr15	59729644	59729844	+	903.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	65215.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-131913412-1	chr4	131913312	131913512	+	724.0	f0_balb.idr	non-coding (NR_102394, exon 3 of 3)	non-coding (NR_102394, exon 3 of 3)	6617.0	NR_102394	545681.0	Mm.2478	NR_102393	ENSMUSG00000085667	Gm12992	-	predicted gene 12992	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-67463885-3	chr5	67463781	67463981	+	737.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015582)	promoter-TSS (NR_015582)	-17.0	NR_110363	320479.0	Mm.387187	NR_015582	ENSMUSG00000107385	C330024D21Rik	-	RIKEN cDNA C330024D21 gene	ncRNA	-0.446637072568935	-0.57200228615298	-0.575253013574444	-0.577750527371891	-0.217939008074898	-0.571267416329887	-0.574537359631907	-0.0627969641855859	2.41514119509057	0.363742572288899	1
Merged-chr15-59744670-4	chr15	59744562	59744762	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50297.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-107376541-2	chr11	107376441	107376641	+	784.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 1 of 9)	intron (NR_153311, intron 1 of 9)	94179.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-54902720-4	chr18	54902619	54902819	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360787, intron 2 of 8)	intron (NM_001360787, intron 2 of 8)	87461.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-96981030-2	chr11	96980930	96981130	+	593.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3342.0	NM_001080964	78912.0	Mm.491183	NM_030220	ENSMUSG00000018678	Sp2	4930480I16Rik|mKIAA0048	Sp2 transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-53427369-1	chr19	53427269	53427469	+	551.0	f1_balb.idr	Intergenic	Intergenic	-36735.0	NM_172429	76479.0	Mm.313687	NM_172429	ENSMUSG00000025024	Smndc1	-	survival motor neuron domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-77100033-1	chr12	77099933	77100133	+	563.0	f0_balb.idr	Intergenic	Intergenic	-137785.0	NM_001146176	17187.0	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-129212622-1	chr6	129212522	129212722	+	1000.0	f1_balb.idr	Intergenic	Intergenic	25423.0	NR_040265	76432.0	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	-0.149203076048871	-0.134904114741184	-0.139596767341455	0.154095888233705	0.410285244963045	-0.133845202326535	0.428289832767842	-0.142580636589173	2.07753369035051	0.383661779805159	1
Merged-chr10-17951040-4	chr10	17950912	17951112	+	838.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2945.0	NM_001033432	380629.0	Mm.276430	NM_001033432	ENSMUSG00000039879	Heca	Gm869|HDC|HDCL	hdc homolog, cell cycle regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-55355139-2	chr12	55355039	55355239	+	996.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025373, intron 4 of 6)	intron (NM_025373, intron 4 of 6)	-29083.0	NM_001310583	26443.0	Mm.30210	NM_011968	ENSMUSG00000021024	Psma6	IOTA	proteasome (prosome, macropain) subunit, alpha type 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-86062609-2	chr1	86062509	86062709	+	754.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-2010.0	NM_027357	70247.0	Mm.280013	NM_027357	ENSMUSG00000026229	Psmd1	2410026J11Rik|P112|S1	proteasome (prosome, macropain) 26S subunit, non-ATPase, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-103134476-2	chr11	103134376	103134576	+	753.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001130515, intron 2 of 2)	intron (NM_001130515, intron 2 of 2)	1117.0	NM_027658	71059.0	Mm.273871	NM_027658	ENSMUSG00000043372	Hexim2	4933402L21Rik	hexamethylene bis-acetamide inducible 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-19216460-4	chr10	19216354	19216554	+	981.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Zaphod|DNA|hAT-Tip100	49216.0	NR_038022	100504265.0	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	2.32593564784637	1.26121262967224	2.5284969604117	1.93927495343913	2.07955794779659	1.26742601291636	2.54893881818889	1.94933028036772	-0.143803570956311	0.890781493334016	0.998431161219273
Merged-chr10-80681358-2	chr10	80681258	80681458	+	630.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-5065.0	NM_021462	17347.0	Mm.42126	NM_021462	ENSMUSG00000020190	Mknk2	2010016G11Rik|Gprk7|Mnk2	MAP kinase-interacting serine/threonine kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-126537778-2	chr4	126537678	126537878	+	550.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-4320.0	NM_153177	76850.0	Mm.86705	NM_153177	ENSMUSG00000042500	Ago4	5730550L01Rik|AI481660|Eif2c4	argonaute RISC catalytic subunit 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120276630-3	chr8	120276527	120276727	+	857.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48397.0	NR_110496	434353.0	Mm.411793	NR_110496	ENSMUSG00000097960	A330074K22Rik	-	RIKEN cDNA A330074K22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-192092210-2	chr1	192092110	192092310	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011633, intron 1 of 9)	intron (NM_011633, intron 1 of 9)	389.0	NM_011633	22033.0	Mm.380491	NM_011633		Traf5	-	TNF receptor-associated factor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120078284-3	chr8	120078204	120078404	+	801.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23168.0	NM_133967	102193.0	Mm.240076	NM_133967	ENSMUSG00000031823	Zdhhc7	AL024087|Gramp2	zinc finger, DHHC domain containing 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-33847746-2	chr9	33847646	33847846	+	974.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-194625.0	NR_040744	77119.0	Mm.367930	NR_040744	ENSMUSG00000098758	7630403G23Rik	TH-cre|Tg(Th-cre)1Tmd	RIKEN cDNA 7630403G23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45560867-2	chr7	45560767	45560967	+	648.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025330, intron 5 of 8)	intron (NM_025330, intron 5 of 8)	5939.0	NM_025330	66065.0	Mm.285710	NM_025330	ENSMUSG00000030825	Hsd17b14	0610039E24Rik|Dhrs10|retSDR3	hydroxysteroid (17-beta) dehydrogenase 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-138618113-4	chr1	138618020	138618220	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021605, intron 1 of 9)	intron (NM_021605, intron 1 of 9)	1637.0	NM_021605	59125.0	Mm.143817	NM_021605	ENSMUSG00000026393	Nek7	2810460C19Rik|AU020186	NIMA (never in mitosis gene a)-related expressed kinase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64345229-2	chr5	64345129	64345329	+	858.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 17 of 18)	intron (NM_001289514, intron 17 of 18)	114872.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-61110780-2	chr18	61110680	61110880	+	719.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037859, intron 4 of 21)	intron (NM_001037859, intron 4 of 21)	5208.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-104590129-2	chr8	104590029	104590229	+	670.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4_|SINE|ID	-1339.0	NM_001024606	382051.0	Mm.290750	NM_001024606	ENSMUSG00000048371	Pdp2	4833426J09Rik|Gm1705|mKIAA1348	pyruvate dehyrogenase phosphatase catalytic subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101317971-3	chr15	101317866	101318066	+	734.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	24754.0	NR_033803	77717.0	Mm.391998	NR_033803	ENSMUSG00000075408	6030408B16Rik	AI225877	RIKEN cDNA 6030408B16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-69537571-4	chr18	69537441	69537641	+	935.6749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 6 of 19)	intron (NM_001361128, intron 6 of 19)	191381.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-57571480-4	chr18	57571364	57571564	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029290, intron 3 of 6)	intron (NM_029290, intron 3 of 6)	-19067.0	NR_015494	75084.0	Mm.243841	NR_015494	ENSMUSG00000086607	4930511M06Rik	-	RIKEN cDNA 4930511M06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75653401-4	chr11	75653314	75653514	+	997.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080774, intron 1 of 31)	intron (NM_001080774, intron 1 of 31)	1264.0	NM_001080774	17913.0	Mm.234502	NM_008659	ENSMUSG00000017774	Myo1c	C80397|MMIb|MYO1E|NMI|mm1beta|myr2	myosin IC	protein-coding	1.20913133035473	1.51083451406302	0.784833367575482	1.13827162995238	0.937449414565112	0.802273491683072	1.86812286336265	1.52400310854596	0.674495289097148	0.621324001106892	0.979537295922371
Merged-chr3-76666728-2	chr3	76666628	76666828	+	738.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253719, intron 15 of 15)	intron (NM_001253719, intron 15 of 15)	591145.0	NM_001253719	213262.0	Mm.379337	NM_178673	ENSMUSG00000034098	Fstl5	9130207J01Rik	follistatin-like 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-112379144-4	chr2	112379009	112379209	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024254)	promoter-TSS (NM_024254)	-102.0	NM_024254	72425.0	Mm.425091	NM_024254	ENSMUSG00000027132	Katnbl1	2410042D21Rik|AA166487|AA473307|AI467442	katanin p80 subunit B like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-124827637-3	chr8	124827540	124827740	+	745.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198632, intron 8 of 9)	intron (NM_198632, intron 8 of 9)	34621.0	NM_198632	330863.0	Mm.422769	NM_198632	ENSMUSG00000036913	Trim67	D130049O21Rik|TNL	tripartite motif-containing 67	protein-coding	1.10104007517089	0.963103813961678	0.940669752372852	1.88096803947605	2.3794968504772	2.14665776900991	1.71567629529701	1.16037149466774	1.93376971435072	0.117949808802241	0.538905416826286
Merged-chr10-11369977-1	chr10	11369877	11370077	+	650.5	f0_balb.idr	intron (NM_010146, intron 1 of 3)	ORR1G|LTR|ERVL-MaLR	26532.0	NM_010146	13853.0	Mm.89946	NM_010146	ENSMUSG00000055493	Epm2a	TG-B|Tg(TcraK,TcrbK)TG-BFlv	epilepsy, progressive myoclonic epilepsy, type 2 gene alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-47233294-4	chr13	47233166	47233366	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146042, intron 4 of 7)	intron (NM_146042, intron 4 of 7)	39263.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	3.05527894214518	3.26707140530289	2.66256063728587	2.4579580657362	3.52417402937036	1.87735970443382	1.81434646890577	3.23431554854766	-0.0709806645702206	0.928995824270979	0.998431161219273
Merged-chr5-130196426-2	chr5	130196326	130196526	+	832.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359233, intron 3 of 7)	B1F1|SINE|Alu	9246.0	NM_019983	56715.0	Mm.288639	NM_019983	ENSMUSG00000025340	Rabgef1	Rab5ef|Rabex5|Rin2	RAB guanine nucleotide exchange factor (GEF) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70241152-1	chr8	70241052	70241252	+	968.0	f1_c57bl6.idr	intron (NM_172755, intron 2 of 10)	intron (NM_172755, intron 2 of 10)	-6730.0	NM_133972	76813.0	Mm.383251	NM_133972	ENSMUSG00000002343	Armc6	2410153K17Rik|AW554412	armadillo repeat containing 6	protein-coding	0.95558267715345	0.253562262230246	0.246933823323643	0.7799864156765	0.721654641590868	0.453704349922876	0.248396954664707	0.242705801891816	-1.05012906974411	0.590691952418765	1
Merged-chr19-3882997-2	chr19	3882897	3883097	+	645.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271496, intron 3 of 11)	RSINE1|SINE|B4	22233.0	NM_016921	27060.0	Mm.271689	NM_016921	ENSMUSG00000001750	Tcirg1	ATP6N1C|ATP6a3|Atp6i|OC-116|OPTB1|Stv1|TIRC7|Vph1|oc	T cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 protein A3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-108689307-2	chr12	108689207	108689407	+	561.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001163395)	TTS (NM_001163395)	12999.0	NM_001171002	70059.0	Mm.207605	NM_027299	ENSMUSG00000021263	Degs2	2210008A03Rik|AI852933|DES2	delta(4)-desaturase, sphingolipid 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128008426-3	chr10	128008327	128008527	+	692.711121	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013786)	promoter-TSS (NM_013786)	-816.0	NM_001359377	27400.0	Mm.26719	NM_013786	ENSMUSG00000025396	Hsd17b6	17betaHSD9|Hsd17b9|Rdh8	hydroxysteroid (17-beta) dehydrogenase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-122138442-4	chr7	122138358	122138558	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021608, intron 4 of 5)	intron (NM_021608, intron 4 of 5)	5417.0	NM_021608	59288.0	Mm.478285	NM_021608	ENSMUSG00000030868	Dctn5	4930427E12Rik|C78178|b2b315Clo	dynactin 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101128813-2	chr15	101128778	101128978	+	797.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001277255, intron 1 of 11)	intron (NM_001277255, intron 1 of 11)	356.0	NM_001277257	11482.0	Mm.279542	NM_009612	ENSMUSG00000000530	Acvrl1	AI115505|AI427544|Acvrlk1|Alk1	activin A receptor, type II-like 1	protein-coding	0.748837541767738	0.464349046194914	0.453569678111407	1.0643059176533	0.433034320960579	1.50626162645648	0.455961453584546	1.18177105868954	1.27494295700778	0.462361188141563	0.921194606787634
Merged-chr19-11611676-1	chr19	11611576	11611776	+	549.0	f0_c57.idr	Intergenic	Intergenic	-6872.0	NM_026835	68774.0	Mm.290390	NM_026835	ENSMUSG00000024679	Ms4a6d	1110058E16Rik|AI447446|Ms4a11	membrane-spanning 4-domains, subfamily A, member 6D	protein-coding	1.08598490287446	1.07786212626868	0.445226063296827	0.607964819999209	0.710839048372489	0.454840111624597	0.446959125717702	0.992238953081535	-0.897122868343099	0.597980660406325	1
Merged-chr10-111997818-2	chr10	111997718	111997918	+	826.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028608)	promoter-TSS (NM_028608)	-554.0	NM_028608	73690.0	Mm.173790	NM_028608	ENSMUSG00000056888	Glipr1	2410114O14Rik|RTVP-1|RTVP1|mRTVP-1	GLI pathogenesis-related 1 (glioma)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-3143325-2	chr11	3143216	3143416	+	1000.0	f0_balb.idr|f1_balb.idr	exon (NM_030207, exon 20 of 33)	exon (NM_030207, exon 20 of 33)	19295.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31195811-2	chr14	31195711	31195911	+	675.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347583, intron 3 of 13)	intron (NM_001347583, intron 3 of 13)	11015.0	NM_022656	64652.0	Mm.298728	NM_022656	ENSMUSG00000021910	Nisch	1200007D05Rik|3202002H23Rik|AW494485|I-1|edsn	nischarin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-113482746-4	chr6	113482669	113482869	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133930)	promoter-TSS (NM_133930)	-587.0	NM_133930	171508.0	Mm.41593	NM_133930	ENSMUSG00000030284	Creld1	AI843811|i11E7	cysteine-rich with EGF-like domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-67308437-4	chr18	67308353	67308553	+	823.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053261, intron 3 of 7)	intron (NM_053261, intron 3 of 7)	19230.0	NM_053261	114663.0	Mm.34079	NM_053261	ENSMUSG00000024525	Impa2	2210415D20Rik|AI326924|AW259601	inositol (myo)-1(or 4)-monophosphatase 2	protein-coding	-0.341548005186802	-0.461950676844805	-0.465207319575118	-0.0758052411959477	-0.337922102115331	-0.461213633920307	-0.464490881199752	-0.0703859597097778	0.0318375429219428	0.989636970963125	1
Merged-chr15-73072832-2	chr15	73072732	73072932	+	810.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11628.0	NM_001164643	76510.0	Mm.158902	NM_029640	ENSMUSG00000047921	Trappc9	1810044A24Rik|2900005P22Rik|4632408O18Rik|Ibp|Nibp|TRS130|mKIAA1882	trafficking protein particle complex 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72144357-2	chr6	72144257	72144457	+	830.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001035228, intron 4 of 6)	intron (NM_001035228, intron 4 of 6)	-21160.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-128016886-2	chr1	128016786	128016986	+	684.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285945, intron 7 of 20)	intron (NM_001285945, intron 7 of 20)	85585.0	NM_027678	226409.0	Mm.425048	NM_027678	ENSMUSG00000036086	Zranb3	4933425L19Rik|AH2|AI316834|C730006D09	zinc finger, RAN-binding domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-4748256-4	chr6	4748164	4748364	+	671.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040611, intron 1 of 1)	CpG	958.0	NM_130877	170676.0	Mm.320575	NM_130877	ENSMUSG00000092035	Peg10	AA407948|Edr|HB-1|MEF3L|Mar2|Mart2|MyEF-3|Rtl2	paternally expressed 10	protein-coding	0.734434096283958	0.325457680446991	-0.0305109501685664	0.128201210359112	0.229149056296919	-0.0241353738113125	-0.0293637274242794	-0.033822331855148	-2.36689818071117	0.275983591804465	1
Merged-chr5-66150853-4	chr5	66150724	66150924	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001291226, exon 1 of 6)	5' UTR (NM_001291226, exon 1 of 6)	154.0	NM_001291226	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	4.46465930569141	4.01516882898513	3.80540004363284	4.74638457358749	4.4245657881454	4.11732082577373	2.64307189908808	4.22317483043366	-0.402598434726612	0.423437059719984	0.900460846988572
Merged-chr9-90105680-4	chr9	90105596	90105796	+	925.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039147, intron 3 of 12)	intron (NM_001039147, intron 3 of 12)	9124.0	NM_001039147	21761.0	Mm.426209	NM_024431	ENSMUSG00000062270	Morf4l1	MORFRG15|MRG15|TEG-189|Tex189|mKIAA4002	mortality factor 4 like 1	protein-coding	1.32038361521283	3.77439452866232	2.16366562098213	2.9542239354434	2.42105803613198	3.49438601761438	2.50720799163478	2.55478786953894	-0.0776797669305293	0.928242715430525	0.998431161219273
Merged-chr4-150626974-2	chr4	150626874	150627074	+	565.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	25200.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101407419-2	chr7	101407319	101407519	+	773.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001040111, intron 29 of 33)	intron (NM_001040111, intron 29 of 33)	13031.0	NM_198096	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-43301138-2	chr13	43301038	43301238	+	593.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033399, intron 1 of 1)	intron (NM_001033399, intron 1 of 1)	3034.0	NM_001033399	328232.0	Mm.441399	NM_001033399	ENSMUSG00000051335	Gfod1	9630032O13|AI850995	glucose-fructose oxidoreductase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-48790833-2	chr7	48790733	48790933	+	710.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028031, intron 1 of 16)	intron (NM_028031, intron 1 of 16)	1830.0	NM_028031	243983.0	Mm.279116	NM_028031	ENSMUSG00000030471	Zdhhc13	2410004E01Rik|C530010M18|HIP3RP|Hip14l|kojak|skc4	zinc finger, DHHC domain containing 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105473417-2	chr8	105473317	105473517	+	549.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175160, intron 11 of 13)	intron (NM_175160, intron 11 of 13)	-1995.0	NM_026481	67971.0	Mm.29358	NM_026481	ENSMUSG00000014846	Tppp3	2700055K07Rik|CGI-38|Ceacam9|mmCGM8	tubulin polymerization-promoting protein family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-52070052-4	chr3	52069939	52070139	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	34967.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-29879880-3	chr11	29879783	29879983	+	957.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146016, intron 7 of 41)	intron (NM_146016, intron 7 of 41)	-54215.0	NM_176829	216622.0	Mm.443260	NM_176829	ENSMUSG00000078157	4931440F15Rik	Fem1ab	RIKEN cDNA 4931440F15 gene	protein-coding	-0.490506641279397	0.115615557354426	-0.447383080844414	-0.634519533127623	-0.638656015772491	-0.626954300719709	-0.630759294094345	-0.634008460572542	-3.37636662790847	0.192039350669585	1
Merged-chr3-36473469-4	chr3	36473358	36473558	+	876.6749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009673, intron 2 of 12)	intron (NM_009673, intron 2 of 12)	2066.0	NR_105976	102466786.0		NR_105976	ENSMUSG00000098808	Mir7009	Gm27472|mmu-mir-7009	microRNA 7009	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69033885-5	chr11	69033804	69034004	+	836.233337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001281465, intron 17 of 22)	intron (NM_001281465, intron 17 of 22)	-11733.0	NM_011496	20877.0	Mm.3488	NM_011496	ENSMUSG00000020897	Aurkb	AIM-1|AIRK2|AL022959|Aik2|Aim1|Ark2|AurB|IPL1|STK-1|Stk12|Stk5	aurora kinase B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-87446133-4	chr17	87446012	87446212	+	992.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007589, intron 1 of 5)	CpG	823.0	NM_001355703	12314.0	Mm.329243	NM_007589	ENSMUSG00000036438	Calm2	1500001E21Rik|AL024017|Cam2|CamC	calmodulin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-70111560-4	chr12	70111442	70111642	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_104398)	promoter-TSS (NR_104398)	87.0	NR_104398	18080.0	Mm.244047	NM_008697	ENSMUSG00000021068	Nin	3110068G20Rik|AI385615|AU024711|mKIAA1565	ninein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-6387211-2	chr15	6387111	6387311	+	803.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037905, intron 1 of 13)	intron (NM_001037905, intron 1 of 13)	463.0	NM_001310446	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139742854-4	chr5	139742753	139742953	+	974.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-6520.0	NM_174850	231830.0	Mm.240510	NM_174850	ENSMUSG00000036718	Micall2	A930021H16Rik|JRAB|MICAL-L2|mFLJ00139	MICAL-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-156863044-4	chr2	156862951	156863151	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015591)	promoter-TSS (NR_015591)	-71.0	NM_026124	67388.0	Mm.29264	NM_026124	ENSMUSG00000027637	1110008F13Rik	AI316789	RIKEN cDNA 1110008F13 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-116099816-2	chr9	116099703	116099903	+	806.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029575, intron 5 of 6)	intron (NM_029575, intron 5 of 6)	75560.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	-0.778082596538266	-1.01822870734921	-1.02945680142399	-1.03348344941628	-0.568232152040811	-1.01579553252409	-1.02691500703827	-1.0331489920742	0.87297571659195	0.788523652777195	1
Merged-chr10-96351526-4	chr10	96351421	96351621	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	125314.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-21137103-2	chr14	21137003	21137203	+	784.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_134079, intron 3 of 10)	intron (NM_134079, intron 3 of 10)	60951.0	NM_001243041	11534.0	Mm.188734	NM_134079	ENSMUSG00000039197	Adk	2310026J05Rik|5033405D03Rik|AI255373|AI987814|Ak	adenosine kinase	protein-coding	-1.50811478453619	-0.99851579554048	-1.48484165847197	-1.49312904261012	-1.50577282675516	-1.47256636097272	-1.48255773576353	-1.49164560481169	-2.24133836997777	0.518237887813808	1
Merged-chr5-142911140-2	chr5	142911040	142911240	+	840.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-4386.0	NM_007393	11461.0	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-66778962-2	chr1	66778862	66779062	+	616.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357157, intron 3 of 14)	intron (NM_001357157, intron 3 of 14)	29832.0	NM_001357157	68691.0	Mm.240912	NM_177645	ENSMUSG00000026004	Kansl1l	1110028C15Rik|1190030G24|AI427598|C430010P07Rik|mKIAA4189	KAT8 regulatory NSL complex subunit 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84363917-3	chr8	84363791	84363991	+	777.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51473.0	NM_001252060	12286.0	Mm.334658	NM_007578	ENSMUSG00000034656	Cacna1a	APCA|BI|Caca1a|Cacnl1a4|Cav2.1|Ccha1a|EA2|FHM|HPCA|MHP|MHP1|SCA6|alpha1A|la|nmf352|rkr|smrl|tg	calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	protein-coding	1.40509390953382	1.84522608821322	0.831052568760363	0.817294921844931	1.41833306430351	1.10064868257376	1.06659692897877	2.13121905483379	0.684646737296015	0.607396152639414	0.974576632476413
Merged-chr8-27176538-2	chr8	27176438	27176638	+	582.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F2|SINE|Alu	-1892.0	NM_001080813	75767.0	Mm.205335	NM_029423	ENSMUSG00000031488	Rab11fip1	2010200K21Rik|4833414G05Rik|Rcp	RAB11 family interacting protein 1 (class I)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-82448317-4	chr12	82448222	82448422	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167983, intron 22 of 23)	intron (NM_001167983, intron 22 of 23)	136973.0	NM_172579	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-19857851-3	chr15	19857745	19857945	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	672472.0	NR_155419	102639102.0	Mm.463245	NR_155419	ENSMUSG00000115803	Gm35496	-	predicted gene, 35496	ncRNA	5.28991039622736	5.6403413628875	5.39112485732689	5.08408486904977	1.89140321600211	1.65627978922574	1.88030637100267	1.78679244760412	-5.78049493014302	3.26482026080038e-13	1.19912184150254e-10
Merged-chr6-124861763-2	chr6	124861663	124861863	+	716.666626	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001355257, exon 3 of 6)	5' UTR (NM_001355257, exon 3 of 6)	2220.0	NM_013533	14788.0	Mm.2514	NM_013533	ENSMUSG00000038390	Gpr162	A-2|BC031437|Grca	G protein-coupled receptor 162	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-105436176-2	chr12	105436076	105436276	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17680.0	NM_001252508	268595.0	Mm.2388	NM_001252508	ENSMUSG00000094910	D430019H16Rik	AI852661	RIKEN cDNA D430019H16 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-169790941-2	chr2	169790836	169791036	+	571.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_080455, intron 1 of 1)	intron (NM_080455, intron 1 of 1)	157290.0	NM_080455	228911.0	Mm.315789	NM_080455	ENSMUSG00000047907	Tshz2	2900073F20Rik|B830045G17|Mtsh2|Sdccag33l|Tsh2|Zfp218|mKIAA4248|teashirt2	teashirt zinc finger family member 2	protein-coding	0.082819573551057	-0.00247333484609233	-0.307489461470287	0.0497156397200821	-0.312921222791025	-0.303843956160231	-0.306837444514188	-0.309361663403086	-3.49998897194112	0.154611232114623	1
Merged-chr12-31952807-2	chr12	31952670	31952870	+	632.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2525.0	NM_001361928	73389.0	Mm.390461	NM_153198	ENSMUSG00000002996	Hbp1	1700058O05Rik|BE629963|C330012F01Rik|C86454	high mobility group box transcription factor 1	protein-coding	-0.0958797372510727	0.577513439921655	-0.0832654064606163	0.762080299348162	0.0647824595161015	-0.0758055229654064	-0.081918905570042	-0.0871624323459645	-3.21346963103633	0.154331879916571	1
Merged-chr15-89078412-4	chr15	89078309	89078509	+	996.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026485, intron 1 of 9)	intron (NM_026485, intron 1 of 9)	2345.0	NM_001355617	67976.0	Mm.284710	NM_026485	ENSMUSG00000015363	Trabd	5730502D15Rik|AL023039	TraB domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-43201069-4	chr17	43200967	43201167	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42776.0	NR_045153	545207.0	Mm.329050	NR_045153		E130008D07Rik	-	RIKEN cDNA E130008D07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98866869-2	chr11	98866769	98866969	+	596.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_197940, intron 1 of 7)	B1_Mus1|SINE|Alu	3271.0	NM_197940	68524.0	Mm.28661	NM_197940	ENSMUSG00000038013	Wipf2	1110014J05Rik|5730509C05Rik|AA407487|Gm1176|Wich|Wire	WAS/WASL interacting protein family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-130068199-1	chr2	130068099	130068299	+	614.0	f1_c57bl6.idr	Intergenic	Intergenic	-32195.0	NM_001033197	99169.0	Mm.404938	NM_001033197		AU015228	-	expressed sequence AU015228	protein-coding	0.44044455493084	1.4691960889425	1.49445867215273	0.457524691637653	0.443014429278476	1.4845291575258	0.470451169700929	0.459296007061704	-0.991018769764781	0.757185695990871	0.998431161219273
Merged-chr11-102427288-2	chr11	102427188	102427388	+	941.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-3034.0	NM_008175	14824.0	Mm.1568	NM_008175	ENSMUSG00000034708	Grn	Pgrn|epithelin	granulin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-140999032-4	chr7	140998960	140999160	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11684.0	NM_025378	66141.0	Mm.141021	NM_025378	ENSMUSG00000025492	Ifitm3	1110004C05Rik|Cd225|Cdw217|DSPA2b|Fgls|IP15|mil-1	interferon induced transmembrane protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131025959-4	chr1	131025871	131026071	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6126.0	NM_010548	16153.0	Mm.874	NM_010548	ENSMUSG00000016529	Il10	CSIF|Il-10	interleukin 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-5115278-3	chr5	5115171	5115371	+	969.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011074, intron 6 of 14)	intron (NM_011074, intron 6 of 14)	150797.0	NM_001310448	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-106371263-1	chr9	106371163	106371363	+	576.0	f1_c57bl6.idr	intron (NM_153459, intron 2 of 2)	intron (NM_153459, intron 2 of 2)	2631.0	NM_153459	235584.0	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101254114-4	chr15	101254006	101254206	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-12740.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69796488-1	chr11	69796388	69796588	+	667.0	f1_c57bl6.idr	promoter-TSS (NM_009601)	promoter-TSS (NM_009601)	-551.0	NM_009601	11443.0	Mm.86425	NM_009601	ENSMUSG00000041189	Chrnb1	Achr-2|Acrb	cholinergic receptor, nicotinic, beta polypeptide 1 (muscle)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-108202738-2	chr3	108202638	108202838	+	923.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175183, intron 11 of 11)	intron (NM_175183, intron 11 of 11)	-1904.0	NM_001081320	72023.0	Mm.246391	NM_028061	ENSMUSG00000048796	Cyb561d1	1600010M23Rik|AI605489|AW457162	cytochrome b-561 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-64574577-2	chr1	64574477	64574677	+	907.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037726, intron 5 of 6)	intron (NM_001037726, intron 5 of 6)	41773.0	NM_001037726	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70370680-4	chr14	70370569	70370769	+	971.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19245.0	NM_001135151	213053.0	Mm.270647	NM_144808	ENSMUSG00000022094	Slc39a14	FAD-123|ZIP-14|Zip14|fad123	solute carrier family 39 (zinc transporter), member 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-160724053-1	chr2	160723953	160724153	+	701.0	f1_c57bl6.idr	Intergenic	Intergenic	-7257.0	NM_021280	18803.0	Mm.44463	NM_021280	ENSMUSG00000016933	Plcg1	AI894140|Cded|Plc-1|Plc-gamma1|Plcg-1	phospholipase C, gamma 1	protein-coding	1.14135737816339	1.74143416400182	1.28507415294609	0.665324678556115	0.439264880399613	0.479808774672742	0.466929407006279	0.455707240256676	-4.80188730003733	0.00410553394295669	0.0573659117790306
Merged-chr18-46963593-4	chr18	46963496	46963696	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178377, intron 2 of 6)	intron (NM_178377, intron 2 of 6)	4720.0	NM_178377	69456.0	Mm.210734	NM_178377	ENSMUSG00000042705	Commd10	2310003A05Rik|AU019438|DRWMS2|Tg(Vav1-icre)A2Kio|Vav-cre|Vav-iCre|Vav1-Cre|VavCre	COMM domain containing 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88510917-2	chr3	88510817	88511017	+	567.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F1|SINE|Alu	-7565.0	NM_001002011	16905.0	Mm.243014	NM_019390	ENSMUSG00000028063	Lmna	Dhe	lamin A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-109457018-4	chr4	109456906	109457106	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013876, exon 2 of 3)	exon (NM_013876, exon 2 of 3)	19499.0	NM_013876	29864.0	Mm.392580	NM_013876	ENSMUSG00000028557	Rnf11	-	ring finger protein 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-53348807-2	chr11	53348707	53348907	+	775.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-1960.0	NM_033565	93736.0	Mm.395281	NM_033565	ENSMUSG00000049470	Aff4	AF5Q31|Alf4|Laf4l|MCEF	AF4/FMR2 family, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-80209519-2	chr5	80209419	80209619	+	682.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3B|LINE|L1	-811052.0	NM_001347367	319387.0	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-87018224-2	chr11	87018124	87018324	+	669.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24462.0	NM_001005341	77864.0	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-138229739-4	chr5	138229629	138229829	+	971.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001013773, exon 2 of 6)	5' UTR (NM_001013773, exon 2 of 6)	3825.0	NM_001013773	381680.0	Mm.156846	NM_001013773	ENSMUSG00000047592	Nxpe5	-	neurexophilin and PC-esterase domain family, member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115655999-2	chr5	115655899	115656099	+	639.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001080808, exon 7 of 9)	exon (NM_001080808, exon 7 of 9)	-2413.0	NR_151600	75665.0	Mm.233914	NM_001080808	ENSMUSG00000041609	Bicdl1	2210403N09Rik|BICDR-1|Ccdc64	BICD family like cargo adaptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-14240091-2	chr4	14239991	14240191	+	556.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_131155, intron 2 of 2)	intron (NR_131155, intron 2 of 2)	51218.0	NR_131155	100040030.0	Mm.366499	NR_131155		Gm2560	-	predicted gene 2560	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-8134893-2	chr8	8134793	8134993	+	804.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	525880.0	NM_010111	13642.0	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122265245-2	chr5	122265145	122265345	+	889.6875	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039153)	promoter-TSS (NM_001039153)	-785.0	NM_001039153	654470.0	Mm.28804	NM_001039153	ENSMUSG00000038593	Tctn1	G730031O11Rik|Tect1	tectonic family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-58516287-2	chr16	58516187	58516387	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357433, intron 1 of 10)	intron (NM_001357433, intron 1 of 10)	7139.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-112463186-1	chr14	112463086	112463286	+	808.0	f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	788071.0	NM_198865	75409.0	Mm.235097	NM_029273	ENSMUSG00000033214	Slitrk5	2610019D03Rik	SLIT and NTRK-like family, member 5	protein-coding	0.0380654814053157	0.89729163275713	1.11618521320916	0.0491465357516383	0.218123001493298	0.066002117903511	0.0575818203769876	0.0502999193031832	-3.54090201749661	0.0919429619226945	1
Merged-chr1-10267020-3	chr1	10266932	10267132	+	795.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14|LTR|ERV1	-34362.0	NM_001102430	211673.0	Mm.229141	NM_001102430	ENSMUSG00000067851	Arfgef1	ARFGEP1|BIG1|D130059B05Rik|D730028O18Rik|P200	ADP-ribosylation factor guanine nucleotide-exchange factor 1(brefeldin A-inhibited)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-110477872-2	chr13	110477772	110477972	+	609.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	82828.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-40693677-4	chr11	40693612	40693812	+	860.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199274, intron 1 of 6)	intron (NM_001199274, intron 1 of 6)	-1030.0	NM_134017	108645.0	Mm.293771	NM_134017	ENSMUSG00000042032	Mat2b	1110064C04Rik|2410018D16Rik|AI182287|AU022853|MAT-II|MATIIbeta|TGR	methionine adenosyltransferase II, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35137478-2	chr17	35137378	35137578	+	721.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252469, intron 2 of 23)	B1_Mm|SINE|Alu	1764.0	NM_001252469	224727.0	Mm.203962	NM_057171	ENSMUSG00000024392	Bag6	2410045D21Rik|AA408914|BAG-6|Bat3|D17H6S52E|G3|Scythe	BCL2-associated athanogene 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-117602806-2	chr13	117602706	117602906	+	649.166687	f1_balb.idr|f1_c57bl6.idr	exon (NM_010408, exon 1 of 8)	exon (NM_010408, exon 1 of 8)	486.0	NM_010408	15165.0	Mm.343429	NM_010408	ENSMUSG00000021730	Hcn1	Bcng1|C630013B14Rik|HAC2	hyperpolarization-activated, cyclic nucleotide-gated K+ 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-87375865-3	chr12	87375771	87375971	+	843.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011479, intron 1 of 11)	B3|SINE|B2	12484.0	NM_011479	20773.0	Mm.565	NM_011479	ENSMUSG00000021036	Sptlc2	LCB2|LCB2a|Spt2	serine palmitoyltransferase, long chain base subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-119306939-2	chr1	119306839	119307039	+	561.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	115309.0	NM_008381	16324.0	Mm.3092	NM_008381	ENSMUSG00000037035	Inhbb	-	inhibin beta-B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-59251150-2	chr4	59251050	59251250	+	578.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8901.0	NR_105031	101055769.0	Mm.421401	NR_105031		Gm12596	-	predicted gene 12596	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26237187-4	chr17	26237105	26237305	+	971.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001206335, intron 1 of 12)	intron (NM_001206335, intron 1 of 12)	7037.0	NM_207217	106581.0	Mm.28844	NM_207217	ENSMUSG00000024187	Fam234a	Itfg3	family with sequence similarity 234, member A	protein-coding	1.84860213260664	1.53078284757547	1.58881706935683	0.759926285752749	0.932029551797575	1.6709298867443	0.775917199848807	0.762122127635267	-1.4300328970728	0.320648308057437	0.8230933675809
Merged-chr7-45538720-5	chr7	45538510	45538710	+	974.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_148927, intron 8 of 19)	intron (NM_148927, intron 8 of 19)	12280.0	NM_148927	69217.0	Mm.274158	NM_148927	ENSMUSG00000040428	Plekha4	2410005C22Rik|C88169|Pepp1	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 4	protein-coding	1.83951577542552	1.6953761354572	1.8950390497887	1.05821654972525	1.38839452526302	2.09372046863317	2.01956528682921	1.27414315752524	0.251871168528201	0.82351882539228	0.998431161219273
Merged-chr5-135562974-1	chr5	135562874	135563074	+	870.0	f1_c57bl6.idr	intron (NM_001013412, intron 2 of 2)	MTD|LTR|ERVL-MaLR	595.0	NM_001013412	541307.0	Mm.376459	NM_001013412	ENSMUSG00000070464	Ccl26	Ccl26l	chemokine (C-C motif) ligand 26	protein-coding	0.831305674219724	1.83105870836262	2.2341437847134	0.860039433737533	1.7196687141721	1.16611436425089	1.99363450779389	0.862983762263745	-0.244937481059087	0.857820608467773	0.998431161219273
Merged-chr4-3770723-7	chr4	3770480	3770680	+	893.404785	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 10 of 12)	intron (NM_001111096, intron 10 of 12)	55616.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-92136902-3	chr5	92136790	92136990	+	926.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359197, intron 1 of 10)	intron (NM_001359197, intron 1 of 10)	835.0	NM_001359197	23881.0	Mm.290530	NM_011816	ENSMUSG00000029405	G3bp2	AA409541|E430034L04Rik|G3BP|mKIAA0660	GTPase activating protein (SH3 domain) binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43052877-4	chr4	43052792	43052992	+	872.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6061.0	NM_021468	22249.0	Mm.128892	NM_021468	ENSMUSG00000028456	Unc13b	Munc13-1|Munc13-2|Unc13a|Unc13h1|Unc13h2	unc-13 homolog B (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-88722951-2	chr10	88722851	88723051	+	893.599976	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	8150.0	NM_001037166	237433.0	Mm.478763	NM_001037166		Gm4925	EG237433	predicted gene 4925	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-84860139-4	chr17	84860053	84860253	+	991.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR50|LTR|ERVL	-69367.0	NM_028233	72416.0	Mm.217027	NM_028233	ENSMUSG00000024120	Lrpprc	3110001K13Rik|C76645|Gp130|Lrp130|Lsfc	leucine-rich PPR-motif containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83737471-4	chr11	83737371	83737571	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA4|LINE|L1	-9469.0	NM_183249	66107.0	Mm.902	NM_183249	ENSMUSG00000051748	Wfdc21	1100001G20Rik|Wdnm1-like	WAP four-disulfide core domain 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-90975149-4	chr1	90975072	90975272	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5552.0	NM_008998	19329.0	Mm.279780	NM_008998	ENSMUSG00000026304	Rab17	AW413472	RAB17, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-41573361-4	chr10	41573259	41573459	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358562, intron 36 of 47)	intron (NM_001358562, intron 36 of 47)	5343.0	NR_045341	70538.0	Mm.399807	NR_045341	ENSMUSG00000091370	5730435O14Rik	-	RIKEN cDNA 5730435O14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98836077-2	chr11	98835977	98836177	+	745.166687	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080925)	promoter-TSS (NM_001080925)	-708.0	NM_001080925	268480.0	Mm.340766	NM_001080925	ENSMUSG00000038020	Rapgefl1	B230105J10	Rap guanine nucleotide exchange factor (GEF)-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-46022697-4	chr16	46022546	46022746	+	750.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12233.0	NM_001134480	433022.0	Mm.380993	NM_001134480	ENSMUSG00000087141	Plcxd2	AW494639|EG433022	phosphatidylinositol-specific phospholipase C, X domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-65877178-1	chr17	65877078	65877278	+	779.0	f1_c57bl6.idr	intron (NM_009067, intron 1 of 9)	intron (NM_009067, intron 1 of 9)	7745.0	NM_001198949	19765.0	Mm.17009	NM_009067	ENSMUSG00000024096	Ralbp1	RLIP76|Rip1	ralA binding protein 1	protein-coding	-0.548148127287174	-0.534994719662482	0.263484604031121	-0.542612953676498	-0.547323257953237	-0.150462351890654	-0.53834130381974	-0.542031808161518	-1.50711037112802	0.587523960093481	1
Merged-chr16-92680734-2	chr16	92680634	92680834	+	593.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111022, intron 4 of 6)	intron (NM_001111022, intron 4 of 6)	16595.0	NM_001111023	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-63372696-2	chr14	63372596	63372796	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_007549)	TTS (NM_007549)	44491.0	NM_007549	12143.0	Mm.3962	NM_007549	ENSMUSG00000014453	Blk	-	B lymphoid kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-100615340-4	chr12	100615237	100615437	+	956.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153587, intron 5 of 17)	intron (NM_153587, intron 5 of 17)	-94515.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-8687496-2	chr8	8687402	8687602	+	546.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_176849, intron 1 of 3)	intron (NM_176849, intron 1 of 3)	2660.0	NR_106114	102465762.0		NR_106114	ENSMUSG00000098917	Mir7654	Gm27748|mmu-mir-7654	microRNA 7654	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-121059229-2	chr7	121059129	121059329	+	630.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_021554, intron 4 of 4)	B4A|SINE|B4	15301.0	NM_030691	80719.0	Mm.160384	NM_030691	ENSMUSG00000035004	Igsf6	-	immunoglobulin superfamily, member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-23763018-4	chr1	23762900	23763100	+	957.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172124, exon 1 of 4)	exon (NM_172124, exon 1 of 4)	1074.0	NM_172124	280645.0	Mm.471661	NM_172124	ENSMUSG00000026156	B3gat2	GlcAT-S|Glcats	beta-1,3-glucuronyltransferase 2 (glucuronosyltransferase S)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-30945653-2	chr14	30945553	30945753	+	577.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-2364.0	NM_001306078	16424.0	Mm.3227	NM_008406	ENSMUSG00000006529	Itih1	ITI-HC1|Intin1|Itih-1	inter-alpha trypsin inhibitor, heavy chain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-83875263-3	chr8	83875149	83875349	+	890.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-24849.0	NM_181039	330814.0	Mm.260733	NM_181039	ENSMUSG00000013033	Adgrl1	2900070I05Rik|AI182398|CLIBA|Lec2|Lphn1|mKIAA0821	adhesion G protein-coupled receptor L1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-13827061-4	chr9	13826963	13827163	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310721)	promoter-TSS (NM_001310721)	-10.0	NR_037622	74360.0	Mm.157212	NM_026665	ENSMUSG00000031922	Cep57	3110002L15Rik|4921510P06Rik|4931428M20Rik|AI467480|Tsp57|mKIAA0092	centrosomal protein 57	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-9946203-1	chr19	9946103	9946303	+	773.5	f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-34397.0	NR_073181	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	-0.503792992628731	-0.376005327276512	-0.87008328719357	-0.872340093189806	-0.875522084709624	-0.861335472410615	-0.869437378796228	-0.871946133530848	-2.99496329377639	0.319200436281031	1
Merged-chr2-91730330-7	chr2	91730235	91730435	+	997.5714109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_172669, exon 1 of 18)	5' UTR (NM_172669, exon 1 of 18)	197.0	NM_001080754	228361.0	Mm.436667	NM_172669	ENSMUSG00000040506	Ambra1	2310079H06Rik|A130023A14|AA474864|AV021921|D030051N19Rik|mKIAA1736	autophagy/beclin 1 regulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-56898411-2	chr14	56898311	56898511	+	646.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177627, intron 2 of 2)	RMER6A|LTR|ERVK	11568.0	NM_001360643	76007.0	Mm.31417	NM_029498	ENSMUSG00000021945	Zmym2	5830413P05Rik|FIM|MYM|RAMP|SCLL|Zfp198|Znf198	zinc finger, MYM-type 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69966865-2	chr11	69966765	69966965	+	600.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001193619, intron 2 of 4)	intron (NM_001193619, intron 2 of 4)	1444.0	NM_016887	53624.0	Mm.281896	NM_016887	ENSMUSG00000018569	Cldn7	-	claudin 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115340804-1	chr5	115340704	115340904	+	1000.0	f1_balb.idr	promoter-TSS (NM_026933)	promoter-TSS (NM_026933)	357.0	NM_029645	384281.0	Mm.229308	NM_029645	ENSMUSG00000029536	Gatc	2010003O18Rik	glutamyl-tRNA(Gln) amidotransferase, subunit C	protein-coding	-1.18378942727406	-1.15669478905697	-0.457913181653105	-1.17806440097404	-1.18323730008524	-1.15415234459186	-1.16577117532349	-1.17633933179771	-2.81844548480871	0.412768592413622	1
Merged-chr15-82048609-3	chr15	82048511	82048711	+	638.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-1013.0	NM_011482	20826.0	Mm.299312	NM_011482	ENSMUSG00000063480	Snu13	FA-1|Fta1|Nhp2l1|Ssfa1	SNU13 homolog, small nuclear ribonucleoprotein (U4/U6.U5)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-141050929-2	chr6	141050829	141051029	+	836.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-198340.0	NM_018779	54611.0	Mm.103728	NM_018779	ENSMUSG00000041741	Pde3a	A930022O17Rik|C87899	phosphodiesterase 3A, cGMP inhibited	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-42159685-1	chr12	42159585	42159785	+	569.0	f0_balb.idr	Intergenic	Intergenic	-673628.0	NM_010733	16981.0	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-34125709-2	chr16	34125609	34125809	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177357, intron 33 of 59)	intron (NM_177357, intron 33 of 59)	-158671.0	NM_009471	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-40226659-2	chr12	40226565	40226765	+	859.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045157, intron 2 of 2)	B2_Mm2|SINE|B2	3301.0	NR_045157	629820.0	Mm.435540	NR_045157	ENSMUSG00000035983	Gm7008	EG629820	predicted gene 7008	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-100410212-2	chr3	100410112	100410312	+	728.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-16193.0	NR_040543	73806.0	Mm.396549	NR_040543	ENSMUSG00000086923	4930406D18Rik	-	RIKEN cDNA 4930406D18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-16999624-4	chr11	16999526	16999726	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019549, intron 1 of 9)	intron (NM_019549, intron 1 of 9)	9092.0	NM_019549	56193.0	Mm.98232	NM_019549	ENSMUSG00000020120	Plek	2010300B13Rik	pleckstrin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-134341578-2	chr5	134341478	134341678	+	631.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15124.0	NR_039544	100628570.0		NR_039544	ENSMUSG00000093311	Mir3965	mmu-mir-3965|mu-mir-3965	microRNA 3965	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-94590276-1	chr11	94590176	94590376	+	562.5	f1_c57bl6.idr	intron (NM_153807, intron 1 of 15)	B1_Mus2|SINE|Alu	11510.0	NM_153807	264895.0	Mm.386885	NM_153807	ENSMUSG00000076435	Acsf2	-	acyl-CoA synthetase family member 2	protein-coding	-0.501796035533201	0.139110117102942	-0.493390582842328	0.0495687538010091	-0.501015189212223	-0.488377657939509	-0.492488009595812	-0.495997082908245	-3.51862483220824	0.19146640807655	1
Merged-chr16-75855631-4	chr16	75855534	75855734	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53632.0	NM_023380	67742.0	Mm.131406	NM_023380	ENSMUSG00000022876	Samsn1	4930571B16Rik|930571B16Rik|Hacs1|SLy2	SAM domain, SH3 domain and nuclear localization signals, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-33089468-4	chr17	33089378	33089578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001024950, exon 1 of 4)	exon (NM_001024950, exon 1 of 4)	111.0	NM_001024950	240068.0	Mm.121392	NM_001024950	ENSMUSG00000067424	Zfp563	D10628|D130054H01|NTfin7|Zfp413	zinc finger protein 563	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-124708701-4	chr4	124708606	124708806	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010213)	TTS (NM_010213)	-6155.0	NM_029157	75062.0	Mm.25779	NM_029157	ENSMUSG00000028902	Sf3a3	4930512K19Rik|60kDa	splicing factor 3a, subunit 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28991816-2	chr7	28991716	28991916	+	715.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355054, intron 17 of 31)	B3|SINE|B2	8962.0	NM_008279	26411.0	Mm.148278	NM_008279	ENSMUSG00000037337	Map4k1	Hpk1|mHPK1	mitogen-activated protein kinase kinase kinase kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-142763807-2	chr2	142763707	142763907	+	809.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355123, intron 12 of 26)	HAL1b|LINE|L1	137657.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-55505880-2	chr1	55505780	55505980	+	718.400024	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114663, intron 1 of 5)	Lx8|LINE|L1	99934.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-72354540-1	chr8	72354440	72354640	+	762.0	f1_c57bl6.idr	intron (NM_007944, intron 22 of 23)	intron (NM_007944, intron 22 of 23)	35478.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-32922421-2	chr12	32922321	32922521	+	795.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_044986, intron 3 of 5)	ORR1F|LTR|ERVL-MaLR	31368.0	NR_044986	74076.0	Mm.50114	NR_044986	ENSMUSG00000097494	4933406C10Rik	-	RIKEN cDNA 4933406C10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-134557284-2	chr7	134557184	134557384	+	576.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-113403.0	NM_001033420	330662.0	Mm.436572	NM_001033420	ENSMUSG00000058325	Dock1	9130006G06Rik|AI854900|D630004B07Rik|b2b3190Clo	dedicator of cytokinesis 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116108931-4	chr11	116108775	116108975	+	800.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205081, intron 1 of 5)	intron (NM_001205081, intron 1 of 5)	1360.0	NM_001205081	217333.0	Mm.347770	NM_172570	ENSMUSG00000020773	Trim47	2210023F24Rik	tripartite motif-containing 47	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-84217649-4	chr12	84217555	84217755	+	993.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163501, intron 1 of 12)	intron (NM_001163501, intron 1 of 12)	1226.0	NM_001163501	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-58920768-4	chr2	58920691	58920891	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362394, intron 10 of 13)	L1MA6|LINE|L1	165607.0	NM_029692	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-73038682-4	chr17	73038568	73038768	+	960.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA6|LINE|L1	-69317.0	NM_001177968	225010.0	Mm.329194	NM_001081071	ENSMUSG00000054469	Lclat1	AI181996|Agpat8|Alcat1|Gm91|Lycat	lysocardiolipin acyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5440547-8	chr17	5440459	5440659	+	999.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027457)	promoter-TSS (NM_027457)	-299.0	NM_027457	70544.0	Mm.46654	NM_027457	ENSMUSG00000004945	Tmem242	1110008A10Rik|2310046K16Rik|5730437N04Rik	transmembrane protein 242	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-100004794-4	chr12	100004700	100004900	+	959.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164426, intron 2 of 2)	MTE2a|LTR|ERVL-MaLR	40301.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59248622-1	chr15	59248522	59248722	+	604.0	f0_balb.idr	Intergenic	Intergenic	-58326.0	NR_045613	100416830.0	Mm.490788	NR_045613	ENSMUSG00000098528	Zfp572	4930472F24Rik	zinc finger protein 572	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-76244491-1	chr6	76244391	76244591	+	541.0	f1_balb.idr	Intergenic	L1_Mus1|LINE|L1	-997986.0	NR_155299	74342.0	Mm.292568	NM_028880	ENSMUSG00000060780	Lrrtm1	4632401D06Rik|AW125451	leucine rich repeat transmembrane neuronal 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-95192143-4	chr10	95192027	95192227	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001330138, intron 2 of 2)	intron (NM_001330138, intron 2 of 2)	-46302.0	NR_131146	628062.0		NR_131146	ENSMUSG00000112481	Gm29684	-	predicted gene, 29684	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-184791232-1	chr1	184791132	184791332	+	573.0	f1_balb.idr	intron (NM_001290273, intron 6 of 6)	intron (NM_001290273, intron 6 of 6)	20068.0	NM_001290273	66112.0	Mm.272457	NM_001081361	ENSMUSG00000026621	Marc1	1300013F15Rik|Mosc1	mitochondrial amidoxime reducing component 1	protein-coding	2.82632020442831	1.34176267536074	2.59918543531509	1.27585921043673	2.85002308555464	2.36482092026395	1.8004350345149	2.6274984923245	0.529061159589515	0.598384412650912	0.972303230574462
Merged-chr11-51636617-3	chr11	51636577	51636777	+	845.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025346)	promoter-TSS (NM_025346)	-781.0	NM_025346	66089.0	Mm.288183	NM_025346	ENSMUSG00000001054	Rmnd5b	0610039K22Rik|Gid2	required for meiotic nuclear division 5 homolog B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-71334230-4	chr14	71334124	71334324	+	974.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE-int|LTR|ERVL-MaLR	82951.0	NR_046076	100043132.0	Mm.399336	NR_046075	ENSMUSG00000115139	Gm4251	-	predicted gene 4251	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-45828663-4	chr9	45828555	45828755	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081373)	promoter-TSS (NM_001081373)	-17.0	NM_001081373	214552.0	Mm.260103	NM_172531	ENSMUSG00000043987	Cep164	AI450905|BC027092|D030051D21|mKIAA1052	centrosomal protein 164	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191841056-2	chr1	191840956	191841156	+	741.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19583.0	NM_010892	18005.0	Mm.33773	NM_010892	ENSMUSG00000026622	Nek2	AA617254|C77054	NIMA (never in mitosis gene a)-related expressed kinase 2	protein-coding	-2.18375600819439	-2.15556918946382	-2.16409311609999	-2.17109492323169	-2.18177734563694	-2.01960173909294	-2.16216348594872	-2.16984160310277	0.759018020146679	0.829933115115583	1
Merged-chr6-120540082-3	chr6	120539980	120540180	+	765.022217	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8781.0	NM_144815	214932.0	Mm.255322	NM_144815	ENSMUSG00000058979	Hdhd5	A930002G03Rik|Cecr5	haloacid dehalogenase like hydrolase domain containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-37154327-1	chr1	37154227	37154427	+	541.0	f0_balb.idr	Intergenic	Intergenic	-63951.0	NM_001282010	12790.0	Mm.214224	NM_009918	ENSMUSG00000026114	Cnga3	CNG3	cyclic nucleotide gated channel alpha 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-102606643-2	chr4	102606543	102606743	+	593.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001177980, exon 10 of 10)	3' UTR (NM_001177980, exon 10 of 10)	16800.0	NM_001177981	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-70830334-4	chr9	70830249	70830449	+	997.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001324473, intron 1 of 8)	intron (NM_001324473, intron 1 of 8)	104459.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-93244425-2	chr13	93244325	93244525	+	682.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-52008.0	NM_001361537	100715.0	Mm.242865	NM_133905	ENSMUSG00000042167	Papd4	8030446C20Rik|AI649009|GLD-2|Gld2	PAP associated domain containing 4	protein-coding	1.97862796574961	1.03267381821384	1.68084656925662	1.63259606767305	1.66528846843985	1.61623320300076	1.01964108302285	1.64112540307747	-0.394425212081518	0.744425842551904	0.998431161219273
Merged-chr7-109631373-4	chr7	109631288	109631488	+	862.9833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14241.0	NM_029811	76954.0	Mm.252009	NM_029811	ENSMUSG00000031024	St5	2010004M01Rik|2610305K15Rik	suppression of tumorigenicity 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-84793069-2	chr17	84792969	84793169	+	569.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-2283.0	NM_028233	72416.0	Mm.217027	NM_028233	ENSMUSG00000024120	Lrpprc	3110001K13Rik|C76645|Gp130|Lrp130|Lsfc	leucine-rich PPR-motif containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129051412-4	chr4	129051316	129051516	+	948.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6855.0	NM_029219	75234.0	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-29125194-1	chr7	29125094	29125294	+	560.5	f0_c57.idr	promoter-TSS (NM_009109)	promoter-TSS (NM_009109)	-43.0	NM_009109	20190.0	Mm.439745	NM_009109	ENSMUSG00000030592	Ryr1	AI528790|RYR-1|Ryr|skrr	ryanodine receptor 1, skeletal muscle	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-114894667-4	chr6	114894558	114894758	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356371, intron 2 of 5)	intron (NM_001356371, intron 2 of 5)	27163.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-123044170-4	chr8	123044056	123044256	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045268, exon 1 of 1)	non-coding (NR_045268, exon 1 of 1)	1581.0	NR_045268	100503178.0	Mm.294938	NR_045268	ENSMUSG00000099881	2810013P06Rik	-	RIKEN cDNA 2810013P06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-125248269-2	chr2	125248169	125248369	+	790.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023595, intron 1 of 5)	intron (NM_023595, intron 1 of 5)	754.0	NM_023595	110074.0	Mm.282499	NM_023595	ENSMUSG00000027203	Dut	5031412I06Rik|5133400F09Rik|D2Bwg0749e|Dutp|dUTPase	deoxyuridine triphosphatase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129585242-6	chr4	129585110	129585310	+	893.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-6630.0	NM_182783	230766.0	Mm.20377	NM_182783	ENSMUSG00000050493	Fam167b	SEC	family with sequence similarity 167, member B	protein-coding	3.3421232203727	2.56007809318909	3.73037387673164	3.63122927054141	2.85931649655135	1.65750966749649	3.19818590814411	2.55390138407836	-1.201984591025	0.0917457800342648	0.468411008021749
Merged-chr1-165766058-4	chr1	165765937	165766137	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149310, intron 2 of 4)	intron (NR_149310, intron 2 of 4)	2279.0	NM_011804	433375.0	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64676432-4	chr5	64676328	64676528	+	964.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65729.0	NR_045078	100042198.0	Mm.25191	NR_045078	ENSMUSG00000105402	Gm3716	Gm1683	predicted gene 3716	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-122117514-2	chr2	122117414	122117614	+	810.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145531, intron 1 of 39)	intron (NM_145531, intron 1 of 39)	872.0	NM_145531	214585.0	Mm.222303	NM_145531	ENSMUSG00000033396	Spg11	6030465E24Rik|A330015I11|C530005A01Rik	SPG11, spatacsin vesicle trafficking associated	protein-coding	0.66124294553727	0.523133387098393	1.47996312536212	0.862480799331568	0.490085526076581	0.525670563600005	1.49625309481402	0.868127050035029	-0.0843101531416524	0.958454172066734	0.998431161219273
Merged-chr12-101027894-2	chr12	101027794	101027994	+	651.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_026681, intron 2 of 29)	intron (NM_026681, intron 2 of 29)	997.0	NM_001362342	68339.0	Mm.156217	NM_026681	ENSMUSG00000021182	Ccdc88c	0610010D24Rik|AV000935|AW324073|Daple|mKIAA1509	coiled-coil domain containing 88C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97428270-4	chr11	97428184	97428384	+	979.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21876.0	NM_021493	58996.0	Mm.394118	NM_021493	ENSMUSG00000049807	Arhgap23	A330041B18Rik	Rho GTPase activating protein 23	protein-coding	3.46225560973224	2.78393574356469	4.08738350954766	3.0578059584826	2.92371029444955	2.9420732045636	2.55936066146243	2.97566503324879	-0.9908964383988	0.119625005563774	0.542289981141369
Merged-chr13-98831800-2	chr13	98831700	98831900	+	773.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16351.0	NM_172591	218503.0	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	1.38836428206811	1.93456268578576	1.95799976753157	1.70298981707063	1.51813717254103	0.977495669215495	0.960337434667078	1.32390297905755	-1.96212549962109	0.11056176085401	0.520793640554224
Merged-chr10-43856529-4	chr10	43856437	43856637	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28B|LTR|ERVL	30630.0	NR_131055	71018.0	Mm.410796	NR_131055	ENSMUSG00000111342	4933404K13Rik	-	RIKEN cDNA 4933404K13 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-86627830-2	chr11	86627730	86627930	+	652.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356531, intron 7 of 11)	B2_Mm2|SINE|B2	43445.0	NM_001356531	75909.0	Mm.390398	NM_029478	ENSMUSG00000018171	Vmp1	3110098I04Rik|4930579A11Rik|AI787464|Tango5|Tmem49|mir-21a|ni-2	vacuole membrane protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-45951920-2	chr11	45951820	45952020	+	666.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080969, intron 3 of 5)	intron (NM_001080969, intron 3 of 5)	3268.0	NM_001290737	66628.0	Mm.269083	NM_001080969	ENSMUSG00000011254	Thg1l	-	tRNA-histidine guanylyltransferase 1-like (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-60794429-3	chr9	60794307	60794507	+	973.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028283)	promoter-TSS (NM_028283)	-35.0	NM_001357408	72565.0	Mm.68819	NM_028283	ENSMUSG00000034485	Uaca	2700059D02Rik|nucling	uveal autoantigen with coiled-coil domains and ankyrin repeats	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-5035224-4	chr2	5035143	5035343	+	846.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356487, intron 7 of 13)	intron (NM_001356487, intron 7 of 13)	-22452.0	NM_027290	70024.0	Mm.23828	NM_027290	ENSMUSG00000026669	Mcm10	2410041F14Rik|AU018508|C330019M07Rik|C79164	minichromosome maintenance 10 replication initiation factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-4257283-1	chr8	4257183	4257383	+	808.0	f1_c57bl6.idr	TTS (NM_183315)	TTS (NM_183315)	1991.0	NM_183315	330695.0	Mm.34210	NM_183315	ENSMUSG00000048644	Ctxn1	BC028881|Ctxn	cortexin 1	protein-coding	0.501439284756107	0.770661469712754	0.11023155060644	0.95410730782928	0.097129079154309	0.118766913981283	0.111772776729432	0.105769353901415	-4.21107459601552	0.041503633565023	1
Merged-chr7-89441320-3	chr7	89441213	89441413	+	911.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15007.0	NR_102276	101521.0	Mm.26902	NR_102276	ENSMUSG00000109311	AI314278	-	expressed sequence AI314278	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-90451591-2	chr3	90451491	90451691	+	588.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008727, intron 20 of 21)	B3A|SINE|B2	14275.0	NM_008727	18160.0	Mm.4627	NM_008727	ENSMUSG00000027931	Npr1	AI893888|GC-A|NPR-A|NPRA|Pndr	natriuretic peptide receptor 1	protein-coding	1.75552680417371	2.11901840365134	2.8120754175915	1.6823832155889	1.76952621148643	2.13479801769841	2.6044592248731	1.69040688007761	-0.189745757185488	0.840277170443211	0.998431161219273
Merged-chr14-87215303-4	chr14	87215219	87215419	+	883.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74095.0	NM_019670	56419.0	Mm.440585	NM_019670	ENSMUSG00000022021	Diaph3	4930417P13Rik|Dia2|Diap3|Drf3|p134MDia2	diaphanous related formin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-11456485-4	chr16	11456371	11456571	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028964, intron 13 of 20)	intron (NM_028964, intron 13 of 20)	50823.0	NM_001290148	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34289337-1	chr17	34289237	34289437	+	562.0	f1_balb.idr	Intergenic	Intergenic	-1566.0	NM_010378	14960.0	Mm.235338	NM_010378	ENSMUSG00000036594	H2-Aa	Aalpha|H-2Aa|H2Aa|I-Aalpha|IAalpha|Ia-1|Ia1	histocompatibility 2, class II antigen A, alpha	protein-coding	1.72496308732425	1.03057020153645	0.996693884738533	0.752808956807871	2.13411822810998	1.56014063804035	1.00425122765322	0.755178795239245	0.995887322409632	0.472159668392368	0.926125823511231
Merged-chr6-87002901-4	chr6	87002770	87002970	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177762, exon 20 of 20)	3' UTR (NM_177762, exon 20 of 20)	-6966.0	NM_001170591	56748.0	Mm.23809	NM_020045	ENSMUSG00000029993	Nfu1	0610006G17Rik|CGI-33|Hirip5	NFU1 iron-sulfur cluster scaffold	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123573005-4	chr5	123572864	123573064	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029929)	promoter-TSS (NM_029929)	51.0	NM_001359513	77573.0	Mm.41372	NM_029929	ENSMUSG00000029434	Vps33a	3830421M04Rik|AI503300|AW048546|AW554476|bf	VPS33A CORVET/HOPS core subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-72295875-4	chr8	72295768	72295968	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23194.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-48593838-4	chr6	48593741	48593941	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001079901)	promoter-TSS (NM_001079901)	-42.0	NM_001079905	58887.0	Mm.219183	NM_175099	ENSMUSG00000052751	Repin1	AI425994|Ap4|E430037F08Rik|Zfp-464|Zfp464	replication initiator 1	protein-coding	6.53189070325378	6.16761974828871	5.93601360993537	5.48168988716052	6.26255362754634	6.69293699015265	6.37051639887512	5.66149191963952	0.223606438303775	0.415977956302045	0.896676881011847
Merged-chr10-121603705-3	chr10	121603614	121603814	+	872.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359618, intron 17 of 24)	intron (NM_001359618, intron 17 of 24)	-16920.0	NM_019786	56480.0	Mm.34580	NM_019786	ENSMUSG00000020115	Tbk1	1200008B05Rik|AI462036|AW048562	TANK-binding kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-93941068-3	chr11	93940960	93941160	+	867.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134012, intron 15 of 15)	intron (NM_134012, intron 15 of 15)	14723.0	NM_001077529	18103.0	Mm.1260	NM_008705	ENSMUSG00000020857	Nme2	NM23-H2|NM23B|nm23-M2	NME/NM23 nucleoside diphosphate kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-10899051-2	chr16	10898951	10899151	+	595.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	15746.0	NR_131135	545180.0	Mm.373756	NR_131135	ENSMUSG00000095369	Gm21859	-	predicted gene, 21859	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132959668-4	chr4	132959551	132959751	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14444.0	NM_010208	14191.0	Mm.271665	NM_010208	ENSMUSG00000028874	Fgr	-	FGR proto-oncogene, Src family tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-146247863-4	chr5	146247736	146247936	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153599, intron 1 of 12)	L1MB8|LINE|L1	16586.0	NM_153599	264064.0	Mm.260576	NM_153599	ENSMUSG00000029635	Cdk8	-	cyclin-dependent kinase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-73058190-2	chr15	73058090	73058290	+	834.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_180662, exon 2 of 22)	exon (NM_180662, exon 2 of 22)	-2378.0	NM_029640	76510.0	Mm.158902	NM_029640	ENSMUSG00000047921	Trappc9	1810044A24Rik|2900005P22Rik|4632408O18Rik|Ibp|Nibp|TRS130|mKIAA1882	trafficking protein particle complex 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-41517990-4	chr10	41517884	41518084	+	897.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Charlie7|DNA|hAT-Charlie	-1516.0	NM_016898	53599.0	Mm.269815	NM_016898	ENSMUSG00000019818	Cd164	A115|A24|AA589639|AW540279|MGC-24|MSSP	CD164 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-45925565-4	chr1	45925471	45925671	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016917)	promoter-TSS (NM_016917)	23.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-35813846-4	chr1	35813758	35813958	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-254542.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-111049274-4	chr9	111049157	111049357	+	947.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7987.0	NM_001302377	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-57338257-1	chr16	57338157	57338357	+	692.0	f0_balb.idr	intron (NM_025599, intron 1 of 9)	intron (NM_025599, intron 1 of 9)	-15020.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-119173398-2	chr4	119173298	119173498	+	948.1875	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_183140, exon 1 of 2)	5' UTR (NM_183140, exon 1 of 2)	458.0	NM_001145935	195522.0	Mm.169620	NM_183140	ENSMUSG00000045268	Zfp691	6430544H17Rik|Znf691	zinc finger protein 691	protein-coding	1.59982752769254	0.822307543098106	1.65290998078934	1.00994571465746	0.969613394017399	2.22251969765548	0.808341892189849	1.35298345027388	0.500491186996527	0.708780518698161	0.998431161219273
Merged-chr7-143549185-4	chr7	143549070	143549270	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008672)	promoter-TSS (NM_008672)	-50.0	NM_008672	17955.0	Mm.294625	NM_008672	ENSMUSG00000059119	Nap1l4	2810410H14Rik|AI316776|D7Wsu30e|Nap2	nucleosome assembly protein 1-like 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-15383124-2	chr17	15383024	15383224	+	852.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7301.0	NM_007865	13388.0	Mm.4875	NM_007865	ENSMUSG00000014773	Dll1	Delta1	delta like canonical Notch ligand 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10944138-4	chr19	10944052	10944252	+	917.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023731, intron 2 of 3)	MIR|SINE|MIR	5114.0	NM_023731	108673.0	Mm.294908	NM_023731	ENSMUSG00000024732	Ccdc86	4933411H20Rik|6720480F16Rik|D19Ertd678e	coiled-coil domain containing 86	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-26762703-4	chr10	26762599	26762799	+	972.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9813.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-55821106-4	chr16	55820990	55821190	+	997.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159395, intron 2 of 12)	intron (NM_001159395, intron 2 of 12)	1048.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-81784333-2	chr13	81784233	81784433	+	569.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007684, intron 1 of 4)	intron (NM_007684, intron 1 of 4)	1086.0	NM_007684	12626.0	Mm.12481	NM_007684	ENSMUSG00000021537	Cetn3	MmCEN3	centrin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-76179021-3	chr5	76178832	76179032	+	759.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4948.0	NM_011626	21982.0	Mm.790	NM_011626	ENSMUSG00000029234	Tmem165	AV026557|Tpardl|Tparl|pFT27	transmembrane protein 165	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-64371129-2	chr13	64371029	64371229	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009984)	promoter-TSS (NM_009984)	-609.0	NM_009984	13039.0	Mm.930	NM_009984	ENSMUSG00000021477	Ctsl	1190035F06Rik|CatL|Ctsl1|MEP|fs|nkt	cathepsin L	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-78138069-2	chr10	78137969	78138169	+	654.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31699.0	NM_138601	28295.0	Mm.268691	NM_138601	ENSMUSG00000053329	D10Jhu81e	C21orf33|ES1	DNA segment, Chr 10, Johns Hopkins University 81 expressed	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-45197024-3	chr16	45196924	45197124	+	802.722229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27313.0	NM_001037719	208154.0	Mm.38199	NM_177584	ENSMUSG00000052013	Btla	A630002H24	B and T lymphocyte associated	protein-coding	-0.0243336557851901	-0.0129676269905973	0.474367577543205	-0.0196136103840108	0.30677082029702	-0.0121122225325337	0.483680011440421	-0.0191127477645739	0.705099670660509	0.759940908012582	1
Merged-chr14-79479716-2	chr14	79479616	79479816	+	998.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_018765, intron 2 of 9)	B1_Mm|SINE|Alu	-1478.0	NM_007920	13709.0	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-12242375-2	chr5	12242275	12242475	+	704.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-140791.0	NM_028882	108151.0	Mm.89313	NM_028882	ENSMUSG00000040254	Sema3d	4631426B19Rik	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-120327289-4	chr14	120327183	120327383	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360376, intron 2 of 8)	intron (NM_001360376, intron 2 of 8)	20831.0	NM_001360376	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-70991994-3	chr17	70991835	70992035	+	876.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-1419.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	2.13621520554529	2.82819409841288	1.49668680832932	1.45504926918427	2.86256440061605	1.55954583706974	1.50828090755433	3.01039188785468	0.677674279477288	0.49871406077935	0.93727620633312
Merged-chr2-167714411-2	chr2	167714311	167714511	+	963.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23234.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96727597-4	chr3	96727507	96727707	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028925)	promoter-TSS (NM_028925)	-4.0	NM_026406	67845.0	Mm.386792	NM_026406	ENSMUSG00000028098	Rnf115	2610028E05Rik|AU042696|Zfp364	ring finger protein 115	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-69252952-4	chr10	69252852	69253052	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252637, intron 4 of 10)	intron (NM_001252637, intron 4 of 10)	39758.0	NM_001252638	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59016594-7	chr15	59016479	59016679	+	975.0326539999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144800, intron 3 of 14)	T-rich|Low_complexity|Low_complexity	65447.0	NM_001146180	211401.0	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-68195215-4	chr18	68195098	68195298	+	936.9874880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172631, intron 3 of 5)	intron (NM_172631, intron 3 of 5)	-32748.0	NM_001357444	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-20680399-2	chr18	20680299	20680499	+	713.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13B|LTR|ERVK	-15139.0	NR_155534	102633478.0		NR_155534	ENSMUSG00000085595	Gm16090	-	predicted gene 16090	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119728373-2	chr11	119728273	119728473	+	934.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_028898, intron 4 of 33)	RLTR11D|LTR|ERVK	105992.0	NR_045313	319454.0	Mm.442144	NR_045312	ENSMUSG00000085081	Rptoros	A430071A18Rik	regulatory associated protein of MTOR, complex 1, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-6585171-2	chr2	6585071	6585271	+	780.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110232, intron 11 of 15)	intron (NM_001110232, intron 11 of 15)	136491.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-26091052-2	chr2	26090952	26091152	+	771.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026495, intron 1 of 5)	intron (NM_026495, intron 1 of 5)	1344.0	NM_001037098	67991.0	Mm.131074	NM_026495	ENSMUSG00000026932	Nacc2	0610020I02Rik|AI448087|Btbd14a|C030048H19Rik	nucleus accumbens associated 2, BEN and BTB (POZ) domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5506769-2	chr17	5506669	5506869	+	551.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	14169.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-105863253-3	chr1	105863215	105863415	+	967.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	82592.0	NM_009399	21934.0	Mm.6251	NM_009399	ENSMUSG00000026321	Tnfrsf11a	Ly109|ODFR|OFE|Rank|TRANCE-R|mRANK	tumor necrosis factor receptor superfamily, member 11a, NFKB activator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-127332416-2	chr2	127332316	127332516	+	643.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3743.0	NM_010090	13537.0	Mm.4729	NM_010090	ENSMUSG00000027368	Dusp2	PAC1	dual specificity phosphatase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25783875-2	chr7	25783775	25783975	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009465, intron 4 of 19)	intron (NM_009465, intron 4 of 19)	4858.0	NM_001190974	26362.0	Mm.4128	NM_009465	ENSMUSG00000002602	Axl	AI323647|Ark|Tyro7|Ufo	AXL receptor tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-25228851-1	chr12	25228751	25228951	+	565.0	f1_balb.idr	Intergenic	Intergenic	99677.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	1.50478341461558	1.35737618239314	0.752257920250712	1.26216437853259	0.72348653852259	1.94030044441922	0.755583080771733	1.26960740151988	0.148229392720213	0.918457400998508	0.998431161219273
Merged-chr2-128394618-1	chr2	128394518	128394718	+	876.0	f1_c57bl6.idr	intron (NR_028591, intron 1 of 1)	intron (NR_028591, intron 1 of 1)	34733.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	1.23475696822889	1.68371156713653	0.931537320139256	2.11847078039802	1.49996563521472	1.69739642166042	0.935398813898561	1.45180740372662	-0.520550895907364	0.679430972517724	0.995323723386884
Merged-chr17-79950083-2	chr17	79949983	79950183	+	838.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53960.0	NM_001286647	56298.0	Mm.175403	NM_019717	ENSMUSG00000059811	Atl2	2010110I21Rik|AA407293|AV334690|Aip-2|Arl6ip2	atlastin GTPase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-60224312-2	chr11	60224212	60224412	+	816.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1731.0	NM_001358315	20787.0	Mm.278701	NM_011480	ENSMUSG00000020538	Srebf1	ADD1|SREBP1|bHLHd1	sterol regulatory element binding transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-81008510-2	chr7	81008410	81008610	+	741.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178707, intron 1 of 9)	BGLII_B|LTR|ERVK	14826.0	NM_178707	233410.0	Mm.29525	NM_178707	ENSMUSG00000005621	Zfp592	A730014M16Rik|Znf592	zinc finger protein 592	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-17024980-4	chr7	17024873	17025073	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011155, intron 1 of 12)	intron (NM_011155, intron 1 of 12)	2941.0	NM_011155	19060.0	Mm.3294	NM_011155	ENSMUSG00000003099	Ppp5c	AU020526|PP5	protein phosphatase 5, catalytic subunit	protein-coding	4.5708695298953	4.71371148870206	4.99011302385647	4.67310748776617	4.84588183656701	4.18956987487945	5.16170950408508	4.46750848643164	-0.0269239096562589	0.941182170461904	0.998431161219273
Merged-chr10-98915650-1	chr10	98915550	98915750	+	1000.0	f0_balb.idr	intron (NM_001359507, intron 1 of 21)	CpG	498.0	NM_026482	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-13837187-4	chr10	13837116	13837316	+	876.44165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025446, intron 1 of 5)	intron (NM_025446, intron 1 of 5)	31741.0	NM_025446	66253.0	Mm.45755	NM_025446	ENSMUSG00000019806	Aig1	1500031O19Rik|AV064870|AW413422|CGI-103	androgen-induced 1	protein-coding	3.17485179056069	1.63118898546904	2.62855041355298	2.2270612064247	3.66753554084995	3.97601535974061	2.91277921790487	3.68484076313695	1.77158173341165	0.0109008718987411	0.115742177912474
Merged-chr16-85133668-4	chr16	85133601	85133801	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198825, intron 1 of 15)	intron (NM_001198825, intron 1 of 15)	40006.0	NM_001198825	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46641631-4	chr19	46641513	46641713	+	959.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177813, intron 1 of 3)	intron (NM_001177813, intron 1 of 3)	18212.0	NM_001177813	226178.0	Mm.329895	NM_146099	ENSMUSG00000047731	Wbp1l	D19Wsu162e|Opal1	WW domain binding protein 1 like	protein-coding	2.91951486692428	2.39977736973137	3.60597198670579	2.24371995455854	3.45912192606489	1.79567906515327	2.61363371975273	1.67837991413578	-0.529679886413576	0.533548661846895	0.952228804765824
Merged-chr4-136169560-2	chr4	136169460	136169660	+	716.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-2714.0	NM_177733	242705.0	Mm.307932	NM_177733	ENSMUSG00000018983	E2f2	E2F-2	E2F transcription factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21079724-2	chr9	21079624	21079824	+	634.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_027911, exon 8 of 13)	exon (NM_027911, exon 8 of 13)	-4136.0	NR_106050	102465656.0		NR_106050	ENSMUSG00000098907	Mir7082	Gm27933|mmu-mir-7082	microRNA 7082	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-49157628-3	chr11	49157527	49157727	+	787.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2389.0	NM_146276	258273.0	Mm.377407	NM_146276	ENSMUSG00000048378	Olfr1394	MOR280-1	olfactory receptor 1394	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71143455-4	chr17	71143315	71143515	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-40117.0	NM_001357791	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	1.9643092757944	2.55903662746293	2.47312596436631	1.76189896393286	1.97987275467007	2.57789461513121	2.49241184118411	1.76998275200226	0.039127717008786	0.964649813404011	0.998431161219273
Merged-chr10-51489827-2	chr10	51489727	51489927	+	677.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1071.0	NM_001291894	14728.0	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122550370-4	chr8	122550276	122550476	+	964.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037298, intron 1 of 50)	intron (NM_001037298, intron 1 of 50)	953.0	NM_001037298	234839.0	Mm.37324	NM_001037298	ENSMUSG00000014444	Piezo1	9630020g22|Fam38a|mKIAA0233	piezo-type mechanosensitive ion channel component 1	protein-coding	1.2549066174871	1.45751983855018	0.620615759874279	0.610992663578491	1.36051123995852	1.4716459201492	0.623343190520259	0.612683223823454	0.154975362211384	0.924782287275771	0.998431161219273
Merged-chr3-27184848-3	chr3	27184777	27184977	+	859.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 1 of 4)	intron (NM_178772, intron 1 of 4)	1873.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44748450-4	chr7	44748354	44748554	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133945)	promoter-TSS (NM_133945)	-63.0	NM_001289839	243963.0	Mm.382935	NM_178734	ENSMUSG00000048012	Zfp473	D030014N22Rik|Znf473|zfp-100	zinc finger protein 473	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-75170623-4	chr10	75170514	75170714	+	963.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081412, intron 16 of 22)	intron (NM_001081412, intron 16 of 22)	-41459.0	NM_153406	74392.0	Mm.27716	NM_153406	ENSMUSG00000033444	Specc1l	4930470P14Rik|4932439K10Rik|9530057A13Rik|AI317249|Cytsa|mKIAA0376	sperm antigen with calponin homology and coiled-coil domains 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-59431133-2	chr10	59431033	59431233	+	612.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010959, intron 4 of 8)	intron (NM_010959, intron 4 of 8)	10646.0	NM_010959	18302.0	Mm.123013	NM_010959	ENSMUSG00000009654	Oit3	EF-9|LZP	oncoprotein induced transcript 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-149698571-5	chr4	149698489	149698689	+	979.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001164050, exon 1 of 24)	5' UTR (NM_001164050, exon 1 of 24)	119.0	NM_001164050	18707.0	Mm.229108	NM_008840	ENSMUSG00000039936	Pik3cd	2410099E07Rik|2610208K16Rik|AW545373|p110delta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding	4.38118415834998	4.8971117668939	3.46635046647894	3.01132389648443	4.20135749698778	4.92858638326738	4.07799322307736	4.30193047031213	0.363937971514704	0.469986908137573	0.925671894812036
Merged-chr2-124931323-1	chr2	124931223	124931423	+	544.0	f1_balb.idr	Intergenic	Intergenic	-136804.0	NM_175034	317750.0	Mm.330538	NM_175034	ENSMUSG00000035183	Slc24a5	F630045L20Rik|JSX|NCKX5|NCX5|Oca6	solute carrier family 24, member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-119933444-4	chr3	119933336	119933536	+	986.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-150048.0	NM_019550	56195.0	Mm.29966	NM_019550	ENSMUSG00000028134	Ptbp2	Ptb2|brPTB|nPTB	polypyrimidine tract binding protein 2	protein-coding	2.14295460467445	1.19065121883905	2.33162328656742	1.84661122042296	2.38211922065649	1.19600378253201	1.77216131631035	1.85616948929859	-0.187395580140764	0.864716794288455	0.998431161219273
Merged-chr7-67243019-3	chr7	67242927	67243127	+	876.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291195, intron 8 of 10)	intron (NM_001291195, intron 8 of 10)	20411.0	NM_001191051	75099.0	Mm.121691	NM_175215	ENSMUSG00000043831	Lysmd4	4930506D23Rik	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24737671-4	chr17	24737570	24737770	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013759, intron 1 of 4)	intron (NM_013759, intron 1 of 4)	1077.0	NM_001346668	27361.0	Mm.28212	NM_013759	ENSMUSG00000075705	Msrb1	D17Wsu82e|SELX|SelR|Sepr|Sepx1	methionine sulfoxide reductase B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118458167-2	chr11	118458067	118458267	+	988.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-3172.0	NR_045902	100126224.0	Mm.441989	NR_045902	ENSMUSG00000086514	Gm11747	-	predicted gene 11747	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-10874038-4	chr4	10873906	10874106	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026005)	promoter-TSS (NM_026005)	-492.0	NM_026005	67157.0	Mm.440552	NM_026005	ENSMUSG00000059482	2610301B20Rik	AI428449	RIKEN cDNA 2610301B20 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-57874337-4	chr9	57874236	57874436	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36650.0	NM_027086	69459.0	Mm.41735	NM_027086	ENSMUSG00000055720	Ubl7	2300004C15Rik	ubiquitin-like 7 (bone marrow stromal cell-derived)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-78818627-2	chr8	78818527	78818727	+	819.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030145, intron 1 of 3)	intron (NM_030145, intron 1 of 3)	2525.0	NM_001191004	78651.0	Mm.28694	NM_030145	ENSMUSG00000031683	Lsm6	1500031N17Rik|2410088K19Rik|AI747288	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-5163609-2	chr18	5163509	5163709	+	694.666626	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_153824, exon 3 of 3)	non-coding (NR_153824, exon 3 of 3)	2122.0	NR_153824	102637682.0	Mm.451914	NR_153824		Gm26682	Gm38715	predicted gene, 26682	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80856679-2	chr10	80856579	80856779	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175195, intron 1 of 14)	intron (NM_175195, intron 1 of 14)	1404.0	NM_175195	73218.0	Mm.3285	NM_175195	ENSMUSG00000035206	Sppl2b	3110056O03Rik|AW550292|PSL1	signal peptide peptidase like 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71752475-4	chr8	71752362	71752562	+	863.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26781.0	NM_028715	74015.0	Mm.22025	NM_028715	ENSMUSG00000070000	Fcho1	3322402E17Rik|N28152	FCH domain only 1	protein-coding	4.1241386301101	1.75688754982238	3.13279774914735	3.14227222732894	3.65420175952084	2.88136420798454	3.68924898987244	4.34261316816243	0.657308096535993	0.335745738279342	0.836089117450301
Merged-chr17-29489722-4	chr17	29489624	29489824	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1321.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-129369919-4	chr6	129369832	129370032	+	941.158325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	15571.0	NM_027709	71183.0	Mm.79402	NM_027709	ENSMUSG00000030158	Clec12b	4933425B16Rik	C-type lectin domain family 12, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135898571-4	chr4	135898466	135898666	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009924, intron 1 of 1)	MIRb|SINE|MIR	3377.0	NM_009924	12802.0	Mm.297251	NM_009924	ENSMUSG00000062585	Cnr2	CB-2|CB2|CB2-R	cannabinoid receptor 2 (macrophage)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-96874912-3	chr11	96874795	96874995	+	857.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24502.0	NR_029562	387170.0		NR_029562	ENSMUSG00000065515	Mir152	Mirn152|mir-152|mmu-mir-152	microRNA 152	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-105568272-4	chr5	105568187	105568387	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133897, intron 2 of 3)	intron (NM_133897, intron 2 of 3)	48816.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-88243057-2	chr1	88242957	88243157	+	837.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001281466, intron 21 of 41)	intron (NM_001281466, intron 21 of 41)	16037.0	NM_001281466	100040766.0	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	Heatr7b1	maestro heat-like repeat family member 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-43765437-4	chr13	43765335	43765535	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19677.0	NM_009856	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	5.47004543419718	6.14889422984687	5.3312349090934	5.94602183034608	5.81217716607463	6.46673770948199	6.10100171467992	6.24853531850132	0.456121771124917	0.0816134562605009	0.436669406827241
Merged-chr13-116033058-2	chr13	116032958	116033158	+	622.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3_Mus|LINE|L1	276630.0	NM_021459	16392.0	Mm.42242	NM_021459	ENSMUSG00000042258	Isl1	-	ISL1 transcription factor, LIM/homeodomain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-102860318-3	chr13	102860236	102860436	+	844.305542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175171, intron 4 of 28)	intron (NM_175171, intron 4 of 28)	100081.0	NR_130171	76624.0	Mm.426384	NR_130171	ENSMUSG00000091906	1700099I09Rik	-	RIKEN cDNA 1700099I09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-136936598-3	chr2	136936497	136936697	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355671, intron 2 of 6)	intron (NM_001355671, intron 2 of 6)	37246.0	NM_001038641	74243.0	Mm.330612	NM_028201	ENSMUSG00000027281	Slx4ip	2210009G21Rik|2410004I22Rik|C85661|Slxip	SLX4 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-64050124-2	chr9	64050024	64050224	+	813.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_040713, intron 1 of 2)	intron (NR_040713, intron 1 of 2)	295.0	NR_040713	68697.0	Mm.491042	NR_040713	ENSMUSG00000097036	1110036E04Rik	-	RIKEN cDNA 1110036E04 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-74858295-2	chr11	74858195	74858395	+	734.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_197943, intron 14 of 22)	intron (NM_197943, intron 14 of 22)	9899.0	NR_105891	102465558.0		NR_105891	ENSMUSG00000098317	Mir6926	Gm27949|mmu-mir-6926	microRNA 6926	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-34018085-2	chr13	34017985	34018185	+	844.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359997, intron 6 of 10)	L1MB3|LINE|L1	15211.0	NM_009068	19766.0	Mm.374799	NM_009068	ENSMUSG00000021408	Ripk1	D330015H01Rik|RIP|RIP-1|Rinp|Rip1	receptor (TNFRSF)-interacting serine-threonine kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-95144822-2	chr10	95144722	95144922	+	608.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_131146, intron 2 of 3)	intron (NR_131146, intron 2 of 3)	1003.0	NR_131146	628062.0		NR_131146	ENSMUSG00000112481	Gm29684	-	predicted gene, 29684	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191193807-4	chr1	191193661	191193861	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10428.0	NM_007498	11910.0	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101871534-4	chr7	101871459	101871659	+	980.81665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008034)	promoter-TSS (NM_008034)	-771.0	NM_001252552	14275.0	Mm.2135	NM_008034	ENSMUSG00000001827	Folr1	FBP1|Folbp-1|Folbp1	folate receptor 1 (adult)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-30638321-4	chr5	30638243	30638443	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-9593.0	NR_049199	100885838.0		NR_049199	ENSMUSG00000093710	Mir5625	Gm23930|mmu-mir-5625	microRNA 5625	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-39583389-4	chr1	39583298	39583498	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb-int|LTR|ERVL-MaLR	-6051.0	NM_001033135	67702.0	Mm.28614	NM_001033135	ENSMUSG00000048234	Rnf149	1600023E10Rik|AV037261|C76763|Gm15832|Greul4	ring finger protein 149	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5088423-4	chr19	5088316	5088516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026553)	promoter-TSS (NM_026553)	-122.0	NM_026553	68090.0	Mm.44202	NM_026553	ENSMUSG00000024875	Yif1a	5330422J23Rik|54TM|Yif1|Yif1p	Yip1 interacting factor homolog A (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-66998972-4	chr10	66998861	66999061	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6114.0	NR_110511	102634101.0	Mm.445258	NR_110511	ENSMUSG00000112925	Gm31763	-	predicted gene, 31763	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-106882923-4	chr1	106882838	106883038	+	814.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001360853, exon 8 of 8)	3' UTR (NM_001360853, exon 8 of 8)	21763.0	NM_009257	20724.0	Mm.268618	NM_009257	ENSMUSG00000067006	Serpinb5	1110036M19Rik|AI462524|AI646751|Maspin|PI-5|Spi7|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-75558652-6	chr9	75558594	75558794	+	965.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357828, intron 1 of 10)	intron (NM_001357828, intron 1 of 10)	963.0	NM_016963	50875.0	Mm.38445	NM_016963	ENSMUSG00000058587	Tmod3	U-Tmod|UTMOD	tropomodulin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-32539390-2	chr11	32539290	32539490	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 1 of 18)	RMER5|LTR|ERV1	6124.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	0.47710368083939	0.0106053760276663	0.00482848966319366	0.000362612692890979	0.386792564816319	0.0119058747804343	0.796120110825933	0.00114337055875519	1.43744606439455	0.519029677741096	1
Merged-chr7-63940483-3	chr7	63940373	63940573	+	820.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1558.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	1.2183130693384	1.29537563780718	0.989676709439075	0.640650338138949	1.23064939651914	1.03539419702592	0.650224037776775	0.817450233898782	-0.508607720902498	0.732075383866343	0.998431161219273
Merged-chr13-23586857-3	chr13	23586772	23586972	+	819.68335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290530)	promoter-TSS (NM_001290530)	-902.0	NM_001290530	319179.0	Mm.440391	NM_178194	ENSMUSG00000047246	Hist1h2be	-	histone cluster 1, H2be	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36312005-2	chr1	36311905	36312105	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290726, intron 2 of 7)	intron (NM_001290726, intron 2 of 7)	4272.0	NM_001172205	214855.0	Mm.34316	NM_145996	ENSMUSG00000037447	Arid5a	D430024K22Rik|Mrf1	AT rich interactive domain 5A (MRF1-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-136072042-1	chr4	136071942	136072142	+	1000.0	f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-18671.0	NM_025919	67025.0	Mm.276856	NM_025919	ENSMUSG00000059291	Rpl11	2010203J19Rik	ribosomal protein L11	protein-coding	1.04726404601997	0.477912484712834	0.469201789093708	0.4624382931251	1.05955094449075	1.13469255497814	0.471128269218002	1.03462747264599	1.62139262755703	0.360173087024716	1
Merged-chr13-43750514-3	chr13	43750411	43750611	+	579.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	33720.0	NR_046022	622552.0	Mm.375036	NR_046022	ENSMUSG00000110016	Gm20751	-	predicted gene, 20751	ncRNA	-0.980095432452841	-0.964542510204946	-0.975046101262169	-0.976950852160411	-0.840846998762357	-0.962085528045909	-0.656429021384766	-0.682851970202685	2.76569359777558	0.339809773714815	1
Merged-chr7-16823064-2	chr7	16822964	16823164	+	927.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_133789, exon 3 of 18)	exon (NM_133789, exon 3 of 18)	-6332.0	NM_173430	243853.0	Mm.39703	NM_173430	ENSMUSG00000048920	Fkrp	A830029B19Rik|AI842067|AI847300|LGMD1I|MDC1C	fukutin related protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-87010075-5	chr6	87009936	87010136	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020045, intron 1 of 7)	CpG	200.0	NM_020045	56748.0	Mm.23809	NM_020045	ENSMUSG00000029993	Nfu1	0610006G17Rik|CGI-33|Hirip5	NFU1 iron-sulfur cluster scaffold	protein-coding	4.10951356232868	4.69575683069049	4.38947933939747	3.80622280656889	5.23071431785179	5.00092135908889	5.11150294970028	4.54587350410132	0.89167831138549	0.0175793133869802	0.162911896511577
Merged-chr10-24131650-4	chr10	24131537	24131737	+	941.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17652.0	NM_001358563	53331.0	Mm.248042	NM_016797	ENSMUSG00000019998	Stx7	AI315064|AI317144|AW107239|Syn7	syntaxin 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-78805216-4	chr18	78805105	78805305	+	863.729126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053099, intron 4 of 5)	T-rich|Low_complexity|Low_complexity	-208255.0	NM_207651	27411.0	Mm.44158	NM_030683	ENSMUSG00000024552	Slc14a2	UT-A1|UT-A3	solute carrier family 14 (urea transporter), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-6571179-2	chr13	6571079	6571279	+	663.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360106, intron 20 of 26)	MTC|LTR|ERVL-MaLR	23022.0	NM_001360106	69617.0	Mm.41933	NM_145131	ENSMUSG00000021193	Pitrm1	2310012C15Rik|AA410010|MP-1|MP1|Ntup1|PreP|mKIAA1104	pitrilysin metallepetidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-34914255-4	chr2	34914165	34914365	+	933.724976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028716)	promoter-TSS (NM_028716)	-289.0	NM_028716	74016.0	Mm.65691	NM_028716	ENSMUSG00000026873	Phf19	3110009G19Rik|3321402G02Rik	PHD finger protein 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-51312162-4	chr13	51312064	51312264	+	919.2333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-96454.0	NM_010101	13610.0	Mm.136736	NM_010101	ENSMUSG00000067586	S1pr3	AI132464|Edg3|Lpb3|S1p3	sphingosine-1-phosphate receptor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-25220377-1	chr12	25220277	25220477	+	902.0	f1_balb.idr	Intergenic	Intergenic	91203.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	0.493951738625451	0.226930814590627	0.219362900488685	0.542502830609446	0.205122634572871	0.764222370116904	1.13552753023474	0.214515420489886	1.63433350890579	0.396168612493017	1
Merged-chr16-13440649-3	chr16	13440547	13440747	+	723.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8876.0	NR_030549	100124432.0		NR_030549	ENSMUSG00000076972	Mir193b	Mir193|Mirn193b|mir-193b	microRNA 193b	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102129195-2	chr12	102129095	102129295	+	639.5	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001362345, exon 1 of 17)	5' UTR (NM_001362345, exon 1 of 17)	468.0	NM_172152	238384.0	Mm.312448	NM_172152	ENSMUSG00000041771	Slc24a4	A930002M03Rik|AW492432|NCKX4	solute carrier family 24 (sodium/potassium/calcium exchanger), member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-27109228-2	chr3	27109128	27109328	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007900, intron 22 of 24)	intron (NM_007900, intron 22 of 24)	44626.0	NM_007900	13605.0	Mm.261453	NM_007900	ENSMUSG00000027699	Ect2	AI528536	ect2 oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-84121541-4	chr17	84121432	84121632	+	931.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42872.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-135443556-2	chr3	135443456	135443656	+	635.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356598, intron 2 of 8)	intron (NM_001356598, intron 2 of 8)	4430.0	NM_001356597	66105.0	Mm.49884	NM_025356	ENSMUSG00000078578	Ube2d3	1100001F19Rik|9430029A22Rik|AA414951	ubiquitin-conjugating enzyme E2D 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5190772-2	chr17	5190672	5190872	+	788.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 4 of 19)	intron (NM_001085355, intron 4 of 19)	195698.0	NM_001085355	239985.0	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75767713-4	chr11	75767594	75767794	+	853.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_007873)	TTS (NM_007873)	-28115.0	NR_136933	102641247.0	Mm.411386	NR_136932		Gm12339	-	predicted gene 12339	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-46144251-4	chr17	46144158	46144358	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029338)	promoter-TSS (NM_029338)	-60.0	NM_029338	75564.0	Mm.17993	NM_029338	ENSMUSG00000023966	Rsph9	1700027N10Rik	radial spoke head 9 homolog (Chlamydomonas)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153144960-2	chr2	153144860	153145060	+	932.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001172117, intron 11 of 12)	intron (NM_001172117, intron 11 of 12)	-16341.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-103945551-2	chr2	103945451	103945651	+	832.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12444.0	NM_001142337	16909.0	Mm.29266	NM_008505	ENSMUSG00000032698	Lmo2	Rbtn-2|Rbtn2|Rhom-2|Ttg2	LIM domain only 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123915060-2	chr5	123914960	123915160	+	978.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026603, intron 2 of 7)	intron (NM_026603, intron 2 of 7)	7785.0	NM_026603	68184.0	Mm.28549	NM_026603	ENSMUSG00000023106	Denr	1500003K04Rik	density-regulated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-121546339-2	chr5	121546239	121546439	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010765)	promoter-TSS (NM_010765)	-447.0	NM_010765	17165.0	Mm.272206	NM_010765	ENSMUSG00000029454	Mapkapk5	MK5|PRAK	MAP kinase-activated protein kinase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-85618959-3	chr4	85618895	85619095	+	822.93335	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	413539.0	NM_019535	20404.0	Mm.143603	NM_019535	ENSMUSG00000028488	Sh3gl2	9530001L19Rik|AI120490|AW555077|B930049H17Rik|EEN-B1|SH3PA|Sh3d2a	SH3-domain GRB2-like 2	protein-coding	0.227510770367352	-0.228560832600059	-0.0565642839511434	0.477490780260075	-0.241658665632252	-0.227528045688189	-0.232130710120734	-0.236054920515432	-3.74458992608493	0.111446175857708	1
Merged-chr5-21217010-2	chr5	21216910	21217110	+	615.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153365, intron 5 of 26)	intron (NR_153365, intron 5 of 26)	30743.0	NM_001359877	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-60375745-3	chr10	60375667	60375867	+	775.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252635, intron 37 of 68)	intron (NM_001252635, intron 37 of 68)	-23959.0	NM_001164374	100302688.0	Mm.444135	NM_001164374	ENSMUSG00000090439	Gm17455	-	predicted gene, 17455	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-64266812-4	chr15	64266698	64266898	+	963.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 3 of 28)	intron (NM_001276461, intron 3 of 28)	45875.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-113641845-2	chr8	113641734	113641934	+	859.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001048143, intron 5 of 5)	intron (NM_001048143, intron 5 of 5)	-1379.0	NM_029139	668110.0	Mm.390078	NM_029139	ENSMUSG00000033409	Syce1l	4930481F22Rik|MMRP|PSESS|mmrp2	synaptonemal complex central element protein 1 like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-143329203-4	chr5	143329121	143329321	+	988.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028379)	promoter-TSS (NM_028379)	17.0	NM_001359445	72881.0	Mm.261606	NM_028379	ENSMUSG00000001844	Zdhhc4	1810021D01Rik|2900029I10Rik|DHHC-4	zinc finger, DHHC domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-37619447-3	chr13	37619356	37619556	+	803.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-206582.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99003864-2	chr15	99003764	99003964	+	849.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	17899.0	NR_045991	75951.0	Mm.441657	NR_045991	ENSMUSG00000097587	4930578M01Rik	3010001K12Rik	RIKEN cDNA 4930578M01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-67823848-4	chr5	67823711	67823911	+	984.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038999, intron 1 of 36)	intron (NM_001038999, intron 1 of 36)	23620.0	NM_009727	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-106790118-4	chr3	106790007	106790207	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007651)	promoter-TSS (NM_007651)	42.0	NM_007651	12508.0	Mm.316861	NM_007651	ENSMUSG00000040747	Cd53	AI323659|Ox-44|Tspan25	CD53 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-83723545-1	chr8	83723445	83723645	+	693.0	f0_balb.idr	TTS (NM_197982)	TTS (NM_197982)	439.0	NR_106188	102465897.0		NR_106188	ENSMUSG00000098465	Mir1668	Gm27590|mmu-mir-1668	microRNA 1668	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3373418-2	chr12	3373318	3373518	+	674.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008445, intron 1 of 7)	ID_B1|SINE|B4	8286.0	NM_008445	16570.0	Mm.7688	NM_008445	ENSMUSG00000020668	Kif3c	mKIAA4058	kinesin family member 3C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-59176644-2	chr2	59176544	59176744	+	667.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 1 of 20)	intron (NM_175464, intron 1 of 20)	15794.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-52452865-2	chr3	52452744	52452944	+	586.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-64120.0	NR_153344	102631981.0	Mm.394225	NR_153344		Gm30173	-	predicted gene, 30173	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71096354-2	chr17	71096241	71096441	+	794.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083934, intron 21 of 36)	intron (NM_001083934, intron 21 of 36)	76784.0	NM_001083934	17929.0	Mm.4103	NM_010867	ENSMUSG00000024049	Myom1	D430047A17Rik	myomesin 1	protein-coding	-0.868200281806746	-0.996496491336938	-1.00853288953665	-0.368821712930239	-1.01475329110817	-0.993888153636026	-1.00580811281457	-1.01127002736351	-2.90325356872352	0.34781365862981	1
Merged-chr1-80715706-3	chr1	80715588	80715788	+	896.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175291, intron 1 of 55)	intron (NM_175291, intron 1 of 55)	42865.0	NM_175291	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101144545-2	chr11	101144445	101144645	+	573.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11339.0	NM_134028	103768.0	Mm.142348	NM_134028	ENSMUSG00000045007	Tubg2	AI504772|Tubgl	tubulin, gamma 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-43364607-3	chr15	43364531	43364731	+	688.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-81895.0	NM_008388	16341.0	Mm.289992	NM_008388	ENSMUSG00000022336	Eif3e	48kDa|Eif3s6|Int6|eIF3-p46|eIF3-p48	eukaryotic translation initiation factor 3, subunit E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-108689851-2	chr12	108689751	108689951	+	885.25	f1_balb.idr|f1_c57bl6.idr	TTS (NM_027299)	TTS (NM_027299)	12455.0	NM_001171002	70059.0	Mm.207605	NM_027299	ENSMUSG00000021263	Degs2	2210008A03Rik|AI852933|DES2	delta(4)-desaturase, sphingolipid 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81412382-3	chr10	81412291	81412491	+	587.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_152732)	TTS (NR_152732)	2816.0	NR_152732	102634174.0	Mm.392213	NR_152732	ENSMUSG00000085327	Gm16104	-	predicted gene 16104	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-3077917-2	chr17	3077816	3078016	+	814.25	f0_balb.idr|f1_balb.idr	intron (NR_003519, intron 4 of 7)	intron (NR_003519, intron 4 of 7)	6267.0	NR_003519	328734.0	Mm.335641	NR_003519		Pisd-ps2	D030013I16Rik	phosphatidylserine decarboxylase, pseudogene 2	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-79350119-2	chr15	79350019	79350219	+	777.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001304832, intron 1 of 2)	intron (NM_001304832, intron 1 of 2)	1717.0	NM_001304832	17133.0	Mm.86646	NM_010755	ENSMUSG00000042622	Maff	-	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein F (avian)	protein-coding	-0.795614833823998	-0.786336807896898	-0.789385015939899	-0.791731170198697	-0.417731367456157	-0.784588885553199	-0.788713411686562	-0.258531662084455	3.1330601925306	0.28800364166158	1
Merged-chr19-32180353-4	chr19	32180273	32180473	+	998.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 5 of 9)	intron (NM_144792, intron 5 of 9)	30640.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26886234-4	chr17	26886124	26886324	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-30867.0	NM_053173	16580.0	Mm.491138	NM_016761	ENSMUSG00000024301	Kifc5b	Hset|KNSL2|Kifc5a	kinesin family member C5B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-76528329-1	chr11	76528229	76528429	+	721.0	f1_balb.idr	intron (NM_198894, intron 1 of 22)	intron (NM_198894, intron 1 of 22)	-18910.0	NM_198018	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	-0.956912485955508	-0.746438414464018	-0.950702840226116	-0.304490442460908	-0.956335988812736	-0.937522145058547	-0.949911578686253	-0.952629298111336	-2.99774390970174	0.323689361080636	1
Merged-chr7-84086576-2	chr7	84086476	84086676	+	903.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030728)	promoter-TSS (NM_030728)	-71.0	NM_030728	80982.0	Mm.160389	NM_030728	ENSMUSG00000052353	Cemip	12H19.01.T7|6330404C01Rik|9930013L23Rik|AY007814|Kiaa1199	cell migration inducing protein, hyaluronan binding	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64376681-4	chr5	64376572	64376772	+	988.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA5|LINE|L1	91270.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126781481-2	chr7	126781381	126781581	+	596.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011538)	promoter-TSS (NM_011538)	-2.0	NM_011538	21389.0	Mm.727	NM_011538	ENSMUSG00000030699	Tbx6	rv	T-box 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-78177532-4	chr11	78177423	78177623	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291235)	promoter-TSS (NM_001291235)	-626.0	NM_001291235	68385.0	Mm.390375	NM_026708	ENSMUSG00000019437	Tlcd1	-	TLC domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-99110703-2	chr4	99110603	99110803	+	617.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026082, intron 1 of 47)	intron (NM_026082, intron 1 of 47)	10212.0	NM_001290636	67299.0	Mm.260623	NM_026082	ENSMUSG00000028556	Dock7	3110056M06Rik|Gm430	dedicator of cytokinesis 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72145676-3	chr6	72145608	72145808	+	837.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001035228, intron 4 of 6)	Tigger5b|DNA|TcMar-Tigger	-22511.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-33338191-3	chr4	33338095	33338295	+	789.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305273, intron 7 of 15)	intron (NM_001305273, intron 7 of 15)	27884.0	NM_001305273	24018.0	Mm.240024	NM_011884	ENSMUSG00000028274	Rngtt	AU020997|HCE|MCE1	RNA guanylyltransferase and 5'-phosphatase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-30870368-3	chr14	30870264	30870464	+	926.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028839, intron 4 of 7)	intron (NM_028839, intron 4 of 7)	-8893.0	NM_181390	66175.0	Mm.220895	NM_181390	ENSMUSG00000042485	Mustn1	1110028G01Rik|Mustang	musculoskeletal, embryonic nuclear protein 1	protein-coding	3.27647727893121	3.11065172382716	3.00656537217523	3.37280470680182	3.54948784272779	3.13335041136509	3.03003097267432	3.59593708369584	0.257793345230139	0.652963034697509	0.986583880083516
Merged-chr16-75869497-4	chr16	75869399	75869599	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023380, intron 7 of 7)	intron (NM_023380, intron 7 of 7)	39767.0	NM_023380	67742.0	Mm.131406	NM_023380	ENSMUSG00000022876	Samsn1	4930571B16Rik|930571B16Rik|Hacs1|SLy2	SAM domain, SH3 domain and nuclear localization signals, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-116726302-3	chr6	116726231	116726431	+	755.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER57E1|LTR|ERV1	-9573.0	NM_178768	319776.0	Mm.133120	NM_178768	ENSMUSG00000048108	Tmem72	C230095G01Rik	transmembrane protein 72	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-20594031-2	chr8	20593931	20594131	+	710.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-20896.0	NM_001270553	100861668.0	Mm.491087	NM_001270553	ENSMUSG00000095294	Gm21119	-	predicted gene, 21119	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-11540739-3	chr11	11540646	11540846	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51480.0	NM_028669	73862.0	Mm.159077	NM_028669	ENSMUSG00000020191	Spata48	4930415F15Rik	spermatogenesis associated 48	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-84016269-2	chr6	84016169	84016369	+	708.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077694, intron 1 of 54)	intron (NM_001077694, intron 1 of 54)	-3117.0	NM_001310152	26903.0	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78815439-2	chr15	78815339	78815539	+	728.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12397.0	NM_130859	105844.0	Mm.17629	NM_130859	ENSMUSG00000033170	Card10	AI449026|Bimp1|Carma3	caspase recruitment domain family, member 10	protein-coding	1.61591474877546	1.67489932886399	1.98002194314983	1.70332327462499	1.83392461686709	1.08373796092304	2.09445930892099	1.04759533791093	-0.41809595995031	0.721907883258225	0.998431161219273
Merged-chr5-77289802-3	chr5	77289699	77289899	+	752.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17042.0	NR_039557	100628577.0		NR_039557	ENSMUSG00000093061	Mir5098	mmu-mir-5098|mu-mir-5098	microRNA 5098	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-12679417-2	chr13	12679317	12679517	+	556.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29022.0	NR_003568	664862.0	Mm.415635	NR_003568		Gpr137b-ps	2310041G17Rik	G protein-coupled receptor 137B, pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-110379536-4	chr7	110379437	110379637	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177324, intron 17 of 40)	intron (NM_177324, intron 17 of 40)	157834.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85457676-2	chr12	85457576	85457776	+	649.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16214.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-93399817-4	chr15	93399712	93399912	+	824.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358749, intron 2 of 8)	T-rich|Low_complexity|Low_complexity	1348.0	NM_001285863	223828.0	Mm.74208	NM_146062	ENSMUSG00000036167	Pphln1	CR|HSPC206|HSPC232	periphilin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141456072-4	chr7	141455970	141456170	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025802, intron 1 of 7)	intron (NM_025802, intron 1 of 7)	882.0	NM_001163689	66853.0	Mm.29998	NM_025802	ENSMUSG00000025509	Pnpla2	0610039C21Rik|1110001C14Rik|Atgl|TTS-2.2	patatin-like phospholipase domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-16009852-4	chr19	16009750	16009950	+	741.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045355, intron 2 of 2)	intron (NR_045355, intron 2 of 2)	24775.0	NR_045355	100502653.0	Mm.149980	NR_045355	ENSMUSG00000097557	C130060C02Rik	-	RIKEN cDNA C130060C02 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-54903090-4	chr1	54902973	54903173	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081433, intron 1 of 27)	RMER19B|LTR|ERVK	23314.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25269871-4	chr7	25269761	25269961	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302811, intron 1 of 20)	intron (NM_001302811, intron 1 of 20)	2162.0	NM_001302811	71722.0	Mm.28833	NM_027882	ENSMUSG00000005442	Cic	1200010B10Rik|mKIAA0306	capicua transcriptional repressor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-151718078-2	chr1	151717978	151718178	+	867.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_022018, exon 14 of 14)	exon (NM_022018, exon 14 of 14)	36649.0	NR_151474	102640772.0		NR_151473	ENSMUSG00000100594	2810414N06Rik	-	RIKEN cDNA 2810414N06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34850889-2	chr17	34850789	34850989	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021337)	promoter-TSS (NM_021337)	498.0	NM_001045864	27632.0	Mm.653	NM_138580	ENSMUSG00000024369	Nelfe	D17H6S45|NELF-E|RD|Rdbp	negative elongation factor complex member E, Rdbp	protein-coding	-2.18292257394068	-2.15545247547656	-2.03304972317742	-2.17058342868585	-2.18099422382073	-2.1536522739386	-2.16187909550322	-2.16936197735154	-0.683654500252594	0.846597994014493	1
Merged-chr7-105776755-2	chr7	105776655	105776855	+	553.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162943, intron 1 of 20)	B4A|SINE|B4	10795.0	NM_001162943	233651.0	Mm.334108	NM_001162943	ENSMUSG00000036862	Dchs1	3110041P15Rik|C130033F22Rik|CDH25|FIB1|Gm165|PCDH16	dachsous cadherin related 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-34866114-2	chr18	34866014	34866214	+	955.6666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4907.0	NM_007913	13653.0	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-55853011-4	chr7	55852916	55853116	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011370, intron 1 of 30)	intron (NM_011370, intron 1 of 30)	10945.0	NM_001164661	20430.0	Mm.37249	NM_011370	ENSMUSG00000030447	Cyfip1	E030028J09Rik|P140SRA-1|P140sra1|Shyc|Sra-1|Sra1|l(7)1Rl|l71Rl|l7Rl1|mKIAA0068|pl-1	cytoplasmic FMR1 interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131980382-3	chr1	131980307	131980507	+	864.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177628, intron 4 of 4)	intron (NM_001177628, intron 4 of 4)	9798.0	NM_145977	212980.0	Mm.200307	NM_145977	ENSMUSG00000026435	Slc45a3	2210413P12Rik|AU023994|AU043764|IPCA-6|PRST|Pcanap6	solute carrier family 45, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-71390789-2	chr2	71390689	71390889	+	574.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026115, intron 2 of 10)	intron (NM_026115, intron 2 of 10)	1529.0	NM_026115	107435.0	Mm.272472	NM_026115	ENSMUSG00000027018	Hat1	2410071B14Rik|AA536933|Hat-1|KAT1	histone aminotransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-185352550-1	chr1	185352450	185352650	+	565.0	f1_c57bl6.idr	intron (NM_001347210, intron 8 of 9)	PB1|SINE|Alu	-10494.0	NM_029735	107508.0	Mm.154511	NM_029735	ENSMUSG00000026615	Eprs	2410081F06Rik|3010002K18Rik|C79379|Qprs	glutamyl-prolyl-tRNA synthetase	protein-coding	0.960553759872717	0.479381714529512	0.470540474073766	0.919639485600894	0.453922752863638	0.481366956659885	1.19487568655397	1.23472483443335	0.865883164207274	0.623885267644471	1
Merged-chr3-145750533-4	chr3	145750430	145750630	+	998.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16_Mm|LTR|ERVK	-8162.0	NM_026993	69219.0	Mm.234247	NM_026993	ENSMUSG00000028194	Ddah1	2410006N07Rik|2510015N06Rik|AI987801|AW050362	dimethylarginine dimethylaminohydrolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-90810506-4	chr16	90810395	90810595	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029497)	promoter-TSS (NM_029497)	-82.0	NM_029497	207932.0	Mm.328688	NM_029497	ENSMUSG00000039929	Urb1	4921511H13Rik|5730405K23Rik|AA670781|AI645590|mKIAA0539	URB1 ribosome biogenesis 1 homolog (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-42128190-4	chr9	42128076	42128276	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3879.0	NM_011436	20660.0	Mm.121920	NM_011436	ENSMUSG00000049313	Sorl1	2900010L19Rik|AI596264|AW261561|LR11|SorLA|gp250|mSorLA	sortilin-related receptor, LDLR class A repeats-containing	protein-coding	3.75946863505813	4.01101195660525	3.06486177577483	4.04597822727835	3.13343495422776	3.41831508477528	2.83081588032163	3.29453357147316	-0.913062700353874	0.0982853248148048	0.487631338152555
Merged-chr4-32358783-4	chr4	32358654	32358854	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58681.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-79626066-2	chr11	79625966	79626166	+	642.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175543, intron 3 of 14)	intron (NM_175543, intron 3 of 14)	-2903.0	NR_003283	790912.0	Mm.447313	NR_003283	ENSMUSG00000087434	Rab11fip4os1	Gm11202	RAB11 family interacting protein 4 (class II), opposite strand 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-54115002-3	chr19	54114881	54115081	+	801.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	69799.0	NM_007417	11551.0	Mm.235195	NM_007417	ENSMUSG00000033717	Adra2a	AW122659|Adra-2|Adra-2a|alpha(2A)AR|alpha2-C10|alpha2A|alpha2A-AR	adrenergic receptor, alpha 2a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-4319525-4	chr9	4319414	4319614	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164574, intron 2 of 2)	B1F|SINE|Alu	9698.0	NM_026962	69149.0	Mm.25946	NM_026962	ENSMUSG00000025893	Kbtbd3	2200003A07Rik|Bklhd3	kelch repeat and BTB (POZ) domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-119446770-2	chr6	119446670	119446870	+	594.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009525, intron 2 of 4)	B1_Mur2|SINE|Alu	2616.0	NM_001271757	22419.0	Mm.321818	NM_009525	ENSMUSG00000030170	Wnt5b	AW545702|Wnt-5b	wingless-type MMTV integration site family, member 5B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-58585667-4	chr15	58585544	58585744	+	904.966675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	170176.0	NM_145959	210998.0	Mm.3224	NM_145959	ENSMUSG00000037119	Fam91a1	AV220772|BC033609|D15Ertd621e|SKIN|mKIAA0493	family with sequence similarity 91, member A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30266490-4	chr2	30266393	30266593	+	831.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001281829)	promoter-TSS (NM_001281829)	-228.0	NM_001281829	227696.0	Mm.297949	NM_172267	ENSMUSG00000079484	Phyhd1	-	phytanoyl-CoA dioxygenase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-66634795-2	chr2	66634695	66634895	+	737.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001290675, exon 1 of 27)	5' UTR (NM_001290675, exon 1 of 27)	167.0	NM_001290674	20274.0	Mm.440889	NM_018852	ENSMUSG00000075316	Scn9a	Nav1.7|PN1|mKIAA4197	sodium channel, voltage-gated, type IX, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-37998689-4	chr18	37998607	37998807	+	928.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001205336, exon 1 of 33)	5' UTR (NM_001205336, exon 1 of 33)	262.0	NM_001205336	106952.0	Mm.247642	NM_139206	ENSMUSG00000024451	Arap3	Centd3|Drag1|E030006K04Rik|cnt-d3	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-52478610-2	chr12	52478510	52478710	+	613.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_136881, intron 2 of 2)	intron (NR_136881, intron 2 of 2)	1999.0	NR_136881	102638611.0	Mm.363799	NR_136881	ENSMUSG00000111982	Gm35135	-	predicted gene, 35135	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-135192089-4	chr6	135191967	135192167	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040296, exon 4 of 5)	non-coding (NR_040296, exon 4 of 5)	3587.0	NR_040296	100502888.0	Mm.437844	NR_040296	ENSMUSG00000108239	Gm19434	-	predicted gene, 19434	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-102771170-4	chr7	102771054	102771254	+	863.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3372.0	NM_147092	259096.0	Mm.377839	NM_147092	ENSMUSG00000073966	Olfr561	MOR14-2	olfactory receptor 561	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-40728919-4	chr19	40728811	40729011	+	979.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304721, intron 7 of 9)	intron (NM_001304721, intron 7 of 9)	69141.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-144264943-4	chr2	144264828	144265028	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024225, intron 1 of 12)	intron (NM_024225, intron 1 of 12)	1274.0	NR_030762	100313519.0	Mm.453538	NR_030762	ENSMUSG00000077714	Snord17	MBI-43	small nucleolar RNA, C/D box 17	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118084025-2	chr11	118083925	118084125	+	805.099976	f1_balb.idr|f1_c57bl6.idr	intron (NM_001167746, intron 37 of 80)	intron (NM_001167746, intron 37 of 80)	45194.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-32809922-2	chr18	32809822	32810022	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045381, intron 2 of 4)	intron (NR_045381, intron 2 of 4)	-5461.0	NM_021367	53603.0	Mm.143716	NM_021367	ENSMUSG00000024379	Tslp	-	thymic stromal lymphopoietin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-89255186-2	chr6	89255086	89255286	+	614.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30539.0	NR_131021	75131.0	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	Gm44205	RIKEN cDNA 4930512J16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128393097-4	chr2	128393012	128393212	+	768.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028591, intron 1 of 1)	intron (NR_028591, intron 1 of 1)	36239.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-34605708-2	chr19	34605608	34605808	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2249.0	NM_001005858	667370.0	Mm.271850	NM_001005858	ENSMUSG00000062488	Ifit3b	I830012O16Rik	interferon-induced protein with tetratricopeptide repeats 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3788891-2	chr4	3788791	3788991	+	653.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 12 of 12)	B2_Mm2|SINE|B2	46764.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-106696078-4	chr5	106695960	106696160	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026856, intron 1 of 6)	CpG	770.0	NM_026856	52397.0	Mm.249474	NM_026856	ENSMUSG00000049606	Zfp644	1110068L01Rik|AA408882|BM-005|D5Ertd689e|Zep-2	zinc finger protein 644	protein-coding	0.294850955820917	-0.342899561033203	-0.347364742439081	0.289665322807892	-0.355686299931949	-0.341893444333784	-0.346379660007544	-0.35020949207769	-3.68284321385825	0.154969522264275	1
Merged-chr11-3191777-16	chr11	3191652	3191852	+	969.3797609999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030207, intron 1 of 32)	RCHARR1|DNA|hAT-Charlie	1711.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-34204308-2	chr10	34204208	34204408	+	766.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_172508, intron 1 of 5)	intron (NM_172508, intron 1 of 5)	3243.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-11293508-3	chr2	11293455	11293655	+	995.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008859, intron 16 of 17)	intron (NM_008859, intron 16 of 17)	-45934.0	NR_040369	100503147.0	Mm.91961	NR_040369	ENSMUSG00000086006	Gm13293	-	predicted gene 13293	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80454975-4	chr7	80454850	80455050	+	963.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_007550)	TTS (NM_007550)	-49514.0	NM_001081454	18550.0	Mm.5241	NM_011046	ENSMUSG00000030530	Furin	9130404I01Rik|Fur|PACE|Pcsk3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-31963140-2	chr4	31963040	31963240	+	736.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172688)	promoter-TSS (NM_172688)	-967.0	NM_009316	26409.0	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding	-2.18233058068552	-2.15536956715525	-2.16352280018114	-2.04193253143548	-2.18043796738662	-2.15360272754651	-2.16167708693786	-2.16902129354933	-0.683654500252594	0.846597994014493	1
Merged-chr2-79674481-2	chr2	79674381	79674581	+	709.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-33299.0	NM_172420	75276.0	Mm.257373	NM_172420	ENSMUSG00000034683	Ppp1r1c	4930565M23Rik|4930579P15Rik	protein phosphatase 1, regulatory (inhibitor) subunit 1C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-152297215-4	chr4	152297114	152297314	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_037908)	promoter-TSS (NR_037908)	0.0	NR_037908	57295.0	Mm.277464	NM_133788	ENSMUSG00000039662	Icmt	1700008E11Rik|C80758|Gm13095|HSTE14|PPMT|STE14|pcCMT	isoprenylcysteine carboxyl methyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-28757433-1	chr13	28757333	28757533	+	630.0	f0_balb.idr	intron (NR_045053, intron 3 of 8)	intron (NR_045053, intron 3 of 8)	-46560.0	NR_105787	102466635.0		NR_105787	ENSMUSG00000099158	Mir6368	Gm27800|mmu-mir-6368	microRNA 6368	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-27947439-2	chr15	27947339	27947539	+	818.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081302, intron 1 of 56)	intron (NM_001081302, intron 1 of 56)	78409.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-64928104-4	chr1	64928011	64928211	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039493, intron 2 of 7)	LTR79|LTR|ERVL	28713.0	NM_001039493	241075.0	Mm.239534	NM_175509	ENSMUSG00000051344	Plekhm3	9430067K14Rik|A230102O09Rik|AI449570|DAPR|Plekhm1l	pleckstrin homology domain containing, family M, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-171829886-2	chr2	171829786	171829986	+	992.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	132913.0	NR_040509	75655.0	Mm.396203	NR_040509	ENSMUSG00000086823	1700028P15Rik	-	RIKEN cDNA 1700028P15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-50510656-6	chr17	50510636	50510836	+	978.8412480000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013880, intron 1 of 5)	intron (NM_013880, intron 1 of 5)	1189.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-61468053-2	chr11	61467953	61468153	+	726.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER4A|LTR|ERVK	-14061.0	NM_001291024	22671.0	Mm.89201	NM_009548	ENSMUSG00000010086	Rnf112	ZNF179|Zfp179|bfp|neurolastin	ring finger protein 112	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95140695-4	chr3	95140576	95140776	+	820.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027206, intron 1 of 1)	intron (NM_027206, intron 1 of 1)	-1490.0	NR_106175	102465890.0		NR_106175	ENSMUSG00000098498	Mir8099-1	Gm27917|mmu-mir-8099-1	microRNA 8099-1	ncRNA	-0.662826441749988	-1.00555184936033	-1.01675512286785	-1.01992432642343	-0.654846858003193	-1.00312405325568	-1.01421894731451	-1.01959449741028	0.0418081237259606	0.989738874530268	1
Merged-chr13-9873625-4	chr13	9873530	9873730	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-108309.0	NM_144516	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-28005122-2	chr3	28005022	28005222	+	800.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008875, intron 1 of 25)	intron (NM_008875, intron 1 of 25)	20951.0	NM_008875	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-44484512-4	chr13	44484417	44484617	+	939.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44790.0	NR_045489	69491.0	Mm.392410	NR_045489	ENSMUSG00000098144	1700029N11Rik	-	RIKEN cDNA 1700029N11 gene	ncRNA	2.60152887581182	2.75867687834849	1.55254319564884	2.9482628373722	2.46991751873157	1.33357546323955	1.78021203140994	1.90101974345007	-1.39302381427418	0.143420002289714	0.591443869750575
Merged-chr4_GL456216_random-13910-1	chr4_GL456216_random	13810	14010	+	1000.0	f0_c57.idr	Intergenic	RLTR9E|LTR|ERVK	-1971.0	NM_001033326	236082.0	Mm.305345	NM_001033326	ENSMUSG00000063897	Dhrsx	C80877|D4Ertd296e|Dhrsxy|Pscad	dehydrogenase/reductase (SDR family) X chromosome	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-37137357-4	chr19	37137277	37137477	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290829, intron 3 of 9)	intron (NM_001290829, intron 3 of 9)	-36466.0	NR_045329	319931.0	Mm.446730	NR_045329	ENSMUSG00000097591	A330032B11Rik	-	RIKEN cDNA A330032B11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-30775517-6	chr16	30775442	30775642	+	873.8352050000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	175819.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	1.26448974421462	0.685379783953202	0.674703257693777	0.998600626606227	1.36428321126433	1.35593955302126	0.677067555026768	1.25261132642585	1.16954564109511	0.442758934189227	0.911647291190116
Merged-chr16-76363960-4	chr16	76363962	76364162	+	936.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173440, intron 1 of 3)	RLTR15|LTR|ERVK	8987.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70697279-2	chr8	70697179	70697379	+	800.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010592)	promoter-TSS (NM_010592)	-460.0	NM_010592	16478.0	Mm.419851	NM_010592	ENSMUSG00000071076	Jund	Jund1	jun D proto-oncogene	protein-coding	2.07230251838095	1.77520603135983	2.01204754669113	2.2690975155133	1.88379889774757	1.78587541658399	2.02663942120887	2.28002393976304	-0.102625528859947	0.910823673453688	0.998431161219273
Merged-chr8-108742880-3	chr8	108742772	108742972	+	754.716675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007496, intron 1 of 9)	intron (NM_007496, intron 1 of 9)	28228.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114980353-2	chr11	114980254	114980454	+	570.0	f0_balb.idr|f1_balb.idr	Intergenic	RLTR44C|LTR|ERVK	9532.0	NM_145437	217305.0	Mm.275986	NM_145437	ENSMUSG00000034641	Cd300ld	4732429D16Rik|CLM5|Cd300ld1|LMIR4|MAIR-IV|clm-5	CD300 molecule like family member d	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-25152221-2	chr1	25152121	25152321	+	565.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175642, intron 19 of 30)	intron (NM_175642, intron 19 of 30)	125733.0	NM_001204913	100504323.0	Mm.484176	NM_001204913		Gm20172	-	predicted gene, 20172	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-25467846-4	chr14	25467727	25467927	+	871.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	8642.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	-0.593971782808924	-0.229906841943083	-0.860943262579957	-0.863380900560312	-0.866824728787484	-0.852294731670505	-0.860246335031522	-0.862955084542922	-3.08409683035983	0.297545618168977	1
Merged-chr12-16889221-1	chr12	16889121	16889321	+	568.0	f1_balb.idr	Intergenic	Intergenic	-5757.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	0.266969741568592	0.287236807189738	0.280602851513239	0.701920729646463	0.652539358166047	0.911023897043748	0.282066457466921	0.816410545950821	1.95416625413982	0.311607896769563	1
Merged-chr10-36002166-2	chr10	36002066	36002266	+	569.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-504641.0	NM_001253355	319415.0	Mm.332442	NM_001081208	ENSMUSG00000044499	Hs3st5	D930005L05Rik|Gm1151|Hs3ost5	heparan sulfate (glucosamine) 3-O-sulfotransferase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-43763595-1	chr13	43763495	43763695	+	800.5	f1_balb.idr	Intergenic	B1_Mus1|SINE|Alu	-21517.0	NM_009856	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	0.730659396484999	0.436840128793005	1.10078191982893	0.416543229416264	1.72447856398533	0.676180792815879	0.427991479252733	0.622615213081286	1.24880556191985	0.45001035215771	0.916404393066723
Merged-chr8-72294855-2	chr8	72294755	72294955	+	593.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24207.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	1.282303272274	1.27473149794291	0.604738804133184	1.0608778691183	0.747371639488797	0.617124500477913	0.606977438350312	1.38134148698946	-0.880573694872284	0.578283486790499	0.965985075107763
Merged-chr5-112907569-1	chr5	112907469	112907669	+	572.0	f0_balb.idr	Intergenic	Intergenic	-11207.0	NM_028901	74376.0	Mm.441903	NM_028901	ENSMUSG00000072720	Myo18b	4932408L24Rik|4933411E19Rik|Gm448	myosin XVIIIb	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-121591712-2	chr10	121591612	121591812	+	677.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359618, intron 24 of 24)	intron (NM_001359618, intron 24 of 24)	-4918.0	NM_019786	56480.0	Mm.34580	NM_019786	ENSMUSG00000020115	Tbk1	1200008B05Rik|AI462036|AW048562	TANK-binding kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128813519-2	chr2	128813419	128813619	+	645.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4784.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	-0.0711095157649067	-0.0600389252796722	-0.0637090543577904	0.303381663250453	-0.0704299848393968	0.479167810505365	-0.0629031899073043	0.308540529558556	1.42607170129832	0.543590646427141	1
Merged-chr11-21224614-4	chr11	21224511	21224711	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14421.0	NM_139061	245944.0	Mm.170103	NM_139061	ENSMUSG00000020128	Vps54	Hcc8|Vps54l|mSLP8|wr	VPS54 GARP complex subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69924270-2	chr11	69924170	69924370	+	973.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2312.0	NM_001166593	276770.0	Mm.18026	NM_181582	ENSMUSG00000078812	Eif5a	AA410058|D19Wsu54e|Eif4d|Eif5a1|eIF-4D|eIF-5A|eIF-5A-1|eIF-5A1	eukaryotic translation initiation factor 5A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-84252275-4	chr2	84252173	84252373	+	977.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	172993.0	NM_018782	54598.0	Mm.75467	NM_018782	ENSMUSG00000059588	Calcrl	AV071593|CRLR	calcitonin receptor-like	protein-coding	4.26365289742827	4.03993381199612	4.03921029415403	4.25189034177826	4.1721817929661	3.75413749493399	3.09478954277847	3.51673357516299	-0.633921680137907	0.179473472164396	0.650876105156279
Merged-chr1-51509230-4	chr1	51509131	51509331	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_151621)	TTS (NR_151621)	-30832.0	NM_001310549	109019.0	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-30951865-2	chr1	30951765	30951965	+	782.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2110.0	NM_011200	19243.0	Mm.491181	NM_011200	ENSMUSG00000026064	Ptp4a1	AA415290|AU019864|C130021B01|Prl-1	protein tyrosine phosphatase 4a1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-85794524-6	chr1	85794422	85794622	+	682.777771	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355047, intron 1 of 9)	intron (NM_001355047, intron 1 of 9)	505.0	NM_001355047	12283.0	Mm.26135	NM_133781	ENSMUSG00000036707	Cab39	AA408805|AA960512|C78372|MO25|MO25alpha	calcium binding protein 39	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-29478495-4	chr17	29478411	29478611	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-12534.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-44005434-3	chr10	44005349	44005549	+	718.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172393)	promoter-TSS (NM_172393)	-603.0	NM_172393	11630.0	Mm.292082	NM_172393	ENSMUSG00000019866	Crybg1	AI462491|AI463325|Aim1	crystallin beta-gamma domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-86671408-1	chr17	86671308	86671508	+	930.0	f0_balb.idr	Intergenic	Intergenic	-82456.0	NM_010137	13819.0	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-93187513-4	chr2	93187421	93187621	+	973.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356535)	promoter-TSS (NM_001356535)	-27.0	NM_001356536	277414.0	Mm.41033	NM_001025246	ENSMUSG00000068735	Trp53i11	Tp53i11	transformation related protein 53 inducible protein 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-50233994-2	chr11	50233894	50234094	+	996.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_145926, intron 11 of 14)	intron (NM_145926, intron 11 of 14)	1749.0	NR_105884	102466765.0		NR_105884	ENSMUSG00000098474	Mir6919	Gm27889|mmu-mir-6919	microRNA 6919	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-106805073-4	chr6	106804967	106805167	+	984.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4980.0	NM_175357	58799.0	Mm.290085	NM_021449	ENSMUSG00000005362	Crbn	2610203G15Rik|2900045O07Rik|AF229032|AW108261|piL	cereblon	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-70415465-2	chr16	70415365	70415565	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028803, intron 3 of 15)	intron (NM_028803, intron 3 of 15)	101516.0	NM_028803	74185.0	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	-0.537420008187142	-0.526012484097918	-0.529754989517255	0.0948060579263241	-0.0570759593016932	-0.525168184633122	-0.528929981754154	-0.532135393451812	-0.511960813024051	0.855730970216827	1
Merged-chr4-105704381-3	chr4	105704266	105704466	+	877.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-536847.0	NR_151521	105244641.0	Mm.404914	NR_151521		Gm12724	-	predicted gene 12724	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-60804208-3	chr1	60804046	60804246	+	835.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1A|DNA|hAT-Charlie	57758.0	NM_007642	12487.0	Mm.255003	NM_007642	ENSMUSG00000026012	Cd28	-	CD28 antigen	protein-coding	0.677047485506402	0.411933350647833	0.40323817755698	1.16637857801577	0.386848488679705	0.413883638801438	1.13466962137433	0.979091512170451	0.331656532283296	0.854574008870046	1
Merged-chr7-28960175-2	chr7	28960075	28960275	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021895, intron 1 of 20)	intron (NM_021895, intron 1 of 20)	2157.0	NM_001360549	60595.0	Mm.81144	NM_021895	ENSMUSG00000054808	Actn4	C77391	actinin alpha 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-121237632-2	chr11	121237532	121237732	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026272, intron 1 of 10)	intron (NM_026272, intron 1 of 10)	396.0	NM_026272	67608.0	Mm.291832	NM_026272	ENSMUSG00000000056	Narf	4430402O11Rik	nuclear prelamin A recognition factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-74923617-4	chr15	74923510	74923710	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31441.0	NM_001164039	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	3.63811091788587	4.48178432725273	4.91514538738484	3.91289703626063	4.77541396966404	4.85776959299467	3.9073938714106	4.44844837031823	0.288365356503606	0.513407710076716	0.94619324199876
Merged-chr15-83128930-3	chr15	83128797	83128997	+	844.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347082, intron 7 of 7)	intron (NM_001347082, intron 7 of 7)	-6096.0	NM_029101	74778.0	Mm.30056	NM_029101	ENSMUSG00000018040	Rrp7a	1110014J01Rik|AA408146|Kheg1	ribosomal RNA processing 7 homolog A (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98949833-4	chr11	98949734	98949934	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177302, intron 2 of 9)	intron (NM_001177302, intron 2 of 9)	10123.0	NM_001177303	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118693058-2	chr9	118692958	118693158	+	997.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 14 of 27)	LTR50|LTR|ERVL	-18634.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-99664006-2	chr6	99663906	99664106	+	578.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025829, intron 1 of 6)	intron (NM_025829, intron 1 of 6)	2765.0	NM_025829	66892.0	Mm.32889	NM_025829	ENSMUSG00000093661	Eif4e3	1300018P11Rik|AI451927|eIF4E-3	eukaryotic translation initiation factor 4E member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-90508519-4	chr18	90508420	90508620	+	968.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	IAP1-MM_LTR|LTR|ERVK	-1634.0	NM_198295	67988.0	Mm.268041	NM_198295	ENSMUSG00000024614	Tmx3	6430411B10Rik|A730024F05Rik|AV259382|Txndc10|mKIAA1830	thioredoxin-related transmembrane protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-37262705-4	chr6	37262640	37262840	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347104, intron 1 of 32)	intron (NM_001347104, intron 1 of 32)	37236.0	NM_001081206	320127.0	Mm.119469	NM_001081206	ENSMUSG00000038665	Dgki	6430604M11Rik|C130010K08Rik	diacylglycerol kinase, iota	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-114378946-3	chr12	114378842	114379042	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	90524.0	NR_106062	102465663.0		NR_106062	ENSMUSG00000105438	Mir7094-1	mmu-mir-7094-1	microRNA 7094-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-5100500-2	chr7	5100389	5100589	+	854.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16422.0	NM_001145013	192658.0	Mm.28764	NM_138954	ENSMUSG00000035191	Rfpl4	D7Ertd486e|Rfpl4a	ret finger protein-like 4	protein-coding	1.23315003520404	1.18440364591006	1.13727564987918	0.645126819884378	1.33156951694105	0.66531048261407	1.1477630064348	0.646500555651646	-0.365643970545747	0.813754339865679	0.998431161219273
Merged-chr11-104311923-2	chr11	104311823	104312023	+	746.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285454, intron 6 of 9)	intron (NM_001285454, intron 6 of 9)	80487.0	NM_001285454	17762.0	Mm.1287	NM_010838	ENSMUSG00000018411	Mapt	AI413597|AW045860|Mtapt|Tau	microtubule-associated protein tau	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167776270-6	chr2	167776162	167776362	+	929.711121	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	85085.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-62553693-4	chr10	62553554	62553754	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24803.0	NM_028197	72320.0	Mm.258955	NM_028197	ENSMUSG00000036955	Kif1bp	0710007C18Rik|2510003E04Rik|KBP|mKIAA1279	KIF1 binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-109610032-2	chr13	109609942	109610142	+	588.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_011056, intron 3 of 16)	intron (NM_011056, intron 3 of 16)	285298.0	NR_030644	100124489.0		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA	0.143364780335421	0.0350311872342301	0.0311699238606829	0.167422368018765	0.43682241938492	0.468682798187451	0.0320175830823304	0.292982701543845	2.21201235771807	0.28075633105846	1
Merged-chr4-126198382-1	chr4	126198282	126198482	+	557.0	f1_balb.idr	intron (NM_001356455, intron 1 of 11)	intron (NM_001356455, intron 1 of 11)	2625.0	NM_001356456	230753.0	Mm.29813	NM_146153	ENSMUSG00000043962	Thrap3	9330151F09Rik|B230333E16Rik|Trap150	thyroid hormone receptor associated protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106355775-4	chr11	106355610	106355810	+	799.18335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-6320.0	NM_133199	110880.0	Mm.432528	NM_133199	ENSMUSG00000001027	Scn4a	Nav1.4|SkM1|mH2	sodium channel, voltage-gated, type IV, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-155297752-2	chr2	155297652	155297852	+	626.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001004721, intron 9 of 11)	intron (NM_001004721, intron 9 of 11)	21388.0	NR_046364	66734.0	Mm.196239	NM_025735	ENSMUSG00000027602	Map1lc3a	1010001H21Rik|4922501H04Rik|LC3|LC3a	microtubule-associated protein 1 light chain 3 alpha	protein-coding	2.12772287265051	1.7312656193299	1.09365540392854	1.75976689416548	2.34875291893848	1.74414554578516	1.09849343349538	1.76902063573108	0.259360922447151	0.822540121454871	0.998431161219273
Merged-chr4-155706353-2	chr4	155706253	155706453	+	696.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026899, intron 1 of 4)	B1_Mus1|SINE|Alu	1538.0	NM_026899	68991.0	Mm.294770	NM_026899	ENSMUSG00000029038	Ssu72	1190002E22Rik|1500011L16Rik|2610101M12Rik	Ssu72 RNA polymerase II CTD phosphatase homolog (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-92339192-2	chr14	92339092	92339292	+	636.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1VL4|LINE|L1	1551477.0	NM_001271800	211712.0	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-101605300-2	chr3	101605200	101605400	+	620.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144900)	promoter-TSS (NM_144900)	-593.0	NM_144900	11928.0	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99962482-2	chr7	99962382	99962582	+	622.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175388, intron 1 of 5)	intron (NM_175388, intron 1 of 5)	17976.0	NM_175388	108937.0	Mm.323087	NM_175388	ENSMUSG00000058761	Rnf169	2900057K09Rik	ring finger protein 169	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-118006017-2	chr2	118005917	118006117	+	611.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_126479, intron 8 of 9)	intron (NR_126479, intron 8 of 9)	105185.0	NR_126479	329496.0	Mm.235844	NR_126479	ENSMUSG00000087203	Gm13986	C230060E24	predicted gene 13986	ncRNA	-0.348022913636178	-0.332963212679769	0.462207303718087	0.221264599262642	-0.347077806766099	-0.331857689779512	-0.336792766782257	-0.341017390678328	-3.76402414384865	0.139285091997185	1
Merged-chr19-9954657-4	chr19	9954538	9954738	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25962.0	NR_073181	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-90597182-2	chr6	90597082	90597282	+	751.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356412, intron 21 of 22)	intron (NM_001356412, intron 21 of 22)	-7698.0	NM_027868	71699.0	Mm.272633	NM_027868	ENSMUSG00000030089	Slc41a3	1010001P06Rik|AI480742|SLC41A1-L2	solute carrier family 41, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-67048025-2	chr11	67047925	67048125	+	748.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025510, intron 2 of 4)	RMER6B|LTR|ERVK	4593.0	NM_025510	66358.0	Mm.22511	NM_025510	ENSMUSG00000020910	Adprm	2310004I24Rik|MDS006	ADP-ribose/CDP-alcohol diphosphatase, manganese dependent	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-94559499-3	chr16	94559364	94559564	+	745.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10742.0	NM_007890	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-66846504-2	chr10	66846404	66846604	+	716.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A1|LTR|ERVL-MaLR	73880.0	NR_138560	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-61264209-2	chr19	61264109	61264309	+	792.625	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR33|LTR|ERVK	-35791.0	NM_009970	12982.0	Mm.287228	NM_009970	ENSMUSG00000059326	Csf2ra	CD116|Csfgmra|GM-CSF-Ra|GM-CSFR	colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-38123977-4	chr11	38123869	38124069	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	396076.0	NR_040295	100502917.0	Mm.61144	NR_040295		Gm12130	-	predicted gene 12130	ncRNA	4.39173673738199	3.88711828405305	4.44216191894889	4.56665197269293	5.20249938389528	5.15095189940781	4.67535695743287	4.4474198531366	0.69252087133948	0.0663424056353725	0.386381980203298
Merged-chr3-30855962-8	chr3	30855947	30856147	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001134386)	promoter-TSS (NM_001134386)	97.0	NM_001286994	71862.0	Mm.272019	NM_027965	ENSMUSG00000037661	Gpr160	1700025D19Rik|GPCR150	G protein-coupled receptor 160	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-73139953-4	chr14	73139849	73140049	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A1|LTR|ERVL-MaLR	-2561.0	NM_001170694	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-85901722-2	chr1	85901622	85901822	+	739.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_022417, intron 1 of 5)	intron (NM_022417, intron 1 of 5)	7212.0	NM_022417	64294.0	Mm.29870	NM_022417	ENSMUSG00000026223	Itm2c	3110038L02Rik|BRI3|Bricd2c|E25|E25C|ITM3	integral membrane protein 2C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-119489473-2	chr6	119489373	119489573	+	923.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009525, intron 1 of 4)	MTC|LTR|ERVL-MaLR	9805.0	NM_133940	101358.0	Mm.125477	NM_133940	ENSMUSG00000030019	Fbxl14	AW322056|Fbx14l	F-box and leucine-rich repeat protein 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-20714029-4	chr18	20713914	20714114	+	997.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019737, intron 3 of 8)	intron (NM_019737, intron 3 of 8)	32390.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-121428770-2	chr14	121428670	121428870	+	572.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-49540.0	NM_145465	223255.0	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-83750733-2	chr8	83750639	83750839	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9428.0	NM_001163031	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	-0.219711355542923	-0.756277302245537	-0.75931612068893	-0.761653780761687	-0.391964611888452	-0.755590941894944	-0.758646744977994	-0.761245834329488	-0.676295854267163	0.822509139760631	1
Merged-chr10-22166212-4	chr10	22166125	22166325	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359809, intron 1 of 7)	intron (NM_001359809, intron 1 of 7)	-7272.0	NM_198193	379043.0	Mm.439724	NM_198193	ENSMUSG00000053219	Raet1e	-	retinoic acid early transcript 1E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-137409617-2	chr6	137409517	137409717	+	999.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_011216, intron 12 of 26)	intron (NM_011216, intron 12 of 26)	-1104.0	NM_001164402	19277.0	Mm.186361	NM_011216	ENSMUSG00000030223	Ptpro	D28|GLEPP1|PTPBK|PTPROt|PTPU2|PTPoc|PTPphi|Ptpn15|R-PTP-O	protein tyrosine phosphatase, receptor type, O	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-106157492-2	chr8	106157392	106157592	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357319, intron 2 of 5)	intron (NM_001357319, intron 2 of 5)	7138.0	NM_001357319	192654.0	Mm.284770	NM_133792	ENSMUSG00000031903	Pla2g15	ACS|C87498|LLPL|Lpla2|Lypla3	phospholipase A2, group XV	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-108281686-2	chr4	108281586	108281786	+	666.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033634, intron 1 of 13)	intron (NM_001033634, intron 1 of 13)	19404.0	NM_001033634	414872.0	Mm.426241	NM_001033634	ENSMUSG00000034636	Zyg11b	1110046I03Rik|2810482G21Rik|D4Mgi23|Gm431|mKIAA1730	zyg-ll family member B, cell cycle regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-136834057-4	chr3	136833971	136834171	+	882.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008913, intron 2 of 13)	intron (NM_008913, intron 2 of 13)	164005.0	NM_001293622	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141302059-3	chr4	141301891	141302091	+	720.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010139, intron 1 of 16)	intron (NM_010139, intron 1 of 16)	770.0	NM_010139	13836.0	Mm.2581	NM_010139	ENSMUSG00000006445	Epha2	AW545284|Eck|Myk2|Sek-2|Sek2	Eph receptor A2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-34169505-4	chr5	34169364	34169564	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289804)	promoter-TSS (NM_001289804)	-40.0	NM_146159	231123.0	Mm.319286	NM_146159	ENSMUSG00000079555	Haus3	D4S43h|D5H4S43|D5H4S43E	HAUS augmin-like complex, subunit 3	protein-coding	5.31595799238175	5.18735536876139	5.30608054586523	5.26673723762294	5.50560711403135	4.65943402908713	4.77035869051881	5.2308447785991	-0.201844314210429	0.518377839678939	0.947641799425091
Merged-chr13-54589022-2	chr13	54588922	54589122	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178605, intron 2 of 4)	intron (NM_178605, intron 2 of 4)	1052.0	NM_178605	28126.0	Mm.439993	NM_178605	ENSMUSG00000025869	Nop16	AA409471|D13Wsu177e	NOP16 nucleolar protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-150597767-2	chr5	150597667	150597867	+	542.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3242.0	NM_133898	100637.0	Mm.279932	NM_133898	ENSMUSG00000041132	N4bp2l1	2410024N18Rik|AI428195|B230342M21Rik	NEDD4 binding protein 2-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-46553240-2	chr18	46553140	46553340	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21293.0	NM_173394	225471.0	Mm.149280	NM_173394	ENSMUSG00000056130	Ticam2	B430113A10|TICAM-2|TRAM|Tirp|Trif	toll-like receptor adaptor molecule 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-54482692-2	chr18	54482592	54482792	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60397.0	NR_040338	77433.0	Mm.159919	NR_040338		Redrum	9430076G02Rik	Redrum, erythroid developmental long intergenic non-protein coding transcript	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-23135053-4	chr19	23134940	23135140	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-6186.0	NM_010638	16601.0	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|Gm9971	Kruppel-like factor 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-26961910-4	chr8	26961791	26961991	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15445.0	NM_001101502	353310.0	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-92741566-4	chr7	92741466	92741666	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029494)	promoter-TSS (NM_029494)	-107.0	NR_015510	666737.0	Mm.473620	NR_015510	ENSMUSG00000074024	4632427E13Rik	AU015482	RIKEN cDNA 4632427E13 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52978692-2	chr13	52978592	52978792	+	657.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_017373, intron 1 of 1)	CpG	2347.0	NM_017373	18030.0	Mm.136604	NM_017373	ENSMUSG00000056749	Nfil3	AV225605|E4BP4	nuclear factor, interleukin 3, regulated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-48965777-4	chr13	48965694	48965894	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033268, intron 1 of 17)	intron (NM_001033268, intron 1 of 17)	2034.0	NM_001033268	218236.0	Mm.426571	NM_001033268	ENSMUSG00000038014	Fam120a	C9orf10|Ossa	family with sequence similarity 120, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-73351766-2	chr8	73351666	73351866	+	890.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001317391, intron 1 of 15)	intron (NM_001317391, intron 1 of 15)	1774.0	NM_001317391	16795.0	Mm.324371	NM_010687	ENSMUSG00000004383	Large1	BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd	LARGE xylosyl- and glucuronyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27761929-4	chr2	27761811	27762011	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011305, exon 10 of 10)	3' UTR (NM_011305, exon 10 of 10)	51328.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-49207075-2	chr13	49206975	49207175	+	759.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026738, intron 2 of 5)	MTC|LTR|ERVL-MaLR	8951.0	NM_026738	68480.0	Mm.3336	NM_026738	ENSMUSG00000037960	Card19	1110007C09Rik|AI851695|Bincard	caspase recruitment domain family, member 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116469310-2	chr11	116469210	116469410	+	619.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14963.0	NM_001033267	217341.0	Mm.387352	NM_001033267	ENSMUSG00000070331	Qrich2	Gm66	glutamine rich 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-56295312-4	chr8	56295217	56295417	+	810.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008278, intron 2 of 6)	intron (NM_008278, intron 2 of 6)	765.0	NM_008278	15446.0	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-12286804-2	chr12	12286704	12286904	+	838.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_029758, intron 2 of 12)	intron (NM_029758, intron 2 of 12)	24665.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-20468841-2	chr13	20468741	20468941	+	765.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 16 of 21)	intron (NM_080288, intron 16 of 21)	-4149.0	NM_198093	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100930176-2	chr11	100930076	100930276	+	672.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_213660, intron 1 of 23)	Charlie1|DNA|hAT-Charlie	9364.0	NM_213660	20848.0	Mm.249934	NM_011486	ENSMUSG00000004040	Stat3	1110034C02Rik|AW109958|Aprf	signal transducer and activator of transcription 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-172496315-2	chr1	172496215	172496415	+	889.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001145800, exon 17 of 21)	exon (NM_001145800, exon 17 of 21)	-3931.0	NM_178598	21346.0	Mm.271711	NM_178598	ENSMUSG00000026547	Tagln2	2700094C18Rik|SM22beta|Sm22B|Sm22a	transgelin 2	protein-coding	-1.84335282827126	-1.8131721693203	-1.82229904969614	-1.82979614098203	-1.69762670694229	-1.6675868413945	-1.82023292403457	-1.82845416522631	1.43472749533542	0.684151459466795	1
Merged-chr2-129320175-4	chr2	129320072	129320272	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10200.0	NM_010554	16175.0	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-164953418-3	chr2	164953311	164953511	+	935.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013599, exon 11 of 13)	exon (NM_013599, exon 11 of 13)	5192.0	NM_013599	17395.0	Mm.4406	NM_013599	ENSMUSG00000017737	Mmp9	AW743869|B/MMP9|Clg4b|Gel B|MMP-9|pro-MMP-9	matrix metallopeptidase 9	protein-coding	2.38942664499626	1.28244547912858	2.41042525503364	2.43539066560892	2.81245214271615	1.28952439222549	1.5179797197206	2.44846757042672	-0.0528622079759481	0.960005734156475	0.998431161219273
Merged-chr15-72716674-1	chr15	72716574	72716774	+	586.0	f0_balb.idr	intron (NM_029640, intron 18 of 21)	intron (NM_029640, intron 18 of 21)	93650.0	NR_002864	353342.0	Mm.440245	NR_002864	ENSMUSG00000106847	Peg13	-	paternally expressed 13	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-83323776-1	chr4	83323676	83323876	+	1000.0	f0_balb.idr	intron (NM_027238, intron 1 of 19)	CpG	413.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	1.91156983483624	1.72282933792191	2.08759748213496	3.58730951040751	2.88376458484086	2.87866511822545	3.05203921816675	1.62279787385397	0.21952771345465	0.805698834992799	0.998431161219273
Merged-chr3-116649543-3	chr3	116649449	116649649	+	703.333313	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	intron (NM_008246, intron 2 of 11)	intron (NM_008246, intron 2 of 11)	13128.0	NM_008246	15247.0	Mm.280077	NM_008246	ENSMUSG00000089911	Mfsd14a	Hiat1	major facilitator superfamily domain containing 14A	protein-coding	2.04823558634128	1.94837653917527	3.29331738048171	1.83169029019606	2.75553968641515	1.7332206146371	2.72567705787323	2.81685312141819	0.254944824908834	0.770587844790161	0.998431161219273
Merged-chr4-132024016-2	chr4	132023916	132024116	+	617.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_183428, intron 1 of 20)	ORR1B1|LTR|ERVL-MaLR	25062.0	NM_001128606	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-32779338-4	chr19	32779222	32779422	+	917.8250119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008960, intron 2 of 8)	intron (NM_008960, intron 2 of 8)	21745.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-59778720-4	chr11	59778622	59778822	+	736.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_012027, exon 24 of 24)	3' UTR (NM_012027, exon 24 of 24)	8500.0	NR_110894	194908.0	Mm.344651	NM_183139	ENSMUSG00000043648	Pld6	4933433K01Rik|Gm10|Zuc|mZuc|mitoPLD	phospholipase D family, member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-20954408-2	chr10	20954308	20954508	+	906.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358561, intron 1 of 22)	intron (NM_001358561, intron 1 of 22)	1861.0	NM_001358561	52906.0	Mm.253280	NM_026203	ENSMUSG00000019986	Ahi1	1700015F03Rik|Ahi-1|D10Bwg0629e	Abelson helper integration site 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-41019454-4	chr8	41019332	41019532	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015457, intron 1 of 2)	intron (NR_015457, intron 1 of 2)	1964.0	NR_015457	78849.0	Mm.440930	NR_015457	ENSMUSG00000084960	B430010I23Rik	-	RIKEN cDNA B430010I23 gene	ncRNA	2.67258082343004	3.8474438827203	3.21802618214808	2.93468943949155	3.07039228354139	3.9889078077581	2.52500672818968	2.07771451317178	-0.194217432914844	0.784824479677309	0.998431161219273
Merged-chr12-32200812-5	chr12	32200678	32200878	+	968.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020272, intron 3 of 10)	intron (NM_020272, intron 3 of 10)	7560.0	NM_001146201	30955.0	Mm.101369	NM_020272	ENSMUSG00000020573	Pik3cg	5830428L06Rik|PI3Kgamma|p110gamma	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-54956568-4	chr6	54956486	54956686	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172729, intron 1 of 11)	intron (NM_172729, intron 1 of 11)	15075.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-103002424-2	chr11	103002324	103002524	+	759.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_026551, intron 1 of 4)	RCHARR1|DNA|hAT-Charlie	-2503.0	NR_105896	102466988.0		NR_105896	ENSMUSG00000098613	Mir6931	Gm27303|mmu-mir-6931	microRNA 6931	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27019125-2	chr17	27019028	27019228	+	970.25	f1_balb.idr|f1_c57bl6.idr	TTS (NM_007523)	TTS (NM_007523)	1093.0	NM_001251881	70772.0	Mm.440437	NM_027544	ENSMUSG00000048731	Ggnbp1	0610031G08Rik|mdf	gametogenetin binding protein 1	protein-coding	1.35482758770173	0.258273437575209	0.450438214998997	0.839801211202604	0.543935605150079	0.260185941604813	0.251624721009399	0.244245592529846	-2.93467698974926	0.128739869808467	1
Merged-chr7-31000748-4	chr7	31000614	31000814	+	789.387512	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18793.0	NM_001242647	76415.0	Mm.259739	NM_175240	ENSMUSG00000046826	Fam187b	1700020B09Rik|Tmem162	family with sequence similarity 187, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-50303088-2	chr6	50302988	50303188	+	825.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001347213, exon 21 of 24)	exon (NM_001347213, exon 21 of 24)	-41319.0	NM_018769	54722.0	Mm.248361	NM_018769	ENSMUSG00000029821	Gsdme	2310037D07Rik|4932441K13Rik|Dfna5|Dfna5h|EG14210|Fin15	gasdermin E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-18679376-2	chr16	18679276	18679476	+	667.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49438.0	NM_213614	18951.0	Mm.20365	NM_213614	ENSMUSG00000072214	Sept5	Cdcrel-1|Cdcrel1|Pnutl1	septin 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-118930741-4	chr12	118930648	118930848	+	980.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029961, intron 11 of 27)	intron (NM_029961, intron 11 of 27)	35673.0	NM_029961	77706.0	Mm.261496	NM_029961	ENSMUSG00000072791	Abcb5	9230106F14Rik	ATP-binding cassette, sub-family B (MDR/TAP), member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-131272096-4	chr3	131272000	131272200	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008212)	promoter-TSS (NM_008212)	1.0	NM_008212	15107.0	Mm.260164	NM_008212	ENSMUSG00000027984	Hadh	AA409008|AU019341|AW742602|HCDH|Hadhsc|Schad	hydroxyacyl-Coenzyme A dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-84618008-2	chr12	84617908	84618108	+	768.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008992)	promoter-TSS (NM_008992)	-542.0	NM_008992	19300.0	Mm.229109	NM_008992	ENSMUSG00000021240	Abcd4	P69r|P70R|Pxmp1l	ATP-binding cassette, sub-family D (ALD), member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56357719-4	chr17	56357595	56357795	+	731.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172132, intron 5 of 22)	intron (NM_172132, intron 5 of 22)	31645.0	NM_001357909	193796.0	Mm.45047	NM_172132	ENSMUSG00000024201	Kdm4b	4732474L06Rik|Jmjd2b	lysine (K)-specific demethylase 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-41303257-4	chr10	41303154	41303354	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133999)	promoter-TSS (NM_133999)	-13.0	NM_133999	103199.0	Mm.277242	NM_133999	ENSMUSG00000038417	Fig4	A530089I17Rik|AI326867|Sac3	FIG4 phosphoinositide 5-phosphatase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122432540-4	chr8	122432452	122432652	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301284, intron 1 of 4)	intron (NM_001301284, intron 1 of 4)	388.0	NM_001301284	13057.0	Mm.271671	NM_007806	ENSMUSG00000006519	Cyba	b558|nmf333|p22-phox|p22phox	cytochrome b-245, alpha polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-147084181-2	chr2	147084155	147084355	+	780.083374	f1_balb.idr|f1_c57bl6.idr	exon (NM_023504, exon 2 of 2)	exon (NM_023504, exon 2 of 2)	1090.0	NM_023504	228731.0	Mm.315498	NM_023504	ENSMUSG00000054160	Nkx2-4	1700001P03Rik|Nkx-2.4|tinman	NK2 homeobox 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16044873-2	chr7	16044773	16044973	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26972.0	NM_001347559	666528.0	Mm.290718	NM_001099277	ENSMUSG00000078796	Zfp541	EG666528|Znf541	zinc finger protein 541	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-71861098-1	chr5	71860998	71861198	+	721.0	f1_balb.idr	intron (NM_008069, intron 3 of 8)	intron (NM_008069, intron 3 of 8)	161082.0	NM_008069	14400.0	Mm.38567	NM_008069	ENSMUSG00000029212	Gabrb1	AW061132|B230208N19Rik|Gabrb-1	gamma-aminobutyric acid (GABA) A receptor, subunit beta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-124620024-4	chr2	124619927	124620127	+	884.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291000, intron 1 of 18)	intron (NM_001291000, intron 1 of 18)	9731.0	NM_172537	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-36868917-1	chr14	36868817	36869017	+	548.0	f1_balb.idr	Intergenic	Intergenic	50618.0	NM_001347503	72972.0	Mm.27621	NM_027045	ENSMUSG00000058690	Ccser2	1700012P13Rik|2900054P12Rik|AI035535|AW108503|Fam190b|Gcap14	coiled-coil serine rich 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-95701209-3	chr16	95701073	95701273	+	856.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1234.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-51288080-4	chr17	51287979	51288179	+	995.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_037268, intron 3 of 4)	intron (NR_037268, intron 3 of 4)	10091.0	NR_037253	100526485.0		NR_037253	ENSMUSG00000105330	Mir669a-6	mmu-mir-669a-6	microRNA 669a-6	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-118554888-1	chr2	118554788	118554988	+	1000.0	f0_c57.idr	Intergenic	IAPLTR2_Mm|LTR|ERVK	-5202.0	NM_138313	171543.0	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-102140764-4	chr15	102140670	102140870	+	901.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3416.0	NM_008344	16012.0	Mm.358609	NM_008344	ENSMUSG00000023046	Igfbp6	IGFBP-6	insulin-like growth factor binding protein 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-4110706-3	chr13	4110632	4110832	+	639.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39899.0	NM_134066	105349.0	Mm.41337	NM_134066	ENSMUSG00000021214	Akr1c18	AW146047	aldo-keto reductase family 1, member C18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131913541-2	chr1	131913441	131913641	+	611.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145804, intron 1 of 6)	RSINE1|SINE|B4	3083.0	NM_175294	98415.0	Mm.246869	NM_175294	ENSMUSG00000026434	Nucks1	2700010L10Rik|8430423A01Rik|AI647518|C78391|Nucks	nuclear casein kinase and cyclin-dependent kinase substrate 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114168385-3	chr11	114168307	114168507	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29851.0	NR_045930	73536.0	Mm.54275	NR_045930	ENSMUSG00000078600	1700092K14Rik	-	RIKEN cDNA 1700092K14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125354977-6	chr6	125354912	125355112	+	924.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011609, intron 1 of 9)	intron (NM_011609, intron 1 of 9)	5289.0	NM_011609	21937.0	Mm.1258	NM_011609	ENSMUSG00000030341	Tnfrsf1a	CD120a|FPF|TNF-R|TNF-R-I|TNF-R1|TNF-R55|TNF-alphaR1|TNFAR|TNFR60|TNFRI|TNFRp55|TNFalpha-R1|Tnfr-2|Tnfr1|p55|p55-R	tumor necrosis factor receptor superfamily, member 1a	protein-coding	3.12850228477678	2.77925330133401	2.0530893170427	2.1470620619372	2.99345613499889	1.43896659414304	2.06927886547677	2.2930969830625	-0.564751029719894	0.52722230507721	0.948839578239191
Merged-chr19-45283553-2	chr19	45283453	45283653	+	572.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48317.0	NM_010691	16814.0	Mm.116815	NM_010691	ENSMUSG00000025216	Lbx1	Lbx1h	ladybird homeobox 1	protein-coding	0.118303324965426	0.271174894502134	-0.336627283284024	-0.339810376579668	-0.344300545767709	-0.331561925181216	-0.157991222049	-0.339254635718433	-2.68798188554218	0.278609880447751	1
Merged-chr16-4489276-4	chr16	4489185	4489385	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361474, intron 3 of 5)	intron (NM_001361474, intron 3 of 5)	33790.0	NM_001347162	106393.0	Mm.35811	NM_175347	ENSMUSG00000022519	Srl	9830004M20Rik|AW108387|sar	sarcalumenin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97280699-4	chr6	97280616	97280816	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27936.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	2.50537404739068	1.83478513193468	2.2285628849918	2.64089411589576	1.48229544628565	2.029470278474	1.79025016683326	2.72915585218858	-0.550610127445136	0.551258881460327	0.959195395405638
Merged-chr17-48265564-3	chr17	48265469	48265669	+	824.900024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033922, intron 2 of 5)	intron (NM_001033922, intron 2 of 5)	1274.0	NM_001163796	224840.0	Mm.131234	NM_172623	ENSMUSG00000051682	Treml4	5031403H21Rik|BB137214|IDCP1|TLT-4|TLT4|Treml3	triggering receptor expressed on myeloid cells-like 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-70669354-2	chr2	70669254	70669454	+	725.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_027352, intron 1 of 9)	intron (NM_027352, intron 1 of 9)	7845.0	NM_027352	70231.0	Mm.271950	NM_027352	ENSMUSG00000014959	Gorasp2	0610011A07Rik|2410043M02Rik|5730520M13Rik|9430094F20Rik|AW552058|GOLPH2|GRASP55|GRS2|p59	golgi reassembly stacking protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-83510424-3	chr15	83510326	83510526	+	770.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357953, intron 1 of 11)	intron (NM_001357953, intron 1 of 11)	481.0	NM_178869	319953.0	Mm.235007	NM_178869	ENSMUSG00000022442	Ttll1	6330444E16Rik|AV014541	tubulin tyrosine ligase-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-121348235-4	chr9	121348142	121348342	+	774.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152160, intron 1 of 17)	intron (NR_152160, intron 1 of 17)	-18716.0	NM_001357973	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-16225598-4	chr1	16225499	16225699	+	901.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	119717.0	NM_133832	98711.0	Mm.274376	NM_133832	ENSMUSG00000025921	Rdh10	3110069K09Rik|4921506A21Rik|AI875664|AW549993|D1Ertd762e|m366Asp	retinol dehydrogenase 10 (all-trans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107871701-2	chr9	107871601	107871801	+	563.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029169, intron 1 of 20)	intron (NM_029169, intron 1 of 20)	1118.0	NM_011251	19654.0	Mm.139926	NM_011251	ENSMUSG00000032582	Rbm6	4930506F14Rik|Def-3|NY-LU-12|g16|mKIAA4015	RNA binding motif protein 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-113486652-4	chr13	113486559	113486759	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045501, intron 1 of 6)	intron (NR_045501, intron 1 of 6)	16185.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-49203585-2	chr13	49203485	49203685	+	982.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_026738, intron 5 of 5)	intron (NM_026738, intron 5 of 5)	12441.0	NM_026738	68480.0	Mm.3336	NM_026738	ENSMUSG00000037960	Card19	1110007C09Rik|AI851695|Bincard	caspase recruitment domain family, member 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-62651337-4	chr10	62651231	62651431	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053183)	promoter-TSS (NM_053183)	-113.0	NM_053183	94213.0	Mm.114116	NM_053183	ENSMUSG00000020076	Ddx50	4933429B04Rik|8430408E17Rik|GU2|RH-II	DEAD (Asp-Glu-Ala-Asp) box polypeptide 50	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-27630756-4	chr15	27630660	27630860	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001013792)	promoter-TSS (NM_001013792)	-67.0	NM_001013792	432940.0	Mm.309164	NM_001013792	ENSMUSG00000046034	Otulin	C79097|Fam105b|m3Sapc|m7-1Sapc	OTU deubiquitinase with linear linkage specificity	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-42842503-3	chr10	42842398	42842598	+	818.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18014.0	NM_172938	268297.0	Mm.98731	NM_172938	ENSMUSG00000044770	Scml4	9330161D17|mFLJ00197	Scm polycomb group protein like 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-27414126-2	chr14	27414026	27414226	+	958.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14708.0	NM_028945	218850.0	Mm.247767	NM_028945	ENSMUSG00000040651	Fam208a	4732418E12|4933409E02Rik|D14Abb1e|MommeD6	family with sequence similarity 208, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-120480568-3	chr6	120480485	120480685	+	976.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008359, intron 12 of 12)	intron (NM_008359, intron 12 of 12)	13222.0	NM_033567	94047.0	Mm.23088	NM_033567	ENSMUSG00000094626	Tmem121b	AW048664|Cecr6	transmembrane protein 121B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-29527302-4	chr16	29527188	29527388	+	912.616699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164613, intron 2 of 21)	intron (NM_001164613, intron 2 of 21)	14195.0	NM_172613	224079.0	Mm.54954	NM_172613	ENSMUSG00000038094	Atp13a4	4631413J11Rik|4832416L12|9330174J19Rik	ATPase type 13A4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-58568710-2	chr2	58568610	58568810	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289660, intron 1 of 7)	intron (NM_001289660, intron 1 of 7)	1376.0	NM_001289660	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-36684916-1	chr15	36684816	36685016	+	639.0	f0_balb.idr	Intergenic	Intergenic	-75943.0	NM_008774	18458.0	Mm.371570	NM_008774	ENSMUSG00000022283	Pabpc1	PABP|Pabp1|PabpI|Pabpl1|ePAB	poly(A) binding protein, cytoplasmic 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-8870623-2	chr13	8870535	8870735	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_001039388, intron 1 of 13)	intron (NM_001039388, intron 1 of 13)	409.0	NM_001039389	207615.0	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-39196743-4	chr18	39196627	39196827	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361073, intron 11 of 21)	intron (NM_001361073, intron 11 of 21)	203582.0	NM_175164	71302.0	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-83896047-3	chr8	83895915	83896115	+	821.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4083.0	NM_181039	330814.0	Mm.260733	NM_181039	ENSMUSG00000013033	Adgrl1	2900070I05Rik|AI182398|CLIBA|Lec2|Lphn1|mKIAA0821	adhesion G protein-coupled receptor L1	protein-coding	-1.09023476881675	-1.0685616793477	-1.08010276399472	-1.08680311188322	-1.08972458488482	-0.884466728634356	-1.07749011540401	-0.536554635628582	2.81372082530117	0.373068459979307	1
Merged-chr8-71520687-1	chr8	71520587	71520787	+	565.0	f1_balb.idr	Intergenic	Intergenic	-8918.0	NM_032398	84094.0	Mm.260768	NM_032398	ENSMUSG00000034845	Plvap	MECA32|Pv1	plasmalemma vesicle associated protein	protein-coding	-0.367655482820582	-0.620423333016746	-0.623860868548411	-0.626507963757932	-0.485630193599832	-0.00173430774588768	-0.623103326738129	-0.626045844233355	1.62899591235273	0.545868178732175	1
Merged-chr8-72350226-4	chr8	72350127	72350327	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007944, intron 22 of 23)	intron (NM_007944, intron 22 of 23)	31165.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	3.08781930599436	3.45890328290929	2.56037574642431	1.98898524890076	3.46484352576077	1.60544209959429	3.13229288346778	3.11867409444184	0.194215626601812	0.806472470037286	0.998431161219273
Merged-chr19-45075591-1	chr19	45075491	45075691	+	799.0	f0_balb.idr	promoter-TSS (NM_001362397)	promoter-TSS (NM_001362397)	350.0	NM_001362398	107250.0	Mm.24417	NM_178929	ENSMUSG00000025213	Kazald1	AI842353|Bono1|IGFBP-rP10	Kazal-type serine peptidase inhibitor domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-52783061-4	chr5	52782940	52783140	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001308144)	promoter-TSS (NM_001308144)	-15.0	NM_001308144	78796.0	Mm.266886	NM_030185	ENSMUSG00000029179	Zcchc4	4930449I23Rik	zinc finger, CCHC domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-63684789-2	chr18	63684689	63684889	+	559.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016792, intron 1 of 7)	intron (NM_016792, intron 1 of 7)	7570.0	NM_016792	53382.0	Mm.19169	NM_016792	ENSMUSG00000024583	Txnl1	32kDa|TRP32|Txnl	thioredoxin-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-60259861-4	chr10	60259768	60259968	+	975.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17760.0	NM_001146123	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-71768249-1	chr12	71768149	71768349	+	562.0	f1_balb.idr	Intergenic	ID4|SINE|ID	-62819.0	NM_026102	208846.0	Mm.87417	NM_026102	ENSMUSG00000034574	Daam1	-	dishevelled associated activator of morphogenesis 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-4583258-1	chr5	4583158	4583358	+	869.0	f0_balb.idr	Intergenic	Intergenic	174958.0	NM_021457	14362.0	Mm.246003	NM_021457	ENSMUSG00000044674	Fzd1	AW227548|FZ-1|Fz1	frizzled class receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-109027647-2	chr9	109027547	109027747	+	561.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_173019, exon 11 of 14)	exon (NM_173019, exon 11 of 14)	-10920.0	NM_001284332	66940.0	Mm.196533	NM_025858	ENSMUSG00000025647	Shisa5	2310008D10Rik|6430628I05Rik|Scotin|mShisa5	shisa family member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47506678-2	chr17	47506578	47506778	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081635, intron 1 of 6)	intron (NM_001081635, intron 1 of 6)	1627.0	NM_001081635	12445.0	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-149795194-1	chr4	149795094	149795294	+	731.0	f1_c57bl6.idr	Intergenic	Intergenic	-20927.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	1.39625499324087	1.74931270553214	1.69394578935927	2.07914841668709	1.73664109071721	2.23369289461679	2.72164592919024	2.48330258145244	1.54628817886671	0.103439810748238	0.500914100336688
Merged-chr2-124577100-4	chr2	124576985	124577185	+	958.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290997, intron 5 of 20)	intron (NM_001290997, intron 5 of 20)	-33211.0	NM_199238	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-93431066-3	chr10	93430962	93431162	+	905.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2045.0	NR_106161	102465791.0		NR_106161	ENSMUSG00000098679	Mir7688	Gm27874|mmu-mir-7688	microRNA 7688	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-62186214-3	chr18	62186123	62186323	+	905.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6123.0	NM_001013754	225609.0	Mm.296917	NM_001013754	ENSMUSG00000054589	Gm9949	EG225609	predicted gene 9949	protein-coding	0.847707917948509	0.489849415627011	0.66146731648145	0.784449724782248	1.27500112171872	0.690611225151097	0.483694142030255	0.913508566053371	0.987632327189948	0.535785812287459	1
Merged-chr4-149774287-4	chr4	149774173	149774373	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027460)	promoter-TSS (NM_027460)	-6.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-54591365-2	chr13	54591265	54591465	+	855.083374	f1_balb.idr|f1_c57bl6.idr	TTS (NM_025933)	TTS (NM_025933)	1134.0	NM_025933	67044.0	Mm.29353	NM_025933	ENSMUSG00000025868	Higd2a	2010110M21Rik|AA690237	HIG1 domain family, member 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-93214976-2	chr2	93214876	93215076	+	786.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_183180, intron 5 of 9)	intron (NM_183180, intron 5 of 9)	27428.0	NM_001025246	277414.0	Mm.41033	NM_001025246	ENSMUSG00000068735	Trp53i11	Tp53i11	transformation related protein 53 inducible protein 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-34131542-4	chr10	34131444	34131644	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3572.0	NM_175449	215900.0	Mm.34479	NM_175449	ENSMUSG00000046031	Fam26f	A630077B13Rik|Calhm6	family with sequence similarity 26, member F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-124606369-2	chr2	124606269	124606469	+	729.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290997, intron 5 of 20)	intron (NM_001290997, intron 5 of 20)	-3927.0	NM_199238	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-105869469-3	chr12	105869369	105869569	+	868.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10B|LTR|ERVL	84772.0	NM_001347440	18789.0	Mm.255877	NM_011112	ENSMUSG00000021111	Papola	Pap|PapIII|Plap	poly (A) polymerase alpha	protein-coding	1.92007943910198	1.87335135696795	1.17161593678974	1.38968921976397	1.93691209666771	1.70210126140016	2.75734411023778	2.66913162937694	1.86493767662986	0.066482893165892	0.386885656023691
Merged-chr19-57079823-3	chr19	57079737	57079937	+	756.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001103178, exon 3 of 20)	exon (NM_001103178, exon 3 of 20)	39187.0	NM_001347459	226251.0	Mm.217161	NM_178688	ENSMUSG00000025085	Ablim1	2210411C18Rik|2610209L21Rik|4833406P10Rik|9330196J19Rik|AV079770|AW060987|AW215784|Limab1|mKIAA0059	actin-binding LIM protein 1	protein-coding	-1.25043705834432	-1.22344025710165	-1.23393384777392	-1.24255359558995	-1.10155481940592	-1.22116625222791	-0.775165256172952	-1.24101066485209	2.4860994894339	0.452464134362524	1
Merged-chr11-115692980-4	chr11	115692882	115693082	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001313936, intron 2 of 5)	intron (NM_001313936, intron 2 of 5)	6552.0	NM_001313937	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-60469018-2	chr3	60468918	60469118	+	828.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3812.0	NM_001253713	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132610760-4	chr4	132610669	132610869	+	966.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28277.0	NM_210071	14050.0	Mm.227733	NM_010166	ENSMUSG00000028886	Eya3	AI844637	EYA transcriptional coactivator and phosphatase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-130425369-1	chr2	130425269	130425469	+	566.0	f1_c57bl6.idr	promoter-TSS (NM_001114541)	promoter-TSS (NM_001114541)	-728.0	NM_001114541	319513.0	Mm.482539	NM_178762	ENSMUSG00000037773	Pced1a	A930025D01Rik|AI480484|Fam113a	PC-esterase domain containing 1A	protein-coding	-1.23751068978892	-1.21098046161303	-0.771974790519738	-1.23020267977392	-1.23706178233105	-1.20869350280629	-1.21914477819513	-1.06491627627522	-1.35556127627954	0.6852864609106	1
Merged-chr14-105897379-4	chr14	105897273	105897473	+	934.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011897)	promoter-TSS (NM_011897)	-554.0	NM_011897	24064.0	Mm.89982	NM_011897	ENSMUSG00000022114	Spry2	sprouty2	sprouty RTK signaling antagonist 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-103383062-3	chr15	103382947	103383147	+	855.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16256.0	NM_001314041	16402.0	Mm.16234	NM_010577	ENSMUSG00000000555	Itga5	Cd49e|Fnra|VLA5	integrin alpha 5 (fibronectin receptor alpha)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-60757208-1	chr13	60757108	60757308	+	647.0	f1_balb.idr	intron (NM_134062, intron 24 of 26)	intron (NM_134062, intron 24 of 26)	29156.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	1.72529628212334	1.70229983677034	2.65540998370387	2.37793087241413	2.46796194764861	3.10395496008072	2.05369112721613	2.49664121550838	0.879637942823394	0.305916015267745	0.806865344318695
Merged-chr1-150143700-4	chr1	150143599	150143799	+	937.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	21249.0	NR_110420	102639566.0	Mm.417208	NR_110420	ENSMUSG00000097754	Ptgs2os2	Gm26687|Linc-cox2|Lincrna-cox2	prostaglandin-endoperoxide synthase 2, opposite strand 2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-3743877-1	chr13	3743777	3743977	+	551.5	f0_c57.idr	Intergenic	Intergenic	60441.0	NM_027416	70405.0	Mm.20079	NM_027416	ENSMUSG00000063130	Calml3	2310068O22Rik|AI326174	calmodulin-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-44614209-3	chr17	44614102	44614302	+	960.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271627, intron 6 of 7)	intron (NM_001271627, intron 6 of 7)	121974.0	NR_073425	12393.0	Mm.391013	NM_009820	ENSMUSG00000039153	Runx2	AML3|Cbf|Cbfa-1|Cbfa1|LS3|Osf2|PEBP2aA|Pebp2a1|Pebpa2a	runt related transcription factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6408938-4	chr19	6408852	6409052	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011242, exon 12 of 17)	exon (NM_011242, exon 12 of 17)	8369.0	NM_011242	19395.0	Mm.77017	NM_011242	ENSMUSG00000032946	Rasgrp2	CDC25L|Caldaggef1	RAS, guanyl releasing protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-21393958-3	chr12	21393854	21394054	+	621.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011739, intron 4 of 4)	MTD|LTR|ERVL-MaLR	-20322.0	NM_009615	11491.0	Mm.27681	NM_009615	ENSMUSG00000052593	Adam17	CD156b|Tace	a disintegrin and metallopeptidase domain 17	protein-coding	2.72786544703917	1.77595043533121	1.50964701342453	2.8743438081773	1.60166222561378	2.40289424962527	2.19875604202323	1.47890306328774	-0.908483041763929	0.351215921436067	0.851864277369932
Merged-chr8-72294503-2	chr8	72294400	72294600	+	839.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-24562.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	2.04189489416182	2.82902744319333	1.27323602989307	2.27544047453264	1.20375158222218	2.66749317708012	2.24093251805746	2.5827064595757	0.146792913268972	0.885877572357816	0.998431161219273
Merged-chr2-68350869-4	chr2	68350762	68350962	+	968.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016866, intron 10 of 17)	intron (NM_016866, intron 10 of 17)	121119.0	NM_016866	53416.0	Mm.198414	NM_016866	ENSMUSG00000027030	Stk39	AW227544|AW556857|DCHT|RF005|Rnl5|SPAK	serine/threonine kinase 39	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59650628-4	chr15	59650534	59650734	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144549, intron 1 of 2)	intron (NM_144549, intron 1 of 2)	1980.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-80157741-2	chr5	80157641	80157841	+	719.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	-862830.0	NM_001347367	319387.0	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5509935-2	chr19	5509835	5510035	+	632.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001362042, intron 1 of 11)	intron (NM_001362042, intron 1 of 11)	582.0	NM_001362042	225861.0	Mm.20071	NM_001024560	ENSMUSG00000056185	Snx32	B930037P14Rik|Snx6b	sorting nexin 32	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-130379889-2	chr10	130379789	130379989	+	710.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14352.0	NM_001081448	625068.0	Mm.359168	NM_001081448	ENSMUSG00000070601	Vmn2r84	EG625068	vomeronasal 2, receptor 84	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-114689840-4	chr5	114689746	114689946	+	962.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019821, intron 1 of 4)	intron (NM_019821, intron 1 of 4)	1089.0	NM_019821	56356.0	Mm.275766	NM_019821	ENSMUSG00000011884	Gltp	1110001F24Rik|C76925|C77564	glycolipid transfer protein	protein-coding	1.32683362993033	2.24548130750276	1.00954042169826	2.00658757883877	1.48096485398508	1.66659942246539	1.01421756641531	2.0179570150083	-0.444547215192669	0.712140565044059	0.998431161219273
Merged-chr3-138959156-2	chr3	138959056	138959256	+	584.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001040690, exon 8 of 15)	exon (NM_001040690, exon 8 of 15)	116045.0	NM_145544	229877.0	Mm.28893	NM_145544	ENSMUSG00000028149	Rap1gds1	BC011279|GDS1	RAP1, GTP-GDP dissociation stimulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-41122520-4	chr9	41122425	41122625	+	971.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176860, intron 1 of 13)	ID4|SINE|ID	35537.0	NM_176860	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	0.256403108262424	-0.0205895541819136	-0.0273173661219289	-0.0325456331768554	-0.0399923852811122	-0.0190803584316813	0.989133543032643	0.443505937031359	2.65427012952597	0.231996334956658	1
Merged-chr4-53059578-2	chr4	53059478	53059678	+	724.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 33 of 49)	intron (NM_013454, intron 33 of 49)	47698.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-106643343-3	chr9	106643222	106643422	+	680.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12787.0	NM_001160353	108068.0	Mm.410822	NM_001160353	ENSMUSG00000023192	Grm2	4930441L02Rik|Gprc1b|mGluR2|mGluR7	glutamate receptor, metabotropic 2	protein-coding	-0.159213544773147	-0.290892374500389	0.383034627351016	-0.299004440716414	-0.304000595826568	0.218123423895797	-0.294460714450621	-0.298387000281177	-0.766387483705526	0.754387563593954	1
Merged-chr7-122383471-4	chr7	122383374	122383574	+	919.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316672, intron 2 of 16)	MTEa|LTR|ERVL-MaLR	94349.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-108722878-3	chr8	108722786	108722986	+	784.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007496, intron 1 of 9)	intron (NM_007496, intron 1 of 9)	8242.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-54220103-2	chr13	54220003	54220203	+	619.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_153432, intron 2 of 3)	intron (NR_153432, intron 2 of 3)	27970.0	NR_153432	15466.0	Mm.57243	NM_008286	ENSMUSG00000034987	Hrh2	H2R|HH2R	histamine receptor H2	protein-coding	1.27650218743816	0.381782622383655	0.372999324149626	0.948790466930552	0.519746211918598	0.383751373810014	0.374943626790731	1.06075976645799	-0.949368182803361	0.603840809320095	1
Merged-chr5-35104997-2	chr5	35104897	35105097	+	748.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_013587, intron 1 of 7)	intron (NM_013587, intron 1 of 7)	700.0	NM_013587	16976.0	Mm.277661	NM_013587	ENSMUSG00000029103	Lrpap1	AA617339|AI790446|AU042172|C77774|HBP44|RAP	low density lipoprotein receptor-related protein associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-132151143-4	chr2	132151040	132151240	+	965.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5820.0	NM_001355430	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-32208694-4	chr12	32208599	32208799	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146201)	promoter-TSS (NM_001146201)	-50.0	NM_001146200	30955.0	Mm.101369	NM_020272	ENSMUSG00000020573	Pik3cg	5830428L06Rik|PI3Kgamma|p110gamma	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96262382-4	chr3	96262299	96262499	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_033596)	TTS (NM_033596)	918.0	NM_033596	97122.0	Mm.227295	NM_033596	ENSMUSG00000091405	Hist2h4	H4|X04652	histone cluster 2, H4	protein-coding	1.87213377577023	2.21495008964156	1.53389627040123	2.37449564499747	2.09808794154126	2.23097351352598	2.0345411971717	1.84110423910629	0.0362807636492721	0.968787393876143	0.998431161219273
Merged-chr4-43429317-2	chr4	43429217	43429417	+	579.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177377)	promoter-TSS (NM_177377)	-183.0	NM_001162381	329831.0	Mm.454466	NM_177377	ENSMUSG00000042788	Fam166b	4833436C18Rik	family with sequence similarity 166, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-109025748-4	chr3	109025651	109025851	+	996.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163567, intron 1 of 10)	intron (NM_001163567, intron 1 of 10)	1856.0	NM_001163567	329739.0	Mm.69013	NM_001163567	ENSMUSG00000040339	Fam102b	1600010D10Rik|B430201A12Rik	family with sequence similarity 102, member B	protein-coding	2.4983520357711	3.12970276541969	3.11467245045411	3.02882292435371	2.51941640207967	2.82650446104741	2.10894852873752	3.46117691991676	-0.233444835953674	0.742446045085892	0.998431161219273
Merged-chr4-6209752-4	chr4	6209644	6209844	+	960.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026534, intron 6 of 7)	L3|LINE|CR1	18639.0	NM_026534	68053.0	Mm.404043	NM_026534	ENSMUSG00000028243	Ubxn2b	3110003A22Rik|6430407D20Rik|AI451665|p37	UBX domain protein 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-39637078-2	chr18	39636978	39637178	+	778.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-136419.0	NM_011033	18459.0	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-43703250-5	chr10	43703153	43703353	+	973.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13A2|LTR|ERVK	-42905.0	NR_040581	69443.0	Mm.484042	NR_040581	ENSMUSG00000111422	1700027J07Rik	-	RIKEN cDNA 1700027J07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44113604-4	chr9	44113491	44113691	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153762)	promoter-TSS (NM_153762)	-540.0	NM_153762	213211.0	Mm.392032	NM_153762	ENSMUSG00000053128	Rnf26	8030450I18Rik	ring finger protein 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-113667569-4	chr5	113667474	113667674	+	842.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17184.0	NM_008153	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-111327086-4	chr11	111326998	111327198	+	711.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	260934.0	NM_008425	16518.0	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-50571230-4	chr17	50571132	50571332	+	798.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013880, intron 1 of 5)	MTD|LTR|ERVL-MaLR	61685.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-17876858-4	chr5	17876767	17876967	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159558, intron 1 of 15)	L2|LINE|L2	12092.0	NM_001159558	12491.0	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 molecule	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-84184181-4	chr15	84184065	84184265	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054088, intron 7 of 7)	intron (NM_054088, intron 7 of 7)	-8068.0	NM_178614	68653.0	Mm.290725	NM_178614	ENSMUSG00000022437	Samm50	1110030L07Rik	SAMM50 sorting and assembly machinery component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-71701871-1	chr16	71701771	71701971	+	820.0	f1_c57bl6.idr	Intergenic	ORR1A1|LTR|ERVL-MaLR	451967.0	NR_040576	78221.0	Mm.399298	NR_040576		4930567J20Rik	-	RIKEN cDNA 4930567J20 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-84596566-2	chr2	84596466	84596666	+	575.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52914.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67205113-4	chr10	67205002	67205202	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207221, intron 3 of 25)	intron (NM_207221, intron 3 of 25)	19352.0	NM_001242396	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-3676495-4	chr8	3676421	3676621	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025701)	promoter-TSS (NM_025701)	44.0	NM_025701	66682.0	Mm.29090	NM_025701	ENSMUSG00000040236	Trappc5	4021401A16Rik|TRS31	trafficking protein particle complex 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-142499243-4	chr3	142499153	142499353	+	848.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153564, intron 1 of 10)	intron (NM_153564, intron 1 of 10)	2319.0	NM_153564	229898.0	Mm.459245	NM_153564	ENSMUSG00000105504	Gbp5	5330409J06Rik|Gbp5a	guanylate binding protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-41207960-3	chr9	41207847	41208047	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040392, intron 1 of 4)	intron (NR_040392, intron 1 of 4)	1792.0	NR_040392	78500.0	Mm.275715	NR_040392	ENSMUSG00000100837	1700063D05Rik	-	RIKEN cDNA 1700063D05 gene	ncRNA	4.33613901272322	3.49107783495561	4.1157715687631	2.92839392598591	3.78496893704938	4.58174272282841	3.04784523238604	3.71026752727278	0.0794060705630062	0.886774307518106	0.998431161219273
Merged-chr7-90047814-2	chr7	90047752	90047952	+	724.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_110364, intron 5 of 5)	intron (NR_110364, intron 5 of 5)	18693.0	NR_110364	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	3.13780174774409	2.10850807753185	2.0337646612164	3.0862261013234	2.47806948992037	3.78578526036846	2.24687570284313	3.25256628355153	0.674284367060166	0.381287509476843	0.872879327710422
Merged-chr6-38901372-4	chr6	38901277	38901477	+	960.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17609.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-13757668-4	chr8	13757560	13757760	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357247)	promoter-TSS (NM_001357247)	4.0	NM_001357247	69957.0	Mm.182412	NM_027276	ENSMUSG00000038416	Cdc16	2700071J12Rik|2810431D22Rik|APC6	CDC16 cell division cycle 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-92876232-4	chr7	92876148	92876348	+	733.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028243, intron 1 of 8)	MIRc|SINE|MIR	995.0	NM_028243	72461.0	Mm.389969	NM_028243	ENSMUSG00000061119	Prcp	2510048K03Rik|2610104A14Rik|AI451719|HUMPCP|PCP	prolylcarboxypeptidase (angiotensinase C)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16198887-1	chr7	16198787	16198987	+	874.0	f1_c57bl6.idr	exon (NM_001285931, exon 15 of 17)	exon (NM_001285931, exon 15 of 17)	23106.0	NM_001285931	71723.0	Mm.75259	NM_027883	ENSMUSG00000006019	Dhx34	1200013B07Rik|1810012L18Rik|Ddx34|mKIAA0134	DEAH (Asp-Glu-Ala-His) box polypeptide 34	protein-coding	0.318677934111785	-0.316121796939667	-0.320621291183538	-0.32409402702331	0.331322051847464	-0.315107779543456	-0.319628743977455	-0.32348726480789	0.0419906371069014	0.98733725566035	1
Merged-chr10-80164466-2	chr10	80164366	80164566	+	739.625	f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 1 of 4)	intron (NR_038088, intron 1 of 4)	-3373.0	NM_007705	12696.0	Mm.17898	NM_007705	ENSMUSG00000045193	Cirbp	Cirp|R74941	cold inducible RNA binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36238890-5	chr18	36238976	36239176	+	816.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MERVL_2A-int|LTR|ERVL	-41916.0	NM_001167891	100042150.0	Mm.380390	NM_001167891	ENSMUSG00000060275	Nrg2	Don1|NTAK	neuregulin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-106617130-3	chr7	106617020	106617220	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001277179, intron 1 of 2)	MMVL30-int|LTR|ERV1	27525.0	NM_001277179	434223.0	Mm.276443	NM_001277179		Gm1966	-	predicted gene 1966	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-56377265-3	chr10	56377156	56377356	+	987.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010288)	promoter-TSS (NM_010288)	-44.0	NM_010288	14609.0	Mm.378921	NM_010288	ENSMUSG00000050953	Gja1	AU042049|AW546267|Cnx43|Cx43|Cx43alpha1|Gja-1|Npm1|connexin43	gap junction protein, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-172357683-4	chr1	172357541	172357741	+	804.19165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039484, intron 1 of 1)	intron (NM_001039484, intron 1 of 1)	16431.0	NM_001039484	16513.0	Mm.254563	NM_020269	ENSMUSG00000044708	Kcnj10	BIR10|BIRK-1|Kir1.2|Kir4.1	potassium inwardly-rectifying channel, subfamily J, member 10	protein-coding	1.23962479282964	0.957197751718727	0.940267331250371	1.88010034573215	1.94437756373257	1.55584471383268	1.75502744517991	1.30752384501741	1.13379322442405	0.366087917547603	0.861036332257394
Merged-chr9-47528661-4	chr9	47528558	47528758	+	860.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1512.0	NM_001310841	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	-0.0213717920441781	0.46862291759726	-0.0112827892898362	0.394636239909452	-0.0204376851774684	0.477876886378908	-0.0101950047230989	0.145585136486979	-0.490512096565867	0.818951985173081	1
Merged-chr10-82908074-1	chr10	82907974	82908174	+	548.0	f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	41448.0	NM_025499	66341.0	Mm.443284	NM_025499	ENSMUSG00000109864	Eid3	1700027M21Rik|NS4EB	EP300 interacting inhibitor of differentiation 3	protein-coding	0.727191190321407	0.0525994554695507	0.0474424488767718	0.201353447442802	0.178216746764271	0.243288303831853	0.0485788887982899	0.458954552258874	-0.424086254465809	0.830904027628617	1
Merged-chr1-88582021-2	chr1	88581921	88582121	+	952.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30504.0	NR_037971	100503197.0	Mm.99352	NR_037971	ENSMUSG00000100798	Gm19589	-	predicted gene, 19589	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-97666365-3	chr3	97666258	97666458	+	822.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_182997, intron 5 of 7)	intron (NM_182997, intron 5 of 7)	8146.0	NM_182997	108097.0	Mm.31175	NM_182997	ENSMUSG00000038205	Prkab2	5730553K21Rik|AW049591|BB124140	protein kinase, AMP-activated, beta 2 non-catalytic subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-57098207-2	chr14	57098107	57098307	+	587.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_008125)	TTS (NM_008125)	6495.0	NM_008125	14619.0	Mm.390683	NM_008125	ENSMUSG00000046352	Gjb2	AI325222|Cnx26|Cx26|Gjb-2	gap junction protein, beta 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-119438354-3	chr8	119438162	119438362	+	915.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027950, intron 1 of 5)	intron (NM_027950, intron 1 of 5)	1100.0	NM_027950	71839.0	Mm.272357	NM_027950	ENSMUSG00000074063	Osgin1	1700012B18Rik|Okl38	oxidative stress induced growth inhibitor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-79474993-3	chr7	79474893	79475093	+	671.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-8720.0	NM_017462	18975.0	Mm.3616	NM_017462	ENSMUSG00000039176	Polg	AA409516|PolgA	polymerase (DNA directed), gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-67464916-4	chr18	67464805	67465005	+	906.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144867)	promoter-TSS (NM_144867)	56.0	NM_144867	225655.0	Mm.221420	NM_144867	ENSMUSG00000024530	Prelid3a	A230074A19Rik|BC019561|Slmo1	PRELI domain containing 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-20814923-2	chr18	20814823	20815023	+	809.875	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68519.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-29363802-2	chr19	29363702	29363902	+	775.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1931.0	NM_026362	67759.0	Mm.275511	NM_026362	ENSMUSG00000016495	Plgrkt	1110007H22Rik|5033414D02Rik|AI852040|Plg-R(KT)|Plg-RKT	plasminogen receptor, C-terminal lysine transmembrane protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-55509270-1	chr4	55509170	55509370	+	737.0	f1_c57bl6.idr	Intergenic	L1M3|LINE|L1	23205.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	1.07766033686721	2.11451429283625	2.35595092396735	1.70945991296696	1.08340058090721	2.4631323489877	1.77430933396975	2.20426295403854	0.204784562573315	0.855936555420695	0.998431161219273
Merged-chr5-64968998-3	chr5	64968888	64969088	+	580.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A2|LTR|ERVL-MaLR	-1087.0	NM_026667	68303.0	Mm.258545	NM_026667	ENSMUSG00000029185	Fam114a1	1190001N04Rik|9130005N14Rik|Noxp20	family with sequence similarity 114, member A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-44408373-4	chr19	44408299	44408499	+	900.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009127)	promoter-TSS (NM_009127)	-690.0	NM_009127	20249.0	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-44988063-2	chr17	44987963	44988163	+	939.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178652, intron 3 of 11)	intron (NM_178652, intron 3 of 11)	-107178.0	NM_029257	75341.0	Mm.386821	NM_029257		4930564C03Rik	-	RIKEN cDNA 4930564C03 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28314389-2	chr17	28314289	28314489	+	585.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_028296, intron 1 of 7)	PB1D9|SINE|Alu	859.0	NM_001163820	72775.0	Mm.201859	NM_028348	ENSMUSG00000007570	Fance	2810451D06Rik|AI415634|AW209126	Fanconi anemia, complementation group E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-11904528-2	chr15	11904428	11904628	+	610.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286395, intron 2 of 8)	CpG	1146.0	NM_008728	18162.0	Mm.25259	NM_008728	ENSMUSG00000022206	Npr3	ANP-C|ANPR-C|EF-2|NPR-C|lgj|stri	natriuretic peptide receptor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-24357949-2	chr2	24357849	24358049	+	645.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9726.0	NM_001355231	215632.0	Mm.490434	NM_177611	ENSMUSG00000026979	Psd4	BC046518|EFA6B	pleckstrin and Sec7 domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167418405-2	chr2	167418305	167418505	+	631.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3305.0	NM_148929	77031.0	Mm.278924	NM_148929	ENSMUSG00000039463	Slc9a8	1200006P13Rik|6430709P13Rik|AI182282|NHE-8|NHE8	solute carrier family 9 (sodium/hydrogen exchanger), member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46521050-2	chr19	46520950	46521150	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	19402.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-4756577-4	chr13	4756480	4756680	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(A)n|Simple_repeat|Simple_repeat	-147416.0	NM_018859	56043.0	Mm.251908	NM_018859	ENSMUSG00000045410	Akr1e1	1810061I10Rik|Akr1e2	aldo-keto reductase family 1, member E1	protein-coding	5.05553582080298	4.67621613270234	4.6307094241695	5.07490348725436	5.22523488501159	4.96211627269704	5.56256168332136	5.70098527561615	0.603241524906754	0.0571044000276623	0.353483557798245
Merged-chr14-32083793-2	chr14	32083693	32083893	+	808.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001047433, intron 1 of 1)	B3|SINE|B2	1493.0	NR_104305	105638.0	Mm.2519	NM_172254	ENSMUSG00000021905	Dph3	DELGIP1|DelgipP1|Desr1|KTI11|Zcsl2	diphthamine biosynthesis 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-156181416-2	chr4	156181316	156181516	+	586.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021604, intron 3 of 35)	intron (NM_021604, intron 3 of 35)	16072.0	NM_021604	11603.0	Mm.273098	NM_021604	ENSMUSG00000041936	Agrn	Agrin|nmf380	agrin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120120758-2	chr8	120120658	120120858	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172286, intron 1 of 12)	RLTR31D_MM|LTR|ERVK	6606.0	NM_001163761	234797.0	Mm.101958	NM_172286	ENSMUSG00000031824	6430548M08Rik	AW049007|Kiaa0513|mKIAA0513	RIKEN cDNA 6430548M08 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-44686850-4	chr10	44686764	44686964	+	881.508301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-228116.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122428362-3	chr8	122428228	122428428	+	729.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301284, intron 1 of 4)	intron (NM_001301284, intron 1 of 4)	4612.0	NM_001301284	13057.0	Mm.271671	NM_007806	ENSMUSG00000006519	Cyba	b558|nmf333|p22-phox|p22phox	cytochrome b-245, alpha polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94828383-6	chr10	94828305	94828505	+	892.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018797, intron 20 of 30)	intron (NM_018797, intron 20 of 30)	116173.0	NM_018797	54712.0	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-120068335-3	chr9	120068282	120068482	+	992.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009987)	promoter-TSS (NM_009987)	-86.0	NM_009987	13051.0	Mm.44065	NM_009987	ENSMUSG00000052336	Cx3cr1	-	chemokine (C-X3-C motif) receptor 1	protein-coding	2.0119655341964	0.873374276838243	0.852674288776393	1.06681100763741	1.59298616716324	1.6889873399743	2.30756210137896	0.839109474128668	1.17520505705212	0.386822875825215	0.876517644221684
Merged-chr11-106085216-8	chr11	106085113	106085313	+	998.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011947, intron 1 of 15)	CpG	311.0	NM_011947	26406.0	Mm.27041	NM_011947	ENSMUSG00000020700	Map3k3	AW548911|MAPKKK3|Mekk3|mKIAA4031	mitogen-activated protein kinase kinase kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-100731970-4	chr9	100731834	100732034	+	740.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009282, intron 3 of 33)	MTC|LTR|ERVL-MaLR	88486.0	NM_001357265	20842.0	Mm.42135	NM_009282	ENSMUSG00000037286	Stag1	AU045003|SA-1|Scc3	stromal antigen 1	protein-coding	-1.39239040096365	-1.50706362993767	-1.51637061241093	-1.52401564492204	-1.25712099376264	-1.5050467680107	-1.51426371558223	-1.52264718775774	0.640753741356348	0.855918148133186	1
Merged-chr5-130027777-2	chr5	130027677	130027877	+	699.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1529.0	NM_007761	12909.0	Mm.18072	NM_007761	ENSMUSG00000025532	Crcp	AL022669	calcitonin gene-related peptide-receptor component protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-121928573-3	chr14	121928469	121928669	+	703.5	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	intron (NM_026861, intron 4 of 8)	intron (NM_026861, intron 4 of 8)	-12795.0	NM_182806	110168.0	Mm.37405	NM_182806	ENSMUSG00000050350	Gpr18	-	G protein-coupled receptor 18	protein-coding	3.04226849603906	2.59805303246127	2.91069412987608	3.73013146913509	1.75484802529108	3.25584398616778	3.85907175126054	3.13968970167706	0.0891826991359948	0.901495841019762	0.998431161219273
Merged-chr4-105110275-2	chr4	105110175	105110375	+	601.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178143)	promoter-TSS (NM_178143)	-377.0	NM_001356568	108079.0	Mm.48638	NM_178143	ENSMUSG00000028518	Prkaa2	2310008I11Rik|A830082D05|AMPKalpha2	protein kinase, AMP-activated, alpha 2 catalytic subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-110697620-2	chr11	110697520	110697720	+	819.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	218280.0	NM_001356346	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71489135-2	chr8	71489026	71489226	+	783.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_032544, exon 2 of 9)	exon (NM_032544, exon 2 of 9)	1023.0	NM_032544	70359.0	Mm.142112	NM_032544	ENSMUSG00000007610	Gtpbp3	2410009F13Rik|AI607903	GTP binding protein 3	protein-coding	-0.123508770712759	-0.102076480044307	0.840382412569604	-0.1144255693568	-0.122148964810011	-0.100522071961679	-0.107480338248923	0.705935829053256	-0.327975733350891	0.890680172420476	1
Merged-chr19-46398424-2	chr19	46398324	46398524	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025391, intron 1 of 11)	intron (NM_001025391, intron 1 of 11)	1528.0	NM_015752	24069.0	Mm.41210	NM_015752	ENSMUSG00000025231	Sufu	Su(fu)	SUFU negative regulator of hedgehog signaling	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-29653839-1	chr9	29653739	29653939	+	544.0	f1_c57bl6.idr	intron (NM_001357593, intron 1 of 9)	intron (NM_001357593, intron 1 of 9)	-240387.0	NM_001357603	235106.0	Mm.283138	NM_172290	ENSMUSG00000059974	Ntm	6230410L23Rik|B230210G24Rik|Hnt|Igdcc2|R75390	neurotrimin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97686817-1	chr11	97686717	97686917	+	797.5	f1_c57bl6.idr	intron (NM_001085500, intron 2 of 2)	intron (NM_001085500, intron 2 of 2)	865.0	NM_001085500	217149.0	Mm.29659	NM_001085500	ENSMUSG00000078695	Cisd3	Mel-13|Mel13	CDGSH iron sulfur domain 3	protein-coding	0.847003075065556	1.63408128855503	0.266215177258654	0.257151182376323	0.244054798369325	0.280290193113501	0.268776877212781	0.937147468846412	-1.93249410790588	0.310279399592903	0.811052774796438
Merged-chr15-79003730-2	chr15	79003630	79003830	+	694.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_138579, exon 22 of 24)	exon (NM_138579, exon 22 of 24)	1507.0	NR_105921	102465577.0		NR_105921	ENSMUSG00000099180	Mir6956	Gm27880|mmu-mir-6956	microRNA 6956	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-88399982-4	chr5	88399900	88400100	+	957.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23892.0	NM_027793	71421.0	Mm.79700	NM_027793	ENSMUSG00000029282	Amtn	5430427O21Rik	amelotin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78248614-4	chr15	78248524	78248724	+	997.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008677, intron 1 of 9)	intron (NM_008677, intron 1 of 9)	3813.0	NM_008677	17972.0	Mm.2068	NM_008677	ENSMUSG00000071715	Ncf4	AI451400|p40phox	neutrophil cytosolic factor 4	protein-coding	2.67072045846843	3.17403764970258	1.74546108370803	2.6220635126531	2.77639702717074	1.52999308975655	3.09211800478721	2.99784279224455	0.157288598810064	0.852007642499116	0.998431161219273
Merged-chr6-97804631-4	chr6	97804537	97804737	+	833.145813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2421.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-97821070-4	chr15	97820978	97821178	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001204280, intron 1 of 21)	URR1B|DNA|hAT-Charlie	-6215.0	NM_001204281	56233.0	Mm.384027	NM_019572	ENSMUSG00000022475	Hdac7	5830434K02Rik|HD7|HD7a|Hdac7a|mFLJ00062	histone deacetylase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-64052182-4	chr1	64052078	64052278	+	884.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033563, intron 2 of 3)	intron (NM_033563, intron 2 of 3)	-9677.0	NR_105864	102466760.0		NR_105864	ENSMUSG00000098487	Mir6899	Gm27384|mmu-mir-6899	microRNA 6899	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-123904943-4	chr4	123904842	123905042	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019660)	promoter-TSS (NM_019660)	-71.0	NM_019660	56309.0	Mm.446553	NM_019660	ENSMUSG00000028647	Mycbp	5730488M09Rik|AW552132|AW742590|Amy-1	MYC binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-75245010-4	chr1	75244885	75245085	+	878.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001159885, exon 9 of 9)	3' UTR (NM_001159885, exon 9 of 9)	8283.0	NM_001159885	56812.0	Mm.489660	NM_020266	ENSMUSG00000026203	Dnajb2	2700059H22Rik|Dnajb10|Hsj1|mDj8	DnaJ heat shock protein family (Hsp40) member B2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-28606872-4	chr13	28606745	28606945	+	863.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045054, intron 6 of 7)	L1MB7|LINE|L1	104028.0	NR_105787	102466635.0		NR_105787	ENSMUSG00000099158	Mir6368	Gm27800|mmu-mir-6368	microRNA 6368	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-52451838-3	chr16	52451722	52451922	+	703.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009655, intron 1 of 15)	intron (NM_009655, intron 1 of 15)	1259.0	NM_009655	11658.0	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117111263-2	chr11	117111163	117111363	+	659.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-3909.0	NR_029459	74136.0	Mm.272312	NM_028777	ENSMUSG00000020823	Sec14l1	1200017E04Rik|2810012L19Rik|Naa-35	SEC14-like lipid binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69814230-2	chr11	69814130	69814330	+	563.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4210.0	NM_175368	108803.0	Mm.73263	NM_175368	ENSMUSG00000044084	Spem2	4933402P03Rik	SPEM family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-5417853-4	chr2	5417746	5417946	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030601, intron 1 of 1)	intron (NR_030601, intron 1 of 1)	38456.0	NR_030601	100124465.0		NR_030601	ENSMUSG00000078031	Mir466d	Mirn466d	microRNA 466d	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-91210625-3	chr10	91210574	91210774	+	556.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151510, intron 3 of 3)	intron (NR_151510, intron 3 of 3)	9945.0	NR_151510	102633753.0	Mm.416936	NR_151510		4930534H03Rik	-	RIKEN cDNA 4930534H03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-54920549-2	chr18	54920449	54920649	+	778.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360787, intron 2 of 8)	intron (NM_001360787, intron 2 of 8)	69631.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-125447804-3	chr1	125447686	125447886	+	883.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12059.0	NM_001205385	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-43882996-2	chr7	43882896	43883096	+	600.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019928, intron 2 of 5)	intron (NM_019928, intron 2 of 5)	1824.0	NM_019928	56640.0	Mm.42080	NM_019928	ENSMUSG00000006948	Klk4	ESMP1|KLK-L1|PSTS|Prss17	kallikrein related-peptidase 4 (prostase, enamel matrix, prostate)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-34885000-4	chr18	34884860	34885060	+	943.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23753.0	NM_007913	13653.0	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-35293739-2	chr15	35293639	35293839	+	897.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2373.0	NM_054049	107587.0	Mm.46336	NM_054049	ENSMUSG00000022330	Osr2	5430409I15Rik|Osr2A|Osr2B	odd-skipped related 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-30065315-4	chr16	30065239	30065439	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008235)	promoter-TSS (NM_008235)	-18.0	NM_008235	15205.0	Mm.390859	NM_008235	ENSMUSG00000022528	Hes1	Hry|bHLHb39	hes family bHLH transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21003458-3	chr9	21003373	21003573	+	988.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357899, intron 3 of 8)	intron (NM_001357899, intron 3 of 8)	736.0	NM_001357899	66163.0	Mm.427576	NM_023167	ENSMUSG00000003299	Mrpl4	1110017G11Rik	mitochondrial ribosomal protein L4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70975091-2	chr11	70974991	70975191	+	827.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252415, intron 6 of 6)	intron (NM_001252415, intron 6 of 6)	4891.0	NM_001252415	69723.0	Mm.275691	NM_027186	ENSMUSG00000018449	Rpain	2400006N03Rik|Rip	RPA interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-172505943-2	chr1	172505843	172506043	+	903.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178598, intron 3 of 4)	intron (NM_178598, intron 3 of 4)	5697.0	NM_178598	21346.0	Mm.271711	NM_178598	ENSMUSG00000026547	Tagln2	2700094C18Rik|SM22beta|Sm22B|Sm22a	transgelin 2	protein-coding	-0.336561499519729	-0.321786373933211	0.371796777073729	0.326608517840189	-0.335635407964054	-0.320700217747318	-0.325547248855099	-0.329693214039222	-3.75013372382206	0.14171742686148	1
Merged-chr13-107754760-2	chr13	107754660	107754860	+	955.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 5 of 14)	ORR1D2|LTR|ERVL-MaLR	67363.0	NR_045900	72257.0	Mm.234155	NR_045900	ENSMUSG00000102000	1700006H21Rik	-	RIKEN cDNA 1700006H21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-14841692-2	chr9	14841592	14841792	+	548.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	-18518.0	NM_001310734	14608.0	Mm.4672	NM_010287	ENSMUSG00000031932	Gpr83	AW045253|Gir|Gpr72|RP105|RP39|RP82	G protein-coupled receptor 83	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-143087270-2	chr7	143087171	143087371	+	732.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_020277, intron 4 of 24)	intron (NM_020277, intron 4 of 24)	7371.0	NM_020277	56843.0	Mm.286668	NM_020277	ENSMUSG00000009246	Trpm5	9430099A16Rik|LTrpC-5|Ltrpc5|Mtr1	transient receptor potential cation channel, subfamily M, member 5	protein-coding	1.4344098143283	1.61811270146794	0.922079238982753	1.51388616781298	1.44649291128687	1.63098931371059	0.925192675069776	1.52202816774718	0.0366479618916858	0.977085948680712	0.998431161219273
Merged-chr5-24827351-4	chr5	24827256	24827456	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053075, intron 1 of 7)	intron (NM_053075, intron 1 of 7)	15005.0	NM_053075	19744.0	Mm.319175	NM_053075	ENSMUSG00000028945	Rheb	Rheb1	Ras homolog enriched in brain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-166146862-4	chr1	166146767	166146967	+	904.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021610, intron 2 of 6)	intron (NM_021610, intron 2 of 6)	16646.0	NM_001360925	59290.0	Mm.46357	NM_021610	ENSMUSG00000000544	Gpa33	2010310L10Rik|2210401D16Rik|BB116197|mA33	glycoprotein A33 (transmembrane)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-64654018-1	chr14	64653918	64654118	+	656.0	f0_balb.idr	intron (NM_001081177, intron 1 of 39)	intron (NM_001081177, intron 1 of 39)	1487.0	NM_001081177	16554.0	Mm.23611	NM_001081177	ENSMUSG00000060012	Kif13b	5330429L19Rik|6030414C01|AI429803|C130021D12Rik|GAKIN	kinesin family member 13B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-38992366-2	chr18	38992266	38992466	+	988.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175164)	promoter-TSS (NM_175164)	-779.0	NM_001361073	71302.0	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-31565303-4	chr15	31565202	31565402	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3531.0	NM_181588	69574.0	Mm.28108	NM_181588	ENSMUSG00000022235	Cmbl	2310016A09Rik	carboxymethylenebutenolidase-like (Pseudomonas)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-26490825-2	chr2	26490725	26490925	+	670.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008714, intron 2 of 33)	intron (NM_008714, intron 2 of 33)	12997.0	NM_008714	18128.0	Mm.290610	NM_008714	ENSMUSG00000026923	Notch1	9930111A19Rik|Mis6|N1|Tan1|lin-12	notch 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-79965893-2	chr10	79965793	79965993	+	758.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175450, intron 4 of 9)	intron (NM_175450, intron 4 of 9)	-4831.0	NM_130455	170483.0	Mm.391566	NM_130455	ENSMUSG00000035745	Grin3b	GluN3B|NR3B	glutamate receptor, ionotropic, NMDA3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-100643473-3	chr5	100643366	100643566	+	674.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30790.0	NM_027978	71883.0	Mm.260661	NM_027978	ENSMUSG00000029319	Coq2	2310002F18Rik|PHB:PPT	coenzyme Q2 4-hydroxybenzoate polyprenyltransferase	protein-coding	-0.999004873958601	-1.11947659419295	-1.13046989609953	-0.605296720201681	-1.1420649015184	-1.11709429981014	-1.1279812535142	-1.13788371555445	-2.63305150711585	0.415139208447062	1
Merged-chr13-55418259-4	chr13	55418158	55418358	+	999.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_021489, exon 14 of 14)	exon (NM_021489, exon 14 of 14)	-3026.0	NM_029303	75477.0	Mm.432537	NM_029303	ENSMUSG00000044444	Pfn3	1700012P12Rik	profilin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-92423594-4	chr16	92423493	92423693	+	902.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081549, intron 1 of 3)	intron (NM_001081549, intron 1 of 3)	-23515.0	NM_019466	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84205713-2	chr8	84205637	84205837	+	575.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-2781.0	NR_029740	387216.0		NR_029740	ENSMUSG00000065611	Mir23a	Mirn23a|mir-23a|mmu-mir-23a	microRNA 23a	ncRNA	2.82155927591517	2.60651398185573	2.26632454249898	2.55545548086718	2.34631036257611	2.93439342340304	2.41881382911029	1.69627693777551	-0.335300503986923	0.67751525174139	0.994818437932722
Merged-chr14-25378194-5	chr14	25378163	25378363	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-80922.0	NM_001310666	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-29001243-3	chr7	29001156	29001356	+	788.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355054, intron 28 of 31)	intron (NM_001355054, intron 28 of 31)	18402.0	NM_008279	26411.0	Mm.148278	NM_008279	ENSMUSG00000037337	Map4k1	Hpk1|mHPK1	mitogen-activated protein kinase kinase kinase kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-7225545-2	chr19	7225445	7225645	+	704.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_027643)	TTS (NM_027643)	-7929.0	NM_007750	12868.0	Mm.14022	NM_007750	ENSMUSG00000035885	Cox8a	COX8L	cytochrome c oxidase subunit VIIIa	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-34010008-1	chr11	34009908	34010108	+	1000.0	f0_balb.idr	intron (NR_155520, intron 4 of 4)	intron (NR_155520, intron 4 of 4)	-16815.0	NM_001190886	70357.0	Mm.252514	NM_027398	ENSMUSG00000053519	Kcnip1	KCHIP1|Kchip1.2	Kv channel-interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-107748164-3	chr7	107748058	107748258	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001205227)	TTS (NM_001205227)	9874.0	NM_001205227	320635.0	Mm.132828	NM_177216	ENSMUSG00000048065	Cyb5r2	D630003K02Rik|b5R.2	cytochrome b5 reductase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-80023548-2	chr2	80023448	80023648	+	676.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355141, intron 2 of 15)	intron (NM_001355141, intron 2 of 15)	15354.0	NM_001355142	18573.0	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-144568965-4	chr3	144568882	144569082	+	923.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355234, intron 1 of 6)	intron (NM_001355234, intron 1 of 6)	1234.0	NM_011828	23908.0	Mm.12863	NM_011828	ENSMUSG00000040151	Hs2st1	2OST|AW214369|Hs2st|mKIAA0448	heparan sulfate 2-O-sulfotransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-8953752-4	chr19	8953649	8953849	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_197993)	promoter-TSS (NM_197993)	-83.0	NM_197993	70044.0	Mm.165979	NM_197993	ENSMUSG00000071645	Tut1	2700038E08Rik|PAPD2|Rbm21|TUTase6|U6-TUTase|star-PAP	terminal uridylyl transferase 1, U6 snRNA-specific	protein-coding	4.24084125834348	3.86977290706175	4.27218877357364	4.21258636243207	4.69938244676907	3.61783113827972	3.99622067707324	3.87639408882141	-0.0453732953984158	0.91954680516767	0.998431161219273
Merged-chr4-133153831-3	chr4	133153722	133153922	+	791.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153423, intron 1 of 8)	intron (NM_153423, intron 1 of 8)	23189.0	NM_153423	242687.0	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	1.98999529011976	3.97618811986103	2.38415771200652	3.69066400758143	3.41554503606785	3.21740998304473	3.10740919565199	3.76645694822132	0.210485123276507	0.759037969278891	0.998431161219273
Merged-chr5-120165240-4	chr5	120165126	120165326	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028762, intron 21 of 23)	intron (NM_028762, intron 21 of 23)	-25963.0	NR_045793	100503427.0	Mm.446834	NR_045793	ENSMUSG00000097368	Gm10390	-	predicted gene 10390	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44545197-2	chr9	44545097	44545297	+	687.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18776.0	NM_007551	12145.0	Mm.6246	NM_007551	ENSMUSG00000047880	Cxcr5	Blr1|CXC-R5|CXCR-5|Gpcr6|MDR15	chemokine (C-X-C motif) receptor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-13000034-2	chr8	12999934	13000134	+	596.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_178076, exon 9 of 31)	exon (NM_178076, exon 9 of 31)	-26000.0	NM_010172	14068.0	Mm.4827	NM_010172	ENSMUSG00000031443	F7	AI132620|Cf7|FVII	coagulation factor VII	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-12589102-4	chr16	12588995	12589195	+	836.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-222295.0	NR_040507	75493.0	Mm.396146	NR_040507	ENSMUSG00000101565	1700003L19Rik	-	RIKEN cDNA 1700003L19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-60172109-2	chr2	60172009	60172209	+	806.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-37827.0	NM_020575	57438.0	Mm.260635	NM_020575	ENSMUSG00000026977	March7	Axo|Axot|Gtrgeo17	membrane-associated ring finger (C3HC4) 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-69196958-4	chr18	69196850	69197050	+	924.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-147542.0	NM_013685	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	0.743241089731541	1.83450521914194	0.783183018749617	1.7968190252945	1.50842018391208	0.805820797134	0.787319523966283	2.05622754099557	0.0244891112046508	0.986926622450553	0.998431161219273
Merged-chr11-79161301-4	chr11	79161300	79161500	+	889.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A|LTR|ERVL-MaLR	-14927.0	NM_013571	16706.0	Mm.4745	NM_013571	ENSMUSG00000018334	Ksr1	AW492498|B-KSR1|D11Bhm183e|D11Bhm184e|Ksr|RSU2|hb|mKSR1	kinase suppressor of ras 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-77806943-4	chr9	77806843	77807043	+	977.2291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52408.0	NM_010295	14629.0	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	4.83170447036372	5.23826940456103	4.03161730517315	4.95959442419794	4.95906840839551	5.16226726276461	4.06408225260009	5.28857554954973	0.137276466970686	0.724071388184214	0.998431161219273
Merged-chr7-19165184-2	chr7	19165084	19165284	+	654.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080815, intron 1 of 13)	intron (NM_001080815, intron 1 of 13)	943.0	NM_001080815	381853.0	Mm.333633	NM_001080815	ENSMUSG00000030406	Gipr	GIP-R|Gm1081|Gm160	gastric inhibitory polypeptide receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-120225515-2	chr4	120225465	120225665	+	597.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61696.0	NM_194060	329934.0	Mm.277090	NM_194060	ENSMUSG00000052135	Foxo6	-	forkhead box O6	protein-coding	0.410394020757139	0.903560155791792	0.139614315711785	0.13426865485787	0.283674582426961	0.148057580035007	0.858153412267532	0.135204248517051	-0.261060774475364	0.895523861648834	1
Merged-chr1-151948156-3	chr1	151948017	151948217	+	887.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197990, intron 3 of 5)	intron (NM_197990, intron 3 of 5)	142203.0	NM_197990	69399.0	Mm.278031	NM_197990	ENSMUSG00000032666	1700025G04Rik	2610510E02Rik|2900042O04Rik	RIKEN cDNA 1700025G04 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-24752184-4	chr5	24752060	24752260	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153076, intron 3 of 3)	(AGGGGG)n|Simple_repeat|Simple_repeat	5683.0	NM_153076	214301.0	Mm.63484	NM_153076	ENSMUSG00000038135	Crygn	-	crystallin, gamma N	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21864653-1	chr9	21864553	21864753	+	777.5	f0_balb.idr	Intergenic	RSINE1|SINE|B4	-12018.0	NM_177030	319899.0	Mm.128153	NM_177030	ENSMUSG00000032198	Dock6	2410095B20Rik|4931431C02Rik|C330023D02Rik|mKIAA1395	dedicator of cytokinesis 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-11388237-2	chr16	11388137	11388337	+	603.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028964, intron 4 of 20)	intron (NM_028964, intron 4 of 20)	-17411.0	NM_001290148	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-60229506-2	chr11	60229406	60229606	+	725.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001039092, exon 14 of 14)	3' UTR (NM_001039092, exon 14 of 14)	-6925.0	NM_001358315	20787.0	Mm.278701	NM_011480	ENSMUSG00000020538	Srebf1	ADD1|SREBP1|bHLHd1	sterol regulatory element binding transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120133735-2	chr8	120133635	120133835	+	568.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172286, intron 1 of 12)	intron (NM_172286, intron 1 of 12)	-11194.0	NM_001163760	234797.0	Mm.101958	NM_172286	ENSMUSG00000031824	6430548M08Rik	AW049007|Kiaa0513|mKIAA0513	RIKEN cDNA 6430548M08 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-127080463-2	chr2	127080363	127080563	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026678, intron 1 of 7)	RMER15|LTR|ERVL	9806.0	NM_026678	109778.0	Mm.22028	NM_026678	ENSMUSG00000001999	Blvra	0610006A11Rik|2500001N03Rik|Blvr	biliverdin reductase A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-122347617-3	chr7	122347504	122347704	+	690.549988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316672, intron 2 of 16)	intron (NM_001316672, intron 2 of 16)	58479.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-76268311-4	chr6	76268209	76268409	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-974168.0	NR_155299	74342.0	Mm.292568	NM_028880	ENSMUSG00000060780	Lrrtm1	4632401D06Rik|AW125451	leucine rich repeat transmembrane neuronal 1	protein-coding	4.41726373759017	1.79883482786098	3.63687067096513	3.67728862952706	4.28336401785751	3.32052668196026	2.81846361010877	3.88441045735547	0.0305341527341979	0.963940977544475	0.998431161219273
Merged-chr9-37236095-4	chr9	37236016	37236216	+	908.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145960, intron 10 of 18)	intron (NM_001145960, intron 10 of 18)	19622.0	NM_020258	56857.0	Mm.440037	NM_020258	ENSMUSG00000032122	Slc37a2	G3PP|Slc37a1|cI-2|ci2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	protein-coding	2.82851520673104	3.07114873309884	3.19896359810388	3.30151305883635	3.7141523681701	4.13706788066621	3.51577172772948	4.43806709089417	1.34800153058174	0.0115667527437098	0.120536681603096
Merged-chr16-36665980-4	chr16	36665888	36666088	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019388)	promoter-TSS (NM_019388)	89.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-149856932-4	chr1	149856835	149857035	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008869, intron 14 of 17)	intron (NM_008869, intron 14 of 17)	65504.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80063069-2	chr10	80062969	80063169	+	689.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359635, intron 17 of 31)	intron (NM_001359635, intron 17 of 31)	9050.0	NM_001037741	625249.0	Mm.332810	NM_008162	ENSMUSG00000075706	Gpx4	GPx-4|GSHPx-4|PHGPx|mtPHGPx|snGPx	glutathione peroxidase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120740738-3	chr8	120740594	120740794	+	795.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301811, intron 2 of 8)	intron (NM_001301811, intron 2 of 8)	2055.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-41373041-4	chr13	41372917	41373117	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111324, intron 2 of 7)	intron (NM_001111324, intron 2 of 7)	-14016.0	NM_017464	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4061329-4	chr19	4061187	4061387	+	977.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1840.0	NM_001362043	225884.0	Mm.440201	NM_144869	ENSMUSG00000058216	Gstp3	-	glutathione S-transferase pi 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19023068-1	chr7	19022968	19023168	+	701.0	f1_c57bl6.idr	intron (NM_008260, intron 1 of 1)	intron (NM_008260, intron 1 of 1)	471.0	NM_008260	15377.0	Mm.42260	NM_008260	ENSMUSG00000040891	Foxa3	Hnf-3g|Hnf3g|Tcf-3g|Tcf3g	forkhead box A3	protein-coding	0.472270193139315	0.216103725121035	0.898509700076749	0.204014493928368	0.479278925272488	0.217636272320359	0.911371819920166	0.204937226821638	0.0411287735561777	0.983154397678502	1
Merged-chr4-70578462-4	chr4	70578364	70578564	+	815.854187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14-int|LTR|ERV1	-43536.0	NM_172694	230316.0	Mm.251188	NM_172694	ENSMUSG00000039270	Megf9	4933405H16Rik|9630025C07|Egfl5|mKIAA0818	multiple EGF-like-domains 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134202378-2	chr6	134202278	134202478	+	635.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 3 of 8)	intron (NM_001303102, intron 3 of 8)	166678.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-7029110-1	chr18	7029010	7029210	+	554.0	f1_c57bl6.idr	Intergenic	L1Md_F|LINE|L1	-24331.0	NM_177595	210719.0	Mm.257186	NM_177595	ENSMUSG00000061013	Mkx	9430023B20Rik|Irxl1	mohawk homeobox	protein-coding	-1.32440223303897	-1.29339468673833	-0.717877708899544	-1.31276353204239	-1.32392690786997	-1.29109028300231	-1.30162128075409	-1.31119997543009	-2.49510383040271	0.470258445164311	1
Merged-chr4-132586331-2	chr4	132586231	132586431	+	758.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22264.0	NM_001081211	19204.0	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-60220555-4	chr11	60220425	60220625	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011480, exon 1 of 19)	exon (NM_011480, exon 1 of 19)	102.0	NM_011480	20787.0	Mm.278701	NM_011480	ENSMUSG00000020538	Srebf1	ADD1|SREBP1|bHLHd1	sterol regulatory element binding transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-59450554-3	chr11	59450467	59450667	+	821.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356452)	promoter-TSS (NM_001356452)	522.0	NM_001205068	194952.0	Mm.295954	NM_178659	ENSMUSG00000036819	Jmjd4	6430559I23	jumonji domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-106035123-2	chr1	106035023	106035223	+	588.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44717.0	NM_001122675	227449.0	Mm.210188	NM_001122675	ENSMUSG00000038866	Zcchc2	9930114B20Rik|AW212015	zinc finger, CCHC domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-136462774-7	chr4	136462661	136462861	+	832.071411	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-7000.0	NM_024452	269593.0	Mm.485824	NM_024452	ENSMUSG00000001089	Luzp1	2700072H04Rik|AI266952|Luzp|mFLJ00226	leucine zipper protein 1	protein-coding	1.99682612043723	1.15153704326363	1.38187571138854	2.82071867644066	2.511204300969	1.66359856501211	1.12835122193649	2.32860655499848	-0.00201643266237841	0.998583832739396	0.999479715059607
Merged-chr5-36465008-4	chr5	36464922	36465122	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024478)	promoter-TSS (NM_024478)	-163.0	NM_024478	17713.0	Mm.21535	NM_024478	ENSMUSG00000029198	Grpel1	AA408748|mt-GrpE#1|mt-Grpel1	GrpE-like 1, mitochondrial	protein-coding	3.51596024075862	3.7808927226924	4.32811710553222	3.47057427660798	3.54514283852743	3.80815256322824	4.35859199170391	3.48865687252639	0.0384497792439121	0.939244048497365	0.998431161219273
Merged-chr9-110625010-4	chr9	110624893	110625093	+	776.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026012)	promoter-TSS (NM_026012)	-600.0	NM_026012	67169.0	Mm.46680	NM_026012	ENSMUSG00000032491	Nradd	2610311B09Rik|BB104149|NRDD|NRH2|PLAIDD	neurotrophin receptor associated death domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-95467358-1	chr14	95467258	95467458	+	605.0	f1_balb.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-413896.0	NM_001358241	66732.0	Mm.75060	NM_025733	ENSMUSG00000034689	4921530L21Rik	-	RIKEN cDNA 4921530L21 gene	protein-coding	1.80712361384261	1.19401851793843	1.16281405074202	2.15940493889527	1.68254870229012	2.20266818473897	2.35550795515052	2.99452752698843	1.82811312267219	0.0797661022346457	0.429548336899138
Merged-chr17-21532236-4	chr17	21532095	21532295	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131123, intron 2 of 2)	intron (NR_131123, intron 2 of 2)	-3344.0	NM_144515	22710.0	Mm.296100	NM_144515	ENSMUSG00000051341	Zfp52	KRAB11|Zfp-52|Zfp76|mszf23-2|mszf24|mszf34|mszf75|zfec29	zinc finger protein 52	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94927059-2	chr10	94926959	94927159	+	747.099976	f1_balb.idr|f1_c57bl6.idr	intron (NM_018797, intron 1 of 30)	intron (NM_018797, intron 1 of 30)	17519.0	NM_018797	54712.0	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101328117-2	chr15	101328017	101328217	+	627.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34905.0	NR_033803	77717.0	Mm.391998	NR_033803	ENSMUSG00000075408	6030408B16Rik	AI225877	RIKEN cDNA 6030408B16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-45053819-2	chr2	45053719	45053919	+	854.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355291, intron 2 of 9)	intron (NM_001355291, intron 2 of 9)	-30642.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64809522-4	chr5	64809443	64809643	+	944.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008453, intron 1 of 5)	intron (NM_008453, intron 1 of 5)	6020.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-115602494-3	chr6	115602395	115602595	+	787.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023290, intron 1 of 7)	intron (NM_023290, intron 1 of 7)	557.0	NM_023290	67027.0	Mm.101316	NM_023290	ENSMUSG00000000439	Mkrn2	2610002L04Rik|C81377	makorin, ring finger protein, 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-67451113-4	chr5	67450980	67451180	+	876.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-12818.0	NR_110363	320479.0	Mm.387187	NR_015582	ENSMUSG00000107385	C330024D21Rik	-	RIKEN cDNA C330024D21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-14641930-3	chr19	14641828	14642028	+	890.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43745.0	NM_001302947	21888.0	Mm.103638	NM_011600	ENSMUSG00000024642	Tle4	5730411M05Rik|AA792082|Bce-1|Bce1|ESTM13|ESTM14|Grg4|X83332|X83333|grg-4	transducin-like enhancer of split 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-41949368-4	chr18	41949263	41949463	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029942, intron 1 of 6)	MTD|LTR|ERVL-MaLR	1831.0	NM_029942	77619.0	Mm.30649	NM_029942	ENSMUSG00000056671	Prelid2	1700003A01Rik|C330008K14Rik	PRELI domain containing 2	protein-coding	-0.539072095141396	-1.17607782048307	-1.18720726126045	-1.19634931528472	-1.20196491063698	-1.17366602423904	-1.18468779981884	-1.19471289198531	-2.68787187143179	0.435473844436726	1
Merged-chr4-129049216-4	chr4	129049106	129049306	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-9065.0	NM_029219	75234.0	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-122301521-4	chr3	122301431	122301631	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID2|SINE|ID	-7828.0	NR_030439	791077.0		NR_030439	ENSMUSG00000076456	Mir760	Mirn760|mir-760|mmu-mir-760	microRNA 760	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-64198508-4	chr1	64198415	64198615	+	824.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-77126.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-31173601-2	chr2	31173501	31173701	+	636.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178760, intron 5 of 17)	B2_Mm2|SINE|B2	21285.0	NM_178760	277463.0	Mm.236074	NM_178760	ENSMUSG00000000194	Gpr107	9930033D15Rik|AI790205|C530034M11|mKIAA1624	G protein-coupled receptor 107	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-46754388-3	chr17	46754276	46754476	+	885.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	-2162.0	NM_001305988	72029.0	Mm.240325	NM_028065	ENSMUSG00000023973	Cnpy3	1600025D17Rik|2410050O22Rik|AI413153|CAG4A|ERDA5|PRAT4A|Tnrc5	canopy FGF signaling regulator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-38565075-4	chr3	38564977	38565177	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	-80261.0	NM_001167883	99696.0	Mm.290937	NM_001033198	ENSMUSG00000044864	Ankrd50	AI662170|E430012K20Rik|mKIAA1223|mKIAA3019	ankyrin repeat domain 50	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-23058970-2	chr8	23058870	23059070	+	634.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_102385, intron 1 of 45)	intron (NR_102385, intron 1 of 45)	711.0	NR_102385	11733.0	Mm.334444	NM_031158	ENSMUSG00000031543	Ank1	Ank-1|nb|pale	ankyrin 1, erythroid	protein-coding	0.236064187790286	-0.221778093062372	-0.0490733696096002	-0.230005675019127	-0.235066763346988	-0.220730768338352	-0.225398786046951	0.495338918359277	0.442989024438654	0.85416569064514	1
Merged-chr8-35125356-1	chr8	35125256	35125456	+	816.0	f1_c57bl6.idr	Intergenic	Intergenic	-159666.0	NM_175091	21951.0	Mm.88364	NM_175091	ENSMUSG00000031529	Tnks	4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	protein-coding	2.52397788878178	2.56727174818964	1.00047824563518	2.47060007730061	1.37162106362231	1.74839169725452	1.00697691550055	0.981328232363401	-2.70205649751254	0.0250309408924603	0.209429029865927
Merged-chr16-73771469-2	chr16	73771369	73771569	+	767.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	570598.0	NR_030464	751561.0		NR_030464	ENSMUSG00000104758	Mir691	Mirn691|mir-691|mmu-mir-691	microRNA 691	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69135873-1	chr11	69135773	69135973	+	641.0	f1_balb.idr	exon (NM_011786, exon 12 of 15)	exon (NM_011786, exon 12 of 15)	9496.0	NM_011786	23801.0	Mm.41989	NM_011786	ENSMUSG00000020892	Aloxe3	e-LOX-3|eLOX-3	arachidonate lipoxygenase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-94172134-1	chr8	94172034	94172234	+	630.0	f0_balb.idr	promoter-TSS (NM_008630)	promoter-TSS (NM_008630)	-484.0	NM_008630	17750.0	Mm.147226	NM_008630	ENSMUSG00000031762	Mt2	AA409533|MT-II|Mt-2	metallothionein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127992043-4	chr7	127991936	127992136	+	737.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_023258, exon 3 of 3)	3' UTR (NM_023258, exon 3 of 3)	1831.0	NM_023258	66824.0	Mm.24163	NM_023258	ENSMUSG00000030793	Pycard	9130417A21Rik|Asc|CARD5|TMS-1|TNS1|masc	PYD and CARD domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-57223150-4	chr16	57223054	57223254	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026254, intron 1 of 17)	intron (NM_026254, intron 1 of 17)	8312.0	NM_026254	67581.0	Mm.257819	NM_026254	ENSMUSG00000022749	Tbc1d23	4930451A13Rik|AU015720|AU043671|AU043778|D030022P07Rik|W51689	TBC1 domain family, member 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-64311910-4	chr15	64311818	64312018	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 3 of 28)	intron (NM_001276461, intron 3 of 28)	755.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-105948491-3	chr3	105948408	105948608	+	934.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304719, intron 8 of 9)	L2|LINE|L2	-10990.0	NM_027432	70465.0	Mm.5110	NM_027432	ENSMUSG00000000561	Wdr77	2610003I18Rik|2610312E17Rik|C79984|p44/MEP50	WD repeat domain 77	protein-coding	2.79423324686083	2.92772178710487	3.12148421765678	1.80277437284561	2.39441617246117	2.82866140990326	3.5771967934851	3.2806343048252	0.62152640399532	0.393565742660416	0.882309644749821
Merged-chr4-141147132-4	chr4	141147019	141147219	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172518)	promoter-TSS (NM_172518)	-803.0	NM_172518	213499.0	Mm.28865	NM_172518	ENSMUSG00000028920	Fbxo42	6720460I06Rik|mKIAA1332	F-box protein 42	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-90933145-4	chr8	90933055	90933255	+	933.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001310530, exon 1 of 38)	exon (NM_001310530, exon 1 of 38)	906.0	NM_001310530	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	0.3805225302403	0.0174162134982604	0.011761619916821	0.54646517385369	0.00121128015191196	0.0186897954819775	0.0130094569828632	0.740359881594906	-0.0952176451226382	0.965980500563131	1
Merged-chr9-7765367-2	chr9	7765267	7765467	+	755.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_152989, intron 1 of 5)	intron (NR_152989, intron 1 of 5)	1202.0	NR_152989	71929.0	Mm.283293	NM_133739	ENSMUSG00000050912	Tmem123	2310075C12Rik	transmembrane protein 123	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-21502810-2	chr14	21502710	21502910	+	708.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_017479, intron 1 of 16)	B4A|SINE|B4	3025.0	NM_017479	54169.0	Mm.248967	NM_017479	ENSMUSG00000021767	Kat6b	AI507552|B130044K16Rik|MYST-4|Morf|Myst4|mKIAA0383|qkf|querkopf	K(lysine) acetyltransferase 6B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-36709675-4	chr16	36709583	36709783	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285788, intron 3 of 7)	intron (NM_001285788, intron 3 of 7)	15705.0	NM_001285791	106347.0	Mm.17807	NM_134109	ENSMUSG00000022900	Ildr1	AU041483|AU044638	immunoglobulin-like domain containing receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-26327991-2	chr2	26327891	26328091	+	661.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355575, intron 9 of 13)	ORR1C2|LTR|ERVL-MaLR	8221.0	NM_001199147	67839.0	Mm.266611	NM_153410	ENSMUSG00000026930	Gpsm1	1810037C22Rik|AW107933|Ags3	G-protein signalling modulator 1 (AGS3-like, C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-181888986-4	chr1	181888885	181889085	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46584.0	NM_133815	98386.0	Mm.4538	NM_133815	ENSMUSG00000004880	Lbr	AI505894|ic	lamin B receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-8817033-4	chr3	8816966	8817166	+	817.270813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025434, intron 2 of 2)	L1_Mus3|LINE|L1	106791.0	NM_025434	66230.0	Mm.38460	NM_025434	ENSMUSG00000040269	Mrps28	1500012D08Rik|AW061224	mitochondrial ribosomal protein S28	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-131277249-3	chr6	131277144	131277344	+	758.361145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TTTTG)n|Simple_repeat|Simple_repeat	16000.0	NM_001327860	66441.0	Mm.46623	NM_025564	ENSMUSG00000030188	Magohb	2010012C16Rik|Mago|Magoh|Magoh-rs1	mago homolog B, exon junction complex core component	protein-coding	-1.56355737717652	-1.81244775989375	-1.82128546162293	-1.82854501295842	-1.83962066705452	-1.81053259306168	-1.81928479966835	-1.82724555674025	-1.28500227969968	0.715751224811686	1
Merged-chr8-31113313-4	chr8	31113235	31113435	+	893.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175136, intron 1 of 5)	intron (NM_175136, intron 1 of 5)	1489.0	NM_175136	68867.0	Mm.29532	NM_175136	ENSMUSG00000039328	Rnf122	1110063C11Rik	ring finger protein 122	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-9897141-4	chr10	9896978	9897178	+	908.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081344, intron 2 of 25)	intron (NM_001081344, intron 2 of 25)	3962.0	NM_001081344	78808.0	Mm.331751	NM_030191	ENSMUSG00000019790	Stxbp5	0710001E20Rik|4930565N16Rik|AW742610|LGL3|mKIAA1006	syntaxin binding protein 5 (tomosyn)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124485714-2	chr5	124485614	124485814	+	640.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_029532, intron 1 of 1)	intron (NM_029532, intron 1 of 1)	2559.0	NM_029532	76167.0	Mm.156035	NM_029532	ENSMUSG00000029402	Snrnp35	6330548G22Rik	small nuclear ribonucleoprotein 35 (U11/U12)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67097033-7	chr10	67096906	67097106	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001204915)	promoter-TSS (NM_001204915)	-18.0	NM_178606	28193.0	Mm.41272	NM_178606	ENSMUSG00000019873	Reep3	D10Ucla1	receptor accessory protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-48895667-2	chr13	48895567	48895767	+	970.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033268, intron 12 of 17)	intron (NM_001033268, intron 12 of 17)	-24782.0	NM_011078	18676.0	Mm.486213	NM_011078	ENSMUSG00000038025	Phf2	GRC5	PHD finger protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-80710134-2	chr18	80710034	80710234	+	795.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198429, intron 1 of 9)	intron (NM_198429, intron 1 of 9)	-1961.0	NM_001164112	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	1.26644599038942	1.3740891000306	0.564019693162685	0.555650105404017	1.43634700907929	0.981628041244243	0.566398759991858	0.557117649941212	-0.233738077184499	0.890338638332333	0.998431161219273
Merged-chr11-98923299-3	chr11	98923197	98923397	+	862.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011799, exon 12 of 12)	3' UTR (NM_011799, exon 12 of 12)	-14399.0	NM_009024	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-105055007-1	chr9	105054907	105055107	+	563.0	f1_balb.idr	intron (NM_053159, intron 2 of 9)	intron (NM_053159, intron 2 of 9)	1739.0	NM_053159	94062.0	Mm.29746	NM_053159	ENSMUSG00000032563	Mrpl3	2010320L16Rik|5930422H18Rik|AA407889	mitochondrial ribosomal protein L3	protein-coding	1.05171653577256	0.356527312292039	0.350990435085465	0.346749365844814	0.788222412084643	1.02839830311813	0.352207779148584	0.347488322513079	0.521867576306076	0.795995628078333	1
Merged-chr5-88698816-4	chr5	88698718	88698918	+	757.633301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22053.0	NM_026735	68473.0	Mm.35764	NM_026735	ENSMUSG00000006262	Mob1b	1110003E08Rik|AU015450|B230364F10|Mobkl1a	MOB kinase activator 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-34110625-2	chr2	34110525	34110725	+	785.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2890.0	NR_130173	329387.0	Mm.125817	NR_130173	ENSMUSG00000087461	C230014O12Rik	-	RIKEN cDNA C230014O12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-73484808-4	chr2	73484719	73484919	+	888.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	934.0	NM_001289723	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-77005819-1	chr13	77005719	77005919	+	604.5	f0_balb.idr	intron (NM_030174, intron 17 of 20)	Lx8b|LINE|L1	129649.0	NM_134071	105377.0	Mm.209730	NM_134071	ENSMUSG00000021597	Slf1	2700017A04Rik|AW545819|Ankrd32|Brctd1|Brctx|C730024G01Rik	SMC5-SMC6 complex localization factor 1	protein-coding	1.77405641726442	1.03525816379774	2.36008548990961	0.986475345804751	2.3255933308624	2.55793286401128	1.49154190481147	0.990322799806271	0.790240453037594	0.525564507274345	0.948340152465298
Merged-chr5-63830875-4	chr5	63830791	63830991	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029554, intron 1 of 3)	intron (NM_029554, intron 1 of 3)	18396.0	NM_029554	76261.0	Mm.38143	NM_029554	ENSMUSG00000060512	0610040J01Rik	AI662686	RIKEN cDNA 0610040J01 gene	protein-coding	1.45175228055479	1.25178758559595	1.35332143532816	0.83334615807321	1.46497945319766	1.26092816945122	1.70397512794107	0.835146284075828	0.449011881969609	0.737389770802755	0.998431161219273
Merged-chr3-129671951-2	chr3	129671851	129672051	+	568.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13B1|LTR|ERVK	53135.0	NM_001310737	13645.0	Mm.252481	NM_010113	ENSMUSG00000028017	Egf	AI790464	epidermal growth factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-21550476-2	chr11	21550375	21550575	+	715.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21459.0	NM_008618	17449.0	Mm.212703	NM_008618	ENSMUSG00000020321	Mdh1	B230377B03Rik|D17921|MDH-s|MDHA|Mor-2|Mor2	malate dehydrogenase 1, NAD (soluble)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-78846520-3	chr7	78846439	78846639	+	912.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029585, intron 1 of 4)	intron (NM_029585, intron 1 of 4)	672.0	NM_029585	76375.0	Mm.250541	NM_029585	ENSMUSG00000030610	Det1	2610034H20Rik	de-etiolated homolog 1 (Arabidopsis)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80791970-1	chr7	80791870	80792070	+	547.0	f1_c57bl6.idr	intron (NM_016721, intron 2 of 37)	intron (NM_016721, intron 2 of 37)	11361.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100319832-4	chr11	100319753	100319953	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011508)	promoter-TSS (NM_011508)	-96.0	NM_011508	20918.0	Mm.13886	NM_011508	ENSMUSG00000035530	Eif1	Sui1-rs1	eukaryotic translation initiation factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32710600-4	chr2	32710498	32710698	+	966.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130860, intron 2 of 6)	intron (NM_130860, intron 2 of 6)	2186.0	NM_130860	107951.0	Mm.27557	NM_130860	ENSMUSG00000009555	Cdk9	PITALRE	cyclin-dependent kinase 9 (CDC2-related kinase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-80559010-2	chr17	80558910	80559110	+	684.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360144, intron 2 of 9)	intron (NM_001360144, intron 2 of 9)	4824.0	NM_001033443	381113.0	Mm.329216	NM_001033443	ENSMUSG00000033966	Cdkl4	AU067824|Gm942	cyclin-dependent kinase-like 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-84999646-4	chr2	84999571	84999771	+	975.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_145526, exon 11 of 12)	exon (NM_145526, exon 11 of 12)	11456.0	NM_016914	53856.0	Mm.19943	NM_016914	ENSMUSG00000027072	Prg3	MBP2|MBPH	proteoglycan 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67628360-1	chr10	67628260	67628460	+	559.0	f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-56401.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106480725-4	chr11	106480624	106480824	+	906.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023913, intron 1 of 21)	intron (NM_023913, intron 1 of 21)	7072.0	NM_023913	78943.0	Mm.340943	NM_023913	ENSMUSG00000020715	Ern1	9030414B18Rik|AI225830|C85377|Ire1a|Ire1alpha|Ire1p	endoplasmic reticulum (ER) to nucleus signalling 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53117820-4	chr4	53117715	53117915	+	932.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 5 of 49)	intron (NM_013454, intron 5 of 49)	42080.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-95849968-4	chr11	95849849	95850049	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	6704.0	NM_001284397	14710.0	Mm.46299	NM_023121	ENSMUSG00000038811	Gngt2	AV096488	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-90143902-4	chr16	90143803	90144003	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033476, exon 1 of 1)	non-coding (NR_033476, exon 1 of 1)	1666.0	NR_033476	100038709.0	Mm.484070	NR_033476		Gm10789	-	predicted gene 10789	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-121652707-3	chr11	121652601	121652801	+	879.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178664, intron 3 of 12)	intron (NM_178664, intron 3 of 12)	20450.0	NM_178664	210004.0	Mm.386847	NM_178664	ENSMUSG00000046605	B3gntl1	6030413G23Rik	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-13853448-3	chr6	13853357	13853557	+	797.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-13515.0	NM_145066	64450.0	Mm.167625	NM_145066	ENSMUSG00000048216	Gpr85	2900026B03Rik	G protein-coupled receptor 85	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-52305815-1	chr12	52305715	52305915	+	547.0	f1_balb.idr	exon (NM_029760, exon 10 of 11)	exon (NM_029760, exon 10 of 11)	174794.0	NR_136881	102638611.0	Mm.363799	NR_136881	ENSMUSG00000111982	Gm35135	-	predicted gene, 35135	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-17159205-4	chr11	17159102	17159302	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024459)	promoter-TSS (NM_024459)	-96.0	NM_024459	19058.0	Mm.41840	NM_024459	ENSMUSG00000033953	Ppp3r1	CaNB1|Cnb1|MCIP1	protein phosphatase 3, regulatory subunit B, alpha isoform (calcineurin B, type I)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-53328666-2	chr19	53328566	53328766	+	848.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360345)	promoter-TSS (NM_001360345)	-747.0	NM_010847	17859.0	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-64439970-2	chr3	64439870	64440070	+	578.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR46|LTR|ERVK	-29913.0	NM_001104615	637053.0	Mm.425135	NM_001104615	ENSMUSG00000092049	Vmn2r4	AW742767|EG637053	vomeronasal 2, receptor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99147107-4	chr7	99147001	99147201	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-5957.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64240675-2	chr5	64240575	64240775	+	650.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 1 of 18)	B4A|SINE|B4	10318.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-86518592-2	chr6	86518492	86518692	+	715.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7597.0	NM_011865	23983.0	Mm.274146	NM_011865	ENSMUSG00000051695	Pcbp1	WBP17|[a]CP-1|alphaCP-1|hnRNP E1|hnRNP-E1	poly(rC) binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-120120210-2	chr1	120120110	120120310	+	550.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001172074)	promoter-TSS (NM_001172074)	709.0	NM_001037999	13167.0	Mm.2785	NM_007830	ENSMUSG00000026385	Dbi	ACBD1|Acbp|EP|endozepine	diazepam binding inhibitor	protein-coding	0.0123322274857906	0.227296498078632	0.602331405968357	0.187910598230555	0.0134418026566339	0.0313571602180292	0.0255382185545713	0.757210082134017	-0.104912503444222	0.96014401993288	1
Merged-chr13-49348816-2	chr13	49348716	49348916	+	776.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039179, intron 1 of 6)	L1MC3|LINE|L1	7267.0	NM_001039180	76895.0	Mm.197387	NM_029791	ENSMUSG00000037933	Bicd2	-	BICD cargo adaptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-55414934-2	chr13	55414834	55415034	+	877.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_011392)	TTS (NM_011392)	298.0	NM_029303	75477.0	Mm.432537	NM_029303	ENSMUSG00000044444	Pfn3	1700012P12Rik	profilin 3	protein-coding	-2.18233058068552	-2.15536956715525	-2.16352280018114	-2.04193253143548	-2.18043796738662	-2.15360272754651	-2.16167708693786	-2.16902129354933	-0.683654500252594	0.846597994014493	1
Merged-chr9-37256464-2	chr9	37256364	37256564	+	709.81665	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020258)	promoter-TSS (NM_020258)	-726.0	NM_001145960	56857.0	Mm.440037	NM_020258	ENSMUSG00000032122	Slc37a2	G3PP|Slc37a1|cI-2|ci2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-85148766-4	chr16	85148684	85148884	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198825, intron 1 of 15)	intron (NM_001198825, intron 1 of 15)	24923.0	NM_001198825	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	5.67808256115751	5.09625290676136	5.09052497666503	5.15757860968272	5.07747770305201	4.12492741430243	5.08998988390194	3.3772753327526	-0.821187542532221	0.0432997396900077	0.298683562744756
Merged-chr10-85133686-2	chr10	85133586	85133786	+	903.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007771, intron 10 of 12)	B4A|SINE|B4	-5659.0	NM_028832	74238.0	Mm.255401	NM_028832	ENSMUSG00000049038	Mterf2	1700007D05Rik|Mterfd3	mitochondrial transcription termination factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-6476108-3	chr17	6476005	6476205	+	941.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25111.0	NR_033520	547127.0	Mm.297552	NM_001045538		Tmem181b-ps	Tmem181b	transmembrane protein 181B, pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-44692050-3	chr16	44691945	44692145	+	754.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32256.0	NM_145972	212547.0	Mm.310573	NM_145972	ENSMUSG00000036208	Nepro	-	nucleolus and neural progenitor protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-85748455-2	chr9	85748368	85748568	+	942.75	f0_balb.idr|f0_c57.idr	intron (NM_175371, intron 1 of 27)	intron (NM_175371, intron 1 of 27)	866.0	NM_001081282	108837.0	Mm.22315	NM_175371	ENSMUSG00000035941	Ibtk	5430411K16Rik|AA409502|BTKI|mKIAA1417	inhibitor of Bruton agammaglobulinemia tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-62503353-5	chr10	62503229	62503429	+	913.4381099999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358965, intron 2 of 3)	B2_Mm2|SINE|B2	4428.0	NM_011157	19073.0	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-50457177-4	chr16	50457096	50457296	+	915.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24730.0	NM_001347240	70508.0	Mm.28940	NM_027444	ENSMUSG00000022641	Bbx	5530401J07Rik|5730403O13Rik	bobby sox HMG box containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16171792-1	chr7	16171692	16171892	+	856.0	f1_balb.idr	Intergenic	Intergenic	-3603.0	NM_001277988	17537.0	Mm.360516	NM_008627	ENSMUSG00000041420	Meis3	AI573393|Mrg2	Meis homeobox 3	protein-coding	0.426556336665643	0.469630363097605	0.455900891952391	0.445062868250861	1.65221115510467	1.49646931723611	1.31409555613784	0.446972364572748	4.90513425304149	0.00489328570046384	0.0658179841190192
Merged-chr5-100040453-1	chr5	100040353	100040553	+	1000.0	f0_balb.idr	intron (NM_001163035, intron 1 of 6)	intron (NM_001163035, intron 1 of 6)	459.0	NR_027990	67870.0	Mm.11311	NM_026421	ENSMUSG00000029326	Enoph1	2310057D15Rik|BB183658|C81437	enolase-phosphatase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-59055910-4	chr2	59055811	59056011	+	907.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362394, intron 1 of 13)	L1MA9|LINE|L1	104772.0	NM_001362393	227933.0	Mm.330234	NM_177650	ENSMUSG00000036641	Ccdc148	5830402J09|Gm38473	coiled-coil domain containing 148	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-25498111-4	chr5	25498001	25498201	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081383, intron 1 of 58)	CpG	682.0	NM_001081383	231051.0	Mm.332268	NM_001081383	ENSMUSG00000038056	Kmt2c	E330008K23Rik|HALR|Mll3|mKIAA1506	lysine (K)-specific methyltransferase 2C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-100184283-4	chr12	100184194	100184394	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A1|LTR|ERVL-MaLR	-3674.0	NR_045282	100038378.0	Mm.387075	NR_045282	ENSMUSG00000072884	Gm10433	-	predicted gene 10433	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-93661071-1	chr5	93660971	93661171	+	657.0	f1_balb.idr	intron (NM_001164284, intron 3 of 5)	intron (NM_001164284, intron 3 of 5)	10392.0	NM_001164284	381654.0	Mm.326591	NM_001164284	ENSMUSG00000070686	C87414	-	expressed sequence C87414	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-70969335-2	chr2	70969235	70969435	+	565.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145524, intron 7 of 9)	(CA)n|Simple_repeat|Simple_repeat	49039.0	NM_001110512	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-14056326-3	chr12	14056226	14056426	+	873.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	95712.0	NM_029007	105005.0	Mm.227253	NM_029007	ENSMUSG00000020607	Fam84a	2310003N02Rik|4731402F03Rik|AW125753|Nse1	family with sequence similarity 84, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171157239-1	chr1	171157139	171157339	+	554.0	f0_balb.idr	intron (NM_001315499, intron 1 of 5)	intron (NM_001315499, intron 1 of 5)	1721.0	NM_001315500	17528.0	Mm.9986	NM_008623	ENSMUSG00000056569	Mpz	Mpp|P-zero|P0	myelin protein zero	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-82561725-4	chr11	82561619	82561819	+	936.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-71634.0	NR_033582	791422.0	Mm.341562	NR_033582	ENSMUSG00000069796	Gm11426	-	predicted gene 11426	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-149464803-4	chr3	149464705	149464905	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	190068.0	NR_040591	381482.0	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-116102809-1	chr9	116102709	116102909	+	713.0	f1_balb.idr	intron (NM_029575, intron 5 of 6)	L1MC4a|LINE|L1	72554.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	2.50891448884188	2.21502473896373	1.13932317184486	1.77126477765169	2.84895046987646	1.18209015780249	1.14722045770728	2.99802711233781	0.711112563551697	0.536334974801431	0.953323426463389
Merged-chr17-27800898-3	chr17	27800790	27800990	+	856.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033279, intron 1 of 4)	intron (NM_001033279, intron 1 of 4)	19652.0	NM_001033279	224647.0	Mm.196577	NM_001033279	ENSMUSG00000056692	D17Wsu92e	AU020189|C030010A15|C80239	DNA segment, Chr 17, Wayne State University 92, expressed	protein-coding	-0.277968271756029	0.209846564533145	-0.269537067156498	-0.272713088448213	-0.137016040372595	0.219014900853603	-0.0948166164432431	-0.272158809997692	0.67541719368084	0.770440222751698	1
Merged-chr8-61744283-1	chr8	61744183	61744383	+	553.0	f1_c57bl6.idr	intron (NM_001293772, intron 2 of 21)	ID_B1|SINE|B4	15815.0	NM_001293773	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-43640757-4	chr6	43640601	43640801	+	959.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013861, intron 2 of 8)	intron (NM_013861, intron 2 of 8)	25577.0	NM_013861	29807.0	Mm.320979	NM_013861	ENSMUSG00000029735	Tpk1	-	thiamine pyrophosphokinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118690049-2	chr9	118689949	118690149	+	724.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 14 of 27)	MTD|LTR|ERVL-MaLR	-21643.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-4663042-4	chr13	4662960	4663160	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53896.0	NM_018859	56043.0	Mm.251908	NM_018859	ENSMUSG00000045410	Akr1e1	1810061I10Rik|Akr1e2	aldo-keto reductase family 1, member E1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85364700-5	chr12	85364610	85364810	+	846.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026775, intron 1 of 4)	MTD|LTR|ERVL-MaLR	10007.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-27310352-2	chr7	27310252	27310452	+	852.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113549, intron 23 of 29)	intron (NM_001113549, intron 23 of 29)	23296.0	NM_001113549	108075.0	Mm.272251	NM_175641	ENSMUSG00000040488	Ltbp4	2310046A13Rik	latent transforming growth factor beta binding protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-140815919-4	chr6	140815820	140816020	+	888.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	189035.0	NM_001309436	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-53390604-4	chr6	53390516	53390716	+	957.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001327821, intron 4 of 10)	L4_B_Mam|LINE|RTE-X	103313.0	NM_001327821	231991.0	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	2.4401190085808	1.08630153646652	1.0570230022961	2.58314434147194	1.85059869508373	1.60505218411262	2.61313298865785	1.03766588513332	-0.203281634127847	0.86789969193705	0.998431161219273
Merged-chr8-125724519-2	chr8	125724419	125724619	+	710.400024	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9684.0	NM_025636	66566.0	Mm.25296	NM_025636	ENSMUSG00000031851	Ntpcr	2310079N02Rik|AI449709	nucleoside-triphosphatase, cancer-related	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166662978-4	chr2	166662896	166663096	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	50836.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-178321412-2	chr1	178321312	178321512	+	642.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_149827, exon 17 of 17)	non-coding (NR_149827, exon 17 of 17)	2259.0	NM_025511	66359.0	Mm.489720	NM_025511	ENSMUSG00000026500	Cox20	2310005N03Rik|Fam36a	COX20 Cox2 chaperone	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-85915997-6	chr6	85915863	85916063	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023160)	promoter-TSS (NM_023160)	-8.0	NM_001362065	69786.0	Mm.218434	NM_176842	ENSMUSG00000054226	Tprkb	0610033G21Rik|1810034M08Rik|Cgi-121|DRWMS1|mDRWMS1	Tp53rk binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120745015-3	chr8	120744906	120745106	+	891.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301811, intron 3 of 8)	intron (NM_001301811, intron 3 of 8)	6367.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80375604-4	chr7	80375527	80375727	+	881.2666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4252.0	NM_172903	140481.0	Mm.269245	NM_172903	ENSMUSG00000038886	Man2a2	1700052O22Rik|4931438M07Rik|AI480988|MX|Man IIx	mannosidase 2, alpha 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-3267268-2	chr11	3267168	3267368	+	663.375	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007879)	promoter-TSS (NM_007879)	-805.0	NM_007879	13494.0	Mm.3250	NM_007879	ENSMUSG00000020457	Drg1	AA408859|AI132520|DRG-1|NEDD-3|Nedd3	developmentally regulated GTP binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-110389058-4	chr7	110388955	110389155	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177324, intron 17 of 40)	intron (NM_177324, intron 17 of 40)	167352.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-43855976-4	chr5	43855863	43856063	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12846.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	6.13727992493885	5.21450301015942	5.86985654039973	6.08091413898112	5.78702789947498	5.56948628592682	5.58675889328624	5.1991007060547	-0.36495986192683	0.191215692252855	0.669546561020494
Merged-chr11-3332333-4	chr11	3332209	3332409	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178149, intron 3 of 5)	CpG-1656	1578.0	NM_178149	216505.0	Mm.390323	NM_178149	ENSMUSG00000034614	Pik3ip1	1500004A08Rik|5830455E04Rik|Crkd|Hgfl	phosphoinositide-3-kinase interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81601814-2	chr10	81601714	81601914	+	754.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346695)	promoter-TSS (NM_001346695)	-914.0	NM_001346695	114606.0	Mm.206764	NM_053254	ENSMUSG00000034758	Tle6	1810057E06Rik|Grg6	transducin-like enhancer of split 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-158202788-2	chr2	158202688	158202888	+	599.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001131021, intron 11 of 15)	intron (NM_001131021, intron 11 of 15)	10780.0	NR_036606	73399.0	Mm.416861	NR_036606	ENSMUSG00000078957	1700060C20Rik	-	RIKEN cDNA 1700060C20 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-84233050-2	chr15	84232950	84233150	+	732.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_133167, intron 1 of 12)	intron (NM_133167, intron 1 of 12)	1007.0	NM_133167	170736.0	Mm.323892	NM_133167	ENSMUSG00000022438	Parvb	AI595373|AW742462|D15Gsk1|affixin	parvin, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-72421588-4	chr8	72421503	72421703	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289859)	promoter-TSS (NM_001289859)	-129.0	NM_001289859	13859.0	Mm.288894	NM_007944	ENSMUSG00000006276	Eps15l1	9830147J04Rik|AI593686|Eps15-rs|Eps15R	epidermal growth factor receptor pathway substrate 15-like 1	protein-coding	8.68936764368921	8.64463725337654	8.69087524371893	8.54730168442479	8.05436120479296	7.9173104388599	8.11780242727394	8.01361215545082	-0.63123650878089	1.65785588445346e-08	1.81929465564078e-06
Merged-chr6-113353772-2	chr6	113353672	113353872	+	643.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9850.0	NM_133926	52163.0	Mm.277373	NM_133926	ENSMUSG00000030272	Camk1	AI505105|CaMKIalpha|D6Ertd263e	calcium/calmodulin-dependent protein kinase I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-42948143-2	chr4	42948043	42948243	+	850.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1724.0	NM_001355438	56323.0	Mm.20437	NM_019874	ENSMUSG00000036052	Dnajb5	1110058L06Rik|AI462558|Hsc40|Hsp40-3	DnaJ heat shock protein family (Hsp40) member B5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116026834-2	chr11	116026734	116026934	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-2330.0	NM_008211	15081.0	Mm.18516	NM_008211	ENSMUSG00000016559	H3f3b	9430068D06Rik|H3.3B	H3 histone, family 3B	protein-coding	1.85470628500224	1.5605547525962	1.79339786405566	1.85497952506062	1.55769516999095	1.57061285829729	2.02772831965328	1.31951436544561	-0.401370940998976	0.701484558124576	0.998431161219273
Merged-chr2-167716046-4	chr2	167715927	167716127	+	884.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24850.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-99412884-4	chr13	99412785	99412985	+	998.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015515)	promoter-TSS (NR_015515)	-59.0	NR_015515	320893.0	Mm.470842	NR_015515		6430562O15Rik	-	RIKEN cDNA 6430562O15 gene	ncRNA	-2.05752322593321	-2.15521190974092	-2.16307242109104	-2.16952927915413	-2.17938029103484	-2.15350850414045	-2.16129297361887	-2.16837350464794	-0.683654500252594	0.846597994014493	1
Merged-chr14-19977151-4	chr14	19977078	19977278	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285911)	promoter-TSS (NM_001285911)	71.0	NM_001038637	14702.0	Mm.41737	NM_010315	ENSMUSG00000043004	Gng2	-	guanine nucleotide binding protein (G protein), gamma 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-31506929-3	chr16	31506827	31507027	+	887.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-77151.0	NR_152205	100047123.0	Mm.466711	NR_152205		Gm15743	-	predicted gene 15743	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-96977420-4	chr7	96977334	96977534	+	972.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153591, intron 5 of 13)	intron (NM_153591, intron 5 of 13)	25907.0	NM_153591	244141.0	Mm.274864	NM_153591	ENSMUSG00000018995	Nars2	AI875199	asparaginyl-tRNA synthetase 2 (mitochondrial)(putative)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-127272828-4	chr6	127272721	127272921	+	844.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35146.0	NR_073373	232386.0	Mm.257367	NR_073373	ENSMUSG00000107153	Gm38404	D130058E03	predicted gene, 38404	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31436141-4	chr14	31436033	31436233	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011894)	promoter-TSS (NM_011894)	-33.0	NM_011894	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-84582200-3	chr3	84582132	84582332	+	980.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293801, intron 1 of 7)	intron (NM_001293801, intron 1 of 7)	393.0	NM_001293801	99889.0	Mm.316536	NM_001081093	ENSMUSG00000074513	Arfip1	2310030I10Rik|Arfaptin|D3Ertd598e	ADP-ribosylation factor interacting protein 1	protein-coding	2.72881052155951	3.32428481930474	2.86618029530713	1.46914849707127	2.83711080652918	3.49346538680861	2.53452470170588	2.31141730856031	0.216551458418306	0.788390701068966	0.998431161219273
Merged-chr17-26120375-2	chr17	26120303	26120503	+	890.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_021793, exon 10 of 13)	exon (NM_021793, exon 10 of 13)	-3100.0	NM_024227	68611.0	Mm.273102	NM_024227	ENSMUSG00000024181	Mrpl28	1110015G04Rik|L28mt|MAAT1|MRP-L28|p15	mitochondrial ribosomal protein L28	protein-coding	0.259335228936482	-0.135503319841881	0.0541265399652095	-0.146355349944638	-0.153103589231745	-0.134132049949655	-0.140261345637655	0.879403367154277	1.31929617476387	0.562378265048277	1
Merged-chr1-131990621-4	chr1	131990528	131990728	+	893.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16977.0	NM_007923	13714.0	Mm.254233	NM_007923	ENSMUSG00000026436	Elk4	2310011G17Rik|A130026I01Rik|BB162516|SAP-1|Sap1	ELK4, member of ETS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67960113-3	chr10	67960003	67960203	+	890.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A0-int|LTR|ERVL-MaLR	13605.0	NR_152797	75067.0	Mm.416933	NR_152797	ENSMUSG00000112899	4930521O17Rik	-	RIKEN cDNA 4930521O17 gene	ncRNA	3.98493104429612	2.77068157196237	3.31382617081668	3.7264435588901	1.14034853937913	1.32749855726455	1.27143220355204	2.16788721523609	-4.19775397835063	1.44334680999086e-05	0.000625925603359168
Merged-chr5-113592039-4	chr5	113591932	113592132	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41612.0	NM_177292	320916.0	Mm.102783	NM_177292	ENSMUSG00000063430	Wscd2	4933413A10Rik|C530024P05Rik|Gm450	WSC domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-83438562-2	chr14	83438462	83438662	+	574.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2B2|LINE|L1	636728.0	NR_153783	102635012.0	Mm.399509	NR_153783	ENSMUSG00000115043	Gm32455	-	predicted gene, 32455	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-65574607-2	chr17	65574507	65574707	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-33825.0	NM_001289486	381107.0	Mm.141275	NM_001008973	ENSMUSG00000045036	Tmem232	E130009J12Rik|Gm940|Tes13-L|Tes13-S	transmembrane protein 232	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-86443732-2	chr1	86443632	86443832	+	709.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur3|SINE|Alu	17403.0	NM_027966	71863.0	Mm.179627	NM_027966	ENSMUSG00000036574	Tex44	1700019O17Rik	testis expressed 44	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171437517-4	chr1	171437459	171437659	+	868.408325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_151523)	promoter-TSS (NR_151523)	-2.0	NM_172647	16456.0	Mm.294882	NM_172647	ENSMUSG00000038235	F11r	9130004G24|AA638916|ESTM33|JAM|JAM-1|JAM-A|Jcam|Jcam1|Ly106	F11 receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35178775-4	chr17	35178710	35178910	+	795.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2758.0	NM_001361501	11629.0	Mm.10747	NM_019467	ENSMUSG00000024397	Aif1	AI607846|AIF-1|D17H6S50E|G1|Iba1	allograft inflammatory factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-19897264-4	chr5	19897159	19897359	+	891.229126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170746, intron 2 of 22)	intron (NM_001170746, intron 2 of 22)	-10259.0	NM_001170745	50791.0	Mm.332231	NM_015823	ENSMUSG00000040003	Magi2	AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705	membrane associated guanylate kinase, WW and PDZ domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-153493457-4	chr1	153493298	153493498	+	621.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-5738.0	NM_007842	13211.0	Mm.20000	NM_007842	ENSMUSG00000042699	Dhx9	AI326842|Ddx9|HEL-5|NDHII|RHA|mHEL-5	DEAH (Asp-Glu-Ala-His) box polypeptide 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-16046873-4	chr9	16046811	16047011	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080814, intron 3 of 24)	intron (NM_001080814, intron 3 of 24)	-172355.0	NM_145712	244701.0	Mm.222631	NM_145712	ENSMUSG00000050901	Mtnr1b	Mel-1B-R|Mel1b|Mt2	melatonin receptor 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-75716338-4	chr18	75716248	75716448	+	823.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18652.0	NM_201354	269037.0	Mm.36745	NM_201354	ENSMUSG00000052928	Ctif	Gm672	CBP80/20-dependent translation initiation factor	protein-coding	3.42621345011992	2.83287301166837	3.71614430234726	3.68573846401802	3.659325397899	4.14954549368415	3.74481520675769	4.62080075087453	0.913588365861808	0.0752328029806221	0.415733236325226
Merged-chr4-87826555-4	chr4	87826464	87826664	+	962.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027326, intron 5 of 10)	intron (NM_027326, intron 5 of 10)	-20241.0	NM_029931	70122.0	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-73214443-4	chr2	73214334	73214534	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025942)	promoter-TSS (NM_025942)	13.0	NM_030091	67059.0	Mm.22661	NM_025942	ENSMUSG00000027108	Ola1	2510025G09Rik|2810405J23Rik|2810409H07Rik|Gtpbp9|PTD004	Obg-like ATPase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-32238699-1	chr12	32238599	32238799	+	623.0	f1_c57bl6.idr	Intergenic	Intergenic	-30050.0	NM_001146200	30955.0	Mm.101369	NM_020272	ENSMUSG00000020573	Pik3cg	5830428L06Rik|PI3Kgamma|p110gamma	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding	-0.537042663327541	-0.52631001136162	-0.0869107008270441	-0.532551757110652	-0.394564961515709	-0.0369037288549149	-0.529060550315543	-0.532078087345575	0.499682508006168	0.849792375797826	1
Merged-chr2-130731420-4	chr2	130731336	130731536	+	913.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029432, intron 27 of 36)	L2a|LINE|L2	-33917.0	NM_001081162	269356.0	Mm.441391	NM_001081162	ENSMUSG00000074796	Slc4a11	AI503023|BTR1|NaBC1	solute carrier family 4, sodium bicarbonate transporter-like, member 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71755192-3	chr8	71755109	71755309	+	830.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29528.0	NM_028715	74015.0	Mm.22025	NM_028715	ENSMUSG00000070000	Fcho1	3322402E17Rik|N28152	FCH domain only 1	protein-coding	2.54099346763824	1.49865259941699	1.61776801443115	2.45044765993119	1.49540866210476	1.02190168508255	0.997537348554572	1.41136159481097	-2.67442378506261	0.0235321877653697	0.200635052310477
Merged-chr11-106777152-1	chr11	106777052	106777252	+	595.0	f0_balb.idr	non-coding (NR_027785, exon 3 of 8)	non-coding (NR_027785, exon 3 of 8)	2314.0	NM_001353435	50776.0	Mm.859	NM_015810	ENSMUSG00000020718	Polg2	mtPolB|p55|polG-beta	polymerase (DNA directed), gamma 2, accessory subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-29771100-2	chr2	29771000	29771200	+	560.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	9572.0	NM_001177392	433416.0	Mm.330112	NM_001034887	ENSMUSG00000075425	Gm13547	-	predicted gene 13547	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-113713565-2	chr9	113713465	113713665	+	700.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-5306.0	NM_011052	18571.0	Mm.29816	NM_011052	ENSMUSG00000032504	Pdcd6ip	AI480591|AW544830|Aip1|Alix|C76364|Eig2|mKIAA1375	programmed cell death 6 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-77306045-3	chr15	77305950	77306150	+	596.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053104, intron 1 of 13)	intron (NM_053104, intron 1 of 13)	1003.0	NM_001110827	93686.0	Mm.202774	NM_053104	ENSMUSG00000033565	Rbfox2	Fbm2|Fxh|Hrnbp2|Rbm9	RNA binding protein, fox-1 homolog (C. elegans) 2	protein-coding	-1.31349849087795	-1.28274354783242	-1.29349452597086	-1.3023256995151	-1.3130151546297	-1.28041376602105	-0.694015972326031	-1.30074492367298	2.57396649482007	0.456321314346772	1
Merged-chr16-82234405-2	chr16	82234305	82234505	+	645.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2B|LINE|L1	1033708.0	NM_010954	17968.0	Mm.433941	NM_010954	ENSMUSG00000022762	Ncam2	Ncam-2|Ocam|RNCAM	neural cell adhesion molecule 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-64538541-1	chr17	64538441	64538641	+	642.0	f0_balb.idr	intron (NR_045899, intron 1 of 3)	intron (NR_045899, intron 1 of 3)	17049.0	NR_045899	100043582.0	Mm.11170	NR_045899	ENSMUSG00000073377	AU016765	-	expressed sequence AU016765	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-55843858-2	chr16	55843758	55843958	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001134457, exon 6 of 6)	3' UTR (NM_001134457, exon 6 of 6)	-5217.0	NM_001159395	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-58015595-2	chr13	58015495	58015695	+	706.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001195075, intron 13 of 16)	intron (NM_001195075, intron 13 of 16)	7605.0	NR_030544	100124491.0		NR_030544	ENSMUSG00000077962	Mir874	Mirn874|mir-874|mmu-mir-874	microRNA 874	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-151103837-3	chr1	151103736	151103936	+	918.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34198.0	NR_038011	402734.0	Mm.337666	NR_038011		C730036E19Rik	lncLSTR	RIKEN cDNA C730036E19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31206762-4	chr14	31206649	31206849	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022656)	promoter-TSS (NM_022656)	77.0	NM_022656	64652.0	Mm.298728	NM_022656	ENSMUSG00000021910	Nisch	1200007D05Rik|3202002H23Rik|AW494485|I-1|edsn	nischarin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-40513717-2	chr8	40513613	40513813	+	820.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_033560, intron 1 of 11)	intron (NM_033560, intron 1 of 11)	1930.0	NM_033560	52348.0	Mm.489696	NM_033560	ENSMUSG00000031600	Vps37a	2210018P21Rik|4930592A21Rik|AW261445|D8Ertd531e	vacuolar protein sorting 37A	protein-coding	0.862480829012276	1.91914609724208	0.916694303651966	2.18241184896804	1.09241267333536	2.27309715470028	2.18591710572409	0.900414583969956	0.402001815411611	0.762149108299609	0.998431161219273
Merged-chr8-94433600-3	chr8	94433522	94433722	+	886.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_015514, exon 3 of 3)	non-coding (NR_015514, exon 3 of 3)	1481.0	NR_015514	320377.0	Mm.486022	NR_015514		9330175E14Rik	A630085K21	RIKEN cDNA 9330175E14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-88143611-2	chr18	88143511	88143711	+	566.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	750596.0	NM_018821	54607.0	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-158767910-4	chr2	158767795	158767995	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027975)	promoter-TSS (NM_027975)	-204.0	NM_027975	71878.0	Mm.85162	NM_027975	ENSMUSG00000027654	Fam83d	2310007D09Rik|BB104611	family with sequence similarity 83, member D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132961612-2	chr4	132961512	132961712	+	876.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12483.0	NM_010208	14191.0	Mm.271665	NM_010208	ENSMUSG00000028874	Fgr	-	FGR proto-oncogene, Src family tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-181072323-4	chr2	181072212	181072412	+	793.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33135.0	NM_015730	11438.0	Mm.252369	NM_015730	ENSMUSG00000027577	Chrna4	Acra-4|Acra4|EBN1|ENFL1	cholinergic receptor, nicotinic, alpha polypeptide 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126135614-4	chr7	126135513	126135713	+	737.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028816, intron 9 of 23)	intron (NM_028816, intron 9 of 23)	-53202.0	NM_001358885	269994.0	Mm.39599	NM_001101488	ENSMUSG00000046182	Gsg1l	AI852434|C230098I05Rik|G630023A01Rik|Gm637|g1l	GSG1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-44447580-2	chr10	44447480	44447680	+	857.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_007548, intron 3 of 6)	intron (NM_007548, intron 3 of 6)	11168.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-6599926-2	chr11	6599826	6600026	+	821.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081652, exon 2 of 8)	exon (NM_001081652, exon 2 of 8)	6128.0	NM_001081652	192950.0	Mm.337771	NM_001081652	ENSMUSG00000041073	Nacad	D230024G13Rik|mKIAA0363	NAC alpha domain containing	protein-coding	0.735218730452126	0.631568754917315	0.254500460237666	0.248883195348977	0.240905212648258	0.639530570891619	1.0603384582584	0.249866162271742	0.66555198087264	0.729449053134948	1
Merged-chr6-145234202-2	chr6	145234102	145234302	+	605.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021284, intron 3 of 4)	intron (NM_021284, intron 3 of 4)	16029.0	NM_021284	16653.0	Mm.383182	NM_021284	ENSMUSG00000030265	Kras	AI929937|K-Ras|K-Ras 2|K-ras|Ki-ras|Kras-2|Kras2|c-K-ras|c-Ki-ras|p21B|ras	Kirsten rat sarcoma viral oncogene homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-122660627-3	chr6	122660529	122660729	+	811.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34205.0	NM_139218	73708.0	Mm.27982	NM_139218	ENSMUSG00000046323	Dppa3	2410075G02Rik|PCG7|PGC7|Stella	developmental pluripotency-associated 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-7572827-4	chr9	7572733	7572933	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310717, intron 2 of 9)	B3|SINE|B2	1437.0	NM_001310717	234911.0	Mm.334940	NM_001030289	ENSMUSG00000070323	Mmp27	Gm180	matrix metallopeptidase 27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-69022359-1	chr8	69022259	69022459	+	561.0	f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-66377.0	NM_007509	11966.0	Mm.249096	NM_007509	ENSMUSG00000006273	Atp6v1b2	AI194269|AI790362|Atp6b2|HO57|R74844	ATPase, H+ transporting, lysosomal V1 subunit B2	protein-coding	2.0147576607317	1.51888669147731	2.33986496119561	3.70418836415428	2.03395154834	1.98455633039415	2.08019005522244	1.14869837191046	-1.73742688856761	0.0772653784214627	0.42291515068463
Merged-chr14-61681406-4	chr14	61681253	61681453	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028264, intron 1 of 6)	intron (NR_028264, intron 1 of 6)	1020.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98201642-2	chr11	98201542	98201742	+	937.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-1663.0	NM_001109628	69131.0	Mm.260516	NM_026952	ENSMUSG00000003119	Cdk12	1810022J16Rik|AI646528|Crk7|Crkrs|D11Ertd752e|Pksc	cyclin-dependent kinase 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-85122030-3	chr1	85121932	85122132	+	822.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E-int|LTR|ERVL-MaLR	-12179.0	NM_213615	381287.0	Mm.487565	NM_213615	ENSMUSG00000089844	A530032D15Rik	Gm1888	RIKEN cDNA A530032D15Rik gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-24776407-4	chr13	24776294	24776494	+	981.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR41|LTR|ERVL	-14457.0	NM_020567	57441.0	Mm.12239	NM_020567	ENSMUSG00000006715	Gmnn	AW546347|Gem	geminin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167773122-4	chr2	167773016	167773216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	81939.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-62049278-2	chr15	62049178	62049378	+	636.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_132746, intron 1 of 6)	L1ME1|LINE|L1	10021.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-46834383-4	chr11	46834270	46834470	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178759, intron 5 of 8)	intron (NM_178759, intron 5 of 8)	23571.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	2.33598131311795	2.15957432672753	1.9400684356951	1.29859191317942	2.65114125337721	2.17539395699102	2.64305847061903	1.89700336471064	0.938074719717423	0.315475002770025	0.817980640376335
Merged-chr3-82759105-1	chr3	82759005	82759205	+	629.0	f0_balb.idr	Intergenic	Intergenic	117378.0	NM_001277170	633285.0	Mm.265114	NM_001146328	ENSMUSG00000033882	Rbm46	EG633285|Gm761	RNA binding motif protein 46	protein-coding	-2.05752322593321	-2.15521190974092	-2.16307242109104	-2.16952927915413	-2.17938029103484	-2.15350850414045	-2.16129297361887	-2.16837350464794	-0.683654500252594	0.846597994014493	1
Merged-chr2-18923289-1	chr2	18923189	18923389	+	951.0	f0_balb.idr	intron (NM_008845, intron 1 of 9)	intron (NM_008845, intron 1 of 9)	74832.0	NM_008845	18718.0	Mm.313977	NM_008845	ENSMUSG00000026737	Pip4k2a	AW742916|Pip5k2a	phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-151686007-2	chr1	151685907	151686107	+	708.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_022018, intron 5 of 13)	intron (NM_022018, intron 5 of 13)	68720.0	NR_151474	102640772.0		NR_151473	ENSMUSG00000100594	2810414N06Rik	-	RIKEN cDNA 2810414N06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-138175341-4	chr1	138175235	138175435	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011210)	promoter-TSS (NM_011210)	-30.0	NM_001268286	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-136323902-3	chr3	136323847	136324047	+	659.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033350, intron 1 of 16)	intron (NM_001033350, intron 1 of 16)	2119.0	NM_001310749	242248.0	Mm.30832	NM_001033350	ENSMUSG00000037922	Bank1	A530094C12Rik|AI451642|AVIEF|BANK	B cell scaffold protein with ankyrin repeats 1	protein-coding	2.35798679007691	2.15700655114622	2.39726431202214	1.16213856667863	2.03589639166366	2.40490121908911	1.64530015595843	1.16605141450867	-0.527176607989404	0.628720678408798	0.981055511574238
Merged-chr3-107067426-3	chr3	107067328	107067528	+	717.388855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27924.0	NR_033498	229694.0	Mm.347584	NM_173787	ENSMUSG00000056145	AI504432	A230102G19	expressed sequence AI504432	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-107749635-3	chr5	107749469	107749669	+	922.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007964, intron 17 of 17)	intron (NM_007964, intron 17 of 17)	-23764.0	NM_001267621	14581.0	Mm.2078	NM_010278	ENSMUSG00000029275	Gfi1	AW495828|Gfi-1|Pal-1|Pal1	growth factor independent 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-99297787-4	chr5	99297695	99297895	+	932.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_030692, exon 4 of 4)	non-coding (NR_030692, exon 4 of 4)	-44868.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127534617-7	chr10	127534529	127534729	+	830.392883	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183297)	promoter-TSS (NM_183297)	-70.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-23532644-2	chr13	23532544	23532744	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1267.0	NM_175661	319173.0	Mm.377878	NM_175661	ENSMUSG00000061991	Hist1h2af	H2a-221	histone cluster 1, H2af	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-108904070-2	chr12	108903970	108904170	+	883.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_177602, intron 2 of 6)	intron (NM_177602, intron 2 of 6)	9798.0	NM_177602	212198.0	Mm.342082	NM_177602	ENSMUSG00000040877	Wdr25	B930090D16Rik	WD repeat domain 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-110854161-2	chr12	110854061	110854261	+	665.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_028365, intron 1 of 7)	intron (NM_028365, intron 1 of 7)	3882.0	NM_028365	72805.0	Mm.443524	NM_028365	ENSMUSG00000021271	Zfp839	2810455K09Rik	zinc finger protein 839	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-98258531-2	chr12	98258431	98258631	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008079, intron 1 of 16)	intron (NM_008079, intron 1 of 16)	928.0	NM_008079	14420.0	Mm.5120	NM_008079	ENSMUSG00000021003	Galc	2310068B06Rik|A930008M05Rik|AW212969|AW413532|Gacy|twi|twitcher	galactosylceramidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-117902491-3	chr9	117902380	117902580	+	633.333313	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	-138042.0	NM_001286507	27215.0	Mm.92705	NM_013727	ENSMUSG00000039285	Azi2	AA410145|AZ2	5-azacytidine induced gene 2	protein-coding	1.42003903271245	0.913486250280223	1.85268773031935	1.24057103890601	1.31947893247765	0.916665591902512	1.67445200579528	1.50879895009262	-0.0811752730241982	0.949760839253606	0.998431161219273
Merged-chr11-77982559-4	chr11	77982424	77982624	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_174852)	promoter-TSS (NM_174852)	-292.0	NM_174852	268448.0	Mm.274329	NM_174852	ENSMUSG00000037791	Phf12	2410142K10Rik|F630045O13|PF1|mKIAA1523	PHD finger protein 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-20892312-3	chr18	20892165	20892365	+	558.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177038, intron 1 of 28)	MTE2b|LTR|ERVL-MaLR	3813.0	NM_029491	75964.0	Mm.273769	NM_029491	ENSMUSG00000033382	Trappc8	5033403J15Rik|AI845423|D030074E01Rik|Trs85|mKIAA1012	trafficking protein particle complex 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78278583-2	chr15	78278481	78278681	+	884.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6268.0	NR_106137	102465776.0		NR_106137	ENSMUSG00000098996	Mir7676-1	Gm27600|mmu-mir-7676-1	microRNA 7676-1	ncRNA	1.1012812194356	1.00092668148571	1.21652860131393	1.06162865650973	1.36803425484254	0.631695576599717	0.622183682316718	0.614022618053066	-1.07393887774087	0.494849152565634	0.935679785535167
Merged-chr9-50444012-4	chr9	50443915	50444115	+	825.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-50510.0	NM_029639	76509.0	Mm.29959	NM_029639	ENSMUSG00000032068	Plet1	0610037B23Rik|1600029D21Rik|AA407923|AU043048	placenta expressed transcript 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31539352-2	chr14	31539252	31539452	+	661.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009937, intron 11 of 16)	intron (NM_009937, intron 11 of 16)	38031.0	NM_009937	382864.0	Mm.239821	NM_009937	ENSMUSG00000057606	Colq	A130034K24Rik	collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-103063095-3	chr2	103062994	103063194	+	885.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175094, intron 1 of 10)	intron (NM_175094, intron 1 of 10)	10419.0	NM_175094	27402.0	Mm.315011	NM_175094	ENSMUSG00000010914	Pdhx	AI481367|E3bp|Pdx1	pyruvate dehydrogenase complex, component X	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-183803549-4	chr1	183803453	183803653	+	912.908325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151520, intron 2 of 2)	intron (NR_151520, intron 2 of 2)	54576.0	NR_151520	102637191.0	Mm.417076	NR_151520	ENSMUSG00000103305	Gm34068	-	predicted gene, 34068	ncRNA	3.12780608429783	3.64515733845334	3.38512876950612	3.0431310062018	3.15338267644135	2.26643596049645	3.41074514874603	2.46900807986956	-0.678734763592427	0.294691961537395	0.798191705447
Merged-chr2-73910686-4	chr2	73910667	73910867	+	863.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301721, intron 2 of 4)	CpG	559.0	NM_175015	228033.0	Mm.2966	NM_175015	ENSMUSG00000018770	Atp5g3	6030447M23	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-60016347-1	chr13	60016247	60016447	+	799.0	f0_balb.idr	Intergenic	Intergenic	-13364.0	NR_046142	328263.0	Mm.123405	NR_046142	ENSMUSG00000114531	A530065N20Rik	A530065N20	RIKEN cDNA A530046M15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-24680923-1	chr12	24680823	24681023	+	601.0	f0_balb.idr	5' UTR (NM_001161807, exon 1 of 5)	5' UTR (NM_001161807, exon 1 of 5)	872.0	NM_138686	12879.0	Mm.52265	NM_138686	ENSMUSG00000062563	Cys1	2900006B19Rik|AV218859|Ccap|ck|cpk	cystin 1	protein-coding	0.3928883179709	1.1417393094613	0.416073414498449	0.407459583644455	0.856698719653644	0.429521069103076	1.57970479554089	0.778367950498262	1.64055003309993	0.347281754669205	0.84749391044853
Merged-chr9-110997427-4	chr9	110997302	110997502	+	991.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152179, intron 2 of 6)	intron (NR_152179, intron 2 of 6)	-7689.0	NM_153100	235636.0	Mm.441138	NM_153100	ENSMUSG00000066319	Rtp3	Tmem7	receptor transporter protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-121413807-4	chr2	121413722	121413922	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007952)	promoter-TSS (NM_007952)	-30.0	NM_153075	212670.0	Mm.384318	NM_153075	ENSMUSG00000033486	Catsper2	-	cation channel, sperm associated 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-87876422-3	chr6	87876300	87876500	+	843.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11540.0	NM_017477	54161.0	Mm.258785	NM_017477	ENSMUSG00000030058	Copg1	AU019265|BC056168|Copg|D6Ertd71e|D6Wsu16e	coatomer protein complex, subunit gamma 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-48264015-7	chr17	48263839	48264039	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172623)	promoter-TSS (NM_172623)	-356.0	NM_172623	224840.0	Mm.131234	NM_172623	ENSMUSG00000051682	Treml4	5031403H21Rik|BB137214|IDCP1|TLT-4|TLT4|Treml3	triggering receptor expressed on myeloid cells-like 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-82903988-2	chr18	82903888	82904088	+	851.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6891.0	NM_183033	329003.0	Mm.326526	NM_183033	ENSMUSG00000058881	Zfp516	C330029B10Rik|D230016L03|Zfp26l|Znf516|mKIAA0222	zinc finger protein 516	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-108404876-4	chr6	108404773	108404973	+	987.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 33 of 61)	L1MB7|LINE|L1	-84870.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-48909230-2	chr7	48909130	48909330	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27634.0	NM_001360812	108961.0	Mm.240566	NM_001013368	ENSMUSG00000046179	E2f8	4432406C08Rik|AA410048	E2F transcription factor 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-59242322-2	chr2	59242222	59242422	+	781.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 2 of 20)	intron (NM_175464, intron 2 of 20)	81472.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-103968486-3	chr2	103968389	103968589	+	887.06665	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142337, intron 1 of 3)	ID_B1|SINE|B4	-1068.0	NM_001142336	16909.0	Mm.29266	NM_008505	ENSMUSG00000032698	Lmo2	Rbtn-2|Rbtn2|Rhom-2|Ttg2	LIM domain only 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-80665349-4	chr1	80665270	80665470	+	998.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285927)	promoter-TSS (NM_001285927)	-18.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-29693921-2	chr12	29693819	29694019	+	605.5	f0_balb.idr|f0_c57.idr	intron (NM_001361657, intron 3 of 24)	Lx|LINE|L1	-7474.0	NR_046080	328075.0	Mm.447832	NR_046080	ENSMUSG00000112663	C630031E19Rik	C630031E19	RIKEN cDNA C630031E19 gene	ncRNA	0.519714880657786	0.0354326310494163	0.0152504872931429	-0.156391838722633	-0.161126611264566	-0.147672260094896	0.0197094995515937	0.00234892058939106	-1.9190614590732	0.373161362158048	1
Merged-chr4-136180576-3	chr4	136180476	136180676	+	946.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001305399)	promoter-TSS (NM_001305399)	-206.0	NM_001305399	242705.0	Mm.307932	NM_177733	ENSMUSG00000018983	E2f2	E2F-2	E2F transcription factor 2	protein-coding	2.05977031353937	2.33383942718439	1.37547196001783	1.60868357568677	3.18977656519167	3.44483583171212	2.96207205750059	2.6837621897426	2.52691582465469	0.00224817923253837	0.0364837526131587
Merged-chr15-55306499-4	chr15	55306399	55306599	+	873.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1251.0	NM_181277	12818.0	Mm.297859	NM_181277	ENSMUSG00000022371	Col14a1	5730412L22Rik|AW108078	collagen, type XIV, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-121212862-1	chr4	121212762	121212962	+	559.0	f1_c57bl6.idr	intron (NM_001346660, intron 1 of 7)	intron (NM_001346660, intron 1 of 7)	2222.0	NM_001346660	109263.0	Mm.215745	NM_001081013	ENSMUSG00000049878	Rlf	9230110M18Rik|AI195322|MommeD8	rearranged L-myc fusion sequence	protein-coding	-0.450536496501353	0.0423014715780325	-0.442852035488002	0.0740438122986252	-0.307731189191263	-0.438242147853962	-0.442023506410843	-0.445241046127504	-2.58025233011589	0.313860082088544	1
Merged-chr9-35541660-4	chr9	35541556	35541756	+	967.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_013932)	TTS (NM_013932)	16814.0	NM_013932	30959.0	Mm.291723	NM_013932	ENSMUSG00000032101	Ddx25	AW047046|GRTH	DEAD (Asp-Glu-Ala-Asp) box polypeptide 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-40142952-4	chr4	40142868	40143068	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007386)	promoter-TSS (NM_007386)	-297.0	NM_007386	11428.0	Mm.331547	NM_007386	ENSMUSG00000028405	Aco1	Aco-1|Irebp|Irp1	aconitase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117859596-2	chr10	117859496	117859696	+	822.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-13622.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-147944846-2	chr1	147944746	147944946	+	614.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	1447159.0	NM_001145807	215378.0	Mm.441817	NM_153539	ENSMUSG00000035131	Brinp3	B830045N13Rik|Fam5c	bone morphogenetic protein/retinoic acid inducible neural specific 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80685296-2	chr10	80685196	80685396	+	563.333374	f1_balb.idr|f1_c57bl6.idr	TTS (NM_172457)	TTS (NM_172457)	-9003.0	NM_021462	17347.0	Mm.42126	NM_021462	ENSMUSG00000020190	Mknk2	2010016G11Rik|Gprk7|Mnk2	MAP kinase-interacting serine/threonine kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-107890173-4	chr13	107890089	107890289	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145456)	promoter-TSS (NM_145456)	-125.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100327311-2	chr11	100327211	100327411	+	690.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7096.0	NM_010257	14459.0	Mm.4767	NM_010257	ENSMUSG00000017165	Gast	GAS	gastrin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-122257187-3	chr9	122257066	122257266	+	970.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_133979, exon 9 of 13)	exon (NM_133979, exon 9 of 13)	16862.0	NR_106185	102465896.0		NR_106185	ENSMUSG00000098922	Mir8106	Gm27594|mmu-mir-8106	microRNA 8106	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-127241387-2	chr6	127241287	127241487	+	621.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	66580.0	NR_073373	232386.0	Mm.257367	NR_073373	ENSMUSG00000107153	Gm38404	D130058E03	predicted gene, 38404	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-107799419-2	chr13	107799319	107799519	+	672.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 2 of 14)	intron (NM_145456, intron 2 of 14)	90645.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-95211991-4	chr4	95211876	95212076	+	956.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-159754.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-75304007-2	chr10	75303907	75304107	+	919.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153406, intron 13 of 15)	intron (NM_153406, intron 13 of 15)	-12870.0	NM_009630	11540.0	Mm.333734	NM_009630	ENSMUSG00000020178	Adora2a	A2AAR|A2aR|AA2AR	adenosine A2a receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-81829098-2	chr18	81828998	81829198	+	614.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	162982.0	NR_039589	100628596.0		NR_039589	ENSMUSG00000093036	Mir5127	mmu-mir-5127|mu-mir-5127	microRNA 5127	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-5496152-4	chr15	5496037	5496237	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045274)	promoter-TSS (NR_045274)	-181.0	NR_045274	71432.0	Mm.291087	NR_045274	ENSMUSG00000110018	5430437J10Rik	-	RIKEN cDNA 5430437J10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-129546077-1	chr6	129545977	129546177	+	774.333313	f0_balb.idr	Intergenic	Intergenic	-12793.0	NR_045270	100504641.0	Mm.398286	NR_045270	ENSMUSG00000097675	1700101I11Rik	-	RIKEN cDNA 1700101I11 gene	ncRNA	-0.746588621850564	-0.733428717074678	-0.737707979478999	-0.741030787865135	-0.745758519090386	0.184562667792095	-0.736761503062351	-0.550140338491445	3.50713870220817	0.204050896315755	1
Merged-chr14-30137688-2	chr14	30137588	30137788	+	747.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083616, intron 9 of 46)	intron (NM_001083616, intron 9 of 46)	115055.0	NM_175343	218865.0	Mm.259916	NM_172264	ENSMUSG00000015970	Chdh	AU041472|D630034H06Rik	choline dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-31095759-4	chr3	31095674	31095874	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039090, intron 1 of 6)	intron (NM_001039090, intron 1 of 6)	716.0	NM_001271772	20482.0	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-33049063-1	chr2	33048963	33049163	+	602.0	f0_balb.idr	intron (NM_001355201, intron 6 of 29)	intron (NM_001355201, intron 6 of 29)	37394.0	NM_001355202	99326.0	Mm.41290	NM_178888	ENSMUSG00000038860	Garnl3	AW120551	GTPase activating RANGAP domain-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-84183606-4	chr17	84183520	84183720	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001001806)	TTS (NM_001001806)	4327.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-108670577-2	chr5	108670476	108670676	+	914.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_174870, exon 3 of 3)	3' UTR (NM_174870, exon 3 of 3)	4220.0	NM_001310692	231583.0	Mm.440571	NM_174870	ENSMUSG00000046959	Slc26a1	Sat1	solute carrier family 26 (sulfate transporter), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-55798222-4	chr4	55798119	55798319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-265744.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75291086-4	chr11	75290986	75291186	+	757.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57297.0	NM_001164223	68275.0	Mm.102574	NM_026653	ENSMUSG00000000751	Rpa1	5031405K23Rik|70kDa|AA589576|AW557552|RF-A|RP-A|Rpa	replication protein A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-151346215-2	chr1	151346115	151346315	+	581.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039511, intron 1 of 7)	intron (NM_001039511, intron 1 of 7)	1717.0	NM_001039511	117198.0	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-78432208-2	chr10	78432108	78432308	+	591.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2591.0	NR_105837	102465221.0		NR_105837	ENSMUSG00000098932	Mir6410	Gm27916|mmu-mir-6410	microRNA 6410	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180248619-2	chr1	180248519	180248719	+	597.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001128605, intron 1 of 10)	intron (NM_001128605, intron 1 of 10)	-2669.0	NM_011183	19165.0	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-41409026-1	chr3	41408926	41409126	+	803.0	f0_balb.idr	Intergenic	Intergenic	84173.0	NR_040385	78706.0	Mm.366094	NR_040385	ENSMUSG00000097639	Platr4	C430002E04Rik	pluripotency associated transcript 4	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31438209-2	chr14	31438109	31438309	+	936.625	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2109.0	NM_011894	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-45926157-4	chr5	45926050	45926250	+	978.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_110478)	TTS (NR_110478)	6259.0	NR_110478	78106.0	Mm.243807	NR_110478	ENSMUSG00000106602	4930405L22Rik	-	RIKEN cDNA 4930405L22 gene	ncRNA	3.6103300492301	4.04579165695585	4.10601665192593	4.85679459269306	3.4206958759298	3.20355044568557	3.53763552605388	4.45875750440116	-0.654853585323965	0.206405560725844	0.694292103481728
Merged-chr5-122233095-2	chr5	122232995	122233195	+	581.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359454, intron 3 of 7)	intron (NM_001359454, intron 3 of 7)	22808.0	NM_028752	74096.0	Mm.28804	NM_028752	ENSMUSG00000064267	Hvcn1	0610039P13Rik|AI450555|BTS|HV1|Vsop.|mVSOP	hydrogen voltage-gated channel 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-154215392-3	chr2	154215289	154215489	+	866.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001012392, intron 12 of 15)	intron (NM_001012392, intron 12 of 15)	-8353.0	NM_144890	228802.0	Mm.167411	NM_144890	ENSMUSG00000038572	Bpifb5	Lplunc5	BPI fold containing family B, member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165992012-2	chr2	165991912	165992112	+	949.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008679)	promoter-TSS (NM_008679)	-625.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34130050-2	chr17	34129931	34130131	+	797.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360530, intron 1 of 5)	RMER19A|LTR|ERVK	4513.0	NM_001360530	14998.0	Mm.16373	NM_010386	ENSMUSG00000037649	H2-DMa	H-2Ma|H2-Ma	histocompatibility 2, class II, locus DMa	protein-coding	2.47175906332215	3.03599250395887	2.59683283924342	1.2542840708525	2.57463130800436	2.60637859661528	1.78784130401369	1.25967441800673	-0.651225026644945	0.519554264076365	0.947641799425091
Merged-chr2-128711776-1	chr2	128711676	128711876	+	593.0	f1_balb.idr	intron (NM_008587, intron 1 of 18)	B3A|SINE|B2	12861.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-19613389-3	chr10	19613339	19613539	+	925.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE-int|LTR|ERVL-MaLR	-8589.0	NM_178258	237310.0	Mm.331979	NM_178258	ENSMUSG00000039760	Il22ra2	CRF2-10|CRF2-s1|CRF2X|Il-22bp	interleukin 22 receptor, alpha 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-28166589-2	chr4	28166489	28166689	+	586.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B2-int|LTR|ERVL-MaLR	-646542.0	NM_001290434	13841.0	Mm.257266	NM_010141	ENSMUSG00000028289	Epha7	Cek11|Ebk|Ehk3|Hek11|Mdk1	Eph receptor A7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5933566-2	chr17	5933466	5933666	+	594.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-7714.0	NM_001113353	20975.0	Mm.236068	NM_011523	ENSMUSG00000023805	Synj2	AI481647|SJ2|mKIAA0348	synaptojanin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-17883248-2	chr17	17883148	17883348	+	567.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013521, intron 1 of 1)	intron (NM_013521, intron 1 of 1)	691.0	NM_013521	14293.0	Mm.56951	NM_013521	ENSMUSG00000045551	Fpr1	FPR|LXA4R|fMLF-R	formyl peptide receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-113659423-2	chr6	113659323	113659523	+	568.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 2 of 11)	ID_B1|SINE|B4	20956.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-138000891-2	chr4	138000772	138000972	+	584.166626	f0_balb.idr|f1_balb.idr	intron (NM_001355699, intron 1 of 32)	intron (NM_001355699, intron 1 of 32)	3047.0	NM_001355700	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	1.93271545176009	3.07129294836249	1.23742408766367	1.20348992800121	2.7459046958835	2.73595314673705	1.53482676874476	3.15470444743033	1.08775812790333	0.29058681843081	0.79539026179457
Merged-chr8-13504410-4	chr8	13504303	13504503	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9868.0	NM_019521	14456.0	Mm.3982	NM_019521	ENSMUSG00000031451	Gas6	Gas-6	growth arrest specific 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141168834-4	chr7	141168727	141168927	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001172101)	promoter-TSS (NM_001172101)	109.0	NM_145135	107702.0	Mm.197493	NM_145135	ENSMUSG00000038650	Rnh1	AW546468|C80305|RNH	ribonuclease/angiogenin inhibitor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-125370293-4	chr10	125370199	125370399	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-41336.0	NM_001358496	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-51991824-4	chr15	51991715	51991915	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009009)	promoter-TSS (NM_009009)	-55.0	NM_009009	19357.0	Mm.182628	NM_009009	ENSMUSG00000022314	Rad21	SCC1|mKIAA0078	RAD21 cohesin complex component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-22143318-4	chr9	22143219	22143419	+	848.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7573.0	NM_001102405	11433.0	Mm.46354	NM_007388	ENSMUSG00000001348	Acp5	TRACP|TRAP	acid phosphatase 5, tartrate resistant	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-66436775-4	chr18	66436672	66436872	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21832.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	3.39720260118666	3.73061102141174	4.46122704870491	4.0520404667611	3.93891802191684	3.21141134628841	4.13454608627443	4.32375071344221	0.00391013183713543	0.993688054129075	0.998431161219273
Merged-chr10-8785066-3	chr10	8784948	8785148	+	686.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 6 of 19)	intron (NM_175155, intron 6 of 19)	101022.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-142575053-2	chr3	142574953	142575153	+	724.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	14697.0	NM_001289493	55932.0	Mm.439718	NM_018734	ENSMUSG00000028268	Gbp3	AW228655|GBP-3|GBP-4|Gbp4	guanylate binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-151139723-2	chr4	151139623	151139823	+	834.700012	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081557, intron 9 of 23)	intron (NM_001081557, intron 9 of 23)	50153.0	NM_001308446	105704528.0	Mm.415128	NM_001308446	ENSMUSG00000078491	Gm13090	-	predicted gene 13090	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-110387322-2	chr9	110387222	110387422	+	580.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081043, exon 20 of 25)	exon (NM_001081043, exon 20 of 25)	20888.0	NM_001081043	104831.0	Mm.335477	NM_001081043	ENSMUSG00000036057	Ptpn23	AI462446|PTP-TD14	protein tyrosine phosphatase, non-receptor type 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-39594362-2	chr1	39594262	39594462	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17015.0	NM_001033135	67702.0	Mm.28614	NM_001033135	ENSMUSG00000048234	Rnf149	1600023E10Rik|AV037261|C76763|Gm15832|Greul4	ring finger protein 149	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116656867-2	chr11	116656767	116656967	+	772.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163318)	promoter-TSS (NM_001163318)	-241.0	NM_001163318	100038570.0	Mm.390349	NM_001163318	ENSMUSG00000075410	Prcd	Gm11744	photoreceptor disc component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-98105462-4	chr6	98105376	98105576	+	853.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	113693.0	NM_008601	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97803837-4	chr6	97803749	97803949	+	944.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3209.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-112627122-2	chr12	112627022	112627222	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007421, intron 1 of 12)	intron (NM_007421, intron 1 of 12)	7075.0	NM_007421	11565.0	Mm.3440	NM_007421	ENSMUSG00000011148	Adssl1	AI528595|Adss|Adss1	adenylosuccinate synthetase like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-21066629-4	chr19	21066531	21066731	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38079.0	NR_126458	75354.0	Mm.243873	NR_126458		4930554I06Rik	-	RIKEN cDNA 4930554I06 gene	ncRNA	4.36004214495336	3.79757085290392	4.45626061593346	4.53630315683053	5.07687455587726	4.84149218386363	4.43370166110121	5.96862642923669	1.08267932413666	0.00834408197862018	0.0955878060911696
Merged-chr12-111894235-3	chr12	111894136	111894336	+	692.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011625, intron 1 of 16)	L2c|LINE|L2	13819.0	NM_011625	21981.0	Mm.313076	NM_011625	ENSMUSG00000021285	Ppp1r13b	AI449786|ASPP1|AW545810|Tp53bp2|Trp53bp2|p85	protein phosphatase 1, regulatory (inhibitor) subunit 13B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141998510-2	chr4	141998410	141998610	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177868, intron 2 of 31)	MLT1K|LTR|ERVL-MaLR	13141.0	NM_177868	329977.0	Mm.252019	NM_028429	ENSMUSG00000051435	Fhad1	2900090M10Rik|B230311F11	forkhead-associated (FHA) phosphopeptide binding domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84416015-8	chr8	84415907	84416107	+	869.0416869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252060, intron 1 of 47)	(TCC)n|Simple_repeat|Simple_repeat	643.0	NM_001252061	12286.0	Mm.334658	NM_007578	ENSMUSG00000034656	Cacna1a	APCA|BI|Caca1a|Cacnl1a4|Cav2.1|Ccha1a|EA2|FHM|HPCA|MHP|MHP1|SCA6|alpha1A|la|nmf352|rkr|smrl|tg	calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	protein-coding	1.78063214334692	1.85284896461269	1.16157399289264	1.13981415932828	2.44455173695039	1.86704355951371	2.08821780048647	2.8221791767032	2.28197864924441	0.0306928395932793	0.241213552035043
Merged-chr7-96970580-2	chr7	96970480	96970680	+	851.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153591, intron 4 of 13)	intron (NM_153591, intron 4 of 13)	19053.0	NM_153591	244141.0	Mm.274864	NM_153591	ENSMUSG00000018995	Nars2	AI875199	asparaginyl-tRNA synthetase 2 (mitochondrial)(putative)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-43553318-4	chr7	43553214	43553414	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M3|LINE|L1	-9056.0	NM_001008549	210104.0	Mm.333821	NM_001008549	ENSMUSG00000056592	Zfp658	-	zinc finger protein 658	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-41019870-4	chr8	41019738	41019938	+	974.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015457, intron 2 of 2)	B3|SINE|B2	2370.0	NR_015457	78849.0	Mm.440930	NR_015457	ENSMUSG00000084960	B430010I23Rik	-	RIKEN cDNA B430010I23 gene	ncRNA	2.67292488933734	3.11476668159017	2.54815610701648	3.60804419559064	2.59375477314167	3.68090367395152	1.53104670446002	2.48541093436166	-0.44350403281582	0.577190247558979	0.96585843058813
Merged-chr11-58328297-2	chr11	58328175	58328375	+	649.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001256520, intron 1 of 2)	MER67B|LTR|ERV1	2064.0	NM_001256520	319475.0	Mm.72124	NM_178761	ENSMUSG00000049755	Zfp672	4930488P06Rik|4930511N19Rik|Znf672	zinc finger protein 672	protein-coding	1.37142438533909	1.6725016701123	1.86426735550855	1.06875548125281	1.91204846994623	1.68449542616709	1.63041898449882	1.82026894199535	0.780716407846597	0.482364530373787	0.930060200507932
Merged-chr2-36235470-2	chr2	36235370	36235570	+	585.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008969, intron 2 of 10)	intron (NM_008969, intron 2 of 10)	5044.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71546957-1	chr8	71546857	71547057	+	826.0	f1_balb.idr	intron (NM_028617, intron 6 of 8)	intron (NM_028617, intron 6 of 8)	4027.0	NM_028617	73711.0	Mm.307770	NM_028617	ENSMUSG00000031813	Mvb12a	1110012M11Rik|Fam125a	multivesicular body subunit 12A	protein-coding	-2.18138529563533	-2.15523716995652	-2.1631445789866	-2.16963996020037	-2.05513010215571	-2.15352360143315	-2.16135451490766	-2.16847729006863	0.759018020146679	0.829933115115583	1
Merged-chr13-12882221-2	chr13	12882121	12882321	+	691.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-82142.0	NM_011118	18812.0	Mm.457984	NM_011118	ENSMUSG00000056457	Prl2c3	Ghd1|MRP-2|MRP-3|Mrpplf3|PLF-2|PLF-3|Plf2|Prl2c4|mrp/plf3	prolactin family 2, subfamily c, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-48372383-4	chr5	48372285	48372485	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025755)	promoter-TSS (NM_025755)	-7.0	NM_025755	66768.0	Mm.29409	NM_025755	ENSMUSG00000029089	Pacrgl	4933428G09Rik	PARK2 co-regulated-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-81108657-4	chr13	81108575	81108775	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 87 of 89)	intron (NM_054053, intron 87 of 89)	144601.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-166204326-2	chr1	166204226	166204426	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175296, intron 10 of 11)	intron (NM_175296, intron 10 of 11)	34418.0	NM_175296	98558.0	Mm.26189	NM_175296	ENSMUSG00000040629	Mael	4933405K18Rik|AU019877	maelstrom spermatogenic transposon silencer	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129398454-4	chr2	129398363	129398563	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR16|LTR|ERVK	-27324.0	NM_008361	16176.0	Mm.222830	NM_008361	ENSMUSG00000027398	Il1b	IL-1beta|Il-1b	interleukin 1 beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-16335464-4	chr2	16335371	16335571	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20833.0	NM_026162	67448.0	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-105720307-2	chr3	105720207	105720407	+	654.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_175398, exon 2 of 2)	3' UTR (NM_175398, exon 2 of 2)	14849.0	NM_001163356	109050.0	Mm.212591	NM_175398	ENSMUSG00000048458	Fam212b	6530418L21Rik|inka2	family with sequence similarity 212, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-152124648-3	chr4	152124543	152124743	+	769.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207689, intron 7 of 9)	ORR1A3-int|LTR|ERVL-MaLR	4282.0	NM_019585	56226.0	Mm.264215	NM_019585	ENSMUSG00000028943	Espn	je	espin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-84548751-3	chr7	84548685	84548885	+	804.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045098, intron 1 of 2)	intron (NR_045098, intron 1 of 2)	19831.0	NR_045098	100039239.0	Mm.44882	NR_045098		Gm2115	C77713	predicted gene 2115	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-62253999-4	chr18	62253878	62254078	+	889.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70226.0	NM_008313	15562.0	Mm.20440	NM_008313	ENSMUSG00000026322	Htr4	5-HT-4|5-HT4|5-HT<4L>|5HTR4	5 hydroxytryptamine (serotonin) receptor 4	protein-coding	2.82753607628707	3.40934795270318	3.22585253059661	2.31830571538324	2.67569953272398	3.19480253543867	2.40679298517807	1.76929527052162	-0.735425627062243	0.33063453773945	0.83197671091297
Merged-chr3-89715394-2	chr3	89715294	89715494	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001357958, exon 1 of 15)	exon (NM_001357958, exon 1 of 15)	156.0	NM_001357958	56417.0	Mm.316628	NM_019655	ENSMUSG00000027951	Adar	AV242451|Adar1|Adar1p110|Adar1p150|DRADA|mZaADAR	adenosine deaminase, RNA-specific	protein-coding	1.42648144443369	0.78132877563145	0.766098594417679	1.13161818735028	1.44054105938677	1.38526396227856	0.769487553302854	2.02987479698451	1.59495262410974	0.261121338039235	0.762408459680314
Merged-chr4-123566441-1	chr4	123566341	123566541	+	679.0	f0_balb.idr	intron (NM_001199137, intron 1 of 92)	intron (NM_001199137, intron 1 of 92)	-49979.0	NR_105824	102465214.0		NR_105824	ENSMUSG00000099005	Mir6398	Gm27657|mmu-mir-6398	microRNA 6398	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90544920-2	chr2	90544820	90545020	+	687.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	35727.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-67713575-2	chr14	67713475	67713675	+	559.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175384, intron 3 of 14)	intron (NM_175384, intron 3 of 14)	2035.0	NM_001110162	108912.0	Mm.33831	NM_175384	ENSMUSG00000048922	Cdca2	2610311M19Rik|AI586158	cell division cycle associated 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-47216923-3	chr19	47216816	47217016	+	844.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021360, intron 1 of 5)	ID_B1|SINE|B4	-11927.0	NM_001163480	18011.0	Mm.313651	NM_021360	ENSMUSG00000006435	Neurl1a	2410129E16Rik|AI450910|AI481072|Neu1|Neur1|Neurl|Neurl1|Nlz|Rnf67	neuralized E3 ubiquitin protein ligase 1A	protein-coding	3.09361393125058	1.46489896725212	1.94578887461792	1.64977914937472	3.05162028970022	3.75576603523554	2.4991283998086	3.63238771812949	1.94368814992962	0.0190166047364267	0.173638678559854
Merged-chr5-136531886-2	chr5	136531786	136531986	+	563.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291238, intron 1 of 22)	intron (NM_001291238, intron 1 of 22)	34095.0	NM_001291239	13047.0	Mm.320317	NM_009986	ENSMUSG00000029705	Cux1	CDP|Cutl1|Cux|Cux-1	cut-like homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-184563081-4	chr1	184562977	184563177	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5386.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152594880-4	chr1	152594774	152594974	+	998.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346119, intron 2 of 17)	intron (NM_001346119, intron 2 of 17)	30343.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44072918-3	chr7	44072843	44073043	+	632.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20653.0	NM_020268	16619.0	Mm.445911	NM_020268	ENSMUSG00000063177	Klk1b27	Gk27|Klk21l|Klk27|mGK-27	kallikrein 1-related peptidase b27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-13678073-4	chr6	13677962	13678162	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175312)	promoter-TSS (NM_175312)	-96.0	NM_175312	101148.0	Mm.354863	NM_175312	ENSMUSG00000042742	Bmt2	AI666701|B630005N14Rik	base methyltransferase of 25S rRNA 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-126609841-2	chr2	126609741	126609941	+	977.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008230, intron 2 of 11)	MuRRS-int|LTR|ERV1	8837.0	NM_008230	15186.0	Mm.18603	NM_008230	ENSMUSG00000027360	Hdc	AW108189|Hdc-a|Hdc-c|Hdc-e|Hdc-s	histidine decarboxylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-116161670-2	chr7	116161593	116161793	+	782.5	f0_balb.idr|f1_c57bl6.idr	intron (NM_001305189, intron 8 of 20)	intron (NM_001305189, intron 8 of 20)	27911.0	NM_001305190	233765.0	Mm.3741	NM_172743	ENSMUSG00000045659	Plekha7	A430081P20Rik|AI414265	pleckstrin homology domain containing, family A member 7	protein-coding	3.28172356247941	2.56818230800382	3.17433996128621	2.89841664669408	3.94944036560974	2.21141032744853	2.32967209297967	3.18457821652117	0.221851054110038	0.758086977066666	0.998431161219273
Merged-chr11-101986566-2	chr11	101986470	101986670	+	759.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029287)	promoter-TSS (NM_029287)	-486.0	NM_029287	75437.0	Mm.108632	NM_029287	ENSMUSG00000010841	1700006E09Rik	Cfap97d1	RIKEN cDNA 1700006E09 gene	protein-coding	-1.53362919331644	-1.50201671710775	-1.51157659084044	-1.08120497225282	-1.53141005593807	-1.49994505258991	-1.50941244497383	-1.51802371459528	-1.94474658522739	0.577200604274218	1
Merged-chr15-84120786-3	chr15	84120677	84120877	+	759.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029427, intron 2 of 9)	intron (NM_029427, intron 2 of 9)	2398.0	NM_029427	75772.0	Mm.159565	NM_029427	ENSMUSG00000018868	Pnpla5	4833426H19Rik|GS2L	patatin-like phospholipase domain containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-164938568-2	chr2	164938468	164938668	+	616.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9651.0	NM_013599	17395.0	Mm.4406	NM_013599	ENSMUSG00000017737	Mmp9	AW743869|B/MMP9|Clg4b|Gel B|MMP-9|pro-MMP-9	matrix metallopeptidase 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-69888055-2	chr8	69887942	69888142	+	582.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026818)	promoter-TSS (NM_026818)	-650.0	NM_026818	68709.0	Mm.334584	NM_026818	ENSMUSG00000044006	Cilp2	1110031K21Rik|AA407300|CLIP-2	cartilage intermediate layer protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-75228394-2	chr10	75228294	75228494	+	767.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145826, intron 2 of 18)	ORR1D1|LTR|ERVL-MaLR	16004.0	NM_001145826	74392.0	Mm.27716	NM_153406	ENSMUSG00000033444	Specc1l	4930470P14Rik|4932439K10Rik|9530057A13Rik|AI317249|Cytsa|mKIAA0376	sperm antigen with calponin homology and coiled-coil domains 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-14053780-2	chr9	14053680	14053880	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-222521.0	NM_030261	75747.0	Mm.325126	NM_030261	ENSMUSG00000032009	Sesn3	5630400E15Rik|BC003348|SEST3	sestrin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-50865552-1	chr14	50865452	50865652	+	590.0	f0_balb.idr	intron (NM_009351, intron 4 of 54)	MTD|LTR|ERVL-MaLR	5002.0	NM_009351	21745.0	Mm.318736	NM_009351	ENSMUSG00000006281	Tep1	Tp1	telomerase associated protein 1	protein-coding	2.53904711038852	2.00791749334494	1.79182657388888	1.15637960517339	2.20625688789918	2.38874933420869	1.1838605920736	1.89220157172191	0.0435831396480882	0.968271146359956	0.998431161219273
Merged-chr8-8704995-4	chr8	8704902	8705102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-14465.0	NM_176849	234023.0	Mm.251655	NM_176849	ENSMUSG00000040459	Arglu1	9430010O03Rik|C130008N12	arginine and glutamate rich 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-8102763-4	chr14	8102634	8102834	+	922.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360314, intron 1 of 19)	intron (NM_001360314, intron 1 of 19)	4523.0	NM_001360315	218699.0	Mm.29515	NM_145458	ENSMUSG00000033885	Pxk	C230080L11Rik|D14Ertd813e|Monaka|Slob	PX domain containing serine/threonine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-143992752-4	chr1	143992760	143992960	+	971.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MYSERV6-int|LTR|ERVK	11289.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-35111243-3	chr2	35111132	35111332	+	747.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012018, intron 1 of 43)	intron (NM_012018, intron 1 of 43)	1740.0	NM_012018	26920.0	Mm.231332	NM_012018	ENSMUSG00000057110	Cntrl	6720467O09Rik|AA968343|Cep1|Cep110|IB3/5|Ma2a8|b2b1468.1Clo|b2b1468Clo	centriolin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-39488513-2	chr18	39488419	39488619	+	629.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1274.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	-1.04518593973429	-0.851491872937916	-1.0376310782555	-1.04206822362877	-0.67414708568584	-1.0240976315171	-0.863893612029227	-1.04173905783627	1.58164331352486	0.595576128577082	1
Merged-chr10-40189863-4	chr10	40189780	40189980	+	831.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR6-int|LTR|ERV1	-47626.0	NM_001114332	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-85116446-2	chr16	85116346	85116546	+	653.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001198825, intron 2 of 15)	intron (NM_001198825, intron 2 of 15)	57261.0	NM_001198825	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-12981878-2	chr7	12981778	12981978	+	901.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001168561, exon 4 of 5)	exon (NM_001168561, exon 4 of 5)	4030.0	NM_001168561	269870.0	Mm.62083	NM_175558	ENSMUSG00000033961	Zfp446	A630035I11Rik|A930031C22|AA120513|AV306632	zinc finger protein 446	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-97081609-4	chr7	97081465	97081665	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010248)	promoter-TSS (NM_010248)	-186.0	NM_001162477	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-14572122-3	chr3	14572015	14572215	+	817.144409	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028915, intron 18 of 18)	intron (NM_028915, intron 18 of 18)	-6556.0	NM_007892	13559.0	Mm.153415	NM_007892	ENSMUSG00000027552	E2f5	AU024671|E2F-5	E2F transcription factor 5	protein-coding	1.2635078215807	0.948968734148293	0.926338848006433	0.908299663000209	2.19031793488848	2.1415777425171	1.55945724612893	2.24290356552554	4.01497239835652	0.00373856525879746	0.0533568270916557
Merged-chr14-123696071-2	chr14	123695971	123696171	+	663.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145467, intron 2 of 10)	L1Md_A|LINE|L1	35931.0	NM_145467	223272.0	Mm.383176	NM_145467	ENSMUSG00000032925	Itgbl1	B930011D01Rik	integrin, beta-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-89354870-2	chr12	89354770	89354970	+	815.766663	f1_balb.idr|f1_c57bl6.idr	intron (NM_001198587, intron 9 of 19)	intron (NM_001198587, intron 9 of 19)	401480.0	NM_172544	18191.0	Mm.425766	NM_172544	ENSMUSG00000066392	Nrxn3	-	neurexin III	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-143903806-3	chr2	143903731	143903931	+	831.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11500.0	NM_019771	56431.0	Mm.28919	NM_019771	ENSMUSG00000015932	Dstn	2610043P17Rik|ADF|AU042046|Dsn|corn1|sid23p	destrin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-21127748-1	chr5	21127648	21127848	+	627.0	f1_c57bl6.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-48531.0	NR_153366	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-5575005-2	chr3	5574905	5575105	+	557.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008994, intron 1 of 5)	intron (NM_008994, intron 1 of 5)	1243.0	NM_001163301	19302.0	Mm.132336	NM_008994	ENSMUSG00000040374	Pex2	D3Ertd138e|PAF-1|PMP35|Pxmp3	peroxisomal biogenesis factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19082274-2	chr7	19082174	19082374	+	729.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_010058, intron 4 of 4)	intron (NM_010058, intron 4 of 4)	-1575.0	NR_126095	13400.0	Mm.6529	NM_032418	ENSMUSG00000030409	Dmpk	DM|DMK|Dm15|MDPK|MT-PK	dystrophia myotonica-protein kinase	protein-coding	0.130910713990612	0.00447026283969398	-0.000941545705378383	0.709427100565628	0.558002714857166	0.00569002151425094	0.18057388170741	-0.00438823332799138	-0.31158916557603	0.883071807767089	1
Merged-chr4-59036292-2	chr4	59036192	59036392	+	603.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025277, intron 1 of 2)	intron (NM_025277, intron 1 of 2)	1136.0	NM_025277	14700.0	Mm.41780	NM_025277	ENSMUSG00000038607	Gng10	AV006524	guanine nucleotide binding protein (G protein), gamma 10	protein-coding	0.950124456658115	1.32827570415358	0.875456558510626	1.33198984655401	0.827597387495268	0.906329682959365	1.0362348897224	1.00423017450893	-0.983245651732689	0.464555733391166	0.922521920152562
Merged-chr10-17925343-2	chr10	17925264	17925464	+	666.5	f0_balb.idr|f1_c57bl6.idr	intron (NM_001033432, intron 1 of 3)	intron (NM_001033432, intron 1 of 3)	22703.0	NM_001033432	380629.0	Mm.276430	NM_001033432	ENSMUSG00000039879	Heca	Gm869|HDC|HDCL	hdc homolog, cell cycle regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-9976392-4	chr19	9976305	9976505	+	963.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4195.0	NR_073181	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	3.48525722706692	2.9662311263263	2.11722827910657	3.07195977091011	3.4611528412008	2.98818952559889	2.1342219881041	3.17002536740214	0.0427681425367515	0.952115657538178	0.998431161219273
Merged-chr16-91518779-1	chr16	91518679	91518879	+	550.0	f1_c57bl6.idr	Intergenic	B4|SINE|B4	8765.0	NR_105786	102465190.0		NR_105786	ENSMUSG00000099308	Mir6367	Gm27467|mmu-mir-6367	microRNA 6367	ncRNA	0.819723560583916	2.68062673213157	2.02254327934257	0.862890742049461	1.28098526003519	0.924247974212158	2.73931342069564	1.35967859038719	-0.119990988787981	0.926362821734351	0.998431161219273
Merged-chr8-124746320-1	chr8	124746220	124746420	+	792.5	f1_balb.idr	intron (NM_001081120, intron 1 of 1)	intron (NM_001081120, intron 1 of 1)	5489.0	NM_001081120	69627.0	Mm.271600	NM_001081120	ENSMUSG00000043068	Fam89a	2310031A18Rik	family with sequence similarity 89, member A	protein-coding	1.67134399842764	1.17566649190666	1.41607515830429	1.11223079474938	2.28298317839054	2.36305699844143	2.67654660742511	3.104004820821	3.5013075401866	0.00114810107583841	0.0215907785390427
Merged-chr9-118797586-2	chr9	118797486	118797686	+	627.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 3 of 13)	intron (NM_001113514, intron 3 of 13)	85894.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-59355435-2	chr17	59355335	59355535	+	592.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-342113.0	NM_026497	67993.0	Mm.36507	NM_026497	ENSMUSG00000024228	Nudt12	0610016O18Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-121827589-2	chr5	121827489	121827689	+	566.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001306126, intron 3 of 8)	ID_B1|SINE|B4	-8316.0	NR_105998	102465624.0		NR_105998	ENSMUSG00000099063	Mir7031	Gm27859|mmu-mir-7031	microRNA 7031	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-31104756-3	chr6	31104644	31104844	+	864.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110471, intron 3 of 3)	intron (NR_110471, intron 3 of 3)	-41651.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45466797-4	chr7	45466691	45466891	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_007527, exon 1 of 6)	5' UTR (NM_007527, exon 1 of 6)	107.0	NM_007527	12028.0	Mm.19904	NM_007527	ENSMUSG00000003873	Bax	-	BCL2-associated X protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-115712982-4	chr3	115712889	115713089	+	941.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_007901, exon 2 of 2)	5' UTR (NM_007901, exon 2 of 2)	2066.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-8995408-2	chr3	8995315	8995515	+	678.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	8789.0	NM_001357073	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	0.570452335490903	0.944477057683069	0.191948149151222	0.840651989629395	0.332968995542905	0.200359567869232	0.193465378349169	0.187559469456334	-3.41018765690845	0.0831386173985524	1
Merged-chr10-30200569-4	chr10	30200479	30200679	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001109747)	promoter-TSS (NM_001109747)	-39.0	NM_001109747	66311.0	Mm.251779	NM_001109747	ENSMUSG00000075266	Cenpw	2610036L11Rik|Cug2	centromere protein W	protein-coding	4.72535971420669	5.33087123145537	5.04196285070308	3.74498177035024	5.37681963213963	5.15402027851622	4.26695354230385	4.52646232720571	0.106372925860825	0.798123207085253	0.998431161219273
Merged-chr17-67304449-4	chr17	67304336	67304536	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	50023.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	6.19838412860301	5.62884248090299	6.23548109068818	6.1657642632812	5.55879284227416	5.96524904818791	6.16491397343942	6.13996512884047	-0.121635204720678	0.620878568690645	0.979324117529246
Merged-chr19-5662167-2	chr19	5662067	5662267	+	715.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164480, intron 1 of 16)	B1_Mus1|SINE|Alu	1540.0	NM_001164482	20469.0	Mm.3072	NM_011379	ENSMUSG00000056917	Sipa1	Spa1	signal-induced proliferation associated gene 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127944868-2	chr7	127944768	127944968	+	592.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_001319147, exon 5 of 15)	exon (NM_001319147, exon 5 of 15)	1857.0	NM_001319147	77613.0	Mm.334253	NM_001081374	ENSMUSG00000070371	Prss36	C330007D15Rik	protease, serine 36	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-56759950-1	chr19	56759850	56760050	+	542.0	f1_balb.idr	Intergenic	Intergenic	37578.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85960057-2	chr12	85959957	85960157	+	557.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347395, intron 29 of 32)	intron (NM_001347395, intron 29 of 32)	118984.0	NM_009368	21809.0	Mm.3992	NM_009368	ENSMUSG00000021253	Tgfb3	TGF-beta-3|Tgfb-3	transforming growth factor, beta 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-193894279-4	chr1	193894180	193894380	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	328479.0	NR_040477	74942.0	Mm.60689	NR_040477	ENSMUSG00000103692	4930503O07Rik	-	RIKEN cDNA 4930503O07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-23432100-2	chr5	23432000	23432200	+	696.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040469, exon 1 of 1)	non-coding (NR_040469, exon 1 of 1)	2253.0	NR_040469	269630.0	Mm.425231	NR_040469	ENSMUSG00000073147	5031425E22Rik	-	RIKEN cDNA 5031425E22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-136806730-2	chr6	136806652	136806852	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1496.0	NM_177688	232440.0	Mm.154564	NM_177688	ENSMUSG00000060032	H2afj	E130307C13	H2A histone family, member J	protein-coding	0.593360668762469	1.21038816533005	0.311553000033162	0.304831690276488	0.600972017943448	0.322120987134475	0.313464614710168	1.10166968805027	-0.191648685106205	0.917428565019752	1
Merged-chr19-5919101-2	chr19	5919001	5919201	+	856.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026772, intron 1 of 1)	PB1D10|SINE|Alu	5715.0	NM_026772	104252.0	Mm.491103	NM_026772	ENSMUSG00000045664	Cdc42ep2	1110008C05Rik|Borg1|Cep2|D19Bwg1013e	CDC42 effector protein (Rho GTPase binding) 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-92281203-2	chr5	92281103	92281303	+	950.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3022.0	NM_025972	67111.0	Mm.28890	NM_025972	ENSMUSG00000029413	Naaa	2210023K21Rik|3830414F09Rik|Asahl	N-acylethanolamine acid amidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-23023339-3	chr11	23023247	23023447	+	711.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028672, intron 3 of 3)	intron (NM_028672, intron 3 of 3)	9960.0	NM_028672	73873.0	Mm.252406	NM_028672	ENSMUSG00000049811	Fam161a	4930430E16Rik	family with sequence similarity 161, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-132879599-2	chr2	132879499	132879699	+	648.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_177303, exon 2 of 5)	exon (NM_177303, exon 2 of 5)	1263.0	NM_177303	320974.0	Mm.357342	NM_177303	ENSMUSG00000043110	Lrrn4	B430119L13Rik|Nlrr4	leucine rich repeat neuronal 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-8980971-4	chr19	8980875	8981075	+	982.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8309.0	NR_104460	66395.0	Mm.203866	NM_009643	ENSMUSG00000069833	Ahnak	DY6	AHNAK nucleoprotein (desmoyokin)	protein-coding	1.53662269611631	1.41729212604437	2.6963518405556	1.12770951356343	1.77736176151664	0.935702326355157	1.70256468906907	0.891705554175151	-1.30623678002037	0.290933493037392	0.795742750399449
Merged-chr15-97213298-4	chr15	97213206	97213406	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33801.0	NM_172293	239647.0	Mm.130036	NM_172293	ENSMUSG00000044250	Pced1b	Fam113b	PC-esterase domain containing 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84857341-3	chr8	84857233	84857433	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152751, intron 1 of 12)	intron (NR_152751, intron 1 of 12)	347.0	NM_025648	66590.0	Mm.292517	NM_025648	ENSMUSG00000003808	Farsa	0610012A19Rik|Farsla|pheRS	phenylalanyl-tRNA synthetase, alpha subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-51220222-1	chr14	51220122	51220322	+	816.5	f0_balb.idr	Intergenic	Intergenic	16527.0	NM_017389	503847.0	Mm.377124	NM_017389	ENSMUSG00000050766	Ear14	-	eosinophil-associated, ribonuclease A family, member 14	protein-coding	1.56037123797337	1.35504584973961	0.928843883242311	1.41789087154493	1.82999780627015	1.78309418155925	1.47124745003317	0.918870424382103	0.770599318799677	0.544447398070711	0.955840500234695
Merged-chr10-11148043-2	chr10	11147943	11148143	+	888.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger1|DNA|TcMar-Tigger	-1387.0	NM_001077707	268281.0	Mm.133101	NM_172937	ENSMUSG00000090112	Shprh	2610103K11Rik|AA450458|AU024614|BC006883|D230017O13Rik|E130018M05	SNF2 histone linker PHD RING helicase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-20719179-2	chr14	20719079	20719279	+	858.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001252081, exon 18 of 26)	exon (NM_001252081, exon 18 of 26)	11627.0	NM_001252082	268721.0	Mm.275082	NM_027996	ENSMUSG00000021819	Zswim8	2310021P13Rik|4832404P21Rik|Kiaa0913|mKIAA0913	zinc finger SWIM-type containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-77760242-2	chr15	77760142	77760342	+	631.099976	f1_balb.idr|f1_c57bl6.idr	TTS (NM_022410)	TTS (NM_022410)	-3232.0	NM_001357895	239552.0	Mm.125650	NM_001081970	ENSMUSG00000056656	Apol8	9830006J20Rik|APOL-II|Apol2	apolipoprotein L 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-98165192-2	chr7	98165092	98165292	+	921.7999880000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_007602, intron 1 of 12)	intron (NM_007602, intron 1 of 12)	-2850.0	NM_001301250	12337.0	Mm.326847	NM_007602	ENSMUSG00000035547	Capn5	nCL-3	calpain 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-90364742-4	chr5	90364638	90364838	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198010, intron 1 of 32)	intron (NM_198010, intron 1 of 32)	1447.0	NM_030886	81702.0	Mm.245522	NM_030886	ENSMUSG00000055204	Ankrd17	4933425K22Rik|A130069E23Rik|A930008M01|AA407558|AA516750|AU040470|Foe|Gtar|Mask|mKIAA0697	ankyrin repeat domain 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-24910716-2	chr2	24910616	24910816	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001012518, intron 1 of 26)	B3A|SINE|B2	8893.0	NM_172545	77683.0	Mm.24176	NM_172545	ENSMUSG00000036893	Ehmt1	9230102N17Rik|D330003E03|Eu-HMTase1|GLP|GLP1|KMT1D|mKIAA1876	euchromatic histone methyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-75689847-2	chr12	75689747	75689947	+	569.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A2|LTR|ERVL-MaLR	-20310.0	NM_028203	72338.0	Mm.341719	NM_028203	ENSMUSG00000045690	Wdr89	2600001A11Rik	WD repeat domain 89	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97815974-3	chr6	97815902	97816102	+	968.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113198, intron 1 of 9)	intron (NM_001113198, intron 1 of 9)	8944.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-125784068-1	chr2	125783968	125784168	+	1000.0	f1_balb.idr	Intergenic	Intergenic	-1198.0	NM_177608	70354.0	Mm.138091	NM_133725	ENSMUSG00000035093	Secisbp2l	3110001I20Rik|AI504340|C630011I23	SECIS binding protein 2-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-81064435-4	chr17	81064385	81064585	+	855.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028138, intron 1 of 9)	intron (NM_028138, intron 1 of 9)	600.0	NM_028138	72167.0	Mm.273257	NM_028138	ENSMUSG00000024246	Thumpd2	2810025A12Rik	THUMP domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-105157777-2	chr5	105157677	105157877	+	648.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18191.0	NM_001359080	17472.0	Mm.440525	NM_008620	ENSMUSG00000079363	Gbp4	AW228052|Mag-2|Mpa-2|Mpa2	guanylate binding protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120108815-2	chr8	120108715	120108915	+	725.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5337.0	NM_001163762	234797.0	Mm.101958	NM_172286	ENSMUSG00000031824	6430548M08Rik	AW049007|Kiaa0513|mKIAA0513	RIKEN cDNA 6430548M08 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-133105447-6	chr6	133105333	133105533	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001163445, exon 1 of 1)	exon (NM_001163445, exon 1 of 1)	194.0	NR_073368	381820.0	Mm.291762	NM_001163445	ENSMUSG00000072704	Smim10l1	2700089E24Rik|AI662692	small integral membrane protein 10 like 1	protein-coding	5.29598519031859	5.30108048790055	4.63813288907411	4.56227158524727	5.70253646489942	5.75753952932731	5.37613430681111	4.76791821978084	0.533223140219319	0.114630854495532	0.530743892265557
Merged-chr19-42099621-4	chr19	42099528	42099728	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145501, intron 1 of 8)	L2|LINE|L2	9193.0	NM_145501	84095.0	Mm.117037	NM_145501	ENSMUSG00000025178	Pi4k2a	Pi4k2	phosphatidylinositol 4-kinase type 2 alpha	protein-coding	5.4031190882098	4.85084579794098	5.65829582573923	5.24039435169467	5.98996619289163	6.15775220120969	6.15066523517004	6.1248120073211	0.874690321519255	0.000649986987034923	0.0138435690007899
Merged-chr14-70100852-4	chr14	70100739	70100939	+	939.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021328, intron 1 of 8)	intron (NM_021328, intron 1 of 8)	746.0	NM_001360404	57784.0	Mm.24186	NM_021328	ENSMUSG00000022089	Bin3	1700015F07Rik	bridging integrator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-28976796-2	chr2	28976696	28976896	+	560.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166705, intron 3 of 5)	intron (NM_001166705, intron 3 of 5)	-60128.0	NM_001355434	54422.0	Mm.21390	NM_019446	ENSMUSG00000026805	Barhl1	Dres115|MBH2	BarH like homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-8604437-2	chr11	8604337	8604537	+	740.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 2 of 30)	intron (NM_001083587, intron 2 of 30)	60098.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106615664-2	chr11	106615564	106615764	+	901.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2734.0	NM_198292	21763.0	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114851784-4	chr11	114851734	114851934	+	845.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_147217)	promoter-TSS (NM_147217)	-196.0	NM_147217	70355.0	Mm.242413	NM_147217	ENSMUSG00000051043	Gprc5c	1110028I06Rik|3200002M13Rik|Raig3	G protein-coupled receptor, family C, group 5, member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-81330752-4	chr16	81330652	81330852	+	862.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113208, intron 1 of 17)	intron (NM_001113208, intron 1 of 17)	130055.0	NM_010954	17968.0	Mm.433941	NM_010954	ENSMUSG00000022762	Ncam2	Ncam-2|Ocam|RNCAM	neural cell adhesion molecule 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-118477866-4	chr5	118477756	118477956	+	951.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-82863.0	NM_001347445	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-55638577-4	chr4	55638472	55638672	+	785.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-106097.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	2.61259793097391	1.40826224128136	2.18608521402548	1.59071386574378	2.84540677786102	2.42506855519335	3.08245510562029	2.38846482200375	1.43609234123633	0.105061552191975	0.505830057463611
Merged-chr11-70372659-4	chr11	70372566	70372766	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER63A|DNA|hAT-Blackjack	-20635.0	NM_009660	11687.0	Mm.4584	NM_009660	ENSMUSG00000018924	Alox15	12-LO|12/15-LO|15-LOX|Alox12l|L-12LO	arachidonate 15-lipoxygenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-31502897-3	chr6	31502801	31503001	+	819.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013791, intron 17 of 17)	intron (NM_013791, intron 17 of 17)	61036.0	NM_013723	27205.0	Mm.89918	NM_013723	ENSMUSG00000025608	Podxl	AW121214|Ly102|PC|PCLP-1|Pclp1|Podxl1	podocalyxin-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-46162221-2	chr13	46162121	46162321	+	670.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-111500.0	NM_001005422	380842.0	Mm.188108	NM_001005422	ENSMUSG00000063529	Stmnd1	Gm1574	stathmin domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-46799044-3	chr11	46798947	46799147	+	692.650024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-11752.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-84037969-1	chr17	84037869	84038069	+	660.0	f0_balb.idr	Intergenic	Intergenic	39417.0	NR_130994	78148.0	Mm.243918	NR_130994		8430430B14Rik	-	RIKEN cDNA 8430430B14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-35244417-2	chr2	35244317	35244517	+	765.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11942.0	NM_001206367	227753.0	Mm.443	NM_146120	ENSMUSG00000026879	Gsn	ADF	gelsolin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-51111426-1	chr17	51111326	51111526	+	542.0	f0_balb.idr	intron (NM_028162, intron 2 of 21)	intron (NM_028162, intron 2 of 21)	47952.0	NM_001285993	72238.0	Mm.120650	NM_028162	ENSMUSG00000023923	Tbc1d5	1600014N05Rik	TBC1 domain family, member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-121712422-4	chr5	121712318	121712518	+	860.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009125, intron 1 of 24)	CpG	809.0	NM_009125	20239.0	Mm.260900	NM_009125	ENSMUSG00000042605	Atxn2	9630045M23Rik|ATX2|AW544490|Sca2	ataxin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-98157305-3	chr3	98157190	98157390	+	755.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3344.0	NM_027665	71078.0	Mm.50711	NM_027665	ENSMUSG00000043468	Adam30	4933424D07Rik|svph4	a disintegrin and metallopeptidase domain 30	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-22012665-1	chr16	22012565	22012765	+	544.0	f1_c57bl6.idr	intron (NR_027488, intron 2 of 16)	intron (NR_027488, intron 2 of 16)	3181.0	NM_001357424	75826.0	Mm.297431	NM_029457	ENSMUSG00000022855	Senp2	2310007L05Rik|4930538C18Rik|AI646780|AW554757|Smt3ip2|SuPr-1|mKIAA1331	SUMO/sentrin specific peptidase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-11293109-4	chr19	11293027	11293227	+	954.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045317, intron 2 of 2)	intron (NR_045317, intron 2 of 2)	-9314.0	NM_183190	269063.0	Mm.268940	NM_183190	ENSMUSG00000054523	Ms4a5	-	membrane-spanning 4-domains, subfamily A, member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-181151340-4	chr1	181151263	181151463	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030131, intron 1 of 4)	intron (NM_030131, intron 1 of 4)	432.0	NM_030131	98417.0	Mm.38229	NM_030131	ENSMUSG00000062169	Cnih4	AI647760|AW050376|CNIH-4|D530030D03Rik|E430023H19Rik|HSPC163	cornichon family AMPA receptor auxiliary protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-13214063-2	chr17	13213963	13214163	+	576.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7125.0	NM_013741	27263.0	Mm.371809	NM_013741	ENSMUSG00000073458	Smok2a	Smok2	sperm motility kinase 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-3457679-2	chr6	3457579	3457779	+	704.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_178899, exon 10 of 10)	3' UTR (NM_178899, exon 10 of 10)	36819.0	NM_178899	101202.0	Mm.206911	NM_178899	ENSMUSG00000044156	Hepacam2	AI987662	HEPACAM family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-16801175-1	chr12	16801075	16801275	+	640.0	f1_c57bl6.idr	promoter-TSS (NM_015764)	promoter-TSS (NM_015764)	-289.0	NM_015764	268527.0	Mm.428062	NM_015764	ENSMUSG00000036523	Greb1	5730583K22Rik|9130004E13|AF180470|AU023194|mKIAA0575	gene regulated by estrogen in breast cancer protein	protein-coding	0.914862362183684	1.31591404046572	0.638622365343865	1.57993798332334	1.04447665197783	0.651777146352294	0.840738531336744	0.972640705637412	-1.3076167059614	0.37404529909181	0.867141279322472
Merged-chr14-47241679-2	chr14	47241560	47241760	+	777.5	f0_balb.idr|f1_balb.idr	exon (NM_172598, exon 25 of 25)	exon (NM_172598, exon 25 of 25)	35197.0	NM_001360532	218973.0	Mm.265615	NM_172598	ENSMUSG00000037572	Wdhd1	A630092E18|AND-1|D630024B06Rik	WD repeat and HMG-box DNA binding protein 1	protein-coding	1.56869541080918	1.09647392262824	1.32525600423308	1.04676334392102	1.84203271756036	2.21402730937106	2.66151964455177	2.42874335708585	3.19999100852617	0.00517676846092263	0.0685550419361476
Merged-chr3-127398517-3	chr3	127398416	127398616	+	947.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001327939, intron 1 of 45)	intron (NM_001327939, intron 1 of 45)	10542.0	NM_001327939	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	-0.893986561169655	-0.875744574464236	0.191235023404903	-0.88803707909448	-0.893095256885496	-0.872421296127899	-0.88349549973802	-0.887416687878218	-3.49744126941707	0.244297073838425	1
Merged-chr1-9798147-5	chr1	9798076	9798276	+	951.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177547)	promoter-TSS (NM_177547)	46.0	NM_177547	170755.0	Mm.336410	NM_133220	ENSMUSG00000025915	Sgk3	2510015P22Rik|A330005P07Rik|Cisk|fy|fz	serum/glucocorticoid regulated kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-169370908-3	chr1	169370817	169371017	+	930.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	160547.0	NM_023284	66977.0	Mm.151315	NM_023284	ENSMUSG00000026683	Nuf2	2410003C07Rik|AU044112|C85691|Cdca1|NUF2R	NUF2, NDC80 kinetochore complex component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-110584435-1	chr11	110584335	110584535	+	716.0	f0_balb.idr	Intergenic	B1_Mur1|SINE|Alu	105095.0	NM_001356346	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	0.421985769958257	0.470917950037766	0.45541404557455	0.443115406658382	1.63632821566099	1.13543097956532	0.458874652559855	1.89398414248648	5.02146715342882	0.00330634671541321	0.0487448230987854
Merged-chr5-135935975-2	chr5	135935873	135936073	+	640.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-1332.0	NM_018871	22628.0	Mm.233813	NM_018871	ENSMUSG00000051391	Ywhag	14-3-3gamma|D7Bwg1348e	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-79206419-4	chr2	79206308	79206508	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49018.0	NM_010576	16401.0	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-56743701-4	chr19	56743592	56743792	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21320.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-150779930-2	chr2	150779830	150780030	+	645.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6866.0	NM_153781	110078.0	Mm.222584	NM_153781	ENSMUSG00000033059	Pygb	-	brain glycogen phosphorylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191421166-4	chr1	191421064	191421264	+	871.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24123.0	NM_144880	226849.0	Mm.205569	NM_144880	ENSMUSG00000026626	Ppp2r5a	PR61alpha	protein phosphatase 2, regulatory subunit B', alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83656162-4	chr6	83656069	83656269	+	967.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016751)	promoter-TSS (NM_016751)	-53.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	0.380663142069552	0.430203619274476	0.414533173007221	1.64090667039535	0.383913458201594	0.705308927278651	0.6717729862921	1.93550292971903	0.794434592974362	0.639848481008905	0.982599433509505
Merged-chr19-12459650-2	chr19	12459548	12459748	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1131.0	NM_010821	17476.0	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	1.55656631571938	1.46688485663423	2.8305507163881	3.24093172465004	2.40123218030204	2.24265630780833	3.60793139982026	3.50046589241817	1.01158324347429	0.246851709551258	0.746081649489815
Merged-chr14-14804973-4	chr14	14804862	14805062	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15853.0	NM_001195229	674895.0	Mm.317563	NM_001034865	ENSMUSG00000042567	Nek10	Gm282	NIMA (never in mitosis gene a)- related kinase 10	protein-coding	2.1289785242828	2.1721030280907	2.65346673375691	1.60853476173649	1.94570014324951	1.50451831146879	2.33459431449843	1.19008021709759	-0.946181883420958	0.355575901508202	0.853664850644233
Merged-chr8-105933388-2	chr8	105933288	105933488	+	866.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023182, intron 1 of 6)	intron (NM_023182, intron 1 of 6)	474.0	NM_023182	109660.0	Mm.2745	NM_023182	ENSMUSG00000031896	Ctrl	0910001G08Rik|1810004D15Rik|AV005227|Ctra-1|Ctra1|chymopasin|mFLJ00366	chymotrypsin-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-69086256-2	chr17	69086156	69086356	+	803.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355732, intron 1 of 21)	intron (NM_001355732, intron 1 of 21)	10579.0	NM_001355732	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	0.79510295694722	1.18836052001281	0.395511945377534	0.388431487802417	0.804753762729509	1.20181005935557	0.397525485034737	0.389672646886956	0.0401623486874807	0.982191748031873	1
Merged-chr7-132622285-2	chr7	132622185	132622385	+	704.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029609, intron 1 of 6)	intron (NM_029609, intron 1 of 6)	11642.0	NM_029609	76429.0	Mm.276721	NM_029609	ENSMUSG00000030946	Lhpp	2310007H09Rik	phospholysine phosphohistidine inorganic pyrophosphate phosphatase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-3290054-4	chr11	3289988	3290188	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253691)	promoter-TSS (NM_001253691)	-369.0	NM_001253690	56218.0	Mm.275563	NM_019574	ENSMUSG00000020453	Patz1	8430401L15Rik|AI447519|Mazr|Patz|Zfp278	POZ (BTB) and AT hook containing zinc finger 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-112897629-4	chr12	112897535	112897735	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MD2|LINE|L1	22906.0	NR_105906	102465567.0		NR_105906	ENSMUSG00000098338	Mir6941	Gm27923|mmu-mir-6941	microRNA 6941	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-164706217-4	chr2	164706128	164706328	+	830.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7727.0	NM_030058	78239.0	Mm.160060	NM_030058	ENSMUSG00000017310	Spint4	9230105I15Rik	serine protease inhibitor, Kunitz type 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-119999697-1	chr9	119999597	119999797	+	552.0	f1_balb.idr	Intergenic	Intergenic	-14955.0	NM_153287	215418.0	Mm.491094	NM_153287	ENSMUSG00000032515	Csrnp1	4931429D10Rik|Axud1|CSRNP-1|URAX1|taip-3	cysteine-serine-rich nuclear protein 1	protein-coding	-2.18243820993087	-2.15538464093652	-2.16356586349869	-2.17028616330028	-2.18053909940952	-2.15361173587851	-2.16171381403791	-2.0403552525549	0.759018020146679	0.829933115115583	1
Merged-chr5-123884048-3	chr5	123883998	123884198	+	825.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4078.0	NM_175520	243270.0	Mm.33362	NM_175520	ENSMUSG00000049241	Hcar1	Gpr81	hydrocarboxylic acid receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-52374463-3	chr11	52374343	52374543	+	787.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011694, intron 2 of 8)	intron (NM_011694, intron 2 of 8)	13581.0	NM_011694	22333.0	Mm.3555	NM_011694	ENSMUSG00000020402	Vdac1	AL033343|Vdac5|mVDAC1|mVDAC5	voltage-dependent anion channel 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-65839325-2	chr14	65839225	65839425	+	597.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145944, intron 1 of 8)	ID_B1|SINE|B4	2023.0	NM_145944	67179.0	Mm.214576	NM_145944	ENSMUSG00000022035	Ccdc25	2610528H13Rik|NSrp70	coiled-coil domain containing 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125191724-4	chr6	125191605	125191805	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025595)	promoter-TSS (NM_025595)	-119.0	NM_146171	68298.0	Mm.257590	NM_146171	ENSMUSG00000038252	Ncapd2	2810406C15Rik|2810465G24Rik|CAP-D2|CNAP1|mKIAA0159	non-SMC condensin I complex, subunit D2	protein-coding	5.31617566141281	5.39225406733263	5.58641657032583	5.94557493050803	5.32934814865169	4.62114908160392	4.97005055170937	5.45246354166958	-0.508735546903527	0.095683524508937	0.479874936781414
Merged-chr6-71440188-4	chr6	71440133	71440333	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_024288, exon 1 of 9)	5' UTR (NM_024288, exon 1 of 9)	404.0	NM_001355745	68477.0	Mm.28474	NM_024288	ENSMUSG00000002222	Rmnd5a	1110007A06Rik|AJ237586|AW125795|Gid2|MTA.D02.090	required for meiotic nuclear division 5 homolog A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69759103-4	chr11	69758982	69759182	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291068)	promoter-TSS (NM_001291068)	-449.0	NM_001291068	20020.0	Mm.16533	NM_009089	ENSMUSG00000005198	Polr2a	220kDa|Rpb1|Rpo2-1	polymerase (RNA) II (DNA directed) polypeptide A	protein-coding	3.64651906600996	2.40435858958716	3.6697615906558	3.56784791061461	4.2710862521451	3.96760642170254	3.13021660111959	4.02322088155662	0.724554403797329	0.193602672663623	0.673158288239418
Merged-chr5-33009936-4	chr5	33009837	33010037	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8879.0	NM_011738	22629.0	Mm.332314	NM_011738	ENSMUSG00000018965	Ywhah	-	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide	protein-coding	4.97728891389304	4.40316276187703	5.43914654381061	5.79479858873894	5.78038113738209	5.8286051993378	5.10503747119622	6.3672265609243	0.669344331375799	0.0524727925168423	0.335076511202549
Merged-chr7-89086516-2	chr7	89086416	89086616	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	252271.0	NM_028343	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-117349418-1	chr13	117349318	117349518	+	683.0	f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	128845.0	NM_010330	13723.0	Mm.274926	NM_010330	ENSMUSG00000021728	Emb	AL022799|Gp70	embigin	protein-coding	0.569200105776158	0.406540830352991	0.0920633645753143	0.0889182311291651	0.0845210693846805	0.0971156540428802	0.595988911789589	0.232276258614808	-0.276963230976031	0.894984407686349	1
Merged-chr11-119488994-2	chr11	119488894	119489094	+	694.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_153849, exon 2 of 4)	non-coding (NR_153849, exon 2 of 4)	2241.0	NR_153849	78439.0	Mm.440446	NR_153849	ENSMUSG00000109408	A930037H05Rik	Gm44935	RIKEN cDNA A930037H05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-127769380-4	chr3	127769295	127769495	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027808, intron 1 of 13)	intron (NM_027808, intron 1 of 13)	11132.0	NM_027808	71481.0	Mm.158704	NM_027808	ENSMUSG00000028028	Alpk1	8430410J10Rik|LAK	alpha-kinase 1	protein-coding	7.25775815210891	7.17686367324643	6.76880326766358	6.88115139425471	7.39567748510616	6.68293713057715	7.2239269548054	7.28536536933089	0.148487780598155	0.437593088807797	0.908612234382228
Merged-chr3-133544774-2	chr3	133544674	133544874	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346736)	promoter-TSS (NM_001346736)	-384.0	NM_001346736	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-144207092-4	chr3	144206998	144207198	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1843.0	NM_010723	16911.0	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19348435-2	chr7	19348331	19348531	+	790.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_007948, exon 3 of 10)	exon (NM_007948, exon 3 of 10)	3360.0	NM_007948	13870.0	Mm.280913	NM_007948	ENSMUSG00000003549	Ercc1	Ercc-1	excision repair cross-complementing rodent repair deficiency, complementation group 1	protein-coding	0.808296387285044	0.678565756609864	0.66704387220187	1.46029737021224	0.813939973155705	1.37282972493316	1.52848760377197	1.00922040143118	1.08629788889407	0.458058163418807	0.919570891419578
Merged-chr10-41960037-4	chr10	41959927	41960127	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034858, intron 10 of 17)	intron (NM_001034858, intron 10 of 17)	58355.0	NM_001034858	213402.0	Mm.211320	NM_001034858	ENSMUSG00000071324	Armc2	2610018I05Rik	armadillo repeat containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-57393405-3	chr16	57393313	57393513	+	809.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	40136.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55764578-5	chr14	55764424	55764624	+	980.7299800000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1438.0	NM_008519	16995.0	Mm.20853	NM_008519	ENSMUSG00000046908	Ltb4r1	BLT1|BLTR|Ltb4r|mBLTR	leukotriene B4 receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-61145828-2	chr10	61145728	61145928	+	765.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_009163, intron 2 of 14)	B1_Mur1|SINE|Alu	1856.0	NM_009163	20397.0	Mm.412319	NM_009163	ENSMUSG00000020097	Sgpl1	AI428538|D10Xrf456|S1PL|Spl	sphingosine phosphate lyase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129414327-3	chr2	129414223	129414423	+	955.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43184.0	NM_008361	16176.0	Mm.222830	NM_008361	ENSMUSG00000027398	Il1b	IL-1beta|Il-1b	interleukin 1 beta	protein-coding	1.94881831414128	2.35521529044947	2.41459552137243	2.20928926132243	3.32495294493418	1.78023665057873	2.77621913145738	3.08993248994903	1.29653265404649	0.107439517574803	0.512752319754372
Merged-chr12-99447961-1	chr12	99447861	99448061	+	644.0	f0_balb.idr	intron (NM_183186, intron 1 of 5)	intron (NM_183186, intron 1 of 5)	2113.0	NM_183186	71375.0	Mm.341972	NM_183186	ENSMUSG00000033713	Foxn3	5430426H20Rik|AA589593|AW556347|Ches1|Ches1l|HTLFL1	forkhead box N3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-155075187-6	chr1	155075097	155075297	+	987.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151545, intron 3 of 6)	intron (NR_151545, intron 3 of 6)	8067.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-87621567-4	chr1	87621400	87621600	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110192, intron 1 of 26)	intron (NM_001110192, intron 1 of 26)	1188.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-10469995-2	chr16	10469895	10470095	+	601.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10077.0	NM_001302619	12265.0	Mm.249560	NM_007575	ENSMUSG00000022504	Ciita	C2ta|EG669998|Gm9475|Mhc2ta	class II transactivator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-47712795-2	chr8	47712695	47712895	+	860.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359133, intron 2 of 2)	intron (NM_001359133, intron 2 of 2)	1136.0	NM_001359133	70925.0	Mm.393807	NM_172407	ENSMUSG00000038069	Cdkn2aip	4921511I16Rik|AW208986|CARF	CDKN2A interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-54824291-5	chr13	54824183	54824383	+	837.200012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34878.0	NM_028841	74257.0	Mm.32883	NM_028841	ENSMUSG00000025875	Tspan17	2210021G21Rik|AI047581|Fbxo23|Tm4sf17	tetraspanin 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-87736848-4	chr11	87736742	87736942	+	762.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009296)	promoter-TSS (NM_009296)	-709.0	NM_001355753	20922.0	Mm.622	NM_009296	ENSMUSG00000020485	Supt4a	AL022777|Supt4h|Supt4h1|Supt4h1a	suppressor of Ty 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-117341716-2	chr2	117341616	117341816	+	834.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_011246, intron 1 of 16)	intron (NM_011246, intron 1 of 16)	1161.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-61802066-4	chr14	61801948	61802148	+	950.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-119675.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	3.58851831555258	1.71441060661503	2.6327864238348	2.997148438172	2.86504634559384	1.43125492623569	2.09362112319966	2.18644063683833	-1.26238221877663	0.155097021390013	0.610280268161914
Merged-chr2-118010588-2	chr2	118010488	118010688	+	618.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_126479, intron 8 of 9)	intron (NR_126479, intron 8 of 9)	100614.0	NR_126479	329496.0	Mm.235844	NR_126479	ENSMUSG00000087203	Gm13986	C230060E24	predicted gene 13986	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-138524104-2	chr3	138524004	138524204	+	586.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur3|SINE|Alu	-2087.0	NM_007917	13684.0	Mm.3941	NM_007917	ENSMUSG00000028156	Eif4e	EG668879|Eif4e-ps|If4e|eIF-4E	eukaryotic translation initiation factor 4E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-65149297-2	chr14	65149197	65149397	+	791.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51191.0	NM_001360385	54616.0	Mm.103748	NM_018788	ENSMUSG00000021978	Extl3	2900009G18Rik|AU040105|Ext1l|mKIAA0519	exostoses (multiple)-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122953555-2	chr8	122953455	122953655	+	558.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 2 of 12)	intron (NM_001081379, intron 2 of 12)	88729.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-70834621-4	chr17	70834511	70834711	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	12166.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-94158151-4	chr2	94158027	94158227	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019657)	promoter-TSS (NM_019657)	-218.0	NM_019657	56348.0	Mm.22505	NM_019657	ENSMUSG00000027195	Hsd17b12	2610510O05Rik|AI172963|KIK-I|Kik1	hydroxysteroid (17-beta) dehydrogenase 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-73595293-4	chr15	73595205	73595405	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357747, intron 2 of 7)	intron (NM_001357747, intron 2 of 7)	1221.0	NM_001168255	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-80433467-2	chr12	80433364	80433564	+	697.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177267, intron 1 of 8)	intron (NM_177267, intron 1 of 8)	3137.0	NM_177267	320808.0	Mm.220310	NM_177267	ENSMUSG00000049106	Dcaf5	9430020B07Rik|AI325023|AI430035|AI848110|AW124614|BCRG2|BCRP2|Wdr22	DDB1 and CUL4 associated factor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-78879470-2	chr18	78879370	78879570	+	660.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_053099, intron 3 of 5)	intron (NM_053099, intron 3 of 5)	229921.0	NM_053099	240427.0	Mm.312871	NM_053099	ENSMUSG00000024548	Setbp1	C130092E12|Seb|mKIAA0437	SET binding protein 1	protein-coding	-0.26806652957139	-0.255343897019066	-0.259524759988354	0.345448296206938	-0.00547765294873709	-0.254399752023014	-0.258603707890396	0.153296612550585	-0.055671359859329	0.981857937941438	1
Merged-chr1-189799714-2	chr1	189799614	189799814	+	737.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008976, intron 3 of 18)	B4|SINE|B4	71446.0	NM_008976	19250.0	Mm.4498	NM_008976	ENSMUSG00000026604	Ptpn14	C130080N23Rik|PTP36	protein tyrosine phosphatase, non-receptor type 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-41021004-4	chr14	41020918	41021118	+	922.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-7185.0	NM_001316737	70564.0	Mm.27227	NM_027464	ENSMUSG00000021792	Fam213a	5730469M10Rik|AU040822|Adrx|Pamm	family with sequence similarity 213, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72348647-4	chr6	72348493	72348693	+	846.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026696, exon 3 of 4)	exon (NM_026696, exon 3 of 4)	1276.0	NM_026696	68364.0	Mm.52711	NM_026696	ENSMUSG00000058706	0610030E20Rik	1500031N04Rik|2810411C16Rik|AI461894	RIKEN cDNA 0610030E20 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-75650681-3	chr2	75650626	75650826	+	733.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-8533.0	NM_146130	229279.0	Mm.316306	NM_053263	ENSMUSG00000059005	Hnrnpa3	2410013L13Rik|2610209F03Rik|2610510D13Rik|Hnrpa3	heterogeneous nuclear ribonucleoprotein A3	protein-coding	0.549765868110757	1.33608456625592	0.224086951739998	0.215262181674411	0.202513502040032	1.3526029224809	0.226581223383785	0.216815249690497	-0.22529574577858	0.907694341786075	0.998431161219273
Merged-chr8-124949551-4	chr8	124949486	124949686	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053207)	promoter-TSS (NM_053207)	-332.0	NM_053207	112405.0	Mm.140619	NM_053207	ENSMUSG00000031987	Egln1	AI503754|C1orf12|HIF-PH2|HPH-2|Hif-p4h-2|ORF13|Phd2|SM-20	egl-9 family hypoxia-inducible factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-44963212-3	chr2	44963100	44963300	+	776.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	59977.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-89595521-4	chr6	89595345	89595545	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167736, intron 1 of 6)	CpG	207.0	NM_025351	66098.0	Mm.20313	NM_025351	ENSMUSG00000030086	Chchd6	0710001P09Rik|1700021B03Rik	coiled-coil-helix-coiled-coil-helix domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-54055359-2	chr11	54055259	54055459	+	552.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_019417, exon 6 of 7)	exon (NM_019417, exon 6 of 7)	13658.0	NM_019417	30794.0	Mm.21830	NM_019417	ENSMUSG00000020388	Pdlim4	Ril	PDZ and LIM domain 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129893560-5	chr2	129893515	129893715	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-92156.0	NR_029452	654409.0	Mm.305555	NR_029452		Stk35os1	4932416H05Rik	serine/threonine kinase 35, opposite strand 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-119001154-4	chr10	119001056	119001256	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49343.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-79646471-4	chr2	79646396	79646596	+	783.525024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080558, intron 8 of 17)	intron (NM_080558, intron 8 of 17)	11071.0	NM_080558	70599.0	Mm.272881	NM_080558	ENSMUSG00000027007	Ssfa2	5730488C15Rik|CS-1|CS1|KRAP|SPAG13|mKIAA1927	sperm specific antigen 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41385172-4	chr19	41385053	41385253	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031376)	promoter-TSS (NM_031376)	-83.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-72943603-2	chr17	72943505	72943705	+	675.5	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	25300.0	NM_029999	77889.0	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-49628003-2	chr4	49627903	49628103	+	816.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(GA)n|Simple_repeat|Simple_repeat	-4057.0	NM_001163263	109331.0	Mm.24765	NM_182999	ENSMUSG00000028309	Rnf20	4833430L21Rik|AW540162|C79397|mKIAA4116	ring finger protein 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-17718684-2	chr19	17718584	17718784	+	775.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163144, intron 3 of 20)	ORR1C2|LTR|ERVL-MaLR	118948.0	NM_001163144	18552.0	Mm.3401	NM_001163144	ENSMUSG00000024713	Pcsk5	PC5|PC6|SPC6|b2b1549Clo|b2b585Clo	proprotein convertase subtilisin/kexin type 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-12245146-4	chr4	12245057	12245257	+	956.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73142.0	NM_026558	68099.0	Mm.25340	NM_026558	ENSMUSG00000028218	Fam92a	6720467C03Rik|Fam92a1	family with sequence similarity 92, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-102399751-4	chr15	102399621	102399821	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6595.0	NM_013672	20683.0	Mm.4618	NM_013672	ENSMUSG00000001280	Sp1	1110003E12Rik|AA450830|AI845540|Sp1-1	trans-acting transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-74397397-2	chr17	74397297	74397497	+	710.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252478, intron 1 of 13)	B4A|SINE|B4	1789.0	NM_144798	210148.0	Mm.243943	NM_144798	ENSMUSG00000024069	Slc30a6	9530029F08Rik|ZnT6	solute carrier family 30 (zinc transporter), member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3938684-4	chr4	3938569	3938769	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019969)	promoter-TSS (NM_019969)	-219.0	NR_104355	66433.0	Mm.27406	NM_181391	ENSMUSG00000042198	Chchd7	1810049H20Rik	coiled-coil-helix-coiled-coil-helix domain containing 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-67039379-2	chr1	67039279	67039479	+	733.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021295)	promoter-TSS (NM_021295)	-507.0	NM_021295	14768.0	Mm.20522	NM_021295	ENSMUSG00000026000	Lancl1	AW124738|Gpr69|Gpr69a|p40	LanC (bacterial lantibiotic synthetase component C)-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-43507969-4	chr1	43507871	43508071	+	993.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010879, intron 1 of 4)	URR1B|DNA|hAT-Charlie	62220.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-12596307-3	chr19	12596205	12596405	+	828.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_015503, exon 1 of 2)	non-coding (NR_015503, exon 1 of 2)	261.0	NR_015503	74333.0	Mm.329744	NR_015503	ENSMUSG00000086213	A330040F15Rik	-	RIKEN cDNA A330040F15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64961155-8	chr5	64961051	64961251	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1055.0	NM_011604	21899.0	Mm.42146	NM_011604	ENSMUSG00000051498	Tlr6	-	toll-like receptor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-121074587-4	chr7	121074479	121074679	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030691)	promoter-TSS (NM_030691)	-49.0	NM_030691	80719.0	Mm.160384	NM_030691	ENSMUSG00000035004	Igsf6	-	immunoglobulin superfamily, member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26547969-3	chr17	26547860	26548060	+	748.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13552.0	NM_026170	67458.0	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129589798-2	chr2	129589698	129589898	+	913.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3041.0	NM_001291020	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	0.249748344168358	0.36625686079916	-0.0445219322530749	-0.0501322448107295	-0.0581448561790189	-0.0357078095136988	-0.0429268993969475	1.08154242241845	1.30403773687323	0.548789693766632	1
Merged-chr18-80470045-4	chr18	80469950	80470150	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026295)	promoter-TSS (NM_026295)	-383.0	NM_026295	67655.0	Mm.312893	NM_026295	ENSMUSG00000033323	Ctdp1	4930563P03Rik|AW553592	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1	protein-coding	6.06066206973228	6.37078112185621	6.5809740740007	5.89035147918533	6.03818496238989	6.64143734580473	6.53390306797491	5.74023915454582	0.0334994105574173	0.895144268637909	0.998431161219273
Merged-chr4-101132852-3	chr4	101132740	101132940	+	772.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183024, intron 6 of 11)	L2c|LINE|L2	63802.0	NM_183024	242570.0	Mm.185636	NM_183024	ENSMUSG00000035275	Raver2	A430091O22Rik	ribonucleoprotein, PTB-binding 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-34512544-2	chr19	34512444	34512644	+	790.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111100, intron 3 of 9)	Lx5b|LINE|L1	14930.0	NM_001111100	16889.0	Mm.157545	NM_021460	ENSMUSG00000024781	Lipa	AA960673|Lal|Lip-1|Lip1	lysosomal acid lipase A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-79812420-4	chr10	79812310	79812510	+	843.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023128, intron 6 of 8)	intron (NM_023128, intron 6 of 8)	-8611.0	NM_030218	78906.0	Mm.33087	NM_030218	ENSMUSG00000035852	Misp	9130017N09Rik	mitotic spindle positioning	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-99268925-4	chr10	99268839	99269039	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5708.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-130062246-2	chr5	130062146	130062346	+	603.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-11080.0	NM_013837	22021.0	Mm.332720	NM_013837	ENSMUSG00000034118	Tpst1	R75054|Tango13a	protein-tyrosine sulfotransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-120851755-4	chr7	120851652	120851852	+	983.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001267711, intron 1 of 17)	intron (NM_001267711, intron 1 of 17)	563.0	NM_001267711	13631.0	Mm.25997	NM_007908	ENSMUSG00000035064	Eef2k	C86191|eEF-2K	eukaryotic elongation factor-2 kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-68908397-2	chr10	68908297	68908497	+	651.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER2B|DNA|TcMar-Tigger	184651.0	NM_177794	327766.0	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116986219-4	chr11	116986122	116986322	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172948, exon 17 of 17)	3' UTR (NM_172948, exon 17 of 17)	67359.0	NM_172948	268510.0	Mm.35141	NM_172948	ENSMUSG00000043857	Mgat5b	C330018B01|GnT-IX|mGnTVB	mannoside acetylglucosaminyltransferase 5, isoenzyme B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-88438164-3	chr9	88438064	88438264	+	678.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359958, intron 1 of 28)	intron (NM_001359958, intron 1 of 28)	787.0	NM_001359958	244962.0	Mm.439873	NM_172926	ENSMUSG00000032422	Snx14	B830022K16|C330035N22Rik|YR-14	sorting nexin 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-73809474-2	chr13	73809374	73809574	+	761.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360694, intron 21 of 24)	intron (NM_001360694, intron 21 of 24)	38157.0	NM_028186	72293.0	Mm.45506	NM_028186	ENSMUSG00000021567	Nkd2	2210403L10Rik|AW212591|mNkd2	naked cuticle 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-90036175-1	chr7	90036075	90036275	+	997.0	f1_balb.idr	intron (NR_110365, intron 1 of 5)	intron (NR_110365, intron 1 of 5)	7016.0	NR_110364	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-35366744-1	chr8	35366644	35366844	+	857.3333130000001	f0_balb.idr	Intergenic	Intergenic	-8997.0	NM_177741	244416.0	Mm.247126	NM_177741	ENSMUSG00000046794	Ppp1r3b	6430576E21|AW821953|GL|PTG	protein phosphatase 1, regulatory (inhibitor) subunit 3B	protein-coding	1.94014345206513	1.24889349914699	2.50752812770239	1.19949683416953	2.40130769167628	2.19919450028453	2.1239802225658	2.05715263136094	0.865801170835243	0.408957584646832	0.892760642634363
Merged-chr14-70765966-3	chr14	70765832	70766032	+	761.977783	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023045, intron 1 of 27)	CpG	696.0	NM_023045	65246.0	Mm.152987	NM_023045	ENSMUSG00000022100	Xpo7	4930506C02Rik|BB164534|Ranbp16|exp7	exportin 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126815464-2	chr8	126815364	126815564	+	998.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33556.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-110659831-1	chr1	110659731	110659931	+	565.0	f1_balb.idr	Intergenic	MMERVK9C_I-int|LTR|ERVK	317762.0	NM_001356415	227485.0	Mm.322070	NM_001081386	ENSMUSG00000047216	Cdh19	-	cadherin 19, type 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-52439500-2	chr8	52439400	52439600	+	733.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	82889.0	NR_151738	330767.0	Mm.246790	NR_151738	ENSMUSG00000110013	1190028D05Rik	-	RIKEN cDNA 1190028D05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-100757678-4	chr15	100757580	100757780	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4067.0	NM_021530	59033.0	Mm.209856	NM_021530	ENSMUSG00000023032	Slc4a8	AW493845|C230026C11|NDCBE|kNBC-3	solute carrier family 4 (anion exchanger), member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126515405-1	chr8	126515305	126515505	+	615.0	f0_balb.idr	Intergenic	Intergenic	-40340.0	NM_001159907	212728.0	Mm.482479	NM_001159907	ENSMUSG00000090290	Tarbp1	Gm17296|Gm179	TAR RNA binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-137858853-7	chr5	137858764	137858964	+	812.7976070000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133209)	promoter-TSS (NM_133209)	-815.0	NM_133209	170741.0	Mm.347593	NM_133209	ENSMUSG00000066684	Pilrb1	FDFACT|Fdact|Pilrb	paired immunoglobin-like type 2 receptor beta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-33996517-3	chr17	33996469	33996669	+	810.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001892, intron 7 of 7)	intron (NM_001001892, intron 7 of 7)	3764.0	NM_001001892	14972.0	Mm.422886	NM_001001892	ENSMUSG00000061232	H2-K1	H-2K|H-2K(d)|H2-K|K-f	histocompatibility 2, K1, K region	protein-coding	0.323720033448151	-0.0420477497724935	0.725832541290972	-0.051781417870347	-0.0577862845869156	-0.0408110940803209	-0.0463270621339875	0.387356395755785	-1.56504148234787	0.491881336492669	1
Merged-chr18-15063574-3	chr18	15063471	15063671	+	961.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001142731)	promoter-TSS (NM_001142731)	11.0	NM_001142731	106931.0	Mm.329299	NM_134112	ENSMUSG00000036225	Kctd1	4933402K10Rik|AI661543|AW553000	potassium channel tetramerisation domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-80886128-4	chr13	80886031	80886231	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_153411)	promoter-TSS (NR_153411)	36.0	NR_153411	105171.0	Mm.423137	NM_001042591	ENSMUSG00000074794	Arrdc3	AI450344|mKIAA1376	arrestin domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126771471-2	chr8	126771371	126771571	+	635.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-77549.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135711067-4	chr5	135710973	135711173	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008898, intron 1 of 15)	intron (NM_008898, intron 1 of 15)	21928.0	NM_008898	18984.0	Mm.3863	NM_008898	ENSMUSG00000005514	Por	4933424M13Rik|CPR|CYPOR|P450R	P450 (cytochrome) oxidoreductase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-76240705-2	chr18	76240610	76240810	+	722.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010754)	promoter-TSS (NM_010754)	-991.0	NM_010754	17126.0	Mm.152699	NM_010754	ENSMUSG00000024563	Smad2	7120426M23Rik|Madh2|Madr2|Smad-2|mMad2	SMAD family member 2	protein-coding	0.390254727844952	0.858626980894934	0.0151444549355011	0.324191914218181	0.155726598892349	0.0223597880803878	0.0164448104607655	0.0113859827951732	-3.20988992438233	0.121928915448512	1
Merged-chr16-91417083-2	chr16	91416983	91417183	+	769.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_008349, intron 4 of 6)	intron (NM_008349, intron 4 of 6)	10848.0	NM_008349	16155.0	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101119573-3	chr15	101119476	101119676	+	825.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_144790, exon 4 of 4)	exon (NM_144790, exon 4 of 4)	3821.0	NM_001355656	208258.0	Mm.152952	NM_144790	ENSMUSG00000047034	Ankrd33	A930021G21Rik|Panky|Panky-a	ankyrin repeat domain 33	protein-coding	0.0287915078831157	0.475828181450542	0.618459373483451	0.40816221397542	0.0295360743798559	0.041823015165363	0.0377779308929132	0.0343617192973197	-3.96629839002587	0.0718081241180164	1
Merged-chr19-10019300-2	chr19	10019175	10019375	+	810.333374	f1_balb.idr|f1_c57bl6.idr	intron (NR_153790, intron 1 of 10)	intron (NR_153790, intron 1 of 10)	1081.0	NM_001347430	74760.0	Mm.281969	NM_144538	ENSMUSG00000024663	Rab3il1	1200014K04Rik|AI115013|C76746|Rab3ail1	RAB3A interacting protein (rabin3)-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-152914635-4	chr2	152914521	152914721	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081044, intron 3 of 11)	intron (NM_001081044, intron 3 of 11)	3269.0	NM_001081044	228785.0	Mm.250604	NM_001081044	ENSMUSG00000027470	Mylk2	9830004H17Rik|BB138278	myosin, light polypeptide kinase 2, skeletal muscle	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-179040478-2	chr2	179040378	179040578	+	660.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-374458.0	NM_026596	68175.0	Mm.158187	NM_026596		4930591A17Rik	-	RIKEN cDNA 4930591A17 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-3322888-1	chr2	3322788	3322988	+	558.0	f0_balb.idr	intron (NM_008708, intron 11 of 13)	intron (NM_008708, intron 11 of 13)	9740.0	NM_001013376	227522.0	Mm.293948	NM_001013376	ENSMUSG00000049950	Rpp38	C330006A15Rik	ribonuclease P/MRP 38 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-57357192-4	chr14	57357086	57357286	+	954.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030004, intron 3 of 7)	intron (NM_030004, intron 3 of 7)	41297.0	NM_030004	68631.0	Mm.25539	NM_030004	ENSMUSG00000021947	Cryl1	1110025H08Rik|A230106J09Rik|C85932|gul3dh	crystallin, lambda 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-77348237-4	chr11	77348126	77348326	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291190)	promoter-TSS (NM_001291190)	-54.0	NM_001291190	237860.0	Mm.440381	NM_177710	ENSMUSG00000037926	Ssh2	SSH-2|SSH-2L|mSSH-2L	slingshot protein phosphatase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133754968-1	chr4	133754868	133755068	+	831.0	f1_c57bl6.idr	Intergenic	Intergenic	-1357.0	NM_001080819	93760.0	Mm.22478	NM_001080819	ENSMUSG00000007880	Arid1a	1110030E03Rik|BAF250a|Osa1|Smarcf1	AT rich interactive domain 1A (SWI-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-24423316-2	chr8	24423216	24423416	+	676.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15630.0	NM_026931	69068.0	Mm.25775	NM_026931	ENSMUSG00000056313	Tcim	1110065B09Rik|1810011O10Rik|AW121743|AW321058	transcriptional and immune response regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-32305893-4	chr12	32305791	32305991	+	957.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB7|LINE|L1	-72898.0	NM_001162903	72123.0	Mm.341352	NM_028111	ENSMUSG00000090946	Ccdc71l	2010109K11Rik|AV375874	coiled-coil domain containing 71 like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5406906-3	chr19	5406809	5407009	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015545)	promoter-TSS (NR_015545)	94.0	NR_027938	74931.0	Mm.388511	NR_015545	ENSMUSG00000086938	4930481A15Rik	-	RIKEN cDNA 4930481A15 gene	ncRNA	-0.854058440729434	0.350130902370778	-0.842969446669302	-0.847090325872083	-0.853011584238196	-0.83302558815076	-0.841801670470746	-0.846366347285773	-3.66898573382433	0.203709016371174	1
Merged-chr6-17596485-2	chr6	17596385	17596585	+	554.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40525.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-130025207-2	chr5	130025107	130025307	+	942.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133768)	promoter-TSS (NM_133768)	-826.0	NM_133768	109900.0	Mm.23869	NM_133768	ENSMUSG00000025533	Asl	2510006M18Rik|ASAL	argininosuccinate lyase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-122019403-4	chr14	122019317	122019517	+	713.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026861, intron 8 of 8)	intron (NM_026861, intron 8 of 8)	-15257.0	NM_001037744	223262.0	Mm.297637	NM_001037744	ENSMUSG00000071229	Timm8a2	-	translocase of inner mitochondrial membrane 8A2	protein-coding	1.96387105159136	1.98469674401975	0.806602149535666	0.790823444296372	1.54629107899327	2.00236282668479	0.811036995958711	0.793610551004769	-0.374594089248009	0.798897042230527	0.998431161219273
Merged-chr13-74260761-4	chr13	74260646	74260846	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001317351, intron 2 of 9)	intron (NM_001317351, intron 2 of 9)	31585.0	NM_009644	11624.0	Mm.290446	NM_009644	ENSMUSG00000021575	Ahrr	mKIAA1234	aryl-hydrocarbon receptor repressor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-8691112-4	chr4	8691026	8691226	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001277149, intron 1 of 37)	CpG	720.0	NM_001277149	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-118129704-4	chr7	118129604	118129804	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019419)	promoter-TSS (NM_019419)	-79.0	NM_019419	54208.0	Mm.29924	NM_019419	ENSMUSG00000030654	Arl6ip1	AIP-6|AL022945|ARMER|AU042858|Aip-1|Arl6ip|C85138|mKIAA0069	ADP-ribosylation factor-like 6 interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-24399663-4	chr7	24399577	24399777	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028047)	promoter-TSS (NM_028047)	49.0	NM_028047	71997.0	Mm.150977	NM_028047	ENSMUSG00000002210	Smg9	1500002O20Rik|AI429693|N28092	smg-9 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	6.90049240056897	6.62832831248132	7.23900023711506	6.6352934549584	6.70927406380275	6.48126502679308	7.15686084227379	6.34072133807389	-0.177653681183448	0.418099658356238	0.898080810038401
Merged-chr18-36708412-4	chr18	36708224	36708424	+	849.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12399.0	NM_172831	240216.0	Mm.252323	NM_172831	ENSMUSG00000044719	E230025N22Rik	EG240216	Riken cDNA E230025N22 gene	protein-coding	0.958458776228291	2.67083421174014	1.78710862855638	1.01584434211368	2.17002958669924	1.09600592581506	3.47975955554448	2.18216247269498	1.40703060491309	0.447894489429136	0.914814758844887
Merged-chr15-85331825-4	chr15	85331730	85331930	+	750.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4551.0	NM_016843	54138.0	Mm.248906	NM_016843	ENSMUSG00000016541	Atxn10	AI325283|C77170|E46|Sca10|TEG-169|Tex169	ataxin 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-89076422-4	chr11	89076318	89076518	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033266, intron 2 of 3)	Lx9|LINE|L1	2577.0	NM_001033266	217071.0	Mm.342127	NM_001033266	ENSMUSG00000072553	Gm525	-	predicted gene 525	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-73612236-4	chr15	73612129	73612329	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033219, intron 1 of 7)	intron (NM_001033219, intron 1 of 7)	5095.0	NM_001357747	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5945188-4	chr19	5945071	5945271	+	860.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164057, intron 13 of 17)	intron (NM_001164057, intron 13 of 17)	19035.0	NM_001164057	18969.0	Mm.209931	NM_008893	ENSMUSG00000024833	Pola2	AI573378	polymerase (DNA directed), alpha 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-45590024-2	chr9	45589886	45590086	+	719.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081270, intron 3 of 32)	intron (NM_001081270, intron 3 of 32)	-158754.0	NR_040732	74602.0	Mm.394117	NR_040732	ENSMUSG00000097074	4833428L15Rik	-	RIKEN cDNA 4833428L15 gene	ncRNA	1.32553014766224	1.40689829589722	1.46057303439885	1.05339534910122	1.42755749189317	0.73500153665883	0.723202304915359	0.713011137149234	-1.60667146934513	0.280610914655446	0.783412873231201
Merged-chr5-96860149-3	chr5	96860050	96860250	+	724.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-61122.0	NR_131152	666266.0	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	1.08927671178044	1.38327423617605	1.18158726089092	1.28973593086303	2.02724133979649	0.811164433424556	0.796732668310259	1.29703949672248	0.463761018149886	0.731283106488737	0.998431161219273
Merged-chr12-38844211-4	chr12	38844094	38844294	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347379, intron 7 of 11)	intron (NM_001347379, intron 7 of 11)	60483.0	NM_001163154	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-42100486-1	chr19	42100386	42100586	+	605.666687	f1_balb.idr	intron (NM_145501, intron 1 of 8)	intron (NM_145501, intron 1 of 8)	10051.0	NM_145501	84095.0	Mm.117037	NM_145501	ENSMUSG00000025178	Pi4k2a	Pi4k2	phosphatidylinositol 4-kinase type 2 alpha	protein-coding	1.50320892601663	1.16428559830666	1.1244964835551	1.09208268604651	2.72508384658691	2.64233197439792	3.22430853363021	2.72494777390588	4.69336402177392	0.000130883627674892	0.00381768662441659
Merged-chr1-190626774-2	chr1	190626674	190626874	+	573.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	223126.0	NR_151624	433390.0	Mm.331295	NR_151624	ENSMUSG00000103644	Gm29678	-	predicted gene, 29678	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-140954369-4	chr7	140954263	140954463	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_030694)	TTS (NM_030694)	1598.0	NM_030694	80876.0	Mm.379266	NM_030694	ENSMUSG00000060591	Ifitm2	DSPA2c|Ifitm3l|fragilis3|mil-3	interferon induced transmembrane protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102420021-2	chr12	102419921	102420121	+	651.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011175, intron 2 of 13)	intron (NM_011175, intron 2 of 13)	19792.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-23492628-2	chr5	23492520	23492720	+	873.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026984, intron 15 of 25)	RSINE1|SINE|B4	58191.0	NM_026984	69188.0	Mm.205190	NM_026984	ENSMUSG00000029004	Kmt2e	1810033J14Rik|9530077A04Rik|D230038D11Rik|Mll5|NKp44L	lysine (K)-specific methyltransferase 2E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-105804075-1	chr9	105803975	105804175	+	605.0	f0_balb.idr	intron (NM_001102607, intron 1 of 36)	ID_B1|SINE|B4	5573.0	NM_172927	245026.0	Mm.482507	NM_172927	ENSMUSG00000043719	Col6a6	E330019B14|E330026B02Rik	collagen, type VI, alpha 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115999267-1	chr11	115999167	115999367	+	589.0	f1_c57bl6.idr	intron (NM_133663, intron 27 of 38)	intron (NM_133663, intron 27 of 38)	-5552.0	NR_152190	100038636.0	Mm.450138	NR_152190		B230344G16Rik	-	RIKEN cDNA B230344G16 gene	ncRNA	-1.84354474832578	-1.81325489144778	-1.53416061964661	-1.82993901100912	-1.8414184563789	-1.81126990231468	-1.82034119297928	-1.82859217979378	-1.52252619601533	0.665276690233728	1
Merged-chr16-20412788-4	chr16	20412683	20412883	+	947.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176839, intron 2 of 6)	intron (NM_176839, intron 2 of 6)	13611.0	NM_013790	27416.0	Mm.20845	NM_013790	ENSMUSG00000022822	Abcc5	2900011L11Rik|AI132311|Abcc5a|Abcc5b|Mrp5	ATP-binding cassette, sub-family C (CFTR/MRP), member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-100113258-2	chr12	100113158	100113358	+	622.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008947, intron 2 of 9)	intron (NM_008947, intron 2 of 9)	927.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-43536741-4	chr17	43536636	43536836	+	863.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001254953, intron 2 of 2)	intron (NM_001254953, intron 2 of 2)	6903.0	NM_001254953	100043332.0	Mm.17626	NM_001254953	ENSMUSG00000096140	Ankrd66	AU041848|D730048J04Rik|Gm4368	ankyrin repeat domain 66	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-98062038-4	chr6	98061931	98062131	+	998.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	70248.0	NM_008601	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-32211584-4	chr9	32211467	32211667	+	951.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195632, intron 10 of 21)	MTC|LTR|ERVL-MaLR	-12682.0	NM_177379	330914.0	Mm.46683	NM_177379	ENSMUSG00000041444	Arhgap32	3426406O18Rik|Gc-gap|Grit|Px-rics|Rics|mKIAA0712|p200Rhogap|p250Gap	Rho GTPase activating protein 32	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-62550202-2	chr8	62550102	62550302	+	582.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-401030.0	NM_001252620	72902.0	Mm.334552	NM_023689	ENSMUSG00000054162	Spock3	2900045C01Rik|AI428471|mKIAA4039	sparc/osteonectin, cwcv and kazal-like domains proteoglycan 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-147747648-1	chr5	147747548	147747748	+	564.0	f1_balb.idr	Intergenic	RSINE1|SINE|B4	-21660.0	NM_010228	14254.0	Mm.389712	NM_010228	ENSMUSG00000029648	Flt1	AI323757|Flt-1|VEGFR-1|VEGFR1|sFlt1	FMS-like tyrosine kinase 1	protein-coding	0.814912047707558	0.85524455442386	0.328965803276765	0.646081094262598	0.314189274669576	0.338593235846228	0.330704087396749	1.17138507093986	-0.338754930775142	0.855913355668433	1
Merged-chr1-43561308-4	chr1	43561211	43561411	+	880.2625119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010879, intron 4 of 4)	intron (NM_010879, intron 4 of 4)	115560.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99044004-1	chr7	99043904	99044104	+	726.0	f1_c57bl6.idr	intron (NM_178635, intron 6 of 14)	L1MC4|LINE|L1	97140.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	1.64344804308389	1.15098223710388	1.101907039794	0.579727377495994	1.11717151140292	0.602005044156269	0.590872508831722	0.772806088953032	-1.79987535634563	0.254650531409892	0.752659815040864
Merged-chr6-137696677-4	chr6	137696575	137696775	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38407.0	NM_011499	20901.0	Mm.22584	NM_011499	ENSMUSG00000030224	Strap	AW557906|C78091|C79202|Unrip	serine/threonine kinase receptor associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-17576059-4	chr10	17575960	17576160	+	911.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-147168.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105613227-2	chr8	105613127	105613327	+	756.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081241, intron 1 of 21)	intron (NM_001081241, intron 1 of 21)	-2239.0	NR_035492	100316712.0		NR_035492	ENSMUSG00000089432	Mir1966	mir-1966|mmu-mir-1966	microRNA 1966	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-145129430-2	chr5	145129330	145129530	+	599.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001033313, exon 6 of 6)	3' UTR (NM_001033313, exon 6 of 6)	10659.0	NM_001033313	231887.0	Mm.188851	NM_001033313	ENSMUSG00000029623	Pdap1	HASPP28|PAP|PAP1	PDGFA associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-16621357-2	chr1	16621261	16621461	+	639.5	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-2023.0	NM_001271017	66799.0	Mm.122430	NM_025773	ENSMUSG00000025939	Ube2w	6130401J04Rik	ubiquitin-conjugating enzyme E2W (putative)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-23661584-1	chr17	23661484	23661684	+	565.0	f1_balb.idr	intron (NM_153784, intron 1 of 9)	intron (NM_153784, intron 1 of 9)	1078.0	NM_153784	212733.0	Mm.59997	NM_153784	ENSMUSG00000043782	Bicdl2	BICDR-2|Ccdc64b	BICD family like cargo adaptor 2	protein-coding	0.592451222114138	0.341876136105473	0.796932924861162	0.329140622087195	0.599446101667527	1.08439045191186	0.674194449020715	0.330112138935093	1.03614233910486	0.556212679681097	1
Merged-chr2-94398795-2	chr2	94398695	94398895	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183106, intron 1 of 24)	intron (NM_183106, intron 1 of 24)	7894.0	NM_183106	74569.0	Mm.248504	NM_183106	ENSMUSG00000027194	Ttc17	9130020K17Rik|D2Bwg1005e	tetratricopeptide repeat domain 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-54491245-2	chr8	54491145	54491345	+	695.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38753.0	NM_029701	76687.0	Mm.86437	NM_029701	ENSMUSG00000054408	Spcs3	1810011E08Rik|SPC22/23	signal peptidase complex subunit 3 homolog (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128033008-2	chr10	128032908	128033108	+	569.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-2338.0	NM_013608	17938.0	Mm.3746	NM_013608	ENSMUSG00000061315	Naca	AL022831|AL024382|Gm1878|mKIAA0363|skNAC	nascent polypeptide-associated complex alpha polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128377923-4	chr2	128377825	128378025	+	935.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028591, intron 1 of 1)	intron (NR_028591, intron 1 of 1)	51426.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-121215110-4	chr4	121215019	121215219	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346660)	promoter-TSS (NM_001346660)	-35.0	NM_001346660	109263.0	Mm.215745	NM_001081013	ENSMUSG00000049878	Rlf	9230110M18Rik|AI195322|MommeD8	rearranged L-myc fusion sequence	protein-coding	3.26214139351126	2.79803868572841	1.74347429498162	2.09229195276445	3.28813819028756	2.92704830434106	2.60815017686296	1.9202902282262	0.303321108293755	0.713663959812111	0.998431161219273
Merged-chr11-117945606-2	chr11	117945506	117945706	+	730.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	23760.0	NM_007707	12702.0	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-57385383-3	chr16	57385310	57385510	+	632.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	32133.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-69215178-2	chr12	69215078	69215278	+	701.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011133, intron 6 of 18)	intron (NM_011133, intron 6 of 18)	13012.0	NM_011133	18974.0	Mm.9199	NM_011133	ENSMUSG00000020974	Pole2	-	polymerase (DNA directed), epsilon 2 (p59 subunit)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-84546174-2	chr12	84546074	84546274	+	784.583313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23654.0	NM_007701	12677.0	Mm.4405	NM_007701	ENSMUSG00000021239	Vsx2	Chx10|Hox-10|Hox10|or	visual system homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118220857-4	chr11	118220759	118220959	+	959.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	-8117.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83602165-4	chr11	83602096	83602296	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_036453, intron 2 of 8)	L2a|LINE|L2	-9109.0	NM_009139	20305.0	Mm.137	NM_009139	ENSMUSG00000018927	Ccl6	MRP-1|Scya6|c10	chemokine (C-C motif) ligand 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-152086811-6	chr4	152086709	152086909	+	972.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_104381)	promoter-TSS (NR_104381)	-54.0	NR_104381	269608.0	Mm.332102	NM_001004156	ENSMUSG00000039713	Plekhg5	BC023181|Syx	pleckstrin homology domain containing, family G (with RhoGef domain) member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-59265398-2	chr4	59265298	59265498	+	935.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_105031, intron 3 of 3)	intron (NR_105031, intron 3 of 3)	5347.0	NR_105031	101055769.0	Mm.421401	NR_105031		Gm12596	-	predicted gene 12596	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-143922591-1	chr1	143922491	143922691	+	549.0	f0_balb.idr	Intergenic	Intergenic	81558.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69657223-2	chr11	69657123	69657323	+	817.2976070000001	f1_balb.idr|f1_c57bl6.idr	TTS (NM_009235)	TTS (NM_009235)	2186.0	NM_009235	20670.0	Mm.347499	NM_009235	ENSMUSG00000041287	Sox15	-	SRY (sex determining region Y)-box 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10020152-1	chr19	10020052	10020252	+	567.0	f0_balb.idr	intron (NR_153790, intron 1 of 10)	ID_B1|SINE|B4	1958.0	NM_001347430	74760.0	Mm.281969	NM_144538	ENSMUSG00000024663	Rab3il1	1200014K04Rik|AI115013|C76746|Rab3ail1	RAB3A interacting protein (rabin3)-like 1	protein-coding	1.5524203758029	0.725254010929647	0.713946833174599	1.04270127732664	1.32560911893699	0.727787249212489	1.46015482382612	1.18273140362062	0.555427495286991	0.711017037252261	0.998431161219273
Merged-chr4-3675726-1	chr4	3675626	3675826	+	540.0	f1_balb.idr	Intergenic	Intergenic	-2395.0	NM_001111096	17096.0	Mm.317331	NM_010747	ENSMUSG00000042228	Lyn	AA407514|Hck-2|p53Lyn|p56Lyn	LYN proto-oncogene, Src family tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-60696342-2	chr13	60696242	60696442	+	776.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_001285917, exon 3 of 27)	exon (NM_001285917, exon 3 of 27)	90022.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-152344729-2	chr2	152344629	152344829	+	689.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175093)	promoter-TSS (NM_175093)	-669.0	NM_175093	228775.0	Mm.276018	NM_144554	ENSMUSG00000032715	Trib3	Ifld2|Nipk|SINK|SKIP3|TRB-3|Trb3	tribbles pseudokinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-47299044-4	chr14	47298938	47299138	+	921.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178684, intron 1 of 3)	intron (NM_178684, intron 1 of 3)	764.0	NM_001360542	218975.0	Mm.212297	NM_178684	ENSMUSG00000021840	Mapk1ip1l	9130202B12|C130032J12Rik	mitogen-activated protein kinase 1 interacting protein 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-31398968-5	chr6	31398952	31399152	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040300)	promoter-TSS (NR_040300)	224.0	NM_013791	27418.0	Mm.238038	NM_013791	ENSMUSG00000025609	Mkln1	A130067F06Rik|AU015903|BB154892	muskelin 1, intracellular mediator containing kelch motifs	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115498995-2	chr5	115498897	115499097	+	848.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F1|SINE|Alu	-7679.0	NM_011223	19303.0	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100548284-4	chr11	100548190	100548390	+	917.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028918, intron 1 of 11)	intron (NM_028918, intron 1 of 11)	2658.0	NM_028918	74407.0	Mm.31590	NM_028918	ENSMUSG00000006784	Ttc25	4933404O19Rik	tetratricopeptide repeat domain 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-84193145-4	chr12	84193055	84193255	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163501, intron 1 of 12)	CpG	860.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96283408-2	chr3	96283308	96283508	+	578.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010186, exon 6 of 6)	3' UTR (NM_010186, exon 6 of 6)	10561.0	NM_010186	14129.0	Mm.150	NM_010186	ENSMUSG00000015947	Fcgr1	AI323638|AV092959|CD64|FcgammaRI|IGGHAFC	Fc receptor, IgG, high affinity I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-84798290-4	chr2	84798205	84798405	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019949)	promoter-TSS (NM_019949)	-523.0	NM_019949	56791.0	Mm.38261	NM_019949	ENSMUSG00000027078	Ube2l6	2810489I21Rik|RIG-B|UBCH8|Ubce8|Ubcm8	ubiquitin-conjugating enzyme E2L 6	protein-coding	0.173818477492311	0.401465123483995	0.361008415554558	0.215215666296899	-0.0729911630000298	-0.0593357014040553	-0.0638034684155069	-0.0675975787275388	-3.7729307968312	0.0749972445254526	1
Merged-chr10-81555421-2	chr10	81555321	81555521	+	602.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4023.0	NR_074087	14797.0	Mm.180013	NM_010347	ENSMUSG00000054452	Aes	AL024115|Esp1|Grg|Grg-5|Grg5|Tle5	amino-terminal enhancer of split	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-5861269-4	chr13	5861196	5861396	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011803)	promoter-TSS (NM_011803)	-193.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-26976094-2	chr2	26975994	26976194	+	558.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001322, intron 3 of 28)	intron (NM_001001322, intron 3 of 28)	2678.0	NM_001290465	279028.0	Mm.330084	NM_001001322	ENSMUSG00000014852	Adamts13	ADAM-TS13|ADAMTS-13|Gm710|vWF-CP	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-26744533-4	chr2	26744449	26744649	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12829.0	NM_001359164	105244099.0		NM_001359164		Gm39773	LCN16	predicted gene, 39773	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-44130627-2	chr17	44130527	44130727	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24818.0	NM_001357996	224794.0	Mm.255971	NM_199016	ENSMUSG00000023961	Enpp4	4933413N07Rik|AA986363|AI195364|E-NPP 4|Gm90	ectonucleotide pyrophosphatase/phosphodiesterase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-53326325-2	chr5	53326225	53326425	+	718.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	59219.0	NM_001145433	66278.0	Mm.27900	NM_001145433	ENSMUSG00000061461	Smim20	1110067B18Rik|1810013D10Rik|N28078	small integral membrane protein 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-164603129-2	chr1	164603029	164603229	+	961.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	99822.0	NR_151593	102635083.0	Mm.98705	NR_151593	ENSMUSG00000097281	Gm26685	-	predicted gene, 26685	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-119773080-2	chr8	119772980	119773180	+	702.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028883, intron 2 of 7)	B1F1|SINE|Alu	5336.0	NM_028883	74347.0	Mm.358759	NM_028883	ENSMUSG00000034105	Tldc1	4632415K11Rik|Kiaa1609	TBC/LysM associated domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114636443-4	chr11	114636344	114636544	+	666.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32099.0	NM_023372	67671.0	Mm.238817	NM_023372	ENSMUSG00000057322	Rpl38	0610025G13Rik|Rbt|Ts|Tss	ribosomal protein L38	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35826888-3	chr17	35826685	35826885	+	626.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_008027, intron 8 of 12)	intron (NM_008027, intron 8 of 12)	3428.0	NM_008027	14251.0	Mm.2931	NM_008027	ENSMUSG00000059714	Flot1	reggie-2	flotillin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-103944473-2	chr2	103944373	103944573	+	679.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-13522.0	NM_001142337	16909.0	Mm.29266	NM_008505	ENSMUSG00000032698	Lmo2	Rbtn-2|Rbtn2|Rhom-2|Ttg2	LIM domain only 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-47919831-1	chr19	47919731	47919931	+	1000.0	f0_balb.idr	promoter-TSS (NM_001001738)	promoter-TSS (NM_001001738)	-532.0	NM_001001738	414801.0	Mm.29457	NM_001001738	ENSMUSG00000044948	Itprip	4833424O12Rik|DANGER	inositol 1,4,5-triphosphate receptor interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-34027331-4	chr15	34027127	34027327	+	875.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	-55492.0	NM_001357926	67154.0	Mm.130883	NM_026002	ENSMUSG00000022255	Mtdh	2610103J23Rik|3D3|3D3/Lyric|AEG-1|AV353288|D8Bwg1112e|Lyric	metadherin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-59291571-2	chr10	59291471	59291671	+	622.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31725.0	NM_001316371	18451.0	Mm.2212	NM_011030	ENSMUSG00000019916	P4ha1	AL022634|P4ha	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-52500571-4	chr1	52500483	52500683	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008667)	promoter-TSS (NM_008667)	-135.0	NM_008667	17936.0	Mm.25903	NM_008667	ENSMUSG00000002881	Nab1	-	Ngfi-A binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-80450686-4	chr17	80450606	80450806	+	856.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009231, intron 5 of 21)	intron (NM_009231, intron 5 of 21)	29747.0	NM_009231	20662.0	Mm.60975	NM_009231	ENSMUSG00000024241	Sos1	4430401P03Rik|9630010N06|AI449023	SOS Ras/Rac guanine nucleotide exchange factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36534815-2	chr18	36534715	36534915	+	659.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271544, intron 14 of 21)	intron (NM_001271544, intron 14 of 21)	6663.0	NM_001271545	240215.0	Mm.135463	NM_172830	ENSMUSG00000024485	Slc4a9	AE4|D630003B07|D630024F24Rik	solute carrier family 4, sodium bicarbonate cotransporter, member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135107997-2	chr5	135107897	135108097	+	692.125	f1_balb.idr|f1_c57bl6.idr	intron (NR_152882, intron 1 of 16)	intron (NR_152882, intron 1 of 16)	1106.0	NR_152882	58805.0	Mm.34213	NM_021455	ENSMUSG00000005373	Mlxipl	ChREBP|Mlx|WS-bHLH|Wbscr14|bHLHd14	MLX interacting protein-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-111778722-4	chr13	111778611	111778811	+	955.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011945, intron 1 of 19)	intron (NM_011945, intron 1 of 19)	30282.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-8837855-4	chr10	8837743	8837943	+	932.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 2 of 19)	intron (NM_175155, intron 2 of 19)	48227.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	1.70855740591928	1.91948710505091	1.36295208408195	1.91942117482593	1.28810259071284	2.28492950662276	1.37150814380763	2.30435715535096	0.469551677784657	0.658448485142353	0.988837901047746
Merged-chr7-25279441-4	chr7	25279353	25279553	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302811, intron 2 of 20)	intron (NM_001302811, intron 2 of 20)	-2726.0	NM_027882	71722.0	Mm.28833	NM_027882	ENSMUSG00000005442	Cic	1200010B10Rik|mKIAA0306	capicua transcriptional repressor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-81372529-2	chr7	81372429	81372629	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357107)	promoter-TSS (NM_001357107)	-54.0	NM_001357107	12877.0	Mm.273122	NM_007755	ENSMUSG00000025586	Cpeb1	AU024112|Cpe-bp1|Cpeb|mCPEB|mCpeb-1	cytoplasmic polyadenylation element binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-116174829-1	chr9	116174729	116174929	+	1000.0	f0_balb.idr	intron (NM_009371, intron 1 of 7)	CpG	534.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-62460543-4	chr2	62460456	62460656	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Plat_L3|LINE|CR1	23097.0	NM_008100	14526.0	Mm.45494	NM_008100	ENSMUSG00000000394	Gcg	GLP-1|Glu|PPG	glucagon	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105703018-2	chr8	105702918	105703118	+	568.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_198299)	TTS (NM_198299)	1371.0	NM_001286345	56513.0	Mm.472753	NM_019695	ENSMUSG00000005699	Pard6a	0710008C04Rik|2610010A15Rik|PAR-6A|PAR6alpha|Par-6|Par6|Par6c|TAX40|Tip-40	par-6 family cell polarity regulator alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-10845913-3	chr8	10845857	10846057	+	904.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36497.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-113978463-4	chr6	113978378	113978578	+	990.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009723, intron 2 of 21)	intron (NM_009723, intron 2 of 21)	-43797.0	NM_001347365	11941.0	Mm.321755	NM_009723	ENSMUSG00000030302	Atp2b2	D6Abb2e|Gena300|PMCA2|Tmy|dfw|jog|wms|wri	ATPase, Ca++ transporting, plasma membrane 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-87531722-4	chr6	87531638	87531838	+	885.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037727, intron 1 of 10)	intron (NM_001037727, intron 1 of 10)	1521.0	NM_001037727	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-105974201-2	chr1	105974076	105974276	+	886.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	16106.0	NR_151625	635504.0	Mm.359717	NR_151625		Gm7160	EG635504	predicted gene 7160	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-82170054-4	chr12	82169912	82170112	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001167983)	promoter-TSS (NM_001167983)	-4.0	NM_001167983	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-70776098-2	chr9	70775998	70776198	+	855.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_007399, intron 14 of 15)	intron (NM_007399, intron 14 of 15)	97116.0	NM_007399	11487.0	Mm.3037	NM_007399	ENSMUSG00000054693	Adam10	1700031C13Rik|MADM|kuz|kuzbanian	a disintegrin and metallopeptidase domain 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-59219881-3	chr6	59219789	59219989	+	808.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11019.0	NM_001081145	68140.0	Mm.25843	NM_001081145	ENSMUSG00000049232	Tigd2	3632410O17Rik	tigger transposable element derived 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-110902446-4	chr8	110902347	110902547	+	998.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172283)	promoter-TSS (NM_172283)	41.0	NM_172283	234730.0	Mm.102591	NM_172283	ENSMUSG00000033703	Fuk	1110046B12Rik|AI303278	fucokinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28360731-2	chr7	28360631	28360831	+	541.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001083912, exon 19 of 19)	exon (NM_001083912, exon 19 of 19)	9191.0	NR_028129	100302567.0		NR_028129		AF357399	MBI-142	snoRNA AF357399	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-55167194-4	chr6	55167047	55167247	+	981.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7843.0	NM_009349	21743.0	Mm.299	NM_009349	ENSMUSG00000003477	Inmt	Temt	indolethylamine N-methyltransferase	protein-coding	0.93925557014689	0.529808726673412	1.28808472029477	0.509668993792437	1.0627159127081	0.532331139192599	1.58505628237842	0.511221926823386	0.6392987599186	0.705815260265249	0.998431161219273
Merged-chr12-110738596-3	chr12	110738511	110738711	+	878.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347428, intron 1 of 2)	CpG	679.0	NM_001347428	69641.0	Mm.475762	NM_027149	ENSMUSG00000037957	Wdr20	2310040A13Rik|AI549910|Wdr20a	WD repeat domain 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-143066688-4	chr5	143066615	143066815	+	829.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359851, intron 12 of 15)	intron (NM_001359851, intron 12 of 15)	46305.0	NM_207110	108086.0	Mm.381440	NM_080561	ENSMUSG00000045078	Rnf216	2810055G22Rik|AI647468|AU019462|C86502|F830018F18Rik|TRIAD3|UIP83|Ubce7ip1	ring finger protein 216	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-123203816-3	chr7	123203710	123203910	+	827.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11056.0	NM_146198	233836.0	Mm.211838	NM_146198	ENSMUSG00000030769	Slc5a11	2010013B02Rik|Kst1|RKST2|SMIT2|Slc5a10	solute carrier family 5 (sodium/glucose cotransporter), member 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-21710546-2	chr13	21710470	21710670	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5573.0	NM_178199	319185.0		NM_178199	ENSMUSG00000094338	Hist1h2bl	H2b-291a	histone cluster 1, H2bl	protein-coding	0.182307792058892	0.206683408271632	0.198774979394123	0.192623117953152	0.982209501103204	1.00477791639547	0.710046782295381	0.193701093513504	4.37615109281026	0.0282671878742505	1
Merged-chr3-36495643-4	chr3	36495552	36495752	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11157.0	NR_040590	329623.0	Mm.490730	NR_040590	ENSMUSG00000085320	Gm11548	E330009D11	predicted gene 11548	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6892778-2	chr19	6892678	6892878	+	911.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16920.0	NM_001166370	67674.0	Mm.318804	NM_026306	ENSMUSG00000038812	Trmt112	0610038D11Rik|Trm112p	tRNA methyltransferase 11-2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165405397-6	chr2	165405295	165405495	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_054055)	TTS (NM_054055)	-5001.0	NM_029021	74614.0	Mm.72179	NM_029021	ENSMUSG00000027670	Ocstamp	4833422F24Rik|OC-STAMP	osteoclast stimulatory transmembrane protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-31087954-5	chr3	31087958	31088158	+	908.400024	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7000.0	NM_001039090	20482.0	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-83899786-4	chr3	83899689	83899889	+	871.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172681, intron 33 of 34)	intron (NM_172681, intron 33 of 34)	-58181.0	NM_011905	24088.0	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91621920-2	chr16	91621820	91622020	+	608.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_010256, exon 21 of 22)	exon (NM_010256, exon 21 of 22)	-2921.0	NM_138664	246738.0	Mm.101927	NM_138664	ENSMUSG00000039763	Dnajc28	BC020175|ORF28	DnaJ heat shock protein family (Hsp40) member C28	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-148086730-2	chr4	148086630	148086830	+	574.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301281, intron 1 of 4)	ID_B1|SINE|B4	1334.0	NM_009642	11610.0	Mm.46247	NM_009642	ENSMUSG00000029007	Agtrap	3300002E14Rik|AT1R|Atrap|D4Wsu124e	angiotensin II, type I receptor-associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-25568299-2	chr9	25568199	25568399	+	549.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 3 of 7)	RMER1A|Other|Other	86702.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-95548870-2	chr9	95548770	95548970	+	665.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-10947.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-18406506-3	chr16	18406416	18406616	+	877.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_007744)	TTS (NM_007744)	6978.0	NM_001111063	12846.0	Mm.100940	NM_007744	ENSMUSG00000000326	Comt	Comt1|D16Wsu103e|D330014B15Rik	catechol-O-methyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-104369781-1	chr8	104369681	104369881	+	546.0	f0_balb.idr	intron (NM_153582, intron 1 of 3)	L1MC4|LINE|L1	26026.0	NM_153582	97487.0	Mm.29658	NM_153582	ENSMUSG00000096188	Cmtm4	Cklfsf4|D19397|Gm9853	CKLF-like MARVEL transmembrane domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-113649600-4	chr6	113649494	113649694	+	968.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 2 of 11)	intron (NM_001113553, intron 2 of 11)	11127.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-64850943-4	chr16	64850850	64851050	+	822.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347245, intron 1 of 8)	intron (NM_001347245, intron 1 of 8)	773.0	NM_001347245	72020.0	Mm.25960	NM_028059	ENSMUSG00000047141	Zfp654	1600021C16Rik|1810008K20Rik|433036|Gm5488|Znf654	zinc finger protein 654	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-31956587-4	chr19	31956494	31956694	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	87833.0	NM_001081074	69865.0	Mm.87538	NM_001081074	ENSMUSG00000052595	A1cf	1810073H04Rik|ACF64|ACF65|ASP|Acf|MCM|MerCreMer|Tg(Myh6-cre/Esr1*)1Jmk|mer	APOBEC1 complementation factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-169873631-3	chr2	169873532	169873732	+	815.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080455, intron 1 of 1)	intron (NM_080455, intron 1 of 1)	89555.0	NR_131974	446211.0	Mm.266854	NR_131974	ENSMUSG00000103935	AY702102	STDP1	cDNA sequence AY702102	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-70522319-4	chr18	70522226	70522426	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289515, intron 6 of 9)	intron (NM_001289515, intron 6 of 9)	5540.0	NR_105775	102466152.0		NR_105775	ENSMUSG00000098721	Mir6357	Gm27333|mmu-mir-6357	microRNA 6357	ncRNA	2.59176076500771	3.41065534845142	1.8115595554405	3.59061124243853	3.44083473082894	3.58535367714939	2.26590493410406	1.99494779667103	-0.0360439554888343	0.963756914362019	0.998431161219273
Merged-chr2-132579028-2	chr2	132578928	132579128	+	571.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291052)	promoter-TSS (NM_001291052)	-780.0	NM_001355652	74182.0	Mm.211211	NM_027096	ENSMUSG00000027346	Gpcpd1	2310004G06Rik|2310032D16Rik|AU015213|Gde5|Prei4|mKIAA1434	glycerophosphocholine phosphodiesterase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-29289903-4	chr5	29289814	29290014	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020295, intron 8 of 16)	intron (NM_020295, intron 8 of 16)	88476.0	NM_020295	56873.0	Mm.41572	NM_020295	ENSMUSG00000010721	Lmbr1	1110048D14Rik|AU017641	limb region 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44322392-3	chr9	44322293	44322493	+	693.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2111.0	NM_027909	71764.0	Mm.491174	NM_027909	ENSMUSG00000032120	C2cd2l	1300006O23Rik|Tmem24	C2 calcium-dependent domain containing 2-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-55754444-3	chr13	55754344	55754544	+	965.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028281, intron 2 of 3)	intron (NM_028281, intron 2 of 3)	27076.0	NM_028281	72562.0	Mm.28145	NM_028281	ENSMUSG00000021496	Pcbd2	2700061N24Rik|Dcoh2|Dcohm	pterin 4 alpha carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 2	protein-coding	2.00982946723326	1.5288952454358	1.19870050034094	1.43376220619493	2.02837349583123	3.21823876713346	2.34502658160599	2.94944876566084	2.71168561760356	0.00529818319941117	0.0697013180115518
Merged-chr2-153214277-2	chr2	153214177	153214377	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11164.0	NM_198617	241732.0	Mm.277243	NM_198617	ENSMUSG00000074671	Tspyl3	AW212607|Gm36	TSPY-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-136428020-2	chr5	136427920	136428120	+	622.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291238, intron 2 of 22)	intron (NM_001291238, intron 2 of 22)	-52217.0	NR_030500	723975.0		NR_030500	ENSMUSG00000106479	Mir721	Mirn721|miRY|mir-721|mmu-mir-721	microRNA 721	ncRNA	-0.0175346509649856	0.341720014440232	0.164342563549307	0.401487788409096	-0.0165767147257156	-0.00101015082677633	-0.00608646318741723	0.60771261155937	-0.352657534787584	0.868988393494118	1
Merged-chr13-23436419-4	chr13	23436346	23436546	+	824.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5429.0	NR_015492	320842.0	Mm.487476	NR_015492	ENSMUSG00000085024	C230035I16Rik	-	RIKEN cDNA C230035I16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-74684162-4	chr7	74684063	74684263	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-129383.0	NM_001038643	108116.0	Mm.425467	NM_023908	ENSMUSG00000025790	Slco3a1	5830414C08Rik|Anr1|MJAM|OATP-D|R75096|Slc21a11	solute carrier organic anion transporter family, member 3a1	protein-coding	7.3041034706867	7.35195938130353	7.21530033464096	6.92719343266898	6.65762639098641	6.43728290854029	7.06780979783053	6.74412751140317	-0.487699999174424	0.00863577291999581	0.097993698134404
Merged-chr15-59772707-2	chr15	59772606	59772806	+	778.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22253.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	-0.802593673557486	-0.793094718163527	-0.341243695287107	-0.798614554876962	-0.802002397560642	-0.791090896558683	-0.332078011335404	-0.79819523297655	0.040958530317021	0.989184000390448	1
Merged-chr12-91711840-4	chr12	91711742	91711942	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 4 of 6)	intron (NM_175367, intron 4 of 6)	74594.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64221200-2	chr5	64221100	64221300	+	932.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019636, intron 2 of 19)	RLTR11B|LTR|ERVK	-9157.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-48225833-4	chr4	48225757	48225957	+	805.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355184, intron 3 of 10)	intron (NM_001355184, intron 3 of 10)	-12642.0	NR_035484	100316708.0		NR_035484	ENSMUSG00000087844	Mir1958	mmu-mir-1958	microRNA 1958	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-102022656-2	chr7	102022426	102022626	+	908.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_029211, intron 8 of 8)	intron (NM_029211, intron 8 of 8)	-4371.0	NM_010531	16068.0	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	0.557532057534538	0.292836018900902	0.284998806590839	0.278913380075555	0.683019840538122	1.17197981522288	0.286732135659654	0.85636520639899	2.88066858505063	0.133815156462147	1
Merged-chr15-103305304-4	chr15	103305204	103305404	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	5134.0	NM_030720	80910.0	Mm.160369	NM_030720	ENSMUSG00000063234	Gpr84	EX33	G protein-coupled receptor 84	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3767078-4	chr4	3766971	3767171	+	862.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 10 of 12)	intron (NM_001111096, intron 10 of 12)	52107.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	-0.362773337486937	-0.130851369684377	-0.351590099342932	0.666934013089567	-0.361728046207169	-0.344990280360608	-0.350398059038946	-0.168369670203367	-2.99151326304975	0.212760684757826	1
Merged-chr1-177623626-4	chr1	177623517	177623717	+	797.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19326.0	NR_037994	75589.0	Mm.86666	NR_037994	ENSMUSG00000101746	2310043L19Rik	-	RIKEN cDNA 2310043L19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-17531016-4	chr16	17530867	17531067	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026909)	promoter-TSS (NM_026909)	85.0	NM_026909	69009.0	Mm.10174	NM_026909	ENSMUSG00000022760	Thap7	1810004B07Rik	THAP domain containing 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44262943-4	chr7	44262852	44263052	+	972.43335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	1474.0	NR_152170	628854.0	Mm.451981	NR_152170		Gm15517	-	predicted gene 15517	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-107584115-6	chr1	107584041	107584241	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5865.0	NM_011459	20725.0	Mm.83909	NM_011459	ENSMUSG00000026315	Serpinb8	CAP-2|CAP2|NK10|Spi8|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-82401748-2	chr8	82401648	82401848	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001254747, intron 1 of 7)	intron (NM_001254747, intron 1 of 7)	838.0	NM_001254747	16168.0	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-121840084-3	chr9	121839991	121840191	+	781.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028384)	promoter-TSS (NM_028384)	-630.0	NM_028384	100502861.0	Mm.335550	NM_028384	ENSMUSG00000079235	Ccdc13	2900041A11Rik|Gm188	coiled-coil domain containing 13	protein-coding	0.891666467855559	1.04886799074139	1.67446304128285	0.458095189143284	0.772718400294742	0.480376430572783	0.68356869537862	0.459622681696571	-2.53464657205759	0.126437399411641	0.55689342891744
Merged-chr18-88952904-4	chr18	88952811	88953011	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19C|LTR|ERVK	-18879.0	NM_175542	246102.0	Mm.772	NM_175542	ENSMUSG00000023066	Rttn	4921538A15Rik|AI666264|C530033I08Rik|D230040K24	rotatin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-86881092-3	chr7	86881001	86881201	+	754.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3C|LINE|L1	-34248.0	NM_001105189	637896.0	Mm.389957	NM_001105189	ENSMUSG00000091962	Vmn2r78	-	vomeronasal 2, receptor 78	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-117438605-2	chr2	117438505	117438705	+	923.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-95728.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-146645696-1	chr3	146645596	146645796	+	601.0	f0_balb.idr	TTS (NM_029144)	TTS (NM_029144)	3764.0	NR_045949	100286843.0	Mm.475299	NR_045949	ENSMUSG00000085810	Gm16325	-	predicted gene 16325	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83059041-2	chr6	83058941	83059141	+	550.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_033606, exon 3 of 12)	exon (NM_033606, exon 3 of 12)	1197.0	NM_033606	93838.0	Mm.140332	NM_033606	ENSMUSG00000009145	Dqx1	2310066E11Rik	DEAQ RNA-dependent ATPase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-105062618-4	chr5	105062517	105062717	+	995.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9056.0	NM_029509	76074.0	Mm.458519	NM_029509	ENSMUSG00000034438	Gbp8	5830443L24Rik|mGBP8	guanylate-binding protein 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115470776-2	chr11	115470676	115470876	+	713.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359606, intron 3 of 3)	B2_Mm1t|SINE|B2	-4891.0	NM_177778	276905.0	Mm.38019	NM_177778	ENSMUSG00000057219	Armc7	A630084C13|BC023126	armadillo repeat containing 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-60713705-2	chr18	60713605	60713805	+	817.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001348146, intron 1 of 6)	intron (NM_001348146, intron 1 of 6)	13861.0	NM_001348103	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-144908877-2	chr7	144908793	144908993	+	657.56665	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	-6207.0	NM_001357868	72284.0	Mm.273049	NM_028184	ENSMUSG00000031072	Oraov1	2210010N10Rik|TAOS1	oral cancer overexpressed 1	protein-coding	0.954749103466627	1.34663456630698	1.38318077882977	0.735168084487828	0.705509624400006	0.573727545667914	0.563749906806359	0.892785854228096	-2.42921524634306	0.12090186419849	0.545687322573484
Merged-chr4-145216140-2	chr4	145216040	145216240	+	863.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011610, intron 9 of 9)	intron (NM_011610, intron 9 of 9)	-21135.0	NM_001276465	230895.0	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90584786-2	chr2	90584686	90584886	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4139.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65552446-4	chr9	65552379	65552579	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_153119)	TTS (NM_153119)	27608.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-107763841-4	chr5	107763738	107763938	+	939.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007964, intron 17 of 17)	intron (NM_007964, intron 17 of 17)	-38033.0	NM_001267621	14581.0	Mm.2078	NM_010278	ENSMUSG00000029275	Gfi1	AW495828|Gfi-1|Pal-1|Pal1	growth factor independent 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167382532-3	chr2	167382407	167382607	+	645.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-33329.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-122289223-2	chr3	122289123	122289323	+	630.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	4480.0	NR_030439	791077.0		NR_030439	ENSMUSG00000076456	Mir760	Mirn760|mir-760|mmu-mir-760	microRNA 760	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-12130313-4	chr18	12130225	12130425	+	559.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024182, intron 1 of 12)	intron (NM_024182, intron 1 of 12)	1475.0	NM_024182	66878.0	Mm.28551	NM_024182	ENSMUSG00000024404	Riok3	1200013N13Rik|D18Ertd331e|E130306C24Rik|Sudd	RIO kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71396702-4	chr8	71396598	71396798	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181418)	promoter-TSS (NM_181418)	-157.0	NM_026636	68251.0	Mm.21749	NM_026636	ENSMUSG00000031820	Babam1	5430437P03Rik|Merit40	BRISC and BRCA1 A complex member 1	protein-coding	5.7797035940422	6.34978018842528	6.16456081524421	5.72240222007044	5.98901287675431	6.06061629553852	6.06791428126596	5.95758809309994	-0.00223487871246102	0.992445149450185	0.998431161219273
Merged-chr7-28051395-2	chr7	28051295	28051495	+	628.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1303.0	NM_011874	23996.0	Mm.29582	NM_011874	ENSMUSG00000030603	Psmc4	CIP21|MIP224	proteasome (prosome, macropain) 26S subunit, ATPase, 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-74679207-3	chr7	74679110	74679310	+	749.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-124430.0	NM_001038643	108116.0	Mm.425467	NM_023908	ENSMUSG00000025790	Slco3a1	5830414C08Rik|Anr1|MJAM|OATP-D|R75096|Slc21a11	solute carrier organic anion transporter family, member 3a1	protein-coding	1.61896732594953	1.73583264819686	1.27408376438738	0.873640822447818	1.18906429350905	0.904671738075316	1.88464398012199	1.38930600523308	-0.0738576123908941	0.954677017353869	0.998431161219273
Merged-chr18-35745435-4	chr18	35745352	35745552	+	751.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR11D|LTR|ERVK	-4898.0	NM_001289592	72512.0	Mm.45995	NM_028261	ENSMUSG00000024349	Tmem173	2610307O08Rik|ERIS|MPYS|Mita|STING	transmembrane protein 173	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-21141437-4	chr5	21141347	21141547	+	967.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34832.0	NR_153366	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-55479693-2	chr12	55479593	55479793	+	640.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	12954.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-73985118-1	chr16	73985018	73985218	+	567.0	f0_balb.idr	intron (NM_001358493, intron 8 of 28)	intron (NM_001358493, intron 8 of 28)	356949.0	NR_030464	751561.0		NR_030464	ENSMUSG00000104758	Mir691	Mirn691|mir-691|mmu-mir-691	microRNA 691	ncRNA	-0.472933505498876	-0.532839142939334	-0.723863690288022	-0.726211646280671	-0.729517512965269	-0.232956395954	-0.723191190129745	-0.725801972149514	0.358402546274857	0.897332917262846	1
Merged-chr12-72417517-1	chr12	72417417	72417617	+	551.0	f1_c57bl6.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-8463.0	NM_153457	104001.0	Mm.221275	NM_153457	ENSMUSG00000021087	Rtn1	Nsp	reticulon 1	protein-coding	-0.548148127287174	-0.534994719662482	0.263484604031121	-0.542612953676498	-0.547323257953237	-0.150462351890654	-0.53834130381974	-0.542031808161518	-1.50711037112802	0.587523960093481	1
Merged-chr17-47511955-2	chr17	47511855	47512055	+	878.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081635, intron 1 of 6)	B1_Mur1|SINE|Alu	6904.0	NM_001081635	12445.0	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-90504902-4	chr5	90504800	90505000	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007423, intron 10 of 14)	intron (NM_007423, intron 10 of 14)	-14049.0	NM_145146	280662.0	Mm.348786	NM_145146	ENSMUSG00000029369	Afm	Alf|alpha-Alb	afamin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-40202407-3	chr4	40202305	40202505	+	930.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	37420.0	NM_172689	230073.0	Mm.86382	NM_172689	ENSMUSG00000040296	Ddx58	6430573D20Rik|C330021E21|RIG-I|RLR-1	DEAD (Asp-Glu-Ala-Asp) box polypeptide 58	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-85821931-2	chr11	85821831	85822031	+	973.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_077059, intron 1 of 4)	intron (NR_077059, intron 1 of 4)	10457.0	NR_077059	69909.0	Mm.440214	NR_077059	ENSMUSG00000087013	2610027K06Rik	-	RIKEN cDNA 2610027K06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-30425891-2	chr15	30425791	30425991	+	567.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355502, intron 2 of 21)	intron (NM_001355502, intron 2 of 21)	253298.0	NM_008729	18163.0	Mm.321648	NM_008729	ENSMUSG00000022240	Ctnnd2	Catnd2|Nprap|neurojugin	catenin (cadherin associated protein), delta 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71404351-2	chr8	71404272	71404472	+	796.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_026636, exon 9 of 9)	exon (NM_026636, exon 9 of 9)	-1640.0	NM_001310502	234396.0	Mm.216549	NM_172756	ENSMUSG00000046295	Ankle1	8430438L13Rik|Ankrd41|C430003I23|Lem3	ankyrin repeat and LEM domain containing 1	protein-coding	2.30871772709355	1.00587412285104	1.57995654445833	0.967369565055911	1.31796559904932	2.15892730696364	1.86340756235801	1.38318155008754	0.329920894012964	0.787436119857007	0.998431161219273
Merged-chr3-37038031-6	chr3	37037955	37038155	+	888.658325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172679, intron 74 of 85)	intron (NM_172679, intron 74 of 85)	-25601.0	NM_009350	21744.0	Mm.8122	NM_009350	ENSMUSG00000027719	Adad1	Tenr	adenosine deaminase domain containing 1 (testis specific)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36254829-2	chr1	36254729	36254929	+	635.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10527.0	NM_198899	320011.0	Mm.261022	NM_198899	ENSMUSG00000037470	Uggt1	0910001L17Rik|A930007H10Rik|AA589501|AI414429|AI448372|C820010P03Rik|GT|UGT1|Ugcgl1	UDP-glucose glycoprotein glucosyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-103359293-4	chr11	103359210	103359410	+	928.81665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_183288)	TTS (NM_183288)	4382.0	NM_183288	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153779649-2	chr2	153779549	153779749	+	880.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1230.0	NR_036629	100504221.0	Mm.246778	NM_177849	ENSMUSG00000044083	Efcab8	A630008I04|EG329541	EF-hand calcium binding domain 8	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-63052208-2	chr11	63052108	63052308	+	768.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9451.0	NM_027660	71062.0	Mm.23534	NM_027660	ENSMUSG00000042189	Tekt3	4933407G07Rik	tektin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-75822643-3	chr13	75822549	75822749	+	774.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17236.0	NM_001360151	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	1.58083327857651	1.35502138331527	0.878193661641548	0.862768678445682	1.5958842494189	2.044197264598	2.14240666953273	0.86549107445909	1.78562507622217	0.179320702933934	0.650521001955655
Merged-chr19-8784388-2	chr19	8784288	8784488	+	934.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146092, intron 2 of 11)	intron (NM_146092, intron 2 of 11)	1928.0	NM_146092	225895.0	Mm.220886	NM_146092	ENSMUSG00000003680	Taf6l	2810417N14Rik|BB223262|C530024J06Rik|Paf65a	TATA-box binding protein associated factor 6 like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-156911191-2	chr1	156911089	156911289	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357391, intron 1 of 19)	intron (NM_001357391, intron 1 of 19)	28198.0	NM_001159966	78255.0	Mm.28376	NM_023884	ENSMUSG00000026594	Ralgps2	1810020P17Rik|2210408F11Rik|4921528G01Rik|9130014M22Rik|AU043409|AW046161	Ral GEF with PH domain and SH3 binding motif 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-136217960-2	chr2	136217860	136218060	+	740.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360384, intron 2 of 10)	intron (NM_001360384, intron 2 of 10)	160212.0	NM_029530	76161.0	Mm.41638	NM_029530	ENSMUSG00000027270	Lamp5	3110035N03Rik|6330527O06Rik|BAD-LAMP|LAMP-5	lysosomal-associated membrane protein family, member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105966101-4	chr8	105966003	105966203	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253804)	promoter-TSS (NM_001253804)	12.0	NM_001253804	20498.0	Mm.292447	NM_009195	ENSMUSG00000017765	Slc12a4	AW546649|KCC1|RBCKCC1	solute carrier family 12, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-172461187-2	chr2	172461087	172461287	+	665.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025542, intron 5 of 8)	MTD|LTR|ERVL-MaLR	-2591.0	NM_001039560	654821.0	Mm.389337	NM_001039560	ENSMUSG00000074569	Gcnt7	A330041C17Rik|gnt	glucosaminyl (N-acetyl) transferase family member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3910779-2	chr12	3910679	3910879	+	939.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001271753, exon 23 of 23)	3' UTR (NM_001271753, exon 23 of 23)	19035.0	NM_153743	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-16868902-3	chr12	16868816	16869016	+	739.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26062.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	2.37664289303284	2.15522439816927	1.06870289236371	1.04082307792082	2.3986991606745	3.15123502631597	1.0764506777574	1.71978465287639	1.12640801872613	0.336270522673151	0.836606195473009
Merged-chr6-134558923-4	chr6	134558788	134558988	+	864.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008514, intron 1 of 22)	intron (NM_008514, intron 1 of 22)	8025.0	NM_008514	16974.0	Mm.321990	NM_008514	ENSMUSG00000030201	Lrp6	C030016K15Rik|Cd|Gw|ska26|ska<m26Jus>|skax26	low density lipoprotein receptor-related protein 6	protein-coding	4.36646362117739	4.469575556279	4.77169146048583	4.26703319184116	3.543608421276	3.7152665027015	4.55742091304251	3.15174970938687	-0.849714166313056	0.0663608718174159	0.386381980203298
Merged-chr17-70996176-3	chr17	70996067	70996267	+	818.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001357820, exon 3 of 4)	exon (NM_001357820, exon 3 of 4)	1845.0	NM_001357820	67268.0	Mm.489605	NM_026064	ENSMUSG00000024048	Myl12a	2900073G15Rik|AI838292|C80200	myosin, light chain 12A, regulatory, non-sarcomeric	protein-coding	1.29504111542634	0.985021781528762	0.962354434727911	1.17574826603638	1.90281041395046	1.64839532851937	2.08461063960551	2.47153536572324	3.41591033497679	0.00703649282204079	0.0853340709691833
Merged-chr11-107319248-2	chr11	107319148	107319348	+	891.599976	f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 4 of 9)	intron (NR_153311, intron 4 of 9)	-129867.0	NM_001161329	68979.0	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-54641647-5	chr14	54641561	54641761	+	993.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199470)	promoter-TSS (NM_199470)	-297.0	NM_199470	239096.0	Mm.386871	NM_199470	ENSMUSG00000059674	Cdh24	1700040A22Rik	cadherin-like 24	protein-coding	2.5654589104111	4.62037550280959	4.7786222521479	2.57468560082983	3.07069277355673	3.6735953034393	4.33101802571779	3.43341353144434	-0.438526387428367	0.501650283255583	0.938443375140454
Merged-chr13-102144013-4	chr13	102143920	102144120	+	925.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-375803.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-8314468-2	chr12	8314368	8314568	+	777.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021429, intron 1 of 6)	intron (NM_021429, intron 1 of 6)	1035.0	NM_021429	58240.0	Mm.309954	NM_021429	ENSMUSG00000020605	Hs1bp3	-	HCLS1 binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-19194356-2	chr19	19194256	19194456	+	754.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-83160.0	NM_001043354	225998.0	Mm.234641	NM_146095	ENSMUSG00000036192	Rorb	Nr1f2|RZR-beta|RZRB|Rorbeta|hstp	RAR-related orphan receptor beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-59569766-4	chr4	59569671	59569871	+	936.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4|LINE|L1	-11792.0	NM_001301367	72479.0	Mm.272905	NM_024255	ENSMUSG00000028383	Hsdl2	2610207I16Rik	hydroxysteroid dehydrogenase like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-102248311-2	chr7	102248211	102248411	+	651.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019566, intron 1 of 1)	intron (NM_019566, intron 1 of 1)	1807.0	NM_019566	56212.0	Mm.259795	NM_019566	ENSMUSG00000073982	Rhog	2810426G09Rik|Arhg|Sid10750	ras homolog family member G	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-29624005-3	chr6	29623900	29624100	+	905.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14151.0	NM_001347079	320938.0	Mm.276381	NM_177296	ENSMUSG00000012535	Tnpo3	5730544L10Rik|C430013M08Rik|C81142|D6Ertd313e|Trn-SR|mKIAA4133	transportin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-63335220-2	chr10	63335120	63335320	+	678.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159589, intron 2 of 7)	B3|SINE|B2	3815.0	NM_019812	93759.0	Mm.351459	NM_019812	ENSMUSG00000020063	Sirt1	AA673258|SIR2L1|Sir2|Sir2a|Sir2alpha	sirtuin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-35492242-2	chr2	35492142	35492342	+	609.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30793.0	NM_001145821	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47871119-2	chr17	47871019	47871219	+	696.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028767, intron 14 of 16)	intron (NM_028767, intron 14 of 16)	-36428.0	NM_001109973	17240.0	Mm.329100	NM_010783	ENSMUSG00000032717	Mdfi	I-mf|I-mfa	MyoD family inhibitor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-31834332-2	chr9	31834232	31834432	+	799.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	78953.0	NM_013800	12023.0	Mm.261044	NM_013800	ENSMUSG00000032033	Barx2	2310006E12Rik|Barx2b	BarH-like homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-24617043-4	chr4	24616947	24617147	+	872.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001033531, exon 10 of 10)	3' UTR (NM_001033531, exon 10 of 10)	120596.0	NM_199467	212377.0	Mm.120919	NM_199467	ENSMUSG00000045751	Mms22l	F730047E07Rik|Gm134	MMS22-like, DNA repair protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166175268-2	chr2	166175168	166175368	+	586.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19585.0	NM_028072	72043.0	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-44529534-4	chr10	44529431	44529631	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-70783.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90573586-3	chr2	90573475	90573675	+	779.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	7072.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-108354704-2	chr14	108354604	108354804	+	617.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	559535.0	NM_199065	76965.0	Mm.257268	NM_199065	ENSMUSG00000075478	Slitrk1	3200001I04Rik	SLIT and NTRK-like family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-7680227-6	chr10	7680081	7680281	+	766.069458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033219, exon 1 of 1)	non-coding (NR_033219, exon 1 of 1)	954.0	NM_001358649	18537.0	Mm.258431	NM_008786	ENSMUSG00000019795	Pcmt1	C79501|PIMT	protein-L-isoaspartate (D-aspartate) O-methyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-59162023-2	chr11	59161943	59162143	+	635.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001270791, intron 1 of 1)	intron (NM_001270791, intron 1 of 1)	1702.0	NM_001270791	216792.0	Mm.266175	NM_173785	ENSMUSG00000049287	Iba57	4930543L23Rik|A230051G13Rik|C1orf69	IBA57 homolog, iron-sulfur cluster assembly	protein-coding	1.0014620030939	1.9716987905464	0.645599433931907	1.50874201001911	0.606396024700805	2.16735389464978	0.650051979464018	0.632527594198383	-0.398840435686634	0.795209719236708	0.998431161219273
Merged-chr7-142385483-1	chr7	142385383	142385583	+	561.0	f0_balb.idr	exon (NM_009983, exon 2 of 9)	exon (NM_009983, exon 2 of 9)	2387.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	1.53787276618234	0.875195930535265	1.35590090512809	1.31728339149656	1.55189018245783	0.877932788929774	1.36679301468329	1.32409065911861	0.038113338115303	0.976974150347893	0.998431161219273
Merged-chr13-60680595-2	chr13	60680495	60680695	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	78384.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167641589-4	chr2	167641494	167641694	+	725.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9589.0	NM_023230	66589.0	Mm.278783	NM_023230	ENSMUSG00000078923	Ube2v1	0610011J09Rik|AI256840|CROC-1|CROC1|D7Bwg1382e|UEV-1	ubiquitin-conjugating enzyme E2 variant 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-90114708-4	chr9	90114617	90114817	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001357780, exon 1 of 13)	5' UTR (NM_001357780, exon 1 of 13)	103.0	NM_001039147	21761.0	Mm.426209	NM_024431	ENSMUSG00000062270	Morf4l1	MORFRG15|MRG15|TEG-189|Tex189|mKIAA4002	mortality factor 4 like 1	protein-coding	4.47259750831358	5.61597681728902	5.03468091128876	5.38166715324708	5.04348378763297	5.10404043462807	5.96004537333049	4.81027787711771	0.140114357289534	0.69751391668077	0.998087997318924
Merged-chr11-116811410-2	chr11	116811291	116811491	+	796.25	f0_balb.idr|f0_c57.idr	intron (NM_001347633, intron 3 of 4)	(CAGAG)n|Simple_repeat|Simple_repeat	16655.0	NM_026280	67622.0	Mm.64962	NM_026280	ENSMUSG00000020814	Mxra7	1810057P16Rik|E130302J09Rik	matrix-remodelling associated 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71250162-5	chr17	71250045	71250245	+	979.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001164885)	TTS (NM_001164885)	45491.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	0.752654161266085	0.613570672994663	0.994273066774586	1.83248408805741	1.35969559185367	0.616456996811813	1.15689877563554	0.592227717294982	-0.694945611455079	0.653908300358809	0.987059758436968
Merged-chr3-8981859-4	chr3	8981766	8981966	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	-17720.0	NM_001025261	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	4.24664955479617	3.70765606485411	3.89110780848366	4.28081880914572	4.0179200692442	4.30201268256413	2.77802622020385	3.40833692909251	-0.432236304273295	0.399714725448779	0.885176145862419
Merged-chr5-111035653-4	chr5	111035564	111035764	+	911.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001267622, intron 2 of 22)	intron (NM_001267622, intron 2 of 22)	31520.0	NR_030482	735278.0		NR_030482	ENSMUSG00000076163	Mir701	Mirn701|mir-701|mmu-mir-701	microRNA 701	ncRNA	2.56813143150906	1.99275076649172	1.68429359814232	1.63292231294776	3.30105160389441	3.5069283622883	3.45475159352047	2.23052885063404	2.28202311203212	0.00466910784170329	0.0635627336060016
Merged-chr19-45944521-3	chr19	45944407	45944607	+	876.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198296, intron 15 of 25)	Lx8|LINE|L1	-53630.0	NR_152221	100174921.0	Mm.487206	NR_152221		4930505N22Rik	-	RIKEN cDNA 4930505N22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-113133558-1	chr11	113133458	113133658	+	567.0	f0_c57.idr	intron (NR_015556, intron 1 of 2)	intron (NR_015556, intron 1 of 2)	68280.0	NR_015556	72386.0	Mm.266961	NR_015556	ENSMUSG00000087259	2610035D17Rik	-	RIKEN cDNA 2610035D17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67061724-2	chr10	67061624	67061824	+	919.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178606, intron 2 of 7)	L1MB5|LINE|L1	35264.0	NM_001204915	28193.0	Mm.41272	NM_178606	ENSMUSG00000019873	Reep3	D10Ucla1	receptor accessory protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45716999-2	chr7	45716899	45717099	+	995.75	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_203280, exon 2 of 7)	5' UTR (NM_203280, exon 2 of 7)	1003.0	NM_203280	56632.0	Mm.24222	NM_020011	ENSMUSG00000057342	Sphk2	C76851	sphingosine kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-75829144-4	chr2	75829043	75829243	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3034.0	NM_172666	228061.0	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-190797221-2	chr1	190797121	190797321	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178775, intron 12 of 14)	intron (NM_178775, intron 12 of 14)	114549.0	NM_178775	320119.0	Mm.220912	NM_178775	ENSMUSG00000089872	Rps6kc1	AA682037|B130003F20Rik|C80612|Rpk118	ribosomal protein S6 kinase polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-58965274-4	chr11	58965216	58965416	+	927.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_031172, exon 2 of 7)	exon (NM_031172, exon 2 of 7)	1535.0	NM_031172	56631.0	Mm.179733	NM_031172	ENSMUSG00000036964	Trim17	Rnf16|terf	tripartite motif-containing 17	protein-coding	0.350118563314907	0.783970059090496	0.391087245083449	0.705759903033917	0.566393986319864	0.241955682872974	0.23719955669742	0.233181443915865	-1.97478304128855	0.300678824535539	1
Merged-chr6-124279610-3	chr6	124279503	124279703	+	970.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25048.0	NM_001170395	93671.0	Mm.37426	NM_053094	ENSMUSG00000008845	Cd163	CD163v2|CD163v3	CD163 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33408540-3	chr16	33408439	33408639	+	856.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358569, intron 1 of 8)	MTD|LTR|ERVL-MaLR	8094.0	NM_001358569	22661.0	Mm.392667	NM_011749	ENSMUSG00000022811	Zfp148	2210405J08Rik|AI480666|AW045217|BERF-1|BFCOL1|ZBP-89|Znf148	zinc finger protein 148	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-6238482-2	chr2	6238382	6238582	+	672.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_040333, intron 1 of 6)	intron (NR_040333, intron 1 of 6)	-25488.0	NM_024208	67856.0	Mm.38342	NM_024208	ENSMUSG00000039063	Echdc3	2310005D12Rik|AI662097	enoyl Coenzyme A hydratase domain containing 3	protein-coding	0.965682246778648	0.461252725659058	1.29510501542438	0.443668056134809	0.43264572602296	0.463463390914239	1.30997754511812	0.793399777306312	-0.180313391717649	0.918513155626253	1
Merged-chr4-59455192-4	chr4	59455096	59455296	+	930.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1L|LTR|ERVL-MaLR	-16563.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-66953447-4	chr10	66953342	66953542	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M5|LINE|L1	-33058.0	NR_138561	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-157458634-4	chr2	157458538	157458738	+	894.962524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025395, intron 5 of 13)	intron (NM_001025395, intron 5 of 13)	34345.0	NM_001025395	20779.0	Mm.22845	NM_009271	ENSMUSG00000027646	Src	AW259666|pp60c-src	Rous sarcoma oncogene	protein-coding	2.46069360335063	3.0591716645224	3.94177995051397	4.02777820630073	2.17560445428241	3.30387491690826	2.55909978769094	3.63052245501739	-0.762282729532078	0.268911052615702	0.77235751897938
Merged-chr17-63499902-5	chr17	63499705	63499905	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_015794, exon 1 of 9)	exon (NM_015794, exon 1 of 9)	775.0	NM_015794	50758.0	Mm.136366	NM_015794	ENSMUSG00000023965	Fbxl17	6330576B01Rik|AI452053|BB073797|C130023C01Rik|Fbx13|Fbxo13	F-box and leucine-rich repeat protein 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-58576700-4	chr3	58576694	58576894	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001040396, exon 1 of 6)	exon (NM_001040396, exon 1 of 6)	158.0	NM_001040396	69227.0	Mm.270950	NM_001040396	ENSMUSG00000075700	Selenot	2810407C02Rik|5730408P04Rik|Selt	selenoprotein T	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105609444-2	chr8	105609344	105609544	+	595.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081241, intron 1 of 21)	L2|LINE|L2	4215.0	NM_001081241	75687.0	Mm.41261	NM_001081241	ENSMUSG00000038604	Ripor1	2310066E14Rik|AI837433|Fam65a	RHO family interacting cell polarization regulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-174084942-3	chr1	174084839	174085039	+	823.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4099.0	NM_146722	258717.0	Mm.377652	NM_146722	ENSMUSG00000049528	Olfr429	MOR105-1	olfactory receptor 429	protein-coding	1.46459045334357	1.26468597518342	0.857292897657694	1.73394262543503	1.00054095873195	1.42766953489301	1.50384970178537	1.0378387475466	-0.448285226056014	0.727681441469054	0.998431161219273
Merged-chr19-46004097-2	chr19	46003997	46004197	+	620.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_176785, exon 1 of 1)	exon (NM_176785, exon 1 of 1)	619.0	NM_176785	20170.0	Mm.101110	NM_176785	ENSMUSG00000074811	Hps6	5330434M19Rik|BLOC2|ru	HPS6, biogenesis of lysosomal organelles complex 2 subunit 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35419147-2	chr17	35419047	35419247	+	818.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17A|LTR|ERVK	-5700.0	NM_023124	15019.0	Mm.486287	NM_023124		H2-Q8	H-2Q8|MMS10-T|Ms10t|Qa-2|Qa-8|Qa8	histocompatibility 2, Q region locus 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-3708248-1	chr7	3708148	3708348	+	1000.0	f1_balb.idr	Intergenic	Intergenic	4207.0	NM_029767	76846.0	Mm.13944	NM_029767	ENSMUSG00000006333	Rps9	3010033P07Rik|AL022771|AL022885	ribosomal protein S9	protein-coding	1.33878771150537	1.29159864259521	1.36326241626342	0.753944626516084	1.35135001070093	0.775470639083268	1.116990804459	1.08356983911765	-0.486928849877892	0.727320022118075	0.998431161219273
Merged-chr4-6352002-2	chr4	6351887	6352087	+	681.5	f0_balb.idr|f1_c57bl6.idr	Intergenic	FordPrefect|DNA|hAT-Tip100	-13693.0	NM_016807	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	0.33968195769258	0.360084566893014	0.800472543132661	0.967217178893193	0.815129113089608	0.361591753576938	0.681264832948693	0.512647831609395	-0.284194485767166	0.8729073938788	1
Merged-chr5-67404546-4	chr5	67404466	67404666	+	836.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164806, intron 3 of 4)	GA-rich|Low_complexity|Low_complexity	23233.0	NM_001164806	666938.0	Mm.101339	NM_001164806	ENSMUSG00000092060	Bend4	D330027G24Rik|EG666938	BEN domain containing 4	protein-coding	2.00661674994522	2.13174553709844	1.94618692738329	1.62827824566665	2.25819559602267	1.88299086607694	1.6751773277594	1.77705929968665	-0.0384908936795832	0.967970921964	0.998431161219273
Merged-chr16-36657850-3	chr16	36657768	36657968	+	920.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019388, intron 1 of 7)	intron (NM_019388, intron 1 of 7)	8209.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-100380810-2	chr6	100380710	100380910	+	660.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-93452.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80557534-2	chr10	80557391	80557591	+	893.0499880000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_025852, intron 1 of 14)	intron (NM_025852, intron 1 of 14)	4069.0	NM_025852	66932.0	Mm.1116	NM_025852	ENSMUSG00000047417	Rexo1	1700021P10Rik|2610511M11Rik|AW050347|EloA-BP1|Rex1|Tceb3bp1	REX1, RNA exonuclease 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140395666-2	chr5	140395566	140395766	+	575.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-6358.0	NM_172277	231834.0	Mm.27098	NM_172277	ENSMUSG00000029560	Snx8	B130023O14Rik	sorting nexin 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-74505924-4	chr1	74505823	74506023	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310662)	promoter-TSS (NM_001310662)	-102.0	NM_001310662	319651.0	Mm.66568	NM_176972	ENSMUSG00000033364	Usp37	4932415L06Rik|C330008N13Rik	ubiquitin specific peptidase 37	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-62225230-4	chr18	62225133	62225333	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45133.0	NM_001013754	225609.0	Mm.296917	NM_001013754	ENSMUSG00000054589	Gm9949	EG225609	predicted gene 9949	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-62821011-4	chr5	62820907	62821107	+	885.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170705, intron 2 of 8)	intron (NM_001170705, intron 2 of 8)	7184.0	NM_001170705	100322896.0	Mm.479821	NM_001170705	ENSMUSG00000090326	Dthd1	Gm17384	death domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-134185491-2	chr5	134185391	134185591	+	739.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359852, intron 1 of 14)	intron (NM_001359852, intron 1 of 14)	1453.0	NM_053266	114674.0	Mm.218744	NM_053266	ENSMUSG00000015942	Gtf2ird2	1700012P16Rik	GTF2I repeat domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-27940308-2	chr15	27940208	27940408	+	591.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081302, intron 1 of 56)	intron (NM_001081302, intron 1 of 56)	85540.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-140714012-4	chr4	140713902	140714102	+	881.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173867, intron 7 of 12)	intron (NM_173867, intron 7 of 12)	12529.0	NM_173867	108911.0	Mm.253	NM_173867	ENSMUSG00000040945	Rcc2	2610510H01Rik|2610529N02Rik|AA536646|AA675016|Td60|mKIAA1470	regulator of chromosome condensation 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-11669240-2	chr18	11669140	11669340	+	913.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081223, intron 2 of 18)	intron (NM_001081223, intron 2 of 18)	11891.0	NM_001081223	225182.0	Mm.154275	NM_175458	ENSMUSG00000041238	Rbbp8	9930104E21Rik|CtIP|RBBP-8|RIM|SAE2	retinoblastoma binding protein 8, endonuclease	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-24865013-3	chr4	24864913	24865113	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-13889.0	NM_001033531	212390.0	Mm.409581	NM_001033531	ENSMUSG00000040387	Klhl32	6430524H05Rik|D4Ertd389e|Gm1356|mKIAA1900	kelch-like 32	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-45037067-3	chr19	45036973	45037173	+	836.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001195265, exon 7 of 16)	exon (NM_001195265, exon 7 of 16)	8699.0	NM_001195265	100503041.0	Mm.329877	NM_177605	ENSMUSG00000074818	Pdzd7	9130207N01|EG435601|Pdzk7	PDZ domain containing 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27418693-4	chr2	27418587	27418787	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009500, intron 1 of 27)	intron (NM_009500, intron 1 of 27)	8921.0	NR_133905	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-52510386-3	chr15	52510268	52510468	+	666.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-202077.0	NM_027212	69790.0	Mm.195562	NM_027212	ENSMUSG00000038622	Med30	1810038N03Rik|2510044J04Rik|TRAP25|Thrap6	mediator complex subunit 30	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-35177488-4	chr6	35177404	35177604	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027513)	promoter-TSS (NM_027513)	-112.0	NM_027513	70699.0	Mm.261208	NM_027513	ENSMUSG00000038759	Nup205	3830404O05Rik|AV248391|mKIAA0225	nucleoporin 205	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-102656731-4	chr4	102656623	102656823	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	66880.0	NM_001177981	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-41571556-2	chr4	41571393	41571593	+	791.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175138, intron 1 of 19)	intron (NM_175138, intron 1 of 19)	1699.0	NM_175138	68922.0	Mm.79127	NM_175138	ENSMUSG00000061322	Dnaic1	1110066F04Rik|BB124644|Dnai1|b2b1526Clo	dynein, axonemal, intermediate chain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21431199-3	chr9	21431102	21431302	+	901.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357721, intron 1 of 19)	(TC)n|Simple_repeat|Simple_repeat	6294.0	NM_001357719	13430.0	Mm.433257	NM_007871	ENSMUSG00000033335	Dnm2	Dyn2|Udnm|b2b2159Clo	dynamin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-24407704-2	chr9	24407604	24407804	+	671.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR18D_MM|LTR|ERVK	95436.0	NM_001359948	244745.0	Mm.38526	NM_172920	ENSMUSG00000043067	Dpy19l1	1100001I19Rik|6030402K12|AI225861|AW558481	dpy-19-like 1 (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-99158316-4	chr9	99158212	99158412	+	905.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18101.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-25142870-2	chr12	25142775	25142975	+	773.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13701.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	0.291492353829366	-0.0203877270341095	0.466346077318844	-0.0269851273652526	-0.0309778822975547	-0.0195385349707718	0.475641445688744	-0.0264879457282892	-0.622763358622576	0.787729698963527	1
Merged-chr15-80798026-4	chr15	80797923	80798123	+	784.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177124)	promoter-TSS (NM_177124)	-587.0	NM_177124	213988.0	Mm.131328	NM_144812	ENSMUSG00000047888	Tnrc6b	2700090M07Rik|A730065C02Rik|AI848765|D230019K20Rik	trinucleotide repeat containing 6b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-110431676-3	chr11	110431576	110431776	+	926.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356352, intron 1 of 11)	MIRb|SINE|MIR	32574.0	NM_001356353	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-107478143-4	chr8	107478030	107478230	+	990.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025830, intron 4 of 23)	intron (NM_025830, intron 4 of 23)	41732.0	NM_025830	66894.0	Mm.390058	NM_025830	ENSMUSG00000031930	Wwp2	1300010O06Rik|AA690238|AIP2|AW554328	WW domain containing E3 ubiquitin protein ligase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95294541-2	chr3	95294441	95294641	+	650.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133858, intron 7 of 9)	intron (NM_133858, intron 7 of 9)	11606.0	NM_199475	75007.0	Mm.279287	NM_133858	ENSMUSG00000038712	Mindy1	1810005H09Rik|4930504E06Rik|AA562754|AA960384|AW561904|Fam63a|cI-40|mKIAA1390|ni	MINDY lysine 48 deubiquitinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-19986219-4	chr14	19986124	19986324	+	893.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8975.0	NM_001285909	14702.0	Mm.41737	NM_010315	ENSMUSG00000043004	Gng2	-	guanine nucleotide binding protein (G protein), gamma 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-49407894-2	chr7	49407794	49407994	+	811.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175272, intron 4 of 37)	intron (NM_175272, intron 4 of 37)	161705.0	NM_175272	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-54527740-2	chr14	54527640	54527840	+	737.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10270.0	NM_001313907	27374.0	Mm.196585	NM_013768	ENSMUSG00000023110	Prmt5	Jbp1|Skb1	protein arginine N-methyltransferase 5	protein-coding	0.315499252756392	-0.0751748878078657	0.404551058278358	0.281912305483244	-0.0851243256572535	-0.0743763756567123	-0.0779193235271227	-0.0809080023907408	-3.78555586820389	0.0983931361150814	1
Merged-chr9-5306733-2	chr9	5306633	5306833	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_009807, exon 9 of 10)	exon (NM_009807, exon 9 of 10)	-2116.0	NM_007609	12363.0	Mm.1569	NM_007609	ENSMUSG00000033538	Casp4	CASP-11|CASP-4|Casp11|Caspl|ich-3	caspase 4, apoptosis-related cysteine peptidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-123917323-4	chr4	123917180	123917380	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017475)	promoter-TSS (NM_017475)	-153.0	NM_017475	54170.0	Mm.220922	NM_017475	ENSMUSG00000028646	Rragc	AU041672|Gtr2|RAGC|TIB929|YGR163W	Ras-related GTP binding C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-98881708-4	chr10	98881618	98881818	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB3|LINE|L1	-32924.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-69275495-3	chr10	69275387	69275587	+	788.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252638, intron 8 of 11)	intron (NM_001252638, intron 8 of 11)	62293.0	NM_001252638	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-31874643-1	chr17	31874543	31874743	+	621.0	f1_c57bl6.idr	Intergenic	Intergenic	-18839.0	NM_010831	17691.0	Mm.290941	NM_010831	ENSMUSG00000024042	Sik1	Hrt-20|Msk|Sik|Sik-1|Snf1lk	salt inducible kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-37337508-4	chr10	37337413	37337613	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-198587.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-19019776-5	chr11	19019726	19019926	+	903.5599980000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001193271)	promoter-TSS (NM_001193271)	-857.0	NM_010789	17268.0	Mm.356578	NM_010789	ENSMUSG00000020160	Meis1	C530044H18Rik|Evi8	Meis homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-86018769-3	chr13	86018661	86018861	+	756.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28034.0	NM_007749	12867.0	Mm.378898	NM_007749	ENSMUSG00000017778	Cox7c	COXVIIc|Cox7c1	cytochrome c oxidase subunit VIIc	protein-coding	1.1287412197593	0.988423888196067	0.96191866489607	2.06080269045486	2.21141340353648	2.59621786647783	0.96786410394913	2.07301382228948	1.90395663432876	0.128187593398314	0.560221495480683
Merged-chr6-148283577-1	chr6	148283477	148283677	+	612.0	f0_balb.idr	intron (NM_001347518, intron 10 of 18)	intron (NM_001347518, intron 10 of 18)	-71079.0	NR_003634	66184.0	Mm.391542	NM_025405	ENSMUSG00000063171	Rps4l	1110033J19Rik|AA407494|Rps4y2	ribosomal protein S4-like	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-9908295-2	chr13	9908195	9908395	+	572.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_033269, intron 4 of 4)	intron (NM_033269, intron 4 of 4)	-142974.0	NM_144516	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-31011607-2	chr17	31011472	31011672	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_177465)	TTS (NM_177465)	-46122.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	0.791026209225634	1.34781995041296	0.483017795828059	1.65819383756674	0.459644995215829	0.497923154167728	1.04476525550391	0.475127595723905	-2.42385356775606	0.15682928152142	0.613360045340919
Merged-chr8-115379415-2	chr8	115379315	115379515	+	622.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	327479.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-121629480-4	chr3	121629374	121629574	+	853.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14011.0	NR_036456	100503044.0	Mm.65320	NM_176992	ENSMUSG00000044522	A730020M07Rik	-	RIKEN cDNA A730020M07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-83443183-2	chr9	83443083	83443283	+	862.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_102437, intron 1 of 2)	intron (NR_102437, intron 1 of 2)	-2056.0	NM_029434	75782.0	Mm.199698	NM_027448	ENSMUSG00000032258	Lca5	4930431B11Rik|5730406O13Rik|AV274874|ORF64	Leber congenital amaurosis 5 (human)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-22084545-2	chr9	22084445	22084645	+	791.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253897, intron 1 of 8)	(T)n|Simple_repeat|Simple_repeat	882.0	NM_001253898	26940.0	Mm.425568	NM_012029	ENSMUSG00000066839	Ecsit	Sitpec	ECSIT signalling integrator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46396837-4	chr19	46396736	46396936	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015752)	promoter-TSS (NM_015752)	-60.0	NM_001025391	24069.0	Mm.41210	NM_015752	ENSMUSG00000025231	Sufu	Su(fu)	SUFU negative regulator of hedgehog signaling	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-28366043-2	chr19	28365943	28366143	+	594.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175459, intron 4 of 10)	intron (NM_175459, intron 4 of 10)	-312181.0	NR_045330	320176.0	Mm.406716	NR_045330	ENSMUSG00000097735	D930032P07Rik	-	RIKEN cDNA D930032P07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-78649114-3	chr8	78649048	78649248	+	715.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001009981, intron 5 of 10)	intron (NM_001009981, intron 5 of 10)	139820.0	NM_001282108	76775.0	Mm.334631	NM_029736	ENSMUSG00000031684	Slc10a7	2410193C02Rik|P7	solute carrier family 10 (sodium/bile acid cotransporter family), member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-94704547-2	chr8	94704447	94704647	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-8305.0	NM_026385	67801.0	Mm.279977	NM_026385	ENSMUSG00000031775	Pllp	0610010I06Rik|AV001002|Plapi|Tm4sf11	plasma membrane proteolipid	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95519094-4	chr3	95518982	95519182	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB4|LINE|L1	-7704.0	NM_021281	13040.0	Mm.3619	NM_021281	ENSMUSG00000038642	Ctss	Cats	cathepsin S	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-131078006-1	chr2	131077906	131078106	+	737.0	f1_c57bl6.idr	exon (NM_011426, exon 10 of 21)	exon (NM_011426, exon 10 of 21)	8759.0	NM_011426	20612.0	Mm.1374	NM_011426	ENSMUSG00000027322	Siglec1	Cd169|Siglec-1|Sn	sialic acid binding Ig-like lectin 1, sialoadhesin	protein-coding	0.704056833401693	0.358753086367041	0.352241139480801	0.865998799726767	0.809108665859608	0.84692921727885	0.35367683332696	0.509657095913171	0.327172063254224	0.853584142401281	1
Merged-chr6-124907965-4	chr6	124907863	124908063	+	950.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008479, intron 5 of 7)	intron (NM_008479, intron 5 of 7)	3742.0	NM_008479	16768.0	Mm.4528	NM_008479	ENSMUSG00000030124	Lag3	CD223|LAG-3|Ly66	lymphocyte-activation gene 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-128734384-3	chr4	128734289	128734489	+	878.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195083, intron 1 of 6)	intron (NM_001195083, intron 1 of 6)	6818.0	NM_001195083	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	1.21816906492802	1.08990475569616	1.06813639573458	2.06329611716893	1.87601335496512	2.00397221202573	2.04458242557844	2.07471886819515	1.67593281659484	0.147314087476181	0.597466522728415
Merged-chr9-77919336-3	chr9	77919235	77919435	+	950.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134255, intron 1 of 7)	(TG)n|Simple_repeat|Simple_repeat	1970.0	NM_134255	68801.0	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10266641-4	chr19	10266528	10266728	+	961.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198114, intron 5 of 19)	intron (NM_198114, intron 5 of 19)	-25880.0	NM_001033481	225908.0	Mm.329716	NM_001033481	ENSMUSG00000036098	Myrf	6030439E18|Gm1804|Gm98|Mrf	myelin regulatory factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-9093753-2	chr5	9093653	9093853	+	775.875	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6984.0	NM_001081029	652925.0	Mm.439954	NM_001081029	ENSMUSG00000079659	Tmem243	4930420K17Rik|E030031F02Rik	transmembrane protein 243, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-4028048-4	chr15	4027919	4028119	+	909.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028266)	promoter-TSS (NR_028266)	-613.0	NR_028266	414066.0	Mm.394461	NR_028266		BC037032	-	cDNA Sequence BC037032	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32647464-3	chr2	32647371	32647571	+	955.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146348, intron 1 of 14)	intron (NM_001146348, intron 1 of 14)	876.0	NM_001146348	13805.0	Mm.225297	NM_007932	ENSMUSG00000026814	Eng	AI528660|AI662476|CD105|Endo|S-endoglin	endoglin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133494622-4	chr4	133494528	133494728	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081156, intron 1 of 1)	intron (NM_001081156, intron 1 of 1)	3922.0	NM_001081156	69539.0	Mm.151594	NM_001081156	ENSMUSG00000056596	Trnp1	2300002D11Rik|Trnp	TMF1-regulated nuclear protein 1	protein-coding	2.68966348171705	3.11382180406829	2.33243649619892	1.44428088583964	2.79648153667031	3.22160342299425	3.19287819921825	2.11703311419529	0.696736441791415	0.39528686396845	0.882909751294042
Merged-chr6-120150715-4	chr6	120150618	120150818	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016718, intron 1 of 3)	intron (NM_016718, intron 1 of 3)	-43105.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-125727957-2	chr8	125727857	125728057	+	717.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-6246.0	NM_025636	66566.0	Mm.25296	NM_025636	ENSMUSG00000031851	Ntpcr	2310079N02Rik|AI449709	nucleoside-triphosphatase, cancer-related	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-25764948-3	chr15	25764879	25765079	+	888.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001353142, intron 1 of 20)	intron (NM_001353142, intron 1 of 20)	-9034.0	NM_001353141	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-49068101-2	chr8	49068001	49068201	+	560.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	(GGGAGA)n|Simple_repeat|Simple_repeat	-393411.0	NM_011857	23965.0	Mm.42191	NM_011857	ENSMUSG00000031561	Tenm3	2610100B16Rik|Odz1|Odz3|Ten-m3|mKIAA1455	teneurin transmembrane protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-155959489-4	chr4	155959411	155959611	+	861.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001039157)	TTS (NM_001039157)	-2801.0	NM_026125	67389.0	Mm.29140	NM_026125	ENSMUSG00000023571	C1qtnf12	1110035L05Rik|C1qdc2|CTRP12|Fam132a|alipolin	C1q and tumor necrosis factor related 12	protein-coding	2.80733904390191	4.53551533028041	4.61785282045696	3.67973490150592	4.01141803386643	4.23115347565048	4.27323048672201	3.69893524319519	-0.0194917540789542	0.969917515064481	0.998431161219273
Merged-chr11-79224682-4	chr11	79224588	79224788	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18336.0	NM_001042565	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-173737871-4	chr1	173737756	173737956	+	999.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001204910, intron 1 of 7)	intron (NM_001204910, intron 1 of 7)	3953.0	NM_001204910	226691.0	Mm.440876	NM_001204910	ENSMUSG00000073490	Ifi207	AI607873|Pyhin-A|pyhinA	interferon activated gene 207	protein-coding	-2.18292257394068	-2.15545247547656	-2.03304972317742	-2.17058342868585	-2.18099422382073	-2.1536522739386	-2.16187909550322	-2.16936197735154	-0.683654500252594	0.846597994014493	1
Merged-chr6-4979042-2	chr6	4978942	4979142	+	592.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_181595, intron 2 of 15)	intron (NM_181595, intron 2 of 15)	75722.0	NM_181595	243725.0	Mm.332901	NM_181595	ENSMUSG00000032827	Ppp1r9a	2810430P21Rik|4930518N04Rik|5330407E15|A230094E16Rik|BB181831|NRB|mKIAA1222|neurabin-I	protein phosphatase 1, regulatory (inhibitor) subunit 9A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-108607757-2	chr2	108607657	108607857	+	570.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	670533.0	NM_029790	76894.0	Mm.330451	NM_029790	ENSMUSG00000057234	Mettl15	0610027B03Rik|AI303697|AW049952|Mett5d1	methyltransferase like 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-54913055-2	chr1	54912955	54913155	+	963.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081433, intron 1 of 27)	intron (NM_001081433, intron 1 of 27)	13332.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-93835343-3	chr16	93835244	93835444	+	870.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045529, intron 1 of 16)	intron (NM_001045529, intron 1 of 16)	3223.0	NM_001045529	338467.0	Mm.287329	NM_001045529	ENSMUSG00000039456	Morc3	1110051N18Rik|AI452146|BF318192|D16Jhu32e|NXP2|Zcwcc3	microrchidia 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-46817917-4	chr11	46817817	46818017	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178759, intron 3 of 8)	intron (NM_178759, intron 3 of 8)	7118.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	5.49596323633121	5.85095380890765	5.83260894593144	5.94951627205397	6.04880181399626	5.98686507909314	6.18082709874679	6.48305589629546	0.44329894266869	0.0618063301511511	0.369298978662107
Merged-chr4-102625154-4	chr4	102625034	102625234	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35291.0	NM_001177981	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	3.1536022370654	2.84841789834289	2.61046263031496	2.01721096828527	4.04332578747755	2.72999693878656	3.87794878763863	2.2252238954024	1.18650892120504	0.104043707499865	0.502812729289763
Merged-chr10-80039828-4	chr10	80039719	80039919	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025554)	promoter-TSS (NM_025554)	-160.0	NM_025554	66420.0	Mm.18579	NM_025554	ENSMUSG00000004667	Polr2e	2410021N14Rik|25kDa|AW208866|RPB5|XAP4	polymerase (RNA) II (DNA directed) polypeptide E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-60106171-11	chr11	60106066	60106266	+	948.7727050000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009021, intron 1 of 5)	CpG	1153.0	NM_009021	19377.0	Mm.296366	NM_009021	ENSMUSG00000062115	Rai1	Gt1	retinoic acid induced 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150349864-4	chr4	150349713	150349913	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 1 of 22)	(TCC)n|Simple_repeat|Simple_repeat	67897.0	NM_001085492	68703.0	Mm.291274	NM_001085492	ENSMUSG00000039852	Rere	1110033A15Rik|AI414665|ARG|ARP|ATN1L|AW742570|Atr2|DNB1|eye<m03Jus>|eyes3|mKIAA0458	arginine glutamic acid dipeptide (RE) repeats	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-69141062-4	chr14	69140958	69141158	+	984.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30744.0	NM_010920	18092.0	Mm.390691	NM_010920	ENSMUSG00000044186	Nkx2-6	AV044928|Nkx-2.6|Nkx2.6|Tix|tinman	NK2 homeobox 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115716405-2	chr11	115716305	115716505	+	769.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7808.0	NM_008163	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-155224366-4	chr1	155224271	155224471	+	940.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	65668.0	NM_021433	58244.0	Mm.66264	NM_021433	ENSMUSG00000026470	Stx6	2310039E05Rik|2410005I16Rik|AA437559|AI415714|AI845861	syntaxin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-49318059-2	chr13	49317959	49318159	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8851.0	NM_015759	30938.0	Mm.291089	NM_015759	ENSMUSG00000037946	Fgd3	5830461L01Rik|ZFYVE5	FYVE, RhoGEF and PH domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67285400-4	chr10	67285283	67285483	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001036293)	promoter-TSS (NM_001036293)	-102.0	NM_001036293	641340.0	Mm.136223	NM_001036293	ENSMUSG00000075000	Nrbf2	NRBF-2	nuclear receptor binding factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28973228-2	chr7	28973128	28973328	+	696.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028659, intron 6 of 7)	B2_Mm2|SINE|B2	8660.0	NM_001285943	73830.0	Mm.29714	NM_028659	ENSMUSG00000053565	Eif3k	1200009C21Rik|Eif3s12	eukaryotic translation initiation factor 3, subunit K	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-151190272-4	chr5	151190190	151190390	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163493)	promoter-TSS (NM_001163493)	-97.0	NR_153382	243362.0	Mm.209272	NM_146258	ENSMUSG00000016128	Stard13	DLC2|GT650	StAR-related lipid transfer (START) domain containing 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-86504307-4	chr1	86504163	86504363	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-22294.0	NR_153834	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-112724224-4	chr12	112724113	112724313	+	997.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024602, intron 1 of 18)	MER45A|DNA|hAT-Tip100	2039.0	NM_001024602	217882.0	Mm.23689	NM_001024602	ENSMUSG00000072825	Cep170b	AI466840|AW555464|Kiaa0284|mKIAA0284	centrosomal protein 170B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-4922797-4	chr7	4922681	4922881	+	937.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358882)	promoter-TSS (NM_001358882)	-99.0	NM_001358882	269854.0	Mm.42652	NM_201355	ENSMUSG00000035285	Nat14	BC047219	N-acetyltransferase 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24936555-2	chr17	24936455	24936655	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001163447, exon 1 of 32)	exon (NM_001163447, exon 1 of 32)	422.0	NM_001163448	30957.0	Mm.43081	NM_013931	ENSMUSG00000024163	Mapk8ip3	BB120594|D17Wsu15e|JIP-3|JSAP1|JSAP1a|JSAP1b|JSAP1c|JSAP1d|Jip3|Syd2|mKIAA1066	mitogen-activated protein kinase 8 interacting protein 3	protein-coding	-0.90856715107536	-0.125828373998887	-0.901397477057805	-0.904086526466182	-0.747864373710333	-0.890012471362281	-0.900630138308409	-0.903616214400303	-2.26152155324398	0.447902055616201	1
Merged-chr14-50930109-1	chr14	50930009	50930209	+	1000.0	f1_balb.idr	intron (NM_001033271, intron 2 of 6)	intron (NM_001033271, intron 2 of 6)	740.0	NM_001310506	219024.0	Mm.239117	NM_001033271	ENSMUSG00000035953	Tmem55b	BC039161|Pip4p1	transmembrane protein 55b	protein-coding	1.8881293803291	1.83857557247583	1.1101135123835	2.00061007661027	2.75934645911487	1.43183702614742	1.11706359083859	2.84789815885717	1.23635788360076	0.266255956583128	0.769151254995423
Merged-chr13-43770308-2	chr13	43770208	43770408	+	867.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-14804.0	NM_009856	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124448032-2	chr5	124447932	124448132	+	777.299988	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310725, intron 2 of 6)	intron (NM_001310725, intron 2 of 6)	1328.0	NM_001310727	67956.0	Mm.137966	NM_030241	ENSMUSG00000049327	Kmt5a	2410195B05Rik|AA617402|AW536475|PR-SET7|PR/SET07|Setd8	lysine methyltransferase 5A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-5942681-5	chr2	5942550	5942750	+	748.93335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081131, exon 1 of 17)	exon (NM_001081131, exon 1 of 17)	142.0	NM_001081131	209692.0	Mm.222517	NM_001081131	ENSMUSG00000025815	Dhtkd1	C330018I04Rik	dehydrogenase E1 and transketolase domain containing 1	protein-coding	1.94629663984591	0.895665093976344	1.97952849889709	1.2452478356602	1.65149604656563	0.899380169723527	1.10689010038176	1.25157808881299	-1.16783343675232	0.369236834462606	0.863136285888838
Merged-chr11-3160571-3	chr11	3160465	3160665	+	1000.0	f0_balb.idr|f1_balb.idr	intron (NM_030207, intron 9 of 32)	MTD|LTR|ERVL-MaLR	32898.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-4806872-2	chr7	4806772	4806972	+	782.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5468.0	NM_133777	77891.0	Mm.389787	NM_133777	ENSMUSG00000060860	Ube2s	0910001J09Rik|6720465F12Rik|AA409170|E2-EPF	ubiquitin-conjugating enzyme E2S	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-69189779-2	chr3	69189679	69189879	+	643.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-32640.0	NM_027843	71619.0	Mm.98122	NM_027843	ENSMUSG00000098207	Arl14	9130014L17Rik|Arf7	ADP-ribosylation factor-like 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67051053-1	chr10	67050953	67051153	+	706.5	f0_balb.idr	intron (NM_178606, intron 2 of 7)	intron (NM_178606, intron 2 of 7)	45935.0	NM_001204915	28193.0	Mm.41272	NM_178606	ENSMUSG00000019873	Reep3	D10Ucla1	receptor accessory protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-8416238-2	chr6	8416138	8416338	+	556.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001302353, intron 4 of 4)	intron (NM_001302353, intron 4 of 4)	92923.0	NR_040452	320312.0	Mm.374890	NR_040452	ENSMUSG00000087305	A430035B10Rik	2810488G03Rik	RIKEN cDNA A430035B10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-56962604-4	chr9	56962483	56962683	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178374, intron 2 of 8)	intron (NM_178374, intron 2 of 8)	11659.0	NM_178374	66069.0	Mm.220984	NM_178374	ENSMUSG00000055334	Snupn	0610031A09Rik|Rnut1|Snupn1	snurportin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-49771249-3	chr2	49771182	49771382	+	917.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008449, exon 26 of 26)	3' UTR (NM_008449, exon 26 of 26)	-16404.0	NM_027990	71897.0	Mm.41381	NM_027990	ENSMUSG00000026765	Lypd6b	2310010M24Rik|AW049525	LY6/PLAUR domain containing 6B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-40665182-1	chr19	40665082	40665282	+	794.0	f1_c57bl6.idr	intron (NM_009848, intron 1 of 9)	B1_Mus2|SINE|Alu	5412.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-14216784-3	chr10	14216649	14216849	+	850.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	250370.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	1.21504953384859	0.723190937956397	1.54253047741306	1.17421098551973	1.11816362168696	0.72572497773536	0.714384443384528	1.49912580196433	-0.558076221195313	0.708606243090168	0.998431161219273
Merged-chr10-81544576-2	chr10	81544476	81544676	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010301, intron 1 of 6)	CpG	470.0	NM_010301	14672.0	Mm.260925	NM_010301	ENSMUSG00000034781	Gna11	Dsk7|E430025L19	guanine nucleotide binding protein, alpha 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-121642678-4	chr9	121642575	121642775	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011703)	promoter-TSS (NM_011703)	-41.0	NM_011703	22354.0	Mm.282007	NM_011703	ENSMUSG00000032528	Vipr1	AV071699|VIP-R1|VPAC1	vasoactive intestinal peptide receptor 1	protein-coding	4.21798729525363	3.6059449173534	4.7893379929263	4.06614152744153	4.29415006754015	3.63365352995802	4.78399146090349	4.0252101896063	0.0172739427533301	0.970085333291595	0.998431161219273
Merged-chr14-118922914-3	chr14	118922849	118923049	+	789.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360413)	promoter-TSS (NM_001360413)	-158.0	NM_001360413	66573.0	Mm.87456	NM_025943	ENSMUSG00000042156	Dzip1	2510025K24Rik|2810422M04Rik	DAZ interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26090456-4	chr17	26090322	26090522	+	963.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011933)	promoter-TSS (NM_011933)	-258.0	NM_011933	26378.0	Mm.292869	NM_011933	ENSMUSG00000036775	Decr2	-	2-4-dienoyl-Coenzyme A reductase 2, peroxisomal	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-35870513-3	chr15	35870413	35870613	+	836.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177151, intron 44 of 61)	intron (NM_177151, intron 44 of 61)	67733.0	NM_053071	12864.0	Mm.548	NM_053071	ENSMUSG00000014313	Cox6c	-	cytochrome c oxidase subunit VIc	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-91216635-4	chr1	91216531	91216731	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016894, intron 2 of 2)	intron (NM_016894, intron 2 of 2)	-33673.0	NM_001355763	67921.0	Mm.337238	NM_026454	ENSMUSG00000034343	Ube2f	2510010F15Rik|AI851109	ubiquitin-conjugating enzyme E2F (putative)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-89810890-2	chr1	89810790	89810990	+	918.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037136, intron 12 of 16)	intron (NM_001037136, intron 12 of 16)	120286.0	NM_010262	14472.0	Mm.204730	NM_010262	ENSMUSG00000034486	Gbx2	D130058E05Rik|Gbx-2|MMoxA|Stra7	gastrulation brain homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139405229-4	chr5	139405150	139405350	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028469, intron 2 of 4)	intron (NM_028469, intron 2 of 4)	-1137.0	NM_177000	319772.0	Mm.440271	NM_177000	ENSMUSG00000044092	C130050O18Rik	-	RIKEN cDNA C130050O18 gene	protein-coding	4.13242844638853	2.98046416167144	4.26269028610441	4.4933009185167	3.98420358556938	2.84330317125125	3.03541257782222	3.95758933418445	-0.726017358066069	0.192308780414869	0.670655636962211
Merged-chr5-68735374-4	chr5	68735261	68735461	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	606348.0	NM_175519	243043.0	Mm.234821	NM_175519	ENSMUSG00000037653	Kctd8	A730087N02Rik	potassium channel tetramerisation domain containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4758015-2	chr19	4757915	4758115	+	805.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025717, intron 2 of 3)	intron (NM_025717, intron 2 of 3)	1490.0	NM_025717	66704.0	Mm.396734	NM_025717	ENSMUSG00000033760	Rbm4b	4921506I22Rik|AI504630|AI506404|Lark2|Neosin	RNA binding motif protein 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-99202070-2	chr11	99201970	99202170	+	978.1666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	28947.0	NM_020618	57376.0	Mm.379086	NM_020618	ENSMUSG00000037935	Smarce1	2810417B20Rik|5830412H02Rik|9030408N19Rik|Baf27	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-73622643-2	chr7	73622543	73622743	+	874.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	63920.0	NR_033604	244061.0	Mm.484605	NR_033604	ENSMUSG00000108337	Gm4971	EG244061	Smad nuclear interacting protein 1 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-67438680-2	chr1	67438580	67438780	+	724.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER21A|LTR|ERV1	315653.0	NM_001080809	227231.0	Mm.343942	NM_001080809	ENSMUSG00000025991	Cps1	4732433M03Rik|CPS|D1Ucla3	carbamoyl-phosphate synthetase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165339870-2	chr2	165339770	165339970	+	594.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-13391.0	NM_207706	140579.0	Mm.35064	NM_080287	ENSMUSG00000017670	Elmo2	1190002F24Rik|CED-12	engulfment and cell motility 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-58497812-2	chr16	58497712	58497912	+	703.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357433, intron 2 of 10)	intron (NM_001357433, intron 2 of 10)	25614.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-73512560-4	chr15	73512445	73512645	+	987.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081066)	promoter-TSS (NM_001081066)	-15.0	NR_152151	105841.0	Mm.322557	NM_001081066	ENSMUSG00000036661	Dennd3	AI447457|E030003N15Rik	DENN/MADD domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180333291-2	chr1	180333191	180333391	+	759.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081175, exon 2 of 8)	exon (NM_001081175, exon 2 of 8)	-2742.0	NR_003623	277333.0	Mm.389223	NM_199472		Gm5069	EG277333	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-85353072-4	chr11	85352950	85353150	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166642)	promoter-TSS (NM_001166642)	-114.0	NM_001166642	192197.0	Mm.209989	NM_138681	ENSMUSG00000059439	Bcas3	1500019F07Rik|2610028P08Rik|AU021018|BC028339|K20D4|rudhira	breast carcinoma amplified sequence 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-51276727-4	chr3	51276627	51276827	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_073429)	promoter-TSS (NR_073429)	-34.0	NR_073429	67746.0	Mm.441177	NR_073429	ENSMUSG00000087440	4930577N17Rik	-	RIKEN cDNA 4930577N17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4674253-1	chr16	4674153	4674353	+	706.5	f0_balb.idr	intron (NM_030205, intron 3 of 27)	intron (NM_030205, intron 3 of 27)	5467.0	NM_030205	78885.0	Mm.325512	NM_030205	ENSMUSG00000039637	Coro7	0610011B16Rik|AW048373|AW556392	coronin 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-23245392-4	chr16	23245244	23245444	+	857.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252505, intron 1 of 7)	intron (NM_001252505, intron 1 of 7)	19323.0	NM_001252505	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91522251-4	chr16	91522145	91522345	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5299.0	NR_105786	102465190.0		NR_105786	ENSMUSG00000099308	Mir6367	Gm27467|mmu-mir-6367	microRNA 6367	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-36215729-2	chr17	36215629	36215829	+	933.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25578.0	NM_008208	15043.0	Mm.426002	NM_008208	ENSMUSG00000054128	H2-T3	H-2T3|H2-Tw3|MumuTL|TL	histocompatibility 2, T region locus 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27991811-2	chr17	27991714	27991914	+	638.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_181413, intron 10 of 24)	B4A|SINE|B4	82508.0	NM_181413	224650.0	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	0.0705824810045308	0.0900803422677619	0.778053071660513	0.822398192010035	0.0718069111017371	0.0915109197172772	0.273982278343049	0.254216848717468	-2.39796820216374	0.250214431455629	1
Merged-chr3-109252435-2	chr3	109252335	109252535	+	941.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-88248.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	0.962779855998787	0.575116988531631	0.564856591332171	1.3426630834455	0.545435357511208	0.794317963219638	1.41005135908372	1.03428880024263	0.364853033637272	0.820414539482082	0.998431161219273
Merged-chr6-116719116-4	chr6	116719007	116719207	+	973.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2349.0	NM_178768	319776.0	Mm.133120	NM_178768	ENSMUSG00000048108	Tmem72	C230095G01Rik	transmembrane protein 72	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-129275482-4	chr6	129275382	129275582	+	811.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033122)	promoter-TSS (NM_001033122)	-113.0	NM_001033122	12515.0	Mm.74745	NM_001033122	ENSMUSG00000030156	Cd69	5830438K24Rik|AI452015|AIM|VEA	CD69 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-29845275-4	chr5	29845168	29845368	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-109332.0	NR_028426	332993.0	Mm.473746	NR_028426		Gm5129	EG332993	predicted gene 5129	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-133130042-4	chr1	133129939	133130139	+	952.4833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1127.0	NM_133819	108954.0	Mm.293628	NM_133819	ENSMUSG00000046062	Ppp1r15b	1810033K10Rik|AI606441|C530022L24Rik|CReP	protein phosphatase 1, regulatory (inhibitor) subunit 15b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-75094451-2	chr8	75094351	75094551	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010442, intron 1 of 4)	B1_Mus2|SINE|Alu	833.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90542266-4	chr2	90542129	90542329	+	928.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	38418.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	1.79983474446418	1.15876476196084	1.30006675688463	1.73667866446608	1.21618997589886	1.16573406925315	0.923511624687437	1.83635093435067	-0.672122642856595	0.589221715441973	0.968865306825047
Merged-chr11-96863502-1	chr11	96863402	96863602	+	558.0	f1_c57bl6.idr	Intergenic	Intergenic	13109.0	NR_029562	387170.0		NR_029562	ENSMUSG00000065515	Mir152	Mirn152|mir-152|mmu-mir-152	microRNA 152	ncRNA	0.892170875682116	1.23246980386853	2.24803839310952	2.17619862287511	2.06926859624066	1.93488136434629	0.948442070382823	0.927841889339848	-0.506757307123111	0.701342849677827	0.998431161219273
Merged-chr5-143043510-4	chr5	143043408	143043608	+	956.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359851, intron 12 of 15)	intron (NM_001359851, intron 12 of 15)	69512.0	NM_207110	108086.0	Mm.381440	NM_080561	ENSMUSG00000045078	Rnf216	2810055G22Rik|AI647468|AU019462|C86502|F830018F18Rik|TRIAD3|UIP83|Ubce7ip1	ring finger protein 216	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-73934529-2	chr17	73934429	73934629	+	982.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011723, intron 6 of 35)	intron (NM_011723, intron 6 of 35)	15667.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-125346052-2	chr5	125345935	125346135	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-4941.0	NM_001205083	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	-0.618802996698496	-0.607328694272964	-0.611086729728348	-0.613986951272676	-0.618086468559668	0.0317600808888597	-0.610257766076773	-0.17212621731017	3.41989740960314	0.218146092618797	1
Merged-chr12-79625920-4	chr12	79625816	79626016	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	298817.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-113038134-4	chr6	113038024	113038224	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8178.0	NM_001355266	14911.0	Mm.781	NM_008188	ENSMUSG00000030264	Thumpd3	AW556087|Gt(ROSA)26asSor|Gtrosa26as	THUMP domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-55172370-2	chr9	55172270	55172470	+	667.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346658, intron 3 of 12)	intron (NM_001346658, intron 3 of 12)	22287.0	NM_001346658	109161.0	Mm.207894	NM_180600	ENSMUSG00000032307	Ube2q2	3010021M21Rik	ubiquitin-conjugating enzyme E2Q family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70444890-2	chr11	70444790	70444990	+	919.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6635.0	NR_106064	102465670.0		NR_106064	ENSMUSG00000099109	Mir7115	Gm27902|mmu-mir-7115	microRNA 7115	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-85894556-4	chr1	85894449	85894649	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022417)	promoter-TSS (NM_022417)	39.0	NM_022417	64294.0	Mm.29870	NM_022417	ENSMUSG00000026223	Itm2c	3110038L02Rik|BRI3|Bricd2c|E25|E25C|ITM3	integral membrane protein 2C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-23722659-1	chr17	23722559	23722759	+	618.0	f1_balb.idr	Intergenic	Intergenic	-3677.0	NM_023058	268930.0	Mm.182193	NM_023058	ENSMUSG00000023908	Pkmyt1	6230424P17|AW209059|Myt1	protein kinase, membrane associated tyrosine/threonine 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45247829-4	chr7	45247744	45247944	+	913.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001324535, intron 1 of 12)	B2_Mm2|SINE|B2	7091.0	NM_001324535	381884.0	Mm.490944	NM_001324535	ENSMUSG00000094152	Slc6a16	Gm1084	solute carrier family 6, member 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-110773343-4	chr7	110773256	110773456	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009667, intron 1 of 14)	intron (NM_009667, intron 1 of 14)	752.0	NM_009667	11717.0	Mm.3238	NM_009667	ENSMUSG00000005686	Ampd3	-	adenosine monophosphate deaminase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-144704765-2	chr3	144704665	144704865	+	895.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001282037, intron 5 of 10)	L1Md_F2|LINE|L1	15570.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-123198083-2	chr10	123197983	123198183	+	637.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1064.0	NM_001301628	14479.0	Mm.244209	NM_027604	ENSMUSG00000020124	Usp15	4921514G19Rik|AI327321|E430033I05Rik|Gcap18	ubiquitin specific peptidase 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-37613661-2	chr15	37613561	37613761	+	826.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359845, intron 2 of 6)	intron (NM_001359845, intron 2 of 6)	66913.0	NM_001359840	52589.0	Mm.283370	NM_134094	ENSMUSG00000051359	Ncald	AI848120|D030020D09Rik|D15Ertd412e	neurocalcin delta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45800690-4	chr7	45800602	45800802	+	965.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005511, intron 14 of 15)	intron (NM_001005511, intron 14 of 15)	13614.0	NM_011181	19158.0	Mm.272130	NM_011181	ENSMUSG00000003269	Cyth2	ARNO|CLM2|Pscd2	cytohesin 2	protein-coding	3.32100119551552	4.70787121883547	3.60486092657895	3.13383550374367	3.95496985922905	3.67059706045434	3.36130580015806	3.25426720564436	-0.364568347113643	0.519695903259067	0.947641799425091
Merged-chr16-18416380-3	chr16	18416273	18416473	+	893.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007744, intron 1 of 4)	intron (NM_007744, intron 1 of 4)	-2879.0	NM_001111063	12846.0	Mm.100940	NM_007744	ENSMUSG00000000326	Comt	Comt1|D16Wsu103e|D330014B15Rik	catechol-O-methyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-108714568-8	chr8	108714474	108714674	+	993.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007496)	promoter-TSS (NM_007496)	-70.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-46727719-2	chr13	46727619	46727819	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_175749, exon 1 of 22)	5' UTR (NM_175749, exon 1 of 22)	130.0	NM_175749	218210.0	Mm.255398	NM_175749	ENSMUSG00000021374	Nup153	B130015D15Rik|C88147	nucleoporin 153	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25275754-2	chr7	25275654	25275854	+	920.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001302811, intron 2 of 20)	intron (NM_001302811, intron 2 of 20)	-6425.0	NM_027882	71722.0	Mm.28833	NM_027882	ENSMUSG00000005442	Cic	1200010B10Rik|mKIAA0306	capicua transcriptional repressor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-117018662-4	chr2	117018565	117018765	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-102406.0	NM_001277256	114715.0	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124375614-4	chr6	124375506	124375706	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11120.0	NR_131162	72268.0	Mm.420740	NR_131162		1700027F06Rik	-	RIKEN cDNA 1700027F06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-6792950-2	chr18	6792850	6793050	+	834.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27783.0	NM_001278447	19330.0	Mm.132802	NM_181070	ENSMUSG00000073639	Rab18	AA959686	RAB18, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-88654882-4	chr1	88654803	88655003	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47288.0	NM_177305	320982.0	Mm.27968	NM_177305	ENSMUSG00000049866	Arl4c	A630084M22Rik|Arl7|LAK	ADP-ribosylation factor-like 4C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-52625377-4	chr3	52625278	52625478	+	946.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	108414.0	NR_153344	102631981.0	Mm.394225	NR_153344		Gm30173	-	predicted gene, 30173	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-57889326-2	chr15	57889226	57889426	+	689.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_024207, intron 1 of 7)	intron (NM_024207, intron 1 of 7)	3092.0	NM_024207	67819.0	Mm.289387	NM_024207	ENSMUSG00000022365	Derl1	1110021N07Rik|AI195141|AW551338|Derlin-1	Der1-like domain family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-145833383-2	chr2	145833283	145833483	+	997.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028724, intron 4 of 12)	intron (NM_028724, intron 4 of 12)	47267.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-86142707-4	chr3	86142619	86142819	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016959)	promoter-TSS (NM_016959)	-51.0	NM_016959	20091.0	Mm.391785	NM_016959	ENSMUSG00000028081	Rps3a1	Rps3a	ribosomal protein S3A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-69352332-3	chr10	69352255	69352455	+	873.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007659, intron 1 of 7)	intron (NM_007659, intron 1 of 7)	557.0	NM_007659	12534.0	Mm.281367	NM_007659	ENSMUSG00000019942	Cdk1	Cdc2|Cdc2a|p34<CDC2>	cyclin-dependent kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28357103-2	chr7	28357003	28357203	+	661.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5563.0	NR_028129	100302567.0		NR_028129		AF357399	MBI-142	snoRNA AF357399	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140642696-2	chr5	140642596	140642796	+	569.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001308040, intron 1 of 12)	intron (NM_001308040, intron 1 of 12)	6335.0	NM_001308040	78339.0	Mm.28947	NM_175274	ENSMUSG00000036565	Ttyh3	2900029G13Rik|AI414930|TTY3|mTTY3	tweety family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-106678933-4	chr4	106678799	106678999	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028209)	promoter-TSS (NM_028209)	45.0	NM_028209	72354.0	Mm.25806	NM_028209	ENSMUSG00000025413	Ttc4	2810002P21Rik|AF007005|L62	tetratricopeptide repeat domain 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-13963238-2	chr10	13963137	13963337	+	599.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2838.0	NM_001358783	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	0.441796705640188	0.471279439289179	0.461730516809597	1.3260849299061	0.870667775264238	1.02078562932255	0.46384534681206	1.1546010569862	0.709654296848304	0.687322529317552	1
Merged-chr17-33891645-1	chr17	33891545	33891745	+	572.0	f1_balb.idr	Intergenic	B1_Mur3|SINE|Alu	-1012.0	NM_001195298	100502766.0	Mm.335713	NM_001195298	ENSMUSG00000079553	Kifc1	100042970|Gm4137|HSET|KNSL2|Kifc5a|Knsl2a|Tctex-7|Tctex-7A|Tctex7|Tctex7a	kinesin family member C1	protein-coding	1.44055964599172	0.81320275102101	1.58303756259878	0.98614284961251	1.84988473720739	0.816392129034267	0.802083160442248	1.64039864136991	0.469155539042279	0.744490556529639	0.998431161219273
Merged-chr10-24133387-4	chr10	24133302	24133502	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15887.0	NM_001358563	53331.0	Mm.248042	NM_016797	ENSMUSG00000019998	Stx7	AI315064|AI317144|AW107239|Syn7	syntaxin 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-116923707-2	chr8	116923607	116923807	+	664.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_028131, intron 2 of 11)	ID_B1|SINE|B4	1967.0	NM_028131	72155.0	Mm.23185	NM_028131	ENSMUSG00000031756	Cenpn	2610510J17Rik|AI426416|AW545024	centromere protein N	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-47194284-2	chr14	47194183	47194383	+	619.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-4870.0	NM_008102	14528.0	Mm.10651	NM_008102	ENSMUSG00000037580	Gch1	GTP-CH|GTP-CH-I|GTPCH|Gch	GTP cyclohydrolase 1	protein-coding	2.20381765770958	2.21460767376086	2.13574481112621	1.91675334079293	2.22335482145383	3.46253346912061	2.42197225419368	1.27016901920259	0.990988631991685	0.286138268692966	0.790669838252385
Merged-chr10-77969882-4	chr10	77969779	77969979	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138301)	promoter-TSS (NM_138301)	-7.0	NM_138301	28240.0	Mm.276762	NM_138301	ENSMUSG00000009292	Trpm2	9830168K16Rik|C79133|LTRPC2|TRPC7|Trp7|Trrp7	transient receptor potential cation channel, subfamily M, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191333585-2	chr1	191333470	191333670	+	661.25	f0_balb.idr|f0_c57.idr	intron (NM_025864, intron 2 of 7)	intron (NM_025864, intron 2 of 7)	7605.0	NM_025864	66950.0	Mm.236300	NM_025864	ENSMUSG00000026627	Tmem206	2310028N02Rik|AI118576	transmembrane protein 206	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-101120429-4	chr10	101120316	101120516	+	930.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-378781.0	NR_152765	102639396.0	Mm.404529	NR_152765		Gm35722	-	predicted gene, 35722	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117197538-2	chr11	117197438	117197638	+	721.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2123.0	NM_001113486	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-50291034-4	chr11	50290921	50291121	+	959.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175334, intron 1 of 4)	intron (NM_175334, intron 1 of 4)	1315.0	NM_175334	103806.0	Mm.51116	NM_175334	ENSMUSG00000050567	Maml1	AI644666|AW743257|D930008C07Rik|Mam-1|Mam1|mKIAA0200	mastermind like transcriptional coactivator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-100618690-3	chr3	100618580	100618780	+	959.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010763, intron 7 of 12)	intron (NM_010763, intron 7 of 12)	66793.0	NM_010763	17156.0	Mm.271617	NM_010763	ENSMUSG00000008763	Man1a2	AI428775|AI528764|AI854422|Man1b|PCR2	mannosidase, alpha, class 1A, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81140303-2	chr10	81140203	81140403	+	728.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_010731, intron 1 of 2)	intron (NM_010731, intron 1 of 2)	4032.0	NM_010731	16969.0	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4396092-2	chr19	4395992	4396192	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001984, intron 1 of 20)	intron (NM_001001984, intron 1 of 20)	985.0	NM_001001984	225876.0	Mm.31941	NM_001001984	ENSMUSG00000054611	Kdm2a	100043628|5530401A10Rik|AA589516|AW536790|Cxxc8|Fbl11|Fbl7|Fbxl11|Gm4560|Jhdm1|Jhdm1a|lalina	lysine (K)-specific demethylase 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-87562551-4	chr3	87562458	87562658	+	876.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36980.0	NM_001359750	27049.0	Mm.219460	NM_012051	ENSMUSG00000003382	Etv3	AI414410|METS|Pe1	ets variant 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-104221159-2	chr8	104221059	104221259	+	706.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27399.0	NR_045642	57813.0	Mm.183110	NM_021028	ENSMUSG00000035824	Tk2	AU024611|mt-TK	thymidine kinase 2, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-116656217-4	chr4	116656115	116656315	+	821.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28|LTR|ERVL	-4541.0	NM_021473	58810.0	Mm.30085	NM_021473	ENSMUSG00000028692	Akr1a1	2610201A18Rik|Akr1a4	aldo-keto reductase family 1, member A1 (aldehyde reductase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-37137933-6	chr10	37137829	37138029	+	924.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008538, intron 1 of 1)	intron (NM_008538, intron 1 of 1)	997.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-156025294-4	chr1	156025188	156025388	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144791, intron 4 of 6)	intron (NM_144791, intron 4 of 6)	9529.0	NM_001160019	208263.0	Mm.211654	NM_144791	ENSMUSG00000026466	Tor1aip1	LAP1|Lap1B	torsin A interacting protein 1	protein-coding	5.29573773830976	5.10443849505346	4.49407796390209	5.164936634906	5.23870640923524	4.22032879801174	4.77668057793064	4.84923557105488	-0.265196183554568	0.454628252775122	0.919120493489568
Merged-chr3-138976835-1	chr3	138976735	138976935	+	988.0	f1_balb.idr	intron (NM_001356388, intron 4 of 13)	L1_Mur3|LINE|L1	98366.0	NM_145544	229877.0	Mm.28893	NM_145544	ENSMUSG00000028149	Rap1gds1	BC011279|GDS1	RAP1, GTP-GDP dissociation stimulator 1	protein-coding	0.67302517298708	0.44611580755975	1.13799453540986	0.435566878335675	1.03467019128123	0.447468915501187	0.874179455129122	0.436364126786201	0.0626104264075681	0.97275660899981	1
Merged-chr5-24674423-4	chr5	24674315	24674515	+	943.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MMERGLN-int|LTR|ERV1	-11400.0	NM_016736	53312.0	Mm.5856	NM_016736	ENSMUSG00000028954	Nub1	4931404D21Rik|6330412F12Rik|BS4|NY-REN-18	negative regulator of ubiquitin-like proteins 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-112643683-2	chr12	112643583	112643783	+	743.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-1145.0	NM_001161737	30954.0	Mm.289812	NM_013929	ENSMUSG00000064326	Siva1	CD27bp|Siva	SIVA1, apoptosis-inducing factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-8370089-4	chr10	8370039	8370239	+	668.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177387, intron 2 of 7)	intron (NM_177387, intron 2 of 7)	148686.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-83440287-2	chr9	83440187	83440387	+	609.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_102437, intron 1 of 2)	intron (NR_102437, intron 1 of 2)	812.0	NM_027448	75782.0	Mm.199698	NM_027448	ENSMUSG00000032258	Lca5	4930431B11Rik|5730406O13Rik|AV274874|ORF64	Leber congenital amaurosis 5 (human)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-109548974-4	chr5	109548892	109549092	+	978.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10001.0	NM_016715	57914.0	Mm.35771	NM_016715	ENSMUSG00000033467	Crlf2	CRLM2|Ly114|Tpte2|Tslpr	cytokine receptor-like factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-89332377-3	chr7	89332286	89332486	+	618.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360746, intron 2 of 14)	intron (NM_001360746, intron 2 of 14)	6401.0	NM_028343	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91938951-2	chr2	91938851	91939051	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166597, intron 15 of 31)	intron (NM_001166597, intron 15 of 31)	5979.0	NR_105965	102465604.0		NR_105965	ENSMUSG00000098651	Mir6999	Gm27673|mmu-mir-6999	microRNA 6999	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-44167879-4	chr4	44167689	44167889	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175201)	promoter-TSS (NM_175201)	167.0	NM_001355181	73469.0	Mm.262859	NM_175201	ENSMUSG00000035696	Rnf38	1700065B19Rik|2610202O07Rik|AA673263|Oip1	ring finger protein 38	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-127143635-2	chr6	127143535	127143735	+	664.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009829, intron 3 of 4)	intron (NM_009829, intron 3 of 4)	-5754.0	NR_040274	77558.0	Mm.358918	NR_040273	ENSMUSG00000097166	9330179D12Rik	-	RIKEN cDNA 9330179D12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-93972435-2	chr11	93972321	93972521	+	637.5	f0_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3900.0	NM_008704	18102.0	Mm.439702	NM_008704	ENSMUSG00000037601	Nme1	AL024257|NDPK-A|NM23-M1|NM23A	NME/NM23 nucleoside diphosphate kinase 1	protein-coding	2.88415412163527	3.00564035539652	3.87969283670523	3.39308145370298	3.6269193987228	3.26308365202788	3.25545152199312	3.15612262282133	-0.015162006931832	0.979222356311464	0.998431161219273
Merged-chr9-45963540-2	chr9	45963440	45963640	+	594.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8291.0	NM_172257	214597.0	Mm.379345	NM_172257	ENSMUSG00000034908	Sidt2	B930096O19|BC023957|CGI-40	SID1 transmembrane family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-35938016-6	chr15	35937892	35938092	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053071, intron 1 of 3)	CpG	254.0	NM_053071	12864.0	Mm.548	NM_053071	ENSMUSG00000014313	Cox6c	-	cytochrome c oxidase subunit VIc	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-142343945-2	chr3	142343845	142344045	+	651.900024	f1_balb.idr|f1_c57bl6.idr	intron (NM_001190857, intron 2 of 7)	intron (NM_001190857, intron 2 of 7)	47905.0	NM_022554	56376.0	Mm.117709	NM_019808	ENSMUSG00000028273	Pdlim5	1110001A05Rik|AI987914|C87059|Enh|Enh1|Enh2|Enh3|LIM	PDZ and LIM domain 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-94629131-4	chr15	94629067	94629267	+	913.505981	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178789)	promoter-TSS (NM_178789)	-18.0	NM_178789	320709.0	Mm.74873	NM_178789	ENSMUSG00000063296	Tmem117	B930062P21Rik	transmembrane protein 117	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-6722942-2	chr2	6722842	6723042	+	760.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110232, intron 3 of 15)	intron (NM_001110232, intron 3 of 15)	-1280.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-148621758-3	chr6	148621651	148621851	+	887.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7442.0	NR_045867	622319.0	Mm.491049	NM_001037912	ENSMUSG00000070995	Gm6313	EG622319	predicted gene 6313	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-53088456-3	chr18	53088362	53088562	+	878.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-87830.0	NM_001357463	67804.0	Mm.252171	NM_026386	ENSMUSG00000034484	Snx2	0610030A03Rik	sorting nexin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35669281-2	chr17	35669181	35669381	+	579.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010364, intron 11 of 13)	intron (NM_010364, intron 11 of 13)	-1689.0	NM_175137	68915.0	Mm.32002	NM_175137	ENSMUSG00000038838	Vars2	1190004I24Rik|Vars2l|mKIAA1885	valyl-tRNA synthetase 2, mitochondrial	protein-coding	0.464637172007325	0.209434411443829	0.202715162599464	0.745320304611265	0.47161222847558	0.210945936567145	0.20419911813454	1.02401069319155	0.634177826958477	0.744929491855378	1
Merged-chr1-151701482-2	chr1	151701382	151701582	+	647.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_022018, intron 9 of 13)	intron (NM_022018, intron 9 of 13)	53245.0	NR_151474	102640772.0		NR_151473	ENSMUSG00000100594	2810414N06Rik	-	RIKEN cDNA 2810414N06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84423878-2	chr8	84423760	84423960	+	602.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252060, intron 1 of 47)	B4|SINE|B4	8496.0	NM_001252061	12286.0	Mm.334658	NM_007578	ENSMUSG00000034656	Cacna1a	APCA|BI|Caca1a|Cacnl1a4|Cav2.1|Ccha1a|EA2|FHM|HPCA|MHP|MHP1|SCA6|alpha1A|la|nmf352|rkr|smrl|tg	calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	protein-coding	1.03671851558097	0.898185591135382	1.85433933038124	0.862593325564366	1.7964530083954	2.05289343721045	0.882771855211641	1.99267939775236	1.64345765365636	0.221319659422191	0.71266593498321
Merged-chr2-128700333-2	chr2	128700233	128700433	+	557.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 1 of 18)	intron (NM_008587, intron 1 of 18)	1418.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-51031118-2	chr8	51031018	51031218	+	725.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	663006.0	NR_046067	100039954.0	Mm.400419	NR_046067	ENSMUSG00000110281	Gm2516	-	predicted gene 2516	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44141423-2	chr9	44141323	44141523	+	798.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023061, intron 15 of 15)	intron (NM_023061, intron 15 of 15)	6765.0	NM_001359530	84004.0	Mm.275003	NM_023061	ENSMUSG00000032135	Mcam	1-gicerin|AV025631|CD146|CD149|Muc18|s-endo|s-gicerin	melanoma cell adhesion molecule	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-60205213-4	chr14	60205099	60205299	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001362440)	TTS (NM_001362440)	23716.0	NR_030458	751526.0		NR_030458	ENSMUSG00000076270	Mir719	Mirn719|mmu-mir-719	microRNA 719	ncRNA	3.43920407306508	4.18957937762336	3.2757449391526	3.62414569840549	3.67038021112229	4.09385328058335	3.59329643396182	4.22934618986405	0.359652860020238	0.470123624783125	0.925692944111129
Merged-chr4-65126164-2	chr4	65126064	65126264	+	651.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021362, intron 1 of 21)	intron (NM_021362, intron 1 of 21)	1990.0	NM_021362	18491.0	Mm.317854	NM_021362	ENSMUSG00000028370	Pappa	8430414N03Rik|IGFBP-4ase|PAG1|PAPP-A	pregnancy-associated plasma protein A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-88228776-4	chr10	88228694	88228894	+	853.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026070, intron 5 of 6)	intron (NM_026070, intron 5 of 6)	27697.0	NM_027487	67282.0	Mm.208465	NM_026070	ENSMUSG00000020056	Washc3	2900091E11Rik|5730495F03Rik|Ccdc53	WASH complex subunit 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-56947659-3	chr9	56947563	56947763	+	866.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-3261.0	NM_178374	66069.0	Mm.220984	NM_178374	ENSMUSG00000055334	Snupn	0610031A09Rik|Rnut1|Snupn1	snurportin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27038245-2	chr2	27038145	27038345	+	655.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10247.0	NM_001177627	227659.0	Mm.41203	NM_172659	ENSMUSG00000036067	Slc2a6	A330096C23|F630103L12Rik|Glut6|Glut9	solute carrier family 2 (facilitated glucose transporter), member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-20784981-1	chr13	20784881	20785081	+	682.333313	f1_balb.idr	Intergenic	Intergenic	-9132.0	NM_001281854	27052.0	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	2.76043290341056	2.4018983681741	2.48624729918184	2.41022623887784	4.02987999269039	3.73016346660084	3.61102093871916	2.57211788354258	1.8183033578692	0.00597179842971116	0.0763631710873066
Merged-chr11-50024078-2	chr11	50023978	50024178	+	588.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1253.0	NM_021540	59044.0	Mm.359004	NM_021540	ENSMUSG00000020376	Rnf130	2510042A13Rik|G1RZFP|G1rp|GOLIATH|GP	ring finger protein 130	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-6527387-2	chr11	6527287	6527487	+	809.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045893, intron 2 of 3)	intron (NR_045893, intron 2 of 3)	1373.0	NR_045893	100041286.0	Mm.459507	NR_045893	ENSMUSG00000085156	Snhg15	Gm11974	small nucleolar RNA host gene 15	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-143506878-2	chr7	143506778	143506978	+	636.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-4354.0	NM_009434	22113.0	Mm.334344	NM_009434	ENSMUSG00000010760	Phlda2	Ipl|Tssc3	pleckstrin homology like domain, family A, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81399713-4	chr15	81399616	81399816	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347075)	promoter-TSS (NM_001347075)	-22.0	NM_133726	70356.0	Mm.180337	NM_133726	ENSMUSG00000022403	St13	1110007I03Rik|3110002K08Rik|AW555194|HIP|HOP|HSPABP|HSPABP1|PRO0786|SNC6|p48	suppression of tumorigenicity 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-144269459-2	chr2	144269359	144269559	+	864.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_024225, intron 1 of 12)	intron (NM_024225, intron 1 of 12)	1113.0	NM_024225	69178.0	Mm.273379	NM_024225	ENSMUSG00000027423	Snx5	0910001N05Rik|1810032P22Rik|AU019504|D2Ertd52e	sorting nexin 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-21651966-3	chr16	21651867	21652067	+	631.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001001881, exon 2 of 2)	3' UTR (NM_001001881, exon 2 of 2)	42698.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-110601520-4	chr13	110601424	110601624	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	206480.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	1.64018065727146	1.34537457822368	1.64347864784218	2.11983025967447	2.0987150430176	1.11713741408347	1.50059227807425	1.85013218713252	-0.0530706361397828	0.962131951015397	0.998431161219273
Merged-chr17-35241935-7	chr17	35241825	35242025	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252457)	promoter-TSS (NM_001252457)	179.0	NM_019693	53817.0	Mm.439827	NM_019693	ENSMUSG00000019432	Ddx39b	0610030D10Rik|AI428441|Bat-1|Bat1|Bat1a|D17H6S81E|D17H6S81E-1|D6S81Eh	DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-75766948-4	chr16	75766850	75767050	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030201)	promoter-TSS (NM_030201)	-132.0	NM_030201	110920.0	Mm.26704	NM_030201	ENSMUSG00000032932	Hspa13	1600002I10Rik|AV006182|B230217N24Rik|Stch	heat shock protein 70 family, member 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-68344459-2	chr8	68344359	68344559	+	822.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028182, intron 7 of 8)	intron (NM_028182, intron 7 of 8)	-24000.0	NR_038189	73609.0	Mm.443247	NR_038181	ENSMUSG00000085197	1700125H03Rik	4930510D22Rik	RIKEN cDNA 1700125H03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-62040538-6	chr15	62040379	62040579	+	836.722229	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132746, intron 1 of 6)	intron (NR_132746, intron 1 of 6)	1222.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-57644586-4	chr11	57644507	57644707	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134189)	promoter-TSS (NM_134189)	-835.0	NM_134189	171212.0	Mm.271670	NM_134189	ENSMUSG00000020520	Galnt10	AU018154|C330012K04Rik|GalNAc-T10|GalNAc-T9|Galnt9|ppGaNTase	polypeptide N-acetylgalactosaminyltransferase 10	protein-coding	1.4279915638819	0.946122703238196	0.597651804034472	0.730396625890855	0.687591659515289	0.413456104652242	0.404465331411989	0.396725639773807	-3.0081622245709	0.0885364483483545	1
Merged-chr10-81410811-5	chr10	81410452	81410652	+	920.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152732, intron 1 of 1)	intron (NR_152732, intron 1 of 1)	977.0	NR_152732	102634174.0	Mm.392213	NR_152732	ENSMUSG00000085327	Gm16104	-	predicted gene 16104	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-193174530-2	chr1	193174430	193174630	+	989.25	f1_balb.idr|f1_c57bl6.idr	TTS (NM_153137)	TTS (NM_153137)	953.0	NM_181048	319266.0	Mm.482460	NM_181048	ENSMUSG00000079144	A130010J15Rik	-	RIKEN cDNA A130010J15 gene	protein-coding	0.637974023528915	0.192881382105553	0.843644376047044	0.182385970894831	0.551133913008537	0.194217419260051	0.188262716377	0.48473732565748	-0.910041429747311	0.647055221499313	1
Merged-chr4-13281593-4	chr4	13281514	13281714	+	786.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	374777.0	NM_001171801	208820.0	Mm.12057	NM_173746	ENSMUSG00000055963	Triqk	C130086A10|Gm11818	triple QxxK/R motif containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6263793-2	chr19	6263693	6263893	+	589.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029830)	promoter-TSS (NR_029830)	-850.0	NR_029830	723957.0		NR_029830	ENSMUSG00000065582	Mir194-2	Mirn194-2|mir-194-2	microRNA 194-2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-130023861-3	chr5	130023761	130023961	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133768, intron 2 of 16)	intron (NM_133768, intron 2 of 16)	520.0	NM_133768	109900.0	Mm.23869	NM_133768	ENSMUSG00000025533	Asl	2510006M18Rik|ASAL	argininosuccinate lyase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-142325227-2	chr5	142325127	142325327	+	565.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-76270.0	NM_199068	17425.0	Mm.24214	NM_010812	ENSMUSG00000056493	Foxk1	A630048H08Rik|AI463295|Gm10868|Mnf	forkhead box K1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-79006820-4	chr12	79006722	79006922	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178745, intron 1 of 2)	CpG	455.0	NM_178745	268567.0	Mm.341747	NM_178745	ENSMUSG00000046157	Tmem229b	6330442E10Rik|9830138K24|AU019070	transmembrane protein 229B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-122774341-4	chr10	122774254	122774454	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110218, intron 1 of 9)	intron (NM_001110218, intron 1 of 9)	95039.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-30994079-2	chr13	30993979	30994179	+	636.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20032.0	NM_025588	66482.0	Mm.293510	NM_025588	ENSMUSG00000021357	Exoc2	2410030I24Rik|AI648199|Sec5|Sec5l1	exocyst complex component 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-58214897-4	chr11	58214785	58214985	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019440)	promoter-TSS (NM_019440)	-92.0	NM_019440	54396.0	Mm.458517	NM_019440	ENSMUSG00000069874	Irgm2	AI481100|GTPI|Ifggd2|Iigp2	immunity-related GTPase family M member 2	protein-coding	5.55167825642273	6.65741511746836	6.10191338518092	6.36436797271295	6.23679873129408	5.7362373857701	6.30441405273569	6.26820007323371	-0.0634701716676602	0.807066818635912	0.998431161219273
Merged-chr8-94205935-4	chr8	94205850	94206050	+	923.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8614.0	NM_001357266	71805.0	Mm.458170	NM_172410	ENSMUSG00000032939	Nup93	2410008G02Rik	nucleoporin 93	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115414309-2	chr11	115414195	115414395	+	849.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5624.0	NM_027862	71679.0	Mm.371641	NM_027862	ENSMUSG00000034566	Atp5h	0610009D10Rik	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit D	protein-coding	1.06268301722423	1.46984058695021	1.41323574785951	1.36839082158194	1.0708687912817	0.800755931521462	1.5370413764261	0.777924939035579	-1.01775583376517	0.457076507251129	0.919371384099387
Merged-chr9-85577556-4	chr9	85577468	85577668	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	171766.0	NM_001081282	108837.0	Mm.22315	NM_175371	ENSMUSG00000035941	Ibtk	5430411K16Rik|AA409502|BTKI|mKIAA1417	inhibitor of Bruton agammaglobulinemia tyrosine kinase	protein-coding	4.79793315496058	4.83127394144949	4.48119152917204	4.64940934192174	4.98538171301877	4.54596023167017	4.93102417522601	5.22828524367782	0.308172427693504	0.362529891914967	0.858187939866503
Merged-chr5-125340049-6	chr5	125339833	125340033	+	816.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205083, intron 1 of 10)	intron (NM_001205083, intron 1 of 10)	1161.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119238302-7	chr11	119238188	119238388	+	930.6785890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175430, intron 6 of 18)	(TTTG)n|Simple_repeat|Simple_repeat	9716.0	NM_175430	207607.0	Mm.189885	NM_175430	ENSMUSG00000039963	Ccdc40	B930008I02Rik	coiled-coil domain containing 40	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-25164926-4	chr12	25164821	25165021	+	824.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35747.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	3.12429005398537	3.31985901699834	3.74723958458314	3.51793271328688	3.15054216096583	2.08249075282518	3.13125166515979	3.93837010398525	-0.316992871895223	0.617730567488716	0.977517868708383
Merged-chr16-76563024-3	chr16	76562920	76563120	+	723.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14225.0	NR_155449	102632730.0		NR_155449		Gm30726	-	predicted gene, 30726	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-35395774-2	chr7	35395674	35395874	+	770.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_178643, intron 1 of 3)	B1_Mur4|SINE|Alu	993.0	NM_178643	101831.0	Mm.389855	NM_178643	ENSMUSG00000030493	Faap24	AW124591|AW538696|C230052I12Rik	Fanconi anemia core complex associated protein 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-113098744-4	chr12	113098707	113098907	+	873.1749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346696, intron 1 of 19)	CpG	529.0	NM_054081	116870.0	Mm.212577	NM_054081	ENSMUSG00000021144	Mta1	-	metastasis associated 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-84949621-2	chr18	84949521	84949721	+	862.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025969, intron 1 of 5)	intron (NM_025969, intron 1 of 5)	1903.0	NM_025969	67105.0	Mm.250617	NM_025969	ENSMUSG00000024645	Timm21	1700034H14Rik|2700002I20Rik	translocase of inner mitochondrial membrane 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-6747660-2	chr17	6747560	6747760	+	887.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009510, intron 6 of 12)	intron (NM_009510, intron 6 of 12)	35120.0	NM_009510	22350.0	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-39004097-4	chr6	39004002	39004202	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 5 of 12)	CR1_Mam|LINE|CR1	63484.0	NR_040523	69986.0	Mm.490941	NR_040523	ENSMUSG00000100121	1700025N23Rik	-	RIKEN cDNA 1700025N23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-31455675-2	chr15	31455575	31455775	+	548.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_172606)	TTS (NM_172606)	-1986.0	NM_145852	252967.0	Mm.436668	NM_145852	ENSMUSG00000022236	Ropn1l	ASP|AV047578|Akapasp	ropporin 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81575311-2	chr10	81575211	81575411	+	739.333313	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252401)	promoter-TSS (NM_001252401)	24.0	NM_001252401	21886.0	Mm.38608	NM_019725	ENSMUSG00000034771	Tle2	Grg2|mKIAA4188	transducin-like enhancer of split 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-54813914-1	chr1	54813814	54814014	+	583.0	f1_balb.idr	intron (NM_001081433, intron 2 of 27)	intron (NM_001081433, intron 2 of 27)	112473.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	-0.751865186780131	-0.741908133474995	-0.745175181816897	-0.442047935960996	-0.097968628421821	-0.74117106288454	-0.744455009670026	-0.747253003233345	1.30796655098015	0.660748145409838	1
Merged-chr2-71338274-4	chr2	71338174	71338374	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172436, intron 3 of 17)	intron (NM_172436, intron 3 of 17)	29280.0	NM_172436	78830.0	Mm.30928	NM_172436	ENSMUSG00000027010	Slc25a12	2610002D09Rik|AI839531|B230107K20Rik|BB129864	solute carrier family 25 (mitochondrial carrier, Aralar), member 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-100013056-4	chr12	100012955	100013155	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164426, intron 2 of 2)	MLT1A0|LTR|ERVL-MaLR	48556.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-31614927-2	chr15	31614827	31615027	+	656.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356313, intron 5 of 5)	L1MC4|LINE|L1	12811.0	NM_001356313	68073.0	Mm.119185	NM_026546	ENSMUSG00000039065	Fam173b	A930016P21Rik|AA987072	family with sequence similarity 173, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-35150163-3	chr7	35150055	35150255	+	945.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30862.0	NM_007678	12606.0	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	3.34251094985505	3.25610919928544	3.05221739688464	2.86395674922054	3.09666341712354	3.53733736720877	3.0757245919106	2.63869028830721	-0.0357306834632811	0.953620512780226	0.998431161219273
Merged-chr8-85028113-2	chr8	85028013	85028213	+	767.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026760, intron 1 of 2)	MER20|DNA|hAT-Charlie	1280.0	NM_026760	68544.0	Mm.196005	NM_026760	ENSMUSG00000041203	Trir	1110002H14Rik|2310036O22Rik|AI854688	telomerase RNA component interacting RNase	protein-coding	-1.56355737717652	-1.81244775989375	-1.82128546162293	-1.82854501295842	-1.83962066705452	-1.81053259306168	-1.81928479966835	-1.82724555674025	-1.28500227969968	0.715751224811686	1
Merged-chr14-27038959-4	chr14	27038851	27039051	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134437)	promoter-TSS (NM_134437)	-50.0	NM_134437	171463.0	Mm.206726	NM_027265	ENSMUSG00000040717	Il17rd	2810004A10Rik|AI428510|Sef|Sef-S	interleukin 17 receptor D	protein-coding	5.09684106205416	5.50216792589472	4.51075224459678	5.70424366390853	4.5320360964616	4.69425608791873	5.49439224002259	4.61204701529221	-0.454959749362161	0.217271135157246	0.707733686773749
Merged-chr6-87462787-2	chr6	87462687	87462887	+	658.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037727, intron 10 of 10)	intron (NM_001037727, intron 10 of 10)	33540.0	NR_104483	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-25680276-2	chr15	25680176	25680376	+	646.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_019472, intron 2 of 40)	intron (NM_019472, intron 2 of 40)	57726.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-36836207-2	chr5	36836107	36836307	+	598.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5558.0	NM_008550	17160.0	Mm.761	NM_008550	ENSMUSG00000029119	Man2b2	mKIAA0935	mannosidase 2, alpha B2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-51161807-3	chr13	51161709	51161909	+	883.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9216.0	NM_029173	75124.0	Mm.179243	NM_029173	ENSMUSG00000021396	Nxnl2	4930519N16Rik|Rdcvf2	nucleoredoxin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-170330750-3	chr2	170330652	170330852	+	699.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25609.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-9671396-3	chr4	9671303	9671503	+	946.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2059.0	NM_001290367	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-29620443-2	chr6	29620343	29620543	+	956.8333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10594.0	NM_001347079	320938.0	Mm.276381	NM_177296	ENSMUSG00000012535	Tnpo3	5730544L10Rik|C430013M08Rik|C81142|D6Ertd313e|Trn-SR|mKIAA4133	transportin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-102977400-4	chr2	102977306	102977506	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-75741.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-49307246-2	chr13	49307146	49307346	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_015759, intron 1 of 17)	intron (NM_015759, intron 1 of 17)	1962.0	NM_015759	30938.0	Mm.291089	NM_015759	ENSMUSG00000037946	Fgd3	5830461L01Rik|ZFYVE5	FYVE, RhoGEF and PH domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96635464-4	chr3	96635328	96635528	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162387)	promoter-TSS (NM_001162387)	-2.0	NM_011069	18632.0	Mm.20901	NM_011069	ENSMUSG00000028102	Pex11b	PEX11beta|Pex11pbeta	peroxisomal biogenesis factor 11 beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-10831482-3	chr8	10831389	10831589	+	778.977783	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	50965.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-44962991-4	chr16	44962879	44963079	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027578, intron 4 of 4)	MIR3|SINE|MIR	19301.0	NM_001128132	74603.0	Mm.297337	NM_027578	ENSMUSG00000036172	Cd200r3	4733401I18Rik|4833409J19Rik|AI505817|BB106877|mCD200RLb	CD200 receptor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3391886-4	chr4	3391801	3392001	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MMERVK10D3_LTR|LTR|ERVK	-145189.0	NR_037306	100499523.0		NR_037306	ENSMUSG00000094253	Mir3471-2	mmu-mir-3471-2	microRNA 3471-2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-84619341-2	chr2	84619241	84619441	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355064, intron 5 of 18)	intron (NM_001355064, intron 5 of 18)	30139.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-66435759-1	chr18	66435659	66435859	+	692.0	f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	-22845.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-119053823-4	chr4	119053733	119053933	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_131914)	TTS (NR_131914)	15278.0	NR_131914	433751.0	Mm.224312	NR_131914	ENSMUSG00000066060	Gm12866	-	predicted gene 12866	ncRNA	3.25720991730976	3.93184715107895	2.93257394263363	3.82389550009006	3.55362675900085	3.75116365687122	2.82132358667388	3.18983345536262	-0.264813932697732	0.645142174435962	0.983701068654072
Merged-chr7-143288371-2	chr7	143288271	143288471	+	730.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_001461, exon 1 of 1)	non-coding (NR_001461, exon 1 of 1)	8176.0	NR_001461	63830.0	Mm.356096	NR_001461	ENSMUSG00000101609	Kcnq1ot1	Kvlqt1-as|Lit1|Tssc8	KCNQ1 overlapping transcript 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134266946-1	chr6	134266846	134267046	+	639.5	f0_balb.idr	3' UTR (NM_007961, exon 8 of 8)	3' UTR (NM_007961, exon 8 of 8)	-129383.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-32657443-1	chr4	32657343	32657543	+	1000.0	f0_balb.idr	intron (NM_001081392, intron 1 of 101)	CpG	324.0	NM_001081392	100019.0	Mm.24627	NM_133874	ENSMUSG00000058006	Mdn1	4833432B22Rik|A130070M06|AA958993|D4Abb1e|Gm135	midasin AAA ATPase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-88120820-2	chr17	88120720	88120920	+	831.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4692.0	NM_001190356	225058.0	Mm.312053	NM_001190356		Gm4832	EG225058	predicted gene 4832	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-48829279-3	chr16	48829175	48829375	+	697.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12419.0	NM_023881	57263.0	Mm.21123	NM_023881	ENSMUSG00000022650	Retnlb	9030012B21Rik|Fizz2|RELMbeta|Relmb|Xcp3	resistin like beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-170160742-3	chr1	170160650	170160850	+	842.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133806, intron 3 of 10)	intron (NM_133806, intron 3 of 10)	14214.0	NM_133806	107652.0	Mm.27969	NM_133806	ENSMUSG00000026670	Uap1	AA420407|AA437972|AGX-1|AGX-2|AGX1|AgX|ESTM38|SPAG2	UDP-N-acetylglucosamine pyrophosphorylase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-12812945-1	chr19	12812845	12813045	+	552.0	f1_c57bl6.idr	intron (NM_134152, intron 3 of 8)	intron (NM_134152, intron 3 of 8)	14366.0	NM_134152	107321.0	Mm.313136	NM_134152	ENSMUSG00000024696	Lpxn	4933402K05Rik|A530083L21Rik|AV278559|LDPL	leupaxin	protein-coding	-0.537561945370311	-0.663074104054105	-0.666103949948218	-0.264916630530951	-0.671703570793036	-0.662389017805328	-0.665437017829002	-0.259420333935847	-0.328667401019035	0.904943260610567	1
Merged-chr14-20257181-3	chr14	20257101	20257301	+	660.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11961.0	NM_029006	74571.0	Mm.105571	NM_029006	ENSMUSG00000023387	Kcnk16	4731413G05Rik|TALK-1|TALK1	potassium channel, subfamily K, member 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-24950942-2	chr12	24950842	24951042	+	548.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026037, intron 8 of 12)	intron (NM_026037, intron 8 of 12)	-23990.0	NM_001081378	77480.0	Mm.250641	NM_001081378	ENSMUSG00000036333	Kidins220	3110039L19Rik|AI194387|AI316525|C330002I19Rik|mKIAA1250	kinase D-interacting substrate 220	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-57976087-4	chr15	57975978	57976178	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9825.0	NM_173862	239463.0	Mm.221241	NM_173862	ENSMUSG00000051225	Fam83a	-	family with sequence similarity 83, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131690014-4	chr1	131689977	131690177	+	815.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145509, intron 1 of 5)	intron (NM_145509, intron 1 of 5)	1382.0	NM_145509	226421.0	Mm.44508	NM_145509	ENSMUSG00000052688	Rab7b	5430435G22Rik	RAB7B, member RAS oncogene family	protein-coding	2.96966674329038	3.65749372904611	2.14548183798464	2.07940614551153	3.47939637886657	3.45062466800938	2.94437181532303	3.75853493960683	0.923815544468395	0.175977218958924	0.645775639984829
Merged-chr4-141368330-4	chr4	141368273	141368473	+	696.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085513, intron 1 of 6)	CpG	181.0	NM_001085513	277743.0	Mm.294614	NM_001085513	ENSMUSG00000006218	Fam131c	Gm693	family with sequence similarity 131, member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-53579093-3	chr19	53578993	53579193	+	857.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21303.0	NM_007790	13006.0	Mm.14910	NM_007790	ENSMUSG00000024974	Smc3	Bamacan|Cspg6|HCAP|Mmip1|SMC-3|SmcD	structural maintenance of chromosomes 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-40543712-4	chr12	40543583	40543783	+	949.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	97630.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-35333985-4	chr7	35333882	35334082	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027897)	promoter-TSS (NM_027897)	-255.0	NM_027897	52428.0	Mm.286600	NM_027897	ENSMUSG00000030494	Rhpn2	1300002E07Rik|AA536890|C85860|D7Ertd784e	rhophilin, Rho GTPase binding protein 2	protein-coding	3.18169445232703	3.92896298714467	3.93734690254883	2.92343415248683	4.26122433644074	4.7178879618175	4.15048127335765	2.94032358283658	0.835057467293079	0.130111819057952	0.565131154087395
Merged-chr9-123931915-4	chr9	123931807	123932007	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36785.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-15498268-4	chr17	15498177	15498377	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011185)	promoter-TSS (NM_011185)	-1.0	NM_011185	19170.0	Mm.32912	NM_011185	ENSMUSG00000014769	Psmb1	AA409053|C81484|Lmpc5	proteasome (prosome, macropain) subunit, beta type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-19344049-4	chr2	19343948	19344148	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_126563)	promoter-TSS (NR_126563)	-269.0	NR_126563	108871.0	Mm.107666	NR_126563		4930447M23Rik	-	RIKEN cDNA 4930447M23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-26638165-2	chr2	26638065	26638265	+	739.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028572)	promoter-TSS (NR_028572)	-180.0	NR_028572	100306955.0	Mm.27103	NR_028572	ENSMUSG00000097052	Snora43	ACA43	small nucleolar RNA, H/ACA box 43	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-121282709-1	chr14	121282609	121282809	+	558.0	f1_balb.idr	3' UTR (NM_134082, exon 27 of 27)	3' UTR (NM_134082, exon 27 of 27)	34003.0	NR_155502	320268.0	Mm.435974	NR_155502		B930095G15Rik	-	RIKEN cDNA B930095G15 gene	ncRNA	1.08809313402115	1.70801197595223	0.937164471140789	1.59429211479946	1.62922747881182	1.72197779918108	2.16336415555615	0.92507797292334	1.01546924281315	0.419640475124061	0.899498409000238
Merged-chr1-171470262-1	chr1	171470162	171470362	+	608.0	f1_balb.idr	Intergenic	ID_B1|SINE|B4	32701.0	NM_172647	16456.0	Mm.294882	NM_172647	ENSMUSG00000038235	F11r	9130004G24|AA638916|ESTM33|JAM|JAM-1|JAM-A|Jcam|Jcam1|Ly106	F11 receptor	protein-coding	1.09024021485394	0.829597595515553	0.817497528577492	1.2763474026845	1.42483089680111	1.37503932818874	1.56031413620047	1.40075559585622	1.8841764537556	0.16145171742305	0.622327384549716
Merged-chr3-51652916-4	chr3	51652797	51652997	+	862.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8282.0	NM_174995	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-149164720-2	chr5	149164620	149164820	+	630.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_015478, intron 1 of 2)	RSINE1|SINE|B4	-8528.0	NR_028061	667410.0	Mm.441522	NR_028061		Gm8615	EG667410	glucosamine-6-phosphate deaminase 1 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-13373501-4	chr1	13373412	13373612	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008678, intron 1 of 22)	CpG	571.0	NM_008678	17978.0	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-120113655-4	chr10	120113564	120113764	+	933.133301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080446)	promoter-TSS (NM_080446)	-699.0	NM_080446	117599.0	Mm.214703	NM_080446	ENSMUSG00000020228	Helb	AI447783|D10Ertd664e	helicase (DNA) B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-8613113-2	chr11	8613013	8613213	+	636.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 2 of 30)	intron (NM_001083587, intron 2 of 30)	51422.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-31059693-3	chr12	31059597	31059797	+	847.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14271.0	NM_027828	104943.0	Mm.248938	NM_027828	ENSMUSG00000036136	Fam110c	9030611O19Rik|AU019489	family with sequence similarity 110, member C	protein-coding	0.482297862185302	0.951942150454621	0.405709027103047	0.648139039083495	0.217648772759958	0.237224842561195	0.230860002876181	0.531999820306904	-2.47517582829191	0.191009699275479	1
Merged-chr19-6308267-2	chr19	6308167	6308367	+	674.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033342, intron 1 of 36)	intron (NM_001033342, intron 1 of 36)	1810.0	NM_001033342	240505.0	Mm.329622	NM_001033342	ENSMUSG00000024769	Cdc42bpg	BC046418|MRCKgamma	CDC42 binding protein kinase gamma (DMPK-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-29230673-4	chr5	29230591	29230791	+	669.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_020295, exon 17 of 17)	3' UTR (NM_020295, exon 17 of 17)	34698.0	NR_110371	56874.0	Mm.87352	NM_021470	ENSMUSG00000029130	Rnf32	1700009J01Rik|2700025B22Rik|4930542N22Rik|Lmbr2	ring finger protein 32	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-69908924-1	chr8	69908824	69909024	+	569.0	f1_c57bl6.idr	3' UTR (NM_145596, exon 13 of 13)	3' UTR (NM_145596, exon 13 of 13)	-6366.0	NM_023312	67184.0	Mm.21162	NM_023312	ENSMUSG00000036199	Ndufa13	2700054G14Rik|AU022060|CDA016|CGI-39|GRIM-19|Grim19	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 13	protein-coding	1.8781888574843	3.19363970532369	1.33809498085383	2.42861813730334	1.24276982300307	2.9561795538166	3.18263524674052	3.08319962810186	0.766196478822995	0.427501054959294	0.902392427013133
Merged-chr6-72092882-3	chr6	72092805	72093005	+	675.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4703.0	NM_001035228	20454.0	Mm.38248	NM_011375	ENSMUSG00000056091	St3gal5	3S-T|Siat9|[a]2	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-111597736-2	chr9	111597636	111597836	+	575.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016853, intron 6 of 10)	intron (NM_016853, intron 6 of 10)	92612.0	NM_016853	20840.0	Mm.1414	NM_016853	ENSMUSG00000032502	Stac	-	src homology three (SH3) and cysteine rich domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-74977148-3	chr14	74977053	74977253	+	856.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_046078, intron 2 of 2)	intron (NR_046078, intron 2 of 2)	2067.0	NR_046078	100043169.0	Mm.145900	NR_046078	ENSMUSG00000115019	Gm4278	-	predicted gene 4278	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-102925149-3	chr2	102925042	102925242	+	801.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23477.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	0.458160756913231	0.70925846419861	0.100859452591781	0.0965270985003475	0.651613875078255	0.10774387522208	0.102098219656139	0.260968268154741	-0.449013243274758	0.826851344028228	1
Merged-chr15-62162155-4	chr15	62162048	62162248	+	829.979187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_003368, intron 4 of 8)	intron (NR_003368, intron 4 of 8)	57303.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-135276960-1	chr6	135276860	135277060	+	1000.0	f0_balb.idr	Intergenic	Intergenic	-22624.0	NM_001080553	14840.0	Mm.272306	NM_010352	ENSMUSG00000030206	Gsg1	-	germ cell associated 1	protein-coding	0.405533398534841	0.446972584739262	0.433748110672317	0.423319110459346	1.40846121426893	1.66369432892452	0.436692527119219	1.22626332365933	4.86510747572228	0.0055814656734307	0.0725728159444756
Merged-chr19-3687833-4	chr19	3687769	3687969	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1305.0	NM_008513	16973.0	Mm.274581	NM_008513	ENSMUSG00000024913	Lrp5	BMND1|HBM|LR3|LRP7|OPPG|mKIAA4142	low density lipoprotein receptor-related protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-21218694-4	chr1	21218584	21218784	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_029398, exon 1 of 5)	5' UTR (NM_029398, exon 1 of 5)	109.0	NM_029398	75712.0	Mm.304763	NM_029398	ENSMUSG00000025933	Tmem14a	5730496E24Rik|C85783|PTD011	transmembrane protein 14A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-70481258-2	chr17	70481158	70481358	+	595.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347411, intron 4 of 14)	B2_Mm2|SINE|B2	-40636.0	NM_001347414	224997.0	Mm.311840	NM_027712	ENSMUSG00000003279	Dlgap1	4933422O14Rik|9630002F18|AI845682|AI848168|BB075781|D17Bwg0511e|GKAP/SAPAP|GKPA/SAPAP|Gkap|Sapap1|mKIAA4162	DLG associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117537085-4	chr8	117536978	117537178	+	824.275024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172285, intron 2 of 32)	B4A|SINE|B4	38803.0	NM_172285	234779.0	Mm.192699	NM_172285	ENSMUSG00000034330	Plcg2	PLC-gamma-2|PLCgamma2|Plcg-2	phospholipase C, gamma 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-180274470-2	chr2	180274370	180274570	+	765.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1005.0	NM_145851	252966.0	Mm.386884	NM_145851	ENSMUSG00000038990	Cables2	ik3-2	CDK5 and Abl enzyme substrate 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167981385-2	chr2	167981285	167981485	+	824.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080708, intron 20 of 21)	intron (NM_001080708, intron 20 of 21)	29208.0	NM_001080708	69553.0	Mm.68454	NM_001080708	ENSMUSG00000074577	Ripor3	2310033K02Rik|Fam65c|Gm124	RIPOR family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-90024390-3	chr7	90024300	90024500	+	918.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4759.0	NR_110365	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120905625-4	chr11	120905516	120905716	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027745, intron 3 of 18)	intron (NM_027745, intron 3 of 18)	27256.0	NM_027745	71276.0	Mm.275751	NM_027745	ENSMUSG00000048445	Ccdc57	4933434G05Rik	coiled-coil domain containing 57	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-101167215-2	chr4	101167115	101167315	+	704.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146145, intron 11 of 24)	intron (NM_146145, intron 11 of 24)	98067.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-104426226-2	chr11	104426126	104426326	+	544.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359634, intron 2 of 14)	intron (NM_001359634, intron 2 of 14)	16065.0	NM_001081045	76719.0	Mm.136418	NM_001081045	ENSMUSG00000018412	Kansl1	1700081L11Rik|9430041J06Rik|mKIAA1267	KAT8 regulatory NSL complex subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-87149943-4	chr17	87149845	87150045	+	766.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42266.0	NM_019654	56468.0	Mm.126885	NM_019654	ENSMUSG00000037104	Socs5	1810018L08Rik|Cish5|mKIAA0671	suppressor of cytokine signaling 5	protein-coding	1.76580316986168	3.93792042812282	2.30484953309524	2.23336296233652	2.70297658334296	2.83189997692733	1.711812212986	3.17507626431091	-0.292195511273055	0.733536123820039	0.998431161219273
Merged-chr3-135285316-2	chr3	135285216	135285416	+	605.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027208, intron 1 of 9)	intron (NM_027208, intron 1 of 9)	4095.0	NM_027208	69772.0	Mm.45121	NM_027208	ENSMUSG00000028167	Bdh2	1810026B04Rik|Dhrs6	3-hydroxybutyrate dehydrogenase, type 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-34931614-2	chr16	34931514	34931714	+	552.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_139300, intron 17 of 31)	intron (NM_139300, intron 17 of 31)	7715.0	NR_040536	76649.0	Mm.420532	NR_040536	ENSMUSG00000100593	1700119H24Rik	-	RIKEN cDNA 1700119H24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-125199448-4	chr8	125199363	125199563	+	934.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_174854, intron 9 of 12)	intron (NM_174854, intron 9 of 12)	145268.0	NM_174854	244667.0	Mm.233504	NM_170596	ENSMUSG00000043051	Disc1	-	disrupted in schizophrenia 1	protein-coding	2.32644153480996	2.62591914496539	1.40583480709889	2.03548503468069	2.64421561021848	2.51277351503354	3.6516933612735	2.58525868127201	1.54817465130765	0.0627045651076505	0.372317406216558
Merged-chr11-62847117-3	chr11	62847039	62847239	+	914.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291441)	promoter-TSS (NM_001291441)	16.0	NM_001291441	213980.0	Mm.482259	NM_001033669	ENSMUSG00000090173	Fbxw10	Fbw10|HREP|SM25H2|SM2SH2	F-box and WD-40 domain protein 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-79752619-2	chr15	79752538	79752738	+	796.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045069, exon 4 of 4)	non-coding (NR_045069, exon 4 of 4)	9940.0	NR_045069	100504191.0	Mm.421420	NR_045069	ENSMUSG00000087543	Gm16576	-	predicted gene 16576	ncRNA	-0.463792974921799	-0.602186254780073	-0.606121779139294	-0.609162675426911	-0.459698143633645	-0.601300044104547	0.198416202760725	-0.608631153007492	2.61004847724149	0.316169418323442	1
Merged-chr16-92944045-4	chr16	92943933	92944133	+	830.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-117959.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-21374833-1	chr12	21374733	21374933	+	748.0	f1_c57bl6.idr	Intergenic	Intergenic	-1201.0	NM_009615	11491.0	Mm.27681	NM_009615	ENSMUSG00000052593	Adam17	CD156b|Tace	a disintegrin and metallopeptidase domain 17	protein-coding	1.0520241117309	0.655558810592598	1.01452420179691	1.6837788268268	1.06218417798043	0.658151510114343	0.646530679879918	1.35387978712257	-0.817926213846909	0.592012405470456	0.97015200361199
Merged-chr8-67709102-1	chr8	67709002	67709202	+	579.0	f1_balb.idr	intron (NM_177698, intron 14 of 14)	intron (NM_177698, intron 14 of 14)	109193.0	NM_027626	234353.0	Mm.32525	NM_027626	ENSMUSG00000030465	Psd3	4931420C21Rik|AI661273|BC003498|D430018P08|EFA6D	pleckstrin and Sec7 domain containing 3	protein-coding	-0.989786300109673	-1.23260475256842	-1.24307021483566	-1.2516668571423	-1.25947646807559	-0.900997845241277	-1.24070106357476	-1.25012806227958	0.315345637906027	0.925948014407195	1
Merged-chr13-55212572-2	chr13	55212472	55212672	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008739, intron 1 of 22)	CpG	2790.0	NM_008739	18193.0	Mm.168965	NM_008739	ENSMUSG00000021488	Nsd1	AI528500|KMT3B	nuclear receptor-binding SET-domain protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64810091-4	chr5	64809974	64810174	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008453, intron 1 of 5)	intron (NM_008453, intron 1 of 5)	6551.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-14048669-4	chr10	14048575	14048775	+	990.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358783, intron 2 of 12)	intron (NM_001358783, intron 2 of 12)	82296.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-102677757-2	chr13	102677657	102677857	+	581.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15790.0	NM_001360519	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-71327903-2	chr10	71327803	71328003	+	615.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	16946.0	NM_134007	52637.0	Mm.254114	NM_134007	ENSMUSG00000037710	Cisd1	AU043990|AW743335|D10Ertd214e|Zcd1|mitoNEET	CDGSH iron sulfur domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-30620947-2	chr14	30620847	30621047	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011103, intron 1 of 17)	intron (NM_011103, intron 1 of 17)	5261.0	NM_011103	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-70792206-4	chr6	70792113	70792313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009075)	promoter-TSS (NM_009075)	-38.0	NM_009075	19895.0	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-4170530-2	chr8	4170409	4170609	+	631.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346730, intron 1 of 19)	B3A|SINE|B2	3942.0	NM_001346730	213027.0	Mm.437106	NM_153536	ENSMUSG00000011832	Evi5l	1700084G18Rik|2310039H16Rik|3110007G05Rik|B130050I23Rik	ecotropic viral integration site 5 like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-68302791-3	chr7	68302689	68302889	+	732.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013811, intron 2 of 8)	intron (NM_001013811, intron 2 of 8)	-26195.0	NR_040340	100504026.0	Mm.426764	NR_040340	ENSMUSG00000086628	Gm16157	-	predicted gene 16157	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-13820071-2	chr16	13819971	13820171	+	994.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346109, intron 1 of 7)	intron (NM_001346109, intron 1 of 7)	820.0	NM_001346111	18203.0	Mm.380410	NM_010946	ENSMUSG00000022681	Ntan1	PNAA|PNAD	N-terminal Asn amidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81364889-2	chr10	81364789	81364989	+	682.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001014836, exon 2 of 4)	exon (NM_001014836, exon 2 of 4)	931.0	NM_001014836	432479.0	Mm.440450	NM_001014836	ENSMUSG00000020234	4930404N11Rik	2210409H10Rik|5730551K18Rik|AI854616	RIKEN cDNA 4930404N11 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-54448381-4	chr12	54448266	54448466	+	640.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57048.0	NR_033689	665239.0	Mm.26856	NR_033689		Gm7550	EG665239|Gm666	predicted gene 7550	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-164458010-2	chr2	164457910	164458110	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2961.0	NM_025575	66460.0	Mm.44218	NM_025575	ENSMUSG00000045503	Sys1	2610042O14Rik|AI266964|C87389	SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171112733-2	chr1	171112633	171112833	+	593.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	-8928.0	NM_001081275	75472.0	Mm.32760	NM_029301	ENSMUSG00000026649	Cfap126	1700009P17Rik|AV282292|Flattop|Fltp	cilia and flagella associated protein 126	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-30767925-4	chr13	30767836	30768036	+	858.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_013674)	TTS (NM_013674)	18703.0	NM_013674	16364.0	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-21146755-4	chr2	21146662	21146862	+	857.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58603.0	NM_027728	71233.0	Mm.27658	NM_027728	ENSMUSG00000026679	Enkur	4933434I06Rik|AU016229	enkurin, TRPC channel interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-107811841-2	chr13	107811741	107811941	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 2 of 14)	intron (NM_145456, intron 2 of 14)	78223.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-59021053-4	chr17	59020945	59021145	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_145521, intron 2 of 2)	MTE2b|LTR|ERVL-MaLR	-7723.0	NM_026497	67993.0	Mm.36507	NM_026497	ENSMUSG00000024228	Nudt12	0610016O18Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-3343867-4	chr5	3343799	3343999	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009873)	promoter-TSS (NM_009873)	6.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-71831993-3	chr9	71831908	71832108	+	826.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60406.0	NM_001304362	68178.0	Mm.99961	NM_026599	ENSMUSG00000032232	Cgnl1	4933421H10Rik|9930020M10Rik|AI503810|Jacop	cingulin-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-25596318-2	chr8	25596218	25596418	+	549.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173012, intron 2 of 10)	intron (NM_173012, intron 2 of 10)	1169.0	NM_173012	270035.0	Mm.268349	NM_173012	ENSMUSG00000037363	Letm2	6030453H13|D030041N04Rik	leucine zipper-EF-hand containing transmembrane protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-83999501-4	chr12	83999407	83999607	+	978.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9995.0	NM_012006	26897.0	Mm.1978	NM_012006	ENSMUSG00000072949	Acot1	ACH2|CTE-1|CTE-I|Cte1|D12Ucla1	acyl-CoA thioesterase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-52303644-3	chr6	52303545	52303745	+	840.805542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-9853.0	NM_007966	14028.0	Mm.389754	NM_007966	ENSMUSG00000005503	Evx1	Evx-1	even-skipped homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120577946-2	chr11	120577846	120578046	+	923.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_133796, exon 6 of 6)	3' UTR (NM_133796, exon 6 of 6)	3674.0	NM_133796	192662.0	Mm.30016	NM_133796	ENSMUSG00000025132	Arhgdia	5330430M07Rik|Gdi-1|Rho-GDI|RhoDGI|RhoGDI-1	Rho GDP dissociation inhibitor (GDI) alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-74729647-3	chr5	74729535	74729735	+	779.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26732.0	NM_001159577	16924.0	Mm.440403	NM_010727	ENSMUSG00000029228	Lnx1	Lnx	ligand of numb-protein X 1	protein-coding	1.19143898120998	1.33048372424951	2.75556548098929	1.93264686177898	2.78698527726394	2.08626322140376	3.41024084566554	2.77598852025648	1.81006796081989	0.0573610702762325	0.354507960769697
Merged-chr19-12537415-4	chr19	12537308	12537508	+	898.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35412.0	NM_172442	207521.0	Mm.247695	NM_172442	ENSMUSG00000039982	Dtx4	AI449438|BC044798|D930042H13|RNF155	deltex 4, E3 ubiquitin ligase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-170436487-4	chr2	170436389	170436589	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8644.0	NM_029815	76960.0	Mm.240850	NM_029815	ENSMUSG00000013523	Bcas1	2210416M21Rik|9030223A09Rik|AI841227|NABC1	breast carcinoma amplified sequence 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28964502-2	chr17	28964402	28964602	+	782.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025888, intron 6 of 7)	intron (NM_025888, intron 6 of 7)	11286.0	NM_025888	66989.0	Mm.435	NM_025888	ENSMUSG00000005936	Kctd20	2410004N11Rik|AI451943|AW541186|D17Ertd562e	potassium channel tetramerisation domain containing 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-31077019-3	chr2	31076926	31077126	+	964.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355105, intron 6 of 15)	MTD|LTR|ERVL-MaLR	19474.0	NM_001177650	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-48869897-2	chr11	48869797	48869997	+	858.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008326, intron 1 of 2)	intron (NM_008326, intron 1 of 2)	1523.0	NM_001355757	15944.0	Mm.29938	NM_008326	ENSMUSG00000046879	Irgm1	Ifggd3|Ifi1|Iigp3|Iipg3|Irgm	immunity-related GTPase family M member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-178406436-4	chr1	178406300	178406500	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026626, intron 1 of 6)	CpG	382.0	NM_026626	68226.0	Mm.252132	NM_026626	ENSMUSG00000026495	Efcab2	1700073K01Rik|D830011E08Rik	EF-hand calcium binding domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-24360018-1	chr5	24359918	24360118	+	937.0	f1_c57bl6.idr	Intergenic	RLTR17B_Mm|LTR|ERVK	-4801.0	NM_008713	18127.0	Mm.258415	NM_008713	ENSMUSG00000028978	Nos3	2310065A03Rik|Nos-3|eNOS|ecNOS	nitric oxide synthase 3, endothelial cell	protein-coding	-0.953721354153451	-1.41025554057125	-1.42001056191158	-1.42802362688808	-1.44024889148474	-1.40814158675276	-1.41780223890411	-1.42658929208844	-2.11310844444413	0.543369238581748	1
Merged-chr11-75268744-4	chr11	75268627	75268827	+	974.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_177708)	TTS (NM_177708)	74734.0	NM_177708	237847.0	Mm.82661	NM_177708	ENSMUSG00000045287	Rtn4rl1	Ngr3|Ngrh2|Ngrl2	reticulon 4 receptor-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-14523236-3	chr8	14523152	14523352	+	728.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172910, intron 3 of 15)	L1_Mur2|LINE|L1	-365284.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-7857325-2	chr9	7857225	7857425	+	715.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_007464, intron 5 of 8)	intron (NM_007464, intron 5 of 8)	15845.0	NM_007464	11796.0	Mm.2026	NM_007464	ENSMUSG00000032000	Birc3	AW107670|Api1|Api2|Birc2|C-IAP2|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF49|cIAP-1|cIAP-2|cIAP1|cIAP2	baculoviral IAP repeat-containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122378496-2	chr5	122378395	122378595	+	755.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_024216, exon 3 of 8)	exon (NM_024216, exon 3 of 8)	5987.0	NM_024216	68080.0	Mm.266328	NM_024216	ENSMUSG00000029464	Gpn3	A930018B01Rik|Atpbd1c|D5Ertd708e	GPN-loop GTPase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-64660706-1	chr11	64660606	64660806	+	631.0	f1_c57bl6.idr	Intergenic	Intergenic	-224032.0	NR_028445	654805.0	Mm.436132	NR_028445		F930015N05Rik	-	RIKEN cDNA F930015N05 gene	ncRNA	2.75356802768305	3.49245911754628	3.37815566314596	3.28510028177724	2.53993952833345	3.12056784935273	3.69670569704583	3.58933983291428	0.0997442209668984	0.870368859243174	0.998431161219273
Merged-chr15-8627326-4	chr15	8627209	8627409	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	83498.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-37340149-4	chr3	37340065	37340265	+	824.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-8488.0	NM_008006	14173.0	Mm.473689	NM_008006	ENSMUSG00000037225	Fgf2	Fgf-2|Fgfb|bFGF	fibroblast growth factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-40099506-4	chr10	40099334	40099534	+	961.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 1 of 5)	L1MC1|LINE|L1	42820.0	NM_028247	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120596155-3	chr8	120596057	120596257	+	793.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7082.0	NM_178856	272551.0	Mm.275910	NM_178856	ENSMUSG00000031821	Gins2	2210013I18Rik|4833427B12Rik|AI323585|Pfs2	GINS complex subunit 2 (Psf2 homolog)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-28420882-3	chr4	28420791	28420991	+	786.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-392240.0	NM_001290434	13841.0	Mm.257266	NM_010141	ENSMUSG00000028289	Epha7	Cek11|Ebk|Ehk3|Hek11|Mdk1	Eph receptor A7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-65818749-4	chr3	65818652	65818852	+	681.224976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166659, intron 11 of 12)	intron (NM_001166659, intron 11 of 12)	139497.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	1.7292936806675	1.85047294147949	0.976299938512435	1.48664753550124	1.98804790957119	1.23717936704041	1.79773312385969	0.964762158609199	0.0609308354045214	0.961187331364869	0.998431161219273
Merged-chr4-6428287-2	chr4	6428187	6428387	+	821.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010945, intron 10 of 30)	intron (NM_010945, intron 10 of 30)	25984.0	NM_010945	18201.0	Mm.3059	NM_010945	ENSMUSG00000028245	Nsmaf	AA959567|C630007J05|Fan	neutral sphingomyelinase (N-SMase) activation associated factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78602261-1	chr15	78602161	78602361	+	587.0	f1_balb.idr	intron (NM_028195, intron 1 of 12)	intron (NM_028195, intron 1 of 12)	5214.0	NM_028195	72318.0	Mm.32911	NM_028195	ENSMUSG00000018008	Cyth4	2510004M07Rik|5830469K17Rik|AI467541|Pscd4|mFLJ00017	cytohesin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91964692-2	chr16	91964592	91964792	+	938.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33062.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-78350068-2	chr17	78349968	78350168	+	606.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_015800, intron 11 of 16)	intron (NM_015800, intron 11 of 16)	68084.0	NM_001285949	225020.0	Mm.236835	NM_199448	ENSMUSG00000056121	Fez2	9030616F16|D17Ertd315e	fasciculation and elongation protein zeta 2 (zygin II)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-23284768-2	chr15	23284668	23284868	+	698.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081299, intron 4 of 11)	Lx2B|LINE|L1	248305.0	NM_001081299	320865.0	Mm.241965	NM_001081299	ENSMUSG00000040420	Cdh18	B230220E17Rik|Cdh14l|Tg(GFAP-APOE_i4)1Hol	cadherin 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-95069912-2	chr8	95069812	95070012	+	650.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001042715, intron 8 of 17)	intron (NM_001042715, intron 8 of 17)	-11289.0	NM_028805	74187.0	Mm.28382	NM_028805	ENSMUSG00000031787	Katnb1	2410003J24Rik|KAT	katanin p80 (WD40-containing) subunit B 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-45378319-3	chr3	45378241	45378441	+	715.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001098172)	promoter-TSS (NM_001098172)	-57.0	NM_001098172	18526.0	Mm.242644	NM_011043	ENSMUSG00000049100	Pcdh10	6430521D13Rik|6430703F07Rik|OL-pc|mKIAA1400	protocadherin 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-95867748-3	chr10	95867648	95867848	+	640.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Charlie18a|DNA|hAT-Charlie	-72915.0	NM_001001932	216238.0	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-13007148-4	chr17	13007037	13007237	+	943.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013671)	promoter-TSS (NM_013671)	-702.0	NM_013671	20656.0	Mm.290876	NM_013671	ENSMUSG00000006818	Sod2	MnSOD|Sod-2	superoxide dismutase 2, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69419569-2	chr11	69419469	69419669	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5894.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-72548950-4	chr8	72548864	72549064	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027485)	promoter-TSS (NM_027485)	-654.0	NM_027485	70625.0	Mm.235885	NM_027485	ENSMUSG00000045248	Med26	5730493L18Rik|AI414941|AW495270|Crsp7	mediator complex subunit 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122263548-5	chr8	122263458	122263658	+	765.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18583.0	NM_009569	22761.0	Mm.3105	NM_009569	ENSMUSG00000049577	Zfpm1	FOG|Fog1	zinc finger protein, multitype 1	protein-coding	0.209351667548793	-0.138385788014111	-0.142930578583232	-0.146428983512171	0.399531509716723	0.347249126705834	-0.141929206982617	-0.145818320451495	1.6354493016556	0.492697231096651	1
Merged-chr4-3685393-4	chr4	3685268	3685468	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 1 of 12)	ORR1F|LTR|ERVL-MaLR	7247.0	NM_010747	17096.0	Mm.317331	NM_010747	ENSMUSG00000042228	Lyn	AA407514|Hck-2|p53Lyn|p56Lyn	LYN proto-oncogene, Src family tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-110659022-1	chr9	110658922	110659122	+	701.0	f1_balb.idr	intron (NM_028312, intron 1 of 6)	RMER4B|LTR|ERVK	2519.0	NM_028312	72654.0	Mm.249115	NM_028312	ENSMUSG00000019659	Ccdc12	2700094L05Rik|C76605	coiled-coil domain containing 12	protein-coding	0.6387665431459	0.396473492164145	0.95026543043557	0.384161914080623	0.645587722818453	0.591813660624932	0.569028895874717	1.01379107116169	0.603078831275739	0.716313955023142	1
Merged-chr16-33337365-4	chr16	33337303	33337503	+	966.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43333.0	NR_045709	100502742.0	Mm.217880	NR_045709	ENSMUSG00000097318	1700007L15Rik	linc-Iqcg|linc1609	RIKEN cDNA 1700007L15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-145280476-4	chr5	145280379	145280579	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2864.0	NM_001081431	666311.0	Mm.260773	NM_001081431	ENSMUSG00000070420	Zscan25	EG666311|Zfp498	zinc finger and SCAN domain containing 25	protein-coding	5.32451689207517	6.00266167659002	4.51362531328494	4.68398686269317	5.70147468260005	4.6980717474543	4.49141356401549	4.98510481912974	-0.229899972563868	0.567159652151088	0.962562732139494
Merged-chr11-79658387-4	chr11	79658288	79658488	+	944.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175543, intron 3 of 14)	MIRb|SINE|MIR	16698.0	NR_045898	72218.0	Mm.443271	NR_045898	ENSMUSG00000086569	Rab11fip4os2	1700020F10Rik|4930542H20Rik|Rab11fib4os2	RAB11 family interacting protein 4 (class II), opposite strand 2	ncRNA	3.398069624132	3.2683605355031	2.99278050403967	2.34559805325685	2.86838979406614	2.51609012350315	2.27102633637425	2.49546769048554	-0.953431625762915	0.178518087399445	0.649048488672285
Merged-chr2-103051349-3	chr2	103051260	103051460	+	834.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175094, intron 2 of 10)	intron (NM_175094, intron 2 of 10)	22153.0	NM_175094	27402.0	Mm.315011	NM_175094	ENSMUSG00000010914	Pdhx	AI481367|E3bp|Pdx1	pyruvate dehydrogenase complex, component X	protein-coding	2.64197238094729	2.56668261243361	3.5143569627866	3.22182669357801	3.08750693613067	2.58552632507598	2.6430182641246	3.08142256901453	-0.314123346676287	0.640381496533429	0.982599433509505
Merged-chr16-11457684-2	chr16	11457584	11457784	+	611.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028964, intron 13 of 20)	B1F1|SINE|Alu	52036.0	NM_001290148	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-90841157-3	chr13	90841087	90841287	+	819.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	64168.0	NM_001145879	435376.0	Mm.292579	NM_001145879	ENSMUSG00000078958	Atp6ap1l	EG435376	ATPase, H+ transporting, lysosomal accessory protein 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-153796218-3	chr1	153796119	153796319	+	923.355591	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001243223, intron 15 of 20)	MTA_Mm|LTR|ERVL-MaLR	46793.0	NM_011882	24014.0	Mm.259254	NM_011882	ENSMUSG00000066800	Rnasel	E230029I04Rik	ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-92714985-4	chr16	92714884	92715084	+	963.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111022, intron 2 of 6)	intron (NM_001111022, intron 2 of 6)	-17655.0	NM_009821	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-74373514-4	chr1	74373414	74373614	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MD1|LINE|L1	-1689.0	NM_013612	18173.0	Mm.2913	NM_013612	ENSMUSG00000026177	Slc11a1	Bcg|Ity|Ity1|Lsh|Nramp|Nramp1|ity	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30797767-2	chr2	30797667	30797867	+	950.833374	f1_balb.idr|f1_c57bl6.idr	intron (NR_028487, intron 4 of 6)	intron (NR_028487, intron 4 of 6)	3970.0	NM_198000	73598.0	Mm.34166	NM_198000	ENSMUSG00000044320	1700001O22Rik	1700113K14Rik|4930549G18Rik	RIKEN cDNA 1700001O22 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171234722-4	chr1	171234620	171234820	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010185)	promoter-TSS (NM_010185)	-371.0	NM_010185	14127.0	Mm.22673	NM_010185	ENSMUSG00000058715	Fcer1g	AI573376|CD23|FcR-gamma|FcR[g]|FcRgamma|Fce1g|FcepsilonRI|Ly-50	Fc receptor, IgE, high affinity I, gamma polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91928802-2	chr2	91928705	91928905	+	761.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001291483)	TTS (NM_001291483)	2897.0	NM_001291481	17242.0	Mm.906	NM_010784	ENSMUSG00000027239	Mdk	MK|Mek	midkine	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-3667492-2	chr7	3667392	3667592	+	586.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_181820, exon 11 of 15)	exon (NM_181820, exon 11 of 15)	-1652.0	NM_027203	69757.0	Mm.389782	NM_027203	ENSMUSG00000078813	Leng1	1500001K17Rik	leukocyte receptor cluster (LRC) member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-28836514-2	chr6	28836414	28836614	+	591.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019776, intron 16 of 23)	MIR3|SINE|MIR	-4767.0	NM_138682	192198.0	Mm.443660	NM_138682	ENSMUSG00000049939	Lrrc4	MBAG1|NGL-2|NGL2|NLG-2|Nag14	leucine rich repeat containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-25009817-4	chr8	25009710	25009910	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001270996, intron 1 of 21)	intron (NM_001270996, intron 1 of 21)	7112.0	NM_001270996	11502.0	Mm.28908	NM_007404	ENSMUSG00000031555	Adam9	AU020942|MDC9|Mltng|mKIAA0021	a disintegrin and metallopeptidase domain 9 (meltrin gamma)	protein-coding	4.94915539930631	5.07165269081656	5.24673124986179	5.15007535690356	4.92299579397131	5.14637550427697	5.62404764383538	5.35035096524948	0.205637579352724	0.497371333120973	0.936897994490085
Merged-chr11-52346469-3	chr11	52346360	52346560	+	861.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14402.0	NM_011694	22333.0	Mm.3555	NM_011694	ENSMUSG00000020402	Vdac1	AL033343|Vdac5|mVDAC1|mVDAC5	voltage-dependent anion channel 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101242715-3	chr15	101242590	101242790	+	632.111084	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17504.0	NR_045328	380977.0	Mm.399924	NR_045326	ENSMUSG00000097915	A330009N23Rik	-	RIKEN cDNA A330009N23 gene	ncRNA	-0.867856820516921	-0.857308838340916	-0.862499029434485	-0.461786512527084	-0.611070401011958	-0.854725148347818	-0.86191953312621	-0.706790256317682	-0.109173868119069	0.969961849815664	1
Merged-chr2-124623367-2	chr2	124623267	124623467	+	610.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291000, intron 1 of 18)	intron (NM_001291000, intron 1 of 18)	13071.0	NM_172537	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-38185500-4	chr18	38185358	38185558	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24304.0	NM_029357	75599.0	Mm.36560	NM_029357	ENSMUSG00000051375	Pcdh1	2010005A06Rik|AI585920	protocadherin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-131112458-2	chr3	131112358	131112558	+	686.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001276403)	promoter-TSS (NM_001276403)	-333.0	NM_001276403	16842.0	Mm.255219	NM_010703	ENSMUSG00000027985	Lef1	3000002B05|AI451430|Lef-1	lymphoid enhancer binding factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-11556440-2	chr8	11556340	11556540	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011919)	promoter-TSS (NM_011919)	-17.0	NM_011919	26356.0	Mm.25709	NM_011919	ENSMUSG00000045969	Ing1	2610028J21Rik|AA407184|AI875420|mING1h|p33Ing1|p37Ing1b	inhibitor of growth family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-26354427-3	chr11	26354332	26354532	+	606.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	BC1_Mm|scRNA|scRNA	-32652.0	NM_025923	67030.0	Mm.18875	NM_025923	ENSMUSG00000004018	Fancl	2010322C19Rik|AW554273|B230118H11Rik|Phf9|Pog|gcd	Fanconi anemia, complementation group L	protein-coding	1.44037928261975	0.960971345521421	2.43328598420184	1.15999029916293	0.886260772507884	1.46767740203493	2.52680492052254	1.68365665667965	0.367116060649115	0.767391648574806	0.998431161219273
Merged-chr6-90605751-2	chr6	90605651	90605851	+	565.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027868, intron 1 of 10)	MER44B|DNA|TcMar-Tigger	871.0	NM_027868	71699.0	Mm.272633	NM_027868	ENSMUSG00000030089	Slc41a3	1010001P06Rik|AI480742|SLC41A1-L2	solute carrier family 41, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81347393-2	chr10	81347293	81347493	+	658.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163165, intron 7 of 9)	intron (NM_001163165, intron 7 of 9)	3033.0	NM_001163165	15353.0	Mm.38474	NM_010440	ENSMUSG00000020232	Hmg20b	AW610687|BRAF35|Hmgx2|Hmgxb2|Smarce1r	high mobility group 20B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-14204436-4	chr2	14204321	14204521	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081310, intron 3 of 3)	intron (NM_001081310, intron 3 of 3)	-24993.0	NM_008625	17533.0	Mm.2019	NM_008625	ENSMUSG00000026712	Mrc1	AW259686|CD206|MR	mannose receptor, C type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-6144813-3	chr8	6144725	6144925	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1039538.0	NM_011388	20494.0	Mm.3500	NM_011388	ENSMUSG00000023073	Slc10a2	9130221J18Rik|AI605518|ASBT|IBAT|ISBT	solute carrier family 10, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-31932967-4	chr16	31932865	31933065	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172822)	promoter-TSS (NM_172822)	-886.0	NM_172822	239827.0	Mm.440388	NM_172822	ENSMUSG00000045625	Pigz	F630022B06Rik	phosphatidylinositol glycan anchor biosynthesis, class Z	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-135087935-3	chr6	135087871	135088071	+	768.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22309.0	NM_181444	232431.0	Mm.23575	NM_181444	ENSMUSG00000046733	Gprc5a	Rai3|Raig1	G protein-coupled receptor, family C, group 5, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-77373011-4	chr5	77372911	77373111	+	939.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008048, intron 1 of 4)	intron (NM_008048, intron 1 of 4)	35034.0	NM_001159518	29817.0	Mm.233470	NM_008048	ENSMUSG00000036256	Igfbp7	AGM|Fstl2|Mac25	insulin-like growth factor binding protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-146157619-3	chr3	146157513	146157713	+	883.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005846, intron 1 of 13)	MTE2b|LTR|ERVL-MaLR	7439.0	NM_001005846	68279.0	Mm.116862	NM_026656	ENSMUSG00000011008	Mcoln2	3300002C04Rik|AI549968|C86638|TRPML2	mucolipin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35156801-1	chr17	35156701	35156901	+	1000.0	f1_balb.idr	exon (NM_020027, exon 16 of 31)	exon (NM_020027, exon 16 of 31)	8076.0	NM_001199044	53761.0	Mm.272462	NM_020027	ENSMUSG00000024393	Prrc2a	3110039B05Rik|Bat-2|Bat2|D17H6S51E|G2|Wbp12|mKIAA4178	proline-rich coiled-coil 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-16165628-2	chr4	16165528	16165728	+	597.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045765, intron 1 of 6)	RLTR20A4|LTR|ERVK	1518.0	NR_045765	100415915.0	Mm.387180	NR_045765	ENSMUSG00000085112	A530072M11Rik	-	RIKEN cDNA gene A530072M11	ncRNA	-1.53362919331644	-1.50201671710775	-1.51157659084044	-1.08120497225282	-1.53141005593807	-1.49994505258991	-1.50941244497383	-1.51802371459528	-1.94474658522739	0.577200604274218	1
Merged-chr8-120572269-2	chr8	120572169	120572369	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145896, intron 9 of 15)	intron (NM_001145896, intron 9 of 15)	16806.0	NM_178856	272551.0	Mm.275910	NM_178856	ENSMUSG00000031821	Gins2	2210013I18Rik|4833427B12Rik|AI323585|Pfs2	GINS complex subunit 2 (Psf2 homolog)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140388034-6	chr5	140387912	140388112	+	858.555542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172277, intron 1 of 10)	intron (NM_172277, intron 1 of 10)	1296.0	NM_172277	231834.0	Mm.27098	NM_172277	ENSMUSG00000029560	Snx8	B130023O14Rik	sorting nexin 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-190929122-2	chr1	190929022	190929222	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357133, intron 1 of 8)	intron (NM_001357133, intron 1 of 8)	300.0	NM_001357133	52477.0	Mm.289914	NM_021421	ENSMUSG00000026634	Angel2	2610307I21Rik|5730410O10Rik|AI845692|D1Ertd396e|D1Ertd654e	angel homolog 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-103549657-4	chr15	103549546	103549746	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-11654.0	NM_021391	58200.0	Mm.143788	NM_021391	ENSMUSG00000022490	Ppp1r1a	0610038N18Rik|I-1	protein phosphatase 1, regulatory (inhibitor) subunit 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-111412159-3	chr10	111412056	111412256	+	841.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61071.0	NM_001358932	53605.0	Mm.290407	NM_015781	ENSMUSG00000058799	Nap1l1	AA407126|AI256722|D10Ertd68e|NAP-1	nucleosome assembly protein 1-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-7855578-2	chr9	7855478	7855678	+	845.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_007464, intron 5 of 8)	intron (NM_007464, intron 5 of 8)	17592.0	NM_007464	11796.0	Mm.2026	NM_007464	ENSMUSG00000032000	Birc3	AW107670|Api1|Api2|Birc2|C-IAP2|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF49|cIAP-1|cIAP-2|cIAP1|cIAP2	baculoviral IAP repeat-containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-169928149-4	chr2	169928043	169928243	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35044.0	NR_131974	446211.0	Mm.266854	NR_131974	ENSMUSG00000103935	AY702102	STDP1	cDNA sequence AY702102	ncRNA	2.60168448327299	3.9214521797658	3.36779908120251	3.91028417860804	2.94994060446376	3.81957926557759	1.66255521538241	3.28879633464971	-0.640477133274333	0.362300769334308	0.8580597646541
Merged-chr5-107978828-3	chr5	107978658	107978858	+	847.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026062, intron 1 of 4)	intron (NM_026062, intron 1 of 4)	8319.0	NM_026062	67266.0	Mm.277897	NM_026062	ENSMUSG00000029270	Fam69a	2900024C23Rik|AI315274	family with sequence similarity 69, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-149337356-2	chr3	149337256	149337456	+	894.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR31D_MM|LTR|ERVK	62619.0	NR_040591	381482.0	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-51597206-4	chr1	51597103	51597303	+	908.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_151621)	promoter-TSS (NR_151621)	-485.0	NR_151621	100045066.0	Mm.404734	NR_151621		Gm17767	-	predicted gene, 17767	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-73035341-6	chr17	73035207	73035407	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72678.0	NM_001177968	225010.0	Mm.329194	NM_001081071	ENSMUSG00000054469	Lclat1	AI181996|Agpat8|Alcat1|Gm91|Lycat	lysocardiolipin acyltransferase 1	protein-coding	3.44724415456817	3.45789572350279	3.25388653356668	3.3369259014212	3.53445778003406	3.17633052758166	3.45598163448498	3.26988820817022	-0.00936282643002013	0.98622820161518	0.998431161219273
Merged-chr1-54523900-4	chr1	54523811	54524011	+	992.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163314, intron 12 of 26)	intron (NM_001163314, intron 12 of 26)	33773.0	NM_001163314	241062.0	Mm.103539	NM_175508	ENSMUSG00000073678	Pgap1	5033403E17Rik|9030223K07Rik|A530084K22|D230012E17Rik|oto	post-GPI attachment to proteins 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-23374367-2	chr16	23374267	23374467	+	894.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	-54766.0	NM_001004151	239766.0	Mm.208751	NM_001004151	ENSMUSG00000033383	Rtp1	Gm1766|Gm604	receptor transporter protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-100203678-2	chr15	100203578	100203778	+	746.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172819, intron 27 of 32)	RLTR11C_MM|LTR|ERVK	-15642.0	NR_037311	100499528.0		NR_037311	ENSMUSG00000092752	Mir3473a	Mir3473|mir-3473a|mmu-mir-3473|mmu-mir-3473a	microRNA 3473a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-95747057-4	chr12	95746947	95747147	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201518, intron 1 of 1)	intron (NM_201518, intron 1 of 1)	54821.0	NM_201518	399558.0	Mm.341948	NM_201518	ENSMUSG00000047414	Flrt2	-	fibronectin leucine rich transmembrane protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-35653775-2	chr18	35653675	35653875	+	825.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001270646, exon 1 of 1)	exon (NM_001270646, exon 1 of 1)	1424.0	NM_001270646	381148.0	Mm.297784	NM_001270646	ENSMUSG00000073600	Prob1	Gm1614	proline rich basic protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-126086223-4	chr4	126086136	126086336	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172701, intron 7 of 9)	intron (NM_172701, intron 7 of 9)	-10417.0	NM_001163266	116748.0	Mm.41865	NM_138721	ENSMUSG00000050188	Lsm10	-	U7 snRNP-specific Sm-like protein LSM10	protein-coding	4.83854403466457	3.57358870111719	4.51762477599608	4.78732771694919	4.39143998430234	3.2386647049166	4.05542289495882	3.13719960326867	-0.92370670523333	0.0626748464533692	0.372277308381826
Merged-chr7-38108471-2	chr7	38108355	38108555	+	951.5	f0_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007633)	promoter-TSS (NM_007633)	-965.0	NM_007633	12447.0	Mm.16110	NM_007633	ENSMUSG00000002068	Ccne1	AW538188|CycE1	cyclin E1	protein-coding	2.90404780245187	2.73238118684182	1.71444648144032	2.83802539564928	2.54803459852599	1.50173461461034	2.66073973937085	2.8525320295737	-0.285039672926165	0.740497768018698	0.998431161219273
Merged-chr18-34930466-4	chr18	34930384	34930584	+	996.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144866, intron 2 of 10)	intron (NM_144866, intron 2 of 10)	1519.0	NM_144866	225363.0	Mm.329353	NM_144866	ENSMUSG00000024360	Etf1	AI463371|D6Ertd109e|ERF|ERF1|SUP45L1|TB3-1	eukaryotic translation termination factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-98704972-2	chr10	98704872	98705072	+	788.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-209670.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-39894596-1	chr11	39894496	39894696	+	544.0	f1_c57bl6.idr	Intergenic	RLTR26_Mus|LTR|ERVK	-504371.0	NR_126439	75315.0	Mm.461295	NR_126439		4930553C11Rik	-	RIKEN cDNA 4930553C11 gene	ncRNA	1.45661170616116	1.08742270556113	1.21933492765424	1.90013957416496	1.00866841745711	1.75841782318162	0.882044548858393	0.873041878759896	-1.10291785088564	0.422087107312387	0.900322118218157
Merged-chr9-44407425-8	chr9	44407221	44407421	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024266)	promoter-TSS (NM_024266)	227.0	NM_021789	60409.0	Mm.29814	NM_021789	ENSMUSG00000032112	Trappc4	1500017G03Rik|AI303617|HSPC172|PTD009|Sbd|Sbdn|Sdcbp2|TRS23	trafficking protein particle complex 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-22049876-3	chr13	22049802	22050002	+	810.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	6672.0	NM_178198	319183.0	Mm.371766	NM_178198	ENSMUSG00000069300	Hist1h2bj	-	histone cluster 1, H2bj	protein-coding	2.52431547633667	2.63499635741339	2.44267934909818	1.83148281575846	2.37313662927375	2.12996676549004	1.89138518503805	2.75014154909867	-0.137342118038112	0.870137916450445	0.998431161219273
Merged-chr11-105447907-3	chr11	105447821	105448021	+	633.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039242, intron 3 of 5)	intron (NM_001039242, intron 3 of 5)	8814.0	NM_172568	632687.0	Mm.121570	NM_172568	ENSMUSG00000078627	March10	4933417C16Rik|AV039223|Rnf190	membrane-associated ring finger (C3HC4) 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-106148455-3	chr8	106148349	106148549	+	981.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1905.0	NM_133792	192654.0	Mm.284770	NM_133792	ENSMUSG00000031903	Pla2g15	ACS|C87498|LLPL|Lpla2|Lypla3	phospholipase A2, group XV	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35267000-2	chr17	35266910	35267110	+	763.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001267808)	TTS (NM_001267808)	3887.0	NM_001267808	14980.0	Mm.439675	NM_001267808		H2-L	H-2L	histocompatibility 2, D region locus L	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-79854639-4	chr3	79854541	79854741	+	938.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11979.0	NM_027495	70652.0	Mm.46635	NM_027495	ENSMUSG00000027956	Tmem144	1110057I03Rik|5730537D05Rik	transmembrane protein 144	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-104178774-4	chr13	104178676	104178876	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361539)	promoter-TSS (NM_001361539)	-63.0	NM_001361538	81003.0	Mm.244190	NM_030731	ENSMUSG00000021712	Trim23	6330516O20Rik|AI450195|Arfd1	tripartite motif-containing 23	protein-coding	1.51095180474236	0.759551752563315	1.76567784869384	0.731714600887101	1.52628599102924	0.763011143793177	1.78273201413097	0.733875264080076	0.0413437283248513	0.978565708417899	0.998431161219273
Merged-chr17-83549602-2	chr17	83549502	83549702	+	767.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35269.0	NM_001159529	20463.0	Mm.30072	NM_009187	ENSMUSG00000024248	Cox7a2l	COX7AR|COX7RP|EB1|SIG-81|SIG81|Silg81	cytochrome c oxidase subunit VIIa polypeptide 2-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71286131-4	chr17	71286039	71286239	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357337, intron 2 of 7)	intron (NM_001357337, intron 2 of 7)	24872.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	2.10591297345188	4.09795615302378	1.38042090166003	3.5249052211886	3.05958593265915	2.73620551261101	1.39325824078213	2.77954838345404	-0.957438624921349	0.508119064169941	0.943374049681311
Merged-chr8-13677121-4	chr8	13677003	13677203	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 1 of 23)	CpG	484.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-52002431-2	chr12	52002331	52002531	+	789.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347404, intron 2 of 3)	intron (NM_001347404, intron 2 of 3)	4076.0	NM_029545	328092.0	Mm.2821	NM_029545	ENSMUSG00000020956	Dtd2	4930578F06Rik|6530401N04Rik|B830049N13Rik	D-tyrosyl-tRNA deacylase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-17798296-2	chr16	17798196	17798396	+	793.416687	f1_balb.idr|f1_c57bl6.idr	intron (NM_153790, intron 1 of 10)	CpG	1014.0	NM_153790	224024.0	Mm.194950	NM_153790	ENSMUSG00000012017	Scarf2	NSR1|SREC-II|SRECRP-1|Scatf1|Srec2|SrecII	scavenger receptor class F, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-5508614-3	chr1	5508521	5508721	+	924.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-79872.0	NM_001204371	18387.0	Mm.7977	NM_011011	ENSMUSG00000025905	Oprk1	K-OR-1|KOR|KOR-1|MSL-1|Oprk2|R21	opioid receptor, kappa 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-47068730-2	chr7	47068630	47068830	+	790.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14494.0	NR_106023	102465639.0		NR_106023	ENSMUSG00000098960	Mir7056	Gm27696|mmu-mir-7056	microRNA 7056	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-19747851-3	chr14	19747679	19747879	+	799.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3478.0	NM_008695	18074.0	Mm.20348	NM_008695	ENSMUSG00000021806	Nid2	AW547149|Ly111|NID-2|entactin-2|nidogen-2	nidogen 2	protein-coding	-1.7024385483431	-1.81249224917775	-1.82134771053534	-1.82862185015837	-1.70038292649591	-1.81057323376012	-1.81934302819017	-1.82731978264371	0.0376840119903864	0.991491645451152	1
Merged-chr17-43282345-2	chr17	43282245	43282445	+	658.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133776, intron 1 of 15)	intron (NM_133776, intron 1 of 15)	11998.0	NM_133776	77596.0	Mm.159950	NM_133776	ENSMUSG00000041293	Adgrf1	5031409J19Rik|Gpr110|KPG_009	adhesion G protein-coupled receptor F1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-106030626-4	chr12	106030527	106030727	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029843, intron 1 of 13)	intron (NM_001029843, intron 1 of 13)	20364.0	NM_001029843	22367.0	Mm.2981	NM_011705	ENSMUSG00000021115	Vrk1	51PK	vaccinia related kinase 1	protein-coding	2.99165397211272	3.13138328686448	3.17414436949654	2.3400969847664	2.64914918419122	1.46926061511067	1.42524687500553	2.69304891170617	-1.44126739876597	0.098505433665929	0.488292384839112
Merged-chr9-118683316-2	chr9	118683216	118683416	+	635.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 13 of 27)	intron (NM_133721, intron 13 of 27)	-28376.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-108049183-4	chr9	108049084	108049284	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357682)	promoter-TSS (NM_001357682)	-80.0	NM_177910	331026.0	Mm.22554	NM_177910	ENSMUSG00000070284	Gmppb	AI317178|E430010H19	GDP-mannose pyrophosphorylase B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-8847777-1	chr13	8847677	8847877	+	561.0	f1_balb.idr	intron (NM_001039388, intron 6 of 13)	intron (NM_001039388, intron 6 of 13)	23267.0	NM_001039389	207615.0	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-89190883-2	chr15	89190783	89190983	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_027081, exon 3 of 20)	exon (NM_027081, exon 3 of 20)	-5346.0	NR_105923	102465578.0		NR_105923	ENSMUSG00000098663	Mir6958	Gm27581|mmu-mir-6958	microRNA 6958	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-94236235-4	chr11	94236140	94236340	+	918.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_181819, exon 2 of 2)	3' UTR (NM_181819, exon 2 of 2)	6339.0	NM_181819	278507.0	Mm.342216	NM_181819	ENSMUSG00000044177	Wfikkn2	2610304F08Rik|AY100450|Gasp1|WFIKKNRP	WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 2	protein-coding	2.35878957852039	1.83569642929521	1.91400837827526	1.40637027035431	2.08287371653326	1.99359071040054	1.44476273467869	1.87116112989036	-0.172718916713977	0.863732738749874	0.998431161219273
Merged-chr6-54729948-4	chr6	54729846	54730046	+	962.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48322.0	NM_001289740	68235.0	Mm.233860	NM_026629	ENSMUSG00000038065	Mturn	2410066E13Rik|AI448550|B230212L03Rik	maturin, neural progenitor differentiation regulator homolog (Xenopus)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166941905-1	chr2	166941805	166942005	+	548.0	f1_c57bl6.idr	intron (NM_023565, intron 21 of 24)	intron (NM_023565, intron 21 of 24)	22812.0	NR_111895	20853.0	Mm.73276	NM_011490	ENSMUSG00000039536	Stau1	5830401L18Rik|AW549911|C85792|Stau	staufen double-stranded RNA binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-88551677-4	chr17	88551566	88551766	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028658, intron 7 of 21)	intron (NM_028658, intron 7 of 21)	21542.0	NM_028658	73825.0	Mm.271817	NM_028658	ENSMUSG00000034709	Ppp1r21	1110018J12Rik|AI426045|AW550781|Ccdc128|Klraq1	protein phosphatase 1, regulatory subunit 21	protein-coding	5.5819780773645	5.80268888114363	5.38919208982412	5.02465490438356	5.55827318679329	5.48879273692149	5.95375069692713	5.55686033776416	0.200103653748399	0.472094315267059	0.926125823511231
Merged-chr15-100131874-3	chr15	100131770	100131970	+	801.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159361, intron 2 of 37)	intron (NM_001159361, intron 2 of 37)	-22526.0	NM_172819	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-84792592-2	chr11	84792492	84792692	+	682.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26923.0	NM_145433	217038.0	Mm.280825	NM_145433	ENSMUSG00000018405	Mrm1	A530065E19Rik	mitochondrial rRNA methyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-132575935-2	chr2	132575835	132576035	+	921.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355651, intron 1 of 19)	intron (NM_001355651, intron 1 of 19)	2313.0	NM_001291050	74182.0	Mm.211211	NM_027096	ENSMUSG00000027346	Gpcpd1	2310004G06Rik|2310032D16Rik|AU015213|Gde5|Prei4|mKIAA1434	glycerophosphocholine phosphodiesterase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-70261867-3	chr9	70261758	70261958	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181072, intron 1 of 27)	intron (NM_181072, intron 1 of 27)	54508.0	NM_181072	71602.0	Mm.249311	NM_181072	ENSMUSG00000032220	Myo1e	2310020N23Rik|9130023P14Rik|AA407778|myosin-1e|myr 3	myosin IE	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-116476521-4	chr7	116476413	116476613	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27856.0	NM_001130479	53322.0	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-12758158-4	chr17	12758075	12758275	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010515, intron 1 of 47)	intron (NM_010515, intron 1 of 47)	11531.0	NM_010515	16004.0	Mm.26553	NM_010515	ENSMUSG00000023830	Igf2r	AI661837|CD222|CI-MPR|M6P/IGF2R|Mpr300	insulin-like growth factor 2 receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-107100946-4	chr3	107100880	107101080	+	839.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008417)	promoter-TSS (NM_008417)	-587.0	NM_008417	16490.0	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59731464-2	chr15	59731364	59731564	+	610.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	63495.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-25534389-2	chr2	25534289	25534489	+	834.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009422, intron 4 of 10)	intron (NM_009422, intron 4 of 10)	12551.0	NM_001290413	22030.0	Mm.3399	NM_009422	ENSMUSG00000026942	Traf2	AI325259	TNF receptor-associated factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-5143802-6	chr15	5143707	5143907	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355640)	promoter-TSS (NM_001355640)	-54.0	NM_001013367	105787.0	Mm.207004	NM_001013367	ENSMUSG00000050697	Prkaa1	AI194361|AI450832|AL024255|AMPKalpha1|C130083N04Rik	protein kinase, AMP-activated, alpha 1 catalytic subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128673984-4	chr10	128673874	128674074	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173733)	promoter-TSS (NM_173733)	-56.0	NM_173733	211389.0	Mm.23352	NM_173733	ENSMUSG00000049858	Suox	SO	sulfite oxidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-54832011-5	chr18	54831879	54832079	+	717.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	158201.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-57297706-4	chr2	57297594	57297794	+	907.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010274, intron 3 of 16)	intron (NM_010274, intron 3 of 16)	59312.0	NM_010274	14571.0	Mm.3711	NM_010274	ENSMUSG00000026827	Gpd2	AA408484|AI448216|AU021455|AW494132|GPDH|Gdm1|Gpd-m|Gpdh-m|TISP38	glycerol phosphate dehydrogenase 2, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-155061176-2	chr1	155061076	155061276	+	895.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22088.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30552398-4	chr7	30552279	30552479	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183321)	promoter-TSS (NM_183321)	-107.0	NM_183321	333193.0	Mm.34885	NM_183321	ENSMUSG00000036864	Proser3	-	proline and serine rich 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70695428-4	chr8	70695323	70695523	+	995.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2316.0	NM_010592	16478.0	Mm.419851	NM_010592	ENSMUSG00000071076	Jund	Jund1	jun D proto-oncogene	protein-coding	3.74676178763339	2.51264305817606	4.24686088633862	2.92942986516309	3.97002566779684	1.76104223724411	3.37127224033582	4.40264012969265	0.22074370986251	0.758294471913041	0.998431161219273
Merged-chr2-3050242-4	chr2	3050151	3050351	+	766.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A1|LTR|ERVL-MaLR	-63973.0	NM_001310434	269233.0	Mm.23044	NM_001081161	ENSMUSG00000050530	Fam171a1	9630050M13Rik|AA409679	family with sequence similarity 171, member A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-75680123-2	chr15	75680023	75680223	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1323.0	NM_028404	72960.0	Mm.182401	NM_028404	ENSMUSG00000000934	Top1mt	2900052H09Rik	DNA topoisomerase 1, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-148040104-2	chr2	148040004	148040204	+	560.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5360.0	NM_001291067	15376.0	Mm.938	NM_010446	ENSMUSG00000037025	Foxa2	HNF3-beta|HNF3beta|Hnf-3b|Hnf3b|Tcf-3b|Tcf3b	forkhead box A2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-118540429-4	chr2	118540316	118540516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001331221, intron 3 of 3)	intron (NM_001331221, intron 3 of 3)	4171.0	NR_138603	171543.0	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	-0.802593673557486	-0.793094718163527	-0.341243695287107	-0.798614554876962	-0.802002397560642	-0.791090896558683	-0.332078011335404	-0.79819523297655	0.040958530317021	0.989184000390448	1
Merged-chr12-99902223-3	chr12	99902105	99902305	+	624.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028354, intron 5 of 15)	(TTTTG)n|Simple_repeat|Simple_repeat	17690.0	NM_028354	104884.0	Mm.312323	NM_028354	ENSMUSG00000021177	Tdp1	2810481F14Rik|4921509N21Rik|AI838772|AW493413|E430034L06Rik|MLZ-501|SCAN1	tyrosyl-DNA phosphodiesterase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-13298999-4	chr9	13298906	13299106	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52050.0	NM_025534	66396.0	Mm.290620	NM_025534	ENSMUSG00000079084	Ccdc82	2310043N13Rik	coiled-coil domain containing 82	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-36207720-2	chr12	36207620	36207820	+	573.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_027699)	TTS (NM_027699)	10498.0	NM_027699	71156.0	Mm.250837	NM_027699	ENSMUSG00000020545	Lrrc72	1700108M19Rik|4933421E18Rik	leucine rich repeat containing 72	protein-coding	-0.0211443283984232	-0.641664752310627	-0.645034587532555	-0.647629074951804	-0.274124372481926	-0.640904061703657	-0.644292024290792	-0.647176169770092	-0.932984113643968	0.749082239155901	1
Merged-chr17-5595612-2	chr17	5595512	5595712	+	618.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	B4A|SINE|B4	103012.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165317571-4	chr2	165317469	165317669	+	934.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080287, intron 1 of 20)	intron (NM_080287, intron 1 of 20)	-1218.0	NM_001302754	140579.0	Mm.35064	NM_080287	ENSMUSG00000017670	Elmo2	1190002F24Rik|CED-12	engulfment and cell motility 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-31082784-4	chr19	31082665	31082865	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031249)	promoter-TSS (NM_031249)	-76.0	NM_031249	83410.0	Mm.22031	NM_031249	ENSMUSG00000053536	Cstf2t	64kDa|C77975|tCstF-64|tauCstF-64	cleavage stimulation factor, 3' pre-RNA subunit 2, tau	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-73532907-2	chr5	73532807	73533007	+	866.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_153313, intron 6 of 9)	intron (NR_153313, intron 6 of 9)	41881.0	NM_178896	100737.0	Mm.220312	NM_178896	ENSMUSG00000051674	Dcun1d4	AI836376	DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-84653556-3	chr2	84653458	84653658	+	801.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355064, intron 1 of 18)	B2_Mm2|SINE|B2	-2818.0	NM_001355066	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-62513766-2	chr4	62513666	62513866	+	568.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001276446, intron 2 of 11)	intron (NM_001276446, intron 2 of 11)	6143.0	NM_001276446	17025.0	Mm.6988	NM_008525	ENSMUSG00000028393	Alad	ALADH|Lv	aminolevulinate, delta-, dehydratase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-107921514-3	chr4	107921382	107921582	+	888.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009949, intron 1 of 4)	intron (NM_009949, intron 1 of 4)	2107.0	NM_009949	12896.0	Mm.307620	NM_009949	ENSMUSG00000028607	Cpt2	AI323697|CPTII	carnitine palmitoyltransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98961160-4	chr11	98961088	98961288	+	938.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001176528, intron 1 of 7)	intron (NM_001176528, intron 1 of 7)	717.0	NM_001176528	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-126980531-2	chr10	126980431	126980631	+	663.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113470, intron 1 of 7)	intron (NM_001113470, intron 1 of 7)	1814.0	NM_001113470	52468.0	Mm.29490	NM_146012	ENSMUSG00000078429	Ctdsp2	AI586070|D10Ertd73e|OS-4|OS4|SCP2	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32606415-2	chr2	32606315	32606515	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_110347)	promoter-TSS (NR_110347)	-570.0	NM_001289547	50935.0	Mm.88831	NM_016973	ENSMUSG00000026811	St6galnac6	ST6GalNAcVI|Siat7f	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-55650390-4	chr4	55650348	55650548	+	719.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-117973.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-32569405-2	chr4	32569304	32569504	+	988.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_026843, intron 1 of 4)	intron (NR_026843, intron 1 of 4)	2258.0	NR_026843	414068.0	Mm.389550	NR_026843	ENSMUSG00000086150	Bach2os	-	BTB and CNC homology 2, opposite strand	ncRNA	-0.188662499334168	0.464920794421284	-0.177715543129441	-0.181822550804699	-0.0337478895249337	-0.171211780777664	0.531058451982163	-0.181104365792326	0.422061120937733	0.857367739337099	1
Merged-chr17-30005740-4	chr17	30005614	30005814	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151443, intron 1 of 4)	intron (NR_151443, intron 1 of 4)	675.0	NM_001356265	21769.0	Mm.220972	NM_148926	ENSMUSG00000044477	Zfand3	AW539211|TEG-27|Tex27	zinc finger, AN1-type domain 3	protein-coding	2.21300435347561	3.95812857121782	4.26266268484774	4.00897907921325	3.20214481662997	2.09400602459324	4.03977448478919	3.60749784667785	-0.572458059639164	0.392451441935692	0.881258234308592
Merged-chr14-19823928-4	chr14	19823842	19824042	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026528)	promoter-TSS (NM_026528)	-119.0	NM_026528	68045.0	Mm.21932	NM_026528	ENSMUSG00000021807	Rtraf	2700060E02Rik	RNA transcription, translation and transport factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-38804321-2	chr6	38804221	38804421	+	598.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010433, intron 2 of 14)	MTD|LTR|ERVL-MaLR	32990.0	NM_001136065	15258.0	Mm.23790	NM_010433	ENSMUSG00000061436	Hipk2	1110014O20Rik|B230339E18Rik|Stank	homeodomain interacting protein kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5490031-2	chr19	5489931	5490131	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007687)	promoter-TSS (NM_007687)	-424.0	NM_007687	12631.0	Mm.329655	NM_007687	ENSMUSG00000056201	Cfl1	AA959946|Cof	cofilin 1, non-muscle	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-77286799-3	chr5	77286703	77286903	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14046.0	NR_039557	100628577.0		NR_039557	ENSMUSG00000093061	Mir5098	mmu-mir-5098|mu-mir-5098	microRNA 5098	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-45049898-2	chr10	45049798	45049998	+	675.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17316.0	NM_011156	19072.0	Mm.10281	NM_011156	ENSMUSG00000019849	Prep	AI047692|AI450383|D10Wsu136e|PEP|Pop	prolyl endopeptidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-39635711-1	chr8	39635611	39635811	+	627.0	f1_balb.idr	intron (NM_001113326, intron 1 of 9)	(CCCCCT)n|Simple_repeat|Simple_repeat	6967.0	NM_031195	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	1.76642169194957	1.83257278076707	1.61111021853057	1.85956869962132	1.78067050037074	1.22043791658968	2.44224179451394	2.365416646796	0.786545723542654	0.443240488825838	0.911848228504708
Merged-chr14-33447294-4	chr14	33447186	33447386	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016700)	promoter-TSS (NM_016700)	-128.0	NM_016700	26419.0	Mm.21495	NM_016700	ENSMUSG00000021936	Mapk8	AI849689|JNK|JNK1|Prkm8|SAPK1	mitogen-activated protein kinase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-164764444-2	chr2	164764345	164764545	+	624.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133763, intron 10 of 12)	L1Md_F2|LINE|L1	-5484.0	NM_026785	68612.0	Mm.89830	NM_026785	ENSMUSG00000001403	Ube2c	1110015A16Rik|D2Ertd695e	ubiquitin-conjugating enzyme E2C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-138028126-1	chr4	138028026	138028226	+	560.0	f0_balb.idr	intron (NM_001355699, intron 1 of 32)	intron (NM_001355699, intron 1 of 32)	30301.0	NM_001355700	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	0.801575085054988	0.885595251382764	1.68482952781376	0.838383867924115	2.21178174892277	0.891335280104459	2.63758721507367	1.99679653280096	2.92092174495807	0.0310873515704466	0.243388011809531
Merged-chr8-125053640-4	chr8	125053553	125053753	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_174853)	promoter-TSS (NM_174853)	-542.0	NM_174853	244667.0	Mm.233504	NM_170596	ENSMUSG00000043051	Disc1	-	disrupted in schizophrenia 1	protein-coding	2.83114718121737	2.4039442677486	3.34443815106498	3.05667568451261	2.69529097372919	2.42190450826998	1.49902509994947	2.40477151217292	-1.23164274522436	0.119092751169753	0.541133408551742
Merged-chr11-100525132-4	chr11	100525009	100525209	+	798.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134037, intron 1 of 27)	intron (NM_134037, intron 1 of 27)	2891.0	NM_134037	104112.0	Mm.282039	NM_134037	ENSMUSG00000020917	Acly	A730098H14Rik|AW538652	ATP citrate lyase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-33431562-3	chr18	33431469	33431669	+	860.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	32065.0	NM_001267717	27528.0	Mm.407415	NM_053078	ENSMUSG00000042834	Nrep	AI325076|D0H4S114|Harp|P311|PTZ17|SEZ17	neuronal regeneration related protein	protein-coding	1.56119571855615	2.24823166681681	1.21542501469436	1.18852904103436	2.31380643747272	2.79504540176111	2.69800714455816	2.34049520633014	2.33363455824835	0.0195959242891371	0.17739831460342
Merged-chr11-104329870-2	chr11	104329770	104329970	+	760.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010838, exon 10 of 10)	3' UTR (NM_010838, exon 10 of 10)	98434.0	NM_001285454	17762.0	Mm.1287	NM_010838	ENSMUSG00000018411	Mapt	AI413597|AW045860|Mtapt|Tau	microtubule-associated protein tau	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-135439354-4	chr3	135439254	135439454	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_030689)	promoter-TSS (NR_030689)	228.0	NM_001356597	66105.0	Mm.49884	NM_025356	ENSMUSG00000078578	Ube2d3	1100001F19Rik|9430029A22Rik|AA414951	ubiquitin-conjugating enzyme E2D 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41344448-2	chr19	41344348	41344548	+	763.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 2 of 16)	intron (NM_031376, intron 2 of 16)	40622.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-104511226-2	chr3	104511173	104511373	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025067, intron 1 of 17)	intron (NM_001025067, intron 1 of 17)	645.0	NM_001025067	269473.0	Mm.34855	NM_001025067	ENSMUSG00000032913	Lrig2	4632419I10Rik|BB096938|LIG-2	leucine-rich repeats and immunoglobulin-like domains 2	protein-coding	-1.18832717429738	-1.16380929885254	-0.856565824811958	-1.18328408639367	-1.18787580914644	-1.16149229066421	-0.849604865165746	-1.18171197755832	0.0406512889656815	0.990321405100139	1
Merged-chr3-152152158-2	chr3	152152058	152152258	+	859.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016867, intron 1 of 5)	intron (NM_016867, intron 1 of 5)	13742.0	NM_016867	54120.0	Mm.97	NM_016867	ENSMUSG00000039131	Gipc2	2200002N01Rik|AU021850|Semcap2	GIPC PDZ domain containing family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141728617-1	chr4	141728517	141728717	+	626.0	f1_balb.idr	Intergenic	B3|SINE|B2	-5198.0	NM_001017966	68817.0	Mm.393721	NM_001017966	ENSMUSG00000078515	Ddi2	1110056G13Rik|1700027M01Rik|9130022E05Rik|AI604911|AU040698	DNA-damage inducible protein 2	protein-coding	1.91362205204666	2.25545423772948	2.18266621119565	1.8750265787423	2.13810006802609	2.27149575444425	2.19896470368593	1.88352796119216	0.174750916812538	0.842978060354349	0.998431161219273
Merged-chr15-98092816-2	chr15	98092716	98092916	+	753.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163488, intron 1 of 22)	CpG	227.0	NM_001163488	18642.0	Mm.272582	NM_021514	ENSMUSG00000033065	Pfkm	AI131669|ATP-PFK|PFK-A|PFK-M|Pfk-4|Pfk4|Pfka|Pfkx	phosphofructokinase, muscle	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-124073254-4	chr1	124073183	124073383	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27724.0	NM_199021	269109.0	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	4.50374491581626	3.38728235845403	4.45841862045946	4.71712538718934	3.90291544167073	4.22788078800051	4.53831192135742	3.96969028125982	-0.241660614931939	0.587053183656687	0.967957151188163
Merged-chr5-122707586-4	chr5	122707507	122707707	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011026)	promoter-TSS (NM_011026)	63.0	NM_001310718	18438.0	Mm.290884	NM_011026	ENSMUSG00000029470	P2rx4	AI504491|AW555605|D5Ertd444e|P2X4	purinergic receptor P2X, ligand-gated ion channel 4	protein-coding	5.32771789711683	4.84746450281565	5.93109074153739	6.00836291729077	6.01535222688305	5.97518186291578	5.34138105023563	5.77804311364241	0.218595605620183	0.469042597244524	0.924757197727779
Merged-chr2-156715729-2	chr2	156715629	156715829	+	588.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_040505, intron 3 of 3)	intron (NR_040505, intron 3 of 3)	5180.0	NR_040505	74846.0	Mm.443946	NR_040505	ENSMUSG00000086638	4930405A21Rik	-	RIKEN cDNA 4930405A21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-125527477-3	chr1	125527374	125527574	+	931.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33121.0	NM_001356294	74150.0	Mm.28654	NM_028787	ENSMUSG00000026342	Slc35f5	1300003P13Rik|AI646727	solute carrier family 35, member F5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64716757-4	chr5	64716634	64716834	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-86789.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	4.24966909535257	3.19594309187287	4.03188894387987	3.29889194519912	2.85228101724752	2.79192522737225	4.00457117849567	3.70402852865066	-0.496455401575783	0.395136221447889	0.882909751294042
Merged-chr11-115930375-1	chr11	115930275	115930475	+	554.0	f1_balb.idr	intron (NM_130454, intron 2 of 18)	AT_rich|Low_complexity|Low_complexity	3117.0	NM_130454	170472.0	Mm.379351	NM_130454	ENSMUSG00000020752	Recql5	RecQ5|Recq5b|Recql5b	RecQ protein-like 5	protein-coding	-0.704347454874818	-1.05455977589609	-1.06579631309813	-1.07151958844463	-1.07425770968218	-0.707535259853554	-1.06325260737347	-1.07118043667044	-0.117338903016028	0.971356004086452	1
Merged-chr17-34654133-2	chr17	34654033	34654233	+	940.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_017406, intron 17 of 17)	intron (NM_017406, intron 17 of 17)	6987.0	NM_017406	12915.0	Mm.4068	NM_017406	ENSMUSG00000015461	Atf6b	AA617266|ATF6beta|Creb-rp|Crebl1	activating transcription factor 6 beta	protein-coding	0.904646713492005	1.04689702550171	0.531779729510245	1.17537879452411	0.913860496627794	1.05702560061452	0.533676238156928	0.526291409679416	-0.818116856600373	0.616188048696082	1
Merged-chr2-129572766-4	chr2	129572666	129572866	+	984.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20073.0	NM_001291020	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	2.57887829559809	1.33891178007605	2.05090189997004	2.11700784331634	2.39170233673643	2.13571635540307	1.75479268260245	2.23762417796715	0.108838961639594	0.909370187779469	0.998431161219273
Merged-chr6-83029936-3	chr6	83029852	83030052	+	788.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001291799)	TTS (NM_001291799)	3519.0	NM_010070	13448.0	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	1.23440655815103	1.10398032357292	1.07906173670224	2.29656992718404	1.92540999120059	2.28829510515327	1.70713620759296	2.30937293925656	1.41861838747739	0.215862487556903	0.706180188649098
Merged-chr1-88265039-3	chr1	88264908	88265108	+	968.2666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040291, exon 5 of 5)	non-coding (NR_040291, exon 5 of 5)	4400.0	NR_040291	78605.0	Mm.384762	NR_040291		6430706D22Rik	-	RIKEN cDNA 6430706D22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-134761912-4	chr4	134761830	134762030	+	876.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145554, intron 1 of 8)	intron (NM_145554, intron 1 of 8)	6074.0	NM_145554	100017.0	Mm.27486	NM_145554	ENSMUSG00000037295	Ldlrap1	AA691260|ARH2|Arh|Arh1|FHCB1|FHCB2	low density lipoprotein receptor adaptor protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-108599446-2	chr13	108599346	108599546	+	577.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-54731.0	NM_011056	238871.0	Mm.434429	NM_011056	ENSMUSG00000021699	Pde4d	9630011N22Rik|Dpde3	phosphodiesterase 4D, cAMP specific	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-4588589-2	chr8	4588489	4588689	+	872.583374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24581.0	NM_145591	233987.0	Mm.102799	NM_145591	ENSMUSG00000058748	Zfp958	-	zinc finger protein 958	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-120125008-4	chr7	120124914	120125114	+	842.1083369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20277.0	NM_011775	22787.0	Mm.6510	NM_011775	ENSMUSG00000030911	Zp2	Zp-2	zona pellucida glycoprotein 2	protein-coding	2.84921020793855	2.86647259142939	3.55814258897724	3.32888724143541	2.67735057485151	3.63406790412293	3.01767164652077	1.85216322768355	-0.411718576279552	0.558408262120263	0.960321604678676
Merged-chr16-26349011-1	chr16	26348911	26349111	+	631.0	f0_balb.idr	Intergenic	Intergenic	22828.0	NM_016674	12737.0	Mm.289441	NM_016674	ENSMUSG00000022512	Cldn1	AI596271	claudin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-54992057-4	chr18	54991991	54992191	+	993.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360787, intron 1 of 8)	intron (NM_001360787, intron 1 of 8)	500.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-153790852-1	chr1	153790752	153790952	+	625.333313	f0_balb.idr	intron (NM_001243223, intron 17 of 20)	intron (NM_001243223, intron 17 of 20)	41426.0	NM_011882	24014.0	Mm.259254	NM_011882	ENSMUSG00000066800	Rnasel	E230029I04Rik	ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-81523459-4	chr7	81523362	81523562	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045299)	promoter-TSS (NR_045299)	-88.0	NR_045299	100504421.0	Mm.217071	NR_045299	ENSMUSG00000097277	2900076A07Rik	WI1-1616M8.2	RIKEN cDNA 2900076A07 gene	ncRNA	6.2492965159093	6.06775468088829	6.18078667466835	6.31983940143896	5.88741226976011	5.80779145267307	5.91697023726784	5.49605858056324	-0.466590904888918	0.0403838708910848	0.286493264140378
Merged-chr9-96119295-4	chr9	96119210	96119410	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177352)	promoter-TSS (NM_177352)	-119.0	NM_177352	235533.0	Mm.213651	NM_177352	ENSMUSG00000041440	Gk5	AV095337|C330018K18Rik|G630067D24Rik	glycerol kinase 5 (putative)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-64734879-3	chr9	64734827	64735027	+	821.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017382, intron 1 of 4)	intron (NM_017382, intron 1 of 4)	2829.0	NM_017382	53869.0	Mm.1387	NM_017382	ENSMUSG00000004771	Rab11a	-	RAB11A, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-3803791-2	chr5	3803691	3803891	+	612.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289528)	promoter-TSS (NM_001289528)	610.0	NR_033173	79264.0	Mm.32368	NM_030675	ENSMUSG00000000600	Krit1	2010007K12Rik|A630036P20Rik|AA432855|AI450393|AI643869|BB155247|BB235701|Ccm1	KRIT1, ankyrin repeat containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-4811408-3	chr6	4811312	4811512	+	780.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	64106.0	NM_130877	170676.0	Mm.320575	NM_130877	ENSMUSG00000092035	Peg10	AA407948|Edr|HB-1|MEF3L|Mar2|Mart2|MyEF-3|Rtl2	paternally expressed 10	protein-coding	0.569627095431937	0.623740967237945	1.35980911252194	2.14943886568355	0.782716046456857	1.57203249218788	0.610437920249773	0.827745084371903	-1.18804486249093	0.431252438255219	0.904679012727573
Merged-chr8-37898244-3	chr8	37898144	37898344	+	874.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145841, intron 2 of 7)	intron (NM_145841, intron 2 of 7)	353958.0	NR_029884	723860.0		NR_029884	ENSMUSG00000065457	Mir383	Mirn383|mir-383|mmu-mir-383	microRNA 383	ncRNA	0.4618229588801	0.50737442504901	1.55475117680971	1.58095401010284	0.464786655413446	0.510589394494221	1.57201245825666	0.483441304519533	-0.984306457317676	0.756675110998166	0.998431161219273
Merged-chr14-75164051-4	chr14	75163971	75164171	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008879, intron 1 of 16)	intron (NM_008879, intron 1 of 16)	27646.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-85494967-1	chr17	85494867	85495067	+	658.0	f0_balb.idr	Intergenic	Intergenic	123429.0	NR_038084	100043902.0	Mm.150838	NR_015385	ENSMUSG00000093460	Six3os1	D17Mgi26|E130112H22Rik|Rncr1|Six3os	SIX homeobox 3, opposite strand 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-90250487-3	chr11	90250396	90250596	+	919.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026178, intron 1 of 6)	intron (NM_026178, intron 1 of 6)	1020.0	NM_026178	67468.0	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-64101239-2	chr15	64101139	64101339	+	796.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 25 of 28)	intron (NM_001276461, intron 25 of 28)	-40791.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0.476962741872199	0.512946152718218	0.888268810442116	1.32965356688781	0.479269296832286	0.515527691057543	1.04831395686398	1.58993563985371	0.615693769257633	0.719038960383301	0.998431161219273
Merged-chr2-91097260-3	chr2	91097181	91097381	+	819.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011355, intron 1 of 4)	intron (NM_011355, intron 1 of 4)	603.0	NM_011355	20375.0	Mm.1302	NM_011355	ENSMUSG00000002111	Spi1	Dis-1|Dis1|PU.1|Sfpi-1|Sfpi1|Spi-1|Tcfpu1|Tfpu.1	spleen focus forming virus (SFFV) proviral integration oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-3414435-2	chr2	3414335	3414535	+	928.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355205, intron 1 of 3)	B3A|SINE|B2	4162.0	NM_001355210	104362.0	Mm.2688	NM_008579	ENSMUSG00000026650	Meig1	MLZ-278|Meg1	meiosis expressed gene 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-29522990-4	chr6	29522883	29523083	+	984.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3642.0	NM_001311083	27056.0	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-54381312-2	chr14	54381262	54381462	+	919.7999880000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_011405, intron 4 of 11)	intron (NM_011405, intron 4 of 11)	20521.0	NM_026936	69089.0	Mm.182340	NM_026936	ENSMUSG00000000959	Oxa1l	1810020M02Rik|AI894287	oxidase assembly 1-like	protein-coding	1.86099891578221	1.00163992072429	0.981477861900299	1.87598934865736	1.5752866476767	2.13279948099255	0.985976242480411	1.98361220738447	0.687487256414822	0.592387285097492	0.97025791498904
Merged-chr2-152693418-3	chr2	152693304	152693504	+	926.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010376, intron 8 of 11)	intron (NM_010376, intron 8 of 11)	6256.0	NM_025543	66405.0	Mm.440291	NM_025543	ENSMUSG00000042814	Mcts2	2400002F11Rik|MCT-2	malignant T cell amplified sequence 2	protein-coding	0.351980304755552	1.69294180358131	0.380118460073244	0.58942509183258	0.719365885331289	0.396207626047595	1.45318197054911	0.371556412905759	-0.318835697265313	0.85440804759372	0.998431161219273
Merged-chr19-6340738-3	chr19	6340642	6340842	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291787)	promoter-TSS (NM_001291787)	-418.0	NM_009006	26412.0	Mm.25860	NM_009006	ENSMUSG00000024948	Map4k2	AI385662|BL44|GCK|Rab8ip	mitogen-activated protein kinase kinase kinase kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-100084142-4	chr15	100084031	100084231	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_037311, intron 3 of 3)	intron (NR_037311, intron 3 of 3)	45467.0	NM_001159361	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-158129057-2	chr2	158128957	158129157	+	555.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009373, intron 7 of 12)	intron (NM_009373, intron 7 of 12)	17335.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-65490043-3	chr18	65489968	65490168	+	903.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_105742, intron 3 of 6)	intron (NR_105742, intron 3 of 6)	59071.0	NM_172833	240354.0	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	1.69688150903414	1.50559574041287	1.6669604392589	1.18793541920384	2.63328482806401	2.08228095023453	2.26437300862877	2.82886755325677	2.6366700389209	0.00818149104580707	0.0942652332595325
Merged-chr16-17132932-2	chr16	17132832	17133032	+	883.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022324)	promoter-TSS (NM_022324)	-549.0	NM_022324	64136.0	Mm.30222	NM_022324	ENSMUSG00000022769	Sdf2l1	-	stromal cell-derived factor 2-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-54693917-3	chr11	54693811	54694011	+	967.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252496, intron 28 of 28)	intron (NM_001252496, intron 28 of 28)	93792.0	NM_178626	72729.0	Mm.29476	NM_178626	ENSMUSG00000052298	Cdc42se2	2810404F18Rik|AA408783|AA536669|SPEC2	CDC42 small effector 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-49178336-3	chr7	49178253	49178453	+	947.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111016, intron 2 of 38)	intron (NM_001111016, intron 2 of 38)	-16195.0	NR_154465	108167511.0	Mm.400599	NR_154465		9130015G15Rik	-	RIKEN cDNA 9130015G15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-116581474-4	chr8	116581375	116581575	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029441, intron 5 of 6)	intron (NM_029441, intron 5 of 6)	76460.0	NM_029297	75465.0	Mm.23114	NM_029297	ENSMUSG00000034467	Dynlrb2	1700009A04Rik|DNLC2B|Dncl2b	dynein light chain roadblock-type 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-116088962-3	chr9	116088862	116089062	+	820.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009371, exon 8 of 8)	3' UTR (NM_009371, exon 8 of 8)	86401.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-31092886-2	chr5	31092786	31092986	+	701.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347323, intron 2 of 8)	CpG	641.0	NM_011773	22784.0	Mm.1396	NM_011773	ENSMUSG00000029151	Slc30a3	Znt3	solute carrier family 30 (zinc transporter), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-126141192-3	chr4	126141137	126141337	+	850.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001145827)	TTS (NM_001145827)	-6766.0	NM_172145	230752.0	Mm.41569	NM_172145	ENSMUSG00000050212	Eva1b	2610027C15Rik|Fam176b	eva-1 homolog B (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83457963-2	chr6	83457863	83458063	+	808.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1571.0	NM_001347313	194388.0	Mm.211030	NM_183138	ENSMUSG00000034832	Tet3	B430006D22Rik|BC037432|D230004J03Rik	tet methylcytosine dioxygenase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-31041811-4	chr7	31041691	31041891	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001111073)	promoter-TSS (NM_001111073)	48.0	NM_001111073	18301.0	Mm.1870	NM_008761	ENSMUSG00000009687	Fxyd5	EF-8|Oit2|RIC	FXYD domain-containing ion transport regulator 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-37640966-4	chr3	37640859	37641059	+	901.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011896, intron 2 of 2)	CpG-9115	1012.0	NM_011896	24063.0	Mm.330986	NM_011896	ENSMUSG00000037211	Spry1	sprouty1|spry-1	sprouty RTK signaling antagonist 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-159555065-3	chr2	159554960	159555160	+	775.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-392281.0	NR_040498	71081.0	Mm.383491	NR_040498	ENSMUSG00000085198	4933416E03Rik	-	RIKEN cDNA 4933416E03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78895278-2	chr15	78895178	78895378	+	989.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_145929)	TTS (NM_145929)	3438.0	NR_105920	102466210.0		NR_105920	ENSMUSG00000099267	Mir6955	Gm27769|mmu-mir-6955	microRNA 6955	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-46884945-4	chr14	46884812	46885012	+	944.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_028966, exon 2 of 12)	exon (NM_028966, exon 2 of 12)	1947.0	NM_001037221	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-67435608-4	chr18	67435514	67435714	+	854.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027130, intron 5 of 16)	intron (NM_027130, intron 5 of 16)	13522.0	NM_027130	69597.0	Mm.426052	NM_027130	ENSMUSG00000024527	Afg3l2	2310036I02Rik|AW260507|Emv66|par	AFG3-like AAA ATPase 2	protein-coding	-1.29366267883784	-1.26551373834737	-1.2756574132587	-0.863019910137588	-1.14611741205902	-1.26331556167873	-1.2733611076018	-1.28249824916415	-1.22377030845534	0.719508055934226	1
Merged-chr3-109478769-3	chr3	109478652	109478852	+	922.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020505, intron 2 of 26)	intron (NM_020505, intron 2 of 26)	-95255.0	NM_146139	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-75833640-4	chr12	75833525	75833725	+	961.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005510, intron 1 of 115)	intron (NM_001005510, intron 1 of 115)	15307.0	NM_001005510	319565.0	Mm.26652	NM_001005510	ENSMUSG00000063450	Syne2	6820443O06Rik|AW546258|Cpfl8|D12Ertd777e|KASH2|NUA|Nesp2g|dice|mKIAA1011	spectrin repeat containing, nuclear envelope 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-80277067-1	chr18	80276967	80277167	+	831.5	f0_balb.idr	intron (NM_025861, intron 4 of 5)	PB1D10|SINE|Alu	20761.0	NM_025861	66943.0	Mm.29247	NM_025861	ENSMUSG00000034006	Pqlc1	2310009N05Rik|4933425L21Rik|5730564E11Rik|C78974	PQ loop repeat containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-4487634-3	chr2	4487532	4487732	+	865.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 4 of 23)	intron (NM_001177843, intron 4 of 23)	-72122.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-42258562-2	chr10	42258462	42258662	+	729.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019740, intron 2 of 3)	intron (NM_019740, intron 2 of 3)	18180.0	NM_019740	56484.0	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-136171687-4	chr5	136171592	136171792	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1036.0	NM_178751	269717.0	Mm.308396	NM_178751	ENSMUSG00000039747	Orai2	A730041O15Rik|Tmem142b	ORAI calcium release-activated calcium modulator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6346753-2	chr19	6346653	6346853	+	858.125	f1_balb.idr|f1_c57bl6.idr	TTS (NR_105955)	TTS (NR_105955)	273.0	NR_105955	102465598.0		NR_105955	ENSMUSG00000099230	Mir6989	Gm27885|mmu-mir-6989	microRNA 6989	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27728144-4	chr2	27728035	27728235	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290482, intron 1 of 9)	intron (NM_001290482, intron 1 of 9)	17552.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-77457414-2	chr11	77457314	77457514	+	829.375	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001291190, exon 14 of 14)	3' UTR (NM_001291190, exon 14 of 14)	-6499.0	NM_139129	216961.0	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120738931-4	chr8	120738810	120739010	+	906.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001301811, exon 1 of 9)	5' UTR (NM_001301811, exon 1 of 9)	271.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-13130894-3	chr14	13130792	13130992	+	927.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M3a|LINE|L1	153746.0	NR_121589	328354.0	Mm.252404	NM_177813	ENSMUSG00000051729	Gm5087	C630025C03|EG328354	predicted gene 5087	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-38131973-4	chr16	38131886	38132086	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347232, intron 1 of 11)	intron (NM_001347232, intron 1 of 11)	-42726.0	NR_033221	414072.0	Mm.483602	NR_033221		BC031361	-	cDNA sequence BC031361	ncRNA	1.50917075438459	1.68451539757506	1.0804991777609	1.43978869245679	1.63930848454303	2.07445808250349	2.00168934540875	1.72113833878289	1.41372843106538	0.196256514332643	0.677629928399006
Merged-chr7-67953914-2	chr7	67953814	67954014	+	678.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010513, intron 1 of 20)	intron (NM_010513, intron 1 of 20)	1657.0	NM_010513	16001.0	Mm.275742	NM_010513	ENSMUSG00000005533	Igf1r	A330103N21Rik|CD221|D930020L01|IGF-1R|hyft	insulin-like growth factor I receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-21982393-2	chr14	21982293	21982493	+	952.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7208.0	NM_145459	218820.0	Mm.292401	NM_145459	ENSMUSG00000039081	Zfp503	AI181838|B830002A16Rik|Nolz-1|Nolz1|Znf503	zinc finger protein 503	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-174471449-2	chr2	174471349	174471549	+	606.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025531, intron 1 of 5)	intron (NM_025531, intron 1 of 5)	1492.0	NM_025531	66390.0	Mm.182294	NM_025531	ENSMUSG00000016257	Prelid3b	2310042G06Rik|AA407013|Slmo2	PRELI domain containing 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-67102300-2	chr15	67102200	67102400	+	906.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_009177)	TTS (NM_009177)	74582.0	NM_009177	20442.0	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	0.733565659185563	0.403524771470099	2.06712621482443	0.607625522674448	0.743075838662076	0.887711493364992	0.392122009342211	0.379265093504202	-2.17981467442258	0.173442145050937	0.640902961210202
Merged-chr3-144719256-4	chr3	144719133	144719333	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001282037, intron 1 of 10)	intron (NM_001282037, intron 1 of 10)	1102.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-19430356-1	chr3	19430256	19430456	+	789.0	f0_balb.idr	Intergenic	Intergenic	-78239.0	NM_001163536	66326.0	Mm.45615	NM_025489	ENSMUSG00000027606	Dnajc5b	1700008A05Rik	DnaJ heat shock protein family (Hsp40) member C5 beta	protein-coding	-0.0341117654412378	-0.0178239357826807	0.644747556200744	-0.0272753330472378	-0.0330945684596352	0.180066852767201	0.158470101677855	0.511301531050803	0.241897057852812	0.910104842309655	1
Merged-chr19-53870086-1	chr19	53869986	53870186	+	673.0	f0_balb.idr	Intergenic	Intergenic	-22145.0	NM_011050	18569.0	Mm.1605	NM_011050	ENSMUSG00000024975	Pdcd4	D19Ucla1|Ma3|Tis	programmed cell death 4	protein-coding	1.91458235199573	1.21012311376758	2.4006761597778	1.15983302305573	2.13496468750523	2.29839201352993	1.64566174127691	2.58228324993201	1.05569122183747	0.324732802887941	0.827392680372739
Merged-chr19-59345199-4	chr19	59345026	59345226	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001033222, exon 1 of 5)	exon (NM_001033222, exon 1 of 5)	654.0	NM_001033222	107368.0	Mm.27250	NM_001033222	ENSMUSG00000074746	Pdzd8	A630041P07Rik|AV329468|AW228944|Pdzk8	PDZ domain containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30585321-1	chr7	30585221	30585421	+	562.0	f1_c57bl6.idr	exon (NM_001290573, exon 3 of 37)	exon (NM_001290573, exon 3 of 37)	3405.0	NM_001290573	75410.0	Mm.168688	NM_029274	ENSMUSG00000006307	Kmt2b	2610014H22Rik|Mll2|Wbp7|mKIAA0304	lysine (K)-specific methyltransferase 2B	protein-coding	-0.469770641461414	-0.523247105022711	-0.695342270562258	-0.697221188519522	-0.57384242569234	-0.519266774029821	-0.694802148704155	-0.552163181938916	0.103252624086864	0.966636551820262	1
Merged-chr1-154097108-2	chr1	154097008	154097208	+	892.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-104079.0	NM_001204908	100503355.0	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	Gm10178|Gm203	zinc finger protein 648	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-156491402-3	chr1	156491297	156491497	+	800.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17069.0	NM_009230	20652.0	Mm.28099	NM_009230	ENSMUSG00000026600	Soat1	8430426K15Rik|ACAT-1|AW550831|Acact|ald|hid	sterol O-acyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-31713340-4	chr11	31713235	31713435	+	996.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41473.0	NM_001024919	69556.0	Mm.34183	NM_001024919	ENSMUSG00000044502	Bod1	2310022M17Rik|BOD2.1|Fam44b	biorientation of chromosomes in cell division 1	protein-coding	0.592839855929141	1.06586963223104	0.554539317514624	0.209488164818371	0.601860351059283	0.223413221705549	0.216421605304845	0.210432008678364	-2.13785865988395	0.27551215494472	1
Merged-chr15-97941519-4	chr15	97941425	97941625	+	813.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-22704.0	NM_001356508	380967.0	Mm.196630	NM_201359	ENSMUSG00000052369	Tmem106c	AI046681|BC046621|D15Ertd405e	transmembrane protein 106C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-134702157-4	chr4	134702057	134702257	+	807.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207237, intron 1 of 11)	intron (NM_207237, intron 1 of 11)	2133.0	NM_207237	230815.0	Mm.18905	NM_207237	ENSMUSG00000037306	Man1c1	AI593348	mannosidase, alpha, class 1C, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-49468623-2	chr7	49468523	49468723	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175272, intron 10 of 37)	B2_Mm2|SINE|B2	168212.0	NM_001005232	13172.0	Mm.307176	NM_001005232	ENSMUSG00000030507	Dbx1	AI426026|Dbx	developing brain homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-12579272-2	chr10	12579172	12579372	+	661.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011682, intron 50 of 73)	ORR1D1-int|LTR|ERVL-MaLR	282463.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-98605985-3	chr14	98605901	98606101	+	790.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F2|SINE|Alu	-436236.0	NM_007826	13134.0	Mm.320593	NM_007826	ENSMUSG00000055639	Dach1	Dac|Dach	dachshund family transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-55870488-4	chr7	55870355	55870555	+	997.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164661, intron 2 of 31)	B2_Mm2|SINE|B2	28384.0	NM_001164661	20430.0	Mm.37249	NM_011370	ENSMUSG00000030447	Cyfip1	E030028J09Rik|P140SRA-1|P140sra1|Shyc|Sra-1|Sra1|l(7)1Rl|l71Rl|l7Rl1|mKIAA0068|pl-1	cytoplasmic FMR1 interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95310304-2	chr3	95310204	95310404	+	805.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	-3128.0	NM_023628	71790.0	Mm.218844	NM_023628	ENSMUSG00000015702	Anxa9	1110003P15Rik|2310069F17Rik	annexin A9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-145264404-3	chr7	145264336	145264536	+	945.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132643, intron 13 of 22)	LTR41B|LTR|ERVL	19575.0	NR_132644	233979.0	Mm.102235	NM_146206	ENSMUSG00000048677	Tpcn2	D830047E22Rik|Gm35086	two pore segment channel 2	protein-coding	1.20908510880102	1.07586771622195	1.04989936166129	1.46381486014804	2.10434782896722	2.47879279415243	2.38875208298147	2.02501088224607	3.53019102617725	0.00340030349430922	0.0497118293964931
Merged-chr6-128201545-3	chr6	128201441	128201641	+	970.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17738.0	NR_077223	330427.0	Mm.426356	NR_077223	ENSMUSG00000107879	9330102E08Rik	-	RIKEN cDNA 9330102E08 gene	ncRNA	2.95453538813925	2.60649216924392	2.98588538573456	3.23972340693516	3.9795430103407	4.61853961460848	4.34264790191542	4.69331535987037	2.10878274959172	2.75517176934944e-05	0.00105950483617482
Merged-chr3-153569389-2	chr3	153569289	153569489	+	670.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011372, intron 1 of 4)	intron (NM_011372, intron 1 of 4)	155744.0	NM_011372	20447.0	Mm.296453	NM_011372	ENSMUSG00000052544	St6galnac3	Siat7c	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-20219511-2	chr13	20219410	20219610	+	913.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 4 of 21)	intron (NM_080288, intron 4 of 21)	129003.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	-0.521594827236886	-0.509332496598786	-0.513347655383506	0.126042209836964	-0.520828814027241	0.00410068327744845	-0.512461899965658	-0.515905396865185	-0.414737581300238	0.8814552430791	1
Merged-chr8-94745552-4	chr8	94745456	94745656	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009137)	promoter-TSS (NM_009137)	-128.0	NM_009137	20299.0	Mm.12895	NM_009137	ENSMUSG00000031779	Ccl22	ABCD-1|DCBCK|MDC|Scya22	chemokine (C-C motif) ligand 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-164910702-4	chr2	164910589	164910789	+	828.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_199027, exon 2 of 28)	exon (NM_199027, exon 2 of 28)	1061.0	NM_199027	329559.0	Mm.330776	NM_199027	ENSMUSG00000039834	Zfp335	1810045J01Rik|NIF-1|Nif1|Znf335	zinc finger protein 335	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89835657-4	chr3	89835566	89835766	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172530, intron 2 of 5)	intron (NM_172530, intron 2 of 5)	4296.0	NM_172530	214547.0	Mm.225	NM_172530	ENSMUSG00000046280	She	9430022A14	src homology 2 domain-containing transforming protein E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-87858841-6	chr10	87858770	87858970	+	782.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010512)	promoter-TSS (NM_010512)	-182.0	NM_001111275	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-69598992-4	chr3	69598906	69599106	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020026)	promoter-TSS (NM_020026)	-46.0	NM_020026	26879.0	Mm.153710	NM_020026	ENSMUSG00000043300	B3galnt1	B3galt3|b3GT3	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-87171696-4	chr9	87171551	87171751	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001101482, intron 2 of 3)	B3|SINE|B2	22423.0	NM_001359955	244958.0	Mm.335337	NM_001101482	ENSMUSG00000042761	Mrap2	BB633055	melanocortin 2 receptor accessory protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-58264030-2	chr15	58263930	58264130	+	868.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49138.0	NM_026346	67731.0	Mm.25683	NM_026346	ENSMUSG00000022358	Fbxo32	4833442G10Rik|AI430017|ATROGIN1|Gm20361|MAFbx	F-box protein 32	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-72222281-2	chr5	72222181	72222381	+	663.333374	f1_balb.idr|f1_c57bl6.idr	intron (NR_003966, intron 1 of 22)	intron (NR_003966, intron 1 of 22)	18938.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-57512900-3	chr8	57512799	57512999	+	950.2000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008252, intron 2 of 4)	intron (NM_008252, intron 2 of 4)	1056.0	NM_008252	97165.0	Mm.276881	NM_008252	ENSMUSG00000054717	Hmgb2	C80539|HMG-2|Hmg2	high mobility group box 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-105158316-4	chr4	105158226	105158426	+	789.462524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080555, intron 1 of 5)	CpG	979.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-62646363-4	chr11	62646261	62646461	+	971.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198861, intron 1 of 3)	intron (NM_198861, intron 1 of 3)	1688.0	NM_001357955	192976.0	Mm.339972	NM_198861	ENSMUSG00000046417	Lrrc75a	Fam211a	leucine rich repeat containing 75A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-67257744-2	chr7	67257644	67257844	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357324, intron 7 of 11)	L1M2|LINE|L1	35128.0	NM_001191051	75099.0	Mm.121691	NM_175215	ENSMUSG00000043831	Lysmd4	4930506D23Rik	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-51891940-2	chr11	51891840	51892040	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-34310.0	NM_001357588	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-138482136-2	chr3	138482014	138482214	+	827.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175224, intron 2 of 10)	intron (NM_175224, intron 2 of 10)	7268.0	NM_175224	75624.0	Mm.26833	NM_175224	ENSMUSG00000005813	Metap1	1700029C17Rik|AW047992|mKIAA0094	methionyl aminopeptidase 1	protein-coding	2.78073164370871	3.27451516306644	1.40487649619422	3.00656133941899	1.0226991087739	1.15837785633811	1.11719633469938	2.46791733387178	-2.52640576137852	0.0218760092878596	0.190378403846039
Merged-chr17-43303311-3	chr17	43303212	43303412	+	723.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133776, intron 8 of 15)	intron (NM_133776, intron 8 of 15)	32965.0	NM_133776	77596.0	Mm.159950	NM_133776	ENSMUSG00000041293	Adgrf1	5031409J19Rik|Gpr110|KPG_009	adhesion G protein-coupled receptor F1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-75131657-4	chr14	75131546	75131746	+	928.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027581)	promoter-TSS (NM_027581)	523.0	NM_001247984	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53904004-2	chr4	53903904	53904104	+	739.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	77959.0	NM_028053	52076.0	Mm.27184	NM_028053	ENSMUSG00000028420	Tmem38b	1600017F22Rik|AA437809|AV051057|D4Ertd89e|TRIC-B|mg33b	transmembrane protein 38B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126701751-2	chr7	126701651	126701851	+	873.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301374, intron 4 of 10)	intron (NM_001301374, intron 4 of 10)	2469.0	NM_001301374	12721.0	Mm.290482	NM_009898	ENSMUSG00000030707	Coro1a	Clabp|Lmb3|TACO|p57	coronin, actin binding protein 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-37029969-4	chr1	37029867	37030067	+	905.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-90440.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-184730895-4	chr1	184730794	184730994	+	751.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008250, intron 1 of 3)	intron (NM_008250, intron 1 of 3)	1599.0	NM_008250	15284.0	Mm.1347	NM_008250	ENSMUSG00000039377	Hlx	Hlx1	H2.0-like homeobox	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70959009-4	chr14	70958910	70959110	+	916.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302094, intron 3 of 7)	L1_Rod|LINE|L1	68903.0	NM_001302094	14586.0	Mm.32619	NM_008115	ENSMUSG00000022103	Gfra2	-	glial cell line derived neurotrophic factor family receptor alpha 2	protein-coding	2.42611304948657	1.26538862848705	3.02301234365263	1.67165411174323	3.02634300658502	1.27335775606575	2.35500556161185	1.8615172456301	0.0352654830038287	0.973184331814013	0.998431161219273
Merged-chr7-6191539-2	chr7	6191439	6191639	+	899.416626	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001146024, exon 5 of 5)	3' UTR (NM_001146024, exon 5 of 5)	-5551.0	NM_178028	232836.0	Mm.246599	NM_178028	ENSMUSG00000034660	Galp	-	galanin-like peptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127760494-2	chr7	127760394	127760594	+	669.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_172748, intron 7 of 10)	intron (NM_172748, intron 7 of 10)	-9321.0	NM_198424	269999.0	Mm.36852	NM_198424	ENSMUSG00000043964	Orai3	9930124N15|BC061259|Tmem142c	ORAI calcium release-activated calcium modulator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30878545-2	chr7	30878445	30878645	+	867.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001043317, intron 3 of 15)	intron (NM_001043317, intron 3 of 15)	483.0	NM_009845	12483.0	Mm.260994	NM_009845	ENSMUSG00000030577	Cd22	A530093D23|Lyb-8|Lyb8	CD22 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-67449599-4	chr17	67449465	67449665	+	744.325012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-95074.0	NM_001357625	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-104790540-4	chr3	104790447	104790647	+	930.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291859, intron 1 of 4)	intron (NM_001291859, intron 1 of 4)	1513.0	NM_001291859	11853.0	Mm.262	NM_007484	ENSMUSG00000002233	Rhoc	AI324259|Arh9|Arhc	ras homolog family member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-106320805-4	chr1	106320704	106320904	+	931.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133821, intron 4 of 16)	intron (NM_133821, intron 4 of 16)	148935.0	NM_133821	98432.0	Mm.24115	NM_133821	ENSMUSG00000044340	Phlpp1	AI836256|Phlpp|Plekhe1|SCOP|mKIAA0606	PH domain and leucine rich repeat protein phosphatase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-21653727-2	chr19	21653627	21653827	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025423)	promoter-TSS (NM_025423)	418.0	NM_146096	226016.0	Mm.28796	NM_146096	ENSMUSG00000047368	Abhd17b	5730446C15Rik|Cgi67|Fam108b|Fam108b1	abhydrolase domain containing 17B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21963623-4	chr9	21963577	21963777	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010149)	promoter-TSS (NM_010149)	-101.0	NM_010149	13857.0	Mm.2653	NM_010149	ENSMUSG00000006235	Epor	-	erythropoietin receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-46858410-4	chr17	46858290	46858490	+	817.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26977.0	NM_001100452	210982.0	Mm.37642	NM_001100452	ENSMUSG00000036568	Bicral	Gltscr1l|mKIAA0240	BRD4 interacting chromatin remodeling complex associated protein like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153239938-2	chr2	153239838	153240038	+	616.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_018807, intron 1 of 2)	intron (NM_018807, intron 1 of 2)	1420.0	NM_018807	54711.0	Mm.103199	NM_018807	ENSMUSG00000051413	Plagl2	AU018672|AW552839|mKIAA0198	pleiomorphic adenoma gene-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36269380-2	chr1	36269280	36269480	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_153408, exon 2 of 4)	exon (NM_153408, exon 2 of 4)	4045.0	NM_153408	214854.0	Mm.389110	NM_153408	ENSMUSG00000047180	Neurl3	2010300P06Rik|Lincr	neuralized E3 ubiquitin protein ligase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-31796379-1	chr11	31796279	31796479	+	601.5	f0_balb.idr	Intergenic	Intergenic	28168.0	NR_102310	414116.0	Mm.150222	NR_102310	ENSMUSG00000085772	D630024D03Rik	-	RIKEN cDNA D630024D03 gene	ncRNA	2.49565955594949	2.22193972369692	2.40737898592573	3.3288117083961	1.23810455461622	2.07225662355408	2.4271336917318	1.75880955160698	-1.67053197051974	0.0672605894289115	0.38934989641432
Merged-chr2-30720443-2	chr2	30720343	30720543	+	589.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_037272)	promoter-TSS (NR_037272)	-767.0	NR_037272	100526499.0		NR_037272	ENSMUSG00000093091	Mir3089	mir-3089|mmu-mir-3089	microRNA 3089	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139201703-2	chr5	139201603	139201803	+	674.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359496, intron 1 of 20)	intron (NM_001359496, intron 1 of 20)	1066.0	NM_001359494	77053.0	Mm.210845	NM_024451	ENSMUSG00000036817	Sun1	4632417G13Rik|5730434D03Rik|Unc84a|mKIAA0810	Sad1 and UNC84 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-64852695-4	chr16	64852586	64852786	+	922.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347245)	promoter-TSS (NM_001347245)	685.0	NM_178647	106143.0	Mm.10160	NM_178647	ENSMUSG00000054604	Cggbp1	AA960172|AL023996|AW045841	CGG triplet repeat binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118477960-5	chr11	118477870	118478070	+	948.2000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153103, intron 1 of 13)	ID4|SINE|ID	1138.0	NM_001359368	217364.0	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-135729263-5	chr1	135729228	135729428	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007791, intron 1 of 5)	CpG	161.0	NM_007791	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-21196989-2	chr5	21196881	21197081	+	858.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_153365, intron 3 of 26)	L1_Mus2|LINE|L1	10714.0	NM_001359877	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55701009-4	chr19	55700927	55701127	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045318, intron 1 of 3)	intron (NR_045318, intron 1 of 3)	1177.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-80174605-2	chr12	80174505	80174705	+	775.583374	f1_balb.idr|f1_c57bl6.idr	exon (NM_001346669, exon 15 of 21)	exon (NM_001346669, exon 15 of 21)	-41761.0	NR_033514	69548.0	Mm.269712	NR_033514		2310015A10Rik	5330419I17Rik	RIKEN cDNA 2310015A10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-58308957-4	chr14	58308827	58309027	+	903.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	236241.0	NM_013518	14180.0	Mm.8846	NM_013518	ENSMUSG00000021974	Fgf9	Eks	fibroblast growth factor 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-88361335-4	chr12	88361233	88361433	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361598, intron 1 of 9)	MER5A|DNA|hAT-Charlie	551.0	NM_001361598	72113.0	Mm.181387	NM_028105	ENSMUSG00000021044	Adck1	2610005A10Rik	aarF domain containing kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-128591469-2	chr1	128591375	128591575	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356509, intron 1 of 1)	CpG	824.0	NM_009911	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	0.771499325572939	0.309492141817243	0.635467446365343	0.840961718753046	0.289163293532897	0.31108532475895	0.997161584654478	0.29789000608328	-0.773324424186365	0.683935711240696	1
Merged-chr7-88309760-2	chr7	88309660	88309860	+	671.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_009982, exon 7 of 7)	exon (NM_009982, exon 7 of 7)	31675.0	NM_001311790	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-157426927-2	chr2	157426847	157427047	+	839.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025395, intron 1 of 13)	GA-rich|Low_complexity|Low_complexity	2654.0	NM_001025395	20779.0	Mm.22845	NM_009271	ENSMUSG00000027646	Src	AW259666|pp60c-src	Rous sarcoma oncogene	protein-coding	1.53864187318924	1.60163570010171	0.906672065787632	2.61879551567915	1.55338213336294	0.93552971092881	2.06275987639746	0.891107475314836	-1.01654689363133	0.432458373137881	0.904679012727573
Merged-chr16-93886383-1	chr16	93886283	93886483	+	576.0	f1_c57bl6.idr	intron (NM_028083, intron 3 of 13)	intron (NM_028083, intron 3 of 13)	2482.0	NM_028083	110749.0	Mm.274222	NM_028083	ENSMUSG00000022945	Chaf1b	2600017H24Rik|C76145|CAF-I p60|CAF-Ip60|CAF1|CAF1A|CAF1P60|MPHOSPH7	chromatin assembly factor 1, subunit B (p60)	protein-coding	0.111525039765726	0.999920423926062	0.131862126301747	1.312024408407	0.113447643940943	0.385712405933369	0.134000949942505	0.125638059889561	-3.65166815472642	0.0724320725690134	1
Merged-chr6-124832427-2	chr6	124832327	124832527	+	834.833313	f1_balb.idr|f1_c57bl6.idr	exon (NM_013538, exon 4 of 6)	exon (NM_013538, exon 4 of 6)	2251.0	NM_013538	14793.0	Mm.285723	NM_013538	ENSMUSG00000023505	Cdca3	2410005A12Rik|C8|Grcc8|Tome-1	cell division cycle associated 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-61147402-3	chr11	61147284	61147484	+	723.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021349, intron 3 of 3)	CpG	6549.0	NM_021349	57916.0	Mm.265915	NM_021349	ENSMUSG00000010142	Tnfrsf13b	1200009E08Rik|Taci	tumor necrosis factor receptor superfamily, member 13b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-20653481-4	chr10	20653366	20653566	+	992.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013875, intron 1 of 12)	B4A|SINE|B4	71612.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94013346-2	chr10	94013246	94013446	+	772.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001304720, intron 1 of 11)	B3|SINE|B2	22396.0	NM_001304720	215008.0	Mm.124177	NM_172538	ENSMUSG00000036099	Vezt	A630071D13Rik|AI848282	vezatin, adherens junctions transmembrane protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-51918012-3	chr1	51917919	51918119	+	822.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2041.0	NM_010863	17912.0	Mm.3390	NM_010863	ENSMUSG00000018417	Myo1b	AA406997|MIH-L|MMIa	myosin IB	protein-coding	1.22411979848862	0.564220699235046	0.905064684350652	0.547400254862962	1.15174508020702	1.34143625816637	0.751140132603582	0.548687717498942	0.677000455826558	0.676493858224488	1
Merged-chr1-61643407-1	chr1	61643307	61643507	+	593.0	f0_balb.idr	intron (NM_001081050, intron 1 of 22)	intron (NM_001081050, intron 1 of 22)	4583.0	NM_001081050	72823.0	Mm.35153	NM_001081050	ENSMUSG00000052062	Pard3b	1810008K04Rik|2010002N16Rik|2810455B10Rik|Als2cr19|PAR3B|PAR3L|PAR3beta	par-3 family cell polarity regulator beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-54201447-1	chr11	54201347	54201547	+	571.0	f0_balb.idr	intron (NR_045506, intron 2 of 2)	intron (NR_045506, intron 2 of 2)	11841.0	NR_045506	71056.0	Mm.56332	NR_045506	ENSMUSG00000086209	4933405E24Rik	-	RIKEN cDNA 4933405E24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-140594072-4	chr6	140593976	140594176	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_144920, exon 31 of 31)	3' UTR (NM_144920, exon 31 of 31)	-28587.0	NM_178803	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-84750607-3	chr6	84750511	84750711	+	776.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177077, intron 19 of 21)	intron (NM_177077, intron 19 of 21)	-156703.0	NM_001177713	232174.0	Mm.255246	NM_175475	ENSMUSG00000063415	Cyp26b1	CP26|P450RAI-2	cytochrome P450, family 26, subfamily b, polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-11756047-4	chr8	11755959	11756159	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113517, intron 1 of 18)	Tigger17|DNA|TcMar-Tigger	-2271.0	NM_017402	54126.0	Mm.244068	NM_017402	ENSMUSG00000031511	Arhgef7	Cool|PIX|Pak3bp|betaPix|betaPix-b|betaPix-c|cool-1|mKIAA0142|p85Cool1|p85SPR	Rho guanine nucleotide exchange factor (GEF7)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-68062217-4	chr18	68062161	68062361	+	955.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172631, intron 1 of 5)	intron (NM_172631, intron 1 of 5)	129088.0	NM_172631	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-127355434-4	chr3	127355336	127355536	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001327939, intron 1 of 45)	intron (NM_001327939, intron 1 of 45)	53622.0	NM_001327939	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	6.64018977248089	6.78975023196902	7.19500720076209	7.01818453121056	5.40044813449524	5.90154995644298	4.59033856404594	5.82330576629206	-1.53217043391302	3.98806830383435e-09	5.39648611008321e-07
Merged-chr5-118463639-2	chr5	118463539	118463739	+	686.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-97080.0	NM_001347445	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-75556283-2	chr10	75556183	75556383	+	624.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198860, intron 2 of 3)	intron (NM_198860, intron 2 of 3)	4047.0	NM_198860	192734.0	Mm.259320	NM_198860	ENSMUSG00000046807	Lrrc75b	AI646023|Fam211b	leucine rich repeat containing 75B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-179073157-4	chr1	179073063	179073263	+	943.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027188, intron 8 of 11)	L3b|LINE|CR1	444878.0	NM_027188	69726.0	Mm.222338	NM_027188	ENSMUSG00000055067	Smyd3	2410008A19Rik|Zmynd1	SET and MYND domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-53133424-2	chr15	53133324	53133524	+	684.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	212759.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-101161548-2	chr4	101161448	101161648	+	920.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146145, intron 16 of 24)	intron (NM_146145, intron 16 of 24)	92510.0	NM_183024	242570.0	Mm.185636	NM_183024	ENSMUSG00000035275	Raver2	A430091O22Rik	ribonucleoprotein, PTB-binding 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-62224903-4	chr18	62224802	62225002	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44802.0	NM_001013754	225609.0	Mm.296917	NM_001013754	ENSMUSG00000054589	Gm9949	EG225609	predicted gene 9949	protein-coding	4.50174358640848	3.97072928347475	5.36836912420064	3.64394126476251	3.95222742960294	4.00007640274006	3.50193476805263	4.5838346054629	-0.614252916874291	0.215388299681751	0.705944860566832
Merged-chr11-67637901-1	chr11	67637801	67638001	+	587.0	f0_balb.idr	intron (NM_001277080, intron 3 of 12)	intron (NM_001277080, intron 3 of 12)	41346.0	NM_001277079	14457.0	Mm.40338	NM_008088	ENSMUSG00000033066	Gas7	AW124766|B230343A10Rik|Gas7-cb	growth arrest specific 7	protein-coding	0.88154309382371	0.517297190651668	0.845640281107692	0.942395560751058	0.99260215791173	1.26837949935601	0.510774611375093	0.503576406649006	0.325908257349525	0.842762738891796	1
Merged-chr17-79663626-3	chr17	79663531	79663731	+	950.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201361, intron 5 of 10)	(TG)n|Simple_repeat|Simple_repeat	48731.0	NM_201361	381110.0	Mm.209801	NM_201361	ENSMUSG00000036368	Rmdn2	AW061290|Fam82a1|RMD-2|mRMD-2	regulator of microtubule dynamics 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-62760254-4	chr1	62760155	62760355	+	989.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077404, intron 7 of 16)	intron (NM_001077404, intron 7 of 16)	34477.0	NR_040601	74992.0	Mm.401979	NR_040601		4930487H11Rik	-	RIKEN cDNA 4930487H11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-75920380-5	chr15	75920229	75920429	+	942.7000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025412, intron 1 of 5)	intron (NM_025412, intron 1 of 5)	1231.0	NM_025412	66194.0	Mm.250599	NM_025412	ENSMUSG00000022571	Pycrl	1110058B13Rik|2700073G24Rik|Pycr3	pyrroline-5-carboxylate reductase-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-56000422-3	chr3	56000314	56000514	+	641.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030595, intron 24 of 57)	intron (NM_030595, intron 24 of 57)	153309.0	NR_033592	71182.0	Mm.195603	NR_033592	ENSMUSG00000106572	4933417G07Rik	-	SEC13 homolog pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-31093786-4	chr3	31093699	31093899	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1259.0	NM_001039090	20482.0	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-74679246-3	chr15	74679109	74679309	+	749.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6639.0	NM_018790	11838.0	Mm.491310	NM_018790	ENSMUSG00000022602	Arc	Arc3.1|C86064|arg3.1|mArc	activity regulated cytoskeletal-associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-165669867-2	chr1	165669767	165669967	+	632.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038846, intron 1 of 5)	intron (NM_001038846, intron 1 of 5)	-35326.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-117781103-2	chr2	117781003	117781203	+	597.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31699.0	NR_126427	100504728.0	Mm.413174	NR_126427		Gm13985	-	predicted gene 13985	ncRNA	1.17751588446702	1.35299714659413	0.871888714209253	0.667376834458207	0.655093796022107	1.36534610661631	0.877955302682012	1.36599671714451	0.262127347016091	0.858604593505593	0.998431161219273
Merged-chr1-171223411-3	chr1	171223296	171223496	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001037170)	promoter-TSS (NM_001037170)	-882.0	NM_001037170	641376.0	Mm.288374	NM_001037170	ENSMUSG00000005674	Tomm40l	-	translocase of outer mitochondrial membrane 40-like	protein-coding	2.91679949912949	3.11358860366991	2.54612077858288	2.58179130060658	1.82560395725319	2.38400378030094	2.56591233977191	2.08556105275952	-1.21796328646417	0.115922658476445	0.533161278967691
Merged-chr1-54500746-2	chr1	54500646	54500846	+	718.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163314, intron 19 of 26)	RLTR45|LTR|ERVK	56938.0	NM_001163314	241062.0	Mm.103539	NM_175508	ENSMUSG00000073678	Pgap1	5033403E17Rik|9030223K07Rik|A530084K22|D230012E17Rik|oto	post-GPI attachment to proteins 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97148784-6	chr6	97148649	97148849	+	892.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175313, intron 1 of 17)	CpG	134.0	NM_175313	101351.0	Mm.116802	NM_175313	ENSMUSG00000035245	Eogt	A130022J15Rik|AI447490|AW214473|AW259391|Aer61	EGF domain-specific O-linked N-acetylglucosamine (GlcNAc) transferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-121706229-2	chr9	121706129	121706329	+	792.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT2B3|LTR|ERVL	-1200.0	NM_001164562	215474.0	Mm.31421	NM_178677	ENSMUSG00000061536	Sec22c	4932412K21|5930407I15Rik|C530046H07|Sec22l3	SEC22 homolog C, vesicle trafficking protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-35587124-3	chr6	35587024	35587224	+	865.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	-47236.0	NM_008098	14489.0	Mm.182746	NM_008098	ENSMUSG00000029840	Mtpn	5033418D15Rik|Gcdp|V1	myotrophin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81044664-2	chr10	81044564	81044764	+	764.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_024499, exon 12 of 12)	3' UTR (NM_024499, exon 12 of 12)	-7333.0	NM_134135	106947.0	Mm.5353	NM_134135	ENSMUSG00000046822	Slc39a3	AI845814|ZIP-3|Zip3	solute carrier family 39 (zinc transporter), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102370362-3	chr12	102370249	102370449	+	722.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177620, intron 6 of 9)	YREP_Mm|Unknown|Unknown	69464.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-177796679-4	chr1	177796561	177796761	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007422)	promoter-TSS (NM_007422)	-152.0	NM_007422	11566.0	Mm.338021	NM_007422	ENSMUSG00000015961	Adss	AI314886|AS|Adss2	adenylosuccinate synthetase, non muscle	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-68888332-4	chr2	68888190	68888390	+	978.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347161, intron 1 of 10)	intron (NM_001347161, intron 1 of 10)	26849.0	NM_001347161	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120111241-2	chr8	120111141	120111341	+	907.7999880000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	-2911.0	NM_001163762	234797.0	Mm.101958	NM_172286	ENSMUSG00000031824	6430548M08Rik	AW049007|Kiaa0513|mKIAA0513	RIKEN cDNA 6430548M08 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-102032048-2	chr5	102031948	102032148	+	883.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 2 of 66)	intron (NM_172882, intron 2 of 66)	37873.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91486486-2	chr16	91486386	91486586	+	696.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010508, intron 1 of 10)	B3|SINE|B2	1271.0	NM_010508	15975.0	Mm.502	NM_010508	ENSMUSG00000022967	Ifnar1	Ifar|Ifnar|Ifrc|Infar	interferon (alpha and beta) receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-168205444-4	chr2	168205344	168205544	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310086, intron 1 of 4)	intron (NM_001310086, intron 1 of 4)	1668.0	NM_009628	11538.0	Mm.201322	NM_009628	ENSMUSG00000051149	Adnp	AA589558|mKIAA0784	activity-dependent neuroprotective protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-77280810-4	chr2	77280711	77280911	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175465)	promoter-TSS (NM_175465)	-219.0	NM_175465	228071.0	Mm.27120	NM_175465	ENSMUSG00000042272	Sestd1	1500031J16Rik|A930010O20|Solo/Trio8	SEC14 and spectrin domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-12880444-2	chr13	12880344	12880544	+	776.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-80365.0	NM_011118	18812.0	Mm.457984	NM_011118	ENSMUSG00000056457	Prl2c3	Ghd1|MRP-2|MRP-3|Mrpplf3|PLF-2|PLF-3|Plf2|Prl2c4|mrp/plf3	prolactin family 2, subfamily c, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-135617545-4	chr1	135617451	135617651	+	895.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19775.0	NR_151586	215714.0	Mm.472859	NM_175447		Gm4793	EG215714	predicted gene 4793	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-15989062-3	chr4	15988947	15989147	+	905.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013752, exon 14 of 16)	exon (NM_013752, exon 14 of 16)	24791.0	NM_001355615	209212.0	Mm.46455	NM_145950	ENSMUSG00000041153	Osgin2	BC010311|C230027H09Rik	oxidative stress induced growth inhibitor family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-114997900-3	chr4	114997812	114998012	+	726.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2206.0	NM_001304559	20460.0	Mm.3988	NM_009185	ENSMUSG00000028718	Stil	Sil	Scl/Tal1 interrupting locus	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-174016771-2	chr2	174016671	174016871	+	546.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60280.0	NM_172675	228960.0	Mm.277977	NM_172675	ENSMUSG00000027522	Stx16	4930401D03|5430410K23Rik|6330500A18Rik|AI648908|AW553605|Syn16	syntaxin 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-119300344-4	chr2	119300259	119300459	+	955.6083369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11617.0	NM_172269	228545.0	Mm.294761	NM_172269	ENSMUSG00000034216	Vps18	9930024E13Rik	VPS18 CORVET/HOPS core subunit	protein-coding	-1.53722258964646	-1.35557023456888	-1.51521609278655	-1.52305243984666	-1.24945022075946	-1.50360887271967	-1.51305647152326	-1.52164973746956	0.640848314145952	0.855386040730507	1
Merged-chr8-120322701-2	chr8	120322601	120322801	+	938.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-94471.0	NR_110496	434353.0	Mm.411793	NR_110496	ENSMUSG00000097960	A330074K22Rik	-	RIKEN cDNA A330074K22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-54438580-4	chr11	54438456	54438656	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173753, intron 1 of 17)	CpG	377.0	NM_173753	216742.0	Mm.34087	NM_173753	ENSMUSG00000035992	Fnip1	A730024A03Rik|AI838773|AW557298	folliculin interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97985878-2	chr11	97985778	97985978	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163608, intron 1 of 13)	intron (NM_001163608, intron 1 of 13)	568.0	NM_028199	72324.0	Mm.39617	NM_028199	ENSMUSG00000017417	Plxdc1	2410003I07Rik|AI848450|Tem7	plexin domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-57745561-4	chr14	57745473	57745673	+	998.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015771, intron 1 of 7)	CpG	550.0	NM_015771	50523.0	Mm.347899	NM_015771	ENSMUSG00000021959	Lats2	4932411G09Rik|AV277261|AW228608	large tumor suppressor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141443073-2	chr7	141442973	141443173	+	786.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_022654, exon 2 of 16)	exon (NM_022654, exon 2 of 16)	952.0	NM_001360523	57913.0	Mm.334321	NM_022654	ENSMUSG00000025507	Pidd1	1200011D09Rik|AU042446|Lrdd|Pidd	p53 induced death domain protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70328898-1	chr8	70328798	70328998	+	554.0	f0_balb.idr	promoter-TSS (NM_008107)	promoter-TSS (NM_008107)	-867.0	NM_008107	14559.0	Mm.258280	NM_008107	ENSMUSG00000087408	Gdf1	AI385651|Gdf-1	growth differentiation factor 1	protein-coding	-1.50417404399698	-1.47248724057959	-1.48206959147369	-1.33916669433727	-1.50194968898599	-1.47041070516711	-1.47990035727042	-1.18698362276213	0.779787177890154	0.824141860144995	1
Merged-chr4-133007162-2	chr4	133007058	133007258	+	780.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-4348.0	NM_146155	230793.0	Mm.31816	NM_146155	ENSMUSG00000037692	Ahdc1	D030015G18Rik	AT hook, DNA binding motif, containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-84876974-4	chr12	84876879	84877079	+	975.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013589)	promoter-TSS (NM_013589)	-484.0	NM_013589	16997.0	Mm.3900	NM_013589	ENSMUSG00000002020	Ltbp2	AW208642	latent transforming growth factor beta binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-67228181-2	chr7	67228081	67228281	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_175215, exon 3 of 3)	3' UTR (NM_175215, exon 3 of 3)	5565.0	NM_001191051	75099.0	Mm.121691	NM_175215	ENSMUSG00000043831	Lysmd4	4930506D23Rik	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-22479262-2	chr9	22479162	22479362	+	631.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178415, intron 2 of 22)	intron (NM_178415, intron 2 of 22)	3547.0	NM_181316	319845.0	Mm.176725	NM_178415	ENSMUSG00000035919	Bbs9	E130103I17Rik	Bardet-Biedl syndrome 9 (human)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141472677-2	chr4	141472577	141472777	+	649.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_019763, exon 12 of 16)	exon (NM_019763, exon 12 of 16)	28004.0	NM_009541	22642.0	Mm.389590	NM_009541	ENSMUSG00000006215	Zbtb17	AA589413|Lp-1|Miz1|Zfp100|mZ13	zinc finger and BTB domain containing 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141956826-2	chr4	141956726	141956926	+	778.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177868, intron 10 of 31)	intron (NM_177868, intron 10 of 31)	-26166.0	NR_040672	545691.0	Mm.332015	NR_040672	ENSMUSG00000085424	Fhad1os1	Gm13037	forkhead-associated (FHA) phosphopeptide binding domain 1, opposite strand 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-70863615-1	chr9	70863515	70863715	+	588.0	f0_balb.idr	intron (NM_001324473, intron 1 of 8)	intron (NM_001324473, intron 1 of 8)	71193.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120310967-4	chr11	120310902	120311102	+	992.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	36411.0	NR_105900	102465564.0		NR_105900	ENSMUSG00000098955	Mir6935	Gm27344|mmu-mir-6935	microRNA 6935	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-31208822-2	chr9	31208722	31208922	+	824.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357698, intron 1 of 17)	RSINE1|SINE|B4	3026.0	NM_001357698	11804.0	Mm.19133	NM_009691	ENSMUSG00000031996	Aplp2	AI790698|APLP-2|CDEBP	amyloid beta (A4) precursor-like protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-59329285-2	chr2	59329185	59329385	+	595.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 11 of 20)	intron (NM_175464, intron 11 of 20)	57397.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167683791-2	chr2	167683691	167683891	+	586.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER3|DNA|hAT-Charlie	-5124.0	NM_009883	12608.0	Mm.439656	NM_009883	ENSMUSG00000056501	Cebpb	C/EBPbeta|CRP2|IL-6DBP|LAP|LIP|NF-IL6|NF-M|Nfil6	CCAAT/enhancer binding protein (C/EBP), beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5848233-4	chr19	5848151	5848351	+	939.7374880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2771.0	NR_003513	66961.0	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6951617-4	chr19	6951515	6951715	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007522, exon 4 of 4)	3' UTR (NM_007522, exon 4 of 4)	9053.0	NM_001285453	12015.0	Mm.4387	NM_007522	ENSMUSG00000024959	Bad	AI325008|Bbc2	BCL2-associated agonist of cell death	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70632763-1	chr8	70632663	70632863	+	848.0	f1_c57bl6.idr	promoter-TSS (NM_001330687)	promoter-TSS (NM_001330687)	-307.0	NM_001330687	23886.0	Mm.31325	NM_011819	ENSMUSG00000038508	Gdf15	MIC-1|NAG-1|SBF	growth differentiation factor 15	protein-coding	3.55063662499016	3.96114010401723	2.00696536615242	3.18457078262205	2.19726266130046	2.49891905089678	1.4859724643791	3.34759795111015	-1.33479101153981	0.099132301619007	0.489863819944335
Merged-chr13-49100599-4	chr13	49100493	49100693	+	995.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290313, intron 4 of 29)	intron (NM_001290313, intron 4 of 29)	47735.0	NM_029361	75607.0	Mm.342723	NM_029361	ENSMUSG00000037989	Wnk2	1810073P09Rik|AW122246|ESTM15|X83337|mKIAA1760	WNK lysine deficient protein kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-126741663-4	chr4	126741563	126741763	+	766.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5394.0	NM_198960	332937.0	Mm.331881	NM_198960	ENSMUSG00000042477	Tfap2e	AI505200|AP-2e|Tcfap2e	transcription factor AP-2, epsilon	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-77625230-1	chr11	77625130	77625330	+	546.0	f1_c57bl6.idr	Intergenic	Intergenic	-17415.0	NM_144825	216965.0	Mm.340436	NM_144825	ENSMUSG00000017291	Taok1	2810468K05Rik|AU020252|D130018F14Rik|Map3k16|Markk|Psk2|mKIAA1361	TAO kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-164641318-4	chr2	164641223	164641423	+	934.8624880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2521.0	NM_001012723	277345.0	Mm.247244	NM_001012723	ENSMUSG00000070530	Wfdc16	BC043944|WAP16	WAP four-disulfide core domain 16	protein-coding	3.48953067844217	3.18277776899622	2.98077944916375	2.8973827688165	2.67243915355701	2.22595180206953	2.65192656337797	3.45601538197812	-0.562751923642608	0.404370923517431	0.889447996888684
Merged-chr9-114642434-1	chr9	114642334	114642534	+	552.0	f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	-2234.0	NM_153585	78893.0	Mm.283708	NM_153585	ENSMUSG00000056167	Cnot10	2600001P13Rik	CCR4-NOT transcription complex, subunit 10	protein-coding	1.04183238651008	1.19110596758898	1.2640834083975	0.824882896166668	0.634942160627112	1.44487331400749	0.656549431180462	0.980995281522022	-0.498312298371236	0.735323689644114	0.998431161219273
Merged-chr11-54986031-2	chr11	54985931	54986131	+	763.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_138556, intron 21 of 24)	intron (NR_138556, intron 21 of 24)	-23091.0	NM_001271455	57783.0	Mm.259671	NM_021327	ENSMUSG00000020400	Tnip1	ABIN|ABIN-1|ABIN1|AU018810|Naf1|Nef|VAN	TNFAIP3 interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-20986226-2	chr5	20986126	20986326	+	640.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001356590)	TTS (NM_001356590)	-34404.0	NM_001080977	242860.0	Mm.254286	NM_001080977	ENSMUSG00000039968	Rsbn1l	8430412F05Rik|AI447441|C330002G24Rik	round spermatid basic protein 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102379165-4	chr12	102379072	102379272	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177620, intron 7 of 9)	intron (NM_177620, intron 7 of 9)	60641.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4308043-3	chr16	4307943	4308143	+	636.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009624, intron 5 of 10)	intron (NM_009624, intron 5 of 10)	78814.0	NR_003628	436332.0	Mm.478141	NM_001013830	ENSMUSG00000089645	Gm5766	EG436332	ribosomal protein L7a pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-57183075-3	chr17	57182991	57183191	+	864.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11090.0	NM_019418	50930.0	Mm.483369	NM_019418	ENSMUSG00000005824	Tnfsf14	HVEM-L|HVEML|LIGHT|LTg|Ly113|Tnlg1d	tumor necrosis factor (ligand) superfamily, member 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70656739-1	chr8	70656639	70656839	+	556.0	f1_c57bl6.idr	intron (NM_023217, intron 2 of 4)	intron (NM_023217, intron 2 of 4)	2999.0	NM_023217	66522.0	Mm.154906	NM_023217	ENSMUSG00000056204	Pgpep1	2810003H13Rik|Gm19458|PAP-I|PGP|PGP-I|PGPI|Pcp	pyroglutamyl-peptidase I	protein-coding	-0.212058815003963	-0.343383922105204	-0.16869788417447	0.451803004372578	-0.20799626297601	-0.342402949070079	-0.346775675439477	-0.350505792021846	-2.79781348009796	0.227569770692831	1
Merged-chr7-110471039-2	chr7	110470939	110471139	+	815.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177324, intron 3 of 40)	intron (NM_177324, intron 3 of 40)	143881.0	NM_177324	319934.0	Mm.102970	NM_177324	ENSMUSG00000038371	Sbf2	4833411B01Rik|AA414977|AI317167|B430219L04Rik|Mtmr13|mMTMH1	SET binding factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128121259-2	chr10	128121159	128121359	+	575.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_054078, exon 16 of 30)	exon (NM_054078, exon 16 of 30)	28476.0	NM_054078	116848.0	Mm.252213	NM_054078	ENSMUSG00000040054	Baz2a	AA415431|C030005G16Rik|C78388|Tip5|Walp3|mKIAA0314	bromodomain adjacent to zinc finger domain, 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118363231-4	chr11	118363150	118363350	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7839.0	NM_011594	21858.0	Mm.206505	NM_011594	ENSMUSG00000017466	Timp2	D11Bwg1104e|Timp-2	tissue inhibitor of metalloproteinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-11554298-2	chr11	11554198	11554398	+	668.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	65032.0	NM_028669	73862.0	Mm.159077	NM_028669	ENSMUSG00000020191	Spata48	4930415F15Rik	spermatogenesis associated 48	protein-coding	1.05830151858771	0.628869536115544	0.885243756414057	1.05530049402052	0.688499491241555	0.436214164630634	0.428713836745065	0.422303578616447	-2.87000565582978	0.106931942362825	1
Merged-chr6-97305129-2	chr6	97305029	97305229	+	634.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 18 of 23)	intron (NM_145148, intron 18 of 23)	-52349.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80835480-4	chr7	80835382	80835582	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-26626.0	NM_009553	22691.0	Mm.358645	NM_009553	ENSMUSG00000038797	Zscan2	Zfp-29|Zfp29	zinc finger and SCAN domain containing 2	protein-coding	-1.84362945061595	-1.81329140012928	-1.67810947190254	-1.83000206547234	-1.84149977556685	-1.81130325271815	-1.67603257143677	-1.82865309133977	0.037684011990387	0.991491645451152	1
Merged-chr7-28159663-2	chr7	28159563	28159763	+	612.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164655, intron 17 of 19)	intron (NM_001164655, intron 17 of 19)	-10085.0	NM_007991	14113.0	Mm.4595	NM_007991	ENSMUSG00000046865	Fbl	AL022665|FIB|FLRN|RNU3IP1	fibrillarin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127509124-4	chr10	127509004	127509204	+	916.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_177707)	TTS (NM_177707)	-5835.0	NM_001098789	407790.0	Mm.336856	NM_001098789	ENSMUSG00000040280	Ndufa4l2	BC064011	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-152428757-4	chr3	152428635	152428835	+	957.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001287139, exon 4 of 14)	exon (NM_001287139, exon 4 of 14)	32051.0	NM_001287139	108946.0	Mm.379292	NM_198416	ENSMUSG00000039068	Zzz3	3110065C23Rik|6430567E01Rik|AA408566|AI481057|AW556059|R75514	zinc finger, ZZ domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-86099483-3	chr11	86099387	86099587	+	937.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178309, intron 16 of 19)	intron (NM_178309, intron 16 of 19)	-75137.0	NR_046030	629393.0	Mm.372867	NR_046030		Gm20759	-	predicted gene, 20759	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-33508899-2	chr4	33508799	33508999	+	554.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	70818.0	NR_106198	102465904.0		NR_106198	ENSMUSG00000098310	Mir8118	Gm27954|mmu-mir-8118	microRNA 8118	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-136861185-3	chr6	136861031	136861231	+	829.9111330000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3531.0	NM_026639	109978.0	Mm.31840	NM_026639	ENSMUSG00000030217	Art4	4432404K01Rik|ARTC4|DO|DOK1	ADP-ribosyltransferase 4	protein-coding	3.58420196669908	2.84835513225521	2.44601728751565	1.46605545399198	4.20396470751701	1.90562376107697	3.6715556086747	3.42750539330808	1.15147501638262	0.1520553448285	0.605697220203301
Merged-chr11-69666232-4	chr11	69666133	69666333	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291058)	promoter-TSS (NM_001291058)	-63.0	NR_110993	12514.0	Mm.15819	NM_009853	ENSMUSG00000018774	Cd68	Lamp4|Scard1|gp110	CD68 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-90510135-4	chr18	90510052	90510252	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198295)	promoter-TSS (NM_198295)	-2.0	NM_198295	67988.0	Mm.268041	NM_198295	ENSMUSG00000024614	Tmx3	6430411B10Rik|A730024F05Rik|AV259382|Txndc10|mKIAA1830	thioredoxin-related transmembrane protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102877586-6	chr12	102877495	102877695	+	968.2777710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172806, intron 1 of 11)	CpG	811.0	NM_172806	238386.0	Mm.63456	NM_172806	ENSMUSG00000041702	Btbd7	5730507E09Rik|8030448M07|E130118E17Rik|FUP1|mKIAA1525	BTB (POZ) domain containing 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-102453456-2	chr11	102453365	102453565	+	942.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_010575, exon 30 of 30)	exon (NM_010575, exon 30 of 30)	-5802.0	NM_199200	217219.0	Mm.259924	NM_199200	ENSMUSG00000034685	Fam171a2	-	family with sequence similarity 171, member A2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-145238563-1	chr7	145238463	145238663	+	1000.0	f1_c57bl6.idr	intron (NR_132644, intron 24 of 24)	intron (NR_132644, intron 24 of 24)	-30444.0	NR_033626	100040049.0	Mm.102235	NR_033626	ENSMUSG00000109305	1810010D01Rik	Gm2572	RIKEN cDNA 1810010D01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65393138-2	chr9	65393038	65393238	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-1486.0	NM_028974	74492.0	Mm.159223	NM_028974	ENSMUSG00000054978	Kbtbd13	5430433E21Rik	kelch repeat and BTB (POZ) domain containing 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-55120651-2	chr3	55120551	55120751	+	581.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001144987, intron 2 of 8)	intron (NM_001144987, intron 2 of 8)	8485.0	NM_001144987	229285.0	Mm.235523	NM_144895	ENSMUSG00000036580	Spg20	AI840044|C79168|SPARTIN|Spart|TAHCCP1|mKIAA0610	spastic paraplegia 20, spartin (Troyer syndrome) homolog (human)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-61265918-2	chr19	61265818	61266018	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37500.0	NM_009970	12982.0	Mm.287228	NM_009970	ENSMUSG00000059326	Csf2ra	CD116|Csfgmra|GM-CSF-Ra|GM-CSFR	colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-10433528-4	chr16	10433437	10433637	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013778, intron 1 of 6)	intron (NM_001013778, intron 1 of 6)	13825.0	NM_001359069	383103.0	Mm.325732	NM_001013778	ENSMUSG00000050908	Tvp23a	Fam18a	trans-golgi network vesicle protein 23A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-119113405-2	chr2	119113305	119113505	+	690.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_011234, intron 1 of 9)	intron (NM_011234, intron 1 of 9)	588.0	NM_011234	19361.0	Mm.330492	NM_011234	ENSMUSG00000027323	Rad51	AV304093|Rad51a|Reca	RAD51 recombinase	protein-coding	0.966238397012725	1.99385248553808	2.40362669329554	1.97159227199456	0.971438126931507	2.01022849437031	1.02551460371356	1.98288384914222	-0.906016146687326	0.470299322384055	0.925692944111129
Merged-chr13-100451335-4	chr13	100451212	100451412	+	943.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008670, intron 1 of 15)	ID_B1|SINE|B4	1552.0	NM_008670	17940.0	Mm.6898	NM_008670	ENSMUSG00000021640	Naip1	AV364616|Birc1a|D13Lsd1|Naip|Naip-rs1	NLR family, apoptosis inhibitory protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-35086042-2	chr7	35085942	35086142	+	997.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	G-rich|Low_complexity|Low_complexity	-29476.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150034602-2	chr4	150034502	150034702	+	667.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25579.0	NM_173371	100198.0	Mm.22183	NM_173371	ENSMUSG00000028980	H6pd	AI785303|G6pd1|Gpd-1|Gpd1	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-181597212-2	chr2	181597112	181597312	+	597.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_172676, exon 3 of 5)	exon (NM_172676, exon 3 of 5)	1935.0	NM_172676	229011.0	Mm.205422	NM_172676	ENSMUSG00000038605	Samd10	D930033N23Rik|E130318E08	sterile alpha motif domain containing 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65605720-2	chr9	65605620	65605820	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18560.0	NM_001357527	208084.0	Mm.211032	NM_172453	ENSMUSG00000041064	Pif1	4631410M14|AI449441	PIF1 5'-to-3' DNA helicase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-77713947-3	chr10	77713833	77714033	+	814.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001287074, intron 1 of 11)	intron (NM_001287074, intron 1 of 11)	-1874.0	NM_001205035	100502921.0	Mm.486156	NM_001205035	ENSMUSG00000094146	Gm10142	-	predicted gene 10142	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-124897861-4	chr8	124897770	124897970	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001111141)	promoter-TSS (NM_001111141)	-16.0	NM_001111141	244666.0	Mm.482915	NM_001111141	ENSMUSG00000031986	Sprtn	Gm505	SprT-like N-terminal domain	protein-coding	3.37313063513729	1.73656444402525	2.88414401100346	4.40153348551813	4.12051174306386	2.52376114756054	3.88953252856072	3.71135117708254	0.361698074384517	0.614665452173658	0.977257714216349
Merged-chr2-122631491-2	chr2	122631391	122631591	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001033256, exon 1 of 2)	exon (NM_001033256, exon 1 of 2)	866.0	NM_001033256	214616.0	Mm.271306	NM_001033256		Spata5l1	AV141009|C130039A10Rik	spermatogenesis associated 5-like 1	protein-coding	1.67408859493929	2.36593834156681	2.59522271581778	1.26678179369835	1.39901916464836	1.35186630883038	2.09442740247805	1.03155489607305	-1.49274745917679	0.18261148659906	0.656766371767242
Merged-chr18-38911953-1	chr18	38911853	38912053	+	568.0	f0_balb.idr	intron (NM_001033789, intron 3 of 4)	intron (NM_001033789, intron 3 of 4)	6746.0	NM_010197	14164.0	Mm.241282	NM_010197	ENSMUSG00000036585	Fgf1	Dffrx|Fam|Fgf-1|Fgfa	fibroblast growth factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-142764489-3	chr5	142764395	142764595	+	762.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122730, intron 12 of 27)	intron (NM_001122730, intron 12 of 27)	52892.0	NM_178242	231861.0	Mm.354649	NM_178242	ENSMUSG00000039477	Tnrc18	BC025631|EG381742|Zfp469	trinucleotide repeat containing 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-82630703-1	chr10	82630603	82630803	+	639.0	f1_c57bl6.idr	intron (NM_001358517, intron 1 of 9)	intron (NM_001358517, intron 1 of 9)	861.0	NR_037190	624784.0	Mm.284252	NR_037190		Gm9855	-	thymine DNA glycosylase pseudogene	pseudo	0.285168401835895	0.309020980456887	0.301260225631356	1.05276003262856	0.978532037407279	0.839053881134451	0.302976194101503	0.474576234956503	0.734751184719672	0.698392028524406	1
Merged-chr18-5856392-2	chr18	5856292	5856492	+	590.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	263745.0	NM_001360981	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-40626269-4	chr19	40626169	40626369	+	902.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304721, intron 1 of 9)	L1MA4|LINE|L1	13903.0	NM_001304721	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-36123667-3	chr17	36123616	36123816	+	913.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F1|LTR|ERVL-MaLR	-2272.0	NR_046286	15024.0	Mm.426031	NM_010395	ENSMUSG00000079491	H2-T10	H-2T10	histocompatibility 2, T region locus 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128781233-4	chr10	128781134	128781334	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9676.0	NM_001164197	58223.0	Mm.131266	NM_021412	ENSMUSG00000025355	Mmp19	-	matrix metallopeptidase 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-30950039-4	chr5	30949974	30950174	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_003522)	promoter-TSS (NR_003522)	8.0	NR_003522	57742.0	Mm.389615	NM_021304	ENSMUSG00000006638	Abhd1	LABH-1|LABH1	abhydrolase domain containing 1	protein-coding	4.16712247886409	3.55498353384751	3.70591320658963	3.42491636171576	3.84671715808307	3.86380573848814	4.99883343283346	4.25197520191025	0.785310730422384	0.106005284020303	0.507927874471082
Merged-chr10-43174208-2	chr10	43174108	43174308	+	772.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_102361)	promoter-TSS (NR_102361)	322.0	NM_175407	109205.0	Mm.153750	NM_175407	ENSMUSG00000038248	Sobp	2900009C16Rik|5330439J01Rik|JXC1|jc	sine oculis binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-12319021-2	chr15	12318921	12319121	+	739.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-2475.0	NM_025673	66629.0	Mm.157655	NM_025673	ENSMUSG00000022200	Golph3	4733401N08Rik|5730410D03Rik|AW413496	golgi phosphoprotein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-136559012-4	chr1	136558923	136559123	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65878.0	NM_177643	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-53585316-4	chr15	53585227	53585427	+	834.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177225, intron 4 of 4)	intron (NM_177225, intron 4 of 4)	28952.0	NR_039538	100628567.0		NR_039538	ENSMUSG00000104794	Mir28c	mmu-mir-28c	microRNA 28c	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-8638345-2	chr16	8638245	8638445	+	648.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025708)	promoter-TSS (NM_025708)	638.0	NM_016881	54128.0	Mm.9699	NM_016881	ENSMUSG00000022711	Pmm2	AI585868|C86848	phosphomannomutase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-33129508-2	chr2	33129408	33129608	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355201, intron 1 of 29)	intron (NM_001355201, intron 1 of 29)	1111.0	NM_001355200	99326.0	Mm.41290	NM_178888	ENSMUSG00000038860	Garnl3	AW120551	GTPase activating RANGAP domain-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-20632459-4	chr11	20632351	20632551	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038625, intron 1 of 1)	CpG	474.0	NM_001038625	58172.0	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-68172952-3	chr17	68172871	68173071	+	874.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-100826.0	NM_177278	320858.0	Mm.137356	NM_177278	ENSMUSG00000041565	L3mbtl4	A730037L19Rik|D930040M24Rik	L3MBTL4 histone methyl-lysine binding protein	protein-coding	0.876659353305772	0.783626455123779	0.442297157267193	0.724302104920683	0.792336496525056	0.791089137666946	0.443733131308457	0.728863506416104	-0.129750238635149	0.936041697271125	1
Merged-chr2-26315551-4	chr2	26315428	26315628	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199146)	promoter-TSS (NM_001199146)	-5.0	NM_001199146	67839.0	Mm.266611	NM_153410	ENSMUSG00000026930	Gpsm1	1810037C22Rik|AW107933|Ags3	G-protein signalling modulator 1 (AGS3-like, C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-98868411-2	chr15	98868311	98868511	+	587.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033276, intron 1 of 54)	intron (NM_001033276, intron 1 of 54)	2794.0	NM_001033276	381022.0	Mm.264889	NM_001033276	ENSMUSG00000048154	Kmt2d	ALR|BC032281|BC058659|C430014K11Rik|KMT2B|Mll2|Mll4	lysine (K)-specific methyltransferase 2D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71632127-4	chr8	71632018	71632218	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029873, intron 39 of 41)	intron (NM_001029873, intron 39 of 41)	-1012.0	NR_106035	102466799.0		NR_106035	ENSMUSG00000098976	Mir6769b	Gm27546|mmu-mir-6769b	microRNA 6769b	ncRNA	3.19038308925778	3.29330750305078	4.44895924705196	3.08075217440721	4.04550082383483	2.76297097962679	4.39742016973864	2.56657085670309	0.0635209183567185	0.92189415004016	0.998431161219273
Merged-chr4-3648444-4	chr4	3648335	3648535	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8071.0	NR_040643	70143.0	Mm.417835	NR_040643	ENSMUSG00000085394	2210414B05Rik	-	RIKEN cDNA 2210414B05 gene	ncRNA	3.45665429081686	3.79409263093042	2.35540045557697	2.72588371534634	2.3351661600195	3.68758606532087	2.95245053871325	3.32018682304091	-0.0768328467483286	0.910505361600458	0.998431161219273
Merged-chr10-128489646-4	chr10	128489551	128489751	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001114096, exon 29 of 29)	3' UTR (NM_001114096, exon 29 of 29)	3358.0	NM_001317220	17904.0	Mm.337074	NM_010860	ENSMUSG00000090841	Myl6	ESMLC|LC17|LC17-GI|MLC-3|MLC1SM|Myln	myosin, light polypeptide 6, alkali, smooth muscle and non-muscle	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-107901632-2	chr5	107901532	107901732	+	631.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016980, intron 1 of 7)	intron (NM_016980, intron 1 of 7)	1104.0	NM_016980	100503670.0	Mm.277897	NM_016980	ENSMUSG00000058558	Rpl5	U21RNA	ribosomal protein L5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-89006040-4	chr11	89005918	89006118	+	604.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009546, intron 2 of 8)	intron (NM_009546, intron 2 of 8)	6615.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	-1.84354474832578	-1.81325489144778	-1.53416061964661	-1.82993901100912	-1.8414184563789	-1.81126990231468	-1.82034119297928	-1.82859217979378	-1.52252619601533	0.665276690233728	1
Merged-chr4-134247606-1	chr4	134247506	134247706	+	574.0	f1_c57bl6.idr	Intergenic	Intergenic	-2015.0	NM_024215	68040.0	Mm.300404	NM_024215	ENSMUSG00000028840	Zfp593	3110024A21Rik|AV062409|E130106C14Rik|ZNF593	zinc finger protein 593	protein-coding	0.151410885302022	0.836117995760228	0.166993830820367	0.161167331319853	0.152869100022027	0.84798458396673	0.168652769055849	0.851679908766544	1.07258298184362	0.608379265960072	1
Merged-chr11-63811276-1	chr11	63811176	63811376	+	568.0	f0_balb.idr	Intergenic	Intergenic	111008.0	NM_018805	54710.0	Mm.274426	NM_018805	ENSMUSG00000070407	Hs3st3b1	3-OST-3B|3OST3B1|3Ost3b|AU041882|AW536289|Hs3st3b|m3-OST-3B	heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	protein-coding	-0.461785281850189	-0.706982417290714	-0.709991728695926	-0.555011017297856	-0.715557838582999	-0.70630220788368	-0.7093291719137	-0.193749735503131	0.585606662804991	0.832911216203547	1
Merged-chr8-86903314-4	chr8	86903202	86903402	+	769.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18044.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	4.17263184739504	3.88411862212924	3.75687392182727	3.65289443954053	3.69850165765724	3.5559173023776	3.78561701374688	4.39379979997503	0.0273131309806455	0.954265054469387	0.998431161219273
Merged-chr17-36035485-2	chr17	36035347	36035547	+	939.541626	f1_balb.idr|f1_c57bl6.idr	intron (NR_015618, intron 1 of 1)	intron (NR_015618, intron 1 of 1)	-2746.0	NM_010398	15040.0	Mm.439648	NM_010398	ENSMUSG00000067212	H2-T23	37b|37c|H-2T23|H2-Qa1|Qa-1|Qa-1(b)|Qa1|Qed-1|T18c|T18c(37)|T23b|T23d	histocompatibility 2, T region locus 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-27691065-2	chr3	27690965	27691165	+	754.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356953, intron 1 of 26)	intron (NM_001356953, intron 1 of 26)	19387.0	NM_001356953	72007.0	Mm.38832	NM_173182	ENSMUSG00000039286	Fndc3b	1600019O04Rik|AW550168|Fad104|mKIAA4164	fibronectin type III domain containing 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-86648623-1	chr4	86648523	86648723	+	885.25	f0_balb.idr	Intergenic	Intergenic	21436.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-83843001-3	chr7	83842887	83843087	+	786.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41354.0	NM_030705	80889.0	Mm.272998	NM_030705	ENSMUSG00000070462	Tlnrd1	AW061151|Mesdc1	talin rod domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-105519632-3	chr9	105519521	105519721	+	750.277771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253831, intron 1 of 26)	intron (NM_001253831, intron 1 of 26)	1636.0	NM_001253831	235574.0	Mm.326247	NM_175025	ENSMUSG00000032570	Atp2c1	1700121J11Rik|ATP2C1A|AW061228|BCPM|D930003G21Rik|HHD|SPCA|pmr1	ATPase, Ca++-sequestering	protein-coding	4.3324248503114	3.53609545302181	3.50564993468812	3.88789835482533	3.17337756056551	2.97629788092616	3.76655742523102	3.42481274669269	-0.748875057119546	0.159624596142014	0.619263603528309
Merged-chr9-108990041-6	chr9	108989813	108990013	+	860.111145	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1989.0	NM_173019	270198.0	Mm.132391	NM_173019	ENSMUSG00000025648	Pfkfb4	C230090D14	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-90834201-4	chr8	90834183	90834383	+	945.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177224, intron 1 of 39)	intron (NM_177224, intron 1 of 39)	5448.0	NM_177224	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	3.14485005704702	3.1677205517935	2.69746937482187	2.25232101395837	2.85020133344918	2.25071401084307	1.49749109562916	2.73524469390709	-0.827284337946184	0.308402701421236	0.809295017856989
Merged-chr5-110211500-4	chr5	110211405	110211605	+	730.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347389, intron 17 of 23)	MTB_Mm|LTR|ERVL-MaLR	-19499.0	NM_001253814	71782.0	Mm.288442	NM_027922	ENSMUSG00000029501	Ankle2	1110001J12Rik|AI661024|D5Ertd585e	ankyrin repeat and LEM domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-40994867-3	chr19	40994758	40994958	+	609.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008528)	promoter-TSS (NM_008528)	-323.0	NM_008528	17060.0	Mm.9749	NM_008528	ENSMUSG00000061132	Blnk	BASH|Bca|Ly-57|Ly57|Lyw-57|SLP-65	B cell linker	protein-coding	-0.0520594035846317	-0.507539786449747	-0.511265653646284	-0.514135633058337	0.126383442287617	-0.506698995047892	-0.510444466537128	-0.513634547488846	0.613048320368843	0.827142336386976	1
Merged-chr5-29772849-3	chr5	29772751	29772951	+	965.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359198, intron 8 of 8)	intron (NM_001359198, intron 8 of 8)	-36915.0	NR_028426	332993.0	Mm.473746	NR_028426		Gm5129	EG332993	predicted gene 5129	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166994765-2	chr2	166994665	166994865	+	758.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001109905, intron 1 of 11)	intron (NM_001109905, intron 1 of 11)	1534.0	NM_011490	20853.0	Mm.73276	NM_011490	ENSMUSG00000039536	Stau1	5830401L18Rik|AW549911|C85792|Stau	staufen double-stranded RNA binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-132233646-2	chr7	132233546	132233746	+	586.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-78905.0	NM_018867	55987.0	Mm.471654	NM_018867	ENSMUSG00000030862	Cpxm2	4632435C11Rik|CPX-2|Cpx2	carboxypeptidase X 2 (M14 family)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-10732679-2	chr16	10732579	10732779	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177562, intron 22 of 22)	intron (NM_177562, intron 22 of 22)	52857.0	NM_009896	12703.0	Mm.130	NM_009896	ENSMUSG00000038037	Socs1	Cish1|Cish7|JAB|SOCS-1|SSI-1	suppressor of cytokine signaling 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-46389864-4	chr4	46389779	46389979	+	870.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029086)	promoter-TSS (NM_029086)	-442.0	NM_001347095	74753.0	Mm.45973	NM_029086	ENSMUSG00000028331	Trmo	5830415F09Rik|AV014846|Nap1	tRNA methyltransferase O	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-28070320-2	chr5	28070220	28070420	+	819.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1092.0	NM_153526	231070.0	Mm.30221	NM_153526	ENSMUSG00000045294	Insig1	1810013C12Rik|Insig-1	insulin induced gene 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36557778-13	chr1	36557648	36557848	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001304330)	promoter-TSS (NM_001304330)	-191.0	NM_001304329	20353.0	Mm.29558	NM_001126047	ENSMUSG00000026121	Sema4c	AI426163|M-Sema F|Semacl1|Semaf|Semai|sema I	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-8887971-2	chr19	8887871	8888071	+	626.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025463)	promoter-TSS (NM_025463)	799.0	NR_027866	67531.0	Mm.475113	NR_027866		5730408K05Rik	2610018C13Rik	RIKEN cDNA 5730408K05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-26962220-2	chr2	26962120	26962320	+	588.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_207234, intron 2 of 7)	L2a|LINE|L2	2166.0	NM_207234	227656.0	Mm.291874	NM_207234	ENSMUSG00000052406	Rexo4	Gm111|Rex4|Xpmc2h	REX4, 3'-5' exonuclease	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-53822089-4	chr15	53822006	53822206	+	782.62915	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177225, intron 2 of 4)	intron (NM_177225, intron 2 of 4)	80330.0	NM_177225	320679.0	Mm.442455	NM_177225	ENSMUSG00000058656	Samd12	A830094I09Rik	sterile alpha motif domain containing 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-81343566-2	chr7	81343466	81343666	+	947.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009092, intron 4 of 4)	intron (NM_009092, intron 4 of 4)	1668.0	NM_009092	20068.0	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-20698269-4	chr18	20698151	20698351	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019737, intron 5 of 8)	L1M4|LINE|L1	-32991.0	NR_155534	102633478.0		NR_155534	ENSMUSG00000085595	Gm16090	-	predicted gene 16090	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-37955590-4	chr18	37955503	37955703	+	958.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153793)	promoter-TSS (NM_153793)	44.0	NM_153793	225392.0	Mm.233516	NM_153793	ENSMUSG00000044024	Rell2	4631403P03Rik|ependolin	RELT-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-119794186-6	chr7	119794112	119794312	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027698)	promoter-TSS (NM_027698)	25.0	NM_001004187	434234.0	Mm.38237	NM_028129	ENSMUSG00000030924	Rexo5	2610020H08Rik	RNA exonuclease 5	protein-coding	-1.8418762459921	-1.8125357239735	-1.82140854000656	-1.82869693527674	-1.56059678980999	-1.8106129477253	-1.81939992894326	-1.82739231600805	1.3620893379502	0.699511506488145	1
Merged-chr13-101592549-4	chr13	101592442	101592642	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	100088.0	NM_001024955	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-28732770-4	chr12	28732685	28732885	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161410, intron 3 of 11)	intron (NM_001161410, intron 3 of 11)	17609.0	NM_001161410	217449.0	Mm.132006	NM_178811	ENSMUSG00000020628	Trappc12	CGI-87|D930014A20Rik|Ttc15	trafficking protein particle complex 12	protein-coding	6.15148602107296	6.88846783885266	6.37700547886436	7.00665118268367	5.8365789118171	5.96259711254802	5.28682746292698	6.73477851717115	-0.638490731285718	0.0273044729518913	0.222452965013666
Merged-chr8-13892121-2	chr8	13892021	13892221	+	612.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TTTA)n|Simple_repeat|Simple_repeat	-1850.0	NM_025556	66423.0	Mm.29063	NM_025556	ENSMUSG00000031458	Coprs	1700029I03Rik|2410022L05Rik|AA409325|AI256813|C85432|Copr5	coordinator of PRMT5, differentiation stimulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-133632715-4	chr7	133632658	133632858	+	733.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4917.0	NM_178115	214764.0	Mm.174044	NM_145995	ENSMUSG00000039990	Edrf1	2700050L05Rik|AU022667|AW558805	erythroid differentiation regulatory factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31608546-2	chr14	31608446	31608646	+	783.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019975, intron 16 of 16)	intron (NM_019975, intron 16 of 16)	-31163.0	NM_009937	382864.0	Mm.239821	NM_009937	ENSMUSG00000057606	Colq	A130034K24Rik	collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-170565058-3	chr1	170564949	170565149	+	666.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109985, intron 1 of 9)	intron (NM_001109985, intron 1 of 9)	-7939.0	NR_154593	70729.0	Mm.409310	NM_027528	ENSMUSG00000038473	Nos1ap	6330408P19Rik|Capon	nitric oxide synthase 1 (neuronal) adaptor protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-19990769-2	chr19	19990669	19990869	+	718.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	399902.0	NM_010730	16952.0	Mm.248360	NM_010730	ENSMUSG00000024659	Anxa1	Anx-1|Anx-A1|C430014K04Rik|Lpc-1|Lpc1	annexin A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-126181324-3	chr4	126181226	126181426	+	829.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356455, intron 3 of 11)	intron (NM_001356455, intron 3 of 11)	-17985.0	NM_001162533	66938.0	Mm.29813	NM_025856	ENSMUSG00000073758	Sh3d21	1700029G01Rik|AU019788	SH3 domain containing 21	protein-coding	0.634824606631318	0.0139164581883489	1.12112651946726	0.000369477143587399	0.164624440090038	0.0156200902713149	0.00799118771891855	0.00141036644421669	-3.45376872287043	0.106211794301197	1
Merged-chr15-50819996-3	chr15	50819881	50820081	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310485, intron 5 of 7)	intron (NM_001310485, intron 5 of 7)	69068.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-25827470-2	chr15	25827370	25827570	+	689.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1|SINE|Alu	-15828.0	NM_001034851	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-56673151-4	chr19	56673027	56673227	+	957.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Charlie5|DNA|hAT-Charlie	-49245.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-48561086-3	chr9	48560972	48561172	+	925.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44051.0	NM_010924	18113.0	Mm.8362	NM_010924	ENSMUSG00000032271	Nnmt	-	nicotinamide N-methyltransferase	protein-coding	2.13400426696623	2.45771193780905	1.38758200282962	1.6360218923431	3.80344549267437	3.74951021120965	2.54608993148142	4.45287356073197	3.22962530298041	3.45972347305702e-05	0.00129988817003355
Merged-chr17-24895206-4	chr17	24895135	24895335	+	978.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163102)	promoter-TSS (NM_001163102)	115.0	NM_023260	79044.0	Mm.328851	NM_023260	ENSMUSG00000038880	Mrps34	0610007F04Rik|5330430D13Rik|AV001970|Tce2	mitochondrial ribosomal protein S34	protein-coding	2.36176080172972	2.35857655831465	1.8820538816001	1.23749081137116	2.29975434454998	1.29713497016639	2.40131615483925	2.50531519455415	0.403424282654125	0.696067365439087	0.997923870727665
Merged-chr5-120778989-2	chr5	120778889	120779089	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1330.0	NM_145226	246727.0	Mm.204887	NM_145226	ENSMUSG00000032661	Oas3	Oasl10	2'-5' oligoadenylate synthetase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3998808-2	chr19	3998708	3998908	+	605.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001320, intron 7 of 7)	intron (NM_001001320, intron 7 of 7)	-1772.0	NM_025529	66387.0	Mm.259222	NM_025529	ENSMUSG00000110949	Nudt8	2310039H17Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-98129033-3	chr3	98128935	98129135	+	893.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010928, intron 22 of 33)	intron (NM_010928, intron 22 of 33)	-31599.0	NM_027665	71078.0	Mm.50711	NM_027665	ENSMUSG00000043468	Adam30	4933424D07Rik|svph4	a disintegrin and metallopeptidase domain 30	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83220906-2	chr11	83220806	83221006	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2670.0	NR_015519	100043636.0	Mm.295569	NR_015519	ENSMUSG00000087107	AI662270	AW496474	expressed sequence AI662270	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-28754479-4	chr13	28754359	28754559	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045053, intron 3 of 8)	intron (NR_045053, intron 3 of 8)	-43586.0	NR_105787	102466635.0		NR_105787	ENSMUSG00000099158	Mir6368	Gm27800|mmu-mir-6368	microRNA 6368	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76626996-4	chr15	76626897	76627097	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001305668)	promoter-TSS (NM_001305668)	-913.0	NM_001305668	66914.0	Mm.30028	NM_025842	ENSMUSG00000115987	Vps28	1110014J03Rik|CIIA|D730005C08Rik	vacuolar protein sorting 28	protein-coding	3.33504899926683	3.56464329685015	4.18540013963561	3.43387576785454	3.69932895845383	3.84593898411347	4.16334857467548	3.05642746784653	0.1098682179773	0.83518356836582	0.998431161219273
Merged-chr7-127588670-4	chr7	127588587	127588787	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172281)	promoter-TSS (NM_172281)	-11.0	NM_172281	233900.0	Mm.41122	NM_172281	ENSMUSG00000030816	Rnf40	AI848422|BRE1-B|mKIAA0661	ring finger protein 40	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-40722415-3	chr19	40722259	40722459	+	888.900024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304721, intron 3 of 9)	intron (NM_001304721, intron 3 of 9)	62589.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-42351620-2	chr6	42351520	42351720	+	984.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_011777, exon 5 of 10)	exon (NM_011777, exon 5 of 10)	1792.0	NM_001289618	22793.0	Mm.282303	NM_011777	ENSMUSG00000029860	Zyx	9530098H06Rik|R75157	zyxin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-53377896-1	chr13	53377796	53377996	+	838.0	f1_balb.idr	promoter-TSS (NM_009269)	promoter-TSS (NM_009269)	-535.0	NM_009269	268656.0	Mm.240336	NM_009269	ENSMUSG00000021468	Sptlc1	AW552086|C77762|E030036H05|Lcb1|SPT1	serine palmitoyltransferase, long chain base subunit 1	protein-coding	1.01202212285352	1.30392388071374	0.715332174901803	0.704681463176157	1.4633049990388	1.78463391580207	0.718347679634049	1.3437828084081	1.7763714987341	0.225623511431236	0.717692251401288
Merged-chr1-80716200-4	chr1	80716100	80716300	+	982.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175291, intron 1 of 55)	intron (NM_175291, intron 1 of 55)	42353.0	NM_175291	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-98339231-4	chr7	98339124	98339324	+	972.81665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18016.0	NM_001360615	66190.0	Mm.334041	NM_025408	ENSMUSG00000030760	Acer3	1110057L18Rik|5430429L08Rik|AV015045|Phca|aPHC	alkaline ceramidase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-29276958-2	chr7	29276858	29277058	+	564.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011464, intron 1 of 6)	intron (NM_011464, intron 1 of 6)	5019.0	NM_001082548	20733.0	Mm.295230	NM_011464	ENSMUSG00000074227	Spint2	AL024025|C76321|HAI-2	serine protease inhibitor, Kunitz type 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94487108-5	chr10	94486953	94487153	+	810.233337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 2 of 4)	intron (NM_001359762, intron 2 of 4)	-27804.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-105554213-1	chr12	105554113	105554313	+	576.0	f1_balb.idr	Intergenic	Intergenic	-8959.0	NM_009747	12062.0	Mm.390475	NM_009747	ENSMUSG00000021070	Bdkrb2	B(2)|B2|B2R|BK-2|BK2|BK2R|BKR2|BRB2	bradykinin receptor, beta 2	protein-coding	1.84907367765914	2.20986930881358	1.36774969432164	1.68873223898236	2.38174139711215	2.5263444385214	1.37713430012714	1.10500690884279	0.494821123442117	0.651514023306078	0.986293985805819
Merged-chr17-47716528-2	chr17	47716428	47716628	+	568.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10314.0	NM_025973	109820.0	Mm.22957	NM_025973	ENSMUSG00000023987	Pgc	2210410L06Rik|Upg-1|Upg1	progastricsin (pepsinogen C)	protein-coding	-2.05752322593321	-2.15521190974092	-2.16307242109104	-2.16952927915413	-2.17938029103484	-2.15350850414045	-2.16129297361887	-2.16837350464794	-0.683654500252594	0.846597994014493	1
Merged-chr3-107910323-2	chr3	107910223	107910423	+	563.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14110.0	NR_015459	329735.0	Mm.270500	NM_177858	ENSMUSG00000086968	4933431E20Rik	-	RIKEN cDNA 4933431E20 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-179561247-4	chr1	179561165	179561365	+	688.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146105, intron 1 of 10)	intron (NM_146105, intron 1 of 10)	14736.0	NM_146105	226744.0	Mm.87662	NM_146105	ENSMUSG00000038949	Cnst	9630058J23Rik	consortin, connexin sorting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-120749375-2	chr5	120749275	120749475	+	925.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347448, intron 1 of 11)	intron (NM_001347448, intron 1 of 11)	473.0	NM_145227	246728.0	Mm.260926	NM_145227	ENSMUSG00000032690	Oas2	Oasl11	2'-5' oligoadenylate synthetase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-106722186-4	chr3	106722085	106722285	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028081, intron 1 of 2)	CpG	503.0	NM_001286685	321000.0	Mm.259638	NM_028081	ENSMUSG00000056260	Lrif1	2010012G17Rik|4933421E11Rik|AI450568	ligand dependent nuclear receptor interacting factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-158166772-4	chr2	158166677	158166877	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20385.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-9556546-3	chr3	9556437	9556637	+	971.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133218, intron 2 of 8)	intron (NM_133218, intron 2 of 8)	53548.0	NM_133218	170753.0	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	2.8768993444297	3.25281713245742	3.54110636127397	3.98283377808948	4.10705299955662	4.19220402033429	3.65251574194868	3.8869091103004	0.728050113219676	0.155675937588662	0.610928767307068
Merged-chr12-32280317-4	chr12	32280200	32280400	+	848.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(GGA)n|Simple_repeat|Simple_repeat	-71651.0	NM_001146200	30955.0	Mm.101369	NM_020272	ENSMUSG00000020573	Pik3cg	5830428L06Rik|PI3Kgamma|p110gamma	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-37489466-3	chr13	37489386	37489586	+	967.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	144141.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	4.41884412657382	4.6254215480774	4.34299067309331	5.43942144613597	2.3407866031143	2.51811228238663	2.77439065817906	1.54234216814888	-3.603284461745	2.33672074922853e-09	3.53394649780385e-07
Merged-chr19-10308477-2	chr19	10308377	10308577	+	762.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3600.0	NM_198114	269060.0	Mm.329718	NM_198114	ENSMUSG00000035735	Dagla	Nsddr	diacylglycerol lipase, alpha	protein-coding	0.526506782302654	1.84621232299768	0.563350745541054	0.782539486283365	0.530043787877251	1.86450905193038	0.567156637143526	1.4060358323774	0.499595706732917	0.757405466058934	0.998431161219273
Merged-chr16-25042150-4	chr16	25042060	25042260	+	896.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17479.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-123187124-3	chr10	123186994	123187194	+	823.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301628, intron 1 of 20)	intron (NM_001301628, intron 1 of 20)	9925.0	NM_027604	14479.0	Mm.244209	NM_027604	ENSMUSG00000020124	Usp15	4921514G19Rik|AI327321|E430033I05Rik|Gcap18	ubiquitin specific peptidase 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-111877940-2	chr8	111877840	111878040	+	746.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-1265.0	NM_025781	66817.0	Mm.345350	NM_025781	ENSMUSG00000031953	Tmem170	9030409E16Rik|AA403674|D8Bwg1414e|Tmem170a	transmembrane protein 170	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-84816398-2	chr11	84816298	84816498	+	914.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145433, intron 2 of 4)	B4A|SINE|B4	3117.0	NM_145433	217038.0	Mm.280825	NM_145433	ENSMUSG00000018405	Mrm1	A530065E19Rik	mitochondrial rRNA methyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-49456332-3	chr7	49456230	49456430	+	849.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175272, intron 7 of 37)	intron (NM_175272, intron 7 of 37)	180505.0	NM_001005232	13172.0	Mm.307176	NM_001005232	ENSMUSG00000030507	Dbx1	AI426026|Dbx	developing brain homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-148867776-1	chr3	148867676	148867876	+	765.0	f0_balb.idr	intron (NM_001081298, intron 2 of 23)	intron (NM_001081298, intron 2 of 23)	86859.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-74383449-2	chr1	74383349	74383549	+	786.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_013612, exon 10 of 15)	exon (NM_013612, exon 10 of 15)	-8160.0	NM_153088	227292.0	Mm.165042	NM_153088	ENSMUSG00000026176	Ctdsp1	GIP|NLIIF|Nif3|SCP1	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-111490022-4	chr13	111489943	111490143	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001122963)	promoter-TSS (NM_001122963)	84.0	NM_028487	73274.0	Mm.57286	NM_028487	ENSMUSG00000032745	Gpbp1	1700034P14Rik|AU019836|D230035M11Rik|Gpbp|mGPBP	GC-rich promoter binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-108305433-2	chr9	108305333	108305533	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016802)	promoter-TSS (NM_016802)	726.0	NM_133986	102791.0	Mm.24670	NM_133986	ENSMUSG00000039461	Tcta	9130410M22Rik|AW553637|C85065|Tctal	T cell leukemia translocation altered gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117245550-2	chr8	117245450	117245650	+	571.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	-11469.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-105143266-2	chr5	105143166	105143366	+	546.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3680.0	NM_001359080	17472.0	Mm.440525	NM_008620	ENSMUSG00000079363	Gbp4	AW228052|Mag-2|Mpa-2|Mpa2	guanylate binding protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-90113827-4	chr9	90113727	90113927	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039147, intron 1 of 12)	intron (NM_001039147, intron 1 of 12)	993.0	NM_001039147	21761.0	Mm.426209	NM_024431	ENSMUSG00000062270	Morf4l1	MORFRG15|MRG15|TEG-189|Tex189|mKIAA4002	mortality factor 4 like 1	protein-coding	5.85991322767296	5.42740020325687	5.54141656686661	5.51445542002747	5.66583998324993	5.28074767979566	5.63224163958818	5.89466070446059	0.043779458598463	0.86910169417498	0.998431161219273
Merged-chr10-57794095-2	chr10	57793995	57794195	+	588.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020561)	promoter-TSS (NM_020561)	-449.0	NM_020561	57319.0	Mm.2379	NM_020561	ENSMUSG00000019872	Smpdl3a	0610010C24Rik|AI529588|ASM3A|ASML3|ASML3A	sphingomyelin phosphodiesterase, acid-like 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-24789901-3	chr12	24789785	24789985	+	841.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41714.0	NM_026037	67216.0	Mm.167671	NM_026037	ENSMUSG00000020646	Mboat2	2810049G06Rik|AU022889|AW547221|LPCAT4|Moact2|Oact2	membrane bound O-acyltransferase domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-60773533-2	chr18	60773433	60773633	+	598.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1063.0	NM_020600	20044.0	Mm.43778	NM_020600	ENSMUSG00000024608	Rps14	2600014J02Rik|AL023078	ribosomal protein S14	protein-coding	-1.52696403314699	-1.49523967873556	-1.5048333853602	-1.51271394162622	-1.52473704212565	-1.49316068248889	-1.50266158046844	-1.06847079017215	2.01069003169785	0.564432837776867	1
Merged-chr5-20934793-4	chr5	20934709	20934909	+	904.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080977, intron 1 of 7)	intron (NM_001080977, intron 1 of 7)	-16180.0	NR_030699	320770.0	Mm.491217	NR_030699	ENSMUSG00000101013	A630072M18Rik	Aptr	RIKEN cDNA A630072M18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-111583319-3	chr10	111583223	111583423	+	918.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10950.0	NR_045344	71321.0	Mm.410785	NR_045344	ENSMUSG00000097082	4933440J02Rik	-	RIKEN cDNA 4933440J02 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-58359160-4	chr13	58359055	58359255	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-4208.0	NM_175214	75050.0	Mm.385742	NM_175214	ENSMUSG00000060176	Kif27	4930517I18Rik	kinesin family member 27	protein-coding	-0.0506246483341526	-0.0245585595455413	0.964679345311191	-0.0395213070164522	-0.0489569279621976	-0.022685524653721	0.980896293220884	-0.0383672236603453	0.0411024359562296	0.985638187048853	1
Merged-chr5-99254522-2	chr5	99254422	99254622	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1595.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-119343272-3	chr9	119343146	119343346	+	868.2000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357516, intron 3 of 10)	intron (NM_001357516, intron 3 of 10)	1952.0	NM_001357516	113868.0	Mm.205266	NM_130864	ENSMUSG00000036138	Acaa1a	Acaa|Acaa1|D9Ertd25e|PTL	acetyl-Coenzyme A acyltransferase 1A	protein-coding	2.16931704267814	2.43880583076929	3.44179186655537	2.65959606935248	3.09449592664544	2.09332483286796	2.21214020385256	3.10950558407197	-0.0961969199571886	0.901873512011625	0.998431161219273
Merged-chr13-44732727-4	chr13	44732638	44732838	+	919.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205043, intron 1 of 17)	intron (NM_001205043, intron 1 of 17)	1467.0	NM_001205043	16468.0	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-22750225-1	chr15	22750125	22750325	+	558.0	f1_balb.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-35241.0	NM_001165971	545091.0	Mm.475598	NM_001165971		Hnrnpa1l2-ps2	EG545091|Gm5803	heterogeneous nuclear ribonucleoprotein A1-like 2, pseudogene 2	protein-coding	-0.314965298552109	-0.547314572789586	-0.55032458040815	-0.403458479457037	-0.115932701068804	-0.546633013583004	-0.549662609393744	-0.400946275311034	0.727470274341848	0.772690652525295	1
Merged-chr1-170867814-4	chr1	170867711	170867911	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081304)	promoter-TSS (NM_001081304)	-40.0	NM_001081304	226641.0	Mm.377046	NM_001081304	ENSMUSG00000026663	Atf6	9130025P16Rik|9630036G24|AA789574|Atf6alpha|ESTM49	activating transcription factor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152618545-2	chr1	152618445	152618645	+	606.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346119, intron 2 of 17)	B3|SINE|B2	6672.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-32090436-2	chr14	32090336	32090536	+	567.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145460, intron 1 of 7)	ORR1B1|LTR|ERVL-MaLR	4708.0	NM_145460	218885.0	Mm.202257	NM_145460	ENSMUSG00000021906	Oxnad1	2410002F01Rik|AW492292|BC019806	oxidoreductase NAD-binding domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-32077597-4	chr19	32077496	32077696	+	908.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018830, intron 2 of 23)	L1_Mur3|LINE|L1	25544.0	NM_018830	54447.0	Mm.491229	NM_018830	ENSMUSG00000024887	Asah2	AI585898	N-acylsphingosine amidohydrolase 2	protein-coding	-1.17367364971587	-1.14665061133654	-1.15856004380685	-1.16834280623128	-1.17310571790619	-1.14406978763884	-0.42938571406771	-1.16659169643457	2.89727187181404	0.396361616615464	1
Merged-chr3-35933611-4	chr3	35933483	35933683	+	859.616699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001205361)	promoter-TSS (NM_001205361)	-617.0	NM_001205361	114893.0	Mm.374810	NM_033623	ENSMUSG00000027708	Dcun1d1	Rp42|SCCRO|Tes3|pTes3	DCN1, defective in cullin neddylation 1, domain containing 1 (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80796376-2	chr10	80796276	80796476	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_199322)	TTS (NM_199322)	2250.0	NM_023900	78670.0	Mm.41479	NM_023900	ENSMUSG00000035278	Plekhj1	9530063M10Rik	pleckstrin homology domain containing, family J member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-126702680-4	chr4	126702583	126702783	+	913.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011970, intron 3 of 5)	intron (NM_011970, intron 3 of 5)	25040.0	NM_011970	26445.0	Mm.22233	NM_011970	ENSMUSG00000028837	Psmb2	AU045357|AW108089|C7-I|D4Wsu33e|HC7-I	proteasome (prosome, macropain) subunit, beta type 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-108212335-3	chr6	108212204	108212404	+	884.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010585)	promoter-TSS (NM_010585)	-792.0	NM_010585	16438.0	Mm.227912	NM_010585	ENSMUSG00000030102	Itpr1	D6Pas2|Gm10429|IP3R 1|IP3R1|InsP3R|Ip3r|Itpr-1|P400|Pcp-1|Pcp1|insP3R1|opt|wblo	inositol 1,4,5-trisphosphate receptor 1	protein-coding	-0.361426398914919	-0.609096226811014	-0.612411476379412	-0.0037580733871399	-0.477088944029249	-0.608347364679666	-0.611681248436157	-0.614516507565956	-2.37792351894507	0.372438025384883	1
Merged-chr7-127118011-4	chr7	127117890	127118090	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133686, intron 1 of 3)	intron (NM_133686, intron 1 of 3)	4039.0	NM_133686	67375.0	Mm.26928	NM_133686	ENSMUSG00000030674	Qprt	2410027J01Rik|AI647766|QPRTase	quinolinate phosphoribosyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-88244274-2	chr7	88244184	88244384	+	679.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33801.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-19183589-2	chr10	19183489	19183689	+	632.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_038022, intron 1 of 1)	intron (NR_038022, intron 1 of 1)	16351.0	NR_038022	100504265.0	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-52014921-4	chr14	52014844	52015044	+	957.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253695)	promoter-TSS (NM_001253695)	-386.0	NM_001253695	69890.0	Mm.475652	NM_027248	ENSMUSG00000049295	Zfp219	2010302A17Rik|Znf219	zinc finger protein 219	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-142459293-4	chr5	142459201	142459401	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_199068, exon 9 of 9)	3' UTR (NM_199068, exon 9 of 9)	-4630.0	NM_172725	231855.0	Mm.78250	NM_172725	ENSMUSG00000039623	Ap5z1	C330006K01Rik	adaptor-related protein complex 5, zeta 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-3715646-3	chr2	3715528	3715728	+	837.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025626, intron 1 of 3)	intron (NM_025626, intron 1 of 3)	2170.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-67813741-3	chr14	67813632	67813832	+	777.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177780, intron 20 of 51)	intron (NM_177780, intron 20 of 51)	46013.0	NR_105857	102465310.0		NR_105857	ENSMUSG00000098866	Mir6539	Gm27464|mir-6539|mmu-mir-6539	microRNA 6539	ncRNA	1.53820101559512	1.59567381556585	2.00142230443818	1.17093878915819	1.84689116337839	0.997356876784084	2.01885820056844	0.962453490806994	-0.160414076864322	0.897604621914757	0.998431161219273
Merged-chr18-75996531-2	chr18	75996431	75996631	+	751.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145356, intron 2 of 4)	intron (NM_145356, intron 2 of 4)	-62795.0	NM_001357506	207259.0	Mm.159332	NM_145356	ENSMUSG00000044646	Zbtb7c	B230208J24Rik|Kr-pok|Zbtb36	zinc finger and BTB domain containing 7C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-144256730-4	chr5	144256606	144256806	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163709, intron 2 of 2)	intron (NM_001163709, intron 2 of 2)	1481.0	NM_018772	55950.0	Mm.38011	NM_018772	ENSMUSG00000047843	Bri3	I3	brain protein I3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-9901226-4	chr10	9901138	9901338	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081344)	promoter-TSS (NM_001081344)	-198.0	NM_001081344	78808.0	Mm.331751	NM_030191	ENSMUSG00000019790	Stxbp5	0710001E20Rik|4930565N16Rik|AW742610|LGL3|mKIAA1006	syntaxin binding protein 5 (tomosyn)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-18666455-2	chr3	18666355	18666555	+	632.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-185978.0	NR_040544	73959.0	Mm.60616	NR_040544	ENSMUSG00000102699	4930433B08Rik	-	RIKEN cDNA 4930433B08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-108911749-4	chr3	108911646	108911846	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356292)	promoter-TSS (NM_001356292)	-17.0	NM_001356292	66921.0	Mm.51049	NM_025845	ENSMUSG00000027881	Prpf38b	1110021E09Rik|AU018955	PRP38 pre-mRNA processing factor 38 (yeast) domain containing B	protein-coding	3.80680537717811	4.95451842918207	4.19808655160836	4.83665508500349	4.65033365249502	5.0661164868347	4.79853154586524	4.10224579624245	0.215951116680972	0.599948890227685	0.972727943912401
Merged-chr13-110941823-4	chr13	110941748	110941948	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38002.0	NR_131194	102636142.0	Mm.417611	NR_131194		4930526H09Rik	-	RIKEN cDNA 4930526H09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-34619663-4	chr6	34619545	34619745	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347100, intron 1 of 13)	intron (NM_001347100, intron 1 of 13)	21141.0	NM_001347100	109624.0	Mm.308134	NM_145575	ENSMUSG00000029761	Cald1	4833423D12Rik|AI195384|AV071549|AW536160|C920027I18Rik	caldesmon 1	protein-coding	5.00517508753162	4.56864039232857	5.41588325142307	4.98952551971493	4.22250890798876	3.85184157226481	5.18325068645338	5.10921541851739	-0.387301667950923	0.324459543932096	0.827219640184567
Merged-chr13-113424001-4	chr13	113423861	113424061	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	78883.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-137861742-3	chr4	137861633	137861833	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199307)	promoter-TSS (NM_199307)	-504.0	NM_199307	230857.0	Mm.401062	NM_199307	ENSMUSG00000057530	Ece1	AW322500|ECE-1|ECE-1a|ECE-1b|ECE-1d	endothelin converting enzyme 1	protein-coding	3.57405258208831	3.69957081428165	3.79572606035311	3.93086898772029	3.25246411493969	2.81586362376084	3.6060215933166	3.71222112232422	-0.544307250707412	0.299022812169327	0.800409222377854
Merged-chr7-19063657-2	chr7	19063557	19063757	+	580.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159671, intron 2 of 4)	B2_Mm2|SINE|B2	8970.0	NM_001159671	83434.0	Mm.84435	NM_031255	ENSMUSG00000040866	Rsph6a	RSP4|Rshl1	radial spoke head 6 homolog A (Chlamydomonas)	protein-coding	-0.662826441749988	-1.00555184936033	-1.01675512286785	-1.01992432642343	-0.654846858003193	-1.00312405325568	-1.01421894731451	-1.01959449741028	0.0418081237259606	0.989738874530268	1
Merged-chr1-72237314-5	chr1	72237193	72237393	+	785.993347	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6700.0	NR_155355	320933.0	Mm.440953	NR_155355		D230017M19Rik	B930094L07Rik	RIKEN cDNA D230017M19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-67946634-2	chr14	67946534	67946734	+	851.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13062.0	NM_177780	68813.0	Mm.258155	NM_177780	ENSMUSG00000044447	Dock5	1110060D06Rik|AI666732|AI956923|BC016533|E130320D18|lr2|rlc	dedicator of cytokinesis 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27434364-2	chr2	27434264	27434464	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6756.0	NM_009500	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-7017255-2	chr19	7017155	7017355	+	779.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001362399, intron 2 of 14)	L2|LINE|L2	2214.0	NM_153795	108101.0	Mm.157591	NM_153795	ENSMUSG00000024965	Fermt3	C79673|Kindlin3	fermitin family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-32890620-4	chr12	32890483	32890683	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	63206.0	NR_044986	74076.0	Mm.50114	NR_044986	ENSMUSG00000097494	4933406C10Rik	-	RIKEN cDNA 4933406C10 gene	ncRNA	-1.06395895171058	-1.17915230354246	-1.18950462513768	-1.03964706817834	-1.20310534643066	-1.17690891226704	-0.872105569997003	-1.19648617116438	0.202116566762126	0.948606490569026	1
Merged-chr12-118711753-2	chr12	118711653	118711853	+	703.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-134576.0	NM_177082	320145.0	Mm.51682	NM_177082	ENSMUSG00000048562	Sp8	D930049B17Rik|mBtd	trans-acting transcription factor 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-114895620-1	chr6	114895520	114895720	+	549.0	f1_c57bl6.idr	intron (NM_001356371, intron 2 of 5)	B3A|SINE|B2	26201.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-42776987-2	chr19	42776889	42777089	+	752.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001362410, intron 2 of 16)	B3|SINE|B2	1657.0	NM_001362410	192236.0	Mm.218381	NM_019424	ENSMUSG00000025188	Hps1	6030422N11Rik|BB405864|Gm21361|Hps|ep	HPS1, biogenesis of lysosomal organelles complex 3 subunit 1	protein-coding	-0.141106533094532	-0.080595489246224	-0.267009974910714	-0.270045532466409	0.179379133012786	0.212466638925613	-0.266140242238163	-0.269515994769737	1.85429258632822	0.428141033629109	1
Merged-chr7-43563494-4	chr7	43563370	43563570	+	933.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001008549, intron 1 of 4)	intron (NM_001008549, intron 1 of 4)	1100.0	NM_001008549	210104.0	Mm.333821	NM_001008549	ENSMUSG00000056592	Zfp658	-	zinc finger protein 658	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-69977678-4	chr12	69977588	69977788	+	963.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022028, intron 2 of 4)	MLT1F1|LTR|ERVL-MaLR	9314.0	NM_022028	64010.0	Mm.390480	NM_022028	ENSMUSG00000021067	Sav1	1700040G09Rik|Salv|Sav|WW45|Wwp3|Wwp4	salvador family WW domain containing 1	protein-coding	3.17560983336364	4.0045491370394	2.72228495224462	2.88791826496893	2.9567886266617	3.21181068009852	3.29742622624407	3.19753510041526	-0.213967594850533	0.729946164238279	0.998431161219273
Merged-chr11-117769147-3	chr11	117769044	117769244	+	765.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_154387, exon 15 of 19)	non-coding (NR_154387, exon 15 of 19)	10504.0	NR_154387	217353.0	Mm.286963	NM_145439	ENSMUSG00000025572	Tmc6	D11Ertd204e|EVER1	transmembrane channel-like gene family 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-30435555-4	chr14	30435456	30435656	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028981, intron 1 of 46)	intron (NM_028981, intron 1 of 46)	-22480.0	NR_131095	77710.0	Mm.410773	NR_131095		4831407H17Rik	-	RIKEN cDNA 4831407H17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-34922303-4	chr19	34922202	34922402	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001362434)	promoter-TSS (NM_001362434)	-56.0	NM_001362434	240641.0	Mm.278471	NM_183046	ENSMUSG00000024795	Kif20b	33cex|C330014J10Rik|MPP1|Mphosph1|magoo	kinesin family member 20B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46367187-2	chr19	46367087	46367287	+	767.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029186, intron 2 of 8)	intron (NM_029186, intron 2 of 8)	10307.0	NM_029186	75146.0	Mm.159290	NM_029186	ENSMUSG00000025227	Mfsd13a	4930449A08Rik|4930538D17Rik|Tmem180	major facilitator superfamily domain containing 13a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134016435-4	chr6	134016309	134016509	+	787.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-19291.0	NM_001303102	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	-0.378862047495912	-0.364870876367801	-0.369445668913775	0.367602648756389	-0.377986272553064	-0.363840813843051	-0.368435933903431	0.185811407421716	-0.553727429006611	0.835242855312051	1
Merged-chr6-86539616-4	chr6	86539506	86539706	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_037961, intron 3 of 4)	intron (NR_037961, intron 3 of 4)	12205.0	NR_037961	72012.0	Mm.349174	NR_037960	ENSMUSG00000097048	1600020E01Rik	-	RIKEN cDNA 1600020E01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24703434-2	chr17	24703334	24703534	+	642.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_145396, intron 12 of 21)	B2_Mm1a|SINE|B2	4219.0	NM_145396	213773.0	Mm.100353	NM_145396	ENSMUSG00000040688	Tbl3	9430070M15Rik	transducin (beta)-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-29815400-1	chr7	29815300	29815500	+	690.0	f1_c57bl6.idr	promoter-TSS (NM_001145880)	promoter-TSS (NM_001145880)	-672.0	NM_146185	233056.0	Mm.224766	NM_146185	ENSMUSG00000011427	Zfp790	6330581L23Rik	zinc finger protein 790	protein-coding	-0.371874139817479	-0.907497544543158	-0.91575832747622	-0.917883676395731	-0.653929632727339	-0.904885094889076	-0.915149760356743	-0.917512775697636	-1.10787147514619	0.724568129051228	1
Merged-chr6-128424703-4	chr6	128424603	128424803	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133927, intron 1 of 11)	CpG	207.0	NM_133927	101142.0	Mm.31345	NM_133927	ENSMUSG00000001518	Itfg2	2700050P07Rik|AI646725	integrin alpha FG-GAP repeat containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150556540-4	chr4	150556444	150556644	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 11 of 22)	intron (NM_001085492, intron 11 of 22)	95630.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-100108441-2	chr12	100108341	100108541	+	976.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3890.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-104214343-4	chr12	104214214	104214414	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009251)	promoter-TSS (NM_009251)	-140.0	NM_009251	20715.0	Mm.312628	NM_009251		Serpina3g	2A2|AI119734|Spi2-1|Spi2/eb.1|Spi2A|spi2	serine (or cysteine) peptidase inhibitor, clade A, member 3G	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167496555-4	chr2	167496456	167496656	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030743, intron 1 of 7)	L3|LINE|CR1	-3682.0	NM_001356523	263876.0	Mm.34342	NM_170756	ENSMUSG00000047030	Spata2	AI504642|mKIAA0757	spermatogenesis associated 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-106135131-2	chr8	106135031	106135231	+	882.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040344)	promoter-TSS (NR_040344)	-269.0	NR_040345	69771.0	Mm.393274	NR_040344		1810019D21Rik	-	RIKEN cDNA 1810019D21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-96167395-4	chr9	96167276	96167476	+	823.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177352, intron 11 of 16)	intron (NM_177352, intron 11 of 16)	-28899.0	NM_001184706	211586.0	Mm.17977	NM_178667	ENSMUSG00000032411	Tfdp2	1110029I05Rik|A330080J22Rik|DP-3|DP3	transcription factor Dp 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-55816671-2	chr16	55816571	55816771	+	651.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159395, intron 7 of 12)	intron (NM_001159395, intron 7 of 12)	5467.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-51942414-4	chr14	51942296	51942496	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19623.0	NM_001011687	497071.0	Mm.378602	NM_001011687	ENSMUSG00000068392	Rnase13	-	ribonuclease, RNase A family, 13 (non-active)	protein-coding	5.23680002512366	5.69430425080167	6.32618149312304	5.72258520529617	5.66364123887715	5.78561114107009	6.23055524102004	5.5033438018265	0.0281463298900442	0.922359143634247	0.998431161219273
Merged-chr2-160729961-4	chr2	160729858	160730058	+	906.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1352.0	NM_021280	18803.0	Mm.44463	NM_021280	ENSMUSG00000016933	Plcg1	AI894140|Cded|Plc-1|Plc-gamma1|Plcg-1	phospholipase C, gamma 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30705668-1	chr2	30705568	30705768	+	545.0	f0_balb.idr	Intergenic	Intergenic	-15542.0	NR_037272	100526499.0		NR_037272	ENSMUSG00000093091	Mir3089	mir-3089|mmu-mir-3089	microRNA 3089	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-53779770-1	chr19	53779670	53779870	+	681.0	f1_c57bl6.idr	intron (NM_001170847, intron 1 of 13)	intron (NM_001170847, intron 1 of 13)	102464.0	NM_001170847	73713.0	Mm.313695	NM_001170847	ENSMUSG00000043639	Rbm20	1110018J23Rik|2010003H22Rik|AI646761	RNA binding motif protein 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-83216687-2	chr17	83216587	83216787	+	766.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_134117, intron 1 of 6)	intron (NM_134117, intron 1 of 6)	1404.0	NM_134117	106522.0	Mm.311974	NM_134117	ENSMUSG00000024247	Pkdcc	AI115348|AW548124|Adtk1|ESTM17|MAd1|Sgk493|Vlk|X83346	protein kinase domain containing, cytoplasmic	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-21380894-4	chr16	21380807	21381007	+	755.412476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42211.0	NM_001285893	209018.0	Mm.235683	NM_145948	ENSMUSG00000033653	Vps8	AI315068|AU040738|mKIAA0804	VPS8 CORVET complex subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-164857537-5	chr2	164857459	164857659	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011125, intron 1 of 15)	CpG-8831	149.0	NM_011125	18830.0	Mm.6105	NM_011125	ENSMUSG00000017754	Pltp	Bpife|OD107	phospholipid transfer protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171249944-1	chr1	171249844	171250044	+	598.0	f1_c57bl6.idr	promoter-TSS (NM_172845)	promoter-TSS (NM_172845)	-185.0	NM_172845	240913.0	Mm.491147	NM_172845	ENSMUSG00000006403	Adamts4	ADAM-TS4|ADAMTS-2|ADMP-1	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 4	protein-coding	-1.02282169565898	-1.00457289942404	-0.566983280971186	-0.718896391650237	-1.02232946032566	-1.00208123094242	-1.01346801823495	-1.01915704588286	-2.76352993728863	0.379598525188825	1
Merged-chr1-123929301-2	chr1	123929201	123929401	+	892.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_199021, intron 1 of 25)	RMER13A2|LTR|ERVK	116258.0	NM_199021	269109.0	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127628746-3	chr10	127628649	127628849	+	845.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7601.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-40323491-2	chr9	40323391	40323591	+	976.833374	f1_balb.idr|f1_c57bl6.idr	intron (NR_151734, intron 3 of 18)	intron (NR_151734, intron 3 of 18)	-2168.0	NM_001357622	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-39062461-2	chr17	39062361	39062561	+	717.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14576.0	NM_001177582	100126779.0	Mm.471589	NM_001177582	ENSMUSG00000096697	Esp23	Gm20581	exocrine gland secreted peptide 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-118759751-2	chr1	118759617	118759817	+	604.0	f0_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	131772.0	NM_023755	81879.0	Mm.24621	NM_023755	ENSMUSG00000026380	Tfcp2l1	1810030F05Rik|4932442M07Rik|AA575098|Cp2l1|Crtr-1|D930018N21Rik|LBP-9|Tcfcp2l1	transcription factor CP2-like 1	protein-coding	0.0699417534098601	0.427821186193549	-0.184060629057078	0.339569812902791	-0.19274886879169	-0.178333843748832	-0.183030395306985	-0.18703368826724	-3.76541781772959	0.103867027770546	1
Merged-chr12-80807551-4	chr12	80807464	80807664	+	943.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001242419, intron 1 of 6)	intron (NM_001242419, intron 1 of 6)	17032.0	NM_001242419	217684.0	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-55153074-4	chr9	55152968	55153168	+	917.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346658, intron 1 of 12)	intron (NM_001346658, intron 1 of 12)	2985.0	NM_001346658	109161.0	Mm.207894	NM_180600	ENSMUSG00000032307	Ube2q2	3010021M21Rik	ubiquitin-conjugating enzyme E2Q family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-130921408-6	chr4	130921305	130921505	+	976.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010686, intron 1 of 7)	intron (NM_010686, intron 1 of 7)	8071.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-39430914-4	chr6	39430816	39431016	+	918.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	10538.0	NR_152168	621427.0	Mm.389742	NR_152168	ENSMUSG00000068601	Gm10244	Anmkrn1	predicted gene 10244	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-44205102-2	chr12	44205002	44205202	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_013760)	TTS (NM_013760)	4966.0	NM_013760	27362.0	Mm.27432	NM_013760	ENSMUSG00000014905	Dnajb9	AA408011|AA673251|AA673481|AW556981|ERdj4|Mdg1|mDj7	DnaJ heat shock protein family (Hsp40) member B9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129986284-1	chr4	129986184	129986384	+	547.0	f1_c57bl6.idr	intron (NM_001199696, intron 1 of 28)	CpG	1206.0	NM_173071	230775.0	Mm.262241	NM_173071	ENSMUSG00000028782	Adgrb2	Bai2	adhesion G protein-coupled receptor B2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-157052121-2	chr2	157052021	157052221	+	837.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164663, intron 3 of 14)	ID4_|SINE|ID	27144.0	NM_001164663	320706.0	Mm.79466	NM_001164663	ENSMUSG00000055485	Soga1	9830001H06Rik|AI426038|D430036N24Rik|Soga	suppressor of glucose, autophagy associated 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-28952190-2	chr13	28952090	28952290	+	734.166687	f1_balb.idr|f1_c57bl6.idr	exon (NM_009238, exon 1 of 1)	exon (NM_009238, exon 1 of 1)	1509.0	NM_009238	20677.0	Mm.240627	NM_009238	ENSMUSG00000076431	Sox4	AA682046|Sox-4	SRY (sex determining region Y)-box 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-49857262-2	chr16	49857162	49857362	+	608.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010581, intron 1 of 9)	intron (NM_010581, intron 1 of 9)	1608.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-78247219-4	chr17	78247108	78247308	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015800, intron 2 of 16)	intron (NM_015800, intron 2 of 16)	46960.0	NM_015800	50766.0	Mm.311912	NM_015800	ENSMUSG00000024074	Crim1	AU015004	cysteine rich transmembrane BMP regulator 1 (chordin like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-130549311-4	chr4	130549219	130549419	+	964.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025998, intron 1 of 6)	(A)n|Simple_repeat|Simple_repeat	24717.0	NM_025998	67149.0	Mm.423029	NM_025998	ENSMUSG00000078532	Nkain1	2610200G18Rik|2810426C15Rik	Na+/K+ transporting ATPase interacting 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-87537542-2	chr6	87537442	87537642	+	879.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-4283.0	NM_001286610	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	-2.18233058068552	-2.15536956715525	-2.16352280018114	-2.04193253143548	-2.18043796738662	-2.15360272754651	-2.16167708693786	-2.16902129354933	-0.683654500252594	0.846597994014493	1
Merged-chr6-119481096-3	chr6	119480998	119481198	+	860.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_133940, exon 1 of 1)	3' UTR (NM_133940, exon 1 of 1)	1430.0	NM_133940	101358.0	Mm.125477	NM_133940	ENSMUSG00000030019	Fbxl14	AW322056|Fbx14l	F-box and leucine-rich repeat protein 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27024789-2	chr2	27024689	27024889	+	745.700012	f1_balb.idr|f1_c57bl6.idr	exon (NM_172659, exon 5 of 10)	exon (NM_172659, exon 5 of 10)	3209.0	NM_172659	227659.0	Mm.41203	NM_172659	ENSMUSG00000036067	Slc2a6	A330096C23|F630103L12Rik|Glut6|Glut9	solute carrier family 2 (facilitated glucose transporter), member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34346730-5	chr17	34346613	34346813	+	867.6000369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2068.0	NM_010381	100504404.0	Mm.15680	NM_010381		H2-Ea-ps	AI323765|E-alpha-f|H-2Ea|H2-Ea|I-Ealpha|Ia-3|Ia3|MHC-H2-Ea	histocompatibility 2, class II antigen E alpha, pseudogene	protein-coding	3.13843944051285	1.60352005212363	2.79981224802564	2.33850995264309	3.09839839618506	3.60013740703361	2.82212691130452	2.83778851719233	0.948731448275204	0.20562001859062	0.69324531183503
Merged-chr7-143037523-4	chr7	143037421	143037621	+	976.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015529, intron 2 of 3)	ORR1D2|LTR|ERVL-MaLR	-15229.0	NM_133655	12520.0	Mm.806	NM_133655	ENSMUSG00000037706	Cd81	Tapa-1|Tapa1|Tspan28	CD81 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-108069795-2	chr3	108069695	108069895	+	730.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORSL-2b|DNA|hAT-Tip100	15607.0	NM_001346665	109674.0	Mm.274335	NM_028779	ENSMUSG00000027889	Ampd2	1200014F01Rik|AI552571|Ampd-2|m4521Dajl	adenosine monophosphate deaminase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167293012-4	chr2	167292907	167293107	+	943.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-52470.0	NM_008968	19223.0	Mm.2339	NM_008968	ENSMUSG00000017969	Ptgis	Cyp8|Cyp8a1|Pgis	prostaglandin I2 (prostacyclin) synthase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-126257290-4	chr4	126257153	126257353	+	765.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144941)	promoter-TSS (NM_144941)	-934.0	NM_001145970	245877.0	Mm.266716	NM_144941	ENSMUSG00000028849	Map7d1	AV028413|BC019977|Mtap7d1|Parcc1|Rprc1|mKIAA1187	MAP7 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-105892617-4	chr3	105892494	105892694	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027025, intron 1 of 6)	intron (NM_027025, intron 1 of 6)	-11827.0	NM_009631	11542.0	Mm.235024	NM_009631	ENSMUSG00000000562	Adora3	A3AR|A3R|AA3R|ARA3|Gpcr2	adenosine A3 receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-86067462-2	chr1	86067362	86067562	+	806.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027357, intron 1 of 24)	intron (NM_027357, intron 1 of 24)	2843.0	NM_027357	70247.0	Mm.280013	NM_027357	ENSMUSG00000026229	Psmd1	2410026J11Rik|P112|S1	proteasome (prosome, macropain) 26S subunit, non-ATPase, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153118400-4	chr2	153118316	153118516	+	751.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001172117, intron 1 of 12)	L1MA4|LINE|L1	9948.0	NM_010407	15162.0	Mm.715	NM_010407	ENSMUSG00000003283	Hck	AI849071|Bmk	hemopoietic cell kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-66113995-2	chr16	66113895	66114095	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17B|LTR|ERVK	298362.0	NM_028572	73569.0	Mm.25670	NM_028572	ENSMUSG00000091243	Vgll3	1700110N18Rik|4832416J22|C80713|Vgl-3|Vito-2	vestigial like family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67181051-4	chr10	67180937	67181137	+	915.2666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207221, intron 2 of 25)	intron (NM_207221, intron 2 of 25)	-4713.0	NM_001242396	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-63903863-4	chr7	63903765	63903965	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021366, intron 1 of 1)	intron (NM_021366, intron 1 of 1)	-12992.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-111643463-4	chr8	111643362	111643562	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011742)	promoter-TSS (NM_011742)	19.0	NM_011742	22640.0	Mm.4184	NM_011742	ENSMUSG00000055835	Zfp1	Fnp-1|Zfp-1|mkr-1	zinc finger protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-90275561-10	chr9	90275465	90275665	+	958.4833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-4796.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	2.21489737196034	2.31951716056752	1.05164823834662	2.76541511696068	0.993612142991852	2.09759544654823	1.72511585258561	1.03239815345471	-1.72822620806854	0.146959629592989	0.597139402897766
Merged-chr11-69067793-2	chr11	69067693	69067893	+	878.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-3016.0	NM_025838	66910.0	Mm.33964	NM_025838	ENSMUSG00000020895	Tmem107	1110004B13Rik|2810049P21Rik	transmembrane protein 107	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-173934636-4	chr1	173934529	173934729	+	918.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302649, intron 5 of 9)	intron (NM_001302649, intron 5 of 9)	7863.0	NM_001302649	15950.0	Mm.463437	NM_008328	ENSMUSG00000039997	Ifi203	Ifi203a|Ifi203b|Mndal	interferon activated gene 203	protein-coding	3.26476583437574	3.03447515641727	1.6880862247792	2.82749737910857	4.00811618942091	4.67069786995573	4.27265022398884	3.9431948621196	2.10586937158118	0.000257016293115575	0.00653322348474719
Merged-chr5-115546963-2	chr5	115546863	115547063	+	630.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_011223, intron 6 of 10)	intron (NM_011223, intron 6 of 10)	-12504.0	NM_007475	11837.0	Mm.5286	NM_007475	ENSMUSG00000067274	Rplp0	36B4|Arbp|L10E	ribosomal protein, large, P0	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-34291143-2	chr19	34291043	34291243	+	805.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_007987, intron 1 of 8)	intron (NM_007987, intron 1 of 8)	484.0	NM_001146708	14102.0	Mm.1626	NM_007987	ENSMUSG00000024778	Fas	AI196731|APO1|APT1|CD95|TNFR6|Tnfrsf6|lpr	Fas (TNF receptor superfamily member 6)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28317221-2	chr17	28317121	28317321	+	657.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001163820, exon 4 of 9)	exon (NM_001163820, exon 4 of 9)	3691.0	NM_001163820	72775.0	Mm.201859	NM_028348	ENSMUSG00000007570	Fance	2810451D06Rik|AI415634|AW209126	Fanconi anemia, complementation group E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65844659-4	chr9	65844549	65844749	+	965.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357872, intron 12 of 13)	intron (NM_001357872, intron 12 of 13)	-17085.0	NM_172536	214812.0	Mm.139231	NM_172536	ENSMUSG00000040524	Zfp609	9830165N24|BC016271|Znf609|mKIAA0295	zinc finger protein 609	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75451550-2	chr11	75451450	75451650	+	815.666687	f1_balb.idr|f1_c57bl6.idr	exon (NM_138950, exon 1 of 10)	exon (NM_138950, exon 1 of 10)	3167.0	NM_138950	192652.0	Mm.340378	NM_138950	ENSMUSG00000045374	Wdr81	BC054822|Gm883|mFLJ00182|nur5	WD repeat domain 81	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-125503124-2	chr8	125503024	125503224	+	613.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357372, intron 2 of 21)	intron (NM_001357372, intron 2 of 21)	-10291.0	NM_001081337	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	1.95919938338129	1.14778748395764	1.57185882902044	2.35183950629114	1.46477753599352	1.97576367743225	1.37870374719995	2.71350477762654	0.436093101614818	0.688256260765859	0.996533206832645
Merged-chr5-125333216-4	chr5	125333114	125333314	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205083, intron 1 of 10)	intron (NM_001205083, intron 1 of 10)	7880.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-46184401-2	chr7	46184301	46184501	+	614.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-4368.0	NM_011510	20927.0	Mm.259076	NM_011510	ENSMUSG00000040136	Abcc8	D930031B21Rik|SUR1|Sur	ATP-binding cassette, sub-family C (CFTR/MRP), member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-22310031-2	chr3	22309931	22310131	+	597.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	58661.0	NR_004439	19784.0		NR_004439		Rprl2	RPRH3|Rmrp3	ribonuclease P RNA-like 2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-144607242-3	chr3	144607132	144607332	+	893.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER102b|DNA|hAT-Charlie	36805.0	NM_053102	93684.0	Mm.29812	NM_053102	ENSMUSG00000037072	Selenof	9430015P09Rik|Sep15	selenoprotein F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-29944139-4	chr16	29944022	29944222	+	967.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35002.0	NR_037689	328657.0	Mm.425982	NM_001033403		Gm1968	-	predicted gene 1968	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-46430426-2	chr18	46430324	46430524	+	639.5	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	35392.0	NR_045438	72076.0	Mm.82766	NM_028086		Mospd4	2010013H21Rik	motile sperm domain containing 4	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-30557208-1	chr14	30557108	30557308	+	606.0	f1_c57bl6.idr	intron (NM_009388, intron 1 of 13)	intron (NM_009388, intron 1 of 13)	8077.0	NM_009388	21881.0	Mm.290692	NM_009388	ENSMUSG00000021957	Tkt	p68	transketolase	protein-coding	0.78333435354532	0.918926312870638	0.875433013219832	0.841308526633168	0.414299399942699	0.436219668306605	0.429091623644333	0.847309536425311	-2.01168378933006	0.246646654699008	1
Merged-chr13-34572621-2	chr13	34572521	34572721	+	627.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	80060.0	NM_025831	66895.0	Mm.28943	NM_025831	ENSMUSG00000021411	Pxdc1	1300014I06Rik	PX domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-164315468-2	chr1	164315368	164315568	+	701.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178071, intron 3 of 9)	B3|SINE|B2	7796.0	NM_138314	171567.0	Mm.219428	NM_138314	ENSMUSG00000026575	Nme7	D530024H21Rik|Nm23-M7|Nm23-r7	NME/NM23 family member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-52699221-4	chr6	52699109	52699309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14520.0	NM_025816	52440.0	Mm.389757	NM_025816	ENSMUSG00000004535	Tax1bp1	1200003J11Rik|1700069J21Rik|AA930106|D6Ertd404e|D6Ertd772e|T6bp|TXBP151	Tax1 (human T cell leukemia virus type I) binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59049480-2	chr15	59049380	59049580	+	577.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144800, intron 3 of 14)	intron (NM_144800, intron 3 of 14)	32546.0	NM_001146180	211401.0	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-96700261-4	chr15	96700137	96700337	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175121)	promoter-TSS (NM_175121)	-509.0	NM_175121	67760.0	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5777539-4	chr19	5777426	5777626	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	-6107.0	NR_155264	78891.0	Mm.276063	NM_023912	ENSMUSG00000024941	Scyl1	2810011O19Rik|C85140|Ntkl|mdf|mfd|p105	SCY1-like 1 (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72154169-4	chr6	72154045	72154245	+	955.991699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011375, exon 7 of 7)	3' UTR (NM_011375, exon 7 of 7)	-30948.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-181213160-3	chr2	181213059	181213259	+	723.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011481)	promoter-TSS (NM_011481)	12.0	NM_011481	20811.0	Mm.4752	NM_011481	ENSMUSG00000027579	Srms	A230069J08Rik|srm	src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-9750005-4	chr13	9749895	9750095	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347474, intron 1 of 14)	intron (NM_001347474, intron 1 of 14)	13815.0	NM_001347471	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-43642807-4	chr7	43642707	43642907	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028236, intron 4 of 5)	RLTR28|LTR|ERVL	8068.0	NM_028236	72431.0	Mm.158821	NM_028236	ENSMUSG00000030472	Ceacam18	2010110O04Rik	carcinoembryonic antigen-related cell adhesion molecule 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-83602858-1	chr7	83602758	83602958	+	1000.0	f1_c57bl6.idr	intron (NM_177695, intron 9 of 22)	B4A|SINE|B4	17927.0	NM_177695	233424.0	Mm.486619	NM_177695	ENSMUSG00000038540	Tmc3	9030203A06	transmembrane channel-like gene family 3	protein-coding	-1.56355737717652	-1.81244775989375	-1.82128546162293	-1.82854501295842	-1.83962066705452	-1.81053259306168	-1.81928479966835	-1.82724555674025	-1.28500227969968	0.715751224811686	1
Merged-chr1-172455505-4	chr1	172455422	172455622	+	882.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19838.0	NM_029612	98365.0	Mm.150050	NM_029612	ENSMUSG00000026548	Slamf9	2310026I04Rik|AI462096|CD2F-10|CD84-H1|Cd2f10|SF2001	SLAM family member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-66089212-2	chr9	66089112	66089312	+	704.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_019727, intron 13 of 14)	intron (NM_019727, intron 13 of 14)	-19481.0	NM_001025612	382083.0	Mm.477103	NM_001025612	ENSMUSG00000039452	Snx22	Gm1120	sorting nexin 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-75847526-2	chr14	75847426	75847626	+	641.333313	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028481)	promoter-TSS (NR_028481)	-397.0	NR_028481	100303751.0	Mm.484707	NR_028481	ENSMUSG00000065147	Snora31	MBI-161	small nucleolar RNA, H/ACA box 31	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-38427586-4	chr15	38427513	38427713	+	997.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20C2_MM|LTR|ERVK	62934.0	NR_105916	102465574.0		NR_105916	ENSMUSG00000099110	Mir6951	Gm27765|mmu-mir-6951	microRNA 6951	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-20648613-4	chr18	20648512	20648712	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155534, intron 1 of 2)	MTE2a|LTR|ERVL-MaLR	-16638.0	NM_013697	22139.0	Mm.2108	NM_013697	ENSMUSG00000061808	Ttr	AA408768|AI787086|D17860|prealbumin	transthyretin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-10887641-4	chr15	10887534	10887734	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58583.0	NR_040357	100502601.0	Mm.399434	NR_040357		Gm19276	-	predicted gene, 19276	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-103520036-2	chr15	103519936	103520136	+	656.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001285890, exon 2 of 15)	exon (NM_001285890, exon 2 of 15)	5059.0	NM_001285890	18574.0	Mm.390792	NM_008800	ENSMUSG00000022489	Pde1b	Pde1b1	phosphodiesterase 1B, Ca2+-calmodulin dependent	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-98812439-4	chr13	98812349	98812549	+	941.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172591, intron 1 of 25)	L1MB7|LINE|L1	3000.0	NM_172591	218503.0	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-66447626-2	chr3	66447526	66447726	+	919.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-150789.0	NM_145820	72789.0	Mm.443526	NM_028357	ENSMUSG00000027831	Veph1	2810471M23Rik|Veph	ventricular zone expressed PH domain-containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-67348750-4	chr17	67348635	67348835	+	867.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	MER5A|DNA|hAT-Charlie	5724.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-99257895-2	chr5	99257766	99257966	+	707.700012	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4939.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	3.08440587149712	2.67371425364085	2.82164307435961	2.37928059229462	3.34289926812234	2.82210313515663	2.73037283054673	2.75787313960373	0.333858876760103	0.625014270387112	0.980912176761026
Merged-chr3-8685401-4	chr3	8685364	8685564	+	991.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18426.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-116457177-4	chr7	116457087	116457287	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L4_A_Mam|LINE|RTE-X	-13729.0	NM_011083	18704.0	Mm.3810	NM_011083	ENSMUSG00000030660	Pik3c2a	Cpk-m|PI3KC2	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127745462-4	chr7	127745343	127745543	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1332.0	NM_172748	233902.0	Mm.259353	NM_172748	ENSMUSG00000030811	Fbxl19	6030430O11|BC059812|Fbl19	F-box and leucine-rich repeat protein 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-84175116-2	chr12	84175016	84175216	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163501, intron 1 of 12)	intron (NM_001163501, intron 1 of 12)	18899.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-170160341-4	chr2	170160240	170160440	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17665.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	4.90282032076284	4.85831054726988	4.91696187416655	4.2896374291523	4.81544151382913	4.89050899234767	4.74349356354788	4.25383189719893	-0.0858281117436109	0.810559678323414	0.998431161219273
Merged-chr6-114854309-3	chr6	114854193	114854393	+	854.805542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253718, intron 19 of 19)	intron (NM_001253718, intron 19 of 19)	67528.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-31533429-2	chr15	31533329	31533529	+	743.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2392.0	NM_172606	223455.0	Mm.272185	NM_172606	ENSMUSG00000039100	March6	3830408G03|F830029L24Rik|mKIAA0597	membrane-associated ring finger (C3HC4) 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-16346377-2	chr19	16346277	16346477	+	900.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008139, intron 5 of 6)	intron (NM_008139, intron 5 of 6)	-31373.0	NR_105832	102465218.0		NR_105832	ENSMUSG00000098718	Mir496b	Gm28028|mmu-mir-496b	microRNA 496b	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-4097451-2	chr11	4097351	4097551	+	686.333313	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_144520, exon 12 of 12)	3' UTR (NM_144520, exon 12 of 12)	-2020.0	NM_026443	67900.0	Mm.41719	NM_026443	ENSMUSG00000004748	Mtfp1	1700020C11Rik|2610507A21Rik|AV005788|Mtp18	mitochondrial fission process 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6128166-4	chr19	6128025	6128225	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026912)	promoter-TSS (NM_026912)	90.0	NM_026912	69024.0	Mm.329629	NM_026912	ENSMUSG00000024787	Snx15	1500032B08Rik|E130013C21Rik	sorting nexin 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-26153036-1	chr1	26152936	26153136	+	672.0	f1_balb.idr	Intergenic	L1_Mus2|LINE|L1	-323329.0	NM_175642	210933.0	Mm.336569	NM_175642	ENSMUSG00000033569	Adgrb3	A830096D10Rik|Bai3	adhesion G protein-coupled receptor B3	protein-coding	0.823253310246286	0.925653439211859	2.53007969717718	0.868484602669512	0.83022050285177	1.69011190918749	2.62944696291961	2.60760983210999	1.34076605271031	0.580751548532542	0.966599221005409
Merged-chr1-79670972-2	chr1	79670872	79671072	+	910.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_183027, intron 1 of 4)	intron (NM_183027, intron 1 of 4)	1000.0	NM_183027	252903.0	Mm.32409	NM_183027	ENSMUSG00000054702	Ap1s3	1190009B22|Jr2|[s]3A	adaptor-related protein complex AP-1, sigma 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-84030745-1	chr12	84030645	84030845	+	574.0	f0_balb.idr	Intergenic	Intergenic	-7634.0	NM_134247	171282.0	Mm.482217	NM_134247	ENSMUSG00000052392	Acot4	B430212I04Rik|PTE-Ib|Pte1b|Pte2b	acyl-CoA thioesterase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-85634635-4	chr15	85634533	85634733	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-52812.0	NM_009528	22422.0	Mm.306946	NM_009528	ENSMUSG00000022382	Wnt7b	Wnt-7b	wingless-type MMTV integration site family, member 7B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-147482857-2	chr4	147482757	147482957	+	575.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039209, intron 1 of 2)	intron (NM_001039209, intron 1 of 2)	-70420.0	NM_001014397	433804.0	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154	zinc finger protein 985	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-120206179-4	chr7	120206061	120206261	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026458, intron 1 of 30)	intron (NM_026458, intron 1 of 30)	2197.0	NM_026458	67928.0	Mm.158178	NM_026458	ENSMUSG00000062017	Abca14	1700110B15Rik|4930539G24Rik	ATP-binding cassette, sub-family A (ABC1), member 14	protein-coding	3.34638053818435	2.97126135866131	2.86575657785457	1.5009568911248	2.53403313459198	2.99425244809028	4.23308312347848	3.00550738234768	0.875068091877013	0.253698411184389	0.751694505775946
Merged-chr18-9487575-3	chr18	9487482	9487682	+	870.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37428.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-83918554-2	chr17	83918454	83918654	+	878.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64136.0	NR_155491	320021.0	Mm.379475	NR_155490		C430042M11Rik	-	RIKEN cDNA C430042M11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-70661379-3	chr16	70661263	70661463	+	752.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	44938.0	NR_040474	52645.0	Mm.188475	NR_040474		D16Ertd519e	-	DNA segment, Chr 16, ERATO Doi 519, expressed	ncRNA	0.0880896720249232	0.106547828212351	0.100512737228876	0.733048846601043	0.667785464235139	0.107906768833104	0.101844759633514	0.642737676102342	0.749000148534997	0.730876341411182	1
Merged-chr12-8324574-2	chr12	8324474	8324674	+	582.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021429, intron 4 of 6)	intron (NM_021429, intron 4 of 6)	11141.0	NM_021429	58240.0	Mm.309954	NM_021429	ENSMUSG00000020605	Hs1bp3	-	HCLS1 binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91352889-2	chr16	91352789	91352989	+	766.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19894.0	NM_010509	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-40967104-4	chr14	40966966	40967166	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145928)	promoter-TSS (NM_145928)	-170.0	NM_145928	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-18056114-2	chr2	18056014	18056214	+	852.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_149308, intron 1 of 9)	intron (NR_149308, intron 1 of 9)	386.0	NR_149308	17354.0	Mm.209175	NM_010804	ENSMUSG00000026743	Mllt10	Af10|B130021D15Rik|D630001B22Rik|mKIAA4140	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24163780-4	chr17	24163679	24163879	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172935)	promoter-TSS (NM_172935)	-46.0	NM_172935	245847.0	Mm.87319	NM_172935	ENSMUSG00000036820	Amdhd2	5730457F11Rik	amidohydrolase domain containing 2	protein-coding	7.40379131097401	7.85835344855021	7.99783822765239	7.90584115800614	7.5291276267654	7.55904814403776	7.2095799939145	7.86751869808482	-0.252932222898945	0.138978019211045	0.58234864068479
Merged-chr1-161036583-2	chr1	161036443	161036643	+	864.916626	f1_balb.idr|f1_c57bl6.idr	intron (NR_153815, intron 4 of 8)	intron (NR_153815, intron 4 of 8)	-1549.0	NR_028543	100217446.0		NR_028543	ENSMUSG00000064968	Snord47	MBII-96	small nucleolar RNA, C/D box 47	snoRNA	0.321028874789189	0.353949133719033	0.557914928459248	0.53594530773085	1.63548835031484	0.356311355865394	0.564125099002045	0.977567553548719	3.03869033251887	0.0855254155611719	0.449089916520426
Merged-chr4-43558832-4	chr4	43558755	43558955	+	903.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011602, intron 1 of 56)	intron (NM_011602, intron 1 of 56)	3728.0	NM_011602	21894.0	Mm.208601	NM_011602	ENSMUSG00000028465	Tln1	Tln	talin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-73559325-4	chr7	73559215	73559415	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_037569)	promoter-TSS (NR_037569)	-920.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-51328726-4	chr11	51328629	51328829	+	935.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153393, intron 2 of 28)	intron (NM_153393, intron 2 of 28)	38809.0	NM_153393	237759.0	Mm.154093	NM_153393	ENSMUSG00000063564	Col23a1	2810458L13Rik|AI429655	collagen, type XXIII, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114793124-4	chr11	114793024	114793224	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028055, intron 2 of 2)	intron (NM_028055, intron 2 of 2)	2768.0	NM_028055	72014.0	Mm.38347	NM_028055	ENSMUSG00000000202	Btbd17	1500005I02Rik|Tango10a	BTB (POZ) domain containing 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132088983-2	chr4	132088883	132089083	+	699.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13670.0	NM_001128607	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-113659851-4	chr6	113659731	113659931	+	963.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 2 of 11)	intron (NM_001113553, intron 2 of 11)	21364.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-174036256-4	chr1	174036132	174036332	+	876.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4477.0	NM_172648	226695.0	Mm.425061	NM_172648	ENSMUSG00000054203	Ifi205	D3|D3cDNA|Ifi205a	interferon activated gene 205	protein-coding	1.69154540198724	1.75338891789383	2.40774653347633	1.8969979325621	1.81421135551215	1.15551058221602	1.70879129478454	1.50711183383093	-1.20635438056289	0.255122993407643	0.753346736474035
Merged-chr18-53743865-4	chr18	53743775	53743975	+	927.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178686, intron 2 of 20)	intron (NM_178686, intron 2 of 20)	672.0	NM_178686	225523.0	Mm.193678	NM_178686	ENSMUSG00000048799	Cep120	A230075C01|AU016693|Ccdc100	centrosomal protein 120	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-4155359-2	chr12	4155259	4155459	+	547.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159537, intron 2 of 21)	MER45B|DNA|hAT-Tip100	21206.0	NM_138305	104111.0	Mm.489807	NM_138305	ENSMUSG00000020654	Adcy3	AC3|mKIAA0511	adenylate cyclase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-119894839-4	chr9	119894766	119894966	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026236)	promoter-TSS (NM_026236)	-29.0	NM_026236	67561.0	Mm.104789	NM_026236	ENSMUSG00000032512	Wdr48	8430408H12Rik|Uaf1|mKIAA1449	WD repeat domain 48	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-40401344-4	chr19	40401145	40401345	+	976.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034962, intron 2 of 22)	intron (NM_001034962, intron 2 of 22)	1065.0	NM_001034964	20411.0	Mm.210815	NM_009166	ENSMUSG00000025006	Sorbs1	2310065E01Rik|9530001P15Rik|CAP|SH3P12|Sh3d5|mKIAA1296	sorbin and SH3 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-65610171-2	chr17	65610071	65610271	+	707.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355402, intron 1 of 6)	B3|SINE|B2	3384.0	NM_001355402	30960.0	Mm.266767	NM_013933	ENSMUSG00000024091	Vapa	33kDa|VAP33	vesicle-associated membrane protein, associated protein A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122768127-2	chr5	122768027	122768227	+	887.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199676, intron 1 of 16)	intron (NM_001199676, intron 1 of 16)	11283.0	NM_001199676	207565.0	Mm.289237	NM_145358	ENSMUSG00000029471	Camkk2	6330570N16Rik|AW061083|mKIAA0787	calcium/calmodulin-dependent protein kinase kinase 2, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-88130697-2	chr7	88130597	88130797	+	685.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001143834, exon 11 of 11)	exon (NM_001143834, exon 11 of 11)	-147388.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-157049128-4	chr2	157049023	157049223	+	978.2708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164663, intron 3 of 14)	intron (NM_001164663, intron 3 of 14)	30142.0	NM_001164663	320706.0	Mm.79466	NM_001164663	ENSMUSG00000055485	Soga1	9830001H06Rik|AI426038|D430036N24Rik|Soga	suppressor of glucose, autophagy associated 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-33146149-4	chr12	33146090	33146290	+	809.616699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015602, intron 1 of 5)	intron (NR_015602, intron 1 of 5)	1396.0	NR_015602	320046.0	Mm.208337	NR_015602	ENSMUSG00000052125	F730043M19Rik	-	RIKEN cDNA F730043M19 gene	ncRNA	2.48799573685467	2.54610577690545	2.96353321776654	2.51248074606486	2.83693477248053	2.68908900021323	2.01713597297674	2.52498751229948	-0.176068793725148	0.814631057499846	0.998431161219273
Merged-chr2-118487167-4	chr2	118487040	118487240	+	674.125	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7444.0	NM_009273	20813.0	Mm.363404	NM_009273	ENSMUSG00000009549	Srp14	14kDa|AW536328	signal recognition particle 14	protein-coding	2.8629522421956	2.51721097707747	3.39453424411555	2.92802829470554	2.88628853731432	3.13572753961031	2.10410825889028	2.637322674393	-0.412360808399716	0.557828537369144	0.960321604678676
Merged-chr10-117412244-2	chr10	117412144	117412344	+	935.1666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A0|LTR|ERVL-MaLR	35191.0	NR_152734	102634600.0	Mm.399106	NR_152734	ENSMUSG00000112344	Gm32141	-	predicted gene, 32141	ncRNA	-0.971846193215455	-1.32125498911739	-1.1746473638158	-1.33937805479113	-1.35087743162387	-1.31909880171484	-1.32895245901187	-1.3379150641624	-2.21753722681566	0.513113539718258	1
Merged-chr2-158076915-4	chr2	158076827	158077027	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001291136, exon 6 of 6)	3' UTR (NM_001291136, exon 6 of 6)	14870.0	NR_040609	72340.0	Mm.443395	NR_040609	ENSMUSG00000100860	2010009K17Rik	-	RIKEN cDNA 2010009K17 gene	ncRNA	3.57607339519028	4.0506333510788	3.59620686135997	4.1187351713768	3.5451324032381	2.35506849324141	3.06156188074158	2.70610335738191	-1.3125254883842	0.0230797654685704	0.198076556575042
Merged-chr6-30048019-4	chr6	30047879	30048079	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010938)	promoter-TSS (NM_010938)	-9.0	NM_001164228	18181.0	Mm.259258	NM_010938	ENSMUSG00000058440	Nrf1	C87038|D6Ertd415e	nuclear respiratory factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-90134228-7	chr7	90134128	90134328	+	859.654785	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360867, intron 1 of 19)	B1_Mus2|SINE|Alu	4015.0	NM_001252520	233489.0	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	-1.56355737717652	-1.81244775989375	-1.82128546162293	-1.82854501295842	-1.83962066705452	-1.81053259306168	-1.81928479966835	-1.82724555674025	-1.28500227969968	0.715751224811686	1
Merged-chr18-24185754-2	chr18	24185654	24185854	+	555.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-19590.0	NM_013814	14423.0	Mm.30249	NM_013814	ENSMUSG00000000420	Galnt1	-	polypeptide N-acetylgalactosaminyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-81212407-4	chr7	81212287	81212487	+	969.224976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1417.0	NM_008803	18584.0	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-11239732-3	chr2	11239632	11239832	+	975.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008859, intron 4 of 17)	intron (NM_008859, intron 4 of 17)	67350.0	NM_008859	18761.0	Mm.329993	NM_008859	ENSMUSG00000026778	Prkcq	A130035A12Rik|AW494342|PKC-0|PKC-theta|PKCtheta|Pkcq	protein kinase C, theta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-92707819-2	chr16	92707719	92707919	+	624.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111022, intron 2 of 6)	intron (NM_001111022, intron 2 of 6)	-10490.0	NM_009821	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-98147149-2	chr3	98147049	98147249	+	587.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_010928, exon 34 of 34)	exon (NM_010928, exon 34 of 34)	-13485.0	NM_027665	71078.0	Mm.50711	NM_027665	ENSMUSG00000043468	Adam30	4933424D07Rik|svph4	a disintegrin and metallopeptidase domain 30	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-87716529-4	chr16	87716430	87716630	+	983.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007520, intron 2 of 4)	intron (NM_007520, intron 2 of 4)	17576.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-31042906-2	chr17	31042806	31043006	+	732.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14788.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-47649267-4	chr14	47649190	47649390	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347524)	promoter-TSS (NM_001347524)	-21.0	NM_001347527	16709.0	Mm.3110	NM_008477	ENSMUSG00000021843	Ktn1	-	kinectin 1	protein-coding	2.00731245771492	3.18160945885264	2.84785791304174	1.9658172920697	1.87763208618063	2.67726483519316	2.68836801675719	1.32194979420107	-0.713168221691404	0.435469706413561	0.907812846788469
Merged-chr1-91755332-3	chr1	91755195	91755395	+	608.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46166.0	NM_007855	13345.0	Mm.9474	NM_007855	ENSMUSG00000007805	Twist2	Dermo1|bHLHa39	twist basic helix-loop-helix transcription factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-118766893-2	chr14	118766793	118766993	+	758.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20978.0	NM_001160098	58187.0	Mm.390755	NM_021386	ENSMUSG00000022132	Cldn10	6720456I16Rik|Cldn10a|Cldn10b|D14Ertd728e	claudin 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-54082718-4	chr6	54082616	54082816	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163640, intron 1 of 12)	intron (NM_001163640, intron 1 of 12)	42784.0	NM_001163640	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	4.89092657643309	4.36114790102423	4.55682331694258	4.57729870063984	4.95467788866795	4.25510216251338	4.6860555056124	4.91326978755438	0.149883855448479	0.679027707820016	0.99525161242239
Merged-chr8-120323225-4	chr8	120323115	120323315	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-94985.0	NR_110496	434353.0	Mm.411793	NR_110496	ENSMUSG00000097960	A330074K22Rik	-	RIKEN cDNA A330074K22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-72411652-3	chr11	72411590	72411790	+	918.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177776)	promoter-TSS (NM_177776)	23.0	NM_177776	276829.0	Mm.46732	NM_177776	ENSMUSG00000045667	Smtnl2	D130058I21Rik	smoothelin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-85735427-3	chr15	85735340	85735540	+	867.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113418)	promoter-TSS (NM_001113418)	-124.0	NM_001113418	19013.0	Mm.212789	NM_011144	ENSMUSG00000022383	Ppara	4933429D07Rik|AW742785|Nr1c1|PPAR-alpha|PPARalpha|Ppar	peroxisome proliferator activated receptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-99416144-2	chr12	99416044	99416244	+	745.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_183186, intron 1 of 5)	intron (NM_183186, intron 1 of 5)	33930.0	NM_183186	71375.0	Mm.341972	NM_183186	ENSMUSG00000033713	Foxn3	5430426H20Rik|AA589593|AW556347|Ches1|Ches1l|HTLFL1	forkhead box N3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-26806322-3	chr10	26806221	26806421	+	701.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176837, intron 1 of 14)	intron (NM_176837, intron 1 of 14)	33809.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-79712502-5	chr10	79712363	79712563	+	753.56665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009768)	TTS (NM_009768)	-4171.0	NM_008226	15166.0	Mm.12956	NM_008226	ENSMUSG00000020331	Hcn2	BCNG2|HAC1|trls	hyperpolarization-activated, cyclic nucleotide-gated K+ 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85379432-4	chr12	85379335	85379535	+	958.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TTTTG)n|Simple_repeat|Simple_repeat	-4718.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-120463243-4	chr6	120463123	120463323	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008359)	promoter-TSS (NM_008359)	26.0	NM_008359	16172.0	Mm.4481	NM_008359	ENSMUSG00000002897	Il17ra	AW538159|Cdw217|Il17r|VDw217	interleukin 17 receptor A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-45516655-2	chr17	45516602	45516802	+	836.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358000, intron 10 of 20)	intron (NM_001358000, intron 10 of 20)	-6732.0	NM_013688	21645.0	Mm.491193	NM_013688	ENSMUSG00000023949	Tcte1	D17Sil1|Tcte-1	t-complex-associated testis expressed 1	protein-coding	2.40953262985157	2.58273074242687	2.49912076996432	2.19433493946674	2.42861682614368	2.4798185036013	2.71987668168903	2.06248429416864	0.0377047217926259	0.961557225314115	0.998431161219273
Merged-chr14-46883617-4	chr14	46883466	46883666	+	960.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037221, intron 1 of 12)	CpG	601.0	NM_001037221	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	-0.716103810256239	-0.512937885007076	-0.709401218148495	-0.711924321015215	-0.570024265668853	-0.705385622006071	-0.708679199111842	-0.0780881191651885	2.25239736861609	0.407566123327128	1
Merged-chr15-81937246-2	chr15	81937146	81937346	+	706.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145473, intron 1 of 3)	intron (NM_145473, intron 1 of 3)	487.0	NM_145473	105859.0	Mm.22524	NM_145473	ENSMUSG00000042109	Csdc2	AI415250|AI481750|Pippin	cold shock domain containing C2, RNA binding	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95891620-2	chr3	95891519	95891719	+	689.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153513, intron 1 of 5)	intron (NM_153513, intron 1 of 5)	386.0	NM_153513	229600.0	Mm.89556	NM_153513	ENSMUSG00000038543	BC028528	L259	cDNA sequence BC028528	protein-coding	-0.503792992628731	-0.376005327276512	-0.87008328719357	-0.872340093189806	-0.875522084709624	-0.861335472410615	-0.869437378796228	-0.871946133530848	-2.99496329377639	0.319200436281031	1
Merged-chr18-75222365-2	chr18	75222265	75222465	+	626.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027727, intron 14 of 16)	intron (NM_027727, intron 14 of 16)	74952.0	NR_045394	100503117.0	Mm.250517	NR_045393	ENSMUSG00000102047	2010010A06Rik	5033420E22Rik	RIKEN cDNA 2010010A06 gene	ncRNA	-1.06143507733505	-1.04162019955508	-1.05291486968025	-1.05819092327156	-0.791893878288663	-1.03917259742211	-0.595621597270265	-1.05784875621095	2.7531441000867	0.384928181925071	1
Merged-chr12-4450188-3	chr12	4450104	4450304	+	786.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010881, intron 1 of 22)	intron (NM_010881, intron 1 of 22)	26978.0	NM_010881	17977.0	Mm.301039	NM_010881	ENSMUSG00000020647	Ncoa1	KAT13A|NCoA-1|NRC-1|SRC-1|SRC-a|SRC1|bHLHe74|mNRC-1	nuclear receptor coactivator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-110660366-1	chr9	110660266	110660466	+	558.0	f0_c57.idr	intron (NM_028312, intron 1 of 6)	intron (NM_028312, intron 1 of 6)	3863.0	NM_028312	72654.0	Mm.249115	NM_028312	ENSMUSG00000019659	Ccdc12	2700094L05Rik|C76605	coiled-coil domain containing 12	protein-coding	0.0920822468639734	-0.049312923318961	-0.0559947372099708	1.03206281318006	0.0968224585562079	-0.0478143678964905	-0.0545161957105428	0.283238445037951	-1.87173452291466	0.370360069660256	1
Merged-chr15-79349069-2	chr15	79348969	79349169	+	781.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001304832, intron 1 of 2)	intron (NM_001304832, intron 1 of 2)	667.0	NM_001304832	17133.0	Mm.86646	NM_010755	ENSMUSG00000042622	Maff	-	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein F (avian)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-92638343-4	chr7	92638244	92638444	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1202.0	NM_028665	73845.0	Mm.73248	NM_028665	ENSMUSG00000041343	Ankrd42	4931426M20|4933417L02Rik|Ikbn	ankyrin repeat domain 42	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-61046528-4	chr14	61046433	61046633	+	926.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_013869, exon 1 of 10)	5' UTR (NM_013869, exon 1 of 10)	322.0	NM_013869	29820.0	Mm.281356	NM_013869	ENSMUSG00000060548	Tnfrsf19	AL023044|AW123854|TAJ|TAJ-ALPHA|TRADE|Troy	tumor necrosis factor receptor superfamily, member 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-67177959-4	chr15	67177882	67178082	+	921.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1100.0	NM_009177	20442.0	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-40663708-2	chr17	40663608	40663808	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45-int|LTR|ERVK	31633.0	NM_001251916	100126766.0	Mm.471591	NM_001251916	ENSMUSG00000093957	Esp3	Gm21945	exocrine gland secreted peptide 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-21408557-4	chr13	21408486	21408686	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5831.0	NM_023685	72739.0	Mm.296071	NM_023685	ENSMUSG00000021327	Zkscan3	2810435N07Rik|AA408594|AI132359|Skz1|Zf47|Zfp-47|Zfp306|Zfp307|mszf35	zinc finger with KRAB and SCAN domains 3	protein-coding	5.92001901512467	6.53499681105358	6.36415845603697	6.01016365134058	6.64615210085344	7.03403774051859	7.07319495671531	6.91808934323193	0.752690045043741	0.000294793015703906	0.00726765740222356
Merged-chr1-55529132-6	chr1	55529035	55529235	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114663, intron 1 of 5)	intron (NM_001114663, intron 1 of 5)	123189.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-96483585-1	chr7	96483485	96483685	+	853.0	f1_balb.idr	intron (NM_011858, intron 3 of 32)	MLT1J|LTR|ERVL-MaLR	-141621.0	NR_046043	670727.0	Mm.421352	NR_046043	ENSMUSG00000085751	Gm15412	-	predicted gene 15412	ncRNA	2.05178083324571	1.75480393096593	1.70727853595544	2.15610783208451	1.86383534363757	1.9279931173416	2.32505249770031	2.06383387329364	0.350882183547624	0.705485804634713	0.998431161219273
Merged-chr11-111096807-4	chr11	111096718	111096918	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30654.0	NM_008425	16518.0	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding	4.01228218997804	4.7154164221628	3.65229568045674	4.45657847644753	4.71153326563579	3.50550431851445	3.26342729685115	4.60168435387497	-0.107601495958433	0.829404284258422	0.998431161219273
Merged-chr5-36710407-3	chr5	36710247	36710447	+	672.472229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14326.0	NM_001081232	320661.0	Mm.26480	NM_177221	ENSMUSG00000029190	D5Ertd579e	9030221A05Rik|A930018H20Rik|Kiaa0232	DNA segment, Chr 5, ERATO Doi 579, expressed	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-59779440-2	chr13	59779340	59779540	+	961.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153538, intron 26 of 27)	intron (NM_153538, intron 26 of 27)	9474.0	NR_015349	13996.0	Mm.490435	NR_015349		Etohd2	AW491659	ethanol decreased 2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-3723973-1	chr16	3723873	3724073	+	558.0	f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-5849.0	NM_001161791	54483.0	Mm.143718	NM_019453	ENSMUSG00000022534	Mefv	FMF|TRIM20|pyrin	Mediterranean fever	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-8624757-4	chr11	8624667	8624867	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 1 of 30)	CpG	39768.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-46132146-2	chr17	46132046	46132246	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029338, intron 4 of 4)	intron (NM_029338, intron 4 of 4)	12052.0	NM_029338	75564.0	Mm.17993	NM_029338	ENSMUSG00000023966	Rsph9	1700027N10Rik	radial spoke head 9 homolog (Chlamydomonas)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-133457001-1	chr2	133456901	133457101	+	617.0	f0_balb.idr	Intergenic	Intergenic	-95158.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52030690-2	chr13	52030590	52030790	+	863.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66051.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-60176146-5	chr2	60175945	60176145	+	885.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33891.0	NM_020575	57438.0	Mm.260635	NM_020575	ENSMUSG00000026977	March7	Axo|Axot|Gtrgeo17	membrane-associated ring finger (C3HC4) 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-20446037-4	chr11	20445936	20446136	+	848.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-97217.0	NM_021372	58172.0	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	0.0791124590125852	0.141383726331316	-0.0456534685880743	0.546941590455717	0.0830334743369093	-0.0399863394027438	-0.0446354165686338	0.358138230269947	-0.832605171687815	0.684681067630082	1
Merged-chr11-51812321-2	chr11	51812221	51812421	+	999.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	45160.0	NM_199299	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-19986891-4	chr14	19986817	19987017	+	974.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9668.0	NM_001285909	14702.0	Mm.41737	NM_010315	ENSMUSG00000043004	Gng2	-	guanine nucleotide binding protein (G protein), gamma 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-16527411-4	chr16	16527306	16527506	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001301818)	promoter-TSS (NM_001301818)	5.0	NM_001301818	224014.0	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-66825586-1	chr15	66825486	66825686	+	740.333313	f0_balb.idr	intron (NM_009192, intron 1 of 8)	intron (NM_009192, intron 1 of 8)	6243.0	NM_001029841	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-81518502-4	chr17	81518400	81518600	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 2 of 8)	intron (NR_104580, intron 2 of 8)	219887.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-24255642-2	chr7	24255542	24255742	+	641.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_018791, intron 1 of 3)	intron (NM_018791, intron 1 of 3)	848.0	NM_018791	54678.0	Mm.468052	NM_018791	ENSMUSG00000030486	Zfp108	-	zinc finger protein 108	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-24697077-3	chr13	24696979	24697179	+	914.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080381, intron 13 of 14)	UCON28c|Unknown|Unknown	58431.0	NM_029679	193385.0	Mm.217319	NM_029679	ENSMUSG00000036006	Ripor2	Fam65b	RHO family interacting cell polarization regulator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-57725099-2	chr19	57724999	57725199	+	601.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_181415, intron 19 of 28)	RMER1B|Other|Other	114065.0	NM_181415	226255.0	Mm.245340	NM_181415	ENSMUSG00000054843	Atrnl1	AI504415|AW555641|Alp|Atrnl|Atrnlp	attractin like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115633511-2	chr5	115633411	115633611	+	713.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_198163, intron 1 of 5)	intron (NM_198163, intron 1 of 5)	1524.0	NM_198163	77407.0	Mm.27553	NM_198163	ENSMUSG00000029518	Rab35	9530019H02Rik|AU040256|H-ray|RAB1C|RAY	RAB35, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-116504846-1	chr7	116504746	116504946	+	855.0	f0_balb.idr	intron (NM_001130479, intron 1 of 13)	intron (NM_001130479, intron 1 of 13)	477.0	NM_001360375	53322.0	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-89551992-2	chr1	89551892	89552092	+	559.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037136, intron 1 of 16)	intron (NM_001037136, intron 1 of 16)	97181.0	NM_001037136	347722.0	Mm.291135	NM_178119	ENSMUSG00000055013	Agap1	Centg2|Ggap1|R75364|mKIAA1099	ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-140855836-2	chr7	140855736	140855936	+	911.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_018742, intron 1 of 3)	intron (NM_018742, intron 1 of 3)	547.0	NM_018742	54399.0	Mm.155696	NM_018742	ENSMUSG00000025484	Bet1l	2610021K23Rik|Gs15	Bet1 golgi vesicular membrane trafficking protein like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-88734319-4	chr15	88734223	88734423	+	938.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033274)	promoter-TSS (NM_001033274)	-104.0	NM_001033274	223770.0	Mm.254438	NM_001033274	ENSMUSG00000022387	Brd1	1110059H06Rik|AI316859|mKIAA4191	bromodomain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-138827950-3	chr7	138827838	138828038	+	921.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	18329.0	NM_001045483	69546.0	Mm.31598	NM_027115	ENSMUSG00000041775	Mapk1ip1	2310009E07Rik|AU043776|MISS	mitogen-activated protein kinase 1 interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-144292101-2	chr1	144292001	144292201	+	648.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_T|LINE|L1	-42997.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-28841233-2	chr2	28841133	28841333	+	720.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166033)	promoter-TSS (NM_001166033)	827.0	NM_001033294	227674.0	Mm.44179	NM_001033294	ENSMUSG00000026806	Ddx31	5830444G11Rik|Gm997	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 31	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-84146053-4	chr17	84145934	84146134	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41913.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-145860549-3	chr6	145860450	145860650	+	828.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_024469, exon 5 of 5)	3' UTR (NM_024469, exon 5 of 5)	4870.0	NM_024469	79362.0	Mm.154529	NM_024469	ENSMUSG00000030256	Bhlhe41	6430520M22Rik|Bhlhb2l|Bhlhb3|DEC2|Sharp1	basic helix-loop-helix family, member e41	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122887098-1	chr8	122886998	122887198	+	609.0	f1_c57bl6.idr	intron (NM_001081379, intron 11 of 12)	intron (NM_001081379, intron 11 of 12)	38724.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	-1.5061220274826	-1.47360709383584	-1.48343987814663	-1.49151681994238	-1.50383953926072	-1.47147628845725	-1.0170701920923	-1.49007105122263	2.15652851593596	0.535359572134045	1
Merged-chr11-104319466-4	chr11	104319233	104319433	+	763.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038609, intron 9 of 11)	intron (NM_001038609, intron 9 of 11)	87897.0	NM_001285454	17762.0	Mm.1287	NM_010838	ENSMUSG00000018411	Mapt	AI413597|AW045860|Mtapt|Tau	microtubule-associated protein tau	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-9973269-2	chr19	9973169	9973369	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-7331.0	NR_073181	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-80296189-5	chr18	80296064	80296264	+	881.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001190373, exon 4 of 4)	exon (NM_001190373, exon 4 of 4)	39858.0	NM_025861	66943.0	Mm.29247	NM_025861	ENSMUSG00000034006	Pqlc1	2310009N05Rik|4933425L21Rik|5730564E11Rik|C78974	PQ loop repeat containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25287215-2	chr7	25287115	25287315	+	926.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_027882, exon 8 of 20)	exon (NM_027882, exon 8 of 20)	5036.0	NM_027882	71722.0	Mm.28833	NM_027882	ENSMUSG00000005442	Cic	1200010B10Rik|mKIAA0306	capicua transcriptional repressor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-29239261-2	chr7	29239161	29239361	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357664, intron 1 of 7)	intron (NM_001357664, intron 1 of 7)	804.0	NM_001357664	77254.0	Mm.36699	NM_029887	ENSMUSG00000030588	Yif1b	9430029K10Rik|Yip1b	Yip1 interacting factor homolog B (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-8608399-2	chr11	8608299	8608499	+	640.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 2 of 30)	intron (NM_001083587, intron 2 of 30)	56136.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-29360893-4	chr17	29360806	29361006	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013710)	promoter-TSS (NM_013710)	-8.0	NM_013710	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	6.39316422903541	6.11055575725928	5.59706368698163	6.11645433972079	6.49050665614695	6.10226704358166	6.45758563310812	6.51986110823968	0.345019946855431	0.134250386077726	0.571939985148542
Merged-chr4-107277079-4	chr4	107276956	107277156	+	851.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355460, intron 4 of 5)	intron (NM_001355460, intron 4 of 5)	23153.0	NM_028394	72938.0	Mm.21787	NM_028394	ENSMUSG00000063172	Hspb11	2900042B11Rik|IFT25|PP25	heat shock protein family B (small), member 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-138866686-2	chr4	138866568	138866768	+	734.56665	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3199.0	NM_001122954	18784.0	Mm.486532	NM_011110	ENSMUSG00000041193	Pla2g5	PLA2|sPLA2	phospholipase A2, group V	protein-coding	0.685663244678712	1.69185146882565	1.26594225981113	1.81834928767639	1.1630826547648	0.733874464627286	0.71946791930334	1.08522801003375	-2.02861279052505	0.166487879688704	0.631860474643107
Merged-chr10-79680273-2	chr10	79680173	79680373	+	618.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2B|LTR|ERVL	-1922.0	NM_001359818	216150.0	Mm.21981	NM_177613	ENSMUSG00000020307	Cdc34	AI327276|E2-CDC34|UBE2R1	cell division cycle 34	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94575184-2	chr10	94575084	94575284	+	890.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001168684)	promoter-TSS (NM_001168684)	-73.0	NM_001168684	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-110446986-2	chr5	110446886	110447086	+	831.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001317042, intron 1 of 2)	intron (NM_001317042, intron 1 of 2)	1517.0	NM_001317042	381668.0	Mm.348782	NM_028596	ENSMUSG00000043323	Fbrsl1	2410025L10Rik|AI467568|Gm1049|Gm29766|mKIAA1545	fibrosin-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-6442513-4	chr2	6442428	6442628	+	954.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001080548, exon 15 of 15)	3' UTR (NM_001080548, exon 15 of 15)	89792.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-8849636-4	chr10	8849534	8849734	+	959.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 2 of 19)	RSINE1|SINE|B4	36436.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-17766669-4	chr17	17766577	17766777	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	62736.0	NM_001104539	626942.0	Mm.404019	NM_001104539	ENSMUSG00000092120	Vmn2r90	EG626942	vomeronasal 2, receptor 90	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-33973609-4	chr2	33973503	33973703	+	820.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-85657.0	NM_175184	72543.0	Mm.254914	NM_175184	ENSMUSG00000038740	Mvb12b	2610200O14Rik|2610528K11Rik|AI414895|Fam125b	multivesicular body subunit 12B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-31945641-2	chr16	31945541	31945741	+	663.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_172822, exon 3 of 3)	exon (NM_172822, exon 3 of 3)	2880.0	NR_027897	106264.0	Mm.347369	NM_025320	ENSMUSG00000107002	0610012G03Rik	AI839730	RIKEN cDNA 0610012G03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-85080988-2	chr17	85080888	85081088	+	659.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163623, intron 4 of 13)	intron (NM_001163623, intron 4 of 13)	9279.0	NM_145984	213760.0	Mm.259035	NM_145984	ENSMUSG00000024127	Prepl	2810457N15Rik|9530014L06Rik|D030028O16Rik|mKIAA0436	prolyl endopeptidase-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-90202332-2	chr9	90202232	90202432	+	630.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_194334, exon 13 of 13)	3' UTR (NM_194334, exon 13 of 13)	39354.0	NM_001311115	108153.0	Mm.102141	NM_001003911	ENSMUSG00000032363	Adamts7	ADAM-TS7|ADAMTS7B	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-55400730-2	chr8	55400630	55400830	+	614.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	446002.0	NM_001253756	234267.0	Mm.241700	NM_153581	ENSMUSG00000031517	Gpm6a	Gpm6|M6A	glycoprotein m6a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-53565782-2	chr17	53565682	53565882	+	548.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-1189.0	NM_020005	18519.0	Mm.255025	NM_020005	ENSMUSG00000000708	Kat2b	A930006P13Rik|AI461839|AW536563|Pcaf|p/CAF	K(lysine) acetyltransferase 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-55507603-2	chr13	55507503	55507703	+	579.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_105910)	promoter-TSS (NR_105910)	89.0	NR_105910	102465570.0		NR_105910	ENSMUSG00000099096	Mir6945	Gm27779|mmu-mir-6945	microRNA 6945	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-46381307-1	chr17	46381207	46381407	+	544.0	f1_balb.idr	Intergenic	Intergenic	-2459.0	NM_207671	57908.0	Mm.439916	NM_021346	ENSMUSG00000015597	Zfp318	2610034E08Rik|D530032D06Rik|TZF|Znf318	zinc finger protein 318	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-62287867-4	chr10	62287768	62287968	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010438, intron 13 of 21)	intron (NM_010438, intron 13 of 21)	35430.0	NM_009314	21337.0	Mm.8054	NM_009314	ENSMUSG00000020081	Tacr2	Nk2r|Skr|Tac2r	tachykinin receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-11676802-3	chr18	11676711	11676911	+	841.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045527, intron 3 of 17)	PB1D9|SINE|Alu	19462.0	NM_001081223	225182.0	Mm.154275	NM_175458	ENSMUSG00000041238	Rbbp8	9930104E21Rik|CtIP|RBBP-8|RIM|SAE2	retinoblastoma binding protein 8, endonuclease	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-29248541-2	chr11	29248441	29248641	+	750.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER21A|LTR|ERV1	-1269.0	NM_025740	216618.0	Mm.128663	NM_025740	ENSMUSG00000020462	Cfap36	2300003H10|4931428D14Rik|Ccdc104	cilia and flagella associated protein 36	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-30904812-4	chr3	30904704	30904904	+	973.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001165955, exon 14 of 14)	3' UTR (NM_001165955, exon 14 of 14)	48854.0	NM_001286994	71862.0	Mm.272019	NM_027965	ENSMUSG00000037661	Gpr160	1700025D19Rik|GPCR150	G protein-coupled receptor 160	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117354337-2	chr11	117354237	117354437	+	560.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_017380, intron 5 of 9)	intron (NM_017380, intron 5 of 9)	22024.0	NM_001113488	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-106551294-6	chr7	106551175	106551375	+	941.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER5|LTR|ERV1	93370.0	NM_001277179	434223.0	Mm.276443	NM_001277179		Gm1966	-	predicted gene 1966	protein-coding	1.64375812315217	1.31177574229471	1.24754572193416	1.19430333434912	3.91471565685983	3.54856733501108	4.4404502361813	3.23596623722998	5.56622033134285	9.23218050146164e-07	6.01998378568135e-05
Merged-chr15-64223603-3	chr15	64223497	64223697	+	840.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 3 of 28)	intron (NM_001276461, intron 3 of 28)	89076.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	-1.27480050717774	-0.604729833679879	-1.25573295904267	-1.26493563944758	-1.27428069156472	-1.24210192204986	-1.25319678955844	-1.26328836405502	-2.6632876257018	0.439827081912762	1
Merged-chr17-25114411-2	chr17	25114237	25114437	+	894.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027880, intron 2 of 20)	B3|SINE|B2	1568.0	NM_027880	71718.0	Mm.288702	NM_027880	ENSMUSG00000024170	Telo2	1200003M09Rik|AI415602|Tel2|mKIAA0683	telomere maintenance 2	protein-coding	1.11322851980017	1.73399883732054	0.963029796137901	1.73628193673342	1.75318817367927	1.60218540404527	0.967245209633479	2.1891161475561	0.849963867619326	0.495178059408739	0.935871639606743
Merged-chr8-117054308-4	chr8	117054210	117054410	+	993.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029686, intron 14 of 42)	intron (NM_029686, intron 14 of 42)	28139.0	NM_029686	76645.0	Mm.159753	NM_029686	ENSMUSG00000034416	Pkd1l2	1700126L06Rik	polycystic kidney disease 1 like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114821465-3	chr11	114821360	114821560	+	786.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22536.0	NM_181749	217302.0	Mm.269127	NM_181749	ENSMUSG00000034677	Gpr142	PGR2	G protein-coupled receptor 142	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-38404470-4	chr18	38404378	38404578	+	956.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR48|LTR|ERV1	-14429.0	NM_022996	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41900706-4	chr19	41900610	41900810	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4557.0	NM_199447	107094.0	Mm.276044	NM_199447	ENSMUSG00000035049	Rrp12	AA408556|AA536972|mKIAA0690	ribosomal RNA processing 12 homolog (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-123146518-2	chr10	123146418	123146618	+	761.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301628, intron 7 of 20)	intron (NM_001301628, intron 7 of 20)	50501.0	NM_027604	14479.0	Mm.244209	NM_027604	ENSMUSG00000020124	Usp15	4921514G19Rik|AI327321|E430033I05Rik|Gcap18	ubiquitin specific peptidase 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-87028953-4	chr3	87028862	87029062	+	949.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Rod|LINE|L1	-29622.0	NM_007639	12479.0	Mm.1894	NM_007639	ENSMUSG00000028076	Cd1d1	AI747460|CD1.1|Cd1a|Cd1d|Ly-38	CD1d1 antigen	protein-coding	2.20532159203511	3.17522203787429	2.78112062202129	3.34039560392265	2.93432283833558	2.49956580314147	1.83774598257016	3.15620599547285	-0.436832941176081	0.5630942005125	0.960362415684079
Merged-chr19-4083896-2	chr19	4083796	4083996	+	711.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001160252, intron 1 of 5)	intron (NM_001160252, intron 1 of 5)	377.0	NM_013878	29866.0	Mm.46268	NM_013878	ENSMUSG00000024857	Cabp2	-	calcium binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-14820077-3	chr1	14820006	14820206	+	812.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-64140.0	NM_010827	17681.0	Mm.5820	NM_010827	ENSMUSG00000025930	Msc	MyoR|bHLHa22	musculin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-11991918-2	chr15	11991818	11992018	+	563.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011294, intron 2 of 4)	intron (NM_011294, intron 2 of 4)	4089.0	NM_011294	20024.0	Mm.41746	NM_011294	ENSMUSG00000022205	Sub1	AI842364|P15|P9|Pc4|Rpo2tc1	SUB1 homolog (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-24603135-4	chr5	24603023	24603223	+	830.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1121.0	NM_025891	66993.0	Mm.436539	NM_025891	ENSMUSG00000028949	Smarcd3	1500001J14Rik|2210409C08Rik|BAF60C	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135487161-3	chr5	135487076	135487276	+	865.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146001, intron 1 of 30)	(CCA)n|Simple_repeat|Simple_repeat	57946.0	NM_146001	215114.0	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-142619834-4	chr3	142619733	142619933	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010260)	promoter-TSS (NM_010260)	-830.0	NM_010260	14469.0	Mm.24038	NM_010260	ENSMUSG00000028270	Gbp2	-	guanylate binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-97770452-4	chr1	97770337	97770537	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173760)	promoter-TSS (NM_173760)	265.0	NM_001310773	252876.0	Mm.86090	NM_026250	ENSMUSG00000026333	Gin1	4930429M06Rik|8430411H10Rik|Gin-1|Zh2c2	gypsy retrotransposon integrase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71483479-2	chr17	71483382	71483582	+	993.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8139.0	NM_028887	74355.0	Mm.194450	NM_028887	ENSMUSG00000024054	Smchd1	4931400A14Rik|AW554188|MommeD1|mKIAA0650	SMC hinge domain containing 1	protein-coding	-1.36245527554381	-1.47758440807466	-1.48704571646499	-1.19707836829368	-1.50667469222183	-1.47553410307769	-1.4849038836314	-1.49342636832094	-1.86907304515541	0.591535440840713	1
Merged-chr3-135298790-2	chr3	135298690	135298890	+	569.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027208, intron 7 of 9)	intron (NM_027208, intron 7 of 9)	-8910.0	NM_178877	97086.0	Mm.441764	NM_178877	ENSMUSG00000037994	Slc9b2	C80638|NHA2|NHE10|Nhedc2|nha-oc|nhaoc	solute carrier family 9, subfamily B (NHA2, cation proton antiporter 2), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-93754878-4	chr1	93754771	93754971	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025920)	promoter-TSS (NM_025920)	-33.0	NM_025920	67026.0	Mm.272356	NM_025920	ENSMUSG00000026279	Thap4	2010320B01Rik	THAP domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64382604-4	chr5	64382491	64382691	+	996.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	85351.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-37969545-4	chr13	37969446	37969646	+	877.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24662.0	NM_025965	107513.0	Mm.426670	NM_025965	ENSMUSG00000021427	Ssr1	2510001K09Rik|6330400D04|AI159733|AI452176|SSR|TRAPA	signal sequence receptor, alpha	protein-coding	1.57589478682394	2.63489109149424	1.22285576858235	3.04422749527097	2.14992684170035	1.26669207725102	2.07798214906807	2.80688488304648	-0.316473323453817	0.763582242420591	0.998431161219273
Merged-chr15-53485434-3	chr15	53485360	53485560	+	833.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177225, intron 4 of 4)	intron (NM_177225, intron 4 of 4)	128819.0	NR_039538	100628567.0		NR_039538	ENSMUSG00000104794	Mir28c	mmu-mir-28c	microRNA 28c	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-111035463-2	chr8	111035363	111035563	+	686.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146217, intron 1 of 20)	intron (NM_146217, intron 1 of 20)	1621.0	NM_146217	234734.0	Mm.24174	NM_146217	ENSMUSG00000031960	Aars	AI316495|C76919|sti	alanyl-tRNA synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-3487434-1	chr2	3487334	3487534	+	892.0	f0_balb.idr	Intergenic	IAPEz-int|LTR|ERVK	-12448.0	NR_027509	64707.0	Mm.23483	NM_022724	ENSMUSG00000026646	Suv39h2	4930507K23Rik|AA536750|D030054H19Rik|D2Ertd544e|KMT1B	suppressor of variegation 3-9 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-12867015-4	chr10	12866901	12867101	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5266.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-123968756-4	chr9	123968654	123968854	+	892.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009912)	promoter-TSS (NM_009912)	-62.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97430472-4	chr6	97430389	97430589	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	28797.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-44042358-4	chr1	44042239	44042439	+	648.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	-22333.0	NM_001013799	433294.0	Mm.123621	NM_001013799	ENSMUSG00000047343	Mettl21c	A530098C11Rik	methyltransferase like 21C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-73175235-2	chr14	73175135	73175335	+	894.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_134083, intron 12 of 14)	intron (NM_134083, intron 12 of 14)	31616.0	NR_030459	751541.0		NR_030459	ENSMUSG00000076121	Mir687	Mirn687|mir-687|mmu-mir-687	microRNA 687	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43724950-3	chr4	43724851	43725051	+	705.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2247.0	NM_027511	100039781.0	Mm.18796	NM_027511	ENSMUSG00000071001	Hrct1	3830408D24Rik	histidine rich carboxyl terminus 1	protein-coding	0.385321624513243	0.25844108162816	0.251524807403199	0.792863309346009	0.984260110444283	0.259996912591909	0.253052289518633	0.800029535775391	1.05979876328386	0.584096629982352	1
Merged-chr6-24527669-4	chr6	24527586	24527786	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080847)	promoter-TSS (NM_080847)	4.0	NM_001311068	68202.0	Mm.275780	NM_026614	ENSMUSG00000023089	Ndufa5	2900002J19Rik|CI-13kD-B	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-91184548-3	chr12	91184409	91184609	+	793.972229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181815, intron 20 of 25)	intron (NM_181815, intron 20 of 25)	74280.0	NR_030473	735273.0		NR_030473	ENSMUSG00000076118	Mir669c	Mirn669c|Mirn669c-1	microRNA 669c	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55806470-3	chr19	55806370	55806570	+	772.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001331146, intron 4 of 14)	intron (NM_001331146, intron 4 of 14)	64660.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	2.20228363089979	2.32979357400831	3.303280704386	2.64352776325324	1.78952066147055	2.48975318913586	2.26925923150697	2.45176007454876	-0.90568489090567	0.264232098066079	0.766503073645264
Merged-chr16-11322440-2	chr16	11322340	11322540	+	998.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028964)	promoter-TSS (NM_028964)	-464.0	NM_028964	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152765433-2	chr1	152765333	152765533	+	644.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346117, intron 1 of 18)	intron (NM_001346117, intron 1 of 18)	872.0	NM_001346119	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10694867-2	chr19	10694767	10694967	+	726.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361958, intron 1 of 4)	RSINE1|SINE|B4	-5901.0	NM_001361964	107305.0	Mm.19091	NM_181403	ENSMUSG00000048832	Vps37c	5730409F24Rik|AU042646	vacuolar protein sorting 37C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-8710658-2	chr19	8710558	8710758	+	642.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161413, intron 4 of 9)	intron (NM_001161413, intron 4 of 9)	3239.0	NM_008577	17254.0	Mm.4114	NM_008577	ENSMUSG00000010095	Slc3a2	4F2|4F2HC|AI314110|Cd98|Ly-10|Ly-m10|Ly10|Mdu1|Mgp-2hc|NACAE	solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133247798-1	chr4	133247698	133247898	+	707.0	f1_c57bl6.idr	intron (NM_016693, intron 15 of 28)	(TG)n|Simple_repeat|Simple_repeat	6980.0	NM_016693	53608.0	Mm.36640	NM_016693	ENSMUSG00000028862	Map3k6	Ask2|MAPKKK6|MEKK6	mitogen-activated protein kinase kinase kinase 6	protein-coding	1.00280023685077	1.31280907735375	0.282574592090832	0.890206770312148	0.264715229317454	0.294073822659867	0.284658602636974	0.276521432328536	-4.5012121521218	0.0183206515054653	1
Merged-chr1-171615390-2	chr1	171615293	171615493	+	794.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-7983.0	NM_001277968	17085.0	Mm.560	NM_008534	ENSMUSG00000004707	Ly9	AI893573|CD229|Lgp100|Ly-9|SLAMF3|T100	lymphocyte antigen 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-8724587-2	chr19	8724487	8724687	+	697.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_002896, intron 3 of 9)	intron (NR_002896, intron 3 of 9)	1100.0	NR_002896	83673.0	Mm.292489	NR_002896	ENSMUSG00000108414	Snhg1	-	small nucleolar RNA host gene 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-36657142-2	chr16	36657042	36657242	+	710.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019388, intron 1 of 7)	intron (NM_019388, intron 1 of 7)	8935.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-8138479-2	chr2	8138379	8138579	+	578.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13B|LTR|ERVK	-742281.0	NM_001110231	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-100116993-1	chr12	100116893	100117093	+	543.0	f1_c57bl6.idr	intron (NM_008947, intron 6 of 9)	MER5B|DNA|hAT-Charlie	4662.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152607687-3	chr1	152607565	152607765	+	637.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346119, intron 2 of 17)	intron (NM_001346119, intron 2 of 17)	17552.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-62223584-2	chr11	62223484	62223684	+	640.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001281818)	TTS (NM_001281818)	-25400.0	NM_007413	11541.0	Mm.40740	NM_007413	ENSMUSG00000018500	Adora2b	A2BAR|A2BR|A2b|AA2BR|AI480866|AI605384	adenosine A2b receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-120452604-4	chr6	120452502	120452702	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10595.0	NM_008359	16172.0	Mm.4481	NM_008359	ENSMUSG00000002897	Il17ra	AW538159|Cdw217|Il17r|VDw217	interleukin 17 receptor A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-39639160-3	chr8	39639033	39639233	+	794.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113326, intron 1 of 9)	intron (NM_001113326, intron 1 of 9)	3545.0	NM_031195	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	0.400206022081964	0.148546252968047	0.91094764789594	0.137570683101237	0.130795930498811	0.149940247395548	0.479983404181823	0.574136372790999	-0.637195119266787	0.750516756844487	1
Merged-chr14-21804279-2	chr14	21804179	21804379	+	841.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27282.0	NM_011695	22334.0	Mm.262327	NM_011695	ENSMUSG00000021771	Vdac2	Vdac6|mVDAC2|mVDAC6	voltage-dependent anion channel 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-51100852-7	chr13	51100733	51100933	+	979.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029463)	promoter-TSS (NR_029463)	-47.0	NM_001283028	20729.0	Mm.188432	NM_011462	ENSMUSG00000021395	Spin1	Spin	spindlin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-68060866-4	chr15	68060757	68060957	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	197999.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-4980289-2	chr3	4980189	4980389	+	999.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	-109987.0	NR_153343	100503882.0	Mm.139814	NR_153343	ENSMUSG00000096922	Gm17308	-	predicted gene, 17308	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-9130047-4	chr13	9129954	9130154	+	872.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172585, intron 3 of 17)	intron (NM_172585, intron 3 of 17)	36173.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-105198219-2	chr13	105198123	105198323	+	889.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360891, intron 5 of 7)	Lx2|LINE|L1	94791.0	NM_027934	71816.0	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	2.2992087492832	4.53769461556833	2.67365993541034	2.93233757415366	1.99868310735566	3.74033224463481	2.39164104285324	1.67088863333583	-1.14019342523575	0.170352944369774	0.63774766639248
Merged-chr16-91416477-3	chr16	91416397	91416597	+	953.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008349, intron 4 of 6)	MLT1A1|LTR|ERVL-MaLR	10262.0	NM_008349	16155.0	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-101472927-4	chr2	101472810	101473010	+	907.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-151838.0	NM_009020	19374.0	Mm.4988	NM_009020	ENSMUSG00000032864	Rag2	Rag-2	recombination activating gene 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31196151-3	chr14	31196045	31196245	+	887.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347583, intron 3 of 13)	B2_Mm2|SINE|B2	10681.0	NM_022656	64652.0	Mm.298728	NM_022656	ENSMUSG00000021910	Nisch	1200007D05Rik|3202002H23Rik|AW494485|I-1|edsn	nischarin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85123790-4	chr12	85123675	85123875	+	933.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_030225, exon 10 of 15)	exon (NM_030225, exon 10 of 15)	12942.0	NM_030225	78920.0	Mm.296221	NM_030225	ENSMUSG00000004789	Dlst	1600017E01Rik|4632413C10Rik|4930529O08Rik|DLTS	dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140370611-3	chr5	140370509	140370709	+	909.2666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172277, intron 1 of 10)	intron (NM_172277, intron 1 of 10)	18699.0	NM_172277	231834.0	Mm.27098	NM_172277	ENSMUSG00000029560	Snx8	B130023O14Rik	sorting nexin 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65546487-4	chr9	65546464	65546664	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33523.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-83272263-2	chr17	83272163	83272363	+	696.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	56980.0	NM_134117	106522.0	Mm.311974	NM_134117	ENSMUSG00000024247	Pkdcc	AI115348|AW548124|Adtk1|ESTM17|MAd1|Sgk493|Vlk|X83346	protein kinase domain containing, cytoplasmic	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-58950945-2	chr19	58950845	58951045	+	848.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178689, intron 3 of 13)	intron (NM_178689, intron 3 of 13)	-7273.0	NM_001327998	73442.0	Mm.39739	NM_175199	ENSMUSG00000025092	Hspa12a	1700063D12Rik|AI118035|AI840429|AW048913|AW556406|D5Mgi40|Gm19925|mKIAA0417	heat shock protein 12A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-83701343-2	chr2	83701243	83701443	+	762.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER21B|LTR|ERVL	-23054.0	NM_008402	16410.0	Mm.227	NM_008402	ENSMUSG00000027087	Itgav	1110004F14Rik|2610028E01Rik|CD51|D430040G12Rik	integrin alpha V	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-20960324-3	chr11	20960215	20960415	+	712.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-129207.0	NM_173752	216551.0	Mm.76694	NM_173752	ENSMUSG00000042363	Lgalsl	1110067D22Rik|A530071M23|Grpa|Hspc159|Lgalsla	lectin, galactoside binding-like	protein-coding	0.386281300102711	0.0563170424007422	0.0516652215324896	0.198275778790905	0.291986821992117	0.520446870003216	0.358451091548224	0.0487167512671633	1.09440485172888	0.581385490377259	1
Merged-chr15-86215122-2	chr15	86215022	86215222	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145476, intron 1 of 12)	intron (NM_145476, intron 1 of 12)	663.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-57291574-2	chr17	57291474	57291674	+	804.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163816, intron 1 of 25)	B3A|SINE|B2	12474.0	NM_001163815	22324.0	Mm.248172	NM_011691	ENSMUSG00000034116	Vav1	Vav|vav-T	vav 1 oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-181929071-2	chr2	181928971	181929171	+	789.416626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62155.0	NM_001205282	672125.0	Mm.489571	NM_001205282	ENSMUSG00000098505	Gm14496	-	predicted gene 14496	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-158144478-4	chr2	158144380	158144580	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009373, intron 1 of 12)	intron (NM_009373, intron 1 of 12)	1912.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-24541004-4	chr8	24540875	24541075	+	899.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145949, intron 7 of 9)	intron (NM_145949, intron 7 of 9)	35358.0	NM_145949	209176.0	Mm.219580	NM_145949	ENSMUSG00000031549	Ido2	AI265623|C230043N17Rik|Ido-2|Indol1	indoleamine 2,3-dioxygenase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-121034977-1	chr7	121034877	121035077	+	1000.0	f0_balb.idr	intron (NM_021554, intron 1 of 4)	CpG	532.0	NM_021554	59052.0	Mm.29122	NM_021554	ENSMUSG00000030876	Mettl9	0610012D09Rik|AA517660|Drev|MNCb-5680	methyltransferase like 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-51170419-4	chr3	51170324	51170524	+	943.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54023.0	NM_009834	12457.0	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-90996737-2	chr16	90996637	90996837	+	594.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001045515, intron 2 of 32)	PB1D9|SINE|Alu	14358.0	NM_001045515	104015.0	Mm.187079	NM_001045515	ENSMUSG00000022973	Synj1	A930006D20Rik|AA675315|mKIAA0910	synaptojanin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-62342992-5	chr14	62342979	62343179	+	919.82666	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026001, intron 1 of 10)	intron (NM_026001, intron 1 of 10)	11011.0	NM_026001	67153.0	Mm.26040	NM_026001	ENSMUSG00000021932	Rnaseh2b	1110019N06Rik|2610207P08Rik|Dleu8	ribonuclease H2, subunit B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-13851841-3	chr10	13851737	13851937	+	606.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025446, intron 1 of 5)	L2|LINE|L2	17120.0	NM_025446	66253.0	Mm.45755	NM_025446	ENSMUSG00000019806	Aig1	1500031O19Rik|AV064870|AW413422|CGI-103	androgen-induced 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-37318140-3	chr1	37318043	37318243	+	953.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030266, intron 1 of 25)	intron (NM_030266, intron 1 of 25)	18305.0	NM_001290797	269180.0	Mm.5294	NM_030266	ENSMUSG00000026113	Inpp4a	107kDa|9630012D15|D130048C09Rik|R74740	inositol polyphosphate-4-phosphatase, type I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-95902441-4	chr16	95902378	95902578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040484, intron 1 of 3)	B4A|SINE|B4	-3765.0	NR_040485	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-193931549-2	chr1	193931454	193931654	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	291205.0	NR_040477	74942.0	Mm.60689	NR_040477	ENSMUSG00000103692	4930503O07Rik	-	RIKEN cDNA 4930503O07 gene	ncRNA	2.73081475133498	2.5093775240609	2.42279273394021	3.17582092755166	2.01015612662853	1.40646678452361	1.84340012429672	2.11338134788927	-2.02729847809372	0.0197074839187094	0.177888968963831
Merged-chr2-30599740-2	chr2	30599640	30599840	+	541.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030137, intron 1 of 1)	intron (NM_030137, intron 1 of 1)	4696.0	NM_030137	78617.0	Mm.40413	NM_030137	ENSMUSG00000047363	Cstad	9530039B02Rik	CSA-conditional, T cell activation-dependent protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-13383705-4	chr1	13383615	13383815	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M5|LINE|L1	-9632.0	NM_008678	17978.0	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-69441185-4	chr9	69441119	69441319	+	675.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12464.0	NM_007585	12306.0	Mm.238343	NM_007585	ENSMUSG00000032231	Anxa2	AW215814|Cal1h	annexin A2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-24667063-2	chr16	24666963	24667163	+	562.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 6 of 12)	intron (NM_178665, intron 6 of 12)	-54792.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-67554044-3	chr3	67553954	67554154	+	967.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28714.0	NM_025813	66868.0	Mm.491153	NM_025813	ENSMUSG00000027775	Mfsd1	1200003O06Rik	major facilitator superfamily domain containing 1	protein-coding	0.857613141669688	0.660044401772495	0.630312992546394	1.85500139024936	0.382514034453876	0.666649409524197	0.408750361749887	0.610983597351414	-3.12590758080121	0.0590061260072246	0.358882477104434
Merged-chr8-126853224-4	chr8	126853141	126853341	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4221.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69423468-2	chr11	69423368	69423568	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081330, intron 79 of 85)	intron (NM_001081330, intron 79 of 85)	-9793.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-121309255-4	chr2	121309161	121309361	+	852.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_032393, exon 7 of 7)	3' UTR (NM_032393, exon 7 of 7)	13807.0	NM_001173506	17754.0	Mm.36501	NM_032393	ENSMUSG00000027254	Map1a	6330416M19Rik|AI853608|Mtap-1|Mtap1|Mtap1a|moth1	microtubule-associated protein 1 A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30373715-4	chr7	30373620	30373820	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10948.0	NM_175478	233067.0	Mm.23157	NM_175478	ENSMUSG00000036957	Lrfn3	A530045B06Rik|SALM4	leucine rich repeat and fibronectin type III domain containing 3	protein-coding	4.98766695083104	5.40816947095189	4.25800744503337	4.87515856358991	5.15117360959028	3.99156451395545	3.20755791136772	4.53414837034456	-0.644014899054458	0.157360949140256	0.614055724561402
Merged-chr15-36173981-4	chr15	36173886	36174086	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023127)	promoter-TSS (NM_023127)	-24.0	NM_023127	17749.0	Mm.27375	NM_023127	ENSMUSG00000045996	Polr2k	ABC10-alpha|MafY|Mt1a|RPABC4|RPB10alpha|RPB12|RPB7.0	polymerase (RNA) II (DNA directed) polypeptide K	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-77776521-2	chr18	77776421	77776621	+	744.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_007505, intron 2 of 11)	RSINE1|SINE|B4	-2636.0	NM_001357531	225745.0	Mm.39293	NM_146089	ENSMUSG00000041840	Haus1	BC024400|Ccdc5|HEI-C	HAUS augmin-like complex, subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-116126688-4	chr3	116126504	116126704	+	987.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011693, intron 2 of 8)	MIR3|SINE|MIR	3084.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-79696327-3	chr10	79696286	79696486	+	923.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_038088)	TTS (NR_038088)	2560.0	NM_001302499	16904.0	Mm.378960	NM_008504	ENSMUSG00000054206	Gzmm	Lmet1|MMET-1	granzyme M (lymphocyte met-ase 1)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-69702112-2	chr3	69702012	69702212	+	630.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19943.0	NM_133787	97112.0	Mm.21062	NM_133787	ENSMUSG00000027787	Nmd3	C87860	NMD3 ribosome export adaptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-84574972-2	chr10	84574872	84575072	+	580.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1975.0	NM_146008	216198.0	Mm.296142	NM_146008	ENSMUSG00000020034	Tcp11l2	E430026E19Rik	t-complex 11 (mouse) like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-23744818-2	chr17	23744718	23744918	+	749.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_028416, intron 2 of 9)	intron (NM_028416, intron 2 of 9)	1011.0	NM_028416	73016.0	Mm.221319	NM_028416	ENSMUSG00000040680	Kremen2	2900054E04Rik|Krm2	kringle containing transmembrane protein 2	protein-coding	-0.719668593078644	-1.16403364937312	-1.00758898798598	-1.18337273127143	-1.18809839507284	-1.16173278673118	-1.17224760187868	-1.18181157732017	-2.51634718883157	0.443357463893338	1
Merged-chr6-39453756-2	chr6	39453656	39453856	+	641.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	33378.0	NR_152168	621427.0	Mm.389742	NR_152168	ENSMUSG00000068601	Gm10244	Anmkrn1	predicted gene 10244	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-106747859-1	chr6	106747759	106747959	+	605.0	f1_c57bl6.idr	intron (NM_008370, intron 1 of 12)	intron (NM_008370, intron 1 of 12)	1178.0	NM_008370	16192.0	Mm.3448	NM_008370	ENSMUSG00000005364	Il5ra	CD125|CDw125|Il5r	interleukin 5 receptor, alpha	protein-coding	1.28486381441613	0.804491818470775	1.40434110918539	1.4633133604632	1.0700129441088	0.807062469217126	1.15431197986155	1.4719263164285	-0.484732131290996	0.723036729334434	0.998431161219273
Merged-chr17-5935856-3	chr17	5935746	5935946	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(GA)n|Simple_repeat|Simple_repeat	-5434.0	NM_001113353	20975.0	Mm.236068	NM_011523	ENSMUSG00000023805	Synj2	AI481647|SJ2|mKIAA0348	synaptojanin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-13494461-4	chr8	13494385	13494585	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019521)	promoter-TSS (NM_019521)	50.0	NM_019521	14456.0	Mm.3982	NM_019521	ENSMUSG00000031451	Gas6	Gas-6	growth arrest specific 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-31452995-4	chr15	31452775	31452975	+	807.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145852, intron 1 of 4)	intron (NM_145852, intron 1 of 4)	814.0	NM_145852	252967.0	Mm.436668	NM_145852	ENSMUSG00000022236	Ropn1l	ASP|AV047578|Akapasp	ropporin 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-15719831-2	chr17	15719701	15719901	+	691.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007690, intron 2 of 35)	intron (NM_007690, intron 2 of 35)	14834.0	NM_007690	12648.0	Mm.8137	NM_007690	ENSMUSG00000023852	Chd1	4930525N21Rik|AI851787|AW555109	chromodomain helicase DNA binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-108699062-2	chr12	108698962	108699162	+	606.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027299, intron 1 of 2)	intron (NM_027299, intron 1 of 2)	3244.0	NM_001171002	70059.0	Mm.207605	NM_027299	ENSMUSG00000021263	Degs2	2210008A03Rik|AI852933|DES2	delta(4)-desaturase, sphingolipid 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122481286-2	chr8	122481186	122481386	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001357349)	TTS (NM_001357349)	5143.0	NR_152823	66965.0	Mm.482288	NM_153775	ENSMUSG00000049482	Ctu2	2310061F22Rik|C16orf84|Ncs2	cytosolic thiouridylase subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-32205310-4	chr11	32205174	32205374	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030093)	promoter-TSS (NM_030093)	-141.0	NM_030093	78372.0	Mm.29952	NM_030093	ENSMUSG00000040767	Snrnp25	3300001G02Rik|AL033324|C16ORF33	small nuclear ribonucleoprotein 25 (U11/U12)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-123042424-4	chr8	123042325	123042525	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_037865)	promoter-TSS (NR_037865)	-141.0	NM_001081379	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-30559747-1	chr17	30559647	30559847	+	553.0	f0_c57.idr	intron (NM_172618, intron 1 of 11)	intron (NM_172618, intron 1 of 11)	16540.0	NM_172618	224671.0	Mm.41220	NM_027060	ENSMUSG00000062202	Btbd9	1700023F20Rik|4930402L05|AI464421	BTB (POZ) domain containing 9	protein-coding	1.81473578672607	0.858178330667108	1.05656089515431	0.831187978468102	1.59432724446274	1.71031855291642	1.52740354036266	1.03603003689811	0.934731623408111	0.48757445936894	0.932902141745994
Merged-chr11-84830165-2	chr11	84830065	84830265	+	996.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_046281, intron 2 of 2)	B2_Mm2|SINE|B2	987.0	NR_046281	74995.0	Mm.84413	NR_046281	ENSMUSG00000086799	4930502E09Rik	-	RIKEN cDNA 4930502E09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-41434796-3	chr9	41434688	41434888	+	717.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131928, intron 3 of 4)	intron (NR_131928, intron 3 of 4)	-40105.0	NR_131931	73144.0	Mm.38166	NM_001033153	ENSMUSG00000074415	3110039I08Rik	2610203C20Rik|AI848448|D230004N17Rik|D3Mgi9|Mir100hg	RIKEN cDNA 3110039I08 gene	ncRNA	-1.18818405238703	-1.1621273909064	-1.17340543805306	-1.18266956177369	-0.508992984534732	-1.15968339104222	-1.17085233538681	-1.18101128805699	2.76775479490304	0.421927342186551	1
Merged-chr4-116704466-2	chr4	116704366	116704566	+	617.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025962, intron 3 of 3)	intron (NM_025962, intron 3 of 3)	3919.0	NM_025962	67096.0	Mm.252785	NM_025962	ENSMUSG00000028690	Mmachc	1810037K07Rik|CblC	methylmalonic aciduria cblC type, with homocystinuria	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-105516534-2	chr5	105516436	105516636	+	684.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2935.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	2.68722650782466	2.20255764310789	3.03864186623727	2.0846328493221	2.45647188311644	2.21720309093203	2.99336108958857	2.09378770062683	-0.162248620016669	0.840907051010021	0.998431161219273
Merged-chr13-18782332-3	chr13	18782229	18782429	+	945.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172120, intron 4 of 28)	intron (NM_172120, intron 4 of 28)	65037.0	NM_172120	218035.0	Mm.27389	NM_172120	ENSMUSG00000041236	Vps41	AI317346|Vam2|mVam2	VPS41 HOPS complex subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-38775580-4	chr16	38775466	38775666	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178924, intron 7 of 7)	intron (NM_178924, intron 7 of 7)	24637.0	NM_178924	22268.0	Mm.130793	NM_178924	ENSMUSG00000049436	Upk1b	AI413235|Tspan20|UPIb|Upk1	uroplakin 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115508920-4	chr5	115508811	115509011	+	943.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011223, intron 1 of 10)	intron (NM_011223, intron 1 of 10)	2235.0	NM_133915	19303.0	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	1.79572315149615	1.59270265834918	1.69667422761677	1.50984296611104	1.58882313767216	1.60294582587651	1.95891502965587	2.17610763104	0.65516500372079	0.52013869079404	0.947641799425091
Merged-chr16-94568023-2	chr16	94567923	94568123	+	958.1666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2183.0	NM_007890	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-47541471-1	chr14	47541371	47541571	+	664.0	f0_balb.idr	3' UTR (NM_172599, exon 10 of 10)	3' UTR (NM_172599, exon 10 of 10)	26963.0	NM_172599	100504663.0	Mm.287279	NM_172599	ENSMUSG00000037526	Atg14	4832427M01|Atg14L|D14Ertd114e|D14Ertd436e	autophagy related 14	protein-coding	3.0411441179317	2.24124761862481	1.48770927961868	2.99040179310061	2.29025620637655	3.20478031600296	2.48755426278914	3.00565952445202	0.384334342272581	0.640947784836225	0.982599433509505
Merged-chr17-28553244-4	chr17	28553130	28553330	+	826.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001034871)	TTS (NM_001034871)	3743.0	NM_001034871	328788.0	Mm.99400	NM_001034871	ENSMUSG00000024224	Clpsl2	Gm749	colipase-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-40681315-4	chr12	40681201	40681401	+	956.241699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 12 of 52)	intron (NM_172803, intron 12 of 52)	235248.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-60915932-4	chr18	60915828	60916028	+	794.383301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038499, intron 1 of 1)	MIR|SINE|MIR	3688.0	NM_001038499	545260.0	Mm.20147	NM_001038499	ENSMUSG00000036412	Arsi	BC020108	arylsulfatase i	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102385196-6	chr12	102385106	102385306	+	904.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177620, intron 8 of 9)	intron (NM_177620, intron 8 of 9)	54607.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167702315-3	chr2	167702211	167702411	+	636.133301	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11134.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-106448709-3	chr9	106448638	106448838	+	967.6333619999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029631)	promoter-TSS (NM_029631)	98.0	NM_029631	76491.0	Mm.335427	NM_029631	ENSMUSG00000042073	Abhd14b	1810013B01Rik	abhydrolase domain containing 14b	protein-coding	2.42133921190259	0.997952165915215	2.64892306156497	2.35213695506374	1.33973303537011	1.00403662050746	1.24550956855327	1.20655984519644	-3.12610364286872	0.00992433164327598	0.108510447499415
Merged-chr15-27788292-2	chr15	27788192	27788392	+	816.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081302, intron 34 of 56)	intron (NM_001081302, intron 34 of 56)	-106750.0	NM_001242423	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-109983791-2	chr4	109983691	109983891	+	823.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_172296)	TTS (NM_172296)	5766.0	NM_172296	242620.0	Mm.32825	NM_172296	ENSMUSG00000047143	Dmrta2	Dmrt5	doublesex and mab-3 related transcription factor like family A2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-3710451-2	chr8	3710351	3710551	+	595.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD-int|LTR|ERVL-MaLR	10200.0	NM_029465	75863.0	Mm.109183	NM_029465	ENSMUSG00000074491	Clec4g	4930572L20Rik	C-type lectin domain family 4, member g	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-13753880-4	chr8	13753785	13753985	+	640.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-3771.0	NM_027276	69957.0	Mm.182412	NM_027276	ENSMUSG00000038416	Cdc16	2700071J12Rik|2810431D22Rik|APC6	CDC16 cell division cycle 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55839327-3	chr19	55839244	55839444	+	700.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_138565, intron 4 of 15)	intron (NR_138565, intron 4 of 15)	-55977.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-57108523-3	chr2	57108420	57108620	+	740.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001139509, intron 7 of 7)	intron (NM_001139509, intron 7 of 7)	6518.0	NM_013613	18227.0	Mm.3507	NM_013613	ENSMUSG00000026826	Nr4a2	HZF-3|NOT|Nurr1|RNR-1|TINOR|TINUR	nuclear receptor subfamily 4, group A, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-46837534-2	chr11	46837434	46837634	+	804.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_178759, intron 6 of 8)	intron (NM_178759, intron 6 of 8)	26735.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-94254184-1	chr6	94254084	94254284	+	854.5	f0_balb.idr	intron (NM_001029850, intron 1 of 23)	intron (NM_001029850, intron 1 of 23)	-16742.0	NR_130996	78178.0	Mm.452749	NR_130996	ENSMUSG00000045095	4930511A08Rik	-	RIKEN cDNA 4930511A08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-93189859-2	chr13	93189759	93189959	+	595.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_154997, intron 1 of 15)	intron (NR_154997, intron 1 of 15)	2558.0	NM_001361536	100715.0	Mm.242865	NM_133905	ENSMUSG00000042167	Papd4	8030446C20Rik|AI649009|GLD-2|Gld2	PAP associated domain containing 4	protein-coding	-0.0249128552461544	0.321782825659848	-0.0154892572568586	0.379718968681298	-0.024041842930282	0.328907858728836	-0.0144711171004092	0.385317354114019	0.0334349691168256	0.987607905691552	1
Merged-chr6-108556062-3	chr6	108555965	108556165	+	940.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	66322.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-112130378-4	chr12	112130279	112130479	+	774.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029590)	promoter-TSS (NR_029590)	-501.0	NR_029590	387199.0		NR_029590	ENSMUSG00000065574	Mir203	Mirn203|mir-203|mmu-mir-203	microRNA 203	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-52338831-3	chr14	52338737	52338937	+	823.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10167.0	NM_015772	50524.0	Mm.39487	NM_015772	ENSMUSG00000049532	Sall2	AI225809|AW559097|Msal-2|Sal-2|mKIAA0360|p150(Sal2)	spalt like transcription factor 2	protein-coding	2.51189328993007	2.32768122357033	1.80245166221603	1.44784083157798	1.66771889534251	1.07620371285205	1.05235342213195	1.6172018031017	-2.08480408883562	0.0678929558619484	0.390748169698588
Merged-chr15-58080636-2	chr15	58080536	58080736	+	892.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4B|LINE|L1	-4128.0	NM_009572	22770.0	Mm.244931	NM_009572	ENSMUSG00000022361	Zhx1	-	zinc fingers and homeoboxes 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-27724409-11	chr15	27724316	27724516	+	923.242432	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42874.0	NM_001242423	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-107011846-4	chr11	107011745	107011945	+	860.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-12320.0	NM_010655	16647.0	Mm.12508	NM_010655	ENSMUSG00000018362	Kpna2	2410044B12Rik|IPOA1|PTAC58|Rch1	karyopherin (importin) alpha 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-148568089-4	chr2	148567985	148568185	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A0-int|LTR|ERVL-MaLR	-104530.0	NM_019761	56488.0	Mm.34663	NM_019761	ENSMUSG00000036992	Nxt1	1110001N02Rik	NTF2-related export protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-108703895-2	chr8	108703795	108703995	+	980.6666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CCG)n|Simple_repeat|Simple_repeat	-10749.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	3.34750950490617	2.93934133827514	3.24607514754851	3.23933244466995	3.02627814081485	2.96039445390762	3.0843790423971	3.17401845860244	-0.247633296463318	0.676000542590447	0.99440487726309
Merged-chr3-67568438-4	chr3	67568337	67568537	+	984.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14331.0	NM_025813	66868.0	Mm.491153	NM_025813	ENSMUSG00000027775	Mfsd1	1200003O06Rik	major facilitator superfamily domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-109255185-4	chr3	109255075	109255275	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-85508.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	4.47304718378263	4.3250902583602	5.34170535000001	5.09525657277002	4.2299613643089	4.71991154510956	5.46018437971116	5.08622567481087	0.0844471954190706	0.828440082712379	0.998431161219273
Merged-chr10-128338644-4	chr10	128338541	128338741	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026444, intron 1 of 10)	intron (NM_026444, intron 1 of 10)	914.0	NM_026444	12974.0	Mm.58836	NM_026444	ENSMUSG00000005683	Cs	2610511A05Rik|9030605P22Rik|Ahl4|BB234005|Cis	citrate synthase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-118869845-4	chr10	118869718	118869918	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001014390)	promoter-TSS (NM_001014390)	-915.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-91740754-2	chr12	91740654	91740854	+	695.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 2 of 6)	intron (NM_175367, intron 2 of 6)	45682.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-22859740-4	chr11	22859636	22859836	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016888)	promoter-TSS (NM_016888)	-1.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150009098-4	chr4	150008993	150009193	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173371)	promoter-TSS (NM_173371)	-70.0	NM_173371	100198.0	Mm.22183	NM_173371	ENSMUSG00000028980	H6pd	AI785303|G6pd1|Gpd-1|Gpd1	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-93285199-1	chr10	93285099	93285299	+	566.0	f1_balb.idr	intron (NM_001322265, intron 1 of 4)	intron (NM_001322265, intron 1 of 4)	25960.0	NM_001322268	13713.0	Mm.4454	NM_013508	ENSMUSG00000008398	Elk3	D430049E23Rik|Erp|Etrp|Net|Sap-2	ELK3, member of ETS oncogene family	protein-coding	0.453590634211369	0.143416500184943	0.139226077159748	0.595995343443782	0.364249061914952	0.144367804972125	0.140146118873188	0.601934384488841	-0.165262778110059	0.935782325290523	1
Merged-chr1-173935056-3	chr1	173934955	173935155	+	693.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001302651, exon 5 of 8)	exon (NM_001302651, exon 5 of 8)	7437.0	NM_001302649	15950.0	Mm.463437	NM_008328	ENSMUSG00000039997	Ifi203	Ifi203a|Ifi203b|Mndal	interferon activated gene 203	protein-coding	-0.185188603157123	-0.169533562878972	0.160455212001056	0.134002111224432	-0.184208793603639	-0.168380753428661	-0.17352311195487	0.646114401176307	0.76883700121625	0.74341641168765	1
Merged-chr5-101935507-2	chr5	101935407	101935607	+	824.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 15 of 66)	B4|SINE|B4	134414.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-98293874-2	chr12	98293774	98293974	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25239.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-46334292-4	chr18	46334184	46334384	+	914.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22356.0	NM_001160399	240261.0	Mm.329416	NM_001160399	ENSMUSG00000071855	Ccdc112	8430438M01Rik|AW108467	coiled-coil domain containing 112	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-112268055-4	chr2	112267921	112268121	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133649, intron 1 of 24)	intron (NM_133649, intron 1 of 24)	1707.0	NM_133649	107723.0	Mm.491155	NM_133648	ENSMUSG00000027130	Slc12a6	9530023I19Rik|KCC3|gaxp	solute carrier family 12, member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81139486-2	chr10	81139386	81139586	+	910.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_010731, intron 1 of 2)	intron (NM_010731, intron 1 of 2)	3215.0	NM_010731	16969.0	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-38778319-4	chr12	38778252	38778452	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1730.0	NM_001347379	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-7232983-4	chr10	7232889	7233089	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20752.0	NM_172546	215748.0	Mm.37984	NM_172546	ENSMUSG00000015202	Cnksr3	6820402C05|BC024086|Magi1	Cnksr family member 3	protein-coding	4.61790536676624	4.66192109865904	5.50976027816003	5.12445519821413	4.9608060124338	4.69451511989536	5.5963980983203	4.94372189224966	0.0772968088599793	0.825970648264721	0.998431161219273
Merged-chr6-17066109-3	chr6	17065997	17066197	+	839.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207176, intron 1 of 6)	intron (NM_207176, intron 1 of 6)	948.0	NM_207176	21753.0	Mm.436548	NM_011570	ENSMUSG00000029552	Tes	D6Ertd352e|TESS|Tes1|Tes2|testin2	testis derived transcript	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-154897624-2	chr4	154897524	154897724	+	657.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025582, intron 3 of 6)	intron (NM_025582, intron 3 of 6)	1419.0	NM_025582	66469.0	Mm.41868	NM_025582	ENSMUSG00000029059	Fam213b	2810405K02Rik|AI836168|PM/PGFS	family with sequence similarity 213, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-23007767-4	chr11	23007651	23007851	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5636.0	NM_028672	73873.0	Mm.252406	NM_028672	ENSMUSG00000049811	Fam161a	4930430E16Rik	family with sequence similarity 161, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-45829330-4	chr9	45829244	45829444	+	837.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081373)	promoter-TSS (NM_001081373)	-706.0	NM_001081373	214552.0	Mm.260103	NM_172531	ENSMUSG00000043987	Cep164	AI450905|BC027092|D030051D21|mKIAA1052	centrosomal protein 164	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165288663-3	chr2	165288581	165288781	+	759.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252574)	promoter-TSS (NM_001252574)	-843.0	NR_045544	228875.0	Mm.21184	NM_144893	ENSMUSG00000017664	Slc35c2	C85957|CGI-15|D2Wsu58e|Ovcov1	solute carrier family 35, member C2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127288508-3	chr10	127288395	127288595	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347171, intron 1 of 12)	intron (NM_001347171, intron 1 of 12)	523.0	NM_001347171	110962.0	Mm.372826	NM_033072	ENSMUSG00000025409	Mbd6	D10Wsu93e	methyl-CpG binding domain protein 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-17676642-4	chr12	17676545	17676745	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14164.0	NM_001361645	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-61654884-2	chr11	61654784	61654984	+	644.400024	f1_balb.idr|f1_c57bl6.idr	intron (NM_027817, intron 1 of 4)	intron (NM_027817, intron 1 of 4)	1563.0	NM_027817	71520.0	Mm.202760	NM_027817	ENSMUSG00000004837	Grap	8430435N19Rik|BB233594	GRB2-related adaptor protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-47936582-4	chr19	47936499	47936699	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME3G|LINE|L1	-1113.0	NM_001163267	381229.0	Mm.300553	NM_001163267	ENSMUSG00000046585	Cfap58	Ccdc147|Gm969	cilia and flagella associated protein 58	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-119921220-4	chr7	119921110	119921310	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21099.0	NR_126475	73919.0	Mm.46381	NM_029610	ENSMUSG00000030922	Lyrm1	1110065L10Rik|2310004B22Rik|4930404J24Rik	LYR motif containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-46788552-4	chr7	46788464	46788664	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005247, intron 4 of 22)	intron (NM_001005247, intron 4 of 22)	7317.0	NM_001005248	246694.0	Mm.379442	NM_178742	ENSMUSG00000014418	Hps5	AI646796|AL022647|C85120|haze|hz|maroon|mr|ru-2|ru2	HPS5, biogenesis of lysosomal organelles complex 2 subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-31295282-4	chr17	31295197	31295397	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153062)	promoter-TSS (NM_153062)	-186.0	NM_153062	224674.0	Mm.311395	NM_153062	ENSMUSG00000024036	Slc37a1	G3PP	solute carrier family 37 (glycerol-3-phosphate transporter), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-63279352-2	chr17	63279268	63279468	+	784.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_015794, intron 6 of 8)	intron (NM_015794, intron 6 of 8)	33605.0	NR_130176	414079.0	Mm.444282	NR_130176	ENSMUSG00000090565	4930405O22Rik	-	RIKEN cDNA 4930405O22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-95195937-2	chr4	95195837	95196037	+	706.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-143715.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-21429184-2	chr16	21429084	21429284	+	726.099976	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285894, intron 1 of 45)	B4|SINE|B4	6066.0	NM_001285894	209018.0	Mm.235683	NM_145948	ENSMUSG00000033653	Vps8	AI315068|AU040738|mKIAA0804	VPS8 CORVET complex subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-194879791-4	chr1	194879702	194879902	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57801.0	NR_039539	100628615.0		NR_039539	ENSMUSG00000092633	Mir3962	mmu-mir-3962|mu-mir-3962	microRNA 3962	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-111089068-3	chr11	111088972	111089172	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22908.0	NM_008425	16518.0	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding	4.29210678675624	3.8570809511648	4.51420859405839	4.62994601990706	1.25481806160742	2.73109007430548	1.43147449257115	1.36283905518821	-4.48966177685885	2.31285713290329e-08	2.44849940122708e-06
Merged-chr4-59803603-4	chr4	59803492	59803692	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2058.0	NM_172468	209131.0	Mm.259705	NM_172468	ENSMUSG00000028385	Snx30	4732481H14Rik|C030041J06Rik	sorting nexin family member 30	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-102793100-3	chr9	102793051	102793251	+	841.694458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41769.0	NM_013649	20187.0	Mm.335391	NM_013649	ENSMUSG00000032547	Ryk	AW536699|ERK-3|Vik	receptor-like tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21143175-2	chr9	21143075	21143275	+	906.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_016742, exon 2 of 8)	exon (NM_016742, exon 2 of 8)	6731.0	NM_016742	12539.0	Mm.32331	NM_016742	ENSMUSG00000019471	Cdc37	p50|p50Cdc37	cell division cycle 37	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-157628852-2	chr3	157628752	157628952	+	544.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011196, intron 2 of 2)	(TG)n|Simple_repeat|Simple_repeat	61960.0	NM_011196	19218.0	Mm.30424	NM_011196	ENSMUSG00000040016	Ptger3	EP3|Pgerep3|Ptgerep3	prostaglandin E receptor 3 (subtype EP3)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-60991721-4	chr9	60991635	60991835	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25334.0	NR_040767	330956.0	Mm.207985	NR_040767	ENSMUSG00000111290	Gm5122	A430102L10	predicted gene 5122	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-66882593-4	chr9	66882517	66882717	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	37088.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84823863-3	chr8	84823764	84823964	+	867.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033145, intron 1 of 1)	intron (NR_033145, intron 1 of 1)	-1041.0	NM_201227	23863.0	Mm.304252	NM_201227	ENSMUSG00000053226	Dand5	Cerl-2|Cerl2|Cerr2|Dte|GREM3|coco	DAN domain family member 5, BMP antagonist	protein-coding	1.68837605802704	3.40993158312185	2.87348060382134	2.26910367833548	1.24768783203465	2.69930857800928	2.60489331602322	1.98047498508403	-0.930873890680792	0.313243315967917	0.815012282416452
Merged-chr12-91776481-4	chr12	91776402	91776602	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 1 of 6)	intron (NM_175367, intron 1 of 6)	9934.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-140767108-3	chr6	140766986	140767186	+	850.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	140201.0	NM_001309436	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-99325027-5	chr5	99325010	99325210	+	765.200012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-72183.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	-0.123563589300846	1.16010099482712	-0.105789831550427	-0.112389528238246	0.584534588708465	-0.0954980340655761	-0.103920527030524	-0.111229656643019	-1.33428088911024	0.560847045689105	1
Merged-chr11-48834478-4	chr11	48834386	48834586	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053166, intron 1 of 6)	tRNA-Ala-GCG|tRNA|tRNA	-2985.0	NM_001347446	94089.0	Mm.390335	NM_053166	ENSMUSG00000040350	Trim7	AI790312	tripartite motif-containing 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-81039542-4	chr3	81039437	81039637	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019971, intron 1 of 5)	intron (NM_019971, intron 1 of 5)	3121.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-57913000-4	chr15	57912920	57913120	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356310, intron 1 of 19)	intron (NM_001356310, intron 1 of 19)	821.0	NM_001356310	210544.0	Mm.390835	NM_199300	ENSMUSG00000022364	Tbc1d31	4B3|D330013L20Rik|Gm85|Wdr67	TBC1 domain family, member 31	protein-coding	4.48956883044782	4.0164706107532	5.61208241523313	5.58495585303983	2.09517676287183	4.67015980874721	3.44627794568487	2.64590950215614	-1.92071221472131	0.0314300383317341	0.244339697562081
Merged-chr2-93598568-2	chr2	93598468	93598668	+	772.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43866.0	NM_007442	11695.0	Mm.389389	NM_007442	ENSMUSG00000040310	Alx4	lst	aristaless-like homeobox 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19069675-2	chr7	19069575	19069775	+	931.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_031255, intron 5 of 5)	B3A|SINE|B2	-6525.0	NM_010058	13401.0	Mm.2852	NM_010058	ENSMUSG00000030410	Dmwd	DMR-N9|Dm9	dystrophia myotonica-containing WD repeat motif	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43958370-2	chr4	43958270	43958470	+	735.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_027450, intron 1 of 4)	intron (NM_027450, intron 1 of 4)	668.0	NM_027450	384009.0	Mm.22213	NM_027450	ENSMUSG00000028480	Glipr2	5730414A08Rik|C77180|GAPR-1	GLI pathogenesis-related 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-55464953-2	chr12	55464853	55465053	+	813.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27694.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-97825487-2	chr3	97825387	97825587	+	624.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039376, intron 3 of 46)	intron (NM_001039376, intron 3 of 46)	-57473.0	NR_110360	83679.0	Mm.129840	NM_031401	ENSMUSG00000038170	Pde4dip	4732458A06Rik|9430063L05Rik|C87016|D130016K21Rik|D3Bwg1078e|Usmg4|mKIAA0454	phosphodiesterase 4D interacting protein (myomegalin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115617427-2	chr11	115617327	115617527	+	940.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252394, intron 4 of 5)	intron (NM_001252394, intron 4 of 5)	-4458.0	NM_001243587	69674.0	Mm.390387	NM_027162	ENSMUSG00000020743	Mif4gd	1110014L05Rik|2310075G12Rik	MIF4G domain containing	protein-coding	-0.768073096085151	-1.110218439389	-1.12089137361577	-0.833128841020431	-1.13168813266638	-1.10790557001884	-1.11847525525089	-1.12808913895361	-2.53565945346057	0.435894434332211	1
Merged-chr11-97533256-4	chr11	97533153	97533353	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018873, intron 10 of 19)	intron (NM_018873, intron 10 of 19)	-32913.0	NM_001289118	100141474.0	Mm.482426	NM_001289118	ENSMUSG00000047988	4933428G20Rik	-	RIKEN cDNA 4933428G20 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-16433481-2	chr14	16433381	16433581	+	605.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289760, intron 9 of 9)	intron (NM_001289760, intron 9 of 9)	68275.0	NM_009409	21974.0	Mm.130362	NM_009409	ENSMUSG00000017485	Top2b	D230016L12Rik|Top-2	topoisomerase (DNA) II beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-79323336-4	chr8	79323226	79323426	+	779.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28248.0	NR_045823	234479.0	Mm.238026	NR_045822		Gm4890	A630049P17	predicted gene 4890	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-80235464-3	chr15	80235317	80235517	+	712.138916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357659, intron 2 of 6)	intron (NM_001357659, intron 2 of 6)	1337.0	NM_178719	239555.0	Mm.307163	NM_178719	ENSMUSG00000022412	Mief1	A230016E22|AI452372|Smcr7l	mitochondrial elongation factor 1	protein-coding	0.949097828637686	1.07307517679684	0.670419156826884	0.846949055936194	1.37524484100792	1.58822405649436	0.672915724062455	1.14287934972576	1.62753330048153	0.261605912279455	0.762933275855131
Merged-chr4-63410210-4	chr4	63410094	63410294	+	997.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6749.0	NM_001045514	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141669289-4	chr4	141669195	141669395	+	892.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TTTG)n|Simple_repeat|Simple_repeat	-5180.0	NM_001033150	69582.0	Mm.33220	NM_001033150	ENSMUSG00000028917	Plekhm2	2310034J19Rik|AI854247|mKIAA0842	pleckstrin homology domain containing, family M (with RUN domain) member 2	protein-coding	3.66354828493299	4.56775114891175	3.06136027666485	2.96935405336904	3.03855387605094	2.76743977346867	3.98757340478057	3.61721080927183	-0.429951009819631	0.485114032239398	0.931753689758342
Merged-chr17-50513041-4	chr17	50512938	50513138	+	890.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013880, intron 1 of 5)	intron (NM_013880, intron 1 of 5)	3491.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-111122271-4	chr7	111122191	111122391	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015573, intron 1 of 2)	CpG	384.0	NR_015573	75479.0	Mm.381620	NR_015573	ENSMUSG00000110424	1700012D14Rik	-	RIKEN cDNA 1700012D14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76816768-2	chr15	76816668	76816868	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198420, intron 1 of 10)	intron (NM_198420, intron 1 of 10)	1402.0	NM_001168288	223666.0	Mm.322931	NM_198420	ENSMUSG00000033697	Arhgap39	9530053N22|AI843066|D15Wsu169e|Kiaa1688|Porf-2	Rho GTPase activating protein 39	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-60890368-4	chr8	60890254	60890454	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357270)	promoter-TSS (NM_001357270)	-39.0	NM_028299	72612.0	Mm.25263	NM_028299	ENSMUSG00000038005	Hpf1	2700029M09Rik|C230006B22Rik|C4orf27	histone PARylation factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-25861475-4	chr17	25861346	25861546	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163766)	promoter-TSS (NM_001163766)	69.0	NM_001163766	106618.0	Mm.35470	NM_134124	ENSMUSG00000073434	Wdr90	3230401M21Rik|AI551153|mKIAA1924	WD repeat domain 90	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-36473822-2	chr3	36473722	36473922	+	810.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009673, intron 2 of 12)	intron (NM_009673, intron 2 of 12)	1702.0	NR_105976	102466786.0		NR_105976	ENSMUSG00000098808	Mir7009	Gm27472|mmu-mir-7009	microRNA 7009	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-87617005-1	chr17	87616905	87617105	+	588.0	f0_balb.idr	Intergenic	Intergenic	-18974.0	NM_008532	17075.0	Mm.4259	NM_008532	ENSMUSG00000045394	Epcam	CD326|EGP|EGP-2|Egp314|Ep-CAM|EpCAM1|GA733-2|Ly74|TROP1|Tacsd1|Tacstd1|gp40	epithelial cell adhesion molecule	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80663770-4	chr10	80663672	80663872	+	943.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6701.0	NM_145361	208198.0	Mm.60720	NM_145361	ENSMUSG00000003344	Btbd2	2610037C03Rik|4930512K17Rik	BTB (POZ) domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26933119-4	chr17	26933020	26933220	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302397)	promoter-TSS (NM_001302397)	-7.0	NM_001302397	21652.0	Mm.258953	NM_009343	ENSMUSG00000024193	Phf1	AW557215|D17Ertd455e|Pcl1|Phf2|Tctex3	PHD finger protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-43449594-4	chr6	43449498	43449698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045988, intron 1 of 2)	MTD|LTR|ERVL-MaLR	7169.0	NR_045988	319812.0	Mm.446393	NR_045988		9430018G01Rik	-	RIKEN cDNA 9430018G01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-24083924-2	chr7	24083861	24084061	+	582.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289637, intron 1 of 3)	intron (NM_001289637, intron 1 of 3)	2064.0	NM_001289637	210135.0	Mm.32254	NM_172483	ENSMUSG00000057101	Zfp180	2310040I01Rik|AI852378|D130011P11|HHZ168	zinc finger protein 180	protein-coding	-1.84303373260285	-1.81303463126392	-1.82210660711932	-1.82955859819738	-1.84092785115721	-1.81106869625141	-1.8200529106377	-1.54273750312762	1.50114612804783	0.670102668014672	1
Merged-chr17-34457598-1	chr17	34457498	34457698	+	853.0	f1_balb.idr	intron (NM_001163855, intron 22 of 23)	intron (NM_001163855, intron 22 of 23)	18339.0	NM_030746	632126.0	Mm.484958	NM_030746	ENSMUSG00000058435	Btnl4	Btn3a3|EG632126|NG11	butyrophilin-like 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135702136-2	chr5	135702036	135702236	+	850.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008898, intron 1 of 15)	intron (NM_008898, intron 1 of 15)	12991.0	NM_008898	18984.0	Mm.3863	NM_008898	ENSMUSG00000005514	Por	4933424M13Rik|CPR|CYPOR|P450R	P450 (cytochrome) oxidoreductase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-44543731-3	chr11	44543628	44543828	+	597.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166553, intron 4 of 5)	intron (NM_001166553, intron 4 of 5)	24351.0	NM_001166553	74315.0	Mm.156771	NM_028862	ENSMUSG00000019189	Rnf145	3732413I11Rik|TMRF1	ring finger protein 145	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-99126227-4	chr13	99126115	99126315	+	747.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-38294.0	NR_045495	69603.0	Mm.390632	NR_045495	ENSMUSG00000100410	2310020H05Rik	-	RIKEN cDNA 2310020H05 gene	ncRNA	2.33457534844275	1.78972735417035	2.52774310358219	2.34158547385938	2.24267598993492	2.74604835328036	2.93128640326394	2.84349003686094	0.937680992023418	0.231701972822143	0.726217416384554
Merged-chr3-65654783-2	chr3	65654683	65654883	+	768.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4505.0	NR_106200	102465905.0		NR_106200	ENSMUSG00000098944	Mir8120	Gm27637|mmu-mir-8120	microRNA 8120	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-56757904-3	chr4	56757800	56758000	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026079, intron 34 of 36)	URR1B|DNA|hAT-Charlie	14478.0	NM_009611	11470.0	Mm.30959	NM_009611	ENSMUSG00000070979	Actl7a	Tact2	actin-like 7a	protein-coding	4.7733893417192	5.05262523469862	4.65765361590238	4.2332401680322	2.73315145901228	3.8837336237366	1.75205070606256	2.90222170064456	-2.35243811557585	1.76458560194725e-05	0.000736827078381547
Merged-chr11-118973057-2	chr11	118972957	118973157	+	690.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15124.0	NM_001359574	238011.0	Mm.244114	NM_001030291	ENSMUSG00000046697	Enpp7	Alk-SMase|Gm254	ectonucleotide pyrophosphatase/phosphodiesterase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101540892-4	chr7	101540791	101540991	+	991.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14911.0	NM_007490	11871.0	Mm.439746	NM_007490	ENSMUSG00000092517	Art2a-ps	ARTC2|Art2a|Ly92a|Rt-6|Rt6|Rt6-1	ADP-ribosyltransferase 2a, pseudogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-58931997-3	chr2	58931900	58932100	+	757.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362394, intron 10 of 13)	intron (NM_001362394, intron 10 of 13)	176816.0	NM_029692	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-47435406-3	chr9	47435318	47435518	+	749.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-94752.0	NM_001310841	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	1.76722128517474	1.19917041624286	2.15702498128125	1.15392879071389	1.89684988720235	2.36008149383784	2.27786562055341	2.10511830771099	1.4362433420718	0.177153641525122	0.646831829281317
Merged-chr7-126607093-2	chr7	126606993	126607193	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12183.0	NM_145636	246779.0	Mm.222632	NM_145636	ENSMUSG00000044701	Il27	IL-27|IL-27p28|Il30|p28	interleukin 27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167346994-2	chr2	167346894	167347094	+	781.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019835, intron 1 of 8)	B3|SINE|B2	2184.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-50060130-4	chr6	50060030	50060230	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-50111.0	NM_019939	56524.0	Mm.41288	NM_008016	ENSMUSG00000038388	Mpp6	P55t|Pals2	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	protein-coding	4.90010565331869	5.06448292909944	4.95198356344413	4.67103829722106	4.48462116008	5.2085270501008	4.11955719572472	4.12642948729758	-0.428228211031417	0.25587992017364	0.754347336004447
Merged-chr5-104000056-2	chr5	103999956	104000156	+	647.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_053262, intron 5 of 6)	AT_rich|Low_complexity|Low_complexity	21740.0	NM_053262	114664.0	Mm.46019	NM_053262	ENSMUSG00000029311	Hsd17b11	Dhrs8|Pan1b|SDR2|retSDR2	hydroxysteroid (17-beta) dehydrogenase 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-73802537-2	chr13	73802437	73802637	+	760.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360694, intron 17 of 24)	intron (NM_001360694, intron 17 of 24)	38840.0	NM_011390	20499.0	Mm.275800	NM_011390	ENSMUSG00000017756	Slc12a7	AA408796|D13Ertd261e|Kcc4	solute carrier family 12, member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-66917614-4	chr9	66917513	66917713	+	888.80835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	2092.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-37960084-3	chr13	37959988	37960188	+	801.266663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34120.0	NM_025965	107513.0	Mm.426670	NM_025965	ENSMUSG00000021427	Ssr1	2510001K09Rik|6330400D04|AI159733|AI452176|SSR|TRAPA	signal sequence receptor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-147052294-3	chr5	147052094	147052294	+	589.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080795, intron 1 of 9)	intron (NM_080795, intron 1 of 9)	24378.0	NM_080795	140887.0	Mm.272203	NM_080795	ENSMUSG00000016520	Lnx2	9630046H24|AW209022	ligand of numb-protein X 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118705231-2	chr9	118705128	118705328	+	866.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 15 of 27)	intron (NM_133721, intron 15 of 27)	-6464.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	2.25049419551244	2.11570109143778	1.07757681328979	1.97247919289778	1.01679206169303	2.88960255823398	1.0844094493411	2.21049129416911	0.323083590629603	0.787928190899915	0.998431161219273
Merged-chr5-92505663-4	chr5	92505552	92505752	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007644)	promoter-TSS (NM_007644)	5.0	NM_007644	12492.0	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-95713786-4	chr8	95713683	95713883	+	808.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001195006, exon 15 of 15)	3' UTR (NM_001195006, exon 15 of 15)	-2130.0	NM_001035123	66083.0	Mm.261321	NM_001035123	ENSMUSG00000031671	Setd6	0610039J04Rik|3110004G14Rik|AI413388|C76402	SET domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-46521726-1	chr13	46521626	46521826	+	950.0	f0_balb.idr	intron (NM_026056, intron 1 of 12)	L1MA5|LINE|L1	19823.0	NM_026056	67252.0	Mm.44529	NM_026056	ENSMUSG00000021373	Cap2	2810452G09Rik|AV045235	CAP, adenylate cyclase-associated protein, 2 (yeast)	protein-coding	-0.602450903397848	-0.591543248980128	-0.59512238547997	-0.597880109957622	-0.121719677169582	-0.590735729728802	-0.016318596352091	-0.597398576439261	3.39236972216895	0.224104991986096	1
Merged-chr12-21543417-4	chr12	21543317	21543517	+	900.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-125981.0	NM_011739	22630.0	Mm.289630	NM_011739	ENSMUSG00000076432	Ywhaq	2700028P07Rik|AA409740|AU021156|R74690	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	protein-coding	2.71728056536557	3.10195453697183	1.58699125087892	2.06330130621479	3.95913288794619	4.81012691655288	4.31814085774577	3.70830197933558	2.72307482909741	1.57393833317128e-05	0.00066493352540102
Merged-chr2-84660470-4	chr2	84660381	84660581	+	921.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145100, intron 2 of 4)	intron (NM_001145100, intron 2 of 4)	1402.0	NM_001145100	100270744.0	Mm.393636	NM_001145100	ENSMUSG00000086598	Btbd18	Btbd18-ps|Gm13718	BTB (POZ) domain containing 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-7058478-2	chr19	7058378	7058578	+	886.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134147, intron 1 of 10)	intron (NM_134147, intron 1 of 10)	1710.0	NM_134147	107227.0	Mm.439977	NM_134147	ENSMUSG00000036278	Macrod1	AI604841|AW743046|D930010J01Rik|Lrp16	MACRO domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-70871678-4	chr6	70871567	70871767	+	967.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010121, intron 2 of 16)	intron (NM_010121, intron 2 of 16)	27152.0	NM_001313918	13666.0	Mm.247167	NM_010121	ENSMUSG00000031668	Eif2ak3	Pek|Perk	eukaryotic translation initiation factor 2 alpha kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101822039-2	chr7	101821939	101822139	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001122739)	TTS (NM_001122739)	3726.0	NM_008887	11859.0	Mm.5028	NM_008887	ENSMUSG00000007946	Phox2a	Arix|Phox2|Pmx2|Pmx2a|Px2a	paired-like homeobox 2a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-90668412-2	chr6	90668312	90668512	+	726.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356440, intron 11 of 13)	intron (NM_001356440, intron 11 of 13)	48117.0	NM_001134383	232227.0	Mm.196943	NM_182784	ENSMUSG00000034312	Iqsec1	AW561907|BC026481|BRAG2|D6Ertd349e|cI-43	IQ motif and Sec7 domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-136449445-4	chr6	136449301	136449501	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33832.0	NM_001201390	100502936.0	Mm.21182	NM_001201390	ENSMUSG00000045291	E330021D16Rik	C85549	RIKEN cDNA E330021D16 gene	protein-coding	1.53608075387192	0.959663771256572	2.4834640054954	0.921908232288326	1.55009530569868	1.22321515723528	1.55071378006466	1.86801009814093	-0.303301047734983	0.807625195091316	0.998431161219273
Merged-chr16-57030228-2	chr16	57030128	57030328	+	580.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MERV1_LTR|LTR|ERV1	41118.0	NM_001358101	69457.0	Mm.58105	NM_183281	ENSMUSG00000046748	Tmem45a2	2310005G13Rik	transmembrane protein 45A2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-125792763-6	chr2	125792702	125792902	+	839.4722289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9932.0	NM_177608	70354.0	Mm.138091	NM_133725	ENSMUSG00000035093	Secisbp2l	3110001I20Rik|AI504340|C630011I23	SECIS binding protein 2-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-60349220-4	chr10	60349115	60349315	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028732, intron 1 of 6)	intron (NM_028732, intron 1 of 6)	2364.0	NM_028732	74048.0	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-92885639-4	chr7	92885529	92885729	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028243, intron 1 of 8)	LTR48B|LTR|ERV1	10376.0	NM_028243	72461.0	Mm.389969	NM_028243	ENSMUSG00000061119	Prcp	2510048K03Rik|2610104A14Rik|AI451719|HUMPCP|PCP	prolylcarboxypeptidase (angiotensinase C)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-97997229-4	chr16	97997092	97997292	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_130962)	promoter-TSS (NR_130962)	-123.0	NM_001362093	245305.0	Mm.148033	NM_001362093		B230307C23Rik	8030444G23Rik|EG245305	RIKEN cDNA B230307C23 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-70843605-3	chr9	70843520	70843720	+	853.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001324473, intron 1 of 8)	B4A|SINE|B4	91188.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-78237946-4	chr16	78237848	78238048	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17506.0	NR_045698	100503619.0	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84642144-3	chr8	84642049	84642249	+	862.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	20703.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	1.25109582931329	0.812949553280541	1.02474358125642	2.01829047283588	1.26270870341263	0.816743511496933	1.03230674293596	2.03072359522861	0.0322387682948341	0.980985767691653	0.998431161219273
Merged-chr6-117921495-4	chr6	117921386	117921586	+	902.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166429, intron 3 of 3)	MER20|DNA|hAT-Charlie	4192.0	NM_001166427	98758.0	Mm.422979	NM_133834	ENSMUSG00000042079	Hnrnpf	4833420I20Rik|AA407306|Hnrpf	heterogeneous nuclear ribonucleoprotein F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-138172889-2	chr1	138172789	138172989	+	653.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001268286, intron 2 of 28)	intron (NM_001268286, intron 2 of 28)	2237.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-100501439-4	chr12	100501342	100501542	+	897.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033213, intron 1 of 19)	intron (NM_001033213, intron 1 of 19)	19380.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-50121231-5	chr17	50121075	50121275	+	875.6966550000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181397, intron 2 of 9)	intron (NM_181397, intron 2 of 9)	69322.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	1.13916725983762	1.32952265422224	1.26946069350321	0.872644253907963	0.530255150597142	0.773312460668227	0.550599968757795	0.542267052265355	-3.79334297799232	0.0219120197969588	0.19059962314445
Merged-chr18-70435209-1	chr18	70435109	70435309	+	813.0	f1_balb.idr	Intergenic	Intergenic	-37245.0	NM_029019	170461.0	Mm.83623	NM_029019	ENSMUSG00000079608	Stard6	1700011K09Rik|4833424I06Rik|4933429L05Rik|AI644424	StAR-related lipid transfer (START) domain containing 6	protein-coding	3.07852375436939	2.70616277485381	1.55589109845504	2.01492360774555	3.37292898704167	3.7687469504809	3.19885969518036	3.76335681239753	1.82330932567463	0.00991676847705903	0.108493667040505
Merged-chr16-43379500-2	chr16	43379400	43379600	+	804.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_181058, intron 2 of 6)	L1_Mus3|LINE|L1	40696.0	NR_046026	626693.0	Mm.447083	NR_046026	ENSMUSG00000085499	Gm15713	-	predicted gene 15713	ncRNA	0.212733253246607	0.927668492246702	1.08386611260327	0.224148215692121	0.214443517859725	0.939909782453649	0.232862976989939	0.225338521324858	-1.21849247162512	0.547337519083648	1
Merged-chr15-99049674-2	chr15	99049574	99049774	+	652.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5500.0	NM_001163588	19132.0	Mm.2477	NM_013639	ENSMUSG00000023484	Prph	Prph1	peripherin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-100725260-4	chr12	100725164	100725364	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001330702)	promoter-TSS (NM_001330702)	-144.0	NM_153587	73086.0	Mm.220417	NM_153587	ENSMUSG00000021180	Rps6ka5	3110005L17Rik|6330404E13Rik|AI854034|MSK1|MSPK1|RLPK|RLSK|S6K-alpha-5	ribosomal protein S6 kinase, polypeptide 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-101012265-3	chr3	101012184	101012384	+	910.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167906, intron 5 of 8)	intron (NM_001167906, intron 5 of 8)	17211.0	NM_001167906	630146.0	Mm.190915	NM_001099332	ENSMUSG00000086564	Cd101	EWI-101|Gm1016|Gm734|Igsf2	CD101 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-8681282-3	chr15	8681164	8681364	+	933.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_148938, intron 3 of 9)	intron (NM_148938, intron 3 of 9)	29543.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-104835630-2	chr12	104835530	104835730	+	649.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001040682, intron 1 of 12)	intron (NM_001040682, intron 1 of 12)	29446.0	NR_104436	94040.0	Mm.244078	NM_053155	ENSMUSG00000021097	Clmn	9330188N17Rik|AI428889|AI788815|mKIAA1188	calmin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-115854661-2	chr6	115854561	115854761	+	828.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001167763, intron 1 of 28)	B2_Mm2|SINE|B2	1133.0	NM_031177	81896.0	Mm.333335	NM_031177	ENSMUSG00000030323	Ift122	C86139|Wdr10|sopb	intraflagellar transport 122	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-37481892-2	chr19	37481792	37481992	+	808.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1L|LTR|ERVL-MaLR	16638.0	NR_131009	78640.0	Mm.234265	NR_131008		1700122C19Rik	-	RIKEN cDNA 1700122C19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98203698-3	chr11	98203634	98203834	+	996.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001109626, exon 1 of 14)	exon (NM_001109626, exon 1 of 14)	429.0	NM_001109626	69131.0	Mm.260516	NM_026952	ENSMUSG00000003119	Cdk12	1810022J16Rik|AI646528|Crk7|Crkrs|D11Ertd752e|Pksc	cyclin-dependent kinase 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-116283117-4	chr12	116283023	116283223	+	738.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028731, intron 1 of 21)	intron (NM_028731, intron 1 of 21)	1901.0	NM_028731	52635.0	Mm.273755	NM_028731	ENSMUSG00000021171	Esyt2	2410017M09Rik|4921504I16Rik|CHR2SYT|D12Ertd551e|Fam62b	extended synaptotagmin-like protein 2	protein-coding	1.85563599421508	1.76821490836464	1.92782503947301	1.76964671910047	1.58617740612932	1.0550259403916	1.03750175515371	1.53987460923993	-1.72137084342202	0.143542804294611	0.591443869750575
Merged-chr7-119872430-2	chr7	119872330	119872530	+	731.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163703, intron 1 of 2)	intron (NM_001163703, intron 1 of 2)	23028.0	NM_173408	233805.0	Mm.31539	NM_173408	ENSMUSG00000048787	Dcun1d3	1700020A13Rik|BC030335	DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-77834477-1	chr15	77834377	77834577	+	561.0	f1_c57bl6.idr	intron (NM_022410, intron 1 of 40)	intron (NM_022410, intron 1 of 40)	7698.0	NM_022410	17886.0	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-46035289-3	chr11	46035195	46035395	+	959.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER119|DNA|hAT-Charlie	-19207.0	NM_001291890	11492.0	Mm.89940	NM_009616	ENSMUSG00000011256	Adam19	AL024287|MADDAM|MTLNB|Mltnb	a disintegrin and metallopeptidase domain 19 (meltrin beta)	protein-coding	3.3734335553616	3.38480863256249	3.26958313694944	2.26155302718943	1.84881672353071	1.33260374394304	1.28573650174797	1.95764760561168	-3.27719592791441	0.00035212945056378	0.00833851805499521
Merged-chr12-102292734-2	chr12	102292634	102292834	+	697.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161365, intron 1 of 9)	intron (NM_001161365, intron 1 of 9)	9093.0	NM_001161365	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-99213976-3	chr5	99213894	99214094	+	958.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38933.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-44002927-2	chr16	44002827	44003027	+	794.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359085, intron 8 of 16)	intron (NM_001359085, intron 8 of 16)	-10925.0	NR_037302	100499519.0		NR_037302	ENSMUSG00000093912	Mir3470b	mmu-mir-3470b	microRNA 3470b	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-120511152-4	chr5	120511065	120511265	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133221)	promoter-TSS (NM_133221)	-27.0	NM_001177595	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131702612-3	chr1	131702467	131702667	+	730.799988	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311096, intron 4 of 4)	intron (NM_001311096, intron 4 of 4)	13872.0	NM_145509	226421.0	Mm.44508	NM_145509	ENSMUSG00000052688	Rab7b	5430435G22Rik	RAB7B, member RAS oncogene family	protein-coding	3.37333305887148	4.25998317398908	3.17099536339884	3.41346847645862	2.49458960414341	3.49432478643287	2.56912067220007	2.48358282003805	-1.29913467391134	0.0418221983910378	0.29270029495869
Merged-chr3-67576454-4	chr3	67576339	67576539	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6329.0	NM_025813	66868.0	Mm.491153	NM_025813	ENSMUSG00000027775	Mfsd1	1200003O06Rik	major facilitator superfamily domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-23804875-4	chr17	23804651	23804851	+	968.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175229, intron 1 of 13)	intron (NM_175229, intron 1 of 13)	1564.0	NM_175229	75956.0	Mm.5222	NM_175229	ENSMUSG00000039218	Srrm2	5033413A03Rik|AA410130|SRm300|mKIAA0324	serine/arginine repetitive matrix 2	protein-coding	1.89300762866963	1.44167354902557	1.67153100230161	1.73265978467206	1.3138444825295	1.60814733945013	1.02575217010067	1.50986373841959	-1.13180126372659	0.325010544776266	0.827680030329483
Merged-chr7-43465557-4	chr7	43465461	43465661	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290316, intron 4 of 9)	intron (NM_001290316, intron 4 of 9)	2328.0	NM_001290316	75690.0	Mm.30200	NM_001290316	ENSMUSG00000070604	Vsig10l	-	V-set and immunoglobulin domain containing 10 like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-113752453-4	chr6	113752348	113752548	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001036684, intron 19 of 19)	intron (NM_001036684, intron 19 of 19)	-11767.0	NM_024206	110379.0	Mm.29296	NM_024206	ENSMUSG00000030298	Sec13	1110003H02Rik|Sec13l1|Sec13r	SEC13 homolog, nuclear pore and COPII coat complex component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-60676112-2	chr13	60676061	60676261	+	890.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	73950.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	-0.178732894770167	-0.165082558307397	0.271554881761667	-0.173019855362327	-0.177884408462849	0.322025286946463	0.280719004563031	-0.172417396733351	1.13189990468618	0.636462842883931	1
Merged-chr12-103425134-2	chr12	103425034	103425234	+	908.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_020494, intron 1 of 8)	ID_B1|SINE|B4	646.0	NM_001159502	27225.0	Mm.3935	NM_020494	ENSMUSG00000041645	Ddx24	1700055J08Rik|2510027P10Rik|AI649272	DEAD (Asp-Glu-Ala-Asp) box polypeptide 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-93459482-4	chr2	93459404	93459604	+	999.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040532, intron 2 of 4)	intron (NR_040532, intron 2 of 4)	2347.0	NM_001271461	12521.0	Mm.4261	NM_007656	ENSMUSG00000027215	Cd82	AA682076|AL023070|C33|IA4|Kai1|Tspan27	CD82 antigen	protein-coding	3.64278462846269	3.28096577157582	2.65581659752445	3.50968504542458	3.77557893876755	3.50462470462158	3.1949749423739	3.78727821774336	0.405243926451097	0.46830306541251	0.924409990887115
Merged-chr3-81926071-4	chr3	81925972	81926172	+	961.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6529.0	NM_177662	229445.0	Mm.254642	NM_177662	ENSMUSG00000028015	Ctso	A330105D01Rik|AI118514	cathepsin O	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-137865513-1	chr4	137865413	137865613	+	942.0	f1_balb.idr	intron (NM_199307, intron 1 of 19)	intron (NM_199307, intron 1 of 19)	3276.0	NM_199307	230857.0	Mm.401062	NM_199307	ENSMUSG00000057530	Ece1	AW322500|ECE-1|ECE-1a|ECE-1b|ECE-1d	endothelin converting enzyme 1	protein-coding	2.29775022875014	3.27710698287874	2.36164330445702	1.41067341533827	2.17640658615626	3.84462019434757	2.79521104818713	3.5592245762138	1.30034383841102	0.110102714769669	0.520083610947438
Merged-chr10-25450516-2	chr10	25450416	25450616	+	707.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358754, intron 3 of 16)	intron (NM_001358754, intron 3 of 16)	42148.0	NM_013511	13822.0	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-27025188-2	chr8	27025088	27025288	+	604.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153592, intron 2 of 11)	intron (NM_153592, intron 2 of 11)	1389.0	NM_153592	244373.0	Mm.277699	NM_153592	ENSMUSG00000031483	Erlin2	BC036333|C87251|Spfh2	ER lipid raft associated 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-99203393-4	chr10	99203287	99203487	+	999.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59844.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118596671-2	chr9	118596571	118596771	+	757.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10038.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-44420027-4	chr13	44419941	44420141	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19686.0	NR_045489	69491.0	Mm.392410	NR_045489	ENSMUSG00000098144	1700029N11Rik	-	RIKEN cDNA 1700029N11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-94602778-3	chr16	94602681	94602881	+	942.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113389, intron 1 of 11)	intron (NM_001113389, intron 1 of 11)	-8638.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-99181561-2	chr9	99181461	99181661	+	913.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F1|SINE|Alu	-41350.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-137510295-4	chr5	137510187	137510387	+	968.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CGG)n|Simple_repeat|Simple_repeat	-7858.0	NM_028753	74097.0	Mm.290242	NM_028753	ENSMUSG00000029715	Pop7	0610037N12Rik|AI852017|Rpp20	processing of precursor 7, ribonuclease P family, (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-151601548-4	chr1	151601449	151601649	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022018, intron 1 of 13)	intron (NM_022018, intron 1 of 13)	30176.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-11067571-2	chr16	11067471	11067671	+	550.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009223, intron 1 of 1)	intron (NM_009223, intron 1 of 1)	1273.0	NM_009223	20621.0	Mm.325800	NM_009223	ENSMUSG00000037972	Snn	2810407J07Rik|AI848521|AW547286	stannin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106354281-3	chr11	106354174	106354374	+	818.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4884.0	NM_133199	110880.0	Mm.432528	NM_133199	ENSMUSG00000001027	Scn4a	Nav1.4|SkM1|mH2	sodium channel, voltage-gated, type IV, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118599932-4	chr9	118599820	118600020	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	-6789.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-84449621-3	chr1	84449499	84449699	+	609.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152915, intron 7 of 12)	intron (NM_152915, intron 7 of 12)	-164954.0	NM_001003948	98496.0	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4|P-CLI1	phosphotyrosine interaction domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-101760462-4	chr13	101760366	101760566	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077495, intron 1 of 15)	intron (NM_001077495, intron 1 of 15)	7751.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	2.5280893990274	2.67794360635972	2.29892631899184	1.268590511259	2.13619119422173	1.98554942464994	1.74965591594212	2.00671786778436	-0.802114753860593	0.404054872149835	0.889123345574356
Merged-chr10-81126675-2	chr10	81126575	81126775	+	996.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-9596.0	NM_010731	16969.0	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-94223247-5	chr16	94223170	94223370	+	965.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360045, intron 6 of 10)	intron (NM_001360045, intron 6 of 10)	67021.0	NM_001360045	110948.0	Mm.30921	NM_139145	ENSMUSG00000040820	Hlcs	410I21.SP6|D16Jhu34	holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-5064103-2	chr11	5064003	5064203	+	593.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001190406, exon 2 of 5)	exon (NM_001190406, exon 2 of 5)	1224.0	NM_144560	78926.0	Mm.44591	NM_030228	ENSMUSG00000034201	Gas2l1	4930500E24Rik|D0Jmb1|Gar22|TU-71.1	growth arrest-specific 2 like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107544448-1	chr9	107544348	107544548	+	689.0	f1_c57bl6.idr	exon (NM_018879, exon 6 of 11)	exon (NM_018879, exon 6 of 11)	2239.0	NM_018879	56032.0	Mm.11337	NM_018879	ENSMUSG00000010057	Nprl2	2810446G01Rik|G21|NPR2L|Tusc4	nitrogen permease regulator-like 2	protein-coding	1.57669033192266	1.26195952454576	0.523371700191622	0.513628630668279	0.499587922538079	0.776680440415929	0.526129162221384	1.47107203374315	-0.667030166072654	0.695299032825101	0.997870549741095
Merged-chr7-27673737-5	chr7	27673647	27673847	+	887.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198417)	promoter-TSS (NM_198417)	834.0	NM_001290528	269881.0	Mm.389883	NM_001081292	ENSMUSG00000040390	Map3k10	BC028668|BC046514|MST|Mlk2	mitogen-activated protein kinase kinase kinase 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-172370235-3	chr1	172370174	172370374	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001039484, exon 2 of 2)	3' UTR (NM_001039484, exon 2 of 2)	-6257.0	NM_026234	67556.0	Mm.26612	NM_026234	ENSMUSG00000050229	Pigm	4933437L05Rik|AI644422|AV302080|C920011G20Rik	phosphatidylinositol glycan anchor biosynthesis, class M	protein-coding	2.7710320747789	1.36777885023356	2.3225270862727	1.95593050653965	2.01600939830441	1.66938634740348	3.10627397300013	3.30752876145426	1.00106430044155	0.281775498891252	0.784516344917368
Merged-chr8-94199303-2	chr8	94199203	94199403	+	951.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4|SINE|ID	-15261.0	NM_001357266	71805.0	Mm.458170	NM_172410	ENSMUSG00000032939	Nup93	2410008G02Rik	nucleoporin 93	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-97205637-2	chr7	97205537	97205737	+	653.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162477, intron 1 of 9)	Lx3_Mus|LINE|L1	120327.0	NM_001177412	244144.0	Mm.297541	NM_001177412	ENSMUSG00000035713	Usp35	Gm1088|Gm493	ubiquitin specific peptidase 35	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-30390757-4	chr16	30390661	30390861	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2231.0	NM_001128096	224088.0	Mm.8924	NM_001128094	ENSMUSG00000022533	Atp13a3	AU022875|Gm1745|Gm541|Gm542	ATPase type 13A3	protein-coding	1.7969119983825	2.2604746313541	2.07060185357266	1.19414000169527	2.28423060244261	2.16008987358091	2.08703596551973	1.42155096678528	0.371411643714571	0.718762100419971	0.998431161219273
Merged-chr4-152029141-4	chr4	152028985	152029185	+	870.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031867, intron 5 of 5)	intron (NM_031867, intron 5 of 5)	-1414.0	NM_133879	100090.0	Mm.24661	NM_133879	ENSMUSG00000028952	Zbtb48	0610011D15Rik|AI327031|Hkr3|TZAP	zinc finger and BTB domain containing 48	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-120012902-4	chr9	120012753	120012953	+	794.99585	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011724)	TTS (NM_011724)	10745.0	NM_011724	22437.0	Mm.10117	NM_011724	ENSMUSG00000079243	Xirp1	AI415219|Cmya1	xin actin-binding repeat containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-8165740-4	chr17	8165644	8165844	+	985.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201230, intron 1 of 11)	CpG	226.0	NM_201230	75296.0	Mm.227250	NM_201230	ENSMUSG00000069135	Fgfr1op	4930553O10Rik|FOP	Fgfr1 oncogene partner	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-58265641-2	chr9	58265541	58265741	+	819.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12477.0	NM_026942	69106.0	Mm.216502	NM_026942	ENSMUSG00000032333	Stoml1	1810015E19Rik|AI847431|SLP1|STORP|UNC24|WPB72	stomatin-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-107785443-4	chr3	107785351	107785551	+	836.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24982.0	NM_001113529	12977.0	Mm.795	NM_007778	ENSMUSG00000014599	Csf1	C87615|Csfm|MCSF|op	colony stimulating factor 1 (macrophage)	protein-coding	-1.2276735044944	-1.20138836966063	-1.21202761258731	-1.2207670035018	-1.22721880906488	-1.19908280133575	-0.751884428580139	-1.05459659029088	2.53706087379056	0.440403192504846	1
Merged-chr5-102000468-2	chr5	102000368	102000568	+	672.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 3 of 66)	Tigger5|DNA|TcMar-Tigger	69453.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-13424718-4	chr1	13424619	13424819	+	975.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-50636.0	NM_008678	17978.0	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-63905330-4	chr7	63905250	63905450	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021366, intron 1 of 1)	L1MC3|LINE|L1	-11507.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96244789-3	chr3	96244693	96244893	+	941.2000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013549)	promoter-TSS (NM_013549)	-664.0	NM_178212	319192.0	Mm.5220	NM_178212	ENSMUSG00000063954	Hist2h2aa2	H2a-614|H2a-615	histone cluster 2, H2aa2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-25522668-4	chr9	25522546	25522746	+	846.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 2 of 7)	MIR|SINE|MIR	41049.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141832427-4	chr4	141832339	141832539	+	921.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-6434.0	NM_007919	13706.0	Mm.45316	NM_007919	ENSMUSG00000058579	Cela2a	Ela-2|Ela2|Ela2a	chymotrypsin-like elastase family, member 2A	protein-coding	5.40385773347674	4.94518145193682	4.98580380972088	4.86265804199688	4.00983933010208	3.32694381906779	4.21677736169551	4.21103202519409	-1.35322560484014	0.000432806462735169	0.00996487931342802
Merged-chr11-29808119-2	chr11	29808019	29808219	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146016, intron 17 of 41)	intron (NM_146016, intron 17 of 41)	17549.0	NM_176829	216622.0	Mm.443260	NM_176829	ENSMUSG00000078157	4931440F15Rik	Fem1ab	RIKEN cDNA 4931440F15 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-113156239-4	chr12	113156152	113156352	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134041)	promoter-TSS (NM_134041)	-169.0	NM_134041	104732.0	Mm.87616	NM_134041	ENSMUSG00000037466	Tedc1	4930427A07Rik|AA536649|mFLJ00116	tubulin epsilon and delta complex 1	protein-coding	4.90805442785125	5.3917825781005	4.77627966267915	5.23074196924443	4.91254904629687	4.9624372720232	5.36495871135352	5.3392417392638	0.0774508821673173	0.804875522056967	0.998431161219273
Merged-chr18-32644385-2	chr18	32644285	32644485	+	857.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-84351.0	NM_001347610	71683.0	Mm.292145	NM_027863	ENSMUSG00000090523	Gypc	0610037F22Rik|Cd236r	glycophorin C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-3264373-3	chr8	3264256	3264456	+	740.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001330056, intron 1 of 21)	Lx7|LINE|L1	15261.0	NM_010568	16337.0	Mm.268003	NM_010568	ENSMUSG00000005534	Insr	4932439J01Rik|CD220|D630014A15Rik|IR|IR-A|IR-B	insulin receptor	protein-coding	1.78364386167956	2.5150739732248	1.06434226388795	2.27207921649315	1.55270007822366	1.09377486148662	1.51723177343328	1.89740887891764	-1.33481272817399	0.241881111256351	0.739072047416053
Merged-chr2-29649417-4	chr2	29649300	29649500	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054050, intron 1 of 23)	intron (NM_054050, intron 1 of 23)	29680.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-151969543-3	chr2	151969402	151969602	+	888.7666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001289151, exon 2 of 2)	3' UTR (NM_001289151, exon 2 of 2)	-1885.0	NR_035478	100316704.0		NR_035478	ENSMUSG00000088491	Mir1953	mir-1953|mmu-mir-1953	microRNA 1953	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-9188331-1	chr13	9188231	9188431	+	544.0	f1_c57bl6.idr	Intergenic	Intergenic	-88194.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-12035361-3	chr10	12035263	12035463	+	752.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	426139.0	NM_013898	30058.0	Mm.214504	NM_013898	ENSMUSG00000048007	Timm8a1	DXHXS1274E|Ddp1|Fci-12|Tim8a|Timm8a	translocase of inner mitochondrial membrane 8A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139325621-4	chr5	139325518	139325718	+	998.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172723)	promoter-TSS (NM_172723)	-154.0	NM_172723	231821.0	Mm.297819	NM_172723	ENSMUSG00000056413	Adap1	4930431P11Rik|Centa1|GC1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4191083-2	chr19	4190983	4191183	+	998.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178650)	promoter-TSS (NM_178650)	-36.0	NM_178650	108995.0	Mm.288312	NM_178650	ENSMUSG00000040247	Tbc1d10c	1810062O14Rik|AI428527	TBC1 domain family, member 10c	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-31090187-4	chr3	31090076	31090276	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4882.0	NM_001039090	20482.0	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-45056233-2	chr2	45056133	45056333	+	799.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355291, intron 2 of 9)	intron (NM_001355291, intron 2 of 9)	-33056.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-181921698-3	chr1	181921599	181921799	+	904.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010135, exon 7 of 15)	exon (NM_010135, exon 7 of 15)	-79298.0	NM_133815	98386.0	Mm.4538	NM_133815	ENSMUSG00000004880	Lbr	AI505894|ic	lamin B receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-25498597-4	chr5	25498485	25498685	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001081383, exon 1 of 59)	5' UTR (NM_001081383, exon 1 of 59)	198.0	NM_001081383	231051.0	Mm.332268	NM_001081383	ENSMUSG00000038056	Kmt2c	E330008K23Rik|HALR|Mll3|mKIAA1506	lysine (K)-specific methyltransferase 2C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-36897941-2	chr19	36897841	36898041	+	896.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	21658.0	NM_028263	72514.0	Mm.41674	NM_028263	ENSMUSG00000047632	Fgfbp3	2610306H15Rik|Fgf-bp3	fibroblast growth factor binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-118596665-2	chr10	118596565	118596765	+	895.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40140.0	NR_104123	103214.0	Mm.30529	NR_104123	ENSMUSG00000112230	Ifngas1	AI447422|Tmevpg1	Ifng antisense RNA 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-25281477-2	chr10	25281377	25281577	+	862.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_018747, intron 3 of 7)	intron (NM_018747, intron 3 of 7)	17686.0	NM_018747	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-138014326-4	chr4	138014231	138014431	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355699, intron 1 of 32)	intron (NM_001355699, intron 1 of 32)	16506.0	NM_001355700	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	3.92213487503181	4.77293416666306	4.05427355530292	4.8509265598861	5.34301267088457	5.8457029129219	5.63813190460717	6.11814352436642	1.53405384136554	6.13624360620994e-06	0.000305911291360001
Merged-chr16-57347906-4	chr16	57347798	57347998	+	928.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025599, intron 1 of 9)	intron (NM_025599, intron 1 of 9)	-5379.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-62842713-4	chr14	62842608	62842808	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175546, intron 1 of 11)	intron (NM_175546, intron 1 of 11)	4987.0	NR_106174	102465889.0		NR_106174	ENSMUSG00000099245	Mir8098	Gm27462|mmu-mir-8098	microRNA 8098	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-45089259-1	chr13	45089159	45089359	+	564.0	f0_c57.idr	Intergenic	Intergenic	-87163.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-39620062-4	chr18	39619967	39620167	+	984.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-132822.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-10547735-2	chr16	10547635	10547835	+	885.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_177562, intron 1 of 22)	intron (NM_177562, intron 1 of 22)	2396.0	NM_001204229	74374.0	Mm.159176	NM_177562	ENSMUSG00000068663	Clec16a	4932416N17Rik|curt|mKIAA0350	C-type lectin domain family 16, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-59058150-1	chr4	59058050	59058250	+	650.0	f0_balb.idr	Intergenic	Intergenic	22994.0	NM_025277	14700.0	Mm.41780	NM_025277	ENSMUSG00000038607	Gng10	AV006524	guanine nucleotide binding protein (G protein), gamma 10	protein-coding	0.110206941449733	-0.142599792114096	-0.147558872135664	-0.151385639709818	-0.156794842657666	-0.141482046387439	0.318729248683244	0.576740829024464	2.30925466339792	0.330699786014775	1
Merged-chr7-80323418-2	chr7	80323318	80323518	+	781.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173445, intron 1 of 8)	intron (NM_173445, intron 1 of 8)	1036.0	NM_173445	269955.0	Mm.474502	NM_173445	ENSMUSG00000038930	Rccd1	5830436H09|E430018M08Rik	RCC1 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-35030112-2	chr7	35030012	35030212	+	658.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_008820, intron 11 of 14)	intron (NM_008820, intron 11 of 14)	26454.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-59822711-4	chr13	59822617	59822817	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153538, intron 1 of 27)	CpG	430.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-13968976-4	chr13	13968875	13969075	+	733.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362405, intron 2 of 12)	intron (NM_001362405, intron 2 of 12)	14301.0	NM_178640	97884.0	Mm.21686	NM_178640	ENSMUSG00000039242	B3galnt2	A930105D20Rik|C80633|D230016N13Rik	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-134066277-3	chr1	134066191	134066391	+	903.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TCC)n|Simple_repeat|Simple_repeat	12864.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-181881772-4	chr1	181881695	181881895	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39394.0	NM_133815	98386.0	Mm.4538	NM_133815	ENSMUSG00000004880	Lbr	AI505894|ic	lamin B receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-8882718-2	chr10	8882618	8882818	+	999.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 1 of 19)	intron (NM_175155, intron 1 of 19)	3352.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-57103154-3	chr2	57103082	57103282	+	780.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11856.0	NM_013613	18227.0	Mm.3507	NM_013613	ENSMUSG00000026826	Nr4a2	HZF-3|NOT|Nurr1|RNR-1|TINOR|TINUR	nuclear receptor subfamily 4, group A, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-72268519-4	chr8	72268417	72268617	+	957.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28499.0	NM_007456	11767.0	Mm.290086	NM_007456	ENSMUSG00000003033	Ap1m1	AA408894|AP47|Adtm1A|Cltnm|mu1A	adaptor-related protein complex AP-1, mu subunit 1	protein-coding	3.74381549663816	2.92499121740275	3.36357508374007	3.80983704115086	5.12043546530113	5.22798585705656	5.39685253784788	4.61100202215218	2.05029033536244	9.00884049431917e-07	5.96531907505086e-05
Merged-chr15-41861181-4	chr15	41861092	41861292	+	993.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_130885)	TTS (NM_130885)	8528.0	NM_175456	223513.0	Mm.148913	NM_175456	ENSMUSG00000042895	Abra	C130068O12Rik|STARS	actin-binding Rho activating protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-110628484-2	chr7	110628384	110628584	+	865.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_009627, intron 2 of 3)	intron (NM_009627, intron 2 of 3)	827.0	NM_009627	11535.0	Mm.1408	NM_009627	ENSMUSG00000030790	Adm	AM	adrenomedullin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19119785-4	chr7	19119681	19119881	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175530)	promoter-TSS (NM_175530)	-78.0	NM_175530	243867.0	Mm.230830	NM_175530	ENSMUSG00000050428	Fbxo46	20D7-FC4|4932704E22Rik|Fbxo34l	F-box protein 46	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-143704542-2	chr5	143704442	143704642	+	843.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011182, intron 9 of 12)	intron (NM_011182, intron 9 of 12)	27738.0	NM_029749	76800.0	Mm.259620	NM_029749	ENSMUSG00000051306	Usp42	2410140K03Rik|3110031A07Rik|A630018G05Rik|D5Ertd591e	ubiquitin specific peptidase 42	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-121943780-3	chr5	121943689	121943889	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007804, intron 2 of 22)	intron (NM_007804, intron 2 of 22)	94792.0	NM_001359949	231717.0	Mm.12654	NM_175474	ENSMUSG00000044134	Fam109a	A230106M15Rik|AU017694|IPIP27A|Ses1	family with sequence similarity 109, member A	protein-coding	1.86450872396715	1.9067677749762	2.32809192993917	1.32111615872313	3.14388465767813	2.43136821504001	2.47325566750134	3.1315383842837	2.09057661505452	0.0156899072541222	0.149967847888438
Merged-chr3-104715156-4	chr3	104715046	104715246	+	785.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	62401.0	NM_183224	329731.0	Mm.389494	NM_183224	ENSMUSG00000055865	Fam19a3	7530404M11Rik|Sam3|TAFA3|Tafa-3	family with sequence similarity 19, member A3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-103209528-1	chr9	103209428	103209628	+	693.0	f1_c57bl6.idr	intron (NM_133977, intron 16 of 16)	intron (NM_133977, intron 16 of 16)	-7463.0	NM_009275	20818.0	Mm.273053	NM_009275	ENSMUSG00000032553	Srprb	AA409543	signal recognition particle receptor, B subunit	protein-coding	-1.18378942727406	-1.15669478905697	-0.457913181653105	-1.17806440097404	-1.18323730008524	-1.15415234459186	-1.16577117532349	-1.17633933179771	-2.81844548480871	0.412768592413622	1
Merged-chr18-31701394-4	chr18	31701284	31701484	+	887.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172965, intron 16 of 20)	RMER3D-int|LTR|ERVK	-58440.0	NM_153515	225339.0	Mm.290804	NM_153515	ENSMUSG00000041915	Ammecr1l	5430429D03Rik|AU022236|AU040755|AW111353|E230022H04Rik	AMME chromosomal region gene 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-79347881-3	chr12	79347778	79347978	+	935.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	50527.0	NM_001252562	19363.0	Mm.341756	NM_009014	ENSMUSG00000059060	Rad51b	AI553500|R51H2|Rad51l1|mREC2	RAD51 paralog B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-139293750-3	chr4	139293590	139293790	+	800.255554	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_151463)	TTS (NR_151463)	17018.0	NR_151463	212555.0	Mm.45131	NM_145384	ENSMUSG00000028744	Pqlc2	BC019216	PQ loop repeat containing 2	protein-coding	1.5504647462	3.14670480991097	2.17013442057731	1.8152943963191	2.00528312997852	1.23961906332535	2.78950623861892	1.64616821773011	-0.594276432080573	0.55683952208141	0.960321604678676
Merged-chr4-107881353-2	chr4	107881253	107881453	+	705.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001282737, intron 2 of 4)	intron (NM_001282737, intron 2 of 4)	1598.0	NM_001282737	17149.0	Mm.808	NM_001282737	ENSMUSG00000028609	Magoh	Mago-m|Mos2	mago homolog, exon junction complex core component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-84218427-4	chr12	84218306	84218506	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163501, intron 1 of 12)	CpG	475.0	NM_001163501	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-73123552-2	chr14	73123452	73123652	+	742.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-18958.0	NM_001170694	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-92286639-3	chr6	92286557	92286757	+	801.277771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42007.0	NM_009426	22044.0	Mm.1363	NM_009426	ENSMUSG00000005892	Trh	Pro-TRH|Trf	thyrotropin releasing hormone	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-113493193-4	chr13	113493094	113493294	+	943.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045501, intron 1 of 6)	intron (NR_045501, intron 1 of 6)	9650.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70201854-2	chr11	70201754	70201954	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12056.0	NM_153081	216867.0	Mm.289238	NM_153081	ENSMUSG00000040938	Slc16a11	AB041591|MCT 11|MNCb-2717	solute carrier family 16 (monocarboxylic acid transporters), member 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-56522407-4	chr13	56522297	56522497	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346732)	promoter-TSS (NM_001346732)	-75.0	NM_178674	213311.0	Mm.233904	NM_178674	ENSMUSG00000035509	Fbxl21	D630045D17Rik|FBL3B|FBXL3B|Psttm	F-box and leucine-rich repeat protein 21	protein-coding	-1.01141362372852	-0.989706134456912	-1.00316642475632	-1.00675598761451	-1.01071814941888	-0.986789233398088	-1.0001193100737	-0.11057046896199	3.2289113956799	0.314019726092946	1
Merged-chr13-19874982-1	chr13	19874882	19875082	+	903.6666869999999	f0_balb.idr	Intergenic	Lx8b|LINE|L1	-50725.0	NM_181754	353346.0	Mm.239268	NM_181754	ENSMUSG00000053101	Gpr141	PGR13	G protein-coupled receptor 141	protein-coding	1.25174317680187	0.933603367292591	0.910601600277561	1.63009508862685	1.77405034818002	2.63196741817441	1.16981157791129	1.76601510762803	2.24909903118554	0.0655423366217882	0.383349181729712
Merged-chr19-16404573-4	chr19	16404469	16404669	+	981.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-31098.0	NM_008137	14675.0	Mm.313181	NM_008137	ENSMUSG00000024697	Gna14	AU023208	guanine nucleotide binding protein, alpha 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-42908918-4	chr9	42908819	42909019	+	993.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175481, intron 1 of 20)	intron (NM_175481, intron 1 of 20)	35452.0	NM_175481	110637.0	Mm.370291	NM_175481	ENSMUSG00000032017	Grik4	6330551K01Rik|GluK4|GluRgamma1|KA-1|KA1	glutamate receptor, ionotropic, kainate 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-110852170-3	chr12	110852073	110852273	+	785.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028365, intron 1 of 7)	intron (NM_028365, intron 1 of 7)	1894.0	NM_028365	72805.0	Mm.443524	NM_028365	ENSMUSG00000021271	Zfp839	2810455K09Rik	zinc finger protein 839	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-21955509-4	chr6	21955433	21955633	+	949.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311061, intron 4 of 11)	Lx8|LINE|L1	5918.0	NM_023626	71777.0	Mm.39999	NM_023626	ENSMUSG00000029670	Ing3	1300013A07Rik|P47ING3	inhibitor of growth family, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141461945-5	chr7	141461857	141462057	+	865.033325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_152220, exon 2 of 2)	non-coding (NR_152220, exon 2 of 2)	863.0	NM_001025103	213573.0	Mm.386851	NM_001025103	ENSMUSG00000048200	Cracr2b	6330520A15Rik|BC026645|Cracr2a|Efcab4|Efcab4a	calcium release activated channel regulator 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44249709-4	chr9	44249626	44249826	+	726.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_133226, exon 6 of 11)	exon (NM_133226, exon 6 of 11)	1738.0	NM_133226	170761.0	Mm.29872	NM_133226	ENSMUSG00000032105	Pdzd3	NaPi-Cap2|Pdzk2	PDZ domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-54569237-3	chr1	54569089	54569289	+	639.277771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11505.0	NM_001163314	241062.0	Mm.103539	NM_175508	ENSMUSG00000073678	Pgap1	5033403E17Rik|9030223K07Rik|A530084K22|D230012E17Rik|oto	post-GPI attachment to proteins 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-4079392-3	chr10	4079299	4079499	+	953.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170785, intron 20 of 27)	intron (NM_001170785, intron 20 of 27)	106324.0	NM_172308	270685.0	Mm.184752	NM_172308	ENSMUSG00000040675	Mthfd1l	2410004L15Rik|AI647056|Fthfsdc1	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-118855336-3	chr12	118855223	118855423	+	641.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8994.0	NM_177082	320145.0	Mm.51682	NM_177082	ENSMUSG00000048562	Sp8	D930049B17Rik|mBtd	trans-acting transcription factor 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-142522799-2	chr6	142522699	142522899	+	571.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14842.0	NM_001316322	16832.0	Mm.9745	NM_008492	ENSMUSG00000030246	Ldhb	AI790582|H-Ldh|LDH-B|LDH-H|Ldh-2|Ldh2	lactate dehydrogenase B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-119663627-3	chr4	119663533	119663733	+	960.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	-4688.0	NM_008191	14916.0	Mm.278	NM_008191	ENSMUSG00000032978	Guca2b	AV066530|Gcap2|Ugn	guanylate cyclase activator 2b (retina)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-91845568-2	chr12	91845468	91845668	+	962.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039089, intron 1 of 20)	intron (NM_001039089, intron 1 of 20)	3589.0	NM_001039089	20338.0	Mm.250605	NM_011344	ENSMUSG00000020964	Sel1l	AW493766|Sel1h|mKIAA4137	sel-1 suppressor of lin-12-like (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-109596002-2	chr8	109595902	109596102	+	796.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_020046, intron 5 of 8)	intron (NM_020046, intron 5 of 8)	12671.0	NM_020046	56749.0	Mm.23894	NM_020046	ENSMUSG00000031730	Dhodh	2810417D19Rik|AI834883	dihydroorotate dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-68385961-2	chr2	68385861	68386061	+	646.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016866, intron 5 of 17)	intron (NM_016866, intron 5 of 17)	86020.0	NM_016866	53416.0	Mm.198414	NM_016866	ENSMUSG00000027030	Stk39	AW227544|AW556857|DCHT|RF005|Rnl5|SPAK	serine/threonine kinase 39	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-66950644-2	chr10	66950544	66950744	+	988.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30260.0	NR_138561	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-32539313-3	chr6	32539207	32539407	+	729.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175750, intron 1 of 31)	intron (NM_175750, intron 1 of 31)	28166.0	NR_040277	319849.0	Mm.440860	NR_040277	ENSMUSG00000086763	Plxna4os1	B230378P21Rik	plexin A4, opposite strand 1	ncRNA	1.95231517667293	1.07403296854934	1.05130103156378	1.25814051827981	1.87647062212897	2.1245414194485	1.6624541142044	2.40092295615852	1.91382719146814	0.0981588083152037	0.487193621966001
Merged-chr6-129581520-2	chr6	129581420	129581620	+	578.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153590, intron 2 of 6)	intron (NM_153590, intron 2 of 6)	3234.0	NM_153590	243655.0	Mm.30968	NM_153590	ENSMUSG00000050241	Klre1	Klre-1|NKG2I	killer cell lectin-like receptor family E member 1	protein-coding	-1.56355737717652	-1.81244775989375	-1.82128546162293	-1.82854501295842	-1.83962066705452	-1.81053259306168	-1.81928479966835	-1.82724555674025	-1.28500227969968	0.715751224811686	1
Merged-chr16-4876247-2	chr16	4876147	4876347	+	787.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145359, intron 2 of 2)	intron (NM_145359, intron 2 of 2)	3604.0	NM_145359	207740.0	Mm.268895	NM_145359	ENSMUSG00000039568	Ubald1	1500031H01Rik|BC013706|Fam100a	UBA-like domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-6547183-3	chr11	6547096	6547296	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001190343, intron 1 of 8)	CpG	309.0	NM_001190343	216527.0	Mm.221271	NM_146014	ENSMUSG00000000378	Ccm2	BC029157	cerebral cavernous malformation 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118160638-2	chr11	118160538	118160738	+	651.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F2|SINE|Alu	-31419.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70332827-2	chr8	70332727	70332927	+	632.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030680, intron 22 of 23)	intron (NM_030680, intron 22 of 23)	3062.0	NM_008107	14559.0	Mm.258280	NM_008107	ENSMUSG00000087408	Gdf1	AI385651|Gdf-1	growth differentiation factor 1	protein-coding	1.2555280481483	0.332707382666223	0.323469752814244	0.316263339610464	1.04412193153551	1.03118556651044	0.325516944427028	0.317527441020181	0.423360130433894	0.829178406405493	1
Merged-chr12-77324289-2	chr12	77324189	77324389	+	602.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045554, intron 3 of 11)	intron (NR_045554, intron 3 of 11)	-64575.0	NM_001252615	53618.0	Mm.35628	NM_016893	ENSMUSG00000021065	Fut8	-	fucosyltransferase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-34206611-4	chr10	34206516	34206716	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172508, intron 1 of 5)	intron (NM_172508, intron 1 of 5)	935.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126467409-2	chr7	126467309	126467509	+	630.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_110346, exon 10 of 10)	non-coding (NR_110346, exon 10 of 10)	-4336.0	NM_007504	11937.0	Mm.35134	NM_007504	ENSMUSG00000030730	Atp2a1	SERCA1	ATPase, Ca++ transporting, cardiac muscle, fast twitch 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-64933214-4	chr1	64933162	64933362	+	888.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039493, intron 2 of 7)	intron (NM_001039493, intron 2 of 7)	23562.0	NM_001039493	241075.0	Mm.239534	NM_175509	ENSMUSG00000051344	Plekhm3	9430067K14Rik|A230102O09Rik|AI449570|DAPR|Plekhm1l	pleckstrin homology domain containing, family M, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-120020632-4	chr1	120020549	120020749	+	968.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001012322, intron 1 of 13)	MTD|LTR|ERVL-MaLR	13669.0	NM_001012322	319229.0	Mm.189223	NM_001012322	ENSMUSG00000026387	Sctr	6530402O03Rik	secretin receptor	protein-coding	4.20299099572255	4.06083906472897	3.6211332676717	3.88830681146687	4.10237202049322	4.22157529695717	3.35586761475522	4.24418530467425	0.0891390974496118	0.846817113769331	0.998431161219273
Merged-chr6-54958137-4	chr6	54958022	54958222	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172729, intron 1 of 11)	intron (NM_172729, intron 1 of 11)	13539.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-132084337-3	chr3	132084218	132084418	+	848.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020265)	promoter-TSS (NM_020265)	-974.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-96775890-4	chr11	96775809	96776009	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028965, intron 2 of 8)	intron (NM_028965, intron 2 of 8)	1646.0	NM_028965	74479.0	Mm.270781	NM_028965	ENSMUSG00000020876	Snx11	4933439F10Rik|A930041K09Rik|AI117694	sorting nexin 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-51083814-4	chr15	51083714	51083914	+	966.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-193773.0	NM_032000	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-48591064-4	chr4	48590971	48591171	+	919.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021436, intron 1 of 9)	Tigger13a|DNA|TcMar-Tigger	5897.0	NM_021436	230157.0	Mm.422686	NM_021436	ENSMUSG00000028347	Tmeff1	A830033E11|M7365|TR-1|Tr1	transmembrane protein with EGF-like and two follistatin-like domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21961288-2	chr9	21961188	21961388	+	602.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010149, intron 4 of 7)	RSINE1|SINE|B4	2288.0	NM_010149	13857.0	Mm.2653	NM_010149	ENSMUSG00000006235	Epor	-	erythropoietin receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-11439668-4	chr16	11439572	11439772	+	950.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028964, intron 11 of 20)	intron (NM_028964, intron 11 of 20)	34024.0	NM_001290148	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-60851406-4	chr2	60851308	60851508	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	30030.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-29003501-2	chr15	29003401	29003601	+	597.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4A|LINE|L1	709903.0	NR_039542	100628607.0		NR_039542	ENSMUSG00000092639	Mir3964	mmu-mir-3964|mu-mir-3964	microRNA 3964	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28796818-4	chr7	28796709	28796909	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177158, exon 9 of 12)	exon (NM_177158, exon 9 of 12)	7840.0	NM_177158	320435.0	Mm.74632	NM_177158	ENSMUSG00000051735	Rinl	5830482F20Rik|9930116N10Rik	Ras and Rab interactor-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-9334999-4	chr11	9334894	9335094	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178259, intron 26 of 61)	intron (NM_178259, intron 26 of 61)	143052.0	NM_178259	268379.0	Mm.39270	NM_178259	ENSMUSG00000004668	Abca13	9830132L24|A930002G16Rik|AI956815	ATP-binding cassette, sub-family A (ABC1), member 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-66661772-4	chr7	66661686	66661886	+	837.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080443, intron 4 of 5)	B3A|SINE|B2	27775.0	NM_080443	117589.0	Mm.34785	NM_080443	ENSMUSG00000030509	Asb7	AI449039|Asb-7|D030055C23Rik	ankyrin repeat and SOCS box-containing 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-56982348-1	chr1	56982248	56982448	+	704.0	f1_c57bl6.idr	Intergenic	Intergenic	-2100.0	NM_001358580	212712.0	Mm.145599	NM_139146	ENSMUSG00000038331	Satb2	mKIAA1034	special AT-rich sequence binding protein 2	protein-coding	0.908024739572239	0.629640908975489	1.26791527991328	0.608483074090514	0.916330252984948	0.63229122582231	1.28070136563046	1.68414819353625	1.34271621464802	0.382137756624045	0.873396688145393
Merged-chr8-84070379-4	chr8	84070266	84070466	+	998.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009055, intron 1 of 20)	intron (NM_009055, intron 1 of 20)	3530.0	NM_009055	19724.0	Mm.7892	NM_009055	ENSMUSG00000031706	Rfx1	AI047719|AI385641	regulatory factor X, 1 (influences HLA class II expression)	protein-coding	4.62071908361691	4.43378087263941	5.02832433680629	3.77304681667429	4.10805169284274	3.78500656623977	4.80672045930968	4.71439983886798	-0.147889229408451	0.733206190367721	0.998431161219273
Merged-chr18-73572472-4	chr18	73572375	73572575	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039214)	promoter-TSS (NM_001039214)	-230.0	NM_001039214	240396.0	Mm.24131	NM_001039214	ENSMUSG00000037253	Mex3c	A130001D14Rik|BC035207|BM-013|Rkhd2	mex3 RNA binding family member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-63387288-2	chr10	63387188	63387388	+	577.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013888, intron 1 of 4)	intron (NM_013888, intron 1 of 4)	725.0	NM_013888	30045.0	Mm.32550	NM_013888	ENSMUSG00000036764	Dnajc12	Jdp1|mJDP1	DnaJ heat shock protein family (Hsp40) member C12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-24564599-2	chr12	24564499	24564699	+	863.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7688.0	NM_001161406	195733.0	Mm.263068	NM_145890	ENSMUSG00000020656	Grhl1	LBP-32|MGR|Tcfcp2l2	grainyhead like transcription factor 1	protein-coding	-0.311923093211233	-0.622413723570765	-0.624880629076789	-0.367224879776875	-0.629395093946487	-0.621853593308222	-0.339256704752098	-0.626436092660865	-0.990037530114663	0.719397690108006	1
Merged-chr18-34932069-4	chr18	34931984	34932184	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144866)	promoter-TSS (NM_144866)	-81.0	NM_144866	225363.0	Mm.329353	NM_144866	ENSMUSG00000024360	Etf1	AI463371|D6Ertd109e|ERF|ERF1|SUP45L1|TB3-1	eukaryotic translation termination factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-98145658-4	chr15	98145556	98145756	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001170710)	promoter-TSS (NM_001170710)	46.0	NM_030121	78541.0	Mm.200766	NM_030121	ENSMUSG00000048175	Asb8	4930539L19Rik|AI788835|C430011H06Rik	ankyrin repeat and SOCS box-containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53350764-4	chr4	53350674	53350874	+	787.450012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-80542.0	NR_033139	381524.0	Mm.23351	NM_001033454	ENSMUSG00000086712	AI427809	Gm1659	expressed sequence AI427809	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-26425272-3	chr12	26425223	26425423	+	927.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-10061.0	NM_080563	108089.0	Mm.214932	NM_080563	ENSMUSG00000020642	Rnf144a	Rnf144|UIP4|Ubce7ip4	ring finger protein 144A	protein-coding	1.72293410212174	1.71095088788065	1.88332880474866	2.45180289901674	3.44328771187949	2.50682743997461	3.62210004494758	2.33658170955118	2.24993725714158	0.00638289837230903	0.0798517096927167
Merged-chr6-71950367-1	chr6	71950267	71950467	+	763.0	f0_balb.idr	intron (NM_009088, intron 16 of 33)	intron (NM_009088, intron 16 of 33)	41314.0	NM_009088	20019.0	Mm.135581	NM_009088	ENSMUSG00000049553	Polr1a	194kDa|2900087K15Rik|3010014K16Rik|RPA194|Rpo1-4|mRPA1	polymerase (RNA) I polypeptide A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191091563-2	chr1	191091471	191091671	+	687.375	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6843.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81506082-2	chr10	81505982	81506182	+	759.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010304, intron 6 of 6)	intron (NM_010304, intron 6 of 6)	-5945.0	NM_010102	13611.0	Mm.33065	NM_010102	ENSMUSG00000044199	S1pr4	Edg6|Lpc1|S1p4	sphingosine-1-phosphate receptor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-90909411-5	chr8	90909239	90909439	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177224, intron 2 of 39)	CpG	-22910.0	NM_001310530	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	3.0536774979935	2.83007540966543	3.30613119864676	3.28731849910671	2.83904895570598	3.36189272813026	2.87269704039171	1.56616242150944	-0.575365556827101	0.428837307843991	0.903416445927044
Merged-chr5-103680525-4	chr5	103680425	103680625	+	932.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR41|LTR|ERVL	-24793.0	NM_001163550	74218.0	Mm.159141	NM_028824	ENSMUSG00000029320	1700016H13Rik	-	RIKEN cDNA 1700016H13 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-17258060-4	chr11	17257955	17258155	+	992.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001330649, intron 1 of 4)	ID_B1|SINE|B4	367.0	NM_001330649	57316.0	Mm.287982	NM_020558	ENSMUSG00000000581	C1d	1110036E10Rik|AI875855|SUN-CoR	C1D nuclear receptor co-repressor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-21959116-4	chr6	21959049	21959249	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311061, intron 4 of 11)	Lx9|LINE|L1	9534.0	NM_023626	71777.0	Mm.39999	NM_023626	ENSMUSG00000029670	Ing3	1300013A07Rik|P47ING3	inhibitor of growth family, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-18677178-2	chr2	18677058	18677258	+	1000.0	f0_balb.idr|f0_c57.idr	TTS (NM_147778)	TTS (NM_147778)	140.0	NM_007552	12151.0	Mm.289584	NM_007552	ENSMUSG00000026739	Bmi1	AW546694|Bmi-1|Pcgf4	Bmi1 polycomb ring finger oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-149220397-3	chr3	149220271	149220471	+	984.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54366.0	NR_040591	381482.0	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA	0.975433038323447	0.556040342974625	0.543787151507488	0.735249245830104	0.854376369509479	1.71062858694152	0.546509318690935	1.39017643526097	2.27738755067173	0.150273104206012	0.602305959756336
Merged-chr11-22853980-2	chr11	22853880	22854080	+	797.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001169114, intron 1 of 1)	intron (NM_001169114, intron 1 of 1)	5755.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102646310-4	chr12	102646172	102646372	+	937.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172584, intron 2 of 9)	intron (NM_172584, intron 2 of 9)	38748.0	NR_035457	100316812.0		NR_035457	ENSMUSG00000089324	Mir1936	mir-1936|mmu-mir-1936	microRNA 1936	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-79714155-2	chr17	79714055	79714255	+	717.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_009994, exon 2 of 3)	exon (NM_009994, exon 2 of 3)	886.0	NM_009994	13078.0	Mm.214016	NM_009994	ENSMUSG00000024087	Cyp1b1	CP1B|P4501b1	cytochrome P450, family 1, subfamily b, polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-25413744-4	chr14	25413655	25413855	+	905.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45430.0	NM_001310666	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-64690975-6	chr1	64691019	64691219	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_038009)	promoter-TSS (NR_038009)	-226.0	NM_001097644	227210.0	Mm.39706	NM_001097644	ENSMUSG00000070871	Ccnyl1	9630037P07Rik|AW554339	cyclin Y-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70615852-2	chr11	70615788	70615988	+	869.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145537)	promoter-TSS (NM_001145537)	-6.0	NM_001145537	668433.0	Mm.425687	NM_001145537	ENSMUSG00000087279	4930544D05Rik	-	RIKEN cDNA 4930544D05 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81415568-5	chr10	81415453	81415653	+	882.099976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_106141)	TTS (NR_106141)	744.0	NR_106141	102465778.0		NR_106141	ENSMUSG00000105379	Mir1191b	mmu-mir-1191b	microRNA 1191b	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71528811-3	chr8	71528724	71528924	+	881.4722289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8613.0	NM_198095	69550.0	Mm.260325	NM_198095	ENSMUSG00000046718	Bst2	2310015I10Rik|Bst-2|C87040|CD317|DAMP-1|GREG	bone marrow stromal cell antigen 2	protein-coding	2.79099724265654	2.80543747298801	3.96820234605522	4.07178094769468	2.2154086824016	1.56058922537873	2.25095312231154	3.06331464433116	-1.9768284226809	0.00870756895452591	0.0985645811075139
Merged-chr13-91403330-3	chr13	91403197	91403397	+	631.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15212.0	NR_045161	320297.0	Mm.375866	NR_045161	ENSMUSG00000097182	A830009L08Rik	-	RIKEN cDNA A830009L08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-21757008-1	chr14	21756908	21757108	+	571.0	f0_c57.idr	intron (NM_001359953, intron 1 of 5)	B4A|SINE|B4	5456.0	NM_001359953	67630.0	Mm.102765	NM_026283	ENSMUSG00000021770	Samd8	1110053F04Rik|1700010P07Rik|SMSr	sterile alpha motif domain containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81015862-2	chr15	81015762	81015962	+	773.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_153049, exon 11 of 13)	exon (NM_153049, exon 11 of 13)	38097.0	NM_134091	105835.0	Mm.274943	NM_134091	ENSMUSG00000042303	Sgsm3	1810012I01Rik|AI428557|BB175482|Cip85|R75178|RUSC3|Rutbc3	small G protein signaling modulator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129542782-4	chr4	129542696	129542896	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008228)	promoter-TSS (NM_008228)	-150.0	NM_008228	433759.0	Mm.202504	NM_008228	ENSMUSG00000028800	Hdac1	HD1|Hdac1-ps|MommeD5|RPD3	histone deacetylase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118872059-2	chr9	118871943	118872143	+	665.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 11 of 13)	intron (NM_001113514, intron 11 of 13)	-54493.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	-0.882737915087978	-0.870228400904546	-0.55126555509038	-0.348284664960173	-0.882184352590133	-0.867526913455748	-0.876117308256711	-0.878618780156801	-2.9898294800592	0.321895641750235	1
Merged-chr2-52960918-4	chr2	52960826	52961026	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	103058.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-151742437-3	chr3	151742352	151742552	+	773.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133871, intron 5 of 7)	RMER20B|LTR|ERVK	7507.0	NM_133871	99899.0	Mm.30756	NM_133871	ENSMUSG00000028037	Ifi44	A430056A10Rik|AW261460|MTAP44|p44	interferon-induced protein 44	protein-coding	1.07126285074531	2.05880157376903	2.14411220379006	0.693293223627882	0.667538138623469	1.97602241590414	0.715672892228114	0.696389913747813	-1.38246528390644	0.352079572042025	0.852350828361626
Merged-chr16-38521628-2	chr16	38521528	38521728	+	947.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_024273, intron 1 of 6)	PB1D7|SINE|Alu	1035.0	NM_024273	76916.0	Mm.132231	NM_024273	ENSMUSG00000002846	Timmdc1	2810021C21Rik|4930455C21Rik|AV135763	translocase of inner mitochondrial membrane domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-6574722-4	chr15	6574527	6574727	+	971.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5220.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-33027351-4	chr12	33027345	33027545	+	887.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	65430.0	NM_001024478	68764.0	Mm.60083	NM_001024478	ENSMUSG00000035860	Cdhr3	1110049B09Rik|BB172694|Cdh28	cadherin-related family member 3	protein-coding	-0.455357157017538	-0.180153980360927	0.928636835566073	-0.44567986043292	-0.453900566221281	-0.431099358214868	-0.438361988932131	-0.444676770380424	-4.09680393714968	0.0887982404871778	1
Merged-chr2-163929743-4	chr2	163929633	163929833	+	942.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11050.0	NM_183023	241770.0	Mm.330760	NM_183023	ENSMUSG00000035226	Rims4	6530406L02|Rim4	regulating synaptic membrane exocytosis 4	protein-coding	3.07948217937379	3.25449424394936	2.784405110458	3.24494618391329	3.6423666343856	3.5639902988245	3.44939404628387	3.75673964906286	0.815831007257888	0.137066063129849	0.577469500630244
Merged-chr1-184030006-2	chr1	184029906	184030106	+	871.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3992.0	NM_028516	73363.0	Mm.50115	NM_028516	ENSMUSG00000044854	1700056E22Rik	-	RIKEN cDNA 1700056E22 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-92506429-6	chr5	92506365	92506565	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007644)	promoter-TSS (NM_007644)	-808.0	NM_007644	12492.0	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166019508-2	chr2	166019408	166019608	+	909.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008679, intron 1 of 22)	MT2C_Mm|LTR|ERVL	26871.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19342809-4	chr7	19342717	19342917	+	896.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2254.0	NM_001127324	13870.0	Mm.280913	NM_007948	ENSMUSG00000003549	Ercc1	Ercc-1	excision repair cross-complementing rodent repair deficiency, complementation group 1	protein-coding	0.714846384862383	0.982997326934909	1.13113858432788	0.3262106890267	0.473975146658639	0.341855160910321	0.525350654953331	0.327272722210433	-2.75686395752721	0.13059582615069	1
Merged-chr9-122285550-3	chr9	122285417	122285617	+	892.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271873, intron 1 of 12)	intron (NM_001271873, intron 1 of 12)	8906.0	NM_001271873	102566.0	Mm.87676	NM_133979	ENSMUSG00000037949	Ano10	AI604832|Tmem16k	anoctamin 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3704247-2	chr19	3704147	3704347	+	937.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11B|LTR|ERVK	-4046.0	NM_001358256	72056.0	Mm.23780	NM_028077	ENSMUSG00000035372	1810055G02Rik	AI256204	RIKEN cDNA 1810055G02 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65575992-4	chr9	65575892	65576092	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153119, intron 1 of 5)	intron (NM_153119, intron 1 of 5)	4095.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-57400993-2	chr17	57400893	57401093	+	639.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355722, intron 2 of 22)	L1VL2|LINE|L1	42307.0	NM_010130	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-28464147-4	chr2	28464042	28464242	+	920.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027040, intron 2 of 2)	intron (NM_027040, intron 2 of 2)	2182.0	NM_027040	69327.0	Mm.46470	NM_027040	ENSMUSG00000026831	1700007K13Rik	Rbest47	RIKEN cDNA 1700007K13 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-102291674-2	chr11	102291574	102291774	+	546.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001098837, exon 13 of 13)	exon (NM_001098837, exon 13 of 13)	4955.0	NM_001098836	217218.0	Mm.390381	NM_001098836	ENSMUSG00000059995	Atxn7l3	E030022H21Rik	ataxin 7-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-12557286-3	chr4	12557186	12557386	+	949.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-349551.0	NM_173746	208820.0	Mm.12057	NM_173746	ENSMUSG00000055963	Triqk	C130086A10|Gm11818	triple QxxK/R motif containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-87734774-2	chr11	87734674	87734874	+	588.25	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172448, exon 10 of 10)	3' UTR (NM_172448, exon 10 of 10)	-2777.0	NM_001355753	20922.0	Mm.622	NM_009296	ENSMUSG00000020485	Supt4a	AL022777|Supt4h|Supt4h1|Supt4h1a	suppressor of Ty 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-96964818-2	chr11	96964718	96964918	+	808.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_003293, exon 6 of 6)	non-coding (NR_003293, exon 6 of 6)	12870.0	NM_030220	78912.0	Mm.491183	NM_030220	ENSMUSG00000018678	Sp2	4930480I16Rik|mKIAA0048	Sp2 transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-50061618-4	chr16	50061494	50061694	+	923.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045935, intron 1 of 3)	intron (NR_045935, intron 1 of 3)	11258.0	NR_045935	224180.0	Mm.146439	NM_175010		Gm4827	B130050K08|EG224180	predicted gene 4827	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-93094465-4	chr13	93094382	93094582	+	715.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_046182)	promoter-TSS (NR_046182)	-351.0	NR_046182	408254.0	Mm.474857	NR_046182	ENSMUSG00000114968	A630019I02Rik	-	RIKEN cDNA A630019I02 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191851658-2	chr1	191851558	191851758	+	609.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30185.0	NM_010892	18005.0	Mm.33773	NM_010892	ENSMUSG00000026622	Nek2	AA617254|C77054	NIMA (never in mitosis gene a)-related expressed kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-91455134-2	chr1	91455029	91455229	+	714.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_011066, intron 1 of 22)	intron (NM_011066, intron 1 of 22)	4199.0	NM_011066	18627.0	Mm.482463	NM_011066	ENSMUSG00000055866	Per2	mKIAA0347|mPer2	period circadian clock 2	protein-coding	-0.799791159470697	-0.791470917047709	-0.794213087785154	-0.79631796705444	-0.43946358711874	-0.604080919851611	-0.479204254010329	-0.795950932844158	3.01091174955261	0.277039490654303	1
Merged-chr14-36316881-3	chr14	36316782	36316982	+	697.472229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	221917.0	NM_175008	218921.0	Mm.212464	NM_175008	ENSMUSG00000096405	4930474N05Rik	-	RIKEN cDNA 4930474N05 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-97735858-2	chr3	97735758	97735958	+	642.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039376, intron 24 of 46)	intron (NM_001039376, intron 24 of 46)	32156.0	NM_178080	83679.0	Mm.129840	NM_031401	ENSMUSG00000038170	Pde4dip	4732458A06Rik|9430063L05Rik|C87016|D130016K21Rik|D3Bwg1078e|Usmg4|mKIAA0454	phosphodiesterase 4D interacting protein (myomegalin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-75675846-4	chr10	75675745	75675945	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172549, intron 29 of 36)	intron (NM_172549, intron 29 of 36)	-31837.0	NM_027890	71733.0	Mm.247956	NM_027890	ENSMUSG00000006342	Susd2	1200011D11Rik	sushi domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70207822-2	chr14	70207722	70207922	+	661.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011366)	promoter-TSS (NM_011366)	-151.0	NM_011366	20410.0	Mm.5068	NM_011366	ENSMUSG00000022091	Sorbs3	SCAM-1|SH3P3|Sh3d4|vinexin-g	sorbin and SH3 domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-77279045-4	chr10	77278931	77279131	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19731.0	NM_030262	80294.0	Mm.203556	NM_030262	ENSMUSG00000020260	Pofut2	2310011G23Rik|AI256847|BC003494|C21orf80|FUT13	protein O-fucosyltransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-35794990-1	chr5	35794890	35795090	+	547.0	f1_balb.idr	intron (NM_177678, intron 1 of 19)	intron (NM_177678, intron 1 of 19)	37110.0	NM_001177698	231148.0	Mm.254446	NM_177678	ENSMUSG00000029095	Ablim2	AI606905|C230091L11	actin-binding LIM protein 2	protein-coding	-1.06997269762433	-1.30473905204845	-1.3145270772132	-1.32256725251374	-1.06385251204029	-1.30261794616352	-1.3123112828633	-1.32112806497905	0.0394047164033882	0.991001358494878	1
Merged-chr1-87652396-2	chr1	87652248	87652448	+	697.299988	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110192, intron 2 of 26)	RLTR11A2|LTR|ERVK	32036.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-3115753-4	chr17	3115647	3115847	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134123, intron 1 of 19)	intron (NM_134123, intron 1 of 19)	775.0	NM_134123	106583.0	Mm.124373	NM_134123	ENSMUSG00000046201	Scaf8	A630086M08Rik|A930036P18Rik|AA408306|AI447644|AI448652|AU015035|Rbm16|mKIAA1116	SR-related CTD-associated factor 8	protein-coding	3.96793700541455	4.08170928855534	3.89097649033825	3.02951323186794	2.99708258126673	3.9798147303536	3.63340770360339	3.44122568640767	-0.368590235577244	0.490396188986948	0.934345795476137
Merged-chr17-71298253-2	chr17	71298153	71298353	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357337, intron 2 of 7)	Lx5b|LINE|L1	12758.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71186866-3	chr17	71186768	71186968	+	855.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022882, intron 1 of 19)	PB1D7|SINE|Alu	2890.0	NM_022882	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	-0.433697702284369	-0.774891922301519	-0.777611026386862	-0.779697408596106	-0.425847201463438	-0.773998111983558	-0.777012746634502	-0.62395897287644	0.501296798616922	0.860093823500213	1
Merged-chr11-120057939-3	chr11	120057824	120058024	+	711.799988	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER4B|LTR|ERVK	-10779.0	NM_007377	11302.0	Mm.6826	NM_007377	ENSMUSG00000025375	Aatk	AATYK|aatyk1|mKIAA0641	apoptosis-associated tyrosine kinase	protein-coding	2.66878259106296	2.1841932252498	1.14098746916001	4.14246344308502	1.91708009396274	1.20001741703728	2.11610448944824	2.03753498616402	-2.15011418669062	0.0309696120524956	0.242946269076526
Merged-chr8-35826048-2	chr8	35825948	35826148	+	802.833374	f1_balb.idr|f1_c57bl6.idr	exon (NM_027998, exon 1 of 1)	exon (NM_027998, exon 1 of 1)	511.0	NM_027998	71908.0	Mm.37817	NM_027998	ENSMUSG00000055976	Cldn23	2310014B08Rik	claudin 23	protein-coding	0.362423829309759	0.992372185410052	1.07442172365449	0.584264460033094	0.364745944706957	0.401093356248519	0.389512396686725	1.64912415219032	0.314261945374407	0.858992029236651	0.998431161219273
Merged-chr5-66111323-2	chr5	66111223	66111423	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001127382, intron 2 of 7)	intron (NM_001127382, intron 2 of 7)	-13144.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-65195678-3	chr1	65195596	65195796	+	720.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011086, exon 5 of 42)	exon (NM_011086, exon 5 of 42)	9011.0	NM_011086	18711.0	Mm.38370	NM_011086	ENSMUSG00000025949	Pikfyve	5230400C17Rik|Pip5k|Pip5k3|Pipk5k3|PipkIII|p235	phosphoinositide kinase, FYVE type zinc finger containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-153482148-2	chr1	153482048	153482248	+	801.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_007842, intron 3 of 27)	B2_Mm1t|SINE|B2	5512.0	NM_007842	13211.0	Mm.20000	NM_007842	ENSMUSG00000042699	Dhx9	AI326842|Ddx9|HEL-5|NDHII|RHA|mHEL-5	DEAH (Asp-Glu-Ala-His) box polypeptide 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3879143-2	chr19	3879021	3879221	+	657.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271496, intron 3 of 11)	B2_Mm2|SINE|B2	26109.0	NM_016921	27060.0	Mm.271689	NM_016921	ENSMUSG00000001750	Tcirg1	ATP6N1C|ATP6a3|Atp6i|OC-116|OPTB1|Stv1|TIRC7|Vph1|oc	T cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 protein A3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-152432567-2	chr4	152432467	152432667	+	716.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252655, intron 2 of 14)	intron (NM_001252655, intron 2 of 14)	16288.0	NM_001252655	16498.0	Mm.388924	NM_010598	ENSMUSG00000028931	Kcnab2	F5|I2rf5|Kcnb3|kv-beta-2	potassium voltage-gated channel, shaker-related subfamily, beta member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-122608504-4	chr14	122608394	122608594	+	932.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153443, intron 6 of 24)	intron (NR_153443, intron 6 of 24)	74166.0	NM_144844	110821.0	Mm.23876	NM_144844	ENSMUSG00000041650	Pcca	C79630	propionyl-Coenzyme A carboxylase, alpha polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-102209985-3	chr11	102209871	102210071	+	751.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077696, intron 3 of 26)	intron (NM_001077696, intron 3 of 26)	20179.0	NR_106179	102465892.0		NR_106179	ENSMUSG00000098863	Mir8101	Gm27705|mmu-mir-8101	microRNA 8101	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-113339908-3	chr11	113339801	113340001	+	957.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027216, intron 6 of 9)	intron (NM_027216, intron 6 of 9)	-130232.0	NR_040276	319871.0	Mm.383743	NR_040276	ENSMUSG00000085421	4732490B19Rik	-	RIKEN cDNA 4732490B19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-21160227-4	chr13	21160033	21160233	+	749.583374	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17078.0	NM_146534	258527.0	Mm.271440	NM_146534	ENSMUSG00000045474	Olfr1368	MOR256-15	olfactory receptor 1368	protein-coding	0.413994547598073	0.910692164793795	0.598472873722907	0.834226146729756	0.785758817898481	0.784295035880557	0.750298738189846	0.423577969959016	-0.064412826695391	0.968672371022005	1
Merged-chr4-95073520-2	chr4	95073420	95073620	+	704.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21298.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-53568398-4	chr17	53568242	53568442	+	950.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151733, intron 1 of 16)	intron (NR_151733, intron 1 of 16)	1371.0	NR_151733	18519.0	Mm.255025	NM_020005	ENSMUSG00000000708	Kat2b	A930006P13Rik|AI461839|AW536563|Pcaf|p/CAF	K(lysine) acetyltransferase 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-139296778-4	chr7	139296676	139296876	+	887.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48294.0	NM_001098636	101631.0	Mm.334300	NM_001033206	ENSMUSG00000060260	Pwwp2b	AI594893|D7Ertd517e|D930023J19Rik|Pwwp2	PWWP domain containing 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-21914360-2	chr19	21914260	21914460	+	570.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	136020.0	NM_031997	83921.0	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	0.493448159224512	0.520072487601838	0.511397232205007	1.06322152822259	0.898941119886009	1.1699285751261	0.702764867833523	1.17135171876057	1.78106724063852	0.283234020574742	1
Merged-chr10-43504525-4	chr10	43504428	43504628	+	982.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359600, intron 3 of 3)	intron (NM_001359600, intron 3 of 3)	11363.0	NM_001359600	331623.0	Mm.490388	NM_199028	ENSMUSG00000038214	Bend3	mKIAA1553	BEN domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-168629024-1	chr2	168628924	168629124	+	757.0	f0_balb.idr	Intergenic	Intergenic	11735.0	NR_105971	102466784.0		NR_105971	ENSMUSG00000105496	Mir7004	mmu-mir-7004	microRNA 7004	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-23826567-4	chr5	23826484	23826684	+	875.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	17561.0	NM_025394	66169.0	Mm.291868	NM_025394	ENSMUSG00000028998	Tomm7	1110020J08Rik|AW047273|Tom7	translocase of outer mitochondrial membrane 7	protein-coding	3.89603799498127	3.22397055488972	3.88695550783558	4.25725569164588	4.53445586237724	4.04880437320183	4.79068158552297	3.93556578796896	0.676975378260349	0.139493744859603	0.583422943583146
Merged-chr5-125465829-4	chr5	125465731	125465931	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-10042.0	NM_030210	78894.0	Mm.431573	NM_030210	ENSMUSG00000029482	Aacs	2210408B16Rik|SUR5	acetoacetyl-CoA synthetase	protein-coding	5.80211114955349	5.23819883975043	5.9159184056456	5.19351738186901	5.5985596865882	5.5203966938807	5.93182442435999	5.08252648422883	-0.0172320397398461	0.95364904427235	0.998431161219273
Merged-chr2-17740457-4	chr2	17740350	17740550	+	820.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9382.0	NM_028757	74103.0	Mm.120298	NM_028757	ENSMUSG00000053702	Nebl	1200007O21Rik|A630080F05Rik|BB140644|D830029A09Rik|Lnebl	nebulette	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-77267228-4	chr5	77267132	77267332	+	998.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011263, intron 1 of 3)	intron (NM_011263, intron 1 of 3)	1738.0	NM_011263	19712.0	Mm.28840	NM_011263	ENSMUSG00000029249	Rest	2610008J04Rik|AA407358|NRSF|REST4	RE1-silencing transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-138966496-4	chr3	138966398	138966598	+	941.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356388, intron 4 of 13)	intron (NM_001356388, intron 4 of 13)	108703.0	NM_145544	229877.0	Mm.28893	NM_145544	ENSMUSG00000028149	Rap1gds1	BC011279|GDS1	RAP1, GTP-GDP dissociation stimulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-136140172-4	chr5	136140086	136140286	+	978.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_028070, exon 3 of 3)	exon (NM_028070, exon 3 of 3)	1405.0	NM_028070	72041.0	Mm.294725	NM_028070	ENSMUSG00000039754	Alkbh4	2010004B12Rik|Abj4	alkB homolog 4, lysine demethylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-3839625-2	chr16	3839525	3839725	+	835.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_008762, exon 1 of 1)	exon (NM_008762, exon 1 of 1)	650.0	NM_008762	18312.0	Mm.377102	NM_008762	ENSMUSG00000059043	Olfr15	MOR256-17|OR3	olfactory receptor 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-103249673-2	chr15	103249573	103249773	+	604.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001302338, intron 2 of 2)	B1_Mus2|SINE|Alu	2003.0	NM_001302338	18022.0	Mm.457989	NM_008685	ENSMUSG00000058794	Nfe2	NF-E2|NF-E2/P45|p45|p45NFE2|p45nf-e2	nuclear factor, erythroid derived 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-106865516-4	chr4	106865367	106865567	+	925.908325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46003.0	NM_198438	72475.0	Mm.195635	NM_023672	ENSMUSG00000061887	Ssbp3	2610021L12Rik|2610200M23Rik|5730488C10Rik|AI854733|AW551939|LAST|SSDP1	single-stranded DNA binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35125288-4	chr17	35125196	35125396	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001128597)	TTS (NM_001128597)	-1106.0	NM_033477	114585.0	Mm.42070	NM_033477	ENSMUSG00000043311	D17H6S53E	G4|NG34	DNA segment, Chr 17, human D6S53E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-66257826-4	chr14	66257725	66257925	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	23227.0	NM_001162366	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-89001827-4	chr11	89001713	89001913	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009546, intron 1 of 8)	intron (NM_009546, intron 1 of 8)	2410.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	4.66485562023384	5.68613541687392	5.6309807766287	4.59175805113484	5.93034104388194	6.105852864338	5.66762276659969	5.41590963979235	0.655784336821752	0.0431137627502129	0.297743049967606
Merged-chr4-12008828-2	chr4	12008728	12008928	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42254.0	NR_040577	100503636.0	Mm.209078	NR_040577		1700123M08Rik	1600025K15Rik	RIKEN cDNA 1700123M08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-128235339-2	chr8	128235239	128235439	+	773.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42886.0	NR_105822	102465212.0		NR_105822	ENSMUSG00000099326	Mir21c	Gm28013|mmu-mir-21c	microRNA 21c	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-82122579-2	chr15	82122479	82122679	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028897, intron 26 of 30)	Lx5b|LINE|L1	-5343.0	NM_172428	76457.0	Mm.440373	NM_172428	ENSMUSG00000068114	Ccdc134	2310042L06Rik|AW208859	coiled-coil domain containing 134	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-144283505-3	chr1	144283398	144283598	+	801.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34394.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-115989128-3	chr6	115988978	115989178	+	939.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026376, intron 1 of 35)	intron (NM_026376, intron 1 of 35)	5927.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167988417-4	chr2	167988323	167988523	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080708, intron 13 of 21)	intron (NM_001080708, intron 13 of 21)	22170.0	NM_001080708	69553.0	Mm.68454	NM_001080708	ENSMUSG00000074577	Ripor3	2310033K02Rik|Fam65c|Gm124	RIPOR family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-79878339-2	chr10	79878239	79878439	+	605.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 3 of 4)	ID4|SINE|ID	-1328.0	NM_011178	19152.0	Mm.2364	NM_011178	ENSMUSG00000057729	Prtn3	PR3|mPR3	proteinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72940659-3	chr6	72940558	72940758	+	860.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17574.0	NM_001039392	19240.0	Mm.3532	NM_025284	ENSMUSG00000079523	Tmsb10	Ptmb10|Tb10	thymosin, beta 10	protein-coding	2.39260800012485	1.33840424193348	3.00728549120046	2.52760188129128	2.3185897431088	2.9044228205869	1.30968259391432	1.92263103867668	-0.424848508730293	0.668424599935507	0.99330435992635
Merged-chr12-40568257-2	chr12	40568157	40568357	+	713.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	122204.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-95955450-3	chr16	95955340	95955540	+	935.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	-26363.0	NR_040484	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-43948033-2	chr16	43947924	43948124	+	653.5	f0_balb.idr|f1_balb.idr	intron (NM_027801, intron 12 of 15)	MER103C|DNA|hAT-Charlie	31026.0	NM_001007460	332175.0	Mm.327852	NM_001007460	ENSMUSG00000036304	Zdhhc23	Gm1751|Gm779|nidd	zinc finger, DHHC domain containing 23	protein-coding	-0.785473005280599	-0.775848025473521	-0.779007356511879	-0.781440936730357	-0.215373533184753	-0.41304751175655	-0.77831103089013	-0.781016048609667	3.17329530585967	0.279067693441628	1
Merged-chr2-60843250-4	chr2	60843163	60843363	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	38175.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70617279-2	chr14	70617195	70617395	+	649.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001252663, exon 4 of 14)	exon (NM_001252663, exon 4 of 14)	1274.0	NM_001252666	13829.0	Mm.210863	NM_013514	ENSMUSG00000022099	Dmtn	AI325486|Epb4.9|Epb49|dematin	dematin actin binding protein	protein-coding	-0.855579703235962	-0.975257569456906	-0.986249878866078	-0.698154321658238	-0.990799528144428	-0.972814355978826	-0.667563288790783	-0.98781104187203	-0.318298030475226	0.915251971669023	1
Merged-chr14-77850068-4	chr14	77849986	77850186	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025384, intron 3 of 5)	intron (NM_025384, intron 3 of 5)	24831.0	NM_025384	66148.0	Mm.248046	NM_025384	ENSMUSG00000022013	Dnajc15	1110003P16Rik|Dnajd1	DnaJ heat shock protein family (Hsp40) member C15	protein-coding	4.96609572843158	4.10735167369431	4.99108428234218	4.7474508647211	5.48348950873778	4.78141353063453	5.64869362136084	4.44577025705655	0.511775414077376	0.175720379469186	0.645775639984829
Merged-chr10-98912583-2	chr10	98912460	98912660	+	561.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2082.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-46056299-2	chr11	46056199	46056399	+	554.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_009616, intron 1 of 22)	CpG	315.0	NM_001291891	11492.0	Mm.89940	NM_009616	ENSMUSG00000011256	Adam19	AL024287|MADDAM|MTLNB|Mltnb	a disintegrin and metallopeptidase domain 19 (meltrin beta)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-112986176-2	chr2	112986076	112986276	+	830.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001319156, intron 3 of 103)	RMER17B|LTR|ERVK	230907.0	NM_001319156	20192.0	Mm.436657	NM_177652	ENSMUSG00000057378	Ryr3	AI851294|C230090H21|RYR-3	ryanodine receptor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-8779065-2	chr10	8778965	8779165	+	929.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 8 of 19)	B3A|SINE|B2	107005.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166289433-4	chr2	166289331	166289531	+	840.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033467, intron 2 of 2)	intron (NR_033467, intron 2 of 2)	15523.0	NR_033467	670775.0	Mm.384326	NR_033467	ENSMUSG00000084840	Gm11468	-	predicted gene 11468	ncRNA	4.42413125243062	3.96488115844979	3.73906008622553	4.2584511376064	5.19344399978456	4.85744244801595	4.87960245324208	5.05791993374156	1.09656049803894	0.00289158163272505	0.0443269119626514
Merged-chr11-94473892-2	chr11	94473792	94473992	+	951.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001112813, exon 1 of 35)	5' UTR (NM_001112813, exon 1 of 35)	306.0	NM_001177888	12291.0	Mm.29585	NM_009783	ENSMUSG00000020866	Cacna1g	Cav3.1d|[a]1G|a1G|alpha-1G|mKIAA1123	calcium channel, voltage-dependent, T type, alpha 1G subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-26747012-2	chr19	26746912	26747112	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011416, intron 27 of 32)	intron (NM_011416, intron 27 of 32)	-1153.0	NM_001347439	67155.0	Mm.491146	NM_011416	ENSMUSG00000024921	Smarca2	2610209L14Rik|SNF2alpha|Snf2l2|brahma|brm	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125645020-2	chr6	125644920	125645120	+	886.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011708, intron 28 of 51)	L1MA5A|LINE|L1	-45399.0	NM_153589	243634.0	Mm.333398	NM_153589	ENSMUSG00000038115	Ano2	BC033409|Tmem16b	anoctamin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-63240435-3	chr13	63240353	63240553	+	896.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289926, intron 13 of 15)	intron (NM_001289926, intron 13 of 15)	424.0	NR_110521	72061.0	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	2.26946450822347	1.23352929870947	0.963799239808886	1.63796573364453	1.29249290542866	1.89958555938052	0.968322681902577	1.97152601072745	-0.109418356489729	0.930280474598394	0.998431161219273
Merged-chr17-27655508-1	chr17	27655408	27655608	+	543.0	f1_balb.idr	promoter-TSS (NM_001286744)	promoter-TSS (NM_001286744)	-83.0	NM_011861	23969.0	Mm.4926	NM_011861	ENSMUSG00000040276	Pacsin1	A830061D09Rik|H74|mKIAA1379|syndapin	protein kinase C and casein kinase substrate in neurons 1	protein-coding	1.3021146734411	0.448381117816731	1.07972505187359	0.430420082689364	0.590141708711393	0.450636699394319	0.44053099024473	1.335668444174	-0.472681138634961	0.790020246628053	1
Merged-chr2-32553934-2	chr2	32553834	32554034	+	764.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153560, intron 1 of 10)	intron (NM_153560, intron 1 of 10)	-16924.0	NM_010073	13481.0	Mm.22001	NM_010073	ENSMUSG00000026810	Dpm2	AW557993|R75484	dolichol-phosphate (beta-D) mannosyltransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-86277559-4	chr15	86277445	86277645	+	961.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358062)	promoter-TSS (NM_001358062)	-130.0	NM_001358062	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-129823490-4	chr3	129823399	129823599	+	762.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009102)	promoter-TSS (NM_009102)	-994.0	NM_009102	20132.0	Mm.278758	NM_009102	ENSMUSG00000028012	Rrh	-	retinal pigment epithelium derived rhodopsin homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-88627966-2	chr10	88627866	88628066	+	547.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR49|LTR|ERVK	-22814.0	NM_175418	109272.0	Mm.147208	NM_175418	ENSMUSG00000020061	Mybpc1	8030451F13Rik	myosin binding protein C, slow-type	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-103821719-2	chr5	103821619	103821819	+	719.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133919, intron 7 of 19)	intron (NM_133919, intron 7 of 19)	67146.0	NM_001080798	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-42750910-1	chr19	42750810	42751010	+	658.0	f1_balb.idr	intron (NM_029011, intron 1 of 15)	intron (NM_029011, intron 1 of 15)	1865.0	NM_029011	74580.0	Mm.329858	NM_029011	ENSMUSG00000060224	Pyroxd2	3830409H07Rik|4833409A17Rik	pyridine nucleotide-disulphide oxidoreductase domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-89979205-2	chr7	89979105	89979305	+	573.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021876, intron 1 of 11)	intron (NM_021876, intron 1 of 11)	1771.0	NM_021876	13626.0	Mm.380914	NM_021876	ENSMUSG00000030619	Eed	l(7)5Rn|l7Rn5|lusk	embryonic ectoderm development	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-111062645-4	chr8	111062543	111062743	+	959.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6304.0	NM_028274	72544.0	Mm.24174	NM_028274	ENSMUSG00000109941	Exosc6	2610510N21Rik|C76919|Mtr3	exosome component 6	protein-coding	5.56497645159863	4.36405433754004	5.10060900934399	5.59408105031999	4.74061396101765	4.70857084401674	4.8992155767988	5.98990578593568	-0.0494404812173199	0.898780333594695	0.998431161219273
Merged-chr2-42007147-2	chr2	42007047	42007247	+	695.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_053011, intron 2 of 90)	Lx9|LINE|L1	440421.0	NR_105754	102465171.0		NR_105754	ENSMUSG00000098660	Mir6336	Gm27584|mmu-mir-6336	microRNA 6336	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-116647879-2	chr6	116647779	116647979	+	692.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178045, intron 3 of 10)	intron (NM_178045, intron 3 of 10)	-1832.0	NR_106010	102466793.0		NR_106010	ENSMUSG00000098334	Mir7043	Gm27776|mmu-mir-7043	microRNA 7043	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-99238904-4	chr13	99238804	99239004	+	824.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004149, intron 3 of 4)	intron (NM_001004149, intron 3 of 4)	54081.0	NM_001004149	238803.0	Mm.343207	NM_001004149	ENSMUSG00000050919	Zfp366	DC-SCRIPT|Znf366	zinc finger protein 366	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-105778253-2	chr1	105778153	105778353	+	667.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger5|DNA|TcMar-Tigger	-2470.0	NM_009399	21934.0	Mm.6251	NM_009399	ENSMUSG00000026321	Tnfrsf11a	Ly109|ODFR|OFE|Rank|TRANCE-R|mRANK	tumor necrosis factor receptor superfamily, member 11a, NFKB activator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-25136546-2	chr19	25136446	25136646	+	550.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028785, intron 22 of 47)	intron (NM_028785, intron 22 of 47)	-100429.0	NM_181404	107351.0	Mm.260722	NM_181404	ENSMUSG00000032702	Kank1	A930031B09Rik|AU015049|AW121052|Ankrd15|D330024H06Rik|mKIAA0172	KN motif and ankyrin repeat domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100320493-4	chr11	100320387	100320587	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011508, intron 1 of 3)	CpG	538.0	NM_011508	20918.0	Mm.13886	NM_011508	ENSMUSG00000035530	Eif1	Sui1-rs1	eukaryotic translation initiation factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-23564256-4	chr17	23564138	23564338	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033496)	promoter-TSS (NM_001033496)	-12.0	NM_001033496	449521.0	Mm.268582	NM_001033496	ENSMUSG00000071256	Zfp213	BC038178|D17Ertd197e	zinc finger protein 213	protein-coding	7.26779807810033	7.15859868207096	6.59579786008866	7.28720428776166	7.16030952372578	7.14039764313444	7.49418605006553	7.11669255141862	0.135502567248287	0.463859386575719	0.922064436622467
Merged-chr10-25449558-4	chr10	25449481	25449681	+	994.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358754, intron 3 of 16)	intron (NM_001358754, intron 3 of 16)	41213.0	NM_013511	13822.0	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-4572054-4	chr12	4571937	4572137	+	911.6416630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20971.0	NM_001198969	20403.0	Mm.341204	NM_011365	ENSMUSG00000020640	Itsn2	AI327390|Ese2|Sh3d1B|Sh3p18|mKIAA1256	intersectin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-105767940-4	chr7	105767870	105768070	+	999.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162943, intron 2 of 20)	intron (NM_001162943, intron 2 of 20)	-15735.0	NM_009906	12751.0	Mm.20837	NM_009906	ENSMUSG00000030894	Tpp1	Cln2|LPIC|TPP-1|TPP-I	tripeptidyl peptidase I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-25100431-4	chr8	25100360	25100560	+	742.075012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031257, intron 1 of 11)	intron (NM_031257, intron 1 of 11)	1351.0	NM_031257	83436.0	Mm.261122	NM_031257	ENSMUSG00000031557	Plekha2	6430512N22Rik|AI851530|AU041791|TAPP2|W91773	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-66600871-2	chr9	66600771	66600971	+	665.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7756.0	NM_001302116	235441.0	Mm.32465	NM_144937	ENSMUSG00000032376	Usp3	AA409661|BC017156	ubiquitin specific peptidase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-24707858-3	chr6	24707765	24707965	+	932.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25380.0	NM_028920	74409.0	Mm.87331	NM_028920	ENSMUSG00000029679	Hyal6	4932701A20Rik|Hyal-ps1|Hyalp1	hyaluronoglucosaminidase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-121510130-4	chr10	121510108	121510308	+	998.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33958.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-115310572-4	chr9	115310502	115310702	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024222)	promoter-TSS (NM_024222)	-181.0	NM_024222	68292.0	Mm.296158	NM_024222	ENSMUSG00000032437	Stt3b	1300006C19Rik|Simp	STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae)	protein-coding	5.75139645434527	6.0129345193053	5.59863247212158	5.92218016464386	5.92941549665525	6.40894960777293	5.90769966028165	5.61772018738872	0.178409842761152	0.479144692571512	0.928092227925527
Merged-chr14-30590833-2	chr14	30590796	30590996	+	687.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18747.0	NR_037237	100526475.0		NR_037237	ENSMUSG00000093156	Mir3076	mir-3076|mmu-mir-3076	microRNA 3076	ncRNA	-0.705102255032725	-0.952111685752871	-0.962615221777784	-0.437351596801677	-0.967644059894427	-0.94954428968602	-0.961277147858996	-0.964338302966076	-2.86336605559115	0.354266356515036	1
Merged-chr11-3154379-5	chr11	3154284	3154484	+	961.840027	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030207, intron 13 of 32)	intron (NM_030207, intron 13 of 32)	30363.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-115598486-2	chr8	115598386	115598586	+	832.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	108408.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-63906533-3	chr7	63906380	63906580	+	834.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021366, intron 1 of 1)	MTEb|LTR|ERVL-MaLR	-10377.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-59818527-4	chr13	59818441	59818641	+	654.025024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153538, intron 2 of 27)	intron (NM_153538, intron 2 of 27)	4606.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-70803734-4	chr16	70803628	70803828	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	187303.0	NR_040474	52645.0	Mm.188475	NR_040474		D16Ertd519e	-	DNA segment, Chr 16, ERATO Doi 519, expressed	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-33794981-1	chr8	33794881	33795081	+	622.0	f1_balb.idr	intron (NM_019733, intron 7 of 8)	intron (NM_019733, intron 7 of 8)	-47211.0	NM_001206849	72632.0	Mm.443483	NM_001206849	ENSMUSG00000094500	Smim18	2700090O03Rik|AI835723	small integral membrane protein 18	protein-coding	0.5457742188819	1.3995184808429	0.570126802207829	0.561069684630144	1.2122779267873	1.41350944915566	0.572695497870574	1.18571990778716	1.30160992045935	0.435964216877767	0.907834077091723
Merged-chr3-38130297-1	chr3	38130197	38130397	+	700.5	f0_balb.idr	Intergenic	Intergenic	77822.0	NR_040541	71342.0	Mm.410782	NR_040541	ENSMUSG00000106002	5430434I15Rik	-	RIKEN cDNA 5430434I15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-87930726-2	chr10	87930626	87930826	+	632.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001314010, exon 5 of 5)	exon (NM_001314010, exon 5 of 5)	-35945.0	NR_000040	22172.0	Mm.391420	NR_000040		Tyms-ps	-	thymidylate synthase, pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-102225567-4	chr15	102225441	102225641	+	889.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013566, intron 2 of 14)	intron (NM_013566, intron 2 of 14)	6394.0	NM_013566	16421.0	Mm.58	NM_013566	ENSMUSG00000001281	Itgb7	Ly69	integrin beta 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-35679217-4	chr8	35679106	35679306	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001081279, exon 3 of 3)	3' UTR (NM_001081279, exon 3 of 3)	-90186.0	NR_040376	100504714.0	Mm.381744	NR_040376	ENSMUSG00000097357	Gm16793	-	predicted gene, 16793	ncRNA	5.38326280711348	5.45545927365083	5.65881944096551	5.06822258588412	5.58957552389266	5.03604916561131	5.53990903889297	4.74196127933616	-0.14856218113523	0.630076851679317	0.981387068864916
Merged-chr11-75170457-4	chr11	75170412	75170612	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010430)	promoter-TSS (NM_010430)	-257.0	NM_010430	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-99196474-2	chr9	99196374	99196574	+	714.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC1|LINE|L1	40765.0	NM_001244762	623459.0	Mm.260891	NM_001244762	ENSMUSG00000096316	Faiml	EG623459|Gm6432	Fas apoptotic inhibitory molecule like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-153913005-4	chr3	153912892	153913092	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163478)	promoter-TSS (NM_001163478)	-26.0	NR_028094	19352.0	Mm.277831	NM_011231	ENSMUSG00000038975	Rabggtb	-	Rab geranylgeranyl transferase, b subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-40910961-4	chr8	40910868	40911068	+	962.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007514, intron 7 of 11)	intron (NM_007514, intron 7 of 11)	-15265.0	NM_026840	68797.0	Mm.284246	NM_026840	ENSMUSG00000031595	Pdgfrl	1110039P19Rik|AV013190	platelet-derived growth factor receptor-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-76265151-4	chr12	76265046	76265246	+	826.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138745, intron 1 of 27)	RLTR11B|LTR|ERVK	9914.0	NM_138745	108156.0	Mm.29584	NM_138745	ENSMUSG00000021048	Mthfd1	Dcs|E430024A07Rik|Mthfd	methylenetetrahydrofolate dehydrogenase (NADP+ dependent), methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-128312504-4	chr7	128312396	128312596	+	985.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14365.0	NM_145590	233913.0	Mm.220880	NM_145590	ENSMUSG00000030780	BC017158	-	cDNA sequence BC017158	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-41595194-1	chr15	41595094	41595294	+	618.0	f0_balb.idr	intron (NR_152565, intron 2 of 17)	intron (NR_152565, intron 2 of 17)	146091.0	NM_001358977	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-122853798-4	chr6	122853752	122853952	+	798.4381099999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009779, intron 1 of 1)	intron (NM_009779, intron 1 of 1)	2305.0	NM_009779	12267.0	Mm.2408	NM_009779	ENSMUSG00000040552	C3ar1	AZ3B|C3AR|HNFAG09	complement component 3a receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-15257003-4	chr4	15256899	15257099	+	903.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8821.0	NM_181401	100201.0	Mm.394111	NM_181401	ENSMUSG00000043252	Tmem64	9630015D15Rik|AI790744|AV300874	transmembrane protein 64	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-119935678-2	chr8	119935578	119935778	+	683.6999509999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_009462, intron 2 of 13)	intron (NM_009462, intron 2 of 13)	25318.0	NM_001310630	22224.0	Mm.256910	NM_009462	ENSMUSG00000031826	Usp10	2610014N07Rik|UBPO|Uchrp|mKIAA0190	ubiquitin specific peptidase 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-87378523-3	chr17	87378431	87378631	+	847.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028639, intron 19 of 19)	intron (NM_028639, intron 19 of 19)	49210.0	NM_029298	75467.0	Mm.50108	NM_029298	ENSMUSG00000036557	Stpg4	1700011E24Rik|GSE	sperm tail PG rich repeat containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-81785052-2	chr13	81784952	81785152	+	582.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007684, intron 2 of 4)	intron (NM_007684, intron 2 of 4)	1805.0	NM_007684	12626.0	Mm.12481	NM_007684	ENSMUSG00000021537	Cetn3	MmCEN3	centrin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-93805073-2	chr1	93804973	93805173	+	675.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025454, intron 1 of 7)	intron (NM_025454, intron 1 of 7)	1108.0	NM_025454	66262.0	Mm.64065	NM_025454	ENSMUSG00000026283	Ing5	1700001C14Rik|1700027H23Rik|1810018M11Rik|AI225768	inhibitor of growth family, member 5	protein-coding	0.18083828667575	0.405454815957508	0.0511269185063342	0.571718030013295	0.040990194722562	0.0578039060165127	0.0523283327127988	0.674514595027303	-0.510604244589893	0.806976519336651	1
Merged-chr1-180774820-2	chr1	180774720	180774920	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	38785.0	NM_008210	15078.0	Mm.138832	NM_008210	ENSMUSG00000060743	H3f3a	EyeLinc14|H3.3A	H3 histone, family 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-33303617-4	chr14	33303506	33303706	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153800, intron 4 of 10)	intron (NM_153800, intron 4 of 10)	86783.0	NM_153800	239027.0	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128902619-3	chr10	128902531	128902731	+	929.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6288.0	NM_001042580	12512.0	Mm.371552	NM_007653	ENSMUSG00000025351	Cd63	C75951|ME491|Tspan30	CD63 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80985759-4	chr10	80985648	80985848	+	926.94165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038655, intron 2 of 3)	CpG	15617.0	NM_001038655	14708.0	Mm.222496	NM_010319	ENSMUSG00000048240	Gng7	AI840417	guanine nucleotide binding protein (G protein), gamma 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-94602407-2	chr3	94602307	94602507	+	839.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19691.0	NM_029721	76742.0	Mm.28160	NM_029721	ENSMUSG00000028136	Snx27	5730552M22Rik|ESTM45|ESTM47|R75405	sorting nexin family member 27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-106131424-2	chr8	106131324	106131524	+	658.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_010901)	TTS (NM_010901)	-3976.0	NR_040345	69771.0	Mm.393274	NR_040344		1810019D21Rik	-	RIKEN cDNA 1810019D21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-170174768-3	chr2	170174633	170174833	+	620.077759	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32058.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-58939576-3	chr11	58939475	58939675	+	844.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022423)	promoter-TSS (NM_022423)	-669.0	NM_022423	108660.0	Mm.249986	NM_022423	ENSMUSG00000020496	Rnf187	2410016F01Rik|AB030190|RACO-1	ring finger protein 187	protein-coding	1.69404328267693	1.79224112288977	0.98979648833561	1.79415245962976	1.3227239864293	1.01599939920812	2.4829722598639	1.54586395208344	0.374125066535148	0.756143887042166	0.998431161219273
Merged-chr19-3709316-3	chr19	3709231	3709431	+	683.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358257, intron 1 of 3)	intron (NM_001358257, intron 1 of 3)	920.0	NM_001358257	72056.0	Mm.23780	NM_028077	ENSMUSG00000035372	1810055G02Rik	AI256204	RIKEN cDNA 1810055G02 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-165666466-2	chr1	165666366	165666566	+	654.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038846, intron 1 of 5)	intron (NM_001038846, intron 1 of 5)	-31925.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-112593156-2	chr14	112593056	112593256	+	919.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	918041.0	NM_198865	75409.0	Mm.235097	NM_029273	ENSMUSG00000033214	Slitrk5	2610019D03Rik	SLIT and NTRK-like family, member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140265362-2	chr5	140265262	140265462	+	737.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_152617, intron 9 of 16)	intron (NR_152617, intron 9 of 16)	56190.0	NM_001359025	17120.0	Mm.27250	NM_010752	ENSMUSG00000029554	Mad1l1	AI173502|AW550425|Mad1	MAD1 mitotic arrest deficient 1-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-181238325-2	chr2	181238225	181238425	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_183162, exon 5 of 19)	exon (NM_183162, exon 5 of 19)	3702.0	NM_183162	229003.0	Mm.315872	NM_183162	ENSMUSG00000027580	Helz2	PDIP1|Pric285|mKIAA1769|mPDIP1	helicase with zinc finger 2, transcriptional coactivator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-46436952-4	chr11	46436849	46437049	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025426)	promoter-TSS (NM_025426)	2.0	NM_001104530	66213.0	Mm.24159	NM_025426	ENSMUSG00000020397	Med7	1110063B05Rik|Crsp33|Crsp9	mediator complex subunit 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-97068909-3	chr9	97068799	97068999	+	756.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42142.0	NM_138756	192287.0	Mm.228067	NM_138756	ENSMUSG00000032449	Slc25a36	C330005L02Rik	solute carrier family 25, member 36	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-129984953-3	chr3	129984833	129985033	+	923.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207209, intron 22 of 23)	intron (NM_207209, intron 22 of 23)	-14727.0	NM_001293644	66815.0	Mm.31056	NM_025779	ENSMUSG00000027994	Mcub	9030408N13Rik|Ccdc109b	mitochondrial calcium uniporter dominant negative beta subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-83170946-2	chr15	83170846	83171046	+	993.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029787, intron 1 of 8)	intron (NM_029787, intron 1 of 8)	1262.0	NM_029787	109754.0	Mm.22560	NM_029787	ENSMUSG00000018042	Cyb5r3	0610016L08Rik|2500002N19Rik|C85115|Dia-1|Dia1|WU:AL591952.1-001|WU:AL591952.1-002|WU:AL591952.1-003|WU:Cyb5r3	cytochrome b5 reductase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-92611012-4	chr13	92610915	92611115	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172588)	promoter-TSS (NM_172588)	-123.0	NM_172588	218442.0	Mm.297970	NM_172588	ENSMUSG00000021703	Serinc5	A130038L21Rik|AIGP3|C86123|TPO1	serine incorporator 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-35955522-1	chr13	35955422	35955622	+	603.5	f1_balb.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-12384.0	NM_029628	76487.0	Mm.44745	NM_029628	ENSMUSG00000050423	Ppp1r3g	1600032L17Rik	protein phosphatase 1, regulatory (inhibitor) subunit 3G	protein-coding	0.811495669783134	0.893131341701845	1.81824896882039	0.847207312427618	2.56014529790916	2.15162572990415	0.87337508932571	1.99125356205668	2.50963213958416	0.0647755838576307	0.380844881635341
Merged-chr13-58456555-1	chr13	58456455	58456655	+	597.0	f0_balb.idr	Intergenic	L1MA4|LINE|L1	-53212.0	NM_001301341	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31018511-2	chr14	31018411	31018611	+	847.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081251)	promoter-TSS (NM_001081251)	620.0	NM_153547	30877.0	Mm.88512	NM_153547	ENSMUSG00000042354	Gnl3	Ns	guanine nucleotide binding protein-like 3 (nucleolar)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141606776-2	chr4	141606652	141606852	+	737.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133754)	promoter-TSS (NM_133754)	-700.0	NM_133754	74202.0	Mm.490327	NM_133754	ENSMUSG00000006219	Fblim1	2410043F08Rik|Cal|Fblp1|Gt10|migfilin|migfilin(s)	filamin binding LIM protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118900218-1	chr9	118900118	118900318	+	697.0	f1_c57bl6.idr	3' UTR (NM_133721, exon 28 of 28)	3' UTR (NM_133721, exon 28 of 28)	-26318.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	-1.5061220274826	-1.47360709383584	-1.48343987814663	-1.49151681994238	-1.50383953926072	-1.47147628845725	-1.0170701920923	-1.49007105122263	2.15652851593596	0.535359572134045	1
Merged-chr3-10009990-2	chr3	10009890	10010090	+	655.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2595.0	NM_001272097	16592.0	Mm.741	NM_010634	ENSMUSG00000027533	Fabp5	E-FABP|Fabpe|Klbp|PA-FABP|mal1	fatty acid binding protein 5, epidermal	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-89718686-4	chr16	89718584	89718784	+	932.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	99668.0	NM_001145887	21844.0	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-98850417-2	chr15	98850317	98850517	+	767.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001033276, exon 35 of 55)	exon (NM_001033276, exon 35 of 55)	-18909.0	NM_016781	19082.0	Mm.6670	NM_016781	ENSMUSG00000067713	Prkag1	AA571379|BB036179|Prkaac	protein kinase, AMP-activated, gamma 1 non-catalytic subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123721043-4	chr5	123720933	123721133	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027494)	promoter-TSS (NM_027494)	11.0	NM_027494	70650.0	Mm.279427	NM_027494	ENSMUSG00000029427	Zcchc8	5730565F05Rik	zinc finger, CCHC domain containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-3714197-3	chr2	3714011	3714211	+	786.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025626, intron 1 of 3)	intron (NM_025626, intron 1 of 3)	653.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141503295-3	chr4	141503179	141503379	+	782.266663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347235, intron 3 of 14)	intron (NM_001347235, intron 3 of 14)	35318.0	NM_001347235	56381.0	Mm.299906	NM_019763	ENSMUSG00000040761	Spen	Mint|mKIAA0929	spen family transcription repressor	protein-coding	2.22972172514389	3.36549180252422	1.58270049665453	2.91047023938189	1.8466703635613	2.96297586690988	1.59497045030494	1.76295841122275	-1.06073766805617	0.250979484428216	0.74894342252605
Merged-chr14-33205613-4	chr14	33205491	33205691	+	893.70343	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11232.0	NM_153800	239027.0	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-61936986-1	chr18	61936886	61937086	+	551.0	f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-16089.0	NM_172628	225608.0	Mm.262320	NM_172628	ENSMUSG00000045629	Sh3tc2	D430044G18Rik	SH3 domain and tetratricopeptide repeats 2	protein-coding	-1.23751068978892	-1.21098046161303	-0.771974790519738	-1.23020267977392	-1.23706178233105	-1.20869350280629	-1.21914477819513	-1.06491627627522	-1.35556127627954	0.6852864609106	1
Merged-chr1-80639184-4	chr1	80639064	80639264	+	879.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175291, intron 2 of 55)	MTEa|LTR|ERVL-MaLR	26188.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-98779200-2	chr15	98779090	98779290	+	644.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1040.0	NM_011718	22410.0	Mm.4709	NM_011718	ENSMUSG00000022996	Wnt10b	Wnt12	wingless-type MMTV integration site family, member 10B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-71104187-3	chr14	71104112	71104312	+	914.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-147061.0	NR_046075	100043132.0	Mm.399336	NR_046075	ENSMUSG00000115139	Gm4251	-	predicted gene 4251	ncRNA	0.436137023313905	0.465799448575545	0.818423526090965	0.448712314129006	1.31590433604303	0.467950042134005	0.969733030731695	1.2467823550509	2.92879052808212	0.104792186118817	1
Merged-chr5-66101139-1	chr5	66101039	66101239	+	1000.0	f1_balb.idr	intron (NM_001127382, intron 2 of 7)	B4A|SINE|B4	-2960.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	0.846207137930611	0.709905852043927	1.48841448151355	0.887492720816925	1.00618297942658	1.77863994750635	1.50303404642821	0.687061909193527	1.14318695362379	0.422505069411495	0.900322118218157
Merged-chr11-53780024-1	chr11	53779924	53780124	+	1000.0	f0_balb.idr	Intergenic	Intergenic	9551.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-118099791-2	chr4	118099651	118099851	+	853.25	f0_balb.idr|f1_balb.idr	intron (NM_001285520, intron 2 of 11)	ID_B1|SINE|B4	35195.0	NM_001285520	20441.0	Mm.251002	NM_009176	ENSMUSG00000028538	St3gal3	ST3GalIII|ST3N|Siat3|Siat6	ST3 beta-galactoside alpha-2,3-sialyltransferase 3	protein-coding	2.44199684744137	1.51652375648962	3.10834061427777	1.93178109506001	3.75922784563507	3.04159781361308	4.05174922275866	2.3173043621954	1.82190525432965	0.0204368335170164	0.181802601326216
Merged-chr19-7274670-2	chr19	7274570	7274770	+	926.833374	f1_balb.idr|f1_c57bl6.idr	TTS (NM_007928)	TTS (NM_007928)	6391.0	NM_001320554	104383.0	Mm.283859	NM_054048	ENSMUSG00000024968	Rcor2	1A13|AW122124|CoREST|Rcor|Rcor1	REST corepressor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-43293758-3	chr5	43293657	43293857	+	624.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58403.0	NR_028417	665934.0	Mm.381491	NR_028417	ENSMUSG00000085720	Gm7854	EG665934	predicted gene 7854	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165036082-2	chr2	165035893	165036093	+	752.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-1214.0	NM_144892	228869.0	Mm.233080	NM_144892	ENSMUSG00000039804	Ncoa5	CIA	nuclear receptor coactivator 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-60813319-8	chr18	60813081	60813281	+	899.1510619999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001198984)	TTS (NM_001198984)	1105.0	NR_039567	100628611.0		NR_039567	ENSMUSG00000093327	Mir5107	mir-5107|mmu-mir-5107|mu-mir-5107	microRNA 5107	ncRNA	-0.101418947042977	-0.0779134284819551	0.6932361491734	-0.091431086699108	-0.0999211912864214	-0.0762167554943161	-0.0838201688195198	1.0009756475067	0.743589890744141	0.750429136887263	1
Merged-chr17-28771124-2	chr17	28771024	28771224	+	685.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011950, intron 2 of 11)	intron (NM_011950, intron 2 of 11)	1807.0	NM_011950	26415.0	Mm.27970	NM_011950	ENSMUSG00000004864	Mapk13	SAPK4|Serk4	mitogen-activated protein kinase 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-144695297-3	chr2	144695164	144695364	+	949.977783	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025314, intron 4 of 5)	intron (NM_025314, intron 4 of 5)	95311.0	NM_025314	66044.0	Mm.28109	NM_025314	ENSMUSG00000027430	Dtd1	0610006H08Rik|DTD|DUE-B|Hars2	D-tyrosyl-tRNA deacylase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-104856276-1	chr3	104856176	104856376	+	651.0	f0_balb.idr	intron (NM_009797, intron 1 of 9)	ORR1B2|LTR|ERVL-MaLR	8229.0	NM_009797	12340.0	Mm.19142	NM_009797	ENSMUSG00000070372	Capza1	CAPZ|CAZ1|Cappa1|capZ alpha-1	capping protein (actin filament) muscle Z-line, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-57262505-6	chr9	57262394	57262594	+	993.380981	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_028820, exon 1 of 3)	5' UTR (NM_028820, exon 1 of 3)	105.0	NM_028820	74211.0	Mm.428905	NM_028820	ENSMUSG00000032300	1700017B05Rik	AA682102|D9Ertd278e	RIKEN cDNA 1700017B05 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91115392-2	chr2	91115292	91115492	+	571.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_011355, exon 5 of 5)	exon (NM_011355, exon 5 of 5)	-2752.0	NM_008653	17868.0	Mm.10728	NM_008653	ENSMUSG00000002100	Mybpc3	-	myosin binding protein C, cardiac	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-7240143-3	chr9	7240053	7240253	+	858.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32361.0	NM_008607	17386.0	Mm.5022	NM_008607	ENSMUSG00000050578	Mmp13	Clg|MMP-13|Mmp1	matrix metallopeptidase 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27310381-2	chr2	27310281	27310481	+	794.333374	f1_balb.idr|f1_c57bl6.idr	intron (NR_133905, intron 3 of 29)	B4|SINE|B4	-63078.0	NM_138665	192166.0	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-67247641-2	chr7	67247541	67247741	+	649.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357324, intron 8 of 11)	MTC|LTR|ERVL-MaLR	25025.0	NM_001191051	75099.0	Mm.121691	NM_175215	ENSMUSG00000043831	Lysmd4	4930506D23Rik	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-64705410-2	chr1	64705310	64705510	+	783.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001097644, intron 3 of 9)	intron (NM_001097644, intron 3 of 9)	14065.0	NM_001097644	227210.0	Mm.39706	NM_001097644	ENSMUSG00000070871	Ccnyl1	9630037P07Rik|AW554339	cyclin Y-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141019274-2	chr7	141019174	141019374	+	614.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2382.0	NM_001033632	213002.0	Mm.276440	NM_001033632	ENSMUSG00000059108	Ifitm6	A330075D07|Dspa2f|Fgls5|fragilis5	interferon induced transmembrane protein 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3910365-2	chr19	3910265	3910465	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271443, intron 5 of 6)	intron (NM_001271443, intron 5 of 6)	2409.0	NM_144870	225887.0	Mm.44227	NM_144870	ENSMUSG00000059734	Ndufs8	BC021616|CI-23kD|TYKY	NADH dehydrogenase (ubiquinone) Fe-S protein 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34954804-2	chr17	34954704	34954904	+	952.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2333.0	NR_015536	68763.0	Mm.28895	NR_015536	ENSMUSG00000092203	1110038B12Rik	0610009C20Rik|0910001G04Rik	RIKEN cDNA 1110038B12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128705575-2	chr2	128705475	128705675	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 1 of 18)	intron (NM_008587, intron 1 of 18)	6660.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-66363021-2	chr5	66362921	66363121	+	648.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310626, intron 9 of 15)	intron (NM_001310626, intron 9 of 15)	-25356.0	NM_001201416	11787.0	Mm.5159	NM_009686	ENSMUSG00000029207	Apbb2	2310007D03Rik|FE65L1|Rirl1|TR2L|Zfra	amyloid beta (A4) precursor protein-binding, family B, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126778872-4	chr8	126778773	126778973	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-70147.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	5.59025670802633	6.06770728864981	5.86342163403576	6.11299156219951	5.19545319208985	4.60827709863544	3.66040996005009	5.11930059531619	-1.30926605911217	9.23298677329664e-05	0.00292545885491232
Merged-chr5-3494598-4	chr5	3494568	3494768	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 5 of 7)	intron (NM_009873, intron 5 of 7)	-49165.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-24653420-4	chr18	24653316	24653516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026779)	promoter-TSS (NM_026779)	-275.0	NM_026779	68591.0	Mm.28252	NM_026779	ENSMUSG00000039616	Mocos	1110018O12Rik|HMCS|MCS|MOS	molybdenum cofactor sulfurase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-107205335-2	chr11	107205235	107205435	+	652.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-15954.0	NM_001161329	68979.0	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-27742338-4	chr3	27742238	27742438	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31886.0	NM_173182	72007.0	Mm.38832	NM_173182	ENSMUSG00000039286	Fndc3b	1600019O04Rik|AW550168|Fad104|mKIAA4164	fibronectin type III domain containing 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-46839611-3	chr7	46839490	46839690	+	871.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6214.0	NM_010699	16828.0	Mm.29324	NM_010699	ENSMUSG00000063229	Ldha	Ldh1|Ldhm|l7R2	lactate dehydrogenase A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-140853725-4	chr6	140853652	140853852	+	813.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	226867.0	NM_001309436	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-91754036-2	chr6	91753936	91754136	+	821.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009320, intron 14 of 14)	intron (NM_009320, intron 14 of 14)	53357.0	NM_001159507	243547.0	Mm.333264	NM_001033353	ENSMUSG00000030098	Grip2	-	glutamate receptor interacting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-31364183-1	chr15	31364083	31364283	+	690.0	f0_balb.idr	intron (NM_027496, intron 1 of 3)	intron (NM_027496, intron 1 of 3)	3576.0	NM_001357923	67434.0	Mm.102470	NM_026153	ENSMUSG00000022237	Ankrd33b	0610012A05Rik|3021401C12Rik|5730557B15Rik	ankyrin repeat domain 33B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-49825140-2	chr11	49825040	49825240	+	854.400024	f1_balb.idr|f1_c57bl6.idr	intron (NM_013529, intron 13 of 18)	intron (NM_013529, intron 13 of 18)	-21611.0	NM_001163671	26420.0	Mm.68933	NM_016961	ENSMUSG00000020366	Mapk9	AI851083|JNK2|Prkm9|p54aSAPK	mitogen-activated protein kinase 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-160209613-3	chr2	160209508	160209708	+	914.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	117886.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-102921179-2	chr14	102921079	102921279	+	817.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	61453.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-113646341-2	chr5	113646241	113646441	+	762.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008153, intron 1 of 2)	intron (NM_008153, intron 1 of 2)	-2738.0	NM_001359060	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-54778853-1	chr14	54778753	54778953	+	570.5	f1_balb.idr	intron (NM_016972, intron 1 of 10)	intron (NM_016972, intron 1 of 10)	3033.0	NM_016972	50934.0	Mm.276831	NM_016972	ENSMUSG00000022180	Slc7a8	AA408822|LAT2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-103927617-4	chr5	103927501	103927701	+	974.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16342.0	NM_001359986	246293.0	Mm.179871	NM_178741	ENSMUSG00000029312	Klhl8	2310001P09Rik|D5Ertd431e	kelch-like 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-108508029-2	chr6	108507929	108508129	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 54 of 61)	ORR1D1|LTR|ERVL-MaLR	18286.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-44410773-2	chr19	44410673	44410873	+	884.1666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3064.0	NM_009127	20249.0	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-148821739-4	chr1	148821631	148821831	+	870.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	1100708.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70778844-3	chr8	70778700	70778900	+	629.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_199308, exon 26 of 26)	3' UTR (NM_199308, exon 26 of 26)	1938.0	NR_029440	72093.0	Mm.271208	NR_029440		2010320M18Rik	-	RIKEN cDNA 2010320M18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-8353885-4	chr5	8353788	8353988	+	988.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001007220, intron 2 of 28)	L1_Mus2|LINE|L1	14272.0	NM_001007221	11496.0	Mm.275895	NM_001007220	ENSMUSG00000040537	Adam22	2900022I03Rik|AI854032|MDC2	a disintegrin and metallopeptidase domain 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-41305077-2	chr10	41304977	41305177	+	723.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16C|LTR|ERVL	-1836.0	NM_133999	103199.0	Mm.277242	NM_133999	ENSMUSG00000038417	Fig4	A530089I17Rik|AI326867|Sac3	FIG4 phosphoinositide 5-phosphatase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-83130056-3	chr15	83129961	83130161	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347082, intron 6 of 7)	intron (NM_001347082, intron 6 of 7)	-7260.0	NM_029101	74778.0	Mm.30056	NM_029101	ENSMUSG00000018040	Rrp7a	1110014J01Rik|AA408146|Kheg1	ribosomal RNA processing 7 homolog A (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71543820-3	chr8	71543694	71543894	+	798.888916	f1_balb.idr|f1_c57bl6.idr	intron (NM_028617, intron 3 of 8)	intron (NM_028617, intron 3 of 8)	864.0	NM_028617	73711.0	Mm.307770	NM_028617	ENSMUSG00000031813	Mvb12a	1110012M11Rik|Fam125a	multivesicular body subunit 12A	protein-coding	1.01139438114144	1.91910550051877	0.558489237714812	0.759766824089158	0.531662629031282	1.191129921434	1.13816629956181	0.549456758408131	-1.16454093348753	0.452737878144332	0.91869698872066
Merged-chr5-105622121-2	chr5	105622021	105622221	+	777.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-77848.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-86526661-4	chr6	86526567	86526767	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011865)	promoter-TSS (NM_011865)	-478.0	NM_011865	23983.0	Mm.274146	NM_011865	ENSMUSG00000051695	Pcbp1	WBP17|[a]CP-1|alphaCP-1|hnRNP E1|hnRNP-E1	poly(rC) binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-22082512-2	chr15	22082412	22082612	+	595.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	632472.0	NM_001165971	545091.0	Mm.475598	NM_001165971		Hnrnpa1l2-ps2	EG545091|Gm5803	heterogeneous nuclear ribonucleoprotein A1-like 2, pseudogene 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120325603-2	chr8	120325503	120325703	+	891.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-97373.0	NR_110496	434353.0	Mm.411793	NR_110496	ENSMUSG00000097960	A330074K22Rik	-	RIKEN cDNA A330074K22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-87603447-2	chr17	87603348	87603548	+	609.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32531.0	NM_008532	17075.0	Mm.4259	NM_008532	ENSMUSG00000045394	Epcam	CD326|EGP|EGP-2|Egp314|Ep-CAM|EpCAM1|GA733-2|Ly74|TROP1|Tacsd1|Tacstd1|gp40	epithelial cell adhesion molecule	protein-coding	-0.782443457975973	-0.773442932415652	-0.604235877675718	-0.778679543393188	-0.228881207585067	-0.772573376529108	-0.59997911991265	-0.778282359052657	2.12786014258613	0.445534557526206	1
Merged-chr17-81668187-4	chr17	81668084	81668284	+	999.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 1 of 8)	intron (NR_104580, intron 1 of 8)	70203.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-120095702-2	chr6	120095602	120095802	+	975.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_016718, intron 1 of 3)	L1MB5|LINE|L1	2322.0	NM_016718	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-31115093-2	chr7	31115023	31115223	+	793.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110252, intron 1 of 13)	intron (NM_001110252, intron 1 of 13)	203.0	NM_008281	15451.0	Mm.19182	NM_008281	ENSMUSG00000001249	Hpn	Hlb320	hepsin	protein-coding	1.49319285005668	0.786817456654486	1.64982191777916	2.31536979149441	1.70604267481534	0.791104496366283	0.771748707051557	0.754706978589236	-1.90678276130783	0.190813504941513	0.669546561020494
Merged-chr3-145922322-2	chr3	145922222	145922422	+	914.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-1940.0	NM_009740	12042.0	Mm.239141	NM_009740	ENSMUSG00000028191	Bcl10	AI132454|BCL-10|C81403|CARMEN|CIPER|CLAP|ME10|cE10	B cell leukemia/lymphoma 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-30738652-4	chr13	30738548	30738748	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10585.0	NM_001347508	16364.0	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-25843721-3	chr15	25843624	25843824	+	899.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034851, intron 1 of 8)	intron (NM_001034851, intron 1 of 8)	426.0	NM_001034851	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-47014826-4	chr13	47014700	47014900	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175340)	promoter-TSS (NM_175340)	50.0	NM_175340	105193.0	Mm.25593	NM_175340	ENSMUSG00000044231	Nhlrc1	AI505271|B230309E09Rik|EPM2B	NHL repeat containing 1	protein-coding	5.8191279629371	6.21977074440513	5.69990364094016	5.68543495054077	5.99011667575222	5.9497265205298	5.94764881110192	5.51142575592137	-0.0068856590404103	0.977995436841962	0.998431161219273
Merged-chr3-108911202-4	chr3	108911060	108911260	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025845, intron 1 of 5)	CpG	569.0	NM_025845	66921.0	Mm.51049	NM_025845	ENSMUSG00000027881	Prpf38b	1110021E09Rik|AU018955	PRP38 pre-mRNA processing factor 38 (yeast) domain containing B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-12801256-4	chr19	12801157	12801357	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134152, intron 1 of 8)	intron (NM_134152, intron 1 of 8)	2678.0	NM_134152	107321.0	Mm.313136	NM_134152	ENSMUSG00000024696	Lpxn	4933402K05Rik|A530083L21Rik|AV278559|LDPL	leupaxin	protein-coding	3.01952722492256	2.95545664819762	2.97312995564147	3.7345144508102	3.46940664259407	3.5833672060383	3.61459503886703	2.15079492029823	0.169616280657992	0.792363878154235	0.998431161219273
Merged-chr7-121073739-4	chr7	121073656	121073856	+	834.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030691, intron 1 of 5)	intron (NM_030691, intron 1 of 5)	774.0	NM_030691	80719.0	Mm.160384	NM_030691	ENSMUSG00000035004	Igsf6	-	immunoglobulin superfamily, member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-37601273-4	chr6	37601184	37601384	+	946.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	71111.0	NM_145364	208665.0	Mm.262635	NM_145364	ENSMUSG00000038641	Akr1d1	-	aldo-keto reductase family 1, member D1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-32537336-4	chr11	32537251	32537451	+	831.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 1 of 18)	intron (NM_009288, intron 1 of 18)	4085.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	2.36076364427181	2.31759362819426	2.0982700885411	1.50378928441485	2.18482733882466	2.02666761001221	3.28735658386594	1.51099723586579	0.728709215330209	0.4382056383392	0.908612234382228
Merged-chr2-6718349-4	chr2	6718250	6718450	+	857.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110232, intron 4 of 15)	intron (NM_001110232, intron 4 of 15)	3312.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-59427420-4	chr2	59427318	59427518	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40736.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-23876784-2	chr18	23876684	23876884	+	766.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162941, intron 5 of 7)	intron (NM_001162941, intron 5 of 7)	72814.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-91640423-4	chr13	91640327	91640527	+	939.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360776, intron 4 of 15)	intron (NM_001360776, intron 4 of 15)	-101094.0	NM_028790	74156.0	Mm.275963	NM_028790	ENSMUSG00000021620	Acot12	1300004O04Rik|4930449F15Rik|AV027244|Cach|mCACH-1	acyl-CoA thioesterase 12	protein-coding	3.25028286478993	2.55256294624479	2.92074756410857	4.16622983248456	4.12248149463943	3.29367835612481	3.18162233895445	3.65947831335497	0.370706710142512	0.545805832203177	0.956736445492953
Merged-chr13-6922456-1	chr13	6922356	6922556	+	679.0	f0_balb.idr	Intergenic	Intergenic	-273685.0	NM_001291071	56421.0	Mm.273874	NM_019703	ENSMUSG00000021196	Pfkp	1200015H23Rik|9330125N24Rik|ATP-PFK|PFK-C|PFK-P	phosphofructokinase, platelet	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36482214-4	chr18	36482113	36482313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27718.0	NM_026027	67199.0	Mm.30184	NM_026027	ENSMUSG00000024346	Pfdn1	2700086I23Rik|AA408327|AU044714	prefoldin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-43408227-2	chr7	43408127	43408327	+	819.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172900)	promoter-TSS (NM_172900)	-53.0	NM_172900	243958.0	Mm.24444	NM_172900	ENSMUSG00000030468	Siglecg	9830164H23|A630096C01Rik|Siglec-G|Siglec10|mSiglec-G	sialic acid binding Ig-like lectin G	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-158143439-3	chr2	158143275	158143475	+	894.875	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009373, intron 1 of 12)	intron (NM_009373, intron 1 of 12)	3017.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-68443012-3	chr10	68442948	68443148	+	814.200012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028491, intron 5 of 7)	intron (NM_028491, intron 5 of 7)	98827.0	NM_028491	73287.0	Mm.141830	NM_028491	ENSMUSG00000019945	Cabcoco1	1700040L02Rik	ciliary associated calcium binding coiled-coil 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102757881-4	chr12	102757783	102757983	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025666)	promoter-TSS (NM_025666)	-73.0	NM_001142938	100233175.0	Mm.291222	NM_001142938	ENSMUSG00000091931	Gon7	-	GON7, KEOPS complex subunit homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-63601664-4	chr15	63601534	63601734	+	684.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-122026.0	NR_045279	432958.0	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125494375-3	chr6	125494386	125494586	+	840.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007657, intron 1 of 7)	CpG	274.0	NM_007657	12527.0	Mm.210676	NM_007657	ENSMUSG00000030342	Cd9	Tspan29	CD9 antigen	protein-coding	-0.236080099274197	0.494272260582703	-0.226679056487386	0.072076827513705	-0.235207894726578	-0.221059227455084	-0.0457961565061637	-0.0637788650049748	-1.89462706907522	0.407827902427334	1
Merged-chr10-82695105-2	chr10	82695005	82695205	+	592.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-3902.0	NM_001081218	67933.0	Mm.127405	NM_026462	ENSMUSG00000020246	Hcfc2	1700129L13Rik|AU019838|fkls	host cell factor C2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-77342142-4	chr2	77342043	77342243	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61551.0	NM_175465	228071.0	Mm.27120	NM_175465	ENSMUSG00000042272	Sestd1	1500031J16Rik|A930010O20|Solo/Trio8	SEC14 and spectrin domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-25017117-4	chr8	25017030	25017230	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007404)	promoter-TSS (NM_007404)	-81.0	NM_027194	69742.0	Mm.28626	NM_027194	ENSMUSG00000031556	Tm2d2	2410018G23Rik|Blp1	TM2 domain containing 2	protein-coding	6.30787522361856	6.76692991081265	6.7916769915893	6.66271702906912	6.04552486893818	6.78992736995661	6.84271301520526	6.65126801892271	-0.0344103173817592	0.874932981943181	0.998431161219273
Merged-chr1-172324871-4	chr1	172324724	172324924	+	817.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360808, intron 3 of 3)	intron (NM_001360808, intron 3 of 3)	4498.0	NM_008429	16524.0	Mm.261168	NM_008429	ENSMUSG00000038026	Kcnj9	1700085N21Rik|Girk3|Kir3.3|mbGIRK3	potassium inwardly-rectifying channel, subfamily J, member 9	protein-coding	1.64938471791507	1.99118185072282	2.04866359154768	1.73363486429555	2.00549258256816	1.22129238155063	2.61170116064549	1.74220674962235	0.389306652746223	0.703896385382017	0.998431161219273
Merged-chr11-82780735-2	chr11	82780635	82780835	+	669.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291247)	promoter-TSS (NM_001291247)	307.0	NR_126068	100503272.0	Mm.486964	NR_126067	ENSMUSG00000085175	Gm11423	-	predicted gene 11423	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-5713452-4	chr2	5713349	5713549	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290374, intron 1 of 9)	intron (NM_001290374, intron 1 of 9)	1313.0	NM_001290374	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111943431-2	chr12	111943331	111943531	+	573.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_029464, intron 2 of 2)	intron (NR_029464, intron 2 of 2)	1051.0	NR_029464	77675.0	Mm.98331	NR_029464	ENSMUSG00000113769	5033406O09Rik	9130204G15Rik	RIKEN cDNA 5033406O09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34952661-8	chr17	34952531	34952731	+	973.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027943)	promoter-TSS (NR_027943)	-160.0	NR_015536	68763.0	Mm.28895	NR_015536	ENSMUSG00000092203	1110038B12Rik	0610009C20Rik|0910001G04Rik	RIKEN cDNA 1110038B12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-130781779-2	chr4	130781679	130781879	+	708.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001159604)	TTS (NM_001159604)	-10758.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-81324661-4	chr16	81324582	81324782	+	917.716675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113208, intron 1 of 17)	MTE2b|LTR|ERVL-MaLR	123985.0	NM_010954	17968.0	Mm.433941	NM_010954	ENSMUSG00000022762	Ncam2	Ncam-2|Ocam|RNCAM	neural cell adhesion molecule 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-116066249-1	chr2	116066149	116066349	+	566.0	f0_balb.idr	promoter-TSS (NR_153841)	promoter-TSS (NR_153841)	-976.0	NR_153841	654793.0	Mm.448948	NR_153841		G630016G05Rik	-	RIKEN cDNA G630016G05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-68605806-3	chr13	68605722	68605922	+	796.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027035, intron 1 of 2)	MLT1I|LTR|ERVL-MaLR	8383.0	NM_027035	69315.0	Mm.272795	NM_027035	ENSMUSG00000021534	1700001L19Rik	-	RIKEN cDNA 1700001L19 gene	protein-coding	2.75543004773614	2.73050566486043	3.32531473428031	3.23619568751635	2.77802842974119	3.20543347734604	3.00643457242319	2.57894616587311	-0.240709080961969	0.710864541178868	0.998431161219273
Merged-chr4-66063944-2	chr4	66063844	66064044	+	711.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019514, intron 3 of 21)	intron (NM_019514, intron 3 of 21)	340539.0	NM_019514	56079.0	Mm.445312	NM_019514	ENSMUSG00000028373	Astn2	1d8|Astnl|bM452J22.1	astrotactin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-108751536-3	chr6	108751439	108751639	+	661.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31520.0	NM_026011	67166.0	Mm.271178	NM_026011	ENSMUSG00000030105	Arl8b	2610313E07Rik|3100002J04Rik|Arl10c|gie1	ADP-ribosylation factor-like 8B	protein-coding	0.581167220962794	1.08899841052774	0.447987320604728	0.884230391623731	0.832581456520721	0.457940754662456	1.15313963218861	0.442795125004478	-0.0753735306476314	0.964504357835257	1
Merged-chr3-88487380-2	chr3	88487280	88487480	+	652.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001002011, intron 2 of 11)	intron (NM_001002011, intron 2 of 11)	5932.0	NM_019390	16905.0	Mm.243014	NM_019390	ENSMUSG00000028063	Lmna	Dhe	lamin A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28384545-2	chr7	28384445	28384645	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_026042)	TTS (NM_026042)	-5317.0	NM_011756	22695.0	Mm.389856	NM_011756	ENSMUSG00000044786	Zfp36	Gos24|Nup475|TIS11D|TISII|Tis11|Ttp|Zfp-36	zinc finger protein 36	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132039043-4	chr4	132038925	132039125	+	825.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183428, intron 1 of 20)	LTR104_Mam|LTR|Gypsy	10053.0	NM_001128606	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-88409982-4	chr10	88409897	88410097	+	906.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004164, intron 2 of 20)	MLTR25A|LTR|ERVK	30585.0	NM_001004164	432486.0	Mm.335190	NM_001004164	ENSMUSG00000035311	Gnptab	EG432486|mKIAA1208	N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-98228707-1	chr7	98228607	98228807	+	541.0	f1_c57bl6.idr	intron (NM_001360616, intron 6 of 9)	B1_Mus1|SINE|Alu	-29232.0	NM_001081167	272411.0	Mm.98333	NM_001081167	ENSMUSG00000074004	B3gnt6	BC039789|Core-3|Core3	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6 (core 3 synthase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107571633-2	chr9	107571533	107571733	+	742.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_010489, intron 3 of 3)	intron (NM_010489, intron 3 of 3)	2470.0	NM_010489	15587.0	Mm.4834	NM_010489	ENSMUSG00000010047	Hyal2	AI256841|AU020858|AW555733	hyaluronoglucosaminidase 2	protein-coding	0.755100497163939	0.504167129021341	1.07929072579793	1.1364138696157	0.762325099846152	0.506015899848284	1.0909317557745	0.490697847597254	-0.824524524977449	0.618514140684391	1
Merged-chr16-18248096-3	chr16	18247990	18248190	+	871.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080999)	promoter-TSS (NM_001080999)	604.0	NM_011239	19385.0	Mm.235287	NM_011239	ENSMUSG00000005732	Ranbp1	Htf9a	RAN binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-133512825-4	chr2	133512709	133512909	+	993.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39350.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-16341531-2	chr3	16341431	16341631	+	573.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	158366.0	NM_172677	229096.0	Mm.23834	NM_172677	ENSMUSG00000047213	Ythdf3	9130022A11Rik	YTH domain family 3	protein-coding	-1.18832717429738	-1.16380929885254	-0.856565824811958	-1.18328408639367	-1.18787580914644	-1.16149229066421	-0.849604865165746	-1.18171197755832	0.0406512889656815	0.990321405100139	1
Merged-chr11-69036979-2	chr11	69036879	69037079	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001013256)	TTS (NM_001013256)	-8658.0	NM_011496	20877.0	Mm.3488	NM_011496	ENSMUSG00000020897	Aurkb	AIM-1|AIRK2|AL022959|Aik2|Aim1|Ark2|AurB|IPL1|STK-1|Stk12|Stk5	aurora kinase B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105930818-4	chr8	105930717	105930917	+	809.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_173432, exon 3 of 3)	3' UTR (NM_173432, exon 3 of 3)	3045.0	NM_023182	109660.0	Mm.2745	NM_023182	ENSMUSG00000031896	Ctrl	0910001G08Rik|1810004D15Rik|AV005227|Ctra-1|Ctra1|chymopasin|mFLJ00366	chymotrypsin-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5447727-4	chr19	5447758	5447958	+	932.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010235, exon 1 of 4)	5' UTR (NM_010235, exon 1 of 4)	160.0	NM_010235	14283.0	Mm.6215	NM_010235	ENSMUSG00000024912	Fosl1	AW538199|Fra1|fra-1	fos-like antigen 1	protein-coding	3.09272586000977	3.2242803557682	1.49107866192393	1.72452425327432	3.25213125773555	3.93553433128579	3.13808301140165	2.48376050077841	1.17139482237096	0.147466038448609	0.597466522728415
Merged-chr10-13941625-4	chr10	13941524	13941724	+	744.395813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24451.0	NM_001358783	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-31883787-3	chr16	31883687	31883887	+	796.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013900, exon 4 of 16)	exon (NM_013900, exon 4 of 16)	4977.0	NM_013900	30060.0	Mm.30988	NM_013900	ENSMUSG00000022780	Meltf	CD228|MTf|Mfi2	melanotransferrin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-153408575-1	chr1	153408475	153408675	+	557.0	f0_c57.idr	intron (NR_033736, intron 1 of 3)	intron (NR_033736, intron 1 of 3)	5658.0	NR_033736	626058.0	Mm.31556	NM_001177359		E330020D12Rik	EG626058|F430003O07Rik|Gm6648	Riken cDNA E330020D12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-53893862-2	chr19	53893762	53893962	+	661.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011050, intron 1 of 11)	intron (NM_011050, intron 1 of 11)	1631.0	NM_011050	18569.0	Mm.1605	NM_011050	ENSMUSG00000024975	Pdcd4	D19Ucla1|Ma3|Tis	programmed cell death 4	protein-coding	1.32799547382786	0.705653834002591	0.692616929024116	1.51523615564017	1.596327088422	0.708561665047551	0.695512028275407	1.52500641020998	0.351108311894205	0.825311916789438	0.998431161219273
Merged-chr15-51448495-4	chr15	51448320	51448520	+	883.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52810.0	NR_045092	100502643.0	Mm.131987	NR_045092	ENSMUSG00000115654	Gm19303	-	predicted gene, 19303	ncRNA	0.0277214632794664	0.042887681058492	0.037901459268527	0.542191014622663	0.287107740901346	0.522160156738045	0.355606761803381	0.0347354234291137	0.949472612860672	0.652005434527087	1
Merged-chr3-95893869-4	chr3	95893790	95893990	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146134)	promoter-TSS (NM_146134)	-31.0	NM_146104	226548.0	Mm.306954	NM_146104	ENSMUSG00000015750	Aph1a	6530402N02Rik|APH-1a	aph1 homolog A, gamma secretase subunit	protein-coding	6.53085283262548	6.4252336358269	6.51687833341346	7.05926195189247	6.72826415701229	6.81321624699496	6.93408251516611	6.94007879035372	0.208877041306505	0.286313237401398	0.790788725216844
Merged-chr16-92875269-2	chr16	92875169	92875369	+	729.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-49195.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-27508457-4	chr14	27508355	27508555	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177111)	promoter-TSS (NM_177111)	5.0	NM_177111	320234.0	Mm.247767	NM_177111	ENSMUSG00000046753	Ccdc66	E230015L20Rik	coiled-coil domain containing 66	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-150176797-3	chr5	150176696	150176896	+	969.4166869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-83134.0	NM_172887	320365.0	Mm.216590	NM_172887	ENSMUSG00000056602	Fry	13CDNA73|9330186A19Rik|AF346502|AI462658|C87180|D930046M03|cg003|mKIAA4143	FRY microtubule binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-5576806-4	chr15	5576694	5576894	+	955.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045274, intron 2 of 4)	intron (NR_045274, intron 2 of 4)	80476.0	NR_045274	71432.0	Mm.291087	NR_045274	ENSMUSG00000110018	5430437J10Rik	-	RIKEN cDNA 5430437J10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167061756-7	chr2	167061630	167061830	+	817.4523929999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033196, intron 1 of 13)	intron (NM_001033196, intron 1 of 13)	-1204.0	NR_138563	68949.0	Mm.391959	NM_001081005		Zfas1	1500012F01Rik|Zfos1	zinc finger, NFX1-type containing 1, antisense RNA 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-44625801-4	chr10	44625689	44625889	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-167041.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-138167058-2	chr6	138166958	138167158	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	25471.0	NM_001361309	56615.0	Mm.14796	NM_019946	ENSMUSG00000008540	Mgst1	1500002K10Rik|Gst	microsomal glutathione S-transferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-139377593-4	chr7	139377481	139377681	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11528.0	NM_183144	212111.0	Mm.28308	NM_183144	ENSMUSG00000025477	Inpp5a	-	inositol polyphosphate-5-phosphatase A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152090339-4	chr1	152090230	152090430	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_197990)	promoter-TSS (NM_197990)	-10.0	NM_197990	69399.0	Mm.278031	NM_197990	ENSMUSG00000032666	1700025G04Rik	2610510E02Rik|2900042O04Rik	RIKEN cDNA 1700025G04 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123714857-3	chr5	123714756	123714956	+	781.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027494, intron 3 of 13)	intron (NM_027494, intron 3 of 13)	6188.0	NM_027494	70650.0	Mm.279427	NM_027494	ENSMUSG00000029427	Zcchc8	5730565F05Rik	zinc finger, CCHC domain containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91365462-2	chr16	91365362	91365562	+	592.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A3|LTR|ERVL-MaLR	-7321.0	NM_010509	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-126628123-3	chr3	126628028	126628228	+	743.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025438, intron 2 of 18)	intron (NM_001025438, intron 2 of 18)	31177.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-66359094-3	chr9	66359010	66359210	+	798.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145617, intron 1 of 77)	intron (NM_145617, intron 1 of 77)	8660.0	NM_145617	235439.0	Mm.244179	NM_145617	ENSMUSG00000038664	Herc1	2810449H11Rik|B230218H07|D130015N03Rik|tbl	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-17674968-1	chr6	17674868	17675068	+	541.0	f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-19026.0	NM_001289626	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	-0.482865479248953	-0.472114967132356	-0.306088521799205	-0.0706294018110179	-0.482198381590578	-0.471315729949621	-0.474872991213691	0.0397450499106222	-0.00403605990587462	0.998768928038576	1
Merged-chr19-37172007-2	chr19	37171907	37172107	+	967.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198300, intron 2 of 10)	(CA)n|Simple_repeat|Simple_repeat	-1836.0	NR_045329	319931.0	Mm.446730	NR_045329	ENSMUSG00000097591	A330032B11Rik	-	RIKEN cDNA A330032B11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-78257170-2	chr11	78257070	78257270	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-4584.0	NM_001002004	72503.0	Mm.237103	NM_001002004	ENSMUSG00000010277	2610507B11Rik	AU022687|D11Bhm178e|D11Bhm179e|E1|Kiaa0100|mKIAA0100	RIKEN cDNA 2610507B11 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-27196007-2	chr3	27195907	27196107	+	917.2999880000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 1 of 4)	RMER1A|Other|Other	13003.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-62841875-2	chr14	62841775	62841975	+	589.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175546, intron 1 of 11)	MTD|LTR|ERVL-MaLR	4154.0	NR_106174	102465889.0		NR_106174	ENSMUSG00000099245	Mir8098	Gm27462|mmu-mir-8098	microRNA 8098	ncRNA	-1.43172712806865	-1.3992492906874	-1.40907085678131	-1.41713858359971	-0.932192548427885	-1.39712091634321	-1.40684746950024	-1.41569446435649	2.19283191591698	0.528233640655333	1
Merged-chr17-46783640-2	chr17	46783540	46783740	+	564.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025433)	promoter-TSS (NM_025433)	-984.0	NM_025433	66229.0	Mm.218533	NM_025433	ENSMUSG00000063888	Rpl7l1	1500016H10Rik	ribosomal protein L7-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114738867-1	chr11	114738767	114738967	+	1000.0	f1_balb.idr	intron (NM_001034878, intron 5 of 12)	intron (NM_001034878, intron 5 of 12)	11455.0	NM_001034878	432611.0	Mm.212764	NM_001034878	ENSMUSG00000034706	Dnaic2	C030015H18Rik|Dnai2|Gm728|b2b3405Clo	dynein, axonemal, intermediate chain 2	protein-coding	-2.18375600819439	-2.15556918946382	-2.16409311609999	-2.17109492323169	-2.18177734563694	-2.01960173909294	-2.16216348594872	-2.16984160310277	0.759018020146679	0.829933115115583	1
Merged-chr9-116169227-2	chr9	116169133	116169333	+	676.5	f0_balb.idr|f1_balb.idr	intron (NM_009371, intron 1 of 7)	intron (NM_009371, intron 1 of 7)	6130.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	1.29035196239984	2.1468523932267	3.26527133617534	2.54138947429536	2.20152466398468	2.4823768540006	3.22656307843197	2.17991975890276	0.172576708415572	0.848147969606991	0.998431161219273
Merged-chr17-56990265-4	chr17	56990182	56990382	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017393)	promoter-TSS (NM_017393)	18.0	NM_017393	53895.0	Mm.287892	NM_017393	ENSMUSG00000002660	Clpp	AU019820|D17Wsu160e	caseinolytic mitochondrial matrix peptidase proteolytic subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-32539436-4	chr9	32539354	32539554	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008026, intron 1 of 8)	intron (NM_008026, intron 1 of 8)	1998.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-93444924-3	chr1	93444825	93445025	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133808, intron 1 of 27)	intron (NM_133808, intron 1 of 27)	776.0	NM_001301364	110611.0	Mm.30012	NM_133808	ENSMUSG00000034088	Hdlbp	1110005P14Rik|AA960365|AI118566|D1Ertd101e	high density lipoprotein (HDL) binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-15126859-3	chr3	15126745	15126945	+	604.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	155644.0	NR_040550	77127.0	Mm.195792	NR_040549	ENSMUSG00000098008	A930001A20Rik	-	RIKEN cDNA A930001A20 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-11555636-1	chr2	11555536	11555736	+	546.0	f1_c57bl6.idr	Intergenic	RLTR9F|LTR|ERVK	-1707.0	NM_001177758	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53079376-9	chr4	53079381	53079581	+	792.351868	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 18 of 49)	intron (NM_013454, intron 18 of 49)	67601.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-193600083-1	chr1	193599983	193600183	+	819.5	f0_balb.idr	Intergenic	BLACKJACK|DNA|hAT-Blackjack	-92553.0	NR_029592	387201.0		NR_029592	ENSMUSG00000065533	Mir205	Mirn205|mir-205|mmu-mir-205	microRNA 205	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-183436626-1	chr1	183436526	183436726	+	951.0	f1_balb.idr	3' UTR (NM_030175, exon 9 of 9)	3' UTR (NM_030175, exon 9 of 9)	17378.0	NM_001308052	78772.0	Mm.29003	NM_030175	ENSMUSG00000053461	Hhipl2	4930507C10Rik|AW208802|Hhip3	hedgehog interacting protein-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-54676754-4	chr9	54676651	54676851	+	795.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14866.0	NM_053178	94180.0	Mm.20592	NM_053178	ENSMUSG00000032281	Acsbg1	BG1|Bgm|E230019G03Rik|GR-LACS|Lpd|R75185	acyl-CoA synthetase bubblegum family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-35117170-3	chr7	35117046	35117246	+	952.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2147.0	NM_001287521	12606.0	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	-1.18222045008182	-0.978438292940914	-1.16770109385923	-1.17699121268927	-1.18171183814936	-0.648785584566264	-1.16514082719289	-1.17532828586041	1.59252109794841	0.622914666369258	1
Merged-chr18-61109691-2	chr18	61109591	61109791	+	997.7000119999999	f1_balb.idr|f1_c57bl6.idr	exon (NM_001037859, exon 3 of 22)	exon (NM_001037859, exon 3 of 22)	4119.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-136200026-2	chr4	136199908	136200108	+	659.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6357.0	NM_001008232	230837.0	Mm.77788	NM_001008232	ENSMUSG00000036995	Asap3	9430088F20Rik|Ddefl1|Gm140|UPLC1	ArfGAP with SH3 domain, ankyrin repeat and PH domain 3	protein-coding	2.83263670141805	2.62577326152473	3.07269841866498	3.46369740279388	2.67976368091095	2.32253447477185	1.54517969259676	3.36285274618489	-0.698222419966402	0.371657349018186	0.864510444653005
Merged-chr3-51396676-4	chr3	51396583	51396783	+	881.18335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026358)	promoter-TSS (NM_026358)	-136.0	NM_026358	67749.0	Mm.273339	NM_026358	ENSMUSG00000037161	Mgarp	4930583H14Rik|AI195347|CESP-1|HUMMR|Osap|Qsap	mitochondria localized glutamic acid rich protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-90695544-2	chr5	90695444	90695644	+	953.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55017.0	NM_001310656	73246.0	Mm.30172	NM_028478	ENSMUSG00000029370	Rassf6	1600016B17Rik	Ras association (RalGDS/AF-6) domain family member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-144283812-4	chr5	144283731	144283931	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025833, intron 7 of 13)	Kanga2_a|DNA|TcMar-Tc2	6770.0	NR_040432	100504231.0	Mm.441035	NR_040432	ENSMUSG00000086894	Gm15708	-	predicted gene 15708	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-120915294-4	chr9	120915181	120915381	+	883.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040742)	promoter-TSS (NR_040742)	-31.0	NR_040742	76402.0	Mm.436588	NR_040742	ENSMUSG00000100146	1700020M21Rik	-	RIKEN cDNA 1700020M21 gene	ncRNA	1.00416558577103	1.28491803572157	0.515375448932187	0.508320205339198	0.910255374055434	1.18530163697253	0.710625051435904	0.509555422162572	-0.117399119016162	0.94312079660905	1
Merged-chr11-21082908-4	chr11	21082794	21082994	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8430.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-93256904-4	chr10	93256808	93257008	+	928.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001282967, intron 2 of 3)	intron (NM_001282967, intron 2 of 3)	54251.0	NM_001322268	13713.0	Mm.4454	NM_013508	ENSMUSG00000008398	Elk3	D430049E23Rik|Erp|Etrp|Net|Sap-2	ELK3, member of ETS oncogene family	protein-coding	2.84265816318087	1.48850623606549	1.72919913614517	3.09537660331067	2.86831682647428	4.04155810141743	1.99413732568177	3.89252223791882	1.5963513878548	0.0554927544960422	0.346290950993506
Merged-chr8-31033534-3	chr8	31033449	31033649	+	676.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55978.0	NM_025869	66959.0	Mm.23916	NM_025869	ENSMUSG00000039661	Dusp26	2310043K02Rik|Skrp3	dual specificity phosphatase 26 (putative)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106033543-3	chr11	106033441	106033641	+	942.0833130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037712, intron 12 of 12)	IAPLTR1_Mm|LTR|ERVK	-3331.0	NM_027946	71833.0	Mm.307455	NM_027946	ENSMUSG00000049354	Dcaf7	1700012F10Rik|2610037L01Rik|C86529|HAN11|Wdr68	DDB1 and CUL4 associated factor 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80603770-2	chr10	80603670	80603870	+	894.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_019575, intron 1 of 6)	intron (NM_019575, intron 1 of 6)	888.0	NM_019575	56214.0	Mm.273170	NM_019575	ENSMUSG00000113949	Scamp4	2410022D05Rik|AI448940|AU022392|AW742369|Sc4	secretory carrier membrane protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-51401363-4	chr13	51401260	51401460	+	991.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7258.0	NM_010101	13610.0	Mm.136736	NM_010101	ENSMUSG00000067586	S1pr3	AI132464|Edg3|Lpb3|S1p3	sphingosine-1-phosphate receptor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-119613864-3	chr13	119613784	119613984	+	848.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	-9935.0	NM_020279	56838.0	Mm.143745	NM_020279	ENSMUSG00000074715	Ccl28	CCK1|MEC|Scya28	chemokine (C-C motif) ligand 28	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-163975285-4	chr1	163975188	163975388	+	957.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357049, intron 10 of 24)	intron (NM_001357049, intron 10 of 24)	19508.0	NM_001357049	381306.0	Mm.28152	NM_201364	ENSMUSG00000041406	BC055324	-	cDNA sequence BC055324	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-92392585-2	chr16	92392485	92392685	+	574.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001081549, exon 4 of 4)	3' UTR (NM_001081549, exon 4 of 4)	7493.0	NM_019466	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-25423265-4	chr2	25423182	25423382	+	918.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013524)	promoter-TSS (NM_013524)	40.0	NM_001289456	14347.0	Mm.1203	NM_013524	ENSMUSG00000036587	Fut7	AI853193|FTVII|Fuc-TVII|FucT-VII	fucosyltransferase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-98060038-4	chr3	98059930	98060130	+	936.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010928, intron 2 of 33)	intron (NM_010928, intron 2 of 33)	46492.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56072450-2	chr17	56072350	56072550	+	926.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_024432, exon 5 of 12)	exon (NM_024432, exon 5 of 12)	6883.0	NM_024432	66530.0	Mm.28000	NM_024432	ENSMUSG00000019578	Ubxn6	1200008L11Rik|2210415J11Rik|AU040909|Ubxd1|Ubxdc2	UBX domain protein 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24007130-4	chr17	24007029	24007229	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9029.0	NM_133731	70835.0	Mm.157351	NM_133731	ENSMUSG00000045027	Prss22	4733401N09Rik|BSSP-4|SP001LA	protease, serine 22	protein-coding	7.23885670107608	6.41989556859726	6.30220491468032	6.62914626647233	6.45029349391098	6.54469073374162	7.12016987422696	6.55140603319984	-0.0151889285139746	0.949179288226779	0.998431161219273
Merged-chr5-130846445-2	chr5	130846345	130846545	+	914.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F1|SINE|Alu	397653.0	NM_021371	140904.0	Mm.40875	NM_021371	ENSMUSG00000060371	Caln1	9630012C17Rik|Cabp8|MNCb-0849	calneuron 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-59295378-2	chr10	59295278	59295478	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27918.0	NM_001316371	18451.0	Mm.2212	NM_011030	ENSMUSG00000019916	P4ha1	AL022634|P4ha	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-161897843-2	chr1	161897745	161897945	+	869.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-21163.0	NM_001357402	226551.0	Mm.170002	NM_172645	ENSMUSG00000040297	Suco	4732491B11|AI848100|AU016931|Opt	SUN domain containing ossification factor	protein-coding	-0.0393155660804084	0.513100413306918	-0.0258036330932949	-0.0308595071076941	-0.0380525448042251	0.871360147258216	-0.0243633458959597	0.306397442878403	1.42018124120759	0.521320219160595	1
Merged-chr1-178146700-3	chr1	178146604	178146804	+	691.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155538, intron 17 of 21)	intron (NR_155538, intron 17 of 21)	-40713.0	NM_024282	78825.0	Mm.440132	NM_024282	ENSMUSG00000026502	Desi2	5830417C01Rik|DeSI-2|Fam152a|Pppde1	desumoylating isopeptidase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-31055218-2	chr6	31055118	31055318	+	669.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4_|SINE|ID	7529.0	NR_029744	387222.0		NR_029744	ENSMUSG00000065610	Mir29a	Mirn29a|mir-29a|mmu-mir-29a	microRNA 29a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-116908608-2	chr2	116908508	116908708	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_040335, intron 2 of 3)	intron (NR_040335, intron 2 of 3)	8456.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-20861396-4	chr14	20861298	20861498	+	930.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1D-int|LTR|ERVL-MaLR	24736.0	NM_008873	18792.0	Mm.4183	NM_008873	ENSMUSG00000021822	Plau	u-PA|uPA	plasminogen activator, urokinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-155122856-3	chr4	155122780	155122980	+	952.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356327, intron 10 of 12)	intron (NM_001356327, intron 10 of 12)	36276.0	NM_001356327	76866.0	Mm.200590	NM_001081100	ENSMUSG00000029049	Morn1	2900057D20Rik|4930417P05Rik|AU042805	MORN repeat containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-32455918-4	chr11	32455830	32456030	+	959.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361561, intron 1 of 1)	CpG	560.0	NM_173784	327900.0	Mm.260956	NM_173784	ENSMUSG00000044949	Ubtd2	4930571L24|9630054F20Rik|AI645720	ubiquitin domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-80547382-1	chr9	80547282	80547482	+	1000.0	f0_balb.idr	Intergenic	Intergenic	-81944.0	NM_022016	63859.0	Mm.422780	NM_022016	ENSMUSG00000032343	Impg1	A930015H12Rik|IMP150|SPACR	interphotoreceptor matrix proteoglycan 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-13267638-4	chr1	13267465	13267665	+	887.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008678, intron 2 of 22)	(CCG)n|Simple_repeat|Simple_repeat	104864.0	NM_001302702	17978.0	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	3.35523389080509	3.5847910035301	1.38296760173338	1.84562135003395	2.36006561745105	3.00877812769716	2.69596156194088	1.85611664873037	-0.591428826949541	0.511161827058917	0.94512318675548
Merged-chr19-60467852-2	chr19	60467724	60467924	+	761.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_201615, exon 1 of 1)	exon (NM_201615, exon 1 of 1)	480.0	NM_201615	226278.0	Mm.377241	NM_201615	ENSMUSG00000045052	Prlhr	Gm339|Gpr10|Gr3|Prrpr	prolactin releasing hormone receptor	protein-coding	2.0541786275653	1.26824440735512	2.51359625954371	2.05628670869139	2.33342693807447	1.27418195431819	2.24818480221243	2.06696169061446	-0.0123170606430778	0.990580515309997	0.998431161219273
Merged-chr4-141652318-6	chr4	141652162	141652362	+	889.283325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347237, intron 1 of 18)	intron (NM_001347237, intron 1 of 18)	11853.0	NM_001347237	69582.0	Mm.33220	NM_001033150	ENSMUSG00000028917	Plekhm2	2310034J19Rik|AI854247|mKIAA0842	pleckstrin homology domain containing, family M (with RUN domain) member 2	protein-coding	1.90362157006922	2.61227079669593	1.1047094105025	2.92560490233285	1.64666845944895	2.53641318189962	1.38821803818714	1.0827148981855	-1.19919947122033	0.281212058435743	0.78400185225177
Merged-chr17-55955266-2	chr17	55955166	55955366	+	949.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_108021, exon 3 of 3)	non-coding (NR_108021, exon 3 of 3)	2643.0	NM_015766	50498.0	Mm.256798	NM_015766	ENSMUSG00000003206	Ebi3	EBI-3|IL-27	Epstein-Barr virus induced gene 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-29534050-2	chr6	29533950	29534150	+	611.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_012057, exon 3 of 9)	exon (NM_012057, exon 3 of 9)	4768.0	NM_001252382	27056.0	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-98241860-2	chr13	98241760	98241960	+	623.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	21132.0	NM_178918	105372.0	Mm.28221	NM_178918	ENSMUSG00000041747	Utp15	AW544865	UTP15 small subunit processome component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-83727715-3	chr9	83727617	83727817	+	927.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36242.0	NR_046066	100039222.0	Mm.405596	NR_046066	ENSMUSG00000100155	Gm2109	-	predicted gene 2109	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-59554881-4	chr11	59554758	59554958	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153314, intron 5 of 9)	intron (NR_153314, intron 5 of 9)	12172.0	NR_153314	216799.0	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-60120875-4	chr2	60120754	60120954	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001182, intron 1 of 35)	intron (NM_001001182, intron 1 of 35)	4886.0	NM_001001182	407823.0	Mm.228071	NM_001001182	ENSMUSG00000026987	Baz2b	5830435C13Rik|BC053917|D2Ertd794e	bromodomain adjacent to zinc finger domain, 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-170002784-4	chr2	170002683	170002883	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	YREP_Mm|Unknown|Unknown	-39596.0	NR_131974	446211.0	Mm.266854	NR_131974	ENSMUSG00000103935	AY702102	STDP1	cDNA sequence AY702102	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-9082846-3	chr9	9082751	9082951	+	863.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027823, intron 4 of 22)	LTR16E2|LTR|ERVL	-153437.0	NR_045754	100579151.0	Mm.412450	NR_045754	ENSMUSG00000085253	Gm16833	-	predicted gene, 16833	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-91182769-3	chr10	91182645	91182845	+	787.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11126.0	NM_001080130	21917.0	Mm.159684	NM_011605	ENSMUSG00000019961	Tmpo	5630400D24Rik|AI195756|AI606875|AW214352|AW547477|LAP2|TP	thymopoietin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-119430681-3	chr6	119430542	119430742	+	732.266663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-13114.0	NM_197985	68465.0	Mm.291826	NM_197985	ENSMUSG00000030168	Adipor2	1110001I14Rik|ADCR2|AI115388|AW554121|D6Ucla1e|Paqr2	adiponectin receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-59455677-4	chr4	59455571	59455771	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17038.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-73325434-4	chr14	73325343	73325543	+	913.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009029, intron 1 of 26)	CpG	379.0	NM_009029	19645.0	Mm.273862	NM_009029	ENSMUSG00000022105	Rb1	Rb|Rb-1|pRb|pp105	RB transcriptional corepressor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-80059988-2	chr15	80059815	80060015	+	823.0	f0_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18664.0	NR_028282	100302601.0		NR_028282	ENSMUSG00000077734	Snord83b	MBII-10	small nucleolar RNA, C/D box 83B	snoRNA	-2.05752322593321	-2.15521190974092	-2.16307242109104	-2.16952927915413	-2.17938029103484	-2.15350850414045	-2.16129297361887	-2.16837350464794	-0.683654500252594	0.846597994014493	1
Merged-chr10-60401495-2	chr10	60401395	60401595	+	619.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164374, intron 1 of 1)	intron (NM_001164374, intron 1 of 1)	1769.0	NM_001164374	100302688.0	Mm.444135	NM_001164374	ENSMUSG00000090439	Gm17455	-	predicted gene, 17455	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-79877336-4	chr10	79877222	79877422	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 3 of 4)	intron (NR_038088, intron 3 of 4)	-2345.0	NM_011178	19152.0	Mm.2364	NM_011178	ENSMUSG00000057729	Prtn3	PR3|mPR3	proteinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-177805197-2	chr1	177805097	177805297	+	611.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8688.0	NM_007422	11566.0	Mm.338021	NM_007422	ENSMUSG00000015961	Adss	AI314886|AS|Adss2	adenylosuccinate synthetase, non muscle	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-155672166-2	chr4	155672066	155672266	+	604.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2B|LTR|ERVL	-2912.0	NM_001256107	76580.0	Mm.235738	NM_145124	ENSMUSG00000029060	Mib2	2210008I11Rik|Zzank1|skd	mindbomb E3 ubiquitin protein ligase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-118728528-4	chr2	118728426	118728626	+	940.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290790)	promoter-TSS (NM_001290790)	-88.0	NM_001290790	18796.0	Mm.215156	NM_177568	ENSMUSG00000040061	Plcb2	AI550384|B230205M18Rik|B230399N12	phospholipase C, beta 2	protein-coding	0.390699955163176	0.990900206268111	0.412801349912746	0.404580384509102	1.51414670698299	0.425657868093836	0.627962920615233	1.14211987966401	2.16539529556034	0.224594879588725	0.716302896348785
Merged-chr3-87504495-3	chr3	87504352	87504552	+	664.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21126.0	NM_001083318	27049.0	Mm.219460	NM_012051	ENSMUSG00000003382	Etv3	AI414410|METS|Pe1	ets variant 3	protein-coding	3.3832443431004	2.67792253879556	2.69934398399639	2.26235347026577	2.84938232626812	2.0697757394485	2.18708674847647	2.52868459078872	-0.75437877743357	0.328280212950961	0.83060016764775
Merged-chr10-44669084-3	chr10	44668963	44669163	+	806.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	-210315.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-95513772-2	chr11	95513583	95513783	+	721.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_130858, intron 1 of 1)	CpG	882.0	NM_130858	104079.0	Mm.22970	NM_130858	ENSMUSG00000046719	Nxph3	-	neurexophilin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-112952665-2	chr12	112952565	112952765	+	983.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10523.0	NM_001316724	66174.0	Mm.7070	NM_025399	ENSMUSG00000002804	Nudt14	1110030M18Rik|UGPPase	nudix (nucleoside diphosphate linked moiety X)-type motif 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-85636410-2	chr18	85636310	85636510	+	620.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger17a|DNA|TcMar-Tigger	-684886.0	NM_025969	67105.0	Mm.250617	NM_025969	ENSMUSG00000024645	Timm21	1700034H14Rik|2700002I20Rik	translocase of inner mitochondrial membrane 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-89061596-4	chr11	89061507	89061707	+	854.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019505)	promoter-TSS (NM_019505)	856.0	NR_110336	414094.0	Mm.124287	NM_001001497		Dgkeos	A930013B10Rik	diacylglycerol kinase, epsilon, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70003986-1	chr8	70003886	70004086	+	579.0	f1_balb.idr	Intergenic	B1_Mm|SINE|Alu	-7602.0	NM_145596	234366.0	Mm.270044	NM_145596	ENSMUSG00000036180	Gatad2a	1110066C11Rik|BC031407|C80248	GATA zinc finger domain containing 2A	protein-coding	2.14060371159253	3.19065435546206	2.54942606840715	2.47328057842447	2.35936847834195	1.28028617468335	1.24437349950403	1.68517594274555	-2.08557838812226	0.0336165071452793	0.257664514094375
Merged-chr18-20749594-3	chr18	20749508	20749708	+	882.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3204.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-88950414-4	chr11	88950310	88950510	+	919.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029023, intron 2 of 12)	intron (NM_029023, intron 2 of 12)	5032.0	NM_029023	74617.0	Mm.34126	NM_029023	ENSMUSG00000000278	Scpep1	2410018F01Rik|4833411K15Rik|AI957256|Risc	serine carboxypeptidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-20023982-2	chr3	20023882	20024082	+	747.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_080634, intron 5 of 16)	intron (NM_080634, intron 5 of 16)	11328.0	NM_001146324	12807.0	Mm.291533	NM_080634	ENSMUSG00000027615	Hps3	coa	HPS3, biogenesis of lysosomal organelles complex 2 subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123027738-4	chr5	123027660	123027860	+	926.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175423, intron 1 of 1)	intron (NM_175423, intron 1 of 1)	12686.0	NM_175423	109305.0	Mm.218582	NM_175423	ENSMUSG00000049686	Orai1	D730049H07Rik|Tmem142a|orai-1	ORAI calcium release-activated calcium modulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85462145-2	chr12	85462045	85462245	+	789.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11745.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120915110-2	chr11	120915010	120915210	+	667.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027745, intron 3 of 18)	ERVL-int|LTR|ERVL	17762.0	NM_027745	71276.0	Mm.275751	NM_027745	ENSMUSG00000048445	Ccdc57	4933434G05Rik	coiled-coil domain containing 57	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-29434247-2	chr6	29434147	29434347	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081185, intron 1 of 47)	intron (NM_001081185, intron 1 of 47)	991.0	NM_001311074	68794.0	Mm.39046	NM_026839	ENSMUSG00000068699	Flnc	1110055E19Rik|ABP-280|ABPL|Fln2	filamin C, gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114809725-2	chr11	114809625	114809825	+	712.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10801.0	NM_181749	217302.0	Mm.269127	NM_181749	ENSMUSG00000034677	Gpr142	PGR2	G protein-coupled receptor 142	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-118758209-4	chr12	118758079	118758279	+	987.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-88150.0	NM_177082	320145.0	Mm.51682	NM_177082	ENSMUSG00000048562	Sp8	D930049B17Rik|mBtd	trans-acting transcription factor 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-92915376-2	chr14	92915276	92915476	+	635.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	975293.0	NM_001271800	211712.0	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-65991334-3	chr3	65991306	65991506	+	801.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F1|SINE|Alu	-33157.0	NM_001355432	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	1.41455956558491	2.14982739517809	1.09396475117188	2.49649168087081	1.42538237840296	1.76449473734984	1.53777053759569	2.0210560486345	-0.599975798050488	0.58568380012578	0.967449368090758
Merged-chr12-119170350-2	chr12	119170250	119170450	+	601.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177290, intron 10 of 13)	intron (NM_177290, intron 10 of 13)	67926.0	NM_177290	320910.0	Mm.217000	NM_177290	ENSMUSG00000025321	Itgb8	4832412O06Rik	integrin beta 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36561279-4	chr18	36561191	36561391	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175375, intron 1 of 33)	CpG-6857	688.0	NM_175375	108857.0	Mm.482287	NM_175375	ENSMUSG00000024483	Ankhd1	1110004O12Rik|4933432B13Rik|9130019P20Rik|A530027J04Rik|A630021B20Rik|AA571404|Mask|mFLJ00246|mKIAA1085	ankyrin repeat and KH domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5467000-4	chr17	5466899	5467099	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	16070.0	NR_073378	666919.0		NR_073378		Gm8363	EG666919	non-SMC condensin II complex, subunit H2 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-59753548-2	chr9	59753448	59753648	+	800.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173018, intron 1 of 43)	intron (NM_173018, intron 1 of 43)	2374.0	NM_173018	270163.0	Mm.249545	NM_173018	ENSMUSG00000039585	Myo9a	4732465J09Rik|C130068I12Rik|C230003M11	myosin IXa	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-65505135-4	chr18	65505016	65505216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_105742, intron 3 of 6)	intron (NR_105742, intron 3 of 6)	74119.0	NM_172833	240354.0	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	3.83355950889196	3.91309424044806	4.76647337471726	4.98650509974552	5.19453921233419	5.19237355920394	4.92634312104693	5.3867105430195	0.86822704493898	0.0204080374411619	0.181790598604448
Merged-chr14-65100613-4	chr14	65100521	65100721	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2515.0	NM_001360385	54616.0	Mm.103748	NM_018788	ENSMUSG00000021978	Extl3	2900009G18Rik|AU040105|Ext1l|mKIAA0519	exostoses (multiple)-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-147064560-1	chr3	147064460	147064660	+	649.0	f0_balb.idr	Intergenic	Intergenic	212193.0	NM_001302957	70892.0	Mm.187793	NM_027594	ENSMUSG00000036745	Ttll7	1110049N09Rik|4921517B04Rik|C630030B20|mTTLL7	tubulin tyrosine ligase-like family, member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-106999251-2	chr8	106999151	106999351	+	623.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009229, intron 4 of 6)	intron (NM_009229, intron 4 of 6)	-32075.0	NM_126165	116733.0	Mm.236004	NM_126165	ENSMUSG00000031913	Vps4a	4930589C15Rik|AI325971|AW553189	vacuolar protein sorting 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167778412-2	chr2	167778312	167778512	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	87235.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98782769-4	chr11	98782643	98782843	+	744.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7366.0	NM_145434	217166.0	Mm.390397	NM_145434	ENSMUSG00000020889	Nr1d1	A530070C09Rik|R75201	nuclear receptor subfamily 1, group D, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-73467184-4	chr13	73467076	73467276	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145376)	promoter-TSS (NM_145376)	-207.0	NM_145376	210992.0	Mm.284649	NM_145376	ENSMUSG00000021608	Lpcat1	2900035H07Rik|Aytl2|BB137372|BC005662|C87117|LPCAT|rd11	lysophosphatidylcholine acyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-11102119-4	chr19	11102034	11102234	+	990.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027058, intron 5 of 6)	intron (NM_027058, intron 5 of 6)	-21031.0	NM_022430	64381.0	Mm.34460	NM_022430	ENSMUSG00000024730	Ms4a8a	2010004L09Rik|AI481240|CD20L5|Ms4a8	membrane-spanning 4-domains, subfamily A, member 8A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167493090-4	chr2	167492942	167493142	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_170756)	promoter-TSS (NM_170756)	-168.0	NM_001356523	263876.0	Mm.34342	NM_170756	ENSMUSG00000047030	Spata2	AI504642|mKIAA0757	spermatogenesis associated 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-36628061-2	chr16	36627961	36628161	+	599.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019388, intron 2 of 7)	intron (NM_019388, intron 2 of 7)	38016.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-62042619-2	chr15	62042519	62042719	+	659.666626	f1_balb.idr|f1_c57bl6.idr	intron (NR_132746, intron 1 of 6)	B1_Mur4|SINE|Alu	3362.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-60711553-2	chr18	60711453	60711653	+	869.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001348100, intron 2 of 14)	intron (NM_001348100, intron 2 of 14)	16013.0	NM_001348103	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-45736647-2	chr11	45736547	45736747	+	630.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-71436.0	NR_045876	100009664.0	Mm.415439	NR_045876		F630206G17Rik	-	RIKEN cDNA F630206G17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-32121984-2	chr14	32121884	32122084	+	980.599976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20039.0	NM_020597	17695.0	Mm.2540	NM_020597	ENSMUSG00000021907	Msmb	PIP|PSP94|beta-MSP	beta-microseminoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4201703-4	chr19	4201596	4201796	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011237)	promoter-TSS (NM_011237)	-93.0	NM_011237	19367.0	Mm.277629	NM_011237	ENSMUSG00000024824	Rad9a	Rad9	RAD9 checkpoint clamp component A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-146758119-4	chr5	146758021	146758221	+	932.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011669, intron 3 of 8)	intron (NM_011669, intron 3 of 8)	36835.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-65177670-4	chr1	65177586	65177786	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111320, intron 1 of 8)	intron (NM_001111320, intron 1 of 8)	1456.0	NM_010497	15926.0	Mm.9925	NM_010497	ENSMUSG00000025950	Idh1	AI314845|AI788952|E030024J03Rik|Id-1|Idh-1|Idpc	isocitrate dehydrogenase 1 (NADP+), soluble	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-82821020-2	chr18	82820920	82821120	+	628.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34877.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-107119409-2	chr4	107119309	107119509	+	609.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22518.0	NM_172873	242603.0	Mm.257231	NM_172873	ENSMUSG00000047636	Cdcp2	D030010E02Rik	CUB domain containing protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-17815479-3	chr5	17815370	17815570	+	872.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159557, intron 5 of 15)	intron (NM_001159557, intron 5 of 15)	20426.0	NM_001159555	12491.0	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 molecule	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-89146478-3	chr4	89146372	89146572	+	797.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024433, intron 1 of 7)	intron (NM_024433, intron 1 of 7)	9102.0	NM_024433	66902.0	Mm.28500	NM_024433	ENSMUSG00000062937	Mtap	1300019I21Rik|MSAP	methylthioadenosine phosphorylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152524533-2	chr1	152524433	152524633	+	911.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 16 of 17)	intron (NM_016846, intron 16 of 17)	100684.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-23305839-4	chr11	23305705	23305905	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1090.0	NM_001190401	17847.0	Mm.119155	NM_001190401	ENSMUSG00000056342	Usp34	A530081C03Rik|Murr2	ubiquitin specific peptidase 34	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-82795753-3	chr3	82795617	82795817	+	765.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M3e|LINE|L1	80766.0	NM_001277170	633285.0	Mm.265114	NM_001146328	ENSMUSG00000033882	Rbm46	EG633285|Gm761	RNA binding motif protein 46	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44844460-1	chr7	44844360	44844560	+	620.0	f1_balb.idr	intron (NM_001042655, intron 7 of 16)	intron (NM_001042655, intron 7 of 16)	4619.0	NM_001042655	233204.0	Mm.27567	NM_144924	ENSMUSG00000038520	Tbc1d17	BC017607	TBC1 domain family, member 17	protein-coding	-0.700064241511417	-0.186671140929496	-0.692852367725508	-0.695563882069579	-0.699394869705802	-0.177296101845517	-0.692077155152847	-0.695090216270211	0.0394491945098347	0.989215944639676	1
Merged-chr16-30466110-4	chr16	30465988	30466188	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-77558.0	NM_001128096	224088.0	Mm.8924	NM_001128094	ENSMUSG00000022533	Atp13a3	AU022875|Gm1745|Gm541|Gm542	ATPase type 13A3	protein-coding	2.80858590611892	3.0548566413113	2.75723613123766	2.95718921652564	2.56444577461111	2.87334179344341	1.56609931448421	2.97209324469439	-0.563904108177932	0.456708181037786	0.919264728457769
Merged-chr4-126110196-2	chr4	126110134	126110334	+	973.25	f0_balb.idr|f0_c57.idr	intron (NM_028800, intron 1 of 10)	intron (NM_028800, intron 1 of 10)	6277.0	NM_001145827	74178.0	Mm.440269	NM_028800	ENSMUSG00000042608	Stk40	2310004N11Rik|AI428792	serine/threonine kinase 40	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-53845117-4	chr1	53845010	53845210	+	904.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001883, intron 21 of 28)	MTC|LTR|ERVL-MaLR	-4314.0	NR_106149	102465783.0		NR_106149	ENSMUSG00000098443	Mir7681	Gm27806|mmu-mir-7681	microRNA 7681	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-102570487-4	chr4	102570368	102570568	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001177980, exon 1 of 10)	5' UTR (NM_001177980, exon 1 of 10)	408.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-53877634-4	chr18	53877526	53877726	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152809, intron 1 of 12)	intron (NM_152809, intron 1 of 12)	15513.0	NM_152809	70425.0	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67049013-4	chr10	67048917	67049117	+	945.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178606, intron 2 of 7)	intron (NM_178606, intron 2 of 7)	43942.0	NR_110511	102634101.0	Mm.445258	NR_110511	ENSMUSG00000112925	Gm31763	-	predicted gene, 31763	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-58516884-4	chr3	58516787	58516987	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8934.0	NM_001005509	229317.0	Mm.21617	NM_001005509	ENSMUSG00000027810	Eif2a	D030048D22|D3Ertd194e	eukaryotic translation initiation factor 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-33354776-2	chr8	33354676	33354876	+	824.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001122822, intron 1 of 33)	MTC|LTR|ERVL-MaLR	30751.0	NM_001122822	22427.0	Mm.228805	NM_011721	ENSMUSG00000031583	Wrn	AI846146	Werner syndrome RecQ like helicase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16816812-4	chr7	16816734	16816934	+	964.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173430)	promoter-TSS (NM_173430)	-102.0	NM_173430	243853.0	Mm.39703	NM_173430	ENSMUSG00000048920	Fkrp	A830029B19Rik|AI842067|AI847300|LGMD1I|MDC1C	fukutin related protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-86612050-2	chr11	86611950	86612150	+	807.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356531, intron 7 of 11)	intron (NM_001356531, intron 7 of 11)	-27892.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-6357253-4	chr4	6357159	6357359	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-8421.0	NM_016807	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98328499-2	chr11	98328399	98328599	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010895, intron 1 of 1)	CpG	1146.0	NM_010895	18013.0	Mm.4814	NM_010895	ENSMUSG00000038255	Neurod2	Ndrf|bHLHa1	neurogenic differentiation 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-30604266-4	chr16	30604152	30604352	+	931.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4529.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-52457442-3	chr2	52457336	52457536	+	809.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037099, intron 9 of 13)	intron (NM_001037099, intron 9 of 13)	-32562.0	NM_182994	75423.0	Mm.314378	NM_182994	ENSMUSG00000036093	Arl5a	2410015N24Rik|2810410P22Rik|AA408731|AW610751|Arl5|T25534	ADP-ribosylation factor-like 5A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-116800264-2	chr4	116800164	116800364	+	912.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146151, intron 5 of 10)	MT2B1|LTR|ERVL	7295.0	NM_026654	68276.0	Mm.30534	NM_026654	ENSMUSG00000028688	Toe1	4930584N22Rik|4933424D16Rik|AI413517	target of EGR1, member 1 (nuclear)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-174436457-4	chr2	174436278	174436478	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022325, intron 2 of 5)	intron (NM_022325, intron 2 of 5)	2661.0	NM_022325	64138.0	Mm.156919	NM_022325	ENSMUSG00000016256	Ctsz	AI787083|AU019819|CTSX|D2Wsu143e	cathepsin Z	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-55490445-5	chr12	55490381	55490581	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010907, exon 5 of 6)	exon (NM_010907, exon 5 of 6)	2166.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-113631781-2	chr3	113631681	113631881	+	583.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1632.0	NM_001038696	67225.0	Mm.316928	NM_026043	ENSMUSG00000027981	Rnpc3	2810441O16Rik|AI447568|C030014B17Rik	RNA-binding region (RNP1, RRM) containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-52844221-4	chr3	52844149	52844349	+	934.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	83417.0	NR_040555	622124.0	Mm.389434	NR_040555	ENSMUSG00000104401	Gm20750	-	predicted gene, 20750	ncRNA	-1.5061220274826	-1.47360709383584	-1.48343987814663	-1.49151681994238	-1.50383953926072	-1.47147628845725	-1.0170701920923	-1.49007105122263	2.15652851593596	0.535359572134045	1
Merged-chr2-167574786-2	chr2	167574686	167574886	+	634.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36591.0	NM_011427	20613.0	Mm.2093	NM_011427	ENSMUSG00000042821	Snai1	Sna|Sna1|Snail|Snail1	snail family zinc finger 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-123984713-2	chr9	123984613	123984813	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-6305.0	NM_007718	12770.0	Mm.423532	NM_007718	ENSMUSG00000064039	Ccr1l1	Cmkbr1l1	chemokine (C-C motif) receptor 1-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-92059659-4	chr2	92059573	92059773	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-35503.0	NM_011957	26427.0	Mm.10353	NM_011957	ENSMUSG00000027230	Creb3l1	Oasis	cAMP responsive element binding protein 3-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-118854505-4	chr14	118854329	118854529	+	948.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021386)	promoter-TSS (NM_021386)	-521.0	NM_021386	58187.0	Mm.390755	NM_021386	ENSMUSG00000022132	Cldn10	6720456I16Rik|Cldn10a|Cldn10b|D14Ertd728e	claudin 10	protein-coding	2.12078280077192	2.38011264616838	1.30483604527408	2.0002107473955	2.13826424637602	1.81120338242513	2.68572957721175	2.246095580458	0.618434765387498	0.514436882145047	0.946852175083291
Merged-chr14-118910112-4	chr14	118910034	118910234	+	992.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360412, intron 8 of 22)	PB1D10|SINE|Alu	12657.0	NM_001360413	66573.0	Mm.87456	NM_025943	ENSMUSG00000042156	Dzip1	2510025K24Rik|2810422M04Rik	DAZ interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-18431050-3	chr10	18430957	18431157	+	911.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173390, intron 1 of 6)	intron (NM_173390, intron 1 of 6)	23382.0	NM_173390	215819.0	Mm.297971	NM_173390	ENSMUSG00000039835	Nhsl1	5730409E15Rik|A630035H13Rik|A730096F01|BC013565|D10Bwg0940e|mKIAA1357	NHS-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-32187345-4	chr4	32187273	32187473	+	960.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	223266.0	NM_172688	26409.0	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding	4.47134656719558	5.13114636032134	4.10786487821036	5.18306456750388	4.66355468500588	4.5483591839357	5.05038069197165	5.46904238961162	0.231723634780892	0.544149166859002	0.955606221307715
Merged-chr19-40513206-2	chr19	40513105	40513305	+	601.25	f0_balb.idr|f1_c57bl6.idr	intron (NM_009166, intron 1 of 23)	intron (NM_009166, intron 1 of 23)	531.0	NM_178362	20411.0	Mm.210815	NM_009166	ENSMUSG00000025006	Sorbs1	2310065E01Rik|9530001P15Rik|CAP|SH3P12|Sh3d5|mKIAA1296	sorbin and SH3 domain containing 1	protein-coding	1.69353496860922	2.87988817610908	2.21937366375419	1.01920254207436	1.83344762721706	2.08476943037377	1.04882313709844	1.2758689347356	-1.27788471621872	0.266341647004027	0.769151254995423
Merged-chr5-124542045-2	chr5	124541945	124542145	+	917.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019770, intron 1 of 3)	intron (NM_019770, intron 1 of 3)	1254.0	NM_019770	56334.0	Mm.325307	NM_019770	ENSMUSG00000029390	Tmed2	1110032D12Rik|1810020N21Rik|Rnp24|Sid394|p24beta1	transmembrane p24 trafficking protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-55959837-1	chr7	55959737	55959937	+	566.0	f1_c57bl6.idr	intron (NM_023647, intron 1 of 6)	L2a|LINE|L2	2656.0	NM_001256133	93790.0	Mm.37249	NM_023647	ENSMUSG00000030452	Nipa2	2600017P10Rik|3830408P04Rik|AB041581	non imprinted in Prader-Willi/Angelman syndrome 2 homolog (human)	protein-coding	-1.29633872064033	-1.26720680975202	-1.27768629845203	-1.28629446248818	-0.70879630402184	-1.2649358608345	-1.2753139719142	-1.28475360524138	2.50884260628271	0.468217847016783	1
Merged-chr19-25607446-1	chr19	25607346	25607546	+	606.0	f0_balb.idr	Intergenic	Intergenic	-3091.0	NM_177360	240590.0	Mm.62785	NM_177360	ENSMUSG00000042372	Dmrt3	-	doublesex and mab-3 related transcription factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-117328957-3	chr3	117328849	117329049	+	771.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177664, intron 3 of 6)	intron (NM_177664, intron 3 of 6)	31927.0	NM_177664	229791.0	Mm.140138	NM_177664	ENSMUSG00000044667	Plppr4	A330086D10|D3Bwg0562e|Lppr4|PRG-1|mKIAA0455	phospholipid phosphatase related 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-124060149-2	chr9	124060049	124060249	+	797.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38178.0	NM_009914	12771.0	Mm.57050	NM_009914	ENSMUSG00000035448	Ccr3	CC-CKR3|CKR3|Cmkbr1l2|Cmkbr3	chemokine (C-C motif) receptor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-73957857-4	chr16	73957748	73957948	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358493, intron 16 of 28)	intron (NM_001358493, intron 16 of 28)	384219.0	NR_030464	751561.0		NR_030464	ENSMUSG00000104758	Mir691	Mirn691|mir-691|mmu-mir-691	microRNA 691	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-51719615-4	chr3	51719512	51719712	+	863.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 2 of 4)	intron (NM_001004176, intron 2 of 4)	58433.0	NM_001310482	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135395501-2	chr5	135395401	135395601	+	647.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_148932)	promoter-TSS (NM_148932)	-955.0	NM_148932	107939.0	Mm.28399	NM_148932	ENSMUSG00000053293	Pom121	2610027A18Rik|C80273|mKIAA0618	nuclear pore membrane protein 121	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-148409368-4	chr2	148409295	148409495	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1207.0	NM_009378	21824.0	Mm.24096	NM_009378	ENSMUSG00000074743	Thbd	AI385582|CD141|TM	thrombomodulin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-64924749-2	chr1	64924649	64924849	+	689.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039493, intron 2 of 7)	intron (NM_001039493, intron 2 of 7)	32075.0	NM_001039493	241075.0	Mm.239534	NM_175509	ENSMUSG00000051344	Plekhm3	9430067K14Rik|A230102O09Rik|AI449570|DAPR|Plekhm1l	pleckstrin homology domain containing, family M, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-110710761-4	chr7	110710648	110710848	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-57458.0	NM_001276301	11717.0	Mm.3238	NM_009667	ENSMUSG00000005686	Ampd3	-	adenosine monophosphate deaminase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-125950451-4	chr8	125950358	125950558	+	848.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40008.0	NM_145608	234878.0	Mm.216458	NM_145608	ENSMUSG00000031853	Map3k21	Mlk4|mKIAA1804	mitogen-activated protein kinase kinase kinase 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-146457937-2	chr4	146457837	146458037	+	906.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085522, intron 1 of 3)	G-rich|Low_complexity|Low_complexity	8907.0	NM_001085522	433791.0	Mm.276881	NM_001085522	ENSMUSG00000070605	Zfp992	Gm13251	zinc finger protein 992	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-33553695-2	chr17	33553595	33553795	+	686.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_172619)	TTS (NM_172619)	-2012.0	NM_053214	17916.0	Mm.42019	NM_053214	ENSMUSG00000024300	Myo1f	C330006B10Rik	myosin IF	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135967644-2	chr4	135967544	135967744	+	951.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_011942)	TTS (NM_011942)	3919.0	NM_001356493	74246.0	Mm.247946	NM_178389	ENSMUSG00000028671	Gale	2310002A12Rik|AI323962	galactose-4-epimerase, UDP	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-84727369-4	chr2	84727275	84727475	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133840)	promoter-TSS (NM_133840)	-107.0	NM_133840	98985.0	Mm.21583	NM_133840	ENSMUSG00000027079	Clp1	AI462438|Heab	CLP1, cleavage and polyadenylation factor I subunit	protein-coding	6.40732221313918	6.8220337453941	7.03707441268601	7.05004933008971	6.18256194853175	6.05877640270175	6.40550723362076	6.86882224799408	-0.461562798435421	0.0420164433811145	0.293544228078384
Merged-chr12-56525557-3	chr12	56525456	56525656	+	795.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045082, intron 1 of 6)	intron (NR_045082, intron 1 of 6)	3864.0	NR_045082	104798.0	Mm.310950	NR_045082	ENSMUSG00000112343	Sfta3-ps	AI413669|E030019B13Rik|Nanci	surfactant associated 3, pseudogene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-99829214-4	chr4	99829144	99829344	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145549)	promoter-TSS (NM_145549)	-126.0	NM_026348	67733.0	Mm.257094	NM_026348	ENSMUSG00000028549	Itgb3bp	4930471O16Rik|AU022583	integrin beta 3 binding protein (beta3-endonexin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-149958831-1	chr4	149958731	149958931	+	560.0	f0_balb.idr	Intergenic	Intergenic	-3825.0	NM_029035	74646.0	Mm.30	NM_029035	ENSMUSG00000039911	Spsb1	1110014L01Rik|4930422J18Rik|AI596360|AI854583|SSB-1|SSB1	splA/ryanodine receptor domain and SOCS box containing 1	protein-coding	-0.200287458790443	-0.334862779626276	-0.339493615284332	-0.343071893130919	-0.348136928001074	-0.333819995633685	0.00534058500992926	0.485157743474475	2.90681078155778	0.233420295211762	1
Merged-chr13-37721612-3	chr13	37721503	37721703	+	721.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-104435.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-65001314-3	chr18	65001223	65001423	+	668.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114386, intron 2 of 30)	intron (NM_001114386, intron 2 of 30)	-22204.0	NM_031881	83814.0	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122667134-2	chr8	122667025	122667225	+	670.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009824, intron 1 of 11)	intron (NM_009824, intron 1 of 11)	11050.0	NM_001109873	12398.0	Mm.194339	NM_009824	ENSMUSG00000006362	Cbfa2t3	A630044F12Rik|AI465270|AW229127|Cbfa2t3h|ETO-2|Eto2|MTGR2	core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35993849-4	chr17	35993751	35993951	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015618)	promoter-TSS (NR_015618)	-653.0	NR_015618	77810.0	Mm.483143	NR_015618		A930015D03Rik	-	RIKEN cDNA A930015D03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-25567987-2	chr17	25567887	25568087	+	894.333374	f1_balb.idr|f1_c57bl6.idr	exon (NM_011447, exon 3 of 3)	exon (NM_011447, exon 3 of 3)	2699.0	NM_011447	20681.0	Mm.258220	NM_011447	ENSMUSG00000024176	Sox8	-	SRY (sex determining region Y)-box 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-125630523-3	chr7	125630420	125630620	+	825.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021887, intron 7 of 8)	intron (NM_021887, intron 7 of 8)	27091.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-11397088-2	chr15	11396988	11397188	+	544.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_033074, intron 2 of 18)	intron (NM_033074, intron 2 of 18)	2570.0	NM_033074	110960.0	Mm.286061	NM_033074	ENSMUSG00000022241	Tars	D15Wsu59e|ThrRS	threonyl-tRNA synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117792796-4	chr10	117792683	117792883	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134010)	promoter-TSS (NM_134010)	-78.0	NM_134010	103468.0	Mm.12568	NM_134010	ENSMUSG00000052798	Nup107	AW541137|C76801	nucleoporin 107	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-73310943-2	chr13	73310843	73311043	+	664.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17539.0	NR_033306	407785.0	Mm.29897	NM_010888	ENSMUSG00000021606	Ndufs6	BC059730|IP13	NADH dehydrogenase (ubiquinone) Fe-S protein 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-8852704-2	chr4	8852604	8852804	+	717.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001277149, exon 26 of 38)	exon (NM_001277149, exon 26 of 38)	101380.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59480823-3	chr15	59480733	59480933	+	816.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026746, intron 4 of 6)	intron (NM_026746, intron 4 of 6)	106635.0	NM_001164604	68501.0	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-22695219-6	chr11	22695020	22695220	+	869.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	164615.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-27995771-2	chr3	27995671	27995871	+	887.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008875, intron 1 of 25)	Lx4B|LINE|L1	11600.0	NM_008875	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-66860201-4	chr8	66860115	66860315	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163564)	promoter-TSS (NM_001163564)	-2.0	NM_001163564	234344.0	Mm.334561	NM_001163564	ENSMUSG00000014907	Naf1	Gm174	nuclear assembly factor 1 ribonucleoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-28743734-1	chr12	28743634	28743834	+	792.0	f0_c57.idr	intron (NM_001161410, intron 2 of 11)	L1MA9|LINE|L1	6660.0	NM_001161410	217449.0	Mm.132006	NM_178811	ENSMUSG00000020628	Trappc12	CGI-87|D930014A20Rik|Ttc15	trafficking protein particle complex 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127640660-2	chr10	127640635	127640835	+	990.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2251.0	NM_009284	20852.0	Mm.121721	NM_009284	ENSMUSG00000002147	Stat6	-	signal transducer and activator of transcription 6	protein-coding	-1.84371485578039	-1.81332821174849	-1.82251738371298	-1.83006564316449	-1.84158176955426	-1.81133687985023	-1.5312619047181	-1.82871450833159	1.60090129203521	0.64914985597185	1
Merged-chr5-135689023-4	chr5	135688919	135689119	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008898)	promoter-TSS (NM_008898)	-126.0	NM_008898	18984.0	Mm.3863	NM_008898	ENSMUSG00000005514	Por	4933424M13Rik|CPR|CYPOR|P450R	P450 (cytochrome) oxidoreductase	protein-coding	6.75204647531132	6.22740527045958	7.11200999526621	6.6550348113503	7.12614120830875	6.40283794350065	6.59601319126694	6.5526807535341	-0.0206363392963814	0.927411736698362	0.998431161219273
Merged-chr9-32040223-4	chr9	32040102	32040302	+	948.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	-75934.0	NM_001195632	330914.0	Mm.46683	NM_177379	ENSMUSG00000041444	Arhgap32	3426406O18Rik|Gc-gap|Grit|Px-rics|Rics|mKIAA0712|p200Rhogap|p250Gap	Rho GTPase activating protein 32	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102720959-3	chr12	102720839	102721039	+	950.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16070.0	NM_172584	217837.0	Mm.482192	NM_172584	ENSMUSG00000057963	Itpk1	BC031182	inositol 1,3,4-triphosphate 5/6 kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139294318-4	chr5	139294212	139294412	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172723, intron 3 of 10)	intron (NM_172723, intron 3 of 10)	31152.0	NM_172723	231821.0	Mm.297819	NM_172723	ENSMUSG00000056413	Adap1	4930431P11Rik|Centa1|GC1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128570025-2	chr10	128569925	128570125	+	954.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010153, intron 27 of 27)	intron (NM_010153, intron 27 of 27)	-4091.0	NM_011119	18813.0	Mm.4742	NM_011119	ENSMUSG00000025364	Pa2g4	38kDa|AA672939|Ebp1|Plfap	proliferation-associated 2G4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-54119469-4	chr10	54119348	54119548	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43526.0	NR_038016	100502920.0	Mm.403982	NR_038016	ENSMUSG00000097069	Gm16998	-	predicted gene, 16998	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56609846-4	chr17	56609771	56609971	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153152)	promoter-TSS (NM_153152)	-100.0	NM_153152	224904.0	Mm.34002	NM_153152	ENSMUSG00000049760	2410015M20Rik	Mic13|QIL1|sr104	RIKEN cDNA 2410015M20 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-56042353-4	chr14	56042279	56042479	+	890.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008571, intron 1 of 4)	intron (NM_008571, intron 1 of 4)	256.0	NM_008571	17225.0	Mm.4409	NM_008571	ENSMUSG00000022226	Mcpt2	MMCP-2|Mcp-2	mast cell protease 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-52992851-1	chr2	52992751	52992951	+	557.0	f1_balb.idr	intron (NM_172409, intron 1 of 26)	ID_B1|SINE|B4	134983.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70927631-4	chr14	70927524	70927724	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302094, intron 3 of 7)	intron (NM_001302094, intron 3 of 7)	37517.0	NM_001302094	14586.0	Mm.32619	NM_008115	ENSMUSG00000022103	Gfra2	-	glial cell line derived neurotrophic factor family receptor alpha 2	protein-coding	3.42621951850198	3.75944216946875	2.4303880438795	3.99210793059022	2.40276353289178	3.5505272120964	3.43410470413904	3.40962530196327	-0.40409018655433	0.520961529318152	0.947836760490745
Merged-chr15-63595766-4	chr15	63595594	63595794	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-116086.0	NR_045279	432958.0	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	4.61894548141923	5.10103624946253	5.06381237855157	5.17893801124577	5.75754522303129	5.79725114388795	6.60287132174355	5.23428756625357	1.0626909604064	0.0011406034077305	0.0214947010774092
Merged-chr6-29513468-4	chr6	29513361	29513561	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5509.0	NM_001029985	333088.0	Mm.332961	NM_001029985	ENSMUSG00000059022	Kcp	AW060220|CRIM-2|Crim2|Gm793|KCP-1	kielin/chordin-like protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32083769-4	chr2	32083665	32083865	+	966.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175511)	promoter-TSS (NM_175511)	-60.0	NM_175511	241303.0	Mm.250441	NM_175511	ENSMUSG00000050592	Fam78a	A130092J06Rik	family with sequence similarity 78, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-110813683-2	chr12	110813583	110813783	+	555.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_011973, exon 7 of 12)	exon (NM_011973, exon 7 of 12)	27256.0	NM_011973	26448.0	Mm.140948	NM_011973	ENSMUSG00000056458	Mok	RAGE1|Rage|Stk30	MOK protein kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-88306690-2	chr8	88306590	88306790	+	740.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_007406, exon 4 of 28)	exon (NM_007406, exon 4 of 28)	12486.0	NM_001037724	11513.0	Mm.288206	NM_007406	ENSMUSG00000031659	Adcy7	AA407758	adenylate cyclase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-79054172-1	chr6	79054072	79054272	+	576.0	f1_balb.idr	Intergenic	Lx2|LINE|L1	22130.0	NR_040301	100504701.0	Mm.400420	NR_040301	ENSMUSG00000108072	Gm20362	-	predicted gene, 20362	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-116756564-4	chr6	116756459	116756659	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39801.0	NM_178768	319776.0	Mm.133120	NM_178768	ENSMUSG00000048108	Tmem72	C230095G01Rik	transmembrane protein 72	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-129350151-4	chr6	129350049	129350249	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177686)	promoter-TSS (NM_177686)	-95.0	NM_177686	232413.0	Mm.90241	NM_177686	ENSMUSG00000053063	Clec12a	CLL-1|D230024O04|KLRL1|Micl	C-type lectin domain family 12, member a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99937881-2	chr15	99937781	99937981	+	597.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20C1_MM|LTR|ERVK	-6223.0	NM_028180	72277.0	Mm.272766	NM_028180	ENSMUSG00000045350	1700030F18Rik	FAM186A	RIKEN cDNA 1700030F18 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-60728484-2	chr10	60728384	60728584	+	861.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023596, intron 3 of 5)	intron (NM_023596, intron 3 of 5)	24298.0	NM_023596	71279.0	Mm.284462	NM_023596	ENSMUSG00000020100	Slc29a3	4933435C21Rik|AW987637|Ent3	solute carrier family 29 (nucleoside transporters), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-87400085-3	chr6	87399976	87400176	+	656.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11141.0	NM_026860	68888.0	Mm.46387	NM_026860	ENSMUSG00000030048	Gkn3	1190003M12Rik	gastrokine 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132796363-4	chr4	132796281	132796481	+	973.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033308)	promoter-TSS (NM_001033308)	-17.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-118455187-4	chr6	118455081	118455281	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361901, intron 1 of 5)	CpG	325.0	NM_028335	72720.0	Mm.212572	NM_028335	ENSMUSG00000030145	Zfp248	2810037F07Rik|E130106N01Rik	zinc finger protein 248	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-149960356-2	chr1	149960256	149960456	+	904.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008869, intron 1 of 17)	B1_Mus2|SINE|Alu	934.0	NM_008869	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-62672436-1	chr5	62672336	62672536	+	637.5	f0_balb.idr	intron (NM_178407, intron 15 of 32)	intron (NM_178407, intron 15 of 32)	93741.0	NM_178407	212285.0	Mm.244403	NM_178407	ENSMUSG00000037999	Arap2	Centd1|Gm148|mKIAA0580	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-75394449-3	chr4	75394347	75394547	+	869.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-116155.0	NM_025849	66928.0	Mm.24332	NM_025849	ENSMUSG00000028398	Dmac1	1700027K24Rik|3110001D03Rik|Tmem261	distal membrane arm assembly complex 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-124346449-2	chr8	124346350	124346550	+	622.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_139272)	TTS (NM_139272)	87486.0	NM_171824	209966.0	Mm.234233	NM_171824	ENSMUSG00000050751	Pgbd5	2900019M05Rik|AI854313	piggyBac transposable element derived 5	protein-coding	1.86770732144012	1.82109975720044	2.34212055169386	1.13375308115177	2.24956295509074	1.83467159793531	2.36150136006021	1.13734310437586	0.311605844541596	0.779470584924746	0.998431161219273
Merged-chr13-60601884-4	chr13	60601785	60601985	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285917)	promoter-TSS (NM_001285917)	-62.0	NM_001285917	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81288790-3	chr10	81288683	81288883	+	735.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001282095, intron 1 of 20)	intron (NM_001282095, intron 1 of 20)	2484.0	NM_013769	27375.0	Mm.27984	NM_013769	ENSMUSG00000034917	Tjp3	-	tight junction protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-173441376-3	chr1	173441271	173441471	+	695.527771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013779, intron 2 of 8)	intron (NM_001013779, intron 2 of 8)	20767.0	NM_001013779	383619.0	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	2.00554673252037	1.54471324831615	2.84796771186231	1.45601981852101	1.16340485828328	2.41232122572709	2.71741177398753	2.45701672038398	0.457864863303781	0.655892921501456	0.988505467120973
Merged-chr2-154943271-2	chr2	154943176	154943376	+	697.049988	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-50370.0	NM_026030	67204.0	Mm.377134	NM_026030	ENSMUSG00000074656	Eif2s2	2810026E11Rik|38kDa|AA408636|AA571381|AA986487|AW822225|D2Ertd303e|EIF2|EIF2B	eukaryotic translation initiation factor 2, subunit 2 (beta)	protein-coding	3.46389450518101	2.40928531497779	3.42703144770402	3.64964298528716	4.51398901355831	3.83207633905356	3.62872899736884	3.98019407026876	1.04362601421056	0.0527963407237428	0.336345396108035
Merged-chr2-155397841-3	chr2	155397754	155397954	+	859.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019825, intron 12 of 13)	B3|SINE|B2	15998.0	NM_178111	68728.0	Mm.293605	NM_178111	ENSMUSG00000038375	Trp53inp2	1110029F20Rik|Tp53inp2	transformation related protein 53 inducible nuclear protein 2	protein-coding	2.86595082476962	1.06663026921802	1.72222133507857	1.00829276254	2.93758323656047	1.60730878881638	1.90033835955273	1.27866870778281	0.38796692535607	0.741378087797743	0.998431161219273
Merged-chr10-108332203-2	chr10	108332103	108332303	+	595.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_054056)	promoter-TSS (NM_054056)	14.0	NM_054056	114774.0	Mm.391419	NM_054056	ENSMUSG00000035873	Pawr	2310001G03Rik|PAR4|Par-4	PRKC, apoptosis, WT1, regulator	protein-coding	-0.112007252094292	-0.0907886434276262	1.0050934269366	-0.103019193999274	0.327945139687701	0.135816073488594	-0.0961421452681564	-0.102080629257807	-1.34286253822019	0.545759937329739	1
Merged-chr18-82976848-4	chr18	82976766	82976966	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183033, intron 2 of 5)	intron (NM_183033, intron 2 of 5)	-56306.0	NR_033307	75853.0	Mm.420737	NR_033307		4930592I03Rik	-	RIKEN cDNA 4930592I03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5844480-2	chr19	5844380	5844580	+	1000.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_003513, exon 1 of 1)	non-coding (NR_003513, exon 1 of 1)	998.0	NR_131212	66961.0	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-90176481-2	chr16	90176381	90176581	+	572.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34244.0	NR_033476	100038709.0	Mm.484070	NR_033476		Gm10789	-	predicted gene 10789	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-140722918-1	chr6	140722818	140723018	+	769.0	f0_balb.idr	Intergenic	Intergenic	96033.0	NM_001309436	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-43775654-2	chr11	43775554	43775754	+	661.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001284381, exon 5 of 5)	3' UTR (NM_001284381, exon 5 of 5)	-27681.0	NM_133795	66827.0	Mm.271974	NM_133795	ENSMUSG00000041278	Ttc1	4833412C19Rik|C79328|TPR1	tetratricopeptide repeat domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-9380866-4	chr18	9380745	9380945	+	987.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026484, intron 2 of 9)	intron (NM_026484, intron 2 of 9)	69309.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141670471-4	chr4	141670367	141670567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6352.0	NM_001033150	69582.0	Mm.33220	NM_001033150	ENSMUSG00000028917	Plekhm2	2310034J19Rik|AI854247|mKIAA0842	pleckstrin homology domain containing, family M (with RUN domain) member 2	protein-coding	4.55438692943486	3.85017736782526	3.80229766639702	4.17706626112042	4.25827857949486	4.52635760809999	5.53851536968194	4.67986466079958	0.884899394924916	0.0399714077171041	0.284818772426083
Merged-chr19-11818437-4	chr19	11818316	11818516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011502, intron 1 of 10)	intron (NM_011502, intron 1 of 10)	987.0	NM_001286543	20908.0	Mm.272264	NM_011502	ENSMUSG00000041488	Stx3	Syn-3	syntaxin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-108656828-2	chr6	108656728	108656928	+	956.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_104577, intron 1 of 6)	intron (NR_104577, intron 1 of 6)	-3801.0	NM_011498	20893.0	Mm.2436	NM_011498	ENSMUSG00000030103	Bhlhe40	Bhlhb2|C130042M06Rik|CR8|Clast5|Dec1|Sharp2|Stra13|Stra14	basic helix-loop-helix family, member e40	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-137876981-2	chr5	137876881	137877081	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5223.0	NM_001024932	545812.0	Mm.332769	NM_001024932	ENSMUSG00000066682	Pilrb2	EG545812	paired immunoglobin-like type 2 receptor beta 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-39969225-4	chr1	39969130	39969330	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252202, intron 3 of 29)	intron (NM_001252202, intron 3 of 29)	68317.0	NM_008696	26921.0	Mm.491139	NM_008696	ENSMUSG00000026074	Map4k4	9430080K19Rik|AU043147|AU045934|AW046177|HGK|Nik	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-127763274-4	chr3	127763183	127763383	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027808, intron 1 of 13)	intron (NM_027808, intron 1 of 13)	17244.0	NM_027808	71481.0	Mm.158704	NM_027808	ENSMUSG00000028028	Alpk1	8430410J10Rik|LAK	alpha-kinase 1	protein-coding	4.5205926033897	5.16265941593699	4.64990019348493	5.22590209736023	4.47504372290139	4.32138916145983	4.48283720866883	4.23999392622419	-0.665343914262997	0.0685271409148286	0.392669406941315
Merged-chr4-154968204-5	chr4	154968140	154968340	+	855.93335	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172990, intron 1 of 18)	PB1D10|SINE|Alu	4117.0	NR_131230	269614.0	Mm.30042	NM_172990	ENSMUSG00000029056	Pank4	D030031I12Rik|R75150	pantothenate kinase 4	protein-coding	3.85598187173543	3.7060437216692	3.28904327420046	2.04494841781118	3.61893182641597	2.21027137194274	3.03061510986138	2.25235630203179	-0.750757762542775	0.306463450616573	0.806865344318695
Merged-chr10-21200959-4	chr10	21200845	21201045	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14001.0	NR_152786	102636600.0	Mm.227606	NR_152786	ENSMUSG00000111005	Gm33619	-	predicted gene, 33619	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-75220301-2	chr1	75220201	75220401	+	604.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001243091, exon 3 of 3)	3' UTR (NM_001243091, exon 3 of 3)	-1007.0	NM_001313724	22145.0	Mm.1155	NM_009447	ENSMUSG00000026202	Tuba4a	M[a]4|Tuba4	tubulin, alpha 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-128630646-1	chr6	128630546	128630746	+	595.333313	f0_balb.idr	Intergenic	Intergenic	-7712.0	NM_010737	17057.0	Mm.16729	NM_010737	ENSMUSG00000030361	Klrb1a	Ly55a|NKR-P1.7|NKR-P1A|NKRP12|Nkrp1-a|Nkrp1a|ly-55A	killer cell lectin-like receptor subfamily B member 1A	protein-coding	-0.237013070743116	-0.465408572141755	-0.309710158568927	-0.0877700984032583	-0.231173514197846	-0.464709212151369	-0.467817078464168	-0.470448654620632	-1.55778525306022	0.530179951440933	1
Merged-chr9-119323749-4	chr9	119323556	119323756	+	892.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-1229.0	NM_133985	108737.0	Mm.293565	NM_133985	ENSMUSG00000036737	Oxsr1	2210022N24Rik|2810422B09Rik|AI462649|AW209236|Osr1|mKIAA1101	oxidative-stress responsive 1	protein-coding	3.09253467994272	3.30993445178298	2.65378329026481	2.7885085066248	2.75777273566605	2.32547204565925	2.06654332514676	2.70263336542957	-0.948233038985689	0.185177925599006	0.660853724068152
Merged-chr6-87040381-2	chr6	87040281	87040481	+	785.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2465.0	NM_013528	14583.0	Mm.19893	NM_013528	ENSMUSG00000029992	Gfpt1	2810423A18Rik|AI324119|AI449986|GFA|GFAT|GFAT1|GFAT1m|Gfpt	glutamine fructose-6-phosphate transaminase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4_GL456216_random-34969-1	chr4_GL456216_random	34869	35069	+	946.0	f0_c57.idr	intron (NM_001033326, intron 6 of 6)	CpG-10796	19088.0	NM_001033326	236082.0	Mm.305345	NM_001033326	ENSMUSG00000063897	Dhrsx	C80877|D4Ertd296e|Dhrsxy|Pscad	dehydrogenase/reductase (SDR family) X chromosome	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-116462001-4	chr12	116461917	116462117	+	839.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_133762, exon 29 of 29)	3' UTR (NM_133762, exon 29 of 29)	-23703.0	NM_011215	19276.0	Mm.206054	NM_011215	ENSMUSG00000056553	Ptprn2	4930425H11Rik|IA2beta|PTP-NP|Phol|mKIAA0387|phogrin	protein tyrosine phosphatase, receptor type, N polypeptide 2	protein-coding	1.1457029271399	3.01644403077923	1.23152731547027	2.15881452096746	1.60375139754559	2.78661929755297	2.77688453091885	2.40631533416311	0.691119377296517	0.50714172190335	0.943006780176123
Merged-chr5-112287325-7	chr5	112287248	112287448	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001326590, intron 1 of 5)	intron (NM_001326590, intron 1 of 5)	10657.0	NM_009419	22022.0	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120035031-4	chr11	120034946	120035146	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198785, intron 1 of 13)	intron (NM_001198785, intron 1 of 13)	6735.0	NM_001198787	11302.0	Mm.6826	NM_007377	ENSMUSG00000025375	Aatk	AATYK|aatyk1|mKIAA0641	apoptosis-associated tyrosine kinase	protein-coding	2.60603219214784	2.52439742008831	4.37959284151249	2.50406793929284	2.38165112627188	1.89321847528453	3.4349334809035	3.40019848802264	-0.587357446835373	0.455340627287441	0.919253057979521
Merged-chr19-60946163-4	chr19	60946075	60946275	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018869, intron 1 of 15)	MLT1A|LTR|ERVL-MaLR	56426.0	NM_018869	14773.0	Mm.279400	NM_018869	ENSMUSG00000003228	Grk5	Gprk5	G protein-coupled receptor kinase 5	protein-coding	5.92110771276025	5.00618401858961	5.58898429759008	5.83670740380732	5.35552826566753	5.32354727441431	4.9293217494889	4.78847612026811	-0.596112551327287	0.0522924463231979	0.334910861389138
Merged-chr6-34863084-4	chr6	34862996	34863196	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_197986)	promoter-TSS (NM_197986)	-50.0	NM_197986	68487.0	Mm.248440	NM_197986	ENSMUSG00000057137	Tmem140	1110007F12Rik	transmembrane protein 140	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-59543501-4	chr11	59543432	59543632	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153314, intron 2 of 9)	L1MB2|LINE|L1	846.0	NR_153314	216799.0	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-88822144-2	chr15	88822044	88822244	+	910.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029720, intron 5 of 9)	intron (NM_029720, intron 5 of 9)	2498.0	NM_029720	76737.0	Mm.292567	NM_029720	ENSMUSG00000023272	Creld2	5730592L21Rik|C85758	cysteine-rich with EGF-like domains 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-52392517-2	chr12	52392417	52392617	+	854.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	88092.0	NR_136881	102638611.0	Mm.363799	NR_136881	ENSMUSG00000111982	Gm35135	-	predicted gene, 35135	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-95155787-2	chr10	95155687	95155887	+	815.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9962.0	NR_131146	628062.0		NR_131146	ENSMUSG00000112481	Gm29684	-	predicted gene, 29684	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-18772570-4	chr2	18772485	18772685	+	883.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11723.0	NR_126079	100041479.0	Mm.393659	NR_126079	ENSMUSG00000092353	Gm3363	-	predicted gene 3363	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-142166129-4	chr4	142166083	142166283	+	864.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109684, intron 1 of 6)	intron (NM_001109684, intron 1 of 6)	44025.0	NM_144531	71529.0	Mm.255986	NM_144531	ENSMUSG00000040606	Kazn	2310007B04Rik|9030409G11Rik|AI256607|AI666764|AW061099|Kaz|Kazrin	kazrin, periplakin interacting protein	protein-coding	-1.09767014501538	-1.0756624850493	-0.512591899128158	-1.09427141482573	-0.9475180626469	-1.07317923123506	-1.08452756396257	-1.09391344974982	-1.77250465997347	0.581527481992691	1
Merged-chr10-60742223-2	chr10	60742123	60742323	+	588.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023596, intron 2 of 5)	intron (NM_023596, intron 2 of 5)	10559.0	NM_023596	71279.0	Mm.284462	NM_023596	ENSMUSG00000020100	Slc29a3	4933435C21Rik|AW987637|Ent3	solute carrier family 29 (nucleoside transporters), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-21054735-4	chr5	21054641	21054841	+	990.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011203, intron 1 of 17)	intron (NM_011203, intron 1 of 17)	1170.0	NM_001356591	19248.0	Mm.319117	NM_011203	ENSMUSG00000028771	Ptpn12	P19-PTP|PTP-P19|PTP-PEST|PTPG1	protein tyrosine phosphatase, non-receptor type 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33418076-3	chr16	33417969	33418169	+	971.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358569, intron 1 of 8)	MTE2b|LTR|ERVL-MaLR	17624.0	NM_001358569	22661.0	Mm.392667	NM_011749	ENSMUSG00000022811	Zfp148	2210405J08Rik|AI480666|AW045217|BERF-1|BFCOL1|ZBP-89|Znf148	zinc finger protein 148	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-38239311-2	chr16	38239211	38239411	+	635.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347232, intron 11 of 11)	intron (NM_001347232, intron 11 of 11)	55513.0	NM_010936	18171.0	Mm.8509	NM_010936	ENSMUSG00000022809	Nr1i2	PXR|PXR.1|PXR.2|PXR1|SXR|mPXR	nuclear receptor subfamily 1, group I, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-57191025-4	chr2	57190922	57191122	+	938.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	9191.0	NR_040633	75279.0	Mm.401987	NR_040633	ENSMUSG00000086396	4930555B11Rik	-	RIKEN cDNA 4930555B11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-78182343-4	chr16	78182227	78182427	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	73127.0	NR_045698	100503619.0	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-55496559-2	chr12	55496459	55496659	+	720.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3912.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-21395368-3	chr5	21395265	21395465	+	888.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029195, intron 2 of 18)	intron (NM_029195, intron 2 of 18)	22692.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-64318126-3	chr1	64318023	64318223	+	896.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-196734.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-13008900-4	chr17	13008801	13009001	+	943.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013671, intron 2 of 4)	intron (NM_013671, intron 2 of 4)	1062.0	NM_013671	20656.0	Mm.290876	NM_013671	ENSMUSG00000006818	Sod2	MnSOD|Sod-2	superoxide dismutase 2, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-48775617-4	chr7	48775481	48775681	+	812.233337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13422.0	NM_028031	243983.0	Mm.279116	NM_028031	ENSMUSG00000030471	Zdhhc13	2410004E01Rik|C530010M18|HIP3RP|Hip14l|kojak|skc4	zinc finger, DHHC domain containing 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-37248768-3	chr12	37248652	37248852	+	907.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178767, intron 2 of 12)	intron (NM_178767, intron 2 of 12)	7113.0	NM_178767	319660.0	Mm.485540	NM_178767	ENSMUSG00000050103	Agmo	A530016O06Rik|AI790538|Tmem195	alkylglycerol monooxygenase	protein-coding	2.48495242337654	2.27445431035703	1.62604843623577	3.25231796309748	4.28772452899178	4.45472984059649	4.16720780388825	4.68875831312166	2.80046766881105	1.92736705177877e-06	0.000112255096540008
Merged-chr12-4546526-2	chr12	4546426	4546626	+	731.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	BC1_Mm|scRNA|scRNA	22413.0	NR_136891	102634330.0	Mm.402324	NR_136891	ENSMUSG00000112422	Gm31938	-	predicted gene, 31938	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107296645-4	chr9	107296541	107296741	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009895)	promoter-TSS (NM_009895)	-18.0	NM_009895	12700.0	Mm.4592	NM_009895	ENSMUSG00000032578	Cish	CIS-1|CIS1|Cis|F17|F23|SOCS	cytokine inducible SH2-containing protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117254996-2	chr8	117254896	117255096	+	866.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-2023.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-137856600-3	chr5	137856516	137856716	+	752.133362	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133209, intron 2 of 4)	intron (NM_133209, intron 2 of 4)	1433.0	NM_133209	170741.0	Mm.347593	NM_133209	ENSMUSG00000066684	Pilrb1	FDFACT|Fdact|Pilrb	paired immunoglobin-like type 2 receptor beta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-193170077-4	chr1	193169977	193170177	+	986.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_016851, exon 8 of 8)	3' UTR (NM_016851, exon 8 of 8)	-3392.0	NM_001160360	319266.0	Mm.482460	NM_181048	ENSMUSG00000079144	A130010J15Rik	-	RIKEN cDNA A130010J15 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-125123020-4	chr4	125122918	125123118	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153159, intron 2 of 5)	intron (NM_153159, intron 2 of 5)	4863.0	NM_153159	230738.0	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-14067613-3	chr9	14067483	14067683	+	692.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TC)n|Simple_repeat|Simple_repeat	-208718.0	NM_030261	75747.0	Mm.325126	NM_030261	ENSMUSG00000032009	Sesn3	5630400E15Rik|BC003348|SEST3	sestrin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-121714934-2	chr5	121714834	121715034	+	777.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_009125, intron 1 of 24)	B2_Mm1a|SINE|B2	3325.0	NM_009125	20239.0	Mm.260900	NM_009125	ENSMUSG00000042605	Atxn2	9630045M23Rik|ATX2|AW544490|Sca2	ataxin 2	protein-coding	-1.84371485578039	-1.81332821174849	-1.82251738371298	-1.83006564316449	-1.84158176955426	-1.81133687985023	-1.5312619047181	-1.82871450833159	1.60090129203521	0.64914985597185	1
Merged-chr14-61172887-4	chr14	61172806	61173006	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172809, intron 2 of 9)	CpG	34449.0	NM_015788	50720.0	Mm.440703	NM_015788	ENSMUSG00000048279	Sacs	A230052M14|DNAJC29|E130115J16Rik	sacsin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-56311238-4	chr8	56311028	56311228	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008278, intron 4 of 6)	intron (NM_008278, intron 4 of 6)	16576.0	NM_008278	15446.0	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	-0.360594343347948	-0.346643906042245	0.4303366187396	-0.354732807678103	-0.208165363675936	0.0263463515949902	-0.350200338935573	-0.354116639389157	-0.970631260821481	0.694846879723676	1
Merged-chr4-130783779-2	chr4	130783679	130783879	+	559.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8758.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-27613022-2	chr3	27612922	27613122	+	553.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356953, intron 4 of 26)	B3|SINE|B2	-28027.0	NR_037275	100526525.0		NR_037275	ENSMUSG00000092695	Mir3092	mir-3092|mmu-mir-3092	microRNA 3092	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-143207266-2	chr7	143207166	143207366	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008434, intron 10 of 15)	L1ME1|LINE|L1	89281.0	NR_001461	63830.0	Mm.356096	NR_001461	ENSMUSG00000101609	Kcnq1ot1	Kvlqt1-as|Lit1|Tssc8	KCNQ1 overlapping transcript 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-65720134-3	chr11	65720028	65720228	+	738.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316368, intron 3 of 10)	intron (NM_001316368, intron 3 of 10)	14704.0	NR_030417	791070.0		NR_030417	ENSMUSG00000076460	Mir744	Mirn744|mir-744|mmu-mir-744	microRNA 744	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-112254742-4	chr5	112254656	112254856	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1064.0	NM_001312895	12960.0	Mm.29488	NM_023695	ENSMUSG00000029343	Crybb1	3110006K12Rik|BB1CRY	crystallin, beta B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-44387339-4	chr18	44387311	44387511	+	909.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027490, intron 1 of 10)	intron (NM_027490, intron 1 of 10)	6911.0	NM_027490	70640.0	Mm.87629	NM_027490	ENSMUSG00000024472	Dcp2	2410015D23Rik|5730537H01Rik|AL118268	decapping mRNA 2	protein-coding	0.511835179529215	0.55911668703072	0.970873916353511	0.532186555182444	1.02566591326036	0.562451400392962	1.95126503028261	1.55537525534367	3.36886424813111	0.0436646811677359	0.299897798204154
Merged-chr1-51789495-4	chr1	51789390	51789590	+	770.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010863, intron 13 of 29)	intron (NM_010863, intron 13 of 29)	126488.0	NM_001161817	17912.0	Mm.3390	NM_010863	ENSMUSG00000018417	Myo1b	AA406997|MIH-L|MMIa	myosin IB	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-156196777-1	chr4	156196677	156196877	+	704.0	f0_balb.idr	intron (NM_021604, intron 1 of 35)	CpG	711.0	NM_021604	11603.0	Mm.273098	NM_021604	ENSMUSG00000041936	Agrn	Agrin|nmf380	agrin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115141060-2	chr11	115140932	115141132	+	666.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163753, intron 1 of 8)	ORR1A1|LTR|ERVL-MaLR	-7040.0	NM_145634	246746.0	Mm.277387	NM_145634	ENSMUSG00000047798	Cd300lf	CLIM1|CLM-1|CLM1|Digr2|F730004D16Rik|IREM1|IgSF13|LMIR3|Pigr3	CD300 molecule like family member F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-119435039-2	chr8	119434939	119435139	+	994.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2123.0	NM_027950	71839.0	Mm.272357	NM_027950	ENSMUSG00000074063	Osgin1	1700012B18Rik|Okl38	oxidative stress induced growth inhibitor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81097667-2	chr15	81097609	81097809	+	689.75	f0_balb.idr|f1_balb.idr	intron (NM_001082536, intron 2 of 13)	intron (NM_001082536, intron 2 of 13)	7338.0	NM_153049	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	0.717906397506477	1.12218559745066	0.579344307803717	0.571484414578062	1.18547544699091	0.591700054280361	1.20839643770833	1.35871169810922	1.76969003593119	0.268466675826409	0.771820249975699
Merged-chr15-88870566-2	chr15	88870466	88870666	+	759.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8372.0	NM_145478	223775.0	Mm.400129	NM_145478	ENSMUSG00000035828	Pim3	BC026639|Kid1	proviral integration site 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-108587338-1	chr5	108587238	108587438	+	612.0	f1_balb.idr	intron (NM_001359923, intron 18 of 22)	intron (NM_001359923, intron 18 of 22)	-37311.0	NM_007756	12889.0	Mm.5195	NM_007756	ENSMUSG00000033615	Cplx1	921-S	complexin 1	protein-coding	-1.18818405238703	-1.1621273909064	-1.17340543805306	-1.18266956177369	-0.508992984534732	-1.15968339104222	-1.17085233538681	-1.18101128805699	2.76775479490304	0.421927342186551	1
Merged-chr17-27553103-3	chr17	27553003	27553203	+	858.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3471.0	NM_001166536	15361.0	Mm.4438	NM_016660	ENSMUSG00000046711	Hmga1	AL023995|Hmga1a|Hmga1b|Hmgi|Hmgiy|Hmgy	high mobility group AT-hook 1	protein-coding	3.06774872465293	1.72331901003483	2.77255455876348	2.77710049640344	1.91882022968101	2.57783438344304	2.07605625617635	2.01344801157719	-1.12303044147368	0.182519610685141	0.656567146412251
Merged-chr11-79963506-4	chr11	79963426	79963626	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1139.0	NM_144826	216987.0	Mm.274961	NM_144826	ENSMUSG00000035575	Utp6	4732497O03Rik|HCA66	UTP6 small subunit processome component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-56774419-4	chr13	56774287	56774487	+	864.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302372, intron 11 of 11)	intron (NM_001302372, intron 11 of 11)	70719.0	NM_001164042	17129.0	Mm.272920	NM_008541	ENSMUSG00000021540	Smad5	1110051M15Rik|AI451355|Dwf-C|Madh5|MusMLP	SMAD family member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140664022-2	chr5	140663922	140664122	+	806.875	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028833, exon 23 of 23)	3' UTR (NM_028833, exon 23 of 23)	-14991.0	NM_175274	78339.0	Mm.28947	NM_175274	ENSMUSG00000036565	Ttyh3	2900029G13Rik|AI414930|TTY3|mTTY3	tweety family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140702292-4	chr5	140702208	140702408	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028833)	promoter-TSS (NM_028833)	70.0	NM_028833	74239.0	Mm.179704	NM_028833	ENSMUSG00000036555	Iqce	1700028P05Rik|mKIAA1023	IQ motif containing E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-66400201-4	chr8	66400095	66400295	+	896.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175188, intron 5 of 7)	Lx8|LINE|L1	13894.0	NM_001166375	72925.0	Mm.380457	NM_175188	ENSMUSG00000036469	March1	2900024D24Rik|BB085186	membrane-associated ring finger (C3HC4) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21424820-4	chr9	21424723	21424923	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253893)	promoter-TSS (NM_001253893)	-85.0	NM_007871	13430.0	Mm.433257	NM_007871	ENSMUSG00000033335	Dnm2	Dyn2|Udnm|b2b2159Clo	dynamin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-99741813-1	chr12	99741713	99741913	+	739.0	f0_c57.idr	intron (NM_030172, intron 5 of 5)	Lx9|LINE|L1	-113839.0	NR_045288	73457.0	Mm.383439	NR_045288	ENSMUSG00000100211	1700064M15Rik	-	RIKEN cDNA 1700064M15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76468536-2	chr15	76468436	76468636	+	654.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_013481, intron 2 of 15)	intron (NM_013481, intron 2 of 15)	8733.0	NM_013481	12181.0	Mm.4283	NM_013481	ENSMUSG00000022557	Bop1	AU020183|AW146150|D18861|Erb1p|Kiaa0124|mKIAA0124	block of proliferation 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-80898663-1	chr13	80898563	80898763	+	678.0	f0_balb.idr	Intergenic	Intergenic	12568.0	NR_153411	105171.0	Mm.423137	NM_001042591	ENSMUSG00000074794	Arrdc3	AI450344|mKIAA1376	arrestin domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-148325609-2	chr5	148325509	148325709	+	897.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	60392.0	NM_001359505	77521.0	Mm.244177	NM_029920	ENSMUSG00000029651	Mtus2	5730592G18Rik|A730013O20Rik|AU067634|C130038G02Rik|Cazip|Gm763|mKIAA0774	microtubule associated tumor suppressor candidate 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-104231044-4	chr12	104230947	104231147	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009251, intron 3 of 6)	intron (NM_009251, intron 3 of 6)	-5100.0	NM_001353612	20715.0	Mm.312628	NM_009251		Serpina3g	2A2|AI119734|Spi2-1|Spi2/eb.1|Spi2A|spi2	serine (or cysteine) peptidase inhibitor, clade A, member 3G	protein-coding	6.63096406617968	6.43629242811593	6.46446903598901	6.7797997342376	6.76990067350112	6.52584196166062	6.74378606521004	6.67719362085188	0.103418770685828	0.581040004028338	0.966599221005409
Merged-chr12-41484917-3	chr12	41484796	41484996	+	760.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271708, intron 1 of 2)	intron (NM_001271708, intron 1 of 2)	1161.0	NM_001271708	16981.0	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-32674431-2	chr9	32674331	32674531	+	689.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21611.0	NM_011808	23871.0	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-22149459-2	chr10	22149373	22149573	+	884.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001254744)	promoter-TSS (NM_001254744)	-203.0	NM_001254745	319887.0	Mm.177746	NM_001254744	ENSMUSG00000097327	E030030I06Rik	-	RIKEN cDNA E030030I06 gene	protein-coding	1.51336225432858	1.14483863252491	0.740722134046706	0.73141285016272	1.44697452199966	0.755311861201512	1.3826643282932	1.33319140773311	0.713479456881172	0.630422208662553	0.981462672084773
Merged-chr19-35126815-4	chr19	35126703	35126903	+	911.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	161407.0	NR_035473	100316775.0		NR_035473	ENSMUSG00000089151	Mir1950	mmu-mir-1950	microRNA 1950	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-59836219-4	chr13	59836130	59836330	+	912.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13083.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	1.83883249711712	2.92554555481612	3.30572997040172	2.11799875386765	2.30499513315173	2.44246190038867	3.11494420353341	2.94047591584806	0.112231176755396	0.88702920068495	0.998431161219273
Merged-chr16-22264825-4	chr16	22264740	22264940	+	878.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001330555, intron 1 of 9)	intron (NM_001330555, intron 1 of 9)	1165.0	NM_001330554	20462.0	Mm.210352	NM_009186	ENSMUSG00000022858	Tra2b	5730405G21Rik|D16Ertd266e|SIG-41|Sfrs10|Silg41|TRA2beta	transformer 2 beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-64108482-1	chr13	64108382	64108582	+	543.0	f0_c57.idr	intron (NM_001001321, intron 6 of 11)	intron (NM_001001321, intron 6 of 11)	-19281.0	NM_008291	15487.0	Mm.5109	NM_008291	ENSMUSG00000033122	Hsd17b3	-	hydroxysteroid (17-beta) dehydrogenase 3	protein-coding	2.23235140953883	2.60797899365349	1.89922674899445	2.36086982191849	1.2930142396059	1.16202210149597	1.76542724429175	1.34927933121695	-2.65631905186621	0.0129436080254406	0.13101581194255
Merged-chr1-180262867-2	chr1	180262767	180262967	+	863.8333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6567.0	NM_001128605	19165.0	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-30933174-4	chr13	30933091	30933291	+	794.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025588, intron 4 of 27)	intron (NM_025588, intron 4 of 27)	14570.0	NM_153072	210554.0	Mm.450571	NM_153072	ENSMUSG00000076430	Hus1b	-	HUS1 checkpoint clamp component B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-69395423-1	chr17	69395323	69395523	+	591.0	f1_c57bl6.idr	Intergenic	Intergenic	11619.0	NM_009547	22666.0	Mm.29434	NM_009547	ENSMUSG00000049672	Zbtb14	ZF5|Zfp161|b2b1982Clo	zinc finger and BTB domain containing 14	protein-coding	-1.22315906685268	-1.19557143632602	-1.20673282037136	-0.55836125556573	-1.22265483704505	-1.19315271784257	-1.20420612767407	-1.21425999345206	-2.67891099987134	0.437057736398543	1
Merged-chr14-14015162-3	chr14	14015063	14015263	+	862.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139227, intron 3 of 11)	intron (NM_139227, intron 3 of 11)	2672.0	NM_139227	246103.0	Mm.133625	NM_139227	ENSMUSG00000021738	Atxn7	A430107N12Rik|AI627028|Sca7|ataxin-7	ataxin 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-111422818-4	chr10	111422733	111422933	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50394.0	NM_001358932	53605.0	Mm.290407	NM_015781	ENSMUSG00000058799	Nap1l1	AA407126|AI256722|D10Ertd68e|NAP-1	nucleosome assembly protein 1-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-149662342-4	chr4	149662256	149662456	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029837, intron 3 of 23)	intron (NM_001029837, intron 3 of 23)	960.0	NM_001164052	18707.0	Mm.229108	NM_008840	ENSMUSG00000039936	Pik3cd	2410099E07Rik|2610208K16Rik|AW545373|p110delta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-111473679-2	chr10	111473579	111473779	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_152558, intron 1 of 14)	CpG	452.0	NR_152558	53605.0	Mm.290407	NM_015781	ENSMUSG00000058799	Nap1l1	AA407126|AI256722|D10Ertd68e|NAP-1	nucleosome assembly protein 1-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-13197461-4	chr16	13197378	13197578	+	821.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59003.0	NM_001122667	239719.0	Mm.270643	NM_153588	ENSMUSG00000009569	Mkl2	Gt4-1|MRTF-B|Mrtfb|mKIAA1243	MKL/myocardin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-119112350-2	chr4	119112252	119112452	+	723.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011400, intron 1 of 9)	intron (NM_011400, intron 1 of 9)	3607.0	NM_011400	20525.0	Mm.21002	NM_011400	ENSMUSG00000028645	Slc2a1	Glut-1|Glut1	solute carrier family 2 (facilitated glucose transporter), member 1	protein-coding	0.619741808532645	0.617468166473615	0.257425684815101	0.880495457621738	0.245337743378965	0.265374667148137	0.835735363377064	0.253293218656212	-1.1583095712728	0.550688184163732	1
Merged-chr8-46923591-4	chr8	46923481	46923681	+	775.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-63306.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-29493428-2	chr19	29493328	29493528	+	628.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28559.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-112343788-4	chr13	112343676	112343876	+	815.908325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168403, intron 6 of 11)	intron (NM_001168403, intron 6 of 11)	55258.0	NM_001168404	77318.0	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	2.17515070684518	1.33373808554652	1.90985852527982	2.14415241739139	2.12236182365644	1.34205672859807	1.0698096851937	1.27150507724306	-1.16271379177947	0.310344645864709	0.811105517227297
Merged-chr6-31660937-3	chr6	31660810	31661010	+	782.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5221.0	NR_152155	434003.0	Mm.332979	NR_152155	ENSMUSG00000084973	Gm13848	-	predicted gene 13848	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-10486943-4	chr16	10486837	10487037	+	983.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001243760, intron 1 of 18)	intron (NM_001243760, intron 1 of 18)	-1241.0	NM_007575	12265.0	Mm.249560	NM_007575	ENSMUSG00000022504	Ciita	C2ta|EG669998|Gm9475|Mhc2ta	class II transactivator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-120150815-2	chr13	120150715	120150915	+	721.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039648, intron 1 of 2)	intron (NM_001039648, intron 1 of 2)	10569.0	NM_001039648	639910.0	Mm.424428	NM_001039648	ENSMUSG00000096323	Gm20767	-	predicted gene, 20767	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-90897618-4	chr5	90897541	90897741	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6258.0	NM_009140	20310.0	Mm.4979	NM_009140	ENSMUSG00000058427	Cxcl2	CINC-2a|GROb|Gro2|MIP-2|MIP-2a|Mgsa-b|Mip2|Scyb|Scyb2	chemokine (C-X-C motif) ligand 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115185132-3	chr11	115185019	115185219	+	989.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025400, intron 2 of 6)	intron (NM_025400, intron 2 of 6)	2197.0	NM_025400	66176.0	Mm.86823	NM_025400	ENSMUSG00000015542	Nat9	1110028N05Rik	N-acetyltransferase 9 (GCN5-related, putative)	protein-coding	3.69109605582904	3.99147399482793	3.985449450301	3.93581753537131	2.74537491762654	2.62447923904857	3.75799257396692	3.64586262964723	-0.911074021319033	0.0944992334422528	0.475588004547042
Merged-chr10-120061496-2	chr10	120061396	120061596	+	720.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358809, intron 22 of 23)	intron (NM_001358809, intron 22 of 23)	51469.0	NM_080446	117599.0	Mm.214703	NM_080446	ENSMUSG00000020228	Helb	AI447783|D10Ertd664e	helicase (DNA) B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-25016246-3	chr8	25016148	25016348	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027194)	promoter-TSS (NM_027194)	674.0	NM_001270996	11502.0	Mm.28908	NM_007404	ENSMUSG00000031555	Adam9	AU020942|MDC9|Mltng|mKIAA0021	a disintegrin and metallopeptidase domain 9 (meltrin gamma)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47909415-4	chr17	47909320	47909520	+	907.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028767, intron 1 of 16)	intron (NM_028767, intron 1 of 16)	15212.0	NM_028767	74123.0	Mm.240062	NM_028767	ENSMUSG00000023991	Foxp4	1200010K03Rik|2310007G05Rik|mFKHLA	forkhead box P4	protein-coding	1.31850066934803	1.01224585483809	1.59651803151898	2.01877701090168	1.32925379448193	1.01723119922766	1.99906559247211	2.48741854370825	0.856605957350316	0.475960641836303	0.927406040011522
Merged-chr5-92137824-4	chr5	92137722	92137922	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019490)	promoter-TSS (NM_019490)	-97.0	NM_001359195	23881.0	Mm.290530	NM_011816	ENSMUSG00000029405	G3bp2	AA409541|E430034L04Rik|G3BP|mKIAA0660	GTPase activating protein (SH3 domain) binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-28483840-2	chr6	28483740	28483940	+	941.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019776, intron 1 of 23)	intron (NM_019776, intron 1 of 23)	3492.0	NM_019776	56463.0	Mm.439987	NM_019776	ENSMUSG00000001424	Snd1	AL033314|Tudor-SN	staphylococcal nuclease and tudor domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-18142626-2	chr15	18142526	18142726	+	557.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045711, intron 9 of 11)	intron (NR_045711, intron 9 of 11)	227001.0	NR_045711	70886.0	Mm.399021	NR_045711	ENSMUSG00000098150	4921515E04Rik	-	RIKEN cDNA 4921515E04 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32591234-3	chr2	32591120	32591320	+	767.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011373, intron 2 of 4)	B2_Mm2|SINE|B2	4142.0	NM_011373	20448.0	Mm.27446	NM_011373	ENSMUSG00000079442	St6galnac4	SIAT7-D|ST6GalNAcIV|Siat7d	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-88107548-4	chr11	88107425	88107625	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198013, intron 1 of 10)	intron (NM_198013, intron 1 of 10)	8379.0	NM_198013	103841.0	Mm.374846	NM_198013	ENSMUSG00000018378	Cuedc1	AI841487|C330016O16Rik	CUE domain containing 1	protein-coding	4.75258348229433	3.45007124821657	4.4438103202104	3.60312077853801	4.44035705731567	4.02547025953867	3.56071241777573	3.62206784359638	-0.29717207687589	0.553496799238745	0.959685872563428
Merged-chr6-136687642-3	chr6	136687537	136687737	+	911.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25744.0	NM_025806	66857.0	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	2.64950915278042	3.04196435310856	2.7746026921725	1.5843200565342	4.60433478782495	4.04830109190008	4.50515498268075	5.07921502876063	2.93667883274518	2.16735389488732e-07	1.73359413539054e-05
Merged-chr16-23226072-3	chr16	23226047	23226247	+	895.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_152126)	promoter-TSS (NR_152126)	126.0	NM_001252505	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-119499078-2	chr14	119498978	119499178	+	733.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_015820, intron 1 of 1)	intron (NM_015820, intron 1 of 1)	-250149.0	NR_045621	75432.0	Mm.443277	NR_045621	ENSMUSG00000100274	1700006F04Rik	-	RIKEN cDNA 1700006F04 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167892119-4	chr2	167892013	167892213	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40214.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-23942391-4	chr18	23942320	23942520	+	877.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12268.0	NM_027007	69256.0	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-127142336-3	chr2	127142216	127142416	+	928.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355634, intron 1 of 2)	intron (NM_001355634, intron 1 of 2)	274.0	NM_001163528	73338.0	Mm.57559	NM_001163527	ENSMUSG00000074825	Itpripl1	1700041B20Rik	inositol 1,4,5-triphosphate receptor interacting protein-like 1	protein-coding	-0.483959802930206	-0.298681026019474	-0.181142029687516	-0.204568614080298	-0.483374799926554	-0.473774725401319	-0.476924377261779	-0.200463344292019	-1.33425335130414	0.592002921518535	1
Merged-chr8-64947326-6	chr8	64947250	64947450	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163747, intron 1 of 4)	CpG	165.0	NM_028427	73067.0	Mm.294445	NM_028427	ENSMUSG00000025521	Tmem192	3110005G23Rik	transmembrane protein 192	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-10972193-1	chr2	10972093	10972293	+	885.0	f0_balb.idr	Intergenic	L1MEi|LINE|L1	-200189.0	NM_008859	18761.0	Mm.329993	NM_008859	ENSMUSG00000026778	Prkcq	A130035A12Rik|AW494342|PKC-0|PKC-theta|PKCtheta|Pkcq	protein kinase C, theta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35050350-4	chr17	35050255	35050455	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_033444, exon 1 of 6)	5' UTR (NM_033444, exon 1 of 6)	112.0	NM_033444	114584.0	Mm.29524	NM_033444	ENSMUSG00000007041	Clic1	Clcp|G6	chloride intracellular channel 1	protein-coding	3.89688695684132	3.70456464002415	3.86576302720548	3.82354706209646	3.82927095862222	2.81760510298014	3.12954219005633	3.4207971252261	-0.687017860219844	0.190645484141763	0.669546561020494
Merged-chr2-180024856-4	chr2	180024850	180025050	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177727)	promoter-TSS (NM_177727)	-37.0	NM_177727	241846.0	Mm.21577	NM_177727	ENSMUSG00000039108	Lsm14b	9430078B04|BC040823	LSM family member 14B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-102626305-4	chr9	102626230	102626430	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181394)	promoter-TSS (NM_181394)	34.0	NM_181394	69010.0	Mm.2000	NM_181394	ENSMUSG00000035048	Anapc13	1810004D07Rik|APC13|SWM1	anaphase promoting complex subunit 13	protein-coding	6.38575229150219	6.10513528900551	6.6792793463233	6.65176427465727	6.94438384806075	6.51321239379866	6.36187691238291	5.95001874532684	0.0172993226561999	0.942172567786279	0.998431161219273
Merged-chr16-38130755-4	chr16	38130644	38130844	+	797.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347232, intron 1 of 11)	intron (NM_001347232, intron 1 of 11)	-41484.0	NR_033221	414072.0	Mm.483602	NR_033221		BC031361	-	cDNA sequence BC031361	ncRNA	2.96012515988333	3.21907273963309	3.11099744417026	3.21088031160346	2.98503224827648	3.43947623010196	3.99298574236598	3.13667499213943	0.52436445747904	0.372326645049058	0.865109408625856
Merged-chr12-80153123-1	chr12	80153023	80153223	+	547.0	f1_balb.idr	Intergenic	Intergenic	-20279.0	NR_033514	69548.0	Mm.269712	NR_033514		2310015A10Rik	5330419I17Rik	RIKEN cDNA 2310015A10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-107989146-4	chr4	107989050	107989250	+	956.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146255, intron 2 of 10)	intron (NM_146255, intron 2 of 10)	20816.0	NM_146255	242607.0	Mm.192040	NM_146255	ENSMUSG00000008932	Slc1a7	A930031E15Rik|Eaat5	solute carrier family 1 (glutamate transporter), member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115496751-3	chr11	115496615	115496815	+	705.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008258)	TTS (NM_008258)	-4901.0	NM_015807	50773.0	Mm.390379	NM_015807	ENSMUSG00000020736	Nt5c	Dnt|Dnt1|Umph-2|Umph2	5',3'-nucleotidase, cytosolic	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-128858435-3	chr4	128858338	128858538	+	853.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25702.0	NM_178110	67525.0	Mm.30653	NM_178110	ENSMUSG00000041000	Trim62	6330414G21Rik|AI450348|Dear1	tripartite motif-containing 62	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6911711-2	chr19	6911611	6911811	+	977.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_026306)	TTS (NM_026306)	-1605.0	NM_001358444	54683.0	Mm.279782	NM_012021	ENSMUSG00000024953	Prdx5	AOEB166|AOPP|PLP|Pmp20|Prdx6|PrxV	peroxiredoxin 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-22131297-4	chr9	22131182	22131382	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007388)	promoter-TSS (NM_007388)	583.0	NM_001102404	11433.0	Mm.46354	NM_007388	ENSMUSG00000001348	Acp5	TRACP|TRAP	acid phosphatase 5, tartrate resistant	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-81843138-4	chr7	81842960	81843160	+	870.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-13629.0	NM_146193	83962.0	Mm.439893	NM_146193	ENSMUSG00000025103	Btbd1	1190005H08Rik	BTB (POZ) domain containing 1	protein-coding	1.74274012388857	1.00280292558449	1.79643792633681	1.62718778272544	2.1956998563796	1.6099110736721	1.21220929479709	0.973356423426972	0.0783163256057696	0.949922522203476	0.998431161219273
Merged-chr4-3729819-3	chr4	3729721	3729921	+	684.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 1 of 12)	intron (NM_001111096, intron 1 of 12)	14857.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	1.06853826824045	0.90119637020413	0.685791620932294	0.677856551593825	1.07817953980913	1.35548925082839	1.40861631923078	1.13882985769814	2.07977745549399	0.154230928082152	0.609540819282158
Merged-chr19-53903246-4	chr19	53903138	53903338	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001168492)	promoter-TSS (NM_001168492)	-113.0	NM_001168492	18569.0	Mm.1605	NM_011050	ENSMUSG00000024975	Pdcd4	D19Ucla1|Ma3|Tis	programmed cell death 4	protein-coding	4.02077319934082	4.05788781739843	4.43028197600889	4.44749646210041	4.05216441736878	4.01449464787576	3.23311103101693	3.34391641324169	-0.742564490701514	0.110199858206204	0.520338668540955
Merged-chr18-4335808-2	chr18	4335708	4335908	+	896.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_007746, intron 5 of 7)	intron (NM_007746, intron 5 of 7)	17145.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124359165-4	chr6	124359064	124359264	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2078.0	NM_001177502	76921.0	Mm.425335	NM_001177502	ENSMUSG00000079346	1700013D24Rik	-	RIKEN cDNA 1700013D24 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-35755540-4	chr5	35755444	35755644	+	975.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2336.0	NM_001177697	231148.0	Mm.254446	NM_177678	ENSMUSG00000029095	Ablim2	AI606905|C230091L11	actin-binding LIM protein 2	protein-coding	3.43398650524745	3.13237386489923	3.29867112034401	3.35699303886798	2.81708737142132	2.27388697869426	3.14957010370891	2.95913035530615	-0.819588812557923	0.188346538517015	0.666715523537816
Merged-chr10-26753325-3	chr10	26753234	26753434	+	900.138855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19178.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-48860602-2	chr6	48860502	48860702	+	638.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001358003, exon 1 of 3)	exon (NM_001358003, exon 1 of 3)	273.0	NM_001358003	666105.0	Mm.379315	NM_001358003		Gm7932	EG666105	predicted gene 7932	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-85488912-4	chr17	85488816	85489016	+	998.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	129480.0	NR_038084	100043902.0	Mm.150838	NR_015385	ENSMUSG00000093460	Six3os1	D17Mgi26|E130112H22Rik|Rncr1|Six3os	SIX homeobox 3, opposite strand 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36692395-1	chr18	36692295	36692495	+	847.0	f1_c57bl6.idr	intron (NM_172831, intron 5 of 12)	intron (NM_172831, intron 5 of 12)	3530.0	NM_172831	240216.0	Mm.252323	NM_172831	ENSMUSG00000044719	E230025N22Rik	EG240216	Riken cDNA E230025N22 gene	protein-coding	-2.05752322593321	-2.15521190974092	-2.16307242109104	-2.16952927915413	-2.17938029103484	-2.15350850414045	-2.16129297361887	-2.16837350464794	-0.683654500252594	0.846597994014493	1
Merged-chr5-105731276-2	chr5	105731176	105731376	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178701, intron 1 of 2)	intron (NM_178701, intron 1 of 2)	30466.0	NM_178701	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	1.37879152292054	0.971915395758462	1.52257056077026	0.915958762032478	0.694802113661744	1.90650194213826	1.12980832909574	0.713275983523901	0.0278399964629228	0.984320063673865	0.998431161219273
Merged-chr7-45706078-4	chr7	45705979	45706179	+	943.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016974, intron 1 of 3)	intron (NM_016974, intron 1 of 3)	832.0	NM_016974	13170.0	Mm.24222	NM_016974	ENSMUSG00000059824	Dbp	-	D site albumin promoter binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-64195469-3	chr1	64195344	64195544	+	869.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74055.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-16960612-3	chr10	16960511	16960711	+	822.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038020, intron 5 of 8)	L1MCa|LINE|L1	135171.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-31571954-1	chr5	31571854	31572054	+	541.0	f1_c57bl6.idr	promoter-TSS (NR_102275)	promoter-TSS (NR_102275)	-557.0	NR_102275	100740.0	Mm.23370	NR_102275		AI839979	-	expressed sequence AI839979	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-155208098-2	chr4	155207998	155208198	+	697.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011385, intron 1 of 6)	intron (NM_011385, intron 1 of 6)	14437.0	NM_011385	20481.0	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-93604724-2	chr16	93604624	93604824	+	682.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145482)	promoter-TSS (NM_145482)	-909.0	NM_145482	224440.0	Mm.10628	NM_145482	ENSMUSG00000022948	Setd4	AY037804|C21orf18|ORF21	SET domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-84822614-2	chr11	84822514	84822714	+	876.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177564, intron 3 of 6)	intron (NM_177564, intron 3 of 6)	-3099.0	NM_145433	217038.0	Mm.280825	NM_145433	ENSMUSG00000018405	Mrm1	A530065E19Rik	mitochondrial rRNA methyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-27536807-4	chr7	27536695	27536895	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001317355, intron 10 of 13)	intron (NM_001317355, intron 10 of 13)	13534.0	NM_001033315	233020.0	Mm.429716	NM_001033315	ENSMUSG00000040424	Hipk4	Gm162	homeodomain interacting protein kinase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97702606-4	chr11	97702498	97702698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011971)	promoter-TSS (NM_011971)	-836.0	NM_011971	26446.0	Mm.21874	NM_011971	ENSMUSG00000069744	Psmb3	AL033320|C10-II	proteasome (prosome, macropain) subunit, beta type 3	protein-coding	4.39342249552062	4.13937363365829	4.07210579191735	4.69602311836172	4.5878780158943	5.35674657661401	4.47703876227566	5.13063557359305	0.71925770232934	0.0602228325207683	0.36309990136288
Merged-chr6-72522545-4	chr6	72522456	72522656	+	991.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-21835.0	NM_007599	12332.0	Mm.18626	NM_007599	ENSMUSG00000056737	Capg	gCap39|mbh1	capping protein (actin filament), gelsolin-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-151571440-4	chr1	151571351	151571551	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022018)	promoter-TSS (NM_022018)	78.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95996120-4	chr3	95996031	95996231	+	990.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023320)	promoter-TSS (NM_023320)	-292.0	NM_023320	67220.0	Mm.458147	NM_023320	ENSMUSG00000015745	Plekho1	2810052M02Rik|CKIP-1|Ckip1|JZA-20|Jza2	pleckstrin homology domain containing, family O member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67648390-4	chr10	67648313	67648513	+	994.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-76454.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117343166-4	chr8	117343058	117343258	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	-6012.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-34390629-2	chr7	34390529	34390729	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360654)	promoter-TSS (NM_001360654)	-924.0	NM_025948	67070.0	Mm.276503	NM_025948	ENSMUSG00000066568	Lsm14a	2700023B17Rik|AA407828|AU017544|Tral|mRAP55A	LSM14A mRNA processing body assembly factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-45245686-4	chr2	45245586	45245786	+	911.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-128244.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-52101434-2	chr11	52101334	52101534	+	768.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019411, intron 1 of 6)	RSINE1|SINE|B4	2610.0	NM_019411	19052.0	Mm.260288	NM_019411	ENSMUSG00000020349	Ppp2ca	PP2A|R75353	protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-23746558-4	chr13	23746423	23746623	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175664)	promoter-TSS (NM_175664)	-211.0	NM_175664	319178.0	Mm.390567	NM_175664	ENSMUSG00000075031	Hist1h2bb	H2b-143	histone cluster 1, H2bb	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-173452564-1	chr1	173452464	173452664	+	713.0	f0_balb.idr	intron (NM_001013779, intron 2 of 8)	L2a|LINE|L2	31960.0	NM_001013779	383619.0	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-111130952-1	chr10	111130852	111131052	+	713.0	f0_balb.idr	Intergenic	Intergenic	-33850.0	NM_001003717	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-147012138-1	chr2	147012038	147012238	+	544.0	f1_balb.idr	promoter-TSS (NM_011917)	promoter-TSS (NM_011917)	-861.0	NM_001356403	24128.0	Mm.3065	NM_011917	ENSMUSG00000027433	Xrn2	-	5'-3' exoribonuclease 2	protein-coding	1.65156212805105	2.58935865559375	2.69191254323846	2.19916300221515	1.47146914926561	2.60917727262483	2.95359411444938	1.53993613669882	-0.057208683205724	0.951633332334058	0.998431161219273
Merged-chr1-13374244-6	chr1	13374098	13374298	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008678)	promoter-TSS (NM_008678)	-115.0	NM_008678	17978.0	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-109554488-2	chr5	109554388	109554588	+	717.666687	f1_balb.idr|f1_c57bl6.idr	TTS (NM_016715)	TTS (NM_016715)	4505.0	NM_016715	57914.0	Mm.35771	NM_016715	ENSMUSG00000033467	Crlf2	CRLM2|Ly114|Tpte2|Tslpr	cytokine receptor-like factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-120478883-3	chr14	120478742	120478942	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029519, exon 1 of 2)	exon (NM_029519, exon 1 of 2)	381.0	NM_029519	76108.0	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4059894-3	chr19	4059827	4060027	+	860.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001362043)	promoter-TSS (NM_001362043)	-480.0	NM_001362043	225884.0	Mm.440201	NM_144869	ENSMUSG00000058216	Gstp3	-	glutathione S-transferase pi 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167706356-2	chr2	167706256	167706456	+	608.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15179.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-60138522-4	chr3	60138423	60138623	+	688.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56654.0	NM_032400	84112.0	Mm.125110	NM_032400	ENSMUSG00000027762	Sucnr1	Gpr91	succinate receptor 1	protein-coding	0.33281820468119	0.0791914266199157	0.844706791343107	0.609847186392626	0.211540087361454	0.0805334121470445	0.0745467430774945	0.0694298421400621	-3.25476320217353	0.112309668999797	1
Merged-chr1-94035249-6	chr1	94035115	94035315	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14722.0	NM_001310769	241159.0	Mm.214565	NM_173772	ENSMUSG00000034000	Neu4	9330166I04	sialidase 4	protein-coding	2.02365978494428	3.37672004475218	3.05811274228205	2.28533454558984	2.97245884238043	1.39237589340462	2.62560017416532	1.30850234381095	-0.974153680865306	0.306019227639537	0.806865344318695
Merged-chr16-59617336-4	chr16	59617206	59617406	+	964.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019665, intron 7 of 7)	intron (NM_019665, intron 7 of 7)	-19639.0	NR_040564	75145.0	Mm.399348	NR_040564		4930547E14Rik	-	RIKEN cDNA 4930547E14 gene	ncRNA	2.45474512013148	2.11682261864098	2.88517196358834	2.32706833709645	3.25909157744292	2.49921846119512	2.80262275303235	3.57841127279547	1.19121974989267	0.0981453701496252	0.487193621966001
Merged-chr11-70397527-1	chr11	70397427	70397627	+	541.0	f1_c57bl6.idr	exon (NM_029231, exon 9 of 17)	exon (NM_029231, exon 9 of 17)	12504.0	NM_029231	75273.0	Mm.340601	NM_029231	ENSMUSG00000018921	Pelp1	4930563C04Rik|MNAR	proline, glutamic acid and leucine rich protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70221806-3	chr11	70221680	70221880	+	866.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172371)	promoter-TSS (NM_172371)	-786.0	NM_172371	69309.0	Mm.93266	NM_172371	ENSMUSG00000044367	Slc16a13	1700007D07Rik	solute carrier family 16 (monocarboxylic acid transporters), member 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6264490-2	chr19	6264390	6264590	+	726.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029830)	promoter-TSS (NR_029830)	-153.0	NR_029830	723957.0		NR_029830	ENSMUSG00000065582	Mir194-2	Mirn194-2|mir-194-2	microRNA 194-2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-58360096-1	chr11	58359996	58360196	+	587.5	f0_balb.idr	Intergenic	Intergenic	-18936.0	NM_027339	70163.0	Mm.24119	NM_027339	ENSMUSG00000013643	Lypd8	2210415F13Rik	LY6/PLAUR domain containing 8	protein-coding	0.608578687424921	0.712862022237283	0.68093446174513	0.6549102811477	1.94420145863805	0.719803642435082	2.51652400223874	2.9982358160547	5.81946832676198	6.68708442562337e-05	0.00222453712399157
Merged-chr16-28518359-1	chr16	28518259	28518459	+	1000.0	f1_balb.idr	intron (NM_010199, intron 2 of 5)	intron (NM_010199, intron 2 of 5)	46136.0	NM_001357064	14167.0	Mm.7996	NM_010199	ENSMUSG00000022523	Fgf12	AV114868|B230343J05Rik|FGF-12|FHF-1|Fhf1	fibroblast growth factor 12	protein-coding	1.0803902644476	0.922677198225885	0.728775160508673	0.722484245179795	1.35748749456226	0.928144320035413	1.18670091232199	1.50527320438512	2.14272525020793	0.146100506085172	0.596296396331935
Merged-chr17-8316209-2	chr17	8316107	8316307	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134114, intron 1 of 7)	ORR1D1|LTR|ERVL-MaLR	-5089.0	NR_073374	75060.0	Mm.426530	NR_073374	ENSMUSG00000087478	4930506C21Rik	-	RIKEN cDNA 4930506C21 gene	ncRNA	0.475889642399606	0.135391878029569	-0.218515967165505	-0.221989562926663	-0.226891767073862	-0.212990847947993	-0.217522257293651	0.0817753682357053	-1.95982219472858	0.421043612504683	1
Merged-chr4-134094631-2	chr4	134094531	134094731	+	959.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_013706, intron 1 of 1)	intron (NM_013706, intron 1 of 1)	442.0	NM_013706	23833.0	Mm.24130	NM_013706	ENSMUSG00000000682	Cd52	AI463198|B7|B7-Ag|CAMPATH-1|CLS1|MB7	CD52 antigen	protein-coding	0.986703683328943	1.13749093273967	1.50785523527262	0.581781527734216	0.734912284181932	1.14816091257512	0.792133713875773	0.583202170776608	-1.2949948383553	0.393149653922398	0.881793908479735
Merged-chr12-3960046-4	chr12	3959955	3960155	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008895, exon 3 of 3)	exon (NM_008895, exon 3 of 3)	5110.0	NM_001278583	18976.0	Mm.277996	NM_008895	ENSMUSG00000020660	Pomc	ACTH|BE|Beta-LPH|Clip|Gamma-LPH|Npp|Pomc-1|Pomc1|alpha-MSH|alphaMSH|beta-MSH|gamma-MSH	pro-opiomelanocortin-alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-20982187-4	chr11	20982125	20982325	+	947.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-109099.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-3368444-3	chr5	3368324	3368524	+	802.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 2 of 7)	intron (NM_009873, intron 2 of 7)	24531.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-9515765-2	chr3	9515665	9515865	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133218, intron 2 of 8)	intron (NM_133218, intron 2 of 8)	94320.0	NM_133218	170753.0	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-94870921-2	chr13	94870821	94871021	+	558.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4706.0	NM_011021	18420.0	Mm.42051	NM_011021	ENSMUSG00000021685	Otp	-	orthopedia homeobox	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99815052-4	chr15	99814924	99815124	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113545, intron 4 of 10)	intron (NM_001113545, intron 4 of 10)	5125.0	NM_023063	65970.0	Mm.33207	NM_023063	ENSMUSG00000023022	Lima1	Eplin	LIM domain and actin binding 1	protein-coding	5.10354190377579	4.95566835391533	5.23558170275823	5.13956833441628	4.82342888843985	4.59231790346807	4.88077814014539	3.25481986177822	-0.717016709657843	0.064887964907578	0.381238020685694
Merged-chr4-47319664-4	chr4	47319543	47319743	+	986.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33579.0	NM_001312868	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-108275008-2	chr12	108274908	108275108	+	854.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001159910, exon 1 of 6)	exon (NM_001159910, exon 1 of 6)	409.0	NM_001159910	668158.0	Mm.482792	NM_001159910	ENSMUSG00000084883	Ccdc85c	EG668158|Gm265|Gm9010|hhy	coiled-coil domain containing 85C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-140101572-2	chr7	140101472	140101672	+	570.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_104415, intron 2 of 5)	intron (NR_104415, intron 2 of 5)	869.0	NM_001286217	69064.0	Mm.41915	NM_026928	ENSMUSG00000025466	Fuom	Fucu|Le51	fucose mutarotase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95632452-4	chr3	95632370	95632570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_019561)	TTS (NM_019561)	7490.0	NM_001026212	56205.0	Mm.241365	NM_019561	ENSMUSG00000038619	Ensa	1700020C18Rik|2610007F17Rik|AI451924	endosulfine alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91085351-2	chr2	91085250	91085450	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-11328.0	NM_011355	20375.0	Mm.1302	NM_011355	ENSMUSG00000002111	Spi1	Dis-1|Dis1|PU.1|Sfpi-1|Sfpi1|Spi-1|Tcfpu1|Tfpu.1	spleen focus forming virus (SFFV) proviral integration oncogene	protein-coding	1.84297465887414	1.94605409973182	2.55029497771697	1.11842976063205	1.96175003014459	1.16738128944031	2.02090407380285	1.83385875896995	-0.490906362565294	0.659043397238658	0.989307199941957
Merged-chr2-172393624-4	chr2	172393533	172393733	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001276423)	promoter-TSS (NM_001276423)	-161.0	NM_001080820	320664.0	Mm.210195	NM_001033538	ENSMUSG00000074570	Cass4	F730031O20Rik	Cas scaffolding protein family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88625005-3	chr3	88624890	88625090	+	999.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198913, intron 1 of 21)	intron (NM_001198913, intron 1 of 21)	3596.0	NM_001198912	16800.0	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	1.0576462953744	1.18425989256768	1.14453335152756	2.28850621797644	1.65480778988684	0.920466318857765	1.15342561199722	2.49744351705489	0.480770690366749	0.69835189323472	0.998284579433352
Merged-chr6-72372752-2	chr6	72372652	72372852	+	598.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016872, intron 1 of 2)	B4A|SINE|B4	-5780.0	NM_001331167	66510.0	Mm.170023	NM_025607	ENSMUSG00000055850	Rnf181	1700047F16Rik|2500002L14Rik|6230415N01Rik|C77350	ring finger protein 181	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-66928781-4	chr10	66928671	66928871	+	822.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8387.0	NR_138561	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-4799376-1	chr18	4799276	4799476	+	833.0	f0_balb.idr	Intergenic	MLTR14|LTR|ERV1	-13110.0	NR_045881	100038439.0	Mm.387569	NR_045881	ENSMUSG00000097043	Gm10556	-	predicted gene 10556	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-34233169-3	chr13	34233056	34233256	+	788.8222049999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033167, intron 3 of 10)	intron (NM_001033167, intron 3 of 10)	70192.0	NM_001110515	69666.0	Mm.24788	NM_001101430	ENSMUSG00000071451	Psmg4	PAC-4|mPAC4	proteasome (prosome, macropain) assembly chaperone 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115558569-2	chr5	115558469	115558669	+	914.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007475)	promoter-TSS (NM_007475)	-898.0	NM_007475	11837.0	Mm.5286	NM_007475	ENSMUSG00000067274	Rplp0	36B4|Arbp|L10E	ribosomal protein, large, P0	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-69985370-4	chr7	69985274	69985474	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	352448.0	NR_131145	624549.0	Mm.116344	NR_131144	ENSMUSG00000109097	Gm29683	Gm44536	predicted gene, 29683	ncRNA	4.40687714649515	4.10833003055388	3.97504368256752	3.99559468540931	4.40165761694103	4.13729098911481	4.00516356683646	4.01533811604008	0.021616403702309	0.959014079498944	0.998431161219273
Merged-chr10-8873499-2	chr10	8873399	8873599	+	845.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 1 of 19)	B4A|SINE|B4	12571.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-61627997-3	chr9	61627879	61628079	+	853.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	255613.0	NM_001083927	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-153532391-4	chr1	153532283	153532483	+	719.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028749, intron 4 of 11)	intron (NM_028749, intron 4 of 11)	17331.0	NM_028749	74091.0	Mm.24887	NM_028749	ENSMUSG00000042684	Npl	0610033B02Rik	N-acetylneuraminate pyruvate lyase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-4847884-1	chr6	4847784	4847984	+	641.0	f1_c57bl6.idr	Intergenic	L1MEg|LINE|L1	-55436.0	NM_181595	243725.0	Mm.332901	NM_181595	ENSMUSG00000032827	Ppp1r9a	2810430P21Rik|4930518N04Rik|5330407E15|A230094E16Rik|BB181831|NRB|mKIAA1222|neurabin-I	protein phosphatase 1, regulatory (inhibitor) subunit 9A	protein-coding	-0.499940950918087	-0.487518524828365	0.0891561271406926	-0.494726023626598	-0.499164980458282	-0.486601867615524	0.100277611126392	-0.494177430718284	0.0410194320726077	0.98816738256539	1
Merged-chr13-95494997-3	chr13	95494893	95495093	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16338.0	NM_001081159	268686.0	Mm.291249	NM_001081159	ENSMUSG00000021679	S100z	Gm625	S100 calcium binding protein, zeta	protein-coding	4.78989757323665	4.97163748489048	5.19395516243229	5.33491008801126	2.92922290892574	2.93000753677549	1.65252195285112	1.56990306549677	-3.79269319689854	1.87385518286523e-11	4.74982700366557e-09
Merged-chr11-86724167-4	chr11	86724075	86724275	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003908, intron 8 of 31)	intron (NM_001003908, intron 8 of 31)	33392.0	NM_001003908	67300.0	Mm.254588	NM_001003908	ENSMUSG00000047126	Cltc	3110065L21Rik|CHC|R74732	clathrin, heavy polypeptide (Hc)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-22789812-3	chr2	22789707	22789907	+	563.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019456, intron 1 of 13)	L1MB7|LINE|L1	15480.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-50074295-4	chr6	50074185	50074385	+	974.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR16B_MM|LTR|ERVK	-35956.0	NM_019939	56524.0	Mm.41288	NM_008016	ENSMUSG00000038388	Mpp6	P55t|Pals2	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	protein-coding	4.1822511118825	3.60951732636905	4.98215760277934	3.94788551477611	4.83042786104616	3.63765167547155	3.6098253595944	4.94689881350415	0.166995841128871	0.737998090518884	0.998431161219273
Merged-chr4-105747924-4	chr4	105747823	105748023	+	891.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-493290.0	NR_151521	105244641.0	Mm.404914	NR_151521		Gm12724	-	predicted gene 12724	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-68117709-4	chr8	68117612	68117812	+	683.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-143138.0	NM_177698	234353.0	Mm.32525	NM_027626	ENSMUSG00000030465	Psd3	4931420C21Rik|AI661273|BC003498|D430018P08|EFA6D	pleckstrin and Sec7 domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-26411998-2	chr10	26411898	26412098	+	611.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-36779.0	NM_172787	237339.0	Mm.338439	NM_172787	ENSMUSG00000039089	L3mbtl3	AI481284|MBT-1	L3MBTL3 histone methyl-lysine binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-106760417-4	chr13	106760323	106760523	+	877.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	176535.0	NM_001360897	76582.0	Mm.132208	NM_029665	ENSMUSG00000042590	Ipo11	1700081H05Rik|2510001A17Rik|AI314624|AW555235|E330021B14Rik|Ranbp11	importin 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-31851257-1	chr11	31851157	31851357	+	687.0	f0_balb.idr	Intergenic	Intergenic	-19683.0	NM_001290676	67579.0	Mm.339792	NM_026252	ENSMUSG00000020300	Cpeb4	Cpe-bp4|Cpeb-4|mCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding	0.0657638875953415	0.0106293821184993	-0.0093597774460402	-0.179690078118351	-0.0468382365609835	0.421272003597092	-0.175504057495599	-0.179122364710879	0.544392808961683	0.797601363115176	1
Merged-chr16-55778714-3	chr16	55778608	55778808	+	847.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	43430.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70100087-4	chr14	70099987	70100187	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360404)	promoter-TSS (NM_001360404)	-6.0	NM_021328	57784.0	Mm.24186	NM_021328	ENSMUSG00000022089	Bin3	1700015F07Rik	bridging integrator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-36989086-4	chr5	36988974	36989174	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011716)	promoter-TSS (NM_011716)	-92.0	NM_011716	22393.0	Mm.20916	NM_011716	ENSMUSG00000039474	Wfs1	AI481085|wolframin	wolframin ER transmembrane glycoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-107590043-2	chr8	107589943	107590143	+	624.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR24|LTR|ERV1	-1561.0	NM_010817	17463.0	Mm.18347	NM_010817	ENSMUSG00000039067	Psmd7	AW107203|Mov-34|Mov34	proteasome (prosome, macropain) 26S subunit, non-ATPase, 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-108900351-4	chr3	108900248	108900448	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10340.0	NM_001165965	320181.0	Mm.244233	NM_177091	ENSMUSG00000045326	Fndc7	E230011A21Rik	fibronectin type III domain containing 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133853687-3	chr4	133853592	133853792	+	867.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009097, intron 17 of 21)	intron (NM_009097, intron 17 of 21)	21039.0	NM_001285506	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	2.63337474360916	2.06960961158038	3.49013335093964	1.44094533697699	2.31963518322043	3.27390459757164	3.38827621510064	2.89415869693653	0.687987278664531	0.404448829634319	0.88951064242073
Merged-chr5-105562200-2	chr5	105562100	105562300	+	719.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133897, intron 2 of 3)	B1F|SINE|Alu	42729.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-96494156-3	chr7	96494054	96494254	+	998.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011858, intron 3 of 32)	intron (NM_011858, intron 3 of 32)	-152190.0	NR_046043	670727.0	Mm.421352	NR_046043	ENSMUSG00000085751	Gm15412	-	predicted gene 15412	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97212220-4	chr6	97212134	97212334	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022992, intron 1 of 2)	intron (NM_022992, intron 1 of 2)	1442.0	NM_022992	65106.0	Mm.291014	NM_022992	ENSMUSG00000035199	Arl6ip5	5930404D22Rik|AV001879|Aip-5|Gtrap3-18|addiscin	ADP-ribosylation factor-like 6 interacting protein 5	protein-coding	3.56771294490614	4.49036093719617	3.2655984255749	4.10281081552987	3.52964247423186	3.6138849285871	3.58319949068232	3.70554618614147	-0.474829471216506	0.350677723726756	0.851344470809322
Merged-chr11-104379915-2	chr11	104379815	104380015	+	740.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359634, intron 3 of 14)	intron (NM_001359634, intron 3 of 14)	62376.0	NM_001081045	76719.0	Mm.136418	NM_001081045	ENSMUSG00000018412	Kansl1	1700081L11Rik|9430041J06Rik|mKIAA1267	KAT8 regulatory NSL complex subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-32934757-1	chr13	32934657	32934857	+	665.0	f0_c57.idr	Intergenic	MLTR25C|LTR|ERVK	-30756.0	NM_011454	20708.0	Mm.36526	NM_011454	ENSMUSG00000042842	Serpinb6b	NK13|Spi12|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 6b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141404117-2	chr4	141404017	141404217	+	562.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_019701)	TTS (NM_019701)	-5411.0	NM_024412	12733.0	Mm.167900	NM_024412	ENSMUSG00000033770	Clcnka	C75963|CLC-K1|Clcnk1	chloride channel, voltage-sensitive Ka	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-34096692-4	chr10	34096600	34096800	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178908)	promoter-TSS (NM_178908)	-181.0	NM_178908	103511.0	Mm.66334	NM_178908	ENSMUSG00000049872	Fam26e	BB146404|Calhm5	family with sequence similarity 26, member E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85347695-4	chr12	85347618	85347818	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026775, intron 3 of 4)	intron (NM_026775, intron 3 of 4)	-8356.0	NM_145138	217718.0	Mm.29071	NM_145138	ENSMUSG00000034290	Nek9	C130021H08Rik	NIMA (never in mitosis gene a)-related expressed kinase 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25708183-1	chr7	25708083	25708283	+	1000.0	f0_c57.idr	Intergenic	Intergenic	10870.0	NM_028771	52132.0	Mm.278798	NM_028771	ENSMUSG00000002608	Ccdc97	1200014H14Rik|2810446P04Rik|AA545218|D7Ertd462e	coiled-coil domain containing 97	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-123037588-1	chr8	123037488	123037688	+	699.0	f1_balb.idr	intron (NM_001081379, intron 1 of 12)	intron (NM_001081379, intron 1 of 12)	4696.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	1.75310431143345	1.10806171228114	1.90515369898463	1.8496663833122	2.18253226415094	1.71887779619957	1.79951977552791	1.07508111464853	0.205669022593578	0.859348378736782	0.998431161219273
Merged-chr2-12160737-2	chr2	12160637	12160837	+	931.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001309, intron 23 of 29)	intron (NM_001001309, intron 23 of 29)	-140509.0	NR_040353	338535.0	Mm.483275	NR_040353	ENSMUSG00000086843	E030013I19Rik	-	RIKEN cDNA E030013I19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-99165030-4	chr9	99164932	99165132	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24821.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-56718526-2	chr16	56718426	56718626	+	616.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER68|LTR|ERVL	-1076.0	NM_001357126	21787.0	Mm.425970	NM_019678	ENSMUSG00000022757	Tfg	AI173908	Trk-fused gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-5106540-2	chr15	5106440	5106640	+	975.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163138, intron 2 of 3)	B2_Mm2|SINE|B2	1993.0	NM_001163138	239319.0	Mm.31252	NM_001163138	ENSMUSG00000041849	Card6	D730008L15	caspase recruitment domain family, member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-110560767-4	chr13	110560670	110560870	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	165726.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	3.3032448691653	3.75680195615647	3.23931412648295	2.95150978267766	3.25825320341641	3.84733007773321	2.94228118919563	3.33967059847058	0.072265877803789	0.900340058750405	0.998431161219273
Merged-chr9-37028919-2	chr9	37028819	37029019	+	681.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001029838, intron 2 of 12)	intron (NM_001029838, intron 2 of 12)	118403.0	NM_148950	208076.0	Mm.260335	NM_148950	ENSMUSG00000035934	Pknox2	D230005H23Rik|Prep2	Pbx/knotted 1 homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-50825568-2	chr14	50825466	50825666	+	891.5	f0_balb.idr|f1_balb.idr	intron (NM_009351, intron 51 of 54)	intron (NM_009351, intron 51 of 54)	17650.0	NM_009632	11546.0	Mm.281482	NM_009632	ENSMUSG00000036023	Parp2	ADPRT-2|ARTD2|Adprt2|Adprtl2|Aspartl2|C78626|PARP-2|mPARP-2|pADPRT-2	poly (ADP-ribose) polymerase family, member 2	protein-coding	2.01392332124659	2.73226821232972	3.17672425817689	3.07888923335839	4.06260794906789	4.01905857638342	4.85489693663004	4.00851809065616	2.19000251335795	0.000102168803153291	0.00311716542487388
Merged-chr14-14003000-4	chr14	14002892	14003092	+	859.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9499.0	NM_139227	246103.0	Mm.133625	NM_139227	ENSMUSG00000021738	Atxn7	A430107N12Rik|AI627028|Sca7|ataxin-7	ataxin 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32424149-4	chr2	32424039	32424239	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290558)	promoter-TSS (NM_001290558)	-73.0	NM_001290558	227731.0	Mm.37395	NM_146118	ENSMUSG00000026819	Slc25a25	1110030N17Rik|MCSC|mKIAA1896	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-145785153-3	chr2	145785064	145785264	+	647.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028724)	promoter-TSS (NM_028724)	-952.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-3646850-2	chr8	3646750	3646950	+	852.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ZP3AR|Satellite|Satellite	-8920.0	NM_001204959	57264.0	Mm.1181	NM_022984	ENSMUSG00000012705	Retn	ADSF|Fizz3|Rstn|Xcp4	resistin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140606719-2	chr5	140606619	140606819	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008494)	promoter-TSS (NM_008494)	-622.0	NM_008494	16848.0	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-19983115-4	chr16	19983010	19983210	+	952.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183390)	promoter-TSS (NM_183390)	-61.0	NM_183390	239743.0	Mm.86699	NM_183390	ENSMUSG00000043008	Klhl6	-	kelch-like 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-153952153-1	chr1	153952053	153952253	+	955.0	f0_balb.idr	Intergenic	MLTR14|LTR|ERV1	52224.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-98716209-4	chr7	98716102	98716302	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_028410, exon 5 of 5)	exon (NM_028410, exon 5 of 5)	12955.0	NM_028410	72981.0	Mm.4428	NM_028410	ENSMUSG00000030753	Thap12	2900052B10Rik|Dap4|Prkrir|Rpkrir	THAP domain containing 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-23954715-4	chr18	23954629	23954829	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027007)	promoter-TSS (NM_027007)	41.0	NM_027007	69256.0	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47740508-2	chr17	47740408	47740608	+	661.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161723, intron 1 of 8)	B3A|SINE|B2	2577.0	NM_001161723	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	0.970804625501635	0.110917443163111	0.104433423145987	0.0994121349626725	0.595566985760977	0.112375420566904	0.105865820117909	0.549798931817983	-0.214169636783583	0.920644195810387	1
Merged-chr3-69923214-4	chr3	69923075	69923275	+	955.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MMVL30-int|LTR|ERV1	-63281.0	NM_001286959	66183.0	Mm.45481	NM_133675	ENSMUSG00000043461	Sptssb	1110032A04Rik|ADMP|Sssptb	serine palmitoyltransferase, small subunit B	protein-coding	1.27421986184966	0.987850693795172	1.86457620153294	1.09537096753539	1.04826156969263	0.994351767279387	1.28357463781582	0.746409387122552	-1.37361546959342	0.30359893103156	0.805462835517226
Merged-chr13-105299412-2	chr13	105299312	105299512	+	956.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4927.0	NM_001360891	71816.0	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-142392032-4	chr7	142391931	142392131	+	837.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC5a|LINE|L1	-4161.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-26637258-4	chr11	26637117	26637317	+	977.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-43297.0	NM_001252447	69922.0	Mm.285351	NM_027260	ENSMUSG00000064090	Vrk2	2810003O05Rik|AI447698	vaccinia related kinase 2	protein-coding	3.04621921504055	3.5040674328485	4.20567992250532	2.06801190537748	3.22250640292311	2.91716222102942	2.81550148792068	2.59132795750793	-0.846608789295268	0.224046614711694	0.715557573197225
Merged-chr2-94265388-1	chr2	94265288	94265488	+	617.0	f0_c57.idr	Intergenic	Intergenic	-3989.0	NR_030431	735259.0		NR_030431	ENSMUSG00000076335	Mir670	Mirn670|mir-670|mmu-mir-670	microRNA 670	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46515551-3	chr19	46515463	46515663	+	936.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_053100, exon 6 of 6)	exon (NM_053100, exon 6 of 6)	13915.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41495641-4	chr19	41495549	41495749	+	893.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29603.0	NM_001326287	627352.0	Mm.395111	NM_001326287		Morf4l1b	EG627352|Gm6747	mortality factor 4 like 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-53141195-4	chr15	53141111	53141311	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	204972.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98814085-4	chr11	98813985	98814185	+	807.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138660, intron 3 of 13)	HAL1M8|LINE|L1	-3996.0	NR_033551	100037262.0	Mm.442062	NR_033551	ENSMUSG00000075576	Gm12359	-	predicted gene 12359	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106443759-2	chr11	106443659	106443859	+	613.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023913, intron 2 of 21)	intron (NM_023913, intron 2 of 21)	44037.0	NM_023913	78943.0	Mm.340943	NM_023913	ENSMUSG00000020715	Ern1	9030414B18Rik|AI225830|C85377|Ire1a|Ire1alpha|Ire1p	endoplasmic reticulum (ER) to nucleus signalling 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-17402433-4	chr17	17402321	17402521	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025681)	promoter-TSS (NM_025681)	-265.0	NM_025681	66643.0	Mm.268018	NM_025681	ENSMUSG00000047786	Lix1	5730466L18Rik	limb and CNS expressed 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-110907725-4	chr13	110907670	110907870	+	940.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_131193, exon 5 of 5)	non-coding (NR_131193, exon 5 of 5)	-3924.0	NR_131194	102636142.0	Mm.417611	NR_131194		4930526H09Rik	-	RIKEN cDNA 4930526H09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-64431810-2	chr13	64431719	64431919	+	748.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053180)	promoter-TSS (NM_053180)	-734.0	NM_053180	105278.0	Mm.74982	NM_053180	ENSMUSG00000021483	Cdk20	4932702G04Rik|AU019450|AW558027|CDCH|Ccrk|PNQLARE|p42	cyclin-dependent kinase 20	protein-coding	2.15743851794823	0.998995670007245	2.85923199921958	0.94651165055772	1.89562414135507	1.00536128532997	2.29509245415258	1.21053978220511	-0.717151983119361	0.570195324567215	0.962718661854691
Merged-chr7-110629194-2	chr7	110629094	110629294	+	668.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009627, exon 4 of 4)	3' UTR (NM_009627, exon 4 of 4)	1537.0	NM_009627	11535.0	Mm.1408	NM_009627	ENSMUSG00000030790	Adm	AM	adrenomedullin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16617171-2	chr7	16617071	16617271	+	680.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_136929, intron 1 of 2)	B3|SINE|B2	-2178.0	NM_172739	232906.0	Mm.28646	NM_172739	ENSMUSG00000058230	Arhgap35	6430596G11Rik|AI841135|Grlf1|mKIAA1722|p190A|p190RhoGAP	Rho GTPase activating protein 35	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-149307965-3	chr6	149307854	149308054	+	801.416687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MERV1_LTR|LTR|ERV1	-1460.0	NM_001289661	67246.0	Mm.333515	NM_026054	ENSMUSG00000032712	2810474O19Rik	6720435I21Rik|AA536804|AU020969|GET|Kiaa1551	RIKEN cDNA 2810474O19 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-32392713-2	chr17	32392613	32392813	+	585.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001347343, exon 16 of 19)	exon (NM_001347343, exon 16 of 19)	-3274.0	NR_033525	22404.0	Mm.274948	NM_011717	ENSMUSG00000024050	Wiz	-	widely-interspaced zinc finger motifs	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-51611840-4	chr6	51611725	51611925	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	66532.0	NM_001361577	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-40272435-1	chr8	40272335	40272535	+	821.5	f0_balb.idr	Intergenic	Intergenic	14518.0	NM_030610	80857.0	Mm.425526	NM_030610	ENSMUSG00000031603	Fgf20	-	fibroblast growth factor 20	protein-coding	-0.294083384950798	-0.277963382818132	0.430175288204581	-0.287290034214969	-0.293070061983337	-0.276782190008417	0.44311158986884	-0.286577643912737	0.0410571026119648	0.987250810110592	1
Merged-chr8-4140259-4	chr8	4140145	4140345	+	864.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5509.0	NM_027343	70192.0	Mm.390006	NM_027343	ENSMUSG00000079168	Cd209g	2310066I10Rik|AI481039|SIGNR7	CD209g antigen	protein-coding	4.12728766739433	4.00824525868816	4.05845232604182	3.71157619740149	3.26214198185427	2.64061116711965	3.70063215594881	3.2475985801012	-1.06624678790922	0.0396332829233629	0.283340979454888
Merged-chr1-51767739-2	chr1	51767639	51767839	+	551.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010863, intron 22 of 29)	intron (NM_010863, intron 22 of 29)	148239.0	NM_001161817	17912.0	Mm.3390	NM_010863	ENSMUSG00000018417	Myo1b	AA406997|MIH-L|MMIa	myosin IB	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-53344098-4	chr10	53344013	53344213	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001141927, exon 3 of 3)	3' UTR (NM_001141927, exon 3 of 3)	6427.0	NM_001141927	18821.0	Mm.34145	NM_023129	ENSMUSG00000038583	Pln	Plb	phospholamban	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-110431578-1	chr13	110431478	110431678	+	587.0	f0_balb.idr	Intergenic	Intergenic	36534.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	0.730231321620414	0.38420225459134	0.549734922025109	0.787468481006201	0.835558018201407	0.385708393818438	0.378996174731328	0.994564902912299	0.368822518211642	0.833330830518259	1
Merged-chr2-166820832-2	chr2	166820732	166820932	+	701.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085495, intron 1 of 38)	MTE2a|LTR|ERVL-MaLR	15251.0	NM_001085495	99371.0	Mm.297192	NM_001085495	ENSMUSG00000074582	Arfgef2	AI463430|AW493672|BIG2|E230011G24Rik	ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-34216137-4	chr8	34215984	34216184	+	834.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49372.0	NR_105820	102465211.0		NR_105820	ENSMUSG00000098785	Mir6395	Gm27561|mmu-mir-6395	microRNA 6395	ncRNA	0.911681372461738	1.01147467301083	1.76510294206625	1.86740749676558	1.20907184222829	1.37788565725243	0.764193873219281	0.751085258722656	-1.5631261428851	0.258812000585571	0.759224054529505
Merged-chr10-88683627-4	chr10	88683493	88683693	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011461)	promoter-TSS (NM_011461)	-570.0	NM_011461	20728.0	Mm.21642	NM_011461	ENSMUSG00000004359	Spic	AU019198|C76795|Prf|Spi-C	Spi-C transcription factor (Spi-1/PU.1 related)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-60590700-3	chr3	60590610	60590810	+	724.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310514, intron 2 of 8)	intron (NM_001310514, intron 2 of 8)	89531.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-36971179-2	chr14	36971079	36971279	+	709.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER5A|DNA|hAT-Charlie	-2415.0	NM_027045	72972.0	Mm.27621	NM_027045	ENSMUSG00000058690	Ccser2	1700012P13Rik|2900054P12Rik|AI035535|AW108503|Fam190b|Gcap14	coiled-coil serine rich 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-115058466-1	chr4	115058366	115058566	+	625.0	f1_balb.idr	intron (NM_001287388, intron 1 of 4)	intron (NM_001287388, intron 1 of 4)	655.0	NM_001287388	21349.0	Mm.239869	NM_011527	ENSMUSG00000028717	Tal1	Hpt|SCL/tal-1|Scl|bHLHa17|tal-1	T cell acute lymphocytic leukemia 1	protein-coding	-0.2050119060817	-0.184824548061639	-0.191365552201867	-0.196459638322045	-0.203731923272197	0.520239475467961	0.773193692744459	-0.195566657205276	4.09768134884504	0.0838143302410438	1
Merged-chr7-64751689-2	chr7	64751618	64751818	+	754.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291166, intron 14 of 14)	intron (NM_001291166, intron 14 of 14)	121322.0	NM_023239	66647.0	Mm.19944	NM_023239	ENSMUSG00000070520	Nsmce3	5730494G16Rik|AI642138|BB044375|HCA4|Mageg1|Ndnl2|mage-g1	NSE3 homolog, SMC5-SMC6 complex component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75935928-3	chr11	75935823	75936023	+	914.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10032.0	NM_001291159	380714.0	Mm.425697	NM_029548	ENSMUSG00000020847	Rph3al	Gm1753|Noc2	rabphilin 3A-like (without C2 domains)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-12881169-2	chr13	12881069	12881269	+	615.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-81090.0	NM_011118	18812.0	Mm.457984	NM_011118	ENSMUSG00000056457	Prl2c3	Ghd1|MRP-2|MRP-3|Mrpplf3|PLF-2|PLF-3|Plf2|Prl2c4|mrp/plf3	prolactin family 2, subfamily c, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84071942-3	chr8	84071840	84072040	+	693.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009055, intron 1 of 20)	intron (NM_009055, intron 1 of 20)	5104.0	NM_009055	19724.0	Mm.7892	NM_009055	ENSMUSG00000031706	Rfx1	AI047719|AI385641	regulatory factor X, 1 (influences HLA class II expression)	protein-coding	1.45946588578646	1.5991968395723	2.50266715851849	2.00737361756785	2.48236510215652	2.1495783959521	2.32341815106531	2.25219879740074	0.855592447820313	0.355488839504378	0.853664850644233
Merged-chr18-40899144-2	chr18	40899044	40899244	+	681.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus4|LINE|L1	640783.0	NM_026135	383348.0	Mm.76366	NM_026135	ENSMUSG00000051401	Kctd16	4930434H12Rik|Gm1267	potassium channel tetramerisation domain containing 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-34861138-10	chr18	34861005	34861205	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007913)	promoter-TSS (NM_007913)	-102.0	NM_007913	13653.0	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153338550-3	chr2	153338469	153338669	+	877.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7241.0	NR_040318	72326.0	Mm.400102	NR_040318	ENSMUSG00000073236	2500004C02Rik	-	RIKEN cDNA 2500004C02 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-90487360-1	chr6	90487260	90487460	+	733.0	f0_balb.idr	Intergenic	Intergenic	24784.0	NM_023184	66277.0	Mm.38343	NM_023184	ENSMUSG00000030087	Klf15	1810013I09Rik|AV048136|AW494632|CKLF|KKLF	Kruppel-like factor 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-65504670-1	chr18	65504570	65504770	+	772.0	f1_balb.idr	intron (NR_105742, intron 3 of 6)	intron (NR_105742, intron 3 of 6)	73673.0	NM_172833	240354.0	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	0.638459513138269	1.34220495324875	0.677275210953619	1.08044302504199	0.851429741679841	0.699205299355122	1.78888741347883	2.17272490437895	1.99144182359131	0.170850624424443	0.638454877027969
Merged-chr11-62559116-4	chr11	62559011	62559211	+	963.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7380.0	NM_001313984	22187.0	Mm.371592	NM_011664	ENSMUSG00000019505	Ubb	AL033289|Rps27a|Uba52|Ubb2|Ubc	ubiquitin B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102286995-2	chr12	102286895	102287095	+	594.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161365, intron 1 of 9)	intron (NM_001161365, intron 1 of 9)	3354.0	NM_001161365	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124722207-2	chr6	124722107	124722307	+	770.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077705, intron 11 of 15)	intron (NM_001077705, intron 11 of 15)	-3817.0	NR_029792	723944.0		NR_029792	ENSMUSG00000065462	Mir200c	Mirn200c|mir-200c	microRNA 200c	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91899693-4	chr16	91899510	91899710	+	908.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010587, exon 33 of 39)	exon (NM_010587, exon 33 of 39)	32020.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0.638469439567481	1.70852682227422	2.05957328194917	1.21702640871202	1.15231309796217	0.693874060795187	0.677451728895676	0.886047049031168	-2.55320857220456	0.085042405176475	0.448020902351155
Merged-chr19-39210708-1	chr19	39210608	39210808	+	551.0	f1_balb.idr	Intergenic	RMER13A|LTR|ERVK	-18546.0	NR_033614	638988.0	Mm.483843	NR_033614	ENSMUSG00000093610	Cyp2c53-ps	Cyp2c53|EG638988	cytochrome P450, family 2, subfamily c, polypeptide 53-ps	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-5214739-4	chr5	5214649	5214849	+	881.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011074, intron 4 of 14)	intron (NM_011074, intron 4 of 14)	51319.0	NM_001310448	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	1.25392954743646	1.33257958674543	1.1575023144645	0.661112713500949	1.26652713490766	0.681948483352861	1.16807854622567	0.662531945297059	-0.666888320685804	0.66422585906581	0.991874608829023
Merged-chr11-120618856-2	chr11	120618756	120618956	+	560.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347615)	promoter-TSS (NM_001347615)	-911.0	NM_001347615	68671.0	Mm.21439	NM_024229	ENSMUSG00000025137	Pcyt2	1110033E03Rik|ET	phosphate cytidylyltransferase 2, ethanolamine	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-103169970-4	chr3	103169879	103170079	+	915.462524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_177857)	TTS (NM_177857)	-1676.0	NM_026602	68183.0	Mm.104919	NM_026602	ENSMUSG00000005687	Bcas2	6430539P16Rik|AI132645|C76366|C80030	breast carcinoma amplified sequence 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-62820786-2	chr11	62820686	62820886	+	919.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_053169, exon 1 of 6)	exon (NM_053169, exon 1 of 6)	533.0	NM_053169	94092.0	Mm.117087	NM_053169	ENSMUSG00000047821	Trim16	9130006M08Rik|AI482483|EBBP	tripartite motif-containing 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126971111-4	chr8	126971003	126971203	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172762)	promoter-TSS (NM_172762)	-24.0	NM_172762	52202.0	Mm.28199	NM_172762	ENSMUSG00000033931	Rbm34	4930547K05Rik|6330444B11|D8Ertd233e	RNA binding motif protein 34	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-137415010-3	chr7	137414916	137415116	+	884.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-4260.0	NM_029886	77252.0	Mm.29184	NM_029886	ENSMUSG00000040139	9430038I01Rik	-	RIKEN cDNA 9430038I01 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-47771310-2	chr12	47771210	47771410	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17B|LTR|ERVK	-952535.0	NM_021361	664883.0	Mm.247195	NM_021361	ENSMUSG00000021047	Nova1	9430099M15Rik|G630039L02|Nova-1	neuro-oncological ventral antigen 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-127398972-1	chr2	127398872	127399072	+	554.0	f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-26227.0	NM_001081089	215456.0	Mm.440454	NM_001081089	ENSMUSG00000046338	Gpat2	A530057A03Rik|Gm116|xGPAT1	glycerol-3-phosphate acyltransferase 2, mitochondrial	protein-coding	-0.37790657608628	-0.7425209476875	-0.745752534966227	-0.748241895791257	-0.75175369388296	-0.741791734322997	-0.166202711934189	-0.747807260520129	0.813296986456869	0.785019466223198	1
Merged-chr19-11601481-1	chr19	11601381	11601581	+	909.0	f1_c57bl6.idr	intron (NM_026835, intron 3 of 6)	intron (NM_026835, intron 3 of 6)	3323.0	NM_026835	68774.0	Mm.290390	NM_026835	ENSMUSG00000024679	Ms4a6d	1110058E16Rik|AI447446|Ms4a11	membrane-spanning 4-domains, subfamily A, member 6D	protein-coding	2.91590055118271	3.19367380955117	1.95543406975329	3.68886500428126	2.70176367754465	2.24494983470577	1.74057850568667	2.25806262560777	-1.51683172892676	0.057483830427807	0.355022819563913
Merged-chr1-21036046-4	chr1	21035949	21036149	+	988.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177409, intron 2 of 10)	intron (NM_177409, intron 2 of 10)	43176.0	NM_177409	170829.0	Mm.185680	NM_177409	ENSMUSG00000041779	Tram2	C330003D03Rik	translocating chain-associating membrane protein 2	protein-coding	4.27436537395721	3.42267603555496	3.96506074994144	3.92340239846768	4.99805247825364	4.74178654303559	5.3187961958718	4.90735277392974	1.34847005414658	0.000492919456683559	0.0110062921363946
Merged-chr1-149841071-4	chr1	149841001	149841201	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008869, intron 16 of 17)	intron (NM_008869, intron 16 of 17)	81338.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-95336836-4	chr11	95336762	95336962	+	996.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172543)	promoter-TSS (NM_172543)	-156.0	NM_172543	215512.0	Mm.262113	NM_172543	ENSMUSG00000038893	Fam117a	5730593F17Rik|AW548096	family with sequence similarity 117, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-76446150-2	chr11	76446050	76446250	+	654.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346670, intron 15 of 21)	intron (NM_001346670, intron 15 of 21)	22315.0	NM_001291186	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-23758971-4	chr19	23758865	23759065	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177034)	promoter-TSS (NM_177034)	89.0	NM_177034	319924.0	Mm.22879	NM_177034	ENSMUSG00000024897	Apba1	6430513E09Rik|Lin-10|Mint|Mint1|Urop11|X11|X11alpha	amyloid beta (A4) precursor protein binding, family A, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117839414-2	chr11	117839314	117839514	+	684.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_027827, exon 11 of 11)	3' UTR (NM_027827, exon 11 of 11)	-9823.0	NM_001012273	11799.0	Mm.8552	NM_009689	ENSMUSG00000017716	Birc5	AAC-11|Api4|TIAP|survivin40	baculoviral IAP repeat-containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-58497382-2	chr10	58497282	58497482	+	885.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162956)	promoter-TSS (NM_001162956)	-555.0	NM_001162956	76138.0	Mm.211744	NM_001162956	ENSMUSG00000038010	Ccdc138	6230424H07Rik|BC042726	coiled-coil domain containing 138	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-103659796-2	chr5	103659696	103659896	+	872.025024	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4064.0	NM_001163550	74218.0	Mm.159141	NM_028824	ENSMUSG00000029320	1700016H13Rik	-	RIKEN cDNA 1700016H13 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-120137617-4	chr2	120137486	120137686	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133838, intron 1 of 5)	intron (NM_133838, intron 1 of 5)	16989.0	NM_133838	98878.0	Mm.132226	NM_133838	ENSMUSG00000027293	Ehd4	2210022F10Rik|AI197390|AI846352|AV006278|Past2	EH-domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-28428221-2	chr6	28428121	28428321	+	708.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019569, intron 1 of 6)	(TG)n|Simple_repeat|Simple_repeat	320.0	NM_019569	56223.0	Mm.31708	NM_019569	ENSMUSG00000029707	Fscn3	-	fascin actin-bundling protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-100671019-3	chr13	100670995	100671195	+	726.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168386, intron 1 of 9)	intron (NM_001168386, intron 1 of 9)	1614.0	NM_001168386	76041.0	Mm.23977	NM_183115	ENSMUSG00000048924	Ccdc125	5830436D01Rik|AL023012	coiled-coil domain containing 125	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-88333628-6	chr10	88333514	88333714	+	983.677795	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027878, intron 4 of 6)	intron (NM_027878, intron 4 of 6)	23461.0	NM_027878	71712.0	Mm.35450	NM_027878	ENSMUSG00000020057	Dram1	1200002N14Rik|Dram	DNA-damage regulated autophagy modulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-11964258-4	chr15	11964158	11964358	+	797.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2804.0	NR_040447	73339.0	Mm.231975	NR_040447	ENSMUSG00000099349	1700047G03Rik	-	RIKEN cDNA 1700047G03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-114667656-4	chr5	114667504	114667704	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-9183.0	NM_022017	63873.0	Mm.266450	NM_022017	ENSMUSG00000014158	Trpv4	0610033B08Rik|OTRPC4|Trp12|VR-OAC|VRL-2|VROAC	transient receptor potential cation channel, subfamily V, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139384776-4	chr5	139384669	139384869	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030258, intron 1 of 1)	intron (NM_030258, intron 1 of 1)	4130.0	NM_030258	80290.0	Mm.270003	NM_030258	ENSMUSG00000044197	Gpr146	BC003323|D830046C22Rik|PGR8	G protein-coupled receptor 146	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116652819-2	chr11	116652719	116652919	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030206, intron 1 of 3)	intron (NM_030206, intron 1 of 3)	1494.0	NM_030206	114886.0	Mm.34598	NM_030206	ENSMUSG00000020810	Cygb	3110001K20Rik|HGb|Staap	cytoglobin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-6547312-2	chr2	6547212	6547412	+	645.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310447, intron 10 of 11)	intron (NM_001310447, intron 10 of 11)	174350.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80181650-2	chr10	80181550	80181750	+	964.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007909, intron 1 of 3)	intron (NM_007909, intron 1 of 3)	2168.0	NM_007909	13637.0	Mm.1478	NM_007909	ENSMUSG00000003070	Efna2	CEK7L|Elf1|Epl6|Eplg6|Lerk6	ephrin A2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-74872062-1	chr16	74871962	74872162	+	637.0	f1_c57bl6.idr	intron (NM_001358493, intron 1 of 28)	Lx9|LINE|L1	220708.0	NM_001358491	268902.0	Mm.171736	NM_175549	ENSMUSG00000052516	Robo2	2600013A04Rik|9430089E08Rik|BB097918|D230004I22Rik|mKIAA1568	roundabout guidance receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44317103-1	chr9	44317003	44317203	+	543.0	f1_balb.idr	exon (NM_027909, exon 3 of 14)	exon (NM_027909, exon 3 of 14)	3179.0	NM_001359259	71764.0	Mm.491174	NM_027909	ENSMUSG00000032120	C2cd2l	1300006O23Rik|Tmem24	C2 calcium-dependent domain containing 2-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-7264215-2	chr19	7264115	7264315	+	818.583313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3179.0	NM_054048	104383.0	Mm.283859	NM_054048	ENSMUSG00000024968	Rcor2	1A13|AW122124|CoREST|Rcor|Rcor1	REST corepressor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-150836112-3	chr2	150836068	150836268	+	757.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151505, intron 10 of 12)	B4|SINE|B4	6402.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-23616144-3	chr5	23616039	23616239	+	790.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152854, intron 2 of 14)	intron (NR_152854, intron 2 of 14)	432.0	NM_001359175	20817.0	Mm.288728	NM_009274	ENSMUSG00000062604	Srpk2	AW226533|AW492537|AW547358|Wbp6|mSRPK2	serine/arginine-rich protein specific kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-44048472-4	chr14	44048378	44048578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42060.0	NM_001011876	630952.0		NM_001011876	ENSMUSG00000072598	Ang6	EG630952	angiogenin, ribonuclease A family, member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-84065342-1	chr4	84065242	84065442	+	772.0	f0_balb.idr	Intergenic	Intergenic	-20463.0	NR_130998	78238.0	Mm.243903	NR_130998	ENSMUSG00000085217	6030471H07Rik	-	RIKEN cDNA 6030471H07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3902552-2	chr12	3902452	3902652	+	868.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153743, intron 13 of 17)	intron (NM_153743, intron 13 of 17)	10808.0	NM_153743	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-144783742-2	chr7	144783642	144783842	+	545.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45150.0	NM_001242349	101772.0	Mm.26700	NM_178642	ENSMUSG00000031075	Ano1	Tmem16a	anoctamin 1, calcium activated chloride channel	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126802129-2	chr7	126802029	126802229	+	549.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4_|SINE|ID	-1682.0	NM_001177308	11674.0	Mm.275831	NM_007438	ENSMUSG00000030695	Aldoa	Aldo-1|Aldo1	aldolase A, fructose-bisphosphate	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-149103640-4	chr3	149103543	149103743	+	894.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-149008.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10171970-4	chr19	10171874	10172074	+	805.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	-10914.0	NM_146094	76267.0	Mm.30158	NM_146094	ENSMUSG00000010663	Fads1	0710001O03Rik|A930006B21Rik|AI317215|DSD	fatty acid desaturase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-55621911-2	chr16	55621811	55622011	+	799.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	127180.0	NR_039578	100628589.0		NR_039578	ENSMUSG00000093292	Mir5118	mmu-mir-5118|mu-mir-5118	microRNA 5118	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-118978024-4	chr10	118978066	118978266	+	784.035706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51023.0	NR_110482	216377.0	Mm.208936	NR_110482	ENSMUSG00000112854	Gm38403	C230029M16	predicted gene, 38403	ncRNA	0.598253206231833	0.433158961353659	0.416267061859203	1.89736308252474	0.605592744938808	0.436885674760978	0.42004471299764	1.91094431377741	0.0291746772434295	0.98610696686418	0.998431161219273
Merged-chr7-19318740-5	chr7	19318629	19318829	+	997.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-8684.0	NM_001347586	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-17507302-4	chr12	17507212	17507412	+	869.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37561.0	NM_013614	18263.0	Mm.34102	NM_013614	ENSMUSG00000011179	Odc1	ODC	ornithine decarboxylase, structural 1	protein-coding	0.676399792859089	0.778783782839326	2.72552265741211	0.721777334774174	0.951001088814503	2.7220498899535	0.754434758256494	2.10727477170874	0.633700251906063	0.810273886102094	0.998431161219273
Merged-chr6-39328827-2	chr6	39328727	39328927	+	635.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48608.0	NR_155076	72144.0	Mm.482167	NM_028123	ENSMUSG00000029924	Slc37a3	2610507O21Rik|AU044904	solute carrier family 37 (glycerol-3-phosphate transporter), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-94891500-4	chr3	94891378	94891578	+	815.875	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-4520.0	NM_008945	19172.0	Mm.368	NM_008945	ENSMUSG00000005779	Psmb4	Pros-27	proteasome (prosome, macropain) subunit, beta type 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-49075834-3	chr11	49075733	49075933	+	768.75	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271677)	promoter-TSS (NM_001271677)	-754.0	NM_001271677	15953.0	Mm.24769	NM_008330	ENSMUSG00000078920	Ifi47	47kDa|IRG-47|Ifggc1|Igrd|Iigp4|Iipg4|Irgd	interferon gamma inducible protein 47	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-48537571-3	chr6	48537467	48537667	+	929.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347164)	promoter-TSS (NM_001347164)	-2.0	NM_001347164	76252.0	Mm.30214	NM_133764	ENSMUSG00000039347	Atp6v0e2	0610006O14Rik|NM9.2	ATPase, H+ transporting, lysosomal V0 subunit E2	protein-coding	2.50975321813509	3.63629212413268	3.12174647435015	4.05652789132713	6.1734339789874	5.37884291982263	5.43212708869953	6.06234377780899	2.91016992681464	1.9924779082635e-12	6.18252153707211e-10
Merged-chr11-57801992-1	chr11	57801892	57802092	+	739.666687	f0_balb.idr	promoter-TSS (NR_131042)	promoter-TSS (NR_131042)	355.0	NM_001081168	50724.0	Mm.340083	NM_001081168	ENSMUSG00000020519	Sap30l	2310079P12Rik|AF006998|L55	SAP30-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-74237909-4	chr1	74237814	74238014	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357387, intron 2 of 10)	intron (NM_001357387, intron 2 of 10)	1397.0	NM_029711	76709.0	Mm.337038	NM_029711	ENSMUSG00000006304	Arpc2	2210023N03Rik|34kDa|p34-Arc	actin related protein 2/3 complex, subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-30508785-2	chr6	30508685	30508885	+	724.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_178625, exon 2 of 15)	exon (NM_178625, exon 2 of 15)	988.0	NM_001347087	72649.0	Mm.45418	NM_178625	ENSMUSG00000029782	Tmem209	2700094F01Rik|AI428435	transmembrane protein 209	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-165691691-4	chr1	165691583	165691783	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038846, intron 1 of 5)	intron (NM_001038846, intron 1 of 5)	16411.0	NM_001038846	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-102060475-4	chr5	102060380	102060580	+	972.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 1 of 66)	intron (NM_172882, intron 1 of 66)	9441.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-82834629-3	chr11	82834524	82834724	+	880.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164570, intron 1 of 7)	B2_Mm1t|SINE|B2	-5581.0	NM_026097	67338.0	Mm.341608	NM_026097	ENSMUSG00000020696	Rffl	1700051E09Rik|4930516L10Rik|BG080975|Carp2	ring finger and FYVE like domain containing protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-24547457-4	chr8	24547353	24547553	+	987.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145949, intron 5 of 9)	Lx5c|LINE|L1	28880.0	NM_145949	209176.0	Mm.219580	NM_145949	ENSMUSG00000031549	Ido2	AI265623|C230043N17Rik|Ido-2|Indol1	indoleamine 2,3-dioxygenase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-20508710-2	chr13	20508601	20508801	+	836.0	f0_balb.idr|f1_balb.idr	intron (NM_198093, intron 1 of 6)	intron (NM_198093, intron 1 of 6)	35711.0	NM_198093	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	0.801735877124567	0.884036353235324	0.858375528914982	0.837758487467864	1.77232016355085	2.51476850836883	1.95364939086203	2.25598456135258	5.56703794503977	5.39915349325397e-05	0.00186146677046153
Merged-chr10-112835649-1	chr10	112835549	112835749	+	720.0	f0_balb.idr	Intergenic	L1M3|LINE|L1	-2103.0	NR_152199	100042639.0	Mm.403280	NR_152199		Gm3942	-	predicted gene 3942	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19871403-4	chr7	19871308	19871508	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10109.0	NM_001033419	330483.0	Mm.260192	NM_001033419	ENSMUSG00000014686	Ceacam16	Gm769	carcinoembryonic antigen-related cell adhesion molecule 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16929803-2	chr7	16929703	16929903	+	955.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-5771.0	NM_007590	12315.0	Mm.288630	NM_007590	ENSMUSG00000019370	Calm3	CaMA|Cam3|Camc|R75142	calmodulin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-79679395-2	chr10	79679295	79679495	+	750.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-2800.0	NM_001359818	216150.0	Mm.21981	NM_177613	ENSMUSG00000020307	Cdc34	AI327276|E2-CDC34|UBE2R1	cell division cycle 34	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28601928-3	chr7	28601828	28602028	+	951.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3744.0	NM_027470	70584.0	Mm.21876	NM_027470	ENSMUSG00000030602	Pak4	5730488L07Rik|AW555722|mKIAA1142	p21 (RAC1) activated kinase 4	protein-coding	2.52799839360766	2.14041169753942	1.63394907808212	1.59211162515109	1.92013642967588	1.87302973189005	1.2091557636101	2.31710553235916	-0.386641875098902	0.708196616734815	0.998431161219273
Merged-chr5-135682962-2	chr5	135682862	135683062	+	794.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6183.0	NM_008898	18984.0	Mm.3863	NM_008898	ENSMUSG00000005514	Por	4933424M13Rik|CPR|CYPOR|P450R	P450 (cytochrome) oxidoreductase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-68204625-3	chr10	68204517	68204717	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023598, intron 3 of 9)	intron (NM_023598, intron 3 of 9)	74109.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	2.5406887995985	2.34993823444073	1.67061910374905	1.84449813997923	3.15239284950457	3.75056411167192	2.5643121891614	2.04448987275896	1.71407632164536	0.0378643339115604	0.276672520262425
Merged-chr5-41627701-4	chr5	41627606	41627806	+	961.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310589, intron 6 of 6)	intron (NM_001310589, intron 6 of 6)	79985.0	NM_001310592	100972.0	Mm.41555	NM_027295	ENSMUSG00000029128	Rab28	2700023P08Rik|AW496496	RAB28, member RAS oncogene family	protein-coding	0.829895994033173	1.70281377723845	1.12140070048239	2.24130755310655	1.81973758646797	2.08116692637384	0.880923404552871	0.862186167623693	-0.191235567847745	0.888515862518813	0.998431161219273
Merged-chr4-128680679-4	chr4	128680576	128680776	+	829.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195130, intron 1 of 14)	intron (NM_001195130, intron 1 of 14)	-8062.0	NM_018774	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-5155566-2	chr18	5155466	5155666	+	991.6666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10165.0	NR_153824	102637682.0	Mm.451914	NR_153824		Gm26682	Gm38715	predicted gene, 26682	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-102057657-2	chr5	102057557	102057757	+	730.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 1 of 66)	intron (NM_172882, intron 1 of 66)	12264.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-14604281-6	chr2	14604267	14604467	+	646.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023116)	promoter-TSS (NM_023116)	61.0	NM_023116	12296.0	Mm.313930	NM_023116	ENSMUSG00000057914	Cacnb2	AW060387|CAB2|Cavbeta2|Cchb2	calcium channel, voltage-dependent, beta 2 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72566209-4	chr6	72566101	72566301	+	840.6749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_144917, exon 13 of 13)	3' UTR (NM_144917, exon 13 of 13)	16554.0	NM_001271395	12332.0	Mm.18626	NM_007599	ENSMUSG00000056737	Capg	gCap39|mbh1	capping protein (actin filament), gelsolin-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-110164272-4	chr7	110164185	110164385	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42226.0	NM_009516	22390.0	Mm.287173	NM_009516	ENSMUSG00000031016	Wee1	Wee1A	WEE 1 homolog 1 (S. pombe)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-75799300-1	chr13	75799200	75799400	+	720.0	f1_balb.idr	Intergenic	RLTR13D6|LTR|ERVK	-40585.0	NM_001360151	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	1.50330231089638	1.42024277527687	1.11006170594183	1.20863799238463	0.90071750946288	0.776289408317497	0.957765117232682	1.21525019493129	-1.64354467903545	0.223466820026803	0.714791840691861
Merged-chr14-19776289-2	chr14	19776189	19776389	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008695, intron 4 of 20)	intron (NM_008695, intron 4 of 20)	25032.0	NM_008695	18074.0	Mm.20348	NM_008695	ENSMUSG00000021806	Nid2	AW547149|Ly111|NID-2|entactin-2|nidogen-2	nidogen 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27032538-2	chr17	27032438	27032638	+	648.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_027544, intron 2 of 5)	intron (NM_027544, intron 2 of 5)	3279.0	NM_027544	70772.0	Mm.440437	NM_027544	ENSMUSG00000048731	Ggnbp1	0610031G08Rik|mdf	gametogenetin binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3562899-4	chr19	3562790	3562990	+	925.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360430, intron 1 of 22)	L1M5|LINE|L1	12859.0	NM_001360430	52036.0	Mm.284686	NM_028999	ENSMUSG00000024908	Ppp6r3	4930528G08Rik|9130026N02Rik|D19Bwg1430e|D19Ertd703e|Pp6r3|Ppcs3|Pptcs3|Sapl|Saps3|mKIAA1558	protein phosphatase 6, regulatory subunit 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-25038672-4	chr8	25038666	25038866	+	754.512512	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_031257)	TTS (NM_031257)	196.0	NM_001081187	330723.0	Mm.334452	NM_001081187	ENSMUSG00000037406	Htra4	B430206E18Rik	HtrA serine peptidase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-98071778-4	chr7	98071649	98071849	+	849.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008663, intron 30 of 48)	intron (NM_008663, intron 30 of 48)	37499.0	NM_001256082	17921.0	Mm.1403	NM_008663	ENSMUSG00000030761	Myo7a	Hdb|Myo7|USH1B|nmf371|polka|sh-1|sh1	myosin VIIA	protein-coding	0.903644206216183	1.56157272123398	1.16601248227866	2.27695247128772	1.51831679739774	1.20814490337928	1.5184824800135	1.60059941080897	-0.451176082508354	0.711163992624191	0.998431161219273
Merged-chr18-65706038-2	chr18	65705938	65706138	+	680.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177028, intron 1 of 14)	intron (NM_177028, intron 1 of 14)	7770.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	-0.849540347160918	-0.83791883826935	-0.842874229298225	-0.845379854937529	-0.567718301155892	-0.197178340663439	-0.842158039317344	-0.844942093372508	3.16182143622335	0.281564155371618	1
Merged-chr2-163987656-4	chr2	163987573	163987773	+	943.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MCb|LINE|L1	-7524.0	NM_018753	54401.0	Mm.34319	NM_018753	ENSMUSG00000018326	Ywhab	1300003C17Rik|14-3-3b	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127121234-4	chr10	127121112	127121312	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001171026)	promoter-TSS (NM_001171026)	-52.0	NM_001171026	216440.0	Mm.295246	NM_177614	ENSMUSG00000040462	Os9	4632413K17Rik|AU022351	amplified in osteosarcoma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-3622424-4	chr2	3622310	3622510	+	945.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	C-rich|Low_complexity|Low_complexity	-91048.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-31135775-4	chr2	31135682	31135882	+	963.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355105, intron 1 of 15)	intron (NM_001355105, intron 1 of 15)	6226.0	NM_001355106	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69074107-2	chr11	69074007	69074207	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_028566)	TTS (NR_028566)	681.0	NR_028566	100216530.0	Mm.453052	NR_028566	ENSMUSG00000064899	Snord118	MBI-34	small nucleolar RNA, C/D box 118	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-120744544-2	chr10	120744444	120744644	+	608.583374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21188.0	NR_038000	70874.0	Mm.427286	NR_038000	ENSMUSG00000044544	4921513I03Rik	-	RIKEN cDNA 4921513I03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-8752135-1	chr19	8752035	8752235	+	605.0	f1_balb.idr	intron (NM_019829, intron 9 of 9)	intron (NM_019829, intron 9 of 9)	4834.0	NR_132423	102640359.0	Mm.440831	NR_132423		1700023D09Rik	AV208457	RIKEN cDNA 1700023D09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-27693349-2	chr3	27693249	27693449	+	541.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356953, intron 1 of 26)	intron (NM_001356953, intron 1 of 26)	17103.0	NM_001356953	72007.0	Mm.38832	NM_173182	ENSMUSG00000039286	Fndc3b	1600019O04Rik|AW550168|Fad104|mKIAA4164	fibronectin type III domain containing 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-32996766-2	chr6	32996666	32996866	+	799.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355667, intron 3 of 8)	intron (NM_001355667, intron 3 of 8)	63494.0	NM_001355667	66075.0	Mm.21501	NM_025336	ENSMUSG00000053768	Chchd3	0610041L09Rik|1700039J09Rik|AW558177	coiled-coil-helix-coiled-coil-helix domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-138075385-1	chr4	138075285	138075485	+	541.0	f1_c57bl6.idr	intron (NM_001256195, intron 4 of 34)	MTB_Mm|LTR|ERVL-MaLR	63133.0	NR_126429	73563.0	Mm.444294	NR_126429	ENSMUSG00000084804	1700095J12Rik	-	RIKEN cDNA 1700095J12 gene	ncRNA	0.31434089178798	1.09851363210551	0.330895728889372	0.501308826132055	0.473917701252707	0.998364254184007	0.332660484807513	0.784745700660935	0.344791110997127	0.845637994627551	1
Merged-chr9-22326310-6	chr9	22326202	22326402	+	794.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4388.0	NR_033622	625603.0	Mm.37987	NR_033622		Gm6607	EG625603	40S ribosomal protein S20 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25282065-4	chr7	25281978	25282178	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027882)	promoter-TSS (NM_027882)	-101.0	NM_027882	71722.0	Mm.28833	NM_027882	ENSMUSG00000005442	Cic	1200010B10Rik|mKIAA0306	capicua transcriptional repressor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-13596713-2	chr8	13596613	13596813	+	628.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 5 of 23)	intron (NM_009025, intron 5 of 23)	-34252.0	NM_001080781	66501.0	Mm.46136	NM_025601	ENSMUSG00000031452	1700029H14Rik	-	RIKEN cDNA 1700029H14 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-124658082-2	chr4	124657982	124658182	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_011141, exon 1 of 1)	exon (NM_011141, exon 1 of 1)	436.0	NM_011141	18991.0	Mm.297371	NM_011141	ENSMUSG00000090125	Pou3f1	Oct-6|Oct6|Otf-6|Otf6|Scip|Test1|Tst-1|Tst1	POU domain, class 3, transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-68204064-3	chr10	68203975	68204175	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023598, intron 3 of 9)	intron (NM_023598, intron 3 of 9)	74651.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	3.04343898425443	1.58684256348056	1.82085406785621	3.45746758937471	4.33222299936829	3.978640186227	2.09169247209694	3.99670973778087	1.7014740837006	0.0287655882987164	0.230141504130087
Merged-chr16-24627178-2	chr16	24627078	24627278	+	571.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 5 of 12)	intron (NM_178665, intron 5 of 12)	-94677.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36563156-2	chr18	36563056	36563256	+	586.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_175375, intron 1 of 33)	B3|SINE|B2	2553.0	NM_175375	108857.0	Mm.482287	NM_175375	ENSMUSG00000024483	Ankhd1	1110004O12Rik|4933432B13Rik|9130019P20Rik|A530027J04Rik|A630021B20Rik|AA571404|Mask|mFLJ00246|mKIAA1085	ankyrin repeat and KH domain containing 1	protein-coding	0.813290187006563	0.190013332799942	0.183776214961207	0.483977950902735	0.44563032660393	0.814712198047508	0.185152536268087	0.179800465511048	-0.0772879492413882	0.968879696089287	1
Merged-chr17-51177658-3	chr17	51177571	51177771	+	858.805542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028162, intron 1 of 21)	intron (NM_028162, intron 1 of 21)	1681.0	NM_028162	72238.0	Mm.120650	NM_028162	ENSMUSG00000023923	Tbc1d5	1600014N05Rik	TBC1 domain family, member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-94507298-4	chr6	94507193	94507393	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026255, intron 1 of 9)	intron (NM_026255, intron 1 of 9)	6979.0	NM_026255	67582.0	Mm.280725	NM_026255	ENSMUSG00000045100	Slc25a26	4930433D19Rik|4933433F13Rik|AW557176|D6Bwg0781e|Slc25a6	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106289649-3	chr11	106289545	106289745	+	888.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12251.0	NM_008117	14599.0	Mm.343934	NM_008117	ENSMUSG00000020713	Gh	Gh1|Ghb1	growth hormone	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-155236509-4	chr2	155236392	155236592	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291108)	promoter-TSS (NM_001291108)	-41.0	NR_111891	67068.0	Mm.23693	NM_025947	ENSMUSG00000047459	Dynlrb1	2010012N15Rik|2010320M17Rik|9430076K19Rik|AV124457|DNLC2A|Dncl2a|km23-1	dynein light chain roadblock-type 1	protein-coding	7.0747754402548	6.26417028682085	6.07349266859499	6.66333314950416	7.07712729878461	6.93928061106204	5.84241795516369	6.99171187745825	0.228094603386981	0.397950876564269	0.884187892040389
Merged-chr10-85968251-4	chr10	85968195	85968395	+	736.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177772, intron 12 of 15)	intron (NM_177772, intron 12 of 15)	-10502.0	NM_145422	28088.0	Mm.9257	NM_145422	ENSMUSG00000001783	Rtcb	AI255213|AI463255|D10Wsu52e|FAAP|HSPC117	RNA 2',3'-cyclic phosphate and 5'-OH ligase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-85001556-4	chr15	85001454	85001654	+	891.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13583.0	NM_001033273	223739.0	Mm.323925	NM_001033273	ENSMUSG00000036046	5031439G07Rik	AW554572|mKIAA0930	RIKEN cDNA 5031439G07 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-64868134-2	chr18	64868047	64868247	+	921.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19609.0	NM_001114386	83814.0	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107261068-4	chr9	107260951	107261151	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316691, intron 4 of 7)	intron (NM_001316691, intron 4 of 7)	28345.0	NM_001316691	102626.0	Mm.222612	NM_178907	ENSMUSG00000032577	Mapkapk3	3PK|AI874665|MAPKAP-K3|MAPKAP3|MK-3|MK3|MapkKapk3	mitogen-activated protein kinase-activated protein kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-56612694-2	chr13	56612639	56612839	+	769.125	f1_balb.idr|f1_c57bl6.idr	intron (NR_155548, intron 1 of 16)	intron (NR_155548, intron 1 of 16)	3153.0	NR_155548	21810.0	Mm.14455	NM_009369	ENSMUSG00000035493	Tgfbi	68kDa|AI181842|AI747162|Beta-ig|big-h3	transforming growth factor, beta induced	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-128693257-2	chr8	128693157	128693357	+	641.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010578, intron 1 of 15)	RMER4B|LTR|ERVK	7603.0	NM_010578	16412.0	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-92637132-4	chr7	92637054	92637254	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028665)	promoter-TSS (NM_028665)	-12.0	NM_028665	73845.0	Mm.73248	NM_028665	ENSMUSG00000041343	Ankrd42	4931426M20|4933417L02Rik|Ikbn	ankyrin repeat domain 42	protein-coding	-1.56355737717652	-1.81244775989375	-1.82128546162293	-1.82854501295842	-1.83962066705452	-1.81053259306168	-1.81928479966835	-1.82724555674025	-1.28500227969968	0.715751224811686	1
Merged-chr15-86137185-2	chr15	86137111	86137311	+	932.75	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001205353, exon 19 of 19)	3' UTR (NM_001205353, exon 19 of 19)	-48517.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32310268-2	chr2	32310168	32310368	+	863.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_125959, intron 20 of 21)	intron (NR_125959, intron 20 of 21)	-7997.0	NR_128563	104795665.0		NR_128563	ENSMUSG00000092765	Gm23363	Mir3154|mir-3154|mmu-mir-3154	predicted gene, 23363	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-27855011-2	chr15	27854911	27855111	+	743.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081302, exon 13 of 57)	exon (NM_001081302, exon 13 of 57)	170837.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-134607322-4	chr5	134607214	134607414	+	964.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020044, intron 3 of 12)	intron (NM_020044, intron 3 of 12)	7711.0	NM_022964	56743.0	Mm.391375	NM_020044	ENSMUSG00000040751	Lat2	AW125574|LAB|NTAL|WSCR5|Wbscr15|Wbscr5	linker for activation of T cells family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-146158204-4	chr3	146158104	146158304	+	993.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005846, intron 1 of 13)	intron (NM_001005846, intron 1 of 13)	8030.0	NM_001005846	68279.0	Mm.116862	NM_026656	ENSMUSG00000011008	Mcoln2	3300002C04Rik|AI549968|C86638|TRPML2	mucolipin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-87441973-2	chr11	87441873	87442073	+	688.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199293, intron 2 of 30)	intron (NM_001199293, intron 2 of 30)	14382.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-103650153-3	chr14	103650065	103650265	+	848.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361639)	promoter-TSS (NM_001361639)	-63.0	NM_198014	105439.0	Mm.27548	NM_198014	ENSMUSG00000055717	Slain1	9630044O09Rik|AA675320|AW742596	SLAIN motif family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-106429266-1	chr7	106429166	106429366	+	587.0	f0_balb.idr	intron (NR_003967, intron 2 of 2)	L1_Mus3|LINE|L1	11807.0	NR_003967	209380.0	Mm.461779	NM_001001318		Gm4759	EG209380	GTPase, very large interferon inducible 1 pseudogene	pseudo	1.95582569989487	1.01094752878152	0.97490641648017	0.945572279893562	2.08567709997875	1.33231226097937	3.33432693692859	2.58303871534076	2.99288151483395	0.0106855093818973	0.114280489534513
Merged-chr4-59594756-4	chr4	59594606	59594806	+	950.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301367, intron 5 of 11)	MTC|LTR|ERVL-MaLR	13143.0	NM_024255	72479.0	Mm.272905	NM_024255	ENSMUSG00000028383	Hsdl2	2610207I16Rik	hydroxysteroid dehydrogenase like 2	protein-coding	-0.559281895742325	-0.686470032179927	-0.689528542471175	-0.179531438632571	-0.695186478294564	-0.685778743551657	-0.688855127545811	-0.396119637370247	-1.17466276071662	0.67151026783841	1
Merged-chr17-73416521-4	chr17	73416418	73416618	+	861.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-17222.0	NM_001033444	381122.0	Mm.81496	NM_001033444	ENSMUSG00000043705	Capn13	CANP 13|Gm943	calpain 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-45388382-4	chr13	45388333	45388533	+	797.892822	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1309.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-24823588-2	chr8	24823488	24823688	+	681.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001272057, intron 1 of 18)	intron (NM_001272057, intron 1 of 18)	781.0	NM_001272058	11499.0	Mm.143889	NM_007401	ENSMUSG00000031554	Adam5	tMDC II|tMDCII	a disintegrin and metallopeptidase domain 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-30616944-4	chr14	30616845	30617045	+	774.200012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011103, intron 1 of 17)	intron (NM_011103, intron 1 of 17)	-6635.0	NM_001310682	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-65076397-2	chr12	65076297	65076497	+	601.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178912, intron 1 of 22)	intron (NM_178912, intron 1 of 22)	791.0	NM_178912	104806.0	Mm.374847	NM_178912	ENSMUSG00000055884	Fancm	AI427100|C730036B14Rik|D12Ertd364e	Fanconi anemia, complementation group M	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-69357135-4	chr12	69357037	69357237	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025441)	promoter-TSS (NM_025441)	39.0	NM_025441	66244.0	Mm.46705	NM_025441	ENSMUSG00000020982	Nemf	1500011I12Rik|4933405E14Rik|Sdccag1	nuclear export mediator factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-95896117-2	chr16	95896017	95896217	+	757.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_040484, intron 1 of 3)	ORR1F|LTR|ERVL-MaLR	2596.0	NR_040485	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-30619284-2	chr14	30619184	30619384	+	664.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011103, intron 1 of 17)	intron (NM_011103, intron 1 of 17)	6924.0	NM_011103	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-22228806-3	chr8	22228713	22228913	+	807.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205253, intron 1 of 3)	intron (NM_001205253, intron 1 of 3)	1510.0	NM_001293688	56229.0	Mm.32067	NM_019576	ENSMUSG00000031480	Thsd1	4833423O18Rik|Tmtsp	thrombospondin, type I, domain 1	protein-coding	0.723904479289994	0.613592934900943	1.23882265127873	0.753245735467201	1.05164801916835	1.09094112858745	0.775888245436912	0.892019225665059	0.512077047385896	0.727669335484897	1
Merged-chr3-89796527-4	chr3	89796397	89796597	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MDa|LINE|L1	22888.0	NM_027315	70093.0	Mm.41438	NM_027315	ENSMUSG00000042572	Ube2q1	1110002C01Rik|2310012M18Rik|AI854014|Gtap|NICE-5|PRO3094|Ube2q	ubiquitin-conjugating enzyme E2Q family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-84061491-4	chr6	84061406	84061606	+	763.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077694, intron 4 of 54)	intron (NM_001077694, intron 4 of 54)	42120.0	NM_021469	26903.0	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-11459264-2	chr4	11459164	11459364	+	595.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-26694.0	NM_001081183	66185.0	Mm.331487	NM_001081183	ENSMUSG00000040720	Virma	1110037F02Rik|4930422M05Rik|Kiaa1429|mKIAA1429	vir like m6A methyltransferase associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-118585988-3	chr10	118585888	118586088	+	724.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-29463.0	NR_104123	103214.0	Mm.30529	NR_104123	ENSMUSG00000112230	Ifngas1	AI447422|Tmevpg1	Ifng antisense RNA 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-18055776-2	chr2	18055676	18055876	+	687.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_149308)	promoter-TSS (NR_149308)	48.0	NR_149308	17354.0	Mm.209175	NM_010804	ENSMUSG00000026743	Mllt10	Af10|B130021D15Rik|D630001B22Rik|mKIAA4140	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-137899079-3	chr1	137898975	137899175	+	657.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-67380.0	NR_029795	735252.0		NR_029795	ENSMUSG00000065565	Mir181a-1	Mirn181a-1|Mirn213|miR-213|mir-181a-1|mmu-mir-213	microRNA 181a-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-21843480-3	chr14	21843361	21843561	+	876.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011695, intron 8 of 9)	intron (NM_011695, intron 8 of 9)	-4117.0	NM_176925	319486.0	Mm.390671	NM_176925	ENSMUSG00000090564	A430057M04Rik	-	RIKEN cDNA A430057M04 gene	protein-coding	0.850274816194252	0.711447899642786	0.696751812751326	1.21189478130866	1.96725081950089	0.714715563612952	1.52148288860876	1.348506302597	2.41894172107343	0.101747857827168	0.495873941474591
Merged-chr19-56397271-4	chr19	56397138	56397338	+	995.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_007611, exon 1 of 7)	5' UTR (NM_007611, exon 1 of 7)	109.0	NM_007611	12369.0	Mm.35687	NM_007611	ENSMUSG00000025076	Casp7	AI314680|CMH-1|ICE-IAP3|Mch3|caspase-7|mCASP-7	caspase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-36117524-4	chr13	36117430	36117630	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024274)	promoter-TSS (NM_024274)	-113.0	NM_024274	69955.0	Mm.70690	NM_024274	ENSMUSG00000021420	Fars2	Fars1|pheRS	phenylalanine-tRNA synthetase 2 (mitochondrial)	protein-coding	6.79843287975432	7.29742817199067	6.68752297494038	7.08473147145617	7.44768256790311	7.00229412982011	6.87959029308278	6.99611434143931	0.127280125683548	0.511996235235731	0.945260181117916
Merged-chr7-143007522-3	chr7	143007433	143007633	+	891.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020286, intron 2 of 7)	intron (NM_020286, intron 2 of 7)	1874.0	NM_001128081	27027.0	Mm.28172	NM_020286	ENSMUSG00000000244	Tspan32	AW208513|Art-1|BB235973|D7Wsu37e|Phemx|Tssc6	tetraspanin 32	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69118079-4	chr11	69118039	69118239	+	950.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2314.0	NM_033041	84653.0	Mm.98505	NM_033041	ENSMUSG00000023781	Hes7	bHLHb37	hes family bHLH transcription factor 7	protein-coding	1.75684593606639	2.10242332414497	2.02947607469089	1.71482328351447	2.56636194602876	1.20206519047474	1.41598834056071	1.98139256546471	0.0593515436372377	0.955191232610167	0.998431161219273
Merged-chr1-156719857-1	chr1	156719757	156719957	+	549.0	f1_balb.idr	promoter-TSS (NM_145413)	promoter-TSS (NM_145413)	-947.0	NM_145413	215015.0	Mm.229107	NM_145413	ENSMUSG00000033557	Fam20b	C530043G21Rik|mKIAA0475	family with sequence similarity 20, member B	protein-coding	0.0975277513380315	1.14768095982439	0.495678678341448	0.108609604835133	0.0991892960680118	0.837618989836208	0.117057474950202	0.109764100125192	-1.12461363423809	0.58803108661521	1
Merged-chr11-61782974-2	chr11	61782874	61783074	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013881, intron 23 of 26)	RLTR17|LTR|ERVK	-20886.0	NM_001164243	212627.0	Mm.27703	NM_144806	ENSMUSG00000020528	Prpsap2	A230054F23Rik	phosphoribosyl pyrophosphate synthetase-associated protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-79015793-2	chr12	79015664	79015864	+	795.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-8487.0	NM_178745	268567.0	Mm.341747	NM_178745	ENSMUSG00000046157	Tmem229b	6330442E10Rik|9830138K24|AU019070	transmembrane protein 229B	protein-coding	0.427010678793285	0.298608683708854	0.291203007204856	0.28546394895484	0.957852521737467	0.300273139572424	0.894271366520069	0.949105816592323	3.56520189981809	0.0614287099150633	1
Merged-chr7-17056924-1	chr7	17056824	17057024	+	745.0	f1_c57bl6.idr	promoter-TSS (NM_016868)	promoter-TSS (NM_016868)	-245.0	NM_016868	53417.0	Mm.135110	NM_016868	ENSMUSG00000004328	Hif3a	Ipas|MOP7|NEPAS|bHLHe17	hypoxia inducible factor 3, alpha subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-34583045-2	chr19	34582945	34583145	+	817.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010501)	promoter-TSS (NM_010501)	-484.0	NM_010501	15959.0	Mm.426079	NM_010501	ENSMUSG00000074896	Ifit3	Ifi49|P49	interferon-induced protein with tetratricopeptide repeats 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-89280220-2	chr15	89280120	89280320	+	569.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026813, intron 18 of 24)	intron (NM_026813, intron 18 of 24)	25512.0	NR_105924	102465981.0		NR_105924	ENSMUSG00000098442	Mir6959	Gm27807|mmu-mir-6959	microRNA 6959	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-67205949-3	chr18	67205837	67206037	+	893.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_024190, exon 1 of 1)	exon (NM_024190, exon 1 of 1)	578.0	NM_024190	67064.0	Mm.73777	NM_024190	ENSMUSG00000109901	Chmp1b	2810405I11Rik|Chmp1b1	charged multivesicular body protein 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21207047-2	chr9	21206947	21207147	+	655.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183408, intron 14 of 14)	intron (NM_183408, intron 14 of 14)	10342.0	NM_019798	18577.0	Mm.191749	NM_019798	ENSMUSG00000032177	Pde4a	D9Ertd60e|Dpde2	phosphodiesterase 4A, cAMP specific	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-181529289-3	chr2	181529200	181529400	+	745.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271584, intron 2 of 5)	intron (NM_001271584, intron 2 of 5)	8815.0	NM_001271584	13002.0	Mm.140761	NM_016775	ENSMUSG00000000826	Dnajc5	2610314I24Rik|AU018536|Csp	DnaJ heat shock protein family (Hsp40) member C5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-92388298-2	chr11	92388198	92388398	+	592.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-710068.0	NM_001361707	72605.0	Mm.342160	NM_028296	ENSMUSG00000056158	Car10	2700029L05Rik|BB085816|Ca10	carbonic anhydrase 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-4779630-4	chr8	4779528	4779728	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011369)	promoter-TSS (NM_011369)	-61.0	NM_011369	20419.0	Mm.37801	NM_011369	ENSMUSG00000022322	Shcbp1	mPAL	Shc SH2-domain binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133204615-3	chr4	133204477	133204677	+	912.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7959.0	NM_008154	14748.0	Mm.4721	NM_008154	ENSMUSG00000049649	Gpr3	Gpcr20|Gpcr21|Gpcr3	G-protein coupled receptor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-18992749-3	chr2	18992647	18992847	+	937.333374	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008845, intron 1 of 9)	RLTR12G|LTR|ERVK	5374.0	NM_008845	18718.0	Mm.313977	NM_008845	ENSMUSG00000026737	Pip4k2a	AW742916|Pip5k2a	phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-36238478-4	chr2	36238370	36238570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008969, intron 5 of 10)	MamGypLTR3a|LTR|Gypsy	8044.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-136470730-3	chr4	136470633	136470833	+	888.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024452, intron 1 of 4)	CpG	972.0	NM_024452	269593.0	Mm.485824	NM_024452	ENSMUSG00000001089	Luzp1	2700072H04Rik|AI266952|Luzp|mFLJ00226	leucine zipper protein 1	protein-coding	0.540595459911359	1.29850081472136	0.397039643496039	0.389825429206003	0.545783119154481	0.408372924455381	1.14753436998584	0.870283882005834	0.238402142068588	0.889166148115967	1
Merged-chr2-24976685-3	chr2	24976592	24976792	+	866.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146251, intron 1 of 34)	B1_Mus2|SINE|Alu	659.0	NM_146251	241274.0	Mm.389243	NM_146251	ENSMUSG00000036833	Pnpla7	BC027342|E430013P11Rik|Nre	patatin-like phospholipase domain containing 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80778573-4	chr7	80778430	80778630	+	894.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016721, intron 2 of 37)	intron (NM_016721, intron 2 of 37)	24801.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	4.26703544543094	4.54784899253092	4.01810732800563	3.61912485358442	4.37830556792192	3.49441067503836	3.83429224059644	4.16441116677953	-0.179636937105932	0.696157409065103	0.997923870727665
Merged-chr6-53986398-3	chr6	53986225	53986425	+	940.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110484, intron 1 of 3)	intron (NR_110484, intron 1 of 3)	7634.0	NR_110484	320178.0	Mm.320413	NR_110484	ENSMUSG00000108060	4921529L05Rik	4930590G02Rik	RIKEN cDNA 4921529L05 gene	ncRNA	3.90877979887265	3.38425139462154	4.72734423914518	1.79571579018701	1.43736456723441	2.40953616063659	2.11456405442428	1.22988724723147	-3.35087157671355	0.000110991786501983	0.00334033307972606
Merged-chr14-63144336-4	chr14	63144251	63144451	+	876.1166380000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010191)	TTS (NM_010191)	21889.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-90654434-2	chr15	90654338	90654538	+	670.083374	f0_balb.idr|f1_balb.idr	intron (NM_001033851, intron 1 of 3)	intron (NM_001033851, intron 1 of 3)	24950.0	NM_025815	66871.0	Mm.290991	NM_025815	ENSMUSG00000052560	Cpne8	1200003E11Rik|1500031E20Rik	copine VIII	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5954068-2	chr19	5953968	5954168	+	778.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164057, intron 5 of 17)	intron (NM_001164057, intron 5 of 17)	10138.0	NM_001164057	18969.0	Mm.209931	NM_008893	ENSMUSG00000024833	Pola2	AI573378	polymerase (DNA directed), alpha 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-88288219-2	chr8	88288119	88288319	+	660.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001037723)	promoter-TSS (NM_001037723)	-847.0	NM_001037723	11513.0	Mm.288206	NM_007406	ENSMUSG00000031659	Adcy7	AA407758	adenylate cyclase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-40737204-2	chr13	40737104	40737304	+	568.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2284.0	NM_001301674	21418.0	Mm.85544	NM_011547	ENSMUSG00000021359	Tfap2a	AP-2|AP2alpha|Ap-2 (a)|Ap2|Ap2tf|Tcfap2a	transcription factor AP-2, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28354054-2	chr7	28353954	28354154	+	798.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	2514.0	NR_028129	100302567.0		NR_028129		AF357399	MBI-142	snoRNA AF357399	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123720553-3	chr5	123720451	123720651	+	899.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027494, intron 1 of 13)	CpG	493.0	NM_027494	70650.0	Mm.279427	NM_027494	ENSMUSG00000029427	Zcchc8	5730565F05Rik	zinc finger, CCHC domain containing 8	protein-coding	0.616269590010509	1.72930215902825	1.09983446905085	0.640910777981452	0.620010269192763	1.74594326133154	1.95519651908442	0.643437789362777	0.909323117409735	0.559984681689418	0.960321604678676
Merged-chr6-122577209-3	chr6	122577160	122577360	+	900.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_031159)	TTS (NM_031159)	23451.0	NM_009645	11628.0	Mm.391503	NM_009645	ENSMUSG00000040627	Aicda	Aid|Arp2	activation-induced cytidine deaminase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-58913766-4	chr4	58913636	58913836	+	900.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172381)	promoter-TSS (NM_172381)	-987.0	NM_172381	230249.0	Mm.234801	NM_172381	ENSMUSG00000050812	AI314180	AW558785|BB181316|Ecpas|mKIAA0368	expressed sequence AI314180	protein-coding	-0.364543953413103	-0.495534825621866	-0.499344328048031	-0.502279812768127	-0.506422556483846	-0.494675377790124	0.180976420530439	-0.194685606446903	2.61787875856212	0.309035441666141	1
Merged-chr5-107437907-4	chr5	107437843	107438043	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001255991)	promoter-TSS (NM_001255991)	-54.0	NM_001255991	100503185.0	Mm.366650	NM_001255991	ENSMUSG00000111375	Btbd8	EG627196|Gm16115	BTB (POZ) domain containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-27289029-4	chr3	27288968	27289168	+	907.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28009.0	NM_009425	22035.0	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32847329-4	chr2	32847223	32847423	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009295)	promoter-TSS (NM_009295)	-86.0	NM_001113569	20910.0	Mm.278865	NM_009295	ENSMUSG00000026797	Stxbp1	AI317162|AI326233|MMS10-G|Ms10g|Munc-18a|Munc18-1|N-sec1|Rb-sec1|Sxtbp1|Unc18-1|Unc18h|nsec1	syntaxin binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-121320670-4	chr9	121320565	121320765	+	995.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152160, intron 1 of 17)	intron (NR_152160, intron 1 of 17)	23163.0	NR_152160	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-95298316-2	chr11	95298216	95298416	+	811.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_177619, intron 3 of 12)	intron (NM_177619, intron 3 of 12)	11930.0	NM_001195004	217127.0	Mm.90213	NM_177619	ENSMUSG00000038909	Kat7	Hbo1|Hboa|Myst2	K(lysine) acetyltransferase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4622640-1	chr16	4622540	4622740	+	609.0	f1_balb.idr	intron (NM_025571, intron 1 of 4)	B2_Mm2|SINE|B2	2306.0	NM_025571	66449.0	Mm.354760	NM_025571	ENSMUSG00000014301	Pam16	2010110I09Rik|AV006767|CGI-136|Magmas|Tim16|Timm16	presequence translocase-asssociated motor 16 homolog (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-21850478-3	chr10	21850379	21850579	+	775.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31705.0	NM_001161845	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	1.40789880846905	2.27860580860747	2.37810792712682	1.05347144673091	1.57246615442844	1.92858059355305	2.30991667313842	1.05710143748342	-0.27290690122444	0.814203720465873	0.998431161219273
Merged-chr11-120236952-2	chr11	120236852	120237052	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001347621, exon 2 of 28)	5' UTR (NM_001347621, exon 2 of 28)	4005.0	NM_198423	268515.0	Mm.309498	NM_198423	ENSMUSG00000039741	Bahcc1	B930044J06|BC060615	BAH domain and coiled-coil containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-123353423-1	chr3	123353323	123353523	+	706.0	f1_balb.idr	exon (NM_027135, exon 16 of 23)	exon (NM_027135, exon 16 of 23)	32567.0	NM_201638	210529.0	Mm.260039	NM_201638	ENSMUSG00000028114	Mettl14	G430022H21Rik|mKIAA1627	methyltransferase like 14	protein-coding	2.39925615430142	1.27756434687909	3.9449077932742	1.17459455343182	1.83642720349591	3.28203493075503	3.841083538438	1.49156964281669	0.386063003754621	0.824487335854937	0.998431161219273
Merged-chr8-25012611-1	chr8	25012511	25012711	+	555.0	f0_balb.idr	intron (NM_001270996, intron 1 of 21)	intron (NM_001270996, intron 1 of 21)	4311.0	NM_001270996	11502.0	Mm.28908	NM_007404	ENSMUSG00000031555	Adam9	AU020942|MDC9|Mltng|mKIAA0021	a disintegrin and metallopeptidase domain 9 (meltrin gamma)	protein-coding	1.11051933081372	0.732227338166836	1.44244532634005	0.712802643595599	1.48956517789176	1.27238165971003	1.08379672343912	0.89634725881232	0.710856862949523	0.618888968599537	0.978231579824862
Merged-chr19-55236235-4	chr19	55236124	55236324	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081076, intron 2 of 20)	intron (NM_001081076, intron 2 of 20)	5012.0	NM_001081076	73707.0	Mm.489987	NM_001081076	ENSMUSG00000055523	Gucy2g	2410077I05Rik|GC-G	guanylate cyclase 2g	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-56972366-4	chr1	56972278	56972478	+	881.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_024325, exon 1 of 1)	non-coding (NR_024325, exon 1 of 1)	909.0	NR_024326	329160.0	Mm.419039	NR_024325	ENSMUSG00000087022	9130024F11Rik	B530002L08|EG329160	RIKEN cDNA 9130024F11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117471414-4	chr8	117471331	117471531	+	847.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12166.0	NR_106046	102465653.0		NR_106046	ENSMUSG00000098483	Mir7078	Gm27386|mmu-mir-7078	microRNA 7078	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-20120854-4	chr13	20120818	20121018	+	906.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	30411.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	3.1001748725679	3.04202043224142	3.97365235261329	3.18236192722049	2.56255472274324	3.06652269789276	4.92390726096704	3.94250749401822	0.800577569885366	0.215301496371691	0.705944860566832
Merged-chr16-75593412-2	chr16	75593312	75593512	+	843.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198302, intron 1 of 4)	intron (NM_198302, intron 1 of 4)	521.0	NM_198302	224344.0	Mm.273214	NM_198302	ENSMUSG00000032940	Rbm11	A330018F01	RNA binding motif protein 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-45639139-1	chr17	45639039	45639239	+	571.0	f1_balb.idr	exon (NM_001013767, exon 10 of 22)	exon (NM_001013767, exon 10 of 22)	20170.0	NM_001013767	268958.0	Mm.426026	NM_001013767	ENSMUSG00000058626	Capn11	-	calpain 11	protein-coding	-0.246804625911681	-0.231617880112822	-0.236583021038403	0.198549817605708	-0.0939596417755452	-0.230499976121782	-0.235487093282944	0.587385978636312	1.40853798419175	0.556475636966571	1
Merged-chr1-128103195-4	chr1	128103103	128103303	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027678)	promoter-TSS (NM_027678)	-103.0	NM_181750	226412.0	Mm.221041	NM_181750	ENSMUSG00000056211	R3hdm1	R3hdm	R3H domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-170936472-3	chr1	170936362	170936562	+	940.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8879.0	NM_001160215	98752.0	Mm.1850	NM_145141	ENSMUSG00000038421	Fcrla	BB219290|FCRL|FCRL1|FREB|Fcrlm1|Fcrx|Freb1|mFREB|mFcrX	Fc receptor-like A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-25460298-4	chr14	25460207	25460407	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	CpG	1122.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-52900537-2	chr2	52900437	52900637	+	611.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	42669.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45709385-5	chr7	45709351	45709551	+	811.210022	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_203280)	TTS (NM_203280)	4204.0	NM_016974	13170.0	Mm.24222	NM_016974	ENSMUSG00000059824	Dbp	-	D site albumin promoter binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-66512558-4	chr9	66512479	66512679	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175206, intron 1 of 1)	intron (NM_175206, intron 1 of 1)	2014.0	NM_175206	74165.0	Mm.297998	NM_175206	ENSMUSG00000050503	Fbxl22	1110004B15Rik	F-box and leucine-rich repeat protein 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-88573741-4	chr1	88573650	88573850	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10B|LTR|ERVL	22233.0	NR_037971	100503197.0	Mm.99352	NR_037971	ENSMUSG00000100798	Gm19589	-	predicted gene, 19589	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-128748351-1	chr1	128748251	128748451	+	592.0	f1_balb.idr	Intergenic	Intergenic	-156052.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	0.0124582385125397	0.0303431496488551	0.024497910690241	0.45524062268256	0.826067563898515	0.0316590055592147	0.0257882372243524	0.461252487653673	1.7266555619823	0.438010895143759	1
Merged-chr10-68844844-4	chr10	68844758	68844958	+	936.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	121112.0	NM_177794	327766.0	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-35223653-4	chr4	35223563	35223763	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081343, intron 1 of 10)	intron (NM_001081343, intron 1 of 10)	2217.0	NM_001081343	73205.0	Mm.331544	NM_001081343	ENSMUSG00000028300	3110043O21Rik	AI840585|C9orf72	RIKEN cDNA 3110043O21 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-145859507-4	chr2	145859394	145859594	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028724, intron 8 of 12)	intron (NM_028724, intron 8 of 12)	-43747.0	NM_026425	67877.0	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	4.16863587543753	3.43998323364678	2.06804332075961	3.7097646014301	3.98922258510598	3.46589043593107	3.61966871805779	4.2206805290082	0.441815474802609	0.455494012302399	0.919264728457769
Merged-chr13-112417174-2	chr13	112417074	112417274	+	893.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46896.0	NM_010560	16195.0	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-63914260-4	chr7	63914137	63914337	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021366, intron 1 of 1)	intron (NM_021366, intron 1 of 1)	-2620.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	5.43338129944234	6.17265699451299	5.78331384927753	5.20341356523356	5.06460196299332	4.56036750744357	5.30611308524724	5.28786726133213	-0.688152592552809	0.0286804950180201	0.229933051443714
Merged-chr7-110060960-1	chr7	110060860	110061060	+	1000.0	f0_balb.idr	promoter-TSS (NM_009281)	promoter-TSS (NM_009281)	-742.0	NM_009281	20841.0	Mm.10815	NM_009281	ENSMUSG00000061079	Zfp143	AA959806|AU015869|D7Ertd805e|KRAB14|SBF|Staf|Zfp79|Zfp80-rs1|Znf143|pHZ-1	zinc finger protein 143	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55089377-4	chr14	55089251	55089451	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039198, intron 1 of 9)	intron (NM_001039198, intron 1 of 9)	2697.0	NM_001039198	239102.0	Mm.441113	NM_001039198	ENSMUSG00000040721	Zfhx2	ZFH-5	zinc finger homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-107731088-1	chr4	107730988	107731188	+	837.0	f0_balb.idr	Intergenic	Intergenic	-46926.0	NM_019872	56296.0	Mm.141324	NM_019872	ENSMUSG00000028610	Dmrtb1	Dmrt6|Prp13	DMRT-like family B with proline-rich C-terminal, 1	protein-coding	0.127335562196079	0.145039970714147	0.139239081447187	0.434168458345473	0.60297900810826	0.14634778425148	0.811412166119849	0.438763620059661	2.41438984687258	0.239467688643695	1
Merged-chr8-11452211-4	chr8	11452110	11452310	+	998.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25719.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100372068-4	chr7	100371968	100372168	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028292)	promoter-TSS (NM_028292)	-165.0	NM_001017985	277939.0	Mm.276374	NM_001017985	ENSMUSG00000047248	C2cd3	AU020772	C2 calcium-dependent domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-81109524-2	chr16	81109424	81109624	+	763.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	-91173.0	NM_001113208	17968.0	Mm.433941	NM_010954	ENSMUSG00000022762	Ncam2	Ncam-2|Ocam|RNCAM	neural cell adhesion molecule 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-61946905-4	chr9	61946824	61947024	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024245)	promoter-TSS (NM_024245)	-125.0	NM_024245	71819.0	Mm.259374	NM_024245	ENSMUSG00000032254	Kif23	3110001D19Rik|C87313|CHO1|Knsl5|MKLP-1|MKLP1	kinesin family member 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-146093561-3	chr3	146093531	146093731	+	946.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172864, intron 6 of 22)	intron (NM_172864, intron 6 of 22)	14405.0	NM_172864	242253.0	Mm.235040	NM_172864	ENSMUSG00000043020	Wdr63	4931433A13Rik|IC140|Ida7	WD repeat domain 63	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-67384786-4	chr17	67384685	67384885	+	982.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-30294.0	NM_001357625	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-89740419-4	chr13	89740347	89740547	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081249, intron 1 of 14)	intron (NM_001081249, intron 1 of 14)	2065.0	NM_001081249	13003.0	Mm.158700	NM_019389	ENSMUSG00000021614	Vcan	5430420N07Rik|9430051N09|Cspg2|DPEAAE|NG2|PG-M|PG-M(V0)|PG-M(V1)|hdf	versican	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3686670-4	chr12	3686548	3686748	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162465, intron 8 of 17)	intron (NM_001162465, intron 8 of 17)	113664.0	NM_007886	13528.0	Mm.286202	NM_007886	ENSMUSG00000071454	Dtnb	-	dystrobrevin, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-17741730-4	chr12	17741649	17741849	+	995.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016677, intron 1 of 3)	intron (NM_016677, intron 1 of 3)	50940.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	4.16442756709671	4.27154809718235	3.6631394679506	4.63448633701053	3.40102163639429	3.89937389908437	3.69191837021307	2.82661672381874	-1.02255821372765	0.0402094595178847	0.286009520500555
Merged-chr6-145304703-3	chr6	145304588	145304788	+	860.288879	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54136.0	NR_045598	100039495.0	Mm.121014	NR_045598	ENSMUSG00000086013	Gm15706	-	predicted gene 15706	ncRNA	3.26813941917548	2.32349993354646	2.24142632776501	3.37726147628598	3.29451089080765	2.92650239466337	1.55290905210829	3.32959325017444	0.0581149320239373	0.941842825760248	0.998431161219273
Merged-chr3-126598140-3	chr3	126598041	126598241	+	826.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025438, intron 1 of 18)	intron (NM_001025438, intron 1 of 18)	1190.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	2.23184015803236	2.05711800310888	2.58939494218828	1.79483469216543	1.57320963968271	1.27772627066746	2.0035725556548	2.27537670907567	-0.927533880427447	0.347693390710551	0.847729374170411
Merged-chr13-47173382-1	chr13	47173282	47173482	+	549.0	f0_balb.idr	intron (NM_146042, intron 1 of 7)	L1MC3|LINE|L1	-20621.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-69905284-2	chr8	69905200	69905400	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2742.0	NM_023312	67184.0	Mm.21162	NM_023312	ENSMUSG00000036199	Ndufa13	2700054G14Rik|AU022060|CDA016|CGI-39|GRIM-19|Grim19	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 13	protein-coding	3.21662366120205	3.43499429922924	4.19334962363852	2.79852891692736	2.04380903558613	3.46032858586801	3.66617230808105	3.55652643340787	-0.307162009957092	0.63702108462519	0.982417279970648
Merged-chr2-128943917-5	chr2	128943812	128944012	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_020594, exon 1 of 9)	exon (NM_020594, exon 1 of 9)	108.0	NM_020594	57432.0	Mm.11675	NM_020594	ENSMUSG00000027387	Zc3h8	AU020882|E130108N08Rik|Fliz1|Zc3hdc8	zinc finger CCCH type containing 8	protein-coding	6.1209647323126	5.88413290092596	6.25878542775258	5.7258590914422	6.48844313918335	5.6059616088958	6.91109633132721	5.52767984257414	0.269638753492931	0.368670823401901	0.862916999449085
Merged-chr9-65535390-4	chr9	65535283	65535483	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44704.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-183264279-4	chr1	183264228	183264428	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1H2|LTR|ERVL-MaLR	-32732.0	NM_181732	108909.0	Mm.290502	NM_145626	ENSMUSG00000042901	Aida	2610208M17Rik|BC004835	axin interactor, dorsalization associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-62066927-2	chr14	62066827	62067027	+	780.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	226052.0	NM_173419	239133.0	Mm.127330	NM_173419	ENSMUSG00000048281	Dleu7	BC038059	deleted in lymphocytic leukemia, 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-83219965-2	chr10	83219865	83220065	+	770.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	117852.0	NM_177388	338365.0	Mm.67073	NM_177388	ENSMUSG00000034591	Slc41a2	A230035L05Rik|SLC41A1-L1	solute carrier family 41, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-26485894-4	chr2	26485779	26485979	+	926.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008714, intron 2 of 33)	intron (NM_008714, intron 2 of 33)	-15760.0	NR_105962	102465602.0		NR_105962	ENSMUSG00000098548	Mir6996	Gm27531|mmu-mir-6996	microRNA 6996	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19179331-3	chr7	19179218	19179418	+	861.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001347582, exon 2 of 22)	exon (NM_001347582, exon 2 of 22)	-1852.0	NM_001162996	72205.0	Mm.154121	NM_028153	ENSMUSG00000040811	Eml2	1600029N02Rik|EMAP-2	echinoderm microtubule associated protein like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-129995299-3	chr5	129995282	129995482	+	909.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357025, intron 8 of 10)	intron (NM_001357025, intron 8 of 10)	7667.0	NM_010368	110006.0	Mm.3317	NM_010368	ENSMUSG00000025534	Gusb	AI747421|Gur|Gus|Gus-r|Gus-s|Gus-t|Gus-u|Gut|asd|g	glucuronidase, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89873069-2	chr3	89872969	89873169	+	821.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010559, intron 9 of 9)	ORR1C2|LTR|ERVL-MaLR	40127.0	NM_001310676	16194.0	Mm.2856	NM_010559	ENSMUSG00000027947	Il6ra	CD126|IL-6R|IL-6R-alpha|IL-6RA|Il6r	interleukin 6 receptor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-34479268-3	chr6	34479136	34479336	+	655.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007563, intron 1 of 2)	intron (NM_007563, intron 1 of 2)	2880.0	NM_007563	12183.0	Mm.282863	NM_007563	ENSMUSG00000038871	Bpgm	AI323730|AL022789|C86192	2,3-bisphosphoglycerate mutase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72553656-3	chr6	72553549	72553749	+	729.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271395, intron 1 of 9)	intron (NM_001271395, intron 1 of 9)	4002.0	NM_001271395	12332.0	Mm.18626	NM_007599	ENSMUSG00000056737	Capg	gCap39|mbh1	capping protein (actin filament), gelsolin-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-84101822-4	chr17	84101704	84101904	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23144.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-8873958-2	chr13	8873858	8874058	+	606.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2222.0	NM_001039388	207615.0	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6244452-2	chr19	6244352	6244552	+	913.666626	f1_balb.idr|f1_c57bl6.idr	exon (NM_194348, exon 2 of 40)	exon (NM_194348, exon 2 of 40)	2784.0	NM_194348	329015.0	Mm.277384	NM_194348	ENSMUSG00000024773	Atg2a	1810013C15Rik|A830054M12|BC023754|mKIAA0404	autophagy related 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-32895606-1	chr12	32895506	32895706	+	784.0	f1_c57bl6.idr	Intergenic	Intergenic	58183.0	NR_044986	74076.0	Mm.50114	NR_044986	ENSMUSG00000097494	4933406C10Rik	-	RIKEN cDNA 4933406C10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-108904079-4	chr3	108903956	108904156	+	929.537476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001356292, exon 7 of 7)	exon (NM_001356292, exon 7 of 7)	7673.0	NM_025845	66921.0	Mm.51049	NM_025845	ENSMUSG00000027881	Prpf38b	1110021E09Rik|AU018955	PRP38 pre-mRNA processing factor 38 (yeast) domain containing B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4839810-4	chr16	4839707	4839907	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030192, intron 1 of 15)	MIRb|SINE|MIR	4391.0	NM_030192	78809.0	Mm.325551	NM_030192	ENSMUSG00000022518	4930562C15Rik	-	RIKEN cDNA 4930562C15 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52156689-2	chr13	52156589	52156789	+	657.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	59948.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-5302582-4	chr15	5302468	5302668	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58381.0	NM_008965	19219.0	Mm.18509	NM_008965	ENSMUSG00000039942	Ptger4	EP4|Ptgerep4	prostaglandin E receptor 4 (subtype EP4)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-102517195-4	chr15	102517072	102517272	+	985.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009582)	promoter-TSS (NM_009582)	-168.0	NM_009582	26404.0	Mm.172897	NM_009582	ENSMUSG00000023050	Map3k12	DLK|MUK|Zpk	mitogen-activated protein kinase kinase kinase 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-7337304-4	chr9	7337188	7337388	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7109.0	NM_001320077	17381.0	Mm.2055	NM_008605	ENSMUSG00000049723	Mmp12	AV378681|MME|Mmel	matrix metallopeptidase 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-86887843-1	chr5	86887743	86887943	+	625.0	f0_balb.idr	Intergenic	L1_Mur3|LINE|L1	19094.0	NM_153598	100727.0	Mm.281844	NM_153598	ENSMUSG00000029260	Ugt2b34	AI788959	UDP glucuronosyltransferase 2 family, polypeptide B34	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-100036551-2	chr15	100036451	100036651	+	573.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-2113.0	NM_001159361	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-52256139-2	chr14	52256039	52256239	+	562.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-18567.0	NM_201637	67772.0	Mm.289934	NM_201637	ENSMUSG00000053754	Chd8	5830451P18Rik|AU015341|Duplin|HELSNF1|mKIAA1564	chromodomain helicase DNA binding protein 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-5162198-4	chr18	5162124	5162324	+	970.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_153824)	TTS (NR_153824)	3507.0	NR_153824	102637682.0	Mm.451914	NR_153824		Gm26682	Gm38715	predicted gene, 26682	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-117413626-3	chr2	117413538	117413738	+	725.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70761.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-11772478-2	chr2	11772378	11772578	+	955.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001348235, intron 1 of 20)	intron (NM_001348235, intron 1 of 20)	5107.0	NM_001348234	50755.0	Mm.24088	NM_015792	ENSMUSG00000058594	Fbxo18	AU015756|Fbh1|Fbx18	F-box protein 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-81333514-2	chr7	81333414	81333614	+	677.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_008803, exon 22 of 22)	exon (NM_008803, exon 22 of 22)	11720.0	NM_009092	20068.0	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-14115415-3	chr13	14115309	14115509	+	906.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194262, intron 2 of 23)	RMER16|LTR|ERVK	51625.0	NM_198122	94246.0	Mm.439784	NM_194262	ENSMUSG00000039219	Arid4b	BCAA|BRCAA1|RBBP1L1|Rbp1l1|SAP180	AT rich interactive domain 4B (RBP1-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-19673171-4	chr4	19673054	19673254	+	931.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_074089, intron 4 of 23)	intron (NR_074089, intron 4 of 23)	35850.0	NM_177327	107568.0	Mm.78312	NM_177327	ENSMUSG00000041058	Wwp1	8030445B08Rik|AIP5|SDRP1|Tiul1	WW domain containing E3 ubiquitin protein ligase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-73024657-4	chr11	73024552	73024752	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018883, intron 1 of 15)	intron (NM_018883, intron 1 of 15)	5644.0	NM_018883	55984.0	Mm.9998	NM_018883	ENSMUSG00000020785	Camkk1	AI846603|CaMKKalpha|Camkk	calcium/calmodulin-dependent protein kinase kinase 1, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-32610983-2	chr16	32610883	32611083	+	867.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357298, intron 1 of 18)	intron (NM_001357298, intron 1 of 18)	1861.0	NM_001357298	22042.0	Mm.28683	NM_011638	ENSMUSG00000022797	Tfrc	2610028K12Rik|CD71|E430033M20Rik|Mtvr1|TFR|TFR1|TR|Trfr|p90	transferrin receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-145198583-2	chr4	145198483	145198683	+	950.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3578.0	NM_001276465	230895.0	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30794831-4	chr2	30794724	30794924	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_198000)	TTS (NM_198000)	6913.0	NM_198000	73598.0	Mm.34166	NM_198000	ENSMUSG00000044320	1700001O22Rik	1700113K14Rik|4930549G18Rik	RIKEN cDNA 1700001O22 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-9879303-1	chr2	9879203	9879403	+	540.0	f1_balb.idr	promoter-TSS (NM_008091)	promoter-TSS (NM_008091)	-703.0	NM_001355112	14462.0	Mm.313866	NM_008091	ENSMUSG00000015619	Gata3	Gata-3|jal	GATA binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-40241598-4	chr9	40241501	40241701	+	767.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27615.0	NM_001083917	235281.0	Mm.290083	NM_153522	ENSMUSG00000049281	Scn3b	1110001K16Rik|4833414B02Rik|Scnb3	sodium channel, voltage-gated, type III, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-114276156-4	chr7	114276055	114276255	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011965)	promoter-TSS (NM_011965)	-39.0	NM_011965	26440.0	Mm.121265	NM_011965	ENSMUSG00000030751	Psma1	C2|HC2|Pros-30|alpha-type	proteasome (prosome, macropain) subunit, alpha type 1	protein-coding	4.61963366570523	4.74483931438496	4.23417661743415	4.52735983938033	4.30361322420226	4.4047611774547	3.9975402409526	4.45783729319867	-0.310600612211193	0.417087155287546	0.897222495742637
Merged-chr17-8164126-3	chr17	8164035	8164235	+	812.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1383.0	NM_001197046	75296.0	Mm.227250	NM_201230	ENSMUSG00000069135	Fgfr1op	4930553O10Rik|FOP	Fgfr1 oncogene partner	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120340195-2	chr11	120340095	120340295	+	686.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11B|LTR|ERVK	7218.0	NR_105900	102465564.0		NR_105900	ENSMUSG00000098955	Mir6935	Gm27344|mmu-mir-6935	microRNA 6935	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124094949-2	chr5	124094849	124095049	+	670.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019875, intron 1 of 11)	intron (NM_019875, intron 1 of 11)	849.0	NM_019875	56325.0	Mm.254839	NM_019875	ENSMUSG00000029408	Abcb9	TAPL|mKIAA1520	ATP-binding cassette, sub-family B (MDR/TAP), member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-30405965-4	chr14	30405876	30406076	+	962.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028981, intron 1 of 46)	intron (NM_028981, intron 1 of 46)	-52060.0	NR_131095	77710.0	Mm.410773	NR_131095		4831407H17Rik	-	RIKEN cDNA 4831407H17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45011996-1	chr7	45011896	45012096	+	712.0	f1_balb.idr	TTS (NR_106021)	TTS (NR_106021)	491.0	NR_106021	102466218.0		NR_106021	ENSMUSG00000098839	Mir7054	Gm27557|mmu-mir-7054	microRNA 7054	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4941365-2	chr16	4941265	4941465	+	648.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_025839)	TTS (NM_025839)	-1780.0	NR_037666	100503704.0	Mm.480572	NR_037666	ENSMUSG00000097397	Gm16861	-	predicted gene, 16861	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-127780492-4	chr3	127780392	127780592	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027808)	promoter-TSS (NM_027808)	35.0	NM_027808	71481.0	Mm.158704	NM_027808	ENSMUSG00000028028	Alpk1	8430410J10Rik|LAK	alpha-kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-45523071-3	chr4	45522915	45523115	+	820.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033306, intron 1 of 5)	MER58A|DNA|hAT-Charlie	7813.0	NM_001033306	230126.0	Mm.251716	NM_001033306	ENSMUSG00000044813	Shb	BC028832	src homology 2 domain-containing transforming protein B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-74454849-4	chr17	74454757	74454957	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033367, intron 1 of 8)	intron (NM_001033367, intron 1 of 8)	4251.0	NM_001033367	268973.0	Mm.311884	NM_001033367	ENSMUSG00000039193	Nlrc4	9530011P19Rik|CLAN|CLAN1|CLANA|CLANB|CLANC|CLAND|Card12|IPAF	NLR family, CARD domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-21715696-3	chr13	21715590	21715790	+	857.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178182)	promoter-TSS (NM_178182)	453.0	NM_178199	319185.0		NM_178199	ENSMUSG00000094338	Hist1h2bl	H2b-291a	histone cluster 1, H2bl	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-83399941-3	chr7	83399845	83400045	+	758.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-184986.0	NM_177695	233424.0	Mm.486619	NM_177695	ENSMUSG00000038540	Tmc3	9030203A06	transmembrane channel-like gene family 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-81539414-2	chr18	81539314	81539514	+	581.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	452666.0	NR_039589	100628596.0		NR_039589	ENSMUSG00000093036	Mir5127	mmu-mir-5127|mu-mir-5127	microRNA 5127	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-125470132-3	chr7	125470035	125470235	+	843.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360659, intron 5 of 7)	intron (NM_001360659, intron 5 of 7)	21407.0	NM_001360659	67711.0	Mm.4467	NM_026330	ENSMUSG00000030750	Nsmce1	2510027N19Rik	NSE1 homolog, SMC5-SMC6 complex component	protein-coding	3.0058751047568	3.19904354210287	2.90932685245524	2.92138622695375	3.48888248842728	2.35494488526781	2.08714228612536	2.36367827302277	-0.51856528474803	0.477339836665308	0.927980290875356
Merged-chr1-105999198-4	chr1	105999085	105999285	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122675, intron 1 of 12)	intron (NM_001122675, intron 1 of 12)	8779.0	NM_001122675	227449.0	Mm.210188	NM_001122675	ENSMUSG00000038866	Zcchc2	9930114B20Rik|AW212015	zinc finger, CCHC domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-97936559-4	chr4	97936469	97936669	+	889.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010905, intron 2 of 10)	intron (NM_010905, intron 2 of 10)	158943.0	NM_010905	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83733255-4	chr11	83733162	83733362	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19A|LTR|ERVK	-13678.0	NM_183249	66107.0	Mm.902	NM_183249	ENSMUSG00000051748	Wfdc21	1100001G20Rik|Wdnm1-like	WAP four-disulfide core domain 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-33513439-3	chr4	33513265	33513465	+	866.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	75284.0	NR_106198	102465904.0		NR_106198	ENSMUSG00000098310	Mir8118	Gm27954|mmu-mir-8118	microRNA 8118	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-51478221-2	chr10	51478121	51478321	+	835.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2391.0	NM_008147	14727.0	Mm.439661	NM_008147	ENSMUSG00000112023	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-151575351-1	chr2	151575251	151575451	+	554.0	f1_c57bl6.idr	intron (NM_145535, intron 1 of 8)	intron (NM_145535, intron 1 of 8)	2728.0	NM_145535	228765.0	Mm.32068	NM_145535	ENSMUSG00000027456	Sdcbp2	-	syndecan binding protein (syntenin) 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-106829797-4	chr13	106829695	106829895	+	902.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360897, intron 28 of 30)	intron (NM_001360897, intron 28 of 30)	107163.0	NM_001360897	76582.0	Mm.132208	NM_029665	ENSMUSG00000042590	Ipo11	1700081H05Rik|2510001A17Rik|AI314624|AW555235|E330021B14Rik|Ranbp11	importin 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-90224366-2	chr16	90224266	90224466	+	638.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_011434, exon 3 of 5)	exon (NM_011434, exon 3 of 5)	3624.0	NM_011434	20655.0	Mm.276325	NM_011434	ENSMUSG00000022982	Sod1	B430204E11Rik|Cu/Zn-SOD|CuZnSOD|Ipo-1|Ipo1|SODC|Sod-1	superoxide dismutase 1, soluble	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-21878210-1	chr4	21878110	21878310	+	550.0	f1_c57bl6.idr	Intergenic	Intergenic	-1436.0	NM_172687	230027.0	Mm.5662	NM_172687	ENSMUSG00000028247	Coq3	4732433J24|C77934	coenzyme Q3 methyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-92483762-4	chr2	92483662	92483862	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-23244.0	NM_145832	228368.0	Mm.273990	NM_145832	ENSMUSG00000049922	Slc35c1	E430007K15Rik|fuct1	solute carrier family 35, member C1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-75964221-3	chr2	75964106	75964306	+	873.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	13973.0	NM_001081228	620631.0	Mm.389286	NM_001081228	ENSMUSG00000075272	Ttc30a2	-	tetratricopeptide repeat domain 30A2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-64945490-2	chr8	64945390	64945590	+	821.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1695.0	NM_001163747	73067.0	Mm.294445	NM_028427	ENSMUSG00000025521	Tmem192	3110005G23Rik	transmembrane protein 192	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-65986490-3	chr5	65986374	65986574	+	844.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	17811.0	NR_027961	231253.0	Mm.436542	NM_177679	ENSMUSG00000054598	9130230L23Rik	-	RIKEN cDNA 9130230L23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-71850592-4	chr11	71850504	71850704	+	959.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1C|Other|Other	89518.0	NR_045942	73816.0	Mm.390391	NR_045942	ENSMUSG00000085528	4930401O10Rik	-	RIKEN cDNA 4930401O10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-110067147-2	chr7	110067047	110067247	+	634.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009281, intron 1 of 15)	ORR1A2|LTR|ERVL-MaLR	5445.0	NM_009281	20841.0	Mm.10815	NM_009281	ENSMUSG00000061079	Zfp143	AA959806|AU015869|D7Ertd805e|KRAB14|SBF|Staf|Zfp79|Zfp80-rs1|Znf143|pHZ-1	zinc finger protein 143	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72149195-2	chr6	72149095	72149295	+	848.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001035228, intron 6 of 6)	intron (NM_001035228, intron 6 of 6)	-25998.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-182956596-2	chr1	182956496	182956696	+	630.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016928, intron 1 of 3)	intron (NM_016928, intron 1 of 3)	1808.0	NM_016928	53791.0	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-155758983-2	chr4	155758883	155759083	+	629.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_179203, intron 1 of 15)	intron (NM_179203, intron 1 of 15)	2115.0	NM_179203	108888.0	Mm.241152	NM_179203	ENSMUSG00000029036	Atad3a	2400004H09Rik|Atad3|Tob3|mKIAA1273	ATPase family, AAA domain containing 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-20880002-2	chr5	20879902	20880102	+	742.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_172992, intron 1 of 17)	B1_Mus1|SINE|Alu	2122.0	NM_172992	68770.0	Mm.86410	NM_172992	ENSMUSG00000039987	Phtf2	1110054G21Rik|9530062N20Rik|AI447096|C77923	putative homeodomain transcription factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80677328-4	chr10	80677231	80677431	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-1038.0	NM_021462	17347.0	Mm.42126	NM_021462	ENSMUSG00000020190	Mknk2	2010016G11Rik|Gprk7|Mnk2	MAP kinase-interacting serine/threonine kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-118115714-2	chr10	118115614	118115814	+	831.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus1|LINE|L1	-26073.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3909853-2	chr19	3909753	3909953	+	721.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271443, intron 5 of 6)	PB1D9|SINE|Alu	-2720.0	NM_001136091	27060.0	Mm.271689	NM_016921	ENSMUSG00000001750	Tcirg1	ATP6N1C|ATP6a3|Atp6i|OC-116|OPTB1|Stv1|TIRC7|Vph1|oc	T cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 protein A3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-142496794-4	chr3	142496695	142496895	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153564)	promoter-TSS (NM_153564)	-139.0	NM_153564	229898.0	Mm.459245	NM_153564	ENSMUSG00000105504	Gbp5	5330409J06Rik|Gbp5a	guanylate binding protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-37423067-4	chr2	37422957	37423157	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290642)	promoter-TSS (NM_001290642)	-154.0	NM_001290642	319817.0	Mm.288785	NM_001100591	ENSMUSG00000075376	Rc3h2	2900024N03Rik|9430019J22Rik|D930043C02Rik|Mnab|Rnf164	ring finger and CCCH-type zinc finger domains 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-66811457-2	chr10	66811357	66811557	+	589.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	108927.0	NR_138560	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-99394930-2	chr12	99394830	99395030	+	830.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_183186, intron 1 of 5)	intron (NM_183186, intron 1 of 5)	55144.0	NM_183186	71375.0	Mm.341972	NM_183186	ENSMUSG00000033713	Foxn3	5430426H20Rik|AA589593|AW556347|Ches1|Ches1l|HTLFL1	forkhead box N3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-56744562-3	chr9	56744464	56744664	+	658.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181074, intron 2 of 6)	intron (NM_181074, intron 2 of 6)	51746.0	NM_001361118	235402.0	Mm.246605	NM_181074	ENSMUSG00000049556	Lingo1	4930471K13Rik|AV148400|LERN1|LINGO-1|Lrrn6a|UNQ201	leucine rich repeat and Ig domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-34504872-2	chr18	34504772	34504972	+	833.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_146084, intron 1 of 20)	intron (NM_146084, intron 1 of 20)	1951.0	NM_146084	225358.0	Mm.226899	NM_146084	ENSMUSG00000036501	Fam13b	2610024E20Rik|AW060714|AW546153	family with sequence similarity 13, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-3187719-8	chr11	3187572	3187772	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030207, intron 2 of 32)	B1_Mus1|SINE|Alu	5791.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-20371346-2	chr17	20371246	20371446	+	873.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001104569, intron 5 of 5)	ORR1A2-int|LTR|ERVL-MaLR	25921.0	NM_001104569	22312.0	Mm.484664	NM_001104569	ENSMUSG00000056910	Vmn2r107	V2r6|Vmn107	vomeronasal 2, receptor 107	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36059022-4	chr1	36058919	36059119	+	843.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-9381.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100537622-3	chr7	100537486	100537686	+	669.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183270, intron 1 of 1)	intron (NM_183270, intron 1 of 1)	486.0	NM_183270	68185.0	Mm.228995	NM_183270	ENSMUSG00000044881	Coa4	5330414O08Rik|AI115477|AW047259|Chchd8|E2ig2	cytochrome c oxidase assembly factor 4	protein-coding	2.10895299509832	3.19168581960126	1.29355911407389	2.36277842107513	1.8382049822771	3.52148437468161	1.58168458289705	2.37612163180438	0.31567107102868	0.744759904837516	0.998431161219273
Merged-chr11-98963862-3	chr11	98963752	98963952	+	902.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001176528, intron 1 of 7)	intron (NM_001176528, intron 1 of 7)	-1020.0	NM_001361954	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-10424555-4	chr10	10424441	10424641	+	954.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127353, intron 10 of 36)	MLT2B4|LTR|ERVL	47773.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129100994-4	chr2	129100919	129101119	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009086)	promoter-TSS (NM_009086)	23.0	NM_009086	20017.0	Mm.259078	NM_009086	ENSMUSG00000027395	Polr1b	128kDa|D630020H17Rik|RPA116|RPA135|RPA2|Rpo1-2	polymerase (RNA) I polypeptide B	protein-coding	5.0431369293501	4.96099897516051	5.12134391422127	4.88591170390978	5.42153754055022	5.03788870671241	5.4386493903874	4.29904992535683	0.13889284148257	0.683017020892663	0.995882295196263
Merged-chr2-84831249-2	chr2	84831149	84831349	+	771.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4228.0	NM_013899	30059.0	Mm.21826	NM_013899	ENSMUSG00000027076	Timm10	Tim13|Timm13a	translocase of inner mitochondrial membrane 10	protein-coding	0.759506189072985	0.300438945328056	0.293514467826628	0.288159258118521	0.769954733714997	0.666906073012037	0.983979411269435	0.289095647174357	1.72813581278532	0.366441765835789	1
Merged-chr15-85010396-3	chr15	85010336	85010536	+	818.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6705.0	NM_023478	22270.0	Mm.46214	NM_023478	ENSMUSG00000022435	Upk3a	1110017C07Rik|UP3a|UPIII|Upk3	uroplakin 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-73620421-2	chr7	73620321	73620521	+	919.625	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-62026.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-9079344-2	chr15	9079244	9079444	+	774.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001040395, intron 1 of 12)	intron (NM_001040395, intron 1 of 12)	8084.0	NM_001040395	68646.0	Mm.244226	NM_001040395	ENSMUSG00000022253	Nadk2	MNADK|Nadkd1	NAD kinase 2, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126577002-2	chr8	126576902	126577102	+	625.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16434.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-139381693-2	chr4	139381593	139381793	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001160319, intron 1 of 105)	intron (NM_001160319, intron 1 of 105)	1034.0	NM_001160319	69116.0	Mm.271956	NM_001160319	ENSMUSG00000066036	Ubr4	1810009A16Rik|A930005E13Rik|D930005K06Rik|Gm1032|Gm1666|N28143|RBAF600|Zubr1|mKIAA0462|p600	ubiquitin protein ligase E3 component n-recognin 4	protein-coding	1.31748841257492	1.22084848743898	1.31654848004986	1.39131430020959	1.10889604778014	1.22940017880948	0.844160193337439	1.39890330528105	-0.654372016465331	0.6082844252049	0.974576632476413
Merged-chr2-150824772-1	chr2	150824672	150824872	+	544.0	f1_balb.idr	intron (NM_153781, intron 15 of 19)	intron (NM_153781, intron 15 of 19)	17798.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-45358352-3	chr8	45358150	45358350	+	817.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153535, intron 1 of 13)	intron (NM_153535, intron 1 of 13)	24041.0	NM_153535	212326.0	Mm.51259	NM_153535	ENSMUSG00000070044	Fam149a	AW213256|mKIAA4166	family with sequence similarity 149, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-79339195-3	chr15	79339102	79339302	+	860.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7419.0	NM_001304830	17133.0	Mm.86646	NM_010755	ENSMUSG00000042622	Maff	-	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein F (avian)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24644094-4	chr17	24643963	24644163	+	792.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023055, intron 2 of 6)	intron (NM_023055, intron 2 of 6)	894.0	NM_023449	65962.0	Mm.21587	NM_023055	ENSMUSG00000002504	Slc9a3r2	0610011L07Rik|1200011K07Rik|2010007A20Rik|E3karp|NHERF-2|Nherf2|Octs2|Sip-1|Sip1|Sryip1|Tka-1	solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2	protein-coding	1.74883035409022	2.08258888993418	1.18820755397889	1.83911227505098	1.6401298879084	1.82527842350917	2.23616967141853	2.07047062758115	0.59851773321732	0.56112081448172	0.960350977191929
Merged-chr7-99095410-3	chr7	99095363	99095563	+	582.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 4 of 14)	B3|SINE|B2	45681.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	1.92895064493931	1.32279121523331	2.09715697881198	3.25906975542681	2.07068310502574	2.33223099232883	1.95756465019735	2.29812494957235	-0.469404652744492	0.622055440078723	0.979537295922371
Merged-chr5-30848665-5	chr5	30848505	30848705	+	955.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133350, intron 1 of 6)	L1MC4a|LINE|L1	-13202.0	NM_001310516	100732.0	Mm.332295	NM_133350	ENSMUSG00000029166	Mapre3	AI790651|EB2|EB3|EBF3|RP3	microtubule-associated protein, RP/EB family, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-100728750-4	chr15	100728663	100728863	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172451, intron 1 of 11)	intron (NM_172451, intron 1 of 11)	613.0	NM_001161767	207839.0	Mm.22969	NM_172451	ENSMUSG00000037280	Galnt6	4632410F13|AW047994|GalNAc-T6	polypeptide N-acetylgalactosaminyltransferase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-158115993-3	chr2	158115831	158116031	+	778.733337	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009373)	TTS (NM_009373)	-24134.0	NR_040609	72340.0	Mm.443395	NR_040609	ENSMUSG00000100860	2010009K17Rik	-	RIKEN cDNA 2010009K17 gene	ncRNA	2.73632589556574	2.30868172989824	3.13025573240238	2.45938498399672	3.43848950421286	2.49121689743991	2.67515027032065	2.47197580122427	0.285661876180404	0.69711471490856	0.997929106458421
Merged-chr3-35692435-2	chr3	35692335	35692535	+	700.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26272.0	NR_040748	625963.0	Mm.251506	NR_040748	ENSMUSG00000105662	Gm6639	-	predicted gene 6639	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69654690-3	chr11	69654632	69654832	+	930.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009235)	promoter-TSS (NM_009235)	-305.0	NM_009235	20670.0	Mm.347499	NM_009235	ENSMUSG00000041287	Sox15	-	SRY (sex determining region Y)-box 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-49051050-3	chr10	49050960	49051160	+	785.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR17|LTR|ERVK	736877.0	NM_001358866	14806.0	Mm.185993	NM_010349	ENSMUSG00000056073	Grik2	AW124492|C130030K03Rik|GluK2|Glur-6|Glur6|Glurbeta2	glutamate receptor, ionotropic, kainate 2 (beta 2)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100817365-1	chr7	100817265	100817465	+	632.0	f0_balb.idr	intron (NM_178764, intron 4 of 8)	ID_B1|SINE|B4	46048.0	NM_001358914	320100.0	Mm.40336	NM_177073	ENSMUSG00000008318	Relt	E430021K24Rik|Tnfrsf19l	RELT tumor necrosis factor receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-26436564-3	chr12	26436505	26436705	+	965.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19847.0	NM_021384	58185.0	Mm.24045	NM_021384	ENSMUSG00000020641	Rsad2	2510004L01Rik|Vig1|cig5	radical S-adenosyl methionine domain containing 2	protein-coding	2.46476567989852	1.47170266602018	1.39882304353087	1.33833843018745	3.8141515319343	4.60915203929154	4.26659023950607	4.14247423738327	4.30564710574946	5.64956137124338e-08	5.46640623646597e-06
Merged-chr10-21607158-2	chr10	21607050	21607250	+	798.833374	f1_balb.idr|f1_c57bl6.idr	intron (NR_027968, intron 2 of 2)	intron (NR_027968, intron 2 of 2)	14005.0	NR_027968	67692.0	Mm.54306	NM_183266	ENSMUSG00000050844	1700020N01Rik	-	RIKEN cDNA 1700020N01 gene	ncRNA	1.60779254790946	1.45610360379931	2.19120027389927	1.20406825903548	1.62354682550615	0.844568809153867	0.826998133585506	0.811611886923142	-2.05204444692943	0.134401202035274	0.572194741247986
Merged-chr4-34489-1	chr4	34389	34589	+	1000.0	f1_c57bl6.idr	Intergenic	Intergenic	-3137594.0	NM_001167534	100312470.0	Mm.480297	NM_001167534	ENSMUSG00000115072	Vmn1r2	Gm11776	vomeronasal 1 receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-80363171-2	chr18	80363071	80363271	+	740.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001190373, intron 1 of 3)	CpG	1083.0	NM_001190373	240444.0	Mm.279568	NM_001190373	ENSMUSG00000059852	Kcng2	AA591524	potassium voltage-gated channel, subfamily G, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165034817-4	chr2	165034680	165034880	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144892)	promoter-TSS (NM_144892)	-1.0	NM_144892	228869.0	Mm.233080	NM_144892	ENSMUSG00000039804	Ncoa5	CIA	nuclear receptor coactivator 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-8712433-4	chr4	8712332	8712532	+	856.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001277149, intron 1 of 37)	MLT1H|LTR|ERVL-MaLR	22026.0	NM_001277149	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-92496288-2	chr5	92496188	92496388	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007644, intron 1 of 11)	RSINE1|SINE|B4	9369.0	NM_007644	12492.0	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-23415358-3	chr18	23415244	23415444	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010087)	promoter-TSS (NM_010087)	-65.0	NM_010087	13527.0	Mm.94371	NM_010087	ENSMUSG00000024302	Dtna	2210407P21Rik|DTN-A|Dtn|Gm19389|a-DB-1|adbn	dystrobrevin alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-55843239-6	chr7	55843201	55843401	+	855.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011370, intron 1 of 30)	intron (NM_011370, intron 1 of 30)	1230.0	NM_001164661	20430.0	Mm.37249	NM_011370	ENSMUSG00000030447	Cyfip1	E030028J09Rik|P140SRA-1|P140sra1|Shyc|Sra-1|Sra1|l(7)1Rl|l71Rl|l7Rl1|mKIAA0068|pl-1	cytoplasmic FMR1 interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91880048-4	chr16	91879930	91880130	+	837.979187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010587, intron 28 of 38)	MLT1B|LTR|ERVL-MaLR	51600.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-110399068-4	chr11	110398986	110399186	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011943)	promoter-TSS (NM_011943)	-16.0	NM_001356345	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-133457744-2	chr2	133457644	133457844	+	571.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F|LTR|ERVL-MaLR	-94415.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125430992-1	chr6	125430892	125431092	+	551.0	f1_balb.idr	Intergenic	RMER20C_Mm|LTR|ERVK	-50488.0	NM_198604	213522.0	Mm.333396	NM_198604	ENSMUSG00000038167	Plekhg6	BC026778|Gm155	pleckstrin homology domain containing, family G (with RhoGef domain) member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-63778113-2	chr18	63778013	63778213	+	581.916626	f1_balb.idr|f1_c57bl6.idr	exon (NM_001360837, exon 15 of 27)	exon (NM_001360837, exon 15 of 27)	69418.0	NM_001014981	104082.0	Mm.30850	NM_001014981	ENSMUSG00000040560	Wdr7	AI462727|TRAG|mKIAA0541	WD repeat domain 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-170175051-4	chr1	170174947	170175147	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001305045)	promoter-TSS (NM_001305045)	-83.0	NM_001305045	107652.0	Mm.27969	NM_133806	ENSMUSG00000026670	Uap1	AA420407|AA437972|AGX-1|AGX-2|AGX1|AgX|ESTM38|SPAG2	UDP-N-acetylglucosamine pyrophosphorylase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-88708812-4	chr10	88708699	88708899	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22302.0	NM_001037166	237433.0	Mm.478763	NM_001037166		Gm4925	EG237433	predicted gene 4925	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-24367599-4	chr2	24367488	24367688	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355231)	promoter-TSS (NM_001355231)	-87.0	NM_001355231	215632.0	Mm.490434	NM_177611	ENSMUSG00000026979	Psd4	BC046518|EFA6B	pleckstrin and Sec7 domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-41631956-2	chr15	41631856	41632056	+	839.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_152565, intron 2 of 17)	intron (NR_152565, intron 2 of 17)	-157039.0	NM_001358976	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35049767-4	chr17	35049674	35049874	+	994.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033444)	promoter-TSS (NM_033444)	-469.0	NM_033444	114584.0	Mm.29524	NM_033444	ENSMUSG00000007041	Clic1	Clcp|G6	chloride intracellular channel 1	protein-coding	4.2841955906973	3.74602626100498	3.70395064117336	3.67755782556383	4.1922856680304	3.35572389504796	4.2080656980941	4.51014019011123	0.346257225522281	0.464057556754445	0.922222156460881
Merged-chr16-77769842-2	chr16	77769742	77769942	+	615.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	123569.0	NR_029540	723952.0		NR_029540	ENSMUSG00000065472	Mir125b-2	Mirn125b-2|mir-125b-2	microRNA 125b-2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-9604884-2	chr4	9604784	9604984	+	905.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177854, intron 3 of 11)	intron (NM_001177854, intron 3 of 11)	38833.0	NM_001177853	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	0.127101265020236	1.516271168998	0.149536734173577	0.812005645900578	0.129229529110483	0.162453612517242	0.151886642455426	0.537569115539924	-2.93041338580924	0.145449914369227	1
Merged-chr6-24707304-3	chr6	24707204	24707404	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25941.0	NM_028920	74409.0	Mm.87331	NM_028920	ENSMUSG00000029679	Hyal6	4932701A20Rik|Hyal-ps1|Hyalp1	hyaluronoglucosaminidase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-22106404-2	chr16	22106304	22106504	+	838.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183029, intron 2 of 15)	intron (NM_183029, intron 2 of 15)	56895.0	NM_183029	319765.0	Mm.489442	NM_183029	ENSMUSG00000033581	Igf2bp2	C330012H03Rik|IMP-2|Imp2|Neilsen	insulin-like growth factor 2 mRNA binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30051376-4	chr7	30051281	30051481	+	956.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178733)	promoter-TSS (NM_178733)	15.0	NM_011748	243906.0	Mm.347644	NM_011748	ENSMUSG00000053985	Zfp14	4732429I09Rik|Krox-9|Zfp-14|mKIAA1559	zinc finger protein 14	protein-coding	1.91378553554864	1.95944337661646	2.50371526678557	3.38261775703442	2.61219988013784	1.74172416441493	2.25648498409988	2.98521049004267	-0.234053697234886	0.786763081732364	0.998431161219273
Merged-chr4-130841139-4	chr4	130840981	130841181	+	796.354187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48544.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81143290-2	chr10	81143190	81143390	+	866.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010731, intron 1 of 2)	intron (NM_010731, intron 1 of 2)	7019.0	NM_010731	16969.0	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5599396-3	chr19	5599305	5599505	+	931.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2468.0	NM_026616	68209.0	Mm.246200	NM_026616	ENSMUSG00000024925	Rnaseh2c	1500026D16Rik|AYP1	ribonuclease H2, subunit C	protein-coding	0.918300046516067	0.66476646619959	0.655077359784661	0.968408401776037	1.40176925289961	0.873022109095524	1.26257869101114	1.21561163378453	2.06130616601035	0.164863635447668	0.629145641889669
Merged-chr4-152103316-2	chr4	152103216	152103416	+	693.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285999, intron 3 of 20)	intron (NM_001285999, intron 3 of 20)	6597.0	NM_001285999	269608.0	Mm.332102	NM_001004156	ENSMUSG00000039713	Plekhg5	BC023181|Syx	pleckstrin homology domain containing, family G (with RhoGef domain) member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-63822179-4	chr7	63822086	63822286	+	921.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-94671.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67729433-4	chr10	67729351	67729551	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-157492.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-87246558-1	chr17	87246458	87246658	+	723.0	f1_balb.idr	Intergenic	Intergenic	19389.0	NM_176808	193813.0	Mm.30251	NM_139295	ENSMUSG00000024150	Mcfd2	1810021C21Rik|F5f8d|Lman1ip|Sdnsf	multiple coagulation factor deficiency 2	protein-coding	2.09475545842876	2.33936274525919	2.2634105497919	2.73237378861557	2.90001264342887	2.73076242168092	1.95310812380882	2.56262355841942	0.453257476830721	0.568945812351278	0.962718661854691
Merged-chr2-73511206-3	chr2	73511107	73511307	+	958.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153138, intron 1 of 7)	RSINE1|SINE|B4	18280.0	NM_153138	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-13305541-2	chr18	13305441	13305641	+	745.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	298551.0	NM_153087	225192.0	Mm.207073	NM_153087	ENSMUSG00000037346	Hrh4	AXOR35|BG26|GPCR105|GPRv53|H4|H4R|HH4R	histamine receptor H4	protein-coding	-0.909295505863045	-0.895817397635963	-0.903477811800931	-0.377229608855546	-0.908756792193705	-0.893159199153952	-0.902850713633907	-0.599585791608563	-0.896592185565226	0.77398904461321	1
Merged-chr11-117325736-4	chr11	117325660	117325860	+	973.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113486, intron 3 of 11)	intron (NM_001113486, intron 3 of 11)	-5955.0	NM_017380	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-143072588-2	chr7	143072488	143072688	+	770.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_020277, intron 24 of 24)	intron (NM_020277, intron 24 of 24)	3220.0	NM_001115085	56844.0	Mm.139675	NM_020285	ENSMUSG00000045752	Tssc4	AA241958|ESTM671070	tumor-suppressing subchromosomal transferable fragment 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-68364679-3	chr2	68364596	68364796	+	673.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016866, intron 8 of 17)	intron (NM_016866, intron 8 of 17)	107285.0	NM_016866	53416.0	Mm.198414	NM_016866	ENSMUSG00000027030	Stk39	AW227544|AW556857|DCHT|RF005|Rnl5|SPAK	serine/threonine kinase 39	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180607146-2	chr1	180607046	180607246	+	748.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19945.0	NR_105869	102466761.0		NR_105869	ENSMUSG00000098926	Mir6904	Gm27426|mmu-mir-6904	microRNA 6904	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-120025611-2	chr9	120025511	120025711	+	805.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2013.0	NM_011724	22437.0	Mm.10117	NM_011724	ENSMUSG00000079243	Xirp1	AI415219|Cmya1	xin actin-binding repeat containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69934362-4	chr11	69934269	69934469	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1530.0	NM_016875	53422.0	Mm.29286	NM_016875	ENSMUSG00000018554	Ybx2	Msy2	Y box protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-80780094-4	chr11	80779987	80780187	+	902.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177390)	promoter-TSS (NM_177390)	-62.0	NM_177390	338367.0	Mm.151948	NM_177390	ENSMUSG00000035441	Myo1d	9930104H07Rik|AW544947|D11Ertd9e|myosin-1d	myosin ID	protein-coding	2.12782809513668	1.82087088096745	1.42931387259668	1.96108990260158	2.14543595901397	1.83347766243775	1.43748118791195	1.97095180219218	0.0373592183434779	0.970404628091792	0.998431161219273
Merged-chr14-122538218-2	chr14	122538118	122538318	+	542.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144844, intron 1 of 23)	intron (NM_144844, intron 1 of 23)	3890.0	NM_144844	110821.0	Mm.23876	NM_144844	ENSMUSG00000041650	Pcca	C79630	propionyl-Coenzyme A carboxylase, alpha polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-116334177-4	chr7	116334085	116334285	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026533)	promoter-TSS (NM_026533)	5.0	NM_026533	68052.0	Mm.14798	NM_026533	ENSMUSG00000090862	Rps13	2700063M04Rik	ribosomal protein S13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134791381-4	chr6	134791269	134791469	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_151454)	promoter-TSS (NR_151454)	-991.0	NR_151454	105242798.0	Mm.398227	NR_151454		1700055D16Rik	-	RIKEN cDNA 1700055D16 gene	ncRNA	5.09713261678095	4.83717172967647	4.44394594555782	4.73522624833341	4.42752678406287	5.15299878424254	4.03100784853164	4.11199428438994	-0.375100398753559	0.340282482089317	0.840985121439433
Merged-chr5-21211037-2	chr5	21210937	21211137	+	746.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153365, intron 5 of 26)	intron (NR_153365, intron 5 of 26)	24770.0	NM_001359877	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-4738951-2	chr7	4738844	4739044	+	789.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-1183.0	NM_146177	232811.0	Mm.247844	NM_146177	ENSMUSG00000059851	Kmt5c	BC024816|Suv4-20h2|Suv420h2	lysine methyltransferase 5C	protein-coding	-0.477944040739786	0.0486829549052024	-0.469011859840253	-0.472364994292712	-0.477113112020324	-0.463697478090487	0.239557616610278	-0.471778804503391	0.630546922060009	0.817175719180246	1
Merged-chr2-4969298-4	chr2	4969176	4969376	+	995.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB8|LINE|L1	-6846.0	NM_001311208	68527.0	Mm.27791	NM_026754	ENSMUSG00000026668	Ucma	1110017I16Rik|AW121955|Grp	upper zone of growth plate and cartilage matrix associated	protein-coding	4.34821749961042	3.11231271738748	3.12513798904783	3.92674667178737	4.06585541692222	2.43811436894357	4.1224360572978	4.25453911312857	0.202378373772397	0.730546142843395	0.998431161219273
Merged-chr17-83729408-2	chr17	83729308	83729508	+	555.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_054082, intron 3 of 16)	intron (NM_054082, intron 3 of 16)	23245.0	NM_001171052	116871.0	Mm.277668	NM_054082	ENSMUSG00000055817	Mta3	1110002J22Rik|mKIAA1266	metastasis associated 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-12974140-6	chr18	12973976	12974176	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357396)	promoter-TSS (NM_001357396)	-384.0	NM_001357396	16210.0	Mm.8154	NM_008378	ENSMUSG00000024423	Impact	E430016J11Rik	impact, RWD domain protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70871493-3	chr8	70871427	70871627	+	798.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_026964, intron 1 of 4)	intron (NM_026964, intron 1 of 4)	1963.0	NM_026964	234388.0	Mm.295791	NM_026964	ENSMUSG00000007721	Ccdc124	1810023B24Rik	coiled-coil domain containing 124	protein-coding	2.79955597130238	2.44095734337045	3.49649090806836	3.24198607808655	2.32818030927548	4.44567086779389	3.07593226192806	3.07833955026362	0.663991571083209	0.341418067116363	0.842520355668886
Merged-chr3-89317007-4	chr3	89316892	89317092	+	777.670837	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010108, intron 1 of 4)	intron (NM_010108, intron 1 of 4)	5887.0	NM_010108	13638.0	Mm.331159	NM_010108	ENSMUSG00000028039	Efna3	AW494418|EFL-2|Ehk1-L|Epl3|LERK-3	ephrin A3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-67559168-1	chr11	67559068	67559268	+	690.0	f0_balb.idr	intron (NM_008088, intron 1 of 13)	intron (NM_008088, intron 1 of 13)	26170.0	NM_008088	14457.0	Mm.40338	NM_008088	ENSMUSG00000033066	Gas7	AW124766|B230343A10Rik|Gas7-cb	growth arrest specific 7	protein-coding	1.2177273033135	2.05648930395658	1.47363265200823	0.751961367650197	0.733104673482583	1.40354209465688	1.48751323697737	0.754251658632688	-1.13720255990567	0.424280202773903	0.901293602726532
Merged-chr15-51865548-4	chr15	51865435	51865635	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080635)	promoter-TSS (NM_080635)	-74.0	NM_080635	68135.0	Mm.289800	NM_080635	ENSMUSG00000022312	Eif3h	1110008A16Rik|40kD|9430017H16Rik|EIF3-P40|EIF3-gamma|Eif3s3	eukaryotic translation initiation factor 3, subunit H	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-62603748-3	chr11	62603646	62603846	+	882.93335	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028541)	promoter-TSS (NR_028541)	286.0	NR_028550	100217455.0		NR_028550	ENSMUSG00000065734	Snord49a	MBII-243	small nucleolar RNA, C/D box 49A	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-45904573-2	chr1	45904473	45904673	+	741.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21021.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128097351-3	chr10	128097275	128097475	+	970.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054078, intron 2 of 29)	CpG	4592.0	NM_054078	116848.0	Mm.252213	NM_054078	ENSMUSG00000040054	Baz2a	AA415431|C030005G16Rik|C78388|Tip5|Walp3|mKIAA0314	bromodomain adjacent to zinc finger domain, 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-127633434-4	chr3	127633292	127633492	+	748.55835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_009718, exon 1 of 2)	5' UTR (NM_009718, exon 1 of 2)	256.0	NM_009718	11924.0	Mm.42017	NM_009718	ENSMUSG00000027967	Neurog2	Atoh4|Math4A|bHLHa8|ngn-2|ngn2	neurogenin 2	protein-coding	2.88215192487718	2.95920767015484	1.43739391469138	2.95918381084365	2.29682665736318	1.50194364962868	3.68854368976454	3.5260865111598	0.600548656667978	0.501125635277579	0.938226730357636
Merged-chr13-59856556-2	chr13	59856470	59856670	+	764.0	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-33423.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	2.65010744931649	1.32625321489144	1.78417221829383	1.51727939838667	2.22218164635557	2.51070622147298	2.42212030070182	3.39944670730979	1.66592380397559	0.074278551033787	0.411994919146904
Merged-chr4-141111599-1	chr4	141111499	141111699	+	545.0	f1_c57bl6.idr	intron (NM_177867, intron 13 of 14)	ORR1A4|LTR|ERVL-MaLR	23254.0	NM_177867	329972.0	Mm.247201	NM_177867	ENSMUSG00000045004	Spata21	4933414G08	spermatogenesis associated 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-103381300-1	chr3	103381200	103381400	+	747.0	f1_balb.idr	Intergenic	Intergenic	102007.0	NM_053170	94093.0	Mm.195036	NM_053170	ENSMUSG00000033014	Trim33	8030451N04Rik|AI413936|Ecto|Tif1g	tripartite motif-containing 33	protein-coding	0.59846699123841	1.0958721921532	0.327814244744087	0.990046870124603	0.312814907343836	0.337580774245467	0.821857394642459	0.322707120624857	-1.94260562520694	0.300044155402362	1
Merged-chr11-121789779-2	chr11	121789679	121789879	+	729.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40439.0	NM_029049	74675.0	Mm.61213	NM_029049	ENSMUSG00000039198	Ptchd3	4930451E13Rik|4933440L20Rik|RNDEu-3	patched domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-55505014-4	chr16	55504989	55505189	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10358.0	NR_039578	100628589.0		NR_039578	ENSMUSG00000093292	Mir5118	mmu-mir-5118|mu-mir-5118	microRNA 5118	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71214337-2	chr17	71214237	71214437	+	644.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164885, intron 1 of 19)	intron (NM_001164885, intron 1 of 19)	9683.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	0.446656192054775	0.0537101205369991	0.537252456665779	0.412907555605357	0.165357157259267	0.0545956426896176	0.0506662286050362	0.0473507118888859	-3.06566114811932	0.147839312736572	1
Merged-chr1-58424099-4	chr1	58424016	58424216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027853)	promoter-TSS (NR_027853)	-28.0	NM_001042634	12747.0	Mm.1761	NM_009905	ENSMUSG00000026034	Clk1	STY	CDC-like kinase 1	protein-coding	5.7380333015781	5.85835317962844	4.6316572293953	5.76705627375392	5.79390108842751	5.38982300806574	5.75696470270852	5.72612034923307	0.112843688622151	0.705147988099154	0.998431161219273
Merged-chr8-60891537-3	chr8	60891423	60891623	+	713.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151662, intron 1 of 2)	intron (NR_151662, intron 1 of 2)	1130.0	NM_001357270	72612.0	Mm.25263	NM_028299	ENSMUSG00000038005	Hpf1	2700029M09Rik|C230006B22Rik|C4orf27	histone PARylation factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-45971079-1	chr4	45970979	45971179	+	718.0	f1_balb.idr	intron (NM_001290475, intron 1 of 16)	intron (NM_001290475, intron 1 of 16)	-1218.0	NM_146142	100121.0	Mm.275413	NM_146142	ENSMUSG00000035517	Tdrd7	5730495N10Rik|AI447470|PCTAIRE2BP	tudor domain containing 7	protein-coding	0.587324827149501	0.316173895554214	1.30533163775425	0.301134940870716	0.919475549968027	0.318069743940487	0.309588154147098	0.64251792464815	-0.694441360301798	0.707511379818614	1
Merged-chr6-87499999-4	chr6	87499894	87500094	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037727, intron 1 of 10)	intron (NM_001037727, intron 1 of 10)	-3667.0	NM_175476	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-50048320-2	chr11	50048220	50048420	+	603.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290750, intron 1 of 7)	RSINE1|SINE|B4	-21382.0	NR_029769	723845.0		NR_029769	ENSMUSG00000065417	Mir340	Mirn340|mir-340|mmu-mir-340	microRNA 340	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-56172054-3	chr13	56171983	56172183	+	867.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6802.0	NM_145976	212937.0	Mm.116697	NM_145976	ENSMUSG00000049625	Tifab	-	TRAF-interacting protein with forkhead-associated domain, family member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-10654926-2	chr10	10654826	10655026	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M3c|LINE|L1	48981.0	NR_033630	382450.0	Mm.422788	NR_033630	ENSMUSG00000098065	Gm5177	EG382450	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-114772063-4	chr5	114771967	114772167	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077359, intron 1 of 18)	intron (NM_001077359, intron 1 of 18)	1424.0	NM_019834	26431.0	Mm.195632	NM_019834	ENSMUSG00000041890	Git2	1500036H07Rik|5830420E16Rik|6430510B20Rik|9630056M03Rik|B230104M05Rik|CAT2|mKIAA0148	G protein-coupled receptor kinase-interactor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-31294891-2	chr17	31294791	31294991	+	630.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153062)	promoter-TSS (NM_153062)	-592.0	NM_153062	224674.0	Mm.311395	NM_153062	ENSMUSG00000024036	Slc37a1	G3PP	solute carrier family 37 (glycerol-3-phosphate transporter), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120101410-4	chr8	120101304	120101504	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133967)	promoter-TSS (NM_133967)	68.0	NM_133967	102193.0	Mm.240076	NM_133967	ENSMUSG00000031823	Zdhhc7	AL024087|Gramp2	zinc finger, DHHC domain containing 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-7923645-4	chr10	7923552	7923752	+	948.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359534, intron 2 of 6)	intron (NM_001359534, intron 2 of 6)	29413.0	NM_001359534	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-50181159-3	chr17	50181073	50181273	+	888.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181397, intron 1 of 9)	intron (NM_181397, intron 1 of 9)	9324.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97837916-2	chr11	97837726	97837926	+	691.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010688, exon 7 of 7)	3' UTR (NM_010688, exon 7 of 7)	-2954.0	NM_001080935	68127.0	Mm.110270	NM_001080935	ENSMUSG00000050538	B230217C12Rik	AI840637	RIKEN cDNA B230217C12 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-52446123-2	chr14	52446047	52446247	+	718.25	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-4246.0	NM_020514	57271.0	Mm.88824	NM_020514	ENSMUSG00000035626	Olfr1509	MOR244-3|Mor83|Or83	olfactory receptor 1509	protein-coding	0.978355536013472	1.13935204002776	1.4068746022361	2.62267576293669	2.49124729817203	1.14987349212543	3.22363497795192	3.86986554623715	2.47548213105411	0.180818826357174	0.653453095973907
Merged-chr12-85576715-2	chr12	85576615	85576815	+	792.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22390.0	NM_001205052	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-120357018-3	chr14	120356895	120357095	+	741.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360376, intron 2 of 8)	RMER5|LTR|ERV1	50543.0	NM_001360376	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76013353-2	chr15	76013253	76013453	+	736.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_134087, intron 1 of 4)	intron (NM_134087, intron 1 of 4)	983.0	NM_134087	105732.0	Mm.267178	NM_134087	ENSMUSG00000046761	Fam83h	AA409316	family with sequence similarity 83, member H	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-29707750-7	chr11	29707661	29707861	+	796.3095089999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_194051, exon 3 of 9)	exon (NM_194051, exon 3 of 9)	-10802.0	NM_024226	68585.0	Mm.192580	NM_024226	ENSMUSG00000020458	Rtn4	1110020G17Rik|AA407876|AA409940|AA960376|ASY|C130026I10Rik|NOGO|NSP-CL|NgA|Nogo-A|Nogo-B|Nogo-C|mKIAA0886|mKIAA4153	reticulon 4	protein-coding	0.620705026536272	0.0836129657344525	0.74060514733585	0.0736989860696469	0.336672901978976	0.279465118641471	0.0792505669043697	0.0744531827141933	-1.68436364309342	0.41869810796522	1
Merged-chr4-110020518-2	chr4	110020418	110020618	+	599.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42493.0	NM_172296	242620.0	Mm.32825	NM_172296	ENSMUSG00000047143	Dmrta2	Dmrt5	doublesex and mab-3 related transcription factor like family A2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-100500796-4	chr5	100500690	100500890	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172714)	promoter-TSS (NM_172714)	-151.0	NM_001359914	231506.0	Mm.212568	NM_172714	ENSMUSG00000035310	Lin54	AI461788	lin-54 homolog (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116226704-2	chr11	116226604	116226804	+	821.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_025276, intron 18 of 21)	intron (NM_025276, intron 18 of 21)	10702.0	NR_004853	69681.0	Mm.33677	NR_004853	ENSMUSG00000092300	Cdk3-ps	2310050O10Rik|Cdk3	cyclin-dependent kinase 3, pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-79023093-1	chr12	79022993	79023193	+	653.0	f1_c57bl6.idr	Intergenic	Intergenic	-6070.0	NM_181073	211945.0	Mm.478321	NM_181073	ENSMUSG00000060716	Plekhh1	AV308913|C77772|D630024D12Rik|mKIAA1200	pleckstrin homology domain containing, family H (with MyTH4 domain) member 1	protein-coding	3.26970913263151	4.40197862138503	3.54807959970512	2.76974002532448	2.63695531967083	3.77182456008385	1.96005474651658	3.53868504736078	-0.726214604143348	0.289045050976088	0.794651459678379
Merged-chr11-19925234-2	chr11	19925134	19925334	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_033523, intron 1 of 5)	CpG	792.0	NM_033523	114716.0	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-61696058-3	chr10	61695957	61696157	+	960.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001272090, exon 1 of 4)	exon (NM_001272090, exon 1 of 4)	471.0	NR_073587	71767.0	Mm.71514	NM_027912	ENSMUSG00000020087	Tysnd1	1300019N10Rik	trypsin domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-113649565-4	chr11	113649494	113649694	+	962.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013581)	promoter-TSS (NM_013581)	65.0	NM_013581	16834.0	Mm.261620	NM_013581	ENSMUSG00000018661	Cog1	6030445I15|Ldlb|mKIAA1381	component of oligomeric golgi complex 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-50856964-4	chr9	50856867	50857067	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001034085)	promoter-TSS (NM_001034085)	43.0	NM_001286553	73699.0	Mm.7726	NM_028614	ENSMUSG00000032058	Ppp2r1b	2410091N08Rik|AI790395	protein phosphatase 2, regulatory subunit A, beta	protein-coding	3.59484021499412	3.36538513289725	3.11068786094394	4.91458631701413	4.41806888276913	4.52073228451578	4.5318740890193	4.90470141482319	0.835832219950182	0.0901555880603137	0.463712523098447
Merged-chr6-72402051-4	chr6	72401954	72402154	+	975.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-11387.0	NM_016794	22320.0	Mm.1838	NM_016794	ENSMUSG00000050732	Vamp8	AU041171|Edb|endobrevin	vesicle-associated membrane protein 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-30016769-2	chr11	30016669	30016869	+	700.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_146016, intron 2 of 41)	RMER13A1|LTR|ERVK	9264.0	NM_146016	237711.0	Mm.445271	NM_146016	ENSMUSG00000044072	Eml6	2900083P10Rik|C230094A16Rik|EMAP-6	echinoderm microtubule associated protein like 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-17408816-2	chr6	17408716	17408916	+	721.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4B|LINE|L1	-55141.0	NM_008591	17295.0	Mm.86844	NM_008591	ENSMUSG00000009376	Met	AI838057|HGF|HGFR|Par4|c-Met	met proto-oncogene	protein-coding	-0.151591052260365	-0.130940799197888	0.714739633291343	-0.142844897156857	-0.150282248982373	-0.12944136653855	0.729351554324659	-0.141931488452262	0.041083046276385	0.986412301813541	1
Merged-chr13-49362988-2	chr13	49362888	49363088	+	760.325012	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039179, intron 1 of 6)	intron (NM_001039179, intron 1 of 6)	21439.0	NM_001039180	76895.0	Mm.197387	NM_029791	ENSMUSG00000037933	Bicd2	-	BICD cargo adaptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97496193-4	chr6	97496127	97496327	+	816.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	-8407.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0.366777670204393	0.113323781772546	0.965006043486616	0.102484929028681	0.373611455352489	0.315106363068877	0.10855991835589	0.273317693829918	-1.21136608595811	0.527386936690685	1
Merged-chr18-34931476-1	chr18	34931376	34931576	+	1000.0	f0_balb.idr	intron (NM_144866, intron 2 of 10)	CpG	527.0	NM_144866	225363.0	Mm.329353	NM_144866	ENSMUSG00000024360	Etf1	AI463371|D6Ertd109e|ERF|ERF1|SUP45L1|TB3-1	eukaryotic translation termination factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-11691043-3	chr18	11690944	11691144	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081223, intron 4 of 18)	RLTR13B1|LTR|ERVK	33695.0	NM_001081223	225182.0	Mm.154275	NM_175458	ENSMUSG00000041238	Rbbp8	9930104E21Rik|CtIP|RBBP-8|RIM|SAE2	retinoblastoma binding protein 8, endonuclease	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36691455-4	chr1	36691356	36691556	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009942)	promoter-TSS (NM_009942)	-31.0	NM_009942	12859.0	Mm.180182	NM_009942	ENSMUSG00000061518	Cox5b	-	cytochrome c oxidase subunit Vb	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165445122-4	chr2	165445032	165445232	+	925.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054055, intron 3 of 12)	intron (NM_054055, intron 3 of 12)	28065.0	NM_054055	114644.0	Mm.250738	NM_054055	ENSMUSG00000018459	Slc13a3	NaDC-3|NaDC3|SDCT2	solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3	protein-coding	1.97392502169085	2.91275374295938	2.38385543125321	2.49865692956202	1.36922248634304	2.37756451987149	1.21023337634979	1.43351832595201	-1.9703353823569	0.0491077233810602	0.322600509475351
Merged-chr7-25768867-2	chr7	25768767	25768967	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009465, intron 12 of 19)	PB1D10|SINE|Alu	-14108.0	NM_178089	232989.0	Mm.254223	NM_144922	ENSMUSG00000040725	Hnrnpul1	E130317O14Rik|E1B-AP5|E1BAP5|Hnrnpul|Hnrpul1	heterogeneous nuclear ribonucleoprotein U-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-24597141-4	chr4	24596997	24597197	+	954.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149739, intron 22 of 24)	intron (NR_149739, intron 22 of 24)	100646.0	NM_199467	212377.0	Mm.120919	NM_199467	ENSMUSG00000045751	Mms22l	F730047E07Rik|Gm134	MMS22-like, DNA repair protein	protein-coding	1.60996400722771	1.96119115342174	2.33367411289493	2.34832794343403	1.08339790523466	2.23224714077005	1.90763705433134	1.11727306446587	-1.09811595053379	0.323450751860235	0.826280082502291
Merged-chr12-4236515-4	chr12	4236417	4236617	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001204912, exon 2 of 2)	exon (NM_001204912, exon 2 of 2)	2490.0	NM_001204912	69709.0	Mm.250552	NM_001204912	ENSMUSG00000096199	Ptrhd1	2410017P09Rik	peptidyl-tRNA hydrolase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-113338798-2	chr11	113338698	113338898	+	554.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027216, intron 6 of 9)	intron (NM_027216, intron 6 of 9)	-129129.0	NR_040276	319871.0	Mm.383743	NR_040276	ENSMUSG00000085421	4732490B19Rik	-	RIKEN cDNA 4732490B19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-121878474-4	chr14	121878382	121878582	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_131000)	promoter-TSS (NR_131000)	22.0	NR_131000	78312.0	Mm.188743	NR_130999	ENSMUSG00000102112	1810041H14Rik	-	RIKEN cDNA 1810041H14 gene	ncRNA	6.38531415637967	6.20438490761006	6.95528339294283	7.01552586985768	6.43741243574351	6.45605386158019	6.97235976005488	6.71422652634643	-0.0248656814167204	0.912494165132954	0.998431161219273
Merged-chr14-76757641-3	chr14	76757539	76757739	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2492.0	NR_153763	73883.0	Mm.489041	NR_153763		4930431P22Rik	-	RIKEN cDNA 4930431P22 gene	ncRNA	5.09412354216382	4.96146227718458	6.20305877459039	4.47386386009136	2.77194157762274	3.19847143290025	3.6523780611232	2.4543279464467	-2.9228578677091	9.00762143118499e-09	1.11034358148655e-06
Merged-chr11-5261222-1	chr11	5261122	5261322	+	837.0	f0_c57.idr	intron (NM_032396, intron 1 of 8)	CpG	388.0	NM_032396	84035.0	Mm.209989	NM_032396	ENSMUSG00000020393	Kremen1	AV002070|Kremen|Krm1	kringle containing transmembrane protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-136919558-1	chr2	136919458	136919658	+	546.0	f0_balb.idr	intron (NM_001355671, intron 2 of 6)	intron (NM_001355671, intron 2 of 6)	20207.0	NM_001038641	74243.0	Mm.330612	NM_028201	ENSMUSG00000027281	Slx4ip	2210009G21Rik|2410004I22Rik|C85661|Slxip	SLX4 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-78867480-2	chr2	78867380	78867580	+	763.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1567.0	NM_009454	22193.0	Mm.1485	NM_009454	ENSMUSG00000027011	Ube2e3	Ubce4|ubcM2	ubiquitin-conjugating enzyme E2E 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120633831-2	chr8	120633731	120633931	+	794.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001308449, intron 1 of 3)	CpG	551.0	NM_197988	68918.0	Mm.473736	NM_197988	ENSMUSG00000043687	1190005I06Rik	-	RIKEN cDNA 1190005I06 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70215497-2	chr14	70215397	70215597	+	898.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7826.0	NM_011366	20410.0	Mm.5068	NM_011366	ENSMUSG00000022091	Sorbs3	SCAM-1|SH3P3|Sh3d4|vinexin-g	sorbin and SH3 domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-53039247-2	chr19	53039147	53039347	+	741.099976	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133216)	promoter-TSS (NM_133216)	-593.0	NM_133216	170750.0	Mm.99776	NM_133216	ENSMUSG00000025027	Xpnpep1	D230045I08Rik|sAMP	X-prolyl aminopeptidase (aminopeptidase P) 1, soluble	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-93292023-1	chr10	93291923	93292123	+	696.5	f0_balb.idr	intron (NM_001322265, intron 1 of 4)	intron (NM_001322265, intron 1 of 4)	19136.0	NM_001322268	13713.0	Mm.4454	NM_013508	ENSMUSG00000008398	Elk3	D430049E23Rik|Erp|Etrp|Net|Sap-2	ELK3, member of ETS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-42988309-2	chr4	42988209	42988409	+	833.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009503, intron 7 of 16)	B4|SINE|B4	12198.0	NM_009503	269523.0	Mm.245976	NM_009503	ENSMUSG00000028452	Vcp	3110001E05|CDC48|p97|p97/VCP	valosin containing protein	protein-coding	0.644114665727314	1.28738672598264	0.346762263081718	0.338906218513336	0.652193549974867	1.30236456607134	0.348990905125205	0.340285516511188	0.0399130568669885	0.982313816346763	1
Merged-chr3-34076921-2	chr3	34076821	34077021	+	781.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001286972)	TTS (NM_001286972)	4433.0	NM_001026211	67713.0	Mm.274266	NM_026332	ENSMUSG00000027679	Dnajc19	1810055D05Rik|AA959924|Tim14	DnaJ heat shock protein family (Hsp40) member C19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-50752387-4	chr16	50752285	50752485	+	990.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19612.0	NR_028300	68190.0	Mm.139089	NR_028300		Dubr	5330426P16Rik|Dum	Dppa2 upstream binding RNA	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-27553906-2	chr7	27553806	27554006	+	746.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011116)	promoter-TSS (NM_011116)	616.0	NM_175107	66367.0	Mm.29831	NM_175107	ENSMUSG00000049643	2310022A10Rik	-	RIKEN cDNA 2310022A10 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-38905214-2	chr6	38905114	38905314	+	617.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13772.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-121654849-2	chr8	121654749	121654949	+	627.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2916.0	NM_080855	142682.0	Mm.103202	NM_080855	ENSMUSG00000061410	Zcchc14	AA792890|BDG29	zinc finger, CCHC domain containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129618492-2	chr4	129618317	129618517	+	801.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_025455)	TTS (NM_025455)	676.0	NM_198026	230767.0	Mm.441132	NM_198026	ENSMUSG00000040795	Iqcc	BC026978	IQ motif containing C	protein-coding	1.25151509455933	1.29706629007202	1.36812598685487	0.938262455463373	1.26268561127498	1.30755761537697	0.775095651059164	0.941893774090982	-0.584764217704287	0.662268513759019	0.991056031673253
Merged-chr1-4787178-2	chr1	4787078	4787278	+	560.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1452.0	NM_025300	27395.0	Mm.182927	NM_025300	ENSMUSG00000033845	Mrpl15	HSPC145|MRP-L7|Rpml7	mitochondrial ribosomal protein L15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-20860716-4	chr5	20860596	20860796	+	816.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172992, intron 1 of 17)	intron (NM_172992, intron 1 of 17)	21428.0	NM_172992	68770.0	Mm.86410	NM_172992	ENSMUSG00000039987	Phtf2	1110054G21Rik|9530062N20Rik|AI447096|C77923	putative homeodomain transcription factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-87140924-1	chr17	87140824	87141024	+	578.0	f0_balb.idr	Intergenic	Intergenic	33245.0	NM_019654	56468.0	Mm.126885	NM_019654	ENSMUSG00000037104	Socs5	1810018L08Rik|Cish5|mKIAA0671	suppressor of cytokine signaling 5	protein-coding	1.61599396960598	2.93528500978331	2.47276974431081	1.23849923490651	2.76480260657687	1.59857008090691	2.77604065152711	1.89209525777296	0.253800586906603	0.798732283707029	0.998431161219273
Merged-chr5-138262270-4	chr5	138262159	138262359	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_153161, exon 6 of 11)	exon (NM_153161, exon 6 of 11)	-1786.0	NR_045821	69004.0	Mm.439868	NR_045821	ENSMUSG00000085227	6330418K02Rik	-	RIKEN cDNA 6330418K02 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-23228685-2	chr16	23228585	23228785	+	549.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252505, intron 1 of 7)	RMER2|LTR|ERV1	2664.0	NM_001252505	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191182531-4	chr1	191182407	191182607	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007498, intron 1 of 3)	CpG	826.0	NM_007498	11910.0	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-106797594-1	chr6	106797494	106797694	+	564.0	f0_balb.idr	intron (NM_175357, intron 1 of 10)	MER20|DNA|hAT-Charlie	2493.0	NM_021449	58799.0	Mm.290085	NM_021449	ENSMUSG00000005362	Crbn	2610203G15Rik|2900045O07Rik|AF229032|AW108261|piL	cereblon	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70598343-2	chr14	70598243	70598443	+	818.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_194345, intron 1 of 16)	intron (NM_194345, intron 1 of 16)	1492.0	NM_194345	239170.0	Mm.247582	NM_194345	ENSMUSG00000022095	Fam160b2	G430067P06Rik|Rai16	family with sequence similarity 160, member B2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-155100867-4	chr2	155100797	155100997	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040634)	promoter-TSS (NR_040634)	-818.0	NR_040634	100504268.0	Mm.410858	NR_040634	ENSMUSG00000087254	2310005A03Rik	-	RIKEN cDNA 2310005A03 gene	ncRNA	3.34242381855559	4.28776631293195	4.64933374451734	5.25540370057062	4.73568164093808	4.82983080722864	4.93717246920201	5.01356466021737	0.410837873476548	0.331254178507544	0.832042072658796
Merged-chr12-73907872-4	chr12	73907756	73907956	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010431)	promoter-TSS (NM_010431)	-11.0	NM_010431	15251.0	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-24511296-2	chr9	24511196	24511396	+	573.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8156.0	NM_172920	244745.0	Mm.38526	NM_172920	ENSMUSG00000043067	Dpy19l1	1100001I19Rik|6030402K12|AI225861|AW558481	dpy-19-like 1 (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-33147685-4	chr12	33147586	33147786	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015602)	promoter-TSS (NR_015602)	0.0	NM_028139	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-65216405-1	chr18	65216305	65216505	+	660.0	f1_c57bl6.idr	3' UTR (NM_031881, exon 30 of 30)	3' UTR (NM_031881, exon 30 of 30)	-32456.0	NR_029600	387231.0		NR_029600	ENSMUSG00000065402	Mir122	Mir122a|Mirn122a|mir-122|mmu-mir-122	microRNA 122	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19849786-4	chr7	19849647	19849847	+	898.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2256.0	NM_001270489	100502736.0	Mm.445354	NM_001270489	ENSMUSG00000092216	Gm19345	-	predicted gene, 19345	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-84086659-4	chr18	84086569	84086769	+	968.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081300)	promoter-TSS (NM_001081300)	-107.0	NM_001081300	110796.0	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-83012383-2	chr15	83012283	83012483	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028728, intron 3 of 5)	(GGAGA)n|Simple_repeat|Simple_repeat	10755.0	NM_028728	74039.0	Mm.32584	NM_028728	ENSMUSG00000058099	Nfam1	4921501M20Rik|Cnaip	Nfat activating molecule with ITAM motif 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-136551122-2	chr1	136551025	136551225	+	729.650024	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-73776.0	NM_177643	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-119063583-4	chr10	119063502	119063702	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13103.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-5320346-4	chr5	5320256	5320456	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011074, intron 2 of 14)	intron (NM_011074, intron 2 of 14)	-54288.0	NM_001310448	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	4.03583374333707	3.97926766664945	4.55024343581282	4.1327125277007	3.90360286870296	4.7225757254155	4.38715555275035	3.97002985715061	0.112491280606111	0.792327058545037	0.998431161219273
Merged-chr2-128128072-4	chr2	128127974	128128174	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001284410, intron 1 of 3)	CpG-8520	499.0	NM_001284410	12125.0	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-51183730-4	chr3	51183624	51183824	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-40723.0	NM_009834	12457.0	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	4.7099863895653	5.43220154435123	5.61076306181471	5.70649003100577	5.25684820572409	5.14195933571151	4.44888559812333	4.92655715829085	-0.502896806212615	0.133293571060689	0.570764692507331
Merged-chr8-18936896-4	chr8	18936792	18936992	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176951, intron 6 of 6)	(CAAAA)n|Simple_repeat|Simple_repeat	13979.0	NM_001286469	319581.0	Mm.111354	NM_176951	ENSMUSG00000039814	Xkr5	5430438H03Rik|XRG5	X-linked Kx blood group related 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-28621906-4	chr2	28621819	28622019	+	950.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008114)	promoter-TSS (NM_008114)	63.0	NM_008114	14582.0	Mm.373385	NM_008114	ENSMUSG00000026815	Gfi1b	Gfi-1B	growth factor independent 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-54068268-6	chr11	54068172	54068372	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019417, intron 1 of 6)	intron (NM_019417, intron 1 of 6)	745.0	NM_019417	30794.0	Mm.21830	NM_019417	ENSMUSG00000020388	Pdlim4	Ril	PDZ and LIM domain 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-115803626-3	chr6	115803534	115803734	+	811.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025958, intron 14 of 14)	intron (NM_025958, intron 14 of 14)	4469.0	NR_028546	100217451.0	Mm.484708	NR_028546	ENSMUSG00000064563	Snora7a	MBI-141	small nucleolar RNA, H/ACA box 7A	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-23667089-3	chr11	23666985	23667185	+	842.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028304, intron 1 of 17)	intron (NM_028304, intron 1 of 17)	1109.0	NM_028304	74467.0	Mm.29536	NM_028304	ENSMUSG00000020280	Pus10	2810013G11Rik|4933435A13Rik|AU014648|C77560|Ccdc139	pseudouridylate synthase 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127337161-1	chr10	127337061	127337261	+	540.0	f1_c57bl6.idr	intron (NM_010296, intron 5 of 12)	intron (NM_010296, intron 5 of 12)	4418.0	NM_010296	14632.0	Mm.391450	NM_010296	ENSMUSG00000025407	Gli1	AV235269|Zfp-5|Zfp5	GLI-Kruppel family member GLI1	protein-coding	0.291855771812611	0.152786634289443	0.144996603058216	1.23734550827674	0.437851550227665	0.154532346542974	0.146721265447567	0.620261049710141	-1.15944613851766	0.551210321011421	1
Merged-chr6-72825208-2	chr6	72825108	72825308	+	670.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36163.0	NM_009332	21415.0	Mm.440067	NM_009332	ENSMUSG00000055799	Tcf7l1	Tcf-3|Tcf3|bHLHb21	transcription factor 7 like 1 (T cell specific, HMG box)	protein-coding	-0.849540347160918	-0.83791883826935	-0.842874229298225	-0.845379854937529	-0.567718301155892	-0.197178340663439	-0.842158039317344	-0.844942093372508	3.16182143622335	0.281564155371618	1
Merged-chr13-43795090-2	chr13	43794941	43795141	+	871.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009856, intron 2 of 4)	RMER12C|LTR|ERVK	9929.0	NM_001289915	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-16004075-3	chr3	16003970	16004170	+	926.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081687, intron 1 of 3)	intron (NM_001081687, intron 1 of 3)	2262.0	NM_001081687	381484.0	Mm.217376	NM_001081687	ENSMUSG00000078780	Gm5150	-	predicted gene 5150	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-151599056-4	chr1	151598960	151599160	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022018, intron 1 of 13)	intron (NM_022018, intron 1 of 13)	27687.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-34840158-3	chr7	34840038	34840238	+	754.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-27427.0	NM_175140	68947.0	Mm.29380	NM_175140	ENSMUSG00000060402	Chst8	1500011J21Rik|AI426009	carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 8	protein-coding	0.99822102150412	1.13589668513908	1.09206326430973	0.645278654845533	0.897297840893661	0.660246988753146	1.3910877536781	0.803351902304227	0.00953931834780723	0.994923020919142	0.998431161219273
Merged-chr2-153549723-1	chr2	153549623	153549823	+	748.5	f1_c57bl6.idr	Intergenic	Intergenic	-19752.0	NM_001134300	329540.0	Mm.50600	NM_001001986	ENSMUSG00000061411	Nol4l	4931410H15|8430427H17Rik|AI429157|Gm1636	nucleolar protein 4-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-135418042-2	chr3	135417942	135418142	+	821.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025902, intron 1 of 2)	intron (NM_025902, intron 1 of 2)	5391.0	NM_025902	67006.0	Mm.269993	NM_025902	ENSMUSG00000028165	Cisd2	1500009M05Rik|1500026J14Rik|1500031D15Rik|AI848398|B630006A20Rik|Miner1|Naf-1|Noxp70|Zcd2	CDGSH iron sulfur domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114655824-2	chr11	114655724	114655924	+	776.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12719.0	NM_023372	67671.0	Mm.238817	NM_023372	ENSMUSG00000057322	Rpl38	0610025G13Rik|Rbt|Ts|Tss	ribosomal protein L38	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-106223739-1	chr9	106223639	106223839	+	780.0	f1_balb.idr	exon (NM_031178, exon 2 of 2)	exon (NM_031178, exon 2 of 2)	1141.0	NM_031178	81897.0	Mm.44889	NM_031178	ENSMUSG00000045322	Tlr9	-	toll-like receptor 9	protein-coding	0.0986402538797116	0.320921925344109	0.112137137960203	0.425618295625732	0.0998986901922321	0.64095032618256	0.916610586634322	0.10796317497307	1.72294230499714	0.397227800030515	1
Merged-chr8-89041426-2	chr8	89041326	89041526	+	635.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021390, intron 2 of 3)	CpG	2736.0	NM_021390	58198.0	Mm.214361	NM_021390	ENSMUSG00000031665	Sall1	Msal-3	spalt like transcription factor 1	protein-coding	0.880695478955961	1.88400870876541	2.12225705258464	1.14133693476607	0.885277652748912	1.89998210005693	2.14131979764908	1.14675539559104	0.0395336486663787	0.975454504391963	0.998431161219273
Merged-chr16-97463556-1	chr16	97463456	97463656	+	626.166687	f0_balb.idr	promoter-TSS (NM_010846)	promoter-TSS (NM_010846)	-650.0	NR_003520	17857.0	Mm.33996	NM_010846	ENSMUSG00000000386	Mx1	AI893580|Mx|Mx-1	MX dynamin-like GTPase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84814281-2	chr8	84814181	84814381	+	662.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8542.0	NM_201227	23863.0	Mm.304252	NM_201227	ENSMUSG00000053226	Dand5	Cerl-2|Cerl2|Cerr2|Dte|GREM3|coco	DAN domain family member 5, BMP antagonist	protein-coding	-1.8429182434137	-1.8129848525291	-1.82203695700074	-1.54461076807193	-1.84081697472045	-1.81102322372834	-1.81998775896484	-1.82814164409203	-1.43114970378833	0.684630132144154	1
Merged-chr17-24169597-4	chr17	24169497	24169697	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361535)	promoter-TSS (NM_001361535)	81.0	NM_001361532	11984.0	Mm.30155	NM_009729	ENSMUSG00000024121	Atp6v0c	Atp6c|Atp6c2|Atp6l|Atpl|Atpl-rs1|PL16|VATL|Vma3	ATPase, H+ transporting, lysosomal V0 subunit C	protein-coding	5.19157367004836	5.29051943989354	4.0631262886038	4.80779891547476	4.94444708596294	3.81131873884654	4.96530853360335	3.55263469715034	-0.545714724419411	0.222590497616348	0.714202386450601
Merged-chr12-111270060-2	chr12	111269960	111270160	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1036.0	NM_033603	93835.0	Mm.197639	NM_033603	ENSMUSG00000021278	Amn	-	amnionless	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-109028505-4	chr7	109028450	109028650	+	784.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021885, intron 9 of 11)	L2a|LINE|L2	17670.0	NM_021885	22141.0	Mm.439722	NM_021885	ENSMUSG00000031028	Tub	rd5|tub	tubby bipartite transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-50982918-4	chr2	50982828	50983028	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	73244.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-62077746-2	chr15	62077649	62077849	+	782.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_132746, intron 1 of 6)	intron (NR_132746, intron 1 of 6)	38492.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	1.54885958323202	1.27317735673469	2.11171956562888	1.63025681870078	1.18779714031459	1.07522104122025	1.90115203010787	1.51646382424829	-0.790971676047133	0.505265744593821	0.940939014262092
Merged-chr1-181840184-4	chr1	181840079	181840279	+	987.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133815, intron 1 of 13)	intron (NM_133815, intron 1 of 13)	2222.0	NM_133815	98386.0	Mm.4538	NM_133815	ENSMUSG00000004880	Lbr	AI505894|ic	lamin B receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-76619806-2	chr11	76619706	76619906	+	602.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-42067.0	NM_198894	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-8649771-4	chr8	8649694	8649894	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010111, intron 1 of 4)	intron (NM_010111, intron 1 of 4)	10979.0	NM_010111	13642.0	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67537600-6	chr10	67537499	67537699	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010118)	promoter-TSS (NM_010118)	-270.0	NM_010118	13654.0	Mm.290421	NM_010118	ENSMUSG00000037868	Egr2	Egr-2|Krox-20|Krox20|NGF1-B|Zfp-25|Zfp-6	early growth response 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-138705368-1	chr5	138705268	138705468	+	622.0	f0_balb.idr	Intergenic	Intergenic	-49713.0	NM_030565	80752.0	Mm.320355	NM_030565	ENSMUSG00000025854	Fam20c	C76981|DMP-4|DMP4|GEF-CK|mKIAA4081	family with sequence similarity 20, member C	protein-coding	-0.637775572482617	-0.628103226012634	-0.6312863081779	-0.342334694602479	-0.637175636561816	-0.62738382625011	-0.457137334110234	-0.114955504197219	1.3110215446899	0.631701603394017	1
Merged-chr1-194992785-4	chr1	194992696	194992896	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15837.0	NR_033564	320400.0	Mm.417608	NR_033564	ENSMUSG00000097325	Gm16897	C030002c11rik	predicted gene, 16897	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-22061370-3	chr3	22061276	22061476	+	821.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15276.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-79256272-2	chr18	79256172	79256372	+	765.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-146881.0	NM_053099	240427.0	Mm.312871	NM_053099	ENSMUSG00000024548	Setbp1	C130092E12|Seb|mKIAA0437	SET binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-88255069-4	chr7	88254981	88255181	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-23004.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-116134843-4	chr9	116134703	116134903	+	891.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029575, intron 1 of 6)	B3A|SINE|B2	40560.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	0.911921864968224	1.76184574011738	2.35853381379677	1.16224907202469	0.916146661655489	1.44793896565268	2.05367755336765	1.65226284456801	-0.310281524308556	0.80607852966981	0.998431161219273
Merged-chr6-94283891-4	chr6	94283718	94283918	+	932.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286784)	promoter-TSS (NM_001286784)	99.0	NM_010367	14924.0	Mm.217216	NM_010367	ENSMUSG00000045095	Magi1	AIP3|BAP1|Baiap1|Gukmi1|MAGI1c|Magi-1|TNRC19|WWP3|mKIAA4129	membrane associated guanylate kinase, WW and PDZ domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-36220407-3	chr17	36220329	36220529	+	865.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30278.0	NM_008208	15043.0	Mm.426002	NM_008208	ENSMUSG00000054128	H2-T3	H-2T3|H2-Tw3|MumuTL|TL	histocompatibility 2, T region locus 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191070433-4	chr1	191070281	191070481	+	903.6904910000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198654, intron 3 of 5)	intron (NM_198654, intron 3 of 5)	7360.0	NM_198654	381318.0	Mm.32504	NM_198654	ENSMUSG00000062510	Nsl1	4833432M17Rik|AI451597|Gm105|Gm984	NSL1, MIS12 kinetochore complex component	protein-coding	3.14863424466765	3.18595094647208	3.25177968335808	2.80456703160157	2.87232464011612	2.8858847379741	2.52346709333056	3.01345019877683	-0.4933198274962	0.438154919951905	0.908612234382228
Merged-chr19-37548178-3	chr19	37548084	37548284	+	912.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2234.0	NM_175353	107371.0	Mm.24865	NM_175353	ENSMUSG00000053799	Exoc6	4833405E05Rik|AW413330|C430002C19|Sec15|Sec15l1|hbd|msec15	exocyst complex component 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46344909-2	chr19	46344809	46345009	+	727.483337	f1_balb.idr|f1_c57bl6.idr	Intergenic	BGLII_B|LTR|ERVK	2147.0	NR_030468	751550.0		NR_030468	ENSMUSG00000070127	Mir146b	Mirn146b|mir-146b	microRNA 146b	ncRNA	0.0609191081081045	-0.543259658290329	-0.376596863049848	-0.549252198576533	-0.29254692875577	-0.542494119837375	-0.545901500888275	-0.548797760296711	-1.64839673877502	0.537904451117146	1
Merged-chr4-147235617-2	chr4	147235517	147235717	+	599.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039209, intron 1 of 2)	Lx8|LINE|L1	59751.0	NM_001039209	195531.0	Mm.270762	NM_001039209	ENSMUSG00000078496	Zfp982	Gm13152	zinc finger protein 982	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171682137-6	chr1	171682076	171682276	+	914.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007649, intron 1 of 3)	intron (NM_007649, intron 1 of 3)	184.0	NM_001360767	12506.0	Mm.1738	NM_007649	ENSMUSG00000015355	Cd48	AI449234|AW610730|BCM1|BLAST|BLAST-1|BLAST1|Bcm-1|MEM-102|SLAMF2|Sgp-60	CD48 antigen	protein-coding	3.5727402405877	2.88895294140135	3.04275393363573	3.69491578933413	4.17877373291645	3.28861876686727	3.37438464591743	2.97011732679474	0.305182153808311	0.605546038899792	0.974576632476413
Merged-chr3-145738153-4	chr3	145738074	145738274	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20518.0	NM_026993	69219.0	Mm.234247	NM_026993	ENSMUSG00000028194	Ddah1	2410006N07Rik|2510015N06Rik|AI987801|AW050362	dimethylarginine dimethylaminohydrolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-64753315-4	chr1	64753221	64753421	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15571.0	NM_022721	14367.0	Mm.150813	NM_022721	ENSMUSG00000045005	Fzd5	5330434N09Rik|AI427138|Fz-5|Fz5|mFz5	frizzled class receptor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-68052917-4	chr18	68052783	68052983	+	860.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172631, intron 1 of 5)	intron (NM_172631, intron 1 of 5)	119710.0	NM_172631	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-145268941-2	chr4	145268841	145269041	+	620.299988	f1_balb.idr|f1_c57bl6.idr	TTS (NM_009401)	TTS (NM_009401)	-22071.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-50410084-4	chr17	50409987	50410187	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-99460.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-90728910-2	chr10	90728811	90729011	+	641.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_181398, intron 3 of 9)	intron (NM_181398, intron 3 of 9)	-100743.0	NM_001347054	77531.0	Mm.440605	NM_181398	ENSMUSG00000058589	Anks1b	AIDA-1|AIDA-1b|C030032C09Rik|E530015N03Rik|EB-1|Gm10937|Gm1555	ankyrin repeat and sterile alpha motif domain containing 1B	protein-coding	1.37890571989565	0.647339006534556	0.850137644244778	1.65102511801684	0.791775979985893	0.650303921572442	0.636985762612712	1.6620711742725	-0.644549681742351	0.676439225802206	0.99440487726309
Merged-chr11-45008366-2	chr11	45008266	45008466	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_007897)	TTS (NM_007897)	108562.0	NR_045100	100504255.0	Mm.123608	NR_045100	ENSMUSG00000084773	Gm12159	-	predicted gene 12159	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-42855427-2	chr17	42855274	42855474	+	764.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_009847, intron 1 of 17)	intron (NM_009847, intron 1 of 17)	21050.0	NM_009847	12488.0	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding	1.6708340963106	0.749712245254962	0.940650377504835	0.727360459898578	1.54075536991856	1.15952589819842	1.39252153594988	0.921886134369865	0.674347227377092	0.636379086720776	0.982417279970648
Merged-chr3-75275488-2	chr3	75275388	75275588	+	627.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	-5410.0	NM_026460	67931.0	Mm.259446	NM_026460	ENSMUSG00000034139	Serpini2	Spi14	serine (or cysteine) peptidase inhibitor, clade I, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101046461-2	chr15	101046361	101046561	+	623.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_011323)	TTS (NM_011323)	7938.0	NM_001214911	668225.0	Mm.385011	NM_001214911	ENSMUSG00000095440	Fignl2	EG668225	fidgetin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85704783-4	chr12	85704707	85704907	+	907.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016767, intron 2 of 2)	intron (NM_016767, intron 2 of 2)	18087.0	NM_016767	53314.0	Mm.6672	NM_016767	ENSMUSG00000034266	Batf	B-ATF|SFA-2	basic leucine zipper transcription factor, ATF-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-21502008-2	chr14	21501908	21502108	+	921.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_017479, intron 1 of 16)	intron (NM_017479, intron 1 of 16)	2223.0	NM_017479	54169.0	Mm.248967	NM_017479	ENSMUSG00000021767	Kat6b	AI507552|B130044K16Rik|MYST-4|Morf|Myst4|mKIAA0383|qkf|querkopf	K(lysine) acetyltransferase 6B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-13296622-4	chr9	13296529	13296729	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49673.0	NM_025534	66396.0	Mm.290620	NM_025534	ENSMUSG00000079084	Ccdc82	2310043N13Rik	coiled-coil domain containing 82	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-172318051-2	chr1	172317962	172318162	+	589.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_080419, exon 4 of 7)	exon (NM_080419, exon 4 of 7)	5695.0	NM_080419	140559.0	Mm.271717	NM_080419	ENSMUSG00000038034	Igsf8	ESTM34|EWI-2|KCT-4|PGRL	immunoglobulin superfamily, member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-100194339-4	chr12	100194219	100194419	+	773.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_045282)	TTS (NR_045282)	-5116.0	NM_009790	12313.0	Mm.285993	NM_009790	ENSMUSG00000001175	Calm1	AI256814|AI327027|AI461935|AL024000|CaM|Calm|Cam1	calmodulin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-6782169-4	chr17	6782051	6782251	+	980.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009510, intron 1 of 12)	intron (NM_009510, intron 1 of 12)	629.0	NM_009510	22350.0	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-55067436-4	chr13	55067383	55067583	+	759.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_121592, intron 6 of 13)	L1M2|LINE|L1	26923.0	NM_001359757	20184.0	Mm.259301	NM_011307	ENSMUSG00000025878	Uimc1	9430016E08Rik|D330018D10Rik|D630032M02Rik|RIP110|Rxrip110	ubiquitin interaction motif containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-22192870-4	chr8	22192754	22192954	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027338)	promoter-TSS (NM_027338)	-6.0	NM_027338	70160.0	Mm.41453	NM_027338	ENSMUSG00000031479	Vps36	1700010A24Rik|2210415M20Rik|2810408E15Rik|Eap45	vacuolar protein sorting 36	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-25609542-4	chr14	25609453	25609653	+	916.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 6 of 23)	intron (NM_183208, intron 6 of 23)	6040.0	NM_001309430	100188919.0	Mm.473810	NM_001309430		Gm45915	Israa	predicted gene, 45915	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101064718-2	chr11	101064618	101064818	+	548.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-5376.0	NM_013792	27419.0	Mm.95452	NM_013792	ENSMUSG00000001751	Naglu	-	alpha-N-acetylglucosaminidase (Sanfilippo disease IIIB)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45304578-2	chr7	45304478	45304678	+	808.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175130, intron 24 of 24)	intron (NM_175130, intron 24 of 24)	-20380.0	NR_110499	100040970.0	Mm.289810	NR_110499	ENSMUSG00000046721	Rpl14-ps1	Gm9811	ribosomal protein L14, pseudogene 1	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81801754-2	chr15	81801654	81801854	+	560.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153484)	promoter-TSS (NM_153484)	859.0	NR_155271	100504312.0	Mm.384036	NR_155271	ENSMUSG00000097613	Gm17597	-	predicted gene, 17597	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-47463923-8	chr19	47463753	47463953	+	926.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008018, intron 1 of 14)	intron (NM_008018, intron 1 of 14)	558.0	NM_001164717	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	2.26026656692493	2.16889955577453	2.4576260500625	2.16431367303146	2.80245791255853	1.33635658266585	2.75278399227963	1.27319293251481	0.00560513470185826	0.995562964165817	0.998559140951469
Merged-chr15-49691351-1	chr15	49691251	49691451	+	560.0	f1_c57bl6.idr	Intergenic	Lx2B2|LINE|L1	-899362.0	NM_001081391	239420.0	Mm.309363	NM_001081391	ENSMUSG00000022311	Csmd3	4930500N14Rik|mKIAA1894	CUB and Sushi multiple domains 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150459718-2	chr4	150459619	150459819	+	746.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 4 of 22)	intron (NM_001085492, intron 4 of 22)	177803.0	NM_001085492	68703.0	Mm.291274	NM_001085492	ENSMUSG00000039852	Rere	1110033A15Rik|AI414665|ARG|ARP|ATN1L|AW742570|Atr2|DNB1|eye<m03Jus>|eyes3|mKIAA0458	arginine glutamic acid dipeptide (RE) repeats	protein-coding	-1.27480050717774	-0.604729833679879	-1.25573295904267	-1.26493563944758	-1.27428069156472	-1.24210192204986	-1.25319678955844	-1.26328836405502	-2.6632876257018	0.439827081912762	1
Merged-chr4-3615968-1	chr4	3615868	3616068	+	610.0	f1_c57bl6.idr	3' UTR (NM_054089, exon 13 of 13)	3' UTR (NM_054089, exon 13 of 13)	-40538.0	NR_040643	70143.0	Mm.417835	NR_040643	ENSMUSG00000085394	2210414B05Rik	-	RIKEN cDNA 2210414B05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-146734255-3	chr5	146734167	146734367	+	759.516663	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011669)	TTS (NM_011669)	60689.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-4234487-4	chr18	4234393	4234593	+	894.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F2|LTR|ERVL-MaLR	68661.0	NM_026092	67328.0	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-164803607-4	chr2	164803523	164803723	+	908.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133240, intron 1 of 5)	intron (NM_133240, intron 1 of 5)	1258.0	NM_133240	170789.0	Mm.277878	NM_133240	ENSMUSG00000017307	Acot8	PTE-2|Pte1	acyl-CoA thioesterase 8	protein-coding	2.91412349218777	2.7990449960396	3.50170314825644	3.40556957066999	3.02801751753558	3.19735024026684	2.20057709843943	4.11512904667356	0.216687939838012	0.745971801385417	0.998431161219273
Merged-chr6-129114210-1	chr6	129114110	129114310	+	631.0	f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	-2308.0	NR_073569	724020.0	Mm.424965	NR_073569		Klrb1-ps1	Nkrp1e	killer cell lectin-like receptor subfamily B member 1, pseudogene 1	pseudo	-0.0739087119077624	0.132189645525781	0.496806261515724	-0.0674609921428777	-0.0729499470943075	0.136938048919701	0.507799295859311	-0.0667821097096705	0.0405693108426807	0.985131444299559	1
Merged-chr5-124474984-2	chr5	124474884	124475084	+	824.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030259, intron 1 of 3)	intron (NM_030259, intron 1 of 3)	3251.0	NM_030259	80291.0	Mm.425280	NM_030259	ENSMUSG00000029401	Rilpl2	-	Rab interacting lysosomal protein-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-11520001-2	chr16	11519901	11520101	+	581.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028964, intron 14 of 20)	intron (NM_028964, intron 14 of 20)	114353.0	NM_001290148	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115630630-3	chr11	115630532	115630732	+	860.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	-2337.0	NM_001252395	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127392503-6	chr7	127392515	127392715	+	844.2777710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198011, intron 2 of 2)	intron (NM_198011, intron 2 of 2)	1006.0	NM_198011	101604.0	Mm.334241	NM_198011	ENSMUSG00000078580	E430018J23Rik	AI480612	RIKEN cDNA E430018J23 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-94509034-1	chr6	94508934	94509134	+	579.0	f0_balb.idr	intron (NM_026255, intron 2 of 9)	intron (NM_026255, intron 2 of 9)	8720.0	NM_026255	67582.0	Mm.280725	NM_026255	ENSMUSG00000045100	Slc25a26	4930433D19Rik|4933433F13Rik|AW557176|D6Bwg0781e|Slc25a6	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 26	protein-coding	-0.715717192403442	-0.843501735450956	-0.848263302100068	-0.69094195374356	-0.300531426182343	-0.84083072832072	-0.84764360050583	-0.850049330055209	1.1264166349365	0.69501004979533	1
Merged-chr18-5819898-4	chr18	5819787	5819987	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	227240.0	NM_001360981	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-74396878-2	chr17	74396778	74396978	+	639.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252478, intron 1 of 13)	B3|SINE|B2	1270.0	NM_144798	210148.0	Mm.243943	NM_144798	ENSMUSG00000024069	Slc30a6	9530029F08Rik|ZnT6	solute carrier family 30 (zinc transporter), member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-124710325-4	chr2	124710205	124710405	+	966.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	56724.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-34270053-3	chr4	34269917	34270117	+	572.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-219950.0	NM_026293	67652.0	Mm.55848	NM_026293	ENSMUSG00000028264	Spaca1	1700124L11Rik|4930540L03Rik	sperm acrosome associated 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-21312385-2	chr5	21312285	21312485	+	809.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029195, intron 9 of 18)	Lx9|LINE|L1	-60288.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-27446208-2	chr3	27446108	27446308	+	652.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356953, intron 23 of 26)	intron (NM_001356953, intron 23 of 26)	74857.0	NM_177330	208188.0	Mm.194721	NM_177330	ENSMUSG00000051136	Ghsr	C530020I22Rik|GHRP|GHS-R|Ghsr1a	growth hormone secretagogue receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-113822742-2	chr2	113822642	113822842	+	584.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009162, intron 2 of 5)	intron (NM_009162, intron 2 of 5)	6349.0	NM_009162	20394.0	Mm.4836	NM_009162	ENSMUSG00000023236	Scg5	7B2|AI325031|Sgne-1|Sgne1	secretogranin V	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-43462886-4	chr1	43462800	43463000	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010879, intron 1 of 4)	intron (NM_010879, intron 1 of 4)	17149.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4144602-2	chr19	4144502	4144702	+	628.666687	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_206973, exon 2 of 2)	3' UTR (NM_206973, exon 2 of 2)	-4061.0	NM_011778	23789.0	Mm.276859	NM_011778	ENSMUSG00000024835	Coro1b	-	coronin, actin binding protein 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-11103952-4	chr8	11103838	11104038	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-95508.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-12467677-4	chr19	12467675	12467875	+	843.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172442, exon 9 of 9)	3' UTR (NM_172442, exon 9 of 9)	6996.0	NM_010821	17476.0	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-69919032-2	chr10	69918932	69919132	+	703.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_170689, intron 23 of 41)	RSINE1|SINE|B4	-6500.0	NM_170687	11735.0	Mm.235960	NM_009670	ENSMUSG00000069601	Ank3	2900054D09Rik|AI314020|Ank-3|AnkG|Ankyrin-3|Ankyrin-G	ankyrin 3, epithelial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75154357-4	chr11	75154272	75154472	+	992.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001002764, intron 15 of 18)	intron (NM_001002764, intron 15 of 18)	13780.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36687906-1	chr18	36687806	36688006	+	742.0	f0_balb.idr	intron (NM_172831, intron 9 of 12)	URR1B|DNA|hAT-Charlie	8019.0	NM_172831	240216.0	Mm.252323	NM_172831	ENSMUSG00000044719	E230025N22Rik	EG240216	Riken cDNA E230025N22 gene	protein-coding	1.88927687531236	1.37380870690555	2.26678954217689	1.27224688237378	3.2163684115568	3.23601979481224	4.15642477496409	2.83776686964902	3.32826458591216	9.61998890346779e-05	0.00301621847205069
Merged-chr17-34187591-6	chr17	34187485	34187685	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013683)	promoter-TSS (NM_013683)	29.0	NM_013683	21354.0	Mm.482076	NM_013683	ENSMUSG00000037321	Tap1	ABC17|APT1|Abcb2|Ham-1|Ham1|MTP1|PSF1|RING4|TAP|Tap-1|Y3	transporter 1, ATP-binding cassette, sub-family B (MDR/TAP)	protein-coding	4.62711327252719	5.2486693530542	4.60840323818754	3.92791836711499	4.2626996029858	4.13718767621102	4.38784763262723	4.31384487645453	-0.505448061865923	0.215381109593526	0.705944860566832
Merged-chr17-31109411-1	chr17	31109311	31109511	+	1000.0	f1_balb.idr	intron (NM_009593, intron 10 of 14)	intron (NM_009593, intron 10 of 14)	20200.0	NM_011575	21786.0	Mm.4641	NM_011575	ENSMUSG00000024029	Tff3	ITF|mITF	trefoil factor 3, intestinal	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70446245-1	chr8	70446145	70446345	+	828.0	f1_balb.idr	Intergenic	ORR1A2|LTR|ERVL-MaLR	-6672.0	NM_001004062	382056.0	Mm.227767	NM_001004062	ENSMUSG00000003575	Crtc1	AI413414|Mect1|R74955|TORC1|mKIAA0616	CREB regulated transcription coactivator 1	protein-coding	1.29738887201893	1.02155435293992	1.29601685815715	1.47796382945041	1.40589868140971	1.48698377353466	0.800697241937793	0.790334467758077	-0.463904585257335	0.736095575929691	0.998431161219273
Merged-chr8-71291059-4	chr8	71290968	71291168	+	998.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001142323, exon 2 of 39)	exon (NM_001142323, exon 2 of 39)	18354.0	NM_001142323	17925.0	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	0.988562903752388	2.3029094145033	1.27759617479314	1.43314819781636	1.20069441654123	1.99838022162918	1.92592072798602	2.16177300390718	0.725306800364267	0.530774452861204	0.950576955731226
Merged-chr8-13107407-2	chr8	13107307	13107507	+	782.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_146207, intron 2 of 19)	RSINE1|SINE|B4	1686.0	NM_146207	99375.0	Mm.212861	NM_146207	ENSMUSG00000031446	Cul4a	2810470J21Rik|AW495282	cullin 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-87529770-4	chr3	87529687	87529887	+	820.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359750, intron 4 of 4)	intron (NM_001359750, intron 4 of 4)	4209.0	NM_001359750	27049.0	Mm.219460	NM_012051	ENSMUSG00000003382	Etv3	AI414410|METS|Pe1	ets variant 3	protein-coding	0.861193196451325	0.45658480963342	0.446249716357691	0.438174753940773	1.17315826124906	0.869525252080786	1.49788805141559	0.439592027585798	2.6332156512202	0.137307029496019	0.577568062866282
Merged-chr3-36470763-2	chr3	36470663	36470863	+	890.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_009673, intron 2 of 12)	PB1D7|SINE|Alu	4761.0	NR_105976	102466786.0		NR_105976	ENSMUSG00000098808	Mir7009	Gm27472|mmu-mir-7009	microRNA 7009	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-76160983-4	chr18	76160892	76161092	+	921.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-9560.0	NR_105776	102465184.0		NR_105776	ENSMUSG00000098276	Mir6358	Gm27830|mmu-mir-6358	microRNA 6358	ncRNA	4.6957017525542	3.80737017027949	4.50341699237082	4.25334428075853	4.17261866302241	3.32478535568386	3.43013286597304	2.83383492539475	-1.12511208685913	0.0251092149814424	0.209888779387376
Merged-chr5-101996242-1	chr5	101996142	101996342	+	770.0	f1_c57bl6.idr	intron (NM_172882, intron 3 of 66)	intron (NM_172882, intron 3 of 66)	73679.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0.775891736216837	-0.0828923915548552	0.251095137214871	-0.0928466658693213	-0.0990013119975259	0.29319435829599	-0.0872653523949553	-0.0920873510275373	-2.10391258958212	0.36389101599918	1
Merged-chr11-94149856-3	chr11	94149749	94149949	+	921.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1H1|LTR|ERVL-MaLR	-61605.0	NM_009427	22057.0	Mm.259673	NM_009427	ENSMUSG00000037573	Tob1	Tob|Trob	transducer of ErbB-2.1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4633389-2	chr16	4633289	4633489	+	625.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_030205, exon 16 of 28)	exon (NM_030205, exon 16 of 28)	-6556.0	NM_139307	246154.0	Mm.482140	NM_139307	ENSMUSG00000039646	Vasn	2610528G05Rik|Atia|Slitl2	vasorin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-65716226-2	chr17	65716126	65716326	+	567.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133685, intron 3 of 6)	Lx9|LINE|L1	56526.0	NM_133685	106572.0	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-36711480-4	chr16	36711388	36711588	+	992.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285788, intron 3 of 7)	intron (NM_001285788, intron 3 of 7)	17510.0	NM_001285791	106347.0	Mm.17807	NM_134109	ENSMUSG00000022900	Ildr1	AU041483|AU044638	immunoglobulin-like domain containing receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75646677-2	chr11	75646577	75646777	+	734.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008916, intron 8 of 11)	intron (NM_008916, intron 8 of 11)	-4832.0	NM_008659	17913.0	Mm.234502	NM_008659	ENSMUSG00000017774	Myo1c	C80397|MMIb|MYO1E|NMI|mm1beta|myr2	myosin IC	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-54449163-4	chr14	54449098	54449298	+	944.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14949.0	NM_022993	65107.0	Mm.472719	NM_022993	ENSMUSG00000022175	Lrp10	Lrp9	low-density lipoprotein receptor-related protein 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-66144410-1	chr9	66144310	66144510	+	637.0	f1_balb.idr	Intergenic	Intergenic	-13816.0	NM_010019	13143.0	Mm.304472	NM_010019	ENSMUSG00000032380	Dapk2	-	death-associated protein kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-61454737-4	chr18	61454625	61454825	+	879.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	29882.0	NR_045419	442846.0	Mm.417648	NR_045419		A530050N04Rik	-	RIKEN cDNA A530050N04 gene	ncRNA	3.66035639967789	3.47427576131861	4.0013200416307	3.34250410539562	2.49050941438044	3.20627810751886	3.54341034552489	1.60194946495674	-1.18897753313161	0.0784288075100016	0.426558854263372
Merged-chr10-68251466-1	chr10	68251366	68251566	+	958.0	f1_balb.idr	intron (NM_023598, intron 2 of 9)	intron (NM_023598, intron 2 of 9)	27260.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	-1.06997269762433	-1.30473905204845	-1.3145270772132	-1.32256725251374	-1.06385251204029	-1.30261794616352	-1.3123112828633	-1.32112806497905	0.0394047164033882	0.991001358494878	1
Merged-chr3-15245076-4	chr3	15244958	15245158	+	901.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	87244.0	NM_001076679	751864.0	Mm.431296	NM_001076679	ENSMUSG00000078783	Gm9733	-	predicted gene 9733	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-38788785-4	chr12	38788679	38788879	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163154, intron 1 of 9)	intron (NM_001163154, intron 1 of 9)	5068.0	NM_001163154	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	5.3495704631728	4.9459075774618	5.31714960652027	5.05776117970302	5.02078005502635	4.97939077998244	5.25605560041934	5.89805665605652	0.189072164421951	0.552997887728411	0.959564390599126
Merged-chr7-4134323-4	chr7	4134234	4134434	+	815.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001305822, exon 14 of 14)	3' UTR (NM_001305822, exon 14 of 14)	2592.0	NR_033548	100037396.0	Mm.447887	NR_033548	ENSMUSG00000085886	D030047H15Rik	Gm15924	RIKEN cDNA D030047H15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132307608-2	chr4	132307508	132307708	+	832.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-1070.0	NR_029468	100039864.0	Mm.258912	NR_029468	ENSMUSG00000086290	Snhg12	2310005L22Rik	small nucleolar RNA host gene 12	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-40225425-2	chr12	40225325	40225525	+	727.166687	f1_balb.idr|f1_c57bl6.idr	intron (NR_045157, intron 2 of 2)	intron (NR_045157, intron 2 of 2)	2061.0	NR_045157	629820.0	Mm.435540	NR_045157	ENSMUSG00000035983	Gm7008	EG629820	predicted gene 7008	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132113568-3	chr4	132113462	132113662	+	749.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013622, exon 3 of 3)	exon (NM_013622, exon 3 of 3)	30924.0	NM_013622	18386.0	Mm.5243	NM_013622	ENSMUSG00000050511	Oprd1	DOR|DOR-1|Nbor|mDOR	opioid receptor, delta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-29248616-3	chr6	29248540	29248740	+	813.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23848.0	NM_001190461	69573.0	Mm.45161	NM_023516	ENSMUSG00000043421	Hilpda	2310016C08Rik|AW049004|Hig2	hypoxia inducible lipid droplet associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-104221766-2	chr3	104221666	104221866	+	737.8000490000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1360.0	NM_001159354	99470.0	Mm.264849	NM_133853	ENSMUSG00000052539	Magi3	4732496O19Rik|6530407C02Rik|AA407180|AI120132|mKIAA1634	membrane associated guanylate kinase, WW and PDZ domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-40017178-4	chr12	40017067	40017267	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20209.0	NM_007487	11861.0	Mm.12723	NM_007487	ENSMUSG00000047446	Arl4a	AI467555|Arl4	ADP-ribosylation factor-like 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-40269242-6	chr9	40269122	40269322	+	772.444458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178227)	promoter-TSS (NM_178227)	6.0	NM_001359700	235281.0	Mm.290083	NM_153522	ENSMUSG00000049281	Scn3b	1110001K16Rik|4833414B02Rik|Scnb3	sodium channel, voltage-gated, type III, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-44207777-2	chr12	44207677	44207877	+	971.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013760, intron 2 of 2)	intron (NM_013760, intron 2 of 2)	2291.0	NM_013760	27362.0	Mm.27432	NM_013760	ENSMUSG00000014905	Dnajb9	AA408011|AA673251|AA673481|AW556981|ERdj4|Mdg1|mDj7	DnaJ heat shock protein family (Hsp40) member B9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-26492593-2	chr2	26492493	26492693	+	739.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008714, intron 2 of 33)	intron (NM_008714, intron 2 of 33)	11229.0	NM_008714	18128.0	Mm.290610	NM_008714	ENSMUSG00000026923	Notch1	9930111A19Rik|Mis6|N1|Tan1|lin-12	notch 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-73034790-4	chr15	73034685	73034885	+	907.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164643, intron 4 of 8)	intron (NM_001164643, intron 4 of 8)	21027.0	NM_029640	76510.0	Mm.158902	NM_029640	ENSMUSG00000047921	Trappc9	1810044A24Rik|2900005P22Rik|4632408O18Rik|Ibp|Nibp|TRS130|mKIAA1882	trafficking protein particle complex 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-76905522-4	chr5	76905413	76905613	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173765)	promoter-TSS (NM_173765)	1.0	NM_173765	231326.0	Mm.39271	NM_173765	ENSMUSG00000055923	Aasdh	A230062G08Rik|A830035E16|Acsf4|U26	aminoadipate-semialdehyde dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69405485-2	chr11	69405385	69405585	+	692.3000490000001	f1_balb.idr|f1_c57bl6.idr	exon (NM_001017426, exon 11 of 23)	exon (NM_001017426, exon 11 of 23)	-7251.0	NM_025915	67020.0	Mm.390406	NM_025915	ENSMUSG00000045377	Tmem88	2600017H02Rik	transmembrane protein 88	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36744615-4	chr18	36744507	36744707	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011879)	promoter-TSS (NM_011879)	-20.0	NM_010885	17991.0	Mm.29867	NM_010885	ENSMUSG00000014294	Ndufa2	AV000592|B8|C1-B8|CI-B8	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117846077-4	chr10	117846007	117846207	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024457)	promoter-TSS (NM_024457)	-133.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-99581309-4	chr10	99581197	99581397	+	909.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27874.0	NR_038019	100504202.0	Mm.403801	NR_038019	ENSMUSG00000111962	Gm20110	-	predicted gene, 20110	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119503874-3	chr11	119503763	119503963	+	849.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164636, intron 7 of 8)	intron (NM_001164636, intron 7 of 8)	12243.0	NM_177394	338371.0	Mm.271946	NM_177394	ENSMUSG00000039850	Endov	A730011L01Rik	endonuclease V	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-77907136-2	chr10	77907036	77907236	+	831.166626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_138301)	TTS (NM_138301)	-4600.0	NM_145152	237387.0	Mm.133301	NM_145152	ENSMUSG00000051652	Lrrc3	1300011L04Rik|C21orf102	leucine rich repeat containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-9951690-2	chr19	9951590	9951790	+	633.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MURVY-LTR|LTR|ERV1	-28910.0	NR_073181	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-84118273-2	chr6	84118173	84118373	+	558.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077694, intron 30 of 54)	intron (NM_001077694, intron 30 of 54)	98887.0	NM_021469	26903.0	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-117138740-4	chr5	117138622	117138822	+	960.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081308, intron 1 of 19)	intron (NM_001081308, intron 1 of 19)	5134.0	NM_183306	330177.0	Mm.24343	NM_183306	ENSMUSG00000061288	Taok3	2900006A08Rik|A130052D22|A430105I05Rik	TAO kinase 3	protein-coding	2.7045826857541	3.03514779243657	3.53017363436303	3.05028046971107	2.7273019220289	3.05728865886053	3.55617819954661	2.97009339583621	-0.00028361175379387	0.999640631322035	0.999914272987644
Merged-chr6-129238036-4	chr6	129237930	129238130	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040265)	promoter-TSS (NR_040265)	15.0	NR_040265	76432.0	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	4.38324005448934	4.87778380312597	5.01141031739845	5.28937807882074	5.1483147087338	4.54534131205039	4.93145892285557	4.26815201110926	-0.186306553353989	0.611769576706721	0.975978820316538
Merged-chr10-13017072-2	chr10	13016972	13017172	+	693.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur3|SINE|Alu	8622.0	NM_175102	66125.0	Mm.29743	NM_175102	ENSMUSG00000078348	Sf3b5	10kDa|1110005L13Rik|AU043053|Sf3b10	splicing factor 3b, subunit 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-57353866-4	chr16	57353765	57353965	+	952.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	588.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-58200926-2	chr9	58200826	58201026	+	886.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161538, intron 2 of 3)	intron (NM_001161538, intron 2 of 3)	789.0	NM_001161537	320563.0	Mm.186499	NM_177193	ENSMUSG00000051243	Islr2	B930052A04Rik|Linx|Mbu-3|mKIAA1465	immunoglobulin superfamily containing leucine-rich repeat 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-19418821-4	chr14	19418724	19418924	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GSAT_MM|Satellite|Satellite	183763.0	NM_001024706	432825.0	Mm.327147	NM_001024706	ENSMUSG00000095024	Gm5458	EG432825	predicted gene 5458	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-43578525-4	chr16	43578417	43578617	+	959.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181058, intron 5 of 6)	intron (NM_181058, intron 5 of 6)	-62138.0	NR_030576	100124467.0		NR_030576	ENSMUSG00000076372	Mir568	Mirn568|mmu-mir-568	microRNA 568	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28524139-2	chr17	28524039	28524239	+	770.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6722.0	NM_026290	67645.0	Mm.46170	NM_026290	ENSMUSG00000024223	Armc12	4930511I11Rik|AV041658	armadillo repeat containing 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75193906-3	chr11	75193783	75193983	+	841.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177708)	promoter-TSS (NM_177708)	-110.0	NM_177708	237847.0	Mm.82661	NM_177708	ENSMUSG00000045287	Rtn4rl1	Ngr3|Ngrh2|Ngrl2	reticulon 4 receptor-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97308754-2	chr6	97308654	97308854	+	753.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 13 of 23)	intron (NM_145148, intron 13 of 23)	-55974.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-79611293-4	chr2	79611196	79611396	+	971.892822	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24129.0	NM_080558	70599.0	Mm.272881	NM_080558	ENSMUSG00000027007	Ssfa2	5730488C15Rik|CS-1|CS1|KRAP|SPAG13|mKIAA1927	sperm specific antigen 2	protein-coding	3.78073042124223	3.01553994791609	3.1438459106586	3.96971316435979	2.80664629484136	2.74023537032576	4.24582633972998	3.16974990466372	-0.221560904791398	0.723095165108711	0.998431161219273
Merged-chr12-9007224-4	chr12	9007121	9007321	+	990.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172470, intron 15 of 27)	intron (NM_172470, intron 15 of 27)	-22776.0	NM_029321	75516.0	Mm.37581	NM_029321	ENSMUSG00000066637	Ttc32	1700013G20Rik	tetratricopeptide repeat domain 32	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101908498-4	chr7	101908378	101908578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025605, intron 1 of 4)	intron (NM_025605, intron 1 of 4)	-2119.0	NM_001081679	791260.0	Mm.475469	NM_001081679	ENSMUSG00000078630	Tomt	Comt2|F930017I19Rik	transmembrane O-methyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-40478729-2	chr10	40478629	40478829	+	546.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198164, intron 11 of 11)	intron (NM_198164, intron 11 of 11)	-91633.0	NM_027572	70840.0	Mm.332570	NM_027572	ENSMUSG00000019834	Slc22a16	4921504E14Rik|CT2|FLIPT2|OCT6|OKB1	solute carrier family 22 (organic cation transporter), member 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88380241-3	chr3	88380144	88380344	+	801.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1543.0	NM_001032298	12097.0	Mm.425160	NM_001032298	ENSMUSG00000074486	Bglap2	BGP2|Bglap1|Bgp|Og2|mOC-B	bone gamma-carboxyglutamate protein 2	protein-coding	1.93482371329576	2.01323700478467	1.94698256610198	2.78643104386431	2.0710430322533	2.027797118931	1.58038176734272	2.86651748520047	0.0140396785090249	0.987827558244905	0.998431161219273
Merged-chr4-65589984-4	chr4	65589884	65590084	+	753.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207109, intron 16 of 22)	intron (NM_207109, intron 16 of 22)	-15002.0	NM_053084	69807.0	Mm.22786	NM_053084	ENSMUSG00000051675	Trim32	1810045E12Rik|3f3|BBS11|Zfp117	tripartite motif-containing 32	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24658286-4	chr17	24658181	24658381	+	718.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001099664, exon 1 of 2)	exon (NM_001099664, exon 1 of 2)	144.0	NM_001099664	381073.0	Mm.291772	NM_001099664	ENSMUSG00000071230	Npw	Gm935	neuropeptide W	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-80152936-2	chr11	80152836	80153036	+	596.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TC)n|Simple_repeat|Simple_repeat	-1226.0	NM_172133	216991.0	Mm.341520	NM_172133	ENSMUSG00000020709	Adap2	Centa2	ArfGAP with dual PH domains 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-45006706-2	chr13	45006606	45006806	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-4610.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	2.01343604014591	1.6331458816152	1.42633800513805	1.96759084293287	1.47121526245395	1.78635652446616	1.25532888302432	1.01998009203992	-1.24721726015627	0.278073040819464	0.781792858737504
Merged-chr9-32500263-4	chr9	32500148	32500348	+	754.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008026, intron 1 of 8)	intron (NM_008026, intron 1 of 8)	41204.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120318682-2	chr8	120318582	120318782	+	736.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-90452.0	NR_110496	434353.0	Mm.411793	NR_110496	ENSMUSG00000097960	A330074K22Rik	-	RIKEN cDNA A330074K22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133479979-4	chr4	133479886	133480086	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175307)	promoter-TSS (NM_175307)	-147.0	NM_175307	100342.0	Mm.204656	NM_175307	ENSMUSG00000046694	Fam46b	4732473B16Rik|AU045678|AU046069	family with sequence similarity 46, member B	protein-coding	6.63564572196954	6.44817827390177	6.92602390476241	6.8806416643511	6.27762750678518	6.651033418522	6.10837358987772	6.40392734509451	-0.393250777802165	0.0552902233039714	0.345509543840811
Merged-chr4-120744360-1	chr4	120744260	120744460	+	572.0	f1_c57bl6.idr	intron (NM_001081142, intron 1 of 13)	intron (NM_001081142, intron 1 of 13)	2816.0	NM_001081142	60613.0	Mm.249977	NM_001081142	ENSMUSG00000028631	Kcnq4	-	potassium voltage-gated channel, subfamily Q, member 4	protein-coding	-0.349658509017406	0.433463742343134	-0.339166971833175	-0.343098774727849	-0.348680072182957	-0.332951366506097	0.280264540699321	-0.342410850657057	-0.445945220973073	0.864152079285417	1
Merged-chr12-113217487-3	chr12	113217369	113217569	+	749.311096	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31566.0	NM_153776	69195.0	Mm.313244	NM_153776	ENSMUSG00000049036	Tmem121	2410008J05Rik|Hole	transmembrane protein 121	protein-coding	0.560873238739494	0.596682948785351	1.34716647858122	0.57611216610582	1.47439466721478	0.599261471664701	1.36124822995013	1.07511155789114	1.52722083683431	0.357980415306528	0.855019712577517
Merged-chr17-26572100-3	chr17	26571983	26572183	+	946.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026170, intron 1 of 9)	intron (NM_026170, intron 1 of 9)	10571.0	NM_026170	67458.0	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-90267924-4	chr3	90267817	90268017	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356483, intron 2 of 27)	MIR3|SINE|MIR	1403.0	NM_201407	229541.0	Mm.30571	NM_201407	ENSMUSG00000042404	Dennd4b	-	DENN/MADD domain containing 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81009043-2	chr15	81008943	81009143	+	965.9285890000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_134091, intron 10 of 21)	intron (NM_134091, intron 10 of 21)	31278.0	NM_134091	105835.0	Mm.274943	NM_134091	ENSMUSG00000042303	Sgsm3	1810012I01Rik|AI428557|BB175482|Cip85|R75178|RUSC3|Rutbc3	small G protein signaling modulator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-50552183-5	chr16	50552086	50552286	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040379, intron 4 of 5)	MLTR11B|LTR|ERVK	23684.0	NR_040379	619312.0	Mm.427671	NR_040379		G730013B05Rik	linc-Cblb|linc1610	RIKEN cDNA G730013B05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-58589654-3	chr13	58589548	58589748	+	880.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022317, intron 1 of 17)	intron (NM_022317, intron 1 of 17)	21229.0	NM_022317	114304.0	Mm.18188	NM_022317	ENSMUSG00000021553	Slc28a3	Cnt3	solute carrier family 28 (sodium-coupled nucleoside transporter), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-85139111-2	chr11	85139011	85139211	+	859.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001029934, intron 1 of 33)	intron (NM_001029934, intron 1 of 33)	844.0	NM_001029934	237898.0	Mm.178524	NM_001029934	ENSMUSG00000000804	Usp32	2900074J03Rik|6430526O11Rik|AW045245	ubiquitin specific peptidase 32	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115163254-4	chr11	115163169	115163369	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_012030)	promoter-TSS (NM_012030)	-72.0	NM_012030	26941.0	Mm.27842	NM_012030	ENSMUSG00000020733	Slc9a3r1	EBP-50|NHE-RF|NHERF-1|NHERF1	solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-105175794-2	chr14	105175694	105175894	+	748.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_134077, intron 1 of 20)	intron (NM_134077, intron 1 of 20)	1533.0	NM_134077	74213.0	Mm.474531	NM_134077	ENSMUSG00000022119	Rbm26	1700009P03Rik|AI447318|C230097K14Rik|C86225|MLZ-393|Pro1777|Se70-2	RNA binding motif protein 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-99184802-2	chr4	99184712	99184912	+	718.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR30|LTR|ERV1	-9122.0	NM_175029	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	-0.417768713058454	-0.530278471801994	-0.532910904276508	-0.274973213734322	-0.306425950648662	-0.218584642328573	-0.532333017222445	-0.534570618861683	0.563614454687469	0.822233825160627	1
Merged-chr15-79718913-1	chr15	79718813	79719013	+	735.0	f1_balb.idr	intron (NM_013818, intron 10 of 11)	intron (NM_013818, intron 10 of 11)	23623.0	NM_194342	223697.0	Mm.202715	NM_194342	ENSMUSG00000042524	Sun2	B230369L08Rik|C030011B15|Unc84b	Sad1 and UNC84 domain containing 2	protein-coding	0.342050948789494	0.55802166280838	0.356637242951479	0.888083156500109	0.618437321913824	0.990676883977195	0.824328183929613	0.352117258586699	0.958220664026496	0.588126062990819	1
Merged-chr11-115629796-2	chr11	115629715	115629915	+	965.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-1520.0	NM_001252395	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97444332-3	chr6	97444219	97444419	+	856.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	14967.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-120073998-6	chr1	120073916	120074116	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019432)	promoter-TSS (NM_019432)	-236.0	NM_019432	170706.0	Mm.24750	NM_019432	ENSMUSG00000050777	Tmem37	AI173373|AW540203|Pr|Pr1	transmembrane protein 37	protein-coding	5.04162931262823	4.97411448718605	4.69019796631732	4.820169845557	5.20585605521608	4.82422939419377	4.77003632531622	4.49322768594385	-0.044203982258735	0.8955676473353	0.998431161219273
Merged-chr17-24673145-1	chr17	24673045	24673245	+	559.0	f1_balb.idr	intron (NM_001348231, intron 1 of 11)	intron (NM_001348231, intron 1 of 11)	3458.0	NM_183149	213753.0	Mm.219581	NM_183149	ENSMUSG00000041130	Zfp598	BC023040|Ntrap|Znf598	zinc finger protein 598	protein-coding	0.383021311556286	0.415020006982641	0.40470212179495	0.752941924980439	1.55896639852292	0.990634902090411	0.406990946910498	0.89859408614167	3.04569675983729	0.0926703965995757	0.470833409598029
Merged-chr8-84970446-2	chr8	84970351	84970551	+	776.833374	f1_balb.idr|f1_c57bl6.idr	exon (NM_011563, exon 3 of 6)	exon (NM_011563, exon 3 of 6)	829.0	NM_011563	21672.0	Mm.347009	NM_011563	ENSMUSG00000005161	Prdx2	AL022839|Band-8|NkefB|PRP|PrxII|TDX1|TPx|TPx-B|TR|TSA|Tdpx1|Torin	peroxiredoxin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115535113-4	chr5	115535003	115535203	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011223, intron 1 of 10)	intron (NM_011223, intron 1 of 10)	-24364.0	NM_007475	11837.0	Mm.5286	NM_007475	ENSMUSG00000067274	Rplp0	36B4|Arbp|L10E	ribosomal protein, large, P0	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101735167-4	chr11	101735113	101735313	+	918.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144831, intron 2 of 22)	URR1B|DNA|hAT-Charlie	2257.0	NM_144831	217207.0	Mm.28186	NM_144831	ENSMUSG00000034931	Dhx8	Ddx8|mDEAH6|mKIAA4096	DEAH (Asp-Glu-Ala-His) box polypeptide 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-20032654-2	chr4	20032554	20032754	+	702.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C2-int|LTR|ERVL-MaLR	-9398.0	NM_010281	14590.0	Mm.20461	NM_010281	ENSMUSG00000073987	Ggh	gamma-GH	gamma-glutamyl hydrolase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-65328841-4	chr18	65328761	65328961	+	926.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037294, intron 4 of 12)	MER5A1|DNA|hAT-Charlie	65027.0	NM_001037294	225638.0	Mm.296528	NM_001037294	ENSMUSG00000032845	Alpk2	Gm549|Hak	alpha-kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90582929-2	chr2	90582829	90583029	+	778.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-2282.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-61606995-4	chr8	61606902	61607102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293772, intron 10 of 21)	(CA)n|Simple_repeat|Simple_repeat	-15833.0	NM_001293774	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44493102-4	chr9	44492969	44493169	+	731.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357490, intron 1 of 7)	intron (NM_001357490, intron 1 of 7)	-6067.0	NM_030256	80288.0	Mm.370270	NM_030256	ENSMUSG00000063382	Bcl9l	B9L|BC003321|BCL9-2|DLNB11	B cell CLL/lymphoma 9-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-76366071-4	chr16	76365988	76366188	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173440, intron 1 of 3)	intron (NM_173440, intron 1 of 3)	6961.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91738253-2	chr2	91738153	91738353	+	599.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080754, intron 1 of 18)	intron (NM_001080754, intron 1 of 18)	8115.0	NM_001080754	228361.0	Mm.436667	NM_172669	ENSMUSG00000040506	Ambra1	2310079H06Rik|A130023A14|AA474864|AV021921|D030051N19Rik|mKIAA1736	autophagy/beclin 1 regulator 1	protein-coding	1.00952715592748	0.54364126713195	0.873165276037015	0.699707284782842	1.02034140620842	0.54558758060937	1.3349001700785	0.703089939739902	0.761450090319354	0.624219619641621	1
Merged-chr5-63875064-4	chr5	63874976	63875176	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029554, intron 1 of 3)	intron (NM_029554, intron 1 of 3)	62581.0	NM_029554	76261.0	Mm.38143	NM_029554	ENSMUSG00000060512	0610040J01Rik	AI662686	RIKEN cDNA 0610040J01 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-127446372-1	chr3	127446272	127446472	+	672.5	f1_balb.idr	intron (NM_001327938, intron 1 of 47)	intron (NM_001327938, intron 1 of 47)	-37314.0	NM_001327939	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	2.84664660207681	4.05303240231207	2.90353072033549	1.40709368626098	3.52422667174013	2.9186953505879	1.46749547167569	2.93284185146042	-0.374194866317793	0.790130277224287	0.998431161219273
Merged-chr11-97336446-2	chr11	97336299	97336499	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081220, exon 11 of 11)	exon (NM_001081220, exon 11 of 11)	15674.0	NM_001081220	217143.0	Mm.32622	NM_175453	ENSMUSG00000070337	Gpr179	5330439C02Rik|Gpr158l1	G protein-coupled receptor 179	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-73271883-2	chr2	73271783	73271983	+	823.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001005343)	promoter-TSS (NM_001005343)	-43.0	NM_001005343	381373.0	Mm.330293	NM_001005343	ENSMUSG00000068859	Sp9	-	trans-acting transcription factor 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70605543-2	chr14	70605443	70605643	+	754.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360028, intron 11 of 14)	intron (NM_001360028, intron 11 of 14)	-5708.0	NM_194345	239170.0	Mm.247582	NM_194345	ENSMUSG00000022095	Fam160b2	G430067P06Rik|Rai16	family with sequence similarity 160, member B2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80827013-4	chr10	80826912	80827112	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301034, intron 1 of 4)	CpG	316.0	NR_027656	100041965.0	Mm.328806	NR_027656		Oaz1-ps	Gm1823|Gm9786|Oaz-ps	ornithine decarboxylase antizyme 1, pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-52099089-1	chr1	52098989	52099189	+	590.0	f0_balb.idr	intron (NM_001308266, intron 17 of 24)	intron (NM_001308266, intron 17 of 24)	-20349.0	NM_001357627	20846.0	Mm.277406	NM_009283	ENSMUSG00000026104	Stat1	2010005J02Rik|AA408197	signal transducer and activator of transcription 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-153488359-2	chr1	153488259	153488459	+	711.833374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007842)	promoter-TSS (NM_007842)	-699.0	NM_007842	13211.0	Mm.20000	NM_007842	ENSMUSG00000042699	Dhx9	AI326842|Ddx9|HEL-5|NDHII|RHA|mHEL-5	DEAH (Asp-Glu-Ala-His) box polypeptide 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-23506042-3	chr16	23505946	23506146	+	711.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359083, intron 2 of 10)	intron (NM_001359083, intron 2 of 10)	14769.0	NM_008555	17174.0	Mm.1213	NM_008555	ENSMUSG00000022887	Masp1	AW048060|CCPII|Crarf|Masp1/3	mannan-binding lectin serine peptidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-134080268-5	chr1	134080185	134080385	+	853.099976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1130.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-106838068-2	chr4	106837968	106838168	+	719.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33061.0	NM_001347159	329910.0	Mm.222956	NM_025590	ENSMUSG00000034853	Acot11	1110020M10Rik|2010309H15Rik|AW060409|BFIT|BFIT1|Thea|Them1|mKIAA0707	acyl-CoA thioesterase 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-106231521-4	chr1	106231419	106231619	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133821, intron 1 of 16)	Lx7|LINE|L1	59650.0	NM_133821	98432.0	Mm.24115	NM_133821	ENSMUSG00000044340	Phlpp1	AI836256|Phlpp|Plekhe1|SCOP|mKIAA0606	PH domain and leucine rich repeat protein phosphatase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127016781-4	chr7	127016717	127016917	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001102563)	TTS (NM_001102563)	535.0	NM_030240	67278.0	Mm.345385	NM_030240	ENSMUSG00000107068	Pagr1a	2900092E17Rik|C77040|PA1|PAGR1	PAXIP1 associated glutamate rich protein 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118357412-2	chr11	118357312	118357512	+	633.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2001.0	NM_011594	21858.0	Mm.206505	NM_011594	ENSMUSG00000017466	Timp2	D11Bwg1104e|Timp-2	tissue inhibitor of metalloproteinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-26015376-4	chr18	26015275	26015475	+	965.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-261218.0	NM_001362334	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-126073898-4	chr2	126073802	126074002	+	996.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008008, intron 2 of 3)	intron (NM_008008, intron 2 of 3)	39244.0	NM_008008	14178.0	Mm.330557	NM_008008	ENSMUSG00000027208	Fgf7	Kgf	fibroblast growth factor 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-108659819-3	chr6	108659725	108659925	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011498)	promoter-TSS (NM_011498)	-804.0	NM_011498	20893.0	Mm.2436	NM_011498	ENSMUSG00000030103	Bhlhe40	Bhlhb2|C130042M06Rik|CR8|Clast5|Dec1|Sharp2|Stra13|Stra14	basic helix-loop-helix family, member e40	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124929707-2	chr5	124929607	124929807	+	703.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	67002.0	NM_001081750	269704.0	Mm.138617	NM_001081750	ENSMUSG00000079215	Zfp664	AW060232|D930038J03Rik|ZFOC1|Znf664	zinc finger protein 664	protein-coding	-2.18308165884198	-2.15547475440471	-2.16382331017202	-2.1706810624505	-2.18114370519566	-2.15366558754311	-2.03057248461154	-2.16945352807143	0.759018020146679	0.829933115115583	1
Merged-chr2-25460306-2	chr2	25460206	25460406	+	863.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_153557, exon 4 of 7)	exon (NM_153557, exon 4 of 7)	788.0	NM_153557	227622.0	Mm.261780	NM_153557	ENSMUSG00000047617	Paxx	D930050G13Rik	non-homologous end joining factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-79075230-4	chr3	79075113	79075313	+	921.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001099624, intron 19 of 23)	intron (NM_001099624, intron 19 of 23)	69674.0	NM_001310536	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-30968946-3	chr3	30968871	30969071	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001165954, intron 1 of 14)	CpG	444.0	NM_001165954	241915.0	Mm.233173	NM_153421	ENSMUSG00000037652	Phc3	E030046K01Rik|Edr3|Hph3	polyhomeotic 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-21717556-2	chr16	21717456	21717656	+	596.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22891.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-71419073-1	chr6	71418973	71419173	+	567.0	f0_balb.idr	intron (NM_001355745, intron 2 of 9)	intron (NM_001355745, intron 2 of 9)	21564.0	NM_001355745	68477.0	Mm.28474	NM_024288	ENSMUSG00000002222	Rmnd5a	1110007A06Rik|AJ237586|AW125795|Gid2|MTA.D02.090	required for meiotic nuclear division 5 homolog A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-68956730-3	chr9	68956620	68956820	+	719.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013646, intron 1 of 10)	intron (NM_013646, intron 1 of 10)	191374.0	NR_033299	320440.0	Mm.483129	NM_177159		9530091C08Rik	-	RIKEN cDNA 9530091C08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-53792224-2	chr1	53792124	53792324	+	803.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7009.0	NM_133810	98267.0	Mm.25559	NM_133810	ENSMUSG00000026094	Stk17b	3110009A03Rik|AI120141|Drak2	serine/threonine kinase 17b (apoptosis-inducing)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-120171191-2	chr14	120171091	120171291	+	784.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-104478.0	NM_207515	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166587872-2	chr2	166587772	166587972	+	718.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 21 of 39)	intron (NM_177782, intron 21 of 39)	23350.0	NR_152154	433503.0	Mm.491336	NR_152154		Gm29679	-	predicted gene, 29679	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-8736152-4	chr10	8736082	8736282	+	861.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 16 of 19)	L1MB2|LINE|L1	149888.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	1.83896749787052	2.1900064578437	1.84726862635862	2.58599963827217	1.57785576606722	1.92262543487883	1.49789742364571	2.36625733156478	-0.684873637178276	0.477264888526011	0.927980290875356
Merged-chr6-28135686-2	chr6	28135586	28135786	+	857.375	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361125)	promoter-TSS (NM_001361125)	-540.0	NM_001361125	14823.0	Mm.320732	NM_008174	ENSMUSG00000024211	Grm8	A230002O04|GluR8|Gprc1h|mGluR8	glutamate receptor, metabotropic 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-60910342-4	chr14	60910226	60910426	+	715.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	T-rich|Low_complexity|Low_complexity	125760.0	NR_040642	70478.0	Mm.274650	NM_027436	ENSMUSG00000021993	Mipep	5730405E07Rik|MIP	mitochondrial intermediate peptidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-45958717-4	chr19	45958608	45958808	+	920.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198296, intron 9 of 25)	intron (NM_198296, intron 9 of 25)	-39429.0	NR_152221	100174921.0	Mm.487206	NR_152221		4930505N22Rik	-	RIKEN cDNA 4930505N22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-51059346-4	chr11	51059244	51059444	+	834.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347495)	promoter-TSS (NM_001347495)	87.0	NM_001347495	21408.0	Mm.4792	NM_009329	ENSMUSG00000020364	Zfp354a	AW488485|Tcf17|Znf354a|kid1	zinc finger protein 354A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166652293-2	chr2	166652193	166652393	+	761.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	MIRb|SINE|MIR	61539.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-4769133-4	chr12	4769044	4769244	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361147)	promoter-TSS (NM_001361147)	123.0	NM_175431	207921.0	Mm.184898	NM_175431	ENSMUSG00000050545	Fam228b	A830093I24Rik	family with sequence similarity 228, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-123849539-2	chr8	123849440	123849640	+	766.666626	f0_balb.idr|f1_balb.idr	intron (NM_028536, intron 2 of 3)	RLTR17|LTR|ERVK	10669.0	NM_028536	73420.0	Mm.157746	NM_028536	ENSMUSG00000031971	Ccsap	1700054N08Rik|AI853424	centriole, cilia and spindle associated protein	protein-coding	2.36719627594098	1.42017880599542	3.48730020985683	2.37794743611249	3.94664848462735	2.22574404624631	1.3770422258956	3.57954019636006	0.871986302855775	0.554381735359601	0.959914380895535
Merged-chr10-62793288-2	chr10	62793188	62793388	+	838.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026201)	promoter-TSS (NM_026201)	-920.0	NM_026201	67500.0	Mm.196371	NM_026201	ENSMUSG00000020074	Ccar1	2610511G16Rik|9430036H15Rik|Carp1	cell division cycle and apoptosis regulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-29380606-3	chr7	29380509	29380709	+	634.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081028, intron 9 of 22)	L1ME3Cz|LINE|L1	76604.0	NM_013874	29861.0	Mm.101885	NM_013874	ENSMUSG00000030584	Dpf1	Neud4	D4, zinc and double PHD fingers family 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-102585666-3	chr4	102585564	102585764	+	724.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019840, intron 6 of 14)	intron (NM_019840, intron 6 of 14)	-1894.0	NM_001177982	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-138527996-4	chr3	138527889	138528089	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007917, intron 2 of 7)	CpG	721.0	NM_001313980	13684.0	Mm.3941	NM_007917	ENSMUSG00000028156	Eif4e	EG668879|Eif4e-ps|If4e|eIF-4E	eukaryotic translation initiation factor 4E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-92963714-3	chr13	92963658	92963858	+	768.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-109546.0	NR_036451	100502942.0	Mm.441946	NM_177623	ENSMUSG00000114382	Gm4814	C920025J10|EG218444	predicted gene 4814	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-17339782-3	chr19	17339682	17339882	+	998.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001136484)	promoter-TSS (NM_001136484)	-277.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	3.58740029817686	3.01135881147028	3.57629139673611	3.28691825800041	4.2760170227661	4.7321550955808	4.10828380306859	3.92835299518949	1.27127740816011	0.00816011069258622	0.0941046695648425
Merged-chr1-91052349-3	chr1	91052262	91052462	+	926.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111312, intron 1 of 12)	intron (NM_001111312, intron 1 of 12)	-1082.0	NM_001111311	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135067313-4	chr4	135067209	135067409	+	808.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53336.0	NM_019732	12399.0	Mm.378894	NM_019732	ENSMUSG00000070691	Runx3	AML2|Cbfa3|Pebp2a3	runt related transcription factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-136186934-4	chr5	136186836	136187036	+	860.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025774, intron 5 of 5)	intron (NM_025774, intron 5 of 5)	12018.0	NM_025774	66801.0	Mm.425295	NM_025774	ENSMUSG00000039737	Prkrip1	8430424D23Rik|C114	Prkr interacting protein 1 (IL11 inducible)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-35269249-2	chr12	35269194	35269394	+	726.75	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74397.0	NR_030449	751520.0		NR_030449	ENSMUSG00000076253	Mir680-3	Mirn680-3	microRNA 680-3	ncRNA	1.83167670738076	2.04508300748517	2.10102042143258	2.41535413490353	1.84591965205361	1.29308476671984	1.99320492284736	2.16014454717492	-0.674528235909594	0.489001994121252	0.933747362143254
Merged-chr17-26009678-4	chr17	26009565	26009765	+	896.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162868, intron 5 of 13)	intron (NM_001162868, intron 5 of 13)	12195.0	NM_153140	215445.0	Mm.41191	NM_153140	ENSMUSG00000037098	Rab11fip3	Cart1|D030060O14Rik|Rab11-FIP3|mKIAA0665	RAB11 family interacting protein 3 (class II)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-30344083-3	chr5	30343985	30344185	+	853.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033460, intron 2 of 15)	intron (NM_001033460, intron 2 of 15)	2422.0	NM_001033460	381738.0	Mm.389604	NM_001033460	ENSMUSG00000073102	Drc1	Ccdc164|Gm1060|b2b1654Clo	dynein regulatory complex subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-86948694-2	chr10	86948594	86948794	+	766.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_138673, intron 17 of 68)	L2a|LINE|L2	59248.0	NM_138673	192188.0	Mm.279611	NM_138673	ENSMUSG00000035459	Stab2	FEEL-2|FELL|MFEEL-2|STAB-2	stabilin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-154907972-4	chr4	154907884	154908084	+	846.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8941.0	NM_025582	66469.0	Mm.41868	NM_025582	ENSMUSG00000029059	Fam213b	2810405K02Rik|AI836168|PM/PGFS	family with sequence similarity 213, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-9492285-4	chr18	9492190	9492390	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CAGGA)n|Simple_repeat|Simple_repeat	-42136.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-134194317-2	chr1	134194217	134194417	+	894.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357515, intron 2 of 10)	intron (NM_001357515, intron 2 of 10)	869.0	NM_016749	53311.0	Mm.379067	NM_016749	ENSMUSG00000042451	Mybph	AI385643|MyBP-H	myosin binding protein H	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-57052320-3	chr18	57052226	57052426	+	944.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-76947.0	NM_029909	77422.0	Mm.256874	NM_029909	ENSMUSG00000024592	C330018D20Rik	AU018666	RIKEN cDNA C330018D20 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-145253186-4	chr7	145252975	145253175	+	892.0773929999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_132642)	TTS (NR_132642)	30936.0	NR_132644	233979.0	Mm.102235	NM_146206	ENSMUSG00000048677	Tpcn2	D830047E22Rik|Gm35086	two pore segment channel 2	protein-coding	0.973319484533166	1.07446089069874	1.82573432299512	0.812200706012794	1.49368731743495	1.58144678442768	1.74622324909864	0.81436088684093	0.736486877051068	0.587125156957619	0.967957151188163
Merged-chr4-141031226-2	chr4	141031126	141031326	+	865.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145958, intron 19 of 35)	intron (NM_001145958, intron 19 of 35)	20589.0	NM_008546	17150.0	Mm.7386	NM_008546	ENSMUSG00000060572	Mfap2	AI893631|Magp|Magp1	microfibrillar-associated protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-84941652-2	chr15	84941552	84941752	+	999.166626	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_016714, exon 8 of 8)	3' UTR (NM_016714, exon 8 of 8)	9971.0	NR_037206	100526461.0		NR_037206	ENSMUSG00000080441	Mir1249	mir-1249|mmu-mir-1249	microRNA 1249	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-16507581-4	chr11	16507500	16507700	+	961.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011343, intron 1 of 3)	intron (NM_011343, intron 1 of 3)	884.0	NM_011343	20335.0	Mm.325350	NM_011343	ENSMUSG00000078974	Sec61g	-	SEC61, gamma subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-60281848-2	chr10	60281748	60281948	+	969.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_011179, intron 1 of 14)	intron (NM_011179, intron 1 of 14)	-2613.0	NM_001146124	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-24786619-1	chr12	24786519	24786719	+	720.0	f0_balb.idr	Intergenic	MTD|LTR|ERVL-MaLR	-44980.0	NM_026037	67216.0	Mm.167671	NM_026037	ENSMUSG00000020646	Mboat2	2810049G06Rik|AU022889|AW547221|LPCAT4|Moact2|Oact2	membrane bound O-acyltransferase domain containing 2	protein-coding	1.81494172314482	1.916050044364	1.12283630831042	1.6605938418998	1.93219647545331	1.15017264553999	1.99022422099652	2.51458740780936	0.933084924949145	0.403934730441042	0.889123345574356
Merged-chr6-28621691-4	chr6	28621597	28621797	+	918.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019776, intron 10 of 23)	intron (NM_019776, intron 10 of 23)	141349.0	NM_019776	56463.0	Mm.439987	NM_019776	ENSMUSG00000001424	Snd1	AL033314|Tudor-SN	staphylococcal nuclease and tudor domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-71238131-4	chr10	71238027	71238227	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009360)	promoter-TSS (NM_009360)	-83.0	NM_009360	21780.0	Mm.229292	NM_009360	ENSMUSG00000003923	Tfam	AI661103|Hmgts|mtTFA|tsHMG	transcription factor A, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-40237327-2	chr6	40237227	40237427	+	607.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001004182, intron 2 of 2)	intron (NM_001004182, intron 2 of 2)	-88151.0	NM_023538	69923.0	Mm.32840	NM_023538	ENSMUSG00000029916	Agk	2610037M15Rik|6720408I04Rik|AI465370|Mulk	acylglycerol kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140618781-2	chr5	140618623	140618823	+	999.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	11382.0	NM_008494	16848.0	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-54072797-4	chr11	54072711	54072911	+	806.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3794.0	NM_019417	30794.0	Mm.21830	NM_019417	ENSMUSG00000020388	Pdlim4	Ril	PDZ and LIM domain 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-40859012-2	chr9	40858844	40859044	+	618.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	G-rich|Low_complexity|Low_complexity	-15183.0	NM_178245	244813.0	Mm.261652	NM_178245	ENSMUSG00000054360	Bsx	Bsx1a|Bsx1b	brain specific homeobox	protein-coding	1.3963933019503	1.06498210301674	1.03407176159319	2.59735318171475	1.84977622750199	2.64435912914643	1.04101764046737	2.61194118043574	1.08402759566354	0.369488297422079	0.863370668489374
Merged-chr6-56716306-2	chr6	56716206	56716406	+	680.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030235, intron 1 of 15)	intron (NM_030235, intron 1 of 15)	1401.0	NM_030235	78937.0	Mm.105343	NM_030235	ENSMUSG00000029787	Avl9	5830411G16Rik|D730049P16Rik|mKIAA0241	AVL9 cell migration associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-85896278-2	chr1	85896178	85896378	+	886.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_022417, intron 1 of 5)	intron (NM_022417, intron 1 of 5)	1768.0	NM_022417	64294.0	Mm.29870	NM_022417	ENSMUSG00000026223	Itm2c	3110038L02Rik|BRI3|Bricd2c|E25|E25C|ITM3	integral membrane protein 2C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115697979-2	chr11	115697879	115698079	+	871.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001313936, intron 2 of 5)	RMER15|LTR|ERVL	1555.0	NM_001313937	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-47118757-2	chr15	47118657	47118857	+	738.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	495452.0	NR_045811	75281.0	Mm.159487	NR_045811	ENSMUSG00000051198	4930548G14Rik	-	RIKEN cDNA 4930548G14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-27316191-2	chr3	27316091	27316291	+	692.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009425)	promoter-TSS (NM_009425)	-886.0	NM_009425	22035.0	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-39578695-4	chr1	39578596	39578796	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1349.0	NM_001033135	67702.0	Mm.28614	NM_001033135	ENSMUSG00000048234	Rnf149	1600023E10Rik|AV037261|C76763|Gm15832|Greul4	ring finger protein 149	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-36583502-2	chr5	36583402	36583602	+	663.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113362, intron 2 of 14)	intron (NM_001113362, intron 2 of 14)	-1105.0	NM_133910	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-75628193-1	chr6	75628093	75628293	+	554.0	f1_c57bl6.idr	Intergenic	ORR1A2-int|LTR|ERVL-MaLR	-1614284.0	NR_155299	74342.0	Mm.292568	NM_028880	ENSMUSG00000060780	Lrrtm1	4632401D06Rik|AW125451	leucine rich repeat transmembrane neuronal 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-113141527-4	chr12	113141417	113141617	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347443, intron 1 of 6)	intron (NM_001347443, intron 1 of 6)	912.0	NM_001347443	68337.0	Mm.133825	NM_024223	ENSMUSG00000006356	Crip2	0610010I23Rik|AW743261|C77570|CRP2|CRP4|Crp|ESP1|Hlp	cysteine rich protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-106802541-4	chr5	106802343	106802543	+	772.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-105613.0	NM_026856	52397.0	Mm.249474	NM_026856	ENSMUSG00000049606	Zfp644	1110068L01Rik|AA408882|BM-005|D5Ertd689e|Zep-2	zinc finger protein 644	protein-coding	0.00869326715561214	0.027908762892957	0.366078533747974	0.769320206402749	0.00990111596876225	0.682458610614873	0.0230281604228357	0.0176397909834176	-0.719998128374904	0.744476722587155	1
Merged-chr16-91462888-4	chr16	91462774	91462974	+	985.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-2230.0	NR_077219	100503120.0	Mm.387130	NR_077219	ENSMUSG00000084866	A930006K02Rik	-	RIKEN cDNA A930006K02 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-113613988-2	chr5	113613888	113614088	+	614.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001359060, exon 5 of 5)	exon (NM_001359060, exon 5 of 5)	29615.0	NM_001359060	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-12044757-4	chr5	12044657	12044857	+	955.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	126714.0	NM_001177510	545732.0	Mm.389066	NM_001177510	ENSMUSG00000067848	4933402N22Rik	-	RIKEN cDNA 4933402N22 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-8629444-4	chr15	8629389	8629589	+	999.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	81318.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24707017-2	chr17	24706911	24707111	+	999.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145396, intron 1 of 21)	B1_Mus2|SINE|Alu	642.0	NM_145396	213773.0	Mm.100353	NM_145396	ENSMUSG00000040688	Tbl3	9430070M15Rik	transducin (beta)-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-106892048-4	chr9	106891964	106892164	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029103)	promoter-TSS (NM_029103)	-126.0	NM_029103	74840.0	Mm.29778	NM_029103	ENSMUSG00000032575	Manf	3230402M22Rik|AA407711|AA408789|AA673178|Armet|D17914|D18Mgi17	mesencephalic astrocyte-derived neurotrophic factor	protein-coding	7.27331588102514	6.83235740847357	7.34053552092067	7.0083886976312	6.96220042476413	6.74043443360332	7.05919699837375	6.78108430084119	-0.251488615529528	0.160011457877759	0.619962585021748
Merged-chr18-66476532-4	chr18	66476431	66476631	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17927.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	-0.294083384950798	-0.277963382818132	0.430175288204581	-0.287290034214969	-0.293070061983337	-0.276782190008417	0.44311158986884	-0.286577643912737	0.0410571026119648	0.987250810110592	1
Merged-chr2-29416819-2	chr2	29416719	29416919	+	642.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290489, intron 2 of 6)	intron (NM_001290489, intron 2 of 6)	38305.0	NM_001290490	68975.0	Mm.330109	NM_026896	ENSMUSG00000026799	Med27	1500015J03Rik|2310042P07Rik|AA682045|Crsp8|D2Ertd434e	mediator complex subunit 27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-8049514-2	chr14	8049414	8049614	+	705.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_025341, intron 6 of 8)	intron (NM_025341, intron 6 of 8)	-30799.0	NM_001348727	109729085.0	Mm.210048	NM_001348727		Htd2	-	hydroxyacyl-thioester dehydratase type 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-115847639-4	chr4	115847586	115847786	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285487, intron 2 of 14)	intron (NM_001285487, intron 2 of 14)	8488.0	NM_001355174	17346.0	Mm.209327	NM_021461	ENSMUSG00000028708	Mknk1	2410048M24Rik|Mnk1	MAP kinase-interacting serine/threonine kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-51579211-2	chr11	51579111	51579311	+	630.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153393, intron 27 of 28)	intron (NM_153393, intron 27 of 28)	-5546.0	NM_028398	72947.0	Mm.256875	NM_028398	ENSMUSG00000020359	Phykpl	2900006B13Rik|Agxt2l2	5-phosphohydroxy-L-lysine phospholyase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-125172987-2	chr5	125172887	125173087	+	623.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253905, intron 1 of 42)	intron (NM_001253905, intron 1 of 42)	6227.0	NM_001253905	20602.0	Mm.278646	NM_011424	ENSMUSG00000029478	Ncor2	N-CoR|SMRT|SMRTe	nuclear receptor co-repressor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-29612134-2	chr4	29612034	29612234	+	568.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5b|LINE|L1	544055.0	NR_151693	102634169.0		NR_151693		Gm11917	-	predicted gene 11917	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-14826912-4	chr17	14826802	14827002	+	998.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175173, intron 24 of 24)	intron (NM_175173, intron 24 of 24)	116222.0	NM_175173	71682.0	Mm.122698	NM_175173	ENSMUSG00000046991	Wdr27	0610012K18Rik	WD repeat domain 27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-20656294-2	chr10	20656194	20656394	+	622.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013875, intron 1 of 12)	L1_Mus2|LINE|L1	68784.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5849996-4	chr19	5849904	5850104	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_026169)	TTS (NM_026169)	-4524.0	NR_003513	66961.0	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-8664727-4	chr3	8664630	8664830	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010423, exon 5 of 5)	exon (NM_010423, exon 5 of 5)	2308.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-111035837-4	chr9	111035736	111035936	+	956.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008522, intron 14 of 16)	intron (NM_008522, intron 14 of 16)	16544.0	NM_008522	17002.0	Mm.282359	NM_008522	ENSMUSG00000032496	Ltf	Csp82|Lf|MMS10R|Ms10r	lactotransferrin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-62849096-2	chr4	62848996	62849196	+	563.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-116478.0	NM_028326	72701.0	Mm.26479	NM_028326	ENSMUSG00000028358	Zfp618	2810031P15Rik|2810040O04Rik|AI415580|AI505139|D430033D05Rik|Nedd10|Znf618|bM257P7.1	zinc finger protein 618	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-21848388-4	chr14	21848325	21848525	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_176925, exon 1 of 3)	5' UTR (NM_176925, exon 1 of 3)	485.0	NM_026965	69156.0	Mm.11827	NM_026965	ENSMUSG00000021773	Comtd1	1810030M08Rik|MT773	catechol-O-methyltransferase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-136570747-4	chr1	136570655	136570855	+	955.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54146.0	NM_177643	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-31331949-4	chr15	31331863	31332063	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027496, intron 1 of 3)	MLT1A0|LTR|ERVL-MaLR	35796.0	NM_001357923	67434.0	Mm.102470	NM_026153	ENSMUSG00000022237	Ankrd33b	0610012A05Rik|3021401C12Rik|5730557B15Rik	ankyrin repeat domain 33B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-4593028-4	chr12	4592946	4593146	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001198968)	promoter-TSS (NM_001198968)	38.0	NM_001198968	20403.0	Mm.341204	NM_011365	ENSMUSG00000020640	Itsn2	AI327390|Ese2|Sh3d1B|Sh3p18|mKIAA1256	intersectin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-56232166-2	chr8	56232066	56232266	+	770.583374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62386.0	NM_008278	15446.0	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	-0.307604108213443	-0.359583210494481	-0.528485669666434	-0.167881644605475	-0.533311557723547	-0.355606500868424	-0.527906685661249	-0.53014852946841	-2.20298773776613	0.376236050802868	1
Merged-chr11-120579873-3	chr11	120579772	120579972	+	862.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133796, intron 3 of 5)	intron (NM_133796, intron 3 of 5)	1748.0	NM_133796	192662.0	Mm.30016	NM_133796	ENSMUSG00000025132	Arhgdia	5330430M07Rik|Gdi-1|Rho-GDI|RhoDGI|RhoGDI-1	Rho GDP dissociation inhibitor (GDI) alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-62393310-2	chr15	62393162	62393362	+	635.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-173811.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	-1.2087802031865	-1.18255559123277	-1.1934648774972	-1.20242609004962	-1.0572203610596	-0.684244446803552	-1.19099525421168	-1.20082203728721	2.61682731156801	0.42085555974408	1
Merged-chr9-121717927-2	chr9	121717827	121718027	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR11B|LTR|ERVK	-1254.0	NM_010918	18087.0	Mm.32842	NM_010918	ENSMUSG00000032525	Nktr	5330401F18Rik|D9Wsu172e	natural killer tumor recognition sequence	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56561911-2	chr17	56561811	56562011	+	578.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB3|LINE|L1	-7524.0	NR_130128	100504425.0	Mm.384143	NR_130128	ENSMUSG00000110218	Gm20219	Tincr	predicted gene, 20219	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97357792-3	chr11	97357689	97357889	+	964.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4762.0	NM_138657	192157.0	Mm.34339	NM_138657	ENSMUSG00000038485	Socs7	2310063P06Rik|C85125|Nap4	suppressor of cytokine signaling 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117553443-2	chr8	117553343	117553543	+	735.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172285, intron 2 of 32)	L1MB8|LINE|L1	55168.0	NM_172285	234779.0	Mm.192699	NM_172285	ENSMUSG00000034330	Plcg2	PLC-gamma-2|PLCgamma2|Plcg-2	phospholipase C, gamma 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-121753198-1	chr11	121753098	121753298	+	560.0	f0_balb.idr	Intergenic	L1MEg|LINE|L1	50771.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-57239301-4	chr2	57239220	57239420	+	838.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010274, intron 1 of 16)	intron (NM_010274, intron 1 of 16)	938.0	NM_010274	14571.0	Mm.3711	NM_010274	ENSMUSG00000026827	Gpd2	AA408484|AI448216|AU021455|AW494132|GPDH|Gdm1|Gpd-m|Gpdh-m|TISP38	glycerol phosphate dehydrogenase 2, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-46888642-2	chr17	46888542	46888742	+	839.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1979.0	NM_178385	72726.0	Mm.33780	NM_178385	ENSMUSG00000036430	Tbcc	2810055C19Rik	tubulin-specific chaperone C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-97963593-2	chr15	97963485	97963685	+	885.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252153)	promoter-TSS (NM_001252153)	-644.0	NM_001356508	380967.0	Mm.196630	NM_201359	ENSMUSG00000052369	Tmem106c	AI046681|BC046621|D15Ertd405e	transmembrane protein 106C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5783758-2	chr17	5783658	5783858	+	684.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14899.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-59292760-4	chr10	59292670	59292870	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30526.0	NM_001316371	18451.0	Mm.2212	NM_011030	ENSMUSG00000019916	P4ha1	AL022634|P4ha	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45698589-2	chr7	45698489	45698689	+	784.400024	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1378.0	NM_009800	12348.0	Mm.27736	NM_009800	ENSMUSG00000003273	Car11	Ca11	carbonic anhydrase 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-129472171-4	chr6	129471996	129472196	+	929.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020008, intron 1 of 5)	intron (NM_020008, intron 1 of 5)	683.0	NM_001309637	56644.0	Mm.239516	NM_020008	ENSMUSG00000079293	Clec7a	BGR|Clecsf12|beta-GR	C-type lectin domain family 7, member a	protein-coding	3.92622400970855	4.3161062777287	4.33988240743368	3.60340296534173	4.23843681475	3.36063199616195	4.09324186599482	3.91065002043807	-0.173258173904514	0.708965774342815	0.998431161219273
Merged-chr4-62519072-2	chr4	62518972	62519172	+	863.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008525, intron 1 of 11)	intron (NM_008525, intron 1 of 11)	837.0	NM_001276446	17025.0	Mm.6988	NM_008525	ENSMUSG00000028393	Alad	ALADH|Lv	aminolevulinate, delta-, dehydratase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21034027-2	chr9	21033927	21034127	+	830.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008319, intron 3 of 10)	B2_Mm1t|SINE|B2	-1699.0	NR_035438	100316681.0		NR_035438	ENSMUSG00000084663	Mir1900	Mirn1900|mmu-mir-1900	microRNA 1900	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127626653-4	chr10	127626615	127626815	+	721.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-5567.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-156684238-3	chr1	156684131	156684331	+	998.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145413, intron 7 of 7)	LTR41B|LTR|ERVL	-9892.0	NM_023141	30935.0	Mm.206737	NM_023141	ENSMUSG00000060519	Tor3a	Adir	torsin family 3, member A	protein-coding	1.80260988908508	2.03035624249848	1.55969563282859	1.72669566903795	2.84307323627942	2.70619768243512	1.79083537653851	3.10720174653157	2.14502801586857	0.0164551461835576	0.154805680013323
Merged-chr7-67221329-2	chr7	67221229	67221429	+	666.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_131043)	TTS (NR_131043)	1129.0	NR_131044	76628.0	Mm.384589	NR_131043	ENSMUSG00000097527	1700112J16Rik	-	RIKEN cDNA 1700112J16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-84450885-2	chr10	84450785	84450985	+	773.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10414.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-30174777-1	chr6	30174677	30174877	+	554.0	f1_balb.idr	promoter-TSS (NR_126541)	promoter-TSS (NR_126541)	-652.0	NR_126541	101447999.0		NR_126540		Mirc35hg	-	microRNA cluster 35, host gene	ncRNA	1.97392840500781	1.00990196253992	1.4208948539054	2.17525617214363	2.21260530663549	1.01468285253674	1.86998697378149	0.974123311522771	-0.23488521188325	0.855333874224673	0.998431161219273
Merged-chr15-58988977-4	chr15	58988873	58989073	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144800, intron 3 of 14)	intron (NM_144800, intron 3 of 14)	55163.0	NM_023172	66218.0	Mm.322294	NM_023172	ENSMUSG00000022354	Ndufb9	1190008J14Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-38129226-2	chr1	38129152	38129352	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_001359288, intron 1 of 25)	CpG	414.0	NM_001359287	56210.0	Mm.389103	NM_019570	ENSMUSG00000026082	Rev1	1110027I23Rik|AU022044|Rev1l	REV1, DNA directed polymerase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141734481-1	chr4	141734381	141734581	+	1000.0	f1_balb.idr	Intergenic	Intergenic	-11062.0	NM_001017966	68817.0	Mm.393721	NM_001017966	ENSMUSG00000078515	Ddi2	1110056G13Rik|1700027M01Rik|9130022E05Rik|AI604911|AU040698	DNA-damage inducible protein 2	protein-coding	-1.39239040096365	-1.50706362993767	-1.51637061241093	-1.52401564492204	-1.25712099376264	-1.5050467680107	-1.51426371558223	-1.52264718775774	0.640753741356348	0.855918148133186	1
Merged-chr11-59526876-4	chr11	59526773	59526973	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14696.0	NM_001359638	216799.0	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-111049931-2	chr14	111049831	111050031	+	660.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	-294782.0	NM_175499	239250.0	Mm.49728	NM_175499	ENSMUSG00000045871	Slitrk6	4832410J21Rik|Sltk6	SLIT and NTRK-like family, member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-8842518-2	chr10	8842418	8842618	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 2 of 19)	ORR1F|LTR|ERVL-MaLR	43552.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	-0.256837128346309	0.472691066307558	-0.247594545775273	0.0509214021290974	-0.110641466650144	-0.242068236210379	-0.0668944750010165	-0.250463768845	-1.97732415239025	0.389711671673629	1
Merged-chr7-67973640-4	chr7	67973541	67973741	+	872.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010513, intron 1 of 20)	intron (NM_010513, intron 1 of 20)	21384.0	NM_010513	16001.0	Mm.275742	NM_010513	ENSMUSG00000005533	Igf1r	A330103N21Rik|CD221|D930020L01|IGF-1R|hyft	insulin-like growth factor I receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118783387-2	chr9	118783287	118783487	+	852.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 2 of 13)	intron (NM_001113514, intron 2 of 13)	71695.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117453220-4	chr8	117453137	117453337	+	829.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_106045)	TTS (NR_106045)	214.0	NR_106045	102466801.0		NR_106045	ENSMUSG00000099062	Mir7077	Gm27774|mmu-mir-7077	microRNA 7077	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88140974-5	chr3	88140872	88141072	+	835.049988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1400.0	NM_001310593	17261.0	Mm.28184	NM_133665	ENSMUSG00000001419	Mef2d	C80750	myocyte enhancer factor 2D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-11421219-1	chr8	11421119	11421319	+	540.0	f1_balb.idr	exon (NM_009932, exon 22 of 48)	exon (NM_009932, exon 22 of 48)	-56710.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-146216775-2	chr3	146216675	146216875	+	913.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4186.0	NM_022983	65086.0	Mm.155520	NM_022983	ENSMUSG00000036832	Lpar3	Edg7|lpA3	lysophosphatidic acid receptor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-30603621-2	chr16	30603521	30603721	+	664.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_177632)	TTS (NM_177632)	3898.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-145113476-2	chr5	145113376	145113576	+	794.333313	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023142)	promoter-TSS (NM_023142)	-780.0	NM_023142	11867.0	Mm.30010	NM_023142	ENSMUSG00000029622	Arpc1b	41kDa|AA408064|AA408534|AA571392|AF007010|AW208418|L72|SOP2Hs|p41-ARC	actin related protein 2/3 complex, subunit 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-79991235-2	chr10	79991135	79991335	+	783.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007725, intron 1 of 6)	intron (NM_007725, intron 1 of 6)	2635.0	NM_007725	12798.0	Mm.157770	NM_007725	ENSMUSG00000004665	Cnn2	AA408047|AI324678|Calpo2	calponin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-123992781-2	chr4	123992764	123992964	+	752.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	75431.0	NM_017475	54170.0	Mm.220922	NM_017475	ENSMUSG00000028646	Rragc	AU041672|Gtr2|RAGC|TIB929|YGR163W	Ras-related GTP binding C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-126693570-3	chr3	126693468	126693668	+	896.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025438, intron 3 of 18)	intron (NM_001025438, intron 3 of 18)	96617.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	0.536652688250142	0.534216418602989	0.195188120498867	0.191025118920441	0.723127809560395	0.541480989070364	0.196380383996395	0.347738481993206	0.66419056816603	0.725143456765043	1
Merged-chr4-140964217-4	chr4	140964122	140964322	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355515, intron 1 of 7)	intron (NM_001355515, intron 1 of 7)	2951.0	NM_023374	67680.0	Mm.246965	NM_023374	ENSMUSG00000009863	Sdhb	0710008N11Rik	succinate dehydrogenase complex, subunit B, iron sulfur (Ip)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-50499580-4	chr17	50499466	50499666	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9981.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	4.65094201494164	5.07125195942154	4.26165021943172	4.72444147897342	4.65042853764949	3.99835273273079	5.02812403134395	4.0377573803381	-0.251314763963645	0.530163769961682	0.950119915711771
Merged-chr5-135188147-4	chr5	135188067	135188267	+	904.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011714, intron 1 of 18)	CpG	844.0	NM_011714	22385.0	Mm.40331	NM_011714	ENSMUSG00000002748	Baz1b	C87820|WSTF|Wbscr9	bromodomain adjacent to zinc finger domain, 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-14888749-4	chr8	14888627	14888827	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_012000, exon 1 of 3)	5' UTR (NM_012000, exon 1 of 3)	191.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-46457927-4	chr11	46457825	46458025	+	930.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134250, intron 2 of 6)	RMER6B|LTR|ERVK	2994.0	NM_134250	171285.0	Mm.72168	NM_134250	ENSMUSG00000020399	Havcr2	TIM-3|Tim3|Timd3	hepatitis A virus cellular receptor 2	protein-coding	4.3694763772585	4.39328652508005	3.82442521151102	3.64231313589619	4.4019263411243	4.42304226669265	3.19510321980317	2.49234577448993	-0.318788409354717	0.570051374993704	0.962718661854691
Merged-chr6-125572671-4	chr6	125572585	125572785	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011708, intron 6 of 51)	MTD|LTR|ERVL-MaLR	19737.0	NM_011708	22371.0	Mm.22339	NM_011708	ENSMUSG00000001930	Vwf	6820430P06Rik|AI551257|B130011O06Rik|C630030D09|F8VWF|VWD	Von Willebrand factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171841569-3	chr1	171841481	171841681	+	831.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289470, intron 2 of 8)	L1_Mur3|LINE|L1	1884.0	NM_013489	12523.0	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	0.956755735275856	1.33755266297627	1.05551831092341	0.57070413866761	0.966173133418587	0.589055154000236	0.579847475625855	1.13879981587729	-0.8130511442291	0.609934650128961	1
Merged-chr19-40641049-4	chr19	40640967	40641167	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304721, intron 1 of 9)	intron (NM_001304721, intron 1 of 9)	-18703.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	4.38991748695155	3.17300953199576	2.75465903955345	4.67131072105511	4.2677866905573	4.49693184574396	3.32788924551627	4.18403704310615	0.194369415904753	0.727528114223614	0.998431161219273
Merged-chr6-136814926-4	chr6	136814860	136815060	+	822.035706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021714, intron 11 of 11)	B2_Mm1a|SINE|B2	6712.0	NM_177688	232440.0	Mm.154564	NM_177688	ENSMUSG00000060032	H2afj	E130307C13	H2A histone family, member J	protein-coding	-0.107097726420687	-0.157750305796657	-0.175598342799677	-0.327553734081444	-0.330719281717809	-0.321641213988482	-0.171663491732976	0.0377774586392071	0.0632003451613538	0.977539578665127	1
Merged-chr6-134249806-1	chr6	134249706	134249906	+	693.0	f1_balb.idr	intron (NM_001303102, intron 6 of 8)	intron (NM_001303102, intron 6 of 8)	-146523.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	-0.532365659618099	-0.520508115661955	-0.524394128653399	-0.527391467530869	-0.531625847281699	-0.519631989014496	0.0620851848823235	0.0188566127009971	3.50063436475084	0.199206547313492	1
Merged-chr15-59552654-4	chr15	59552572	59552772	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026746, intron 4 of 6)	intron (NM_026746, intron 4 of 6)	-95982.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-119754850-3	chr13	119754775	119754975	+	727.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175538, intron 1 of 3)	intron (NM_175538, intron 1 of 3)	1007.0	NM_175538	245269.0	Mm.403943	NM_175538	ENSMUSG00000095930	Nim1k	E130304F04Rik|Nim1	NIM1 serine/threonine protein kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-81033074-2	chr3	81032974	81033174	+	672.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3342.0	NM_019971	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-110667442-4	chr9	110667376	110667576	+	851.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028312, intron 1 of 6)	intron (NM_028312, intron 1 of 6)	10973.0	NM_028312	72654.0	Mm.249115	NM_028312	ENSMUSG00000019659	Ccdc12	2700094L05Rik|C76605	coiled-coil domain containing 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127640240-2	chr10	127640140	127640340	+	770.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2746.0	NM_009284	20852.0	Mm.121721	NM_009284	ENSMUSG00000002147	Stat6	-	signal transducer and activator of transcription 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-18425410-2	chr16	18425310	18425510	+	924.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111062, intron 1 of 5)	MER67A|LTR|ERV1	-1007.0	NM_001353143	26462.0	Mm.390906	NM_013711	ENSMUSG00000075704	Txnrd2	AA118373|ESTM573010|TGR|Tr3|Trxr2|Trxrd2	thioredoxin reductase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-89182532-5	chr15	89182434	89182634	+	801.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_027081, exon 20 of 20)	3' UTR (NM_027081, exon 20 of 20)	-1746.0	NM_138749	140570.0	Mm.267514	NM_138749	ENSMUSG00000036606	Plxnb2	Debt|plexin-B2	plexin B2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101848090-4	chr7	101847984	101848184	+	969.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303239, intron 2 of 5)	ORR1B1|LTR|ERVL-MaLR	-2753.0	NM_008035	14276.0	Mm.439666	NM_008035	ENSMUSG00000032725	Folr2	FBP2|FR-P3|FR-beta|Folbp-2|Folbp2	folate receptor 2 (fetal)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-90020300-4	chr5	90020184	90020384	+	968.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-136950.0	NM_001081401	330119.0	Mm.133062	NM_177872	ENSMUSG00000043635	Adamts3	1100001H14Rik|6330442E02Rik	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 3	protein-coding	3.0736568117519	2.92972583601147	3.47726918607969	3.06448354784055	3.43158148900368	2.8171939899085	2.57712603382311	3.53309595659526	0.0169633346259634	0.978347617693078	0.998431161219273
Merged-chr6-70793477-2	chr6	70793377	70793577	+	629.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1302.0	NM_009075	19895.0	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-59393366-4	chr2	59393261	59393461	+	960.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MDa|LINE|L1	-6679.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-15054643-2	chr2	15054543	15054743	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029466)	promoter-TSS (NM_029466)	229.0	NM_001165941	74455.0	Mm.478923	NM_028950	ENSMUSG00000026707	Nsun6	4933403D21Rik|4933414E04Rik|NOPD1	NOL1/NOP2/Sun domain family member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70608403-4	chr8	70608316	70608516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133772)	promoter-TSS (NM_133772)	-102.0	NM_133772	76900.0	Mm.6667	NM_133772	ENSMUSG00000070003	Ssbp4	1210002E11Rik|AW743380|Sspb4	single stranded DNA binding protein 4	protein-coding	4.48192756219879	4.36337200659974	3.46995113075482	4.27253204962604	4.44203640896654	4.50433680374298	3.49854083799836	4.01439623863477	-0.0407977338179323	0.92891947287075	0.998431161219273
Merged-chr6-84027821-4	chr6	84027731	84027931	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310152, intron 1 of 53)	intron (NM_001310152, intron 1 of 53)	8445.0	NM_021469	26903.0	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-79450369-3	chr8	79450266	79450466	+	845.2666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50898.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-7227491-4	chr9	7227391	7227591	+	834.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	42986.0	NM_029775	76863.0	Mm.27293	NM_029775	ENSMUSG00000032002	Dcun1d5	3110001A18Rik|4833420K19Rik|AW060460|D430047L21Rik	DCN1, defective in cullin neddylation 1, domain containing 5 (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53025123-2	chr4	53025023	53025223	+	563.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	13243.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141491105-4	chr7	141491002	141491202	+	979.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252588, intron 4 of 7)	intron (NM_001252588, intron 4 of 7)	14722.0	NM_001252588	64540.0	Mm.489619	NM_053082	ENSMUSG00000025511	Tspan4	AI325509|AI746565|D130042I01Rik|NAG-2|Tm4sf7|Tspan-4	tetraspanin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-32513516-4	chr14	32513425	32513625	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081221)	promoter-TSS (NM_001081221)	4.0	NM_001081221	319955.0	Mm.318310	NM_001081221	ENSMUSG00000054051	Ercc6	4732403I04|C130058G22Rik|CSB	excision repair cross-complementing rodent repair deficiency, complementation group 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118693417-2	chr9	118693317	118693517	+	615.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 14 of 27)	intron (NM_133721, intron 14 of 27)	-18275.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-4570536-4	chr2	4570430	4570630	+	907.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177844, intron 2 of 11)	intron (NM_001177844, intron 2 of 11)	10776.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-119984656-2	chr9	119984556	119984756	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153287)	promoter-TSS (NM_153287)	86.0	NM_153287	215418.0	Mm.491094	NM_153287	ENSMUSG00000032515	Csrnp1	4931429D10Rik|Axud1|CSRNP-1|URAX1|taip-3	cysteine-serine-rich nuclear protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-83265477-2	chr17	83265377	83265577	+	560.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50194.0	NM_134117	106522.0	Mm.311974	NM_134117	ENSMUSG00000024247	Pkdcc	AI115348|AW548124|Adtk1|ESTM17|MAd1|Sgk493|Vlk|X83346	protein kinase domain containing, cytoplasmic	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90742970-2	chr2	90742870	90743070	+	550.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2400.0	NM_018828	55935.0	Mm.489638	NM_018828	ENSMUSG00000008200	Fnbp4	FBP30|Fnbp30|mKIAA1014	formin binding protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-189807127-2	chr1	189807040	189807240	+	611.700012	f0_c57.idr|f1_c57bl6.idr	intron (NM_008976, intron 3 of 18)	intron (NM_008976, intron 3 of 18)	78872.0	NM_008976	19250.0	Mm.4498	NM_008976	ENSMUSG00000026604	Ptpn14	C130080N23Rik|PTP36	protein tyrosine phosphatase, non-receptor type 14	protein-coding	1.09931408177512	1.53742529364361	1.67496163551085	1.69993238434968	0.621193928885424	0.667580100486539	0.652868245343099	0.640032534801287	-4.96409107150312	0.0014608368919913	0.0265027031705316
Merged-chr16-76202196-6	chr16	76202146	76202346	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	79633.0	NR_040575	78215.0	Mm.243885	NR_040575		4930578N18Rik	-	RIKEN cDNA 4930578N18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16005165-3	chr7	16005060	16005260	+	947.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5665.0	NM_001081418	243842.0	Mm.440249	NM_001081418	ENSMUSG00000070808	Bicra	Gltscr1	BRD4 interacting chromatin remodeling complex associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-31724637-2	chr5	31724537	31724737	+	593.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_181281, intron 2 of 10)	RMER19B|LTR|ERVK	26587.0	NM_144541	107976.0	Mm.482126	NM_144541	ENSMUSG00000052139	Babam2	6030405P19Rik|AI429776|B830038C02Rik|Bre	BRISC and BRCA1 A complex member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-31728292-2	chr5	31728192	31728392	+	666.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_181281, intron 2 of 10)	intron (NM_181281, intron 2 of 10)	30242.0	NM_144541	107976.0	Mm.482126	NM_144541	ENSMUSG00000052139	Babam2	6030405P19Rik|AI429776|B830038C02Rik|Bre	BRISC and BRCA1 A complex member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-87935916-2	chr3	87935816	87936016	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177663, intron 2 of 3)	MTEa-int|LTR|ERVL-MaLR	5602.0	NM_177663	229504.0	Mm.45744	NM_177663	ENSMUSG00000048039	Isg20l2	4930429N24|C80587	interferon stimulated exonuclease gene 20-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-43060266-1	chr17	43060166	43060366	+	557.0	f0_balb.idr	intron (NM_178589, intron 3 of 5)	intron (NM_178589, intron 3 of 5)	43711.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	0.561232374797693	0.400249445769785	0.385247992370258	0.373345517888677	1.50026701809279	0.403568426817421	0.639959379092811	1.9556263847319	4.21046529337419	0.0145840155959661	0.142259365138538
Merged-chr2-128711017-4	chr2	128710910	128711110	+	877.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 1 of 18)	intron (NM_008587, intron 1 of 18)	12095.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80826440-4	chr10	80826348	80826548	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027656)	promoter-TSS (NR_027656)	-208.0	NM_001301034	18245.0	Mm.398119	NM_008753	ENSMUSG00000035242	Oaz1	AZ-1|AZ1|Antizyme|ODC-Az|Oaz	ornithine decarboxylase antizyme 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134743156-2	chr6	134743056	134743256	+	618.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_130447, intron 3 of 6)	(TG)n|Simple_repeat|Simple_repeat	-49204.0	NR_151454	105242798.0	Mm.398227	NR_151454		1700055D16Rik	-	RIKEN cDNA 1700055D16 gene	ncRNA	-0.763339390105054	-0.754439415669837	-0.757368659583561	-0.759619767360511	-0.622930767526324	-0.405519287150544	-0.756723704471147	-0.345267940326325	3.08610516496955	0.258592882717496	1
Merged-chr4-141268588-2	chr4	141268488	141268688	+	575.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-9851.0	NR_151527	100503810.0		NR_151527	ENSMUSG00000085395	Gm13056	-	predicted gene 13056	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-29628879-2	chr2	29628779	29628979	+	790.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_054050, intron 1 of 23)	intron (NM_054050, intron 1 of 23)	9159.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-116456488-2	chr7	116456388	116456588	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F2|SINE|Alu	-13030.0	NM_011083	18704.0	Mm.3810	NM_011083	ENSMUSG00000030660	Pik3c2a	Cpk-m|PI3KC2	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31380464-4	chr14	31380351	31380551	+	993.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347585, intron 3 of 7)	intron (NM_001347585, intron 3 of 7)	37226.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-38452440-2	chr15	38452340	38452540	+	808.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38107.0	NR_105916	102465574.0		NR_105916	ENSMUSG00000099110	Mir6951	Gm27765|mmu-mir-6951	microRNA 6951	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-85299550-1	chr1	85299450	85299650	+	636.0	f1_balb.idr	Intergenic	B2_Mm2|SINE|B2	-28984.0	NM_001037909	620078.0	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik	RIKEN cDNA C130026I21 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-86999806-2	chr3	86999734	86999934	+	587.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007639)	promoter-TSS (NM_007639)	-494.0	NM_007639	12479.0	Mm.1894	NM_007639	ENSMUSG00000028076	Cd1d1	AI747460|CD1.1|Cd1a|Cd1d|Ly-38	CD1d1 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118584938-2	chr9	118584838	118585038	+	800.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21771.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55831314-2	chr19	55831214	55831414	+	680.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_138565, intron 4 of 15)	intron (NR_138565, intron 4 of 15)	-64007.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-61659635-2	chr11	61659535	61659735	+	580.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027817, intron 1 of 4)	intron (NM_027817, intron 1 of 4)	6314.0	NM_027817	71520.0	Mm.202760	NM_027817	ENSMUSG00000004837	Grap	8430435N19Rik|BB233594	GRB2-related adaptor protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152548172-4	chr1	152548076	152548276	+	981.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 8 of 17)	MTEb|LTR|ERVL-MaLR	77041.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-5575928-1	chr3	5575828	5576028	+	1000.0	f0_balb.idr	intron (NM_008994, intron 1 of 5)	CpG	320.0	NM_001163301	19302.0	Mm.132336	NM_008994	ENSMUSG00000040374	Pex2	D3Ertd138e|PAF-1|PMP35|Pxmp3	peroxisomal biogenesis factor 2	protein-coding	3.42741327815379	2.70361904153953	4.0967194366478	2.9262813753419	2.79295348650104	3.36554729618287	3.9732950107232	3.15162673590805	-0.0284932667111175	0.963637103221719	0.998431161219273
Merged-chr10-78585869-2	chr10	78585769	78585969	+	628.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_027875, exon 8 of 8)	exon (NM_027875, exon 8 of 8)	6095.0	NM_027875	71709.0	Mm.86439	NM_027875	ENSMUSG00000032714	Syde1	1200008N06Rik|BB043000|mSYD1A	synapse defective 1, Rho GTPase, homolog 1 (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-53004263-2	chr2	53004163	53004363	+	570.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	RLTR14_RN|LTR|ERV1	146395.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-170165101-4	chr1	170165011	170165211	+	984.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133806, intron 2 of 10)	MTEa|LTR|ERVL-MaLR	9853.0	NM_133806	107652.0	Mm.27969	NM_133806	ENSMUSG00000026670	Uap1	AA420407|AA437972|AGX-1|AGX-2|AGX1|AgX|ESTM38|SPAG2	UDP-N-acetylglucosamine pyrophosphorylase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-173879433-3	chr1	173879328	173879528	+	947.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170853, intron 2 of 9)	intron (NM_001170853, intron 2 of 9)	759.0	NM_001170853	100040462.0	Mm.463437	NM_001170853	ENSMUSG00000090272	Mndal	Gm2785|Ifi212	myeloid nuclear differentiation antigen like	protein-coding	3.96397719452259	4.24406107805378	3.97306029190882	4.16970657458967	4.19547305508615	4.75251627174389	4.88692205706612	2.88922605131557	0.367733478382293	0.454688912653762	0.919120493489568
Merged-chr1-43828633-2	chr1	43828517	43828717	+	566.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026430)	promoter-TSS (NM_026430)	-909.0	NM_026430	67883.0	Mm.387202	NM_026430	ENSMUSG00000057363	Uxs1	1600025I13Rik|AI451869|AI649125|AW550562	UDP-glucuronate decarboxylase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-164417395-2	chr2	164417295	164417495	+	670.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12235.0	NM_001252563	17183.0	Mm.29428	NM_013592	ENSMUSG00000016995	Matn4	matrilin-4	matrilin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107564827-2	chr9	107564727	107564927	+	568.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019742, intron 2 of 2)	intron (NM_019742, intron 2 of 2)	1572.0	NM_019742	80385.0	Mm.21739	NM_019742	ENSMUSG00000010054	Tusc2	1190001E22Rik|AA407686|Fus1|Lgcc|PAP|Pdap2	tumor suppressor candidate 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-35073121-2	chr16	35073021	35073221	+	567.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023587, intron 3 of 6)	L1MB7|LINE|L1	50700.0	NM_023587	70757.0	Mm.27286	NM_023587	ENSMUSG00000035376	Hacd2	6330408J20Rik|AI255777|AI481689|Hcad2|Ptplb	3-hydroxyacyl-CoA dehydratase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-120812259-3	chr10	120812186	120812386	+	781.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177092, intron 5 of 6)	intron (NM_177092, intron 5 of 6)	-45343.0	NR_038023	100504616.0	Mm.451174	NR_038023	ENSMUSG00000087480	Gm15910	-	predicted gene 15910	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-110538450-5	chr13	110538425	110538625	+	905.7666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	143481.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-173767040-4	chr1	173766943	173767143	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008329)	promoter-TSS (NM_008329)	-124.0	NM_008329	15951.0	Mm.261270	NM_008329	ENSMUSG00000073489	Ifi204	Ifi16|p204	interferon activated gene 204	protein-coding	6.48232818246336	6.75737888038602	7.31814940990423	6.87622426037126	7.50569365043132	7.5313053884295	7.85644614689109	7.45308727317386	0.741119234281249	8.11015130877462e-05	0.00261881245273532
Merged-chr10-19551797-4	chr10	19551689	19551889	+	824.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40160.0	NM_010511	15979.0	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-34854648-2	chr18	34854548	34854748	+	874.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-6559.0	NM_007913	13653.0	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-28726117-2	chr15	28726017	28726217	+	666.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	522351.0	NM_133365	110082.0	Mm.248464	NM_133365	ENSMUSG00000022262	Dnah5	AU022615|Dnahc5|Mdnah5|b2b1134Clo|b2b1154Clo|b2b1537Clo|b2b1565Clo|b2b3491Clo|b2b601Clo|mKIAA1603	dynein, axonemal, heavy chain 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-84562368-3	chr2	84562272	84562472	+	883.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-55499.0	NR_046046	672763.0	Mm.491046	NR_046046	ENSMUSG00000087362	Gm13710	-	predicted gene 13710	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-84437757-4	chr1	84437669	84437869	+	802.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152915, intron 8 of 12)	intron (NM_152915, intron 8 of 12)	-153124.0	NM_001003948	98496.0	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4|P-CLI1	phosphotyrosine interaction domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80986216-2	chr10	80986116	80986316	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038655, intron 2 of 3)	L1MB5|LINE|L1	15149.0	NM_001038655	14708.0	Mm.222496	NM_010319	ENSMUSG00000048240	Gng7	AI840417	guanine nucleotide binding protein (G protein), gamma 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126832107-4	chr8	126832015	126832215	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16905.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-145304244-1	chr6	145304144	145304344	+	805.0	f0_c57.idr	Intergenic	RSINE1|SINE|B4	53692.0	NR_045598	100039495.0	Mm.121014	NR_045598	ENSMUSG00000086013	Gm15706	-	predicted gene 15706	ncRNA	3.5065120759136	2.30266182214898	2.78483984051573	2.31728298881411	3.85487273326899	2.49536314025809	2.23934022274901	2.47392622366487	0.227868144483601	0.771181962736297	0.998431161219273
Merged-chr19-42639730-4	chr19	42639609	42639809	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26903.0	NM_053083	67573.0	Mm.178767	NM_053083	ENSMUSG00000025185	Loxl4	4833426I20Rik|Loxc	lysyl oxidase-like 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-105064606-2	chr5	105064506	105064706	+	922.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A0|LTR|ERVL-MaLR	-11045.0	NM_029509	76074.0	Mm.458519	NM_029509	ENSMUSG00000034438	Gbp8	5830443L24Rik|mGBP8	guanylate-binding protein 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141713814-4	chr4	141713710	141713910	+	889.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001017966, intron 1 of 9)	RLTR30D2_MM|LTR|ERV1	9609.0	NM_001017966	68817.0	Mm.393721	NM_001017966	ENSMUSG00000078515	Ddi2	1110056G13Rik|1700027M01Rik|9130022E05Rik|AI604911|AU040698	DNA-damage inducible protein 2	protein-coding	3.28258457634826	3.5049802830832	3.70664435727673	3.73716808358613	2.73562894771001	3.08757249076559	4.1489895308708	3.69149303041108	-0.0571316233534776	0.919953595338066	0.998431161219273
Merged-chr8-10849712-4	chr8	10849661	10849861	+	973.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32693.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-103777582-3	chr14	103777481	103777681	+	986.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	66120.0	NM_007904	13618.0	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-108890938-4	chr3	108890847	108891047	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177091)	promoter-TSS (NM_177091)	-939.0	NM_001165965	320181.0	Mm.244233	NM_177091	ENSMUSG00000045326	Fndc7	E230011A21Rik	fibronectin type III domain containing 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-56294576-4	chr8	56294474	56294674	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008278)	promoter-TSS (NM_008278)	22.0	NM_008278	15446.0	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	4.15566302296003	3.34340915291821	4.25777057970635	2.70791667526119	1.22983582829072	1.44840503976158	1.38323913918314	3.64548988731547	-2.15633436695197	0.235179770865899	0.731386965587429
Merged-chr11-116615350-1	chr11	116615250	116615450	+	704.75	f0_balb.idr	intron (NM_172572, intron 1 of 18)	intron (NM_172572, intron 1 of 18)	8902.0	NM_001167680	217344.0	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166964988-3	chr2	166964890	166965090	+	821.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_111895)	promoter-TSS (NR_111895)	-273.0	NR_111895	20853.0	Mm.73276	NM_011490	ENSMUSG00000039536	Stau1	5830401L18Rik|AW549911|C85792|Stau	staufen double-stranded RNA binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-38871919-2	chr6	38871819	38872019	+	680.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_010433, intron 1 of 14)	intron (NM_010433, intron 1 of 14)	4271.0	NM_010433	15258.0	Mm.23790	NM_010433	ENSMUSG00000061436	Hipk2	1110014O20Rik|B230339E18Rik|Stank	homeodomain interacting protein kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127278122-2	chr10	127278022	127278222	+	540.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001190454, exon 12 of 14)	exon (NM_001190454, exon 12 of 14)	10896.0	NM_001347171	110962.0	Mm.372826	NM_033072	ENSMUSG00000025409	Mbd6	D10Wsu93e	methyl-CpG binding domain protein 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-25256132-4	chr8	25256008	25256208	+	856.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50162.0	NR_040352	74489.0	Mm.256468	NR_040352	ENSMUSG00000110140	5430421F17Rik	-	RIKEN cDNA 5430421F17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-13007008-1	chr18	13006908	13007108	+	540.0	f1_c57bl6.idr	promoter-TSS (NM_153087)	promoter-TSS (NM_153087)	18.0	NM_153087	225192.0	Mm.207073	NM_153087	ENSMUSG00000037346	Hrh4	AXOR35|BG26|GPCR105|GPRv53|H4|H4R|HH4R	histamine receptor H4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-23211232-3	chr11	23211135	23211335	+	888.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44806.0	NM_001035226	103573.0	Mm.217547	NM_134014	ENSMUSG00000020290	Xpo1	AA420417|Crm1|Exp1	exportin 1	protein-coding	1.68714503072434	2.03068383516034	1.10016588053643	2.4252921987268	2.09451755650933	1.9147254856247	1.34401312432322	1.30970863609132	-0.530500378333784	0.634172018575953	0.982417279970648
Merged-chr14-77912308-2	chr14	77912208	77912408	+	693.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029495, intron 1 of 11)	MIRc|SINE|MIR	8069.0	NM_029495	108670.0	Mm.68134	NM_029495	ENSMUSG00000022014	Epsti1	2310046K10Rik|5033415K03Rik|BRESI1	epithelial stromal interaction 1 (breast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81847968-2	chr15	81847868	81848068	+	909.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_020507)	TTS (NM_020507)	10358.0	NM_020507	57259.0	Mm.323595	NM_020507	ENSMUSG00000048546	Tob2	2900090N22Rik|4930545K18Rik|AV071822|mKIAA1663	transducer of ERBB2, 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-13524298-4	chr13	13524171	13524371	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66138.0	NM_010748	17101.0	Mm.342337	NM_010748	ENSMUSG00000019726	Lyst	D13Sfk13|beige|bg	lysosomal trafficking regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-63827934-2	chr5	63827841	63828041	+	993.5833130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_029554, intron 1 of 3)	intron (NM_029554, intron 1 of 3)	15446.0	NM_029554	76261.0	Mm.38143	NM_029554	ENSMUSG00000060512	0610040J01Rik	AI662686	RIKEN cDNA 0610040J01 gene	protein-coding	1.72500090799323	2.25215712210953	1.05731627062793	1.92581269049688	1.37028490422193	1.83473841465914	1.63317062369325	1.25598656878955	-0.855815245147348	0.449519698134701	0.915783612300828
Merged-chr17-15774888-3	chr17	15774762	15774962	+	794.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	51724.0	NM_178615	68799.0	Mm.293466	NM_178615	ENSMUSG00000048027	Rgmb	1110059F19Rik|DRAGON	repulsive guidance molecule family member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-113639343-2	chr13	113639243	113639443	+	614.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20779.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-145117049-4	chr5	145116957	145117157	+	947.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023142, intron 1 of 9)	intron (NM_023142, intron 1 of 9)	2801.0	NM_023142	11867.0	Mm.30010	NM_023142	ENSMUSG00000029622	Arpc1b	41kDa|AA408064|AA408534|AA571392|AF007010|AW208418|L72|SOP2Hs|p41-ARC	actin related protein 2/3 complex, subunit 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-25833010-4	chr17	25832900	25833100	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_019719, exon 1 of 7)	5' UTR (NM_019719, exon 1 of 7)	361.0	NM_019719	56424.0	Mm.277599	NM_019719	ENSMUSG00000039615	Stub1	0610033N24Rik|2210017D18Rik|2310040B03Rik|AW046544|Chip	STIP1 homology and U-Box containing protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47328976-4	chr17	47328863	47329063	+	890.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001097623, intron 13 of 19)	intron (NM_001097623, intron 13 of 19)	-39924.0	NM_001146212	64657.0	Mm.216250	NM_183086	ENSMUSG00000034729	Mrps10	1110038B19Rik|AW743084|Rpms10	mitochondrial ribosomal protein S10	protein-coding	1.94579667963574	2.46284001398475	2.50036148644344	2.94429314309866	2.32893915457074	2.6044328635885	1.93914783171627	2.64375613743076	-0.229995582872332	0.77615140766422	0.998431161219273
Merged-chr13-113499111-2	chr13	113499011	113499211	+	556.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045501, intron 1 of 6)	intron (NR_045501, intron 1 of 6)	3733.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-74350216-4	chr13	74350118	74350318	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023281)	promoter-TSS (NM_023281)	22.0	NM_023281	66945.0	Mm.158231	NM_023281	ENSMUSG00000021577	Sdha	1500032O14Rik|2310034D06Rik|4921513A11|C81073|FP|SDH2|SDHF	succinate dehydrogenase complex, subunit A, flavoprotein (Fp)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-39324835-2	chr5	39324735	39324935	+	544.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	278739.0	NR_045416	75095.0	Mm.332354	NR_045416	ENSMUSG00000106741	4930513D17Rik	-	RIKEN cDNA 4930513D17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-163403318-2	chr1	163403218	163403418	+	635.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178883, intron 1 of 4)	intron (NM_178883, intron 1 of 4)	351.0	NR_132627	98376.0	Mm.32901	NM_178883	ENSMUSG00000040124	Gorab	NTKL-BP1|SCYL1-BP1|Scyl1bp1	golgin, RAB6-interacting	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-62229315-4	chr1	62229168	62229368	+	995.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081050, intron 13 of 22)	intron (NM_001081050, intron 13 of 22)	-93159.0	NR_151537	105243940.0		NR_151537		Pard3bos2	Gm12747	par-3 family cell polarity regulator beta, opposite strand 2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-5063321-2	chr7	5063221	5063421	+	961.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205231, intron 1 of 11)	intron (NM_001205231, intron 1 of 11)	1178.0	NM_001205231	22185.0	Mm.360389	NM_133671	ENSMUSG00000030435	U2af2	65kDa	U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35167722-2	chr17	35167622	35167822	+	753.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2845.0	NM_020027	53761.0	Mm.272462	NM_020027	ENSMUSG00000024393	Prrc2a	3110039B05Rik|Bat-2|Bat2|D17H6S51E|G2|Wbp12|mKIAA4178	proline-rich coiled-coil 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-75991048-4	chr2	75990939	75991139	+	996.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001081033)	TTS (NM_001081033)	-9072.0	NM_030188	78802.0	Mm.282339	NM_030188	ENSMUSG00000075271	Ttc30a1	4930506L13Rik	tetratricopeptide repeat domain 30A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-22566361-3	chr8	22566261	22566461	+	673.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011394, intron 10 of 10)	MIR|SINE|MIR	27452.0	NM_001198998	22335.0	Mm.227704	NM_011696	ENSMUSG00000008892	Vdac3	-	voltage-dependent anion channel 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-44026459-4	chr16	44026359	44026559	+	985.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359085, intron 5 of 16)	L1M4|LINE|L1	1486.0	NM_001172107	207798.0	Mm.19316	NM_153528	ENSMUSG00000036292	Gramd1c	4921521N14Rik	GRAM domain containing 1C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-22054932-4	chr9	22054851	22055051	+	982.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001310759)	TTS (NM_001310759)	-2928.0	NM_010487	15571.0	Mm.390167	NM_010487	ENSMUSG00000003410	Elavl3	2600009P04Rik|Huc|PLE21|mHuC	ELAV like RNA binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-55368620-4	chr12	55368530	55368730	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025373, intron 4 of 6)	intron (NM_025373, intron 4 of 6)	-15592.0	NM_001310583	26443.0	Mm.30210	NM_011968	ENSMUSG00000021024	Psma6	IOTA	proteasome (prosome, macropain) subunit, alpha type 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-118353656-2	chr2	118353556	118353756	+	614.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_201367, intron 1 of 2)	intron (NM_201367, intron 1 of 2)	19763.0	NM_201367	381413.0	Mm.70979	NM_201367	ENSMUSG00000040133	Gpr176	Gm1012	G protein-coupled receptor 176	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118473128-2	chr11	118473028	118473228	+	660.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER21B|LTR|ERV1	-3704.0	NM_172573	217364.0	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-72286560-3	chr2	72286457	72286657	+	980.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023057, intron 1 of 19)	intron (NM_023057, intron 1 of 19)	856.0	NM_178084	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-21567380-4	chr5	21567272	21567472	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028977, intron 2 of 3)	intron (NM_028977, intron 2 of 3)	23845.0	NM_028977	74511.0	Mm.439963	NM_028977	ENSMUSG00000039883	Lrrc17	37kDa|4833425M04Rik|6130400C22Rik|P37nb	leucine rich repeat containing 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-42692789-4	chr7	42692692	42692892	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001008427)	promoter-TSS (NM_001008427)	-74.0	NM_001008427	434179.0	Mm.284947	NM_001008427	ENSMUSG00000069727	Zfp975	EG434179|Gm5595|mszf88	zinc finger protein 975	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-115997119-4	chr3	115997040	115997240	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023214, intron 2 of 10)	U6|snRNA|snRNA	10266.0	NM_023214	66500.0	Mm.34550	NM_023214	ENSMUSG00000054414	Slc30a7	1810059J10Rik|2610034N15Rik|4833428C12Rik|AI467242|ZnT-7|ZnT7|Zntl2	solute carrier family 30 (zinc transporter), member 7	protein-coding	4.56168512331047	4.61167421874777	4.04730787059184	4.81573564212106	4.17078432346131	4.9638987263061	3.92860925052944	4.6040070363866	-0.088381190446459	0.827370028247341	0.998431161219273
Merged-chr3-8916497-4	chr3	8916410	8916610	+	997.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025434, intron 1 of 2)	intron (NM_025434, intron 1 of 2)	7347.0	NM_025434	66230.0	Mm.38460	NM_025434	ENSMUSG00000040269	Mrps28	1500012D08Rik|AW061224	mitochondrial ribosomal protein S28	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-40616600-4	chr9	40616503	40616703	+	872.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69361.0	NM_133733	71566.0	Mm.280560	NM_133733	ENSMUSG00000032024	Clmp	9030425E11Rik|ACAM|ASP5|AW557819	CXADR-like membrane protein	protein-coding	3.62250942463911	3.19341003034513	4.33483601031499	3.74675751921926	3.71814978959638	3.85578706445912	4.63543847569301	4.46875801532625	0.597656295412068	0.220587440108568	0.711835678575402
Merged-chr10-58231943-2	chr10	58231843	58232043	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081954, exon 1 of 1)	exon (NM_001081954, exon 1 of 1)	732.0	NM_001081954	664783.0	Mm.482575	NM_001081954		Dux	AW822073|Dux4|Duxbl|EG664783	double homeobox	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-12318090-2	chr17	12317990	12318190	+	842.3333130000001	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045290)	promoter-TSS (NR_045290)	570.0	NM_011948	26407.0	Mm.28587	NM_011948	ENSMUSG00000014426	Map3k4	D17Rp17|D17Rp17e|MAPKKK4|MEKK 4|MTK1|Mek4b|Mekk4|RP17|Rp17a|Tas|mKIAA0213	mitogen-activated protein kinase kinase kinase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-21180129-7	chr13	21180021	21180221	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_009054, exon 1 of 8)	5' UTR (NM_009054, exon 1 of 8)	190.0	NM_009054	19720.0	Mm.314056	NM_009054	ENSMUSG00000021326	Trim27	AW538890|Gm19403|Rfp	tripartite motif-containing 27	protein-coding	3.74284239084091	3.97482092544	4.04515466340015	4.25729391428873	4.30064028038355	4.00294343374888	3.54605899999899	3.43486849697854	-0.197379642080385	0.674458845044799	0.99440487726309
Merged-chr7-19801822-2	chr7	19801722	19801922	+	585.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-5013.0	NM_023224	80794.0	Mm.81698	NM_023224	ENSMUSG00000040525	Cblc	2310076I21Rik|2310079L19Rik|Cbl3	Casitas B-lineage lymphoma c	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-79087178-2	chr11	79087078	79087278	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013571, intron 1 of 17)	intron (NM_013571, intron 1 of 17)	-27342.0	NM_001348207	16706.0	Mm.4745	NM_013571	ENSMUSG00000018334	Ksr1	AW492498|B-KSR1|D11Bhm183e|D11Bhm184e|Ksr|RSU2|hb|mKSR1	kinase suppressor of ras 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-76266898-3	chr6	76266808	76267008	+	906.1333619999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	-975569.0	NR_155299	74342.0	Mm.292568	NM_028880	ENSMUSG00000060780	Lrrtm1	4632401D06Rik|AW125451	leucine rich repeat transmembrane neuronal 1	protein-coding	-1.36015291771705	-1.32842431658676	-1.33874579108173	-1.34722415754512	-1.35969949349639	-1.32618761000664	-1.33640923549635	-0.791042329471244	2.42373733289067	0.484013421080845	1
Merged-chr6-128992938-3	chr6	128992839	128993039	+	925.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015455)	promoter-TSS (NR_015455)	-22.0	NR_015455	408064.0	Mm.172429	NR_015455		BC064078	-	cDNA sequence BC064078	ncRNA	1.95370979767151	2.8377093364881	2.36660855812797	1.54997524149958	2.68821345417208	1.64579591685233	2.26641212380827	2.19643733702479	-0.0212843039391051	0.981492187846677	0.998431161219273
Merged-chr1-7090903-2	chr1	7090803	7091003	+	925.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_183028, intron 1 of 5)	intron (NM_183028, intron 1 of 5)	1983.0	NM_183028	319263.0	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139399535-2	chr5	139399435	139399635	+	681.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028469, intron 2 of 4)	intron (NM_028469, intron 2 of 4)	-6852.0	NM_177000	319772.0	Mm.440271	NM_177000	ENSMUSG00000044092	C130050O18Rik	-	RIKEN cDNA C130050O18 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-116167026-2	chr3	116166926	116167126	+	666.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-37338.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-56927144-2	chr9	56927044	56927244	+	616.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_175483, exon 1 of 2)	5' UTR (NM_175483, exon 1 of 2)	1227.0	NM_175483	235406.0	Mm.191459	NM_175483	ENSMUSG00000032733	Snx33	E130307J07Rik|Sh3px3	sorting nexin 33	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-147418944-4	chr5	147418838	147419038	+	856.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033625, intron 1 of 2)	intron (NR_033625, intron 1 of 2)	318.0	NR_033625	100039805.0	Mm.394705	NR_033625	ENSMUSG00000106820	D5Ertd605e	Gm2433	DNA segment, Chr 5, ERATO Doi 605, expressed	ncRNA	0.112576126963648	0.129838922969469	0.124176356832048	0.642615740044995	0.113651885696343	0.622269434125699	0.302411407583847	0.649471400681255	1.15917097036454	0.571909030747619	1
Merged-chr10-40314753-3	chr10	40314658	40314858	+	924.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12570.0	NM_009665	11702.0	Mm.253533	NM_009665	ENSMUSG00000075232	Amd1	AdoMetDC|Amd-1|SAMDC|SAMDC 1|adoMetDC1	S-adenosylmethionine decarboxylase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-45560593-1	chr17	45560493	45560693	+	826.0	f1_balb.idr	exon (NM_001304956, exon 5 of 6)	exon (NM_001304956, exon 5 of 6)	-3343.0	NM_001357105	73836.0	Mm.289716	NM_028662	ENSMUSG00000037089	Slc35b2	1110003M08Rik|AA407792|AI842275|PAPST1|Slc35b1	solute carrier family 35, member B2	protein-coding	0.57693297750368	0.113802392189913	0.107659456046008	0.102910209231292	0.0961830360355268	0.315950475004062	0.894778281421549	0.417923950877226	1.52834595667924	0.453801867285737	1
Merged-chr1-86669635-2	chr1	86669535	86669735	+	564.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_010933, intron 2 of 2)	CpG	938.0	NM_010933	18159.0	Mm.12802	NM_010933	ENSMUSG00000026241	Nppc	CNP|lbab	natriuretic peptide type C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-69679461-4	chr3	69679410	69679610	+	908.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4B|LINE|L1	-42545.0	NM_133787	97112.0	Mm.21062	NM_133787	ENSMUSG00000027787	Nmd3	C87860	NMD3 ribosome export adaptor	protein-coding	2.42899744176457	1.45344145958752	3.01234558983463	2.76057281611701	3.372392051094	2.75853470630416	2.27652127942475	1.64466873989996	0.274094924717391	0.759186540303058	0.998431161219273
Merged-chr18-11822518-4	chr18	11822416	11822616	+	996.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045421, intron 3 of 3)	intron (NR_045421, intron 3 of 3)	-16758.0	NM_001146287	63955.0	Mm.40717	NM_022021	ENSMUSG00000040957	Cables1	Cables|ik3-1	CDK5 and Abl enzyme substrate 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-108874615-2	chr6	108874472	108874672	+	952.0	f0_balb.idr|f1_balb.idr	Intergenic	MLT1A|LTR|ERVL-MaLR	45931.0	NM_138677	192193.0	Mm.21596	NM_138677	ENSMUSG00000030104	Edem1	A130059K23Rik|EDEM|mKIAA0212	ER degradation enhancer, mannosidase alpha-like 1	protein-coding	2.45749861466052	2.77319156842297	2.39765840220916	1.48424025622702	3.09732515421642	3.39060534943675	3.61068328901943	2.92988576513227	1.71869214695905	0.0185476370194354	0.170481012992226
Merged-chr4-139199858-4	chr4	139199741	139199941	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	5730.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	5.4597111666773	5.27420250060078	5.08142489694943	5.02523763068772	5.51742571420774	5.23348748766371	5.18879993242304	5.11606230258831	0.0616041453539566	0.833407871100409	0.998431161219273
Merged-chr14-63124923-3	chr14	63124831	63125031	+	902.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007798, intron 1 of 9)	intron (NM_007798, intron 1 of 9)	2469.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-24608211-3	chr13	24608118	24608318	+	902.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286100, intron 1 of 22)	intron (NM_001286100, intron 1 of 22)	-3451.0	NR_024599	76024.0	Mm.440710	NR_024599		Gm11346	5830431A10Rik|AI447617|Gm11347	X-linked lymphocyte-regulated 5 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-115682-1	chr1	115582	115782	+	1000.0	f1_c57bl6.idr	Intergenic	Intergenic	3555816.0	NM_001011874	497097.0	Mm.454496	NM_001011874	ENSMUSG00000051951	Xkr4	AY534250|Gm210|XRG4|mKIAA1889	X-linked Kx blood group related 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-89211291-4	chr15	89211202	89211402	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027805)	promoter-TSS (NM_027805)	-257.0	NM_026813	71474.0	Mm.184055	NM_026813	ENSMUSG00000036561	Ppp6r2	1110033O10Rik|8430411H09Rik|B230107H12Rik|Pp6r2|Saps2	protein phosphatase 6, regulatory subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26240630-2	chr17	26240530	26240730	+	659.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001206335, intron 1 of 12)	intron (NM_001206335, intron 1 of 12)	3612.0	NM_207217	106581.0	Mm.28844	NM_207217	ENSMUSG00000024187	Fam234a	Itfg3	family with sequence similarity 234, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97278127-4	chr6	97278020	97278220	+	983.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25340.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	2.25096971495621	1.6072908066452	2.86034572656425	1.71907755267143	1.94251140870033	2.5501087277183	2.4637013319561	1.72730908876678	-0.0173647412990005	0.985082299373549	0.998431161219273
Merged-chr7-89299151-1	chr7	89299051	89299251	+	863.0	f0_balb.idr	intron (NM_028343, intron 3 of 14)	intron (NM_028343, intron 3 of 14)	39636.0	NM_028343	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-107820261-2	chr5	107820161	107820361	+	680.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007964, intron 4 of 17)	intron (NM_007964, intron 4 of 17)	-9901.0	NM_001276397	73318.0	Mm.441500	NM_028502	ENSMUSG00000063447	Ube2d2b	1700013N18Rik	ubiquitin-conjugating enzyme E2D 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-64155971-4	chr7	64155873	64156073	+	893.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039104, intron 1 of 26)	intron (NM_001039104, intron 1 of 26)	2138.0	NM_001039104	17364.0	Mm.38875	NM_018752	ENSMUSG00000030523	Trpm1	4732499L03Rik|AI606771|Ltrpc1|Mlsn1	transient receptor potential cation channel, subfamily M, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129410562-2	chr2	129410454	129410654	+	616.5	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-39415.0	NM_008361	16176.0	Mm.222830	NM_008361	ENSMUSG00000027398	Il1b	IL-1beta|Il-1b	interleukin 1 beta	protein-coding	1.96504715433124	2.08613590306719	1.15661555799974	2.41714351995952	1.33011864993562	1.20027908670717	2.7793603066915	3.1266734148745	0.884087033678244	0.415921150974324	0.896676881011847
Merged-chr11-45980281-2	chr11	45980181	45980381	+	714.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173384)	promoter-TSS (NM_173384)	-29.0	NM_173384	214105.0	Mm.66708	NM_173384	ENSMUSG00000040489	Sox30	-	SRY (sex determining region Y)-box 30	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-6251321-4	chr2	6251222	6251422	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040333, intron 2 of 6)	intron (NR_040333, intron 2 of 6)	-38328.0	NM_024208	67856.0	Mm.38342	NM_024208	ENSMUSG00000039063	Echdc3	2310005D12Rik|AI662097	enoyl Coenzyme A hydratase domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30719082-4	chr2	30718977	30719177	+	865.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2133.0	NR_037272	100526499.0		NR_037272	ENSMUSG00000093091	Mir3089	mir-3089|mmu-mir-3089	microRNA 3089	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-46302881-2	chr2	46302781	46302981	+	764.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	606276.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-4865867-2	chr7	4865764	4865964	+	944.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026158, intron 1 of 5)	intron (NM_026158, intron 1 of 5)	315.0	NM_026158	67441.0	Mm.41385	NM_026158	ENSMUSG00000052605	Isoc2b	0610042E07Rik|AI553388|Isoc2	isochorismatase domain containing 2b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-110685776-4	chr9	110685680	110685880	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028312, intron 1 of 6)	intron (NM_028312, intron 1 of 6)	29277.0	NM_028312	72654.0	Mm.249115	NM_028312	ENSMUSG00000019659	Ccdc12	2700094L05Rik|C76605	coiled-coil domain containing 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55177472-4	chr14	55177373	55177573	+	781.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44534.0	NM_027790	71412.0	Mm.85484	NM_027790	ENSMUSG00000022209	Dhrs2	5430405K24Rik|Hep27	dehydrogenase/reductase member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-7841931-4	chr10	7841798	7841998	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172785, intron 2 of 5)	intron (NM_172785, intron 2 of 5)	5517.0	NR_039563	100628581.0		NR_039563	ENSMUSG00000093060	Mir5104	mir-5104|mmu-mir-5104|mu-mir-5104	microRNA 5104	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-125314137-3	chr5	125314040	125314240	+	764.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205083, intron 1 of 10)	intron (NM_001205083, intron 1 of 10)	26954.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	1.79859027510496	1.21471511591759	2.08380159229585	2.49362233815971	1.13229203093275	2.40770100822213	2.32351004062035	1.90747127843896	0.126008179044488	0.907647011397729	0.998431161219273
Merged-chr6-114968608-2	chr6	114968508	114968708	+	762.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356371, intron 1 of 5)	intron (NM_001356371, intron 1 of 5)	595.0	NM_001356371	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-89478858-2	chr15	89478758	89478958	+	776.833313	f1_balb.idr|f1_c57bl6.idr	intron (NR_077233, intron 4 of 4)	intron (NR_077233, intron 4 of 4)	-1434.0	NM_009713	11883.0	Mm.620	NM_009713	ENSMUSG00000022620	Arsa	AS-A|ASA|AW212749|As-2|As2|TISP73	arylsulfatase A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-55416479-1	chr15	55416379	55416579	+	615.0	f1_balb.idr	intron (NM_181277, intron 19 of 47)	B3A|SINE|B2	108729.0	NM_181277	12818.0	Mm.297859	NM_181277	ENSMUSG00000022371	Col14a1	5730412L22Rik|AW108078	collagen, type XIV, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-108158668-4	chr13	108158566	108158766	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001362403)	promoter-TSS (NM_001362403)	-41.0	NM_001127346	75597.0	Mm.276040	NM_001127346	ENSMUSG00000068184	Ndufaf2	1810058I14Rik|C86051|Ndufa12l|mimitin	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 2	protein-coding	5.65094639360642	5.61254887436182	5.90766182253289	6.14714654293364	5.87245409647061	5.97120719959922	5.70920771299043	5.75264844233822	-0.0206074258563528	0.933077387256	0.998431161219273
Merged-chr6-108659516-4	chr6	108659410	108659610	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104577, intron 1 of 6)	CpG	-1119.0	NM_011498	20893.0	Mm.2436	NM_011498	ENSMUSG00000030103	Bhlhe40	Bhlhb2|C130042M06Rik|CR8|Clast5|Dec1|Sharp2|Stra13|Stra14	basic helix-loop-helix family, member e40	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-14448556-1	chr6	14448456	14448656	+	715.0	f1_balb.idr	Intergenic	Lx8|LINE|L1	306718.0	NM_080464	140491.0	Mm.209429	NM_080464	ENSMUSG00000042717	Ppp1r3a	GM|RG1|RGL	protein phosphatase 1, regulatory (inhibitor) subunit 3A	protein-coding	1.1847271088941	1.45669794984695	0.719669532177726	1.0185563932277	0.97630411593748	1.6335797789735	0.721580269181702	0.714163253270631	-0.134363541766116	0.930002195466618	0.998431161219273
Merged-chr1-177483769-4	chr1	177483663	177483863	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger7|DNA|TcMar-Tigger	37942.0	NM_013915	30928.0	Mm.330700	NM_013915	ENSMUSG00000063659	Zbtb18	RP58|Zfp238|Znf238.|zfp-238	zinc finger and BTB domain containing 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-122736970-4	chr10	122736875	122737075	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110218, intron 1 of 9)	intron (NM_001110218, intron 1 of 9)	57660.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133170290-4	chr4	133170210	133170410	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153423, intron 1 of 8)	intron (NM_153423, intron 1 of 8)	-25345.0	NR_105984	102466215.0		NR_105984	ENSMUSG00000099202	Mir7017	Gm27945|mmu-mir-7017	microRNA 7017	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-137836224-4	chr5	137836113	137836313	+	898.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153510)	promoter-TSS (NM_153510)	65.0	NM_153510	231805.0	Mm.379385	NM_153510	ENSMUSG00000046245	Pilra	AV021745|FDF03	paired immunoglobin-like type 2 receptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-10100894-2	chr13	10100794	10100994	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_033269, intron 3 of 4)	intron (NM_033269, intron 3 of 4)	259909.0	NM_033269	12671.0	Mm.342315	NM_033269	ENSMUSG00000046159	Chrm3	Chrm-3|M3|M3R	cholinergic receptor, muscarinic 3, cardiac	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-11046263-3	chr18	11046165	11046365	+	830.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_105023, intron 4 of 5)	MIR|SINE|MIR	-6245.0	NM_010258	14465.0	Mm.329287	NM_010258	ENSMUSG00000005836	Gata6	AA410133|GATA-6	GATA binding protein 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-107917790-4	chr13	107917679	107917879	+	905.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27715.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-154117606-3	chr1	154117496	154117696	+	963.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-83591.0	NM_001204908	100503355.0	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	Gm10178|Gm203	zinc finger protein 648	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120734992-2	chr8	120734892	120735092	+	879.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1366.0	NM_008320	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-19161040-3	chr8	19160956	19161156	+	855.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3169.0	NM_153115	78128.0	Mm.229357	NM_153115	ENSMUSG00000079842	Spag11a	9230111C08Rik|Bin1b|EP2Q|EP2e|Spag11	sperm associated antigen 11A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72374542-2	chr6	72374442	72374642	+	598.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_016872, intron 1 of 2)	intron (NM_016872, intron 1 of 2)	5926.0	NM_001080742	53620.0	Mm.440321	NM_016872	ENSMUSG00000073002	Vamp5	AF119384|Camp	vesicle-associated membrane protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53023807-2	chr4	53023707	53023907	+	619.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11927.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-131702094-4	chr3	131701982	131702182	+	918.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	136050.0	NM_001289477	23971.0	Mm.244912	NM_011863	ENSMUSG00000028032	Papss1	AI325286|Asapk|SK1	3'-phosphoadenosine 5'-phosphosulfate synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-135694476-2	chr3	135694376	135694576	+	661.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2929.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-60349868-2	chr10	60349768	60349968	+	650.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_028732, intron 1 of 6)	intron (NM_028732, intron 1 of 6)	3017.0	NM_028732	74048.0	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-115853498-4	chr6	115853412	115853612	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031177)	promoter-TSS (NM_031177)	-16.0	NM_001167763	81896.0	Mm.333335	NM_031177	ENSMUSG00000030323	Ift122	C86139|Wdr10|sopb	intraflagellar transport 122	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-103761294-4	chr2	103761186	103761386	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153126)	promoter-TSS (NM_153126)	-16.0	NM_153126	98956.0	Mm.288005	NM_153126	ENSMUSG00000027185	Nat10	AI429152	N-acetyltransferase 10	protein-coding	6.90046867580831	7.20947513809513	7.26775315573724	6.93374180450189	7.23005107672188	7.12604423301384	7.35982039215088	6.73855851553518	0.0509581425042861	0.779288812773071	0.998431161219273
Merged-chr2-104146133-2	chr2	104146033	104146233	+	586.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001033347, exon 21 of 21)	3' UTR (NM_001033347, exon 21 of 21)	23364.0	NM_026634	68243.0	Mm.158191	NM_026634	ENSMUSG00000032671	A930018P22Rik	-	RIKEN cDNA A930018P22 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-83692951-2	chr12	83692851	83693051	+	571.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008943, intron 1 of 11)	intron (NM_008943, intron 1 of 11)	4388.0	NM_008943	19164.0	Mm.998	NM_008943	ENSMUSG00000019969	Psen1	Ad3h|PS-1|PS1|S182	presenilin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-157841953-1	chr2	157841853	157842053	+	543.0	f1_balb.idr	intron (NM_025680, intron 11 of 15)	intron (NM_025680, intron 11 of 15)	-72700.0	NM_198627	277432.0	Mm.441156	NM_198627	ENSMUSG00000037843	Vstm2l	Gm691	V-set and transmembrane domain containing 2-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70541440-2	chr11	70541340	70541540	+	709.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361935, intron 4 of 23)	intron (NM_001361935, intron 4 of 23)	1168.0	NM_001302476	18806.0	Mm.260177	NM_008876	ENSMUSG00000020828	Pld2	PLD1C	phospholipase D2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-124679732-2	chr2	124679632	124679832	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26151.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-34083399-2	chr15	34083299	34083499	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_026002, exon 1 of 12)	exon (NM_026002, exon 1 of 12)	680.0	NM_001357925	67154.0	Mm.130883	NM_026002	ENSMUSG00000022255	Mtdh	2610103J23Rik|3D3|3D3/Lyric|AEG-1|AV353288|D8Bwg1112e|Lyric	metadherin	protein-coding	2.31839987488729	1.9669639573496	2.25314653719871	2.18608773292648	3.23143453546931	3.22171358157336	3.11462492632014	1.36679212005174	1.46782399832074	0.0859452411482586	0.450424142383579
Merged-chr11-101316646-1	chr11	101316546	101316746	+	829.0	f0_c57.idr	intron (NM_011192, intron 1 of 10)	intron (NM_011192, intron 1 of 10)	433.0	NM_011192	19192.0	Mm.288477	NM_011192	ENSMUSG00000078652	Psme3	AA410043|AU020960|Ki|PA28gamma|REGgamma|pa28g	proteaseome (prosome, macropain) activator subunit 3 (PA28 gamma, Ki)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-145201504-2	chr5	145201405	145201605	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_023322, exon 1 of 3)	exon (NM_023322, exon 1 of 3)	377.0	NM_023322	67235.0	Mm.432480	NM_023322	ENSMUSG00000029627	Zkscan14	2310046C23Rik|2810437E14Rik|Zfp99|Znf394	zinc finger with KRAB and SCAN domains 14	protein-coding	2.54031214725573	2.36299804290345	3.00897464919119	2.84894771998475	2.2520977946624	1.52813036003181	2.56257253140002	2.86336150919922	-0.650971106164368	0.425015025785802	0.901293602726532
Merged-chr5-93194033-2	chr5	93193933	93194133	+	958.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_017367, intron 2 of 6)	intron (NM_017367, intron 2 of 6)	12462.0	NM_017367	12453.0	Mm.250419	NM_017367	ENSMUSG00000063015	Ccni	-	cyclin I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-71388457-2	chr2	71388357	71388557	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026115)	promoter-TSS (NM_026115)	-803.0	NM_026115	107435.0	Mm.272472	NM_026115	ENSMUSG00000027018	Hat1	2410071B14Rik|AA536933|Hat-1|KAT1	histone aminotransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-5737978-2	chr13	5737878	5738078	+	924.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	120114.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-57563422-3	chr16	57563347	57563547	+	954.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177871, intron 1 of 1)	intron (NM_001177871, intron 1 of 1)	14205.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135899280-4	chr4	135899170	135899370	+	815.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009924, intron 1 of 1)	intron (NM_009924, intron 1 of 1)	4081.0	NM_009924	12802.0	Mm.297251	NM_009924	ENSMUSG00000062585	Cnr2	CB-2|CB2|CB2-R	cannabinoid receptor 2 (macrophage)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69122767-4	chr11	69122648	69122848	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_033041, exon 4 of 4)	exon (NM_033041, exon 4 of 4)	2295.0	NM_033041	84653.0	Mm.98505	NM_033041	ENSMUSG00000023781	Hes7	bHLHb37	hes family bHLH transcription factor 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-119052643-3	chr10	119052559	119052759	+	940.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR81A|LTR|Gypsy	-2160.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-148071681-2	chr4	148071581	148071781	+	605.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16383.0	NM_009642	11610.0	Mm.46247	NM_009642	ENSMUSG00000029007	Agtrap	3300002E14Rik|AT1R|Atrap|D4Wsu124e	angiotensin II, type I receptor-associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-107044503-3	chr11	107044408	107044608	+	869.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359590, intron 24 of 27)	intron (NM_001359590, intron 24 of 27)	16285.0	NM_001163473	69066.0	Mm.40679	NM_001163473	ENSMUSG00000078607	1810010H24Rik	-	RIKEN cDNA 1810010H24 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-72310299-4	chr12	72310209	72310409	+	720.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153457, intron 1 of 8)	intron (NM_153457, intron 1 of 8)	-73582.0	NM_001007596	104001.0	Mm.221275	NM_153457	ENSMUSG00000021087	Rtn1	Nsp	reticulon 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-35105737-4	chr5	35105637	35105837	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013587)	promoter-TSS (NM_013587)	-40.0	NM_013587	16976.0	Mm.277661	NM_013587	ENSMUSG00000029103	Lrpap1	AA617339|AI790446|AU042172|C77774|HBP44|RAP	low density lipoprotein receptor-related protein associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-116808312-2	chr4	116808212	116808412	+	887.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026654)	promoter-TSS (NM_026654)	578.0	NM_001159581	70603.0	Mm.180333	NM_133250	ENSMUSG00000028687	Mutyh	5730495A01Rik|Mutyha|Mutyhalpha|Mutyhb|Mutyhbeta|Mutyhc|Myh	mutY DNA glycosylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-20655190-3	chr10	20655104	20655304	+	901.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013875, intron 1 of 12)	Lx8|LINE|L1	69874.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-98375557-7	chr12	98375462	98375662	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	106927.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-23255763-4	chr11	23255658	23255858	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134014)	promoter-TSS (NM_134014)	-283.0	NM_001035226	103573.0	Mm.217547	NM_134014	ENSMUSG00000020290	Xpo1	AA420417|Crm1|Exp1	exportin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3823833-4	chr12	3823719	3823919	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271753, intron 1 of 22)	intron (NM_001271753, intron 1 of 22)	16659.0	NM_001271753	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-85502410-4	chr10	85502309	85502509	+	904.474976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028709, intron 1 of 16)	intron (NM_028709, intron 1 of 16)	-96002.0	NM_001017525	74007.0	Mm.36544	NM_028709	ENSMUSG00000020042	Btbd11	6330404E16Rik	BTB (POZ) domain containing 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-97078585-3	chr7	97078437	97078637	+	844.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3214.0	NM_001162477	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-95390756-4	chr4	95390663	95390863	+	845.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-166744.0	NM_001113412	75578.0	Mm.276098	NM_029347	ENSMUSG00000028573	Fggy	2310009E04Rik	FGGY carbohydrate kinase domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-184887236-2	chr1	184887136	184887336	+	786.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4200.0	NM_178692	226777.0	Mm.169542	NM_178692	ENSMUSG00000039349	C130074G19Rik	-	RIKEN cDNA C130074G19 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117450420-2	chr8	117450320	117450520	+	830.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028941, intron 14 of 20)	URR1A|DNA|hAT-Charlie	-2603.0	NR_106045	102466801.0		NR_106045	ENSMUSG00000099062	Mir7077	Gm27774|mmu-mir-7077	microRNA 7077	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-49451582-4	chr2	49451533	49451733	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_172663, exon 1 of 14)	5' UTR (NM_172663, exon 1 of 14)	147.0	NM_172663	227867.0	Mm.29167	NM_172663	ENSMUSG00000069495	Epc2	5830499L14|D2Ertd694e	enhancer of polycomb homolog 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-9763225-4	chr13	9763114	9763314	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347474, intron 1 of 14)	intron (NM_001347474, intron 1 of 14)	596.0	NM_001347471	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45560471-2	chr7	45560371	45560571	+	737.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025330, intron 5 of 8)	ID_B1|SINE|B4	5543.0	NM_025330	66065.0	Mm.285710	NM_025330	ENSMUSG00000030825	Hsd17b14	0610039E24Rik|Dhrs10|retSDR3	hydroxysteroid (17-beta) dehydrogenase 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-152754694-2	chr2	152754594	152754794	+	651.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_053091, intron 1 of 4)	intron (NM_053091, intron 1 of 4)	521.0	NM_053091	84682.0	Mm.196668	NM_053091	ENSMUSG00000009876	Cox4i2	Cox4b|CoxIV-2	cytochrome c oxidase subunit 4I2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-3526505-4	chr2	3526401	3526601	+	879.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_177647)	TTS (NM_177647)	13436.0	NM_177647	227526.0	Mm.211455	NM_177647	ENSMUSG00000039496	Cdnf	9330140G23|Armetl1	cerebral dopamine neurotrophic factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70714228-2	chr8	70714071	70714271	+	763.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4372.0	NM_001195253	100502950.0	Mm.52981	NM_001195253	ENSMUSG00000095026	Gm3336	100041434|2410018E23Rik	predicted gene 3336	protein-coding	0.889873376944336	0.0272789839929459	0.021145074990104	0.0163961127850729	0.295865315870727	0.0286584570053997	0.0224999844372585	0.579913614425946	-0.381033730586023	0.862692047198738	1
Merged-chr15-101131522-1	chr15	101131422	101131622	+	920.0	f1_balb.idr	intron (NM_001277259, intron 3 of 11)	intron (NM_001277259, intron 3 of 11)	3000.0	NM_001277257	11482.0	Mm.279542	NM_009612	ENSMUSG00000000530	Acvrl1	AI115505|AI427544|Acvrlk1|Alk1	activin A receptor, type II-like 1	protein-coding	-0.794002032934915	-0.784306946641704	-0.787488001606573	-0.362323964975447	-0.793398165916683	-0.279083118794118	-0.78678678082321	-0.789511156486875	0.324833107572995	0.913965784115277	1
Merged-chr11-103251418-2	chr11	103251318	103251518	+	830.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016896, intron 1 of 15)	GA-rich|Low_complexity|Low_complexity	15983.0	NM_016896	53859.0	Mm.158981	NM_016896	ENSMUSG00000020941	Map3k14	Nik|aly	mitogen-activated protein kinase kinase kinase 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-5653741-2	chr2	5653641	5653841	+	610.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290374, intron 1 of 9)	intron (NM_001290374, intron 1 of 9)	22305.0	NM_001290376	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-53005425-1	chr2	53005325	53005525	+	574.0	f0_balb.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	147557.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-66438059-4	chr8	66437956	66438156	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175188, intron 6 of 7)	intron (NM_175188, intron 6 of 7)	48474.0	NM_025465	66282.0	Mm.294985	NM_025465	ENSMUSG00000025591	Tma16	1810029B16Rik	translation machinery associated 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-125247513-6	chr2	125247406	125247606	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023595)	promoter-TSS (NM_023595)	-9.0	NM_023595	110074.0	Mm.282499	NM_023595	ENSMUSG00000027203	Dut	5031412I06Rik|5133400F09Rik|D2Bwg0749e|Dutp|dUTPase	deoxyuridine triphosphatase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-68451228-3	chr2	68451121	68451321	+	813.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016866, intron 1 of 17)	intron (NM_016866, intron 1 of 17)	20760.0	NM_016866	53416.0	Mm.198414	NM_016866	ENSMUSG00000027030	Stk39	AW227544|AW556857|DCHT|RF005|Rnl5|SPAK	serine/threonine kinase 39	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-45581470-4	chr19	45581348	45581548	+	945.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013907, intron 6 of 8)	intron (NM_013907, intron 6 of 8)	20863.0	NM_172639	226162.0	Mm.21978	NM_172639	ENSMUSG00000041035	Dpcd	Ndac	deleted in primary ciliary dyskinesia	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-35869322-4	chr16	35869240	35869440	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039530, intron 1 of 16)	intron (NM_001039530, intron 1 of 16)	2042.0	NM_001039530	547253.0	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-64786105-4	chr9	64786048	64786248	+	896.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24863.0	NM_001162917	102442.0	Mm.222473	NM_176935	ENSMUSG00000053641	Dennd4a	AI115600|AI851943|F730015K02Rik	DENN/MADD domain containing 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191278929-2	chr1	191278829	191279029	+	754.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	39189.0	NM_025424	66208.0	Mm.46444	NM_025424	ENSMUSG00000037499	Nenf	1110060M21Rik|SCIRP10|Spuf	neuron derived neurotrophic factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-42840802-2	chr17	42840709	42840909	+	564.5	f0_balb.idr|f1_balb.idr	intron (NM_009847, intron 3 of 17)	intron (NM_009847, intron 3 of 17)	35615.0	NM_009847	12488.0	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding	0.566836642400018	1.0607818864321	0.59862454161278	0.586886196793279	1.90635117333426	1.38796993679924	1.44958406709341	0.588954456795127	3.35664342166306	0.0441746788358127	0.301941395749381
Merged-chr13-73799015-2	chr13	73798915	73799115	+	760.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_011390, exon 14 of 24)	exon (NM_011390, exon 14 of 24)	35318.0	NM_011390	20499.0	Mm.275800	NM_011390	ENSMUSG00000017756	Slc12a7	AA408796|D13Ertd261e|Kcc4	solute carrier family 12, member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-126652563-3	chr3	126652464	126652664	+	643.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025438, intron 2 of 18)	intron (NM_001025438, intron 2 of 18)	55613.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	-0.654834489190363	-0.643942993732768	-0.647513327525516	-0.650266594487338	-0.505578512396072	-0.442563610087124	0.0421006192309084	-0.649785692927014	3.35672825865589	0.199727320687928	1
Merged-chr10-118709870-4	chr10	118709746	118709946	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-153321.0	NR_104123	103214.0	Mm.30529	NR_104123	ENSMUSG00000112230	Ifngas1	AI447422|Tmevpg1	Ifng antisense RNA 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3855993-2	chr19	3855893	3856093	+	792.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271496, intron 1 of 11)	intron (NM_001271496, intron 1 of 11)	4220.0	NR_073190	12660.0	Mm.225505	NM_013490	ENSMUSG00000024843	Chka	CK|CK/EK-alpha|Chetk-alpha|Chk|ChoK|EK|EtnK-alpha	choline kinase alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64228309-2	chr5	64228209	64228409	+	797.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019636, intron 2 of 19)	MER21B|LTR|ERVL	-2048.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-84165853-2	chr6	84165753	84165953	+	732.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077694, intron 40 of 54)	intron (NM_001077694, intron 40 of 54)	146467.0	NM_021469	26903.0	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25802269-2	chr7	25802169	25802369	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_028775)	TTS (NM_028775)	-13536.0	NM_001190975	26362.0	Mm.4128	NM_009465	ENSMUSG00000002602	Axl	AI323647|Ark|Tyro7|Ufo	AXL receptor tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-78278103-3	chr11	78278013	78278213	+	857.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001002004, intron 24 of 38)	intron (NM_001002004, intron 24 of 38)	-12728.0	NM_001287206	216976.0	Mm.477146	NM_001045522		BC030499	BC037104|Sgk494	cDNA sequence BC030499	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-76356129-4	chr16	76356012	76356212	+	988.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173440, intron 1 of 3)	intron (NM_173440, intron 1 of 3)	16937.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-50188189-4	chr6	50188101	50188301	+	995.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361248, intron 11 of 13)	intron (NM_001361248, intron 11 of 13)	73568.0	NM_018769	54722.0	Mm.248361	NM_018769	ENSMUSG00000029821	Gsdme	2310037D07Rik|4932441K13Rik|Dfna5|Dfna5h|EG14210|Fin15	gasdermin E	protein-coding	3.1790526863104	3.25919282451766	3.79046045070524	3.94315323490512	2.90152139255295	3.94729740028712	4.68008419321526	4.1263899391262	0.665008001554894	0.225267947812064	0.717167390195244
Merged-chr19-32788762-4	chr19	32788648	32788848	+	697.958313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008960, intron 2 of 8)	intron (NM_008960, intron 2 of 8)	31171.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	1.2861518923377	1.15669388885276	2.44477314884738	2.76480468951083	1.49608816944999	1.16405378482302	2.24955371288388	2.90547192217574	0.074642085297733	0.947304520542603	0.998431161219273
Merged-chr10-59302887-2	chr10	59302787	59302987	+	933.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MMERVK10C-int|LTR|ERVK	-20409.0	NM_001316371	18451.0	Mm.2212	NM_011030	ENSMUSG00000019916	P4ha1	AL022634|P4ha	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-100503578-2	chr12	100503478	100503678	+	768.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033213, intron 1 of 19)	intron (NM_001033213, intron 1 of 19)	17244.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-64599284-1	chr1	64599184	64599384	+	599.0	f0_balb.idr	3' UTR (NM_009952, exon 9 of 9)	3' UTR (NM_009952, exon 9 of 9)	17884.0	NM_025964	67099.0	Mm.46394	NM_025964	ENSMUSG00000025956	Mettl21a	2310038H17Rik|AI464204|Fam119a	methyltransferase like 21A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-53783436-4	chr11	53783330	53783530	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12957.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80115382-4	chr7	80115272	80115472	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173011)	promoter-TSS (NM_173011)	-22.0	NM_173011	269951.0	Mm.246432	NM_173011	ENSMUSG00000030541	Idh2	E430004F23|IDPm|Idh-2	isocitrate dehydrogenase 2 (NADP+), mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-54115477-2	chr10	54115377	54115577	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	39555.0	NR_038016	100502920.0	Mm.403982	NR_038016	ENSMUSG00000097069	Gm16998	-	predicted gene, 16998	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101174425-2	chr15	101174325	101174525	+	697.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007395, intron 1 of 8)	CpG	353.0	NM_007395	11479.0	Mm.308467	NM_007395	ENSMUSG00000000532	Acvr1b	6820432J04|ALK-4|ActR-IB|ActRIB|Acvrlk4|Alk4|SKR2	activin A receptor, type 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-106759334-2	chr3	106759234	106759434	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007651, exon 8 of 8)	3' UTR (NM_007651, exon 8 of 8)	30815.0	NM_007651	12508.0	Mm.316861	NM_007651	ENSMUSG00000040747	Cd53	AI323659|Ox-44|Tspan25	CD53 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-119807610-2	chr4	119807510	119807710	+	600.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7068.0	NM_010657	16656.0	Mm.302758	NM_010657	ENSMUSG00000028634	Hivep3	2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3	human immunodeficiency virus type I enhancer binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-84546299-1	chr16	84546199	84546399	+	582.0	f1_balb.idr	Intergenic	RMER1C|Other|Other	-133490.0	NR_040537	78023.0	Mm.243853	NR_040537		4930529L06Rik	-	RIKEN cDNA 4930529L06 gene	ncRNA	-1.27019771385087	-1.24210814412887	-1.25266437872947	-1.26133558413341	-1.26974192642364	-1.07372280185361	-1.25027467860197	-0.824525533001554	2.50806194279963	0.447256732080241	1
Merged-chr12-40536206-7	chr12	40536042	40536242	+	866.357117	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	MLTR11A|LTR|ERVK	90089.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-73228046-2	chr6	73227946	73228146	+	596.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6415.0	NM_001164669	330355.0	Mm.333166	NM_001164669	ENSMUSG00000052861	Dnah6	9830168K20|A730004I20Rik|Dnahc6|mKIAA1697|mdhc6	dynein, axonemal, heavy chain 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-78580232-4	chr2	78580122	78580322	+	969.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-288825.0	NM_009454	22193.0	Mm.1485	NM_009454	ENSMUSG00000027011	Ube2e3	Ubce4|ubcM2	ubiquitin-conjugating enzyme E2E 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-79841143-2	chr17	79841043	79841243	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	54980.0	NM_178050	56298.0	Mm.175403	NM_019717	ENSMUSG00000059811	Atl2	2010110I21Rik|AA407293|AV334690|Aip-2|Arl6ip2	atlastin GTPase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-115816075-4	chr3	115815967	115816167	+	977.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	71992.0	NR_027894	68161.0	Mm.392043	NR_015487	ENSMUSG00000054426	A930005H10Rik	-	RIKEN cDNA A930005H10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-108702794-4	chr6	108702706	108702906	+	999.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41872.0	NR_104577	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	4.05201923368617	4.51531911625824	3.86247692085448	4.69847804579659	4.27592504118111	3.85587955616416	4.69047184031427	4.3314405750288	0.000989726892629766	0.998129546475831	0.999477195380955
Merged-chr12-117831751-4	chr12	117831681	117831881	+	884.2374880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12080.0	NM_146040	217946.0	Mm.281149	NM_146040	ENSMUSG00000021175	Cdca7l	BC006933|JPO2	cell division cycle associated 7 like	protein-coding	-1.53722258964646	-1.35557023456888	-1.51521609278655	-1.52305243984666	-1.24945022075946	-1.50360887271967	-1.51305647152326	-1.52164973746956	0.640848314145952	0.855386040730507	1
Merged-chr7-19267223-4	chr7	19267121	19267321	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009499, intron 1 of 12)	intron (NM_009499, intron 1 of 12)	4633.0	NM_001282021	22323.0	Mm.9684	NM_009499	ENSMUSG00000030403	Vasp	-	vasodilator-stimulated phosphoprotein	protein-coding	4.11906828329417	4.23444282869895	4.09640714181917	4.51600627894519	4.64208449760294	4.45298083621089	4.05909217536191	4.77558911977408	0.338774198572154	0.391732947289109	0.880996748971749
Merged-chr15-99342820-4	chr15	99342722	99342922	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310622, intron 1 of 25)	intron (NM_001310622, intron 1 of 25)	27660.0	NM_001310623	22379.0	Mm.29043	NM_011711	ENSMUSG00000023008	Fmnl3	2700073B04Rik|FBP11|Wbp3|mKIAA2014	formin-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-4591142-3	chr2	4591058	4591258	+	720.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177844, intron 5 of 11)	intron (NM_001177844, intron 5 of 11)	31404.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-90435906-2	chr3	90435806	90436006	+	576.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-2270.0	NM_178876	229543.0	Mm.268564	NM_145540	ENSMUSG00000027933	Ints3	C77668	integrator complex subunit 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-12021411-3	chr4	12021313	12021513	+	954.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54839.0	NR_040577	100503636.0	Mm.209078	NR_040577		1700123M08Rik	1600025K15Rik	RIKEN cDNA 1700123M08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-84606306-3	chr16	84606202	84606402	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73487.0	NR_040537	78023.0	Mm.243853	NR_040537		4930529L06Rik	-	RIKEN cDNA 4930529L06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-155447480-2	chr1	155447380	155447580	+	822.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30036.0	NM_011273	19775.0	Mm.266215	NM_011273	ENSMUSG00000026469	Xpr1	Rmc-1|Rmc1|Sxv|Syg1|XR	xenotropic and polytropic retrovirus receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-23259841-4	chr1	23259735	23259935	+	952.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12434.0	NR_029533	387225.0		NR_029533	ENSMUSG00000065405	Mir30a	Mirn30a|mir-30a|mmu-mir-30a	microRNA 30a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166594234-2	chr2	166594134	166594334	+	554.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 15 of 39)	B4A|SINE|B4	29712.0	NR_152154	433503.0	Mm.491336	NR_152154		Gm29679	-	predicted gene, 29679	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70330905-2	chr8	70330821	70331021	+	844.333374	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001122829)	TTS (NM_001122829)	1156.0	NM_008107	14559.0	Mm.258280	NM_008107	ENSMUSG00000087408	Gdf1	AI385651|Gdf-1	growth differentiation factor 1	protein-coding	0.912148430609953	0.245416924020416	0.237707510269231	0.231719463977121	0.223194495512138	0.247146976102556	0.968185446589267	0.916241322822084	1.06164966735102	0.604159491469005	1
Merged-chr9-99075185-2	chr9	99075085	99075285	+	590.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029094, intron 8 of 23)	(CAAA)n|Simple_repeat|Simple_repeat	-39495.0	NM_001080776	382097.0	Mm.293727	NM_001080776	ENSMUSG00000044860	Gm1123	AV052824|CLSP	predicted gene 1123	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-21856609-3	chr1	21856472	21856672	+	889.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023872, intron 1 of 13)	intron (NM_023872, intron 1 of 13)	105370.0	NM_001160139	226922.0	Mm.336519	NM_023872	ENSMUSG00000028033	Kcnq5	7730402H11|9230107O05Rik|AA589396|D1Mgi1	potassium voltage-gated channel, subfamily Q, member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-4501879-4	chr2	4501814	4502014	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 5 of 23)	HAL1|LINE|L1	-57840.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-35056965-4	chr16	35056799	35056999	+	844.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023587, intron 3 of 6)	intron (NM_023587, intron 3 of 6)	34478.0	NM_023587	70757.0	Mm.27286	NM_023587	ENSMUSG00000035376	Hacd2	6330408J20Rik|AI255777|AI481689|Hcad2|Ptplb	3-hydroxyacyl-CoA dehydratase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-55624238-2	chr4	55624138	55624338	+	688.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4_|SINE|ID	-91763.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-41304280-1	chr10	41304180	41304380	+	608.0	f0_balb.idr	Intergenic	Intergenic	-1039.0	NM_133999	103199.0	Mm.277242	NM_133999	ENSMUSG00000038417	Fig4	A530089I17Rik|AI326867|Sac3	FIG4 phosphoinositide 5-phosphatase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-67230953-2	chr7	67230853	67231053	+	818.333374	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001291191)	TTS (NM_001291191)	8337.0	NM_001191051	75099.0	Mm.121691	NM_175215	ENSMUSG00000043831	Lysmd4	4930506D23Rik	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-46724146-2	chr14	46724045	46724245	+	596.450012	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36396.0	NM_001360041	72391.0	Mm.272394	NM_028222	ENSMUSG00000037628	Cdkn3	2410006H10Rik|KAP	cyclin-dependent kinase inhibitor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-173420520-4	chr1	173420430	173420630	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001013779)	promoter-TSS (NM_001013779)	-74.0	NM_001013779	383619.0	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32857815-4	chr2	32857728	32857928	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10591.0	NM_001113569	20910.0	Mm.278865	NM_009295	ENSMUSG00000026797	Stxbp1	AI317162|AI326233|MMS10-G|Ms10g|Munc-18a|Munc18-1|N-sec1|Rb-sec1|Sxtbp1|Unc18-1|Unc18h|nsec1	syntaxin binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-57808752-4	chr14	57808658	57808858	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198605, intron 7 of 8)	intron (NM_198605, intron 7 of 8)	10334.0	NR_037238	100526476.0		NR_037238	ENSMUSG00000092784	Mir3077	mir-3077|mmu-mir-3077	microRNA 3077	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97990099-2	chr11	97989999	97990199	+	636.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_152188, exon 6 of 6)	non-coding (NR_152188, exon 6 of 6)	-3653.0	NM_001163608	72324.0	Mm.39617	NM_028199	ENSMUSG00000017417	Plxdc1	2410003I07Rik|AI848450|Tem7	plexin domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117176568-3	chr11	117176460	117176660	+	875.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23101.0	NM_001113486	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-4710235-4	chr11	4710062	4710262	+	861.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026015, intron 1 of 5)	intron (NM_026015, intron 1 of 5)	5506.0	NM_001356390	67178.0	Mm.271056	NM_026015	ENSMUSG00000009076	Zmat5	2610510L01Rik|D11Bwg0572e|D11Bwg1548e	zinc finger, matrin type 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-73656875-2	chr12	73656775	73656975	+	688.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008856, intron 2 of 13)	intron (NM_008856, intron 2 of 13)	72079.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-108252663-1	chr11	108252563	108252763	+	580.0	f1_balb.idr	intron (NM_011101, intron 2 of 16)	MER21C|LTR|ERVL	91225.0	NM_011101	18750.0	Mm.222178	NM_011101	ENSMUSG00000050965	Prkca	AI875142|Pkca	protein kinase C, alpha	protein-coding	-0.618802996698496	-0.607328694272964	-0.611086729728348	-0.613986951272676	-0.618086468559668	0.0317600808888597	-0.610257766076773	-0.17212621731017	3.41989740960314	0.218146092618797	1
Merged-chr13-49215590-1	chr13	49215490	49215690	+	1000.0	f0_c57.idr	intron (NM_026738, intron 1 of 5)	CpG	436.0	NM_026738	68480.0	Mm.3336	NM_026738	ENSMUSG00000037960	Card19	1110007C09Rik|AI851695|Bincard	caspase recruitment domain family, member 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-38020736-1	chr11	38020636	38020836	+	663.0	f1_balb.idr	Intergenic	Lx2B2|LINE|L1	361747.0	NR_131154	100039148.0	Mm.120467	NR_131154	ENSMUSG00000087388	Gm12128	-	predicted gene 12128	ncRNA	-0.259070635579071	-0.241399553934728	0.483646627512767	-0.251607667499577	-0.257955911830491	0.555648408464057	-0.245875104635532	-0.250826425808721	0.200977024927677	0.93635043517253	1
Merged-chr11-102208997-2	chr11	102208897	102209097	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077696, intron 3 of 26)	intron (NM_001077696, intron 3 of 26)	19298.0	NM_175935	68401.0	Mm.22385	NM_175935	ENSMUSG00000034793	G6pc3	0710001K01Rik|AU019276|AU045429|AV128920|AW545836|UGRP	glucose 6 phosphatase, catalytic, 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-175619990-4	chr1	175619873	175620073	+	794.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010209, intron 1 of 9)	RMER19B|LTR|ERVK	5662.0	NM_010209	14194.0	Mm.41502	NM_010209	ENSMUSG00000026526	Fh1	Fh|Fh-1	fumarate hydratase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-67223925-2	chr7	67223825	67224025	+	871.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001191051, intron 2 of 2)	intron (NM_001191051, intron 2 of 2)	1309.0	NM_001191051	75099.0	Mm.121691	NM_175215	ENSMUSG00000043831	Lysmd4	4930506D23Rik	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-43282417-2	chr15	43282317	43282517	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008388, intron 1 of 12)	CpG	319.0	NM_008388	16341.0	Mm.289992	NM_008388	ENSMUSG00000022336	Eif3e	48kDa|Eif3s6|Int6|eIF3-p46|eIF3-p48	eukaryotic translation initiation factor 3, subunit E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24173998-2	chr17	24173898	24174098	+	625.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-4320.0	NM_001361531	11984.0	Mm.30155	NM_009729	ENSMUSG00000024121	Atp6v0c	Atp6c|Atp6c2|Atp6l|Atpl|Atpl-rs1|PL16|VATL|Vma3	ATPase, H+ transporting, lysosomal V0 subunit C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-30071896-2	chr16	30071796	30071996	+	747.625	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	6539.0	NM_008235	15205.0	Mm.390859	NM_008235	ENSMUSG00000022528	Hes1	Hry|bHLHb39	hes family bHLH transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101328895-2	chr15	101328795	101328995	+	549.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35683.0	NR_033803	77717.0	Mm.391998	NR_033803	ENSMUSG00000075408	6030408B16Rik	AI225877	RIKEN cDNA 6030408B16 gene	ncRNA	0.656086040449433	1.57127437777647	0.687874136431921	1.55401492080482	0.659109734838323	1.58602879380081	0.691193808048877	1.56416680796211	0.0339300588441522	0.982929768233732	0.998431161219273
Merged-chr9-110682557-4	chr9	110682454	110682654	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028312, intron 1 of 6)	MIR|SINE|MIR	26051.0	NM_028312	72654.0	Mm.249115	NM_028312	ENSMUSG00000019659	Ccdc12	2700094L05Rik|C76605	coiled-coil domain containing 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-98799871-3	chr7	98799769	98799969	+	819.600037	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-35243.0	NM_001285794	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-81702754-2	chr17	81702654	81702854	+	622.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 1 of 8)	PB1D10|SINE|Alu	35633.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-8947862-4	chr12	8947789	8947989	+	893.258301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010770)	promoter-TSS (NM_010770)	-40.0	NM_010770	17182.0	Mm.42226	NM_010770	ENSMUSG00000020583	Matn3	AV009181	matrilin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-100456491-4	chr9	100456382	100456582	+	902.80835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	29991.0	NM_001033543	213208.0	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	3.04713993951275	2.51654216725036	3.21354774199765	3.52398781483267	3.94654172896644	2.86874410145908	3.02609234116353	3.99232192491356	0.69933126894182	0.257199036337499	0.756341675974833
Merged-chr3-149394014-4	chr3	149393925	149394125	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	119288.0	NR_040591	381482.0	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-93567565-2	chr15	93567465	93567665	+	679.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033217, intron 1 of 7)	intron (NM_001033217, intron 1 of 7)	28326.0	NM_001033217	106042.0	Mm.150314	NM_001033217	ENSMUSG00000036158	Prickle1	1110058P22Rik|AW215793|Prickle|b2b019Clo|mpk1	prickle planar cell polarity protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100349279-2	chr11	100349179	100349379	+	847.666626	f1_balb.idr|f1_c57bl6.idr	exon (NM_177981, exon 11 of 13)	exon (NM_177981, exon 11 of 13)	6849.0	NM_001359052	15114.0	Mm.281700	NM_010404	ENSMUSG00000006930	Hap1	HAP-1	huntingtin-associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25134005-2	chr7	25133905	25134105	+	598.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1545.0	NM_001163554	18987.0	Mm.76683	NM_011138	ENSMUSG00000008496	Pou2f2	Oct-2|Oct2a|Oct2b|Oct2c|Oct2d|Otf-2|Otf2	POU domain, class 2, transcription factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-46280737-4	chr18	46280637	46280837	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172627, exon 1 of 9)	exon (NM_172627, exon 1 of 9)	113.0	NM_172627	225467.0	Mm.262096	NM_172627	ENSMUSG00000024477	Pggt1b	2010207C17Rik|2610100E13|AI451237|AI551093|BGG1|GGT1	protein geranylgeranyltransferase type I, beta subunit	protein-coding	4.44108857248347	4.9250696541952	5.25161501199261	2.28216657783533	4.03139977132724	4.38530898277174	4.35831483692959	2.8415367943436	-0.719330016588639	0.227137543559818	0.71997232966636
Merged-chr11-115117006-2	chr11	115116906	115117106	+	579.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_145634, exon 7 of 7)	exon (NM_145634, exon 7 of 7)	16986.0	NM_001347648	246746.0	Mm.277387	NM_145634	ENSMUSG00000047798	Cd300lf	CLIM1|CLM-1|CLM1|Digr2|F730004D16Rik|IREM1|IgSF13|LMIR3|Pigr3	CD300 molecule like family member F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-71953853-1	chr9	71953753	71953953	+	684.0	f1_c57bl6.idr	intron (NM_011544, intron 5 of 20)	B1F2|SINE|Alu	-57757.0	NM_001253863	21406.0	Mm.171615	NM_011544	ENSMUSG00000032228	Tcf12	A130037E08Rik|ALF1|HEB|HEBAlt|HTF-4|HTF4|ME1|REB|bHLHb20	transcription factor 12	protein-coding	-1.22315906685268	-1.19557143632602	-1.20673282037136	-0.55836125556573	-1.22265483704505	-1.19315271784257	-1.20420612767407	-1.21425999345206	-2.67891099987134	0.437057736398543	1
Merged-chr15-38473499-2	chr15	38473392	38473592	+	1000.0	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	17055.0	NR_105916	102465574.0		NR_105916	ENSMUSG00000099110	Mir6951	Gm27765|mmu-mir-6951	microRNA 6951	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-17742052-2	chr14	17741952	17742152	+	897.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113417, intron 1 of 9)	B4A|SINE|B4	81092.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-87571101-2	chr17	87571039	87571239	+	920.93335	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64840.0	NM_008532	17075.0	Mm.4259	NM_008532	ENSMUSG00000045394	Epcam	CD326|EGP|EGP-2|Egp314|Ep-CAM|EpCAM1|GA733-2|Ly74|TROP1|Tacsd1|Tacstd1|gp40	epithelial cell adhesion molecule	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69356115-1	chr11	69356015	69356215	+	773.0	f1_balb.idr	intron (NM_146019, intron 18 of 39)	intron (NM_146019, intron 18 of 39)	13311.0	NM_146019	216848.0	Mm.178246	NM_146019	ENSMUSG00000018474	Chd3	2600010P09Rik|AF020312|Chd7|Prp7|Prp9-1	chromodomain helicase DNA binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28380297-4	chr7	28380206	28380406	+	930.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1078.0	NM_011756	22695.0	Mm.389856	NM_011756	ENSMUSG00000044786	Zfp36	Gos24|Nup475|TIS11D|TISII|Tis11|Ttp|Zfp-36	zinc finger protein 36	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-11716324-4	chr15	11716192	11716392	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	189382.0	NM_008728	18162.0	Mm.25259	NM_008728	ENSMUSG00000022206	Npr3	ANP-C|ANPR-C|EF-2|NPR-C|lgj|stri	natriuretic peptide receptor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70619030-4	chr8	70618921	70619121	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153074, intron 2 of 2)	intron (NM_153074, intron 2 of 2)	2177.0	NM_153074	211228.0	Mm.132939	NM_153074	ENSMUSG00000049988	Lrrc25	Mapa	leucine rich repeat containing 25	protein-coding	7.04055573576156	6.66156184143554	7.19432894285772	7.05109807461131	7.088925228107	7.35861194288362	7.36824607915046	6.97949604084234	0.211706291661587	0.230922797597256	0.725291027636617
Merged-chr15-78582042-4	chr15	78581933	78582133	+	921.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_155437)	promoter-TSS (NR_155437)	-444.0	NR_155437	102640742.0	Mm.253544	NR_155437	ENSMUSG00000116097	Gm36738	-	predicted gene, 36738	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-47362896-1	chr14	47362796	47362996	+	583.0	f1_c57bl6.idr	Intergenic	Intergenic	-10964.0	NM_010705	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	-1.84354474832578	-1.81325489144778	-1.53416061964661	-1.82993901100912	-1.8414184563789	-1.81126990231468	-1.82034119297928	-1.82859217979378	-1.52252619601533	0.665276690233728	1
Merged-chr15-64242148-3	chr15	64242045	64242245	+	907.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 3 of 28)	intron (NM_001276461, intron 3 of 28)	70528.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-119631084-2	chr13	119630984	119631184	+	898.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_020279, intron 1 of 2)	Lx7|LINE|L1	7265.0	NM_020279	56838.0	Mm.143745	NM_020279	ENSMUSG00000074715	Ccl28	CCK1|MEC|Scya28	chemokine (C-C motif) ligand 28	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-30013065-8	chr5	30012969	30013169	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031168)	promoter-TSS (NM_031168)	-45.0	NM_001314054	16193.0	Mm.1019	NM_031168	ENSMUSG00000025746	Il6	Il-6	interleukin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-84996286-4	chr12	84996201	84996401	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178363)	promoter-TSS (NM_178363)	-20.0	NM_001347421	56531.0	Mm.153183	NM_178363	ENSMUSG00000021244	Ylpm1	A930013E17Rik|ZAP|Zap3	YLP motif containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3419902-4	chr4	3419814	3420014	+	805.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-117176.0	NR_037306	100499523.0		NR_037306	ENSMUSG00000094253	Mir3471-2	mmu-mir-3471-2	microRNA 3471-2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-23659624-2	chr17	23659524	23659724	+	577.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153784)	promoter-TSS (NM_153784)	-882.0	NM_153784	212733.0	Mm.59997	NM_153784	ENSMUSG00000043782	Bicdl2	BICDR-2|Ccdc64b	BICD family like cargo adaptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-26311719-1	chr12	26311619	26311819	+	634.666687	f0_balb.idr	intron (NM_080563, intron 8 of 8)	intron (NM_080563, intron 8 of 8)	-34991.0	NR_130981	75243.0	Mm.444753	NR_130981	ENSMUSG00000114048	4930549C15Rik	-	RIKEN cDNA 4930549C15 gene	ncRNA	2.25378030102255	2.30593607524292	1.46294302928332	3.62018214790941	2.27509413116996	2.69760775415242	1.18071276482629	1.1431744579421	-1.32013658377576	0.208183690693951	0.696927433299671
Merged-chr5-111036362-3	chr5	111036252	111036452	+	706.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001267622, intron 2 of 22)	intron (NM_001267622, intron 2 of 22)	32208.0	NR_030482	735278.0		NR_030482	ENSMUSG00000076163	Mir701	Mirn701|mir-701|mmu-mir-701	microRNA 701	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-120666766-3	chr2	120666664	120666864	+	879.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57169.0	NM_001290807	66296.0	Mm.221900	NM_025475	ENSMUSG00000027285	Haus2	1700101G24Rik|2410007P03Rik|AU020217|Cep27	HAUS augmin-like complex, subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-98514659-2	chr15	98514559	98514759	+	695.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5175.0	NR_034051	100217417.0	Mm.486440	NR_034051	ENSMUSG00000065336	Snora34	MBI-89	small nucleolar RNA, H/ACA box 34	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106781931-2	chr11	106781831	106782031	+	633.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_037224)	TTS (NR_037224)	828.0	NR_037224	100526469.0		NR_037224	ENSMUSG00000093273	Mir3064	mir-3064|mmu-mir-3064	microRNA 3064	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-119596955-4	chr13	119596831	119597031	+	913.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177666, intron 2 of 3)	intron (NM_001177666, intron 2 of 3)	-26888.0	NM_020279	56838.0	Mm.143745	NM_020279	ENSMUSG00000074715	Ccl28	CCK1|MEC|Scya28	chemokine (C-C motif) ligand 28	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-36927261-2	chr19	36927161	36927361	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080706, intron 1 of 37)	intron (NM_001080706, intron 1 of 37)	1182.0	NM_001080706	107182.0	Mm.295062	NM_001080706	ENSMUSG00000040565	Btaf1	AI414500|AI447930|E430027O22Rik|TAF170	B-TFIID TATA-box binding protein associated factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-95852497-4	chr8	95852386	95852586	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172758, intron 2 of 11)	intron (NM_172758, intron 2 of 11)	1005.0	NM_172758	234595.0	Mm.29267	NM_172758	ENSMUSG00000036534	Slc38a7	D430050E18	solute carrier family 38, member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-106376437-3	chr1	106376326	106376526	+	961.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133821, intron 13 of 16)	intron (NM_133821, intron 13 of 16)	170205.0	NR_106164	102466254.0		NR_106164	ENSMUSG00000098344	Mir3473f	Gm27846|mmu-mir-3473f	microRNA 3473f	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-142735452-2	chr2	142735352	142735552	+	835.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355123, intron 17 of 26)	intron (NM_001355123, intron 17 of 26)	166012.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70504067-2	chr8	70503967	70504167	+	724.333374	f1_balb.idr|f1_c57bl6.idr	TTS (NM_025577)	TTS (NM_025577)	2359.0	NR_151646	66462.0	Mm.28242	NM_025577	ENSMUSG00000058833	Rex1bd	2810428I15Rik	required for excision 1-B domain containing	protein-coding	0.305583817033981	-0.231311951422462	-0.235758722400858	-0.0774791690285791	-0.244019882721288	-0.230308636786828	-0.234778540524071	0.387622502280249	-0.0383376490428252	0.987403799555162	1
Merged-chr11-69999469-2	chr11	69999369	69999569	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001291127, exon 4 of 4)	3' UTR (NM_001291127, exon 4 of 4)	-1157.0	NM_007888	13543.0	Mm.5114	NM_007888	ENSMUSG00000020888	Dvl2	-	dishevelled segment polarity protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-32309008-2	chr19	32308908	32309108	+	710.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 2 of 9)	RLTR11A|LTR|ERVK	40308.0	NM_001168525	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-21319063-4	chr16	21318973	21319173	+	991.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14283.0	NR_131983	76222.0	Mm.86031	NR_131983		Magef1	6430590I03Rik	melanoma antigen family F, 1	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-98362257-4	chr7	98362125	98362325	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001168539)	promoter-TSS (NM_001168539)	-897.0	NM_001168539	244152.0	Mm.25317	NM_001024619	ENSMUSG00000049580	Tsku	9530051K01Rik|E2ig4|Lrrc54|Tsk	tsukushi, small leucine rich proteoglycan	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-86548118-4	chr6	86548000	86548200	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_037961, intron 3 of 4)	intron (NR_037961, intron 3 of 4)	20699.0	NR_037961	72012.0	Mm.349174	NR_037960	ENSMUSG00000097048	1600020E01Rik	-	RIKEN cDNA 1600020E01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-103202092-4	chr9	103201986	103202186	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009275)	promoter-TSS (NM_009275)	-21.0	NM_009275	20818.0	Mm.273053	NM_009275	ENSMUSG00000032553	Srprb	AA409543	signal recognition particle receptor, B subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89915395-2	chr3	89915295	89915495	+	580.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-2199.0	NM_010559	16194.0	Mm.2856	NM_010559	ENSMUSG00000027947	Il6ra	CD126|IL-6R|IL-6R-alpha|IL-6RA|Il6r	interleukin 6 receptor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-122924407-4	chr7	122924297	122924497	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	46062.0	NR_045614	73951.0	Mm.389936	NR_045614		4930413G21Rik	-	RIKEN cDNA 4930413G21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-77968963-2	chr10	77968863	77969063	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_138301, intron 2 of 33)	intron (NM_138301, intron 2 of 33)	909.0	NM_138301	28240.0	Mm.276762	NM_138301	ENSMUSG00000009292	Trpm2	9830168K16Rik|C79133|LTRPC2|TRPC7|Trp7|Trrp7	transient receptor potential cation channel, subfamily M, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-122635558-4	chr6	122635489	122635689	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9165.0	NM_139218	73708.0	Mm.27982	NM_139218	ENSMUSG00000046323	Dppa3	2410075G02Rik|PCG7|PGC7|Stella	developmental pluripotency-associated 3	protein-coding	5.29233438587391	5.49404296175538	4.22179197020261	5.17667347824572	5.04001375033654	4.92077115504265	5.37214044299585	5.68698080130556	0.194411692073708	0.572498181906047	0.963911477197412
Merged-chr19-55587936-4	chr19	55587850	55588050	+	997.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360431, intron 8 of 8)	intron (NM_001360431, intron 8 of 8)	114254.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-152780021-2	chr2	152779921	152780121	+	633.166626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001289717)	TTS (NM_001289717)	25848.0	NM_053091	84682.0	Mm.196668	NM_053091	ENSMUSG00000009876	Cox4i2	Cox4b|CoxIV-2	cytochrome c oxidase subunit 4I2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-28197900-3	chr2	28197847	28198047	+	862.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038613, intron 1 of 5)	intron (NM_001038613, intron 1 of 5)	4854.0	NM_001038614	56177.0	Mm.43278	NM_019498	ENSMUSG00000026833	Olfm1	AMY|AW742568|Noe1|OlfA|Pancortin|Pancortin3	olfactomedin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-8717922-2	chr11	8717822	8718022	+	725.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53387.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-32615609-2	chr11	32615509	32615709	+	652.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 16 of 18)	intron (NM_009288, intron 16 of 18)	-26946.0	NM_001271348	103583.0	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	1.0426572678197	1.71248999366756	1.41993096484452	0.729324456579776	0.712909088840889	1.61727303728278	1.43331699849368	0.731325647725356	-0.322570166635181	0.826024915769969	0.998431161219273
Merged-chr2-181600039-2	chr2	181599939	181600139	+	963.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172676)	promoter-TSS (NM_172676)	-892.0	NM_172676	229011.0	Mm.205422	NM_172676	ENSMUSG00000038605	Samd10	D930033N23Rik|E130318E08	sterile alpha motif domain containing 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-75677044-4	chr10	75676948	75677148	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172549, intron 29 of 36)	intron (NM_172549, intron 29 of 36)	-33040.0	NM_027890	71733.0	Mm.247956	NM_027890	ENSMUSG00000006342	Susd2	1200011D11Rik	sushi domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46000001-4	chr8	45999905	46000105	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039562)	promoter-TSS (NM_001039562)	-155.0	NM_001039562	654824.0	Mm.334517	NM_001039562	ENSMUSG00000050914	Ankrd37	-	ankyrin repeat domain 37	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-82564715-2	chr11	82564615	82564815	+	679.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68638.0	NR_033582	791422.0	Mm.341562	NR_033582	ENSMUSG00000069796	Gm11426	-	predicted gene 11426	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-137623724-2	chr3	137623624	137623824	+	639.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030143)	promoter-TSS (NM_030143)	52.0	NM_030143	73284.0	Mm.250841	NM_030143	ENSMUSG00000046818	Ddit4l	1700037B15Rik|1700108M02Rik|REDD2|RTP801L|Smhs1	DNA-damage-inducible transcript 4-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-68611528-2	chr14	68611428	68611628	+	726.166626	f1_balb.idr|f1_c57bl6.idr	intron (NR_102399, intron 17 of 21)	MTEa|LTR|ERVL-MaLR	-29456.0	NM_021475	58860.0	Mm.36742	NM_021475	ENSMUSG00000022057	Adamdec1	2210414L24Rik|AI574231|Dcsn	ADAM-like, decysin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191305689-2	chr1	191305544	191305744	+	912.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12474.0	NM_025424	66208.0	Mm.46444	NM_025424	ENSMUSG00000037499	Nenf	1110060M21Rik|SCIRP10|Spuf	neuron derived neurotrophic factor	protein-coding	2.21266997196259	1.28253443113421	2.04617272743154	1.46897067061018	2.02150194412856	3.02274561245976	2.06273825007383	2.44593121769583	1.52686855619687	0.112381037838201	0.52504564497774
Merged-chr18-84854073-4	chr18	84853919	84854119	+	858.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001348159, intron 1 of 5)	intron (NM_001348159, intron 1 of 5)	2681.0	NM_001348159	109672.0	Mm.31018	NM_025797	ENSMUSG00000024646	Cyb5a	0610009N12Rik|Cyb5	cytochrome b5 type A (microsomal)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75534511-3	chr11	75534372	75534572	+	867.714294	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199284, intron 2 of 13)	intron (NM_001199284, intron 2 of 13)	2360.0	NM_001199283	215113.0	Mm.11186	NM_173388	ENSMUSG00000038178	Slc43a2	7630402D21Rik|BC042513|Lat4	solute carrier family 43, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99818715-5	chr15	99818636	99818836	+	765.700012	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113545, intron 4 of 10)	intron (NM_001113545, intron 4 of 10)	1413.0	NM_023063	65970.0	Mm.33207	NM_023063	ENSMUSG00000023022	Lima1	Eplin	LIM domain and actin binding 1	protein-coding	1.21317730191226	2.60665143920727	0.858340903516925	1.7331227165734	0.810299790352801	2.01055490863328	0.863769689844711	1.61391495219809	-0.97448406391535	0.460992470415073	0.920953234475195
Merged-chr15-80784667-2	chr15	80784567	80784767	+	795.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144812, intron 3 of 24)	intron (NM_144812, intron 3 of 24)	-13943.0	NM_177124	213988.0	Mm.131328	NM_144812	ENSMUSG00000047888	Tnrc6b	2700090M07Rik|A730065C02Rik|AI848765|D230019K20Rik	trinucleotide repeat containing 6b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83647692-2	chr6	83647592	83647792	+	557.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016751, intron 4 of 6)	MER5A|DNA|hAT-Charlie	8424.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-16797495-2	chr1	16797348	16797548	+	678.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	108992.0	NM_001159711	17087.0	Mm.116844	NM_016923	ENSMUSG00000025779	Ly96	ESOP-1|MD-2|MD2	lymphocyte antigen 96	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30414960-2	chr2	30414860	30415060	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007760, intron 1 of 13)	intron (NM_007760, intron 1 of 13)	788.0	NM_007760	12908.0	Mm.20396	NM_007760	ENSMUSG00000026853	Crat	AW107812|CARAT	carnitine acetyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-20424318-4	chr16	20424191	20424391	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176839, intron 1 of 6)	intron (NM_176839, intron 1 of 6)	2103.0	NM_013790	27416.0	Mm.20845	NM_013790	ENSMUSG00000022822	Abcc5	2900011L11Rik|AI132311|Abcc5a|Abcc5b|Mrp5	ATP-binding cassette, sub-family C (CFTR/MRP), member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83641246-2	chr6	83641146	83641346	+	934.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1-int|LTR|ERVL-MaLR	14870.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153197285-2	chr2	153197185	153197385	+	620.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133847, intron 12 of 17)	intron (NM_133847, intron 12 of 17)	28156.0	NM_198617	241732.0	Mm.277243	NM_198617	ENSMUSG00000074671	Tspyl3	AW212607|Gm36	TSPY-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-46736349-2	chr17	46736249	46736449	+	634.400024	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001305990, exon 4 of 4)	3' UTR (NM_001305990, exon 4 of 4)	-7184.0	NM_010321	14711.0	Mm.29395	NM_010321	ENSMUSG00000002769	Gnmt	-	glycine N-methyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-63883443-1	chr4	63883343	63883543	+	601.0	f0_balb.idr	Intergenic	Intergenic	-22159.0	NM_009403	21949.0	Mm.4664	NM_009403	ENSMUSG00000028362	Tnfsf8	CD153|CD30LG|Cd30l|Tnlg3a	tumor necrosis factor (ligand) superfamily, member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-43527685-2	chr19	43527585	43527785	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3080.0	NM_010324	14718.0	Mm.19039	NM_010324	ENSMUSG00000025190	Got1	AI789014|Got-1|cAspAT|cCAT	glutamic-oxaloacetic transaminase 1, soluble	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-155673777-2	chr2	155673677	155673877	+	660.900024	f1_balb.idr|f1_c57bl6.idr	intron (NM_019828, intron 1 of 18)	B3|SINE|B2	18607.0	NM_019828	56407.0	Mm.234944	NM_019828	ENSMUSG00000038324	Trpc4ap	4833429F06Rik|D2Ertd113e|Trrp4ap|mFLJ00177|truss	transient receptor potential cation channel, subfamily C, member 4 associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-4163967-2	chr12	4163867	4164067	+	700.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159537, intron 2 of 21)	B1_Mus2|SINE|Alu	29814.0	NM_138305	104111.0	Mm.489807	NM_138305	ENSMUSG00000020654	Adcy3	AC3|mKIAA0511	adenylate cyclase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-113165351-2	chr11	113165304	113165504	+	830.5	f0_c57.idr|f1_balb.idr	intron (NR_015556, intron 1 of 2)	intron (NR_015556, intron 1 of 2)	36434.0	NR_015556	72386.0	Mm.266961	NR_015556	ENSMUSG00000087259	2610035D17Rik	-	RIKEN cDNA 2610035D17 gene	ncRNA	0.64186849384626	1.56528959553869	0.952641699883591	0.672161946361881	1.22275631414052	1.22835095104829	2.60232903854759	0.926938129750323	2.14031712889395	0.112843102400929	0.526259993239055
Merged-chr16-97540416-3	chr16	97540313	97540513	+	749.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013606, intron 2 of 13)	intron (NM_013606, intron 2 of 13)	4330.0	NM_013606	17858.0	Mm.14157	NM_013606	ENSMUSG00000023341	Mx2	AI528743|Mx-2	MX dynamin-like GTPase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-134692053-2	chr7	134691953	134692153	+	675.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033420, intron 1 of 51)	MLT1C|LTR|ERVL-MaLR	21366.0	NM_001033420	330662.0	Mm.436572	NM_001033420	ENSMUSG00000058325	Dock1	9130006G06Rik|AI854900|D630004B07Rik|b2b3190Clo	dedicator of cytokinesis 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70577715-4	chr14	70577622	70577822	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360475)	promoter-TSS (NM_001360475)	-102.0	NM_153136	213484.0	Mm.34191	NM_153136	ENSMUSG00000045211	Nudt18	BC036718	nudix (nucleoside diphosphate linked moiety X)-type motif 18	protein-coding	5.35012429617784	5.70514353679482	5.46159631094956	5.14758147392051	5.38741017360545	5.71257605940855	5.34639379329493	5.17091696606968	-0.0134493010693044	0.961941362771738	0.998431161219273
Merged-chr7-122415605-4	chr7	122415497	122415697	+	939.55835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316672, intron 2 of 16)	intron (NM_001316672, intron 2 of 16)	126472.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-47176869-2	chr19	47176769	47176969	+	550.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TCCC)n|Simple_repeat|Simple_repeat	-1951.0	NM_021360	18011.0	Mm.313651	NM_021360	ENSMUSG00000006435	Neurl1a	2410129E16Rik|AI450910|AI481072|Neu1|Neur1|Neurl|Neurl1|Nlz|Rnf67	neuralized E3 ubiquitin protein ligase 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96172475-4	chr3	96172405	96172605	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153053)	promoter-TSS (NM_153053)	-1.0	NM_153053	107701.0	Mm.219671	NM_153053	ENSMUSG00000068856	Sf3b4	SF3b49|SF3b50|Sap49	splicing factor 3b, subunit 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-32394554-4	chr18	32394433	32394633	+	970.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360876, intron 1 of 17)	LTR16B|LTR|ERVL	-16249.0	NR_045403	402767.0	Mm.385109	NR_045403	ENSMUSG00000097413	A830052D11Rik	-	RIKEN cDNA A830052D11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-144892373-4	chr4	144892286	144892486	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001172424)	promoter-TSS (NM_001172424)	-441.0	NM_001172424	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-65810952-1	chr15	65810852	65811052	+	640.0	f0_balb.idr	intron (NM_133766, intron 1 of 22)	intron (NM_133766, intron 1 of 22)	23932.0	NM_001356582	76740.0	Mm.260647	NM_133766	ENSMUSG00000015002	Efr3a	A130089M23Rik|BB071175|C76891|C920006C10Rik|D030063F01Rik|mKIAA0143	EFR3 homolog A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-111678269-4	chr8	111678172	111678372	+	618.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11402.0	NR_106044	102466993.0		NR_106044	ENSMUSG00000099129	Mir7076	Gm27318|mmu-mir-7076	microRNA 7076	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6489226-3	chr19	6489135	6489335	+	862.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205234, intron 12 of 22)	intron (NM_001205234, intron 12 of 22)	53835.0	NM_009203	20521.0	Mm.391146	NM_009203	ENSMUSG00000061742	Slc22a12	AI987855|OAT4L|Rst|Slc22al2|URAT1	solute carrier family 22 (organic anion/cation transporter), member 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-66921167-1	chr9	66921067	66921267	+	545.0	f1_balb.idr	Intergenic	Intergenic	-1462.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118670603-2	chr9	118670503	118670703	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 9 of 27)	intron (NM_133721, intron 9 of 27)	-41089.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-107322931-4	chr11	107322838	107323038	+	953.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359616, intron 2 of 8)	intron (NM_001359616, intron 2 of 8)	-133557.0	NM_001161329	68979.0	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100841016-4	chr11	100840885	100841085	+	687.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113563, intron 1 of 18)	intron (NM_001113563, intron 1 of 18)	9600.0	NM_001113563	20851.0	Mm.34064	NM_011489	ENSMUSG00000020919	Stat5b	-	signal transducer and activator of transcription 5B	protein-coding	2.30017119738767	1.1403111592397	3.06670509652213	2.13860073815994	2.03559591621782	2.31191249807564	1.1148771848187	1.08569699318072	-1.34227820100716	0.241173182374519	0.737728541910355
Merged-chr8-13214093-4	chr8	13213988	13214188	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13464.0	NM_025768	66790.0	Mm.34901	NM_025768	ENSMUSG00000038515	Grtp1	5430401C05Rik|C81211|Tbc1d6	GH regulated TBC protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72023829-3	chr6	72023745	72023945	+	808.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_046180, intron 1 of 2)	intron (NR_046180, intron 1 of 2)	18683.0	NR_046180	330350.0	Mm.246787	NR_046180	ENSMUSG00000108356	9130221F21Rik	9130221F21	RIKEN cDNA 9130221F21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-62321166-1	chr15	62321066	62321266	+	546.0	f1_c57bl6.idr	Intergenic	Intergenic	-101715.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	-1.50625708474172	-1.47450015558371	-1.18188810879543	-1.49199236114635	-1.35376801888298	-1.47241902461194	-1.48192967816727	-1.49058029691424	-0.80106305596974	0.819335975698342	1
Merged-chr9-66939041-4	chr9	66938941	66939141	+	933.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7045.0	NM_001311101	67941.0	Mm.30120	NM_026467	ENSMUSG00000036781	Rps27l	1810034D23Rik	ribosomal protein S27-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-65502978-4	chr18	65502866	65503066	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_105742, intron 3 of 6)	RLTR19-int|LTR|ERVK	71969.0	NM_172833	240354.0	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	4.81961212474968	4.30038538982183	4.28953351087647	5.12127547482041	5.57850119896161	5.54040092320408	5.9700954742393	6.07590888851157	1.29820210635846	3.66536003243323e-05	0.00136351293648396
Merged-chr16-76429611-3	chr16	76429506	76429706	+	868.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55779.0	NM_001358238	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105500081-4	chr8	105499965	105500165	+	933.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-3163.0	NM_175160	70796.0	Mm.100917	NM_175160	ENSMUSG00000039199	Zdhhc1	4432412D04Rik|DHHC-1	zinc finger, DHHC domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-113752476-4	chr11	113752381	113752581	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163346)	promoter-TSS (NM_001163346)	-666.0	NM_001163346	56699.0	Mm.293378	NM_020006	ENSMUSG00000041598	Cdc42ep4	1500041M20Rik|Borg4|CEP4	CDC42 effector protein (Rho GTPase binding) 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-137612702-1	chr4	137612602	137612802	+	569.0	f1_c57bl6.idr	intron (NM_001355588, intron 8 of 26)	intron (NM_001355588, intron 8 of 26)	18530.0	NM_130879	170707.0	Mm.218478	NM_130879	ENSMUSG00000043411	Usp48	2810449C13Rik|AI115503|BC021769|D330022K21Rik|Usp31	ubiquitin specific peptidase 48	protein-coding	-1.29633872064033	-1.26720680975202	-1.27768629845203	-1.28629446248818	-0.70879630402184	-1.2649358608345	-1.2753139719142	-1.28475360524138	2.50884260628271	0.468217847016783	1
Merged-chr11-119042501-2	chr11	119042360	119042560	+	594.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG-2901	-1547.0	NM_013926	30951.0	Mm.99953	NM_013926	ENSMUSG00000025578	Cbx8	Pc3	chromobox 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-124671684-4	chr2	124671598	124671798	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	18117.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72789377-8	chr6	72789216	72789416	+	999.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009332)	promoter-TSS (NM_009332)	-271.0	NM_009332	21415.0	Mm.440067	NM_009332	ENSMUSG00000055799	Tcf7l1	Tcf-3|Tcf3|bHLHb21	transcription factor 7 like 1 (T cell specific, HMG box)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-23987935-4	chr11	23987870	23988070	+	934.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-90086.0	NM_016707	14025.0	Mm.53687	NM_016707	ENSMUSG00000000861	Bcl11a	2810047E18Rik|BCL-11A|Ctip1|D930021L15Rik|Evi9|Evi9a|Evi9b|Evi9c|mKIAA1809	B cell CLL/lymphoma 11A (zinc finger protein)	protein-coding	3.21192828898661	3.59633025990485	1.79056504038144	2.4678913948104	3.23845672982884	3.62198470196884	1.80572037709211	2.48163240282131	0.0388271882623033	0.961713315518934	0.998431161219273
Merged-chr19-53365118-2	chr19	53365018	53365218	+	651.93335	f1_balb.idr|f1_c57bl6.idr	intron (NM_001008543, intron 3 of 5)	intron (NM_001008543, intron 3 of 5)	24923.0	NM_001356986	76479.0	Mm.313687	NM_172429	ENSMUSG00000025024	Smndc1	-	survival motor neuron domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-140961969-2	chr4	140961869	140962069	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355515, intron 1 of 7)	intron (NM_001355515, intron 1 of 7)	698.0	NM_023374	67680.0	Mm.246965	NM_023374	ENSMUSG00000009863	Sdhb	0710008N11Rik	succinate dehydrogenase complex, subunit B, iron sulfur (Ip)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-30630185-4	chr13	30630081	30630281	+	765.799988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15138.0	NR_045975	75090.0	Mm.292232	NR_045975	ENSMUSG00000086263	4930519D14Rik	-	RIKEN cDNA 4930519D14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-109427276-2	chr11	109427176	109427376	+	920.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252193, intron 2 of 7)	intron (NM_001252193, intron 2 of 7)	1056.0	NM_001252193	13929.0	Mm.211850	NM_025275	ENSMUSG00000020610	Amz2	AA408420|ESTM12|X83328	archaelysin family metallopeptidase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-50062348-5	chr14	50062275	50062475	+	978.2999880000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	22304.0	NM_146316	258313.0	Mm.463727	NM_146316	ENSMUSG00000060523	Olfr726	MOR246-4	olfactory receptor 726	protein-coding	-0.953721354153451	-1.41025554057125	-1.42001056191158	-1.42802362688808	-1.44024889148474	-1.40814158675276	-1.41780223890411	-1.42658929208844	-2.11310844444413	0.543369238581748	1
Merged-chr3-8959931-2	chr3	8959950	8960150	+	641.924988	f1_balb.idr|f1_c57bl6.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	4096.0	NM_001025262	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-114789804-3	chr9	114789731	114789931	+	585.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027294, intron 3 of 3)	intron (NM_027294, intron 3 of 3)	-7838.0	NM_001252479	102545.0	Mm.35600	NM_133978	ENSMUSG00000032436	Cmtm7	AI481279|Cklfsf7|LNV	CKLF-like MARVEL transmembrane domain containing 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-23739560-4	chr17	23739474	23739674	+	886.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023824, intron 1 of 2)	intron (NM_023824, intron 1 of 2)	756.0	NM_023824	76498.0	Mm.491253	NM_023824	ENSMUSG00000023909	Paqr4	1500004C10Rik	progestin and adipoQ receptor family member IV	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-34252873-2	chr13	34252773	34252973	+	609.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033167, intron 3 of 10)	ORR1F|LTR|ERVL-MaLR	89909.0	NM_001110515	69666.0	Mm.24788	NM_001101430	ENSMUSG00000071451	Psmg4	PAC-4|mPAC4	proteasome (prosome, macropain) assembly chaperone 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-20505655-4	chr10	20505567	20505767	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013875, intron 2 of 12)	intron (NM_013875, intron 2 of 12)	42661.0	NM_001347366	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94688628-4	chr10	94688520	94688720	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015524)	promoter-TSS (NR_015524)	-7.0	NR_015524	67723.0	Mm.116284	NR_015524		Cep83os	4932415G12Rik|Ccdc41os1	centrosomal protein 83, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-104028834-1	chr14	104028734	104028934	+	598.0	f0_balb.idr	Intergenic	Intergenic	-1692.0	NR_045953	73877.0	Mm.399172	NR_045953	ENSMUSG00000115727	4930432J09Rik	-	RIKEN cDNA 4930432J09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-52031474-3	chr3	52031382	52031582	+	766.483337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	73524.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-20897359-3	chr9	20897224	20897424	+	919.93335	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016876, intron 5 of 10)	B4A|SINE|B4	1266.0	NM_016876	53356.0	Mm.427309	NM_016876	ENSMUSG00000070319	Eif3g	44kDa|D0Jmb4|Eif3s4|TU-189B2|eIF3-p44|p44	eukaryotic translation initiation factor 3, subunit G	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-80934046-4	chr18	80933950	80934150	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001201569)	promoter-TSS (NM_001201569)	8.0	NM_001201569	50771.0	Mm.247138	NM_015805	ENSMUSG00000024566	Atp9b	AA934181|Atpc2b|IIb|MMR	ATPase, class II, type 9B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69390586-4	chr11	69390466	69390666	+	855.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4780.0	NM_001045525	327951.0	Mm.415669	NM_001045525	ENSMUSG00000044795	Cyb5d1	Gm740	cytochrome b5 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-29873898-2	chr2	29873798	29873998	+	847.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_207298, intron 5 of 11)	intron (NM_207298, intron 5 of 11)	4404.0	NM_207298	99151.0	Mm.296336	NM_207298	ENSMUSG00000039787	Cercam	2600006K01Rik|AL024097|Ceecam1	cerebral endothelial cell adhesion molecule	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-86896291-2	chr12	86896191	86896391	+	787.125	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11477.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141460098-2	chr7	141459998	141460198	+	577.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001025103)	promoter-TSS (NM_001025103)	-996.0	NM_001025103	213573.0	Mm.386851	NM_001025103	ENSMUSG00000048200	Cracr2b	6330520A15Rik|BC026645|Cracr2a|Efcab4|Efcab4a	calcium release activated channel regulator 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59823338-3	chr15	59823243	59823443	+	962.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28384.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-58262263-4	chr15	58262168	58262368	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47376.0	NM_026346	67731.0	Mm.25683	NM_026346	ENSMUSG00000022358	Fbxo32	4833442G10Rik|AI430017|ATROGIN1|Gm20361|MAFbx	F-box protein 32	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100396728-4	chr11	100396663	100396863	+	909.9097289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010593, intron 1 of 13)	intron (NM_010593, intron 1 of 13)	1027.0	NM_010593	16480.0	Mm.299774	NM_010593	ENSMUSG00000001552	Jup	Ctnng|D930025P04Rik|PG	junction plakoglobin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-113735707-4	chr5	113735616	113735816	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001010825)	promoter-TSS (NM_001010825)	-66.0	NM_001010825	231630.0	Mm.21926	NM_001010825	ENSMUSG00000053334	Ficd	D5Ertd40e|Hype	FIC domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-79869250-2	chr7	79869150	79869350	+	732.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21040.0	NM_008486	16790.0	Mm.4487	NM_008486	ENSMUSG00000039062	Anpep	AP-M|AP-N|Apn|Cd13|P150	alanyl (membrane) aminopeptidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-137115428-2	chr5	137115328	137115528	+	642.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_201373, intron 1 of 2)	intron (NM_201373, intron 1 of 2)	779.0	NM_201373	384309.0	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-125098495-2	chr5	125098395	125098595	+	646.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253905, intron 3 of 42)	intron (NM_001253905, intron 3 of 42)	80719.0	NM_001253905	20602.0	Mm.278646	NM_011424	ENSMUSG00000029478	Ncor2	N-CoR|SMRT|SMRTe	nuclear receptor co-repressor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-56556174-4	chr19	56556047	56556247	+	978.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025811, intron 2 of 10)	intron (NM_025811, intron 2 of 10)	7886.0	NM_025811	66866.0	Mm.46346	NM_025811	ENSMUSG00000025078	Nhlrc2	1200003G01Rik|AI835049|AV002846|AW496455	NHL repeat containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3943044-2	chr19	3942944	3943144	+	652.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_019449, intron 7 of 10)	intron (NM_019449, intron 7 of 10)	7858.0	NM_001161428	54445.0	Mm.262094	NM_019449	ENSMUSG00000036908	Unc93b1	Unc-93B1|Unc93b	unc-93 homolog B1 (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-11015373-2	chr4	11015273	11015473	+	625.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7754.0	NM_175175	71801.0	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115160041-2	chr5	115159941	115160141	+	639.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1865.0	NM_175403	109154.0	Mm.153963	NM_175403	ENSMUSG00000048578	Mlec	2410014A08Rik|AI850530|ESTM19|X83352|mKIAA0152	malectin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191115076-4	chr1	191114985	191115185	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16671.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	1.82706787481475	1.03040399114721	2.28055608672946	0.989435279394181	2.24732360728949	1.83963549817397	1.77280851081252	0.992647011132135	0.354602605150337	0.779893914872662	0.998431161219273
Merged-chr8-108827628-4	chr8	108827536	108827736	+	996.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007496, intron 3 of 9)	intron (NM_007496, intron 3 of 9)	-109224.0	NR_037295	100526511.0		NR_037295	ENSMUSG00000093241	Mir3108	mir-3108|mmu-mir-3108	microRNA 3108	ncRNA	1.09417213120058	2.94413458334342	1.20271229328111	0.88837939096281	2.19074861401065	1.26192033841842	0.921976730379427	2.70082085514545	0.20746127345739	0.867958194564077	0.998431161219273
Merged-chr15-81586743-2	chr15	81586643	81586843	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177821, intron 1 of 30)	CpG-5131	529.0	NM_177821	328572.0	Mm.258397	NM_177821	ENSMUSG00000055024	Ep300	A430090G16|A730011L11|KAT3B|p300|p300 HAT	E1A binding protein p300	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-136322788-4	chr3	136322676	136322876	+	880.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033350, intron 1 of 16)	intron (NM_001033350, intron 1 of 16)	3290.0	NM_001310749	242248.0	Mm.30832	NM_001033350	ENSMUSG00000037922	Bank1	A530094C12Rik|AI451642|AVIEF|BANK	B cell scaffold protein with ankyrin repeats 1	protein-coding	3.70760051766103	4.39857580633828	3.74713823996802	3.01512108338948	3.48808614925603	4.1021992676794	3.53935671463576	2.77332821537071	-0.366782893919972	0.515390974161358	0.947402641287243
Merged-chr9-62351410-2	chr9	62351310	62351510	+	603.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009672, intron 1 of 6)	intron (NM_009672, intron 1 of 6)	10067.0	NM_009672	11737.0	Mm.269088	NM_009672	ENSMUSG00000032249	Anp32a	Anp32|I1PP2A|LANP|PHAP1|W91701|pp32	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191096510-1	chr1	191096410	191096610	+	809.0	f1_c57bl6.idr	Intergenic	B1_Mur3|SINE|Alu	-1904.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70840715-2	chr8	70840615	70840815	+	726.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027560)	promoter-TSS (NM_027560)	-995.0	NM_027560	70807.0	Mm.24215	NM_027560	ENSMUSG00000002910	Arrdc2	4632416I05Rik|Ilad1	arrestin domain containing 2	protein-coding	0.850135716456992	1.11795306637864	1.6484223165706	1.06281731868798	1.30519031586653	1.83497470793704	1.26878108627256	1.60591670103725	1.20226453577497	0.341751476232185	0.842759215970827
Merged-chr11-97511530-2	chr11	97511471	97511671	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_018873, exon 20 of 20)	3' UTR (NM_018873, exon 20 of 20)	-11231.0	NM_001289118	100141474.0	Mm.482426	NM_001289118	ENSMUSG00000047988	4933428G20Rik	-	RIKEN cDNA 4933428G20 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-112331383-3	chr13	112331248	112331448	+	852.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168403, intron 5 of 11)	intron (NM_001168403, intron 5 of 11)	42830.0	NM_001168404	77318.0	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	1.92933696838507	2.23223847518603	3.63079754147303	1.82303539191797	3.97424909081151	3.92676165042235	4.45001596455899	3.86402186580019	2.22065020894995	0.000775209963930304	0.015782187467029
Merged-chr2-60046215-4	chr2	60046114	60046314	+	995.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001182, intron 2 of 35)	intron (NM_001001182, intron 2 of 35)	79526.0	NM_001001182	407823.0	Mm.228071	NM_001001182	ENSMUSG00000026987	Baz2b	5830435C13Rik|BC053917|D2Ertd794e	bromodomain adjacent to zinc finger domain, 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-18766606-2	chr2	18766506	18766706	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5744.0	NR_126079	100041479.0	Mm.393659	NR_126079	ENSMUSG00000092353	Gm3363	-	predicted gene 3363	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-37287866-2	chr12	37287766	37287966	+	714.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178767, intron 3 of 12)	ORR1E|LTR|ERVL-MaLR	46227.0	NM_178767	319660.0	Mm.485540	NM_178767	ENSMUSG00000050103	Agmo	A530016O06Rik|AI790538|Tmem195	alkylglycerol monooxygenase	protein-coding	0.608249993142161	1.30840607025918	0.630369560827248	1.49158673437729	1.03668766672	1.03778462271938	1.14102004685529	0.623556325704366	-0.483357838420343	0.757206572496081	0.998431161219273
Merged-chr9-92458579-3	chr9	92458464	92458664	+	754.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178711, intron 1 of 8)	intron (NM_178711, intron 1 of 8)	1186.0	NM_178711	235527.0	Mm.55289	NM_178711	ENSMUSG00000032377	Plscr4	AV245873	phospholipid scramblase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-142319551-3	chr5	142319435	142319635	+	831.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-81962.0	NM_199068	17425.0	Mm.24214	NM_010812	ENSMUSG00000056493	Foxk1	A630048H08Rik|AI463295|Gm10868|Mnf	forkhead box K1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-32349536-2	chr9	32349436	32349636	+	757.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5299.0	NM_010605	16521.0	Mm.69472	NM_010605	ENSMUSG00000032034	Kcnj5	GIRK4|Kir3.4	potassium inwardly-rectifying channel, subfamily J, member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-111659252-4	chr8	111659176	111659376	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011742, intron 2 of 3)	MERVL_2A-int|LTR|ERVL	15833.0	NM_011742	22640.0	Mm.4184	NM_011742	ENSMUSG00000055835	Zfp1	Fnp-1|Zfp-1|mkr-1	zinc finger protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-75860254-4	chr10	75860093	75860293	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010798)	promoter-TSS (NM_010798)	57.0	NM_010798	17319.0	Mm.2326	NM_010798	ENSMUSG00000033307	Mif	GIF|Glif	macrophage migration inhibitory factor (glycosylation-inhibiting factor)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-142400223-3	chr7	142400110	142400310	+	647.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12340.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	-1.23903428676898	-1.21247619063903	-0.773796758324356	-1.0691861411012	-1.23858656970828	-1.21019279803287	-1.22062777608213	-1.23011913398008	-2.46136296935986	0.456349361189979	1
Merged-chr9-57561940-4	chr9	57561841	57562041	+	947.3583369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022813, intron 1 of 8)	intron (NM_022813, intron 1 of 8)	997.0	NM_022813	24044.0	Mm.286069	NM_022813	ENSMUSG00000040188	Scamp2	AI875466|Sc2	secretory carrier membrane protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-95861506-3	chr16	95861401	95861601	+	900.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040484, intron 1 of 3)	intron (NR_040484, intron 1 of 3)	37212.0	NR_040485	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-100429160-3	chr12	100429045	100429245	+	812.288879	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033213, intron 5 of 19)	intron (NM_001033213, intron 5 of 19)	91677.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-100614275-4	chr5	100614171	100614371	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42066.0	NM_139198	231507.0	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	6.56612655703161	6.05840738766295	6.55530016014026	6.07757937814041	6.66822615226072	6.68931808678698	7.04227310323924	5.8211270592771	0.300549537116568	0.235238716736133	0.731442844695956
Merged-chr10-80625889-2	chr10	80625789	80625989	+	800.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134002, intron 1 of 10)	intron (NM_134002, intron 1 of 10)	3109.0	NM_134002	103236.0	Mm.29873	NM_134002	ENSMUSG00000003345	Csnk1g2	2810429I12Rik|AI463719	casein kinase 1, gamma 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-94582213-4	chr1	94582104	94582304	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-215238.0	NR_040473	74689.0	Mm.399187	NR_040473	ENSMUSG00000100518	4930440C22Rik	-	RIKEN cDNA 4930440C22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-105265248-4	chr4	105265154	105265354	+	868.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	107907.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101615796-3	chr7	101615724	101615924	+	726.533325	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34663.0	NM_019915	11872.0	Mm.57008	NM_019915	ENSMUSG00000030651	Art2b	ART2.2|ARTC2|Art|Ly92b|Rt-6|Rt6|Rt6-2	ADP-ribosyltransferase 2b	protein-coding	0.459558015968661	1.37044647330345	0.487073939189865	1.68567397774877	0.462170916668262	0.748070147619302	1.19867241678521	0.478680611181486	-1.50161366727215	0.378467758608749	0.871397690824179
Merged-chr14-76332368-1	chr14	76332268	76332468	+	560.0	f0_c57.idr	Intergenic	Intergenic	80906.0	NR_152108	72893.0	Mm.233565	NR_152108		2900040C04Rik	-	RIKEN cDNA 2900040C04 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-86857381-4	chr4	86857263	86857463	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009096)	promoter-TSS (NM_009096)	4.0	NM_009096	20104.0	Mm.379007	NM_009096	ENSMUSG00000028495	Rps6	S6R	ribosomal protein S6	protein-coding	6.45298006155061	6.76447754042406	6.72695382546227	6.48042829807981	6.10659045380569	6.53919594962456	6.65982763770225	6.85578067904472	-0.0499187335996121	0.812390097022095	0.998431161219273
Merged-chr4-156108859-10	chr4	156108780	156108980	+	962.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1118.0	NM_145557	230996.0	Mm.318925	NM_145557	ENSMUSG00000059939	9430015G10Rik	-	RIKEN cDNA 9430015G10 gene	protein-coding	0.47961047543441	0.352123425395192	1.04046581605056	0.511105120711204	0.731563253918327	0.353848213011423	0.346144452308852	1.09355304285164	0.260712610511421	0.882485768231005	1
Merged-chr7-127769846-4	chr7	127769750	127769950	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198424)	promoter-TSS (NM_198424)	35.0	NM_198424	269999.0	Mm.36852	NM_198424	ENSMUSG00000043964	Orai3	9930124N15|BC061259|Tmem142c	ORAI calcium release-activated calcium modulator 3	protein-coding	3.87614709210915	3.92351727479129	4.97477843632097	3.82682117540149	4.70034635736674	2.23499333137218	5.32278283740663	3.22110803940607	0.137025937399668	0.884760001419004	0.998431161219273
Merged-chr3-101601830-2	chr3	101601730	101601930	+	611.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144900, intron 1 of 22)	intron (NM_144900, intron 1 of 22)	2877.0	NM_144900	11928.0	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-139648244-1	chr7	139648144	139648344	+	565.0	f1_balb.idr	intron (NM_001302546, intron 22 of 58)	intron (NM_001302546, intron 22 of 58)	35571.0	NM_001302546	212124.0	Mm.425507	NM_177212	ENSMUSG00000049571	Cfap46	9330101J02Rik|E030019B06Rik|Gm170|Ttc40	cilia and flagella associated protein 46	protein-coding	1.68176295980417	1.89022009277259	1.19323170486303	2.73356416730534	2.33264672179773	2.32556772580594	1.19978656494996	2.27501231033752	0.228902582789184	0.832072271839425	0.998431161219273
Merged-chr5-148818406-1	chr5	148818306	148818506	+	999.0	f1_balb.idr	Intergenic	Intergenic	40443.0	NR_131106	78015.0	Mm.243839	NR_131106	ENSMUSG00000085740	4930505K14Rik	-	RIKEN cDNA 4930505K14 gene	ncRNA	1.89588729585841	1.64851592389254	0.889145972162793	1.08524716431362	2.04914314969083	0.910227438617176	1.11952096191963	1.54561999464276	0.136873799587092	0.917106711268415	0.998431161219273
Merged-chr1-133146142-3	chr1	133146022	133146222	+	736.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14956.0	NM_133819	108954.0	Mm.293628	NM_133819	ENSMUSG00000046062	Ppp1r15b	1810033K10Rik|AI606441|C530022L24Rik|CReP	protein phosphatase 1, regulatory (inhibitor) subunit 15b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-62557266-3	chr11	62557187	62557387	+	759.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	5556.0	NM_001313984	22187.0	Mm.371592	NM_011664	ENSMUSG00000019505	Ubb	AL033289|Rps27a|Uba52|Ubb2|Ubc	ubiquitin B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-112811081-2	chr13	112811014	112811214	+	581.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008903, intron 1 of 5)	intron (NM_008903, intron 1 of 5)	10337.0	NM_008247	19012.0	Mm.291029	NM_008247	ENSMUSG00000021759	Plpp1	Hic53|Hpic53|LPP-1|LPP1|PAP-2a|PAP2-alpha|PAP2a|Ppap2a|mPAP	phospholipid phosphatase 1	protein-coding	1.88481643971655	2.1396976899063	2.42821440324529	1.61799009036936	1.2133831673913	2.26646992156615	1.05270211059181	1.03077518700926	-1.49248712910449	0.199700510366563	0.683271879290312
Merged-chr19-6455530-2	chr19	6455430	6455630	+	557.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205235, intron 6 of 21)	intron (NM_001205235, intron 6 of 21)	36792.0	NM_001205234	18190.0	Mm.329616	NM_020253	ENSMUSG00000033768	Nrxn2	6430591O13Rik|mKIAA0921	neurexin II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-4322648-4	chr8	4322555	4322755	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010485, intron 1 of 5)	intron (NM_010485, intron 1 of 5)	2445.0	NM_010485	15568.0	Mm.119162	NM_010485	ENSMUSG00000040028	Elavl1	2410055N02Rik|HUR|Hua|W91709	ELAV (embryonic lethal, abnormal vision)-like 1 (Hu antigen R)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125098050-2	chr6	125097950	125098150	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_106012)	TTS (NR_106012)	1026.0	NR_106012	102466272.0		NR_106012	ENSMUSG00000098762	Mir7045	Gm27758|mmu-mir-7045	microRNA 7045	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-147433247-2	chr4	147433147	147433347	+	547.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039209, intron 1 of 2)	ID_B1|SINE|B4	-120030.0	NM_001014397	433804.0	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154	zinc finger protein 985	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-20938345-2	chr5	20938245	20938445	+	856.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080977, intron 1 of 7)	B1_Mus1|SINE|Alu	-12644.0	NR_030699	320770.0	Mm.491217	NR_030699	ENSMUSG00000101013	A630072M18Rik	Aptr	RIKEN cDNA A630072M18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122435627-2	chr8	122435527	122435727	+	652.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_028354, intron 9 of 10)	B3|SINE|B2	-2687.0	NM_007806	13057.0	Mm.271671	NM_007806	ENSMUSG00000006519	Cyba	b558|nmf333|p22-phox|p22phox	cytochrome b-245, alpha polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117057113-2	chr11	117057013	117057213	+	911.400024	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19670.0	NR_027059	76972.0	Mm.309167	NR_027059	ENSMUSG00000086859	Snhg20	2810008D09Rik	small nucleolar RNA host gene 20	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-70679521-1	chr9	70679421	70679621	+	970.0	f0_balb.idr	intron (NM_007399, intron 1 of 15)	CpG	539.0	NM_007399	11487.0	Mm.3037	NM_007399	ENSMUSG00000054693	Adam10	1700031C13Rik|MADM|kuz|kuzbanian	a disintegrin and metallopeptidase domain 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-18430361-1	chr10	18430261	18430461	+	593.0	f0_balb.idr	intron (NM_173390, intron 1 of 6)	intron (NM_173390, intron 1 of 6)	22686.0	NM_173390	215819.0	Mm.297971	NM_173390	ENSMUSG00000039835	Nhsl1	5730409E15Rik|A630035H13Rik|A730096F01|BC013565|D10Bwg0940e|mKIAA1357	NHS-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-85003728-2	chr10	85003628	85003828	+	752.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_183172, intron 9 of 9)	intron (NM_183172, intron 9 of 9)	86115.0	NM_183172	237422.0	Mm.18936	NM_183172	ENSMUSG00000035620	Ric8b	BC051080|Ric-8|Ric-8b	RIC8 guanine nucleotide exchange factor B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-38931511-4	chr19	38931383	38931583	+	894.633301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008234, exon 2 of 22)	exon (NM_008234, exon 2 of 22)	493.0	NM_008234	15201.0	Mm.57223	NM_008234	ENSMUSG00000025001	Hells	AI323785|E130115I21Rik|LSH|Lysh|PASG|YFK8	helicase, lymphoid specific	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21030957-4	chr9	21030884	21031084	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_023892)	TTS (NM_023892)	-1054.0	NM_008319	15898.0	Mm.4629	NM_008319	ENSMUSG00000032174	Icam5	CD50|ICAM-3|Icam3|TLN|Tlcn	intercellular adhesion molecule 5, telencephalin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-34754707-4	chr6	34754638	34754838	+	787.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145575, intron 4 of 11)	intron (NM_145575, intron 4 of 11)	-25694.0	NM_001289658	76223.0	Mm.150047	NM_178630	ENSMUSG00000038836	Agbl3	2900053G10Rik|4930431N21Rik|6530406M24Rik|CCP3	ATP/GTP binding protein-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-12170167-1	chr18	12170067	12170267	+	572.0	f1_balb.idr	intron (NM_029623, intron 2 of 19)	B1_Mus1|SINE|Alu	1437.0	NM_029623	76482.0	Mm.196596	NM_029623	ENSMUSG00000024410	3110002H16Rik	2400010D15Rik|Mic-1|Mic1|Rmc1|Wdr98	RIKEN cDNA 3110002H16 gene	protein-coding	-0.0503006644494346	-0.365060808268929	-0.371883650148269	-0.377224128603752	-0.384889797967559	-0.363537825417411	0.898121391818238	-0.376286233992421	2.56362536920945	0.30305289467703	1
Merged-chr18-67205367-4	chr18	67205280	67205480	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024190)	promoter-TSS (NM_024190)	21.0	NM_024190	67064.0	Mm.73777	NM_024190	ENSMUSG00000109901	Chmp1b	2810405I11Rik|Chmp1b1	charged multivesicular body protein 1B	protein-coding	7.29132100276876	6.5916346859098	6.65751345013366	7.3395571624616	7.20210890455027	6.57930546736206	6.9123510493861	7.16108324120747	-0.0305146115236972	0.886897959459684	0.998431161219273
Merged-chr17-56715554-2	chr17	56715454	56715654	+	747.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_178926, exon 2 of 2)	exon (NM_178926, exon 2 of 2)	1367.0	NM_178926	106639.0	Mm.37290	NM_178926	ENSMUSG00000054723	Vmac	AI662250	vimentin-type intermediate filament associated coiled-coil protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-65724440-4	chr17	65724351	65724551	+	858.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133685, intron 1 of 6)	intron (NM_133685, intron 1 of 6)	48301.0	NM_133685	106572.0	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-160250486-4	chr2	160250392	160250592	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	77002.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-33203958-4	chr14	33203846	33204046	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-12877.0	NM_153800	239027.0	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-99344965-2	chr5	99344865	99345065	+	761.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 3 of 3)	Lx|LINE|L1	-92038.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-86046196-3	chr1	86046019	86046219	+	803.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001144992, exon 1 of 3)	exon (NM_001144992, exon 1 of 3)	256.0	NM_001144992	72792.0	Mm.54981	NM_001144992	ENSMUSG00000026227	2810459M11Rik	-	RIKEN cDNA 2810459M11 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5843590-7	chr17	5843508	5843708	+	912.357117	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025664, intron 1 of 17)	intron (NM_025664, intron 1 of 17)	2228.0	NM_025664	66616.0	Mm.89515	NM_025664	ENSMUSG00000002365	Snx9	2700073N08Rik|SDP1|SH3PX1	sorting nexin 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-126317482-2	chr4	126317382	126317582	+	669.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133883, intron 4 of 5)	intron (NM_133883, intron 4 of 5)	4221.0	NM_133883	100206.0	Mm.11285	NM_133883	ENSMUSG00000042558	Adprhl2	AI836109|Arh3	ADP-ribosylhydrolase like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124002185-2	chr5	124002085	124002285	+	733.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_145070, exon 32 of 32)	3' UTR (NM_145070, exon 32 of 32)	5333.0	NR_105999	102465625.0		NR_105999	ENSMUSG00000098454	Mir7032	Gm27309|mmu-mir-7032	microRNA 7032	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-8594858-4	chr3	8594765	8594965	+	942.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33186.0	NR_153352	102635065.0		NR_153352	ENSMUSG00000104102	Gm32496	-	predicted gene, 32496	ncRNA	3.65158751917723	4.6969119152048	3.73050697722267	4.30487445554322	4.63166527276053	3.97097263104226	3.9163494669546	3.6429030880414	-0.076340825760997	0.872347758706224	0.998431161219273
Merged-chr4-43285678-2	chr4	43285624	43285824	+	796.083374	f0_balb.idr|f1_balb.idr	intron (NM_177195, intron 2 of 28)	Lx2B|LINE|L1	18565.0	NM_177195	320571.0	Mm.74465	NM_177195	ENSMUSG00000028457	Atp8b5	4930417M19Rik|Feta	ATPase, class I, type 8B, member 5	protein-coding	-0.319123071626636	-0.298286666410701	-0.305012662035227	-0.310267493458869	0.937766684606592	-0.296783385243951	-0.303521074854618	0.0634208340119117	4.12236517524094	0.0834944059369864	1
Merged-chr4-9669812-2	chr4	9669717	9669917	+	672.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023066)	promoter-TSS (NM_023066)	-473.0	NM_001290367	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	-0.196136532861185	-0.175460790921088	0.0247286981215814	0.166240296152418	-0.194824304647786	-0.173961862312761	0.951592718819347	-0.186457484049022	1.71492942139329	0.449549683792078	1
Merged-chr7-44304073-1	chr7	44303973	44304173	+	582.0	f0_c57.idr	3' UTR (NM_009131, exon 4 of 4)	3' UTR (NM_009131, exon 4 of 4)	2886.0	NM_009131	20256.0	Mm.20428	NM_009131	ENSMUSG00000004473	Clec11a	AW457320|Clecsf3|Scgf	C-type lectin domain family 11, member a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102382998-2	chr12	102382898	102383098	+	807.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177620, intron 8 of 9)	B1_Mur1|SINE|Alu	56815.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-46821514-4	chr14	46821410	46821610	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022023, intron 1 of 6)	intron (NM_022023, intron 1 of 6)	732.0	NM_022023	63985.0	Mm.87312	NM_022023	ENSMUSG00000062014	Gmfb	3110001H22Rik|3110001O16Rik|AI851627|C79176|D14Ertd630e	glia maturation factor, beta	protein-coding	-1.8418762459921	-1.8125357239735	-1.82140854000656	-1.82869693527674	-1.56059678980999	-1.8106129477253	-1.81939992894326	-1.82739231600805	1.3620893379502	0.699511506488145	1
Merged-chr17-47515711-4	chr17	47515600	47515800	+	824.224976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081635, intron 1 of 6)	intron (NM_001081635, intron 1 of 6)	10649.0	NM_001081635	12445.0	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153092864-4	chr2	153092762	153092962	+	921.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15606.0	NM_001172117	15162.0	Mm.715	NM_010407	ENSMUSG00000003283	Hck	AI849071|Bmk	hemopoietic cell kinase	protein-coding	-1.56355737717652	-1.81244775989375	-1.82128546162293	-1.82854501295842	-1.83962066705452	-1.81053259306168	-1.81928479966835	-1.82724555674025	-1.28500227969968	0.715751224811686	1
Merged-chr1-79848872-4	chr1	79848765	79848965	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009255, intron 1 of 8)	intron (NM_009255, intron 1 of 8)	9800.0	NM_009255	20720.0	Mm.3093	NM_009255	ENSMUSG00000026249	Serpine2	B230326M24Rik|PAI-1|PI-7|PI7|PN-1|Spi4	serine (or cysteine) peptidase inhibitor, clade E, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-128735176-2	chr4	128735076	128735276	+	633.266663	f1_balb.idr|f1_c57bl6.idr	intron (NM_001195083, intron 1 of 6)	intron (NM_001195083, intron 1 of 6)	7605.0	NM_001195083	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	0.864761226836463	0.612442628438937	0.603296862402949	1.25145528018271	0.872189063296842	1.25886883857241	0.793577993784958	1.15925716456527	0.819278521984157	0.586370897993187	1
Merged-chr9-120129182-2	chr9	120129082	120129282	+	815.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_011029, exon 3 of 7)	exon (NM_011029, exon 3 of 7)	-1252.0	NR_002902	104433.0	Mm.453530	NR_002902	ENSMUSG00000064925	Snora62	E2|MBI-13|MBI-136|Rnu108	small nucleolar RNA, H/ACA box 62	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-37890504-4	chr1	37890422	37890622	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026913)	promoter-TSS (NM_026913)	45.0	NM_027098	107734.0	Mm.26614	NM_027098	ENSMUSG00000026087	Mrpl30	2310001L22Rik|L30mt|MRP-L28|MRP-L30|Rpml28	mitochondrial ribosomal protein L30	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-19194085-2	chr5	19193985	19194185	+	594.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32470.0	NR_102341	70832.0	Mm.398993	NR_102341	ENSMUSG00000097626	4921504A21Rik	-	RIKEN cDNA 4921504A21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5215442-1	chr17	5215342	5215542	+	542.0	f1_balb.idr	intron (NM_001085355, intron 4 of 19)	MLT1E1A|LTR|ERVL-MaLR	203325.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34030309-2	chr17	34030233	34030433	+	913.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077709, intron 4 of 7)	intron (NM_001077709, intron 4 of 7)	1357.0	NM_001077709	14977.0	Mm.18556	NM_008202	ENSMUSG00000024327	Slc39a7	AA408174|AI117660|AL024048|H-2Ke4|H2-Ke4|Ke-4|Ke4|Ring5|Zip7	solute carrier family 39 (zinc transporter), member 7	protein-coding	0.47939665864267	-0.0459833108632248	-0.0508111341453343	0.103556001974806	0.569580366940197	-0.0448934356083909	-0.049747317925332	0.106366480149948	0.251032482979637	0.907804244240757	1
Merged-chr7-118904032-2	chr7	118903932	118904132	+	824.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081446, intron 6 of 8)	intron (NM_001081446, intron 6 of 8)	-48034.0	NM_023197	66356.0	Mm.482278	NM_023197	ENSMUSG00000030980	Knop1	2310008H09Rik|Tsg118	lysine rich nucleolar protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-40557000-2	chr12	40556900	40557100	+	763.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	L1_Mus3|LINE|L1	110947.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-20182408-4	chr13	20182311	20182511	+	791.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	91904.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	-0.322783518212368	-0.306677819896326	0.591167103173502	-0.315992927263032	0.198710379535129	-0.305498724919425	-0.310765561291017	-0.315281103194838	-1.12561289552753	0.662166885420622	1
Merged-chr1-80720292-1	chr1	80720192	80720392	+	561.0	f0_c57.idr	intron (NM_175291, intron 1 of 55)	Charlie22a|DNA|hAT-Charlie	38261.0	NM_175291	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5206972-4	chr17	5206866	5207066	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 4 of 19)	intron (NM_001085355, intron 4 of 19)	211801.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91355400-4	chr16	91355329	91355529	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17354.0	NM_010509	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-45042868-2	chr2	45042768	45042968	+	843.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355291, intron 2 of 9)	intron (NM_001355291, intron 2 of 9)	-19691.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3713206-3	chr4	3713093	3713293	+	747.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 1 of 12)	intron (NM_001111096, intron 1 of 12)	-1771.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-54929483-2	chr8	54929383	54929583	+	547.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253754, intron 1 of 6)	RMER17A2|LTR|ERVK	-25245.0	NM_153581	234267.0	Mm.241700	NM_153581	ENSMUSG00000031517	Gpm6a	Gpm6|M6A	glycoprotein m6a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-98321264-4	chr7	98321180	98321380	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360615)	promoter-TSS (NM_001360615)	-72.0	NM_001360615	66190.0	Mm.334041	NM_025408	ENSMUSG00000030760	Acer3	1110057L18Rik|5430429L08Rik|AV015045|Phca|aPHC	alkaline ceramidase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-35317682-1	chr3	35317582	35317782	+	540.0	f1_c57bl6.idr	Intergenic	Intergenic	348481.0	NR_040748	625963.0	Mm.251506	NR_040748	ENSMUSG00000105662	Gm6639	-	predicted gene 6639	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-12301358-4	chr12	12301248	12301448	+	962.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029758, intron 2 of 12)	Lx8|LINE|L1	39209.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-60631714-1	chr8	60631614	60631814	+	770.5	f0_balb.idr	Intergenic	Intergenic	-1111.0	NM_027756	71306.0	Mm.23242	NM_027756	ENSMUSG00000031647	Mfap3l	4933428A15Rik|5430405D20Rik|AI461995|AW125052|NYD-sp9|mKIAA0626	microfibrillar-associated protein 3-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-54533001-2	chr11	54532901	54533101	+	750.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252494, intron 1 of 28)	MTEb|LTR|ERVL-MaLR	10156.0	NM_001252496	192786.0	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-41738996-4	chr5	41738912	41739112	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25208.0	NM_007524	12020.0	Mm.2530	NM_007524	ENSMUSG00000049691	Nkx3-2	Bapx1|NKX3.2|Nkx-3.2	NK3 homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-55477588-2	chr13	55477488	55477688	+	727.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_105909)	TTS (NR_105909)	188.0	NR_105909	102465569.0		NR_105909	ENSMUSG00000098341	Mir6944	Gm27710|mmu-mir-6944	microRNA 6944	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-156066772-2	chr1	156066656	156066856	+	922.900024	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001358627, exon 6 of 6)	3' UTR (NM_001358627, exon 6 of 6)	25895.0	NM_022329	240832.0	Mm.253335	NM_022329	ENSMUSG00000050565	Tor1aip2	1110020D10Rik|15kDa|A130072J07|AA103493|AW060462|AW610675|C77739|Ifrg15|Lull1	torsin A interacting protein 2	protein-coding	3.75044053120132	4.44011159819492	4.34979619172405	4.10029508804365	2.95938690528773	3.09617473569871	3.112090839207	2.59161893024609	-1.84362013967159	0.000439026033287248	0.0100643298603519
Merged-chr7-29214557-3	chr7	29214464	29214664	+	706.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164658)	promoter-TSS (NM_001164658)	-531.0	NM_001164658	320225.0	Mm.349382	NM_001039721	ENSMUSG00000049676	Catsperg1	A230107C01Rik|Catsperg	cation channel sperm associated auxiliary subunit gamma 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76692076-1	chr15	76691976	76692176	+	607.0	f1_c57bl6.idr	intron (NR_152559, intron 4 of 8)	intron (NR_152559, intron 4 of 8)	-4650.0	NM_182805	76282.0	Mm.30130	NM_182805	ENSMUSG00000022546	Gpt	1300007J06Rik|2310022B03Rik|ALT|ALT1|Gpt-1|Gpt1	glutamic pyruvic transaminase, soluble	protein-coding	-2.18138529563533	-2.15523716995652	-2.1631445789866	-2.16963996020037	-2.05513010215571	-2.15352360143315	-2.16135451490766	-2.16847729006863	0.759018020146679	0.829933115115583	1
Merged-chr5-142222355-3	chr5	142222245	142222445	+	845.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-179152.0	NM_199068	17425.0	Mm.24214	NM_010812	ENSMUSG00000056493	Foxk1	A630048H08Rik|AI463295|Gm10868|Mnf	forkhead box K1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47508155-4	chr17	47508066	47508266	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081635, intron 1 of 6)	intron (NM_001081635, intron 1 of 6)	3115.0	NM_001081635	12445.0	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-11820419-4	chr11	11820336	11820536	+	939.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016672, intron 12 of 14)	intron (NM_016672, intron 12 of 14)	-11474.0	NM_001163360	60530.0	Mm.236114	NM_021891	ENSMUSG00000035455	Fignl1	-	fidgetin-like 1	protein-coding	0.919791467217147	0.302744553955407	0.297733733168931	0.85659408610877	0.800052411546812	0.303880688433218	0.298834773181242	0.29456823384852	-1.2940012544668	0.53252251747955	1
Merged-chr2-113819607-3	chr2	113819505	113819705	+	871.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009162, intron 2 of 5)	intron (NM_009162, intron 2 of 5)	9486.0	NM_009162	20394.0	Mm.4836	NM_009162	ENSMUSG00000023236	Scg5	7B2|AI325031|Sgne-1|Sgne1	secretogranin V	protein-coding	1.80835284158579	1.13673120626187	2.07821501749128	1.90920129812543	1.92529902328776	1.60087490368546	1.1189858441773	2.44521027362675	0.262287005725789	0.817306929100815	0.998431161219273
Merged-chr5-3152205-4	chr5	3152105	3152305	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-191688.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89353533-2	chr3	89353433	89353633	+	569.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_029974, exon 12 of 16)	exon (NM_029974, exon 12 of 16)	-3505.0	NM_009614	11490.0	Mm.274049	NM_009614	ENSMUSG00000028041	Adam15	AD56|MDC15	a disintegrin and metallopeptidase domain 15 (metargidin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-99187770-1	chr11	99187670	99187870	+	620.0	f1_c57bl6.idr	Intergenic	Intergenic	-32693.0	NM_007719	12775.0	Mm.2932	NM_007719	ENSMUSG00000037944	Ccr7	CC-CKR-7|CCR-7|CD197|Cdw197|Cmkbr7|EBI1|Ebi1h	chemokine (C-C motif) receptor 7	protein-coding	3.17226153423137	1.05196416581835	3.35032709841684	0.974538434609664	1.93177996698295	1.0611866740315	2.79376474854086	0.980770537778857	-1.2649574605979	0.613342605116393	0.977016008521838
Merged-chr10-56795452-4	chr10	56795351	56795551	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	363470.0	NR_152768	102640560.0	Mm.417249	NR_152768		Gm36595	-	predicted gene, 36595	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-64308194-4	chr13	64308108	64308308	+	944.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025370, intron 4 of 5)	MTD|LTR|ERVL-MaLR	4502.0	NM_025370	66129.0	Mm.491110	NM_025370	ENSMUSG00000021482	Aaed1	1110018J18Rik|AI849003	AhpC/TSA antioxidant enzyme domain containing 1	protein-coding	4.67884159442452	2.85662201625461	4.17930784874277	4.94946016796579	6.26080585274594	5.2711619085849	6.30397105393436	5.23704581940064	1.73367915299682	3.49802931389729e-05	0.00131154236587936
Merged-chr19-60580243-4	chr19	60580164	60580364	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001172097, intron 1 of 6)	intron (NM_001172097, intron 1 of 6)	759.0	NM_001172097	78832.0	Mm.259026	NM_030197	ENSMUSG00000033417	Cacul1	2700078E11Rik|2810417M16Rik|9830127L17Rik|AI450346|D130033C15Rik	CDK2 associated, cullin domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-43363048-2	chr15	43362969	43363169	+	599.5	f0_balb.idr|f1_balb.idr	Intergenic	L1Md_F2|LINE|L1	-80333.0	NM_008388	16341.0	Mm.289992	NM_008388	ENSMUSG00000022336	Eif3e	48kDa|Eif3s6|Int6|eIF3-p46|eIF3-p48	eukaryotic translation initiation factor 3, subunit E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-82047427-6	chr15	82047304	82047504	+	955.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011482, intron 1 of 2)	CpG	194.0	NM_011482	20826.0	Mm.299312	NM_011482	ENSMUSG00000063480	Snu13	FA-1|Fta1|Nhp2l1|Ssfa1	SNU13 homolog, small nuclear ribonucleoprotein (U4/U6.U5)	protein-coding	4.27071841145038	4.54764992670102	5.30612125973008	4.86225785002414	4.20645319366715	4.18299209342405	4.9452487245002	5.08482318960501	-0.16116817882505	0.685140356839537	0.996533206832645
Merged-chr19-53264011-4	chr19	53263913	53264113	+	962.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8808.0	NR_036590	69319.0	Mm.57452	NR_036590		1700001K23Rik	-	RIKEN cDNA 1700001K23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120463635-2	chr11	120463535	120463735	+	850.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_197995)	TTS (NM_197995)	3965.0	NM_197995	70317.0	Mm.485046	NM_197995	ENSMUSG00000057594	Arl16	2600005N12Rik	ADP-ribosylation factor-like 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-34851831-2	chr18	34851731	34851931	+	752.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9376.0	NM_007913	13653.0	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-29451810-2	chr17	29451710	29451910	+	736.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39235.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-81976148-3	chr6	81976055	81976255	+	702.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10206.0	NM_026490	56284.0	Mm.276293	NM_026490	ENSMUSG00000030045	Mrpl19	9030416F12Rik|9130412E02Rik|D6Ertd157e|MRP-L15|RLX1|Rpml15	mitochondrial ribosomal protein L19	protein-coding	-2.05752322593321	-2.15521190974092	-2.16307242109104	-2.16952927915413	-2.17938029103484	-2.15350850414045	-2.16129297361887	-2.16837350464794	-0.683654500252594	0.846597994014493	1
Merged-chr14-61689560-4	chr14	61689454	61689654	+	937.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-7181.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28344073-2	chr7	28343973	28344173	+	605.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MURVY-LTR|LTR|ERV1	-5354.0	NM_013676	20924.0	Mm.285906	NM_013676	ENSMUSG00000003435	Supt5	AL033283|AL033321|AU019549|Spt5|Supt5h	suppressor of Ty 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-40307434-4	chr8	40307339	40307539	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030110)	promoter-TSS (NM_030110)	490.0	NR_106126	102466237.0		NR_106126	ENSMUSG00000098431	Mir7666	Gm27915|mmu-mir-7666	microRNA 7666	ncRNA	2.78830846145906	3.61104095743922	1.55061459727605	3.67778947362681	2.71843598609806	2.68635399855063	2.84533010128812	2.75489165182048	-0.698630196336095	0.361462640805842	0.857264361680583
Merged-chr10-96610139-2	chr10	96610039	96610239	+	922.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6862.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-120714232-2	chr5	120714132	120714332	+	602.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2563.0	NM_008052	14357.0	Mm.1645	NM_008052	ENSMUSG00000029603	Dtx1	Fxit1|mKIAA4160	deltex 1, E3 ubiquitin ligase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-111004331-4	chr10	111004228	111004428	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359624, intron 1 of 16)	MTE2a|LTR|ERVL-MaLR	5681.0	NM_001359622	320150.0	Mm.339281	NM_172554	ENSMUSG00000035798	Zdhhc17	A230053P19Rik|BB187739|D130071N24Rik|DHHC-17|Hip14	zinc finger, DHHC domain containing 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-93995901-5	chr11	93995860	93996060	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199203)	promoter-TSS (NM_001199203)	-131.0	NM_001199203	70834.0	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	3.43542418346989	4.91069510043453	5.14025217467837	5.38473676566476	3.55476369619509	4.94353152443822	5.17509936079807	5.33081467017387	0.0124263376974928	0.978928499444992	0.998431161219273
Merged-chr8-121906645-4	chr8	121906528	121906728	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011404, intron 1 of 9)	intron (NM_011404, intron 1 of 9)	1058.0	NM_011404	20539.0	Mm.22374	NM_011404	ENSMUSG00000040010	Slc7a5	4F2LC|D0H16S474E|LAT1|TA1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 5	protein-coding	6.10026758566989	5.47134820431303	6.53927337359039	4.96181104942721	6.16655503132699	5.25030052497814	5.888265421965	5.26442668918812	-0.21267135038285	0.53411130933593	0.952571720753021
Merged-chr15-51867558-2	chr15	51867458	51867658	+	682.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	-2097.0	NM_080635	68135.0	Mm.289800	NM_080635	ENSMUSG00000022312	Eif3h	1110008A16Rik|40kD|9430017H16Rik|EIF3-P40|EIF3-gamma|Eif3s3	eukaryotic translation initiation factor 3, subunit H	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-123717672-4	chr9	123717602	123717802	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033322)	promoter-TSS (NM_033322)	-77.0	NR_151689	93730.0	Mm.378263	NM_033322	ENSMUSG00000025245	Lztfl1	5530402H04Rik|6130400H19Rik|AI414725|AW048545	leucine zipper transcription factor-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-7204133-3	chr10	7203897	7204097	+	671.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172546, intron 1 of 12)	intron (NM_172546, intron 1 of 12)	8240.0	NM_172546	215748.0	Mm.37984	NM_172546	ENSMUSG00000015202	Cnksr3	6820402C05|BC024086|Magi1	Cnksr family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-113684546-4	chr11	113684436	113684636	+	996.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138598)	promoter-TSS (NM_138598)	102.0	NM_001361593	276852.0	Mm.239566	NM_177777	ENSMUSG00000041623	D11Wsu47e	-	DNA segment, Chr 11, Wayne State University 47, expressed	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-115384888-4	chr10	115384793	115384993	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033261)	promoter-TSS (NM_001033261)	-66.0	NM_001033261	216345.0	Mm.207621	NM_001033261	ENSMUSG00000034163	Zfc3h1	BC033596|Ccdc131|Psrc2	zinc finger, C3H1-type containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-34235560-4	chr10	34235471	34235671	+	974.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28020.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-39190832-4	chr2	39190719	39190919	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178778)	promoter-TSS (NM_178778)	-89.0	NM_178778	320271.0	Mm.204836	NM_178778	ENSMUSG00000035236	Scai	9330112M16|A930041I02Rik|AI662729	suppressor of cancer cell invasion	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-25762050-2	chr5	25761950	25762150	+	614.599976	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310504, intron 1 of 10)	intron (NM_001310504, intron 1 of 10)	2077.0	NM_001004365	242894.0	Mm.150319	NM_001004365	ENSMUSG00000056367	Actr3b	9630005C02|ARP11|AW047569|Arp3b|Arp3beta	ARP3 actin-related protein 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-64042728-2	chr15	64042628	64042828	+	799.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360037, intron 1 of 11)	B1_Mur4|SINE|Alu	17036.0	NM_001360038	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-51052418-2	chr9	51052318	51052518	+	721.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24676.0	NM_001033534	244864.0	Mm.335152	NM_001033534	ENSMUSG00000060594	Layn	E030012M19Rik|Gm511	layilin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46894467-4	chr8	46894323	46894523	+	885.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-92464.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-29844730-3	chr5	29844620	29844820	+	657.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-108784.0	NR_028426	332993.0	Mm.473746	NR_028426		Gm5129	EG332993	predicted gene 5129	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-43985821-4	chr7	43985744	43985944	+	986.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9783.0	NM_010116	13648.0	Mm.440884	NM_010116	ENSMUSG00000059042	Klk1b9	EGF-BP C|Egfbp-3|Egfbp3|KAL|Klk9|kallikrein|mGk-9	kallikrein 1-related peptidase b9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-25241822-4	chr18	25241711	25241911	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033532, intron 5 of 10)	intron (NM_001033532, intron 5 of 10)	72791.0	NM_001033532	225289.0	Mm.391081	NM_001033532	ENSMUSG00000033632	AW554918	4921538P22|AI461742|Kiaa1328|mKIAA1328	expressed sequence AW554918	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-98180247-2	chr2	98180147	98180347	+	832.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	712590.0	NM_178725	241568.0	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-81933017-2	chr3	81932941	81933141	+	977.833374	f0_balb.idr|f0_c57.idr	intron (NM_177662, intron 1 of 7)	intron (NM_177662, intron 1 of 7)	440.0	NM_177662	229445.0	Mm.254642	NM_177662	ENSMUSG00000028015	Ctso	A330105D01Rik|AI118514	cathepsin O	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-16006442-4	chr3	16006352	16006552	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081687)	promoter-TSS (NM_001081687)	-120.0	NM_001081687	381484.0	Mm.217376	NM_001081687	ENSMUSG00000078780	Gm5150	-	predicted gene 5150	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-43808185-4	chr5	43808075	43808275	+	989.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-10718.0	NM_009763	12182.0	Mm.246332	NM_009763	ENSMUSG00000029082	Bst1	114/A10|A530073F09|BP-3|Bp3|Bsta1|CD157|Ly65	bone marrow stromal cell antigen 1	protein-coding	4.47768937707457	5.05605928232039	5.58548958701517	5.45784685256449	3.36184039408293	4.73197900381086	4.17213735225105	4.17216433672267	-1.26254085414592	0.00212906893300485	0.0349372646729187
Merged-chr2-168158566-2	chr2	168158466	168158666	+	678.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4053.0	NR_040327	77017.0	Mm.407822	NR_040327	ENSMUSG00000087648	E130018N17Rik	-	RIKEN cDNA E130018N17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-59602060-1	chr16	59601960	59602160	+	670.0	f1_c57bl6.idr	Intergenic	Intergenic	-34885.0	NR_040564	75145.0	Mm.399348	NR_040564		4930547E14Rik	-	RIKEN cDNA 4930547E14 gene	ncRNA	-1.50561175621786	-1.47331375025452	-1.02203377115094	-1.49110398925286	-1.50334449591826	-1.47119716082604	-1.48086985756939	-1.48966786617048	-2.07776723614574	0.550394407909386	1
Merged-chr7-141539886-4	chr7	141539778	141539978	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001142681)	promoter-TSS (NM_001142681)	-21.0	NM_001142681	68038.0	Mm.245355	NM_026522	ENSMUSG00000025512	Chid1	3110023E09Rik|AI841869	chitinase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-24036919-1	chr5	24036819	24037019	+	585.0	f0_balb.idr	Intergenic	MER21C|LTR|ERVL	-6229.0	NM_053090	84652.0	Mm.304976	NM_053090	ENSMUSG00000028995	Fam126a	AB030242|Drctnnb1a	family with sequence similarity 126, member A	protein-coding	0.125023175934577	-0.22671326565366	-0.592996873821051	-0.59590812811371	-0.600022517563233	-0.58837348946275	-0.59216467810093	-0.595399521434064	-3.41748607292239	0.217084204438087	1
Merged-chr17-56836847-2	chr17	56836747	56836947	+	691.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5839.0	NM_027787	19725.0	Mm.102	NM_009056	ENSMUSG00000024206	Rfx2	5430432H19Rik	regulatory factor X, 2 (influences HLA class II expression)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128031583-2	chr10	128031483	128031683	+	777.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2B|LTR|ERVL	-3763.0	NM_013608	17938.0	Mm.3746	NM_013608	ENSMUSG00000061315	Naca	AL022831|AL024382|Gm1878|mKIAA0363|skNAC	nascent polypeptide-associated complex alpha polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-14131780-2	chr10	14131680	14131880	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_010437, exon 4 of 9)	exon (NM_010437, exon 4 of 9)	165401.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-108833653-4	chr4	108833539	108833739	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027453)	promoter-TSS (NM_027453)	1.0	NM_027453	70533.0	Mm.379178	NM_027453	ENSMUSG00000028568	Btf3l4	4632412E09Rik|5730434I03Rik|AI316863|AU022207|AW552446	basic transcription factor 3-like 4	protein-coding	5.04282176209502	5.27905458093914	4.82410527096841	4.6132471458592	4.87381182434218	5.05005096763675	5.01799408420364	4.15278567915634	-0.176123449260803	0.616980947612001	0.977517868708383
Merged-chr17-84334464-4	chr17	84334357	84334557	+	979.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183021, intron 27 of 37)	intron (NM_183021, intron 27 of 37)	131751.0	NM_183021	240174.0	Mm.246767	NM_177826	ENSMUSG00000024251	Thada	6530405K19|A930021O22|AU019899|BC052885|GITA	thyroid adenoma associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97698871-4	chr11	97698784	97698984	+	726.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163307, intron 1 of 10)	intron (NM_001163307, intron 1 of 10)	500.0	NM_001163307	22658.0	Mm.2418	NM_009545	ENSMUSG00000018537	Pcgf2	Mel18|Rnf110|Zfp144|mel-18	polycomb group ring finger 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-23184888-4	chr1	23184731	23184931	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-82578.0	NM_025746	66755.0	Mm.431297	NM_025746	ENSMUSG00000073730	4933415F23Rik	-	RIKEN cDNA 4933415F23 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-60638427-4	chr18	60638328	60638528	+	983.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14123.0	NM_177340	104027.0	Mm.252321	NM_177340	ENSMUSG00000043079	Synpo	9030217H17Rik|9130229N11|9330140I15Rik|AW046661	synaptopodin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105291094-4	chr8	105291001	105291201	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357379, intron 8 of 12)	intron (NM_001357379, intron 8 of 12)	-1573.0	NM_028888	74356.0	Mm.204876	NM_028888	ENSMUSG00000014837	4931428F04Rik	AI426165|Kiaa0895l	RIKEN cDNA 4931428F04 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80827876-2	chr10	80827776	80827976	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_035503)	promoter-TSS (NR_035503)	-921.0	NR_035503	100316778.0		NR_035503	ENSMUSG00000087993	Mir1982	mir-1982|mmu-mir-1982	microRNA 1982	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91829786-2	chr16	91829686	91829886	+	586.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001110276, exon 16 of 16)	3' UTR (NM_001110276, exon 16 of 16)	100415.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-24961751-4	chr19	24961643	24961843	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033744)	promoter-TSS (NR_033744)	-127.0	NM_146097	226043.0	Mm.272127	NM_146097	ENSMUSG00000024878	Cbwd1	AV349248|BC018472	COBW domain containing 1	protein-coding	8.24449116751276	7.91992482058649	7.99591773585367	7.93031170818024	8.0608949821248	8.20693322061591	8.18324299965061	8.26505758599922	0.151093508838907	0.234697873344412	0.731086761108682
Merged-chr16-24361934-4	chr16	24361847	24362047	+	887.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31403.0	NM_178665	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-47025638-4	chr7	47025548	47025748	+	938.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17234.0	NM_175318	101685.0	Mm.155687	NM_175318	ENSMUSG00000049516	Spty2d1	5830435K17Rik|AI852426|P16H6	SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45014570-2	chr7	45014470	45014670	+	554.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001008422, intron 1 of 10)	intron (NM_001008422, intron 1 of 10)	1679.0	NM_001008422	233208.0	Mm.28298	NM_001008422	ENSMUSG00000038406	Scaf1	AI480556|SR-A1	SR-related CTD-associated factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-34907978-4	chr6	34907872	34908072	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013366, intron 3 of 14)	intron (NM_001013366, intron 3 of 14)	2859.0	NM_001013366	101240.0	Mm.152120	NM_001013366	ENSMUSG00000058486	Wdr91	9530020G05Rik|AI987683|AU018665	WD repeat domain 91	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96300843-4	chr3	96300707	96300907	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6838.0	NM_010186	14129.0	Mm.150	NM_010186	ENSMUSG00000015947	Fcgr1	AI323638|AV092959|CD64|FcgammaRI|IGGHAFC	Fc receptor, IgG, high affinity I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-98880443-2	chr7	98880343	98880543	+	638.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41598.0	NM_001285795	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-110889812-4	chr12	110889700	110889900	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027223)	promoter-TSS (NM_027223)	536.0	NM_001081057	104859.0	Mm.35583	NM_175336	ENSMUSG00000021275	Tecpr2	4930573I19Rik|AI604920|mKIAA0297	tectonin beta-propeller repeat containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-82991167-2	chr11	82991067	82991267	+	806.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172796, intron 1 of 4)	intron (NM_172796, intron 1 of 4)	663.0	NM_172796	237886.0	Mm.270253	NM_172796	ENSMUSG00000069793	Slfn9	9830137M10Rik	schlafen 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-56641220-2	chr13	56641120	56641320	+	782.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31634.0	NR_155548	21810.0	Mm.14455	NM_009369	ENSMUSG00000035493	Tgfbi	68kDa|AI181842|AI747162|Beta-ig|big-h3	transforming growth factor, beta induced	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-58803727-2	chr1	58803627	58803827	+	656.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080126, intron 1 of 8)	intron (NM_001080126, intron 1 of 8)	1225.0	NM_001277926	12370.0	Mm.336851	NM_009812	ENSMUSG00000026029	Casp8	CASP-8|FLICE|MACH|Mch5	caspase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180639849-2	chr1	180639749	180639949	+	569.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1301.0	NM_001103182	72568.0	Mm.275044	NM_175186	ENSMUSG00000058729	Lin9	2700022J23Rik|Bara|Lin-9|TGS|TGS1|mLin-9	lin-9 homolog (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-10920417-3	chr15	10920320	10920520	+	903.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31912.0	NM_030888	81799.0	Mm.280158	NM_030888	ENSMUSG00000058914	C1qtnf3	2310005P21Rik|CORS-26|CORS26|CTRP3|Corcs|Cors	C1q and tumor necrosis factor related protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-17111128-4	chr16	17111033	17111233	+	985.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252445, intron 1 of 19)	CpG	119.0	NM_001252445	66053.0	Mm.253614	NM_144954	ENSMUSG00000022771	Ppil2	0610009L05Rik|1700016N17Rik|4921520K19Rik|4930511F14Rik|AA589416|C130078A06Rik|CYC4	peptidylprolyl isomerase (cyclophilin)-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36744673-2	chr1	36744573	36744773	+	723.1999509999999	f1_balb.idr|f1_c57bl6.idr	intron (NR_040290, intron 7 of 8)	intron (NR_040290, intron 7 of 8)	-17125.0	NM_009539	22637.0	Mm.8038	NM_009539	ENSMUSG00000026117	Zap70	Srk|ZAP-70|mrtle|mur	zeta-chain (TCR) associated protein kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-14646143-2	chr8	14646043	14646243	+	703.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_172910, intron 4 of 15)	intron (NM_172910, intron 4 of 15)	-242393.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3967734-4	chr4	3967637	3967837	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28313.0	NR_104356	66433.0	Mm.27406	NM_181391	ENSMUSG00000042198	Chchd7	1810049H20Rik	coiled-coil-helix-coiled-coil-helix domain containing 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-20742549-3	chr18	20742449	20742649	+	859.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019737, intron 1 of 8)	intron (NM_019737, intron 1 of 8)	3855.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-53275147-2	chr19	53275098	53275298	+	813.1190190000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-19993.0	NR_036590	69319.0	Mm.57452	NR_036590		1700001K23Rik	-	RIKEN cDNA 1700001K23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-66877188-3	chr9	66877069	66877269	+	797.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	-42463.0	NM_026674	68318.0	Mm.284229	NM_026674	ENSMUSG00000053040	Aph1c	0610008A10Rik|APH-1b|Aph1b	aph1 homolog C, gamma secretase subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-65472680-4	chr16	65472572	65472772	+	884.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47957.0	NM_008849	18736.0	Mm.355440	NM_008849	ENSMUSG00000004842	Pou1f1	GHF-1|Hmp1|Pit-1|Pit1|Pit1-rs1|dw|dwarf	POU domain, class 1, transcription factor 1	protein-coding	0.298563772993157	0.869326819126344	0.316902496972295	0.310058391733066	0.300284595572483	1.01228694749752	0.521491026676638	1.19752051937254	1.91307024455008	0.307383611835101	1
Merged-chr5-62853435-4	chr5	62853350	62853550	+	816.633301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170705, intron 7 of 8)	intron (NM_001170705, intron 7 of 8)	39627.0	NM_001170705	100322896.0	Mm.479821	NM_001170705	ENSMUSG00000090326	Dthd1	Gm17384	death domain containing 1	protein-coding	1.82704547292769	1.61713566912828	2.1861279455068	1.52993556548092	2.11137169293276	1.79484944709807	1.16695191762898	2.0391411667003	0.0535448964107029	0.959777447198091	0.998431161219273
Merged-chr11-70764448-4	chr11	70764319	70764519	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177565)	promoter-TSS (NM_177565)	-28.0	NM_177565	193043.0	Mm.40966	NM_177565	ENSMUSG00000043602	Zfp3	AI854635|B230309J24|Fnp-1|Zfp-3	zinc finger protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-27268286-1	chr3	27268186	27268386	+	540.0	f1_balb.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-48791.0	NM_009425	22035.0	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-31596689-4	chr2	31596575	31596775	+	844.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290548, intron 6 of 18)	intron (NM_001290548, intron 6 of 18)	-15746.0	NR_105964	102466214.0		NR_105964	ENSMUSG00000098904	Mir6998	Gm28024|mmu-mir-6998	microRNA 6998	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-54206201-2	chr5	54206101	54206301	+	707.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-143791.0	NR_038045	330086.0	Mm.254449	NM_177871	ENSMUSG00000105912	Gm10440	D130065D13	predicted gene 10440	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-87636019-4	chr16	87635929	87636129	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62925.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	4.3357772061109	4.76620791096339	3.94524074768854	4.15687846418879	4.36886618214723	4.79737240928319	3.97595385910635	4.17735773729463	0.0379489488893402	0.92729587989682	0.998431161219273
Merged-chr5-3309417-3	chr5	3309330	3309530	+	868.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34463.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-37954490-4	chr13	37954396	37954596	+	878.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39712.0	NM_025965	107513.0	Mm.426670	NM_025965	ENSMUSG00000021427	Ssr1	2510001K09Rik|6330400D04|AI159733|AI452176|SSR|TRAPA	signal sequence receptor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71460849-1	chr8	71460749	71460949	+	1000.0	f1_balb.idr	intron (NM_022419, intron 2 of 4)	intron (NM_022419, intron 2 of 4)	2808.0	NM_022419	64296.0	Mm.276383	NM_022419	ENSMUSG00000007950	Abhd8	0910001L24Rik|AB030191	abhydrolase domain containing 8	protein-coding	-0.593695801544194	-0.582302606969671	-0.586036692214608	-0.421611769086881	-0.592985035975961	-0.581460707176106	-0.401226463477484	0.145414851157576	2.5323103435596	0.334613837422767	1
Merged-chr4-133613775-4	chr4	133613672	133613872	+	950.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001017968, intron 4 of 7)	intron (NM_001017968, intron 4 of 7)	-11604.0	NM_018754	55948.0	Mm.44482	NM_018754	ENSMUSG00000047281	Sfn	Er|Mme1|Ywhas	stratifin	protein-coding	1.22549451770864	1.53250645043816	1.47788916252704	1.28766990242871	1.23494013838097	0.943278670361441	1.4900864942421	2.25355964969225	0.719262497305732	0.549816974416313	0.958882219733107
Merged-chr11-69616363-2	chr11	69616263	69616463	+	612.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_011367, exon 5 of 8)	exon (NM_011367, exon 5 of 8)	1542.0	NM_011367	20415.0	Mm.1431	NM_011367	ENSMUSG00000005202	Shbg	ABP	sex hormone binding globulin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-55976419-3	chr17	55976309	55976509	+	874.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001159523, exon 7 of 7)	3' UTR (NM_001159523, exon 7 of 7)	5927.0	NM_009168	20420.0	Mm.20908	NM_009168	ENSMUSG00000039154	Shd	AI413439	src homology 2 domain-containing transforming protein D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-21502418-2	chr14	21502318	21502518	+	608.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_017479, intron 1 of 16)	intron (NM_017479, intron 1 of 16)	2633.0	NM_017479	54169.0	Mm.248967	NM_017479	ENSMUSG00000021767	Kat6b	AI507552|B130044K16Rik|MYST-4|Morf|Myst4|mKIAA0383|qkf|querkopf	K(lysine) acetyltransferase 6B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-93757576-4	chr6	93757459	93757659	+	936.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029850, intron 9 of 23)	intron (NM_001029850, intron 9 of 23)	155404.0	NR_104594	14924.0	Mm.217216	NM_010367	ENSMUSG00000045095	Magi1	AIP3|BAP1|Baiap1|Gukmi1|MAGI1c|Magi-1|TNRC19|WWP3|mKIAA4129	membrane associated guanylate kinase, WW and PDZ domain containing 1	protein-coding	3.71601485412177	3.65538408913532	4.66312669695584	3.69234998869773	4.52340608536778	4.74881484244529	5.38337768680243	5.37229163445974	1.32296410219328	0.00157141188255119	0.0280562496530493
Merged-chr6-87483445-2	chr6	87483345	87483545	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037727, intron 4 of 10)	intron (NM_001037727, intron 4 of 10)	12882.0	NR_104483	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-21740971-2	chr14	21740871	21741071	+	851.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001007268, intron 5 of 7)	intron (NM_001007268, intron 5 of 7)	1908.0	NM_013849	27389.0	Mm.390674	NM_013849	ENSMUSG00000021768	Dusp13	DUSP13A|DUSP13B|Gm1203|LMW-DSP6|MDSP|TMDP|TS-DSP6	dual specificity phosphatase 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-22740782-2	chr2	22740682	22740882	+	809.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33545.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-185276089-2	chr1	185276025	185276225	+	892.833374	f0_balb.idr|f1_c57bl6.idr	intron (NM_001163754, intron 29 of 34)	intron (NM_001163754, intron 29 of 34)	33150.0	NR_035529	100316737.0		NR_035529	ENSMUSG00000105770	Mir664	mir-664|mmu-mir-664	microRNA 664	ncRNA	-0.623427061874197	-0.27522518904508	-0.616988526225621	-0.619416496125027	-0.165460744419477	-0.424993187913254	-0.616292785491638	-0.618992987117232	1.07579912142649	0.694386457738294	1
Merged-chr16-44833344-3	chr16	44833230	44833430	+	870.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_207244, exon 4 of 6)	exon (NM_207244, exon 4 of 6)	12602.0	NM_207244	239849.0	Mm.445045	NM_207244	ENSMUSG00000062082	Cd200r4	F630107N04Rik|MCD200RLa	CD200 receptor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-81933591-3	chr3	81933483	81933683	+	694.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177662, intron 1 of 7)	intron (NM_177662, intron 1 of 7)	982.0	NM_177662	229445.0	Mm.254642	NM_177662	ENSMUSG00000028015	Ctso	A330105D01Rik|AI118514	cathepsin O	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-87408370-4	chr3	87408261	87408461	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27421.0	NM_001113238	329693.0	Mm.331122	NM_183222	ENSMUSG00000048031	Fcrl5	Fcrh3|mBXMH2	Fc receptor-like 5	protein-coding	5.54948156369363	5.39993970215625	5.30664856659956	5.23807370773702	5.15359733472699	4.82312323728191	5.310790596041	4.48305987089352	-0.468074396374298	0.130617271579573	0.565892883153001
Merged-chr2-32874445-2	chr2	32874345	32874545	+	954.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-1689.0	NM_146119	227737.0	Mm.301646	NM_146119	ENSMUSG00000026796	Fam129b	9130404D14Rik	family with sequence similarity 129, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-30948423-4	chr16	30948292	30948492	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB2|LINE|L1	133040.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	4.73324706112528	4.72389284921394	3.04746688103176	2.03100879762624	4.28422801804168	4.79765132865092	4.27063100299402	3.68331691445678	0.328278890652535	0.593807429927051	0.9706660979479
Merged-chr18-73763096-2	chr18	73762996	73763196	+	619.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	-8617.0	NM_053255	114615.0	Mm.50642	NM_053255	ENSMUSG00000036941	Elac1	2610018O07Rik|8430417G19Rik	elaC ribonuclease Z 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-72531272-2	chr9	72531172	72531372	+	712.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033536)	promoter-TSS (NM_001033536)	586.0	NR_045735	75115.0	Mm.280755	NR_045735	ENSMUSG00000096986	4930509E16Rik	-	RIKEN cDNA 4930509E16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-22795569-4	chr2	22795476	22795676	+	978.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019456, intron 1 of 13)	RLTR13C1|LTR|ERVK	21249.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-80157389-2	chr11	80157289	80157489	+	599.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172133, intron 3 of 10)	intron (NM_172133, intron 3 of 10)	3227.0	NM_172133	216991.0	Mm.341520	NM_172133	ENSMUSG00000020709	Adap2	Centa2	ArfGAP with dual PH domains 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-122039774-4	chr10	122039699	122039899	+	991.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081037, intron 1 of 21)	L1M5|LINE|L1	7516.0	NM_001242411	117600.0	Mm.288698	NM_001081037	ENSMUSG00000020121	Srgap1	4930572H05Rik|Arhgap13	SLIT-ROBO Rho GTPase activating protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-94521223-2	chr16	94521123	94521323	+	752.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_007834, intron 1 of 7)	intron (NM_007834, intron 1 of 7)	5406.0	NM_007834	13185.0	Mm.7472	NM_007834	ENSMUSG00000022898	Dscr3	AW538125|Dcra	DSCR3 arrestin fold containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-24587516-2	chr2	24587416	24587616	+	582.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13B|LTR|ERVK	-111917.0	NM_011040	18510.0	Mm.2533	NM_011040	ENSMUSG00000026976	Pax8	Pax-8	paired box 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-113016218-4	chr5	113016116	113016316	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177078)	promoter-TSS (NM_177078)	-678.0	NM_177078	320129.0	Mm.285619	NM_177078	ENSMUSG00000042249	Grk3	4833444A01Rik|AI851927|AW551196|Adrbk-2|Adrbk2|Bark-2	G protein-coupled receptor kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-34170931-4	chr5	34170809	34171009	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1383.0	NM_001289803	272158.0	Mm.319286	NM_181857	ENSMUSG00000045102	Poln	POL4P	DNA polymerase N	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-177711561-4	chr1	177711472	177711672	+	937.224976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-18242.0	NM_027077	69428.0	Mm.84467	NM_027077	ENSMUSG00000015962	1700016C15Rik	-	RIKEN cDNA 1700016C15 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-41832406-5	chr15	41832320	41832520	+	999.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001130164, intron 1 of 5)	intron (NM_001130164, intron 1 of 5)	1462.0	NM_001130164	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43529309-2	chr4	43529209	43529409	+	588.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5755.0	NM_001277875	22004.0	Mm.646	NM_009416	ENSMUSG00000028464	Tpm2	Tpm-2|Trop-2	tropomyosin 2, beta	protein-coding	0.0297231124265439	-0.219268888239591	-0.223785950110151	0.192470136418186	-0.232180835567667	-0.218249872781454	0.449648344894099	-0.226659187709614	0.25875070232081	0.914341253092658	1
Merged-chr15-78963069-2	chr15	78962969	78963169	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039156, intron 7 of 24)	intron (NM_001039156, intron 7 of 24)	15345.0	NM_001039155	110253.0	Mm.123714	NM_138579	ENSMUSG00000033088	Triobp	AI428493|EST478828|Tara|mKIAA1662	TRIO and F-actin binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106255969-6	chr11	106255875	106256075	+	986.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008950)	promoter-TSS (NM_008950)	109.0	NM_025310	56095.0	Mm.29795	NM_025310	ENSMUSG00000020706	Ftsj3	AA537063|AU045295|C79843|D11Ertd400e|Epcs3	FtsJ RNA methyltransferase homolog 3 (E. coli)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-38455526-4	chr16	38455437	38455637	+	925.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2848.0	NM_007414	11544.0	Mm.20047	NM_007414	ENSMUSG00000002844	Adprh	Arh1	ADP-ribosylarginine hydrolase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-73623273-4	chr18	73623186	73623386	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	50581.0	NM_001039214	240396.0	Mm.24131	NM_001039214	ENSMUSG00000037253	Mex3c	A130001D14Rik|BC035207|BM-013|Rkhd2	mex3 RNA binding family member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-73422989-8	chr15	73422901	73423101	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358046, intron 1 of 34)	CpG	190.0	NM_007982	14083.0	Mm.254494	NM_007982	ENSMUSG00000022607	Ptk2	FADK 1|FAK|FRNK|Fadk|p125FAK	PTK2 protein tyrosine kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32960467-4	chr2	32960379	32960579	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199302, intron 1 of 24)	MIRb|SINE|MIR	776.0	NM_199302	227738.0	Mm.248037	NM_199302	ENSMUSG00000026792	Lrsam1	-	leucine rich repeat and sterile alpha motif containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-34297166-4	chr14	34297054	34297254	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153399, intron 2 of 11)	intron (NR_153399, intron 2 of 11)	13363.0	NR_153399	75698.0	Mm.45406	NM_029389	ENSMUSG00000041471	Fam35a	3110001K24Rik	family with sequence similarity 35, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134997083-4	chr6	134996964	134997164	+	833.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14548.0	NM_026360	67755.0	Mm.166524	NM_026360	ENSMUSG00000030204	Ddx47	4930588A18Rik|C77285	DEAD (Asp-Glu-Ala-Asp) box polypeptide 47	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133013756-2	chr4	133013656	133013856	+	660.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146155, intron 2 of 6)	intron (NM_146155, intron 2 of 6)	2250.0	NM_146155	230793.0	Mm.31816	NM_146155	ENSMUSG00000037692	Ahdc1	D030015G18Rik	AT hook, DNA binding motif, containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-4375847-2	chr9	4375747	4375947	+	740.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145609)	promoter-TSS (NM_145609)	-705.0	NM_145609	78100.0	Mm.206549	NM_145609	ENSMUSG00000041124	Msantd4	8430410K20Rik|Mysantd4	Myb/SANT-like DNA-binding domain containing 4 with coiled-coils	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-60636332-4	chr14	60636237	60636437	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033272, intron 1 of 12)	intron (NM_001033272, intron 1 of 12)	1632.0	NM_001033272	219140.0	Mm.149776	NM_001033272	ENSMUSG00000021990	Spata13	C79050|ESTM11|X83327|mFLJ00298	spermatogenesis associated 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35660409-1	chr17	35660309	35660509	+	582.0	f1_c57bl6.idr	exon (NM_175137, exon 17 of 29)	exon (NM_175137, exon 17 of 29)	7183.0	NM_175137	68915.0	Mm.32002	NM_175137	ENSMUSG00000038838	Vars2	1190004I24Rik|Vars2l|mKIAA1885	valyl-tRNA synthetase 2, mitochondrial	protein-coding	0.389485112164616	0.0305564158580749	0.025001227447655	0.818728077704912	0.287446788918845	0.229032153309585	0.0262267242379201	0.021462303980818	-1.6589252670504	0.429971293547033	1
Merged-chr2-27353371-2	chr2	27353271	27353471	+	606.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_133905, intron 1 of 29)	intron (NR_133905, intron 1 of 29)	74237.0	NR_133905	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-140162581-2	chr2	140162503	140162703	+	568.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081090, intron 3 of 13)	B1_Mus2|SINE|Alu	7955.0	NM_001081090	66580.0	Mm.21228	NM_001081090	ENSMUSG00000045624	Esf1	2610101J03Rik|ABTAP|AW545818|C79684	ESF1 nucleolar pre-rRNA processing protein homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-94098542-4	chr13	94098458	94098658	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172589, intron 1 of 3)	intron (NM_172589, intron 1 of 3)	40762.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-20445652-1	chr11	20445552	20445752	+	541.0	f1_c57bl6.idr	Intergenic	Intergenic	-97601.0	NM_021372	58172.0	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	-1.20406370813143	-1.56956373024278	-1.57884638916872	-1.58647144159385	-1.598104728449	-1.56755213932999	-1.57674499865798	-1.58510656085539	-1.70745470802464	0.626337835847419	1
Merged-chr8-95328370-2	chr8	95328270	95328470	+	598.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_024467, exon 2 of 2)	exon (NM_024467, exon 2 of 2)	3580.0	NM_024467	79233.0	Mm.350514	NM_024467	ENSMUSG00000046556	Zfp319	AI225750|AI413472|Znf319|mKIAA1388	zinc finger protein 319	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-37083527-4	chr17	37083422	37083622	+	978.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	2714.0	NM_146477	258469.0	Mm.271392	NM_146477	ENSMUSG00000056600	Olfr90	MOR256-21|bM573K1.2	olfactory receptor 90	protein-coding	5.18748387742539	4.59555515970899	4.9610786470425	4.67151985227348	5.56873795387805	4.62781398209854	5.14278618997339	4.81882799613579	0.258885019313645	0.45561265584681	0.919264728457769
Merged-chr19-47356095-1	chr19	47355995	47356195	+	544.0	f1_balb.idr	intron (NM_008018, intron 5 of 14)	intron (NM_008018, intron 5 of 14)	-82506.0	NR_105961	102466782.0		NR_105961	ENSMUSG00000098786	Mir6995	Gm27576|mmu-mir-6995	microRNA 6995	ncRNA	2.61626484947731	2.49953404801671	1.16588631816014	1.1362825564459	3.13413248368292	2.62744382626626	1.45519312587538	1.62787629982516	0.749714870164815	0.494167738915742	0.935679785535167
Merged-chr16-75866378-2	chr16	75866278	75866478	+	958.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023380, intron 7 of 7)	Lx4A|LINE|L1	42888.0	NM_023380	67742.0	Mm.131406	NM_023380	ENSMUSG00000022876	Samsn1	4930571B16Rik|930571B16Rik|Hacs1|SLy2	SAM domain, SH3 domain and nuclear localization signals, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-57389839-4	chr16	57389731	57389931	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	36554.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-98567824-4	chr15	98567720	98567920	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009833)	promoter-TSS (NM_009833)	-184.0	NM_009833	12455.0	Mm.29941	NM_009833	ENSMUSG00000011960	Ccnt1	2810478G24Rik|AI115585|CycT1	cyclin T1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-91249332-5	chr1	91249299	91249499	+	802.56665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355761)	promoter-TSS (NM_001355761)	-905.0	NM_001355763	67921.0	Mm.337238	NM_026454	ENSMUSG00000034343	Ube2f	2510010F15Rik|AI851109	ubiquitin-conjugating enzyme E2F (putative)	protein-coding	-0.859082918983678	-0.988263333422384	-1.00040322824838	-1.00311683473178	-1.00626376281094	-0.985632567570811	-0.997655022158689	-0.350334081862082	2.02436496650785	0.517018710074872	1
Merged-chr7-29766753-2	chr7	29766653	29766853	+	628.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1799.0	NM_023750	74352.0	Mm.251083	NM_023750	ENSMUSG00000046185	Zfp84	2210410P13Rik|4633401C23Rik|AI415447|BB081605|C86188|KRAB18|Zfp69	zinc finger protein 84	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-21644733-2	chr16	21644633	21644833	+	645.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001285894)	TTS (NM_001285894)	49932.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-23762584-7	chr13	23762470	23762670	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013550)	promoter-TSS (NM_013550)	-184.0	NM_013550	360198.0	Mm.221301	NM_013550	ENSMUSG00000069265	Hist1h3a	-	histone cluster 1, H3a	protein-coding	3.99652738598632	3.12572674697047	4.35181890036166	3.67810468938741	4.15878573042746	3.15032307608107	4.23690752572241	2.93658552067982	-0.159509813653295	0.774313174561578	0.998431161219273
Merged-chr4-62286503-4	chr4	62286407	62286607	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025286)	promoter-TSS (NM_025286)	78.0	NM_025286	20530.0	Mm.292539	NM_025286	ENSMUSG00000066152	Slc31a2	AI604396|CTR2	solute carrier family 31, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-29973373-3	chr14	29973277	29973477	+	709.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_019979, exon 4 of 5)	exon (NM_019979, exon 4 of 5)	-4960.0	NM_027493	56249.0	Mm.215110	NM_027493	ENSMUSG00000015971	Actr8	5730542K05Rik|ARP8	ARP8 actin-related protein 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-79626376-3	chr12	79626262	79626462	+	842.944458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 7 of 10)	MamRep137|DNA|TcMar-Tigger	298371.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27425053-2	chr2	27424953	27425153	+	940.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009500, intron 1 of 27)	intron (NM_009500, intron 1 of 27)	2555.0	NR_133905	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-102658603-3	chr13	102658504	102658704	+	973.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34943.0	NM_001360519	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	0.942536303004474	0.258733169755929	0.765584565740568	0.034209139305261	0.0265606548544557	0.0480476367086374	0.0411107002999118	0.0351499614929909	-4.19468166748655	0.0473813400541428	1
Merged-chr10-77976221-2	chr10	77976121	77976321	+	843.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2429.0	NM_026431	67884.0	Mm.297512	NM_026431	ENSMUSG00000020284	1810043G02Rik	AV026620|D10Jhu13e	RIKEN cDNA 1810043G02 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-122474295-1	chr3	122474195	122474395	+	588.666687	f0_balb.idr	intron (NM_013867, intron 3 of 11)	intron (NM_013867, intron 3 of 11)	-9274.0	NM_001355264	29815.0	Mm.45815	NM_013867	ENSMUSG00000028121	Bcar3	AI131758|AND-34	breast cancer anti-estrogen resistance 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-172471513-2	chr2	172471413	172471613	+	544.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1041.0	NM_029608	76426.0	Mm.46148	NM_029608	ENSMUSG00000027505	Fam209	1700029J11Rik	family with sequence similarity 209	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-12436328-4	chr19	12436253	12436453	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	8448.0	NM_019540	56093.0	Mm.285849	NM_019540	ENSMUSG00000040065	Pfpl	Epcs5|Epcs50	pore forming protein-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-54157796-2	chr11	54157696	54157896	+	752.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4|LINE|L1	55492.0	NR_045506	71056.0	Mm.56332	NR_045506	ENSMUSG00000086209	4933405E24Rik	-	RIKEN cDNA 4933405E24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-105702593-2	chr5	105702493	105702693	+	713.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_178701, intron 1 of 2)	PB1D7|SINE|Alu	1783.0	NM_178701	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-139919073-4	chr2	139918978	139919178	+	951.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110352, intron 9 of 12)	Lx8|LINE|L1	147727.0	NM_001159640	75812.0	Mm.293449	NM_175225	ENSMUSG00000039033	Tasp1	4930485D02Rik|AW986064	taspase, threonine aspartase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91414117-2	chr16	91414017	91414217	+	790.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008349, intron 3 of 6)	L1MD|LINE|L1	7882.0	NM_008349	16155.0	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-36554449-2	chr19	36554342	36554542	+	692.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172637)	promoter-TSS (NM_172637)	-197.0	NM_001163471	226098.0	Mm.61107	NM_172637	ENSMUSG00000041180	Hectd2	4921524L07|A630025O09Rik|AW212605	HECT domain E3 ubiquitin protein ligase 2	protein-coding	1.54615520779385	3.37320872389745	2.02386323488904	0.950595735121234	2.18483932482238	1.02312312865736	2.17482362600655	0.95577216435142	-1.29219139731115	0.280375653113325	0.783412873231201
Merged-chr12-25150850-2	chr12	25150747	25150947	+	666.5	f0_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21673.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	2.50206005554638	0.447407490296955	0.427937757571998	1.05649868237595	0.626995056207177	0.451686149468202	0.709836032114184	0.888083324102408	-2.60203279071477	0.0895679944835736	0.462143118325939
Merged-chr6-3183927-3	chr6	3183811	3184011	+	916.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-104608.0	NR_036696	667335.0	Mm.380219	NR_036696	ENSMUSG00000106779	Gm8579	EG667335	spermatogenesis associated glutamate (E)-rich protein 4a pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-38823990-4	chr6	38823883	38824083	+	965.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010433, intron 1 of 14)	intron (NM_010433, intron 1 of 14)	13328.0	NM_001136065	15258.0	Mm.23790	NM_010433	ENSMUSG00000061436	Hipk2	1110014O20Rik|B230339E18Rik|Stank	homeodomain interacting protein kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-25876767-2	chr17	25876667	25876867	+	743.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001100454)	TTS (NM_001100454)	1267.0	NM_026686	68347.0	Mm.35098	NM_026686	ENSMUSG00000025731	Mettl26	0610011F06Rik	methyltransferase like 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122979010-1	chr5	122978910	122979110	+	548.0	f1_balb.idr	intron (NM_001003953, intron 4 of 22)	intron (NM_001003953, intron 4 of 22)	10089.0	NM_001003953	30841.0	Mm.86406	NM_013910	ENSMUSG00000029475	Kdm2b	Cxxc2|Fbl10|Fbxl10|Jhdm1b|PCCX2	lysine (K)-specific demethylase 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-60775324-3	chr18	60775219	60775419	+	912.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020600, intron 1 of 4)	intron (NM_020600, intron 1 of 4)	723.0	NM_020600	20044.0	Mm.43778	NM_020600	ENSMUSG00000024608	Rps14	2600014J02Rik|AL023078	ribosomal protein S14	protein-coding	-0.0605216937979548	-0.295031712822839	0.231395494926281	-0.301620450382578	-0.0544539291358303	-0.294188618259478	-0.13055558552905	-0.301121471973866	-1.06310193850397	0.650068358799978	1
Merged-chr17-64622481-4	chr17	64622360	64622560	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008549, intron 1 of 21)	intron (NM_008549, intron 1 of 21)	20811.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-44829577-2	chr2	44829477	44829677	+	741.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172662, intron 2 of 10)	MTEb-int|LTR|ERVL-MaLR	32045.0	NM_172662	227835.0	Mm.314312	NM_172662	ENSMUSG00000036890	Gtdc1	E330008O22Rik	glycosyltransferase-like domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-77878053-5	chr14	77877944	77878144	+	949.8666380000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3127.0	NM_025384	66148.0	Mm.248046	NM_025384	ENSMUSG00000022013	Dnajc15	1110003P16Rik|Dnajd1	DnaJ heat shock protein family (Hsp40) member C15	protein-coding	3.07177427102556	3.67275562037207	3.40930125242331	3.15285721997396	3.24557257869128	1.74368517131376	3.51050676103242	3.07829242850827	-0.480616806788109	0.472469088901533	0.926125823511231
Merged-chr4-109981723-2	chr4	109981623	109981823	+	990.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_172296, exon 3 of 3)	exon (NM_172296, exon 3 of 3)	3698.0	NM_172296	242620.0	Mm.32825	NM_172296	ENSMUSG00000047143	Dmrta2	Dmrt5	doublesex and mab-3 related transcription factor like family A2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-54529541-4	chr8	54529435	54529635	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029701, intron 1 of 4)	CpG	463.0	NM_029701	76687.0	Mm.86437	NM_029701	ENSMUSG00000054408	Spcs3	1810011E08Rik|SPC22/23	signal peptidase complex subunit 3 homolog (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-27618929-2	chr3	27618829	27619029	+	726.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356953, intron 4 of 26)	ID_B1|SINE|B4	-33934.0	NR_037275	100526525.0		NR_037275	ENSMUSG00000092695	Mir3092	mir-3092|mmu-mir-3092	microRNA 3092	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-8763519-4	chr19	8763432	8763632	+	971.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016813, intron 3 of 20)	intron (NM_016813, intron 3 of 20)	6415.0	NM_001276704	53319.0	Mm.7271	NM_016813	ENSMUSG00000010097	Nxf1	Mex67|Mvb1|Tap	nuclear RNA export factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80339373-2	chr7	80339150	80339350	+	779.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_133952, intron 3 of 19)	intron (NM_133952, intron 3 of 19)	969.0	NM_133952	101869.0	Mm.243024	NM_133952	ENSMUSG00000030533	Unc45a	AW538196	unc-45 myosin chaperone A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-109565757-4	chr8	109565653	109565853	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175646)	promoter-TSS (NM_175646)	108.0	NR_151644	64340.0	Mm.23705	NM_178380	ENSMUSG00000037993	Dhx38	5730550P09Rik|AI325984|AW540902|Ddx38|KIAA0224|Prp16	DEAH (Asp-Glu-Ala-His) box polypeptide 38	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-88846231-2	chr6	88846131	88846331	+	551.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045880, exon 3 of 3)	non-coding (NR_045880, exon 3 of 3)	3377.0	NR_045880	100038356.0	Mm.442704	NR_045880	ENSMUSG00000085828	Gm15612	-	predicted gene 15612	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-76479955-3	chr14	76479842	76480042	+	661.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207652, intron 1 of 2)	intron (NM_207652, intron 1 of 2)	-8494.0	NM_001177751	21807.0	Mm.153272	NM_009366	ENSMUSG00000022010	Tsc22d1	AA589566|AW105905|Egr5|TSC-22|Tgfb1i4|Tsc|Tsc22	TSC22 domain family, member 1	protein-coding	1.26940910632955	0.467057897667406	0.45842860803868	0.775241231237608	0.850650252605575	1.12353137965366	0.652307407431398	0.452901753683835	-0.0169158007540707	0.991989786039375	1
Merged-chr13-91461978-4	chr13	91461882	91462082	+	953.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360776, intron 1 of 15)	CpG	885.0	NM_024186	66970.0	Mm.343095	NM_024186	ENSMUSG00000003992	Ssbp2	1500004K09Rik|2310079I02Rik|9330163K02Rik|A830008M03Rik|AU067692|AW558684|Hspc116|SSDP2	single-stranded DNA binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-8666860-4	chr4	8666763	8666963	+	999.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23543.0	NM_001277149	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-151195526-4	chr5	151195445	151195645	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5352.0	NR_153382	243362.0	Mm.209272	NM_146258	ENSMUSG00000016128	Stard13	DLC2|GT650	StAR-related lipid transfer (START) domain containing 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-51605332-2	chr11	51605232	51605432	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001048061, intron 3 of 7)	intron (NM_001048061, intron 3 of 7)	1549.0	NM_001048061	15384.0	Mm.256875	NM_010448	ENSMUSG00000020358	Hnrnpab	3010025C11Rik|CBF-A|Cgbfa|Hnrpab	heterogeneous nuclear ribonucleoprotein A/B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-60707879-4	chr11	60707775	60707975	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008502, intron 11 of 20)	intron (NM_008502, intron 11 of 20)	8185.0	NM_008502	16897.0	Mm.285453	NM_008502	ENSMUSG00000020536	Llgl1	AI325176|Lgl1|Llglh|Mgl1	LLGL1 scribble cell polarity complex component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-14703153-3	chr14	14703056	14703256	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001360516, exon 1 of 25)	5' UTR (NM_001360516, exon 1 of 25)	131.0	NM_001360509	218756.0	Mm.258893	NM_001033270	ENSMUSG00000021733	Slc4a7	E430014N10Rik|NBC3|NBCn1|NBCn1-G|Tg(Thy1-SNCA)12Mjff	solute carrier family 4, sodium bicarbonate cotransporter, member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-97815116-2	chr4	97815016	97815216	+	846.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_010905, intron 2 of 10)	intron (NM_010905, intron 2 of 10)	37490.0	NM_010905	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132211669-4	chr4	132211567	132211767	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145393, intron 1 of 4)	CpG-10406	589.0	NM_145393	213541.0	Mm.23998	NM_145393	ENSMUSG00000040025	Ythdf2	9430020E02Rik|HGRG8|NY-REN-2	YTH domain family 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-51844693-1	chr12	51844593	51844793	+	729.0	f0_c57.idr	Intergenic	Intergenic	-15157.0	NM_144788	207304.0	Mm.249391	NM_144788	ENSMUSG00000035247	Hectd1	A630086P08Rik|AI844876|b2b327Clo|opm	HECT domain E3 ubiquitin protein ligase 1	protein-coding	2.32898302846564	2.37841360701046	2.51946258081937	1.81412197520783	2.43556018899474	2.39542841077656	2.53871879009241	1.82221817935496	0.0966325752136123	0.908848299653354	0.998431161219273
Merged-chr4-149954300-4	chr4	149954208	149954408	+	860.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029035, intron 1 of 2)	CpG	698.0	NM_029035	74646.0	Mm.30	NM_029035	ENSMUSG00000039911	Spsb1	1110014L01Rik|4930422J18Rik|AI596360|AI854583|SSB-1|SSB1	splA/ryanodine receptor domain and SOCS box containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-87151664-4	chr3	87151558	87151758	+	968.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170985, intron 1 of 15)	intron (NM_001170985, intron 1 of 15)	23089.0	NM_001170985	170643.0	Mm.89552	NM_130867	ENSMUSG00000041734	Kirrel	6720469N11Rik|Kirrel1|Neph1	kirre like nephrin family adhesion molecule 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-29412619-1	chr2	29412519	29412719	+	601.0	f0_balb.idr	intron (NM_001290490, intron 3 of 5)	intron (NM_001290490, intron 3 of 5)	34105.0	NM_001290490	68975.0	Mm.330109	NM_026896	ENSMUSG00000026799	Med27	1500015J03Rik|2310042P07Rik|AA682045|Crsp8|D2Ertd434e	mediator complex subunit 27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-64814367-2	chr9	64814267	64814467	+	730.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162917, intron 2 of 34)	intron (NM_001162917, intron 2 of 34)	3356.0	NM_001162917	102442.0	Mm.222473	NM_176935	ENSMUSG00000053641	Dennd4a	AI115600|AI851943|F730015K02Rik	DENN/MADD domain containing 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-32122560-4	chr5	32122448	32122648	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13924.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	1.47542237550375	0.96907729468257	1.81811473150776	1.55645156519996	1.48775144097934	0.972439094107647	1.73095317106097	1.44217095538122	-0.194171597304366	0.876337536416294	0.998431161219273
Merged-chr15-80219859-2	chr15	80219759	80219959	+	798.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14221.0	NM_001357659	239555.0	Mm.307163	NM_178719	ENSMUSG00000022412	Mief1	A230016E22|AI452372|Smcr7l	mitochondrial elongation factor 1	protein-coding	1.20160793632593	0.653007039939155	1.82368235516154	0.836292199267074	0.958641450437234	0.656168936805122	1.67121183286946	0.629560624387892	-0.566233410463369	0.70869398155937	0.998431161219273
Merged-chr19-8756974-4	chr19	8756855	8757055	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001276704)	promoter-TSS (NM_001276704)	14.0	NR_132423	102640359.0	Mm.440831	NR_132423		1700023D09Rik	AV208457	RIKEN cDNA 1700023D09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-79051513-2	chr4	79051413	79051613	+	566.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	457466.0	NR_131142	623726.0		NR_131142		A430085M09Rik	EG623726	RIKEN cDNA A430085M09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-90051866-3	chr13	90051762	90051962	+	786.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028012, intron 3 of 7)	RLTR18-int|LTR|ERVK	37746.0	NM_028012	108138.0	Mm.37531	NM_028012	ENSMUSG00000021615	Xrcc4	2310057B22Rik|AW413319|AW545101	X-ray repair complementing defective repair in Chinese hamster cells 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-28709941-1	chr3	28709841	28710041	+	557.0	f1_balb.idr	intron (NM_031197, intron 3 of 10)	intron (NM_031197, intron 3 of 10)	12038.0	NM_031197	20526.0	Mm.18443	NM_031197	ENSMUSG00000027690	Slc2a2	AI266973|Glut-2|Glut2	solute carrier family 2 (facilitated glucose transporter), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-86664817-2	chr6	86664717	86664917	+	637.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010751, intron 2 of 5)	intron (NM_010751, intron 2 of 5)	4342.0	NM_010751	17119.0	Mm.279580	NM_010751	ENSMUSG00000001156	Mxd1	AW122478|Mad|Mad1	MAX dimerization protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-92349657-6	chr5	92349583	92349783	+	954.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021274)	promoter-TSS (NM_021274)	-794.0	NM_021274	15945.0	Mm.877	NM_021274	ENSMUSG00000034855	Cxcl10	C7|CRG-2|INP10|IP-10|IP10|Ifi10|Scyb10|gIP-10|mob-1	chemokine (C-X-C motif) ligand 10	protein-coding	3.21229864489012	3.22741602713969	3.54979676480804	3.81859894935947	3.44113027878888	3.13946846978515	2.78320366189807	3.04721238274148	-0.567885338869189	0.325006877406837	0.827680030329483
Merged-chr7-83062252-4	chr7	83062147	83062347	+	924.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-86223.0	NM_177895	330578.0	Mm.5796	NM_177895	ENSMUSG00000053528	A530021J07Rik	-	Riken cDNA A530021J07 gene	protein-coding	1.70222633859792	2.35450872637757	1.20070312980584	1.17570429173103	2.45977007778035	1.93657937436648	2.16521241585954	3.08240802064268	1.91839435563591	0.0620332112741052	0.369672749437109
Merged-chr18-3337588-8	chr18	3337511	3337711	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001110852)	promoter-TSS (NM_001110852)	-22.0	NM_001110852	12916.0	Mm.5244	NM_013498	ENSMUSG00000063889	Crem	ICER|ICERI	cAMP responsive element modulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-5645233-4	chr4	5645131	5645331	+	895.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173426, intron 1 of 2)	intron (NM_173426, intron 1 of 2)	1141.0	NM_173426	242297.0	Mm.331470	NM_173426	ENSMUSG00000049119	Fam110b	1700012H17Rik|5031405P22|AW049855	family with sequence similarity 110, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-20787240-4	chr18	20787130	20787330	+	934.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40826.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80103324-2	chr10	80103224	80103424	+	562.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183426)	promoter-TSS (NM_183426)	-622.0	NM_001359637	216161.0	Mm.262102	NM_183426	ENSMUSG00000035673	Sbno2	BC019206|F730040C21|Sno|Stno	strawberry notch 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35421729-2	chr17	35421742	35421942	+	864.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-3005.0	NM_023124	15019.0	Mm.486287	NM_023124		H2-Q8	H-2Q8|MMS10-T|Ms10t|Qa-2|Qa-8|Qa8	histocompatibility 2, Q region locus 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-3999356-4	chr15	3999262	3999462	+	846.341675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045740, intron 2 of 2)	RLTR17|LTR|ERVK	3323.0	NR_045740	328489.0	Mm.447020	NR_045740	ENSMUSG00000097662	Gm2093	100039196|A630020A06	predicted gene 2093	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-47318990-2	chr6	47318890	47319090	+	556.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	74594.0	NM_025771	66797.0	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-12770131-3	chr17	12770021	12770221	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010515)	promoter-TSS (NM_010515)	-415.0	NM_010515	16004.0	Mm.26553	NM_010515	ENSMUSG00000023830	Igf2r	AI661837|CD222|CI-MPR|M6P/IGF2R|Mpr300	insulin-like growth factor 2 receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-26142077-2	chr2	26141977	26142177	+	913.8333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1571.0	NM_001256521	109299.0	Mm.389259	NM_001256521		Tmem250-ps	AI551216|C330006A16Rik	transmembrane protein 250, pseudogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-152093104-2	chr2	152093004	152093204	+	550.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001160410, exon 2 of 2)	exon (NM_001160410, exon 2 of 2)	11575.0	NM_001160410	545474.0	Mm.214317	NM_001160410	ENSMUSG00000060257	Scrt2	AW060659	scratch family zinc finger 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-87085242-1	chr6	87085142	87085342	+	549.0	f0_balb.idr	intron (NM_013528, intron 15 of 18)	intron (NM_013528, intron 15 of 18)	-19504.0	NM_001167938	52372.0	Mm.282851	NM_001167937	ENSMUSG00000090891	D6Ertd527e	AU043841	DNA segment, Chr 6, ERATO Doi 527, expressed	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-123014159-4	chr4	123014060	123014260	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2433.0	NM_025873	66966.0	Mm.235030	NM_025873	ENSMUSG00000028653	Trit1	2310075G14Rik|AI314189|AI314635|AV099619|IPPT|IPT|MOD5	tRNA isopentenyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-105139621-4	chr5	105139514	105139714	+	984.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001256005)	promoter-TSS (NM_001256005)	-28.0	NM_001359080	17472.0	Mm.440525	NM_008620	ENSMUSG00000079363	Gbp4	AW228052|Mag-2|Mpa-2|Mpa2	guanylate binding protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-113793324-4	chr9	113793265	113793465	+	902.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286603)	promoter-TSS (NM_001286603)	35.0	NM_001286603	76499.0	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21617293-2	chr9	21617193	21617393	+	929.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357764, intron 1 of 34)	MIRb|SINE|MIR	1124.0	NM_001174078	20586.0	Mm.286593	NM_011417	ENSMUSG00000032187	Smarca4	BAF190A|Brg1|HP1-BP72|SNF2beta|SW1/SNF|b2b508.1Clo|b2b692Clo	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-130229813-3	chr10	130229711	130229911	+	714.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	-18683.0	NM_146300	258297.0	Mm.377419	NM_146300	ENSMUSG00000045559	Olfr827	MOR210-5	olfactory receptor 827	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-34235522-2	chr7	34235422	34235622	+	844.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	-5186.0	NM_008155	14751.0	Mm.589	NM_008155	ENSMUSG00000036427	Gpi1	Amf|Gpi|Gpi-1|Gpi-1r|Gpi-1s|Gpi-1t|Gpi1-r|Gpi1-s|Gpi1-t|Gpi1s|MF|NK|NK/GPI|Nlk|Org|Pgi|Phi	glucose phosphate isomerase 1	protein-coding	1.76908017455365	2.00270228970727	1.57001547834596	1.20681062747205	1.32504415539988	2.01883953642874	1.58239287298407	1.00220048324626	-0.415798342062559	0.721181850546687	0.998431161219273
Merged-chr2-129092371-4	chr2	129092273	129092473	+	773.158325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027192, intron 6 of 6)	intron (NM_027192, intron 6 of 6)	-8623.0	NM_009086	20017.0	Mm.259078	NM_009086	ENSMUSG00000027395	Polr1b	128kDa|D630020H17Rik|RPA116|RPA135|RPA2|Rpo1-2	polymerase (RNA) I polypeptide B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-126051801-4	chr4	126051717	126051917	+	902.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025544, intron 5 of 7)	intron (NM_025544, intron 5 of 7)	4889.0	NM_025544	66407.0	Mm.195628	NM_025544	ENSMUSG00000028861	Mrps15	1500003E24Rik|2410002B11Rik|Mprs15	mitochondrial ribosomal protein S15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-49212812-2	chr13	49212712	49212912	+	716.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026738, intron 1 of 5)	intron (NM_026738, intron 1 of 5)	3214.0	NM_026738	68480.0	Mm.3336	NM_026738	ENSMUSG00000037960	Card19	1110007C09Rik|AI851695|Bincard	caspase recruitment domain family, member 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-22312476-2	chr9	22312376	22312576	+	689.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B2|LTR|ERVK	-4838.0	NM_145612	235050.0	Mm.306038	NM_145612	ENSMUSG00000066829	Zfp810	BC005471	zinc finger protein 810	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-45623667-4	chr17	45623569	45623769	+	914.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	-21567.0	NM_001177469	653016.0	Mm.45676	NM_001177468	ENSMUSG00000079471	Mymx	EG653016|Esgp|Gm7325|minion|myomerger	myomixer, myoblast fusion factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-82782777-2	chr6	82782677	82782877	+	625.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-8323.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120453366-2	chr11	120453266	120453466	+	702.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_126089, intron 1 of 3)	intron (NR_126089, intron 1 of 3)	134.0	NR_126089	18588.0	Mm.39200	NM_012065	ENSMUSG00000025386	Pde6g	Pdeg|p3AT	phosphodiesterase 6G, cGMP-specific, rod, gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-43274580-2	chr7	43274480	43274680	+	574.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	38720.0	NM_001357812	69930.0	Mm.45367	NM_027264	ENSMUSG00000012640	Zfp715	2610041B18Rik|mszf15	zinc finger protein 715	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-109312386-2	chr11	109312286	109312486	+	611.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14205.0	NM_011268	19739.0	Mm.38548	NM_011268	ENSMUSG00000020599	Rgs9	RGS9-1|Rgs9-2	regulator of G-protein signaling 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-174050558-2	chr1	174050458	174050658	+	901.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_146716, exon 1 of 1)	exon (NM_146716, exon 1 of 1)	183.0	NM_146716	258711.0	Mm.377648	NM_146716	ENSMUSG00000047048	Olfr432	MOR123-2	olfactory receptor 432	protein-coding	-0.662826441749988	-1.00555184936033	-1.01675512286785	-1.01992432642343	-0.654846858003193	-1.00312405325568	-1.01421894731451	-1.01959449741028	0.0418081237259606	0.989738874530268	1
Merged-chr13-13394234-4	chr13	13394131	13394331	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031999)	promoter-TSS (NM_031999)	-607.0	NM_031999	83924.0	Mm.379269	NM_031999	ENSMUSG00000021306	Gpr137b	AI788917|AU016435|AW546472|C730041E01|C80550|C80741|D13Abb1e|Tm7sf1	G protein-coupled receptor 137B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-7264996-2	chr19	7264896	7265096	+	816.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2398.0	NM_054048	104383.0	Mm.283859	NM_054048	ENSMUSG00000024968	Rcor2	1A13|AW122124|CoREST|Rcor|Rcor1	REST corepressor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76069268-3	chr15	76069144	76069344	+	768.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_133691)	TTS (NM_133691)	540.0	NM_134089	105782.0	Mm.25568	NM_134089	ENSMUSG00000022568	Scrib	AI118201|CRIB|Crc|SCRIB1|Scrb1|mKIAA0147|vartul	scribbled planar cell polarity	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3845739-2	chr12	3845639	3845839	+	548.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007872, intron 2 of 22)	intron (NM_007872, intron 2 of 22)	16505.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-181460494-2	chr2	181460394	181460594	+	551.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG-8993	-1068.0	NM_028125	72147.0	Mm.486504	NM_027656	ENSMUSG00000027583	Zbtb46	2610019F01Rik|4933406L05Rik|BZEL|Btbd4	zinc finger and BTB domain containing 46	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-107296620-2	chr11	107296520	107296720	+	883.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 4 of 9)	intron (NR_153311, intron 4 of 9)	-107239.0	NM_001161329	68979.0	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-87842885-4	chr6	87842793	87842993	+	861.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_013493, exon 5 of 5)	3' UTR (NM_013493, exon 5 of 5)	-4134.0	NM_133934	57905.0	Mm.241546	NM_133934	ENSMUSG00000030056	Isy1	5830446M03Rik|AI181014|AU020769	ISY1 splicing factor homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-84685680-4	chr18	84685594	84685794	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023149)	promoter-TSS (NM_023149)	8.0	NM_023149	66054.0	Mm.29646	NM_023149	ENSMUSG00000024644	Cndp2	0610010E05Rik|C76600|Cn2|Dip-2|Pep-1|Pep1	CNDP dipeptidase 2 (metallopeptidase M20 family)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28408483-2	chr17	28408383	28408583	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010220, intron 8 of 10)	intron (NM_010220, intron 8 of 10)	-43267.0	NM_021478	22157.0	Mm.42102	NM_021478	ENSMUSG00000037446	Tulp1	Tulp1l	tubby like protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-138231669-3	chr5	138231569	138231769	+	964.8666380000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013773, intron 2 of 5)	intron (NM_001013773, intron 2 of 5)	5765.0	NM_001013773	381680.0	Mm.156846	NM_001013773	ENSMUSG00000047592	Nxpe5	-	neurexophilin and PC-esterase domain family, member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-49049442-4	chr16	49049324	49049524	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8062.0	NM_001166210	667772.0	Mm.301387	NM_001166210	ENSMUSG00000092009	Myh15	EG667772	myosin, heavy chain 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-37157159-4	chr19	37157060	37157260	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198300, intron 2 of 10)	intron (NM_198300, intron 2 of 10)	-16683.0	NR_045329	319931.0	Mm.446730	NR_045329	ENSMUSG00000097591	A330032B11Rik	-	RIKEN cDNA A330032B11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-77626909-4	chr10	77626792	77626992	+	774.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019803, intron 1 of 5)	intron (NM_019803, intron 1 of 5)	4571.0	NM_019803	22213.0	Mm.458125	NM_019803	ENSMUSG00000009293	Ube2g2	1110003O05Rik|D10Xrf369|UBC7|Ubc7p	ubiquitin-conjugating enzyme E2G 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139283159-2	chr5	139283059	139283259	+	946.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_172723, intron 4 of 10)	intron (NM_172723, intron 4 of 10)	29662.0	NM_001163316	67604.0	Mm.270137	NM_026269	ENSMUSG00000025858	Get4	1110007L15Rik|AW412535|Cee	golgi to ER traffic protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35999527-3	chr17	35999424	35999624	+	717.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015618, intron 1 of 1)	intron (NR_015618, intron 1 of 1)	5020.0	NR_015618	77810.0	Mm.483143	NR_015618		A930015D03Rik	-	RIKEN cDNA A930015D03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59951091-4	chr15	59950994	59951194	+	924.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	65524.0	NM_027668	71088.0	Mm.425950	NM_027668	ENSMUSG00000071749	4933412E24Rik	-	RIKEN cDNA 4933412E24 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-36971241-2	chr17	36971141	36971341	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9996.0	NM_029747	76797.0	Mm.159787	NM_029747	ENSMUSG00000064308	2410137M14Rik	-	RIKEN cDNA 2410137M14 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127659789-2	chr10	127659561	127659761	+	878.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_009284, exon 21 of 22)	exon (NM_009284, exon 21 of 22)	7042.0	NM_001122895	17937.0	Mm.336898	NM_008668	ENSMUSG00000025402	Nab2	AI451907	Ngfi-A binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-24034282-4	chr5	24034187	24034387	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3597.0	NM_053090	84652.0	Mm.304976	NM_053090	ENSMUSG00000028995	Fam126a	AB030242|Drctnnb1a	family with sequence similarity 126, member A	protein-coding	3.86549808856796	4.72791061276419	4.99077045636699	4.13846679494448	3.95988564960998	4.75970256879514	5.30805582645593	4.48285015929121	0.265424001087555	0.539703695638456	0.954403851908463
Merged-chr8-126883391-2	chr8	126883291	126883491	+	894.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	34371.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114723341-4	chr11	114723242	114723442	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4070.0	NM_001034878	432611.0	Mm.212764	NM_001034878	ENSMUSG00000034706	Dnaic2	C030015H18Rik|Dnai2|Gm728|b2b3405Clo	dynein, axonemal, intermediate chain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83433812-2	chr6	83433712	83433912	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347313, intron 3 of 11)	intron (NM_001347313, intron 3 of 11)	7866.0	NM_183138	194388.0	Mm.211030	NM_183138	ENSMUSG00000034832	Tet3	B430006D22Rik|BC037432|D230004J03Rik	tet methylcytosine dioxygenase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-86389435-4	chr1	86389329	86389529	+	809.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001319227)	promoter-TSS (NM_001319227)	-68.0	NM_001319227	14767.0	Mm.389159	NM_010341	ENSMUSG00000026237	Nmur1	FM-3|Gpr66|NMU-R1|NMU1R|NmU-R	neuromedin U receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-15949421-2	chr7	15949321	15949521	+	703.375	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_153068, exon 6 of 6)	3' UTR (NM_153068, exon 6 of 6)	-3313.0	NM_133831	68077.0	Mm.277634	NM_133831	ENSMUSG00000041560	Nop53	5330430H08Rik|9430097C02Rik|AU041936|AW536441|Gltscr2|PICT-1|R74911	NOP53 ribosome biogenesis factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-34863625-2	chr6	34863525	34863725	+	896.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_197986, intron 1 of 1)	intron (NM_197986, intron 1 of 1)	479.0	NM_197986	68487.0	Mm.248440	NM_197986	ENSMUSG00000057137	Tmem140	1110007F12Rik	transmembrane protein 140	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114915226-4	chr11	114915120	114915320	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19166.0	NM_001347651	217304.0	Mm.185355	NM_199221	ENSMUSG00000063193	Cd300lb	CLM-7|Clm7|Gm253|LMIR5	CD300 molecule like family member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-81850400-3	chr7	81850292	81850492	+	875.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8609.0	NR_111910	107769.0	Mm.221412	NM_145375	ENSMUSG00000038623	Tm6sf1	AI428514|BC023123|C630016D09Rik	transmembrane 6 superfamily member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-80382726-1	chr11	80382626	80382826	+	645.0	f0_c57.idr	promoter-TSS (NM_011751)	promoter-TSS (NM_011751)	-553.0	NM_001130169	22680.0	Mm.401332	NM_011751	ENSMUSG00000017421	Zfp207	8430401D15Rik|BuGZ|Zep|Znf207	zinc finger protein 207	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81193252-3	chr10	81193143	81193343	+	865.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_007828)	TTS (NM_007828)	-1448.0	NR_015477	69678.0	Mm.81562	NR_015477		Atcayos	2310050B05Rik	ataxia, cerebellar, Cayman type, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-6155186-2	chr7	6155092	6155292	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_001013012, intron 1 of 2)	CpG	779.0	NM_001013012	67109.0	Mm.3254	NM_001013012	ENSMUSG00000046792	Zfp787	2210018M03Rik|Znf787	zinc finger protein 787	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-83344003-4	chr10	83343914	83344114	+	816.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6197.0	NM_177388	338365.0	Mm.67073	NM_177388	ENSMUSG00000034591	Slc41a2	A230035L05Rik|SLC41A1-L1	solute carrier family 41, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-28924024-3	chr2	28923897	28924097	+	854.25	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7329.0	NM_001355434	54422.0	Mm.21390	NM_019446	ENSMUSG00000026805	Barhl1	Dres115|MBH2	BarH like homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-73619168-2	chr8	73619068	73619268	+	777.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1VL2|LINE|L1	-265628.0	NM_010687	16795.0	Mm.324371	NM_010687	ENSMUSG00000004383	Large1	BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd	LARGE xylosyl- and glucuronyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-34982878-2	chr6	34982778	34982978	+	566.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4879.0	NM_001025573	243753.0	Mm.440221	NM_001025573	ENSMUSG00000029847	Slc23a4	2010107G12Rik|Gm468	solute carrier family 23 member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-122652143-2	chr6	122652043	122652243	+	730.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB5|LINE|L1	25719.0	NM_139218	73708.0	Mm.27982	NM_139218	ENSMUSG00000046323	Dppa3	2410075G02Rik|PCG7|PGC7|Stella	developmental pluripotency-associated 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33747665-4	chr16	33747540	33747740	+	919.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175256, intron 10 of 14)	L1MA6|LINE|L1	-46397.0	NM_010739	17063.0	Mm.3177	NM_010739	ENSMUSG00000022824	Muc13	114/A10|14/A10|AI159736|Lrrp|Ly64|NJ-1	mucin 13, epithelial transmembrane	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-11925866-4	chr6	11925764	11925964	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029404)	promoter-TSS (NM_029404)	-17.0	NM_001362122	75725.0	Mm.212411	NM_029404	ENSMUSG00000029629	Phf14	1110001C23Rik|4932409F11Rik|5730446A07Rik|AA623952|AV297001|mKIAA0783	PHD finger protein 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-21822945-4	chr14	21822855	21823055	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8606.0	NM_011695	22334.0	Mm.262327	NM_011695	ENSMUSG00000021771	Vdac2	Vdac6|mVDAC2|mVDAC6	voltage-dependent anion channel 2	protein-coding	1.31469098929624	1.63695118320949	2.04976028419626	1.53386955471576	0.962053396354683	1.0258413165624	2.15891553032309	1.90102645494012	-0.0806744373307316	0.94725105157511	0.998431161219273
Merged-chr15-50402768-3	chr15	50402680	50402880	+	758.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	486269.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-14206853-2	chr10	14206753	14206953	+	606.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	240474.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72899969-4	chr6	72899902	72900102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347231)	promoter-TSS (NM_001347231)	-23.0	NM_019715	74287.0	Mm.29194	NM_019715	ENSMUSG00000055239	Kcmf1	1700094M07Rik|Debt91|Pmcf	potassium channel modulatory factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-16999017-2	chr11	16998917	16999117	+	868.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019549, intron 1 of 9)	intron (NM_019549, intron 1 of 9)	9701.0	NM_019549	56193.0	Mm.98232	NM_019549	ENSMUSG00000020120	Plek	2010300B13Rik	pleckstrin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-134005774-4	chr4	134005687	134005887	+	996.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_145833, exon 4 of 4)	3' UTR (NM_145833, exon 4 of 4)	-4923.0	NM_026144	67422.0	Mm.100290	NM_026144	ENSMUSG00000012117	Dhdds	3222401G21Rik|CIT|DS|HDS|W91638	dehydrodolichyl diphosphate synthase	protein-coding	1.97762812745992	3.48200327481318	3.61268722389933	2.0991265886866	2.42625897838394	3.43485401058795	2.88249150296452	1.40214154796383	-0.477361995372799	0.579687659674603	0.965985075107763
Merged-chr19-55836986-2	chr19	55836886	55837086	+	712.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_138565, intron 4 of 15)	RLTR20C2_MM|LTR|ERVK	-58335.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-122296371-2	chr7	122296271	122296471	+	943.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001316672, intron 2 of 16)	intron (NM_001316672, intron 2 of 16)	7246.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-143079235-5	chr6	143079102	143079302	+	961.8666380000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362118, intron 6 of 25)	intron (NM_001362118, intron 6 of 25)	20950.0	NM_001362118	74741.0	Mm.130260	NM_029081	ENSMUSG00000030279	C2cd5	5730419I09Rik|C030008B15Rik|CDP138	C2 calcium-dependent domain containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25133250-4	chr7	25133161	25133361	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163555)	promoter-TSS (NM_001163555)	-801.0	NM_001163554	18987.0	Mm.76683	NM_011138	ENSMUSG00000008496	Pou2f2	Oct-2|Oct2a|Oct2b|Oct2c|Oct2d|Otf-2|Otf2	POU domain, class 2, transcription factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-84884927-4	chr4	84884798	84884998	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175275, intron 1 of 25)	CpG	589.0	NM_177385	338349.0	Mm.440562	NM_175275	ENSMUSG00000038070	Cntln	AI448092|B430108F07Rik|D530005L17Rik	centlein, centrosomal protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-34853943-2	chr1	34853843	34854043	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357425, intron 2 of 8)	intron (NM_001357425, intron 2 of 8)	3954.0	NM_001357425	226971.0	Mm.292751	NM_145516	ENSMUSG00000026123	Plekhb2	2310009M15Rik|AU018239|Evt2|Phdc|evt-2	pleckstrin homology domain containing, family B (evectins) member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-78918868-2	chr7	78918768	78918968	+	665.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113527, intron 2 of 2)	intron (NM_001113527, intron 2 of 2)	4633.0	NM_001113527	57444.0	Mm.322843	NM_020583	ENSMUSG00000039236	Isg20	1600023I01Rik|2010107M23Rik|20kDa|DnaQL|HEM45	interferon-stimulated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139791930-3	chr5	139791821	139792021	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010757, intron 1 of 2)	CpG	385.0	NM_010757	17135.0	Mm.157313	NM_010757	ENSMUSG00000018143	Mafk	AW061068|NF-E2|Nfe2u	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein K (avian)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-70263735-2	chr9	70263635	70263835	+	814.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_181072, intron 1 of 27)	intron (NM_181072, intron 1 of 27)	56385.0	NM_181072	71602.0	Mm.249311	NM_181072	ENSMUSG00000032220	Myo1e	2310020N23Rik|9130023P14Rik|AA407778|myosin-1e|myr 3	myosin IE	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119548753-1	chr11	119548653	119548853	+	678.0	f1_c57bl6.idr	promoter-TSS (NM_008730)	promoter-TSS (NM_008730)	123.0	NR_045099	100503830.0	Mm.428077	NR_045099	ENSMUSG00000087675	Gm11762	-	predicted gene 11762	ncRNA	0.0592177762415635	-0.65139248520686	-0.654955844913403	-0.657703937484103	-0.66158554734089	-0.650589035012036	-0.654170059570879	-0.344398597357966	-1.45331329383029	0.616388191839548	1
Merged-chr8-72713504-2	chr8	72713404	72713604	+	667.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_176940, exon 19 of 19)	3' UTR (NM_176940, exon 19 of 19)	-9766.0	NM_001113248	20467.0	Mm.2137	NM_009188	ENSMUSG00000031622	Sin3b	2810430C10Rik	transcriptional regulator, SIN3B (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70648797-2	chr11	70648697	70648897	+	939.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001316728, intron 3 of 9)	intron (NM_001316728, intron 3 of 9)	1510.0	NM_027445	70510.0	Mm.261818	NM_027445	ENSMUSG00000040746	Rnf167	0610010G05Rik|5730408C10Rik|AU019305|AV328608	ring finger protein 167	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-12439753-4	chr19	12439642	12439842	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	11837.0	NM_019540	56093.0	Mm.285849	NM_019540	ENSMUSG00000040065	Pfpl	Epcs5|Epcs50	pore forming protein-like	protein-coding	3.67421734874139	3.30925133892573	3.48069640176088	3.74230626616402	2.85768242790774	3.21927958562571	4.25019722932855	3.48175049542391	-0.0105744556037321	0.984993990117761	0.998431161219273
Merged-chr1-184035981-2	chr1	184035881	184036081	+	679.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_022019, intron 1 of 3)	intron (NM_022019, intron 1 of 3)	1600.0	NM_022019	63953.0	Mm.404024	NM_022019	ENSMUSG00000039384	Dusp10	2610306G15Rik|AI158871|MKP-5|MKP5	dual specificity phosphatase 10	protein-coding	1.80801857952999	0.947485555947419	1.31083463910433	1.53816766825933	1.82457262665289	0.950838279441069	1.32041406351455	1.54647775971611	0.0376916140970262	0.976411808287461	0.998431161219273
Merged-chr15-64019615-2	chr15	64019515	64019715	+	613.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144846, intron 1 of 11)	Lx10|LINE|L1	-21549.0	NM_001360035	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-77801143-4	chr18	77801031	77801231	+	919.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013831, intron 1 of 14)	intron (NM_013831, intron 1 of 14)	-4741.0	NR_152167	619308.0	Mm.490456	NM_001033812		F830208F22Rik	-	RIKEN cDNA F830208F22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-34958001-4	chr7	34957893	34958093	+	911.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008820, intron 7 of 14)	intron (NM_008820, intron 7 of 14)	45586.0	NM_008820	18624.0	Mm.69751	NM_008820	ENSMUSG00000063931	Pepd	Pep-4|Pep4|dal	peptidase D	protein-coding	0.599580772404468	0.63315463763982	0.622297105323132	1.2052358732048	1.14078979609939	1.53909397130438	0.993810917805804	1.09453691402931	2.01558952759346	0.195086482164166	0.675706585740666
Merged-chr10-77033895-4	chr10	77033792	77033992	+	866.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031196, intron 1 of 5)	intron (NM_031196, intron 1 of 5)	680.0	NM_031196	20509.0	Mm.265060	NM_031196	ENSMUSG00000001436	Slc19a1	AI323572|RFC|RFC-1|RFC1	solute carrier family 19 (folate transporter), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-8890402-2	chr19	8890302	8890502	+	829.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_104416, intron 2 of 2)	intron (NR_104416, intron 2 of 2)	1519.0	NR_104416	66276.0	Mm.27503	NM_025463	ENSMUSG00000071653	1810009A15Rik	-	RIKEN cDNA 1810009A15 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-3397407-2	chr6	3397293	3397493	+	798.75	f0_c57.idr|f1_c57bl6.idr	intron (NM_010156, intron 1 of 1)	intron (NM_010156, intron 1 of 1)	2178.0	NM_010156	209086.0	Mm.196013	NM_010156	ENSMUSG00000047735	Samd9l	AA175286|ESTM25|mKIAA2005	sterile alpha motif domain containing 9-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-35329131-2	chr2	35329031	35329231	+	604.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013515, intron 1 of 6)	intron (NM_013515, intron 1 of 6)	7878.0	NM_013515	13830.0	Mm.295284	NM_013515	ENSMUSG00000026880	Stom	Epb7.2	stomatin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-32642676-4	chr12	32642560	32642760	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-177675.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	1.6407267610424	2.26225821996344	2.06269327714557	2.42424473363641	1.65208905161545	2.14681979003118	2.31748759299873	2.24751099494908	-0.0396975356431978	0.965164991097634	0.998431161219273
Merged-chr4-154159180-4	chr4	154159036	154159236	+	958.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151647, intron 3 of 3)	intron (NR_151647, intron 3 of 3)	1548.0	NR_151647	67808.0	Mm.288737	NM_026388	ENSMUSG00000029030	Tprgl	1200015A19Rik|Svap30|Tprg1l|mover	transformation related protein 63 regulated like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167983436-2	chr2	167983336	167983536	+	623.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080708, intron 18 of 21)	PB1D7|SINE|Alu	27157.0	NM_001080708	69553.0	Mm.68454	NM_001080708	ENSMUSG00000074577	Ripor3	2310033K02Rik|Fam65c|Gm124	RIPOR family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-170901745-4	chr1	170901648	170901848	+	936.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	11193.0	NM_001029984	435653.0	Mm.337931	NM_001029984	ENSMUSG00000070524	Fcrlb	FREB-2|FREB2|FcRL2|Fcrlm2|Fcry|mFCRL2	Fc receptor-like B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-90908305-4	chr8	90908211	90908411	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177224, intron 2 of 39)	CpG	-23938.0	NM_001310530	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-93849913-4	chr2	93849823	93850023	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290782)	promoter-TSS (NM_001290782)	20.0	NM_001290782	329470.0	Mm.486910	NM_183220	ENSMUSG00000040272	Accs	2610203E10Rik|Phacs	1-aminocyclopropane-1-carboxylate synthase (non-functional)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-93204817-2	chr5	93204717	93204917	+	719.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_017367, intron 1 of 6)	intron (NM_017367, intron 1 of 6)	1678.0	NM_017367	12453.0	Mm.250419	NM_017367	ENSMUSG00000063015	Ccni	-	cyclin I	protein-coding	0.973861805103687	2.04012649472356	2.67505971261606	1.01167608737455	2.01866916220702	2.05698339909429	1.98060248591169	1.01552397637928	-0.175369968274339	0.887933908563433	0.998431161219273
Merged-chr5-65956061-4	chr5	65956060	65956260	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10964.0	NM_001081104	231252.0	Mm.140015	NM_001081104	ENSMUSG00000029205	Chrna9	2410015I05Rik|Acra9|EG666827|Gm8311	cholinergic receptor, nicotinic, alpha polypeptide 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-20661168-4	chr14	20661064	20661264	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001310431, exon 4 of 4)	exon (NM_001310431, exon 4 of 4)	3410.0	NM_001310432	68760.0	Mm.35789	NM_175132	ENSMUSG00000039376	Synpo2l	1110054M18Rik|Chap	synaptopodin 2-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-54899616-2	chr6	54899516	54899716	+	689.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20B3|LTR|ERVK	72045.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-118283383-3	chr7	118283284	118283484	+	825.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M3|LINE|L1	39477.0	NR_027879	67745.0	Mm.483404	NM_183267	ENSMUSG00000055159	4930583K01Rik	-	RIKEN cDNA 4930583K01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-86484488-4	chr11	86484355	86484555	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029788)	promoter-TSS (NM_029788)	-202.0	NM_029788	76892.0	Mm.262707	NM_029788	ENSMUSG00000020521	Rnft1	0610013E23Rik|AV007605	ring finger protein, transmembrane 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-102409544-2	chr11	102409444	102409644	+	704.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2027.0	NM_026542	68066.0	Mm.44226	NM_026542	ENSMUSG00000018677	Slc25a39	3010027G13Rik|D11Ertd333e	solute carrier family 25, member 39	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120231480-4	chr11	120231388	120231588	+	942.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151480, intron 1 of 1)	CpG	129.0	NR_151480	102640779.0	Mm.394084	NM_175248		2900052L18Rik	-	RIKEN cDNA 2900052L18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-119449153-4	chr6	119449043	119449243	+	653.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009525, intron 1 of 4)	(CA)n|Simple_repeat|Simple_repeat	243.0	NM_001271757	22419.0	Mm.321818	NM_009525	ENSMUSG00000030170	Wnt5b	AW545702|Wnt-5b	wingless-type MMTV integration site family, member 5B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-37443028-4	chr19	37442862	37443062	+	979.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8121.0	NM_008245	15242.0	Mm.33896	NM_008245	ENSMUSG00000024986	Hhex	Hex|Hex1|Hhex-rs2|Prh|Prhx	hematopoietically expressed homeobox	protein-coding	-0.663678470333742	-0.653989097884478	-0.105380039678836	-0.659626711435277	-0.400623207020157	-0.65326901712423	-0.656474278385112	-0.498145710750241	-0.648292808868951	0.812515253990565	1
Merged-chr9-56890015-2	chr9	56889915	56890115	+	831.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_139001, intron 3 of 9)	intron (NM_139001, intron 3 of 9)	24911.0	NM_139001	121021.0	Mm.41329	NM_139001	ENSMUSG00000032911	Cspg4	4732461B14Rik|AN2|NG2	chondroitin sulfate proteoglycan 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80349233-2	chr10	80349133	80349333	+	731.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285435)	promoter-TSS (NM_001285435)	-785.0	NR_104340	66548.0	Mm.71891	NM_025629	ENSMUSG00000043822	Adamtsl5	2010109H09Rik|Thsd6	ADAMTS-like 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-32775486-2	chr14	32775386	32775586	+	756.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-10477.0	NM_001163616	69069.0	Mm.261609	NM_001163616	ENSMUSG00000041707	1810011H11Rik	4733401I05Rik	RIKEN cDNA 1810011H11 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83634810-3	chr6	83634712	83634912	+	885.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21304.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-66927528-2	chr10	66927428	66927628	+	907.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-7144.0	NR_138561	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-9824000-2	chr3	9823900	9824100	+	637.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001195031, intron 1 of 8)	intron (NM_001195031, intron 1 of 8)	9679.0	NM_053182	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-33566405-4	chr17	33566310	33566510	+	925.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053214, intron 1 of 27)	intron (NM_053214, intron 1 of 27)	10703.0	NM_053214	17916.0	Mm.42019	NM_053214	ENSMUSG00000024300	Myo1f	C330006B10Rik	myosin IF	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106658209-2	chr11	106658109	106658309	+	962.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001032378, intron 13 of 13)	intron (NM_001032378, intron 13 of 13)	-45279.0	NM_198292	21763.0	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131138900-4	chr1	131138806	131139006	+	823.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145508)	promoter-TSS (NM_145508)	-672.0	NM_145508	226419.0	Mm.39299	NM_145508	ENSMUSG00000016526	Dyrk3	BC006704	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115677751-2	chr11	115677651	115677851	+	992.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001313936, intron 2 of 5)	intron (NM_001313936, intron 2 of 5)	21783.0	NM_001313937	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-82007930-4	chr11	82007797	82007997	+	763.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17D|LTR|ERVK	-27680.0	NM_011333	20296.0	Mm.290320	NM_011333	ENSMUSG00000035385	Ccl2	AI323594|HC11|JE|MCAF|MCP-1|MCP1|SMC-CF|Scya2|Sigje	chemokine (C-C motif) ligand 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-143056122-4	chr7	143056029	143056229	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133655, intron 1 of 7)	intron (NM_133655, intron 1 of 7)	-2443.0	NR_110354	97423.0	Mm.5250	NM_133790	ENSMUSG00000059277	R74862	-	expressed sequence R74862	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-51510276-4	chr6	51510135	51510335	+	839.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13668.0	NM_001361582	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	2.01122762362403	1.96877497452274	1.52786941049277	1.85100882754825	2.32268872053879	2.9409261094313	2.31857472307301	1.69397877764767	1.34972517813265	0.142875931371226	0.5904731564462
Merged-chr10-62544621-2	chr10	62544521	62544721	+	742.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-17176.0	NM_001358965	19073.0	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85974221-4	chr12	85974106	85974306	+	943.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347395, intron 29 of 32)	MLT1F|LTR|ERVL-MaLR	104835.0	NM_009368	21809.0	Mm.3992	NM_009368	ENSMUSG00000021253	Tgfb3	TGF-beta-3|Tgfb-3	transforming growth factor, beta 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-16983902-4	chr16	16983801	16984001	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038663, intron 1 of 7)	CpG	519.0	NM_001038663	26413.0	Mm.196581	NM_011949	ENSMUSG00000063358	Mapk1	9030612K14Rik|AA407128|AU018647|C78273|ERK|Erk2|MAPK2|PRKM2|Prkm1|p41mapk|p42mapk	mitogen-activated protein kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34157108-4	chr17	34157006	34157206	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010387, intron 2 of 5)	intron (NM_010387, intron 2 of 5)	3915.0	NM_010387	14999.0	Mm.460938	NM_010387	ENSMUSG00000079547	H2-DMb1	AI385589|H-2Mb1|H2-Mb1	histocompatibility 2, class II, locus Mb1	protein-coding	3.66261206003648	3.87418021468962	4.9135655504349	3.86083184072358	4.19177512115906	3.72135139770262	4.55964328024156	4.18639438535673	0.030063056910145	0.949063721131114	0.998431161219273
Merged-chr3-144039649-4	chr3	144039498	144039698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	162734.0	NM_001161770	16911.0	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-133550642-4	chr2	133550531	133550731	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1528.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26242216-4	chr17	26242120	26242320	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001206335, intron 1 of 12)	intron (NM_001206335, intron 1 of 12)	2022.0	NM_207217	106581.0	Mm.28844	NM_207217	ENSMUSG00000024187	Fam234a	Itfg3	family with sequence similarity 234, member A	protein-coding	-1.50561175621786	-1.47331375025452	-1.02203377115094	-1.49110398925286	-1.50334449591826	-1.47119716082604	-1.48086985756939	-1.48966786617048	-2.07776723614574	0.550394407909386	1
Merged-chr19-3934770-2	chr19	3934670	3934870	+	694.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161428)	promoter-TSS (NM_001161428)	-416.0	NM_019449	54445.0	Mm.262094	NM_019449	ENSMUSG00000036908	Unc93b1	Unc-93B1|Unc93b	unc-93 homolog B1 (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-78148699-2	chr10	78148599	78148799	+	812.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21069.0	NM_138601	28295.0	Mm.268691	NM_138601	ENSMUSG00000053329	D10Jhu81e	C21orf33|ES1	DNA segment, Chr 10, Johns Hopkins University 81 expressed	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-73806552-2	chr13	73806452	73806652	+	927.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360694, intron 20 of 24)	intron (NM_001360694, intron 20 of 24)	41079.0	NM_028186	72293.0	Mm.45506	NM_028186	ENSMUSG00000021567	Nkd2	2210403L10Rik|AW212591|mNkd2	naked cuticle 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-32966883-2	chr17	32966783	32966983	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153063, intron 1 of 3)	RMER21A|LTR|ERV1	1052.0	NM_153063	224691.0	Mm.328953	NM_153063	ENSMUSG00000053600	Zfp472	KRIM-1|Krim-1A|Krim-1B|Krim1	zinc finger protein 472	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91885213-2	chr16	91885124	91885324	+	881.349976	f0_balb.idr|f1_balb.idr	intron (NM_010587, intron 28 of 38)	intron (NM_010587, intron 28 of 38)	46406.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	1.31544725652141	1.18891623411526	1.15307876173856	2.31610009306237	2.39109039792294	3.09975007881228	2.77979189677561	1.79724261065839	2.35811343316949	0.0233285653803117	0.199261599976018
Merged-chr9-89974785-3	chr9	89974688	89974888	+	877.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011245, exon 9 of 27)	exon (NM_011245, exon 9 of 27)	65013.0	NM_001357743	19417.0	Mm.44561	NM_011245	ENSMUSG00000032356	Rasgrf1	AI844718|CDC25|CDC25Mm|Gnrp|Grf1|Grfbeta|P190-A|Ras-GRF1|p190|p190RhoGEF	RAS protein-specific guanine nucleotide-releasing factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-32983475-4	chr4	32983416	32983616	+	957.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027491, exon 1 of 7)	exon (NM_027491, exon 1 of 7)	518.0	NM_027491	52187.0	Mm.300814	NM_027491	ENSMUSG00000028278	Rragd	5730543C08Rik|AI467523|C030003H22Rik|D4Ertd174e	Ras-related GTP binding D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-82022845-4	chr11	82022722	82022922	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12755.0	NM_011333	20296.0	Mm.290320	NM_011333	ENSMUSG00000035385	Ccl2	AI323594|HC11|JE|MCAF|MCP-1|MCP1|SMC-CF|Scya2|Sigje	chemokine (C-C motif) ligand 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-83853985-4	chr18	83853886	83854086	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	232576.0	NM_001081300	110796.0	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-23042399-2	chr2	23042299	23042499	+	677.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-2158.0	NM_145994	11308.0	Mm.205647	NM_007380	ENSMUSG00000058835	Abi1	E3B1|NAP1|Ssh3bp1|abi-1	abl-interactor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-38509200-3	chr2	38509104	38509304	+	811.266663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2493.0	NM_021606	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-29745453-2	chr2	29745353	29745553	+	661.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16075.0	NM_001177392	433416.0	Mm.330112	NM_001034887	ENSMUSG00000075425	Gm13547	-	predicted gene 13547	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-93624877-4	chr2	93624769	93624969	+	909.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17565.0	NM_007442	11695.0	Mm.389389	NM_007442	ENSMUSG00000040310	Alx4	lst	aristaless-like homeobox 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-89741221-4	chr10	89741122	89741322	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3769.0	NM_029166	75089.0	Mm.268922	NM_029166	ENSMUSG00000019951	Uhrf1bp1l	2010319N22Rik|4930506D01Rik|AA589495|C80672|E030041M21Rik|mKIAA0701	UHRF1 (ICBP90) binding protein 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-95512031-4	chr9	95511939	95512139	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001114977)	promoter-TSS (NM_001114977)	-43.0	NM_001357974	67958.0	Mm.292742	NM_026476	ENSMUSG00000032407	U2surp	2610101N10Rik|AU023006|Sr140	U2 snRNP-associated SURP domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-57231823-2	chr12	57231723	57231923	+	864.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164370, intron 1 of 9)	MTD|LTR|ERVL-MaLR	1398.0	NM_001164370	73490.0	Mm.268180	NM_001164370	ENSMUSG00000047022	Mipol1	1700081O04Rik|6030439O22Rik|AU021838|AW536152|D12Ertd19e	mirror-image polydactyly 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-99902681-4	chr12	99902547	99902747	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028354, intron 6 of 15)	intron (NM_028354, intron 6 of 15)	18132.0	NM_028354	104884.0	Mm.312323	NM_028354	ENSMUSG00000021177	Tdp1	2810481F14Rik|4921509N21Rik|AI838772|AW493413|E430034L06Rik|MLZ-501|SCAN1	tyrosyl-DNA phosphodiesterase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-51647916-1	chr13	51647816	51648016	+	542.0	f1_balb.idr	intron (NM_025415, intron 1 of 2)	intron (NM_025415, intron 1 of 2)	2684.0	NM_025415	66197.0	Mm.222228	NM_025415	ENSMUSG00000062248	Cks2	1110038L14Rik|CKSHS2	CDC28 protein kinase regulatory subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-142473450-2	chr3	142473350	142473550	+	547.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TGAA)n|Simple_repeat|Simple_repeat	-23484.0	NM_153564	229898.0	Mm.459245	NM_153564	ENSMUSG00000105504	Gbp5	5330409J06Rik|Gbp5a	guanylate binding protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47773698-2	chr17	47773598	47773798	+	672.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161723, intron 1 of 8)	intron (NM_001161723, intron 1 of 8)	-12046.0	NM_011549	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-101827116-4	chr5	101827004	101827204	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61974.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85385045-3	chr12	85384943	85385143	+	826.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10326.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-99026310-3	chr6	99026207	99026407	+	754.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001197321, intron 4 of 17)	intron (NM_001197321, intron 4 of 17)	1991.0	NM_001197322	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-70785518-2	chr9	70785418	70785618	+	759.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	106536.0	NM_007399	11487.0	Mm.3037	NM_007399	ENSMUSG00000054693	Adam10	1700031C13Rik|MADM|kuz|kuzbanian	a disintegrin and metallopeptidase domain 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-73076995-2	chr15	73076895	73077095	+	571.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13417.0	NM_053068	93696.0	Mm.23095	NM_053068	ENSMUSG00000068391	Chrac1	2410152E03Rik|2810406L04Rik|YCL1	chromatin accessibility complex 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-47670791-1	chr8	47670691	47670891	+	544.0	f0_balb.idr	intron (NM_023503, intron 1 of 1)	intron (NM_023503, intron 1 of 1)	4368.0	NM_023503	69260.0	Mm.430733	NM_023503	ENSMUSG00000063049	Ing2	2810011M06Rik|Ing1l|Ing2b|P33ING2	inhibitor of growth family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-62576106-4	chr17	62576017	62576217	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	305200.0	NM_207654	13640.0	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-53349112-4	chr15	53349005	53349205	+	865.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA8|LINE|L1	-2922.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-114315287-3	chr5	114315207	114315407	+	815.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164573, intron 1 of 30)	MLT1K|LTR|ERVL-MaLR	366.0	NM_001164573	231646.0	Mm.238285	NM_146163	ENSMUSG00000066952	Myo1h	4631401O15Rik	myosin 1H	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-44118028-3	chr19	44117925	44118125	+	818.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081077, intron 10 of 13)	intron (NM_001081077, intron 10 of 13)	-10548.0	NM_001162410	12675.0	Mm.3996	NM_007700	ENSMUSG00000025199	Chuk	AI256658|Chuk1|Fbx24|Fbxo24|IKBKA|IKK alpha|IKK1|Ikka|NFKBIKA	conserved helix-loop-helix ubiquitous kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-36083103-4	chr19	36082997	36083197	+	905.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019428)	promoter-TSS (NM_019428)	-619.0	NM_019428	54364.0	Mm.277891	NM_019428	ENSMUSG00000024800	Rpp30	Rnasep2|TSG15	ribonuclease P/MRP 30 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-39232871-4	chr6	39232774	39232974	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26101.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-102700986-4	chr13	102700887	102701087	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360519, intron 1 of 2)	intron (NM_001360519, intron 1 of 2)	7429.0	NM_008533	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-60208659-2	chr11	60208559	60208759	+	830.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358315, intron 1 of 18)	intron (NM_001358315, intron 1 of 18)	1812.0	NM_001358314	20787.0	Mm.278701	NM_011480	ENSMUSG00000020538	Srebf1	ADD1|SREBP1|bHLHd1	sterol regulatory element binding transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167981923-2	chr2	167981823	167982023	+	729.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080708, intron 20 of 21)	intron (NM_001080708, intron 20 of 21)	28670.0	NM_001080708	69553.0	Mm.68454	NM_001080708	ENSMUSG00000074577	Ripor3	2310033K02Rik|Fam65c|Gm124	RIPOR family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81596570-2	chr10	81596470	81596670	+	688.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_053254, intron 4 of 13)	intron (NM_053254, intron 4 of 13)	797.0	NM_001359135	114606.0	Mm.206764	NM_053254	ENSMUSG00000034758	Tle6	1810057E06Rik|Grg6	transducin-like enhancer of split 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25686935-4	chr7	25686905	25687105	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011577)	promoter-TSS (NM_011577)	3.0	NM_011577	21803.0	Mm.248380	NM_011577	ENSMUSG00000002603	Tgfb1	TGF-beta1|TGFbeta1|Tgfb|Tgfb-1	transforming growth factor, beta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-7430486-4	chr17	7430383	7430583	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45178.0	NM_001142539	667055.0	Mm.327371	NM_001142539	ENSMUSG00000056133	Gm9992	-	predicted gene 9992	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-63138104-2	chr11	63138004	63138204	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001302255, intron 3 of 4)	intron (NM_001302255, intron 3 of 4)	5301.0	NM_001302260	18858.0	Mm.1237	NM_008885	ENSMUSG00000018217	Pmp22	22kDa|Gas-3|HNPP|TRE002|Tr|trembler	peripheral myelin protein 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-37233000-5	chr10	37232858	37233058	+	792.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-94032.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-118813213-3	chr14	118813116	118813316	+	643.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160097, intron 1 of 3)	intron (NM_001160097, intron 1 of 3)	25345.0	NM_001160097	58187.0	Mm.390755	NM_021386	ENSMUSG00000022132	Cldn10	6720456I16Rik|Cldn10a|Cldn10b|D14Ertd728e	claudin 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-152189469-2	chr3	152189369	152189569	+	907.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356364, intron 1 of 2)	intron (NM_001356364, intron 1 of 2)	4376.0	NM_025926	67035.0	Mm.46746	NM_025926	ENSMUSG00000028035	Dnajb4	1700029A20Rik|2010306G19Rik|5730460G06Rik	DnaJ heat shock protein family (Hsp40) member B4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135920659-4	chr4	135920573	135920773	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024243)	promoter-TSS (NM_024243)	-53.0	NM_024243	71665.0	Mm.439940	NM_024243	ENSMUSG00000028673	Fuca1	0610006A03Rik|9530055J05Rik|Afuc|Fuca	fucosidase, alpha-L- 1, tissue	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-31413113-3	chr15	31413023	31413223	+	821.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	40566.0	NM_145852	252967.0	Mm.436668	NM_145852	ENSMUSG00000022236	Ropn1l	ASP|AV047578|Akapasp	ropporin 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-30391701-2	chr5	30391601	30391801	+	926.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001100395, intron 12 of 46)	intron (NM_001100395, intron 12 of 46)	50038.0	NM_001033460	381738.0	Mm.389604	NM_001033460	ENSMUSG00000073102	Drc1	Ccdc164|Gm1060|b2b1654Clo	dynein regulatory complex subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-63826112-2	chr5	63825998	63826198	+	830.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_029554, intron 1 of 3)	intron (NM_029554, intron 1 of 3)	13603.0	NM_029554	76261.0	Mm.38143	NM_029554	ENSMUSG00000060512	0610040J01Rik	AI662686	RIKEN cDNA 0610040J01 gene	protein-coding	2.11663686276267	2.99329565267174	3.63467555229072	3.01035916447553	2.13619785892447	3.01601164796805	3.9365210440165	3.02623799219941	0.235699087200387	0.744520064369359	0.998431161219273
Merged-chr6-131244688-4	chr6	131244580	131244780	+	980.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008462, intron 2 of 7)	intron (NM_008462, intron 2 of 7)	2682.0	NM_001170851	16633.0	Mm.4783	NM_008462	ENSMUSG00000030187	Klra2	Klra30|Ly49b	killer cell lectin-like receptor, subfamily A, member 2	protein-coding	3.32847296064547	2.07444668859397	3.959483478677	1.41605435950382	3.29750900754741	2.09155739535046	3.3669483671249	2.46337437721409	-0.250228009949843	0.771474972483914	0.998431161219273
Merged-chr3-8957031-4	chr3	8956934	8957134	+	997.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	7112.0	NM_001025262	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-127786445-2	chr3	127786383	127786583	+	762.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1-int|LTR|ERVL-MaLR	-3389.0	NM_145133	211550.0	Mm.31852	NM_145133	ENSMUSG00000046688	Tifa	T2bp	TRAF-interacting protein with forkhead-associated domain	protein-coding	0.835335926179704	0.298956573793173	0.292424982034131	0.287385130014321	0.758485983572784	0.657488912764386	0.866801615720053	0.288265632842353	1.27454131312989	0.506968540995858	1
Merged-chr8-23038649-4	chr8	23038666	23038866	+	894.3583369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001277284, intron 1 of 42)	intron (NM_001277284, intron 1 of 42)	3667.0	NM_001277284	11733.0	Mm.334444	NM_031158	ENSMUSG00000031543	Ank1	Ank-1|nb|pale	ankyrin 1, erythroid	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-111725527-4	chr13	111725457	111725657	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	39379.0	NM_172593	218613.0	Mm.31012	NM_172593	ENSMUSG00000032727	Mier3	5730509D14|AU015422|D130064H19Rik	MIER family member 3	protein-coding	6.56077577301728	7.00349435925265	6.53535695126078	6.01727891065219	6.34480179075725	6.55700687228935	6.05497892599341	5.81688140873147	-0.376302610670197	0.126046271976487	0.555889669429522
Merged-chr17-26237939-4	chr17	26237859	26238059	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001206335, intron 1 of 12)	intron (NM_001206335, intron 1 of 12)	6283.0	NM_207217	106581.0	Mm.28844	NM_207217	ENSMUSG00000024187	Fam234a	Itfg3	family with sequence similarity 234, member A	protein-coding	3.78188645694438	3.15238089911678	3.04398854279178	3.25520295987442	2.92723700230491	3.81251683253232	3.06844379405221	3.98728355818742	0.276856488807307	0.635785147296818	0.982417279970648
Merged-chr15-34046006-1	chr15	34045906	34046106	+	781.0	f1_c57bl6.idr	Intergenic	RLTR41|LTR|ERV1	-36713.0	NM_001357926	67154.0	Mm.130883	NM_026002	ENSMUSG00000022255	Mtdh	2610103J23Rik|3D3|3D3/Lyric|AEG-1|AV353288|D8Bwg1112e|Lyric	metadherin	protein-coding	0.93962006877679	1.7678077121081	0.856104879752559	1.25481095953166	0.947981626022414	0.664308458510281	1.1843108742825	0.641537872273358	-1.68160376053119	0.245906215344986	0.745297096255256
Merged-chr1-138963452-6	chr1	138963288	138963488	+	998.7222289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166501)	promoter-TSS (NM_001166501)	-321.0	NM_001166501	329260.0	Mm.337604	NM_181347	ENSMUSG00000056268	Dennd1b	4632404N19Rik|4930467M19Rik|6820401H01Rik|F730008N07Rik	DENN/MADD domain containing 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-118621511-2	chr4	118621411	118621611	+	598.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_026932, exon 3 of 9)	exon (NM_026932, exon 3 of 9)	712.0	NM_026932	69072.0	Mm.29906	NM_026932	ENSMUSG00000028729	Ebna1bp2	1810014B19Rik|AA537058|B830003A16Rik|C81321|Ebp2|Nobp|p40	EBNA1 binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-33059769-1	chr6	33059669	33059869	+	1000.0	f1_c57bl6.idr	intron (NM_001355667, intron 1 of 8)	intron (NM_001355667, intron 1 of 8)	491.0	NM_001355667	66075.0	Mm.21501	NM_025336	ENSMUSG00000053768	Chchd3	0610041L09Rik|1700039J09Rik|AW558177	coiled-coil-helix-coiled-coil-helix domain containing 3	protein-coding	-0.00676055551402877	-0.433591370339059	-0.436967047794996	-0.0449379094219478	-0.192396206464684	-0.432827629643745	-0.436224271758934	-0.439105843081642	-1.69768423109742	0.516966086543472	1
Merged-chr5-40085487-2	chr5	40085387	40085587	+	621.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3_Mus|LINE|L1	-440856.0	NM_010474	15476.0	Mm.12559	NM_010474	ENSMUSG00000051022	Hs3st1	3-Ost|D5Wsu110e|Hsg3ost	heparan sulfate (glucosamine) 3-O-sulfotransferase 1	protein-coding	-0.347638316758288	0.215592673143341	-0.336090791904654	-0.340409428290171	-0.346558152616424	0.58022229215366	-0.334861044118672	-0.339653061178351	1.06284233577743	0.678446770249533	1
Merged-chr11-105975250-2	chr11	105975150	105975350	+	757.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009598)	promoter-TSS (NM_009598)	42.0	NM_009598	11421.0	Mm.754	NM_009598	ENSMUSG00000020681	Ace	AW208573|CD143	angiotensin I converting enzyme (peptidyl-dipeptidase A) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-59187050-1	chr4	59186950	59187150	+	555.0	f1_c57bl6.idr	Intergenic	L1MC1|LINE|L1	-2500.0	NM_011673	22234.0	Mm.198803	NM_011673	ENSMUSG00000028381	Ugcg	AU043821|C80537|Epcs21|GlcT-1|Ugcgl	UDP-glucose ceramide glucosyltransferase	protein-coding	0.305638165161973	0.0434406313764321	0.830262541317243	0.032353887931492	0.707574439665918	0.0448454820203849	0.0385729173931595	0.033200386559225	-0.648679714342331	0.767249607472694	1
Merged-chr4-105703289-2	chr4	105703189	105703389	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-537924.0	NR_151521	105244641.0	Mm.404914	NR_151521		Gm12724	-	predicted gene 12724	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-158139644-2	chr2	158139544	158139744	+	783.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009373, intron 2 of 12)	intron (NM_009373, intron 2 of 12)	6748.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	-0.0520594035846317	-0.507539786449747	-0.511265653646284	-0.514135633058337	0.126383442287617	-0.506698995047892	-0.510444466537128	-0.513634547488846	0.613048320368843	0.827142336386976	1
Merged-chr7-75784045-2	chr7	75783945	75784145	+	806.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64293.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99710651-2	chr7	99710551	99710751	+	794.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175316, intron 1 of 13)	intron (NM_175316, intron 1 of 13)	689.0	NM_175316	101488.0	Mm.11249	NM_175316	ENSMUSG00000030737	Slco2b1	AI060904|AI852653|OATP-B|Slc21a9	solute carrier organic anion transporter family, member 2b1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126652832-4	chr7	126652716	126652916	+	895.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029339, intron 1 of 9)	intron (NM_029339, intron 1 of 9)	3507.0	NM_029339	75565.0	Mm.45686	NM_029339	ENSMUSG00000030714	Sgf29	1700023O11Rik|9530025I05Rik|Ccdc101	SAGA complex associated factor 29	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-84510450-2	chr17	84510350	84510550	+	600.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1445.0	NM_001357986	213556.0	Mm.215159	NM_177606	ENSMUSG00000040852	Plekhh2	AI256725|E030001K05|mKIAA2028	pleckstrin homology domain containing, family H (with MyTH4 domain) member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26937583-2	chr17	26937483	26937683	+	996.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_026307)	TTS (NM_026307)	1875.0	NR_104458	67675.0	Mm.439919	NM_026307	ENSMUSG00000024194	Cuta	0610039D01Rik|1810022E02Rik|1810060C03Rik|2700094G22Rik|AI326454	cutA divalent cation tolerance homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-132844192-2	chr2	132844092	132844292	+	849.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_025676)	TTS (NM_025676)	-2474.0	NM_001024385	66586.0	Mm.357342	NM_025646	ENSMUSG00000027357	Crls1	0610009I22Rik|4930557M15Rik|5730490M08Rik	cardiolipin synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-80208560-2	chr11	80208460	80208660	+	718.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021536)	promoter-TSS (NM_021536)	-495.0	NM_001163354	59040.0	Mm.489674	NM_021536	ENSMUSG00000017686	Rhot1	2210403N23Rik|AA415293|AF244542|AI834919|Arht1|C430039G08Rik|Miro1	ras homolog family member T1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-91250222-4	chr1	91250113	91250313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355761)	promoter-TSS (NM_001355761)	-91.0	NM_001355763	67921.0	Mm.337238	NM_026454	ENSMUSG00000034343	Ube2f	2510010F15Rik|AI851109	ubiquitin-conjugating enzyme E2F (putative)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-33780719-4	chr17	33780614	33780814	+	946.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020581, intron 2 of 6)	intron (NM_020581, intron 2 of 6)	861.0	NM_020581	57875.0	Mm.196189	NM_020581	ENSMUSG00000002289	Angptl4	Arp4|Bk89|Fiaf|Hfarp|Ng27|Pgar|Pgarg|Pp1158	angiopoietin-like 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-49062207-2	chr11	49062107	49062307	+	656.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145164, intron 1 of 1)	Lx2B2|LINE|L1	2005.0	NM_001145164	100039796.0	Mm.482363	NM_001145164	ENSMUSG00000078921	Tgtp2	TGTP	T cell specific GTPase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-13866508-1	chr3	13866408	13866608	+	560.0	f0_balb.idr	intron (NM_001357034, intron 2 of 7)	intron (NM_001357034, intron 2 of 7)	-79797.0	NM_001163329	76897.0	Mm.422625	NM_178631	ENSMUSG00000039717	Ralyl	0710005M24Rik	RALY RNA binding protein-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101328426-2	chr15	101328326	101328526	+	581.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35214.0	NR_033803	77717.0	Mm.391998	NR_033803	ENSMUSG00000075408	6030408B16Rik	AI225877	RIKEN cDNA 6030408B16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-57521666-3	chr9	57521577	57521777	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007747, intron 1 of 4)	CpG	445.0	NM_007747	12858.0	Mm.273403	NM_007747	ENSMUSG00000000088	Cox5a	AA959768|CcOX	cytochrome c oxidase subunit Va	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-114621710-2	chr5	114621610	114621810	+	694.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_022017)	TTS (NM_022017)	36711.0	NM_022017	63873.0	Mm.266450	NM_022017	ENSMUSG00000014158	Trpv4	0610033B08Rik|OTRPC4|Trp12|VR-OAC|VRL-2|VROAC	transient receptor potential cation channel, subfamily V, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129614973-1	chr2	129614873	129615073	+	619.5	f0_balb.idr	intron (NM_001177647, intron 2 of 5)	intron (NM_001177647, intron 2 of 5)	19511.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	-0.350719625586265	-0.693131700818991	-0.529691483253344	-0.298168879067504	-0.701412568940992	-0.692473653895161	-0.695400645758432	-0.697884567920133	-3.0860144088951	0.254220404905753	1
Merged-chr2-167097080-1	chr2	167096980	167097180	+	544.0	f1_balb.idr	3' UTR (NM_008420, exon 2 of 2)	3' UTR (NM_008420, exon 2 of 2)	31787.0	NR_028540	100217443.0		NR_028540		Snord12	MBII-99	small nucleolar RNA, C/D box 12	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-121747166-4	chr11	121747067	121747267	+	994.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44740.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-100860162-2	chr13	100860062	100860262	+	636.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-26735.0	NM_022885	69048.0	Mm.402215	NM_022885	ENSMUSG00000021629	Slc30a5	1810010K08Rik|AF233321|ZNT5|ZTL1|ZnT-5|Zntl1	solute carrier family 30 (zinc transporter), member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-84624876-2	chr12	84624776	84624976	+	573.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7410.0	NM_008992	19300.0	Mm.229109	NM_008992	ENSMUSG00000021240	Abcd4	P69r|P70R|Pxmp1l	ATP-binding cassette, sub-family D (ALD), member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-120069351-2	chr1	120069251	120069451	+	563.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019432, intron 1 of 1)	intron (NM_019432, intron 1 of 1)	4429.0	NM_019432	170706.0	Mm.24750	NM_019432	ENSMUSG00000050777	Tmem37	AI173373|AW540203|Pr|Pr1	transmembrane protein 37	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-182506746-3	chr1	182506653	182506853	+	920.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009794, intron 2 of 20)	intron (NM_009794, intron 2 of 20)	10857.0	NM_009794	12334.0	Mm.19306	NM_009794	ENSMUSG00000026509	Capn2	AI326419|CALP80|Capa-2|Capa2|m-calpain|m-calpin	calpain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-102948297-2	chr2	102948197	102948397	+	635.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46632.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117158525-4	chr8	117158424	117158624	+	961.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081151, intron 1 of 10)	CpG	389.0	NM_001081151	209239.0	Mm.132992	NM_001081151	ENSMUSG00000052557	Gan	A330045G18|gigaxonin	giant axonal neuropathy	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-58529483-4	chr10	58529363	58529563	+	970.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162956, intron 10 of 15)	MTD|LTR|ERVL-MaLR	31526.0	NM_001162956	76138.0	Mm.211744	NM_001162956	ENSMUSG00000038010	Ccdc138	6230424H07Rik|BC042726	coiled-coil domain containing 138	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-123933342-2	chr9	123933242	123933442	+	570.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35350.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-116456002-4	chr6	116455927	116456127	+	888.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009662, intron 1 of 13)	intron (NM_009662, intron 1 of 13)	5151.0	NM_009662	11689.0	Mm.41072	NM_009662	ENSMUSG00000025701	Alox5	5-LO|5-LOX|5LO|5LX|AI850497|F730011J02	arachidonate 5-lipoxygenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-155566146-2	chr4	155566046	155566246	+	639.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355599, intron 1 of 10)	B3|SINE|B2	2331.0	NM_001355599	192185.0	Mm.28347	NM_138671	ENSMUSG00000029063	Nadk	4432404C02Rik|BC004012	NAD kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-121396925-2	chr5	121396788	121396988	+	739.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA6|LINE|L1	-1094.0	NM_172722	231713.0	Mm.33919	NM_172722	ENSMUSG00000042719	Naa25	4833422K13Rik|A630046C11|AI450868|C330023M02Rik|Mdm20	N(alpha)-acetyltransferase 25, NatB auxiliary subunit	protein-coding	0.3174999133364	0.378240769222218	0.203107673741638	0.199568807431127	0.534062934109683	0.761045841537811	0.617512832823579	0.200184941983464	2.45195738595404	0.207198920302216	1
Merged-chr10-81230712-2	chr10	81230612	81230812	+	545.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178662)	promoter-TSS (NM_178662)	67.0	NM_178662	16467.0	Mm.127681	NM_178662	ENSMUSG00000034958	Atcay	3322401A10Rik|BB077577|BNIP-H|CLAC|hes|ji	ataxia, cerebellar, Cayman type	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180975711-2	chr1	180975611	180975811	+	725.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_144794)	TTS (NM_144794)	33193.0	NM_144794	208795.0	Mm.185518	NM_144794	ENSMUSG00000026519	Tmem63a	BC014795|Tmem64a	transmembrane protein 63a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-74338698-4	chr17	74338562	74338762	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162870)	promoter-TSS (NM_001162870)	-325.0	NM_001357738	50850.0	Mm.19804	NM_016962	ENSMUSG00000024068	Spast	Spg4|mKIAA1083	spastin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-34565356-2	chr19	34565266	34565466	+	795.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355262, intron 1 of 2)	(TC)n|Simple_repeat|Simple_repeat	14278.0	NM_001355262	15958.0	Mm.2036	NM_008332	ENSMUSG00000045932	Ifit2	AV302338|Ifi54|P54	interferon-induced protein with tetratricopeptide repeats 2	protein-coding	0.712232353824689	1.66050106194009	1.38113635968748	1.07790646817572	1.03091861654492	0.753464216518369	0.947620393749235	1.54855763478862	-0.592552113278323	0.67517457413433	0.99440487726309
Merged-chr10-113506285-2	chr10	113506185	113506385	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19C|LTR|ERVK	-577259.0	NM_001033474	382423.0	Mm.431239	NM_001033474	ENSMUSG00000074748	Atxn7l3b	4921506J03Rik|6230409E21Rik|AI315132	ataxin 7-like 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-170317983-2	chr2	170317883	170318083	+	699.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38378.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-74159703-4	chr17	74159616	74159816	+	921.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-111800.0	NM_053188	94224.0	Mm.38933	NM_053188	ENSMUSG00000038541	Srd5a2	5ART2|S5AR 2	steroid 5 alpha-reductase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-6501045-4	chr15	6500970	6501170	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55737.0	NM_013485	12279.0	Mm.29095	NM_013485	ENSMUSG00000022149	C9	-	complement component 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-34867432-4	chr1	34867349	34867549	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145516, intron 6 of 7)	intron (NM_145516, intron 6 of 7)	17460.0	NM_001357425	226971.0	Mm.292751	NM_145516	ENSMUSG00000026123	Plekhb2	2310009M15Rik|AU018239|Evt2|Phdc|evt-2	pleckstrin homology domain containing, family B (evectins) member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-52004242-4	chr14	52004125	52004325	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198249, intron 21 of 23)	intron (NM_198249, intron 21 of 23)	10333.0	NM_001253695	69890.0	Mm.475652	NM_027248	ENSMUSG00000049295	Zfp219	2010302A17Rik|Znf219	zinc finger protein 219	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-32822739-2	chr12	32822639	32822839	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021524, intron 1 of 10)	intron (NM_021524, intron 1 of 10)	-1377.0	NR_045032	100504486.0	Mm.440246	NR_045032		Gdap10	Gdap-ps	ganglioside-induced differentiation-associated-protein 10	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19716508-1	chr7	19716408	19716608	+	640.666687	f0_c57.idr	TTS (NM_008990)	TTS (NM_008990)	-1079.0	NM_016871	53333.0	Mm.61682	NM_016871	ENSMUSG00000002984	Tomm40	AW539759|Mom35|Tom40	translocase of outer mitochondrial membrane 40	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-148920530-1	chr1	148920430	148920630	+	1000.0	f0_balb.idr	Intergenic	Intergenic	1001909.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-29049253-4	chr17	29049158	29049358	+	790.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16598.0	NR_036613	20383.0	Mm.6787	NM_013663	ENSMUSG00000071172	Srsf3	AL024116|Sfrs3|X16	serine/arginine-rich splicing factor 3	protein-coding	2.57109150594951	2.42691999968641	1.59932637342688	2.1714250979073	2.52226314051395	2.03916411434221	1.80752357174959	2.18226214984821	-0.189593780364447	0.832785387712905	0.998431161219273
Merged-chr17-12858183-2	chr17	12858083	12858283	+	639.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008552, intron 3 of 8)	B3|SINE|B2	9960.0	NM_008552	17171.0	Mm.425994	NM_008552	ENSMUSG00000068037	Mas1	Mas-1|MasR|Mgra	MAS1 oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71294202-4	chr8	71294085	71294285	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142322, intron 2 of 39)	intron (NM_001142322, intron 2 of 39)	21471.0	NM_001142323	17925.0	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	4.18589167012828	4.03362691909201	4.04620711169106	4.1862879660983	4.94120414391513	4.69272303055201	4.77639867313801	4.80019722178463	0.881656270520743	0.0164141900841994	0.154662920913789
Merged-chr4-141872247-4	chr4	141872138	141872338	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025994, intron 1 of 3)	intron (NM_025994, intron 1 of 3)	2682.0	NM_025994	27984.0	Mm.395598	NM_025994	ENSMUSG00000040659	Efhd2	2600015J22Rik|AA408606|D4Wsu27e	EF hand domain containing 2	protein-coding	5.02068160481357	4.99310234746343	4.15399640795909	3.33747497749521	5.13582015243451	4.18373509113899	5.70831352080019	5.18819628083792	0.749443443341977	0.0915859412614399	0.468126153048036
Merged-chr11-85170240-4	chr11	85170139	85170339	+	910.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028589)	promoter-TSS (NM_028589)	-857.0	NM_028589	73634.0	Mm.48850	NM_028589	ENSMUSG00000018479	1700125H20Rik	-	RIKEN cDNA 1700125H20 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-52765405-4	chr1	52765311	52765511	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38053.0	NM_001357464	98682.0	Mm.491173	NM_133829	ENSMUSG00000041439	Mfsd6	2210010L05Rik|9630025I22Rik|AI836200|AW212394|MMR2	major facilitator superfamily domain containing 6	protein-coding	2.14493352358496	1.48002173276704	2.90032645159068	1.66283709517499	3.80325545432339	3.83312914409027	3.81955946952084	2.29700394796541	2.44466871448093	0.00186044585710157	0.0317068599339554
Merged-chr4-56757466-4	chr4	56757374	56757574	+	962.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026079, intron 34 of 36)	intron (NM_026079, intron 34 of 36)	14052.0	NM_009611	11470.0	Mm.30959	NM_009611	ENSMUSG00000070979	Actl7a	Tact2	actin-like 7a	protein-coding	6.41297995009256	6.41797867762037	6.63145469087575	5.91489347524988	3.81107669927959	3.98818797928526	1.9359407355757	2.88422855171831	-3.58423060521055	2.08168141789643e-07	1.67250091419116e-05
Merged-chr2-146385813-1	chr2	146385713	146385913	+	567.0	f0_balb.idr	intron (NM_001033348, intron 24 of 40)	intron (NM_001033348, intron 24 of 40)	126191.0	NM_001033348	241694.0	Mm.222310	NM_001033348	ENSMUSG00000037110	Ralgapa2	A230067G21Rik|AS250|BC053994|RGC2|pp250	Ral GTPase activating protein, alpha subunit 2 (catalytic)	protein-coding	-0.0388115986143984	-0.193418125046285	-0.200619216078862	-0.206246477326944	0.117721196358189	-0.191808872687661	1.04130161891389	-0.205258803014441	3.37982881891791	0.127894259145442	1
Merged-chr15-79351720-2	chr15	79351579	79351779	+	753.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001304832, intron 1 of 2)	intron (NM_001304832, intron 1 of 2)	3277.0	NM_001304832	17133.0	Mm.86646	NM_010755	ENSMUSG00000042622	Maff	-	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein F (avian)	protein-coding	-0.0767003743540003	-0.0586475128826489	0.637308367191717	0.682311745006802	-0.0755662675315604	-0.0573236051847663	0.128102547692546	-0.068297853386372	-3.15979838359875	0.162038420720915	1
Merged-chr17-23807138-2	chr17	23807038	23807238	+	975.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_175229, intron 1 of 13)	CpG	3951.0	NM_175229	75956.0	Mm.5222	NM_175229	ENSMUSG00000039218	Srrm2	5033413A03Rik|AA410130|SRm300|mKIAA0324	serine/arginine repetitive matrix 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-103836369-2	chr5	103836269	103836469	+	739.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133919, intron 11 of 19)	RMER10A|LTR|ERVL	74890.0	NM_001359987	246293.0	Mm.179871	NM_178741	ENSMUSG00000029312	Klhl8	2310001P09Rik|D5Ertd431e	kelch-like 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-88718833-2	chr10	88718733	88718933	+	783.3000490000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C|LTR|ERVK	12268.0	NM_001037166	237433.0	Mm.478763	NM_001037166		Gm4925	EG237433	predicted gene 4925	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-15609226-2	chr14	15609126	15609326	+	562.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-170239.0	NM_146052	218763.0	Mm.138039	NM_146052	ENSMUSG00000045201	Lrrc3b	BC019794|LRP15	leucine rich repeat containing 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44903959-2	chr7	44903859	44904059	+	569.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077264, intron 14 of 22)	intron (NM_001077264, intron 14 of 22)	7880.0	NM_027376	70300.0	Mm.276298	NM_027376	ENSMUSG00000011658	Fuz	2600013E07Rik|b2b1273Clo	fuzzy planar cell polarity protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94147011-2	chr10	94146844	94147044	+	679.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011629)	promoter-TSS (NM_011629)	-987.0	NM_011629	22025.0	Mm.107483	NM_011629	ENSMUSG00000005897	Nr2c1	4831444H07Rik|80.3|Eenr|TR2|Tr2-11	nuclear receptor subfamily 2, group C, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-105803600-2	chr9	105803511	105803711	+	772.0	f0_balb.idr|f1_balb.idr	intron (NM_001102607, intron 1 of 36)	ORR1E|LTR|ERVL-MaLR	6037.0	NM_172927	245026.0	Mm.482507	NM_172927	ENSMUSG00000043719	Col6a6	E330019B14|E330026B02Rik	collagen, type VI, alpha 6	protein-coding	-1.24900173669778	-1.22209922953844	-1.23260730456294	-1.24123895025716	-0.973140129410997	-0.88914210142926	-1.23022850670784	-1.23969388980479	2.48739720405528	0.449861323143152	1
Merged-chr6-72132982-1	chr6	72132882	72133082	+	565.0	f0_balb.idr	intron (NM_001035228, intron 3 of 6)	intron (NM_001035228, intron 3 of 6)	-9785.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27650332-4	chr17	27650245	27650445	+	847.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5246.0	NM_011861	23969.0	Mm.4926	NM_011861	ENSMUSG00000040276	Pacsin1	A830061D09Rik|H74|mKIAA1379|syndapin	protein kinase C and casein kinase substrate in neurons 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-63605620-2	chr9	63605520	63605720	+	804.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_151671, intron 1 of 9)	intron (NR_151671, intron 1 of 9)	2974.0	NR_151671	66939.0	Mm.34338	NM_025857	ENSMUSG00000037257	Aagab	2310007F21Rik|p34	alpha- and gamma-adaptin binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119927806-2	chr11	119927706	119927906	+	841.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_039557, intron 2 of 2)	B1_Mus2|SINE|Alu	13996.0	NM_001085498	208092.0	Mm.306673	NM_001085498	ENSMUSG00000025371	Chmp6	2400004G01Rik	charged multivesicular body protein 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-116424028-4	chr3	116423965	116424165	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080818)	promoter-TSS (NM_001080818)	-33.0	NM_001173553	229776.0	Mm.17647	NM_001080818	ENSMUSG00000033502	Cdc14a	A830059A17Rik|CDC14A2|CDC14a1|Cdc14	CDC14 cell division cycle 14A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-38563052-1	chr5	38562952	38563152	+	614.0	f1_c57bl6.idr	Intergenic	RMER17C|LTR|ERVK	-1457.0	NM_011715	22388.0	Mm.2654	NM_011715	ENSMUSG00000005103	Wdr1	Aip1|D5Wsu185e|rede	WD repeat domain 1	protein-coding	-0.0470602398865418	0.446407019037711	-0.0369284074117882	0.570558144123514	0.217495808891913	-0.030860308706835	-0.0358372886908314	0.121346335619624	-1.61339290743683	0.456749715760016	1
Merged-chr11-69672502-4	chr11	69672411	69672611	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144958)	promoter-TSS (NM_144958)	-88.0	NM_001159375	13681.0	Mm.26680	NM_144958	ENSMUSG00000059796	Eif4a1	BM-010|Ddx2a|Eif4	eukaryotic translation initiation factor 4A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-17648943-4	chr17	17648825	17649025	+	914.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24436.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-106894326-2	chr8	106894226	106894426	+	545.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145412)	promoter-TSS (NM_145412)	686.0	NM_001358982	21771.0	Mm.10665	NM_011574	ENSMUSG00000041438	Utp4	Cirh1a|Cirhin|Naic|Teg-292|Tex292	UTP4 small subunit processome component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-90113121-4	chr9	90113049	90113249	+	923.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039147, intron 1 of 12)	intron (NM_001039147, intron 1 of 12)	1671.0	NM_001039147	21761.0	Mm.426209	NM_024431	ENSMUSG00000062270	Morf4l1	MORFRG15|MRG15|TEG-189|Tex189|mKIAA4002	mortality factor 4 like 1	protein-coding	1.11364110041017	0.809874485911299	1.24111565467243	0.554037179736135	0.876647497149818	0.57944727443224	1.8169370491865	0.55578438760722	0.531282158969361	0.734406654585633	0.998431161219273
Merged-chr7-30323158-4	chr7	30323060	30323260	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033140)	promoter-TSS (NM_001033140)	-785.0	NM_001033140	68332.0	Mm.6844	NM_001033140	ENSMUSG00000074211	Sdhaf1	0610010E21Rik|AI430885|AW490662|Lyrm8	succinate dehydrogenase complex assembly factor 1	protein-coding	5.48834292875904	6.08964296643951	6.14735365515568	5.37229052581703	7.07105575688862	6.74792157010421	6.88577756938656	6.15994602804258	1.02753605469451	6.41087632178718e-05	0.00215254740976127
Merged-chr4-147906437-2	chr4	147906337	147906537	+	732.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1528.0	NM_001285921	170731.0	Mm.154312	NM_133201	ENSMUSG00000029020	Mfn2	D630023P19Rik|Fzo	mitofusin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-93819331-1	chr1	93819231	93819431	+	556.0	f1_c57bl6.idr	3' UTR (NM_025454, exon 8 of 8)	3' UTR (NM_025454, exon 8 of 8)	-5909.0	NM_178882	98314.0	Mm.383401	NM_178882	ENSMUSG00000073609	D2hgdh	AA408776|AA408778|AI325464	D-2-hydroxyglutarate dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-103234378-1	chr14	103234278	103234478	+	744.0	f0_balb.idr	intron (NM_207215, intron 26 of 84)	L2a|LINE|L2	112422.0	NM_207215	105689.0	Mm.6478	NM_207215	ENSMUSG00000033004	Mycbp2	AU023734|AW107953|AW546647|C130061D10Rik|Pam|Phr1|R75243	MYC binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-105073190-1	chr9	105073090	105073290	+	1000.0	f0_balb.idr	intron (NM_053159, intron 7 of 9)	L1MC4|LINE|L1	19922.0	NM_053159	94062.0	Mm.29746	NM_053159	ENSMUSG00000032563	Mrpl3	2010320L16Rik|5930422H18Rik|AA407889	mitochondrial ribosomal protein L3	protein-coding	-0.865326703316383	-0.849971874135937	0.280665258210813	-0.858864759381203	-0.86435674098481	-0.848731039658829	-0.853951331253819	-0.858192605091486	-3.66751939073779	0.204629335831286	1
Merged-chr1-131431630-4	chr1	131431526	131431726	+	775.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081011, intron 3 of 22)	intron (NM_001081011, intron 3 of 22)	95735.0	NM_001081011	14270.0	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	0.111197835373234	-0.187566193118728	-0.194553009190679	-0.200006547276883	-0.0303251568469718	-0.186003609505452	-0.193004213458304	1.02777306398762	2.65147186206249	0.242693981308766	1
Merged-chr14-60513802-1	chr14	60513702	60513902	+	613.0	f1_c57bl6.idr	Intergenic	Intergenic	-120903.0	NM_001033272	219140.0	Mm.149776	NM_001033272	ENSMUSG00000021990	Spata13	C79050|ESTM11|X83327|mFLJ00298	spermatogenesis associated 13	protein-coding	2.32843603452789	3.10771794520049	2.32518056663424	2.00262559050762	2.66038587475197	1.28434127316801	1.24983466882855	1.86065138461842	-1.30959226731422	0.19420714245386	0.674608365709731
Merged-chr12-91592316-4	chr12	91592203	91592403	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1816.0	NM_175335	83602.0	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-62127912-3	chr11	62127811	62128011	+	850.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029936, intron 2 of 12)	intron (NM_001029936, intron 2 of 12)	50887.0	NM_001029936	432572.0	Mm.438022	NM_001029936	ENSMUSG00000042331	Specc1	2810012G08Rik|B230396K10Rik|Cytsb	sperm antigen with calponin homology and coiled-coil domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-31034132-4	chr1	31034027	31034227	+	914.18335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_136907, intron 2 of 3)	intron (NR_136907, intron 2 of 3)	62327.0	NR_136907	102634473.0	Mm.484482	NR_136907	ENSMUSG00000100371	Gm29669	-	predicted gene 29669	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-115901257-4	chr6	115901141	115901341	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167763, intron 15 of 28)	intron (NM_001167763, intron 15 of 28)	-30686.0	NM_145383	212541.0	Mm.2965	NM_145383	ENSMUSG00000030324	Rho	Noerg1|Opn2|Ops|RP4	rhodopsin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-68691318-1	chr11	68691218	68691418	+	1000.0	f0_balb.idr	promoter-TSS (NM_175260)	promoter-TSS (NM_175260)	-597.0	NM_175260	77579.0	Mm.218233	NM_175260	ENSMUSG00000020900	Myh10	5730504C04Rik|9330167F11Rik|Fltn|Myhn-2|Myhn2|NMHC II-B|NMHC-B|NMHCII-B|NMMHC II-b|NMMHC-B|NMMHC-IIB|SMemb|mKIAA3005	myosin, heavy polypeptide 10, non-muscle	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-21639898-2	chr16	21639798	21639998	+	757.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081366, intron 45 of 46)	intron (NM_001081366, intron 45 of 46)	54767.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-3659698-3	chr2	3659580	3659780	+	637.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53778.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75052599-2	chr11	75052499	75052699	+	555.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001002764, intron 12 of 18)	intron (NM_001002764, intron 12 of 18)	13392.0	NR_030454	735274.0		NR_030454	ENSMUSG00000106252	Mir684-1	Mirn684-1	microRNA 684-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-53703212-4	chr9	53703121	53703321	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175562, intron 1 of 1)	PB1D10|SINE|Alu	3011.0	NM_175562	270160.0	Mm.290285	NM_175562	ENSMUSG00000055069	Rab39	C230094F14Rik|Rab39a	RAB39, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-36863686-2	chr14	36863586	36863786	+	596.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55849.0	NM_001347503	72972.0	Mm.27621	NM_027045	ENSMUSG00000058690	Ccser2	1700012P13Rik|2900054P12Rik|AI035535|AW108503|Fam190b|Gcap14	coiled-coil serine rich 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-81860759-4	chr7	81860649	81860849	+	965.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_111910, intron 1 of 7)	intron (NR_111910, intron 1 of 7)	1748.0	NM_145375	107769.0	Mm.221412	NM_145375	ENSMUSG00000038623	Tm6sf1	AI428514|BC023123|C630016D09Rik	transmembrane 6 superfamily member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-81150016-2	chr3	81149916	81150116	+	562.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357746, intron 3 of 6)	intron (NM_001357746, intron 3 of 6)	113600.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96661681-4	chr3	96661595	96661795	+	765.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302471, intron 27 of 29)	intron (NM_001302471, intron 27 of 29)	-8436.0	NM_001356539	213121.0	Mm.39732	NM_001081139	ENSMUSG00000038354	Ankrd35	4732436F15Rik	ankyrin repeat domain 35	protein-coding	0.670068002790885	0.619244631748658	0.425933250407593	0.7148394711774	0.967531348822094	0.918998389951012	0.748888844507663	0.421606423241148	1.06818003468738	0.514155253173896	1
Merged-chr7-46825182-3	chr7	46825066	46825266	+	714.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	-20638.0	NM_010699	16828.0	Mm.29324	NM_010699	ENSMUSG00000063229	Ldha	Ldh1|Ldhm|l7R2	lactate dehydrogenase A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-31634357-2	chr11	31634257	31634457	+	646.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37505.0	NM_001024919	69556.0	Mm.34183	NM_001024919	ENSMUSG00000044502	Bod1	2310022M17Rik|BOD2.1|Fam44b	biorientation of chromosomes in cell division 1	protein-coding	2.78267826991688	1.51316127076202	2.21121656441513	3.72541337178422	3.46131068920298	4.13566986098508	3.33714719678694	1.40969158229575	0.92478528847348	0.523406713021758	0.948187958023104
Merged-chr5-3224056-3	chr5	3223954	3224154	+	771.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-119839.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-59259322-2	chr4	59259222	59259422	+	777.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_105031)	promoter-TSS (NR_105031)	-729.0	NR_105031	101055769.0	Mm.421401	NR_105031		Gm12596	-	predicted gene 12596	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-120519369-2	chr5	120519269	120519469	+	639.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177595, intron 2 of 13)	RSINE1|SINE|B4	8177.0	NM_001177594	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-96519365-3	chr7	96519264	96519464	+	854.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310762, intron 4 of 32)	intron (NM_001310762, intron 4 of 32)	-177400.0	NR_046043	670727.0	Mm.421352	NR_046043	ENSMUSG00000085751	Gm15412	-	predicted gene 15412	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-91022990-2	chr1	91022890	91023090	+	773.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111312, intron 1 of 12)	intron (NM_001111312, intron 1 of 12)	24263.0	NM_001111312	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-74920838-4	chr15	74920753	74920953	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34198.0	NM_001164039	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-135741514-2	chr1	135741414	135741614	+	562.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_153810, intron 2 of 3)	intron (NR_153810, intron 2 of 3)	12347.0	NM_007791	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-38672136-2	chr15	38672036	38672236	+	851.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_025494, intron 1 of 12)	ID_B1|SINE|B4	10232.0	NM_025494	66335.0	Mm.276618	NM_025494	ENSMUSG00000022295	Atp6v1c1	1700025B18Rik|U13839	ATPase, H+ transporting, lysosomal V1 subunit C1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21958404-2	chr9	21958304	21958504	+	761.166687	f1_balb.idr|f1_c57bl6.idr	TTS (NM_010149)	TTS (NM_010149)	-2398.0	NR_132099	100049077.0	Mm.46647	NR_132099		Gm45914	-	predicted gene, 45914	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-34934125-2	chr18	34934025	34934225	+	655.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-2122.0	NM_144866	225363.0	Mm.329353	NM_144866	ENSMUSG00000024360	Etf1	AI463371|D6Ertd109e|ERF|ERF1|SUP45L1|TB3-1	eukaryotic translation termination factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-130231631-4	chr10	130231514	130231714	+	976.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20486.0	NM_146300	258297.0	Mm.377419	NM_146300	ENSMUSG00000045559	Olfr827	MOR210-5	olfactory receptor 827	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-122498098-3	chr3	122497979	122498179	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355264, intron 1 of 9)	intron (NM_001355264, intron 1 of 9)	14510.0	NM_001355264	29815.0	Mm.45815	NM_013867	ENSMUSG00000028121	Bcar3	AI131758|AND-34	breast cancer anti-estrogen resistance 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-87521380-4	chr3	87521275	87521475	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4203.0	NM_001083318	27049.0	Mm.219460	NM_012051	ENSMUSG00000003382	Etv3	AI414410|METS|Pe1	ets variant 3	protein-coding	2.64084031329396	2.75727341913041	2.56032670542114	2.37585768216087	2.01862011709014	2.40257134828912	2.78604433948313	2.70340909793378	-0.165878534139734	0.826892439739095	0.998431161219273
Merged-chr16-90316060-4	chr16	90315958	90316158	+	854.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-31555.0	NM_178923	224432.0	Mm.439811	NM_178923	ENSMUSG00000022983	Scaf4	AA517739|Sfrs15|Sra4|Srsf15	SR-related CTD-associated factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-31142016-4	chr2	31141922	31142122	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177649)	promoter-TSS (NM_001177649)	-14.0	NM_001038700	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26894291-2	chr17	26894191	26894391	+	604.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22800.0	NM_053173	16580.0	Mm.491138	NM_016761	ENSMUSG00000024301	Kifc5b	Hset|KNSL2|Kifc5a	kinesin family member C5B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28820368-2	chr7	28820247	28820447	+	597.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177301, intron 9 of 12)	intron (NM_177301, intron 9 of 12)	-4991.0	NM_016772	51798.0	Mm.291776	NM_016772	ENSMUSG00000053898	Ech1	AA617331	enoyl coenzyme A hydratase 1, peroxisomal	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-115375525-4	chr6	115375409	115375609	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001308354, intron 1 of 7)	intron (NM_001308354, intron 1 of 7)	13160.0	NM_001308354	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-120512069-4	chr5	120511980	120512180	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177595, intron 1 of 13)	intron (NM_001177595, intron 1 of 13)	888.0	NM_001177594	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-25884984-2	chr15	25884884	25885084	+	672.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001034851, intron 1 of 8)	B4A|SINE|B4	41686.0	NM_001034851	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-53881179-1	chr18	53881079	53881279	+	656.0	f0_balb.idr	intron (NM_152809, intron 1 of 12)	Tigger20a|DNA|TcMar-Tigger	19066.0	NM_152809	70425.0	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-33216077-1	chr12	33215977	33216177	+	781.0	f1_c57bl6.idr	intron (NM_028139, intron 2 of 3)	intron (NM_028139, intron 2 of 3)	68391.0	NM_028139	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	-1.21575676353841	-1.1882771616738	-1.1995328574972	-1.2087786211754	-1.21524488394202	-1.18583800543462	-1.19698481468061	-0.540595393272118	2.74438217975722	0.425994238664144	1
Merged-chr6-149126854-2	chr6	149126754	149126954	+	865.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-14659.0	NM_001252096	320204.0	Mm.274099	NM_177101	ENSMUSG00000039958	Etfbkmt	4833442J19Rik|AI256744|ETFB-KMT|Mettl20	electron transfer flavoprotein beta subunit lysine methyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-5223604-4	chr12	5223546	5223746	+	860.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164493, intron 2 of 13)	intron (NM_001164493, intron 2 of 13)	152036.0	NM_001164493	208439.0	Mm.388281	NM_001164493	ENSMUSG00000020627	Klhl29	A230106N14Rik|Gm68|Kbtbd9|mKIAA1921	kelch-like 29	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-72554646-4	chr5	72554613	72554813	+	856.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153351, intron 3 of 21)	intron (NR_153351, intron 3 of 21)	4932.0	NM_001359837	100978.0	Mm.187453	NM_133921	ENSMUSG00000072889	Nfxl1	1700012H24Rik|AW538212|D430033A06Rik|DNABF|GCF|Gm1058|TCF9	nuclear transcription factor, X-box binding-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-41122910-4	chr9	41122797	41122997	+	941.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176860, intron 1 of 13)	MIR3|SINE|MIR	35165.0	NM_176860	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-99364295-3	chr5	99364207	99364407	+	919.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-111380.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-73160950-3	chr2	73160865	73161065	+	983.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030091, intron 4 of 7)	ORR1D2|LTR|ERVL-MaLR	53482.0	NM_030091	67059.0	Mm.22661	NM_025942	ENSMUSG00000027108	Ola1	2510025G09Rik|2810405J23Rik|2810409H07Rik|Gtpbp9|PTD004	Obg-like ATPase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-136082551-2	chr5	136082451	136082651	+	760.916626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1365.0	NM_133914	54153.0	Mm.290655	NM_133914	ENSMUSG00000004952	Rasa4	AA793972|AW112107|BB079060|CAPRI|GAPL	RAS p21 protein activator 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-137818547-4	chr4	137818445	137818645	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16_Mm|LTR|ERVK	-22161.0	NM_007431	11647.0	Mm.288186	NM_007431	ENSMUSG00000028766	Alpl	ALP|APTNAP|Akp-2|Akp2|TNAP|TNSALP	alkaline phosphatase, liver/bone/kidney	protein-coding	4.83169568950319	5.79191113093978	5.6564337059865	5.25667002781799	5.64557244890411	4.94029585482352	4.83375910631051	5.36632420509385	-0.205296198697384	0.52935026751998	0.949538200394407
Merged-chr6-51567824-4	chr6	51567722	51567922	+	776.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361577, intron 2 of 6)	intron (NM_001361577, intron 2 of 6)	22529.0	NM_001361577	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	0.941944650286584	1.78877450116178	0.788689352502784	1.65834549511793	1.47557578365303	0.808495551366971	1.83059945600311	0.778158035015862	-0.206885593369703	0.885327568143148	0.998431161219273
Merged-chr14-32201944-4	chr14	32201836	32202036	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016897)	promoter-TSS (NM_016897)	-35.0	NM_001359915	26430.0	Mm.15962	NM_011960	ENSMUSG00000021911	Parg	AI413217	poly (ADP-ribose) glycohydrolase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-56832112-4	chr6	56832001	56832201	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_012056)	promoter-TSS (NM_012056)	42.0	NM_012056	27055.0	Mm.20943	NM_012056	ENSMUSG00000029781	Fkbp9	1810014L23|AW549641|FKBP-63|FKBP-9|FKBP60|FKBP63|FKBP65RS	FK506 binding protein 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-113729161-4	chr9	113729050	113729250	+	835.891663	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12323.0	NM_001286599	76499.0	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-54467726-4	chr9	54467636	54467836	+	933.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172771, intron 6 of 43)	L2a|LINE|L2	33890.0	NM_172771	235380.0	Mm.93636	NM_172771	ENSMUSG00000041268	Dmxl2	6330586A12|6430411K14Rik|E130119P06Rik|mKIAA0856	Dmx-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-126083990-3	chr4	126083843	126084043	+	929.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172701, intron 6 of 9)	ID_B1|SINE|B4	-12710.0	NM_001163266	116748.0	Mm.41865	NM_138721	ENSMUSG00000050188	Lsm10	-	U7 snRNP-specific Sm-like protein LSM10	protein-coding	1.25068671059415	1.55105532064151	2.03063565922633	1.31141149733102	1.25990210756278	1.5629343693562	1.75981157243872	0.94517272098019	-0.541548380329482	0.650937726171719	0.985970995710291
Merged-chr11-3663606-4	chr11	3663495	3663695	+	719.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159288, intron 4 of 26)	MERVL_2A-int|LTR|ERVL	4895.0	NM_198162	74522.0	Mm.139127	NM_198162	ENSMUSG00000034543	Morc2a	8430403M08Rik|Zcwcc1	microrchidia 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-84969386-2	chr16	84969286	84969486	+	868.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001198825, intron 13 of 15)	intron (NM_001198825, intron 13 of 15)	-2825.0	NR_045889	100038614.0	Mm.441351	NR_045889	ENSMUSG00000115518	Gm10791	-	predicted gene 10791	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55588953-2	chr19	55588853	55589053	+	879.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360431, intron 8 of 8)	intron (NM_001360431, intron 8 of 8)	113251.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-36530795-4	chr16	36530673	36530873	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013803, intron 1 of 6)	intron (NM_013803, intron 1 of 6)	31361.0	NM_013803	12374.0	Mm.103619	NM_013803	ENSMUSG00000051980	Casr	CaR|Gprc2a	calcium-sensing receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100952867-4	chr7	100952786	100952986	+	861.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183168, intron 1 of 2)	intron (NM_183168, intron 1 of 2)	11480.0	NM_183168	233571.0	Mm.235193	NM_183168	ENSMUSG00000048779	P2ry6	2010204J23Rik|P2Y6	pyrimidinergic receptor P2Y, G-protein coupled, 6	protein-coding	1.03723548825956	0.915426568250527	1.52618403606778	1.58578226958859	1.30650517985378	1.31249369300413	1.41422473128237	1.59460303527288	0.410333765928679	0.741514564795891	0.998431161219273
Merged-chr2-38602899-3	chr2	38602770	38602970	+	810.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011187, intron 6 of 7)	intron (NM_011187, intron 6 of 7)	41036.0	NM_011187	19177.0	Mm.389251	NM_011187	ENSMUSG00000026750	Psmb7	AU020723|MC14	proteasome (prosome, macropain) subunit, beta type 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-18245378-4	chr3	18245258	18245458	+	910.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	-2020.0	NM_007825	13123.0	Mm.316000	NM_007825	ENSMUSG00000039519	Cyp7b1	AW261589|D3Ertd552e|hct-1	cytochrome P450, family 7, subfamily b, polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75166685-2	chr11	75166585	75166785	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001098203, exon 2 of 2)	exon (NM_001098203, exon 2 of 2)	1467.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-43903628-2	chr10	43903528	43903728	+	660.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_152603, intron 1 of 7)	intron (NR_152603, intron 1 of 7)	1821.0	NM_130892	170728.0	Mm.390253	NM_130892	ENSMUSG00000019864	Rtn4ip1	D10Ertd690e|NIMP	reticulon 4 interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-53387377-1	chr19	53387277	53387477	+	561.0	f1_balb.idr	intron (NM_172429, intron 2 of 5)	intron (NM_172429, intron 2 of 5)	2664.0	NM_001356986	76479.0	Mm.313687	NM_172429	ENSMUSG00000025024	Smndc1	-	survival motor neuron domain containing 1	protein-coding	-0.328485408621411	-0.313801182826123	-0.318599646620931	-0.322309889347996	0.426254021801333	-0.312721134269449	0.28331526107478	-0.321661199717722	3.79718971205449	0.135737096960353	1
Merged-chr3-69606667-4	chr3	69606553	69606753	+	909.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7693.0	NM_020026	26879.0	Mm.153710	NM_020026	ENSMUSG00000043300	B3galnt1	B3galt3|b3GT3	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 1	protein-coding	1.33021596511919	1.84713932726823	2.17097065341801	2.38208255019905	1.79304352736468	2.4732576625573	1.1864101329519	1.88439737429436	-0.195624834144971	0.85252419112231	0.998431161219273
Merged-chr8-26979676-2	chr8	26979576	26979776	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001101502, exon 2 of 2)	exon (NM_001101502, exon 2 of 2)	2340.0	NM_001110508	353310.0	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31363480-2	chr14	31363380	31363580	+	832.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001360187, exon 13 of 21)	exon (NM_001360187, exon 13 of 21)	26842.0	NM_009796	12339.0	Mm.201535	NM_009796	ENSMUSG00000021893	Capn7	AU022319|PalBH	calpain 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135943510-2	chr4	135943410	135943610	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2938.0	NM_008254	15356.0	Mm.482102	NM_008254	ENSMUSG00000028672	Hmgcl	AW476067|HL	3-hydroxy-3-methylglutaryl-Coenzyme A lyase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-9118690-2	chr11	9118590	9118790	+	709.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159402, intron 1 of 8)	intron (NM_001159402, intron 1 of 8)	183.0	NM_001159402	22271.0	Mm.4610	NM_009477	ENSMUSG00000020407	Upp1	AI325217|UPase|UdRPase|Up|Upp	uridine phosphorylase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120308360-2	chr11	120308260	120308460	+	949.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	39053.0	NR_105900	102465564.0		NR_105900	ENSMUSG00000098955	Mir6935	Gm27344|mmu-mir-6935	microRNA 6935	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-43673231-2	chr7	43673131	43673331	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145582, intron 1 of 2)	intron (NM_145582, intron 1 of 2)	1200.0	NM_145582	233189.0	Mm.26514	NM_145582	ENSMUSG00000038888	Ctu1	Atpbd3|BC005752	cytosolic thiouridylase subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128459111-4	chr10	128459110	128459310	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001114096)	promoter-TSS (NM_001114096)	-26.0	NM_001114096	68094.0	Mm.417338	NM_198160	ENSMUSG00000025369	Smarcc2	5930405J04Rik	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35251504-2	chr17	35251404	35251604	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_106169)	TTS (NR_106169)	215.0	NR_106169	102465886.0		NR_106169	ENSMUSG00000098269	Mir8094	Gm27513|mmu-mir-8094	microRNA 8094	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-59210135-4	chr3	59210043	59210243	+	909.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_028808, exon 2 of 2)	exon (NM_028808, exon 2 of 2)	739.0	NM_028808	74191.0	Mm.90067	NM_028808	ENSMUSG00000036362	P2ry13	2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174	purinergic receptor P2Y, G-protein coupled 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-4274895-2	chr8	4274795	4274995	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011592, intron 1 of 12)	7SK|RNA|RNA	1010.0	NM_011592	21856.0	Mm.195249	NM_011592	ENSMUSG00000002949	Timm44	0710005E20Rik|D8Ertd118e|Mimt44|Tim44	translocase of inner mitochondrial membrane 44	protein-coding	-0.0937779016487682	-0.0719071661104309	-0.0789897019682585	0.814103220689335	-0.0923900531307111	-0.0703212145392541	-0.0774209231287954	0.823999795812423	0.028149547091201	0.990511584420544	1
Merged-chr9-70392715-3	chr9	70392600	70392800	+	951.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181072, intron 26 of 27)	intron (NM_181072, intron 26 of 27)	13053.0	NR_049200	100885839.0		NR_049200	ENSMUSG00000093763	Mir5626	Gm25590|mir-5626|mmu-mir-5626	microRNA 5626	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-127077811-2	chr2	127077710	127077910	+	737.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026678, intron 1 of 7)	intron (NM_026678, intron 1 of 7)	7153.0	NM_026678	109778.0	Mm.22028	NM_026678	ENSMUSG00000001999	Blvra	0610006A11Rik|2500001N03Rik|Blvr	biliverdin reductase A	protein-coding	1.77514693792964	0.864894350960098	1.06863781508305	1.36293608937948	1.0046133196342	1.95420483520496	1.78257081774415	0.838259645519613	0.574133056175732	0.668180023576358	0.993302559372498
Merged-chr11-119875876-4	chr11	119875781	119875981	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028898, intron 24 of 33)	intron (NM_028898, intron 24 of 33)	-6408.0	NR_039557	100628577.0		NR_039557	ENSMUSG00000093061	Mir5098	mmu-mir-5098|mu-mir-5098	microRNA 5098	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-144936867-2	chr7	144936766	144936966	+	754.3125	f1_balb.idr|f1_c57bl6.idr	intron (NM_007631, intron 3 of 4)	intron (NM_007631, intron 3 of 4)	3059.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	2.74673537132399	3.11270121248701	4.37460570737159	3.12533031169444	2.0140395988314	3.71882662422014	4.09215241998636	3.14229637218405	-0.0930361710643952	0.892630871853695	0.998431161219273
Merged-chr15-96770585-1	chr15	96770485	96770685	+	679.0	f0_balb.idr	Intergenic	G-rich|Low_complexity|Low_complexity	-70857.0	NM_175121	67760.0	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-135651111-2	chr7	135651011	135651211	+	647.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001316681)	promoter-TSS (NM_001316681)	-788.0	NM_001316681	19267.0	Mm.945	NM_011212	ENSMUSG00000041836	Ptpre	PTPe|PTPepsilon|RPTPepsilon	protein tyrosine phosphatase, receptor type, E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-43954121-3	chr10	43954029	43954229	+	824.638916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172393, intron 19 of 19)	intron (NM_172393, intron 19 of 19)	50717.0	NM_172393	11630.0	Mm.292082	NM_172393	ENSMUSG00000019866	Crybg1	AI462491|AI463325|Aim1	crystallin beta-gamma domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-45075042-4	chr14	45074956	45075156	+	964.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	86945.0	NM_008964	19217.0	Mm.4630	NM_008964	ENSMUSG00000037759	Ptger2	EP2|Ptgerep2	prostaglandin E receptor 2 (subtype EP2)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-108718333-2	chr6	108718233	108718433	+	560.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57399.0	NR_104577	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106136143-2	chr11	106136043	106136243	+	817.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011947, intron 6 of 15)	intron (NM_011947, intron 6 of 15)	23784.0	NM_001356459	67803.0	Mm.21687	NM_172397	ENSMUSG00000040699	Limd2	0610025L06Rik|AI413966	LIM domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-78820107-4	chr8	78820016	78820216	+	997.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001191004, intron 1 of 4)	MIR3|SINE|MIR	1036.0	NM_001191004	78651.0	Mm.28694	NM_030145	ENSMUSG00000031683	Lsm6	1500031N17Rik|2410088K19Rik|AI747288	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-106361350-2	chr9	106361249	106361449	+	691.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7283.0	NM_153459	235584.0	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	1.87318457580581	2.21031607462164	1.43308511711009	1.72579908052231	1.88818830490361	1.47873444621175	2.04336212860791	2.1805688853269	0.244433787323759	0.806653497890462	0.998431161219273
Merged-chr6-125231289-3	chr6	125231196	125231396	+	831.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015604)	promoter-TSS (NR_015604)	20.0	NR_015604	78668.0	Mm.10626	NR_015604	ENSMUSG00000030337	E130112N10Rik	5830448L21Rik|9530059J11Rik	RIKEN cDNA E130112N10 gene	ncRNA	-1.84362945061595	-1.81329140012928	-1.67810947190254	-1.83000206547234	-1.84149977556685	-1.81130325271815	-1.67603257143677	-1.82865309133977	0.037684011990387	0.991491645451152	1
Merged-chr16-61583299-1	chr16	61583199	61583399	+	550.0	f1_balb.idr	Intergenic	Intergenic	-977768.0	NM_007938	13840.0	Mm.455790	NM_007938	ENSMUSG00000055540	Epha6	Ehk2|Hek12|m-ehk2	Eph receptor A6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-84180134-2	chr12	84180034	84180234	+	850.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163501, intron 1 of 12)	intron (NM_001163501, intron 1 of 12)	13881.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-113722189-4	chr7	113722097	113722297	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-43801.0	NM_145584	233744.0	Mm.334160	NM_145584	ENSMUSG00000038156	Spon1	AI666765|AW455831|BC020531|D330035F22Rik|FSP	spondin 1, (f-spondin) extracellular matrix protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117949822-4	chr11	117949664	117949864	+	875.591675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	19602.0	NM_007707	12702.0	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-35210427-4	chr9	35210325	35210525	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026130)	promoter-TSS (NM_026130)	630.0	NM_172291	235169.0	Mm.138512	NM_172291	ENSMUSG00000039048	Foxred1	BC024806|TEG-23|Tex23	FAD-dependent oxidoreductase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-68952220-1	chr5	68952120	68952320	+	669.0	f1_balb.idr	Intergenic	L1_Mus2|LINE|L1	389489.0	NM_175519	243043.0	Mm.234821	NM_175519	ENSMUSG00000037653	Kctd8	A730087N02Rik	potassium channel tetramerisation domain containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-16168998-2	chr3	16168898	16169098	+	634.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER3D-int|LTR|ERVK	-14167.0	NM_001358043	229096.0	Mm.23834	NM_172677	ENSMUSG00000047213	Ythdf3	9130022A11Rik	YTH domain family 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-57998345-2	chr19	57998245	57998445	+	590.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_181415, intron 27 of 28)	intron (NM_181415, intron 27 of 28)	-52822.0	NR_049196	100885835.0		NR_049196	ENSMUSG00000093757	Mir5623	Gm26068|mir-5623|mmu-mir-5623	microRNA 5623	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-63431726-4	chr13	63431614	63431814	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001042673)	promoter-TSS (NM_001042673)	31.0	NM_001347515	14088.0	Mm.126106	NM_007985	ENSMUSG00000021461	Fancc	Facc	Fanconi anemia, complementation group C	protein-coding	5.88584057483287	5.07484647731147	5.15502902864882	6.09701435334005	5.49384906139349	5.42077605999942	5.42549427731974	5.80731986389016	-0.098175170972664	0.744708584503877	0.998431161219273
Merged-chr6-17636959-4	chr6	17636853	17637053	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007604)	promoter-TSS (NM_007604)	-57.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-136978062-2	chr5	136977946	136978146	+	556.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8858.0	NM_001310747	70103.0	Mm.273147	NM_027318	ENSMUSG00000059518	Znhit1	2700001K05Rik|ZNFN4A1	zinc finger, HIT domain containing 1	protein-coding	2.41854232394138	3.09284447575733	2.99663756613496	2.30082774806306	2.43756427597887	3.11358961068576	2.3790181438137	2.3115959557286	-0.293986538017834	0.695276445513455	0.997870549741095
Merged-chr8-122431732-4	chr8	122431636	122431836	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301284, intron 1 of 4)	intron (NM_001301284, intron 1 of 4)	1204.0	NM_001301284	13057.0	Mm.271671	NM_007806	ENSMUSG00000006519	Cyba	b558|nmf333|p22-phox|p22phox	cytochrome b-245, alpha polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-70097038-4	chr10	70096920	70097120	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001111121)	promoter-TSS (NM_001111121)	-101.0	NM_001111121	76551.0	Mm.281741	NM_001111121	ENSMUSG00000048701	Ccdc6	2810012H18Rik|AA536681|AA960498|AW061011	coiled-coil domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-13672531-6	chr16	13672420	13672620	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177552, intron 1 of 5)	intron (NM_001177552, intron 1 of 5)	662.0	NM_025653	67118.0	Mm.223689	NM_025653	ENSMUSG00000022684	Bfar	3010001A07Rik|3110001I22Rik|AI666707|AW107665|Bar|Rnf47	bifunctional apoptosis regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-28885300-1	chr13	28885200	28885400	+	760.0	f0_balb.idr	non-coding (NR_045053, exon 1 of 9)	non-coding (NR_045053, exon 1 of 9)	122.0	NR_045054	72518.0	Mm.37454	NR_045053		2610307P16Rik	AI666457	RIKEN cDNA 2610307P16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-47512070-4	chr19	47511958	47512158	+	903.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045322)	promoter-TSS (NR_045322)	-924.0	NR_045322	100503104.0	Mm.442735	NR_045322	ENSMUSG00000097990	Gm19557	-	predicted gene, 19557	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-75378778-2	chr18	75378678	75378878	+	684.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001042660, intron 3 of 3)	intron (NM_001042660, intron 3 of 3)	11413.0	NM_001042660	17131.0	Mm.34407	NM_008543	ENSMUSG00000025880	Smad7	Madh7	SMAD family member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-43873347-2	chr7	43873247	43873447	+	969.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7825.0	NM_019928	56640.0	Mm.42080	NM_019928	ENSMUSG00000006948	Klk4	ESMP1|KLK-L1|PSTS|Prss17	kallikrein related-peptidase 4 (prostase, enamel matrix, prostate)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-21016789-4	chr2	21016704	21016904	+	838.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47930.0	NR_033225	433408.0	Mm.386941	NR_033225		Gm13375	-	predicted gene 13375	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69443466-3	chr11	69443361	69443561	+	680.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081330, intron 63 of 85)	B1F2|SINE|Alu	-29786.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118474068-4	chr11	118473967	118474167	+	966.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	BGLII|LTR|ERVK	-2765.0	NM_172573	217364.0	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153299154-4	chr2	153299076	153299276	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008444, intron 1 of 8)	MIRb|SINE|MIR	7760.0	NM_008444	16569.0	Mm.315560	NM_008444	ENSMUSG00000027475	Kif3b	AI854312|AW549267|mKIAA0359	kinesin family member 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-108719542-3	chr3	108719431	108719631	+	667.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029522, intron 1 of 14)	intron (NM_029522, intron 1 of 14)	2768.0	NM_029522	76123.0	Mm.226941	NM_029522	ENSMUSG00000027883	Gpsm2	6230410J09Rik|LGN|Pins	G-protein signalling modulator 2 (AGS3-like, C. elegans)	protein-coding	1.96270074435701	0.843496694538543	1.0488743511184	1.34296427323131	1.98178144208868	0.847112454826809	1.05620693418939	1.35057047583631	0.0388506418362418	0.977032443428734	0.998431161219273
Merged-chr5-113225287-3	chr5	113225190	113225390	+	999.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-1619.0	NM_001033428	333048.0	Mm.332586	NM_001033428	ENSMUSG00000066964	Tmem211	Gm854	transmembrane protein 211	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-39345700-2	chr18	39345600	39345800	+	715.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361073, intron 20 of 21)	intron (NM_001361073, intron 20 of 21)	141545.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	1.37572282358922	1.38411001426084	1.60002105784584	1.31281591910928	1.38573597682313	1.54048888177943	1.61233793152032	1.31831583863203	0.182419553844911	0.871483768065909	0.998431161219273
Merged-chr6-134792685-4	chr6	134792561	134792761	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001048054)	promoter-TSS (NM_001048054)	-33.0	NM_001048054	70686.0	Mm.491182	NM_130447	ENSMUSG00000030203	Dusp16	3830417M17Rik|AW558566|D6Ertd213e|MKP-7|MKP7|Mkpm	dual specificity phosphatase 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-66109385-4	chr7	66109291	66109491	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081163)	promoter-TSS (NM_001081163)	-124.0	NM_001081163	269941.0	Mm.333916	NM_001081163	ENSMUSG00000032640	Chsy1	mKIAA0990	chondroitin sulfate synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-4236520-4	chr11	4236481	4236681	+	765.5625	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001013365)	promoter-TSS (NM_001013365)	-204.0	NM_001013365	18413.0	Mm.131422	NM_001013365	ENSMUSG00000058755	Osm	OncoM	oncostatin M	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-17508312-2	chr16	17508212	17508412	+	696.916687	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025808)	promoter-TSS (NM_025808)	-371.0	NM_001331227	66863.0	Mm.161726	NM_025808	ENSMUSG00000022761	Lztr1	1200003E21Rik|AI591627|AW550890	leucine-zipper-like transcriptional regulator, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-98956839-2	chr9	98956739	98956939	+	802.833313	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_012020, exon 1 of 1)	3' UTR (NM_012020, exon 1 of 1)	1232.0	NM_012020	26927.0	Mm.151239	NM_012020	ENSMUSG00000050397	Foxl2	AU045128|BPES|PINTO|Pfrk	forkhead box L2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-29947037-4	chr5	29946906	29947106	+	990.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66108.0	NM_001314054	16193.0	Mm.1019	NM_031168	ENSMUSG00000025746	Il6	Il-6	interleukin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-89149306-4	chr18	89149205	89149405	+	838.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48122.0	NM_178687	225825.0	Mm.139293	NM_178687	ENSMUSG00000034028	Cd226	BC051526|DNAM-1|DNAM1|Pta1|TLiSA1	CD226 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-43575511-2	chr17	43575411	43575611	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013737, intron 1 of 11)	intron (NM_013737, intron 1 of 11)	7060.0	NM_013737	27226.0	Mm.9277	NM_013737	ENSMUSG00000023913	Pla2g7	PAF-AH|R75400	phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-28423534-4	chr6	28423433	28423633	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007480)	promoter-TSS (NM_007480)	-71.0	NM_007480	11844.0	Mm.389075	NM_007480	ENSMUSG00000020440	Arf5	-	ADP-ribosylation factor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41851137-2	chr19	41851037	41851237	+	596.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3005.0	NM_177603	212398.0	Mm.222723	NM_177603	ENSMUSG00000047604	Frat2	-	frequently rearranged in advanced T cell lymphomas 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-85542977-2	chr3	85542877	85543077	+	812.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-31152.0	NM_144896	229487.0	Mm.52275	NM_144896	ENSMUSG00000028085	Gatb	9430026F02Rik|Pet112|Pet112l	glutamyl-tRNA(Gln) amidotransferase, subunit B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-40647693-4	chr19	40647571	40647771	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304721, intron 1 of 9)	T-rich|Low_complexity|Low_complexity	-12099.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	5.01939046312471	4.50074948619708	4.92175612614192	5.04142105144115	4.97157594017266	4.7001643490229	4.38829576788734	4.31486732873478	-0.329599965336062	0.352329918663263	0.852434760027623
Merged-chr5-122767227-2	chr5	122767127	122767327	+	611.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199676, intron 1 of 16)	intron (NM_001199676, intron 1 of 16)	12183.0	NM_001199676	207565.0	Mm.289237	NM_145358	ENSMUSG00000029471	Camkk2	6330570N16Rik|AW061083|mKIAA0787	calcium/calmodulin-dependent protein kinase kinase 2, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-92370583-4	chr5	92370494	92370694	+	935.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310664, intron 2 of 10)	intron (NM_001310664, intron 2 of 10)	-7298.0	NR_038116	56066.0	Mm.131723	NM_019494	ENSMUSG00000060183	Cxcl11	Cxc11|H174|I-tac|Ip9|Itac|Scyb11|Scyb9b|b-R1|betaR1	chemokine (C-X-C motif) ligand 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-119845828-2	chr4	119845728	119845928	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010657, intron 1 of 8)	ORR1D2|LTR|ERVL-MaLR	31150.0	NM_010657	16656.0	Mm.302758	NM_010657	ENSMUSG00000028634	Hivep3	2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3	human immunodeficiency virus type I enhancer binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-75842527-1	chr13	75842427	75842627	+	577.0	f1_c57bl6.idr	intron (NM_053108, intron 1 of 2)	B4A|SINE|B4	2641.0	NM_053108	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	1.77205527891393	1.8956501516477	2.03193703601614	0.990499326417377	1.45998729981594	1.910893982829	1.42424500203688	0.993151459642753	-0.771256491870577	0.524795833174177	0.948340152465298
Merged-chr2-128761518-2	chr2	128761418	128761618	+	804.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 7 of 18)	L1MEc|LINE|L1	-56785.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-63935620-2	chr5	63935520	63935720	+	944.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145923, intron 3 of 6)	intron (NM_145923, intron 3 of 6)	33277.0	NM_145923	100532.0	Mm.243632	NM_145923	ENSMUSG00000047881	Rell1	AA536743	RELT-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-49834607-2	chr18	49834507	49834707	+	773.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081371, intron 1 of 42)	intron (NM_001081371, intron 1 of 42)	1610.0	NM_001081371	240283.0	Mm.257790	NM_001081371	ENSMUSG00000037416	Dmxl1	C630007L23Rik|D030030C22	Dmx-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27961683-2	chr17	27961584	27961784	+	688.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_181413, intron 1 of 24)	MIRc|SINE|MIR	52378.0	NM_181413	224650.0	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	-0.294083384950798	-0.277963382818132	0.430175288204581	-0.287290034214969	-0.293070061983337	-0.276782190008417	0.44311158986884	-0.286577643912737	0.0410571026119648	0.987250810110592	1
Merged-chr18-64954227-4	chr18	64954129	64954329	+	869.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114386, intron 1 of 30)	intron (NM_001114386, intron 1 of 30)	66473.0	NM_001114386	83814.0	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	4.30969427027767	4.33954562778184	3.88273304537783	3.97465487078767	4.21736651148293	4.4792650042378	3.48211660267532	3.71985351372218	-0.150266562771668	0.740030831712013	0.998431161219273
Merged-chr18-60789467-4	chr18	60789348	60789548	+	990.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14401.0	NM_001042605	16149.0	Mm.439737	NM_010545	ENSMUSG00000024610	Cd74	CLIP|DHLAG|HLADG|Ia-GAMMA|Ii	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	protein-coding	4.75187466036179	4.46079778982148	4.96401679741153	3.48483015095025	4.48122139224023	4.24354146319902	4.64940994771481	3.18146288051962	-0.356020289888327	0.456848570946618	0.919264728457769
Merged-chr1-178144925-1	chr1	178144825	178145025	+	616.0	f0_balb.idr	intron (NR_155538, intron 17 of 21)	intron (NR_155538, intron 17 of 21)	-42492.0	NM_024282	78825.0	Mm.440132	NM_024282	ENSMUSG00000026502	Desi2	5830417C01Rik|DeSI-2|Fam152a|Pppde1	desumoylating isopeptidase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-105656375-1	chr9	105656275	105656475	+	698.0	f0_balb.idr	intron (NM_001081309, intron 6 of 19)	MTD|LTR|ERVL-MaLR	13380.0	NM_001081309	75669.0	Mm.274830	NM_029380	ENSMUSG00000032571	Pik3r4	2210010O15Rik|C730038E05Rik|C85833|D9Ertd418e|Vps15|p150	phosphoinositide-3-kinase regulatory subunit 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-20713615-4	chr18	20713503	20713703	+	997.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019737, intron 3 of 8)	intron (NM_019737, intron 3 of 8)	32801.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30963040-2	chr2	30962940	30963140	+	590.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144884, intron 4 of 4)	intron (NM_144884, intron 4 of 4)	4878.0	NM_144884	30931.0	Mm.154994	NM_144884	ENSMUSG00000026849	Tor1a	DQ2|Dyt1|torsinA	torsin family 1, member A (torsin A)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-30591650-1	chr12	30591550	30591750	+	665.0	f1_balb.idr	TTS (NM_172049)	TTS (NM_172049)	7207.0	NM_172049	211986.0	Mm.34035	NM_172049	ENSMUSG00000043061	Tmem18	BC024093	transmembrane protein 18	protein-coding	-1.31349849087795	-1.28274354783242	-1.29349452597086	-1.3023256995151	-1.3130151546297	-1.28041376602105	-0.694015972326031	-1.30074492367298	2.57396649482007	0.456321314346772	1
Merged-chr10-80597290-4	chr10	80597184	80597384	+	974.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-5596.0	NM_001100606	100113398.0	Mm.273170	NM_001100606	ENSMUSG00000113640	Adat3	A430024H01Rik	adenosine deaminase, tRNA-specific 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-40321223-2	chr8	40321131	40321331	+	830.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_030110, intron 1 of 14)	ORR1E|LTR|ERVL-MaLR	13180.0	NM_030110	78506.0	Mm.169893	NM_030110	ENSMUSG00000039478	Micu3	2900075B16Rik|Efha2	mitochondrial calcium uptake family, member 3	protein-coding	4.38396884135223	3.26990698847749	3.94379763426943	4.48034599257323	3.73369834095035	2.21671870181352	4.26608463712284	3.91834020376148	-0.523193046955631	0.355895318451998	0.853664850644233
Merged-chr7-30393264-5	chr7	30393124	30393324	+	902.7333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-20564.0	NM_011662	22177.0	Mm.46301	NM_011662	ENSMUSG00000030579	Tyrobp	DAP12|KARAP|Ly83	TYRO protein tyrosine kinase binding protein	protein-coding	1.80312590338058	1.90367504167234	1.11248893029126	1.78421931817152	1.81856067419107	1.91830173646385	1.11740716005148	2.50083509697554	0.720889755547017	0.523961579307522	0.948197779519432
Merged-chr2-144635988-3	chr2	144635905	144636105	+	844.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025314, intron 4 of 5)	intron (NM_025314, intron 4 of 5)	36052.0	NM_025314	66044.0	Mm.28109	NM_025314	ENSMUSG00000027430	Dtd1	0610006H08Rik|DTD|DUE-B|Hars2	D-tyrosyl-tRNA deacylase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131977932-5	chr1	131977808	131978008	+	810.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_145977, exon 3 of 5)	exon (NM_145977, exon 3 of 5)	7299.0	NM_145977	212980.0	Mm.200307	NM_145977	ENSMUSG00000026435	Slc45a3	2210413P12Rik|AU023994|AU043764|IPCA-6|PRST|Pcanap6	solute carrier family 45, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-61188582-2	chr10	61188482	61188682	+	747.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001017419, intron 9 of 9)	intron (NM_001017419, intron 9 of 9)	13320.0	NM_023064	65971.0	Mm.30227	NM_023064	ENSMUSG00000020096	Tbata	1700021K02Rik|AI428928|Spatial|Titest	thymus, brain and testes associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-97993353-2	chr3	97993253	97993453	+	726.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20185.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-99030365-2	chr6	99030265	99030465	+	687.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001197321, intron 4 of 17)	intron (NM_001197321, intron 4 of 17)	-2067.0	NM_001197322	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-35124947-4	chr7	35124842	35125042	+	968.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5649.0	NM_007678	12606.0	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-78835464-4	chr17	78835365	78835565	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081179)	promoter-TSS (NM_001081179)	-51.0	NM_181649	53951.0	Mm.220253	NM_181649	ENSMUSG00000050668	Gpatch11	2310002B06Rik|C80922|Ccdc75|L26697	G patch domain containing 11	protein-coding	7.52432641457762	7.30190176039947	7.57842970722866	7.85318350212637	7.68486161174277	7.41837280336842	7.74401466092198	7.28915691214763	-0.0340400642221658	0.835295466882864	0.998431161219273
Merged-chr11-79119020-4	chr11	79118906	79119106	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013571, intron 1 of 17)	intron (NM_013571, intron 1 of 17)	27467.0	NM_013571	16706.0	Mm.4745	NM_013571	ENSMUSG00000018334	Ksr1	AW492498|B-KSR1|D11Bhm183e|D11Bhm184e|Ksr|RSU2|hb|mKSR1	kinase suppressor of ras 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-84060430-2	chr6	84060330	84060530	+	669.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077694, intron 4 of 54)	B4|SINE|B4	41044.0	NM_021469	26903.0	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-86446303-3	chr15	86446212	86446412	+	947.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358062, intron 8 of 9)	MTC|LTR|ERVL-MaLR	168637.0	NM_001358062	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-84179576-4	chr11	84179460	84179660	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-12084.0	NM_001037932	628813.0	Mm.390389	NM_001037932	ENSMUSG00000051452	Gm11437	AI463690	predicted gene 11437	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-123045956-2	chr8	123045856	123046056	+	556.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3381.0	NR_045268	100503178.0	Mm.294938	NR_045268	ENSMUSG00000099881	2810013P06Rik	-	RIKEN cDNA 2810013P06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-46535360-4	chr4	46535297	46535497	+	869.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_151695)	promoter-TSS (NR_151695)	-504.0	NR_151695	105247126.0	Mm.477962	NR_151695		Gm16731	-	predicted gene, 16731	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-151564589-4	chr1	151564499	151564699	+	891.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6774.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-22302846-2	chr16	22302746	22302946	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7858.0	NR_153764	100043507.0		NR_153764		Gng5-ps	Gm15776	G protein subunit gamma 5, pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-21095059-2	chr11	21094959	21095159	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023324, intron 1 of 6)	intron (NM_023324, intron 1 of 6)	3735.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-101192964-3	chr2	101192865	101193065	+	867.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-431783.0	NM_009020	19374.0	Mm.4988	NM_009020	ENSMUSG00000032864	Rag2	Rag-2	recombination activating gene 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-34190859-2	chr5	34190759	34190959	+	555.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3149.0	NM_010753	17122.0	Mm.259260	NM_010753	ENSMUSG00000037235	Mxd4	2810410A03Rik|Mad4|bHLHc12	Max dimerization protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-107646137-4	chr5	107646034	107646234	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359917, intron 11 of 12)	B1_Mur1|SINE|Alu	-12284.0	NR_046195	78443.0	Mm.490703	NR_046195	ENSMUSG00000085900	A930041C12Rik	-	RIKEN cDNA A930041C12 gene	ncRNA	4.63111782771731	5.56351709768165	4.34617837473878	3.49438944844094	5.63500599139363	6.0044813114283	5.84411820378849	5.93706336545966	1.34738633127721	0.000267455670165727	0.00674145615682436
Merged-chr11-62576698-4	chr11	62576590	62576790	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011706, intron 2 of 15)	intron (NM_011706, intron 2 of 15)	2204.0	NM_011706	22368.0	Mm.288064	NM_011706	ENSMUSG00000018507	Trpv2	GRC|OTRPC2|VRL-1|Vrl1	transient receptor potential cation channel, subfamily V, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-119240781-1	chr5	119240681	119240881	+	765.5	f0_balb.idr	Intergenic	Intergenic	-40763.0	NR_046033	665194.0	Mm.491047	NR_046033	ENSMUSG00000107334	Gm7538	EG665194	predicted gene 7538	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-120912027-2	chr6	120911972	120912172	+	727.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007544, intron 1 of 5)	intron (NM_007544, intron 1 of 5)	4752.0	NM_007544	12122.0	Mm.235081	NM_007544	ENSMUSG00000004446	Bid	2700049M22Rik|AI875481|AU022477	BH3 interacting domain death agonist	protein-coding	-0.711713561034065	-0.721883571325813	-1.07191524228021	-1.07790974157835	-1.08061855601154	-1.05832924914531	-1.06938745358593	-1.07757418096765	-2.67595575402854	0.401150602523657	1
Merged-chr4-59596795-4	chr4	59596685	59596885	+	913.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301367, intron 5 of 11)	intron (NM_001301367, intron 5 of 11)	15222.0	NM_024255	72479.0	Mm.272905	NM_024255	ENSMUSG00000028383	Hsdl2	2610207I16Rik	hydroxysteroid dehydrogenase like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-112131334-4	chr13	112131164	112131364	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-157187.0	NM_001168403	77318.0	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71300553-4	chr17	71300475	71300675	+	975.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357337, intron 2 of 7)	intron (NM_001357337, intron 2 of 7)	10436.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	2.23778793217287	2.76913152341779	2.29163263953221	2.06860428023561	2.66845789706739	3.08631522658537	3.40539063753964	1.68274867655705	0.976039614357951	0.228837158469935	0.722016539443097
Merged-chr17-45718650-2	chr17	45718550	45718750	+	818.875	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15194.0	NM_028164	72240.0	Mm.482897	NM_028164	ENSMUSG00000094690	1600014C23Rik	-	RIKEN cDNA 1600014C23 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-23435349-7	chr5	23435194	23435394	+	987.142883	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040469)	promoter-TSS (NR_040469)	865.0	NM_026984	69188.0	Mm.205190	NM_026984	ENSMUSG00000029004	Kmt2e	1810033J14Rik|9530077A04Rik|D230038D11Rik|Mll5|NKp44L	lysine (K)-specific methyltransferase 2E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-25993212-2	chr8	25993112	25993312	+	934.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029037, intron 1 of 4)	B3|SINE|B2	909.0	NM_029037	74653.0	Mm.17631	NM_029037	ENSMUSG00000037251	Pomk	4930444A02Rik|Sgk196	protein-O-mannose kinase	protein-coding	-1.50561175621786	-1.47331375025452	-1.02203377115094	-1.49110398925286	-1.50334449591826	-1.47119716082604	-1.48086985756939	-1.48966786617048	-2.07776723614574	0.550394407909386	1
Merged-chr17-50522657-3	chr17	50522536	50522736	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013880, intron 1 of 5)	intron (NM_013880, intron 1 of 5)	13089.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	0.312307798383895	0.328460446852763	0.323121299321576	0.319033294035678	0.838078025290992	0.329670241491469	0.856577236782936	1.04185634381078	4.39478745477874	0.0261145093667333	1
Merged-chr14-46790520-2	chr14	46790420	46790620	+	966.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-2163.0	NM_009919	12793.0	Mm.3261	NM_009919	ENSMUSG00000015759	Cnih1	0610007J15|CNIH-1|Cnih	cornichon family AMPA receptor auxiliary protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-118263570-4	chr2	118263489	118263689	+	994.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6623.0	NM_027759	71313.0	Mm.85046	NM_027759	ENSMUSG00000027344	Fsip1	1700012M13Rik|4933432K11Rik	fibrous sheath-interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-94955181-2	chr3	94955121	94955321	+	741.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355705, intron 2 of 9)	intron (NM_001355705, intron 2 of 9)	705.0	NM_001355705	53970.0	Mm.24308	NM_017395	ENSMUSG00000005774	Rfx5	-	regulatory factor X, 5 (influences HLA class II expression)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-63365822-2	chr4	63365722	63365922	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_011016)	TTS (NM_011016)	3373.0	NM_011016	18406.0	Mm.14173	NM_011016	ENSMUSG00000061540	Orm2	Agp1|Orm-2	orosomucoid 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-102887681-2	chr13	102887581	102887781	+	728.599976	f1_balb.idr|f1_c57bl6.idr	intron (NM_175171, intron 4 of 28)	B1_Mur1|SINE|Alu	127426.0	NR_130171	76624.0	Mm.426384	NR_130171	ENSMUSG00000091906	1700099I09Rik	-	RIKEN cDNA 1700099I09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-25026045-2	chr16	25025945	25026145	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-33594.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81236276-2	chr10	81236176	81236376	+	559.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001034895, intron 1 of 17)	MTC|LTR|ERVL-MaLR	3113.0	NM_001034895	103406.0	Mm.158783	NM_001034895	ENSMUSG00000034949	Zfr2	2010013I23Rik|9130206N08Rik|AW045600|mKIAA1086	zinc finger RNA binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128371235-2	chr10	128371135	128371335	+	799.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1198.0	NM_001081040	210582.0	Mm.296876	NM_001081040	ENSMUSG00000039914	Coq10a	Gm1	coenzyme Q10A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-97824133-4	chr15	97824038	97824238	+	895.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001204280, intron 1 of 21)	intron (NM_001204280, intron 1 of 21)	7629.0	NM_019572	56233.0	Mm.384027	NM_019572	ENSMUSG00000022475	Hdac7	5830434K02Rik|HD7|HD7a|Hdac7a|mFLJ00062	histone deacetylase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-105714356-2	chr3	105714233	105714433	+	597.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163356, intron 1 of 1)	intron (NM_001163356, intron 1 of 1)	8875.0	NM_001163356	109050.0	Mm.212591	NM_175398	ENSMUSG00000048458	Fam212b	6530418L21Rik|inka2	family with sequence similarity 212, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-91167074-4	chr10	91166973	91167173	+	813.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080129, intron 1 of 8)	B3|SINE|B2	3477.0	NM_001283048	21917.0	Mm.159684	NM_011605	ENSMUSG00000019961	Tmpo	5630400D24Rik|AI195756|AI606875|AW214352|AW547477|LAP2|TP	thymopoietin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-4686254-3	chr6	4686183	4686383	+	740.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001130188, intron 10 of 11)	intron (NM_001130188, intron 10 of 11)	60921.0	NM_001130188	20392.0	Mm.8739	NM_011360	ENSMUSG00000004631	Sgce	e-SG	sarcoglycan, epsilon	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-35532259-3	chr12	35532130	35532330	+	938.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001314027, intron 1 of 9)	intron (NM_001314027, intron 1 of 9)	2759.0	NM_013464	11622.0	Mm.341377	NM_013464	ENSMUSG00000019256	Ahr	Ah|Ahh|Ahre|In|bHLHe76	aryl-hydrocarbon receptor	protein-coding	-1.13799161856527	-1.11509962161431	-1.12611682695956	-0.600839935108385	-0.990754861597232	-1.11271214725662	-1.12362277315966	-1.13354676675577	-1.63747442377455	0.616904426498488	1
Merged-chr13-95892100-4	chr13	95891969	95892169	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027711)	promoter-TSS (NM_027711)	-147.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46310139-1	chr19	46310039	46310239	+	587.0	f1_c57bl6.idr	intron (NM_019408, intron 15 of 21)	intron (NM_019408, intron 15 of 21)	4209.0	NM_001177370	18034.0	Mm.102365	NM_019408	ENSMUSG00000025225	Nfkb2	NF-kappaB2|lyt|p49|p49/p100|p50B|p52	nuclear factor of kappa light polypeptide gene enhancer in B cells 2, p49/p100	protein-coding	0.736574188635272	1.7212125860946	1.11966135900238	1.20263146185737	1.13545549624267	0.602692816208855	0.590587033607488	0.580091775115838	-2.27835173120489	0.147241331289399	0.597466522728415
Merged-chr4-116666892-4	chr4	116666768	116666968	+	907.841675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-15194.0	NM_021473	58810.0	Mm.30085	NM_021473	ENSMUSG00000028692	Akr1a1	2610201A18Rik|Akr1a4	aldo-keto reductase family 1, member A1 (aldehyde reductase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4871052-2	chr16	4870952	4871152	+	866.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8799.0	NM_145359	207740.0	Mm.268895	NM_145359	ENSMUSG00000039568	Ubald1	1500031H01Rik|BC013706|Fam100a	UBA-like domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-119808578-2	chr13	119808478	119808678	+	766.875	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-17456.0	NM_001302550	72465.0	Mm.139115	NM_028245	ENSMUSG00000094870	Zfp131	2610109I01Rik|AW558871|Znf131	zinc finger protein 131	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-90654607-2	chr5	90654512	90654712	+	945.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14085.0	NM_001310656	73246.0	Mm.30172	NM_028478	ENSMUSG00000029370	Rassf6	1600016B17Rik	Ras association (RalGDS/AF-6) domain family member 6	protein-coding	1.87650957525981	1.12708984419347	1.10620577804792	2.07633089055219	1.56177602920794	1.89056274506852	2.05822154675798	1.99198693715133	0.741104973411791	0.514768298935972	0.947017304411256
Merged-chr11-8605985-4	chr11	8605948	8606148	+	886.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 2 of 30)	intron (NM_001083587, intron 2 of 30)	58487.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-75071369-5	chr9	75071266	75071466	+	882.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010864, exon 1 of 41)	5' UTR (NM_010864, exon 1 of 41)	160.0	NM_010864	17918.0	Mm.3645	NM_010864	ENSMUSG00000034593	Myo5a	9630007J19Rik|AI413174|AI661011|Dbv|MVa|Myo5|MyoVA|Sev-1|d|d-120J|flail|flr	myosin VA	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55091339-2	chr19	55091239	55091439	+	606.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008149, intron 4 of 20)	intron (NM_008149, intron 4 of 20)	8138.0	NM_008149	14732.0	Mm.210196	NM_008149	ENSMUSG00000024978	Gpam	GPAT|GPAT-1|GPAT1|P90	glycerol-3-phosphate acyltransferase, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-22440807-2	chr16	22440707	22440907	+	584.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1237.0	NM_023794	104156.0	Mm.155708	NM_023794	ENSMUSG00000013089	Etv5	1110005E01Rik|8430401F14Rik|ERM	ets variant 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117053177-2	chr8	117053077	117053277	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029686, intron 14 of 42)	B1F|SINE|Alu	29272.0	NM_029686	76645.0	Mm.159753	NM_029686	ENSMUSG00000034416	Pkd1l2	1700126L06Rik	polycystic kidney disease 1 like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-34709773-3	chr13	34709680	34709880	+	960.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29862.0	NM_138746	108161.0	Mm.41991	NM_138746	ENSMUSG00000038246	Fam50b	D0H6S2654E|X5L|XAP-5-like	family with sequence similarity 50, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81498709-2	chr10	81498609	81498809	+	853.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_010102, exon 1 of 1)	exon (NM_010102, exon 1 of 1)	1428.0	NM_010102	13611.0	Mm.33065	NM_010102	ENSMUSG00000044199	S1pr4	Edg6|Lpc1|S1p4	sphingosine-1-phosphate receptor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-84881745-4	chr1	84881652	84881852	+	940.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025386, intron 2 of 3)	RMER15|LTR|ERVL	41911.0	NM_025386	66153.0	Mm.381192	NM_025386	ENSMUSG00000073633	Fbxo36	0610008D19Rik|1110020F21Rik|2410002G19Rik|D1Ertd757e	F-box protein 36	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-48513468-4	chr13	48513356	48513556	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164575)	promoter-TSS (NM_001164575)	-20.0	NM_001164576	67911.0	Mm.251375	NM_026450	ENSMUSG00000050954	Zfp169	1700025J14Rik|4930429A13Rik|BE688704	zinc finger protein 169	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6970363-2	chr19	6970263	6970463	+	636.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008874)	promoter-TSS (NM_008874)	-549.0	NM_001290349	18797.0	Mm.273204	NM_008874	ENSMUSG00000024960	Plcb3	mKIAA4098	phospholipase C, beta 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-60933042-4	chr10	60932939	60933139	+	938.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033616, intron 1 of 2)	intron (NR_033616, intron 1 of 2)	5093.0	NR_033616	73616.0	Mm.159038	NR_033616	ENSMUSG00000037247	Pldi	1700125F08Rik|Poldi	polymorphic derived intron containing	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111760845-1	chr12	111760745	111760945	+	544.0	f1_balb.idr	intron (NM_001361610, intron 1 of 14)	intron (NM_001361610, intron 1 of 14)	1977.0	NM_001025361	16593.0	Mm.278357	NM_008450	ENSMUSG00000021288	Klc1	AI874768|Kns2	kinesin light chain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3904795-2	chr12	3904695	3904895	+	795.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153743, intron 15 of 17)	intron (NM_153743, intron 15 of 17)	13051.0	NM_153743	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126929695-4	chr8	126929600	126929800	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_024214)	TTS (NM_024214)	16221.0	NM_024214	67952.0	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-17222373-4	chr16	17222269	17222469	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	-11218.0	NM_178922	58180.0	Mm.261602	NM_178922	ENSMUSG00000050240	Hic2	AA409108|HRG22|mKIAA1020	hypermethylated in cancer 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-54697258-1	chr12	54697158	54697358	+	1000.0	f1_c57bl6.idr	Intergenic	Intergenic	-1364.0	NM_025456	66266.0	Mm.156440	NM_025456	ENSMUSG00000054302	Eapp	1810011O16Rik	E2F-associated phosphoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-11282197-2	chr16	11282097	11282297	+	748.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	-27752.0	NR_035466	100316833.0		NR_035466	ENSMUSG00000088544	Mir1945	mir-1945|mmu-mir-1945	microRNA 1945	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69758263-2	chr11	69758153	69758353	+	1000.0	f0_balb.idr|f0_c57.idr	5' UTR (NM_001291068, exon 1 of 29)	5' UTR (NM_001291068, exon 1 of 29)	380.0	NM_001291068	20020.0	Mm.16533	NM_009089	ENSMUSG00000005198	Polr2a	220kDa|Rpb1|Rpo2-1	polymerase (RNA) II (DNA directed) polypeptide A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-121970157-1	chr5	121970057	121970257	+	565.0	f0_balb.idr	intron (NM_007804, intron 2 of 22)	intron (NM_007804, intron 2 of 22)	77668.0	NM_007804	13048.0	Mm.156172	NM_007804	ENSMUSG00000042589	Cux2	1700051K22Rik|Cutl2|Cux-2	cut-like homeobox 2	protein-coding	1.8415739243179	1.24064880128182	2.46798662897392	1.18652599300827	1.98139799335707	2.09522992724785	2.99869399693566	2.20520660984763	1.41177213812618	0.172536768470235	0.640477311274911
Merged-chr3-53522923-3	chr3	53522826	53523026	+	706.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172862, intron 18 of 23)	intron (NM_172862, intron 18 of 23)	34133.0	NM_153156	229277.0	Mm.222810	NM_153156	ENSMUSG00000027744	Stoml3	Epb7.2l|SLP3|sro	stomatin (Epb7.2)-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-74215540-1	chr18	74215440	74215640	+	662.0	f1_c57bl6.idr	promoter-TSS (NM_028868)	promoter-TSS (NM_028868)	-672.0	NM_028868	74322.0	Mm.17537	NM_028868	ENSMUSG00000024560	Cxxc1	2410002I16Rik|5830420C16Rik|AI426635|Cfp1|Cgbp|PHF18	CXXC finger 1 (PHD domain)	protein-coding	0.922341297974463	1.22342574615226	0.298842595596241	1.10342097186633	0.281260116847367	0.310179272325326	0.300896246799677	0.292879905808359	-4.49520836958515	0.0183708984307998	1
Merged-chr17-80729325-2	chr17	80729225	80729425	+	997.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1300.0	NM_001290345	225028.0	Mm.311948	NM_001081357	ENSMUSG00000024242	Map4k3	4833416M01Rik|4833416M07Rik|9530052P13Rik|Glk|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1	mitogen-activated protein kinase kinase kinase kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-83215355-2	chr10	83215255	83215455	+	600.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1C|Other|Other	122462.0	NM_177388	338365.0	Mm.67073	NM_177388	ENSMUSG00000034591	Slc41a2	A230035L05Rik|SLC41A1-L1	solute carrier family 41, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111462403-3	chr12	111462289	111462489	+	942.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	19728.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-79257124-4	chr2	79257038	79257238	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010576, intron 2 of 27)	intron (NM_010576, intron 2 of 27)	1712.0	NM_010576	16401.0	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-58928484-4	chr11	58928394	58928594	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10412.0	NM_022423	108660.0	Mm.249986	NM_022423	ENSMUSG00000020496	Rnf187	2410016F01Rik|AB030190|RACO-1	ring finger protein 187	protein-coding	6.95459150251306	6.56894799045943	6.59190419409177	6.46580966006505	6.37015000865448	6.15764725948389	5.80318068206024	5.984327785401	-0.608035962835658	0.00521928801389065	0.0690165513490008
Merged-chr6-86849374-4	chr6	86849280	86849480	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028298)	promoter-TSS (NR_028298)	60.0	NR_028298	67170.0	Mm.119489	NR_028298	ENSMUSG00000100164	2610306M01Rik	-	RIKEN cDNA 2610306M01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-25165853-4	chr12	25165773	25165973	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36699.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	1.7256445824834	2.15909906220641	1.36928659931512	2.93797156838786	1.9209788628593	3.38350743014509	2.87421155424573	3.2958874073793	1.50996136933626	0.0846288626761039	0.446908932389038
Merged-chr4-6373903-6	chr4	6373766	6373966	+	843.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001098227, intron 1 of 8)	MLT1A0|LTR|ERVL-MaLR	8186.0	NM_001098227	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-90223527-3	chr16	90223361	90223561	+	749.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011434, intron 2 of 4)	intron (NM_011434, intron 2 of 4)	2719.0	NM_011434	20655.0	Mm.276325	NM_011434	ENSMUSG00000022982	Sod1	B430204E11Rik|Cu/Zn-SOD|CuZnSOD|Ipo-1|Ipo1|SODC|Sod-1	superoxide dismutase 1, soluble	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-60993089-5	chr8	60992976	60993176	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001293637)	promoter-TSS (NM_001293637)	-117.0	NM_001293637	18004.0	Mm.486881	NM_175089	ENSMUSG00000031644	Nek1	D8Ertd790e|kat	NIMA (never in mitosis gene a)-related expressed kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-12007072-2	chr19	12006972	12007172	+	721.900024	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29668.0	NM_146680	258675.0	Mm.271517	NM_146680	ENSMUSG00000067529	Olfr1423	MOR239-3	olfactory receptor 1423	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-44987074-2	chr14	44986974	44987174	+	820.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER115|DNA|hAT-Tip100	-1037.0	NM_008964	19217.0	Mm.4630	NM_008964	ENSMUSG00000037759	Ptger2	EP2|Ptgerep2	prostaglandin E receptor 2 (subtype EP2)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153110635-1	chr2	153110535	153110735	+	545.0	f1_balb.idr	intron (NM_001172117, intron 1 of 12)	MER5A|DNA|hAT-Charlie	2167.0	NM_010407	15162.0	Mm.715	NM_010407	ENSMUSG00000003283	Hck	AI849071|Bmk	hemopoietic cell kinase	protein-coding	0.432251780713527	1.13101616602902	0.444948471606984	0.440153100794517	0.689551188073758	0.795815634383992	0.446324203509252	1.1927151844237	0.921958701319625	0.613630507419046	1
Merged-chr15-99120456-2	chr15	99120356	99120556	+	644.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17D2|LTR|ERVK	-6389.0	NM_139140	72572.0	Mm.276650	NM_139140	ENSMUSG00000051934	Spats2	2700012F11Rik|59kDa|Scr59|p59	spermatogenesis associated, serine-rich 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-193888200-3	chr1	193888102	193888302	+	807.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14|LTR|ERV1	334557.0	NR_040477	74942.0	Mm.60689	NR_040477	ENSMUSG00000103692	4930503O07Rik	-	RIKEN cDNA 4930503O07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-75685612-4	chr2	75685498	75685698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010902, intron 1 of 4)	intron (NM_010902, intron 1 of 4)	19065.0	NR_132727	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-77464698-2	chr11	77464598	77464798	+	986.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_139129, intron 1 of 8)	intron (NM_139129, intron 1 of 8)	785.0	NM_139130	216961.0	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-146203891-1	chr3	146203791	146203991	+	542.0	f1_c57bl6.idr	Intergenic	Intergenic	-17070.0	NM_022983	65086.0	Mm.155520	NM_022983	ENSMUSG00000036832	Lpar3	Edg7|lpA3	lysophosphatidic acid receptor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141469932-2	chr4	141469817	141470017	+	778.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_019763, exon 14 of 16)	exon (NM_019763, exon 14 of 16)	25244.0	NM_009541	22642.0	Mm.389590	NM_009541	ENSMUSG00000006215	Zbtb17	AA589413|Lp-1|Miz1|Zfp100|mZ13	zinc finger and BTB domain containing 17	protein-coding	-1.06997269762433	-1.30473905204845	-1.3145270772132	-1.32256725251374	-1.06385251204029	-1.30261794616352	-1.3123112828633	-1.32112806497905	0.0394047164033882	0.991001358494878	1
Merged-chr1-9967624-7	chr1	9967570	9967770	+	870.9285890000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285425)	promoter-TSS (NM_001285425)	-185.0	NM_001285425	100039596.0	Mm.412928	NM_001285425	ENSMUSG00000099032	Tcf24	Gm10567|Gm2330	transcription factor 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43382775-1	chr4	43382675	43382875	+	544.0	f1_balb.idr	intron (NM_001037709, intron 1 of 11)	intron (NM_001037709, intron 1 of 11)	793.0	NM_001037709	100213.0	Mm.235730	NM_199057	ENSMUSG00000035969	Rusc2	AI840675|mKIAA0375	RUN and SH3 domain containing 2	protein-coding	3.28072037081459	2.85263685506998	2.98118456490633	3.45233667961638	2.55033060060171	1.9601079586954	3.9103737498063	2.55670345879305	-0.317843558415354	0.66135642539412	0.990963966817159
Merged-chr9-121284674-3	chr9	121284580	121284780	+	769.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7508.0	NM_177589	209012.0	Mm.371804	NM_177589	ENSMUSG00000040936	Ulk4	4932415A06Rik|A730098P15	unc-51-like kinase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70489839-4	chr11	70489720	70489920	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15454.0	NM_029360	75604.0	Mm.24400	NM_029360	ENSMUSG00000018919	Tm4sf5	2010003F10Rik|AI323987	transmembrane 4 superfamily member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-110771081-4	chr12	110770963	110771163	+	906.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347428, intron 1 of 2)	ORR1A4|LTR|ERVL-MaLR	33131.0	NM_001347428	69641.0	Mm.475762	NM_027149	ENSMUSG00000037957	Wdr20	2310040A13Rik|AI549910|Wdr20a	WD repeat domain 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-110117001-3	chr7	110116900	110117100	+	889.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5059.0	NM_001355058	22390.0	Mm.287173	NM_009516	ENSMUSG00000031016	Wee1	Wee1A	WEE 1 homolog 1 (S. pombe)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-90227670-4	chr11	90227553	90227753	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21823.0	NM_026178	67468.0	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44384631-4	chr7	44384537	44384737	+	793.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016663, intron 1 of 10)	intron (NM_016663, intron 1 of 10)	511.0	NM_016663	20981.0	Mm.4824	NM_016663	ENSMUSG00000030731	Syt3	AI385753|sytIII	synaptotagmin III	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-47651617-4	chr9	47651526	47651726	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	121274.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	2.50080486235867	1.7297875270691	3.77166437073628	2.50567465568812	3.85578051679268	4.12905031312286	4.84198459111045	4.04398412973121	2.09254632296458	0.000817752448308147	0.0164805048288933
Merged-chr4-74297113-4	chr4	74296996	74297196	+	953.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356561, intron 3 of 20)	intron (NM_001356561, intron 3 of 20)	45217.0	NM_001356561	76804.0	Mm.209059	NM_144787	ENSMUSG00000028397	Kdm4c	2410141F18Rik|AA517467|Gasc1|Jmjd2c	lysine (K)-specific demethylase 4C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-25190570-4	chr12	25190505	25190705	+	733.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61431.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129602068-4	chr2	129601960	129602160	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355160, intron 1 of 7)	intron (NM_001355160, intron 1 of 7)	6598.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	2.44599623911042	3.02285314905215	2.18141848568272	1.96380839060377	1.70861220052558	1.3992234684353	3.08917871945428	2.68814859540743	-0.105820957646145	0.90873879221833	0.998431161219273
Merged-chr15-65476727-1	chr15	65476627	65476827	+	590.0	f1_balb.idr	Intergenic	Lx2B|LINE|L1	-310293.0	NM_133766	76740.0	Mm.260647	NM_133766	ENSMUSG00000015002	Efr3a	A130089M23Rik|BB071175|C76891|C920006C10Rik|D030063F01Rik|mKIAA0143	EFR3 homolog A	protein-coding	-2.18138529563533	-2.15523716995652	-2.1631445789866	-2.16963996020037	-2.05513010215571	-2.15352360143315	-2.16135451490766	-2.16847729006863	0.759018020146679	0.829933115115583	1
Merged-chr18-74962298-4	chr18	74962117	74962317	+	809.270813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010720)	promoter-TSS (NM_010720)	-954.0	NM_010720	16891.0	Mm.299647	NM_010720	ENSMUSG00000053846	Lipg	3110013K01Rik|EL|lipase|mEDL	lipase, endothelial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-45194480-4	chr2	45194353	45194553	+	970.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-77011.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167907880-2	chr2	167907780	167907980	+	656.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24447.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25827394-4	chr7	25827292	25827492	+	883.974976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10862.0	NM_028775	74134.0	Mm.275188	NM_028775	ENSMUSG00000040703	Cyp2s1	1200011C15Rik|AU041727|C79779	cytochrome P450, family 2, subfamily s, polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4856340-3	chr19	4856239	4856439	+	922.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019861, intron 4 of 13)	intron (NM_019861, intron 4 of 13)	1210.0	NM_019861	56464.0	Mm.29561	NM_019861	ENSMUSG00000083282	Ctsf	AI481912	cathepsin F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-137688318-2	chr6	137688218	137688418	+	687.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39033.0	NM_007945	13860.0	Mm.235346	NM_007945	ENSMUSG00000015766	Eps8	AW261790	epidermal growth factor receptor pathway substrate 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-79877368-4	chr11	79877263	79877463	+	887.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	85024.0	NM_144826	216987.0	Mm.274961	NM_144826	ENSMUSG00000035575	Utp6	4732497O03Rik|HCA66	UTP6 small subunit processome component	protein-coding	-1.8418762459921	-1.8125357239735	-1.82140854000656	-1.82869693527674	-1.56059678980999	-1.8106129477253	-1.81939992894326	-1.82739231600805	1.3620893379502	0.699511506488145	1
Merged-chr2-60124841-4	chr2	60124741	60124941	+	975.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001182, intron 1 of 35)	intron (NM_001001182, intron 1 of 35)	899.0	NM_001001182	407823.0	Mm.228071	NM_001001182	ENSMUSG00000026987	Baz2b	5830435C13Rik|BC053917|D2Ertd794e	bromodomain adjacent to zinc finger domain, 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-31428919-2	chr16	31428819	31429019	+	903.166626	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_152205, exon 1 of 1)	non-coding (NR_152205, exon 1 of 1)	166.0	NM_001122683	71911.0	Mm.293470	NM_175177	ENSMUSG00000046598	Bdh1	2310032J20Rik|AI327223|Bdh	3-hydroxybutyrate dehydrogenase, type 1	protein-coding	0.685262750860257	0.341540969583565	0.885385491777716	0.488799166118477	0.693801744822581	0.342975670985374	0.336583653350309	0.853227221349283	-0.23328681595406	0.895837605364854	1
Merged-chr6-117124972-2	chr6	117124872	117125072	+	793.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43563.0	NM_001012477	20315.0	Mm.303231	NM_013655	ENSMUSG00000061353	Cxcl12	Pbsf|Scyb12|Sdf1|Tlsf|Tpar1	chemokine (C-X-C motif) ligand 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-121807776-1	chr2	121807676	121807876	+	732.0	f1_c57bl6.idr	promoter-TSS (NM_172673)	promoter-TSS (NM_172673)	-719.0	NM_172673	228564.0	Mm.121514	NM_172673	ENSMUSG00000027238	Frmd5	1500032A09Rik|A930004K21Rik|R75430	FERM domain containing 5	protein-coding	0.457052253255216	1.42997420913092	0.480900986869699	1.39650570334211	0.459304429054098	1.07615238067903	0.483412682783019	0.840084699161997	-1.32439195724354	0.442893426654824	0.911647291190116
Merged-chr16-4586790-4	chr16	4586685	4586885	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-7928.0	NM_031184	83396.0	Mm.134072	NM_031184	ENSMUSG00000014303	Glis2	Gli5|Klf16|Nkl	GLIS family zinc finger 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24142300-2	chr17	24142218	24142418	+	747.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011062)	promoter-TSS (NM_011062)	-724.0	NM_001080773	18607.0	Mm.10504	NM_011062	ENSMUSG00000024122	Pdpk1	Pdk1	3-phosphoinositide dependent protein kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-12288067-2	chr12	12287967	12288167	+	763.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029758, intron 2 of 12)	intron (NM_029758, intron 2 of 12)	25928.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-34683156-2	chr5	34683056	34683256	+	636.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080743, intron 4 of 5)	L1VL4|LINE|L1	22777.0	NM_019497	14772.0	Mm.117076	NM_019497	ENSMUSG00000052783	Grk4	A830025H08Rik|GRK|Gprk2l|Gprk4	G protein-coupled receptor kinase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118146552-4	chr11	118146437	118146637	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17318.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-28864804-4	chr6	28864742	28864942	+	978.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019776, intron 16 of 23)	intron (NM_019776, intron 16 of 23)	-33095.0	NM_138682	192198.0	Mm.443660	NM_138682	ENSMUSG00000049939	Lrrc4	MBAG1|NGL-2|NGL2|NLG-2|Nag14	leucine rich repeat containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-25549095-2	chr2	25548995	25549195	+	881.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2155.0	NM_009422	22030.0	Mm.3399	NM_009422	ENSMUSG00000026942	Traf2	AI325259	TNF receptor-associated factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-70991954-4	chr12	70991868	70992068	+	964.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045055, exon 4 of 4)	non-coding (NR_045055, exon 4 of 4)	17345.0	NM_011184	19167.0	Mm.296338	NM_011184	ENSMUSG00000060073	Psma3	Lmpc8	proteasome (prosome, macropain) subunit, alpha type 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-123462000-4	chr9	123461909	123462109	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001348167, exon 21 of 21)	3' UTR (NM_001348167, exon 21 of 21)	-16692.0	NM_013860	29806.0	Mm.10987	NM_013860	ENSMUSG00000025239	Limd1	AW822033|D9Ertd192e	LIM domains containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-96376730-4	chr10	96376626	96376826	+	778.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	150519.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111157838-3	chr12	111157736	111157936	+	859.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8534.0	NM_001286122	22031.0	Mm.27431	NM_011632	ENSMUSG00000021277	Traf3	AI528849|CAP-1|CD40bp|CRAF1|LAP1|T-BAM|amn	TNF receptor-associated factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-20233729-2	chr12	20233629	20233829	+	798.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	MMERGLN-int|LTR|ERV1	582050.0	NR_015521	69513.0	Mm.273972	NR_015521	ENSMUSG00000099759	1700030C10Rik	-	RIKEN cDNA 1700030C10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-30942642-2	chr16	30942542	30942742	+	586.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	138790.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-73468700-2	chr13	73468600	73468800	+	554.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145376, intron 1 of 13)	intron (NM_145376, intron 1 of 13)	1317.0	NM_145376	210992.0	Mm.284649	NM_145376	ENSMUSG00000021608	Lpcat1	2900035H07Rik|Aytl2|BB137372|BC005662|C87117|LPCAT|rd11	lysophosphatidylcholine acyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-35125505-2	chr9	35125405	35125605	+	569.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027030, intron 5 of 5)	intron (NM_027030, intron 5 of 5)	-8641.0	NM_009178	20443.0	Mm.275973	NM_009178	ENSMUSG00000032038	St3gal4	SIAT4-C|ST3Gal IV|ST3GalIV|Siat4c	ST3 beta-galactoside alpha-2,3-sialyltransferase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34307198-3	chr17	34307116	34307316	+	898.9111330000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010382, intron 1 of 5)	intron (NM_010382, intron 1 of 5)	1349.0	NM_010382	14969.0	Mm.22564	NM_010382	ENSMUSG00000060586	H2-Eb1	Eb|H-2Eb|H2Eb|Ia-4|Ia4	histocompatibility 2, class II antigen E beta	protein-coding	3.83111839814824	3.83717358128045	2.65880507389832	3.74307621965739	3.70351188137692	4.34087373647621	2.83689741078701	2.99967182820302	0.0140320773766641	0.981346282958741	0.998431161219273
Merged-chr15-59249018-3	chr15	59248920	59249120	+	819.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57928.0	NR_045613	100416830.0	Mm.490788	NR_045613	ENSMUSG00000098528	Zfp572	4930472F24Rik	zinc finger protein 572	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-145720335-4	chr2	145720235	145720435	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033220, intron 2 of 3)	intron (NR_033220, intron 2 of 3)	19140.0	NR_033220	408057.0	Mm.486711	NR_033220	ENSMUSG00000087594	BC039771	-	cDNA sequence BC039771	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53196175-4	chr4	53196095	53196295	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36300.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-88503880-1	chr4	88503780	88503980	+	568.0	f0_balb.idr	Intergenic	Intergenic	18914.0	NM_010510	15977.0	Mm.1245	NM_010510	ENSMUSG00000048806	Ifnb1	IFN-beta|IFNB|Ifb	interferon beta 1, fibroblast	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-58194055-4	chr19	58193963	58194163	+	812.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-102141.0	NR_040449	791347.0	Mm.452208	NR_040449		Gm10007	-	predicted gene 10007	ncRNA	3.96547273481224	3.18986664962634	3.7740432830144	3.9414983729315	3.89110442447683	4.80695526350621	3.72333723110456	4.13341554940339	0.608605176544154	0.207796745979469	0.696409317950188
Merged-chr7-25106006-4	chr7	25105902	25106102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163556, intron 5 of 13)	intron (NM_001163556, intron 5 of 13)	-8827.0	NR_105855	102465968.0		NR_105855	ENSMUSG00000098441	Mir6537	Gm27808|mmu-mir-6537	microRNA 6537	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-46546668-4	chr7	46546589	46546789	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013789, intron 9 of 10)	MTE2a|LTR|ERVL-MaLR	93118.0	NM_013789	27414.0	Mm.76659	NM_013789	ENSMUSG00000030839	Sergef	DelGEF|Gef|Gnef|Gnefr	secretion regulating guanine nucleotide exchange factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114962919-1	chr11	114962819	114963019	+	709.5	f1_c57bl6.idr	Intergenic	Intergenic	-2502.0	NM_199225	387565.0	Mm.351450	NM_199225	ENSMUSG00000058728	Cd300c	Clm6	CD300C molecule	protein-coding	1.82074607981149	1.17370961915768	1.7099243361962	1.75680800008555	1.08005596309595	1.18080784365194	0.934387790329376	1.66672860485587	-1.42553649873901	0.249440696709815	0.747698903845194
Merged-chr12-58267852-1	chr12	58267752	58267952	+	549.0	f1_c57bl6.idr	exon (NM_025809, exon 1 of 1)	exon (NM_025809, exon 1 of 1)	1406.0	NM_025809	66864.0	Mm.280563	NM_025809	ENSMUSG00000045930	Clec14a	1200003C23Rik|AI642649	C-type lectin domain family 14, member a	protein-coding	-0.279766752566392	-0.516503280649119	-0.094864277253511	-0.522188836265962	-0.170517417648006	-0.515775516329467	-0.519012263880502	-0.521758383904691	-0.90136442861195	0.734832158587182	1
Merged-chr12-32820996-6	chr12	32820833	32821033	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021524, intron 1 of 10)	CpG	598.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	3.16491332175566	3.54799572840405	3.72720358529188	3.15815910998654	2.43371724257813	3.57348531980275	3.88004040756605	3.43264649761543	0.00981219263829695	0.986778841789799	0.998431161219273
Merged-chr4-48407496-3	chr4	48407394	48407594	+	784.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001281978, intron 13 of 18)	B1_Mus1|SINE|Alu	65969.0	NM_172304	269536.0	Mm.272025	NM_172304	ENSMUSG00000028345	Tex10	2610206N19Rik|2810462N03Rik|BC006867	testis expressed gene 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-53378808-4	chr5	53378710	53378910	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	111704.0	NM_001145433	66278.0	Mm.27900	NM_001145433	ENSMUSG00000061461	Smim20	1110067B18Rik|1810013D10Rik|N28078	small integral membrane protein 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-27984098-4	chr3	27983989	27984189	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008875)	promoter-TSS (NM_008875)	-82.0	NM_008875	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-9897821-2	chr19	9897679	9897879	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016692, intron 1 of 17)	intron (NM_016692, intron 1 of 17)	1754.0	NM_016692	16319.0	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	0.413031243532633	1.84407510491006	0.467097693642612	0.447520249313937	0.418332845897057	2.59648084266004	0.47254489033062	1.3176128830939	1.5006222933313	0.647129353322619	0.984645499809534
Merged-chr7-125594059-4	chr7	125593938	125594138	+	932.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9391.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	1.87975921529796	2.86891762055624	1.49674839614195	2.44012988816719	1.75425274078174	1.27547941177356	2.86540912094622	1.99701558373802	-0.355284347809156	0.723189644495496	0.998431161219273
Merged-chr3-122292664-2	chr3	122292564	122292764	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_030439)	TTS (NR_030439)	1039.0	NR_030439	791077.0		NR_030439	ENSMUSG00000076456	Mir760	Mirn760|mir-760|mmu-mir-760	microRNA 760	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-91790499-2	chr12	91790399	91790599	+	596.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4063.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-12940223-2	chr17	12940123	12940323	+	648.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153151, intron 1 of 8)	intron (NM_153151, intron 1 of 8)	173.0	NM_153151	224530.0	Mm.490312	NM_153151	ENSMUSG00000062480	Acat3	ACTL	acetyl-Coenzyme A acetyltransferase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-115856491-2	chr4	115856391	115856591	+	594.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285487, intron 4 of 14)	intron (NM_001285487, intron 4 of 14)	17293.0	NM_001355174	17346.0	Mm.209327	NM_021461	ENSMUSG00000028708	Mknk1	2410048M24Rik|Mnk1	MAP kinase-interacting serine/threonine kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-103753564-4	chr5	103753457	103753657	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133919)	promoter-TSS (NM_133919)	-605.0	NM_133919	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16204976-3	chr7	16204875	16205075	+	866.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027883, intron 9 of 16)	intron (NM_027883, intron 9 of 16)	17018.0	NM_001285931	71723.0	Mm.75259	NM_027883	ENSMUSG00000006019	Dhx34	1200013B07Rik|1810012L18Rik|Ddx34|mKIAA0134	DEAH (Asp-Glu-Ala-His) box polypeptide 34	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-48336598-2	chr17	48336498	48336698	+	698.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	-9803.0	NM_031254	83433.0	Mm.261623	NM_031254	ENSMUSG00000023992	Trem2	TREM-2|Trem2a|Trem2b|Trem2c	triggering receptor expressed on myeloid cells 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-95884200-3	chr13	95884105	95884305	+	584.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027711, intron 1 of 35)	ORR1D2|LTR|ERVL-MaLR	7717.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	2.55736878827004	1.65188702869376	2.79822430325016	3.82150079154832	3.44003348318615	4.23254715181413	2.52513050456692	3.61173277880832	1.00000514285265	0.175107858454657	0.644197900369676
Merged-chr11-70009109-2	chr11	70009009	70009209	+	816.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007888, intron 14 of 14)	intron (NM_007888, intron 14 of 14)	-2934.0	NR_029758	723896.0		NR_029758	ENSMUSG00000065534	Mir324	Mirn324|mir-324|mmu-mir-324	microRNA 324	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-113673124-2	chr5	113673024	113673224	+	965.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-22734.0	NM_008153	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-33919596-4	chr17	33919522	33919722	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_020625)	TTS (NM_020625)	144.0	NM_009318	21356.0	Mm.154457	NM_009318	ENSMUSG00000024308	Tapbp	D17Wsu91e|TPN	TAP binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-15518036-4	chr19	15517939	15518139	+	926.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	406583.0	NM_001205339	107272.0	Mm.289936	NM_177420	ENSMUSG00000024640	Psat1	D8Ertd814e|EPIP|PSA|Psat	phosphoserine aminotransferase 1	protein-coding	-1.36015291771705	-1.32842431658676	-1.33874579108173	-1.34722415754512	-1.35969949349639	-1.32618761000664	-1.33640923549635	-0.791042329471244	2.42373733289067	0.484013421080845	1
Merged-chr13-113418319-4	chr13	113418219	113418419	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	84525.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-74934953-3	chr15	74934864	74935064	+	645.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	MERV1_I-int|LTR|ERV1	-20087.0	NM_001164039	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-81342463-4	chr8	81342356	81342556	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001297591)	promoter-TSS (NM_001297591)	-106.0	NM_001024617	234515.0	Mm.324468	NM_001024617	ENSMUSG00000037940	Inpp4b	E130107I17Rik	inositol polyphosphate-4-phosphatase, type II	protein-coding	3.68712871861018	4.2109596335447	3.59102598794564	3.74213213859117	4.72181584161806	4.2410708034946	5.1831668143908	4.75710630080261	1.23358563154954	0.00309873999657084	0.0463960263879247
Merged-chr17-5583250-2	chr17	5583150	5583350	+	694.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	90650.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-40744882-2	chr11	40744782	40744982	+	616.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	10404.0	NM_009831	12450.0	Mm.2103	NM_009831	ENSMUSG00000020326	Ccng1	AI314029	cyclin G1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-89634448-3	chr13	89634387	89634587	+	747.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	93851.0	NM_013500	12950.0	Mm.266790	NM_013500	ENSMUSG00000021613	Hapln1	BB099155|CLP|Crtl1|Crtl1l|LP|LP-1	hyaluronan and proteoglycan link protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-42272638-2	chr10	42272538	42272738	+	692.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019740, intron 2 of 3)	intron (NM_019740, intron 2 of 3)	4104.0	NM_019740	56484.0	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-44415305-4	chr13	44415260	44415460	+	980.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-24367.0	NR_045489	69491.0	Mm.392410	NR_045489	ENSMUSG00000098144	1700029N11Rik	-	RIKEN cDNA 1700029N11 gene	ncRNA	-0.289851946104314	-0.737899168765768	-0.740932179010924	-0.743264539078787	-0.280173431323445	-0.737213951634147	-0.740264187498491	-0.742857569821679	0.0418983010157508	0.98887086484455	1
Merged-chr4-99185170-1	chr4	99185070	99185270	+	612.0	f1_balb.idr	Intergenic	Intergenic	-8764.0	NM_175029	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	0.846920827176544	0.68784002721291	0.66523286300633	1.88636780221464	0.620290826302658	2.40216736331356	0.670303565877781	1.89893413043213	1.41205460227661	0.560629250469312	0.960350977191929
Merged-chr4-32563762-2	chr4	32563662	32563862	+	981.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001109661, intron 3 of 4)	MTC|LTR|ERVL-MaLR	7900.0	NR_026843	414068.0	Mm.389550	NR_026843	ENSMUSG00000086150	Bach2os	-	BTB and CNC homology 2, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-8429213-3	chr4	8429111	8429311	+	693.200012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-106433.0	NM_021518	59021.0	Mm.397471	NM_021518	ENSMUSG00000047187	Rab2a	9330148M11Rik|C80220|Rab2	RAB2A, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-39011939-3	chr13	39011837	39012037	+	915.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR41B|LTR|ERVL	-51062.0	NM_001170431	108652.0	Mm.255506	NM_134060	ENSMUSG00000021432	Slc35b3	4921526O06Rik|AI428480|CGI-19|PABST2|PAPST2	solute carrier family 35, member B3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117479919-2	chr8	117479819	117480019	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19C|LTR|ERVK	-18356.0	NM_172285	234779.0	Mm.192699	NM_172285	ENSMUSG00000034330	Plcg2	PLC-gamma-2|PLCgamma2|Plcg-2	phospholipase C, gamma 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-115001310-2	chr7	115001209	115001409	+	789.75	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	50035.0	NR_040319	101786.0	Mm.395157	NR_040317	ENSMUSG00000108379	A730082K24Rik	AU044236	RIKEN cDNA A730082K24 gene	ncRNA	1.45405669923258	1.25723109195506	0.856757027329415	1.43521174627105	1.63686772017791	1.26623517958029	0.859554591002394	1.44314300011911	0.24979316468849	0.851248286296931	0.998431161219273
Merged-chr14-30614641-1	chr14	30614541	30614741	+	735.0	f1_balb.idr	intron (NM_011103, intron 1 of 17)	intron (NM_011103, intron 1 of 17)	-4331.0	NM_001310682	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	2.7201941505303	3.2197926551501	2.6376508495902	3.35852553442954	2.33620720509051	2.61942006746242	2.23121878587047	2.31820621253203	-1.27576962011956	0.0756120148124838	0.416758318924815
Merged-chr3-146109114-1	chr3	146109014	146109214	+	591.0	f0_balb.idr	Intergenic	B4|SINE|B4	-1078.0	NM_172864	242253.0	Mm.235040	NM_172864	ENSMUSG00000043020	Wdr63	4931433A13Rik|IC140|Ida7	WD repeat domain 63	protein-coding	0.947403969209403	0.318489466662897	0.886938989856826	0.306051823913332	0.575593424226479	0.320067846770594	0.313024614789888	0.853614818376728	-0.690254931073151	0.715568482587547	1
Merged-chr6-33405698-2	chr6	33405598	33405798	+	862.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347089, intron 7 of 9)	intron (NM_001347089, intron 7 of 9)	156570.0	NM_001347089	20336.0	Mm.265512	NM_009148	ENSMUSG00000029763	Exoc4	C78892|Sec8|Sec8l1	exocyst complex component 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-70873608-2	chr17	70873603	70873803	+	824.625	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13103.0	NR_035427	100316676.0		NR_035427	ENSMUSG00000080468	Mir1195	Mirn1195|mmu-mir-1195	microRNA 1195	ncRNA	-0.711713561034065	-0.721883571325813	-1.07191524228021	-1.07790974157835	-1.08061855601154	-1.05832924914531	-1.06938745358593	-1.07757418096765	-2.67595575402854	0.401150602523657	1
Merged-chr7-16782153-3	chr7	16781981	16782181	+	950.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009201, exon 1 of 9)	exon (NM_009201, exon 1 of 9)	735.0	NM_009201	20514.0	Mm.1056	NM_009201	ENSMUSG00000001918	Slc1a5	AAAT|ASCT2|ATBO|M7V1|M7VS1|R16|RDRC|Slc1a7	solute carrier family 1 (neutral amino acid transporter), member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84893903-4	chr8	84893783	84893983	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008097)	promoter-TSS (NM_008097)	38.0	NM_001044744	270076.0	Mm.2475	NM_008097	ENSMUSG00000003809	Gcdh	9030411L18|AI266902|D17825|GCD	glutaryl-Coenzyme A dehydrogenase	protein-coding	6.00644328771071	5.66813949972026	5.82101128271611	6.79280922127663	6.23433551082412	5.87312691099043	5.99430990463229	6.58820265920554	0.0590725563353647	0.83132398218233	0.998431161219273
Merged-chr6-108553645-2	chr6	108553545	108553745	+	639.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	63902.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-21960930-2	chr3	21960830	21961030	+	605.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-115722.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-65097701-3	chr14	65097611	65097811	+	871.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018788, intron 1 of 6)	CpG	395.0	NM_018788	54616.0	Mm.103748	NM_018788	ENSMUSG00000021978	Extl3	2900009G18Rik|AU040105|Ext1l|mKIAA0519	exostoses (multiple)-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-112829556-4	chr12	112829443	112829643	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359292)	promoter-TSS (NM_001359292)	-22.0	NM_001359234	71963.0	Mm.313185	NM_028023	ENSMUSG00000047832	Cdca4	2410018C03Rik|HEPP|SEI-3	cell division cycle associated 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-74752122-2	chr1	74752022	74752222	+	562.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J-int|LTR|ERVL-MaLR	-3167.0	NM_153744	241113.0	Mm.166501	NM_153744	ENSMUSG00000006542	Prkag3	AMPKg3L|AMPKg3S|Amkg3|Ampkg3	protein kinase, AMP-activated, gamma 3 non-catalytic subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-21015107-4	chr11	21015074	21015274	+	991.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-76150.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30417869-6	chr7	30417807	30418007	+	909.138916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011662)	TTS (NM_011662)	1947.0	NM_011827	23900.0	Mm.379050	NM_011827	ENSMUSG00000064109	Hcst	DAP10|KAP10	hematopoietic cell signal transducer	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-40604288-2	chr12	40604188	40604388	+	590.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	158235.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-12009372-4	chr4	12009269	12009469	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42795.0	NR_040577	100503636.0	Mm.209078	NR_040577		1700123M08Rik	1600025K15Rik	RIKEN cDNA 1700123M08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-56752007-2	chr18	56751907	56752107	+	779.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010721, intron 10 of 10)	intron (NM_010721, intron 10 of 10)	44194.0	NM_010721	16906.0	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-33925600-2	chr17	33925500	33925700	+	814.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_009318, exon 4 of 8)	exon (NM_009318, exon 4 of 8)	-4294.0	NM_009059	19732.0	Mm.43777	NM_009059	ENSMUSG00000041354	Rgl2	KE1.5|Rab2l|Rgt2|Rlf	ral guanine nucleotide dissociation stimulator-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-32502621-3	chr9	32502510	32502710	+	744.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008026, intron 1 of 8)	intron (NM_008026, intron 1 of 8)	38842.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-59071607-4	chr19	59071496	59071696	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114312, intron 1 of 16)	intron (NM_001114312, intron 1 of 16)	4473.0	NM_175172	71653.0	Mm.37338	NM_175172	ENSMUSG00000041362	Shtn1	4930506M07Rik|Shootin1|mKIAA1598	shootin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-122534804-5	chr10	122534681	122534881	+	935.711121	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35110.0	NR_040616	319272.0	Mm.411763	NR_040616	ENSMUSG00000112095	A130077B15Rik	-	RIKEN cDNA A130077B15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-107402384-4	chr11	107402292	107402492	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 1 of 9)	intron (NR_153311, intron 1 of 9)	68328.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-110379812-4	chr11	110379700	110379900	+	913.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19302.0	NM_001356345	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-139400488-4	chr7	139400389	139400589	+	941.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355162)	promoter-TSS (NM_001355162)	-5.0	NM_001355162	212111.0	Mm.28308	NM_183144	ENSMUSG00000025477	Inpp5a	-	inositol polyphosphate-5-phosphatase A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95993112-2	chr3	95993018	95993218	+	878.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023320, intron 2 of 5)	intron (NM_023320, intron 2 of 5)	2721.0	NM_023320	67220.0	Mm.458147	NM_023320	ENSMUSG00000015745	Plekho1	2810052M02Rik|CKIP-1|Ckip1|JZA-20|Jza2	pleckstrin homology domain containing, family O member 1	protein-coding	0.2445955974203	0.112478024166945	0.105854407498894	0.852393129118707	0.0934345066295301	0.113966801214882	0.298336252310493	0.861262335302555	0.0805413027974499	0.968304361499284	1
Merged-chr15-11397636-2	chr15	11397536	11397736	+	598.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_033074, intron 1 of 18)	intron (NM_033074, intron 1 of 18)	2022.0	NM_033074	110960.0	Mm.286061	NM_033074	ENSMUSG00000022241	Tars	D15Wsu59e|ThrRS	threonyl-tRNA synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-54952736-4	chr6	54952632	54952832	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172729, intron 1 of 11)	intron (NM_172729, intron 1 of 11)	18929.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-63130012-6	chr14	63129890	63130090	+	803.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007798, intron 1 of 9)	intron (NM_007798, intron 1 of 9)	7528.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-17803611-4	chr13	17803501	17803701	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081058, exon 1 of 14)	exon (NM_001081058, exon 1 of 14)	1496.0	NM_001081058	69562.0	Mm.193924	NM_027118	ENSMUSG00000041297	Cdk13	2310015O17Rik|Cdc2l5	cyclin-dependent kinase 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-100082174-2	chr15	100082074	100082274	+	597.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_037311, intron 3 of 3)	intron (NR_037311, intron 3 of 3)	43510.0	NM_001159361	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-121891646-3	chr3	121891500	121891700	+	806.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61629.0	NM_172525	214137.0	Mm.229287	NM_172525	ENSMUSG00000039831	Arhgap29	6720461J18Rik|A830014I19|AU040217|B130017I01Rik|C76601|Parg1	Rho GTPase activating protein 29	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-95833510-6	chr16	95833411	95833611	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040485, intron 3 of 3)	intron (NR_040485, intron 3 of 3)	65202.0	NR_040485	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-70135905-3	chr10	70135802	70136002	+	760.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111121, intron 1 of 8)	B3A|SINE|B2	38781.0	NM_001111121	76551.0	Mm.281741	NM_001111121	ENSMUSG00000048701	Ccdc6	2810012H18Rik|AA536681|AA960498|AW061011	coiled-coil domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-157048321-4	chr1	157048196	157048396	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60354.0	NM_001305059	73435.0	Mm.116705	NM_028540	ENSMUSG00000026592	Tex35	1700057K13Rik	testis expressed 35	protein-coding	4.02251916418448	4.51297555175355	3.51385230949823	3.93718161950882	3.08623824020897	3.89704916947117	1.66561537887086	2.12633532749634	-1.59087982418619	0.0174004777256807	0.161754337618325
Merged-chr2-25254786-2	chr2	25254686	25254886	+	868.3333130000001	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177344)	promoter-TSS (NM_177344)	628.0	NM_001252541	78797.0	Mm.40020	NM_178239	ENSMUSG00000006471	Ndor1	4930447P04Rik|NR1|Ndor|Tg(UBC-cre/ERT2)1Ejb|Ubc-cre	NADPH dependent diflavin oxidoreductase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135318190-4	chr4	135318091	135318291	+	926.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35023.0	NM_016799	51796.0	Mm.1963	NM_016799	ENSMUSG00000028809	Srrm1	AA407769|POP101|Srm160	serine/arginine repetitive matrix 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-20770676-4	chr10	20770574	20770774	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVL-E-int|LTR|ERVL	-45596.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	4.13263363237251	4.95633915356068	4.92712168105329	3.98002825799241	5.16432597077736	4.85436737782936	4.99937865553066	5.0374463228114	0.56511037336768	0.122284825992265	0.548134498974544
Merged-chr10-44607472-4	chr10	44607372	44607572	+	974.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-148724.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-102294755-2	chr11	102294655	102294855	+	787.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001098836, intron 2 of 12)	intron (NM_001098836, intron 2 of 12)	1874.0	NM_001098836	217218.0	Mm.390381	NM_001098836	ENSMUSG00000059995	Atxn7l3	E030022H21Rik	ataxin 7-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-18798812-2	chr5	18798712	18798912	+	729.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	427743.0	NR_102341	70832.0	Mm.398993	NR_102341	ENSMUSG00000097626	4921504A21Rik	-	RIKEN cDNA 4921504A21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127479989-4	chr10	127479864	127480064	+	898.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359246, intron 13 of 23)	intron (NM_001359246, intron 13 of 23)	-21722.0	NM_001359751	237611.0	Mm.32087	NM_177707	ENSMUSG00000040287	Stac3	9830125E18	SH3 and cysteine rich domain 3	protein-coding	1.45293183566324	1.25112008499234	0.838530714327363	1.63703413696486	1.55674146995041	1.55002860348963	0.841504643375785	1.02205517679068	-0.172793585422224	0.898190727308322	0.998431161219273
Merged-chr10-122535334-4	chr10	122535233	122535433	+	979.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34558.0	NR_040616	319272.0	Mm.411763	NR_040616	ENSMUSG00000112095	A130077B15Rik	-	RIKEN cDNA A130077B15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97006862-2	chr6	97006762	97006962	+	819.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_177233, intron 3 of 5)	intron (NM_177233, intron 3 of 5)	53549.0	NM_177233	320701.0	Mm.131700	NM_177233	ENSMUSG00000046500	Fam19a4	C130034I18Rik|Fam19a4 Tafa-4|Tafa-4	family with sequence similarity 19, member A4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139459943-2	chr5	139459843	139460043	+	750.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_028469, intron 1 of 4)	intron (NM_028469, intron 1 of 4)	591.0	NM_028469	73212.0	Mm.84294	NM_028469	ENSMUSG00000053553	3110082I17Rik	AW411904	RIKEN cDNA 3110082I17 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-165769868-2	chr1	165769768	165769968	+	748.099976	f1_balb.idr|f1_c57bl6.idr	exon (NM_011804, exon 2 of 4)	exon (NM_011804, exon 2 of 4)	6110.0	NM_011804	433375.0	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-106138270-4	chr8	106138168	106138368	+	885.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040344, exon 5 of 5)	non-coding (NR_040344, exon 5 of 5)	-1294.0	NM_176838	77411.0	Mm.183003	NM_176838	ENSMUSG00000084128	Esrp2	9530027K23Rik|Rbm35b	epithelial splicing regulatory protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-77408821-2	chr11	77408721	77408921	+	562.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291190, intron 4 of 13)	ORR1C1|LTR|ERVL-MaLR	-55092.0	NM_139129	216961.0	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64370471-4	chr5	64370388	64370588	+	999.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	97454.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	2.97475399932758	2.75474633064137	2.97327486199772	3.38696678818834	2.76709287782988	2.33011235639285	1.84588714567749	2.81261700952874	-1.03537503208784	0.152309669488855	0.605910723135302
Merged-chr4-63159154-3	chr4	63159068	63159268	+	858.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4996.0	NM_007443	11699.0	Mm.2197	NM_007443	ENSMUSG00000028356	Ambp	AI194774|ASPI|HI-30|Intin4|Itil|UTI	alpha 1 microglobulin/bikunin	protein-coding	1.90245344041616	2.1671292508456	0.97407443904975	0.955525172685993	1.47073233178448	2.28409369689181	1.99850223620108	0.95880658812213	0.424279141590703	0.740693050337156	0.998431161219273
Merged-chr5-134177641-2	chr5	134177541	134177741	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033572)	promoter-TSS (NM_033572)	-874.0	NM_033572	94254.0	Mm.29508	NM_033572	ENSMUSG00000061979	Rcc1l	5730496C04Rik|AU019812|Wbscr16	reculator of chromosome condensation 1 like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-5049974-4	chr16	5049869	5050069	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356320)	promoter-TSS (NM_001356320)	-59.0	NM_028720	74022.0	Mm.21652	NM_028720	ENSMUSG00000022536	Glyr1	2810419J22Rik|3930401K13Rik|AW545332|Npac	glyoxylate reductase 1 homolog (Arabidopsis)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-24103341-4	chr13	24103239	24103439	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026825, intron 17 of 37)	intron (NM_026825, intron 17 of 37)	-112125.0	NM_145399	214189.0	Mm.255667	NM_145399	ENSMUSG00000021337	Scgn	-	secretagogin, EF-hand calcium binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-80229136-4	chr12	80229003	80229203	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134156, intron 1 of 20)	intron (NM_134156, intron 1 of 20)	31268.0	NM_134156	109711.0	Mm.253564	NM_134156	ENSMUSG00000015143	Actn1	3110023F10Rik|Actn1a	actinin, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-125462410-3	chr8	125462304	125462504	+	898.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357372, intron 10 of 21)	intron (NM_001357372, intron 10 of 21)	30429.0	NM_001081337	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	3.80072467250113	2.48555612764963	3.94684611525455	3.18414406887983	3.12733741930697	2.2997822803156	3.30220142715728	3.36562035382445	-0.624619990317423	0.333635101505565	0.833601405219443
Merged-chr13-5988645-4	chr13	5988541	5988741	+	933.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	127152.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-106858225-4	chr9	106858120	106858320	+	949.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001015507, exon 14 of 23)	exon (NM_001015507, exon 14 of 23)	28780.0	NM_175402	109095.0	Mm.431589	NM_175402	ENSMUSG00000074102	Rbm15b	1810017N16Rik	RNA binding motif protein 15B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-20702732-2	chr16	20702632	20702832	+	662.25	f1_balb.idr|f1_c57bl6.idr	TTS (NM_009900)	TTS (NM_009900)	7675.0	NM_133778	78408.0	Mm.196512	NM_133778	ENSMUSG00000050821	Fam131a	2900046G09Rik	family with sequence similarity 131, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-75182147-2	chr10	75182047	75182247	+	563.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081412, intron 22 of 22)	intron (NM_001081412, intron 22 of 22)	-29926.0	NM_153406	74392.0	Mm.27716	NM_153406	ENSMUSG00000033444	Specc1l	4930470P14Rik|4932439K10Rik|9530057A13Rik|AI317249|Cytsa|mKIAA0376	sperm antigen with calponin homology and coiled-coil domains 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-64530874-6	chr1	64530746	64530946	+	899.111084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-1958.0	NM_009952	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99981481-2	chr7	99981381	99981581	+	936.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1023.0	NM_175388	108937.0	Mm.323087	NM_175388	ENSMUSG00000058761	Rnf169	2900057K09Rik	ring finger protein 169	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-62854418-2	chr13	62854318	62854518	+	785.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007994, intron 2 of 6)	intron (NM_007994, intron 2 of 6)	3952.0	NM_007994	14120.0	Mm.391871	NM_007994	ENSMUSG00000021456	Fbp2	Fbp-1|Fbp1|Rae-30	fructose bisphosphatase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-5380354-7	chr5	5380338	5380538	+	995.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011074)	promoter-TSS (NM_011074)	-187.0	NM_011074	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127013680-2	chr7	127013580	127013780	+	846.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_080638, intron 1 of 14)	B1F|SINE|Alu	914.0	NM_080638	78388.0	Mm.228797	NM_080638	ENSMUSG00000030681	Mvp	2310009M24Rik|LRP|VAULT1	major vault protein	protein-coding	0.939982148365889	1.08941954378852	0.544850258823903	0.719364645853967	1.39474521554882	1.23081468733334	0.547050318447479	0.538469724463069	0.739022742777341	0.648161737254123	0.984971605872381
Merged-chr13-91702519-4	chr13	91702421	91702621	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_015501, exon 2 of 2)	non-coding (NR_015501, exon 2 of 2)	-39000.0	NM_028790	74156.0	Mm.275963	NM_028790	ENSMUSG00000021620	Acot12	1300004O04Rik|4930449F15Rik|AV027244|Cach|mCACH-1	acyl-CoA thioesterase 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65681108-4	chr9	65680993	65681193	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301307, intron 1 of 4)	intron (NM_001301307, intron 1 of 4)	4545.0	NM_001301307	18247.0	Mm.116749	NM_010952	ENSMUSG00000040652	Oaz2	AZ-2|AZ2|Oaz2-ps|Sez15	ornithine decarboxylase antizyme 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-84119802-2	chr17	84119702	84119902	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41142.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-112693635-4	chr12	112693519	112693719	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	14779.0	NM_001100460	382639.0	Mm.11350	NM_001100460	ENSMUSG00000037638	Zbtb42	EG382639|Gm5188|simiRP58	zinc finger and BTB domain containing 42	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123848274-4	chr5	123848072	123848272	+	876.033325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17344.0	NM_030701	80885.0	Mm.440567	NM_030701	ENSMUSG00000045502	Hcar2	Gpr109a|Gpr109b|HM74|Niacr1|PUMA-G|Pumag|mHM74b	hydroxycarboxylic acid receptor 2	protein-coding	1.87313220593749	1.13987365906221	0.805568632421771	2.98968307002208	0.745769675361561	1.1500063194919	0.812236778286368	2.29506854412857	-1.34149500408603	0.314096387445879	0.815934278992998
Merged-chr11-118457159-4	chr11	118457070	118457270	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB8|LINE|L1	-2175.0	NR_045902	100126224.0	Mm.441989	NR_045902	ENSMUSG00000086514	Gm11747	-	predicted gene 11747	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-148548175-4	chr5	148548047	148548247	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359199, intron 3 of 6)	intron (NM_001359199, intron 3 of 6)	3526.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	3.09933344153632	2.46306952756782	3.05346170271762	1.49426375179416	2.66539534463251	3.34541646188229	2.54169331084012	2.98334676418295	0.44299008208059	0.573784504010181	0.964527909969019
Merged-chr10-119066153-3	chr10	119066057	119066257	+	833.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15658.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-101069027-4	chr4	101068950	101069150	+	979.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183024)	promoter-TSS (NM_183024)	12.0	NM_183024	242570.0	Mm.185636	NM_183024	ENSMUSG00000035275	Raver2	A430091O22Rik	ribonucleoprotein, PTB-binding 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-36151352-2	chr3	36151252	36151452	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001101478, intron 1 of 3)	CpG	272.0	NM_001101478	241944.0	Mm.260056	NM_001101478	ENSMUSG00000033883	D3Ertd254e	-	DNA segment, Chr 3, ERATO Doi 254, expressed	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-55206127-3	chr11	55206070	55206270	+	786.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153139, intron 1 of 10)	L3|LINE|CR1	1830.0	NM_153139	215335.0	Mm.35732	NM_153139	ENSMUSG00000020261	Slc36a1	5830411H19Rik|AI839897|Pat1	solute carrier family 36 (proton/amino acid symporter), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-87109002-4	chr11	87108856	87109056	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175563)	promoter-TSS (NM_175563)	-242.0	NM_175563	270906.0	Mm.132381	NM_175563	ENSMUSG00000020493	Prr11	B930067F20Rik	proline rich 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140620225-2	chr5	140620125	140620325	+	814.25	f1_balb.idr|f1_c57bl6.idr	TTS (NM_175274)	TTS (NM_175274)	12884.0	NM_008494	16848.0	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-51915449-2	chr3	51915349	51915549	+	622.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	189557.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132963681-4	chr4	132963596	132963796	+	961.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10399.0	NM_010208	14191.0	Mm.271665	NM_010208	ENSMUSG00000028874	Fgr	-	FGR proto-oncogene, Src family tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-105701099-2	chr5	105700999	105701199	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178701, intron 1 of 2)	intron (NM_178701, intron 1 of 2)	289.0	NM_178701	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27714875-2	chr2	27714775	27714975	+	630.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290482, intron 1 of 9)	intron (NM_001290482, intron 1 of 9)	4292.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-73717482-2	chr12	73717382	73717582	+	726.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008856, intron 9 of 13)	intron (NM_008856, intron 9 of 13)	132686.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-139289990-2	chr4	139289890	139290090	+	902.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037761, intron 9 of 9)	intron (NM_001037761, intron 9 of 9)	20718.0	NR_151463	212555.0	Mm.45131	NM_145384	ENSMUSG00000028744	Pqlc2	BC019216	PQ loop repeat containing 2	protein-coding	0.562260949920858	0.598163903306715	0.586568059878147	1.19461215544419	0.564547843702006	1.17347622761478	1.36718632571531	1.57773131462572	2.12403973587643	0.20165635257079	0.687089999473022
Merged-chr4-145201154-1	chr4	145201054	145201254	+	561.0	f0_balb.idr	Intergenic	ID_B1|SINE|B4	-6149.0	NM_001276465	230895.0	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-42225302-4	chr10	42225192	42225392	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019740, intron 2 of 3)	intron (NM_019740, intron 2 of 3)	51450.0	NM_019740	56484.0	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-125560949-4	chr1	125560845	125561045	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028787)	promoter-TSS (NM_028787)	-57.0	NM_028787	74150.0	Mm.28654	NM_028787	ENSMUSG00000026342	Slc35f5	1300003P13Rik|AI646727	solute carrier family 35, member F5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-142270453-2	chr1	142270353	142270553	+	999.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1370244.0	NM_020025	26878.0	Mm.285580	NM_020025	ENSMUSG00000033849	B3galt2	-	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-30876227-4	chr14	30876137	30876337	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028839, exon 8 of 8)	3' UTR (NM_028839, exon 8 of 8)	-3020.0	NM_181390	66175.0	Mm.220895	NM_181390	ENSMUSG00000042485	Mustn1	1110028G01Rik|Mustang	musculoskeletal, embryonic nuclear protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-151837769-2	chr2	151837669	151837869	+	619.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5158.0	NM_001040689	228770.0	Mm.159868	NM_001040689	ENSMUSG00000032852	Rspo4	A730099F22|A930029K19Rik	R-spondin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88746986-2	chr3	88746896	88747096	+	908.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_018804, exon 4 of 4)	3' UTR (NM_018804, exon 4 of 4)	25603.0	NM_018804	229521.0	Mm.379376	NM_018804	ENSMUSG00000068923	Syt11	1500004A13Rik|3632445O20Rik|5430404N14Rik|6530420C11Rik|AI851970	synaptotagmin XI	protein-coding	0.125919439375796	-0.354297115594255	-0.359015577650724	0.467407181556386	-0.36783462823638	-0.353235219511551	-0.357973808699975	-0.362026627521059	-3.72857999873482	0.146194205611389	1
Merged-chr2-132008273-4	chr2	132008165	132008365	+	918.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175445, intron 3 of 10)	intron (NM_175445, intron 3 of 10)	21723.0	NM_175445	215653.0	Mm.204737	NM_175445	ENSMUSG00000027339	Rassf2	3830431H01Rik|9030412M04Rik|AI852669|AW495050	Ras association (RalGDS/AF-6) domain family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-10785150-4	chr16	10785074	10785274	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271603, intron 1 of 1)	CpG	362.0	NM_009896	12703.0	Mm.130	NM_009896	ENSMUSG00000038037	Socs1	Cish1|Cish7|JAB|SOCS-1|SSI-1	suppressor of cytokine signaling 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85535700-2	chr12	85535600	85535800	+	637.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61810.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-136346803-2	chr1	136346703	136346903	+	839.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347110)	promoter-TSS (NM_001347110)	-699.0	NM_001347110	67886.0	Mm.144143	NM_001081360	ENSMUSG00000041570	Camsap2	1600013L13Rik|4930541M15Rik|Camsap1l1|mKIAA1078	calmodulin regulated spectrin-associated protein family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-57979341-2	chr15	57979241	57979441	+	624.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6562.0	NM_173862	239463.0	Mm.221241	NM_173862	ENSMUSG00000051225	Fam83a	-	family with sequence similarity 83, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-55209024-2	chr13	55208924	55209124	+	916.833374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008739)	promoter-TSS (NM_008739)	-758.0	NM_008739	18193.0	Mm.168965	NM_008739	ENSMUSG00000021488	Nsd1	AI528500|KMT3B	nuclear receptor-binding SET-domain protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80427180-2	chr10	80427080	80427280	+	670.275024	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164153, intron 3 of 18)	intron (NM_001164153, intron 3 of 18)	6473.0	NM_001164150	21423.0	Mm.3406	NM_011548	ENSMUSG00000020167	Tcf3	A1|AA408400|ALF2|AW209082|E12|E12/E47|E2A|E47|KA1|ME2|Pan1|Pan2|TCF-3|Tcfe2a|VDIR|bHLHb21	transcription factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-35298692-2	chr15	35298592	35298792	+	614.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_054049, intron 1 of 3)	intron (NM_054049, intron 1 of 3)	2580.0	NM_054049	107587.0	Mm.46336	NM_054049	ENSMUSG00000022330	Osr2	5430409I15Rik|Osr2A|Osr2B	odd-skipped related 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-110564104-1	chr13	110564004	110564204	+	548.0	f1_balb.idr	Intergenic	Intergenic	169060.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-82763492-2	chr18	82763392	82763592	+	865.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20C1_MM|LTR|ERVK	-4453.0	NR_045389	76961.0	Mm.396392	NR_045389	ENSMUSG00000101773	2210420H20Rik	-	RIKEN cDNA 2210420H20 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-114876207-2	chr6	114876107	114876307	+	613.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356371, intron 3 of 5)	intron (NM_001356371, intron 3 of 5)	45614.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-53816618-4	chr1	53816527	53816727	+	966.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001883, intron 28 of 28)	MTE2b|LTR|ERVL-MaLR	-31412.0	NM_133810	98267.0	Mm.25559	NM_133810	ENSMUSG00000026094	Stk17b	3110009A03Rik|AI120141|Drak2	serine/threonine kinase 17b (apoptosis-inducing)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10858056-2	chr19	10857956	10858156	+	780.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_023044)	TTS (NM_023044)	11723.0	NM_133804	98170.0	Mm.490254	NM_133804	ENSMUSG00000024736	Tmem132a	6720481D13Rik|Hspa5bp1|Orai1|R74613	transmembrane protein 132A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-44254213-2	chr19	44254113	44254313	+	566.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39463.0	NM_009128	20250.0	Mm.487021	NM_009128	ENSMUSG00000025203	Scd2	Mir5114|Scd-2|mir-5114|swty	stearoyl-Coenzyme A desaturase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81729551-2	chr15	81729451	81729651	+	996.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011241, intron 1 of 16)	CpG	368.0	NM_011241	19387.0	Mm.270975	NM_011241	ENSMUSG00000022391	Rangap1	C79654|Fug1|mKIAA1835	RAN GTPase activating protein 1	protein-coding	-0.318189241960513	-0.449135904892037	-0.45309378493302	-0.152310177136739	-0.46045141926212	-0.448243165912676	-0.452221204819864	0.267407310331329	1.09194081767828	0.670070034600865	1
Merged-chr11-97665086-2	chr11	97664980	97665180	+	753.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_139311, intron 2 of 19)	intron (NM_139311, intron 2 of 19)	1668.0	NM_139311	246198.0	Mm.23685	NM_139311	ENSMUSG00000038437	Mllt6	AI315037|Af17	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124307056-2	chr6	124306956	124307156	+	922.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_053094, exon 3 of 17)	exon (NM_053094, exon 3 of 17)	2405.0	NM_053094	93671.0	Mm.37426	NM_053094	ENSMUSG00000008845	Cd163	CD163v2|CD163v3	CD163 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115188825-4	chr11	115188725	115188925	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033393, intron 2 of 9)	intron (NM_001033393, intron 2 of 9)	1338.0	NM_001033393	320534.0	Mm.260587	NM_001033393	ENSMUSG00000045980	Tmem104	C630005D06Rik|mFLJ00021	transmembrane protein 104	protein-coding	3.30256359915402	4.39273833179113	3.31481380794112	2.74280833608311	4.02861633840896	2.96258673508573	4.28904012731949	3.50244128702361	0.312912415997237	0.597232464695267	0.971902489067841
Merged-chr12-80242828-3	chr12	80242721	80242921	+	754.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134156, intron 1 of 20)	ID_B1|SINE|B4	17550.0	NM_134156	109711.0	Mm.253564	NM_134156	ENSMUSG00000015143	Actn1	3110023F10Rik|Actn1a	actinin, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-173962858-2	chr1	173962783	173962983	+	721.333374	f0_balb.idr|f1_balb.idr	intron (NM_008327, intron 6 of 6)	intron (NM_008327, intron 6 of 6)	19961.0	NM_008327	26388.0	Mm.218770	NM_008327	ENSMUSG00000026535	Ifi202b	Ifbip-1|Ifi202|Ifi202a|p202	interferon activated gene 202B	protein-coding	0.785061687744491	0.838723973912754	1.65847291609083	0.80806100734437	2.06486737622966	1.46580883769837	1.88275981599894	1.02689256295407	2.0998467912131	0.132441993764597	0.56954804343643
Merged-chr2-36011441-2	chr2	36011341	36011541	+	610.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-31817.0	NM_029774	74410.0	Mm.21591	NM_028921	ENSMUSG00000026885	Ttll11	4932702F08Rik|4933424A20Rik|AU043211|D2Ertd624e	tubulin tyrosine ligase-like family, member 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100121556-4	chr7	100121442	100121642	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133692)	promoter-TSS (NM_133692)	-42.0	NM_133692	67967.0	Mm.37562	NM_133692	ENSMUSG00000030726	Pold3	2410142G14Rik|C85233|P66|P68	polymerase (DNA-directed), delta 3, accessory subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125039045-2	chr6	125038942	125039142	+	741.849976	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133345)	promoter-TSS (NM_133345)	-806.0	NM_133345	28019.0	Mm.262547	NM_133345	ENSMUSG00000030330	Ing4	D6Wsu147e|D6Xrf92|p29ING4	inhibitor of growth family, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-53594161-4	chr5	53594055	53594255	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359152, intron 1 of 9)	intron (NM_001359152, intron 1 of 9)	3669.0	NM_001080927	19664.0	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-174339145-2	chr2	174339045	174339245	+	793.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_201616, intron 3 of 11)	intron (NM_201616, intron 3 of 11)	9056.0	NM_001077510	14683.0	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-73604754-1	chr15	73604654	73604854	+	653.5	f0_balb.idr	intron (NM_001357747, intron 2 of 7)	intron (NM_001357747, intron 2 of 7)	-8228.0	NM_001168255	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-17592577-2	chr17	17592477	17592677	+	602.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172827, intron 1 of 17)	intron (NM_172827, intron 1 of 17)	31912.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-90295793-3	chr3	90295692	90295892	+	819.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25643.0	NR_105979	102465612.0		NR_105979	ENSMUSG00000099199	Mir7012	Gm27370|mmu-mir-7012	microRNA 7012	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-120486112-1	chr6	120486012	120486212	+	700.0	f1_balb.idr	Intergenic	MIR|SINE|MIR	7695.0	NM_033567	94047.0	Mm.23088	NM_033567	ENSMUSG00000094626	Tmem121b	AW048664|Cecr6	transmembrane protein 121B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-116050547-2	chr12	116050447	116050647	+	644.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_019565, intron 1 of 2)	RMER15|LTR|ERVL	2823.0	NM_019565	56220.0	Mm.254997	NM_019565	ENSMUSG00000042063	Zfp386	Kzf1|mKIAA4205	zinc finger protein 386 (Kruppel-like)	protein-coding	-1.01964838370995	-1.0015551455579	-1.01306505602199	-1.01633146861274	-1.01915587274544	-0.999060899945599	-0.684544449754875	-0.590454665804749	2.80730032370252	0.371567654989324	1
Merged-chr2-59438597-4	chr2	59438501	59438701	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46052.0	NM_029723	76747.0	Mm.275769	NM_029723	ENSMUSG00000026989	Dapl1	2310032F03Rik|EEDA	death associated protein-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-66138242-3	chr5	66138146	66138346	+	690.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127382, intron 2 of 7)	intron (NM_001127382, intron 2 of 7)	12732.0	NM_001291226	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-112195946-2	chr5	112195846	112196046	+	765.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-10817.0	NR_045377	75569.0	Mm.243721	NR_045377	ENSMUSG00000101683	1700028D13Rik	-	RIKEN cDNA 1700028D13 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-91095113-3	chr1	91095014	91095214	+	727.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008515, intron 10 of 22)	intron (NM_008515, intron 10 of 22)	41670.0	NM_001310732	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-14960081-3	chr10	14959985	14960185	+	676.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	199796.0	NM_008703	18101.0	Mm.487342	NM_008703	ENSMUSG00000019865	Nmbr	BB182387	neuromedin B receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-79058711-4	chr8	79058611	79058811	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001294279, intron 1 of 14)	intron (NM_001294279, intron 1 of 14)	30274.0	NM_178267	622675.0	Mm.48724	NM_178267	ENSMUSG00000071064	Zfp827	2810449M09Rik|D630040G17Rik|Znf827	zinc finger protein 827	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-55964571-3	chr16	55964419	55964619	+	820.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-1756.0	NM_024218	68193.0	Mm.29221	NM_024218	ENSMUSG00000098274	Rpl24	0610008L05Rik|Bst	ribosomal protein L24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-44070828-4	chr10	44070722	44070922	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65976.0	NM_172393	11630.0	Mm.292082	NM_172393	ENSMUSG00000019866	Crybg1	AI462491|AI463325|Aim1	crystallin beta-gamma domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84844097-2	chr8	84843997	84844197	+	898.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_007591, exon 7 of 9)	exon (NM_007591, exon 7 of 9)	2834.0	NM_007591	12317.0	Mm.1971	NM_007591	ENSMUSG00000003814	Calr	CRT|Calregulin	calreticulin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32606980-4	chr2	32606866	32607066	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_110347)	promoter-TSS (NR_110347)	-19.0	NM_001289547	50935.0	Mm.88831	NM_016973	ENSMUSG00000026811	St6galnac6	ST6GalNAcVI|Siat7f	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-165606251-3	chr1	165606138	165606338	+	891.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083897, intron 2 of 5)	intron (NM_001083897, intron 2 of 5)	28303.0	NM_001001880	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-121464244-1	chr1	121464144	121464344	+	543.0	f1_c57bl6.idr	intron (NM_029955, intron 11 of 23)	MTE2a|LTR|ERVL-MaLR	33177.0	NM_029955	70829.0	Mm.25788	NM_027567	ENSMUSG00000026339	Ccdc93	4633402D15Rik|9230102M16Rik	coiled-coil domain containing 93	protein-coding	-0.938290465227035	-0.441504994078113	-0.932656635401405	-0.772252202801329	-0.937768990199934	-0.920934199722792	-0.932049059015755	-0.769630825588121	-1.86227839688779	0.519061847484075	1
Merged-chr3-100430518-4	chr3	100430394	100430594	+	899.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040543, intron 2 of 2)	intron (NR_040543, intron 2 of 2)	4089.0	NR_040543	73806.0	Mm.396549	NR_040543	ENSMUSG00000086923	4930406D18Rik	-	RIKEN cDNA 4930406D18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-34042370-1	chr15	34042270	34042470	+	541.0	f1_balb.idr	Intergenic	Intergenic	-40349.0	NM_001357926	67154.0	Mm.130883	NM_026002	ENSMUSG00000022255	Mtdh	2610103J23Rik|3D3|3D3/Lyric|AEG-1|AV353288|D8Bwg1112e|Lyric	metadherin	protein-coding	1.01070251311438	1.13907523149298	1.24256619249475	0.715625580453636	1.14519964856576	1.76201661709835	1.25373344640206	0.717339584736523	0.998672831723027	0.475172073925171	0.927029054433838
Merged-chr11-77513329-4	chr11	77513212	77513412	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024920)	promoter-TSS (NM_001024920)	-39.0	NM_001024920	216964.0	Mm.341211	NM_001024920	ENSMUSG00000044328	Trp53i13	2410019G02Rik|Tp53i13	transformation related protein 53 inducible protein 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80561539-7	chr10	80561462	80561662	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025852)	promoter-TSS (NM_025852)	-2.0	NM_025852	66932.0	Mm.1116	NM_025852	ENSMUSG00000047417	Rexo1	1700021P10Rik|2610511M11Rik|AW050347|EloA-BP1|Rex1|Tceb3bp1	REX1, RNA exonuclease 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-40581329-1	chr19	40581229	40581429	+	598.0	f1_balb.idr	intron (NM_153554, intron 3 of 18)	ID_B1|SINE|B4	7134.0	NM_019698	56454.0	Mm.233117	NM_019698	ENSMUSG00000025007	Aldh18a1	2810433K04Rik|AI429789|Pycs	aldehyde dehydrogenase 18 family, member A1	protein-coding	0.536491204313105	0.569598973097707	1.40369187531136	0.895495059727433	0.538598879307499	0.974752606562546	1.41863544951722	0.900963032840085	0.400695703845824	0.802674628096961	0.998431161219273
Merged-chr14-79426488-4	chr14	79426390	79426590	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024135)	promoter-TSS (NM_001024135)	-21.0	NM_001024135	211255.0	Mm.284526	NM_001024135	ENSMUSG00000043881	Kbtbd7	1110008P08Rik|AU045792|Gm295	kelch repeat and BTB (POZ) domain containing 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-95843001-3	chr13	95842858	95843058	+	761.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027711, intron 1 of 35)	intron (NM_027711, intron 1 of 35)	48964.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	1.85059883130534	1.62826702839045	1.57487108156017	1.86510173125926	1.19002455479714	1.06476994233796	1.58678613058553	1.77530614979287	-1.01025836792452	0.376839670303273	0.8699311886157
Merged-chr16-20426420-4	chr16	20426321	20426521	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013790)	promoter-TSS (NM_013790)	-27.0	NM_176839	27416.0	Mm.20845	NM_013790	ENSMUSG00000022822	Abcc5	2900011L11Rik|AI132311|Abcc5a|Abcc5b|Mrp5	ATP-binding cassette, sub-family C (CFTR/MRP), member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128338709-4	chr2	128338620	128338820	+	999.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028590, intron 1 of 2)	intron (NR_028590, intron 1 of 2)	90631.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4396544-4	chr19	4396461	4396661	+	999.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001001984, exon 1 of 21)	5' UTR (NM_001001984, exon 1 of 21)	516.0	NM_001001984	225876.0	Mm.31941	NM_001001984	ENSMUSG00000054611	Kdm2a	100043628|5530401A10Rik|AA589516|AW536790|Cxxc8|Fbl11|Fbl7|Fbxl11|Gm4560|Jhdm1|Jhdm1a|lalina	lysine (K)-specific demethylase 2A	protein-coding	0.561737865979484	0.598039389826701	0.118035115587847	0.113878477200288	0.369468104751368	0.607363639629996	0.119224853296036	0.114604055930137	-0.36207129950832	0.85937608932629	1
Merged-chr10-26777635-3	chr10	26777559	26777759	+	729.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176837, intron 1 of 14)	intron (NM_176837, intron 1 of 14)	5147.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-33818897-2	chr17	33818846	33819046	+	958.666626	f1_balb.idr|f1_c57bl6.idr	exon (NM_030697, exon 5 of 11)	exon (NM_030697, exon 5 of 11)	5616.0	NM_016844	54127.0	Mm.352374	NM_016844	ENSMUSG00000067288	Rps28	-	ribosomal protein S28	protein-coding	-0.849540347160918	-0.83791883826935	-0.842874229298225	-0.845379854937529	-0.567718301155892	-0.197178340663439	-0.842158039317344	-0.844942093372508	3.16182143622335	0.281564155371618	1
Merged-chr11-22657167-2	chr11	22657067	22657267	+	647.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	144884.0	NM_153596	103765.0	Mm.221274	NM_153596	ENSMUSG00000049904	Tmem17	AI503894|AW049890	transmembrane protein 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-32284406-1	chr17	32284306	32284506	+	1000.0	f0_c57.idr	promoter-TSS (NM_198094)	promoter-TSS (NM_198094)	-273.0	NM_020508	57261.0	Mm.253518	NM_020508	ENSMUSG00000024002	Brd4	Brd5|HUNK1|MCAP|WI-11513	bromodomain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-62582422-4	chr10	62582320	62582520	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_019553, exon 15 of 15)	exon (NM_019553, exon 15 of 15)	-3963.0	NM_028197	72320.0	Mm.258955	NM_028197	ENSMUSG00000036955	Kif1bp	0710007C18Rik|2510003E04Rik|KBP|mKIAA1279	KIF1 binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-55853561-4	chr7	55853443	55853643	+	992.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011370, intron 1 of 30)	L1ME3G|LINE|L1	11472.0	NM_001164661	20430.0	Mm.37249	NM_011370	ENSMUSG00000030447	Cyfip1	E030028J09Rik|P140SRA-1|P140sra1|Shyc|Sra-1|Sra1|l(7)1Rl|l71Rl|l7Rl1|mKIAA0068|pl-1	cytoplasmic FMR1 interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-11016360-4	chr8	11016254	11016454	+	980.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_046017, intron 1 of 4)	intron (NR_046017, intron 1 of 4)	-7924.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-100598616-1	chr15	100598516	100598716	+	621.0	f1_balb.idr	intron (NM_001304965, intron 1 of 10)	intron (NM_001304965, intron 1 of 10)	1368.0	NM_001304965	19009.0	Mm.28825	NM_010127	ENSMUSG00000009739	Pou6f1	2310038G18Rik|C79593|Emb|cns-1	POU domain, class 6, transcription factor 1	protein-coding	0.14372150561188	1.44387378965025	0.165875280077913	0.157664084253675	0.145821261767539	0.940329231827155	0.168198050449693	0.549987195337977	-0.651281299352053	0.74286476996731	1
Merged-chr9-111220746-4	chr9	111220641	111220841	+	874.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027742, intron 11 of 13)	intron (NM_027742, intron 11 of 13)	50867.0	NM_026810	17350.0	Mm.486383	NM_026810	ENSMUSG00000032498	Mlh1	1110035C23Rik|AI317206|AI325952|AI561766	mutL homolog 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-94949962-3	chr3	94949861	94950061	+	869.805542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA8|LINE|L1	-4147.0	NM_017395	53970.0	Mm.24308	NM_017395	ENSMUSG00000005774	Rfx5	-	regulatory factor X, 5 (influences HLA class II expression)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-57744718-2	chr18	57744607	57744807	+	634.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35288.0	NR_152224	100503033.0	Mm.381112	NR_152224		Gm19519	-	predicted gene, 19519	ncRNA	-0.226235296896101	0.595109062818019	-0.213198233288771	-0.218068504042706	-0.225013795898844	0.608384863201147	-0.211812549537951	-0.217215065379025	0.0395006580732415	0.987233647591244	1
Merged-chr18-54849325-2	chr18	54849225	54849425	+	733.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	140855.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-112261935-4	chr2	112261833	112262033	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025403)	promoter-TSS (NM_025403)	7.0	NM_025403	66181.0	Mm.272346	NM_025403	ENSMUSG00000027133	Nop10	1110036B12Rik|NOP10P|Nola3	NOP10 ribonucleoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-54100424-2	chr11	54100324	54100524	+	552.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011031)	promoter-TSS (NM_011031)	-500.0	NM_001136076	18452.0	Mm.3705	NM_011031	ENSMUSG00000018906	P4ha2	AA407196|C76437|P4hl	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-34080027-4	chr11	34079930	34080130	+	804.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010696, intron 13 of 20)	intron (NM_010696, intron 13 of 20)	18524.0	NR_155520	76874.0	Mm.437529	NR_155520		4930469K13Rik	-	RIKEN cDNA 4930469K13 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-60594443-4	chr13	60594336	60594536	+	960.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-7511.0	NM_001285917	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166469181-4	chr2	166469087	166469287	+	996.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER57D|LTR|ERV1	21736.0	NR_015558	319684.0	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-25508975-4	chr9	25508840	25509040	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 2 of 7)	intron (NM_026189, intron 2 of 7)	27343.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-60892982-4	chr13	60892885	60893085	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	4462.0	NM_007797	13025.0	Mm.30144	NM_007797	ENSMUSG00000074874	Ctla2b	AW545568|Ctla-2b	cytotoxic T lymphocyte-associated protein 2 beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122343936-4	chr5	122343868	122344068	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144912, intron 5 of 10)	intron (NM_144912, intron 5 of 10)	10227.0	NM_144912	231724.0	Mm.255587	NM_144912	ENSMUSG00000038569	Rad9b	A630082N15Rik|BC021784	RAD9 checkpoint clamp component B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-61586592-2	chr2	61586492	61586692	+	623.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011529, intron 1 of 7)	B3|SINE|B2	-6505.0	NR_149324	21353.0	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-35889260-3	chr18	35889141	35889341	+	719.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	34554.0	NM_001357459	67393.0	Mm.94560	NM_133687	ENSMUSG00000046668	Cxxc5	4930415K17Rik	CXXC finger 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-103174367-2	chr11	103174267	103174467	+	695.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019679, intron 1 of 26)	intron (NM_019679, intron 1 of 26)	3229.0	NM_019679	57778.0	Mm.138913	NM_019679	ENSMUSG00000055805	Fmnl1	8030453N10Rik|AI553564|Fmnl|Fnrl|Frls	formin-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-53474771-3	chr15	53474658	53474858	+	575.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177225, intron 4 of 4)	intron (NM_177225, intron 4 of 4)	-128575.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-173342669-2	chr2	173342569	173342769	+	643.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66136.0	NM_022995	65112.0	Mm.73682	NM_022995	ENSMUSG00000038400	Pmepa1	2210418I02Rik|AW455466|Erg1.2|N4wbp4|Stag1|Tmepai	prostate transmembrane protein, androgen induced 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-21984965-3	chr14	21984848	21985048	+	920.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_145459, exon 3 of 3)	exon (NM_145459, exon 3 of 3)	4653.0	NM_145459	218820.0	Mm.292401	NM_145459	ENSMUSG00000039081	Zfp503	AI181838|B830002A16Rik|Nolz-1|Nolz1|Znf503	zinc finger protein 503	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5566897-3	chr17	5566796	5566996	+	805.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	74296.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-42565397-2	chr13	42565297	42565497	+	587.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-115402.0	NM_001302635	218194.0	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-105268530-4	chr4	105268422	105268622	+	912.5166630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	111175.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-48856606-4	chr11	48856516	48856716	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14804.0	NM_001355757	15944.0	Mm.29938	NM_008326	ENSMUSG00000046879	Irgm1	Ifggd3|Ifi1|Iigp3|Iipg3|Irgm	immunity-related GTPase family M member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70579574-1	chr14	70579474	70579674	+	670.0	f1_c57bl6.idr	exon (NM_001360475, exon 3 of 3)	exon (NM_001360475, exon 3 of 3)	1475.0	NM_001360474	213484.0	Mm.34191	NM_153136	ENSMUSG00000045211	Nudt18	BC036718	nudix (nucleoside diphosphate linked moiety X)-type motif 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56625648-2	chr17	56625548	56625748	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028782, intron 1 of 17)	intron (NM_028782, intron 1 of 17)	1255.0	NM_028782	74142.0	Mm.329136	NM_028782	ENSMUSG00000041168	Lonp1	1200017E13Rik|LON|Prss15	lon peptidase 1, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-45318153-2	chr14	45318053	45318253	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_015774, intron 1 of 15)	CpG	419.0	NM_015774	50527.0	Mm.387108	NM_015774	ENSMUSG00000021831	Ero1l	ERO1-L|Ero1a	ERO1-like (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-99385420-5	chr9	99385232	99385432	+	766.099976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008624)	TTS (NM_008624)	-26802.0	NM_177775	272636.0	Mm.490440	NM_177775	ENSMUSG00000037681	Esyt3	D930024E11|D9Ertd280e|Fam62c|mKIAA4186	extended synaptotagmin-like protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88477936-4	chr3	88477838	88478038	+	951.662476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15374.0	NM_019390	16905.0	Mm.243014	NM_019390	ENSMUSG00000028063	Lmna	Dhe	lamin A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65630214-2	chr9	65630114	65630314	+	946.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028030)	promoter-TSS (NM_028030)	-368.0	NM_028030	71973.0	Mm.29148	NM_028030	ENSMUSG00000032387	Rbpms2	2400008B06Rik|AI316523	RNA binding protein with multiple splicing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-34069854-2	chr13	34069754	34069954	+	848.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026512, intron 6 of 6)	RLTR12C|LTR|ERVK	8154.0	NM_009450	22151.0	Mm.422827	NM_009450	ENSMUSG00000058672	Tubb2a	M(beta)2|Tubb2	tubulin, beta 2A class IIA	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-109869145-4	chr8	109869048	109869248	+	950.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122594, intron 1 of 18)	CpG	545.0	NM_001122594	244650.0	Mm.23494	NM_001122594	ENSMUSG00000031732	Phlpp2	AI481772|C130044A18Rik|Phlppl	PH domain and leucine rich repeat protein phosphatase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-42180198-3	chr16	42180091	42180291	+	743.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001361282, exon 11 of 11)	3' UTR (NM_001361282, exon 11 of 11)	123278.0	NR_105858	102466172.0		NR_105858	ENSMUSG00000098300	Mir6540	Gm27780|mir-6540|mmu-mir-6540	microRNA 6540	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-36218918-4	chr17	36218839	36219039	+	999.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-28788.0	NM_008208	15043.0	Mm.426002	NM_008208	ENSMUSG00000054128	H2-T3	H-2T3|H2-Tw3|MumuTL|TL	histocompatibility 2, T region locus 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-93552519-4	chr3	93552432	93552632	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2585.0	NM_009112	20194.0	Mm.1	NM_009112	ENSMUSG00000041959	S100a10	42C|AA409961|AL024248|CAL12|CLP11|Cal1l|p10|p11	S100 calcium binding protein A10 (calpactin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-23748698-2	chr18	23748598	23748798	+	794.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3607.0	NR_126066	100502834.0	Mm.213614	NR_126066	ENSMUSG00000086287	Gm15972	-	predicted gene 15972	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-164078112-3	chr2	164077971	164078171	+	914.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021420, intron 1 of 10)	intron (NM_021420, intron 1 of 10)	3893.0	NM_021420	58231.0	Mm.234472	NM_021420	ENSMUSG00000018209	Stk4	AI447339|AU020804|Kas-2|Mst1|Ysk3	serine/threonine kinase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-19053764-4	chr10	19053671	19053871	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	-38361.0	NM_009397	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	2.77042672830055	1.85985021929027	3.54947687784675	3.25517015237621	1.65335217935577	2.32984470788017	3.69375318369916	3.19782284102707	-0.0868298616198356	0.915152289901097	0.998431161219273
Merged-chr7-44822217-2	chr7	44822052	44822252	+	793.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001171024, intron 1 of 8)	B2_Mm2|SINE|B2	-5494.0	NR_033136	107503.0	Mm.389890	NM_030693	ENSMUSG00000038539	Atf5	AFTA|Atf7|Atfx|ODA-10	activating transcription factor 5	protein-coding	-0.68063221780274	-0.670148869830999	-0.67358785862985	-0.248670345527081	-0.679979053862105	-0.669373100413457	-0.0913197828529291	-0.675775397699688	0.585979169389436	0.840982200956442	1
Merged-chr17-5895522-2	chr17	5895422	5895622	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025664, intron 4 of 17)	intron (NM_025664, intron 4 of 17)	-45758.0	NM_001113353	20975.0	Mm.236068	NM_011523	ENSMUSG00000023805	Synj2	AI481647|SJ2|mKIAA0348	synaptojanin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44849082-4	chr7	44848975	44849175	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290695)	promoter-TSS (NM_001290695)	4.0	NM_001042655	233204.0	Mm.27567	NM_144924	ENSMUSG00000038520	Tbc1d17	BC017607	TBC1 domain family, member 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171034436-2	chr1	171034336	171034536	+	567.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15510.0	NM_144559	246256.0	Mm.251254	NM_144559	ENSMUSG00000059089	Fcgr4	4833442P21Rik|CD16-2|FcgRIV|FcgammaRIV|Fcgr3a|Fcrl3	Fc receptor, IgG, low affinity IV	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97546487-4	chr11	97546377	97546577	+	810.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018873, intron 3 of 19)	CpG	28649.0	NM_018873	56013.0	Mm.342665	NM_018873	ENSMUSG00000038453	Srcin1	P140|SNIP|mKIAA1684|p140Cap	SRC kinase signaling inhibitor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-21194526-4	chr14	21194422	21194622	+	973.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134079, intron 4 of 10)	MER76|LTR|ERVL	118370.0	NM_001243041	11534.0	Mm.188734	NM_134079	ENSMUSG00000039197	Adk	2310026J05Rik|5033405D03Rik|AI255373|AI987814|Ak	adenosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-99645202-2	chr12	99645102	99645302	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	-17228.0	NR_045288	73457.0	Mm.383439	NR_045288	ENSMUSG00000100211	1700064M15Rik	-	RIKEN cDNA 1700064M15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-155488449-4	chr4	155488346	155488546	+	931.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2915.0	NM_001160017	14688.0	Mm.2344	NM_008142	ENSMUSG00000029064	Gnb1	AA409223|C77571|Gnb-1	guanine nucleotide binding protein (G protein), beta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-113612614-4	chr13	113612480	113612680	+	881.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130796, intron 1 of 1)	intron (NM_130796, intron 1 of 1)	5984.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-119594264-4	chr2	119594180	119594380	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015473)	promoter-TSS (NR_015473)	-16.0	NR_027832	66602.0	Mm.379181	NR_015473	ENSMUSG00000085438	1700020I14Rik	1190006L01Rik|4933437I03Rik|AI451541|AI585852|AW538376|AW558897|Cyrano	RIKEN cDNA 1700020I14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141170697-2	chr7	141170597	141170797	+	620.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001172100, intron 1 of 9)	intron (NM_001172100, intron 1 of 9)	-1761.0	NM_145135	107702.0	Mm.197493	NM_145135	ENSMUSG00000038650	Rnh1	AW546468|C80305|RNH	ribonuclease/angiogenin inhibitor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-59579866-1	chr12	59579766	59579966	+	914.0	f0_balb.idr	Intergenic	Intergenic	-360383.0	NM_001033156	70611.0	Mm.311026	NM_001033156	ENSMUSG00000035329	Fbxo33	5730501N20Rik|AI642135	F-box protein 33	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43046200-4	chr4	43046111	43046311	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172691)	promoter-TSS (NM_172691)	9.0	NR_045567	230088.0	Mm.260162	NM_172691	ENSMUSG00000036002	Fam214b	B230312A22Rik	family with sequence similarity 214, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-50286570-4	chr11	50286471	50286671	+	954.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175334, intron 1 of 4)	intron (NM_175334, intron 1 of 4)	5765.0	NM_175334	103806.0	Mm.51116	NM_175334	ENSMUSG00000050567	Maml1	AI644666|AW743257|D930008C07Rik|Mam-1|Mam1|mKIAA0200	mastermind like transcriptional coactivator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-94405465-3	chr11	94405369	94405569	+	957.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12493.0	NM_029600	76408.0	Mm.23942	NM_029600	ENSMUSG00000020865	Abcc3	1700019L09Rik|ABC31|MLP2|MOAT-D|MRP3	ATP-binding cassette, sub-family C (CFTR/MRP), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-31759556-4	chr16	31759451	31759651	+	947.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252436, intron 1 of 22)	intron (NM_001252436, intron 1 of 22)	5201.0	NM_001252436	13383.0	Mm.382	NM_007862	ENSMUSG00000022770	Dlg1	B130052P05Rik|Dlgh1|E-dlg/SAP97|SAP-97|SAP97|mKIAA4187	discs large MAGUK scaffold protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43040366-4	chr4	43040268	43040468	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253353)	promoter-TSS (NM_001253353)	-67.0	NM_001253354	230088.0	Mm.260162	NM_172691	ENSMUSG00000036002	Fam214b	B230312A22Rik	family with sequence similarity 214, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-54786099-4	chr14	54786005	54786205	+	820.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-4219.0	NM_016972	50934.0	Mm.276831	NM_016972	ENSMUSG00000022180	Slc7a8	AA408822|LAT2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	protein-coding	3.06271915420729	3.26644638053066	2.44952547343302	2.52147063046398	4.01093914600979	1.9319810515325	3.42282858841781	2.53539260897404	0.604409610067625	0.418763687017267	0.898591877339902
Merged-chr7-108814979-2	chr7	108814879	108815079	+	596.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11018.0	NM_146726	258721.0	Mm.377655	NM_146726	ENSMUSG00000066241	Olfr514	MOR268-1	olfactory receptor 514	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131528968-1	chr1	131528868	131529068	+	581.0	f0_balb.idr	intron (NM_175382, intron 1 of 3)	intron (NM_175382, intron 1 of 3)	1065.0	NM_175382	108900.0	Mm.31278	NM_175382	ENSMUSG00000055184	Fam72a	2700049P18Rik|P17	family with sequence similarity 72, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-118114067-3	chr7	118114082	118114282	+	695.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_170669, intron 3 of 4)	intron (NM_170669, intron 3 of 4)	1965.0	NM_170669	267019.0	Mm.288212	NM_170669	ENSMUSG00000008683	Rps15a	A630031B11Rik	ribosomal protein S15A	protein-coding	-0.409094344149525	-0.395788265409741	-0.217935391225164	-0.403506362836079	-0.128726660710552	-0.394807054737391	0.391635590745449	-0.402918708835034	2.76480944096699	0.265166257280058	1
Merged-chr2-68471314-4	chr2	68471159	68471359	+	934.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016866, intron 1 of 17)	CpG	722.0	NM_016866	53416.0	Mm.198414	NM_016866	ENSMUSG00000027030	Stk39	AW227544|AW556857|DCHT|RF005|Rnl5|SPAK	serine/threonine kinase 39	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-74485677-3	chr11	74485549	74485749	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001015046, intron 2 of 24)	intron (NM_001015046, intron 2 of 24)	104509.0	NM_001015046	380711.0	Mm.425690	NM_001015046	ENSMUSG00000038807	Rap1gap2	AU067654|Garnl4|Gm1561|mKIAA1039	RAP1 GTPase activating protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-80173124-1	chr11	80173024	80173224	+	558.0	f1_c57bl6.idr	intron (NM_172133, intron 7 of 10)	intron (NM_172133, intron 7 of 10)	-10748.0	NM_028019	71956.0	Mm.22985	NM_028019	ENSMUSG00000020707	Rnf135	0610037N03Rik|2410006N06Rik	ring finger protein 135	protein-coding	0.553323676807044	0.084733601582417	0.662829394387769	0.0737725167753518	0.0669955007914149	0.0861241622199433	0.779063059030255	0.0746086085636123	-0.465351609747032	0.831068233784354	1
Merged-chr7-139969381-2	chr7	139969281	139969481	+	845.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur2|SINE|Alu	9374.0	NM_001347614	381933.0	Mm.440431	NM_001033465	ENSMUSG00000073795	6430531B16Rik	Gm1093	RIKEN cDNA 6430531B16 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-120099657-4	chr1	120099555	120099755	+	937.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21264.0	NM_001037999	13167.0	Mm.2785	NM_007830	ENSMUSG00000026385	Dbi	ACBD1|Acbp|EP|endozepine	diazepam binding inhibitor	protein-coding	3.93234331823051	4.5080907860911	4.05010459084712	4.13208249912612	1.68552157039815	2.80724953180647	1.87888148170335	2.44195778027134	-3.12259241188872	1.09285955763213e-06	6.90112051182645e-05
Merged-chr14-25389362-2	chr14	25389262	25389462	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69823.0	NM_001310666	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-157445586-4	chr1	157445490	157445690	+	977.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12978.0	NM_001356418	226527.0	Mm.215960	NM_001033284	ENSMUSG00000033488	Cryzl2	-	crystallin zeta like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-127246035-4	chr6	127245904	127246104	+	852.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61963.0	NR_073373	232386.0	Mm.257367	NR_073373	ENSMUSG00000107153	Gm38404	D130058E03	predicted gene, 38404	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-127336047-4	chr2	127335946	127336146	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010090)	promoter-TSS (NM_010090)	-113.0	NM_010090	13537.0	Mm.4729	NM_010090	ENSMUSG00000027368	Dusp2	PAC1	dual specificity phosphatase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-56609545-4	chr13	56609465	56609665	+	979.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009369)	promoter-TSS (NM_009369)	-21.0	NM_009369	21810.0	Mm.14455	NM_009369	ENSMUSG00000035493	Tgfbi	68kDa|AI181842|AI747162|Beta-ig|big-h3	transforming growth factor, beta induced	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-102976084-4	chr14	102975985	102976185	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_177715)	TTS (NM_177715)	6547.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-132416650-6	chr1	132416563	132416763	+	668.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172516)	promoter-TSS (NM_172516)	-790.0	NM_172516	213452.0	Mm.257120	NM_172516	ENSMUSG00000042046	Dstyk	A930019K20Rik|C430014H23Rik|C820013G01|Ripk5	dual serine/threonine and tyrosine protein kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-89989129-4	chr11	89989080	89989280	+	831.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316372, intron 2 of 4)	intron (NM_001316372, intron 2 of 4)	13714.0	NM_008796	18559.0	Mm.5062	NM_008796	ENSMUSG00000020553	Pctp	PC-TP|StarD2	phosphatidylcholine transfer protein	protein-coding	-1.50569896748263	-1.4741587641146	-1.33362021798002	-1.34145502981133	-1.35422903981551	-1.47209183586223	-1.48153758377462	-1.49012916620317	-0.740961231518037	0.818881030173452	1
Merged-chr7-99157866-2	chr7	99157766	99157966	+	867.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026384, intron 6 of 7)	tRNA-Ala-GCA|tRNA|tRNA	-16722.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	0.015030248952894	1.30534537697911	0.03934290374482	0.0303725185527812	0.017349906203682	1.22598092016038	0.0418719041269807	0.0319537998871688	-0.156785667864595	0.941653816410691	0.998431161219273
Merged-chr13-33942425-2	chr13	33942325	33942525	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_040707, intron 1 of 4)	intron (NR_040707, intron 1 of 4)	-6342.0	NM_001164117	20719.0	Mm.252210	NM_009254	ENSMUSG00000060147	Serpinb6a	4930482L21Rik|D330015H01Rik|PI-6|Serpinb6|Spi3|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 6a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-117042012-1	chr4	117041912	117042112	+	862.0	f1_c57bl6.idr	intron (NM_001111277, intron 3 of 11)	intron (NM_001111277, intron 3 of 11)	22610.0	NM_001111277	108067.0	Mm.34612	NM_175135	ENSMUSG00000028683	Eif2b3	1190002P15Rik	eukaryotic translation initiation factor 2B, subunit 3	protein-coding	2.21987490874259	2.74781172368846	2.53987041486994	3.60854428104668	2.23902089443886	1.77354710952656	2.29092226055622	2.47943270063072	-1.3691319542378	0.0893606909642743	0.461470403237889
Merged-chr4-135239351-2	chr4	135239251	135239451	+	817.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_013885, intron 1 of 5)	ORR1D2|LTR|ERVL-MaLR	33409.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167747645-4	chr2	167747544	167747744	+	973.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56467.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3796894-2	chr4	3796794	3796994	+	891.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38761.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4135709-3	chr19	4135635	4135835	+	753.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_144532, exon 6 of 6)	3' UTR (NM_144532, exon 6 of 6)	3874.0	NM_144532	73660.0	Mm.379226	NM_144532	ENSMUSG00000024842	Cabp4	2410038D05Rik	calcium binding protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-28418257-4	chr2	28418146	28418346	+	715.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29695.0	NM_001005420	241289.0	Mm.330095	NM_001005420	ENSMUSG00000035829	Ppp1r26	Gm347|Kiaa0649|mKIAA0649	protein phosphatase 1, regulatory subunit 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-88027569-1	chr6	88027469	88027669	+	622.0	f0_balb.idr	intron (NM_001293652, intron 1 of 7)	intron (NM_001293652, intron 1 of 7)	-7774.0	NM_001293654	19349.0	Mm.333233	NM_009005	ENSMUSG00000079477	Rab7	Rab7a	RAB7, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128815705-4	chr2	128815604	128815804	+	894.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2599.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	0.41939439371833	0.0419179769415009	0.0356106676484448	0.0307244783402831	0.0237883563023677	0.568310736597424	0.0370042483390924	0.874201807547308	2.05275785139637	0.35252961953049	1
Merged-chr1-71729137-3	chr1	71729026	71729226	+	737.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	75791.0	NR_040308	100042814.0	Mm.405775	NR_040308	ENSMUSG00000073652	Apol7d	Gm15456	apolipoprotein L 7d	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-53405094-3	chr5	53404959	53405159	+	922.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	137953.0	NM_001145433	66278.0	Mm.27900	NM_001145433	ENSMUSG00000061461	Smim20	1110067B18Rik|1810013D10Rik|N28078	small integral membrane protein 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80928570-4	chr7	80928470	80928670	+	910.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019951, intron 2 of 5)	intron (NM_019951, intron 2 of 5)	18980.0	NM_019951	56529.0	Mm.43760	NM_019951	ENSMUSG00000025724	Sec11a	1810012E07Rik|18kDa|Sec11l1|Sid2895p|Spc18|sid2895	SEC11 homolog A, signal peptidase complex subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-105702202-1	chr1	105702102	105702302	+	588.0	f1_c57bl6.idr	intron (NM_173187, intron 10 of 28)	intron (NM_173187, intron 10 of 28)	38341.0	NM_029349	227446.0	Mm.337339	NM_029349	ENSMUSG00000026319	2310035C23Rik	6430401N10|Kiaa1468|Relch|mKIAA1468	RIKEN cDNA 2310035C23 gene	protein-coding	-1.50811478453619	-0.99851579554048	-1.48484165847197	-1.49312904261012	-1.50577282675516	-1.47256636097272	-1.48255773576353	-1.49164560481169	-2.24133836997777	0.518237887813808	1
Merged-chr10-79924888-2	chr10	79924788	79924988	+	682.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 3 of 4)	intron (NR_038088, intron 3 of 4)	-2155.0	NM_001288626	13496.0	Mm.301282	NM_007880	ENSMUSG00000019564	Arid3a	Bright|Dri1|Dril1	AT rich interactive domain 3A (BRIGHT-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-28403452-2	chr15	28403352	28403552	+	626.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_133365, exon 61 of 79)	exon (NM_133365, exon 61 of 79)	199686.0	NM_133365	110082.0	Mm.248464	NM_133365	ENSMUSG00000022262	Dnah5	AU022615|Dnahc5|Mdnah5|b2b1134Clo|b2b1154Clo|b2b1537Clo|b2b1565Clo|b2b3491Clo|b2b601Clo|mKIAA1603	dynein, axonemal, heavy chain 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-115130320-3	chr13	115130222	115130422	+	607.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28358.0	NM_001033228	109700.0	Mm.317280	NM_001033228	ENSMUSG00000042284	Itga1	CD49A|E130012M19Rik|Vla1	integrin alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-75772773-2	chr12	75772673	75772873	+	729.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-37044.0	NM_030750	81535.0	Mm.280199	NM_030750	ENSMUSG00000021054	Sgpp1	AI463453|SPP|SPP1|Spph1	sphingosine-1-phosphate phosphatase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-35135684-4	chr2	35135581	35135781	+	890.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_012018, exon 13 of 44)	exon (NM_012018, exon 13 of 44)	3447.0	NM_001290635	26920.0	Mm.231332	NM_012018	ENSMUSG00000057110	Cntrl	6720467O09Rik|AA968343|Cep1|Cep110|IB3/5|Ma2a8|b2b1468.1Clo|b2b1468Clo	centriolin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-75772848-4	chr10	75772775	75772975	+	902.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010027, exon 2 of 3)	exon (NM_010027, exon 2 of 3)	499.0	NM_010027	13202.0	Mm.298947	NM_010027	ENSMUSG00000001666	Ddt	C78655	D-dopachrome tautomerase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105564433-2	chr8	105564333	105564533	+	759.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013477, intron 1 of 7)	intron (NM_013477, intron 1 of 7)	1631.0	NM_013477	11972.0	Mm.17708	NM_013477	ENSMUSG00000013160	Atp6v0d1	AI267038|Ac39|Atp6d|P39|VATX|Vma6	ATPase, H+ transporting, lysosomal V0 subunit D1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-134615653-2	chr4	134615553	134615753	+	846.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_207237, intron 2 of 11)	B4A|SINE|B4	-47802.0	NR_105829	102465216.0		NR_105829	ENSMUSG00000099289	Mir6403	Gm27992|mmu-mir-6403	microRNA 6403	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-97297806-2	chr7	97297706	97297906	+	711.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162477, intron 3 of 9)	intron (NM_001162477, intron 3 of 9)	28158.0	NM_001177412	244144.0	Mm.297541	NM_001177412	ENSMUSG00000035713	Usp35	Gm1088|Gm493	ubiquitin specific peptidase 35	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64336917-4	chr5	64336816	64337016	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 16 of 18)	intron (NM_001289514, intron 16 of 18)	106559.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	2.19393190112752	2.23835259527342	2.55725748570898	1.84485260866374	2.11804288062047	1.33305763522737	2.29415904954044	1.85369909552606	-0.710514788295606	0.453859414043763	0.919120493489568
Merged-chr7-79728439-4	chr7	79728339	79728539	+	846.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175640, intron 3 of 8)	intron (NM_175640, intron 3 of 8)	4337.0	NM_175640	103968.0	Mm.254917	NM_175640	ENSMUSG00000030546	Plin1	6030432J05Rik|Peri|Plin	perilipin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-46479498-4	chr11	46479397	46479597	+	904.19165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_134250, exon 7 of 7)	3' UTR (NM_134250, exon 7 of 7)	24566.0	NM_134250	171285.0	Mm.72168	NM_134250	ENSMUSG00000020399	Havcr2	TIM-3|Tim3|Timd3	hepatitis A virus cellular receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-24575897-3	chr16	24575798	24575998	+	778.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 4 of 12)	intron (NM_178665, intron 4 of 12)	46584.0	NR_038091	624582.0	Mm.439775	NR_038091		Morf4l1-ps1	A730098P11Rik	mortality factor 4 like 1, pseudogene 1	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-153488744-2	chr1	153488644	153488844	+	665.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1084.0	NM_007842	13211.0	Mm.20000	NM_007842	ENSMUSG00000042699	Dhx9	AI326842|Ddx9|HEL-5|NDHII|RHA|mHEL-5	DEAH (Asp-Glu-Ala-His) box polypeptide 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-6735616-2	chr17	6735516	6735716	+	617.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_183368, intron 7 of 8)	RSINE1|SINE|B4	29786.0	NM_183368	83672.0	Mm.442201	NM_031395	ENSMUSG00000041831	Sytl3	A430092N21|Slp3|Slp3-a|Slp3-b|mFLJ00307	synaptotagmin-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-8778117-4	chr10	8778040	8778240	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 8 of 19)	intron (NM_175155, intron 8 of 19)	107930.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	4.82018569987855	1.97071896718749	4.11110575109671	4.95296096165514	5.11155124518	4.46653891301063	3.37170567042316	4.45070296872941	0.17585284229491	0.862388816733946	0.998431161219273
Merged-chr18-67390705-4	chr18	67390615	67390815	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026473)	promoter-TSS (NM_026473)	-16.0	NM_026473	67951.0	Mm.181860	NM_026473	ENSMUSG00000001473	Tubb6	2310057H16Rik|BB220206	tubulin, beta 6 class V	protein-coding	5.82408097034705	5.73631282219131	6.15482810945066	5.01767599694323	6.47234897798708	5.85371338639282	6.36421235936799	5.84678017104547	0.473133064378259	0.090410697770943	0.464493670506326
Merged-chr4-107237887-2	chr4	107237787	107237987	+	555.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029985, intron 6 of 7)	intron (NM_029985, intron 6 of 7)	15646.0	NM_029985	77809.0	Mm.29681	NM_029985	ENSMUSG00000028617	Lrrc42	A930011F22Rik|AA536996	leucine rich repeat containing 42	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-139213331-4	chr4	139213240	139213440	+	932.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	19229.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	4.06142503263899	2.95012215707268	3.96739140847749	3.18596274846673	3.89212723947316	2.83069036575015	1.66027292758786	3.00631153345009	-0.837025325679087	0.235159934896784	0.731386965587429
Merged-chr10-99599561-1	chr10	99599461	99599661	+	974.3333130000001	f0_c57.idr	Intergenic	IAPLTR2_Mm|LTR|ERVK	-9610.0	NR_038019	100504202.0	Mm.403801	NR_038019	ENSMUSG00000111962	Gm20110	-	predicted gene, 20110	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-104946835-4	chr5	104946733	104946933	+	748.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030239, intron 13 of 15)	Lx8b|LINE|L1	35884.0	NM_030239	27405.0	Mm.389663	NM_030239	ENSMUSG00000029299	Abcg3	Abcp2|Mxr2	ATP binding cassette subfamily G member 3	protein-coding	1.82269647810319	3.17579248520164	1.42482945126173	1.77674367416877	2.78800910038094	1.91798196667067	1.15986400887715	1.78673514366535	-0.427808000291452	0.683213564524974	0.995882295196263
Merged-chr11-97900012-4	chr11	97899902	97900102	+	891.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15848.0	NM_001081435	72973.0	Mm.245939	NM_001081435	ENSMUSG00000070336	Fbxo47	2900052P03Rik|Gm1562	F-box protein 47	protein-coding	3.47860237311707	4.27832208779583	4.47343704585806	4.2319520141996	3.09617080398458	3.59173169997658	3.56114500865375	2.62983439199726	-1.29682096048222	0.0135823124891817	0.135565997842739
Merged-chr2-60721185-2	chr2	60721085	60721285	+	573.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159564, intron 1 of 17)	intron (NM_001159564, intron 1 of 17)	1418.0	NM_001159564	16420.0	Mm.98193	NM_021359	ENSMUSG00000026971	Itgb6	2210409C20Rik|4831415H04Rik	integrin beta 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-84354958-2	chr18	84354858	84355058	+	568.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033341, intron 4 of 8)	intron (NM_001033341, intron 4 of 8)	234546.0	NM_001033341	240476.0	Mm.329575	NM_001033341	ENSMUSG00000048410	Zfp407	6430585N13Rik|Gm333|Gm334|Gm948|ZNF407	zinc finger protein 407	protein-coding	-0.226235296896101	0.595109062818019	-0.213198233288771	-0.218068504042706	-0.225013795898844	0.608384863201147	-0.211812549537951	-0.217215065379025	0.0395006580732415	0.987233647591244	1
Merged-chr2-122407723-6	chr2	122407576	122407776	+	794.236084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-33144.0	NM_172980	269346.0	Mm.29510	NM_172980	ENSMUSG00000027219	Slc28a2	2010208B10Rik|B430217P18|BB152493|Cnt2|SPNT	solute carrier family 28 (sodium-coupled nucleoside transporter), member 2	protein-coding	1.16111669866809	0.464820938864406	0.657780640399908	0.446711464942502	1.17517569251483	0.467095227738483	1.41356771905456	0.448104651315354	1.06721087166897	0.544495016303055	0.955840500234695
Merged-chr8-121931555-3	chr8	121931465	121931665	+	738.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007608, intron 2 of 6)	MTC|LTR|ERVL-MaLR	13347.0	NM_007608	12352.0	Mm.116761	NM_007608	ENSMUSG00000025317	Car5a	CAV|Ca5a|Car5	carbonic anhydrase 5a, mitochondrial	protein-coding	2.26015154774024	1.4491114875983	1.15841032204129	2.30359120468818	1.7876750677328	1.19169052539984	2.39409343711583	2.48159754216762	0.421762025638734	0.704874149960739	0.998431161219273
Merged-chr12-104175832-3	chr12	104175742	104175942	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21970.0	NM_008458	16625.0	Mm.422814	NM_008458	ENSMUSG00000066361	Serpina3c	1A1|Kalbp|Klkbp|spi2	serine (or cysteine) peptidase inhibitor, clade A, member 3C	protein-coding	6.00473395055331	5.43468608622151	6.16444214807106	5.11799021570677	3.87195459254947	3.42864038514975	3.29325507529054	3.03700818558572	-2.81540125392699	3.49328775761705e-12	1.04475580814067e-09
Merged-chr12-16875016-1	chr12	16874916	16875116	+	882.0	f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-19962.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99134081-4	chr7	99133984	99134184	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 1 of 14)	intron (NM_178635, intron 1 of 14)	7060.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-78113320-2	chr8	78113220	78113420	+	844.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-100022.0	NM_183096	73301.0	Mm.61243	NM_183096	ENSMUSG00000037101	Ttc29	1700031F13Rik	tetratricopeptide repeat domain 29	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126794877-2	chr7	126794777	126794977	+	715.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001177308)	TTS (NM_001177308)	-2330.0	NM_019674	56420.0	Mm.41998	NM_019674	ENSMUSG00000030697	Ppp4c	1110002D08Rik|AU016079|PP-X|PP4C|Ppx|pp4	protein phosphatase 4, catalytic subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-12322988-4	chr15	12322891	12323091	+	665.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025673, intron 1 of 3)	intron (NM_025673, intron 1 of 3)	1495.0	NM_025673	66629.0	Mm.157655	NM_025673	ENSMUSG00000022200	Golph3	4733401N08Rik|5730410D03Rik|AW413496	golgi phosphoprotein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-73716035-4	chr12	73715934	73716134	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008856, intron 9 of 13)	intron (NM_008856, intron 9 of 13)	131238.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-121363169-2	chr10	121363069	121363269	+	921.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MEc|LINE|L1	-1921.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-110006591-4	chr7	110006447	110006647	+	998.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_037959)	promoter-TSS (NR_037959)	99.0	NR_037959	69781.0	Mm.440728	NR_037959	ENSMUSG00000101585	1600010M07Rik	-	RIKEN cDNA 1600010M07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-75363461-4	chr18	75363379	75363579	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155535, intron 6 of 6)	intron (NR_155535, intron 6 of 6)	3609.0	NR_155535	102636262.0	Mm.421168	NR_155535		Gm20544	-	predicted gene 20544	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-93826376-2	chr1	93826276	93826476	+	610.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_178882, exon 2 of 10)	exon (NM_178882, exon 2 of 10)	1136.0	NM_001310767	98314.0	Mm.383401	NM_178882	ENSMUSG00000073609	D2hgdh	AA408776|AA408778|AI325464	D-2-hydroxyglutarate dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80993964-2	chr10	80993864	80994064	+	732.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038655, intron 2 of 3)	intron (NM_001038655, intron 2 of 3)	7401.0	NM_001038655	14708.0	Mm.222496	NM_010319	ENSMUSG00000048240	Gng7	AI840417	guanine nucleotide binding protein (G protein), gamma 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-58217761-2	chr11	58217624	58217824	+	695.799988	f1_balb.idr|f1_c57bl6.idr	intron (NM_019440, intron 1 of 1)	intron (NM_019440, intron 1 of 1)	2747.0	NM_019440	54396.0	Mm.458517	NM_019440	ENSMUSG00000069874	Irgm2	AI481100|GTPI|Ifggd2|Iigp2	immunity-related GTPase family M member 2	protein-coding	2.75167773891329	3.26733434025972	2.66749282946025	3.57299671645713	2.93871295444058	2.49875664402853	1.5507023119122	2.71801030959768	-1.08216676169361	0.15307665065697	0.607479709343656
Merged-chr6-89338401-2	chr6	89338301	89338501	+	979.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008881, intron 9 of 31)	intron (NM_008881, intron 9 of 31)	24212.0	NM_008881	18844.0	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4874480-2	chr16	4874380	4874580	+	629.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_145359)	TTS (NM_145359)	5371.0	NM_145359	207740.0	Mm.268895	NM_145359	ENSMUSG00000039568	Ubald1	1500031H01Rik|BC013706|Fam100a	UBA-like domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-24166294-4	chr5	24166201	24166401	+	891.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153092, intron 1 of 6)	RMER6A|LTR|ERVK	1338.0	NM_001346582	231042.0	Mm.45513	NM_153092	ENSMUSG00000048439	Nupl2	AV116043|CG1|NLP-1|Nlp1	nucleoporin like 2	protein-coding	2.7823149022905	3.2777603111875	3.0142336020032	2.75335413183101	2.63417595079826	2.45200079433047	1.53392619207427	2.66678508593377	-1.11969986552925	0.142464664686122	0.589410705828996
Merged-chr3-16184680-4	chr3	16184558	16184758	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172677, intron 2 of 5)	intron (NM_172677, intron 2 of 5)	1493.0	NM_172677	229096.0	Mm.23834	NM_172677	ENSMUSG00000047213	Ythdf3	9130022A11Rik	YTH domain family 3	protein-coding	3.16324372627305	3.1352312831807	2.46200010142302	2.65021500893838	3.1246032347352	2.70902258828962	2.85908682996912	2.77342737922709	-0.0210524973355121	0.974977782981838	0.998431161219273
Merged-chr8-71668815-3	chr8	71668704	71668904	+	969.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029873, intron 1 of 41)	intron (NM_001029873, intron 1 of 41)	2953.0	NM_001029873	382018.0	Mm.334606	NM_001029873	ENSMUSG00000034799	Unc13a	2410078G03Rik|Munc13-1	unc-13 homolog A (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-59073259-4	chr19	59073139	59073339	+	949.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114312, intron 1 of 16)	intron (NM_001114312, intron 1 of 16)	2830.0	NM_175172	71653.0	Mm.37338	NM_175172	ENSMUSG00000041362	Shtn1	4930506M07Rik|Shootin1|mKIAA1598	shootin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-86045637-2	chr12	86045537	86045737	+	620.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081423, intron 33 of 33)	intron (NM_001081423, intron 33 of 33)	33404.0	NM_009368	21809.0	Mm.3992	NM_009368	ENSMUSG00000021253	Tgfb3	TGF-beta-3|Tgfb-3	transforming growth factor, beta 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-105050058-4	chr3	105049934	105050134	+	950.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030249, intron 1 of 5)	MTD|LTR|ERVL-MaLR	2919.0	NM_001163332	80281.0	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-112137773-4	chr13	112137646	112137846	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CAAAA)n|Simple_repeat|Simple_repeat	-150705.0	NM_001168403	77318.0	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-52328028-1	chr14	52327928	52328128	+	754.0	f1_balb.idr	intron (NM_015772, intron 1 of 1)	intron (NM_015772, intron 1 of 1)	642.0	NM_015772	50524.0	Mm.39487	NM_015772	ENSMUSG00000049532	Sall2	AI225809|AW559097|Msal-2|Sal-2|mKIAA0360|p150(Sal2)	spalt like transcription factor 2	protein-coding	-0.2656710630734	-0.546262347207394	-0.550841767176131	-0.554392452752248	-0.559436690347387	-0.545233570821315	0.377804451100011	-0.553771041409355	2.05196954387551	0.453853411834089	1
Merged-chr18-32816789-4	chr18	32816684	32816884	+	883.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033206)	promoter-TSS (NR_033206)	-76.0	NR_033206	53603.0	Mm.143716	NM_021367	ENSMUSG00000024379	Tslp	-	thymic stromal lymphopoietin	protein-coding	1.15327935828547	0.792665437891899	1.05813696253284	0.573986978648958	1.32727579401383	0.592317761450865	0.583119658067609	1.14130414375207	0.224127909903058	0.88947306086193	1
Merged-chr15-93216424-2	chr15	93216324	93216524	+	770.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58755.0	NM_001357006	223827.0	Mm.22819	NM_001033275	ENSMUSG00000036197	Gxylt1	Glt8d3|Gm1228|Gm87	glucoside xylosyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100963325-1	chr7	100963225	100963425	+	750.666687	f1_balb.idr	intron (NM_183168, intron 1 of 2)	intron (NM_183168, intron 1 of 2)	1041.0	NM_183168	233571.0	Mm.235193	NM_183168	ENSMUSG00000048779	P2ry6	2010204J23Rik|P2Y6	pyrimidinergic receptor P2Y, G-protein coupled, 6	protein-coding	1.94213918470886	1.1077557742333	2.12299915051632	1.05799849000206	1.43419667880637	2.52842376313326	2.59738608393908	1.50771547591191	1.22553423270806	0.27881514762729	0.782334674124706
Merged-chr19-8786328-4	chr19	8786245	8786445	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177798)	promoter-TSS (NM_001177798)	-29.0	NM_146092	225895.0	Mm.220886	NM_146092	ENSMUSG00000003680	Taf6l	2810417N14Rik|BB223262|C530024J06Rik|Paf65a	TATA-box binding protein associated factor 6 like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-64842676-1	chr14	64842576	64842776	+	636.5	f0_balb.idr	intron (NM_177338, intron 6 of 9)	intron (NM_177338, intron 6 of 9)	107181.0	NM_177338	219150.0	Mm.344074	NM_177338	ENSMUSG00000021972	Hmbox1	AI451877|AI604847|F830020C16Rik	homeobox containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-66106596-4	chr5	66106497	66106697	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127382, intron 2 of 7)	PB1D7|SINE|Alu	-8418.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-84172018-2	chr12	84171898	84172098	+	675.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163501, intron 2 of 12)	intron (NM_001163501, intron 2 of 12)	22017.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-136396928-2	chr5	136396828	136397028	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291238, intron 3 of 22)	ID_B1|SINE|B4	-21125.0	NR_030500	723975.0		NR_030500	ENSMUSG00000106479	Mir721	Mirn721|miRY|mir-721|mmu-mir-721	microRNA 721	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-29534439-2	chr10	29534339	29534539	+	760.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028351, intron 1 of 4)	intron (NM_028351, intron 1 of 4)	1428.0	NM_028351	72780.0	Mm.45191	NM_028351	ENSMUSG00000019880	Rspo3	2810459H04Rik|AW742308|Cristin1|Thsd2	R-spondin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-114648043-2	chr4	114647943	114648143	+	542.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-173677.0	NR_033617	433746.0	Mm.388908	NR_033617	ENSMUSG00000055198	Gm12830	-	predicted gene 12830	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-123321346-2	chr7	123321246	123321446	+	833.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001316713, intron 6 of 19)	intron (NM_001316713, intron 6 of 19)	48569.0	NM_001122643	70497.0	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-80924405-4	chr12	80924306	80924506	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033786)	promoter-TSS (NR_033786)	41.0	NR_033786	67340.0	Mm.386790	NR_033786	ENSMUSG00000101912	1700052I22Rik	-	RIKEN cDNA 1700052I22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-134923576-4	chr4	134923467	134923667	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023665)	promoter-TSS (NM_023665)	-58.0	NM_023665	27981.0	Mm.331964	NM_023665	ENSMUSG00000037266	Rsrp1	2700043I21Rik|D4Ucla2|D4Wsu53e	arginine/serine rich protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-94387063-1	chr13	94386963	94387163	+	750.0	f0_balb.idr	intron (NM_009680, intron 1 of 26)	L1MD2|LINE|L1	28103.0	NM_009680	11774.0	Mm.21185	NM_009680	ENSMUSG00000021686	Ap3b1	AP-3|AU015684|C78395|Hps2|beta3A|pe|pearl|rim2	adaptor-related protein complex 3, beta 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-22028298-2	chr11	22028198	22028398	+	744.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252515, intron 21 of 24)	Lx2B2|LINE|L1	-26647.0	NM_011023	18423.0	Mm.129663	NM_011023	ENSMUSG00000005917	Otx1	A730044F23Rik|jv	orthodenticle homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4127192-2	chr19	4127092	4127292	+	924.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001078649, intron 3 of 7)	intron (NM_001078649, intron 3 of 7)	1232.0	NM_025889	66990.0	Mm.276255	NM_025889		Tmem134	2410001H17Rik|AI463452	transmembrane protein 134	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88495910-2	chr3	88495810	88496010	+	681.200012	f1_balb.idr|f1_c57bl6.idr	intron (NM_001002011, intron 1 of 11)	intron (NM_001002011, intron 1 of 11)	-2598.0	NM_019390	16905.0	Mm.243014	NM_019390	ENSMUSG00000028063	Lmna	Dhe	lamin A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-7852063-4	chr10	7851956	7852156	+	959.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172785, intron 2 of 5)	intron (NM_172785, intron 2 of 5)	15675.0	NR_039563	100628581.0		NR_039563	ENSMUSG00000093060	Mir5104	mir-5104|mmu-mir-5104|mu-mir-5104	microRNA 5104	ncRNA	4.33155659001877	4.30379938366553	4.10612193972733	3.86466520246503	4.04927707904239	4.65337269201824	3.50060374470574	4.24169570990177	0.00686551567743294	0.987611074443648	0.998431161219273
Merged-chr17-71144480-4	chr17	71144380	71144580	+	912.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39052.0	NM_001357791	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	2.26776008446455	2.36920254811572	1.44013237213803	2.12089634419609	1.80859696296412	2.3873903070674	1.44938506724618	1.41297047722236	-0.70722831196388	0.484305852758471	0.931207887927275
Merged-chr2-72372485-2	chr2	72372385	72372585	+	965.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023057, intron 7 of 19)	intron (NM_023057, intron 7 of 19)	86784.0	NM_178084	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-122627708-2	chr6	122627628	122627828	+	988.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_139218, intron 1 of 3)	intron (NM_139218, intron 1 of 3)	1304.0	NM_139218	73708.0	Mm.27982	NM_139218	ENSMUSG00000046323	Dppa3	2410075G02Rik|PCG7|PGC7|Stella	developmental pluripotency-associated 3	protein-coding	0.927071391100435	1.51446075858761	0.77870018713622	1.51857736411622	0.7504931545601	1.52771468805936	1.78703431351649	0.973680832009125	0.375983886297912	0.786997173589546	0.998431161219273
Merged-chr10-117792298-1	chr10	117792198	117792398	+	854.6666869999999	f0_balb.idr	intron (NM_134010, intron 1 of 27)	CpG	407.0	NM_134010	103468.0	Mm.12568	NM_134010	ENSMUSG00000052798	Nup107	AW541137|C76801	nucleoporin 107	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-102187025-2	chr1	102186925	102187125	+	582.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	1031257.0	NR_037989	100504525.0	Mm.87065	NR_037989	ENSMUSG00000100684	Gm20268	-	predicted gene, 20268	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-49247158-2	chr7	49247107	49247307	+	657.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_175272, intron 1 of 37)	intron (NM_175272, intron 1 of 37)	1018.0	NM_175272	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-83040952-2	chr13	83040852	83041052	+	713.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD-int|LTR|ERVL-MaLR	-342619.0	NR_039537	100628621.0		NR_039537	ENSMUSG00000106655	Mir3961	mmu-mir-3961	microRNA 3961	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-130823832-2	chr4	130823732	130823932	+	932.25	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011520, exon 5 of 5)	3' UTR (NM_011520, exon 5 of 5)	31295.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-114932175-2	chr13	114932075	114932275	+	559.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008396)	promoter-TSS (NM_008396)	-75.0	NM_008396	16398.0	Mm.5007	NM_008396	ENSMUSG00000015533	Itga2	CD49B|DX5|GPIa	integrin alpha 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-46912663-1	chr15	46912563	46912763	+	609.0	f1_c57bl6.idr	Intergenic	Lx|LINE|L1	289358.0	NR_045811	75281.0	Mm.159487	NR_045811	ENSMUSG00000051198	4930548G14Rik	-	RIKEN cDNA 4930548G14 gene	ncRNA	0.769444221768605	0.56235345655339	0.0585218043712971	0.0539987401921363	0.535708509016	0.0656938345149528	0.0598137108547533	0.0547893550614867	-1.4255857680678	0.518964819788821	1
Merged-chr4-150582195-1	chr4	150582095	150582295	+	548.0	f1_c57bl6.idr	intron (NM_001085492, intron 12 of 22)	intron (NM_001085492, intron 12 of 22)	69979.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	-0.971312285390935	-1.32150654078059	-1.33147993744313	-1.33967238241123	-1.35121754901196	-1.3193452641188	-1.17229511841967	-1.33820593867886	-0.987986103315274	0.773449200295012	1
Merged-chr19-46534778-2	chr19	46534685	46534885	+	569.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019718, intron 5 of 5)	intron (NM_019718, intron 5 of 5)	33137.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83327137-2	chr6	83327037	83327237	+	569.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145571, intron 1 of 5)	L1M4|LINE|L1	1098.0	NM_145571	232157.0	Mm.29500	NM_145571	ENSMUSG00000043131	Mob1a	4022402H07Rik|MOB1|MOB4B|Mobk1b|Mobkl1b	MOB kinase activator 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-45060356-4	chr19	45060257	45060457	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR25A|LTR|ERVK	12781.0	NM_001362381	94280.0	Mm.36169	NM_053197	ENSMUSG00000025212	Sfxn3	-	sideroflexin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-181193734-2	chr2	181193634	181193834	+	628.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	6487.0	NM_001356427	66496.0	Mm.213943	NM_025598	ENSMUSG00000016344	Ppdpf	0610012G23Rik|2610317A05Rik|2700038C09Rik|3110053G12Rik	pancreatic progenitor cell differentiation and proliferation factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-35584438-4	chr5	35584331	35584531	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030721, intron 2 of 18)	intron (NM_030721, intron 2 of 18)	1397.0	NM_030721	80911.0	Mm.291503	NM_030721	ENSMUSG00000029098	Acox3	BI685180|EST-s59|PCOX	acyl-Coenzyme A oxidase 3, pristanoyl	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-84513586-4	chr11	84513479	84513679	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019816)	promoter-TSS (NM_019816)	-78.0	NM_019816	56321.0	Mm.257482	NM_019816	ENSMUSG00000018697	Aatf	4933415H02Rik|5830465M17Rik|Che-1|Trb	apoptosis antagonizing transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-52630689-4	chr1	52630588	52630788	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001142647)	promoter-TSS (NM_001142647)	-17.0	NR_024590	227094.0	Mm.83541	NM_172654	ENSMUSG00000043015	Nemp2	5330401P04Rik|9830163O08|Tmem194b	nuclear envelope integral membrane protein 2	protein-coding	4.78513929791108	3.90152968081262	3.41688442069916	4.48179031919556	4.09262606561335	3.45904590416617	3.80094739075102	3.43064979942679	-0.726369542428659	0.144676995091743	0.5945996530409
Merged-chr16-17489587-2	chr16	17489487	17489687	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175178)	promoter-TSS (NM_175178)	-90.0	NM_175178	72168.0	Mm.40038	NM_175178	ENSMUSG00000022763	Aifm3	2810401C16Rik|AI840249|Aifl	apoptosis-inducing factor, mitochondrion-associated 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-45346564-4	chr2	45346466	45346666	+	880.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-229124.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-112996646-2	chr13	112996546	112996746	+	568.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037914, intron 3 of 6)	intron (NM_001037914, intron 3 of 6)	2778.0	NM_001037914	622408.0	Mm.360976	NM_001037914	ENSMUSG00000074651	Mcidas	EG622408|Gm6320|Idas|Mci|Mcin	multiciliate differentiation and DNA synthesis associated cell cycle protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84285768-3	chr8	84285616	84285816	+	888.5277710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15314.0	NM_026350	67736.0	Mm.30095	NM_026350	ENSMUSG00000004994	Ccdc130	4930527D15Rik|C77430	coiled-coil domain containing 130	protein-coding	1.41921383002516	1.5654012405888	1.80209020167427	1.75251165929216	1.96656155939379	2.11226346096335	1.68262273734637	1.31946497021089	0.528167798132626	0.614456871084229	0.977250439470701
Merged-chr3-95694591-4	chr3	95694498	95694698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6681.0	NM_001301705	229595.0	Mm.490574	NM_144899	ENSMUSG00000015850	Adamtsl4	ADAMTSL-4|Tsrc1	ADAMTS-like 4	protein-coding	3.11088331546836	3.046654534416	2.943438323386	3.27498255367499	1.47523825410478	3.26308600264647	3.24020830919727	2.52735163223848	-0.521249744128228	0.487499860996023	0.932902141745994
Merged-chr2-127831525-2	chr2	127831425	127831625	+	560.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009772, intron 1 of 24)	CpG	334.0	NM_001113179	12235.0	Mm.2185	NM_009772	ENSMUSG00000027379	Bub1	AL022991|Bub1a|C80208|D2Xrf87	BUB1, mitotic checkpoint serine/threonine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114542322-3	chr11	114542220	114542420	+	986.7222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-93460.0	NR_027643	319819.0	Mm.50754	NM_177008	ENSMUSG00000062391	4932435O22Rik	-	RIKEN cDNA 4932435O22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-34958726-8	chr18	34958623	34958823	+	998.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4372.0	NM_010481	15526.0	Mm.209419	NM_010481	ENSMUSG00000024359	Hspa9	74kDa|Csa|Grp75|Hsc74|Hsp74|Hsp74a|Hspa9a|Mortalin|Mot-2|Mot2|Mthsp70|Pbp74	heat shock protein 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-24688435-2	chr13	24688335	24688535	+	600.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080381, intron 8 of 14)	MTC|LTR|ERVL-MaLR	49787.0	NM_029679	193385.0	Mm.217319	NM_029679	ENSMUSG00000036006	Ripor2	Fam65b	RHO family interacting cell polarization regulator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97431736-4	chr6	97431622	97431822	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	27564.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-162976080-4	chr2	162975974	162976174	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001081338, exon 23 of 23)	3' UTR (NM_001081338, exon 23 of 23)	-11407.0	NM_001291154	27219.0	Mm.26462	NM_013731	ENSMUSG00000017868	Sgk2	AI098171|AW146006|Sgkl	serum/glucocorticoid regulated kinase 2	protein-coding	1.89883137956157	1.37726275370653	2.25995328944211	2.00629806257283	1.91530354129545	1.13338560653428	1.11088334135011	2.20435080825961	-0.637785276111628	0.579080825333803	0.965985075107763
Merged-chr6-82774541-4	chr6	82774439	82774639	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013820)	promoter-TSS (NM_013820)	-85.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-5061910-4	chr11	5061798	5061998	+	813.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144560, intron 6 of 6)	CpG	3429.0	NM_144560	78926.0	Mm.44591	NM_030228	ENSMUSG00000034201	Gas2l1	4930500E24Rik|D0Jmb1|Gar22|TU-71.1	growth arrest-specific 2 like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-93992976-2	chr11	93992876	93993076	+	654.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-3115.0	NM_001199203	70834.0	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-108292285-2	chr9	108292185	108292385	+	579.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025449, intron 1 of 5)	intron (NM_025449, intron 1 of 5)	1828.0	NM_025449	66257.0	Mm.10407	NM_025449	ENSMUSG00000032606	Nicn1	1500032A17Rik	nicolin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-16889644-4	chr6	16889576	16889776	+	997.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031198, intron 1 of 6)	intron (NM_031198, intron 1 of 6)	8765.0	NM_031198	21426.0	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-8684546-2	chr11	8684446	8684646	+	560.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20011.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35827994-2	chr17	35827894	35828094	+	775.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008027, intron 8 of 12)	B4A|SINE|B4	4637.0	NM_008027	14251.0	Mm.2931	NM_008027	ENSMUSG00000059714	Flot1	reggie-2	flotillin 1	protein-coding	-0.746773455771235	-1.08932815744113	-1.10013667803249	-1.10732590779976	-0.968095086054682	-0.916918533353973	-1.09768986588663	-1.10700865210615	-0.321306171528351	0.916374504868405	1
Merged-chr2-160176812-2	chr2	160176712	160176912	+	699.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	150682.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-75289607-3	chr10	75289507	75289707	+	835.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153406, intron 13 of 15)	intron (NM_153406, intron 13 of 15)	-27270.0	NM_009630	11540.0	Mm.333734	NM_009630	ENSMUSG00000020178	Adora2a	A2AAR|A2aR|AA2AR	adenosine A2a receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91376839-3	chr16	91376740	91376940	+	994.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347258, intron 1 of 7)	intron (NM_001347258, intron 1 of 7)	4057.0	NM_001110498	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-75315948-2	chr8	75315848	75316048	+	784.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	102004.0	NM_029182	75141.0	Mm.179267	NM_029182	ENSMUSG00000034472	Rasd2	4930526B11Rik|AU045414|Rhes|TEM-2|TEM2	RASD family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5800569-4	chr17	5800482	5800682	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045080, intron 1 of 1)	intron (NR_045080, intron 1 of 1)	1092.0	NR_045080	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-47395194-2	chr14	47395094	47395294	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144553, intron 14 of 18)	intron (NM_144553, intron 14 of 18)	21334.0	NM_001145953	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64804185-4	chr5	64804095	64804295	+	984.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008453, intron 1 of 5)	CpG	672.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-152165434-8	chr4	152165349	152165549	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6582.0	NM_008236	15206.0	Mm.57038	NM_008236	ENSMUSG00000028940	Hes2	HES-2	hes family bHLH transcription factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-44474416-4	chr10	44474312	44474512	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15664.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-19701051-2	chr13	19700951	19701151	+	685.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3291.0	NM_181591	73412.0	Mm.279939	NM_181591	ENSMUSG00000041138	Nme8	1700056P15Rik|Sptrx-2|Txndc3	NME/NM23 family member 8	protein-coding	2.48762785823653	1.031539897133	1.90126137638589	0.988435935951144	1.85948903085042	1.03682250372023	2.23465859928943	1.58526062505272	-0.0727918787270087	0.95399092054049	0.998431161219273
Merged-chr9-57539649-2	chr9	57539549	57539749	+	918.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166364, intron 4 of 4)	intron (NM_001166364, intron 4 of 4)	2121.0	NM_001166364	78323.0	Mm.25814	NM_175273	ENSMUSG00000032305	Fam219b	2310046O06Rik|AI594866	family with sequence similarity 219, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-40659846-2	chr12	40659746	40659946	+	718.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 8 of 52)	intron (NM_172803, intron 8 of 52)	213793.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98769703-2	chr11	98769603	98769803	+	677.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001313983)	TTS (NM_001313983)	5674.0	NM_145434	217166.0	Mm.390397	NM_145434	ENSMUSG00000020889	Nr1d1	A530070C09Rik|R75201	nuclear receptor subfamily 1, group D, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-63093607-4	chr11	63093530	63093730	+	955.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027660, intron 7 of 7)	intron (NM_027660, intron 7 of 7)	31971.0	NM_027660	71062.0	Mm.23534	NM_027660	ENSMUSG00000042189	Tekt3	4933407G07Rik	tektin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-67604614-4	chr11	67604523	67604723	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109657, intron 2 of 13)	intron (NM_001109657, intron 2 of 13)	8068.0	NM_001277079	14457.0	Mm.40338	NM_008088	ENSMUSG00000033066	Gas7	AW124766|B230343A10Rik|Gas7-cb	growth arrest specific 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129419163-2	chr4	129419063	129419263	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21655.0	NM_153541	215627.0	Mm.428660	NM_153541	ENSMUSG00000048485	Zbtb8b	AV220464|BC023839|BOZF1|Zbtb8	zinc finger and BTB domain containing 8b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-13404946-2	chr15	13404846	13405046	+	550.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-231271.0	NM_007666	12563.0	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-79767054-4	chr10	79766945	79767145	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027505)	promoter-TSS (NR_027505)	-93.0	NR_027505	70294.0	Mm.466670	NM_144528	ENSMUSG00000035890	Rnf126	2610010O19Rik	ring finger protein 126	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89157161-4	chr3	89157090	89157290	+	883.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008227, intron 1 of 7)	RSINE1|SINE|B4	2967.0	NM_008227	15168.0	Mm.389461	NM_008227	ENSMUSG00000028051	Hcn3	BCNG-4|Bcng4|Hac3|Hcn4	hyperpolarization-activated, cyclic nucleotide-gated K+ 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-51842581-2	chr13	51842481	51842681	+	615.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4094.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-22139877-3	chr8	22139793	22139993	+	758.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011848, intron 11 of 15)	intron (NM_011848, intron 11 of 15)	-14826.0	NM_001347318	330721.0	Mm.113940	NM_177898	ENSMUSG00000037738	Nek5	6530411J22|BB049667	NIMA (never in mitosis gene a)-related expressed kinase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-117851935-2	chr6	117851835	117852035	+	588.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-10089.0	NM_001360938	22685.0	Mm.249661	NM_008616	ENSMUSG00000042097	Zfp239	Mok-2|Mok2|Znf239	zinc finger protein 239	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-182381432-2	chr1	182381332	182381532	+	742.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27735.0	NM_173378	209456.0	Mm.287450	NM_173378	ENSMUSG00000026510	Trp53bp2	53BP2|AI746547|ASPP2|PPP1R13A|Tp53bp2|X98550	transformation related protein 53 binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-62917776-2	chr12	62917676	62917876	+	611.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17B|LTR|ERVK	229989.0	NR_131949	73309.0	Mm.276558	NR_131949		Spanxn4	1700047L15Rik	SPANX family, member N4	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-75613303-4	chr2	75613203	75613403	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45956.0	NM_146130	229279.0	Mm.316306	NM_053263	ENSMUSG00000059005	Hnrnpa3	2410013L13Rik|2610209F03Rik|2610510D13Rik|Hnrpa3	heterogeneous nuclear ribonucleoprotein A3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127548359-2	chr10	127548259	127548459	+	930.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_008512, exon 70 of 89)	exon (NM_008512, exon 70 of 89)	-13800.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	-0.973420454409262	-1.32062347626183	-1.33050850609429	-1.33862836391711	-1.34999588871066	-1.31848134906075	-1.3282707520139	-1.18163826627392	-0.987604359287374	0.774485391035196	1
Merged-chr2-29661915-4	chr2	29661830	29662030	+	996.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054050, intron 1 of 23)	intron (NM_054050, intron 1 of 23)	42210.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128724250-1	chr2	128724150	128724350	+	608.0	f0_balb.idr	intron (NM_008587, intron 1 of 18)	intron (NM_008587, intron 1 of 18)	25335.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	-0.764648945392083	-0.754086259354115	-0.757544880642854	-0.760214620353687	-0.482139607878127	-0.753306916925858	-0.0548312926197707	-0.759748144135135	3.28066214419949	0.252943705171362	1
Merged-chr3-19627252-4	chr3	19627158	19627358	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17202.0	NM_001081281	381485.0	Mm.35419	NM_001081281	ENSMUSG00000060913	Trim55	D830041C10Rik|Murf2|Rnf29	tripartite motif-containing 55	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-107923625-4	chr4	107923501	107923701	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009949)	promoter-TSS (NM_009949)	-12.0	NM_009949	12896.0	Mm.307620	NM_009949	ENSMUSG00000028607	Cpt2	AI323697|CPTII	carnitine palmitoyltransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-86837782-2	chr12	86837682	86837882	+	696.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	47032.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-28590796-2	chr2	28590696	28590896	+	701.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7517.0	NM_001290484	70239.0	Mm.274120	NM_148928	ENSMUSG00000026816	Gtf3c5	2700084A09Rik|TFIIIC63|TFiiiC2-63	general transcription factor IIIC, polypeptide 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101583190-6	chr11	101582991	101583191	+	976.861084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359325, intron 1 of 7)	MT2B|LTR|ERVL	792.0	NM_001359325	217203.0	Mm.280559	NM_144830	ENSMUSG00000034947	Tmem106a	0610008L10Rik|AI043106|BC022145	transmembrane protein 106A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-10962244-4	chr16	10962140	10962340	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019980, intron 3 of 3)	intron (NM_019980, intron 3 of 3)	30881.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-14698113-4	chr9	14698047	14698247	+	858.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	35125.0	NR_152172	665374.0	Mm.387249	NR_152172	ENSMUSG00000111085	Gm7607	EG665374	predicted gene 7607	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-119818894-2	chr13	119818794	119818994	+	873.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11323.0	NM_001001449	380878.0	Mm.327311	NM_001001449	ENSMUSG00000094237	AF067063	-	cDNA sequence AF067063	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131366070-4	chr1	131365965	131366165	+	870.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081011, intron 4 of 22)	ORR1E|LTR|ERVL-MaLR	-86502.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	1.45924686829192	1.40924479512941	1.03717215184698	1.17641304526367	1.64974895513094	1.78786108106956	0.831514562004954	0.819164235245826	0.307127593482929	0.820032172892221	0.998431161219273
Merged-chr11-96073298-1	chr11	96073198	96073398	+	658.0	f1_balb.idr	intron (NM_007506, intron 4 of 4)	intron (NM_007506, intron 4 of 4)	2333.0	NM_001161419	11951.0	Mm.258	NM_007506	ENSMUSG00000006057	Atp5g1	-	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C1 (subunit 9)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78810343-4	chr15	78810204	78810404	+	985.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1G|LTR|ERVL-MaLR	-7262.0	NM_130859	105844.0	Mm.17629	NM_130859	ENSMUSG00000033170	Card10	AI449026|Bimp1|Carma3	caspase recruitment domain family, member 10	protein-coding	3.66294314232651	3.01766360864486	1.58841669032269	3.29517480356317	3.07101254283761	2.61155891842706	2.8100152730962	4.28116186594045	0.462673932092149	0.541913857806343	0.954866069207078
Merged-chr11-20213920-2	chr11	20213820	20214020	+	847.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008996, intron 1 of 5)	MLTR14|LTR|ERV1	12508.0	NM_008996	19324.0	Mm.271944	NM_008996	ENSMUSG00000020149	Rab1a	Gtbp|Rab-1|Rab1|Ypt1|mKIAA3012	RAB1A, member RAS oncogene family	protein-coding	-0.840765188318848	-0.828820091557137	-0.833647072137853	-0.836319491836079	-0.840103136375236	-0.825874151001496	-0.640423694632345	-0.0745584918573654	3.25267216038727	0.264297595094015	1
Merged-chr12-3859965-2	chr12	3859865	3860065	+	695.666687	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045884, exon 4 of 4)	non-coding (NR_045884, exon 4 of 4)	2279.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85129811-3	chr12	85129705	85129905	+	583.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_030225, exon 12 of 15)	exon (NM_030225, exon 12 of 15)	18972.0	NM_030225	78920.0	Mm.296221	NM_030225	ENSMUSG00000004789	Dlst	1600017E01Rik|4632413C10Rik|4930529O08Rik|DLTS	dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-84622975-4	chr2	84622907	84623107	+	980.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355067, intron 1 of 15)	intron (NM_001355067, intron 1 of 15)	26473.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-126609817-4	chr4	126609731	126609931	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145950)	promoter-TSS (NM_001145950)	-23.0	NM_001013755	230757.0	Mm.296838	NM_001013755	ENSMUSG00000073755	5730409E04Rik	7530403E16Rik|AI849033	RIKEN cDNA 5730409E04Rik gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-121981023-4	chr7	121980930	121981130	+	838.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033318, intron 1 of 16)	intron (NM_001033318, intron 1 of 16)	663.0	NM_001033318	233824.0	Mm.442015	NM_001033318	ENSMUSG00000034951	Cog7	5630400E24Rik|Gm167	component of oligomeric golgi complex 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-87839628-4	chr10	87839525	87839725	+	968.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18640.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-70040474-4	chr10	70040367	70040567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56654.0	NM_001111121	76551.0	Mm.281741	NM_001111121	ENSMUSG00000048701	Ccdc6	2810012H18Rik|AA536681|AA960498|AW061011	coiled-coil domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-119755873-4	chr13	119755646	119755846	+	712.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_175538, exon 1 of 4)	5' UTR (NM_175538, exon 1 of 4)	136.0	NM_175538	245269.0	Mm.403943	NM_175538	ENSMUSG00000095930	Nim1k	E130304F04Rik|Nim1	NIM1 serine/threonine protein kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-19011647-4	chr3	19011546	19011746	+	905.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	151449.0	NM_028840	74252.0	Mm.200383	NM_028840	ENSMUSG00000027599	Armc1	2310016N05Rik|2900046P06Rik|3110009G21Rik|AA409258|AW048872|Arcp|C330014L16Rik	armadillo repeat containing 1	protein-coding	3.38939342213501	3.81099709656911	4.1486665570109	3.52009506497666	1.10661933880224	1.31038485288874	1.24963960485714	1.50943016223574	-6.11404259506889	1.13698627008596e-07	9.79059421183592e-06
Merged-chr11-83531371-2	chr11	83531271	83531471	+	760.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013653)	promoter-TSS (NM_013653)	-853.0	NM_013653	20304.0	Mm.284248	NM_013653	ENSMUSG00000035042	Ccl5	MuRantes|RANTES|SISd|Scya5|TCP228	chemokine (C-C motif) ligand 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-73084523-3	chr11	73084420	73084620	+	957.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_025818)	TTS (NM_025818)	-6063.0	NM_001361245	16407.0	Mm.96	NM_008399	ENSMUSG00000005947	Itgae	A530055J10|CD103|aM290|alpha-E1|alpha-M290	integrin alpha E, epithelial-associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-24493875-4	chr10	24493766	24493966	+	940.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-101576.0	NM_010217	14219.0	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-22006680-2	chr9	22006580	22006780	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001293650, intron 6 of 17)	intron (NM_001293650, intron 6 of 17)	3692.0	NM_001293650	19089.0	Mm.214593	NM_008925	ENSMUSG00000003402	Prkcsh	80K-H|PKCSH	protein kinase C substrate 80K-H	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-86750838-2	chr11	86750738	86750938	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001003908, intron 1 of 31)	B1_Mus1|SINE|Alu	6729.0	NM_001003908	67300.0	Mm.254588	NM_001003908	ENSMUSG00000047126	Cltc	3110065L21Rik|CHC|R74732	clathrin, heavy polypeptide (Hc)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-8820548-2	chr19	8820448	8820648	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081196, exon 1 of 14)	exon (NM_001081196, exon 1 of 14)	1147.0	NM_001081196	68693.0	Mm.476519	NM_001081196	ENSMUSG00000071659	Hnrnpul2	1110031M08Rik|AI465155|Hnrpul2	heterogeneous nuclear ribonucleoprotein U-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-84955631-4	chr16	84955521	84955721	+	959.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198825, intron 15 of 15)	intron (NM_001198825, intron 15 of 15)	-16590.0	NR_045889	100038614.0	Mm.441351	NR_045889	ENSMUSG00000115518	Gm10791	-	predicted gene 10791	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-123332888-4	chr8	123332779	123332979	+	760.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172287, exon 1 of 15)	exon (NM_172287, exon 1 of 15)	166.0	NM_172287	234857.0	Mm.150200	NM_172287	ENSMUSG00000010154	Spire2	BC026502|Spir-2|Spir2	spire type actin nucleation factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-17870411-1	chr17	17870311	17870511	+	665.333313	f1_c57bl6.idr	Intergenic	ZP3AR|Satellite|Satellite	13528.0	NM_013521	14293.0	Mm.56951	NM_013521	ENSMUSG00000045551	Fpr1	FPR|LXA4R|fMLF-R	formyl peptide receptor 1	protein-coding	0.518395186532014	0.0587236664417239	0.0529370919506461	0.683422533825266	0.0421410623219542	0.060027012142227	0.637407260798806	0.0492483218238623	-0.898917463207277	0.684514830232218	1
Merged-chr10-42153032-3	chr10	42152931	42153131	+	961.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	123711.0	NM_019740	56484.0	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134220447-4	chr6	134220376	134220576	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 3 of 8)	intron (NM_001303102, intron 3 of 8)	-175853.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84209155-2	chr8	84208995	84209195	+	781.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_037294)	promoter-TSS (NR_037294)	-188.0	NR_037294	100526528.0		NR_037294	ENSMUSG00000105458	Mir3074-2	mir-3074-2|mmu-mir-3074-2	microRNA 3074-2	ncRNA	2.28158404557726	1.37903965523242	1.81308392909049	0.688387347241284	1.33743482161002	0.726769890228976	0.707787002666079	0.691063879207977	-2.78934119405132	0.063860150786685	0.376569834111393
Merged-chr2-8803429-2	chr2	8803329	8803529	+	718.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-386086.0	NR_038180	73438.0	Mm.23558	NR_038180	ENSMUSG00000085580	1700061F12Rik	-	RIKEN cDNA 1700061F12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-48044355-4	chr4	48044244	48044444	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015743)	promoter-TSS (NM_015743)	-961.0	NM_015743	18124.0	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-64850011-4	chr8	64849912	64850112	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178633)	promoter-TSS (NM_178633)	-88.0	NM_178633	77113.0	Mm.350347	NM_178633	ENSMUSG00000031605	Klhl2	6030411N21Rik|8530402H02Rik|ABP-KELCH|AU020744|Mav	kelch-like 2, Mayven	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-75894973-2	chr10	75894873	75895073	+	952.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358984, intron 4 of 5)	intron (NM_001358984, intron 4 of 5)	1575.0	NM_001358985	70377.0	Mm.275878	NM_024440	ENSMUSG00000009092	Derl3	1810006I20Rik|1810063P04Rik|IZP6|derlin-3	Der1-like domain family, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117067743-2	chr10	117067643	117067843	+	664.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-3891.0	NM_007636	12461.0	Mm.247788	NM_007636	ENSMUSG00000034024	Cct2	Cctb	chaperonin containing Tcp1, subunit 2 (beta)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-119237525-1	chr2	119237425	119237625	+	1000.0	f1_balb.idr	intron (NM_016907, intron 1 of 10)	CpG	165.0	NM_016907	20732.0	Mm.104955	NM_016907	ENSMUSG00000027315	Spint1	HAI-1	serine protease inhibitor, Kunitz type 1	protein-coding	-1.50537975133656	-1.47318037575974	-1.48291773270558	-1.33770320931865	-1.50311941470772	-1.47107024988922	-1.17428725192211	-1.48948455011659	0.879189138226032	0.800773123864259	1
Merged-chr5-105595367-3	chr5	105595277	105595477	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133897, intron 3 of 3)	intron (NM_133897, intron 3 of 3)	75906.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-9938320-3	chr19	9938234	9938434	+	939.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38801.0	NM_016692	16319.0	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171915881-5	chr1	171915836	171916036	+	910.966675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151536, intron 1 of 2)	RMER15-int|LTR|ERVL	-1526.0	NM_030710	30925.0	Mm.486404	NM_030710	ENSMUSG00000015314	Slamf6	KAL1|KAL1b|Ly108|NTB-A|NTBA|SF2000	SLAM family member 6	protein-coding	2.15312005423064	1.50282280628831	2.12009112397254	2.80761396122174	2.49366282886531	2.07575751228511	1.212555881988	1.42799186741393	-0.759429194795656	0.464975952476573	0.922521920152562
Merged-chr18-42468067-2	chr18	42467967	42468167	+	745.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43420.0	NM_001039474	56070.0	Mm.270511	NM_001039474	ENSMUSG00000024498	Tcerg1	2410022J09Rik|2900090C16Rik|AI428505|CA150b|FBP23|FBP28|Taf2s|ca150|p144	transcription elongation regulator 1 (CA150)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-20005812-4	chr3	20005697	20005897	+	957.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276250, intron 19 of 19)	intron (NM_001276250, intron 19 of 19)	29513.0	NM_001146324	12807.0	Mm.291533	NM_080634	ENSMUSG00000027615	Hps3	coa	HPS3, biogenesis of lysosomal organelles complex 2 subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-27186160-5	chr14	27186115	27186315	+	870.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289686, intron 2 of 12)	intron (NM_001289686, intron 2 of 12)	42222.0	NM_001289686	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-16980781-1	chr11	16980681	16980881	+	604.0	f0_balb.idr	intron (NM_019549, intron 9 of 9)	intron (NM_019549, intron 9 of 9)	27937.0	NM_019549	56193.0	Mm.98232	NM_019549	ENSMUSG00000020120	Plek	2010300B13Rik	pleckstrin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-80713011-4	chr18	80712939	80713139	+	983.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164109)	promoter-TSS (NM_001164109)	32.0	NM_001164109	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99093178-2	chr7	99093078	99093278	+	786.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 4 of 14)	ORR1E|LTR|ERVL-MaLR	47966.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91412510-4	chr2	91412389	91412589	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175123, intron 2 of 8)	intron (NM_175123, intron 2 of 8)	32225.0	NM_001311144	228356.0	Mm.386861	NM_175123	ENSMUSG00000040591	1110051M20Rik	AI586322	RIKEN cDNA 1110051M20 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-28039975-2	chr3	28039875	28040075	+	644.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_008875, intron 7 of 25)	intron (NM_008875, intron 7 of 25)	55804.0	NM_008875	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-75820130-4	chr13	75820030	75820230	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19755.0	NM_001360151	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	2.81894852657312	3.15898263748332	1.89434767592	2.96977027771276	2.75121587939185	3.35850916689214	2.9811803747508	3.22960654803514	0.547700424221731	0.426299738939042	0.902023751857747
Merged-chr10-34234206-3	chr10	34234089	34234289	+	875.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-26638.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-119246695-2	chr9	119246601	119246801	+	688.25	f0_balb.idr|f0_c57.idr	intron (NM_001359582, intron 14 of 18)	intron (NM_001359582, intron 14 of 18)	-15009.0	NR_033303	109280.0	Mm.261557	NM_175420	ENSMUSG00000092212	Slc22a13b-ps	9330176C04Rik|Slc22a13b	solute carrier family 22 (organic cation transporter), member 13b, pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-89089570-2	chr15	89089470	89089670	+	952.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_027905, exon 1 of 9)	exon (NM_027905, exon 1 of 9)	532.0	NM_027905	223776.0	Mm.44763	NM_027905	ENSMUSG00000035757	Selenoo	1300018J18Rik|Selo	selenoprotein O	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97984445-2	chr11	97984345	97984545	+	617.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163608, intron 1 of 13)	intron (NM_001163608, intron 1 of 13)	2001.0	NM_028199	72324.0	Mm.39617	NM_028199	ENSMUSG00000017417	Plxdc1	2410003I07Rik|AI848450|Tem7	plexin domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91811488-2	chr16	91811388	91811588	+	833.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110276, intron 8 of 15)	intron (NM_001110276, intron 8 of 15)	82117.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-38598832-3	chr5	38598719	38598919	+	840.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPLTR2_Mm|LTR|ERVK	-37224.0	NM_011715	22388.0	Mm.2654	NM_011715	ENSMUSG00000005103	Wdr1	Aip1|D5Wsu185e|rede	WD repeat domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127512054-4	chr10	127511913	127512113	+	775.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2926.0	NM_001098789	407790.0	Mm.336856	NM_001098789	ENSMUSG00000040280	Ndufa4l2	BC064011	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-101971281-2	chr12	101971181	101971381	+	558.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4693.0	NM_016856	51786.0	Mm.716	NM_016856	ENSMUSG00000041781	Cpsf2	100kDa|2610024B04Rik|AI662483|Cpsf|MCPSF|mKIAA1367	cleavage and polyadenylation specific factor 2	protein-coding	-0.607254232731933	-0.722806861860844	-0.441037047148368	-0.727032429722621	-0.603894563331966	-0.722263189525555	-0.434811287386356	-0.726713883661101	0.040978140506923	0.987563758974108	1
Merged-chr13-21721428-3	chr13	21721310	21721510	+	667.399963	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178200)	promoter-TSS (NM_178200)	-634.0	NM_178200	319186.0	Mm.277425	NM_178200	ENSMUSG00000114279	Hist1h2bm	H2b-291b	histone cluster 1, H2bm	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-107027208-2	chr8	107027108	107027308	+	640.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4118.0	NM_126165	116733.0	Mm.236004	NM_126165	ENSMUSG00000031913	Vps4a	4930589C15Rik|AI325971|AW553189	vacuolar protein sorting 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-55868085-2	chr16	55867985	55868185	+	657.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001134457, intron 2 of 5)	intron (NM_001134457, intron 2 of 5)	27194.0	NM_001134457	385658.0	Mm.310635	NM_001134457	ENSMUSG00000075033	Nxpe3	Fam55c|Gm1752|Gm611	neurexophilin and PC-esterase domain family, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44825053-4	chr7	44824962	44825162	+	892.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001171024, intron 1 of 8)	intron (NM_001171024, intron 1 of 8)	-8404.0	NR_033136	107503.0	Mm.389890	NM_030693	ENSMUSG00000038539	Atf5	AFTA|Atf7|Atfx|ODA-10	activating transcription factor 5	protein-coding	1.49987393480959	1.92846979746618	3.32841802386978	1.99041664237673	2.76921229623563	3.1143756754355	2.92540137194242	1.59211557939076	0.588338275004588	0.518092745102771	0.947641799425091
Merged-chr16-5473682-3	chr16	5473565	5473765	+	966.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-217709.0	NM_027446	70511.0	Mm.45780	NM_027446	ENSMUSG00000022544	Eef2kmt	5730409G15Rik|Fam86|Fam86a|eEF2-KMT	eukaryotic elongation factor 2 lysine methyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-84623982-4	chr2	84623880	84624080	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355067, intron 1 of 15)	intron (NM_001355067, intron 1 of 15)	25500.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	-0.42234962617236	-0.40788834946027	0.0711812337419462	-0.416260859997176	-0.421441941455805	-0.406826968598978	0.405720118912864	-0.415621874095563	1.04851999695988	0.694187898505913	1
Merged-chr14-61971284-4	chr14	61971170	61971370	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-288897.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-64854302-2	chr16	64854202	64854402	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357416, intron 2 of 2)	intron (NM_001357416, intron 2 of 2)	2301.0	NM_178647	106143.0	Mm.10160	NM_178647	ENSMUSG00000054604	Cggbp1	AA960172|AL023996|AW045841	CGG triplet repeat binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-61678723-2	chr10	61678623	61678823	+	566.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_126477, intron 1 of 1)	RLTR18B|LTR|ERVK	-1562.0	NM_001358488	20224.0	Mm.391794	NM_009120	ENSMUSG00000020088	Sar1a	1600019H17Rik|Sara|Sara1	secretion associated Ras related GTPase 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-99203637-4	chr5	99203523	99203723	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49304.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-61662537-2	chr8	61662437	61662637	+	833.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001293772, intron 10 of 21)	intron (NM_001293772, intron 10 of 21)	-71368.0	NM_001293774	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5802259-4	chr17	5802161	5802361	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045079, intron 2 of 2)	intron (NR_045079, intron 2 of 2)	2771.0	NR_045080	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-158865492-2	chr2	158865392	158865592	+	862.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	70685.0	NM_001291144	71715.0	Mm.315652	NM_145742	ENSMUSG00000027655	Dhx35	1200009D07Rik|Ddx35	DEAH (Asp-Glu-Ala-His) box polypeptide 35	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-49749815-2	chr2	49749715	49749915	+	740.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008449, intron 22 of 25)	intron (NM_008449, intron 22 of 25)	-37871.0	NM_027990	71897.0	Mm.41381	NM_027990	ENSMUSG00000026765	Lypd6b	2310010M24Rik|AW049525	LY6/PLAUR domain containing 6B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-17183407-3	chr11	17183300	17183500	+	848.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024459, intron 2 of 5)	ORR1C1|LTR|ERVL-MaLR	24102.0	NM_024459	19058.0	Mm.41840	NM_024459	ENSMUSG00000033953	Ppp3r1	CaNB1|Cnb1|MCIP1	protein phosphatase 3, regulatory subunit B, alpha isoform (calcineurin B, type I)	protein-coding	-0.413270832553205	0.248879758316469	-0.403519686790488	-0.4071766335812	-0.41236239857827	0.260274020124072	-0.402476173372258	-0.406537021983025	0.0394809277679939	0.98817139586833	1
Merged-chr10-44271873-4	chr10	44271772	44271972	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358596, intron 1 of 6)	L2|LINE|L2	3533.0	NM_001358596	11793.0	Mm.22264	NM_053069	ENSMUSG00000038160	Atg5	2010107M05Rik|3110067M24Rik|AW319544|Apg5l|Atg5l|C88337|Paddy	autophagy related 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-78428139-1	chr10	78428039	78428239	+	543.0	f1_c57bl6.idr	TTS (NM_007793)	TTS (NM_007793)	2469.0	NM_007793	13014.0	Mm.6095	NM_007793	ENSMUSG00000005054	Cstb	AA960480|Stfb	cystatin B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-76929344-4	chr5	76929248	76929448	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172146, intron 1 of 10)	intron (NM_172146, intron 1 of 10)	-21954.0	NM_001356974	67054.0	Mm.182931	NM_025939	ENSMUSG00000029247	Paics	2610511I09Rik|ADE2H1|AIRC|PAIS	phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-34793266-4	chr13	34793152	34793352	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53610.0	NM_138746	108161.0	Mm.41991	NM_138746	ENSMUSG00000038246	Fam50b	D0H6S2654E|X5L|XAP-5-like	family with sequence similarity 50, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-5303152-2	chr9	5303052	5303252	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_009807, exon 5 of 10)	exon (NM_009807, exon 5 of 10)	4635.0	NM_009807	12362.0	Mm.1051	NM_009807	ENSMUSG00000025888	Casp1	ICE|Il1bc	caspase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-65733164-2	chr17	65733064	65733264	+	609.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_133685, intron 1 of 6)	intron (NM_133685, intron 1 of 6)	39588.0	NM_133685	106572.0	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-101662097-4	chr14	101661999	101662199	+	868.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016723, intron 2 of 8)	CT-rich|Low_complexity|Low_complexity	8132.0	NM_016723	50933.0	Mm.275970	NM_016723	ENSMUSG00000022111	Uchl3	-	ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-57794657-2	chr14	57794557	57794757	+	684.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB-int|LTR|ERVL-MaLR	-3532.0	NM_009119	20220.0	Mm.30173	NM_009119	ENSMUSG00000021963	Sap18	C530046K05Rik|D11Ertd539e|EMegR4|Sap18a|Sinbp1	Sin3-associated polypeptide 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-44333402-2	chr19	44333302	44333502	+	667.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183216)	promoter-TSS (NM_183216)	76.0	NM_183216	329065.0	Mm.313583	NM_183216	ENSMUSG00000050195	Scd4	ACOD4	stearoyl-coenzyme A desaturase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-136579524-2	chr1	136579414	136579614	+	850.5	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-45387.0	NM_177643	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-119331524-4	chr4	119331387	119331587	+	750.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001270435, exon 12 of 15)	exon (NM_001270435, exon 12 of 15)	-10964.0	NM_001110130	66101.0	Mm.304080	NM_028677	ENSMUSG00000060288	Ppih	1100001J08Rik|2010111B15Rik|4833408F11Rik|AI464484|CYP-20|CYPH|D4Wsu43e	peptidyl prolyl isomerase H	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-78534504-2	chr11	78534404	78534604	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159392, intron 1 of 6)	B3|SINE|B2	1756.0	NM_001159392	21927.0	Mm.386774	NM_009395	ENSMUSG00000017615	Tnfaip1	Bacurd2|Edp-1|Edp1|Tnfip1	tumor necrosis factor, alpha-induced protein 1 (endothelial)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-46987470-2	chr7	46987370	46987570	+	716.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_033461, intron 4 of 4)	intron (NR_033461, intron 4 of 4)	10838.0	NR_033461	629141.0	Mm.229259	NR_033461	ENSMUSG00000056509	Gm9999	-	predicted gene 9999	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-59036836-7	chr4	59036757	59036957	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025277, intron 1 of 2)	intron (NM_025277, intron 1 of 2)	1701.0	NM_025277	14700.0	Mm.41780	NM_025277	ENSMUSG00000038607	Gng10	AV006524	guanine nucleotide binding protein (G protein), gamma 10	protein-coding	2.15659936350453	2.00285099740151	2.73303432411763	2.38490214691367	3.06879649548198	2.01798568059779	1.28686893642689	1.50744023488701	-0.308436291410134	0.754619151658304	0.998431161219273
Merged-chr2-159646806-4	chr2	159646701	159646901	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-300540.0	NR_040498	71081.0	Mm.383491	NR_040498	ENSMUSG00000085198	4933416E03Rik	-	RIKEN cDNA 4933416E03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-15064993-2	chr18	15064893	15065093	+	575.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_134112, intron 1 of 4)	intron (NM_134112, intron 1 of 4)	-1411.0	NM_001142731	106931.0	Mm.329299	NM_134112	ENSMUSG00000036225	Kctd1	4933402K10Rik|AI661543|AW553000	potassium channel tetramerisation domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-7217220-4	chr15	7217109	7217309	+	983.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289496, intron 20 of 22)	intron (NM_001289496, intron 20 of 22)	76667.0	NM_013584	16880.0	Mm.149720	NM_013584	ENSMUSG00000054263	Lifr	A230075M04Rik|AW061234|LIF	leukemia inhibitory factor receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-54611125-7	chr13	54611065	54611265	+	994.5238039999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001347512, exon 1 of 6)	exon (NM_001347512, exon 1 of 6)	208.0	NM_028870	74325.0	Mm.290026	NM_028870	ENSMUSG00000047547	Cltb	2310046E19Rik|lcb	clathrin, light polypeptide (Lcb)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-18210898-4	chr16	18210803	18211003	+	746.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_027843, exon 3 of 3)	non-coding (NR_027843, exon 3 of 3)	2630.0	NR_027843	66779.0	Mm.387525	NR_015575		4933432I09Rik	-	RIKEN cDNA 4933432I09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127667793-4	chr10	127667706	127667906	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045171, intron 1 of 1)	intron (NR_045171, intron 1 of 1)	683.0	NR_045171	72243.0	Mm.482902	NR_045171	ENSMUSG00000040195	1700012D01Rik	-	RIKEN cDNA 1700012D01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-89733097-2	chr10	89732997	89733197	+	925.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359468)	promoter-TSS (NM_001359468)	-802.0	NM_025914	67019.0	Mm.335292	NM_025914	ENSMUSG00000019948	Actr6	2010200J04Rik|AU044443|Arp6|ArpX|CDA12	ARP6 actin-related protein 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111758860-4	chr12	111758747	111758947	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001025358)	promoter-TSS (NM_001025358)	-2.0	NM_001361612	16593.0	Mm.278357	NM_008450	ENSMUSG00000021288	Klc1	AI874768|Kns2	kinesin light chain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10845640-4	chr19	10845543	10845743	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023044, intron 1 of 7)	intron (NM_023044, intron 1 of 7)	3099.0	NM_023044	65221.0	Mm.27387	NM_023044	ENSMUSG00000024737	Slc15a3	Ci1|cI-1	solute carrier family 15, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-63500158-3	chr9	63500040	63500240	+	860.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030068, intron 14 of 21)	intron (NM_030068, intron 14 of 21)	-100896.0	NM_027090	69478.0	Mm.113942	NM_027090	ENSMUSG00000032403	2300009A05Rik	-	RIKEN cDNA 2300009A05 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122477534-2	chr8	122477434	122477634	+	566.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_152823, intron 4 of 14)	intron (NR_152823, intron 4 of 14)	1391.0	NR_152823	66965.0	Mm.482288	NM_153775	ENSMUSG00000049482	Ctu2	2310061F22Rik|C16orf84|Ncs2	cytosolic thiouridylase subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-93642814-4	chr2	93642740	93642940	+	718.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007442, exon 1 of 4)	exon (NM_007442, exon 1 of 4)	406.0	NM_007442	11695.0	Mm.389389	NM_007442	ENSMUSG00000040310	Alx4	lst	aristaless-like homeobox 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126821484-2	chr8	126821384	126821584	+	821.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27536.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-85710398-4	chr15	85710294	85710494	+	785.858337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3075.0	NR_029727	387245.0		NR_029727	ENSMUSG00000065564	Mirlet7b	Mirnlet7b|let-7b|mmu-let-7b	microRNA let7b	ncRNA	-2.18243820993087	-2.15538464093652	-2.16356586349869	-2.17028616330028	-2.18053909940952	-2.15361173587851	-2.16171381403791	-2.0403552525549	0.759018020146679	0.829933115115583	1
Merged-chr14-32084954-4	chr14	32084853	32085053	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145460)	promoter-TSS (NM_145460)	333.0	NR_104305	105638.0	Mm.2519	NM_172254	ENSMUSG00000021905	Dph3	DELGIP1|DelgipP1|Desr1|KTI11|Zcsl2	diphthamine biosynthesis 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-20534053-4	chr10	20533958	20534158	+	900.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013875, intron 2 of 12)	UCON26|Unknown|Unknown	14270.0	NM_001347366	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-101239539-4	chr5	101239452	101239652	+	886.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	393323.0	NM_172715	231510.0	Mm.271911	NM_172715	ENSMUSG00000029314	Gpat3	1-AGPAT|1-AGPAT 9|4933407I02Rik|4933408F15|A230097K15Rik|Agpat9|GPAT-3|mGPAT3	glycerol-3-phosphate acyltransferase 3	protein-coding	0.805030325253321	0.549405969015018	1.24072994890021	0.533553599071789	1.03260982050637	0.551412041411748	1.25385690972583	0.859488524809539	0.639983687859557	0.692728585295536	1
Merged-chr8-83893914-2	chr8	83893870	83894070	+	849.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6128.0	NM_181039	330814.0	Mm.260733	NM_181039	ENSMUSG00000013033	Adgrl1	2900070I05Rik|AI182398|CLIBA|Lec2|Lphn1|mKIAA0821	adhesion G protein-coupled receptor L1	protein-coding	1.54071860784632	2.45316856539711	1.05193771416832	1.77105594402036	1.39994440203224	2.47293547230209	1.05766933001244	2.02121417184033	0.129300206685265	0.911545100390646	0.998431161219273
Merged-chr18-23845309-2	chr18	23845209	23845409	+	658.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162941, intron 3 of 7)	intron (NM_001162941, intron 3 of 7)	41339.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-97865481-2	chr15	97865381	97865581	+	824.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_009504, intron 7 of 9)	intron (NM_009504, intron 7 of 9)	-20979.0	NM_001204278	56233.0	Mm.384027	NM_019572	ENSMUSG00000022475	Hdac7	5830434K02Rik|HD7|HD7a|Hdac7a|mFLJ00062	histone deacetylase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-75992876-3	chr13	75992776	75992976	+	999.2777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029343, intron 3 of 4)	intron (NM_029343, intron 3 of 4)	25137.0	NM_029343	75571.0	Mm.443291	NM_029343	ENSMUSG00000021590	Spata9	1700030K01Rik|4930599C08Rik|A930023H06Rik	spermatogenesis associated 9	protein-coding	2.60304550738235	2.47209224757445	2.06359332616162	2.31208716321892	1.6547284389093	1.67672815354857	1.15910428639302	1.13433945689277	-2.76687177136238	0.00974184767712269	0.106970123639522
Merged-chr10-127537098-2	chr10	127536998	127537198	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2539.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-105005241-4	chr5	105005133	105005333	+	861.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22516.0	NM_030239	27405.0	Mm.389663	NM_030239	ENSMUSG00000029299	Abcg3	Abcp2|Mxr2	ATP binding cassette subfamily G member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-120981641-4	chr7	120981534	120981734	+	785.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028955)	promoter-TSS (NM_028955)	678.0	NM_007672	12585.0	Mm.1640	NM_007672	ENSMUSG00000030878	Cdr2	AA617262	cerebellar degeneration-related 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-136565627-2	chr5	136565527	136565727	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001291233, exon 1 of 24)	exon (NM_001291233, exon 1 of 24)	354.0	NM_001291239	13047.0	Mm.320317	NM_009986	ENSMUSG00000029705	Cux1	CDP|Cutl1|Cux|Cux-1	cut-like homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-121456810-2	chr14	121456710	121456910	+	753.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48444.0	NM_053079	56643.0	Mm.155618	NM_053079	ENSMUSG00000025557	Slc15a1	D630032F02|PECT1|PEPT1	solute carrier family 15 (oligopeptide transporter), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-45599846-3	chr14	45599771	45599971	+	922.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176845, intron 11 of 12)	intron (NM_176845, intron 11 of 12)	56161.0	NR_045809	67651.0	Mm.55930	NR_045809	ENSMUSG00000115324	4930527F14Rik	-	RIKEN cDNA 4930527F14 gene	ncRNA	2.82852718079684	1.21254185448925	1.43979606103912	2.61488332667911	2.16910522185228	2.0708313902147	1.18870420439909	2.18087793006082	-0.618209905701789	0.571383040772317	0.963119869194766
Merged-chr14-47568478-4	chr14	47568362	47568562	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172599)	promoter-TSS (NM_172599)	-28.0	NM_172599	100504663.0	Mm.287279	NM_172599	ENSMUSG00000037526	Atg14	4832427M01|Atg14L|D14Ertd114e|D14Ertd436e	autophagy related 14	protein-coding	6.08756038525998	6.27862670171157	5.82130682027024	5.40478635474975	6.03757893720555	6.33332334571138	5.42626768637313	5.48444855717182	-0.069584467304693	0.806881774836837	0.998431161219273
Merged-chr11-59229535-2	chr11	59229438	59229638	+	942.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA5|LINE|L1	-1271.0	NM_007476	11840.0	Mm.371546	NM_007476	ENSMUSG00000048076	Arf1	-	ADP-ribosylation factor 1	protein-coding	1.41354603725076	1.95348299630323	1.06827895140258	0.829824254509475	1.00226903374884	1.62688504468456	1.98301004226501	0.832176277591879	0.19531424278365	0.88409874262736	0.998431161219273
Merged-chr11-59548649-2	chr11	59548549	59548749	+	836.875	f1_balb.idr|f1_c57bl6.idr	exon (NM_145827, exon 4 of 10)	exon (NM_145827, exon 4 of 10)	5963.0	NR_153314	216799.0	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-34032776-2	chr11	34032676	34032876	+	857.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_155520, intron 4 of 4)	MLT1A0|LTR|ERVL-MaLR	-14152.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-57033726-2	chr17	57033626	57033826	+	681.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_175333, exon 6 of 7)	exon (NM_175333, exon 6 of 7)	-2219.0	NM_010613	16549.0	Mm.34296	NM_010613	ENSMUSG00000007670	Khsrp	6330409F21Rik|Fbp2|Fubp2|Ksrp	KH-type splicing regulatory protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-27908963-2	chr15	27908863	27909063	+	986.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081302, intron 3 of 56)	intron (NM_001081302, intron 3 of 56)	116885.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-49313283-4	chr2	49313175	49313375	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290656, intron 8 of 9)	intron (NM_001290656, intron 8 of 9)	67375.0	NM_001290656	109241.0	Mm.440436	NM_029924	ENSMUSG00000036792	Mbd5	9430004D19Rik|AA536666|AI426407|C030040A15Rik|Gm1630	methyl-CpG binding domain protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71528438-2	chr8	71528338	71528538	+	930.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	8999.0	NM_198095	69550.0	Mm.260325	NM_198095	ENSMUSG00000046718	Bst2	2310015I10Rik|Bst-2|C87040|CD317|DAMP-1|GREG	bone marrow stromal cell antigen 2	protein-coding	-0.388820409873725	-0.376074675951903	-0.380253627236398	-0.383475646946437	-0.241515913411753	0.248486413536939	0.0842660010080162	-0.382912901853622	3.61667370765479	0.139255975604955	1
Merged-chr10-20381621-2	chr10	20381521	20381721	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33802.0	NM_027930	71804.0	Mm.262151	NM_027930	ENSMUSG00000019992	Mtfr2	2610016C23Rik|4933412C16Rik|Dufd1|Fam54a	mitochondrial fission regulator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-143035553-3	chr2	143035464	143035664	+	991.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27505.0	NM_021335	20639.0	Mm.1323	NM_021335	ENSMUSG00000008333	Snrpb2	2810052G09Rik	U2 small nuclear ribonucleoprotein B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-23535228-4	chr17	23535120	23535320	+	623.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15579.0	NR_126485	320020.0	Mm.445111	NR_126484		6330415G19Rik	-	RIKEN cDNA 6330415G19 gene	ncRNA	3.83619764314277	1.4846487293706	2.94947087490631	3.50271077245142	1.80398736935006	2.59761093575922	2.87231755192418	2.10309821519938	-1.4221836329108	0.0884381888048324	0.458020743574264
Merged-chr5-92455762-2	chr5	92455662	92455862	+	609.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007644, intron 5 of 11)	MTA_Mm|LTR|ERVL-MaLR	-2795.0	NR_105843	102466159.0		NR_105843	ENSMUSG00000099160	Mir6415	Gm27714|mmu-mir-6415	microRNA 6415	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84238327-1	chr8	84238227	84238427	+	643.0	f1_balb.idr	Intergenic	B3|SINE|B2	-1285.0	NM_172503	212168.0	Mm.117094	NM_172503	ENSMUSG00000035671	Zswim4	D330002I24|E130119J17Rik	zinc finger SWIM-type containing 4	protein-coding	-0.162737969848636	-0.145938452768531	-0.151421869685171	-0.155665793536012	-0.161683745332842	0.506160601018013	0.561114861200708	0.0211178246372761	3.94971380878705	0.0815037375674189	1
Merged-chr1-105096281-2	chr1	105096181	105096381	+	562.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-259726.0	NR_151539	100504568.0	Mm.321153	NR_151538	ENSMUSG00000097482	Gm17634	-	predicted gene, 17634	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78586793-2	chr15	78586693	78586893	+	793.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5204.0	NR_155437	102640742.0	Mm.253544	NR_155437	ENSMUSG00000116097	Gm36738	-	predicted gene, 36738	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3937810-2	chr19	3937710	3937910	+	697.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019449, intron 3 of 10)	intron (NM_019449, intron 3 of 10)	2624.0	NM_001161428	54445.0	Mm.262094	NM_019449	ENSMUSG00000036908	Unc93b1	Unc-93B1|Unc93b	unc-93 homolog B1 (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-34930990-4	chr18	34930904	34931104	+	914.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144866, intron 2 of 10)	intron (NM_144866, intron 2 of 10)	999.0	NM_144866	225363.0	Mm.329353	NM_144866	ENSMUSG00000024360	Etf1	AI463371|D6Ertd109e|ERF|ERF1|SUP45L1|TB3-1	eukaryotic translation termination factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-22091304-4	chr3	22091204	22091404	+	943.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030732, intron 1 of 15)	intron (NM_030732, intron 1 of 15)	14652.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-38055459-2	chr19	38055359	38055559	+	787.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028760, intron 1 of 9)	intron (NM_028760, intron 1 of 9)	418.0	NM_001164362	74107.0	Mm.9916	NM_028293	ENSMUSG00000024989	Cep55	1200008O12Rik|2700032M20Rik	centrosomal protein 55	protein-coding	2.47790388388036	0.913675498716768	1.15719072157209	1.50779901005363	2.75250227329563	0.919637873777347	1.73378964479044	0.868461428969223	0.37930753805203	0.773345583402248	0.998431161219273
Merged-chr15-8447385-2	chr15	8447285	8447485	+	920.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2922.0	NM_201232	71175.0	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	NIPBL cohesin loading factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-67545345-3	chr11	67545219	67545419	+	918.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008088, intron 1 of 13)	intron (NM_008088, intron 1 of 13)	12321.0	NM_008088	14457.0	Mm.40338	NM_008088	ENSMUSG00000033066	Gas7	AW124766|B230343A10Rik|Gas7-cb	growth arrest specific 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-60261665-3	chr10	60261567	60261767	+	904.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15961.0	NM_001146123	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-21353822-4	chr16	21353706	21353906	+	903.587524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20450.0	NR_131983	76222.0	Mm.86031	NR_131983		Magef1	6430590I03Rik	melanoma antigen family F, 1	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80756889-2	chr10	80756789	80756989	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_199322, intron 1 of 27)	intron (NM_199322, intron 1 of 27)	1686.0	NM_199322	208266.0	Mm.152371	NM_199322	ENSMUSG00000061589	Dot1l	A630076O07|AW907654|Dot1|KMT4|mDot1	DOT1-like, histone H3 methyltransferase (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-25499663-4	chr5	25499527	25499727	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081383)	promoter-TSS (NM_001081383)	-170.0	NR_030700	320965.0	Mm.32025	NR_030700		4831440E17Rik	-	RIKEN cDNA 4831440E17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-49146847-2	chr7	49146747	49146947	+	833.833313	f1_balb.idr|f1_c57bl6.idr	intron (NR_154465, intron 3 of 3)	Lx7|LINE|L1	15311.0	NR_154465	108167511.0	Mm.400599	NR_154465		9130015G15Rik	-	RIKEN cDNA 9130015G15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180943947-2	chr1	180943847	180944047	+	892.4166869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_144794, intron 1 of 22)	intron (NM_144794, intron 1 of 22)	1429.0	NM_144794	208795.0	Mm.185518	NM_144794	ENSMUSG00000026519	Tmem63a	BC014795|Tmem64a	transmembrane protein 63a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-102153859-3	chr7	102153768	102153968	+	813.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_022979, exon 16 of 23)	exon (NM_022979, exon 16 of 23)	-37155.0	NM_001081424	504186.0	Mm.334074	NM_001081424	ENSMUSG00000066279	Chrna10	-	cholinergic receptor, nicotinic, alpha polypeptide 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-102792794-8	chr4	102792612	102792812	+	935.9739380000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144906, intron 1 of 23)	intron (NM_144906, intron 1 of 23)	32577.0	NM_001285859	73094.0	Mm.54201	NM_144906	ENSMUSG00000028524	Sgip1	3110007P09Rik|SGIP1alpha|gag	SH3-domain GRB2-like (endophilin) interacting protein 1	protein-coding	1.38425283067028	0.724632457152799	0.975159604631255	0.941809189326855	1.7420176068121	2.78281004131549	0.70576963802527	0.947724443443334	2.33561525251126	0.0775359324666293	0.423623004432886
Merged-chr12-112615861-2	chr12	112615761	112615961	+	786.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_198411)	TTS (NM_198411)	-4186.0	NM_007421	11565.0	Mm.3440	NM_007421	ENSMUSG00000011148	Adssl1	AI528595|Adss|Adss1	adenylosuccinate synthetase like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-90224307-3	chr11	90224174	90224374	+	952.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB2|LINE|L1	-25202.0	NM_026178	67468.0	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-7953333-1	chr8	7953233	7953433	+	715.0	f1_c57bl6.idr	Intergenic	Lx5b|LINE|L1	707440.0	NM_010111	13642.0	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	-0.794002032934915	-0.784306946641704	-0.787488001606573	-0.362323964975447	-0.793398165916683	-0.279083118794118	-0.78678678082321	-0.789511156486875	0.324833107572995	0.913965784115277	1
Merged-chr2-165880793-2	chr2	165880692	165880892	+	816.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252587, intron 1 of 11)	intron (NM_001252587, intron 1 of 11)	1486.0	NM_001281926	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	1.89449295478272	1.96820640249115	1.29903599115811	2.22720264364839	2.02622916672662	2.59663863315129	2.06544263070866	2.51633404716928	1.09682741443799	0.242669988736472	0.739974887714382
Merged-chr11-114967772-1	chr11	114967672	114967872	+	617.0	f1_c57bl6.idr	Intergenic	Intergenic	-7355.0	NM_199225	387565.0	Mm.351450	NM_199225	ENSMUSG00000058728	Cd300c	Clm6	CD300C molecule	protein-coding	4.57539136168532	4.04628345664336	4.0337917069615	3.06835720029522	3.29256365627064	1.77584920883594	2.45388635946637	4.44864997959306	-0.915349648438376	0.190171946447661	0.668954168251044
Merged-chr15-85089668-4	chr15	85089587	85089787	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_080470, exon 18 of 25)	exon (NM_080470, exon 18 of 25)	42270.0	NM_080470	140557.0	Mm.182737	NM_080470	ENSMUSG00000022432	Smc1b	SMC-1B|SMC1beta|Smc1l2	structural maintenance of chromosomes 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-77520583-2	chr10	77520483	77520683	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4770.0	NM_133998	108707.0	Mm.259547	NM_133998	ENSMUSG00000032977	Fam207a	1810008A18Rik|AI303072	family with sequence similarity 207, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44361247-2	chr9	44361100	44361300	+	975.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_027889, intron 1 of 15)	intron (NM_027889, intron 1 of 15)	470.0	NM_001357393	71732.0	Mm.295013	NM_027889	ENSMUSG00000032127	Vps11	1200011A11Rik	VPS11, CORVET/HOPS core subunit	protein-coding	0.515242861922326	1.37071313356657	0.539238205605809	1.25720693131024	0.517506050968105	1.38469907238591	0.541769059821786	1.03372326683917	-0.255540367075363	0.880554138653451	0.998431161219273
Merged-chr13-49290187-2	chr13	49290087	49290287	+	668.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_015759, intron 3 of 17)	intron (NM_015759, intron 3 of 17)	19021.0	NM_015759	30938.0	Mm.291089	NM_015759	ENSMUSG00000037946	Fgd3	5830461L01Rik|ZFYVE5	FYVE, RhoGEF and PH domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-32611068-4	chr5	32610947	32611147	+	793.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001205133)	promoter-TSS (NM_001205133)	-124.0	NM_001205133	22612.0	Mm.4558	NM_009535	ENSMUSG00000014932	Yes1	Yes|p61-Yes	YES proto-oncogene 1, Src family tyrosine kinase	protein-coding	1.45537958078363	1.26365594782986	1.5879130551072	1.32284937732009	1.26739470517534	1.27243655913597	1.23299932631204	0.867899140553445	-1.0437191778077	0.405735689176311	0.89095290927429
Merged-chr11-4976593-3	chr11	4976487	4976687	+	631.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001243043, intron 1 of 22)	MLT2F|LTR|ERVL	-10237.0	NM_001355659	11764.0	Mm.274816	NM_007454	ENSMUSG00000009090	Ap1b1	Adtb1|b2b1660Clo	adaptor protein complex AP-1, beta 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-88644458-2	chr4	88644358	88644558	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177347)	promoter-TSS (NM_177347)	1.0	NM_177347	230396.0	Mm.246592	NM_177347	ENSMUSG00000063376	Ifna13	-	interferon alpha 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-110781546-4	chr9	110781443	110781643	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-16642.0	NM_153099	235628.0	Mm.292285	NM_153099	ENSMUSG00000044664	Prss42	Tessp2	protease, serine 42	protein-coding	3.83238315899954	3.6115881166264	4.30290567050807	2.64597933604863	4.79628108081935	3.42820040073718	3.51422615331069	4.47861104537995	0.650964411086391	0.242227993222258	0.739349184581178
Merged-chr2-121452218-4	chr2	121452111	121452311	+	964.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_110986, exon 3 of 3)	non-coding (NR_110986, exon 3 of 3)	3013.0	NR_110986	378702.0	Mm.262252	NM_011354	ENSMUSG00000074884	Serf2	C80083|Msmac1l|m4F5rel	small EDRK-rich factor 2	protein-coding	1.93862896101902	1.89139661245787	3.02597420236925	2.27573574726932	1.68930305252055	1.2051103489369	1.1734254433674	2.47522738508737	-1.43833208482283	0.172344548962262	0.640342426440101
Merged-chr6-146724880-4	chr6	146724788	146724988	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346666)	promoter-TSS (NM_001346666)	-42.0	NM_001346666	232533.0	Mm.322121	NM_172734	ENSMUSG00000001630	Stk38l	4930473A22Rik|Ndr2|Ndr54	serine/threonine kinase 38 like	protein-coding	6.61838107320946	6.11409343163806	6.31548148915461	6.15804731757896	6.78667266131513	6.97514147104094	7.20211040434232	6.56061552130841	0.614742065353291	0.00343957705466567	0.0500839235587349
Merged-chr11-20331658-4	chr11	20331554	20331754	+	787.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018861, intron 1 of 7)	intron (NM_018861, intron 1 of 7)	1059.0	NM_018861	55963.0	Mm.6379	NM_018861	ENSMUSG00000020142	Slc1a4	ASCT-1|ASCT1|AW045657|SATT	solute carrier family 1 (glutamate/neutral amino acid transporter), member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-6564585-2	chr15	6564485	6564685	+	748.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15262.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-58911682-4	chr4	58911601	58911801	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355697, intron 1 of 49)	CpG	229.0	NM_001355697	230249.0	Mm.234801	NM_172381	ENSMUSG00000050812	AI314180	AW558785|BB181316|Ecpas|mKIAA0368	expressed sequence AI314180	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-83567734-2	chr7	83567627	83567827	+	582.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR10A|LTR|ERVK	-17204.0	NM_177695	233424.0	Mm.486619	NM_177695	ENSMUSG00000038540	Tmc3	9030203A06	transmembrane channel-like gene family 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-102901544-4	chr2	102901468	102901668	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177785)	promoter-TSS (NM_001177785)	97.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-31627496-4	chr15	31627415	31627615	+	875.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25399.0	NM_001356313	68073.0	Mm.119185	NM_026546	ENSMUSG00000039065	Fam173b	A930016P21Rik|AA987072	family with sequence similarity 173, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-75367322-4	chr18	75367219	75367419	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001042660)	promoter-TSS (NM_001042660)	-46.0	NM_001042660	17131.0	Mm.34407	NM_008543	ENSMUSG00000025880	Smad7	Madh7	SMAD family member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-86591538-2	chr9	86591435	86591635	+	630.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008615, intron 12 of 13)	B4A|SINE|B4	19482.0	NM_027100	69519.0	Mm.272517	NM_027100	ENSMUSG00000032417	Rwdd2a	1700030C20Rik|AI848608|Rwdd2	RWD domain containing 2A	protein-coding	0.0696335454023896	-0.0722978441549158	1.00428517111025	-0.0840242150801352	0.214759808273703	-0.0708181644187313	-0.0774355867805298	0.104399036261006	-1.91618816807473	0.362612391041889	1
Merged-chr8-105564027-3	chr8	105563926	105564126	+	853.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013477, intron 1 of 7)	intron (NM_013477, intron 1 of 7)	2038.0	NM_013477	11972.0	Mm.17708	NM_013477	ENSMUSG00000013160	Atp6v0d1	AI267038|Ac39|Atp6d|P39|VATX|Vma6	ATPase, H+ transporting, lysosomal V0 subunit D1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64205864-4	chr5	64205763	64205963	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019636, intron 2 of 19)	intron (NM_019636, intron 2 of 19)	-24494.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-139067436-2	chr1	139067336	139067536	+	646.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166501, intron 9 of 21)	intron (NM_001166501, intron 9 of 21)	89779.0	NR_108103	78229.0	Mm.437838	NR_108103	ENSMUSG00000104900	4930596I21Rik	-	RIKEN cDNA 4930596I21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122706154-2	chr5	122705903	122706103	+	655.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1541.0	NM_001310720	18438.0	Mm.290884	NM_011026	ENSMUSG00000029470	P2rx4	AI504491|AW555605|D5Ertd444e|P2X4	purinergic receptor P2X, ligand-gated ion channel 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-51499017-3	chr1	51498919	51499119	+	790.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20620.0	NM_001310549	109019.0	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-19319250-2	chr3	19319150	19319350	+	699.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB4|LINE|L1	-7928.0	NM_001122759	18583.0	Mm.355614	NM_008802	ENSMUSG00000069094	Pde7a	AU015378|AW047537	phosphodiesterase 7A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-75286747-2	chr18	75286632	75286832	+	666.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_027727, exon 17 of 17)	exon (NM_027727, exon 17 of 17)	10585.0	NR_045394	100503117.0	Mm.250517	NR_045393	ENSMUSG00000102047	2010010A06Rik	5033420E22Rik	RIKEN cDNA 2010010A06 gene	ncRNA	-0.893986561169655	-0.875744574464236	0.191235023404903	-0.88803707909448	-0.893095256885496	-0.872421296127899	-0.88349549973802	-0.887416687878218	-3.49744126941707	0.244297073838425	1
Merged-chr8-117074159-2	chr8	117074059	117074259	+	663.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029686, intron 4 of 42)	intron (NM_029686, intron 4 of 42)	8290.0	NM_029686	76645.0	Mm.159753	NM_029686	ENSMUSG00000034416	Pkd1l2	1700126L06Rik	polycystic kidney disease 1 like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-13484690-1	chr9	13484590	13484790	+	588.0	f0_balb.idr	Intergenic	Intergenic	53329.0	NR_028271	18689.0	Mm.41972	NM_008835	ENSMUSG00000031802	Phxr4	Sp5	per-hexamer repeat gene 4	ncRNA	-1.18222045008182	-0.978438292940914	-1.16770109385923	-1.17699121268927	-1.18171183814936	-0.648785584566264	-1.16514082719289	-1.17532828586041	1.59252109794841	0.622914666369258	1
Merged-chr12-85958655-2	chr12	85958555	85958755	+	624.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347395, intron 29 of 32)	intron (NM_001347395, intron 29 of 32)	120386.0	NM_009368	21809.0	Mm.3992	NM_009368	ENSMUSG00000021253	Tgfb3	TGF-beta-3|Tgfb-3	transforming growth factor, beta 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-32136535-4	chr5	32136457	32136657	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008037)	promoter-TSS (NM_008037)	85.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81561685-2	chr10	81561585	81561785	+	570.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001276288, intron 2 of 6)	intron (NM_001276288, intron 2 of 6)	2241.0	NM_001276288	14797.0	Mm.180013	NM_010347	ENSMUSG00000054452	Aes	AL024115|Esp1|Grg|Grg-5|Grg5|Tle5	amino-terminal enhancer of split	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-106534434-1	chr14	106534334	106534534	+	541.0	f1_c57bl6.idr	Intergenic	Lx2A1|LINE|L1	-47914.0	NR_045938	73631.0	Mm.48862	NR_045938	ENSMUSG00000099794	1700128A07Rik	-	RIKEN cDNA 1700128A07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-103504602-4	chr2	103504494	103504694	+	903.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19441.0	NM_009804	12359.0	Mm.4215	NM_009804	ENSMUSG00000027187	Cat	2210418N07|Cas-1|Cas1|Cs-1	catalase	protein-coding	3.15147626591834	2.33984295913496	2.06853151466423	3.31608656890833	2.80398452062184	2.81404083367093	3.61898779941576	2.36567950967763	0.269856796369066	0.715861788217362	0.998431161219273
Merged-chr18-46947570-3	chr18	46947482	46947682	+	681.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11294.0	NM_178377	69456.0	Mm.210734	NM_178377	ENSMUSG00000042705	Commd10	2310003A05Rik|AU019438|DRWMS2|Tg(Vav1-icre)A2Kio|Vav-cre|Vav-iCre|Vav1-Cre|VavCre	COMM domain containing 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98587259-4	chr11	98587159	98587359	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025661)	promoter-TSS (NM_025661)	-14.0	NM_025661	66612.0	Mm.180546	NM_025661	ENSMUSG00000038150	Ormdl3	2810011N17Rik|AI315223	ORM1-like 3 (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-113484121-2	chr6	113484021	113484221	+	837.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_134159)	TTS (NM_134159)	765.0	NR_145485	171508.0	Mm.41593	NM_133930	ENSMUSG00000030284	Creld1	AI843811|i11E7	cysteine-rich with EGF-like domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101418828-2	chr7	101418728	101418928	+	702.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2863.0	NM_001008548	207728.0	Mm.247564	NM_001008548	ENSMUSG00000030653	Pde2a	CGS-PDE|cGSPDE	phosphodiesterase 2A, cGMP-stimulated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89454954-2	chr3	89454854	89455054	+	636.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310640, intron 1 of 3)	intron (NM_001310640, intron 1 of 3)	413.0	NM_001310640	68603.0	Mm.34242	NM_026784	ENSMUSG00000027952	Pmvk	1110011E12Rik|2900002L22Rik|AV001327|PMK|PMKA|PMKASE	phosphomevalonate kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-55801775-2	chr4	55801675	55801875	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-269300.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-51492055-4	chr1	51492028	51492228	+	919.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13729.0	NM_001310549	109019.0	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43530581-5	chr4	43530351	43530551	+	746.65332	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6897.0	NM_001277875	22004.0	Mm.646	NM_009416	ENSMUSG00000028464	Tpm2	Tpm-2|Trop-2	tropomyosin 2, beta	protein-coding	-0.501157386154278	0.0108082165365684	-0.492967167247549	-0.496046184791902	0.159110840820481	-0.488076550678428	-0.492086946242894	-0.495508295564876	0.514377342850211	0.852866980006548	1
Merged-chr6-72149888-2	chr6	72149740	72149940	+	556.0	f0_balb.idr|f1_balb.idr	intron (NM_001035228, intron 6 of 6)	MER5B|DNA|hAT-Charlie	-26643.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-138311102-4	chr2	138311006	138311206	+	865.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32613.0	NM_145534	228662.0	Mm.153405	NM_145534	ENSMUSG00000062098	Btbd3	mKIAA0952	BTB (POZ) domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-89177783-4	chr15	89177667	89177867	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138749, intron 1 of 37)	intron (NM_138749, intron 1 of 37)	3021.0	NM_001284506	140570.0	Mm.267514	NM_138749	ENSMUSG00000036606	Plxnb2	Debt|plexin-B2	plexin B2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-101958851-2	chr5	101958751	101958951	+	767.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 6 of 66)	intron (NM_172882, intron 6 of 66)	111070.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-144299350-4	chr1	144299230	144299430	+	986.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER67B|LTR|ERV1	-50226.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-103029660-2	chr13	103029560	103029760	+	604.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175171, intron 3 of 28)	intron (NM_175171, intron 3 of 28)	269405.0	NR_130171	76624.0	Mm.426384	NR_130171	ENSMUSG00000091906	1700099I09Rik	-	RIKEN cDNA 1700099I09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-6456276-4	chr11	6456166	6456366	+	977.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-11823.0	NM_001347064	77605.0	Mm.27624	NM_029938	ENSMUSG00000041126	H2afv	C530002L11Rik|H2a.z-2|H2av|Tg(Wnt1-cre)11Rth|Wnt1-Cre|Wnt1::Cre|Wnt1cre	H2A histone family, member V	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-32623135-2	chr11	32623035	32623235	+	582.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001359177, exon 19 of 19)	3' UTR (NM_001359177, exon 19 of 19)	-19420.0	NM_001271348	103583.0	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-65776821-3	chr5	65776732	65776932	+	886.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024917, intron 3 of 19)	RMER4B|LTR|ERVK	13311.0	NM_001024917	333789.0	Mm.332398	NM_001024917	ENSMUSG00000037795	N4bp2	B3bp|E430014I16|Gm1791|Gm868	NEDD4 binding protein 2	protein-coding	0.6697141566839	0.736610599729122	1.35568771583849	2.19820710051596	0.674149317376207	2.15544593166803	0.720305710703073	1.46175115275491	0.00860706973789637	0.995430297497736	0.998491424894068
Merged-chr8-22706573-4	chr8	22706539	22706739	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010546)	promoter-TSS (NM_010546)	-56.0	NM_001159774	16150.0	Mm.277886	NM_010546	ENSMUSG00000031537	Ikbkb	AI132552|IKK-2|IKK-beta|IKK2|IKK[b]|IKKbeta	inhibitor of kappaB kinase beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-117481186-4	chr12	117481086	117481286	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35293.0	NM_175930	217944.0	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-194256079-2	chr1	194255979	194256179	+	652.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33320.0	NR_040477	74942.0	Mm.60689	NR_040477	ENSMUSG00000103692	4930503O07Rik	-	RIKEN cDNA 4930503O07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-75788697-2	chr14	75788597	75788797	+	926.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	-1660.0	NM_026232	67554.0	Mm.46067	NM_026232	ENSMUSG00000022003	Slc25a30	4933433D23Rik|AV025504|AV221431|AW319655|KMCP1	solute carrier family 25, member 30	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-20710903-2	chr16	20710803	20711003	+	642.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009900, intron 10 of 23)	intron (NM_009900, intron 10 of 23)	5733.0	NM_009900	12724.0	Mm.177761	NM_009900	ENSMUSG00000022843	Clcn2	AL118368|ClC-2|Clc2|nmf240	chloride channel, voltage-sensitive 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-98754470-3	chr10	98754370	98754570	+	809.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-160172.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-127582109-4	chr6	127582032	127582232	+	936.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033464, intron 1 of 6)	intron (NM_001033464, intron 1 of 6)	4157.0	NM_001033464	381812.0	Mm.296093	NM_001033464	ENSMUSG00000061414	Cracr2a	Efcab4b|Gm1073|Gm462	calcium release activated channel regulator 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88533550-2	chr3	88533450	88533650	+	779.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001029890, intron 1 of 1)	intron (NM_001029890, intron 1 of 1)	1155.0	NM_001029890	72640.0	Mm.275154	NM_001029890	ENSMUSG00000074480	Mex3a	2700083E18Rik|Gm411|Rkhd4	mex3 RNA binding family member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-91376502-1	chr4	91376402	91376602	+	775.0	f0_balb.idr	promoter-TSS (NM_001357188)	promoter-TSS (NM_001357188)	-6.0	NM_001347149	15569.0	Mm.318042	NM_010486	ENSMUSG00000008489	Elavl2	Hub|mel-N1	ELAV like RNA binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-74535077-2	chr13	74534977	74535177	+	686.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41127.0	NM_146231	235956.0		NM_146231	ENSMUSG00000069208	Zfp825	-	zinc finger protein 825	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-19818219-3	chr14	19818169	19818369	+	722.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026528, intron 3 of 7)	intron (NM_026528, intron 3 of 7)	5554.0	NM_026528	68045.0	Mm.21932	NM_026528	ENSMUSG00000021807	Rtraf	2700060E02Rik	RNA transcription, translation and transport factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-40606027-3	chr12	40605861	40606061	+	996.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	159908.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-44349510-3	chr16	44349383	44349583	+	942.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144550, intron 1 of 17)	intron (NM_144550, intron 1 of 17)	2082.0	NM_144550	212514.0	Mm.24035	NM_144550	ENSMUSG00000043065	Spice1	Ccdc52|D16Ertd480e	spindle and centriole associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-152568889-3	chr3	152568805	152569005	+	975.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355635, intron 6 of 8)	intron (NM_001355635, intron 6 of 8)	-98008.0	NR_040386	99542.0	Mm.394921	NR_040386	ENSMUSG00000097745	AI115009	-	expressed sequence AI115009	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-144006707-4	chr1	144006615	144006815	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2566.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-47050802-2	chr19	47050702	47050902	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_027654, exon 1 of 10)	exon (NM_027654, exon 1 of 10)	104.0	NM_001360632	71041.0	Mm.35413	NM_027654	ENSMUSG00000025050	Pcgf6	4933407A11Rik|AI604840|MBLR|Rnf134	polycomb group ring finger 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89218760-2	chr3	89218660	89218860	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_149740, intron 2 of 20)	intron (NR_149740, intron 2 of 20)	2172.0	NR_149740	21827.0	Mm.2114	NM_013691	ENSMUSG00000028047	Thbs3	TSP3|Thbs-3	thrombospondin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127299268-2	chr7	127299168	127299368	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253873, intron 2 of 30)	B1_Mus1|SINE|Alu	3008.0	NM_001253874	16408.0	Mm.1618	NM_008400	ENSMUSG00000030830	Itgal	(p180)|Cd11a|LFA-1|LFA-1A|Ly-15|Ly-21	integrin alpha L	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-53170824-4	chr19	53170732	53170932	+	911.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013758, intron 1 of 15)	intron (NM_013758, intron 1 of 15)	26835.0	NM_013758	27360.0	Mm.426080	NM_013758	ENSMUSG00000025026	Add3	AI463285|R75380	adducin 3 (gamma)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-78185982-2	chr10	78185882	78186082	+	877.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029546)	promoter-TSS (NM_029546)	-833.0	NM_029546	110816.0	Mm.103522	NM_029546	ENSMUSG00000032834	Pwp2	6530411D08Rik|Pwp2h|wdp103	PWP2 periodic tryptophan protein homolog (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-14959130-1	chr3	14959030	14959230	+	590.0	f0_balb.idr	Intergenic	Intergenic	-12071.0	NR_040549	77127.0	Mm.195792	NR_040549	ENSMUSG00000098008	A930001A20Rik	-	RIKEN cDNA A930001A20 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-78536299-4	chr11	78536207	78536407	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159392)	promoter-TSS (NM_001159392)	-47.0	NM_009395	21927.0	Mm.386774	NM_009395	ENSMUSG00000017615	Tnfaip1	Bacurd2|Edp-1|Edp1|Tnfip1	tumor necrosis factor, alpha-induced protein 1 (endothelial)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-110718742-3	chr7	110718632	110718832	+	896.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49474.0	NM_001276301	11717.0	Mm.3238	NM_009667	ENSMUSG00000005686	Ampd3	-	adenosine monophosphate deaminase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26450051-1	chr17	26449951	26450151	+	591.0	f1_balb.idr	Intergenic	Intergenic	35086.0	NM_001081656	240055.0	Mm.133211	NM_001081656	ENSMUSG00000034413	Neurl1b	C230078M08Rik|EG240055	neuralized E3 ubiquitin protein ligase 1B	protein-coding	-1.36015291771705	-1.32842431658676	-1.33874579108173	-1.34722415754512	-1.35969949349639	-1.32618761000664	-1.33640923549635	-0.791042329471244	2.42373733289067	0.484013421080845	1
Merged-chr16-84736889-2	chr16	84736789	84736989	+	626.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TCC)n|Simple_repeat|Simple_repeat	-1587.0	NM_017404	27393.0	Mm.103655	NM_017404	ENSMUSG00000022889	Mrpl39	C21orf8|MRP-L5|ORF22|Rpml5	mitochondrial ribosomal protein L39	protein-coding	-1.13146769101922	-1.10460487238646	-1.11735372523027	-1.12713099301154	-1.13082009585647	-0.300663969208598	-1.11446766439333	-1.12595147812057	3.06518455575839	0.353555291099784	1
Merged-chr4-31036-1	chr4	30936	31136	+	801.0	f1_c57bl6.idr	Intergenic	Intergenic	-3141047.0	NM_001167534	100312470.0	Mm.480297	NM_001167534	ENSMUSG00000115072	Vmn1r2	Gm11776	vomeronasal 1 receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-73518094-3	chr6	73517987	73518187	+	756.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47066.0	NR_108032	73408.0	Mm.233629	NR_108032	ENSMUSG00000107408	1700065L07Rik	-	RIKEN cDNA 1700065L07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24207306-2	chr17	24207196	24207396	+	677.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010947, intron 4 of 5)	intron (NM_010947, intron 4 of 5)	-1734.0	NM_001163850	224617.0	Mm.301585	NM_173186	ENSMUSG00000036473	Tbc1d24	9630033P11|C530046L02Rik|mKIAA1171	TBC1 domain family, member 24	protein-coding	-1.3681463318974	-1.33624156493372	-1.34650167276047	-0.80669348975676	-1.36769697821496	-1.33401815676661	-1.34417900924365	-1.3534210303531	-2.3580830592467	0.49586638340111	1
Merged-chr11-90252047-1	chr11	90251947	90252147	+	554.0	f1_balb.idr	intron (NM_026178, intron 1 of 6)	intron (NM_026178, intron 1 of 6)	2571.0	NM_026178	67468.0	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-21712403-1	chr4	21712303	21712503	+	664.0	f0_balb.idr	Intergenic	RMER21A|LTR|ERV1	-15298.0	NM_001290422	51813.0	Mm.278584	NM_016746	ENSMUSG00000028252	Ccnc	AI451004|AU020987|CG1C	cyclin C	protein-coding	0.997579213014355	0.493310637131827	0.483190866167296	0.475295490053482	1.48952345487368	0.495574870290127	0.859290123088241	1.18783464169212	2.176042794621	0.210626762780484	0.700027673085942
Merged-chr4-134548232-4	chr4	134548111	134548311	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029100, intron 2 of 11)	intron (NM_029100, intron 2 of 11)	3955.0	NM_029100	74777.0	Mm.29773	NM_029100	ENSMUSG00000050989	Selenon	1110019I12Rik|AI414492|SelN|Sepn1	selenoprotein N	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-40744399-3	chr19	40744312	40744512	+	889.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	84642.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-113132871-2	chr12	113132771	113132971	+	606.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346696, intron 16 of 19)	intron (NM_001346696, intron 16 of 19)	-7365.0	NM_024223	68337.0	Mm.133825	NM_024223	ENSMUSG00000006356	Crip2	0610010I23Rik|AW743261|C77570|CRP2|CRP4|Crp|ESP1|Hlp	cysteine rich protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-72957698-2	chr11	72957598	72957798	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J2|LTR|ERVL-MaLR	-3471.0	NM_016745	53313.0	Mm.6306	NM_016745	ENSMUSG00000020788	Atp2a3	SERCA3b|Serca3	ATPase, Ca++ transporting, ubiquitous	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-62854875-3	chr13	62854765	62854965	+	889.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007994, intron 2 of 6)	intron (NM_007994, intron 2 of 6)	3505.0	NM_007994	14120.0	Mm.391871	NM_007994	ENSMUSG00000021456	Fbp2	Fbp-1|Fbp1|Rae-30	fructose bisphosphatase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-27591518-4	chr7	27591395	27591595	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001110208)	promoter-TSS (NM_001110208)	-57.0	NM_001110208	11652.0	Mm.177194	NM_007434	ENSMUSG00000004056	Akt2	2410016A19Rik|AW554154|PKB|PKBbeta	thymoma viral proto-oncogene 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-34961679-1	chr2	34961579	34961779	+	551.0	f1_c57bl6.idr	promoter-TSS (NM_001326601)	promoter-TSS (NM_001326601)	93.0	NM_009421	22029.0	Mm.239514	NM_009421	ENSMUSG00000026875	Traf1	4732496E14Rik	TNF receptor-associated factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-98313150-1	chr3	98313050	98313250	+	566.0	f1_balb.idr	TTS (NM_016966)	TTS (NM_016966)	26819.0	NM_016966	236539.0	Mm.16898	NM_016966	ENSMUSG00000053398	Phgdh	3-PGDH|3PGDH|4930479N23|A10|PGAD|PGD|PGDH|SERA	3-phosphoglycerate dehydrogenase	protein-coding	-1.20406370813143	-1.56956373024278	-1.57884638916872	-1.58647144159385	-1.598104728449	-1.56755213932999	-1.57674499865798	-1.58510656085539	-1.70745470802464	0.626337835847419	1
Merged-chr11-106972484-2	chr11	106972324	106972524	+	687.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27101.0	NM_010655	16647.0	Mm.12508	NM_010655	ENSMUSG00000018362	Kpna2	2410044B12Rik|IPOA1|PTAC58|Rch1	karyopherin (importin) alpha 2	protein-coding	0.166348907777881	0.868555055462899	-0.117726878875717	-0.122616140641191	-0.129576518746264	0.286544251446225	-0.116334527318035	-0.121759874542902	-2.18237068595609	0.339371170747993	1
Merged-chr8-94093611-3	chr8	94093493	94093693	+	700.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026116, intron 1 of 16)	intron (NM_026116, intron 1 of 16)	5218.0	NM_026116	67378.0	Mm.292107	NM_026116	ENSMUSG00000031755	Bbs2	2410125H22Rik|AI447581	Bardet-Biedl syndrome 2 (human)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-87330947-4	chr3	87330761	87330961	+	987.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-27020.0	NM_009690	11801.0	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-10107497-4	chr13	10107404	10107604	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033269, intron 3 of 4)	MER105|DNA|DNA	253299.0	NM_033269	12671.0	Mm.342315	NM_033269	ENSMUSG00000046159	Chrm3	Chrm-3|M3|M3R	cholinergic receptor, muscarinic 3, cardiac	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-150837041-3	chr2	150836953	150837153	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151505, intron 10 of 12)	intron (NR_151505, intron 10 of 12)	5517.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-53735283-3	chr11	53735200	53735400	+	892.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14506.0	NM_010558	16191.0	Mm.4461	NM_010558	ENSMUSG00000036117	Il5	Il-5	interleukin 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30795132-4	chr7	30795025	30795225	+	830.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7220.0	NM_001033131	64661.0	Mm.268157	NM_001033131	ENSMUSG00000074199	Krtdap	Kdap|sk221	keratinocyte differentiation associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-105542788-2	chr14	105542688	105542888	+	827.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44000.0	NR_045921	74864.0	Mm.159344	NR_045921	ENSMUSG00000022116	4930449E01Rik	-	RIKEN cDNA 4930449E01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-114527190-3	chr9	114527063	114527263	+	809.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042503, intron 1 of 3)	intron (NM_001042503, intron 1 of 3)	-30619.0	NM_009916	12773.0	Mm.1337	NM_009916	ENSMUSG00000047898	Ccr4	C-C CKR-4|CHEMR1|Cmkbr4|LESTR|Sdf1r	chemokine (C-C motif) receptor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-73951770-2	chr17	73951670	73951870	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1574.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-23433413-4	chr5	23433329	23433529	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026984)	promoter-TSS (NM_026984)	924.0	NR_040469	269630.0	Mm.425231	NR_040469	ENSMUSG00000073147	5031425E22Rik	-	RIKEN cDNA 5031425E22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-24992368-2	chr19	24992291	24992491	+	693.833374	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-7138.0	NM_028785	76088.0	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	3.08065485066005	2.20415923608411	3.26629147202292	1.50785083584415	3.34051311955938	3.59355000849226	4.80760790717269	3.36100332871807	1.90662535341653	0.00708871231272871	0.0856211781826702
Merged-chr10-70197071-2	chr10	70196971	70197171	+	759.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER30|DNA|hAT-Charlie	-7593.0	NM_001304739	69563.0	Mm.64672	NM_001304739	ENSMUSG00000019933	Mrln	2310015B20Rik|Linc-RAM|Mln	myoregulin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-33008700-2	chr5	33008600	33008800	+	958.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10116.0	NM_011738	22629.0	Mm.332314	NM_011738	ENSMUSG00000018965	Ywhah	-	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide	protein-coding	0.687998681118247	0.147532009325072	0.143260936774615	0.605235442426648	0.135434334588597	0.148501240692144	0.144198920913384	0.611254378574054	-1.14354957582036	0.6027896124737	1
Merged-chr2-16135622-4	chr2	16135541	16135741	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310455, intron 33 of 38)	intron (NM_001310455, intron 33 of 38)	-220663.0	NM_026162	67448.0	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-20143907-4	chr11	20143801	20144001	+	848.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-30950.0	NM_146243	66713.0	Mm.259045	NM_146243	ENSMUSG00000020152	Actr2	4921510D23Rik|AA409782|Arp2|D6Ertd746e	ARP2 actin-related protein 2	protein-coding	3.12310991033701	2.37719689846941	2.95695640012546	3.59092261896149	3.07874542929247	2.19575206994249	3.40400705555692	2.40137187362704	-0.386042732081716	0.587384146574616	0.968054256950857
Merged-chr15-50840651-4	chr15	50840535	50840735	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310481, intron 2 of 5)	MIR|SINE|MIR	48414.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-108901451-4	chr8	108901326	108901526	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007496, intron 4 of 9)	intron (NM_007496, intron 4 of 9)	-35434.0	NR_037295	100526511.0		NR_037295	ENSMUSG00000093241	Mir3108	mir-3108|mmu-mir-3108	microRNA 3108	ncRNA	2.20002150340026	1.20114277126503	1.75035925550719	1.7037163518136	2.0586605540575	2.09663391393274	1.4137593713994	2.16494696724698	0.549981055543988	0.601409732737746	0.973338823574839
Merged-chr12-73318265-1	chr12	73318165	73318365	+	541.0	f0_balb.idr	intron (NM_001037717, intron 4 of 15)	MER102c|DNA|hAT-Charlie	31417.0	NM_001037717	625098.0	Mm.32075	NM_001037717	ENSMUSG00000044712	Slc38a6	AW322671|EG625098	solute carrier family 38, member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-95749837-4	chr11	95749725	95749925	+	942.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_201609, exon 1 of 5)	exon (NM_201609, exon 1 of 5)	758.0	NM_201609	268469.0	Mm.389038	NM_201609	ENSMUSG00000075595	Zfp652	9530033F24Rik|ZNF652	zinc finger protein 652	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116614699-2	chr11	116614599	116614799	+	852.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_172572, intron 1 of 18)	RMER1C|Other|Other	9553.0	NM_001167680	217344.0	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-95939941-2	chr10	95939841	95940041	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001001932)	promoter-TSS (NM_001001932)	-722.0	NM_001001932	216238.0	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-72205295-2	chr5	72205195	72205395	+	863.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_003966, intron 1 of 22)	intron (NR_003966, intron 1 of 22)	1952.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117773487-2	chr11	117773387	117773587	+	887.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_154387, exon 9 of 19)	non-coding (NR_154387, exon 9 of 19)	6161.0	NR_154387	217353.0	Mm.286963	NM_145439	ENSMUSG00000025572	Tmc6	D11Ertd204e|EVER1	transmembrane channel-like gene family 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-136810818-2	chr6	136810718	136810918	+	629.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_177688)	TTS (NM_177688)	2570.0	NM_177688	232440.0	Mm.154564	NM_177688	ENSMUSG00000060032	H2afj	E130307C13	H2A histone family, member J	protein-coding	0.223246546525377	-0.0144092668179151	-0.0191814286096412	-0.0228524671454853	0.514530409273289	0.173675159039908	-0.0181302627633914	0.490758516034387	2.33184287888188	0.285705472436788	1
Merged-chr2-11426505-2	chr2	11426405	11426605	+	996.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-28005.0	NR_040615	77543.0	Mm.490670	NR_040615	ENSMUSG00000102674	8030442B05Rik	-	RIKEN cDNA 8030442B05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167633785-1	chr2	167633685	167633885	+	556.0	f1_c57bl6.idr	Intergenic	Intergenic	-1780.0	NM_023230	66589.0	Mm.278783	NM_023230	ENSMUSG00000078923	Ube2v1	0610011J09Rik|AI256840|CROC-1|CROC1|D7Bwg1382e|UEV-1	ubiquitin-conjugating enzyme E2 variant 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-58014391-2	chr15	58014291	58014491	+	823.400024	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	19903.0	NM_029418	75758.0	Mm.455792	NM_029418	ENSMUSG00000101892	9130401M01Rik	AI849328	RIKEN cDNA 9130401M01 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-95713255-2	chr8	95713155	95713355	+	638.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_001195006, exon 15 of 15)	exon (NM_001195006, exon 15 of 15)	-2658.0	NM_001035123	66083.0	Mm.261321	NM_001035123	ENSMUSG00000031671	Setd6	0610039J04Rik|3110004G14Rik|AI413388|C76402	SET domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-62131253-2	chr15	62131153	62131353	+	548.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_132746, intron 2 of 6)	PB1D10|SINE|Alu	88198.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-56490846-4	chr18	56490762	56490962	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360917, intron 11 of 13)	intron (NM_001360917, intron 11 of 13)	-47277.0	NR_106160	102465790.0		NR_106160	ENSMUSG00000099196	Mir1258	Gm27371|mmu-mir-1258	microRNA 1258	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-92788420-1	chr16	92788320	92788520	+	637.0	f0_balb.idr	intron (NM_001111022, intron 2 of 6)	intron (NM_001111022, intron 2 of 6)	37654.0	NM_001111021	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-51220100-4	chr17	51219987	51220187	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-40735.0	NM_001285991	72238.0	Mm.120650	NM_028162	ENSMUSG00000023923	Tbc1d5	1600014N05Rik	TBC1 domain family, member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-66014146-4	chr5	66014042	66014242	+	720.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9857.0	NR_027961	231253.0	Mm.436542	NM_177679	ENSMUSG00000054598	9130230L23Rik	-	RIKEN cDNA 9130230L23 gene	ncRNA	1.0349673897937	0.544713683700597	0.534980874281897	0.527414860407494	1.38136375198309	1.21954607798461	0.537134542849368	1.11710438835126	2.17687020642232	0.205012882938438	0.692299163936211
Merged-chr19-4334836-2	chr19	4334736	4334936	+	559.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001984, intron 12 of 20)	intron (NM_001001984, intron 12 of 20)	-28614.0	NM_001290818	110355.0	Mm.254144	NM_130863	ENSMUSG00000024858	Grk2	Adrbk-1|Adrbk1|Bark-1|beta ARK|betaARK1	G protein-coupled receptor kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-72220009-2	chr2	72219909	72220109	+	603.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355478, intron 13 of 26)	B3|SINE|B2	-65628.0	NM_023057	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-120562411-3	chr2	120562301	120562501	+	867.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011743, intron 1 of 21)	B2_Mm1t|SINE|B2	1458.0	NM_011743	20402.0	Mm.485295	NM_011743	ENSMUSG00000027288	Zfp106	Cd-1|D2Dcr28|EyeLinc12|H3a|Sh3bp3|Znf106|sirm|zfp-106	zinc finger protein 106	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-98797026-3	chr10	98796946	98797146	+	732.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-117596.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-77938394-4	chr18	77938283	77938483	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001195633)	promoter-TSS (NM_001195633)	-84.0	NM_001195633	100502841.0	Mm.297782	NM_001195633	ENSMUSG00000039840	Epg5	4732475F16|5430411K18Rik|AI661957|AW456499|mKIAA1632	ectopic P-granules autophagy protein 5 homolog (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-75658042-2	chr2	75657953	75658153	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR23|LTR|ERV1	-1206.0	NM_146130	229279.0	Mm.316306	NM_053263	ENSMUSG00000059005	Hnrnpa3	2410013L13Rik|2610209F03Rik|2610510D13Rik|Hnrpa3	heterogeneous nuclear ribonucleoprotein A3	protein-coding	-1.26331444426203	-1.36355630584805	-1.52272189923659	-1.53053467210616	-1.54245435775007	-1.51114959732935	-1.52056877479163	-1.52913618949789	-1.90260483685633	0.584008459975193	1
Merged-chr14-73187033-2	chr14	73186933	73187133	+	977.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC1|LINE|L1	19818.0	NR_030459	751541.0		NR_030459	ENSMUSG00000076121	Mir687	Mirn687|mir-687|mmu-mir-687	microRNA 687	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-123149956-2	chr3	123149856	123150056	+	655.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_080451, intron 1 of 4)	intron (NM_080451, intron 1 of 4)	86193.0	NM_080451	118449.0	Mm.34359	NM_080451	ENSMUSG00000050315	Synpo2	1110069I04Rik|2310068J10Rik|9530006G20Rik|AI848603|Myo	synaptopodin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-114345278-2	chr6	114345178	114345378	+	643.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52658.0	NM_001317125	15465.0	Mm.333327	NM_008285	ENSMUSG00000053004	Hrh1	Bphs|H1R|HH1R|Hir	histamine receptor H1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-46465480-4	chr18	46465381	46465581	+	907.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045438, exon 1 of 1)	non-coding (NR_045438, exon 1 of 1)	335.0	NR_045438	72076.0	Mm.82766	NM_028086		Mospd4	2010013H21Rik	motile sperm domain containing 4	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-135487650-2	chr7	135487550	135487750	+	849.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41004.0	NM_178669	212070.0	Mm.39721	NM_178669	ENSMUSG00000050866	Clrn3	AI649392|Tmem12	clarin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-70436023-3	chr18	70435912	70436112	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-36442.0	NM_029019	170461.0	Mm.83623	NM_029019	ENSMUSG00000079608	Stard6	1700011K09Rik|4833424I06Rik|4933429L05Rik|AI644424	StAR-related lipid transfer (START) domain containing 6	protein-coding	3.33299187803098	2.92346352677442	2.8252225143045	3.10934565566353	2.81521945349574	2.54453421659051	3.29865783978112	1.82633159165948	-0.608277130990202	0.3947338770949	0.882837719236596
Merged-chr7-47077573-2	chr7	47077473	47077673	+	961.1666869999999	f1_balb.idr|f1_c57bl6.idr	TTS (NM_013643)	TTS (NM_013643)	5651.0	NR_106023	102465639.0		NR_106023	ENSMUSG00000098960	Mir7056	Gm27696|mmu-mir-7056	microRNA 7056	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-58725990-4	chr1	58725888	58726088	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355056, intron 1 of 8)	intron (NM_001355056, intron 1 of 8)	-4564.0	NM_001293805	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-147077557-4	chr5	147077523	147077723	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_181730, exon 1 of 3)	5' UTR (NM_181730, exon 1 of 3)	277.0	NM_009087	20018.0	Mm.317557	NM_009087	ENSMUSG00000029642	Polr1d	1110003G10Rik|AC19|RPA16|Rpo1-3	polymerase (RNA) I polypeptide D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101763078-2	chr7	101762978	101763178	+	771.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009191, intron 6 of 15)	intron (NM_009191, intron 6 of 15)	-55235.0	NM_008887	11859.0	Mm.5028	NM_008887	ENSMUSG00000007946	Phox2a	Arix|Phox2|Pmx2|Pmx2a|Px2a	paired-like homeobox 2a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-146805185-4	chr5	146805094	146805294	+	971.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10238.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	3.13181979939934	2.90762660196783	2.16136452554556	2.72472684825686	3.53358799882278	3.05314993205249	3.05928895719788	3.9919770123151	1.1680257642753	0.0699658196387646	0.397717895148088
Merged-chr8-119347669-3	chr8	119347575	119347775	+	870.305542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024219, intron 3 of 3)	intron (NM_024219, intron 3 of 3)	3137.0	NM_024219	68196.0	Mm.358714	NM_024219	ENSMUSG00000031839	Hsbp1	0610007A03Rik|AA408769|Hsp25	heat shock factor binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-8973439-1	chr3	8973339	8973539	+	690.0	f1_balb.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	-9293.0	NM_001025261	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	0.564074402850326	0.631724587911832	1.56343339459746	0.846485379285477	0.800793288342656	1.51131020878389	2.48671796130738	0.596594576946089	1.89996177130326	0.191695516381393	0.670022180678953
Merged-chr11-3172506-7	chr11	3172385	3172585	+	984.228577	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030207, intron 6 of 32)	B3|SINE|B2	20978.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-69686436-2	chr1	69686336	69686536	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011770)	promoter-TSS (NM_011770)	-476.0	NM_011770	22779.0	Mm.106343	NM_011770	ENSMUSG00000025997	Ikzf2	A730095J18Rik|Helios|Zfpn1a2|Znfn1a2	IKAROS family zinc finger 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-34019713-4	chr10	34019612	34019812	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025614)	promoter-TSS (NM_025614)	-96.0	NM_025614	66521.0	Mm.28528	NM_025614	ENSMUSG00000019782	Rwdd1	0710001K08Rik|2610002D06Rik|2700069A07Rik|IH1	RWD domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-132221741-4	chr2	132221669	132221869	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26019.0	NM_027478	70612.0	Mm.30116	NM_027478	ENSMUSG00000027341	Tmem230	5730494N06Rik|AA407821	transmembrane protein 230	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-145107057-3	chr3	145106955	145107155	+	669.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA7|LINE|L1	-7949.0	NM_178697	229933.0	Mm.331420	NM_178697	ENSMUSG00000036960	Clca2	4732440A06|AI586120|Clca5	chloride channel accessory 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-73757323-2	chr15	73757223	73757423	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001166389, exon 6 of 6)	3' UTR (NM_001166389, exon 6 of 6)	9297.0	NM_008975	19245.0	Mm.390807	NM_008975	ENSMUSG00000059895	Ptp4a3	AV088979|Prl-3|pPtp4a3	protein tyrosine phosphatase 4a3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-108443515-4	chr6	108443414	108443614	+	975.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 44 of 61)	intron (NM_010585, intron 44 of 61)	-46229.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-75038128-2	chr4	75038028	75038228	+	632.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3C|LINE|L1	240164.0	NM_025849	66928.0	Mm.24332	NM_025849	ENSMUSG00000028398	Dmac1	1700027K24Rik|3110001D03Rik|Tmem261	distal membrane arm assembly complex 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32586352-2	chr2	32586252	32586452	+	720.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001276425)	promoter-TSS (NM_001276425)	-726.0	NM_001276425	20448.0	Mm.27446	NM_011373	ENSMUSG00000079442	St6galnac4	SIAT7-D|ST6GalNAcIV|Siat7d	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-80094681-4	chr11	80094586	80094786	+	864.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001029856, exon 2 of 23)	exon (NM_001029856, exon 2 of 23)	5286.0	NM_001029856	237877.0	Mm.89551	NM_001029856	ENSMUSG00000017550	Atad5	C130052G03Rik|FRAG1|Gm17	ATPase family, AAA domain containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-65772661-4	chr17	65772592	65772792	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133685)	promoter-TSS (NM_133685)	60.0	NM_133685	106572.0	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	5.00160249572025	4.76579684901708	3.93702095087833	3.89677059940919	4.27814474364366	4.60435666988654	4.69746167864206	3.18586274027653	-0.246007525653632	0.604180833715267	0.973799253481432
Merged-chr8-82401279-4	chr8	82401187	82401387	+	994.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001254747, intron 1 of 7)	intron (NM_001254747, intron 1 of 7)	1299.0	NM_001254747	16168.0	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	4.59670201510339	4.19572842365001	3.87263425077738	3.89491240981932	4.04747665478195	3.52347439604238	3.05461615798432	2.95195541223655	-0.989803452042365	0.0536642683934632	0.339245659860255
Merged-chr11-87026077-2	chr11	87025977	87026177	+	688.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur3|SINE|Alu	-32315.0	NM_001005341	77864.0	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-6483910-2	chr15	6483810	6484010	+	891.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_013485, intron 6 of 10)	RMER2|LTR|ERV1	38577.0	NM_013485	12279.0	Mm.29095	NM_013485	ENSMUSG00000022149	C9	-	complement component 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-20884370-2	chr5	20884270	20884470	+	813.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177601, intron 1 of 1)	RSINE1|SINE|B4	1917.0	NM_177601	212090.0	Mm.347525	NM_177601	ENSMUSG00000045435	Tmem60	BC027828	transmembrane protein 60	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81375220-2	chr10	81375120	81375320	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019757, intron 1 of 13)	intron (NM_019757, intron 1 of 13)	3150.0	NM_019757	56371.0	Mm.24202	NM_019757	ENSMUSG00000020235	Fzr1	AW108046|Cdh1|FZR|FZR2|Fyr|HCDH|HCDH1	fizzy and cell division cycle 20 related 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-72558210-2	chr5	72558110	72558310	+	678.833374	f1_balb.idr|f1_c57bl6.idr	intron (NR_153351, intron 2 of 21)	intron (NR_153351, intron 2 of 21)	1435.0	NM_001359837	100978.0	Mm.187453	NM_133921	ENSMUSG00000072889	Nfxl1	1700012H24Rik|AW538212|D430033A06Rik|DNABF|GCF|Gm1058|TCF9	nuclear transcription factor, X-box binding-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-111150164-2	chr8	111150064	111150264	+	778.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	RodERV21-int|LTR|ERV1	-4666.0	NR_040364	434350.0	Mm.442061	NR_040363		9430091E24Rik	-	RIKEN cDNA 9430091E24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88555716-2	chr3	88555616	88555816	+	601.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_033526, intron 2 of 10)	intron (NM_033526, intron 2 of 10)	2000.0	NM_033526	94232.0	Mm.303059	NM_033526	ENSMUSG00000008604	Ubqln4	A1Up|A1u|AI663987|CIP75|UBIN	ubiquilin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25822624-2	chr7	25822524	25822724	+	554.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-6094.0	NM_028775	74134.0	Mm.275188	NM_028775	ENSMUSG00000040703	Cyp2s1	1200011C15Rik|AU041727|C79779	cytochrome P450, family 2, subfamily s, polypeptide 1	protein-coding	-1.17367364971587	-1.14665061133654	-1.15856004380685	-1.16834280623128	-1.17310571790619	-1.14406978763884	-0.42938571406771	-1.16659169643457	2.89727187181404	0.396361616615464	1
Merged-chr14-8478939-2	chr14	8478839	8479039	+	751.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028934, intron 13 of 15)	RSINE1|SINE|B4	-100176.0	NM_146050	18300.0	Mm.25351	NM_146050	ENSMUSG00000021749	Oit1	2310076N21Rik|AV067083|EF-7|Fam3d	oncoprotein induced transcript 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150257392-4	chr4	150257282	150257482	+	891.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20058.0	NM_001025388	433182.0	Mm.70666	NM_001025388	ENSMUSG00000059040	Eno1b	EG433182|Eno1|Gm5506	enolase 1B, retrotransposed	protein-coding	4.1452551477999	3.28362477990623	3.65353375120656	3.17133188877298	3.1136978447055	1.71902147505869	3.68122600511799	2.47543047186632	-1.07135588311046	0.118965592502893	0.541133408551742
Merged-chr4-130800727-4	chr4	130800634	130800834	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011520, intron 1 of 4)	intron (NM_011520, intron 1 of 4)	8197.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-99126991-4	chr4	99126896	99127096	+	856.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	-6081.0	NM_026082	67299.0	Mm.260623	NM_026082	ENSMUSG00000028556	Dock7	3110056M06Rik|Gm430	dedicator of cytokinesis 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-4770003-4	chr1	4769888	4770088	+	647.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15738.0	NM_001177658	27395.0	Mm.182927	NM_025300	ENSMUSG00000033845	Mrpl15	HSPC145|MRP-L7|Rpml7	mitochondrial ribosomal protein L15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180697026-2	chr1	180696926	180697126	+	684.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013729)	promoter-TSS (NM_013729)	8.0	NM_013729	27217.0	Mm.103647	NM_013729	ENSMUSG00000026497	Mixl1	Mm1|Mml	Mix1 homeobox-like 1 (Xenopus laevis)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117175175-4	chr11	117175077	117175277	+	934.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-24484.0	NM_001113486	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-91765362-4	chr12	91765269	91765469	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 1 of 6)	intron (NM_175367, intron 1 of 6)	21067.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-71144053-6	chr6	71143951	71144151	+	905.5610960000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178413, intron 1 of 9)	CpG	329.0	NM_001033929	232078.0	Mm.37547	NM_178413	ENSMUSG00000054474	Thnsl2	BC051244|TSH2	threonine synthase-like 2 (bacterial)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-178339863-2	chr1	178339763	178339963	+	835.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-2048.0	NR_149827	51810.0	Mm.86589	NM_016805	ENSMUSG00000039630	Hnrnpu	AA408410|AI256620|AL024194|AL024437|AW557595|C86794|Hnrpu|SAFA|Sp120|hnRNP U	heterogeneous nuclear ribonucleoprotein U	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129508105-4	chr4	129508000	129508200	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5481.0	NM_010807	17357.0	Mm.424974	NM_010807	ENSMUSG00000047945	Marcksl1	AL022768|AW215397|AW536807|D4Bc1|F52|MacMARCKS|Macs2|Macs3|Mlp|Mrp	MARCKS-like 1	protein-coding	2.98943531609536	3.84216688872353	4.47291347867055	2.12540354667007	3.28954136252539	4.46616155832687	4.5837320505756	1.89638474297173	0.397199403310053	0.711532438607576	0.998431161219273
Merged-chr18-12154302-4	chr18	12154214	12154414	+	927.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024182, intron 12 of 12)	intron (NM_024182, intron 12 of 12)	-14416.0	NM_029623	76482.0	Mm.196596	NM_029623	ENSMUSG00000024410	3110002H16Rik	2400010D15Rik|Mic-1|Mic1|Rmc1|Wdr98	RIKEN cDNA 3110002H16 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-34371867-4	chr6	34371790	34371990	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12357.0	NM_172398	67861.0	Mm.70371	NM_172398	ENSMUSG00000061758	Akr1b10	2310005E10Rik|Akr1b16	aldo-keto reductase family 1, member B10 (aldose reductase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56757576-4	chr17	56757492	56757692	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008738)	promoter-TSS (NM_008738)	-44.0	NM_008738	18188.0	Mm.8074	NM_008738	ENSMUSG00000039481	Nrtn	NTN	neurturin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45896834-4	chr7	45896745	45896945	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291064)	promoter-TSS (NM_001291064)	-134.0	NM_021482	58867.0	Mm.214217	NM_021482	ENSMUSG00000040231	Syngr4	1700016O14Rik	synaptogyrin 4	protein-coding	5.95074123375971	6.26143703140978	5.14106781186798	6.01638225150576	5.38990202255698	4.8028246760017	5.06276982528475	4.83851532444812	-0.965103990833712	0.00175248124433603	0.0303555389358186
Merged-chr14-93701247-3	chr14	93701150	93701350	+	841.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081377, intron 2 of 4)	intron (NM_001081377, intron 2 of 4)	189419.0	NM_001271800	211712.0	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding	1.55176015500022	0.198594680997573	0.884678640186776	0.180065572056224	0.515547268330924	0.200906173481358	0.19052334071317	0.181498940869444	-3.09700473854019	0.122421054006517	1
Merged-chr6-99300471-4	chr6	99300379	99300579	+	726.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053202, intron 2 of 18)	intron (NM_053202, intron 2 of 18)	-33964.0	NM_001197321	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-63480318-2	chr4	63480218	63480418	+	956.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001008791, intron 1 of 12)	MIR|SINE|MIR	15673.0	NM_001008793	73750.0	Mm.300397	NM_028640	ENSMUSG00000039137	Whrn	1110035G07Rik|AW122018|AW742671|C430046P22Rik|Dfnb31|Ush2d|wi	whirlin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-99460965-4	chr10	99460873	99461073	+	999.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-148198.0	NR_038019	100504202.0	Mm.403801	NR_038019	ENSMUSG00000111962	Gm20110	-	predicted gene, 20110	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-73553731-2	chr15	73553631	73553831	+	871.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_152151, intron 13 of 23)	intron (NR_152151, intron 13 of 23)	41171.0	NM_001081066	105841.0	Mm.322557	NM_001081066	ENSMUSG00000036661	Dennd3	AI447457|E030003N15Rik	DENN/MADD domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-35452606-3	chr2	35452496	35452696	+	972.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010283, intron 1 of 8)	intron (NM_010283, intron 1 of 8)	8853.0	NM_001308299	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-21175254-4	chr5	21175135	21175335	+	935.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1044.0	NR_153366	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-34636686-4	chr5	34636618	34636818	+	940.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001356979, exon 2 of 13)	exon (NM_001356979, exon 2 of 13)	494.0	NM_001356978	68294.0	Mm.34564	NM_026660	ENSMUSG00000001082	Mfsd10	0610009O03Rik|Tetran	major facilitator superfamily domain containing 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-158132117-2	chr2	158132008	158132208	+	990.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_009373, intron 5 of 12)	intron (NM_009373, intron 5 of 12)	14284.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	1.48863286869666	0.781403405016155	0.767896063958895	0.75730908843141	1.19584576718726	1.7243756407778	1.30698064407722	1.49538715486833	1.8085746851016	0.208393666278699	0.697500615960152
Merged-chr18-83938351-4	chr18	83938255	83938455	+	685.020813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	148207.0	NM_001081300	110796.0	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-121850135-4	chr8	121850057	121850257	+	939.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20588.0	NM_145605	234825.0	Mm.209329	NM_145605	ENSMUSG00000040263	Klhdc4	AA408426|AV352552|BC012312|G430025P05Rik	kelch domain containing 4	protein-coding	2.56861188164699	2.22675079634184	2.44843551030607	2.70677906997755	2.67748256394387	3.38389831134449	1.77110844467818	2.62129258091055	0.481780900446394	0.542735785900623	0.954987870439334
Merged-chr17-74457818-3	chr17	74457692	74457892	+	946.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033367, intron 1 of 8)	intron (NM_001033367, intron 1 of 8)	1316.0	NM_001033367	268973.0	Mm.311884	NM_001033367	ENSMUSG00000039193	Nlrc4	9530011P19Rik|CLAN|CLAN1|CLANA|CLANB|CLANC|CLAND|Card12|IPAF	NLR family, CARD domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117970788-2	chr11	117970688	117970888	+	582.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1422.0	NM_007707	12702.0	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-137525543-2	chr5	137525443	137525643	+	610.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_031408, exon 23 of 24)	exon (NM_031408, exon 23 of 24)	4051.0	NR_105846	102465227.0		NR_105846	ENSMUSG00000098597	Mir6418	Gm27629|mir-6418|mmu-mir-6418	microRNA 6418	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-11353259-3	chr18	11353142	11353342	+	874.622192	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-280034.0	NM_001252495	225182.0	Mm.154275	NM_175458	ENSMUSG00000041238	Rbbp8	9930104E21Rik|CtIP|RBBP-8|RIM|SAE2	retinoblastoma binding protein 8, endonuclease	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-66287719-3	chr7	66287623	66287823	+	692.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146191, intron 19 of 33)	intron (NM_146191, intron 19 of 33)	94001.0	NR_106024	102465640.0		NR_106024	ENSMUSG00000098353	Mir7057	Gm27550|mmu-mir-7057	microRNA 7057	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-69540409-1	chr12	69540309	69540509	+	579.0	f1_c57bl6.idr	Intergenic	Intergenic	42619.0	NM_001033236	207965.0	Mm.102487	NM_001033236	ENSMUSG00000049882	Vcpkmt	Gm71|Mettl21d|Mettl221d|VCP-KMT	valosin containing protein lysine (K) methyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70932151-1	chr14	70932051	70932251	+	793.666687	f0_balb.idr	intron (NM_001302094, intron 3 of 7)	intron (NM_001302094, intron 3 of 7)	42044.0	NM_001302094	14586.0	Mm.32619	NM_008115	ENSMUSG00000022103	Gfra2	-	glial cell line derived neurotrophic factor family receptor alpha 2	protein-coding	-0.220768268560134	-0.00653159815678669	-0.210499224434395	-0.0449101368491344	0.660384035201211	-0.204384302974389	-0.0233410291736103	-0.213681375326283	2.0691607051147	0.361228206264083	1
Merged-chr3-148248830-4	chr3	148248744	148248944	+	957.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F1|LTR|ERVL-MaLR	705791.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120632726-4	chr11	120632681	120632881	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010756, intron 1 of 2)	CpG	766.0	NM_010756	17134.0	Mm.268010	NM_010756	ENSMUSG00000051510	Mafg	AA545192|C630022N07Rik	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein G (avian)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-88195370-1	chr17	88195270	88195470	+	732.0	f1_c57bl6.idr	Intergenic	ERVL-B4-int|LTR|ERVL	69858.0	NM_001190356	225058.0	Mm.312053	NM_001190356		Gm4832	EG225058	predicted gene 4832	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-53399296-3	chr19	53399201	53399401	+	871.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8667.0	NM_172429	76479.0	Mm.313687	NM_172429	ENSMUSG00000025024	Smndc1	-	survival motor neuron domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97662430-4	chr11	97662293	97662493	+	683.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1019.0	NM_139311	246198.0	Mm.23685	NM_139311	ENSMUSG00000038437	Mllt6	AI315037|Af17	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-31074389-1	chr17	31074289	31074489	+	664.0	f1_balb.idr	intron (NM_009593, intron 2 of 14)	intron (NM_009593, intron 2 of 14)	16695.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	2.31228247743528	3.71120179034792	1.87985639042358	1.3229646278114	3.19392930120811	2.34903050774251	2.6655887353029	2.18846273207329	0.0143000345941521	0.987510806729699	0.998431161219273
Merged-chr10-111161497-3	chr10	111161415	111161615	+	764.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-3287.0	NM_001003717	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-98671636-4	chr7	98671518	98671718	+	704.270874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15049.0	NM_172280	233545.0	Mm.387819	NM_172280	ENSMUSG00000035401	Emsy	2210018M11Rik|2310016L09Rik|AU019521|AU019557	EMSY, BRCA2-interacting transcriptional repressor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-25665288-2	chr14	25665188	25665388	+	853.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001310666, exon 24 of 24)	3' UTR (NM_001310666, exon 24 of 24)	-28882.0	NM_134084	105675.0	Mm.41656	NM_134084	ENSMUSG00000021868	Ppif	AW457192|CyP-D|CyP-F|CypD|PPIase	peptidylprolyl isomerase F (cyclophilin F)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4910117-2	chr16	4910017	4910217	+	814.200012	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357062, intron 2 of 17)	intron (NM_001357062, intron 2 of 17)	24017.0	NM_001357061	17237.0	Mm.291326	NM_029657	ENSMUSG00000022517	Mgrn1	2610042J20Rik|mKIAA0544|md|nc	mahogunin, ring finger 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-119129695-1	chr10	119129595	119129795	+	584.0	f1_c57bl6.idr	Intergenic	RMER16_Mm|LTR|ERVK	36790.0	NR_045348	73400.0	Mm.416864	NR_045348	ENSMUSG00000100681	1700064J06Rik	-	RIKEN cDNA 1700064J06 gene	ncRNA	1.75100667966204	1.97914656353817	2.67936351766279	2.45609430991221	1.29052610656808	2.13370512517986	1.13092265101789	1.34848424065184	-1.99620781228791	0.0602834187765302	0.36313005643177
Merged-chr5-121477874-3	chr5	121477778	121477978	+	782.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161626, intron 4 of 9)	intron (NM_001161626, intron 4 of 9)	14697.0	NM_001161627	77462.0	Mm.358781	NM_029912	ENSMUSG00000029452	Tmem116	4930406A18Rik|4930513P12Rik|C030022K24Rik	transmembrane protein 116	protein-coding	1.48766590181435	1.40773286028107	0.848100942847403	0.457345255276015	0.62151719569211	0.479329107173087	0.681463109871526	0.458851632928475	-3.1158182751496	0.0692928430887745	0.395265704300689
Merged-chr16-77083124-3	chr16	77083017	77083217	+	773.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013918, intron 16 of 23)	RLTR11A2|LTR|ERVK	69048.0	NM_013918	30940.0	Mm.40986	NM_013918	ENSMUSG00000022867	Usp25	-	ubiquitin specific peptidase 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-13774900-4	chr9	13774803	13775003	+	952.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_024025, intron 1 of 15)	RodERV21-int|LTR|ERV1	25722.0	NM_023858	77116.0	Mm.210405	NM_023858	ENSMUSG00000031918	Mtmr2	6030445P13Rik	myotubularin related protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120547593-2	chr8	120547493	120547693	+	854.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145896, intron 1 of 15)	intron (NM_001145896, intron 1 of 15)	8897.0	NR_106159	102466849.0		NR_106159	ENSMUSG00000098280	Mir7687	Gm27573|mmu-mir-7687	microRNA 7687	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-95530924-4	chr10	95530800	95531000	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080560, intron 1 of 3)	MTD|LTR|ERVL-MaLR	15738.0	NM_080560	93765.0	Mm.371667	NM_080560	ENSMUSG00000074781	Ube2n	1500026J17Rik|AL022654|BB101821|UBC13	ubiquitin-conjugating enzyme E2N	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-98018330-4	chr5	98018220	98018420	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133738, intron 3 of 16)	intron (NM_133738, intron 3 of 16)	12642.0	NM_133738	71914.0	Mm.24842	NM_133738	ENSMUSG00000029338	Antxr2	2310046B19Rik|AW561899|CMG-2|CMG2|cI-35	anthrax toxin receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-48618862-2	chr9	48618762	48618962	+	783.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13739.0	NM_001311062	18113.0	Mm.8362	NM_010924	ENSMUSG00000032271	Nnmt	-	nicotinamide N-methyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125337868-2	chr6	125337817	125338017	+	584.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_011324, intron 4 of 11)	intron (NM_011324, intron 4 of 11)	-11806.0	NM_011609	21937.0	Mm.1258	NM_011609	ENSMUSG00000030341	Tnfrsf1a	CD120a|FPF|TNF-R|TNF-R-I|TNF-R1|TNF-R55|TNF-alphaR1|TNFAR|TNFR60|TNFRI|TNFRp55|TNFalpha-R1|Tnfr-2|Tnfr1|p55|p55-R	tumor necrosis factor receptor superfamily, member 1a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-57340203-2	chr17	57340103	57340303	+	925.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-18483.0	NM_001355723	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-65766086-4	chr17	65765988	65766188	+	951.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133685, intron 1 of 6)	MTD|LTR|ERVL-MaLR	6664.0	NM_133685	106572.0	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	2.62280391646466	4.22039056435819	3.93605248807664	3.59284651230997	2.01704883680036	2.99639007092187	3.41867405086491	3.22478811331407	-1.09651721697015	0.0914030540007596	0.467487992467825
Merged-chr10-58255437-4	chr10	58255329	58255529	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027375)	promoter-TSS (NM_027375)	-97.0	NM_027375	70297.0	Mm.25531	NM_027375	ENSMUSG00000038039	Gcc2	0610043A03Rik|2210420P05Rik|2600014C01Rik|AW112121|mKIAA0336	GRIP and coiled-coil domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-42173271-2	chr10	42173171	42173371	+	646.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	103471.0	NM_019740	56484.0	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-67755156-4	chr13	67755039	67755239	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001001130)	promoter-TSS (NM_001001130)	-5.0	NM_001001130	22746.0	Mm.288396	NM_001001130	ENSMUSG00000058331	Zfp85	KRAB19|Rslcan2|Zfp71|Zfp85-rs1	zinc finger protein 85	protein-coding	5.45061905570405	5.35643470934224	6.20074389932092	4.71561359209254	5.11748997219193	5.67296690108483	5.79304002300991	4.20010702774161	-0.245062441200977	0.524720705094728	0.948340152465298
Merged-chr6-21101088-2	chr6	21100988	21101188	+	675.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A4-int|LTR|ERVL-MaLR	-115021.0	NM_019697	16508.0	Mm.425316	NM_019697	ENSMUSG00000060882	Kcnd2	AI839615|AW555701|Kv4.2|R75121|mKIAA1044	potassium voltage-gated channel, Shal-related family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-180996618-2	chr2	180996524	180996724	+	965.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_028518, intron 8 of 35)	intron (NM_028518, intron 8 of 35)	10089.0	NM_028518	73368.0	Mm.345095	NM_028518	ENSMUSG00000016356	Col20a1	1700051I12Rik	collagen, type XX, alpha 1	protein-coding	-0.495285215446608	-0.0875682522950664	-0.485092114925534	-0.488907309052869	-0.494332889146162	0.425655009844996	-0.484005075547935	-0.488239375222988	1.75584477072534	0.514360671048305	1
Merged-chr9-75433711-2	chr9	75433611	75433811	+	677.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	-7813.0	NM_001039522	235497.0	Mm.41508	NM_001006122	ENSMUSG00000042487	Leo1	Gm185	Leo1, Paf1/RNA polymerase II complex component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101837899-4	chr7	101837772	101837972	+	987.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001122739)	promoter-TSS (NM_001122739)	-48.0	NM_001122739	16332.0	Mm.476000	NM_010567	ENSMUSG00000032737	Inppl1	51C|SHIP2	inositol polyphosphate phosphatase-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-11916068-2	chr19	11915968	11916168	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172635, intron 2 of 18)	intron (NM_172635, intron 2 of 18)	3669.0	NM_172635	225929.0	Mm.42711	NM_172635	ENSMUSG00000046139	Patl1	AV312086|Pat1b	protein associated with topoisomerase II homolog 1 (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-13761455-4	chr17	13761329	13761529	+	912.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022311)	promoter-TSS (NM_022311)	-35.0	NM_022311	21646.0	Mm.486358	NM_022311	ENSMUSG00000038347	Tcte2	AI429268|Tcte-2	t-complex-associated testis expressed 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-143113594-2	chr5	143113494	143113694	+	628.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207110)	promoter-TSS (NM_207110)	-574.0	NM_001359851	108086.0	Mm.381440	NM_080561	ENSMUSG00000045078	Rnf216	2810055G22Rik|AI647468|AU019462|C86502|F830018F18Rik|TRIAD3|UIP83|Ubce7ip1	ring finger protein 216	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-33295305-3	chr2	33295188	33295388	+	683.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290570, intron 3 of 16)	intron (NM_001290570, intron 3 of 16)	76206.0	NM_001290570	241308.0	Mm.274249	NM_175211	ENSMUSG00000038831	Ralgps1	5830418G11Rik|AI853783|AI854138|RALGEF2|RALGPS1A|RalGEF 2|mKIAA0351	Ral GEF with PH domain and SH3 binding motif 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-24697263-3	chr12	24697151	24697351	+	804.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr	Intergenic	Intergenic	-11003.0	NM_009104	20135.0	Mm.99	NM_009104	ENSMUSG00000020649	Rrm2	AA407299|R2	ribonucleotide reductase M2	protein-coding	3.53381951873827	3.05448266980356	2.57625095338147	1.46936338000637	3.28214288604941	4.02080007656127	2.06430200590168	2.87490360671794	0.626667855821039	0.438106478681644	0.908612234382228
Merged-chr14-98873597-3	chr14	98873533	98873733	+	846.7333369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	172503.0	NM_175245	76789.0	Mm.38912	NM_175245	ENSMUSG00000033186	Mzt1	2410129H14Rik|AI120158|Mozart1	mitotic spindle organizing protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-170998419-4	chr1	170998304	170998504	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20522.0	NM_144559	246256.0	Mm.251254	NM_144559	ENSMUSG00000059089	Fcgr4	4833442P21Rik|CD16-2|FcgRIV|FcgammaRIV|Fcgr3a|Fcrl3	Fc receptor, IgG, low affinity IV	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-122956438-2	chr9	122956338	122956538	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010620, intron 1 of 34)	B1_Mus2|SINE|Alu	5357.0	NM_010620	209737.0	Mm.278920	NM_010620	ENSMUSG00000036768	Kif15	3110023M17Rik|3930402I10Rik|D330038N01|HKLP2|Knsl7|b2b1117.1Clo|b2b1117.1aClo	kinesin family member 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-69458549-4	chr12	69458456	69458656	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16994.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-120845224-1	chr4	120845124	120845324	+	575.0	f0_c57.idr	Intergenic	Intergenic	-9575.0	NM_182929	242662.0	Mm.192502	NM_182929	ENSMUSG00000032890	Rims3	A730060M23Rik|Nim3|Rim3|mKIAA0237	regulating synaptic membrane exocytosis 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-110458060-2	chr9	110457960	110458160	+	682.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360306, intron 1 of 9)	intron (NM_001360306, intron 1 of 9)	18634.0	NM_001360306	270201.0	Mm.41744	NM_177771	ENSMUSG00000054792	Klhl18	A930041K15|AW545966	kelch-like 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-36768646-4	chr9	36768528	36768728	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1050.0	NM_008408	16430.0	Mm.2863	NM_008408	ENSMUSG00000032116	Stt3a	AA408947|BB081708|Itm1	STT3, subunit of the oligosaccharyltransferase complex, homolog A (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-32396402-4	chr16	32396299	32396499	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4107.0	NM_001160402	277203.0	Mm.484240	NM_001160402	ENSMUSG00000079625	Tm4sf19	EG277203	transmembrane 4 L six family member 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-25635266-2	chr15	25635166	25635366	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019472, intron 1 of 40)	(TG)n|Simple_repeat|Simple_repeat	12716.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-58889453-4	chr15	58889391	58889591	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_175151)	TTS (NM_175151)	262.0	NM_175226	75841.0	Mm.4537	NM_175226	ENSMUSG00000037075	Rnf139	4930555P18Rik	ring finger protein 139	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31415367-2	chr14	31415267	31415467	+	906.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011894, intron 2 of 8)	intron (NM_011894, intron 2 of 8)	2310.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-83860587-2	chr17	83860487	83860687	+	578.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6169.0	NR_155491	320021.0	Mm.379475	NR_155490		C430042M11Rik	-	RIKEN cDNA C430042M11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116625680-4	chr11	116625582	116625782	+	857.154785	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172572, intron 1 of 18)	intron (NM_172572, intron 1 of 18)	1337.0	NM_172572	217344.0	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	2.95639355422821	3.21882170829018	3.97289290028168	2.5175379617165	3.55556433177607	3.61310188277106	3.4157305154962	2.80947558318592	0.165794167861395	0.78971634149263	0.998431161219273
Merged-chr14-120401271-2	chr14	120401171	120401371	+	642.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360380, intron 7 of 7)	intron (NM_001360380, intron 7 of 7)	-77190.0	NM_029519	76108.0	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-78069746-4	chr10	78069646	78069846	+	958.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015790, intron 1 of 6)	CpG	378.0	NM_015790	50723.0	Mm.17819	NM_015790	ENSMUSG00000000732	Icosl	AU044799|B7-H2|B7RP-1|B7h|BG071784|GI50|GL50|GL50-B|ICOS-L|Icoslg|LICOS|Ly115l|mKIAA0653	icos ligand	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-156177361-2	chr2	156177262	156177462	+	952.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001291114, exon 3 of 17)	exon (NM_001291114, exon 3 of 17)	2218.0	NM_001291115	170791.0	Mm.392436	NM_133242	ENSMUSG00000027620	Rbm39	1500012C14Rik|2310040E03Rik|B330012G18Rik|C79248|R75070|Rnpc2|caper	RNA binding motif protein 39	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-47225685-2	chr19	47225585	47225785	+	718.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021360, intron 1 of 5)	PB1D10|SINE|Alu	-3158.0	NM_001163480	18011.0	Mm.313651	NM_021360	ENSMUSG00000006435	Neurl1a	2410129E16Rik|AI450910|AI481072|Neu1|Neur1|Neurl|Neurl1|Nlz|Rnf67	neuralized E3 ubiquitin protein ligase 1A	protein-coding	-0.614396344481327	0.551843571174625	-0.602729847524026	-0.607075942843264	-0.430720237882536	-0.595921239132547	-0.601495959602631	-0.606313307467801	-2.94366377588233	0.263055040872249	1
Merged-chr17-71268145-2	chr17	71268046	71268246	+	972.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357338, intron 4 of 7)	intron (NM_001357338, intron 4 of 7)	42865.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	3.24281798064927	1.99711708545743	3.12746355459642	2.69970546925777	3.36803444144627	2.21382165764579	2.13648255731932	1.39126227899893	-0.647119807066451	0.462174241585431	0.921194606787634
Merged-chr10-84646820-4	chr10	84646725	84646925	+	872.142822	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027423, exon 10 of 28)	exon (NM_027423, exon 10 of 28)	24388.0	NM_027423	70428.0	Mm.335007	NM_027423	ENSMUSG00000034453	Polr3b	2700078H01Rik|A330032P03Rik|C85372|RPC2	polymerase (RNA) III (DNA directed) polypeptide B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-77896507-3	chr1	77896456	77896656	+	859.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	300580.0	NM_001159520	18505.0	Mm.1371	NM_008781	ENSMUSG00000004872	Pax3	Pax-3|Sp|Splchl2|splotch	paired box 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-118011033-4	chr2	118010873	118011073	+	822.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_126479, intron 8 of 9)	intron (NR_126479, intron 8 of 9)	100229.0	NR_126479	329496.0	Mm.235844	NR_126479	ENSMUSG00000087203	Gm13986	C230060E24	predicted gene 13986	ncRNA	1.53393092145561	1.44336661478251	1.6016862280243	0.714576187663559	0.87704164336463	0.741253322945266	0.727948480041277	1.4568742004735	-1.52422603505679	0.304667233203347	0.806210138838192
Merged-chr2-90461686-2	chr2	90461586	90461786	+	627.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 7 of 23)	B1_Mur1|SINE|Alu	17488.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-138143820-4	chr3	138143719	138143919	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163457)	promoter-TSS (NM_001163457)	20.0	NM_001348197	108943.0	Mm.471692	NM_175389	ENSMUSG00000004127	Trmt10a	3110023L08Rik|AA794508|Rg9mtd2|Rnmtd2	tRNA methyltransferase 10A	protein-coding	5.64011824164762	6.44691725877919	4.25790377621734	5.71902720146048	5.40109362674569	5.61447261598177	5.4543749211833	5.74304525434076	-0.170660862119279	0.632841590756416	0.982230082053879
Merged-chr17-28738937-2	chr17	28738837	28739037	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001168513, intron 9 of 11)	intron (NM_001168513, intron 9 of 11)	-30380.0	NM_011950	26415.0	Mm.27970	NM_011950	ENSMUSG00000004864	Mapk13	SAPK4|Serk4	mitogen-activated protein kinase 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-83727857-4	chr17	83727758	83727958	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054082, intron 3 of 16)	intron (NM_054082, intron 3 of 16)	21695.0	NM_001171052	116871.0	Mm.277668	NM_054082	ENSMUSG00000055817	Mta3	1110002J22Rik|mKIAA1266	metastasis associated 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-136402402-2	chr2	136402302	136402502	+	573.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	-14435.0	NM_172858	241656.0	Mm.131572	NM_172858	ENSMUSG00000039913	Pak7	2900083L08Rik|PAK-5|PAK-7|Pak5	p21 (RAC1) activated kinase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124674866-2	chr6	124674766	124674966	+	584.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_149320, intron 1 of 11)	intron (NR_149320, intron 1 of 11)	11762.0	NM_145130	14792.0	Mm.273915	NM_145130	ENSMUSG00000004270	Lpcat3	C3f|Grcc3f|Lpcat|Lpeat|Lplat5|Lpsat|Mboat5|Moact5|Oact5|PTG	lysophosphatidylcholine acyltransferase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81564552-2	chr10	81564452	81564652	+	772.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001276288, intron 3 of 6)	intron (NM_001276288, intron 3 of 6)	5108.0	NM_001276288	14797.0	Mm.180013	NM_010347	ENSMUSG00000054452	Aes	AL024115|Esp1|Grg|Grg-5|Grg5|Tle5	amino-terminal enhancer of split	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-102419164-2	chr5	102419064	102419264	+	551.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62227.0	NM_146161	231532.0	Mm.440191	NM_029270	ENSMUSG00000057315	Arhgap24	0610025G21Rik	Rho GTPase activating protein 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180419367-2	chr1	180419267	180419467	+	577.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081175, intron 5 of 7)	intron (NM_001081175, intron 5 of 7)	64137.0	NM_001081227	381310.0	Mm.44791	NM_001081227	ENSMUSG00000053963	Stum	6330403A02Rik|Gm10001|R75555	mechanosensory transduction mediator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-56680780-2	chr19	56680680	56680880	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A2|LTR|ERVL-MaLR	-41592.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-29825020-2	chr5	29824920	29825120	+	612.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-89084.0	NR_028426	332993.0	Mm.473746	NR_028426		Gm5129	EG332993	predicted gene 5129	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-81828952-1	chr7	81828852	81829052	+	841.0	f0_balb.idr	intron (NM_146193, intron 1 of 7)	CpG	479.0	NM_146193	83962.0	Mm.439893	NM_146193	ENSMUSG00000025103	Btbd1	1190005H08Rik	BTB (POZ) domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-106760661-2	chr7	106760561	106760761	+	687.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	-7275.0	NM_146602	258595.0	Mm.377585	NM_146602	ENSMUSG00000059087	Olfr698	MOR283-3	olfactory receptor 698	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129604299-4	chr2	129604193	129604393	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355160, intron 1 of 7)	intron (NM_001355160, intron 1 of 7)	8831.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	4.21648891129966	4.3832675306139	4.00852768526531	4.6194824203036	4.16112304606293	3.3660393904309	3.65897718017115	3.62844763367661	-0.790415291793553	0.0798678957431436	0.429744017950116
Merged-chr10-12921826-2	chr10	12921726	12921926	+	991.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_038028, intron 1 of 2)	intron (NR_038028, intron 1 of 2)	1301.0	NR_038027	320273.0	Mm.417706	NR_038027	ENSMUSG00000097378	B230208H11Rik	-	RIKEN cDNA B230208H11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-32781665-4	chr14	32781550	32781750	+	930.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4313.0	NM_001163616	69069.0	Mm.261609	NM_001163616	ENSMUSG00000041707	1810011H11Rik	4733401I05Rik	RIKEN cDNA 1810011H11 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-116079346-4	chr9	116079256	116079456	+	843.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	96007.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128820197-2	chr10	128820097	128820297	+	795.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001359824)	TTS (NM_001359824)	1432.0	NM_001359170	66844.0	Mm.235562	NM_024180	ENSMUSG00000025353	Ormdl2	0610012C09Rik	ORM1-like 2 (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78610422-3	chr15	78610267	78610467	+	780.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028195, intron 7 of 12)	intron (NM_028195, intron 7 of 12)	13320.0	NM_028195	72318.0	Mm.32911	NM_028195	ENSMUSG00000018008	Cyth4	2510004M07Rik|5830469K17Rik|AI467541|Pscd4|mFLJ00017	cytohesin 4	protein-coding	2.21283149374935	1.14345038186434	3.06368682722296	2.13799824487546	1.92099438540027	1.1505719533643	1.11821854768525	2.44899157099257	-1.19855956013632	0.295595825039521	0.7986401962885
Merged-chr14-59201982-4	chr14	59201878	59202078	+	797.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027764, intron 1 of 11)	intron (NM_027764, intron 1 of 11)	750.0	NM_001360610	71330.0	Mm.234195	NM_027764	ENSMUSG00000035469	Rcbtb1	5430409I18Rik|AW111883|CLLD7|CLLL7	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-16088972-2	chr10	16088872	16089072	+	827.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M3|LINE|L1	297195.0	NR_131087	77538.0	Mm.128235	NR_131087	ENSMUSG00000112227	C330004P14Rik	-	RIKEN cDNA C330004P14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-111802491-2	chr13	111802391	111802591	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011945, intron 1 of 19)	intron (NM_011945, intron 1 of 19)	6502.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-25263221-3	chr2	25263135	25263335	+	848.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175286, exon 1 of 4)	exon (NM_175286, exon 1 of 4)	637.0	NM_175286	97031.0	Mm.308539	NM_175286	ENSMUSG00000048707	Tprn	C430004E15Rik|C87750	taperin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-75993738-1	chr15	75993638	75993838	+	574.0	f0_balb.idr	promoter-TSS (NM_177922)	promoter-TSS (NM_177922)	-31.0	NM_177922	332110.0	Mm.40843	NM_177922	ENSMUSG00000063704	Mapk15	BC048082	mitogen-activated protein kinase 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-86883660-2	chr8	86883560	86883760	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030563, intron 1 of 6)	B2_Mm2|SINE|B2	1598.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-125699771-4	chr8	125699672	125699872	+	887.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR41C|LTR|ERV1	29954.0	NM_028908	74393.0	Mm.41709	NM_028908	ENSMUSG00000050930	Map10	4933403G14Rik|AI835009|mKIAA1383	microtubule-associated protein 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-137047783-3	chr4	137047675	137047875	+	765.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198248, intron 1 of 18)	intron (NM_198248, intron 1 of 18)	920.0	NM_198248	230848.0	Mm.31068	NM_198248	ENSMUSG00000060862	Zbtb40	BC059177|C230087D24|Gm571|mKIAA0478	zinc finger and BTB domain containing 40	protein-coding	2.26111107490542	2.65006413768776	2.8594286772196	2.10301965202931	2.66551819833722	2.54463534393032	2.32832382865307	2.87731763816566	0.254582624373535	0.737642870434901	0.998431161219273
Merged-chr2-156311008-3	chr2	156310890	156311090	+	820.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_020255)	TTS (NM_020255)	-1483.0	NM_027585	70873.0	Mm.475234	NM_027585	ENSMUSG00000038085	Cnbd2	4921517L17Rik|5430421B09Rik|Cris	cyclic nucleotide binding domain containing 2	protein-coding	1.05321679165869	0.503922469045425	0.49584850435712	0.657816400583216	1.14768452455453	1.01476285234371	0.497631407746365	0.930755540210854	1.1690518025606	0.484080783110056	1
Merged-chr2-73509779-4	chr2	73509664	73509864	+	834.05835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	19723.0	NM_153138	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-60348129-4	chr10	60348032	60348232	+	895.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028732, intron 1 of 6)	intron (NM_028732, intron 1 of 6)	1281.0	NM_028732	74048.0	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-86478935-2	chr9	86478835	86479035	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177208, intron 1 of 38)	intron (NM_177208, intron 1 of 38)	11781.0	NM_177208	320615.0	Mm.245500	NM_177208	ENSMUSG00000034973	Dopey1	B130005I07Rik|BC035275|C130028L17|D9Ertd809e	dopey family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-8081434-3	chr14	8081342	8081542	+	802.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025938, intron 1 of 5)	RMER10A|LTR|ERVL	1129.0	NM_025938	67053.0	Mm.210048	NM_025938	ENSMUSG00000023156	Rpp14	2610511E03Rik|AA682089	ribonuclease P 14 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-98722027-1	chr7	98721927	98722127	+	598.0	f1_balb.idr	Intergenic	Intergenic	18780.0	NM_028410	72981.0	Mm.4428	NM_028410	ENSMUSG00000030753	Thap12	2900052B10Rik|Dap4|Prkrir|Rpkrir	THAP domain containing 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-41394600-2	chr8	41394515	41394715	+	948.5	f0_balb.idr|f1_balb.idr	Intergenic	B1_Mus2|SINE|Alu	-19918.0	NM_019734	11886.0	Mm.22547	NM_019734	ENSMUSG00000031591	Asah1	2310081N20Rik|AC|Asah	N-acylsphingosine amidohydrolase 1	protein-coding	1.57956492380631	2.734617640883	2.45493197559144	2.6804223748968	1.59970455964848	4.40210374798459	4.39535180953572	4.74075636469812	2.64724593675722	0.000431953428804795	0.00996487931342802
Merged-chr10-126928344-3	chr10	126928244	126928444	+	986.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-26973.0	NM_001358970	68876.0	Mm.276769	NM_026858	ENSMUSG00000025436	Atp23	1110068E08Rik|2410012H02Rik|Xrcc6bp1	ATP23 metallopeptidase and ATP synthase assembly factor homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95906313-3	chr3	95906213	95906413	+	591.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1628.0	NM_001355750	23831.0	Mm.489647	NM_011797	ENSMUSG00000038526	Car14	AW536446|CA-XIV|Ca14	carbonic anhydrase 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-39944532-3	chr1	39944435	39944635	+	820.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252202, intron 2 of 29)	intron (NM_001252202, intron 2 of 29)	43622.0	NM_008696	26921.0	Mm.491139	NM_008696	ENSMUSG00000026074	Map4k4	9430080K19Rik|AU043147|AU045934|AW046177|HGK|Nik	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-108340546-4	chr9	108340448	108340648	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001329528)	TTS (NM_001329528)	1468.0	NM_001329527	14775.0	Mm.1090	NM_008160	ENSMUSG00000063856	Gpx1	AI195024|AL033363|CGPx|GPx-1|GSHPx-1|Gpx	glutathione peroxidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-136125724-4	chr4	136125632	136125832	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-18090.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	4.15731322154295	3.83256831849203	4.78880438518339	4.88176318666789	4.63238443985667	3.76699039099284	4.18162730323573	4.28709603996464	-0.290633859954616	0.500618703791239	0.938112745952825
Merged-chr4-95084152-3	chr4	95084054	95084254	+	814.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-31932.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-111117859-2	chr10	111117759	111117959	+	544.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46943.0	NM_001003717	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125601241-2	chr6	125601141	125601341	+	693.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011708, intron 13 of 51)	intron (NM_011708, intron 13 of 51)	48293.0	NM_011708	22371.0	Mm.22339	NM_011708	ENSMUSG00000001930	Vwf	6820430P06Rik|AI551257|B130011O06Rik|C630030D09|F8VWF|VWD	Von Willebrand factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-21204562-4	chr16	21204460	21204660	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010143)	promoter-TSS (NM_010143)	-235.0	NM_010143	13845.0	Mm.6972	NM_010143	ENSMUSG00000005958	Ephb3	AW456895|Cek10|Etk2|HEK2|MDK5|Sek4|Tyro6	Eph receptor B3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-32730931-3	chr12	32730837	32731037	+	624.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-89398.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-11428970-2	chr2	11428870	11429070	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30470.0	NR_040615	77543.0	Mm.490670	NR_040615	ENSMUSG00000102674	8030442B05Rik	-	RIKEN cDNA 8030442B05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-37526368-4	chr13	37526253	37526453	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	181008.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	4.45741862157246	4.30852527577125	4.75838501334703	4.83599211709495	4.64786173283831	4.94000551356518	4.5541171248722	5.34780256404819	0.369018919867896	0.306322005558874	0.806865344318695
Merged-chr15-16815532-2	chr15	16815432	16815632	+	695.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009869, intron 1 of 10)	Lx3C|LINE|L1	37431.0	NM_009869	12565.0	Mm.439758	NM_009869	ENSMUSG00000025370	Cdh9	-	cadherin 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-102247329-2	chr11	102247229	102247429	+	626.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1553.0	NM_153544	217216.0	Mm.247335	NM_153544	ENSMUSG00000034773	BC030867	-	cDNA sequence BC030867	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-15497043-2	chr15	15496943	15497143	+	623.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1281058.0	NM_009869	12565.0	Mm.439758	NM_009869	ENSMUSG00000025370	Cdh9	-	cadherin 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-155219968-3	chr4	155219854	155220054	+	798.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011385, intron 1 of 6)	intron (NM_011385, intron 1 of 6)	2581.0	NM_011385	20481.0	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	1.61326289132202	0.802224707960937	0.553060758260647	0.542893636097218	1.56258683553934	1.31046645555874	0.555936595185844	0.544682106680359	0.403240837236809	0.810402059192232	0.998431161219273
Merged-chr2-166066960-2	chr2	166066860	166067060	+	681.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008679, intron 18 of 22)	intron (NM_008679, intron 18 of 22)	74323.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-44202471-3	chr12	44202332	44202532	+	664.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7636.0	NM_013760	27362.0	Mm.27432	NM_013760	ENSMUSG00000014905	Dnajb9	AA408011|AA673251|AA673481|AW556981|ERdj4|Mdg1|mDj7	DnaJ heat shock protein family (Hsp40) member B9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5845465-6	chr19	5845371	5845571	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_003513)	promoter-TSS (NR_003513)	7.0	NR_131212	66961.0	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-116142422-4	chr6	116142309	116142509	+	926.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177412, intron 1 of 5)	Lx8|LINE|L1	50965.0	NM_177412	330401.0	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-83171341-4	chr15	83171223	83171423	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029787, intron 1 of 8)	intron (NM_029787, intron 1 of 8)	885.0	NM_029787	109754.0	Mm.22560	NM_029787	ENSMUSG00000018042	Cyb5r3	0610016L08Rik|2500002N19Rik|C85115|Dia-1|Dia1|WU:AL591952.1-001|WU:AL591952.1-002|WU:AL591952.1-003|WU:Cyb5r3	cytochrome b5 reductase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85526252-4	chr12	85526169	85526369	+	903.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	52379.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81803073-2	chr15	81802973	81803173	+	995.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_155271)	promoter-TSS (NR_155271)	400.0	NM_153484	21685.0	Mm.270278	NM_017376	ENSMUSG00000022389	Tef	2310028D20Rik	thyrotroph embryonic factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-84886549-3	chr10	84886455	84886655	+	849.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024918, intron 15 of 17)	intron (NM_001024918, intron 15 of 17)	-31058.0	NM_001013441	237422.0	Mm.18936	NM_183172	ENSMUSG00000035620	Ric8b	BC051080|Ric-8|Ric-8b	RIC8 guanine nucleotide exchange factor B	protein-coding	2.49675792031592	2.42380420290052	1.10165590783676	1.5159054280241	2.4558793360867	1.81123760998022	1.57213558275609	1.08373363934333	-0.459870316292873	0.68870654043178	0.996533206832645
Merged-chr7-142918794-2	chr7	142918694	142918894	+	635.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18828.0	NM_009377	21823.0	Mm.1292	NM_009377	ENSMUSG00000000214	Th	-	tyrosine hydroxylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-22398593-4	chr6	22398463	22398663	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42482.0	NM_138587	27999.0	Mm.490307	NM_138587	ENSMUSG00000029672	Fam3c	D6Wsu176e|Ilei	family with sequence similarity 3, member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-95586389-1	chr11	95586289	95586489	+	597.0	f1_balb.idr	intron (NM_033217, intron 1 of 5)	CpG	1309.0	NM_033217	18053.0	Mm.283893	NM_033217	ENSMUSG00000000120	Ngfr	LNGFR|Tnfrsf16|p75|p75NGFR|p75NTR	nerve growth factor receptor (TNFR superfamily, member 16)	protein-coding	0.99251068267023	0.682346576121297	0.665946269614863	1.98066510294084	1.80595189443917	0.685981238719661	0.669603386606929	1.47237540497703	0.121460832760215	0.938107761431706	0.998431161219273
Merged-chr8-120114568-3	chr8	120114476	120114676	+	998.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172286, intron 1 of 12)	CpG	424.0	NM_001163761	234797.0	Mm.101958	NM_172286	ENSMUSG00000031824	6430548M08Rik	AW049007|Kiaa0513|mKIAA0513	RIKEN cDNA 6430548M08 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-119934762-2	chr9	119934662	119934862	+	901.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028976, intron 1 of 8)	RMER6B|LTR|ERVK	2796.0	NM_028976	74498.0	Mm.104789	NM_028976	ENSMUSG00000032513	Gorasp1	5430411C10Rik|GOLPH5|GRASP65|P65	golgi reassembly stacking protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-175692838-4	chr1	175692719	175692919	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010098)	promoter-TSS (NM_010098)	-187.0	NM_010098	13603.0	Mm.32744	NM_010098	ENSMUSG00000026525	Opn3	ERO|Ecpn	opsin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-13073182-4	chr6	13073073	13073273	+	938.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027992, intron 3 of 8)	L2|LINE|L2	3414.0	NM_027992	71900.0	Mm.27742	NM_027992	ENSMUSG00000029571	Tmem106b	2310036D22Rik|5830455K21Rik|6430519M21Rik|AI428776|AI661344	transmembrane protein 106B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-75893054-3	chr13	75892958	75893158	+	989.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028493, intron 7 of 11)	intron (NM_028493, intron 7 of 11)	50766.0	NM_028493	73296.0	Mm.276200	NM_028493	ENSMUSG00000021589	Rhobtb3	1700040C17Rik|2610033K01Rik|4930503C18Rik|AI317148|AW208826|mKIAA0878	Rho-related BTB domain containing 3	protein-coding	3.76975892673588	4.55291689590414	3.69653887909294	4.91294686152493	2.19367488144718	2.72028648526104	2.77774525226125	2.67766909441995	-2.61818994405913	8.58838150980111e-06	0.000402513286541382
Merged-chr4-133585055-1	chr4	133584955	133585155	+	690.0	f0_balb.idr	TTS (NM_172876)	TTS (NM_172876)	682.0	NM_133884	100210.0	Mm.274001	NM_133884	ENSMUSG00000028848	Gpn2	AI838661|Atpbd1b|R74630	GPN-loop GTPase 2	protein-coding	-2.18308165884198	-2.15547475440471	-2.16382331017202	-2.1706810624505	-2.18114370519566	-2.15366558754311	-2.03057248461154	-2.16945352807143	0.759018020146679	0.829933115115583	1
Merged-chr10-70201045-4	chr10	70200963	70201163	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3601.0	NM_001304739	69563.0	Mm.64672	NM_001304739	ENSMUSG00000019933	Mrln	2310015B20Rik|Linc-RAM|Mln	myoregulin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-118647606-4	chr5	118647529	118647729	+	931.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347445, intron 2 of 30)	intron (NM_001347445, intron 2 of 30)	86910.0	NM_172424	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	5.1276030524318	5.37706441730078	5.75307262761967	5.08715579411936	5.2717250349422	5.57521956210568	5.87980518936239	5.689625495125	0.29669358683571	0.300850290220231	0.802133729347185
Merged-chr17-94305529-2	chr17	94305429	94305629	+	823.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	444490.0	NM_001357136	76781.0	Mm.139146	NM_176917	ENSMUSG00000055660	Mettl4	2410198H06Rik|A730091E08Rik|AV296509|HsT661	methyltransferase like 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19344556-2	chr7	19344456	19344656	+	875.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007948)	promoter-TSS (NM_007948)	-515.0	NM_001127324	13870.0	Mm.280913	NM_007948	ENSMUSG00000003549	Ercc1	Ercc-1	excision repair cross-complementing rodent repair deficiency, complementation group 1	protein-coding	2.17575960543855	2.93365437518964	2.66954921651212	1.26835844477697	2.08181443726137	1.61932348050812	2.77649824440657	1.90691746562549	-0.503569602510039	0.60224793992961	0.973565005745828
Merged-chr19-21052080-3	chr19	21051975	21052175	+	922.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52635.0	NR_126458	75354.0	Mm.243873	NR_126458		4930554I06Rik	-	RIKEN cDNA 4930554I06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-81036257-4	chr3	81036206	81036406	+	998.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019971)	promoter-TSS (NM_019971)	-110.0	NM_019971	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-17892686-2	chr16	17892586	17892786	+	812.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010048)	promoter-TSS (NM_010048)	-958.0	NM_001109750	13356.0	Mm.254515	NM_010048	ENSMUSG00000003166	Dgcr2	9930034O06Rik|DGS-C|Dgsc|Idd|Lan|Sez12|mKIAA0163	DiGeorge syndrome critical region gene 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-114577125-3	chr7	114577021	114577221	+	808.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14149.0	NM_177382	244209.0	Mm.108037	NM_177382	ENSMUSG00000030670	Cyp2r1	-	cytochrome P450, family 2, subfamily r, polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-121034436-6	chr7	121034284	121034484	+	920.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021554)	promoter-TSS (NM_021554)	-61.0	NM_021554	59052.0	Mm.29122	NM_021554	ENSMUSG00000030876	Mettl9	0610012D09Rik|AA517660|Drev|MNCb-5680	methyltransferase like 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-32668228-4	chr9	32668120	32668320	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27822.0	NM_011808	23871.0	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-11461117-4	chr8	11460982	11461182	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011227, intron 1 of 1)	intron (NM_011227, intron 1 of 1)	-16847.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-3896061-2	chr5	3895961	3896161	+	673.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-2128.0	NM_172135	545725.0	Mm.99593	NM_172135	ENSMUSG00000040429	Mterf1a	4931431L11Rik|9230106K09Rik|Mterf|Mterf1|mTERF1b	mitochondrial transcription termination factor 1a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-86760088-2	chr11	86759988	86760188	+	906.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2521.0	NM_001356393	67300.0	Mm.254588	NM_001003908	ENSMUSG00000047126	Cltc	3110065L21Rik|CHC|R74732	clathrin, heavy polypeptide (Hc)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-44617115-4	chr15	44617003	44617203	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-2124.0	NM_001357690	55960.0	Mm.287896	NM_019480	ENSMUSG00000022339	Ebag9	AI835379|Rcas1	estrogen receptor-binding fragment-associated gene 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100856440-4	chr7	100856334	100856534	+	987.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177073, intron 1 of 10)	intron (NM_177073, intron 1 of 10)	6979.0	NM_001358914	320100.0	Mm.40336	NM_177073	ENSMUSG00000008318	Relt	E430021K24Rik|Tnfrsf19l	RELT tumor necrosis factor receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-104110937-4	chr8	104110837	104111037	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009868, intron 1 of 11)	intron (NM_009868, intron 1 of 11)	-5064.0	NR_131138	546096.0	Mm.252264	NR_131138	ENSMUSG00000110053	Gm29682	Gm45664	predicted gene, 29682	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70777394-4	chr11	70777284	70777484	+	952.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12937.0	NM_177565	193043.0	Mm.40966	NM_177565	ENSMUSG00000043602	Zfp3	AI854635|B230309J24|Fnp-1|Zfp-3	zinc finger protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-113800420-4	chr13	113800319	113800519	+	919.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172595, intron 1 of 4)	intron (NM_172595, intron 1 of 4)	5911.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-72232903-2	chr1	72232803	72233003	+	792.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-11090.0	NR_155355	320933.0	Mm.440953	NR_155355		D230017M19Rik	B930094L07Rik	RIKEN cDNA D230017M19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-89319620-2	chr6	89319520	89319720	+	779.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008881, intron 31 of 31)	intron (NM_008881, intron 31 of 31)	-33895.0	NR_131021	75131.0	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	Gm44205	RIKEN cDNA 4930512J16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98951271-2	chr11	98951171	98951371	+	803.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009024, intron 2 of 8)	intron (NM_009024, intron 2 of 8)	-9200.0	NM_001176528	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116145587-2	chr11	116145538	116145738	+	553.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_172571, exon 28 of 31)	exon (NM_172571, exon 28 of 31)	-6770.0	NM_024177	60441.0	Mm.29974	NM_024177	ENSMUSG00000020775	Mrpl38	1110036N21Rik|4733401F03Rik|MRP-L3|R75240|Rpml3	mitochondrial ribosomal protein L38	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-105638728-2	chr7	105638628	105638828	+	829.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029802, intron 3 of 7)	intron (NM_029802, intron 3 of 7)	1688.0	NM_029802	76932.0	Mm.41637	NM_029802	ENSMUSG00000030881	Arfip2	2310002N04Rik|POR|Por1	ADP-ribosylation factor interacting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118748547-3	chr9	118748424	118748624	+	804.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 1 of 13)	intron (NM_001113514, intron 1 of 13)	36832.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0.654333576422092	0.775983119921765	0.364926983026354	0.357452786530866	0.787505618349249	1.48517812375826	0.574425067279821	0.358764072877162	1.7452599099527	0.30595692095263	1
Merged-chr16-31081407-4	chr16	31081311	31081511	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198626)	promoter-TSS (NM_198626)	21.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	4.86940388423633	4.72839969675137	3.9807503033765	4.13629499830675	4.87484850573425	5.51781755100494	4.56527178022362	3.54568457081643	0.384586357299973	0.397762267121405	0.883987098219797
Merged-chr12-102697230-2	chr12	102697130	102697330	+	821.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172584, intron 1 of 9)	intron (NM_172584, intron 1 of 9)	7639.0	NM_172584	217837.0	Mm.482192	NM_172584	ENSMUSG00000057963	Itpk1	BC031182	inositol 1,3,4-triphosphate 5/6 kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-119873064-8	chr2	119872881	119873081	+	976.2604369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-24247.0	NM_001164274	29808.0	Mm.87532	NM_013720	ENSMUSG00000033943	Mga	AV312082|C130042M01Rik|C80739|D030062C11Rik|Mad5	MAX gene associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-77492567-2	chr11	77492467	77492667	+	622.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001004144)	promoter-TSS (NM_001004144)	-845.0	NM_001004144	216963.0	Mm.290182	NM_001004144	ENSMUSG00000011877	Git1	Cat-1|p95Cat	G protein-coupled receptor kinase-interactor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-118569657-1	chr1	118569557	118569757	+	695.0	f0_balb.idr	intron (NM_001359330, intron 33 of 39)	ORR1D2|LTR|ERVL-MaLR	-58288.0	NM_023755	81879.0	Mm.24621	NM_023755	ENSMUSG00000026380	Tfcp2l1	1810030F05Rik|4932442M07Rik|AA575098|Cp2l1|Crtr-1|D930018N21Rik|LBP-9|Tcfcp2l1	transcription factor CP2-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-27233028-2	chr3	27232928	27233128	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 3 of 4)	B4|SINE|B4	50024.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31478443-2	chr14	31478343	31478543	+	779.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001359850)	TTS (NM_001359850)	16315.0	NM_001359850	67011.0	Mm.291731	NM_025907	ENSMUSG00000021891	Mettl6	1600013P15Rik|AI467521|AU020711	methyltransferase like 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101642091-4	chr11	101642031	101642231	+	987.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14182.0	NM_025654	66599.0	Mm.41449	NM_025654	ENSMUSG00000010362	Rdm1	2410008M22Rik|AW212028|Rad52b	RAD52 motif 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-79270430-2	chr7	79270330	79270530	+	671.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-2836.0	NM_018811	54608.0	Mm.365490	NM_018811	ENSMUSG00000039202	Abhd2	2210009N18Rik|LABH2|Labh-2	abhydrolase domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-105242649-3	chr4	105242565	105242765	+	924.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	85318.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	1.74243731984726	1.69619982617342	0.848640896416397	1.57835600792948	1.28276412883879	0.866889436491367	0.851957914462003	1.58759583605236	-1.19184102098169	0.389494956734264	0.878633835089816
Merged-chr1-182960266-4	chr1	182960163	182960363	+	984.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016928, intron 1 of 3)	intron (NM_016928, intron 1 of 3)	5475.0	NM_016928	53791.0	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-47595449-4	chr9	47595355	47595555	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	65103.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	2.63710100124087	4.6018282878797	4.59033720522058	4.10112173798657	2.79929135484212	3.83351937426829	4.18820674742902	4.22564229539192	-0.414306004340168	0.467224604957857	0.923620520147907
Merged-chr9-106242947-4	chr9	106242845	106243045	+	974.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020559, intron 3 of 10)	intron (NM_020559, intron 3 of 10)	4785.0	NM_001291835	11655.0	Mm.290578	NM_020559	ENSMUSG00000032786	Alas1	ALAS|ALAS-N|Alas-1|Alas-h	aminolevulinic acid synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59665620-4	chr15	59665570	59665770	+	877.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17016.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-148375640-4	chr2	148375609	148375809	+	630.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19668.0	NM_009219	20608.0	Mm.35324	NM_009219	ENSMUSG00000037014	Sstr4	Smstr4|sst4	somatostatin receptor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-148662278-3	chr4	148662082	148662282	+	701.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085505, intron 5 of 10)	intron (NM_001085505, intron 5 of 10)	18865.0	NM_001085505	230909.0	Mm.332067	NM_001085505	ENSMUSG00000070577	Gm572	b2b1167Clo	predicted gene 572	protein-coding	3.04570510911106	2.38547853978735	2.8598037394339	2.69323397134362	2.48753681636981	2.54307010361942	1.99431384256284	2.25646461551107	-0.926294053448554	0.221751280223215	0.713546366664184
Merged-chr1-152569867-1	chr1	152569767	152569967	+	554.0	f1_c57bl6.idr	intron (NM_016846, intron 4 of 17)	L2|LINE|L2	55350.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-53374863-2	chr10	53374763	53374963	+	986.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_001204983, intron 1 of 12)	B1_Mur1|SINE|Alu	4988.0	NM_001204983	100038725.0	Mm.441403	NM_001204983	ENSMUSG00000038594	Cep85l	Gm9766	centrosomal protein 85-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-138297933-4	chr1	138297817	138298017	+	811.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	24179.0	NM_177397	338375.0	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24689846-2	chr17	24689790	24689990	+	626.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011522)	promoter-TSS (NM_011522)	59.0	NM_011522	20974.0	Mm.26032	NM_011522	ENSMUSG00000007021	Syngr3	-	synaptogyrin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-30009800-3	chr16	30009704	30009904	+	965.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033631, intron 1 of 2)	intron (NR_033631, intron 1 of 2)	1137.0	NR_033631	100043102.0	Mm.30797	NR_033631	ENSMUSG00000097184	4632428C04Rik	Gm4231	RIKEN cDNA 4632428C04 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-143112565-3	chr5	143112489	143112689	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080561, intron 1 of 16)	CpG	431.0	NM_207110	108086.0	Mm.381440	NM_080561	ENSMUSG00000045078	Rnf216	2810055G22Rik|AI647468|AU019462|C86502|F830018F18Rik|TRIAD3|UIP83|Ubce7ip1	ring finger protein 216	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-8871106-4	chr13	8871001	8871201	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172445)	promoter-TSS (NM_172445)	-57.0	NM_172445	207615.0	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-22803998-2	chr2	22803898	22804098	+	586.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019456, intron 1 of 13)	PB1D10|SINE|Alu	29671.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-13934980-2	chr11	13934880	13935080	+	625.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	244061.0	NR_131011	75280.0	Mm.108492	NR_131011	ENSMUSG00000085452	4930554G24Rik	-	RIKEN cDNA 4930554G24 gene	ncRNA	-1.8418762459921	-1.8125357239735	-1.82140854000656	-1.82869693527674	-1.56059678980999	-1.8106129477253	-1.81939992894326	-1.82739231600805	1.3620893379502	0.699511506488145	1
Merged-chr4-129285947-2	chr4	129285847	129286047	+	669.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1674.0	NM_023485	68828.0	Mm.132243	NM_023485	ENSMUSG00000001333	Sync	1110057H03Rik|SNIP4	syncoilin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-80183443-1	chr11	80183343	80183543	+	1000.0	f1_balb.idr	promoter-TSS (NM_028019)	promoter-TSS (NM_028019)	-429.0	NM_028019	71956.0	Mm.22985	NM_028019	ENSMUSG00000020707	Rnf135	0610037N03Rik|2410006N06Rik	ring finger protein 135	protein-coding	3.34145184991318	2.5764271503976	1.90351878800382	3.17019660443074	2.95457448120422	3.47563214959966	3.4378627412005	2.81316301009807	0.556855424427732	0.421639396620661	0.900322118218157
Merged-chr2-45233486-2	chr2	45233386	45233586	+	676.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-116044.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-31200198-9	chr16	31200047	31200247	+	968.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030138, intron 1 of 22)	intron (NM_030138, intron 1 of 22)	1091.0	NM_030138	78618.0	Mm.274646	NM_030138	ENSMUSG00000049076	Acap2	4832442G16|9530039J15Rik|CNT-B2|Centb2|mKIAA0041	ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-45857845-4	chr5	45857708	45857908	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163073)	promoter-TSS (NM_001163073)	-268.0	NM_001359873	209707.0	Mm.71498	NM_172153	ENSMUSG00000015882	Lcorl	Mlr1	ligand dependent nuclear receptor corepressor-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-10495589-2	chr16	10495489	10495689	+	831.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001302619, intron 2 of 19)	intron (NM_001302619, intron 2 of 19)	5808.0	NM_001243761	12265.0	Mm.249560	NM_007575	ENSMUSG00000022504	Ciita	C2ta|EG669998|Gm9475|Mhc2ta	class II transactivator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-10489762-4	chr16	10489635	10489835	+	819.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001243761)	promoter-TSS (NM_001243761)	-46.0	NM_001243761	12265.0	Mm.249560	NM_007575	ENSMUSG00000022504	Ciita	C2ta|EG669998|Gm9475|Mhc2ta	class II transactivator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-83723636-2	chr2	83723536	83723736	+	614.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008402)	promoter-TSS (NM_008402)	-761.0	NM_008402	16410.0	Mm.227	NM_008402	ENSMUSG00000027087	Itgav	1110004F14Rik|2610028E01Rik|CD51|D430040G12Rik	integrin alpha V	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-118491192-1	chr7	118491092	118491292	+	1000.0	f1_balb.idr	exon (NM_001033380, exon 1 of 1)	exon (NM_001033380, exon 1 of 1)	783.0	NM_001033380	319622.0	Mm.323386	NM_001033380	ENSMUSG00000095115	Itpripl2	C130081G24|E030018N11Rik	inositol 1,4,5-triphosphate receptor interacting protein-like 2	protein-coding	2.06883717507684	1.63793692896805	2.46302154253738	1.74706444021592	1.96661168582711	2.667782991308	2.12739167006851	2.73925079985845	0.943394405012145	0.289606193827852	0.7950309994885
Merged-chr5-7995485-2	chr5	7995385	7995585	+	839.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	35013.0	NM_054098	117167.0	Mm.31403	NM_054098	ENSMUSG00000012428	Steap4	1110021O17Rik|AI481214|Tiarp|Tnfaip9	STEAP family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-50033022-4	chr18	50032920	50033120	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360935, intron 1 of 1)	intron (NM_001360935, intron 1 of 1)	2036.0	NM_001360935	106869.0	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	4.69764634508159	4.22879881853062	3.89631649554452	2.45425125960684	4.73115900061798	4.25849489491559	3.99547810227099	2.47004241240292	0.0609911791655942	0.921356533832281	0.998431161219273
Merged-chr8-120586671-2	chr8	120586571	120586771	+	546.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178856, intron 2 of 4)	intron (NM_178856, intron 2 of 4)	2404.0	NM_178856	272551.0	Mm.275910	NM_178856	ENSMUSG00000031821	Gins2	2210013I18Rik|4833427B12Rik|AI323585|Pfs2	GINS complex subunit 2 (Psf2 homolog)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-23167922-2	chr8	23167822	23168022	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14651.0	NM_029002	74561.0	Mm.290028	NM_029002	ENSMUSG00000063672	Nkx6-3	9130417I07Rik|Nkx6.3	NK6 homeobox 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80245860-4	chr10	80245774	80245974	+	962.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_023431)	TTS (NM_023431)	-3578.0	NM_029272	75406.0	Mm.28712	NM_029272	ENSMUSG00000020153	Ndufs7	1010001M04Rik	NADH dehydrogenase (ubiquinone) Fe-S protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-14784432-6	chr9	14784255	14784455	+	940.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310728)	promoter-TSS (NM_001310728)	218.0	NM_019683	56503.0	Mm.272618	NM_019683	ENSMUSG00000031931	Ankrd49	AW060934|C86108|Gbif	ankyrin repeat domain 49	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-52722798-4	chr1	52722709	52722909	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357464, intron 1 of 7)	intron (NM_001357464, intron 1 of 7)	4509.0	NM_178081	98682.0	Mm.491173	NM_133829	ENSMUSG00000041439	Mfsd6	2210010L05Rik|9630025I22Rik|AI836200|AW212394|MMR2	major facilitator superfamily domain containing 6	protein-coding	5.299161382303	4.86860844551402	5.3385648070519	5.04160012032881	5.28696910003734	6.35797853570605	5.27708486020034	5.6100417545955	0.624922683693205	0.0502302449619706	0.326808963024488
Merged-chr3-142490660-4	chr3	142490562	142490762	+	918.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	-6272.0	NM_153564	229898.0	Mm.459245	NM_153564	ENSMUSG00000105504	Gbp5	5330409J06Rik|Gbp5a	guanylate binding protein 5	protein-coding	4.28922749311953	4.87571121073346	4.81321154328605	4.18418117641359	5.06782976473173	5.23083833357064	5.27757911459469	4.62480734347772	0.61445120441385	0.0823782298457007	0.439277334083874
Merged-chr4-9124306-2	chr4	9124206	9124406	+	939.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A0|LTR|ERVL-MaLR	-144987.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-50110759-3	chr6	50110656	50110856	+	996.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361247)	promoter-TSS (NM_001361247)	-104.0	NM_001361247	56524.0	Mm.41288	NM_008016	ENSMUSG00000038388	Mpp6	P55t|Pals2	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	protein-coding	0.990124474379093	1.2557292193342	0.913056832635846	1.28459619816089	1.11637798828133	1.50786557127737	0.918973314130304	0.716912354463307	-0.0701347950576096	0.959106769150144	0.998431161219273
Merged-chr11-109369366-4	chr11	109369252	109369452	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010303, intron 2 of 3)	intron (NM_010303, intron 2 of 3)	-5698.0	NR_038097	100036768.0	Mm.467767	NR_038097	ENSMUSG00000056687	Gm11696	-	predicted gene 11696	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-177713825-4	chr1	177713725	177713925	+	867.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M5|LINE|L1	-15989.0	NM_027077	69428.0	Mm.84467	NM_027077	ENSMUSG00000015962	1700016C15Rik	-	RIKEN cDNA 1700016C15 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-58499365-2	chr16	58499265	58499465	+	904.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357433, intron 2 of 10)	intron (NM_001357433, intron 2 of 10)	24061.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-121797849-4	chr14	121797746	121797946	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134074)	promoter-TSS (NM_134074)	-112.0	NM_134074	105445.0	Mm.378591	NM_134074	ENSMUSG00000025558	Dock9	AA959601|AW538057|B230309H04Rik|D14Wsu89e|Zizimin1|mKIAA1058	dedicator of cytokinesis 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-181327236-1	chr1	181327136	181327336	+	547.0	f1_balb.idr	Intergenic	MTD|LTR|ERVL-MaLR	-25392.0	NM_001160212	72978.0	Mm.338083	NM_028408	ENSMUSG00000026514	Cnih3	2900075G08Rik|CNIH-3	cornichon family AMPA receptor auxiliary protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98660664-4	chr11	98660552	98660752	+	999.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3699.0	NM_021347	57911.0	Mm.458085	NM_021347	ENSMUSG00000017204	Gsdma	BB149167|Gsdm|Gsdm1|Gsdma1|H312E	gasdermin A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124719157-2	chr6	124719057	124719257	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029792)	promoter-TSS (NR_029792)	-767.0	NR_029792	723944.0		NR_029792	ENSMUSG00000065462	Mir200c	Mirn200c|mir-200c	microRNA 200c	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-6217149-4	chr6	6217045	6217245	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015829)	promoter-TSS (NM_015829)	28.0	NM_015829	50799.0	Mm.24513	NM_015829	ENSMUSG00000015112	Slc25a13	AI785475|Ctrn	solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-35303346-4	chr12	35303257	35303457	+	900.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-108460.0	NR_030449	751520.0		NR_030449	ENSMUSG00000076253	Mir680-3	Mirn680-3	microRNA 680-3	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-60884203-4	chr2	60884112	60884312	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020296, intron 1 of 13)	MLT1M|LTR|ERVL-MaLR	-2774.0	NM_001141931	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-87324257-1	chr17	87324157	87324357	+	970.0	f1_balb.idr	intron (NM_028639, intron 8 of 19)	intron (NM_028639, intron 8 of 19)	41371.0	NM_028639	225049.0	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding	-0.185983351356936	0.176427550462164	-0.176544876874592	0.237654926173181	-0.185108358272475	-0.170894967842719	-0.175528782718959	0.446395836703022	-0.0912556388366093	0.969529880264964	1
Merged-chr5-115853203-2	chr5	115853103	115853303	+	685.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007708, intron 2 of 46)	ORR1F|LTR|ERVL-MaLR	7547.0	NM_007708	12704.0	Mm.8321	NM_007708	ENSMUSG00000029516	Cit	C030025P15Rik|CRIK|CRIK-SK|Cit-k	citron	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126569578-3	chr8	126569497	126569697	+	929.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23839.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-62068186-4	chr18	62068095	62068295	+	777.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR17|LTR|ERVK	111786.0	NM_007420	11555.0	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-23749799-4	chr18	23749698	23749898	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_126066)	TTS (NR_126066)	2507.0	NR_126066	100502834.0	Mm.213614	NR_126066	ENSMUSG00000086287	Gm15972	-	predicted gene 15972	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-104066464-4	chr12	104066342	104066542	+	996.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-11517.0	NR_002861	321018.0	Mm.297023	NR_002861		Serpina4-ps1	KALps|Klst	serine (or cysteine) peptidase inhibitor, clade A, member 4, pseudogene 1	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-12921250-1	chr10	12921150	12921350	+	790.0	f1_c57bl6.idr	intron (NR_038028, intron 2 of 2)	intron (NR_038028, intron 2 of 2)	1877.0	NR_038027	320273.0	Mm.417706	NR_038027	ENSMUSG00000097378	B230208H11Rik	-	RIKEN cDNA B230208H11 gene	ncRNA	0.709986896507719	0.423187449090268	0.412587719601798	1.48123429327714	0.718165596380711	0.425554352452084	0.414939850762304	1.33339648419739	-0.264710505498084	0.880325770754327	0.998431161219273
Merged-chr2-118053763-1	chr2	118053663	118053863	+	819.0	f0_balb.idr	intron (NR_126479, intron 4 of 9)	LTR41B|LTR|ERVL	57439.0	NR_126479	329496.0	Mm.235844	NR_126479	ENSMUSG00000087203	Gm13986	C230060E24	predicted gene 13986	ncRNA	2.02391451289572	2.84848664547429	1.39238392133381	2.38208520942068	2.96562657091931	2.67126779945801	2.21214721089961	2.14397970768818	0.593376878685734	0.502828849713079	0.939633458693796
Merged-chr16-14352275-4	chr16	14352188	14352388	+	831.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9270.0	NM_008576	17250.0	Mm.196634	NM_008576	ENSMUSG00000023088	Abcc1	Abcc1a|Abcc1b|MRP|Mdrap|Mrp1	ATP-binding cassette, sub-family C (CFTR/MRP), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-102074437-3	chr15	102074332	102074532	+	929.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145625, intron 1 of 14)	CpG	659.0	NM_145625	75705.0	Mm.290022	NM_145625	ENSMUSG00000058655	Eif4b	2310046H11Rik|AL024095|C85189|Eif4a2	eukaryotic translation initiation factor 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-9435952-4	chr15	9435823	9436023	+	586.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029341)	promoter-TSS (NM_029341)	-105.0	NM_029341	75568.0	Mm.82143	NM_029341	ENSMUSG00000039676	Capsl	1700028N11Rik|AW125205	calcyphosine-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-68242263-4	chr2	68242190	68242390	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016866, intron 16 of 17)	intron (NM_016866, intron 16 of 17)	137618.0	NM_020283	26877.0	Mm.226435	NM_020283	ENSMUSG00000034780	B3galt1	beta3Gal-T1	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-50912144-2	chr5	50912044	50912244	+	714.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR10B2|LTR|ERVK	641777.0	NR_027710	19017.0	Mm.259072	NM_008904	ENSMUSG00000029167	Ppargc1a	A830037N07Rik|Gm11133|PGC-1|PPARGC-1-alpha|Pgc-1alpha|Pgc1|Pgco1|Ppargc1	peroxisome proliferative activated receptor, gamma, coactivator 1 alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-17989286-4	chr10	17989198	17989398	+	976.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33792.0	NM_001359560	73112.0	Mm.276041	NM_028440	ENSMUSG00000078453	Abracl	1700028I04Rik|3110003A17Rik	ABRA C-terminal like	protein-coding	2.6463071974085	2.53940336417892	2.34489700352165	1.88868113206551	1.80878333478295	2.75317280603855	1.31611331887507	1.89823290820148	-0.757461260129041	0.421999391077173	0.900322118218157
Merged-chr11-77981857-4	chr11	77981744	77981944	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_174852)	promoter-TSS (NM_174852)	-972.0	NM_174852	268448.0	Mm.274329	NM_174852	ENSMUSG00000037791	Phf12	2410142K10Rik|F630045O13|PF1|mKIAA1523	PHD finger protein 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-114292457-2	chr6	114292357	114292557	+	682.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178703, intron 1 of 15)	intron (NM_178703, intron 1 of 15)	9822.0	NM_178703	232333.0	Mm.5260	NM_178703	ENSMUSG00000030310	Slc6a1	A730043E01|GABATHG|GABATR|GAT-1|Gabt|Gabt1|Gat1|XT-1|Xtrp1	solute carrier family 6 (neurotransmitter transporter, GABA), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-100656500-4	chr5	100656380	100656580	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027978, intron 6 of 6)	intron (NM_027978, intron 6 of 6)	17776.0	NM_027978	71883.0	Mm.260661	NM_027978	ENSMUSG00000029319	Coq2	2310002F18Rik|PHB:PPT	coenzyme Q2 4-hydroxybenzoate polyprenyltransferase	protein-coding	5.56204527728463	5.36530501640786	6.05082378517874	5.40942158434352	5.18185073696666	5.53197034811957	4.64588493358189	5.29156214610002	-0.491938832318849	0.104596083568624	0.504398637723613
Merged-chr5-43921817-3	chr5	43921788	43921988	+	664.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17B|LTR|ERVK	53079.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	1.43352869161719	1.18372039232044	2.53552631761414	1.49532638451979	1.44281805131862	1.90049585414919	2.39120989791471	1.33912734450466	0.0844620232868845	0.941518747057061	0.998431161219273
Merged-chr4-3683067-4	chr4	3682971	3683171	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 1 of 12)	intron (NM_001111096, intron 1 of 12)	4950.0	NM_010747	17096.0	Mm.317331	NM_010747	ENSMUSG00000042228	Lyn	AA407514|Hck-2|p53Lyn|p56Lyn	LYN proto-oncogene, Src family tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-174077349-4	chr2	174077233	174077433	+	941.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001102423, intron 1 of 7)	intron (NM_001102423, intron 1 of 7)	282.0	NM_001102423	228960.0	Mm.277977	NM_172675	ENSMUSG00000027522	Stx16	4930401D03|5430410K23Rik|6330500A18Rik|AI648908|AW553605|Syn16	syntaxin 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-80846386-3	chr12	80846251	80846451	+	827.0476070000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178682, intron 2 of 5)	intron (NM_178682, intron 2 of 5)	55819.0	NM_001242419	217684.0	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191244544-3	chr1	191244463	191244663	+	805.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20109.0	NR_151547	100504360.0	Mm.16927	NM_001033188		D730003I15Rik	AU020850	RIKEN cDNA D730003I15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-12083436-4	chr4	12083352	12083552	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110955, intron 2 of 28)	RodERV21-int|LTR|ERV1	4505.0	NM_177861	329795.0	Mm.475125	NM_177861	ENSMUSG00000049488	Tmem67	5330408M12Rik|B230117O07|b2b1163.1Clo|b2b1291.1Clo	transmembrane protein 67	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-70683957-3	chr17	70683870	70684070	+	758.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360665, intron 9 of 14)	intron (NM_001360665, intron 9 of 14)	122223.0	NM_001128181	224997.0	Mm.311840	NM_027712	ENSMUSG00000003279	Dlgap1	4933422O14Rik|9630002F18|AI845682|AI848168|BB075781|D17Bwg0511e|GKAP/SAPAP|GKPA/SAPAP|Gkap|Sapap1|mKIAA4162	DLG associated protein 1	protein-coding	3.15603178800305	4.38098050682387	3.34447477948585	2.51121934717339	3.48312648105921	4.58321849037434	2.22954585684105	3.2634357559617	0.181667458226441	0.791627554906153	0.998431161219273
Merged-chr11-102456056-6	chr11	102455969	102456169	+	817.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010575, intron 27 of 29)	CpG-2677	-8406.0	NM_199200	217219.0	Mm.259924	NM_199200	ENSMUSG00000034685	Fam171a2	-	family with sequence similarity 171, member A2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-91687154-1	chr6	91687054	91687254	+	551.0	f1_c57bl6.idr	intron (NM_009320, intron 1 of 14)	B1_Mus1|SINE|Alu	3087.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-79173491-4	chr3	79173416	79173616	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27641.0	NM_001099624	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	7.47278050964622	7.4431973804799	8.40193532465037	7.3879823735644	7.35079088811809	7.86520552857877	8.32668651727253	7.71988290742141	0.117321133686358	0.723172401172236	0.998431161219273
Merged-chr6-148705895-3	chr6	148705806	148706006	+	665.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-27906.0	NR_131024	75831.0	Mm.159595	NR_131024	ENSMUSG00000084909	4930528G23Rik	-	RIKEN cDNA 4930528G23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-105745038-4	chr7	105744924	105745124	+	896.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020024)	promoter-TSS (NM_020024)	-686.0	NM_020024	24075.0	Mm.274846	NM_020024	ENSMUSG00000043866	Taf10	30kDa|AU041226|TAFII30|Taf2h	TATA-box binding protein associated factor 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118211989-4	chr11	118211907	118212107	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	735.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-66257428-2	chr2	66257328	66257528	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290669)	promoter-TSS (NM_001290669)	-811.0	NM_001290669	73668.0	Mm.250868	NM_001047604	ENSMUSG00000034848	Ttc21b	2410066K11Rik|Thm1|aln|mKIAA1992	tetratricopeptide repeat domain 21B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-104780094-3	chr3	104779979	104780179	+	847.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027982)	promoter-TSS (NM_027982)	-977.0	NM_027982	71887.0	Mm.379204	NM_027982	ENSMUSG00000002228	Ppm1j	2310008J22Rik|PP2Czeta|Ppp2cz	protein phosphatase 1J	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-9834384-4	chr13	9834270	9834470	+	911.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_T|LINE|L1	-69049.0	NM_144516	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-53376961-4	chr9	53376866	53377066	+	748.049988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_176846, exon 6 of 6)	exon (NM_176846, exon 6 of 6)	-7057.0	NM_212445	68304.0	Mm.427519	NM_212445	ENSMUSG00000034487	Kdelc2	2010004J24Rik|4833410J10Rik|AW549401	KDEL (Lys-Asp-Glu-Leu) containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-130783120-4	chr4	130783012	130783212	+	998.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9425.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-70839232-4	chr9	70839128	70839328	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001324473, intron 1 of 8)	intron (NM_001324473, intron 1 of 8)	95580.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-51981890-4	chr2	51981803	51982003	+	922.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8695.0	NM_001141948	64685.0	Mm.7491	NM_019401	ENSMUSG00000026946	Nmi	-	N-myc (and STAT) interactor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-53310486-4	chr19	53310383	53310583	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001008542)	promoter-TSS (NM_001008542)	-23.0	NM_001008542	17859.0	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-8189518-2	chr14	8189418	8189618	+	617.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER34A1|LTR|ERV1	-16526.0	NM_024221	68263.0	Mm.301527	NM_024221	ENSMUSG00000021748	Pdhb	2610103L06Rik|AL024199|C81408	pyruvate dehydrogenase (lipoamide) beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-106428854-4	chr9	106428791	106428991	+	911.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001324534)	promoter-TSS (NM_001324534)	-520.0	NM_001324533	19944.0	Mm.288696	NM_009082	ENSMUSG00000048758	Rpl29	Rpl43	ribosomal protein L29	protein-coding	5.09537719137551	4.60282068883391	5.65891246877017	5.91047377192931	4.72615791499215	4.44915867361868	4.79408817393534	4.82732600718751	-0.828403999338109	0.0193886788714069	0.175997555130228
Merged-chr8-81341790-3	chr8	81341655	81341855	+	704.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001297591)	promoter-TSS (NM_001297591)	-807.0	NM_001024617	234515.0	Mm.324468	NM_001024617	ENSMUSG00000037940	Inpp4b	E130107I17Rik	inositol polyphosphate-4-phosphatase, type II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44581613-3	chr9	44581528	44581728	+	936.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23264.0	NM_001110826	13209.0	Mm.267061	NM_007841	ENSMUSG00000032097	Ddx6	1110001P04Rik|C430015D01Rik|E230023J21Rik|HLR2|mRCK/P54|p54|rck	DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	protein-coding	-0.993967720031125	-1.23039527321127	-1.0802916623834	-1.24895049904828	-1.25634882241825	-1.22818766965669	-1.07798550901415	-1.24745262214366	-1.12290967088118	0.718431200100952	1
Merged-chr10-12955999-3	chr10	12955898	12956098	+	797.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029075, intron 1 of 2)	intron (NM_029075, intron 1 of 2)	8261.0	NM_029075	74732.0	Mm.248648	NM_029075	ENSMUSG00000039232	Stx11	5830405C08Rik	syntaxin 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-53519296-2	chr11	53519196	53519396	+	889.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252332)	promoter-TSS (NM_001252332)	-440.0	NM_033144	20362.0	Mm.274399	NM_033144	ENSMUSG00000018398	Sept8	AW046166|Sepl	septin 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-98283295-4	chr12	98283192	98283392	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MamGypLTR1c|LTR|Gypsy	14657.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-90445626-3	chr3	90445525	90445725	+	661.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-11989.0	NM_178876	229543.0	Mm.268564	NM_145540	ENSMUSG00000027933	Ints3	C77668	integrator complex subunit 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6331867-4	chr19	6331758	6331958	+	844.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3121.0	NM_001168488	17283.0	Mm.12917	NM_008583	ENSMUSG00000024947	Men1	AW045611	multiple endocrine neoplasia 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102643608-2	chr12	102643508	102643708	+	872.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172584, intron 2 of 9)	intron (NM_172584, intron 2 of 9)	41412.0	NR_035457	100316812.0		NR_035457	ENSMUSG00000089324	Mir1936	mir-1936|mmu-mir-1936	microRNA 1936	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-61714766-3	chr11	61714666	61714866	+	894.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033227, intron 6 of 15)	intron (NM_001033227, intron 6 of 15)	6033.0	NM_001033227	109342.0	Mm.441070	NM_001033227	ENSMUSG00000042371	Slc5a10	C330021F16Rik|SGLT5	solute carrier family 5 (sodium/glucose cotransporter), member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140831458-2	chr5	140831358	140831558	+	853.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1027.0	NM_010302	14673.0	Mm.370185	NM_010302	ENSMUSG00000000149	Gna12	AI414047|AI504261|Galpha12	guanine nucleotide binding protein, alpha 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-119947013-2	chr6	119946913	119947113	+	908.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_198703, intron 19 of 27)	B2_Mm2|SINE|B2	44315.0	NM_001166383	19365.0	Mm.149	NM_011236	ENSMUSG00000030166	Rad52	Rad52yh	RAD52 homolog, DNA repair protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-160744272-2	chr2	160744172	160744372	+	557.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021280, intron 2 of 33)	intron (NM_021280, intron 2 of 33)	12962.0	NM_021280	18803.0	Mm.44463	NM_021280	ENSMUSG00000016933	Plcg1	AI894140|Cded|Plc-1|Plc-gamma1|Plcg-1	phospholipase C, gamma 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-61682551-3	chr9	61682448	61682648	+	877.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	231962.0	NM_018853	56040.0	Mm.3158	NM_018853	ENSMUSG00000007892	Rplp1	2410042H16Rik|Arpp1|C430017H15Rik	ribosomal protein, large, P1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-8992920-2	chr3	8992820	8993020	+	947.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009412, intron 1 of 5)	MLT1F1|LTR|ERVL-MaLR	11284.0	NM_001357073	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-69822911-3	chr2	69822784	69822984	+	772.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360394)	promoter-TSS (NM_001360394)	43.0	NM_001360394	277396.0	Mm.138073	NM_177784	ENSMUSG00000042155	Klhl23	C130068N17Rik	kelch-like 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-55697130-2	chr16	55697030	55697230	+	567.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	125008.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-13659105-4	chr1	13658999	13659199	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145381, intron 1 of 6)	intron (NM_145381, intron 1 of 6)	1410.0	NM_145381	212442.0	Mm.89572	NM_145381	ENSMUSG00000025937	Lactb2	Cgi-83|E430032H21Rik	lactamase, beta 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-86144044-2	chr3	86143944	86144144	+	556.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-1376.0	NM_016959	20091.0	Mm.391785	NM_016959	ENSMUSG00000028081	Rps3a1	Rps3a	ribosomal protein S3A1	protein-coding	0.448450992205049	0.130399754596088	0.281996362530614	0.391285135285183	0.456274008263383	0.131423807978965	0.286301403389152	0.395470210191504	0.0371137065356684	0.98384524970697	1
Merged-chr18-36524532-1	chr18	36524432	36524632	+	610.0	f1_balb.idr	Intergenic	B1_Mur3|SINE|Alu	-3620.0	NM_172830	240215.0	Mm.135463	NM_172830	ENSMUSG00000024485	Slc4a9	AE4|D630003B07|D630024F24Rik	solute carrier family 4, sodium bicarbonate cotransporter, member 9	protein-coding	0.960454341546375	0.305186063846685	0.64352931985808	0.291493680432418	0.282986452955859	1.07517603341761	0.65157508315004	0.2925409694068	0.219925943078186	0.907425045430032	1
Merged-chr6-116124270-3	chr6	116124168	116124368	+	930.1333619999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177412, intron 3 of 5)	MT2B2|LTR|ERVL	69106.0	NM_177412	330401.0	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166555821-2	chr2	166555721	166555921	+	880.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8701.0	NR_152154	433503.0	Mm.491336	NR_152154		Gm29679	-	predicted gene, 29679	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-8760696-4	chr10	8760529	8760729	+	991.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 8 of 19)	intron (NM_175155, intron 8 of 19)	125441.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	1.17541910909868	0.536382591108082	1.21878964888005	0.521208006277684	0.795890257571263	0.910359783779213	0.529720652144663	0.96905675353572	-0.532114424121458	0.745376268388262	1
Merged-chr3-84155803-4	chr3	84155701	84155901	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029797)	promoter-TSS (NM_029797)	-15.0	NM_029797	76915.0	Mm.274829	NM_029797	ENSMUSG00000033752	Mnd1	2610034E18Rik|AI591601|Gaj	meiotic nuclear divisions 1	protein-coding	7.29604177976531	6.38004306578069	7.22287151404505	6.74081380769081	6.82526641120621	7.08239479526076	6.92242929254942	7.02092892220897	-0.000291162165513589	0.998873263094312	0.99948416078663
Merged-chr2-27424337-2	chr2	27424237	27424437	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009500, intron 1 of 27)	intron (NM_009500, intron 1 of 27)	3271.0	NR_133905	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35749994-4	chr17	35749899	35750099	+	924.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22451.0	NR_045459	74601.0	Mm.410840	NR_045459	ENSMUSG00000092171	4833427F10Rik	-	RIKEN cDNA 4833427F10 gene	ncRNA	2.66621367209984	3.17269774915144	2.14570480393153	3.12595068867658	2.27319094940058	3.27489466254913	1.46971980913698	2.39339489549478	-0.618997776014653	0.458092632935258	0.919570891419578
Merged-chr10-81607356-2	chr10	81607256	81607456	+	984.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_030677, intron 2 of 2)	ORR1B1-int|LTR|ERVL-MaLR	1048.0	NR_030677	268319.0	Mm.131825	NM_001033363	ENSMUSG00000074862	BC025920	-	zinc finger protein pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-29362555-2	chr19	29362455	29362655	+	735.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026362)	promoter-TSS (NM_026362)	-684.0	NM_026362	67759.0	Mm.275511	NM_026362	ENSMUSG00000016495	Plgrkt	1110007H22Rik|5033414D02Rik|AI852040|Plg-R(KT)|Plg-RKT	plasminogen receptor, C-terminal lysine transmembrane protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116683808-5	chr11	116683624	116683824	+	831.299988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009180, intron 5 of 8)	B1_Mur1|SINE|Alu	9127.0	NR_028570	100216538.0		NR_028570	ENSMUSG00000065094	Snord1a	snR38	small nucleolar RNA, C/D box 1A	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-120102893-1	chr7	120102793	120102993	+	647.0	f0_c57.idr	intron (NM_145586, intron 1 of 4)	intron (NM_145586, intron 1 of 4)	467.0	NM_145586	233806.0	Mm.257952	NM_145586	ENSMUSG00000030917	Tmem159	8430420C20Rik	transmembrane protein 159	protein-coding	0.734604698527224	0.48145700539669	0.473185714106266	0.908114424712412	0.741851227235753	0.483315687839475	1.1773947643763	1.12620713080771	1.38640647288724	0.404835291561089	1
Merged-chr7-3275998-4	chr7	3275876	3276076	+	976.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13062.0	NM_001093764	50918.0	Mm.29874	NM_016969	ENSMUSG00000068566	Myadm	D7Wsu62e	myeloid-associated differentiation marker	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-77737369-2	chr11	77737269	77737469	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12076.0	NM_009965	12957.0	Mm.22830	NM_009965	ENSMUSG00000000724	Cryba1	BA3/A1|Cryb	crystallin, beta A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64718997-4	chr5	64718888	64719088	+	875.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-84535.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	0.988171858054763	2.36434053073494	1.62408017454425	1.71249036921265	1.63490224336478	1.97679117516803	1.77981487327366	1.02077603578002	-0.356863430431626	0.764162067340567	0.998431161219273
Merged-chr19-12474408-2	chr19	12474309	12474509	+	614.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172442, intron 7 of 8)	MLT1A1|LTR|ERVL-MaLR	13630.0	NM_010821	17476.0	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	-0.831139212782156	-0.820888727141004	-0.824743134031066	-0.193579325930709	-0.556091360766699	-0.818072351525316	-0.8240547280385	-0.826729445305636	-1.35240780352596	0.656284960157484	1
Merged-chr18-34624903-4	chr18	34624809	34625009	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289606)	promoter-TSS (NM_001289606)	-27.0	NM_009004	19348.0	Mm.258846	NM_009004	ENSMUSG00000003779	Kif20a	AA415432|Rab6kifl	kinesin family member 20A	protein-coding	3.33356438098974	2.24071301881067	3.7263688772861	3.50679510078277	3.157456536399	3.45032416976732	2.17895308812485	2.96344676111444	-0.497259543607407	0.462486809777289	0.921194606787634
Merged-chr5-140540283-4	chr5	140540173	140540373	+	780.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24794.0	NM_030022	77998.0	Mm.160040	NM_030022	ENSMUSG00000036586	Grifin	E130101O17Rik	galectin-related inter-fiber protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-97062140-3	chr16	97062110	97062310	+	740.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031174, intron 1 of 32)	MTD|LTR|ERVL-MaLR	108525.0	NM_031174	13508.0	Mm.102437	NM_031174	ENSMUSG00000050272	Dscam	4932410A21Rik	DS cell adhesion molecule	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-10890442-1	chr15	10890342	10890542	+	647.0	f0_balb.idr	Intergenic	Intergenic	61391.0	NR_040357	100502601.0	Mm.399434	NR_040357		Gm19276	-	predicted gene, 19276	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-60586890-2	chr3	60586790	60586990	+	777.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310514, intron 2 of 8)	intron (NM_001310514, intron 2 of 8)	85711.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	-1.58994551673671	-1.55912852307891	-1.56844783632235	-1.57610299769523	-1.18549093183599	-1.55710898902261	-1.56633814807757	-1.57473272746952	1.78703309985663	0.610309988231842	1
Merged-chr16-17233576-4	chr16	17233467	17233667	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178922)	promoter-TSS (NM_178922)	-20.0	NM_178922	58180.0	Mm.261602	NM_178922	ENSMUSG00000050240	Hic2	AA409108|HRG22|mKIAA1020	hypermethylated in cancer 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-30029604-2	chr15	30029504	30029704	+	552.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-142989.0	NM_001355502	18163.0	Mm.321648	NM_008729	ENSMUSG00000022240	Ctnnd2	Catnd2|Nprap|neurojugin	catenin (cadherin associated protein), delta 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-73804023-4	chr13	73803928	73804128	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360694, intron 17 of 24)	intron (NM_001360694, intron 17 of 24)	40331.0	NM_011390	20499.0	Mm.275800	NM_011390	ENSMUSG00000017756	Slc12a7	AA408796|D13Ertd261e|Kcc4	solute carrier family 12, member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-21567903-4	chr11	21567804	21568004	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316675, intron 1 of 8)	intron (NM_001316675, intron 1 of 8)	4030.0	NM_008618	17449.0	Mm.212703	NM_008618	ENSMUSG00000020321	Mdh1	B230377B03Rik|D17921|MDH-s|MDHA|Mor-2|Mor2	malate dehydrogenase 1, NAD (soluble)	protein-coding	-0.108051470492373	0.258311048478588	-0.243249739819301	-0.246873014930417	0.479997858561175	-0.237496662681742	-0.242214119726329	-0.246239967664845	0.440880871478031	0.855031144540674	1
Merged-chr12-8432968-5	chr12	8432782	8432982	+	964.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	67127.0	NM_007483	11852.0	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	4.16278240320815	3.35006897366055	2.81418365297792	2.45439115105777	3.37208246811775	2.64449983816386	2.70261384639019	3.24750225004157	-0.556633046099739	0.4119235639673	0.894597257730009
Merged-chr4-153515664-1	chr4	153515564	153515764	+	562.0	f0_balb.idr	Intergenic	Intergenic	-32834.0	NM_001099299	230959.0	Mm.318874	NM_001099299	ENSMUSG00000039546	Ajap1	Gm573	adherens junction associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127065060-2	chr10	127064960	127065160	+	614.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355005, intron 3 of 6)	intron (NM_001355005, intron 3 of 6)	1525.0	NM_001355005	12567.0	Mm.6839	NM_009870	ENSMUSG00000006728	Cdk4	Crk3	cyclin-dependent kinase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123976007-2	chr5	123975907	123976107	+	542.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145070, intron 1 of 31)	intron (NM_145070, intron 1 of 31)	2379.0	NM_145070	29816.0	Mm.149954	NM_145070	ENSMUSG00000000915	Hip1r	AA410023|mKIAA0655	huntingtin interacting protein 1 related	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-18636954-2	chr9	18636854	18637054	+	710.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	118679.0	NM_146606	18322.0	Mm.246530	NM_146606	ENSMUSG00000054141	Olfr24	MOR132-1|MTPCR51	olfactory receptor 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180411060-2	chr1	180410960	180411160	+	561.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081175, intron 2 of 7)	intron (NM_001081175, intron 2 of 7)	72444.0	NM_001081227	381310.0	Mm.44791	NM_001081227	ENSMUSG00000053963	Stum	6330403A02Rik|Gm10001|R75555	mechanosensory transduction mediator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107278737-1	chr9	107278637	107278837	+	598.0	f0_c57.idr	intron (NM_001316691, intron 1 of 7)	intron (NM_001316691, intron 1 of 7)	10659.0	NM_001316691	102626.0	Mm.222612	NM_178907	ENSMUSG00000032577	Mapkapk3	3PK|AI874665|MAPKAP-K3|MAPKAP3|MK-3|MK3|MapkKapk3	mitogen-activated protein kinase-activated protein kinase 3	protein-coding	1.0965398301906	1.54030179152717	1.92828131350896	0.627032816897685	1.43782147148693	0.657635951414329	0.64243416011192	0.629149430064293	-1.85922727085194	0.237446709724962	0.733870588171069
Merged-chr3-88146373-2	chr3	88146273	88146473	+	785.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310593, intron 1 of 10)	intron (NM_001310593, intron 1 of 10)	4001.0	NM_133665	17261.0	Mm.28184	NM_133665	ENSMUSG00000001419	Mef2d	C80750	myocyte enhancer factor 2D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70654316-4	chr8	70654263	70654463	+	847.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023217, intron 2 of 4)	intron (NM_023217, intron 2 of 4)	5375.0	NM_023217	66522.0	Mm.154906	NM_023217	ENSMUSG00000056204	Pgpep1	2810003H13Rik|Gm19458|PAP-I|PGP|PGP-I|PGPI|Pcp	pyroglutamyl-peptidase I	protein-coding	3.24232101754515	3.47561495083578	3.43620653342085	3.34275388554845	2.58200906913266	2.76849633937995	1.93455570708058	3.28652205010244	-1.10535182207485	0.0922275546893233	0.469937514649986
Merged-chr16-21842330-4	chr16	21842235	21842435	+	949.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47988.0	NR_037957	100043489.0	Mm.326535	NR_037957	ENSMUSG00000097290	1300002E11Rik	1500026P21Rik	RIKEN cDNA 1300002E11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-58392191-2	chr1	58392091	58392291	+	714.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025824)	promoter-TSS (NM_025824)	-945.0	NM_025824	66882.0	Mm.21848	NM_025824	ENSMUSG00000051223	Bzw1	1200015E15Rik|mKIAA0005	basic leucine zipper and W2 domains 1	protein-coding	0.0434167756309831	-0.496267531085851	-0.499971334865586	-0.502823233414139	0.0546277025787766	-0.495431500287674	-0.499155146778299	-0.502325373264262	0.0419527451125213	0.988073760716967	1
Merged-chr11-33148245-9	chr11	33148109	33148309	+	875.3463130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_102395)	promoter-TSS (NR_102395)	-809.0	NR_102395	14172.0	Mm.339812	NM_008005	ENSMUSG00000057967	Fgf18	D130055P09Rik|FGF-18	fibroblast growth factor 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-118606831-3	chr5	118606728	118606928	+	629.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347445, intron 2 of 30)	intron (NM_001347445, intron 2 of 30)	46109.0	NM_172424	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-51919193-4	chr6	51919099	51919299	+	875.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018773, intron 6 of 12)	intron (NM_018773, intron 6 of 12)	93350.0	NM_018773	54353.0	Mm.221479	NM_018773	ENSMUSG00000059182	Skap2	2610021A10Rik|AA960083|BB137539|RA70|SKAP-HOM|Saps|Scap2|mSKAP55R	src family associated phosphoprotein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128590422-4	chr10	128590328	128590528	+	828.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010153)	promoter-TSS (NM_010153)	-927.0	NM_010153	13867.0	Mm.373043	NM_010153	ENSMUSG00000018166	Erbb3	C76256|Erbb-3|Erbb3r|Her3	erb-b2 receptor tyrosine kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-25791486-4	chr13	25791384	25791584	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	174832.0	NR_045062	100503530.0	Mm.86763	NR_045062	ENSMUSG00000086531	Gm11351	-	predicted gene 11351	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-130649313-2	chr7	130649213	130649413	+	602.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001004468, intron 3 of 21)	intron (NM_001004468, intron 3 of 21)	-43243.0	NM_001347637	57752.0	Mm.86322	NM_021314	ENSMUSG00000030852	Tacc2	mKIAA4180	transforming, acidic coiled-coil containing protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-59541706-1	chr2	59541606	59541806	+	779.0	f0_balb.idr	Intergenic	Intergenic	57053.0	NM_029723	76747.0	Mm.275769	NM_029723	ENSMUSG00000026989	Dapl1	2310032F03Rik|EEDA	death associated protein-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-128793790-1	chr4	128793690	128793890	+	542.0	f1_balb.idr	intron (NM_001081098, intron 2 of 8)	intron (NM_001081098, intron 2 of 8)	12322.0	NM_001081098	230761.0	Mm.22616	NM_001081098	ENSMUSG00000028799	Zfp362	-	zinc finger protein 362	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-132672699-3	chr7	132672612	132672812	+	992.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029609, intron 6 of 6)	intron (NM_029609, intron 6 of 6)	62069.0	NM_029609	76429.0	Mm.276721	NM_029609	ENSMUSG00000030946	Lhpp	2310007H09Rik	phospholysine phosphohistidine inorganic pyrophosphate phosphatase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-59295804-2	chr10	59295704	59295904	+	800.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27492.0	NM_001316371	18451.0	Mm.2212	NM_011030	ENSMUSG00000019916	P4ha1	AL022634|P4ha	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-148495332-2	chr2	148495232	148495432	+	590.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51797.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-85592182-1	chr1	85592082	85592282	+	1000.0	f1_balb.idr	intron (NM_030194, intron 3 of 11)	Lx7|LINE|L1	6628.0	NM_030194	109032.0	Mm.335802	NM_030194	ENSMUSG00000070034	Sp110	5031415C07Rik|52kDa|5830484A20Rik|Ifi75|Ipr1	Sp110 nuclear body protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126845782-4	chr8	126845695	126845895	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3225.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139734325-4	chr5	139734249	139734449	+	945.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_174850, intron 1 of 16)	intron (NM_174850, intron 1 of 16)	1984.0	NM_174850	231830.0	Mm.240510	NM_174850	ENSMUSG00000036718	Micall2	A930021H16Rik|JRAB|MICAL-L2|mFLJ00139	MICAL-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-13270836-3	chr2	13270727	13270927	+	928.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009105, intron 2 of 8)	intron (NM_009105, intron 2 of 8)	588.0	NM_009105	20163.0	Mm.905	NM_009105	ENSMUSG00000026727	Rsu1	RsuI|rsp-1	Ras suppressor protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-93822539-4	chr2	93822431	93822631	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010163)	promoter-TSS (NM_010163)	37.0	NM_010163	14043.0	Mm.4336	NM_010163	ENSMUSG00000027198	Ext2	AI893565	exostoses (multiple) 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-60443941-1	chr14	60443841	60444041	+	758.5	f0_balb.idr	Intergenic	RMER4A|LTR|ERVK	65655.0	NM_001164705	72125.0	Mm.275499	NM_028113	ENSMUSG00000021986	Amer2	2600011E07Rik|Fam123a	APC membrane recruitment 2	protein-coding	3.17700732604881	2.81962256494221	3.04277151410711	2.75887129476163	3.43274544211614	3.07056493268273	3.0664424886225	1.56319572099649	-0.00702464410099341	0.992459413121029	0.998431161219273
Merged-chr10-41489214-3	chr10	41489138	41489338	+	616.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009213, intron 3 of 9)	intron (NM_009213, intron 3 of 9)	1102.0	NM_009213	20598.0	Mm.953	NM_009213	ENSMUSG00000019822	Smpd2	AW108287|nSMase|nSMase1	sphingomyelin phosphodiesterase 2, neutral	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26201484-2	chr17	26201384	26201584	+	612.666687	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008113)	promoter-TSS (NM_008113)	-134.0	NM_008113	14570.0	Mm.1383	NM_008113	ENSMUSG00000073433	Arhgdig	Gdi5|RIP2|Rho-GDI-3|Rho-GDI2	Rho GDP dissociation inhibitor (GDI) gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-20758914-2	chr14	20758814	20759014	+	558.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360186, intron 12 of 20)	intron (NM_001360186, intron 12 of 20)	-24352.0	NM_010811	17423.0	Mm.4084	NM_010811	ENSMUSG00000039308	Ndst2	Mndns|NDST-2	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-21453054-2	chr13	21452954	21453154	+	774.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347491, intron 1 of 5)	L2a|LINE|L2	673.0	NM_001013786	432731.0	Mm.390557	NM_001013786	ENSMUSG00000022228	Zscan26	BC068174|Zfp187|Znf187	zinc finger and SCAN domain containing 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-7724448-2	chr10	7724295	7724495	+	598.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-1605.0	NM_011835	23924.0	Mm.28127	NM_011835	ENSMUSG00000019794	Katna1	-	katanin p60 (ATPase-containing) subunit A1	protein-coding	-1.56355737717652	-1.81244775989375	-1.82128546162293	-1.82854501295842	-1.83962066705452	-1.81053259306168	-1.81928479966835	-1.82724555674025	-1.28500227969968	0.715751224811686	1
Merged-chr11-8700960-2	chr11	8700855	8701055	+	690.900024	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36420.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	3.87779894439748	3.01327330264149	1.99483672852088	3.01198335705046	3.870677922823	1.52735862677666	1.76798684377002	3.02829389211937	-0.373331956693858	0.669063228111959	0.993492649862288
Merged-chr10-120233790-3	chr10	120233695	120233895	+	749.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	6735.0	NM_025431	66225.0	Mm.291755	NM_025431	ENSMUSG00000020224	Llph	1190005P17Rik	LLP homolog, long-term synaptic facilitation (Aplysia)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-30070539-9	chr16	30070450	30070650	+	992.607422	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	5193.0	NM_008235	15205.0	Mm.390859	NM_008235	ENSMUSG00000022528	Hes1	Hry|bHLHb39	hes family bHLH transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-82976138-3	chr9	82976039	82976239	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081216)	promoter-TSS (NM_001081216)	-650.0	NM_001081216	83946.0	Mm.221688	NM_031879	ENSMUSG00000032253	Phip	2810004D21Rik|4632404O06Rik|Ndrp|Wdr11	pleckstrin homology domain interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-15816623-3	chr6	15816496	15816696	+	913.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	95935.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-83748839-4	chr8	83748729	83748929	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7518.0	NM_001163031	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	6.71779953941188	6.90883187769639	7.04766247516934	6.56764796822036	7.00067855301363	7.25886147496042	7.08695391846915	6.87792880270265	0.254828311450422	0.157050570192433	0.613509683471503
Merged-chr10-120979441-4	chr10	120979337	120979537	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081193)	promoter-TSS (NM_001081193)	-107.0	NM_001081193	380664.0	Mm.339371	NM_001081193	ENSMUSG00000048661	Lemd3	AI316861|Man1	LEM domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21148372-2	chr9	21148272	21148472	+	814.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_016742, intron 1 of 7)	intron (NM_016742, intron 1 of 7)	1534.0	NM_016742	12539.0	Mm.32331	NM_016742	ENSMUSG00000019471	Cdc37	p50|p50Cdc37	cell division cycle 37	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-88997359-4	chr11	88997145	88997345	+	790.919678	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2158.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	0.507546791047614	1.05428243667161	1.23266740310834	0.971397936301666	0.509310920679613	1.06460028810392	0.528411888626474	0.848410806301	-1.08579891239521	0.508488826014524	1
Merged-chr4-3786200-2	chr4	3786100	3786300	+	926.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 12 of 12)	intron (NM_001111096, intron 12 of 12)	49455.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-45002194-4	chr13	45002082	45002282	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025772)	promoter-TSS (NM_025772)	-86.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-75657451-2	chr2	75657351	75657551	+	882.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-1808.0	NM_146130	229279.0	Mm.316306	NM_053263	ENSMUSG00000059005	Hnrnpa3	2410013L13Rik|2610209F03Rik|2610510D13Rik|Hnrpa3	heterogeneous nuclear ribonucleoprotein A3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-105649950-5	chr5	105649873	105650073	+	743.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49996.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	3.6121025433954	4.76596690692488	4.39624201071406	5.25729167902271	2.92232918447552	2.69439657318872	3.95507846862952	3.96667781031213	-1.50259382290295	0.00480536504157779	0.0649265425324891
Merged-chr3-95740274-2	chr3	95740174	95740374	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252653)	promoter-TSS (NM_001252653)	-705.0	NM_001252653	13601.0	Mm.3433	NM_007899	ENSMUSG00000028108	Ecm1	AI663821|p85	extracellular matrix protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-48958741-2	chr13	48958641	48958841	+	565.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033268, intron 1 of 17)	intron (NM_001033268, intron 1 of 17)	9087.0	NM_001033268	218236.0	Mm.426571	NM_001033268	ENSMUSG00000038014	Fam120a	C9orf10|Ossa	family with sequence similarity 120, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-119232813-4	chr4	119232715	119232915	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286148)	promoter-TSS (NM_001286148)	-91.0	NM_001012400	230696.0	Mm.473722	NM_001012400	ENSMUSG00000078584	AU022252	AI450326	expressed sequence AU022252	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-125870980-4	chr8	125870868	125871068	+	854.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175561, intron 8 of 33)	intron (NM_175561, intron 8 of 33)	-26946.0	NR_155422	102632990.0	Mm.429446	NR_155422		A730098A19Rik	-	RIKEN cDNA A730098A19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-82844047-4	chr6	82843954	82844154	+	892.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37799.0	NR_040520	69652.0	Mm.96357	NR_040520	ENSMUSG00000100291	2310069B03Rik	-	RIKEN cDNA 2310069B03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-54250673-4	chr1	54250547	54250747	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030025)	promoter-TSS (NM_030025)	-36.0	NM_030025	78016.0	Mm.67455	NM_030025	ENSMUSG00000025983	Ccdc150	4930511H11Rik	coiled-coil domain containing 150	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-4798549-4	chr6	4798424	4798624	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51218.0	NM_130877	170676.0	Mm.320575	NM_130877	ENSMUSG00000092035	Peg10	AA407948|Edr|HB-1|MEF3L|Mar2|Mart2|MyEF-3|Rtl2	paternally expressed 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-133614819-2	chr2	133614719	133614919	+	700.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50111.0	NR_037273	100526500.0		NR_037273	ENSMUSG00000093338	Mir3090	mmu-mir-3090	microRNA 3090	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-36197996-2	chr17	36197896	36198096	+	587.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7845.0	NM_008208	15043.0	Mm.426002	NM_008208	ENSMUSG00000054128	H2-T3	H-2T3|H2-Tw3|MumuTL|TL	histocompatibility 2, T region locus 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-23768703-2	chr11	23768603	23768803	+	859.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009044, intron 1 of 9)	intron (NM_009044, intron 1 of 9)	2267.0	NM_009044	19696.0	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117779598-4	chr11	117779494	117779694	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_154387)	promoter-TSS (NR_154387)	54.0	NR_154387	217353.0	Mm.286963	NM_145439	ENSMUSG00000025572	Tmc6	D11Ertd204e|EVER1	transmembrane channel-like gene family 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-29908222-2	chr7	29908100	29908300	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001243908)	promoter-TSS (NM_001243908)	-317.0	NM_001243908	73729.0	Mm.333743	NM_001243908	ENSMUSG00000099689	Zfp383	1110003H10Rik	zinc finger protein 383	protein-coding	2.91888769509063	2.28034601705308	3.69624405824533	2.98028979373869	3.50793866413876	3.19749217931595	2.98253904987752	3.61582012522178	0.465403297181064	0.46261414408903	0.921194606787634
Merged-chr4-132813701-3	chr4	132813600	132813800	+	784.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17336.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-56455906-4	chr19	56455765	56455965	+	968.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5772.0	NM_001164263	226245.0	Mm.156742	NM_172641	ENSMUSG00000035818	Plekhs1	9930023K05Rik	pleckstrin homology domain containing, family S member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-17302-1	chr4	17202	17402	+	1000.0	f1_c57bl6.idr	Intergenic	Intergenic	-3154781.0	NM_001167534	100312470.0	Mm.480297	NM_001167534	ENSMUSG00000115072	Vmn1r2	Gm11776	vomeronasal 1 receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-99994224-2	chr12	99994166	99994366	+	942.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164426, intron 2 of 2)	ORR1E|LTR|ERVL-MaLR	29767.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-45894380-3	chr1	45894300	45894500	+	993.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31194.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-88515253-4	chr15	88515153	88515353	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-85049.0	NM_027306	70073.0	Mm.45306	NM_027306	ENSMUSG00000054117	Zdhhc25	1700030J15Rik	zinc finger, DHHC domain containing 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-9630695-4	chr4	9630590	9630790	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001177856, exon 5 of 5)	3' UTR (NM_001177856, exon 5 of 5)	13027.0	NM_001177853	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	0.146156452350443	0.198615305749571	1.7408056753133	0.1690151896602	0.149642453623502	0.202231669855027	1.76195514810053	0.171345487955546	0.0413945296707417	0.989933525016076	0.998431161219273
Merged-chr16-88480346-4	chr16	88480245	88480445	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26633.0	NM_181490	239931.0	Mm.126860	NM_181490	ENSMUSG00000055811	Cldn17	-	claudin 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-102688362-4	chr13	102688277	102688477	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR104_Mam|LTR|Gypsy	-5170.0	NM_001360519	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-79227497-2	chr11	79227397	79227597	+	546.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur2|SINE|Alu	15527.0	NM_001042565	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-3658033-4	chr2	3657940	3658140	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55418.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-45987695-2	chr9	45987595	45987795	+	723.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357241, intron 1 of 5)	(TTTC)n|Simple_repeat|Simple_repeat	-2301.0	NM_001357238	18475.0	Mm.200859	NM_008775	ENSMUSG00000003131	Pafah1b2	2610005M20Rik|AI747451|AU021353|Pafahb|mus[b]	platelet-activating factor acetylhydrolase, isoform 1b, subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-25251927-4	chr12	25251819	25252019	+	980.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	122745.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	2.93166950395462	2.82910935626986	1.8129695733778	3.08378289433092	2.88458873903917	2.73427356882712	2.3819046436844	2.56454494943802	-0.197801005123172	0.793152628819218	0.998431161219273
Merged-chr6-128889573-2	chr6	128889473	128889673	+	802.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289706, intron 2 of 6)	RLTR53B_Mm|LTR|ERVK	1551.0	NM_001254946	232406.0	Mm.30745	NM_001254946	ENSMUSG00000090164	BC035044	-	cDNA sequence BC035044	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-59397151-3	chr14	59397049	59397249	+	658.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001320725, intron 14 of 23)	intron (NM_001320725, intron 14 of 23)	-3637.0	NM_001164289	628705.0	Mm.479244	NM_001164289	ENSMUSG00000091144	Phf11c	EG628705|Gm6907|Phf11	PHD finger protein 11C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4673318-2	chr16	4673218	4673418	+	780.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030205, intron 3 of 27)	PB1D11|SINE|Alu	6402.0	NM_030205	78885.0	Mm.325512	NM_030205	ENSMUSG00000039637	Coro7	0610011B16Rik|AW048373|AW556392	coronin 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141273431-4	chr4	141273327	141273527	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5012.0	NR_151527	100503810.0		NR_151527	ENSMUSG00000085395	Gm13056	-	predicted gene 13056	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-140699329-2	chr4	140699229	140699429	+	598.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2144.0	NM_173867	108911.0	Mm.253	NM_173867	ENSMUSG00000040945	Rcc2	2610510H01Rik|2610529N02Rik|AA536646|AA675016|Td60|mKIAA1470	regulator of chromosome condensation 2	protein-coding	-1.29633872064033	-1.26720680975202	-1.27768629845203	-1.28629446248818	-0.70879630402184	-1.2649358608345	-1.2753139719142	-1.28475360524138	2.50884260628271	0.468217847016783	1
Merged-chr9-63569085-2	chr9	63568985	63569185	+	993.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030068, intron 5 of 21)	intron (NM_030068, intron 5 of 21)	33408.0	NM_030068	78250.0	Mm.444612	NM_030068	ENSMUSG00000037801	Iqch	4921504K03Rik	IQ motif containing H	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-92860947-2	chr16	92860847	92861047	+	817.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-34873.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97399258-2	chr6	97399158	97399358	+	755.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 5 of 23)	intron (NM_145148, intron 5 of 23)	60028.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-37419756-4	chr3	37419654	37419854	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163511)	promoter-TSS (NM_001163511)	-158.0	NM_153561	229228.0	Mm.436967	NM_153561	ENSMUSG00000050174	Nudt6	Asfgf2b	nudix (nucleoside diphosphate linked moiety X)-type motif 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-86435498-2	chr1	86435398	86435598	+	934.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9169.0	NM_027966	71863.0	Mm.179627	NM_027966	ENSMUSG00000036574	Tex44	1700019O17Rik	testis expressed 44	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-65921895-3	chr18	65921817	65922017	+	742.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17172.0	NM_013833	19434.0	Mm.431047	NM_013833	ENSMUSG00000024518	Rax	7530406A22Rik|E130303K03Rik|Rx|ey-1|ey1	retina and anterior neural fold homeobox	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-69632130-2	chr3	69632032	69632232	+	728.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC4|LINE|L1	-33172.0	NM_020026	26879.0	Mm.153710	NM_020026	ENSMUSG00000043300	B3galnt1	B3galt3|b3GT3	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 1	protein-coding	-1.50561175621786	-1.47331375025452	-1.02203377115094	-1.49110398925286	-1.50334449591826	-1.47119716082604	-1.48086985756939	-1.48966786617048	-2.07776723614574	0.550394407909386	1
Merged-chr18-62033290-6	chr18	62033279	62033479	+	650.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	80304.0	NM_172628	225608.0	Mm.262320	NM_172628	ENSMUSG00000045629	Sh3tc2	D430044G18Rik	SH3 domain and tetratricopeptide repeats 2	protein-coding	0.318677934111785	-0.316121796939667	-0.320621291183538	-0.32409402702331	0.331322051847464	-0.315107779543456	-0.319628743977455	-0.32348726480789	0.0419906371069014	0.98733725566035	1
Merged-chr6-119902582-4	chr6	119902467	119902667	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011236)	promoter-TSS (NM_011236)	-131.0	NM_001166382	19365.0	Mm.149	NM_011236	ENSMUSG00000030166	Rad52	Rad52yh	RAD52 homolog, DNA repair protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4204970-2	chr19	4204870	4205070	+	754.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3367.0	NM_011237	19367.0	Mm.277629	NM_011237	ENSMUSG00000024824	Rad9a	Rad9	RAD9 checkpoint clamp component A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-192939206-4	chr1	192939114	192939314	+	911.2291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301370, intron 4 of 8)	GA-rich|Low_complexity|Low_complexity	-83462.0	NM_198247	214791.0	Mm.22806	NM_198247	ENSMUSG00000016262	Sertad4	4833404A09|C130018M11Rik	SERTA domain containing 4	protein-coding	3.3962045140443	3.53104499577484	2.38578066641526	1.59846615412811	2.20492376740246	1.71942655740121	2.08940018565043	2.56885124275083	-1.49336635034545	0.0829598359998588	0.440811387212713
Merged-chr4-155121400-4	chr4	155121292	155121492	+	889.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356327, intron 10 of 12)	intron (NM_001356327, intron 10 of 12)	34788.0	NM_001356327	76866.0	Mm.200590	NM_001081100	ENSMUSG00000029049	Morn1	2900057D20Rik|4930417P05Rik|AU042805	MORN repeat containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-142766369-4	chr3	142766263	142766463	+	985.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145546, intron 1 of 6)	intron (NM_145546, intron 1 of 6)	1116.0	NM_145546	229906.0	Mm.271756	NM_145546	ENSMUSG00000028271	Gtf2b	-	general transcription factor IIB	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-122561547-1	chr10	122561447	122561647	+	940.0	f1_balb.idr	Intergenic	IMPB_01|Satellite|Satellite	8344.0	NR_040616	319272.0	Mm.411763	NR_040616	ENSMUSG00000112095	A130077B15Rik	-	RIKEN cDNA A130077B15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96099573-2	chr3	96099473	96099673	+	991.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4954.0	NM_001025613	229603.0	Mm.272336	NM_001025613	ENSMUSG00000038495	Otud7b	2900060B22Rik|4930463P07Rik|AI462125|CEZANNE|Trabid2|Za20d1	OTU domain containing 7B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47482198-2	chr17	47482098	47482298	+	628.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20093.0	NM_001356290	63856.0	Mm.275901	NM_022015	ENSMUSG00000023980	Taf8	AW260255|Tbn	TATA-box binding protein associated factor 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19228767-4	chr7	19228669	19228869	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207525, intron 1 of 1)	CpG	380.0	NM_207525	403187.0	Mm.239583	NM_207525	ENSMUSG00000052214	Opa3	D630048P19Rik|Gm1425|Gm472	optic atrophy 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6869606-4	chr19	6869483	6869683	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR19-int|LTR|ERVK	-11372.0	NM_001081291	78317.0	Mm.329596	NM_198008	ENSMUSG00000047810	Ccdc88b	2610041P08Rik|Ccdc88	coiled-coil domain containing 88B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-19707491-2	chr4	19707391	19707591	+	572.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_074090, intron 1 of 24)	intron (NR_074090, intron 1 of 24)	1513.0	NM_177327	107568.0	Mm.78312	NM_177327	ENSMUSG00000041058	Wwp1	8030445B08Rik|AIP5|SDRP1|Tiul1	WW domain containing E3 ubiquitin protein ligase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-58669864-4	chr1	58669737	58669937	+	935.1375119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347056, intron 7 of 13)	intron (NM_001347056, intron 7 of 13)	17196.0	NR_045007	100504501.0	Mm.440933	NR_045007	ENSMUSG00000102059	Gm20257	-	caspase 8 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-69085962-2	chr8	69085862	69086062	+	722.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153054, intron 1 of 16)	intron (NM_153054, intron 1 of 16)	-2774.0	NM_007509	11966.0	Mm.249096	NM_007509	ENSMUSG00000006273	Atp6v1b2	AI194269|AI790362|Atp6b2|HO57|R74844	ATPase, H+ transporting, lysosomal V1 subunit B2	protein-coding	-0.986120736994583	-0.969371152505656	-0.528398005185418	-0.982677690072504	-0.985609359348878	-0.966813441431418	-0.649143994241476	-0.982314641938362	-0.515951406040895	0.871389805080857	1
Merged-chr8-120487112-4	chr8	120487014	120487214	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1752.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78863317-3	chr15	78863201	78863401	+	949.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-7772.0	NM_025622	107753.0	Mm.390793	NM_025622	ENSMUSG00000043501	Lgals2	2200008F12Rik|AI324147	lectin, galactose-binding, soluble 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-146685234-4	chr3	146685105	146685305	+	880.761902	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-33888.0	NM_029144	75015.0	Mm.250432	NM_029144	ENSMUSG00000048652	4930503B20Rik	1700013A07Rik|1700095G21Rik|4930483N21Rik|Gm1652|Samd13	RIKEN cDNA 4930503B20 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-84541636-4	chr2	84541557	84541757	+	870.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34784.0	NR_046046	672763.0	Mm.491046	NR_046046	ENSMUSG00000087362	Gm13710	-	predicted gene 13710	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-51934186-4	chr16	51934082	51934282	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53105.0	NR_153657	629091.0	Mm.364775	NR_153657		Gm29686	-	predicted gene, 29686	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-92724712-2	chr16	92724612	92724812	+	677.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111022, intron 2 of 6)	intron (NM_001111022, intron 2 of 6)	-27383.0	NM_009821	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19497162-2	chr7	19497062	19497262	+	584.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	11169.0	NM_177692	232946.0	Mm.64557	NM_177692	ENSMUSG00000057667	Bloc1s3	BC043666|Blos3|E230011O18|rp	biogenesis of lysosomal organelles complex-1, subunit 3	protein-coding	0.699831856660982	0.264099577115536	0.258183033012172	0.765784006613751	0.709800659748329	0.26543512257806	0.259486819609505	0.66787993128595	-0.169931695110488	0.930487587073661	1
Merged-chr4-48048110-4	chr4	48047982	48048182	+	836.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015743, intron 1 of 7)	intron (NM_015743, intron 1 of 7)	2777.0	NM_015743	18124.0	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127586952-2	chr7	127586852	127587052	+	623.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033040, intron 2 of 8)	intron (NM_001033040, intron 2 of 8)	1643.0	NM_001033040	233899.0	Mm.25220	NM_001033040	ENSMUSG00000057176	Ccdc189	Gm166	coiled-coil domain containing 189	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-55476410-2	chr4	55476316	55476516	+	952.083374	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	56059.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	2.32868189910556	2.30374819180216	1.62679598135334	2.51161039407739	5.52584969003223	4.56976884148752	5.59907458702099	5.69378527414437	4.52384585490598	7.52366608379168e-15	4.10313389424239e-12
Merged-chr2-50888111-3	chr2	50888019	50888219	+	697.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11B|LTR|ERVK	-21565.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5211841-2	chr17	5211741	5211941	+	619.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 4 of 19)	intron (NM_001085355, intron 4 of 19)	206926.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64296575-4	chr5	64296450	64296650	+	903.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 11 of 18)	intron (NM_001289514, intron 11 of 18)	66193.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	0.210306031032829	0.230430155299639	0.223853436178919	0.218768906602101	0.700152116612754	0.596595944940691	0.561948004587337	0.952477220496306	4.24191397191835	0.0259089447598602	1
Merged-chr9-119335079-4	chr9	119334993	119335193	+	878.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010851)	TTS (NM_010851)	4947.0	NM_010851	17874.0	Mm.213003	NM_010851	ENSMUSG00000032508	Myd88	-	myeloid differentiation primary response gene 88	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-68077556-3	chr15	68077447	68077647	+	877.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	181309.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-69043637-2	chr2	69043537	69043737	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347161, intron 4 of 10)	intron (NM_001347161, intron 4 of 10)	-92163.0	NM_181547	329416.0	Mm.90047	NM_181547	ENSMUSG00000034738	Nostrin	Daip2|mDaIP2	nitric oxide synthase trafficker	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-24954519-4	chr7	24954356	24954556	+	784.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15619.0	NR_106013	102465633.0		NR_106013	ENSMUSG00000098802	Mir7046	Gm27469|mmu-mir-7046	microRNA 7046	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-39320964-3	chr15	39320869	39321069	+	770.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053271, intron 4 of 26)	intron (NM_053271, intron 4 of 26)	122683.0	NM_053271	116838.0	Mm.309296	NM_053271	ENSMUSG00000037386	Rims2	2810036I15Rik|AW048769|RIM2|Rab3ip2|Rim2(+40A)|Rim2(+44A)|Rim2(+4A)|Serg2|Syt3-rs|mKIAA0751	regulating synaptic membrane exocytosis 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-100415469-3	chr9	100415357	100415557	+	945.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	71016.0	NM_001033543	213208.0	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	0.544080530319006	0.58326444599193	0.570688611768964	0.560817745674781	1.23379751369782	1.6494653458356	1.37526706978764	1.08027679261523	4.84683606050069	0.00270502705828682	0.0421492397991238
Merged-chr5-142822478-2	chr5	142822378	142822578	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5091.0	NM_001122730	231861.0	Mm.354649	NM_178242	ENSMUSG00000039477	Tnrc18	BC025631|EG381742|Zfp469	trinucleotide repeat containing 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-13978863-4	chr1	13978744	13978944	+	945.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-191915.0	NR_004447	433273.0	Mm.304088	NR_004447	ENSMUSG00000097711	Gm5523	EG433273	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-35886816-1	chr12	35886716	35886916	+	668.0	f1_c57bl6.idr	Intergenic	B3|SINE|B2	-38805.0	NM_207531	403205.0	Mm.190508	NM_207531	ENSMUSG00000036231	Agr3	BCMP11|E030025L21Rik|Gm888	anterior gradient 3	protein-coding	-1.17943794200251	-1.15405343839401	-1.16524426910141	-1.17443675064204	-1.17894146482318	-0.651298897862041	-0.986628054269472	-1.17279130084131	2.69714081620639	0.401382668157781	1
Merged-chr17-74458500-2	chr17	74458400	74458600	+	855.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033367, intron 1 of 8)	intron (NM_001033367, intron 1 of 8)	608.0	NM_001033367	268973.0	Mm.311884	NM_001033367	ENSMUSG00000039193	Nlrc4	9530011P19Rik|CLAN|CLAN1|CLANA|CLANB|CLANC|CLAND|Card12|IPAF	NLR family, CARD domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107872300-2	chr9	107872200	107872400	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029169, intron 1 of 20)	intron (NM_029169, intron 1 of 20)	519.0	NM_011251	19654.0	Mm.139926	NM_011251	ENSMUSG00000032582	Rbm6	4930506F14Rik|Def-3|NY-LU-12|g16|mKIAA4015	RNA binding motif protein 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67538248-3	chr10	67538170	67538370	+	873.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010118, exon 1 of 2)	exon (NM_010118, exon 1 of 2)	340.0	NM_001347458	13654.0	Mm.290421	NM_010118	ENSMUSG00000037868	Egr2	Egr-2|Krox-20|Krox20|NGF1-B|Zfp-25|Zfp-6	early growth response 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-100319929-3	chr12	100319799	100319999	+	806.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033213, intron 19 of 19)	intron (NM_001033213, intron 19 of 19)	43290.0	NR_045741	100038713.0	Mm.470751	NR_045741	ENSMUSG00000113679	Gm10432	-	predicted gene 10432	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-20099710-4	chr13	20099603	20099803	+	799.450012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	9196.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	2.04593208494214	1.9104544262247	2.10351750418885	1.80824720061523	2.0618068433504	1.92310488764036	2.11901296169621	1.81620440735252	0.0385772343937382	0.966513097451998	0.998431161219273
Merged-chr12-79123018-4	chr12	79122908	79123108	+	954.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7780.0	NM_009705	11847.0	Mm.3506	NM_009705	ENSMUSG00000021125	Arg2	AII|AU022422	arginase type II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-74222009-2	chr17	74221909	74222109	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133771, intron 6 of 8)	intron (NM_133771, intron 6 of 8)	72854.0	NM_133771	76890.0	Mm.311874	NM_133771	ENSMUSG00000058704	Memo1	0610016J10Rik|D930048L02Rik	mediator of cell motility 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-73771057-2	chr13	73770957	73771157	+	630.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360694, intron 1 of 24)	intron (NM_001360694, intron 1 of 24)	7360.0	NM_011390	20499.0	Mm.275800	NM_011390	ENSMUSG00000017756	Slc12a7	AA408796|D13Ertd261e|Kcc4	solute carrier family 12, member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-87174832-2	chr3	87174701	87174901	+	799.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_130867)	promoter-TSS (NM_130867)	-54.0	NM_130867	170643.0	Mm.89552	NM_130867	ENSMUSG00000041734	Kirrel	6720469N11Rik|Kirrel1|Neph1	kirre like nephrin family adhesion molecule 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-9859156-4	chr1	9859060	9859260	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037759, intron 1 of 16)	intron (NM_001037759, intron 1 of 16)	10879.0	NM_001037759	170755.0	Mm.336410	NM_133220	ENSMUSG00000025915	Sgk3	2510015P22Rik|A330005P07Rik|Cisk|fy|fz	serum/glucocorticoid regulated kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-95856367-2	chr9	95856267	95856467	+	775.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271569, intron 1 of 1)	PB1|SINE|Alu	1150.0	NR_073361	73410.0	Mm.443314	NM_028533	ENSMUSG00000096655	1700065D16Rik	-	RIKEN cDNA 1700065D16 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-27695434-2	chr3	27695334	27695534	+	600.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356953, intron 1 of 26)	intron (NM_001356953, intron 1 of 26)	15018.0	NM_001356953	72007.0	Mm.38832	NM_173182	ENSMUSG00000039286	Fndc3b	1600019O04Rik|AW550168|Fad104|mKIAA4164	fibronectin type III domain containing 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-90173467-2	chr16	90173367	90173567	+	587.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	31230.0	NR_033476	100038709.0	Mm.484070	NR_033476		Gm10789	-	predicted gene 10789	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-64281576-4	chr9	64281456	64281656	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001324557)	promoter-TSS (NM_001324557)	-29.0	NM_025372	66131.0	Mm.196219	NM_025372	ENSMUSG00000032397	Tipin	1110005A05Rik|1110018P21Rik	timeless interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-116140975-4	chr6	116140852	116141052	+	918.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177412, intron 1 of 5)	intron (NM_177412, intron 1 of 5)	52422.0	NM_177412	330401.0	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-79017474-4	chr11	79017293	79017493	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013571, intron 17 of 17)	intron (NM_013571, intron 17 of 17)	-6204.0	NR_045873	790910.0	Mm.440410	NR_045873		Gm11201	-	predicted gene 11201	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-125146361-4	chr4	125146260	125146460	+	900.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18479.0	NM_153159	230738.0	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-10220714-3	chr13	10220615	10220815	+	901.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033269, intron 2 of 4)	intron (NM_033269, intron 2 of 4)	140088.0	NM_033269	12671.0	Mm.342315	NM_033269	ENSMUSG00000046159	Chrm3	Chrm-3|M3|M3R	cholinergic receptor, muscarinic 3, cardiac	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-8018787-4	chr19	8018684	8018884	+	730.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR50A|LTR|ERVK	-52757.0	NM_001361980	171405.0	Mm.326517	NM_134256	ENSMUSG00000067656	Slc22a27	OAT6-L|OAT6-S|Oat9	solute carrier family 22, member 27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118484765-1	chr11	118484665	118484865	+	563.0	f1_balb.idr	intron (NR_153103, intron 8 of 13)	intron (NR_153103, intron 8 of 13)	7933.0	NM_001359368	217364.0	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-45331459-2	chr8	45331359	45331559	+	572.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133969, intron 1 of 10)	intron (NM_133969, intron 1 of 10)	1737.0	NM_133969	102294.0	Mm.245297	NM_133969	ENSMUSG00000079057	Cyp4v3	AU043077|AW111961|Cyp4v2	cytochrome P450, family 4, subfamily v, polypeptide 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-92526849-2	chr5	92526749	92526949	+	731.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2B2|LTR|ERVL	-21192.0	NM_007644	12492.0	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-93642168-2	chr10	93641991	93642191	+	658.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021320, intron 1 of 9)	intron (NM_021320, intron 1 of 9)	1042.0	NM_021320	57764.0	Mm.483868	NM_021320	ENSMUSG00000020019	Ntn4	-	netrin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-104663667-3	chr9	104663570	104663770	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028719, intron 1 of 15)	intron (NM_028719, intron 1 of 15)	94187.0	NM_028719	74020.0	Mm.326240	NM_028719	ENSMUSG00000032564	Cpne4	3632411M23Rik|4933406O10Rik	copine IV	protein-coding	4.0457483390404	2.27094583533717	4.99309319965461	2.99814337092979	5.51285755369272	4.56278189099581	4.52344505395387	5.57682248037381	1.45782853297739	0.0906028772133024	0.464837130114811
Merged-chr17-25135795-2	chr17	25135706	25135906	+	911.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001317404)	promoter-TSS (NM_001317404)	-825.0	NM_001317404	26373.0	Mm.270587	NM_011930	ENSMUSG00000036636	Clcn7	ClC-7|D17Wsu51e	chloride channel, voltage-sensitive 7	protein-coding	0.974191873316354	0.816998066437068	0.174244139017793	0.168974906361286	0.447257574067886	0.18257609898512	0.364803191603004	0.169896787394733	-1.99133480902573	0.31888368391918	1
Merged-chr7-127771371-2	chr7	127771271	127771471	+	691.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_198424, intron 1 of 1)	intron (NM_198424, intron 1 of 1)	1556.0	NM_198424	269999.0	Mm.36852	NM_198424	ENSMUSG00000043964	Orai3	9930124N15|BC061259|Tmem142c	ORAI calcium release-activated calcium modulator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-78010607-2	chr10	78010507	78010707	+	700.625	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008826)	promoter-TSS (NM_008826)	-800.0	NM_001358793	18641.0	Mm.269649	NM_008826	ENSMUSG00000020277	Pfkl	AA407869|ATP-PFK|PFK-B|PFK-L	phosphofructokinase, liver, B-type	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-6584527-2	chr15	6584427	6584627	+	815.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011815, intron 1 of 17)	B3|SINE|B2	4680.0	NM_011815	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-125667300-3	chr2	125667197	125667397	+	957.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199022, intron 5 of 11)	intron (NM_199022, intron 5 of 11)	-5803.0	NM_025613	58521.0	Mm.425101	NM_025613	ENSMUSG00000091337	Eid1	2610002K20Rik|Cri1|EID-1|ORF12|PNAS-22|PTD014	EP300 interacting inhibitor of differentiation 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-58107027-4	chr19	58106932	58107132	+	957.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181415, intron 28 of 28)	MIRc|SINE|MIR	55865.0	NR_049196	100885835.0		NR_049196	ENSMUSG00000093757	Mir5623	Gm26068|mir-5623|mmu-mir-5623	microRNA 5623	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-88903919-4	chr6	88903818	88904018	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011906, intron 1 of 11)	intron (NM_011906, intron 1 of 11)	1667.0	NM_011906	24100.0	Mm.284480	NM_011906	ENSMUSG00000002871	Tpra1	40kDa|Gpr175|Tpra40	transmembrane protein, adipocyte asscociated 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133206115-3	chr4	133206089	133206289	+	837.188904	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	6347.0	NM_008154	14748.0	Mm.4721	NM_008154	ENSMUSG00000049649	Gpr3	Gpcr20|Gpcr21|Gpcr3	G-protein coupled receptor 3	protein-coding	-0.401542271523327	-0.544675963894657	-0.549121137990278	-0.552564533653792	-0.397257118570418	0.343361638496986	-0.548138996392298	-0.551962102911083	2.75534844586607	0.276887573710407	1
Merged-chr6-56894492-1	chr6	56894392	56894592	+	598.0	f0_balb.idr	intron (NM_026004, intron 1 of 8)	intron (NM_026004, intron 1 of 8)	7394.0	NM_001252374	107569.0	Mm.158936	NM_026004	ENSMUSG00000029780	Nt5c3	1600024P05Rik|2610206B05Rik|3110004A18Rik|AI842776|Nt5c3a|Nt5y|P5'N-1|P5N-1|PN-1|PN-I|PSN1|UMPH|Umph-1|Umph1|cN-III|lupin|p36	5'-nucleotidase, cytosolic III	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-6565374-4	chr15	6565269	6565469	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14478.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-149789422-2	chr4	149789322	149789522	+	617.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15155.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-38514611-4	chr2	38514520	38514720	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159631, intron 1 of 9)	intron (NM_001159631, intron 1 of 9)	2744.0	NM_001159631	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43578188-2	chr4	43578088	43578288	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172866)	promoter-TSS (NM_172866)	-547.0	NM_172866	242406.0	Mm.259311	NM_172866	ENSMUSG00000028468	Rgp1	1110029E03Rik|AI527196|F730001J03|mKIAA0258	RAB6A GEF compex partner 1	protein-coding	1.48804487882804	0.861897965454796	0.846875178430923	1.76930213231402	1.59560434670429	0.865243759785211	1.24501376069619	1.7798811595234	0.374549734826837	0.788481604726783	0.998431161219273
Merged-chr1-167284881-3	chr1	167284775	167284975	+	851.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_030724, exon 1 of 7)	5' UTR (NM_030724, exon 1 of 7)	252.0	NM_030724	80914.0	Mm.280895	NM_030724	ENSMUSG00000026558	Uck2	AA407809|AI481316|AU018180|AU020720|TSA903|UK|UMK|Umpk	uridine-cytidine kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-108461750-4	chr4	108461661	108461861	+	968.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175472, intron 2 of 30)	intron (NM_175472, intron 2 of 30)	2335.0	NM_175472	230594.0	Mm.25181	NM_175472	ENSMUSG00000034610	Zcchc11	6030404K05Rik|9230115F04Rik|PPAPD3|mKIAA0191	zinc finger, CCHC domain containing 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115705716-4	chr11	115705622	115705822	+	758.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008163, intron 1 of 5)	RMER15|LTR|ERVL	2875.0	NM_008163	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-123790188-2	chr8	123790088	123790288	+	762.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15808.0	NM_009003	19341.0	Mm.9221	NM_009003	ENSMUSG00000019478	Rab4a	AI848268|Rab4	RAB4A, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-79965225-2	chr10	79965125	79965325	+	681.833374	f1_balb.idr|f1_c57bl6.idr	exon (NM_175450, exon 4 of 10)	exon (NM_175450, exon 4 of 10)	5073.0	NM_175450	216156.0	Mm.35828	NM_175450	ENSMUSG00000035754	Wdr18	2310012I10Rik|AU044733|AW122032	WD repeat domain 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101308999-3	chr15	101308897	101309097	+	696.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15785.0	NR_033803	77717.0	Mm.391998	NR_033803	ENSMUSG00000075408	6030408B16Rik	AI225877	RIKEN cDNA 6030408B16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-139018246-2	chr1	139018146	139018346	+	551.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_181347, intron 1 of 20)	Lx2B2|LINE|L1	40589.0	NR_108103	78229.0	Mm.437838	NR_108103	ENSMUSG00000104900	4930596I21Rik	-	RIKEN cDNA 4930596I21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-95385871-2	chr4	95385771	95385971	+	564.5	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-171636.0	NM_001113412	75578.0	Mm.276098	NM_029347	ENSMUSG00000028573	Fggy	2310009E04Rik	FGGY carbohydrate kinase domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-16110791-4	chr19	16110641	16110841	+	802.674988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22090.0	NM_008139	14682.0	Mm.439701	NM_008139	ENSMUSG00000024639	Gnaq	1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI	guanine nucleotide binding protein, alpha q polypeptide	protein-coding	1.49819364829685	1.69197641850076	2.59308577773357	1.00031173368663	1.95838831269005	1.52598270158193	1.92145072173647	1.0036435427027	-0.515859905812728	0.66478775530543	0.992236411328325
Merged-chr10-42281719-1	chr10	42281619	42281819	+	561.0	f1_c57bl6.idr	Intergenic	Charlie8|DNA|hAT-Charlie	-4977.0	NM_019740	56484.0	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81128214-2	chr10	81128114	81128314	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-8057.0	NM_010731	16969.0	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-58686324-3	chr16	58686230	58686430	+	804.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16122.0	NM_007757	12892.0	Mm.291519	NM_007757	ENSMUSG00000022742	Cpox	CPX|Cpo|HCP|cac|nct	coproporphyrinogen oxidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-13544206-4	chr17	13544125	13544325	+	983.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045436, intron 2 of 4)	RLTR11B|LTR|ERVK	9869.0	NR_045436	72578.0	Mm.46549	NR_045436	ENSMUSG00000038347	2700054A10Rik	-	RIKEN cDNA 2700054A10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-3544146-2	chr13	3544046	3544246	+	738.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008112, intron 1 of 10)	intron (NM_008112, intron 1 of 10)	6071.0	NM_008112	14569.0	Mm.153226	NM_008112	ENSMUSG00000021218	Gdi2	GDI-B|GDIB|Gdi3	guanosine diphosphate (GDP) dissociation inhibitor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127560793-2	chr10	127560693	127560893	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 42 of 88)	intron (NM_008512, intron 42 of 88)	-26234.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27730220-2	chr2	27730120	27730320	+	708.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290482, intron 1 of 9)	intron (NM_001290482, intron 1 of 9)	19637.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19806484-2	chr7	19806384	19806584	+	586.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9675.0	NM_023224	80794.0	Mm.81698	NM_023224	ENSMUSG00000040525	Cblc	2310076I21Rik|2310079L19Rik|Cbl3	Casitas B-lineage lymphoma c	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-115612327-4	chr8	115612219	115612419	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L4_B_Mam|LINE|RTE-X	94575.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-139206009-4	chr4	139205904	139206104	+	898.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271405, intron 1 of 8)	B3A|SINE|B2	11893.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56117466-2	chr17	56117366	56117566	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025874)	promoter-TSS (NM_025874)	82.0	NM_025874	66968.0	Mm.254985	NM_025874	ENSMUSG00000011305	Plin5	2310076L09Rik|AI415325|AW109675|Lsdp5|MLDP|PAT-1	perilipin 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-95321026-2	chr8	95320926	95321126	+	767.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_199455, intron 7 of 7)	intron (NM_199455, intron 7 of 7)	9428.0	NM_199455	73407.0	Mm.472783	NM_028532	ENSMUSG00000090206	Tepp	1700055M20Rik	testis, prostate and placenta expressed	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-94532945-3	chr1	94532844	94533044	+	722.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-264498.0	NR_040473	74689.0	Mm.399187	NR_040473	ENSMUSG00000100518	4930440C22Rik	-	RIKEN cDNA 4930440C22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-157365908-2	chr2	157365808	157366008	+	697.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-1686.0	NM_026968	69161.0	Mm.228619	NM_026968	ENSMUSG00000063019	Manbal	1810024K12Rik|AI836500	mannosidase, beta A, lysosomal-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-6471951-4	chr2	6471877	6472077	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	119241.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-110562536-4	chr11	110562449	110562649	+	837.68335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	83209.0	NM_001356346	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-83665251-4	chr7	83665145	83665345	+	760.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360088, intron 10 of 18)	intron (NM_001360088, intron 10 of 18)	-9750.0	NM_001360089	16170.0	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-11879242-1	chr1	11879142	11879342	+	644.0	f1_c57bl6.idr	intron (NM_001310451, intron 10 of 12)	L1_Mus3|LINE|L1	465137.0	NM_001160371	320492.0	Mm.52021	NM_177173	ENSMUSG00000057715	A830018L16Rik	-	RIKEN cDNA A830018L16 gene	protein-coding	-0.72689296560308	-1.16924831977958	-1.17978566430142	-1.18844135283222	-1.1933685187206	-1.16696483326411	-1.17740024047369	-1.02498946701104	-1.39468585235416	0.675985403624499	1
Merged-chr16-55808435-1	chr16	55808335	55808535	+	807.0	f0_balb.idr	Intergenic	Intergenic	13703.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-121105687-2	chr8	121105587	121105787	+	681.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172761, intron 3 of 7)	intron (NM_172761, intron 3 of 7)	2692.0	NM_172761	234814.0	Mm.31690	NM_172761	ENSMUSG00000031816	Mthfsd	AW049977|BC052066|C920004D05	methenyltetrahydrofolate synthetase domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-137729728-2	chr4	137729628	137729828	+	1000.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_138591, exon 24 of 24)	non-coding (NR_138591, exon 24 of 24)	5267.0	NR_138592	110351.0	Mm.180763	NM_029563	ENSMUSG00000041351	Rap1gap	1300019I11Rik|2310004O14Rik|AI427470|ARPP-90|Gap|Rap1GAP1|Rap1ga1	Rap1 GTPase-activating protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-8093587-4	chr14	8093483	8093683	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4628.0	NM_145458	218699.0	Mm.29515	NM_145458	ENSMUSG00000033885	Pxk	C230080L11Rik|D14Ertd813e|Monaka|Slob	PX domain containing serine/threonine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-110663051-4	chr9	110662956	110663156	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028312, intron 1 of 6)	L1MB4|LINE|L1	6553.0	NM_028312	72654.0	Mm.249115	NM_028312	ENSMUSG00000019659	Ccdc12	2700094L05Rik|C76605	coiled-coil domain containing 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-25167263-3	chr2	25167159	25167359	+	828.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13499.0	NM_025980	67122.0	Mm.46539	NM_025980	ENSMUSG00000078202	Nrarp	2700054M22Rik	Notch-regulated ankyrin repeat protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-45973634-2	chr4	45973534	45973734	+	631.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355189, intron 1 of 16)	intron (NM_001355189, intron 1 of 16)	803.0	NM_001355189	100121.0	Mm.275413	NM_146142	ENSMUSG00000035517	Tdrd7	5730495N10Rik|AI447470|PCTAIRE2BP	tudor domain containing 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-20886271-2	chr9	20886171	20886371	+	583.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-1904.0	NM_145610	235036.0	Mm.2930	NM_145610	ENSMUSG00000004100	Ppan	A230087P06Rik|SSF1	peter pan homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-73247010-2	chr6	73246910	73247110	+	740.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MERVL_2A-int|LTR|ERVL	-1495.0	NM_019879	56451.0	Mm.29845	NM_019879	ENSMUSG00000052738	Suclg1	1500000I01Rik|Sucla1	succinate-CoA ligase, GDP-forming, alpha subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-121839445-4	chr9	121839341	121839541	+	911.2291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028384)	promoter-TSS (NM_028384)	20.0	NM_028384	100502861.0	Mm.335550	NM_028384	ENSMUSG00000079235	Ccdc13	2900041A11Rik|Gm188	coiled-coil domain containing 13	protein-coding	0.64862538718903	0.4087168913715	0.846696647412395	0.3966177325344	0.861025944448955	0.899445028282836	0.403392453759706	0.818800939257607	1.04476637223909	0.546151130199207	1
Merged-chr17-66121763-3	chr17	66121615	66121815	+	768.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1805.0	NM_001003919	320209.0	Mm.259605	NM_001003919	ENSMUSG00000035842	Ddx11	4732462I11Rik|CHL1|CHLR1|KRG2|essa15a	DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-16048086-3	chr19	16048040	16048240	+	754.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4_|SINE|ID	63065.0	NR_045355	100502653.0	Mm.149980	NR_045355	ENSMUSG00000097557	C130060C02Rik	-	RIKEN cDNA C130060C02 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-52931989-2	chr2	52931889	52932089	+	883.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	74121.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-60315983-3	chr2	60315890	60316090	+	962.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013825, intron 27 of 34)	intron (NM_013825, intron 27 of 34)	-31506.0	NM_001290660	66205.0	Mm.227281	NM_025422	ENSMUSG00000060703	Cd302	1110055L24Rik|AI159627	CD302 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-76095050-1	chr13	76094950	76095150	+	975.0	f1_balb.idr	intron (NM_029847, intron 1 of 7)	intron (NM_029847, intron 1 of 7)	3610.0	NM_001360843	77041.0	Mm.196399	NM_029847	ENSMUSG00000021592	Arsk	2810429K17Rik|4833414G15Rik	arylsulfatase K	protein-coding	1.66867763634682	2.32432374756173	1.08660515541603	1.87991498577923	1.89621367558083	1.11374425878985	1.52194675702823	2.18487053870778	-0.200879027322679	0.861760216895833	0.998431161219273
Merged-chr8-45332793-2	chr8	45332693	45332893	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_133969, exon 1 of 11)	exon (NM_133969, exon 1 of 11)	403.0	NM_133969	102294.0	Mm.245297	NM_133969	ENSMUSG00000079057	Cyp4v3	AU043077|AW111961|Cyp4v2	cytochrome P450, family 4, subfamily v, polypeptide 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123896008-2	chr5	123895891	123896091	+	870.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER4B|LTR|ERVK	-11284.0	NM_026603	68184.0	Mm.28549	NM_026603	ENSMUSG00000023106	Denr	1500003K04Rik	density-regulated protein	protein-coding	-0.313008884464092	0.680599275598851	-0.301657033336896	-0.123349525686699	-0.010473070312252	-0.294952521941218	-0.300446371717177	-0.305162121391845	-2.28836153712779	0.341107934221124	1
Merged-chr18-26740501-4	chr18	26740363	26740563	+	873.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-986306.0	NM_001362334	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-69155544-1	chr3	69155444	69155644	+	553.0	f1_balb.idr	intron (NR_126533, intron 2 of 2)	intron (NR_126533, intron 2 of 2)	24311.0	NR_126533	381452.0	Mm.331067	NM_001243000	ENSMUSG00000094763	Gm1647	-	predicted gene 1647	ncRNA	0.159010389812834	0.729657758409306	0.175717810728498	0.169480195573345	0.469172540460104	0.406132324697235	1.20489047160081	0.170573537993141	1.76124479669859	0.365376718372315	1
Merged-chr2-154550284-2	chr2	154550184	154550384	+	904.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_029305)	TTS (NM_029305)	1380.0	NM_029305	75480.0	Mm.440434	NM_029305	ENSMUSG00000038523	1700003F12Rik	-	RIKEN cDNA 1700003F12 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-113322220-3	chr13	113322134	113322334	+	937.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	112575.0	NM_023612	71690.0	Mm.38929	NM_023612	ENSMUSG00000042379	Esm1	0610042H23Rik|AV004503|ESM-1	endothelial cell-specific molecule 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-30954003-4	chr11	30953857	30954057	+	994.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023906)	promoter-TSS (NM_023906)	174.0	NM_025745	66753.0	Mm.294641	NM_025745	ENSMUSG00000020311	Erlec1	4933407N01Rik	endoplasmic reticulum lectin 1	protein-coding	2.17452942720402	2.94763823817773	2.84839797590907	2.55541220760379	1.67238722372359	3.06776106675754	3.28575544255831	2.78228947875331	0.325401961633872	0.676012120598476	0.99440487726309
Merged-chr7-44308598-2	chr7	44308498	44308698	+	596.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1639.0	NM_009131	20256.0	Mm.20428	NM_009131	ENSMUSG00000004473	Clec11a	AW457320|Clecsf3|Scgf	C-type lectin domain family 11, member a	protein-coding	-1.27480050717774	-0.604729833679879	-1.25573295904267	-1.26493563944758	-1.27428069156472	-1.24210192204986	-1.25319678955844	-1.26328836405502	-2.6632876257018	0.439827081912762	1
Merged-chr3-135420735-4	chr3	135420636	135420836	+	973.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025902, intron 1 of 2)	intron (NM_025902, intron 1 of 2)	2697.0	NM_025902	67006.0	Mm.269993	NM_025902	ENSMUSG00000028165	Cisd2	1500009M05Rik|1500026J14Rik|1500031D15Rik|AI848398|B630006A20Rik|Miner1|Naf-1|Noxp70|Zcd2	CDGSH iron sulfur domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-112552227-4	chr12	112552145	112552345	+	899.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36539.0	NM_198411	70435.0	Mm.250193	NM_198411	ENSMUSG00000037679	Inf2	2610204M08Rik|AA589465|AW125550|EG629699	inverted formin, FH2 and WH2 domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-6517806-4	chr4	6517688	6517888	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63517.0	NM_010945	18201.0	Mm.3059	NM_010945	ENSMUSG00000028245	Nsmaf	AA959567|C630007J05|Fan	neutral sphingomyelinase (N-SMase) activation associated factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167686838-3	chr2	167686773	167686973	+	797.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-2042.0	NM_009883	12608.0	Mm.439656	NM_009883	ENSMUSG00000056501	Cebpb	C/EBPbeta|CRP2|IL-6DBP|LAP|LIP|NF-IL6|NF-M|Nfil6	CCAAT/enhancer binding protein (C/EBP), beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-87187080-4	chr6	87186994	87187194	+	904.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054041, intron 16 of 17)	intron (NM_054041, intron 16 of 17)	82348.0	NM_001167937	52372.0	Mm.282851	NM_001167937	ENSMUSG00000090891	D6Ertd527e	AU043841	DNA segment, Chr 6, ERATO Doi 527, expressed	protein-coding	3.29130166330373	3.10043458883757	2.99579425644783	3.25618824064177	3.1883441457733	1.70022834460003	3.58313939821824	2.70491659552188	-0.325593198006557	0.64442475169708	0.983690606979842
Merged-chr1-54476696-2	chr1	54476596	54476796	+	744.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001163314, exon 27 of 27)	3' UTR (NM_001163314, exon 27 of 27)	-37670.0	NM_001033194	98488.0	Mm.25856	NM_001033194	ENSMUSG00000041303	Gtf3c3	TF3C-gamma|TFIIIC102	general transcription factor IIIC, polypeptide 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-33136676-2	chr12	33136576	33136776	+	732.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_015602, intron 3 of 5)	intron (NR_015602, intron 3 of 5)	10910.0	NR_015602	320046.0	Mm.208337	NR_015602	ENSMUSG00000052125	F730043M19Rik	-	RIKEN cDNA F730043M19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69905538-2	chr11	69905438	69905638	+	636.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001291119, exon 6 of 28)	exon (NM_001291119, exon 6 of 28)	3722.0	NM_001013414	216860.0	Mm.268347	NM_001013414	ENSMUSG00000047284	Neurl4	-	neuralized E3 ubiquitin protein ligase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-115676602-4	chr6	115676490	115676690	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356334)	promoter-TSS (NM_001356334)	45.0	NM_001356333	110157.0	Mm.184163	NM_029780	ENSMUSG00000000441	Raf1	6430402F14Rik|AA990557|BB129353|Craf1|D830050J10Rik|Raf-1|c-Raf|cRaf|v-Raf	v-raf-leukemia viral oncogene 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-38107983-1	chr7	38107883	38108083	+	1000.0	f0_c57.idr	promoter-TSS (NM_007633)	promoter-TSS (NM_007633)	-493.0	NM_007633	12447.0	Mm.16110	NM_007633	ENSMUSG00000002068	Ccne1	AW538188|CycE1	cyclin E1	protein-coding	5.49461118919454	4.66310737757177	6.42933869859229	5.45083264215479	5.85480140479415	4.63685212239924	6.12725132103421	5.36403157859737	-0.0530000149510516	0.888615004434989	0.998431161219273
Merged-chr14-50931829-4	chr14	50931736	50931936	+	931.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310505)	promoter-TSS (NM_001310505)	-987.0	NM_001310507	219024.0	Mm.239117	NM_001033271	ENSMUSG00000035953	Tmem55b	BC039161|Pip4p1	transmembrane protein 55b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-128680777-4	chr8	128680702	128680902	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4852.0	NM_010578	16412.0	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118621536-2	chr9	118621436	118621636	+	863.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 1 of 27)	RMER30|DNA|hAT-Charlie	14827.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-55465738-4	chr12	55465639	55465839	+	935.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26908.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-59125767-1	chr3	59125667	59125867	+	692.0	f0_balb.idr	intron (NM_001287119, intron 1 of 2)	intron (NM_001287119, intron 1 of 2)	4995.0	NM_001287124	140795.0	Mm.439021	NM_133200	ENSMUSG00000036381	P2ry14	A330108O13Rik|Gpr105|P2Y14	purinergic receptor P2Y, G-protein coupled, 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-17927280-2	chr16	17927180	17927380	+	826.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_153150, exon 4 of 9)	exon (NM_153150, exon 4 of 9)	939.0	NM_153150	13358.0	Mm.229291	NM_153150	ENSMUSG00000003528	Slc25a1	1300019P08Rik|2610100G11Rik|AI194714|Ctp|Dgsj|Slc20a3	solute carrier family 25 (mitochondrial carrier, citrate transporter), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35001020-4	chr17	35000944	35001144	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033075)	promoter-TSS (NM_033075)	137.0	NM_011690	22321.0	Mm.28420	NM_011690	ENSMUSG00000007029	Vars	Bat6|D17H6S56E|G7a|Vars2	valyl-tRNA synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-47675234-4	chr8	47675122	47675322	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023503)	promoter-TSS (NM_023503)	-63.0	NM_023503	69260.0	Mm.430733	NM_023503	ENSMUSG00000063049	Ing2	2810011M06Rik|Ing1l|Ing2b|P33ING2	inhibitor of growth family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81570970-4	chr10	81570871	81571071	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-4316.0	NM_019725	21886.0	Mm.38608	NM_019725	ENSMUSG00000034771	Tle2	Grg2|mKIAA4188	transducin-like enhancer of split 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107982189-2	chr9	107982089	107982289	+	895.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_023738, intron 21 of 23)	(TG)n|Simple_repeat|Simple_repeat	3727.0	NM_026597	68176.0	Mm.76166	NM_026597	ENSMUSG00000042106	Fam212a	6230427J02Rik|Inka1	family with sequence similarity 212, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-13268274-4	chr10	13268147	13268347	+	836.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359294, intron 2 of 11)	GA-rich|Low_complexity|Low_complexity	56042.0	NM_001195096	215789.0	Mm.283359	NM_001033257	ENSMUSG00000062866	Phactr2	AV158170|BC012871	phosphatase and actin regulator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-65424878-2	chr18	65424778	65424978	+	661.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_105742, intron 3 of 6)	intron (NR_105742, intron 3 of 6)	-6119.0	NM_172833	240354.0	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-75754605-4	chr14	75754513	75754713	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177381)	promoter-TSS (NM_177381)	-120.0	NM_177381	338337.0	Mm.86507	NM_177381	ENSMUSG00000034893	Cog3	E430004N23	component of oligomeric golgi complex 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-78579040-2	chr9	78578940	78579140	+	873.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172773, intron 1 of 10)	intron (NM_172773, intron 1 of 10)	9005.0	NM_172773	235504.0	Mm.46932	NM_172773	ENSMUSG00000049624	Slc17a5	4631416G20Rik|4732491M05|AST|ISSD|NSD|SD|SIALIN|SIASD|SLD	solute carrier family 17 (anion/sugar transporter), member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-22950288-2	chr2	22950188	22950388	+	656.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077190, intron 8 of 10)	intron (NM_001077190, intron 8 of 10)	54766.0	NM_001355467	56075.0	Mm.249752	NM_019501	ENSMUSG00000026784	Pdss1	2610203G20Rik|2700031G06Rik|TPT|TPT 1|Tprt|mDLP1|mSPS1	prenyl (solanesyl) diphosphate synthase, subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-75486550-5	chr10	75486407	75486607	+	879.2666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	30874.0	NM_175133	68778.0	Mm.29382	NM_175133	ENSMUSG00000033416	Gucd1	1110038D17Rik	guanylyl cyclase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-3123286-1	chr11	3123186	3123386	+	889.0	f0_c57.idr	promoter-TSS (NR_003517)	promoter-TSS (NR_003517)	-735.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-122921319-2	chr3	122921219	122921419	+	854.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_046036, intron 1 of 5)	intron (NR_046036, intron 1 of 5)	2797.0	NR_046036	74057.0	Mm.159123	NR_046036	ENSMUSG00000097852	4933405D12Rik	-	RIKEN cDNA 4933405D12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-119056724-4	chr10	119056616	119056816	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6217.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-56705805-2	chr18	56705705	56705905	+	708.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2008.0	NM_010721	16906.0	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124628496-3	chr5	124628394	124628594	+	798.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011596)	promoter-TSS (NM_011596)	-558.0	NM_011596	21871.0	Mm.1158	NM_011596	ENSMUSG00000038023	Atp6v0a2	8430408C20Rik|AI385560|ATP6a2|AW489264|Atp6n1d|Atp6n2|C76904|ISF|J6B7|SHIF|Stv1|TJ6M|TJ6s|Tj6|V-ATPase 116 kDa|V-ATPase a2	ATPase, H+ transporting, lysosomal V0 subunit A2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-155505199-4	chr4	155505114	155505314	+	944.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160017, intron 1 of 10)	intron (NM_001160017, intron 1 of 10)	13853.0	NM_001160016	14688.0	Mm.2344	NM_008142	ENSMUSG00000029064	Gnb1	AA409223|C77571|Gnb-1	guanine nucleotide binding protein (G protein), beta 1	protein-coding	2.24711270127923	3.0137311595396	2.91460528965564	3.0115409150261	2.26562152063181	3.03539878811684	2.93691886858961	3.02656165072412	0.0367741731623456	0.958009685705306	0.998431161219273
Merged-chr1-136661121-3	chr1	136661019	136661219	+	728.799988	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-22277.0	NR_045324	100503460.0	Mm.30630	NR_045324	ENSMUSG00000097113	Gm19705	-	predicted gene, 19705	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-83567881-4	chr4	83567771	83567971	+	817.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355549, intron 6 of 24)	intron (NM_001355549, intron 6 of 24)	42326.0	NM_001355378	320226.0	Mm.180032	NM_029117	ENSMUSG00000052407	Ccdc171	4930418J05Rik|4930473A06Rik|A330015D16Rik	coiled-coil domain containing 171	protein-coding	1.87182841481055	1.33957893615848	2.4389900340895	1.99849172567569	1.3957786061322	1.0259110885957	3.70566456701643	0.949740392025493	0.842334913234666	0.463896822745737	0.922064436622467
Merged-chr12-35293767-3	chr12	35293675	35293875	+	790.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-98878.0	NR_030449	751520.0		NR_030449	ENSMUSG00000076253	Mir680-3	Mirn680-3	microRNA 680-3	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-124142041-4	chr9	124141922	124142122	+	991.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20479.0	NM_009917	12774.0	Mm.14302	NM_009917	ENSMUSG00000079227	Ccr5	AM4-7|CD195|Cmkbr5	chemokine (C-C motif) receptor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-6309695-3	chr2	6309590	6309790	+	650.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040333, intron 4 of 6)	MLT1I|LTR|ERVL-MaLR	-13067.0	NM_001080548	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	-1.52696403314699	-1.49523967873556	-1.5048333853602	-1.51271394162622	-1.52473704212565	-1.49316068248889	-1.50266158046844	-1.06847079017215	2.01069003169785	0.564432837776867	1
Merged-chr7-142481355-2	chr7	142481254	142481454	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271523, intron 1 of 10)	intron (NM_001271523, intron 1 of 10)	4341.0	NM_001271523	16985.0	Mm.234003	NM_019391	ENSMUSG00000018819	Lsp1	Lsp-1|WP34|p50|pp52	lymphocyte specific 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-26534979-4	chr14	26534870	26535070	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347494)	promoter-TSS (NM_001347494)	-346.0	NM_001310445	83997.0	Mm.36769	NM_032008	ENSMUSG00000021870	Slmap	D330001L02Rik|Miranda|Slap|mKIAA1601	sarcolemma associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-33310852-2	chr14	33310752	33310952	+	795.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153800, intron 4 of 10)	RLTR28|LTR|ERVL	94029.0	NM_153800	239027.0	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-50870317-4	chr15	50870224	50870424	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_032000, intron 1 of 5)	intron (NM_032000, intron 1 of 5)	18725.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120750772-4	chr8	120750656	120750856	+	983.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301811, intron 6 of 8)	intron (NM_001301811, intron 6 of 8)	12117.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-65973510-4	chr3	65973414	65973614	+	987.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15265.0	NM_001355432	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-145236336-2	chr4	145236236	145236436	+	735.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011610, intron 1 of 9)	intron (NM_011610, intron 1 of 9)	10534.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-143956967-2	chr2	143956867	143957067	+	710.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_024281, intron 11 of 23)	intron (NM_024281, intron 11 of 23)	41636.0	NM_019771	56431.0	Mm.28919	NM_019771	ENSMUSG00000015932	Dstn	2610043P17Rik|ADF|AU042046|Dsn|corn1|sid23p	destrin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-74919332-4	chr14	74919238	74919438	+	978.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033439, intron 1 of 19)	intron (NM_001033439, intron 1 of 19)	28539.0	NM_001252132	380916.0	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-10545339-4	chr16	10545252	10545452	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001204229)	promoter-TSS (NM_001204229)	13.0	NM_001204229	74374.0	Mm.159176	NM_177562	ENSMUSG00000068663	Clec16a	4932416N17Rik|curt|mKIAA0350	C-type lectin domain family 16, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-99386825-3	chr9	99386730	99386930	+	925.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008624, exon 6 of 6)	3' UTR (NM_008624, exon 6 of 6)	-28300.0	NM_177775	272636.0	Mm.490440	NM_177775	ENSMUSG00000037681	Esyt3	D930024E11|D9Ertd280e|Fam62c|mKIAA4186	extended synaptotagmin-like protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45419110-2	chr7	45419010	45419210	+	705.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1836.0	NM_008497	16866.0	Mm.57061	NM_008497	ENSMUSG00000100916	Lhb	Gm29035|LH|LH-B|LSH-B|LSH-beta	luteinizing hormone beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36126360-4	chr1	36126277	36126477	+	999.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17936.0	NR_105862	102465540.0		NR_105862	ENSMUSG00000098752	Mir6897	Gm27652|mmu-mir-6897	microRNA 6897	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70289512-3	chr11	70289409	70289609	+	897.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33021.0	NM_145684	11685.0	Mm.274093	NM_145684	ENSMUSG00000018907	Alox12e	12-LOX|8-LOX|AW259591|Alox12-ps1|Alox12-ps2|Aloxe|e-LOX1	arachidonate lipoxygenase, epidermal	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3778245-2	chr4	3778131	3778331	+	857.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 10 of 12)	intron (NM_001111096, intron 10 of 12)	57424.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	1.21793836139394	1.26317057970003	0.923665317148208	1.39284487532141	1.32304148573511	0.748831938669493	0.738349565059499	1.1853395374076	-0.796601360693516	0.574336196329642	0.964839776472003
Merged-chr12-79755274-3	chr12	79755169	79755369	+	999.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 8 of 10)	intron (NM_009014, intron 8 of 10)	169464.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-51631731-2	chr6	51631631	51631831	+	638.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	86438.0	NM_001361577	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116071607-4	chr11	116071516	116071716	+	940.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001009573, intron 13 of 32)	intron (NM_001009573, intron 13 of 32)	6345.0	NM_001009573	70450.0	Mm.259460	NM_001009573	ENSMUSG00000057948	Unc13d	2610108D09Rik|Jinx|Munc13-4|mFLJ00067	unc-13 homolog D (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-152171725-3	chr4	152171627	152171827	+	792.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-6373.0	NM_133348	70025.0	Mm.296191	NM_133348	ENSMUSG00000028937	Acot7	2410041A17Rik|Ach1|Act|Bach|CTE-IIa|Cte-II|Lach1	acyl-CoA thioesterase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107556402-5	chr9	107556225	107556425	+	970.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019713, intron 1 of 4)	intron (NM_019713, intron 1 of 4)	1742.0	NM_019713	56289.0	Mm.12091	NM_019713	ENSMUSG00000010067	Rassf1	123F2|AA536941|AU044980|NORE2A|RDA32|REH3P21|Rassf1A|Rassf1B|Rassf1C	Ras association (RalGDS/AF-6) domain family member 1	protein-coding	2.96527769232807	2.43949388263645	2.47799599920865	1.84134025410731	2.804931554596	1.47085054159765	2.49742126775007	2.5269611763973	-0.160480724393651	0.854547959271131	0.998431161219273
Merged-chr10-66919387-2	chr10	66919287	66919487	+	586.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_138560, intron 1 of 4)	RMER10A|LTR|ERVL	997.0	NR_138560	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-90211618-2	chr9	90211543	90211743	+	759.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 10 of 12)	URR1B|DNA|hAT-Charlie	48665.0	NM_001311115	108153.0	Mm.102141	NM_001003911	ENSMUSG00000032363	Adamts7	ADAM-TS7|ADAMTS7B	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 7	protein-coding	0.906716798498369	0.646667325368118	0.636476828018402	1.30478790795911	1.13945306711593	0.648951494080976	1.36635594865973	1.21003572947301	0.966261451126526	0.532368955927833	0.951976652596559
Merged-chr2-152742632-4	chr2	152742527	152742727	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6376.0	NM_001355113	15901.0	Mm.444	NM_010495	ENSMUSG00000042745	Id1	AI323524|D2Wsu140e|Idb1|bHLHb24	inhibitor of DNA binding 1	protein-coding	3.91123906619322	3.83616162513847	4.50240566386747	4.67482585369495	5.64820018451813	5.54254640971542	6.33471837532819	5.65128848506456	1.82258703922809	1.00715757188897e-07	9.01781831904765e-06
Merged-chr9-107259842-1	chr9	107259742	107259942	+	855.3333130000001	f0_balb.idr	intron (NM_001316691, intron 5 of 7)	intron (NM_001316691, intron 5 of 7)	-27933.0	NM_153413	208869.0	Mm.150259	NM_153413	ENSMUSG00000039716	Dock3	MOCA|PBP|mKIAA0299	dedicator of cyto-kinesis 3	protein-coding	-2.05752322593321	-2.15521190974092	-2.16307242109104	-2.16952927915413	-2.17938029103484	-2.15350850414045	-2.16129297361887	-2.16837350464794	-0.683654500252594	0.846597994014493	1
Merged-chr1-133024149-1	chr1	133024049	133024249	+	551.0	f1_c57bl6.idr	intron (NM_008575, intron 1 of 11)	L1_Mus3|LINE|L1	1267.0	NR_126506	17248.0	Mm.426531	NM_008575	ENSMUSG00000054387	Mdm4	4933417N07Rik|AA414968|AL023055|AU018793|AU021806|C85810|Mdmx	transformed mouse 3T3 cell double minute 4	protein-coding	0.238238189661872	-0.116194840931583	0.538867881644286	-0.124745993659837	-0.130000816006712	-0.1151055459216	-0.119959260317067	0.299896776274168	-1.38082715331144	0.556759183635823	1
Merged-chr6-134135113-4	chr6	134135016	134135216	+	989.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 2 of 8)	intron (NM_001303102, intron 2 of 8)	99416.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-122771196-4	chr2	122771086	122771286	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027888)	promoter-TSS (NR_027888)	-527.0	NR_027888	59010.0	Mm.28986	NM_021507	ENSMUSG00000005803	Sqor	0610039J17Rik|4930557M22Rik|Sqrdl	sulfide quinone oxidoreductase	protein-coding	4.54022677062979	4.16641480498137	5.13724080840022	4.76254435195091	4.65061774845253	5.06882299942555	5.03371619306338	4.61679152908717	0.187759568681281	0.602824589563396	0.973565005745828
Merged-chr18-17626212-2	chr18	17626112	17626312	+	647.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45222.0	NR_045374	75162.0	Mm.60874	NR_045374		4930545E07Rik	-	RIKEN cDNA 4930545E07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-20738649-2	chr18	20738549	20738749	+	859.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019737, intron 1 of 8)	(A)n|Simple_repeat|Simple_repeat	7755.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-121501675-4	chr5	121501564	121501764	+	731.424988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172125, exon 1 of 1)	exon (NM_172125, exon 1 of 1)	1316.0	NM_172125	280667.0	Mm.444773	NM_172125	ENSMUSG00000062438	Adam1b	Adam1|Ftna	a disintegrin and metallopeptidase domain 1b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34165296-4	chr17	34165241	34165441	+	822.525024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	12150.0	NM_010387	14999.0	Mm.460938	NM_010387	ENSMUSG00000079547	H2-DMb1	AI385589|H-2Mb1|H2-Mb1	histocompatibility 2, class II, locus Mb1	protein-coding	1.52398651804012	0.981513081406108	1.18602687888439	0.948894616840928	2.05827293386114	1.97723576386961	1.67470829188449	1.61954613128626	2.39636340455721	0.0523487432130346	0.334910861389138
Merged-chr1-189806735-1	chr1	189806635	189806835	+	668.0	f0_c57.idr	intron (NM_008976, intron 3 of 18)	ORR1E|LTR|ERVL-MaLR	78467.0	NM_008976	19250.0	Mm.4498	NM_008976	ENSMUSG00000026604	Ptpn14	C130080N23Rik|PTP36	protein tyrosine phosphatase, non-receptor type 14	protein-coding	3.62171831536173	3.61848814090614	3.08177044917968	4.18476943290697	2.52859043883672	2.56297674227555	2.08392342047481	1.77443179886547	-2.46601250871878	0.000326712495160681	0.00782935389534858
Merged-chr11-78094670-4	chr11	78094561	78094761	+	997.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346762)	promoter-TSS (NM_001346762)	-6.0	NM_001346762	216971.0	Mm.119387	NM_145430	ENSMUSG00000037750	Fam222b	9630020I17Rik	family with sequence similarity 222, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-104285099-4	chr9	104284989	104285189	+	849.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22159.0	NM_001163026	235567.0	Mm.217256	NM_001163026	ENSMUSG00000032560	Dnajc13	D030002L11Rik|Gm1124|RME-8|Rme8|mKIAA0678	DnaJ heat shock protein family (Hsp40) member C13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-97880718-4	chr15	97880592	97880792	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009504, intron 3 of 9)	intron (NM_009504, intron 3 of 9)	27604.0	NM_009504	22337.0	Mm.245084	NM_009504	ENSMUSG00000022479	Vdr	Nr1i1	vitamin D (1,25-dihydroxyvitamin D3) receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120792720-2	chr11	120792620	120792820	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_026824, exon 7 of 14)	exon (NM_026824, exon 7 of 14)	3675.0	NM_026824	68730.0	Mm.180622	NM_026824	ENSMUSG00000025155	Dus1l	1110032N12Rik	dihydrouridine synthase 1-like (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5039887-1	chr19	5039787	5039987	+	997.0	f1_balb.idr	exon (NM_175383, exon 1 of 2)	exon (NM_175383, exon 1 of 2)	1061.0	NM_175383	108902.0	Mm.29628	NM_175383	ENSMUSG00000047379	B4gat1	1500032M01Rik|B3gnt1|B3gnt6|BETA3GNT1|iGAT|iGNT	beta-1,4-glucuronyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-109413976-3	chr4	109413904	109414104	+	891.2333369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153392, intron 1 of 17)	ORR1E|LTR|ERVL-MaLR	-1643.0	NM_001145948	230603.0	Mm.33091	NM_153392	ENSMUSG00000028555	Ttc39a	4922503N01Rik	tetratricopeptide repeat domain 39A	protein-coding	0.861303328624313	0.895984766181547	0.884617929770548	0.875850483633851	1.67776225509512	1.70584561716421	2.20815126312861	1.21036323356812	5.31424159029894	0.000376545606651905	0.00883532109897565
Merged-chr5-43877592-4	chr5	43877470	43877670	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007646, intron 1 of 7)	intron (NM_007646, intron 1 of 7)	8761.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-69204839-2	chr10	69204739	69204939	+	649.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3713.0	NM_001252636	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-62122743-4	chr9	62122637	62122837	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_039595)	promoter-TSS (NR_039595)	-143.0	NR_039595	100628602.0		NR_039595	ENSMUSG00000092696	Mir5133	mir-5133|mmu-mir-5133|mu-mir-5133	microRNA 5133	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-22306392-2	chr9	22306292	22306492	+	751.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_145612, intron 1 of 7)	intron (NM_145612, intron 1 of 7)	1246.0	NM_145612	235050.0	Mm.306038	NM_145612	ENSMUSG00000066829	Zfp810	BC005471	zinc finger protein 810	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-75155741-2	chr8	75155641	75155841	+	635.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46232.0	NM_008566	17218.0	Mm.5048	NM_008566	ENSMUSG00000005410	Mcm5	AA617332|AI324988|AL033333|Cdc46|Mcmd5|P1-CDC46	minichromosome maintenance complex component 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-127248762-4	chr1	127248684	127248884	+	946.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145128, intron 1 of 17)	intron (NM_145128, intron 1 of 17)	43798.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-75982241-3	chr16	75982134	75982334	+	630.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC5|LINE|L1	-18550.0	NR_155447	102632240.0	Mm.417237	NR_155447	ENSMUSG00000087214	Gm15555	-	predicted gene 15555	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-151343718-4	chr1	151343636	151343836	+	996.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359262)	promoter-TSS (NM_001359262)	-750.0	NM_001359262	117198.0	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116740888-2	chr11	116740788	116740988	+	604.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-11279.0	NR_003364	193217.0	Mm.100084	NR_003364		BC018473	-	cDNA sequence BC018473	ncRNA	1.14210357296029	1.4216165429012	0.754150659806041	1.20715509207171	1.15195168236548	1.15498664151853	1.48771682381117	0.746964682979109	0.045444288914407	0.974023924207168	0.998431161219273
Merged-chr8-71272604-4	chr8	71272486	71272686	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001142323)	promoter-TSS (NM_001142323)	4.0	NM_001163042	76478.0	Mm.27355	NM_029621	ENSMUSG00000035439	Haus8	2410004L22Rik|Hice1	4HAUS augmin-like complex, subunit 8	protein-coding	3.39616134409757	2.43349557436289	6.97565444790185	4.56056824058632	3.88254548893577	2.45924886761919	5.69825480720434	4.75508221020018	-0.891116164838776	0.495646876193479	0.936302805799732
Merged-chr1-142688970-1	chr1	142688870	142689070	+	780.0	f0_balb.idr	Intergenic	Intergenic	-951727.0	NM_020025	26878.0	Mm.285580	NM_020025	ENSMUSG00000033849	B3galt2	-	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-44103911-4	chr14	44103795	44103995	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001012766)	TTS (NM_001012766)	1008.0	NM_017388	53876.0	Mm.327386	NM_017388		Ear3	Rnase3|mR3	eosinophil-associated, ribonuclease A family, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-69004546-4	chr3	69004445	69004645	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133786)	promoter-TSS (NM_133786)	25.0	NM_026641	68259.0	Mm.389451	NM_026641	ENSMUSG00000027778	Ift80	4921524P20Rik|Wdr56|mKIAA1374	intraflagellar transport 80	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-3493152-4	chr8	3493061	3493261	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080461)	promoter-TSS (NM_080461)	23.0	NM_080461	140482.0	Mm.299073	NM_080461	ENSMUSG00000047264	Zfp358	Zfend	zinc finger protein 358	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-32939546-2	chr18	32939445	32939645	+	710.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009793, intron 1 of 10)	CpG	504.0	NM_009793	12326.0	Mm.222329	NM_009793	ENSMUSG00000038128	Camk4	A430110E23Rik|AI666733|CaMKIV|CaMKIV/Gr|D18Bwg0362e	calcium/calmodulin-dependent protein kinase IV	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-32172942-2	chr12	32172842	32173042	+	741.666687	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001146201)	TTS (NM_001146201)	35396.0	NM_001146201	30955.0	Mm.101369	NM_020272	ENSMUSG00000020573	Pik3cg	5830428L06Rik|PI3Kgamma|p110gamma	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding	-0.180603787604048	-0.162224810362136	-0.168202995761939	-0.172843512671688	0.683418341766447	-0.160882778212808	0.571235119892633	-0.172031014493351	4.0464680385332	0.090821164009486	1
Merged-chr8-72548398-4	chr8	72548299	72548499	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027485)	promoter-TSS (NM_027485)	-89.0	NM_027485	70625.0	Mm.235885	NM_027485	ENSMUSG00000045248	Med26	5730493L18Rik|AI414941|AW495270|Crsp7	mediator complex subunit 26	protein-coding	7.8508277789459	7.66006816897535	7.16904050717698	7.87846132394998	7.62978694104277	7.5754279150127	7.73429839323921	7.64746616983583	-0.0227145765513963	0.888698328097309	0.998431161219273
Merged-chr5-72264420-2	chr5	72264320	72264520	+	655.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_153389, exon 12 of 23)	exon (NM_153389, exon 12 of 23)	61077.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	-0.166167085322595	-0.413860279488791	-0.417703687591244	-0.124155828040154	-0.424832520188885	0.197061670308911	-0.416856858714206	-0.420145716822749	0.431854439149998	0.865291492327731	1
Merged-chr11-5762275-6	chr11	5762184	5762384	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361588)	promoter-TSS (NM_001361588)	92.0	NM_001361588	72046.0	Mm.271657	NM_178623	ENSMUSG00000049680	Urgcp	2010005J08Rik|9130001I21Rik|AW060359|Urg4|mKIAA1507	upregulator of cell proliferation	protein-coding	5.78929166224496	5.16537843920065	5.08444641323842	4.70907902840045	5.77579881671713	5.42123106559355	6.4776579903411	3.81499041767822	0.474206454442499	0.448969456458019	0.91525406604412
Merged-chr14-105896228-4	chr14	105896019	105896219	+	843.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011897, intron 1 of 1)	CpG	700.0	NM_011897	24064.0	Mm.89982	NM_011897	ENSMUSG00000022114	Spry2	sprouty2	sprouty RTK signaling antagonist 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-24404312-1	chr5	24404212	24404412	+	546.0	f1_c57bl6.idr	intron (NM_029020, intron 9 of 15)	intron (NM_029020, intron 9 of 15)	-9139.0	NM_183000	171209.0	Mm.299636	NM_183000	ENSMUSG00000038276	Asic3	AW742291|Accn3|DRASIC|SLNAC1|TNAC1	acid-sensing (proton-gated) ion channel 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115001668-4	chr11	115001530	115001730	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_134158, exon 1 of 4)	5' UTR (NM_134158, exon 1 of 4)	250.0	NM_134158	140497.0	Mm.2699	NM_134158	ENSMUSG00000044811	Cd300c2	CLM4|Cd300c|Cd300d|DIgR1|Igsf7|Lmir2|MAIR-II	CD300C molecule 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125256746-4	chr6	125256636	125256836	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8789.0	NR_015527	73870.0	Mm.440681	NR_015527	ENSMUSG00000108129	4930417O13Rik	-	RIKEN cDNA 4930417O13 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24672378-4	chr17	24672273	24672473	+	924.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001348231, intron 1 of 11)	intron (NM_001348231, intron 1 of 11)	2686.0	NM_183149	213753.0	Mm.219581	NM_183149	ENSMUSG00000041130	Zfp598	BC023040|Ntrap|Znf598	zinc finger protein 598	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-117105497-4	chr2	117105392	117105592	+	883.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-15579.0	NM_001277256	114715.0	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41316615-2	chr19	41316515	41316715	+	752.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 8 of 16)	intron (NM_031376, intron 8 of 16)	-52611.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129883082-4	chr4	129882907	129883107	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-23219.0	NR_045190	319894.0	Mm.59196	NR_045190	ENSMUSG00000086369	E330017L17Rik	-	RIKEN cDNA E330017L17 gene	ncRNA	2.33809667100261	2.29966108379242	2.2254884417474	2.04670755791523	2.17948853349708	1.66288263119719	2.11705454423669	2.38225776637542	-0.289952196578542	0.739760491220195	0.998431161219273
Merged-chr2-173349095-2	chr2	173348995	173349195	+	573.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-72562.0	NM_022995	65112.0	Mm.73682	NM_022995	ENSMUSG00000038400	Pmepa1	2210418I02Rik|AW455466|Erg1.2|N4wbp4|Stag1|Tmepai	prostate transmembrane protein, androgen induced 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99053615-2	chr7	99053515	99053715	+	561.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 6 of 14)	RLTR25B|LTR|ERVK	87529.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99825504-2	chr15	99825404	99825604	+	826.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113545, intron 3 of 10)	intron (NM_001113545, intron 3 of 10)	-5355.0	NM_023063	65970.0	Mm.33207	NM_023063	ENSMUSG00000023022	Lima1	Eplin	LIM domain and actin binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-28433060-2	chr2	28432960	28433160	+	811.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14881.0	NM_001005420	241289.0	Mm.330095	NM_001005420	ENSMUSG00000035829	Ppp1r26	Gm347|Kiaa0649|mKIAA0649	protein phosphatase 1, regulatory subunit 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28011172-2	chr17	28011072	28011272	+	627.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_181413, intron 12 of 24)	intron (NM_181413, intron 12 of 24)	69412.0	NM_001357681	21463.0	Mm.29758	NM_013687	ENSMUSG00000062859	Tcp11	D17Ken1|Tcp-11	t-complex protein 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-93618844-1	chr17	93618744	93618944	+	543.0	f1_c57bl6.idr	Intergenic	L1VL4|LINE|L1	419676.0	NM_009625	11516.0	Mm.3407	NM_009625	ENSMUSG00000024256	Adcyap1	PACAP	adenylate cyclase activating polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-48565338-2	chr13	48565238	48565438	+	992.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27066.0	NR_029725	387244.0		NR_029725	ENSMUSG00000065421	Mirlet7a-1	Let-7a|Mirnlet7a|Mirnlet7a-1|let-7a-1	microRNA let7a-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-4319067-2	chr9	4318967	4319167	+	586.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164574, intron 2 of 2)	intron (NM_001164574, intron 2 of 2)	9251.0	NM_026962	69149.0	Mm.25946	NM_026962	ENSMUSG00000025893	Kbtbd3	2200003A07Rik|Bklhd3	kelch repeat and BTB (POZ) domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-118389981-4	chr1	118389882	118390082	+	891.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359330, intron 1 of 39)	intron (NM_001359330, intron 1 of 39)	924.0	NM_001359334	76707.0	Mm.138740	NM_029709	ENSMUSG00000064302	Clasp1	1700030C23Rik|5730583A19Rik|B130045P17Rik|CLASP1alpha	CLIP associating protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35779168-3	chr17	35779077	35779277	+	847.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045459, intron 2 of 2)	intron (NR_045459, intron 2 of 2)	6727.0	NR_045459	74601.0	Mm.410840	NR_045459	ENSMUSG00000092171	4833427F10Rik	-	RIKEN cDNA 4833427F10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-28311069-1	chr5	28310969	28311169	+	671.5	f0_c57.idr	Intergenic	C-rich|Low_complexity|Low_complexity	-6120.0	NM_028234	381626.0	Mm.304075	NM_028234	ENSMUSG00000048271	Rbm33	3200001K10Rik|6430512A10Rik|AA386890|Prr8	RNA binding motif protein 33	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-138068314-3	chr4	138068126	138068326	+	999.7222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001256195, intron 4 of 34)	intron (NM_001256195, intron 4 of 34)	70292.0	NR_126429	73563.0	Mm.444294	NR_126429	ENSMUSG00000084804	1700095J12Rik	-	RIKEN cDNA 1700095J12 gene	ncRNA	5.4155566645524	4.5376313821575	5.82440933184368	3.45591129084009	2.41997347015164	2.61742120535831	3.3938356782283	3.16092502944237	-2.82423351385477	6.65618699741472e-07	4.62515047847385e-05
Merged-chr14-54410330-6	chr14	54410238	54410438	+	984.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253680)	promoter-TSS (NM_001253680)	-866.0	NM_001253680	20540.0	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	3.26893003502667	1.64645914582356	2.61106765300732	3.3060837098932	3.23212785256552	2.86354519167942	2.63247358033672	3.78586119124553	0.573521939182441	0.438959074982981	0.909130714404946
Merged-chr3-106448796-2	chr3	106448696	106448896	+	700.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33635.0	NM_001093754	72121.0	Mm.14816	NM_028110	ENSMUSG00000027901	Dennd2d	2010308M01Rik|AI451421	DENN/MADD domain containing 2D	protein-coding	-0.824304660665838	-0.88927760145927	-1.06999218569642	-1.07585713136635	-0.818287444740617	-1.05685314174029	-1.06754755566929	-1.07554359523961	-0.576351167167816	0.850199307881881	1
Merged-chr16-55907249-4	chr16	55907132	55907332	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028815, intron 10 of 10)	intron (NM_028815, intron 10 of 10)	-11953.0	NM_001134457	385658.0	Mm.310635	NM_001134457	ENSMUSG00000075033	Nxpe3	Fam55c|Gm1752|Gm611	neurexophilin and PC-esterase domain family, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-52104875-2	chr16	52104775	52104975	+	563.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033238, intron 3 of 17)	RSINE1|SINE|B4	73326.0	NM_001033238	208650.0	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46135435-4	chr19	46135344	46135544	+	918.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008852)	TTS (NM_008852)	3545.0	NM_007703	12686.0	Mm.21806	NM_007703	ENSMUSG00000038754	Elovl3	CIN-2|Cig30	elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-126149195-2	chr4	126149095	126149295	+	799.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172145, intron 2 of 2)	CpG-10311	1192.0	NM_172145	230752.0	Mm.41569	NM_172145	ENSMUSG00000050212	Eva1b	2610027C15Rik|Fam176b	eva-1 homolog B (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-24077505-3	chr11	24077380	24077580	+	638.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159289)	promoter-TSS (NM_001159289)	-576.0	NM_016707	14025.0	Mm.53687	NM_016707	ENSMUSG00000000861	Bcl11a	2810047E18Rik|BCL-11A|Ctip1|D930021L15Rik|Evi9|Evi9a|Evi9b|Evi9c|mKIAA1809	B cell CLL/lymphoma 11A (zinc finger protein)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-106299455-4	chr9	106299340	106299540	+	898.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027354, intron 7 of 10)	PB1D10|SINE|Alu	18379.0	NM_027354	70235.0	Mm.23054	NM_027354	ENSMUSG00000023345	Poc1a	2510040D07Rik|Wdr51a|cha	POC1 centriolar protein A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-73037444-3	chr2	73037341	73037541	+	798.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56995.0	NM_001018042	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-60618915-2	chr13	60618815	60619015	+	812.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	16704.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-75676464-4	chr10	75676350	75676550	+	906.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172549, intron 29 of 36)	MIR3|SINE|MIR	-32442.0	NM_027890	71733.0	Mm.247956	NM_027890	ENSMUSG00000006342	Susd2	1200011D11Rik	sushi domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-21488956-4	chr17	21488872	21489072	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013843)	promoter-TSS (NM_013843)	-16.0	NM_013843	24132.0	Mm.42140	NM_013843	ENSMUSG00000057409	Zfp53	D030067O06Rik|KRAZ1|Zfp-53|Zfp118|zfas8	zinc finger protein 53	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-21403064-4	chr11	21402961	21403161	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31794.0	NM_001290634	216558.0	Mm.28877	NM_139297	ENSMUSG00000001891	Ugp2	UDPGP|UGPase	UDP-glucose pyrophosphorylase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-120977224-1	chr7	120977124	120977324	+	821.0	f0_balb.idr	intron (NM_001354986, intron 1 of 4)	intron (NM_001354986, intron 1 of 4)	5088.0	NM_007672	12585.0	Mm.1640	NM_007672	ENSMUSG00000030878	Cdr2	AA617262	cerebellar degeneration-related 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3842497-2	chr19	3842397	3842597	+	767.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9276.0	NM_001271496	12660.0	Mm.225505	NM_013490	ENSMUSG00000024843	Chka	CK|CK/EK-alpha|Chetk-alpha|Chk|ChoK|EK|EtnK-alpha	choline kinase alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-53996785-3	chr6	53996692	53996892	+	966.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110484, intron 2 of 3)	intron (NR_110484, intron 2 of 3)	18101.0	NR_110484	320178.0	Mm.320413	NR_110484	ENSMUSG00000108060	4921529L05Rik	4930590G02Rik	RIKEN cDNA 4921529L05 gene	ncRNA	3.71167649375112	3.8135817927226	3.8572000684243	2.77718924452934	1.40534070387047	2.37902179429076	3.10543551995313	2.38322322868144	-1.97103757911448	0.00653508603145841	0.0811676627385486
Merged-chr2-91481000-2	chr2	91480900	91481100	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172668, intron 15 of 37)	intron (NM_172668, intron 15 of 37)	23469.0	NM_001145857	228357.0	Mm.275149	NM_172668	ENSMUSG00000027253	Lrp4	6430526J12Rik|D230026E03|Megf7|mdig	low density lipoprotein receptor-related protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96223111-4	chr3	96222998	96223198	+	875.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_178214, exon 1 of 1)	3' UTR (NM_178214, exon 1 of 1)	2026.0	NM_178214	319190.0	Mm.439791	NM_178214	ENSMUSG00000068854	Hist2h2be	AV127319|H2b-613|T25626	histone cluster 2, H2be	protein-coding	0.47892236347554	0.550849377913663	1.11973230132475	0.509416885399843	0.611788678036355	0.356267119450407	0.349009785957638	0.890643347120453	-0.707857167470965	0.674420560388675	1
Merged-chr6-117909263-2	chr6	117909163	117909363	+	582.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166428, intron 1 of 3)	B1_Mm|SINE|Alu	1459.0	NM_001166429	98758.0	Mm.422979	NM_133834	ENSMUSG00000042079	Hnrnpf	4833420I20Rik|AA407306|Hnrpf	heterogeneous nuclear ribonucleoprotein F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21032917-2	chr9	21032817	21033017	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_035438)	promoter-TSS (NR_035438)	-589.0	NR_035438	100316681.0		NR_035438	ENSMUSG00000084663	Mir1900	Mirn1900|mmu-mir-1900	microRNA 1900	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-119614893-2	chr10	119614793	119614993	+	816.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133442, intron 1 of 21)	intron (NM_133442, intron 1 of 21)	146806.0	NR_045359	75321.0	Mm.402041	NR_045359	ENSMUSG00000084764	Grip1os2	4930564G21Rik	glutamate receptor interacting protein 1, opposite strand 2	ncRNA	-1.18378942727406	-1.15669478905697	-0.457913181653105	-1.17806440097404	-1.18323730008524	-1.15415234459186	-1.16577117532349	-1.17633933179771	-2.81844548480871	0.412768592413622	1
Merged-chr17-28698934-2	chr17	28698834	28699034	+	761.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001168514, intron 2 of 12)	(TG)n|Simple_repeat|Simple_repeat	6366.0	NM_001357724	26416.0	Mm.311337	NM_011951	ENSMUSG00000053436	Mapk14	CSBP2|Crk1|Csbp1|Mxi2|PRKM14|PRKM15|p38|p38-alpha|p38MAPK|p38a|p38alpha	mitogen-activated protein kinase 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-161251576-2	chr1	161251470	161251670	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_007453)	promoter-TSS (NM_007453)	-360.0	NM_001303408	11758.0	Mm.186185	NM_007453	ENSMUSG00000026701	Prdx6	1-Cys Prx|1-cysPrx|9430088D19Rik|AA690119|Aop2|Brp-12|CP-3|GPx|Ltw-4|Ltw4|Lvtw-4|NSGPx|ORF06|Prdx5|aiPLA2	peroxiredoxin 6	protein-coding	4.76382268600018	4.26160544224557	3.42067827984078	3.49418865314815	3.74218828030059	2.96520469061141	2.31052146628995	3.86564956584701	-1.05601824977507	0.0754628049160797	0.416340925835281
Merged-chr5-117140522-3	chr5	117140410	117140610	+	764.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081308, intron 1 of 19)	intron (NM_001081308, intron 1 of 19)	6922.0	NM_183306	330177.0	Mm.24343	NM_183306	ENSMUSG00000061288	Taok3	2900006A08Rik|A130052D22|A430105I05Rik	TAO kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-12729194-3	chr10	12729103	12729303	+	945.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011682, intron 13 of 73)	intron (NM_011682, intron 13 of 73)	132532.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-17911394-4	chr16	17911289	17911489	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022408)	promoter-TSS (NM_022408)	-41.0	NM_001081633	27886.0	Mm.256480	NM_022408	ENSMUSG00000003527	Dgcr14	AI462402|D16H22S1269E|Dgcr1|Dgsi|ES2|Es2el|Ess2	DiGeorge syndrome critical region gene 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-119818930-2	chr1	119818830	119819030	+	681.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019933, intron 1 of 26)	ID_B1|SINE|B4	18141.0	NM_019933	19258.0	Mm.458796	NM_019933	ENSMUSG00000026384	Ptpn4	PTPMEG|Ptn4|TEP|TEP/mPTPMEG|hPTP-MEG	protein tyrosine phosphatase, non-receptor type 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-28261573-1	chr9	28261473	28261673	+	551.0	f1_c57bl6.idr	intron (NM_177906, intron 1 of 7)	intron (NM_177906, intron 1 of 7)	470304.0	NM_177906	330908.0	Mm.379474	NM_177906	ENSMUSG00000062257	Opcml	2900075O15Rik|3732419F12|AI844366|B930023M13Rik|C230027C17|Gm181|Obcam	opioid binding protein/cell adhesion molecule-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124256480-1	chr6	124256380	124256580	+	550.0	f1_c57bl6.idr	Intergenic	Intergenic	-24696.0	NM_001104642	232367.0	Mm.469872	NM_001104642	ENSMUSG00000072778	Vmn2r27	EG232367	vomeronasal 2, receptor27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-116972754-4	chr2	116972652	116972852	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	72600.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70432535-3	chr14	70432433	70432633	+	761.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-3439.0	NM_021308	57746.0	Mm.85253	NM_021308	ENSMUSG00000033644	Piwil2	Piwil1l|mili	piwi-like RNA-mediated gene silencing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56709106-2	chr17	56709006	56709206	+	946.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252467, intron 10 of 13)	intron (NM_001252467, intron 10 of 13)	7815.0	NM_178926	106639.0	Mm.37290	NM_178926	ENSMUSG00000054723	Vmac	AI662250	vimentin-type intermediate filament associated coiled-coil protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-36757255-4	chr5	36757153	36757353	+	765.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-8574.0	NM_133724	117197.0	Mm.46744	NM_133724	ENSMUSG00000060708	Bloc1s4	2610101N07Rik|Blos4|Cno	biogenesis of lysosomal organelles complex-1, subunit 4, cappuccino	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-127446752-4	chr6	127446658	127446858	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346513)	promoter-TSS (NM_001346513)	-82.0	NM_001346513	101187.0	Mm.110818	NM_181402	ENSMUSG00000037997	Parp11	5330431N24Rik|AI851877|ARTD11|HIN1L|PARP-11	poly (ADP-ribose) polymerase family, member 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-32403015-4	chr17	32402918	32403118	+	768.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029458)	promoter-TSS (NR_029458)	4.0	NR_029458	664702.0	Mm.381066	NR_029458		A530088E08Rik	-	RIKEN cDNA A530088E08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59439557-4	chr15	59439468	59439668	+	987.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164604, intron 3 of 4)	ORR1E|LTR|ERVL-MaLR	65370.0	NM_001164604	68501.0	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	3.33388093542155	2.73474194992295	2.4580774512483	3.51438453941412	4.2851598531835	3.97756861986603	3.07621334803505	4.01899742834806	1.24983919863459	0.0315800089985817	0.245399577697528
Merged-chr15-101239854-2	chr15	101239754	101239954	+	914.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-14668.0	NR_045328	380977.0	Mm.399924	NR_045326	ENSMUSG00000097915	A330009N23Rik	-	RIKEN cDNA A330009N23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5803671-4	chr19	5803557	5803757	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_002847)	promoter-TSS (NR_002847)	-985.0	NR_002847	72289.0	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124582300-2	chr5	124582200	124582400	+	633.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_181410, intron 1 of 12)	intron (NM_181410, intron 1 of 12)	3152.0	NM_181410	209357.0	Mm.185467	NM_181410	ENSMUSG00000029387	Gtf2h3	34kDa|5033417D07Rik|BTF2|BTF2 p34|C730029A10|D5Ertd679e|TFIIH	general transcription factor IIH, polypeptide 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65790268-3	chr9	65790157	65790357	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172536, intron 2 of 9)	intron (NM_172536, intron 2 of 9)	37307.0	NM_172536	214812.0	Mm.139231	NM_172536	ENSMUSG00000040524	Zfp609	9830165N24|BC016271|Znf609|mKIAA0295	zinc finger protein 609	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-89043065-3	chr6	89042963	89043163	+	995.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53047.0	NR_134978	232217.0	Mm.281744	NM_175017	ENSMUSG00000055403	4933427D06Rik	-	RIKEN cDNA 4933427D06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69396134-4	chr11	69396028	69396228	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001045525)	promoter-TSS (NM_001045525)	337.0	NM_030083	78304.0	Mm.45683	NM_030083	ENSMUSG00000059278	Naa38	1500034E06Rik|Lsmd1	N(alpha)-acetyltransferase 38, NatC auxiliary subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-31084094-1	chr5	31083994	31084194	+	787.0	f1_c57bl6.idr	Intergenic	Intergenic	9433.0	NM_011773	22784.0	Mm.1396	NM_011773	ENSMUSG00000029151	Slc30a3	Znt3	solute carrier family 30 (zinc transporter), member 3	protein-coding	1.07070631650959	1.37965475945921	1.95664128822645	0.904384798459467	0.883220875470194	1.70560176022797	1.97413107615313	1.70423823761812	0.724899852615925	0.573174394239588	0.964496317550327
Merged-chr1-136675108-4	chr1	136675003	136675203	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(A)n|Simple_repeat|Simple_repeat	-8293.0	NR_045324	100503460.0	Mm.30630	NR_045324	ENSMUSG00000097113	Gm19705	-	predicted gene, 19705	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-40953416-4	chr13	40953314	40953514	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133219, intron 1 of 2)	MER20|DNA|hAT-Charlie	35780.0	NM_133219	14538.0	Mm.314757	NM_008105	ENSMUSG00000021360	Gcnt2	5330430K10Rik|IGnT|IGnTA|IGnTB|IGnTC	glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-80855225-4	chr5	80855110	80855310	+	954.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-165361.0	NM_001347367	319387.0	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	2.39527236565771	2.32399614347555	1.29404245858975	1.26243286716296	1.53846814677216	2.0184302837855	1.05846199578979	1.61822635948132	-0.946743269499923	0.403633776026428	0.888897182593852
Merged-chr2-150909723-4	chr2	150909619	150909819	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001163476, exon 1 of 5)	exon (NM_001163476, exon 1 of 5)	125.0	NM_001163476	69270.0	Mm.271603	NM_027014	ENSMUSG00000027454	Gins1	2810418N01Rik|Gins4|PSF1|mKIAA0186	GINS complex subunit 1 (Psf1 homolog)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91978178-2	chr2	91978098	91978298	+	659.416626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-14635.0	NM_138306	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-11144931-2	chr16	11144831	11145031	+	586.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_027502, intron 19 of 22)	intron (NR_027502, intron 19 of 22)	-10399.0	NM_029582	106200.0	Mm.291015	NM_029582	ENSMUSG00000022498	Txndc11	2810408E11Rik|AI427833|EFP1|Txdc11	thioredoxin domain containing 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94545682-4	chr10	94545586	94545786	+	976.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172051, intron 1 of 3)	intron (NM_172051, intron 1 of 3)	-5186.0	NM_001359761	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-60774528-4	chr18	60774447	60774647	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020600)	promoter-TSS (NM_020600)	-49.0	NM_020600	20044.0	Mm.43778	NM_020600	ENSMUSG00000024608	Rps14	2600014J02Rik|AL023078	ribosomal protein S14	protein-coding	7.10609546421729	6.24391645033331	7.85320019318404	6.85655624262998	7.0933134773002	6.43922858327347	7.60042921447101	6.97590525126658	-0.049447931405981	0.906782665538683	0.998431161219273
Merged-chr14-60663481-2	chr14	60663381	60663581	+	582.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033272, intron 1 of 12)	L2a|LINE|L2	28776.0	NM_001033272	219140.0	Mm.149776	NM_001033272	ENSMUSG00000021990	Spata13	C79050|ESTM11|X83327|mFLJ00298	spermatogenesis associated 13	protein-coding	-1.50874880059862	-1.47511716453926	-1.4852876488768	-1.49364198752927	-1.50638792193216	-0.992828729615453	-1.48298527415345	-1.4921465649048	2.3185461113984	0.50391666537493	1
Merged-chr13-36116866-3	chr13	36116767	36116967	+	651.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024274)	promoter-TSS (NM_024274)	490.0	NM_201358	380840.0	Mm.390576	NM_201358	ENSMUSG00000046573	Lyrm4	BC034664|Gm903	LYR motif containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70872893-2	chr8	70872795	70872995	+	725.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026964, intron 1 of 4)	PB1D10|SINE|Alu	595.0	NM_026964	234388.0	Mm.295791	NM_026964	ENSMUSG00000007721	Ccdc124	1810023B24Rik	coiled-coil domain containing 124	protein-coding	0.586999808494085	0.832093302086584	0.608988240207177	1.29113718698019	1.21995516536643	1.16720263155717	1.35351649261535	0.602224266476812	1.14575824843765	0.469654068076412	0.925226403981837
Merged-chr3-107760287-4	chr3	107760199	107760399	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001113530, exon 1 of 9)	5' UTR (NM_001113530, exon 1 of 9)	170.0	NM_001113530	12977.0	Mm.795	NM_007778	ENSMUSG00000014599	Csf1	C87615|Csfm|MCSF|op	colony stimulating factor 1 (macrophage)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-56701000-4	chr18	56700892	56701092	+	946.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6821.0	NM_010721	16906.0	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-32207058-4	chr12	32206960	32207160	+	838.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146200, intron 1 of 10)	intron (NM_001146200, intron 1 of 10)	1278.0	NM_001146201	30955.0	Mm.101369	NM_020272	ENSMUSG00000020573	Pik3cg	5830428L06Rik|PI3Kgamma|p110gamma	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding	-0.36660901368241	-0.709186507887793	-0.712065056118845	-0.314079710060155	-0.717380139855903	-0.708535378847997	-0.711431585645816	-0.557679752339148	-2.10533016975845	0.446067509942782	1
Merged-chr2-11741188-2	chr2	11741088	11741288	+	658.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	35476.0	NM_001271500	16169.0	Mm.200196	NM_008358	ENSMUSG00000023206	Il15ra	AA690181|IL-15RA	interleukin 15 receptor, alpha chain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-53364062-2	chr18	53363962	53364162	+	585.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029394, intron 3 of 6)	intron (NM_029394, intron 3 of 6)	53945.0	NM_008908	19038.0	Mm.4587	NM_008908	ENSMUSG00000024538	Ppic	CyP-20c	peptidylprolyl isomerase C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-57793153-4	chr10	57793051	57793251	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1393.0	NM_020561	57319.0	Mm.2379	NM_020561	ENSMUSG00000019872	Smpdl3a	0610010C24Rik|AI529588|ASM3A|ASML3|ASML3A	sphingomyelin phosphodiesterase, acid-like 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-121184689-3	chr3	121184578	121184778	+	968.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12983.0	NM_025637	66568.0	Mm.263163	NM_025637	ENSMUSG00000028133	Rwdd3	2510027J23Rik|3110037C01Rik|AI035684|AI662458|Rsume|X2CR1	RWD domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-53464304-3	chr3	53464229	53464429	+	880.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173382, intron 1 of 12)	intron (NM_173382, intron 1 of 12)	512.0	NM_173382	212127.0	Mm.491292	NM_173382	ENSMUSG00000049504	Proser1	2810046L04Rik|9330161F11	proline and serine rich 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-37644256-4	chr18	37644176	37644376	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175770)	promoter-TSS (NM_175770)	-72.0	NM_175770	24074.0	Mm.236009	NM_175770	ENSMUSG00000051316	Taf7	55kDa|AI607308|BB007175|TAFII55|Taf2f	TATA-box binding protein associated factor 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3692988-4	chr4	3692890	3693090	+	974.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 1 of 12)	ORR1G|LTR|ERVL-MaLR	14869.0	NM_010747	17096.0	Mm.317331	NM_010747	ENSMUSG00000042228	Lyn	AA407514|Hck-2|p53Lyn|p56Lyn	LYN proto-oncogene, Src family tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-74452911-2	chr1	74452811	74453011	+	845.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_176972, intron 20 of 25)	intron (NM_176972, intron 20 of 25)	43527.0	NM_009509	22349.0	Mm.471601	NM_009509	ENSMUSG00000026175	Vil1	Vil	villin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-20493580-4	chr9	20493506	20493706	+	818.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001110309)	promoter-TSS (NM_001110309)	-860.0	NM_001110309	235028.0	Mm.297660	NM_146221	ENSMUSG00000059475	Zfp426	2900057C04Rik|KRAB1|Zfo61|Zfp68-rs1|Znf426|mKIAA4237	zinc finger protein 426	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46470197-2	chr8	46470097	46470297	+	619.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007981)	promoter-TSS (NM_007981)	-840.0	NM_007981	14081.0	Mm.210323	NM_007981	ENSMUSG00000018796	Acsl1	Acas|Acas1|Acs|FACS|Facl2|LACS 1|LACS1	acyl-CoA synthetase long-chain family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-114193885-4	chr7	114193798	114193998	+	883.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60782.0	NM_033370	70349.0	Mm.277024	NM_033370	ENSMUSG00000030754	Copb1	2610019B04Rik	coatomer protein complex, subunit beta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-25052127-4	chr8	25052016	25052216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031257, intron 10 of 11)	intron (NM_031257, intron 10 of 11)	-13154.0	NM_001081187	330723.0	Mm.334452	NM_001081187	ENSMUSG00000037406	Htra4	B430206E18Rik	HtrA serine peptidase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-125567879-1	chr8	125567779	125567979	+	605.0	f1_balb.idr	intron (NM_001357372, intron 1 of 21)	intron (NM_001357372, intron 1 of 21)	1984.0	NM_001357372	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	1.60114926241339	0.986630305686827	1.88910238390965	0.940485655399449	0.910186192610444	1.68100737947499	2.62274627396383	2.24121641018662	1.63074284990004	0.192582786821661	0.67098611029804
Merged-chr2-129310023-4	chr2	129309929	129310129	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010554)	promoter-TSS (NM_010554)	-57.0	NM_010554	16175.0	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-149308824-2	chr4	149308724	149308924	+	681.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1091.0	NM_001290995	16561.0	Mm.402393	NM_008441	ENSMUSG00000063077	Kif1b	A530096N05Rik|AI448212|AI506502|D4Mil1e|KIF1Bp130|KIF1Bp204	kinesin family member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-36252189-2	chr8	36252092	36252292	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2676.0	NM_001081150	244421.0	Mm.324032	NM_001081150	ENSMUSG00000039633	Lonrf1	-	LON peptidase N-terminal domain and ring finger 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-105789680-2	chr1	105789580	105789780	+	772.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009399, intron 1 of 9)	B4A|SINE|B4	8957.0	NM_009399	21934.0	Mm.6251	NM_009399	ENSMUSG00000026321	Tnfrsf11a	Ly109|ODFR|OFE|Rank|TRANCE-R|mRANK	tumor necrosis factor receptor superfamily, member 11a, NFKB activator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-102589022-2	chr10	102588922	102589122	+	651.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4A|LINE|L1	76800.0	NM_146240	237504.0	Mm.282672	NM_146240	ENSMUSG00000044921	Rassf9	AW322107|Pamci	Ras association (RalGDS/AF-6) domain family (N-terminal) member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-36236603-4	chr2	36236507	36236707	+	918.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008969, intron 2 of 10)	intron (NM_008969, intron 2 of 10)	6181.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-57215714-4	chr16	57215566	57215766	+	918.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026254, intron 2 of 17)	intron (NM_026254, intron 2 of 17)	-14195.0	NM_001358434	67581.0	Mm.257819	NM_026254	ENSMUSG00000022749	Tbc1d23	4930451A13Rik|AU015720|AU043671|AU043778|D030022P07Rik|W51689	TBC1 domain family, member 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6856921-4	chr19	6856828	6857028	+	940.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081291, exon 6 of 27)	exon (NM_001081291, exon 6 of 27)	1283.0	NM_001081291	78317.0	Mm.329596	NM_198008	ENSMUSG00000047810	Ccdc88b	2610041P08Rik|Ccdc88	coiled-coil domain containing 88B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-150840815-4	chr5	150840709	150840909	+	957.474976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-111798.0	NM_013823	16591.0	Mm.6500	NM_013823	ENSMUSG00000058488	Kl	alpha-kl	klotho	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-29675651-4	chr19	29675538	29675738	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22303.0	NM_029993	77836.0	Mm.138437	NM_029993	ENSMUSG00000024806	Mlana	A930034P04Rik|Mart1	melan-A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-174069825-4	chr2	174069718	174069918	+	799.299988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7233.0	NM_172675	228960.0	Mm.277977	NM_172675	ENSMUSG00000027522	Stx16	4930401D03|5430410K23Rik|6330500A18Rik|AI648908|AW553605|Syn16	syntaxin 16	protein-coding	-0.961808289013217	-0.941143281918953	-0.953353259954851	-0.9565109400711	-0.961015840561242	-0.938024035002784	0.030272756003758	-0.955957512668286	3.38343409954699	0.275427317743097	1
Merged-chr3-107696636-4	chr3	107696554	107696754	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357112)	promoter-TSS (NM_001357112)	-94.0	NM_145542	229709.0	Mm.220328	NM_145542	ENSMUSG00000027893	Ahcyl1	1110034F20Rik|AA409031|AA414901|Ahcy-rs3|DCAL|Irbit	S-adenosylhomocysteine hydrolase-like 1	protein-coding	6.07167217575824	5.91357094199653	6.05358496903706	5.68507843500654	5.67119280743713	5.89938516490617	5.63169825031118	5.86187997677943	-0.191453371668599	0.422558323343784	0.900322118218157
Merged-chr2-167754888-3	chr2	167754812	167755012	+	996.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	63735.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-102605163-1	chr4	102605063	102605263	+	551.0	f0_balb.idr	exon (NM_001177980, exon 10 of 10)	exon (NM_001177980, exon 10 of 10)	15320.0	NM_001177981	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-31223832-2	chr15	31223732	31223932	+	882.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146057)	promoter-TSS (NM_146057)	-553.0	NM_146057	223453.0	Mm.222867	NM_146057	ENSMUSG00000039168	Dap	4921531N22Rik|AI789753|AU040360	death-associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27242306-1	chr17	27242206	27242406	+	807.0	f0_balb.idr	intron (NR_131118, intron 1 of 2)	intron (NR_131118, intron 1 of 2)	5760.0	NR_131118	319720.0	Mm.394996	NR_131118		9630028I04Rik	-	RIKEN cDNA 9630028I04 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-90073851-2	chr3	90073751	90073951	+	670.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_022314, intron 2 of 8)	intron (NM_022314, intron 2 of 8)	1200.0	NM_022314	59069.0	Mm.240839	NM_022314	ENSMUSG00000027940	Tpm3	TM30nm|TMnm|Tm5NM|Tpm-5|Tpm5|Trop-5|gamma-TM|hTM30nm|hTMnm	tropomyosin 3, gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-3413327-2	chr7	3413227	3413427	+	918.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133190, intron 3 of 3)	intron (NM_133190, intron 3 of 3)	-1739.0	NR_128566	104795667.0		NR_128566	ENSMUSG00000094210	Gm23450	Mir935|mmu-mir-935	predicted gene, 23450	ncRNA	-0.502391301462883	-1.04039839995914	-0.87744965639752	-1.05707889926824	-1.05990250840192	-1.03792484783103	-1.04922884438895	-1.0567292829056	-2.76361452834743	0.383169958961135	1
Merged-chr18-12956188-3	chr18	12956098	12956298	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14357.0	NM_207530	64291.0	Mm.259470	NM_020573	ENSMUSG00000044252	Osbpl1a	G430090F17Rik|Gm753|ORP-1|Osbpl1b	oxysterol binding protein-like 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101503567-4	chr7	101503478	101503678	+	861.633301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001008548, intron 14 of 30)	intron (NM_001008548, intron 14 of 30)	28202.0	NR_029791	387157.0		NR_029791	ENSMUSG00000065446	Mir139	Mirn139|mir-139|mmu-mir-139	microRNA 139	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52621573-2	chr13	52621473	52621673	+	895.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011518, intron 4 of 13)	intron (NM_011518, intron 4 of 13)	24691.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59747458-2	chr15	59747358	59747558	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47501.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117866336-4	chr10	117866229	117866429	+	963.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20355.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-144644319-2	chr6	144644219	144644419	+	668.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28549.0	NR_040519	66760.0	Mm.233631	NR_040519	ENSMUSG00000085785	Sox5os3	4933425H06Rik	SRY (sex determining region Y)-box 5, opposite strand 3	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-3723979-4	chr2	3723911	3724111	+	788.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025626, intron 1 of 3)	intron (NM_025626, intron 1 of 3)	10553.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-105799118-5	chr3	105799031	105799231	+	815.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145541, intron 1 of 7)	intron (NM_145541, intron 1 of 7)	2250.0	NM_145541	109905.0	Mm.101922	NM_145541	ENSMUSG00000068798	Rap1a	AI848598|G-22K|Krev-1|Rap1	RAS-related protein 1a	protein-coding	-1.06997269762433	-1.30473905204845	-1.3145270772132	-1.32256725251374	-1.06385251204029	-1.30261794616352	-1.3123112828633	-1.32112806497905	0.0394047164033882	0.991001358494878	1
Merged-chr19-14630930-1	chr19	14630830	14631030	+	568.0	f0_c57.idr	Intergenic	RLTR10D|LTR|ERVK	-32747.0	NM_001302947	21888.0	Mm.103638	NM_011600	ENSMUSG00000024642	Tle4	5730411M05Rik|AA792082|Bce-1|Bce1|ESTM13|ESTM14|Grg4|X83332|X83333|grg-4	transducin-like enhancer of split 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80095886-3	chr7	80095816	80096016	+	720.285706	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173011, intron 8 of 10)	intron (NM_173011, intron 8 of 10)	19434.0	NM_173011	269951.0	Mm.246432	NM_173011	ENSMUSG00000030541	Idh2	E430004F23|IDPm|Idh-2	isocitrate dehydrogenase 2 (NADP+), mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88532922-2	chr3	88532822	88533022	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001029890, intron 1 of 1)	CpG	527.0	NM_001029890	72640.0	Mm.275154	NM_001029890	ENSMUSG00000074480	Mex3a	2700083E18Rik|Gm411|Rkhd4	mex3 RNA binding family member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-41647067-2	chr15	41646967	41647167	+	846.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_152565, intron 2 of 17)	intron (NR_152565, intron 2 of 17)	-141928.0	NM_001358976	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-27743504-3	chr3	27743405	27743605	+	766.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33053.0	NM_173182	72007.0	Mm.38832	NM_173182	ENSMUSG00000039286	Fndc3b	1600019O04Rik|AW550168|Fad104|mKIAA4164	fibronectin type III domain containing 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-90101246-1	chr3	90101146	90101346	+	642.0	f1_c57bl6.idr	TTS (NM_022314)	TTS (NM_022314)	-2886.0	NM_029937	77595.0	Mm.159949	NM_029937	ENSMUSG00000027939	Nup210l	4930548O11Rik|R26-EGFP|Tg(Gt(ROSA)26Sor-EGFP)130910Eps	nucleoporin 210-like	protein-coding	-0.865326703316383	-0.849971874135937	0.280665258210813	-0.858864759381203	-0.86435674098481	-0.848731039658829	-0.853951331253819	-0.858192605091486	-3.66751939073779	0.204629335831286	1
Merged-chr15-68415801-1	chr15	68415701	68415901	+	719.0	f1_c57bl6.idr	Intergenic	Intergenic	-74512.0	NR_029718	387228.0		NR_029718	ENSMUSG00000065437	Mir30d	Mirn30d|mir-30d|mmu-mir-30d	microRNA 30d	ncRNA	-2.18138529563533	-2.15523716995652	-2.1631445789866	-2.16963996020037	-2.05513010215571	-2.15352360143315	-2.16135451490766	-2.16847729006863	0.759018020146679	0.829933115115583	1
Merged-chr1-132308786-1	chr1	132308686	132308886	+	541.0	f1_balb.idr	Intergenic	Intergenic	-7339.0	NM_001195025	74137.0	Mm.100666	NM_028778	ENSMUSG00000009772	Nuak2	1200013B22Rik|Omphk2|Snark|mKIAA0537	NUAK family, SNF1-like kinase, 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-66856753-4	chr9	66856687	66856887	+	740.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173413, intron 3 of 7)	B1_Mur1|SINE|Alu	-22081.0	NM_026674	68318.0	Mm.284229	NM_026674	ENSMUSG00000053040	Aph1c	0610008A10Rik|APH-1b|Aph1b	aph1 homolog C, gamma secretase subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-27766249-4	chr3	27766146	27766346	+	962.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55794.0	NM_173182	72007.0	Mm.38832	NM_173182	ENSMUSG00000039286	Fndc3b	1600019O04Rik|AW550168|Fad104|mKIAA4164	fibronectin type III domain containing 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-80684069-3	chr17	80683974	80684174	+	840.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360278, intron 1 of 33)	intron (NM_001360278, intron 1 of 33)	43951.0	NM_001360278	225028.0	Mm.311948	NM_001081357	ENSMUSG00000024242	Map4k3	4833416M01Rik|4833416M07Rik|9530052P13Rik|Glk|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1	mitogen-activated protein kinase kinase kinase kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-113051490-2	chr12	113051390	113051590	+	861.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081170, intron 7 of 23)	intron (NM_001081170, intron 7 of 23)	-23012.0	NM_001361919	75671.0	Mm.23377	NM_029381	ENSMUSG00000012211	Tex22	1700028O09Rik|AV210422|Tep22	testis expressed gene 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-42049617-4	chr13	42049514	42049714	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2407.0	NM_007772	110521.0	Mm.4808	NM_007772	ENSMUSG00000021366	Hivep1	Cryabp1	human immunodeficiency virus type I enhancer binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30802106-2	chr2	30802006	30802206	+	604.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198000)	promoter-TSS (NM_198000)	-369.0	NM_198000	73598.0	Mm.34166	NM_198000	ENSMUSG00000044320	1700001O22Rik	1700113K14Rik|4930549G18Rik	RIKEN cDNA 1700001O22 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-16920276-3	chr12	16920153	16920353	+	729.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009072, intron 1 of 32)	L2a|LINE|L2	25275.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-86561325-2	chr11	86561225	86561425	+	670.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001199047, exon 7 of 9)	exon (NM_001199047, exon 7 of 9)	16334.0	NM_001199046	56427.0	Mm.383207	NM_019756	ENSMUSG00000020513	Tubd1	4930550G19Rik|Tubd	tubulin, delta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-21039534-4	chr5	21039420	21039620	+	943.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011203, intron 1 of 17)	CYRA11_Mm|Unknown|Y-chromosome	-4273.0	NM_001356590	19248.0	Mm.319117	NM_011203	ENSMUSG00000028771	Ptpn12	P19-PTP|PTP-P19|PTP-PEST|PTPG1	protein tyrosine phosphatase, non-receptor type 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-142757266-4	chr6	142757155	142757355	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009908, intron 1 of 7)	intron (NM_009908, intron 1 of 7)	569.0	NM_009908	12764.0	Mm.3820	NM_009908	ENSMUSG00000030282	Cmas	AW208911|CMPNeu5Ac|D6Bwg0250e	cytidine monophospho-N-acetylneuraminic acid synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116641418-2	chr11	116641318	116641518	+	661.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12895.0	NM_030206	114886.0	Mm.34598	NM_030206	ENSMUSG00000020810	Cygb	3110001K20Rik|HGb|Staap	cytoglobin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-152225574-2	chr2	152225474	152225674	+	550.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1266.0	NM_007788	12995.0	Mm.23692	NM_007788	ENSMUSG00000074698	Csnk2a1	CK2|Csnk2a1-rs4	casein kinase 2, alpha 1 polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75644447-2	chr11	75644347	75644547	+	773.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_008916, intron 7 of 11)	intron (NM_008916, intron 7 of 11)	-7062.0	NM_008659	17913.0	Mm.234502	NM_008659	ENSMUSG00000017774	Myo1c	C80397|MMIb|MYO1E|NMI|mm1beta|myr2	myosin IC	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-19316362-4	chr2	19316258	19316458	+	983.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17A-int|LTR|ERVK	-27959.0	NR_126563	108871.0	Mm.107666	NR_126563		4930447M23Rik	-	RIKEN cDNA 4930447M23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-57409883-4	chr17	57409762	57409962	+	979.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355722, intron 7 of 22)	intron (NM_001355722, intron 7 of 22)	51176.0	NM_010130	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-84412803-4	chr10	84412715	84412915	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004363, intron 1 of 6)	intron (NM_001004363, intron 1 of 6)	27656.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-152756226-2	chr2	152756126	152756326	+	763.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_053091, intron 2 of 4)	intron (NM_053091, intron 2 of 4)	2053.0	NM_053091	84682.0	Mm.196668	NM_053091	ENSMUSG00000009876	Cox4i2	Cox4b|CoxIV-2	cytochrome c oxidase subunit 4I2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-23676765-4	chr17	23676650	23676850	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013749, intron 1 of 3)	CpG	699.0	NM_001161746	27279.0	Mm.28518	NM_013749	ENSMUSG00000023905	Tnfrsf12a	AI255180|C87282|Fn14|HPIP|TWEAK-R|TweakR	tumor necrosis factor receptor superfamily, member 12a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-70643846-4	chr13	70643733	70643933	+	861.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6199.0	NM_144837	218333.0	Mm.139738	NM_144837	ENSMUSG00000034525	Ice1	C77245|mKIAA0947	interactor of little elongation complex ELL subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-60817492-4	chr2	60817394	60817594	+	905.1749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001141932, intron 2 of 14)	intron (NM_001141932, intron 2 of 14)	63944.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76518968-2	chr15	76518868	76519068	+	719.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_130893, exon 2 of 2)	exon (NM_130893, exon 2 of 2)	3161.0	NM_130893	170729.0	Mm.218747	NM_130893	ENSMUSG00000048385	Scrt1	-	scratch family zinc finger 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-150844926-4	chr2	150844789	150844989	+	960.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151505, intron 4 of 12)	intron (NR_151505, intron 4 of 12)	-2319.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128459914-2	chr10	128459814	128460014	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114097, intron 1 of 27)	intron (NM_001114097, intron 1 of 27)	678.0	NM_001114097	68094.0	Mm.417338	NM_198160	ENSMUSG00000025369	Smarcc2	5930405J04Rik	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-46516040-7	chr18	46515945	46516145	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173423, intron 2 of 2)	L1MB8|LINE|L1	9926.0	NM_173423	240263.0	Mm.38249	NM_173423	ENSMUSG00000033319	Fem1c	2610312A07Rik|3632443A22Rik|AI646567	fem-1 homolog c (C.elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-35337350-1	chr11	35337250	35337450	+	542.0	f1_c57bl6.idr	intron (NM_011412, intron 4 of 35)	intron (NM_011412, intron 4 of 35)	215894.0	NM_011412	20564.0	Mm.478604	NM_011412	ENSMUSG00000056427	Slit3	Slil2|Slit1|b2b2362.1Clo	slit guidance ligand 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-118534119-4	chr2	118534000	118534200	+	886.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001331221, intron 3 of 3)	intron (NM_001331221, intron 3 of 3)	10487.0	NR_138603	171543.0	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	1.73488723883785	1.73212124251259	1.2073098928799	1.73404568732698	1.91726418462577	1.01227540644462	1.80289047655569	0.979717675405673	-0.339063121583532	0.784829945644983	0.998431161219273
Merged-chr18-75372008-2	chr18	75371908	75372108	+	781.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001042660, intron 2 of 3)	intron (NM_001042660, intron 2 of 3)	4643.0	NM_001042660	17131.0	Mm.34407	NM_008543	ENSMUSG00000025880	Smad7	Madh7	SMAD family member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-95451955-2	chr1	95451846	95452046	+	688.233337	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	138318.0	NM_026321	67698.0	Mm.272705	NM_026321	ENSMUSG00000051185	Fam174a	2310044D20Rik|Fam174|Naa6|Tmem157	family with sequence similarity 174, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-156560646-4	chr1	156560518	156560718	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001136104, intron 1 of 12)	intron (NM_001136104, intron 1 of 12)	1831.0	NM_001136104	11352.0	Mm.329515	NM_009595	ENSMUSG00000026596	Abl2	AA536808|Abll|Arg	v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)	protein-coding	4.79441754172177	4.86145956636157	3.94159014879642	5.30753771417062	4.32854498692498	3.76234740564407	3.41996896402949	4.17719997970837	-1.06878961444749	0.015224920621692	0.146839708696994
Merged-chr5-28065679-4	chr5	28065544	28065744	+	795.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-5768.0	NM_153526	231070.0	Mm.30221	NM_153526	ENSMUSG00000045294	Insig1	1810013C12Rik|Insig-1	insulin induced gene 1	protein-coding	1.40314982190716	0.609217459786589	0.593204568820006	1.14417255951969	1.20572660024054	2.10239796182494	0.596776216012539	0.582760136827414	1.08589536018279	0.491136406899873	0.934429742421156
Merged-chr10-8876860-1	chr10	8876760	8876960	+	628.333313	f1_balb.idr	intron (NM_175155, intron 1 of 19)	B3|SINE|B2	9210.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	1.4627500669369	1.35169569478335	1.30513829673271	0.877872301804587	1.47604372053387	1.36199856452999	2.33509321454926	1.09635478529386	1.35190520120639	0.267498775368442	0.770194930470086
Merged-chr11-86816393-2	chr11	86816293	86816493	+	904.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR6_Mm|LTR|ERV1	-8733.0	NM_026191	67487.0	Mm.260627	NM_026191	ENSMUSG00000018425	Dhx40	2410016C14Rik|ARG147|DDX40|PAD	DEAH (Asp-Glu-Ala-His) box polypeptide 40	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-6317482-4	chr17	6317389	6317589	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166629)	promoter-TSS (NM_001166629)	-15.0	NM_001166629	100310872.0	Mm.381893	NM_001166629	ENSMUSG00000092074	Dynlt1a	-	dynein light chain Tctex-type 1A	protein-coding	6.04790163451407	5.64937454945699	6.11664844397161	5.49149352650231	6.15860386127331	6.13821914823137	5.66362523954362	5.94734691667074	0.152544354202541	0.543945049611818	0.955588703284868
Merged-chr5-124861712-2	chr5	124861616	124861816	+	565.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081750)	promoter-TSS (NM_001081750)	505.0	NM_144819	215707.0	Mm.389693	NM_144819	ENSMUSG00000037979	Ccdc92	AW050178|D5Bwg0834e	coiled-coil domain containing 92	protein-coding	1.6315264076523	2.63512714913626	0.834169798627846	0.813158023967685	0.782015426113394	0.866013479694	2.15601446453709	1.97863957837473	-0.32957947664849	0.891098016054044	0.998431161219273
Merged-chr11-70700261-4	chr11	70700157	70700357	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252485)	promoter-TSS (NM_001252485)	-102.0	NM_001252485	103844.0	Mm.101581	NM_213729	ENSMUSG00000057054	Inca1	AI842396	inhibitor of CDK, cyclin A1 interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-97705497-3	chr1	97705387	97705587	+	772.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_173760)	TTS (NM_173760)	-43469.0	NM_133825	52392.0	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-47215104-4	chr13	47215022	47215222	+	997.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146042, intron 2 of 7)	intron (NM_146042, intron 2 of 7)	21119.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-80169822-4	chr11	80169731	80169931	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172133, intron 6 of 10)	B3|SINE|B2	-14041.0	NM_028019	71956.0	Mm.22985	NM_028019	ENSMUSG00000020707	Rnf135	0610037N03Rik|2410006N06Rik	ring finger protein 135	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-152114433-2	chr2	152114333	152114533	+	722.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8909.0	NM_029688	76650.0	Mm.218639	NM_029688	ENSMUSG00000032802	Srxn1	1700127B04Rik|AI854065|AW488194|Npn3|Srx|Srx1|TX01	sulfiredoxin 1 homolog (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-3742583-6	chr13	3742507	3742707	+	835.361084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(GA)n|Simple_repeat|Simple_repeat	61711.0	NM_027416	70405.0	Mm.20079	NM_027416	ENSMUSG00000063130	Calml3	2310068O22Rik|AI326174	calmodulin-like 3	protein-coding	2.81111175976354	2.79041212777301	3.32612971084657	2.85955631156524	3.54470622160287	3.28232901401171	3.7635209728512	2.4864574565144	0.655666961762039	0.30118171267293	0.802503830838662
Merged-chr3-55333750-3	chr3	55333655	55333855	+	868.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357475, intron 3 of 16)	intron (NM_001357475, intron 3 of 16)	91391.0	NM_001357466	13175.0	Mm.393242	NM_019978	ENSMUSG00000027797	Dclk1	1700113D08Rik|2810480F11Rik|AI836758|Click-I|Cpg16|Dcamkl1|Dcl|Dclk|mKIAA0369	doublecortin-like kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135710205-2	chr5	135710105	135710305	+	781.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_008898, intron 1 of 15)	MTD|LTR|ERVL-MaLR	21060.0	NM_008898	18984.0	Mm.3863	NM_008898	ENSMUSG00000005514	Por	4933424M13Rik|CPR|CYPOR|P450R	P450 (cytochrome) oxidoreductase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-140958978-2	chr4	140958878	140959078	+	661.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1076.0	NR_045911	100126227.0	Mm.404073	NR_045911	ENSMUSG00000087698	Gm13031	-	predicted gene 13031	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-160213317-3	chr2	160213239	160213439	+	786.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1G1|LTR|ERVL-MaLR	114155.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-17277489-2	chr16	17277389	17277589	+	640.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177473, intron 6 of 9)	CpG-5550	1189.0	NM_177473	224019.0	Mm.246388	NM_177473	ENSMUSG00000055692	Tmem191c	4933405M22Rik|D16Bwg1494e|MNCb-4137	transmembrane protein 191C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-57423143-4	chr16	57423016	57423216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 1 of 4)	PB1D11|SINE|Alu	69839.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	1.82597421791269	1.92426935890245	1.56631201432864	1.14089182422265	2.32492336351743	1.79359868831457	1.99598532193035	1.68540095493635	0.972674681839281	0.355737194146296	0.853664850644233
Merged-chr6-97292164-2	chr6	97292065	97292265	+	577.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 23 of 23)	MER58A|DNA|hAT-Charlie	-39385.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	2.65176334630942	2.89546867860788	1.354559839229	2.51803939605515	1.26825821702675	2.81841956842344	2.22713286003812	3.22969563745483	0.220993405143928	0.819302391651576	0.998431161219273
Merged-chr4-53087420-2	chr4	53087320	53087520	+	902.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 11 of 49)	intron (NM_013454, intron 11 of 49)	72475.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150582632-1	chr4	150582532	150582732	+	584.0	f0_balb.idr	intron (NM_001085492, intron 12 of 22)	B1_Mus2|SINE|Alu	69542.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0.809521152278098	1.09064519415404	0.660570324897744	1.66439329137254	0.815581799745411	1.09997925027364	0.66347726138082	1.67536237924281	0.0320641762740756	0.982507843439148	0.998431161219273
Merged-chr1-106311141-2	chr1	106311041	106311241	+	752.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133821, intron 3 of 16)	Lx2|LINE|L1	139272.0	NM_133821	98432.0	Mm.24115	NM_133821	ENSMUSG00000044340	Phlpp1	AI836256|Phlpp|Plekhe1|SCOP|mKIAA0606	PH domain and leucine rich repeat protein phosphatase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-152905997-4	chr3	152905885	152906085	+	827.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012028, intron 2 of 4)	intron (NM_012028, intron 2 of 4)	76222.0	NM_012028	26938.0	Mm.40915	NM_012028	ENSMUSG00000039037	St6galnac5	AI851940|Siat7e	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	protein-coding	1.97025425228565	2.5385587551198	1.73039102884811	3.47399177804882	2.77052252656764	2.40836987416371	2.3255144340633	3.26917823466984	0.226082618781715	0.785441208739951	0.998431161219273
Merged-chr5-73548397-4	chr5	73548303	73548503	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001190733, intron 8 of 9)	intron (NM_001190733, intron 8 of 9)	57377.0	NM_178896	100737.0	Mm.220312	NM_178896	ENSMUSG00000051674	Dcun1d4	AI836376	DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83665469-2	chr11	83665369	83665569	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_013652)	TTS (NM_013652)	2885.0	NM_013652	20303.0	Mm.244263	NM_013652	ENSMUSG00000018930	Ccl4	AT744.1|Act-2|MIP-1B|Mip1b|Scya4	chemokine (C-C motif) ligand 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-107905509-2	chr13	107905409	107905609	+	727.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15445.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67645115-2	chr10	67645015	67645215	+	910.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73156.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-31208355-4	chr7	31208269	31208469	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	46011.0	NR_046062	100038516.0	Mm.387223	NR_046062	ENSMUSG00000100985	Gm10640	EG668322	predicted gene 10640	ncRNA	-0.513962567638551	-0.155597178240089	0.0501164031627191	-0.509348303586599	-0.513277241310746	-0.30899753949312	-0.50576259343835	-0.508861741606703	-2.41318184512599	0.354154556473036	1
Merged-chr2-84494296-3	chr2	84494205	84494405	+	737.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER20|DNA|hAT-Charlie	12568.0	NR_046046	672763.0	Mm.491046	NR_046046	ENSMUSG00000087362	Gm13710	-	predicted gene 13710	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-40489552-2	chr10	40489452	40489652	+	760.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-80810.0	NM_027572	70840.0	Mm.332570	NM_027572	ENSMUSG00000019834	Slc22a16	4921504E14Rik|CT2|FLIPT2|OCT6|OKB1	solute carrier family 22 (organic cation transporter), member 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165956490-4	chr2	165956390	165956590	+	896.19165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36147.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35172649-4	chr17	35172550	35172750	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001361501, exon 3 of 8)	5' UTR (NM_001361501, exon 3 of 8)	3402.0	NM_019467	11629.0	Mm.10747	NM_019467	ENSMUSG00000024397	Aif1	AI607846|AIF-1|D17H6S50E|G1|Iba1	allograft inflammatory factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132566873-2	chr4	132566773	132566973	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081211, intron 1 of 1)	intron (NM_001081211, intron 1 of 1)	2806.0	NM_001081211	19204.0	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-50114273-2	chr15	50114173	50114373	+	617.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	774776.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	1.82808325543092	1.86347169575145	1.13626815428245	2.52611604768451	1.74964782425445	0.91338042067001	0.890876163797236	0.870982204329689	-2.34751282855795	0.0730942794154224	0.408406627332927
Merged-chr5-41708348-4	chr5	41708246	41708446	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310589)	promoter-TSS (NM_001310589)	-167.0	NM_001310590	100972.0	Mm.41555	NM_027295	ENSMUSG00000029128	Rab28	2700023P08Rik|AW496496	RAB28, member RAS oncogene family	protein-coding	5.23025273260131	4.16918760277014	4.80937283715611	3.68680844173537	3.93574698171305	4.62662070275838	4.58349653279915	4.07043743329396	-0.356352027415971	0.427270864711952	0.902392427013133
Merged-chr2-157077734-4	chr2	157077641	157077841	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164663, intron 1 of 14)	intron (NM_001164663, intron 1 of 14)	1524.0	NM_001164663	320706.0	Mm.79466	NM_001164663	ENSMUSG00000055485	Soga1	9830001H06Rik|AI426038|D430036N24Rik|Soga	suppressor of glucose, autophagy associated 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-107206717-2	chr11	107206617	107206817	+	670.375	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-17336.0	NM_001161329	68979.0	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-85828953-2	chr11	85828853	85829053	+	702.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_077059, intron 1 of 4)	intron (NR_077059, intron 1 of 4)	3435.0	NR_077059	69909.0	Mm.440214	NR_077059	ENSMUSG00000087013	2610027K06Rik	-	RIKEN cDNA 2610027K06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-137413188-4	chr6	137413079	137413279	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011216, intron 13 of 26)	MTE2b|LTR|ERVL-MaLR	2458.0	NM_001164403	19277.0	Mm.186361	NM_011216	ENSMUSG00000030223	Ptpro	D28|GLEPP1|PTPBK|PTPROt|PTPU2|PTPoc|PTPphi|Ptpn15|R-PTP-O	protein tyrosine phosphatase, receptor type, O	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-128132253-3	chr7	128132152	128132352	+	730.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021334, intron 5 of 29)	intron (NM_021334, intron 5 of 29)	2684.0	NM_021334	16411.0	Mm.22378	NM_021334	ENSMUSG00000030789	Itgax	AI449405|Cd11c|Cr4|N418	integrin alpha X	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-182928624-4	chr1	182928486	182928686	+	973.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26202.0	NM_016928	53791.0	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-104225109-4	chr12	104224993	104225193	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009251, intron 3 of 6)	intron (NM_009251, intron 3 of 6)	10460.0	NM_001033335	238393.0	Mm.483584	NM_001033335	ENSMUSG00000066363	Serpina3f	2A1|BC049975	serine (or cysteine) peptidase inhibitor, clade A, member 3F	protein-coding	3.49763652183643	2.90784408479082	3.18441000707986	4.23034034950413	3.59223359026371	4.71468051028881	2.03074029631292	3.89571220250436	0.430805045379434	0.512635912364007	0.945638053458749
Merged-chr12-55321892-3	chr12	55321778	55321978	+	993.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025373, intron 3 of 6)	intron (NM_025373, intron 3 of 6)	-18878.0	NM_021529	59032.0	Mm.427307	NM_021529	ENSMUSG00000021022	Ppp2r3c	4930511A21Rik|5730412A08Rik|G4-1|G5pr	protein phosphatase 2, regulatory subunit B'', gamma	protein-coding	2.67986554958106	3.30208525351215	2.63797103002509	2.97200669205027	3.59182210416773	4.08327280901937	4.87795821236595	3.89558493192113	1.90803753785865	0.000657396671248179	0.0139190210499453
Merged-chr3-88403089-2	chr3	88402989	88403189	+	959.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_025928, intron 1 of 4)	intron (NM_025928, intron 1 of 4)	7308.0	NM_001310605	67037.0	Mm.36715	NM_025928	ENSMUSG00000028066	Pmf1	2600009M07Rik|AL033286|AW060657	polyamine-modulated factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-45247168-2	chr9	45247068	45247268	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001198971, intron 4 of 4)	intron (NM_001198971, intron 4 of 4)	19539.0	NR_106054	102466803.0		NR_106054	ENSMUSG00000098361	Mir7086	Gm27643|mmu-mir-7086	microRNA 7086	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45020345-2	chr7	45020245	45020445	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_009101, exon 3 of 6)	exon (NM_009101, exon 3 of 6)	748.0	NM_001360133	20130.0	Mm.389894	NM_009101	ENSMUSG00000038387	Rras	AI573426	related RAS viral (r-ras) oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-136260425-2	chr1	136260325	136260525	+	576.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001101516, exon 1 of 1)	exon (NM_001101516, exon 1 of 1)	448.0	NM_001101516	383563.0	Mm.40367	NM_001101516	ENSMUSG00000052759	Gpr25	Gm1300	G protein-coupled receptor 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-57338612-2	chr17	57338512	57338712	+	564.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20074.0	NM_001355723	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-57762715-2	chr6	57762615	57762815	+	749.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146168, intron 3 of 4)	intron (NM_146168, intron 3 of 4)	60260.0	NM_133737	71835.0	Mm.274904	NM_133737	ENSMUSG00000062190	Lancl2	1700003F10Rik	LanC (bacterial lantibiotic synthetase component C)-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-55027528-4	chr1	55027437	55027637	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031179)	promoter-TSS (NM_031179)	-59.0	NM_031179	81898.0	Mm.279736	NM_031179	ENSMUSG00000025982	Sf3b1	155kDa|2810001M05Rik|AA409119|Prp10|SAP155|SF3b155|TA-8|Targ4	splicing factor 3b, subunit 1	protein-coding	5.98037353806106	5.84292803576753	5.70254417567047	6.30887980935119	6.12694791100325	6.94063248994368	6.48603838710957	6.17338803485724	0.524720132307777	0.0340220181354445	0.259997562795581
Merged-chr14-18238481-4	chr14	18238395	18238595	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011584, intron 1 of 7)	CpG	611.0	NM_011584	353187.0	Mm.26587	NM_011584	ENSMUSG00000021775	Nr1d2	RVR|Rev-erb	nuclear receptor subfamily 1, group D, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53337763-3	chr4	53337677	53337877	+	818.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-67545.0	NR_033139	381524.0	Mm.23351	NM_001033454	ENSMUSG00000086712	AI427809	Gm1659	expressed sequence AI427809	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-128110487-2	chr7	128110387	128110587	+	762.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008401, intron 16 of 29)	Lx8b|LINE|L1	-19081.0	NM_021334	16411.0	Mm.22378	NM_021334	ENSMUSG00000030789	Itgax	AI449405|Cd11c|Cr4|N418	integrin alpha X	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-10541419-2	chr18	10541319	10541519	+	818.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083628, intron 21 of 32)	intron (NM_001083628, intron 21 of 32)	68933.0	NM_001081222	77805.0	Mm.210996	NM_144542	ENSMUSG00000024293	Esco1	A930014I12Rik	establishment of sister chromatid cohesion N-acetyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-103729363-2	chr2	103729263	103729463	+	660.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153126, intron 21 of 28)	intron (NM_153126, intron 21 of 28)	31907.0	NM_153126	98956.0	Mm.288005	NM_153126	ENSMUSG00000027185	Nat10	AI429152	N-acetyltransferase 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-9710522-3	chr15	9710423	9710623	+	915.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305042, intron 9 of 36)	ORR1F|LTR|ERVL-MaLR	38345.0	NM_177123	320277.0	Mm.127822	NM_177123	ENSMUSG00000072663	Spef2	C230086A09Rik	sperm flagellar 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-80112103-2	chr12	80112008	80112208	+	973.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_007564, intron 1 of 1)	intron (NM_007564, intron 1 of 1)	905.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-24514452-1	chr1	24514352	24514552	+	572.0	f1_c57bl6.idr	intron (NM_007733, intron 9 of 50)	intron (NM_007733, intron 9 of 50)	72985.0	NM_007733	12823.0	Mm.329196	NM_007733	ENSMUSG00000026141	Col19a1	-	collagen, type XIX, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-96400068-4	chr11	96399906	96400106	+	889.133301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34248.0	NM_008266	15407.0	Mm.890	NM_008266	ENSMUSG00000018973	Hoxb1	Hox-2.9	homeobox B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-75899697-3	chr14	75899591	75899791	+	879.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026816, intron 7 of 7)	intron (NM_026816, intron 7 of 7)	51768.0	NR_028481	100303751.0	Mm.484707	NR_028481	ENSMUSG00000065147	Snora31	MBI-161	small nucleolar RNA, H/ACA box 31	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-13009943-4	chr7	13009826	13010026	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024699)	promoter-TSS (NM_001024699)	-74.0	NM_001360833	232879.0	Mm.279272	NM_001024699	ENSMUSG00000049600	Zbtb45	BB161562|Gm157|Zfp499	zinc finger and BTB domain containing 45	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-15202413-4	chr18	15202319	15202519	+	962.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50973.0	NM_134112	106931.0	Mm.329299	NM_134112	ENSMUSG00000036225	Kctd1	4933402K10Rik|AI661543|AW553000	potassium channel tetramerisation domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-67145597-3	chr15	67145502	67145702	+	908.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009177, intron 2 of 8)	(TG)n|Simple_repeat|Simple_repeat	31280.0	NM_009177	20442.0	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-3280583-2	chr8	3280483	3280683	+	718.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010568)	promoter-TSS (NM_010568)	-966.0	NM_001330056	16337.0	Mm.268003	NM_010568	ENSMUSG00000005534	Insr	4932439J01Rik|CD220|D630014A15Rik|IR|IR-A|IR-B	insulin receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56470028-2	chr17	56469928	56470128	+	579.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252455, intron 1 of 27)	intron (NM_001252455, intron 1 of 27)	6452.0	NM_001252455	19280.0	Mm.258771	NM_011218	ENSMUSG00000013236	Ptprs	AL022616|PTP|PTP-NU3|PTPNU-3|PTPsigma|Ptpt9|R-PTP-S|RPTPsigma	protein tyrosine phosphatase, receptor type, S	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19136945-2	chr7	19136845	19137045	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_175530, exon 2 of 2)	exon (NM_175530, exon 2 of 2)	12251.0	NM_026111	67369.0	Mm.234876	NM_026111	ENSMUSG00000030407	Qpctl	1810019P04Rik|BB101812|gQC	glutaminyl-peptide cyclotransferase-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-89004056-2	chr11	89003972	89004172	+	1000.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_009546, intron 1 of 8)	intron (NM_009546, intron 1 of 8)	4669.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	2.35883077750584	2.02336741081517	2.7322176500889	1.53974565543452	2.37865362248474	2.03803179189074	2.75376469643916	1.54646941163172	0.0402094667859801	0.965506715802717	0.998431161219273
Merged-chr1-131931017-4	chr1	131930900	131931100	+	943.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145804, intron 6 of 6)	intron (NM_001145804, intron 6 of 6)	20542.0	NM_175294	98415.0	Mm.246869	NM_175294	ENSMUSG00000026434	Nucks1	2700010L10Rik|8430423A01Rik|AI647518|C78391|Nucks	nuclear casein kinase and cyclin-dependent kinase substrate 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-114200340-4	chr2	114200225	114200425	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175466, intron 1 of 1)	intron (NM_175466, intron 1 of 1)	1107.0	NM_175466	228491.0	Mm.132523	NM_175466	ENSMUSG00000040321	Zfp770	6430601A21Rik|Znf770	zinc finger protein 770	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-94574801-4	chr16	94574709	94574909	+	867.537476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113389, intron 1 of 11)	intron (NM_001113389, intron 1 of 11)	3902.0	NM_001113389	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-87539904-2	chr6	87539804	87540004	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6645.0	NM_001286610	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-108662820-5	chr6	108662727	108662927	+	620.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011498, intron 4 of 4)	intron (NM_011498, intron 4 of 4)	-1893.0	NR_104577	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-49263435-5	chr6	49263350	49263550	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362188, intron 1 of 8)	CpG	602.0	NM_001347209	101214.0	Mm.196598	NM_198102	ENSMUSG00000029817	Tra2a	1500010G04Rik|AL022798|G430041M01Rik|mAWMS1	transformer 2 alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5232821-4	chr19	5232715	5232915	+	888.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153129, intron 1 of 23)	intron (NM_153129, intron 1 of 23)	40304.0	NM_153129	107975.0	Mm.234923	NM_153129	ENSMUSG00000024855	Pacs1	AI325977	phosphofurin acidic cluster sorting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-92713991-4	chr16	92713900	92714100	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111022, intron 2 of 6)	intron (NM_001111022, intron 2 of 6)	-16671.0	NM_009821	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-83596032-1	chr8	83595932	83596132	+	758.0	f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-1541.0	NM_134118	106529.0	Mm.352239	NM_027179	ENSMUSG00000031708	Tecr	2410016D23Rik|A230102P12Rik|AI173355|D17Ertd178e|Gpsn2|SC2	trans-2,3-enoyl-CoA reductase	protein-coding	2.12308532739563	1.97302218469623	2.30705125247617	1.49073750574966	2.14112468463528	2.62021063846683	1.28403900732871	2.76392762910426	0.753324159338413	0.440267396910532	0.909387391506812
Merged-chr9-47699855-3	chr9	47699655	47699855	+	692.655579	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	118453.0	NR_046048	100038460.0	Mm.447649	NR_046048		Gm10677	-	predicted gene 10677	ncRNA	1.63711031692147	0.722701427060253	1.22390771915421	0.701379508142692	1.33748085282199	0.947084790490608	0.713377535093206	1.51582833946775	0.102129291721526	0.946191950511946	0.998431161219273
Merged-chr10-53434882-4	chr10	53434776	53434976	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24994.0	NR_152767	102640074.0	Mm.412957	NR_152767		Gm36229	-	predicted gene, 36229	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-11966445-5	chr19	11966354	11966554	+	968.1333619999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033174, intron 1 of 13)	intron (NM_001033174, intron 1 of 13)	610.0	NM_001033174	76303.0	Mm.291279	NM_001033174	ENSMUSG00000024687	Osbp	1110018F06Rik|AW559088|mKIAA4220	oxysterol binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-29469245-2	chr19	29469145	29469345	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021396, intron 5 of 5)	intron (NM_021396, intron 5 of 5)	52742.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-18028223-2	chr2	18028123	18028323	+	872.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_028376, exon 2 of 2)	non-coding (NR_028376, exon 2 of 2)	974.0	NR_028378	100034739.0	Mm.401643	NR_028378		Gm17762	-	predicted gene, 17762	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76293243-2	chr15	76293143	76293343	+	648.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_028852)	TTS (NM_028852)	-1191.0	NM_001195537	100503915.0	Mm.393455	NM_001195537	ENSMUSG00000071724	Smpd5	Gm10345|MA-nSMase	sphingomyelin phosphodiesterase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-36926077-4	chr19	36925956	36926156	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080706)	promoter-TSS (NM_001080706)	-23.0	NM_001080706	107182.0	Mm.295062	NM_001080706	ENSMUSG00000040565	Btaf1	AI414500|AI447930|E430027O22Rik|TAF170	B-TFIID TATA-box binding protein associated factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-120054999-4	chr9	120054915	120055115	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009987, intron 1 of 1)	intron (NM_009987, intron 1 of 1)	13281.0	NM_009987	13051.0	Mm.44065	NM_009987	ENSMUSG00000052336	Cx3cr1	-	chemokine (C-X3-C motif) receptor 1	protein-coding	4.18302973348096	4.55387736450916	4.46322688990125	4.34566251330035	3.75677587581006	4.83060838582683	4.89139665293184	4.5111822097428	0.213737459061263	0.59767948381239	0.971981563164
Merged-chr11-60880139-2	chr11	60880039	60880239	+	729.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-1101.0	NM_001168507	216821.0	Mm.28063	NM_173453	ENSMUSG00000043284	Tmem11	5730466P16Rik|AA409091	transmembrane protein 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26503142-4	chr17	26503034	26503234	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5338.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	3.3931316165481	3.1388484218971	3.98990255621077	2.27456918001684	3.35950354724413	2.63033004300414	3.41741069755629	2.28731597781526	-0.533912839617485	0.440376095320228	0.909403165516712
Merged-chr13-45964036-9	chr13	45963977	45964177	+	997.555542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199304, intron 1 of 6)	CpG	914.0	NM_001199304	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-89753743-3	chr1	89753642	89753842	+	928.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037136, intron 11 of 16)	intron (NM_001037136, intron 11 of 16)	-69850.0	NR_015540	74403.0	Mm.444291	NR_015540		4933400F21Rik	1700091C04Rik|4930565K10Rik	RIKEN cDNA 4933400F21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70865790-4	chr11	70865690	70865890	+	946.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291143, intron 2 of 18)	intron (NM_001291143, intron 2 of 18)	21029.0	NM_001291142	54189.0	Mm.7087	NM_019400	ENSMUSG00000020817	Rabep1	Rab5ep|rabaptin-5|rabaptin-5alpha	rabaptin, RAB GTPase binding effector protein 1	protein-coding	-1.58994551673671	-1.55912852307891	-1.56844783632235	-1.57610299769523	-1.18549093183599	-1.55710898902261	-1.56633814807757	-1.57473272746952	1.78703309985663	0.610309988231842	1
Merged-chr11-32231320-1	chr11	32231220	32231420	+	594.0	f0_balb.idr	TTS (NR_104306)	TTS (NR_104306)	4815.0	NM_010822	268395.0	Mm.263161	NM_010822	ENSMUSG00000020287	Mpg	9830006D05|AI326268|APNG|Aag|Mid1	N-methylpurine-DNA glycosylase	protein-coding	-0.177560838546316	-0.527772163248269	-0.531222708449906	-0.53387594443953	-0.397249173534602	-0.526992564702035	0.0293025643331209	-0.533412996382107	1.05424126063864	0.690791320729613	1
Merged-chr5-120536085-2	chr5	120535992	120536192	+	726.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_145853, exon 28 of 28)	3' UTR (NM_145853, exon 28 of 28)	24900.0	NM_001177594	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-79792256-2	chr9	79792156	79792356	+	659.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133718, intron 1 of 6)	intron (NM_133718, intron 1 of 6)	1174.0	NM_133718	69981.0	Mm.486324	NM_133718	ENSMUSG00000032328	Tmem30a	2010200I23Rik|AW540225|Cdc50a|D9Wsu20e	transmembrane protein 30A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-84108151-4	chr17	84108046	84108246	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29486.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-13955116-2	chr13	13955016	13955216	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001362405, intron 1 of 12)	CpG	442.0	NM_178640	97884.0	Mm.21686	NM_178640	ENSMUSG00000039242	B3galnt2	A930105D20Rik|C80633|D230016N13Rik	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-112717303-2	chr12	112717203	112717403	+	603.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-4871.0	NM_001024602	217882.0	Mm.23689	NM_001024602	ENSMUSG00000072825	Cep170b	AI466840|AW555464|Kiaa0284|mKIAA0284	centrosomal protein 170B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-29212352-4	chr6	29212251	29212451	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011829)	promoter-TSS (NM_011829)	-54.0	NM_011829	23917.0	Mm.260707	NM_011829	ENSMUSG00000003500	Impdh1	B930086D20Rik|IMPDH-I	inosine monophosphate dehydrogenase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-55814360-5	chr16	55814228	55814428	+	677.099976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001159394, exon 10 of 12)	exon (NM_001159394, exon 10 of 12)	7810.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-12926626-3	chr18	12926527	12926727	+	900.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207530, intron 4 of 27)	intron (NM_207530, intron 4 of 27)	15214.0	NM_207530	64291.0	Mm.259470	NM_020573	ENSMUSG00000044252	Osbpl1a	G430090F17Rik|Gm753|ORP-1|Osbpl1b	oxysterol binding protein-like 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-23150433-2	chr19	23150333	23150533	+	702.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_035423)	TTS (NR_035423)	1002.0	NR_035423	100316672.0		NR_035423	ENSMUSG00000080626	Mir1192	Mirn1192|mmu-mir-1192	microRNA 1192	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-123367842-4	chr7	123367714	123367914	+	791.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316713, intron 1 of 19)	intron (NM_001316713, intron 1 of 19)	2101.0	NM_001122643	70497.0	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-63706520-4	chr9	63706400	63706600	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016769, intron 1 of 8)	intron (NM_016769, intron 1 of 8)	51494.0	NM_016769	17127.0	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-17368197-1	chr16	17368097	17368297	+	678.0	f0_balb.idr	intron (NM_001001983, intron 7 of 54)	intron (NM_001001983, intron 7 of 54)	36826.0	NM_001331047	15160.0	Mm.6609	NM_008223	ENSMUSG00000022766	Serpind1	AA985900|AI303446|HC-II|HCII|Hcf2	serine (or cysteine) peptidase inhibitor, clade D, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-44925716-2	chr2	44925616	44925816	+	858.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64094.0	NM_172662	227835.0	Mm.314312	NM_172662	ENSMUSG00000036890	Gtdc1	E330008O22Rik	glycosyltransferase-like domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70519752-2	chr14	70519652	70519852	+	744.125	f1_balb.idr|f1_c57bl6.idr	intron (NR_033241, intron 1 of 19)	intron (NR_033241, intron 1 of 19)	508.0	NM_009755	12153.0	Mm.27757	NM_009755	ENSMUSG00000022098	Bmp1	Pcp|Tld	bone morphogenetic protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-91581368-2	chr12	91581268	91581468	+	892.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_175335, intron 2 of 8)	intron (NM_175335, intron 2 of 8)	8281.0	NM_031391	83602.0	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-139434223-4	chr7	139434094	139434294	+	661.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355162, intron 1 of 15)	intron (NM_001355162, intron 1 of 15)	33700.0	NM_001355162	212111.0	Mm.28308	NM_183144	ENSMUSG00000025477	Inpp5a	-	inositol polyphosphate-5-phosphatase A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-52401636-4	chr6	52401544	52401744	+	891.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-86812.0	NR_038163	70593.0	Mm.158412	NR_038163	ENSMUSG00000086126	Evx1os	5730457N03Rik|Evx1as	even skipped homeotic gene 1, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-93885293-4	chr11	93885212	93885412	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134012)	promoter-TSS (NM_134012)	454.0	NM_001013375	217109.0	Mm.379350	NM_001013375	ENSMUSG00000054079	Utp18	6230425C22Rik|6430513M13|Wdr50	UTP18 small subunit processome component	protein-coding	4.62972014456867	4.45741475696341	5.01515346953945	5.18153577659358	4.90028759133385	4.82002940747377	4.72005193423509	4.91289864598399	-0.0143536753149509	0.9662170536874	0.998431161219273
Merged-chr11-87470991-4	chr11	87470882	87471082	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199293, intron 2 of 30)	CpG	43391.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-125083985-4	chr8	125083946	125084146	+	716.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_174854, intron 1 of 12)	intron (NM_174854, intron 1 of 12)	29851.0	NM_174854	244667.0	Mm.233504	NM_170596	ENSMUSG00000043051	Disc1	-	disrupted in schizophrenia 1	protein-coding	1.94019668903907	2.31886689607324	0.70537097773448	1.99123022632869	0.6615440241807	0.732351683327719	0.710327717247581	0.942976207134308	-4.58869552836817	0.00263907623928671	0.0412645135347027
Merged-chr2-31768784-1	chr2	31768684	31768884	+	545.0	f0_balb.idr	intron (NM_001283045, intron 1 of 10)	intron (NM_001283045, intron 1 of 10)	8611.0	NM_001283045	11350.0	Mm.1318	NM_009594	ENSMUSG00000026842	Abl1	AI325092|Abl|E430008G22Rik|c-Abl	c-abl oncogene 1, non-receptor tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120702217-4	chr8	120702116	120702316	+	861.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	33896.0	NM_001293559	12857.0	Mm.386758	NM_009941	ENSMUSG00000031818	Cox4i1	AL024441|COX|COX IV-1|COXIV|Cox4|Cox4a|IV-1	cytochrome c oxidase subunit 4I1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-178324292-2	chr2	178324192	178324392	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177790, intron 8 of 12)	intron (NM_001177790, intron 8 of 12)	83366.0	NM_177191	320558.0	Mm.70781	NM_177191	ENSMUSG00000060445	Sycp2	3830402K23Rik|4930518F03Rik	synaptonemal complex protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-113626623-4	chr5	113626522	113626722	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008153, intron 1 of 2)	intron (NM_008153, intron 1 of 2)	16981.0	NM_001359060	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-34847492-4	chr12	34847390	34847590	+	878.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271386, intron 2 of 27)	intron (NM_001271386, intron 2 of 27)	69605.0	NM_001271386	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	1.10506539597897	1.61496945084333	0.566017852158588	0.556543942754702	1.21965861697093	1.30140832741627	0.568701863121545	0.558208755312104	-0.347992866826624	0.834469808174543	0.998431161219273
Merged-chr7-49843513-1	chr7	49843413	49843613	+	596.0	f0_balb.idr	intron (NM_133740, intron 13 of 15)	intron (NM_133740, intron 13 of 15)	65155.0	NM_133740	71974.0	Mm.33202	NM_133740	ENSMUSG00000030505	Prmt3	2010005E20Rik|2410018A17Rik|AL033309|Hrmt1l3	protein arginine N-methyltransferase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-39499291-3	chr10	39499192	39499392	+	904.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122893, intron 3 of 13)	intron (NM_001122893, intron 3 of 13)	-113642.0	NM_134000	103213.0	Mm.436686	NM_134000	ENSMUSG00000019842	Traf3ip2	AI429613|Act1|CIKS	TRAF3 interacting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132533665-4	chr4	132533558	132533758	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_007512, exon 2 of 4)	5' UTR (NM_007512, exon 2 of 4)	1756.0	NM_007512	11983.0	Mm.2171	NM_007512	ENSMUSG00000054428	Atpif1	Atpi|IF(1)|If1	ATPase inhibitory factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-99460216-4	chr5	99460110	99460310	+	852.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 2 of 3)	intron (NR_030692, intron 2 of 3)	-207283.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135921587-3	chr4	135921499	135921699	+	858.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024243, intron 1 of 7)	intron (NM_024243, intron 1 of 7)	873.0	NM_024243	71665.0	Mm.439940	NM_024243	ENSMUSG00000028673	Fuca1	0610006A03Rik|9530055J05Rik|Afuc|Fuca	fucosidase, alpha-L- 1, tissue	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-83886770-2	chr3	83886670	83886870	+	790.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45162.0	NM_011905	24088.0	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-12736527-2	chr18	12736427	12736627	+	541.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028341, intron 13 of 13)	intron (NM_028341, intron 13 of 13)	-4828.0	NM_181731	71132.0	Mm.179740	NM_027687	ENSMUSG00000024430	Cabyr	1700016C01Rik|4933421A18Rik|CBP86|FSP-2	calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99087475-2	chr15	99087375	99087575	+	671.916626	f1_balb.idr|f1_c57bl6.idr	exon (NM_001024702, exon 1 of 2)	exon (NM_001024702, exon 1 of 2)	253.0	NM_001024702	239659.0	Mm.309917	NM_001024702	ENSMUSG00000001076	C1ql4	C1qtnf11|CTRP11	complement component 1, q subcomponent-like 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34030009-2	chr17	34029909	34030109	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077709, intron 5 of 7)	intron (NM_001077709, intron 5 of 7)	1681.0	NM_001077709	14977.0	Mm.18556	NM_008202	ENSMUSG00000024327	Slc39a7	AA408174|AI117660|AL024048|H-2Ke4|H2-Ke4|Ke-4|Ke4|Ring5|Zip7	solute carrier family 39 (zinc transporter), member 7	protein-coding	0.520692971014389	0.549008707245007	1.02384861243853	1.20187225472105	0.680386755174517	0.551077190018545	1.03422481966915	1.30198830913949	0.325056305353502	0.842533791062717	1
Merged-chr7-137406251-2	chr7	137406151	137406351	+	866.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_029886, intron 1 of 3)	intron (NM_029886, intron 1 of 3)	4505.0	NM_029886	77252.0	Mm.29184	NM_029886	ENSMUSG00000040139	9430038I01Rik	-	RIKEN cDNA 9430038I01 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124274925-2	chr6	124274825	124275025	+	547.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29726.0	NM_001170395	93671.0	Mm.37426	NM_053094	ENSMUSG00000008845	Cd163	CD163v2|CD163v3	CD163 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30394615-4	chr7	30394596	30394796	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19092.0	NM_011662	22177.0	Mm.46301	NM_011662	ENSMUSG00000030579	Tyrobp	DAP12|KARAP|Ly83	TYRO protein tyrosine kinase binding protein	protein-coding	2.09648888513196	1.14658655451345	2.003516089356	1.40955038224174	1.04631732083992	1.15413219083601	0.892098467929611	1.41731059110206	-2.15341463416532	0.0859131203492591	0.450386958032513
Merged-chr14-61686048-2	chr14	61685948	61686148	+	756.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3675.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-140942525-2	chr7	140942425	140942625	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_145387, exon 2 of 14)	exon (NM_145387, exon 2 of 14)	1134.0	NM_145387	212974.0	Mm.260139	NM_145387	ENSMUSG00000062031	Pgghg	5730511L01Rik|Athl1|BC023151	protein glucosylgalactosylhydroxylysine glucosidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-38164742-2	chr2	38164642	38164842	+	688.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146122, intron 2 of 21)	intron (NM_146122, intron 2 of 21)	122642.0	NM_146122	227801.0	Mm.314245	NM_146122	ENSMUSG00000035392	Dennd1a	6030446I19Rik|connecdenn	DENN/MADD domain containing 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-98601708-4	chr9	98601588	98601788	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025485)	promoter-TSS (NM_025485)	-9.0	NM_025485	64655.0	Mm.17949	NM_025485	ENSMUSG00000032459	Mrps22	3100002P07Rik|Rpms22	mitochondrial ribosomal protein S22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-37428762-3	chr19	37428701	37428901	+	939.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4|LINE|L1	-6040.0	NM_008245	15242.0	Mm.33896	NM_008245	ENSMUSG00000024986	Hhex	Hex|Hex1|Hhex-rs2|Prh|Prhx	hematopoietically expressed homeobox	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-10392891-4	chr17	10392800	10393000	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63316.0	NR_077239	319750.0	Mm.383485	NR_077237	ENSMUSG00000089633	A230009B12Rik	-	RIKEN cDNA A230009B12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-5712658-2	chr2	5712558	5712758	+	547.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290374, intron 1 of 9)	intron (NM_001290374, intron 1 of 9)	2104.0	NM_001290374	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	-1.8418762459921	-1.8125357239735	-1.82140854000656	-1.82869693527674	-1.56059678980999	-1.8106129477253	-1.81939992894326	-1.82739231600805	1.3620893379502	0.699511506488145	1
Merged-chr14-55680830-3	chr14	55680727	55680927	+	853.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_145705, exon 4 of 9)	exon (NM_145705, exon 4 of 9)	990.0	NM_145705	28113.0	Mm.29346	NM_145705	ENSMUSG00000007589	Tinf2	AW552114|D14Wsu146e|Tin2	Terf1 (TRF1)-interacting nuclear factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-163712852-5	chr2	163712750	163712950	+	879.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039390, intron 3 of 4)	intron (NM_001039390, intron 3 of 4)	18813.0	NM_011106	18769.0	Mm.10091	NM_011106	ENSMUSG00000035268	Pkig	PKIgamma	protein kinase inhibitor, gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6118520-4	chr19	6118416	6118616	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133678)	promoter-TSS (NM_133678)	70.0	NM_133678	66406.0	Mm.303924	NM_133678	ENSMUSG00000024790	Sac3d1	2410004C24Rik|AU015683|shd1	SAC3 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-60285122-3	chr10	60285027	60285227	+	915.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146124, intron 1 of 13)	intron (NM_001146124, intron 1 of 13)	666.0	NM_001146124	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-21848982-2	chr16	21848882	21849082	+	574.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42987.0	NM_172821	71751.0	Mm.420837	NM_172821	ENSMUSG00000033618	Map3k13	C130026N12Rik|LZK	mitogen-activated protein kinase kinase kinase 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-75298081-3	chr3	75297993	75298193	+	862.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28015.0	NM_026460	67931.0	Mm.259446	NM_026460	ENSMUSG00000034139	Serpini2	Spi14	serine (or cysteine) peptidase inhibitor, clade I, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124035698-2	chr5	124035598	124035798	+	586.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3438.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-34850956-6	chr1	34850831	34851031	+	970.2777710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145516, intron 1 of 7)	intron (NM_145516, intron 1 of 7)	942.0	NM_001357425	226971.0	Mm.292751	NM_145516	ENSMUSG00000026123	Plekhb2	2310009M15Rik|AU018239|Evt2|Phdc|evt-2	pleckstrin homology domain containing, family B (evectins) member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-18992366-2	chr7	18992266	18992466	+	901.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_145579, exon 2 of 3)	exon (NM_145579, exon 2 of 3)	1121.0	NM_145579	232934.0	Mm.440069	NM_145579	ENSMUSG00000048481	Mypop	Myodysa|P42pop	Myb-related transcription factor, partner of profilin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-51982048-1	chr7	51981948	51982148	+	924.5	f0_balb.idr	intron (NM_001330607, intron 7 of 7)	intron (NM_001330607, intron 7 of 7)	23666.0	NR_027704	75744.0	Mm.386823	NM_001160345	ENSMUSG00000074093	Svip	1700006C13Rik|6620401M08Rik	small VCP/p97-interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-148036608-2	chr4	148036508	148036708	+	611.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011929, intron 2 of 22)	intron (NM_011929, intron 2 of 22)	2205.0	NM_011929	26372.0	Mm.89987	NM_011929	ENSMUSG00000029016	Clcn6	AI850629|Clc6	chloride channel, voltage-sensitive 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-125331552-4	chr10	125331453	125331653	+	926.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2590.0	NM_001358496	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122114438-3	chr5	122114348	122114548	+	929.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183307, intron 9 of 12)	intron (NM_183307, intron 9 of 12)	13497.0	NM_010861	17906.0	Mm.1529	NM_010861	ENSMUSG00000013936	Myl2	MLC-2|MLC-2s/v|MLC-2v|Mlc2v|Mylpc	myosin, light polypeptide 2, regulatory, cardiac, slow	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70720797-4	chr11	70720720	70720920	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153103, intron 18 of 22)	intron (NM_153103, intron 18 of 22)	14830.0	NR_105890	102465557.0		NR_105890	ENSMUSG00000105932	Mir6925	mmu-mir-6925	microRNA 6925	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191270369-4	chr1	191270273	191270473	+	996.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	45919.0	NR_151547	100504360.0	Mm.16927	NM_001033188		D730003I15Rik	AU020850	RIKEN cDNA D730003I15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70762032-3	chr8	70761942	70762142	+	883.288879	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_023065)	TTS (NM_023065)	-1121.0	NM_183170	234384.0	Mm.213010	NM_183170	ENSMUSG00000035559	Mpv17l2	Fksg24	MPV17 mitochondrial membrane protein-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-109124809-3	chr4	109124712	109124912	+	820.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355190, intron 2 of 21)	MTE2a|LTR|ERVL-MaLR	-6776.0	NM_001134791	100273.0	Mm.366315	NM_133885	ENSMUSG00000028559	Osbpl9	2600011I06Rik|AU015843|Orp-9	oxysterol binding protein-like 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-58558312-2	chr9	58558212	58558412	+	759.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17372.0	NM_133983	102657.0	Mm.5356	NM_133983	ENSMUSG00000035914	Cd276	6030411F23Rik|AU016588|B7RP-2|B7h3	CD276 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-103402376-3	chr11	103402283	103402483	+	828.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183034, intron 2 of 11)	intron (NM_183034, intron 2 of 11)	10281.0	NM_183034	353047.0	Mm.18556	NM_183034	ENSMUSG00000034247	Plekhm1	AP162|B2|BC038943|D330036J23Rik	pleckstrin homology domain containing, family M (with RUN domain) member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-162999934-3	chr2	162999847	163000047	+	627.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013731, intron 10 of 13)	B3|SINE|B2	8532.0	NM_001291152	27219.0	Mm.26462	NM_013731	ENSMUSG00000017868	Sgk2	AI098171|AW146006|Sgkl	serum/glucocorticoid regulated kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80904816-2	chr10	80904716	80904916	+	903.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347140, intron 3 of 8)	intron (NM_001347140, intron 3 of 8)	1596.0	NM_001347140	16907.0	Mm.7362	NM_010722	ENSMUSG00000062075	Lmnb2	-	lamin B2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-23311195-4	chr16	23311090	23311290	+	703.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252506, intron 1 of 6)	L1Md_F2|LINE|L1	20720.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-62964801-4	chr13	62964677	62964877	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289924)	promoter-TSS (NM_001289924)	-116.0	NM_001289926	72061.0	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	5.57526483669028	6.34712641807645	6.16425818169059	5.38709704103973	5.29134394126357	5.28706487509735	6.09108755117143	5.23002788921616	-0.442633454004987	0.149689962235851	0.601628862608932
Merged-chr11-37079645-4	chr11	37079556	37079756	+	895.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-135415.0	NM_011856	23964.0	Mm.439889	NM_011856	ENSMUSG00000049336	Tenm2	Odz2|Odz3|Ten-2|Ten-m2	teneurin transmembrane protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3715903-3	chr4	3715882	3716082	+	708.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_028126, exon 1 of 1)	non-coding (NR_028126, exon 1 of 1)	1018.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70591746-2	chr8	70591706	70591906	+	899.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007924, exon 12 of 12)	3' UTR (NM_007924, exon 12 of 12)	-2675.0	NM_023627	71780.0	Mm.29357	NM_023627	ENSMUSG00000019139	Isyna1	1300017C10Rik|AU018670	myo-inositol 1-phosphate synthase A1	protein-coding	-0.293155884733368	-0.273487412242065	-0.27985395604579	-0.284816393398195	0.156590164757322	-0.272062220361872	-0.278443509253939	0.862046224359478	4.07039764989557	0.0891813578168129	1
Merged-chr1-125526186-3	chr1	125526080	125526280	+	938.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34415.0	NM_001356294	74150.0	Mm.28654	NM_028787	ENSMUSG00000026342	Slc35f5	1300003P13Rik|AI646727	solute carrier family 35, member F5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34315533-1	chr17	34315433	34315633	+	839.0	f1_balb.idr	intron (NM_010382, intron 4 of 5)	intron (NM_010382, intron 4 of 5)	9666.0	NM_010382	14969.0	Mm.22564	NM_010382	ENSMUSG00000060586	H2-Eb1	Eb|H-2Eb|H2Eb|Ia-4|Ia4	histocompatibility 2, class II antigen E beta	protein-coding	-0.618802996698496	-0.607328694272964	-0.611086729728348	-0.613986951272676	-0.618086468559668	0.0317600808888597	-0.610257766076773	-0.17212621731017	3.41989740960314	0.218146092618797	1
Merged-chr14-54578387-4	chr14	54578296	54578496	+	955.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010590)	promoter-TSS (NM_010590)	-735.0	NM_010590	16475.0	Mm.100253	NM_010590	ENSMUSG00000022178	Ajuba	Jub	ajuba LIM protein	protein-coding	5.32107346716105	5.03038834406549	5.40133692752478	5.30052958195524	5.15825441495352	4.82856504030538	5.11003933572193	5.37905598018467	-0.158007862817426	0.593185755279675	0.9706660979479
Merged-chr7-47142597-2	chr7	47142497	47142697	+	807.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-8913.0	NM_013643	19259.0	Mm.4654	NM_013643	ENSMUSG00000030854	Ptpn5	Step	protein tyrosine phosphatase, non-receptor type 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-146641833-4	chr6	146641615	146641815	+	690.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025315)	promoter-TSS (NM_025315)	-864.0	NM_025315	108098.0	Mm.26212	NM_025315	ENSMUSG00000030291	Med21	0610007L03Rik|AI449604|D19234|D6Ertd782e|Srb7|Surb7	mediator complex subunit 21	protein-coding	1.39206435165415	0.629196940559102	1.54984678496728	1.89550258343067	0.941168515962606	0.632449220288756	0.617815349912178	0.605040294106437	-3.49750442357201	0.0345639366309248	0.262910890763632
Merged-chr5-92491014-4	chr5	92490927	92491127	+	990.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007644, intron 1 of 11)	intron (NM_007644, intron 1 of 11)	14630.0	NM_007644	12492.0	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-103454523-2	chr15	103454423	103454623	+	764.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_153505, intron 1 of 30)	intron (NM_153505, intron 1 of 30)	698.0	NM_153505	105855.0	Mm.30805	NM_153505	ENSMUSG00000022488	Nckap1l	4930568P13Rik|AI463083|Hem1|Hemp1	NCK associated protein 1 like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55571577-2	chr19	55571477	55571677	+	977.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360431, intron 8 of 8)	Tigger5b|DNA|TcMar-Tigger	130627.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-182045373-4	chr1	182045288	182045488	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25408.0	NM_001083120	13800.0	Mm.87759	NM_008680	ENSMUSG00000022995	Enah	Mena|NDPP-1|Ndpp1|WBP8	ENAH actin regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-85897754-4	chr1	85897587	85897787	+	776.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022417, intron 1 of 5)	intron (NM_022417, intron 1 of 5)	3177.0	NM_022417	64294.0	Mm.29870	NM_022417	ENSMUSG00000026223	Itm2c	3110038L02Rik|BRI3|Bricd2c|E25|E25C|ITM3	integral membrane protein 2C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-108578076-2	chr9	108577976	108578176	+	592.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_028944)	TTS (NM_028944)	594.0	NM_031392	83669.0	Mm.335454	NM_031392	ENSMUSG00000066357	Wdr6	mWDR6	WD repeat domain 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19074014-2	chr7	19073914	19074114	+	870.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_031255, intron 5 of 5)	intron (NM_031255, intron 5 of 5)	-2186.0	NM_010058	13401.0	Mm.2852	NM_010058	ENSMUSG00000030410	Dmwd	DMR-N9|Dm9	dystrophia myotonica-containing WD repeat motif	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-29418076-4	chr19	29417977	29418177	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021396, intron 1 of 5)	intron (NM_021396, intron 1 of 5)	7158.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-74233977-3	chr16	74233878	74234078	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358493, intron 2 of 28)	MTD|LTR|ERVL-MaLR	108089.0	NR_030464	751561.0		NR_030464	ENSMUSG00000104758	Mir691	Mirn691|mir-691|mmu-mir-691	microRNA 691	ncRNA	-2.18138529563533	-2.15523716995652	-2.1631445789866	-2.16963996020037	-2.05513010215571	-2.15352360143315	-2.16135451490766	-2.16847729006863	0.759018020146679	0.829933115115583	1
Merged-chr16-18345393-4	chr16	18345286	18345486	+	941.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359110, intron 1 of 9)	intron (NM_001359110, intron 1 of 9)	-1454.0	NM_001359111	27883.0	Mm.265990	NM_138583	ENSMUSG00000013539	Tango2	D16H22S680E|T10	transport and golgi organization 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-123197025-4	chr10	123196958	123197158	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027604)	promoter-TSS (NM_027604)	-39.0	NM_001301628	14479.0	Mm.244209	NM_027604	ENSMUSG00000020124	Usp15	4921514G19Rik|AI327321|E430033I05Rik|Gcap18	ubiquitin specific peptidase 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-46260510-2	chr17	46260410	46260610	+	687.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028751, intron 8 of 10)	intron (NM_028751, intron 8 of 10)	6345.0	NM_001111142	224813.0	Mm.70999	NM_001111142	ENSMUSG00000071073	Lrrc73	Gm88	leucine rich repeat containing 73	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-150899227-1	chr5	150899127	150899327	+	623.0	f1_balb.idr	Intergenic	Intergenic	-53380.0	NM_013823	16591.0	Mm.6500	NM_013823	ENSMUSG00000058488	Kl	alpha-kl	klotho	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-34510574-4	chr4	34510473	34510673	+	915.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	-40042.0	NM_001007589	433693.0	Mm.389532	NM_026019	ENSMUSG00000028291	Akirin2	2700059D21Rik|AA114675|AA522011|AU019887|Akirin-2	akirin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-111562321-2	chr9	111562239	111562439	+	830.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001324546, exon 10 of 10)	3' UTR (NM_001324546, exon 10 of 10)	123258.0	NM_172928	245038.0	Mm.26361	NM_172928	ENSMUSG00000032500	Dclk3	BC056929|C730036H08|Dcamkl3	doublecortin-like kinase 3	protein-coding	-1.53362919331644	-1.50201671710775	-1.51157659084044	-1.08120497225282	-1.53141005593807	-1.49994505258991	-1.50941244497383	-1.51802371459528	-1.94474658522739	0.577200604274218	1
Merged-chr11-51809773-4	chr11	51809680	51809880	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46117.0	NM_025535	66397.0	Mm.196592	NM_025535	ENSMUSG00000020386	Sar1b	2310075M17Rik|2900019I22Rik|CMRD|Sara1b|Sara2|Sarb	secretion associated Ras related GTPase 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-21750569-4	chr14	21750463	21750663	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026283)	promoter-TSS (NM_026283)	32.0	NM_001359954	67630.0	Mm.102765	NM_026283	ENSMUSG00000021770	Samd8	1110053F04Rik|1700010P07Rik|SMSr	sterile alpha motif domain containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-80723422-3	chr1	80723314	80723514	+	725.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175291, intron 1 of 55)	intron (NM_175291, intron 1 of 55)	35139.0	NM_175291	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131765789-3	chr1	131765716	131765916	+	690.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177243, intron 18 of 20)	intron (NM_177243, intron 18 of 20)	21794.0	NM_177243	320718.0	Mm.482704	NM_177243	ENSMUSG00000042268	Slc26a9	E030002L01Rik	solute carrier family 26, member 9	protein-coding	2.70072854152915	2.24148422085123	1.71232912654583	1.66704374969914	2.00943250597388	2.12079494101474	1.26707042233753	2.66486020077751	-0.107510558405916	0.913980524888191	0.998431161219273
Merged-chr13-5911638-4	chr13	5911556	5911756	+	977.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	50167.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-26176374-2	chr10	26176274	26176474	+	598.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53333.0	NM_001013766	268288.0	Mm.213322	NM_001013766	ENSMUSG00000051354	Samd3	Gm623	sterile alpha motif domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-86586192-4	chr6	86586153	86586353	+	810.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41921.0	NM_026414	67855.0	Mm.183043	NM_026414	ENSMUSG00000033508	Asprv1	2300003P22Rik|AA986851|SASP|SASPase|Taps	aspartic peptidase, retroviral-like 1	protein-coding	1.98930299551002	2.22674649310974	1.3773458776445	2.69947328646176	2.23455930166778	2.38130257762857	2.30247696234989	2.78839972379622	0.632369735860916	0.480381884432458	0.928717668292077
Merged-chr5-32135090-4	chr5	32134998	32135198	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1374.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34898434-5	chr17	34898321	34898521	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286573)	promoter-TSS (NM_001286573)	-71.0	NM_001286575	110147.0	Mm.35345	NM_145830	ENSMUSG00000013787	Ehmt2	Bat8|D17Ertd710e|G9a|KMT1C|NG36	euchromatic histone lysine N-methyltransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165855112-2	chr2	165855012	165855212	+	596.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252587, intron 2 of 11)	intron (NM_001252587, intron 2 of 11)	3061.0	NM_001252585	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-75696645-4	chr2	75696542	75696742	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132727, intron 1 of 1)	intron (NR_132727, intron 1 of 1)	8021.0	NR_132727	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-46704498-2	chr17	46704398	46704598	+	997.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357684, intron 1 of 14)	intron (NM_001357684, intron 1 of 14)	504.0	NM_009358	21770.0	Mm.295009	NM_009358	ENSMUSG00000059409	Ppp2r5d	B'delta|TEG-271|Tex271	protein phosphatase 2, regulatory subunit B', delta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-138155804-4	chr5	138155703	138155903	+	995.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019747)	promoter-TSS (NM_019747)	-59.0	NM_019747	56314.0	Mm.19274	NM_019747	ENSMUSG00000037007	Zfp113	4732456B05Rik|mKIAA4229	zinc finger protein 113	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31830000-2	chr14	31829900	31830100	+	703.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001024604, intron 1 of 27)	CpG	415.0	NM_001024604	105522.0	Mm.37660	NM_001024604	ENSMUSG00000014496	Ankrd28	AI465466|AI604979|E430019N21Rik|mKIAA0379	ankyrin repeat domain 28	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-52191344-2	chr5	52191244	52191444	+	806.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007839)	promoter-TSS (NM_007839)	663.0	NR_015537	414108.0	Mm.383512	NR_015537	ENSMUSG00000097145	9230114K14Rik	-	RIKEN cDNA 9230114K14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-62129960-4	chr13	62129888	62130088	+	996.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039239)	promoter-TSS (NM_001039239)	98.0	NM_001039239	630579.0	Mm.440905	NM_001039239	ENSMUSG00000074867	Zfp808	EG630579|Gm7036	zinc finger protein 808	protein-coding	3.43282041092835	4.07220157165857	3.49559313510067	2.68721179138038	2.90845793434587	3.37189458515547	3.04802603152461	3.56184644145962	-0.415138012609945	0.485213956793642	0.931753689758342
Merged-chr1-171504782-2	chr1	171504667	171504867	+	614.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_019484)	TTS (NM_019484)	1289.0	NM_019484	56009.0	Mm.389208	NM_019484	ENSMUSG00000060244	Alyref2	C130042O11Rik|REF2|Refbp2	Aly/REF export factor 2	protein-coding	0.355253795861592	0.391532338500704	0.379901396646686	0.370763716835832	1.06060827638777	1.48061407278107	0.382486822782351	1.34104878240168	4.74111398192199	0.00880352788601509	0.0993335996016387
Merged-chr11-31870762-4	chr11	31870562	31870762	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290676)	promoter-TSS (NM_001290676)	-278.0	NM_001290676	67579.0	Mm.339792	NM_026252	ENSMUSG00000020300	Cpeb4	Cpe-bp4|Cpeb-4|mCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122428822-2	chr8	122428722	122428922	+	866.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301284, intron 1 of 4)	ID_B1|SINE|B4	4118.0	NM_001301284	13057.0	Mm.271671	NM_007806	ENSMUSG00000006519	Cyba	b558|nmf333|p22-phox|p22phox	cytochrome b-245, alpha polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-38296110-4	chr2	38296017	38296217	+	783.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB3|LINE|L1	-8733.0	NM_146122	227801.0	Mm.314245	NM_146122	ENSMUSG00000035392	Dennd1a	6030446I19Rik|connecdenn	DENN/MADD domain containing 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-55467360-2	chr13	55467260	55467460	+	689.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001030296, intron 1 of 2)	intron (NM_001030296, intron 1 of 2)	3093.0	NM_001030296	432763.0	Mm.315457	NM_001030296	ENSMUSG00000034686	Prr7	XM_484263	proline rich 7 (synaptic)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-20704664-2	chr18	20704564	20704764	+	783.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019737, intron 4 of 8)	intron (NM_019737, intron 4 of 8)	-39404.0	NR_155534	102633478.0		NR_155534	ENSMUSG00000085595	Gm16090	-	predicted gene 16090	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-43457136-3	chr1	43457044	43457244	+	873.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010879, intron 1 of 4)	intron (NM_010879, intron 1 of 4)	11393.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-55320658-1	chr13	55320558	55320758	+	546.0	f1_balb.idr	intron (NM_009000, intron 5 of 7)	intron (NM_009000, intron 5 of 7)	1322.0	NM_009000	19336.0	Mm.220923	NM_009000	ENSMUSG00000034789	Rab24	6530406O07Rik	RAB24, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-84001218-2	chr12	84001116	84001316	+	886.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8286.0	NM_012006	26897.0	Mm.1978	NM_012006	ENSMUSG00000072949	Acot1	ACH2|CTE-1|CTE-I|Cte1|D12Ucla1	acyl-CoA thioesterase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-70245147-4	chr10	70245084	70245284	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025807)	promoter-TSS (NM_025807)	-92.0	NM_025807	66859.0	Mm.19325	NM_025807	ENSMUSG00000037762	Slc16a9	1200003C15Rik|4930425B13Rik|AI552636	solute carrier family 16 (monocarboxylic acid transporters), member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34256443-1	chr17	34256343	34256543	+	748.0	f1_c57bl6.idr	Intergenic	RMER17D2|LTR|ERVK	-6784.0	NM_207105	14961.0	Mm.254067	NM_207105	ENSMUSG00000073421	H2-Ab1	AI845868|Abeta|H-2Ab|H2-Ab|I-Abeta|IAb|Ia-2|Ia2|Rmcs1	histocompatibility 2, class II antigen A, beta 1	protein-coding	2.71136149472774	1.03361431428658	1.2750567417789	2.49115738260926	1.69084361091588	1.04021510020333	1.01024011261714	2.57817242414553	-0.742842500187935	0.55136280299335	0.959195395405638
Merged-chr8-24421523-2	chr8	24421423	24421623	+	732.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17423.0	NM_026931	69068.0	Mm.25775	NM_026931	ENSMUSG00000056313	Tcim	1110065B09Rik|1810011O10Rik|AW121743|AW321058	transcriptional and immune response regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-48817503-4	chr9	48817404	48817604	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033324, intron 2 of 6)	intron (NM_001033324, intron 2 of 6)	18441.0	NM_001033324	235320.0	Mm.457803	NM_001033324	ENSMUSG00000066687	Zbtb16	AI467657|PLZF|Zfp145|lu	zinc finger and BTB domain containing 16	protein-coding	4.72695795181618	5.60514764999872	5.47426066344617	5.25737582484514	5.58773386495995	4.9884782987268	5.66848290932505	5.05491240442258	0.07917128827917	0.80245208042738	0.998431161219273
Merged-chr5-145115907-2	chr5	145115807	145116007	+	929.2999880000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_023142, intron 1 of 9)	BC1_Mm|scRNA|scRNA	1651.0	NM_023142	11867.0	Mm.30010	NM_023142	ENSMUSG00000029622	Arpc1b	41kDa|AA408064|AA408534|AA571392|AF007010|AW208418|L72|SOP2Hs|p41-ARC	actin related protein 2/3 complex, subunit 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-33021914-2	chr5	33021814	33022014	+	662.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_011738, intron 1 of 1)	ID4|SINE|ID	3098.0	NM_011738	22629.0	Mm.332314	NM_011738	ENSMUSG00000018965	Ywhah	-	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-67586548-4	chr11	67586470	67586670	+	913.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001109657)	promoter-TSS (NM_001109657)	70.0	NM_001109657	14457.0	Mm.40338	NM_008088	ENSMUSG00000033066	Gas7	AW124766|B230343A10Rik|Gas7-cb	growth arrest specific 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-136327285-4	chr7	136327217	136327417	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22098.0	NR_040459	330664.0	Mm.127762	NR_040459	ENSMUSG00000109633	C230079O03Rik	C230079O03	RIKEN cDNA C230079O03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-11993260-2	chr15	11993160	11993360	+	566.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011294, intron 2 of 4)	intron (NM_011294, intron 2 of 4)	2747.0	NM_011294	20024.0	Mm.41746	NM_011294	ENSMUSG00000022205	Sub1	AI842364|P15|P9|Pc4|Rpo2tc1	SUB1 homolog (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122886723-1	chr8	122886623	122886823	+	545.0	f1_balb.idr	intron (NM_001081379, intron 11 of 12)	intron (NM_001081379, intron 11 of 12)	38349.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-44527740-3	chr10	44527645	44527845	+	824.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68997.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-45718733-3	chr11	45718621	45718821	+	806.122253	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-89362.0	NR_045876	100009664.0	Mm.415439	NR_045876		F630206G17Rik	-	RIKEN cDNA F630206G17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-53443624-1	chr10	53443524	53443724	+	576.0	f0_balb.idr	Intergenic	Intergenic	33742.0	NR_152767	102640074.0	Mm.412957	NR_152767		Gm36229	-	predicted gene, 36229	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-70258106-2	chr9	70258006	70258206	+	574.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_181072, intron 1 of 27)	MER90a|LTR|ERV1	50756.0	NM_181072	71602.0	Mm.249311	NM_181072	ENSMUSG00000032220	Myo1e	2310020N23Rik|9130023P14Rik|AA407778|myosin-1e|myr 3	myosin IE	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-58116976-4	chr19	58116887	58117087	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181415, intron 28 of 28)	intron (NM_181415, intron 28 of 28)	65820.0	NR_049196	100885835.0		NR_049196	ENSMUSG00000093757	Mir5623	Gm26068|mir-5623|mmu-mir-5623	microRNA 5623	ncRNA	3.88325430849072	4.92939444793767	4.66135602755077	3.74726220908696	3.65313340390863	4.79358123128503	3.88905524670618	4.72358322810273	-0.0503237900603444	0.914621662047144	0.998431161219273
Merged-chr10-40525955-4	chr10	40525837	40526037	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44425.0	NM_027572	70840.0	Mm.332570	NM_027572	ENSMUSG00000019834	Slc22a16	4921504E14Rik|CT2|FLIPT2|OCT6|OKB1	solute carrier family 22 (organic cation transporter), member 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-148489494-4	chr5	148489400	148489600	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	62173.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-64408322-4	chr13	64408258	64408458	+	896.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24195.0	NM_053180	105278.0	Mm.74982	NM_053180	ENSMUSG00000021483	Cdk20	4932702G04Rik|AU019450|AW558027|CDCH|Ccrk|PNQLARE|p42	cyclin-dependent kinase 20	protein-coding	2.15055342400994	1.68093460333343	1.46213836924527	1.02484092032206	2.30014869206609	1.31791796013066	1.90128118022211	1.24805327493337	0.357656078329891	0.758570169602804	0.998431161219273
Merged-chr19-46516503-2	chr19	46516403	46516603	+	954.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_053100)	TTS (NM_053100)	14855.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-45443889-2	chr12	45443789	45443989	+	835.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-369406.0	NM_144552	217517.0	Mm.285400	NM_144552	ENSMUSG00000046314	Stxbp6	BC024598|C85317	syntaxin binding protein 6 (amisyn)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-115485876-3	chr6	115485749	115485949	+	735.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001308354, intron 7 of 7)	intron (NM_001308354, intron 7 of 7)	-58855.0	NM_199033	381802.0	Mm.291208	NM_199033	ENSMUSG00000042389	Tsen2	AU067695	tRNA splicing endonuclease subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-48185436-4	chr17	48185335	48185535	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER4B|LTR|ERVK	-18178.0	NM_178796	328830.0	Mm.470939	NM_178796	ENSMUSG00000043939	A530064D06Rik	Trem4|pdctrem	RIKEN cDNA A530064D06 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-56896145-3	chr8	56896048	56896248	+	759.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F|LTR|ERVL-MaLR	345014.0	NM_015791	50753.0	Mm.251174	NM_015791	ENSMUSG00000038206	Fbxo8	Fbx8	F-box protein 8	protein-coding	0.445727308704277	-0.0721693683512756	0.0908945028145469	-0.0802611765344364	0.172080360962392	0.405707874459879	-0.0757359458236588	-0.0796473186762002	0.0350960925582751	0.987181917705446	1
Merged-chr12-81845213-4	chr12	81845079	81845279	+	918.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14851.0	NM_018814	54604.0	Mm.86584	NM_018814	ENSMUSG00000021140	Pcnx	2900024E21Rik|3526401J03Rik|AF096286|AI327143|AI413187|Pcnx1|Pcnxl1	pecanex homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-105109790-4	chr4	105109637	105109837	+	912.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_178143, exon 1 of 9)	exon (NM_178143, exon 1 of 9)	161.0	NM_178143	108079.0	Mm.48638	NM_178143	ENSMUSG00000028518	Prkaa2	2310008I11Rik|A830082D05|AMPKalpha2	protein kinase, AMP-activated, alpha 2 catalytic subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-34864608-4	chr13	34864515	34864715	+	870.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10879.0	NM_013830	19134.0	Mm.10027	NM_013830	ENSMUSG00000021413	Prpf4b	2610037H07|Prp4|Prp4k|Prpk|cbp143	pre-mRNA processing factor 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-6418358-3	chr10	6418246	6418446	+	702.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-340247.0	NM_001302794	18390.0	Mm.438000	NM_011013	ENSMUSG00000000766	Oprm1	M-OR-1|MOP-R|MOR-1|MOR-1O|Oprm|mor|muOR	opioid receptor, mu 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-55017588-2	chr13	55017457	55017657	+	984.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001206392, intron 1 of 17)	intron (NM_001206392, intron 1 of 17)	3262.0	NM_001206390	212032.0	Mm.267479	NM_001033245	ENSMUSG00000025877	Hk3	HK III|HK-III	hexokinase 3	protein-coding	1.36145682250665	2.12179461616193	1.64854226483378	1.43507719927514	1.88397884760026	2.67590002032821	1.0308713085976	1.24724504460963	0.582140949248536	0.607613650871025	0.974576632476413
Merged-chr5-115434969-2	chr5	115434869	115435069	+	608.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008629, intron 5 of 14)	intron (NM_008629, intron 5 of 14)	5284.0	NM_008629	17690.0	Mm.5077	NM_008629	ENSMUSG00000054256	Msi1	Msi1h|Musahi1|m-Msi-1	musashi RNA-binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81851641-2	chr15	81851454	81851654	+	765.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_020507, exon 2 of 2)	exon (NM_020507, exon 2 of 2)	6772.0	NM_020507	57259.0	Mm.323595	NM_020507	ENSMUSG00000048546	Tob2	2900090N22Rik|4930545K18Rik|AV071822|mKIAA1663	transducer of ERBB2, 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-52124122-4	chr14	52124015	52124215	+	740.733337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168515, intron 6 of 24)	B3|SINE|B2	13212.0	NM_023879	77945.0	Mm.21662	NM_023879	ENSMUSG00000057132	Rpgrip1	0610005A07Rik|4930401L23Rik|4930505G06Rik|A930002K18Rik|AA415034|nmf247	retinitis pigmentosa GTPase regulator interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-55511100-2	chr13	55511000	55511200	+	676.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114088, intron 2 of 12)	intron (NM_001114088, intron 2 of 12)	2346.0	NM_026131	67399.0	Mm.275648	NM_026131	ENSMUSG00000021493	Pdlim7	LMP	PDZ and LIM domain 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131555320-4	chr1	131555223	131555423	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27420.0	NM_175382	108900.0	Mm.31278	NM_175382	ENSMUSG00000055184	Fam72a	2700049P18Rik|P17	family with sequence similarity 72, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-83278545-4	chr17	83278592	83278792	+	804.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	63409.0	NM_134117	106522.0	Mm.311974	NM_134117	ENSMUSG00000024247	Pkdcc	AI115348|AW548124|Adtk1|ESTM17|MAd1|Sgk493|Vlk|X83346	protein kinase domain containing, cytoplasmic	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-8529404-2	chr10	8529304	8529504	+	597.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10579.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-90144319-1	chr7	90144219	90144419	+	738.0	f1_balb.idr	intron (NM_001360867, intron 1 of 19)	intron (NM_001360867, intron 1 of 19)	14106.0	NM_001252520	233489.0	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	0.143131002675034	1.14939413283056	0.35647452337488	0.623909647530775	0.144633957506907	0.565578137784551	0.160879618402406	0.154230351529128	-2.50146084774677	0.212158579175211	1
Merged-chr5-66238442-1	chr5	66238342	66238542	+	581.0	f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-21456.0	NM_001302833	70918.0	Mm.23166	NM_027602	ENSMUSG00000029206	Nsun7	4921525L17Rik	NOL1/NOP2/Sun domain family, member 7	protein-coding	-0.18730297320222	-0.163902529970634	-0.17144478347036	-0.177344684684473	-0.185808220143374	1.00121737178733	-0.16977128815242	0.471076896216739	4.22828606991509	0.0653838858217297	1
Merged-chr11-88981558-1	chr11	88981458	88981658	+	544.0	f1_balb.idr	exon (NM_016706, exon 2 of 7)	exon (NM_016706, exon 2 of 7)	7623.0	NM_016706	12812.0	Mm.268004	NM_016706	ENSMUSG00000033983	Coil	C79982|Cln80|p80|p80-coilin	coilin	protein-coding	0.564366559992736	0.0883747658443378	0.557732763005649	0.0769670516227048	0.0699011819413251	0.0898202211140771	0.0833662549027339	0.917226943791362	0.0974094885624953	0.964125888167449	1
Merged-chr4-32658134-2	chr4	32658034	32658234	+	951.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081392, intron 1 of 101)	URR1B|DNA|hAT-Charlie	1015.0	NM_001081392	100019.0	Mm.24627	NM_133874	ENSMUSG00000058006	Mdn1	4833432B22Rik|A130070M06|AA958993|D4Abb1e|Gm135	midasin AAA ATPase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-144138804-3	chr3	144138698	144138898	+	862.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER20B|DNA|hAT-Charlie	63534.0	NM_001161770	16911.0	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-160242379-2	chr2	160242279	160242479	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	85115.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-86885615-2	chr12	86885515	86885715	+	676.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145836)	promoter-TSS (NM_145836)	-801.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-122840425-3	chr4	122840331	122840531	+	878.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008917, intron 1 of 8)	L1MB5|LINE|L1	4204.0	NM_008917	19063.0	Mm.277719	NM_008917	ENSMUSG00000028657	Ppt1	9530043G02Rik|AA960502|C77813|CLN1|D4Ertd184e|INCL|PPT	palmitoyl-protein thioesterase 1	protein-coding	0.535301415089638	0.405215610049996	0.396687082563887	1.31714709287888	0.676189460410551	0.79251393875685	0.398573881263661	0.968992588659243	-0.0892360987384587	0.958490224784046	1
Merged-chr10-19559941-4	chr10	19559848	19560048	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32001.0	NM_010511	15979.0	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	5.43702278566804	5.56530315014469	5.57107058711955	3.7949690498935	5.33863509661577	4.66340815676921	5.6328965206906	5.69912881084239	0.161767689289814	0.674451464591835	0.99440487726309
Merged-chr8-56301968-4	chr8	56301865	56302065	+	709.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008278, intron 3 of 6)	intron (NM_008278, intron 3 of 6)	7413.0	NM_008278	15446.0	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-96164570-2	chr10	96164470	96164670	+	647.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-61637.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167378350-2	chr2	167378250	167378450	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29172.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-4734291-4	chr15	4734180	4734380	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016704, intron 3 of 15)	intron (NM_016704, intron 3 of 15)	7070.0	NM_016704	12274.0	Mm.20247	NM_016704	ENSMUSG00000022181	C6	AW111623	complement component 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118158369-2	chr11	118158269	118158469	+	732.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29150.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28965453-2	chr7	28965353	28965553	+	592.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3121.0	NM_001360548	60595.0	Mm.81144	NM_021895	ENSMUSG00000054808	Actn4	C77391	actinin alpha 4	protein-coding	0.19598855281369	0.0880368488991952	0.476710606888736	0.220233624887852	0.308651014733618	0.0889480367243568	0.484971536675814	0.222785612376999	0.262700177914831	0.888331963810181	1
Merged-chr17-35836385-4	chr17	35836280	35836480	+	959.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011655, intron 2 of 3)	intron (NM_011655, intron 2 of 3)	1921.0	NM_011655	22154.0	Mm.273538	NM_011655	ENSMUSG00000001525	Tubb5	AA408537|AI596182|B130022C14Rik|M(beta)5	tubulin, beta 5 class I	protein-coding	1.56457332232202	1.17016515284364	0.947591120478663	1.97162081464418	0.702203071829228	0.747810143422467	0.954551867257412	1.24460679878274	-2.28424129894342	0.106423937850778	0.509255945094508
Merged-chr4-147938917-3	chr4	147938822	147939022	+	944.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1973.0	NM_029841	77034.0	Mm.183076	NM_029841	ENSMUSG00000044496	2510039O18Rik	Kiaa2013	RIKEN cDNA 2510039O18 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-90323437-4	chr3	90323351	90323551	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18203.0	NM_139304	229542.0	Mm.270999	NM_139304	ENSMUSG00000042390	Gatad2b	AL118180|C430014D17Rik|P66beta|mKIAA1150	GATA zinc finger domain containing 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171001974-2	chr1	171001874	171002074	+	590.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C|LTR|ERVK	-16952.0	NM_144559	246256.0	Mm.251254	NM_144559	ENSMUSG00000059089	Fcgr4	4833442P21Rik|CD16-2|FcgRIV|FcgammaRIV|Fcgr3a|Fcrl3	Fc receptor, IgG, low affinity IV	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-13870772-3	chr10	13870675	13870875	+	781.277771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_152745)	promoter-TSS (NR_152745)	-505.0	NR_152745	102634635.0		NR_152745	ENSMUSG00000112172	Gm32172	-	predicted gene, 32172	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-121334476-4	chr1	121334383	121334583	+	949.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-1894.0	NM_178082	72999.0	Mm.27136	NM_133748	ENSMUSG00000003721	Insig2	2900053I11Rik|C730043J18Rik|Insig-2	insulin induced gene 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91987749-4	chr2	91987637	91987837	+	926.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011957, intron 8 of 11)	intron (NM_011957, intron 8 of 11)	-24174.0	NM_138306	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-148645066-4	chr6	148644970	148645170	+	968.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	-30761.0	NR_045867	622319.0	Mm.491049	NM_001037912	ENSMUSG00000070995	Gm6313	EG622319	predicted gene 6313	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-45925760-2	chr11	45925660	45925860	+	886.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER135|DNA|DNA	19175.0	NM_028185	72290.0	Mm.249827	NM_028185	ENSMUSG00000044847	Lsm11	2210404M20Rik|AV079530	U7 snRNP-specific Sm-like protein LSM11	protein-coding	-1.53362919331644	-1.50201671710775	-1.51157659084044	-1.08120497225282	-1.53141005593807	-1.49994505258991	-1.50941244497383	-1.51802371459528	-1.94474658522739	0.577200604274218	1
Merged-chr10-122047347-3	chr10	122047149	122047349	+	937.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001242411)	promoter-TSS (NM_001242411)	66.0	NM_001242411	117600.0	Mm.288698	NM_001081037	ENSMUSG00000020121	Srgap1	4930572H05Rik|Arhgap13	SLIT-ROBO Rho GTPase activating protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-14200506-3	chr10	14200366	14200566	+	656.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	234087.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70897919-4	chr11	70897814	70898014	+	853.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019400, intron 5 of 17)	intron (NM_019400, intron 5 of 17)	53153.0	NM_001291142	54189.0	Mm.7087	NM_019400	ENSMUSG00000020817	Rabep1	Rab5ep|rabaptin-5|rabaptin-5alpha	rabaptin, RAB GTPase binding effector protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115250260-3	chr11	115250099	115250299	+	841.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010350, exon 15 of 15)	exon (NM_010350, exon 15 of 15)	17044.0	NM_010350	14813.0	Mm.39090	NM_010350	ENSMUSG00000020734	Grin2c	GluN2C|NMDAR2C|NR2C	glutamate receptor, ionotropic, NMDA2C (epsilon 3)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-18031731-2	chr6	18031631	18031831	+	843.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1286.0	NM_023653	22413.0	Mm.33653	NM_023653	ENSMUSG00000010797	Wnt2	2610510E18Rik|Int1l1|Irp|Mirp|Wnt-2|Wnt2a	wingless-type MMTV integration site family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-155095442-2	chr1	155095342	155095542	+	748.400024	f1_balb.idr|f1_c57bl6.idr	TTS (NM_010500)	TTS (NM_010500)	4194.0	NM_010500	15939.0	Mm.12246	NM_010500	ENSMUSG00000056708	Ier5	-	immediate early response 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-98298963-4	chr9	98298875	98299075	+	896.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357445, intron 1 of 3)	intron (NM_001357445, intron 1 of 3)	2405.0	NM_001357451	74080.0	Mm.294082	NM_144533	ENSMUSG00000032456	Nmnat3	4933408N02Rik|PNAT3	nicotinamide nucleotide adenylyltransferase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-136061774-2	chr5	136061674	136061874	+	848.5833130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359361, intron 5 of 5)	intron (NM_001359361, intron 5 of 5)	4507.0	NM_001359361	69665.0	Mm.75713	NM_027158	ENSMUSG00000006143	Upk3bl	2310043J07Rik|Upk3bl1	uroplakin 3B-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100861448-2	chr11	100861348	100861548	+	612.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001164062, exon 2 of 18)	exon (NM_001164062, exon 2 of 18)	964.0	NM_001164062	20850.0	Mm.277403	NM_011488	ENSMUSG00000004043	Stat5a	AA959963|STAT5	signal transducer and activator of transcription 5A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-112728886-4	chr6	112728776	112728976	+	975.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080448, intron 20 of 21)	intron (NM_080448, intron 20 of 21)	-32206.0	NM_001167730	58186.0	Mm.103812	NM_021385	ENSMUSG00000030254	Rad18	2810024C04Rik|Rad18sc	RAD18 E3 ubiquitin protein ligase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-43849420-3	chr5	43849332	43849532	+	720.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-19377.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-10356273-3	chr16	10356163	10356363	+	842.033325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-24978.0	NR_126064	381033.0	Mm.263108	NR_126064	ENSMUSG00000116270	Gm1600	Gm1776	predicted gene 1600	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80197502-2	chr7	80197402	80197602	+	853.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360135)	promoter-TSS (NM_001360135)	-939.0	NM_001360135	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80696121-4	chr10	80696015	80696215	+	963.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172457, intron 1 of 3)	intron (NM_172457, intron 1 of 3)	5705.0	NM_172457	208228.0	Mm.49309	NM_172457	ENSMUSG00000003348	Mob3a	5330417K06Rik|A630029F06|AV218468|Mobkl2a	MOB kinase activator 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-109608515-4	chr8	109608401	109608601	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_020046, exon 1 of 9)	5' UTR (NM_020046, exon 1 of 9)	172.0	NM_020046	56749.0	Mm.23894	NM_020046	ENSMUSG00000031730	Dhodh	2810417D19Rik|AI834883	dihydroorotate dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120766849-3	chr8	120766755	120766955	+	743.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28216.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-88899683-2	chr6	88899583	88899783	+	874.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008564)	promoter-TSS (NM_008564)	-903.0	NM_008564	17216.0	Mm.16711	NM_008564	ENSMUSG00000002870	Mcm2	AA959861|AW476101|BM28|CDCL1|Mcmd2|mKIAA0030	minichromosome maintenance complex component 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101725180-4	chr11	101725083	101725283	+	997.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7773.0	NM_144831	217207.0	Mm.28186	NM_144831	ENSMUSG00000034931	Dhx8	Ddx8|mDEAH6|mKIAA4096	DEAH (Asp-Glu-Ala-His) box polypeptide 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-4080423-4	chr11	4080316	4080516	+	867.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	15015.0	NM_026443	67900.0	Mm.41719	NM_026443	ENSMUSG00000004748	Mtfp1	1700020C11Rik|2610507A21Rik|AV005788|Mtp18	mitochondrial fission process 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-98762275-4	chr15	98762189	98762389	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007478, intron 1 of 4)	intron (NM_007478, intron 1 of 4)	703.0	NM_001355510	11842.0	Mm.221298	NM_007478	ENSMUSG00000051853	Arf3	5430400P17Rik|AI854770	ADP-ribosylation factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-34030690-4	chr11	34030584	34030784	+	890.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155520, intron 4 of 4)	intron (NR_155520, intron 4 of 4)	-16244.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-93305315-2	chr13	93305215	93305415	+	807.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_147176, intron 1 of 9)	intron (NM_147176, intron 1 of 9)	1558.0	NM_011982	26556.0	Mm.37533	NM_011982	ENSMUSG00000007617	Homer1	PSD-Zip45|SYN47|Ves-1|homer-1|vesl-1	homer scaffolding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-31064745-2	chr16	31064645	31064845	+	699.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_198626, intron 1 of 3)	MTE2a-int|LTR|ERVL-MaLR	16687.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-125783606-3	chr8	125783505	125783705	+	722.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175561, intron 25 of 33)	intron (NM_175561, intron 25 of 33)	49402.0	NM_001310688	66566.0	Mm.25296	NM_025636	ENSMUSG00000031851	Ntpcr	2310079N02Rik|AI449709	nucleoside-triphosphatase, cancer-related	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-110880211-4	chr9	110880135	110880335	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146228)	promoter-TSS (NM_146228)	61.0	NM_001146059	235633.0	Mm.86338	NM_146228	ENSMUSG00000044037	Als2cl	79H19D|79H19E|BC022645|D930044G19Rik|mRn.49018	ALS2 C-terminal like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24667655-3	chr17	24667499	24667699	+	914.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2088.0	NM_001348231	213753.0	Mm.219581	NM_183149	ENSMUSG00000041130	Zfp598	BC023040|Ntrap|Znf598	zinc finger protein 598	protein-coding	3.12344442038759	2.38603606727519	2.85417802518064	3.41571276714299	3.33360606368758	3.18271375308815	2.63171844012169	2.25126716620133	-0.142888408028308	0.837327942699482	0.998431161219273
Merged-chr2-4458484-4	chr2	4458389	4458589	+	943.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 2 of 23)	intron (NM_001177843, intron 2 of 23)	57513.0	NM_001177843	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-103102729-6	chr14	103102671	103102871	+	851.555542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3205.0	NM_001360342	50789.0	Mm.214746	NM_015822	ENSMUSG00000022124	Fbxl3	AU041772|AW212966|FBK|Fbl3a|Fbxl3a|Ovtm|Play68	F-box and leucine-rich repeat protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-102073212-2	chr15	102073112	102073312	+	957.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145625)	promoter-TSS (NM_145625)	-561.0	NM_145625	75705.0	Mm.290022	NM_145625	ENSMUSG00000058655	Eif4b	2310046H11Rik|AL024095|C85189|Eif4a2	eukaryotic translation initiation factor 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44392990-1	chr9	44392890	44393090	+	819.0	f1_balb.idr	TTS (NM_021395)	TTS (NM_021395)	-3937.0	NM_001293631	14385.0	Mm.30087	NM_008063	ENSMUSG00000032114	Slc37a4	100043178|G6PT|G6pt1|GSD-1b|mG6PT	solute carrier family 37 (glucose-6-phosphate transporter), member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-96326618-4	chr9	96326491	96326691	+	919.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37124.0	NM_001357213	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-109476657-2	chr11	109476557	109476757	+	631.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028710, intron 1 of 13)	intron (NM_028710, intron 1 of 13)	-3061.0	NM_001029842	104681.0	Mm.265874	NM_134038	ENSMUSG00000041920	Slc16a6	AW743111|ESTM12|MCT 6|MCT 7|MCT6	solute carrier family 16 (monocarboxylic acid transporters), member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70626314-4	chr8	70626202	70626402	+	917.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MERVK26-int|LTR|ERVK	5793.0	NM_011819	23886.0	Mm.31325	NM_011819	ENSMUSG00000038508	Gdf15	MIC-1|NAG-1|SBF	growth differentiation factor 15	protein-coding	2.65160476082692	1.48045771955899	2.18005352435416	4.04325283654934	3.4795822783597	3.88991353439565	2.54118155295213	1.67380972750661	0.305332296363023	0.731617130685375	0.998431161219273
Merged-chr11-79296315-2	chr11	79296216	79296416	+	925.083374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41621.0	NM_019653	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	2.66913710908693	2.07707670344407	1.33845366712632	2.46390720811605	3.00649706815539	2.85147883184642	1.34700384305447	2.47707457024614	0.687798513433114	0.477967456746823	0.928092227925527
Merged-chr13-37486462-3	chr13	37486349	37486549	+	864.966675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	141104.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	1.33451434814854	1.83566554941489	1.76723667919218	0.979080551794946	1.63124657310841	1.0278597330623	1.78257047825826	2.70006204796928	1.16707332999195	0.321771553110499	0.823903365381149
Merged-chr17-56440875-2	chr17	56440775	56440975	+	624.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252455, intron 6 of 27)	intron (NM_001252455, intron 6 of 27)	21346.0	NM_001252456	19280.0	Mm.258771	NM_011218	ENSMUSG00000013236	Ptprs	AL022616|PTP|PTP-NU3|PTPNU-3|PTPsigma|Ptpt9|R-PTP-S|RPTPsigma	protein tyrosine phosphatase, receptor type, S	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-102899861-2	chr2	102899769	102899969	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_001039150, intron 1 of 13)	intron (NM_001039150, intron 1 of 13)	1796.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	2.61431563638459	2.48260902931497	4.09443247997847	3.37510638932386	2.96650796187588	2.99101785572886	4.53292264647181	2.91080717947955	0.385427652139505	0.577361810804215	0.96585843058813
Merged-chr4-123977117-3	chr4	123977015	123977215	+	633.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1A|DNA|hAT-Charlie	59682.0	NM_017475	54170.0	Mm.220922	NM_017475	ENSMUSG00000028646	Rragc	AU041672|Gtr2|RAGC|TIB929|YGR163W	Ras-related GTP binding C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-77537165-4	chr14	77536989	77537189	+	867.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253759, intron 7 of 19)	intron (NM_001253759, intron 7 of 19)	-30221.0	NR_033141	629678.0	Mm.390721	NM_001037935	ENSMUSG00000067973	Gm6994	EG629678	predicted gene 6994	ncRNA	0.831707018280097	0.509223660741153	0.493916785527726	0.481790807623865	0.987171288097425	2.01514239781183	0.497331433493068	1.42703200482442	3.53641518184352	0.0359945222524389	0.268696812864635
Merged-chr1-86417783-2	chr1	86417683	86417883	+	785.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8546.0	NM_027966	71863.0	Mm.179627	NM_027966	ENSMUSG00000036574	Tex44	1700019O17Rik	testis expressed 44	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115004249-4	chr11	115004151	115004351	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2371.0	NM_134158	140497.0	Mm.2699	NM_134158	ENSMUSG00000044811	Cd300c2	CLM4|Cd300c|Cd300d|DIgR1|Igsf7|Lmir2|MAIR-II	CD300C molecule 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-54791245-3	chr12	54791161	54791361	+	751.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026998, intron 2 of 13)	RMER17D|LTR|ERVK	4401.0	NM_026998	72183.0	Mm.28240	NM_026998	ENSMUSG00000005656	Snx6	2010006G21Rik|2610032J07Rik|2810425K19Rik|AU018928|C85963	sorting nexin 6	protein-coding	2.36683677211412	2.22459813516452	2.9485163305011	2.69576468516182	2.58120646433168	2.88782457450904	1.77669484981391	2.79908014275631	-0.02091779496662	0.978773234504333	0.998431161219273
Merged-chr16-38566402-2	chr16	38566302	38566502	+	591.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026407, intron 2 of 8)	7SK|RNA|RNA	3588.0	NM_026407	67846.0	Mm.310476	NM_026407	ENSMUSG00000002845	Tmem39a	2610033C09Rik	transmembrane protein 39a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-61382962-2	chr9	61382862	61383062	+	575.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083928, intron 4 of 19)	intron (NM_001083928, intron 4 of 19)	10596.0	NM_001083927	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-26502490-3	chr2	26502410	26502610	+	792.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008714, intron 1 of 33)	CpG	1312.0	NM_008714	18128.0	Mm.290610	NM_008714	ENSMUSG00000026923	Notch1	9930111A19Rik|Mis6|N1|Tan1|lin-12	notch 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-32562621-4	chr9	32562539	32562739	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21187.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-77970647-4	chr10	77970529	77970729	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138301)	promoter-TSS (NM_138301)	-757.0	NM_138301	28240.0	Mm.276762	NM_138301	ENSMUSG00000009292	Trpm2	9830168K16Rik|C79133|LTRPC2|TRPC7|Trp7|Trrp7	transient receptor potential cation channel, subfamily M, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-34189128-2	chr8	34189028	34189228	+	635.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22416.0	NR_105820	102465211.0		NR_105820	ENSMUSG00000098785	Mir6395	Gm27561|mmu-mir-6395	microRNA 6395	ncRNA	-1.56355737717652	-1.81244775989375	-1.82128546162293	-1.82854501295842	-1.83962066705452	-1.81053259306168	-1.81928479966835	-1.82724555674025	-1.28500227969968	0.715751224811686	1
Merged-chr4-139640940-3	chr4	139640836	139641036	+	998.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175438, intron 9 of 14)	intron (NM_175438, intron 9 of 14)	-3106.0	NR_105987	102465617.0		NR_105987	ENSMUSG00000098569	Mir7020	Gm27759|mmu-mir-7020	microRNA 7020	ncRNA	3.27094971343446	2.19886503302447	2.3221053353458	1.47265549422318	4.31431380808308	2.81652064743245	4.70835609575747	4.76544687602148	2.75230334100105	6.54250468025216e-05	0.00218857726264866
Merged-chr12-79168539-3	chr12	79168456	79168656	+	998.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016800, intron 1 of 5)	intron (NM_016800, intron 1 of 5)	3902.0	NM_016800	53612.0	Mm.265929	NM_016800	ENSMUSG00000021124	Vti1b	AU015348|GES30|MVti1b|SNARE|Vti1-rp1	vesicle transport through interaction with t-SNAREs 1B	protein-coding	2.57835432351537	2.38519952453681	3.51540243573672	3.96797500813512	4.25802484834751	3.47319966790139	4.10734645892402	4.63037948489494	1.29545343244209	0.0243604318679967	0.20534646010695
Merged-chr2-131142797-4	chr2	131142690	131142890	+	906.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028306, intron 10 of 12)	intron (NM_028306, intron 10 of 12)	15378.0	NM_028306	72630.0	Mm.277465	NM_028306	ENSMUSG00000074793	Hspa12b	2700081N06Rik	heat shock protein 12B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-45238336-2	chr2	45238236	45238436	+	944.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-120894.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117338687-3	chr11	117338570	117338770	+	956.2000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113488, intron 1 of 9)	intron (NM_001113488, intron 1 of 9)	6357.0	NM_001113488	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-3004660-3	chr18	3004567	3004767	+	908.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	118745.0	NM_001167539	100312476.0	Mm.480293	NM_001167539	ENSMUSG00000091539	Vmn1r238	-	vomeronasal 1 receptor, 238	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-26862883-2	chr10	26862783	26862983	+	611.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_176837, intron 5 of 14)	intron (NM_176837, intron 5 of 14)	90371.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-57448837-2	chr17	57448737	57448937	+	680.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355722, intron 16 of 22)	B4A|SINE|B4	90151.0	NM_010130	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-16051900-2	chr17	16051800	16052000	+	549.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-225314.0	NM_178615	68799.0	Mm.293466	NM_178615	ENSMUSG00000048027	Rgmb	1110059F19Rik|DRAGON	repulsive guidance molecule family member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-108295362-4	chr4	108295248	108295448	+	820.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033634, intron 1 of 13)	intron (NM_001033634, intron 1 of 13)	5742.0	NM_001033634	414872.0	Mm.426241	NM_001033634	ENSMUSG00000034636	Zyg11b	1110046I03Rik|2810482G21Rik|D4Mgi23|Gm431|mKIAA1730	zyg-ll family member B, cell cycle regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-100474175-3	chr9	100474060	100474260	+	955.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033543, intron 2 of 6)	intron (NM_001033543, intron 2 of 6)	12313.0	NM_001033543	213208.0	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-131387734-4	chr6	131387644	131387844	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011733, intron 1 of 8)	intron (NM_011733, intron 1 of 8)	706.0	NM_139117	56449.0	Mm.458000	NM_011733	ENSMUSG00000030189	Ybx3	Csda|Dpba|MSY3|MSY4|Yb2|dbpA|oxyR	Y box protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-107758995-2	chr13	107758895	107759095	+	773.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 5 of 14)	intron (NM_145456, intron 5 of 14)	71598.0	NR_045900	72257.0	Mm.234155	NR_045900	ENSMUSG00000102000	1700006H21Rik	-	RIKEN cDNA 1700006H21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-57252798-4	chr12	57252714	57252914	+	861.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164370, intron 1 of 9)	L1_Mur3|LINE|L1	22389.0	NM_001164370	73490.0	Mm.268180	NM_001164370	ENSMUSG00000047022	Mipol1	1700081O04Rik|6030439O22Rik|AU021838|AW536152|D12Ertd19e	mirror-image polydactyly 1	protein-coding	-0.795614833823998	-0.786336807896898	-0.789385015939899	-0.791731170198697	-0.417731367456157	-0.784588885553199	-0.788713411686562	-0.258531662084455	3.1330601925306	0.28800364166158	1
Merged-chr15-67088303-1	chr15	67088203	67088403	+	561.5	f0_balb.idr	Intergenic	MER53|DNA|hAT	88579.0	NM_009177	20442.0	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55742648-4	chr19	55742545	55742745	+	798.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_138565, intron 1 of 15)	CpG	835.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-100424920-1	chr15	100424820	100425020	+	595.0	f1_balb.idr	intron (NR_040351, intron 1 of 2)	intron (NR_040351, intron 1 of 2)	1727.0	NR_040351	432982.0	Mm.234608	NM_001034883	ENSMUSG00000087444	Gm5475	EG432982	predicted gene 5475	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5496392-2	chr17	5496292	5496492	+	917.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	3792.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85599318-4	chr12	85599220	85599420	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030887)	promoter-TSS (NM_030887)	-96.0	NM_030887	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-116487019-4	chr6	116486932	116487132	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA4|LINE|L1	-6579.0	NM_146912	258914.0	Mm.391507	NM_146912	ENSMUSG00000053391	Olfr211	MOR253-9	olfactory receptor 211	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-63150110-2	chr15	63150000	63150200	+	815.666626	f0_balb.idr|f1_balb.idr	Intergenic	L3|LINE|CR1	329508.0	NR_045279	432958.0	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	2.21096343117116	1.5713405471666	1.80380016170508	3.43692225508574	3.153914286751	3.53878999119299	3.34473743779194	3.8874273574526	1.71127622713373	0.0245681704748391	0.206710315117195
Merged-chr4-62869805-2	chr4	62869709	62869909	+	714.75	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-95765.0	NM_028326	72701.0	Mm.26479	NM_028326	ENSMUSG00000028358	Zfp618	2810031P15Rik|2810040O04Rik|AI415580|AI505139|D430033D05Rik|Nedd10|Znf618|bM257P7.1	zinc finger protein 618	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-108847023-2	chr9	108846923	108847123	+	738.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359572, intron 33 of 35)	intron (NM_001359572, intron 33 of 35)	-7020.0	NM_134420	171429.0	Mm.45201	NM_134420	ENSMUSG00000023259	Slc26a6	B930010B04Rik|CFEX|Pat-1|Pat1	solute carrier family 26, member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-122234427-2	chr2	122234328	122234528	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146126)	promoter-TSS (NM_146126)	-411.0	NM_146126	20322.0	Mm.371580	NM_146126	ENSMUSG00000027227	Sord	Sdh-1|Sdh1|Sodh-1	sorbitol dehydrogenase	protein-coding	1.10419774991426	1.61315764807404	1.55362049657074	2.54843935982963	1.87968682436521	0.97198420246587	0.950054643986058	1.65433607028156	-1.13593607028546	0.357083533404489	0.853942173366938
Merged-chr3-138512669-2	chr3	138512569	138512769	+	875.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13522.0	NM_007917	13684.0	Mm.3941	NM_007917	ENSMUSG00000028156	Eif4e	EG668879|Eif4e-ps|If4e|eIF-4E	eukaryotic translation initiation factor 4E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-98041867-4	chr16	98041761	98041961	+	808.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40578.0	NR_015491	320586.0	Mm.442230	NR_015491		A630089N07Rik	-	RIKEN cDNA A630089N07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-114618928-2	chr5	114618828	114619028	+	776.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39493.0	NM_022017	63873.0	Mm.266450	NM_022017	ENSMUSG00000014158	Trpv4	0610033B08Rik|OTRPC4|Trp12|VR-OAC|VRL-2|VROAC	transient receptor potential cation channel, subfamily V, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-173308491-2	chr2	173308391	173308591	+	895.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31958.0	NM_022995	65112.0	Mm.73682	NM_022995	ENSMUSG00000038400	Pmepa1	2210418I02Rik|AW455466|Erg1.2|N4wbp4|Stag1|Tmepai	prostate transmembrane protein, androgen induced 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-77092642-4	chr12	77092544	77092744	+	922.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-130396.0	NM_001146176	17187.0	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-54216745-2	chr13	54216645	54216845	+	707.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_153432, intron 2 of 3)	B3|SINE|B2	24612.0	NR_153432	15466.0	Mm.57243	NM_008286	ENSMUSG00000034987	Hrh2	H2R|HH2R	histamine receptor H2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32876875-3	chr2	32876764	32876964	+	787.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146119, intron 1 of 13)	intron (NM_146119, intron 1 of 13)	730.0	NM_146119	227737.0	Mm.301646	NM_146119	ENSMUSG00000026796	Fam129b	9130404D14Rik	family with sequence similarity 129, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-79411599-1	chr15	79411499	79411699	+	898.0	f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-8296.0	NM_172608	223693.0	Mm.323358	NM_172608	ENSMUSG00000009035	Tmem184b	2610507A11|4732495E13Rik	transmembrane protein 184b	protein-coding	1.07127084593943	0.665309105520766	0.652908258276775	1.37060961916399	0.953347613511442	1.24152225597016	1.71787275420106	0.644901372462181	0.929707287473169	0.539479431035468	0.954403851908463
Merged-chr2-160729161-2	chr2	160729061	160729261	+	863.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2149.0	NM_021280	18803.0	Mm.44463	NM_021280	ENSMUSG00000016933	Plcg1	AI894140|Cded|Plc-1|Plc-gamma1|Plcg-1	phospholipase C, gamma 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106074254-2	chr11	106074154	106074354	+	598.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_027346)	TTS (NM_027346)	8147.0	NM_027346	70207.0	Mm.343857	NM_027346	ENSMUSG00000001983	Taco1	2310066I18Rik|Ccdc44	translational activator of mitochondrially encoded cytochrome c oxidase I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124327591-4	chr5	124327492	124327692	+	891.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028310)	promoter-TSS (NM_028310)	380.0	NM_001081323	269702.0	Mm.60224	NM_001081323	ENSMUSG00000038126	Mphosph9	4930548D04Rik|9630025B04Rik|AW413446|AW547060|B930097C17Rik|C87456|MPP-9|MPP9	M-phase phosphoprotein 9	protein-coding	4.13569571072604	4.11060821025481	4.41372002060228	4.34824384769669	5.09724626913265	5.04174706781576	4.07660277450142	4.41945961761049	0.597156658821247	0.136316853385264	0.576431957324856
Merged-chr7-141326797-2	chr7	141326697	141326897	+	913.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001282073, intron 1 of 11)	intron (NM_001282073, intron 1 of 11)	928.0	NM_016874	54006.0	Mm.28392	NM_016874	ENSMUSG00000058886	Deaf1	AU042387|C230009B13Rik|NUDR	DEAF1, transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53118927-4	chr4	53118813	53119013	+	921.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 5 of 49)	intron (NM_013454, intron 5 of 49)	40982.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0.481587594542448	0.162732940657459	0.158254935799747	0.298254178845671	0.150042565986858	0.716072735572906	0.672981690678563	0.155427944433042	1.39897120805315	0.494542425786332	1
Merged-chr16-55820690-4	chr16	55820590	55820790	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159395, intron 2 of 12)	intron (NM_001159395, intron 2 of 12)	1448.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-107304724-2	chr11	107304624	107304824	+	812.666626	f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 4 of 9)	intron (NR_153311, intron 4 of 9)	-115343.0	NM_001161329	68979.0	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-81541260-2	chr18	81541160	81541360	+	768.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	450820.0	NR_039589	100628596.0		NR_039589	ENSMUSG00000093036	Mir5127	mmu-mir-5127|mu-mir-5127	microRNA 5127	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-64142154-1	chr7	64142054	64142254	+	1000.0	f0_c57.idr	Intergenic	Intergenic	-11681.0	NM_001039104	17364.0	Mm.38875	NM_018752	ENSMUSG00000030523	Trpm1	4732499L03Rik|AI606771|Ltrpc1|Mlsn1	transient receptor potential cation channel, subfamily M, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55866433-4	chr19	55866323	55866523	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_138565, intron 4 of 15)	intron (NR_138565, intron 4 of 15)	-28898.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150341392-2	chr4	150341299	150341499	+	817.25	f0_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 1 of 22)	MTA_Mm|LTR|ERVL-MaLR	59483.0	NM_001085492	68703.0	Mm.291274	NM_001085492	ENSMUSG00000039852	Rere	1110033A15Rik|AI414665|ARG|ARP|ATN1L|AW742570|Atr2|DNB1|eye<m03Jus>|eyes3|mKIAA0458	arginine glutamic acid dipeptide (RE) repeats	protein-coding	0.816551258104091	0.293971417008532	1.05047569338151	1.34366175737428	0.266553790347749	0.296084051634628	0.286615793933861	0.278431278320432	-4.51645314990893	0.0176347978808378	1
Merged-chr18-53227767-4	chr18	53227640	53227840	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17922.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-93162156-4	chr2	93162068	93162268	+	886.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-25380.0	NM_001356536	277414.0	Mm.41033	NM_001025246	ENSMUSG00000068735	Trp53i11	Tp53i11	transformation related protein 53 inducible protein 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126117056-3	chr7	126116933	126117133	+	803.366638	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028816, intron 14 of 23)	intron (NM_028816, intron 14 of 23)	-34622.0	NM_001358885	269994.0	Mm.39599	NM_001101488	ENSMUSG00000046182	Gsg1l	AI852434|C230098I05Rik|G630023A01Rik|Gm637|g1l	GSG1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-41755531-4	chr4	41755438	41755638	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302511)	promoter-TSS (NM_001302511)	234.0	NR_155499	105247116.0	Mm.488220	NR_155499		Gm42274	-	predicted gene, 42274	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52631672-2	chr13	52631572	52631772	+	926.333374	f1_balb.idr|f1_c57bl6.idr	exon (NM_001198977, exon 8 of 14)	exon (NM_001198977, exon 8 of 14)	34790.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-108179722-2	chr10	108179622	108179822	+	641.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027892, intron 1 of 25)	intron (NM_027892, intron 1 of 25)	17322.0	NM_027892	17931.0	Mm.422959	NM_027892	ENSMUSG00000019907	Ppp1r12a	1200015F06Rik|5730577I22Rik|AA792106|AV099298|D10Ertd625e|Mypt1	protein phosphatase 1, regulatory (inhibitor) subunit 12A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-88450288-4	chr4	88450159	88450359	+	962.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11333.0	NM_025760	66775.0	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-117027341-4	chr2	117027246	117027446	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-93725.0	NM_001277256	114715.0	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-25663858-2	chr14	25663758	25663958	+	874.8333130000001	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001310666, exon 24 of 24)	3' UTR (NM_001310666, exon 24 of 24)	-30312.0	NM_134084	105675.0	Mm.41656	NM_134084	ENSMUSG00000021868	Ppif	AW457192|CyP-D|CyP-F|CypD|PPIase	peptidylprolyl isomerase F (cyclophilin F)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-118152557-2	chr4	118152466	118152666	+	998.5	f0_balb.idr|f0_c57.idr	intron (NM_001161823, intron 12 of 21)	intron (NM_001161823, intron 12 of 21)	-17620.0	NM_001161774	20441.0	Mm.251002	NM_009176	ENSMUSG00000028538	St3gal3	ST3GalIII|ST3N|Siat3|Siat6	ST3 beta-galactoside alpha-2,3-sialyltransferase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167741797-2	chr2	167741697	167741897	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50620.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118637023-2	chr9	118636923	118637123	+	553.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 4 of 27)	MIR3|SINE|MIR	30314.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-41810481-4	chr10	41810373	41810573	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001243075)	promoter-TSS (NM_001243075)	-101.0	NM_001162908	140742.0	Mm.139418	NM_001013370	ENSMUSG00000038332	Sesn1	1110002G11Rik|AU044290|Pa26|Sest1	sestrin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-114130071-2	chr5	114129971	114130171	+	802.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001040691)	promoter-TSS (NM_001040691)	-364.0	NM_001040691	22256.0	Mm.1393	NM_011677	ENSMUSG00000029591	Ung	UNG1|UNG2	uracil DNA glycosylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-37146965-3	chr9	37146836	37147036	+	855.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029838, intron 1 of 12)	(CCTCG)n|Simple_repeat|Simple_repeat	386.0	NM_148950	208076.0	Mm.260335	NM_148950	ENSMUSG00000035934	Pknox2	D230005H23Rik|Prep2	Pbx/knotted 1 homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-62137923-3	chr15	62137786	62137986	+	764.805542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132746, intron 2 of 6)	intron (NR_132746, intron 2 of 6)	81565.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-47546328-1	chr9	47546228	47546428	+	570.0	f0_balb.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	15976.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	0.0518665061384253	0.551136129680383	0.0629570574765248	0.0587839866745256	0.196005268351031	0.560543443682159	0.0641508810579067	0.587966884604371	1.28792912862539	0.537697954817722	1
Merged-chr3-130804023-3	chr3	130803937	130804137	+	897.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73639.0	NM_001005859	68436.0	Mm.140568	NM_026724	ENSMUSG00000062006	Rpl34	1100001I22Rik	ribosomal protein L34	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-92491931-2	chr5	92491821	92492021	+	817.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007644, intron 1 of 11)	intron (NM_007644, intron 1 of 11)	13736.0	NM_007644	12492.0	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	0.957557345607731	0.471305254301705	0.462207349843961	1.38884457344607	0.743282031244863	1.0103591722947	0.660539141158304	0.456371308233014	-0.79143949958334	0.635652151079185	1
Merged-chr6-31067745-2	chr6	31067645	31067845	+	630.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4652.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-113844833-2	chr13	113844733	113844933	+	705.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172595, intron 1 of 4)	intron (NM_172595, intron 1 of 4)	50325.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-73908644-3	chr16	73908539	73908739	+	924.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358493, intron 25 of 28)	intron (NM_001358493, intron 25 of 28)	433428.0	NR_030464	751561.0		NR_030464	ENSMUSG00000104758	Mir691	Mirn691|mir-691|mmu-mir-691	microRNA 691	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-75501001-4	chr7	75500912	75501112	+	952.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 1 of 36)	MTE2a|LTR|ERVL-MaLR	45478.0	NM_029332	75547.0	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-40499706-2	chr12	40499606	40499806	+	896.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	53653.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-93334523-4	chr2	93334435	93334635	+	998.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183180)	promoter-TSS (NM_183180)	-48.0	NM_183180	241556.0	Mm.274159	NM_183180	ENSMUSG00000027217	Tspan18	2610042G18Rik|6720430O15|BB226562	tetraspanin 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-140903417-3	chr7	140903317	140903517	+	835.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2647.0	NR_015583	212965.0	Mm.387212	NR_015583	ENSMUSG00000109628	BC024386	BC039766	cDNA sequence BC023486	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-119895281-1	chr7	119895181	119895381	+	565.0	f1_c57bl6.idr	promoter-TSS (NM_001285959)	promoter-TSS (NM_001285959)	177.0	NM_173408	233805.0	Mm.31539	NM_173408	ENSMUSG00000048787	Dcun1d3	1700020A13Rik|BC030335	DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100507417-2	chr7	100507410	100507610	+	602.349976	f1_balb.idr|f1_c57bl6.idr	exon (NM_153527, exon 4 of 8)	exon (NM_153527, exon 4 of 8)	7305.0	NM_153527	69387.0	Mm.278554	NM_153527	ENSMUSG00000030708	Dnajb13	1700014P03Rik|Tsarg	DnaJ heat shock protein family (Hsp40) member B13	protein-coding	0.535756731833313	1.71005479555802	0.57872685653814	0.810224791077735	1.47655479644463	2.27273998379365	0.583130084760354	0.565793432523384	1.3078916850577	0.402219455814277	0.887644824805585
Merged-chr14-49019978-4	chr14	49019859	49020059	+	998.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207214, intron 13 of 17)	intron (NM_207214, intron 13 of 17)	-46590.0	NM_001360070	74385.0	Mm.379235	NM_144535	ENSMUSG00000036291	Ap5m1	4932432K03Rik|Mu5|Mudeng	adaptor-related protein complex 5, mu 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-92459642-1	chr16	92459542	92459742	+	1000.0	f1_balb.idr	intron (NM_001081549, intron 1 of 3)	intron (NM_001081549, intron 1 of 3)	6527.0	NM_001081549	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-13432199-4	chr2	13432099	13432299	+	753.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081084, intron 22 of 66)	intron (NM_001081084, intron 22 of 66)	59677.0	NM_001081084	65969.0	Mm.313915	NM_001081084	ENSMUSG00000026726	Cubn	AA408369|AL022750|D2Wsu88e	cubilin (intrinsic factor-cobalamin receptor)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-149712868-2	chr4	149712768	149712968	+	642.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11239.0	NM_001029837	18707.0	Mm.229108	NM_008840	ENSMUSG00000039936	Pik3cd	2410099E07Rik|2610208K16Rik|AW545373|p110delta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-135581300-3	chr7	135581195	135581395	+	799.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316678, intron 1 of 19)	intron (NM_001316678, intron 1 of 19)	-12186.0	NM_001316680	19267.0	Mm.945	NM_011212	ENSMUSG00000041836	Ptpre	PTPe|PTPepsilon|RPTPepsilon	protein tyrosine phosphatase, receptor type, E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-128412169-3	chr7	128412056	128412256	+	880.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026418, intron 1 of 4)	intron (NM_026418, intron 1 of 4)	6016.0	NM_026418	67865.0	Mm.18635	NM_026418	ENSMUSG00000030844	Rgs10	2310010N19Rik	regulator of G-protein signalling 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-54876897-6	chr14	54876857	54877057	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001167908, exon 1 of 2)	exon (NM_001167908, exon 1 of 2)	581.0	NM_001167908	105651.0	Mm.297365	NM_001167908	ENSMUSG00000072494	Ppp1r3e	A630071A11Rik|AW049239|Gm1211	protein phosphatase 1, regulatory (inhibitor) subunit 3E	protein-coding	0.737743212686347	1.83852675406863	0.778519988929904	0.763524949053344	2.07477090592189	1.73671343206519	0.782738034089918	1.6039135721452	1.60966964216685	0.275335234333866	0.77982362793126
Merged-chr2-90476860-2	chr2	90476760	90476960	+	664.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	2314.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-145964187-4	chr3	145964070	145964270	+	941.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23700.0	NM_001166064	214804.0	Mm.268854	NM_001166064	ENSMUSG00000036863	Syde2	C430017H16Rik	synapse defective 1, Rho GTPase, homolog 2 (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-79612943-4	chr12	79612852	79613052	+	953.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	311781.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-74250318-4	chr1	74250235	74250435	+	963.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357387, intron 4 of 10)	intron (NM_001357387, intron 4 of 10)	13818.0	NM_029711	76709.0	Mm.337038	NM_029711	ENSMUSG00000006304	Arpc2	2210023N03Rik|34kDa|p34-Arc	actin related protein 2/3 complex, subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-117476772-4	chr12	117476664	117476864	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MARNA|DNA|TcMar-Mariner	-39715.0	NM_175930	217944.0	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding	5.26422143585126	4.49992499016166	5.41981308946863	4.82158769479213	5.39362812578717	4.91667356791632	5.73621948514631	4.92227591425052	0.274829805535758	0.417839139102313	0.897892655095441
Merged-chr6-3509930-1	chr6	3509830	3510030	+	570.0	f0_balb.idr	intron (NM_001167751, intron 2 of 26)	intron (NM_001167751, intron 2 of 26)	11537.0	NM_001167750	73288.0	Mm.45539	NM_024260	ENSMUSG00000001376	Vps50	1700034M03Rik|8430415E05Rik|BLM|C87205|Ccdc132|mKIAA1861	VPS50 EARP/GARPII complex subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-102247153-4	chr7	102247048	102247248	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019566, intron 1 of 1)	intron (NM_019566, intron 1 of 1)	2970.0	NM_019566	56212.0	Mm.259795	NM_019566	ENSMUSG00000073982	Rhog	2810426G09Rik|Arhg|Sid10750	ras homolog family member G	protein-coding	1.35989619511692	3.75536820254541	1.19773800606198	3.38314282441941	1.37405289214881	2.54709863501218	2.31215835574266	2.07736619112687	-1.38297105322763	0.166295308324554	0.631812823040522
Merged-chr9-37147458-3	chr9	37147356	37147556	+	769.733337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_148950)	promoter-TSS (NM_148950)	-134.0	NM_001029838	208076.0	Mm.260335	NM_148950	ENSMUSG00000035934	Pknox2	D230005H23Rik|Prep2	Pbx/knotted 1 homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-44003137-2	chr10	44003037	44003237	+	720.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_172393, intron 1 of 19)	intron (NM_172393, intron 1 of 19)	1709.0	NM_172393	11630.0	Mm.292082	NM_172393	ENSMUSG00000019866	Crybg1	AI462491|AI463325|Aim1	crystallin beta-gamma domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-151755179-4	chr1	151755079	151755279	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_151473)	promoter-TSS (NR_151473)	-161.0	NR_151473	102640772.0		NR_151473	ENSMUSG00000100594	2810414N06Rik	-	RIKEN cDNA 2810414N06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-149996878-1	chr3	149996778	149996978	+	833.0	f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	722141.0	NR_040591	381482.0	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA	1.14213018724811	2.97464081196347	2.05791091121962	1.84153221158364	2.34664711642835	2.83735768843866	2.34193289702885	1.19844599057602	0.261564209356466	0.803887491929579	0.998431161219273
Merged-chr7-16453421-4	chr7	16453348	16453548	+	854.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026938, intron 1 of 2)	intron (NM_026938, intron 1 of 2)	669.0	NM_026938	69094.0	Mm.29633	NM_026938	ENSMUSG00000019158	Tmem160	1810008O21Rik	transmembrane protein 160	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-121754961-1	chr7	121754861	121755061	+	571.0	f0_balb.idr	intron (NM_011326, intron 6 of 12)	intron (NM_011326, intron 6 of 12)	20482.0	NM_011326	20278.0	Mm.35247	NM_011326	ENSMUSG00000000216	Scnn1g	SCNEG	sodium channel, nonvoltage-gated 1 gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-109887382-2	chr2	109887282	109887482	+	598.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3496.0	NM_011699	22343.0	Mm.235300	NM_011699	ENSMUSG00000027162	Lin7c	9130007B12Rik|AI303698|AU019331|AW125731|D2Ertd520e|LIN-7-C|LIN-7C|MALS-3|Veli3	lin-7 homolog C (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-30365808-4	chr18	30365704	30365904	+	854.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	92939.0	NR_151699	225326.0	Mm.194127	NM_181414	ENSMUSG00000033628	Pik3c3	5330434F23Rik|Vps34	phosphatidylinositol 3-kinase catalytic subunit type 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-77174962-4	chr5	77174856	77175056	+	989.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36249.0	NM_001289767	69982.0	Mm.46106	NM_183284	ENSMUSG00000053030	Spink2	1700007F22Rik|AV038945|HUSI-II	serine peptidase inhibitor, Kazal type 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-63446106-1	chr14	63446006	63446206	+	692.0	f0_balb.idr	intron (NM_177628, intron 2 of 3)	intron (NM_177628, intron 2 of 3)	9712.0	NM_177628	219148.0	Mm.37882	NM_177628	ENSMUSG00000035095	Fam167a	A030013D21	family with sequence similarity 167, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140710408-2	chr5	140710308	140710508	+	564.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_074085, intron 3 of 12)	intron (NR_074085, intron 3 of 12)	5342.0	NM_001276287	231841.0	Mm.271932	NM_172724	ENSMUSG00000000148	Brat1	AA881470|Baat1	BRCA1-associated ATM activator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122557897-4	chr8	122557798	122557998	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	-6569.0	NM_001357349	234839.0	Mm.37324	NM_001037298	ENSMUSG00000014444	Piezo1	9630020g22|Fam38a|mKIAA0233	piezo-type mechanosensitive ion channel component 1	protein-coding	3.51784916501885	3.0095901178856	3.48399526848006	4.52572248373203	4.31427125103167	3.53530968823707	3.51213776529929	4.58315553230811	0.43109929177803	0.427425772598906	0.902392427013133
Merged-chr1-91498808-4	chr1	91498705	91498905	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028718, intron 2 of 14)	PB1D10|SINE|Alu	4137.0	NM_028718	74019.0	Mm.318430	NM_028718	ENSMUSG00000034292	Traf3ip1	3930402D05Rik|AU041749|MIP-T3	TRAF3 interacting protein 1	protein-coding	4.38263452969565	4.72880681105458	3.79193722805825	4.71374297559098	4.49448321578284	3.86724162317054	3.98071290719113	4.77198619585966	-0.146408424505365	0.731253007114808	0.998431161219273
Merged-chr11-11529317-4	chr11	11529122	11529322	+	768.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39956.0	NM_028669	73862.0	Mm.159077	NM_028669	ENSMUSG00000020191	Spata48	4930415F15Rik	spermatogenesis associated 48	protein-coding	1.66170986113445	1.98802747090022	1.91890702541131	1.96654726226571	1.55489460982578	1.13334472118261	2.04220803894528	1.30588516534164	-1.00604293400597	0.355843116003655	0.853664850644233
Merged-chr19-44284283-4	chr19	44284178	44284378	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-9398.0	NM_009128	20250.0	Mm.487021	NM_009128	ENSMUSG00000025203	Scd2	Mir5114|Scd-2|mir-5114|swty	stearoyl-Coenzyme A desaturase 2	protein-coding	5.49161788581328	5.39003784759336	5.01463575786338	5.1025175155114	4.90514521006524	5.45759399315412	5.51248135966469	5.62214008758676	0.148820937300984	0.61782428033702	0.977517868708383
Merged-chr17-57363031-4	chr17	57362940	57363140	+	815.450012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355722, intron 2 of 22)	RLTR22_Mur|LTR|ERVK	4354.0	NM_010130	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-84944236-3	chr15	84944188	84944388	+	880.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7335.0	NR_037206	100526461.0		NR_037206	ENSMUSG00000080441	Mir1249	mir-1249|mmu-mir-1249	microRNA 1249	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-110841586-4	chr9	110841471	110841671	+	837.966675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_153172)	TTS (NM_153172)	-2935.0	NM_183103	74306.0	Mm.87419	NM_183103	ENSMUSG00000049719	Prss46	1700112C13Rik|79H19B|Tessp6	protease, serine 46	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-64430274-3	chr18	64430184	64430384	+	819.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58814.0	NM_007998	14151.0	Mm.1070	NM_007998	ENSMUSG00000024588	Fech	AI894116|Fcl|fch	ferrochelatase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-96636661-4	chr9	96636519	96636719	+	958.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5116.0	NM_053268	114713.0	Mm.124502	NM_053268	ENSMUSG00000032413	Rasa2	5430433H21Rik|AA517451|AU023900|GAP1m	RAS p21 protein activator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-133467930-4	chr2	133467837	133468037	+	945.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-84222.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-123565815-3	chr4	123565723	123565923	+	860.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199137, intron 1 of 92)	intron (NM_001199137, intron 1 of 92)	-50597.0	NR_105824	102465214.0		NR_105824	ENSMUSG00000099005	Mir6398	Gm27657|mmu-mir-6398	microRNA 6398	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-142932478-4	chr5	142932363	142932563	+	975.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25709.0	NM_007393	11461.0	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128411620-4	chr10	128411504	128411704	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_104288)	promoter-TSS (NR_104288)	-12.0	NR_104288	67588.0	Mm.294120	NM_026259	ENSMUSG00000025373	Rnf41	2210404G21Rik|4930511A05Rik|4933415P08Rik|D10Ertd722e|FLRF|Nrdp1	ring finger protein 41	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-24975410-4	chr7	24975288	24975488	+	797.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2660.0	NM_010261	14470.0	Mm.22473	NM_010261	ENSMUSG00000003380	Rabac1	2310040I06Rik|Gbpap1|PRA1|prenylin	Rab acceptor 1 (prenylated)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-130816941-3	chr4	130816862	130817062	+	699.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011520, exon 2 of 5)	exon (NM_011520, exon 2 of 5)	24425.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-170252727-6	chr2	170252594	170252794	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-103667.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-134085996-2	chr1	134085896	134086096	+	694.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6841.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-108840650-4	chr3	108840582	108840782	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011504)	promoter-TSS (NM_011504)	-180.0	NM_011504	20912.0	Mm.316894	NM_011504	ENSMUSG00000027882	Stxbp3	Munc-18c|Stxbp3a|Sxtbp3|Unc18-3	syntaxin binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-72342072-2	chr8	72341972	72342172	+	743.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289859, intron 21 of 21)	intron (NM_001289859, intron 21 of 21)	23010.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	0.780762137007595	0.418996520974285	0.990765584568196	0.405496957104079	0.547373362615886	1.05393800785637	0.885541422172425	0.40652643583311	0.41201684968927	0.811133827433631	1
Merged-chr10-59325586-2	chr10	59325486	59325686	+	589.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001316370, intron 1 of 13)	intron (NM_001316370, intron 1 of 13)	2290.0	NM_001316370	18451.0	Mm.2212	NM_011030	ENSMUSG00000019916	P4ha1	AL022634|P4ha	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80074337-4	chr10	80074253	80074453	+	767.479187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359635, intron 4 of 31)	intron (NM_001359635, intron 4 of 31)	1086.0	NM_001359636	216161.0	Mm.262102	NM_183426	ENSMUSG00000035673	Sbno2	BC019206|F730040C21|Sno|Stno	strawberry notch 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-17566218-2	chr2	17566118	17566318	+	748.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028757, intron 3 of 6)	intron (NM_028757, intron 3 of 6)	2704.0	NR_105847	102465964.0		NR_105847	ENSMUSG00000099161	Mir6419	Gm27713|mmu-mir-6419	microRNA 6419	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-9392797-4	chr18	9392694	9392894	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026484, intron 1 of 9)	intron (NM_026484, intron 1 of 9)	57360.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	4.20790678499952	3.75785600671961	3.37954141561848	3.80055720731734	4.43989371241629	2.1221855387609	2.96110966404531	3.09892518133221	-0.526614837754388	0.411128499371816	0.894256659801134
Merged-chr4-119110294-2	chr4	119110170	119110370	+	962.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011400, intron 1 of 9)	intron (NM_011400, intron 1 of 9)	1525.0	NM_011400	20525.0	Mm.21002	NM_011400	ENSMUSG00000028645	Slc2a1	Glut-1|Glut1	solute carrier family 2 (facilitated glucose transporter), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-23498854-1	chr16	23498754	23498954	+	608.0	f1_c57bl6.idr	intron (NM_001359083, intron 2 of 10)	MIR3|SINE|MIR	21961.0	NM_008555	17174.0	Mm.1213	NM_008555	ENSMUSG00000022887	Masp1	AW048060|CCPII|Crarf|Masp1/3	mannan-binding lectin serine peptidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-62685663-2	chr18	62685563	62685763	+	573.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001168423, intron 1 of 4)	intron (NM_001168423, intron 1 of 4)	55724.0	NM_001168423	100038417.0	Mm.387557	NM_001168423	ENSMUSG00000073551	Spink13	Gm10534|Spink5l3	serine peptidase inhibitor, Kazal type 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33967473-3	chr16	33967336	33967536	+	656.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009471)	promoter-TSS (NM_009471)	-398.0	NM_009471	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-6242303-4	chr15	6242189	6242389	+	977.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57500.0	NM_001008702	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-8459347-3	chr16	8459234	8459434	+	742.638916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11479.0	NM_146247	239706.0	Mm.214953	NM_146247	ENSMUSG00000039345	Mettl22	-	methyltransferase like 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-64274817-7	chr13	64274703	64274903	+	970.789124	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_172587, exon 1 of 14)	5' UTR (NM_172587, exon 1 of 14)	185.0	NM_172587	218294.0	Mm.25335	NM_172587	ENSMUSG00000033102	Cdc14b	2810432N10Rik|A530086E13Rik|AA472821|CDC14B3|Cdc14B1	CDC14 cell division cycle 14B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-75709229-10	chr13	75709161	75709361	+	865.5599980000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138953, intron 1 of 11)	intron (NM_138953, intron 1 of 11)	1777.0	NM_138953	192657.0	Mm.21288	NM_138953	ENSMUSG00000001542	Ell2	-	elongation factor RNA polymerase II 2	protein-coding	0.624706257493649	1.21336615040541	1.28954472643694	0.639855764209139	1.27816412092356	0.885628647169106	1.60568072300565	0.641435417865643	0.762942302214713	0.622994034526296	0.980259659844413
Merged-chr11-72301593-4	chr11	72301510	72301710	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001037713)	promoter-TSS (NM_001037713)	-19.0	NM_001291153	327959.0	Mm.291131	NM_001037713	ENSMUSG00000040483	Xaf1	Fbox39	XIAP associated factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-116740220-2	chr13	116740120	116740320	+	546.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	97958.0	NR_153406	74680.0	Mm.488118	NR_153406	ENSMUSG00000114290	4930435F18Rik	-	RIKEN cDNA 4930435F18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81401891-4	chr10	81401795	81401995	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026756, intron 8 of 8)	intron (NM_026756, intron 8 of 8)	-7680.0	NR_152732	102634174.0	Mm.392213	NR_152732	ENSMUSG00000085327	Gm16104	-	predicted gene 16104	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78249933-2	chr15	78249833	78250033	+	704.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008677, intron 1 of 9)	ORR1F|LTR|ERVL-MaLR	5122.0	NM_008677	17972.0	Mm.2068	NM_008677	ENSMUSG00000071715	Ncf4	AI451400|p40phox	neutrophil cytosolic factor 4	protein-coding	0.340904209539784	-0.144859338400609	-0.150525546301601	-0.154915207511025	-0.00367983020997973	-0.143585628572863	0.75569506329499	-0.154147184345992	1.34548873778027	0.560032974328927	1
Merged-chr6-97365282-2	chr6	97365182	97365382	+	657.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 6 of 23)	PB1D9|SINE|Alu	94004.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-98087059-2	chr3	98086959	98087159	+	936.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010928, intron 5 of 33)	intron (NM_010928, intron 5 of 33)	73521.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80325684-2	chr10	80325584	80325784	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008793, intron 5 of 14)	intron (NM_008793, intron 5 of 14)	3789.0	NM_008793	18551.0	Mm.299916	NM_008793	ENSMUSG00000020131	Pcsk4	AI647044|L21221|NEC 3|NEC3|PC4|SPC5	proprotein convertase subtilisin/kexin type 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-116460580-2	chr7	116460480	116460680	+	711.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-17122.0	NM_011083	18704.0	Mm.3810	NM_011083	ENSMUSG00000030660	Pik3c2a	Cpk-m|PI3KC2	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-148440051-4	chr2	148439954	148440154	+	909.866699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010740, exon 2 of 2)	3' UTR (NM_010740, exon 2 of 2)	3481.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-37678479-2	chr1	37678379	37678579	+	591.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028096, intron 1 of 9)	intron (NM_028096, intron 1 of 9)	41332.0	NM_028096	72097.0	Mm.142607	NM_028096	ENSMUSG00000026090	2010300C02Rik	-	RIKEN cDNA 2010300C02 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-110448736-7	chr11	110448655	110448855	+	943.3952640000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356352, intron 1 of 11)	intron (NM_001356352, intron 1 of 11)	-29760.0	NM_001356347	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-113610733-2	chr5	113610633	113610833	+	796.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32870.0	NM_001359060	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133631612-4	chr4	133631498	133631698	+	808.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001017968, intron 1 of 7)	intron (NM_001017968, intron 1 of 7)	1831.0	NM_001017968	503610.0	Mm.331948	NM_001017968	ENSMUSG00000037553	Zdhhc18	-	zinc finger, DHHC domain containing 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55490631-3	chr14	55490529	55490729	+	873.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_155103)	promoter-TSS (NR_155103)	-22.0	NR_155103	268747.0	Mm.151577	NM_001024645	ENSMUSG00000022211	Carmil3	Lrrc16b|mFLJ00240	capping protein regulator and myosin 1 linker 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-136260543-3	chr4	136260449	136260649	+	673.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011542, intron 5 of 10)	intron (NM_011542, intron 5 of 10)	12592.0	NM_011542	21401.0	Mm.112	NM_011542	ENSMUSG00000001604	Tcea3	S-II|SII-K1	transcription elongation factor A (SII), 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-81380076-3	chr17	81379985	81380185	+	809.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_104580, exon 9 of 9)	non-coding (NR_104580, exon 9 of 9)	-315000.0	NM_028138	72167.0	Mm.273257	NM_028138	ENSMUSG00000024246	Thumpd2	2810025A12Rik	THUMP domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117989177-2	chr11	117989077	117989277	+	762.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_151726, intron 1 of 9)	B3A|SINE|B2	2320.0	NR_151726	74451.0	Mm.28864	NM_133757	ENSMUSG00000017715	Pgs1	2610019F11Rik|4933424M23Rik|SAF	phosphatidylglycerophosphate synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-154732937-2	chr2	154732836	154733036	+	756.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58174.0	NM_001139512	19383.0	Mm.221440	NM_023130	ENSMUSG00000027593	Raly	AI663842|Merc	hnRNP-associated with lethal yellow	protein-coding	2.23696799738571	2.40196751484993	1.76750119144103	1.88337638659728	2.6340598355293	2.41970168825406	2.09514297637528	1.54152547077319	0.355566829590252	0.697882814527955	0.998087997318924
Merged-chr6-28410211-3	chr6	28410097	28410297	+	914.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	11527.0	NM_028900	74375.0	Mm.332950	NM_028900	ENSMUSG00000029708	Gcc1	4932417P04Rik	golgi coiled coil 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85759016-3	chr12	85758925	85759125	+	803.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145447, intron 1 of 9)	intron (NM_145447, intron 1 of 9)	12486.0	NM_145447	217721.0	Mm.301076	NM_145447	ENSMUSG00000034258	Flvcr2	CCT|Mfsd7c	feline leukemia virus subgroup C cellular receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-25269844-4	chr15	25269750	25269950	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	143914.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-67584482-2	chr3	67584382	67584582	+	566.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025813, intron 1 of 15)	intron (NM_025813, intron 1 of 15)	1714.0	NM_025813	66868.0	Mm.491153	NM_025813	ENSMUSG00000027775	Mfsd1	1200003O06Rik	major facilitator superfamily domain containing 1	protein-coding	0.191493000478416	-0.0536335402296105	-0.235785155324632	-0.23873023861195	0.200963465391846	-0.0492711727766625	-0.234940767395031	-0.238216709920131	0.0411531507023232	0.985802846493344	1
Merged-chr3-20295123-4	chr3	20295026	20295226	+	984.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19393.0	NM_029706	76703.0	Mm.34692	NM_029706	ENSMUSG00000011463	Cpb1	0910001A18Rik|1810063F02Rik|2210008M23Rik|AI504870	carboxypeptidase B1 (tissue)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-146172444-4	chr6	146172318	146172518	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019923, intron 50 of 56)	intron (NM_019923, intron 50 of 56)	238296.0	NM_010656	16651.0	Mm.49689	NM_010656	ENSMUSG00000030255	Sspn	Krag	sarcospan	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126943104-2	chr8	126943004	126943204	+	543.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_024214, intron 1 of 4)	intron (NM_024214, intron 1 of 4)	2817.0	NM_024214	67952.0	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-137410680-4	chr6	137410568	137410768	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164403)	promoter-TSS (NM_001164403)	-53.0	NM_001164402	19277.0	Mm.186361	NM_011216	ENSMUSG00000030223	Ptpro	D28|GLEPP1|PTPBK|PTPROt|PTPU2|PTPoc|PTPphi|Ptpn15|R-PTP-O	protein tyrosine phosphatase, receptor type, O	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-66818274-2	chr1	66818149	66818349	+	915.166626	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_001122738)	promoter-TSS (NM_001122738)	-654.0	NM_001122738	68691.0	Mm.240912	NM_177645	ENSMUSG00000026004	Kansl1l	1110028C15Rik|1190030G24|AI427598|C430010P07Rik|mKIAA4189	KAT8 regulatory NSL complex subunit 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45173146-2	chr7	45173072	45173272	+	946.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_106022)	promoter-TSS (NR_106022)	-131.0	NR_106022	102465638.0		NR_106022	ENSMUSG00000106470	Mir7055	mmu-mir-7055	microRNA 7055	ncRNA	0.383981850473808	0.418793186143283	1.08192420902776	0.398834402350371	0.386215336005039	0.657764611556688	1.58065299090192	1.0440636966257	1.83760345678242	0.298011512990109	0.800257675359925
Merged-chr12-11178973-3	chr12	11178934	11179134	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25468.0	NR_131084	77442.0	Mm.159922	NR_131083	ENSMUSG00000112041	9530020I12Rik	-	RIKEN cDNA 9530020I12 gene	ncRNA	1.68294900766865	1.10236906919142	1.32083714057651	1.90163669473456	1.91841741568424	1.10774934948428	2.45941130403094	2.37826821176095	1.47063311286374	0.195547802354617	0.676523221640916
Merged-chr4-127148033-4	chr4	127147954	127148154	+	954.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21150.0	NM_198618	242667.0	Mm.331885	NM_198618	ENSMUSG00000042388	Dlgap3	BC058433|DAP-3|DAP3|Prpl8|Sapap3	DLG associated protein 3	protein-coding	0.119842499607176	0.114972613159589	-0.212723702227276	-0.215623780677847	0.0264312355668142	0.121849493078536	-0.211891791750452	-0.215118267202763	-0.231945306463385	0.919129645422941	1
Merged-chr8-69206590-4	chr8	69206442	69206642	+	890.587524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-2504.0	NM_001013379	234358.0	Mm.334577	NM_001013379	ENSMUSG00000059897	Zfp930	-	zinc finger protein 930	protein-coding	-1.52696403314699	-1.49523967873556	-1.5048333853602	-1.51271394162622	-1.52473704212565	-1.49316068248889	-1.50266158046844	-1.06847079017215	2.01069003169785	0.564432837776867	1
Merged-chr19-5692098-5	chr19	5691873	5692073	+	917.6611330000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022012, intron 3 of 11)	intron (NM_022012, intron 3 of 11)	2842.0	NM_022012	26403.0	Mm.185026	NM_022012	ENSMUSG00000004054	Map3k11	2610017K16Rik|Mlk3|PTK1|SPRK	mitogen-activated protein kinase kinase kinase 11	protein-coding	2.2333568340723	2.20121098173568	1.71854369026092	2.06469751893608	2.66224645389606	3.38219745374065	3.05810185116496	2.79883493643342	1.9547590038565	0.011411037892155	0.119328558364389
Merged-chr2-118746788-1	chr2	118746688	118746888	+	548.0	f0_c57.idr	3' UTR (NM_001301269, exon 1 of 1)	3' UTR (NM_001301269, exon 1 of 1)	1030.0	NM_001301269	100043272.0	Mm.398072	NM_001301269	ENSMUSG00000074918	Inafm2	5430417L22Rik	InaF motif containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-73558262-2	chr5	73558162	73558362	+	589.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_153313, exon 10 of 10)	non-coding (NR_153313, exon 10 of 10)	67236.0	NM_178896	100737.0	Mm.220312	NM_178896	ENSMUSG00000051674	Dcun1d4	AI836376	DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-60709756-2	chr13	60709656	60709856	+	564.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 3 of 26)	intron (NM_134062, intron 3 of 26)	76608.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128717623-3	chr2	128717535	128717735	+	729.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 1 of 18)	intron (NM_008587, intron 1 of 18)	18720.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-60835154-4	chr15	60835083	60835283	+	812.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-10103.0	NM_001162926	399603.0	Mm.411968	NM_207269	ENSMUSG00000072568	Fam84b	BF642811|D330050I23Rik	family with sequence similarity 84, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-80776040-4	chr17	80775932	80776132	+	798.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48007.0	NM_001290345	225028.0	Mm.311948	NM_001081357	ENSMUSG00000024242	Map4k3	4833416M01Rik|4833416M07Rik|9530052P13Rik|Glk|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1	mitogen-activated protein kinase kinase kinase kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-15863397-4	chr16	15863310	15863510	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029354)	promoter-TSS (NM_029354)	-41.0	NM_001359003	72083.0	Mm.22351	NM_029354	ENSMUSG00000022671	Mzt2	2410018G20Rik|2610001E06Rik|Fam128|Fam128b	mitotic spindle organizing protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-57117757-4	chr2	57117649	57117849	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001139509, intron 1 of 7)	intron (NM_001139509, intron 1 of 7)	-2711.0	NM_013613	18227.0	Mm.3507	NM_013613	ENSMUSG00000026826	Nr4a2	HZF-3|NOT|Nurr1|RNR-1|TINOR|TINUR	nuclear receptor subfamily 4, group A, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35090970-2	chr17	35090885	35091085	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178592, intron 2 of 19)	intron (NM_178592, intron 2 of 19)	1694.0	NM_178592	193742.0	Mm.43745	NM_178592	ENSMUSG00000007036	Abhd16a	AI326074|Bat-5|Bat5|D17H6S82E|NG26	abhydrolase domain containing 16A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-156200876-4	chr4	156200792	156200992	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015783)	promoter-TSS (NM_015783)	-74.0	NM_015783	100038882.0	Mm.4950	NM_015783	ENSMUSG00000035692	Isg15	G1p2|IGI15|IP17|Irfp|UCRP	ISG15 ubiquitin-like modifier	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-20394721-2	chr14	20394621	20394821	+	796.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_029698, intron 27 of 28)	intron (NM_029698, intron 27 of 28)	-1087.0	NM_025440	66242.0	Mm.23747	NM_025440	ENSMUSG00000049960	Mrps16	1500011E11Rik|Mprs16|S16mt	mitochondrial ribosomal protein S16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-66975423-4	chr9	66975324	66975524	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030717)	promoter-TSS (NM_030717)	60.0	NM_030717	80907.0	Mm.157882	NM_030717	ENSMUSG00000032370	Lactb	LACT-1|Lact1|Mrpl56	lactamase, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-24038401-4	chr5	24038292	24038492	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7702.0	NM_053090	84652.0	Mm.304976	NM_053090	ENSMUSG00000028995	Fam126a	AB030242|Drctnnb1a	family with sequence similarity 126, member A	protein-coding	4.9828388208272	4.13284222573672	4.67946172531091	4.76338975939259	4.41971121978434	4.61108130911077	4.71260109950949	4.16801804256123	-0.244676815541473	0.516365215470198	0.947641799425091
Merged-chr19-14650934-3	chr19	14650835	14651035	+	836.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Charlie1b|DNA|hAT-Charlie	-52752.0	NM_001302947	21888.0	Mm.103638	NM_011600	ENSMUSG00000024642	Tle4	5730411M05Rik|AA792082|Bce-1|Bce1|ESTM13|ESTM14|Grg4|X83332|X83333|grg-4	transducin-like enhancer of split 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-114805338-4	chr9	114805216	114805416	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027294, intron 1 of 3)	intron (NM_027294, intron 1 of 3)	-23323.0	NM_001252479	102545.0	Mm.35600	NM_133978	ENSMUSG00000032436	Cmtm7	AI481279|Cklfsf7|LNV	CKLF-like MARVEL transmembrane domain containing 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-22411355-4	chr8	22411256	22411456	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020560)	promoter-TSS (NM_020560)	16.0	NM_020560	57312.0	Mm.289402	NM_020560	ENSMUSG00000031533	Mrps31	1500002D03Rik|AA960481|Imogen38|Imogen44	mitochondrial ribosomal protein S31	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-105421462-2	chr11	105421362	105421562	+	763.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039242, intron 4 of 5)	L2|LINE|L2	35273.0	NM_172568	632687.0	Mm.121570	NM_172568	ENSMUSG00000078627	March10	4933417C16Rik|AV039223|Rnf190	membrane-associated ring finger (C3HC4) 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-69105551-2	chr17	69105451	69105651	+	678.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355732, intron 1 of 21)	intron (NM_001355732, intron 1 of 21)	29874.0	NM_001355732	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-99929890-4	chr4	99929775	99929975	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028132, intron 1 of 10)	CpG	424.0	NM_028132	72157.0	Mm.217764	NM_028132	ENSMUSG00000025791	Pgm2	2610020G18Rik|AA407108|AI098105|Pgm-2|Pgm1	phosphoglucomutase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-60600525-2	chr9	60600425	60600625	+	680.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001311095, intron 13 of 15)	intron (NM_001311095, intron 13 of 15)	-54643.0	NR_040463	100504561.0	Mm.410770	NR_040463	ENSMUSG00000111761	9230112J17Rik	-	RIKEN cDNA 9230112J17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-98957386-4	chr15	98957292	98957492	+	913.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3891.0	NM_011653	22142.0	Mm.405359	NM_011653	ENSMUSG00000072235	Tuba1a	Tuba-1|Tuba1	tubulin, alpha 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-19904180-4	chr14	19904097	19904297	+	922.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285910, intron 1 of 2)	intron (NM_001285910, intron 1 of 2)	65272.0	NR_105025	52512.0	Mm.483998	NR_105025	ENSMUSG00000114350	D14Ertd670e	-	DNA segment, Chr 14, ERATO Doi 670, expressed	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-115321546-4	chr6	115321431	115321631	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB3|LINE|L1	-39420.0	NM_001127330	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-123333303-4	chr3	123333196	123333396	+	980.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027135, intron 10 of 22)	intron (NM_027135, intron 10 of 22)	52694.0	NM_201638	210529.0	Mm.260039	NM_201638	ENSMUSG00000028114	Mettl14	G430022H21Rik|mKIAA1627	methyltransferase like 14	protein-coding	5.38669679949964	5.35649468769098	5.43818855295738	5.8007799066957	4.51198716482285	4.49362581387806	3.90486170719026	4.21255246104965	-1.442132810783	1.28699584372313e-05	0.000569092486473835
Merged-chr7-16928487-4	chr7	16928383	16928583	+	904.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-4451.0	NM_007590	12315.0	Mm.288630	NM_007590	ENSMUSG00000019370	Calm3	CaMA|Cam3|Camc|R75142	calmodulin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24739522-2	chr17	24739407	24739607	+	946.416626	f1_balb.idr|f1_c57bl6.idr	exon (NM_001346668, exon 2 of 4)	exon (NM_001346668, exon 2 of 4)	2914.0	NM_001346668	27361.0	Mm.28212	NM_013759	ENSMUSG00000075705	Msrb1	D17Wsu82e|SELX|SelR|Sepr|Sepx1	methionine sulfoxide reductase B1	protein-coding	2.91952955344831	2.39091628551581	2.30362724647425	2.90495060983494	2.32853566793698	1.23860602472504	1.20298198023205	1.17104027772391	-2.50623460562338	0.0170287251252459	0.159276273083049
Merged-chr4-40174459-4	chr4	40174368	40174568	+	988.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007386, intron 4 of 20)	intron (NM_007386, intron 4 of 20)	31203.0	NM_007386	11428.0	Mm.331547	NM_007386	ENSMUSG00000028405	Aco1	Aco-1|Irebp|Irp1	aconitase 1	protein-coding	1.50062918683116	2.33405061310249	1.805741072011	2.30590067081715	2.47607872972387	2.7755332495193	1.99181088473692	2.42058886392016	0.986764292384382	0.264979480427775	0.767681215270231
Merged-chr7-115084887-4	chr7	115084774	115084974	+	995.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	133600.0	NR_040319	101786.0	Mm.395157	NR_040317	ENSMUSG00000108379	A730082K24Rik	AU044236	RIKEN cDNA A730082K24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-93243281-4	chr13	93243190	93243390	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-50873.0	NM_001361537	100715.0	Mm.242865	NM_133905	ENSMUSG00000042167	Papd4	8030446C20Rik|AI649009|GLD-2|Gld2	PAP associated domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-73061883-2	chr15	73061783	73061983	+	738.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_180662)	promoter-TSS (NM_180662)	-679.0	NM_001164643	76510.0	Mm.158902	NM_029640	ENSMUSG00000047921	Trappc9	1810044A24Rik|2900005P22Rik|4632408O18Rik|Ibp|Nibp|TRS130|mKIAA1882	trafficking protein particle complex 9	protein-coding	-0.0723895071073691	-0.0171633318582174	-0.18462873084159	0.0704824370242265	0.0384442776868722	-0.180629083187418	0.209966693938135	-0.186682765369638	0.334672966022598	0.876123495448993	1
Merged-chr14-26636485-2	chr14	26636385	26636585	+	856.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-1649.0	NM_007479	11843.0	Mm.297768	NM_007479	ENSMUSG00000021877	Arf4	AA407803	ADP-ribosylation factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97276925-1	chr6	97276825	97277025	+	764.0	f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-24145.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	2.13017719206742	0.942050266245983	0.921249905267203	2.02979150334751	1.08694019999972	0.946648903790303	1.80635966784202	2.04175843031946	-0.240708134075687	0.857465977936992	0.998431161219273
Merged-chr2-102914338-3	chr2	102914279	102914479	+	862.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12714.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	-0.501796035533201	0.139110117102942	-0.493390582842328	0.0495687538010091	-0.501015189212223	-0.488377657939509	-0.492488009595812	-0.495997082908245	-3.51862483220824	0.19146640807655	1
Merged-chr2-30707495-4	chr2	30707396	30707596	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13714.0	NR_037272	100526499.0		NR_037272	ENSMUSG00000093091	Mir3089	mir-3089|mmu-mir-3089	microRNA 3089	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94372497-2	chr10	94372397	94372597	+	811.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 1 of 4)	MIRb|SINE|MIR	60548.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-20955306-3	chr5	20955222	20955422	+	572.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_030699, exon 1 of 1)	non-coding (NR_030699, exon 1 of 1)	-3500.0	NM_001080977	242860.0	Mm.254286	NM_001080977	ENSMUSG00000039968	Rsbn1l	8430412F05Rik|AI447441|C330002G24Rik	round spermatid basic protein 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-74795008-3	chr5	74794934	74795134	+	700.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-92131.0	NM_001159577	16924.0	Mm.440403	NM_010727	ENSMUSG00000029228	Lnx1	Lnx	ligand of numb-protein X 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-58422867-3	chr4	58422751	58422951	+	890.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18247.0	NR_037278	100526502.0		NR_037278	ENSMUSG00000093293	Mir3095	mir-3095|mmu-mir-3095	microRNA 3095	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-145827321-6	chr2	145827216	145827416	+	781.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028724, intron 4 of 12)	B1F|SINE|Alu	41200.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-45093023-3	chr9	45092942	45093142	+	774.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005421, intron 5 of 10)	intron (NM_001005421, intron 5 of 10)	13859.0	NM_001005421	270152.0	Mm.190461	NM_001005421	ENSMUSG00000048534	Jaml	AMICA|Amica1|Crea7|Gm638	junction adhesion molecule like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-36364523-4	chr12	36364425	36364625	+	985.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16925.0	NM_001289504	75847.0	Mm.261764	NM_178629	ENSMUSG00000043153	Ispd	4930579E17Rik|AV040780	isoprenoid synthase domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69272575-2	chr11	69272475	69272675	+	955.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35553.0	NM_008192	14919.0	Mm.291816	NM_008192	ENSMUSG00000020890	Gucy2e	GC-E|GC1|ROS-GC1	guanylate cyclase 2e	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-129397005-4	chr6	129396892	129397092	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001204239)	promoter-TSS (NM_001204239)	-305.0	NM_001204253	56760.0	Mm.30700	NM_019985	ENSMUSG00000030159	Clec1b	1810061I13Rik|Clec-2|Clec2	C-type lectin domain family 1, member b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124311696-3	chr6	124311588	124311788	+	848.788879	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_053094, exon 5 of 17)	exon (NM_053094, exon 5 of 17)	7037.0	NM_053094	93671.0	Mm.37426	NM_053094	ENSMUSG00000008845	Cd163	CD163v2|CD163v3	CD163 antigen	protein-coding	1.6628994059616	1.80382633888475	1.38052785773024	1.0270574490806	1.14437246464718	1.70907889966987	0.840683903399201	0.827398245485851	-1.15462609757386	0.386351548523685	0.876334568009738
Merged-chr3-87525587-4	chr3	87525455	87525655	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_012051)	promoter-TSS (NM_012051)	-23.0	NM_001083318	27049.0	Mm.219460	NM_012051	ENSMUSG00000003382	Etv3	AI414410|METS|Pe1	ets variant 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-89019575-3	chr11	89019487	89019687	+	788.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009546, exon 9 of 9)	3' UTR (NM_009546, exon 9 of 9)	20184.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44231150-4	chr9	44231031	44231231	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007619, intron 1 of 15)	intron (NM_007619, intron 1 of 15)	2915.0	NM_007619	12402.0	Mm.266871	NM_007619	ENSMUSG00000034342	Cbl	4732447J05Rik|Cbl-2|c-Cbl|cbl	Casitas B-lineage lymphoma	protein-coding	4.46172044151877	4.01045754085226	5.04092035975835	4.42206322649179	4.19683072483234	4.2604470910305	4.31014626036464	4.06391390592956	-0.426352105208528	0.293732072997976	0.797936457776133
Merged-chr4-155568273-4	chr4	155568161	155568361	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355599, intron 1 of 10)	B1_Mur1|SINE|Alu	4446.0	NM_001355599	192185.0	Mm.28347	NM_138671	ENSMUSG00000029063	Nadk	4432404C02Rik|BC004012	NAD kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-80892713-2	chr9	80892613	80892813	+	555.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-427275.0	NM_022016	63859.0	Mm.422780	NM_022016	ENSMUSG00000032343	Impg1	A930015H12Rik|IMP150|SPACR	interphotoreceptor matrix proteoglycan 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-28746562-2	chr10	28746462	28746662	+	590.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001305663, intron 3 of 5)	Lx3A|LINE|L1	78202.0	NM_178666	210757.0	Mm.123021	NM_178666	ENSMUSG00000049109	Themis	E430004N04Rik|Gasp|Spot|Tsepa|thylex	thymocyte selection associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-125415971-1	chr5	125415871	125416071	+	814.0	f1_c57bl6.idr	intron (NM_203319, intron 24 of 26)	intron (NM_203319, intron 24 of 26)	18077.0	NM_203319	208144.0	Mm.296385	NM_203319	ENSMUSG00000029480	Dhx37	Gm1050|Gm451|mKIAA1517	DEAH (Asp-Glu-Ala-His) box polypeptide 37	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119443600-2	chr11	119443500	119443700	+	726.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47635.0	NR_153849	78439.0	Mm.440446	NR_153849	ENSMUSG00000109408	A930037H05Rik	Gm44935	RIKEN cDNA A930037H05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-21941749-4	chr14	21941651	21941851	+	885.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	47850.0	NM_145459	218820.0	Mm.292401	NM_145459	ENSMUSG00000039081	Zfp503	AI181838|B830002A16Rik|Nolz-1|Nolz1|Znf503	zinc finger protein 503	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-117019340-4	chr2	117019222	117019422	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-101749.0	NM_001277256	114715.0	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-80087026-4	chr11	80086950	80087150	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2350.0	NM_001029856	237877.0	Mm.89551	NM_001029856	ENSMUSG00000017550	Atad5	C130052G03Rik|FRAG1|Gm17	ATPase family, AAA domain containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-53756750-2	chr11	53756650	53756850	+	746.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6904.0	NR_106131	102465772.0		NR_106131	ENSMUSG00000099153	Mir7671	Gm27802|mmu-mir-7671	microRNA 7671	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-86603342-2	chr11	86603242	86603442	+	598.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356531, intron 9 of 11)	intron (NM_001356531, intron 9 of 11)	-19184.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-186712849-2	chr1	186712749	186712949	+	855.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6860.0	NM_001329107	21808.0	Mm.18213	NM_009367	ENSMUSG00000039239	Tgfb2	BB105277|Tgf-beta2|Tgfb-2	transforming growth factor, beta 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-102403857-2	chr15	102403757	102403957	+	578.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2459.0	NM_013672	20683.0	Mm.4618	NM_013672	ENSMUSG00000001280	Sp1	1110003E12Rik|AA450830|AI845540|Sp1-1	trans-acting transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-119430518-4	chr9	119430417	119430617	+	717.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007397, intron 6 of 9)	intron (NM_007397, intron 6 of 9)	-14443.0	NR_153320	208194.0	Mm.101578	NM_172456	ENSMUSG00000042787	Exog	AW557704|ENGL-B|ENGL-a|Endogl1|Endogl2|Engl|Engla|Englb	endo/exonuclease (5'-3'), endonuclease G-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-67500743-3	chr18	67500647	67500847	+	701.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176832, intron 9 of 13)	intron (NM_176832, intron 9 of 13)	35898.0	NM_144867	225655.0	Mm.221420	NM_144867	ENSMUSG00000024530	Prelid3a	A230074A19Rik|BC019561|Slmo1	PRELI domain containing 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28709204-4	chr17	28709098	28709298	+	946.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168514, intron 2 of 12)	intron (NM_001168514, intron 2 of 12)	16630.0	NM_001357724	26416.0	Mm.311337	NM_011951	ENSMUSG00000053436	Mapk14	CSBP2|Crk1|Csbp1|Mxi2|PRKM14|PRKM15|p38|p38-alpha|p38MAPK|p38a|p38alpha	mitogen-activated protein kinase 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-143600156-4	chr7	143600060	143600260	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013742)	promoter-TSS (NM_013742)	-70.0	NM_013742	27267.0	Mm.125659	NM_013742	ENSMUSG00000010755	Cars	CA3	cysteinyl-tRNA synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-172612976-2	chr1	172612876	172613076	+	667.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10425.0	NM_001164725	677296.0	Mm.439612	NM_001164725	ENSMUSG00000070504	Fcrl6	FcRH6|mIFGP6|moFcRH6	Fc receptor-like 6	protein-coding	0.0286174928246621	-0.218377765697717	-0.222816504438828	-0.226235582701775	0.239967287516646	0.394129459566954	-0.221838208867029	-0.225638621613201	2.1526850104632	0.377234435031197	1
Merged-chr15-38635233-1	chr15	38635133	38635333	+	604.0	f0_balb.idr	Intergenic	Intergenic	-26671.0	NM_025494	66335.0	Mm.276618	NM_025494	ENSMUSG00000022295	Atp6v1c1	1700025B18Rik|U13839	ATPase, H+ transporting, lysosomal V1 subunit C1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-17727013-2	chr18	17726913	17727113	+	651.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	-146023.0	NR_045374	75162.0	Mm.60874	NR_045374		4930545E07Rik	-	RIKEN cDNA 4930545E07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-8122138-3	chr10	8122044	8122244	+	998.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-166021.0	NM_138667	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	0.105880596998112	0.127718775603724	0.120616614783927	0.884283596420295	0.107258179148777	0.517646422850341	0.122187252366517	0.893294060188187	0.523046801788617	0.805984924344141	1
Merged-chr7-102025447-4	chr7	102025343	102025543	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029211, intron 6 of 8)	intron (NM_029211, intron 6 of 8)	-7288.0	NM_010531	16068.0	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-108902137-2	chr3	108902037	108902237	+	641.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001356292)	TTS (NM_001356292)	9592.0	NM_025845	66921.0	Mm.51049	NM_025845	ENSMUSG00000027881	Prpf38b	1110021E09Rik|AU018955	PRP38 pre-mRNA processing factor 38 (yeast) domain containing B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-20220593-4	chr13	20220489	20220689	+	644.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 4 of 21)	intron (NM_080288, intron 4 of 21)	130082.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	3.21199180036633	2.09777591991872	1.87156304024457	2.09480310321789	1.73821067980389	1.54201223585373	1.88654082109594	1.82742513866668	-1.73327421231147	0.0665566674917341	0.386885656023691
Merged-chr1-106321610-4	chr1	106321511	106321711	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133821, intron 4 of 16)	intron (NM_133821, intron 4 of 16)	149742.0	NM_133821	98432.0	Mm.24115	NM_133821	ENSMUSG00000044340	Phlpp1	AI836256|Phlpp|Plekhe1|SCOP|mKIAA0606	PH domain and leucine rich repeat protein phosphatase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-17651841-2	chr16	17651741	17651941	+	572.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_033609, exon 18 of 18)	3' UTR (NM_033609, exon 18 of 18)	5371.0	NM_001166164	72315.0	Mm.297777	NM_001166164	ENSMUSG00000041617	Ccdc74a	2310015A05Rik	coiled-coil domain containing 74A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180778329-4	chr1	180778239	180778439	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	35266.0	NM_008210	15078.0	Mm.138832	NM_008210	ENSMUSG00000060743	H3f3a	EyeLinc14|H3.3A	H3 histone, family 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-50092562-2	chr17	50092462	50092662	+	828.700012	f1_balb.idr|f1_c57bl6.idr	intron (NM_181397, intron 3 of 9)	intron (NM_181397, intron 3 of 9)	97935.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-116311565-2	chr6	116311465	116311665	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290338, intron 5 of 8)	ORR1C1|LTR|ERVL-MaLR	-26457.0	NM_027920	71779.0	Mm.27064	NM_027920	ENSMUSG00000025702	March8	1300017E09Rik|MARCH-VIII|Mir	membrane-associated ring finger (C3HC4) 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-21531819-2	chr18	21531719	21531919	+	618.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	-119746.0	NM_001271580	74644.0	Mm.329311	NM_001271580		4930426D05Rik	-	RIKEN cDNA 4930426D05 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-109165722-2	chr4	109165622	109165822	+	584.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346502, intron 2 of 23)	intron (NM_001346502, intron 2 of 23)	-27809.0	NM_001355190	100273.0	Mm.366315	NM_133885	ENSMUSG00000028559	Osbpl9	2600011I06Rik|AU015843|Orp-9	oxysterol binding protein-like 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-61766952-2	chr14	61766833	61767033	+	583.0	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	-84560.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	0.233311687338402	1.3616436717069	0.257222957747144	0.24836692648065	0.588298311684218	0.270985221116337	0.259726826644995	1.40358124451418	0.353108836556052	0.854755399753455	0.998431161219273
Merged-chr2-152397105-7	chr2	152396960	152397160	+	784.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011438, exon 1 of 1)	exon (NM_011438, exon 1 of 1)	986.0	NM_011438	20667.0	Mm.28424	NM_011438	ENSMUSG00000051817	Sox12	2010205A02Rik	SRY (sex determining region Y)-box 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89858347-4	chr3	89858248	89858448	+	969.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172530, exon 6 of 6)	3' UTR (NM_172530, exon 6 of 6)	26978.0	NM_172530	214547.0	Mm.225	NM_172530	ENSMUSG00000046280	She	9430022A14	src homology 2 domain-containing transforming protein E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-46503840-2	chr4	46503740	46503940	+	644.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_053179)	TTS (NM_053179)	14511.0	NM_053179	94181.0	Mm.249349	NM_053179	ENSMUSG00000028334	Nans	4632418E04Rik|BB056474|Sas	N-acetylneuraminic acid synthase (sialic acid synthase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-34485952-4	chr1	34485778	34485978	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12534.0	NM_009355	21755.0	Mm.10725	NM_009355	ENSMUSG00000026125	Prss39	Tesp1	protease, serine 39	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-132240653-2	chr2	132240553	132240753	+	662.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027478, intron 3 of 3)	intron (NM_027478, intron 3 of 3)	7135.0	NM_027478	70612.0	Mm.30116	NM_027478	ENSMUSG00000027341	Tmem230	5730494N06Rik|AA407821	transmembrane protein 230	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-109261993-4	chr13	109261904	109262104	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011056, intron 3 of 16)	intron (NM_011056, intron 3 of 16)	-62740.0	NR_030644	100124489.0		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-28681792-3	chr2	28681673	28681873	+	813.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289575, intron 19 of 22)	intron (NM_001289575, intron 19 of 22)	17878.0	NM_027283	69987.0	Mm.239376	NM_027283	ENSMUSG00000026809	Spaca9	1700026L06Rik|MAST	sperm acrosome associated 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-25781529-2	chr8	25781429	25781629	+	697.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_026121, intron 1 of 4)	B3|SINE|B2	3680.0	NM_026121	67384.0	Mm.118400	NM_026121	ENSMUSG00000037316	Bag4	2410112I15Rik|SODD	BCL2-associated athanogene 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-17065101-3	chr6	17065030	17065230	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207176)	promoter-TSS (NM_207176)	-19.0	NM_207176	21753.0	Mm.436548	NM_011570	ENSMUSG00000029552	Tes	D6Ertd352e|TESS|Tes1|Tes2|testin2	testis derived transcript	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-154939128-4	chr4	154938973	154939173	+	737.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10996.0	NM_178931	230979.0	Mm.215147	NM_178931	ENSMUSG00000042333	Tnfrsf14	Atar|HveA|Hvem|Tnfrs14	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	protein-coding	1.63489235325178	1.16002461744094	1.87768786932577	0.913810875547411	1.45713756471551	1.50822414020049	1.4566118974377	1.10930375387084	-0.267047050724104	0.829591320416523	0.998431161219273
Merged-chr12-28727284-4	chr12	28727202	28727402	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161410, intron 3 of 11)	intron (NM_001161410, intron 3 of 11)	23092.0	NM_001161410	217449.0	Mm.132006	NM_178811	ENSMUSG00000020628	Trappc12	CGI-87|D930014A20Rik|Ttc15	trafficking protein particle complex 12	protein-coding	-0.308464760466365	-0.292357515793702	0.513876610851746	-0.301675048526232	-0.307451817918877	-0.291177814258474	0.322608573800776	-0.300963187322324	-0.547982556169849	0.831438725925057	1
Merged-chr10-88684710-2	chr10	88684610	88684810	+	773.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1687.0	NM_011461	20728.0	Mm.21642	NM_011461	ENSMUSG00000004359	Spic	AU019198|C76795|Prf|Spi-C	Spi-C transcription factor (Spi-1/PU.1 related)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-58823629-4	chr15	58823534	58823734	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175212)	promoter-TSS (NM_175212)	-207.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115992411-2	chr11	115992311	115992511	+	548.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001005608, intron 23 of 39)	MIRb|SINE|MIR	1304.0	NR_152190	100038636.0	Mm.450138	NR_152190		B230344G16Rik	-	RIKEN cDNA B230344G16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-72664827-4	chr12	72664727	72664927	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025522)	promoter-TSS (NM_025522)	1.0	NM_025522	66375.0	Mm.289653	NM_025522	ENSMUSG00000021094	Dhrs7	2310016E22Rik|5730564L20Rik|AW061210|Retdsr4|Retsdr4	dehydrogenase/reductase (SDR family) member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-120815830-4	chr4	120815753	120815953	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357192)	promoter-TSS (NM_001357192)	-140.0	NM_001357192	18046.0	Mm.318389	NM_008692	ENSMUSG00000032897	Nfyc	-	nuclear transcription factor-Y gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75999998-2	chr11	75999898	76000098	+	559.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198637)	promoter-TSS (NM_198637)	86.0	NM_198637	74230.0	Mm.271247	NM_198637	ENSMUSG00000053783	1700016K19Rik	Liat1	RIKEN cDNA 1700016K19 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-40694651-4	chr3	40694543	40694743	+	887.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175515, intron 13 of 15)	LTR16A|LTR|ERVL	-14228.0	NM_178386	73333.0	Mm.78691	NM_178386	ENSMUSG00000069041	Slc25a31	1700034J06Rik|Ant4|Sfec	solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 31	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-48049494-4	chr19	48049381	48049581	+	992.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	111769.0	NM_001163267	381229.0	Mm.300553	NM_001163267	ENSMUSG00000046585	Cfap58	Ccdc147|Gm969	cilia and flagella associated protein 58	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-36521969-4	chr12	36521865	36522065	+	884.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001289502, exon 7 of 9)	exon (NM_001289502, exon 7 of 9)	106349.0	NR_037309	100499526.0		NR_037309	ENSMUSG00000092917	Mir3472	mmu-mir-3472	microRNA 3472	ncRNA	3.13724864047075	3.03710607487588	3.23199678315674	3.73845089685123	3.23404033934159	3.36675003539892	1.96508023976832	2.9708019079847	-0.553151873877271	0.398326312995183	0.884476083278755
Merged-chr6-72512656-4	chr6	72512596	72512796	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31695.0	NM_007599	12332.0	Mm.18626	NM_007599	ENSMUSG00000056737	Capg	gCap39|mbh1	capping protein (actin filament), gelsolin-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-91719279-4	chr12	91719188	91719388	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 3 of 6)	MTD|LTR|ERVL-MaLR	67148.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-106815033-2	chr1	106814937	106815137	+	803.166626	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-18312.0	NM_009190	20479.0	Mm.18705	NM_009190	ENSMUSG00000009907	Vps4b	8030489C12Rik|Skd1	vacuolar protein sorting 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-155201726-2	chr4	155201626	155201826	+	986.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011385, intron 1 of 6)	intron (NM_011385, intron 1 of 6)	20809.0	NM_011385	20481.0	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-109340028-3	chr3	109339918	109340118	+	854.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020505)	promoter-TSS (NM_020505)	-665.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	0.867479869831127	0.960629110455478	1.68878877451102	1.63025655979179	1.15179089719761	1.31359591626785	0.724755297520218	0.71332148673732	-1.39950433646742	0.324508010207426	0.827219640184567
Merged-chr11-106709436-2	chr11	106709336	106709536	+	946.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001305158, intron 2 of 14)	intron (NM_001305158, intron 2 of 14)	5845.0	NM_001305158	18613.0	Mm.343951	NM_008816	ENSMUSG00000020717	Pecam1	C85791|Cd31|PECAM-1|Pecam	platelet/endothelial cell adhesion molecule 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-121171690-4	chr3	121171580	121171780	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025637)	promoter-TSS (NM_025637)	15.0	NM_028456	66568.0	Mm.263163	NM_025637	ENSMUSG00000028133	Rwdd3	2510027J23Rik|3110037C01Rik|AI035684|AI662458|Rsume|X2CR1	RWD domain containing 3	protein-coding	6.41943446188304	6.23568095904253	5.81114891389748	5.60251797747199	6.00399872221684	5.75252545949877	5.94015894805215	6.23836782423079	-0.0657067647515539	0.795139690068854	0.998431161219273
Merged-chr11-24185135-4	chr11	24185041	24185241	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	104446.0	NM_001159290	14025.0	Mm.53687	NM_016707	ENSMUSG00000000861	Bcl11a	2810047E18Rik|BCL-11A|Ctip1|D930021L15Rik|Evi9|Evi9a|Evi9b|Evi9c|mKIAA1809	B cell CLL/lymphoma 11A (zinc finger protein)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-75874716-4	chr16	75874620	75874820	+	901.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023380, intron 5 of 7)	intron (NM_023380, intron 5 of 7)	34546.0	NM_023380	67742.0	Mm.131406	NM_023380	ENSMUSG00000022876	Samsn1	4930571B16Rik|930571B16Rik|Hacs1|SLy2	SAM domain, SH3 domain and nuclear localization signals, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-105253802-4	chr4	105253716	105253916	+	946.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	96469.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-105474545-3	chr11	105474459	105474659	+	873.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17824.0	NM_001039242	632687.0	Mm.121570	NM_172568	ENSMUSG00000078627	March10	4933417C16Rik|AV039223|Rnf190	membrane-associated ring finger (C3HC4) 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-92439937-2	chr16	92439837	92440037	+	710.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081549, intron 1 of 3)	intron (NM_001081549, intron 1 of 3)	26232.0	NM_001081549	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-16896643-4	chr6	16896552	16896752	+	965.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031198, intron 1 of 6)	Lx3C|LINE|L1	1789.0	NM_031198	21426.0	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19354451-1	chr7	19354351	19354551	+	544.0	f1_balb.idr	exon (NM_001127324, exon 7 of 7)	exon (NM_001127324, exon 7 of 7)	5032.0	NM_145822	70333.0	Mm.171370	NM_145822	ENSMUSG00000047649	Cd3eap	1190028F09|2610103M17Rik|ASE-1|Ase1|CAST|PAF49	CD3E antigen, epsilon polypeptide associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55233743-4	chr19	55233669	55233869	+	970.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081076, intron 3 of 20)	intron (NM_001081076, intron 3 of 20)	7467.0	NM_001081076	73707.0	Mm.489987	NM_001081076	ENSMUSG00000055523	Gucy2g	2410077I05Rik|GC-G	guanylate cyclase 2g	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-85658707-4	chr1	85658598	85658798	+	892.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013673, intron 1 of 19)	intron (NM_013673, intron 1 of 19)	8710.0	NM_001313714	20684.0	Mm.290906	NM_013673	ENSMUSG00000026222	Sp100	A430075G10Rik	nuclear antigen Sp100	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-53314318-4	chr19	53314242	53314442	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360348, intron 1 of 5)	CpG	2897.0	NM_001360348	17859.0	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-170642369-2	chr1	170642269	170642469	+	583.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2163.0	NM_177068	320078.0	Mm.287131	NM_177068	ENSMUSG00000038463	Olfml2b	1110018N05Rik|4832415H08Rik|AI467542	olfactomedin-like 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-79929071-2	chr10	79928971	79929171	+	802.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001288625, intron 1 of 8)	intron (NM_001288625, intron 1 of 8)	1730.0	NM_001288625	13496.0	Mm.301282	NM_007880	ENSMUSG00000019564	Arid3a	Bright|Dri1|Dril1	AT rich interactive domain 3A (BRIGHT-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-129879351-4	chr3	129879259	129879459	+	972.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104611, intron 1 of 4)	intron (NR_104611, intron 1 of 4)	753.0	NM_023196	66350.0	Mm.151951	NM_023196	ENSMUSG00000027999	Pla2g12a	2310004B05Rik|GXII|GXII-1|GXII-1-PLA2|Pla2g12|Rossy|mGXII-1	phospholipase A2, group XIIA	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-163472642-4	chr2	163472537	163472737	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028122)	promoter-TSS (NR_028122)	-8.0	NM_173397	228859.0	Mm.242917	NM_173397	ENSMUSG00000048486	Fitm2	AI414861|D930001I22Rik|Fit2	fat storage-inducing transmembrane protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-143710596-4	chr1	143710501	143710701	+	974.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11A|LTR|ERVK	-7708.0	NM_145991	214498.0	Mm.156727	NM_145991	ENSMUSG00000026361	Cdc73	8430414L16Rik|C130030P16Rik|C81219|Hrpt2	cell division cycle 73, Paf1/RNA polymerase II complex component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-138083302-4	chr4	138083196	138083396	+	974.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355700, intron 2 of 30)	intron (NM_001355700, intron 2 of 30)	55222.0	NR_126429	73563.0	Mm.444294	NR_126429	ENSMUSG00000084804	1700095J12Rik	-	RIKEN cDNA 1700095J12 gene	ncRNA	4.59168671854083	4.36958119684568	4.8919172673471	4.50781520053147	3.38879346728048	3.72492314775413	4.31861402668417	3.38112736099522	-1.13206526035972	0.00957006157318402	0.105858880229006
Merged-chr15-93251955-6	chr15	93251819	93252019	+	842.7222289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033275, intron 4 of 7)	intron (NM_001033275, intron 4 of 7)	23260.0	NM_001357006	223827.0	Mm.22819	NM_001033275	ENSMUSG00000036197	Gxylt1	Glt8d3|Gm1228|Gm87	glucoside xylosyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-8683248-4	chr19	8683165	8683365	+	897.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001112697, exon 3 of 3)	3' UTR (NM_001112697, exon 3 of 3)	19260.0	NM_001112697	12669.0	Mm.240607	NM_007698	ENSMUSG00000032773	Chrm1	Chrm-1|M1|M1R	cholinergic receptor, muscarinic 1, CNS	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-52366160-2	chr11	52366060	52366260	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011694, intron 1 of 8)	intron (NM_011694, intron 1 of 8)	5298.0	NM_011694	22333.0	Mm.3555	NM_011694	ENSMUSG00000020402	Vdac1	AL033343|Vdac5|mVDAC1|mVDAC5	voltage-dependent anion channel 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-63758168-4	chr9	63758071	63758271	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016769)	promoter-TSS (NM_016769)	-177.0	NM_016769	17127.0	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-105654832-4	chr5	105654714	105654914	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45155.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	4.55403206812989	5.46779133018712	6.02026331563354	4.16297771930191	4.91836824496296	5.62238404217354	4.98953863838067	5.62635387736941	0.103327852118072	0.795832475266518	0.998431161219273
Merged-chr2-164162976-2	chr2	164162876	164163076	+	581.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_008435)	TTS (NM_008435)	8137.0	NM_008435	16538.0	Mm.6217	NM_008435	ENSMUSG00000040164	Kcns1	Kv9.1	K+ voltage-gated channel, subfamily S, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-47371866-4	chr14	47371777	47371977	+	898.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1983.0	NM_010705	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	3.73155434694899	3.48842618748078	3.00930335611016	2.2455513485485	2.88497414349471	3.59144278340308	1.61180834338995	3.50633665252629	-0.22081512111028	0.769072828278183	0.998431161219273
Merged-chr7-19001266-4	chr7	19001158	19001358	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_145579, exon 3 of 3)	3' UTR (NM_145579, exon 3 of 3)	-2807.0	NM_178757	272359.0	Mm.274237	NM_178757	ENSMUSG00000044030	Irf2bp1	6330414O09Rik|C530033F24	interferon regulatory factor 2 binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-88237534-3	chr8	88237434	88237634	+	775.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164499, intron 2 of 11)	(TTTTTG)n|Simple_repeat|Simple_repeat	-34869.0	NM_007406	11513.0	Mm.288206	NM_007406	ENSMUSG00000031659	Adcy7	AA407758	adenylate cyclase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5939451-2	chr17	5939351	5939551	+	860.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1829.0	NM_001113353	20975.0	Mm.236068	NM_011523	ENSMUSG00000023805	Synj2	AI481647|SJ2|mKIAA0348	synaptojanin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-53746828-3	chr18	53746728	53746928	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2281.0	NM_178686	225523.0	Mm.193678	NM_178686	ENSMUSG00000048799	Cep120	A230075C01|AU016693|Ccdc100	centrosomal protein 120	protein-coding	3.44809393682704	2.7393028013254	3.93689489363076	3.2574997616083	5.37227583000586	5.47528110134349	5.32229522556005	5.34202012286523	2.47923620943167	3.69652685668088e-10	6.85839111749338e-08
Merged-chr5-105139204-2	chr5	105139125	105139325	+	797.299988	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359079, intron 1 of 11)	intron (NM_001359079, intron 1 of 11)	361.0	NM_001256005	17472.0	Mm.440525	NM_008620	ENSMUSG00000079363	Gbp4	AW228052|Mag-2|Mpa-2|Mpa2	guanylate binding protein 4	protein-coding	-0.193935827275163	-0.429502169658866	-0.432900555725786	-0.0402339387412772	0.00744655371966341	-0.428733347065729	-0.432152748142568	-0.435053950015787	-0.414898773290326	0.872928978118377	1
Merged-chr14-44847950-2	chr14	44847850	44848050	+	651.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11425.0	NM_008962	19214.0	Mm.5105	NM_008962	ENSMUSG00000071489	Ptgdr	DP|PGD	prostaglandin D receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-99587831-2	chr9	99587738	99587938	+	747.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12039.0	NM_031403	83703.0	Mm.31324	NM_031403	ENSMUSG00000032469	Dbr1	AW018415	debranching RNA lariats 1	protein-coding	-0.168368859471238	-0.154374578973722	-0.158968596377536	0.357102671635144	-0.167497749711898	0.198745073602745	-0.157956138386624	0.363870202639832	0.717267335423633	0.763468835960917	1
Merged-chr8-34965761-4	chr8	34965658	34965858	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175091)	promoter-TSS (NM_175091)	-68.0	NM_175091	21951.0	Mm.88364	NM_175091	ENSMUSG00000031529	Tnks	4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-130782129-2	chr4	130782029	130782229	+	676.166626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001159604)	TTS (NM_001159604)	-10408.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55107151-2	chr14	55107051	55107251	+	826.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001303502)	promoter-TSS (NM_001303502)	-558.0	NM_007455	11766.0	Mm.238879	NM_007455	ENSMUSG00000040701	Ap1g2	Adtg2|G2ad	adaptor protein complex AP-1, gamma 2 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-123366157-6	chr7	123365988	123366188	+	864.0639039999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316713, intron 1 of 19)	intron (NM_001316713, intron 1 of 19)	3827.0	NM_001122643	70497.0	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-122858321-2	chr6	122858221	122858421	+	641.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CATA)n|Simple_repeat|Simple_repeat	-2164.0	NM_009779	12267.0	Mm.2408	NM_009779	ENSMUSG00000040552	C3ar1	AZ3B|C3AR|HNFAG09	complement component 3a receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85169591-4	chr12	85169432	85169632	+	916.520874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001271705, exon 5 of 7)	exon (NM_001271705, exon 5 of 7)	6450.0	NM_001271705	18654.0	Mm.4809	NM_008827	ENSMUSG00000004791	Pgf	AI854365|PIGF|Plgf	placental growth factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-41004259-2	chr8	41004159	41004359	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001005863, intron 7 of 13)	intron (NM_001005863, intron 7 of 13)	-13209.0	NR_015457	78849.0	Mm.440930	NR_015457	ENSMUSG00000084960	B430010I23Rik	-	RIKEN cDNA B430010I23 gene	ncRNA	3.38659278656628	1.80623447231845	2.8258070890214	3.28619627800527	2.71308968210739	2.05870201303863	3.11979736946491	1.70443036890656	-0.819329127505788	0.320959221215894	0.823346905075712
Merged-chr2-130448661-2	chr2	130448561	130448761	+	761.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1617.0	NM_008980	19262.0	Mm.224246	NM_008980	ENSMUSG00000027303	Ptpra	Ptpa|Ptpalpha|Rptpalpha|Rptra|Rptralpha	protein tyrosine phosphatase, receptor type, A	protein-coding	1.48226987687822	1.67159859445123	1.33527716543276	1.30081988793303	1.10082185893592	2.01314956542776	1.16927134928789	1.44864114131146	0.138479453973343	0.905354881670839	0.998431161219273
Merged-chr8-13679369-2	chr8	13679269	13679469	+	553.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1782.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180983233-4	chr1	180983137	180983337	+	982.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR22_Mus|LTR|ERVK	34332.0	NM_001312918	13849.0	Mm.9075	NM_010145	ENSMUSG00000038776	Ephx1	EH|Eph-1|Eph1|Epxh1|mEH	epoxide hydrolase 1, microsomal	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-9965799-4	chr2	9965704	9965904	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027748, intron 2 of 6)	ORR1A2|LTR|ERVL-MaLR	59655.0	NR_152218	100126244.0	Mm.86343	NR_152218		Gm13262	-	predicted gene 13262	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-34389768-4	chr1	34389674	34389874	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43425.0	NR_039562	100628580.0		NR_039562	ENSMUSG00000092852	Mir5103	mir-5103|mmu-mir-5103|mu-mir-5103	microRNA 5103	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-94365719-4	chr8	94365595	94365795	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019415, intron 24 of 24)	intron (NM_019415, intron 24 of 24)	-20734.0	NM_001357205	64209.0	Mm.29151	NM_022331	ENSMUSG00000031770	Herpud1	Herp|Mifl|SUP	homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-131178936-13	chr2	131178814	131179014	+	879.367004	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007682, exon 1 of 1)	exon (NM_007682, exon 1 of 1)	1153.0	NM_007682	12616.0	Mm.440169	NM_007682	ENSMUSG00000068267	Cenpb	CENP-B	centromere protein B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-30407392-4	chr14	30407303	30407503	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028981, intron 1 of 46)	intron (NM_028981, intron 1 of 46)	-50633.0	NR_131095	77710.0	Mm.410773	NR_131095		4831407H17Rik	-	RIKEN cDNA 4831407H17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-80945674-2	chr18	80945574	80945774	+	792.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-11616.0	NM_015805	50771.0	Mm.247138	NM_015805	ENSMUSG00000024566	Atp9b	AA934181|Atpc2b|IIb|MMR	ATPase, class II, type 9B	protein-coding	-0.885343988398316	-0.873197811915141	-0.879568534556306	-0.464008891048743	-0.884809499207366	-0.870535133016439	-0.878945546113603	-0.458408536970068	0.0285539633070526	0.992673327504828	1
Merged-chr17-34587533-4	chr17	34587378	34587578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010929, exon 30 of 30)	exon (NM_010929, exon 30 of 30)	-2328.0	NM_134116	106512.0	Mm.26584	NM_134116	ENSMUSG00000034786	Gpsm3	AA960287|AGS4	G-protein signalling modulator 3 (AGS3-like, C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-106427375-2	chr1	106427317	106427517	+	640.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	119214.0	NR_106164	102466254.0		NR_106164	ENSMUSG00000098344	Mir3473f	Gm27846|mmu-mir-3473f	microRNA 3473f	ncRNA	1.41145610027088	1.73384866676149	1.54650706726696	0.837042923824679	1.4245241840266	2.05206684572029	0.853616553881114	0.839315619281488	-0.0395791494680526	0.977153599856886	0.998431161219273
Merged-chr9-50858150-2	chr9	50858050	50858250	+	890.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286553, intron 2 of 16)	B3|SINE|B2	1226.0	NM_001286553	73699.0	Mm.7726	NM_028614	ENSMUSG00000032058	Ppp2r1b	2410091N08Rik|AI790395	protein phosphatase 2, regulatory subunit A, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-63553942-4	chr4	63553845	63554045	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4818.0	NM_001356355	230279.0	Mm.41523	NM_144905	ENSMUSG00000045917	Tmem268	6330416G13Rik|AW492431|bM230C2.2	transmembrane protein 268	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119037696-2	chr11	119037596	119037796	+	846.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_013926)	TTS (NM_013926)	3217.0	NM_013926	30951.0	Mm.99953	NM_013926	ENSMUSG00000025578	Cbx8	Pc3	chromobox 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-11399800-4	chr15	11399700	11399900	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033074)	promoter-TSS (NM_033074)	-142.0	NM_033074	110960.0	Mm.286061	NM_033074	ENSMUSG00000022241	Tars	D15Wsu59e|ThrRS	threonyl-tRNA synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-44393583-4	chr18	44393443	44393643	+	901.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027490, intron 1 of 10)	intron (NM_027490, intron 1 of 10)	13043.0	NM_027490	70640.0	Mm.87629	NM_027490	ENSMUSG00000024472	Dcp2	2410015D23Rik|5730537H01Rik|AL118268	decapping mRNA 2	protein-coding	2.51609383185337	2.70047389015108	3.31534095778141	3.29634873917835	2.53804785921126	1.95250105201446	3.17675761157819	3.72444134899491	0.0365970319509118	0.959944445144679	0.998431161219273
Merged-chr2-18800115-2	chr2	18800015	18800215	+	834.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_131254, exon 1 of 1)	non-coding (NR_131254, exon 1 of 1)	1703.0	NR_131254	66774.0	Mm.87075	NR_131254	ENSMUSG00000097638	Carlr	4933439G12Rik|Carl	cardiac and apoptosis-related long non-coding RNA	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-27598796-2	chr3	27598696	27598896	+	878.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356953, intron 4 of 26)	(T)n|Simple_repeat|Simple_repeat	-13801.0	NR_037275	100526525.0		NR_037275	ENSMUSG00000092695	Mir3092	mir-3092|mmu-mir-3092	microRNA 3092	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-50661673-4	chr9	50661564	50661764	+	970.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1884.0	NM_145614	235339.0	Mm.285076	NM_145614	ENSMUSG00000000168	Dlat	6332404G05Rik|DLTA|PDC-E2	dihydrolipoamide S-acetyltransferase (E2 component of pyruvate dehydrogenase complex)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133813571-5	chr4	133813448	133813648	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-59937.0	NM_001080819	93760.0	Mm.22478	NM_001080819	ENSMUSG00000007880	Arid1a	1110030E03Rik|BAF250a|Osa1|Smarcf1	AT rich interactive domain 1A (SWI-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-69177264-4	chr17	69177143	69177343	+	974.991699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355736, intron 1 of 21)	intron (NM_001355736, intron 1 of 21)	17887.0	NM_001355735	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-45119283-2	chr17	45119183	45119383	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001357320)	TTS (NM_001357320)	-238398.0	NM_029257	75341.0	Mm.386821	NM_029257		4930564C03Rik	-	RIKEN cDNA 4930564C03 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-105967214-1	chr1	105967114	105967314	+	1000.0	f1_balb.idr	Intergenic	Lx9|LINE|L1	23068.0	NR_151625	635504.0	Mm.359717	NR_151625		Gm7160	EG635504	predicted gene 7160	ncRNA	2.3902042624573	2.04458332238704	2.4719795231574	1.70083475509479	3.53746121737035	3.13370780586629	3.02958451895905	2.53798923404026	1.82890334981269	0.016137191702246	0.152853178455432
Merged-chr4-8667340-4	chr4	8667255	8667455	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23051.0	NM_001277149	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-118080163-3	chr10	118080049	118080249	+	730.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B2|LTR|ERVK	-61638.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	1.24971787715217	1.11705916103263	1.36648965877139	2.16253402776377	2.51448719306352	2.76473034149162	3.1475196496615	1.05583030915372	2.36442280647619	0.0306755049092071	0.241182639515509
Merged-chr5-123059303-1	chr5	123059203	123059403	+	1000.0	f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-12287.0	NM_001347456	74890.0	Mm.141383	NM_029112	ENSMUSG00000029477	Morn3	4930438O03Rik	MORN repeat containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-4374875-2	chr9	4374775	4374975	+	681.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus4|LINE|L1	-1677.0	NM_145609	78100.0	Mm.206549	NM_145609	ENSMUSG00000041124	Msantd4	8430410K20Rik|Mysantd4	Myb/SANT-like DNA-binding domain containing 4 with coiled-coils	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-143837425-4	chr2	143837351	143837551	+	931.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291061, intron 5 of 7)	intron (NM_001291061, intron 5 of 7)	25722.0	NM_009751	12075.0	Mm.275937	NM_009751	ENSMUSG00000027420	Bfsp1	CP95	beaded filament structural protein 1, in lens-CP94	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111471336-4	chr12	111471223	111471423	+	999.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	14500.0	NM_001033248	212539.0	Mm.81916	NM_001033248	ENSMUSG00000010529	Gm266	-	predicted gene 266	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27520729-2	chr17	27520629	27520829	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-17196.0	NM_001291045	268934.0	Mm.358940	NM_001013385	ENSMUSG00000063239	Grm4	Gprc1d|mGluR4	glutamate receptor, metabotropic 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-80177407-4	chr11	80177307	80177507	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172133, intron 10 of 10)	intron (NM_172133, intron 10 of 10)	-6465.0	NM_028019	71956.0	Mm.22985	NM_028019	ENSMUSG00000020707	Rnf135	0610037N03Rik|2410006N06Rik	ring finger protein 135	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-87959283-2	chr3	87959183	87959383	+	723.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10590.0	NM_007759	12904.0	Mm.4757	NM_007759	ENSMUSG00000004885	Crabp2	AI893628|Crabp-2|CrabpII	cellular retinoic acid binding protein II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-73179317-4	chr14	73179207	73179407	+	965.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134083, intron 14 of 14)	intron (NM_134083, intron 14 of 14)	27544.0	NR_030459	751541.0		NR_030459	ENSMUSG00000076121	Mir687	Mirn687|mir-687|mmu-mir-687	microRNA 687	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-21654033-4	chr14	21653935	21654135	+	967.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017479, intron 12 of 16)	MTD|LTR|ERVL-MaLR	60541.0	NM_001013826	435391.0	Mm.295860	NM_001013826	ENSMUSG00000063821	Dupd1	EG435391	dual specificity phosphatase and pro isomerase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30781936-2	chr7	30781836	30782036	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_028618)	TTS (NM_028618)	5531.0	NM_028618	73712.0	Mm.30138	NM_028618	ENSMUSG00000060962	Dmkn	1110014F24Rik|AW561900|C130074A08|SK30|SK89|cI-36	dermokine	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-29264541-4	chr6	29264451	29264651	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7937.0	NM_001190461	69573.0	Mm.45161	NM_023516	ENSMUSG00000043421	Hilpda	2310016C08Rik|AW049004|Hig2	hypoxia inducible lipid droplet associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-94295093-3	chr13	94294988	94295188	+	785.033325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-9257.0	NM_001346609	107767.0	Mm.201455	NM_029153	ENSMUSG00000021687	Scamp1	4930505M11Rik|AI415563|AW122395	secretory carrier membrane protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-110585167-2	chr10	110585067	110585267	+	727.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	-15483.0	NR_028438	109335.0	Mm.367727	NR_028438	ENSMUSG00000112398	9230102K24Rik	-	RIKEN cDNA 9230102K24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-21441034-4	chr13	21440873	21441073	+	660.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162919)	promoter-TSS (NM_001162919)	80.0	NM_001012311	319207.0	Mm.434384	NM_001012311	ENSMUSG00000055313	Pgbd1	4921509E05Rik	piggyBac transposable element derived 1	protein-coding	-2.18292257394068	-2.15545247547656	-2.03304972317742	-2.17058342868585	-2.18099422382073	-2.1536522739386	-2.16187909550322	-2.16936197735154	-0.683654500252594	0.846597994014493	1
Merged-chr10-84801610-2	chr10	84801510	84801710	+	658.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001024918, intron 3 of 17)	intron (NM_001024918, intron 3 of 17)	-36538.0	NM_027689	71137.0	Mm.79070	NM_027689	ENSMUSG00000020037	Rfx4	4933412G19Rik|NYD-sp10	regulatory factor X, 4 (influences HLA class II expression)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71368520-4	chr8	71368363	71368563	+	816.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025917, intron 4 of 7)	intron (NM_025917, intron 4 of 7)	1246.0	NM_025917	67023.0	Mm.41890	NM_025917	ENSMUSG00000002395	Use1	2010315L10Rik|5730403H22Rik|AV002165|D12|Ed2|Q-snare|p31	unconventional SNARE in the ER 1 homolog (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-119741761-2	chr2	119741618	119741818	+	718.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146125)	promoter-TSS (NM_146125)	-619.0	NM_146125	228550.0	Mm.65337	NM_146125	ENSMUSG00000027296	Itpka	-	inositol 1,4,5-trisphosphate 3-kinase A	protein-coding	0.850374793262008	0.445770448903426	0.435531207447768	1.32919569884882	0.734187080113307	0.448059410755499	1.40243063662516	0.428936173742381	0.0108820349440497	0.995053248701052	0.998431161219273
Merged-chr3-95989107-2	chr3	95989007	95989207	+	873.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_023320, exon 6 of 6)	exon (NM_023320, exon 6 of 6)	3597.0	NR_045872	668224.0	Mm.357766	NR_045872		Gm9054	EG668224	predicted gene 9054	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-148443574-1	chr6	148443474	148443674	+	561.0	f0_balb.idr	intron (NM_198967, intron 1 of 19)	intron (NM_198967, intron 1 of 19)	778.0	NM_198967	387314.0	Mm.137858	NM_198967	ENSMUSG00000030306	Tmtc1	Arg99|BC023818	transmembrane and tetratricopeptide repeat containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90641633-4	chr2	90641557	90641757	+	997.4285890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	-35558.0	NM_021512	59015.0	Mm.24532	NM_021512	ENSMUSG00000051329	Nup160	160kDa|2810011M03Rik|AA414952|AU020188|Gtl-13|Gtl1-13|Gtl13|mKIAA0197	nucleoporin 160	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-108249720-2	chr11	108249620	108249820	+	720.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_011101, intron 2 of 16)	intron (NM_011101, intron 2 of 16)	94168.0	NM_011101	18750.0	Mm.222178	NM_011101	ENSMUSG00000050965	Prkca	AI875142|Pkca	protein kinase C, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-70767055-2	chr2	70766955	70767155	+	740.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_172664, intron 3 of 19)	B4A|SINE|B4	58425.0	NM_172664	228012.0	Mm.136511	NM_172664	ENSMUSG00000041997	Tlk1	4930545J15Rik	tousled-like kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45641614-2	chr7	45641514	45641714	+	788.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172418, intron 2 of 9)	intron (NM_172418, intron 2 of 9)	1637.0	NM_172418	74490.0	Mm.107442	NM_172418	ENSMUSG00000042918	Mamstr	2810022D01Rik|5430432N15Rik|AW743872|Mastr	MEF2 activating motif and SAP domain containing transcriptional regulator	protein-coding	-0.272611020212363	-0.255268910925458	0.6542981767114	-0.265289509273505	-0.271517667757588	-0.254002328593018	-0.259663076790457	0.325174289676135	-0.911060563175073	0.718520406708107	1
Merged-chr5-140798414-3	chr5	140798314	140798514	+	875.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010302, intron 1 of 3)	ID|SINE|ID	32017.0	NM_010302	14673.0	Mm.370185	NM_010302	ENSMUSG00000000149	Gna12	AI414047|AI504261|Galpha12	guanine nucleotide binding protein, alpha 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-44355071-4	chr11	44354992	44355192	+	821.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44971.0	NM_001303244	16160.0	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-17294364-4	chr17	17294258	17294458	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001324550)	promoter-TSS (NM_001324550)	-85.0	NM_001324550	100862203.0	Mm.484235	NM_001324550		Gm6712	EG626854	predicted gene 6712	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-164954974-2	chr2	164954874	164955074	+	848.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_013599, exon 13 of 13)	3' UTR (NM_013599, exon 13 of 13)	-5872.0	NM_001355481	57138.0	Mm.252987	NM_020333	ENSMUSG00000017740	Slc12a5	KCC2|mKIAA1176	solute carrier family 12, member 5	protein-coding	-0.550428070058364	-0.538583297576537	-0.542463925884104	-0.545457908994931	-0.060248596376744	0.0965107972872166	-0.541608027869283	-0.54493487009686	3.4886071003869	0.201492940287096	1
Merged-chr9-66978100-3	chr9	66978007	66978207	+	819.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M5|LINE|L1	-2623.0	NM_030717	80907.0	Mm.157882	NM_030717	ENSMUSG00000032370	Lactb	LACT-1|Lact1|Mrpl56	lactamase, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141767830-2	chr4	141767657	141767857	+	908.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_172338, exon 11 of 15)	exon (NM_172338, exon 11 of 15)	21082.0	NM_001081408	75986.0	Mm.30032	NM_001081408	ENSMUSG00000040706	Agmat	5033405N08Rik	agmatine ureohydrolase (agmatinase)	protein-coding	0.0792606189177357	-0.246502914243898	-0.250110270486091	-0.105776978507051	0.176826875012786	-0.245686009241937	-0.24931697936787	0.0245602403604627	0.627696200024815	0.786391465874382	1
Merged-chr14-70823284-4	chr14	70823186	70823386	+	925.883301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29647.0	NR_045939	73648.0	Mm.410851	NR_045939	ENSMUSG00000099528	2410012E07Rik	-	RIKEN cDNA 2410012E07 gene	ncRNA	4.99337594659739	2.53285947303115	3.9301906783902	4.14914635598673	5.3068254546162	3.27096486022874	5.08651923753346	5.16114526407101	0.926109034143029	0.255443428904643	0.75388904394832
Merged-chr16-23308458-2	chr16	23308358	23308558	+	868.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252506, intron 1 of 6)	intron (NM_001252506, intron 1 of 6)	17988.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-90736828-4	chr6	90736722	90736922	+	928.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356440, intron 1 of 13)	CpG	-20293.0	NM_001134383	232227.0	Mm.196943	NM_182784	ENSMUSG00000034312	Iqsec1	AW561907|BC026481|BRAG2|D6Ertd349e|cI-43	IQ motif and Sec7 domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-103474961-2	chr14	103474861	103475061	+	710.083374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38380.0	NM_022886	64929.0	Mm.244003	NM_022886	ENSMUSG00000022123	Scel	9230114I02Rik	sciellin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-37460124-2	chr9	37460024	37460224	+	922.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26949.0	NM_001164767	19649.0	Mm.212826	NM_011248	ENSMUSG00000032128	Robo3	Rbig1|Rig-1|Rig1|Robo3a|Robo3b	roundabout guidance receptor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-97747193-2	chr7	97747199	97747399	+	823.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9052.0	NM_175105	66333.0	Mm.29756	NM_175105	ENSMUSG00000042797	Aqp11	1700015P13Rik|AI648923|sjds	aquaporin 11	protein-coding	1.141886282553	1.09010880510755	2.08673436624224	1.58869977896447	1.40448622783778	0.858330405592392	0.842399406986469	1.4842372417253	-1.28786536913638	0.328123213821521	0.830597486712967
Merged-chr5-64322566-2	chr5	64322500	64322700	+	742.875	f0_balb.idr|f1_balb.idr	intron (NM_001289514, intron 13 of 18)	Lx7|LINE|L1	92243.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	0.843660191412698	1.87602586244078	0.688846659526073	0.677109373198997	1.26604934484251	1.58614574203707	0.692161641310323	1.34561971645363	0.394821446285872	0.790809546761973	0.998431161219273
Merged-chr7-109479252-3	chr7	109479152	109479352	+	760.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170913, intron 7 of 19)	intron (NM_001170913, intron 7 of 19)	14486.0	NM_001170913	330627.0	Mm.183528	NM_181853	ENSMUSG00000031026	Trim66	Kiaa0298-hp|Tif1d	tripartite motif-containing 66	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-62369340-3	chr4	62369230	62369430	+	754.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175090, intron 1 of 4)	intron (NM_175090, intron 1 of 4)	8629.0	NM_175090	20529.0	Mm.248637	NM_175090	ENSMUSG00000066150	Slc31a1	4930445G01Rik|AI787263|AU016967|Ctr1	solute carrier family 31, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-145315640-2	chr2	145315540	145315740	+	843.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_053195, intron 2 of 16)	intron (NM_053195, intron 2 of 16)	73029.0	NM_053195	94249.0	Mm.217171	NM_053195	ENSMUSG00000063873	Slc24a3	NCKX3	solute carrier family 24 (sodium/potassium/calcium exchanger), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-12216597-2	chr2	12216497	12216697	+	627.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001309, intron 13 of 29)	intron (NM_001001309, intron 13 of 29)	-84649.0	NR_040353	338535.0	Mm.483275	NR_040353	ENSMUSG00000086843	E030013I19Rik	-	RIKEN cDNA E030013I19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-47395709-2	chr4	47395609	47395809	+	642.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001312869, intron 2 of 7)	intron (NM_001312869, intron 2 of 7)	9493.0	NM_001312869	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-61639967-2	chr18	61639867	61640067	+	598.166626	f1_balb.idr|f1_c57bl6.idr	intron (NR_045420, intron 1 of 2)	intron (NR_045420, intron 1 of 2)	314.0	NR_045420	545261.0	Mm.426593	NR_045420	ENSMUSG00000098098	Bvht	Braveheart|Gm20748	braveheart long non-coding RNA	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-6740164-4	chr2	6740052	6740252	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110232, intron 3 of 15)	intron (NM_001110232, intron 3 of 15)	-18490.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70353354-4	chr8	70353243	70353443	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001122829)	promoter-TSS (NM_001122829)	-64.0	NM_001122829	19704.0	Mm.258280	NM_030680	ENSMUSG00000058301	Upf1	B430202H16Rik|NORF1|PNORF-1|Rent1|Upflp	UPF1 regulator of nonsense transcripts homolog (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91734965-4	chr16	91734861	91735061	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110276, intron 1 of 15)	Lx8|LINE|L1	5590.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-66699590-2	chr1	66699490	66699690	+	660.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_175510)	TTS (NM_175510)	-1241.0	NM_025683	66646.0	Mm.240912	NM_025683	ENSMUSG00000026005	Rpe	2810429B02Rik|5730518J08Rik	ribulose-5-phosphate-3-epimerase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-31065108-2	chr6	31065008	31065208	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2015.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-27317047-4	chr3	27316934	27317134	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009425)	promoter-TSS (NM_009425)	-43.0	NM_009425	22035.0	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-30046138-3	chr18	30046076	30046276	+	684.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-226689.0	NM_181414	225326.0	Mm.194127	NM_181414	ENSMUSG00000033628	Pik3c3	5330434F23Rik|Vps34	phosphatidylinositol 3-kinase catalytic subunit type 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-90938177-2	chr16	90938077	90938277	+	619.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001164483, exon 32 of 32)	3' UTR (NM_001164483, exon 32 of 32)	-3328.0	NM_026502	68001.0	Mm.45374	NM_026502	ENSMUSG00000022972	1110004E09Rik	-	RIKEN cDNA 1110004E09 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101335133-3	chr15	101335035	101335235	+	822.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34217.0	NR_035462	100316694.0		NR_035462	ENSMUSG00000088459	Mir1941	mmu-mir-1941	microRNA 1941	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-22693549-2	chr8	22693449	22693649	+	608.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159774, intron 4 of 21)	intron (NM_001159774, intron 4 of 21)	13034.0	NM_010546	16150.0	Mm.277886	NM_010546	ENSMUSG00000031537	Ikbkb	AI132552|IKK-2|IKK-beta|IKK2|IKK[b]|IKKbeta	inhibitor of kappaB kinase beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-63396914-3	chr4	63396828	63397028	+	915.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045514, intron 2 of 21)	intron (NM_001045514, intron 2 of 21)	1312.0	NM_001305432	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-92120515-1	chr14	92120415	92120615	+	648.0	f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	1770154.0	NM_001271800	211712.0	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding	0.570266857104142	0.612358355264688	1.69335787148953	1.63039226146074	0.759656057870116	0.856027422743049	0.601879460892514	1.24709989773153	-1.42989201678623	0.359162579386671	0.856306289008338
Merged-chr10-20919808-4	chr10	20919709	20919909	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B2|LTR|ERVK	-32738.0	NM_026203	52906.0	Mm.253280	NM_026203	ENSMUSG00000019986	Ahi1	1700015F03Rik|Ahi-1|D10Bwg0629e	Abelson helper integration site 1	protein-coding	3.83961633961789	3.67500948745947	3.30656274632798	3.01741061538328	4.21710218935968	2.06685215808782	2.75926855976056	3.228762008662	-0.257278969935773	0.701166386896139	0.998431161219273
Merged-chr2-38286113-4	chr2	38286017	38286217	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146122, intron 1 of 21)	intron (NM_146122, intron 1 of 21)	1267.0	NM_146122	227801.0	Mm.314245	NM_146122	ENSMUSG00000035392	Dennd1a	6030446I19Rik|connecdenn	DENN/MADD domain containing 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126588037-2	chr7	126587937	126588137	+	549.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_138310, exon 3 of 4)	exon (NM_138310, exon 3 of 4)	-2220.0	NM_001146311	12752.0	Mm.268930	NM_009907	ENSMUSG00000030720	Cln3	AI323623	ceroid lipofuscinosis, neuronal 3, juvenile (Batten, Spielmeyer-Vogt disease)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-57723383-4	chr9	57723291	57723491	+	686.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153799, intron 3 of 6)	intron (NM_153799, intron 3 of 6)	14822.0	NM_153799	353190.0	Mm.268104	NM_153799	ENSMUSG00000038957	Edc3	AA517853|Lsm16|Yjdc	enhancer of mRNA decapping 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166459141-4	chr2	166459045	166459245	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_015558)	TTS (NR_015558)	11694.0	NR_015558	319684.0	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-65470781-4	chr16	65470703	65470903	+	973.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-49826.0	NM_008849	18736.0	Mm.355440	NM_008849	ENSMUSG00000004842	Pou1f1	GHF-1|Hmp1|Pit-1|Pit1|Pit1-rs1|dw|dwarf	POU domain, class 1, transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-78600230-4	chr11	78600125	78600325	+	850.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008702, intron 3 of 10)	intron (NM_008702, intron 3 of 10)	-49490.0	NM_133706	69071.0	Mm.29431	NM_133706	ENSMUSG00000037278	Tmem97	1810014L12Rik|AI115531|AL022956|D11Bhm182e	transmembrane protein 97	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-61175255-4	chr11	61175154	61175354	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001004143)	promoter-TSS (NM_001004143)	-195.0	NM_001004143	216825.0	Mm.30602	NM_001004143	ENSMUSG00000042506	Usp22	AI427806	ubiquitin specific peptidase 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-91228464-2	chr13	91228364	91228564	+	568.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4477.0	NM_025770	66795.0	Mm.235385	NM_025770	ENSMUSG00000021619	Atg10	5330424L23Rik|5430428K15Rik|AI852123|APG10|Agp10|Apg10l|Apg10p|Atg10l	autophagy related 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-81200072-2	chr18	81199972	81200172	+	569.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-213494.0	NM_178280	20689.0	Mm.215917	NM_178280	ENSMUSG00000024565	Sall3	B130022O04Rik|Msal|Msal-1|Sal|Salt|Spalt	spalt like transcription factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-149959954-4	chr1	149959882	149960082	+	898.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008869, intron 1 of 17)	intron (NM_008869, intron 1 of 17)	1308.0	NM_008869	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-19934250-2	chr10	19934150	19934350	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008580)	promoter-TSS (NM_008580)	-276.0	NM_008580	26408.0	Mm.6595	NM_008580	ENSMUSG00000071369	Map3k5	7420452D20Rik|ASK|ASK1|MAPKKK5|Mekk5	mitogen-activated protein kinase kinase kinase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-91789480-3	chr12	91789377	91789577	+	904.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3041.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-12132900-4	chr18	12132761	12132961	+	951.716675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024182, intron 1 of 12)	intron (NM_024182, intron 1 of 12)	4011.0	NM_024182	66878.0	Mm.28551	NM_024182	ENSMUSG00000024404	Riok3	1200013N13Rik|D18Ertd331e|E130306C24Rik|Sudd	RIO kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-61695486-4	chr10	61695408	61695608	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001272090)	promoter-TSS (NM_001272090)	-6.0	NM_001272090	71767.0	Mm.71514	NM_027912	ENSMUSG00000020087	Tysnd1	1300019N10Rik	trypsin domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-123653795-4	chr8	123653690	123653890	+	773.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133955)	promoter-TSS (NM_133955)	-139.0	NM_133955	69581.0	Mm.168257	NM_133955	ENSMUSG00000039960	Rhou	2310026M05Rik|AI182090|Arhu|CDC42L1|G28K|WRCH-1|WRCH1|mG28K	ras homolog family member U	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-43297976-2	chr3	43297876	43298076	+	593.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2A|LINE|L1	1555358.0	NM_027271	73852.0	Mm.29006	NM_027271	ENSMUSG00000025766	D3Ertd751e	2810009O15Rik|4930415G15Rik	DNA segment, Chr 3, ERATO Doi 751, expressed	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-36668748-1	chr5	36668648	36668848	+	570.0	f0_balb.idr	intron (NM_001081232, intron 2 of 8)	RLTR26_Mus|LTR|ERVK	27273.0	NM_001081232	320661.0	Mm.26480	NM_177221	ENSMUSG00000029190	D5Ertd579e	9030221A05Rik|A930018H20Rik|Kiaa0232	DNA segment, Chr 5, ERATO Doi 579, expressed	protein-coding	2.25974219254659	1.17374136658213	0.886287640743019	0.868576886782017	2.33951141302714	1.58125894779735	0.891254415406376	1.73614876847682	0.769992356713833	0.567348164688083	0.962562732139494
Merged-chr10-75830383-1	chr10	75830283	75830483	+	665.0	f0_balb.idr	Intergenic	RLTR11A2|LTR|ERVK	4498.0	NM_010361	14872.0	Mm.24118	NM_010361	ENSMUSG00000033318	Gstt2	AI266894|Yrs|mGSTT2	glutathione S-transferase, theta 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-35870378-9	chr16	35870279	35870479	+	819.4259030000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039530, intron 1 of 16)	intron (NM_001039530, intron 1 of 16)	1003.0	NM_001039530	547253.0	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-123502478-2	chr4	123502378	123502578	+	710.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199137, intron 19 of 92)	intron (NM_001199137, intron 19 of 92)	-90567.0	NM_001167918	442834.0	Mm.483803	NM_001167918		D830031N03Rik	Kiaa0754|mKIAA0754	RIKEN cDNA D830031N03 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-120500275-4	chr5	120500176	120500376	+	994.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023625, intron 1 of 11)	intron (NM_023625, intron 1 of 11)	3347.0	NM_023625	71772.0	Mm.100065	NM_023625	ENSMUSG00000029598	Plbd2	1300012G16Rik|AU019810|P76	phospholipase B domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-55429478-4	chr13	55429378	55429578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2674.0	NM_021489	58992.0	Mm.42224	NM_021489	ENSMUSG00000021492	F12	FXII|HAF	coagulation factor XII (Hageman factor)	protein-coding	5.40570871979906	4.7578076470766	5.47628178894404	5.50295730578835	5.50779015502594	4.79113063597487	5.51233551934749	5.52646087303606	0.0586377952445018	0.848371260032332	0.998431161219273
Merged-chr12-91877788-3	chr12	91877676	91877876	+	741.733337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28619.0	NM_011344	20338.0	Mm.250605	NM_011344	ENSMUSG00000020964	Sel1l	AW493766|Sel1h|mKIAA4137	sel-1 suppressor of lin-12-like (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91003494-2	chr16	91003394	91003594	+	904.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001045515, intron 2 of 32)	MER119|DNA|hAT-Charlie	7601.0	NM_001045515	104015.0	Mm.187079	NM_001045515	ENSMUSG00000022973	Synj1	A930006D20Rik|AA675315|mKIAA0910	synaptojanin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132569751-2	chr4	132569651	132569851	+	800.3000490000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081211, intron 1 of 1)	intron (NM_001081211, intron 1 of 1)	5684.0	NM_001081211	19204.0	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-51756564-4	chr11	51756470	51756670	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_175255, exon 1 of 23)	5' UTR (NM_175255, exon 1 of 23)	264.0	NM_001290785	77371.0	Mm.33878	NM_175255	ENSMUSG00000036391	Sec24a	-	Sec24 related gene family, member A (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-148731390-2	chr2	148731290	148731490	+	581.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019632, intron 1 of 10)	intron (NM_019632, intron 1 of 10)	1030.0	NM_019632	17957.0	Mm.274308	NM_019632	ENSMUSG00000027438	Napb	Brp14|E161|I47|SNARE|b-SNAP	N-ethylmaleimide sensitive fusion protein attachment protein beta	protein-coding	1.24419908551479	1.53115787851317	0.847781295182625	1.42918097891257	1.2544036331611	1.54377358575714	0.850596730119834	1.43713802704278	0.0362595250938456	0.978201301164403	0.998431161219273
Merged-chr15-54932121-2	chr15	54932021	54932221	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11975.0	NM_001285994	18606.0	Mm.250256	NM_015744	ENSMUSG00000022425	Enpp2	ATX|E-NPP 2|Npps2|PD-Ialpha|Pdnp2|lysoPLD	ectonucleotide pyrophosphatase/phosphodiesterase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59887978-4	chr15	59887787	59887987	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-92928.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-38223574-2	chr19	38223473	38223673	+	595.5	f0_c57.idr|f1_c57bl6.idr	intron (NM_001081075, intron 1 of 13)	intron (NM_001081075, intron 1 of 13)	559.0	NM_001081075	70567.0	Mm.30607	NM_001081075	ENSMUSG00000054237	Fra10ac1	5730455O13Rik|AI448293	FRA10AC1 homolog (human)	protein-coding	2.92787630253775	3.48785569736252	2.82926562340091	2.2724494477297	2.71796841760051	2.84239059562178	1.50626602229666	2.42395996266016	-0.919473292929775	0.247707038457742	0.747080687713142
Merged-chr3-98066647-4	chr3	98066561	98066761	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010928, intron 2 of 33)	B3|SINE|B2	53123.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-29384237-2	chr19	29384137	29384337	+	675.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021893, intron 6 of 6)	PB1D10|SINE|Alu	16799.0	NM_021893	60533.0	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-37335310-4	chr10	37335183	37335383	+	627.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-196357.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-35300775-2	chr15	35300675	35300875	+	696.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_054049, exon 2 of 4)	exon (NM_054049, exon 2 of 4)	4663.0	NM_054049	107587.0	Mm.46336	NM_054049	ENSMUSG00000022330	Osr2	5430409I15Rik|Osr2A|Osr2B	odd-skipped related 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-56183115-2	chr3	56183015	56183215	+	796.166687	f1_balb.idr|f1_c57bl6.idr	exon (NM_030595, exon 1 of 58)	exon (NM_030595, exon 1 of 58)	586.0	NM_030595	26422.0	Mm.384353	NM_030595	ENSMUSG00000027799	Nbea	Lyst2|mKIAA1544	neurobeachin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-172526823-3	chr1	172526724	172526924	+	832.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027972, intron 1 of 11)	MLT1N2|LTR|ERVL-MaLR	5694.0	NM_027972	71870.0	Mm.78373	NM_027972	ENSMUSG00000026546	Cfap45	1700028D05Rik|Ccdc19|Nesg1	cilia and flagella associated protein 45	protein-coding	2.74810887844752	3.59816767910628	3.48211582056988	2.99663483272093	1.753015016566	2.74331939768572	3.19964601980307	3.10184984912718	-0.758940392883304	0.279012501101612	0.782570111402433
Merged-chr15-36790556-1	chr15	36790456	36790656	+	556.0	f1_balb.idr	intron (NM_001356569, intron 3 of 6)	intron (NM_001356569, intron 3 of 6)	376.0	NM_001253807	22631.0	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-50926182-2	chr14	50926082	50926282	+	888.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_009687, exon 4 of 5)	exon (NM_009687, exon 4 of 5)	1233.0	NM_009687	11792.0	Mm.203	NM_009687	ENSMUSG00000035960	Apex1	APE|Apex|HAP1|Ref-1	apurinic/apyrimidinic endonuclease 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-93199948-3	chr14	93199857	93200057	+	760.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271800, intron 3 of 3)	MIR|SINE|MIR	690712.0	NM_001271800	211712.0	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding	2.66373742388264	2.38273853625073	2.29710361560485	1.6538209416086	3.18421096064077	1.48094190352312	3.31874881324171	3.45551054965995	1.42212792755184	0.0918859263268767	0.468860509244343
Merged-chr12-105026346-4	chr12	105026242	105026442	+	741.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4799.0	NR_037229	100526471.0		NR_037229	ENSMUSG00000106366	Mir3069	mir-3069|mmu-mir-3069	microRNA 3069	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-92398076-6	chr16	92398026	92398226	+	924.9722289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081549, intron 1 of 3)	intron (NM_001081549, intron 1 of 3)	1952.0	NM_019466	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115160921-3	chr5	115160830	115161030	+	881.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-2754.0	NM_175403	109154.0	Mm.153963	NM_175403	ENSMUSG00000048578	Mlec	2410014A08Rik|AI850530|ESTM19|X83352|mKIAA0152	malectin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-94950219-4	chr8	94950098	94950298	+	838.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26504.0	NM_001145972	382045.0	Mm.334726	NM_001033468	ENSMUSG00000061577	Adgrg5	Gm1109|Gpr114|PGR27	adhesion G protein-coupled receptor G5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-38478579-3	chr6	38478461	38478661	+	941.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177185, intron 7 of 16)	intron (NM_177185, intron 7 of 16)	-28764.0	NR_106130	102466843.0		NR_106130	ENSMUSG00000098285	Mir7670	Gm27707|mmu-mir-7670	microRNA 7670	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126583818-2	chr8	126583718	126583918	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9618.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-74053290-4	chr1	74053200	74053400	+	960.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289895, intron 3 of 32)	intron (NM_001289895, intron 3 of 32)	71147.0	NM_027884	21961.0	Mm.309975	NM_027884	ENSMUSG00000055322	Tns1	1110018I21Rik|1200014E20Rik|AI648117|E030018G17Rik|E030037J05Rik|Tns	tensin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56065908-2	chr17	56065808	56066008	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013733, intron 13 of 13)	B2_Mm1t|SINE|B2	13425.0	NM_024432	66530.0	Mm.28000	NM_024432	ENSMUSG00000019578	Ubxn6	1200008L11Rik|2210415J11Rik|AU040909|Ubxd1|Ubxdc2	UBX domain protein 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-122166345-2	chr2	122166241	122166441	+	886.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_080510, intron 1 of 6)	L1Md_F2|LINE|L1	5641.0	NM_080510	70928.0	Mm.379188	NM_080510	ENSMUSG00000033368	Trim69	4921519C19Rik|Rnf36|Trif|Trimless	tripartite motif-containing 69	protein-coding	3.75421952005252	3.95269321786879	3.56457487960701	3.39212260698875	2.24936813755281	3.02082079848414	3.15018511427588	3.32923635427426	-1.10398944951145	0.058813693892151	0.358328349110683
Merged-chr10-128194364-4	chr10	128194264	128194464	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285779)	promoter-TSS (NM_001285779)	-271.0	NM_001285777	216456.0	Mm.30102	NM_001033264	ENSMUSG00000044005	Gls2	A330074B06Rik|AI195532|GA|GLS|Lga	glutaminase 2 (liver, mitochondrial)	protein-coding	4.98486970853127	4.78183469096092	4.53943115563215	4.8384140947937	4.96543228328894	4.16283161390975	3.94687296674832	4.2841165672573	-0.482752208363581	0.211258861465749	0.700323931057359
Merged-chr9-89255866-2	chr9	89255766	89255966	+	631.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11B|LTR|ERVK	44482.0	NM_001359993	107885.0	Mm.486274	NM_026829	ENSMUSG00000066442	Mthfs	1110034I12Rik|2310020H23Rik|AI119695	5, 10-methenyltetrahydrofolate synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-134628770-3	chr4	134628672	134628872	+	823.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207237, intron 2 of 11)	intron (NM_207237, intron 2 of 11)	-60921.0	NR_105829	102465216.0		NR_105829	ENSMUSG00000099289	Mir6403	Gm27992|mmu-mir-6403	microRNA 6403	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-121331634-2	chr9	121331534	121331734	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_152160, intron 1 of 17)	L1M4|LINE|L1	34132.0	NR_152160	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72552892-4	chr6	72552784	72552984	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271395, intron 1 of 9)	intron (NM_001271395, intron 1 of 9)	3237.0	NM_001271395	12332.0	Mm.18626	NM_007599	ENSMUSG00000056737	Capg	gCap39|mbh1	capping protein (actin filament), gelsolin-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81106398-4	chr15	81106291	81106491	+	892.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001082536, intron 2 of 13)	intron (NM_001082536, intron 2 of 13)	-1344.0	NM_153049	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-35728506-4	chr5	35728429	35728629	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359895, intron 1 of 17)	intron (NM_001359895, intron 1 of 17)	747.0	NM_194344	231147.0	Mm.290429	NM_194344	ENSMUSG00000036553	Sh3tc1	4631428G15|BC024909	SH3 domain and tetratricopeptide repeats 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-30516573-4	chr5	30516478	30516678	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028483, intron 3 of 6)	intron (NM_028483, intron 3 of 6)	29258.0	NM_028483	73259.0	Mm.443299	NM_028483	ENSMUSG00000053194	Cib4	1700041E20Rik	calcium and integrin binding family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-8548658-2	chr9	8548558	8548758	+	682.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001282086, intron 1 of 11)	intron (NM_001282086, intron 1 of 11)	4516.0	NM_001282087	22068.0	Mm.325086	NM_013838	ENSMUSG00000031997	Trpc6	AV025995|LLHWJM002|LLHWJM003|LLHWJM004|TRP-6|Trrp6|mtrp6	transient receptor potential cation channel, subfamily C, member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100624649-2	chr11	100624549	100624749	+	892.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028024, intron 2 of 3)	PB1D9|SINE|Alu	1694.0	NM_028024	71966.0	Mm.274734	NM_028024	ENSMUSG00000017837	Nkiras2	2410003M04Rik|4930527H08Rik|D630018G21Rik|KBRAS2	NFKB inhibitor interacting Ras-like protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-6330707-2	chr7	6330607	6330807	+	736.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033249)	promoter-TSS (NM_001033249)	-273.0	NM_001033249	213011.0	Mm.333558	NM_001033249	ENSMUSG00000030443	Zfp583	BC056221|Znf583	zinc finger protein 583	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70518971-2	chr14	70518871	70519071	+	685.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_033241, intron 1 of 19)	(CA)n|Simple_repeat|Simple_repeat	1289.0	NM_009755	12153.0	Mm.27757	NM_009755	ENSMUSG00000022098	Bmp1	Pcp|Tld	bone morphogenetic protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59648499-4	chr15	59648368	59648568	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144549)	promoter-TSS (NM_144549)	-186.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-128722900-2	chr4	128722800	128723000	+	734.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_018774, intron 7 of 14)	intron (NM_018774, intron 7 of 14)	-4671.0	NM_001195083	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-58026546-2	chr11	58026446	58026646	+	872.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_028451, intron 1 of 18)	intron (NM_028451, intron 1 of 18)	17482.0	NM_028451	73158.0	Mm.248843	NM_028451	ENSMUSG00000037331	Larp1	1810024J12Rik|3110040D16Rik|Larp|mKIAA0731	La ribonucleoprotein domain family, member 1	protein-coding	0.845012460520328	0.59336154549656	0.768332553062772	1.13079821520877	0.852388141808535	1.11188882816197	0.586396643837514	1.32832002671285	0.763389392166451	0.615002377333755	1
Merged-chr11-94551620-2	chr11	94551520	94551720	+	571.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A2|LTR|ERVL-MaLR	-2413.0	NM_001013381	237926.0	Mm.342275	NM_001013381	ENSMUSG00000039096	Rsad1	B430319G23|BC056485	radical S-adenosyl methionine domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-87444952-2	chr11	87444852	87445052	+	591.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199293, intron 2 of 30)	intron (NM_001199293, intron 2 of 30)	17361.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-66649990-8	chr1	66649905	66650105	+	937.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175510, intron 47 of 64)	intron (NM_175510, intron 47 of 64)	-50826.0	NM_025683	66646.0	Mm.240912	NM_025683	ENSMUSG00000026005	Rpe	2810429B02Rik|5730518J08Rik	ribulose-5-phosphate-3-epimerase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-21421786-4	chr11	21421664	21421864	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50497.0	NM_001290634	216558.0	Mm.28877	NM_139297	ENSMUSG00000001891	Ugp2	UDPGP|UGPase	UDP-glucose pyrophosphorylase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122952348-3	chr5	122952241	122952441	+	854.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003953, intron 6 of 22)	CpG	36758.0	NM_001003953	30841.0	Mm.86406	NM_013910	ENSMUSG00000029475	Kdm2b	Cxxc2|Fbl10|Fbxl10|Jhdm1b|PCCX2	lysine (K)-specific demethylase 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-142598105-4	chr3	142597992	142598192	+	833.450012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010259, intron 1 of 10)	intron (NM_010259, intron 1 of 10)	3245.0	NM_010259	14468.0	Mm.457978	NM_010259	ENSMUSG00000040264	Gbp2b	Gbp-1|Gbp1|Mag-1|Mpa-1|Mpa1	guanylate binding protein 2b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-184480829-4	chr1	184480738	184480938	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	76853.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-90915007-2	chr1	90914907	90915107	+	642.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053015)	promoter-TSS (NM_053015)	-93.0	NM_053015	171531.0	Mm.105208	NM_053015	ENSMUSG00000026303	Mlph	2210418F23Rik|5031433I09Rik|AW228792|D1Wsu84e|Slac-2a|l(1)-3Rk|l1Rk3|ln	melanophilin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-143033404-2	chr5	143033304	143033504	+	702.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359851, intron 12 of 15)	B1_Mur2|SINE|Alu	73049.0	NM_007984	14086.0	Mm.289707	NM_007984	ENSMUSG00000029581	Fscn1	AI663989|Fan1|fascin-1	fascin actin-bundling protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80503734-2	chr10	80503634	80503834	+	694.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_139226, intron 1 of 1)	intron (NM_139226, intron 1 of 1)	8828.0	NM_139226	246086.0	Mm.250572	NM_139226	ENSMUSG00000045518	Onecut3	OC-3|Oc3	one cut domain, family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70787965-2	chr8	70787865	70788065	+	703.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_199308, exon 8 of 26)	exon (NM_199308, exon 8 of 26)	4468.0	NM_199308	546071.0	Mm.250731	NM_199308	ENSMUSG00000031833	Mast3	BC024265|mKIAA0561	microtubule associated serine/threonine kinase 3	protein-coding	0.770429053245821	0.831169022737205	1.79281851391227	1.91997196308471	0.774414406128124	0.835418566832742	1.80976413502861	1.93183943372159	0.0340566805299856	0.981676934730895	0.998431161219273
Merged-chr11-115634271-4	chr11	115634173	115634373	+	968.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5978.0	NM_001252395	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-10532742-2	chr10	10532642	10532842	+	625.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER67C|LTR|ERV1	25465.0	NM_026405	67844.0	Mm.31486	NM_026405	ENSMUSG00000019832	Rab32	2810011A17Rik|AU022057	RAB32, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166572589-2	chr2	166572489	166572689	+	609.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 35 of 39)	intron (NM_177782, intron 35 of 39)	8067.0	NR_152154	433503.0	Mm.491336	NR_152154		Gm29679	-	predicted gene, 29679	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-10792913-2	chr16	10792813	10793013	+	676.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008933)	promoter-TSS (NM_008933)	-808.0	NM_008933	19119.0	Mm.325769	NM_008933	ENSMUSG00000038015	Prm2	AI528784|Prm-2	protamine 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-125655449-1	chr7	125655349	125655549	+	567.0	f1_balb.idr	intron (NM_207239, intron 26 of 36)	intron (NM_207239, intron 26 of 36)	52020.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	-1.5061220274826	-1.47360709383584	-1.48343987814663	-1.49151681994238	-1.50383953926072	-1.47147628845725	-1.0170701920923	-1.49007105122263	2.15652851593596	0.535359572134045	1
Merged-chr2-70742775-4	chr2	70742662	70742862	+	636.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172664, intron 10 of 19)	L2b|LINE|L2	81253.0	NM_027352	70231.0	Mm.271950	NM_027352	ENSMUSG00000014959	Gorasp2	0610011A07Rik|2410043M02Rik|5730520M13Rik|9430094F20Rik|AW552058|GOLPH2|GRASP55|GRS2|p59	golgi reassembly stacking protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-57424367-4	chr16	57424271	57424471	+	971.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	71094.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-45499418-4	chr4	45499334	45499534	+	883.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033306, intron 1 of 5)	intron (NM_001033306, intron 1 of 5)	31394.0	NM_001033306	230126.0	Mm.251716	NM_001033306	ENSMUSG00000044813	Shb	BC028832	src homology 2 domain-containing transforming protein B	protein-coding	3.75831204310399	3.08513538813814	3.41558142735915	4.19991934904349	3.73288134951638	4.4739201930117	3.53340071102017	2.4357413276093	0.0593491874698706	0.920737081467517	0.998431161219273
Merged-chr7-29906925-1	chr7	29906825	29907025	+	796.0	f1_c57bl6.idr	promoter-TSS (NM_001285798)	promoter-TSS (NM_001285798)	-393.0	NM_001285798	22689.0	Mm.86747	NM_011754	ENSMUSG00000062040	Zfp27	Zfp-27|mkr-4|mszf76	zinc finger protein 27	protein-coding	2.36107613963086	1.18436427540849	1.1488285441416	2.9343440950413	3.05996368905746	1.48693905138656	2.16054645943535	1.60838379390649	0.218530897376283	0.843916748855603	0.998431161219273
Merged-chr17-56267050-2	chr17	56266996	56267196	+	816.150024	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	9671.0	NM_174989	106759.0	Mm.203952	NM_174989	ENSMUSG00000047123	Ticam1	AW046014|AW547018|TICAM-1|TRIF	toll-like receptor adaptor molecule 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-14851438-4	chr8	14851345	14851545	+	900.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37091.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-80623352-2	chr18	80623252	80623452	+	993.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_198429, intron 9 of 9)	intron (NM_198429, intron 9 of 9)	-78806.0	NR_028424	100039348.0	Mm.254722	NR_028424		Gm2176	A430076E10Rik	glucosamine-6-phosphate deaminase 1 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-46221456-2	chr3	46221379	46221579	+	592.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	226462.0	NM_001101479	241989.0	Mm.119234	NM_001101479	ENSMUSG00000090919	Pabpc4l	C330050A14Rik|EG241989	poly(A) binding protein, cytoplasmic 4-like	protein-coding	-0.939689859171677	-0.920375438977221	-0.931299611472457	0.0547743973239929	-0.938904031919501	-0.917255548672094	-0.930407580667812	-0.933885285392914	-3.35597997027105	0.279004136702824	1
Merged-chr1-177702482-5	chr1	177702379	177702579	+	822.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27335.0	NM_027077	69428.0	Mm.84467	NM_027077	ENSMUSG00000015962	1700016C15Rik	-	RIKEN cDNA 1700016C15 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-57804927-1	chr10	57804827	57805027	+	558.0	f0_balb.idr	intron (NM_020561, intron 3 of 7)	AT_rich|Low_complexity|Low_complexity	10383.0	NM_020561	57319.0	Mm.2379	NM_020561	ENSMUSG00000019872	Smpdl3a	0610010C24Rik|AI529588|ASM3A|ASML3|ASML3A	sphingomyelin phosphodiesterase, acid-like 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-24753582-2	chr5	24753482	24753682	+	632.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153076, intron 3 of 3)	intron (NM_153076, intron 3 of 3)	4261.0	NM_153076	214301.0	Mm.63484	NM_153076	ENSMUSG00000038135	Crygn	-	crystallin, gamma N	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-24638137-4	chr10	24638032	24638232	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008813, exon 25 of 25)	3' UTR (NM_008813, exon 25 of 25)	42690.0	NM_010217	14219.0	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6492026-2	chr19	6491926	6492126	+	840.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205234, intron 15 of 22)	intron (NM_001205234, intron 15 of 22)	51044.0	NM_009203	20521.0	Mm.391146	NM_009203	ENSMUSG00000061742	Slc22a12	AI987855|OAT4L|Rst|Slc22al2|URAT1	solute carrier family 22 (organic anion/cation transporter), member 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128804481-4	chr10	128804359	128804559	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178066)	promoter-TSS (NM_178066)	-12.0	NM_178066	73827.0	Mm.24630	NM_178066	ENSMUSG00000047090	Tmem198b	1110012D08Rik	transmembrane protein 198b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-33370703-2	chr2	33370603	33370803	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290570, intron 1 of 16)	intron (NM_001290570, intron 1 of 16)	791.0	NM_001290570	241308.0	Mm.274249	NM_175211	ENSMUSG00000038831	Ralgps1	5830418G11Rik|AI853783|AI854138|RALGEF2|RALGPS1A|RalGEF 2|mKIAA0351	Ral GEF with PH domain and SH3 binding motif 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-119813187-4	chr8	119813089	119813289	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028071, intron 3 of 3)	intron (NM_028071, intron 3 of 3)	27390.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-120795697-4	chr6	120795586	120795786	+	922.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007510, exon 9 of 9)	3' UTR (NM_007510, exon 9 of 9)	21918.0	NM_001081048	71803.0	Mm.425340	NM_001081048	ENSMUSG00000004902	Slc25a18	1500015I14Rik|AW125787	solute carrier family 25 (mitochondrial carrier), member 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-68844295-2	chr10	68844195	68844395	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	120549.0	NM_177794	327766.0	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123376796-4	chr5	123376695	123376895	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18003.0	NM_133917	208104.0	Mm.83277	NM_133917	ENSMUSG00000038342	Mlxip	AW228700|Mir|bHLHe36	MLX interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-20834734-4	chr10	20834640	20834840	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA5|LINE|L1	-109662.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28372839-4	chr7	28372738	28372938	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001083912)	promoter-TSS (NM_001083912)	-176.0	NM_001083912	101497.0	Mm.235700	NM_138752	ENSMUSG00000037552	Plekhg2	AI194308|Clg|Cslg	pleckstrin homology domain containing, family G (with RhoGef domain) member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132779846-2	chr4	132779746	132779946	+	848.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	11486.0	NM_011284	19891.0	Mm.2870	NM_011284	ENSMUSG00000028884	Rpa2	AA409079|AI325195|AU020965|RPA34|Rf-A2	replication protein A2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-97944153-3	chr7	97944040	97944240	+	787.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177696, intron 1 of 17)	MTA_Mm|LTR|ERVL-MaLR	24182.0	NM_177696	233537.0	Mm.375772	NM_177696	ENSMUSG00000035582	Gdpd4	4921513O04	glycerophosphodiester phosphodiesterase domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-54494981-1	chr4	54494881	54495081	+	1000.0	f0_balb.idr	Intergenic	Intergenic	-452964.0	NM_172867	242466.0	Mm.102904	NM_172867	ENSMUSG00000060206	Zfp462	6030417H05|9430078C22Rik|Gt4-2|Zfpip	zinc finger protein 462	protein-coding	1.36694311414777	1.18551160310961	0.936459035244998	1.87488759902027	1.24369457862977	1.92791083889223	1.85646043360477	1.13078591731602	0.647517622270401	0.597033866207928	0.971902489067841
Merged-chr5-64759238-4	chr5	64759133	64759333	+	840.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44290.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-60255676-1	chr2	60255576	60255776	+	555.0	f1_c57bl6.idr	intron (NM_001290660, intron 4 of 5)	RMER13B|LTR|ERVK	28808.0	NM_025422	66205.0	Mm.227281	NM_025422	ENSMUSG00000060703	Cd302	1110055L24Rik|AI159627	CD302 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-36740155-3	chr13	36740059	36740259	+	869.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-5682.0	NM_153529	68404.0	Mm.232930	NM_153529	ENSMUSG00000039114	Nrn1	0710008J23Rik|Cpg15|Nrn	neuritin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-20716485-8	chr16	20716388	20716588	+	909.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_009900, exon 1 of 24)	5' UTR (NM_009900, exon 1 of 24)	148.0	NM_009900	12724.0	Mm.177761	NM_009900	ENSMUSG00000022843	Clcn2	AL118368|ClC-2|Clc2|nmf240	chloride channel, voltage-sensitive 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-135789969-1	chr1	135789869	135790069	+	609.5	f0_balb.idr	Intergenic	Intergenic	-9452.0	NM_021467	21952.0	Mm.44379	NM_021467	ENSMUSG00000026418	Tnni1	2700018B22Rik|AI747285|ssTnI	troponin I, skeletal, slow 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-65074009-4	chr12	65073803	65074003	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013902)	promoter-TSS (NM_013902)	35.0	NM_013902	30795.0	Mm.28480	NM_013902	ENSMUSG00000020949	Fkbp3	25kDa|FKBP-3|FKBP25	FK506 binding protein 3	protein-coding	4.29228451979052	3.87498541105656	4.28227646521073	3.54950471582838	4.3250601301608	5.09630752059867	4.13632312993431	3.47725363125853	0.451209440668551	0.346259722145835	0.8471218399554
Merged-chr6-123207654-2	chr6	123207554	123207754	+	708.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-22189.0	NM_001190320	56620.0	Mm.271782	NM_020001	ENSMUSG00000023349	Clec4n	Clec6a|Clecsf10|Nkcl	C-type lectin domain family 4, member n	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-95842943-4	chr16	95842851	95843051	+	858.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040484, intron 2 of 3)	intron (NR_040484, intron 2 of 3)	55762.0	NR_040485	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-127331926-2	chr8	127331826	127332026	+	587.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013580, intron 3 of 13)	B3|SINE|B2	32274.0	NM_001013580	93742.0	Mm.299254	NM_033620	ENSMUSG00000025812	Pard3	AA960621|AI256638|Asip|D8Ertd580e|Par-3|Par3|Pard-3|Pard3a|Phip	par-3 family cell polarity regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-5100055-4	chr11	5099962	5100162	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001283063)	promoter-TSS (NM_001283063)	-103.0	NM_001290493	279766.0	Mm.260866	NM_177370	ENSMUSG00000034175	Rhbdd3	Ptag	rhomboid domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-108127890-4	chr6	108127770	108127970	+	820.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145937, intron 7 of 8)	intron (NM_145937, intron 7 of 8)	57713.0	NM_145937	58911.0	Mm.439876	NM_145937	ENSMUSG00000030101	Sumf1	AA543204|AI463102|AI851573|FGE	sulfatase modifying factor 1	protein-coding	1.64959672556738	1.73822926582925	1.40554394797389	1.37117097045221	1.56206849259104	1.05018582829623	1.56302394288455	1.93660927047523	0.0851317258569832	0.940839642498301	0.998431161219273
Merged-chr10-117910056-6	chr10	117909948	117910148	+	899.0166630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15411.0	NR_045342	71067.0	Mm.410793	NR_045342	ENSMUSG00000112500	4933411E08Rik	-	RIKEN cDNA 4933411E08 gene	ncRNA	1.03842351372233	0.898830154537611	1.48165161613395	1.69421183522054	1.04620342108245	1.16444945444411	1.63982256075894	2.48466190619384	1.2605285914211	0.307372561081051	0.808267677056645
Merged-chr1-182539549-4	chr1	182539443	182539643	+	999.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21933.0	NM_009794	12334.0	Mm.19306	NM_009794	ENSMUSG00000026509	Capn2	AI326419|CALP80|Capa-2|Capa2|m-calpain|m-calpin	calpain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-32656966-3	chr9	32656850	32657050	+	790.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39092.0	NM_011808	23871.0	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-101291227-1	chr3	101291127	101291327	+	548.0	f0_balb.idr	Intergenic	Intergenic	-3288.0	NM_013486	12481.0	Mm.22842	NM_013486	ENSMUSG00000027863	Cd2	LFA-2|Ly-37|Ly37	CD2 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-6216591-3	chr6	6216496	6216696	+	965.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177572, intron 1 of 17)	intron (NM_001177572, intron 1 of 17)	577.0	NM_015829	50799.0	Mm.24513	NM_015829	ENSMUSG00000015112	Slc25a13	AI785475|Ctrn	solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-163574171-2	chr2	163574071	163574271	+	761.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27016.0	NM_008261	15378.0	Mm.202383	NM_008261	ENSMUSG00000017950	Hnf4a	HNF-4|Hnf4|Hnf4alpha|MODY1|Nr2a1|TCF-14|Tcf14	hepatic nuclear factor 4, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117718462-2	chr10	117718362	117718562	+	835.916626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7704.0	NM_001288586	17246.0	Mm.22670	NM_010786	ENSMUSG00000020184	Mdm2	1700007J15Rik|AA415488|Mdm-2	transformed mouse 3T3 cell double minute 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-36179711-4	chr15	36179579	36179779	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_012031, exon 1 of 19)	5' UTR (NM_012031, exon 1 of 19)	149.0	NM_012031	26942.0	Mm.295539	NM_012031	ENSMUSG00000037617	Spag1	tpis	sperm associated antigen 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-120277198-4	chr14	120277099	120277299	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360380, intron 1 of 7)	intron (NM_001360380, intron 1 of 7)	1530.0	NM_001360380	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-10386951-2	chr17	10386851	10387051	+	658.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	62349.0	NR_045461	76634.0	Mm.491052	NR_045461	ENSMUSG00000099384	1700110C19Rik	-	RIKEN cDNA 1700110C19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-51955205-4	chr15	51955116	51955316	+	867.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36544.0	NM_009009	19357.0	Mm.182628	NM_009009	ENSMUSG00000022314	Rad21	SCC1|mKIAA0078	RAD21 cohesin complex component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21155511-2	chr9	21155411	21155611	+	790.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5605.0	NM_016742	12539.0	Mm.32331	NM_016742	ENSMUSG00000019471	Cdc37	p50|p50Cdc37	cell division cycle 37	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-11012801-3	chr16	11012665	11012865	+	850.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040518, intron 2 of 2)	intron (NR_040518, intron 2 of 2)	3867.0	NR_040518	100043147.0	Mm.489001	NR_040518	ENSMUSG00000097056	Gm4262	-	predicted gene 4262	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35979679-4	chr17	35979647	35979847	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001165892)	promoter-TSS (NM_001165892)	78.0	NM_001282013	75210.0	Mm.40036	NM_145487	ENSMUSG00000038500	Prr3	4930540G07Rik|Cat56	proline-rich polypeptide 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99032876-2	chr15	99032776	99032976	+	943.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_009448, intron 1 of 3)	intron (NM_009448, intron 1 of 3)	2985.0	NM_009448	22146.0	Mm.88212	NM_009448	ENSMUSG00000043091	Tuba1c	M[a]6|Tuba6	tubulin, alpha 1C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-13438108-4	chr16	13438023	13438223	+	965.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11400.0	NR_030549	100124432.0		NR_030549	ENSMUSG00000076972	Mir193b	Mir193|Mirn193b|mir-193b	microRNA 193b	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-4777043-4	chr13	4776933	4777133	+	953.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-167869.0	NM_018859	56043.0	Mm.251908	NM_018859	ENSMUSG00000045410	Akr1e1	1810061I10Rik|Akr1e2	aldo-keto reductase family 1, member E1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-156561796-3	chr3	156561682	156561882	+	677.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040399)	promoter-TSS (NR_040399)	-12.0	NM_177274	320840.0	Mm.317293	NM_177274	ENSMUSG00000040037	Negr1	5330422G01Rik|KILON|Ntra	neuronal growth regulator 1	protein-coding	0.487110268150465	-0.0166872371536554	0.14142849459985	0.126048952748505	0.414519143473086	-0.015680264732795	0.145817091305133	-0.023962726783383	-0.445120745507776	0.827542105628406	1
Merged-chr7-137314982-2	chr7	137314882	137315082	+	583.666687	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010096)	promoter-TSS (NM_010096)	-537.0	NM_010096	13593.0	Mm.258708	NM_010096	ENSMUSG00000010476	Ebf3	3110018A08Rik|O/E-2|mKIAA4201	early B cell factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-45433703-4	chr17	45433615	45433815	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_152810)	promoter-TSS (NM_152810)	-8.0	NM_152810	71702.0	Mm.28270	NM_152810	ENSMUSG00000023932	Cdc5l	1200002I02Rik|AA408004|PCDC5RP	cell division cycle 5-like (S. pombe)	protein-coding	1.41098367087506	1.46418874962994	1.66061227354668	1.05319198497749	0.830794406261484	1.4760559676769	1.9663207934204	0.851160015521992	-0.0903829704033055	0.945710461071133	0.998431161219273
Merged-chr8-75214452-2	chr8	75214349	75214549	+	572.0	f0_balb.idr|f1_balb.idr	intron (NM_029182, intron 1 of 2)	intron (NM_029182, intron 1 of 2)	505.0	NM_029182	75141.0	Mm.179267	NM_029182	ENSMUSG00000034472	Rasd2	4930526B11Rik|AU045414|Rhes|TEM-2|TEM2	RASD family, member 2	protein-coding	1.11478696972028	1.435366344914	2.11651246181466	1.50279349641885	1.12247395451226	1.76904106040252	2.2199326567065	0.947276382865122	0.0875144643164839	0.942205793788732	0.998431161219273
Merged-chr7-98872148-3	chr7	98872046	98872246	+	933.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33301.0	NM_001285795	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	1.97271730523856	2.78740395714326	2.60175381125805	2.61566644580891	1.27474541908896	1.88337655575481	2.62247003550917	2.09013149573727	-1.05494817034148	0.250626014813552	0.748509191602971
Merged-chr8-69919211-4	chr8	69919116	69919316	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286450, intron 3 of 12)	intron (NM_001286450, intron 3 of 12)	-16658.0	NM_023312	67184.0	Mm.21162	NM_023312	ENSMUSG00000036199	Ndufa13	2700054G14Rik|AU022060|CDA016|CGI-39|GRIM-19|Grim19	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-151941363-3	chr2	151941256	151941456	+	610.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009641, intron 7 of 8)	intron (NM_009641, intron 7 of 8)	26261.0	NR_035478	100316704.0		NR_035478	ENSMUSG00000088491	Mir1953	mir-1953|mmu-mir-1953	microRNA 1953	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97745008-7	chr11	97744913	97745113	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_054051)	promoter-TSS (NM_054051)	116.0	NR_106180	102466256.0		NR_106180	ENSMUSG00000098919	Mir8102	Gm27795|mmu-mir-8102	microRNA 8102	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-35296483-2	chr15	35296383	35296583	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_054049, intron 1 of 3)	CpG	371.0	NM_054049	107587.0	Mm.46336	NM_054049	ENSMUSG00000022330	Osr2	5430409I15Rik|Osr2A|Osr2B	odd-skipped related 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-4836513-4	chr7	4836464	4836664	+	915.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172737, exon 2 of 6)	exon (NM_172737, exon 2 of 6)	8132.0	NM_001290291	232813.0	Mm.44666	NM_172737	ENSMUSG00000053550	Shisa7	ckamp59	shisa family member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-83072179-3	chr13	83072078	83072278	+	946.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-373845.0	NR_039537	100628621.0		NR_039537	ENSMUSG00000106655	Mir3961	mmu-mir-3961	microRNA 3961	ncRNA	0.853533545774313	1.82201037013177	0.895759388428571	1.28485325603052	1.88929631585679	1.70613283311715	0.900132225840055	2.15806980299352	1.48356495535364	0.265199669935693	0.767868802425779
Merged-chr16-31276656-2	chr16	31276556	31276756	+	628.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1379.0	NM_025800	66849.0	Mm.291593	NM_025800	ENSMUSG00000047714	Ppp1r2	0610025N14Rik|2310007G06Rik|4930440J04Rik|5430408E15Rik|D16Ertd248e|I-2|IPP-2	protein phosphatase 1, regulatory (inhibitor) subunit 2	protein-coding	-0.0440007392919489	-0.184443581831112	0.798898902042456	-0.194772647415707	0.217435180650656	-0.18313751080587	-0.188973866188262	-0.193982637912381	-1.83633000482315	0.4295052774432	1
Merged-chr19-7276655-2	chr19	7276555	7276755	+	609.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007928, exon 18 of 18)	3' UTR (NM_007928, exon 18 of 18)	8376.0	NM_001320554	104383.0	Mm.283859	NM_054048	ENSMUSG00000024968	Rcor2	1A13|AW122124|CoREST|Rcor|Rcor1	REST corepressor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98364700-2	chr11	98364600	98364800	+	560.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021547, intron 1 of 14)	intron (NM_021547, intron 1 of 14)	6332.0	NM_021547	59045.0	Mm.265546	NM_021547	ENSMUSG00000018167	Stard3	Mln64|es64	START domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135449643-2	chr5	135449543	135449743	+	600.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146001, intron 8 of 30)	intron (NM_146001, intron 8 of 30)	-55097.0	NM_148932	107939.0	Mm.28399	NM_148932	ENSMUSG00000053293	Pom121	2610027A18Rik|C80273|mKIAA0618	nuclear pore membrane protein 121	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-42910223-4	chr16	42910155	42910355	+	867.6375119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285805, intron 1 of 10)	intron (NM_001285805, intron 1 of 10)	1815.0	NR_040402	100503040.0	Mm.490721	NR_040402		Gm19522	-	predicted gene, 19522	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-10419105-4	chr3	10418972	10419172	+	950.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_029068, exon 8 of 8)	3' UTR (NM_029068, exon 8 of 8)	21058.0	NM_029068	74718.0	Mm.440548	NM_029068	ENSMUSG00000027534	Snx16	4930522N22Rik|AI117577|AI747675	sorting nexin 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-150828733-3	chr2	150828639	150828839	+	941.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153781, intron 18 of 19)	intron (NM_153781, intron 18 of 19)	13831.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-40971970-4	chr4	40971859	40972059	+	975.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290448, intron 1 of 15)	B3|SINE|B2	1016.0	NM_023739	74164.0	Mm.247456	NM_023739	ENSMUSG00000028423	Nfx1	1300017N15Rik|3000003M19Rik|NFX.1|TEG-42|Tex42	nuclear transcription factor, X-box binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-18800610-4	chr13	18800516	18800716	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172120, intron 7 of 28)	intron (NM_172120, intron 7 of 28)	83324.0	NM_172120	218035.0	Mm.27389	NM_172120	ENSMUSG00000041236	Vps41	AI317346|Vam2|mVam2	VPS41 HOPS complex subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-8929492-4	chr19	8929406	8929606	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009073)	promoter-TSS (NM_009073)	-150.0	NM_009073	19881.0	Mm.426094	NM_009073	ENSMUSG00000071648	Rom1	M101156|Rgsc1156|Rom-1|Rosp1|Tspan23	rod outer segment membrane protein 1	protein-coding	4.51929567105227	4.25235349189166	4.24065410522073	4.394971995116	4.75648892681211	4.47097800331594	4.27220219210482	4.59741693739152	0.231877090025281	0.538014564735461	0.953963493057627
Merged-chr17-5025584-4	chr17	5025491	5025691	+	936.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 1 of 19)	intron (NM_001085355, intron 1 of 19)	30517.0	NM_001085355	239985.0	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3896182-2	chr12	3896082	3896282	+	944.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_153743, intron 3 of 17)	intron (NM_153743, intron 3 of 17)	4438.0	NM_153743	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-104288650-2	chr13	104288550	104288750	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_136938, intron 1 of 26)	intron (NR_136938, intron 1 of 26)	815.0	NM_001081020	108154.0	Mm.208125	NM_175496	ENSMUSG00000046169	Adamts6	A930019D11Rik|ADAM-TS6|b2b1879.1Clo|b2b2029Clo|b2b2182Clo|b2b2187.1Clo|b2b2228Clo	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-43568465-3	chr11	43568376	43568576	+	593.0	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	intron (NM_001045530, intron 3 of 5)	intron (NM_001045530, intron 3 of 5)	33086.0	NM_008375	16204.0	Mm.142716	NM_008375	ENSMUSG00000020405	Fabp6	GT|I-15P|I-BABP|ILBP|ILBP3|Illbp	fatty acid binding protein 6, ileal (gastrotropin)	protein-coding	2.58633285172758	2.4109465637805	2.17607711789712	2.72333952800793	2.69406692350937	3.33109476304543	2.48714422942783	2.27854293905925	0.546506871632878	0.469148114031783	0.924757197727779
Merged-chr2-164679346-4	chr2	164679247	164679447	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-5260.0	NM_001161806	629761.0	Mm.389336	NM_001161806	ENSMUSG00000078940	Wfdc11	-	WAP four-disulfide core domain 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-65115794-2	chr6	65115694	65115894	+	645.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001355250, exon 24 of 24)	3' UTR (NM_001355250, exon 24 of 24)	28936.0	NM_019455	54486.0	Mm.410688	NM_019455	ENSMUSG00000029919	Hpgds	H-PGDS|Ptgds2	hematopoietic prostaglandin D synthase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-28037799-4	chr5	28037710	28037910	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33602.0	NM_153526	231070.0	Mm.30221	NM_153526	ENSMUSG00000045294	Insig1	1810013C12Rik|Insig-1	insulin induced gene 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-120265399-4	chr1	120265289	120265489	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133186)	promoter-TSS (NM_133186)	-109.0	NM_133186	68428.0	Mm.181033	NM_133186	ENSMUSG00000026389	Steap3	1010001D01Rik|Tsap6|pHyde	STEAP family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-4389163-2	chr10	4389063	4389263	+	760.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1055.0	NM_001033466	381990.0	Mm.262466	NM_001033466	ENSMUSG00000075327	Zbtb2	Gm1103	zinc finger and BTB domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-51708798-4	chr3	51708674	51708874	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 2 of 4)	intron (NM_001004176, intron 2 of 4)	47595.0	NM_001310482	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-108883742-1	chr3	108883642	108883842	+	822.0	f0_balb.idr	intron (NM_001165965, intron 2 of 11)	intron (NM_001165965, intron 2 of 11)	6266.0	NM_177091	320181.0	Mm.244233	NM_177091	ENSMUSG00000045326	Fndc7	E230011A21Rik	fibronectin type III domain containing 7	protein-coding	-1.70064632323792	-1.81294470997006	-1.82198078978096	-1.82940329477929	-1.8407275618158	-1.81098655378014	-1.67775643191689	-1.82807466993338	0.0376840119903865	0.991491645451152	1
Merged-chr4-135270692-2	chr4	135270607	135270807	+	680.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013885, intron 1 of 5)	PB1D7|SINE|Alu	2053.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-100419366-4	chr3	100419273	100419473	+	855.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7032.0	NR_040543	73806.0	Mm.396549	NR_040543	ENSMUSG00000086923	4930406D18Rik	-	RIKEN cDNA 4930406D18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-15128539-3	chr3	15128429	15128629	+	970.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	157328.0	NR_040550	77127.0	Mm.195792	NR_040549	ENSMUSG00000098008	A930001A20Rik	-	RIKEN cDNA A930001A20 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-80067623-5	chr9	80067552	80067752	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311110, intron 1 of 23)	CpG	749.0	NM_146003	215351.0	Mm.28232	NM_146003	ENSMUSG00000034252	Senp6	2810017C20Rik|E130319N12Rik|Susp1|mKIAA0797	SUMO/sentrin specific peptidase 6	protein-coding	2.7021199289611	3.1495814012369	2.94121298654216	2.74821525342475	2.38305823489111	3.65567520353741	3.71883358128467	1.50394732614201	0.372267401808956	0.635056952705446	0.982417279970648
Merged-chr7-127915479-2	chr7	127915379	127915579	+	765.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_026370, exon 3 of 11)	exon (NM_026370, exon 3 of 11)	2465.0	NM_001360699	67773.0	Mm.425492	NM_026370	ENSMUSG00000030801	Kat8	2010203C02Rik|5830450F21Rik|D7Ertd629e|MOF|MYST-1|Myst1	K(lysine) acetyltransferase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45708367-4	chr7	45708290	45708490	+	936.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_016974, exon 3 of 4)	exon (NM_016974, exon 3 of 4)	3143.0	NM_016974	13170.0	Mm.24222	NM_016974	ENSMUSG00000059824	Dbp	-	D site albumin promoter binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47006195-4	chr17	47006078	47006278	+	726.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146078, intron 1 of 46)	L1MB5|LINE|L1	4354.0	NM_146078	224826.0	Mm.28234	NM_146078	ENSMUSG00000023977	Ubr2	9930021A08Rik|AI462103|AW540746|E130209G04Rik|mKIAA0349	ubiquitin protein ligase E3 component n-recognin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-99619201-3	chr5	99619097	99619297	+	719.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 1 of 3)	intron (NR_030692, intron 1 of 3)	109863.0	NR_030692	319818.0	Mm.295233	NR_030692	ENSMUSG00000089809	A930011G23Rik	-	RIKEN cDNA A930011G23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-70636977-2	chr13	70636877	70637077	+	545.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144837, intron 1 of 18)	intron (NM_144837, intron 1 of 18)	657.0	NM_144837	218333.0	Mm.139738	NM_144837	ENSMUSG00000034525	Ice1	C77245|mKIAA0947	interactor of little elongation complex ELL subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-143135105-3	chr6	143135006	143135206	+	653.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153819, intron 5 of 8)	intron (NR_153819, intron 5 of 8)	18825.0	NR_153819	102633311.0	Mm.333484	NR_153819		Gm31108	Gm31169	predicted gene, 31108	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-37489055-2	chr19	37488955	37489155	+	635.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23801.0	NR_131009	78640.0	Mm.234265	NR_131008		1700122C19Rik	-	RIKEN cDNA 1700122C19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45316312-2	chr7	45316212	45316412	+	570.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175130, intron 14 of 24)	intron (NM_175130, intron 14 of 24)	-8646.0	NR_110499	100040970.0	Mm.289810	NR_110499	ENSMUSG00000046721	Rpl14-ps1	Gm9811	ribosomal protein L14, pseudogene 1	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-95840249-4	chr11	95840136	95840336	+	872.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163464, intron 1 of 7)	intron (NM_001163464, intron 1 of 7)	-2059.0	NM_023121	14710.0	Mm.46299	NM_023121	ENSMUSG00000038811	Gngt2	AV096488	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-44908235-4	chr12	44908122	44908322	+	855.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144552, intron 2 of 5)	intron (NM_144552, intron 2 of 5)	166261.0	NM_144552	217517.0	Mm.285400	NM_144552	ENSMUSG00000046314	Stxbp6	BC024598|C85317	syntaxin binding protein 6 (amisyn)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-93451850-2	chr2	93451765	93451965	+	576.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040533)	promoter-TSS (NR_040533)	807.0	NM_001271462	12521.0	Mm.4261	NM_007656	ENSMUSG00000027215	Cd82	AA682076|AL023070|C33|IA4|Kai1|Tspan27	CD82 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-126152078-4	chr2	126151982	126152182	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026981)	promoter-TSS (NM_026981)	-59.0	NM_001355583	69185.0	Mm.29019	NM_026981	ENSMUSG00000023330	Dtwd1	1810033A06Rik	DTW domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-116977168-4	chr2	116977054	116977254	+	887.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	77002.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-86583770-4	chr6	86583673	86583873	+	911.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44401.0	NM_026414	67855.0	Mm.183043	NM_026414	ENSMUSG00000033508	Asprv1	2300003P22Rik|AA986851|SASP|SASPase|Taps	aspartic peptidase, retroviral-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-119378417-2	chr9	119378317	119378517	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359699, intron 9 of 17)	(CA)n|Simple_repeat|Simple_repeat	21036.0	NM_001359699	102448.0	Mm.219497	NM_001033209	ENSMUSG00000035769	Xylb	AI132223|AI327421	xylulokinase homolog (H. influenzae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-71390122-4	chr2	71390005	71390205	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026115, intron 2 of 10)	intron (NM_026115, intron 2 of 10)	845.0	NM_026115	107435.0	Mm.272472	NM_026115	ENSMUSG00000027018	Hat1	2410071B14Rik|AA536933|Hat-1|KAT1	histone aminotransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-28215477-7	chr6	28215373	28215573	+	971.619019	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	46128.0	NM_001081678	627049.0	Mm.84441	NM_001081678	ENSMUSG00000039841	Zfp800	AA407452|Znf800	zinc finger protein 800	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-92659574-4	chr1	92659479	92659679	+	877.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10738.0	NM_153114	260301.0	Mm.219545	NM_153114	ENSMUSG00000044055	Otos	OTOSP	otospiralin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-99391838-2	chr6	99391738	99391938	+	554.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_053202, intron 1 of 18)	intron (NM_053202, intron 1 of 18)	43507.0	NM_053202	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-180023858-2	chr2	180023745	180023945	+	646.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-1142.0	NM_177727	241846.0	Mm.21577	NM_177727	ENSMUSG00000039108	Lsm14b	9430078B04|BC040823	LSM family member 14B	protein-coding	-0.536074528372749	-0.524788319225501	-0.528492444483358	-0.5313459469584	0.0307557989653078	-0.523952490228114	-0.527676014881988	0.00481505895087453	3.46454061671619	0.207129974887316	1
Merged-chr6-4997769-3	chr6	4997663	4997863	+	857.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181595, intron 2 of 15)	intron (NM_181595, intron 2 of 15)	94443.0	NM_181595	243725.0	Mm.332901	NM_181595	ENSMUSG00000032827	Ppp1r9a	2810430P21Rik|4930518N04Rik|5330407E15|A230094E16Rik|BB181831|NRB|mKIAA1222|neurabin-I	protein phosphatase 1, regulatory (inhibitor) subunit 9A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-6354178-2	chr4	6354070	6354270	+	666.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11510.0	NM_016807	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88072022-4	chr3	88071915	88072115	+	816.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172526, intron 6 of 9)	intron (NM_172526, intron 6 of 9)	6289.0	NM_172526	214191.0	Mm.229191	NM_172526	ENSMUSG00000051036	Ttc24	A430025D11Rik	tetratricopeptide repeat domain 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-4235790-2	chr12	4235690	4235890	+	670.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001204912, intron 1 of 1)	MTD|LTR|ERVL-MaLR	1763.0	NM_001204912	69709.0	Mm.250552	NM_001204912	ENSMUSG00000096199	Ptrhd1	2410017P09Rik	peptidyl-tRNA hydrolase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-7869407-4	chr9	7869269	7869469	+	902.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007464, intron 1 of 8)	intron (NM_007464, intron 1 of 8)	3801.0	NM_007464	11796.0	Mm.2026	NM_007464	ENSMUSG00000032000	Birc3	AW107670|Api1|Api2|Birc2|C-IAP2|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF49|cIAP-1|cIAP-2|cIAP1|cIAP2	baculoviral IAP repeat-containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-33303142-4	chr12	33303024	33303224	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033436, intron 1 of 7)	intron (NM_001033436, intron 1 of 7)	609.0	NM_001033436	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-164088073-4	chr1	164087987	164088187	+	916.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26011.0	NM_011346	20343.0	Mm.1461	NM_011346	ENSMUSG00000026581	Sell	AI528707|CD62L|L-selectin|LECAM-1|Lnhr|Ly-22|Ly-m22|Lyam-1|Lyam1	selectin, lymphocyte	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-39379955-4	chr6	39379808	39380008	+	942.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1445.0	NM_011226	19331.0	Mm.123866	NM_011226	ENSMUSG00000029923	Rab19	-	RAB19, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-182012576-2	chr2	182012476	182012676	+	750.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TTAGGG)n|Simple_repeat|Simple_repeat	21350.0	NM_001205282	672125.0	Mm.489571	NM_001205282	ENSMUSG00000098505	Gm14496	-	predicted gene 14496	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95427530-2	chr3	95427430	95427630	+	798.166687	f1_balb.idr|f1_c57bl6.idr	intron (NR_033637, intron 1 of 2)	RLTR41|LTR|ERV1	181.0	NR_033637	100043305.0	Mm.412052	NR_033637		Gm4349	-	SET domain, bifurcated 1 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-88487952-4	chr16	88487851	88488051	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19027.0	NM_181490	239931.0	Mm.126860	NM_181490	ENSMUSG00000055811	Cldn17	-	claudin 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-95808103-4	chr8	95808016	95808216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178078)	promoter-TSS (NM_178078)	-654.0	NM_001205226	234594.0	Mm.259220	NM_153164	ENSMUSG00000036550	Cnot1	6030411K04Rik|AA815922|D830048B13	CCR4-NOT transcription complex, subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-96876539-1	chr10	96876439	96876639	+	546.0	f0_balb.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-159229.0	NR_045358	75301.0	Mm.108650	NR_045358	ENSMUSG00000111924	4930556N09Rik	-	RIKEN cDNA 4930556N09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-59347545-2	chr2	59347445	59347645	+	630.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 17 of 20)	intron (NM_175464, intron 17 of 20)	39137.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-31576841-1	chr17	31576741	31576941	+	540.0	f0_balb.idr	intron (NM_016670, intron 1 of 10)	ORR1F-int|LTR|ERVL-MaLR	12068.0	NM_016670	18771.0	Mm.259295	NM_016670	ENSMUSG00000006705	Pknox1	D17Wsu76e|PREP1	Pbx/knotted 1 homeobox	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117802863-1	chr8	117802763	117802963	+	546.0	f1_balb.idr	promoter-TSS (NM_026758)	promoter-TSS (NM_026758)	-889.0	NM_001357232	68533.0	Mm.181836	NM_026758	ENSMUSG00000031843	Mphosph6	1110001M01Rik|AA536809|C86426	M phase phosphoprotein 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122437330-2	chr8	122437230	122437430	+	926.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_028354, intron 7 of 10)	intron (NR_028354, intron 7 of 10)	-4390.0	NM_007806	13057.0	Mm.271671	NM_007806	ENSMUSG00000006519	Cyba	b558|nmf333|p22-phox|p22phox	cytochrome b-245, alpha polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-30634185-2	chr14	30634085	30634285	+	836.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7977.0	NM_011103	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80174964-3	chr10	80174898	80175098	+	871.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_027207, exon 3 of 3)	3' UTR (NM_027207, exon 3 of 3)	2054.0	NM_027207	69770.0	Mm.302754	NM_027207	ENSMUSG00000035595	1600002K03Rik	-	RIKEN cDNA 1600002K03 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116018274-4	chr11	116018126	116018326	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5507.0	NM_016905	14635.0	Mm.2820	NM_016905	ENSMUSG00000020766	Galk1	AA409894|GALK|Gk|Glk|Glk1	galactokinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-32283506-4	chr17	32283398	32283598	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286630, intron 1 of 19)	intron (NM_001286630, intron 1 of 19)	625.0	NM_198094	57261.0	Mm.253518	NM_020508	ENSMUSG00000024002	Brd4	Brd5|HUNK1|MCAP|WI-11513	bromodomain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-13978373-2	chr1	13978273	13978473	+	936.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-191444.0	NR_004447	433273.0	Mm.304088	NR_004447	ENSMUSG00000097711	Gm5523	EG433273	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-9780029-2	chr3	9779929	9780129	+	639.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_053182, intron 1 of 7)	intron (NM_053182, intron 1 of 7)	53650.0	NM_053182	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-88123891-4	chr17	88123807	88124007	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-1605.0	NM_001190356	225058.0	Mm.312053	NM_001190356		Gm4832	EG225058	predicted gene 4832	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4855849-1	chr19	4855749	4855949	+	544.0	f1_balb.idr	intron (NM_019861, intron 2 of 13)	intron (NM_019861, intron 2 of 13)	720.0	NM_019861	56464.0	Mm.29561	NM_019861	ENSMUSG00000083282	Ctsf	AI481912	cathepsin F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-24684693-4	chr13	24684587	24684787	+	898.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080381, intron 8 of 14)	intron (NM_001080381, intron 8 of 14)	46039.0	NM_029679	193385.0	Mm.217319	NM_029679	ENSMUSG00000036006	Ripor2	Fam65b	RHO family interacting cell polarization regulator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-43173441-4	chr13	43173338	43173538	+	858.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1937.0	NM_001252640	67046.0	Mm.269213	NM_025935	ENSMUSG00000021368	Tbc1d7	2610009C09Rik	TBC1 domain family, member 7	protein-coding	3.35837430825473	2.75747151919701	3.39075913322776	4.17357537077011	3.91580774677737	4.24682371830674	2.29603655397523	3.88816624270148	0.347300211673938	0.573989771393465	0.964527909969019
Merged-chr8-126851528-2	chr8	126851428	126851628	+	801.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_151740, exon 2 of 2)	non-coding (NR_151740, exon 2 of 2)	2508.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-50482939-4	chr9	50482834	50483034	+	895.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11591.0	NM_029639	76509.0	Mm.29959	NM_029639	ENSMUSG00000032068	Plet1	0610037B23Rik|1600029D21Rik|AA407923|AU043048	placenta expressed transcript 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85702343-2	chr12	85702243	85702443	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016767, intron 2 of 2)	intron (NM_016767, intron 2 of 2)	15623.0	NM_016767	53314.0	Mm.6672	NM_016767	ENSMUSG00000034266	Batf	B-ATF|SFA-2	basic leucine zipper transcription factor, ATF-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-96913883-2	chr5	96913783	96913983	+	859.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7389.0	NR_131152	666266.0	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	1.93648555478409	3.00023836625501	0.988123149308517	0.961169204660839	1.95559571493525	2.7383622217772	0.995612617492454	1.46145386541458	-0.152808480159912	0.901217296051079	0.998431161219273
Merged-chr8-106936174-1	chr8	106936074	106936274	+	982.0	f0_balb.idr	exon (NM_009229, exon 1 of 7)	exon (NM_009229, exon 1 of 7)	424.0	NM_009229	20650.0	Mm.30228	NM_009229	ENSMUSG00000041308	Sntb2	Snt2	syntrophin, basic 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-51667372-2	chr12	51667272	51667472	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001172098, intron 1 of 15)	intron (NM_001172098, intron 1 of 15)	-23594.0	NM_001329699	11782.0	Mm.386749	NM_021710	ENSMUSG00000020955	Ap4s1	AI314282	adaptor-related protein complex AP-4, sigma 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64391614-4	chr5	64391530	64391730	+	976.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	76312.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	5.27927004075873	5.76569230775169	5.68048054801293	5.35846285914534	6.24030833230844	5.62998024437717	6.18267461665016	5.19761618894035	0.392714065501597	0.179653233785253	0.651048857487728
Merged-chr17-73934880-2	chr17	73934780	73934980	+	751.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_011723, intron 5 of 35)	intron (NM_011723, intron 5 of 35)	15316.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-95839141-3	chr16	95839020	95839220	+	734.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040485, intron 3 of 3)	intron (NR_040485, intron 3 of 3)	59593.0	NR_040485	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-20882223-2	chr10	20882123	20882323	+	587.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-70324.0	NM_026203	52906.0	Mm.253280	NM_026203	ENSMUSG00000019986	Ahi1	1700015F03Rik|Ahi-1|D10Bwg0629e	Abelson helper integration site 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-26393121-3	chr6	26393019	26393219	+	558.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	461693.0	NR_040771	626904.0	Mm.126787	NR_040771	ENSMUSG00000106799	Gm20756	-	predicted gene, 20756	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-80470983-3	chr18	80470875	80471075	+	788.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-1308.0	NM_026295	67655.0	Mm.312893	NM_026295	ENSMUSG00000033323	Ctdp1	4930563P03Rik|AW553592	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-79946192-4	chr15	79946134	79946334	+	890.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13588.0	NM_144811	52609.0	Mm.323442	NM_144811	ENSMUSG00000053411	Cbx7	1600014J01Rik|AI851678|D15Ertd417e	chromobox 7	protein-coding	4.27849680488061	4.40652796007933	3.55082956315424	3.70172603683969	3.37504025595668	4.9746668043656	3.84031387328009	4.46605327382785	0.345621952518732	0.486846970659832	0.932610354988537
Merged-chr3-96219776-4	chr3	96219675	96219875	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178213)	promoter-TSS (NM_178213)	-141.0	NM_178213	621893.0		NM_178213	ENSMUSG00000063689	Hist2h2ab	EG621893|H2a-613a	histone cluster 2, H2ab	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100230748-3	chr7	100230656	100230856	+	617.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027629, intron 1 of 13)	intron (NM_027629, intron 1 of 13)	3149.0	NM_027629	70974.0	Mm.440524	NM_027629	ENSMUSG00000030729	Pgm2l1	4931406N15Rik|AI553438|BM32A	phosphoglucomutase 2-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-42450992-2	chr7	42450892	42451092	+	801.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2912.0	NM_027702	71162.0	Mm.158598	NM_027702	ENSMUSG00000030463	4933421I07Rik	-	RIKEN cDNA 4933421I07 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70447598-4	chr11	70447509	70447709	+	963.6083369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4322.0	NM_025397	66172.0	Mm.46424	NM_025397	ENSMUSG00000018923	Med11	1110030J09Rik|AI465144|AW545069	mediator complex subunit 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-13153376-2	chr8	13153272	13153472	+	714.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5789.0	NM_001317353	16783.0	Mm.16716	NM_010684	ENSMUSG00000031447	Lamp1	CD107a|LGP-120|LGP-A|Lamp-1|P2B|Perk	lysosomal-associated membrane protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-94588174-4	chr3	94588077	94588277	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1E1A|LTR|ERVL-MaLR	-5461.0	NM_029721	76742.0	Mm.28160	NM_029721	ENSMUSG00000028136	Snx27	5730552M22Rik|ESTM45|ESTM47|R75405	sorting nexin family member 27	protein-coding	2.80440166117518	2.31786266041509	2.52598807630683	3.09121401671241	2.46877200334897	2.75398850247662	2.54476150743396	3.03653523212586	-0.0106874405262077	0.988134582560823	0.998431161219273
Merged-chr8-123331595-4	chr8	123331482	123331682	+	788.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1131.0	NM_172287	234857.0	Mm.150200	NM_172287	ENSMUSG00000010154	Spire2	BC026502|Spir-2|Spir2	spire type actin nucleation factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-4908397-4	chr17	4908302	4908502	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-86672.0	NM_001085355	239985.0	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-122225480-2	chr9	122225380	122225580	+	552.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271873, intron 11 of 12)	intron (NM_001271873, intron 11 of 12)	48548.0	NR_106185	102465896.0		NR_106185	ENSMUSG00000098922	Mir8106	Gm27594|mmu-mir-8106	microRNA 8106	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21181640-4	chr9	21181531	21181731	+	974.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183408, intron 1 of 14)	CpG	-2470.0	NM_001310750	18577.0	Mm.191749	NM_019798	ENSMUSG00000032177	Pde4a	D9Ertd60e|Dpde2	phosphodiesterase 4A, cAMP specific	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19253887-4	chr7	19253783	19253983	+	890.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17971.0	NM_001282021	22323.0	Mm.9684	NM_009499	ENSMUSG00000030403	Vasp	-	vasodilator-stimulated phosphoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-66009541-2	chr5	66009441	66009641	+	902.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5256.0	NR_027961	231253.0	Mm.436542	NM_177679	ENSMUSG00000054598	9130230L23Rik	-	RIKEN cDNA 9130230L23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-11071321-3	chr8	11071234	11071434	+	934.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62904.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-9829247-4	chr3	9829165	9829365	+	837.837524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195031, intron 1 of 8)	MIRb|SINE|MIR	4414.0	NM_053182	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	2.16276695753857	2.42459756312583	2.20952521103562	3.04043878952555	2.64586991910177	1.46436014921172	2.36165444362016	2.51161399136802	-0.402559728472068	0.642512640459045	0.982823301118608
Merged-chr9-56119363-2	chr9	56119263	56119463	+	671.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011193, intron 3 of 14)	intron (NM_011193, intron 3 of 14)	29387.0	NM_011193	19200.0	Mm.2534	NM_011193	ENSMUSG00000032322	Pstpip1	CD2BP1|def-2	proline-serine-threonine phosphatase-interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-106140986-4	chr8	106140869	106141069	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3995.0	NM_176838	77411.0	Mm.183003	NM_176838	ENSMUSG00000084128	Esrp2	9530027K23Rik|Rbm35b	epithelial splicing regulatory protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-54132845-4	chr10	54132732	54132932	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56910.0	NR_038016	100502920.0	Mm.403982	NR_038016	ENSMUSG00000097069	Gm16998	-	predicted gene, 16998	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-83037040-2	chr15	83036940	83037140	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3643.0	NM_001271411	74039.0	Mm.32584	NM_028728	ENSMUSG00000058099	Nfam1	4921501M20Rik|Cnaip	Nfat activating molecule with ITAM motif 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-76118181-2	chr10	76118081	76118281	+	744.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-7163.0	NM_023219	64454.0	Mm.155678	NM_023219	ENSMUSG00000020226	Slc5a4b	2010104G07Rik|SAAT1|SGLT3-b|SGLT3b|pSGLT2	solute carrier family 5 (neutral amino acid transporters, system A), member 4b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-66784068-2	chr15	66783968	66784168	+	734.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001029841, intron 6 of 7)	intron (NM_001029841, intron 6 of 7)	47761.0	NM_001029841	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-102575321-2	chr4	102575221	102575421	+	976.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_019840, intron 6 of 14)	intron (NM_019840, intron 6 of 14)	5261.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-12322044-4	chr15	12321982	12322182	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025673, intron 1 of 3)	CpG	586.0	NM_025673	66629.0	Mm.157655	NM_025673	ENSMUSG00000022200	Golph3	4733401N08Rik|5730410D03Rik|AW413496	golgi phosphoprotein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-20817391-3	chr1	20817315	20817515	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008563, exon 3 of 17)	exon (NM_008563, exon 3 of 17)	2897.0	NM_008563	17215.0	Mm.4502	NM_008563	ENSMUSG00000041859	Mcm3	AL033361|C80350|Mcmd|P1|P1-MCM3|p1.m	minichromosome maintenance complex component 3	protein-coding	1.3165757103324	2.30546280922925	1.89114985487178	1.37013962946159	2.22587899308818	1.65239720893817	2.14199351643767	1.71259660130237	0.478792414811932	0.642508684513716	0.982823301118608
Merged-chr11-35833429-4	chr11	35833365	35833565	+	900.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025936, intron 1 of 14)	intron (NM_025936, intron 1 of 14)	1063.0	NM_025936	104458.0	Mm.284906	NM_025936	ENSMUSG00000018848	Rars	2610011N19Rik|2610037E21Rik|AL033339|AW985894	arginyl-tRNA synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-91540542-4	chr1	91540454	91540654	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039126)	promoter-TSS (NM_001039126)	-11.0	NM_001039126	65247.0	Mm.234152	NM_023046	ENSMUSG00000026311	Asb1	1700029O08Rik|1700054C17Rik|AI426616|AI851378|mKIAA1146	ankyrin repeat and SOCS box-containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117896931-1	chr10	117896831	117897031	+	694.0	f1_c57bl6.idr	Intergenic	Intergenic	-28528.0	NR_045342	71067.0	Mm.410793	NR_045342	ENSMUSG00000112500	4933411E08Rik	-	RIKEN cDNA 4933411E08 gene	ncRNA	-0.438351594042407	-0.425427847780929	-0.429659466749735	0.297394449225053	0.053645152726585	-0.424474292664961	-0.428725955143447	-0.432355136353226	-0.771591549631573	0.776621219251739	1
Merged-chr6-83696873-4	chr6	83696775	83696975	+	612.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_002871, intron 3 of 5)	intron (NR_002871, intron 3 of 5)	13950.0	NR_075094	574519.0	Mm.487605	NR_002871	ENSMUSG00000085794	Vax2os	Vas2os|Vax2os1|Vax2os2	ventral anterior homeobox 2, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-66298041-2	chr9	66297941	66298141	+	544.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-52409.0	NM_145617	235439.0	Mm.244179	NM_145617	ENSMUSG00000038664	Herc1	2810449H11Rik|B230218H07|D130015N03Rik|tbl	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90507756-2	chr2	90507656	90507856	+	745.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	-28582.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-15279969-4	chr9	15279878	15280078	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144933)	promoter-TSS (NM_144933)	-111.0	NM_144933	234959.0	Mm.44151	NM_144933	ENSMUSG00000031935	Med17	77kDa|C330002H14Rik|Crsp6|Trap80	mediator complex subunit 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-88306549-3	chr6	88306443	88306643	+	814.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149744, intron 3 of 5)	intron (NR_149744, intron 3 of 5)	84275.0	NM_019964	56691.0	Mm.272871	NM_019964	ENSMUSG00000048206	Dnajb8	1700016F14Rik|1700031F10Rik|AI326313|mDj6	DnaJ heat shock protein family (Hsp40) member B8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-136230828-4	chr3	136230722	136230922	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033350, intron 6 of 16)	intron (NM_001033350, intron 6 of 16)	95244.0	NM_001310749	242248.0	Mm.30832	NM_001033350	ENSMUSG00000037922	Bank1	A530094C12Rik|AI451642|AVIEF|BANK	B cell scaffold protein with ankyrin repeats 1	protein-coding	0.183012217918596	0.901060605767661	1.14928436418662	0.194332619328708	0.184708622603466	0.77815782808471	0.202971956071532	0.195512787464255	-1.78287199555544	0.382892685489013	1
Merged-chr10-8251750-4	chr10	8251616	8251816	+	768.741699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177387, intron 5 of 7)	intron (NM_177387, intron 5 of 7)	267109.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-8242533-2	chr14	8242433	8242633	+	729.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_053115, intron 12 of 14)	intron (NM_053115, intron 12 of 14)	16306.0	NM_001161667	93732.0	Mm.28700	NM_053115	ENSMUSG00000021751	Acox2	THCCox	acyl-Coenzyme A oxidase 2, branched chain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-144699234-4	chr3	144699149	144699349	+	878.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019464, intron 5 of 8)	intron (NM_019464, intron 5 of 8)	21086.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-9096656-2	chr13	9096556	9096756	+	860.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_172585, intron 1 of 17)	intron (NM_172585, intron 1 of 17)	2775.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-142718153-2	chr5	142718053	142718253	+	746.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_146257, intron 7 of 10)	intron (NM_146257, intron 7 of 10)	16052.0	NM_146257	243328.0	Mm.125942	NM_146257	ENSMUSG00000050822	Slc29a4	ENT4|mPMAT	solute carrier family 29 (nucleoside transporters), member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-4787257-3	chr10	4787154	4787354	+	920.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302531, intron 4 of 8)	MLT1B|LTR|ERVL-MaLR	77096.0	NM_001302533	13982.0	Mm.9213	NM_007956	ENSMUSG00000019768	Esr1	ER|ER-alpha|ERa|ERalpha|ESR|Estr|Estra|Nr3a1	estrogen receptor 1 (alpha)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-79586155-2	chr14	79586055	79586255	+	694.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1505.0	NM_026474	67955.0	Mm.18972	NM_026474	ENSMUSG00000022024	Sugt1	2410174K12Rik|SGT1	SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-43139787-4	chr1	43139683	43139883	+	999.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010212, intron 3 of 5)	intron (NM_010212, intron 3 of 5)	24178.0	NM_010212	14200.0	Mm.6799	NM_010212	ENSMUSG00000008136	Fhl2	FHL-2|SLIM-3|SLIM3	four and a half LIM domains 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-113845494-2	chr13	113845394	113845594	+	744.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172595, intron 1 of 4)	intron (NM_172595, intron 1 of 4)	50986.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128096849-4	chr10	128096758	128096958	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054078, intron 2 of 29)	CpG	4075.0	NM_054078	116848.0	Mm.252213	NM_054078	ENSMUSG00000040054	Baz2a	AA415431|C030005G16Rik|C78388|Tip5|Walp3|mKIAA0314	bromodomain adjacent to zinc finger domain, 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153140183-2	chr2	153140083	153140283	+	722.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001172117, intron 10 of 12)	L2c|LINE|L2	-21118.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-180710102-4	chr2	180710021	180710221	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177852)	promoter-TSS (NM_177852)	-105.0	NM_001289652	76425.0	Mm.41464	NM_029607	ENSMUSG00000027573	Gid8	2310003C23Rik|4833420G11Rik|AI451474|Twa1	GID complex subunit 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-24612747-4	chr1	24612645	24612845	+	866.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25308.0	NM_007733	12823.0	Mm.329196	NM_007733	ENSMUSG00000026141	Col19a1	-	collagen, type XIX, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-99268200-2	chr5	99268118	99268318	+	769.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15291.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	1.76268769614623	3.21602247650704	1.91731702801544	2.77763796363195	2.2369656687269	1.7632218532209	2.97226995403742	3.2965473068636	0.281319324193216	0.743916348510074	0.998431161219273
Merged-chr10-84387552-3	chr10	84387463	84387663	+	706.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004363, intron 4 of 6)	L2c|LINE|L2	52908.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-19522387-3	chr3	19522283	19522483	+	675.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025489, intron 1 of 4)	intron (NM_025489, intron 1 of 4)	-8864.0	NM_001163537	66326.0	Mm.45615	NM_025489	ENSMUSG00000027606	Dnajc5b	1700008A05Rik	DnaJ heat shock protein family (Hsp40) member C5 beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-22755812-2	chr1	22755712	22755912	+	696.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001012625, intron 1 of 26)	intron (NM_001012625, intron 1 of 26)	50191.0	NM_001012623	116837.0	Mm.60061	NM_053270	ENSMUSG00000041670	Rims1	C030033M19Rik|RIM1|RIM1a|RIM1alpha|Rab3ip1|Rim|Serg1	regulating synaptic membrane exocytosis 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-91139675-4	chr10	91139583	91139783	+	996.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15720.0	NM_133668	18674.0	Mm.298	NM_133668	ENSMUSG00000061904	Slc25a3	5730556H19Rik|PTP|Phc	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-82915153-3	chr11	82915051	82915251	+	703.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178680, intron 5 of 19)	intron (NM_178680, intron 5 of 19)	3898.0	NM_178680	217012.0	Mm.295205	NM_178680	ENSMUSG00000018845	Unc45b	AA445617|Cmya4|D230041A13Rik|Unc45	unc-45 myosin chaperone B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-24100433-4	chr1	24100330	24100530	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026604)	promoter-TSS (NM_026604)	-89.0	NM_026604	68187.0	Mm.87130	NM_026604	ENSMUSG00000026153	Fam135a	4921533L14Rik|AI256732|AI835491	family with sequence similarity 135, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-85000562-2	chr2	85000462	85000662	+	610.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145526, intron 9 of 11)	intron (NM_145526, intron 9 of 11)	12347.0	NM_016914	53856.0	Mm.19943	NM_016914	ENSMUSG00000027072	Prg3	MBP2|MBPH	proteoglycan 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-77281211-4	chr2	77281139	77281339	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175465)	promoter-TSS (NM_175465)	-647.0	NM_175465	228071.0	Mm.27120	NM_175465	ENSMUSG00000042272	Sestd1	1500031J16Rik|A930010O20|Solo/Trio8	SEC14 and spectrin domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-63827181-4	chr5	63827077	63827277	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029554, intron 1 of 3)	intron (NM_029554, intron 1 of 3)	14682.0	NM_029554	76261.0	Mm.38143	NM_029554	ENSMUSG00000060512	0610040J01Rik	AI662686	RIKEN cDNA 0610040J01 gene	protein-coding	5.06275416876191	4.50514873958142	5.63690468969138	4.82698953575852	5.18117495213893	5.46791869103212	5.74398980505412	4.88943273628859	0.324143465455162	0.341228429370277	0.842167861132319
Merged-chr10-67052607-3	chr10	67052530	67052730	+	734.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178606, intron 2 of 7)	intron (NM_178606, intron 2 of 7)	44358.0	NM_001204915	28193.0	Mm.41272	NM_178606	ENSMUSG00000019873	Reep3	D10Ucla1	receptor accessory protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-132114184-4	chr2	132114111	132114311	+	844.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355430, intron 1 of 15)	(CAAAAA)n|Simple_repeat|Simple_repeat	30897.0	NM_001355431	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-21205709-4	chr2	21205619	21205819	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027728)	promoter-TSS (NM_027728)	-5.0	NM_001001297	208967.0	Mm.268841	NM_177588	ENSMUSG00000048550	Thnsl1	AW413632	threonine synthase-like 1 (bacterial)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27553952-2	chr17	27553994	27554194	+	716.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2480.0	NM_001166536	15361.0	Mm.4438	NM_016660	ENSMUSG00000046711	Hmga1	AL023995|Hmga1a|Hmga1b|Hmgi|Hmgiy|Hmgy	high mobility group AT-hook 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-31094947-3	chr2	31094933	31095133	+	743.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355105, intron 4 of 15)	B1_Mus2|SINE|Alu	1467.0	NM_001177650	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128719507-4	chr2	128719421	128719621	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 1 of 18)	intron (NM_008587, intron 1 of 18)	20606.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	5.7045864370439	5.87922854953604	6.10808105728216	5.83125547196282	6.22376754205128	5.75308852758289	6.32432022546833	6.22281299951798	0.294339758611514	0.20956074028745	0.699196263061409
Merged-chr8-83752242-2	chr8	83752142	83752342	+	627.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB3|LINE|L1	-10931.0	NM_001163031	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	1.11351483117813	0.651727760264313	0.825034458061355	1.28403357244124	1.21617517497821	0.653787486173879	0.830599171700015	1.19257470954842	0.014766254692636	0.992113546427946	1
Merged-chr7-44247249-3	chr7	44247136	44247336	+	897.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025880, intron 1 of 5)	intron (NM_025880, intron 1 of 5)	514.0	NM_025880	668661.0	Mm.274492	NM_025880	ENSMUSG00000045411	2410002F23Rik	-	RIKEN cDNA 2410002F23 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-39251097-4	chr18	39250974	39251174	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361073, intron 17 of 21)	intron (NM_001361073, intron 17 of 21)	236171.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-67338864-2	chr17	67338764	67338964	+	624.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	(CAA)n|Simple_repeat|Simple_repeat	15595.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-55100223-4	chr13	55100045	55100245	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293660, intron 1 of 12)	CpG	155.0	NR_121592	20184.0	Mm.259301	NM_011307	ENSMUSG00000025878	Uimc1	9430016E08Rik|D330018D10Rik|D630032M02Rik|RIP110|Rxrip110	ubiquitin interaction motif containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-30948450-1	chr5	30948350	30948550	+	554.0	f1_c57bl6.idr	Intergenic	Intergenic	-1616.0	NR_003522	57742.0	Mm.389615	NM_021304	ENSMUSG00000006638	Abhd1	LABH-1|LABH1	abhydrolase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-53589943-4	chr6	53589792	53589992	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172728, intron 1 of 6)	intron (NM_172728, intron 1 of 6)	16518.0	NM_172728	231991.0	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-101506352-1	chr3	101506252	101506452	+	556.0	f1_c57bl6.idr	Intergenic	Intergenic	98355.0	NM_144900	11928.0	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding	-0.321003765903533	-0.859787231100318	-0.865505697605698	-0.867720313675353	-0.870840978468054	-0.857095856682429	-0.864871666080143	-0.563772805396373	-0.973016328620917	0.753385479874591	1
Merged-chr4-156198063-4	chr4	156197991	156198191	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021604)	promoter-TSS (NM_021604)	-603.0	NM_021604	11603.0	Mm.273098	NM_021604	ENSMUSG00000041936	Agrn	Agrin|nmf380	agrin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-120037098-4	chr6	120037011	120037211	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001199083, exon 1 of 28)	exon (NM_001199083, exon 1 of 28)	1544.0	NM_001185020	232341.0	Mm.333349	NM_198703	ENSMUSG00000045962	Wnk1	6430573H23Rik|EG406236|Hsn2|Prkwnk1|mKIAA0344	WNK lysine deficient protein kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-33392975-3	chr14	33392873	33393073	+	810.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_016700, exon 6 of 12)	exon (NM_016700, exon 6 of 12)	18051.0	NM_001310452	26419.0	Mm.21495	NM_016700	ENSMUSG00000021936	Mapk8	AI849689|JNK|JNK1|Prkm8|SAPK1	mitogen-activated protein kinase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-29382617-2	chr17	29382505	29382705	+	636.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21691.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	0.968506264087334	1.93044009238331	1.2449472038738	2.17566383149091	1.60766494204756	1.81564177317392	1.01786356654478	2.0172673220205	-0.0460501074801246	0.969996678351951	0.998431161219273
Merged-chr6-149355333-1	chr6	149355233	149355433	+	947.0	f0_c57.idr	Intergenic	Intergenic	45919.0	NM_001289662	67246.0	Mm.333515	NM_026054	ENSMUSG00000032712	2810474O19Rik	6720435I21Rik|AA536804|AU020969|GET|Kiaa1551	RIKEN cDNA 2810474O19 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-43737698-3	chr5	43737626	43737826	+	755.866699	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359906, intron 36 of 37)	intron (NM_001359906, intron 36 of 37)	44423.0	NM_001159963	242960.0	Mm.25794	NM_178729	ENSMUSG00000039753	Fbxl5	Fbl4|Fir4	F-box and leucine-rich repeat protein 5	protein-coding	2.95047925501139	3.10181089597134	3.1049880469256	2.33888302832211	3.14933262600851	3.69140197215431	4.19617012005447	3.46551311533394	1.24759332783188	0.0373335740264216	0.274915029359046
Merged-chr2-35447644-2	chr2	35447544	35447744	+	734.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010283, intron 1 of 8)	intron (NM_010283, intron 1 of 8)	13805.0	NM_001308299	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-87830191-4	chr10	87830123	87830323	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1G1|LTR|ERVL-MaLR	-28042.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167991099-2	chr2	167990999	167991199	+	613.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080708, intron 12 of 21)	intron (NM_001080708, intron 12 of 21)	19494.0	NM_001080708	69553.0	Mm.68454	NM_001080708	ENSMUSG00000074577	Ripor3	2310033K02Rik|Fam65c|Gm124	RIPOR family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-145801078-3	chr6	145800981	145801181	+	960.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7302.0	NM_027760	71323.0	Mm.158669	NM_027760	ENSMUSG00000030259	Rassf8	5133400D11Rik|AA815821|AW123240|Hoj1|mHoj-1	Ras association (RalGDS/AF-6) domain family (N-terminal) member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-95823337-2	chr11	95823237	95823437	+	874.3333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1163.0	NM_153104	237928.0	Mm.133075	NM_153104	ENSMUSG00000050860	Phospho1	D11Moh36|Phospo1	phosphatase, orphan 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-88635053-2	chr8	88634927	88635127	+	731.700012	f1_balb.idr|f1_c57bl6.idr	intron (NM_027840, intron 1 of 3)	intron (NM_027840, intron 1 of 3)	1101.0	NM_027840	71607.0	Mm.270607	NM_027840	ENSMUSG00000031662	Snx20	9130017C17Rik	sorting nexin 20	protein-coding	3.21824334403871	3.28405713203415	3.08033004698768	3.73735500195364	2.27852242266942	3.47882239069944	2.89370839441408	1.54335314083333	-1.05451346812891	0.149224218526561	0.600780768615322
Merged-chr1-85770390-2	chr1	85770290	85770490	+	803.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4881.0	NR_108086	77762.0	Mm.434298	NR_108086	ENSMUSG00000100217	9930111H07Rik	-	RIKEN cDNA 9930111H07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-101968105-4	chr5	101968010	101968210	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 5 of 66)	MTD|LTR|ERVL-MaLR	101811.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	5.56622495357927	5.57196675568348	4.92632593956863	4.91755410052517	5.86899155270396	4.61243421507727	4.96165545264875	5.68357999486763	0.119483186958883	0.730953535450418	0.998431161219273
Merged-chr4-154944397-4	chr4	154944285	154944485	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16308.0	NM_178931	230979.0	Mm.215147	NM_178931	ENSMUSG00000042333	Tnfrsf14	Atar|HveA|Hvem|Tnfrs14	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	protein-coding	4.72041526109476	5.60248297322365	5.00119379802035	4.83719000866169	5.25016959622161	4.62923135949744	4.48155030000642	5.1378863610213	-0.182475402304745	0.604686745479948	0.974091242248713
Merged-chr17-67346589-2	chr17	67346489	67346689	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	7870.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150487084-2	chr4	150486984	150487184	+	613.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 7 of 22)	intron (NM_001085492, intron 7 of 22)	165090.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-19896053-4	chr5	19895969	19896169	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170746, intron 2 of 22)	MTD|LTR|ERVL-MaLR	-11449.0	NM_001170745	50791.0	Mm.332231	NM_015823	ENSMUSG00000040003	Magi2	AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705	membrane associated guanylate kinase, WW and PDZ domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5882174-4	chr19	5882062	5882262	+	960.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134154, intron 4 of 5)	intron (NM_134154, intron 4 of 5)	4340.0	NM_001361974	107375.0	Mm.5323	NM_134154	ENSMUSG00000024818	Slc25a45	AW491445	solute carrier family 25, member 45	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-93341884-2	chr4	93341784	93341984	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6373.0	NM_026954	69136.0	Mm.171558	NM_026954	ENSMUSG00000054000	Tusc1	2200001D17Rik|TSG-9	tumor suppressor candidate 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-113706310-2	chr9	113706210	113706410	+	577.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164678, intron 1 of 17)	RSINE1|SINE|B4	1949.0	NM_001164678	18571.0	Mm.29816	NM_011052	ENSMUSG00000032504	Pdcd6ip	AI480591|AW544830|Aip1|Alix|C76364|Eig2|mKIAA1375	programmed cell death 6 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85375004-4	chr12	85374804	85375004	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026775)	promoter-TSS (NM_026775)	-187.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-61111984-2	chr18	61111884	61112084	+	557.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001037859, exon 5 of 22)	exon (NM_001037859, exon 5 of 22)	-5484.0	NR_105949	102466212.0		NR_105949	ENSMUSG00000098389	Mir6983	Gm27496|mmu-mir-6983	microRNA 6983	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-159593021-4	chr2	159592925	159593125	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-354316.0	NR_040498	71081.0	Mm.383491	NR_040498	ENSMUSG00000085198	4933416E03Rik	-	RIKEN cDNA 4933416E03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4283266-4	chr19	4283167	4283367	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026720)	promoter-TSS (NM_026720)	-130.0	NM_026720	68423.0	Mm.23642	NM_026720	ENSMUSG00000005986	Ankrd13d	0710001P18Rik|AI430801	ankyrin repeat domain 13 family, member D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-113382077-2	chr6	113381977	113382177	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026552, intron 3 of 5)	intron (NM_026552, intron 3 of 5)	3964.0	NM_001170486	68089.0	Mm.289306	NM_026552	ENSMUSG00000079426	Arpc4	20kDa|5330419I20Rik|AI327076|p20-Arc	actin related protein 2/3 complex, subunit 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-13287233-2	chr16	13287133	13287333	+	662.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001122667, intron 2 of 16)	RMER19A|LTR|ERVK	22154.0	NM_181860	239719.0	Mm.270643	NM_153588	ENSMUSG00000009569	Mkl2	Gt4-1|MRTF-B|Mrtfb|mKIAA1243	MKL/myocardin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101259914-1	chr15	101259814	101260014	+	543.0	f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-6932.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-120100117-2	chr6	120100017	120100217	+	575.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016718, intron 1 of 3)	intron (NM_016718, intron 1 of 3)	6737.0	NM_016718	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117655534-3	chr11	117655416	117655616	+	835.138916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198022, intron 1 of 21)	CpG	1227.0	NM_198022	217351.0	Mm.40272	NM_198022	ENSMUSG00000025571	Tnrc6c	9930033H14Rik|mKIAA1582	trinucleotide repeat containing 6C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-114998179-2	chr4	114998079	114998279	+	658.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-1939.0	NM_001304559	20460.0	Mm.3988	NM_009185	ENSMUSG00000028718	Stil	Sil	Scl/Tal1 interrupting locus	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-60982381-2	chr8	60982281	60982481	+	896.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_173873, intron 1 of 12)	intron (NM_173873, intron 1 of 12)	930.0	NM_173873	12725.0	Mm.25263	NM_007711	ENSMUSG00000004319	Clcn3	Clc3	chloride channel, voltage-sensitive 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52568225-2	chr13	52568125	52568325	+	859.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M5|LINE|L1	5000.0	NR_046069	100040572.0	Mm.278873	NR_046069		Gm2848	-	predicted gene 2848	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120511033-4	chr8	120510933	120511133	+	940.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198671, intron 1 of 15)	PB1D7|SINE|Alu	22167.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-105122521-2	chr9	105122428	105122628	+	751.666626	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	9277.0	NM_029385	75686.0	Mm.305810	NM_029385	ENSMUSG00000032565	Nudt16	2310041H06Rik|2810047L04Rik|2900006H04Rik|AI851783	nudix (nucleoside diphosphate linked moiety X)-type motif 16	protein-coding	3.1872115040744	3.38826952199961	2.94050135487689	2.85404763654442	4.00930529799237	3.68193596728396	3.71211611374983	3.66974759299985	1.05485324317166	0.0487731726707401	0.321527761375571
Merged-chr8-61643390-4	chr8	61643329	61643529	+	695.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293772, intron 10 of 21)	intron (NM_001293772, intron 10 of 21)	-52260.0	NM_001293774	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	2.27135819601666	2.2852267942897	1.64964084326658	3.06296348066125	2.48938647104456	3.14163334781098	1.66162759372776	2.28948112079489	0.164715856694076	0.851945854087238	0.998431161219273
Merged-chr15-53399307-4	chr15	53399224	53399424	+	786.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-53141.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-102178579-2	chr15	102178479	102178679	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_144942, exon 14 of 15)	exon (NM_144942, exon 14 of 15)	10464.0	NM_001359127	246277.0	Mm.296382	NM_144942	ENSMUSG00000023044	Csad	Csd	cysteine sulfinic acid decarboxylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-3474135-1	chr5	3474035	3474235	+	770.5	f0_balb.idr	intron (NM_009873, intron 5 of 7)	intron (NM_009873, intron 5 of 7)	-69698.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-27804820-4	chr7	27804722	27804922	+	916.6416630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2374.0	NM_027703	71163.0	Mm.440493	NM_027703	ENSMUSG00000030604	Zfp626	4833408D11Rik|4933426I21Rik|7630402I04Rik	zinc finger protein 626	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-80085867-4	chr11	80085760	80085960	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-3540.0	NM_001029856	237877.0	Mm.89551	NM_001029856	ENSMUSG00000017550	Atad5	C130052G03Rik|FRAG1|Gm17	ATPase family, AAA domain containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-80812693-2	chr12	80812593	80812793	+	894.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001242419, intron 1 of 6)	intron (NM_001242419, intron 1 of 6)	22161.0	NM_001242419	217684.0	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-155637522-3	chr2	155637446	155637646	+	776.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019828, intron 16 of 18)	intron (NM_019828, intron 16 of 18)	14666.0	NR_030757	735275.0		NR_030757	ENSMUSG00000076312	Mir499	Mirn499|mir-499|mmu-mir-499	microRNA 499	ncRNA	1.45511216192738	0.931769301964569	1.12904838240999	1.74934015936888	1.06671031368695	1.99228033166045	1.46726977838324	1.4206503030689	0.594000521011562	0.629818556713172	0.981201918729827
Merged-chr4-141864181-1	chr4	141864081	141864281	+	639.0	f1_balb.idr	intron (NM_025994, intron 1 of 3)	intron (NM_025994, intron 1 of 3)	10739.0	NM_025994	27984.0	Mm.395598	NM_025994	ENSMUSG00000040659	Efhd2	2600015J22Rik|AA408606|D4Wsu27e	EF hand domain containing 2	protein-coding	1.26998472643817	0.5547907398234	0.926507027904865	0.533971918849383	0.520832657929346	1.5032214977183	0.545707541476089	1.37443199387653	0.897756022230322	0.594700719883146	0.971009057416876
Merged-chr12-112861008-3	chr12	112860900	112861100	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019925)	promoter-TSS (NM_019925)	-84.0	NM_019925	56696.0	Mm.20455	NM_019925	ENSMUSG00000021298	Gpr132	G2a	G protein-coupled receptor 132	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105518614-7	chr8	105518461	105518661	+	877.1785890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008289)	promoter-TSS (NM_008289)	-185.0	NM_008289	15484.0	Mm.5079	NM_008289	ENSMUSG00000031891	Hsd11b2	11HSD2	hydroxysteroid 11-beta dehydrogenase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-108570776-2	chr3	108570676	108570876	+	783.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025444)	promoter-TSS (NM_025444)	-923.0	NM_025444	99730.0	Mm.24431	NM_025444	ENSMUSG00000048100	Taf13	1810004N01Rik|2010309N11Rik|AI847295|TAFII18	TATA-box binding protein associated factor 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100339283-2	chr11	100339183	100339383	+	886.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	4876.0	NM_010257	14459.0	Mm.4767	NM_010257	ENSMUSG00000017165	Gast	GAS	gastrin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-21331430-3	chr16	21331322	21331522	+	934.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_131983)	TTS (NR_131983)	1934.0	NR_131983	76222.0	Mm.86031	NR_131983		Magef1	6430590I03Rik	melanoma antigen family F, 1	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-143922084-2	chr1	143921982	143922182	+	607.5	f0_balb.idr|f0_c57.idr	Intergenic	B3A|SINE|B2	82067.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124993539-4	chr6	124993422	124993622	+	988.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3198.0	NM_175696	319352.0	Mm.295327	NM_175696	ENSMUSG00000030329	Pianp	AI255183|AU067746|C530028O21Rik|Panp	PILR alpha associated neural protein	protein-coding	1.07896071679066	1.18211134707411	2.22790101360332	1.90872328148141	2.80198103177668	2.73297048807772	1.42573913539908	2.17183984651751	1.68137859391787	0.118477702321415	0.540158551764431
Merged-chr13-6241654-4	chr13	6241567	6241767	+	883.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-306490.0	NM_145131	69617.0	Mm.41933	NM_145131	ENSMUSG00000021193	Pitrm1	2310012C15Rik|AA410010|MP-1|MP1|Ntup1|PreP|mKIAA1104	pitrilysin metallepetidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-30467449-2	chr15	30467349	30467549	+	735.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355502, intron 2 of 21)	intron (NM_001355502, intron 2 of 21)	294856.0	NM_008729	18163.0	Mm.321648	NM_008729	ENSMUSG00000022240	Ctnnd2	Catnd2|Nprap|neurojugin	catenin (cadherin associated protein), delta 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-154703041-4	chr2	154702966	154703166	+	682.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46040.0	NM_029362	75608.0	Mm.262480	NM_029362	ENSMUSG00000038467	Chmp4b	2010012F05Rik|C76846|Snf7-2	charged multivesicular body protein 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-136120874-1	chr4	136120774	136120974	+	584.0	f1_c57bl6.idr	Intergenic	Intergenic	-22948.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	3.76434214128659	1.64291756150857	3.4750198140383	3.9538988083342	3.8380035569958	3.16121816142531	2.51525298088175	2.05479278733638	-0.59192487498855	0.444691888715112	0.912265842646861
Merged-chr10-67690214-4	chr10	67690128	67690328	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	-118269.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-38511410-2	chr15	38511310	38511510	+	663.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001102458, intron 2 of 12)	B1_Mur1|SINE|Alu	7856.0	NM_001301688	54375.0	Mm.250214	NM_018745	ENSMUSG00000037458	Azin1	1700085L02Rik|AZI|Oazi|Oazin	antizyme inhibitor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-23329295-2	chr16	23329195	23329395	+	724.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252505, intron 5 of 7)	intron (NM_001252505, intron 5 of 7)	38825.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106151780-2	chr11	106151680	106151880	+	768.6999509999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_011947, intron 14 of 15)	intron (NM_011947, intron 14 of 15)	8147.0	NM_001356459	67803.0	Mm.21687	NM_172397	ENSMUSG00000040699	Limd2	0610025L06Rik|AI413966	LIM domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88714099-1	chr3	88713999	88714199	+	559.0	f1_balb.idr	Intergenic	Intergenic	-2755.0	NM_001163310	19769.0	Mm.4009	NM_009069	ENSMUSG00000028057	Rit1	RIBB|ROC1|Rit	Ras-like without CAAX 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-64962057-1	chr18	64961957	64962157	+	659.0	f1_balb.idr	intron (NM_001114386, intron 1 of 30)	intron (NM_001114386, intron 1 of 30)	-61470.0	NM_031881	83814.0	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	1.27749064716126	2.91272009523177	1.11128840398205	2.48307335972641	1.03832534856087	2.22194359712161	1.63479194101597	2.93697600765349	-0.0396492362344269	0.972163809108937	0.998431161219273
Merged-chr11-46449036-3	chr11	46448944	46449144	+	649.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5887.0	NM_134250	171285.0	Mm.72168	NM_134250	ENSMUSG00000020399	Havcr2	TIM-3|Tim3|Timd3	hepatitis A virus cellular receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-4086029-1	chr10	4085929	4086129	+	892.0	f0_balb.idr	intron (NM_001170785, intron 21 of 27)	MTEa|LTR|ERVL-MaLR	112954.0	NM_172308	270685.0	Mm.184752	NM_172308	ENSMUSG00000040675	Mthfd1l	2410004L15Rik|AI647056|Fthfsdc1	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-38445133-2	chr18	38445033	38445233	+	923.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355749, intron 2 of 7)	B4A|SINE|B4	26226.0	NM_001355749	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-53313877-4	chr19	53313789	53313989	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360348, intron 1 of 5)	intron (NM_001360348, intron 1 of 5)	2444.0	NM_001360348	17859.0	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-84986731-1	chr13	84986631	84986831	+	575.0	f1_balb.idr	Intergenic	L1Md_F2|LINE|L1	-202654.0	NM_001347587	66671.0	Mm.18474	NM_023243	ENSMUSG00000021548	Ccnh	6330408H09Rik|AI661354|AV102684|AW538719	cyclin H	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-62058281-4	chr9	62058187	62058387	+	941.6749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_033320, exon 3 of 3)	3' UTR (NM_033320, exon 3 of 3)	12319.0	NM_033320	93683.0	Mm.24411	NM_033320	ENSMUSG00000032252	Glce	1110017N23Rik|AI747411|C130034A12Rik|Hsepi	glucuronyl C5-epimerase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-130117342-1	chr7	130117242	130117442	+	662.0	f0_balb.idr	Intergenic	AT_rich|Low_complexity|Low_complexity	149466.0	NM_010207	14183.0	Mm.16340	NM_010207	ENSMUSG00000030849	Fgfr2	AU043015|AW556123|Bek|Fgfr-2|Fgfr-7|Fgfr7|KGFR|KGFRTr|svs	fibroblast growth factor receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-121500916-4	chr5	121500792	121500992	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172125, exon 1 of 1)	exon (NM_172125, exon 1 of 1)	2088.0	NM_172125	280667.0	Mm.444773	NM_172125	ENSMUSG00000062438	Adam1b	Adam1|Ftna	a disintegrin and metallopeptidase domain 1b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-165935092-2	chr1	165934992	165935192	+	804.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198934)	promoter-TSS (NM_198934)	-144.0	NM_198933	18986.0	Mm.245261	NM_011137	ENSMUSG00000026565	Pou2f1	2810482H01Rik|NF-A1|Oct-1|Oct1|Otf-1|Otf1	POU domain, class 2, transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-118559722-4	chr1	118559612	118559812	+	908.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359330, intron 30 of 39)	intron (NM_001359330, intron 30 of 39)	-68233.0	NM_023755	81879.0	Mm.24621	NM_023755	ENSMUSG00000026380	Tfcp2l1	1810030F05Rik|4932442M07Rik|AA575098|Cp2l1|Crtr-1|D930018N21Rik|LBP-9|Tcfcp2l1	transcription factor CP2-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-88190907-4	chr17	88190762	88190962	+	914.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	65350.0	NM_001190356	225058.0	Mm.312053	NM_001190356		Gm4832	EG225058	predicted gene 4832	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-121190609-2	chr5	121190509	121190709	+	547.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011202, intron 1 of 15)	intron (NM_011202, intron 1 of 15)	788.0	NM_001109992	19247.0	Mm.8681	NM_011202	ENSMUSG00000043733	Ptpn11	2700084A17Rik|AW536184|PTP1D|PTP2C|SAP-2|SH-PTP2|SH-PTP3|SHP-2|Shp2|Syp	protein tyrosine phosphatase, non-receptor type 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-157382118-1	chr1	157382018	157382218	+	550.0	f0_balb.idr	intron (NM_177644, intron 1 of 17)	B4A|SINE|B4	-30234.0	NR_027984	69953.0	Mm.286863	NM_027274	ENSMUSG00000049881	2810025M15Rik	AI429618	RIKEN cDNA 2810025M15 gene	ncRNA	1.2849095551285	1.8732618467849	2.10042687823256	0.959779710655964	1.43464171586751	1.76030028479104	1.81938913413248	0.962442869992292	-0.321867278193369	0.794479230176464	0.998431161219273
Merged-chr2-73428463-5	chr2	73428443	73428643	+	799.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25346.0	NM_001289722	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-21086461-3	chr1	21086365	21086565	+	678.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7240.0	NM_177409	170829.0	Mm.185680	NM_177409	ENSMUSG00000041779	Tram2	C330003D03Rik	translocating chain-associating membrane protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-12424182-4	chr4	12424081	12424281	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-252166.0	NM_026558	68099.0	Mm.25340	NM_026558	ENSMUSG00000028218	Fam92a	6720467C03Rik|Fam92a1	family with sequence similarity 92, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191574513-2	chr1	191574413	191574613	+	897.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001305233, intron 1 of 15)	intron (NM_001305233, intron 1 of 15)	1031.0	NM_029766	76843.0	Mm.189102	NM_029766	ENSMUSG00000037474	Dtl	2810047L02Rik|5730564G15Rik|L2dtl|Ramp	denticleless E3 ubiquitin protein ligase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140387515-2	chr5	140387415	140387615	+	872.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172277, intron 1 of 10)	(GGA)n|Simple_repeat|Simple_repeat	1793.0	NM_172277	231834.0	Mm.27098	NM_172277	ENSMUSG00000029560	Snx8	B130023O14Rik	sorting nexin 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-38602164-3	chr2	38602065	38602265	+	957.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011187, intron 6 of 7)	intron (NM_011187, intron 6 of 7)	41741.0	NM_011187	19177.0	Mm.389251	NM_011187	ENSMUSG00000026750	Psmb7	AU020723|MC14	proteasome (prosome, macropain) subunit, beta type 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-36572156-4	chr3	36572051	36572251	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_027810)	TTS (NM_027810)	887.0	NM_009828	12428.0	Mm.4189	NM_009828	ENSMUSG00000027715	Ccna2	AA408589|Ccn-1|Ccn1|Ccna|CycA2|Cyca	cyclin A2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-20812090-4	chr5	20811986	20812186	+	877.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172992, intron 3 of 17)	intron (NM_172992, intron 3 of 17)	70038.0	NM_172992	68770.0	Mm.86410	NM_172992	ENSMUSG00000039987	Phtf2	1110054G21Rik|9530062N20Rik|AI447096|C77923	putative homeodomain transcription factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-30530306-4	chr18	30530199	30530399	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	257434.0	NR_151699	225326.0	Mm.194127	NM_181414	ENSMUSG00000033628	Pik3c3	5330434F23Rik|Vps34	phosphatidylinositol 3-kinase catalytic subunit type 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-148075541-4	chr4	148075432	148075632	+	931.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12532.0	NM_009642	11610.0	Mm.46247	NM_009642	ENSMUSG00000029007	Agtrap	3300002E14Rik|AT1R|Atrap|D4Wsu124e	angiotensin II, type I receptor-associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-24505299-4	chr16	24505212	24505412	+	766.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 3 of 12)	intron (NM_178665, intron 3 of 12)	-24002.0	NR_038091	624582.0	Mm.439775	NR_038091		Morf4l1-ps1	A730098P11Rik	mortality factor 4 like 1, pseudogene 1	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-31033953-4	chr7	31033852	31034052	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001287217, intron 8 of 8)	intron (NM_001287217, intron 8 of 8)	6365.0	NR_106017	102465635.0		NR_106017	ENSMUSG00000098783	Mir7050	Gm27578|mmu-mir-7050	microRNA 7050	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-120019463-3	chr6	120019361	120019561	+	736.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198703, intron 1 of 27)	polypurine|Low_complexity|Low_complexity	14850.0	NR_030487	735290.0		NR_030487	ENSMUSG00000076217	Mir706	Mirn706|mir-706|mmu-mir-706	microRNA 706	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102379936-2	chr12	102379836	102380036	+	829.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_177620, intron 7 of 9)	intron (NM_177620, intron 7 of 9)	59877.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-121586836-4	chr10	121586730	121586930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019786)	promoter-TSS (NM_019786)	-36.0	NM_019786	56480.0	Mm.34580	NM_019786	ENSMUSG00000020115	Tbk1	1200008B05Rik|AI462036|AW048562	TANK-binding kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124621626-4	chr5	124621525	124621725	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026486, intron 13 of 18)	L1MB5|LINE|L1	-7427.0	NM_011596	21871.0	Mm.1158	NM_011596	ENSMUSG00000038023	Atp6v0a2	8430408C20Rik|AI385560|ATP6a2|AW489264|Atp6n1d|Atp6n2|C76904|ISF|J6B7|SHIF|Stv1|TJ6M|TJ6s|Tj6|V-ATPase 116 kDa|V-ATPase a2	ATPase, H+ transporting, lysosomal V0 subunit A2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5849662-4	chr17	5849515	5849715	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025664, intron 1 of 17)	intron (NM_025664, intron 1 of 17)	8235.0	NM_025664	66616.0	Mm.89515	NM_025664	ENSMUSG00000002365	Snx9	2700073N08Rik|SDP1|SH3PX1	sorting nexin 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-109239493-4	chr13	109239381	109239581	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011056, intron 3 of 16)	intron (NM_011056, intron 3 of 16)	-85263.0	NR_030644	100124489.0		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-45330475-4	chr8	45330395	45330595	+	826.395813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133969, intron 1 of 10)	intron (NM_133969, intron 1 of 10)	2701.0	NM_133969	102294.0	Mm.245297	NM_133969	ENSMUSG00000079057	Cyp4v3	AU043077|AW111961|Cyp4v2	cytochrome P450, family 4, subfamily v, polypeptide 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-5020270-4	chr1	5020214	5020414	+	778.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021374)	promoter-TSS (NM_021374)	-775.0	NM_021374	58175.0	Mm.103771	NM_021374	ENSMUSG00000002459	Rgs20	2900073E09Rik|Rgsz1	regulator of G-protein signaling 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-80000251-2	chr14	80000151	80000351	+	616.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001351947)	promoter-TSS (NM_001351947)	-51.0	NM_001351947	380924.0	Mm.26456	NM_001030294	ENSMUSG00000022026	Olfm4	GC1|GW112|Gm296|Gm913|OlfD|pPD4	olfactomedin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167504767-2	chr2	167504667	167504867	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153838, intron 1 of 4)	intron (NR_153838, intron 1 of 4)	1324.0	NM_001360930	81018.0	Mm.22225	NM_030743	ENSMUSG00000006418	Rnf114	1110008J21Rik|AI225886|AW549494|Zfp228|Zfp313|Znf228	ring finger protein 114	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-128776992-3	chr4	128776869	128777069	+	866.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081098, intron 8 of 8)	intron (NM_001081098, intron 8 of 8)	17711.0	NM_001009819	215493.0	Mm.300900	NM_001009819	ENSMUSG00000028794	A3galt2	Gm433|iGb3|iGb3S	alpha 1,3-galactosyltransferase 2 (isoglobotriaosylceramide synthase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-53590626-2	chr6	53590526	53590726	+	791.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172728, intron 1 of 6)	intron (NM_172728, intron 1 of 6)	17252.0	NM_172728	231991.0	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-68367231-2	chr15	68367131	68367331	+	808.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-25942.0	NR_029718	387228.0		NR_029718	ENSMUSG00000065437	Mir30d	Mirn30d|mir-30d|mmu-mir-30d	microRNA 30d	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-88574177-5	chr10	88574077	88574277	+	987.4466550000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252372, intron 2 of 28)	intron (NM_001252372, intron 2 of 28)	30975.0	NM_001252372	109272.0	Mm.147208	NM_175418	ENSMUSG00000020061	Mybpc1	8030451F13Rik	myosin binding protein C, slow-type	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91840364-4	chr16	91840305	91840505	+	863.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110275, intron 18 of 28)	intron (NM_001110275, intron 18 of 28)	91225.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-147728127-2	chr3	147728027	147728227	+	581.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	HERVL40-int|LTR|ERVL	875760.0	NM_001302957	70892.0	Mm.187793	NM_027594	ENSMUSG00000036745	Ttll7	1110049N09Rik|4921517B04Rik|C630030B20|mTTLL7	tubulin tyrosine ligase-like family, member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75487767-2	chr11	75487667	75487867	+	978.6666869999999	f1_balb.idr|f1_c57bl6.idr	exon (NM_138659, exon 2 of 42)	exon (NM_138659, exon 2 of 42)	990.0	NM_138659	192159.0	Mm.3757	NM_138659	ENSMUSG00000020850	Prpf8	AU019467|D11Bwg0410e|DBF3/PRP8|Prp8|Sfprp8l	pre-mRNA processing factor 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139433027-2	chr5	139432927	139433127	+	737.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028469, intron 2 of 4)	intron (NM_028469, intron 2 of 4)	9848.0	NM_029771	76854.0	Mm.389706	NM_029771	ENSMUSG00000053647	Gper1	6330420K13Rik|CMKRL2|Ceprl|FEG-1|GPCR-Br|Gper|Gpr30	G protein-coupled estrogen receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-136364163-3	chr4	136364066	136364266	+	601.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52568.0	NM_001355182	74326.0	Mm.31051	NM_028871	ENSMUSG00000066037	Hnrnpr	2610003J05Rik|2610528B01Rik|Hnrpr	heterogeneous nuclear ribonucleoprotein R	protein-coding	2.2480149171253	1.3146763805861	2.44523740618247	1.25447002373052	2.59629368917135	2.01075967894244	2.89238903631106	2.28056323611922	1.26661038159338	0.200044110197536	0.683821745604712
Merged-chr19-29488602-4	chr19	29488517	29488717	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33370.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-125391778-4	chr5	125391665	125391865	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1748.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140106645-2	chr5	140106545	140106745	+	568.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359025, intron 14 of 17)	RMER4B|LTR|ERVK	68273.0	NM_001359027	17120.0	Mm.27250	NM_010752	ENSMUSG00000029554	Mad1l1	AI173502|AW550425|Mad1	MAD1 mitotic arrest deficient 1-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-80225060-3	chr18	80224987	80225187	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_025299, exon 4 of 4)	3' UTR (NM_025299, exon 4 of 4)	18220.0	NM_001042408	27366.0	Mm.172411	NM_025299	ENSMUSG00000057130	Txnl4a	D18Wsu98e|Dim1|Txnl4|U5-15kD|U5-15kDa	thioredoxin-like 4A	protein-coding	1.55195113811235	1.8912072644564	1.68251831954523	1.07100044423555	2.30666148102536	2.03809675440451	2.18117263823322	1.07422368077004	1.16313534116808	0.308236744721988	0.809239488659609
Merged-chr3-105849539-1	chr3	105849439	105849639	+	651.5	f0_balb.idr	Intergenic	Intergenic	-21319.0	NM_027025	69296.0	Mm.235024	NM_027025	ENSMUSG00000000562	Tmigd3	1700001d09rik|4930578J19Rik|Tg(H2-K-CALR*)del52Shmd	transmembrane and immunoglobulin domain containing 3	protein-coding	0.645804133199795	0.49189687591303	0.477055422833816	1.66126327654816	0.652529877802395	0.495185891780122	0.723137896793456	1.88733072214294	0.528508264266074	0.741057017740585	0.998431161219273
Merged-chr8-111636479-3	chr8	111636380	111636580	+	858.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE-int|LTR|ERVL-MaLR	-6158.0	NM_027570	52815.0	Mm.27589	NM_027570	ENSMUSG00000031958	Ldhd	4733401P21Rik|D8Bwg1320e	lactate dehydrogenase D	protein-coding	-1.18841869531329	-1.1637457952197	-1.17455139950191	-1.18342744458708	-1.18795839538227	-0.821361204236215	-1.17210524754452	-0.874493037230385	2.58770162560591	0.425927335248365	1
Merged-chr4-45436829-3	chr4	45436735	45436935	+	819.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033306, intron 5 of 5)	intron (NM_001033306, intron 5 of 5)	-28069.0	NM_001009949	230125.0	Mm.260210	NM_001009949	ENSMUSG00000045973	Slc25a51	9130208E07Rik|D130005A03Rik|Gm138|Mcart1	solute carrier family 25, member 51	protein-coding	0.73108285588874	0.407817479745358	0.817020765407463	0.398003489293222	0.636663948975153	0.409077992893091	1.01745991631638	0.677221173480478	0.68513643043873	0.694512155750775	1
Merged-chr8-126587973-4	chr8	126587847	126588047	+	877.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001164598)	TTS (NM_001164598)	5489.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-94527616-2	chr16	94527516	94527716	+	880.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007834)	promoter-TSS (NM_007834)	-987.0	NM_007834	13185.0	Mm.7472	NM_007834	ENSMUSG00000022898	Dscr3	AW538125|Dcra	DSCR3 arrestin fold containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-149409093-4	chr6	149409014	149409214	+	949.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_009753, exon 1 of 9)	5' UTR (NM_009753, exon 1 of 9)	130.0	NM_009753	12121.0	Mm.177181	NM_009753	ENSMUSG00000003452	Bicd1	B830009D06Rik|bic-D 1	BICD cargo adaptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-95512697-2	chr9	95512615	95512815	+	654.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001114977)	promoter-TSS (NM_001114977)	-719.0	NM_001357974	67958.0	Mm.292742	NM_026476	ENSMUSG00000032407	U2surp	2610101N10Rik|AU023006|Sr140	U2 snRNP-associated SURP domain containing	protein-coding	-2.18233058068552	-2.15536956715525	-2.16352280018114	-2.04193253143548	-2.18043796738662	-2.15360272754651	-2.16167708693786	-2.16902129354933	-0.683654500252594	0.846597994014493	1
Merged-chr2-103547332-3	chr2	103547232	103547432	+	919.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18978.0	NM_178890	99382.0	Mm.35850	NM_178890	ENSMUSG00000032724	Abtb2	AW539457|BPOZ-2	ankyrin repeat and BTB (POZ) domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-130422843-2	chr2	130422743	130422943	+	740.833374	f1_balb.idr|f1_c57bl6.idr	exon (NM_001114541, exon 3 of 8)	exon (NM_001114541, exon 3 of 8)	1445.0	NM_178762	319513.0	Mm.482539	NM_178762	ENSMUSG00000037773	Pced1a	A930025D01Rik|AI480484|Fam113a	PC-esterase domain containing 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-36933651-2	chr16	36933551	36933751	+	588.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_030035)	TTS (NM_030035)	-1332.0	NM_008225	15163.0	Mm.4091	NM_008225	ENSMUSG00000022831	Hcls1	AW213261|HS1	hematopoietic cell specific Lyn substrate 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-125482558-3	chr7	125482508	125482708	+	752.194458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360659, intron 2 of 7)	MER21C|LTR|ERVL	8934.0	NM_001360659	67711.0	Mm.4467	NM_026330	ENSMUSG00000030750	Nsmce1	2510027N19Rik	NSE1 homolog, SMC5-SMC6 complex component	protein-coding	0.0447209191409653	-0.502986937795284	0.0619071803988813	-0.509752647701668	-0.513909507295025	-0.502125048715181	-0.505965465392625	-0.509238383884568	-3.46079140669065	0.204306894633763	1
Merged-chr13-101538276-4	chr13	101538168	101538368	+	881.56665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-140688.0	NR_046187	78136.0	Mm.399065	NR_046187		4922502H24Rik	-	RIKEN cDNA 4922502H24 gene	ncRNA	1.30243959036232	1.02041358113119	1.55555533805495	1.94825776764357	1.67330799068376	1.02442025782621	2.02709334442648	1.76284454735336	0.531074227542733	0.661335273247178	0.990963966817159
Merged-chr6-106443396-3	chr6	106443357	106443557	+	781.044434	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109749, intron 8 of 25)	intron (NM_001109749, intron 8 of 25)	305580.0	NM_008370	16192.0	Mm.3448	NM_008370	ENSMUSG00000005364	Il5ra	CD125|CDw125|Il5r	interleukin 5 receptor, alpha	protein-coding	0.381806089957965	0.922416862645044	0.398551108868023	0.392277222762954	0.788860161726355	0.40846677854277	1.00648209388138	1.15169337235356	1.90998390371146	0.296098747047612	1
Merged-chr8-41443611-1	chr8	41443511	41443711	+	579.0	f1_balb.idr	Intergenic	Intergenic	-26493.0	NM_013522	14300.0	Mm.217312	NM_013522	ENSMUSG00000031590	Frg1	-	FSHD region gene 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5041386-4	chr19	5041326	5041526	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134155)	promoter-TSS (NM_134155)	72.0	NM_134155	107392.0	Mm.29628	NM_134155	ENSMUSG00000080268	Brms1	AV003220|AW554636	breast cancer metastasis-suppressor 1	protein-coding	3.60224482745623	3.29491825298676	4.10502386623347	2.98283122231248	3.05025989758527	3.31933278149138	3.57395035264598	3.74362292013665	-0.184738041783593	0.741729100556014	0.998431161219273
Merged-chr16-91404120-2	chr16	91404020	91404220	+	741.333374	f1_balb.idr|f1_c57bl6.idr	exon (NM_010509, exon 9 of 9)	exon (NM_010509, exon 9 of 9)	-2115.0	NM_008349	16155.0	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-138841792-1	chr1	138841692	138841892	+	635.0	f0_balb.idr	intron (NM_001025565, intron 1 of 4)	CpG	652.0	NM_001042577	16876.0	Mm.250732	NM_010714	ENSMUSG00000019230	Lhx9	3110009O07Rik|BB104635|LH2B	LIM homeobox protein 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-38944621-3	chr18	38944544	38944744	+	782.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033789, intron 4 of 4)	intron (NM_001033789, intron 4 of 4)	-25945.0	NM_010197	14164.0	Mm.241282	NM_010197	ENSMUSG00000036585	Fgf1	Dffrx|Fam|Fgf-1|Fgfa	fibroblast growth factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-145036445-2	chr4	145036345	145036545	+	548.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001276465, intron 65 of 69)	intron (NM_001276465, intron 65 of 69)	143308.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-38418166-4	chr18	38418065	38418265	+	824.858337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022996)	promoter-TSS (NM_022996)	-742.0	NM_022996	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-27230219-4	chr14	27230091	27230291	+	793.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289686, intron 3 of 12)	MLT1N2|LTR|ERVL-MaLR	-7819.0	NM_027871	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-63164786-3	chr10	63164679	63164879	+	910.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_182992, intron 4 of 19)	intron (NM_182992, intron 4 of 19)	39173.0	NM_182992	68802.0	Mm.259767	NM_182992	ENSMUSG00000020067	Mypn	1110056A04Rik|9830112J03|AI853556|mKIAA4170	myopalladin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-59821713-4	chr4	59821610	59821810	+	909.474976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172468, intron 1 of 8)	L1MA9|LINE|L1	16060.0	NM_172468	209131.0	Mm.259705	NM_172468	ENSMUSG00000028385	Snx30	4732481H14Rik|C030041J06Rik	sorting nexin family member 30	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91270609-2	chr2	91270509	91270709	+	857.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023854, intron 10 of 15)	intron (NM_023854, intron 10 of 15)	5494.0	NM_023854	77038.0	Mm.43636	NM_023854	ENSMUSG00000027255	Arfgap2	2310032E02Rik|Zfp289	ADP-ribosylation factor GTPase activating protein 2	protein-coding	0.651002381760535	1.32587590514101	0.686183598182723	1.9234931564508	0.654363401062629	1.61663539489733	0.689838817892322	1.59442407248773	-0.142488828804498	0.927623343716041	0.998431161219273
Merged-chr5-5336719-1	chr5	5336619	5336819	+	631.0	f0_c57.idr	intron (NM_011074, intron 2 of 14)	L1MB8|LINE|L1	43532.0	NM_011074	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	2.24660016611098	3.58365647921304	2.89489730972739	1.88931369684743	1.59778148863438	2.9200256307138	2.59742426944381	2.73143145903052	-0.517224597628545	0.535655475912293	0.953153213366971
Merged-chr2-167898374-2	chr2	167898274	167898474	+	691.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33953.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-25406182-4	chr15	25406064	25406264	+	877.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027395, intron 1 of 1)	intron (NM_027395, intron 1 of 1)	7600.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41323979-4	chr19	41323867	41324067	+	940.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 7 of 16)	MIR|SINE|MIR	-59963.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70890871-2	chr11	70890771	70890971	+	757.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291142, intron 4 of 16)	RLTR30D2_MM|LTR|ERV1	46110.0	NM_001291142	54189.0	Mm.7087	NM_019400	ENSMUSG00000020817	Rabep1	Rab5ep|rabaptin-5|rabaptin-5alpha	rabaptin, RAB GTPase binding effector protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81638247-2	chr10	81638147	81638347	+	824.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027480, intron 7 of 19)	intron (NM_027480, intron 7 of 19)	9707.0	NM_027480	70615.0	Mm.304382	NM_027480	ENSMUSG00000054708	Ankrd24	4631433D01Rik|5730519E19Rik|D10Bur2e	ankyrin repeat domain 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-77821511-3	chr18	77821410	77821610	+	616.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013831, intron 1 of 14)	intron (NM_013831, intron 1 of 14)	-25120.0	NR_152167	619308.0	Mm.490456	NM_001033812		F830208F22Rik	-	RIKEN cDNA F830208F22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41368392-2	chr19	41368292	41368492	+	595.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 2 of 16)	B3A|SINE|B2	16678.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	0.47807739704212	1.56444988466259	0.303736935917164	0.293057625386064	0.484606207024618	1.58232419326605	0.306745905610478	0.294940926908025	0.0396778354811298	0.982105831817417	0.998431161219273
Merged-chr7-27331006-4	chr7	27330917	27331117	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175641, intron 4 of 32)	CpG	2631.0	NM_001113549	108075.0	Mm.272251	NM_175641	ENSMUSG00000040488	Ltbp4	2310046A13Rik	latent transforming growth factor beta binding protein 4	protein-coding	1.37746481219796	1.26395433464363	2.22887746857682	1.00426196507678	1.39065379551431	1.44375899628799	0.806900018587138	0.792008075644453	-1.46192384632503	0.270718892123057	0.77396789539931
Merged-chr1-36508414-4	chr1	36508325	36508525	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_033570, exon 7 of 7)	3' UTR (NM_033570, exon 7 of 7)	-3442.0	NM_001331209	94218.0	Mm.256323	NM_053186	ENSMUSG00000001138	Cnnm3	Acdp3|Clp3|mACDP3	cyclin M3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56251197-4	chr17	56251025	56251225	+	910.8511960000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CCCCCA)n|Simple_repeat|Simple_repeat	-5668.0	NM_010192	14154.0	Mm.290813	NM_010192	ENSMUSG00000043683	Fem1a	AW611390|Fem1aa	feminization 1 homolog a (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-61056575-2	chr18	61056475	61056675	+	632.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008809, intron 1 of 22)	intron (NM_008809, intron 1 of 22)	11425.0	NM_008809	18596.0	Mm.4146	NM_008809	ENSMUSG00000024620	Pdgfrb	AI528809|CD140b|PDGFR-1|Pdgfr	platelet derived growth factor receptor, beta polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117294631-2	chr8	117294501	117294701	+	823.916687	f0_balb.idr|f0_c57.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	37582.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47630349-2	chr17	47630249	47630449	+	802.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198421)	promoter-TSS (NM_198421)	-341.0	NM_198421	224836.0	Mm.59393	NM_198421	ENSMUSG00000090115	Usp49	C330046L10Rik|Gm545	ubiquitin specific peptidase 49	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-86171361-2	chr15	86171261	86171461	+	857.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145475, intron 1 of 12)	B4A|SINE|B4	-14367.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-114916068-1	chr6	114915968	114916168	+	596.0	f0_balb.idr	intron (NM_001356371, intron 2 of 5)	intron (NM_001356371, intron 2 of 5)	5753.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-110857058-4	chr9	110856948	110857148	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146227)	promoter-TSS (NM_146227)	-919.0	NM_146227	235631.0	Mm.102265	NM_146227	ENSMUSG00000048752	Prss50	79H19C|Tsp50	protease, serine 50	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-147506964-2	chr5	147506864	147507064	+	616.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359433, intron 6 of 19)	intron (NM_001359433, intron 6 of 19)	76808.0	NM_028291	72587.0	Mm.320469	NM_028291	ENSMUSG00000029647	Pan3	2700050F09Rik|A430027N15Rik|AU014670	PAN3 poly(A) specific ribonuclease subunit	protein-coding	-1.13129152895393	-0.760314410582534	-1.11939102144509	-1.12796902636669	-1.1307976245896	-0.753160406462703	-1.11683883442949	-1.12699414366937	0.0387695613834025	0.99058038935327	1
Merged-chr10-22003002-2	chr10	22002902	22003102	+	685.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8336.0	NM_011361	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180268809-4	chr1	180268715	180268915	+	991.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12515.0	NM_001128605	19165.0	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-112950988-4	chr5	112950896	112951096	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285806, intron 9 of 20)	intron (NM_001285806, intron 9 of 20)	-54634.0	NM_028901	74376.0	Mm.441903	NM_028901	ENSMUSG00000072720	Myo18b	4932408L24Rik|4933411E19Rik|Gm448	myosin XVIIIb	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-87365347-4	chr3	87365245	87365445	+	751.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009690, intron 2 of 5)	intron (NM_009690, intron 2 of 5)	7464.0	NM_009690	11801.0	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	-0.546788269889671	0.101514345566832	-0.538384471439815	-0.541540539039748	-0.546006965485395	-0.0132890237707241	-0.537482935337208	-0.5409889094789	-0.385487687419026	0.889913942124054	1
Merged-chr15-102109314-3	chr15	102109207	102109407	+	790.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355636, intron 11 of 28)	intron (NM_001355636, intron 11 of 28)	6373.0	NM_153533	209039.0	Mm.29389	NM_153533	ENSMUSG00000037003	Tns2	C1-ten|Tenc1|nep|nph	tensin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32289722-2	chr2	32289622	32289822	+	751.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080968, intron 1 of 25)	B3|SINE|B2	1469.0	NM_001080968	99412.0	Mm.106376	NM_133852	ENSMUSG00000002546	Golga2	AW555139|GM130|mKIAA4150	golgi autoantigen, golgin subfamily a, 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67581739-2	chr10	67581639	67581839	+	764.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9780.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-125475301-2	chr5	125475201	125475401	+	610.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030210)	promoter-TSS (NM_030210)	-572.0	NM_030210	78894.0	Mm.431573	NM_030210	ENSMUSG00000029482	Aacs	2210408B16Rik|SUR5	acetoacetyl-CoA synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-38116222-4	chr3	38116131	38116331	+	923.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	91888.0	NR_040541	71342.0	Mm.410782	NR_040541	ENSMUSG00000106002	5430434I15Rik	-	RIKEN cDNA 5430434I15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-120055644-4	chr1	120055562	120055762	+	978.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001012322, intron 11 of 13)	intron (NM_001012322, intron 11 of 13)	18118.0	NM_019432	170706.0	Mm.24750	NM_019432	ENSMUSG00000050777	Tmem37	AI173373|AW540203|Pr|Pr1	transmembrane protein 37	protein-coding	0.66120415467204	0.693535473946092	1.49669456115424	1.24992903761435	0.823541530218711	1.08222124277257	1.18335499233189	1.14169972625684	-0.108796387765075	0.940636567371983	0.998431161219273
Merged-chr3-142528604-2	chr3	142528504	142528704	+	726.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1732.0	NM_001083312	229900.0	Mm.45740	NM_145545	ENSMUSG00000040253	Gbp7	9830147J24Rik	guanylate binding protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134454247-1	chr6	134454147	134454347	+	558.0	f0_balb.idr	intron (NM_008514, intron 21 of 22)	intron (NM_008514, intron 21 of 22)	39819.0	NM_001355686	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	2.32169356610629	2.14228539922366	1.91979958150428	1.26693380429102	2.57316326667497	2.72418450656004	1.55212425203706	2.36779432421919	0.959946910130538	0.319996468980971	0.822475928627612
Merged-chr7-80038714-2	chr7	80038614	80038814	+	731.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175433, intron 1 of 4)	intron (NM_175433, intron 1 of 4)	12486.0	NM_175433	209225.0	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124769515-4	chr6	124769411	124769611	+	872.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001302555)	TTS (NM_001302555)	162.0	NM_001302642	13807.0	Mm.3913	NM_013509	ENSMUSG00000004267	Eno2	AI837106|D6Ertd375e|Eno-2|NSE	enolase 2, gamma neuronal	protein-coding	0.77767422846201	0.099940069743864	0.0898318597160882	1.49612389750582	0.263671622967709	0.102189791866986	0.092079626537083	0.0832822641929797	-3.73982356395516	0.0631870652229605	1
Merged-chr10-78577111-2	chr10	78577011	78577211	+	606.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_173751, exon 5 of 16)	exon (NM_173751, exon 5 of 16)	2120.0	NM_001359303	216136.0	Mm.2644	NM_173751	ENSMUSG00000032763	Ilvbl	5830463I21|AI415009	ilvB (bacterial acetolactate synthase)-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-60710807-1	chr13	60710707	60710907	+	568.333313	f1_c57bl6.idr	intron (NM_134062, intron 3 of 26)	intron (NM_134062, intron 3 of 26)	75557.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	0.0589138358380725	-0.228573033056822	0.865124537045142	-0.0502325676637337	-0.246471557624753	-0.227183925583436	-0.233398945492786	-0.238748501629964	-4.01073273116136	0.0734037465707483	1
Merged-chr3-9706697-1	chr3	9706597	9706797	+	544.0	f1_c57bl6.idr	intron (NM_053182, intron 2 of 7)	intron (NM_053182, intron 2 of 7)	-96612.0	NM_133218	170753.0	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-58576171-5	chr18	58576076	58576276	+	897.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081072, intron 2 of 9)	intron (NM_001081072, intron 2 of 9)	19936.0	NM_001081072	225579.0	Mm.258517	NM_001081072	ENSMUSG00000024600	Slc27a6	4732438L20Rik|FACVL2|FATP6|VLCS-H1	solute carrier family 27 (fatty acid transporter), member 6	protein-coding	1.50232606503388	1.52448504019443	1.65712638560848	0.920406968520493	1.66887994658275	2.06721438272456	3.29357724850702	0.925125276884389	2.11712426801086	0.064313611112983	0.378707878604745
Merged-chr13-107797009-3	chr13	107796929	107797129	+	742.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 2 of 14)	MTD|LTR|ERVL-MaLR	93035.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-119352994-2	chr8	119352894	119353094	+	596.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8456.0	NM_024219	68196.0	Mm.358714	NM_024219	ENSMUSG00000031839	Hsbp1	0610007A03Rik|AA408769|Hsp25	heat shock factor binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-24364992-4	chr7	24364893	24365093	+	908.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5270.0	NM_001163510	16534.0	Mm.9911	NM_008433	ENSMUSG00000054342	Kcnn4	IK1|IKCA1|KCA4|KCa3.1|SK4|SKCas|mIKCa1	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32449004-2	chr2	32448904	32449104	+	735.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146118, intron 1 of 10)	B1_Mur2|SINE|Alu	-1453.0	NM_194335	71254.0	Mm.102341	NM_194335	ENSMUSG00000039164	Naif1	2310007O20Rik|4933440H19Rik	nuclear apoptosis inducing factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85472254-4	chr12	85472152	85472352	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1638.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-147587317-2	chr4	147587217	147587417	+	809.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34040.0	NM_001014397	433804.0	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154	zinc finger protein 985	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-112631012-3	chr12	112630919	112631119	+	952.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007421, intron 2 of 12)	MTD|LTR|ERVL-MaLR	10972.0	NM_007421	11565.0	Mm.3440	NM_007421	ENSMUSG00000011148	Adssl1	AI528595|Adss|Adss1	adenylosuccinate synthetase like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-110646134-2	chr9	110646034	110646234	+	873.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183276, intron 1 of 53)	intron (NM_183276, intron 1 of 53)	8027.0	NM_183276	235627.0	Mm.335481	NM_183276	ENSMUSG00000056724	Nbeal2	1110014F23Rik|BC042396|mKIAA0540	neurobeachin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-45632897-4	chr14	45632792	45632992	+	842.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176845, intron 1 of 12)	MTD|LTR|ERVL-MaLR	25161.0	NR_039593	100628600.0		NR_039593	ENSMUSG00000093167	Mir5131	mmu-mir-5131|mu-mir-5131	microRNA 5131	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-84689147-2	chr18	84689047	84689247	+	819.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MURVY-LTR|LTR|ERV1	-3445.0	NM_023149	66054.0	Mm.29646	NM_023149	ENSMUSG00000024644	Cndp2	0610010E05Rik|C76600|Cn2|Dip-2|Pep-1|Pep1	CNDP dipeptidase 2 (metallopeptidase M20 family)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120565446-2	chr8	120565346	120565546	+	746.900024	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145896, intron 3 of 15)	intron (NM_001145896, intron 3 of 15)	23629.0	NM_178856	272551.0	Mm.275910	NM_178856	ENSMUSG00000031821	Gins2	2210013I18Rik|4833427B12Rik|AI323585|Pfs2	GINS complex subunit 2 (Psf2 homolog)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-28832281-4	chr6	28832193	28832393	+	760.78125	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138682)	promoter-TSS (NM_138682)	-546.0	NM_138682	192198.0	Mm.443660	NM_138682	ENSMUSG00000049939	Lrrc4	MBAG1|NGL-2|NGL2|NLG-2|Nag14	leucine rich repeat containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-44078839-4	chr17	44078741	44078941	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001329619)	promoter-TSS (NM_001329619)	39.0	NM_001329619	83965.0	Mm.30145	NM_032003	ENSMUSG00000023960	Enpp5	AW061004|D17Abb1e|E-NPP 5	ectonucleotide pyrophosphatase/phosphodiesterase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-106370087-3	chr9	106369929	106370129	+	856.711121	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153459, intron 1 of 2)	intron (NM_153459, intron 1 of 2)	1397.0	NM_153459	235584.0	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	1.7195370567631	2.08080483047059	2.47514983546493	1.28374107879832	0.823222701284499	0.895392507519888	0.872871202718436	1.45740505336841	-3.26196583102702	0.0155360734896348	0.148883234607539
Merged-chr2-174109892-3	chr2	174109804	174110004	+	973.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_213733)	promoter-TSS (NM_213733)	-447.0	NM_213733	228961.0	Mm.295629	NM_213733	ENSMUSG00000039263	Npepl1	BC023239|C85514|mKIAA1974	aminopeptidase-like 1	protein-coding	1.9865930083819	1.54022122797184	2.17673002317888	2.86510915085755	1.18778896075071	1.55234951759791	1.28372500322632	0.996560149668582	-2.97354833211048	0.00969236008257073	0.106556752844243
Merged-chr3-107206152-2	chr3	107206052	107206252	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15580.0	NM_001111143	229697.0	Mm.297051	NM_001111143	ENSMUSG00000046213	Cym	Gm131	chymosin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-87612225-1	chr17	87612125	87612325	+	794.0	f1_c57bl6.idr	Intergenic	(TTTTG)n|Simple_repeat|Simple_repeat	-23754.0	NM_008532	17075.0	Mm.4259	NM_008532	ENSMUSG00000045394	Epcam	CD326|EGP|EGP-2|Egp314|Ep-CAM|EpCAM1|GA733-2|Ly74|TROP1|Tacsd1|Tacstd1|gp40	epithelial cell adhesion molecule	protein-coding	0.89116621127626	0.963215560699512	0.334575862834312	0.329050457283522	0.712176747666363	0.851291980331413	0.336153697172774	0.330016421144435	-0.517962179499613	0.782793290973704	1
Merged-chr11-58905020-2	chr11	58904920	58905120	+	786.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011758)	promoter-TSS (NM_011758)	-795.0	NM_011758	22698.0	Mm.127646	NM_011758	ENSMUSG00000037001	Zfp39	CTfin33|Zfp-39	zinc finger protein 39	protein-coding	0.129816407817895	-0.121313982664151	0.541925986509694	-0.130118595609434	-0.135537034307161	-0.120193515466359	-0.125188055513174	0.40864585175248	-0.808918849226166	0.729212324434643	1
Merged-chr1-36737499-3	chr1	36737392	36737592	+	807.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040290, intron 5 of 8)	intron (NR_040290, intron 5 of 8)	22954.0	NR_040290	71166.0	Mm.157049	NR_040290	ENSMUSG00000102416	4933424G06Rik	1700104I15Rik	RIKEN cDNA 4933424G06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126790451-2	chr7	126790351	126790551	+	792.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019674, intron 2 of 8)	intron (NM_019674, intron 2 of 8)	1913.0	NM_001360464	56420.0	Mm.41998	NM_019674	ENSMUSG00000030697	Ppp4c	1110002D08Rik|AU016079|PP-X|PP4C|Ppx|pp4	protein phosphatase 4, catalytic subunit	protein-coding	-2.18138529563533	-2.15523716995652	-2.1631445789866	-2.16963996020037	-2.05513010215571	-2.15352360143315	-2.16135451490766	-2.16847729006863	0.759018020146679	0.829933115115583	1
Merged-chr18-70415606-3	chr18	70415510	70415710	+	914.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-56844.0	NM_029019	170461.0	Mm.83623	NM_029019	ENSMUSG00000079608	Stard6	1700011K09Rik|4833424I06Rik|4933429L05Rik|AI644424	StAR-related lipid transfer (START) domain containing 6	protein-coding	3.80349416953374	4.28321207162758	3.78284345772999	3.61673715549177	1.43434181459644	3.29883227065281	2.13809386401724	2.59647504225021	-2.21496244314377	0.00103331568859217	0.0199852164641729
Merged-chr12-35269684-4	chr12	35269592	35269792	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME1|LINE|L1	-74795.0	NR_030449	751520.0		NR_030449	ENSMUSG00000076253	Mir680-3	Mirn680-3	microRNA 680-3	ncRNA	2.97066720115631	4.80171431511081	3.61861786293989	3.86522495255589	3.5090347838413	3.38502910149614	3.26760660921652	3.9439245488708	-0.60425835859208	0.282274456923083	0.784878071602676
Merged-chr11-60930565-2	chr11	60930465	60930665	+	606.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_027800, intron 1 of 1)	intron (NR_027800, intron 1 of 1)	1302.0	NR_027800	24082.0	Mm.46270	NM_025293	ENSMUSG00000042549	Map2k3os	F3-1|Gm16516|Gtlf3a	mitogen-activated protein kinase kinase 3, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119913782-4	chr11	119913716	119913916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001085498)	promoter-TSS (NM_001085498)	6.0	NM_001085498	208092.0	Mm.306673	NM_001085498	ENSMUSG00000025371	Chmp6	2400004G01Rik	charged multivesicular body protein 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-133754348-3	chr3	133754261	133754461	+	847.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-209971.0	NM_001346736	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-21335932-4	chr16	21335827	21336027	+	644.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-2571.0	NR_131983	76222.0	Mm.86031	NR_131983		Magef1	6430590I03Rik	melanoma antigen family F, 1	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-100028115-2	chr12	100028015	100028215	+	672.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164426, intron 2 of 2)	Lx5b|LINE|L1	63616.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-86803328-2	chr12	86803228	86803428	+	578.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	68959.0	NM_001195767	627607.0	Mm.341880	NM_001195767	ENSMUSG00000059114	Lrrc74a	EG627607|Gm6772|Lrrc74	leucine rich repeat containing 74A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-51908355-4	chr13	51908267	51908467	+	882.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61692.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-142022777-2	chr6	142022677	142022877	+	631.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-14032.0	NM_001081318	625716.0	Mm.295865	NM_001081318	ENSMUSG00000079263	Gm6614	EG625716	predicted gene 6614	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122704699-4	chr5	122704593	122704793	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2851.0	NM_001310720	18438.0	Mm.290884	NM_011026	ENSMUSG00000029470	P2rx4	AI504491|AW555605|D5Ertd444e|P2X4	purinergic receptor P2X, ligand-gated ion channel 4	protein-coding	4.06597090539492	2.52960414650916	1.98724244623979	4.09055075624016	3.87893523039276	2.89702146442013	4.13091576189987	3.52101639004936	0.29497318701418	0.663690847447689	0.991657818949578
Merged-chr3-96633508-2	chr3	96633408	96633608	+	593.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_025875, exon 6 of 6)	3' UTR (NM_025875, exon 6 of 6)	-1849.0	NR_027845	18632.0	Mm.20901	NM_011069	ENSMUSG00000028102	Pex11b	PEX11beta|Pex11pbeta	peroxisomal biogenesis factor 11 beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-85352736-4	chr11	85352648	85352848	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166642)	promoter-TSS (NM_001166642)	-416.0	NM_001166642	192197.0	Mm.209989	NM_138681	ENSMUSG00000059439	Bcas3	1500019F07Rik|2610028P08Rik|AU021018|BC028339|K20D4|rudhira	breast carcinoma amplified sequence 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-26374239-4	chr10	26374207	26374407	+	964.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347467)	promoter-TSS (NM_001347467)	-235.0	NM_001359254	237339.0	Mm.338439	NM_172787	ENSMUSG00000039089	L3mbtl3	AI481284|MBT-1	L3MBTL3 histone methyl-lysine binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-148707548-4	chr5	148707433	148707633	+	805.68335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34307.0	NR_028285	70138.0	Mm.417834	NR_028285	ENSMUSG00000086494	2210417A02Rik	AV081004	RIKEN cDNA 2210417A02 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45181631-3	chr7	45181498	45181698	+	926.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_053256, exon 3 of 3)	exon (NM_053256, exon 3 of 3)	603.0	NM_053256	114640.0	Mm.207078	NM_053256	ENSMUSG00000038300	Pth2	Tifp39|Tip39	parathyroid hormone 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122284205-3	chr8	122284102	122284302	+	849.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009569, intron 1 of 9)	intron (NM_009569, intron 1 of 9)	2061.0	NM_009569	22761.0	Mm.3105	NM_009569	ENSMUSG00000049577	Zfpm1	FOG|Fog1	zinc finger protein, multitype 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-96103203-2	chr16	96103103	96103303	+	807.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-20775.0	NM_145125	93871.0	Mm.240871	NM_145125	ENSMUSG00000022914	Brwd1	5330419I02Rik|D530019K20Rik|G1-403-16|Wdr9|repro5	bromodomain and WD repeat domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-60040054-2	chr1	60039954	60040154	+	668.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001316694, intron 1 of 10)	B1_Mus1|SINE|Alu	3068.0	NM_001357296	70375.0	Mm.17834	NM_027407	ENSMUSG00000026018	Ica1l	1700030B17Rik|Als2cr15|b2b3465Clo	islet cell autoantigen 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-90209413-2	chr9	90209313	90209513	+	564.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 11 of 12)	intron (NM_194334, intron 11 of 12)	46435.0	NM_001311115	108153.0	Mm.102141	NM_001003911	ENSMUSG00000032363	Adamts7	ADAM-TS7|ADAMTS7B	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 7	protein-coding	-0.848598212984207	-1.0872589546502	-1.09814238002429	-1.10530268522372	-1.10789828006858	-1.08490047097035	-1.09567861107749	-0.683615635754006	0.687562602464998	0.835498131509325	1
Merged-chr15-12376334-4	chr15	12376245	12376445	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081064, exon 19 of 24)	exon (NM_001081064, exon 19 of 24)	54849.0	NM_025673	66629.0	Mm.157655	NM_025673	ENSMUSG00000022200	Golph3	4733401N08Rik|5730410D03Rik|AW413496	golgi phosphoprotein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-38356886-2	chr6	38356786	38356986	+	668.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2283.0	NM_028864	78781.0	Mm.25243	NM_028421	ENSMUSG00000029826	Zc3hav1	1200014N16Rik|2900058M19Rik|9130009D18Rik|9830115L13Rik|ARTD13|D6Bwg1452e|ZAP	zinc finger CCCH type, antiviral 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-32186997-3	chr19	32186898	32187098	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 5 of 9)	intron (NM_144792, intron 5 of 9)	24015.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-86190931-4	chr5	86190823	86191023	+	781.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310653, intron 1 of 1)	intron (NM_001310653, intron 1 of 1)	6978.0	NM_001310653	14715.0	Mm.26791	NM_010323	ENSMUSG00000029255	Gnrhr	-	gonadotropin releasing hormone receptor	protein-coding	4.96232550200105	4.72461789463841	4.96139334451634	4.16726126243344	3.87767901671463	3.98246266400242	3.76597332802554	2.53760279421475	-1.44542055729324	0.00187106646045198	0.0317521361627655
Merged-chr12-33159521-3	chr12	33159398	33159598	+	756.083313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028139, intron 2 of 3)	intron (NM_028139, intron 2 of 3)	11812.0	NM_028139	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-66410203-4	chr2	66410095	66410295	+	911.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001313997, intron 1 of 26)	intron (NM_001313997, intron 1 of 26)	30642.0	NM_018733	20265.0	Mm.439704	NM_018733	ENSMUSG00000064329	Scn1a	B230332M13|Nav1.1	sodium channel, voltage-gated, type I, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-67061734-2	chr13	67061634	67061834	+	656.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166218)	promoter-TSS (NM_001166218)	-564.0	NM_001166218	78251.0	Mm.297247	NM_001166218	ENSMUSG00000090641	Zfp712	4921504N20Rik|mszf31|mszf89	zinc finger protein 712	protein-coding	0.13761165095778	0.350354283882385	0.179334671012459	0.0114481045456008	0.538365334585711	0.357456706908966	0.0160600608223819	0.0120733678748731	0.663754598937246	0.741808941119863	1
Merged-chr1-16121658-2	chr1	16121558	16121758	+	568.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133832, intron 2 of 5)	RLTR11A2|LTR|ERVK	15776.0	NM_133832	98711.0	Mm.274376	NM_133832	ENSMUSG00000025921	Rdh10	3110069K09Rik|4921506A21Rik|AI875664|AW549993|D1Ertd762e|m366Asp	retinol dehydrogenase 10 (all-trans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-75954698-4	chr10	75954603	75954803	+	649.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198635, intron 1 of 13)	intron (NM_198635, intron 1 of 13)	189.0	NM_198635	333669.0	Mm.31077	NM_198635	ENSMUSG00000033255	Gm5134	EG333669	predicted gene 5134	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150048036-2	chr4	150047930	150048130	+	955.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20424.0	NR_029751	723848.0		NR_029751	ENSMUSG00000065493	Mir34a	Mirn34a|mir-34a|mmu-mir-34a	microRNA 34a	ncRNA	0.53270782996028	0.379101382025867	0.726399195031246	0.472954924574643	0.54091164783525	0.20013100756779	0.194776369401658	0.190225676708565	-1.88096944035437	0.32570325287836	1
Merged-chr7-133133993-2	chr7	133133893	133134093	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_046279, intron 2 of 2)	(TG)n|Simple_repeat|Simple_repeat	5742.0	NR_046279	74970.0	Mm.491044	NR_046279	ENSMUSG00000109816	4930483O08Rik	-	RIKEN cDNA 4930483O08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-90130232-4	chr7	90130126	90130326	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146194)	promoter-TSS (NM_146194)	13.0	NM_001252520	233489.0	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-32698460-4	chr3	32698346	32698546	+	864.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10100.0	NM_019673	56456.0	Mm.41077	NM_019673	ENSMUSG00000027671	Actl6a	2810432C06Rik|AI851094|ARP4|Actl6|Baf53a|C79802	actin-like 6A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64680216-4	chr5	64680131	64680331	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69532.0	NR_045078	100042198.0	Mm.25191	NR_045078	ENSMUSG00000105402	Gm3716	Gm1683	predicted gene 3716	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-57818919-2	chr15	57818819	57819019	+	678.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_199449, intron 2 of 3)	intron (NM_199449, intron 2 of 3)	73499.0	NM_024207	67819.0	Mm.289387	NM_024207	ENSMUSG00000022365	Derl1	1110021N07Rik|AI195141|AW551338|Derlin-1	Der1-like domain family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-77970955-4	chr15	77970809	77971009	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018749)	promoter-TSS (NM_018749)	-85.0	NM_018749	55944.0	Mm.3955	NM_018749	ENSMUSG00000016554	Eif3d	66/67kDa|AA407891|Eif3s7|eIF3p66	eukaryotic translation initiation factor 3, subunit D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-16115400-2	chr9	16115300	16115500	+	695.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080814, intron 2 of 24)	intron (NM_001080814, intron 2 of 24)	-240844.0	NM_145712	244701.0	Mm.222631	NM_145712	ENSMUSG00000050901	Mtnr1b	Mel-1B-R|Mel1b|Mt2	melatonin receptor 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-117520180-2	chr5	117520080	117520280	+	965.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001312914, intron 3 of 19)	intron (NM_001312914, intron 3 of 19)	106178.0	NM_001312914	333050.0	Mm.437947	NM_001034873	ENSMUSG00000061578	Ksr2	-	kinase suppressor of ras 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83595917-4	chr11	83595806	83596006	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_036453, intron 1 of 8)	MLTR14|LTR|ERV1	-2819.0	NM_009139	20305.0	Mm.137	NM_009139	ENSMUSG00000018927	Ccl6	MRP-1|Scya6|c10	chemokine (C-C motif) ligand 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-95884961-3	chr4	95884864	95885064	+	836.766663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113412, intron 14 of 15)	intron (NM_001113412, intron 14 of 15)	82071.0	NR_045777	319247.0	Mm.473527	NM_175680	ENSMUSG00000044125	9530080O11Rik	-	RIKEN cDNA 9530080O11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118197794-2	chr11	118197694	118197894	+	611.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	14948.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166607101-2	chr2	166607001	166607201	+	585.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 10 of 39)	L2b|LINE|L2	42579.0	NR_152154	433503.0	Mm.491336	NR_152154		Gm29679	-	predicted gene, 29679	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-65484591-4	chr3	65484493	65484693	+	988.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43854.0	NM_178892	99929.0	Mm.246398	NM_178892	ENSMUSG00000034640	Tiparp	ARTD14|AW558171|PARP7	TCDD-inducible poly(ADP-ribose) polymerase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71385201-1	chr8	71385101	71385301	+	661.0	f1_balb.idr	3' UTR (NM_181418, exon 13 of 13)	3' UTR (NM_181418, exon 13 of 13)	-3249.0	NM_010150	13864.0	Mm.28989	NM_010150	ENSMUSG00000002393	Nr2f6	AV090102|COUP-TF3|EAR2|Erbal2	nuclear receptor subfamily 2, group F, member 6	protein-coding	2.09375756393842	2.21433449703813	2.60212392539888	1.31119643340673	2.84817575720106	2.71480371402986	1.60773674302153	2.44392648995778	0.779550548619894	0.404659931410932	0.889684743035763
Merged-chr10-81400337-2	chr10	81400237	81400437	+	597.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008688, exon 10 of 10)	3' UTR (NM_008688, exon 10 of 10)	7273.0	NM_001099917	72273.0	Mm.253147	NM_001099917	ENSMUSG00000078439	Smim24	2210404O07Rik	small integral membrane protein 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-69687208-4	chr1	69687089	69687289	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1229.0	NM_011770	22779.0	Mm.106343	NM_011770	ENSMUSG00000025997	Ikzf2	A730095J18Rik|Helios|Zfpn1a2|Znfn1a2	IKAROS family zinc finger 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-60999260-4	chr9	60999178	60999378	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-17791.0	NR_040767	330956.0	Mm.207985	NR_040767	ENSMUSG00000111290	Gm5122	A430102L10	predicted gene 5122	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5303366-7	chr17	5303293	5303493	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 8 of 19)	intron (NM_001085355, intron 8 of 19)	115374.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4558086-4	chr16	4557979	4558179	+	927.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031182, intron 1 of 6)	intron (NM_031182, intron 1 of 6)	1641.0	NM_031182	83383.0	Mm.273210	NM_031182	ENSMUSG00000005718	Tfap4	AI642933|AP-4|D930048N17Rik|Tcfap4|bHLHc41	transcription factor AP4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80641591-4	chr7	80641337	80641537	+	996.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040343, intron 4 of 4)	intron (NR_040343, intron 4 of 4)	5420.0	NR_040343	100504375.0	Mm.322881	NR_040343	ENSMUSG00000084821	Gm15880	-	predicted gene 15880	ncRNA	1.23154292746409	0.665139034476545	0.655278627063469	0.82281537584843	1.40704487220161	0.874987356572085	1.00913302814425	1.32160439606908	1.44337557824217	0.331050068648261	0.83197671091297
Merged-chr17-53479836-1	chr17	53479736	53479936	+	1000.0	f0_balb.idr	intron (NM_025887, intron 1 of 5)	CpG	602.0	NM_025887	271457.0	Mm.329123	NM_025887	ENSMUSG00000017831	Rab5a	2410015H04Rik|AI663973|AU021172|nnyRab5a	RAB5A, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-23997051-4	chr18	23996954	23997154	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011755, intron 2 of 2)	intron (NM_011755, intron 2 of 2)	7420.0	NM_011755	22694.0	Mm.290596	NM_011755	ENSMUSG00000063281	Zfp35	Zfp-35|Znf271|mszf13|mszf20-1|mszf28|mszf68	zinc finger protein 35	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-55390404-3	chr9	55390304	55390504	+	841.8777470000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172923, intron 3 of 10)	RCHARR1|DNA|hAT-Charlie	63491.0	NM_001357568	244886.0	Mm.24361	NM_172923	ENSMUSG00000032313	Tmem266	9630029F15|AI118078|HVRP1	transmembrane protein 266	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28214342-4	chr7	28214247	28214447	+	833.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34031.0	NM_001271370	13549.0	Mm.57249	NM_010092	ENSMUSG00000002409	Dyrk1b	Mirk	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-113645241-1	chr2	113645141	113645341	+	612.0	f1_balb.idr	intron (NM_001285459, intron 13 of 16)	intron (NM_001285459, intron 13 of 16)	-39849.0	NM_001287818	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	0.888446530927789	0.275149800789678	0.268777657057308	0.683520335615265	0.820589776171013	0.276585889514201	0.270183292521173	0.568326830764286	-0.328663639537591	0.865068972240434	1
Merged-chr19-10801257-4	chr19	10801152	10801352	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009852, intron 1 of 12)	intron (NM_009852, intron 1 of 12)	28806.0	NM_001037801	12511.0	Mm.290897	NM_009852	ENSMUSG00000024670	Cd6	-	CD6 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-136569736-4	chr1	136569650	136569850	+	982.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55151.0	NM_177643	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-7343311-3	chr9	7343212	7343412	+	782.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1085.0	NM_001320077	17381.0	Mm.2055	NM_008605	ENSMUSG00000049723	Mmp12	AV378681|MME|Mmel	matrix metallopeptidase 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-29719761-1	chr11	29719661	29719861	+	597.0	f1_c57bl6.idr	intron (NM_024226, intron 1 of 6)	intron (NM_024226, intron 1 of 6)	1198.0	NM_024226	68585.0	Mm.192580	NM_024226	ENSMUSG00000020458	Rtn4	1110020G17Rik|AA407876|AA409940|AA960376|ASY|C130026I10Rik|NOGO|NSP-CL|NgA|Nogo-A|Nogo-B|Nogo-C|mKIAA0886|mKIAA4153	reticulon 4	protein-coding	-0.0328751063574305	-0.00596247286183493	-0.0146195527939194	1.16524542867519	-0.0311510877867905	-0.00403123893956561	-0.0126973596577685	0.84946436135516	-0.705457903025214	0.754935338786229	1
Merged-chr15-74918630-4	chr15	74918518	74918718	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36433.0	NM_001164039	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-26356379-4	chr12	26356296	26356496	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_130981, intron 2 of 4)	intron (NR_130981, intron 2 of 4)	9686.0	NR_130981	75243.0	Mm.444753	NR_130981	ENSMUSG00000114048	4930549C15Rik	-	RIKEN cDNA 4930549C15 gene	ncRNA	4.50763528305594	5.41282300752277	4.96706560786824	4.84321281299251	4.37561160391739	3.70421577715428	5.29440780349128	3.44804233527742	-0.688070537517224	0.128044393665772	0.559983154356158
Merged-chr14-105622332-3	chr14	105622224	105622424	+	660.133362	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	1446.0	NR_105814	102465207.0		NR_105814	ENSMUSG00000098780	Mir6390	Gm27562|mmu-mir-6390	microRNA 6390	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-52115999-3	chr5	52115877	52116077	+	766.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	20040.0	NR_105845	102466648.0		NR_105845	ENSMUSG00000098726	Mir6417	Gm27334|mmu-mir-6417	microRNA 6417	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-84961520-4	chr2	84961435	84961635	+	854.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18926.0	NM_008920	19074.0	Mm.142727	NM_008920	ENSMUSG00000027073	Prg2	EMBP|MBP|mMBP|mMBP-1	proteoglycan 2, bone marrow	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-25228712-4	chr2	25228543	25228743	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_080854)	TTS (NM_080854)	-3941.0	NM_146116	227613.0	Mm.227260	NM_146116	ENSMUSG00000036752	Tubb4b	4930542G03Rik|Tubb2c|Tubb2c1	tubulin, beta 4B class IVB	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-51734797-4	chr13	51734700	51734900	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001281880, intron 2 of 16)	intron (NM_001281880, intron 2 of 16)	58947.0	NM_001281880	20354.0	Mm.33903	NM_013660	ENSMUSG00000021451	Sema4d	CD100|Semacl2|Semaj|Semcl2|coll-4	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D	protein-coding	4.05766416606978	2.87164476638944	3.1361265047778	3.23725271834336	3.97010127718471	2.89366063420539	3.050139983577	3.41953538031092	-0.0115947764505436	0.984848578790529	0.998431161219273
Merged-chr2-13538430-4	chr2	13538347	13538547	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010067, intron 1 of 10)	MIR|SINE|MIR	6217.0	NM_010067	13434.0	Mm.6979	NM_010067	ENSMUSG00000026723	Trdmt1	Dnmt2|Rnmt2	tRNA aspartic acid methyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-66404673-3	chr18	66404591	66404791	+	688.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53913.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-72536332-2	chr14	72536232	72536432	+	556.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	173671.0	NM_207636	319448.0	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-28071209-4	chr5	28071115	28071315	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153526)	promoter-TSS (NM_153526)	-197.0	NM_153526	231070.0	Mm.30221	NM_153526	ENSMUSG00000045294	Insig1	1810013C12Rik|Insig-1	insulin induced gene 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-3340971-2	chr18	3340871	3341071	+	782.200012	f1_balb.idr|f1_c57bl6.idr	intron (NR_033457, intron 1 of 1)	intron (NR_033457, intron 1 of 1)	-3382.0	NM_001110852	12916.0	Mm.5244	NM_013498	ENSMUSG00000063889	Crem	ICER|ICERI	cAMP responsive element modulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-169928777-7	chr2	169928678	169928878	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34409.0	NR_131974	446211.0	Mm.266854	NR_131974	ENSMUSG00000103935	AY702102	STDP1	cDNA sequence AY702102	ncRNA	3.63085533214373	4.31271670387499	4.12077704767087	4.01145554709598	4.05573931865491	4.15798108370855	3.46277331957474	3.97127577564292	-0.133193315931497	0.769851648406993	0.998431161219273
Merged-chr7-44953976-2	chr7	44953876	44954076	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077591, intron 7 of 10)	intron (NM_001077591, intron 7 of 10)	10736.0	NM_011651	22116.0	Mm.84502	NM_011651	ENSMUSG00000059891	Tsks	Stk22s1|Tssks1	testis-specific serine kinase substrate	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-31754810-4	chr5	31754701	31754901	+	883.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144541, intron 3 of 11)	ORR1E|LTR|ERVL-MaLR	56751.0	NM_144541	107976.0	Mm.482126	NM_144541	ENSMUSG00000052139	Babam2	6030405P19Rik|AI429776|B830038C02Rik|Bre	BRISC and BRCA1 A complex member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-31151688-4	chr7	31151620	31151820	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360351)	promoter-TSS (NM_001360351)	-549.0	NR_153431	52857.0	Mm.27366	NM_027898	ENSMUSG00000001248	Gramd1a	1300003M23Rik|AI415002|AW547240|D7Bwg0611e	GRAM domain containing 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-7630464-2	chr15	7630364	7630564	+	560.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-179584.0	NM_010275	14573.0	Mm.4679	NM_010275	ENSMUSG00000022144	Gdnf	AI385739|ATF	glial cell line derived neurotrophic factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-37867066-4	chr6	37866951	37867151	+	854.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-3760.0	NM_001272064	21848.0	Mm.41063	NM_145076	ENSMUSG00000029833	Trim24	A130082H20Rik|AI447469|D430004I05Rik|TIF1|TIF1-alpha|TIF1alpha|Tif1a	tripartite motif-containing 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123682569-4	chr5	123682454	123682654	+	938.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359224, intron 1 of 18)	intron (NM_001359224, intron 1 of 18)	1807.0	NM_019765	56430.0	Mm.241109	NM_019765	ENSMUSG00000049550	Clip1	1110007I12Rik|4631429H07Rik|AV017631|C81039|CLIP-170|CLIP170|CYLN1|Clip50|Rsn|mKIAA4046|restin	CAP-GLY domain containing linker protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-108642264-4	chr12	108642160	108642360	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163396, intron 2 of 14)	intron (NM_001163396, intron 2 of 14)	6507.0	NM_001163396	14026.0	Mm.238841	NM_007965	ENSMUSG00000021262	Evl	AI528774|b2b2600Clo	Ena-vasodilator stimulated phosphoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-4563144-2	chr2	4563044	4563244	+	676.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177844, intron 1 of 11)	intron (NM_001177844, intron 1 of 11)	3390.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-27019182-2	chr8	27019082	27019282	+	754.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4617.0	NM_153592	244373.0	Mm.277699	NM_153592	ENSMUSG00000031483	Erlin2	BC036333|C87251|Spfh2	ER lipid raft associated 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-108885099-2	chr3	108884999	108885199	+	853.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001165965, intron 2 of 11)	intron (NM_001165965, intron 2 of 11)	4909.0	NM_177091	320181.0	Mm.244233	NM_177091	ENSMUSG00000045326	Fndc7	E230011A21Rik	fibronectin type III domain containing 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-151619452-3	chr1	151619368	151619568	+	640.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022018, intron 1 of 13)	intron (NM_022018, intron 1 of 13)	48095.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-53466709-4	chr3	53466632	53466832	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173382, intron 1 of 12)	intron (NM_173382, intron 1 of 12)	2915.0	NM_173382	212127.0	Mm.491292	NM_173382	ENSMUSG00000049504	Proser1	2810046L04Rik|9330161F11	proline and serine rich 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100958483-2	chr7	100958383	100958583	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183168, intron 1 of 2)	B1_Mus1|SINE|Alu	5883.0	NM_183168	233571.0	Mm.235193	NM_183168	ENSMUSG00000048779	P2ry6	2010204J23Rik|P2Y6	pyrimidinergic receptor P2Y, G-protein coupled, 6	protein-coding	-1.36015291771705	-1.32842431658676	-1.33874579108173	-1.34722415754512	-1.35969949349639	-1.32618761000664	-1.33640923549635	-0.791042329471244	2.42373733289067	0.484013421080845	1
Merged-chr16-90934934-4	chr16	90934837	90935037	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026502)	promoter-TSS (NM_026502)	-88.0	NM_026502	68001.0	Mm.45374	NM_026502	ENSMUSG00000022972	1110004E09Rik	-	RIKEN cDNA 1110004E09 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5778241-2	chr19	5778141	5778341	+	742.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13A2|LTR|ERVK	-6822.0	NR_155264	78891.0	Mm.276063	NM_023912	ENSMUSG00000024941	Scyl1	2810011O19Rik|C85140|Ntkl|mdf|mfd|p105	SCY1-like 1 (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100706412-7	chr7	100706326	100706526	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001362169)	promoter-TSS (NM_001362169)	-209.0	NM_001362169	319604.0	Mm.260362	NM_178764	ENSMUSG00000029461	Fam168a	2610030B18Rik|B930006L02Rik|mKIAA0280	family with sequence similarity 168, member A	protein-coding	4.78892339475281	4.78727967307502	4.96724656023712	3.80016396280436	5.33535817215324	4.61647379644694	4.62557977451334	3.73875527242019	0.0596445245794162	0.890872254767901	0.998431161219273
Merged-chr2-59238775-2	chr2	59238675	59238875	+	799.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 2 of 20)	ORR1A4|LTR|ERVL-MaLR	77925.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-145118402-2	chr5	145118302	145118502	+	886.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023142, intron 1 of 9)	intron (NM_023142, intron 1 of 9)	4146.0	NM_023142	11867.0	Mm.30010	NM_023142	ENSMUSG00000029622	Arpc1b	41kDa|AA408064|AA408534|AA571392|AF007010|AW208418|L72|SOP2Hs|p41-ARC	actin related protein 2/3 complex, subunit 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-108894231-4	chr12	108894143	108894343	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177602)	promoter-TSS (NM_177602)	-29.0	NM_177602	212198.0	Mm.342082	NM_177602	ENSMUSG00000040877	Wdr25	B930090D16Rik	WD repeat domain 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-24039036-4	chr5	24038940	24039140	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8350.0	NM_053090	84652.0	Mm.304976	NM_053090	ENSMUSG00000028995	Fam126a	AB030242|Drctnnb1a	family with sequence similarity 126, member A	protein-coding	2.80611777052006	2.91979198867852	2.81997064595521	3.79096100930633	3.3042374709512	3.06368517813713	3.56915889831255	2.48168875930874	0.00406052703417528	0.995023107563746	0.998431161219273
Merged-chr1-60973205-2	chr1	60973105	60973305	+	694.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4709.0	NM_017480	54167.0	Mm.42044	NM_017480	ENSMUSG00000026009	Icos	AILIM|CCLP|CRP-1|H4|Ly115	inducible T cell co-stimulator	protein-coding	1.17259262087306	0.502908034239473	0.49344725674301	0.667291098647985	1.18626970218828	1.29107822324948	0.495541650532086	0.670857357105058	1.01406773994031	0.541746191604455	1
Merged-chr18-38208412-2	chr18	38208312	38208512	+	933.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029357, intron 1 of 2)	intron (NM_029357, intron 1 of 2)	1350.0	NM_029357	75599.0	Mm.36560	NM_029357	ENSMUSG00000051375	Pcdh1	2010005A06Rik|AI585920	protocadherin 1	protein-coding	-0.705102255032725	-0.952111685752871	-0.962615221777784	-0.437351596801677	-0.967644059894427	-0.94954428968602	-0.961277147858996	-0.964338302966076	-2.86336605559115	0.354266356515036	1
Merged-chr15-12052404-3	chr15	12052289	12052489	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56382.0	NM_011294	20024.0	Mm.41746	NM_011294	ENSMUSG00000022205	Sub1	AI842364|P15|P9|Pc4|Rpo2tc1	SUB1 homolog (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-79653733-4	chr2	79653637	79653837	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080558, intron 9 of 17)	intron (NM_080558, intron 9 of 17)	18312.0	NM_080558	70599.0	Mm.272881	NM_080558	ENSMUSG00000027007	Ssfa2	5730488C15Rik|CS-1|CS1|KRAP|SPAG13|mKIAA1927	sperm specific antigen 2	protein-coding	4.84274151235704	4.79526946750739	4.09763281930671	3.70771035945757	4.23170559620857	3.50266526349555	3.3787134228546	4.23449002438809	-0.71615684468991	0.13237350886641	0.56954804343643
Merged-chr10-62500396-4	chr10	62500305	62500505	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358965, intron 2 of 3)	intron (NM_001358965, intron 2 of 3)	7352.0	NM_011157	19073.0	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55726535-2	chr14	55726435	55726635	+	784.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-4272.0	NM_001360387	56187.0	Mm.87216	NM_019519	ENSMUSG00000040472	Rabggta	gm	Rab geranylgeranyl transferase, a subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117865231-2	chr10	117865131	117865331	+	874.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-19257.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-10310774-2	chr17	10310674	10310874	+	586.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021881, intron 1 of 6)	intron (NM_021881, intron 1 of 6)	8587.0	NM_021881	19317.0	Mm.130694	NM_021881	ENSMUSG00000062078	Qk	1110003F05Rik|1500005P18|QkI|l(17)-1Wis|l17Wis1	quaking	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-14065012-4	chr14	14064905	14065105	+	913.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139227, intron 4 of 11)	intron (NM_139227, intron 4 of 11)	52514.0	NM_139227	246103.0	Mm.133625	NM_139227	ENSMUSG00000021738	Atxn7	A430107N12Rik|AI627028|Sca7|ataxin-7	ataxin 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-55867573-2	chr7	55867473	55867673	+	828.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164661, intron 2 of 31)	intron (NM_001164661, intron 2 of 31)	25502.0	NM_001164661	20430.0	Mm.37249	NM_011370	ENSMUSG00000030447	Cyfip1	E030028J09Rik|P140SRA-1|P140sra1|Shyc|Sra-1|Sra1|l(7)1Rl|l71Rl|l7Rl1|mKIAA0068|pl-1	cytoplasmic FMR1 interacting protein 1	protein-coding	0.284026303864767	0.155913099218293	0.833906057766273	0.144533215067455	0.288483559765653	0.157356951275778	0.846671948693466	0.316877891333726	0.252551098810548	0.894065932401775	1
Merged-chr2-4565815-2	chr2	4565715	4565915	+	835.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177844, intron 1 of 11)	intron (NM_001177844, intron 1 of 11)	6061.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-41378373-2	chr4	41378273	41378473	+	874.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355509, intron 3 of 5)	BC1_Mm|scRNA|scRNA	26410.0	NM_001355508	67123.0	Mm.289795	NM_023305	ENSMUSG00000028437	Ubap1	2700092A01Rik|NAG20|UBAP-1|Ubap	ubiquitin-associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-111864257-1	chr1	111864157	111864357	+	943.0	f0_c57.idr	5' UTR (NM_001081316, exon 1 of 2)	5' UTR (NM_001081316, exon 1 of 2)	661.0	NM_001081316	319901.0	Mm.103468	NM_001081316	ENSMUSG00000038702	Dsel	9330132E09Rik|DS-epi2	dermatan sulfate epimerase-like	protein-coding	-0.578581758788833	-0.566510141181558	0.212845499836011	-0.573511218202492	-0.425686719035966	-0.565620312216527	-0.381763563287384	-0.572978055921832	-1.67701664722425	0.523400741625476	1
Merged-chr16-10991177-4	chr16	10991086	10991286	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019980, intron 1 of 3)	intron (NM_019980, intron 1 of 3)	1935.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-38064258-2	chr1	38064158	38064358	+	749.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019570, intron 12 of 22)	intron (NM_019570, intron 12 of 22)	65408.0	NM_001359287	56210.0	Mm.389103	NM_019570	ENSMUSG00000026082	Rev1	1110027I23Rik|AU022044|Rev1l	REV1, DNA directed polymerase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69235367-4	chr11	69235267	69235467	+	957.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008192, intron 3 of 18)	C-rich|Low_complexity|Low_complexity	1655.0	NM_008192	14919.0	Mm.291816	NM_008192	ENSMUSG00000020890	Gucy2e	GC-E|GC1|ROS-GC1	guanylate cyclase 2e	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-69017609-4	chr8	69017518	69017718	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-71118.0	NM_007509	11966.0	Mm.249096	NM_007509	ENSMUSG00000006273	Atp6v1b2	AI194269|AI790362|Atp6b2|HO57|R74844	ATPase, H+ transporting, lysosomal V1 subunit B2	protein-coding	2.26692134375268	3.10312216821077	1.74665154366518	3.49111702643629	3.13185865031379	2.42505046932298	2.17715638353288	2.40729246741118	-0.447285427062516	0.583300894399801	0.966599221005409
Merged-chr1-88234058-2	chr1	88233958	88234158	+	819.416626	f1_balb.idr|f1_c57bl6.idr	exon (NM_001281466, exon 8 of 42)	exon (NM_001281466, exon 8 of 42)	7038.0	NM_001281466	100040766.0	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	Heatr7b1	maestro heat-like repeat family member 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139832284-3	chr5	139832178	139832378	+	763.638916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5384.0	NM_025604	66506.0	Mm.29070	NM_025604	ENSMUSG00000029551	Psmg3	1810042K04Rik|4930403H09Rik|AI303239	proteasome (prosome, macropain) assembly chaperone 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-62502265-4	chr4	62502163	62502363	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024257)	promoter-TSS (NM_024257)	-63.0	NM_024257	72748.0	Mm.41506	NM_024257	ENSMUSG00000038422	Hdhd3	2810435D12Rik	haloacid dehalogenase-like hydrolase domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-116687974-2	chr4	116687874	116688074	+	581.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011034, intron 2 of 5)	B1_Mur2|SINE|Alu	-1952.0	NR_040442	100502959.0	Mm.395400	NR_040442		AV051173	-	expressed sequence AV051173	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100934522-2	chr7	100934422	100934622	+	664.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4_|SINE|ID	-2361.0	NM_001081116	207212.0	Mm.29954	NM_001081116	ENSMUSG00000032875	Arhgef17	8030463K16|AI428794|AW558066|BC035332|mKIAA0337	Rho guanine nucleotide exchange factor (GEF) 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-87300399-2	chr17	87300299	87300499	+	865.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028639, intron 3 of 19)	intron (NM_028639, intron 3 of 19)	17513.0	NM_028639	225049.0	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80017230-2	chr7	80017130	80017330	+	820.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7584.0	NM_001145999	209225.0	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-118182839-1	chr14	118182739	118182939	+	540.0	f1_balb.idr	Intergenic	Intergenic	45712.0	NM_021434	58245.0	Mm.275411	NM_021434	ENSMUSG00000022131	Gpr180	AB041545|E130016I23Rik|Itr	G protein-coupled receptor 180	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102457386-2	chr12	102457281	102457481	+	798.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11753.0	NM_001199004	27277.0	Mm.273370	NM_013747	ENSMUSG00000021192	Golga5	Ret-II	golgi autoantigen, golgin subfamily a, 5	protein-coding	2.0030863156086	1.69871892935995	1.64367043159485	2.11490649399335	1.24831280637165	1.54861411190539	1.32257456369424	1.73488996862234	-1.35226394990421	0.207294276474894	0.695372804048214
Merged-chr15-36232270-2	chr15	36232170	36232370	+	550.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_012031, intron 16 of 18)	intron (NM_012031, intron 16 of 18)	7894.0	NR_106173	102465888.0		NR_106173	ENSMUSG00000098457	Mir8097	Gm27497|mmu-mir-8097	microRNA 8097	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-33951791-2	chr10	33951691	33951891	+	872.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_153113)	promoter-TSS (NR_153113)	-532.0	NR_153113	72580.0	Mm.248081	NM_028287	ENSMUSG00000039531	Zufsp	2700019D07Rik	zinc finger with UFM1-specific peptidase domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-83430470-4	chr15	83430378	83430578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358643, intron 1 of 9)	intron (NM_001358643, intron 1 of 9)	2372.0	NM_011862	23970.0	Mm.23978	NM_011862	ENSMUSG00000016664	Pacsin2	AI197433	protein kinase C and casein kinase substrate in neurons 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-103099365-4	chr12	103099236	103099436	+	693.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081017, intron 26 of 48)	intron (NM_001081017, intron 26 of 48)	142810.0	NM_133364	170952.0	Mm.217019	NM_133364	ENSMUSG00000041669	Prima1	B230212M13Rik|BB120497|PRiMA	proline rich membrane anchor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125088841-6	chr6	125088745	125088945	+	984.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7136.0	NM_001346610	107932.0	Mm.333388	NM_145979	ENSMUSG00000063870	Chd4	9530019N15Rik|AA617397|BC005710|D6Ertd380e|Mi-2beta|mKIAA4075	chromodomain helicase DNA binding protein 4	protein-coding	2.45671951964763	2.2639943077833	1.32535238573284	2.23781290756322	2.03954120631066	1.99658092948473	2.42260739597842	2.01706225976328	-0.041925987536525	0.964492848531499	0.998431161219273
Merged-chr3-152478146-6	chr3	152478052	152478252	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081277, intron 12 of 13)	intron (NM_001081277, intron 12 of 13)	81468.0	NM_001287139	108946.0	Mm.379292	NM_198416	ENSMUSG00000039068	Zzz3	3110065C23Rik|6430567E01Rik|AA408566|AI481057|AW556059|R75514	zinc finger, ZZ domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-104261513-4	chr9	104261352	104261552	+	899.19165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359740, intron 1 of 56)	intron (NM_001359740, intron 1 of 56)	1478.0	NM_001359740	235567.0	Mm.217256	NM_001163026	ENSMUSG00000032560	Dnajc13	D030002L11Rik|Gm1124|RME-8|Rme8|mKIAA0678	DnaJ heat shock protein family (Hsp40) member C13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-45861303-2	chr1	45861203	45861403	+	718.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	64291.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-8910530-4	chr4	8910422	8910622	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	159198.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-98384769-4	chr4	98384666	98384866	+	987.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1501.0	NM_053157	94043.0	Mm.331719	NM_053157	ENSMUSG00000028563	Tm2d1	2310026L18Rik|AA990549|Bbp	TM2 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-18971762-4	chr2	18971633	18971833	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008845, intron 1 of 9)	URR1B|DNA|hAT-Charlie	26388.0	NM_008845	18718.0	Mm.313977	NM_008845	ENSMUSG00000026737	Pip4k2a	AW742916|Pip5k2a	phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-32499869-4	chr16	32499704	32499904	+	724.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199309, intron 6 of 8)	intron (NM_199309, intron 6 of 8)	3523.0	NM_199309	245308.0	Mm.76859	NM_199309	ENSMUSG00000052363	Zdhhc19	Gm1744|Gm616	zinc finger, DHHC domain containing 19	protein-coding	2.51135398566329	1.3001921571852	2.28087675099934	1.670515505972	2.8260834747483	1.96508514342868	1.72787304292058	2.1135179849555	0.480086700131062	0.628161973175453	0.980913755422007
Merged-chr2-27712305-2	chr2	27712205	27712405	+	581.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290482, intron 1 of 9)	intron (NM_001290482, intron 1 of 9)	1722.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-81121251-3	chr7	81121156	81121356	+	957.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004184, intron 4 of 17)	intron (NM_001004184, intron 4 of 17)	6457.0	NM_001004184	434203.0	Mm.389909	NM_001004184	ENSMUSG00000025726	Slc28a1	Cnt1	solute carrier family 28 (sodium-coupled nucleoside transporter), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36244271-4	chr1	36244173	36244373	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198899)	promoter-TSS (NM_198899)	29.0	NM_198899	320011.0	Mm.261022	NM_198899	ENSMUSG00000037470	Uggt1	0910001L17Rik|A930007H10Rik|AA589501|AI414429|AI448372|C820010P03Rik|GT|UGT1|Ugcgl1	UDP-glucose glycoprotein glucosyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-99466843-2	chr10	99466743	99466943	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-142328.0	NR_038019	100504202.0	Mm.403801	NR_038019	ENSMUSG00000111962	Gm20110	-	predicted gene, 20110	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-8713026-4	chr19	8712940	8713140	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161413, intron 2 of 9)	intron (NM_001161413, intron 2 of 9)	857.0	NM_008577	17254.0	Mm.4114	NM_008577	ENSMUSG00000010095	Slc3a2	4F2|4F2HC|AI314110|Cd98|Ly-10|Ly-m10|Ly10|Mdu1|Mgp-2hc|NACAE	solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70777270-4	chr8	70777178	70777378	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008841)	promoter-TSS (NM_008841)	416.0	NR_029440	72093.0	Mm.271208	NR_029440		2010320M18Rik	-	RIKEN cDNA 2010320M18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-125899770-1	chr7	125899670	125899870	+	615.0	f1_c57bl6.idr	intron (NM_001358885, intron 4 of 5)	intron (NM_001358885, intron 4 of 5)	182641.0	NM_001101488	269994.0	Mm.39599	NM_001101488	ENSMUSG00000046182	Gsg1l	AI852434|C230098I05Rik|G630023A01Rik|Gm637|g1l	GSG1-like	protein-coding	-1.32440223303897	-1.29339468673833	-0.717877708899544	-1.31276353204239	-1.32392690786997	-1.29109028300231	-1.30162128075409	-1.31119997543009	-2.49510383040271	0.470258445164311	1
Merged-chr17-26942623-4	chr17	26942516	26942716	+	904.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001281491, intron 1 of 18)	intron (NM_001281491, intron 1 of 18)	1164.0	NM_001281491	240057.0	Mm.328888	NM_001281491	ENSMUSG00000067629	Syngap1	Gm1963|Syngap	synaptic Ras GTPase activating protein 1 homolog (rat)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129671656-4	chr4	129671579	129671779	+	812.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008468, intron 1 of 13)	intron (NM_008468, intron 1 of 13)	1088.0	NM_008468	16650.0	Mm.202358	NM_008468	ENSMUSG00000003731	Kpna6	IPOA7|Kpna5|NPI-2	karyopherin (importin) alpha 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-165678302-2	chr1	165678202	165678402	+	763.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038846, intron 1 of 5)	intron (NM_001038846, intron 1 of 5)	29792.0	NM_001038846	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-40759801-1	chr9	40759701	40759901	+	1000.0	f1_balb.idr	intron (NM_133733, intron 1 of 6)	(GA)n|Simple_repeat|Simple_repeat	-41472.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-17764506-4	chr6	17764396	17764596	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022332, intron 1 of 15)	intron (NM_022332, intron 1 of 15)	15326.0	NM_001083315	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80232055-2	chr7	80231955	80232155	+	839.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178752)	promoter-TSS (NM_178752)	750.0	NM_001291276	23991.0	Mm.30217	NM_011870	ENSMUSG00000030538	Cib1	Cibkip|Kip|Prkdcip	calcium and integrin binding 1 (calmyrin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-61498549-2	chr18	61498449	61498649	+	836.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_177828, intron 11 of 12)	intron (NM_177828, intron 11 of 12)	-13942.0	NR_045419	442846.0	Mm.417648	NR_045419		A530050N04Rik	-	RIKEN cDNA A530050N04 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-172443671-2	chr2	172443571	172443771	+	584.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025542, intron 1 of 8)	RSINE1|SINE|B4	3093.0	NM_025542	66404.0	Mm.25157	NM_025542	ENSMUSG00000027502	Rtf2	1700067C04Rik|2410001C21Rik|5730427M17Rik|AA589417|Rtfdc1	replication termination factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89203961-2	chr3	89203861	89204061	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077411, intron 2 of 10)	intron (NM_001077411, intron 2 of 10)	1036.0	NR_122037	14466.0	Mm.5031	NM_008094	ENSMUSG00000028048	Gba	GBA1|GC|GCase|GLUC|betaGC	glucosidase, beta, acid	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-76130093-3	chr13	76129989	76130189	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081352, intron 18 of 43)	intron (NM_001081352, intron 18 of 43)	31355.0	NM_001081352	218343.0	Mm.277964	NM_001081352	ENSMUSG00000033991	Ttc37	-	tetratricopeptide repeat domain 37	protein-coding	1.39285341816588	2.12142588925933	2.51232535055614	1.66472633100463	2.32738801434613	2.40706532092159	2.93069945467651	1.21767324258366	0.833466032792237	0.407147341548905	0.891845785649541
Merged-chr10-111176520-2	chr10	111176420	111176620	+	705.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001003717, intron 1 of 22)	intron (NM_001003717, intron 1 of 22)	11718.0	NM_175489	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-64113352-4	chr15	64113256	64113456	+	999.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010026, intron 25 of 30)	intron (NM_010026, intron 25 of 30)	-52908.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	2.33375659294487	1.64922791326035	2.43242063236632	2.16168392922754	2.1751884016843	2.03272325805533	2.23770420143807	2.17221817063672	-0.0733120693015281	0.933423042132611	0.998431161219273
Merged-chr15-86140569-3	chr15	86140433	86140633	+	848.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_145475, exon 13 of 13)	3' UTR (NM_145475, exon 13 of 13)	-45195.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	3.55128007525622	2.90235761862576	2.45930788160185	4.7071525193407	3.37639472676987	3.52711908135452	4.16280293713129	3.0981820793502	-0.158100829710711	0.806582175187326	0.998431161219273
Merged-chr4-62481425-4	chr4	62481314	62481514	+	993.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138653, intron 1 of 6)	intron (NM_138653, intron 1 of 6)	1347.0	NM_138653	192120.0	Mm.29808	NM_138653	ENSMUSG00000028392	Bspry	-	B-box and SPRY domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-57238333-3	chr9	57238239	57238439	+	741.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001014398, intron 1 of 12)	intron (NM_001014398, intron 1 of 12)	1783.0	NM_001014398	541610.0	Mm.378036	NM_001014398	ENSMUSG00000070298	Trcg1	-	taste receptor cell gene 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-57769517-2	chr9	57769417	57769617	+	820.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3657.0	NM_007713	102414.0	Mm.25720	NM_007713	ENSMUSG00000032316	Clk3	AI256811	CDC-like kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-123370001-4	chr7	123369882	123370082	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001122643)	promoter-TSS (NM_001122643)	-67.0	NM_001316713	70497.0	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-81669770-2	chr12	81669670	81669870	+	634.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	38521.0	NM_001033149	69480.0	Mm.130002	NM_001033149	ENSMUSG00000042734	Ttc9	-	tetratricopeptide repeat domain 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-54955858-5	chr6	54955807	54956007	+	899.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172729, intron 1 of 11)	intron (NM_172729, intron 1 of 11)	15754.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	3.07172953428241	3.35396053087348	2.18347763155487	3.23594376109775	2.61933029301312	3.37819997143468	3.26785424289804	3.76875760273131	0.477563294295038	0.462040246592709	0.921194606787634
Merged-chr4-120032532-4	chr4	120032456	120032656	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010657, intron 2 of 8)	intron (NM_010657, intron 2 of 8)	-128650.0	NM_007902	13615.0	Mm.284855	NM_007902	ENSMUSG00000028635	Edn2	ET-2|PPET2|VIC	endothelin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-94087015-4	chr11	94086961	94087161	+	844.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025428, intron 10 of 26)	B1_Mm|SINE|Alu	42856.0	NM_001025429	70834.0	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100490715-2	chr7	100490615	100490815	+	612.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2643.0	NM_011671	22228.0	Mm.171378	NM_011671	ENSMUSG00000033685	Ucp2	Slc25a8|UCP 2|UCPH	uncoupling protein 2 (mitochondrial, proton carrier)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-75118266-4	chr7	75118172	75118372	+	907.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360573, intron 13 of 13)	intron (NM_001360573, intron 13 of 13)	88061.0	NR_131122	75205.0	Mm.399304	NR_131122	ENSMUSG00000108803	4930533N22Rik	Gm44904	RIKEN cDNA 4930533N22 gene	ncRNA	3.53045420057948	2.26939166745672	2.70000520938436	3.65284261526595	3.61056791200236	3.29386950323318	3.36348885680963	2.63481482712242	0.164620371386683	0.802490901494608	0.998431161219273
Merged-chr5-74016965-3	chr5	74016867	74017067	+	798.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177561, intron 4 of 8)	intron (NM_177561, intron 4 of 8)	51444.0	NM_177561	69727.0	Mm.48795	NM_177561	ENSMUSG00000054814	Usp46	1190009E20Rik|2410018I08Rik|AI451644	ubiquitin specific peptidase 46	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-21961884-2	chr17	21961775	21961975	+	599.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001025373)	promoter-TSS (NM_001025373)	589.0	NM_001199048	73233.0	Mm.311219	NM_001199048	ENSMUSG00000071267	Zfp942	3110048L19Rik	zinc finger protein 942	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-84938704-4	chr2	84938573	84938773	+	815.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021398, intron 3 of 12)	intron (NM_021398, intron 3 of 12)	2027.0	NM_021398	58207.0	Mm.290729	NM_021398	ENSMUSG00000027074	Slc43a3	Eeg1|SEEEG-1	solute carrier family 43, member 3	protein-coding	0.277532186552411	0.0279825573246824	0.348043753138754	0.0182134213014778	0.284187156210931	0.0292251429731507	0.795371896990787	0.0189569724142518	1.12192672049317	0.589855502157178	1
Merged-chr11-114898247-4	chr11	114898130	114898330	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_170758, intron 4 of 6)	intron (NM_170758, intron 4 of 6)	8189.0	NM_170758	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28389037-2	chr7	28388937	28389137	+	884.650024	f1_balb.idr|f1_c57bl6.idr	intron (NM_026042, intron 3 of 3)	intron (NM_026042, intron 3 of 3)	3653.0	NM_026042	67224.0	Mm.41647	NM_026042	ENSMUSG00000003444	Med29	2810405O22Rik|AU020902|Ixl	mediator complex subunit 29	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-77438167-2	chr8	77438067	77438267	+	696.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030113, intron 3 of 22)	intron (NM_030113, intron 3 of 22)	-78889.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-32396002-2	chr6	32395902	32396102	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175750, intron 3 of 31)	intron (NM_175750, intron 3 of 31)	-115139.0	NR_040277	319849.0	Mm.440860	NR_040277	ENSMUSG00000086763	Plxna4os1	B230378P21Rik	plexin A4, opposite strand 1	ncRNA	2.76193072204271	2.25830938872776	1.79194926899541	2.52766327350191	2.99569909723556	3.02379865846234	2.73127522355328	2.74716306356038	0.986599387897649	0.187984747045426	0.666074179132669
Merged-chr19-29806600-4	chr19	29806502	29806702	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172836)	promoter-TSS (NM_172836)	-593.0	NM_172836	240613.0	Mm.313351	NM_172836	ENSMUSG00000046138	9930021J03Rik	Gm9832|mKIAA2026	RIKEN cDNA 9930021J03 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-31056493-2	chr2	31056393	31056593	+	812.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355105, intron 7 of 15)	MTE2b|LTR|ERVL-MaLR	40007.0	NM_001177650	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-22163228-2	chr16	22163128	22163328	+	765.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183029)	promoter-TSS (NM_183029)	71.0	NM_183029	319765.0	Mm.489442	NM_183029	ENSMUSG00000033581	Igf2bp2	C330012H03Rik|IMP-2|Imp2|Neilsen	insulin-like growth factor 2 mRNA binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-152825908-2	chr2	152825808	152826008	+	754.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009743, intron 2 of 2)	intron (NM_009743, intron 2 of 2)	2581.0	NR_149254	12048.0	Mm.238213	NM_009743	ENSMUSG00000007659	Bcl2l1	Bcl(X)L|Bcl-XL|Bcl2l|BclX|bcl-x|bcl2-L-1	BCL2-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-37000493-4	chr1	37000405	37000605	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MDa|LINE|L1	-60978.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-53529070-3	chr11	53528953	53529153	+	750.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361969, intron 1 of 9)	intron (NM_001361969, intron 1 of 9)	8865.0	NM_001361969	20362.0	Mm.274399	NM_033144	ENSMUSG00000018398	Sept8	AW046166|Sepl	septin 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-88745431-4	chr1	88745335	88745535	+	782.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9455.0	NR_040493	78650.0	Mm.243767	NR_040493	ENSMUSG00000097398	Platr5	2410088K16Rik	pluripotency associated transcript 5	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-137783946-2	chr5	137783846	137784046	+	788.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144913, intron 1 of 3)	intron (NM_144913, intron 1 of 3)	2755.0	NM_144913	231803.0	Mm.61193	NM_144913	ENSMUSG00000029726	Mepce	Bcdin3|D5Wsu46e	methylphosphate capping enzyme	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-59809212-4	chr11	59809097	59809297	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045686)	promoter-TSS (NR_045686)	404.0	NM_001271357	216805.0	Mm.339640	NM_146018	ENSMUSG00000032633	Flcn	AU014660|B430214A04Rik|Bhd|FLCL	folliculin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-28869371-3	chr6	28869272	28869472	+	871.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019776, intron 16 of 23)	intron (NM_019776, intron 16 of 23)	-37625.0	NM_138682	192198.0	Mm.443660	NM_138682	ENSMUSG00000049939	Lrrc4	MBAG1|NGL-2|NGL2|NLG-2|Nag14	leucine rich repeat containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-60788697-2	chr14	60788597	60788797	+	766.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027436, intron 3 of 18)	MTD|LTR|ERVL-MaLR	4131.0	NR_040642	70478.0	Mm.274650	NM_027436	ENSMUSG00000021993	Mipep	5730405E07Rik|MIP	mitochondrial intermediate peptidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-112851784-2	chr12	112851684	112851884	+	831.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_019925, exon 3 of 3)	3' UTR (NM_019925, exon 3 of 3)	9132.0	NM_019925	56696.0	Mm.20455	NM_019925	ENSMUSG00000021298	Gpr132	G2a	G protein-coupled receptor 132	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-80402141-4	chr1	80402028	80402228	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43804.0	NR_040460	72208.0	Mm.396181	NR_040460	ENSMUSG00000101483	1700016L21Rik	CD11c-DTR|DCKO|DTR-GFP|DTR-GRP|Jr3|Tg(Itgax-DTR/EGFP)57Lan	RIKEN cDNA 1700016L21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119046586-2	chr11	119046486	119046686	+	702.916687	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-5673.0	NM_013926	30951.0	Mm.99953	NM_013926	ENSMUSG00000025578	Cbx8	Pc3	chromobox 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-67831540-3	chr5	67831500	67831700	+	704.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038999, intron 1 of 36)	intron (NM_001038999, intron 1 of 36)	15831.0	NM_009727	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-88220474-2	chr1	88220374	88220574	+	721.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_201641)	TTS (NM_201641)	-6546.0	NM_001281466	100040766.0	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	Heatr7b1	maestro heat-like repeat family member 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-5361650-2	chr6	5361550	5361750	+	984.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-21736.0	NM_023048	65255.0	Mm.51340	NM_023048	ENSMUSG00000042607	Asb4	8430401O13Rik|AV117194|AW060255	ankyrin repeat and SOCS box-containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-134556386-4	chr1	134556279	134556479	+	843.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-3799.0	NM_152895	75605.0	Mm.28995	NM_152895	ENSMUSG00000042207	Kdm5b	2010009J12Rik|2210016I17Rik|AW556288|D1Ertd202e|Jarid1b|PLU-1|PUT1|Plu1|RBBP2H1A|Rb-Bp2|mKIAA4034	lysine (K)-specific demethylase 5B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27624551-2	chr2	27624451	27624651	+	655.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52650.0	NM_011305	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-144892240-2	chr7	144892103	144892303	+	629.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4329.0	NM_008003	14170.0	Mm.3904	NM_008003	ENSMUSG00000031073	Fgf15	FGF19	fibroblast growth factor 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16399638-2	chr7	16399542	16399742	+	1000.0	f0_balb.idr|f0_c57.idr	Intergenic	CpG	-1554.0	NM_198631	330474.0	Mm.333594	NM_198631	ENSMUSG00000059273	Zc3h4	Bwq1|Gm768|Kiaa1064-hp|mKIAA1064	zinc finger CCCH-type containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-31880619-4	chr5	31880531	31880731	+	972.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144541, intron 6 of 11)	MTD|LTR|ERVL-MaLR	182581.0	NM_144541	107976.0	Mm.482126	NM_144541	ENSMUSG00000052139	Babam2	6030405P19Rik|AI429776|B830038C02Rik|Bre	BRISC and BRCA1 A complex member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-38558126-2	chr5	38558026	38558226	+	709.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011715, intron 2 of 14)	intron (NM_011715, intron 2 of 14)	3469.0	NM_011715	22388.0	Mm.2654	NM_011715	ENSMUSG00000005103	Wdr1	Aip1|D5Wsu185e|rede	WD repeat domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-76579110-1	chr11	76579010	76579210	+	724.0	f0_balb.idr	Intergenic	Intergenic	-1371.0	NM_198894	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	1.01099407329654	3.0647333014133	1.63997134696894	1.35393246247017	1.84701804570026	3.22626228654417	1.11293179690892	2.88192416128587	0.914196429343027	0.410832977984743	0.894256659801134
Merged-chr8-121588834-2	chr8	121588734	121588934	+	550.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur2|SINE|Alu	-1634.0	NM_026160	67443.0	Mm.28357	NM_026160	ENSMUSG00000031812	Map1lc3b	1010001C15Rik|Atg8|LC3b|Map1lc3	microtubule-associated protein 1 light chain 3 beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-85521145-4	chr11	85521023	85521223	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138681, intron 16 of 25)	intron (NM_138681, intron 16 of 25)	167959.0	NM_001166643	192197.0	Mm.209989	NM_138681	ENSMUSG00000059439	Bcas3	1500019F07Rik|2610028P08Rik|AU021018|BC028339|K20D4|rudhira	breast carcinoma amplified sequence 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140444436-2	chr5	140444336	140444536	+	703.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	17097.0	NR_106005	102466792.0		NR_106005	ENSMUSG00000098319	Mir7038	Gm27955|mmu-mir-7038	microRNA 7038	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-39266766-4	chr10	39266676	39266876	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-102982.0	NM_001127376	327743.0	Mm.208111	NM_001127376	ENSMUSG00000062074	Wisp3	CCN6|Gm735|WISP-3	WNT1 inducible signaling pathway protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-94344826-2	chr8	94344730	94344930	+	569.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001205311, exon 15 of 25)	exon (NM_001205311, exon 15 of 25)	15622.0	NM_001205311	20497.0	Mm.25804	NM_019415	ENSMUSG00000031766	Slc12a3	AI035291|NCC|NCCT|TSC	solute carrier family 12, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-61251888-4	chr9	61251796	61251996	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41913.0	NR_045334	622037.0	Mm.126243	NR_045334	ENSMUSG00000111658	B930092H01Rik	-	RIKEN cDNA B930092H01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-86484491-4	chr17	86484394	86484594	+	860.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011104, intron 6 of 14)	intron (NM_011104, intron 6 of 14)	-197316.0	NR_045435	72104.0	Mm.443401	NR_045435	ENSMUSG00000100738	2010106C02Rik	-	RIKEN cDNA 2010106C02 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-107330806-3	chr3	107330668	107330868	+	739.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001045807, exon 1 of 2)	exon (NM_001045807, exon 1 of 2)	2521.0	NM_001045807	229700.0	Mm.27966	NM_001045807	ENSMUSG00000048109	Rbm15	C230088J01Rik|mKIAA1438	RNA binding motif protein 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-61042424-2	chr9	61042324	61042524	+	932.8333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25355.0	NR_040767	330956.0	Mm.207985	NR_040767	ENSMUSG00000111290	Gm5122	A430102L10	predicted gene 5122	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64134181-4	chr5	64134128	64134328	+	839.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26032.0	NM_019636	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-129623930-4	chr6	129623842	129624042	+	996.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286018)	promoter-TSS (NM_001286018)	-78.0	NM_001286018	27007.0	Mm.8217	NM_033078	ENSMUSG00000030149	Klrk1	D6H12S2489E|NKG2-D|Nkg2d	killer cell lectin-like receptor subfamily K, member 1	protein-coding	4.2510158735489	5.62349802494265	3.91120696030993	4.08165176704217	4.37650076974608	4.66740164833268	4.88513281676015	4.75069213041279	0.0316492669350165	0.943319371555378	0.998431161219273
Merged-chr18-77619985-2	chr18	77619885	77620085	+	584.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E-int|LTR|ERVL-MaLR	-54849.0	NM_001164504	225743.0	Mm.23293	NM_001164504	ENSMUSG00000025427	Rnf165	2900024M11Rik|AI427432|Akd2|Ark2c|G630064H08Rik|Gm96	ring finger protein 165	protein-coding	-2.18308165884198	-2.15547475440471	-2.16382331017202	-2.1706810624505	-2.18114370519566	-2.15366558754311	-2.03057248461154	-2.16945352807143	0.759018020146679	0.829933115115583	1
Merged-chr17-45593683-3	chr17	45593548	45593748	+	824.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199113)	promoter-TSS (NM_001199113)	-8.0	NM_001199113	63959.0	Mm.29744	NM_022880	ENSMUSG00000023942	Slc29a1	1200014D21Rik|AA407560|ENT1	solute carrier family 29 (nucleoside transporters), member 1	protein-coding	0.800461755334046	0.644540208861374	0.891215768771597	0.446349838034086	0.991874660590609	0.460094642888932	0.627053415627423	0.863493317190617	0.287868378346569	0.859415909240449	1
Merged-chr12-110770089-2	chr12	110769989	110770189	+	710.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347428, intron 1 of 2)	intron (NM_001347428, intron 1 of 2)	32157.0	NM_001347428	69641.0	Mm.475762	NM_027149	ENSMUSG00000037957	Wdr20	2310040A13Rik|AI549910|Wdr20a	WD repeat domain 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-25608436-4	chr2	25608299	25608499	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024616)	promoter-TSS (NM_001024616)	47.0	NM_001024616	227624.0	Mm.29600	NM_001024616	ENSMUSG00000015087	Rabl6	B230208H17Rik|Rbel1|Rbel1a|Rbel1b|parf	RAB, member RAS oncogene family-like 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-122125947-4	chr9	122125906	122126106	+	794.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357776, intron 1 of 5)	intron (NM_001357776, intron 1 of 5)	8547.0	NM_001357776	20623.0	Mm.257989	NM_133741	ENSMUSG00000038145	Snrk	2010012F07Rik|AI448042|AW547029|E030034B15|R74830|mKIAA0096	SNF related kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133584736-2	chr4	133584636	133584836	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_172876)	TTS (NM_172876)	363.0	NM_133884	100210.0	Mm.274001	NM_133884	ENSMUSG00000028848	Gpn2	AI838661|Atpbd1b|R74630	GPN-loop GTPase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-41523682-3	chr3	41523582	41523782	+	861.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_130791, intron 1 of 5)	RSINE1|SINE|B4	4792.0	NR_130791	78648.0	Mm.366093	NR_130791		2400006E01Rik	Gm43733|lncRNA-JADE	RIKEN cDNA 2400006E01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150080490-4	chr4	150080402	150080602	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7001.0	NM_177366	269604.0	Mm.219307	NM_177366	ENSMUSG00000047875	Gpr157	F730108M23Rik	G protein-coupled receptor 157	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45370246-2	chr7	45370146	45370346	+	705.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011698, intron 1 of 5)	CpG-13114	318.0	NM_011698	22342.0	Mm.20472	NM_011698	ENSMUSG00000003872	Lin7b	LIN-7B|MALS-2|Veli2	lin-7 homolog B (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-88702453-1	chr4	88702353	88702553	+	606.0	f0_balb.idr	Intergenic	Intergenic	-11185.0	NM_008336	15974.0	Mm.377093	NM_008336	ENSMUSG00000100079	Ifnab	-	interferon alpha B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-73289865-4	chr8	73289764	73289964	+	900.4833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010687, intron 1 of 14)	intron (NM_010687, intron 1 of 14)	63676.0	NM_001317391	16795.0	Mm.324371	NM_010687	ENSMUSG00000004383	Large1	BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd	LARGE xylosyl- and glucuronyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30411806-2	chr7	30411666	30411866	+	842.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2022.0	NM_011662	22177.0	Mm.46301	NM_011662	ENSMUSG00000030579	Tyrobp	DAP12|KARAP|Ly83	TYRO protein tyrosine kinase binding protein	protein-coding	0.250429976623761	1.53943893771197	0.273632058412471	0.921616365409456	0.252628080478039	0.287021348144724	0.276066196668644	0.929840590771444	-1.87700603389918	0.329734527024902	0.831942889324137
Merged-chr8-108981671-4	chr8	108981558	108981758	+	695.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F2-int|LTR|ERVL-MaLR	44798.0	NR_037295	100526511.0		NR_037295	ENSMUSG00000093241	Mir3108	mir-3108|mmu-mir-3108	microRNA 3108	ncRNA	0.379851562442175	-0.0691121342178611	0.584839886840599	-0.0779165224666927	0.292761227478374	-0.0679906239227999	-0.0729879515374804	-0.0772472207680198	-1.71560230829527	0.460419219048017	1
Merged-chr9-55938167-4	chr9	55938069	55938269	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081341)	promoter-TSS (NM_001081341)	-50.0	NM_001081341	244891.0	Mm.86588	NM_175536	ENSMUSG00000034007	Scaper	C430017I08|D530014O03Rik|Zfp291	S phase cyclin A-associated protein in the ER	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-46039235-4	chr4	46039129	46039329	+	966.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021883)	promoter-TSS (NM_021883)	7.0	NM_021883	21916.0	Mm.249594	NM_021883	ENSMUSG00000028328	Tmod1	E-Tmod|Tmod	tropomodulin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-98307470-3	chr7	98307353	98307553	+	930.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360615, intron 1 of 10)	intron (NM_001360615, intron 1 of 10)	2089.0	NM_001360616	66190.0	Mm.334041	NM_025408	ENSMUSG00000030760	Acer3	1110057L18Rik|5430429L08Rik|AV015045|Phca|aPHC	alkaline ceramidase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-4133730-6	chr12	4133797	4133997	+	870.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138305)	promoter-TSS (NM_138305)	-256.0	NM_138305	104111.0	Mm.489807	NM_138305	ENSMUSG00000020654	Adcy3	AC3|mKIAA0511	adenylate cyclase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-132570987-3	chr2	132570889	132571089	+	745.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355651, intron 2 of 19)	B2_Mm2|SINE|B2	7259.0	NM_001291050	74182.0	Mm.211211	NM_027096	ENSMUSG00000027346	Gpcpd1	2310004G06Rik|2310032D16Rik|AU015213|Gde5|Prei4|mKIAA1434	glycerophosphocholine phosphodiesterase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-20697275-4	chr18	20697164	20697364	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019737, intron 5 of 8)	intron (NM_019737, intron 5 of 8)	-32004.0	NR_155534	102633478.0		NR_155534	ENSMUSG00000085595	Gm16090	-	predicted gene 16090	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-60699049-2	chr13	60698949	60699149	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 3 of 26)	intron (NM_134062, intron 3 of 26)	87315.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-5013591-4	chr16	5013480	5013680	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133185)	promoter-TSS (NM_133185)	-27.0	NM_133185	66049.0	Mm.27792	NM_133185	ENSMUSG00000022540	Rogdi	0610011C19Rik|AU020118|C76152|Lzf	rogdi homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-3344515-4	chr6	3344419	3344619	+	942.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55052.0	NM_010156	209086.0	Mm.196013	NM_010156	ENSMUSG00000047735	Samd9l	AA175286|ESTM25|mKIAA2005	sterile alpha motif domain containing 9-like	protein-coding	5.48757059809036	5.74065672207975	5.8389334441751	4.71043996896759	5.19493924363338	5.99201049744206	5.29535658547343	3.90360753499548	-0.268227313238	0.494732841426927	0.935679785535167
Merged-chr9-110304627-2	chr9	110304527	110304727	+	698.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081381)	promoter-TSS (NM_001081381)	-565.0	NM_001081381	72341.0	Mm.374250	NM_001081381	ENSMUSG00000054836	Elp6	2610001P13Rik|2610002I17Rik|AV159994|Tmem103	elongator acetyltransferase complex subunit 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-31045955-2	chr7	31045855	31046055	+	781.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_022007, intron 2 of 5)	B2_Mm2|SINE|B2	-3624.0	NM_001287217	18301.0	Mm.1870	NM_008761	ENSMUSG00000009687	Fxyd5	EF-8|Oit2|RIC	FXYD domain-containing ion transport regulator 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-96806867-2	chr5	96806764	96806964	+	574.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013470, intron 2 of 12)	intron (NM_013470, intron 2 of 12)	13479.0	NM_013470	11745.0	Mm.7214	NM_013470	ENSMUSG00000029484	Anxa3	Anx3	annexin A3	protein-coding	2.12437519839974	1.71374881337276	1.23230079018549	2.33048105528399	1.55735858563462	2.05059602494346	2.10941561033778	2.42607346822624	0.384119466986739	0.704728626966288	0.998431161219273
Merged-chr8-56305395-4	chr8	56305315	56305515	+	918.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008278, intron 3 of 6)	Lx7|LINE|L1	10863.0	NM_008278	15446.0	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-40760554-4	chr9	40760490	40760690	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133733, intron 1 of 6)	intron (NM_133733, intron 1 of 6)	-40683.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	5.14042602229558	5.03643123131814	6.294202201351	5.16814220206002	5.52390020928442	6.01914169071208	6.49756131873124	5.31813678153153	0.444679362881944	0.2002841338425	0.684098226753363
Merged-chr8-72583257-3	chr8	72583162	72583362	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357280, intron 4 of 4)	ORR1D2|LTR|ERVL-MaLR	11439.0	NM_001357279	74166.0	Mm.212927	NM_144534	ENSMUSG00000031791	Tmem38a	1110001E17Rik|AI413399|SPR-27|TRIC-A|mg33a	transmembrane protein 38A	protein-coding	3.71705426804782	3.88208310546971	2.95065666756301	4.30803650972583	1.29160977406112	3.30183075832475	2.01216219355052	1.38446646269033	-2.50164374562264	0.0492987387227648	0.32321653945122
Merged-chr16-76765304-4	chr16	76765200	76765400	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155453, intron 1 of 3)	intron (NR_155453, intron 1 of 3)	13792.0	NR_155453	102632814.0		NR_155453	ENSMUSG00000109333	Gm30790	Gm45028	predicted gene, 30790	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-34701664-4	chr12	34701576	34701776	+	879.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271386, intron 3 of 27)	intron (NM_001271386, intron 3 of 27)	-172787.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	-0.816218585096763	-0.807706221360484	-0.810513252707416	-0.812664745146179	-0.556259060037822	-0.805128487057136	-0.365163929532627	-0.652990383085774	3.01543681827889	0.276094528624006	1
Merged-chr10-45276619-4	chr10	45276478	45276678	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12727.0	NM_024286	78977.0	Mm.24748	NM_024286	ENSMUSG00000019848	Popdc3	AA682104|Pop3	popeye domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-12294545-4	chr12	12294438	12294638	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029758, intron 2 of 12)	intron (NM_029758, intron 2 of 12)	32399.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-38364060-2	chr15	38363960	38364160	+	797.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63349.0	NM_001289471	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31387423-2	chr14	31387323	31387523	+	969.5714109999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347585, intron 3 of 7)	intron (NM_001347585, intron 3 of 7)	30254.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-77905181-2	chr2	77905081	77905281	+	860.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030560, intron 18 of 20)	intron (NM_030560, intron 18 of 20)	41175.0	NM_001290740	80744.0	Mm.288151	NM_030560	ENSMUSG00000027014	Cwc22	AA684037|AI173004|AL022752|B230213M24|mKIAA1604	CWC22 spliceosome-associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-32138012-2	chr5	32137912	32138112	+	796.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008037, intron 1 of 3)	intron (NM_008037, intron 1 of 3)	1540.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-50377129-3	chr6	50377005	50377205	+	735.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163645, intron 2 of 21)	intron (NM_001163645, intron 2 of 21)	5732.0	NM_027881	71720.0	Mm.44153	NM_027881	ENSMUSG00000029822	Osbpl3	1200014M06Rik|6720421I08Rik|A530055M08|ORP-3|ORP3|OSBP3	oxysterol binding protein-like 3	protein-coding	0.0824884183889538	0.101434999440775	0.095246233069001	0.636728076738884	0.578244031493356	0.102827756929397	0.096612667812357	0.832687804796336	1.25485813075084	0.563264803766164	1
Merged-chr17-67157104-3	chr17	67157002	67157202	+	884.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 2 of 32)	intron (NM_001357625, intron 2 of 32)	-130867.0	NR_049205	100885844.0		NR_049205	ENSMUSG00000093508	Mir5709	Gm22041|mir-5709|mmu-mir-5709	microRNA 5709	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-121089890-3	chr7	121089833	121090033	+	848.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139310, intron 1 of 28)	L1MEc|LINE|L1	6495.0	NM_139310	246190.0	Mm.221073	NM_139310	ENSMUSG00000034990	Otoa	-	otoancorin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-84683312-2	chr18	84683212	84683412	+	805.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023149, intron 1 of 11)	ID_B1|SINE|B4	-1253.0	NM_001289531	66054.0	Mm.29646	NM_023149	ENSMUSG00000024644	Cndp2	0610010E05Rik|C76600|Cn2|Dip-2|Pep-1|Pep1	CNDP dipeptidase 2 (metallopeptidase M20 family)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-94598890-1	chr14	94598790	94598990	+	567.0	f1_c57bl6.idr	Intergenic	Lx3_Mus|LINE|L1	-708211.0	NM_001346722	211712.0	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding	0.561631090733837	0.609918559099977	1.74147090228242	0.801949952658726	1.49744905667481	0.613325529864092	1.75960032711639	0.584552582811384	0.632255973751213	0.696854366581203	0.997929106458421
Merged-chr1-134302929-4	chr1	134302823	134303023	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001144855, intron 25 of 28)	intron (NM_001144855, intron 25 of 28)	12919.0	NM_031189	17928.0	Mm.16528	NM_031189	ENSMUSG00000026459	Myog	MYF4|bHLHc3|myo	myogenin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-102660527-4	chr14	102660426	102660626	+	871.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	322106.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150426261-2	chr4	150426161	150426361	+	638.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 2 of 22)	intron (NM_001085492, intron 2 of 22)	144345.0	NM_001085492	68703.0	Mm.291274	NM_001085492	ENSMUSG00000039852	Rere	1110033A15Rik|AI414665|ARG|ARP|ATN1L|AW742570|Atr2|DNB1|eye<m03Jus>|eyes3|mKIAA0458	arginine glutamic acid dipeptide (RE) repeats	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-67342281-4	chr17	67342234	67342434	+	876.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	RMER15|LTR|ERVL	12125.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-58466668-3	chr4	58466558	58466758	+	893.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172989, intron 3 of 3)	intron (NM_172989, intron 3 of 3)	-25560.0	NR_037278	100526502.0		NR_037278	ENSMUSG00000093293	Mir3095	mir-3095|mmu-mir-3095	microRNA 3095	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100215517-3	chr7	100215418	100215618	+	726.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12089.0	NM_027629	70974.0	Mm.440524	NM_027629	ENSMUSG00000030729	Pgm2l1	4931406N15Rik|AI553438|BM32A	phosphoglucomutase 2-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127259249-2	chr7	127259149	127259349	+	687.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023203, intron 2 of 2)	L2c|LINE|L2	1418.0	NM_023203	66422.0	Mm.29898	NM_023203	ENSMUSG00000042462	Dctpp1	2410015N17Rik|AI854235|RS21-C6	dCTP pyrophosphatase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-128608294-3	chr1	128608195	128608395	+	933.8777470000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15996.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	0.136402606670805	0.666128068526266	0.150066651883032	0.144943997103607	0.536561878692706	0.158170721189405	0.950420141216101	0.319779257161167	1.54735437964937	0.439507847349791	1
Merged-chr5-123391162-2	chr5	123391062	123391262	+	838.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3636.0	NM_133917	208104.0	Mm.83277	NM_133917	ENSMUSG00000038342	Mlxip	AW228700|Mir|bHLHe36	MLX interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-29969769-2	chr14	29969669	29969869	+	706.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019979, intron 1 of 4)	intron (NM_019979, intron 1 of 4)	1389.0	NM_019979	80795.0	Mm.104491	NM_019979	ENSMUSG00000042682	Selenok	1110001C03Rik|AA673253|HSPC030|Hsp30|Selk	selenoprotein K	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-20232995-5	chr12	20232720	20232920	+	861.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MMERGLN-int|LTR|ERV1	582959.0	NR_015521	69513.0	Mm.273972	NR_015521	ENSMUSG00000099759	1700030C10Rik	-	RIKEN cDNA 1700030C10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-61204177-4	chr10	61204074	61204274	+	857.133301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081127, intron 18 of 21)	intron (NM_001081127, intron 18 of 21)	28912.0	NM_023064	65971.0	Mm.30227	NM_023064	ENSMUSG00000020096	Tbata	1700021K02Rik|AI428928|Spatial|Titest	thymus, brain and testes associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-17549128-4	chr17	17549013	17549213	+	840.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172827, intron 11 of 17)	intron (NM_172827, intron 11 of 17)	75376.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	2.94825766720826	3.04612151387418	2.22324784075349	2.865579315252	2.90112002217201	2.4789199543048	2.05750752456465	2.9643241999075	-0.29434687105967	0.689580623857948	0.996533206832645
Merged-chr17-71133864-2	chr17	71133764	71133964	+	720.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49668.0	NM_001357791	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-30067023-4	chr16	30066944	30067144	+	980.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008235, exon 4 of 4)	exon (NM_008235, exon 4 of 4)	1687.0	NM_008235	15205.0	Mm.390859	NM_008235	ENSMUSG00000022528	Hes1	Hry|bHLHb39	hes family bHLH transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85648177-4	chr12	85648093	85648293	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-38527.0	NM_016767	53314.0	Mm.6672	NM_016767	ENSMUSG00000034266	Batf	B-ATF|SFA-2	basic leucine zipper transcription factor, ATF-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-110747625-3	chr13	110747529	110747729	+	907.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-155870.0	NR_131193	75139.0	Mm.490931	NR_131193	ENSMUSG00000114472	Gm38397	-	predicted gene, 38397	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-63124329-4	chr9	63124235	63124435	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22645.0	NM_172446	207667.0	Mm.36349	NM_172446	ENSMUSG00000022245	Skor1	AV273001|C230094B15Rik|Corl1|Lbxcor1	SKI family transcriptional corepressor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-134048943-2	chr1	134048843	134049043	+	853.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_021355)	TTS (NM_021355)	11689.0	NM_021355	14264.0	Mm.287146	NM_021355	ENSMUSG00000041559	Fmod	AI131919|AU041740|FM|SLRR2E	fibromodulin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-76483395-2	chr11	76483295	76483495	+	572.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346670, intron 2 of 21)	intron (NM_001346670, intron 2 of 21)	11100.0	NM_001346670	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	-1.84249666652287	-1.81280314203583	-1.821782708929	-1.8291587925341	-1.69912265473888	-1.81085723243092	-1.81974993181089	-1.68654889582706	1.42917657148143	0.685329973313288	1
Merged-chr13-9454540-4	chr13	9454445	9454645	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081426, intron 1 of 36)	intron (NM_001081426, intron 1 of 36)	178020.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-17448000-3	chr17	17447908	17448108	+	796.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025681, intron 4 of 5)	MIR|SINE|MIR	45322.0	NM_025681	66643.0	Mm.268018	NM_025681	ENSMUSG00000047786	Lix1	5730466L18Rik	limb and CNS expressed 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-34532664-2	chr15	34532564	34532764	+	618.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37353.0	NM_152894	67724.0	Mm.248779	NM_026340	ENSMUSG00000022325	Pop1	4932434G09Rik	processing of precursor 1, ribonuclease P/MRP family, (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-57590998-4	chr19	57590904	57591104	+	914.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20030.0	NM_181415	226255.0	Mm.245340	NM_181415	ENSMUSG00000054843	Atrnl1	AI504415|AW555641|Alp|Atrnl|Atrnlp	attractin like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-46341438-4	chr17	46341339	46341539	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-13416.0	NM_170680	224814.0	Mm.76543	NM_145140	ENSMUSG00000032842	Abcc10	Mrp7|mFLJ00002	ATP-binding cassette, sub-family C (CFTR/MRP), member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-48034590-2	chr4	48034490	48034690	+	577.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10715.0	NM_015743	18124.0	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-58570590-1	chr18	58570490	58570690	+	546.0	f0_balb.idr	intron (NM_001081072, intron 1 of 9)	intron (NM_001081072, intron 1 of 9)	14350.0	NM_001081072	225579.0	Mm.258517	NM_001081072	ENSMUSG00000024600	Slc27a6	4732438L20Rik|FACVL2|FATP6|VLCS-H1	solute carrier family 27 (fatty acid transporter), member 6	protein-coding	1.6659209345523	1.19549982696961	1.71615839503781	1.14062078950072	1.68053816563973	1.20234175179948	1.73054529200054	1.14487131944934	0.0399645906559324	0.973109083867124	0.998431161219273
Merged-chr8-85514663-2	chr8	85514563	85514763	+	933.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_173866, intron 6 of 11)	intron (NM_173866, intron 6 of 11)	22046.0	NM_173866	108682.0	Mm.200423	NM_173866	ENSMUSG00000031700	Gpt2	4631422C05Rik|ALT2|AU014768|AU041193|C87201	glutamic pyruvate transaminase (alanine aminotransferase) 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-30510561-2	chr18	30510461	30510661	+	753.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	237696.0	NR_151699	225326.0	Mm.194127	NM_181414	ENSMUSG00000033628	Pik3c3	5330434F23Rik|Vps34	phosphatidylinositol 3-kinase catalytic subunit type 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70806092-2	chr11	70805992	70806192	+	776.083313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001045526, intron 1 of 4)	L2b|LINE|L2	6469.0	NM_001045526	327957.0	Mm.164325	NM_001045526	ENSMUSG00000057135	Scimp	A430084P05Rik	SLP adaptor and CSK interacting membrane protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-86170401-4	chr15	86170308	86170508	+	983.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145475, intron 1 of 12)	intron (NM_145475, intron 1 of 12)	-15320.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41328135-2	chr19	41328035	41328235	+	718.166687	f1_balb.idr|f1_c57bl6.idr	exon (NM_031376, exon 5 of 17)	exon (NM_031376, exon 5 of 17)	56935.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-13912476-4	chr14	13912435	13912635	+	816.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TTTTG)n|Simple_repeat|Simple_repeat	48778.0	NM_001285780	66231.0	Mm.295875	NM_025435	ENSMUSG00000053453	Thoc7	Nif3l1bp1	THO complex 7	protein-coding	-1.84371485578039	-1.81332821174849	-1.82251738371298	-1.83006564316449	-1.84158176955426	-1.81133687985023	-1.5312619047181	-1.82871450833159	1.60090129203521	0.64914985597185	1
Merged-chr3-84922015-6	chr3	84921928	84922128	+	883.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177774, intron 3 of 12)	intron (NM_001177774, intron 3 of 12)	-30183.0	NM_080428	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-66502171-3	chr18	66502103	66502303	+	944.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1975.0	NR_040528	100503565.0	Mm.98256	NR_040528		Gm9926	-	predicted gene 9926	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-72263846-4	chr5	72263737	72263937	+	997.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_003966, intron 11 of 22)	intron (NR_003966, intron 11 of 22)	60494.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-16659626-4	chr1	16659532	16659732	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_037998, exon 1 of 4)	non-coding (NR_037998, exon 1 of 4)	2080.0	NR_037998	329101.0	Mm.406049	NR_037998	ENSMUSG00000097744	D030040B21Rik	D030040B21	RIKEN cDNA D030040B21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-53876824-3	chr1	53876726	53876926	+	585.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001883, intron 17 of 28)	intron (NM_001001883, intron 17 of 28)	27402.0	NR_106149	102465783.0		NR_106149	ENSMUSG00000098443	Mir7681	Gm27806|mmu-mir-7681	microRNA 7681	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-69136044-4	chr14	69135937	69136137	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35765.0	NM_010920	18092.0	Mm.390691	NM_010920	ENSMUSG00000044186	Nkx2-6	AV044928|Nkx-2.6|Nkx2.6|Tix|tinman	NK2 homeobox 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-30244392-2	chr14	30244292	30244492	+	594.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083616, intron 3 of 46)	intron (NM_001083616, intron 3 of 46)	109094.0	NM_001302637	12289.0	Mm.9772	NM_028981	ENSMUSG00000015968	Cacna1d	8430418G19Rik|C79217|Cach3|Cacn4|Cacnl1a2|Cav1.3|Cchl1a|Cchl1a2|D-LTCC	calcium channel, voltage-dependent, L type, alpha 1D subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-44405296-2	chr11	44405196	44405396	+	649.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001303244, intron 2 of 7)	intron (NM_001303244, intron 2 of 7)	5233.0	NM_001303244	16160.0	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-111626097-4	chr8	111625978	111626178	+	734.845825	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001168623)	TTS (NM_001168623)	4244.0	NM_027570	52815.0	Mm.27589	NM_027570	ENSMUSG00000031958	Ldhd	4733401P21Rik|D8Bwg1320e	lactate dehydrogenase D	protein-coding	0.60320933997544	0.259057377973137	0.802523852736656	0.54176784383035	0.241965949272147	0.744295220133376	0.254393802460572	0.409695747863546	-0.928245804154717	0.614862463256825	1
Merged-chr11-34010391-4	chr11	34010296	34010496	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155520, intron 4 of 4)	intron (NR_155520, intron 4 of 4)	-17203.0	NM_001190886	70357.0	Mm.252514	NM_027398	ENSMUSG00000053519	Kcnip1	KCHIP1|Kchip1.2	Kv channel-interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101609915-1	chr7	101609815	101610015	+	757.0	f1_balb.idr	Intergenic	Lx3C|LINE|L1	-28754.0	NM_019915	11872.0	Mm.57008	NM_019915	ENSMUSG00000030651	Art2b	ART2.2|ARTC2|Art|Ly92b|Rt-6|Rt6|Rt6-2	ADP-ribosyltransferase 2b	protein-coding	1.47366289495967	0.619534185635848	1.17746571317759	1.13475843487238	0.576460655666738	0.622796195764417	0.608116397222749	1.96713853612698	0.00323117589306652	0.998398170873933	0.999479715059607
Merged-chr6-85339504-2	chr6	85339404	85339604	+	869.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177466, intron 3 of 4)	intron (NM_177466, intron 3 of 4)	-3131.0	NR_030486	735267.0		NR_030486	ENSMUSG00000076012	Mir705	Mirn705|mmu-mir-705	microRNA 705	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-95154832-2	chr14	95154732	95154932	+	584.166626	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	-726422.0	NM_001358241	66732.0	Mm.75060	NM_025733	ENSMUSG00000034689	4921530L21Rik	-	RIKEN cDNA 4921530L21 gene	protein-coding	2.66405071868042	2.53130736766165	3.65649052602084	3.78068508159805	1.76668929483196	2.21404818004237	2.13285799637938	1.6399167026394	-2.64802615958911	0.00103525745657015	0.0199909103496706
Merged-chr8-69790571-2	chr8	69790471	69790671	+	630.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133224)	promoter-TSS (NM_133224)	-592.0	NM_133224	170759.0	Mm.186066	NM_133224	ENSMUSG00000031862	Atp13a1	Atp13a|Cgi152|catp	ATPase type 13A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4034558-2	chr19	4034458	4034658	+	787.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_013541)	TTS (NM_013541)	3354.0	NM_013541	14870.0	Mm.299292	NM_013541	ENSMUSG00000060803	Gstp1	GstpiB	glutathione S-transferase, pi 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-12381804-2	chr15	12381704	12381904	+	631.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081064, intron 18 of 23)	RSINE1|SINE|B4	60308.0	NM_025673	66629.0	Mm.157655	NM_025673	ENSMUSG00000022200	Golph3	4733401N08Rik|5730410D03Rik|AW413496	golgi phosphoprotein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-7207590-4	chr10	7207483	7207683	+	961.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172546, intron 1 of 12)	intron (NM_172546, intron 1 of 12)	4654.0	NM_172546	215748.0	Mm.37984	NM_172546	ENSMUSG00000015202	Cnksr3	6820402C05|BC024086|Magi1	Cnksr family member 3	protein-coding	2.85276655286767	3.33306166689438	2.61909833537103	1.90874284412668	1.82009602640225	1.32611606672639	2.42098078870848	1.51755723217716	-2.04743808354415	0.0264790091575474	0.217897909377403
Merged-chr12-56405036-4	chr12	56404944	56405144	+	874.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59150.0	NM_145442	217588.0	Mm.25656	NM_145442	ENSMUSG00000021028	Mbip	4933408E06Rik	MAP3K12 binding inhibitory protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-80477623-2	chr11	80477490	80477690	+	797.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_009871, exon 1 of 1)	exon (NM_009871, exon 1 of 1)	567.0	NM_009871	12569.0	Mm.142275	NM_009871	ENSMUSG00000048895	Cdk5r1	Cdk5r|D11Bwg0379e|p25|p35	cyclin-dependent kinase 5, regulatory subunit 1 (p35)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-79963195-2	chr10	79963095	79963295	+	851.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 2 of 4)	B1_Mur3|SINE|Alu	3043.0	NM_175450	216156.0	Mm.35828	NM_175450	ENSMUSG00000035754	Wdr18	2310012I10Rik|AU044733|AW122032	WD repeat domain 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-31971655-2	chr19	31971555	31971755	+	849.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CAGAGA)n|Simple_repeat|Simple_repeat	102894.0	NM_001081074	69865.0	Mm.87538	NM_001081074	ENSMUSG00000052595	A1cf	1810073H04Rik|ACF64|ACF65|ASP|Acf|MCM|MerCreMer|Tg(Myh6-cre/Esr1*)1Jmk|mer	APOBEC1 complementation factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-13104903-4	chr8	13104817	13105017	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146207)	promoter-TSS (NM_146207)	426.0	NM_178708	234069.0	Mm.103427	NM_178708	ENSMUSG00000038542	Pcid2	A730042J05Rik	PCI domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-70329257-4	chr16	70329166	70329366	+	915.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028803, intron 1 of 15)	intron (NM_028803, intron 1 of 15)	15317.0	NM_028803	74185.0	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-81015007-4	chr8	81014908	81015108	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027554)	promoter-TSS (NM_027554)	-102.0	NM_027554	74841.0	Mm.246018	NM_027554	ENSMUSG00000038250	Usp38	4631402N15Rik|4833420O05Rik|AA536967|AU044701|AW544820|mKIAA1891	ubiquitin specific peptidase 38	protein-coding	7.02447610883852	6.95527892979808	7.42753207332847	6.37635442821579	7.31197434291925	6.92823219375457	7.50637118603674	7.16742007197123	0.266321667956409	0.204338257135734	0.69167790036705
Merged-chr1-152599513-4	chr1	152599436	152599636	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346119, intron 2 of 17)	intron (NM_001346119, intron 2 of 17)	25681.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-61374791-2	chr18	61374691	61374891	+	638.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133249, intron 1 of 11)	intron (NM_133249, intron 1 of 11)	23109.0	NR_029879	723889.0		NR_029879	ENSMUSG00000105200	Mir378a	Mir378|Mirn378|mmu-mir-378|mmu-mir-378a	microRNA 378a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-64633590-4	chr14	64633490	64633690	+	933.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18941.0	NM_001081177	16554.0	Mm.23611	NM_001081177	ENSMUSG00000060012	Kif13b	5330429L19Rik|6030414C01|AI429803|C130021D12Rik|GAKIN	kinesin family member 13B	protein-coding	0.0264199610646717	0.673131690059571	0.0387509362086933	0.68014124183497	0.0275679465246157	0.0460794798887356	0.0400717480523943	0.477923830858562	-1.68631584434395	0.448192741531406	1
Merged-chr4-141681981-4	chr4	141681884	141682084	+	978.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3732.0	NM_023544	69994.0	Mm.441022	NM_023544	ENSMUSG00000040715	Rsc1a1	1700027M01Rik|Rs1	regulatory solute carrier protein, family 1, member 1	protein-coding	0.618140019526269	0.857906772752083	0.372419639717468	0.781421668943283	0.9166307199816	0.380526476552882	0.696877932403402	0.368210515073077	-0.322720743647549	0.854046803257221	1
Merged-chr14-31019506-4	chr14	31019418	31019618	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153547)	promoter-TSS (NM_153547)	-187.0	NM_001359855	66923.0	Mm.27913	NM_025847	ENSMUSG00000042323	Pbrm1	2610016F04Rik|AI507524|BAF180|Pb1	polybromo 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91916816-4	chr16	91916712	91916912	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010587, exon 39 of 39)	3' UTR (NM_010587, exon 39 of 39)	14818.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-50849456-4	chr9	50849359	50849559	+	936.5166630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7465.0	NM_001034085	73699.0	Mm.7726	NM_028614	ENSMUSG00000032058	Ppp2r1b	2410091N08Rik|AI790395	protein phosphatase 2, regulatory subunit A, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-95840050-4	chr16	95839948	95840148	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040485, intron 3 of 3)	intron (NR_040485, intron 3 of 3)	58665.0	NR_040485	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41367372-4	chr19	41367286	41367486	+	985.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 2 of 16)	intron (NM_031376, intron 2 of 16)	17684.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	2.57948165713173	1.74714155225762	2.12267497615475	2.35839546275812	1.86337828575447	1.931749577836	1.51237771178891	1.81699075491877	-1.24093204343149	0.187625004276297	0.665152848350986
Merged-chr10-118819627-2	chr10	118819525	118819725	+	570.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	49278.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-31123428-6	chr8	31123291	31123491	+	923.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175136, intron 2 of 5)	intron (NM_175136, intron 2 of 5)	11545.0	NM_175136	68867.0	Mm.29532	NM_175136	ENSMUSG00000039328	Rnf122	1110063C11Rik	ring finger protein 122	protein-coding	4.04794314238365	3.54989854657751	3.34070183726997	3.75744942318672	2.6794277819868	1.79254673111842	3.69250759269162	3.99506761282789	-0.596543300104014	0.365293454808046	0.861036332257394
Merged-chr13-118387252-4	chr13	118387162	118387362	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021556)	promoter-TSS (NM_021556)	-10.0	NM_021556	59054.0	Mm.143810	NM_021556	ENSMUSG00000021731	Mrps30	2610020A16Rik|AA968347|PAP|Pdcd9	mitochondrial ribosomal protein S30	protein-coding	6.86592014210925	6.28513486062496	6.52443739152099	6.36893958022357	6.948609497985	6.90033779354115	6.4555835948844	6.6271914835755	0.226765642362179	0.273905247568564	0.777944066667103
Merged-chr16-32643867-4	chr16	32643768	32643968	+	774.270874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016788)	promoter-TSS (NM_016788)	-775.0	NM_001110147	51789.0	Mm.251115	NM_016788	ENSMUSG00000022791	Tnk2	Ack|Ack-1|Ack1|Cdgip|Pyk1	tyrosine kinase, non-receptor, 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-43575176-3	chr10	43575081	43575281	+	916.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3988.0	NM_009846	12484.0	Mm.29742	NM_009846	ENSMUSG00000047139	Cd24a	Cd24|HSA|Ly-52|nectadrin	CD24a antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-153750446-2	chr1	153750346	153750546	+	601.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011882, intron 1 of 8)	MIR|SINE|MIR	1020.0	NM_011882	24014.0	Mm.259254	NM_011882	ENSMUSG00000066800	Rnasel	E230029I04Rik	ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32857104-1	chr2	32857004	32857204	+	540.0	f1_balb.idr	Intergenic	B1_Mus2|SINE|Alu	-9867.0	NM_001113569	20910.0	Mm.278865	NM_009295	ENSMUSG00000026797	Stxbp1	AI317162|AI326233|MMS10-G|Ms10g|Munc-18a|Munc18-1|N-sec1|Rb-sec1|Sxtbp1|Unc18-1|Unc18h|nsec1	syntaxin binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-62044896-4	chr15	62044786	62044986	+	884.6416630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132746, intron 1 of 6)	intron (NR_132746, intron 1 of 6)	5629.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-71899249-2	chr9	71899149	71899349	+	553.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253865, intron 3 of 14)	intron (NM_001253865, intron 3 of 14)	-3153.0	NM_001253863	21406.0	Mm.171615	NM_011544	ENSMUSG00000032228	Tcf12	A130037E08Rik|ALF1|HEB|HEBAlt|HTF-4|HTF4|ME1|REB|bHLHb20	transcription factor 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128342470-4	chr2	128342351	128342551	+	972.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028590, intron 1 of 2)	intron (NR_028590, intron 1 of 2)	86900.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-24869892-4	chr10	24869796	24869996	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027347)	promoter-TSS (NM_027347)	-90.0	NM_001166416	70208.0	Mm.28020	NM_027347	ENSMUSG00000019984	Med23	130kDa|3000002A17Rik|Crsp3|ESTM7|Sur2|X83317|mKIAA1216	mediator complex subunit 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-72211757-1	chr1	72211657	72211857	+	543.0	f0_balb.idr	intron (NM_001357488, intron 1 of 5)	CpG	550.0	NM_001005423	381269.0	Mm.422636	NM_001005423	ENSMUSG00000039395	Mreg	Gm974|Wdt2|dsu	melanoregulin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-111081011-4	chr9	111080896	111081096	+	931.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23478.0	NM_001302376	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-51072175-4	chr13	51072083	51072283	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28544.0	NR_029463	77428.0	Mm.405630	NR_029463		9430083A17Rik	-	RIKEN cDNA 9430083A17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134196385-2	chr6	134196285	134196485	+	581.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 3 of 8)	intron (NM_001303102, intron 3 of 8)	160685.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-38212857-4	chr18	38212763	38212963	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3101.0	NM_029357	75599.0	Mm.36560	NM_029357	ENSMUSG00000051375	Pcdh1	2010005A06Rik|AI585920	protocadherin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31597658-4	chr14	31597560	31597760	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20277.0	NM_009937	382864.0	Mm.239821	NM_009937	ENSMUSG00000057606	Colq	A130034K24Rik	collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-34011509-2	chr1	34011391	34011591	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_133833)	promoter-TSS (NM_133833)	-334.0	NM_133833	13518.0	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-152881080-4	chr2	152880972	152881172	+	975.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001141976, exon 9 of 18)	exon (NM_001141976, exon 9 of 18)	16005.0	NR_049195	100885834.0		NR_049195	ENSMUSG00000093746	Mir5622	Gm24421|mmu-mir-5622	microRNA 5622	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-14159972-4	chr16	14159881	14160081	+	927.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081154)	promoter-TSS (NM_001081154)	355.0	NR_030252	723916.0		NR_030252	ENSMUSG00000070074	Mir484	Mirn484|mir-484|mmu-mir-484	microRNA 484	ncRNA	3.44389471363286	3.33188794040514	2.92347912839409	3.21494514488416	3.47106565456081	1.73376632463671	3.05515006778755	3.30921968042895	-0.313802327991141	0.644969664804116	0.983701068654072
Merged-chr13-92030889-4	chr13	92030790	92030990	+	962.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42848.0	NM_009027	19418.0	Mm.248630	NM_009027	ENSMUSG00000021708	Rasgrf2	6330417G04Rik|AW048350|Grf2|Ras-GRF2	RAS protein-specific guanine nucleotide-releasing factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-24629871-2	chr16	24629771	24629971	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 5 of 12)	intron (NM_178665, intron 5 of 12)	-91984.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-102338015-4	chr7	102337907	102338107	+	887.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009287, intron 1 of 11)	intron (NM_009287, intron 1 of 11)	70183.0	NM_009287	20866.0	Mm.645	NM_009287	ENSMUSG00000030987	Stim1	SIM	stromal interaction molecule 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-43674996-4	chr19	43674869	43675069	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145156)	promoter-TSS (NM_145156)	-88.0	NM_001356944	246696.0	Mm.23827	NM_145156	ENSMUSG00000040414	Slc25a28	Mfrn2|Mrs3/4	solute carrier family 25, member 28	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-101356266-4	chr4	101356165	101356365	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040708)	promoter-TSS (NR_040708)	-17.0	NR_040708	77866.0	Mm.137053	NR_040708	ENSMUSG00000086782	E130102H24Rik	-	RIKEN cDNA E130102H24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-91207568-3	chr10	91207499	91207699	+	596.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_151510)	TTS (NR_151510)	13020.0	NR_151510	102633753.0	Mm.416936	NR_151510		4930534H03Rik	-	RIKEN cDNA 4930534H03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-113122045-2	chr12	113121945	113122145	+	647.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346696, intron 6 of 19)	intron (NM_001346696, intron 6 of 19)	-18191.0	NM_024223	68337.0	Mm.133825	NM_024223	ENSMUSG00000006356	Crip2	0610010I23Rik|AW743261|C77570|CRP2|CRP4|Crp|ESP1|Hlp	cysteine rich protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-182421624-2	chr1	182421524	182421724	+	544.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173378, intron 1 of 17)	B4A|SINE|B4	12457.0	NM_173378	209456.0	Mm.287450	NM_173378	ENSMUSG00000026510	Trp53bp2	53BP2|AI746547|ASPP2|PPP1R13A|Tp53bp2|X98550	transformation related protein 53 binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-60746228-2	chr18	60746128	60746328	+	852.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001348146, intron 1 of 6)	intron (NM_001348146, intron 1 of 6)	518.0	NM_001348101	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-9238501-3	chr9	9238400	9238600	+	947.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045754, intron 2 of 3)	intron (NR_045754, intron 2 of 3)	513.0	NM_027823	71544.0	Mm.334955	NM_027823	ENSMUSG00000050730	Arhgap42	9030420J04Rik|BE136619	Rho GTPase activating protein 42	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-48042047-2	chr4	48041947	48042147	+	995.916626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3258.0	NM_015743	18124.0	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-54847113-4	chr18	54847031	54847231	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	143049.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-139578338-1	chr4	139578238	139578438	+	665.0	f1_c57bl6.idr	intron (NM_001205173, intron 1 of 8)	intron (NM_001205173, intron 1 of 8)	3618.0	NM_001205173	212632.0	Mm.30464	NM_183148	ENSMUSG00000041025	Iffo2	C79267	intermediate filament family orphan 2	protein-coding	1.23377027766124	0.362807729282961	0.35282889353918	0.701892193385158	0.509058373533721	0.365037379547128	0.355042347235049	1.42526706937712	0.19240813658481	0.915371504162539	1
Merged-chr2-127308797-2	chr2	127308697	127308897	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-27362.0	NM_010090	13537.0	Mm.4729	NM_010090	ENSMUSG00000027368	Dusp2	PAC1	dual specificity phosphatase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-37957443-2	chr3	37957343	37957543	+	580.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_040559, intron 2 of 3)	ORR1E|LTR|ERVL-MaLR	58630.0	NR_040559	626410.0	Mm.389417	NR_040559	ENSMUSG00000106461	Gm20755	-	predicted gene, 20755	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-119334504-4	chr9	119334395	119334595	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5545.0	NM_010851	17874.0	Mm.213003	NM_010851	ENSMUSG00000032508	Myd88	-	myeloid differentiation primary response gene 88	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124022546-4	chr5	124022446	124022646	+	981.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177876, intron 1 of 3)	intron (NM_177876, intron 1 of 3)	9714.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	2.42157755400434	4.29509461978076	2.81936773887996	3.5577628985703	3.47343537727783	4.60393635148136	3.60988179034804	3.65008253726203	0.647598885150814	0.287768233469554	0.793449317735943
Merged-chr14-45107242-4	chr14	45107142	45107342	+	998.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	112183.0	NM_172597	70561.0	Mm.28129	NM_172597	ENSMUSG00000021830	Txndc16	5730420B22Rik|C77647	thioredoxin domain containing 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-83682831-1	chr2	83682731	83682931	+	560.5	f0_c57.idr	Intergenic	Intergenic	38253.0	NM_026934	69082.0	Mm.27804	NM_026934	ENSMUSG00000027091	Zc3h15	1700006A17Rik|1810012H02Rik|2610312B22Rik|FM22|Ierepo4	zinc finger CCCH-type containing 15	protein-coding	3.80175936596796	2.47414906169027	3.48987443709645	3.67893802826868	2.96004481507632	1.5377750760082	1.48121173475982	2.72629829428853	-1.89540754344748	0.01830214883576	0.168693392122979
Merged-chr7-44590959-6	chr7	44590929	44591129	+	748.111084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001290682, exon 1 of 5)	exon (NM_001290682, exon 1 of 5)	143.0	NM_001290682	16504.0	Mm.40312	NM_008422	ENSMUSG00000062785	Kcnc3	KShIIID|Kcr2-3|Kv3.3	potassium voltage gated channel, Shaw-related subfamily, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-55080362-6	chr12	55080229	55080429	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028314)	promoter-TSS (NM_028314)	-167.0	NM_011899	24067.0	Mm.471968	NM_011899	ENSMUSG00000073079	Srp54a	54kDa|Srp54	signal recognition particle 54A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98962067-2	chr11	98961967	98962167	+	664.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001176528, intron 1 of 7)	intron (NM_001176528, intron 1 of 7)	1596.0	NM_001176528	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127525483-2	chr10	127525383	127525583	+	660.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_183297)	TTS (NM_183297)	-3039.0	NM_028230	108037.0	Mm.29890	NM_028230	ENSMUSG00000025403	Shmt2	2700043D08Rik|AA408223|AA986903|SHMT	serine hydroxymethyltransferase 2 (mitochondrial)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-59259956-4	chr4	59259852	59260052	+	818.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_105031)	promoter-TSS (NR_105031)	-99.0	NR_105031	101055769.0	Mm.421401	NR_105031		Gm12596	-	predicted gene 12596	ncRNA	0.487700639641039	1.65200738486353	0.512347610546928	0.867083912724845	0.950266677114352	1.24866491580736	0.730879489466601	0.504801850495924	-0.427626671236572	0.790597461374169	0.998431161219273
Merged-chr19-41293282-2	chr19	41293182	41293382	+	565.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 12 of 16)	L2c|LINE|L2	-29278.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-54223249-1	chr14	54223149	54223349	+	603.0	f1_c57bl6.idr	Intergenic	Intergenic	30680.0	NM_001113358	13135.0	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	1.28666195288984	1.3360991209947	0.755049192974641	1.82331734374219	1.18488393647429	0.771584144807867	0.75805201049117	1.4853362850038	-1.03916722750272	0.472840721730674	0.926125823511231
Merged-chr2-143862786-4	chr2	143862707	143862907	+	829.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009751, exon 1 of 8)	exon (NM_009751, exon 1 of 8)	366.0	NM_009751	12075.0	Mm.275937	NM_009751	ENSMUSG00000027420	Bfsp1	CP95	beaded filament structural protein 1, in lens-CP94	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141300399-3	chr4	141300283	141300483	+	893.361084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010139)	promoter-TSS (NM_010139)	-838.0	NM_010139	13836.0	Mm.2581	NM_010139	ENSMUSG00000006445	Epha2	AW545284|Eck|Myk2|Sek-2|Sek2	Eph receptor A2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-23597501-3	chr11	23597405	23597605	+	905.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027860, intron 12 of 21)	intron (NM_027860, intron 12 of 21)	36126.0	NM_001347242	71675.0	Mm.48031	NM_027860	ENSMUSG00000042208	0610010F05Rik	Kiaa1841|mKIAA1841	RIKEN cDNA 0610010F05 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-112228754-2	chr5	112228654	112228854	+	621.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_003718, exon 1 of 7)	non-coding (NR_003718, exon 1 of 7)	194.0	NR_033657	330166.0	Mm.44854	NR_003718	ENSMUSG00000097767	Miat	3632434I06|A230057G18Rik|Rncr2|gomafu	myocardial infarction associated transcript (non-protein coding)	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-44171628-3	chr12	44171530	44171730	+	922.944458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38438.0	NM_013760	27362.0	Mm.27432	NM_013760	ENSMUSG00000014905	Dnajb9	AA408011|AA673251|AA673481|AW556981|ERdj4|Mdg1|mDj7	DnaJ heat shock protein family (Hsp40) member B9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-117304505-2	chr2	117304405	117304605	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011246, intron 3 of 16)	intron (NM_011246, intron 3 of 16)	38372.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-15888623-2	chr16	15888523	15888723	+	974.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_146068)	TTS (NM_146068)	1337.0	NM_007679	12609.0	Mm.347407	NM_007679	ENSMUSG00000071637	Cebpd	c/EBPdelta	CCAAT/enhancer binding protein (C/EBP), delta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120728697-2	chr11	120728597	120728797	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_007621)	TTS (NM_007621)	-1413.0	NM_001347608	67880.0	Mm.231091	NM_026428	ENSMUSG00000039450	Dcxr	0610038K04Rik|1810027P18Rik|XR	dicarbonyl L-xylulose reductase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-26475706-2	chr2	26475606	26475806	+	905.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008714, intron 15 of 33)	intron (NM_008714, intron 15 of 33)	-5587.0	NR_105962	102465602.0		NR_105962	ENSMUSG00000098548	Mir6996	Gm27531|mmu-mir-6996	microRNA 6996	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-89154269-2	chr15	89154169	89154369	+	630.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4663.0	NM_011161	19094.0	Mm.91969	NM_011161	ENSMUSG00000053137	Mapk11	P38b|Prkm11|Sapk2|Sapk2b|p38-2|p38beta|p38beta2	mitogen-activated protein kinase 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-27355255-4	chr14	27355139	27355339	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289687, intron 1 of 9)	L1MC4a|LINE|L1	-6150.0	NM_001289688	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-35696561-4	chr2	35696462	35696662	+	909.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290639)	promoter-TSS (NM_001290639)	-170.0	NM_001290639	69601.0	Mm.29629	NM_001001602	ENSMUSG00000026883	Dab2ip	2310011D08Rik|AI480459|Aip1|mKIAA1743	disabled 2 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-124064325-2	chr7	124064225	124064425	+	550.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252072, intron 1 of 1)	intron (NM_001252072, intron 1 of 1)	81144.0	NM_001252072	628779.0	Mm.40210	NM_001252072	ENSMUSG00000078591	Hs3st4	EG628779|Gm6915	heparan sulfate (glucosamine) 3-O-sulfotransferase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-44076192-4	chr17	44076098	44076298	+	976.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	T-rich|Low_complexity|Low_complexity	-2604.0	NM_001168620	83965.0	Mm.30145	NM_032003	ENSMUSG00000023960	Enpp5	AW061004|D17Abb1e|E-NPP 5	ectonucleotide pyrophosphatase/phosphodiesterase 5	protein-coding	3.94960401011675	3.77492745367744	4.08839029618379	4.34894524700366	4.03272128306165	3.61004706173405	4.53955518538508	4.17065369845062	0.0985519499911445	0.824431551535191	0.998431161219273
Merged-chr9-66284033-2	chr9	66283933	66284133	+	551.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66417.0	NM_145617	235439.0	Mm.244179	NM_145617	ENSMUSG00000038664	Herc1	2810449H11Rik|B230218H07|D130015N03Rik|tbl	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-161969140-4	chr1	161969038	161969238	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001204905)	promoter-TSS (NM_001204905)	10.0	NM_001204905	75368.0	Mm.108728	NM_001204904	ENSMUSG00000086277	4930558K02Rik	-	RIKEN cDNA 4930558K02 gene	protein-coding	3.52996728417371	2.95493036423811	4.27161892298747	3.64839279898276	4.08477188679852	2.81861459075718	3.25086543286002	4.31450423184531	0.111395386797505	0.847239097296299	0.998431161219273
Merged-chr4-129113216-2	chr4	129113116	129113316	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286081, intron 2 of 3)	intron (NM_001286081, intron 2 of 3)	6956.0	NM_001286083	15444.0	Mm.384452	NM_010471	ENSMUSG00000028785	Hpca	-	hippocalcin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-38642862-2	chr6	38642762	38642962	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5623.0	NM_001033171	74253.0	Mm.121859	NM_001033171	ENSMUSG00000071537	Klrg2	2310020F24Rik	killer cell lectin-like receptor subfamily G, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-45236358-4	chr2	45236252	45236452	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-118910.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85586172-2	chr12	85586072	85586272	+	630.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12933.0	NM_001205052	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-102492598-3	chr14	102492490	102492690	+	942.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	490042.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-9912431-2	chr19	9912331	9912531	+	780.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12898.0	NM_016692	16319.0	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105474909-2	chr8	105474809	105475009	+	625.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357252, intron 7 of 10)	intron (NM_001357252, intron 7 of 10)	-3487.0	NM_026481	67971.0	Mm.29358	NM_026481	ENSMUSG00000014846	Tppp3	2700055K07Rik|CGI-38|Ceacam9|mmCGM8	tubulin polymerization-promoting protein family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-78183562-4	chr11	78183460	78183660	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207523)	promoter-TSS (NM_207523)	24.0	NM_207523	268449.0	Mm.22723	NM_207523	ENSMUSG00000058546	Rpl23a	BC029892|MDA20	ribosomal protein L23A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97356992-2	chr6	97356892	97357092	+	603.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 6 of 23)	intron (NM_145148, intron 6 of 23)	102294.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-92949541-2	chr1	92949441	92949641	+	567.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_015525, intron 1 of 1)	intron (NR_015525, intron 1 of 1)	1049.0	NR_015525	100037260.0	Mm.442236	NR_015525	ENSMUSG00000100632	9430060I03Rik	-	RIKEN cDNA 9430060I03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-69908216-3	chr3	69908126	69908326	+	651.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48332.0	NM_001286959	66183.0	Mm.45481	NM_133675	ENSMUSG00000043461	Sptssb	1110032A04Rik|ADMP|Sssptb	serine palmitoyltransferase, small subunit B	protein-coding	-0.0980155869687769	-0.220151832815803	-0.224262647514466	0.27806958698958	-0.094170766823903	-0.219222860961358	-0.223357429235034	0.284686267235527	0.0311183153145615	0.989119696665418	1
Merged-chr1-52800513-4	chr1	52800408	52800608	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008384, intron 1 of 5)	intron (NM_008384, intron 1 of 5)	17180.0	NM_008384	16329.0	Mm.917	NM_008384	ENSMUSG00000026102	Inpp1	2300002C06Rik|AV137389	inositol polyphosphate-1-phosphatase	protein-coding	7.02513260976782	6.69225692533258	6.62149280122148	6.73373026402845	6.70148630399152	6.68372607726989	7.03701818812947	6.92316781268185	0.0656749795791629	0.722961908740769	0.998431161219273
Merged-chr12-85465759-2	chr12	85465659	85465859	+	817.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	-8131.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-47330915-4	chr19	47330840	47331040	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008018, intron 6 of 14)	intron (NM_008018, intron 6 of 14)	-57351.0	NR_105961	102466782.0		NR_105961	ENSMUSG00000098786	Mir6995	Gm27576|mmu-mir-6995	microRNA 6995	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-117034019-7	chr13	117033909	117034109	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-8493.0	NM_001081009	52552.0	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125449866-4	chr6	125449751	125449951	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44909.0	NM_007657	12527.0	Mm.210676	NM_007657	ENSMUSG00000030342	Cd9	Tspan29	CD9 antigen	protein-coding	0.0264133809889131	-0.218263853778237	0.330050484045232	0.291682120298903	-0.230663299636447	-0.217283356131613	-0.221649893244844	-0.22536642384138	-3.69118184428958	0.116954040667916	1
Merged-chr18-60848991-4	chr18	60848873	60849073	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001198984)	promoter-TSS (NM_001198984)	-9.0	NM_001198984	21453.0	Mm.486251	NM_011552	ENSMUSG00000024613	Tcof1	AA408847|AW209012|treacle	treacle ribosome biogenesis factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6344951-2	chr19	6344851	6345051	+	765.6999509999999	f1_balb.idr|f1_c57bl6.idr	intron (NR_117093, intron 13 of 30)	intron (NR_117093, intron 13 of 30)	-1529.0	NR_105955	102465598.0		NR_105955	ENSMUSG00000099230	Mir6989	Gm27885|mmu-mir-6989	microRNA 6989	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-124665093-2	chr2	124664993	124665193	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_172537, exon 17 of 17)	exon (NM_172537, exon 17 of 17)	11512.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-91190883-2	chr15	91190783	91190983	+	835.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001358967, exon 1 of 10)	exon (NM_001358967, exon 1 of 10)	1124.0	NM_011994	26874.0	Mm.295456	NM_011994	ENSMUSG00000055782	Abcd2	ABC39|ALDL1|ALDR|ALDRP	ATP-binding cassette, sub-family D (ALD), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-80939533-2	chr13	80939433	80939633	+	652.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_103550)	promoter-TSS (NR_103550)	-870.0	NR_103550	71416.0	Mm.415500	NR_103550		5430425K12Rik	-	RIKEN cDNA 5430425K12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-75099951-4	chr8	75099868	75100068	+	843.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010442, exon 5 of 5)	exon (NM_010442, exon 5 of 5)	6350.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-42295896-3	chr6	42295794	42295994	+	773.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013491, intron 7 of 22)	intron (NM_013491, intron 7 of 22)	9209.0	NM_013491	12723.0	Mm.386757	NM_013491	ENSMUSG00000029862	Clcn1	Clc-1|Clc1|SMCC1|adr|mto|myotonia|nmf355	chloride channel, voltage-sensitive 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-71387948-2	chr2	71387848	71388048	+	602.125	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR23|LTR|ERV1	-1312.0	NM_026115	107435.0	Mm.272472	NM_026115	ENSMUSG00000027018	Hat1	2410071B14Rik|AA536933|Hat-1|KAT1	histone aminotransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101427904-4	chr7	101427754	101427954	+	850.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001008548, intron 1 of 30)	intron (NM_001008548, intron 1 of 30)	6163.0	NR_152192	207728.0	Mm.247564	NM_001008548	ENSMUSG00000030653	Pde2a	CGS-PDE|cGSPDE	phosphodiesterase 2A, cGMP-stimulated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-92667746-2	chr16	92667600	92667800	+	795.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111023, intron 3 of 5)	intron (NM_001111023, intron 3 of 5)	29629.0	NM_001111023	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	-1.58994551673671	-1.55912852307891	-1.56844783632235	-1.57610299769523	-1.18549093183599	-1.55710898902261	-1.56633814807757	-1.57473272746952	1.78703309985663	0.610309988231842	1
Merged-chr4-150265841-2	chr4	150265741	150265941	+	786.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-16075.0	NM_001085492	68703.0	Mm.291274	NM_001085492	ENSMUSG00000039852	Rere	1110033A15Rik|AI414665|ARG|ARP|ATN1L|AW742570|Atr2|DNB1|eye<m03Jus>|eyes3|mKIAA0458	arginine glutamic acid dipeptide (RE) repeats	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-55480658-1	chr4	55480558	55480758	+	667.0	f1_balb.idr	Intergenic	CpG	51817.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	1.41234417048643	0.815880412685442	1.43824388528658	0.981042231070868	1.21633614988951	1.62628668414933	1.45100975417865	0.79488321311014	0.462648442216121	0.734956850394289	0.998431161219273
Merged-chr4-3627196-4	chr4	3627074	3627274	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-29332.0	NR_040643	70143.0	Mm.417835	NR_040643	ENSMUSG00000085394	2210414B05Rik	-	RIKEN cDNA 2210414B05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-96210100-4	chr5	96210003	96210203	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053158)	promoter-TSS (NM_053158)	-12.0	NM_001039084	94061.0	Mm.295499	NM_053158	ENSMUSG00000029486	Mrpl1	2410002L03Rik|5830418D04Rik|AI462572|L1mt	mitochondrial ribosomal protein L1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-168227889-2	chr2	168227789	168227989	+	853.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_132310, intron 1 of 11)	intron (NR_132310, intron 1 of 11)	2490.0	NM_010072	13480.0	Mm.422657	NM_010072	ENSMUSG00000078919	Dpm1	AI118379|AI194292	dolichol-phosphate (beta-D) mannosyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-60501849-4	chr3	60501757	60501957	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253711, intron 1 of 7)	intron (NM_001253711, intron 1 of 7)	678.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16272950-4	chr7	16272853	16273053	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001136270, exon 1 of 1)	exon (NM_001136270, exon 1 of 1)	739.0	NM_001136270	66300.0	Mm.218698	NM_001136270	ENSMUSG00000091811	Inafm1	2610014I16Rik|Prr24	InaF motif containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-45884214-4	chr11	45884101	45884301	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045520, intron 2 of 11)	intron (NM_001045520, intron 2 of 11)	32237.0	NM_001045520	216705.0	Mm.169673	NM_001045520	ENSMUSG00000006169	Clint1	AI642036|AW537616|C530049I24Rik|Enth|Epn4|F630206G17Rik|mKIAA0171	clathrin interactor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-71934492-2	chr6	71934392	71934592	+	705.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009088, intron 12 of 33)	intron (NM_009088, intron 12 of 33)	25439.0	NM_009088	20019.0	Mm.135581	NM_009088	ENSMUSG00000049553	Polr1a	194kDa|2900087K15Rik|3010014K16Rik|RPA194|Rpo1-4|mRPA1	polymerase (RNA) I polypeptide A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-123209709-2	chr10	123209599	123209799	+	845.333374	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-12680.0	NM_001301628	14479.0	Mm.244209	NM_027604	ENSMUSG00000020124	Usp15	4921514G19Rik|AI327321|E430033I05Rik|Gcap18	ubiquitin specific peptidase 15	protein-coding	-1.12159952041782	-1.10004846505469	-1.1107888212872	-0.822413175913809	-0.749308281951638	-1.09772098505464	-1.10835744005807	-1.11803205563717	0.322808628594187	0.92276921893693	1
Merged-chr5-123058001-4	chr5	123057921	123058121	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-11005.0	NM_001347456	74890.0	Mm.141383	NM_029112	ENSMUSG00000029477	Morn3	4930438O03Rik	MORN repeat containing 3	protein-coding	5.75091921914384	5.85858586850431	5.51581779826406	5.84540121761482	5.99838913117922	4.02384906498622	4.74658301033484	5.37939641871717	-0.575676430479652	0.109507822576541	0.518634811292109
Merged-chr12-101075788-2	chr12	101075688	101075888	+	637.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001160214, intron 1 of 14)	B1_Mus1|SINE|Alu	-6663.0	NR_038048	319760.0	Mm.440198	NM_176997	ENSMUSG00000097121	D130020L05Rik	9430007L23Rik	RIKEN cDNA D130020L05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-116677707-2	chr6	116677607	116677807	+	622.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3871.0	NM_178045	213391.0	Mm.257931	NM_178045	ENSMUSG00000042129	Rassf4	3830411C14Rik|AD037|AI586137	Ras association (RalGDS/AF-6) domain family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-99639302-3	chr12	99639188	99639388	+	799.299988	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-11314.0	NR_045288	73457.0	Mm.383439	NR_045288	ENSMUSG00000100211	1700064M15Rik	-	RIKEN cDNA 1700064M15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-9074791-2	chr13	9074691	9074891	+	595.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	A-rich|Low_complexity|Low_complexity	-19090.0	NM_001311117	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-143449747-4	chr7	143449639	143449839	+	994.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11311.0	NM_009876	12577.0	Mm.168789	NM_009876	ENSMUSG00000037664	Cdkn1c	AL024410|CDKI|Kip2|p57(kip2)|p57Kip2	cyclin-dependent kinase inhibitor 1C (P57)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-154961514-4	chr4	154961411	154961611	+	872.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010419, exon 3 of 3)	exon (NM_010419, exon 3 of 3)	588.0	NM_010419	15208.0	Mm.137268	NM_010419	ENSMUSG00000048001	Hes5	bHLHb38	hes family bHLH transcription factor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-42601870-2	chr18	42601770	42601970	+	650.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22218.0	NM_181543	240239.0	Mm.186779	NM_181543	ENSMUSG00000042816	Gpr151	C130082O03Rik|GalRL|PGR7|nGPCR-2037	G protein-coupled receptor 151	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-181533362-2	chr2	181533262	181533462	+	597.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271584, intron 2 of 5)	MTE2a|LTR|ERVL-MaLR	12877.0	NM_001271584	13002.0	Mm.140761	NM_016775	ENSMUSG00000000826	Dnajc5	2610314I24Rik|AU018536|Csp	DnaJ heat shock protein family (Hsp40) member C5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-67406582-4	chr18	67406478	67406678	+	967.654785	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027130, intron 16 of 16)	MIR|SINE|MIR	15847.0	NM_026473	67951.0	Mm.181860	NM_026473	ENSMUSG00000001473	Tubb6	2310057H16Rik|BB220206	tubulin, beta 6 class V	protein-coding	3.43874291561427	4.25515396303653	3.73005681128999	4.58154038382751	3.67248638347182	3.88526744479738	2.91965090027713	3.71811198208418	-0.678475499836166	0.188873110366125	0.667547008495511
Merged-chr14-110875470-2	chr14	110875370	110875570	+	796.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	-120321.0	NM_175499	239250.0	Mm.49728	NM_175499	ENSMUSG00000045871	Slitrk6	4832410J21Rik|Sltk6	SLIT and NTRK-like family, member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-128764273-4	chr6	128764168	128764368	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24373.0	NM_001159904	17059.0	Mm.480764	NM_008527	ENSMUSG00000030325	Klrb1c	AI462337|CD161|Klrb1b|Ly-59|Ly55c|Ly59|NK-RP1|NK1.1|NKR-P1.9|NKRP1|NKRP140|Nk-1|Nk-1.2|Nk1|Nk1.2|Nkrp1b|Nkrp1c|ly-55c	killer cell lectin-like receptor subfamily B member 1C	protein-coding	4.25343352901237	4.27817513310561	4.93095584193989	4.60784952734357	4.02606836323752	4.00008380629412	5.55602045671524	5.00343965319553	0.328296808440238	0.453733248203214	0.919120493489568
Merged-chr11-98360729-2	chr11	98360629	98360829	+	840.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_021547, intron 1 of 14)	intron (NM_021547, intron 1 of 14)	2361.0	NM_021547	59045.0	Mm.265546	NM_021547	ENSMUSG00000018167	Stard3	Mln64|es64	START domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-95793966-4	chr15	95793863	95794063	+	982.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 1 of 19)	intron (NM_175344, intron 1 of 19)	3120.0	NM_001253813	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-46881112-4	chr14	46881014	46881214	+	944.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1851.0	NM_028966	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	2.83643565705201	1.37309959050852	2.14491192198853	2.62617952484118	2.8599483093214	1.38093185176448	2.16205761991387	2.55026868448006	-0.0198823877863963	0.983792202335736	0.998431161219273
Merged-chr10-127625369-2	chr10	127625269	127625469	+	584.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4221.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	2.1866757010854	1.66145284902745	0.840634030400254	0.824878803059859	2.20684015124769	1.6760305928431	0.845073498687696	0.827657059796519	0.0412230057673811	0.977451634281273	0.998431161219273
Merged-chr10-12959234-2	chr10	12959134	12959334	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029075, intron 1 of 2)	intron (NM_029075, intron 1 of 2)	5025.0	NM_029075	74732.0	Mm.248648	NM_029075	ENSMUSG00000039232	Stx11	5830405C08Rik	syntaxin 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-20607430-4	chr9	20607334	20607534	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033729)	promoter-TSS (NR_033729)	-41.0	NR_033729	66662.0	Mm.477847	NM_175110	ENSMUSG00000062470	Fbxl12os	5730577I03Rik	F-box and leucine-rich repeat protein 12, opposite strand	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-67683574-4	chr13	67683445	67683645	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001001187)	promoter-TSS (NM_001001187)	-33.0	NM_001001187	408068.0	Mm.435551	NM_175676	ENSMUSG00000048280	Zfp738	3830402I07Rik|6720487G11Rik	zinc finger protein 738	protein-coding	4.0485278583878	4.27829768360417	3.59883530240523	4.65797482448137	3.97295755747608	4.8299894800791	4.4552191186256	4.32821052718538	0.28959857309077	0.501565849021937	0.938443375140454
Merged-chr19-6117548-2	chr19	6117448	6117648	+	733.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133678, intron 1 of 1)	intron (NM_133678, intron 1 of 1)	1038.0	NM_133678	66406.0	Mm.303924	NM_133678	ENSMUSG00000024790	Sac3d1	2410004C24Rik|AU015683|shd1	SAC3 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-39957982-3	chr10	39957887	39958087	+	772.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001113388)	TTS (NM_001113388)	2166.0	NM_001173500	100041085.0	Mm.332530	NM_001173500	ENSMUSG00000071335	Mfsd4b3	G630090E17Rik|Naglt1c	major facilitator superfamily domain containing 4B3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-96683399-2	chr8	96683299	96683499	+	609.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-795034.0	NM_010325	14719.0	Mm.230169	NM_010325	ENSMUSG00000031672	Got2	AL022787|FABP-pm|Got-2|Kyat4|mAspAT	glutamatic-oxaloacetic transaminase 2, mitochondrial	protein-coding	-1.84335282827126	-1.8131721693203	-1.82229904969614	-1.82979614098203	-1.69762670694229	-1.6675868413945	-1.82023292403457	-1.82845416522631	1.43472749533542	0.684151459466795	1
Merged-chr17-28142384-2	chr17	28142284	28142484	+	880.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001004366)	promoter-TSS (NM_001004366)	-142.0	NM_001004366	268935.0	Mm.258491	NM_001004366	ENSMUSG00000038677	Scube3	CEGF3|D030038I21Rik	signal peptide, CUB domain, EGF-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-88408416-3	chr12	88408310	88408510	+	967.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361601, intron 3 of 8)	BC1_Mm|scRNA|scRNA	-31087.0	NR_045888	71818.0	Mm.490789	NR_045888	ENSMUSG00000113434	3200001D21Rik	-	RIKEN cDNA 3200001D21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-93595839-5	chr15	93595719	93595919	+	977.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033217)	promoter-TSS (NM_001033217)	72.0	NM_001033217	106042.0	Mm.150314	NM_001033217	ENSMUSG00000036158	Prickle1	1110058P22Rik|AW215793|Prickle|b2b019Clo|mpk1	prickle planar cell polarity protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-3083019-5	chr17	3082939	3083139	+	999.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_003519, intron 1 of 7)	B1_Mus1|SINE|Alu	1144.0	NR_003519	328734.0	Mm.335641	NR_003519		Pisd-ps2	D030013I16Rik	phosphatidylserine decarboxylase, pseudogene 2	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56281173-2	chr17	56281073	56281273	+	662.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_025836, intron 6 of 7)	intron (NM_025836, intron 6 of 7)	-4406.0	NM_174989	106759.0	Mm.203952	NM_174989	ENSMUSG00000047123	Ticam1	AW046014|AW547018|TICAM-1|TRIF	toll-like receptor adaptor molecule 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4304177-2	chr16	4304077	4304277	+	568.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009624, intron 7 of 10)	intron (NM_009624, intron 7 of 10)	74948.0	NR_003628	436332.0	Mm.478141	NM_001013830	ENSMUSG00000089645	Gm5766	EG436332	ribosomal protein L7a pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129413246-1	chr2	129413146	129413346	+	602.0	f1_balb.idr	Intergenic	Intergenic	-42107.0	NM_008361	16176.0	Mm.222830	NM_008361	ENSMUSG00000027398	Il1b	IL-1beta|Il-1b	interleukin 1 beta	protein-coding	0.027887205288383	-0.0979022524917447	0.456677218561347	-0.106547826917152	0.031967041509185	-0.0968009344534563	-0.101708227063968	0.520645584726541	0.195968063355679	0.928598273463865	1
Merged-chr13-100653079-2	chr13	100652979	100653179	+	922.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001015889, intron 1 of 2)	intron (NM_001015889, intron 1 of 2)	1472.0	NM_001015889	108143.0	Mm.301148	NM_027139	ENSMUSG00000052293	Taf9	2310012M09Rik|AA673500|AU045423|TAFII31|TAFII32|Taf2g	TATA-box binding protein associated factor 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-111448576-2	chr14	111448476	111448676	+	655.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3A|LINE|L1	-226539.0	NM_198865	75409.0	Mm.235097	NM_029273	ENSMUSG00000033214	Slitrk5	2610019D03Rik	SLIT and NTRK-like family, member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-134688827-4	chr5	134688732	134688932	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010717)	promoter-TSS (NM_010717)	-242.0	NM_010717	16885.0	Mm.15409	NM_010717	ENSMUSG00000029674	Limk1	KIZ-1|LIMK-1|Limk	LIM-domain containing, protein kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-20294179-2	chr14	20294079	20294279	+	899.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359868)	promoter-TSS (NM_001359868)	-511.0	NM_001359870	67725.0	Mm.317636	NM_026341	ENSMUSG00000021809	Nudt13	4933433B15Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-77963408-2	chr10	77963310	77963510	+	806.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_138301, intron 4 of 33)	B2_Mm2|SINE|B2	6462.0	NM_138301	28240.0	Mm.276762	NM_138301	ENSMUSG00000009292	Trpm2	9830168K16Rik|C79133|LTRPC2|TRPC7|Trp7|Trrp7	transient receptor potential cation channel, subfamily M, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-52470389-1	chr16	52470289	52470489	+	787.0	f0_balb.idr	Intergenic	Intergenic	-17308.0	NM_001331110	11658.0	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-155505168-3	chr1	155505060	155505260	+	977.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21951.0	NR_132128	433367.0	Mm.359304	NR_132128	ENSMUSG00000073535	Gm5532	EG433367	predicted gene 5532	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-46832107-2	chr7	46832007	46832207	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13697.0	NM_010699	16828.0	Mm.29324	NM_010699	ENSMUSG00000063229	Ldha	Ldh1|Ldhm|l7R2	lactate dehydrogenase A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-66486574-4	chr8	66486457	66486657	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025465)	promoter-TSS (NM_025465)	-27.0	NM_001357208	66282.0	Mm.294985	NM_025465	ENSMUSG00000025591	Tma16	1810029B16Rik	translation machinery associated 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135070005-4	chr4	135069910	135070110	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50635.0	NM_019732	12399.0	Mm.378894	NM_019732	ENSMUSG00000070691	Runx3	AML2|Cbfa3|Pebp2a3	runt related transcription factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-98830885-4	chr15	98830832	98831032	+	885.587524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001033276)	TTS (NM_001033276)	576.0	NM_016781	19082.0	Mm.6670	NM_016781	ENSMUSG00000067713	Prkag1	AA571379|BB036179|Prkaac	protein kinase, AMP-activated, gamma 1 non-catalytic subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111930537-4	chr12	111930466	111930666	+	990.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13916.0	NR_029464	77675.0	Mm.98331	NR_029464	ENSMUSG00000113769	5033406O09Rik	9130204G15Rik	RIKEN cDNA 5033406O09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-23516479-2	chr13	23516379	23516579	+	685.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-14565.0	NM_153173	69386.0	Mm.158272	NM_153173	ENSMUSG00000060981	Hist1h4h	1700024H08Rik	histone cluster 1, H4h	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-29178289-2	chr7	29178145	29178345	+	650.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026545, intron 3 of 6)	PB1D9|SINE|Alu	2428.0	NM_026545	57296.0	Mm.273152	NM_026545	ENSMUSG00000030591	Psmd8	6720456J22Rik|AA407360|AL033291|AL033322|AL033323|C76433	proteasome (prosome, macropain) 26S subunit, non-ATPase, 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-116014770-2	chr6	116014670	116014870	+	815.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19765.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-57698488-1	chr11	57698388	57698588	+	646.666687	f0_balb.idr	intron (NM_134189, intron 1 of 11)	intron (NM_134189, intron 1 of 11)	-48994.0	NR_153850	78762.0	Mm.362149	NR_153850		4933424L21Rik	-	RIKEN cDNA 4933424L21 gene	ncRNA	1.44763869695385	0.91044603014521	0.893745796330531	0.880584790553853	1.75055961071604	1.65654195301217	1.91901500093077	1.65549341034581	2.71619967292524	0.0439971983074678	0.301300448226597
Merged-chr1-74433878-2	chr1	74433776	74433976	+	942.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009509, intron 19 of 19)	B1_Mus1|SINE|Alu	24492.0	NM_009509	22349.0	Mm.471601	NM_009509	ENSMUSG00000026175	Vil1	Vil	villin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-17398855-4	chr17	17398754	17398954	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3832.0	NM_025681	66643.0	Mm.268018	NM_025681	ENSMUSG00000047786	Lix1	5730466L18Rik	limb and CNS expressed 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126867255-2	chr8	126867155	126867355	+	698.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18235.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-29313429-4	chr10	29313316	29313516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025855)	promoter-TSS (NM_025855)	-84.0	NM_025855	52665.0	Mm.28930	NM_025855	ENSMUSG00000019883	Echdc1	1700028A24Rik|AI314462|AI930038|D10Ertd667e|MMCD	enoyl Coenzyme A hydratase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116140207-2	chr11	116140107	116140307	+	771.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F1|SINE|Alu	-1339.0	NM_024177	60441.0	Mm.29974	NM_024177	ENSMUSG00000020775	Mrpl38	1110036N21Rik|4733401F03Rik|MRP-L3|R75240|Rpml3	mitochondrial ribosomal protein L38	protein-coding	-0.849540347160918	-0.83791883826935	-0.842874229298225	-0.845379854937529	-0.567718301155892	-0.197178340663439	-0.842158039317344	-0.844942093372508	3.16182143622335	0.281564155371618	1
Merged-chr1-43827923-4	chr1	43827821	43828021	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026430)	promoter-TSS (NM_026430)	-213.0	NM_026430	67883.0	Mm.387202	NM_026430	ENSMUSG00000057363	Uxs1	1600025I13Rik|AI451869|AI649125|AW550562	UDP-glucuronate decarboxylase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-62865722-3	chr5	62865625	62865825	+	551.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170705, intron 7 of 8)	RMER15|LTR|ERVL	51902.0	NM_001170705	100322896.0	Mm.479821	NM_001170705	ENSMUSG00000090326	Dthd1	Gm17384	death domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97319430-2	chr6	97319272	97319472	+	991.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 12 of 23)	intron (NM_145148, intron 12 of 23)	-66592.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	0.49924206966869	0.390771735679621	0.00437069019006175	-0.000638607104985173	-0.00775922945072227	0.892047645843049	0.00579835649945901	0.000238234918948449	0.370203754969743	0.866233619975239	1
Merged-chr8-70834284-2	chr8	70834184	70834384	+	764.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_027560)	TTS (NM_027560)	5436.0	NM_027560	70807.0	Mm.24215	NM_027560	ENSMUSG00000002910	Arrdc2	4632416I05Rik|Ilad1	arrestin domain containing 2	protein-coding	0.728544313607118	1.47993954438827	0.42734862373617	0.418693619149039	0.406254012248301	1.28745760133314	0.429801429118844	0.932078590652262	-0.136034866887609	0.938022260817808	0.998431161219273
Merged-chr2-144047108-4	chr2	144047008	144047208	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001044750, intron 1 of 2)	intron (NM_001044750, intron 1 of 2)	14006.0	NM_207275	403171.0	Mm.389362	NM_207275	ENSMUSG00000037307	Banf2	4930517K23Rik|Baf-L|Baf-like|Gm115	barrier to autointegration factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-6773458-4	chr18	6773372	6773572	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181070, intron 2 of 6)	intron (NM_181070, intron 2 of 6)	8305.0	NM_001278447	19330.0	Mm.132802	NM_181070	ENSMUSG00000073639	Rab18	AA959686	RAB18, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-101523785-4	chr13	101523685	101523885	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-126205.0	NR_046187	78136.0	Mm.399065	NR_046187		4922502H24Rik	-	RIKEN cDNA 4922502H24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-4987444-2	chr11	4987344	4987544	+	932.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001243044, intron 1 of 21)	intron (NM_001243044, intron 1 of 21)	620.0	NM_001355660	11764.0	Mm.274816	NM_007454	ENSMUSG00000009090	Ap1b1	Adtb1|b2b1660Clo	adaptor protein complex AP-1, beta 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-116227088-2	chr3	116226988	116227188	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	26396.0	NM_022427	64378.0	Mm.40025	NM_022427	ENSMUSG00000068696	Gpr88	AW061286|Strg	G-protein coupled receptor 88	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-28511722-2	chr2	28511640	28511840	+	834.583374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	-1427.0	NM_009058	19730.0	Mm.5236	NM_009058	ENSMUSG00000026821	Ralgds	Gnds|Rgds|mKIAA1308	ral guanine nucleotide dissociation stimulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-41491868-2	chr13	41491768	41491968	+	660.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4508.0	NM_001111324	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-69345944-4	chr18	69345758	69345958	+	863.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361126)	promoter-TSS (NM_001361126)	137.0	NM_001361127	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	0.940186808257142	0.501896888183978	0.666143467979172	0.902790505866638	0.95041170938832	0.503518281626389	0.671181167835094	1.01478594833504	0.212926659694956	0.893701300955846	1
Merged-chr15-14600043-1	chr15	14599943	14600143	+	540.0	f1_balb.idr	Intergenic	L1_Mus4|LINE|L1	-1426368.0	NM_007666	12563.0	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	0.996064068617204	1.88789243431578	0.815596215713666	0.793359620115368	1.3758793264614	2.80919515294593	0.821791792277244	2.17973775777289	2.18622288003709	0.0938040670198304	0.474611131334239
Merged-chr6-17800936-4	chr6	17800836	17801036	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022332, intron 1 of 15)	intron (NM_022332, intron 1 of 15)	51766.0	NM_001083315	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-24805257-2	chr13	24805157	24805357	+	631.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_024473, intron 2 of 4)	intron (NM_024473, intron 2 of 4)	3600.0	NM_024473	79555.0	Mm.266668	NM_024473	ENSMUSG00000019132	BC005537	8030460C05Rik|C78201	cDNA sequence BC005537	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-14883716-3	chr8	14883633	14883833	+	815.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4803.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88144111-3	chr3	88143982	88144182	+	762.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310593, intron 1 of 10)	intron (NM_001310593, intron 1 of 10)	1710.0	NM_133665	17261.0	Mm.28184	NM_133665	ENSMUSG00000001419	Mef2d	C80750	myocyte enhancer factor 2D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-73523611-2	chr7	73523511	73523711	+	632.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081345, intron 2 of 38)	(GGGA)n|Simple_repeat|Simple_repeat	18135.0	NM_001081345	244059.0	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-148722426-1	chr6	148722326	148722526	+	739.0	f0_balb.idr	Intergenic	Intergenic	-44426.0	NR_131024	75831.0	Mm.159595	NR_131024	ENSMUSG00000084909	4930528G23Rik	-	RIKEN cDNA 4930528G23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72386823-2	chr6	72386723	72386923	+	550.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016794, intron 2 of 2)	ID_B1|SINE|B4	3844.0	NM_016794	22320.0	Mm.1838	NM_016794	ENSMUSG00000050732	Vamp8	AU041171|Edb|endobrevin	vesicle-associated membrane protein 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-5135018-2	chr18	5134918	5135118	+	828.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30713.0	NR_153824	102637682.0	Mm.451914	NR_153824		Gm26682	Gm38715	predicted gene, 26682	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-97687995-2	chr7	97687895	97688095	+	755.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001081267, exon 16 of 16)	3' UTR (NM_001081267, exon 16 of 16)	8472.0	NR_154552	102641859.0	Mm.211743	NR_154551		Rsf1os2	Gm15623	remodeling and spacing factor 1, opposite strand 2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-134870741-2	chr4	134870641	134870841	+	564.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011270, intron 1 of 9)	intron (NM_011270, intron 1 of 9)	6205.0	NM_011270	19746.0	Mm.195461	NM_011270	ENSMUSG00000028825	Rhd	Rh|Rhced|Rhl1	Rh blood group, D antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-119805856-4	chr13	119805748	119805948	+	945.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	-14726.0	NM_001302550	72465.0	Mm.139115	NM_028245	ENSMUSG00000094870	Zfp131	2610109I01Rik|AW558871|Znf131	zinc finger protein 131	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-89860404-4	chr5	89860342	89860542	+	791.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081401, intron 3 of 21)	intron (NM_001081401, intron 3 of 21)	22892.0	NM_177872	330119.0	Mm.133062	NM_177872	ENSMUSG00000043635	Adamts3	1100001H14Rik|6330442E02Rik	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 3	protein-coding	-1.29633872064033	-1.26720680975202	-1.27768629845203	-1.28629446248818	-0.70879630402184	-1.2649358608345	-1.2753139719142	-1.28475360524138	2.50884260628271	0.468217847016783	1
Merged-chr2-160020592-2	chr2	160020492	160020692	+	963.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NR_040499, intron 1 of 3)	intron (NR_040499, intron 1 of 3)	3939.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-51521677-4	chr10	51521590	51521790	+	803.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	SSU-rRNA_Hsa|rRNA|rRNA	30792.0	NM_013532	14728.0	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-181247350-4	chr1	181247250	181247450	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35372.0	NM_145514	226757.0	Mm.289082	NM_145514	ENSMUSG00000038733	Wdr26	1600024A01Rik|AA693241|AI447817|AU044014|C77982|Gid7	WD repeat domain 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-60760655-2	chr18	60760555	60760755	+	782.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11990.0	NM_008306	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	-0.366626417179347	-0.352692175281507	-0.357249875608969	0.28625245588711	-0.365754612910758	-0.35166575818681	-0.356244039914784	0.294119739107777	0.0282770312316891	0.991511101680898	1
Merged-chr14-31482565-4	chr14	31482456	31482656	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359849, intron 4 of 4)	intron (NM_001359849, intron 4 of 4)	12202.0	NM_001359850	67011.0	Mm.291731	NM_025907	ENSMUSG00000021891	Mettl6	1600013P15Rik|AI467521|AU020711	methyltransferase like 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69555789-2	chr11	69555689	69555889	+	760.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007911, exon 5 of 5)	3' UTR (NM_007911, exon 5 of 5)	4448.0	NM_007911	13643.0	Mm.249637	NM_007911	ENSMUSG00000003934	Efnb3	EFL-6|ELF-3|Elk-L3|Epl8|LERK-8|NLERK-2	ephrin B3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-7998040-2	chr14	7997940	7998140	+	613.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3858.0	NM_007870	13421.0	Mm.272258	NM_007870	ENSMUSG00000025279	Dnase1l3	DNasegamma|Dhp2|Lsd	deoxyribonuclease 1-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-80083613-2	chr2	80083513	80083713	+	713.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355141, intron 2 of 15)	ORR1E|LTR|ERVL-MaLR	-44711.0	NM_001355142	18573.0	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-87389399-2	chr12	87389299	87389499	+	615.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1044.0	NM_011479	20773.0	Mm.565	NM_011479	ENSMUSG00000021036	Sptlc2	LCB2|LCB2a|Spt2	serine palmitoyltransferase, long chain base subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-120451725-2	chr1	120451677	120451877	+	760.5	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	53247.0	NM_010766	17167.0	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	0.54161170528705	1.92787413748993	1.59198728598776	0.347070840941205	0.328582669939708	0.379099741640679	0.623144002807463	0.34930433039158	-4.17216851289119	0.0159792248370593	0.151756258254647
Merged-chr17-73935448-4	chr17	73935346	73935546	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011723, intron 5 of 35)	URR1A|DNA|hAT-Charlie	14750.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-3037628-2	chr17	3037528	3037728	+	613.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46555.0	NR_003519	328734.0	Mm.335641	NR_003519		Pisd-ps2	D030013I16Rik	phosphatidylserine decarboxylase, pseudogene 2	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-94264129-2	chr13	94264029	94264229	+	953.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346609, intron 1 of 8)	intron (NM_001346609, intron 1 of 8)	21152.0	NM_029153	107767.0	Mm.201455	NM_029153	ENSMUSG00000021687	Scamp1	4930505M11Rik|AI415563|AW122395	secretory carrier membrane protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126791957-3	chr7	126791857	126792057	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019674, intron 2 of 8)	CpG	407.0	NM_001360464	56420.0	Mm.41998	NM_019674	ENSMUSG00000030697	Ppp4c	1110002D08Rik|AU016079|PP-X|PP4C|Ppx|pp4	protein phosphatase 4, catalytic subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-54316977-3	chr3	54316854	54317054	+	819.68335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253682, intron 10 of 11)	intron (NM_001253682, intron 10 of 11)	-44153.0	NM_001198766	50706.0	Mm.236067	NM_015784	ENSMUSG00000027750	Postn	A630052E07Rik|AI747096|OSF-2|Osf2|PLF|PN	periostin, osteoblast specific factor	protein-coding	-1.09673369143719	-1.0731013115114	-1.08529267491915	-1.09285102390494	-0.321127520541282	-1.07045939220346	-1.08253281747072	-1.09244324268126	2.98800045075445	0.374886936590324	1
Merged-chr11-120363310-2	chr11	120363210	120363410	+	736.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_172802, intron 1 of 4)	intron (NM_172802, intron 1 of 4)	1776.0	NM_172802	238021.0	Mm.481403	NM_172802	ENSMUSG00000025380	Fscn2	A930022G03|Ahl8|C630046B20Rik	fascin actin-bundling protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-48459506-2	chr14	48459417	48459617	+	745.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_001310584, intron 4 of 16)	intron (NM_001310584, intron 4 of 16)	13165.0	NR_132324	218989.0	Mm.85211	NM_172600	ENSMUSG00000036339	Tmem260	5930435P15|6720456H20Rik	transmembrane protein 260	protein-coding	2.37890318638543	2.8063726531497	3.11661271996372	3.18691508097822	2.26619829388611	3.05505200880996	3.50592176885991	2.38308507608011	-0.00791915648192574	0.99116901984254	0.998431161219273
Merged-chr2-158117034-2	chr2	158116934	158117134	+	943.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009373, exon 13 of 13)	3' UTR (NM_009373, exon 13 of 13)	-25237.0	NR_040609	72340.0	Mm.443395	NR_040609	ENSMUSG00000100860	2010009K17Rik	-	RIKEN cDNA 2010009K17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81956456-2	chr15	81956356	81956556	+	728.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013872, intron 2 of 7)	intron (NM_013872, intron 2 of 7)	4474.0	NM_001282040	29858.0	Mm.18939	NM_013872	ENSMUSG00000022474	Pmm1	C77612	phosphomannomutase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-59546322-2	chr11	59546222	59546422	+	654.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_153314, intron 2 of 9)	intron (NR_153314, intron 2 of 9)	3636.0	NR_153314	216799.0	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-54463666-1	chr14	54463566	54463766	+	999.0	f1_c57bl6.idr	promoter-TSS (NM_022993)	promoter-TSS (NM_022993)	-481.0	NM_022993	65107.0	Mm.472719	NM_022993	ENSMUSG00000022175	Lrp10	Lrp9	low-density lipoprotein receptor-related protein 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-93068224-1	chr10	93068124	93068324	+	557.0	f1_c57bl6.idr	intron (NM_001347060, intron 2 of 67)	RMER5|LTR|ERV1	13372.0	NM_001347060	380654.0	Mm.34980	NM_001347060	ENSMUSG00000020014	Cfap54	4930485B16Rik|Gm872	cilia and flagella associated protein 54	protein-coding	-0.649608294736536	-0.795123642821364	-0.798874226322788	0.051804187027324	-0.80589762948078	-0.792774272386048	-0.798045704617922	-0.801270301082399	-3.32742208451239	0.243155207991184	1
Merged-chr4-102573499-4	chr4	102573448	102573648	+	775.75	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019840, intron 6 of 14)	intron (NM_019840, intron 6 of 14)	3488.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	0.317012166288944	0.942795159024425	0.653002292779631	0.85286960451676	0.697472554425652	0.338884246324643	0.510511164315924	0.326460190328776	-1.53034308776246	0.394978678554799	1
Merged-chr8-110997771-4	chr8	110997641	110997841	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007916)	promoter-TSS (NM_007916)	82.0	NM_007916	13680.0	Mm.287901	NM_007916	ENSMUSG00000015023	Ddx19a	DBP5|Ddx19|Eif4a-rs1	DEAD (Asp-Glu-Ala-Asp) box polypeptide 19a	protein-coding	-0.0589352990178023	-0.0327277775754439	0.864993327565895	-0.047767619752186	-0.0572575189522348	-0.0308458502771169	1.06385441687822	-0.0466072017659052	0.458732755750972	0.840676962735285	1
Merged-chr7-39552694-4	chr7	39552635	39552835	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	34969.0	NM_001004139	70227.0	Mm.333800	NM_001004139	ENSMUSG00000068959	Zfp619	3000002G13Rik	zinc finger protein 619	protein-coding	7.56573065141366	6.79618409447921	7.52299906350758	7.22682663957591	7.79161176391407	7.58525786454162	7.468917581648	7.75708554488638	0.357603618669547	0.0411769761966752	0.289364326673785
Merged-chr17-74866514-2	chr17	74866414	74866614	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-139015.0	NM_019919	268977.0	Mm.269747	NM_019919	ENSMUSG00000001870	Ltbp1	9430031G15Rik|9830146M04|Ltbp-1|Ltbp1L|TGF-beta1-BP-1|Tgfb|b2b1000Clo	latent transforming growth factor beta binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-112660683-4	chr13	112660590	112660790	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178746)	promoter-TSS (NM_178746)	-76.0	NM_178746	268706.0	Mm.40834	NM_175376	ENSMUSG00000047789	Slc38a9	4833412L08Rik|6720411P22Rik|9130023D20Rik|9430067K09Rik|A730092C09	solute carrier family 38, member 9	protein-coding	5.10938081769498	5.607904451631	5.77660237590468	4.76216953122112	4.87055992709856	5.35516829835815	5.79041436394685	5.22200184152403	-0.0240192565740128	0.941744966966342	0.998431161219273
Merged-chr13-23740916-2	chr13	23740863	23741063	+	707.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CACCC)n|Simple_repeat|Simple_repeat	2156.0	NM_015786	50708.0	Mm.193539	NM_015786	ENSMUSG00000036181	Hist1h1c	0610008C09Rik|H1.2|H1c|H1f2|H1var1|His1a	histone cluster 1, H1c	protein-coding	0.437117579516566	1.0945629467578	0.291002673087714	1.24651884263238	0.442245988225517	0.301727184452458	0.497040123070998	0.285372100212086	-2.85318253989603	0.119557382113955	1
Merged-chr19-47146621-1	chr19	47146521	47146721	+	572.0	f1_balb.idr	Intergenic	Intergenic	-2447.0	NM_001081271	546729.0	Mm.439624	NM_001081271	ENSMUSG00000079258	Calhm1	EG546729	calcium homeostasis modulator 1	protein-coding	1.76106962666333	0.865213810123369	0.844931606489505	1.77531556251194	1.86452132155247	0.869694368270468	0.84946384541274	2.27848902301018	0.678525125714492	0.637143226922207	0.982417279970648
Merged-chr9-66898038-2	chr9	66897938	66898138	+	554.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	21667.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-7605798-3	chr9	7605699	7605899	+	769.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22432.0	NM_013903	30800.0	Mm.390121	NM_013903	ENSMUSG00000018620	Mmp20	-	matrix metallopeptidase 20 (enamelysin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-93606047-2	chr16	93605947	93606147	+	573.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1790.0	NM_007620	12408.0	Mm.26940	NM_007620	ENSMUSG00000051483	Cbr1	AW261796|CR|Cbr	carbonyl reductase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-88586431-2	chr5	88586331	88586531	+	605.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359208, intron 2 of 13)	intron (NM_001359208, intron 2 of 13)	2918.0	NM_001359209	52822.0	Mm.270469	NM_027530	ENSMUSG00000029291	Rufy3	2810428M05Rik|6330416M07Rik|AW455998|AW538594|D5Bwg0860e|Ripx|Rpipx	RUN and FYVE domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-94625912-4	chr16	94625801	94626001	+	991.008301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113389, intron 2 of 11)	intron (NM_001113389, intron 2 of 11)	14482.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98782100-5	chr11	98782010	98782210	+	729.099976	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	G-rich|Low_complexity|Low_complexity	-6733.0	NM_145434	217166.0	Mm.390397	NM_145434	ENSMUSG00000020889	Nr1d1	A530070C09Rik|R75201	nuclear receptor subfamily 1, group D, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-88708376-2	chr10	88708276	88708476	+	688.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22725.0	NM_001037166	237433.0	Mm.478763	NM_001037166		Gm4925	EG237433	predicted gene 4925	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-3281104-4	chr18	3281000	3281200	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311067)	promoter-TSS (NM_001311067)	32.0	NM_001311066	12916.0	Mm.5244	NM_013498	ENSMUSG00000063889	Crem	ICER|ICERI	cAMP responsive element modulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-52918343-3	chr2	52918243	52918443	+	889.544434	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	60475.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126760751-2	chr7	126760651	126760851	+	987.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_011952, exon 2 of 9)	exon (NM_011952, exon 2 of 9)	1125.0	NM_011952	26417.0	Mm.8385	NM_011952	ENSMUSG00000063065	Mapk3	Erk-1|Erk1|Ert2|Esrk1|Mnk1|Mtap2k|Prkm3|p44|p44erk1|p44mapk	mitogen-activated protein kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-115737708-4	chr4	115737609	115737809	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172698)	promoter-TSS (NM_172698)	-364.0	NM_172698	230648.0	Mm.283565	NM_172698	ENSMUSG00000034210	Efcab14	4732418C07Rik	EF-hand calcium binding domain 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-99933118-2	chr10	99933018	99933218	+	648.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-82703.0	NM_001347156	17311.0	Mm.45124	NM_013598	ENSMUSG00000019966	Kitl	Clo|Con|Gb|Kitlg|Mgf|SCF|SF|SLF|Sl|blz|contrasted	kit ligand	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-62736701-4	chr1	62736593	62736793	+	997.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077404, intron 2 of 16)	intron (NM_001077404, intron 2 of 16)	33376.0	NM_001077407	18187.0	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-5837326-1	chr11	5837226	5837426	+	797.666687	f1_c57bl6.idr	intron (NM_017401, intron 1 of 10)	intron (NM_017401, intron 1 of 10)	690.0	NM_017401	54125.0	Mm.260194	NM_017401	ENSMUSG00000020474	Polm	AI462166|B230309I03Rik|Tdt-N	polymerase (DNA directed), mu	protein-coding	2.50325486141831	2.28444875245356	2.30887573226566	1.15271941649073	2.22729757635796	2.30234643205559	1.18199059219245	1.39733086274101	-0.6965754809838	0.527833209484225	0.948961270024856
Merged-chr16-36795079-1	chr16	36794979	36795179	+	784.5	f0_balb.idr	intron (NM_134111, intron 5 of 5)	intron (NM_134111, intron 5 of 5)	-10117.0	NM_021301	57738.0	Mm.281804	NM_021301	ENSMUSG00000022899	Slc15a2	8430408C16Rik|C78862|Pept2	solute carrier family 15 (H+/peptide transporter), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-131430628-4	chr2	131430530	131430730	+	995.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61232.0	NM_001177834	228608.0	Mm.136586	NM_145533	ENSMUSG00000027333	Smox	B130066H01Rik|PAO|PAOh1|SMO	spermine oxidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-43081981-4	chr5	43081866	43082066	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-151497.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89227456-4	chr3	89227224	89227424	+	857.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_030579)	promoter-TSS (NR_030579)	-126.0	NR_030579	100124470.0		NR_030579	ENSMUSG00000076255	Mir92b	Mirn92b|mir-92b|mmu-mir-92b	microRNA 92b	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-106222494-4	chr9	106222367	106222567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031178)	promoter-TSS (NM_031178)	-131.0	NM_031178	81897.0	Mm.44889	NM_031178	ENSMUSG00000045322	Tlr9	-	toll-like receptor 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-27270324-4	chr3	27270244	27270444	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46733.0	NM_009425	22035.0	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-23587955-3	chr15	23587843	23588043	+	794.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	551480.0	NM_001081299	320865.0	Mm.241965	NM_001081299	ENSMUSG00000040420	Cdh18	B230220E17Rik|Cdh14l|Tg(GFAP-APOE_i4)1Hol	cadherin 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-167350619-2	chr1	167350519	167350719	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019993, intron 1 of 10)	intron (NM_019993, intron 1 of 10)	628.0	NM_019993	56752.0	Mm.292539	NM_019993	ENSMUSG00000026687	Aldh9a1	AA139417|Abaldh|ESTM40|TMABA-DH|Tmabadh	aldehyde dehydrogenase 9, subfamily A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-82867307-4	chr4	82867222	82867422	+	892.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7649.0	NM_026647	68268.0	Mm.32047	NM_026647	ENSMUSG00000028403	Zdhhc21	9130404H11Rik|AL024349|D130004H04Rik|dep	zinc finger, DHHC domain containing 21	protein-coding	3.63169312957003	3.63848355951106	3.51813284420771	3.69895071888392	3.86392594416864	2.11416135908921	2.64719536812244	3.89140521673446	-0.397410700470459	0.524361125308279	0.948340152465298
Merged-chr14-57378307-3	chr14	57378209	57378409	+	761.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030004, intron 2 of 7)	intron (NM_030004, intron 2 of 7)	20174.0	NM_030004	68631.0	Mm.25539	NM_030004	ENSMUSG00000021947	Cryl1	1110025H08Rik|A230106J09Rik|C85932|gul3dh	crystallin, lambda 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100628232-2	chr11	100628132	100628332	+	893.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_028024)	TTS (NM_028024)	5277.0	NM_028024	71966.0	Mm.274734	NM_028024	ENSMUSG00000017837	Nkiras2	2410003M04Rik|4930527H08Rik|D630018G21Rik|KBRAS2	NFKB inhibitor interacting Ras-like protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-60341777-4	chr10	60341670	60341870	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252635, intron 37 of 68)	ORR1E|LTR|ERVL-MaLR	-5081.0	NM_001159572	74048.0	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-99182865-3	chr4	99182793	99182993	+	995.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11041.0	NM_175029	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	4.98867875148219	3.74160396275559	3.908780227108	3.42609533349643	4.06517059602228	2.41966358683579	3.46512702162129	3.25617086836825	-1.03155745117069	0.0798262521644382	0.429743661442834
Merged-chr2-59616664-4	chr2	59616562	59616762	+	928.8624880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198294, intron 1 of 26)	intron (NM_198294, intron 1 of 26)	4620.0	NM_198294	66860.0	Mm.27917	NM_198294	ENSMUSG00000035168	Tanc1	1200003E16Rik|Tanc|mKIAA1728	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-108215020-4	chr11	108214916	108215116	+	889.158325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011101, intron 2 of 16)	intron (NM_011101, intron 2 of 16)	128872.0	NM_011101	18750.0	Mm.222178	NM_011101	ENSMUSG00000050965	Prkca	AI875142|Pkca	protein kinase C, alpha	protein-coding	3.91419672321812	3.18852801273475	4.06514451597574	3.45722163923411	3.14609092011088	3.21254007623249	3.86509542101025	3.00437257305183	-0.54661297945513	0.323848073459992	0.826356696166097
Merged-chr17-84084130-4	chr17	84084025	84084225	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045458, intron 2 of 5)	intron (NR_045458, intron 2 of 5)	5465.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-43447824-4	chr1	43447721	43447921	+	808.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010879, intron 1 of 4)	intron (NM_010879, intron 1 of 4)	2070.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-29353850-2	chr17	29353750	29353950	+	633.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5918.0	NM_001347335	56462.0	Mm.3224	NM_019880	ENSMUSG00000024012	Mtch1	2310034O17Rik|AI255158|AU018396|C77849|PSAP	mitochondrial carrier 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-29614866-4	chr17	29614766	29614966	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_132314)	promoter-TSS (NR_132314)	77.0	NM_021419	58230.0	Mm.305994	NM_021419	ENSMUSG00000090083	Rnf8	3830404E21Rik|AIP37|laXp180	ring finger protein 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33885828-4	chr16	33885737	33885937	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 5 of 14)	intron (NM_001145884, intron 5 of 14)	56172.0	NM_001145884	16419.0	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122207913-3	chr5	122207812	122208012	+	866.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1817.0	NM_001042489	74096.0	Mm.28804	NM_028752	ENSMUSG00000064267	Hvcn1	0610039P13Rik|AI450555|BTS|HV1|Vsop.|mVSOP	hydrogen voltage-gated channel 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-54910970-3	chr1	54910871	54911071	+	697.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081433, intron 1 of 27)	intron (NM_001081433, intron 1 of 27)	15416.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-59177748-4	chr4	59177643	59177843	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11807.0	NM_011673	22234.0	Mm.198803	NM_011673	ENSMUSG00000028381	Ugcg	AU043821|C80537|Epcs21|GlcT-1|Ugcgl	UDP-glucose ceramide glucosyltransferase	protein-coding	1.90312309616886	1.71364845887264	3.01691640670051	2.84817498262684	1.5331565316461	2.63602089227511	3.60518095579645	2.33235204037675	0.478766675176079	0.591234938169735	0.969871040218825
Merged-chr2-156705643-3	chr2	156705540	156705740	+	840.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146128, intron 4 of 12)	intron (NM_146128, intron 4 of 12)	15269.0	NR_040505	74846.0	Mm.443946	NR_040505	ENSMUSG00000086638	4930405A21Rik	-	RIKEN cDNA 4930405A21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127745940-4	chr7	127745836	127746036	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172748)	promoter-TSS (NM_172748)	-839.0	NM_172748	233902.0	Mm.259353	NM_172748	ENSMUSG00000030811	Fbxl19	6030430O11|BC059812|Fbl19	F-box and leucine-rich repeat protein 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-108316380-4	chr8	108316308	108316508	+	954.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	268269.0	NR_077224	109215.0	Mm.65282	NR_077224	ENSMUSG00000110613	Lncbate1	3010033K07Rik|Lnc-BATE1	brown adipose tissue enriched long non-coding RNA 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-112865609-2	chr12	112865509	112865709	+	686.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4693.0	NM_019925	56696.0	Mm.20455	NM_019925	ENSMUSG00000021298	Gpr132	G2a	G protein-coupled receptor 132	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-128727540-4	chr4	128727440	128727640	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001195083)	promoter-TSS (NM_001195083)	-31.0	NM_001195083	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	0.280316183126784	-0.399460872051102	-0.232183815818978	-0.40617248288709	-0.269517785648024	-0.398604053351127	-0.402418710726221	-0.244902748511219	-1.77204427503382	0.463345417715225	1
Merged-chr17-71214755-3	chr17	71214645	71214845	+	863.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164885, intron 1 of 19)	intron (NM_001164885, intron 1 of 19)	10091.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-72976880-2	chr12	72976780	72976980	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36998.0	NM_011384	20476.0	Mm.57138	NM_011384	ENSMUSG00000021099	Six6	Optx2|Six9	sine oculis-related homeobox 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-157502958-4	chr1	157502855	157503055	+	719.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151610, intron 1 of 2)	intron (NR_151610, intron 1 of 2)	-3841.0	NM_033354	89867.0	Mm.87114	NM_033354	ENSMUSG00000026589	Sec16b	Lztr2|Rgpr|Rgpr-p117	SEC16 homolog B (S. cerevisiae)	protein-coding	-1.3681463318974	-1.33624156493372	-1.34650167276047	-0.80669348975676	-1.36769697821496	-1.33401815676661	-1.34417900924365	-1.3534210303531	-2.3580830592467	0.49586638340111	1
Merged-chr7-101653875-3	chr7	101653801	101654001	+	787.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9867.0	NM_009191	20480.0	Mm.3990	NM_009191	ENSMUSG00000001829	Clpb	AL118244|Skd3	ClpB caseinolytic peptidase B	protein-coding	2.45947035244145	3.58341618514793	2.67758587182087	2.7278934136748	3.36121887910962	2.64167569495314	3.33883370297112	3.80506814373006	0.711866039508525	0.277166142650412	0.781366007374687
Merged-chr9-64021054-5	chr9	64020850	64021050	+	925.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008542, exon 1 of 4)	exon (NM_008542, exon 1 of 4)	1109.0	NM_008542	17130.0	Mm.325757	NM_008542	ENSMUSG00000036867	Smad6	Madh6|b2b390Clo	SMAD family member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100473193-2	chr11	100473093	100473293	+	691.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172565)	promoter-TSS (NM_172565)	-411.0	NM_172565	217194.0	Mm.183320	NM_172565	ENSMUSG00000048732	Klhl11	BC011167	kelch-like 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-47079433-2	chr7	47079333	47079533	+	630.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163565, intron 12 of 13)	intron (NM_001163565, intron 12 of 13)	3791.0	NR_106023	102465639.0		NR_106023	ENSMUSG00000098960	Mir7056	Gm27696|mmu-mir-7056	microRNA 7056	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-4717583-1	chr12	4717483	4717683	+	621.0	f0_balb.idr	intron (NM_029107, intron 7 of 7)	intron (NM_029107, intron 7 of 7)	20800.0	NM_029107	74855.0	Mm.269534	NM_029107	ENSMUSG00000079177	Fam228a	4930417G10Rik	family with sequence similarity 228, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-31602597-4	chr5	31602513	31602713	+	972.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11338.0	NM_025796	66845.0	Mm.120763	NM_025796	ENSMUSG00000106918	Mrpl33	0610009M10Rik|L33mt|MRP-L33	mitochondrial ribosomal protein L33	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-92457927-3	chr9	92457847	92458047	+	988.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178711, intron 1 of 8)	CpG	569.0	NM_178711	235527.0	Mm.55289	NM_178711	ENSMUSG00000032377	Plscr4	AV245873	phospholipid scramblase 4	protein-coding	-0.163875143438975	-0.150594443622348	0.0133679819774331	0.349837122008573	-0.163050356320349	-0.149607924445138	0.0178273089856321	0.35649833909389	0.0313285976741798	0.98887422078113	1
Merged-chr8-39619980-4	chr8	39619862	39620062	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_031195, exon 5 of 9)	exon (NM_031195, exon 5 of 9)	22716.0	NM_031195	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27538332-2	chr2	27538232	27538432	+	742.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23185.0	NM_080848	140858.0	Mm.28265	NM_080848	ENSMUSG00000026917	Wdr5	2410008O07Rik|AA408785|AA960360|Big|Big-3	WD repeat domain 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-79098846-2	chr11	79098746	79098946	+	707.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013571, intron 1 of 17)	intron (NM_013571, intron 1 of 17)	-39010.0	NM_001348207	16706.0	Mm.4745	NM_013571	ENSMUSG00000018334	Ksr1	AW492498|B-KSR1|D11Bhm183e|D11Bhm184e|Ksr|RSU2|hb|mKSR1	kinase suppressor of ras 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-92706666-2	chr16	92706566	92706766	+	841.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111022, intron 2 of 6)	intron (NM_001111022, intron 2 of 6)	-9337.0	NM_009821	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-11480426-2	chr8	11480326	11480526	+	646.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_126558)	TTS (NR_126558)	-1927.0	NM_011227	19332.0	Mm.37632	NM_011227	ENSMUSG00000031504	Rab20	AA536966|D8Ertd350e	RAB20, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-33739434-4	chr1	33739321	33739521	+	809.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008999, exon 8 of 8)	3' UTR (NM_008999, exon 8 of 8)	18329.0	NM_145392	213539.0	Mm.247037	NM_145392	ENSMUSG00000042215	Bag2	2610042A13Rik|BC016230	BCL2-associated athanogene 2	protein-coding	-0.499940950918087	-0.487518524828365	0.0891561271406926	-0.494726023626598	-0.499164980458282	-0.486601867615524	0.100277611126392	-0.494177430718284	0.0410194320726077	0.98816738256539	1
Merged-chr13-90924473-2	chr13	90924359	90924559	+	697.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_024175, intron 3 of 3)	AT_rich|Low_complexity|Low_complexity	1337.0	NM_024175	66475.0	Mm.306302	NM_024175	ENSMUSG00000049517	Rps23	2410044J15Rik	ribosomal protein S23	protein-coding	2.11766780273691	1.21832951036685	1.88703416746071	1.95036751552299	1.76069998652541	2.0913114337922	1.60879830089101	1.96024068330871	0.064603738410068	0.950025087129531	0.998431161219273
Merged-chr17-50025792-3	chr17	50025709	50025909	+	961.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181397, intron 7 of 9)	ORR1G|LTR|ERVL-MaLR	164688.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-140952450-4	chr4	140952327	140952527	+	962.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008812, exon 16 of 16)	3' UTR (NM_008812, exon 16 of 16)	5475.0	NR_045911	100126227.0	Mm.404073	NR_045911	ENSMUSG00000087698	Gm13031	-	predicted gene 13031	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-75576934-2	chr7	75576834	75577034	+	595.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 3 of 36)	ORR1D1|LTR|ERVL-MaLR	121400.0	NM_029332	75547.0	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-96891856-2	chr7	96891756	96891956	+	568.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011858, intron 29 of 32)	B4|SINE|B4	-59671.0	NM_153591	244141.0	Mm.274864	NM_153591	ENSMUSG00000018995	Nars2	AI875199	asparaginyl-tRNA synthetase 2 (mitochondrial)(putative)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-193799261-3	chr1	193799131	193799331	+	887.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-291701.0	NR_029592	387201.0		NR_029592	ENSMUSG00000065533	Mir205	Mirn205|mir-205|mmu-mir-205	microRNA 205	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-24040321-2	chr10	24040221	24040421	+	720.599976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	2707.0	NM_001010835	276742.0	Mm.377870	NM_001010835	ENSMUSG00000100689	Taar7e	Gm697|taR-7e	trace amine-associated receptor 7E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-79781495-2	chr7	79781395	79781595	+	710.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037927, intron 17 of 17)	intron (NM_001037927, intron 17 of 17)	12095.0	NM_008588	17292.0	Mm.1404	NM_008588	ENSMUSG00000030544	Mesp1	bHLHc5	mesoderm posterior 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-124033269-2	chr9	124033169	124033369	+	818.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11A|LTR|ERVK	11298.0	NM_009914	12771.0	Mm.57050	NM_009914	ENSMUSG00000035448	Ccr3	CC-CKR3|CKR3|Cmkbr1l2|Cmkbr3	chemokine (C-C motif) receptor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-58247290-4	chr9	58247226	58247426	+	933.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001311088, exon 2 of 9)	exon (NM_001311088, exon 2 of 9)	2460.0	NM_008884	18854.0	Mm.392123	NM_008884	ENSMUSG00000036986	Pml	1200009E24Rik|AI661194|Trim19	promyelocytic leukemia	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-149438117-2	chr3	149438017	149438217	+	625.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	163380.0	NR_040591	381482.0	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-108694854-4	chr5	108694730	108694930	+	866.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054071, intron 1 of 6)	CpG	601.0	NM_054071	116701.0	Mm.35691	NM_054071	ENSMUSG00000008090	Fgfrl1	FGFR5|FGFR5beta|FGFR5gamma	fibroblast growth factor receptor-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-48270025-4	chr17	48269929	48270129	+	942.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033922, intron 4 of 5)	intron (NM_001033922, intron 4 of 5)	5734.0	NM_001163796	224840.0	Mm.131234	NM_172623	ENSMUSG00000051682	Treml4	5031403H21Rik|BB137214|IDCP1|TLT-4|TLT4|Treml3	triggering receptor expressed on myeloid cells-like 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131095133-2	chr1	131095033	131095233	+	978.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008551, intron 1 of 9)	intron (NM_008551, intron 1 of 9)	2710.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	-0.284096113363765	-0.268441711400524	-0.273550909216678	0.475084907902659	-0.283113655627511	-0.26729253646236	-0.27242245526501	0.392321369710378	-0.233523492895852	0.927753466151174	1
Merged-chr7-45587726-2	chr7	45587626	45587826	+	786.666626	f1_balb.idr|f1_c57bl6.idr	exon (NM_009737, exon 7 of 11)	exon (NM_009737, exon 7 of 11)	-12550.0	NR_038165	71661.0	Mm.439894	NR_038165	ENSMUSG00000109644	0610005C13Rik	AI182092	RIKEN cDNA 0610005C13 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-75180802-4	chr14	75180647	75180847	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008879, intron 2 of 16)	intron (NM_008879, intron 2 of 16)	44322.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-60305788-3	chr11	60305681	60305881	+	893.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359810, intron 1 of 12)	intron (NM_001359810, intron 1 of 12)	47124.0	NM_153080	216810.0	Mm.218875	NM_153080	ENSMUSG00000000538	Tom1l2	2900016I08Rik|A730055F12Rik|AU042072|Srebf1	target of myb1-like 2 (chicken)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-80899892-4	chr13	80899788	80899988	+	673.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13793.0	NR_153411	105171.0	Mm.423137	NM_001042591	ENSMUSG00000074794	Arrdc3	AI450344|mKIAA1376	arrestin domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-32562916-2	chr4	32562816	32563016	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001109661, exon 3 of 5)	exon (NM_001109661, exon 3 of 5)	8746.0	NR_026843	414068.0	Mm.389550	NR_026843	ENSMUSG00000086150	Bach2os	-	BTB and CNC homology 2, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-64141511-4	chr7	64141399	64141599	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12336.0	NM_001039104	17364.0	Mm.38875	NM_018752	ENSMUSG00000030523	Trpm1	4732499L03Rik|AI606771|Ltrpc1|Mlsn1	transient receptor potential cation channel, subfamily M, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-79398571-3	chr11	79398465	79398665	+	846.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010897, intron 5 of 57)	Lx8|LINE|L1	58673.0	NM_010897	18015.0	Mm.255596	NM_010897	ENSMUSG00000020716	Nf1	AW494271|Dsk9|E030030H24Rik|Mhdadsk9|Nf-1	neurofibromin 1	protein-coding	-0.354568289396101	-0.337059887760252	-0.342743929669417	-0.347163429507212	0.0811876656952609	-0.335785351071051	0.693679296482352	-0.346389168944909	3.93753695883936	0.110995868713028	1
Merged-chr4-126023360-1	chr4	126023260	126023460	+	781.0	f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	-1299.0	NR_045561	12986.0	Mm.271701	NM_007782	ENSMUSG00000028859	Csf3r	Cd114|Csfgr|G-CSF-R|G-CSFR	colony stimulating factor 3 receptor (granulocyte)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-79528145-4	chr3	79528042	79528242	+	863.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162999, intron 1 of 16)	intron (NM_001162999, intron 1 of 16)	39537.0	NM_001162999	329679.0	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-118360046-4	chr4	118359926	118360126	+	955.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026601)	promoter-TSS (NM_026601)	27.0	NR_003946	68180.0	Mm.193212	NM_026601	ENSMUSG00000006395	Hyi	2700033B16Rik|6430559E15Rik|HT036	hydroxypyruvate isomerase (putative)	protein-coding	3.33141562647652	2.02831268315521	3.77855088674437	3.26163403903964	4.4344291033066	2.04761787080612	5.13354464871178	3.45992874848934	1.33751930443671	0.0583115292527155	0.356917478410832
Merged-chr2-157141347-1	chr2	157141247	157141447	+	541.0	f1_balb.idr	Intergenic	MusHAL1|LINE|L1	-6125.0	NM_018851	56045.0	Mm.248478	NM_018851	ENSMUSG00000027639	Samhd1	E330031J07Rik|Mg11	SAM domain and HD domain, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-32697286-2	chr16	32697186	32697386	+	880.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24132.0	NM_001289443	51789.0	Mm.251115	NM_016788	ENSMUSG00000022791	Tnk2	Ack|Ack-1|Ack1|Cdgip|Pyk1	tyrosine kinase, non-receptor, 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141221240-2	chr7	141221140	141221340	+	940.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_029793)	TTS (NR_029793)	253.0	NR_029793	387206.0		NR_029793	ENSMUSG00000065551	Mir210	Mirn210|mir-210|mmu-mir-210	microRNA 210	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-126021870-2	chr10	126021770	126021970	+	614.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	55651.0	NM_177152	320398.0	Mm.275586	NM_177152	ENSMUSG00000020105	Lrig3	9030421L11Rik|9130004I02Rik|9430095K15Rik|mKIAA3016	leucine-rich repeats and immunoglobulin-like domains 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-27725846-4	chr7	27725821	27726021	+	772.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F|LTR|ERVL-MaLR	-5488.0	NM_029531	22718.0	Mm.66913	NM_009560	ENSMUSG00000037640	Zfp60	6330516O17Rik|AI426106|AI449354|Mfg-3|Mfg3	zinc finger protein 60	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125332969-4	chr6	125332842	125333042	+	996.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011324, intron 3 of 11)	intron (NM_011324, intron 3 of 11)	11602.0	NM_011324	20276.0	Mm.144114	NM_011324	ENSMUSG00000030340	Scnn1a	ENaC|SCNEA|Scnn1|mENaC	sodium channel, nonvoltage-gated 1 alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-20152527-2	chr18	20152427	20152627	+	591.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37754.0	NM_013504	13505.0	Mm.33740	NM_013504	ENSMUSG00000044322	Dsc1	1110020A10Rik|AI507491	desmocollin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80413688-2	chr10	80413588	80413788	+	569.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164153, intron 16 of 18)	B1_Mus1|SINE|Alu	-6867.0	NM_025650	66594.0	Mm.379119	NM_025650	ENSMUSG00000020163	Uqcr11	0710008D09Rik|AL022707|Uqcr	ubiquinol-cytochrome c reductase, complex III subunit XI	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-80038029-2	chr12	80037929	80038129	+	784.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	74984.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-53192733-2	chr2	53192633	53192833	+	606.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_022989, intron 1 of 3)	intron (NM_022989, intron 1 of 3)	649.0	NM_022989	65103.0	Mm.37623	NM_022989	ENSMUSG00000026960	Arl6ip6	2310057C01Rik|2610529A11Rik|Aip-6	ADP-ribosylation factor-like 6 interacting protein 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-22445065-4	chr16	22444956	22445156	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger15a|DNA|TcMar-Tigger	-5486.0	NM_023794	104156.0	Mm.155708	NM_023794	ENSMUSG00000013089	Etv5	1110005E01Rik|8430401F14Rik|ERM	ets variant 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-12768869-7	chr17	12768706	12768906	+	839.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010515, intron 1 of 47)	intron (NM_010515, intron 1 of 47)	900.0	NM_010515	16004.0	Mm.26553	NM_010515	ENSMUSG00000023830	Igf2r	AI661837|CD222|CI-MPR|M6P/IGF2R|Mpr300	insulin-like growth factor 2 receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-112284548-1	chr5	112284448	112284648	+	625.0	f1_balb.idr	intron (NM_001326590, intron 1 of 5)	intron (NM_001326590, intron 1 of 5)	7857.0	NM_009419	22022.0	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-49151711-3	chr10	49151616	49151816	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358866, intron 14 of 16)	ERVB4_3-LTR_MM|LTR|ERVK	636221.0	NM_001358866	14806.0	Mm.185993	NM_010349	ENSMUSG00000056073	Grik2	AW124492|C130030K03Rik|GluK2|Glur-6|Glur6|Glurbeta2	glutamate receptor, ionotropic, kainate 2 (beta 2)	protein-coding	1.5791550648321	1.5602767970091	2.81514079573947	1.40975316600902	4.6084131136994	5.20762260746854	4.30584440271088	4.40000122816612	4.36314640157944	8.72089479334952e-10	1.42681766905374e-07
Merged-chr1-74249775-2	chr1	74249675	74249875	+	793.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357387, intron 4 of 10)	B1F1|SINE|Alu	13258.0	NM_029711	76709.0	Mm.337038	NM_029711	ENSMUSG00000006304	Arpc2	2210023N03Rik|34kDa|p34-Arc	actin related protein 2/3 complex, subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-95019541-4	chr13	95019423	95019623	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172590, intron 12 of 12)	intron (NM_172590, intron 12 of 12)	43179.0	NM_172590	218460.0	Mm.33856	NM_172590	ENSMUSG00000042015	Wdr41	B830029I03Rik|MSTP048	WD repeat domain 41	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30133739-4	chr2	30133629	30133829	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146252)	promoter-TSS (NM_146252)	-17.0	NM_146252	70296.0	Mm.19172	NM_146252	ENSMUSG00000039678	Tbc1d13	2600014A06Rik|BC025586	TBC1 domain family, member 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-26794890-2	chr10	26794790	26794990	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_176837, intron 1 of 14)	intron (NM_176837, intron 1 of 14)	22378.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191071126-5	chr1	191071045	191071245	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198654, intron 3 of 5)	intron (NM_198654, intron 3 of 5)	8124.0	NM_198654	381318.0	Mm.32504	NM_198654	ENSMUSG00000062510	Nsl1	4833432M17Rik|AI451597|Gm105|Gm984	NSL1, MIS12 kinetochore complex component	protein-coding	0.644625433028189	1.4949628824365	0.876125210148736	0.66080522564918	1.20678962331786	0.911396429626289	1.6407276349247	1.01997087960334	1.06334768206739	0.465931799749428	0.922774431844435
Merged-chr5-115522759-1	chr5	115522659	115522859	+	611.0	f1_balb.idr	intron (NM_011223, intron 1 of 10)	PB1|SINE|Alu	16083.0	NM_133915	19303.0	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	1.48740515909319	1.17335887457048	2.08101471236044	2.78033551527395	1.31108621064624	2.6123808371176	2.2199123398384	1.57629415693031	-0.0251791787223041	0.981302176312927	0.998431161219273
Merged-chr5-92092745-2	chr5	92092645	92092845	+	956.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359197, intron 1 of 10)	intron (NM_001359197, intron 1 of 10)	-9001.0	NM_001080795	23881.0	Mm.290530	NM_011816	ENSMUSG00000029405	G3bp2	AA409541|E430034L04Rik|G3BP|mKIAA0660	GTPase activating protein (SH3 domain) binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-113878854-2	chr13	113878754	113878954	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172595, intron 1 of 4)	intron (NM_172595, intron 1 of 4)	84346.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-21265799-3	chr12	21265697	21265897	+	820.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004364, intron 25 of 26)	intron (NM_001004364, intron 25 of 26)	20487.0	NM_008403	16413.0	Mm.273333	NM_008403	ENSMUSG00000062352	Itgb1bp1	AI449260|AU019480|Icap1	integrin beta 1 binding protein 1	protein-coding	1.88078958850293	3.02962668625226	2.45817686042309	1.34909475137338	2.47898655464089	2.29250127228669	2.2148507920228	3.00113608636978	0.420062570563827	0.640700188217471	0.982599433509505
Merged-chr12-108999008-2	chr12	108998908	108999108	+	646.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177602, intron 4 of 6)	intron (NM_177602, intron 4 of 6)	69209.0	NM_001163175	380785.0	Mm.342085	NM_001163175	ENSMUSG00000040867	Begain	BM948371|Gm897	brain-enriched guanylate kinase-associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-17170135-3	chr11	17170058	17170258	+	931.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024459, intron 1 of 5)	intron (NM_024459, intron 1 of 5)	10860.0	NM_024459	19058.0	Mm.41840	NM_024459	ENSMUSG00000033953	Ppp3r1	CaNB1|Cnb1|MCIP1	protein phosphatase 3, regulatory subunit B, alpha isoform (calcineurin B, type I)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118226706-2	chr11	118226606	118226806	+	615.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	-13964.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-75577490-2	chr7	75577390	75577590	+	776.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 3 of 36)	ORR1D1-int|LTR|ERVL-MaLR	121956.0	NM_029332	75547.0	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-34539821-2	chr15	34539721	34539921	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44510.0	NM_152894	67724.0	Mm.248779	NM_026340	ENSMUSG00000022325	Pop1	4932434G09Rik	processing of precursor 1, ribonuclease P/MRP family, (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-118707994-2	chr7	118707909	118708109	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2271.0	NM_019580	56209.0	Mm.273142	NM_019580	ENSMUSG00000033917	Gde1	1200003M13Rik|Mir16|RGS16	glycerophosphodiester phosphodiesterase 1	protein-coding	0.556022081090449	0.688014140780737	0.203007037271977	0.198486256102343	0.660886598522947	0.697461278924448	0.204300374783338	0.19927564730613	0.227147442901377	0.908828444502486	1
Merged-chr12-69448070-4	chr12	69447975	69448175	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27475.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	5.30556270402054	5.09775183214229	4.28246783651007	5.07116257251152	5.29514784642126	5.51640894453628	5.05663804890226	5.06052629179744	0.291386446352435	0.373749002821994	0.866799072653019
Merged-chr16-49852198-2	chr16	49852098	49852298	+	747.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR18D_MM|LTR|ERVK	-3456.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-87617525-4	chr3	87617401	87617601	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001003912)	promoter-TSS (NM_001003912)	-58.0	NM_001360197	213498.0	Mm.287267	NM_001003912	ENSMUSG00000041977	Arhgef11	PDZ-RhoGEF|Prg|RhoGEF|mKIAA0380	Rho guanine nucleotide exchange factor (GEF) 11	protein-coding	2.43173612091626	1.8120241782203	1.7627090350878	1.72405108504909	2.5707002051719	2.13559127240608	2.302221029367	1.87729968058856	0.727201157197681	0.429902209220998	0.904095509792853
Merged-chr18-65501558-1	chr18	65501458	65501658	+	727.666687	f0_balb.idr	intron (NR_105742, intron 3 of 6)	intron (NR_105742, intron 3 of 6)	70561.0	NM_172833	240354.0	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	1.90331124930915	1.25422141186977	1.93868338141543	1.7542020438907	2.40682716832912	1.87308784971826	1.95341737188194	2.119001819804	1.03242144741937	0.298258503868592	0.800257675359925
Merged-chr7-101386955-2	chr7	101386879	101387079	+	892.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001040111, intron 8 of 33)	intron (NM_001040111, intron 8 of 33)	1453.0	NM_027180	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140615519-2	chr5	140615419	140615619	+	943.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_008494)	TTS (NM_008494)	8178.0	NM_008494	16848.0	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-72958795-4	chr9	72958690	72958890	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026314)	promoter-TSS (NM_026314)	5.0	NM_001163725	67685.0	Mm.31817	NM_026314	ENSMUSG00000092192	Dyx1c1	1700010I24Rik|Dnaaf4|EKN1|b2b811.1Clo|b2b811Clo	dyslexia susceptibility 1 candidate 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-36253795-2	chr8	36253693	36253893	+	892.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4277.0	NM_001081150	244421.0	Mm.324032	NM_001081150	ENSMUSG00000039633	Lonrf1	-	LON peptidase N-terminal domain and ring finger 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101466852-2	chr11	101466752	101466952	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_012037)	promoter-TSS (NM_012037)	-653.0	NM_012037	26949.0	Mm.29210	NM_012037	ENSMUSG00000034993	Vat1	VAT-1	vesicle amine transport 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-43782702-4	chr7	43782624	43782824	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133712, intron 2 of 5)	intron (NM_133712, intron 2 of 5)	1670.0	NM_133712	69540.0	Mm.46421	NM_133712	ENSMUSG00000030693	Klk10	2300002A13Rik|NES1|PRSSL1	kallikrein related-peptidase 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-19596798-4	chr10	19596670	19596870	+	900.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010511, intron 1 of 6)	MTEb|LTR|ERVL-MaLR	4821.0	NM_010511	15979.0	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28371687-5	chr7	28371642	28371842	+	824.200012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001290542, exon 1 of 19)	5' UTR (NM_001290542, exon 1 of 19)	920.0	NM_138752	101497.0	Mm.235700	NM_138752	ENSMUSG00000037552	Plekhg2	AI194308|Clg|Cslg	pleckstrin homology domain containing, family G (with RhoGef domain) member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97151113-2	chr11	97151013	97151213	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1401.0	NM_198100	73174.0	Mm.27882	NM_198100	ENSMUSG00000038517	Tbkbp1	3110043L15Rik|ProSAPiP2|SINTBAD	TBK1 binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-84088170-4	chr18	84088046	84088246	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146090)	promoter-TSS (NM_146090)	-12.0	NM_146090	225791.0	Mm.147052	NM_146090	ENSMUSG00000049090	Zadh2	C530046K17Rik|PTGR-3|Pthr3	zinc binding alcohol dehydrogenase, domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19445341-2	chr7	19445241	19445441	+	701.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172279, intron 6 of 16)	intron (NM_172279, intron 6 of 16)	13153.0	NM_172279	232944.0	Mm.260504	NM_172279	ENSMUSG00000030397	Mark4	2410090P21Rik|C79806|Markl1	MAP/microtubule affinity regulating kinase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-30674928-4	chr10	30674804	30675004	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358842, intron 9 of 14)	intron (NM_001358842, intron 9 of 14)	-19037.0	NM_001111267	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-76973663-4	chr5	76973588	76973788	+	902.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1013.0	NM_025691	66661.0	Mm.296976	NM_025691	ENSMUSG00000036323	Srp72	5730576P14Rik|72kDa|AI132477|BC019196|C77589	signal recognition particle 72	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171130037-3	chr1	171129922	171130122	+	922.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025321, intron 5 of 5)	intron (NM_025321, intron 5 of 5)	8361.0	NM_001081275	75472.0	Mm.32760	NM_029301	ENSMUSG00000026649	Cfap126	1700009P17Rik|AV282292|Flattop|Fltp	cilia and flagella associated protein 126	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-120932660-2	chr9	120932560	120932760	+	549.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001165902)	promoter-TSS (NM_001165902)	-740.0	NM_007614	12387.0	Mm.291928	NM_007614	ENSMUSG00000006932	Ctnnb1	Bfc|Catnb|Mesc	catenin (cadherin associated protein), beta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55736488-4	chr14	55736403	55736603	+	883.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	9181.0	NM_026819	52585.0	Mm.21623	NM_026819	ENSMUSG00000002332	Dhrs1	1110029G07Rik|AW112170|D14Ertd484e	dehydrogenase/reductase (SDR family) member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-106770976-4	chr4	106770909	106771109	+	952.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025590, intron 2 of 15)	intron (NM_025590, intron 2 of 15)	28822.0	NM_025590	329910.0	Mm.222956	NM_025590	ENSMUSG00000034853	Acot11	1110020M10Rik|2010309H15Rik|AW060409|BFIT|BFIT1|Thea|Them1|mKIAA0707	acyl-CoA thioesterase 11	protein-coding	0.646747612651678	1.40801222941223	0.504469142582102	0.496659643603673	0.916132175520628	1.20036207929894	0.506688505907667	0.977904266346032	0.401696988966786	0.806020281482062	0.998431161219273
Merged-chr1-23202790-4	chr1	23202670	23202870	+	948.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69499.0	NR_029533	387225.0		NR_029533	ENSMUSG00000065405	Mir30a	Mirn30a|mir-30a|mmu-mir-30a	microRNA 30a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-80383876-4	chr11	80383712	80383912	+	968.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045038, intron 1 of 16)	intron (NR_045038, intron 1 of 16)	533.0	NM_001130171	22680.0	Mm.401332	NM_011751	ENSMUSG00000017421	Zfp207	8430401D15Rik|BuGZ|Zep|Znf207	zinc finger protein 207	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-104398648-4	chr7	104398549	104398749	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40003.0	NM_175648	244183.0	Mm.347647	NM_175648	ENSMUSG00000052749	Trim30b	A530023O14Rik|Trim30-1	tripartite motif-containing 30B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-104938706-2	chr5	104938576	104938776	+	663.5	f0_balb.idr|f1_balb.idr	intron (NM_030239, intron 14 of 15)	intron (NM_030239, intron 14 of 15)	44041.0	NM_030239	27405.0	Mm.389663	NM_030239	ENSMUSG00000029299	Abcg3	Abcp2|Mxr2	ATP binding cassette subfamily G member 3	protein-coding	0.610064043576104	0.65690541738454	0.641964923138284	0.630178089810764	1.60526360894252	1.55133849344742	1.06471278659882	1.79129533195702	5.02263215503334	0.00130004908708654	0.0240957604740438
Merged-chr12-40381381-4	chr12	40381285	40381485	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178845, intron 1 of 11)	intron (NM_178845, intron 1 of 11)	64405.0	NM_172575	246196.0	Mm.26852	NM_172575	ENSMUSG00000055917	Zfp277	2410017E24Rik|NIRF4	zinc finger protein 277	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117991286-2	chr11	117991186	117991386	+	554.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_151726, intron 1 of 9)	ID_B1|SINE|B4	4429.0	NR_151726	74451.0	Mm.28864	NM_133757	ENSMUSG00000017715	Pgs1	2610019F11Rik|4933424M23Rik|SAF	phosphatidylglycerophosphate synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-17125570-4	chr19	17125490	17125690	+	977.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_181348, exon 9 of 20)	exon (NM_181348, exon 9 of 20)	169472.0	NM_181348	353211.0	Mm.257354	NM_181348	ENSMUSG00000039126	Prune2	6330414G02Rik|A230083H22Rik|A330102H22Rik|Bmcc1|mKIAA0367	prune homolog 2	protein-coding	0.396759566466222	0.425372584414245	0.416103418988059	1.43465364849714	0.826007547639389	0.645134258562418	0.619144149411067	1.00485114453136	0.012202305570695	0.994286999936009	1
Merged-chr18-35919001-2	chr18	35918901	35919101	+	594.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45829.0	NM_001289602	74002.0	Mm.196944	NM_028707	ENSMUSG00000024347	Psd2	6330404E20Rik|AW125584|EFA6C	pleckstrin and Sec7 domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-96038562-2	chr10	96038462	96038662	+	669.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001932, intron 24 of 28)	MTD|LTR|ERVL-MaLR	97899.0	NM_001001932	216238.0	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-92950989-2	chr1	92950889	92951089	+	596.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015525)	promoter-TSS (NR_015525)	-399.0	NR_015525	100037260.0	Mm.442236	NR_015525	ENSMUSG00000100632	9430060I03Rik	-	RIKEN cDNA 9430060I03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-120287935-4	chr4	120287832	120288032	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_194060)	promoter-TSS (NM_194060)	-671.0	NM_194060	329934.0	Mm.277090	NM_194060	ENSMUSG00000052135	Foxo6	-	forkhead box O6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81250047-2	chr10	81249947	81250147	+	681.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001034895, intron 16 of 17)	intron (NM_001034895, intron 16 of 17)	-2888.0	NM_001285855	17179.0	Mm.2918	NM_010768	ENSMUSG00000004933	Matk	CHK|HYL|Ntk|p56ntk	megakaryocyte-associated tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-65998200-1	chr5	65998100	65998300	+	548.0	f1_balb.idr	intron (NR_027961, intron 4 of 6)	ORR1A4|LTR|ERVL-MaLR	6085.0	NR_027961	231253.0	Mm.436542	NM_177679	ENSMUSG00000054598	9130230L23Rik	-	RIKEN cDNA 9130230L23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-107497027-4	chr1	107496937	107497137	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14386.0	NM_001174170	18788.0	Mm.271870	NM_011111	ENSMUSG00000062345	Serpinb2	PAI-2|Planh2|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-21190556-2	chr5	21190456	21190656	+	702.166626	f1_balb.idr|f1_c57bl6.idr	intron (NR_153365, intron 1 of 26)	intron (NR_153365, intron 1 of 26)	4289.0	NM_001359877	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-35116932-4	chr9	35116819	35117019	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009178)	promoter-TSS (NM_009178)	-55.0	NM_009178	20443.0	Mm.275973	NM_009178	ENSMUSG00000032038	St3gal4	SIAT4-C|ST3Gal IV|ST3GalIV|Siat4c	ST3 beta-galactoside alpha-2,3-sialyltransferase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-42678889-4	chr10	42678800	42679000	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172416)	promoter-TSS (NM_172416)	-16.0	NM_172416	14628.0	Mm.46636	NM_172416	ENSMUSG00000038280	Ostm1	1200002H13Rik|HSPC019|gl	osteopetrosis associated transmembrane protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-25445291-4	chr8	25445219	25445419	+	929.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-73440.0	NM_001079909	14182.0	Mm.265716	NM_010206	ENSMUSG00000031565	Fgfr1	AW208770|Eask|FGFR-I|FLG|Fgfr-1|Flt-2|Hspy|MFR|bFGF-R-1|c-fgr	fibroblast growth factor receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133397762-2	chr4	133397662	133397862	+	646.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016981, intron 1 of 11)	intron (NM_016981, intron 1 of 11)	27986.0	NR_039582	100628620.0		NR_039582	ENSMUSG00000092745	Mir5122	mmu-mir-5122|mu-mir-5122	microRNA 5122	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-135583578-1	chr1	135583478	135583678	+	548.0	f1_balb.idr	intron (NM_173437, intron 1 of 28)	intron (NM_173437, intron 1 of 28)	1777.0	NM_173437	215690.0	Mm.34977	NM_173437	ENSMUSG00000009418	Nav1	9530089B19|9930003A20Rik|C230080M11Rik|Gm38399|Pomfil3|Unc53h1|mKIAA1151|steerin-1	neuron navigator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25249368-5	chr7	25249284	25249484	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010155, intron 1 of 3)	CpG	1374.0	NM_010155	13875.0	Mm.8068	NM_010155	ENSMUSG00000040857	Erf	-	Ets2 repressor factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-12567170-4	chr19	12567076	12567276	+	769.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6334.0	NM_001346545	107373.0	Mm.1643	NM_026640	ENSMUSG00000024691	Fam111a	4632417K18Rik|AW413625	family with sequence similarity 111, member A	protein-coding	0.340384398072069	0.690630596089826	0.216871728905029	0.719132542932724	0.569440565834865	0.223740041549112	0.218105995778406	0.505035225680478	-0.844468537467833	0.651401110300309	1
Merged-chr2-160374422-3	chr2	160374319	160374519	+	900.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7354.0	NM_010658	16658.0	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44129184-2	chr9	44129096	44129296	+	834.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_152189, intron 1 of 1)	RMER4A|LTR|ERVK	5289.0	NR_152189	100038560.0	Mm.429758	NR_152189		Gm10687	-	predicted gene 10687	ncRNA	-1.43172712806865	-1.3992492906874	-1.40907085678131	-1.41713858359971	-0.932192548427885	-1.39712091634321	-1.40684746950024	-1.41569446435649	2.19283191591698	0.528233640655333	1
Merged-chr10-68446043-3	chr10	68445943	68446143	+	964.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028491, intron 5 of 7)	intron (NM_028491, intron 5 of 7)	95832.0	NM_028491	73287.0	Mm.141830	NM_028491	ENSMUSG00000019945	Cabcoco1	1700040L02Rik	ciliary associated calcium binding coiled-coil 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-58986524-2	chr9	58986424	58986624	+	642.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008684, intron 2 of 28)	L1MC4|LINE|L1	49917.0	NM_001042752	18007.0	Mm.42249	NM_008684	ENSMUSG00000032340	Neo1	2610028H22Rik|AI327052|D930014N22Rik|Igdcc2	neogenin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-55837204-2	chr16	55837104	55837304	+	899.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159395, intron 1 of 12)	(CAAA)n|Simple_repeat|Simple_repeat	1437.0	NM_030612	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-91039934-2	chr1	91039834	91040034	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111312, intron 1 of 12)	intron (NM_001111312, intron 1 of 12)	-13510.0	NM_001111311	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-12051324-3	chr2	12051219	12051419	+	714.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-249927.0	NR_040353	338535.0	Mm.483275	NR_040353	ENSMUSG00000086843	E030013I19Rik	-	RIKEN cDNA E030013I19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-90822332-1	chr7	90822232	90822432	+	651.0	f0_balb.idr	Intergenic	Intergenic	-268454.0	NM_011807	23859.0	Mm.147213	NM_011807	ENSMUSG00000052572	Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|Gm21505|PSD93	discs large MAGUK scaffold protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-166138340-4	chr1	166138247	166138447	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360925, intron 1 of 5)	intron (NM_001360925, intron 1 of 5)	8126.0	NM_001360925	59290.0	Mm.46357	NM_021610	ENSMUSG00000000544	Gpa33	2010310L10Rik|2210401D16Rik|BB116197|mA33	glycoprotein A33 (transmembrane)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85975002-2	chr12	85974902	85975102	+	793.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347395, intron 29 of 32)	L1MB3|LINE|L1	104039.0	NM_009368	21809.0	Mm.3992	NM_009368	ENSMUSG00000021253	Tgfb3	TGF-beta-3|Tgfb-3	transforming growth factor, beta 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-47471010-2	chr9	47470910	47471110	+	783.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59160.0	NM_001310841	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-96517654-4	chr9	96517562	96517762	+	896.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38987.0	NM_001311135	19823.0	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27571450-4	chr17	27571324	27571524	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20A2|LTR|ERVK	-5697.0	NM_001002895	106672.0	Mm.61488	NM_001002895	ENSMUSG00000062753	AI413582	AI854251|Smim29	expressed sequence AI413582	protein-coding	3.95509038114608	4.22958630119717	4.44073893551725	4.55528734269699	3.98742938414618	3.86755145182472	4.86682374587244	4.84320673634293	0.207408411803711	0.626667649777535	0.980912176761026
Merged-chr4-88186124-4	chr4	88186028	88186228	+	950.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081184, intron 10 of 43)	intron (NM_001081184, intron 10 of 43)	64088.0	NR_030478	735282.0		NR_030478	ENSMUSG00000070077	Mir491	Mirn491|mir-491|mmu-mir-491	microRNA 491	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-113337419-4	chr13	113337459	113337659	+	884.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	127900.0	NM_023612	71690.0	Mm.38929	NM_023612	ENSMUSG00000042379	Esm1	0610042H23Rik|AV004503|ESM-1	endothelial cell-specific molecule 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35239790-2	chr17	35239690	35239890	+	652.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-1956.0	NM_019693	53817.0	Mm.439827	NM_019693	ENSMUSG00000019432	Ddx39b	0610030D10Rik|AI428441|Bat-1|Bat1|Bat1a|D17H6S81E|D17H6S81E-1|D6S81Eh	DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B	protein-coding	2.48351155504577	2.8980537768771	1.7502165063476	3.12202720079075	2.50458242418928	2.9194937502701	1.7632230318253	3.13772867797174	0.0353930610967976	0.965561051838187	0.998431161219273
Merged-chr14-83147912-2	chr14	83147812	83148012	+	647.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	927378.0	NR_153783	102635012.0	Mm.399509	NR_153783	ENSMUSG00000115043	Gm32455	-	predicted gene, 32455	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-8328668-2	chr17	8328568	8328768	+	561.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-11738.0	NR_028280	320111.0	Mm.442510	NM_178774	ENSMUSG00000055945	Prr18	9630019K15Rik	proline rich 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-82128697-2	chr15	82128597	82128797	+	965.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_137170, intron 1 of 5)	MIRc|SINE|MIR	722.0	NR_137170	76457.0	Mm.440373	NM_172428	ENSMUSG00000068114	Ccdc134	2310042L06Rik|AW208859	coiled-coil domain containing 134	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-70833265-4	chr9	70833166	70833366	+	994.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001324473, intron 1 of 8)	intron (NM_001324473, intron 1 of 8)	101542.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-69885962-2	chr2	69885862	69886062	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029280)	promoter-TSS (NM_029280)	-347.0	NR_110977	75422.0	Mm.10508	NM_029280	ENSMUSG00000051730	Mettl5	2810410A08Rik	methyltransferase like 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105900404-4	chr8	105900299	105900499	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173432)	promoter-TSS (NM_173432)	-75.0	NM_173432	244631.0	Mm.27627	NM_173432	ENSMUSG00000048310	Pskh1	AW539964|E130013P03Rik|b2b1230Clo	protein serine kinase H1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-98893734-4	chr10	98893684	98893884	+	886.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-20858.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-28495237-4	chr2	28495134	28495334	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MERV1_I-int|LTR|ERV1	-1657.0	NM_139197	227671.0	Mm.484270	NM_139197	ENSMUSG00000026829	Gbgt1	Fgs|Fs	globoside alpha-1,3-N-acetylgalactosaminyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-22163902-4	chr10	22163807	22164007	+	732.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359809, intron 1 of 7)	IAPEY4_LTR|LTR|ERVK	5298.0	NM_009016	19368.0	Mm.458004	NM_009016		Raet1a	RAE-1alpha|Rae1alpha|Raet1	retinoic acid early transcript 1, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123864224-5	chr5	123864084	123864284	+	904.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_030701, exon 1 of 1)	3' UTR (NM_030701, exon 1 of 1)	1332.0	NM_030701	80885.0	Mm.440567	NM_030701	ENSMUSG00000045502	Hcar2	Gpr109a|Gpr109b|HM74|Niacr1|PUMA-G|Pumag|mHM74b	hydroxycarboxylic acid receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-74248937-4	chr1	74248827	74249027	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357387, intron 4 of 10)	intron (NM_001357387, intron 4 of 10)	12410.0	NM_029711	76709.0	Mm.337038	NM_029711	ENSMUSG00000006304	Arpc2	2210023N03Rik|34kDa|p34-Arc	actin related protein 2/3 complex, subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-29435611-2	chr5	29435511	29435711	+	551.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001033457, exon 1 of 11)	exon (NM_001033457, exon 1 of 11)	944.0	NM_001033457	433864.0	Mm.262815	NM_001033457	ENSMUSG00000001569	Nom1	D5Kng1|Gm1040	nucleolar protein with MIF4G domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-125141682-2	chr5	125141585	125141785	+	911.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_011424, intron 1 of 46)	intron (NM_011424, intron 1 of 46)	37529.0	NM_001253905	20602.0	Mm.278646	NM_011424	ENSMUSG00000029478	Ncor2	N-CoR|SMRT|SMRTe	nuclear receptor co-repressor 2	protein-coding	0.39625646022356	0.439559936180408	0.425770567048206	0.635938249713441	0.39907097770496	1.67650048963206	0.862477203251355	1.60663092479871	4.10421918811426	0.0176965929857006	0.163914350984897
Merged-chr3-121630800-4	chr3	121630693	121630893	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12692.0	NR_036456	100503044.0	Mm.65320	NM_176992	ENSMUSG00000044522	A730020M07Rik	-	RIKEN cDNA A730020M07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-40927205-2	chr14	40927105	40927305	+	591.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145928, intron 2 of 8)	intron (NM_145928, intron 2 of 8)	21004.0	NM_001316748	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-52471690-4	chr2	52471583	52471783	+	842.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037099, intron 4 of 13)	intron (NM_001037099, intron 4 of 13)	-46809.0	NM_182994	75423.0	Mm.314378	NM_182994	ENSMUSG00000036093	Arl5a	2410015N24Rik|2810410P22Rik|AA408731|AW610751|Arl5|T25534	ADP-ribosylation factor-like 5A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-106416588-2	chr8	106416488	106416688	+	657.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011764, intron 1 of 3)	B3A|SINE|B2	1249.0	NM_011764	22751.0	Mm.295582	NM_011764	ENSMUSG00000031907	Zfp90	6430515L01Rik|KRAB17|NK10|Zfp64|Zfp83|mKIAA1954	zinc finger protein 90	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10356966-2	chr19	10356866	10357066	+	728.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32124.0	NM_018801	54525.0	Mm.182654	NM_018801	ENSMUSG00000024743	Syt7	AI851541|B230112P13Rik	synaptotagmin VII	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-84935797-2	chr17	84935700	84935900	+	677.200012	f0_balb.idr|f0_c57.idr	intron (NR_027929, intron 2 of 3)	intron (NR_027929, intron 2 of 3)	-20941.0	NM_001159497	19043.0	Mm.249695	NM_011151	ENSMUSG00000061130	Ppm1b	PP2CB	protein phosphatase 1B, magnesium dependent, beta isoform	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-116334138-2	chr9	116334038	116334238	+	580.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	144958.0	NR_152204	100043817.0	Mm.404276	NR_152204		Gm4668	-	predicted gene 4668	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101085455-2	chr11	101085355	101085555	+	954.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_155015, intron 5 of 8)	intron (NR_155015, intron 5 of 8)	-1835.0	NM_011550	21428.0	Mm.628	NM_011550	ENSMUSG00000017801	Mlx	Tcfl4|Tf4|bHLHd13	MAX-like protein X	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-64539248-2	chr1	64539148	64539348	+	789.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037726, intron 1 of 6)	intron (NM_001037726, intron 1 of 6)	6444.0	NM_001037726	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-74848256-4	chr11	74848257	74848457	+	702.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_197943)	TTS (NM_197943)	17433.0	NM_010813	17428.0	Mm.3759	NM_010813	ENSMUSG00000000282	Mnt	Rox|bHLHd3	max binding protein	protein-coding	0.642574483222001	1.33414515369291	0.664730375890366	1.23537436182563	1.17181040462254	1.21626390149477	0.667081605922839	1.24307067381457	0.361218432918254	0.814628195479334	0.998431161219273
Merged-chr13-59767640-2	chr13	59767540	59767740	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026921, intron 1 of 3)	intron (NM_026921, intron 1 of 3)	2149.0	NM_026921	69046.0	Mm.7884	NM_026921	ENSMUSG00000044792	Isca1	1810010A06Rik|Hbld2	iron-sulfur cluster assembly 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-114368286-1	chr9	114368186	114368386	+	730.0	f0_balb.idr	promoter-TSS (NR_040383)	promoter-TSS (NR_040383)	-38.0	NR_040383	75116.0	Mm.72675	NR_040383	ENSMUSG00000074039	4930520O04Rik	-	RIKEN cDNA 4930520O04 gene	ncRNA	-1.84354474832578	-1.81325489144778	-1.53416061964661	-1.82993901100912	-1.8414184563789	-1.81126990231468	-1.82034119297928	-1.82859217979378	-1.52252619601533	0.665276690233728	1
Merged-chr15-76666435-2	chr15	76666337	76666537	+	876.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358910, intron 15 of 18)	intron (NM_001358910, intron 15 of 18)	3511.0	NM_007989	14106.0	Mm.42011	NM_007989	ENSMUSG00000033837	Foxh1	Fast1|Fast2|fast-1|fast-2	forkhead box H1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-132247768-4	chr2	132247662	132247862	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001141971)	promoter-TSS (NM_001141971)	26.0	NM_027478	70612.0	Mm.30116	NM_027478	ENSMUSG00000027341	Tmem230	5730494N06Rik|AA407821	transmembrane protein 230	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-119157904-4	chr12	119157810	119158010	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	80366.0	NM_177290	320910.0	Mm.217000	NM_177290	ENSMUSG00000025321	Itgb8	4832412O06Rik	integrin beta 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-119809629-2	chr8	119809529	119809729	+	975.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028071, exon 4 of 4)	3' UTR (NM_028071, exon 4 of 4)	30950.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-35932439-4	chr3	35932345	35932545	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001205362)	promoter-TSS (NM_001205362)	-111.0	NM_001205362	114893.0	Mm.374810	NM_033623	ENSMUSG00000027708	Dcun1d1	Rp42|SCCRO|Tes3|pTes3	DCN1, defective in cullin neddylation 1, domain containing 1 (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80841553-2	chr7	80841453	80841653	+	790.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20555.0	NM_009553	22691.0	Mm.358645	NM_009553	ENSMUSG00000038797	Zscan2	Zfp-29|Zfp29	zinc finger and SCAN domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-7244988-3	chr9	7244923	7245123	+	927.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-27491.0	NM_008607	17386.0	Mm.5022	NM_008607	ENSMUSG00000050578	Mmp13	Clg|MMP-13|Mmp1	matrix metallopeptidase 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-83691707-4	chr9	83691569	83691769	+	807.416626	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_046066, intron 1 of 2)	intron (NR_046066, intron 1 of 2)	194.0	NR_046066	100039222.0	Mm.405596	NR_046066	ENSMUSG00000100155	Gm2109	-	predicted gene 2109	ncRNA	-0.142154436469793	-0.0847525399512592	0.147544348499232	-0.263945713365612	-0.138559315402654	-0.0805216380147879	-0.0993847037491631	-0.263475879954353	-0.724132580112649	0.729705078734449	1
Merged-chr13-26792036-4	chr13	26791942	26792142	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-21877.0	NM_008232	15192.0	Mm.7411	NM_008232	ENSMUSG00000045835	Hdgfl1	4921520N01Rik|HRP-1|Hdgfrp1|Pwwp1	hepatoma derived growth factor-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-8913069-6	chr10	8913047	8913247	+	787.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-27077.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131245163-4	chr1	131245019	131245219	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001313731)	promoter-TSS (NM_001313731)	59.0	NM_001313731	54354.0	Mm.248291	NM_018750	ENSMUSG00000026430	Rassf5	1300019G20Rik|Maxp1|Nore1|Nore1A|Nore1B|Rapl	Ras association (RalGDS/AF-6) domain family member 5	protein-coding	4.0807400615322	4.31987288505193	4.7918904380895	4.00823411239839	3.77478580260839	4.62352154740461	4.32840955550622	3.58517072293946	-0.265845878980645	0.552511283088338	0.959523840754686
Merged-chr15-50972714-1	chr15	50972614	50972814	+	733.0	f0_balb.idr	Intergenic	Intergenic	-82673.0	NM_032000	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-158613389-1	chr2	158613289	158613489	+	555.0	f1_c57bl6.idr	intron (NM_009508, intron 1 of 1)	intron (NM_009508, intron 1 of 1)	2631.0	NM_009508	22348.0	Mm.143404	NM_009508	ENSMUSG00000037771	Slc32a1	R75019|VGAT|Viaat	solute carrier family 32 (GABA vesicular transporter), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-109126267-3	chr4	109126170	109126370	+	850.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355190, intron 2 of 21)	Charlie29a|DNA|hAT-Charlie	-8234.0	NM_001134791	100273.0	Mm.366315	NM_133885	ENSMUSG00000028559	Osbpl9	2600011I06Rik|AU015843|Orp-9	oxysterol binding protein-like 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120509391-4	chr8	120509382	120509582	+	992.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198671, intron 1 of 15)	intron (NM_198671, intron 1 of 15)	20616.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-155869043-2	chr4	155868941	155869141	+	817.0	f0_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028020)	promoter-TSS (NM_028020)	399.0	NM_024472	79554.0	Mm.25556	NM_024472	ENSMUSG00000029073	Cptp	Gltpd1	ceramide-1-phosphate transfer protein	protein-coding	3.03103858988825	1.97844404484002	3.28573814282365	3.98588797611229	3.0563578798455	3.02667189189216	2.67137874260572	3.03637930615499	-0.522260292009103	0.451553244656711	0.918052840497835
Merged-chr11-62470631-4	chr11	62470535	62470735	+	950.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039536, intron 1 of 6)	L1MB4|LINE|L1	12175.0	NM_001039536	327942.0	Mm.390358	NM_199026	ENSMUSG00000014245	Pigl	Gm737	phosphatidylinositol glycan anchor biosynthesis, class L	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-32820262-4	chr12	32820167	32820367	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021524)	promoter-TSS (NM_021524)	-68.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-155902209-2	chr1	155902112	155902312	+	900.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_001039184, intron 23 of 37)	intron (NM_001039184, intron 23 of 37)	71043.0	NM_001039184	74081.0	Mm.260247	NM_001039184	ENSMUSG00000033671	Cep350	4933409L06Rik|6430546F08Rik	centrosomal protein 350	protein-coding	3.13064865577805	2.10386793722293	1.58737371462558	3.45927603092019	3.15699211277711	1.35331346982465	2.83182502328489	1.26485839389543	-0.642336105680588	0.525090391791901	0.948340152465298
Merged-chr2-22744388-4	chr2	22744300	22744500	+	907.56665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	-29927.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-4137141-7	chr7	4137042	4137242	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033548)	promoter-TSS (NR_033548)	86.0	NM_172736	232798.0	Mm.22831	NM_172736	ENSMUSG00000035545	Leng8	AW049671	leukocyte receptor cluster (LRC) member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-125405141-4	chr5	125405043	125405243	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15126.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-111544128-4	chr10	111544034	111544234	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37848.0	NM_009344	21664.0	Mm.3117	NM_009344	ENSMUSG00000020205	Phlda1	DT1P1B11|TDAG51|Tdag	pleckstrin homology like domain, family A, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-33249376-3	chr4	33249268	33249468	+	800.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033225)	promoter-TSS (NM_001033225)	-581.0	NM_001033225	108767.0	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-60988308-4	chr14	60988156	60988356	+	807.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013869, intron 5 of 9)	intron (NM_013869, intron 5 of 9)	49731.0	NM_001164155	29820.0	Mm.281356	NM_013869	ENSMUSG00000060548	Tnfrsf19	AL023044|AW123854|TAJ|TAJ-ALPHA|TRADE|Troy	tumor necrosis factor receptor superfamily, member 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131980744-1	chr1	131980644	131980844	+	760.5	f0_balb.idr	intron (NM_001177628, intron 4 of 4)	intron (NM_001177628, intron 4 of 4)	10135.0	NM_145977	212980.0	Mm.200307	NM_145977	ENSMUSG00000026435	Slc45a3	2210413P12Rik|AU023994|AU043764|IPCA-6|PRST|Pcanap6	solute carrier family 45, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-27792540-2	chr5	27792442	27792642	+	677.0	f0_balb.idr|f1_balb.idr	promoter-TSS (NM_018878)	promoter-TSS (NM_018878)	-992.0	NM_018878	55982.0	Mm.277190	NM_018878	ENSMUSG00000002221	Paxip1	D5Ertd149e|PTIP	PAX interacting (with transcription-activation domain) protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-21241512-4	chr11	21241416	21241616	+	800.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290628, intron 1 of 22)	intron (NM_001290628, intron 1 of 22)	2484.0	NM_001290628	245944.0	Mm.170103	NM_139061	ENSMUSG00000020128	Vps54	Hcc8|Vps54l|mSLP8|wr	VPS54 GARP complex subunit	protein-coding	-1.50516312850466	-1.47383092096757	-1.48330603914065	-1.19291545288017	-1.3546714919122	-1.47177762333306	-1.48116108007494	-1.48969600423451	-0.709809768853011	0.840354194586821	1
Merged-chr17-36084088-2	chr17	36083988	36084188	+	738.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008199, intron 1 of 5)	CpG-6344	161.0	NM_008199	14963.0	Mm.477808	NM_008199	ENSMUSG00000073406	H2-Bl	H2-B1|H2-Bl-like	histocompatibility 2, blastocyst	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-121251966-4	chr5	121251771	121251971	+	984.28125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181421, intron 1 of 75)	intron (NM_181421, intron 1 of 75)	31652.0	NM_181421	269700.0	Mm.184589	NM_181421	ENSMUSG00000042744	Hectd4	A130010L24|AU042671|BC019639|EG545802|Gm15800|mKIAA0614	HECT domain E3 ubiquitin protein ligase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167268348-2	chr2	167268248	167268448	+	562.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27811.0	NM_008968	19223.0	Mm.2339	NM_008968	ENSMUSG00000017969	Ptgis	Cyp8|Cyp8a1|Pgis	prostaglandin I2 (prostacyclin) synthase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-104035479-4	chr9	104035400	104035600	+	916.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028721, intron 19 of 26)	intron (NM_028721, intron 19 of 26)	27621.0	NM_025692	66663.0	Mm.224935	NM_025692	ENSMUSG00000032557	Uba5	5730525G14Rik|AW240750|Ube1dc1	ubiquitin-like modifier activating enzyme 5	protein-coding	-1.14149542847138	-0.33100028091332	-1.12720875772362	-1.13728867753953	-1.14086750656251	-1.11193125150289	-1.12436624874263	-1.1356767669541	-2.98824766641611	0.369648585513947	1
Merged-chr1-16217946-1	chr1	16217846	16218046	+	557.0	f1_c57bl6.idr	Intergenic	Intergenic	112064.0	NM_133832	98711.0	Mm.274376	NM_133832	ENSMUSG00000025921	Rdh10	3110069K09Rik|4921506A21Rik|AI875664|AW549993|D1Ertd762e|m366Asp	retinol dehydrogenase 10 (all-trans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43383406-4	chr4	43383315	43383515	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037709, intron 1 of 11)	intron (NM_001037709, intron 1 of 11)	1433.0	NM_001037709	100213.0	Mm.235730	NM_199057	ENSMUSG00000035969	Rusc2	AI840675|mKIAA0375	RUN and SH3 domain containing 2	protein-coding	2.49372387312542	3.74965807414369	2.86722779688463	3.52631699101537	4.0780039637177	2.05413342434621	3.23454467286247	4.05172233299347	0.512089251567637	0.450837089651528	0.916907738284681
Merged-chr5-124112840-2	chr5	124112740	124112940	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_025671, exon 2 of 7)	exon (NM_025671, exon 2 of 7)	519.0	NM_001347478	66627.0	Mm.7050	NM_025671	ENSMUSG00000023707	Ogfod2	1300006G11Rik|5730405M13Rik|AU041636|AW552395	2-oxoglutarate and iron-dependent oxygenase domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-114907657-3	chr6	114907571	114907771	+	667.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356371, intron 2 of 5)	Lx7|LINE|L1	14150.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-142342021-3	chr7	142341916	142342116	+	977.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177265, intron 3 of 3)	ORR1E|LTR|ERVL-MaLR	30243.0	NM_177265	320802.0	Mm.154486	NM_177265	ENSMUSG00000045777	Ifitm10	6330512M04Rik|AI848576|DSPA3	interferon induced transmembrane protein 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-15925073-4	chr19	15924982	15925182	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001205339)	promoter-TSS (NM_001205339)	-23.0	NM_177420	107272.0	Mm.289936	NM_177420	ENSMUSG00000024640	Psat1	D8Ertd814e|EPIP|PSA|Psat	phosphoserine aminotransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-80358025-3	chr12	80357923	80358123	+	808.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177267, intron 7 of 8)	intron (NM_177267, intron 7 of 8)	33654.0	NR_037207	100526530.0		NR_037207	ENSMUSG00000105972	Mir1843a	Mir1843|mir-1843a|mmu-mir-1843|mmu-mir-1843a	microRNA 1843a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-101656018-4	chr13	101655919	101656119	+	970.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	HAL1|LINE|L1	36611.0	NM_001024955	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-59460793-2	chr16	59460679	59460879	+	701.5	f0_c57.idr|f1_c57bl6.idr	intron (NM_001081190, intron 8 of 8)	B3A|SINE|B2	8459.0	NR_040568	75636.0	Mm.490522	NR_040568	ENSMUSG00000099983	1700022E09Rik	-	RIKEN cDNA 1700022E09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-56802406-4	chr4	56802269	56802469	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026079)	promoter-TSS (NM_026079)	-38.0	NM_026079	230233.0	Mm.282743	NM_026079	ENSMUSG00000028431	Ikbkap	3110040G09Rik|6030413P05|C78473|Elp1|IKAP	inhibitor of kappa light polypeptide enhancer in B cells, kinase complex-associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-88122265-2	chr17	88122165	88122365	+	556.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-3247.0	NM_001190356	225058.0	Mm.312053	NM_001190356		Gm4832	EG225058	predicted gene 4832	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-78631104-3	chr14	78631011	78631211	+	916.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104044, intron 1 of 27)	B1F|SINE|Alu	-1821.0	NM_001281794	380921.0	Mm.89591	NM_001081336	ENSMUSG00000034731	Dgkh	5930402B05Rik|D130015C16|DGK	diacylglycerol kinase, eta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140815221-3	chr5	140815120	140815320	+	711.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010302, intron 1 of 3)	intron (NM_010302, intron 1 of 3)	15211.0	NM_010302	14673.0	Mm.370185	NM_010302	ENSMUSG00000000149	Gna12	AI414047|AI504261|Galpha12	guanine nucleotide binding protein, alpha 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-80014418-11	chr15	80014326	80014526	+	749.674255	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_011057, exon 1 of 7)	5' UTR (NM_011057, exon 1 of 7)	382.0	NM_011057	18591.0	Mm.144089	NM_011057	ENSMUSG00000000489	Pdgfb	PDGF-B|Sis	platelet derived growth factor, B polypeptide	protein-coding	1.22392227508483	2.40480041941156	1.1351510311177	0.878658459163884	1.82061692651641	0.920196548974998	1.78239426653797	1.45855759866116	-0.119463569552056	0.925355583213661	0.998431161219273
Merged-chr8-106210518-2	chr8	106210418	106210618	+	668.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145404)	promoter-TSS (NM_145404)	415.0	NM_001007567	66432.0	Mm.269029	NM_001007567	ENSMUSG00000033106	Slc7a6os	2010007L18Rik|2400002F02Rik	solute carrier family 7, member 6 opposite strand	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-84879405-2	chr11	84879305	84879505	+	621.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025414)	promoter-TSS (NM_025414)	790.0	NM_027388	70325.0	Mm.390414	NM_027388	ENSMUSG00000045140	Pigw	2610044A17Rik|Gwt1	phosphatidylinositol glycan anchor biosynthesis, class W	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116868322-4	chr11	116868247	116868447	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178620, intron 9 of 12)	intron (NM_178620, intron 9 of 12)	14347.0	NM_001361586	69900.0	Mm.348004	NM_178620	ENSMUSG00000020818	Mfsd11	2600014M03Rik	major facilitator superfamily domain containing 11	protein-coding	5.87944399251421	5.41476339698838	5.50107693875852	5.39671517966142	5.5527845951722	4.86629988226582	5.81646409779748	5.55119365195838	-0.0844823221458464	0.770141812111525	0.998431161219273
Merged-chr15-100405619-4	chr15	100405509	100405709	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001146161, exon 8 of 16)	exon (NM_001146161, exon 8 of 16)	17446.0	NM_001146161	18174.0	Mm.234608	NM_008732	ENSMUSG00000023030	Slc11a2	DCT1|DMT1|Nramp2|mk|van	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2	protein-coding	4.68415213058646	4.3741631188704	4.57117657753772	5.51703738447366	4.91344596499302	4.11319550628215	5.1023488565875	4.56775768244402	-0.170089136937287	0.666298679229962	0.992515300319318
Merged-chr16-24879326-4	chr16	24879232	24879432	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 9 of 12)	intron (NM_178665, intron 9 of 12)	157477.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-60284799-2	chr2	60284693	60284893	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_001290660)	promoter-TSS (NM_001290660)	-309.0	NM_001290660	66205.0	Mm.227281	NM_025422	ENSMUSG00000060703	Cd302	1110055L24Rik|AI159627	CD302 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-40221147-4	chr12	40221063	40221263	+	738.133301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013562, intron 1 of 11)	intron (NM_013562, intron 1 of 11)	1648.0	NR_035459	100316693.0		NR_035459	ENSMUSG00000089371	Mir1938	mir-1938|mmu-mir-1938	microRNA 1938	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43906696-2	chr4	43906596	43906796	+	869.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016678, intron 6 of 20)	intron (NM_016678, intron 6 of 20)	31166.0	NM_016678	53614.0	Mm.331573	NM_016678	ENSMUSG00000028476	Reck	St15|mRECK	reversion-inducing-cysteine-rich protein with kazal motifs	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-61686528-1	chr8	61686428	61686628	+	580.0	f0_balb.idr	intron (NM_001293772, intron 9 of 21)	intron (NM_001293772, intron 9 of 21)	73570.0	NM_001293773	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-82370839-4	chr8	82370728	82370928	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008357, intron 2 of 7)	intron (NM_008357, intron 2 of 7)	31758.0	NM_001254747	16168.0	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	4.25440266284705	3.78837204798967	5.06903990757016	4.91213497940115	4.72476662699534	4.08590074251586	4.92444962373155	4.86422420677471	0.111529130957732	0.785259237671186	0.998431161219273
Merged-chr10-52256040-3	chr10	52255950	52256150	+	891.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347444, intron 1 of 9)	intron (NM_001347444, intron 1 of 9)	22431.0	NM_025705	66686.0	Mm.62982	NM_025705	ENSMUSG00000019891	Dcbld1	4631413K11Rik	discoidin, CUB and LCCL domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-3386895-2	chr18	3386795	3386995	+	721.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_029402, intron 1 of 20)	B1_Mus1|SINE|Alu	3670.0	NM_029402	71745.0	Mm.291707	NM_029402	ENSMUSG00000024231	Cul2	1300003D18Rik|4932411N15Rik|AI327301|mKIAA4106	cullin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-157560830-3	chr1	157560724	157560924	+	899.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_027641, exon 20 of 27)	non-coding (NR_027641, exon 20 of 27)	34654.0	NM_001159986	89867.0	Mm.87114	NM_033354	ENSMUSG00000026589	Sec16b	Lztr2|Rgpr|Rgpr-p117	SEC16 homolog B (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69041090-4	chr11	69040990	69041190	+	993.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4547.0	NM_011496	20877.0	Mm.3488	NM_011496	ENSMUSG00000020897	Aurkb	AIM-1|AIRK2|AL022959|Aik2|Aim1|Ark2|AurB|IPL1|STK-1|Stk12|Stk5	aurora kinase B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53631528-2	chr4	53631454	53631654	+	631.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001195284)	promoter-TSS (NM_001195284)	83.0	NM_001195284	319636.0	Mm.103464	NM_176966	ENSMUSG00000054752	Fsd1l	A230072O16Rik|Ccdc10|Csdufd1|Fsd1nl	fibronectin type III and SPRY domain containing 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-94594744-2	chr16	94594644	94594844	+	629.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113389, intron 1 of 11)	Lx7|LINE|L1	-16675.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28807058-4	chr7	28806944	28807144	+	957.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3846.0	NM_177301	15388.0	Mm.9043	NM_177301	ENSMUSG00000015165	Hnrnpl	C79783|D830027H13Rik|Hnrpl	heterogeneous nuclear ribonucleoprotein L	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152901873-2	chr1	152901773	152901973	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001160257, intron 1 of 23)	intron (NM_001160257, intron 1 of 23)	772.0	NM_001359257	226517.0	Mm.270775	NM_001005507	ENSMUSG00000042772	Smg7	9430023P16Rik|mKIAA0250	Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-97007066-4	chr5	97006978	97007178	+	871.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080708, intron 1 of 15)	intron (NM_080708, intron 1 of 15)	9389.0	NM_080708	140780.0	Mm.281490	NM_080708	ENSMUSG00000034663	Bmp2k	4933417M22Rik|AA673486|AV128808|BIKE	BMP2 inducible kinase	protein-coding	-1.31349849087795	-1.28274354783242	-1.29349452597086	-1.3023256995151	-1.3130151546297	-1.28041376602105	-0.694015972326031	-1.30074492367298	2.57396649482007	0.456321314346772	1
Merged-chr19-5613284-4	chr19	5613266	5613466	+	826.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3272.0	NM_178637	81601.0	Mm.228930	NM_178637	ENSMUSG00000024926	Kat5	AI839539|CPLA2|Htatip|Htatip1|PLIP|Tip55|Tip60	K(lysine) acetyltransferase 5	protein-coding	1.66818424966373	1.62340941638385	1.69722001359288	1.23530376871964	1.58181616128321	1.76929645358249	1.26694870976567	1.65864383599006	0.0453512460705697	0.967113228979232	0.998431161219273
Merged-chr11-106510310-4	chr11	106510218	106510418	+	907.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198292, intron 10 of 11)	B1_Mur4|SINE|Alu	9327.0	NR_030703	100216537.0		NR_030703	ENSMUSG00000065126	Snord104	-	small nucleolar RNA, C/D box 104	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-97198395-4	chr13	97198294	97198494	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010422)	promoter-TSS (NM_010422)	-37.0	NM_010422	15212.0	Mm.27816	NM_010422	ENSMUSG00000021665	Hexb	-	hexosaminidase B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-98334155-4	chr7	98334070	98334270	+	975.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12962.0	NM_001360615	66190.0	Mm.334041	NM_025408	ENSMUSG00000030760	Acer3	1110057L18Rik|5430429L08Rik|AV015045|Phca|aPHC	alkaline ceramidase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-17604546-4	chr15	17604382	17604582	+	873.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	765145.0	NR_045711	70886.0	Mm.399021	NR_045711	ENSMUSG00000098150	4921515E04Rik	-	RIKEN cDNA 4921515E04 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-31437150-3	chr17	31437033	31437233	+	929.755554	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008804, intron 4 of 18)	intron (NM_008804, intron 4 of 18)	50899.0	NM_001163748	18585.0	Mm.10812	NM_008804	ENSMUSG00000041119	Pde9a	PDE9A1	phosphodiesterase 9A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34840170-2	chr17	34840070	34840270	+	628.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001163770)	TTS (NM_001163770)	1701.0	NR_105937	102466777.0		NR_105937	ENSMUSG00000098458	Mir6971	Gm27307|mmu-mir-6971	microRNA 6971	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65128291-1	chr9	65128191	65128391	+	542.0	f1_c57bl6.idr	intron (NM_001290315, intron 10 of 19)	intron (NM_001290315, intron 10 of 19)	-12863.0	NM_008988	19289.0	Mm.41529	NM_008988	ENSMUSG00000032394	Igdcc3	2810401C09Rik|AI851425|Punc|WI-14920	immunoglobulin superfamily, DCC subclass, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-88255886-4	chr17	88255752	88255952	+	833.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	130340.0	NM_001190356	225058.0	Mm.312053	NM_001190356		Gm4832	EG225058	predicted gene 4832	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-115898148-3	chr4	115898071	115898271	+	644.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001357060, exon 2 of 2)	exon (NM_001357060, exon 2 of 2)	7505.0	NM_001357060	76237.0	Mm.101606	NM_001357060	ENSMUSG00000034185	6430628N08Rik	-	RIKEN cDNA 6430628N08 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-97817178-3	chr15	97817082	97817282	+	697.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001204280, intron 1 of 21)	intron (NM_001204280, intron 1 of 21)	-2319.0	NM_001204281	56233.0	Mm.384027	NM_019572	ENSMUSG00000022475	Hdac7	5830434K02Rik|HD7|HD7a|Hdac7a|mFLJ00062	histone deacetylase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-21474875-4	chr17	21474779	21474979	+	869.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MMVL30-int|LTR|ERV1	-14109.0	NM_013843	24132.0	Mm.42140	NM_013843	ENSMUSG00000057409	Zfp53	D030067O06Rik|KRAZ1|Zfp-53|Zfp118|zfas8	zinc finger protein 53	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-155074160-2	chr1	155074060	155074260	+	579.833313	f1_balb.idr|f1_c57bl6.idr	intron (NR_151545, intron 3 of 6)	intron (NR_151545, intron 3 of 6)	9104.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-79485752-4	chr14	79485657	79485857	+	963.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007920, intron 1 of 8)	L1M3|LINE|L1	-4489.0	NM_018765	22380.0	Mm.476813	NM_018765	ENSMUSG00000022023	Wbp4	AW545037|BB101031|FBP21	WW domain binding protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-104132553-6	chr13	104132316	104132516	+	907.888916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144838, intron 8 of 10)	AT_rich|Low_complexity|Low_complexity	22675.0	NM_144838	218544.0	Mm.44416	NM_144838	ENSMUSG00000042743	Sgtb	C630001O05Rik	small glutamine-rich tetratricopeptide repeat (TPR)-containing, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-110486233-4	chr12	110486123	110486323	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081457, intron 1 of 12)	intron (NM_001081457, intron 1 of 12)	484.0	NM_012023	26931.0	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-98565636-2	chr15	98565536	98565736	+	627.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_009833, intron 1 of 8)	B3|SINE|B2	-1688.0	NR_028442	100048895.0	Mm.471074	NR_028442		9330020H09Rik	-	RIKEN cDNA 9330020H09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-23305418-4	chr11	23305310	23305510	+	981.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	-1485.0	NM_001190401	17847.0	Mm.119155	NM_001190401	ENSMUSG00000056342	Usp34	A530081C03Rik|Murr2	ubiquitin specific peptidase 34	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-145814753-2	chr2	145814653	145814853	+	671.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028724, intron 2 of 12)	B1_Mur1|SINE|Alu	28637.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-18810198-4	chr13	18810100	18810300	+	907.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172120, intron 7 of 28)	intron (NM_172120, intron 7 of 28)	92908.0	NM_172120	218035.0	Mm.27389	NM_172120	ENSMUSG00000041236	Vps41	AI317346|Vam2|mVam2	VPS41 HOPS complex subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191575055-1	chr1	191574955	191575155	+	673.0	f0_balb.idr	promoter-TSS (NM_001306203)	promoter-TSS (NM_001306203)	489.0	NM_029766	76843.0	Mm.189102	NM_029766	ENSMUSG00000037474	Dtl	2810047L02Rik|5730564G15Rik|L2dtl|Ramp	denticleless E3 ubiquitin protein ligase	protein-coding	0.0286174928246621	-0.218377765697717	-0.222816504438828	-0.226235582701775	0.239967287516646	0.394129459566954	-0.221838208867029	-0.225638621613201	2.1526850104632	0.377234435031197	1
Merged-chr1-194991136-2	chr1	194991036	194991236	+	583.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14177.0	NR_033564	320400.0	Mm.417608	NR_033564	ENSMUSG00000097325	Gm16897	C030002c11rik	predicted gene, 16897	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-63398678-2	chr4	63398578	63398778	+	689.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001305432)	promoter-TSS (NM_001305432)	-438.0	NM_001305432	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88140120-3	chr3	88140057	88140257	+	865.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2215.0	NM_001310593	17261.0	Mm.28184	NM_133665	ENSMUSG00000001419	Mef2d	C80750	myocyte enhancer factor 2D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-39559615-3	chr18	39559494	39559694	+	951.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72349.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27911468-4	chr17	27911381	27911581	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181413, intron 1 of 24)	MTC|LTR|ERVL-MaLR	2175.0	NM_181413	224650.0	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	0.507508860930643	0.582594566464967	1.16661047660093	0.36565191969409	0.957164584961155	0.38152680786306	0.858650033510347	0.36672934445026	-0.149222468098673	0.932152113261511	1
Merged-chr19-57359832-2	chr19	57359732	57359932	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_040316, intron 1 of 2)	intron (NR_040316, intron 1 of 2)	1067.0	NR_040316	320879.0	Mm.375089	NR_040316	ENSMUSG00000097785	B230217O12Rik	-	RIKEN cDNA B230217O12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-4430705-2	chr12	4430605	4430805	+	653.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010881, intron 1 of 22)	MLT1J|LTR|ERVL-MaLR	46477.0	NM_010881	17977.0	Mm.301039	NM_010881	ENSMUSG00000020647	Ncoa1	KAT13A|NCoA-1|NRC-1|SRC-1|SRC-a|SRC1|bHLHe74|mNRC-1	nuclear receptor coactivator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6126409-2	chr19	6126309	6126509	+	863.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026912, intron 1 of 7)	B3|SINE|B2	1806.0	NM_026912	69024.0	Mm.329629	NM_026912	ENSMUSG00000024787	Snx15	1500032B08Rik|E130013C21Rik	sorting nexin 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-38931965-2	chr19	38931865	38932065	+	593.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008234, intron 2 of 21)	intron (NM_008234, intron 2 of 21)	975.0	NM_008234	15201.0	Mm.57223	NM_008234	ENSMUSG00000025001	Hells	AI323785|E130115I21Rik|LSH|Lysh|PASG|YFK8	helicase, lymphoid specific	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-88838359-6	chr18	88838233	88838433	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus1|LINE|L1	55874.0	NM_018821	54607.0	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-51970503-2	chr12	51970403	51970603	+	733.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177171, intron 1 of 35)	intron (NM_177171, intron 1 of 35)	818.0	NM_177171	320487.0	Mm.131941	NM_177171	ENSMUSG00000035181	Heatr5a	C230081H03Rik|D930036F22Rik|mKIAA1316	HEAT repeat containing 5A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-103992849-4	chr11	103992758	103992958	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25987.0	NM_007477	11841.0	Mm.5061	NM_007477	ENSMUSG00000062421	Arf2	-	ADP-ribosylation factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-79881274-1	chr11	79881174	79881374	+	665.0	f1_balb.idr	Intergenic	Intergenic	81113.0	NM_144826	216987.0	Mm.274961	NM_144826	ENSMUSG00000035575	Utp6	4732497O03Rik|HCA66	UTP6 small subunit processome component	protein-coding	0.0526169900053067	-0.0645921887581483	-0.0688691192246542	0.0780539782227691	0.172050852645139	0.399486434421336	-0.0679279853469526	0.324754775262655	2.09511419520904	0.317422069861325	1
Merged-chr7-118490758-4	chr7	118490651	118490851	+	884.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001033380, exon 1 of 1)	exon (NM_001033380, exon 1 of 1)	1224.0	NM_001033380	319622.0	Mm.323386	NM_001033380	ENSMUSG00000095115	Itpripl2	C130081G24|E030018N11Rik	inositol 1,4,5-triphosphate receptor interacting protein-like 2	protein-coding	4.57561934582722	3.18412308353596	3.51145933855166	3.66064300087739	4.13035723979428	3.99865678411279	3.94060974925564	4.17588764336733	0.280132560665046	0.572040385984994	0.963681627499011
Merged-chr13-35783784-4	chr13	35783678	35783878	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001123386, intron 1 of 6)	intron (NM_001123386, intron 1 of 6)	42376.0	NM_001123386	12593.0	Mm.29002	NM_009881	ENSMUSG00000059288	Cdyl	AI325931	chromodomain protein, Y chromosome-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-4556354-2	chr6	4556254	4556454	+	540.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44712.0	NM_145398	213819.0	Mm.270703	NM_145398	ENSMUSG00000015189	Casd1	Cas1|Cast1|SOAT	CAS1 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-108395811-1	chr6	108395711	108395911	+	768.0	f1_balb.idr	intron (NM_010585, intron 29 of 61)	intron (NM_010585, intron 29 of 61)	-93932.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	-0.898599163452337	-1.01791449379255	-1.02904660753465	-0.621479641708792	-1.03569202938475	-1.01550211830592	-0.855566550923809	-1.03271355005094	-1.58278424089533	0.595510843641714	1
Merged-chr1-88228514-6	chr1	88228515	88228715	+	902.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001281466, intron 3 of 41)	intron (NM_001281466, intron 3 of 41)	1595.0	NM_001281466	100040766.0	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	Heatr7b1	maestro heat-like repeat family member 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-11421746-2	chr16	11421646	11421846	+	863.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028964, intron 11 of 20)	intron (NM_028964, intron 11 of 20)	16098.0	NM_001290148	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-89793330-2	chr9	89793230	89793430	+	800.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8998.0	NR_029570	387179.0		NR_029570	ENSMUSG00000065596	Mir184	Mirn184|mir-184|mmu-mir-184	microRNA 184	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-95665225-4	chr1	95665176	95665376	+	997.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159745, intron 1 of 3)	intron (NM_001159745, intron 1 of 3)	2318.0	NM_009183	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-137019597-2	chr2	137019497	137019697	+	609.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038641, intron 4 of 7)	RSINE1|SINE|B4	96923.0	NM_013822	16449.0	Mm.22398	NM_013822	ENSMUSG00000027276	Jag1	ABE2|Gsfabe2|Htu|Ozz|Ser-1	jagged 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-114316595-4	chr7	114316506	114316706	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_029437, intron 3 of 3)	intron (NR_029437, intron 3 of 3)	-40490.0	NM_011965	26440.0	Mm.121265	NM_011965	ENSMUSG00000030751	Psma1	C2|HC2|Pros-30|alpha-type	proteasome (prosome, macropain) subunit, alpha type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-174312321-3	chr2	174312221	174312421	+	850.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310085, intron 2 of 12)	intron (NM_001310085, intron 2 of 12)	14462.0	NM_001310085	14683.0	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-36711002-3	chr16	36710902	36711102	+	850.1222529999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285788, intron 3 of 7)	B3A|SINE|B2	17024.0	NM_001285791	106347.0	Mm.17807	NM_134109	ENSMUSG00000022900	Ildr1	AU041483|AU044638	immunoglobulin-like domain containing receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-50752791-2	chr16	50752691	50752891	+	785.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20018.0	NR_028300	68190.0	Mm.139089	NR_028300		Dubr	5330426P16Rik|Dum	Dppa2 upstream binding RNA	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-110100443-3	chr5	110100296	110100496	+	885.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001281812)	promoter-TSS (NM_001281812)	-163.0	NM_001281812	403178.0	Mm.297057	NM_207279	ENSMUSG00000064247	Plcxd1	A330045H12Rik|Gm576	phosphatidylinositol-specific phospholipase C, X domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-100685140-2	chr15	100685040	100685240	+	748.125	f1_balb.idr|f1_c57bl6.idr	exon (NM_033612, exon 3 of 8)	exon (NM_033612, exon 3 of 8)	2780.0	NM_033612	109901.0	Mm.2131	NM_033612	ENSMUSG00000023031	Cela1	1810009A17Rik|1810062B19Rik|Ela-1|Ela1|PC-TsF	chymotrypsin-like elastase family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-86886300-4	chr4	86886183	86886383	+	943.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290543, intron 2 of 5)	intron (NM_001290543, intron 2 of 5)	11869.0	NM_139306	230379.0	Mm.45019	NM_139306	ENSMUSG00000038007	Acer2	2410116I05Rik|Asah3l|CRG-L1|maCER2	alkaline ceramidase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76661167-4	chr15	76660950	76661150	+	826.320801	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001276322)	promoter-TSS (NM_001276322)	469.0	NM_001358911	16581.0	Mm.378950	NM_010630	ENSMUSG00000004187	Kifc2	-	kinesin family member C2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-83159124-4	chr8	83159020	83159220	+	856.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-6232.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	3.80429835129119	1.86758135201473	2.39633548344214	2.32451593377543	3.28771880776644	2.6578747750349	2.41625960401549	3.3875694015508	0.254262644703542	0.747533657212117	0.998431161219273
Merged-chr6-83651281-3	chr6	83651184	83651384	+	873.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016751, intron 4 of 6)	L1_Mus1|LINE|L1	4832.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	0.972510677201442	2.34071301744725	1.02803571659688	2.09004246436635	1.78579103343128	2.35987362799257	1.03371487772859	1.88589865335598	0.221171022530604	0.859313584576668	0.998431161219273
Merged-chr1-88230045-2	chr1	88229945	88230145	+	912.7999880000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001281466, intron 3 of 41)	intron (NM_001281466, intron 3 of 41)	3025.0	NM_001281466	100040766.0	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	Heatr7b1	maestro heat-like repeat family member 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52647200-2	chr13	52647100	52647300	+	702.75	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001198977, exon 14 of 14)	3' UTR (NM_001198977, exon 14 of 14)	50318.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-47054363-2	chr7	47054263	47054463	+	573.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_026436, exon 3 of 3)	3' UTR (NM_026436, exon 3 of 3)	3723.0	NM_026436	67893.0	Mm.27338	NM_026436	ENSMUSG00000010307	Tmem86a	1810054O13Rik|AI414959|AW742698	transmembrane protein 86A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-74280199-2	chr4	74280099	74280299	+	911.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356561, intron 2 of 20)	MTE2b|LTR|ERVL-MaLR	28320.0	NM_001356561	76804.0	Mm.209059	NM_144787	ENSMUSG00000028397	Kdm4c	2410141F18Rik|AA517467|Gasc1|Jmjd2c	lysine (K)-specific demethylase 4C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-45552382-4	chr14	45552270	45552470	+	997.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045809, intron 3 of 6)	intron (NR_045809, intron 3 of 6)	8660.0	NR_045809	67651.0	Mm.55930	NR_045809	ENSMUSG00000115324	4930527F14Rik	-	RIKEN cDNA 4930527F14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114226775-4	chr11	114226676	114226876	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28518.0	NR_045930	73536.0	Mm.54275	NR_045930	ENSMUSG00000078600	1700092K14Rik	-	RIKEN cDNA 1700092K14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-107892814-2	chr4	107892714	107892914	+	848.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028754, intron 4 of 6)	B2_Mm2|SINE|B2	2915.0	NM_028754	74098.0	Mm.274853	NM_028754	ENSMUSG00000028608	0610037L13Rik	1110008H16Rik	RIKEN cDNA 0610037L13 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19558759-2	chr7	19558659	19558859	+	563.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_199149, intron 1 of 12)	intron (NM_199149, intron 1 of 12)	3639.0	NM_199149	232947.0	Mm.219662	NM_199149	ENSMUSG00000051403	Ppp1r37	Gm158|Lrrc68	protein phosphatase 1, regulatory subunit 37	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-85518582-4	chr11	85518458	85518658	+	794.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138681, intron 16 of 25)	intron (NM_138681, intron 16 of 25)	165394.0	NM_001166643	192197.0	Mm.209989	NM_138681	ENSMUSG00000059439	Bcas3	1500019F07Rik|2610028P08Rik|AU021018|BC028339|K20D4|rudhira	breast carcinoma amplified sequence 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3640076-3	chr4	3639982	3640182	+	861.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16424.0	NR_040643	70143.0	Mm.417835	NR_040643	ENSMUSG00000085394	2210414B05Rik	-	RIKEN cDNA 2210414B05 gene	ncRNA	2.20546198541337	3.52066828491613	2.65584027058006	2.69117690478827	2.57529359875097	2.4919989538206	2.78995383939041	2.80548043500796	-0.361401677079276	0.619711955076702	0.978663311075481
Merged-chr4-99152355-4	chr4	99152253	99152453	+	990.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31438.0	NM_026082	67299.0	Mm.260623	NM_026082	ENSMUSG00000028556	Dock7	3110056M06Rik|Gm430	dedicator of cytokinesis 7	protein-coding	2.49235474314351	2.24355205578832	2.5915673264214	3.56508453674894	2.77943191445369	2.57241342494805	2.34555573826615	2.11836994495345	-0.718514631549878	0.354000557444214	0.853132398390271
Merged-chr7-28391465-2	chr7	28391365	28391565	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026042, intron 1 of 3)	B1_Mus2|SINE|Alu	1225.0	NM_026042	67224.0	Mm.41647	NM_026042	ENSMUSG00000003444	Med29	2810405O22Rik|AU020902|Ixl	mediator complex subunit 29	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-116139356-2	chr6	116139256	116139456	+	588.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_177412, intron 1 of 5)	B2_Mm2|SINE|B2	54018.0	NM_177412	330401.0	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-9853268-3	chr3	9853164	9853364	+	800.472229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19585.0	NM_001195031	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	3.50163329092819	2.36456959724717	2.73456312206472	3.04093763533598	2.43278904502895	1.28188709308212	1.23836173705541	1.19899762835786	-2.81508042527633	0.00455577674064378	0.0623500486702404
Merged-chr6-142748464-4	chr6	142748360	142748560	+	964.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TGGGGG)n|Simple_repeat|Simple_repeat	-8226.0	NM_009908	12764.0	Mm.3820	NM_009908	ENSMUSG00000030282	Cmas	AW208911|CMPNeu5Ac|D6Bwg0250e	cytidine monophospho-N-acetylneuraminic acid synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65890246-4	chr9	65890167	65890367	+	987.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026515)	promoter-TSS (NM_026515)	-56.0	NM_026515	68026.0	Mm.351273	NM_026515	ENSMUSG00000040204	Pclaf	2810417H13Rik|AA409629|Ns5apt9|Ns5atp9|PAF15|Paf|mKIAA0101|p15(PAF)	PCNA clamp associated factor	protein-coding	2.77461961083464	4.07570611593265	3.16174473025766	4.07103389905956	3.7369288738638	4.28810070691633	4.03782464872455	4.14278164983102	0.608090923343753	0.240372517701411	0.736569477638593
Merged-chr12-8349197-1	chr12	8349097	8349297	+	611.0	f1_c57bl6.idr	Intergenic	L1ME1|LINE|L1	35764.0	NM_021429	58240.0	Mm.309954	NM_021429	ENSMUSG00000020605	Hs1bp3	-	HCLS1 binding protein 3	protein-coding	-0.769447330498568	-0.758914258078391	-0.424544756161183	-0.765025305517368	-0.76878933793815	-0.115356986226019	-0.761602225679867	-0.764560134479015	1.17786394964713	0.690809539413258	1
Merged-chr8-120711373-4	chr8	120711254	120711454	+	919.275024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC|LINE|L1	-25004.0	NM_008320	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-75190056-4	chr1	75189981	75190181	+	994.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003917, intron 4 of 15)	intron (NM_001003917, intron 4 of 15)	1929.0	NM_001003917	245860.0	Mm.238266	NM_001003917	ENSMUSG00000033124	Atg9a	AU019532|Apg9l1|Atg9|Atg9l1	autophagy related 9A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-78347375-2	chr11	78347275	78347475	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001313985, intron 2 of 4)	intron (NM_001313985, intron 2 of 4)	665.0	NM_001313987	22248.0	Mm.284811	NM_011676	ENSMUSG00000002058	Unc119	D11Bhm52|HRG4|MRG4|Rg4|Rtg4|Unc119h	unc-119 lipid binding chaperone	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-139131678-4	chr7	139131538	139131738	+	994.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021302, intron 2 of 11)	intron (NM_021302, intron 2 of 11)	45637.0	NM_011993	26757.0	Mm.250414	NM_011993	ENSMUSG00000025478	Dpysl4	AI173505|CRMP-3|Crmp3|DPY4|Drp-4|Ulip4	dihydropyrimidinase-like 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-49242423-4	chr13	49242326	49242526	+	900.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028340, intron 1 of 4)	intron (NM_028340, intron 1 of 4)	5868.0	NM_001360772	66329.0	Mm.34308	NM_025491	ENSMUSG00000021384	Susd3	1700017I11Rik|2810440J20Rik	sushi domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-121476425-4	chr10	121476330	121476530	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138956)	promoter-TSS (NM_138956)	-180.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	5.92686551215786	5.75588390029616	6.47106328355154	6.01888850382769	6.13617339656084	6.34193153945909	6.44869766738898	5.90714199115073	0.164412890966709	0.491769429401409	0.934778891402914
Merged-chr15-76710589-4	chr15	76710509	76710709	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145471)	promoter-TSS (NM_145471)	-32.0	NM_145471	223664.0	Mm.277582	NM_145471	ENSMUSG00000033728	Lrrc14	E130306I01Rik|mKIAA0014	leucine rich repeat containing 14	protein-coding	5.78469397092137	5.74058065406058	4.8861159633675	5.6911480921808	6.10671497602238	5.72011280512083	5.71932232599834	5.82377608084905	0.317311797716917	0.246401572858066	0.74563204527445
Merged-chr5-123664905-4	chr5	123664820	123665020	+	802.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359224, intron 1 of 18)	intron (NM_001359224, intron 1 of 18)	19441.0	NM_019765	56430.0	Mm.241109	NM_019765	ENSMUSG00000049550	Clip1	1110007I12Rik|4631429H07Rik|AV017631|C81039|CLIP-170|CLIP170|CYLN1|Clip50|Rsn|mKIAA4046|restin	CAP-GLY domain containing linker protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-88225875-2	chr1	88225775	88225975	+	979.900024	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1145.0	NM_001281466	100040766.0	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	Heatr7b1	maestro heat-like repeat family member 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139785838-2	chr5	139785738	139785938	+	750.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR17B_Mm|LTR|ERVK	-5698.0	NM_010757	17135.0	Mm.157313	NM_010757	ENSMUSG00000018143	Mafk	AW061068|NF-E2|Nfe2u	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein K (avian)	protein-coding	2.17511372620771	1.40944868884764	2.81899430841227	3.35131817425146	2.19460777423202	1.41902073542613	2.84185045095354	3.06699382426654	-0.20826348514043	0.826123865099983	0.998431161219273
Merged-chr18-38997264-4	chr18	38997135	38997335	+	968.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361073, intron 1 of 21)	intron (NM_001361073, intron 1 of 21)	4090.0	NM_175164	71302.0	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106429841-4	chr11	106429758	106429958	+	983.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023913, intron 4 of 21)	intron (NM_023913, intron 4 of 21)	-47077.0	NM_010494	15896.0	Mm.394	NM_010494	ENSMUSG00000001029	Icam2	CD102|Icam-2|Ly-60	intercellular adhesion molecule 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-86068485-4	chr5	86068427	86068627	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2944.0	NM_007683	12617.0	Mm.4649	NM_007683	ENSMUSG00000029253	Cenpc1	CENP-C|Cenpc	centromere protein C1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-44212058-4	chr5	44211980	44212180	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173764, intron 2 of 13)	ORR1D1|LTR|ERVL-MaLR	14526.0	NM_173764	231225.0	Mm.30688	NM_173764	ENSMUSG00000046985	Tapt1	4932414K18Rik	transmembrane anterior posterior transformation 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-78917965-4	chr17	78917860	78918060	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177403, intron 1 of 4)	intron (NM_001177403, intron 1 of 4)	1461.0	NM_001177402	68554.0	Mm.391820	NM_001177402	ENSMUSG00000062691	Cebpzos	1110001A16Rik	CCAAT/enhancer binding protein (C/EBP), zeta, opposite strand	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-93195870-4	chr5	93195755	93195955	+	976.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017367, intron 2 of 6)	intron (NM_017367, intron 2 of 6)	10640.0	NM_017367	12453.0	Mm.250419	NM_017367	ENSMUSG00000063015	Ccni	-	cyclin I	protein-coding	1.19646898595583	1.87658223605321	2.34079669385872	1.01850966935682	1.53725792531453	1.06868829235747	2.07121622121266	2.43405955393408	0.411419573771292	0.729737680283244	0.998431161219273
Merged-chr2-143110387-2	chr2	143110287	143110487	+	734.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13A|LTR|ERVK	31994.0	NM_020595	57329.0	Mm.157751	NM_020595	ENSMUSG00000027416	Otor	CDRAP|Fdp|MIA|MIAL	otoraplin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-40783301-6	chr9	40783230	40783430	+	943.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_133733, exon 7 of 7)	3' UTR (NM_133733, exon 7 of 7)	-17943.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	1.89362638115159	1.95923955438098	0.96749125060248	1.48173032392305	0.932748781920916	1.86267703689752	1.53799414438229	1.34062508494581	-0.567035309515089	0.648844095240717	0.985309421980721
Merged-chr10-128499505-2	chr10	128499418	128499618	+	816.125	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_172259)	promoter-TSS (NM_172259)	271.0	NR_131151	654440.0	Mm.441262	NR_131150	ENSMUSG00000097353	A430046D13Rik	-	Riken cDNA A430046D13 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70213235-4	chr14	70213129	70213329	+	957.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5558.0	NM_011366	20410.0	Mm.5068	NM_011366	ENSMUSG00000022091	Sorbs3	SCAM-1|SH3P3|Sh3d4|vinexin-g	sorbin and SH3 domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-7349708-1	chr9	7349608	7349808	+	569.0	f0_balb.idr	intron (NM_001320077, intron 3 of 10)	intron (NM_001320077, intron 3 of 10)	2334.0	NM_008605	17381.0	Mm.2055	NM_008605	ENSMUSG00000049723	Mmp12	AV378681|MME|Mmel	matrix metallopeptidase 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-64327156-4	chr7	64327059	64327259	+	895.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172742, intron 13 of 15)	intron (NM_172742, intron 13 of 15)	39489.0	NM_172742	233315.0	Mm.214959	NM_172742	ENSMUSG00000030522	Mtmr10	BB128963|C79734	myotubularin related protein 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-108131954-4	chr5	108131859	108132059	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028481)	promoter-TSS (NM_028481)	661.0	NM_001347383	73130.0	Mm.363960	NM_028876	ENSMUSG00000063406	Tmed5	3110020O18Rik|4432412D15Rik|p24gamma2	transmembrane p24 trafficking protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101274611-2	chr15	101274511	101274711	+	868.916626	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010444, exon 7 of 7)	3' UTR (NM_010444, exon 7 of 7)	7765.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-6048083-3	chr2	6047981	6048181	+	867.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081132, intron 19 of 21)	intron (NM_001081132, intron 19 of 21)	82104.0	NM_144883	227545.0	Mm.133542	NM_144883	ENSMUSG00000045319	Proser2	5430407P10Rik|AU067770	proline and serine rich 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-86079462-1	chr5	86079362	86079562	+	544.0	f0_balb.idr	intron (NM_001310639, intron 2 of 7)	intron (NM_001310639, intron 2 of 7)	7716.0	NM_001310639	56792.0	Mm.131237	NM_019992	ENSMUSG00000029254	Stap1	AI586015|Brdg1|STAP-1	signal transducing adaptor family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-109932650-7	chr9	109932527	109932727	+	825.080933	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205332, intron 1 of 17)	intron (NM_001205332, intron 1 of 17)	853.0	NM_008633	17758.0	Mm.217318	NM_008633	ENSMUSG00000032479	Map4	AA407148|MAP-4|Mtap-4|Mtap4	microtubule-associated protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-60889748-4	chr19	60889661	60889861	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018869)	promoter-TSS (NM_018869)	12.0	NM_018869	14773.0	Mm.279400	NM_018869	ENSMUSG00000003228	Grk5	Gprk5	G protein-coupled receptor kinase 5	protein-coding	4.13793189575765	3.89944024001895	3.58701558018137	4.01655008012854	5.15432780899744	4.16230727273303	4.28230093597356	4.59058093970309	0.901201013634833	0.0364754950795985	0.271036120952739
Merged-chr4-139228079-4	chr4	139227966	139228166	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	33955.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	4.41829188519991	2.81058690571687	4.80249423963776	5.12381753211022	4.12397386316793	4.60399453939178	5.22380731169423	5.05626653558765	0.352957772238986	0.45867307996238	0.919607527898796
Merged-chr7-80823051-2	chr7	80822951	80823151	+	579.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-19720.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-155705562-4	chr4	155705463	155705663	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026899, intron 1 of 4)	CpG	748.0	NM_026899	68991.0	Mm.294770	NM_026899	ENSMUSG00000029038	Ssu72	1190002E22Rik|1500011L16Rik|2610101M12Rik	Ssu72 RNA polymerase II CTD phosphatase homolog (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52825268-2	chr13	52825168	52825368	+	791.625	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68063.0	NR_027893	105404.0	Mm.184173	NR_027893		BB123696	-	expressed sequence BB123696	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88158718-2	chr3	88158618	88158818	+	791.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310593, intron 4 of 10)	intron (NM_001310593, intron 4 of 10)	16346.0	NM_133665	17261.0	Mm.28184	NM_133665	ENSMUSG00000001419	Mef2d	C80750	myocyte enhancer factor 2D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-102832519-4	chr14	102832416	102832616	+	939.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	150116.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-7122569-2	chr10	7122469	7122669	+	599.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172546, intron 12 of 12)	ORR1E|LTR|ERVL-MaLR	89668.0	NM_172546	215748.0	Mm.37984	NM_172546	ENSMUSG00000015202	Cnksr3	6820402C05|BC024086|Magi1	Cnksr family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-140947172-4	chr7	140947062	140947262	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_153832, exon 12 of 12)	non-coding (NR_153832, exon 12 of 12)	3077.0	NM_053088	73835.0	Mm.389989	NM_053088	ENSMUSG00000025489	Ifitm5	1110003J06Rik|AW213665|Bril|DSPA1|Hrmp1|Hrtm1	interferon induced transmembrane protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-36531302-4	chr16	36531193	36531393	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013803, intron 1 of 6)	intron (NM_013803, intron 1 of 6)	30841.0	NM_013803	12374.0	Mm.103619	NM_013803	ENSMUSG00000051980	Casr	CaR|Gprc2a	calcium-sensing receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-9737853-4	chr4	9737755	9737955	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-32730.0	NR_030693	320152.0	Mm.159946	NR_030693		4930412C18Rik	5730591J02Rik	RIKEN cDNA 4930412C18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-12119937-3	chr17	12119834	12120034	+	704.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026644, intron 1 of 8)	intron (NM_026644, intron 1 of 8)	650.0	NM_026644	68262.0	Mm.258300	NM_026644	ENSMUSG00000023827	Agpat4	1500003P24Rik	1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-3170179-2	chr11	3170084	3170284	+	1000.0	f0_balb.idr|f1_balb.idr	intron (NM_030207, intron 7 of 32)	MTC|LTR|ERVL-MaLR	23279.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-50616559-1	chr17	50616459	50616659	+	617.0	f1_c57bl6.idr	intron (NM_013880, intron 3 of 5)	MTD-int|LTR|ERVL-MaLR	-82122.0	NM_001297747	12228.0	Mm.392910	NM_009770	ENSMUSG00000022863	Btg3	ANA|tob5	B cell translocation gene 3	protein-coding	1.31523957588269	3.03349833429383	1.15467475415331	2.05900549674982	1.522349575563	2.22330893306142	2.6611142050579	1.78146220781649	-0.0348797388741173	0.973679954301236	0.998431161219273
Merged-chr11-86575761-2	chr11	86575661	86575861	+	916.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	8397.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-94235633-2	chr11	94235533	94235733	+	590.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_181819)	TTS (NM_181819)	6946.0	NM_181819	278507.0	Mm.342216	NM_181819	ENSMUSG00000044177	Wfikkn2	2610304F08Rik|AY100450|Gasp1|WFIKKNRP	WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47795627-4	chr17	47795509	47795709	+	858.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9865.0	NM_011549	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	-0.735561205416019	-0.725802219566502	-0.729007106423444	-0.203745749985781	-0.734954117726819	-0.725078794455307	-0.728300872724531	-0.304367984195515	-0.384302916596532	0.897289854629639	1
Merged-chr7-126949938-4	chr7	126949820	126950020	+	993.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252567)	promoter-TSS (NM_001252567)	-338.0	NM_001361488	233879.0	Mm.444143	NM_001039645	ENSMUSG00000046378	Asphd1	A830007L07Rik|Gm168	aspartate beta-hydroxylase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-85027435-3	chr2	85027352	85027552	+	860.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145526, intron 1 of 11)	intron (NM_145526, intron 1 of 11)	8382.0	NM_145526	228139.0	Mm.440375	NM_145526	ENSMUSG00000027071	P2rx3	4930513E20Rik|P2X3	purinergic receptor P2X, ligand-gated ion channel, 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-12842702-4	chr10	12842581	12842781	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011682, intron 1 of 73)	intron (NM_011682, intron 1 of 73)	19054.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-110711895-2	chr12	110711795	110711995	+	776.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F1|SINE|Alu	-15500.0	NM_010480	15519.0	Mm.1843	NM_010480	ENSMUSG00000021270	Hsp90aa1	86kDa|89kDa|AL024080|AL024147|Hsp86-1|Hsp89|Hsp90|Hspca|hsp4	heat shock protein 90, alpha (cytosolic), class A member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-61384308-4	chr18	61384222	61384422	+	969.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133249, intron 1 of 11)	intron (NM_133249, intron 1 of 11)	13578.0	NR_029879	723889.0		NR_029879	ENSMUSG00000105200	Mir378a	Mir378|Mirn378|mmu-mir-378|mmu-mir-378a	microRNA 378a	ncRNA	0.116036756329564	-0.247361825988366	-0.251992079906443	-0.255564463422074	0.539587457666202	-0.246318079087906	-0.0687609406279098	-0.25494036957034	1.62788402537647	0.503317547386049	1
Merged-chr13-98868724-3	chr13	98868619	98868819	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178716, intron 7 of 23)	intron (NM_178716, intron 7 of 23)	22323.0	NM_001048267	238799.0	Mm.173286	NM_178716	ENSMUSG00000009470	Tnpo1	AU021749|D13Ertd688e|IPO2|Kpnb2|MIP|MIP1|TRN	transportin 1	protein-coding	1.09665610449909	1.56893260846299	1.20560869111571	1.69421484718354	3.00102164634636	3.67203542371862	2.96794856414895	2.78450883058449	4.28905998590664	5.06484038554663e-05	0.00175629927588984
Merged-chr7-101617081-2	chr7	101617038	101617238	+	747.0	f0_balb.idr|f0_c57.idr	Intergenic	MLTR11B|LTR|ERVK	-35977.0	NM_019915	11872.0	Mm.57008	NM_019915	ENSMUSG00000030651	Art2b	ART2.2|ARTC2|Art|Ly92b|Rt-6|Rt6|Rt6-2	ADP-ribosyltransferase 2b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-64600844-4	chr1	64600749	64600949	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009952, exon 9 of 9)	3' UTR (NM_009952, exon 9 of 9)	16319.0	NM_025964	67099.0	Mm.46394	NM_025964	ENSMUSG00000025956	Mettl21a	2310038H17Rik|AI464204|Fam119a	methyltransferase like 21A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-59570970-2	chr16	59570876	59571076	+	688.25	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15224.0	NM_174848	224273.0	Mm.246424	NM_174848	ENSMUSG00000022723	Crybg3	5031404N19|AU022790|Gm9581	beta-gamma crystallin domain containing 3	protein-coding	3.38020345838337	2.96485642098216	3.27060880959053	1.98519475348096	1.71923171902841	1.17962398765281	1.1360648992055	1.09664021082529	-4.26690587639518	0.000179206827654712	0.00494660318604578
Merged-chr6-120155641-4	chr6	120155532	120155732	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016718, intron 1 of 3)	intron (NM_016718, intron 1 of 3)	-38191.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-47077824-2	chr3	47077724	47077924	+	613.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	-177042.0	NR_105800	102465199.0		NR_105800	ENSMUSG00000098417	Mir6379	Gm27730|mmu-mir-6379	microRNA 6379	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-71557105-4	chr1	71557003	71557203	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026195)	promoter-TSS (NM_026195)	-53.0	NM_026195	108147.0	Mm.38010	NM_026195	ENSMUSG00000026192	Atic	2610509C24Rik|AA536954|AW212393	5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-152749702-2	chr3	152749602	152749802	+	739.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025662, intron 9 of 10)	intron (NM_025662, intron 9 of 10)	35602.0	NM_025662	329777.0	Mm.331447	NM_025662	ENSMUSG00000039047	Pigk	3000001O05Rik|Gm38470|PIG-K	phosphatidylinositol glycan anchor biosynthesis, class K	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-83527871-4	chr17	83527774	83527974	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-13541.0	NM_001159529	20463.0	Mm.30072	NM_009187	ENSMUSG00000024248	Cox7a2l	COX7AR|COX7RP|EB1|SIG-81|SIG81|Silg81	cytochrome c oxidase subunit VIIa polypeptide 2-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-110813918-1	chr5	110813818	110814018	+	660.0	f1_c57bl6.idr	Intergenic	Intergenic	-3837.0	NM_001347394	22241.0	Mm.271898	NM_009469	ENSMUSG00000029512	Ulk1	AU041434|Unc51.1|mKIAA0722	unc-51 like kinase 1	protein-coding	0.84900102059716	1.24216985634023	1.39030824521195	1.03017851730691	0.559818181983273	0.590013516640816	0.580265064225814	1.03673900261511	-2.38036112223737	0.140776797077695	0.585503385997659
Merged-chr3-37634867-2	chr3	37634767	37634967	+	774.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5080.0	NM_001305441	24063.0	Mm.330986	NM_011896	ENSMUSG00000037211	Spry1	sprouty1|spry-1	sprouty RTK signaling antagonist 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-9986073-8	chr19	9986010	9986210	+	865.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010239)	TTS (NM_010239)	3464.0	NM_010239	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-92445615-4	chr16	92445513	92445713	+	812.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081549, intron 1 of 3)	B3A|SINE|B2	20556.0	NM_001081549	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-79119014-2	chr12	79118914	79119114	+	739.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-11774.0	NM_009705	11847.0	Mm.3506	NM_009705	ENSMUSG00000021125	Arg2	AII|AU022422	arginase type II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-57677536-3	chr11	57677443	57677643	+	959.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134189, intron 1 of 11)	intron (NM_134189, intron 1 of 11)	-28049.0	NR_153850	78762.0	Mm.362149	NR_153850		4933424L21Rik	-	RIKEN cDNA 4933424L21 gene	ncRNA	2.90720257655863	3.81739809777005	3.50867448686591	3.30662024444204	4.87753892885699	4.39213751071062	4.54919688685369	3.95780552939409	1.48708514659523	0.00174408692838508	0.0302392412814511
Merged-chr19-8888794-4	chr19	8888683	8888883	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025463)	promoter-TSS (NM_025463)	-9.0	NR_039598	100628605.0		NR_039598	ENSMUSG00000093314	Mir5136	mmu-mir-5136|mu-mir-5136	microRNA 5136	ncRNA	5.87402534395022	5.63147413067305	5.31290183002568	5.47534696506637	6.1113054410692	5.8602455767609	5.86734202055092	5.67369978375644	0.331090688101424	0.195053511396258	0.675706585740666
Merged-chr17-15830902-4	chr17	15830813	15831013	+	961.4833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-4327.0	NM_178615	68799.0	Mm.293466	NM_178615	ENSMUSG00000048027	Rgmb	1110059F19Rik|DRAGON	repulsive guidance molecule family member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-50066187-4	chr18	50066100	50066300	+	817.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134131, intron 1 of 1)	intron (NM_134131, intron 1 of 1)	-12538.0	NR_155293	102635912.0	Mm.440627	NR_155293		C030005K06Rik	-	RIKEN cDNA C030005K06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-69507926-2	chr18	69507826	69508026	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 5 of 19)	intron (NM_001361128, intron 5 of 19)	161766.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-87790258-2	chr3	87790158	87790358	+	553.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033124, intron 3 of 16)	intron (NM_001033124, intron 3 of 16)	4904.0	NM_001033124	18211.0	Mm.80682	NM_001033124	ENSMUSG00000028072	Ntrk1	C80751|Tkr|TrkA|trk	neurotrophic tyrosine kinase, receptor, type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-87311462-2	chr17	87311362	87311562	+	937.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028639, intron 5 of 19)	intron (NM_028639, intron 5 of 19)	28576.0	NM_028639	225049.0	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135921937-2	chr4	135921837	135922037	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_024243, intron 1 of 7)	intron (NM_024243, intron 1 of 7)	1211.0	NM_024243	71665.0	Mm.439940	NM_024243	ENSMUSG00000028673	Fuca1	0610006A03Rik|9530055J05Rik|Afuc|Fuca	fucosidase, alpha-L- 1, tissue	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56269345-4	chr17	56269248	56269448	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_174989)	TTS (NM_174989)	7419.0	NM_174989	106759.0	Mm.203952	NM_174989	ENSMUSG00000047123	Ticam1	AW046014|AW547018|TICAM-1|TRIF	toll-like receptor adaptor molecule 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84843543-2	chr8	84843443	84843643	+	640.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_007591, intron 7 of 8)	intron (NM_007591, intron 7 of 8)	-2878.0	NM_009010	19358.0	Mm.255539	NM_009010	ENSMUSG00000003813	Rad23a	2310040P19Rik|AL024030|HR23A|mHR23A	RAD23 homolog A, nucleotide excision repair protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-75708703-2	chr2	75708603	75708803	+	626.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR26_Mus|LTR|ERVK	-4040.0	NM_010902	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-71679989-2	chr16	71679889	71680089	+	760.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4A|LINE|L1	430085.0	NR_040576	78221.0	Mm.399298	NR_040576		4930567J20Rik	-	RIKEN cDNA 4930567J20 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-67448236-4	chr17	67448153	67448353	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-93762.0	NM_001357625	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132049258-4	chr4	132049182	132049382	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001128606)	promoter-TSS (NM_001128606)	-204.0	NM_001128606	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-61639603-2	chr18	61639503	61639703	+	605.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045420)	promoter-TSS (NR_045420)	-50.0	NR_045420	545261.0	Mm.426593	NR_045420	ENSMUSG00000098098	Bvht	Braveheart|Gm20748	braveheart long non-coding RNA	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-46467463-2	chr17	46467363	46467563	+	645.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001162864, exon 13 of 15)	exon (NM_001162864, exon 13 of 15)	20212.0	NM_001162864	106763.0	Mm.297613	NM_175351	ENSMUSG00000015599	Ttbk1	AU017937|AW048023|C330008L01Rik	tau tubulin kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-103434185-4	chr12	103434073	103434273	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026790)	promoter-TSS (NM_026790)	-16.0	NM_026790	52668.0	Mm.2121	NM_026790	ENSMUSG00000064215	Ifi27	1110013J02Rik|2900026P10Rik|D12Ertd647e|ISG12a|Ifi27l1	interferon, alpha-inducible protein 27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-83397879-4	chr17	83397786	83397986	+	826.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357886, intron 1 of 21)	intron (NM_001357886, intron 1 of 21)	46955.0	NM_001357886	78798.0	Mm.295565	NM_199466	ENSMUSG00000032624	Eml4	4930443C24Rik|AI644019	echinoderm microtubule associated protein like 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-63968436-2	chr5	63968336	63968536	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145923, intron 1 of 6)	CpG	461.0	NM_145923	100532.0	Mm.243632	NM_145923	ENSMUSG00000047881	Rell1	AA536743	RELT-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166759377-2	chr2	166759277	166759477	+	850.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34390.0	NM_023815	76367.0	Mm.330796	NM_023815	ENSMUSG00000042854	Trp53rkb	2810408M09Rik|4933401B08Rik|5630401H01Rik|Nori-2|PRPK|Tp53rk|Trp53rk|Trp53tk|mNori-2p	transformation related protein 53 regulating kinase B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-32225642-2	chr11	32225528	32225728	+	768.791626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010822)	promoter-TSS (NM_010822)	-877.0	NM_010822	268395.0	Mm.263161	NM_010822	ENSMUSG00000020287	Mpg	9830006D05|AI326268|APNG|Aag|Mid1	N-methylpurine-DNA glycosylase	protein-coding	-0.642598488819462	-0.628877047080922	-0.633342471792953	0.315709597752549	-0.641733915057852	-0.407306392227374	-0.632355120379731	-0.636200866965999	-2.63581250326711	0.338390902768333	1
Merged-chr8-122552920-1	chr8	122552820	122553020	+	629.0	f1_c57bl6.idr	Intergenic	Intergenic	-1591.0	NM_001357349	234839.0	Mm.37324	NM_001037298	ENSMUSG00000014444	Piezo1	9630020g22|Fam38a|mKIAA0233	piezo-type mechanosensitive ion channel component 1	protein-coding	1.69393141099336	2.82372594358348	1.03479281908907	2.4234613103652	1.94786730019629	2.08917913378376	1.04142595367027	1.01523401451051	-1.35121830586855	0.259296122078541	0.759363289253582
Merged-chr6-70798415-2	chr6	70798315	70798515	+	604.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TTG)n|Simple_repeat|Simple_repeat	-6240.0	NM_009075	19895.0	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-83809886-4	chr7	83809774	83809974	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15035.0	NM_029335	75556.0	Mm.17649	NM_029335	ENSMUSG00000011154	Cfap161	1700026D08Rik|AW047638|AW551802	cilia and flagella associated protein 161	protein-coding	4.64256855857764	4.98765820593925	3.45441077942119	5.00496536209508	4.60359256857207	5.52988054414301	4.31772268984787	5.02737853184441	0.359904459073907	0.397471619840735	0.883903683534674
Merged-chr18-46462458-2	chr18	46462358	46462558	+	683.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3358.0	NR_045438	72076.0	Mm.82766	NM_028086		Mospd4	2010013H21Rik	motile sperm domain containing 4	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-87055062-3	chr17	87054984	87055184	+	965.644409	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29523.0	NM_019936	56724.0	Mm.109329	NM_019936	ENSMUSG00000024146	Cript	1200020A08Rik|AA589469	cysteine-rich PDZ-binding protein	protein-coding	1.98224936725452	2.54576146542429	2.3647923064873	2.08792147717699	1.75237077689026	1.95361655598224	2.27987369850771	1.25723216112084	-1.0316695364856	0.28342323174098	0.786669941647505
Merged-chr16-22046139-3	chr16	22046039	22046239	+	864.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027488, intron 16 of 16)	PB1D10|SINE|Alu	36655.0	NM_001357424	75826.0	Mm.297431	NM_029457	ENSMUSG00000022855	Senp2	2310007L05Rik|4930538C18Rik|AI646780|AW554757|Smt3ip2|SuPr-1|mKIAA1331	SUMO/sentrin specific peptidase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-7595405-4	chr9	7595305	7595505	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24009.0	NM_001310717	234911.0	Mm.334940	NM_001030289	ENSMUSG00000070323	Mmp27	Gm180	matrix metallopeptidase 27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-99196437-4	chr13	99196365	99196565	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004149, intron 1 of 4)	intron (NM_001004149, intron 1 of 4)	11642.0	NM_001004149	238803.0	Mm.343207	NM_001004149	ENSMUSG00000050919	Zfp366	DC-SCRIPT|Znf366	zinc finger protein 366	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-9506065-5	chr18	9506014	9506214	+	840.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55960.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	2.62702627466428	2.95811647536323	1.2417265205437	2.24757772100023	2.42624843326062	2.29320667878036	1.24938971343398	1.68027315965963	-0.926051064466883	0.368603430270982	0.862916999449085
Merged-chr1-45868893-4	chr1	45868788	45868988	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56706.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-39268980-3	chr3	39268868	39269068	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	382028.0	NM_183221	329628.0	Mm.316210	NM_183221	ENSMUSG00000046743	Fat4	6030410K14Rik|9430004M15	FAT atypical cadherin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-50130539-4	chr17	50130445	50130645	+	980.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181397, intron 2 of 9)	intron (NM_181397, intron 2 of 9)	59952.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	2.94233984210937	3.42560934801805	1.37356599190363	1.81630110637382	2.76261459448432	2.32096830497555	2.07599169914307	2.43108780277934	-0.46248269248209	0.610123069247473	0.974994217478847
Merged-chr16-20552711-2	chr16	20552611	20552811	+	720.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013852, intron 14 of 20)	intron (NM_013852, intron 14 of 20)	4108.0	NM_013852	27406.0	Mm.27135	NM_013852	ENSMUSG00000003234	Abcf3	AI326318|AU016058|BB119416	ATP-binding cassette, sub-family F (GCN20), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-182959355-4	chr1	182959253	182959453	+	944.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016928, intron 1 of 3)	intron (NM_016928, intron 1 of 3)	4565.0	NM_016928	53791.0	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-27291601-4	chr3	27291496	27291696	+	947.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-25481.0	NM_009425	22035.0	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-14090437-4	chr8	14090335	14090535	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001034862)	promoter-TSS (NM_001034862)	-108.0	NM_001034862	234086.0	Mm.268896	NM_001034862	ENSMUSG00000051978	Erich1	-	glutamate rich 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-164806316-2	chr2	164806216	164806416	+	762.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_178375, intron 1 of 1)	intron (NM_178375, intron 1 of 1)	1202.0	NM_178375	67538.0	Mm.33184	NM_178375	ENSMUSG00000045822	Zswim3	4921517A06Rik|C86566	zinc finger SWIM-type containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-12501045-3	chr19	12500932	12501132	+	983.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172442, exon 1 of 9)	exon (NM_172442, exon 1 of 9)	964.0	NM_172442	207521.0	Mm.247695	NM_172442	ENSMUSG00000039982	Dtx4	AI449438|BC044798|D930042H13|RNF155	deltex 4, E3 ubiquitin ligase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-164586318-4	chr1	164586222	164586422	+	880.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	83015.0	NR_151593	102635083.0	Mm.98705	NR_151593	ENSMUSG00000097281	Gm26685	-	predicted gene, 26685	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-102203510-4	chr15	102203389	102203589	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289694)	promoter-TSS (NM_001289694)	-156.0	NM_001289694	68744.0	Mm.352945	NM_153194	ENSMUSG00000046897	Zfp740	1110034O07Rik|AW548228|Znf740	zinc finger protein 740	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-102895051-4	chr13	102894941	102895141	+	929.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175171, intron 4 of 28)	intron (NM_175171, intron 4 of 28)	134786.0	NR_130171	76624.0	Mm.426384	NR_130171	ENSMUSG00000091906	1700099I09Rik	-	RIKEN cDNA 1700099I09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-31804589-1	chr6	31804489	31804689	+	1000.0	f0_balb.idr	Intergenic	IAPLTR1_Mm|LTR|ERVK	-138458.0	NR_152155	434003.0	Mm.332979	NR_152155	ENSMUSG00000084973	Gm13848	-	predicted gene 13848	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44138094-2	chr9	44138003	44138203	+	595.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359530, intron 5 of 14)	PB1D10|SINE|Alu	3445.0	NM_001359530	84004.0	Mm.275003	NM_023061	ENSMUSG00000032135	Mcam	1-gicerin|AV025631|CD146|CD149|Muc18|s-endo|s-gicerin	melanoma cell adhesion molecule	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-156257678-2	chr2	156257578	156257778	+	578.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172674, intron 4 of 17)	intron (NM_172674, intron 4 of 17)	-54795.0	NM_027585	70873.0	Mm.475234	NM_027585	ENSMUSG00000038085	Cnbd2	4921517L17Rik|5430421B09Rik|Cris	cyclic nucleotide binding domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-112363582-2	chr10	112363482	112363682	+	651.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359753, intron 2 of 4)	Lx5|LINE|L1	92309.0	NM_001359753	268345.0	Mm.336242	NM_001025581	ENSMUSG00000035681	Kcnc2	AW047325|B230117I07|KShIIIA|Kv3.2	potassium voltage gated channel, Shaw-related subfamily, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-84296554-4	chr2	84296458	84296658	+	936.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	128708.0	NM_018782	54598.0	Mm.75467	NM_018782	ENSMUSG00000059588	Calcrl	AV071593|CRLR	calcitonin receptor-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-121422114-4	chr14	121422024	121422224	+	944.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42894.0	NM_145465	223255.0	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106392739-2	chr11	106392639	106392839	+	753.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-9958.0	NM_010494	15896.0	Mm.394	NM_010494	ENSMUSG00000001029	Icam2	CD102|Icam-2|Ly-60	intercellular adhesion molecule 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-60804337-3	chr18	60804226	60804426	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042605, intron 1 of 8)	B1_Mm|SINE|Alu	477.0	NM_010545	16149.0	Mm.439737	NM_010545	ENSMUSG00000024610	Cd74	CLIP|DHLAG|HLADG|Ia-GAMMA|Ii	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-92314424-2	chr16	92314324	92314524	+	901.8333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1958.0	NR_045300	100503166.0	Mm.443304	NR_045300	ENSMUSG00000085637	1700048M11Rik	Gm15980	RIKEN cDNA 1700048M11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153711023-2	chr2	153710923	153711123	+	863.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30264.0	NM_007896	13589.0	Mm.143877	NM_007896	ENSMUSG00000027479	Mapre1	5530600P05Rik|AI462499|AI504412|AW260097|BIM1p|D2Ertd459e|Eb1	microtubule-associated protein, RP/EB family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-37468418-1	chr9	37468318	37468518	+	796.0	f1_c57bl6.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-20903.0	NM_146222	235184.0	Mm.127892	NM_146222	ENSMUSG00000042138	Msantd2	2810450G17Rik|9530092B10Rik	Myb/SANT-like DNA-binding domain containing 2	protein-coding	2.58756948507164	2.21786343955224	2.77324101483981	1.52300025261975	0.808526211053458	0.907209110804465	0.876927625250771	0.849772987146632	-5.73556239645264	2.40255736999134e-05	0.000942022330887456
Merged-chr2-156417416-4	chr2	156417312	156417512	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3497.0	NM_001291122	13821.0	Mm.20852	NM_013510	ENSMUSG00000027624	Epb41l1	4.1N|Epb4.1l1|NBL1|mKIAA0338	erythrocyte membrane protein band 4.1 like 1	protein-coding	1.75588979598974	2.6145389219817	1.72801510459231	3.01172348874202	2.03466487904792	2.29247852275851	2.07660576351448	1.23687590248982	-1.01905081748482	0.294626176930983	0.798191705447
Merged-chr9-63644660-2	chr9	63644560	63644760	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001357323)	TTS (NM_001357323)	42014.0	NR_151671	66939.0	Mm.34338	NM_025857	ENSMUSG00000037257	Aagab	2310007F21Rik|p34	alpha- and gamma-adaptin binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16913942-4	chr7	16913840	16914040	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7450.0	NM_008967	19222.0	Mm.287572	NM_008967	ENSMUSG00000043017	Ptgir	IP|PGI2	prostaglandin I receptor (IP)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-116474283-2	chr10	116474183	116474383	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021452)	promoter-TSS (NM_021452)	-760.0	NM_021452	58802.0	Mm.440652	NM_021452	ENSMUSG00000054934	Kcnmb4	1700058G18Rik|2900045G12Rik	potassium large conductance calcium-activated channel, subfamily M, beta member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-3290911-2	chr7	3290811	3291011	+	767.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001093765, intron 1 of 2)	intron (NM_001093765, intron 1 of 2)	355.0	NM_001093765	50918.0	Mm.29874	NM_016969	ENSMUSG00000068566	Myadm	D7Wsu62e	myeloid-associated differentiation marker	protein-coding	1.44813918258407	0.55662483739838	0.975725072093326	0.528530245004541	2.10190307123567	1.03167305898157	0.544445298864179	0.530720973934824	1.0760864032061	0.506085136889895	0.941980991685535
Merged-chr7-27195813-4	chr7	27195712	27195912	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001243888)	promoter-TSS (NM_001243888)	31.0	NM_001243888	414069.0	Mm.379069	NM_001243888	ENSMUSG00000078786	BC024978	-	cDNA sequence BC024978	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-118083785-4	chr4	118083690	118083890	+	898.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285520, intron 2 of 11)	intron (NM_001285520, intron 2 of 11)	51156.0	NM_001285520	20441.0	Mm.251002	NM_009176	ENSMUSG00000028538	St3gal3	ST3GalIII|ST3N|Siat3|Siat6	ST3 beta-galactoside alpha-2,3-sialyltransferase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-50838207-4	chr14	50838113	50838313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009351, intron 35 of 54)	intron (NM_009351, intron 35 of 54)	30297.0	NM_009632	11546.0	Mm.281482	NM_009632	ENSMUSG00000036023	Parp2	ADPRT-2|ARTD2|Adprt2|Adprtl2|Aspartl2|C78626|PARP-2|mPARP-2|pADPRT-2	poly (ADP-ribose) polymerase family, member 2	protein-coding	4.66169398131591	3.59948551096445	4.59284914621082	3.70019083653603	2.9121741778622	3.41745433756851	3.50326773367889	3.85574194646965	-1.09246296373178	0.035206924653055	0.265557008793391
Merged-chr2-121276322-1	chr2	121276222	121276422	+	690.0	f1_c57bl6.idr	Intergenic	Intergenic	-4915.0	NM_013735	27223.0	Mm.215389	NM_013735	ENSMUSG00000043909	Trp53bp1	53BP1|Tp53bp1|m53BP1|p53BP1	transformation related protein 53 binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-79224154-2	chr11	79224054	79224254	+	984.3333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1C|Other|Other	18870.0	NM_001042565	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-103752492-2	chr5	103752392	103752592	+	822.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1670.0	NM_133919	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-148102377-4	chr4	148102315	148102515	+	763.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_027426, exon 7 of 7)	3' UTR (NM_027426, exon 7 of 7)	-14351.0	NM_001301281	11610.0	Mm.46247	NM_009642	ENSMUSG00000029007	Agtrap	3300002E14Rik|AT1R|Atrap|D4Wsu124e	angiotensin II, type I receptor-associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-9658417-8	chr4	9658285	9658485	+	877.6478880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290367, intron 1 of 22)	intron (NM_001290367, intron 1 of 22)	10777.0	NM_023066	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	1.29206328369893	2.65162660465536	1.78798850667388	0.878702426975883	0.839428841120048	2.96114025209414	1.80516378721749	0.883373234281482	0.264795179144833	0.893564117621579	0.998431161219273
Merged-chr11-4595444-2	chr11	4595344	4595544	+	770.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028860)	promoter-TSS (NM_028860)	-629.0	NM_028860	74302.0	Mm.425669	NM_028860	ENSMUSG00000034354	Mtmr3	1700092A20Rik|AI255150|AW557713|FYVE-DSP1|ZFYVE10|mKIAA0371	myotubularin related protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-165195203-2	chr1	165195103	165195303	+	550.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145512)	promoter-TSS (NM_145512)	-765.0	NR_151712	108735.0	Mm.288369	NM_145512	ENSMUSG00000040848	Sft2d2	2010005O13Rik|AI506168|AW561909|cI-45	SFT2 domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-131422016-1	chr6	131421916	131422116	+	1000.0	f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	-33566.0	NM_011733	56449.0	Mm.458000	NM_011733	ENSMUSG00000030189	Ybx3	Csda|Dpba|MSY3|MSY4|Yb2|dbpA|oxyR	Y box protein 3	protein-coding	1.69954888176596	1.54655515669979	0.898742865098342	1.99092351764038	0.860488675435255	2.15856342092264	1.50191863292833	0.885922988141108	-0.332529822675634	0.804831014897299	0.998431161219273
Merged-chr10-34215848-3	chr10	34215731	34215931	+	825.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8280.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-107124626-4	chr11	107124527	107124727	+	926.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359590, intron 1 of 27)	intron (NM_001359590, intron 1 of 27)	7295.0	NM_176850	207165.0	Mm.343986	NM_176850	ENSMUSG00000040481	Bptf	9430093H17Rik|Falz	bromodomain PHD finger transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-94711504-4	chr13	94711409	94711609	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	A-rich|Low_complexity|Low_complexity	-77434.0	NM_009321	21371.0	Mm.379025	NM_009321	ENSMUSG00000042043	Tbca	Tbca13	tubulin cofactor A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-112213476-4	chr7	112213368	112213568	+	890.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12368.0	NM_177282	320878.0	Mm.52312	NM_177282	ENSMUSG00000038244	Mical2	5330438E18Rik|9530064J02|MICAL-2|mKIAA0750	microtubule associated monooxygenase, calponin and LIM domain containing 2	protein-coding	-0.214881985705032	-0.444617505590548	-0.0344133423803444	-0.302355209304288	-0.209002904612101	-0.443898031116097	-0.447095809937363	-0.449804591404464	-1.6037059259977	0.515247066714104	1
Merged-chr15-79544750-4	chr15	79544644	79544844	+	907.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040187, intron 1 of 12)	intron (NM_001040187, intron 1 of 12)	1815.0	NM_199079	67040.0	Mm.29644	NM_152806	ENSMUSG00000055065	Ddx17	2610007K22Rik|A430025E01Rik|AI047725|C80929|Gm926|p72	DEAD (Asp-Glu-Ala-Asp) box polypeptide 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-98436333-2	chr4	98436233	98436433	+	922.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001005784, intron 11 of 19)	intron (NM_001005784, intron 11 of 19)	25306.0	NM_001355177	12695.0	Mm.90218	NM_007704	ENSMUSG00000061859	Patj	Cipp|Inadl	PATJ, crumbs cell polarity complex component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-81581396-3	chr17	81581271	81581471	+	725.966675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 2 of 8)	L2|LINE|L2	157016.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117966864-2	chr11	117966764	117966964	+	724.833374	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007707, exon 2 of 2)	3' UTR (NM_007707, exon 2 of 2)	2502.0	NM_007707	12702.0	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135708486-2	chr5	135708386	135708586	+	795.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008898, intron 1 of 15)	B1F2|SINE|Alu	19341.0	NM_008898	18984.0	Mm.3863	NM_008898	ENSMUSG00000005514	Por	4933424M13Rik|CPR|CYPOR|P450R	P450 (cytochrome) oxidoreductase	protein-coding	3.06308303392445	1.46092705858858	2.72090825158953	2.54413085833802	2.77182066280432	1.46975884912033	2.6400042217945	2.74866405464259	-0.13609810009643	0.881661878222857	0.998431161219273
Merged-chr3-133582163-4	chr3	133582094	133582294	+	914.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37804.0	NM_001346736	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-16309776-4	chr5	16309679	16309879	+	917.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110843, intron 12 of 38)	intron (NM_001110843, intron 12 of 38)	-243716.0	NM_001289460	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-8918915-2	chr3	8918815	8919015	+	570.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025434, intron 1 of 2)	intron (NM_025434, intron 1 of 2)	4942.0	NM_025434	66230.0	Mm.38460	NM_025434	ENSMUSG00000040269	Mrps28	1500012D08Rik|AW061224	mitochondrial ribosomal protein S28	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-52750921-3	chr18	52750832	52751032	+	747.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16879.0	NM_026408	67847.0	Mm.292168	NM_026408	ENSMUSG00000024534	Sncaip	2810407O15Rik|4933427B05Rik|BB104594|SYPH1	synuclein, alpha interacting protein (synphilin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-4876767-4	chr5	4876663	4876863	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011074, intron 14 of 14)	intron (NM_011074, intron 14 of 14)	-118547.0	NM_021457	14362.0	Mm.246003	NM_021457	ENSMUSG00000044674	Fzd1	AW227548|FZ-1|Fz1	frizzled class receptor 1	protein-coding	1.75886378168237	1.82178027784012	2.3103982212443	1.84790909063023	1.65190917617663	1.83443723092434	1.43664526679189	2.07614635205302	-0.536725009153299	0.587671047279799	0.968220700072259
Merged-chr1-189657670-3	chr1	189657579	189657779	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081363, exon 12 of 18)	exon (NM_001081363, exon 12 of 18)	30407.0	NM_001081363	108000.0	Mm.129746	NM_001081363	ENSMUSG00000026605	Cenpf	6530404A22Rik|AI325968|CENF|Lek1|PRO1779|mitosin	centromere protein F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-76944213-4	chr18	76944117	76944317	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039201)	promoter-TSS (NM_001039201)	102.0	NM_001039202	76987.0	Mm.236127	NM_029826	ENSMUSG00000025421	Hdhd2	0610039H12Rik|3110052N05Rik	haloacid dehalogenase-like hydrolase domain containing 2	protein-coding	5.63222007472551	6.20143585726055	6.41458203710601	5.2211533438948	5.95858379759564	5.18128635428813	6.67452873717215	5.53644599209223	0.0174154782480376	0.958614175243116	0.998431161219273
Merged-chr10-117222570-2	chr10	117222470	117222670	+	710.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026570, intron 1 of 6)	B4A|SINE|B4	1937.0	NM_026570	64050.0	Mm.233529	NM_026570	ENSMUSG00000020171	Yeats4	4930573H17Rik|B230215M10Rik|GAS41|NuBI-1	YEATS domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-92436232-4	chr5	92436150	92436350	+	968.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA5A|LINE|L1	-1051.0	NM_183392	269113.0	Mm.275289	NM_183392	ENSMUSG00000034826	Nup54	3110079L04Rik|54kDa	nucleoporin 54	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-35428300-4	chr8	35428206	35428406	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52565.0	NM_177741	244416.0	Mm.247126	NM_177741	ENSMUSG00000046794	Ppp1r3b	6430576E21|AW821953|GL|PTG	protein phosphatase 1, regulatory (inhibitor) subunit 3B	protein-coding	4.99814378223648	5.22537865999036	4.35883916625443	4.84143703756679	4.91855156279309	5.07196234687918	4.65954569082494	4.0022318677398	-0.211063218264342	0.572484439051256	0.963911477197412
Merged-chr7-30973954-4	chr7	30973835	30974035	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017405)	promoter-TSS (NM_017405)	131.0	NR_038860	76415.0	Mm.259739	NM_175240	ENSMUSG00000046826	Fam187b	1700020B09Rik|Tmem162	family with sequence similarity 187, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-8534807-4	chr19	8534713	8534913	+	877.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56441.0	NM_001164634	19879.0	Mm.285294	NM_031194	ENSMUSG00000063796	Slc22a8	Oat3|Roct	solute carrier family 22 (organic anion transporter), member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-107389939-4	chr1	107389831	107390031	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	27617.0	NM_025867	66957.0	Mm.12638	NM_025867	ENSMUSG00000026327	Serpinb11	2310046M08Rik|AU015399	serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), member 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28709680-4	chr7	28709584	28709784	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-7098.0	NM_001310687	50760.0	Mm.358659	NM_015796	ENSMUSG00000030598	Fbxo17	Fbg4|Fbx17|Fbxo26	F-box protein 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133108062-4	chr4	133107969	133108169	+	929.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22564.0	NM_153423	242687.0	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	3.67867213449655	3.30793895858889	3.98701386304555	2.66614182619476	4.27274212626346	4.08166742333924	4.89521373960174	4.51015083527688	1.3374279548781	0.00597241208123679	0.0763631710873066
Merged-chr5-72086699-2	chr5	72086599	72086799	+	600.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008069, intron 5 of 8)	RMER1B|Other|Other	81490.0	NM_001356611	27784.0	Mm.44223	NM_178599	ENSMUSG00000029213	Commd8	C77770|D5Buc26e	COMM domain containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-84074189-4	chr17	84074109	84074309	+	994.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4451.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-83771638-3	chr2	83771542	83771742	+	790.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008402, intron 12 of 29)	intron (NM_008402, intron 12 of 29)	-41086.0	NM_175514	241520.0	Mm.330351	NM_175514	ENSMUSG00000048388	Fam171b	D430039N05Rik	family with sequence similarity 171, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-31172270-4	chr2	31172209	31172409	+	985.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178760, intron 5 of 17)	intron (NM_178760, intron 5 of 17)	19993.0	NM_178760	277463.0	Mm.236074	NM_178760	ENSMUSG00000000194	Gpr107	9930033D15Rik|AI790205|C530034M11|mKIAA1624	G protein-coupled receptor 107	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-61965197-2	chr9	61965097	61965297	+	678.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028748, intron 5 of 7)	intron (NM_028748, intron 5 of 7)	-18398.0	NM_024245	71819.0	Mm.259374	NM_024245	ENSMUSG00000032254	Kif23	3110001D19Rik|C87313|CHO1|Knsl5|MKLP-1|MKLP1	kinesin family member 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-79563755-2	chr14	79563655	79563855	+	609.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286412, intron 3 of 7)	RSINE1|SINE|B4	-23905.0	NM_026474	67955.0	Mm.18972	NM_026474	ENSMUSG00000022024	Sugt1	2410174K12Rik|SGT1	SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-31030380-4	chr9	31030306	31030506	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172765)	promoter-TSS (NM_172765)	-238.0	NM_001115130	235132.0	Mm.239355	NM_172765	ENSMUSG00000047412	Zbtb44	6030404E16Rik|Btbd15|E230011F09	zinc finger and BTB domain containing 44	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-165693893-2	chr1	165693793	165693993	+	747.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038846, intron 1 of 5)	intron (NM_001038846, intron 1 of 5)	14201.0	NM_001038846	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-67353098-4	chr17	67352999	67353199	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	1360.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101986121-4	chr11	101985906	101986106	+	919.3020630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-1050.0	NM_029287	75437.0	Mm.108632	NM_029287	ENSMUSG00000010841	1700006E09Rik	Cfap97d1	RIKEN cDNA 1700006E09 gene	protein-coding	-0.0893686331486467	-0.463391463172037	-0.467604602900762	-0.470858557392463	0.340611866815279	-0.462442436814302	-0.46667494038982	-0.470289882897282	1.42140402867805	0.603598116885472	1
Merged-chr11-115711839-1	chr11	115711739	115711939	+	542.0	f1_c57bl6.idr	Intergenic	(TC)n|Simple_repeat|Simple_repeat	-3242.0	NM_008163	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	1.44480100824103	0.932146158860401	0.906524908532935	1.0309766143726	1.3818704061451	0.937879044088877	0.912203831257992	1.03611541768454	-0.0853470258838699	0.949018937348124	0.998431161219273
Merged-chr2-58159302-4	chr2	58159210	58159410	+	891.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139200, intron 1 of 7)	intron (NM_139200, intron 1 of 7)	812.0	NM_139200	227929.0	Mm.273905	NM_139200	ENSMUSG00000026832	Cytip	A130053M09Rik|AI462064|C80816|Cbp|Cybr|Pscdbp	cytohesin 1 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85653354-2	chr12	85653254	85653454	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33366.0	NM_016767	53314.0	Mm.6672	NM_016767	ENSMUSG00000034266	Batf	B-ATF|SFA-2	basic leucine zipper transcription factor, ATF-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-99496984-2	chr9	99496884	99497084	+	783.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028768, intron 17 of 21)	intron (NM_028768, intron 17 of 21)	26563.0	NR_028123	69797.0	Mm.307159	NR_028123	ENSMUSG00000046242	1600029I14Rik	-	RIKEN cDNA 1600029I14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-38308834-2	chr5	38308734	38308934	+	625.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10675.0	NM_013503	13492.0	Mm.167154	NM_013503	ENSMUSG00000039358	Drd5	D5R|Drd-5|Drd1b|Gpcr1	dopamine receptor D5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-53444069-4	chr11	53443969	53444169	+	880.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	10783.0	NM_008110	14566.0	Mm.9714	NM_008110	ENSMUSG00000018238	Gdf9	Gdf-9	growth differentiation factor 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-46607463-3	chr7	46607354	46607554	+	858.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013789, intron 8 of 10)	intron (NM_013789, intron 8 of 10)	32353.0	NM_013789	27414.0	Mm.76659	NM_013789	ENSMUSG00000030839	Sergef	DelGEF|Gef|Gnef|Gnefr	secretion regulating guanine nucleotide exchange factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-33137805-2	chr14	33137705	33137905	+	793.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001146022, intron 11 of 58)	intron (NM_001146022, intron 11 of 58)	47261.0	NM_001146022	545030.0	Mm.318345	NM_001146022	ENSMUSG00000051506	Wdfy4	Gm18810	WD repeat and FYVE domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25376783-2	chr7	25376683	25376883	+	560.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_073028)	promoter-TSS (NR_073028)	-36.0	NR_073028	654804.0	Mm.389841	NM_001039540	ENSMUSG00000053714	4732471J01Rik	-	RIKEN cDNA 4732471J01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-57550319-4	chr16	57550203	57550403	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177871, intron 1 of 1)	intron (NM_001177871, intron 1 of 1)	1061.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-34208643-2	chr7	34208543	34208743	+	569.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008155, intron 9 of 17)	intron (NM_008155, intron 9 of 17)	-11973.0	NM_001360710	68079.0	Mm.38173	NM_026549	ENSMUSG00000002635	Pdcd2l	6030457N17Rik	programmed cell death 2-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-52382940-2	chr5	52382840	52383040	+	689.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001256059, intron 11 of 11)	intron (NM_001256059, intron 11 of 11)	19136.0	NM_011435	20657.0	Mm.2407	NM_011435	ENSMUSG00000072941	Sod3	AI314465|EC-SOD	superoxide dismutase 3, extracellular	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-4388095-4	chr10	4388018	4388218	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359811)	promoter-TSS (NM_001359811)	-10.0	NM_001033466	381990.0	Mm.262466	NM_001033466	ENSMUSG00000075327	Zbtb2	Gm1103	zinc finger and BTB domain containing 2	protein-coding	2.13633765323814	2.14347916288414	2.75602440442882	2.52734216919894	2.04865182790148	1.82715964848851	1.57118169381634	1.88504362387244	-1.46849821889346	0.101911189344843	0.496322203777654
Merged-chr11-70237867-4	chr11	70237781	70237981	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177603)	promoter-TSS (NM_001177603)	33.0	NM_001177601	104457.0	Mm.30016	NM_026757	ENSMUSG00000020831	0610010K14Rik	1110020A23Rik|AL033328|AU045833|Bap18	RIKEN cDNA 0610010K14 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-110395867-4	chr13	110395771	110395971	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152804, intron 1 of 13)	intron (NM_152804, intron 1 of 13)	827.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-20898763-2	chr11	20898663	20898863	+	886.3333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-67655.0	NM_173752	216551.0	Mm.76694	NM_173752	ENSMUSG00000042363	Lgalsl	1110067D22Rik|A530071M23|Grpa|Hspc159|Lgalsla	lectin, galactoside binding-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71632689-2	chr8	71632589	71632789	+	833.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001029873, intron 39 of 41)	intron (NM_001029873, intron 39 of 41)	-1583.0	NR_106035	102466799.0		NR_106035	ENSMUSG00000098976	Mir6769b	Gm27546|mmu-mir-6769b	microRNA 6769b	ncRNA	1.51732357859024	1.85770468316108	0.718614367605637	0.705153406453661	1.98733050964933	0.739382312604048	0.722405997596512	1.26943690014038	-0.00895169754811058	0.995347539322685	0.998491424894068
Merged-chr3-123321880-1	chr3	123321780	123321980	+	627.0	f1_balb.idr	intron (NM_027135, intron 8 of 22)	intron (NM_027135, intron 8 of 22)	54384.0	NM_027135	69608.0	Mm.29293	NM_027135	ENSMUSG00000039234	Sec24d	2310020L09Rik|Gm1349	Sec24 related gene family, member D (S. cerevisiae)	protein-coding	0.737195002376132	1.50773103042834	2.68713691578649	0.77023742960637	0.742243693624248	1.52140745250894	1.4594955731159	1.55360996862228	-0.999100580501411	0.46214915825966	0.921194606787634
Merged-chr9-35035310-2	chr9	35035210	35035410	+	877.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_026324, exon 16 of 16)	3' UTR (NM_026324, exon 16 of 16)	-81418.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-70638167-4	chr13	70638090	70638290	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144837)	promoter-TSS (NM_144837)	-556.0	NM_144837	218333.0	Mm.139738	NM_144837	ENSMUSG00000034525	Ice1	C77245|mKIAA0947	interactor of little elongation complex ELL subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-79665376-2	chr10	79665276	79665476	+	640.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358785, intron 2 of 3)	intron (NM_001358785, intron 2 of 3)	817.0	NM_001358785	17123.0	Mm.391556	NM_013591	ENSMUSG00000020310	Madcam1	AV211525|MAdCAM-1	mucosal vascular addressin cell adhesion molecule 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-51327738-5	chr3	51327667	51327867	+	883.2666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023502, intron 1 of 9)	L1M4c|LINE|L1	12877.0	NM_001356358	69257.0	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-119249390-3	chr9	119249287	119249487	+	681.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359582, intron 13 of 18)	intron (NM_001359582, intron 13 of 18)	-17695.0	NR_033303	109280.0	Mm.261557	NM_175420	ENSMUSG00000092212	Slc22a13b-ps	9330176C04Rik|Slc22a13b	solute carrier family 22 (organic cation transporter), member 13b, pseudogene	pseudo	0.898925782136811	2.39371529569961	2.00768248815129	2.22885472876972	1.13096480487511	0.987328740900843	0.961589154707824	2.24193082335724	-1.39452377280368	0.2770793531237	0.781366007374687
Merged-chr10-60333835-4	chr10	60333759	60333959	+	862.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252635, intron 40 of 68)	intron (NM_001252635, intron 40 of 68)	-12992.0	NM_001159572	74048.0	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107633509-4	chr9	107633411	107633611	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008138, intron 1 of 8)	intron (NM_008138, intron 1 of 8)	1831.0	NM_008138	14678.0	Mm.196464	NM_008138	ENSMUSG00000032562	Gnai2	C76432|Galphai2|Gia|Gnai-2	guanine nucleotide binding protein (G protein), alpha inhibiting 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-61592527-4	chr3	61592427	61592627	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	228020.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120625932-2	chr11	120625832	120626032	+	847.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153056)	promoter-TSS (NM_153056)	-930.0	NM_153056	209011.0	Mm.292957	NM_153056	ENSMUSG00000025138	Sirt7	-	sirtuin 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-49258024-2	chr6	49257929	49258129	+	740.666626	f0_c57.idr|f1_c57bl6.idr	intron (NM_001362188, intron 1 of 8)	intron (NM_001362188, intron 1 of 8)	6023.0	NM_001347209	101214.0	Mm.196598	NM_198102	ENSMUSG00000029817	Tra2a	1500010G04Rik|AL022798|G430041M01Rik|mAWMS1	transformer 2 alpha	protein-coding	3.2735869423713	1.60476113353737	2.25911426040268	2.91932001992461	2.206510299144	1.32786173812316	2.27791819006251	1.73091527978573	-1.58498517194456	0.092466866680418	0.470092146793074
Merged-chr7-27489912-2	chr7	27489812	27490012	+	802.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_018820, exon 2 of 2)	exon (NM_018820, exon 2 of 2)	2959.0	NM_018820	55942.0	Mm.153684	NM_018820	ENSMUSG00000008384	Sertad1	1110032C13Rik|AV000455|AW456625|Sei-1|Sei1|TRIP-Br1	SERTA domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-13558802-4	chr2	13558692	13558892	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14128.0	NM_010067	13434.0	Mm.6979	NM_010067	ENSMUSG00000026723	Trdmt1	Dnmt2|Rnmt2	tRNA aspartic acid methyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-16746031-3	chr1	16745807	16746007	+	822.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57451.0	NM_001159711	17087.0	Mm.116844	NM_016923	ENSMUSG00000025779	Ly96	ESOP-1|MD-2|MD2	lymphocyte antigen 96	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-110447014-4	chr12	110446939	110447139	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001135001)	promoter-TSS (NM_001135001)	-140.0	NM_001135001	26931.0	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-115019455-6	chr7	115019305	115019505	+	871.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a-int|LTR|ERVL-MaLR	68131.0	NR_040319	101786.0	Mm.395157	NR_040317	ENSMUSG00000108379	A730082K24Rik	AU044236	RIKEN cDNA A730082K24 gene	ncRNA	-0.839716219971047	-0.829266059486817	-0.833614080061391	-0.672617891215954	-0.69418948778809	-0.826516586007376	-0.258116433723879	-0.835510781506982	2.10402480113867	0.453766762326729	1
Merged-chr1-171282349-2	chr1	171282249	171282449	+	584.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013919, intron 12 of 12)	intron (NM_013919, intron 12 of 12)	-1163.0	NM_008911	19044.0	Mm.266888	NM_008911	ENSMUSG00000062729	Ppox	Ppo	protoporphyrinogen oxidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-152687637-1	chr2	152687537	152687737	+	573.0	f1_balb.idr	TTS (NM_001159552)	TTS (NM_001159552)	489.0	NM_025543	66405.0	Mm.440291	NM_025543	ENSMUSG00000042814	Mcts2	2400002F11Rik|MCT-2	malignant T cell amplified sequence 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126701261-4	chr7	126701142	126701342	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301374, intron 6 of 10)	intron (NM_001301374, intron 6 of 10)	2978.0	NM_001301374	12721.0	Mm.290482	NM_009898	ENSMUSG00000030707	Coro1a	Clabp|Lmb3|TACO|p57	coronin, actin binding protein 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-137909641-4	chr4	137909528	137909728	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199307, intron 2 of 19)	intron (NM_199307, intron 2 of 19)	47391.0	NM_199307	230857.0	Mm.401062	NM_199307	ENSMUSG00000057530	Ece1	AW322500|ECE-1|ECE-1a|ECE-1b|ECE-1d	endothelin converting enzyme 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-65562723-4	chr16	65562629	65562829	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026879)	promoter-TSS (NM_026879)	-32.0	NM_026879	68942.0	Mm.432944	NM_026879	ENSMUSG00000004843	Chmp2b	1190006E07Rik	charged multivesicular body protein 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-76288599-2	chr5	76288499	76288699	+	857.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007715, intron 2 of 22)	Lx5|LINE|L1	14903.0	NM_001305222	12753.0	Mm.3552	NM_007715	ENSMUSG00000029238	Clock	5330400M04Rik|KAT13D	circadian locomotor output cycles kaput	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-149120140-3	chr4	149120028	149120228	+	921.1333619999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_104263, exon 4 of 4)	non-coding (NR_104263, exon 4 of 4)	6635.0	NM_007745	12854.0	Mm.6204	NM_007745	ENSMUSG00000028971	Cort	CST|PCST	cortistatin	protein-coding	1.93463296227702	1.12977177251581	2.97601410355378	1.0640285715739	2.28902087820229	3.38767001401637	1.10151982821969	1.75976936801852	0.804753245459612	0.674341415581805	0.99440487726309
Merged-chr6-124717082-4	chr6	124716969	124717169	+	832.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_029554)	TTS (NR_029554)	916.0	NR_029554	387159.0		NR_029554	ENSMUSG00000065474	Mir141	Mirn141|mir-141|mmu-mir-141	microRNA 141	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4067914-2	chr19	4067814	4068014	+	804.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-8467.0	NM_001362043	225884.0	Mm.440201	NM_144869	ENSMUSG00000058216	Gstp3	-	glutathione S-transferase pi 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-51692920-3	chr15	51692821	51693021	+	990.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	172540.0	NM_080635	68135.0	Mm.289800	NM_080635	ENSMUSG00000022312	Eif3h	1110008A16Rik|40kD|9430017H16Rik|EIF3-P40|EIF3-gamma|Eif3s3	eukaryotic translation initiation factor 3, subunit H	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19377396-1	chr7	19377296	19377496	+	655.0	f1_c57bl6.idr	intron (NM_001010836, intron 11 of 12)	intron (NM_001010836, intron 11 of 12)	-4643.0	NM_007949	13871.0	Mm.36524	NM_007949	ENSMUSG00000030400	Ercc2	AA407812|AU020867|AW240756|CXPD|Ercc-2|Mhdarco15|RCO015|XPD	excision repair cross-complementing rodent repair deficiency, complementation group 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117117504-3	chr11	117117391	117117591	+	846.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166507, intron 2 of 16)	intron (NM_001166507, intron 2 of 16)	2319.0	NM_001166506	74136.0	Mm.272312	NM_028777	ENSMUSG00000020823	Sec14l1	1200017E04Rik|2810012L19Rik|Naa-35	SEC14-like lipid binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180919889-3	chr1	180919799	180919999	+	823.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15123.0	NM_010094	13590.0	Mm.378911	NM_010094	ENSMUSG00000038793	Lefty1	AI450052|Ebaf|Leftb|Stra3|Tgfb4|lefty|lefty-1	left right determination factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94190346-1	chr10	94190246	94190446	+	684.5	f0_balb.idr	intron (NM_011629, intron 11 of 13)	(TTTTTG)n|Simple_repeat|Simple_repeat	-8663.0	NM_025551	66414.0	Mm.27886	NM_025551	ENSMUSG00000020022	Ndufa12	2410011G03Rik|AW112974	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12	protein-coding	1.75254553327357	0.889467544593334	0.870826939746941	1.07466277745002	1.76944028723547	1.80135864337222	0.874984254131336	2.11900625665638	1.65943812576644	0.220340212582836	0.711676741897578
Merged-chr11-70968709-2	chr11	70968609	70968809	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083331, intron 1 of 16)	intron (NM_001083331, intron 1 of 16)	1264.0	NM_172394	19069.0	Mm.288962	NM_172394	ENSMUSG00000040667	Nup88	Nup84|Prei2	nucleoporin 88	protein-coding	-1.58994551673671	-1.55912852307891	-1.56844783632235	-1.57610299769523	-1.18549093183599	-1.55710898902261	-1.56633814807757	-1.57473272746952	1.78703309985663	0.610309988231842	1
Merged-chr17-8901659-4	chr17	8901573	8901773	+	935.7374880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347321, intron 2 of 21)	MTC|LTR|ERVL-MaLR	51688.0	NM_001347321	23984.0	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-156681973-2	chr1	156681862	156682062	+	635.0	f0_balb.idr|f1_balb.idr	intron (NM_145413, intron 7 of 7)	L1ME4c|LINE|L1	-7623.0	NM_023141	30935.0	Mm.206737	NM_023141	ENSMUSG00000060519	Tor3a	Adir	torsin family 3, member A	protein-coding	2.82609492087209	2.79327321438213	2.33734710136681	2.27402601855504	3.04446103171541	2.81332781782465	2.35498799999226	2.28527893777505	0.17574710809616	0.814998157371982	0.998431161219273
Merged-chr11-83544462-4	chr11	83544338	83544538	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13920.0	NM_013653	20304.0	Mm.284248	NM_013653	ENSMUSG00000035042	Ccl5	MuRantes|RANTES|SISd|Scya5|TCP228	chemokine (C-C motif) ligand 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-52480747-4	chr12	52480667	52480867	+	953.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_136881)	promoter-TSS (NR_136881)	-158.0	NR_136881	102638611.0	Mm.363799	NR_136881	ENSMUSG00000111982	Gm35135	-	predicted gene, 35135	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133419724-2	chr4	133419628	133419828	+	957.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016981, intron 6 of 11)	intron (NM_016981, intron 6 of 11)	49952.0	NR_039582	100628620.0		NR_039582	ENSMUSG00000092745	Mir5122	mmu-mir-5122|mu-mir-5122	microRNA 5122	ncRNA	2.28862760668546	1.493928251716	1.45156060859715	2.75991897975375	2.14051235301163	1.89345784088588	1.83119559013383	1.61425271426625	-0.648510422590601	0.516785396169431	0.947641799425091
Merged-chr3-90491508-3	chr3	90491418	90491618	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133854)	promoter-TSS (NM_133854)	-505.0	NM_133854	20615.0	Mm.331182	NM_133854	ENSMUSG00000001018	Snapin	25kDa|AA407989|AV026596|Bloc1s7|Snap25bp|Snapap	SNAP-associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167933334-2	chr2	167933234	167933434	+	924.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011201, intron 1 of 8)	intron (NM_011201, intron 1 of 8)	1007.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-30851032-3	chr5	30850945	30851145	+	856.5833130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133350, intron 1 of 6)	MIRc|SINE|MIR	-10762.0	NM_001310516	100732.0	Mm.332295	NM_133350	ENSMUSG00000029166	Mapre3	AI790651|EB2|EB3|EBF3|RP3	microtubule-associated protein, RP/EB family, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-66404216-1	chr4	66404116	66404316	+	654.0	f1_c57bl6.idr	exon (NM_019514, exon 1 of 22)	exon (NM_019514, exon 1 of 22)	267.0	NM_019514	56079.0	Mm.445312	NM_019514	ENSMUSG00000028373	Astn2	1d8|Astnl|bM452J22.1	astrotactin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-54917771-4	chr6	54917679	54917879	+	900.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	53882.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-99163319-2	chr10	99163219	99163419	+	591.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_027740, intron 9 of 11)	intron (NM_027740, intron 9 of 11)	55184.0	NM_015737	14426.0	Mm.314	NM_015737	ENSMUSG00000090035	Galnt4	AV011803	polypeptide N-acetylgalactosaminyltransferase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-10318836-4	chr17	10318732	10318932	+	956.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001159517, exon 1 of 8)	exon (NM_001159517, exon 1 of 8)	529.0	NM_021881	19317.0	Mm.130694	NM_021881	ENSMUSG00000062078	Qk	1110003F05Rik|1500005P18|QkI|l(17)-1Wis|l17Wis1	quaking	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-73603697-4	chr12	73603559	73603759	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001313977, intron 2 of 14)	intron (NM_001313977, intron 2 of 14)	18863.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-40963538-2	chr14	40963438	40963638	+	785.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145928, intron 1 of 8)	intron (NM_145928, intron 1 of 8)	3358.0	NM_145928	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-3023235-2	chr9	3023134	3023334	+	779.5	f0_c57.idr|f1_balb.idr	Intergenic	GSAT_MM|Satellite|Satellite	15509.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-108634939-2	chr4	108634839	108635039	+	666.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_177045)	TTS (NM_177045)	14983.0	NM_177045	319965.0	Mm.151129	NM_177045	ENSMUSG00000028582	Cc2d1b	A830039B04Rik|Freud2	coiled-coil and C2 domain containing 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-21286234-4	chr12	21286080	21286280	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018813)	promoter-TSS (NM_018813)	104.0	NM_008403	16413.0	Mm.273333	NM_008403	ENSMUSG00000062352	Itgb1bp1	AI449260|AU019480|Icap1	integrin beta 1 binding protein 1	protein-coding	7.67533839713313	6.6635655170197	8.04722463144345	7.38194226274697	7.56011473894791	7.25723119717949	7.99518948720938	7.91740216399108	0.191410748164122	0.569040992544504	0.962718661854691
Merged-chr4-101069632-3	chr4	101069582	101069782	+	755.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183024, intron 1 of 11)	CpG	644.0	NM_183024	242570.0	Mm.185636	NM_183024	ENSMUSG00000035275	Raver2	A430091O22Rik	ribonucleoprotein, PTB-binding 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-103360775-2	chr9	103360675	103360875	+	813.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_175833, intron 2 of 4)	intron (NM_175833, intron 2 of 4)	4204.0	NM_001134427	321022.0	Mm.261025	NM_175565	ENSMUSG00000032803	Cdv3	2510010F10Rik|C230084J24Rik|C79446|TPP36	carnitine deficiency-associated gene expressed in ventricle 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-83519744-2	chr15	83519644	83519844	+	666.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1270.0	NM_001357953	319953.0	Mm.235007	NM_178869	ENSMUSG00000022442	Ttll1	6330444E16Rik|AV014541	tubulin tyrosine ligase-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-25974445-3	chr8	25974340	25974540	+	737.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029884, intron 1 of 17)	(CA)n|Simple_repeat|Simple_repeat	2304.0	NM_029884	52120.0	Mm.28326	NM_029884	ENSMUSG00000037260	Hgsnat	9430010M12Rik|AW208455|D8Ertd354e|Tmem76	heparan-alpha-glucosaminide N-acetyltransferase	protein-coding	1.4974560638088	1.05085993999042	1.01099417111129	0.63497449718484	0.622294240744189	1.34692172562674	1.29061831119802	0.636528251385518	-0.274593674058113	0.859918358712872	0.998431161219273
Merged-chr6-108571372-4	chr6	108571267	108571467	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51800.0	NR_040757	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-62341340-2	chr10	62341240	62341440	+	637.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146100)	promoter-TSS (NM_001146100)	733.0	NR_038038	70162.0	Mm.441212	NR_038038		Hk1os	2210417K05Rik	hexokinase 1, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-45559729-2	chr19	45559629	45559829	+	606.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356947)	promoter-TSS (NM_001356947)	835.0	NM_001330506	56626.0	Mm.46509	NM_020032	ENSMUSG00000025218	Poll	1110003P06Rik|AV007317	polymerase (DNA directed), lambda	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-116282108-4	chr12	116282011	116282211	+	888.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028731, intron 1 of 21)	intron (NM_028731, intron 1 of 21)	889.0	NM_028731	52635.0	Mm.273755	NM_028731	ENSMUSG00000021171	Esyt2	2410017M09Rik|4921504I16Rik|CHR2SYT|D12Ertd551e|Fam62b	extended synaptotagmin-like protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-65689812-2	chr18	65689712	65689912	+	843.666626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_207255)	TTS (NM_207255)	-8456.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-73925297-2	chr17	73925197	73925397	+	602.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011723, intron 8 of 35)	intron (NM_011723, intron 8 of 35)	24899.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-123313135-2	chr4	123313066	123313266	+	592.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001256019, exon 7 of 7)	3' UTR (NM_001256019, exon 7 of 7)	10513.0	NM_022033	64059.0	Mm.270287	NM_022033	ENSMUSG00000076436	Oxct2a	Oxct|Oxct2|Scot|Scot-t1	3-oxoacid CoA transferase 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-20929099-2	chr12	20928999	20929199	+	782.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-113320.0	NR_015521	69513.0	Mm.273972	NR_015521	ENSMUSG00000099759	1700030C10Rik	-	RIKEN cDNA 1700030C10 gene	ncRNA	-0.12334480050863	-0.337808695456786	-0.19152756960894	-0.0863047123341164	-0.224535426709271	-0.337144782488904	-0.187614765246522	-0.202819772343732	-0.662194204010768	0.756480733398122	1
Merged-chr17-63492825-4	chr17	63492717	63492917	+	999.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015794, intron 1 of 8)	intron (NM_015794, intron 1 of 8)	7763.0	NM_015794	50758.0	Mm.136366	NM_015794	ENSMUSG00000023965	Fbxl17	6330576B01Rik|AI452053|BB073797|C130023C01Rik|Fbx13|Fbxo13	F-box and leucine-rich repeat protein 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88144729-4	chr3	88144681	88144881	+	843.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310593, intron 1 of 10)	intron (NM_001310593, intron 1 of 10)	2409.0	NM_133665	17261.0	Mm.28184	NM_133665	ENSMUSG00000001419	Mef2d	C80750	myocyte enhancer factor 2D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-57273032-4	chr19	57272927	57273127	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045319)	promoter-TSS (NR_045319)	-933.0	NR_045319	78120.0	Mm.445892	NR_045319		4930449E18Rik	-	RIKEN cDNA 4930449E18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35667579-4	chr17	35667496	35667696	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175137)	promoter-TSS (NM_175137)	-4.0	NM_175137	68915.0	Mm.32002	NM_175137	ENSMUSG00000038838	Vars2	1190004I24Rik|Vars2l|mKIAA1885	valyl-tRNA synthetase 2, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-58094537-3	chr11	58094466	58094666	+	722.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9404.0	NM_026949	69125.0	Mm.28910	NM_026949	ENSMUSG00000020515	Cnot8	1500015I04Rik|1810022F04Rik|AA536816|AU015770|AU043059	CCR4-NOT transcription complex, subunit 8	protein-coding	2.38855053021221	3.35829118126955	3.60036926127181	2.02531184200465	3.46861549747633	1.94025936973469	3.42670725414504	3.0863720333301	0.181658139031167	0.809460288674799	0.998431161219273
Merged-chr12-102356972-2	chr12	102356868	102357068	+	949.5	f0_c57.idr|f1_c57bl6.idr	intron (NM_177620, intron 4 of 9)	intron (NM_177620, intron 4 of 9)	73327.0	NM_001161365	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	4.29177454229438	5.11533803620638	3.06816661799618	4.90512045181575	2.53887300294291	1.75850849471687	2.45049545420682	4.63916612790589	-1.59027742468682	0.183425614637963	0.658116185534174
Merged-chr7-73572760-4	chr7	73572661	73572861	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14366.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-31064378-2	chr6	31064278	31064478	+	595.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1285.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-23871345-2	chr18	23871245	23871445	+	917.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162941, intron 5 of 7)	intron (NM_001162941, intron 5 of 7)	67375.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19701206-4	chr7	19701105	19701305	+	885.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_016871)	TTS (NM_016871)	-2017.0	NM_009696	11816.0	Mm.305152	NM_009696	ENSMUSG00000002985	Apoe	AI255918|Apo-E	apolipoprotein E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-77437165-2	chr8	77437065	77437265	+	740.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030113, intron 3 of 22)	RSINE1|SINE|B4	-79891.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-72345638-1	chr7	72345538	72345738	+	612.0	f0_balb.idr	Intergenic	Intergenic	-39043.0	NM_001024703	244049.0	Mm.217412	NM_001024703	ENSMUSG00000032776	Mctp2	Gm489	multiple C2 domains, transmembrane 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-24152118-3	chr18	24152017	24152217	+	939.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30298.0	NM_172625	225280.0	Mm.258973	NM_172625	ENSMUSG00000047989	Ino80c	D030070L09Rik	INO80 complex subunit C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-60841589-1	chr18	60841489	60841689	+	769.0	f1_c57bl6.idr	intron (NM_011552, intron 3 of 24)	intron (NM_011552, intron 3 of 24)	7375.0	NM_011552	21453.0	Mm.486251	NM_011552	ENSMUSG00000024613	Tcof1	AA408847|AW209012|treacle	treacle ribosome biogenesis factor 1	protein-coding	0.293369388846107	0.287863023146036	-0.0823568591711287	-0.0866126534209112	-0.0926407632379615	-0.0756132744956337	-0.081141703418374	0.739733298120547	0.518529227945583	0.820325090643826	1
Merged-chr10-77545114-4	chr10	77544988	77545188	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008404, intron 3 of 15)	intron (NM_008404, intron 3 of 15)	14740.0	NM_008404	16414.0	Mm.1137	NM_008404	ENSMUSG00000000290	Itgb2	2E6|AI528527|Cd18|LAD|LCAMB|Lfa1|MF17	integrin beta 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-71543896-4	chr6	71543775	71543975	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025783)	promoter-TSS (NM_025783)	23.0	NM_025783	66700.0	Mm.181278	NM_025783	ENSMUSG00000053119	Chmp3	25.1|4921505F14Rik|9130011K15Rik|CGI-49|D6Ertd286e|NEDF|Vps24	charged multivesicular body protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101377839-2	chr15	101377739	101377939	+	725.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7714.0	NM_028770	74127.0	Mm.440055	NM_028770	ENSMUSG00000037185	Krt80	1200016G03Rik|2310041I20Rik|Kb20	keratin 80	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-84126627-4	chr15	84126545	84126745	+	917.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3470.0	NM_029427	75772.0	Mm.159565	NM_029427	ENSMUSG00000018868	Pnpla5	4833426H19Rik|GS2L	patatin-like phospholipase domain containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-32552833-3	chr11	32552699	32552899	+	804.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 1 of 18)	intron (NM_009288, intron 1 of 18)	19533.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	2.13349458814904	2.73863205438046	2.31577085073997	3.13712233911413	2.36485361063978	1.42227218694325	2.33415153895904	1.97947594351428	-1.23840892473718	0.156326529990882	0.612276074046987
Merged-chr17-43580741-4	chr17	43580639	43580839	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013737, intron 1 of 11)	intron (NM_013737, intron 1 of 11)	10770.0	NR_045445	73504.0	Mm.9277	NR_045444	ENSMUSG00000090307	1700071M16Rik	-	RIKEN cDNA 1700071M16 gene	ncRNA	4.74655191304761	3.6266519226977	4.56764634441327	4.30727473209817	3.72385315225622	4.54299926353901	4.73004411132386	3.91404904089718	-0.128970526206751	0.773012168606873	0.998431161219273
Merged-chr1-80757031-4	chr1	80756944	80757144	+	988.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175291, intron 1 of 55)	intron (NM_175291, intron 1 of 55)	1509.0	NM_175291	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-113611397-4	chr13	113611304	113611504	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130796, intron 1 of 1)	intron (NM_130796, intron 1 of 1)	7160.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-85979909-2	chr18	85979809	85980009	+	607.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	-415043.0	NM_001360910	246317.0	Mm.329578	NM_144946	ENSMUSG00000050321	Neto1	AI851453|Btcl1|C130005O10Rik	neuropilin (NRP) and tolloid (TLL)-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-148082491-3	chr4	148082342	148082542	+	891.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009642, intron 2 of 4)	intron (NM_009642, intron 2 of 4)	5622.0	NM_009642	11610.0	Mm.46247	NM_009642	ENSMUSG00000029007	Agtrap	3300002E14Rik|AT1R|Atrap|D4Wsu124e	angiotensin II, type I receptor-associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-109546715-3	chr4	109546613	109546813	+	920.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15416.0	NM_026291	67646.0	Mm.45820	NM_026291	ENSMUSG00000060491	4930522H14Rik	1700007J23Rik	RIKEN cDNA 4930522H14 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126898277-4	chr7	126898198	126898398	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028389)	promoter-TSS (NM_028389)	-20.0	NM_028389	68742.0	Mm.248646	NM_026827	ENSMUSG00000060538	Tmem219	1110032O16Rik|2900045G02Rik|IGFBP-3R	transmembrane protein 219	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191184736-7	chr1	191184616	191184816	+	899.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1383.0	NM_007498	11910.0	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-104110195-4	chr13	104110115	104110315	+	857.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029447)	promoter-TSS (NM_029447)	474.0	NM_144838	218544.0	Mm.44416	NM_144838	ENSMUSG00000042743	Sgtb	C630001O05Rik	small glutamine-rich tetratricopeptide repeat (TPR)-containing, beta	protein-coding	2.98110624092377	2.10343116785993	3.06896348461521	3.61579241087068	3.14045598641115	1.88175209193977	2.23976310336894	2.81479975944953	-0.783091063192662	0.308887452223129	0.809295017856989
Merged-chr18-59058486-2	chr18	59058386	59058586	+	645.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-3895.0	NR_033764	225583.0	Mm.209711	NM_173759	ENSMUSG00000050875	A730017C20Rik	-	RIKEN cDNA A730017C20 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-14599442-2	chr5	14599342	14599542	+	616.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110796, intron 3 of 19)	intron (NM_001110796, intron 3 of 19)	84524.0	NM_001110796	26875.0	Mm.146275	NM_011995	ENSMUSG00000061601	Pclo	Acz|Pico	piccolo (presynaptic cytomatrix protein)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-87723800-3	chr6	87723700	87723900	+	806.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-7069.0	NM_001159697	58229.0	Mm.333229	NM_021418	ENSMUSG00000068263	Efcc1	Ccdc48	EF hand and coiled-coil domain containing 1	protein-coding	-1.22327445034652	-1.19682886798863	-1.03885357347086	-1.21635716081436	-1.22281166189687	-1.19450549402188	-0.744249816958288	-1.21478073274675	1.43410542588014	0.665686470743045	1
Merged-chr10-120163703-4	chr10	120163624	120163824	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359184, intron 8 of 11)	intron (NM_001359184, intron 8 of 11)	37873.0	NM_028679	73914.0	Mm.146194	NM_028679	ENSMUSG00000020227	Irak3	4833428C18Rik|AI563835|IRAK-M	interleukin-1 receptor-associated kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-104337766-2	chr9	104337660	104337860	+	832.0	f0_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019807)	promoter-TSS (NM_019807)	-38.0	NM_207668	56318.0	Mm.19941	NM_019807	ENSMUSG00000032561	Acpp	5'-NT|A030005E02Rik|FRAP|Lap|PAP|Ppal	acid phosphatase, prostate	protein-coding	1.74694381327191	1.14206530467017	1.11358165296118	1.70187314273149	2.54672797614625	1.99266883253067	2.77273669112031	1.71108120245592	2.35352375029706	0.0283441657522102	0.228135040716693
Merged-chr5-103817963-4	chr5	103817853	103818053	+	873.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133919, intron 6 of 19)	intron (NM_133919, intron 6 of 19)	63380.0	NM_001080798	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127705915-2	chr7	127705815	127706015	+	591.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347652, intron 4 of 5)	intron (NM_001347652, intron 4 of 5)	-2572.0	NR_030428	791073.0		NR_030428	ENSMUSG00000076454	Mir762	Mirn762|mir-762|mmu-mir-762	microRNA 762	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70160252-3	chr14	70160150	70160350	+	840.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001004155)	promoter-TSS (NM_001004155)	-748.0	NM_001004155	268759.0	Mm.12148	NM_001004155	ENSMUSG00000044551	9930012K11Rik	-	RIKEN cDNA 9930012K11 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-146056361-2	chr4	146056261	146056461	+	589.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur2|LINE|L1	-11163.0	NR_030771	627585.0	Mm.424988	NM_001039233		Gm13034	-	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-64945841-4	chr17	64945726	64945926	+	897.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-109755.0	NM_030031	78057.0	Mm.109380	NM_030031	ENSMUSG00000024088	4930583I09Rik	-	RIKEN cDNA 4930583I09 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-72771737-2	chr11	72771637	72771837	+	557.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009671, exon 25 of 25)	3' UTR (NM_009671, exon 25 of 25)	24102.0	NM_001024926	192986.0	Mm.194755	NM_001024926	ENSMUSG00000057778	Cyb5d2	9330151E16Rik|Gm2	cytochrome b5 domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-49253190-4	chr7	49253124	49253324	+	998.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175272, intron 1 of 37)	intron (NM_175272, intron 1 of 37)	7035.0	NM_175272	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-3676985-2	chr8	3676885	3677085	+	968.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025701, intron 1 of 1)	intron (NM_025701, intron 1 of 1)	508.0	NM_025701	66682.0	Mm.29090	NM_025701	ENSMUSG00000040236	Trappc5	4021401A16Rik|TRS31	trafficking protein particle complex 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-38714184-3	chr16	38714096	38714296	+	825.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER102b|DNA|hAT-Charlie	-1161.0	NM_020260	12549.0	Mm.370848	NM_020260	ENSMUSG00000022799	Arhgap31	5830477L08Rik|AU041750|Cdgap|D330026I07Rik	Rho GTPase activating protein 31	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44640346-2	chr9	44640246	44640446	+	674.166687	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_181324, exon 14 of 14)	3' UTR (NM_181324, exon 14 of 14)	-32887.0	NM_001277851	58866.0	Mm.45380	NM_021481	ENSMUSG00000032098	Treh	2210412M19Rik	trehalase (brush-border membrane glycoprotein)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-78607967-4	chr1	78607882	78608082	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	-49843.0	NM_001136222	74205.0	Mm.276016	NM_028817	ENSMUSG00000032883	Acsl3	2610510B12Rik|Acs3|C85929|Facl3|Pro2194	acyl-CoA synthetase long-chain family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-82775444-2	chr6	82775344	82775544	+	853.583374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013820)	promoter-TSS (NM_013820)	-990.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-84835373-4	chr16	84835282	84835482	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302216)	promoter-TSS (NM_001302216)	243.0	NM_016755	11957.0	Mm.353	NM_016755	ENSMUSG00000022890	Atp5j	CF6	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72153607-4	chr6	72153514	72153714	+	969.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011375, exon 7 of 7)	exon (NM_011375, exon 7 of 7)	-30417.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-42564151-4	chr19	42564036	42564236	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177464, exon 2 of 7)	exon (NM_177464, exon 2 of 7)	45331.0	NM_177464	52013.0	Mm.254169	NM_177464	ENSMUSG00000025184	R3hcc1l	1700036B12Rik|AI450607|C10orf28|D19Ertd386e|GIDRP86|Gidrp88	R3H domain and coiled-coil containing 1 like	protein-coding	2.01402222067216	1.87321230035403	2.18167326344952	1.89892684767414	1.93122913369057	2.03187792727781	2.1987437094716	1.23058542703883	-0.26683793025668	0.788833583021463	0.998431161219273
Merged-chr2-52673351-3	chr2	52673258	52673458	+	814.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037099, intron 2 of 13)	ORR1F|LTR|ERVL-MaLR	2501.0	NM_001285428	12298.0	Mm.330223	NM_146123	ENSMUSG00000017412	Cacnb4	3110038O15Rik|Cchb4|lh	calcium channel, voltage-dependent, beta 4 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-43784438-2	chr11	43784338	43784538	+	664.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007416, intron 1 of 1)	intron (NM_007416, intron 1 of 1)	-36465.0	NM_133795	66827.0	Mm.271974	NM_133795	ENSMUSG00000041278	Ttc1	4833412C19Rik|C79328|TPR1	tetratricopeptide repeat domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111812074-2	chr12	111811974	111812174	+	689.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_028875, exon 2 of 8)	exon (NM_028875, exon 2 of 8)	1805.0	NM_028875	74335.0	Mm.19082	NM_028875	ENSMUSG00000021287	Xrcc3	-	X-ray repair complementing defective repair in Chinese hamster cells 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32939553-2	chr2	32939453	32939653	+	575.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_199302, intron 16 of 24)	B3|SINE|B2	21702.0	NM_199302	227738.0	Mm.248037	NM_199302	ENSMUSG00000026792	Lrsam1	-	leucine rich repeat and sterile alpha motif containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-72634330-2	chr16	72634230	72634430	+	556.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-28819.0	NM_019413	19876.0	Mm.310772	NM_019413	ENSMUSG00000022883	Robo1	AW494633|AW742721|DUTT1|Gm310	roundabout guidance receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91406972-4	chr16	91406877	91407077	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008349, intron 1 of 6)	intron (NM_008349, intron 1 of 6)	742.0	NM_008349	16155.0	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-50551664-2	chr16	50551564	50551764	+	773.333313	f1_balb.idr|f1_c57bl6.idr	intron (NR_040379, intron 4 of 5)	RSINE1|SINE|B4	23162.0	NR_040379	619312.0	Mm.427671	NR_040379		G730013B05Rik	linc-Cblb|linc1610	RIKEN cDNA G730013B05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-146845087-4	chr5	146844988	146845188	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026864)	promoter-TSS (NM_026864)	17.0	NM_026864	68895.0	Mm.266978	NM_026864	ENSMUSG00000029641	Rasl11a	1110065D03Rik|AI852031	RAS-like, family 11, member A	protein-coding	4.98187322016621	5.0702255441352	4.53405484416552	4.72206108504613	3.89886890279144	3.90291023052625	5.22288300074625	3.96297934858418	-0.577077336746007	0.173384214003147	0.640902961210202
Merged-chr10-80323041-4	chr10	80322936	80323136	+	949.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008793, exon 12 of 15)	exon (NM_008793, exon 12 of 15)	-2488.0	NM_025521	66374.0	Mm.383824	NM_025521	ENSMUSG00000020133	2310011J03Rik	AI452186|AW545358	RIKEN cDNA 2310011J03 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-193191956-3	chr1	193191852	193192052	+	857.06665	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153137, intron 8 of 15)	intron (NM_153137, intron 8 of 15)	9594.0	NM_153137	215243.0	Mm.261259	NM_153137	ENSMUSG00000037318	Traf3ip3	6030423D04Rik|AI115021|T3jam	TRAF3 interacting protein 3	protein-coding	3.63663831076511	3.5653775812693	3.0669837458318	3.14150122027616	2.16916065664899	1.51595973334837	1.46224722677474	2.99342391938169	-2.1344596884143	0.00748386363524834	0.0888587609901158
Merged-chr11-75652591-2	chr11	75652497	75652697	+	888.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080774, intron 1 of 31)	intron (NM_001080774, intron 1 of 31)	447.0	NM_001080774	17913.0	Mm.234502	NM_008659	ENSMUSG00000017774	Myo1c	C80397|MMIb|MYO1E|NMI|mm1beta|myr2	myosin IC	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-127941144-1	chr8	127941044	127941244	+	631.0	f1_balb.idr	Intergenic	Intergenic	337081.0	NR_105822	102465212.0		NR_105822	ENSMUSG00000099326	Mir21c	Gm28013|mmu-mir-21c	microRNA 21c	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165487027-4	chr2	165486928	165487128	+	913.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6286.0	NM_001007581	381406.0	Mm.330785	NM_001007581	ENSMUSG00000039725	Trp53rka	2810408M09Rik	transformation related protein 53 regulating kinase A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-3461136-3	chr8	3461027	3461227	+	840.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026951, intron 3 of 4)	B1_Mur1|SINE|Alu	6521.0	NM_026951	69129.0	Mm.45279	NM_026951	ENSMUSG00000069633	Pex11g	1810022F11Rik|1810049N02Rik|Pex11c|Pex11gamma	peroxisomal biogenesis factor 11 gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-92226430-2	chr9	92226330	92226530	+	637.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23764.0	NM_011636	22038.0	Mm.421956	NM_011636	ENSMUSG00000032369	Plscr1	MmTRA1a|MmTRA1b|Nor1|Tra1|Tra1a|Tra1b|Tras1|Tras2	phospholipid scramblase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-8926367-6	chr10	8926233	8926433	+	898.7777710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-40263.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	3.94868506538913	3.25740710254783	3.05135094423301	1.98558700321579	3.15046362204211	2.14782188290998	3.62010036398014	1.7649383648297	-0.587304904996797	0.460339413067401	0.920832323771703
Merged-chr9-106353979-4	chr9	106353882	106354082	+	958.0166630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14650.0	NM_153459	235584.0	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-33371009-3	chr2	33370905	33371105	+	978.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290570, intron 1 of 16)	(CCA)n|Simple_repeat|Simple_repeat	489.0	NM_001290570	241308.0	Mm.274249	NM_175211	ENSMUSG00000038831	Ralgps1	5830418G11Rik|AI853783|AI854138|RALGEF2|RALGPS1A|RalGEF 2|mKIAA0351	Ral GEF with PH domain and SH3 binding motif 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-38037956-4	chr13	38037832	38038032	+	860.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027724)	promoter-TSS (NM_027724)	943.0	NM_024242	71340.0	Mm.297130	NM_024242	ENSMUSG00000021428	Riok1	3110046C13Rik|5430416A05Rik|Ad034	RIO kinase 1	protein-coding	2.41036346034229	2.36959847547891	3.01562917248326	2.54330057523856	2.12374687318645	2.62842339180957	1.61625897708793	1.32146324052525	-1.31835930005113	0.1467511727696	0.596854430810053
Merged-chr11-103953980-4	chr11	103953873	103954073	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008740)	promoter-TSS (NM_008740)	83.0	NM_008740	18195.0	Mm.260117	NM_008740	ENSMUSG00000034187	Nsf	AI316878|AU020090|AU067812|SKD2	N-ethylmaleimide sensitive fusion protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-64493683-1	chr11	64493583	64493783	+	648.0	f1_c57bl6.idr	intron (NM_178870, intron 1 of 1)	intron (NM_178870, intron 1 of 1)	-57009.0	NR_028445	654805.0	Mm.436132	NR_028445		F930015N05Rik	-	RIKEN cDNA F930015N05 gene	ncRNA	-0.182534527491087	-1.00895016391444	-1.0218572941639	-1.02617529563146	-1.02981053641889	-1.006153134946	-1.01893540279166	-1.02572713344884	-3.09936526392938	0.343406696059999	1
Merged-chr17-74432770-4	chr17	74432654	74432854	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033367, intron 8 of 8)	MLT1A0|LTR|ERVL-MaLR	26354.0	NM_001033367	268973.0	Mm.311884	NM_001033367	ENSMUSG00000039193	Nlrc4	9530011P19Rik|CLAN|CLAN1|CLANA|CLANB|CLANC|CLAND|Card12|IPAF	NLR family, CARD domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-98663795-2	chr15	98663695	98663895	+	778.625	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080981)	promoter-TSS (NM_001080981)	-906.0	NM_001080981	74351.0	Mm.45725	NM_001080981	ENSMUSG00000003360	Ddx23	3110082M05Rik|4921506D17Rik	DEAD (Asp-Glu-Ala-Asp) box polypeptide 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-102429432-2	chr7	102429332	102429532	+	603.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009287, intron 10 of 11)	intron (NM_009287, intron 10 of 11)	-12263.0	NM_009103	20133.0	Mm.197486	NM_009103	ENSMUSG00000030978	Rrm1	RnrM1	ribonucleotide reductase M1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-66885410-2	chr9	66885310	66885510	+	572.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	34295.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55643620-4	chr19	55643500	55643700	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045318, exon 3 of 4)	non-coding (NR_045318, exon 3 of 4)	58604.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69090486-2	chr11	69090386	69090586	+	639.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009497, intron 4 of 4)	intron (NM_009497, intron 4 of 4)	1958.0	NM_009497	22318.0	Mm.28643	NM_009497	ENSMUSG00000020894	Vamp2	Syb-2|Syb2|Vamp-2|sybII	vesicle-associated membrane protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-26565094-1	chr14	26564994	26565194	+	579.0	f0_c57.idr	Intergenic	Intergenic	-8764.0	NM_001285467	211922.0	Mm.260512	NM_145969	ENSMUSG00000040818	Dennd6a	Fam116a	DENN/MADD domain containing 6A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65826784-4	chr9	65826674	65826874	+	772.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172536, intron 1 of 9)	intron (NM_172536, intron 1 of 9)	790.0	NM_172536	214812.0	Mm.139231	NM_172536	ENSMUSG00000040524	Zfp609	9830165N24|BC016271|Znf609|mKIAA0295	zinc finger protein 609	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167953147-4	chr2	167953032	167953232	+	846.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011201, intron 1 of 8)	intron (NM_011201, intron 1 of 8)	20805.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-90899599-2	chr5	90899504	90899704	+	819.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4295.0	NM_009140	20310.0	Mm.4979	NM_009140	ENSMUSG00000058427	Cxcl2	CINC-2a|GROb|Gro2|MIP-2|MIP-2a|Mgsa-b|Mip2|Scyb|Scyb2	chemokine (C-X-C motif) ligand 2	protein-coding	-0.166362935190162	-0.154052360573018	0.00484138118725257	-0.0103109736694083	-0.0318093246252813	0.311842807842854	-0.157217099833396	0.237245813175077	1.85405751366234	0.389732710274411	1
Merged-chr1-134083807-4	chr1	134083699	134083899	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4644.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36466779-2	chr18	36466679	36466879	+	680.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-12284.0	NM_026027	67199.0	Mm.30184	NM_026027	ENSMUSG00000024346	Pfdn1	2700086I23Rik|AA408327|AU044714	prefoldin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53186378-2	chr4	53186278	53186478	+	667.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A1|LTR|ERVL-MaLR	-26483.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-25516241-4	chr14	25516124	25516324	+	892.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 2 of 23)	MIR|SINE|MIR	-18215.0	NR_037236	100526533.0		NR_037236	ENSMUSG00000093081	Mir3075	mir-3075|mmu-mir-3075	microRNA 3075	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-123063068-4	chr10	123062953	123063153	+	909.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163024, intron 1 of 34)	intron (NM_001163024, intron 1 of 34)	13452.0	NM_001163024	67074.0	Mm.169924	NM_153395	ENSMUSG00000034602	Mon2	2610528O22Rik|AW495628|Sf21|mKIAA1040	MON2 homolog, regulator of endosome to Golgi trafficking	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-70012603-4	chr9	70012501	70012701	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039519)	promoter-TSS (NM_001039519)	53.0	NR_104093	235459.0	Mm.293117	NM_199151	ENSMUSG00000033543	Gtf2a2	TFIIA-gamma|TfIIg|Tfiia2	general transcription factor II A, 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-48938413-3	chr7	48938313	48938513	+	758.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-20660.0	NM_001111016	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-22054504-4	chr9	22054401	22054601	+	941.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001310759)	TTS (NM_001310759)	-2478.0	NM_010487	15571.0	Mm.390167	NM_010487	ENSMUSG00000003410	Elavl3	2600009P04Rik|Huc|PLE21|mHuC	ELAV like RNA binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-85042574-2	chr16	85042500	85042700	+	669.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001198823, intron 7 of 17)	intron (NM_001198823, intron 7 of 17)	70389.0	NR_045889	100038614.0	Mm.441351	NR_045889	ENSMUSG00000115518	Gm10791	-	predicted gene 10791	ncRNA	-1.50561175621786	-1.47331375025452	-1.02203377115094	-1.49110398925286	-1.50334449591826	-1.47119716082604	-1.48086985756939	-1.48966786617048	-2.07776723614574	0.550394407909386	1
Merged-chr18-77777754-2	chr18	77777654	77777854	+	580.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007505, intron 3 of 11)	intron (NM_007505, intron 3 of 11)	-3869.0	NM_001357531	225745.0	Mm.39293	NM_146089	ENSMUSG00000041840	Haus1	BC024400|Ccdc5|HEI-C	HAUS augmin-like complex, subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-45599614-4	chr17	45599544	45599744	+	968.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199115)	promoter-TSS (NM_001199115)	-41.0	NM_001199115	63959.0	Mm.29744	NM_022880	ENSMUSG00000023942	Slc29a1	1200014D21Rik|AA407560|ENT1	solute carrier family 29 (nucleoside transporters), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-118944771-2	chr14	118944671	118944871	+	624.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_008929, intron 1 of 11)	intron (NM_008929, intron 1 of 11)	6839.0	NM_008929	100037258.0	Mm.12616	NM_008929	ENSMUSG00000022136	Dnajc3	AA408985|AU067833|Dnajc3a|Dnajc3b|Prkri|mp58|p58|p58IPK	DnaJ heat shock protein family (Hsp40) member C3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-101841694-2	chr6	101841594	101841794	+	605.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	67445.0	NR_027989	207157.0	Mm.57632	NM_177579	ENSMUSG00000052236	Gm9871	0610005I04|EG207157	predicted gene 9871	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-51215607-2	chr3	51215507	51215707	+	581.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8840.0	NM_009834	12457.0	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131293006-2	chr1	131292906	131293106	+	622.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081011, intron 21 of 22)	intron (NM_001081011, intron 21 of 22)	-13443.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-101555875-4	chr6	101555781	101555981	+	742.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-177984.0	NM_018884	55983.0	Mm.321654	NM_018884	ENSMUSG00000035357	Pdzrn3	1110020C07Rik|AI429718|AL023082|LNX3|SEMACAP3|Semcap3	PDZ domain containing RING finger 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-29870306-2	chr2	29870206	29870406	+	808.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_207298, intron 1 of 11)	intron (NM_207298, intron 1 of 11)	812.0	NM_207298	99151.0	Mm.296336	NM_207298	ENSMUSG00000039787	Cercam	2600006K01Rik|AL024097|Ceecam1	cerebral endothelial cell adhesion molecule	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-41268017-4	chr13	41267913	41268113	+	995.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001135577, intron 1 of 1)	intron (NM_001135577, intron 1 of 1)	18169.0	NM_001135577	108934.0	Mm.38578	NM_001135577	ENSMUSG00000091264	Smim13	2900036K02Rik	small integral membrane protein 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-34164873-2	chr1	34164773	34164973	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010081, intron 8 of 23)	intron (NM_010081, intron 8 of 23)	4543.0	NM_010081	13518.0	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-41576049-4	chr10	41575943	41576143	+	846.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045341, exon 3 of 4)	non-coding (NR_045341, exon 3 of 4)	8027.0	NR_045341	70538.0	Mm.399807	NR_045341	ENSMUSG00000091370	5730435O14Rik	-	RIKEN cDNA 5730435O14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-31685650-3	chr17	31685541	31685741	+	804.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7710.0	NM_001278570	12954.0	Mm.1228	NM_013501	ENSMUSG00000024041	Cryaa	Acry-1|Crya-1|Crya1|DAcry-1|lop18	crystallin, alpha A	protein-coding	1.86198730801184	1.71897320733669	1.10327431596086	2.29692305976443	1.78019687000787	1.36742531072608	1.93321536707831	1.47513685859025	-0.494930007942244	0.655430559687404	0.98843657332731
Merged-chr1-88226655-2	chr1	88226555	88226755	+	860.375	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001281466)	promoter-TSS (NM_001281466)	-365.0	NM_001281466	100040766.0	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	Heatr7b1	maestro heat-like repeat family member 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-36843918-3	chr17	36843821	36844021	+	846.9166869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025599, intron 2 of 9)	intron (NM_001025599, intron 2 of 9)	6775.0	NM_001286726	22670.0	Mm.34587	NM_030698	ENSMUSG00000024457	Trim26	AI462198|Zfp173|Zfp1736	tripartite motif-containing 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-144617241-4	chr3	144617129	144617329	+	915.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46802.0	NM_053102	93684.0	Mm.29812	NM_053102	ENSMUSG00000037072	Selenof	9430015P09Rik|Sep15	selenoprotein F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-85610775-4	chr15	85610698	85610898	+	735.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28977.0	NM_009528	22422.0	Mm.306946	NM_009528	ENSMUSG00000022382	Wnt7b	Wnt-7b	wingless-type MMTV integration site family, member 7B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117726105-2	chr10	117726005	117726205	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur2|SINE|Alu	-15347.0	NM_001288586	17246.0	Mm.22670	NM_010786	ENSMUSG00000020184	Mdm2	1700007J15Rik|AA415488|Mdm-2	transformed mouse 3T3 cell double minute 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-42881278-2	chr9	42881178	42881378	+	974.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175481, intron 1 of 20)	L1MB3|LINE|L1	63093.0	NM_175481	110637.0	Mm.370291	NM_175481	ENSMUSG00000032017	Grik4	6330551K01Rik|GluK4|GluRgamma1|KA-1|KA1	glutamate receptor, ionotropic, kainate 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6404666-2	chr19	6404566	6404766	+	666.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_011242, exon 7 of 17)	exon (NM_011242, exon 7 of 17)	4083.0	NM_011242	19395.0	Mm.77017	NM_011242	ENSMUSG00000032946	Rasgrp2	CDC25L|Caldaggef1	RAS, guanyl releasing protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-30787690-4	chr16	30787586	30787786	+	921.7333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	187963.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-117145342-2	chr4	117145242	117145442	+	704.375	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9232.0	NR_028524	100217424.0		NR_028524	ENSMUSG00000065680	Snord38a	MBII-329	small nucleolar RNA, C/D box 38A	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-96437156-1	chr13	96437056	96437256	+	892.0	f0_balb.idr	intron (NM_001042714, intron 7 of 13)	MLT1H1|LTR|ERVL-MaLR	34004.0	NM_001042714	271144.0	Mm.470057	NM_001042714	ENSMUSG00000047117	Ankdd1b	9330128J19Rik	ankyrin repeat and death domain containing 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-106788774-5	chr3	106788782	106788982	+	885.9799800000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007651, intron 1 of 7)	intron (NM_007651, intron 1 of 7)	1267.0	NM_007651	12508.0	Mm.316861	NM_007651	ENSMUSG00000040747	Cd53	AI323659|Ox-44|Tspan25	CD53 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-103183387-4	chr15	103183305	103183505	+	883.62085	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20121.0	NM_027885	71726.0	Mm.254820	NM_027885	ENSMUSG00000036061	Smug1	1200013B09Rik|A930006H09Rik|C85220	single-strand selective monofunctional uracil DNA glycosylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-52454259-2	chr16	52454159	52454359	+	672.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1178.0	NM_001331110	11658.0	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-111966759-3	chr13	111966671	111966871	+	888.644409	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	98835.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	1.69540671731933	0.954432957397358	0.937201414481392	1.57957725068054	2.14682564064135	0.958268526628102	1.76362843822312	1.58835866139014	1.12858124685672	0.39117077777197	0.880464427322676
Merged-chr10-128923536-1	chr10	128923436	128923636	+	1000.0	f0_c57.idr	promoter-TSS (NM_015740)	promoter-TSS (NM_015740)	-12.0	NM_015740	14533.0	Mm.30118	NM_015740	ENSMUSG00000090247	Bloc1s1	AI839753|BLOS1|Gcn5l1	biogenesis of lysosomal organelles complex-1, subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-164793414-2	chr2	164793314	164793514	+	558.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_133924)	TTS (NM_133924)	7393.0	NM_133924	101113.0	Mm.295647	NM_133924	ENSMUSG00000050373	Snx21	5730407K14Rik|AI481716	sorting nexin family member 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-79261567-3	chr15	79261437	79261637	+	665.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177580, exon 9 of 14)	exon (NM_177580, exon 9 of 14)	-6789.0	NM_020516	57274.0	Mm.441697	NM_020516	ENSMUSG00000032988	Slc16a8	Mct3	solute carrier family 16 (monocarboxylic acid transporters), member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-151689735-4	chr1	151689627	151689827	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022018, intron 6 of 13)	intron (NM_022018, intron 6 of 13)	65000.0	NR_151474	102640772.0		NR_151473	ENSMUSG00000100594	2810414N06Rik	-	RIKEN cDNA 2810414N06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-92856453-4	chr8	92856354	92856554	+	965.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357375, intron 1 of 12)	intron (NM_001357375, intron 1 of 12)	1121.0	NM_001357374	270084.0	Mm.21463	NM_173014	ENSMUSG00000033192	Lpcat2	1-AGPAT 11|A330042H22|Aytl1|Aytl1a|lpafat1|lysoPAFAT|lysoPAFAT/LPCAT2	lysophosphatidylcholine acyltransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-66279497-4	chr15	66279407	66279607	+	894.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152923, intron 1 of 14)	intron (NM_152923, intron 1 of 14)	6717.0	NM_152923	110862.0	Mm.255585	NM_152923	ENSMUSG00000056258	Kcnq3	-	potassium voltage-gated channel, subfamily Q, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3948314-2	chr19	3948214	3948414	+	620.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019449, intron 10 of 10)	PB1D9|SINE|Alu	-10494.0	NM_028545	73458.0	Mm.482922	NM_028545	ENSMUSG00000037263	Aldh3b3	1700055N04Rik	aldehyde dehydrogenase 3 family, member B3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30430246-1	chr7	30430146	30430346	+	743.0	f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	6971.0	NM_172142	243910.0	Mm.386878	NM_172142	ENSMUSG00000036931	Nfkbid	I-kappa-B-delta|IkappaBNS|ikB-delta	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	protein-coding	2.24711131376298	1.06825919577728	2.90150572067999	2.28286565352252	0.94516075559232	1.0770182826009	3.44259485990056	1.29264968755501	-0.106312881413638	0.958482840499259	0.998431161219273
Merged-chr6-48602011-4	chr6	48601931	48602131	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	8148.0	NM_001079904	58887.0	Mm.219183	NM_175099	ENSMUSG00000052751	Repin1	AI425994|Ap4|E430037F08Rik|Zfp-464|Zfp464	replication initiator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-87512450-2	chr6	87512350	87512550	+	712.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037727, intron 1 of 10)	L1M5|LINE|L1	-16123.0	NM_175476	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-156939112-3	chr1	156938966	156939166	+	862.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357391, intron 1 of 19)	CpG	321.0	NM_001159966	78255.0	Mm.28376	NM_023884	ENSMUSG00000026594	Ralgps2	1810020P17Rik|2210408F11Rik|4921528G01Rik|9130014M22Rik|AU043409|AW046161	Ral GEF with PH domain and SH3 binding motif 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-58727948-2	chr1	58727848	58728048	+	787.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355056, intron 2 of 8)	intron (NM_001355056, intron 2 of 8)	-2604.0	NM_001293805	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-78914112-2	chr1	78913993	78914193	+	596.0	f0_balb.idr|f1_balb.idr	intron (NR_151519, intron 3 of 3)	Lx8|LINE|L1	97182.0	NM_021342	57814.0	Mm.24386	NM_021342	ENSMUSG00000047330	Kcne4	AW487937|MiRP3	potassium voltage-gated channel, Isk-related subfamily, gene 4	protein-coding	-1.56355737717652	-1.81244775989375	-1.82128546162293	-1.82854501295842	-1.83962066705452	-1.81053259306168	-1.81928479966835	-1.82724555674025	-1.28500227969968	0.715751224811686	1
Merged-chr3-83766405-2	chr3	83766305	83766505	+	770.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009144)	promoter-TSS (NM_009144)	84.0	NM_009144	20319.0	Mm.19155	NM_009144	ENSMUSG00000027996	Sfrp2	AI851596|Sdf5	secreted frizzled-related protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64206848-2	chr5	64206748	64206948	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019636, intron 2 of 19)	MTE2b|LTR|ERVL-MaLR	-23509.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-117417163-4	chr5	117417071	117417271	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001312914, intron 1 of 19)	MTC|LTR|ERVL-MaLR	3169.0	NM_001312914	333050.0	Mm.437947	NM_001034873	ENSMUSG00000061578	Ksr2	-	kinase suppressor of ras 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-25339844-4	chr12	25339739	25339939	+	928.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	210665.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	3.17632815317093	3.77612601993325	1.85111494923902	3.10655011659275	2.4212978104922	4.23132236308954	2.31555323101598	3.02930778990244	0.172674958394699	0.820875778974825	0.998431161219273
Merged-chr6-83914389-4	chr6	83914292	83914492	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008717)	promoter-TSS (NM_008717)	39.0	NM_001355284	18139.0	Mm.132392	NM_008717	ENSMUSG00000030016	Zfp638	AI323587|Np220|Zfml|Znf638|mNP220	zinc finger protein 638	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65376011-2	chr9	65375911	65376111	+	882.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111145, intron 4 of 6)	B2_Mm1a|SINE|B2	14951.0	NM_001111145	208080.0	Mm.291862	NM_001111145	ENSMUSG00000086228	Ubap1l	Gm514	ubiquitin-associated protein 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-75076473-4	chr8	75076330	75076530	+	860.7583619999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17188.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-121379945-3	chr14	121379813	121380013	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145465)	promoter-TSS (NM_145465)	-683.0	NM_145465	223255.0	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	1.73102956777124	1.83215355486	1.00902502230412	1.94397074522943	1.35003337922207	2.5584299990409	1.63299106589851	0.993755010614784	0.315227007401687	0.791483656763551	0.998431161219273
Merged-chr6-15758035-2	chr6	15757935	15758135	+	557.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175088, intron 3 of 4)	L1_Mus3|LINE|L1	37374.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70728449-2	chr11	70728349	70728549	+	809.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_153103, exon 23 of 23)	exon (NM_153103, exon 23 of 23)	22459.0	NR_105890	102465557.0		NR_105890	ENSMUSG00000105932	Mir6925	mmu-mir-6925	microRNA 6925	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-122329786-4	chr7	122329689	122329889	+	946.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316672, intron 2 of 16)	intron (NM_001316672, intron 2 of 16)	40664.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-33977117-2	chr17	33977017	33977217	+	772.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_004446, intron 3 of 5)	B2_Mm1t|SINE|B2	1674.0	NR_004446	630499.0	Mm.440940	NM_001081015		H2-K2	EG630499|Gm7035|H-2K1|H-2K1K|H-2K2|H2-K1	histocompatibility 2, K region locus 2	pseudo	0.303146072364557	1.47053101496141	0.325004196373123	0.316881162678673	0.767866469798557	1.06495608637546	0.545031697446958	0.318308138032669	-0.157426500031678	0.93091591609257	1
Merged-chr10-44634283-2	chr10	44634183	44634383	+	554.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-175535.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-5203413-4	chr16	5203303	5203503	+	915.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013796, exon 2 of 10)	exon (NM_013796, exon 2 of 10)	609.0	NM_013796	27426.0	Mm.215641	NM_013796	ENSMUSG00000023143	Nagpa	AI596180|UCE	N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-155847812-2	chr4	155847712	155847912	+	995.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_010091, exon 1 of 15)	exon (NM_010091, exon 1 of 15)	410.0	NM_001356381	13542.0	Mm.3400	NM_010091	ENSMUSG00000029071	Dvl1	Dvl|mKIAA4029	dishevelled segment polarity protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-120091106-4	chr6	120090994	120091194	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2286.0	NM_016718	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76805076-3	chr15	76804923	76805123	+	785.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198420, intron 1 of 10)	B4|SINE|B4	13147.0	NM_001168288	223666.0	Mm.322931	NM_198420	ENSMUSG00000033697	Arhgap39	9530053N22|AI843066|D15Wsu169e|Kiaa1688|Porf-2	Rho GTPase activating protein 39	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46835770-4	chr8	46835656	46835856	+	839.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008391, intron 6 of 8)	intron (NM_008391, intron 6 of 8)	96011.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-59547649-3	chr4	59547588	59547788	+	819.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144904, intron 1 of 14)	intron (NM_144904, intron 1 of 14)	1676.0	NM_178164	230257.0	Mm.331640	NM_144904	ENSMUSG00000028382	Ptbp3	5830471K22Rik|AA407443|AI462022|AW107884|C86549|Rod1	polypyrimidine tract binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-31320491-2	chr6	31320391	31320591	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_040261, intron 3 of 4)	intron (NR_040261, intron 3 of 4)	78282.0	NR_040300	100503869.0	Mm.370532	NR_040300	ENSMUSG00000086212	Mkln1os	Gm13845	muskelin 1, intracellular mediator containing kelch motifs, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129840254-1	chr4	129840154	129840354	+	939.0	f0_balb.idr	intron (NM_008974, intron 2 of 5)	intron (NM_008974, intron 2 of 5)	19546.0	NM_001164745	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	1.82807660557477	1.7202246589897	2.94422561742056	1.61930193326328	1.84353025752188	1.73254575660636	2.45701756774233	1.62726473154983	-0.508963342575911	0.603499712056279	0.973589491466885
Merged-chr4-106316655-4	chr4	106316548	106316748	+	967.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_183225, exon 1 of 68)	exon (NM_183225, exon 1 of 68)	435.0	NM_183225	329908.0	Mm.234544	NM_183225	ENSMUSG00000028514	Usp24	2700066K03Rik|2810030C21Rik|AI414051|B130021E18|C79851	ubiquitin specific peptidase 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56260964-2	chr17	56260864	56261064	+	638.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010192, exon 1 of 1)	3' UTR (NM_010192, exon 1 of 1)	4171.0	NM_010192	14154.0	Mm.290813	NM_010192	ENSMUSG00000043683	Fem1a	AW611390|Fem1aa	feminization 1 homolog a (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-67188506-4	chr14	67188414	67188614	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44778.0	NM_010095	13592.0	Mm.319947	NM_010095	ENSMUSG00000022053	Ebf2	D14Ggc1e|EBF-2|Mmot1|O/E-3|OE-3	early B cell factor 2	protein-coding	2.91002842610337	2.93146097852824	2.83111981310904	3.94568625850692	3.37953920932145	3.38269217504253	2.72160883068141	2.88034747249205	-0.214881837682425	0.737581231986356	0.998431161219273
Merged-chr13-3771659-4	chr13	3771557	3771757	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32661.0	NM_027416	70405.0	Mm.20079	NM_027416	ENSMUSG00000063130	Calml3	2310068O22Rik|AI326174	calmodulin-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-24791504-4	chr13	24791411	24791611	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	-10146.0	NM_024473	79555.0	Mm.266668	NM_024473	ENSMUSG00000019132	BC005537	8030460C05Rik|C78201	cDNA sequence BC005537	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115101452-2	chr5	115101352	115101552	+	716.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6510.0	NM_001271591	100502825.0	Mm.361657	NM_001271590		Rpl37rt	EyeLinc4|Gm13826	ribosomal protein L37, retrotransposed	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117776107-4	chr10	117776008	117776208	+	967.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134010, intron 11 of 27)	MTC|LTR|ERVL-MaLR	16597.0	NM_134010	103468.0	Mm.12568	NM_134010	ENSMUSG00000052798	Nup107	AW541137|C76801	nucleoporin 107	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-154752223-2	chr2	154752136	154752336	+	733.166626	f0_balb.idr|f0_c57.idr	Intergenic	HAL1b|LINE|L1	-38874.0	NM_001139512	19383.0	Mm.221440	NM_023130	ENSMUSG00000027593	Raly	AI663842|Merc	hnRNP-associated with lethal yellow	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94514040-2	chr10	94513940	94514140	+	897.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172051)	promoter-TSS (NM_172051)	-817.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95754931-4	chr3	95754814	95755014	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163618)	promoter-TSS (NM_001163618)	63.0	NR_151589	71807.0	Mm.271754	NM_027931	ENSMUSG00000028107	Tars2	2610024N01Rik|AI429208|Tarsl1|thrRS	threonyl-tRNA synthetase 2, mitochondrial (putative)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128763732-3	chr2	128763579	128763779	+	852.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 8 of 18)	intron (NM_008587, intron 8 of 18)	-54624.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	0.90265145217653	0.44470021768034	1.01308062065633	0.598317188120261	0.812925960252814	1.07609264794198	0.438744808052577	0.432181400445374	-0.208923625459976	0.902581323961496	1
Merged-chr1-172302549-1	chr1	172302449	172302649	+	548.0	f0_balb.idr	Intergenic	Intergenic	-4485.0	NM_178405	98660.0	Mm.207432	NM_178405	ENSMUSG00000007097	Atp1a2	AW060654|Atpa-3|mKIAA0778	ATPase, Na+/K+ transporting, alpha 2 polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-24598158-2	chr5	24598058	24598258	+	564.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025891, intron 2 of 12)	intron (NM_025891, intron 2 of 12)	3844.0	NM_025891	66993.0	Mm.436539	NM_025891	ENSMUSG00000028949	Smarcd3	1500001J14Rik|2210409C08Rik|BAF60C	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-114697635-2	chr5	114697535	114697735	+	825.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F1|SINE|Alu	-6700.0	NM_019821	56356.0	Mm.275766	NM_019821	ENSMUSG00000011884	Gltp	1110001F24Rik|C76925|C77564	glycolipid transfer protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-16885007-2	chr6	16884907	16885107	+	620.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_031198, intron 1 of 6)	intron (NM_031198, intron 1 of 6)	13434.0	NM_031198	21426.0	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-78455474-2	chr11	78455374	78455574	+	580.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-10227.0	NM_026740	52466.0	Mm.131618	NM_026740	ENSMUSG00000020829	Slc46a1	1110002C08Rik|D11Ertd18e|HCP1|Pcft	solute carrier family 46, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-20735166-2	chr11	20735066	20735266	+	698.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_181411, intron 1 of 8)	RSINE1|SINE|B4	6390.0	NM_001290545	216549.0	Mm.356580	NM_181411	ENSMUSG00000049659	Aftph	-	aftiphilin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31127347-2	chr14	31127247	31127447	+	945.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001308091, intron 1 of 1)	intron (NM_001308091, intron 1 of 1)	1583.0	NM_001308466	66487.0	Mm.379116	NM_001308091	ENSMUSG00000058351	Smim4	2010107H07Rik|Gm41122	small integral membrane protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-25428577-4	chr2	25428466	25428666	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007379)	promoter-TSS (NM_007379)	-108.0	NM_007379	11305.0	Mm.2210	NM_007379	ENSMUSG00000026944	Abca2	AI413825|Abc2|D2H0S1474E|mKIAA1062	ATP-binding cassette, sub-family A (ABC1), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-29319153-2	chr6	29319053	29319253	+	715.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289663)	promoter-TSS (NM_001289663)	13.0	NM_001289664	330277.0	Mm.87624	NM_207258	ENSMUSG00000039742	Fam71f1	GARI-L1|Gm764|NYD-SP18	family with sequence similarity 71, member F1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-85007900-4	chr2	85007784	85007984	+	779.479187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145526, intron 8 of 11)	B2_Mm2|SINE|B2	19669.0	NM_016914	53856.0	Mm.19943	NM_016914	ENSMUSG00000027072	Prg3	MBP2|MBPH	proteoglycan 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-105020960-2	chr5	105020860	105021060	+	630.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029509, intron 5 of 9)	L1_Mus2|LINE|L1	32601.0	NM_029509	76074.0	Mm.458519	NM_029509	ENSMUSG00000034438	Gbp8	5830443L24Rik|mGBP8	guanylate-binding protein 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101300149-2	chr7	101300049	101300249	+	826.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001111111, exon 2 of 18)	exon (NM_001111111, exon 2 of 18)	1939.0	NM_001111111	73683.0	Mm.275744	NM_001111111	ENSMUSG00000047767	Atg16l2	2410118P20Rik	autophagy related 16-like 2 (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-108691582-2	chr5	108691482	108691682	+	588.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MEc|LINE|L1	-2647.0	NM_001164259	116701.0	Mm.35691	NM_054071	ENSMUSG00000008090	Fgfrl1	FGFR5|FGFR5beta|FGFR5gamma	fibroblast growth factor receptor-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-24573439-2	chr12	24573339	24573539	+	769.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161406, intron 1 of 15)	intron (NM_001161406, intron 1 of 15)	1152.0	NM_001161406	195733.0	Mm.263068	NM_145890	ENSMUSG00000020656	Grhl1	LBP-32|MGR|Tcfcp2l2	grainyhead like transcription factor 1	protein-coding	-1.17367364971587	-1.14665061133654	-1.15856004380685	-1.16834280623128	-1.17310571790619	-1.14406978763884	-0.42938571406771	-1.16659169643457	2.89727187181404	0.396361616615464	1
Merged-chr5-139687859-3	chr5	139687773	139687973	+	879.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48460.0	NM_174850	231830.0	Mm.240510	NM_174850	ENSMUSG00000036718	Micall2	A930021H16Rik|JRAB|MICAL-L2|mFLJ00139	MICAL-like 2	protein-coding	1.46936589579943	0.650113011303233	0.636659060676277	0.626086120563859	1.08260725078471	0.653108803367294	1.44741853608179	1.74583273668712	1.51732579053016	0.342820130764547	0.843666606504793
Merged-chr9-118644358-2	chr9	118644258	118644458	+	755.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 4 of 27)	intron (NM_133721, intron 4 of 27)	37649.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	-0.734697168562934	-1.28094420828655	-1.29131886204401	-1.29984091153697	-1.31008363841169	-1.2786959775384	-1.28897026783925	-1.29831546875223	-2.42902550944018	0.482518537989684	1
Merged-chr5-138264016-4	chr5	138263917	138264117	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153161)	promoter-TSS (NM_153161)	-28.0	NR_045821	69004.0	Mm.439868	NR_045821	ENSMUSG00000085227	6330418K02Rik	-	RIKEN cDNA 6330418K02 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-136832451-2	chr6	136832351	136832551	+	863.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039558, intron 1 of 1)	intron (NM_001039558, intron 1 of 1)	2999.0	NM_001039558	654818.0	Mm.386899	NM_001039558	ENSMUSG00000043298	Smco3	C030030A07Rik	single-pass membrane protein with coiled-coil domains 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-23037538-2	chr2	23037438	23037638	+	607.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077190, intron 1 of 10)	intron (NM_001077190, intron 1 of 10)	2703.0	NM_001077192	11308.0	Mm.205647	NM_007380	ENSMUSG00000058835	Abi1	E3B1|NAP1|Ssh3bp1|abi-1	abl-interactor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97486994-3	chr6	97486899	97487099	+	909.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	821.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-73234710-4	chr14	73234615	73234815	+	958.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009029, intron 17 of 26)	intron (NM_009029, intron 17 of 26)	-3176.0	NM_175116	67168.0	Mm.390681	NM_175116	ENSMUSG00000033446	Lpar6	2610302I02Rik|P2ry5|P2y5	lysophosphatidic acid receptor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21601291-4	chr9	21601187	21601387	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7042.0	NR_003372	666043.0	Mm.247282	NR_003372		Gm7904	EG666043	predicted gene 7904	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-134924586-4	chr4	134924524	134924724	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023665, intron 2 of 4)	intron (NM_023665, intron 2 of 4)	999.0	NM_023665	27981.0	Mm.331964	NM_023665	ENSMUSG00000037266	Rsrp1	2700043I21Rik|D4Ucla2|D4Wsu53e	arginine/serine rich protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-53794089-4	chr11	53793973	53794173	+	997.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033332, intron 3 of 3)	intron (NR_033332, intron 3 of 3)	23600.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-84806629-3	chr18	84806510	84806710	+	688.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44728.0	NM_025797	109672.0	Mm.31018	NM_025797	ENSMUSG00000024646	Cyb5a	0610009N12Rik|Cyb5	cytochrome b5 type A (microsomal)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-176828184-4	chr1	176828109	176828309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357390, intron 3 of 18)	intron (NM_001357390, intron 3 of 18)	7924.0	NR_037996	15365.0	Mm.441435	NR_037996		Hmga2-ps1	EG666235|Gm7996|Hmgic-ps1|[y]i-c	high mobility group AT-hook 2, pseudogene 1	pseudo	5.30330828313974	5.2484105732117	4.40660105736514	5.06925454447771	5.1936785408923	4.90967251419541	5.29694448843192	5.15658918896527	0.113005104622152	0.725475731512704	0.998431161219273
Merged-chr8-94128024-2	chr8	94127924	94128124	+	657.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9180.0	NM_008631	17752.0	Mm.1536	NM_008631	ENSMUSG00000031757	Mt4	MT-IV	metallothionein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-89544614-2	chr13	89544512	89544712	+	624.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013500, intron 1 of 4)	L1_Mus4|LINE|L1	3976.0	NM_013500	12950.0	Mm.266790	NM_013500	ENSMUSG00000021613	Hapln1	BB099155|CLP|Crtl1|Crtl1l|LP|LP-1	hyaluronan and proteoglycan link protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-55957351-3	chr17	55957249	55957449	+	775.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_015766)	TTS (NM_015766)	-1838.0	NM_028381	72886.0	Mm.22796	NM_028381	ENSMUSG00000003208	Ccdc94	2900016D05Rik|AI413813	coiled-coil domain containing 94	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-154034315-4	chr1	154034209	154034409	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	134380.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-24814160-4	chr5	24814064	24814264	+	992.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053075, intron 2 of 7)	intron (NM_053075, intron 2 of 7)	28197.0	NM_053075	19744.0	Mm.319175	NM_053075	ENSMUSG00000028945	Rheb	Rheb1	Ras homolog enriched in brain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-93701696-3	chr14	93701594	93701794	+	967.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081377, intron 2 of 4)	intron (NM_001081377, intron 2 of 4)	188975.0	NM_001271800	211712.0	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding	1.59962031527608	1.51866232639587	0.55593826587569	0.546216546128027	1.11448722182776	0.998613452373118	0.558690758169323	0.547925600743957	-1.39006922050381	0.403774766222412	0.888897182593852
Merged-chr7-102106961-2	chr7	102106861	102107061	+	552.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_009710, exon 3 of 5)	exon (NM_009710, exon 3 of 5)	5218.0	NM_009710	11870.0	Mm.261071	NM_009710	ENSMUSG00000030996	Art1	ADPRT|ARTC1|Yac-1	ADP-ribosyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-58528805-2	chr15	58528705	58528905	+	976.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	113337.0	NM_145959	210998.0	Mm.3224	NM_145959	ENSMUSG00000037119	Fam91a1	AV220772|BC033609|D15Ertd621e|SKIN|mKIAA0493	family with sequence similarity 91, member A1	protein-coding	-0.348761317293124	-0.332181781591601	0.162651037677275	-0.341761546048314	-0.347716004787272	-0.330970988643486	0.595197879220607	-0.341028596127301	1.27258897699637	0.621367506938642	1
Merged-chr3-133091824-4	chr3	133091714	133091914	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027927)	promoter-TSS (NM_027927)	11.0	NM_026231	67553.0	Mm.304899	NM_026231	ENSMUSG00000028018	Gstcd	4933434L15Rik	glutathione S-transferase, C-terminal domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-45267560-4	chr13	45267463	45267663	+	984.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3b|LINE|CR1	-122179.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	4.49911058938684	4.0106357000253	4.15747813031546	4.78648611895029	4.53262122336935	4.26054658516926	3.82460664165897	4.69746475965233	-0.0396416960131437	0.923736373451056	0.998431161219273
Merged-chr15-68258164-4	chr15	68258055	68258255	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152182, intron 1 of 13)	intron (NR_152182, intron 1 of 13)	701.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-180678830-4	chr2	180678749	180678949	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_111965, intron 5 of 12)	intron (NR_111965, intron 5 of 12)	13199.0	NR_111965	23856.0	Mm.253836	NM_011805	ENSMUSG00000038914	Dido1	6720461J16Rik|D130048F08Rik|DATF-1|DIO-1|Datf1|dido	death inducer-obliterator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105854977-4	chr8	105854877	105855077	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021513)	promoter-TSS (NM_021513)	-126.0	NM_021513	59016.0	Mm.286598	NM_021513	ENSMUSG00000036442	Thap11	2810036E22Rik|AB041579|CTG-B43a|CTG-B45d|Ronin	THAP domain containing 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-43867604-2	chr2	43867504	43867704	+	796.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301831, intron 5 of 14)	intron (NM_001301831, intron 5 of 14)	118780.0	NM_001301831	76117.0	Mm.217350	NM_153820	ENSMUSG00000049744	Arhgap15	5830480G12Rik	Rho GTPase activating protein 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-32252478-3	chr1	32252377	32252577	+	861.333374	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133235, intron 2 of 8)	(CAAAA)n|Simple_repeat|Simple_repeat	79755.0	NM_133235	170771.0	Mm.336594	NM_133235	ENSMUSG00000026058	Khdrbs2	6330586C16Rik|Slim1|Slm-1|Slm1|TG-RP135|Tg(LRRK2*R1441G)135Cjli|mSLM-1	KH domain containing, RNA binding, signal transduction associated 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-58233902-3	chr9	58233790	58233990	+	759.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008884, intron 3 of 7)	intron (NM_008884, intron 3 of 7)	12740.0	NR_105806	102466639.0		NR_105806	ENSMUSG00000098886	Mir6385	Gm28021|mmu-mir-6385	microRNA 6385	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-98645527-2	chr15	98645427	98645627	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001044741)	TTS (NM_001044741)	10760.0	NM_001286226	12297.0	Mm.3544	NM_007581	ENSMUSG00000003352	Cacnb3	Beta3|CAB3|Ca(v)beta3|Cchb3	calcium channel, voltage-dependent, beta 3 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-77618104-2	chr8	77618004	77618204	+	579.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6068.0	NR_045467	67357.0	Mm.71129	NR_045467	ENSMUSG00000086781	1700092C02Rik	-	RIKEN cDNA 1700092C02 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-75836228-4	chr10	75836116	75836316	+	888.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-1335.0	NM_010361	14872.0	Mm.24118	NM_010361	ENSMUSG00000033318	Gstt2	AI266894|Yrs|mGSTT2	glutathione S-transferase, theta 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-112530002-4	chr13	112529872	112530072	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139299, intron 14 of 16)	intron (NM_139299, intron 14 of 16)	50690.0	NM_139299	218624.0	Mm.380801	NM_139299	ENSMUSG00000050377	Il31ra	CRL3|GLM-R|GPL|Glmr|NR10	interleukin 31 receptor A	protein-coding	4.75440043879317	5.32454847692212	3.67510967125014	5.1675168230048	4.49240892642769	4.53289551225375	5.29898302164965	4.70247466292761	-0.0779335538954541	0.849211179909229	0.998431161219273
Merged-chr10-16652591-4	chr10	16652491	16652691	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC|LINE|L1	443191.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120760060-4	chr8	120759971	120760171	+	921.3250119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21432.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-93772207-4	chr13	93772107	93772307	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009712, intron 1 of 7)	intron (NM_009712, intron 1 of 7)	528.0	NM_009712	11881.0	Mm.300178	NM_009712	ENSMUSG00000042082	Arsb	1110007C02Rik|AI480648|As-1|As-1r|As-1s|As-1t|As1|As1-r|As1-s|As1-t|Asr-1|Ast-1	arylsulfatase B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31172159-1	chr14	31172059	31172259	+	558.0	f0_balb.idr	exon (NM_022656, exon 21 of 21)	exon (NM_022656, exon 21 of 21)	-3518.0	NM_138672	192187.0	Mm.220821	NM_138672	ENSMUSG00000042286	Stab1	FEEL-1|FELE-1|MFEEL-1|MS-1|STAB-1|mKIAA0246	stabilin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-116598233-4	chr3	116598181	116598381	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030016, intron 1 of 11)	intron (NM_030016, intron 1 of 11)	3323.0	NM_001289571	72776.0	Mm.440836	NM_028349	ENSMUSG00000027959	Sass6	2810453L12Rik	SAS-6 centriolar assembly protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-73800057-3	chr18	73799965	73800165	+	776.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145494, intron 3 of 15)	intron (NM_145494, intron 3 of 15)	15327.0	NM_145494	107029.0	Mm.36817	NM_145494	ENSMUSG00000024556	Me2	AW120568|D030040L20Rik|NAD-ME	malic enzyme 2, NAD(+)-dependent, mitochondrial	protein-coding	2.69532062521904	2.81921460756508	2.72454038540263	1.48737269549834	2.79958368272606	3.13291713997375	2.94350923713404	2.42959594105176	0.616946054639725	0.432066540322028	0.904679012727573
Merged-chr9-113659269-2	chr9	113659169	113659369	+	746.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164678, intron 15 of 17)	RLTR17B_Mm|LTR|ERVK	48990.0	NM_001164678	18571.0	Mm.29816	NM_011052	ENSMUSG00000032504	Pdcd6ip	AI480591|AW544830|Aip1|Alix|C76364|Eig2|mKIAA1375	programmed cell death 6 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-59464627-3	chr4	59464617	59464817	+	916.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-26084.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-24281841-4	chr19	24281745	24281945	+	971.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1259.0	NM_008044	14297.0	Mm.7319	NM_008044	ENSMUSG00000059363	Fxn	FA|FARR|Frda|X25	frataxin	protein-coding	3.7441322330464	4.27525210218633	3.86231845829119	3.3967699492981	3.07140052904621	3.88008798840537	2.99676490015819	3.13103137281669	-0.811054816046531	0.133626992545546	0.571352970272745
Merged-chr8-13501397-4	chr8	13501292	13501492	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19C|LTR|ERVK	-6857.0	NM_019521	14456.0	Mm.3982	NM_019521	ENSMUSG00000031451	Gas6	Gas-6	growth arrest specific 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-46144667-4	chr6	46144592	46144792	+	972.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004357, intron 8 of 23)	A-rich|Low_complexity|Low_complexity	1084631.0	NM_001004357	66797.0	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6249703-2	chr19	6249603	6249803	+	552.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_194348, intron 11 of 39)	intron (NM_194348, intron 11 of 39)	8035.0	NM_194348	329015.0	Mm.277384	NM_194348	ENSMUSG00000024773	Atg2a	1810013C15Rik|A830054M12|BC023754|mKIAA0404	autophagy related 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-53540224-2	chr9	53540124	53540324	+	664.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081152, intron 1 of 17)	intron (NM_001081152, intron 1 of 17)	3177.0	NM_001081152	244879.0	Mm.116713	NM_001081152	ENSMUSG00000033054	Npat	6820401K01|AI427561|BB112559	nuclear protein in the AT region	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-35691536-2	chr5	35691436	35691636	+	623.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11756.0	NM_030127	78558.0	Mm.274255	NM_030127	ENSMUSG00000029096	Htra3	2210021K23Rik|9530081K03Rik|Prsp|Tasp	HtrA serine peptidase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115319848-4	chr5	115319747	115319947	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_131932, exon 2 of 2)	non-coding (NR_131932, exon 2 of 2)	-7330.0	NM_025573	108014.0	Mm.287826	NM_025573	ENSMUSG00000029538	Srsf9	25kDa|2610029M16Rik|SRp30c|Sfrs9	serine/arginine-rich splicing factor 9	protein-coding	-1.53624506061781	-1.50498120743042	-1.36567403739569	-1.52220181915623	-1.2509067664531	-1.50293238927041	-1.51229537506134	-1.5208116794288	0.640753741356348	0.855918148133185	1
Merged-chr2-93457916-4	chr2	93457806	93458006	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040532, intron 2 of 4)	intron (NR_040532, intron 2 of 4)	3945.0	NM_001271461	12521.0	Mm.4261	NM_007656	ENSMUSG00000027215	Cd82	AA682076|AL023070|C33|IA4|Kai1|Tspan27	CD82 antigen	protein-coding	1.16719847772132	2.06143577754546	1.78794231498016	2.08610225099256	3.04503229279785	3.06096032867122	1.56690283237409	3.41621648282746	2.3552248556826	0.0106870069393001	0.114280489534513
Merged-chr5-113783863-4	chr5	113783761	113783961	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11049.0	NM_025526	66383.0	Mm.29497	NM_025526	ENSMUSG00000025825	Iscu	2310020H20Rik|AA407971|Nifu|Nifun	iron-sulfur cluster assembly enzyme	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-86974833-3	chr12	86974783	86974983	+	847.3666380000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13793.0	NM_001080943	238331.0	Mm.185890	NM_001080943	ENSMUSG00000048483	Zdhhc22	Gm262	zinc finger, DHHC-type containing 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-49085037-4	chr11	49084932	49085132	+	923.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271677, intron 1 of 2)	intron (NM_001271677, intron 1 of 2)	-1985.0	NM_001271676	15953.0	Mm.24769	NM_008330	ENSMUSG00000078920	Ifi47	47kDa|IRG-47|Ifggc1|Igrd|Iigp4|Iipg4|Irgd	interferon gamma inducible protein 47	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-67357317-2	chr17	67357217	67357417	+	980.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2826.0	NM_001357625	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122398026-4	chr5	122397943	122398143	+	992.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019824, intron 2 of 6)	intron (NM_019824, intron 2 of 6)	6165.0	NM_019824	56378.0	Mm.275942	NM_019824	ENSMUSG00000029465	Arpc3	1110006A04Rik|p21-ARC|p21-Ar|p21Arc	actin related protein 2/3 complex, subunit 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-94676704-3	chr11	94676625	94676825	+	767.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145828, intron 1 of 10)	intron (NM_145828, intron 1 of 10)	768.0	NM_145828	217119.0	Mm.100638	NM_145828	ENSMUSG00000020868	Xylt2	E030002B02Rik|XT-II|XT2|xylT-II	xylosyltransferase II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-57222235-2	chr16	57222135	57222335	+	713.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026254, intron 1 of 17)	L1MB7|LINE|L1	9231.0	NM_026254	67581.0	Mm.257819	NM_026254	ENSMUSG00000022749	Tbc1d23	4930451A13Rik|AU015720|AU043671|AU043778|D030022P07Rik|W51689	TBC1 domain family, member 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-43102203-4	chr5	43102100	43102300	+	971.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-131263.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-10834312-3	chr8	10834214	10834414	+	601.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TTG)n|Simple_repeat|Simple_repeat	48140.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-7851943-4	chr14	7851837	7852037	+	771.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081427, intron 1 of 45)	intron (NM_001081427, intron 1 of 45)	33980.0	NM_134080	286940.0	Mm.489652	NM_134080	ENSMUSG00000025278	Flnb	AL024016|Fln-b	filamin, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-154294934-2	chr2	154294834	154295034	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPEY4_LTR|LTR|ERVK	-12310.0	NM_001025574	433492.0	Mm.330682	NM_001025574	ENSMUSG00000067996	Bpifb9b	5430413K10Rik|AI413838	BPI fold containing family B, member 9B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-145632427-2	chr6	145632327	145632527	+	677.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16464.0	NM_009449	22147.0	Mm.270295	NM_009449	ENSMUSG00000067338	Tuba3b	M[a]7|Tuba7	tubulin, alpha 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114229965-4	chr11	114229882	114230082	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L4_A_Mam|LINE|RTE-X	31724.0	NR_045930	73536.0	Mm.54275	NR_045930	ENSMUSG00000078600	1700092K14Rik	-	RIKEN cDNA 1700092K14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-112757051-3	chr13	112756949	112757149	+	594.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43728.0	NM_008903	19012.0	Mm.291029	NM_008247	ENSMUSG00000021759	Plpp1	Hic53|Hpic53|LPP-1|LPP1|PAP-2a|PAP2-alpha|PAP2a|Ppap2a|mPAP	phospholipid phosphatase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97315713-4	chr11	97315595	97315795	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025927)	promoter-TSS (NM_025927)	-21.0	NM_025927	67036.0	Mm.5381	NM_025927	ENSMUSG00000018882	Mrpl45	2600005P05Rik|AU043542|R75241	mitochondrial ribosomal protein L45	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-30777916-4	chr10	30777831	30778031	+	912.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358842, intron 1 of 14)	intron (NM_001358842, intron 1 of 14)	25395.0	NM_001358841	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28192853-3	chr17	28192744	28192944	+	947.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357995, intron 2 of 13)	intron (NM_001357995, intron 2 of 13)	-14934.0	NM_027185	23853.0	Mm.204731	NM_027185	ENSMUSG00000002257	Def6	2410003F05Rik|6430538D02Rik|AV094905|Ibp|Slat|Slat2|Slat6	differentially expressed in FDCP 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-32588298-1	chr11	32588198	32588398	+	1000.0	f1_balb.idr	intron (NM_009288, intron 5 of 18)	intron (NM_009288, intron 5 of 18)	-54257.0	NM_001271348	103583.0	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-24904267-4	chr7	24904172	24904372	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001130152)	promoter-TSS (NM_001130152)	-74.0	NM_001130152	16801.0	Mm.3181	NM_008488	ENSMUSG00000040940	Arhgef1	Lbcl2|Lsc	Rho guanine nucleotide exchange factor (GEF) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-110727253-2	chr7	110727153	110727353	+	724.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40953.0	NM_001276301	11717.0	Mm.3238	NM_009667	ENSMUSG00000005686	Ampd3	-	adenosine monophosphate deaminase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-24114689-2	chr16	24114589	24114789	+	668.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31999.0	NR_155457	108168278.0	Mm.417246	NR_155457		Gm46545	-	predicted gene, 46545	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-95534133-3	chr8	95534028	95534228	+	633.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172914)	promoter-TSS (NM_172914)	28.0	NM_172914	244608.0	Mm.248902	NM_172914	ENSMUSG00000036598	Ccdc113	4933409I22|BC060957	coiled-coil domain containing 113	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107589630-2	chr9	107589529	107589729	+	628.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025903, intron 1 of 11)	B1_Mur4|SINE|Alu	1911.0	NM_025903	15983.0	Mm.215335	NM_025903	ENSMUSG00000010048	Ifrd2	1810034A24Rik|AA470234|AI838527|SKMc15	interferon-related developmental regulator 2	protein-coding	1.42011692778052	2.94616459867451	1.37866162621242	0.832601964922879	1.05063921124421	2.62161248978724	1.3920129050063	0.837072320923757	-0.530404280054589	0.670688558106405	0.99359666617512
Merged-chr11-77802282-1	chr11	77802182	77802382	+	558.333313	f0_balb.idr	intron (NM_001291214, intron 1 of 38)	intron (NM_001291214, intron 1 of 38)	984.0	NM_001291215	360013.0	Mm.341248	NM_011586	ENSMUSG00000000631	Myo18a	MAJN|MyoPDZ|MysPDZ|SP-R210	myosin XVIIIA	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114796191-2	chr11	114796091	114796291	+	988.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028055)	promoter-TSS (NM_028055)	-299.0	NM_028055	72014.0	Mm.38347	NM_028055	ENSMUSG00000000202	Btbd17	1500005I02Rik|Tango10a	BTB (POZ) domain containing 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-14631769-4	chr2	14631633	14631833	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023116, intron 2 of 13)	intron (NM_023116, intron 2 of 13)	27427.0	NM_023116	12296.0	Mm.313930	NM_023116	ENSMUSG00000057914	Cacnb2	AW060387|CAB2|Cavbeta2|Cchb2	calcium channel, voltage-dependent, beta 2 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-25010357-2	chr16	25010257	25010457	+	574.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6B|LTR|ERVK	-49282.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-6457331-2	chr15	6457231	6457431	+	565.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013485, intron 1 of 10)	intron (NM_013485, intron 1 of 10)	11998.0	NM_013485	12279.0	Mm.29095	NM_013485	ENSMUSG00000022149	C9	-	complement component 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-32541486-4	chr11	32541378	32541578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 1 of 18)	MLT1A0|LTR|ERVL-MaLR	8212.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	3.9687385864655	4.45899469369633	3.89013452466194	4.34170335492775	3.49085688204104	3.11726197789792	2.70783621843084	2.9043946943246	-1.60096088614188	0.00194610784047221	0.0326412887278457
Merged-chr4-138319711-3	chr4	138319611	138319811	+	873.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026880, intron 3 of 7)	intron (NM_026880, intron 3 of 7)	-3511.0	NR_105986	102466788.0		NR_105986	ENSMUSG00000099200	Mir7019	Gm27947|mmu-mir-7019	microRNA 7019	ncRNA	3.58253338266224	4.37813633785537	2.79973617677179	3.65473641186994	3.31099458169128	2.43999553966445	1.89969418202755	2.5926707054668	-1.67862218286899	0.0138049788186436	0.137188406294383
Merged-chr19-5932840-2	chr19	5932740	5932940	+	868.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-8024.0	NM_026772	104252.0	Mm.491103	NM_026772	ENSMUSG00000045664	Cdc42ep2	1110008C05Rik|Borg1|Cep2|D19Bwg1013e	CDC42 effector protein (Rho GTPase binding) 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-34255936-2	chr13	34255836	34256036	+	602.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033167, intron 3 of 10)	intron (NM_001033167, intron 3 of 10)	89246.0	NM_001033167	73102.0	Mm.23932	NM_001033167	ENSMUSG00000038267	Slc22a23	3110004L20Rik	solute carrier family 22, member 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-101926172-2	chr5	101926072	101926272	+	727.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 18 of 66)	intron (NM_172882, intron 18 of 66)	143749.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80215311-4	chr10	80215195	80215395	+	991.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 1 of 4)	intron (NR_038088, intron 1 of 4)	-11303.0	NM_023431	68114.0	Mm.273418	NM_023431	ENSMUSG00000020156	Mum1	2610019J09|9430059D04Rik|UBE-1C2	melanoma associated antigen (mutated) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30603982-2	chr2	30603882	30604082	+	966.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_030137, intron 1 of 1)	intron (NM_030137, intron 1 of 1)	8938.0	NM_030137	78617.0	Mm.40413	NM_030137	ENSMUSG00000047363	Cstad	9530039B02Rik	CSA-conditional, T cell activation-dependent protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-31221674-2	chr5	31221574	31221774	+	933.083374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1129.0	NM_008014	14208.0	Mm.14501	NM_008014	ENSMUSG00000029147	Ppm1g	AI385652|Fin13	protein phosphatase 1G (formerly 2C), magnesium-dependent, gamma isoform	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-84283743-2	chr1	84283643	84283843	+	557.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001003948, intron 1 of 2)	intron (NM_001003948, intron 1 of 2)	902.0	NM_001003948	98496.0	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4|P-CLI1	phosphotyrosine interaction domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-130283217-4	chr5	130283109	130283309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_153350, exon 9 of 16)	non-coding (NR_153350, exon 9 of 16)	26172.0	NM_001015876	100929.0	Mm.271296	NM_178897	ENSMUSG00000056310	Tyw1	AW125391|Rsafd1	tRNA-yW synthesizing protein 1 homolog (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46871272-1	chr8	46871172	46871372	+	551.0	f0_balb.idr	Intergenic	Arthur1B|DNA|hAT-Tip100	-115615.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-20494715-2	chr13	20494615	20494815	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198093, intron 1 of 6)	intron (NM_198093, intron 1 of 6)	21725.0	NM_198093	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-122617213-4	chr10	122617099	122617299	+	949.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31140.0	NR_105839	102465223.0		NR_105839	ENSMUSG00000098522	Mir6412	Gm27364|mmu-mir-6412	microRNA 6412	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-129238432-4	chr6	129238345	129238545	+	842.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040265)	promoter-TSS (NR_040265)	37.0	NR_040266	76432.0	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-13584694-3	chr9	13584574	13584774	+	940.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35315.0	NM_001013813	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135890068-4	chr4	135889958	135890158	+	941.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5131.0	NM_009924	12802.0	Mm.297251	NM_009924	ENSMUSG00000062585	Cnr2	CB-2|CB2|CB2-R	cannabinoid receptor 2 (macrophage)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-90274698-4	chr9	90274583	90274783	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3914.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-35348930-3	chr10	35348824	35349024	+	947.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	865524.0	NM_010237	14302.0	Mm.332432	NM_010237	ENSMUSG00000019779	Frk	BSK|BSK/IYK|C85044|GTK|RAK	fyn-related kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106957572-4	chr11	106957462	106957662	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36847.0	NM_025481	66313.0	Mm.340955	NM_025481	ENSMUSG00000018363	Smurf2	2810411E22Rik|AI558114|AI649275	SMAD specific E3 ubiquitin protein ligase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-74704148-2	chr5	74704048	74704248	+	881.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1245.0	NM_001159577	16924.0	Mm.440403	NM_010727	ENSMUSG00000029228	Lnx1	Lnx	ligand of numb-protein X 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-60731790-2	chr13	60731690	60731890	+	684.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 17 of 26)	intron (NM_134062, intron 17 of 26)	54574.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-47190158-4	chr13	47190074	47190274	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146042, intron 1 of 7)	intron (NM_146042, intron 1 of 7)	-3829.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-57491679-2	chr8	57491579	57491779	+	819.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_126553, intron 2 of 3)	ID4_|SINE|ID	3716.0	NR_126555	78353.0	Mm.426240	NR_126553	ENSMUSG00000096917	2500002B13Rik	-	RIKEN cDNA 2500002B13 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-51276221-4	chr3	51276129	51276329	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_073429)	promoter-TSS (NR_073429)	-532.0	NR_073429	67746.0	Mm.441177	NR_073429	ENSMUSG00000087440	4930577N17Rik	-	RIKEN cDNA 4930577N17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-83433456-1	chr15	83433356	83433556	+	571.0	f0_balb.idr	promoter-TSS (NM_011862)	promoter-TSS (NM_011862)	-606.0	NM_001159510	23970.0	Mm.23978	NM_011862	ENSMUSG00000016664	Pacsin2	AI197433	protein kinase C and casein kinase substrate in neurons 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-142096884-2	chr7	142096784	142096984	+	578.625	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1600.0	NM_008748	18218.0	Mm.39725	NM_008748	ENSMUSG00000037887	Dusp8	5530400B01Rik|AI593498|Nttp1	dual specificity phosphatase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-61648598-4	chr10	61648512	61648712	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026438)	promoter-TSS (NM_026438)	-9.0	NM_026438	67895.0	Mm.28897	NM_026438	ENSMUSG00000020089	Ppa1	2010317E03Rik|Pyp	pyrophosphatase (inorganic) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-25864851-1	chr12	25864751	25864951	+	603.0	f1_balb.idr	Intergenic	Intergenic	345654.0	NR_131149	629481.0	Mm.390460	NR_131149	ENSMUSG00000113550	Gm29687	-	predicted gene, 29687	ncRNA	-1.21575676353841	-1.1882771616738	-1.1995328574972	-1.2087786211754	-1.21524488394202	-1.18583800543462	-1.19698481468061	-0.540595393272118	2.74438217975722	0.425994238664144	1
Merged-chr11-17007332-14	chr11	17007243	17007443	+	897.535706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019549, intron 1 of 9)	intron (NM_019549, intron 1 of 9)	1375.0	NM_019549	56193.0	Mm.98232	NM_019549	ENSMUSG00000020120	Plek	2010300B13Rik	pleckstrin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-146524206-2	chr4	146524106	146524306	+	830.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_045468, intron 2 of 2)	RMER17B2|LTR|ERVK	9286.0	NM_001243139	100041433.0	Mm.441741	NM_001243138	ENSMUSG00000056300	Zfp981	Gm13247	zinc finger protein 981	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32360968-4	chr2	32360881	32361081	+	897.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-2029.0	NM_001252538	68379.0	Mm.170508	NM_028412	ENSMUSG00000039205	Ciz1	0610038H21Rik|2900056O04Rik|LSFR1|ZNF356	CDKN1A interacting zinc finger protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-128410660-2	chr8	128410560	128410760	+	654.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358959, intron 2 of 16)	intron (NM_001358959, intron 2 of 16)	51419.0	NR_035436	100316680.0		NR_035436	ENSMUSG00000084523	Mir1903	Mirn1903|mmu-mir-1903	microRNA 1903	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-72939459-2	chr10	72939359	72939559	+	606.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	147246.0	NR_040646	327768.0	Mm.417745	NR_040646	ENSMUSG00000111994	A330049N07Rik	-	RIKEN cDNA A330049N07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-5256632-2	chr6	5256532	5256732	+	708.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173006)	promoter-TSS (NM_173006)	-399.0	NM_173006	269823.0	Mm.9122	NM_173006	ENSMUSG00000029759	Pon3	2810004E20|AI786302	paraoxonase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83604828-4	chr11	83604720	83604920	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_036453, intron 2 of 8)	intron (NR_036453, intron 2 of 8)	-11733.0	NM_009139	20305.0	Mm.137	NM_009139	ENSMUSG00000018927	Ccl6	MRP-1|Scya6|c10	chemokine (C-C motif) ligand 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-137118188-2	chr5	137118137	137118337	+	812.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2030.0	NM_201373	384309.0	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	-1.31349849087795	-1.28274354783242	-1.29349452597086	-1.3023256995151	-1.3130151546297	-1.28041376602105	-0.694015972326031	-1.30074492367298	2.57396649482007	0.456321314346772	1
Merged-chr13-54295915-4	chr13	54295867	54296067	+	940.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-75382.0	NM_009946	12890.0	Mm.268902	NM_009946	ENSMUSG00000025867	Cplx2	921-L|AI413745|AW492120|Gm34843	complexin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-79619213-4	chr2	79619116	79619316	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16209.0	NM_080558	70599.0	Mm.272881	NM_080558	ENSMUSG00000027007	Ssfa2	5730488C15Rik|CS-1|CS1|KRAP|SPAG13|mKIAA1927	sperm specific antigen 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-73822358-4	chr13	73822279	73822479	+	857.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347535, intron 8 of 8)	intron (NM_001347535, intron 8 of 8)	25252.0	NM_028186	72293.0	Mm.45506	NM_028186	ENSMUSG00000021567	Nkd2	2210403L10Rik|AW212591|mNkd2	naked cuticle 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-71055692-4	chr12	71055591	71055791	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081195, intron 11 of 23)	intron (NM_001081195, intron 11 of 23)	39724.0	NM_001081195	238247.0	Mm.241601	NM_001081195	ENSMUSG00000048118	Arid4a	A630009N03|A630067N03Rik|Rbbp1	AT rich interactive domain 4A (RBP1-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-85188687-2	chr10	85188587	85188787	+	839.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3633.0	NM_007771	12952.0	Mm.26237	NM_007771	ENSMUSG00000020038	Cry1	AU020726|AU021000|Phll1	cryptochrome 1 (photolyase-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117148529-4	chr10	117148410	117148610	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177798)	promoter-TSS (NM_177798)	-36.0	NM_177798	327826.0	Mm.135965	NM_177798	ENSMUSG00000020170	Frs2	4732458E18|C330018A15Rik|Frs2alpha|SNT1	fibroblast growth factor receptor substrate 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16250937-4	chr7	16250845	16251045	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001173550, intron 1 of 1)	URR1B|DNA|hAT-Charlie	-6791.0	NM_176912	319430.0	Mm.239570	NM_176912	ENSMUSG00000074361	C5ar2	C5L2|E030029A11Rik|Gpr77	complement component 5a receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-75475767-2	chr1	75475667	75475867	+	602.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001001566, exon 4 of 4)	exon (NM_001001566, exon 4 of 4)	3704.0	NM_001001566	74241.0	Mm.260577	NM_001001565	ENSMUSG00000032997	Chpf	1700028N03Rik|AI414328|D1Bwg1363e	chondroitin polymerizing factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84067864-2	chr8	84067764	84067964	+	803.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009055, intron 1 of 20)	intron (NM_009055, intron 1 of 20)	1028.0	NM_009055	19724.0	Mm.7892	NM_009055	ENSMUSG00000031706	Rfx1	AI047719|AI385641	regulatory factor X, 1 (influences HLA class II expression)	protein-coding	-0.802593673557486	-0.793094718163527	-0.341243695287107	-0.798614554876962	-0.802002397560642	-0.791090896558683	-0.332078011335404	-0.79819523297655	0.040958530317021	0.989184000390448	1
Merged-chr8-124617567-4	chr8	124617432	124617632	+	785.625	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023709, intron 19 of 19)	intron (NM_023709, intron 19 of 19)	41421.0	NM_023709	73647.0	Mm.6209	NM_023709	ENSMUSG00000031981	Capn9	2200003B16Rik|GC36|nCL-4|nCL4	calpain 9	protein-coding	-0.991597071560028	-1.11266276692436	-1.12372915630895	-1.13234486067054	-1.13506748179545	-1.11026463418018	-1.12122396832063	-0.590291635890923	1.70329920231503	0.601976331032042	1
Merged-chr1-92658761-3	chr1	92658655	92658855	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A0|LTR|ERVL-MaLR	-9914.0	NM_153114	260301.0	Mm.219545	NM_153114	ENSMUSG00000044055	Otos	OTOSP	otospiralin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-37617560-4	chr6	37617447	37617647	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	87374.0	NM_145364	208665.0	Mm.262635	NM_145364	ENSMUSG00000038641	Akr1d1	-	aldo-keto reductase family 1, member D1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-74930977-2	chr8	74930877	74931077	+	724.099976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57803.0	NM_001294278	71597.0	Mm.158735	NM_027837	ENSMUSG00000031621	Isx	9130012O13Rik|Pix-1	intestine specific homeobox	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167297523-2	chr2	167297423	167297623	+	758.25	f1_balb.idr|f1_c57bl6.idr	TTS (NM_019835)	TTS (NM_019835)	51655.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-63544154-2	chr4	63544054	63544254	+	825.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024173)	promoter-TSS (NM_024173)	-611.0	NM_024173	66290.0	Mm.371615	NM_024173	ENSMUSG00000039105	Atp6v1g1	1810024D14Rik|AA960677|ATP6J|Atp6g1|VAG1|Vma10	ATPase, H+ transporting, lysosomal V1 subunit G1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124807108-1	chr6	124807008	124807208	+	542.0	f1_balb.idr	Intergenic	B1_Mus2|SINE|Alu	-1553.0	NM_001306051	14794.0	Mm.261906	NM_013539	ENSMUSG00000038451	Spsb2	AI461677|C9|Grcc9|SSB2	splA/ryanodine receptor domain and SOCS box containing 2	protein-coding	1.08313205828498	0.634068772638111	0.618542639955716	1.85416585082194	1.09459686545048	0.63751240141843	0.62200305261145	1.86656105836853	0.0312149457721482	0.984315935835517	0.998431161219273
Merged-chr3-31090705-2	chr3	31090605	31090805	+	674.125	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4353.0	NM_001039090	20482.0	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-31944199-4	chr16	31944102	31944302	+	914.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172822, intron 2 of 2)	intron (NM_172822, intron 2 of 2)	4319.0	NR_027897	106264.0	Mm.347369	NM_025320	ENSMUSG00000107002	0610012G03Rik	AI839730	RIKEN cDNA 0610012G03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80771180-2	chr7	80771080	80771280	+	657.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016721, intron 2 of 37)	intron (NM_016721, intron 2 of 37)	32151.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-39680810-4	chr6	39680702	39680902	+	994.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139294, intron 2 of 21)	Lx7|LINE|L1	44661.0	NM_139294	109880.0	Mm.245513	NM_139294	ENSMUSG00000002413	Braf	9930012E13Rik|AA120551|AA387315|AA473386|B-raf|Braf-2|Braf2|C230098H17|C87398|D6Ertd631e	Braf transforming gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-71461434-2	chr16	71461334	71461534	+	690.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER2|LTR|ERV1	211530.0	NR_040576	78221.0	Mm.399298	NR_040576		4930567J20Rik	-	RIKEN cDNA 4930567J20 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88502838-3	chr3	88502740	88502940	+	944.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001111102, exon 1 of 10)	exon (NM_001111102, exon 1 of 10)	512.0	NM_001111102	16905.0	Mm.243014	NM_019390	ENSMUSG00000028063	Lmna	Dhe	lamin A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56896386-1	chr17	56896286	56896486	+	546.0	f1_c57bl6.idr	intron (NM_022328, intron 7 of 11)	intron (NM_022328, intron 7 of 11)	20753.0	NM_030141	78625.0	Mm.160106	NM_030141	ENSMUSG00000024209	1700061G19Rik	1700026H02|AI507598	RIKEN cDNA 1700061G19 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43492950-4	chr4	43492855	43493055	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001037913)	promoter-TSS (NM_001037913)	104.0	NR_001460	19782.0		NR_001460	ENSMUSG00000088088	Rmrp	1110032O22Rik|Rmrpr	RNA component of mitochondrial RNAase P	ncRNA	5.10728473129441	5.1939878800932	4.36209363041978	5.2293820201054	4.36822710353056	4.9048746284051	4.39519821396911	4.66617370185277	-0.514313045096803	0.149877511907028	0.602084263140464
Merged-chr18-53921624-4	chr18	53921615	53921815	+	952.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152809, intron 6 of 12)	intron (NM_152809, intron 6 of 12)	59602.0	NM_152809	70425.0	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	-1.84436392554074	-1.52091821270385	-1.82290882857571	-1.83054882630441	-1.84220491470818	-1.81159244170985	-1.82080331928423	-1.82918127036376	-1.56828060379516	0.655578384384393	1
Merged-chr18-45673651-2	chr18	45673551	45673751	+	565.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_080465, intron 5 of 7)	intron (NM_080465, intron 5 of 7)	113497.0	NM_080465	140492.0	Mm.411614	NM_080465	ENSMUSG00000054477	Kcnn2	KCa2.2|SK2|SKCA2|bc|fri	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-19092218-2	chr10	19092122	19092322	+	641.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1E1A|LTR|ERVL-MaLR	-49527.0	NR_038021	100504265.0	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-33308466-1	chr3	33308366	33308566	+	672.0	f0_balb.idr	Intergenic	Intergenic	-165275.0	NM_001163516	58869.0	Mm.151332	NM_021483	ENSMUSG00000027674	Pex5l	1700016J08Rik|PXR2|Pex2|TRIP8b|pex5Rp	peroxisomal biogenesis factor 5-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-173961649-4	chr1	173961598	173961798	+	987.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011940)	TTS (NM_011940)	-19026.0	NM_001302650	15950.0	Mm.463437	NM_008328	ENSMUSG00000039997	Ifi203	Ifi203a|Ifi203b|Mndal	interferon activated gene 203	protein-coding	5.73099781274794	4.69162921950936	5.10379277543655	4.71318549044546	6.82266913562867	6.75917796501288	6.99594418575474	6.32424448840344	1.75805116020306	1.59434306112173e-10	3.2606127353418e-08
Merged-chr7-143154090-4	chr7	143153986	143154186	+	909.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008434, intron 2 of 15)	intron (NM_008434, intron 2 of 15)	46832.0	NM_008434	16535.0	Mm.439769	NM_008434	ENSMUSG00000009545	Kcnq1	AW559127|KVLQT1|Kcna9	potassium voltage-gated channel, subfamily Q, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-99269380-2	chr10	99269280	99269480	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6149.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-139683905-3	chr7	139683822	139684022	+	847.333374	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302546)	promoter-TSS (NM_001302546)	-107.0	NM_001302546	212124.0	Mm.425507	NM_177212	ENSMUSG00000049571	Cfap46	9330101J02Rik|E030019B06Rik|Gm170|Ttc40	cilia and flagella associated protein 46	protein-coding	1.16798274277027	1.31047618752506	1.55345998540924	2.91838999189272	2.35378471757179	2.87847308165113	2.57064842035946	3.41287577913493	1.79514253793898	0.0669275348890266	0.388046019780223
Merged-chr1-53873875-4	chr1	53873782	53873982	+	790.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001883, intron 17 of 28)	intron (NM_001001883, intron 17 of 28)	24458.0	NR_106149	102465783.0		NR_106149	ENSMUSG00000098443	Mir7681	Gm27806|mmu-mir-7681	microRNA 7681	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-34041025-4	chr6	34040939	34041139	+	846.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028886, intron 3 of 19)	MER5A|DNA|hAT-Charlie	11591.0	NM_028886	74354.0	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-46710853-2	chr12	46710753	46710953	+	859.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_021361, intron 4 of 4)	intron (NM_021361, intron 4 of 4)	107922.0	NM_021361	664883.0	Mm.247195	NM_021361	ENSMUSG00000021047	Nova1	9430099M15Rik|G630039L02|Nova-1	neuro-oncological ventral antigen 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-99150289-2	chr12	99150189	99150389	+	642.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12519.0	NR_038130	67639.0	Mm.87374	NR_038130	ENSMUSG00000113210	4930474N09Rik	-	RIKEN cDNA 4930474N09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-70330855-4	chr16	70330756	70330956	+	952.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028803, intron 1 of 15)	intron (NM_028803, intron 1 of 15)	16907.0	NM_028803	74185.0	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-80483200-2	chr18	80483100	80483300	+	725.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-13533.0	NM_026295	67655.0	Mm.312893	NM_026295	ENSMUSG00000033323	Ctdp1	4930563P03Rik|AW553592	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-53191327-4	chr2	53191232	53191432	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022989)	promoter-TSS (NM_022989)	-145.0	NM_018785	56194.0	Mm.257474	NM_018785	ENSMUSG00000061136	Prpf40a	2810012K09Rik|FBP-11|FBP11|Fnbp11|Fnbp3	pre-mRNA processing factor 40A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3496264-3	chr4	3496183	3496383	+	776.06665	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40807.0	NR_037306	100499523.0		NR_037306	ENSMUSG00000094253	Mir3471-2	mmu-mir-3471-2	microRNA 3471-2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129199546-2	chr2	129199446	129199646	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001159593, exon 2 of 6)	5' UTR (NM_001159593, exon 2 of 6)	773.0	NM_001159593	20515.0	Mm.272675	NM_015747	ENSMUSG00000027397	Slc20a1	AI607883|Glvr-1|Glvr1	solute carrier family 20, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-25707104-2	chr2	25707004	25707204	+	837.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_023326, exon 1 of 1)	exon (NM_023326, exon 1 of 1)	225.0	NM_023326	107771.0	Mm.330057	NM_023326	ENSMUSG00000049086	Bmyc	2900002K07Rik|AW060705|Mycb	brain expressed myelocytomatosis oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-60935477-4	chr11	60935378	60935578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008928, intron 1 of 11)	intron (NM_008928, intron 1 of 11)	3421.0	NM_008928	26397.0	Mm.18494	NM_008928	ENSMUSG00000018932	Map2k3	AW212142|MEK3|MKK3|Prkmk3|mMKK3b	mitogen-activated protein kinase kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-32432518-2	chr18	32432418	32432618	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360876, intron 17 of 17)	intron (NM_001360876, intron 17 of 17)	-54234.0	NR_045403	402767.0	Mm.385109	NR_045403	ENSMUSG00000097413	A830052D11Rik	-	RIKEN cDNA A830052D11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-71807500-4	chr12	71807418	71807618	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MD2|LINE|L1	-23550.0	NM_026102	208846.0	Mm.87417	NM_026102	ENSMUSG00000034574	Daam1	-	dishevelled associated activator of morphogenesis 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81644911-2	chr10	81644811	81645011	+	661.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027480, intron 17 of 19)	intron (NM_027480, intron 17 of 19)	-4158.0	NM_001142963	100233208.0	Mm.327168	NM_001142963	ENSMUSG00000096856	Gm10778	-	predicted gene 10778	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46842802-4	chr8	46842690	46842890	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152560, intron 6 of 7)	intron (NR_152560, intron 6 of 7)	103045.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-102066611-2	chr7	102066511	102066711	+	545.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_104582, intron 1 of 21)	B3|SINE|B2	1120.0	NM_001286689	102443350.0	Mm.292904	NM_001286689	ENSMUSG00000099481	Xndc1	Xndr	Xrcc1 N-terminal domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-100670600-4	chr6	100670497	100670697	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181590, intron 1 of 10)	CpG	560.0	NM_181590	72171.0	Mm.256022	NM_181590	ENSMUSG00000035378	Shq1	2810403P18Rik|Grim-1	SHQ1 homolog (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-65173834-2	chr12	65173735	65173935	+	951.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1255.0	NM_172578	217653.0	Mm.21144	NM_172578	ENSMUSG00000047534	Mis18bp1	6720403H11|C79407|Knl2|mKIAA1903	MIS18 binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-143175395-3	chr6	143175268	143175468	+	671.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029250, intron 1 of 7)	PB1D11|SINE|Alu	8138.0	NM_029250	75320.0	Mm.272548	NM_029250	ENSMUSG00000030275	Etnk1	1110061E11Rik|4930555L11Rik|AI195356|AI841245|C80956|D6Ertd3e|EKI1	ethanolamine kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70073966-2	chr11	70073866	70074066	+	632.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18678.0	NM_007493	11890.0	Mm.1357	NM_007493	ENSMUSG00000040963	Asgr2	ASGPR2|Asgr|Asgr-2|HL-2	asialoglycoprotein receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25269192-1	chr7	25269092	25269292	+	618.0	f0_balb.idr	intron (NM_001302811, intron 1 of 20)	intron (NM_001302811, intron 1 of 20)	1493.0	NM_001302811	71722.0	Mm.28833	NM_027882	ENSMUSG00000005442	Cic	1200010B10Rik|mKIAA0306	capicua transcriptional repressor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-87433853-2	chr11	87433753	87433953	+	591.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_031386, exon 2 of 31)	exon (NM_031386, exon 2 of 31)	6262.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-10081935-2	chr2	10081835	10082035	+	897.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025280, intron 1 of 4)	B1_Mur4|SINE|Alu	1323.0	NM_025280	16588.0	Mm.35498	NM_025280	ENSMUSG00000037262	Kin	Kin17	Kin17 DNA and RNA binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-24708290-1	chr6	24708190	24708390	+	573.0	f0_balb.idr	Intergenic	Intergenic	-24955.0	NM_028920	74409.0	Mm.87331	NM_028920	ENSMUSG00000029679	Hyal6	4932701A20Rik|Hyal-ps1|Hyalp1	hyaluronoglucosaminidase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-142736610-2	chr6	142736510	142736710	+	588.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR17B_Mm|LTR|ERVK	-20076.0	NM_009908	12764.0	Mm.3820	NM_009908	ENSMUSG00000030282	Cmas	AW208911|CMPNeu5Ac|D6Bwg0250e	cytidine monophospho-N-acetylneuraminic acid synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-170173152-2	chr1	170173052	170173252	+	665.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133806, intron 1 of 10)	B1_Mus2|SINE|Alu	1812.0	NM_133806	107652.0	Mm.27969	NM_133806	ENSMUSG00000026670	Uap1	AA420407|AA437972|AGX-1|AGX-2|AGX1|AgX|ESTM38|SPAG2	UDP-N-acetylglucosamine pyrophosphorylase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-103441025-2	chr5	103440925	103441125	+	617.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011204, intron 1 of 47)	intron (NM_011204, intron 1 of 47)	15833.0	NM_011204	19249.0	Mm.3414	NM_011204	ENSMUSG00000034573	Ptpn13	AI324989|PTP-BL|PTPL1|Ptpri|RIP	protein tyrosine phosphatase, non-receptor type 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-87731441-2	chr6	87731341	87731541	+	637.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001159697, exon 1 of 8)	exon (NM_001159697, exon 1 of 8)	572.0	NM_001159697	58229.0	Mm.333229	NM_021418	ENSMUSG00000068263	Efcc1	Ccdc48	EF hand and coiled-coil domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-111411750-4	chr10	111411656	111411856	+	939.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61471.0	NM_001358932	53605.0	Mm.290407	NM_015781	ENSMUSG00000058799	Nap1l1	AA407126|AI256722|D10Ertd68e|NAP-1	nucleosome assembly protein 1-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-119123075-1	chr8	119122975	119123175	+	707.0	f0_balb.idr	intron (NM_019707, intron 7 of 13)	GA-rich|Low_complexity|Low_complexity	-221463.0	NM_024219	68196.0	Mm.358714	NM_024219	ENSMUSG00000031839	Hsbp1	0610007A03Rik|AA408769|Hsp25	heat shock factor binding protein 1	protein-coding	-1.29633872064033	-1.26720680975202	-1.27768629845203	-1.28629446248818	-0.70879630402184	-1.2649358608345	-1.2753139719142	-1.28475360524138	2.50884260628271	0.468217847016783	1
Merged-chr7-141476384-4	chr7	141476288	141476488	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252588)	promoter-TSS (NM_001252588)	8.0	NM_001252588	64540.0	Mm.489619	NM_053082	ENSMUSG00000025511	Tspan4	AI325509|AI746565|D130042I01Rik|NAG-2|Tm4sf7|Tspan-4	tetraspanin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-16454833-4	chr14	16454743	16454943	+	944.05835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289760, intron 5 of 9)	GA-rich|Low_complexity|Low_complexity	89637.0	NM_009409	21974.0	Mm.130362	NM_009409	ENSMUSG00000017485	Top2b	D230016L12Rik|Top-2	topoisomerase (DNA) II beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-88066127-4	chr17	88066036	88066236	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081034)	promoter-TSS (NM_001081034)	-845.0	NM_001081034	225055.0	Mm.386857	NM_001081034	ENSMUSG00000005371	Fbxo11	C80048|Jf	F-box protein 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-123172979-2	chr6	123172879	123173079	+	720.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001004159)	promoter-TSS (NM_001004159)	-44.0	NM_001004159	381809.0	Mm.333372	NM_001004159	ENSMUSG00000067767	Clec4b2	Aplra1|F830043G12Rik|mDCAR1	C-type lectin domain family 4, member b2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-25470840-1	chr14	25470740	25470940	+	719.0	f0_balb.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	11655.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-21570226-3	chr11	21570132	21570332	+	624.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316675, intron 1 of 8)	intron (NM_001316675, intron 1 of 8)	1702.0	NM_008618	17449.0	Mm.212703	NM_008618	ENSMUSG00000020321	Mdh1	B230377B03Rik|D17921|MDH-s|MDHA|Mor-2|Mor2	malate dehydrogenase 1, NAD (soluble)	protein-coding	0.679825618108622	0.585203760419848	0.244215602217045	0.394641870998926	0.774713733358242	0.251170904680951	0.559734119961433	0.240612232377585	-0.0392953997281904	0.983103630730144	1
Merged-chr18-60687237-2	chr18	60687137	60687337	+	618.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001348101, exon 15 of 15)	3' UTR (NM_001348101, exon 15 of 15)	23827.0	NR_045401	328963.0	Mm.417203	NR_045401		G630071F17Rik	G630071F17	RIKEN cDNA G630071F17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-87369350-2	chr16	87369250	87369450	+	692.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001159331)	TTS (NM_001159331)	15165.0	NM_026366	67768.0	Mm.296532	NM_026366	ENSMUSG00000044442	N6amt1	5830445C04Rik|Hemk2|Pred28	N-6 adenine-specific DNA methyltransferase 1 (putative)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-56715744-4	chr16	56715659	56715859	+	876.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357126, intron 1 of 8)	intron (NM_001357126, intron 1 of 8)	1691.0	NM_001357124	21787.0	Mm.425970	NM_019678	ENSMUSG00000022757	Tfg	AI173908	Trk-fused gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-184534244-4	chr1	184534129	184534329	+	897.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040472, intron 2 of 5)	intron (NR_040472, intron 2 of 5)	23462.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-59185921-2	chr14	59185821	59186021	+	944.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-7172.0	NM_001004158	380907.0	Mm.81009	NM_001004158	ENSMUSG00000053868	Gm5142	EG380907	predicted gene 5142	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-68193440-3	chr8	68193266	68193466	+	766.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-83162.0	NM_028182	72281.0	Mm.40974	NM_028182	ENSMUSG00000053886	Sh2d4a	2210402M20Rik|SH2A	SH2 domain containing 4A	protein-coding	1.02826184939361	0.751049193965841	1.70080641180985	0.922287189540013	1.16519214618813	0.981929891475465	1.71724464749067	0.926398081749584	0.302470521735621	0.823102310007502	0.998431161219273
Merged-chr11-106502776-2	chr11	106502676	106502876	+	652.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_198292, exon 12 of 12)	3' UTR (NM_198292, exon 12 of 12)	1785.0	NR_030703	100216537.0		NR_030703	ENSMUSG00000065126	Snord104	-	small nucleolar RNA, C/D box 104	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99376994-2	chr7	99376894	99377094	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4524.0	NM_001362168	233552.0	Mm.286317	NM_201352	ENSMUSG00000035314	Gdpd5	BC024955|Gde2	glycerophosphodiester phosphodiesterase domain containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-173673683-3	chr1	173673572	173673772	+	665.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162938)	promoter-TSS (NM_001162938)	-8.0	NM_001162938	100033459.0	Mm.303377	NM_001162938	ENSMUSG00000066677	Ifi208	9830148g24rik|E430029J22Rik|NG2creBAC|Pydc3|Pyr-rv1|Tg(Cspg4-cre)1Akik	interferon activated gene 208	protein-coding	1.78408230126189	1.28945845689007	1.43453820985359	2.21324352082308	1.70386079275942	1.65440102105007	1.04202226258027	1.55122804623003	-0.724751004401994	0.527182184484959	0.948839578239191
Merged-chr19-6125375-2	chr19	6125275	6125475	+	805.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026912, intron 1 of 7)	intron (NM_026912, intron 1 of 7)	2840.0	NM_026912	69024.0	Mm.329629	NM_026912	ENSMUSG00000024787	Snx15	1500032B08Rik|E130013C21Rik	sorting nexin 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-62493177-2	chr10	62493077	62493277	+	679.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_011157)	TTS (NM_011157)	-6372.0	NM_001358543	30930.0	Mm.260703	NM_133672	ENSMUSG00000020078	Vps26a	AA407240|HB58|Vps26	VPS26 retromer complex component A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100376116-2	chr11	100376016	100376216	+	726.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010593, intron 9 of 13)	ID_B1|SINE|B4	-19975.0	NM_010404	15114.0	Mm.281700	NM_010404	ENSMUSG00000006930	Hap1	HAP-1	huntingtin-associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-23996239-1	chr17	23996139	23996339	+	686.0	f1_c57bl6.idr	intron (NM_133731, intron 4 of 5)	intron (NM_133731, intron 4 of 5)	1861.0	NM_133731	70835.0	Mm.157351	NM_133731	ENSMUSG00000045027	Prss22	4733401N09Rik|BSSP-4|SP001LA	protease, serine 22	protein-coding	-0.199403027832643	0.314973334608478	-0.189269369747306	-0.193076696416737	0.537883019377512	0.0170531826100526	-0.188181416102605	-0.192411383845847	1.02253810262146	0.66816542579109	1
Merged-chr6-39049558-2	chr6	39049458	39049658	+	610.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 9 of 12)	MIRb|SINE|MIR	18028.0	NR_040523	69986.0	Mm.490941	NR_040523	ENSMUSG00000100121	1700025N23Rik	-	RIKEN cDNA 1700025N23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91947009-2	chr2	91946918	91947118	+	836.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166597, intron 1 of 31)	intron (NM_001166597, intron 1 of 31)	-2088.0	NR_105965	102465604.0		NR_105965	ENSMUSG00000098651	Mir6999	Gm27673|mmu-mir-6999	microRNA 6999	ncRNA	0.922506163663211	2.84082012664771	1.80765679084763	0.962713289062626	2.09480892549245	2.04007900369672	1.82393092152212	0.966786965830935	-0.27494863243487	0.826703808666055	0.998431161219273
Merged-chr7-28813957-2	chr7	28813857	28814057	+	918.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_177301, exon 3 of 13)	exon (NM_177301, exon 3 of 13)	3067.0	NM_177301	15388.0	Mm.9043	NM_177301	ENSMUSG00000015165	Hnrnpl	C79783|D830027H13Rik|Hnrpl	heterogeneous nuclear ribonucleoprotein L	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-23492979-4	chr16	23492874	23493074	+	927.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359083, intron 4 of 10)	MIR3|SINE|MIR	27841.0	NM_008555	17174.0	Mm.1213	NM_008555	ENSMUSG00000022887	Masp1	AW048060|CCPII|Crarf|Masp1/3	mannan-binding lectin serine peptidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-92502216-2	chr5	92502116	92502316	+	924.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007644, intron 1 of 11)	intron (NM_007644, intron 1 of 11)	3441.0	NM_007644	12492.0	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-22859317-4	chr8	22859239	22859439	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081149)	promoter-TSS (NM_001081149)	-200.0	NM_001081149	244349.0	Mm.182776	NM_001081149	ENSMUSG00000031540	Kat6a	1500036M03|9930021N24Rik|MOZ|Myst3|Zfp220	K(lysine) acetyltransferase 6A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91648261-4	chr16	91648133	91648333	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019973, intron 1 of 4)	CpG-5863	409.0	NM_178880	20658.0	Mm.46401	NM_019973	ENSMUSG00000022961	Son	2900011L12Rik|AA409051|AU067731|C81487|mKIAA1019|nrebp	Son DNA binding protein	protein-coding	4.68709436005617	2.71227422233722	4.20045105833806	3.22585884287262	4.49297934188733	3.78798527414852	4.53881939725846	4.58027339478595	0.592659823469907	0.2593235970302	0.759363289253582
Merged-chr17-5454418-4	chr17	5454305	5454505	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14145.0	NM_027457	70544.0	Mm.46654	NM_027457	ENSMUSG00000004945	Tmem242	1110008A10Rik|2310046K16Rik|5730437N04Rik	transmembrane protein 242	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-11682868-4	chr11	11682806	11683006	+	994.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3019.0	NM_009578	22778.0	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3090742-1	chr4	3090642	3090842	+	789.0	f1_balb.idr	Intergenic	GSAT_MM|Satellite|Satellite	-81341.0	NM_001167534	100312470.0	Mm.480297	NM_001167534	ENSMUSG00000115072	Vmn1r2	Gm11776	vomeronasal 1 receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21507256-2	chr9	21507156	21507356	+	863.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001324510)	TTS (NM_001324510)	2638.0	NM_001324510	17083.0	Mm.196618	NM_010744	ENSMUSG00000032180	Tmed1	Il1rl1l|Ly84l|St2l	transmembrane p24 trafficking protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69324781-2	chr11	69324681	69324881	+	793.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172560)	promoter-TSS (NM_172560)	795.0	NM_001024206	245828.0	Mm.28073	NM_001024206	ENSMUSG00000049299	Trappc1	BET5|D11Ertd172e|MUM2	trafficking protein particle complex 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-117485582-3	chr5	117485479	117485679	+	737.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001312914, intron 1 of 19)	intron (NM_001312914, intron 1 of 19)	71577.0	NM_001312914	333050.0	Mm.437947	NM_001034873	ENSMUSG00000061578	Ksr2	-	kinase suppressor of ras 2	protein-coding	1.88261768127882	1.83717307248491	1.918783836798	1.16161993722885	2.00117404279375	2.62666582243045	1.93397588676917	1.57764893755847	0.983025707535714	0.337915844197088	0.838245547624395
Merged-chr14-68582142-4	chr14	68582043	68582243	+	947.93335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021475)	promoter-TSS (NM_021475)	-71.0	NM_021475	58860.0	Mm.36742	NM_021475	ENSMUSG00000022057	Adamdec1	2210414L24Rik|AI574231|Dcsn	ADAM-like, decysin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52985581-4	chr13	52985482	52985682	+	961.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4543.0	NM_017373	18030.0	Mm.136604	NM_017373	ENSMUSG00000056749	Nfil3	AV225605|E4BP4	nuclear factor, interleukin 3, regulated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-99344041-4	chr13	99343911	99344111	+	834.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173757)	promoter-TSS (NM_173757)	667.0	NM_026873	68927.0	Mm.276502	NM_026873	ENSMUSG00000021650	Ptcd2	1190005P08Rik	pentatricopeptide repeat domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-114908170-4	chr6	114908062	114908262	+	906.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356371, intron 2 of 5)	Lx7|LINE|L1	13659.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-97772783-4	chr4	97772653	97772853	+	958.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122952, intron 1 of 10)	intron (NM_001122952, intron 1 of 10)	-4873.0	NM_001122953	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-41388715-4	chr4	41388606	41388806	+	768.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001290454, exon 6 of 6)	exon (NM_001290454, exon 6 of 6)	36743.0	NM_001355508	67123.0	Mm.289795	NM_023305	ENSMUSG00000028437	Ubap1	2700092A01Rik|NAG20|UBAP-1|Ubap	ubiquitin-associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-132591745-3	chr2	132591638	132591838	+	949.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A0|LTR|ERVL-MaLR	-6458.0	NR_033468	767814.0	Mm.371752	NR_033468	ENSMUSG00000074783	AU019990	-	expressed sequence AU019990	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135572578-2	chr5	135572478	135572678	+	993.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_019577, exon 2 of 3)	exon (NM_019577, exon 2 of 3)	471.0	NM_019577	56221.0	Mm.31505	NM_019577	ENSMUSG00000004814	Ccl24	CKb-6|MPIF-2|Scya24	chemokine (C-C motif) ligand 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-87675214-4	chr10	87675117	87675317	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	153422.0	NM_008777	18478.0	Mm.263539	NM_008777	ENSMUSG00000020051	Pah	AW106920	phenylalanine hydroxylase	protein-coding	4.31399026291043	5.2130627813477	3.80300024189565	4.65543893031778	3.67656324870425	4.46604679083099	4.32499656995403	4.86339483443207	-0.24645478815196	0.579456248926263	0.965985075107763
Merged-chr6-17612834-4	chr6	17612713	17612913	+	952.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24197.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-11322754-2	chr4	11322654	11322854	+	942.875	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081201)	promoter-TSS (NM_001081201)	-623.0	NM_001081201	381510.0	Mm.331486	NM_001081201	ENSMUSG00000045205	Dpy19l4	Gm1023|Narg3	dpy-19-like 4 (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-122115730-2	chr9	122115630	122115830	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1536.0	NM_001164572	20623.0	Mm.257989	NM_133741	ENSMUSG00000038145	Snrk	2010012F07Rik|AI448042|AW547029|E030034B15|R74830|mKIAA0096	SNF related kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-68009771-2	chr15	68009671	68009871	+	965.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	249085.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-91137564-4	chr10	91137481	91137681	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13618.0	NM_133668	18674.0	Mm.298	NM_133668	ENSMUSG00000061904	Slc25a3	5730556H19Rik|PTP|Phc	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-62249119-2	chr14	62249019	62249219	+	805.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43860.0	NM_173419	239133.0	Mm.127330	NM_173419	ENSMUSG00000048281	Dleu7	BC038059	deleted in lymphocytic leukemia, 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-42532746-2	chr12	42532646	42532846	+	658.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	501471.0	NR_148724	102636207.0		NR_148724		Gm33340	Gm40882	predicted gene, 33340	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-8942439-3	chr19	8942342	8942542	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_144872)	TTS (NM_144872)	522.0	NM_011842	23942.0	Mm.25339	NM_011842	ENSMUSG00000071646	Mta2	AW550797|Mata1l1|Mta1l1|mmta2	metastasis-associated gene family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-54992972-4	chr6	54992868	54993068	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026637)	promoter-TSS (NM_026637)	-101.0	NM_026637	110175.0	Mm.294708	NM_026637	ENSMUSG00000002797	Ggct	A030007L17Rik|AA673177|Gctg|Ggc	gamma-glutamyl cyclotransferase	protein-coding	5.58783500483476	6.06687091947879	4.87699304022265	5.02853955015	5.9933563961226	5.70988618296831	5.80646806015974	5.70549145467054	0.387477843123999	0.193716336538542	0.673301976936277
Merged-chr10-118797514-3	chr10	118797402	118797602	+	842.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	71401.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-99189744-2	chr13	99189644	99189844	+	778.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001004149, intron 1 of 4)	intron (NM_001004149, intron 1 of 4)	4921.0	NM_001004149	238803.0	Mm.343207	NM_001004149	ENSMUSG00000050919	Zfp366	DC-SCRIPT|Znf366	zinc finger protein 366	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33958812-2	chr16	33958712	33958912	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001348087, intron 4 of 4)	intron (NM_001348087, intron 4 of 4)	8226.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-137578432-4	chr4	137578335	137578535	+	880.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-3255.0	NM_001033979	435811.0	Mm.359646	NM_001033979	ENSMUSG00000094035	Ldlrad2	-	low density lipoprotein receptor A domain containing 2	protein-coding	3.3340762968231	1.55023564524821	2.72673548056679	3.08432486277238	3.08501496535429	2.07969883366172	2.63340498099197	2.55102549005315	-0.371353323064001	0.648931630158748	0.985309421980721
Merged-chr10-118178996-2	chr10	118178881	118179081	+	779.666626	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-25983.0	NM_016971	50929.0	Mm.103585	NM_016971	ENSMUSG00000074695	Il22	IL-22|IL-22a|ILTIFa|Iltif	interleukin 22	protein-coding	0.00983243559923185	0.359613639481688	-0.117026780912479	-0.120501742263253	-0.12539583963184	0.368768709400334	0.202070359710185	-0.119895371706277	0.422176819077143	0.848504499992369	1
Merged-chr7-98361428-4	chr7	98361312	98361512	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001168539)	promoter-TSS (NM_001168539)	-84.0	NM_001168539	244152.0	Mm.25317	NM_001024619	ENSMUSG00000049580	Tsku	9530051K01Rik|E2ig4|Lrrc54|Tsk	tsukushi, small leucine rich proteoglycan	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-65565843-3	chr18	65565732	65565932	+	988.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_105742, intron 1 of 6)	intron (NR_105742, intron 1 of 6)	-14398.0	NM_207255	328977.0	Mm.286232	NM_207255	ENSMUSG00000042439	Zfp532	C530030I18Rik|Znf532|mKIAA1629	zinc finger protein 532	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64360767-4	chr5	64360664	64360864	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	107178.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	0.118806225837274	0.146374257052731	0.137484348029457	0.130533505963389	0.298855393054851	1.28957950432843	0.814405158589875	0.332449050860855	4.44197724528154	0.0188490021133202	1
Merged-chr5-121586647-4	chr5	121586524	121586724	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009656, intron 1 of 12)	intron (NM_009656, intron 1 of 12)	7200.0	NM_009656	11669.0	Mm.284446	NM_009656	ENSMUSG00000029455	Aldh2	AHD-M1|ALDH-E2|ALDHI|Ahd-5|Ahd5	aldehyde dehydrogenase 2, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-61430537-2	chr9	61430437	61430637	+	767.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58171.0	NM_001083927	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-73731057-4	chr15	73730959	73731159	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166388, intron 1 of 5)	intron (NM_001166388, intron 1 of 5)	6129.0	NM_001166388	19245.0	Mm.390807	NM_008975	ENSMUSG00000059895	Ptp4a3	AV088979|Prl-3|pPtp4a3	protein tyrosine phosphatase 4a3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-129514412-3	chr6	129514313	129514513	+	807.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081186, intron 2 of 4)	intron (NM_001081186, intron 2 of 4)	1856.0	NM_001081186	330428.0	Mm.44237	NM_001081186	ENSMUSG00000030160	Tmem52b	D630042F21Rik	transmembrane protein 52B	protein-coding	1.24489920959764	1.5447994295745	1.48570255468729	0.814490321926543	0.976020788107074	1.55788008482617	1.71847456612982	0.816463829079859	0.0968550573818729	0.942939483280952	0.998431161219273
Merged-chr19-7437033-2	chr19	7436933	7437133	+	599.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_053076, intron 1 of 6)	intron (NM_053076, intron 1 of 6)	14460.0	NR_105957	102466781.0		NR_105957	ENSMUSG00000098293	Mir6991	Gm27966|mmu-mir-6991	microRNA 6991	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-38927315-4	chr2	38927197	38927397	+	975.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010264)	promoter-TSS (NM_010264)	-836.0	NM_010264	14536.0	Mm.439703	NM_010264	ENSMUSG00000063972	Nr6a1	1700113M01Rik|Gcnf|NCNF|RTR	nuclear receptor subfamily 6, group A, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-142877521-4	chr5	142877399	142877599	+	782.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033312, intron 4 of 4)	intron (NM_001033312, intron 4 of 4)	17739.0	NM_001033312	231863.0	Mm.89753	NM_001033312	ENSMUSG00000066640	Fbxl18	AI427077|B130019G13Rik|C330021B20Rik	F-box and leucine-rich repeat protein 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-35147004-3	chr15	35146884	35147084	+	634.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357821, intron 1 of 11)	intron (NM_001357821, intron 1 of 11)	8822.0	NM_001357821	56274.0	Mm.262330	NM_019635	ENSMUSG00000022329	Stk3	0610042I06Rik|MST|Mst2|Mst3|Ste20|mess1	serine/threonine kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59734151-2	chr15	59734051	59734251	+	555.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60808.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-5058330-4	chr7	5058257	5058457	+	917.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146178, intron 3 of 4)	intron (NM_146178, intron 3 of 4)	1631.0	NM_146178	232821.0	Mm.482157	NM_146178	ENSMUSG00000035228	Ccdc106	BC018462	coiled-coil domain containing 106	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70520488-4	chr14	70520386	70520586	+	943.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009755)	promoter-TSS (NM_009755)	186.0	NM_001360021	12153.0	Mm.27757	NM_009755	ENSMUSG00000022098	Bmp1	Pcp|Tld	bone morphogenetic protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-131055779-1	chr2	131055679	131055879	+	805.0	f1_c57bl6.idr	exon (NM_001163529, exon 8 of 20)	exon (NM_001163529, exon 8 of 20)	8035.0	NR_136922	110751.0	Mm.108550	NM_033615	ENSMUSG00000027318	Adam33	Adaml	a disintegrin and metallopeptidase domain 33	protein-coding	2.30483881269964	1.89926879639401	1.47453356785226	2.71283770373703	1.56489307537619	1.73618659309472	1.85096693049614	2.16904581641493	-0.890536737002316	0.360702268087251	0.856644690046469
Merged-chr18-62023315-4	chr18	62023207	62023407	+	899.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	70232.0	NM_172628	225608.0	Mm.262320	NM_172628	ENSMUSG00000045629	Sh3tc2	D430044G18Rik	SH3 domain and tetratricopeptide repeats 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-5083170-4	chr1	5083077	5083277	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310442)	promoter-TSS (NM_001310442)	91.0	NM_001310442	108664.0	Mm.27082	NM_133826	ENSMUSG00000033793	Atp6v1h	0710001F19Rik|AU022349|CGI-11|SFD|SFDalpha|SFDbeta|VMA13	ATPase, H+ transporting, lysosomal V1 subunit H	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-61132958-4	chr18	61132840	61133040	+	960.8250119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134134, intron 20 of 20)	intron (NM_134134, intron 20 of 20)	15472.0	NR_105949	102466212.0		NR_105949	ENSMUSG00000098389	Mir6983	Gm27496|mmu-mir-6983	microRNA 6983	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-57566812-2	chr9	57566712	57566912	+	577.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_022813, intron 1 of 8)	intron (NM_022813, intron 1 of 8)	5868.0	NM_022813	24044.0	Mm.286069	NM_022813	ENSMUSG00000040188	Scamp2	AI875466|Sc2	secretory carrier membrane protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119457852-2	chr11	119457752	119457952	+	550.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	33383.0	NR_153849	78439.0	Mm.440446	NR_153849	ENSMUSG00000109408	A930037H05Rik	Gm44935	RIKEN cDNA A930037H05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-10228196-4	chr14	10228123	10228323	+	928.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360141, intron 5 of 9)	intron (NM_001360141, intron 5 of 9)	225235.0	NM_001308286	14198.0	Mm.397619	NM_010210	ENSMUSG00000060579	Fhit	AW045638|Fra14A2	fragile histidine triad gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-86474573-2	chr6	86474473	86474673	+	663.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_131126, intron 1 of 2)	RMER16B|LTR|ERVK	6257.0	NR_131125	320486.0	Mm.391625	NR_131125	ENSMUSG00000085589	A430078I02Rik	T25621	RIKEN cDNA A430078I02 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-12742656-1	chr17	12742556	12742756	+	632.0	f0_balb.idr	intron (NR_027773, intron 1 of 2)	intron (NR_027773, intron 1 of 2)	1345.0	NR_027784	104103.0	Mm.26553	NR_002853	ENSMUSG00000078247	Airn	2810051F02Rik|2810434M15Rik|AI256653|AI597500|AW049873|Air|B930018I07Rik|D17Ertd663e|IGF2RAS	antisense Igf2r RNA	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-120948559-4	chr1	120948456	120948656	+	959.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	-138849.0	NR_038008	98452.0	Mm.131017	NR_038008	ENSMUSG00000097881	Celrr	AI848258|B230209K01Rik|Celr|Gm818	cerebellum expressed regulatory RNA	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-87266739-4	chr12	87266633	87266833	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001142580)	promoter-TSS (NM_001142580)	5.0	NM_146036	217737.0	Mm.22626	NM_146036	ENSMUSG00000021037	Ahsa1	BC023857|p38	AHA1, activator of heat shock protein ATPase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-137888113-2	chr5	137888013	137888213	+	629.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16355.0	NM_001024932	545812.0	Mm.332769	NM_001024932	ENSMUSG00000066682	Pilrb2	EG545812	paired immunoglobin-like type 2 receptor beta 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-38011859-4	chr1	38011777	38011977	+	907.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198303, intron 1 of 23)	intron (NM_198303, intron 1 of 23)	13867.0	NM_198303	226982.0	Mm.260943	NM_198303	ENSMUSG00000026083	Eif5b	A030003E17Rik|BC018347|IF2	eukaryotic translation initiation factor 5B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-32311972-4	chr18	32311886	32312086	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65231.0	NM_001083334	30948.0	Mm.4383	NM_009668	ENSMUSG00000024381	Bin1	ALP-1|Amphl|BRAMP-2|SH3P9	bridging integrator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115475862-3	chr5	115475786	115475986	+	877.9166869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8411.0	NM_001167691	75387.0	Mm.332616	NM_133760	ENSMUSG00000029524	Sirt4	4930596O17Rik	sirtuin 4	protein-coding	3.38170139350296	2.13701295217782	3.26814133710404	3.24971611225441	2.96772993604055	2.93393097685763	1.57344325039458	2.94637125837536	-0.668784059472096	0.38170585703623	0.872879327710422
Merged-chr1-106030547-4	chr1	106030453	106030653	+	929.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001122676, exon 13 of 14)	exon (NM_001122676, exon 13 of 14)	40147.0	NM_001122675	227449.0	Mm.210188	NM_001122675	ENSMUSG00000038866	Zcchc2	9930114B20Rik|AW212015	zinc finger, CCHC domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-66536143-2	chr6	66536043	66536243	+	760.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355624, intron 2 of 5)	intron (NM_001355624, intron 2 of 5)	922.0	NM_001355624	56150.0	Mm.489653	NM_019499	ENSMUSG00000029910	Mad2l1	AA673185|MAD2	MAD2 mitotic arrest deficient-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-134985938-2	chr5	134985838	134986038	+	584.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009902)	promoter-TSS (NM_009902)	-276.0	NM_009902	12739.0	Mm.158662	NM_009902	ENSMUSG00000070473	Cldn3	AI182374|Cpetr2|mRVP1	claudin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-11180987-2	chr16	11180887	11181087	+	597.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_151506, intron 3 of 3)	RLTR20D|LTR|ERVK	2811.0	NR_151506	105246071.0	Mm.426799	NR_151506		4930509G22Rik	-	RIKEN cDNA 4930509G22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-29441746-2	chr17	29441646	29441846	+	914.6666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49299.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-120822242-2	chr7	120822142	120822342	+	823.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20589.0	NM_007908	13631.0	Mm.25997	NM_007908	ENSMUSG00000035064	Eef2k	C86191|eEF-2K	eukaryotic elongation factor-2 kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-26649405-2	chr11	26649305	26649505	+	973.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2B|LTR|ERVL	-55485.0	NM_001252447	69922.0	Mm.285351	NM_027260	ENSMUSG00000064090	Vrk2	2810003O05Rik|AI447698	vaccinia related kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-86692061-2	chr4	86691962	86692162	+	674.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-22003.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	0.711162561402044	0.272076021748636	0.266014473316204	0.673149390971014	0.807804074472419	0.273443818220312	0.715773334580091	0.26216005812885	0.271177523049929	0.88893952074928	1
Merged-chr17-71874300-2	chr17	71874214	71874414	+	582.25	f0_balb.idr|f1_balb.idr	intron (NM_007439, intron 27 of 28)	intron (NM_007439, intron 27 of 28)	92367.0	NM_030179	78785.0	Mm.196382	NM_030179	ENSMUSG00000024059	Clip4	1700024K14Rik|1700074B05Rik|4833417L20Rik|5830409B12Rik|Rsnl2	CAP-GLY domain containing linker protein family, member 4	protein-coding	2.20879361361196	2.17511039298011	1.7105727488337	2.19537836002336	2.44282378005266	2.93865872006892	2.92738672082735	2.98866270218217	1.6414362289545	0.0367512813347393	0.272305311364167
Merged-chr10-16651817-2	chr10	16651717	16651917	+	691.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3B|LINE|L1	443965.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-103102072-2	chr3	103101972	103102172	+	593.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25484.0	NM_177857	329727.0	Mm.293641	NM_177857	ENSMUSG00000007379	Dennd2c	A930010I20Rik	DENN/MADD domain containing 2C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-156840775-4	chr2	156840732	156840932	+	909.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291124, intron 1 of 3)	CpG	825.0	NM_173396	228839.0	Mm.315625	NM_173396	ENSMUSG00000062175	Tgif2	4921501K24|5730599O09Rik|C80753|C81206	TGFB-induced factor homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-50893273-1	chr14	50893173	50893373	+	735.0	f1_c57bl6.idr	promoter-TSS (NM_001166651)	promoter-TSS (NM_001166651)	-18.0	NM_001166651	546611.0	Mm.390692	NM_001166651	ENSMUSG00000090799	Klhl33	EG546611	kelch-like 33	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91944380-4	chr2	91944280	91944480	+	890.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_105965)	TTS (NR_105965)	550.0	NR_105965	102465604.0		NR_105965	ENSMUSG00000098651	Mir6999	Gm27673|mmu-mir-6999	microRNA 6999	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-129713798-4	chr6	129713692	129713892	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001012520, intron 1 of 5)	intron (NM_001012520, intron 1 of 5)	3340.0	NM_001012520	503550.0	Mm.376476	NM_001012520	ENSMUSG00000067610	Klri1	-	killer cell lectin-like receptor family I member 1	protein-coding	4.77460243969546	5.02539947147244	4.62587690353702	5.0872627810957	4.41136515774175	3.90234933962879	4.15801937065904	4.15878970683505	-0.898183288809312	0.015206577533116	0.14674143477935
Merged-chr1-164218327-3	chr1	164218197	164218397	+	957.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007976, intron 24 of 24)	intron (NM_007976, intron 24 of 24)	-30749.0	NM_001276455	116914.0	Mm.35444	NM_054087	ENSMUSG00000040918	Slc19a2	AV276020|AW322295|DDA1|THTR1|TRMA|ThTr-1	solute carrier family 19 (thiamine transporter), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-87321831-2	chr17	87321731	87321931	+	850.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028639, intron 6 of 19)	B2_Mm2|SINE|B2	38945.0	NM_028639	225049.0	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69759485-4	chr11	69759386	69759586	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291068)	promoter-TSS (NM_001291068)	-853.0	NM_001291068	20020.0	Mm.16533	NM_009089	ENSMUSG00000005198	Polr2a	220kDa|Rpb1|Rpo2-1	polymerase (RNA) II (DNA directed) polypeptide A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-59843001-4	chr13	59842896	59843096	+	759.075012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB4|LINE|L1	-19849.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36308211-4	chr1	36308140	36308340	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290727, intron 1 of 5)	intron (NM_001290727, intron 1 of 5)	507.0	NM_001172205	214855.0	Mm.34316	NM_145996	ENSMUSG00000037447	Arid5a	D430024K22Rik|Mrf1	AT rich interactive domain 5A (MRF1-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-121694671-2	chr8	121694571	121694771	+	843.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35888.0	NM_020605	57340.0	Mm.306870	NM_020605	ENSMUSG00000025318	Jph3	JP-3|Jp3	junctophilin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-20500745-4	chr11	20500647	20500847	+	940.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16D1|LTR|ERVL	-42506.0	NM_021372	58172.0	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95043099-4	chr3	95043010	95043210	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008951)	promoter-TSS (NM_008951)	-496.0	NM_008951	19185.0	Mm.2261	NM_008951	ENSMUSG00000005625	Psmd4	Af1|Mcb1|angiocidin	proteasome (prosome, macropain) 26S subunit, non-ATPase, 4	protein-coding	2.73304219544613	3.51583719222169	3.82066432428939	2.66304883471625	2.65416248943901	2.57314786956046	3.35203699775231	2.04750617569694	-0.922559877766514	0.192348804069884	0.670655636962211
Merged-chr16-91731915-3	chr16	91731821	91732021	+	563.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110276, intron 1 of 15)	intron (NM_001110276, intron 1 of 15)	2550.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123945455-3	chr5	123945352	123945552	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001134767, intron 5 of 12)	intron (NM_001134767, intron 5 of 12)	14763.0	NM_001134767	208908.0	Mm.243679	NM_001134767	ENSMUSG00000061882	Ccdc62	AI661708|G1-485-3|Gm150|repro29	coiled-coil domain containing 62	protein-coding	0.484342539861049	0.526144064928501	0.512784192111285	0.502261476187113	0.975968766574754	0.9754036355361	1.8036547466431	1.39466490741431	4.89068806231435	0.00274001284001937	0.0424592424601351
Merged-chr2-157371611-7	chr2	157371458	157371658	+	899.4285890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026968, intron 1 of 2)	ID_B1|SINE|B4	3964.0	NM_026968	69161.0	Mm.228619	NM_026968	ENSMUSG00000063019	Manbal	1810024K12Rik|AI836500	mannosidase, beta A, lysosomal-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126919456-5	chr8	126919361	126919561	+	692.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26460.0	NM_024214	67952.0	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32535215-4	chr2	32535102	32535302	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153560)	promoter-TSS (NM_153560)	-157.0	NM_153560	98952.0	Mm.4065	NM_153560	ENSMUSG00000039157	Fam102a	AI426465|C230093N12Rik|Eeig1	family with sequence similarity 102, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167591566-2	chr2	167591466	167591666	+	572.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40439.0	NM_001311146	66589.0	Mm.278783	NM_023230	ENSMUSG00000078923	Ube2v1	0610011J09Rik|AI256840|CROC-1|CROC1|D7Bwg1382e|UEV-1	ubiquitin-conjugating enzyme E2 variant 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-10874486-6	chr17	10874442	10874642	+	828.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001317726, intron 1 of 6)	intron (NM_001317726, intron 1 of 6)	34183.0	NM_016694	50873.0	Mm.311110	NM_016694	ENSMUSG00000023826	Park2	PRKN	Parkinson disease (autosomal recessive, juvenile) 2, parkin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-82032813-4	chr11	82032719	82032919	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2758.0	NM_011333	20296.0	Mm.290320	NM_011333	ENSMUSG00000035385	Ccl2	AI323594|HC11|JE|MCAF|MCP-1|MCP1|SMC-CF|Scya2|Sigje	chemokine (C-C motif) ligand 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-85154151-4	chr6	85154052	85154252	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16388.0	NM_011467	20751.0	Mm.28393	NM_011467	ENSMUSG00000033735	Spr	AA409688|Gm10328	sepiapterin reductase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-45575830-2	chr17	45575730	45575930	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-2569.0	NM_008302	15516.0	Mm.2180	NM_008302	ENSMUSG00000023944	Hsp90ab1	90kDa|AL022974|C81438|Hsp84|Hsp84-1|Hsp90|Hspcb	heat shock protein 90 alpha (cytosolic), class B member 1	protein-coding	0.270848239023036	-0.148837611364608	-0.152831269781058	0.121545087818273	0.280292724730305	-0.147933965861559	-0.151952563323364	-0.00383884662773937	-0.249230922076049	0.911725880191849	1
Merged-chr2-27263682-2	chr2	27263582	27263782	+	795.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_133905, exon 30 of 30)	non-coding (NR_133905, exon 30 of 30)	-16379.0	NM_138665	192166.0	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-93166242-5	chr10	93166161	93166361	+	704.47998	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146239, intron 1 of 16)	intron (NM_146239, intron 1 of 16)	3476.0	NR_035452	100316689.0		NR_035452	ENSMUSG00000089214	Mir1931	mir-1931|mmu-mir-1931	microRNA 1931	ncRNA	3.01587848231855	2.71800141886771	2.72710021277137	2.64874633260321	3.15158337198536	1.46171503800715	2.10185085307828	1.64249186834346	-0.953851038683723	0.279536776551213	0.782875234013061
Merged-chr10-95843401-4	chr10	95843309	95843509	+	994.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-97254.0	NM_001001932	216238.0	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-150391276-2	chr1	150391176	150391376	+	677.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357579, intron 1 of 13)	B1F|SINE|Alu	-1562.0	NM_133780	108989.0	Mm.174256	NM_133780	ENSMUSG00000006005	Tpr	2610029M07Rik|C77892	translocated promoter region, nuclear basket protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-49964876-2	chr16	49964776	49964976	+	640.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9046.0	NR_153658	100503490.0	Mm.72499	NR_153658		Gm19723	-	predicted gene, 19723	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-42645417-3	chr6	42645333	42645533	+	885.822205	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146174)	promoter-TSS (NM_146174)	-392.0	NM_146174	232748.0	Mm.279659	NM_146174	ENSMUSG00000029851	Tcaf2	Fam115c	TRPM8 channel-associated factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83571323-2	chr11	83571223	83571423	+	747.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	7313.0	NM_011338	20308.0	Mm.416125	NM_011338	ENSMUSG00000019122	Ccl9	CCF18|MRP-2|Scya10|Scya9	chemokine (C-C motif) ligand 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-112787750-2	chr13	112787650	112787850	+	592.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13027.0	NM_008903	19012.0	Mm.291029	NM_008247	ENSMUSG00000021759	Plpp1	Hic53|Hpic53|LPP-1|LPP1|PAP-2a|PAP2-alpha|PAP2a|Ppap2a|mPAP	phospholipid phosphatase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-69204221-2	chr3	69204121	69204321	+	702.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-18198.0	NM_027843	71619.0	Mm.98122	NM_027843	ENSMUSG00000098207	Arl14	9130014L17Rik|Arf7	ADP-ribosylation factor-like 14	protein-coding	-0.529144036621524	-0.582939998093613	-0.755327097659897	-0.757139133252158	-0.52358446109222	-0.578974375071705	-0.754806246926683	-0.756823691923989	0.0406816948403634	0.987783005659219	1
Merged-chr17-24428703-1	chr17	24428603	24428803	+	555.0	f1_balb.idr	intron (NM_010023, intron 2 of 6)	B1_Mus1|SINE|Alu	2020.0	NM_010023	13177.0	Mm.291743	NM_010023	ENSMUSG00000024132	Eci1	Dci|eci	enoyl-Coenzyme A delta isomerase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64385110-4	chr5	64385024	64385224	+	895.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	82818.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-36186586-3	chr4	36186462	36186662	+	778.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166000, intron 4 of 8)	intron (NM_001166000, intron 4 of 8)	-341358.0	NM_175516	242384.0	Mm.132507	NM_175516	ENSMUSG00000045083	Lingo2	B230217C06Rik|Lern3|Lrrn6c	leucine rich repeat and Ig domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-72961340-2	chr11	72961240	72961440	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001163336, exon 1 of 21)	5' UTR (NM_001163336, exon 1 of 21)	171.0	NM_001163337	53313.0	Mm.6306	NM_016745	ENSMUSG00000020788	Atp2a3	SERCA3b|Serca3	ATPase, Ca++ transporting, ubiquitous	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-130733330-2	chr2	130733230	130733430	+	639.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029432, intron 27 of 36)	intron (NM_029432, intron 27 of 36)	-35811.0	NM_001081162	269356.0	Mm.441391	NM_001081162	ENSMUSG00000074796	Slc4a11	AI503023|BTR1|NaBC1	solute carrier family 4, sodium bicarbonate transporter-like, member 11	protein-coding	-2.05752322593321	-2.15521190974092	-2.16307242109104	-2.16952927915413	-2.17938029103484	-2.15350850414045	-2.16129297361887	-2.16837350464794	-0.683654500252594	0.846597994014493	1
Merged-chr10-83448796-1	chr10	83448696	83448896	+	603.0	f0_balb.idr	Intergenic	Intergenic	85344.0	NM_153543	216188.0	Mm.263138	NM_153543	ENSMUSG00000020256	Aldh1l2	D330038I09Rik|mtFDH	aldehyde dehydrogenase 1 family, member L2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128546485-4	chr10	128546374	128546574	+	954.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134003, intron 2 of 2)	intron (NM_134003, intron 2 of 2)	1270.0	NM_134003	103284.0	Mm.68289	NM_134003	ENSMUSG00000039810	Zc3h10	AI790326	zinc finger CCCH type containing 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-49248152-4	chr13	49248088	49248288	+	765.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001360772, exon 1 of 4)	5' UTR (NM_001360772, exon 1 of 4)	106.0	NM_001360772	66329.0	Mm.34308	NM_025491	ENSMUSG00000021384	Susd3	1700017I11Rik|2810440J20Rik	sushi domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128549268-4	chr10	128549171	128549371	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018860)	promoter-TSS (NM_018860)	-103.0	NM_018860	67945.0	Mm.290786	NM_018860	ENSMUSG00000093674	Rpl41	1810055P16Rik|2210411K19Rik	ribosomal protein L41	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-63969828-3	chr5	63969749	63969949	+	750.888855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145923)	promoter-TSS (NM_145923)	-952.0	NM_145923	100532.0	Mm.243632	NM_145923	ENSMUSG00000047881	Rell1	AA536743	RELT-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52820497-4	chr13	52820408	52820608	+	918.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63303.0	NR_027893	105404.0	Mm.184173	NR_027893		BB123696	-	expressed sequence BB123696	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-62507198-3	chr10	62507082	62507282	+	937.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358965, intron 2 of 3)	ID_B1|SINE|B4	575.0	NM_011157	19073.0	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-53194281-1	chr19	53194181	53194381	+	551.0	f0_balb.idr	intron (NM_013758, intron 1 of 15)	intron (NM_013758, intron 1 of 15)	50284.0	NM_013758	27360.0	Mm.426080	NM_013758	ENSMUSG00000025026	Add3	AI463285|R75380	adducin 3 (gamma)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-84787950-4	chr18	84787844	84788044	+	814.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	43877.0	NR_155706	102641800.0		NR_155706		Gm38576	-	predicted gene, 38576	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-112016197-2	chr13	112016097	112016297	+	969.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME3|LINE|L1	148261.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141001427-2	chr7	141001327	141001527	+	826.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9317.0	NM_025378	66141.0	Mm.141021	NM_025378	ENSMUSG00000025492	Ifitm3	1110004C05Rik|Cd225|Cdw217|DSPA2b|Fgls|IP15|mil-1	interferon induced transmembrane protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-35124456-4	chr9	35124340	35124540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_027030)	TTS (NM_027030)	-7576.0	NM_009178	20443.0	Mm.275973	NM_009178	ENSMUSG00000032038	St3gal4	SIAT4-C|ST3Gal IV|ST3GalIV|Siat4c	ST3 beta-galactoside alpha-2,3-sialyltransferase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126798456-2	chr7	126798356	126798556	+	832.599976	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177307, intron 1 of 9)	intron (NM_001177307, intron 1 of 9)	722.0	NM_001177307	11674.0	Mm.275831	NM_007438	ENSMUSG00000030695	Aldoa	Aldo-1|Aldo1	aldolase A, fructose-bisphosphate	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-164275633-4	chr1	164275532	164275732	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029115)	promoter-TSS (NM_029115)	34.0	NM_029115	74895.0	Mm.167258	NM_029115	ENSMUSG00000026578	Ccdc181	4930455F23Rik|AI427889	coiled-coil domain containing 181	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-29547831-4	chr11	29547721	29547921	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028504)	promoter-TSS (NM_028504)	-129.0	NM_028504	73324.0	Mm.69388	NM_028504	ENSMUSG00000020461	Clhc1	1700034F02Rik	clathrin heavy chain linker domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-45436249-3	chr19	45436157	45436357	+	849.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360127, intron 2 of 13)	intron (NM_001360127, intron 2 of 13)	72523.0	NM_001360126	12234.0	Mm.119717	NM_009771	ENSMUSG00000025217	Btrc	Beta-Trcp1|E3RS-IkappaB|E3RSIkappaB|FWD1|Fbw1a|HOS|SCF b-TRCP|Slimb|b-TrCP|beta-TrCP	beta-transducin repeat containing protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67709832-2	chr10	67709732	67709932	+	791.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-137873.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118677498-2	chr9	118677398	118677598	+	954.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 11 of 27)	intron (NM_133721, intron 11 of 27)	-34194.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117323963-4	chr10	117323850	117324050	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31082.0	NM_013590	17110.0	Mm.177539	NM_013590	ENSMUSG00000069515	Lyz1	Lyz|Lyzf3|Lzp-s	lysozyme 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-54617993-4	chr14	54617861	54618061	+	967.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011186)	promoter-TSS (NM_011186)	34.0	NM_011186	19173.0	Mm.8911	NM_011186	ENSMUSG00000022193	Psmb5	-	proteasome (prosome, macropain) subunit, beta type 5	protein-coding	2.43089638789883	3.12837003341849	3.02613831641666	1.97925064927487	2.65021179455347	2.74433656502501	2.96248994203495	2.45303381741579	-0.0146857521342159	0.984203827208964	0.998431161219273
Merged-chr2-27540298-4	chr2	27540191	27540391	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	25144.0	NM_080848	140858.0	Mm.28265	NM_080848	ENSMUSG00000026917	Wdr5	2410008O07Rik|AA408785|AA960360|Big|Big-3	WD repeat domain 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-40019221-2	chr17	40019121	40019321	+	610.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus1|LINE|L1	68701.0	NM_001256051	100126775.0	Mm.471585	NM_001256051	ENSMUSG00000095886	Esp38	Gm21946	exocrine gland secreted peptide 38	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-129643332-4	chr3	129643171	129643371	+	878.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	81815.0	NM_001310737	13645.0	Mm.252481	NM_010113	ENSMUSG00000028017	Egf	AI790464	epidermal growth factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-136808847-4	chr6	136808727	136808927	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177688, exon 1 of 1)	3' UTR (NM_177688, exon 1 of 1)	579.0	NM_177688	232440.0	Mm.154564	NM_177688	ENSMUSG00000060032	H2afj	E130307C13	H2A histone family, member J	protein-coding	2.60501508564393	3.28515206779634	3.77418927587297	3.33949263875846	3.77722689115959	3.09133573013555	3.53768841450327	1.90130743006405	-0.0900480905045966	0.894743264128326	0.998431161219273
Merged-chr11-59596314-2	chr11	59596214	59596414	+	864.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6227.0	NM_146429	258421.0	Mm.377490	NM_146429	ENSMUSG00000048919	Olfr223	MOR256-30	olfactory receptor 223	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-100293891-2	chr2	100293791	100293991	+	664.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-1330857.0	NM_009020	19374.0	Mm.4988	NM_009020	ENSMUSG00000032864	Rag2	Rag-2	recombination activating gene 2	protein-coding	-2.18138529563533	-2.15523716995652	-2.1631445789866	-2.16963996020037	-2.05513010215571	-2.15352360143315	-2.16135451490766	-2.16847729006863	0.759018020146679	0.829933115115583	1
Merged-chr2-156864505-4	chr2	156864425	156864625	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026124, intron 1 of 3)	B4A|SINE|B4	1403.0	NM_026124	67388.0	Mm.29264	NM_026124	ENSMUSG00000027637	1110008F13Rik	AI316789	RIKEN cDNA 1110008F13 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70516519-3	chr11	70516418	70516618	+	925.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1902.0	NM_001013607	327956.0	Mm.244514	NM_001013607	ENSMUSG00000020830	Vmo1	Gm741	vitelline membrane outer layer 1 homolog (chicken)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-14931492-3	chr8	14931449	14931649	+	601.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037736, intron 4 of 27)	intron (NM_001037736, intron 4 of 27)	19886.0	NM_001037736	234094.0	Mm.240298	NM_172751	ENSMUSG00000071176	Arhgef10	6430549H08Rik|mKIAA0294	Rho guanine nucleotide exchange factor (GEF) 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-33315411-4	chr12	33315322	33315522	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033436, intron 1 of 7)	intron (NM_001033436, intron 1 of 7)	12907.0	NM_001033436	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-40439862-4	chr18	40439756	40439956	+	898.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026135, intron 1 of 1)	intron (NM_026135, intron 1 of 1)	181495.0	NM_026135	383348.0	Mm.76366	NM_026135	ENSMUSG00000051401	Kctd16	4930434H12Rik|Gm1267	potassium channel tetramerisation domain containing 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-9130576-2	chr15	9130476	9130676	+	683.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013787, intron 2 of 9)	intron (NM_013787, intron 2 of 9)	9878.0	NM_013787	27401.0	Mm.35584	NM_013787	ENSMUSG00000054115	Skp2	4930500A04Rik|FBXL1|FWD1|p45	S-phase kinase-associated protein 2 (p45)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-113556391-4	chr7	113556278	113556478	+	893.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_126544, intron 1 of 5)	intron (NR_126544, intron 1 of 5)	8609.0	NR_126544	69295.0	Mm.396150	NR_126544	ENSMUSG00000084984	Far1os	1700006P19Rik	fatty acyl CoA reductase 1, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-52278108-2	chr14	52278008	52278208	+	947.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172601, intron 2 of 7)	B1_Mus1|SINE|Alu	-1038.0	NM_023434	268741.0	Mm.246237	NM_023434	ENSMUSG00000016831	Tox4	5730589K01Rik|A630040M18|AA410149|LCP1	TOX high mobility group box family member 4	protein-coding	1.88755443822579	2.49361186853011	1.26513628351837	2.2331272529468	2.48362696169034	2.61401787095619	1.2721307579036	2.34918450975924	0.535898841134702	0.599816654875082	0.972662548474779
Merged-chr13-40944260-4	chr13	40944172	40944372	+	989.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133219, intron 1 of 2)	RMER10A|LTR|ERVL	26638.0	NM_133219	14538.0	Mm.314757	NM_008105	ENSMUSG00000021360	Gcnt2	5330430K10Rik|IGnT|IGnTA|IGnTB|IGnTC	glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-27200237-2	chr3	27200137	27200337	+	626.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 1 of 4)	B4A|SINE|B4	17233.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-155071230-3	chr2	155071108	155071308	+	689.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016661, intron 1 of 9)	L2|LINE|L2	3289.0	NM_016661	269378.0	Mm.330692	NM_016661	ENSMUSG00000027597	Ahcy	AA987153|AL024110|CuBP|SAHH	S-adenosylhomocysteine hydrolase	protein-coding	-1.18818405238703	-1.1621273909064	-1.17340543805306	-1.18266956177369	-0.508992984534732	-1.15968339104222	-1.17085233538681	-1.18101128805699	2.76775479490304	0.421927342186551	1
Merged-chr8-13874981-4	chr8	13874876	13875076	+	882.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181854, intron 1 of 1)	PB1|SINE|Alu	5335.0	NM_181854	101994.0	Mm.289346	NM_181854	ENSMUSG00000047710	Champ1	AA675043|AI116001|D8Ertd457e|D8Ertd569e|Zfp828|Znf828|mKIAA1802	chromosome alignment maintaining phosphoprotein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-84698921-3	chr17	84698809	84699009	+	815.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_104382, exon 13 of 14)	non-coding (NR_104382, exon 13 of 14)	15788.0	NM_026180	67470.0	Mm.26581	NM_026180	ENSMUSG00000024254	Abcg8	1300003C16Rik|AI114946|sterolin-2	ATP binding cassette subfamily G member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-8273729-1	chr15	8273629	8273829	+	543.0	f1_balb.idr	Intergenic	MTD|LTR|ERVL-MaLR	104623.0	NM_001162906	73692.0	Mm.164436	NM_001162906	ENSMUSG00000039801	2410089E03Rik	4732468D17Rik|Hug|Jbts17|b2b012Clo	RIKEN cDNA 2410089E03 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-163685955-2	chr2	163685855	163686055	+	603.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039390, intron 2 of 4)	intron (NM_001039390, intron 2 of 4)	-8082.0	NM_011106	18769.0	Mm.10091	NM_011106	ENSMUSG00000035268	Pkig	PKIgamma	protein kinase inhibitor, gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-103172854-4	chr3	103172770	103172970	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356330, intron 2 of 5)	RCHARR1|DNA|hAT-Charlie	1215.0	NM_001356331	68183.0	Mm.104919	NM_026602	ENSMUSG00000005687	Bcas2	6430539P16Rik|AI132645|C76366|C80030	breast carcinoma amplified sequence 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-33517427-5	chr8	33517448	33517648	+	828.299988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33237.0	NR_033589	628431.0	Mm.376526	NR_033589		Hmgb1-rs17	Hmg1-rs17	high mobility group box 1, related sequence 17	pseudo	2.20460947135647	2.05913506265735	2.67995255113931	1.93915999610447	1.99498572634278	2.79298122965295	1.62985009074468	2.53170806090485	0.149305198422069	0.865885758870614	0.998431161219273
Merged-chr1-87849499-4	chr1	87849375	87849575	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3812.0	NM_177646	227333.0	Mm.277217	NM_177646	ENSMUSG00000070738	Dgkd	AI841987|D330025K09|DGKdelta|dgkd-2	diacylglycerol kinase, delta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-111178102-6	chr10	111177986	111178186	+	832.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003717, intron 1 of 22)	intron (NM_001003717, intron 1 of 22)	13284.0	NM_175489	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-9210291-2	chr3	9210191	9210391	+	744.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-40276.0	NM_177660	229055.0	Mm.103262	NM_177660	ENSMUSG00000069114	Zbtb10	4832414A18|AU021107|RINZF	zinc finger and BTB domain containing 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-60813670-1	chr9	60813570	60813770	+	671.5	f0_balb.idr	intron (NM_001357408, intron 1 of 19)	intron (NM_001357408, intron 1 of 19)	19228.0	NM_001357407	72565.0	Mm.68819	NM_028283	ENSMUSG00000034485	Uaca	2700059D02Rik|nucling	uveal autoantigen with coiled-coil domains and ankyrin repeats	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-146299652-4	chr5	146299553	146299753	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359990, intron 11 of 12)	intron (NM_001359990, intron 11 of 12)	68403.0	NM_153599	264064.0	Mm.260576	NM_153599	ENSMUSG00000029635	Cdk8	-	cyclin-dependent kinase 8	protein-coding	-1.58994551673671	-1.55912852307891	-1.56844783632235	-1.57610299769523	-1.18549093183599	-1.55710898902261	-1.56633814807757	-1.57473272746952	1.78703309985663	0.610309988231842	1
Merged-chr9-70692172-2	chr9	70692072	70692272	+	761.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_007399, intron 1 of 15)	intron (NM_007399, intron 1 of 15)	13190.0	NM_007399	11487.0	Mm.3037	NM_007399	ENSMUSG00000054693	Adam10	1700031C13Rik|MADM|kuz|kuzbanian	a disintegrin and metallopeptidase domain 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-102495797-2	chr11	102495713	102495913	+	694.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159492, intron 6 of 7)	intron (NM_001159492, intron 6 of 7)	-25930.0	NM_010575	16399.0	Mm.26646	NM_010575	ENSMUSG00000034664	Itga2b	AI172977|CD41|CD41B|GpIIb|alphaIIb	integrin alpha 2b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-56466632-4	chr18	56466538	56466738	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026240, intron 1 of 13)	intron (NM_026240, intron 1 of 13)	34506.0	NM_026240	107022.0	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|Gramd2b|NS3TP2	GRAM domain containing 3	protein-coding	3.01124800404693	2.0333228210929	2.68325827476686	2.24288090611588	3.35285351056439	2.68113222763034	2.46655771999856	1.92263704068227	0.325647315152682	0.685923530036932	0.996533206832645
Merged-chr8-68191950-4	chr8	68191838	68192038	+	883.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-84590.0	NM_028182	72281.0	Mm.40974	NM_028182	ENSMUSG00000053886	Sh2d4a	2210402M20Rik|SH2A	SH2 domain containing 4A	protein-coding	2.13128574738827	2.61910364688901	2.42519136237846	2.64163650341975	2.14856932960758	2.52748982068592	2.44402932757206	1.37994855591316	-0.614488481626564	0.483737151815897	0.931207887927275
Merged-chr15-102247150-4	chr15	102247040	102247240	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001042727)	promoter-TSS (NM_001042727)	-640.0	NM_001042727	19411.0	Mm.1273	NM_011244	ENSMUSG00000001288	Rarg	Nr1b3|RAR-gamma|RARD|RARgamma2	retinoic acid receptor, gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97127235-4	chr11	97127105	97127305	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11874.0	NM_019507	57765.0	Mm.94519	NM_019507	ENSMUSG00000001444	Tbx21	TBT1|Tbet|Tblym	T-box 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-18846928-4	chr8	18846835	18847035	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026792, intron 1 of 7)	CpG	656.0	NM_026792	52123.0	Mm.24117	NM_026792	ENSMUSG00000031467	Agpat5	1110013A05Rik|D8Ertd319e	1-acylglycerol-3-phosphate O-acyltransferase 5 (lysophosphatidic acid acyltransferase, epsilon)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-66141700-1	chr5	66141600	66141800	+	645.0	f0_balb.idr	intron (NM_001127382, intron 2 of 7)	RMER15|LTR|ERVL	9278.0	NM_001291226	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	1.49781760491392	1.97327649222512	1.02452711342139	1.71970754657204	1.64031503921007	1.70263252029116	1.02966938715731	2.57976720082883	0.775406532824337	0.509265472951425	0.944258808801809
Merged-chr5-121872372-3	chr5	121872325	121872525	+	847.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007804, intron 17 of 22)	intron (NM_007804, intron 17 of 22)	23428.0	NM_001359949	231717.0	Mm.12654	NM_175474	ENSMUSG00000044134	Fam109a	A230106M15Rik|AU017694|IPIP27A|Ses1	family with sequence similarity 109, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-29436072-2	chr17	29435972	29436172	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-54973.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	1.94829094878321	0.952449769452589	1.54865487667724	2.55503441839062	1.42917225257724	0.957452506558794	0.934836398870689	1.88792580752127	-1.49883408512091	0.240475409202206	0.736569477638593
Merged-chr16-10783175-2	chr16	10783075	10783275	+	916.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001271603)	TTS (NM_001271603)	2361.0	NM_009896	12703.0	Mm.130	NM_009896	ENSMUSG00000038037	Socs1	Cish1|Cish7|JAB|SOCS-1|SSI-1	suppressor of cytokine signaling 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-32160826-2	chr14	32160726	32160926	+	748.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033988, intron 1 of 9)	intron (NM_001033988, intron 1 of 9)	939.0	NM_001033988	27057.0	Mm.371598	NM_019744	ENSMUSG00000056234	Ncoa4	ARA70|Rfg	nuclear receptor coactivator 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-60580058-4	chr1	60579959	60580159	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MamGypLTR1b|LTR|Gypsy	-13294.0	NM_001045513	77300.0	Mm.440325	NM_001045513	ENSMUSG00000026014	Raph1	9430025M21Rik|C730009O10Rik|Lpd	Ras association (RalGDS/AF-6) and pleckstrin homology domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-111805897-4	chr13	111805819	111806019	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011945, intron 1 of 19)	intron (NM_011945, intron 1 of 19)	3074.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4306409-4	chr19	4306299	4306499	+	935.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_130863)	promoter-TSS (NM_130863)	-177.0	NM_001290818	110355.0	Mm.254144	NM_130863	ENSMUSG00000024858	Grk2	Adrbk-1|Adrbk1|Bark-1|beta ARK|betaARK1	G protein-coupled receptor kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19790133-3	chr7	19790041	19790241	+	824.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161844, intron 5 of 10)	intron (NM_001161844, intron 5 of 10)	6668.0	NM_001161844	80794.0	Mm.81698	NM_023224	ENSMUSG00000040525	Cblc	2310076I21Rik|2310079L19Rik|Cbl3	Casitas B-lineage lymphoma c	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-98937930-3	chr10	98937819	98938019	+	732.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359507, intron 1 of 21)	intron (NM_001359507, intron 1 of 21)	22767.0	NM_026482	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-77911676-4	chr9	77911571	77911771	+	996.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5694.0	NM_134255	68801.0	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-104509982-2	chr8	104510002	104510202	+	603.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_180958)	promoter-TSS (NM_180958)	-215.0	NM_180958	320022.0	Mm.249775	NM_180958	ENSMUSG00000052616	Terb1	4930532D21Rik|BB085179|Ccdc79	telomere repeat binding bouquet formation protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-95514487-1	chr9	95514387	95514587	+	601.0	f0_c57.idr	Intergenic	MERVL-int|LTR|ERVL	-2491.0	NM_001357974	67958.0	Mm.292742	NM_026476	ENSMUSG00000032407	U2surp	2610101N10Rik|AU023006|Sr140	U2 snRNP-associated SURP domain containing	protein-coding	1.36767113297271	0.689151018593859	0.673037469952787	0.6602945802333	1.14767708933665	0.692724135300654	1.83473346040428	1.91951770990878	2.29762020463435	0.135455773817165	0.574816685071332
Merged-chr9-21616585-1	chr9	21616485	21616685	+	1000.0	f0_c57.idr	intron (NM_001357764, intron 1 of 34)	CpG	416.0	NM_001174078	20586.0	Mm.286593	NM_011417	ENSMUSG00000032187	Smarca4	BAF190A|Brg1|HP1-BP72|SNF2beta|SW1/SNF|b2b508.1Clo|b2b692Clo	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118360784-3	chr11	118360688	118360888	+	797.488892	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5377.0	NM_011594	21858.0	Mm.206505	NM_011594	ENSMUSG00000017466	Timp2	D11Bwg1104e|Timp-2	tissue inhibitor of metalloproteinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69923212-2	chr11	69923137	69923337	+	919.416626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1279.0	NM_001166593	276770.0	Mm.18026	NM_181582	ENSMUSG00000078812	Eif5a	AA410058|D19Wsu54e|Eif4d|Eif5a1|eIF-4D|eIF-5A|eIF-5A-1|eIF-5A1	eukaryotic translation initiation factor 5A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-104109643-4	chr13	104109551	104109751	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029447)	promoter-TSS (NM_029447)	-37.0	NM_029447	75805.0	Mm.127692	NM_029447	ENSMUSG00000021710	Nln	4930472G13Rik|C79345	neurolysin (metallopeptidase M3 family)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-46153820-4	chr18	46153715	46153915	+	904.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	45003.0	NM_001170855	28105.0	Mm.277382	NM_178872	ENSMUSG00000033949	Trim36	D18Wsu100e|haprin	tripartite motif-containing 36	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-134745823-2	chr5	134745723	134745923	+	587.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007925, intron 1 of 36)	intron (NM_007925, intron 1 of 36)	1500.0	NM_007925	13717.0	Mm.275320	NM_007925	ENSMUSG00000029675	Eln	AI385707|AI480567|E030024M20Rik	elastin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-106429325-4	chr4	106429247	106429447	+	931.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183225, intron 62 of 67)	intron (NM_183225, intron 62 of 67)	34978.0	NM_153565	100102.0	Mm.133268	NM_153565	ENSMUSG00000044254	Pcsk9	AI415265|AI747682|FH3|HCHOLA3|Narc1|PC9	proprotein convertase subtilisin/kexin type 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-8065892-4	chr10	8065804	8066004	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-109781.0	NM_138667	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	4.03958361869007	4.73864096980611	3.92747657732966	4.13618376439259	3.79062127276066	4.16175787590339	4.0958843833173	4.9035169528412	0.0838256213423033	0.851439179553079	0.998431161219273
Merged-chr1-34466551-2	chr1	34466451	34466651	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011206, intron 5 of 14)	B3A|SINE|B2	6805.0	NM_011206	19253.0	Mm.361	NM_011206	ENSMUSG00000026126	Ptpn18	FLP1|HSCF|PTP-HSCF|PTP-K1|Ptpk1	protein tyrosine phosphatase, non-receptor type 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-26642415-2	chr14	26642315	26642515	+	780.916687	f1_balb.idr|f1_c57bl6.idr	intron (NM_007479, intron 1 of 5)	B1_Mus1|SINE|Alu	4281.0	NM_007479	11843.0	Mm.297768	NM_007479	ENSMUSG00000021877	Arf4	AA407803	ADP-ribosylation factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117330918-2	chr11	117330818	117331018	+	642.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017380)	promoter-TSS (NM_017380)	-797.0	NM_017380	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5493959-4	chr17	5493840	5494040	+	975.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	1340.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-25557260-2	chr15	25557160	25557360	+	803.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65290.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-117128004-2	chr13	117127904	117128104	+	799.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2021.0	NR_046023	623312.0	Mm.131279	NR_046023	ENSMUSG00000114792	Gm6416	-	predicted gene 6416	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-25617638-2	chr2	25617538	25617738	+	590.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029859)	promoter-TSS (NM_029859)	40.0	NM_029859	77058.0	Mm.478493	NM_029859	ENSMUSG00000026940	Ccdc183	4921530D09Rik|Cccd183|Kiaa1984	coiled-coil domain containing 183	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-9646555-1	chr4	9646455	9646655	+	1000.0	f1_c57bl6.idr	intron (NM_001290367, intron 1 of 22)	intron (NM_001290367, intron 1 of 22)	-2838.0	NM_001177852	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-63967005-2	chr5	63966905	63967105	+	995.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145923, intron 1 of 6)	intron (NM_145923, intron 1 of 6)	1892.0	NM_145923	100532.0	Mm.243632	NM_145923	ENSMUSG00000047881	Rell1	AA536743	RELT-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89385695-2	chr3	89385595	89385795	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001355206, exon 2 of 4)	exon (NM_001355206, exon 2 of 4)	1976.0	NM_001355212	22724.0	Mm.262184	NM_009565	ENSMUSG00000028042	Zbtb7b	Thpok|Zfp67|c-Krox	zinc finger and BTB domain containing 7B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-105802015-6	chr3	105801918	105802118	+	994.694458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145541)	promoter-TSS (NM_145541)	-637.0	NM_145541	109905.0	Mm.101922	NM_145541	ENSMUSG00000068798	Rap1a	AI848598|G-22K|Krev-1|Rap1	RAS-related protein 1a	protein-coding	0.869250343791832	1.8861610383131	1.12336870897509	0.891663761361002	1.67137415931271	1.52308096115425	1.83014782630851	1.42143828452334	1.20300218210579	0.351131998720407	0.851820510089169
Merged-chr14-118594664-4	chr14	118594537	118594737	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163676, intron 18 of 29)	intron (NM_001163676, intron 18 of 29)	-2165.0	NR_105815	102465208.0		NR_105815	ENSMUSG00000098433	Mir6391	Gm27914|mmu-mir-6391	microRNA 6391	ncRNA	-0.0843569071945516	0.447991461036527	-0.0724088448620465	-0.0768888850616047	-0.0832434755649996	0.696411793179227	0.277742245396552	-0.0761052531003901	1.25026845608216	0.582814236781507	1
Merged-chr19-33120533-3	chr19	33120438	33120638	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36574.0	NR_039552	100628575.0		NR_039552	ENSMUSG00000106278	Mir3970	mmu-mir-3970|mu-mir-3970	microRNA 3970	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-32953977-4	chr12	32953895	32954095	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_044986)	promoter-TSS (NR_044986)	50.0	NM_013635	19027.0	Mm.246304	NM_013635	ENSMUSG00000020570	Sypl	AI314763|AI604763|D12Ertd446e|PanI|Pphn|Sypl1	synaptophysin-like protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-137747621-3	chr5	137747509	137747709	+	967.2666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029805, exon 2 of 6)	exon (NM_029805, exon 2 of 6)	1640.0	NM_029805	78829.0	Mm.286399	NM_023910	ENSMUSG00000029723	Tsc22d4	0610009M14Rik|1700023B23Rik|AI415410|Thg-1pit|Tilz2	TSC22 domain family, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67566373-4	chr10	67566254	67566454	+	973.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3654.0	NR_155445	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-22351411-1	chr16	22351311	22351511	+	562.75	f0_balb.idr	Intergenic	L1MC3|LINE|L1	56423.0	NR_153764	100043507.0		NR_153764		Gng5-ps	Gm15776	G protein subunit gamma 5, pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-48390089-3	chr9	48389980	48390180	+	804.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172921, intron 4 of 8)	intron (NM_172921, intron 4 of 8)	28039.0	NM_172921	244853.0	Mm.325522	NM_172921	ENSMUSG00000044229	Nxpe4	C130036J11|D930028F11Rik|Fam55d	neurexophilin and PC-esterase domain family, member 4	protein-coding	2.96300185870725	3.0234726720242	2.28424537794568	2.5195195072809	1.85399900940043	1.19302329090293	1.15624935442932	1.12319150804693	-3.58343735127721	0.00106821890961421	0.0204736269609446
Merged-chr4-66221359-2	chr4	66221259	66221459	+	636.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_207109, intron 2 of 22)	intron (NM_207109, intron 2 of 22)	183124.0	NM_019514	56079.0	Mm.445312	NM_019514	ENSMUSG00000028373	Astn2	1d8|Astnl|bM452J22.1	astrotactin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-61066127-2	chr10	61066027	61066227	+	637.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23204.0	NM_025273	13180.0	Mm.39473	NM_025273	ENSMUSG00000020098	Pcbd1	Dcoh|Pcbd|Pcd|Phs	pterin 4 alpha carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-110372001-4	chr11	110371898	110372098	+	733.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27104.0	NM_001356345	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-80939985-2	chr12	80939863	80940063	+	629.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	5436.0	NR_045057	100504661.0	Mm.442322	NR_045057	ENSMUSG00000112880	Gm20337	-	predicted gene, 20337	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102445643-4	chr12	102445552	102445752	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5839.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-116135296-2	chr4	116135196	116135396	+	700.900024	f1_balb.idr|f1_c57bl6.idr	intron (NR_131048, intron 1 of 2)	intron (NR_131048, intron 1 of 2)	9320.0	NM_026547	68075.0	Mm.132803	NM_026547	ENSMUSG00000028701	Lurap1	1520402A15Rik|Lrp35a	leucine rich adaptor protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-13023260-4	chr7	13023167	13023367	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011588)	promoter-TSS (NM_011588)	-885.0	NM_011588	21849.0	Mm.15701	NM_011588	ENSMUSG00000005566	Trim28	AA408787|KAP-1|KRIP-1|MommeD9|Tif1b|Tif1beta	tripartite motif-containing 28	protein-coding	2.2369827442614	3.20539336370108	2.28908859282715	2.58821016874532	2.57056054420699	2.3868987739063	3.12369264450085	1.69494111476182	-0.183810678354056	0.821595990694781	0.998431161219273
Merged-chr9-118614010-2	chr9	118613910	118614110	+	848.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 1 of 27)	intron (NM_133721, intron 1 of 27)	7301.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-32943222-2	chr19	32943122	32943322	+	569.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	185645.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-11818037-2	chr19	11817943	11818143	+	974.5	f0_balb.idr|f0_c57.idr	intron (NM_011502, intron 1 of 10)	MIRb|SINE|MIR	1360.0	NM_001286543	20908.0	Mm.272264	NM_011502	ENSMUSG00000041488	Stx3	Syn-3	syntaxin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-63860874-2	chr14	63860774	63860974	+	983.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028228, intron 1 of 6)	intron (NM_028228, intron 1 of 6)	562.0	NM_028228	72400.0	Mm.379214	NM_028228	ENSMUSG00000021958	Pinx1	2210403I16Rik|2610028A01Rik|67-11-3|AU024023|LPTS|LPTS1	PIN2/TERF1 interacting, telomerase inhibitor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30563727-4	chr7	30563620	30563820	+	947.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025498)	promoter-TSS (NM_025498)	380.0	NM_170760	233073.0	Mm.34790	NM_170760	ENSMUSG00000078765	U2af1l4	AA407033|AF419339|AI451269|AW553050|U2af26	U2 small nuclear RNA auxiliary factor 1-like 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-53101297-2	chr9	53101197	53101397	+	626.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_029936, intron 17 of 17)	intron (NM_029936, intron 17 of 17)	146815.0	NM_029936	77591.0	Mm.133560	NM_029936	ENSMUSG00000053289	Ddx10	4632415A01Rik|AI646054	DEAD (Asp-Glu-Ala-Asp) box polypeptide 10	protein-coding	-0.378862047495912	-0.364870876367801	-0.369445668913775	0.367602648756389	-0.377986272553064	-0.363840813843051	-0.368435933903431	0.185811407421716	-0.553727429006611	0.835242855312051	1
Merged-chr2-73397122-4	chr2	73397028	73397228	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10648.0	NM_001276444	68526.0	Mm.451014	NM_001080707	ENSMUSG00000041762	Gpr155	1110017O10Rik|DEPDC3|F730029F15Rik|PGR22	G protein-coupled receptor 155	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-32182617-2	chr11	32182517	32182717	+	621.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17662.0	NM_001134458	16199.0	Mm.384	NM_008374	ENSMUSG00000020279	Il9r	-	interleukin 9 receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-132569007-4	chr7	132568918	132569118	+	913.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016978, intron 2 of 9)	intron (NM_016978, intron 2 of 9)	7380.0	NM_016978	18242.0	Mm.13694	NM_016978	ENSMUSG00000030934	Oat	AI194874|rhg	ornithine aminotransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-86114404-4	chr17	86114314	86114514	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030133, intron 10 of 20)	Lx8|LINE|L1	30761.0	NM_030133	78586.0	Mm.146236	NM_030133	ENSMUSG00000024135	Srbd1	AI461933|C85414|D530025C17Rik	S1 RNA binding domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-117020727-4	chr13	117020625	117020825	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081009, intron 3 of 26)	intron (NM_001081009, intron 3 of 26)	4791.0	NM_001081009	52552.0	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-3495670-2	chr18	3495570	3495770	+	738.200012	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12287.0	NM_026505	68010.0	Mm.284863	NM_026505	ENSMUSG00000024232	Bambi	2610003H06Rik	BMP and activin membrane-bound inhibitor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-21953077-4	chr3	21952984	21953184	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-123568.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35419754-2	chr17	35419716	35419916	+	669.583374	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR31B2|LTR|ERVK	-5031.0	NM_023124	15019.0	Mm.486287	NM_023124		H2-Q8	H-2Q8|MMS10-T|Ms10t|Qa-2|Qa-8|Qa8	histocompatibility 2, Q region locus 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-24616771-4	chr13	24616656	24616856	+	689.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178658, intron 1 of 13)	intron (NM_178658, intron 1 of 13)	2150.0	NM_178658	193385.0	Mm.217319	NM_029679	ENSMUSG00000036006	Ripor2	Fam65b	RHO family interacting cell polarization regulator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-103333889-4	chr15	103333777	103333977	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013866, intron 1 of 7)	intron (NM_013866, intron 1 of 7)	461.0	NM_001356627	29813.0	Mm.14099	NM_013866	ENSMUSG00000000552	Zfp385a	Hzf|Zfp385|Znf385a	zinc finger protein 385A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-57921568-4	chr15	57921477	57921677	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081396, intron 3 of 20)	Lx9|LINE|L1	9378.0	NM_001356310	210544.0	Mm.390835	NM_199300	ENSMUSG00000022364	Tbc1d31	4B3|D330013L20Rik|Gm85|Wdr67	TBC1 domain family, member 31	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-70194825-4	chr9	70194744	70194944	+	863.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-12506.0	NM_181072	71602.0	Mm.249311	NM_181072	ENSMUSG00000032220	Myo1e	2310020N23Rik|9130023P14Rik|AA407778|myosin-1e|myr 3	myosin IE	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-55380206-4	chr15	55380103	55380303	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181277, intron 10 of 47)	intron (NM_181277, intron 10 of 47)	72453.0	NM_181277	12818.0	Mm.297859	NM_181277	ENSMUSG00000022371	Col14a1	5730412L22Rik|AW108078	collagen, type XIV, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25787121-4	chr7	25787017	25787217	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009465, intron 2 of 19)	MIR|SINE|MIR	1616.0	NM_001190974	26362.0	Mm.4128	NM_009465	ENSMUSG00000002602	Axl	AI323647|Ark|Tyro7|Ufo	AXL receptor tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-21847793-5	chr14	21847674	21847874	+	873.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_176925, exon 1 of 3)	5' UTR (NM_176925, exon 1 of 3)	196.0	NM_176925	319486.0	Mm.390671	NM_176925	ENSMUSG00000090564	A430057M04Rik	-	RIKEN cDNA A430057M04 gene	protein-coding	1.73821616960862	1.83599923430755	1.05089102059959	1.43190086409282	1.51717962428004	1.98034599261767	2.37533631889158	1.2570794584598	0.924786644911052	0.411630262723015	0.894597257730009
Merged-chr11-3371444-4	chr11	3371348	3371548	+	830.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361623)	promoter-TSS (NM_001361623)	-44.0	NM_173053	16886.0	Mm.124176	NM_010718	ENSMUSG00000020451	Limk2	Limk-2|whe	LIM motif-containing protein kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-8672195-4	chr16	8672099	8672299	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025821)	promoter-TSS (NM_025821)	-46.0	NM_025821	52502.0	Mm.142095	NM_025821	ENSMUSG00000008393	Carhsp1	1200011K09Rik|Crhsp-24|D16Ertd465e	calcium regulated heat stable protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-104441222-2	chr11	104441122	104441322	+	898.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359634, intron 2 of 14)	intron (NM_001359634, intron 2 of 14)	1069.0	NM_001081045	76719.0	Mm.136418	NM_001081045	ENSMUSG00000018412	Kansl1	1700081L11Rik|9430041J06Rik|mKIAA1267	KAT8 regulatory NSL complex subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-48285481-2	chr18	48285381	48285581	+	554.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17B|LTR|ERVK	240146.0	NM_001025388	433182.0	Mm.70666	NM_001025388	ENSMUSG00000059040	Eno1b	EG433182|Eno1|Gm5506	enolase 1B, retrotransposed	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117192908-2	chr11	117192808	117193008	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2B2|LTR|ERVL	-6753.0	NM_001113486	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-86833936-4	chr12	86833850	86834050	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50864.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25788774-4	chr7	25788665	25788865	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001190974)	promoter-TSS (NM_001190974)	-32.0	NM_001190975	26362.0	Mm.4128	NM_009465	ENSMUSG00000002602	Axl	AI323647|Ark|Tyro7|Ufo	AXL receptor tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-164877971-3	chr2	164877884	164878084	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1384.0	NM_146129	228866.0	Mm.241134	NM_146129	ENSMUSG00000039849	Pcif1	2310022K11Rik|C20orf67|F730014I05Rik	PDX1 C-terminal inhibiting factor 1	protein-coding	-2.18292257394068	-2.15545247547656	-2.03304972317742	-2.17058342868585	-2.18099422382073	-2.1536522739386	-2.16187909550322	-2.16936197735154	-0.683654500252594	0.846597994014493	1
Merged-chr9-21316981-4	chr9	21316878	21317078	+	998.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-3741.0	NM_001359227	68682.0	Mm.148425	NM_152808	ENSMUSG00000057193	Slc44a2	1110028E10Rik|CTL2	solute carrier family 44, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-143844629-1	chr2	143844529	143844729	+	583.5	f0_balb.idr	intron (NM_001291061, intron 4 of 7)	MLT1A1|LTR|ERVL-MaLR	18544.0	NM_009751	12075.0	Mm.275937	NM_009751	ENSMUSG00000027420	Bfsp1	CP95	beaded filament structural protein 1, in lens-CP94	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-150833264-2	chr2	150833177	150833377	+	546.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_151505, intron 12 of 12)	intron (NR_151505, intron 12 of 12)	9293.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99971913-2	chr15	99971813	99972013	+	894.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001284523)	promoter-TSS (NM_001284523)	-867.0	NM_001024526	207214.0	Mm.28811	NM_001024526	ENSMUSG00000023025	Larp4	DXErtd793|DXErtd793e	La ribonucleoprotein domain family, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-35051696-4	chr7	35051610	35051810	+	986.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009884, intron 1 of 1)	intron (NM_009884, intron 1 of 1)	4856.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91976206-2	chr2	91976109	91976309	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-12646.0	NM_138306	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	-0.884151943040017	-0.86624766296593	-0.874346483115882	-0.877999885265216	-0.883229761593409	-0.862865047594633	0.225856448367219	-0.877358843395171	3.5762970005776	0.2292649794022	1
Merged-chr2-37704764-2	chr2	37704664	37704864	+	615.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16480.0	NR_039590	100628597.0		NR_039590	ENSMUSG00000092958	Mir5128	mir-5128|mmu-mir-5128|mu-mir-5128	microRNA 5128	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-97024984-1	chr5	97024884	97025084	+	583.0	f1_c57bl6.idr	intron (NM_080708, intron 1 of 15)	intron (NM_080708, intron 1 of 15)	27295.0	NM_080708	140780.0	Mm.281490	NM_080708	ENSMUSG00000034663	Bmp2k	4933417M22Rik|AA673486|AV128808|BIKE	BMP2 inducible kinase	protein-coding	0.774027917729707	1.04631031181173	0.385028303069206	0.378445824317463	0.369070111041882	0.606870738940915	0.581860624842255	1.23842222160394	0.364455674204961	0.833870796160271	1
Merged-chr5-121220896-2	chr5	121220796	121220996	+	932.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_181421, intron 1 of 75)	CpG	677.0	NM_181421	269700.0	Mm.184589	NM_181421	ENSMUSG00000042744	Hectd4	A130010L24|AU042671|BC019639|EG545802|Gm15800|mKIAA0614	HECT domain E3 ubiquitin protein ligase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-103830881-4	chr3	103830787	103830987	+	877.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13D2|LTR|ERVK	-1809.0	NM_001142959	229672.0	Mm.297245	NM_001142959	ENSMUSG00000044165	Bcl2l15	Bfk|Gm566	BCLl2-like 15	protein-coding	-0.159575428902353	-0.610187827292597	-0.613553296959403	-0.616142918686652	-0.062413005932852	-0.609427817933545	-0.612811884975486	-0.615690957529907	0.356090971337642	0.902258025932581	1
Merged-chr11-106153088-2	chr11	106152988	106153188	+	824.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011947, intron 15 of 15)	B4A|SINE|B4	6839.0	NM_001356459	67803.0	Mm.21687	NM_172397	ENSMUSG00000040699	Limd2	0610025L06Rik|AI413966	LIM domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-77743734-4	chr18	77743646	77743846	+	945.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-10276.0	NR_155289	105246501.0	Mm.403904	NR_155289		A330094K24Rik	-	RIKEN cDNA A330094K24 gene	ncRNA	-1.18378942727406	-1.15669478905697	-0.457913181653105	-1.17806440097404	-1.18323730008524	-1.15415234459186	-1.16577117532349	-1.17633933179771	-2.81844548480871	0.412768592413622	1
Merged-chr3-89350054-4	chr3	89349966	89350166	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009614)	promoter-TSS (NM_009614)	-38.0	NM_009614	11490.0	Mm.274049	NM_009614	ENSMUSG00000028041	Adam15	AD56|MDC15	a disintegrin and metallopeptidase domain 15 (metargidin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-24039592-4	chr18	24039496	24039696	+	719.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18783.0	NM_021559	59057.0	Mm.417427	NM_021559	ENSMUSG00000051469	Zfp24	3526401F17Rik|5033419P20Rik|AI480505|AI642085|AL024422|KOX17|ZF-12|Zfp191|Znf24	zinc finger protein 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118868949-4	chr9	118868839	118869039	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 9 of 13)	intron (NM_001113514, intron 9 of 13)	-57597.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-42219910-2	chr15	42219810	42220010	+	805.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR26_Mus|LTR|ERVK	-350190.0	NM_175456	223513.0	Mm.148913	NM_175456	ENSMUSG00000042895	Abra	C130068O12Rik|STARS	actin-binding Rho activating protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-8983266-3	chr3	8983173	8983373	+	870.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	-19127.0	NM_001025261	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	1.79428069480535	1.18947295676409	0.868188841393501	0.84542608374421	2.09804785047324	1.63562794853572	0.874531511523634	2.96279531948861	2.34452841852834	0.0653624608111503	0.383044027098102
Merged-chr6-42860491-4	chr6	42860383	42860583	+	762.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22600.0	NM_147064	259067.0	Mm.451673	NM_147064	ENSMUSG00000049168	Olfr449	GA_x6K02T2P3E9-4722003-4721068|MOR103-1	olfactory receptor 449	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-128969550-2	chr4	128969450	128969650	+	624.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-7095.0	NM_001301841	242669.0	Mm.215814	NM_172875	ENSMUSG00000028789	Azin2	4933429I20Rik|Adc|Azi2|B930082O19|ODC-p|Odcp	antizyme inhibitor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-134119929-1	chr4	134119829	134120029	+	600.0	f0_c57.idr	intron (NM_026257, intron 8 of 14)	intron (NM_026257, intron 8 of 14)	8824.0	NM_080559	73723.0	Mm.22240	NM_080559	ENSMUSG00000028843	Sh3bgrl3	1110004L05Rik|AU022188	SH3 domain binding glutamic acid-rich protein-like 3	protein-coding	2.06710819726431	2.43602965397238	1.23707950859715	1.80261253992843	1.39545834588641	2.08742312452689	2.46636328928948	2.47382066853145	0.536370307098581	0.596402983742075	0.971586575449917
Merged-chr6-122928869-4	chr6	122928773	122928973	+	777.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199311, intron 3 of 5)	intron (NM_199311, intron 3 of 5)	7025.0	NM_199311	269799.0	Mm.297275	NM_199311	ENSMUSG00000049037	Clec4a1	BC049354|Dcir4	C-type lectin domain family 4, member a1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-78159289-4	chr11	78159178	78159378	+	978.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009423, exon 7 of 7)	3' UTR (NM_009423, exon 7 of 7)	6272.0	NM_009423	22032.0	Mm.390418	NM_009423	ENSMUSG00000017386	Traf4	A530032M13Rik|CART1|msp2	TNF receptor associated factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-123931159-2	chr6	123931059	123931259	+	877.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPEY4_LTR|LTR|ERVK	-77969.0	NM_001104641	545874.0	Mm.347595	NM_001104641	ENSMUSG00000094672	Vmn2r25	EG545874	vomeronasal 2, receptor 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-29549265-4	chr17	29549170	29549370	+	861.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198647)	promoter-TSS (NM_198647)	323.0	NM_001162901	71138.0	Mm.158581	NM_001162901	ENSMUSG00000079580	Tmem217	4933413N12Rik|EG622644	transmembrane protein 217	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83064142-4	chr11	83064041	83064241	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011408)	promoter-TSS (NM_011408)	-971.0	NM_011408	20556.0	Mm.278689	NM_011408	ENSMUSG00000072620	Slfn2	Shlf2	schlafen 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-73948941-4	chr17	73948916	73949116	+	868.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011723, intron 1 of 35)	intron (NM_011723, intron 1 of 35)	1180.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115190561-4	chr11	115190450	115190650	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033393, intron 2 of 9)	RMER17C2|LTR|ERVK	3063.0	NM_001033393	320534.0	Mm.260587	NM_001033393	ENSMUSG00000045980	Tmem104	C630005D06Rik|mFLJ00021	transmembrane protein 104	protein-coding	5.31176130887859	5.53723267860907	4.43830767595548	5.49942835846004	4.42169209096227	3.70081324649268	3.05691565262999	4.75729091940518	-1.36209374281293	0.00171913078117063	0.0299749410221188
Merged-chr17-26538241-4	chr17	26538146	26538346	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23266.0	NM_026170	67458.0	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-90870539-4	chr8	90870447	90870647	+	953.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177224, intron 2 of 39)	intron (NM_177224, intron 2 of 39)	41712.0	NM_177224	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	0.481856604894961	0.237941441763428	0.791441446544259	0.227014001717724	0.695187617484273	0.23933266232702	0.802523773108261	0.227845057636373	0.396558692922294	0.839297399374846	1
Merged-chr16-24643177-4	chr16	24643075	24643275	+	739.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 5 of 12)	intron (NM_178665, intron 5 of 12)	-78680.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-90212872-2	chr3	90212772	90212972	+	825.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001293741)	promoter-TSS (NM_001293741)	775.0	NM_001190258	100043813.0	Mm.270283	NM_001190258	ENSMUSG00000050621	Rps27rt	Gm9846|Rps27l2	ribosomal protein S27, retrogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-133636907-4	chr7	133636808	133637008	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178115)	promoter-TSS (NM_178115)	-767.0	NM_178115	214764.0	Mm.174044	NM_145995	ENSMUSG00000039990	Edrf1	2700050L05Rik|AU022667|AW558805	erythroid differentiation regulatory factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-103100651-2	chr14	103100551	103100751	+	681.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-1085.0	NM_001360342	50789.0	Mm.214746	NM_015822	ENSMUSG00000022124	Fbxl3	AU041772|AW212966|FBK|Fbl3a|Fbxl3a|Ovtm|Play68	F-box and leucine-rich repeat protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101628602-2	chr7	101628498	101628698	+	615.5	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-35170.0	NM_009191	20480.0	Mm.3990	NM_009191	ENSMUSG00000001829	Clpb	AL118244|Skd3	ClpB caseinolytic peptidase B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-150915355-4	chr2	150915304	150915504	+	886.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027014, intron 2 of 6)	intron (NM_027014, intron 2 of 6)	5810.0	NM_001163476	69270.0	Mm.271603	NM_027014	ENSMUSG00000027454	Gins1	2810418N01Rik|Gins4|PSF1|mKIAA0186	GINS complex subunit 1 (Psf1 homolog)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-116086465-3	chr9	116086329	116086529	+	886.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	88934.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	-1.19347504235878	-1.00365106334293	-1.17951825145992	-1.02769816535136	-1.19303768315813	-1.1667316425381	-1.17713919494563	-0.885301580417922	0.00135439137597937	0.999653259911004	1
Merged-chr11-120048295-1	chr11	120048195	120048395	+	654.666687	f1_balb.idr	Intergenic	Intergenic	-1150.0	NM_007377	11302.0	Mm.6826	NM_007377	ENSMUSG00000025375	Aatk	AATYK|aatyk1|mKIAA0641	apoptosis-associated tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-99519279-3	chr6	99519196	99519396	+	678.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347345, intron 1 of 19)	intron (NM_001347345, intron 1 of 19)	1697.0	NM_001347345	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-13027716-3	chr15	13027610	13027810	+	678.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_007666)	TTS (NM_007666)	145965.0	NM_007666	12563.0	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	2.33753939156605	3.63983938731918	2.55653585269399	3.49371513407718	3.27568392952721	2.49421274507658	4.07981996272766	3.57833604287821	0.562964960702916	0.399145460168831	0.885176145862419
Merged-chr16-93839296-1	chr16	93839196	93839396	+	595.0	f0_c57.idr	intron (NM_001045529, intron 1 of 16)	RMER6D|LTR|ERVK	7175.0	NM_001045529	338467.0	Mm.287329	NM_001045529	ENSMUSG00000039456	Morc3	1110051N18Rik|AI452146|BF318192|D16Jhu32e|NXP2|Zcwcc3	microrchidia 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30301035-1	chr7	30300935	30301135	+	760.0	f1_balb.idr	intron (NM_001360764, intron 7 of 13)	(TTTTG)n|Simple_repeat|Simple_repeat	-7718.0	NM_198027	233065.0	Mm.276277	NM_198027	ENSMUSG00000042831	Alkbh6	AI839550|Abh6|C130099A02	alkB homolog 6	protein-coding	2.08901047465752	2.95823112111865	2.85525541757336	3.06691003917124	2.64534606714393	4.0682994026975	2.30138362107439	3.24602373262003	0.781617173776525	0.280560776933174	0.783412873231201
Merged-chr13-49252317-4	chr13	49252206	49252406	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-3600.0	NM_028340	66329.0	Mm.34308	NM_025491	ENSMUSG00000021384	Susd3	1700017I11Rik|2810440J20Rik	sushi domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-60949257-2	chr19	60949176	60949376	+	594.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_018869, intron 1 of 15)	intron (NM_018869, intron 1 of 15)	59527.0	NM_018869	14773.0	Mm.279400	NM_018869	ENSMUSG00000003228	Grk5	Gprk5	G protein-coupled receptor kinase 5	protein-coding	0.269188184919386	-0.0885331313880513	0.572263848509289	-0.0974562613935564	-0.10294615656409	-0.0873973629995422	0.368227159407325	-0.096777505068292	-1.25444112769916	0.58930357302377	1
Merged-chr9-63612165-4	chr9	63612078	63612278	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151671, intron 1 of 9)	intron (NR_151671, intron 1 of 9)	9532.0	NR_151671	66939.0	Mm.34338	NM_025857	ENSMUSG00000037257	Aagab	2310007F21Rik|p34	alpha- and gamma-adaptin binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-143004917-2	chr7	143004817	143005017	+	712.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001128080)	promoter-TSS (NM_001128080)	-129.0	NM_001128080	27027.0	Mm.28172	NM_020286	ENSMUSG00000000244	Tspan32	AW208513|Art-1|BB235973|D7Wsu37e|Phemx|Tssc6	tetraspanin 32	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-24713063-2	chr5	24712963	24713163	+	630.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081441, intron 4 of 5)	intron (NM_001081441, intron 4 of 5)	17617.0	NM_001081441	269633.0	Mm.392539	NM_026621	ENSMUSG00000055235	Wdr86	2810046M22Rik|BC059069	WD repeat domain 86	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-15685386-4	chr9	15685278	15685478	+	904.1416630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24360.0	NM_001357566	234967.0	Mm.138815	NM_172289	ENSMUSG00000043885	Slc36a4	6330573I15Rik|PAT4	solute carrier family 36 (proton/amino acid symporter), member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-51539854-3	chr1	51539758	51539958	+	840.2333369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151621, intron 3 of 3)	intron (NR_151621, intron 3 of 3)	56860.0	NR_151621	100045066.0	Mm.404734	NR_151621		Gm17767	-	predicted gene, 17767	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-30469425-2	chr6	30469325	30469525	+	644.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8440.0	NR_131049	69337.0	Mm.396168	NR_131049	ENSMUSG00000085470	1700012C14Rik	-	RIKEN cDNA 1700012C14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-148713688-2	chr4	148713578	148713778	+	677.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	70361.0	NM_001085505	230909.0	Mm.332067	NM_001085505	ENSMUSG00000070577	Gm572	b2b1167Clo	predicted gene 572	protein-coding	-0.617562959291713	-0.605636089756238	-0.609537652427714	-0.612551742938559	-0.463529287219971	0.15433938722428	-0.419488149240491	-0.612024941786714	3.45374686916108	0.178373026888698	1
Merged-chr17-45555610-4	chr17	45555506	45555706	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001304956)	promoter-TSS (NM_001304956)	-94.0	NM_008690	18037.0	Mm.57043	NM_008690	ENSMUSG00000023947	Nfkbie	I-kappa-B-epsilon|IKBE|IkB-E|NF-kappa-BIE|ikB-epsilon	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, epsilon	protein-coding	3.14241869615748	1.58958939856573	3.41095355363238	1.99444898834734	3.58568080923873	2.37179760131108	4.06306150637112	3.08874332529764	1.09226216125241	0.162029132479392	0.623213752294964
Merged-chr19-7064784-4	chr19	7064688	7064888	+	862.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134147, intron 1 of 10)	intron (NM_134147, intron 1 of 10)	8020.0	NM_134147	107227.0	Mm.439977	NM_134147	ENSMUSG00000036278	Macrod1	AI604841|AW743046|D930010J01Rik|Lrp16	MACRO domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83028739-4	chr6	83028636	83028836	+	825.033325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033079, intron 9 of 9)	intron (NM_033079, intron 9 of 9)	4735.0	NM_010070	13448.0	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	3.54585703191051	3.90775793800235	2.57750248682131	4.00742940183922	4.14871545878773	5.207454159587	4.02333277145814	4.14203841691713	1.15789633663486	0.024599987837234	0.20688129958257
Merged-chr1-173634380-4	chr1	173634208	173634408	+	726.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175026, intron 1 of 6)	intron (NM_175026, intron 1 of 6)	3449.0	NM_175026	236312.0	Mm.447	NM_175026	ENSMUSG00000043263	Ifi209	4930422C14|AI447904|Ifix|Pyhin-1|Pyhin1	interferon activated gene 209	protein-coding	0.84273567835583	0.697826867912919	1.83231068021918	2.05964581871904	1.15925824198658	0.701482739006236	0.922767968439361	0.893308812846318	-2.14239702809954	0.13045869828697	0.56544727863238
Merged-chr14-69088659-3	chr14	69088559	69088759	+	812.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	59370.0	NM_009285	20855.0	Mm.20911	NM_009285	ENSMUSG00000014813	Stc1	Stc	stanniocalcin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-53800723-1	chr19	53800623	53800823	+	572.5	f0_c57.idr	intron (NM_001170847, intron 1 of 13)	intron (NM_001170847, intron 1 of 13)	-91508.0	NM_011050	18569.0	Mm.1605	NM_011050	ENSMUSG00000024975	Pdcd4	D19Ucla1|Ma3|Tis	programmed cell death 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105504809-1	chr8	105504709	105504909	+	671.166687	f0_balb.idr	Intergenic	Intergenic	-7907.0	NM_175160	70796.0	Mm.100917	NM_175160	ENSMUSG00000039199	Zdhhc1	4432412D04Rik|DHHC-1	zinc finger, DHHC domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-72282782-4	chr1	72282681	72282881	+	913.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356516, intron 1 of 6)	intron (NM_001356516, intron 1 of 6)	1540.0	NM_023523	111175.0	Mm.281738	NM_023523	ENSMUSG00000026189	Pecr	2400003B18Rik|TERP	peroxisomal trans-2-enoyl-CoA reductase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-98833489-2	chr15	98833389	98833589	+	689.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001033276, exon 55 of 55)	3' UTR (NM_001033276, exon 55 of 55)	-1981.0	NM_016781	19082.0	Mm.6670	NM_016781	ENSMUSG00000067713	Prkag1	AA571379|BB036179|Prkaac	protein kinase, AMP-activated, gamma 1 non-catalytic subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-98744347-4	chr10	98744253	98744453	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-170289.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55569313-2	chr14	55569213	55569413	+	821.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_133734, exon 15 of 15)	exon (NM_133734, exon 15 of 15)	-6361.0	NM_026808	68680.0	Mm.36758	NM_026808	ENSMUSG00000022215	Fitm1	1110028A07Rik|AV010547|Cg10671|Fit1	fat storage-inducing transmembrane protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-127240138-4	chr1	127240031	127240231	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145128, intron 1 of 17)	intron (NM_145128, intron 1 of 17)	35145.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-116178342-4	chr9	116178236	116178436	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2973.0	NM_029575	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-18139101-1	chr10	18139001	18139201	+	696.5	f0_c57.idr	intron (NM_001195036, intron 17 of 20)	intron (NM_001195036, intron 17 of 20)	71789.0	NM_001195036	100045792.0	Mm.380617	NM_001195036	ENSMUSG00000071392	Ect2l	C330021H03Rik|Gm10331	epithelial cell transforming sequence 2 oncogene-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-59593638-4	chr1	59593493	59593693	+	891.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013771, intron 12 of 19)	intron (NM_001013771, intron 12 of 19)	69299.0	NM_001357842	381260.0	Mm.486706	NM_001013771	ENSMUSG00000047361	Gm973	AW554518	predicted gene 973	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-9033970-4	chr3	9033864	9034064	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28000.0	NR_040597	75149.0	Mm.399324	NR_040597	ENSMUSG00000103116	4930539M17Rik	-	RIKEN cDNA 4930539M17 gene	ncRNA	6.10717791998848	6.24371875947802	6.00318102632002	6.45778253589049	5.0028525804174	5.040500169615	4.58047146473032	3.63327799327504	-1.76049139634674	1.68307060461719e-08	1.83577101038155e-06
Merged-chr9-44191359-4	chr9	44191261	44191461	+	910.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007619, intron 2 of 15)	intron (NM_007619, intron 2 of 15)	42685.0	NM_007619	12402.0	Mm.266871	NM_007619	ENSMUSG00000034342	Cbl	4732447J05Rik|Cbl-2|c-Cbl|cbl	Casitas B-lineage lymphoma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-79253367-4	chr11	79253273	79253473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019653, intron 1 of 8)	intron (NM_019653, intron 1 of 8)	1322.0	NM_019653	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-109476845-4	chr3	109476771	109476971	+	666.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020505, intron 2 of 26)	intron (NM_020505, intron 2 of 26)	-97136.0	NM_146139	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	0.236481563194684	0.00692173328437742	0.164314287052797	0.389821899975546	-0.00582945514246175	0.00793515299012146	0.168700845651233	0.496085523046931	-0.155938352934654	0.938454856868654	1
Merged-chr4-155095476-4	chr4	155095378	155095578	+	907.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356327, intron 6 of 12)	intron (NM_001356327, intron 6 of 12)	8874.0	NM_001356327	76866.0	Mm.200590	NM_001081100	ENSMUSG00000029049	Morn1	2900057D20Rik|4930417P05Rik|AU042805	MORN repeat containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-79693013-2	chr10	79692913	79693113	+	604.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302499)	promoter-TSS (NM_001302499)	-813.0	NM_001302499	16904.0	Mm.378960	NM_008504	ENSMUSG00000054206	Gzmm	Lmet1|MMET-1	granzyme M (lymphocyte met-ase 1)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-32162414-2	chr16	32162314	32162514	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_146069, exon 2 of 4)	5' UTR (NM_146069, exon 2 of 4)	3180.0	NM_146069	224109.0	Mm.33498	NM_146069	ENSMUSG00000052384	Nrros	E430025L02Rik|Lrcc33|Lrrc33	negative regulator of reactive oxygen species	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-118994115-2	chr7	118994015	118994215	+	722.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_022420, intron 1 of 3)	intron (NM_022420, intron 1 of 3)	1096.0	NM_022420	64297.0	Mm.103439	NM_022420	ENSMUSG00000008734	Gprc5b	AW125761|Raig2	G protein-coupled receptor, family C, group 5, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-31321695-3	chr6	31321594	31321794	+	817.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040261, intron 3 of 4)	intron (NR_040261, intron 3 of 4)	77079.0	NR_040300	100503869.0	Mm.370532	NR_040300	ENSMUSG00000086212	Mkln1os	Gm13845	muskelin 1, intracellular mediator containing kelch motifs, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-35754970-4	chr16	35754876	35755076	+	967.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153550, intron 1 of 8)	MTD|LTR|ERVL-MaLR	14380.0	NM_153550	224132.0	Mm.24094	NM_153550	ENSMUSG00000022848	Dirc2	RCC4	disrupted in renal carcinoma 2 (human)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-147398127-2	chr4	147398027	147398227	+	706.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039209, intron 1 of 2)	MLT1B|LTR|ERVL-MaLR	-155150.0	NM_001014397	433804.0	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154	zinc finger protein 985	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-67845230-4	chr9	67845128	67845328	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177184, intron 1 of 84)	intron (NM_177184, intron 1 of 84)	4832.0	NM_177184	320528.0	Mm.241454	NM_177184	ENSMUSG00000035284	Vps13c	AI552542|AV026040|C230055H22Rik|W51662|chorein	vacuolar protein sorting 13C	protein-coding	4.64906069883215	3.62901248456445	6.0053386923793	5.08890608662731	5.07373268294045	4.79507922053543	5.40648531298011	5.23571082414271	0.0546300925759803	0.897594107243615	0.998431161219273
Merged-chr12-111536495-2	chr12	111536395	111536595	+	770.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F1|SINE|Alu	-1606.0	NM_178041	217869.0	Mm.271222	NM_173363	ENSMUSG00000021282	Eif5	2810011H21Rik|D12Ertd549e	eukaryotic translation initiation factor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-73184545-4	chr15	73184446	73184646	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153178, intron 1 of 18)	CpG	401.0	NM_153178	239528.0	Mm.23095	NM_153178	ENSMUSG00000036698	Ago2	1110029L17Rik|2310051F07Rik|AI225898|AL022874|AW546247|Eif2c2|Gerp95|Gm10365|mKIAA4215	argonaute RISC catalytic subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-84925730-2	chr15	84925630	84925830	+	647.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_016714, intron 1 of 7)	(TC)n|Simple_repeat|Simple_repeat	2302.0	NM_016714	18141.0	Mm.28379	NM_016714	ENSMUSG00000016619	Nup50	1700030K07Rik|AI413123|Npap60	nucleoporin 50	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-14218347-2	chr2	14218247	14218447	+	636.700012	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081310, intron 3 of 3)	B3A|SINE|B2	-11067.0	NM_008625	17533.0	Mm.2019	NM_008625	ENSMUSG00000026712	Mrc1	AW259686|CD206|MR	mannose receptor, C type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-47471984-3	chr9	47471868	47472068	+	909.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58202.0	NM_001310841	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-27780770-2	chr15	27780670	27780870	+	921.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081302, intron 34 of 56)	intron (NM_001081302, intron 34 of 56)	-99228.0	NM_001242423	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16256156-3	chr7	16256044	16256244	+	890.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001173550, intron 1 of 1)	ID_B1|SINE|B4	3194.0	NM_001173550	12273.0	Mm.247623	NM_007577	ENSMUSG00000049130	C5ar1	C5aR|C5r1|Cd88|D7Msu1	complement component 5a receptor 1	protein-coding	1.1048710018708	1.25350063489599	0.723208931972752	1.47530211070079	0.99641991150665	1.11693923502402	0.725521086701616	1.28990826852541	-0.549639714834823	0.698645868188611	0.998284579433352
Merged-chr3-157636917-2	chr3	157636817	157637017	+	648.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011196, intron 2 of 2)	intron (NM_011196, intron 2 of 2)	70025.0	NM_011196	19218.0	Mm.30424	NM_011196	ENSMUSG00000040016	Ptger3	EP3|Pgerep3|Ptgerep3	prostaglandin E receptor 3 (subtype EP3)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-137787772-4	chr5	137787671	137787871	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001005426)	promoter-TSS (NM_001005426)	-31.0	NM_001005426	381678.0	Mm.332765	NM_001005426	ENSMUSG00000037108	Zcwpw1	Gm1053	zinc finger, CW type with PWWP domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-154177922-3	chr3	154177825	154178025	+	916.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081263, intron 2 of 21)	intron (NM_001081263, intron 2 of 21)	152635.0	NM_010713	16875.0	Mm.15530	NM_010713	ENSMUSG00000096225	Lhx8	L3|Lhx7	LIM homeobox protein 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-57078558-4	chr17	57078471	57078671	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153551)	promoter-TSS (NM_153551)	-61.0	NM_153551	70785.0	Mm.284447	NM_153551	ENSMUSG00000002668	Dennd1c	4432409M07Rik	DENN/MADD domain containing 1C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-80061402-4	chr17	80061365	80061565	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152119, intron 1 of 13)	CpG	803.0	NR_152119	72692.0	Mm.64579	NM_144802	ENSMUSG00000024095	Hnrnpll	2510028H02Rik|2810036L13Rik|AI256697|AI852082|Hnrpll	heterogeneous nuclear ribonucleoprotein L-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126748221-2	chr8	126748121	126748321	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-100799.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-126675330-9	chr2	126675259	126675459	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355109)	promoter-TSS (NM_001355109)	-7.0	NM_001355109	14391.0	Mm.293266	NM_010249	ENSMUSG00000027361	Gabpb1	BABPB2|E4TF1|E4TF1-47|E4TF1-53|E4Tf1B|GABPB|GABPB-1|GABPB-2|GABPB1-1|GABPB1-2|NRF2B1|NRF2B2	GA repeat binding protein, beta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-138529307-2	chr3	138529207	138529407	+	642.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007917, intron 2 of 7)	intron (NM_007917, intron 2 of 7)	2039.0	NM_001313980	13684.0	Mm.3941	NM_007917	ENSMUSG00000028156	Eif4e	EG668879|Eif4e-ps|If4e|eIF-4E	eukaryotic translation initiation factor 4E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-63648492-3	chr15	63648392	63648592	+	919.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	160247.0	NM_031378	83492.0	Mm.335619	NM_031378	ENSMUSG00000079025	Gsdmc	Gsdmc1|Mlze	gasdermin C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-160018553-4	chr2	160018456	160018656	+	969.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040499, intron 1 of 3)	intron (NR_040499, intron 1 of 3)	1903.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-103108599-1	chr9	103108499	103108699	+	1000.0	f0_c57.idr	Intergenic	Intergenic	-3475.0	NM_173781	270192.0	Mm.490252	NM_173781	ENSMUSG00000032549	Rab6b	9630015C03|AI844641|C330006L04Rik|D9Bwg0185e	RAB6B, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-121586148-4	chr10	121586067	121586267	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019786, intron 1 of 20)	intron (NM_019786, intron 1 of 20)	627.0	NM_019786	56480.0	Mm.34580	NM_019786	ENSMUSG00000020115	Tbk1	1200008B05Rik|AI462036|AW048562	TANK-binding kinase 1	protein-coding	5.60674666537321	5.76043163677946	5.59960727826679	5.24357844335381	5.70122485658009	5.00516876109801	5.44107351850408	5.03491789029229	-0.259856501496482	0.369982858214059	0.863700645402606
Merged-chr18-68197521-1	chr18	68197421	68197621	+	622.0	f0_balb.idr	intron (NM_172631, intron 3 of 5)	intron (NM_172631, intron 3 of 5)	-30425.0	NM_001357444	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-96391495-4	chr9	96391372	96391572	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27041.0	NM_001357212	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	3.06289390080712	2.77434614883253	2.15933070598455	2.70533964609195	2.90084597653053	2.410611414969	1.78102688066865	2.62101822185763	-0.444967364935169	0.571439348961589	0.963119869194766
Merged-chr7-127007721-2	chr7	127007621	127007821	+	642.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_080638, intron 1 of 14)	intron (NM_080638, intron 1 of 14)	6873.0	NM_080638	78388.0	Mm.228797	NM_080638	ENSMUSG00000030681	Mvp	2310009M24Rik|LRP|VAULT1	major vault protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150078816-4	chr4	150078728	150078928	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8675.0	NM_177366	269604.0	Mm.219307	NM_177366	ENSMUSG00000047875	Gpr157	F730108M23Rik	G protein-coupled receptor 157	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90632111-2	chr2	90632011	90632211	+	610.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45104.0	NM_021512	59015.0	Mm.24532	NM_021512	ENSMUSG00000051329	Nup160	160kDa|2810011M03Rik|AA414952|AU020188|Gtl-13|Gtl1-13|Gtl13|mKIAA0197	nucleoporin 160	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-10288708-4	chr3	10288580	10288780	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029310, intron 1 of 5)	RMER17D2|LTR|ERVK	12503.0	NM_001357159	75497.0	Mm.47052	NM_029310	ENSMUSG00000027530	Fabp12	1700008G05Rik	fatty acid binding protein 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-109480622-3	chr11	109480516	109480716	+	986.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028710, intron 1 of 13)	intron (NM_028710, intron 1 of 13)	-5276.0	NM_001361975	74008.0	Mm.482224	NM_028710	ENSMUSG00000020604	Arsg	6330406P08Rik|AI846872|ASG	arylsulfatase G	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-155729459-4	chr2	155729340	155729540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145537)	promoter-TSS (NM_145537)	35.0	NM_145537	108687.0	Mm.273706	NM_145537	ENSMUSG00000038312	Edem2	9530090G24Rik|AI327354	ER degradation enhancer, mannosidase alpha-like 2	protein-coding	4.24009231681876	4.0264106796728	3.56186455731503	4.48925366212445	4.04028424850188	4.12760835179408	3.68228019197739	4.59036712841749	0.0348527378699834	0.938515261000961	0.998431161219273
Merged-chr2-29889664-4	chr2	29889554	29889754	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177661)	promoter-TSS (NM_001177661)	-66.0	NM_001177661	18286.0	Mm.330116	NM_013615	ENSMUSG00000026790	Odf2	AI848335|MMTEST29	outer dense fiber of sperm tails 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-32347801-4	chr11	32347692	32347892	+	988.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177364)	promoter-TSS (NM_177364)	-19.0	NM_177364	268396.0	Mm.227616	NM_177364	ENSMUSG00000040711	Sh3pxd2b	G431001E03Rik|TSK4|fad49	SH3 and PX domains 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-59312778-4	chr3	59312671	59312871	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177855, intron 42 of 43)	intron (NM_177855, intron 42 of 43)	31485.0	NM_001162884	242050.0	Mm.228086	NM_001162884	ENSMUSG00000036334	Igsf10	6530405F15Rik|9030224D03|AA409708|AA536958|AI414626|Adlican2|CMF608	immunoglobulin superfamily, member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-8098911-4	chr3	8098806	8099006	+	985.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa-int|LTR|ERVL-MaLR	-144019.0	NR_040587	75476.0	Mm.491752	NR_040587	ENSMUSG00000100010	1700010I02Rik	-	RIKEN cDNA 1700010I02 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-50299197-4	chr6	50299084	50299284	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027881, intron 21 of 21)	intron (NM_027881, intron 21 of 21)	-37415.0	NM_018769	54722.0	Mm.248361	NM_018769	ENSMUSG00000029821	Gsdme	2310037D07Rik|4932441K13Rik|Dfna5|Dfna5h|EG14210|Fin15	gasdermin E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-80167939-2	chr1	80167839	80168039	+	855.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	46005.0	NM_173425	241128.0	Mm.145511	NM_173425	ENSMUSG00000043230	Fam124b	A830043J08Rik	family with sequence similarity 124, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-118927031-2	chr2	118926931	118927131	+	992.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_028117, exon 1 of 1)	exon (NM_028117, exon 1 of 1)	534.0	NM_028117	72136.0	Mm.486238	NM_028117	ENSMUSG00000074916	Chst14	2600016L03Rik|D4ST-1|D4st1	carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 14	protein-coding	-2.18233058068552	-2.15536956715525	-2.16352280018114	-2.04193253143548	-2.18043796738662	-2.15360272754651	-2.16167708693786	-2.16902129354933	-0.683654500252594	0.846597994014493	1
Merged-chr8-122478747-2	chr8	122478647	122478847	+	554.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_153775, exon 6 of 15)	exon (NM_153775, exon 6 of 15)	2604.0	NR_152823	66965.0	Mm.482288	NM_153775	ENSMUSG00000049482	Ctu2	2310061F22Rik|C16orf84|Ncs2	cytosolic thiouridylase subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-26908395-1	chr18	26908295	26908495	+	629.0	f0_balb.idr	Intergenic	Intergenic	-1154238.0	NM_001362334	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-80010971-2	chr17	80010871	80011071	+	568.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	51297.0	NR_152119	72692.0	Mm.64579	NM_144802	ENSMUSG00000024095	Hnrnpll	2510028H02Rik|2810036L13Rik|AI256697|AI852082|Hnrpll	heterogeneous nuclear ribonucleoprotein L-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-129528503-4	chr7	129528414	129528614	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63349.0	NM_172255	207425.0	Mm.229323	NM_172255	ENSMUSG00000042055	Wdr11	2900055P10Rik|AW489876|Brwd2|mKIAA1351	WD repeat domain 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-56526371-2	chr12	56526271	56526471	+	616.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045082, intron 1 of 6)	intron (NR_045082, intron 1 of 6)	3049.0	NR_045082	104798.0	Mm.310950	NR_045082	ENSMUSG00000112343	Sfta3-ps	AI413669|E030019B13Rik|Nanci	surfactant associated 3, pseudogene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28236594-2	chr17	28236494	28236694	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011145, intron 1 of 7)	intron (NM_011145, intron 1 of 7)	3840.0	NM_011145	19015.0	Mm.328914	NM_011145	ENSMUSG00000002250	Ppard	NUC-1|NUC1|Nr1c2|PPAR-beta|PPAR-delta|PPAR[b]|PPARdelta|Pparb|Pparb/d	peroxisome proliferator activator receptor delta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85230789-2	chr12	85230689	85230889	+	876.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11308.0	NM_145445	217715.0	Mm.29041	NM_145445	ENSMUSG00000004788	Eif2b2	EIF-2Bbeta|EIF2B	eukaryotic translation initiation factor 2B, subunit 2 beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-139238758-3	chr4	139238649	139238849	+	906.7000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	44638.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	3.64331488867445	3.53699196907745	3.22058293665089	3.56562427584644	4.14782301476333	2.8212625232822	3.96288563263806	3.72324035328905	0.387870918110111	0.470376373231455	0.925692944111129
Merged-chr19-32255153-3	chr19	32255025	32255225	+	937.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 3 of 9)	intron (NM_144792, intron 3 of 9)	-44112.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-12410818-2	chr13	12410718	12410918	+	671.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144835, intron 15 of 44)	B2_Mm1t|SINE|B2	15443.0	NM_144835	217995.0	Mm.171186	NM_144835	ENSMUSG00000050244	Heatr1	AA517551|B130016L12Rik|BC019693	HEAT repeat containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-99254849-4	chr5	99254748	99254948	+	976.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1921.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-124576224-4	chr2	124576122	124576322	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290997, intron 5 of 20)	intron (NM_001290997, intron 5 of 20)	-34074.0	NM_199238	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-51236700-2	chr18	51236600	51236800	+	808.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081224, intron 1 of 1)	(CA)n|Simple_repeat|Simple_repeat	118802.0	NM_001081224	71373.0	Mm.63546	NM_001081224	ENSMUSG00000073565	Prr16	5430406M13Rik|AI607429	proline rich 16	protein-coding	0.659375261873818	0.919028947123985	0.289772211098916	0.284396816728025	0.668293370127203	0.930386463972603	0.291307235635014	0.285336543437291	0.04026458339144	0.983111373142823	1
Merged-chr11-50379206-2	chr11	50379106	50379306	+	929.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347487, intron 2 of 12)	B1_Mus1|SINE|Alu	1487.0	NM_001347487	59013.0	Mm.21740	NM_021510	ENSMUSG00000007850	Hnrnph1	AI642080|E430005G16Rik|Hnrnph|Hnrph1	heterogeneous nuclear ribonucleoprotein H1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19149797-4	chr7	19149671	19149871	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026111)	promoter-TSS (NM_026111)	-67.0	NM_026943	107686.0	Mm.29135	NM_026943	ENSMUSG00000040824	Snrpd2	1810009A06Rik|SMD2	small nuclear ribonucleoprotein D2	protein-coding	5.17220496965929	5.26511746243543	5.81995805231249	4.46174946438716	5.37915766339425	5.2990284302994	4.77213288587875	5.23397200291002	-0.0771903053607543	0.820892240897476	0.998431161219273
Merged-chr4-154942092-2	chr4	154941983	154942183	+	748.0	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-14006.0	NM_178931	230979.0	Mm.215147	NM_178931	ENSMUSG00000042333	Tnfrsf14	Atar|HveA|Hvem|Tnfrs14	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	protein-coding	1.16912155453103	0.653964692488888	0.848722774217868	0.826071915018797	0.940766450171417	1.68906809336046	1.42062335782539	0.633983731456858	1.52267909742665	0.298071542394506	0.800257675359925
Merged-chr17-13306130-2	chr17	13306030	13306230	+	626.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CTGTG)n|Simple_repeat|Simple_repeat	-48442.0	NM_001167578	100041352.0	Mm.432087	NM_001167578	ENSMUSG00000052469	Tcp10c	D17Leh66C|D17Leh66ca|Gm9880|T66C-a|Tcp-10c	t-complex protein 10c	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-127792476-4	chr2	127792387	127792587	+	998.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015476)	promoter-TSS (NR_015476)	1.0	NR_015476	67885.0	Mm.27359	NM_175125	ENSMUSG00000051319	1500011K16Rik	-	RIKEN cDNA 1500011K16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71310588-4	chr8	71310463	71310663	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142322, intron 2 of 39)	RLTR17|LTR|ERVK	37849.0	NM_001142323	17925.0	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	4.6825663163368	5.07259788074728	4.70410231725261	5.04732871438277	4.97899657782475	5.3940788100616	4.69034793975625	4.9316755968511	0.16005117453042	0.626906955038488	0.980912176761026
Merged-chr1-166244576-2	chr1	166244476	166244676	+	769.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MEc|LINE|L1	-5832.0	NM_175296	98558.0	Mm.26189	NM_175296	ENSMUSG00000040629	Mael	4933405K18Rik|AU019877	maelstrom spermatogenic transposon silencer	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-134224887-1	chr5	134224787	134224987	+	545.0	f1_c57bl6.idr	intron (NM_010876, intron 7 of 10)	intron (NM_010876, intron 7 of 10)	4738.0	NM_001286037	17969.0	Mm.425296	NM_010876	ENSMUSG00000015950	Ncf1	NCF-47K|NOXO2|Ncf-1|p47-phox|p47<phox>|p47phox	neutrophil cytosolic factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-38645387-2	chr12	38645287	38645487	+	705.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30866.0	NR_045943	73867.0	Mm.78933	NR_045943	ENSMUSG00000112967	4930428E07Rik	-	RIKEN cDNA 4930428E07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-124753844-4	chr2	124753735	124753935	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	100254.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-43624621-3	chr15	43624510	43624710	+	821.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	147381.0	NM_025736	66736.0	Mm.244512	NM_025736	ENSMUSG00000022337	Emc2	4921531G14Rik|AV060620|AW209495|Ttc35	ER membrane protein complex subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-67036059-3	chr6	67035921	67036121	+	848.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040278)	promoter-TSS (NR_040278)	-578.0	NR_040278	320172.0	Mm.449039	NR_040278	ENSMUSG00000087231	E230016M11Rik	-	RIKEN cDNA E230016M11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-9048541-4	chr11	9048422	9048622	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001037928)	promoter-TSS (NM_001037928)	-70.0	NM_001037928	626870.0	Mm.369429	NM_001037928	ENSMUSG00000040978	Gm11992	-	predicted gene 11992	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-24685079-2	chr10	24684979	24685179	+	634.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001308329, intron 1 of 24)	intron (NM_001308329, intron 1 of 24)	27080.0	NM_001308327	18605.0	Mm.27254	NM_008813	ENSMUSG00000037370	Enpp1	4833416E15Rik|AI428932|C76301|CD203c|E-NPP 1|E-NPP1|Ly-41|M6S1|NPP1|Npps|PC-1|Pca|Pca-1|Pdnp1|ttw|twy	ectonucleotide pyrophosphatase/phosphodiesterase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-70237776-1	chr9	70237676	70237876	+	827.0	f0_balb.idr	intron (NM_181072, intron 1 of 27)	intron (NM_181072, intron 1 of 27)	30426.0	NM_181072	71602.0	Mm.249311	NM_181072	ENSMUSG00000032220	Myo1e	2310020N23Rik|9130023P14Rik|AA407778|myosin-1e|myr 3	myosin IE	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-110708158-2	chr7	110708058	110708258	+	767.700012	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60048.0	NM_001276301	11717.0	Mm.3238	NM_009667	ENSMUSG00000005686	Ampd3	-	adenosine monophosphate deaminase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-79521888-2	chr14	79521788	79521988	+	973.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286411, intron 1 of 8)	intron (NM_001286411, intron 1 of 8)	6214.0	NM_001286411	13709.0	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-14678092-1	chr8	14677992	14678192	+	660.0	f0_balb.idr	intron (NM_172910, intron 4 of 15)	intron (NM_172910, intron 4 of 15)	-210444.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71004473-4	chr17	71004347	71004547	+	997.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-1914.0	NM_026064	67268.0	Mm.489605	NM_026064	ENSMUSG00000024048	Myl12a	2900073G15Rik|AI838292|C80200	myosin, light chain 12A, regulatory, non-sarcomeric	protein-coding	3.62888555363921	3.85396213634611	3.25710046150896	2.56366595666508	3.19810742073581	3.49014920326925	3.54423737625303	3.51314043415185	0.0456058598584006	0.936696832671107	0.998431161219273
Merged-chr4-119004429-3	chr4	119004315	119004515	+	916.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42448.0	NM_133892	100470.0	Mm.26698	NM_133892	ENSMUSG00000024903	Lao1	AW990848	L-amino acid oxidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-120357421-4	chr6	120357300	120357500	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026028)	promoter-TSS (NM_026028)	69.0	NM_026028	67200.0	Mm.45767	NM_026028	ENSMUSG00000030177	Ccdc77	2400002C23Rik|2700091N06Rik|AV168274	coiled-coil domain containing 77	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-90217689-2	chr18	90217589	90217789	+	562.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-292465.0	NM_198295	67988.0	Mm.268041	NM_198295	ENSMUSG00000024614	Tmx3	6430411B10Rik|A730024F05Rik|AV259382|Txndc10|mKIAA1830	thioredoxin-related transmembrane protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36738979-2	chr18	36738879	36739079	+	615.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_028036, exon 8 of 12)	exon (NM_028036, exon 8 of 12)	3909.0	NM_028036	71983.0	Mm.135188	NM_028036	ENSMUSG00000006850	Tmco6	2410015B03Rik	transmembrane and coiled-coil domains 6	protein-coding	0.389119633109175	-0.057600470896168	-0.0625472332539622	0.349714149343355	-0.071738058027746	-0.0564843580475505	-0.0614568264948609	0.557846126261357	-0.322163940574404	0.88901503929254	1
Merged-chr17-27914806-1	chr17	27914706	27914906	+	651.0	f1_c57bl6.idr	intron (NM_181413, intron 1 of 24)	intron (NM_181413, intron 1 of 24)	5500.0	NM_181413	224650.0	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	-0.215155573088335	-0.195947737418839	-0.202181186599956	0.495484828886043	-0.21394040105048	0.72130119639215	-0.200801538667459	-0.20617984663078	0.598780634676878	0.807887711417864	1
Merged-chr2-164926384-1	chr2	164926284	164926484	+	1000.0	f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-14634.0	NM_199027	329559.0	Mm.330776	NM_199027	ENSMUSG00000039834	Zfp335	1810045J01Rik|NIF-1|Nif1|Znf335	zinc finger protein 335	protein-coding	-0.659222873881124	-0.467457669729146	-0.653095335706604	-0.655407141193469	-0.299284947319833	-0.649403219615525	-0.652432637419372	-0.24902524991574	2.17829775119309	0.423153308672686	1
Merged-chr3-94821411-3	chr3	94821283	94821483	+	661.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16184.0	NM_001165948	229584.0	Mm.274787	NM_172683	ENSMUSG00000038902	Pogz	9530006B08Rik	pogo transposable element with ZNF domain	protein-coding	3.31703709851608	2.77941357547269	2.20214908152022	1.59240358238998	2.57736944508744	1.41665514196546	2.2200778498958	2.71156852621074	-0.63938290771944	0.486266305864663	0.932503166794264
Merged-chr19-11263747-4	chr19	11263678	11263878	+	931.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007641, intron 1 of 6)	intron (NM_007641, intron 1 of 6)	2373.0	NM_007641	12482.0	Mm.4046	NM_007641	ENSMUSG00000024673	Ms4a1	AA960661|Cd20|Ly-44|Ms4a2	membrane-spanning 4-domains, subfamily A, member 1	protein-coding	1.87077355147414	1.05473002997986	1.43391853341166	1.9782116386204	1.79971069011995	1.65423825667914	1.85324713064857	1.0245828421129	-0.0569447281198922	0.962211930561758	0.998431161219273
Merged-chr16-91877597-2	chr16	91877497	91877697	+	573.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010587, intron 28 of 38)	intron (NM_010587, intron 28 of 38)	54033.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-105041752-2	chr3	105041652	105041852	+	807.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_030249, intron 1 of 5)	intron (NM_030249, intron 1 of 5)	11201.0	NM_001163332	80281.0	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-58106130-2	chr11	58105991	58106191	+	683.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356477, intron 1 of 6)	intron (NM_001356477, intron 1 of 6)	1862.0	NM_001356477	69125.0	Mm.28910	NM_026949	ENSMUSG00000020515	Cnot8	1500015I04Rik|1810022F04Rik|AA536816|AU015770|AU043059	CCR4-NOT transcription complex, subunit 8	protein-coding	1.36063260653258	1.35196509095218	0.623139024650914	0.613040093198589	1.17850762400557	0.638875682428435	0.625998161831647	1.71884150571555	0.346616068024389	0.831203386323585	0.998431161219273
Merged-chr17-28257020-4	chr17	28256925	28257125	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011145, intron 2 of 7)	intron (NM_011145, intron 2 of 7)	-14683.0	NR_045427	69050.0	Mm.486938	NR_045427	ENSMUSG00000002250	1810013A23Rik	-	RIKEN cDNA 1810013A23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-92911668-7	chr1	92911750	92911950	+	818.852356	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181405, intron 1 of 10)	intron (NM_181405, intron 1 of 10)	1025.0	NM_181405	108657.0	Mm.200971	NM_181405	ENSMUSG00000026269	Rnpepl1	1110014H17Rik|AI894167	arginyl aminopeptidase (aminopeptidase B)-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124112090-7	chr5	124112002	124112202	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025671)	promoter-TSS (NM_025671)	-219.0	NM_001361482	66627.0	Mm.7050	NM_025671	ENSMUSG00000023707	Ogfod2	1300006G11Rik|5730405M13Rik|AU041636|AW552395	2-oxoglutarate and iron-dependent oxygenase domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132336055-4	chr4	132335959	132336159	+	959.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133878, intron 4 of 9)	intron (NM_133878, intron 4 of 9)	-6521.0	NM_027925	71787.0	Mm.239183	NM_027925	ENSMUSG00000028898	Trnau1ap	1110007F05Rik|AA387999|Secp43|Trspap1|WI1-2643G14.2	tRNA selenocysteine 1 associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-52240580-3	chr6	52240485	52240685	+	826.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001122950, exon 1 of 2)	5' UTR (NM_001122950, exon 1 of 2)	269.0	NM_001122950	15395.0	Mm.5	NM_008263	ENSMUSG00000000938	Hoxa10	Hox-1.8|Hoxa-10	homeobox A10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-104115709-3	chr8	104115591	104115791	+	853.8666380000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009868, intron 2 of 11)	MTE-int|LTR|ERVL-MaLR	-9818.0	NR_131138	546096.0	Mm.252264	NR_131138	ENSMUSG00000110053	Gm29682	Gm45664	predicted gene, 29682	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-74825279-1	chr9	74825179	74825379	+	767.666687	f0_balb.idr	Intergenic	Intergenic	-23158.0	NR_045284	100503019.0	Mm.482658	NR_045284	ENSMUSG00000066477	Gm16551	-	predicted gene 16551	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19084658-4	chr7	19084545	19084745	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_032418, intron 1 of 14)	intron (NM_032418, intron 1 of 14)	796.0	NM_001190491	13400.0	Mm.6529	NM_032418	ENSMUSG00000030409	Dmpk	DM|DMK|Dm15|MDPK|MT-PK	dystrophia myotonica-protein kinase	protein-coding	3.68141239425442	3.97978704727494	4.47276573898203	4.52488165288431	4.14106766527068	2.51213876952051	4.14277100744389	3.96089090388819	-0.499788217124215	0.330277155492628	0.83197671091297
Merged-chr2-11501458-4	chr2	11501343	11501543	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177758, intron 1 of 14)	CpG	647.0	NM_001177754	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36727706-4	chr18	36727595	36727795	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009841)	promoter-TSS (NM_009841)	-880.0	NM_009841	12475.0	Mm.3460	NM_009841	ENSMUSG00000051439	Cd14	-	CD14 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-67529258-3	chr7	67529146	67529346	+	729.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028144, intron 8 of 8)	intron (NR_028144, intron 8 of 8)	115990.0	NM_175124	67867.0	Mm.31247	NM_027413	ENSMUSG00000030556	Lrrc28	1300004K21Rik|2210012C09Rik|2310058O11Rik	leucine rich repeat containing 28	protein-coding	2.54150499297451	2.40006531453778	1.57168975512717	2.8166918922872	3.64213550050957	3.53369950233824	3.56693922551793	4.17378587160926	2.26612218670347	0.000579375971009757	0.0126235222158143
Merged-chr14-102804704-2	chr14	102804604	102804804	+	579.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	177928.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-128632788-4	chr1	128632745	128632945	+	956.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40546.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	2.11311450944761	1.7701008278171	2.48009767861537	1.05135912179119	2.13235757485264	1.10569172970234	2.41849910517593	1.05517564407488	-0.318927452898417	0.793615479898167	0.998431161219273
Merged-chr2-173546503-4	chr2	173546425	173546625	+	801.229187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23933.0	NM_028158	72221.0	Mm.46132	NM_028158	ENSMUSG00000027518	1700021F07Rik	-	RIKEN cDNA 1700021F07 gene	protein-coding	2.55107812177432	2.14134517683826	2.76032288198303	2.76459594733339	2.30137316318475	1.76006597998684	2.37063163084607	2.30016605873724	-0.844771298107271	0.298305013285081	0.800257675359925
Merged-chr15-25364833-4	chr15	25364823	25365023	+	805.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027395, intron 1 of 1)	intron (NM_027395, intron 1 of 1)	48841.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80583095-4	chr7	80583021	80583221	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48002.0	NM_001042527	12144.0	Mm.12932	NM_007550	ENSMUSG00000030528	Blm	-	Bloom syndrome, RecQ like helicase	protein-coding	5.2680840870137	3.84556646948062	5.48145726111511	5.21223942928348	5.20689441979441	3.97295864250176	5.54356207073282	5.34842328600312	0.0647064894224307	0.874652863497299	0.998431161219273
Merged-chr7-27167171-4	chr7	27167079	27167279	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053208)	promoter-TSS (NM_053208)	-377.0	NM_053208	112406.0	Mm.29978	NM_053208	ENSMUSG00000058709	Egln2	0610011A13Rik|C85656|Hif-p4h-1|Ier4|Phd1|SM-20	egl-9 family hypoxia-inducible factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-53316939-2	chr19	53316839	53317039	+	703.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360348, intron 1 of 5)	intron (NM_001360348, intron 1 of 5)	5494.0	NM_001360348	17859.0	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-56075438-4	chr9	56075343	56075543	+	897.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14533.0	NM_011193	19200.0	Mm.2534	NM_011193	ENSMUSG00000032322	Pstpip1	CD2BP1|def-2	proline-serine-threonine phosphatase-interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-88705308-4	chr1	88705182	88705382	+	933.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-3091.0	NM_177305	320982.0	Mm.27968	NM_177305	ENSMUSG00000049866	Arl4c	A630084M22Rik|Arl7|LAK	ADP-ribosylation factor-like 4C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-29465955-3	chr2	29465848	29466048	+	784.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290489, intron 2 of 6)	L2a|LINE|L2	9346.0	NR_105753	102465170.0		NR_105753	ENSMUSG00000098539	Mir133c	Gm27865|mmu-mir-133c	microRNA 133c	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-84762783-4	chr18	84762679	84762879	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	18712.0	NR_155706	102641800.0		NR_155706		Gm38576	-	predicted gene, 38576	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91850316-2	chr16	91850216	91850416	+	985.900024	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110275, intron 20 of 28)	intron (NM_001110275, intron 20 of 28)	81314.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-31169562-4	chr6	31169450	31169650	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110470, intron 2 of 2)	intron (NR_110470, intron 2 of 2)	48924.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-134503902-1	chr4	134503802	134504002	+	730.0	f1_c57bl6.idr	intron (NM_001285847, intron 2 of 2)	intron (NM_001285847, intron 2 of 2)	6861.0	NM_001285849	71904.0	Mm.142343	NM_027995	ENSMUSG00000037348	Paqr7	2310021M12Rik|AV001994|BB007237|Mpra|PGLP|mPR	progestin and adipoQ receptor family member VII	protein-coding	0.971265934394246	-0.0568887478864706	-0.0634607625817706	-0.0685674565324381	-0.0758401830957361	-0.0554144110913062	0.44784802803713	0.11854262643118	-1.07555347474836	0.629280144168116	1
Merged-chr16-17177688-2	chr16	17177588	17177788	+	570.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009456, intron 1 of 3)	intron (NM_009456, intron 1 of 3)	23804.0	NM_009456	22195.0	Mm.3074	NM_009456	ENSMUSG00000038965	Ube2l3	C79827|UbcM4|Ubce7	ubiquitin-conjugating enzyme E2L 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-134344800-2	chr1	134344700	134344900	+	962.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-11872.0	NM_001144855	68507.0	Mm.295105	NM_001144855	ENSMUSG00000026458	Ppfia4	100042382|1110008G13Rik|AI448359|AI852265|C81506|Gm3812	protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19397244-2	chr7	19397144	19397344	+	999.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146182, intron 4 of 12)	intron (NM_146182, intron 4 of 12)	2677.0	NM_001286038	232943.0	Mm.213403	NM_146182	ENSMUSG00000040714	Klc3	BC017147|Klct	kinesin light chain 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-32693117-3	chr12	32693006	32693206	+	878.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-127229.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-174042255-2	chr1	174042135	174042335	+	710.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_146717, exon 1 of 1)	exon (NM_146717, exon 1 of 1)	302.0	NM_146717	258712.0	Mm.223146	NM_146717	ENSMUSG00000045381	Olfr433	MOR123-1	olfactory receptor 433	protein-coding	0.680225586467116	1.20308897450877	0.444338404679108	0.944229049647864	0.433010654144435	0.451882295498617	0.445691093319254	0.950907947805189	-1.66531328259847	0.361763384694962	1
Merged-chr7-30875731-1	chr7	30875631	30875831	+	546.0	f1_c57bl6.idr	intron (NR_102722, intron 6 of 15)	intron (NR_102722, intron 6 of 15)	3297.0	NM_009845	12483.0	Mm.260994	NM_009845	ENSMUSG00000030577	Cd22	A530093D23|Lyb-8|Lyb8	CD22 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-36970805-4	chr9	36970678	36970878	+	708.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_148950, intron 2 of 11)	intron (NM_148950, intron 2 of 11)	137204.0	NM_001357611	235180.0	Mm.5264	NM_183171	ENSMUSG00000032118	Fez1	UNC-76|UNC76	fasciculation and elongation protein zeta 1 (zygin I)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-34621105-4	chr19	34621020	34621220	+	955.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053217, intron 2 of 2)	MTD|LTR|ERVL-MaLR	8691.0	NM_001362130	112419.0	Mm.440727	NM_053217	ENSMUSG00000067297	Ifit1bl2	2010002M12Rik|AW412491|Ifit1b	interferon induced protein with tetratricopeptide repeats 1B like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-67471425-2	chr18	67471325	67471525	+	705.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144867, intron 1 of 6)	intron (NM_144867, intron 1 of 6)	6576.0	NM_144867	225655.0	Mm.221420	NM_144867	ENSMUSG00000024530	Prelid3a	A230074A19Rik|BC019561|Slmo1	PRELI domain containing 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-25223754-4	chr12	25223648	25223848	+	945.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	94574.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-58556832-2	chr3	58556688	58556888	+	756.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001005509, intron 13 of 13)	intron (NM_001005509, intron 13 of 13)	-19848.0	NM_001040396	69227.0	Mm.270950	NM_001040396	ENSMUSG00000075700	Selenot	2810407C02Rik|5730408P04Rik|Selt	selenoprotein T	protein-coding	0.815353713905806	0.514877714455397	1.76203315170682	1.36490388078084	0.477168838632875	0.517748049252742	1.07357607893198	0.493613160773738	-2.49102555339476	0.139713988053675	0.583801403065239
Merged-chr6-89277783-4	chr6	89277691	89277891	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131021, intron 1 of 3)	intron (NR_131021, intron 1 of 3)	7934.0	NR_131021	75131.0	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	Gm44205	RIKEN cDNA 4930512J16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-97927993-4	chr15	97927902	97928102	+	998.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19706.0	NM_009504	22337.0	Mm.245084	NM_009504	ENSMUSG00000022479	Vdr	Nr1i1	vitamin D (1,25-dihydroxyvitamin D3) receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-45966713-4	chr13	45966615	45966815	+	868.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1724.0	NM_009124	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-58344944-6	chr15	58344956	58345156	+	831.680542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027211, intron 7 of 8)	intron (NM_027211, intron 7 of 8)	-20887.0	NM_177755	268807.0	Mm.124498	NM_177755	ENSMUSG00000022357	Klhl38	8230402K04Rik	kelch-like 38	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-32321386-4	chr11	32321284	32321484	+	743.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21315.0	NM_175000	216635.0	Mm.338482	NM_175000	ENSMUSG00000020295	Hbq1a	A230090E05Rik|Gm876|Hbq1|Hbqt2	hemoglobin, theta 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-39259379-4	chr6	39259255	39259455	+	893.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52582.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-55518941-2	chr11	55518841	55519041	+	668.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290821, intron 8 of 8)	intron (NM_001290821, intron 8 of 8)	17715.0	NR_106112	102465760.0		NR_106112	ENSMUSG00000098906	Mir7652	Gm27932|mmu-mir-7652	microRNA 7652	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28079881-4	chr17	28079759	28079959	+	859.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357681, intron 2 of 9)	CpG	725.0	NM_001357681	21463.0	Mm.29758	NM_013687	ENSMUSG00000062859	Tcp11	D17Ken1|Tcp-11	t-complex protein 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-75558117-1	chr9	75558017	75558217	+	541.0	f1_balb.idr	intron (NM_001357828, intron 1 of 10)	intron (NM_001357828, intron 1 of 10)	1540.0	NM_016963	50875.0	Mm.38445	NM_016963	ENSMUSG00000058587	Tmod3	U-Tmod|UTMOD	tropomodulin 3	protein-coding	-1.84354474832578	-1.81325489144778	-1.53416061964661	-1.82993901100912	-1.8414184563789	-1.81126990231468	-1.82034119297928	-1.82859217979378	-1.52252619601533	0.665276690233728	1
Merged-chr11-117848489-4	chr11	117848424	117848624	+	925.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009689)	promoter-TSS (NM_009689)	-713.0	NM_001012273	11799.0	Mm.8552	NM_009689	ENSMUSG00000017716	Birc5	AAC-11|Api4|TIAP|survivin40	baculoviral IAP repeat-containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-74555006-4	chr7	74554880	74555080	+	979.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023908)	promoter-TSS (NM_023908)	-200.0	NM_001038643	108116.0	Mm.425467	NM_023908	ENSMUSG00000025790	Slco3a1	5830414C08Rik|Anr1|MJAM|OATP-D|R75096|Slc21a11	solute carrier organic anion transporter family, member 3a1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-95896665-2	chr11	95896565	95896765	+	579.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008081, intron 1 of 10)	intron (NM_008081, intron 1 of 10)	18206.0	NM_008081	14422.0	Mm.340702	NM_008081	ENSMUSG00000013418	B4galnt2	AI593864|Dlb-1|Dlb1|Galg2|Galgt2|Ggm3|Igf2bp1	beta-1,4-N-acetyl-galactosaminyl transferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-10287669-4	chr10	10287474	10287674	+	988.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	184740.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-38074023-4	chr7	38073932	38074132	+	874.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33458.0	NM_007633	12447.0	Mm.16110	NM_007633	ENSMUSG00000002068	Ccne1	AW538188|CycE1	cyclin E1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-152131661-4	chr4	152131554	152131754	+	823.591675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207688, intron 3 of 10)	CpG-10714	-2729.0	NM_019585	56226.0	Mm.264215	NM_019585	ENSMUSG00000028943	Espn	je	espin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-83688635-4	chr12	83688538	83688738	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008943)	promoter-TSS (NM_008943)	75.0	NM_008943	19164.0	Mm.998	NM_008943	ENSMUSG00000019969	Psen1	Ad3h|PS-1|PS1|S182	presenilin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-105802702-4	chr3	105802589	105802789	+	862.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1308.0	NM_145541	109905.0	Mm.101922	NM_145541	ENSMUSG00000068798	Rap1a	AI848598|G-22K|Krev-1|Rap1	RAS-related protein 1a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-53998369-4	chr5	53998265	53998465	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081103)	promoter-TSS (NM_001081103)	-158.0	NM_001081103	116873.0	Mm.265985	NM_054083	ENSMUSG00000039156	Stim2	-	stromal interaction molecule 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-36742635-4	chr5	36742501	36742701	+	850.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6078.0	NM_133724	117197.0	Mm.46744	NM_133724	ENSMUSG00000060708	Bloc1s4	2610101N07Rik|Blos4|Cno	biogenesis of lysosomal organelles complex-1, subunit 4, cappuccino	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-51518627-4	chr3	51518516	51518716	+	998.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_080793, exon 8 of 8)	3' UTR (NM_080793, exon 8 of 8)	34650.0	NM_016858	19338.0	Mm.1664	NM_016858	ENSMUSG00000027739	Rab33b	-	RAB33B, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85647498-4	chr12	85647388	85647588	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-39232.0	NM_016767	53314.0	Mm.6672	NM_016767	ENSMUSG00000034266	Batf	B-ATF|SFA-2	basic leucine zipper transcription factor, ATF-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-39527476-4	chr6	39527363	39527563	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172477, intron 1 of 18)	intron (NM_172477, intron 1 of 18)	30371.0	NM_172477	209773.0	Mm.440021	NM_172477	ENSMUSG00000038456	Dennd2a	B930096L08Rik|C130031G22|mKIAA1277	DENN/MADD domain containing 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-88040620-1	chr6	88040520	88040720	+	542.0	f1_c57bl6.idr	intron (NM_001293652, intron 1 of 7)	B1_Mur2|SINE|Alu	4397.0	NM_001293653	19349.0	Mm.333233	NM_009005	ENSMUSG00000079477	Rab7	Rab7a	RAB7, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-41592675-2	chr8	41592575	41592775	+	782.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-175557.0	NM_013522	14300.0	Mm.217312	NM_013522	ENSMUSG00000031590	Frg1	-	FSHD region gene 1	protein-coding	0.652364603394583	2.17216349003987	1.71462354830017	0.67938221677351	1.20543125232486	1.80851655714168	0.6993991840153	0.682145946363187	-0.901824638951557	0.551888521876102	0.95940318976411
Merged-chr9-25571692-3	chr9	25571585	25571785	+	658.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 3 of 7)	intron (NM_026189, intron 3 of 7)	90088.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-113639922-2	chr13	113639822	113640022	+	669.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3B|LINE|L1	-21358.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-55428914-3	chr13	55428793	55428993	+	678.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2089.0	NM_021489	58992.0	Mm.42224	NM_021489	ENSMUSG00000021492	F12	FXII|HAF	coagulation factor XII (Hageman factor)	protein-coding	0.979557684229219	0.697867406705702	1.39385197059405	1.15820832055637	0.456964538240995	0.703713843794468	0.477244878577341	0.468953439140799	-3.74911057695716	0.0274451356571091	1
Merged-chr11-38335786-1	chr11	38335686	38335886	+	550.0	f1_c57bl6.idr	Intergenic	Intergenic	184259.0	NR_040295	100502917.0	Mm.61144	NR_040295		Gm12130	-	predicted gene 12130	ncRNA	-0.595037262513446	-0.080186092702184	-0.587252263421021	-0.590178633130825	-0.594314464321657	-0.582604970052336	0.00382103245022775	-0.58966738236934	0.304225317690954	0.914656096863809	1
Merged-chr13-5866425-4	chr13	5866332	5866532	+	847.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011803, intron 2 of 3)	intron (NM_011803, intron 2 of 3)	4943.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-58251056-2	chr15	58250956	58251156	+	694.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36164.0	NM_026346	67731.0	Mm.25683	NM_026346	ENSMUSG00000022358	Fbxo32	4833442G10Rik|AI430017|ATROGIN1|Gm20361|MAFbx	F-box protein 32	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-35052458-1	chr9	35052358	35052558	+	667.333313	f1_balb.idr	intron (NM_009178, intron 8 of 10)	intron (NM_009178, intron 8 of 10)	-64270.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	0.222906195951692	0.454249105666478	0.0895524329784238	0.0849310325005236	0.88477480041885	0.0968797373446557	0.0908723658136406	0.522073759663596	1.62713354555472	0.428572406308598	1
Merged-chr13-49179336-2	chr13	49179236	49179436	+	977.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8211.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81523415-4	chr15	81523324	81523524	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57108.0	NM_019712	56438.0	Mm.29405	NM_019712	ENSMUSG00000022400	Rbx1	1500002P15Rik|AA517855|ROC1	ring-box 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-3770189-1	chr13	3770089	3770289	+	545.0	f1_c57bl6.idr	Intergenic	Intergenic	34129.0	NM_027416	70405.0	Mm.20079	NM_027416	ENSMUSG00000063130	Calml3	2310068O22Rik|AI326174	calmodulin-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-16310855-3	chr2	16310755	16310955	+	906.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45449.0	NM_026162	67448.0	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-88955474-4	chr11	88955386	88955586	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029023)	promoter-TSS (NM_029023)	-44.0	NM_029023	74617.0	Mm.34126	NM_029023	ENSMUSG00000000278	Scpep1	2410018F01Rik|4833411K15Rik|AI957256|Risc	serine carboxypeptidase 1	protein-coding	7.06796328691305	6.88746152545168	7.07373816395662	6.37035668856828	6.44731147920013	5.26510801605295	6.2354818313838	5.98685597751732	-0.879181909002705	0.000465564280074714	0.0105260808398299
Merged-chr17-80621126-4	chr17	80620994	80621194	+	758.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290345, intron 16 of 33)	ID_B1|SINE|B4	-43281.0	NM_001360144	381113.0	Mm.329216	NM_001033443	ENSMUSG00000033966	Cdkl4	AU067824|Gm942	cyclin-dependent kinase-like 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-5114212-2	chr15	5114112	5114312	+	546.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-2401.0	NM_026069	67281.0	Mm.10474	NM_026069	ENSMUSG00000041841	Rpl37	3110005M08Rik	ribosomal protein L37	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-45883429-3	chr4	45883328	45883528	+	686.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305421, intron 17 of 18)	intron (NM_001305421, intron 17 of 18)	-6875.0	NM_198660	381522.0	Mm.54220	NM_198660	ENSMUSG00000035539	Ccdc180	E230008N13Rik|Gm1025	coiled-coil domain containing 180	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-43780926-2	chr5	43780856	43781056	+	621.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_178729, intron 1 of 8)	intron (NM_178729, intron 1 of 8)	1193.0	NM_001159963	242960.0	Mm.25794	NM_178729	ENSMUSG00000039753	Fbxl5	Fbl4|Fir4	F-box and leucine-rich repeat protein 5	protein-coding	-0.248534191867754	-0.236056611661245	0.0701136160005411	-0.243316462819524	0.209768148677097	-0.235129257389074	-0.239256986121575	0.270883185039636	1.7687372409455	0.473420747125368	1
Merged-chr1-60869024-2	chr1	60868924	60869124	+	616.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17B2|LTR|ERVK	-40001.0	NM_009843	12477.0	Mm.390	NM_009843	ENSMUSG00000026011	Ctla4	Cd152|Ctla-4|Ly-56	cytotoxic T-lymphocyte-associated protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-46059112-4	chr7	46058997	46059197	+	950.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153057, intron 15 of 30)	intron (NM_153057, intron 15 of 30)	25401.0	NM_153057	211548.0	Mm.274811	NM_153057	ENSMUSG00000030835	Nomo1	D7Ertd156e|Nomo|pM5	nodal modulator 1	protein-coding	2.12723909403773	1.98412751572292	1.75633057806512	1.87097029673861	2.04093953941074	2.69530559582004	2.42470443750479	1.87988599449442	0.915484198544678	0.306066961964218	0.806865344318695
Merged-chr4-141797434-2	chr4	141797302	141797502	+	581.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001277932, intron 2 of 7)	L1ME3|LINE|L1	3790.0	NM_001277932	12371.0	Mm.88829	NM_015733	ENSMUSG00000028914	Casp9	AI115399|APAF-3|AW493809|CASP-9|Caspase-9|ICE-LAP6|Mch6	caspase 9	protein-coding	1.18685753751651	1.82598180805894	1.03579207834915	1.8272856388012	2.17000117434218	1.84040200210614	1.04053315008617	2.1312391216543	1.04140991965931	0.383607043787464	0.874591621156771
Merged-chr6-73436759-3	chr6	73436680	73436880	+	941.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_108032)	TTS (NR_108032)	32887.0	NM_025737	66740.0	Mm.440760	NM_025737	ENSMUSG00000056197	4931417E11Rik	-	RIKEN cDNA 4931417E11 gene	protein-coding	1.58003782637204	1.66719759099682	1.82256924375237	1.44007776940683	1.252730700184	0.979404103533104	1.62134816471654	1.14555824742388	-1.35549643193065	0.256522795342013	0.755464039890395
Merged-chr10-60289124-2	chr10	60289024	60289224	+	688.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001146124, intron 1 of 13)	B1F|SINE|Alu	4663.0	NM_001146124	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133841224-2	chr4	133841112	133841312	+	561.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33519.0	NM_001285506	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	1.78787334486866	1.02306057783823	2.22644938570182	1.20381168956075	1.32680970788465	1.27748297930229	1.59478367123397	2.1698655891287	-0.0352586070079009	0.97613264244021	0.998431161219273
Merged-chr15-86226846-2	chr15	86226746	86226946	+	563.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145476, intron 1 of 12)	intron (NM_145476, intron 1 of 12)	12387.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-101959640-4	chr5	101959552	101959752	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 6 of 66)	intron (NM_172882, intron 6 of 66)	110269.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-24781268-4	chr5	24781162	24781362	+	972.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-23419.0	NM_153076	214301.0	Mm.63484	NM_153076	ENSMUSG00000038135	Crygn	-	crystallin, gamma N	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6946908-2	chr19	6946808	6947008	+	590.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285453, intron 2 of 3)	PB1|SINE|Alu	4346.0	NM_001285453	12015.0	Mm.4387	NM_007522	ENSMUSG00000024959	Bad	AI325008|Bbc2	BCL2-associated agonist of cell death	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-60729034-2	chr13	60728934	60729134	+	823.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 15 of 26)	intron (NM_134062, intron 15 of 26)	57330.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107575712-2	chr9	107575612	107575812	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1215.0	NM_008317	15586.0	Mm.475658	NM_008317	ENSMUSG00000010051	Hyal1	Hya1|Hyal-1	hyaluronoglucosaminidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-128247660-4	chr7	128247575	128247775	+	831.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289553, intron 1 of 9)	intron (NM_001289553, intron 1 of 9)	863.0	NM_001289552	21804.0	Mm.3248	NM_009365	ENSMUSG00000030782	Tgfb1i1	ARA55|Hic5|TSC-5|hic-5	transforming growth factor beta 1 induced transcript 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-28806522-2	chr3	28806422	28806622	+	897.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_026517, exon 2 of 4)	exon (NM_026517, exon 2 of 4)	1014.0	NM_026517	68028.0	Mm.21724	NM_026517	ENSMUSG00000039221	Rpl22l1	3110001N18Rik|AU041196	ribosomal protein L22 like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-58042099-4	chr2	58041964	58042164	+	907.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10688.0	NM_029972	77767.0	Mm.91712	NM_029972	ENSMUSG00000026830	Ermn	A330104H05Rik|AI854460|ermin|mKIAA1189	ermin, ERM-like protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-41484467-2	chr13	41484367	41484567	+	584.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111324, intron 1 of 7)	intron (NM_001111324, intron 1 of 7)	2893.0	NM_001111324	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70075589-4	chr14	70075531	70075731	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1814.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-134614542-3	chr5	134614451	134614651	+	723.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020044, intron 1 of 12)	intron (NM_020044, intron 1 of 12)	474.0	NM_022964	56743.0	Mm.391375	NM_020044	ENSMUSG00000040751	Lat2	AW125574|LAB|NTAL|WSCR5|Wbscr15|Wbscr5	linker for activation of T cells family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-45020597-2	chr19	45020480	45020680	+	656.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001130526, intron 1 of 4)	intron (NM_001130526, intron 1 of 4)	2445.0	NM_001130526	226154.0	Mm.28204	NM_145503	ENSMUSG00000035342	Lzts2	BC014695|LAPSER1|mKIAA1813	leucine zipper, putative tumor suppressor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167765997-2	chr2	167765897	167766097	+	924.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	74820.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-144009663-4	chr2	144009567	144009767	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133626, intron 1 of 2)	intron (NM_133626, intron 1 of 2)	1596.0	NM_133626	81910.0	Mm.13705	NM_024281	ENSMUSG00000027422	Rrbp1	1700087N07Rik|5730465C04Rik|ES/130|mKIAA1398|mRRp0|mRRp1.8|mRRp10|mRRp15a|mRRp15b|mRRp16.8|mRRp2|mRRp41|mRRp47|mRRp5.4|p180	ribosome binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-104443686-2	chr7	104443586	104443786	+	817.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009099, intron 1 of 7)	L1_Mus4|LINE|L1	2439.0	NM_001357467	20128.0	Mm.295578	NM_009099	ENSMUSG00000030921	Trim30a	Rpt-1|Rpt1|Trim30	tripartite motif-containing 30A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-40192029-2	chr10	40191929	40192129	+	571.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17B|LTR|ERVK	-49775.0	NM_001114332	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-37252569-1	chr9	37252469	37252669	+	548.0	f1_c57bl6.idr	intron (NM_001145960, intron 1 of 18)	MER92-int|LTR|ERV1	3169.0	NM_020258	56857.0	Mm.440037	NM_020258	ENSMUSG00000032122	Slc37a2	G3PP|Slc37a1|cI-2|ci2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-140620456-2	chr6	140620356	140620556	+	753.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2207.0	NM_178803	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41629649-1	chr19	41629549	41629749	+	548.0	f1_balb.idr	intron (NM_015748, intron 22 of 36)	intron (NM_015748, intron 22 of 36)	40998.0	NR_106166	102465884.0		NR_106166	ENSMUSG00000098286	Mir8091	Gm27575|mmu-mir-8091	microRNA 8091	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6339223-2	chr19	6339123	6339323	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001168490, intron 7 of 7)	intron (NM_001168490, intron 7 of 7)	-1937.0	NM_009006	26412.0	Mm.25860	NM_009006	ENSMUSG00000024948	Map4k2	AI385662|BL44|GCK|Rab8ip	mitogen-activated protein kinase kinase kinase kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-75213931-3	chr8	75213855	75214055	+	818.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029182)	promoter-TSS (NM_029182)	11.0	NM_029182	75141.0	Mm.179267	NM_029182	ENSMUSG00000034472	Rasd2	4930526B11Rik|AU045414|Rhes|TEM-2|TEM2	RASD family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-66106383-2	chr7	66106283	66106483	+	613.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3132.0	NM_001081163	269941.0	Mm.333916	NM_001081163	ENSMUSG00000032640	Chsy1	mKIAA0990	chondroitin sulfate synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-14061057-2	chr13	14060957	14061157	+	976.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001331178, intron 1 of 4)	Lx3B|LINE|L1	2431.0	NM_001331119	14593.0	Mm.148039	NM_010282	ENSMUSG00000021302	Ggps1	1810026C22Rik|9530089B04Rik|AI843169|C79210	geranylgeranyl diphosphate synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-39602187-1	chr8	39602087	39602287	+	594.0	f1_balb.idr	intron (NM_001113326, intron 8 of 9)	intron (NM_001113326, intron 8 of 9)	40491.0	NM_031195	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	2.59388780517478	1.54428633147692	1.49113211741499	1.18264437447402	1.58819323161742	2.45096748593265	3.06494079993171	3.03058714772406	1.75544418546583	0.0789131601053151	0.427523453714332
Merged-chr5-139341614-2	chr5	139341514	139341714	+	888.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_197980, intron 2 of 2)	intron (NM_197980, intron 2 of 2)	3552.0	NM_197980	68033.0	Mm.261064	NM_197980	ENSMUSG00000045438	Cox19	1810074D02Rik|2810437L13Rik	cytochrome c oxidase assembly protein 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-69416298-4	chr18	69416195	69416395	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 3 of 19)	intron (NM_001361128, intron 3 of 19)	70135.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	1.2732319411841	1.55082380930419	1.78597532798335	2.35529207120792	1.42027639730788	1.16862388346675	1.7998338317134	2.04771026275213	-0.549786732636278	0.629804156038303	0.981201918729827
Merged-chr1-182755189-2	chr1	182755089	182755289	+	603.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6009.0	NM_001033547	433386.0	Mm.338103	NM_001033547	ENSMUSG00000043429	Ccdc185	4922505E12Rik	coiled-coil domain containing 185	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-95723734-2	chr16	95723634	95723834	+	802.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4_|SINE|ID	21327.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-123769646-4	chr9	123769542	123769742	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009913, intron 1 of 2)	intron (NM_009913, intron 1 of 2)	2431.0	NM_001166625	12769.0	Mm.440604	NM_009913	ENSMUSG00000029530	Ccr9	A130091K22Rik|Cmkbr10|GPR-9-6	chemokine (C-C motif) receptor 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-45861781-4	chr1	45861695	45861895	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	63799.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-87718782-4	chr10	87718674	87718874	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-139491.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	3.72975195955078	2.06416353876708	3.4646021242773	3.91491554812479	3.36571792551	3.23633900621058	3.12760818925577	3.02956365218489	-0.437180190916079	0.490553274933112	0.934345795476137
Merged-chr18-9513393-2	chr18	9513293	9513493	+	588.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F3|LINE|L1	-63239.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-37435482-4	chr19	37435386	37435586	+	957.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008245, intron 1 of 3)	CpG	645.0	NM_008245	15242.0	Mm.33896	NM_008245	ENSMUSG00000024986	Hhex	Hex|Hex1|Hhex-rs2|Prh|Prhx	hematopoietically expressed homeobox	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72616791-4	chr6	72616695	72616895	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009444)	promoter-TSS (NM_009444)	-47.0	NM_009444	22135.0	Mm.246563	NM_009444		Tgoln2	TGN38B|TGN41|TGN46|Ttgn2	trans-golgi network protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-83812692-4	chr2	83812592	83812792	+	948.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175514)	promoter-TSS (NM_175514)	-36.0	NM_175514	241520.0	Mm.330351	NM_175514	ENSMUSG00000048388	Fam171b	D430039N05Rik	family with sequence similarity 171, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-161520210-5	chr1	161520161	161520361	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25604.0	NM_183391	240873.0	Mm.276823	NM_183391	ENSMUSG00000066755	Tnfsf18	Gitrl|Tnlg2a	tumor necrosis factor (ligand) superfamily, member 18	protein-coding	4.08514918084211	4.26245195759479	4.67991682677488	4.52138071465483	4.3844390673122	4.41441398376996	4.02301522173074	3.2945546414305	-0.404345646736086	0.355770403144789	0.853664850644233
Merged-chr6-83586630-2	chr6	83586530	83586730	+	829.099976	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_078345, exon 8 of 8)	non-coding (NR_078345, exon 8 of 8)	-14126.0	NM_001362080	70527.0	Mm.32801	NM_024239	ENSMUSG00000006906	Stambp	5330424L14Rik|5730422L11Rik|AW107289|Amsh|mKIAA4198	STAM binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75049998-2	chr11	75049898	75050098	+	841.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001002764, intron 12 of 18)	intron (NM_001002764, intron 12 of 18)	15993.0	NR_030454	735274.0		NR_030454	ENSMUSG00000106252	Mir684-1	Mirn684-1	microRNA 684-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-98939233-2	chr15	98939133	98939333	+	891.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4843.0	NM_011654	22143.0	Mm.392113	NM_011654	ENSMUSG00000023004	Tuba1b	Tuba2	tubulin, alpha 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-49412854-1	chr6	49412754	49412954	+	774.0	f1_c57bl6.idr	intron (NM_029916, intron 6 of 23)	RMER15-int|LTR|ERVL	17250.0	NM_029916	77485.0	Mm.128054	NM_029916	ENSMUSG00000023403	Stk31	C330007K24Rik	serine threonine kinase 31	protein-coding	-0.654203750232095	-0.906716396103307	-0.345559305711495	-0.917224069321165	-0.920361906015164	-0.904044330727832	-0.914362853589523	-0.916835673576791	-2.96158595613085	0.328953899946767	1
Merged-chr16-91561241-4	chr16	91561134	91561334	+	841.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008338, intron 5 of 6)	intron (NM_008338, intron 5 of 6)	14140.0	NM_008338	15980.0	Mm.249364	NM_008338	ENSMUSG00000022965	Ifngr2	Ifgr2|Ifgt	interferon gamma receptor 2	protein-coding	0.386901844593438	0.605632233706933	0.695720896846704	0.25939565066283	0.391032623932041	0.6129881943379	0.704988277091877	0.260172009881523	0.0403027732720217	0.981639743311174	1
Merged-chr11-117990172-4	chr11	117990074	117990274	+	969.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151726, intron 1 of 9)	intron (NR_151726, intron 1 of 9)	3317.0	NR_151726	74451.0	Mm.28864	NM_133757	ENSMUSG00000017715	Pgs1	2610019F11Rik|4933424M23Rik|SAF	phosphatidylglycerophosphate synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-95314909-4	chr1	95314817	95315017	+	994.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026321, intron 1 of 2)	intron (NM_026321, intron 1 of 2)	1289.0	NM_026321	67698.0	Mm.272705	NM_026321	ENSMUSG00000051185	Fam174a	2310044D20Rik|Fam174|Naa6|Tmem157	family with sequence similarity 174, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-75593422-3	chr10	75593275	75593475	+	722.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359425, intron 1 of 7)	intron (NM_001359425, intron 1 of 7)	3994.0	NR_153110	23887.0	Mm.257927	NM_011820	ENSMUSG00000006344	Ggt5	AI551243|GGL|GGT-REL|Ggtla1	gamma-glutamyltransferase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-96144310-2	chr16	96144210	96144410	+	811.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1109.0	NM_207301	71446.0	Mm.255063	NM_207301	ENSMUSG00000023147	Wrb	5530402J05Rik|C030018G21Rik|Chd5	tryptophan rich basic protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-61366442-2	chr3	61366342	61366542	+	661.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028712, exon 1 of 1)	3' UTR (NM_028712, exon 1 of 1)	1935.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-53258497-2	chr5	53258397	53258597	+	918.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8609.0	NM_001145433	66278.0	Mm.27900	NM_001145433	ENSMUSG00000061461	Smim20	1110067B18Rik|1810013D10Rik|N28078	small integral membrane protein 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-156424328-2	chr1	156424202	156424402	+	808.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-3387.0	NM_001346967	77352.0	Mm.428709	NM_001033180	ENSMUSG00000026601	Axdnd1	9430070O13Rik|Gm979	axonemal dynein light chain domain containing 1	protein-coding	-0.0397693506994092	-0.0149084291517325	-0.0229293862782525	-0.0291983660091176	1.03112163593013	-0.0131161022021243	0.877094494559503	-0.0280979779378829	4.34199342254952	0.0503629885686343	1
Merged-chr2-70877537-4	chr2	70877410	70877610	+	992.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52030.0	NM_172664	228012.0	Mm.136511	NM_172664	ENSMUSG00000041997	Tlk1	4930545J15Rik	tousled-like kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-71487056-3	chr6	71486957	71487157	+	645.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6820.0	NM_009543	22644.0	Mm.422969	NM_009543	ENSMUSG00000052656	Rnf103	AW146237|AW212918|Zfp103|kf-1	ring finger protein 103	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-14889095-1	chr18	14888995	14889195	+	788.0	f1_c57bl6.idr	intron (NM_001100449, intron 14 of 14)	intron (NM_001100449, intron 14 of 14)	-99900.0	NR_045372	74456.0	Mm.391075	NR_045372		4933424G05Rik	-	RIKEN cDNA 4933424G05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-105262544-4	chr14	105262438	105262638	+	688.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029561, intron 1 of 7)	B3A|SINE|B2	3865.0	NM_001190989	76273.0	Mm.290669	NM_029561	ENSMUSG00000053253	Ndfip2	0710001O20Rik|2810436B12Rik|9130207N19Rik|N4wbp5a|mKIAA1165	Nedd4 family interacting protein 2	protein-coding	1.16972545795037	1.2163694627796	0.650986095047695	0.641929699335552	1.45343702805569	1.58518554342028	0.653558941022452	0.835223115505765	1.05544251198014	0.492850261774378	0.935679785535167
Merged-chr16-91851036-2	chr16	91850936	91851136	+	968.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110275, intron 21 of 28)	intron (NM_001110275, intron 21 of 28)	80594.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-68391262-3	chr8	68391160	68391360	+	873.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172753, intron 5 of 9)	intron (NM_172753, intron 5 of 9)	22801.0	NR_038181	73609.0	Mm.443247	NR_038181	ENSMUSG00000085197	1700125H03Rik	4930510D22Rik	RIKEN cDNA 1700125H03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-22843046-4	chr11	22842957	22843157	+	915.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001169114, intron 1 of 1)	intron (NM_001169114, intron 1 of 1)	16678.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126780776-4	chr7	126780616	126780816	+	745.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011538)	promoter-TSS (NM_011538)	-767.0	NM_011538	21389.0	Mm.727	NM_011538	ENSMUSG00000030699	Tbx6	rv	T-box 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-105967219-3	chr12	105967120	105967320	+	920.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43043.0	NM_011705	22367.0	Mm.2981	NM_011705	ENSMUSG00000021115	Vrk1	51PK	vaccinia related kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-68828016-2	chr7	68827916	68828116	+	571.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-78778.0	NM_025549	66412.0	Mm.251199	NM_025549	ENSMUSG00000042659	Arrdc4	2410003C09Rik|AV216361	arrestin domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-152654118-2	chr3	152654018	152654218	+	649.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355635, intron 3 of 8)	B4|SINE|B4	-12795.0	NR_040386	99542.0	Mm.394921	NR_040386	ENSMUSG00000097745	AI115009	-	expressed sequence AI115009	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-89236823-4	chr7	89236731	89236931	+	780.087524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360746, intron 5 of 14)	intron (NM_001360746, intron 5 of 14)	101956.0	NM_028343	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-69308095-3	chr10	69307998	69308198	+	646.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER30|DNA|hAT-Charlie	44814.0	NM_007659	12534.0	Mm.281367	NM_007659	ENSMUSG00000019942	Cdk1	Cdc2|Cdc2a|p34<CDC2>	cyclin-dependent kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-80885519-4	chr12	80885403	80885603	+	906.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38944.0	NR_033786	67340.0	Mm.386790	NR_033786	ENSMUSG00000101912	1700052I22Rik	-	RIKEN cDNA 1700052I22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-3895678-4	chr16	3895590	3895790	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153801, intron 3 of 3)	ORR1E|LTR|ERVL-MaLR	11071.0	NM_001290689	74763.0	Mm.28403	NM_029090	ENSMUSG00000005982	Naa60	1200013P24Rik|AI315146|HAT4|Nat15|NatF	N(alpha)-acetyltransferase 60, NatF catalytic subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165318622-4	chr2	165318532	165318732	+	998.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080287, intron 1 of 20)	intron (NM_080287, intron 1 of 20)	2194.0	NM_001302752	140579.0	Mm.35064	NM_080287	ENSMUSG00000017670	Elmo2	1190002F24Rik|CED-12	engulfment and cell motility 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-79407400-4	chr8	79407276	79407476	+	673.299988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-7908.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53082088-4	chr4	53081994	53082194	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013454, exon 16 of 50)	exon (NM_013454, exon 16 of 50)	70214.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-34662012-3	chr14	34661915	34662115	+	839.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8441.0	NR_029647	723831.0		NR_029647	ENSMUSG00000094316	Mir297-1	Mir297a-1|Mirn297-1	microRNA 297-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-24621801-4	chr10	24621728	24621928	+	831.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MamGypLTR3a|LTR|Gypsy	26386.0	NM_010217	14219.0	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	1.53466715061219	2.62448387232587	1.19849935382303	2.1713801086585	2.07249121617756	1.23508081920613	2.55259071841712	2.38274032462358	0.343222495438013	0.748681684988282	0.998431161219273
Merged-chr3-105054060-2	chr3	105053971	105054171	+	753.099976	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030249)	promoter-TSS (NM_030249)	-925.0	NM_030249	80281.0	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-9107502-4	chr5	9107392	9107592	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081029, intron 2 of 4)	intron (NM_001081029, intron 2 of 4)	6755.0	NM_001081029	652925.0	Mm.439954	NM_001081029	ENSMUSG00000079659	Tmem243	4930420K17Rik|E030031F02Rik	transmembrane protein 243, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-18916570-2	chr8	18916470	18916670	+	676.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TAA)n|Simple_repeat|Simple_repeat	34301.0	NM_001286469	319581.0	Mm.111354	NM_176951	ENSMUSG00000039814	Xkr5	5430438H03Rik|XRG5	X-linked Kx blood group related 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-81694678-6	chr4	81694646	81694846	+	751.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-207733.0	NR_030570	100124446.0		NR_030570	ENSMUSG00000077941	Mir466h	Mirn466h	microRNA 466h	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-86405632-2	chr15	86405532	86405732	+	591.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358062, intron 8 of 9)	intron (NM_001358062, intron 8 of 9)	127957.0	NM_001358062	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-59741906-2	chr9	59741806	59742006	+	557.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001172069, intron 1 of 2)	MIRc|SINE|MIR	8743.0	NM_001172069	71599.0	Mm.279070	NM_027838	ENSMUSG00000051705	Senp8	9130010J17Rik|AU020827|Den1|Nedp1|Prsc2	SUMO/sentrin specific peptidase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-17877225-2	chr17	17877125	17877325	+	847.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_013521, exon 2 of 2)	exon (NM_013521, exon 2 of 2)	6714.0	NM_013521	14293.0	Mm.56951	NM_013521	ENSMUSG00000045551	Fpr1	FPR|LXA4R|fMLF-R	formyl peptide receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-13531624-2	chr13	13531524	13531724	+	732.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58785.0	NM_010748	17101.0	Mm.342337	NM_010748	ENSMUSG00000019726	Lyst	D13Sfk13|beige|bg	lysosomal trafficking regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-82993102-2	chr6	82993002	82993202	+	555.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_033079, intron 4 of 9)	B3|SINE|B2	40369.0	NM_010070	13448.0	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35439062-4	chr17	35438958	35439158	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001201460)	promoter-TSS (NM_001201460)	-97.0	NM_010394	15018.0	Mm.431282	NM_010394	ENSMUSG00000060550	H2-Q7	H-2Q7|Ped|Q9|Qa-2|Qa-7|Qa7	histocompatibility 2, Q region locus 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69911369-1	chr11	69911269	69911469	+	544.0	f1_c57bl6.idr	intron (NM_001013414, intron 25 of 28)	intron (NM_001013414, intron 25 of 28)	-2665.0	NM_001357906	56310.0	Mm.477738	NM_019726	ENSMUSG00000023170	Gps2	AI505953|GPS-2	G protein pathway suppressor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-144265398-2	chr2	144265298	144265498	+	596.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_030762)	TTS (NR_030762)	804.0	NR_030762	100313519.0	Mm.453538	NR_030762	ENSMUSG00000077714	Snord17	MBI-43	small nucleolar RNA, C/D box 17	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-55761228-4	chr17	55761122	55761322	+	990.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139138, intron 2 of 16)	MERV1_LTR|LTR|ERV1	11238.0	NM_139138	52614.0	Mm.210497	NM_139138	ENSMUSG00000032915	Adgre4	D17Ertd479e|Egf-tm7|Emr4|Fire|Gpr127	adhesion G protein-coupled receptor E4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-12564406-4	chr19	12564324	12564524	+	836.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	-9086.0	NM_001346545	107373.0	Mm.1643	NM_026640	ENSMUSG00000024691	Fam111a	4632417K18Rik|AW413625	family with sequence similarity 111, member A	protein-coding	3.03657596515274	2.2887506875107	3.35640988101147	2.30435621295112	3.18844123514517	2.88282387102	3.07896333344463	1.48650391865297	-0.0391812625364827	0.961386651990546	0.998431161219273
Merged-chr5-129887420-4	chr5	129887313	129887513	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024166)	promoter-TSS (NM_024166)	57.0	NM_024166	14004.0	Mm.30133	NM_024166	ENSMUSG00000070493	Chchd2	AL033347|Etohi6	coiled-coil-helix-coiled-coil-helix domain containing 2	protein-coding	2.90617744320104	3.8581365536464	3.59670671361221	2.95979495881375	3.02771543295267	3.49332880898545	3.37894831227025	3.88840059373333	0.150450777194897	0.794313490010862	0.998431161219273
Merged-chr18-75610839-2	chr18	75610780	75610980	+	855.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_201354, intron 4 of 11)	intron (NM_201354, intron 4 of 11)	86816.0	NM_201354	269037.0	Mm.36745	NM_201354	ENSMUSG00000052928	Ctif	Gm672	CBP80/20-dependent translation initiation factor	protein-coding	3.02296229418174	2.98578756777412	3.7724493910917	2.96884423741971	1.53213969383578	1.43184317406529	2.11427305636363	2.20951388248681	-2.81628125997177	0.000652728341358491	0.0138613132997417
Merged-chr17-12706811-2	chr17	12706711	12706911	+	802.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010515, intron 22 of 47)	intron (NM_010515, intron 22 of 47)	-30973.0	NM_009202	20517.0	Mm.594	NM_009202	ENSMUSG00000023829	Slc22a1	Lx1|Oct1|Orct|Orct1	solute carrier family 22 (organic cation transporter), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-94390109-2	chr11	94390009	94390209	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029600, intron 1 of 30)	MIRc|SINE|MIR	2867.0	NM_029600	76408.0	Mm.23942	NM_029600	ENSMUSG00000020865	Abcc3	1700019L09Rik|ABC31|MLP2|MOAT-D|MRP3	ATP-binding cassette, sub-family C (CFTR/MRP), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-54666156-3	chr1	54666060	54666260	+	783.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081433, intron 18 of 27)	intron (NM_001081433, intron 18 of 27)	-108476.0	NM_001163314	241062.0	Mm.103539	NM_175508	ENSMUSG00000073678	Pgap1	5033403E17Rik|9030223K07Rik|A530084K22|D230012E17Rik|oto	post-GPI attachment to proteins 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-73914830-1	chr12	73914730	73914930	+	572.5	f0_balb.idr	intron (NM_010431, intron 1 of 14)	intron (NM_010431, intron 1 of 14)	6963.0	NM_001313919	15251.0	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-20152137-2	chr11	20152037	20152237	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-39186.0	NM_146243	66713.0	Mm.259045	NM_146243	ENSMUSG00000020152	Actr2	4921510D23Rik|AA409782|Arp2|D6Ertd746e	ARP2 actin-related protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-34878061-4	chr19	34877966	34878166	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023792)	promoter-TSS (NM_023792)	-149.0	NM_023792	75735.0	Mm.24742	NM_023792	ENSMUSG00000033610	Pank1	Pank|Pank1b	pantothenate kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-87853980-5	chr1	87853890	87854090	+	737.200012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_136921, exon 1 of 2)	non-coding (NR_136921, exon 1 of 2)	309.0	NR_136921	100503175.0	Mm.426422	NR_136921	ENSMUSG00000101942	Gm19582	-	predicted gene, 19582	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53080379-4	chr4	53080257	53080457	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 17 of 49)	MIRb|SINE|MIR	68477.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-107130809-3	chr3	107130717	107130917	+	709.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29250.0	NM_008417	16490.0	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165015057-3	chr2	165014931	165015131	+	936.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144892, intron 2 of 7)	intron (NM_144892, intron 2 of 7)	19748.0	NM_144892	228869.0	Mm.233080	NM_144892	ENSMUSG00000039804	Ncoa5	CIA	nuclear receptor coactivator 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-88327643-4	chr10	88327547	88327747	+	825.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027878, intron 5 of 6)	intron (NM_027878, intron 5 of 6)	29428.0	NM_027878	71712.0	Mm.35450	NM_027878	ENSMUSG00000020057	Dram1	1200002N14Rik|Dram	DNA-damage regulated autophagy modulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-31061452-4	chr3	31061360	31061560	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22494.0	NR_105975	102465610.0		NR_105975	ENSMUSG00000098890	Mir7008	Gm27752|mmu-mir-7008	microRNA 7008	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-91183675-4	chr12	91183563	91183763	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181815, intron 20 of 25)	intron (NM_181815, intron 20 of 25)	73434.0	NR_030473	735273.0		NR_030473	ENSMUSG00000076118	Mir669c	Mirn669c|Mirn669c-1	microRNA 669c	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34970034-1	chr17	34969934	34970134	+	639.0	f0_balb.idr	exon (NM_010479, exon 1 of 1)	exon (NM_010479, exon 1 of 1)	2122.0	NM_010479	193740.0	Mm.6388	NM_010479	ENSMUSG00000091971	Hspa1a	Hsp70-3|Hsp70.3|Hsp72|hsp68|hsp70A1	heat shock protein 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-50761711-4	chr9	50761618	50761818	+	918.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001311073, exon 4 of 4)	3' UTR (NM_001311073, exon 4 of 4)	4215.0	NM_001311073	68721.0	Mm.171374	NM_023483	ENSMUSG00000037971	1110032A03Rik	4930500N06Rik|c11orf1	RIKEN cDNA 1110032A03 gene	protein-coding	-1.52696403314699	-1.49523967873556	-1.5048333853602	-1.51271394162622	-1.52473704212565	-1.49316068248889	-1.50266158046844	-1.06847079017215	2.01069003169785	0.564432837776867	1
Merged-chr10-98954755-4	chr10	98954532	98954732	+	976.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359507, intron 1 of 21)	intron (NM_001359507, intron 1 of 21)	39480.0	NM_026482	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-136331557-3	chr7	136331469	136331669	+	887.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_040459)	TTS (NR_040459)	17846.0	NR_040459	330664.0	Mm.127762	NR_040459	ENSMUSG00000109633	C230079O03Rik	C230079O03	RIKEN cDNA C230079O03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120730871-2	chr11	120730771	120730971	+	664.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_007621, exon 3 of 8)	exon (NM_007621, exon 3 of 8)	1150.0	NM_007621	12409.0	Mm.21454	NM_007621	ENSMUSG00000025150	Cbr2	MLCR	carbonyl reductase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-56079797-4	chr9	56079696	56079896	+	877.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10180.0	NM_011193	19200.0	Mm.2534	NM_011193	ENSMUSG00000032322	Pstpip1	CD2BP1|def-2	proline-serine-threonine phosphatase-interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-6145088-4	chr18	6144969	6145169	+	984.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8971.0	NM_001039692	75415.0	Mm.239675	NM_029277	ENSMUSG00000041225	Arhgap12	2810011M08Rik	Rho GTPase activating protein 12	protein-coding	2.72382592314466	2.97969661690146	1.6327755919149	1.32570884192612	2.66992486248799	3.16463455552209	2.61164039563308	1.81215926415244	0.576289731029566	0.534706778832258	0.95286627222167
Merged-chr2-51933766-3	chr2	51933615	51933815	+	727.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355607)	promoter-TSS (NM_001355607)	-380.0	NM_001355607	71684.0	Mm.28309	NM_030243	ENSMUSG00000036249	Rbm43	0610033I05Rik	RNA binding motif protein 43	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-17893467-4	chr17	17893433	17893633	+	863.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008039, exon 2 of 2)	exon (NM_008039, exon 2 of 2)	5709.0	NM_008039	14289.0	Mm.378918	NM_008039	ENSMUSG00000052270	Fpr2	E330010I07Rik|Fpr-rs2	formyl peptide receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-134454922-2	chr5	134454822	134455022	+	720.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081462, intron 1 of 29)	intron (NM_001081462, intron 1 of 29)	1340.0	NM_001081465	57080.0	Mm.332735	NM_020331	ENSMUSG00000023079	Gtf2ird1	1700012P16Rik|BEN|Cream1|ESTM9|GTF3|Gtf2il|MusTRD1|Tg(Alb1-Myc)166.8Sst|WBSCR11|X83320	general transcription factor II I repeat domain-containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-88836227-2	chr15	88836127	88836327	+	595.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16581.0	NM_029720	76737.0	Mm.292567	NM_029720	ENSMUSG00000023272	Creld2	5730592L21Rik|C85758	cysteine-rich with EGF-like domains 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135188825-2	chr5	135188725	135188925	+	551.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011714, intron 1 of 18)	intron (NM_011714, intron 1 of 18)	1502.0	NM_011714	22385.0	Mm.40331	NM_011714	ENSMUSG00000002748	Baz1b	C87820|WSTF|Wbscr9	bromodomain adjacent to zinc finger domain, 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139791465-4	chr5	139791381	139791581	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010757)	promoter-TSS (NM_010757)	-55.0	NM_010757	17135.0	Mm.157313	NM_010757	ENSMUSG00000018143	Mafk	AW061068|NF-E2|Nfe2u	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein K (avian)	protein-coding	7.39629287360453	7.30221052368485	7.41090307919652	7.29932943514595	6.41432281527915	6.76641791905997	6.28328990551299	6.57928401004065	-0.883205174518756	2.93642862720307e-07	2.277883879473e-05
Merged-chr3-117981258-2	chr3	117981158	117981358	+	872.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-112322.0	NM_029655	76561.0	Mm.33824	NM_029655	ENSMUSG00000028007	Snx7	2510028H01Rik	sorting nexin 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-36713145-2	chr7	36713045	36713245	+	836.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172298, intron 1 of 1)	intron (NM_172298, intron 1 of 1)	15027.0	NM_172298	243931.0	Mm.44141	NM_172298	ENSMUSG00000021217	Tshz3	A630038G13Rik|Tsh3|Zfp537|mKIAA1474|teashirt3	teashirt zinc finger family member 3	protein-coding	1.07450728246207	0.553486914984695	1.07032489860504	1.67682834971249	1.18783035773166	0.556058689941362	0.544523230915246	0.534531048754547	-1.87978999970143	0.261184461672029	0.762408459680314
Merged-chr16-19969639-4	chr16	19969554	19969754	+	947.18335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183390, intron 1 of 6)	intron (NM_183390, intron 1 of 6)	13395.0	NM_183390	239743.0	Mm.86699	NM_183390	ENSMUSG00000043008	Klhl6	-	kelch-like 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-65681122-3	chr17	65681019	65681219	+	861.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133685, intron 5 of 6)	(GGA)n|Simple_repeat|Simple_repeat	-38915.0	NM_001146002	213272.0	Mm.255732	NM_153519	ENSMUSG00000050612	Txndc2	AU021712|Sptrx-1|Sptrx1|Trx4	thioredoxin domain containing 2 (spermatozoa)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-60855211-4	chr2	60855144	60855344	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	26194.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-108843141-4	chr9	108843044	108843244	+	893.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001359573, exon 25 of 36)	exon (NM_001359573, exon 25 of 36)	-10899.0	NM_134420	171429.0	Mm.45201	NM_134420	ENSMUSG00000023259	Slc26a6	B930010B04Rik|CFEX|Pat-1|Pat1	solute carrier family 26, member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-120053796-1	chr4	120053696	120053896	+	830.666687	f0_c57.idr	intron (NM_010657, intron 2 of 8)	intron (NM_010657, intron 2 of 8)	-107410.0	NM_007902	13615.0	Mm.284855	NM_007902	ENSMUSG00000028635	Edn2	ET-2|PPET2|VIC	endothelin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-55113177-7	chr3	55113066	55113266	+	928.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001144987, intron 1 of 8)	intron (NM_001144987, intron 1 of 8)	1000.0	NM_001144987	229285.0	Mm.235523	NM_144895	ENSMUSG00000036580	Spg20	AI840044|C79168|SPARTIN|Spart|TAHCCP1|mKIAA0610	spastic paraplegia 20, spartin (Troyer syndrome) homolog (human)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-53505682-4	chr8	53505562	53505762	+	854.091675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6040.0	NM_001205054	11593.0	Mm.334535	NM_001005847	ENSMUSG00000031521	Aga	AW060726	aspartylglucosaminidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-126466857-3	chr2	126466691	126466891	+	903.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359975, intron 3 of 27)	intron (NM_001359975, intron 3 of 27)	24762.0	NM_001080944	241633.0	Mm.222235	NM_001080944	ENSMUSG00000060131	Atp8b4	Im	ATPase, class I, type 8B, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-165710126-3	chr1	165710000	165710200	+	756.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2006.0	NM_178593	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-10521343-4	chr16	10521212	10521412	+	923.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007575, intron 15 of 18)	intron (NM_007575, intron 15 of 18)	21742.0	NM_021428	58239.0	Mm.353006	NM_021428	ENSMUSG00000038055	Dexi	1810029J14Rik|AI836170|AW413143|D16Bwg0586e|Myle	dexamethasone-induced transcript	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80374336-2	chr10	80374236	80374436	+	801.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-4699.0	NR_038088	100568459.0		NR_038088	ENSMUSG00000115783	Bc1	Gm24367	brain cytoplasmic RNA 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36307247-4	chr1	36307156	36307356	+	971.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033310)	promoter-TSS (NR_033310)	-477.0	NM_001172206	214855.0	Mm.34316	NM_145996	ENSMUSG00000037447	Arid5a	D430024K22Rik|Mrf1	AT rich interactive domain 5A (MRF1-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191403310-4	chr1	191403230	191403430	+	872.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6289.0	NM_144880	226849.0	Mm.205569	NM_144880	ENSMUSG00000026626	Ppp2r5a	PR61alpha	protein phosphatase 2, regulatory subunit B', alpha	protein-coding	3.13069672598153	3.25882488898944	2.7457626578708	2.24555023364137	2.75874332757152	3.52117800418318	3.08639315565753	2.55650030341826	0.224859160450265	0.742323938731155	0.998431161219273
Merged-chr7-24407098-4	chr7	24406939	24407139	+	728.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028047, intron 5 of 13)	intron (NM_028047, intron 5 of 13)	7411.0	NM_028047	71997.0	Mm.150977	NM_028047	ENSMUSG00000002210	Smg9	1500002O20Rik|AI429693|N28092	smg-9 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	0.557538079122411	0.780772689168578	0.434377344571017	0.941853070617619	0.789696454789001	0.442594406386573	0.754514285996607	0.843766218958129	0.131977649863615	0.935373105726351	1
Merged-chr7-141534447-2	chr7	141534347	141534547	+	797.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026522, intron 1 of 10)	PB1D10|SINE|Alu	5410.0	NM_026522	68038.0	Mm.245355	NM_026522	ENSMUSG00000025512	Chid1	3110023E09Rik|AI841869	chitinase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-128137400-2	chr7	128137300	128137500	+	562.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021334, intron 14 of 29)	L1MB7|LINE|L1	7832.0	NM_021334	16411.0	Mm.22378	NM_021334	ENSMUSG00000030789	Itgax	AI449405|Cd11c|Cr4|N418	integrin alpha X	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-70879015-3	chr9	70878915	70879115	+	724.116638	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001324473, intron 1 of 8)	intron (NM_001324473, intron 1 of 8)	55793.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166001578-2	chr2	166001478	166001678	+	954.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008679, intron 1 of 22)	intron (NM_008679, intron 1 of 22)	8941.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-137633511-2	chr5	137633411	137633611	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_033148, intron 1 of 21)	intron (NR_033148, intron 1 of 21)	4388.0	NR_033148	100316903.0	Mm.200763	NR_033148		Gm20605	Lrch4-sap25	predicted gene 20605	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-84121019-2	chr6	84120919	84121119	+	804.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077694, intron 30 of 54)	intron (NM_001077694, intron 30 of 54)	101633.0	NM_021469	26903.0	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-11807449-3	chr19	11807347	11807547	+	966.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011502, intron 1 of 10)	intron (NM_011502, intron 1 of 10)	11956.0	NM_001286543	20908.0	Mm.272264	NM_011502	ENSMUSG00000041488	Stx3	Syn-3	syntaxin 3	protein-coding	-1.26297147305202	-1.51336964835199	-1.52290115558626	-1.53073061942109	-1.54267576991114	-1.36133000838898	-1.52074343127311	-1.52932914913802	-0.563746499231123	0.872676935132172	1
Merged-chr8-103055424-2	chr8	103055324	103055524	+	984.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-270313.0	NM_009866	12552.0	Mm.1571	NM_009866	ENSMUSG00000031673	Cdh11	Cad11|OSF-4	cadherin 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-136940594-2	chr6	136940494	136940694	+	825.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301301, intron 1 of 5)	intron (NM_001301301, intron 1 of 5)	909.0	NM_001301305	11857.0	Mm.2241	NM_007486	ENSMUSG00000030220	Arhgdib	D4|Gdid4|Ly-GDI	Rho, GDP dissociation inhibitor (GDI) beta	protein-coding	-0.388190819271385	-0.0371347840543956	-0.380518344487527	0.126434506191356	-0.387481198162745	-0.375907334403049	-0.0616804624656592	-0.382905489013599	-1.49949153366487	0.558883881947418	1
Merged-chr16-24913157-3	chr16	24913065	24913265	+	854.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 10 of 12)	intron (NM_178665, intron 10 of 12)	-146474.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-111122762-4	chr7	111122640	111122840	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015573)	promoter-TSS (NR_015573)	-65.0	NR_015573	75479.0	Mm.381620	NR_015573	ENSMUSG00000110424	1700012D14Rik	-	RIKEN cDNA 1700012D14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-120587296-2	chr5	120587196	120587396	+	858.1999509999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_145853, intron 1 of 27)	intron (NM_145853, intron 1 of 27)	1317.0	NM_145853	252972.0	Mm.114054	NM_145853	ENSMUSG00000032741	Tpcn1	5730403B01Rik|Tpc1|mKIAA1169	two pore channel 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-57280583-4	chr17	57280484	57280684	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163816, intron 1 of 25)	intron (NM_001163816, intron 1 of 25)	1484.0	NM_001163815	22324.0	Mm.248172	NM_011691	ENSMUSG00000034116	Vav1	Vav|vav-T	vav 1 oncogene	protein-coding	6.03519526532535	5.65162415101606	6.06151966392622	5.54591999293105	6.11806292293018	6.11894219121791	5.95488816736519	5.90997836734032	0.20197686297696	0.397612859302181	0.883903683534674
Merged-chr7-118111222-2	chr7	118111175	118111375	+	847.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_170669, intron 3 of 4)	intron (NM_170669, intron 3 of 4)	4872.0	NM_170669	267019.0	Mm.288212	NM_170669	ENSMUSG00000008683	Rps15a	A630031B11Rik	ribosomal protein S15A	protein-coding	0.48381633965855	0.481094820140198	0.569814687670993	0.142753333055825	0.271857638884637	0.152870921780401	0.147767743999615	0.543494274696855	-1.05391296434351	0.584063924440949	1
Merged-chr4-9825673-1	chr4	9825573	9825773	+	549.0	f1_c57bl6.idr	Intergenic	Intergenic	-18699.0	NM_013526	242316.0	Mm.302555	NM_013526	ENSMUSG00000051279	Gdf6	BMP-13|BMP13|GDF16	growth differentiation factor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21715460-4	chr9	21715351	21715551	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8125.0	NM_001252658	16835.0	Mm.3213	NM_010700	ENSMUSG00000032193	Ldlr	Hlb301	low density lipoprotein receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-95664599-2	chr1	95664499	95664699	+	813.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159745, intron 1 of 3)	intron (NM_001159745, intron 1 of 3)	2995.0	NM_009183	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-45270229-4	chr2	45270129	45270329	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-152787.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116274166-4	chr11	116274055	116274255	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146032)	promoter-TSS (NM_146032)	62.0	NM_146032	217337.0	Mm.29655	NM_146032	ENSMUSG00000020780	Srp68	2610024I03Rik	signal recognition particle 68	protein-coding	4.23079053328349	4.39903199320506	4.26172109116607	4.67187841147368	3.37789040470039	3.70622195960127	3.75770750070757	4.05645041787116	-0.897035638658577	0.0394902453972843	0.282699262694879
Merged-chr7-113378104-4	chr7	113378005	113378205	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-8766.0	NM_133700	68815.0	Mm.238034	NM_133700	ENSMUSG00000038187	Btbd10	1110056N09Rik|Gmrp1	BTB (POZ) domain containing 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-92959166-2	chr16	92959066	92959266	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-133092.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-66828868-4	chr4	66828778	66828978	+	986.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021297, intron 1 of 2)	intron (NM_021297, intron 1 of 2)	1327.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	3.48749269428343	3.18001854005694	2.62667098828349	2.41116847184079	2.94505517192595	2.99362313253089	2.33728486168511	3.51432558827317	0.0234352226633474	0.972956639473846	0.998431161219273
Merged-chr11-79287699-4	chr11	79287592	79287792	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32997.0	NM_019653	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-32999822-2	chr19	32999722	32999922	+	627.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-157290.0	NR_039552	100628575.0		NR_039552	ENSMUSG00000106278	Mir3970	mmu-mir-3970|mu-mir-3970	microRNA 3970	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35188788-1	chr17	35188688	35188888	+	681.0	f1_balb.idr	promoter-TSS (NM_010734)	promoter-TSS (NM_010734)	-348.0	NM_010734	16988.0	Mm.19379	NM_010734	ENSMUSG00000073412	Lst1	B144	leukocyte specific transcript 1	protein-coding	1.30964315634871	1.88751281092621	0.840663306424633	0.825484836545691	1.44857432263574	2.19435252508548	1.59049630846073	0.828164419206726	0.979999811652896	0.470602347688932	0.925762173358338
Merged-chr3-51343369-2	chr3	51343269	51343469	+	892.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1H|LTR|ERVL-MaLR	-2725.0	NM_023502	69257.0	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90470385-2	chr2	90470285	90470485	+	805.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 3 of 23)	MIR3|SINE|MIR	8789.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-113445690-3	chr2	113445656	113445856	+	962.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285459, intron 2 of 16)	intron (NM_001285459, intron 2 of 16)	4692.0	NM_001285459	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	2.65950084143077	2.06988938907421	3.04450330339532	3.85319087701349	4.30866629343899	3.18483332393856	3.72721399221646	4.63444076036561	1.47242944702759	0.018272483492782	0.168554528662019
Merged-chr11-3126765-1	chr11	3126665	3126865	+	743.0	f1_c57bl6.idr	intron (NR_003517, intron 2 of 6)	intron (NR_003517, intron 2 of 6)	2744.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-26640660-4	chr11	26640550	26640750	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46730.0	NM_001252447	69922.0	Mm.285351	NM_027260	ENSMUSG00000064090	Vrk2	2810003O05Rik|AI447698	vaccinia related kinase 2	protein-coding	5.44213709594969	6.53784248174288	5.62497423396104	5.51688491196912	5.6690570453758	5.65571266333417	6.00741382890248	4.57911954097403	-0.317865646098769	0.348458920267443	0.848378678037495
Merged-chr17-26492676-1	chr17	26492576	26492776	+	1000.0	f1_balb.idr	Intergenic	Intergenic	15796.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	1.28306278340227	1.5747466609788	0.880028912899323	1.57763023344511	1.2934865261244	1.58754743091953	0.883046080838737	1.47924273980957	-0.0858893105497478	0.947493220197781	0.998431161219273
Merged-chr4-109360914-3	chr4	109360808	109361008	+	841.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007943, intron 13 of 24)	L2|LINE|L2	17852.0	NM_001159964	13858.0	Mm.318250	NM_007943	ENSMUSG00000028552	Eps15	2410112D09Rik	epidermal growth factor receptor pathway substrate 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-112952920-2	chr5	112952820	112953020	+	626.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285806, intron 9 of 20)	intron (NM_001285806, intron 9 of 20)	-56558.0	NM_028901	74376.0	Mm.441903	NM_028901	ENSMUSG00000072720	Myo18b	4932408L24Rik|4933411E19Rik|Gm448	myosin XVIIIb	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16895230-4	chr7	16895141	16895341	+	998.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010320, exon 4 of 4)	exon (NM_010320, exon 4 of 4)	3455.0	NM_010320	14709.0	Mm.103770	NM_010320	ENSMUSG00000063594	Gng8	G(y)8	guanine nucleotide binding protein (G protein), gamma 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-51512223-2	chr3	51512123	51512323	+	581.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	28257.0	NM_016858	19338.0	Mm.1664	NM_016858	ENSMUSG00000027739	Rab33b	-	RAB33B, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-36043565-1	chr17	36043465	36043665	+	545.0	f1_c57bl6.idr	promoter-TSS (NM_001347382)	promoter-TSS (NM_001347382)	604.0	NM_001034909	547347.0	Mm.484641	NM_001034909	ENSMUSG00000073407	Gm6034	EG547347|H2-gs14-2	predicted gene 6034	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-108003737-2	chr9	108003637	108003837	+	950.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013785, intron 1 of 5)	intron (NM_013785, intron 1 of 5)	1089.0	NM_013785	27399.0	Mm.276155	NM_013785	ENSMUSG00000032594	Ip6k1	1200016D08Rik|AU022776|Ihpk1|InsP6|InsP6k1|Itpk6	inositol hexaphosphate kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-47020863-2	chr4	47020764	47020964	+	844.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001024136, intron 13 of 14)	intron (NM_001024136, intron 13 of 14)	-29150.0	NM_001081141	242425.0	Mm.101909	NM_001081141	ENSMUSG00000039809	Gabbr2	GABABR2|Gb2|Gm425|Gpr51	gamma-aminobutyric acid (GABA) B receptor, 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-122571889-2	chr6	122571789	122571989	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	18080.0	NM_009645	11628.0	Mm.391503	NM_009645	ENSMUSG00000040627	Aicda	Aid|Arp2	activation-induced cytidine deaminase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90524720-2	chr2	90524571	90524771	+	810.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	-45497.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	-1.50561175621786	-1.47331375025452	-1.02203377115094	-1.49110398925286	-1.50334449591826	-1.47119716082604	-1.48086985756939	-1.48966786617048	-2.07776723614574	0.550394407909386	1
Merged-chr1-183345465-4	chr1	183345372	183345572	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177389, intron 6 of 26)	CpG	24093.0	NM_177389	338366.0	Mm.41152	NM_177389		Mia3	9130229H14Rik|A930039G15Rik|AU022327|B230399H06Rik|C80126|Gm1525|TANGO1|Tango	melanoma inhibitory activity 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135196005-2	chr5	135195905	135196105	+	732.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_011714, intron 1 of 18)	B3|SINE|B2	8682.0	NM_011714	22385.0	Mm.40331	NM_011714	ENSMUSG00000002748	Baz1b	C87820|WSTF|Wbscr9	bromodomain adjacent to zinc finger domain, 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-48038480-2	chr4	48038380	48038580	+	583.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6825.0	NM_015743	18124.0	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-130107508-4	chr4	130107414	130107614	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026441)	promoter-TSS (NM_026441)	-42.0	NM_026441	67898.0	Mm.20818	NM_026441	ENSMUSG00000028779	Pef1	2600002E23Rik|Peflin	penta-EF hand domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-86679967-1	chr4	86679867	86680067	+	875.5	f0_balb.idr	Intergenic	Intergenic	-9908.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	-0.166995773658805	-0.394272287389438	-0.104620422050239	-0.399958973068965	-0.161146009673805	-0.393542785869343	-0.0979894186178302	-0.399529210836714	0.041178952356401	0.986354766239776	1
Merged-chr5-150674853-2	chr5	150674753	150674953	+	954.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175310, intron 1 of 34)	intron (NM_175310, intron 1 of 34)	1026.0	NM_001346503	100710.0	Mm.32959	NM_175310	ENSMUSG00000034021	Pds5b	AI646570|AS3|AW212954|Aprin|Tg(Wap-ERBB2)229Wzw|WAP-Her-2|mKIAA0979	PDS5 cohesin associated factor B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-158550337-2	chr2	158550237	158550437	+	756.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145015, intron 14 of 14)	intron (NM_001145015, intron 14 of 14)	37541.0	NM_001145015	545481.0	Mm.125371	NM_001145015	ENSMUSG00000074625	Arhgap40	C20orf95|Gm14203	Rho GTPase activating protein 40	protein-coding	0.473354273157796	1.47043886710012	1.17926974157429	0.489620619322075	0.814280958199145	1.48583623731838	0.501924636884372	0.491306828721565	-0.342405840543018	0.840537154667499	0.998431161219273
Merged-chr12-100777742-2	chr12	100777642	100777842	+	862.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A3|LTR|ERVL-MaLR	-1315.0	NM_001361023	217830.0	Mm.218590	NM_145448	ENSMUSG00000021185	Dglucy	9030617O03Rik	D-glutamate cyclase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-21109406-2	chr15	21109346	21109546	+	693.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2006.0	NM_001008420	215654.0	Mm.300909	NM_001008420	ENSMUSG00000040452	Cdh12	Cdhb	cadherin 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-122833666-2	chr4	122833566	122833766	+	756.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-2561.0	NM_008917	19063.0	Mm.277719	NM_008917	ENSMUSG00000028657	Ppt1	9530043G02Rik|AA960502|C77813|CLN1|D4Ertd184e|INCL|PPT	palmitoyl-protein thioesterase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-55301047-2	chr12	55300980	55301180	+	801.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_021529, intron 2 of 13)	RMER10A|LTR|ERVL	-1557.0	NM_025373	66132.0	Mm.383213	NM_025373	ENSMUSG00000021023	1110008L16Rik	Kiaa0391|Mrpp3|mKIAA0391	RIKEN cDNA 1110008L16 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101464452-4	chr11	101464356	101464556	+	865.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012037, intron 1 of 5)	intron (NM_012037, intron 1 of 5)	1743.0	NM_012037	26949.0	Mm.29210	NM_012037	ENSMUSG00000034993	Vat1	VAT-1	vesicle amine transport 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-41923645-7	chr10	41923523	41923723	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034858, intron 15 of 17)	B1_Mus2|SINE|Alu	36184.0	NM_001013370	140742.0	Mm.139418	NM_001013370	ENSMUSG00000038332	Sesn1	1110002G11Rik|AU044290|Pa26|Sest1	sestrin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-152210916-4	chr3	152210801	152211001	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356364)	promoter-TSS (NM_001356364)	479.0	NM_001355374	51886.0	Mm.278922	NM_057172	ENSMUSG00000028034	Fubp1	9530027K12Rik|D3Ertd330e|FBP|Fubp|Fubp4	far upstream element (FUSE) binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-46371915-2	chr17	46371815	46372015	+	863.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MYSERV6-int|LTR|ERVK	-11851.0	NM_207671	57908.0	Mm.439916	NM_021346	ENSMUSG00000015597	Zfp318	2610034E08Rik|D530032D06Rik|TZF|Znf318	zinc finger protein 318	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-33999651-4	chr17	33999522	33999722	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001892, intron 2 of 7)	CpG-6270	711.0	NM_001001892	14972.0	Mm.422886	NM_001001892	ENSMUSG00000061232	H2-K1	H-2K|H-2K(d)|H2-K|K-f	histocompatibility 2, K1, K region	protein-coding	6.81488903827501	7.08799057569857	6.87232408597039	7.04310273172944	5.7388175522007	5.25211437131687	5.28258175569625	5.97572197158536	-1.45908574151864	5.71411144268849e-11	1.30173245106411e-08
Merged-chr13-5787306-4	chr13	5787206	5787406	+	812.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	70786.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-152104594-3	chr3	152104502	152104702	+	813.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016867, intron 4 of 5)	ID4_|SINE|ID	61298.0	NM_016867	54120.0	Mm.97	NM_016867	ENSMUSG00000039131	Gipc2	2200002N01Rik|AU021850|Semcap2	GIPC PDZ domain containing family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-149937989-4	chr1	149937919	149938119	+	897.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008869, intron 1 of 17)	MTD|LTR|ERVL-MaLR	-15580.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-124924480-1	chr8	124924380	124924580	+	935.3333130000001	f0_balb.idr	intron (NM_053207, intron 1 of 4)	MIRc|SINE|MIR	24774.0	NM_053207	112405.0	Mm.140619	NM_053207	ENSMUSG00000031987	Egln1	AI503754|C1orf12|HIF-PH2|HPH-2|Hif-p4h-2|ORF13|Phd2|SM-20	egl-9 family hypoxia-inducible factor 1	protein-coding	1.99895838926313	1.89955649003192	2.01323768997215	2.23036284855975	2.51523817193126	2.39070080408516	2.02831453059234	3.05395764907185	1.21426429313605	0.150161683415981	0.602305959756336
Merged-chr4-141656332-4	chr4	141656225	141656425	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347237, intron 1 of 18)	intron (NM_001347237, intron 1 of 18)	7790.0	NM_001347237	69582.0	Mm.33220	NM_001033150	ENSMUSG00000028917	Plekhm2	2310034J19Rik|AI854247|mKIAA0842	pleckstrin homology domain containing, family M (with RUN domain) member 2	protein-coding	5.67187702234883	5.79028472158524	5.86634347285616	5.66491907825849	5.78381043053415	5.90205859430919	5.04816792307439	5.49173189467253	-0.174038804795558	0.515975400532755	0.947402641287243
Merged-chr7-19879969-2	chr7	19879869	19880069	+	877.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_177036, intron 5 of 6)	IMPB_01|Satellite|Satellite	7996.0	NM_177036	319930.0	Mm.215839	NM_177036	ENSMUSG00000049848	Ceacam19	C130022P09Rik|CEAL1	carcinoembryonic antigen-related cell adhesion molecule 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-52424913-4	chr2	52424825	52425025	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_182994)	promoter-TSS (NM_182994)	-51.0	NM_182994	75423.0	Mm.314378	NM_182994	ENSMUSG00000036093	Arl5a	2410015N24Rik|2810410P22Rik|AA408731|AW610751|Arl5|T25534	ADP-ribosylation factor-like 5A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124903796-4	chr6	124903699	124903899	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008479)	TTS (NM_008479)	7906.0	NM_008479	16768.0	Mm.4528	NM_008479	ENSMUSG00000030124	Lag3	CD223|LAG-3|Ly66	lymphocyte-activation gene 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70410149-4	chr11	70410017	70410217	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029231)	promoter-TSS (NM_029231)	-86.0	NM_029231	75273.0	Mm.340601	NM_029231	ENSMUSG00000018921	Pelp1	4930563C04Rik|MNAR	proline, glutamic acid and leucine rich protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-119976590-2	chr9	119976490	119976690	+	590.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357562, intron 2 of 4)	PB1D9|SINE|Alu	6433.0	NM_001357560	215418.0	Mm.491094	NM_153287	ENSMUSG00000032515	Csrnp1	4931429D10Rik|Axud1|CSRNP-1|URAX1|taip-3	cysteine-serine-rich nuclear protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-81161911-2	chr7	81161811	81162011	+	899.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001004184, intron 12 of 17)	B2_Mm2|SINE|B2	47112.0	NM_001004184	434203.0	Mm.389909	NM_001004184	ENSMUSG00000025726	Slc28a1	Cnt1	solute carrier family 28 (sodium-coupled nucleoside transporter), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43559878-4	chr4	43559794	43559994	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011602, intron 1 of 56)	intron (NM_011602, intron 1 of 56)	2689.0	NM_011602	21894.0	Mm.208601	NM_011602	ENSMUSG00000028465	Tln1	Tln	talin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-62397739-1	chr4	62397639	62397839	+	613.0	f0_balb.idr	intron (NM_139291, intron 3 of 3)	intron (NM_139291, intron 3 of 3)	10884.0	NM_139291	66440.0	Mm.109930	NM_139291	ENSMUSG00000066149	Cdc26	2010012C09Rik	cell division cycle 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-55511806-2	chr6	55511703	55511903	+	562.5	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	59825.0	NM_007407	11517.0	Mm.44245	NM_007407	ENSMUSG00000029778	Adcyap1r1	2900024I10Rik|AI846590|PAC1|PAC1R|PACAP1-R	adenylate cyclase activating polypeptide 1 receptor 1	protein-coding	2.51305727224781	2.02952454136025	3.78180918253155	3.40738216532077	1.9818486677388	3.71357583451895	1.4260023568687	2.42269813061204	-0.716967235267871	0.411116091523456	0.894256659801134
Merged-chr17-62649788-4	chr17	62649691	62649891	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010109, intron 2 of 3)	intron (NM_010109, intron 2 of 3)	231526.0	NM_207654	13640.0	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-136621413-1	chr4	136621313	136621513	+	983.0	f1_c57bl6.idr	Intergenic	Intergenic	-1208.0	NM_001243262	242707.0	Mm.448979	NM_001243262	ENSMUSG00000070683	Lactbl1	-	lactamase, beta-like 1	protein-coding	0.962517757532724	2.43140715684291	1.65138434955412	2.34748811238058	1.78220625555074	1.0501018801021	1.02454278323174	2.1942641778193	-0.9437846588916	0.447530078879883	0.914498173479176
Merged-chr4-140967141-2	chr4	140967041	140967241	+	632.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355515, intron 2 of 7)	intron (NM_001355515, intron 2 of 7)	5870.0	NM_023374	67680.0	Mm.246965	NM_023374	ENSMUSG00000009863	Sdhb	0710008N11Rik	succinate dehydrogenase complex, subunit B, iron sulfur (Ip)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36465666-2	chr18	36465566	36465766	+	572.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4|SINE|ID	-11171.0	NM_026027	67199.0	Mm.30184	NM_026027	ENSMUSG00000024346	Pfdn1	2700086I23Rik|AA408327|AU044714	prefoldin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-20312951-4	chr10	20312874	20313074	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025392, intron 1 of 12)	CpG	505.0	NM_001025393	72567.0	Mm.294783	NM_153787	ENSMUSG00000037608	Bclaf1	2610102K23Rik|2700025J07Rik|2810454G14Rik|5730534O06Rik|AI450190|AW556225|Btf|mKIAA0164	BCL2-associated transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141221841-4	chr7	141221734	141221934	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029793)	promoter-TSS (NR_029793)	-341.0	NR_029793	387206.0		NR_029793	ENSMUSG00000065551	Mir210	Mirn210|mir-210|mmu-mir-210	microRNA 210	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-13056357-4	chr17	13056258	13056458	+	916.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4078.0	NM_001013832	436440.0	Mm.335670	NM_001013832	ENSMUSG00000071311	Gpr31b	12-HETER|GPR31c(t)|Gpr31|Gpr31c	G protein-coupled receptor 31, D17Leh66b region	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-181240619-4	chr2	181240527	181240727	+	967.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_183162, exon 2 of 19)	exon (NM_183162, exon 2 of 19)	1400.0	NM_183162	229003.0	Mm.315872	NM_183162	ENSMUSG00000027580	Helz2	PDIP1|Pric285|mKIAA1769|mPDIP1	helicase with zinc finger 2, transcriptional coactivator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96583093-1	chr3	96582993	96583193	+	824.0	f1_balb.idr	intron (NM_027241, intron 1 of 7)	B3A|SINE|B2	11088.0	NM_027241	69870.0	Mm.292739	NM_027241	ENSMUSG00000028104	Polr3gl	2010003I19Rik	polymerase (RNA) III (DNA directed) polypeptide G like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-70475379-1	chr5	70475279	70475479	+	576.0	f1_balb.idr	Intergenic	L1_Mus4|LINE|L1	367238.0	NM_010252	14405.0	Mm.255292	NM_010252	ENSMUSG00000001260	Gabrg1	GabaA|GabaA/BZ	gamma-aminobutyric acid (GABA) A receptor, subunit gamma 1	protein-coding	1.50412702883411	0.826968853087022	0.809012801982921	2.24503088448235	1.14033459034685	0.830946609342738	1.4060187373521	1.71731110551719	-0.613176457450384	0.658311852981627	0.988786381080817
Merged-chr9-65032390-4	chr9	65032324	65032524	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028906)	promoter-TSS (NM_028906)	-34.0	NM_028906	74388.0	Mm.202749	NM_028906	ENSMUSG00000032393	Dpp8	2310004I03Rik|4932434F09Rik|AI666706|DPP VIII	dipeptidylpeptidase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26513295-4	chr17	26513208	26513408	+	972.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4836.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	2.60928657285995	2.53179534108558	1.85585305743095	2.48188317318572	1.89373845675661	2.42418410943524	3.1359159575065	1.61297886874631	0.0282559576089465	0.974434353150422	0.998431161219273
Merged-chr2-52952479-2	chr2	52952379	52952579	+	768.599976	f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	94611.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102386314-2	chr12	102386214	102386414	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177620, intron 8 of 9)	RSINE1|SINE|B4	53499.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-59220206-2	chr2	59220106	59220306	+	650.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 2 of 20)	intron (NM_175464, intron 2 of 20)	59356.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-11846936-2	chr9	11846836	11847036	+	600.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17B|LTR|ERVK	-942161.0	NM_001170787	244682.0	Mm.187021	NM_001033359	ENSMUSG00000039488	Cntn5	6720426O10Rik|A830025P08Rik|Gm507|NB-2	contactin 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-131965652-3	chr3	131965554	131965754	+	919.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-119638.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-126770250-4	chr3	126770125	126770325	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025439, intron 5 of 19)	intron (NM_001025439, intron 5 of 19)	173161.0	NM_001034168	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	3.29947612690604	3.61662980521135	3.57401304170523	4.09193163085906	3.52406100189417	3.02632594332136	2.02309478410804	3.41750735636299	-0.859622574143877	0.159193516977801	0.618391829904723
Merged-chr11-4188187-3	chr11	4188102	4188302	+	855.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134023, intron 1 of 8)	intron (NM_134023, intron 1 of 8)	1369.0	NM_134023	103724.0	Mm.28140	NM_134023	ENSMUSG00000034412	Tbc1d10a	AI447804|EPI64|Tbc1d10|mFLJ00288	TBC1 domain family, member 10a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-48314608-2	chr7	48314508	48314708	+	913.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2B2|LINE|L1	-73918.0	NM_207539	404240.0	Mm.357942	NM_207539	ENSMUSG00000050870	Mrgprb8	MrgB8	MAS-related GPR, member B8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-103050819-2	chr2	103050719	103050919	+	635.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175094, intron 2 of 10)	intron (NM_175094, intron 2 of 10)	22694.0	NM_175094	27402.0	Mm.315011	NM_175094	ENSMUSG00000010914	Pdhx	AI481367|E3bp|Pdx1	pyruvate dehydrogenase complex, component X	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-63424923-3	chr14	63424819	63425019	+	677.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7732.0	NM_007549	12143.0	Mm.3962	NM_007549	ENSMUSG00000014453	Blk	-	B lymphoid kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-24627478-2	chr7	24627378	24627578	+	754.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_001102613, intron 14 of 14)	intron (NM_001102613, intron 14 of 14)	-9092.0	NM_133743	72434.0	Mm.281093	NM_133743	ENSMUSG00000057454	Lypd3	2310061G07Rik|C4.4a	Ly6/Plaur domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-57581006-4	chr6	57580910	57581110	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025992)	promoter-TSS (NM_025992)	18.0	NM_025992	67138.0	Mm.297393	NM_025992	ENSMUSG00000029798	Herc6	1700121D12Rik|2510038N07Rik|4930427L17Rik|AI451296|CEB1|Herc5	hect domain and RLD 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76700482-2	chr15	76700382	76700582	+	741.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_182805)	TTS (NM_182805)	-1060.0	NM_027122	69572.0	Mm.34920	NM_027122	ENSMUSG00000019080	Mfsd3	2310010G13Rik	major facilitator superfamily domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-81574961-2	chr17	81574861	81575061	+	605.833374	f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 2 of 8)	intron (NR_104580, intron 2 of 8)	163426.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-69667935-4	chr16	69667833	69668033	+	953.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	132448.0	NR_130991	78110.0	Mm.211406	NR_130991	ENSMUSG00000107073	4930428D20Rik	Gm43265	RIKEN cDNA 4930428D20 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-34083022-1	chr11	34082922	34083122	+	542.0	f1_c57bl6.idr	intron (NM_010696, intron 16 of 20)	MTD|LTR|ERVL-MaLR	15532.0	NR_155520	76874.0	Mm.437529	NR_155520		4930469K13Rik	-	RIKEN cDNA 4930469K13 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-65102226-4	chr14	65102113	65102313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4107.0	NM_001360385	54616.0	Mm.103748	NM_018788	ENSMUSG00000021978	Extl3	2900009G18Rik|AU040105|Ext1l|mKIAA0519	exostoses (multiple)-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-153959663-3	chr3	153959583	153959783	+	789.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13753.0	NM_001081263	242259.0	Mm.239962	NM_001081263	ENSMUSG00000028360	Slc44a5	AA117069|Gm422	solute carrier family 44, member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-74999029-2	chr15	74998929	74999129	+	694.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271417)	promoter-TSS (NM_001271417)	-998.0	NM_010738	110454.0	Mm.425949	NM_010738	ENSMUSG00000075602	Ly6a	Ly-6A.2|Ly-6A/E|Ly-6E.1|Sca-1|Sca1|TAP	lymphocyte antigen 6 complex, locus A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-21347074-3	chr12	21346919	21347119	+	887.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001277266, intron 6 of 19)	intron (NM_001277266, intron 6 of 19)	26613.0	NR_102380	11491.0	Mm.27681	NM_009615	ENSMUSG00000052593	Adam17	CD156b|Tace	a disintegrin and metallopeptidase domain 17	protein-coding	1.33959063007038	3.32040290062385	1.49489305930384	2.36381001810614	3.83205501498923	4.06505513411618	3.32081672966006	4.05985236998341	2.42981877602105	0.00119847870142196	0.0224355523288464
Merged-chr1-105968232-2	chr1	105968120	105968320	+	669.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	22062.0	NR_151625	635504.0	Mm.359717	NR_151625		Gm7160	EG635504	predicted gene 7160	ncRNA	0.713293111513593	0.75007058883409	1.10341154862672	1.52592473419052	1.0255481054475	1.43936904014508	0.943523120315785	1.53537567168561	0.770562852711632	0.587056278523625	0.967957151188163
Merged-chr3-51046137-3	chr3	51046031	51046231	+	752.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-178316.0	NM_009834	12457.0	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-155710764-4	chr2	155710674	155710874	+	851.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145537, intron 8 of 10)	intron (NM_145537, intron 8 of 10)	-18390.0	NM_001163452	56407.0	Mm.234944	NM_019828	ENSMUSG00000038324	Trpc4ap	4833429F06Rik|D2Ertd113e|Trrp4ap|mFLJ00177|truss	transient receptor potential cation channel, subfamily C, member 4 associated protein	protein-coding	2.31704393083343	1.49454706279438	2.88342914868452	2.1641159980393	1.5436464527614	1.90918364176047	1.20373825224086	2.1758477897223	-1.37927373407492	0.174060384462696	0.641919003929331
Merged-chr6-140611167-2	chr6	140611067	140611267	+	624.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-11496.0	NM_178803	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-93028878-4	chr16	93028761	93028961	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-202787.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-79017480-4	chr12	79017390	79017590	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10213.0	NM_178745	268567.0	Mm.341747	NM_178745	ENSMUSG00000046157	Tmem229b	6330442E10Rik|9830138K24|AU019070	transmembrane protein 229B	protein-coding	4.68598092725267	4.82674267934204	4.2000673341284	4.83755479221902	4.5405455265679	4.76516853169558	3.68178355485341	4.92915301695801	-0.129878329275335	0.744101966127732	0.998431161219273
Merged-chr17-56612098-4	chr17	56611992	56612192	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1303.0	NM_018730	54217.0	Mm.11376	NM_018730	ENSMUSG00000057863	Rpl36	-	ribosomal protein L36	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-21849860-1	chr10	21849760	21849960	+	675.0	f1_balb.idr	Intergenic	Intergenic	-32324.0	NM_001161845	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	1.20641264191524	1.15954777041185	0.944454444516251	0.93532500553673	2.12734406136809	1.50602504497576	0.947064977586966	2.1348530089023	3.24542279564214	0.0231153430832976	0.198151399007427
Merged-chr3-51720445-3	chr3	51720355	51720555	+	966.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 2 of 4)	RMER19A|LTR|ERVK	59276.0	NM_001310482	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70654633-4	chr11	70654535	70654735	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011072)	promoter-TSS (NM_011072)	15.0	NM_011072	18643.0	Mm.2647	NM_011072	ENSMUSG00000018293	Pfn1	Pfn	profilin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-60741609-2	chr13	60741509	60741709	+	663.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 19 of 26)	intron (NM_134062, intron 19 of 26)	44755.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-82969924-2	chr11	82969824	82970024	+	610.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9243.0	NR_045932	76392.0	Mm.295205	NR_045932	ENSMUSG00000086327	Slfn5os	1700003F17Rik	schlafen 5, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-61020127-3	chr9	61020017	61020217	+	881.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_040767)	TTS (NR_040767)	3048.0	NR_040767	330956.0	Mm.207985	NR_040767	ENSMUSG00000111290	Gm5122	A430102L10	predicted gene 5122	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-73327497-2	chr11	73327397	73327597	+	826.625	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-2244.0	NM_001045531	380709.0	Mm.340910	NM_001045531	ENSMUSG00000112920	Spata22	Gm882	spermatogenesis associated 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-46317920-2	chr16	46317820	46318020	+	613.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-162843.0	NM_001304528	11615.0	Mm.330692	NM_001304528	ENSMUSG00000048087	Gm4737	AL024110|EG11615	predicted gene 4737	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-135914438-4	chr7	135914343	135914543	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-198064.0	NM_001081117	17345.0	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19699133-4	chr7	19698995	19699195	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009696)	promoter-TSS (NM_009696)	93.0	NM_001305843	11816.0	Mm.305152	NM_009696	ENSMUSG00000002985	Apoe	AI255918|Apo-E	apolipoprotein E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-24620588-4	chr4	24620499	24620699	+	978.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355618, intron 9 of 9)	intron (NM_001355618, intron 9 of 9)	124148.0	NM_199467	212377.0	Mm.120919	NM_199467	ENSMUSG00000045751	Mms22l	F730047E07Rik|Gm134	MMS22-like, DNA repair protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-9747616-2	chr15	9747516	9747716	+	706.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001305042, intron 1 of 36)	intron (NM_001305042, intron 1 of 36)	1252.0	NM_177123	320277.0	Mm.127822	NM_177123	ENSMUSG00000072663	Spef2	C230086A09Rik	sperm flagellar 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-38483522-4	chr2	38483417	38483617	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28180.0	NM_021606	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96284633-3	chr3	96284536	96284736	+	865.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010186, intron 5 of 5)	intron (NM_010186, intron 5 of 5)	9333.0	NM_010186	14129.0	Mm.150	NM_010186	ENSMUSG00000015947	Fcgr1	AI323638|AV092959|CD64|FcgammaRI|IGGHAFC	Fc receptor, IgG, high affinity I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-71008023-3	chr12	71007931	71008131	+	812.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045055, intron 3 of 3)	intron (NR_045055, intron 3 of 3)	7792.0	NR_045056	73204.0	Mm.363770	NR_045055	ENSMUSG00000085622	3110056K07Rik	4921536K06Rik	RIKEN cDNA 3110056K07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-138964066-3	chr3	138963967	138964167	+	842.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356388, intron 5 of 13)	intron (NM_001356388, intron 5 of 13)	111134.0	NM_145544	229877.0	Mm.28893	NM_145544	ENSMUSG00000028149	Rap1gds1	BC011279|GDS1	RAP1, GTP-GDP dissociation stimulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-140882352-4	chr7	140882255	140882455	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177804)	promoter-TSS (NM_001177804)	-39.0	NM_011875	23997.0	Mm.29760	NM_011875	ENSMUSG00000025487	Psmd13	S11	proteasome (prosome, macropain) 26S subunit, non-ATPase, 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-102052369-4	chr5	102052258	102052458	+	896.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 1 of 66)	intron (NM_172882, intron 1 of 66)	17563.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45593275-4	chr7	45593161	45593361	+	977.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18085.0	NR_038165	71661.0	Mm.439894	NR_038165	ENSMUSG00000109644	0610005C13Rik	AI182092	RIKEN cDNA 0610005C13 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-22022470-3	chr13	22022371	22022571	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	tRNA-Ser-TCG|tRNA|tRNA	-12730.0	NM_019429	54373.0	Mm.32043	NM_019429	ENSMUSG00000006179	Prss16	AI448615|TSSP	protease, serine 16 (thymus)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-12867742-3	chr10	12867573	12867773	+	942.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5938.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3686451-2	chr4	3686351	3686551	+	587.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 1 of 12)	intron (NM_001111096, intron 1 of 12)	8330.0	NM_010747	17096.0	Mm.317331	NM_010747	ENSMUSG00000042228	Lyn	AA407514|Hck-2|p53Lyn|p56Lyn	LYN proto-oncogene, Src family tyrosine kinase	protein-coding	-0.128371109707251	-0.183661644343759	-0.366599580010982	-0.369320456628144	0.156333830724773	-0.179340074625164	-0.36581947950233	-0.368846021508186	0.941721092926339	0.694598045957657	1
Merged-chr2-93782896-2	chr2	93782796	93782996	+	565.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355076, intron 7 of 10)	intron (NM_001355076, intron 7 of 10)	39672.0	NM_010163	14043.0	Mm.4336	NM_010163	ENSMUSG00000027198	Ext2	AI893565	exostoses (multiple) 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-74131041-2	chr1	74130941	74131141	+	675.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001034060, intron 6 of 11)	intron (NM_001034060, intron 6 of 11)	5500.0	NM_001034060	435626.0	Mm.240447	NM_001034060	ENSMUSG00000061815	Rufy4	F930048N03Rik	RUN and FYVE domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-32067888-4	chr18	32067771	32067971	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_173441, exon 1 of 14)	5' UTR (NM_173441, exon 1 of 14)	137.0	NM_173441	73473.0	Mm.66853	NM_173441	ENSMUSG00000024384	Iws1	1700069O15Rik|3000008H23|AL117927|AW214353	IWS1, SUPT6 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-101937380-2	chr5	101937280	101937480	+	975.625	f1_balb.idr|f1_c57bl6.idr	exon (NM_172882, exon 14 of 67)	exon (NM_172882, exon 14 of 67)	132541.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-105354230-3	chr5	105354106	105354306	+	835.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7730.0	NR_132129	634650.0	Mm.458435	NM_001039647	ENSMUSG00000092021	Gbp11	EG634650|Gm7141	guanylate binding protein 11	protein-coding	3.16321838446728	3.46076361086238	3.8199447507698	3.07771683634593	3.56783556767687	3.39742008482779	2.5759835173455	2.13473489285358	-0.581823183631601	0.372077270965782	0.865109408625856
Merged-chr4-148956526-1	chr4	148956426	148956626	+	548.0	f1_balb.idr	Intergenic	Intergenic	-4204.0	NR_154553	108168987.0	Mm.393596	NR_154553		Gm13205	AA408865	predicted gene 13205	ncRNA	0.350235738082013	0.376025234530951	1.17890032269174	0.93330855901729	0.647792318760496	0.377905038703905	0.987589240645644	0.362277113077953	-0.757406983867904	0.679730257176391	1
Merged-chr1-128615634-3	chr1	128615559	128615759	+	980.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23360.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	2.50133286710044	3.26134474554008	2.07450542648207	1.78442531009859	3.5127468739543	3.19022972625351	3.79108340466421	2.98550037410787	1.5377613655648	0.0304380851246244	0.239525237423641
Merged-chr16-58408349-4	chr16	58408216	58408416	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028523)	promoter-TSS (NM_028523)	-219.0	NM_001356484	73379.0	Mm.373589	NM_028523	ENSMUSG00000035107	Dcbld2	1700055P21Rik|AW146002|CLCP1|Esdn	discoidin, CUB and LCCL domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-25816633-2	chr14	25816533	25816733	+	643.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25522.0	NM_013469	11744.0	Mm.294083	NM_013469	ENSMUSG00000021866	Anxa11	A830099O17Rik|Anx11	annexin A11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81508301-2	chr10	81508201	81508401	+	697.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_010304, intron 5 of 6)	intron (NM_010304, intron 5 of 6)	-8164.0	NM_010102	13611.0	Mm.33065	NM_010102	ENSMUSG00000044199	S1pr4	Edg6|Lpc1|S1p4	sphingosine-1-phosphate receptor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44346647-2	chr9	44346547	44346747	+	576.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2419.0	NM_013551	15288.0	Mm.247676	NM_013551	ENSMUSG00000032126	Hmbs	PBGD|T25658|Ups|Uros1	hydroxymethylbilane synthase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-110775407-2	chr5	110775307	110775507	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359219, intron 4 of 5)	intron (NM_001359219, intron 4 of 5)	4458.0	NR_152254	100504049.0	Mm.474515	NR_152254	ENSMUSG00000086401	Gm15559	-	predicted gene 15559	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-64140567-2	chr7	64140476	64140676	+	643.0	f0_balb.idr|f0_c57.idr	Intergenic	MER2|DNA|TcMar-Tigger	-13259.0	NM_001039104	17364.0	Mm.38875	NM_018752	ENSMUSG00000030523	Trpm1	4732499L03Rik|AI606771|Ltrpc1|Mlsn1	transient receptor potential cation channel, subfamily M, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-155144905-2	chr1	155144805	155145005	+	909.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008209, intron 1 of 5)	LTR33|LTR|ERVL	1909.0	NM_001355063	15064.0	Mm.7580	NM_008209	ENSMUSG00000026471	Mr1	H2ls	major histocompatibility complex, class I-related	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-52525058-4	chr12	52524955	52525155	+	974.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009706, intron 1 of 5)	intron (NM_009706, intron 1 of 5)	8978.0	NM_009706	11855.0	Mm.35059	NM_009706	ENSMUSG00000035133	Arhgap5	p190-B|p190B	Rho GTPase activating protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-30550169-3	chr17	30550068	30550268	+	891.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172618, intron 1 of 11)	B3A|SINE|B2	26119.0	NM_172618	224671.0	Mm.41220	NM_027060	ENSMUSG00000062202	Btbd9	1700023F20Rik|4930402L05|AI464421	BTB (POZ) domain containing 9	protein-coding	0.52847017809245	0.777372891162222	0.26895363867316	0.263594627052736	0.748991221587802	0.277438522988361	0.270483155315847	1.00315127075723	0.851414164903153	0.65661548179108	1
Merged-chr13-33964596-4	chr13	33964458	33964658	+	974.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163241)	promoter-TSS (NM_001163241)	-101.0	NM_001163239	18105.0	Mm.264036	NM_020282	ENSMUSG00000046949	Nqo2	NMO2|Nmor2|Ox2	N-ribosyldihydronicotinamide quinone reductase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166674848-3	chr2	166674746	166674946	+	784.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	GC_rich|Low_complexity|Low_complexity	38986.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-154062778-1	chr1	154062678	154062878	+	822.333313	f0_balb.idr	Intergenic	Intergenic	-138409.0	NM_001204908	100503355.0	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	Gm10178|Gm203	zinc finger protein 648	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-66794438-1	chr4	66794338	66794538	+	638.0	f0_balb.idr	Intergenic	Intergenic	-33113.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-117211593-1	chr5	117211493	117211693	+	548.0	f1_balb.idr	intron (NM_001081308, intron 8 of 19)	RMER1B|Other|Other	75971.0	NM_018858	23980.0	Mm.195898	NM_018858	ENSMUSG00000032959	Pebp1	HCNP|Pbp|Pbp1|Pbpr|Rkip	phosphatidylethanolamine binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-96977888-2	chr7	96977802	96978002	+	648.666626	f0_balb.idr|f0_c57.idr	intron (NM_153591, intron 5 of 13)	intron (NM_153591, intron 5 of 13)	26375.0	NM_153591	244141.0	Mm.274864	NM_153591	ENSMUSG00000018995	Nars2	AI875199	asparaginyl-tRNA synthetase 2 (mitochondrial)(putative)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-30787882-4	chr10	30787763	30787963	+	790.216675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358842, intron 1 of 14)	intron (NM_001358842, intron 1 of 14)	15463.0	NM_001358841	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-31838281-7	chr16	31838208	31838408	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357281, intron 13 of 22)	intron (NM_001357281, intron 13 of 22)	-40502.0	NM_013900	30060.0	Mm.30988	NM_013900	ENSMUSG00000022780	Meltf	CD228|MTf|Mfi2	melanotransferrin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-135670710-3	chr3	135670619	135670819	+	901.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008689, intron 1 of 24)	intron (NM_008689, intron 1 of 24)	20828.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-62218250-4	chr14	62218152	62218352	+	924.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	74727.0	NM_173419	239133.0	Mm.127330	NM_173419	ENSMUSG00000048281	Dleu7	BC038059	deleted in lymphocytic leukemia, 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-62542814-4	chr11	62542716	62542916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB4|LINE|L1	-3555.0	NM_028448	73139.0	Mm.390409	NM_028448	ENSMUSG00000018509	Cenpv	3110013H01Rik|AA671303|Prr6	centromere protein V	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-39490283-2	chr18	39490183	39490383	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-3038.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126748584-1	chr8	126748484	126748684	+	592.0	f1_c57bl6.idr	Intergenic	Intergenic	-100436.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0.74417985628912	0.560293572699813	1.4386517913236	0.321676919643745	0.96473426463604	0.340615230069569	0.331147686828367	0.322971114057457	-1.60290974618731	0.380613397153121	1
Merged-chr19-5724208-2	chr19	5724108	5724308	+	916.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114595, intron 1 of 17)	intron (NM_001114595, intron 1 of 17)	2109.0	NM_001114595	114601.0	Mm.210447	NM_053252	ENSMUSG00000024937	Ehbp1l1	G430002G23Rik	EH domain binding protein 1-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107558108-1	chr9	107558008	107558208	+	735.0	f1_c57bl6.idr	intron (NM_001243748, intron 4 of 5)	intron (NM_001243748, intron 4 of 5)	3525.0	NM_019713	56289.0	Mm.12091	NM_019713	ENSMUSG00000010067	Rassf1	123F2|AA536941|AU044980|NORE2A|RDA32|REH3P21|Rassf1A|Rassf1B|Rassf1C	Ras association (RalGDS/AF-6) domain family member 1	protein-coding	-0.670950874894612	-0.320597300650557	-0.803047711104758	-0.805269517958193	-0.545562041706143	-0.797724068301104	-0.802411283126922	-0.804881878203083	-1.20302993619305	0.672100983140737	1
Merged-chr11-116597257-2	chr11	116597157	116597357	+	926.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_172572)	TTS (NM_172572)	3570.0	NM_009591	11298.0	Mm.42233	NM_009591	ENSMUSG00000020804	Aanat	AA-NAT|Nat-2|Nat4|Snat	arylalkylamine N-acetyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102375165-2	chr12	102375065	102375265	+	992.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_177620, intron 7 of 9)	intron (NM_177620, intron 7 of 9)	64648.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	-1.8429182434137	-1.8129848525291	-1.82203695700074	-1.54461076807193	-1.84081697472045	-1.81102322372834	-1.81998775896484	-1.82814164409203	-1.43114970378833	0.684630132144154	1
Merged-chr12-85335946-2	chr12	85335846	85336046	+	699.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145138, intron 2 of 21)	B1F|SINE|Alu	3416.0	NM_145138	217718.0	Mm.29071	NM_145138	ENSMUSG00000034290	Nek9	C130021H08Rik	NIMA (never in mitosis gene a)-related expressed kinase 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-31177033-4	chr6	31176942	31177142	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110470, intron 2 of 2)	intron (NR_110470, intron 2 of 2)	41432.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-3754474-4	chr8	3754399	3754599	+	787.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	SSU-rRNA_Hsa|rRNA|rRNA	-5515.0	NM_133238	170786.0	Mm.32510	NM_133238	ENSMUSG00000031494	Cd209a	CD209|CDSIGN|CIRE|DC-SIGN|DC-SIGN1|Dcsign|SIGN-R1|SIGNR5	CD209a antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-142397410-2	chr7	142397319	142397519	+	665.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9549.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	0.792590744055268	1.17404716739721	0.407089977921069	0.400598441618756	0.906570178932456	1.07485956016966	0.408940229393734	0.401734682094624	-0.0221022626344966	0.990248594650956	1
Merged-chr14-36423307-2	chr14	36423207	36423407	+	590.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13D3A|LTR|ERVK	328342.0	NM_175008	218921.0	Mm.212464	NM_175008	ENSMUSG00000096405	4930474N05Rik	-	RIKEN cDNA 4930474N05 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-33215061-4	chr14	33214971	33215171	+	796.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1752.0	NM_153800	239027.0	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-119388806-4	chr6	119388727	119388927	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355692)	promoter-TSS (NM_001355692)	-93.0	NM_001355692	68465.0	Mm.291826	NM_197985	ENSMUSG00000030168	Adipor2	1110001I14Rik|ADCR2|AI115388|AW554121|D6Ucla1e|Paqr2	adiponectin receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-138184852-2	chr4	138184765	138184965	+	691.958374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355700, intron 23 of 30)	intron (NM_001355700, intron 23 of 30)	21656.0	NR_105825	102466907.0		NR_105825	ENSMUSG00000098513	Mir6399	Gm27667|mir-6399|mmu-mir-6399	microRNA 6399	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-151977944-4	chr4	151977840	151978040	+	838.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172704, intron 11 of 15)	intron (NM_172704, intron 11 of 15)	11046.0	NM_175152	69876.0	Mm.226820	NM_175152	ENSMUSG00000039759	Thap3	2010013E08Rik|2210418H06Rik	THAP domain containing, apoptosis associated protein 3	protein-coding	2.79775594065524	2.9350948911512	1.54834986602771	3.34906895327817	3.44202367814683	3.77877017130375	2.45066347809817	2.51620662507822	0.624616032603585	0.419330058440524	0.899271098874418
Merged-chr6-83634227-4	chr6	83634121	83634321	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21895.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167682071-2	chr2	167681971	167682171	+	544.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6844.0	NM_009883	12608.0	Mm.439656	NM_009883	ENSMUSG00000056501	Cebpb	C/EBPbeta|CRP2|IL-6DBP|LAP|LIP|NF-IL6|NF-M|Nfil6	CCAAT/enhancer binding protein (C/EBP), beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80028437-2	chr10	80028378	80028578	+	694.041626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347074, intron 19 of 22)	intron (NM_001347074, intron 19 of 22)	8803.0	NM_027521	70719.0	Mm.243954	NM_027521	ENSMUSG00000035697	Arhgap45	6330406L22Rik|AW539505|Ha-1|Hmha1	Rho GTPase activating protein 45	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-135653263-2	chr7	135653163	135653363	+	694.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015548)	promoter-TSS (NR_015548)	-949.0	NR_015548	67765.0	Mm.445272	NR_015548	ENSMUSG00000097471	5830432E09Rik	-	RIKEN cDNA 5830432E09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-43293318-4	chr5	43293208	43293408	+	961.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57954.0	NR_028417	665934.0	Mm.381491	NR_028417	ENSMUSG00000085720	Gm7854	EG665934	predicted gene 7854	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-120529684-2	chr5	120529584	120529784	+	752.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177595, intron 13 of 13)	intron (NM_001177595, intron 13 of 13)	18492.0	NM_001177594	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-57902938-2	chr15	57902838	57903038	+	711.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9261.0	NM_001081396	210544.0	Mm.390835	NM_199300	ENSMUSG00000022364	Tbc1d31	4B3|D330013L20Rik|Gm85|Wdr67	TBC1 domain family, member 31	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-84020214-4	chr6	84020114	84020314	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310152, intron 1 of 53)	intron (NM_001310152, intron 1 of 53)	828.0	NM_021469	26903.0	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-3020170-2	chr9	3020055	3020255	+	700.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	GSAT_MM|Satellite|Satellite	18588.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-154596695-4	chr3	154596609	154596809	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357674)	promoter-TSS (NM_001357674)	-2.0	NM_009968	12972.0	Mm.374855	NM_009968	ENSMUSG00000028199	Cryz	Sez9	crystallin, zeta	protein-coding	1.06746107224156	1.05589844091941	0.345449100134711	0.337706168314	1.38019338520353	0.357568576511974	0.347646254051105	0.339065365968427	-0.191522577070724	0.921106653569052	1
Merged-chr3-31409029-3	chr3	31408929	31409129	+	907.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-98710.0	NM_172861	241919.0	Mm.285366	NM_172861	ENSMUSG00000069072	Slc7a14	A930013N06|BC061928	solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-8967029-4	chr19	8966920	8967120	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026007)	promoter-TSS (NM_026007)	-21.0	NM_026007	67160.0	Mm.247762	NM_026007	ENSMUSG00000071644	Eef1g	2610301D06Rik|AA407312|EF1G	eukaryotic translation elongation factor 1 gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-105531539-1	chr5	105531439	105531639	+	1000.0	f0_balb.idr	intron (NM_133897, intron 1 of 3)	L1MEf|LINE|L1	12068.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	1.33005962824259	1.21856071031116	1.16589072215718	1.12249093346512	3.33009175062411	2.92944287422344	3.80715504238755	3.2733948746729	5.84811973226729	8.20185617618884e-07	5.5266010192263e-05
Merged-chr5-76322459-1	chr5	76322359	76322559	+	601.0	f0_balb.idr	intron (NM_001310637, intron 2 of 4)	intron (NM_001310637, intron 2 of 4)	8697.0	NM_001310637	79455.0	Mm.143764	NM_023508	ENSMUSG00000029235	Pdcl2	1700010B22Rik|1700016K07Rik|Mgcphlp|Tphlp	phosducin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-58443968-4	chr13	58443879	58444079	+	864.05835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40636.0	NM_001301341	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-8796095-2	chr10	8795995	8796195	+	736.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 4 of 19)	intron (NM_175155, intron 4 of 19)	89975.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28002851-2	chr17	28002751	28002951	+	793.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_181413, intron 11 of 24)	intron (NM_181413, intron 11 of 24)	77733.0	NM_001357681	21463.0	Mm.29758	NM_013687	ENSMUSG00000062859	Tcp11	D17Ken1|Tcp-11	t-complex protein 11	protein-coding	-0.462776874372826	-0.575385053767064	-0.298709773975303	-0.579877085871179	-0.351796039318557	-0.574806588421753	-0.577373311618447	-0.31670483109162	0.324988503287279	0.898048684291079	1
Merged-chr11-103700542-2	chr11	103700442	103700642	+	575.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_102389, intron 1 of 2)	intron (NR_102389, intron 1 of 2)	2818.0	NR_102396	399609.0	Mm.351922	NR_102388		C130046K22Rik	-	RIKEN cDNA C130046K22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90569370-2	chr2	90569291	90569491	+	703.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	11256.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-144301061-6	chr2	144300970	144301170	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME4b|LINE|L1	30166.0	NM_001355688	74528.0	Mm.386817	NM_028984	ENSMUSG00000027424	Mgme1	8430406I07Rik|AI426476	mitochondrial genome maintenance exonuclease 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141207404-2	chr4	141207304	141207504	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CAGA)n|Simple_repeat|Simple_repeat	-6552.0	NM_001081174	76166.0	Mm.271064	NM_001081174	ENSMUSG00000073733	Rsg1	6330545A04Rik|Gm723|b2b2804Clo|b2b2827Clo	REM2 and RAB-like small GTPase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-65609598-2	chr17	65609498	65609698	+	566.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355402, intron 1 of 6)	Lx8|LINE|L1	3957.0	NM_001355402	30960.0	Mm.266767	NM_013933	ENSMUSG00000024091	Vapa	33kDa|VAP33	vesicle-associated membrane protein, associated protein A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-79935761-4	chr7	79935639	79935839	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027420)	promoter-TSS (NM_027420)	-475.0	NM_027420	70420.0	Mm.34266	NM_027420	ENSMUSG00000039043	Arpin	2610034B18Rik	actin-related protein 2/3 complex inhibitor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-164680070-4	chr2	164679952	164680152	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-5055.0	NM_001012704	408190.0	Mm.376205	NM_001012704	ENSMUSG00000067704	Wfdc13	Wfdc13l1	WAP four-disulfide core domain 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-45897810-4	chr13	45897709	45897909	+	978.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199304, intron 2 of 6)	intron (NM_001199304, intron 2 of 6)	67182.0	NM_001199304	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-17696526-3	chr6	17696430	17696630	+	780.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289624, intron 1 of 15)	intron (NM_001289624, intron 1 of 15)	2536.0	NM_001289625	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-123202450-4	chr8	123202345	123202545	+	769.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_007876)	TTS (NM_007876)	10343.0	NM_145606	234852.0	Mm.41596	NM_145606	ENSMUSG00000000743	Chmp1a	2900018H07Rik|Pcoln3	charged multivesicular body protein 1A	protein-coding	2.46346788386352	2.32445418906415	3.28921323229364	2.47413953765904	2.68437542734181	3.18895700297157	2.80250136978008	2.71775014469491	0.300628561838448	0.673328362478232	0.99440487726309
Merged-chr11-49210722-1	chr11	49210622	49210822	+	632.5	f0_balb.idr	intron (NM_001024846, intron 1 of 4)	intron (NM_001024846, intron 1 of 4)	7222.0	NM_009562	22720.0	Mm.16650	NM_009562	ENSMUSG00000046311	Zfp62	-	zinc finger protein 62	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114750300-4	chr11	114750239	114750439	+	818.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001034878, exon 9 of 13)	exon (NM_001034878, exon 9 of 13)	-15050.0	NM_001102615	286942.0	Mm.308713	NM_001102615	ENSMUSG00000010021	Kif19a	Kif19	kinesin family member 19A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27317033-2	chr2	27316933	27317133	+	719.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_133905, intron 3 of 29)	intron (NR_133905, intron 3 of 29)	-69730.0	NM_138665	192166.0	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-87632436-3	chr1	87632383	87632583	+	943.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110192, intron 1 of 26)	B1F|SINE|Alu	12171.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101980653-2	chr11	101980553	101980753	+	738.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_028207, intron 2 of 2)	intron (NM_028207, intron 2 of 2)	4138.0	NM_028207	72349.0	Mm.196295	NM_028207	ENSMUSG00000003518	Dusp3	2210015O03Rik|5031436O03Rik|T-DSP11|VHR	dual specificity phosphatase 3 (vaccinia virus phosphatase VH1-related)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-127443597-2	chr2	127443496	127443696	+	605.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029629, intron 1 of 7)	(CA)n|Simple_repeat|Simple_repeat	969.0	NM_029629	68126.0	Mm.288676	NM_029629	ENSMUSG00000027371	Fahd2a	1500003K14Rik|B430104H02Rik|Cgi-105|Fahd2	fumarylacetoacetate hydrolase domain containing 2A	protein-coding	0.399160943753176	-0.117381971474598	-0.121768288569602	0.0295357939978581	0.410180658796547	-0.116390777817888	-0.120802377612701	0.032261532784698	0.0393565686702823	0.985875003392442	1
Merged-chr6-113644293-4	chr6	113644198	113644398	+	805.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 1 of 11)	MIRb|SINE|MIR	5831.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-45970369-3	chr16	45970280	45970480	+	854.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_152226, exon 3 of 3)	non-coding (NR_152226, exon 3 of 3)	24774.0	NR_152227	100503378.0	Mm.387133	NR_152226	ENSMUSG00000085826	Gm15638	Gm41457	predicted gene 15638	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-31097796-4	chr7	31097686	31097886	+	969.6416630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001276269)	TTS (NM_001276269)	13211.0	NM_001276269	15451.0	Mm.19182	NM_008281	ENSMUSG00000001249	Hpn	Hlb320	hepsin	protein-coding	4.95924728657489	4.30409087787297	3.91679853031608	4.31136423683401	3.42309667697375	3.4555997963615	3.54049054658949	3.4270630617366	-1.35387031739338	0.00392259816456617	0.0551484500375692
Merged-chr18-64618937-4	chr18	64618881	64619081	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001488, intron 1 of 27)	intron (NM_001001488, intron 1 of 27)	42019.0	NM_001001488	54670.0	Mm.270043	NM_001001488	ENSMUSG00000039529	Atp8b1	AI451886|FIC1|Ic	ATPase, class I, type 8B, member 1	protein-coding	2.53228228775338	1.55525470050013	2.00732337638552	2.67360875990885	2.98267474038889	3.41408050329181	3.23051686291946	3.05630183289297	1.72754017185781	0.0206326000486972	0.182828608112459
Merged-chr4-109060745-2	chr4	109060645	109060845	+	682.333313	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001355191)	TTS (NM_001355191)	43090.0	NR_030432	791075.0		NR_030432	ENSMUSG00000076444	Mir761	Mirn761|mir-761|mmu-mir-761	microRNA 761	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-132575841-4	chr7	132575734	132575934	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016978, intron 1 of 9)	intron (NM_016978, intron 1 of 9)	564.0	NM_016978	18242.0	Mm.13694	NM_016978	ENSMUSG00000030934	Oat	AI194874|rhg	ornithine aminotransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-32571660-4	chr4	32571553	32571753	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_026843)	promoter-TSS (NR_026843)	9.0	NR_026843	414068.0	Mm.389550	NR_026843	ENSMUSG00000086150	Bach2os	-	BTB and CNC homology 2, opposite strand	ncRNA	3.52613150371919	4.32064156063812	3.49294821008239	3.84768065118808	3.62278179589121	4.17577605978743	3.84707524185379	3.73236866435804	0.0297965516468372	0.950831490367713	0.998431161219273
Merged-chr10-80568283-2	chr10	80568183	80568383	+	555.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_078477, exon 2 of 2)	3' UTR (NM_078477, exon 2 of 2)	-6723.0	NM_025852	66932.0	Mm.1116	NM_025852	ENSMUSG00000047417	Rexo1	1700021P10Rik|2610511M11Rik|AW050347|EloA-BP1|Rex1|Tceb3bp1	REX1, RNA exonuclease 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97806914-4	chr6	97806797	97806997	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113198)	promoter-TSS (NM_001113198)	-161.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	2.20825833662388	2.17478996584593	3.02967661488378	2.54018176809673	2.22583415269091	2.18990030207446	2.52433475658752	2.55289976304186	-0.345495796457859	0.663111307416932	0.991608990409848
Merged-chr12-35036340-4	chr12	35036230	35036430	+	905.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-10859.0	NM_001014973	217463.0	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	2.41721379584802	3.05260802879665	2.15908054936586	2.09756363886566	2.24307863032954	1.67665686280395	2.90131538241781	1.5829760342356	-0.577745766483681	0.520482050593388	0.947641799425091
Merged-chr13-29006538-2	chr13	29006438	29006638	+	699.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7876.0	NR_045077	77920.0	Mm.197051	NR_045073	ENSMUSG00000086363	A330102I10Rik	-	RIKEN cDNA A330102I10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191098793-1	chr1	191098693	191098893	+	681.0	f0_c57.idr	intron (NM_030060, intron 1 of 2)	intron (NM_030060, intron 1 of 2)	379.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	3.6244806998835	2.70361421613317	4.5740196611363	4.32669952599722	3.6551281331427	3.86071061830473	4.3238140714923	4.6723913646932	0.269580970312531	0.609428046748445	0.974992433107985
Merged-chr6-5174529-4	chr6	5174406	5174606	+	843.1416630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011134, intron 7 of 8)	intron (NM_011134, intron 7 of 8)	19440.0	NM_011134	18979.0	Mm.237657	NM_011134	ENSMUSG00000002588	Pon1	Pon	paraoxonase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-44048870-2	chr14	44048770	44048970	+	626.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42452.0	NM_001011876	630952.0		NM_001011876	ENSMUSG00000072598	Ang6	EG630952	angiogenin, ribonuclease A family, member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-63603496-3	chr9	63603375	63603575	+	787.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311098)	promoter-TSS (NM_001311098)	829.0	NR_151671	66939.0	Mm.34338	NM_025857	ENSMUSG00000037257	Aagab	2310007F21Rik|p34	alpha- and gamma-adaptin binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-95132139-4	chr8	95132050	95132250	+	871.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145831, intron 3 of 21)	intron (NM_001145831, intron 3 of 21)	10390.0	NM_010631	16582.0	Mm.378951	NM_010631	ENSMUSG00000031788	Kifc3	AI325457|BB123200	kinesin family member C3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-58542987-4	chr13	58542878	58543078	+	844.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	67899.0	NM_022317	114304.0	Mm.18188	NM_022317	ENSMUSG00000021553	Slc28a3	Cnt3	solute carrier family 28 (sodium-coupled nucleoside transporter), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-147177861-3	chr2	147177724	147177924	+	651.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001077632, exon 3 of 3)	exon (NM_001077632, exon 3 of 3)	-6259.0	NR_030769	100313531.0	Mm.405189	NR_030769	ENSMUSG00000086509	Nkx2-2os	Gm14112|Nkx2-2as|Nkx2.2AS	NK2 homeobox 2, opposite strand	ncRNA	0.773025722347632	0.637344925639788	0.624907666842727	1.53749635706136	1.27446719550722	1.58710345871023	1.01812810419581	0.616872606776236	0.841265771004069	0.586698637457435	0.967957151188163
Merged-chr12-31657612-2	chr12	31657512	31657712	+	933.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163126, intron 1 of 22)	RMER1B|Other|Other	2743.0	NM_001163126	238123.0	Mm.173068	NM_001163126	ENSMUSG00000035933	Cog5	5430405C01Rik|C87247|D18362|GOLTC1|GTC90	component of oligomeric golgi complex 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-50764681-2	chr16	50764581	50764781	+	813.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13B|LTR|ERVK	-18728.0	NR_131006	78639.0	Mm.160109	NR_131005	ENSMUSG00000092276	1700116B05Rik	-	RIKEN cDNA 1700116B05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52620263-2	chr13	52620163	52620363	+	565.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011518, intron 3 of 13)	intron (NM_011518, intron 3 of 13)	23381.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-108460151-4	chr9	108460049	108460249	+	995.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133744)	promoter-TSS (NM_133744)	-369.0	NM_133744	72454.0	Mm.46488	NM_133744	ENSMUSG00000049305	Ccdc71	2600016J21Rik	coiled-coil domain containing 71	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-120071560-2	chr1	120071460	120071660	+	555.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019432, intron 1 of 1)	intron (NM_019432, intron 1 of 1)	2220.0	NM_019432	170706.0	Mm.24750	NM_019432	ENSMUSG00000050777	Tmem37	AI173373|AW540203|Pr|Pr1	transmembrane protein 37	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-108258092-3	chr3	108257994	108258194	+	903.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011967, intron 1 of 8)	intron (NM_011967, intron 1 of 8)	1168.0	NM_011967	26442.0	Mm.208883	NM_011967	ENSMUSG00000068749	Psma5	ZETA	proteasome (prosome, macropain) subunit, alpha type 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-96866561-3	chr5	96866478	96866678	+	855.805542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	-54694.0	NR_131152	666266.0	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	0.536455186472896	1.68346665308798	0.567261019180555	1.09938875787912	0.539389251370585	1.70029875816239	0.570473001181159	1.10692572632761	0.0365325728460231	0.982202257082755	0.998431161219273
Merged-chr13-107855764-4	chr13	107855649	107855849	+	915.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 2 of 14)	MTC|LTR|ERVL-MaLR	34315.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	-0.534739778638293	-0.977045506599283	-0.988396861378845	-0.990378102851213	-0.993167315700408	-0.974549438888719	-0.985956330414458	-0.689842950430794	-0.6556448457839	0.838325380323706	1
Merged-chr5-34336300-4	chr5	34336199	34336399	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011278)	promoter-TSS (NM_011278)	49.0	NM_011278	19822.0	Mm.21281	NM_011278	ENSMUSG00000029110	Rnf4	AU018689|Gtrgeo8|SNURF	ring finger protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132334959-4	chr4	132334860	132335060	+	946.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133878, intron 6 of 9)	intron (NM_133878, intron 6 of 9)	-5422.0	NM_027925	71787.0	Mm.239183	NM_027925	ENSMUSG00000028898	Trnau1ap	1110007F05Rik|AA387999|Secp43|Trspap1|WI1-2643G14.2	tRNA selenocysteine 1 associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89688911-2	chr3	89688811	89689011	+	665.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26111.0	NM_001038587	56417.0	Mm.316628	NM_019655	ENSMUSG00000027951	Adar	AV242451|Adar1|Adar1p110|Adar1p150|DRADA|mZaADAR	adenosine deaminase, RNA-specific	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-8771447-8	chr12	8771412	8771612	+	745.739563	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_011519, exon 1 of 5)	5' UTR (NM_011519, exon 1 of 5)	116.0	NM_011519	20969.0	Mm.2580	NM_011519	ENSMUSG00000020592	Sdc1	AA408134|AA409076|CD138|Sstn|Synd|Synd1|syn-1	syndecan 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-62854333-4	chr16	62854242	62854442	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011173)	promoter-TSS (NM_011173)	35.0	NM_011173	19128.0	Mm.127156	NM_011173	ENSMUSG00000022912	Pros1	AW214361	protein S (alpha)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-67760701-1	chr14	67760601	67760801	+	563.5	f0_c57.idr	intron (NM_177780, intron 48 of 51)	intron (NM_177780, intron 48 of 51)	15520.0	NR_133010	14714.0	Mm.358309	NM_008145	ENSMUSG00000015812	Gnrh1	Gnrh|Gnrh2|LHRH|Lhrh1|Lnrh|hpg	gonadotropin releasing hormone 1	protein-coding	1.4828925965034	0.881161307200524	0.867396412382906	1.5708497834245	1.39626413801527	1.58068408549467	1.63600613441966	1.05119297651702	0.691660491517349	0.600799424382884	0.972964840983327
Merged-chr9-78110325-4	chr9	78110234	78110434	+	962.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163780, intron 1 of 13)	intron (NM_001163780, intron 1 of 13)	1142.0	NM_001163780	56542.0	Mm.288719	NM_019987	ENSMUSG00000009828	Ick	2210420N10Rik|AI848300|Mrk	intestinal cell kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-24928192-4	chr10	24928129	24928329	+	972.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007482)	promoter-TSS (NM_007482)	-759.0	NM_007482	11846.0	Mm.154144	NM_007482	ENSMUSG00000019987	Arg1	AI|AI256583|Arg-1|PGIF	arginase, liver	protein-coding	3.59673706148343	3.66126018510049	3.61764859176271	3.51806596291483	4.09917065980533	2.14205652838212	3.19813731171647	3.67516506726054	-0.180224771696506	0.763597420969503	0.998431161219273
Merged-chr6-39417287-2	chr6	39417187	39417387	+	935.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_018810, intron 1 of 7)	intron (NM_018810, intron 1 of 7)	2489.0	NM_001311109	54484.0	Mm.270484	NM_018810	ENSMUSG00000029922	Mkrn1	RFP	makorin, ring finger protein, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-125735946-4	chr10	125735842	125736042	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-230277.0	NM_177152	320398.0	Mm.275586	NM_177152	ENSMUSG00000020105	Lrig3	9030421L11Rik|9130004I02Rik|9430095K15Rik|mKIAA3016	leucine-rich repeats and immunoglobulin-like domains 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-70126916-2	chr2	70126779	70126979	+	597.5	f0_balb.idr|f1_c57bl6.idr	exon (NM_177376, exon 8 of 35)	exon (NM_177376, exon 8 of 35)	87753.0	NM_177376	329421.0	Mm.99648	NM_177376	ENSMUSG00000042064	Myo3b	A430065P19Rik	myosin IIIB	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-83572631-3	chr8	83572511	83572711	+	827.694458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_025843)	TTS (NM_025843)	5853.0	NM_025843	66916.0	Mm.29683	NM_025843	ENSMUSG00000033938	Ndufb7	1110002H15Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7	protein-coding	0.806941364172104	0.85245995175265	1.72409701922985	1.84041395008802	1.14050474456945	1.57821069589926	1.05608029645554	1.34036109479285	-0.41887535274519	0.755952004743178	0.998431161219273
Merged-chr19-60790735-4	chr19	60790656	60790856	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010123)	promoter-TSS (NM_010123)	-63.0	NM_010123	13669.0	Mm.2238	NM_010123	ENSMUSG00000024991	Eif3a	A830012B05Rik|Csma|Eif3|Eif3s10|mKIAA0139	eukaryotic translation initiation factor 3, subunit A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-51524981-2	chr10	51524881	51525081	+	767.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34083.0	NM_013532	14728.0	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-103008738-2	chr14	103008638	103008838	+	997.666626	f1_balb.idr|f1_c57bl6.idr	intron (NR_045657, intron 2 of 2)	RMER13B|LTR|ERVK	25065.0	NR_045657	71264.0	Mm.399572	NR_045657	ENSMUSG00000114980	4933432I03Rik	-	RIKEN cDNA 4933432I03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-5862354-8	chr13	5862245	5862445	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011803, intron 1 of 3)	intron (NM_011803, intron 1 of 3)	856.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-118493406-2	chr7	118493306	118493506	+	860.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-1431.0	NM_001033380	319622.0	Mm.323386	NM_001033380	ENSMUSG00000095115	Itpripl2	C130081G24|E030018N11Rik	inositol 1,4,5-triphosphate receptor interacting protein-like 2	protein-coding	1.94338262233309	2.32029292573226	1.78107202814486	1.73372217110994	2.19121678933099	2.76902318688179	2.90937376217512	1.74212445272979	1.23701116161539	0.165673059069584	0.63103027387837
Merged-chr2-30196885-4	chr2	30196829	30197029	+	720.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356475, intron 1 of 13)	intron (NM_001356475, intron 1 of 13)	8918.0	NM_001356475	70266.0	Mm.216089	NM_172404	ENSMUSG00000039648	Kyat1	2010009K05Rik|AI182306|Ccbl1|Gtk|Kat1|KatI	kynurenine aminotransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91017521-2	chr2	91017421	91017621	+	607.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_017368, exon 15 of 15)	3' UTR (NM_017368, exon 15 of 15)	-18106.0	NM_009023	19400.0	Mm.1272	NM_009023	ENSMUSG00000002104	Rapsn	43kDa|Nraps|Raps|rapsyn	receptor-associated protein of the synapse	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-34244895-4	chr10	34244809	34245009	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37281.0	NM_009433	22110.0	Mm.20445	NM_009433	ENSMUSG00000047514	Tspyl1	Tspyl	testis-specific protein, Y-encoded-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-9886886-2	chr19	9886786	9886986	+	602.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016692, intron 4 of 17)	intron (NM_016692, intron 4 of 17)	12647.0	NM_016692	16319.0	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-13312948-2	chr9	13312824	13313024	+	748.0	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	65968.0	NM_025534	66396.0	Mm.290620	NM_025534	ENSMUSG00000079084	Ccdc82	2310043N13Rik	coiled-coil domain containing 82	protein-coding	0.45180539938584	0.399842821394876	0.212003090266369	0.207743169867974	0.563277549728014	0.218791668866188	0.761363196855876	0.615790858393138	1.79152843361924	0.342894056994062	1
Merged-chr1-171020869-2	chr1	171020769	171020969	+	624.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144559, intron 3 of 4)	RLTR12D|LTR|ERVK	1943.0	NM_144559	246256.0	Mm.251254	NM_144559	ENSMUSG00000059089	Fcgr4	4833442P21Rik|CD16-2|FcgRIV|FcgammaRIV|Fcgr3a|Fcrl3	Fc receptor, IgG, low affinity IV	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-12992435-5	chr1	12992388	12992588	+	959.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1353.0	NM_172841	240726.0	Mm.24481	NM_172841	ENSMUSG00000025938	Slco5a1	4732454B15|A630033C23Rik|AA407151	solute carrier organic anion transporter family, member 5A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-65198542-3	chr5	65198440	65198640	+	849.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC|LINE|L1	-1156.0	NM_001359880	213081.0	Mm.127550	NM_153391	ENSMUSG00000037890	Wdr19	C330027H04Rik|D330023L08Rik|DYF2|Ift144|PWDMP|mKIAA1638	WD repeat domain 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30181513-4	chr7	30181407	30181607	+	825.30835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2664.0	NM_009944	12865.0	Mm.423030	NM_009944	ENSMUSG00000074218	Cox7a1	COX7A|COX7AH|COX7AM	cytochrome c oxidase subunit VIIa 1	protein-coding	4.77531121135679	4.33830175167196	3.71180730118641	5.24711509046359	3.85464280296443	3.7842284799478	3.10128874274797	3.34439886716129	-1.4454567003185	0.00311359826351098	0.0465797406054922
Merged-chr2-116418365-2	chr2	116418265	116418465	+	561.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-342269.0	NR_033447	69974.0	Mm.440293	NR_033447		2810405F15Rik	-	RIKEN cDNA 2810405F15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-88458844-3	chr4	88458740	88458940	+	792.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-19914.0	NM_025760	66775.0	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	1.37944616805698	1.07851127767916	1.52878913258265	0.64589553040514	0.807516823198859	1.61174738323474	0.658323341385741	0.647594778119587	-0.76646912516781	0.617859656866508	0.977517868708383
Merged-chr7-25130458-2	chr7	25130358	25130558	+	801.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163556, intron 1 of 13)	intron (NM_001163556, intron 1 of 13)	2002.0	NM_011138	18987.0	Mm.76683	NM_011138	ENSMUSG00000008496	Pou2f2	Oct-2|Oct2a|Oct2b|Oct2c|Oct2d|Otf-2|Otf2	POU domain, class 2, transcription factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135134317-3	chr5	135134224	135134424	+	710.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152882, intron 14 of 16)	ZP3AR|Satellite|Satellite	-15387.0	NM_013763	27368.0	Mm.36746	NM_013763	ENSMUSG00000005374	Tbl2	C76179|WS-bTRP	transducin (beta)-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101259333-4	chr15	101259221	101259421	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	-7525.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140751420-5	chr5	140751364	140751564	+	823.07666	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173405, intron 7 of 7)	B1_Mus2|SINE|Alu	27337.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-165154368-3	chr1	165154301	165154501	+	557.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_032005, intron 1 of 7)	intron (NM_032005, intron 1 of 7)	6372.0	NM_032005	83993.0	Mm.190649	NM_032005	ENSMUSG00000026572	Tbx19	AU019250|D1Ertd754e|Tpit	T-box 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78327095-2	chr15	78326995	78327195	+	557.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358854, intron 2 of 14)	intron (NM_001358854, intron 2 of 14)	1105.0	NM_007780	12983.0	Mm.235324	NM_007780	ENSMUSG00000071713	Csf2rb	AI848964|AIC2B|Bc|CDw131|Csf2rb1|Csfgmrb|Il3r|Il3rb|Il3rb1|Il5rb	colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-92149417-3	chr5	92149300	92149500	+	705.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019490, intron 1 of 23)	intron (NM_019490, intron 1 of 23)	11462.0	NM_019490	56041.0	Mm.15868	NM_019490	ENSMUSG00000029407	Uso1	115kDa|TAP|Vdp	USO1 vesicle docking factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-87721055-2	chr10	87720981	87721181	+	893.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-137184.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	0.912148430609953	0.245416924020416	0.237707510269231	0.231719463977121	0.223194495512138	0.247146976102556	0.968185446589267	0.916241322822084	1.06164966735102	0.604159491469005	1
Merged-chr5-122109983-4	chr5	122109869	122110069	+	906.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183307, intron 11 of 12)	intron (NM_183307, intron 11 of 12)	9018.0	NM_010861	17906.0	Mm.1529	NM_010861	ENSMUSG00000013936	Myl2	MLC-2|MLC-2s/v|MLC-2v|Mlc2v|Mylpc	myosin, light polypeptide 2, regulatory, cardiac, slow	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-45265482-2	chr9	45265382	45265582	+	967.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_136903, intron 3 of 5)	intron (NR_136903, intron 3 of 5)	1225.0	NR_106054	102466803.0		NR_106054	ENSMUSG00000098361	Mir7086	Gm27643|mmu-mir-7086	microRNA 7086	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-43467727-2	chr7	43467627	43467827	+	847.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290316, intron 6 of 9)	intron (NM_001290316, intron 6 of 9)	4494.0	NM_001290316	75690.0	Mm.30200	NM_001290316	ENSMUSG00000070604	Vsig10l	-	V-set and immunoglobulin domain containing 10 like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-144581758-4	chr7	144581771	144581971	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010175, intron 1 of 1)	intron (NM_010175, intron 1 of 1)	565.0	NM_010175	14082.0	Mm.5126	NM_010175	ENSMUSG00000031077	Fadd	Mort1/FADD	Fas (TNFRSF6)-associated via death domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-44532898-4	chr13	44532812	44533012	+	930.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	93185.0	NR_045489	69491.0	Mm.392410	NR_045489	ENSMUSG00000098144	1700029N11Rik	-	RIKEN cDNA 1700029N11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-45342063-4	chr4	45341906	45342106	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153167)	promoter-TSS (NM_153167)	-95.0	NM_153167	242418.0	Mm.317668	NM_153167	ENSMUSG00000035572	Dcaf10	AA959934|Wdr32	DDB1 and CUL4 associated factor 10	protein-coding	5.06463640202868	5.23419026569997	5.30950197877004	4.71959576440086	4.82858358702686	3.97834704204787	5.48781884755757	5.26321271926327	-0.110433707894752	0.7619793624162	0.998431161219273
Merged-chr1-144265828-4	chr1	144265725	144265925	+	750.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16721.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-39231979-2	chr18	39231879	39232079	+	618.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361073, intron 14 of 21)	intron (NM_001361073, intron 14 of 21)	238834.0	NM_175164	71302.0	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-130914846-4	chr4	130914723	130914923	+	934.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010686, intron 1 of 7)	MIR3|SINE|MIR	1489.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-30647888-4	chr5	30647784	30647984	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175675)	promoter-TSS (NM_175675)	-52.0	NR_049199	100885838.0		NR_049199	ENSMUSG00000093710	Mir5625	Gm23930|mmu-mir-5625	microRNA 5625	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-20741047-4	chr18	20740952	20741152	+	969.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019737, intron 1 of 8)	intron (NM_019737, intron 1 of 8)	5352.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-155490562-4	chr4	155490466	155490666	+	985.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001160017)	promoter-TSS (NM_001160017)	-795.0	NM_001160017	14688.0	Mm.2344	NM_008142	ENSMUSG00000029064	Gnb1	AA409223|C77571|Gnb-1	guanine nucleotide binding protein (G protein), beta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-9654477-2	chr9	9654377	9654577	+	765.583374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-239954.0	NR_105745	102466147.0		NR_105745	ENSMUSG00000098408	Mir6237	Gm27411|mmu-mir-6237	microRNA 6237	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-93192921-4	chr16	93192812	93193012	+	920.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	160277.0	NR_040486	69857.0	Mm.81192	NR_040486	ENSMUSG00000100277	1810053B23Rik	1810008L18Rik|1810056K14Rik	RIKEN cDNA 1810053B23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-72595491-3	chr14	72595392	72595592	+	870.694458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207636, intron 4 of 25)	intron (NM_207636, intron 4 of 25)	114511.0	NM_207636	319448.0	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-86396143-2	chr1	86396043	86396243	+	703.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-6782.0	NM_001319227	14767.0	Mm.389159	NM_010341	ENSMUSG00000026237	Nmur1	FM-3|Gpr66|NMU-R1|NMU1R|NmU-R	neuromedin U receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-29384191-2	chr7	29384091	29384291	+	585.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081028, intron 8 of 22)	intron (NM_001081028, intron 8 of 22)	80186.0	NM_013874	29861.0	Mm.101885	NM_013874	ENSMUSG00000030584	Dpf1	Neud4	D4, zinc and double PHD fingers family 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-33906737-1	chr17	33906637	33906837	+	579.0	f1_balb.idr	TTS (NR_040470)	TTS (NR_040470)	1602.0	NR_040470	474160.0	Mm.206186	NR_040470	ENSMUSG00000092349	Platr17	-	pluripotency associated transcript 17	ncRNA	0.718624705443369	1.36152852450223	1.15379418746643	1.39371577392515	1.52523812634739	1.94804384303114	0.754532610043923	0.741228543459978	0.638035805541612	0.659406576829707	0.989483215875849
Merged-chr10-8953160-3	chr10	8953063	8953263	+	972.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-67093.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0.32039375649349	2.06614622228974	0.354894931995839	0.342234686957432	1.13214319005912	0.374313261431913	0.358450498059484	1.09899547505195	-0.957791076950309	0.770107920398575	0.998431161219273
Merged-chr11-73109291-3	chr11	73109190	73109390	+	726.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361245, intron 2 of 30)	intron (NM_001361245, intron 2 of 30)	18695.0	NM_172944	16407.0	Mm.96	NM_008399	ENSMUSG00000005947	Itgae	A530055J10|CD103|aM290|alpha-E1|alpha-M290	integrin alpha E, epithelial-associated	protein-coding	0.683217048547613	0.538994350279862	0.525919202011672	0.515631989979284	1.39190573415103	1.41797815539103	0.528827436060851	1.65532673616306	4.1055312986192	0.0152781703664418	0.147040611889403
Merged-chr12-101957309-2	chr12	101957209	101957409	+	617.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029705, intron 1 of 10)	intron (NM_029705, intron 1 of 10)	934.0	NM_029705	110616.0	Mm.271914	NM_029705	ENSMUSG00000021189	Atxn3	2210008M02Rik|AI463012|AI647473|ATX3|MJD1|Mjd|Sca3|ataxin-3	ataxin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166740418-1	chr2	166740318	166740518	+	542.0	f1_c57bl6.idr	Intergenic	Intergenic	-26586.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10970665-2	chr19	10970565	10970765	+	586.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_023529, intron 1 of 8)	intron (NM_023529, intron 1 of 8)	4005.0	NM_023529	69826.0	Mm.273404	NM_023529	ENSMUSG00000024731	Ms4a10	2010001N17Rik	membrane-spanning 4-domains, subfamily A, member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-14494358-4	chr2	14494225	14494425	+	896.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001012305, intron 12 of 12)	intron (NM_001012305, intron 12 of 12)	105927.0	NM_001012305	277468.0	Mm.44662	NM_001012305	ENSMUSG00000036949	Slc39a12	AW046938|Gm731	solute carrier family 39 (zinc transporter), member 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-14350979-2	chr14	14350900	14351100	+	686.650024	f1_balb.idr|f1_c57bl6.idr	intron (NM_008369, intron 8 of 11)	intron (NM_008369, intron 8 of 11)	4505.0	NM_008369	16188.0	Mm.425857	NM_008369	ENSMUSG00000068758	Il3ra	CD123|CDw123|SUT-1	interleukin 3 receptor, alpha chain	protein-coding	0.156573391658975	-0.184101370113962	-0.188290400240844	-0.191510344691445	0.258430750204968	-0.183154667843862	-0.1873679921311	0.319366639440932	1.5323917432441	0.527581124792015	1
Merged-chr11-58007761-1	chr11	58007661	58007861	+	540.0	f1_balb.idr	Intergenic	B4A|SINE|B4	-1303.0	NM_028451	73158.0	Mm.248843	NM_028451	ENSMUSG00000037331	Larp1	1810024J12Rik|3110040D16Rik|Larp|mKIAA0731	La ribonucleoprotein domain family, member 1	protein-coding	0.697705020680008	1.56795027474663	0.739977953971136	1.44984444815106	0.701772662727069	0.763766015026377	2.12881295062663	1.97098860088724	1.21336308675012	0.416925392536786	0.897222495742637
Merged-chr1-127208339-1	chr1	127208239	127208439	+	544.0	f1_c57bl6.idr	intron (NM_145128, intron 1 of 17)	intron (NM_145128, intron 1 of 17)	3353.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-34047130-4	chr11	34047037	34047237	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010696, exon 1 of 21)	5' UTR (NM_010696, exon 1 of 21)	209.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-104339188-3	chr9	104339075	104339275	+	823.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-1453.0	NM_207668	56318.0	Mm.19941	NM_019807	ENSMUSG00000032561	Acpp	5'-NT|A030005E02Rik|FRAP|Lap|PAP|Ppal	acid phosphatase, prostate	protein-coding	0.570547449953511	0.413055539361374	0.398733850519851	0.614446311980788	1.69511081645226	0.416228740412469	0.40192788263559	1.75170015498347	3.42347112672365	0.0520367672761977	0.333870125015947
Merged-chr11-58030111-3	chr11	58030002	58030202	+	638.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028451, intron 1 of 18)	PB1D9|SINE|Alu	21038.0	NM_028451	73158.0	Mm.248843	NM_028451	ENSMUSG00000037331	Larp1	1810024J12Rik|3110040D16Rik|Larp|mKIAA0731	La ribonucleoprotein domain family, member 1	protein-coding	3.8185598712122	4.62706475811491	3.53283061389306	4.1299121622902	3.84953632354413	4.40791970682031	4.27251605836019	3.24632501389709	-0.103818825009001	0.831675887101383	0.998431161219273
Merged-chr9-61238448-2	chr9	61238348	61238548	+	676.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55361.0	NR_045334	622037.0	Mm.126243	NR_045334	ENSMUSG00000111658	B930092H01Rik	-	RIKEN cDNA B930092H01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-71437219-5	chr6	71437119	71437319	+	745.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355745, intron 1 of 9)	intron (NM_001355745, intron 1 of 9)	3418.0	NM_001355745	68477.0	Mm.28474	NM_024288	ENSMUSG00000002222	Rmnd5a	1110007A06Rik|AJ237586|AW125795|Gid2|MTA.D02.090	required for meiotic nuclear division 5 homolog A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-144587289-1	chr3	144587189	144587389	+	690.0	f0_balb.idr	intron (NM_053102, intron 2 of 4)	L1MB3|LINE|L1	16862.0	NM_053102	93684.0	Mm.29812	NM_053102	ENSMUSG00000037072	Selenof	9430015P09Rik|Sep15	selenoprotein F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-97164454-4	chr7	97164359	97164559	+	982.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162477, intron 1 of 9)	intron (NM_001162477, intron 1 of 9)	82708.0	NM_010248	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-99140327-4	chr9	99140224	99140424	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029094)	promoter-TSS (NM_029094)	-113.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-120607076-2	chr1	120606976	120607176	+	862.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_010133, exon 2 of 2)	exon (NM_010133, exon 2 of 2)	4589.0	NM_010133	13798.0	Mm.2657	NM_010133	ENSMUSG00000058665	En1	En-1|Mo-en.1|engrailed-1	engrailed 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-80978477-1	chr17	80978377	80978577	+	545.0	f1_c57bl6.idr	intron (NM_026516, intron 1 of 3)	intron (NM_026516, intron 1 of 3)	33845.0	NM_026516	68027.0	Mm.357108	NM_026516	ENSMUSG00000024245	Tmem178	2810417M05Rik|Tmem178a	transmembrane protein 178	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111945228-2	chr12	111945128	111945328	+	578.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029464)	promoter-TSS (NR_029464)	-746.0	NR_029464	77675.0	Mm.98331	NR_029464	ENSMUSG00000113769	5033406O09Rik	9130204G15Rik	RIKEN cDNA 5033406O09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56215398-2	chr17	56215298	56215498	+	908.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360284, intron 2 of 20)	intron (NM_001360284, intron 2 of 20)	3087.0	NM_001360284	224897.0	Mm.205535	NM_172624	ENSMUSG00000001229	Dpp9	6430584G11Rik|A330078I11|DPP IX|DPRP2	dipeptidylpeptidase 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120718746-2	chr8	120718646	120718846	+	885.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-17612.0	NM_008320	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-21406120-1	chr19	21406020	21406220	+	1000.0	f0_balb.idr	intron (NM_010266, intron 10 of 13)	intron (NM_010266, intron 10 of 13)	66541.0	NM_010266	14544.0	Mm.45054	NM_010266	ENSMUSG00000058624	Gda	AU015411|AW047581|GAH	guanine deaminase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-85977876-4	chr1	85977775	85977975	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16820.0	NM_001033290	227326.0	Mm.244158	NM_001033290	ENSMUSG00000049608	Gpr55	CTFL|Gm218|Lpir1	G protein-coupled receptor 55	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-24205880-4	chr18	24205777	24205977	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001160404)	promoter-TSS (NM_001160404)	-82.0	NM_001361200	14423.0	Mm.30249	NM_013814	ENSMUSG00000000420	Galnt1	-	polypeptide N-acetylgalactosaminyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-17358294-1	chr19	17358194	17358394	+	676.0	f1_balb.idr	intron (NM_010265, intron 1 of 2)	ID4|SINE|ID	-1627.0	NM_173442	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	1.39644835170902	1.57940079417915	1.25254715203182	1.06153347628951	1.59821059841858	0.900692375796051	1.74802957204138	1.06565133941488	0.194110443358806	0.87801586455001	0.998431161219273
Merged-chr5-66052242-2	chr5	66052142	66052342	+	818.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_139065, intron 2 of 6)	ORR1F|LTR|ERVL-MaLR	45937.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131688679-4	chr1	131688570	131688770	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311096)	promoter-TSS (NM_001311096)	-25.0	NM_001311096	226421.0	Mm.44508	NM_145509	ENSMUSG00000052688	Rab7b	5430435G22Rik	RAB7B, member RAS oncogene family	protein-coding	2.65390583721454	2.12160332950737	3.05673000904115	2.17410666445445	2.57940018403218	2.99562185814391	3.23737416106136	2.98775313473922	0.774053356125324	0.28274735981048	0.785520875966225
Merged-chr15-79109334-7	chr15	79109212	79109412	+	956.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177461, exon 1 of 16)	exon (NM_177461, exon 1 of 16)	329.0	NM_177461	27008.0	Mm.196480	NM_177461	ENSMUSG00000033039	Micall1	AI448246|D15Mit260|D15N2e|EST573322|EST820961|MIRab13|mKIAA1668	microtubule associated monooxygenase, calponin and LIM domain containing -like 1	protein-coding	3.04636456954643	1.69572984697349	3.3836751329759	3.56088916615689	3.14853417715008	2.78108351488826	3.80345659294915	2.95362949711113	0.22618994296627	0.749800185351347	0.998431161219273
Merged-chr11-76497898-4	chr11	76497815	76498015	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198018, intron 1 of 21)	intron (NM_198018, intron 1 of 21)	-3420.0	NM_001346670	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-93027805-3	chr16	93027760	93027960	+	807.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-201786.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-40785906-3	chr9	40785733	40785933	+	868.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15440.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	0.56880518963008	1.1966522011872	1.27701558407358	1.10376163365686	0.571440176805128	1.77677966444248	0.820652483882621	0.58811318307373	0.0100433349317922	0.9948659458012	0.998431161219273
Merged-chr13-111410834-2	chr13	111410734	111410934	+	681.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	79293.0	NM_028487	73274.0	Mm.57286	NM_028487	ENSMUSG00000032745	Gpbp1	1700034P14Rik|AU019836|D230035M11Rik|Gpbp|mGPBP	GC-rich promoter binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133887832-8	chr4	133887700	133887900	+	995.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285505)	promoter-TSS (NM_001285505)	-3.0	NM_009097	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	1.43375055173001	2.30140915167664	0.790965110231912	2.34389744843957	1.3120990124129	1.09660981322136	0.795984247657341	0.776215616787224	-2.84699976743401	0.037380319988537	0.27492178947025
Merged-chr14-70054349-4	chr14	70054258	70054458	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028560, intron 6 of 6)	intron (NM_028560, intron 6 of 6)	-23087.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115897270-4	chr5	115897193	115897393	+	945.69165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007708, intron 8 of 46)	intron (NM_007708, intron 8 of 46)	51637.0	NM_007708	12704.0	Mm.8321	NM_007708	ENSMUSG00000029516	Cit	C030025P15Rik|CRIK|CRIK-SK|Cit-k	citron	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-22157598-3	chr10	22157503	22157703	+	638.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359809)	promoter-TSS (NM_001359809)	-966.0	NM_001359809	379043.0	Mm.439724	NM_198193	ENSMUSG00000053219	Raet1e	-	retinoic acid early transcript 1E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-173772528-2	chr2	173772428	173772628	+	721.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_019806, intron 3 of 5)	intron (NM_019806, intron 3 of 5)	34957.0	NM_019806	56491.0	Mm.260456	NM_019806	ENSMUSG00000054455	Vapb	AI225786|AI840687|AI848259|D2Abb2e|R75548|VAP33b|Vamp33b	vesicle-associated membrane protein, associated protein B and C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-11398756-2	chr15	11398656	11398856	+	700.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_033074, intron 1 of 18)	intron (NM_033074, intron 1 of 18)	902.0	NM_033074	110960.0	Mm.286061	NM_033074	ENSMUSG00000022241	Tars	D15Wsu59e|ThrRS	threonyl-tRNA synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91942711-1	chr2	91942611	91942811	+	1000.0	f1_balb.idr	intron (NM_001166597, intron 5 of 31)	intron (NM_001166597, intron 5 of 31)	2219.0	NR_105965	102465604.0		NR_105965	ENSMUSG00000098651	Mir6999	Gm27673|mmu-mir-6999	microRNA 6999	ncRNA	-0.180603787604048	-0.162224810362136	-0.168202995761939	-0.172843512671688	0.683418341766447	-0.160882778212808	0.571235119892633	-0.172031014493351	4.0464680385332	0.090821164009486	1
Merged-chr17-65838911-1	chr17	65838811	65839011	+	760.0	f1_balb.idr	non-coding (NR_104465, exon 18 of 19)	non-coding (NR_104465, exon 18 of 19)	46012.0	NM_001198949	19765.0	Mm.17009	NM_009067	ENSMUSG00000024096	Ralbp1	RLIP76|Rip1	ralA binding protein 1	protein-coding	0.437621174838892	0.466169847475469	0.456913127438385	1.31245796201578	0.861122649245105	0.468244442045566	1.08584289163761	1.03823042006385	0.674494374296408	0.70296057668801	1
Merged-chr10-117983508-3	chr10	117983410	117983610	+	898.638916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	58051.0	NR_045342	71067.0	Mm.410793	NR_045342	ENSMUSG00000112500	4933411E08Rik	-	RIKEN cDNA 4933411E08 gene	ncRNA	0.0978489620670359	0.45615685583947	0.657443440839046	0.61902972160227	0.360891468701479	0.115483528210137	0.110062732688348	0.105448219533986	-2.45303221638344	0.241579199313509	1
Merged-chr7-120984655-4	chr7	120984551	120984751	+	923.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028955, intron 1 of 7)	intron (NM_028955, intron 1 of 7)	2142.0	NM_028955	74466.0	Mm.189707	NM_028955	ENSMUSG00000030877	Mfsd13b	4933427G17Rik	major facilitator superfamily domain containing 13B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-52945469-3	chr2	52945373	52945573	+	712.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	87605.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-73671719-4	chr12	73671602	73671802	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008856, intron 2 of 13)	AmnSINE1|SINE|Deu	86906.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-107137563-2	chr10	107137463	107137663	+	633.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-13899.0	NM_198636	380660.0	Mm.336072	NM_198636	ENSMUSG00000035948	Acss3	8430416H19Rik|Gm874	acyl-CoA synthetase short-chain family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-71142730-2	chr6	71142630	71142830	+	779.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_178413, intron 1 of 9)	ID4_|SINE|ID	1650.0	NM_001033929	232078.0	Mm.37547	NM_178413	ENSMUSG00000054474	Thnsl2	BC051244|TSH2	threonine synthase-like 2 (bacterial)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152770990-3	chr1	152770900	152771100	+	691.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026369, intron 2 of 3)	intron (NM_026369, intron 2 of 3)	4458.0	NM_026369	67771.0	Mm.288974	NM_026369	ENSMUSG00000008475	Arpc5	5830443F10Rik|p16-Arc	actin related protein 2/3 complex, subunit 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-120083493-3	chr1	120083411	120083611	+	577.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9731.0	NM_019432	170706.0	Mm.24750	NM_019432	ENSMUSG00000050777	Tmem37	AI173373|AW540203|Pr|Pr1	transmembrane protein 37	protein-coding	0.485637203463793	1.12401221138337	0.345369907407194	0.51859509975197	0.490588796225482	0.355617488571271	1.17543721224462	0.522021021883047	0.131644720666489	0.937323576086109	1
Merged-chr2-93988688-1	chr2	93988588	93988788	+	665.0	f0_balb.idr	intron (NM_026944, intron 8 of 9)	intron (NM_026944, intron 8 of 9)	8654.0	NR_045827	70852.0	Mm.437014	NR_045827	ENSMUSG00000027196	Alkbh3os1	4921507L20Rik	alkB homolog 3, opposite strand 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-11485893-4	chr4	11485809	11486009	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347055)	promoter-TSS (NM_001347055)	-49.0	NM_001081183	66185.0	Mm.331487	NM_001081183	ENSMUSG00000040720	Virma	1110037F02Rik|4930422M05Rik|Kiaa1429|mKIAA1429	vir like m6A methyltransferase associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-34642494-3	chr2	34642346	34642546	+	728.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	112786.0	NM_001356441	66691.0	Mm.156452	NM_025709	ENSMUSG00000026867	Gapvd1	2010005B09Rik|4432404J10Rik|AW108497|Gapex-5|RAP6|RME-6|mKIAA1521	GTPase activating protein and VPS9 domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-83724923-3	chr2	83724834	83725034	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008402, intron 1 of 29)	CpG	537.0	NM_008402	16410.0	Mm.227	NM_008402	ENSMUSG00000027087	Itgav	1110004F14Rik|2610028E01Rik|CD51|D430040G12Rik	integrin alpha V	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-77257236-2	chr10	77257136	77257336	+	825.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_026944)	TTS (NR_026944)	1987.0	NR_026944	100169878.0	Mm.420901	NR_026944	ENSMUSG00000078444	Gm10941	-	predicted gene 10941	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83415721-4	chr6	83415610	83415810	+	765.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347313, intron 3 of 11)	intron (NM_001347313, intron 3 of 11)	-14608.0	NR_105793	102465194.0		NR_105793	ENSMUSG00000099045	Mir6374	Gm27292|mmu-mir-6374	microRNA 6374	ncRNA	0.369437643674205	1.57455004126821	0.394615461284239	0.385284629128625	0.37182458913647	1.28545676122014	0.623282826773408	0.919804345210984	0.101332611352222	0.954172213554932	0.998431161219273
Merged-chr14-54748479-3	chr14	54748376	54748576	+	834.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016972, intron 3 of 10)	intron (NM_016972, intron 3 of 10)	33410.0	NM_016972	50934.0	Mm.276831	NM_016972	ENSMUSG00000022180	Slc7a8	AA408822|LAT2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	protein-coding	2.97721198771692	4.11192798101206	3.51504504387771	3.24402442384334	1.8126233157562	4.08236928297167	4.06588628946408	3.06229446818043	0.00213637171941819	0.997479662721408	0.999268611847349
Merged-chr9-99064416-2	chr9	99064316	99064516	+	797.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_029094, intron 12 of 23)	intron (NM_029094, intron 12 of 23)	-28726.0	NM_001080776	382097.0	Mm.293727	NM_001080776	ENSMUSG00000044860	Gm1123	AV052824|CLSP	predicted gene 1123	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25805730-4	chr7	25805625	25805825	+	895.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028775, intron 7 of 8)	intron (NM_028775, intron 7 of 8)	10805.0	NM_028775	74134.0	Mm.275188	NM_028775	ENSMUSG00000040703	Cyp2s1	1200011C15Rik|AU041727|C79779	cytochrome P450, family 2, subfamily s, polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114909667-2	chr11	114909567	114909767	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	19626.0	NM_170758	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118462473-2	chr11	118462373	118462573	+	656.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7478.0	NR_045902	100126224.0	Mm.441989	NR_045902	ENSMUSG00000086514	Gm11747	-	predicted gene 11747	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-91758848-3	chr1	91758741	91758941	+	807.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42620.0	NM_007855	13345.0	Mm.9474	NM_007855	ENSMUSG00000007805	Twist2	Dermo1|bHLHa39	twist basic helix-loop-helix transcription factor 2	protein-coding	2.1504022194018	1.36286062424145	1.78507646267645	1.3019087715363	1.86239319344391	1.56022429601365	1.66650172518999	1.74465155149899	0.00419921657513186	0.996868944190312	0.999268611847349
Merged-chr2-156787863-2	chr2	156787763	156787963	+	595.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12399.0	NM_172118	98932.0	Mm.271770	NM_172118	ENSMUSG00000067818	Myl9	AI327049|MLC20|Mylc2c|RLC-C	myosin, light polypeptide 9, regulatory	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-75776306-2	chr2	75776206	75776406	+	815.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55871.0	NM_172666	228061.0	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-12375728-4	chr15	12375603	12375803	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081064, exon 19 of 24)	exon (NM_001081064, exon 19 of 24)	54207.0	NM_025673	66629.0	Mm.157655	NM_025673	ENSMUSG00000022200	Golph3	4733401N08Rik|5730410D03Rik|AW413496	golgi phosphoprotein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-54867546-3	chr6	54867436	54867636	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199143, intron 2 of 4)	intron (NM_199143, intron 2 of 4)	50620.0	NM_199143	387524.0	Mm.286149	NM_199143	ENSMUSG00000058446	Znrf2	1190002C14Rik|AU044205|D6Ertd365e	zinc and ring finger 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166586171-2	chr2	166586071	166586271	+	764.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 23 of 39)	intron (NM_177782, intron 23 of 39)	21649.0	NR_152154	433503.0	Mm.491336	NR_152154		Gm29679	-	predicted gene, 29679	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-80079789-4	chr2	80079666	80079866	+	952.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355141, intron 2 of 15)	intron (NM_001355141, intron 2 of 15)	-40864.0	NM_001355142	18573.0	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-134065476-4	chr1	134065371	134065571	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13684.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-60599069-1	chr1	60598969	60599169	+	770.0	f0_balb.idr	Intergenic	Intergenic	-32304.0	NM_001045513	77300.0	Mm.440325	NM_001045513	ENSMUSG00000026014	Raph1	9430025M21Rik|C730009O10Rik|Lpd	Ras association (RalGDS/AF-6) and pleckstrin homology domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-57590227-2	chr8	57590082	57590282	+	591.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001167981, intron 1 of 11)	intron (NM_001167981, intron 1 of 11)	-61571.0	NR_040698	100502619.0	Mm.393851	NR_040698		AW046200	-	expressed sequence AW046200	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-13746543-1	chr17	13746443	13746643	+	847.0	f0_balb.idr	intron (NM_022311, intron 1 of 2)	intron (NM_022311, intron 1 of 2)	-13998.0	NR_151731	17356.0	Mm.59167	NM_010806	ENSMUSG00000068036	Afdn	5033403D15Rik|AF6|Af-6|Afadin|Gm314|I-afadin|Mllt4|S-afadin	afadin, adherens junction formation factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-72978624-4	chr2	72978520	72978720	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045269)	promoter-TSS (NR_045269)	661.0	NM_001098425	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70003579-2	chr11	70003479	70003679	+	683.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007888, intron 1 of 14)	intron (NM_007888, intron 1 of 14)	2953.0	NM_007888	13543.0	Mm.5114	NM_007888	ENSMUSG00000020888	Dvl2	-	dishevelled segment polarity protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25675682-2	chr7	25675582	25675782	+	638.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290497)	promoter-TSS (NM_001290497)	-516.0	NM_001290498	320208.0	Mm.207484	NM_177102	ENSMUSG00000061702	Tmem91	A830041P22Rik|DSPC3|SynDIG3	transmembrane protein 91	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-112808879-4	chr12	112808749	112808949	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145450)	promoter-TSS (NM_145450)	-126.0	NM_145450	217887.0	Mm.186678	NM_145450	ENSMUSG00000037594	BC022687	AW050009|C130001I08Rik|Clba1|Flj20080	cDNA sequence BC022687	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-37868329-4	chr16	37868234	37868434	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177093)	promoter-TSS (NM_177093)	-66.0	NM_177093	320184.0	Mm.390882	NM_177093	ENSMUSG00000034158	Lrrc58	1810012N18Rik|C330018J07Rik	leucine rich repeat containing 58	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-37451475-2	chr2	37451375	37451575	+	575.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033960)	promoter-TSS (NM_001033960)	-779.0	NM_001033960	227800.0	Mm.383192	NM_146121	ENSMUSG00000035437	Rabgap1	Gapcena|mKIAA4104	RAB GTPase activating protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167775421-4	chr2	167775330	167775530	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	84253.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-40317892-2	chr9	40317792	40317992	+	831.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_151734, intron 3 of 18)	intron (NR_151734, intron 3 of 18)	3431.0	NM_001357622	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-31759906-4	chr2	31759805	31760005	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001283045)	promoter-TSS (NM_001283045)	-34.0	NM_009594	11350.0	Mm.1318	NM_009594	ENSMUSG00000026842	Abl1	AI325092|Abl|E430008G22Rik|c-Abl	c-abl oncogene 1, non-receptor tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-145746558-7	chr6	145746445	145746645	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	C-rich|Low_complexity|Low_complexity	-61838.0	NM_027760	71323.0	Mm.158669	NM_027760	ENSMUSG00000030259	Rassf8	5133400D11Rik|AA815821|AW123240|Hoj1|mHoj-1	Ras association (RalGDS/AF-6) domain family (N-terminal) member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-36250234-2	chr8	36250105	36250305	+	672.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081150)	promoter-TSS (NM_001081150)	-689.0	NM_001081150	244421.0	Mm.324032	NM_001081150	ENSMUSG00000039633	Lonrf1	-	LON peptidase N-terminal domain and ring finger 1	protein-coding	1.5601246747576	1.72856246348066	2.22030727602047	2.57733260409321	2.1570571274926	1.53260623945261	1.68754324983677	2.26739681393886	-0.359429906256492	0.713124235678048	0.998431161219273
Merged-chr5-88887397-2	chr5	88887297	88887497	+	715.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359211, intron 1 of 26)	CpG	137.0	NM_018760	54403.0	Mm.41044	NM_018760	ENSMUSG00000060961	Slc4a4	AI835705|NBC|NBC1	solute carrier family 4 (anion exchanger), member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-116943372-6	chr2	116943247	116943447	+	864.4722289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	43195.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-118320883-1	chr1	118320783	118320983	+	600.0	f0_c57.idr	promoter-TSS (NM_026472)	promoter-TSS (NM_026472)	-960.0	NM_026472	67949.0	Mm.280311	NM_026472	ENSMUSG00000026377	Nifk	AI852665|C130020J04Rik|Mki67ip	nucleolar protein interacting with the FHA domain of MKI67	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-136555785-4	chr6	136555696	136555896	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019426, intron 1 of 14)	intron (NM_019426, intron 1 of 14)	36945.0	NM_019426	54343.0	Mm.173271	NM_019426	ENSMUSG00000030213	Atf7ip	2610204M12Rik|AM|Mcaf1	activating transcription factor 7 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-173763276-2	chr1	173763181	173763381	+	705.599976	f0_c57.idr|f1_balb.idr	intron (NM_008329, intron 1 of 8)	Lx8|LINE|L1	3638.0	NM_008329	15951.0	Mm.261270	NM_008329	ENSMUSG00000073489	Ifi204	Ifi16|p204	interferon activated gene 204	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-134767113-2	chr4	134767013	134767213	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145554, intron 1 of 8)	intron (NM_145554, intron 1 of 8)	891.0	NM_145554	100017.0	Mm.27486	NM_145554	ENSMUSG00000037295	Ldlrap1	AA691260|ARH2|Arh|Arh1|FHCB1|FHCB2	low density lipoprotein receptor adaptor protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64751395-3	chr5	64751282	64751482	+	761.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52141.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34304916-4	chr17	34304825	34305025	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010382)	promoter-TSS (NM_010382)	-942.0	NM_010382	14969.0	Mm.22564	NM_010382	ENSMUSG00000060586	H2-Eb1	Eb|H-2Eb|H2Eb|Ia-4|Ia4	histocompatibility 2, class II antigen E beta	protein-coding	6.09591512992272	6.22309378878432	5.92689185518162	6.15727246370163	6.46306229490466	7.05892382878348	6.4804184284763	6.07594966468005	0.491009378957774	0.0371487373004321	0.274350236551083
Merged-chr6-95112240-2	chr6	95112121	95112321	+	700.674988	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5410.0	NR_153843	102634268.0	Mm.396160	NR_153843		Kbtbd8os	1700010K10Rik	kelch repeat and BTB (POZ) domain containing 8, opposite strand	ncRNA	1.61114161029583	1.02085403638713	2.58214505372522	1.83054219162625	1.62571884403238	2.1006565652922	1.00245428589895	1.2172542041071	-0.920853589107892	0.441061621866473	0.910192180797031
Merged-chr19-5367641-2	chr19	5367577	5367777	+	633.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_104482)	promoter-TSS (NR_104482)	-801.0	NM_011793	23825.0	Mm.358649	NM_011793	ENSMUSG00000024844	Banf1	Baf|Bcrp1|L2bp1/Baf	barrier to autointegration factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-31130935-3	chr2	31130858	31131058	+	845.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355105, intron 1 of 15)	intron (NM_001355105, intron 1 of 15)	11050.0	NM_001355106	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-60599247-2	chr3	60599147	60599347	+	569.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253711, intron 2 of 7)	intron (NM_001253711, intron 2 of 7)	98068.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-79768388-3	chr1	79768290	79768490	+	784.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6621.0	NM_027057	69368.0	Mm.293273	NM_027057	ENSMUSG00000073643	Wdfy1	1700013B03Rik|1700120F24Rik|FENS-1|Jr1|WDF1|ZFYVE17|mKIAA1435	WD repeat and FYVE domain containing 1	protein-coding	0.00513052291166184	-0.117855923516375	-0.122414612467519	0.479740564645306	-0.130867527362262	0.230269671518762	0.19801012510167	-0.125310548238334	-0.309844660369201	0.888609732099812	1
Merged-chr17-35229262-1	chr17	35229162	35229362	+	571.0	f1_balb.idr	intron (NM_010909, intron 2 of 3)	(CA)n|Simple_repeat|Simple_repeat	-5748.0	NM_001347351	66237.0	Mm.396107	NM_023179	ENSMUSG00000024403	Atp6v1g2	1500002D01Rik|Atp6g2|NG38|VAG2	ATPase, H+ transporting, lysosomal V1 subunit G2	protein-coding	0.541346756676282	0.152835340619769	0.14547862618188	0.13976343508896	1.12346803029686	0.154486008992362	0.147106049923002	0.72548057860459	2.26569330756316	0.28195236567709	1
Merged-chr2-156310383-1	chr2	156310283	156310483	+	554.0	f1_balb.idr	TTS (NM_172674)	TTS (NM_172674)	-2090.0	NM_027585	70873.0	Mm.475234	NM_027585	ENSMUSG00000038085	Cnbd2	4921517L17Rik|5430421B09Rik|Cris	cyclic nucleotide binding domain containing 2	protein-coding	0.597589525502601	1.41557986806296	0.620018088529655	1.30510465238332	0.599696736890875	1.02906139449139	1.13247926669166	1.09028238018923	-0.313586449816574	0.842005616569152	0.998431161219273
Merged-chr16-30510875-5	chr16	30510927	30511127	+	999.159973	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_172614)	TTS (NM_172614)	39551.0	NM_172614	224090.0	Mm.241459	NM_172614	ENSMUSG00000022537	Tmem44	1700007N03Rik|9330161C17Rik|B230220N21	transmembrane protein 44	protein-coding	1.84675662141891	1.05035000858527	1.63339586152859	1.42559077305849	2.45112945830933	1.05546444477345	2.32069966996205	1.4328281502501	1.21649347879384	0.299419653562963	0.800780758458171
Merged-chr7-27447842-4	chr7	27447746	27447946	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144923)	promoter-TSS (NM_144923)	-132.0	NM_144923	233016.0	Mm.24021	NM_144923	ENSMUSG00000040466	Blvrb	-	biliverdin reductase B (flavin reductase (NADPH))	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-151536065-4	chr2	151535986	151536186	+	848.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6397.0	NR_126058	14225.0	Mm.278458	NM_008019	ENSMUSG00000032966	Fkbp1a	FKBP12|Fkbp|Fkbp1	FK506 binding protein 1a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115060255-4	chr5	115060162	115060362	+	880.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029012, intron 1 of 10)	Lx5c|LINE|L1	47700.0	NM_001271591	100502825.0	Mm.361657	NM_001271590		Rpl37rt	EyeLinc4|Gm13826	ribosomal protein L37, retrotransposed	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-14209620-4	chr10	14209512	14209712	+	719.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	243233.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-63063198-1	chr16	63063098	63063298	+	681.0	f1_c57bl6.idr	Intergenic	RMER13A2|LTR|ERVK	208891.0	NM_011173	19128.0	Mm.127156	NM_011173	ENSMUSG00000022912	Pros1	AW214361	protein S (alpha)	protein-coding	0.573822916076927	0.105889858733348	0.101839628936331	0.557630857098852	0.583473487185021	0.106809294244027	0.102728916114521	0.0992850567825407	-0.895543777420101	0.68795080135554	1
Merged-chr2-95674538-1	chr2	95674438	95674638	+	566.0	f1_c57bl6.idr	Intergenic	RLTR20A3_MM|LTR|ERVK	-643631.0	NM_001289742	241568.0	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	0.140661215245202	0.738533769437099	1.29005183997766	0.152324486959878	0.142410933180725	0.170073124652027	0.161205436193631	0.658530887116346	-2.13833891968503	0.296738805616275	1
Merged-chr14-30699898-3	chr14	30699815	30700015	+	763.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14934.0	NM_019460	54650.0	Mm.294662	NM_019460	ENSMUSG00000006527	Sfmbt1	4930442N21Rik|9330180L21Rik|AA536974|Sfmbt|Smr	Scm-like with four mbt domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115703645-2	chr11	115703545	115703745	+	736.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008163, intron 1 of 5)	ORR1A4|LTR|ERVL-MaLR	-3717.0	NM_001313936	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-11232106-2	chr9	11232006	11232206	+	576.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2B|LINE|L1	-327331.0	NM_001170787	244682.0	Mm.187021	NM_001033359	ENSMUSG00000039488	Cntn5	6720426O10Rik|A830025P08Rik|Gm507|NB-2	contactin 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99153587-2	chr7	99153487	99153687	+	635.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_026384)	TTS (NM_026384)	-12443.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-21276863-2	chr17	21276763	21276963	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17A2|LTR|ERVK	-9670.0	NM_134201	171235.0	Mm.432089	NM_134201	ENSMUSG00000054142	Vmn1r236	V1rf4	vomeronasal 1 receptor 236	protein-coding	-1.06997269762433	-1.30473905204845	-1.3145270772132	-1.32256725251374	-1.06385251204029	-1.30261794616352	-1.3123112828633	-1.32112806497905	0.0394047164033882	0.991001358494878	1
Merged-chr19-19144691-3	chr19	19144595	19144795	+	726.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-33499.0	NM_001043354	225998.0	Mm.234641	NM_146095	ENSMUSG00000036192	Rorb	Nr1f2|RZR-beta|RZRB|Rorbeta|hstp	RAR-related orphan receptor beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-77782672-3	chr15	77782543	77782743	+	693.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022410, intron 15 of 40)	intron (NM_022410, intron 15 of 40)	-25633.0	NM_001357895	239552.0	Mm.125650	NM_001081970	ENSMUSG00000056656	Apol8	9830006J20Rik|APOL-II|Apol2	apolipoprotein L 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133873089-4	chr4	133872977	133873177	+	982.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009097, intron 2 of 21)	intron (NM_009097, intron 2 of 21)	1654.0	NM_001285506	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-32542957-4	chr11	32542856	32543056	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 1 of 18)	intron (NM_009288, intron 1 of 18)	9690.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-171633556-3	chr2	171633457	171633657	+	946.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	329242.0	NR_040509	75655.0	Mm.396203	NR_040509	ENSMUSG00000086823	1700028P15Rik	-	RIKEN cDNA 1700028P15 gene	ncRNA	-0.394665993249109	-0.641743896724409	-0.0932617647492931	-0.647428052650767	-0.650906979733576	-0.641017884530699	-0.469252779806126	-0.646996940692412	-2.24074528525992	0.405783945553853	1
Merged-chr4-107682087-2	chr4	107681987	107682187	+	601.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019872, intron 1 of 3)	intron (NM_019872, intron 1 of 3)	1502.0	NR_151717	56296.0	Mm.141324	NM_019872	ENSMUSG00000028610	Dmrtb1	Dmrt6|Prp13	DMRT-like family B with proline-rich C-terminal, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125045348-2	chr6	125045248	125045448	+	668.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133345, intron 2 of 7)	intron (NM_133345, intron 2 of 7)	4505.0	NR_130997	78202.0	Mm.445941	NR_130997	ENSMUSG00000108034	4930557K07Rik	Gm43989	RIKEN cDNA 4930557K07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30708025-4	chr2	30707907	30708107	+	965.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-13203.0	NR_037272	100526499.0		NR_037272	ENSMUSG00000093091	Mir3089	mir-3089|mmu-mir-3089	microRNA 3089	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52599576-2	chr13	52599476	52599676	+	797.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_011518, intron 1 of 13)	intron (NM_011518, intron 1 of 13)	2694.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-18887116-4	chr10	18887019	18887219	+	928.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42048.0	NM_022032	64058.0	Mm.28209	NM_022032	ENSMUSG00000019851	Perp	1110017A08Rik|KCP1|KRTCAP1|PIGPC1|THW	PERP, TP53 apoptosis effector	protein-coding	4.0368675069895	3.52102405378893	4.02413850025635	3.48435272254634	3.62694798798426	3.6467847835417	3.69948672506615	4.68947410985054	0.295097425406922	0.557851327130608	0.960321604678676
Merged-chr18-73749613-3	chr18	73749519	73749719	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053255, intron 1 of 3)	intron (NM_053255, intron 1 of 3)	4860.0	NM_053255	114615.0	Mm.50642	NM_053255	ENSMUSG00000036941	Elac1	2610018O07Rik|8430417G19Rik	elaC ribonuclease Z 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-157444476-2	chr1	157444417	157444617	+	745.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14051.0	NM_001356418	226527.0	Mm.215960	NM_001033284	ENSMUSG00000033488	Cryzl2	-	crystallin zeta like 2	protein-coding	1.216781315831	0.664489490460405	0.6552313357616	0.962362061464387	1.03518313149135	1.03642361937869	1.35649731940172	0.96744794582095	1.00009907387867	0.494914004133718	1
Merged-chr13-5863741-4	chr13	5863623	5863823	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011803, intron 1 of 3)	intron (NM_011803, intron 1 of 3)	2234.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46152391-4	chr19	46152289	46152489	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178930)	promoter-TSS (NM_178930)	-169.0	NM_178930	107338.0	Mm.271620	NM_178930	ENSMUSG00000025224	Gbf1	1700083E03Rik|AI035702|AW049900|mKIAA0248	golgi-specific brefeldin A-resistance factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-111552053-4	chr9	111551933	111552133	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	112952.0	NM_172928	245038.0	Mm.26361	NM_172928	ENSMUSG00000032500	Dclk3	BC056929|C730036H08|Dcamkl3	doublecortin-like kinase 3	protein-coding	3.58682365129156	3.95069672313626	1.74056478912645	3.40365534477569	4.61544944952296	4.49461323165959	3.77788691332882	3.1267143678428	1.05395290853745	0.0944388963252943	0.475550312581511
Merged-chr11-121434952-4	chr11	121434851	121435051	+	985.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022014)	promoter-TSS (NM_022014)	-2.0	NM_001038699	63828.0	Mm.266448	NM_022014	ENSMUSG00000025175	Fn3k	2310074G21Rik	fructosamine 3 kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-98956318-2	chr7	98956218	98956418	+	663.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 12 of 14)	intron (NM_178635, intron 12 of 14)	117473.0	NM_001285795	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115187344-4	chr11	115187247	115187447	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025400)	promoter-TSS (NM_025400)	-31.0	NM_025400	66176.0	Mm.86823	NM_025400	ENSMUSG00000015542	Nat9	1110028N05Rik	N-acetyltransferase 9 (GCN5-related, putative)	protein-coding	6.91499100668784	6.83451835584049	6.38247557606211	6.17527267768044	6.49380012853733	6.03387196687036	7.00150851917556	6.88890263319587	0.0476678341078684	0.843707158044876	0.998431161219273
Merged-chr2-32882801-4	chr2	32882674	32882874	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146119, intron 1 of 13)	intron (NM_146119, intron 1 of 13)	6640.0	NM_146119	227737.0	Mm.301646	NM_146119	ENSMUSG00000026796	Fam129b	9130404D14Rik	family with sequence similarity 129, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-8433607-6	chr15	8433570	8433770	+	859.952759	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201232, intron 1 of 45)	intron (NM_201232, intron 1 of 45)	10793.0	NM_027707	71175.0	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	NIPBL cohesin loading factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-33941706-1	chr17	33941606	33941806	+	856.6666869999999	f1_c57bl6.idr	exon (NM_020603, exon 5 of 15)	exon (NM_020603, exon 5 of 15)	983.0	NM_020603	57315.0	Mm.2437	NM_020603	ENSMUSG00000024312	Wdr46	2310007I04Rik|Bing4|C78447|C78559	WD repeat domain 46	protein-coding	1.67535427839131	2.66524736402921	2.64025702452521	0.985403071967845	0.950084806520064	2.07327910254864	1.85499044695723	0.989630487780839	-1.50506760528824	0.216023742915695	0.706483609168411
Merged-chr6-145123916-4	chr6	145123827	145124027	+	864.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008511, intron 1 of 18)	intron (NM_008511, intron 1 of 18)	2188.0	NM_008511	16970.0	Mm.843	NM_008511	ENSMUSG00000030263	Lrmp	D6Int3|D6Int4|D6Int5|D6Int7|D6Int8|Jaw1	lymphoid-restricted membrane protein	protein-coding	2.58613469263347	1.59223623479272	2.22575454746683	1.70722760077603	3.01860699294132	1.32479063863382	2.66846242092855	2.03984266685268	0.723573225869608	0.458629905408944	0.919607527898796
Merged-chr1-180904239-4	chr1	180904144	180904344	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133705)	promoter-TSS (NM_133705)	-30.0	NM_133705	69051.0	Mm.274180	NM_133705	ENSMUSG00000026520	Pycr2	1810018M05Rik|P5cr2	pyrroline-5-carboxylate reductase family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65357130-4	chr9	65356958	65357158	+	994.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016688, intron 4 of 4)	B1_Mus2|SINE|Alu	-4002.0	NM_001111145	208080.0	Mm.291862	NM_001111145	ENSMUSG00000086228	Ubap1l	Gm514	ubiquitin-associated protein 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-109254154-4	chr3	109254055	109254255	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-86528.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	3.89936220811624	3.43447059027045	4.10671856329694	4.09234039649389	2.65801481996086	2.0653328499916	3.14250842220034	2.92929390600071	-1.82255900620566	0.00189513615540974	0.0320853860667066
Merged-chr12-73610243-4	chr12	73610140	73610340	+	912.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001313977, intron 2 of 14)	intron (NM_001313977, intron 2 of 14)	25444.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	0.880992905906975	0.605506055736349	1.54000600689577	0.585347849926223	1.01487685429802	0.608034637123744	1.46381576430924	0.940508988115149	0.288409320210938	0.853495722262698	0.998431161219273
Merged-chr1-156985922-2	chr1	156985822	156986022	+	769.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46296.0	NM_001357391	78255.0	Mm.28376	NM_023884	ENSMUSG00000026594	Ralgps2	1810020P17Rik|2210408F11Rik|4921528G01Rik|9130014M22Rik|AU043409|AW046161	Ral GEF with PH domain and SH3 binding motif 2	protein-coding	0.210094798290111	0.125288595703185	-0.179110743274325	-0.181573251023444	0.13638711276954	-0.175149397326595	-0.178402300384554	-0.0421710916714752	-0.660800914308675	0.772438281220264	1
Merged-chr2-34909513-2	chr2	34909413	34909613	+	889.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028716, intron 3 of 14)	B3|SINE|B2	4463.0	NM_028716	74016.0	Mm.65691	NM_028716	ENSMUSG00000026873	Phf19	3110009G19Rik|3321402G02Rik	PHD finger protein 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-8109157-3	chr14	8109073	8109273	+	745.111145	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360314, intron 1 of 19)	RMER15|LTR|ERVL	10962.0	NM_001360315	218699.0	Mm.29515	NM_145458	ENSMUSG00000033885	Pxk	C230080L11Rik|D14Ertd813e|Monaka|Slob	PX domain containing serine/threonine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-73138744-4	chr14	73138624	73138824	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3786.0	NM_001170694	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-137683914-3	chr5	137683858	137684058	+	806.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303271, intron 1 of 12)	ID_B1|SINE|B4	795.0	NM_001303271	231801.0	Mm.260869	NM_145566	ENSMUSG00000029722	Agfg2	A630095P14Rik|Hrbl|RAB-R|RABR	ArfGAP with FG repeats 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-33895183-4	chr4	33895092	33895292	+	884.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-29167.0	NM_001355020	12801.0	Mm.7992	NM_007726	ENSMUSG00000044288	Cnr1	CB-R|CB1|CB1R	cannabinoid receptor 1 (brain)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-130030024-3	chr5	130029931	130030131	+	797.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007761, intron 1 of 5)	MTD|LTR|ERVL-MaLR	725.0	NM_007761	12909.0	Mm.18072	NM_007761	ENSMUSG00000025532	Crcp	AL022669	calcitonin gene-related peptide-receptor component protein	protein-coding	0.395649247364707	0.0089373943111144	0.00526165586326216	0.258981962755383	0.404211417546278	0.00977232716473209	0.00606840403178133	0.262959788806045	0.037050807992424	0.986250331114768	1
Merged-chr4-46536116-4	chr4	46536026	46536226	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029077)	promoter-TSS (NM_029077)	15.0	NM_029077	74735.0	Mm.240252	NM_029077	ENSMUSG00000039853	Trim14	5830400N10Rik|pub	tripartite motif-containing 14	protein-coding	3.78965500338108	3.16611899843824	3.64327339529194	2.07758741374714	3.57030182313601	1.69858252096924	3.96640973626852	3.08237919323439	-0.00662854637673777	0.99292366714223	0.998431161219273
Merged-chr10-95617029-4	chr10	95616930	95617130	+	881.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-52884.0	NM_001358996	71207.0	Mm.24397	NM_027722	ENSMUSG00000020029	Nudt4	4933436C10Rik|DIPP-2|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P	nudix (nucleoside diphosphate linked moiety X)-type motif 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-118025986-4	chr2	118025884	118026084	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_126479, intron 8 of 9)	Tigger6a|DNA|TcMar-Tigger	85218.0	NR_126479	329496.0	Mm.235844	NR_126479	ENSMUSG00000087203	Gm13986	C230060E24	predicted gene 13986	ncRNA	4.15109445992967	4.7501315665915	4.3193661627272	4.93951530453505	5.28907750580052	4.97328855427573	5.47247836225951	5.33211990213405	0.85179780727169	0.0115095562770058	0.120149352852247
Merged-chr12-102680295-2	chr12	102680195	102680395	+	915.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172584, intron 1 of 9)	intron (NM_172584, intron 1 of 9)	4725.0	NR_035457	100316812.0		NR_035457	ENSMUSG00000089324	Mir1936	mir-1936|mmu-mir-1936	microRNA 1936	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19784666-2	chr7	19784566	19784766	+	688.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161844, intron 8 of 10)	B1_Mus2|SINE|Alu	12143.0	NM_001161844	80794.0	Mm.81698	NM_023224	ENSMUSG00000040525	Cblc	2310076I21Rik|2310079L19Rik|Cbl3	Casitas B-lineage lymphoma c	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-77550347-4	chr8	77550246	77550446	+	990.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081240, intron 1 of 11)	MER20|DNA|hAT-Charlie	949.0	NM_001081240	102182.0	Mm.197630	NM_178903	ENSMUSG00000037134	Prmt9	AI931714|Prmt10	protein arginine methyltransferase 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-39961438-2	chr1	39961338	39961538	+	673.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252202, intron 2 of 29)	(T)n|Simple_repeat|Simple_repeat	60525.0	NM_008696	26921.0	Mm.491139	NM_008696	ENSMUSG00000026074	Map4k4	9430080K19Rik|AU043147|AU045934|AW046177|HGK|Nik	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-86054080-2	chr15	86053980	86054180	+	794.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3615.0	NM_172611	223752.0	Mm.24442	NM_172611	ENSMUSG00000035900	Gramd4	9930016O13	GRAM domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91821681-2	chr16	91821581	91821781	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110276, intron 14 of 15)	intron (NM_001110276, intron 14 of 15)	92310.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-12119227-4	chr17	12119121	12119321	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026644)	promoter-TSS (NM_026644)	-63.0	NM_026644	68262.0	Mm.258300	NM_026644	ENSMUSG00000023827	Agpat4	1500003P24Rik	1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-150374827-1	chr1	150374727	150374927	+	753.0	f0_balb.idr	exon (NM_145511, exon 11 of 14)	exon (NM_145511, exon 11 of 14)	-18011.0	NM_133780	108989.0	Mm.174256	NM_133780	ENSMUSG00000006005	Tpr	2610029M07Rik|C77892	translocated promoter region, nuclear basket protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-50843457-1	chr14	50843357	50843557	+	787.5	f1_c57bl6.idr	intron (NM_009351, intron 27 of 54)	intron (NM_009351, intron 27 of 54)	27097.0	NM_009351	21745.0	Mm.318736	NM_009351	ENSMUSG00000006281	Tep1	Tp1	telomerase associated protein 1	protein-coding	-0.111933075255701	-0.0865370530326335	1.15005243840555	-0.101111528163815	0.58520254722207	-0.0847133463130504	-0.0928957112447007	-0.0999870363049138	-1.31939857787764	0.566645028755195	1
Merged-chr9-41137248-4	chr9	41137155	41137355	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176860, intron 1 of 13)	intron (NM_176860, intron 1 of 13)	20807.0	NM_176860	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	-1.17367364971587	-1.14665061133654	-1.15856004380685	-1.16834280623128	-1.17310571790619	-1.14406978763884	-0.42938571406771	-1.16659169643457	2.89727187181404	0.396361616615464	1
Merged-chr17-32364506-4	chr17	32364405	32364605	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033525, intron 4 of 10)	intron (NR_033525, intron 4 of 10)	-13928.0	NM_017476	54194.0	Mm.281005	NM_017476	ENSMUSG00000002625	Akap8l	HAP95|Nakap95	A kinase (PRKA) anchor protein 8-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120086332-2	chr11	120086232	120086432	+	969.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009734, intron 1 of 25)	intron (NM_009734, intron 1 of 25)	495.0	NM_009734	12009.0	Mm.2556	NM_009734	ENSMUSG00000039781	Cep131	AZ1|Azi|Azi1	centrosomal protein 131	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-13273927-4	chr10	13273780	13273980	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359294, intron 2 of 11)	intron (NM_001359294, intron 2 of 11)	50409.0	NM_001195096	215789.0	Mm.283359	NM_001033257	ENSMUSG00000062866	Phactr2	AV158170|BC012871	phosphatase and actin regulator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-46639817-4	chr7	46639716	46639916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013789)	promoter-TSS (NM_013789)	-9.0	NM_013789	27414.0	Mm.76659	NM_013789	ENSMUSG00000030839	Sergef	DelGEF|Gef|Gnef|Gnefr	secretion regulating guanine nucleotide exchange factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-120467528-3	chr1	120467426	120467626	+	758.0888669999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37498.0	NM_010766	17167.0	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	1.33196494159611	1.38624182896461	1.70662219333018	2.19010531408325	0.702803844522455	0.758675726546183	0.741073233295857	0.95095139621903	-4.37320736078558	0.00327486628511802	0.0483889725232094
Merged-chr13-81427609-2	chr13	81427509	81427709	+	832.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_054053, exon 71 of 90)	exon (NM_054053, exon 71 of 90)	205535.0	NM_054053	110789.0	Mm.288694	NM_054053	ENSMUSG00000069170	Adgrv1	Frings|Gpr98|Mass1|Mgr1|VLGR1	adhesion G protein-coupled receptor V1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89807349-4	chr3	89807234	89807434	+	933.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-24036.0	NM_172530	214547.0	Mm.225	NM_172530	ENSMUSG00000046280	She	9430022A14	src homology 2 domain-containing transforming protein E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-178409163-2	chr1	178409063	178409263	+	625.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026626, intron 1 of 6)	intron (NM_026626, intron 1 of 6)	3145.0	NM_026626	68226.0	Mm.252132	NM_026626	ENSMUSG00000026495	Efcab2	1700073K01Rik|D830011E08Rik	EF-hand calcium binding domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-121734414-4	chr11	121734301	121734501	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	31974.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-54040704-7	chr10	54040619	54040819	+	941.214294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008548, intron 2 of 12)	intron (NM_008548, intron 2 of 12)	35077.0	NM_008548	17155.0	Mm.117294	NM_008548	ENSMUSG00000003746	Man1a	Man1a1|PCR1	mannosidase 1, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-56703891-4	chr19	56703790	56703990	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18482.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95957566-4	chr3	95957469	95957669	+	885.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27941.0	NR_045872	668224.0	Mm.357766	NR_045872		Gm9054	EG668224	predicted gene 9054	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-86959113-1	chr11	86959013	86959213	+	547.0	f1_c57bl6.idr	intron (NM_001005341, intron 2 of 4)	intron (NM_001005341, intron 2 of 4)	34649.0	NM_001005341	77864.0	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-40737305-4	chr19	40737205	40737405	+	934.974976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304721, intron 9 of 9)	intron (NM_001304721, intron 9 of 9)	77535.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	4.16297621936741	4.57334676747554	4.33923634098495	3.82294955255848	3.51791193102792	3.47439760879061	3.64927713541677	4.19665152641601	-0.691466954416132	0.133682286131933	0.571352970272745
Merged-chr18-3890073-4	chr18	3889975	3890175	+	768.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_A|LINE|L1	-275757.0	NM_026092	67328.0	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-97628735-4	chr3	97628643	97628843	+	987.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161765)	promoter-TSS (NM_001161765)	-61.0	NM_010232	14263.0	Mm.385180	NM_010232	ENSMUSG00000028088	Fmo5	5033418D19Rik|AI195026	flavin containing monooxygenase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4303745-2	chr19	4303645	4303845	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290818, intron 1 of 20)	intron (NM_001290818, intron 1 of 20)	2477.0	NM_130863	110355.0	Mm.254144	NM_130863	ENSMUSG00000024858	Grk2	Adrbk-1|Adrbk1|Bark-1|beta ARK|betaARK1	G protein-coupled receptor kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-85709408-2	chr11	85709308	85709508	+	644.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045875, intron 1 of 5)	intron (NR_045875, intron 1 of 5)	10336.0	NR_045875	71489.0	Mm.442482	NR_045875	ENSMUSG00000086199	Bcas3os1	8430403D17Rik	breast carcinoma amplified sequence 3, opposite strand 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-93051120-4	chr10	93051015	93051215	+	842.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347060, intron 5 of 67)	intron (NM_001347060, intron 5 of 67)	30481.0	NM_001347060	380654.0	Mm.34980	NM_001347060	ENSMUSG00000020014	Cfap54	4930485B16Rik|Gm872	cilia and flagella associated protein 54	protein-coding	4.4642182691828	3.68338523203051	3.55652565270976	4.2559955692631	4.13221797697763	4.254486710947	3.76217728500542	4.46070076764642	0.162030033956683	0.720823146665179	0.998431161219273
Merged-chr11-97127771-2	chr11	97127671	97127871	+	615.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12440.0	NM_019507	57765.0	Mm.94519	NM_019507	ENSMUSG00000001444	Tbx21	TBT1|Tbet|Tblym	T-box 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-108663037-3	chr9	108662930	108663130	+	750.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020520, intron 1 of 8)	intron (NM_020520, intron 1 of 8)	932.0	NM_020520	57279.0	Mm.29666	NM_020520	ENSMUSG00000032602	Slc25a20	1110007P09Rik|C78826|Cact|mCAC	solute carrier family 25 (mitochondrial carnitine/acylcarnitine translocase), member 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-32215041-4	chr19	32214938	32215138	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 5 of 9)	intron (NM_144792, intron 5 of 9)	-4025.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-45411221-2	chr8	45411121	45411321	+	805.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_126166)	promoter-TSS (NM_126166)	-602.0	NM_126166	142980.0	Mm.33874	NM_126166	ENSMUSG00000031639	Tlr3	AI957183	toll-like receptor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-32789737-4	chr19	32789639	32789839	+	871.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008960, intron 2 of 8)	intron (NM_008960, intron 2 of 8)	32162.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-118479327-4	chr7	118479198	118479398	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12677.0	NM_001033380	319622.0	Mm.323386	NM_001033380	ENSMUSG00000095115	Itpripl2	C130081G24|E030018N11Rik	inositol 1,4,5-triphosphate receptor interacting protein-like 2	protein-coding	5.95983104932175	5.51035513556523	5.47304087711979	6.33374016876241	6.61298261885847	6.58575577086636	6.43444836192145	6.16846838323445	0.641034777681825	0.00940469247055094	0.104350339329535
Merged-chr5-139327296-2	chr5	139327196	139327396	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1832.0	NM_172723	231821.0	Mm.297819	NM_172723	ENSMUSG00000056413	Adap1	4930431P11Rik|Centa1|GC1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-11215718-3	chr12	11215601	11215801	+	782.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6753.0	NM_019544	56184.0	Mm.117113	NM_019544	ENSMUSG00000047002	Msgn1	Msgn|pMsgn1	mesogenin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-37204575-4	chr10	37204494	37204694	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65668.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-43735530-4	chr1	43735420	43735620	+	981.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024283, intron 1 of 3)	MTD|LTR|ERVL-MaLR	4918.0	NM_024283	78896.0	Mm.50109	NM_024283	ENSMUSG00000026051	1500015O10Rik	Ecrg4	RIKEN cDNA 1500015O10 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-131003518-1	chr6	131003418	131003618	+	540.0	f0_balb.idr	Intergenic	Intergenic	243844.0	NM_001170851	16633.0	Mm.4783	NM_008462	ENSMUSG00000030187	Klra2	Klra30|Ly49b	killer cell lectin-like receptor, subfamily A, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-149911277-4	chr1	149911174	149911374	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008869, intron 3 of 17)	intron (NM_008869, intron 3 of 17)	11165.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-106959757-4	chr8	106959664	106959864	+	943.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009229, intron 1 of 6)	MTC|LTR|ERVL-MaLR	24014.0	NM_009229	20650.0	Mm.30228	NM_009229	ENSMUSG00000041308	Sntb2	Snt2	syntrophin, basic 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-52226650-2	chr1	52226550	52226750	+	869.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081081, intron 1 of 17)	intron (NM_001081081, intron 1 of 17)	6582.0	NM_001081081	14660.0	Mm.398608	NM_001081081	ENSMUSG00000026103	Gls	6330442B14|AI314027|B230365M23Rik	glutaminase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152019301-4	chr1	152019198	152019398	+	989.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197990, intron 1 of 5)	intron (NM_197990, intron 1 of 5)	71022.0	NM_197990	69399.0	Mm.278031	NM_197990	ENSMUSG00000032666	1700025G04Rik	2610510E02Rik|2900042O04Rik	RIKEN cDNA 1700025G04 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70511991-2	chr8	70511891	70512091	+	751.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_151735, intron 1 of 1)	Lx7|LINE|L1	1505.0	NR_151735	78183.0	Mm.297372	NR_151735		4930522P08Rik	-	RIKEN cDNA 4930522P08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91872806-2	chr16	91872706	91872906	+	897.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010587, intron 28 of 38)	MER20|DNA|hAT-Charlie	58824.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-82854886-2	chr10	82854786	82854986	+	977.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001042523, intron 1 of 14)	L2|LINE|L2	-4320.0	NM_001042513	50493.0	Mm.210155	NM_015762	ENSMUSG00000020250	Txnrd1	TR|TR1|TrxR1	thioredoxin reductase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-94238797-2	chr16	94238697	94238897	+	833.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360045, intron 5 of 10)	intron (NM_001360045, intron 5 of 10)	51494.0	NM_001360045	110948.0	Mm.30921	NM_139145	ENSMUSG00000040820	Hlcs	410I21.SP6|D16Jhu34	holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34969571-1	chr17	34969471	34969671	+	689.0	f0_balb.idr	3' UTR (NM_010479, exon 1 of 1)	3' UTR (NM_010479, exon 1 of 1)	2585.0	NM_010479	193740.0	Mm.6388	NM_010479	ENSMUSG00000091971	Hspa1a	Hsp70-3|Hsp70.3|Hsp72|hsp68|hsp70A1	heat shock protein 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126591699-4	chr8	126591605	126591805	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001164598, exon 2 of 2)	exon (NM_001164598, exon 2 of 2)	1731.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-59216393-3	chr12	59216292	59216492	+	938.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033156, intron 1 of 3)	intron (NM_001033156, intron 1 of 3)	3091.0	NM_001033156	70611.0	Mm.311026	NM_001033156	ENSMUSG00000035329	Fbxo33	5730501N20Rik|AI642135	F-box protein 33	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115563887-1	chr5	115563787	115563987	+	662.0	f1_c57bl6.idr	TTS (NM_007475)	TTS (NM_007475)	-1376.0	NM_172719	231659.0	Mm.153014	NM_172719	ENSMUSG00000041638	Gcn1l1	4932409G22|AL022764|G431004K08Rik|GCN1L|Gcn1|mKIAA0219	GCN1 general control of amino-acid synthesis 1-like 1 (yeast)	protein-coding	0.378173112592583	0.640086225374439	0.400698553378331	1.61314158584135	0.708729635857857	0.413780626069648	1.07716530713325	0.594169975386665	-0.747965995364001	0.656627158036725	0.988505467120973
Merged-chr16-78205454-2	chr16	78205354	78205554	+	652.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50000.0	NR_045698	100503619.0	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-36314453-4	chr13	36314347	36314547	+	930.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039189, intron 3 of 5)	intron (NM_001039189, intron 3 of 5)	196804.0	NM_001039189	69955.0	Mm.70690	NM_024274	ENSMUSG00000021420	Fars2	Fars1|pheRS	phenylalanine-tRNA synthetase 2 (mitochondrial)	protein-coding	-0.00888249325674254	0.00911285766707903	0.691788440109133	-0.00131137036623902	-0.00775428649976487	0.52567616386316	0.481906617775942	-0.000516374417217608	0.386850405539804	0.862706989186955	1
Merged-chr5-9102659-2	chr5	9102559	9102759	+	640.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081029, intron 2 of 4)	intron (NM_001081029, intron 2 of 4)	1922.0	NM_001081029	652925.0	Mm.439954	NM_001081029	ENSMUSG00000079659	Tmem243	4930420K17Rik|E030031F02Rik	transmembrane protein 243, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-128103699-3	chr1	128103596	128103796	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357573)	promoter-TSS (NM_001357573)	390.0	NM_181750	226412.0	Mm.221041	NM_181750	ENSMUSG00000056211	R3hdm1	R3hdm	R3H domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-55204307-4	chr11	55204140	55204340	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153139)	promoter-TSS (NM_153139)	-100.0	NM_153139	215335.0	Mm.35732	NM_153139	ENSMUSG00000020261	Slc36a1	5830411H19Rik|AI839897|Pat1	solute carrier family 36 (proton/amino acid symporter), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-38395623-4	chr16	38395524	38395724	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_134102)	TTS (NM_134102)	33434.0	NM_022318	64082.0	Mm.390856	NM_022318	ENSMUSG00000022803	Popdc2	AV006127|Pop2	popeye domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134156362-4	chr6	134156285	134156485	+	655.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 3 of 8)	intron (NM_001303102, intron 3 of 8)	120685.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-113226703-3	chr5	113226594	113226794	+	830.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033428)	promoter-TSS (NM_001033428)	-215.0	NM_001033428	333048.0	Mm.332586	NM_001033428	ENSMUSG00000066964	Tmem211	Gm854	transmembrane protein 211	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-44407581-3	chr13	44407472	44407672	+	961.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Charlie4a|DNA|hAT-Charlie	-32155.0	NR_045489	69491.0	Mm.392410	NR_045489	ENSMUSG00000098144	1700029N11Rik	-	RIKEN cDNA 1700029N11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-6365939-4	chr4	6365832	6366032	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001098227, intron 1 of 8)	CpG	252.0	NM_001098227	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	5.77505703981457	5.21330872767989	4.85018106742508	5.29198018750251	5.59314314527146	5.08373209852742	5.2709175321828	5.60234082780599	0.0909473183923319	0.766132058809438	0.998431161219273
Merged-chr17-92204952-2	chr17	92204852	92205052	+	774.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-994065.0	NM_001315503	11516.0	Mm.3407	NM_009625	ENSMUSG00000024256	Adcyap1	PACAP	adenylate cyclase activating polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-135136664-3	chr1	135136561	135136761	+	745.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177081, intron 5 of 9)	intron (NM_177081, intron 5 of 9)	3352.0	NM_001356382	320139.0	Mm.258388	NM_177081	ENSMUSG00000031506	Ptpn7	BPTP-4|C920001D21Rik|HEPTP|LC-PTP|LPTP	protein tyrosine phosphatase, non-receptor type 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-96162240-1	chr5	96162140	96162340	+	1000.0	f0_balb.idr	promoter-TSS (NM_178854)	promoter-TSS (NM_178854)	-250.0	NM_144910	231464.0	Mm.28374	NM_144910	ENSMUSG00000034724	Cnot6l	4932442K20Rik	CCR4-NOT transcription complex, subunit 6-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-93346387-8	chr2	93346185	93346385	+	918.2802119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11798.0	NM_183180	241556.0	Mm.274159	NM_183180	ENSMUSG00000027217	Tspan18	2610042G18Rik|6720430O15|BB226562	tetraspanin 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-20039833-3	chr13	20039735	20039935	+	817.861084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50672.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	2.62567090338355	2.36490695435301	2.01735061421157	1.80690678548106	2.23982717771709	2.24808014466307	2.52391181146937	2.23766453620647	0.157685314085043	0.851923206776303	0.998431161219273
Merged-chr4-137610475-4	chr4	137610366	137610566	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355588, intron 6 of 26)	intron (NM_001355588, intron 6 of 26)	16294.0	NM_130879	170707.0	Mm.218478	NM_130879	ENSMUSG00000043411	Usp48	2810449C13Rik|AI115503|BC021769|D330022K21Rik|Usp31	ubiquitin specific peptidase 48	protein-coding	4.75735165031177	4.35138385774112	3.94364619594317	4.31748833402831	5.06031609693951	4.18306361985614	3.97446418295259	3.92368621402239	0.00847406019204107	0.984707810051889	0.998431161219273
Merged-chr17-65839759-2	chr17	65839659	65839859	+	774.333374	f1_balb.idr|f1_c57bl6.idr	intron (NR_152099, intron 20 of 20)	MTB_Mm|LTR|ERVL-MaLR	45164.0	NM_001198949	19765.0	Mm.17009	NM_009067	ENSMUSG00000024096	Ralbp1	RLIP76|Rip1	ralA binding protein 1	protein-coding	1.87731442539866	1.66269221668768	2.03619342904185	1.85946747688421	1.6551637096619	2.34563859668979	2.26499373911914	1.17579788571396	0.241706053786267	0.815281401828008	0.998431161219273
Merged-chr11-98770699-2	chr11	98770599	98770799	+	686.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_145434, exon 5 of 8)	exon (NM_145434, exon 5 of 8)	4678.0	NM_145434	217166.0	Mm.390397	NM_145434	ENSMUSG00000020889	Nr1d1	A530070C09Rik|R75201	nuclear receptor subfamily 1, group D, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-44538394-4	chr13	44538294	44538494	+	984.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	98667.0	NR_045489	69491.0	Mm.392410	NR_045489	ENSMUSG00000098144	1700029N11Rik	-	RIKEN cDNA 1700029N11 gene	ncRNA	4.64679681058264	4.68273789055959	3.62358338413136	4.02144626112828	4.06651888203129	2.73324671225575	3.65286941726945	4.57024893365926	-0.52433868323181	0.312311989047179	0.813717909699793
Merged-chr4-149690216-4	chr4	149690131	149690331	+	984.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029837, intron 1 of 23)	intron (NM_001029837, intron 1 of 23)	8477.0	NM_001164050	18707.0	Mm.229108	NM_008840	ENSMUSG00000039936	Pik3cd	2410099E07Rik|2610208K16Rik|AW545373|p110delta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-82764309-4	chr11	82764208	82764408	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025884)	promoter-TSS (NM_025884)	13.0	NM_009839	12467.0	Mm.4126	NM_009839	ENSMUSG00000020698	Cct6b	CCT-zeta-2|CCTzeta-2|Cctz-2|TCP-1-zeta-2	chaperonin containing Tcp1, subunit 6b (zeta)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-55551227-4	chr16	55551121	55551321	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	56490.0	NR_039578	100628589.0		NR_039578	ENSMUSG00000093292	Mir5118	mmu-mir-5118|mu-mir-5118	microRNA 5118	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-86217916-1	chr1	86217816	86218016	+	963.0	f0_balb.idr	intron (NM_027456, intron 19 of 20)	intron (NM_027456, intron 19 of 20)	63136.0	NM_001310702	78795.0	Mm.379264	NM_027456	ENSMUSG00000062590	Armc9	3830422A13Rik|4831423D23Rik|4930438O05Rik|5730415N24Rik	armadillo repeat containing 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-63712828-4	chr9	63712722	63712922	+	975.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016769, intron 1 of 8)	intron (NM_016769, intron 1 of 8)	45172.0	NM_016769	17127.0	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-135688141-4	chr1	135688043	135688243	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-31920.0	NM_001360782	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-40585856-4	chr6	40585768	40585968	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021364)	promoter-TSS (NM_021364)	-63.0	NM_001038604	23845.0	Mm.103765	NM_021364	ENSMUSG00000029915	Clec5a	Clecsf5|Ly100|MDL-1|Mdl1	C-type lectin domain family 5, member a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-99444288-2	chr10	99444188	99444388	+	600.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-164883.0	NR_038019	100504202.0	Mm.403801	NR_038019	ENSMUSG00000111962	Gm20110	-	predicted gene, 20110	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-59131826-1	chr12	59131726	59131926	+	1000.0	f0_balb.idr	intron (NM_001165253, intron 1 of 22)	intron (NM_001165253, intron 1 of 22)	373.0	NM_001165253	338320.0	Mm.213215	NM_146034	ENSMUSG00000021000	Mia2	Ctage5|D12Bwg0579e|Mea6|Mgea|Mgea6	melanoma inhibitory activity 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34123663-4	chr17	34123560	34123760	+	990.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010386, intron 1 of 5)	intron (NM_010386, intron 1 of 5)	828.0	NM_010386	14998.0	Mm.16373	NM_010386	ENSMUSG00000037649	H2-DMa	H-2Ma|H2-Ma	histocompatibility 2, class II, locus DMa	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-34562670-4	chr19	34562559	34562759	+	679.016663	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355262, intron 1 of 2)	intron (NM_001355262, intron 1 of 2)	11571.0	NM_001355262	15958.0	Mm.2036	NM_008332	ENSMUSG00000045932	Ifit2	AV302338|Ifi54|P54	interferon-induced protein with tetratricopeptide repeats 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-59078197-2	chr12	59078097	59078297	+	585.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11278.0	NM_008891	18949.0	Mm.22347	NM_008891	ENSMUSG00000020994	Pnn	AU045199|D12Ertd512e	pinin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-44383212-3	chr5	44383113	44383313	+	857.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-156607.0	NM_173764	231225.0	Mm.30688	NM_173764	ENSMUSG00000046985	Tapt1	4932414K18Rik	transmembrane anterior posterior transformation 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-170996995-4	chr1	170996904	170997104	+	986.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20933.0	NM_001077189	14130.0	Mm.425062	NM_010187	ENSMUSG00000026656	Fcgr2b	AI528646|CD32|F630109E10Rik|Fc[g]RII|FcgRII|Fcgr2|Fcgr2a|Fcr-2|Fcr-3|Ly-17|Ly-m20|LyM-1|Lym-1|fcRII	Fc receptor, IgG, low affinity IIb	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-102223071-4	chr7	102223000	102223200	+	980.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145583)	promoter-TSS (NM_145583)	72.0	NR_111937	233575.0	Mm.302013	NM_145583	ENSMUSG00000030990	Pgap2	1810006G21Rik|C76649|Frag1	post-GPI attachment to proteins 2	protein-coding	1.15038759144098	1.0177948927609	2.3100529706694	0.485676239698981	0.464383153277034	1.21585308842551	0.504258282923446	0.488243228779287	-2.71586117596468	0.0895522084965084	0.462143118325939
Merged-chr13-89838858-1	chr13	89838758	89838958	+	909.0	f0_balb.idr	Intergenic	Intergenic	-96346.0	NM_001134475	13003.0	Mm.158700	NM_019389	ENSMUSG00000021614	Vcan	5430420N07Rik|9430051N09|Cspg2|DPEAAE|NG2|PG-M|PG-M(V0)|PG-M(V1)|hdf	versican	protein-coding	2.0895733637055	1.22075624778024	1.45255757578856	1.80121532056041	2.86672304579583	1.22804707788393	2.41688287560162	3.11447158691071	2.0883975824575	0.0435884827873043	0.29962687914296
Merged-chr2-120008844-4	chr2	120008726	120008926	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355293, intron 2 of 30)	intron (NM_001355293, intron 2 of 30)	-8691.0	NR_106125	102466842.0		NR_106125	ENSMUSG00000098632	Mir7665	Gm27478|mmu-mir-7665	microRNA 7665	ncRNA	3.97609345318278	3.59956104181386	4.2891742737532	4.07400110404264	3.79497612392569	1.92396765482851	4.41662574877446	4.19726459304915	-0.19817279688361	0.733432006548098	0.998431161219273
Merged-chr5-51754631-2	chr5	51754531	51754731	+	591.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-186906.0	NR_132764	19017.0	Mm.259072	NM_008904	ENSMUSG00000029167	Ppargc1a	A830037N07Rik|Gm11133|PGC-1|PPARGC-1-alpha|Pgc-1alpha|Pgc1|Pgco1|Ppargc1	peroxisome proliferative activated receptor, gamma, coactivator 1 alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-72201051-4	chr4	72200964	72201164	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285529)	promoter-TSS (NM_001285529)	-171.0	NM_001285530	21885.0	Mm.278444	NM_011599	ENSMUSG00000008305	Tle1	C230057C06Rik|Estm14|Grg-1|Grg1|Tle4l	transducin-like enhancer of split 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-4346456-4	chr18	4346371	4346571	+	816.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007746, intron 2 of 7)	intron (NM_007746, intron 2 of 7)	6482.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53042758-2	chr4	53042658	53042858	+	881.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_013454, exon 41 of 50)	exon (NM_013454, exon 41 of 50)	30878.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27181872-2	chr17	27181772	27181972	+	689.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14108.0	NM_173027	271424.0	Mm.209679	NM_173027	ENSMUSG00000024210	Ip6k3	D830007E07Rik|Ihpk3	inositol hexaphosphate kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83593024-4	chr11	83592916	83593116	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009139)	promoter-TSS (NM_009139)	71.0	NM_009139	20305.0	Mm.137	NM_009139	ENSMUSG00000018927	Ccl6	MRP-1|Scya6|c10	chemokine (C-C motif) ligand 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-54195920-2	chr4	54195822	54196022	+	794.666626	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	369877.0	NM_028053	52076.0	Mm.27184	NM_028053	ENSMUSG00000028420	Tmem38b	1600017F22Rik|AA437809|AV051057|D4Ertd89e|TRIC-B|mg33b	transmembrane protein 38B	protein-coding	1.32462207018924	1.49910272518125	1.16093457313582	2.11334151443942	1.54554128975981	2.84341732332531	2.74210413115116	3.23050361591509	2.66002753226035	0.00796776949132517	0.0927528768016682
Merged-chr9-57744835-2	chr9	57744735	57744935	+	702.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153799, intron 6 of 6)	intron (NM_153799, intron 6 of 6)	21025.0	NM_007713	102414.0	Mm.25720	NM_007713	ENSMUSG00000032316	Clk3	AI256811	CDC-like kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-31088995-2	chr2	31088895	31089095	+	764.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355105, intron 4 of 15)	PB1D10|SINE|Alu	7505.0	NM_001177650	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-134097720-2	chr1	134097620	134097820	+	716.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13522.0	NM_001284525	71884.0	Mm.328268	NM_027979	ENSMUSG00000026450	Chit1	2300002L19Rik	chitinase 1 (chitotriosidase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24478876-4	chr17	24478797	24478997	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252463, intron 1 of 8)	CpG	181.0	NM_001252464	56716.0	Mm.289516	NM_019988	ENSMUSG00000024142	Mlst8	0610033N12Rik|AA409454|AI505104|AI851821|Gbl	MTOR associated protein, LST8 homolog (S. cerevisiae)	protein-coding	5.63925073882296	4.15293534639059	5.49457164300017	5.27924625457804	5.67665042845546	4.88371314920691	5.78036126591682	5.01142892309747	0.162510746865443	0.651260477058562	0.98617878044787
Merged-chr18-79936877-3	chr18	79936777	79936977	+	941.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-110018.0	NM_053117	93737.0	Mm.24678	NM_053117	ENSMUSG00000056214	Pard6g	2410049N21Rik|Par6a	par-6 family cell polarity regulator gamma	protein-coding	2.42410969197437	1.63427806705299	2.66581108465735	2.24403521793894	4.20179276241418	4.1250356597027	4.09851336462113	3.64381835986795	2.8533861394283	6.36967916796107e-06	0.000315799217591723
Merged-chr8-110845970-2	chr8	110845870	110846070	+	578.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310607)	promoter-TSS (NM_001310607)	-630.0	NM_001310607	102339.0	Mm.272930	NM_133973	ENSMUSG00000031753	Cog4	AW554810|D8Ertd515e	component of oligomeric golgi complex 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-24930365-4	chr10	24930280	24930480	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2910.0	NM_007482	11846.0	Mm.154144	NM_007482	ENSMUSG00000019987	Arg1	AI|AI256583|Arg-1|PGIF	arginase, liver	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-123270177-3	chr9	123270091	123270291	+	621.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9402.0	NM_001002267	72309.0	Mm.8569	NM_001002267	ENSMUSG00000054871	Tmem158	2310037P21Rik|Ris1	transmembrane protein 158	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-49184574-2	chr13	49184474	49184674	+	824.375	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2973.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-50741552-3	chr2	50741461	50741661	+	613.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-168123.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-97858629-3	chr15	97858561	97858761	+	993.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009504, intron 9 of 9)	intron (NM_009504, intron 9 of 9)	-14159.0	NM_001204278	56233.0	Mm.384027	NM_019572	ENSMUSG00000022475	Hdac7	5830434K02Rik|HD7|HD7a|Hdac7a|mFLJ00062	histone deacetylase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-120028314-2	chr4	120028214	120028414	+	775.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010657, intron 2 of 8)	intron (NM_010657, intron 2 of 8)	-132892.0	NM_007902	13615.0	Mm.284855	NM_007902	ENSMUSG00000028635	Edn2	ET-2|PPET2|VIC	endothelin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-8665515-2	chr16	8665415	8665615	+	619.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025821, intron 1 of 3)	intron (NM_025821, intron 1 of 3)	6638.0	NM_025821	52502.0	Mm.142095	NM_025821	ENSMUSG00000008393	Carhsp1	1200011K09Rik|Crhsp-24|D16Ertd465e	calcium regulated heat stable protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-8768313-2	chr3	8768213	8768413	+	608.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-101275.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-46366044-4	chr2	46365939	46366139	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	669434.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-81012329-2	chr8	81012229	81012429	+	679.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027554, intron 1 of 9)	intron (NM_027554, intron 1 of 9)	2577.0	NM_027554	74841.0	Mm.246018	NM_027554	ENSMUSG00000038250	Usp38	4631402N15Rik|4833420O05Rik|AA536967|AU044701|AW544820|mKIAA1891	ubiquitin specific peptidase 38	protein-coding	-1.84456824087626	-1.81369603968745	-1.82303204814395	-1.83070092346192	-1.84240106943552	-1.51787681909439	-1.82091858046888	-1.82932819844659	1.64481029852639	0.639921510788462	1
Merged-chr13-101805854-4	chr13	101805749	101805949	+	911.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37632.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-165132594-3	chr1	165132428	165132628	+	919.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28245.0	NM_032005	83993.0	Mm.190649	NM_032005	ENSMUSG00000026572	Tbx19	AU019250|D1Ertd754e|Tpit	T-box 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-125113987-2	chr4	125113887	125114087	+	593.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001290701)	TTS (NM_001290701)	13894.0	NM_153159	230738.0	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-53319134-2	chr19	53319034	53319234	+	630.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360348, intron 1 of 5)	intron (NM_001360348, intron 1 of 5)	7689.0	NM_001360348	17859.0	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-87408085-4	chr12	87407975	87408175	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19720.0	NM_011479	20773.0	Mm.565	NM_011479	ENSMUSG00000021036	Sptlc2	LCB2|LCB2a|Spt2	serine palmitoyltransferase, long chain base subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-80483733-4	chr18	80483640	80483840	+	984.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14073.0	NM_026295	67655.0	Mm.312893	NM_026295	ENSMUSG00000033323	Ctdp1	4930563P03Rik|AW553592	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-84779240-3	chr18	84779144	84779344	+	793.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35177.0	NR_155706	102641800.0		NR_155706		Gm38576	-	predicted gene, 38576	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-59310318-3	chr10	59310204	59310404	+	892.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12992.0	NM_001316371	18451.0	Mm.2212	NM_011030	ENSMUSG00000019916	P4ha1	AL022634|P4ha	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-79920074-4	chr11	79919968	79920168	+	870.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42319.0	NM_144826	216987.0	Mm.274961	NM_144826	ENSMUSG00000035575	Utp6	4732497O03Rik|HCA66	UTP6 small subunit processome component	protein-coding	-1.52696403314699	-1.49523967873556	-1.5048333853602	-1.51271394162622	-1.52473704212565	-1.49316068248889	-1.50266158046844	-1.06847079017215	2.01069003169785	0.564432837776867	1
Merged-chr6-35134722-3	chr6	35134590	35134790	+	863.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164411)	promoter-TSS (NM_001164411)	-953.0	NM_001164414	53621.0	Mm.214525	NM_016877	ENSMUSG00000038784	Cnot4	Not4|Not4h|Not4hp	CCR4-NOT transcription complex, subunit 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-89448996-4	chr6	89448902	89449102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167736, intron 4 of 6)	intron (NM_001167736, intron 4 of 6)	-86389.0	NM_008881	18844.0	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-99285691-2	chr5	99285591	99285791	+	551.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32764.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-80169215-4	chr18	80169119	80169319	+	954.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-17020.0	NR_131039	105246506.0	Mm.392326	NR_131039		LOC105246506	-	uncharacterized LOC105246506	ncRNA	2.90630697221544	3.69312399939217	2.16375963458816	3.72185386763799	2.9316832261962	3.71936709720436	2.18258376913496	3.74000662532876	0.0356407612521154	0.959338052444119	0.998431161219273
Merged-chr9-77920343-1	chr9	77920243	77920443	+	885.0	f1_c57bl6.idr	intron (NM_134255, intron 1 of 7)	ID_B1|SINE|B4	2978.0	NM_134255	68801.0	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	0.655869753975238	0.767367828146853	0.394125227111231	0.939130367564336	0.663034853106075	1.15528984683724	0.39584654706409	0.389145443694754	-0.030948180365859	0.985636906343534	1
Merged-chr17-62516341-4	chr17	62516239	62516439	+	944.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11B|LTR|ERVK	364978.0	NM_207654	13640.0	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-23438100-4	chr13	23437961	23438161	+	989.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7044.0	NR_015492	320842.0	Mm.487476	NR_015492	ENSMUSG00000085024	C230035I16Rik	-	RIKEN cDNA C230035I16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-58468762-2	chr3	58468662	58468862	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54042.0	NM_001347233	72033.0	Mm.218409	NM_001081229	ENSMUSG00000027806	Tsc22d2	1810043J12Rik|5530402M19Rik	TSC22 domain family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45549629-2	chr7	45549529	45549729	+	696.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_148927, intron 16 of 19)	intron (NM_148927, intron 16 of 19)	-5299.0	NM_025330	66065.0	Mm.285710	NM_025330	ENSMUSG00000030825	Hsd17b14	0610039E24Rik|Dhrs10|retSDR3	hydroxysteroid (17-beta) dehydrogenase 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-17527545-3	chr10	17527452	17527652	+	967.1333619999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-195676.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80206179-2	chr7	80206079	80206279	+	735.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360135, intron 1 of 13)	intron (NM_001360135, intron 1 of 13)	7738.0	NM_001360135	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81077759-4	chr15	81077674	81077874	+	899.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001082536, intron 2 of 13)	B3A|SINE|B2	27273.0	NM_153049	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-95833663-2	chr15	95833563	95833763	+	587.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253813, intron 2 of 20)	intron (NM_001253813, intron 2 of 20)	-3591.0	NR_155276	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165884757-4	chr2	165884656	165884856	+	981.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252584)	promoter-TSS (NM_001252584)	82.0	NM_001252584	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-38198396-4	chr16	38198303	38198503	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347232, intron 7 of 11)	MTC|LTR|ERVL-MaLR	96421.0	NM_010936	18171.0	Mm.8509	NM_010936	ENSMUSG00000022809	Nr1i2	PXR|PXR.1|PXR.2|PXR1|SXR|mPXR	nuclear receptor subfamily 1, group I, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-55349830-4	chr4	55349734	55349934	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009011)	promoter-TSS (NM_009011)	-208.0	NM_009011	19359.0	Mm.196846	NM_009011	ENSMUSG00000028426	Rad23b	0610007D13Rik|AV001138|HR23B|mHR23B|p58	RAD23 homolog B, nucleotide excision repair protein	protein-coding	6.9532633395268	7.04110935184227	7.89410144676481	7.07154901600142	7.19814511387074	7.7167497561797	7.68788951814527	7.23974512922837	0.191802217395828	0.365689521499562	0.861036332257394
Merged-chr1-145956181-2	chr1	145956081	145956281	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2B1|LTR|ERVL	-539448.0	NM_001357571	215378.0	Mm.441817	NM_153539	ENSMUSG00000035131	Brinp3	B830045N13Rik|Fam5c	bone morphogenetic protein/retinoic acid inducible neural specific 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65583610-2	chr9	65583510	65583710	+	646.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-3523.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-4160314-4	chr11	4160243	4160443	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164620)	promoter-TSS (NM_001164620)	-11.0	NM_026175	67465.0	Mm.156914	NM_026175	ENSMUSG00000002129	Sf3a1	1200014H24Rik|5930416L09Rik|AI159724	splicing factor 3a, subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134567048-6	chr6	134566945	134567145	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008514)	promoter-TSS (NM_008514)	-132.0	NM_008514	16974.0	Mm.321990	NM_008514	ENSMUSG00000030201	Lrp6	C030016K15Rik|Cd|Gw|ska26|ska<m26Jus>|skax26	low density lipoprotein receptor-related protein 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-84168921-2	chr17	84168821	84169021	+	782.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F|LINE|L1	19026.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-50838659-3	chr14	50838547	50838747	+	996.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009351, intron 34 of 54)	intron (NM_009351, intron 34 of 54)	30731.0	NM_009632	11546.0	Mm.281482	NM_009632	ENSMUSG00000036023	Parp2	ADPRT-2|ARTD2|Adprt2|Adprtl2|Aspartl2|C78626|PARP-2|mPARP-2|pADPRT-2	poly (ADP-ribose) polymerase family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-9628343-2	chr4	9628243	9628443	+	731.75	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001177856)	TTS (NM_001177856)	15374.0	NM_001177853	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5597218-2	chr17	5597118	5597318	+	641.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	104618.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191277850-4	chr1	191277696	191277896	+	996.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40322.0	NM_025424	66208.0	Mm.46444	NM_025424	ENSMUSG00000037499	Nenf	1110060M21Rik|SCIRP10|Spuf	neuron derived neurotrophic factor	protein-coding	2.04989004718471	3.03909936215248	1.53332581345149	1.27747882903158	0.984637317178439	1.7982399327837	1.32524089189497	2.28614379683239	-1.14050694667694	0.306372199447219	0.806865344318695
Merged-chr12-21129628-3	chr12	21129543	21129743	+	559.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004364, intron 1 of 26)	intron (NM_001004364, intron 1 of 26)	17887.0	NM_001135192	211914.0	Mm.358946	NM_001004364	ENSMUSG00000052632	Asap2	6530401G17Rik|Ddef2|Gm1523|Gm592|PAG3|PAP	ArfGAP with SH3 domain, ankyrin repeat and PH domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-83253286-4	chr17	83253199	83253399	+	885.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38016.0	NM_134117	106522.0	Mm.311974	NM_134117	ENSMUSG00000024247	Pkdcc	AI115348|AW548124|Adtk1|ESTM17|MAd1|Sgk493|Vlk|X83346	protein kinase domain containing, cytoplasmic	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34455886-4	chr17	34455783	34455983	+	844.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163855, intron 22 of 23)	intron (NM_001163855, intron 22 of 23)	20054.0	NM_030746	632126.0	Mm.484958	NM_030746	ENSMUSG00000058435	Btnl4	Btn3a3|EG632126|NG11	butyrophilin-like 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-37474250-4	chr1	37474135	37474335	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173870, intron 5 of 15)	intron (NM_173870, intron 5 of 15)	14370.0	NR_024017	77633.0	Mm.483177	NR_024017	ENSMUSG00000103948	4930594C11Rik	-	G1 to S phase transition pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-22431855-3	chr17	22431747	22431947	+	910.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198003, intron 2 of 6)	intron (NM_198003, intron 2 of 6)	7645.0	NM_001331198	74149.0	Mm.30767	NM_198003	ENSMUSG00000071266	Zfp946	1300003B13Rik	zinc finger protein 946	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-75283842-2	chr14	75283742	75283942	+	983.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026083)	promoter-TSS (NM_026083)	-524.0	NM_001359875	67302.0	Mm.74704	NM_026083	ENSMUSG00000022000	Zc3h13	2600010B19Rik|3110050K21Rik|4930570G11Rik|C87618	zinc finger CCCH type containing 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-51348223-4	chr12	51348111	51348311	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001167963)	promoter-TSS (NM_001167963)	-19.0	NM_001167964	217558.0	Mm.253264	NM_001015099	ENSMUSG00000035293	G2e3	6030408C04Rik|9030416F18|AW046379|D930034K21Rik|mKIAA1333	G2/M-phase specific E3 ubiquitin ligase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-31253737-2	chr5	31253637	31253837	+	666.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_027221)	TTS (NM_027221)	2031.0	NM_027221	69815.0	Mm.389609	NM_027221	ENSMUSG00000029149	Krtcap3	2010001C09Rik|AW321088|Kcp3	keratinocyte associated protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28740949-2	chr17	28740849	28741049	+	664.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001168508, intron 9 of 11)	intron (NM_001168508, intron 9 of 11)	-28368.0	NM_011950	26415.0	Mm.27970	NM_011950	ENSMUSG00000004864	Mapk13	SAPK4|Serk4	mitogen-activated protein kinase 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69965614-2	chr11	69965514	69965714	+	885.5	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_016887, exon 1 of 4)	5' UTR (NM_016887, exon 1 of 4)	193.0	NM_016887	53624.0	Mm.281896	NM_016887	ENSMUSG00000018569	Cldn7	-	claudin 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180399648-2	chr1	180399548	180399748	+	582.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081175, intron 2 of 7)	(ACTG)n|Simple_repeat|Simple_repeat	-69099.0	NR_003623	277333.0	Mm.389223	NM_199472		Gm5069	EG277333	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-18631895-4	chr19	18631814	18632014	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145497)	promoter-TSS (NM_145497)	-101.0	NM_017375	20409.0	Mm.172222	NM_017375	ENSMUSG00000024725	Ostf1	C78236|SH3P2|Sh3d3	osteoclast stimulating factor 1	protein-coding	6.42530333782433	6.84278634735481	6.51491385344675	6.11151393314831	7.14334877375401	7.21312011976737	6.66882465520522	6.77680533544709	0.508475639858986	0.0151777222848966	0.146541560065067
Merged-chr12-34789227-4	chr12	34789134	34789334	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271386, intron 3 of 27)	MLT1F|LTR|ERVL-MaLR	127861.0	NM_001271386	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	3.81889918372749	4.36442874352273	4.17759853974159	3.70084646122082	4.09534196889021	3.96225166634588	2.92271521285608	3.1961613019193	-0.561586425724496	0.273521079914279	0.777287048036837
Merged-chr19-55818143-4	chr19	55818050	55818250	+	894.974976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_138565, intron 4 of 15)	intron (NR_138565, intron 4 of 15)	76340.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132618025-4	chr4	132617922	132618122	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21024.0	NM_210071	14050.0	Mm.227733	NM_010166	ENSMUSG00000028886	Eya3	AI844637	EYA transcriptional coactivator and phosphatase 3	protein-coding	4.69370459801151	4.38398909419291	5.43972701452816	4.88329647013091	5.01124100868631	4.7621133083313	3.98205763355677	5.13806917537302	-0.134129756623701	0.727871034743186	0.998431161219273
Merged-chr10-94601195-4	chr10	94601080	94601280	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14981.0	NR_106070	102466817.0		NR_106070	ENSMUSG00000098544	Mir7211	Gm27536|mmu-mir-7211	microRNA 7211	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127597965-2	chr10	127597904	127598104	+	878.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 6 of 88)	intron (NM_008512, intron 6 of 88)	23144.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	1.83228344540256	1.4280219161109	2.09350746293275	1.81446743614537	1.31942238412359	1.80026822077902	1.74300113177392	2.30517957572973	0.0939411160737391	0.927533467358726	0.998431161219273
Merged-chr5-21367671-4	chr5	21367568	21367768	+	927.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029195, intron 2 of 18)	intron (NM_029195, intron 2 of 18)	-5005.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150567882-2	chr4	150567782	150567982	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 11 of 22)	intron (NM_001085492, intron 11 of 22)	84292.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-21556557-3	chr10	21556459	21556659	+	835.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36586.0	NR_027968	67692.0	Mm.54306	NM_183266	ENSMUSG00000050844	1700020N01Rik	-	RIKEN cDNA 1700020N01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117283525-2	chr11	117283425	117283625	+	598.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113487, intron 1 of 10)	intron (NM_001113487, intron 1 of 10)	17279.0	NM_001113487	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167056660-2	chr2	167056560	167056760	+	784.333374	f1_balb.idr|f1_c57bl6.idr	exon (NM_001033196, exon 3 of 14)	exon (NM_001033196, exon 3 of 14)	-6274.0	NR_138563	68949.0	Mm.391959	NM_001081005		Zfas1	1500012F01Rik|Zfos1	zinc finger, NFX1-type containing 1, antisense RNA 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-21681684-2	chr15	21681584	21681784	+	850.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	570232.0	NM_001008420	215654.0	Mm.300909	NM_001008420	ENSMUSG00000040452	Cdh12	Cdhb	cadherin 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-64016697-4	chr9	64016599	64016799	+	929.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008542, intron 1 of 3)	intron (NM_008542, intron 1 of 3)	5360.0	NM_008542	17130.0	Mm.325757	NM_008542	ENSMUSG00000036867	Smad6	Madh6|b2b390Clo	SMAD family member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141271457-2	chr7	141271357	141271557	+	655.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028069, intron 12 of 13)	intron (NM_028069, intron 12 of 13)	-5033.0	NM_001252600	54123.0	Mm.3233	NM_016850	ENSMUSG00000025498	Irf7	-	interferon regulatory factor 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-42968884-3	chr4	42968774	42968974	+	923.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1072.0	NM_026088	67317.0	Mm.478018	NM_026088	ENSMUSG00000028451	1700022I11Rik	-	RIKEN cDNA 1700022I11 gene	protein-coding	5.324672654599	4.91237834359221	6.32503309699	5.0076760985203	3.57575260591087	3.28655969209397	4.50485181099218	2.89019113326492	-2.23233636481586	1.51808794390015e-06	9.23007727242262e-05
Merged-chr10-99076248-2	chr10	99076148	99076348	+	719.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30834.0	NM_027740	382406.0	Mm.440656	NM_027740	ENSMUSG00000019952	Poc1b	4933430F16Rik|Wdr51b	POC1 centriolar protein B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-94680854-4	chr15	94680746	94680946	+	955.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178789, intron 2 of 7)	RMER1A|Other|Other	51661.0	NM_178789	320709.0	Mm.74873	NM_178789	ENSMUSG00000063296	Tmem117	B930062P21Rik	transmembrane protein 117	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52535695-3	chr13	52535567	52535767	+	733.944458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4831.0	NM_001024474	68203.0	Mm.29362	NM_001024474	ENSMUSG00000047842	Diras2	2900052J15Rik|AI414999	DIRAS family, GTP-binding RAS-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-158546975-2	chr2	158546875	158547075	+	968.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145015, intron 12 of 14)	intron (NM_001145015, intron 12 of 14)	34179.0	NM_001145015	545481.0	Mm.125371	NM_001145015	ENSMUSG00000074625	Arhgap40	C20orf95|Gm14203	Rho GTPase activating protein 40	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-138283676-2	chr5	138283576	138283776	+	556.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016964, intron 4 of 33)	intron (NM_016964, intron 4 of 33)	3167.0	NM_016964	50878.0	Mm.285609	NM_016964	ENSMUSG00000036928	Stag3	SA-2	stromal antigen 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-79970885-2	chr10	79970785	79970985	+	626.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_130455, exon 1 of 9)	5' UTR (NM_130455, exon 1 of 9)	161.0	NM_130455	170483.0	Mm.391566	NM_130455	ENSMUSG00000035745	Grin3b	GluN3B|NR3B	glutamate receptor, ionotropic, NMDA3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-76899211-2	chr16	76899111	76899311	+	657.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	111670.0	NR_040573	76601.0	Mm.396217	NR_040573	ENSMUSG00000100857	1700041M19Rik	-	RIKEN cDNA 1700041M19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-103045986-2	chr10	103045886	103046086	+	735.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17209.0	NM_172553	216285.0	Mm.19287	NM_172553	ENSMUSG00000036602	Alx1	AI314867|C130005I02|Cart1	ALX homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-8921209-3	chr19	8921131	8921331	+	877.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024256, intron 1 of 4)	intron (NM_024256, intron 1 of 4)	838.0	NM_024256	72727.0	Mm.259	NM_024256	ENSMUSG00000071649	B3gat3	2810405M13Rik	beta-1,3-glucuronyltransferase 3 (glucuronosyltransferase I)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-64692195-2	chr9	64692095	64692295	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001134399, intron 17 of 24)	intron (NM_001134399, intron 17 of 24)	45561.0	NM_017382	53869.0	Mm.1387	NM_017382	ENSMUSG00000004771	Rab11a	-	RAB11A, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-49022346-4	chr14	49022280	49022480	+	655.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207214, intron 13 of 17)	L2a|LINE|L2	-44169.0	NM_001360070	74385.0	Mm.379235	NM_144535	ENSMUSG00000036291	Ap5m1	4932432K03Rik|Mu5|Mudeng	adaptor-related protein complex 5, mu 1 subunit	protein-coding	0.621363878967738	1.02710707734653	1.47955444589957	0.472763598980776	0.626581544979102	0.492002758430687	0.84829332143292	0.815007833678484	-1.35337352153024	0.391661939933537	1
Merged-chr17-47600151-4	chr17	47600040	47600240	+	810.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001081636)	TTS (NM_001081636)	6673.0	NM_007632	12445.0	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-67246897-3	chr7	67246766	67246966	+	779.766663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357324, intron 8 of 11)	L1MCa|LINE|L1	24250.0	NM_001191051	75099.0	Mm.121691	NM_175215	ENSMUSG00000043831	Lysmd4	4930506D23Rik	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-129421448-4	chr6	129421363	129421563	+	979.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205363, intron 6 of 6)	MTC|LTR|ERVL-MaLR	12601.0	NM_001205364	232414.0	Mm.391518	NM_172732	ENSMUSG00000046080	Clec9a	9830005G06Rik|DNGR-1	C-type lectin domain family 9, member a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-83988435-2	chr12	83988335	83988535	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_134188, exon 1 of 3)	exon (NM_134188, exon 1 of 3)	574.0	NM_134188	171210.0	Mm.371675	NM_134188	ENSMUSG00000021226	Acot2	AA571646|MTE-I|Mte1	acyl-CoA thioesterase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-5819377-1	chr11	5819277	5819477	+	560.0	f1_c57bl6.idr	Intergenic	RLTR16|LTR|ERVK	-15581.0	NM_018870	56012.0	Mm.219627	NM_018870	ENSMUSG00000020475	Pgam2	-	phosphoglycerate mutase 2	protein-coding	-2.18292257394068	-2.15545247547656	-2.03304972317742	-2.17058342868585	-2.18099422382073	-2.1536522739386	-2.16187909550322	-2.16936197735154	-0.683654500252594	0.846597994014493	1
Merged-chr7-143043126-4	chr7	143043019	143043219	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110355, intron 2 of 4)	intron (NR_110355, intron 2 of 4)	-9631.0	NM_133655	12520.0	Mm.806	NM_133655	ENSMUSG00000037706	Cd81	Tapa-1|Tapa1|Tspan28	CD81 antigen	protein-coding	4.67175426511237	4.46312366289178	4.86778607517714	5.16006972884184	4.81078702933477	4.96658240901684	4.577713885529	5.42669589877937	0.19988988987233	0.567846225877924	0.962562732139494
Merged-chr5-113768650-2	chr5	113768550	113768750	+	663.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_151532, intron 1 of 16)	RSINE1|SINE|B4	3750.0	NR_151532	53890.0	Mm.29594	NM_016926	ENSMUSG00000018974	Sart3	AU045857|mKIAA0156	squamous cell carcinoma antigen recognized by T cells 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-85383595-4	chr15	85383466	85383666	+	771.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016843, intron 6 of 11)	intron (NM_016843, intron 6 of 11)	47185.0	NM_016843	54138.0	Mm.248906	NM_016843	ENSMUSG00000016541	Atxn10	AI325283|C77170|E46|Sca10|TEG-169|Tex169	ataxin 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-90783871-4	chr5	90783784	90783984	+	952.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2217.0	NM_203320	330122.0	Mm.244289	NM_203320	ENSMUSG00000029379	Cxcl3	Dcip1|Gm1960	chemokine (C-X-C motif) ligand 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-84152158-4	chr7	84152047	84152247	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133722)	promoter-TSS (NM_133722)	-254.0	NM_133722	70178.0	Mm.23914	NM_133722	ENSMUSG00000038459	Abhd17c	2210412D01Rik|AL023007|Fam108c|Fam108c1	abhydrolase domain containing 17C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-43363104-4	chr16	43362997	43363197	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181058, intron 2 of 6)	LFSINE_Vert|SINE|tRNA	57099.0	NR_046026	626693.0	Mm.447083	NR_046026	ENSMUSG00000085499	Gm15713	-	predicted gene 15713	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6067956-4	chr19	6067855	6068055	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028454)	promoter-TSS (NM_028454)	-105.0	NM_028454	73166.0	Mm.489613	NM_028454	ENSMUSG00000024799	Tm7sf2	3110041O18Rik|ANG1|C14SR|Dhcr14	transmembrane 7 superfamily member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-128475455-2	chr7	128475355	128475555	+	815.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-13782.0	NM_001347640	21843.0	Mm.242072	NM_009383	ENSMUSG00000030846	Tial1	5330433G13Rik|AL033329|TIAR|mTIAR	Tia1 cytotoxic granule-associated RNA binding protein-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-155751502-4	chr2	155751314	155751514	+	927.216675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011171, exon 1 of 4)	exon (NM_011171, exon 1 of 4)	197.0	NM_011171	19124.0	Mm.3243	NM_011171	ENSMUSG00000027611	Procr	AI325044|Ccca|Ccd41|Epcr	protein C receptor, endothelial	protein-coding	0.49537994562809	1.18490808837285	0.0769966009254062	0.559488917244711	0.0619525479703789	0.0867138125562085	0.0787559634630431	0.0718908538438894	-4.30146610243152	0.0342497481877266	1
Merged-chr5-35726033-2	chr5	35725933	35726133	+	669.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359895, intron 1 of 17)	intron (NM_001359895, intron 1 of 17)	3243.0	NM_194344	231147.0	Mm.290429	NM_194344	ENSMUSG00000036553	Sh3tc1	4631428G15|BC024909	SH3 domain and tetratricopeptide repeats 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-107509765-2	chr11	107509665	107509865	+	889.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30237.0	NM_025894	66997.0	Mm.491171	NM_025894	ENSMUSG00000020720	Psmd12	1500002F15Rik|AI480719|P55	proteasome (prosome, macropain) 26S subunit, non-ATPase, 12	protein-coding	-0.868018997351096	-0.856125619717114	-0.290795791874006	-0.558349330615429	-0.867446390878291	-0.853371970863287	-0.861175866065711	-0.863760080769826	-3.03584662398738	0.310168621537312	1
Merged-chr5-138116966-4	chr5	138116868	138117068	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011757)	promoter-TSS (NM_011757)	63.0	NM_001044705	22697.0	Mm.2760	NM_011757	ENSMUSG00000037017	Zscan21	AI326272|CTfin51|RU49|Zfp-38|Zfp38|Zipro1	zinc finger and SCAN domain containing 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-73424435-2	chr15	73424335	73424535	+	943.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1244.0	NM_001358045	14083.0	Mm.254494	NM_007982	ENSMUSG00000022607	Ptk2	FADK 1|FAK|FRNK|Fadk|p125FAK	PTK2 protein tyrosine kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-136908140-4	chr5	136908061	136908261	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026073)	promoter-TSS (NM_026073)	11.0	NM_026073	67286.0	Mm.41779	NM_026073	ENSMUSG00000007987	Ift22	3110017O03Rik|AI835745|AI847427|Rabl5	intraflagellar transport 22	protein-coding	-0.151591052260365	-0.130940799197888	0.714739633291343	-0.142844897156857	-0.150282248982373	-0.12944136653855	0.729351554324659	-0.141931488452262	0.041083046276385	0.986412301813541	1
Merged-chr15-72813215-3	chr15	72813067	72813267	+	716.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164641, intron 17 of 17)	intron (NM_001164641, intron 17 of 17)	-2843.0	NR_002864	353342.0	Mm.440245	NR_002864	ENSMUSG00000106847	Peg13	-	paternally expressed 13	ncRNA	-2.18292257394068	-2.15545247547656	-2.03304972317742	-2.17058342868585	-2.18099422382073	-2.1536522739386	-2.16187909550322	-2.16936197735154	-0.683654500252594	0.846597994014493	1
Merged-chr11-97987272-2	chr11	97987172	97987372	+	790.400024	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028199)	promoter-TSS (NM_028199)	-826.0	NM_001163608	72324.0	Mm.39617	NM_028199	ENSMUSG00000017417	Plxdc1	2410003I07Rik|AI848450|Tem7	plexin domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-18065321-7	chr2	18065222	18065422	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010804, intron 2 of 22)	CpG-7762	737.0	NM_001252561	17354.0	Mm.209175	NM_010804	ENSMUSG00000026743	Mllt10	Af10|B130021D15Rik|D630001B22Rik|mKIAA4140	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-12115712-4	chr2	12115632	12115832	+	930.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001309, intron 28 of 29)	intron (NM_001001309, intron 28 of 29)	-185514.0	NR_040353	338535.0	Mm.483275	NR_040353	ENSMUSG00000086843	E030013I19Rik	-	RIKEN cDNA E030013I19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-11321313-4	chr19	11321215	11321415	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001276398, exon 7 of 7)	3' UTR (NM_001276398, exon 7 of 7)	13380.0	NM_001276398	109225.0	Mm.491251	NM_027836	ENSMUSG00000024672	Ms4a7	9130422I10Rik|A430103C15Rik|CD20l4|CFFMA	membrane-spanning 4-domains, subfamily A, member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-172520626-2	chr1	172520526	172520726	+	812.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027972)	promoter-TSS (NM_027972)	-504.0	NM_027972	71870.0	Mm.78373	NM_027972	ENSMUSG00000026546	Cfap45	1700028D05Rik|Ccdc19|Nesg1	cilia and flagella associated protein 45	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-145599422-4	chr6	145599295	145599495	+	960.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16568.0	NM_009449	22147.0	Mm.270295	NM_009449	ENSMUSG00000067338	Tuba3b	M[a]7|Tuba7	tubulin, alpha 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-97082166-2	chr7	97082066	97082266	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162477, intron 1 of 9)	CpG	415.0	NM_010248	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-64295501-4	chr1	64295412	64295612	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4b|LINE|L1	-174123.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-15848203-4	chr13	15848090	15848290	+	987.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155430, intron 3 of 3)	intron (NR_155430, intron 3 of 3)	40947.0	NR_046131	328190.0	Mm.446957	NR_046131	ENSMUSG00000113338	A530046M15Rik	A530046M15	RIKEN cDNA A530046M15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-59969966-4	chr10	59969922	59970122	+	972.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18252.0	NM_029083	74747.0	Mm.21697	NM_029083	ENSMUSG00000020108	Ddit4	5830413E08Rik|AA415483|REDD1|Rtp801|dig2	DNA-damage-inducible transcript 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128412821-4	chr10	128412726	128412926	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026259, intron 1 of 7)	intron (NM_026259, intron 1 of 7)	1210.0	NM_026259	67588.0	Mm.294120	NM_026259	ENSMUSG00000025373	Rnf41	2210404G21Rik|4930511A05Rik|4933415P08Rik|D10Ertd722e|FLRF|Nrdp1	ring finger protein 41	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-46126641-4	chr4	46126522	46126722	+	825.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355375, intron 4 of 9)	intron (NM_001355375, intron 4 of 9)	11853.0	NM_173033	272027.0	Mm.249594	NM_173033	ENSMUSG00000035495	Tstd2	3010020C06	thiosulfate sulfurtransferase (rhodanese)-like domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81501227-2	chr10	81501189	81501389	+	764.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1152.0	NM_010102	13611.0	Mm.33065	NM_010102	ENSMUSG00000044199	S1pr4	Edg6|Lpc1|S1p4	sphingosine-1-phosphate receptor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-88506510-2	chr15	88506410	88506610	+	646.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-93792.0	NM_027306	70073.0	Mm.45306	NM_027306	ENSMUSG00000054117	Zdhhc25	1700030J15Rik	zinc finger, DHHC domain containing 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25132112-2	chr7	25132012	25132212	+	973.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163556, intron 1 of 13)	intron (NM_001163556, intron 1 of 13)	348.0	NM_011138	18987.0	Mm.76683	NM_011138	ENSMUSG00000008496	Pou2f2	Oct-2|Oct2a|Oct2b|Oct2c|Oct2d|Otf-2|Otf2	POU domain, class 2, transcription factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-67648068-2	chr11	67647976	67648176	+	620.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001109657, intron 4 of 13)	intron (NM_001109657, intron 4 of 13)	-47250.0	NM_009038	19674.0	Mm.439726	NM_009038	ENSMUSG00000020907	Rcvrn	CAR|S-modulin	recoverin	protein-coding	0.0801129398679561	0.998578863637956	0.834696927423018	0.0899446836073634	0.0815837864707408	0.105026233401009	0.0974733689758656	0.436417116431496	-2.5877074980339	0.22827816981749	1
Merged-chr4-12538742-3	chr4	12538633	12538833	+	673.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-366718.0	NM_026558	68099.0	Mm.25340	NM_026558	ENSMUSG00000028218	Fam92a	6720467C03Rik|Fam92a1	family with sequence similarity 92, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-87854587-4	chr10	87854461	87854661	+	788.200012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3704.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-95001855-4	chr8	95001760	95001960	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018882, intron 1 of 13)	intron (NM_018882, intron 1 of 13)	-15832.0	NM_173036	54672.0	Mm.27995	NM_173036	ENSMUSG00000060470	Adgrg3	A030001G24Rik|AW214383|Gpr97|Pb1|Pb99	adhesion G protein-coupled receptor G3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44855361-2	chr7	44855261	44855461	+	966.666626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001290695)	TTS (NM_001290695)	-1785.0	NM_021549	59047.0	Mm.238254	NM_021549	ENSMUSG00000002963	Pnkp	1810009G08Rik|PNK	polynucleotide kinase 3'- phosphatase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-19128035-3	chr10	19127921	19128121	+	651.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13728.0	NR_038021	100504265.0	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-131391893-2	chr7	131391793	131391993	+	623.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_175115, exon 4 of 4)	exon (NM_175115, exon 4 of 4)	18585.0	NM_175115	67143.0	Mm.334273	NM_175115	ENSMUSG00000040167	Ikzf5	2610034F18Rik|PEGASUS|Zfpn1a5	IKAROS family zinc finger 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-77417207-3	chr10	77417085	77417285	+	876.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024838, intron 1 of 11)	intron (NM_001024838, intron 1 of 11)	1088.0	NM_130895	110532.0	Mm.276815	NM_130895	ENSMUSG00000020262	Adarb1	1700057H01Rik|AW124433|AW558573|Adar2|BB220382|D10Bwg0447e|Red1	adenosine deaminase, RNA-specific, B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-110842616-1	chr7	110842516	110842716	+	542.0	f1_balb.idr	intron (NM_025999, intron 1 of 5)	B4|SINE|B4	1765.0	NM_025999	67150.0	Mm.96867	NM_025999	ENSMUSG00000030788	Rnf141	2610110L04Rik|AA792898|AU022812|ZFP36|ZNF230	ring finger protein 141	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-35376587-4	chr8	35376490	35376690	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177741, intron 1 of 1)	CpG	849.0	NM_177741	244416.0	Mm.247126	NM_177741	ENSMUSG00000046794	Ppp1r3b	6430576E21|AW821953|GL|PTG	protein phosphatase 1, regulatory (inhibitor) subunit 3B	protein-coding	6.27379969185932	6.09307883348579	6.11217587097066	6.51282823364989	6.40107266409963	6.08407612016829	6.13071641181747	6.63900432655106	0.0819988443382841	0.71126860696859	0.998431161219273
Merged-chr4-123491683-2	chr4	123491583	123491783	+	688.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199137, intron 27 of 92)	intron (NM_001199137, intron 27 of 92)	-79772.0	NM_001167918	442834.0	Mm.483803	NM_001167918		D830031N03Rik	Kiaa0754|mKIAA0754	RIKEN cDNA D830031N03 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-17634857-2	chr14	17634757	17634957	+	571.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26103.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-93780799-2	chr2	93780699	93780899	+	547.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355076, intron 7 of 10)	intron (NM_001355076, intron 7 of 10)	41769.0	NM_010163	14043.0	Mm.4336	NM_010163	ENSMUSG00000027198	Ext2	AI893565	exostoses (multiple) 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-60671347-3	chr13	60671281	60671481	+	863.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	69170.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-94157127-2	chr2	94157027	94157227	+	796.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019657, intron 1 of 10)	intron (NM_019657, intron 1 of 10)	782.0	NM_019657	56348.0	Mm.22505	NM_019657	ENSMUSG00000027195	Hsd17b12	2610510O05Rik|AI172963|KIK-I|Kik1	hydroxysteroid (17-beta) dehydrogenase 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-146671619-4	chr6	146671509	146671709	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14391.0	NR_046277	74925.0	Mm.386304	NR_046277	ENSMUSG00000085238	4930479D17Rik	-	RIKEN cDNA 4930479D17 gene	ncRNA	4.26852468141246	4.42368864405496	4.5702547610886	4.5951166516586	5.19784527043296	6.11120025618224	6.06523830436488	5.49734927506369	1.51480015478714	4.11646150910614e-06	0.00021661975958884
Merged-chr11-97500517-2	chr11	97500417	97500617	+	588.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289118)	promoter-TSS (NM_001289118)	-177.0	NM_001289118	100141474.0	Mm.482426	NM_001289118	ENSMUSG00000047988	4933428G20Rik	-	RIKEN cDNA 4933428G20 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-112759084-4	chr6	112758982	112759182	+	962.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080448, intron 11 of 21)	intron (NM_080448, intron 11 of 21)	-62412.0	NM_001167730	58186.0	Mm.103812	NM_021385	ENSMUSG00000030254	Rad18	2810024C04Rik|Rad18sc	RAD18 E3 ubiquitin protein ligase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-41261838-2	chr10	41261738	41261938	+	986.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_133999, intron 10 of 22)	intron (NM_133999, intron 10 of 22)	41403.0	NM_133999	103199.0	Mm.277242	NM_133999	ENSMUSG00000038417	Fig4	A530089I17Rik|AI326867|Sac3	FIG4 phosphoinositide 5-phosphatase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-68318494-2	chr15	68318394	68318594	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19016.0	NR_029534	387226.0		NR_029534	ENSMUSG00000065476	Mir30b	Mirn30b|mir-30b|mmu-mir-30b	microRNA 30b	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-36690689-4	chr7	36690587	36690787	+	803.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7431.0	NM_172298	243931.0	Mm.44141	NM_172298	ENSMUSG00000021217	Tshz3	A630038G13Rik|Tsh3|Zfp537|mKIAA1474|teashirt3	teashirt zinc finger family member 3	protein-coding	1.72229617594048	1.09852950330539	2.15540076223306	1.70397179636931	1.63167048892666	1.82871723383149	1.48064039200855	1.44051826526484	-0.417972492889275	0.706491687689681	0.998431161219273
Merged-chr7-125603513-1	chr7	125603413	125603613	+	735.333313	f1_c57bl6.idr	promoter-TSS (NM_021887)	promoter-TSS (NM_021887)	84.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	1.16759103354225	2.34339517702767	2.327181225527	1.91095536122415	0.990219622627831	0.837145699900199	0.813404036990406	0.792326534300481	-4.68151109960892	0.00101030305761918	0.0197206335444386
Merged-chr19-14597465-7	chr19	14597283	14597483	+	970.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302951)	promoter-TSS (NM_001302951)	-170.0	NM_001302951	21888.0	Mm.103638	NM_011600	ENSMUSG00000024642	Tle4	5730411M05Rik|AA792082|Bce-1|Bce1|ESTM13|ESTM14|Grg4|X83332|X83333|grg-4	transducin-like enhancer of split 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-8665423-4	chr15	8665303	8665503	+	872.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_148938, intron 3 of 9)	intron (NM_148938, intron 3 of 9)	45404.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-98356710-2	chr7	98356610	98356810	+	902.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001168541, intron 2 of 3)	intron (NM_001168541, intron 2 of 3)	4578.0	NM_001168540	244152.0	Mm.25317	NM_001024619	ENSMUSG00000049580	Tsku	9530051K01Rik|E2ig4|Lrrc54|Tsk	tsukushi, small leucine rich proteoglycan	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-68935262-3	chr18	68935161	68935361	+	811.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038051, intron 3 of 6)	intron (NR_038051, intron 3 of 6)	16267.0	NR_038051	78931.0	Mm.160155	NR_038051		4930546C10Rik	-	RIKEN cDNA 4930546C10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78172486-2	chr15	78172386	78172586	+	788.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_025931, intron 1 of 6)	intron (NM_025931, intron 1 of 6)	1622.0	NM_025931	67042.0	Mm.30191	NM_025931	ENSMUSG00000016637	Ift27	2600013G09Rik|Rabl4	intraflagellar transport 27	protein-coding	-1.25043705834432	-1.22344025710165	-1.23393384777392	-1.24255359558995	-1.10155481940592	-1.22116625222791	-0.775165256172952	-1.24101066485209	2.4860994894339	0.452464134362524	1
Merged-chr16-22262996-3	chr16	22262889	22263089	+	881.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001330555, intron 1 of 9)	intron (NM_001330555, intron 1 of 9)	3016.0	NM_001330554	20462.0	Mm.210352	NM_009186	ENSMUSG00000022858	Tra2b	5730405G21Rik|D16Ertd266e|SIG-41|Sfrs10|Silg41|TRA2beta	transformer 2 beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-99263471-4	chr13	99263361	99263561	+	807.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	78638.0	NM_001004149	238803.0	Mm.343207	NM_001004149	ENSMUSG00000050919	Zfp366	DC-SCRIPT|Znf366	zinc finger protein 366	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-148585927-4	chr2	148585833	148586033	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	-86682.0	NM_019761	56488.0	Mm.34663	NM_019761	ENSMUSG00000036992	Nxt1	1110001N02Rik	NTF2-related export protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166460096-4	chr2	166460002	166460202	+	995.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12651.0	NR_015558	319684.0	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-58418508-2	chr10	58418408	58418608	+	586.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359116, intron 9 of 9)	intron (NM_001359116, intron 9 of 9)	24135.0	NM_001346676	110829.0	Mm.57734	NM_026148	ENSMUSG00000019920	Lims1	2310016J22Rik|4921524A02Rik|AI507642|AU021743|AW551584|C430041B13Rik|Lims1l|PINCH|PINCH1	LIM and senescent cell antigen-like domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-95533946-2	chr11	95533846	95534046	+	688.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19381.0	NM_130858	104079.0	Mm.22970	NM_130858	ENSMUSG00000046719	Nxph3	-	neurexophilin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-61013130-8	chr9	61013035	61013235	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3934.0	NR_040767	330956.0	Mm.207985	NR_040767	ENSMUSG00000111290	Gm5122	A430102L10	predicted gene 5122	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88579986-2	chr3	88579887	88580087	+	727.166687	f1_balb.idr|f1_c57bl6.idr	exon (NM_001356316, exon 2 of 6)	exon (NM_001356316, exon 2 of 6)	379.0	NM_025448	66256.0	Mm.7091	NM_025448	ENSMUSG00000041355	Ssr2	1500032E05Rik|AI315033|AU020133|SSR-beta|TLAP|TRAPB|TRAPbeta	signal sequence receptor, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-45288638-4	chr13	45288540	45288740	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-101102.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-119336666-3	chr2	119336567	119336767	+	762.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10470.0	NR_030683	100043609.0	Mm.185068	NR_030683	ENSMUSG00000074912	Gm14207	Dll4	predicted gene 14207	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117837412-4	chr10	117837287	117837487	+	815.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024457, intron 1 of 7)	intron (NM_024457, intron 1 of 7)	8587.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-88069123-4	chr11	88068988	88069188	+	892.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016686, intron 1 of 5)	CpG	809.0	NM_016686	22344.0	Mm.46628	NM_016686	ENSMUSG00000018377	Vezf1	AI848691|AW046909|db1	vascular endothelial zinc finger 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-181014355-2	chr1	181014220	181014420	+	664.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010145, intron 1 of 8)	ORR1B2|LTR|ERVL-MaLR	3249.0	NM_001312918	13849.0	Mm.9075	NM_010145	ENSMUSG00000038776	Ephx1	EH|Eph-1|Eph1|Epxh1|mEH	epoxide hydrolase 1, microsomal	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-56412210-4	chr8	56412100	56412300	+	986.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	72768.0	NR_131020	75123.0	Mm.72666	NR_131020	ENSMUSG00000110310	4930518J21Rik	-	RIKEN cDNA 4930518J21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-40637887-4	chr19	40637756	40637956	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304721, intron 1 of 9)	intron (NM_001304721, intron 1 of 9)	-21914.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	6.25676964198209	5.79124277266661	5.53954873646986	6.84475222244767	6.43305807791544	6.31273998865905	6.27587323743399	6.36634524337137	0.155230294208596	0.559163479818656	0.960321604678676
Merged-chr6-90551440-2	chr6	90551340	90551540	+	863.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027406, intron 1 of 22)	intron (NM_027406, intron 1 of 22)	647.0	NM_027406	107747.0	Mm.30035	NM_027406	ENSMUSG00000030088	Aldh1l1	1810048F20Rik|FDH|Fthfd|Neut2	aldehyde dehydrogenase 1 family, member L1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81017341-2	chr15	81017241	81017441	+	797.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001082536, intron 10 of 13)	intron (NM_001082536, intron 10 of 13)	39576.0	NM_134091	105835.0	Mm.274943	NM_134091	ENSMUSG00000042303	Sgsm3	1810012I01Rik|AI428557|BB175482|Cip85|R75178|RUSC3|Rutbc3	small G protein signaling modulator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-68726771-1	chr17	68726671	68726871	+	607.0	f1_c57bl6.idr	intron (NM_177278, intron 18 of 20)	Lx2|LINE|L1	-110365.0	NM_001206661	622645.0	Mm.86422	NM_001206661	ENSMUSG00000095407	Tmem200c	EG622645|Gm6338	transmembrane protein 200C	protein-coding	-0.664543027923147	-0.651054636905989	-0.655444676145812	0.292300770284149	-0.663693266365073	-0.650068876850928	-0.45175528859257	-0.658254591312759	-2.63575197769654	0.341016142157045	1
Merged-chr10-44636246-2	chr10	44636146	44636346	+	602.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-177498.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-76179402-4	chr5	76179311	76179511	+	834.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4469.0	NM_011626	21982.0	Mm.790	NM_011626	ENSMUSG00000029234	Tmem165	AV026557|Tpardl|Tparl|pFT27	transmembrane protein 165	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-37714083-2	chr4	37713983	37714183	+	813.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3A|LINE|L1	464680.0	NR_151605	102636890.0	Mm.109154	NR_151605	ENSMUSG00000086026	Gm12374	-	predicted gene 12374	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-96285563-4	chr15	96285471	96285671	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1951.0	NM_175251	77044.0	Mm.17166	NM_175251	ENSMUSG00000033237	Arid2	1700124K17Rik|4432409D24Rik|BAF200|zipzap/p200	AT rich interactive domain 2 (ARID, RFX-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-86370990-2	chr6	86370890	86371090	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026506)	promoter-TSS (NM_026506)	-550.0	NM_026506	68011.0	Mm.276802	NM_026506	ENSMUSG00000057278	Snrpg	2810024K17Rik|AL022803|SMG|sm-G|snRNP-G	small nuclear ribonucleoprotein polypeptide G	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-98590131-2	chr13	98590031	98590231	+	710.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47279.0	NM_026685	68344.0	Mm.28766	NM_026685	ENSMUSG00000046082	Tmem174	0610009B10Rik|AA986094	transmembrane protein 174	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-115597788-3	chr8	115597677	115597877	+	765.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	109117.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-33524688-2	chr17	33524588	33524788	+	759.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001329147, intron 1 of 22)	intron (NM_001329147, intron 1 of 22)	603.0	NM_001329147	224697.0	Mm.29304	NM_172619	ENSMUSG00000024299	Adamts10	9430006O18|AW045948|Adam-ts10|Adamts-10|Znmp	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-7314444-3	chr4	7314451	7314651	+	609.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-246137.0	NR_040645	71510.0	Mm.410775	NR_040645	ENSMUSG00000086070	8430436N08Rik	-	RIKEN cDNA 8430436N08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-25516097-2	chr9	25515997	25516197	+	697.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 2 of 7)	intron (NM_026189, intron 2 of 7)	34500.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-35330975-4	chr2	35330864	35331064	+	962.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013515, intron 1 of 6)	intron (NM_013515, intron 1 of 6)	6045.0	NM_013515	13830.0	Mm.295284	NM_013515	ENSMUSG00000026880	Stom	Epb7.2	stomatin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-77543536-3	chr8	77543431	77543631	+	800.216675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5866.0	NM_001081240	102182.0	Mm.197630	NM_178903	ENSMUSG00000037134	Prmt9	AI931714|Prmt10	protein arginine methyltransferase 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-124696197-2	chr2	124696097	124696297	+	582.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42616.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-45976423-2	chr13	45976323	45976523	+	544.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	-11432.0	NM_009124	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122417876-2	chr8	122417776	122417976	+	604.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001310650)	TTS (NM_001310650)	-4144.0	NM_145834	234836.0	Mm.222808	NM_145834	ENSMUSG00000046108	Il17c	IL-17C	interleukin 17C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-89089797-1	chr11	89089697	89089897	+	573.0	f0_c57.idr	intron (NM_001033266, intron 3 of 3)	MLTR14|LTR|ERV1	15956.0	NM_001033266	217071.0	Mm.342127	NM_001033266	ENSMUSG00000072553	Gm525	-	predicted gene 525	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-108716364-4	chr9	108716249	108716449	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008924, intron 2 of 10)	B4A|SINE|B4	24206.0	NM_008924	19087.0	Mm.253102	NM_008924	ENSMUSG00000032601	Prkar2a	1110061A24Rik|AI317181|AI836829|RII(alpha)	protein kinase, cAMP dependent regulatory, type II alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180793669-4	chr1	180793564	180793764	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19941.0	NM_008210	15078.0	Mm.138832	NM_008210	ENSMUSG00000060743	H3f3a	EyeLinc14|H3.3A	H3 histone, family 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-79934042-5	chr15	79933977	79934177	+	837.483337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1431.0	NM_144811	52609.0	Mm.323442	NM_144811	ENSMUSG00000053411	Cbx7	1600014J01Rik|AI851678|D15Ertd417e	chromobox 7	protein-coding	3.46622991655532	2.69013537552679	1.46879747828417	2.73652828663649	2.86855007995146	2.71057494487817	1.75709277009568	3.09054369144847	-0.157657384782365	0.854088409823496	0.998431161219273
Merged-chr5-59532259-2	chr5	59532159	59532359	+	768.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	453743.0	NR_040683	71057.0	Mm.50817	NR_040682	ENSMUSG00000106013	4933402J10Rik	-	RIKEN cDNA 4933402J10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-116194142-2	chr6	116194042	116194242	+	880.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177412)	promoter-TSS (NM_177412)	-768.0	NM_177412	330401.0	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-46832787-2	chr7	46832687	46832887	+	887.625	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13017.0	NM_010699	16828.0	Mm.29324	NM_010699	ENSMUSG00000063229	Ldha	Ldh1|Ldhm|l7R2	lactate dehydrogenase A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-19162205-2	chr3	19162105	19162305	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357689, intron 1 of 6)	intron (NM_001357689, intron 1 of 6)	890.0	NM_028840	74252.0	Mm.200383	NM_028840	ENSMUSG00000027599	Armc1	2310016N05Rik|2900046P06Rik|3110009G21Rik|AA409258|AW048872|Arcp|C330014L16Rik	armadillo repeat containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100269088-2	chr7	100268988	100269188	+	758.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027629, intron 12 of 13)	intron (NM_027629, intron 12 of 13)	4544.0	NR_033563	14777.0	Mm.57225	NR_033563		Gpx2-ps1	AU041318	glutathione peroxidase 2, pseudogene 1	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-88861166-4	chr6	88861068	88861268	+	990.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347327, intron 2 of 7)	ORR1E|LTR|ERVL-MaLR	12876.0	NM_176973	319655.0	Mm.302613	NM_176973	ENSMUSG00000033152	Podxl2	D130074J02Rik|PODLX2	podocalyxin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141301224-4	chr4	141301118	141301318	+	937.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010139)	promoter-TSS (NM_010139)	-3.0	NM_010139	13836.0	Mm.2581	NM_010139	ENSMUSG00000006445	Epha2	AW545284|Eck|Myk2|Sek-2|Sek2	Eph receptor A2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-82867144-2	chr11	82867044	82867244	+	850.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164569, intron 1 of 7)	intron (NM_001164569, intron 1 of 7)	3600.0	NM_001164570	67338.0	Mm.341608	NM_026097	ENSMUSG00000020696	Rffl	1700051E09Rik|4930516L10Rik|BG080975|Carp2	ring finger and FYVE like domain containing protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-173789135-2	chr2	173789035	173789235	+	563.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51564.0	NM_019806	56491.0	Mm.260456	NM_019806	ENSMUSG00000054455	Vapb	AI225786|AI840687|AI848259|D2Abb2e|R75548|VAP33b|Vamp33b	vesicle-associated membrane protein, associated protein B and C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-111010747-2	chr10	111010647	111010847	+	801.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172554)	promoter-TSS (NM_172554)	-681.0	NM_172554	320150.0	Mm.339281	NM_172554	ENSMUSG00000035798	Zdhhc17	A230053P19Rik|BB187739|D130071N24Rik|DHHC-17|Hip14	zinc finger, DHHC domain containing 17	protein-coding	1.36688401771929	1.18468984083893	1.15127522803047	2.04037727512543	1.37824876012876	1.19210433391259	1.15872186866545	2.05222132180277	0.0333446768327941	0.977676652124405	0.998431161219273
Merged-chr7-97154469-2	chr7	97154369	97154569	+	541.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162477, intron 1 of 9)	intron (NM_001162477, intron 1 of 9)	72718.0	NM_010248	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-180120694-2	chr2	180120594	180120794	+	590.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144500, intron 1 of 13)	intron (NM_144500, intron 1 of 13)	1328.0	NM_144500	228983.0	Mm.253578	NM_144500	ENSMUSG00000039050	Osbpl2	C130070J12Rik|ORP-2|Orp2|mKIAA0772	oxysterol binding protein-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71618257-3	chr17	71618192	71618392	+	846.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175639, intron 1 of 17)	ID4_|SINE|ID	2077.0	NM_175639	72515.0	Mm.257762	NM_175639	ENSMUSG00000041057	Wdr43	2610318G08Rik|AU020887|AV024208|Wrd43|mKIAA0007	WD repeat domain 43	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100701515-4	chr11	100701424	100701624	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030150, intron 6 of 12)	intron (NM_030150, intron 6 of 12)	2747.0	NM_030150	80861.0	Mm.271830	NM_030150	ENSMUSG00000017830	Dhx58	B430001I08Rik|D11Lgp2e|LPG2|Lgp2|RLR-3	DEXH (Asp-Glu-X-His) box polypeptide 58	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33776917-3	chr16	33776816	33777016	+	915.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17121.0	NM_010739	17063.0	Mm.3177	NM_010739	ENSMUSG00000022824	Muc13	114/A10|14/A10|AI159736|Lrrp|Ly64|NJ-1	mucin 13, epithelial transmembrane	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-123475769-4	chr9	123475658	123475858	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-2943.0	NM_013860	29806.0	Mm.10987	NM_013860	ENSMUSG00000025239	Limd1	AW822033|D9Ertd192e	LIM domains containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-34198181-4	chr19	34198082	34198282	+	786.016663	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360718, intron 1 of 10)	Lx5c|LINE|L1	5248.0	NM_001360718	76630.0	Mm.130952	NM_029682	ENSMUSG00000024776	Stambpl1	1700095N21Rik|8230401J17Rik|ALMalpha|AMSH-FP	STAM binding protein like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124001107-4	chr5	124001001	124001201	+	996.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145070, intron 27 of 31)	intron (NM_145070, intron 27 of 31)	4249.0	NR_105999	102465625.0		NR_105999	ENSMUSG00000098454	Mir7032	Gm27309|mmu-mir-7032	microRNA 7032	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132898429-3	chr4	132898310	132898510	+	717.450012	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001163792)	TTS (NM_001163792)	-13952.0	NM_133887	100226.0	Mm.28237	NM_133887	ENSMUSG00000028879	Stx12	AI850350|AU041521|Stx13	syntaxin 12	protein-coding	2.24886022145661	2.11400624328007	1.43407084696793	0.789417401741696	1.85754105706243	0.832633676100173	0.811293597656502	0.792439910673457	-1.79356999605389	0.211035114666465	0.700323931057359
Merged-chr11-100330452-2	chr11	100330352	100330552	+	732.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3955.0	NM_010257	14459.0	Mm.4767	NM_010257	ENSMUSG00000017165	Gast	GAS	gastrin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-28635323-1	chr12	28635223	28635423	+	591.0	f0_balb.idr	intron (NM_011300, intron 3 of 6)	intron (NM_011300, intron 3 of 6)	630.0	NM_011300	20115.0	Mm.279839	NM_011300	ENSMUSG00000061477	Rps7	Mtu|Rps7A|S7	ribosomal protein S7	protein-coding	3.92225597650433	4.19995856689884	3.47184907100398	3.16844693516427	4.00294679203029	4.87457499895459	3.05018351290439	3.47853547025423	0.395069540088795	0.479387973039712	0.928092227925527
Merged-chr11-75548545-2	chr11	75548444	75548644	+	816.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199284, intron 5 of 13)	intron (NM_001199284, intron 5 of 13)	-2885.0	NR_039553	100628624.0		NR_039553	ENSMUSG00000093100	Mir3971	mmu-mir-3971|mu-mir-3971	microRNA 3971	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139363197-3	chr5	139363092	139363292	+	644.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_028469, intron 3 of 4)	intron (NM_028469, intron 3 of 4)	6553.0	NR_029768	723898.0		NR_029768	ENSMUSG00000065593	Mir339	Mirn339|mir-339|mmu-mir-339	microRNA 339	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91375147-4	chr16	91375058	91375258	+	963.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347258, intron 1 of 7)	ORR1C2|LTR|ERVL-MaLR	2375.0	NM_001110498	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-64801831-3	chr16	64801728	64801928	+	780.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347245, intron 3 of 8)	ORR1A2|LTR|ERVL-MaLR	-15507.0	NM_028059	72020.0	Mm.25960	NM_028059	ENSMUSG00000047141	Zfp654	1600021C16Rik|1810008K20Rik|433036|Gm5488|Znf654	zinc finger protein 654	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-100059464-4	chr10	100059357	100059557	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347156, intron 2 of 8)	intron (NM_001347156, intron 2 of 8)	43636.0	NM_013598	17311.0	Mm.45124	NM_013598	ENSMUSG00000019966	Kitl	Clo|Con|Gb|Kitlg|Mgf|SCF|SF|SLF|Sl|blz|contrasted	kit ligand	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-32319317-3	chr6	32319237	32319437	+	961.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175750, intron 3 of 31)	intron (NM_175750, intron 3 of 31)	-191804.0	NR_040277	319849.0	Mm.440860	NR_040277	ENSMUSG00000086763	Plxna4os1	B230378P21Rik	plexin A4, opposite strand 1	ncRNA	1.68250489000569	2.16644958624293	2.56901987919802	2.14171962762697	1.69583045126339	1.7178799119281	2.32733395819948	1.19717476122921	-0.982822354789713	0.330374669137077	0.83197671091297
Merged-chr4-102785329-3	chr4	102785235	102785435	+	592.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144906, intron 1 of 23)	intron (NM_144906, intron 1 of 23)	25200.0	NM_001285859	73094.0	Mm.54201	NM_144906	ENSMUSG00000028524	Sgip1	3110007P09Rik|SGIP1alpha|gag	SH3-domain GRB2-like (endophilin) interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-60971465-2	chr8	60971365	60971565	+	737.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007711, intron 1 of 11)	intron (NM_007711, intron 1 of 11)	11846.0	NM_173873	12725.0	Mm.25263	NM_007711	ENSMUSG00000004319	Clcn3	Clc3	chloride channel, voltage-sensitive 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-53628555-1	chr10	53628455	53628655	+	546.0	f1_c57bl6.idr	intron (NM_027830, intron 2 of 13)	intron (NM_027830, intron 2 of 13)	1884.0	NM_027830	71567.0	Mm.278221	NM_027830	ENSMUSG00000058298	Mcm9	9030408O17Rik|Gm235|Mcmdc1	minichromosome maintenance 9 homologous recombination repair factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-116317426-2	chr13	116317326	116317526	+	547.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7738.0	NM_021459	16392.0	Mm.42242	NM_021459	ENSMUSG00000042258	Isl1	-	ISL1 transcription factor, LIM/homeodomain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-111796670-4	chr13	111796562	111796762	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011945, intron 1 of 19)	intron (NM_011945, intron 1 of 19)	12331.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-24323341-2	chr5	24323241	24323441	+	580.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013569, intron 9 of 14)	intron (NM_013569, intron 9 of 14)	6250.0	NM_001294162	16511.0	Mm.6539	NM_013569	ENSMUSG00000038319	Kcnh2	AI326795|ERG1|LQT|Lqt2|M-erg|Merg1|merg1a|merg1b	potassium voltage-gated channel, subfamily H (eag-related), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-55859665-4	chr7	55859579	55859779	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164661, intron 2 of 31)	intron (NM_001164661, intron 2 of 31)	17608.0	NM_001164661	20430.0	Mm.37249	NM_011370	ENSMUSG00000030447	Cyfip1	E030028J09Rik|P140SRA-1|P140sra1|Shyc|Sra-1|Sra1|l(7)1Rl|l71Rl|l7Rl1|mKIAA0068|pl-1	cytoplasmic FMR1 interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-40014813-1	chr4	40014713	40014913	+	573.0	f0_balb.idr	Intergenic	Intergenic	-128452.0	NM_007386	11428.0	Mm.331547	NM_007386	ENSMUSG00000028405	Aco1	Aco-1|Irebp|Irp1	aconitase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-58798201-4	chr15	58798101	58798301	+	810.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175212, intron 1 of 6)	intron (NM_175212, intron 1 of 6)	25226.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101067195-4	chr11	101067113	101067313	+	693.854187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2881.0	NM_013792	27419.0	Mm.95452	NM_013792	ENSMUSG00000001751	Naglu	-	alpha-N-acetylglucosaminidase (Sanfilippo disease IIIB)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-66075959-2	chr5	66075859	66076059	+	879.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_139065, intron 2 of 6)	MIRb|SINE|MIR	22220.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	0.81312990654402	0.14470388756896	0.308174549739416	0.135114951246687	0.494897873509481	0.145926828461108	0.31283592994459	0.429857852251222	-0.279351876441414	0.884449072668506	1
Merged-chr17-71256020-4	chr17	71255884	71256084	+	820.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001357336, exon 6 of 8)	exon (NM_001357336, exon 6 of 8)	51330.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	1.71077869121751	1.70715163562436	1.96828083973584	0.93472702232069	1.7263721615246	0.970769193844354	0.95286279755132	1.82308798673742	-0.620131256762024	0.638428838358965	0.982599433509505
Merged-chr9-43286910-2	chr9	43286810	43287010	+	739.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23853.0	NM_023655	72169.0	Mm.273277	NM_023655	ENSMUSG00000032013	Trim29	1110047J21Rik|2810431N19Rik|4732461M22Rik|AI119726	tripartite motif-containing 29	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-104565719-2	chr11	104565619	104565819	+	690.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010858, intron 2 of 8)	intron (NM_010858, intron 2 of 8)	-3521.0	NR_130177	100415912.0	Mm.446786	NR_130177		Gm11665	Gm11664	predicted gene 11665	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-76899180-4	chr8	76899066	76899266	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028579, intron 1 of 1)	intron (NR_028579, intron 1 of 1)	1455.0	NR_028579	102640923.0	Mm.367571	NR_028579	ENSMUSG00000074235	Gm10649	-	predicted gene 10649	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114895543-2	chr11	114895443	114895643	+	724.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_170758, intron 3 of 6)	ORR1D1|LTR|ERVL-MaLR	5502.0	NM_170758	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-120475384-2	chr14	120475284	120475484	+	692.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3077.0	NM_029519	76108.0	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-154584551-4	chr3	154584482	154584682	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168358, intron 4 of 4)	B4A|SINE|B4	-12129.0	NM_009968	12972.0	Mm.374855	NM_009968	ENSMUSG00000028199	Cryz	Sez9	crystallin, zeta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-126321133-1	chr4	126321033	126321233	+	699.0	f0_c57.idr	TTS (NM_011902)	TTS (NM_011902)	570.0	NM_133883	100206.0	Mm.11285	NM_133883	ENSMUSG00000042558	Adprhl2	AI836109|Arh3	ADP-ribosylhydrolase like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-31033257-4	chr6	31033144	31033344	+	901.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT2B2|LTR|ERVL	29503.0	NR_029744	387222.0		NR_029744	ENSMUSG00000065610	Mir29a	Mirn29a|mir-29a|mmu-mir-29a	microRNA 29a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-132169222-4	chr3	132169084	132169284	+	939.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020265, intron 1 of 3)	intron (NM_020265, intron 1 of 3)	83892.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-20122299-4	chr8	20122274	20122474	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	175058.0	NR_030708	547150.0	Mm.359054	NR_030708	ENSMUSG00000071796	6820431F20Rik	-	cadherin 11 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-53774836-4	chr11	53774725	53774925	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159393, intron 7 of 9)	intron (NM_001159393, intron 7 of 9)	4352.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-83700619-3	chr8	83700499	83700699	+	687.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1420.0	NM_177262	320795.0	Mm.213000	NM_177262	ENSMUSG00000057672	Pkn1	DBK|F730027O18Rik|PAK1|PRK1|Pkn|Prkcl1|Stk3	protein kinase N1	protein-coding	0.00783231191469723	-0.237174967921706	0.200598922690816	0.367007926845101	-0.249441944413969	-0.236205041239679	-0.240524610241608	-0.244201384004049	-3.67686620047112	0.12010470312121	1
Merged-chr10-63245033-2	chr10	63244933	63245133	+	701.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359484, intron 1 of 22)	B3|SINE|B2	1236.0	NM_001359484	67345.0	Mm.234437	NM_026101	ENSMUSG00000020064	Herc4	1700056O17Rik|4921531D01Rik|9530080M15Rik|mKIAA1593	hect domain and RLD 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-12990457-1	chr1	12990357	12990557	+	541.0	f0_balb.idr	exon (NM_172841, exon 1 of 9)	exon (NM_172841, exon 1 of 9)	678.0	NM_172841	240726.0	Mm.24481	NM_172841	ENSMUSG00000025938	Slco5a1	4732454B15|A630033C23Rik|AA407151	solute carrier organic anion transporter family, member 5A1	protein-coding	1.64257484898884	1.12491768067816	0.713778700401912	0.704356748165951	1.43224757017734	1.4237789611306	1.09324138247558	0.706009529712685	0.304322628680319	0.839867481200747	0.998431161219273
Merged-chr7-128463618-2	chr7	128463518	128463718	+	805.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1945.0	NM_001347640	21843.0	Mm.242072	NM_009383	ENSMUSG00000030846	Tial1	5330433G13Rik|AL033329|TIAR|mTIAR	Tia1 cytotoxic granule-associated RNA binding protein-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-137975667-1	chr3	137975567	137975767	+	578.0	f0_balb.idr	intron (NM_011932, intron 1 of 8)	intron (NM_011932, intron 1 of 8)	5882.0	NM_001310753	26377.0	Mm.254835	NM_011932	ENSMUSG00000028159	Dapp1	Bam32	dual adaptor for phosphotyrosine and 3-phosphoinositides 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127538481-3	chr10	127538380	127538580	+	908.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008512, exon 89 of 89)	3' UTR (NM_008512, exon 89 of 89)	-3921.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-67875941-3	chr14	67875843	67876043	+	781.472229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177780, intron 2 of 51)	intron (NM_177780, intron 2 of 51)	-16198.0	NR_105857	102465310.0		NR_105857	ENSMUSG00000098866	Mir6539	Gm27464|mir-6539|mmu-mir-6539	microRNA 6539	ncRNA	0.410297642239171	0.443694265602836	0.432937534641407	0.784269998611095	1.40732816276485	1.39136778890673	0.824917413147889	0.425997675083614	3.07761130232384	0.0868411503472357	0.452746287021785
Merged-chr10-37141796-4	chr10	37141696	37141896	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-2870.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4719246-4	chr16	4719149	4719349	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001290761, exon 1 of 5)	5' UTR (NM_001290761, exon 1 of 5)	107.0	NM_001290763	67824.0	Mm.28451	NM_026393	ENSMUSG00000063445	Nmral1	1110025F24Rik|AI256624	NmrA-like family domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-8928804-4	chr12	8928690	8928890	+	792.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008640, intron 1 of 6)	L1MA6|LINE|L1	7483.0	NM_008640	17775.0	Mm.30071	NM_008640	ENSMUSG00000020585	Laptm4a	AA286466|LAPTM4|MTP|Mtrp|mKIAA0108	lysosomal-associated protein transmembrane 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-63611650-2	chr9	63611550	63611750	+	651.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_151671, intron 1 of 9)	intron (NR_151671, intron 1 of 9)	9004.0	NR_151671	66939.0	Mm.34338	NM_025857	ENSMUSG00000037257	Aagab	2310007F21Rik|p34	alpha- and gamma-adaptin binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-83720481-4	chr7	83720353	83720553	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360088, intron 2 of 18)	intron (NM_001360088, intron 2 of 18)	11945.0	NM_001360087	16170.0	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	3.6358554439075	4.4372480929642	3.7134150673569	4.65628261270711	4.06639655023147	4.35662192773677	3.89873123415473	3.24959024273497	-0.319595021308242	0.511047901851477	0.94512318675548
Merged-chr3-96251932-4	chr3	96251852	96252052	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5252.0	NM_054045	97114.0	Mm.358797	NM_054045	ENSMUSG00000081058	Hist2h3c2	H3-614|H3.2-614|Hist2h3c2-ps|Hist2h3ca1|M32461	histone cluster 2, H3c2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-160060745-2	chr2	160060645	160060845	+	858.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44092.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-156014289-1	chr2	156014189	156014389	+	588.0	f1_balb.idr	intron (NM_025516, intron 7 of 12)	intron (NM_025516, intron 7 of 12)	6261.0	NM_001356413	66366.0	Mm.141276	NM_025516	ENSMUSG00000005881	Ergic3	2310015B14Rik|AV318804|CGI-54|D2Ucla1|NY-BR-84|Sdbcag84	ERGIC and golgi 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-84666092-2	chr17	84665992	84666192	+	804.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_031884, intron 10 of 12)	intron (NM_031884, intron 10 of 12)	-10210.0	NM_001286005	67470.0	Mm.26581	NM_026180	ENSMUSG00000024254	Abcg8	1300003C16Rik|AI114946|sterolin-2	ATP binding cassette subfamily G member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-20114267-2	chr14	20114167	20114367	+	843.6666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31095.0	NM_026209	67509.0	Mm.292423	NM_026209	ENSMUSG00000045107	Saysd1	1810063B07Rik|4930488P03Rik	SAYSVFN motif domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-57585164-4	chr9	57585060	57585260	+	993.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022813, intron 7 of 8)	RSINE1|SINE|B4	-4292.0	NM_027895	71742.0	Mm.155877	NM_027895	ENSMUSG00000032308	Ulk3	1200015E14Rik	unc-51-like kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-24884374-2	chr16	24884274	24884474	+	737.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 9 of 12)	intron (NM_178665, intron 9 of 12)	162519.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-122811018-4	chr6	122810941	122811141	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9143.0	NM_021899	60611.0	Mm.87142	NM_021899	ENSMUSG00000003154	Foxj2	Fhx	forkhead box J2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6907773-4	chr19	6907648	6907848	+	987.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012021, intron 2 of 5)	intron (NM_012021, intron 2 of 5)	-1950.0	NM_001166370	67674.0	Mm.318804	NM_026306	ENSMUSG00000038812	Trmt112	0610038D11Rik|Trm112p	tRNA methyltransferase 11-2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-83322954-3	chr4	83322850	83323050	+	861.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027238, intron 1 of 19)	intron (NM_027238, intron 1 of 19)	1239.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34997855-2	chr17	34997755	34997955	+	720.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_033075, exon 2 of 2)	exon (NM_033075, exon 2 of 2)	2891.0	NM_033075	110956.0	Mm.22506	NM_033075		D17H6S56E-5	G7e	DNA segment, Chr 17, human D6S56E 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-172523999-1	chr1	172523899	172524099	+	560.0	f1_c57bl6.idr	intron (NM_027972, intron 1 of 11)	RMER19B|LTR|ERVK	2869.0	NM_027972	71870.0	Mm.78373	NM_027972	ENSMUSG00000026546	Cfap45	1700028D05Rik|Ccdc19|Nesg1	cilia and flagella associated protein 45	protein-coding	-0.574497556494685	-0.912126659144096	-0.753770558147131	-0.921867980102149	-0.670542751572653	-0.909641955277536	-0.919417005742857	-0.921535887297577	-0.894788140061727	0.762184884914662	1
Merged-chr6-72201018-3	chr6	72200915	72201115	+	730.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34562.0	NM_153778	71093.0	Mm.87449	NM_153778	ENSMUSG00000037621	Atoh8	4933425C05Rik|Hath6|Math6|bHLHa21|okadin	atonal bHLH transcription factor 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-25183505-2	chr17	25183450	25183650	+	870.541626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1011.0	NM_183150	214489.0	Mm.274433	NM_183150	ENSMUSG00000067722	BC003965	Ccsmst1	cDNA sequence BC003965	protein-coding	2.58386904406005	1.13397236318603	1.37272245478426	2.33975602832143	1.27593671656119	1.14111335110824	2.3331170524728	2.93121458967763	0.314023694793226	0.785164867757961	0.998431161219273
Merged-chr1-105781052-3	chr1	105780982	105781182	+	880.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009399, intron 1 of 9)	intron (NM_009399, intron 1 of 9)	359.0	NM_009399	21934.0	Mm.6251	NM_009399	ENSMUSG00000026321	Tnfrsf11a	Ly109|ODFR|OFE|Rank|TRANCE-R|mRANK	tumor necrosis factor receptor superfamily, member 11a, NFKB activator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-64594083-3	chr18	64593964	64594164	+	998.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001488, intron 2 of 27)	MTEa|LTR|ERVL-MaLR	66936.0	NM_001001488	54670.0	Mm.270043	NM_001001488	ENSMUSG00000039529	Atp8b1	AI451886|FIC1|Ic	ATPase, class I, type 8B, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-104373513-1	chr9	104373413	104373613	+	627.0	f1_balb.idr	Intergenic	Intergenic	-35791.0	NM_207668	56318.0	Mm.19941	NM_019807	ENSMUSG00000032561	Acpp	5'-NT|A030005E02Rik|FRAP|Lap|PAP|Ppal	acid phosphatase, prostate	protein-coding	0.744417718580976	0.828413262478477	1.07604982708866	2.43219428964199	1.18718865922949	0.834138115675954	1.65706166792646	2.62852016077314	0.676329340051055	0.618146295043573	0.977658746102398
Merged-chr14-18271146-4	chr14	18271044	18271244	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001316711)	promoter-TSS (NM_001316711)	8.0	NM_023526	69721.0	Mm.25648	NM_023526	ENSMUSG00000021772	Nkiras1	2400004O09Rik|KBRAS1|kappaB-Ras1	NFKB inhibitor interacting Ras-like protein 1	protein-coding	3.37893858520892	3.00689666859152	4.0719925925266	2.56268023143111	2.68486553611274	1.66939566457914	3.61892544201073	3.13234110247272	-0.68185155693727	0.354180403078763	0.853132398390271
Merged-chr12-86888776-5	chr12	86888691	86888891	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CGGG)n|Simple_repeat|Simple_repeat	-3977.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55579112-2	chr14	55579012	55579212	+	704.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011189, intron 1 of 10)	intron (NM_011189, intron 1 of 10)	618.0	NM_011189	19186.0	Mm.830	NM_011189	ENSMUSG00000022216	Psme1	AW413925|PA28a	proteasome (prosome, macropain) activator subunit 1 (PA28 alpha)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124553429-2	chr5	124553329	124553529	+	648.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001190795, intron 1 of 13)	intron (NM_001190795, intron 1 of 13)	565.0	NM_026409	67848.0	Mm.281601	NM_026409	ENSMUSG00000029389	Ddx55	2810021H22Rik|mKIAA1595	DEAD (Asp-Glu-Ala-Asp) box polypeptide 55	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-8674134-4	chr12	8674004	8674204	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001160219)	promoter-TSS (NM_001160219)	-30.0	NM_001160221	80913.0	Mm.341243	NM_030723	ENSMUSG00000020594	Pum2	5730503J23Rik|Pumm2	pumilio RNA-binding family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-21033047-3	chr11	21032942	21033142	+	868.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-58282.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-38640799-3	chr6	38640725	38640925	+	722.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-3586.0	NM_001033171	74253.0	Mm.121859	NM_001033171	ENSMUSG00000071537	Klrg2	2310020F24Rik	killer cell lectin-like receptor subfamily G, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-85207719-3	chr13	85207623	85207823	+	797.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023243, intron 6 of 8)	intron (NM_023243, intron 6 of 8)	18338.0	NM_023243	66671.0	Mm.18474	NM_023243	ENSMUSG00000021548	Ccnh	6330408H09Rik|AI661354|AV102684|AW538719	cyclin H	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-132084481-2	chr2	132084381	132084581	+	781.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_018824, intron 5 of 15)	intron (NM_018824, intron 5 of 15)	-54493.0	NM_175445	215653.0	Mm.204737	NM_175445	ENSMUSG00000027339	Rassf2	3830431H01Rik|9030412M04Rik|AI852669|AW495050	Ras association (RalGDS/AF-6) domain family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-65905780-3	chr3	65905676	65905876	+	916.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52473.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	3.12449037667983	2.69289065059564	3.45248580269934	3.70108500289378	3.07952065085537	2.18305761255828	1.87673453042336	2.98332867499478	-1.14752713811747	0.107110719644199	0.511590133077666
Merged-chr18-34261781-2	chr18	34261681	34261881	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360980, intron 2 of 16)	intron (NM_001360980, intron 2 of 16)	14087.0	NM_001360979	11789.0	Mm.384171	NM_007462	ENSMUSG00000005871	Apc	AI047805|AU020952|AW124434|CC1|Min|mAPC	adenomatosis polyposis coli	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-48602831-1	chr6	48602731	48602931	+	553.0	f1_balb.idr	Intergenic	Intergenic	8948.0	NM_001079904	58887.0	Mm.219183	NM_175099	ENSMUSG00000052751	Repin1	AI425994|Ap4|E430037F08Rik|Zfp-464|Zfp464	replication initiator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-67821040-3	chr5	67820928	67821128	+	931.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038999, intron 1 of 36)	intron (NM_001038999, intron 1 of 36)	26403.0	NM_009727	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-37998062-4	chr1	37997967	37998167	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198303)	promoter-TSS (NM_198303)	57.0	NM_198303	226982.0	Mm.260943	NM_198303	ENSMUSG00000026083	Eif5b	A030003E17Rik|BC018347|IF2	eukaryotic translation initiation factor 5B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-155418134-2	chr1	155418034	155418234	+	749.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011273)	promoter-TSS (NM_011273)	-690.0	NM_011273	19775.0	Mm.266215	NM_011273	ENSMUSG00000026469	Xpr1	Rmc-1|Rmc1|Sxv|Syg1|XR	xenotropic and polytropic retrovirus receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-117832361-4	chr12	117832263	117832463	+	907.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-11498.0	NM_146040	217946.0	Mm.281149	NM_146040	ENSMUSG00000021175	Cdca7l	BC006933|JPO2	cell division cycle associated 7 like	protein-coding	2.45929234696495	3.08701003868229	1.83058712333997	2.90094432500856	2.58748239154629	3.20051559559546	2.56321880905514	3.35866542598865	0.601689964377254	0.415339606294347	0.896676881011847
Merged-chr1-60652765-4	chr1	60652699	60652899	+	920.9464109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-86034.0	NM_001045513	77300.0	Mm.440325	NM_001045513	ENSMUSG00000026014	Raph1	9430025M21Rik|C730009O10Rik|Lpd	Ras association (RalGDS/AF-6) and pleckstrin homology domains 1	protein-coding	0.564730769653142	0.696648422401713	0.241127419199797	0.232313376933841	0.573363595475444	0.254822116287236	1.67673263191397	0.233864337082784	1.8925586184151	0.293390288561999	0.797649214211793
Merged-chr12-76310214-2	chr12	76310114	76310314	+	615.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_138745, intron 22 of 27)	B3A|SINE|B2	-14677.0	NM_001101471	238276.0	Mm.311452	NM_001101471	ENSMUSG00000021057	Akap5	3526401B18Rik|AKAP 150|AKAP-5|AKAP150|BB098886|Gm258|P150	A kinase (PRKA) anchor protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-180041776-3	chr2	180041685	180041885	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178750)	promoter-TSS (NM_178750)	679.0	NM_001289476	26444.0	Mm.21728	NM_011969	ENSMUSG00000027566	Psma7	C6-I	proteasome (prosome, macropain) subunit, alpha type 7	protein-coding	3.84187080663484	3.80248355205556	2.12251604647812	4.15062408169898	4.0300555067782	4.67188477370847	3.78327869616709	4.49068537702555	0.840659762262873	0.120644223535827	0.545125305291058
Merged-chr6-72151491-2	chr6	72151391	72151591	+	661.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001035228, intron 6 of 6)	ID_B1|SINE|B4	-28294.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-116932454-4	chr2	116932364	116932564	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32312.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30693427-4	chr2	30693312	30693512	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15401.0	NR_136917	665635.0	Mm.450149	NR_136917		Gm14486	-	predicted gene 14486	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140110494-4	chr5	140110320	140110520	+	963.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359025, intron 14 of 17)	intron (NM_001359025, intron 14 of 17)	64498.0	NM_001359027	17120.0	Mm.27250	NM_010752	ENSMUSG00000029554	Mad1l1	AI173502|AW550425|Mad1	MAD1 mitotic arrest deficient 1-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-119051934-4	chr10	119051840	119052040	+	876.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1441.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-130790375-4	chr4	130790260	130790460	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2177.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-76909725-3	chr14	76909645	76909845	+	879.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	126872.0	NM_172488	210808.0	Mm.89278	NM_172488	ENSMUSG00000044350	Lacc1	9030625A04Rik	laccase domain containing 1	protein-coding	-1.36015291771705	-1.32842431658676	-1.33874579108173	-1.34722415754512	-1.35969949349639	-1.32618761000664	-1.33640923549635	-0.791042329471244	2.42373733289067	0.484013421080845	1
Merged-chr15-99093455-4	chr15	99093355	99093555	+	990.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5727.0	NM_001024702	239659.0	Mm.309917	NM_001024702	ENSMUSG00000001076	C1ql4	C1qtnf11|CTRP11	complement component 1, q subcomponent-like 4	protein-coding	0.405526350665401	1.11366828136347	0.122052590325174	0.116191082773883	0.27295302933196	0.680977931885694	0.123720576129331	0.117218121772597	-1.16445667508749	0.55491020752978	1
Merged-chr4-84079101-3	chr4	84079002	84079202	+	673.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34223.0	NR_130998	78238.0	Mm.243903	NR_130998	ENSMUSG00000085217	6030471H07Rik	-	RIKEN cDNA 6030471H07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-26793204-2	chr10	26793104	26793304	+	607.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_176837, intron 1 of 14)	intron (NM_176837, intron 1 of 14)	20692.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3660606-1	chr4	3660506	3660706	+	974.0	f1_c57bl6.idr	intron (NR_040643, intron 3 of 3)	L1_Mus2|LINE|L1	4100.0	NR_040643	70143.0	Mm.417835	NR_040643	ENSMUSG00000085394	2210414B05Rik	-	RIKEN cDNA 2210414B05 gene	ncRNA	-0.973751987129437	-1.32050219810158	-1.33037402876891	-1.18315408055446	-1.34982315712777	-1.31836293121464	-1.32813926269019	-1.33703153448275	-2.1786833831128	0.521980837664253	1
Merged-chr6-66849111-4	chr6	66849003	66849203	+	975.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43771.0	NM_001166720	546903.0	Mm.484975	NM_001166720	ENSMUSG00000093755	Vmn1r39	EG546903|Gm5993	vomeronasal 1 receptor 39	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-23843973-3	chr1	23843887	23844087	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_110972)	TTS (NR_110972)	65749.0	NR_110972	98366.0	Mm.329963	NM_028534	ENSMUSG00000026155	Smap1	1700056O10Rik|4921514B13Rik|4921525H11Rik|AI462175	small ArfGAP 1	protein-coding	3.82759112396938	3.21060482211454	3.54462952365963	3.17417879716086	2.03715905478127	2.65389692738407	2.23055705817286	1.44514569252527	-2.46110285158435	0.000824916213923118	0.0165507437034274
Merged-chr18-12644379-4	chr18	12644275	12644475	+	839.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028341, intron 1 of 13)	CpG	842.0	NM_028341	72747.0	Mm.52526	NM_028341	ENSMUSG00000024424	Ttc39c	1700008N02Rik|2810439F02Rik	tetratricopeptide repeat domain 39C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-120559008-3	chr2	120558904	120559104	+	992.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011743, intron 1 of 21)	ORR1C2|LTR|ERVL-MaLR	4855.0	NM_011743	20402.0	Mm.485295	NM_011743	ENSMUSG00000027288	Zfp106	Cd-1|D2Dcr28|EyeLinc12|H3a|Sh3bp3|Znf106|sirm|zfp-106	zinc finger protein 106	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-5640350-2	chr8	5640250	5640450	+	580.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-535063.0	NM_011388	20494.0	Mm.3500	NM_011388	ENSMUSG00000023073	Slc10a2	9130221J18Rik|AI605518|ASBT|IBAT|ISBT	solute carrier family 10, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-178492662-3	chr1	178492578	178492778	+	876.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36447.0	NM_001161665	269152.0	Mm.129727	NM_177724	ENSMUSG00000026494	Kif26b	4832420M10|BC056349|D230039L06Rik	kinesin family member 26B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-150874736-4	chr2	150874639	150874839	+	987.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151505, intron 1 of 12)	intron (NR_151505, intron 1 of 12)	29992.0	NM_024465	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97399604-2	chr11	97399504	97399704	+	701.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	37053.0	NM_138657	192157.0	Mm.34339	NM_138657	ENSMUSG00000038485	Socs7	2310063P06Rik|C85125|Nap4	suppressor of cytokine signaling 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-122970414-4	chr7	122970331	122970531	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011247)	promoter-TSS (NM_011247)	28.0	NR_045614	73951.0	Mm.389936	NR_045614		4930413G21Rik	-	RIKEN cDNA 4930413G21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-91683064-1	chr3	91682964	91683164	+	690.0	f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	-331519.0	NM_207247	242100.0	Mm.297406	NM_207247	ENSMUSG00000042244	Pglyrp3	Gm420	peptidoglycan recognition protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35752349-2	chr17	35752207	35752407	+	954.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20143.0	NR_045459	74601.0	Mm.410840	NR_045459	ENSMUSG00000092171	4833427F10Rik	-	RIKEN cDNA 4833427F10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-56028678-4	chr16	56028614	56028814	+	884.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356449, intron 1 of 5)	intron (NM_001356449, intron 1 of 5)	1003.0	NM_001356449	76302.0	Mm.310642	NM_001024622	ENSMUSG00000071533	Pcnp	1110018D06Rik|AI647035	PEST proteolytic signal containing nuclear protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-95832089-6	chr11	95832044	95832244	+	921.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_153104)	TTS (NM_153104)	7644.0	NM_153104	237928.0	Mm.133075	NM_153104	ENSMUSG00000050860	Phospho1	D11Moh36|Phospo1	phosphatase, orphan 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135314015-4	chr4	135313924	135314124	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39190.0	NM_016799	51796.0	Mm.1963	NM_016799	ENSMUSG00000028809	Srrm1	AA407769|POP101|Srm160	serine/arginine repetitive matrix 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43982540-4	chr4	43982441	43982641	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001002787)	promoter-TSS (NM_001002787)	-963.0	NM_001002787	442829.0	Mm.348215	NM_001002787	ENSMUSG00000070999	Ccin	4933417A14Rik	calicin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-30931176-2	chr1	30931076	30931276	+	694.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR33C|LTR|ERVL	18534.0	NR_002688	433406.0	Mm.389003	NR_002688		Gm13363	-	predicted gene 13363	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-24357534-3	chr11	24357412	24357612	+	943.64447	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-124397.0	NR_045857	71316.0	Mm.79162	NR_045857	ENSMUSG00000086892	4933430M04Rik	-	RIKEN cDNA 4933430M04 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126883810-2	chr7	126883710	126883910	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163774, intron 1 of 18)	intron (NM_001163774, intron 1 of 18)	1157.0	NM_001163775	381921.0	Mm.259634	NM_001163774	ENSMUSG00000059981	Taok2	1110033K02Rik|B230344N16|MAP3K17|PSK|PSK1|TAO1|TAO2|mKIAA0881	TAO kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-37580103-4	chr16	37579991	37580191	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013547)	promoter-TSS (NM_013547)	-62.0	NR_027778	15233.0	Mm.157442	NM_013547	ENSMUSG00000022821	Hgd	Hgo|aku	homogentisate 1, 2-dioxygenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-110109389-2	chr5	110109318	110109518	+	890.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163996)	promoter-TSS (NM_001163996)	-674.0	NM_001163996	675812.0	Mm.442122	NM_001163996	ENSMUSG00000023284	Zfp605	A830023I12Rik	zinc finger protein 605	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-35252624-4	chr6	35252506	35252706	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015608)	promoter-TSS (NR_015608)	-93.0	NR_015608	67705.0	Mm.228046	NR_015608	ENSMUSG00000073155	1810058I24Rik	AI414869|AI848234	RIKEN cDNA 1810058I24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122050567-4	chr5	122050472	122050672	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001312908)	promoter-TSS (NM_001312908)	-721.0	NM_001312908	13048.0	Mm.156172	NM_007804	ENSMUSG00000042589	Cux2	1700051K22Rik|Cutl2|Cux-2	cut-like homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6908395-4	chr19	6908335	6908535	+	870.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012021, intron 1 of 5)	intron (NM_012021, intron 1 of 5)	-1263.0	NM_001166370	67674.0	Mm.318804	NM_026306	ENSMUSG00000038812	Trmt112	0610038D11Rik|Trm112p	tRNA methyltransferase 11-2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-24074572-3	chr18	24074483	24074683	+	785.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47236.0	NM_172625	225280.0	Mm.258973	NM_172625	ENSMUSG00000047989	Ino80c	D030070L09Rik	INO80 complex subunit C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-52014122-6	chr14	52014064	52014264	+	805.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027248, intron 1 of 4)	intron (NM_027248, intron 1 of 4)	394.0	NM_001253695	69890.0	Mm.475652	NM_027248	ENSMUSG00000049295	Zfp219	2010302A17Rik|Znf219	zinc finger protein 219	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-5524775-2	chr11	5524675	5524875	+	570.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001271730, exon 6 of 6)	exon (NM_001271730, exon 6 of 6)	4134.0	NM_001271730	22433.0	Mm.469937	NM_013842	ENSMUSG00000020484	Xbp1	D11Ertd39e|TREB-5|TREB5|XBP-1	X-box binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-133988662-2	chr2	133988562	133988762	+	811.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5b|LINE|L1	423954.0	NR_037273	100526500.0		NR_037273	ENSMUSG00000093338	Mir3090	mmu-mir-3090	microRNA 3090	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-155622323-2	chr4	155622223	155622423	+	754.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177186, exon 9 of 9)	3' UTR (NM_177186, exon 9 of 9)	2432.0	NR_040441	100502734.0	Mm.306018	NR_040441	ENSMUSG00000086682	Gm16023	-	predicted gene 16023	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-43890398-3	chr5	43890341	43890541	+	645.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007646, intron 1 of 7)	intron (NM_007646, intron 1 of 7)	21632.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-55086578-3	chr1	55086507	55086707	+	895.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356512, intron 2 of 11)	intron (NM_001356512, intron 2 of 11)	1325.0	NM_010477	15510.0	Mm.1777	NM_010477	ENSMUSG00000025980	Hspd1	60kDa|CPN60|HSP-60|HSP-65|Hsp60	heat shock protein 1 (chaperonin)	protein-coding	0.151294372850432	0.207514573981812	1.70174189748402	0.175862569921242	0.155048484058114	0.21136983515379	1.94558141576519	0.178360844637526	0.420619613614572	0.897943781436586	0.998431161219273
Merged-chr8-105546663-3	chr8	105546552	105546752	+	665.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013477, intron 1 of 7)	intron (NM_013477, intron 1 of 7)	19412.0	NM_013477	11972.0	Mm.17708	NM_013477	ENSMUSG00000013160	Atp6v0d1	AI267038|Ac39|Atp6d|P39|VATX|Vma6	ATPase, H+ transporting, lysosomal V0 subunit D1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-18453523-2	chr10	18453423	18453623	+	638.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173390, intron 1 of 6)	intron (NM_173390, intron 1 of 6)	-16458.0	NM_001163592	215819.0	Mm.297971	NM_173390	ENSMUSG00000039835	Nhsl1	5730409E15Rik|A630035H13Rik|A730096F01|BC013565|D10Bwg0940e|mKIAA1357	NHS-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-34542427-2	chr5	34542327	34542527	+	911.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145858)	promoter-TSS (NM_001145858)	-938.0	NM_001145858	24055.0	Mm.5012	NM_011893	ENSMUSG00000054520	Sh3bp2	3BP2	SH3-domain binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-90177673-4	chr16	90177567	90177767	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35430.0	NR_033476	100038709.0	Mm.484070	NR_033476		Gm10789	-	predicted gene 10789	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-100612651-2	chr15	100612563	100612763	+	857.7999880000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	2447.0	NR_045701	78445.0	Mm.44383	NR_045701	ENSMUSG00000097093	C330013E15Rik	-	RIKEN cDNA C330013E15 gene	ncRNA	2.22892360204905	1.96773685017647	1.28268769867554	1.72123298254762	1.20931851094449	1.32845016715921	2.21663131832481	1.25816514046922	-0.76823543064715	0.492749770795561	0.935679785535167
Merged-chr15-72808432-2	chr15	72808332	72808532	+	601.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_002864, exon 1 of 1)	non-coding (NR_002864, exon 1 of 1)	1892.0	NR_002864	353342.0	Mm.440245	NR_002864	ENSMUSG00000106847	Peg13	-	paternally expressed 13	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-133549003-7	chr3	133548934	133549134	+	853.119019	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-4644.0	NM_001346736	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-51405340-4	chr10	51405262	51405462	+	915.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-75250.0	NM_008147	14727.0	Mm.439661	NM_008147	ENSMUSG00000112023	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44005089-4	chr7	44004972	44005172	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7606.0	NM_010644	16618.0	Mm.439663	NM_010644	ENSMUSG00000053719	Klk1b26	Egfbp2|Klk26|PRECE-2|mGK-26|mGK26	kallikrein 1-related petidase b26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95677751-2	chr3	95677651	95677851	+	670.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301705, intron 15 of 17)	intron (NM_001301705, intron 15 of 17)	10166.0	NM_144899	229595.0	Mm.490574	NM_144899	ENSMUSG00000015850	Adamtsl4	ADAMTSL-4|Tsrc1	ADAMTS-like 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-9179381-2	chr13	9179281	9179481	+	932.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	85500.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-55113680-4	chr11	55113578	55113778	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010299)	TTS (NM_010299)	15693.0	NM_010299	14667.0	Mm.287807	NM_010299	ENSMUSG00000000594	Gm2a	AA408702|AW215435|GM2-AP|SAP-3	GM2 ganglioside activator protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-78527074-2	chr14	78526974	78527174	+	635.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164503, intron 1 of 11)	intron (NM_001164503, intron 1 of 11)	-4372.0	NM_001346784	219181.0	Mm.89413	NM_001164503	ENSMUSG00000022016	Akap11	6330501D17Rik|AKAP220|Gm80|PRKA11|mKIAA0629	A kinase (PRKA) anchor protein 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-8911696-4	chr4	8911643	8911843	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GC_rich|Low_complexity|Low_complexity	160419.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-32379000-2	chr18	32378897	32379097	+	582.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045403)	promoter-TSS (NR_045403)	-713.0	NR_045403	402767.0	Mm.385109	NR_045403	ENSMUSG00000097413	A830052D11Rik	-	RIKEN cDNA A830052D11 gene	ncRNA	1.31403023575653	1.63625413773567	1.84014988464416	1.78394476527246	0.961406529798779	2.240431942335	1.00506097120298	1.79390099381292	-0.0736272892980199	0.951801186102042	0.998431161219273
Merged-chr5-112247105-2	chr5	112247005	112247205	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021351, intron 5 of 5)	intron (NM_021351, intron 5 of 5)	5413.0	NM_001312884	12959.0	Mm.40324	NM_021351	ENSMUSG00000066975	Cryba4	-	crystallin, beta A4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-97536831-3	chr16	97536732	97536932	+	721.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013606, intron 1 of 13)	RMER17C|LTR|ERVK	749.0	NM_013606	17858.0	Mm.14157	NM_013606	ENSMUSG00000023341	Mx2	AI528743|Mx-2	MX dynamin-like GTPase 2	protein-coding	0.298247147057724	0.328679044681479	1.19060739420479	0.311192133181422	0.300189902978265	0.330871785724973	0.987865714160475	1.23592461974745	0.829025131216225	0.670707395463479	1
Merged-chr8-84911692-1	chr8	84911592	84911792	+	542.0	f1_balb.idr	TTS (NM_019945)	TTS (NM_019945)	-1643.0	NR_103491	100503676.0	Mm.437155	NR_103491	ENSMUSG00000003812	Gm38426	-	predicted gene, 38426	ncRNA	1.4245243361439	1.41608166576909	0.66699081262211	1.42136704014236	0.639569667008886	0.68440949161808	1.78133441354867	0.657749424088642	-0.736430362862491	0.643384700236016	0.982936710538843
Merged-chr7-43994989-4	chr7	43994903	43995103	+	997.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010640)	promoter-TSS (NM_010640)	-874.0	NM_010640	16613.0	Mm.443378	NM_010640	ENSMUSG00000044485	Klk1b11	Klk11|mGK-11	kallikrein 1-related peptidase b11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-74260562-3	chr5	74260470	74260670	+	994.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114660, intron 5 of 8)	intron (NM_001114660, intron 5 of 8)	65244.0	NM_026878	68939.0	Mm.293316	NM_026878	ENSMUSG00000049907	Rasl11b	1190017B18Rik	RAS-like, family 11, member B	protein-coding	-0.0566372397089966	-0.0407069486180378	-0.0459263621113923	-0.049952899749119	0.423570464830823	0.458793732569622	0.530594443525414	-0.0492494855169113	3.95468515511732	0.0749258302229967	1
Merged-chr2-91727165-4	chr2	91727003	91727203	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-3035.0	NM_172669	228361.0	Mm.436667	NM_172669	ENSMUSG00000040506	Ambra1	2310079H06Rik|A130023A14|AA474864|AV021921|D030051N19Rik|mKIAA1736	autophagy/beclin 1 regulator 1	protein-coding	2.54725094099898	2.68438465364744	1.30719371955673	2.60538521646983	1.82503621433004	2.70482409988918	1.31521797751473	2.61920720556799	-0.324106896397213	0.745244411200525	0.998431161219273
Merged-chr15-102617818-4	chr15	102617689	102617889	+	931.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310067, intron 1 of 11)	intron (NM_001310067, intron 1 of 11)	7675.0	NM_001310070	223922.0	Mm.208714	NM_146065	ENSMUSG00000099083	Atf7	1110012F10Rik|9430065F09Rik|AI549878|C130020M04Rik	activating transcription factor 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-73010216-4	chr6	73010096	73010296	+	855.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51448.0	NM_001190327	19240.0	Mm.3532	NM_025284	ENSMUSG00000079523	Tmsb10	Ptmb10|Tb10	thymosin, beta 10	protein-coding	2.88557094105602	3.12010398724122	3.9114604270752	2.93393190666391	2.99933567044634	3.69349885995269	3.57888675787962	3.14812550114033	0.151853968385596	0.800569826135499	0.998431161219273
Merged-chr5-30961525-7	chr5	30961416	30961616	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER21C|LTR|ERVL	-1189.0	NM_016703	50907.0	Mm.272414	NM_016703	ENSMUSG00000045302	Preb	C85705	prolactin regulatory element binding	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-22847487-2	chr14	22847387	22847587	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028275, intron 6 of 6)	intron (NM_028275, intron 6 of 6)	247084.0	NR_033550	791307.0	Mm.364384	NR_033550	ENSMUSG00000068680	Gm10248	-	predicted gene 10248	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-31926785-4	chr16	31926699	31926899	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MERV1_LTR|LTR|ERV1	-7052.0	NM_172822	239827.0	Mm.440388	NM_172822	ENSMUSG00000045625	Pigz	F630022B06Rik	phosphatidylinositol glycan anchor biosynthesis, class Z	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-155159213-3	chr1	155159130	155159330	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021433, intron 1 of 7)	CpG	527.0	NM_021433	58244.0	Mm.66264	NM_021433	ENSMUSG00000026470	Stx6	2310039E05Rik|2410005I16Rik|AA437559|AI415714|AI845861	syntaxin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-116123041-4	chr6	116122920	116123120	+	986.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177412, intron 3 of 5)	MERVL_2A-int|LTR|ERVL	70354.0	NM_177412	330401.0	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-101842096-4	chr13	101841954	101842154	+	878.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73837.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117435599-4	chr10	117435479	117435679	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11856.0	NR_152734	102634600.0	Mm.399106	NR_152734	ENSMUSG00000112344	Gm32141	-	predicted gene, 32141	ncRNA	6.84351248014529	6.21175485707416	6.48165925796528	6.38622341656079	6.60549262692344	6.30920605433222	6.18061797986143	6.44007168191736	-0.118695795743406	0.579615259585857	0.965985075107763
Merged-chr1-191023334-4	chr1	191023241	191023441	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081259, intron 1 of 9)	L2b|LINE|L2	-2010.0	NR_027298	100125339.0	Mm.472263	NR_027298	ENSMUSG00000097845	A230020J21Rik	-	RIKEN cDNA A230020J21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-23688088-2	chr13	23687988	23688188	+	663.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_023422, intron 1 of 1)	intron (NM_023422, intron 1 of 1)	3889.0	NM_023422	68024.0	Mm.261676	NM_023422	ENSMUSG00000018102	Hist1h2bc	2610022J01Rik|H2bfs|R74621	histone cluster 1, H2bc	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-86924019-4	chr12	86923925	86924125	+	818.766663	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23016.0	NM_001289431	217732.0	Mm.22337	NM_173735	ENSMUSG00000034157	Cipc	2310044G17Rik|AI842544|AI853744|Kiaa1737|mKIAA1737	CLOCK interacting protein, circadian	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101299032-2	chr7	101298932	101299132	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001111111, exon 3 of 18)	exon (NM_001111111, exon 3 of 18)	3056.0	NM_001111111	73683.0	Mm.275744	NM_001111111	ENSMUSG00000047767	Atg16l2	2410118P20Rik	autophagy related 16-like 2 (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-155472894-4	chr2	155472797	155472997	+	979.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32114.0	NM_019825	56406.0	Mm.27592	NM_019825	ENSMUSG00000038369	Ncoa6	AIB3|ASC-2|ASC2|NRC|Ncoa7|PRIP|RAP250|mKIAA0181	nuclear receptor coactivator 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-54526291-1	chr4	54526191	54526391	+	683.0	f0_balb.idr	Intergenic	Intergenic	-421654.0	NM_172867	242466.0	Mm.102904	NM_172867	ENSMUSG00000060206	Zfp462	6030417H05|9430078C22Rik|Gt4-2|Zfpip	zinc finger protein 462	protein-coding	0.747572250579959	1.14746007862881	0.767344324803349	0.759900399889104	1.35993222653917	1.55117005850447	1.89615080096111	0.761199913023085	3.42888391915461	0.0372591684973076	0.274658387744709
Merged-chr10-42003782-3	chr10	42003657	42003857	+	940.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034858, intron 3 of 17)	CT-rich|Low_complexity|Low_complexity	14625.0	NM_001034858	213402.0	Mm.211320	NM_001034858	ENSMUSG00000071324	Armc2	2610018I05Rik	armadillo repeat containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-17907058-4	chr11	17906965	17907165	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46810.0	NM_026576	68145.0	Mm.178684	NM_026576	ENSMUSG00000016984	Etaa1	5730466H23Rik|AA672646	Ewing tumor-associated antigen 1	protein-coding	4.90283737667938	5.48214705884369	4.90112377813641	4.39549439958177	5.08722746151502	5.71422650078508	5.47681345243928	4.66703358194729	0.373356651854191	0.289635164996257	0.7950309994885
Merged-chr11-102925189-4	chr11	102925086	102925286	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_197959)	promoter-TSS (NM_197959)	-62.0	NM_197959	70218.0	Mm.32084	NM_197959	ENSMUSG00000051378	Kif18b	3000004C01Rik	kinesin family member 18B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-73912439-2	chr2	73912339	73912539	+	913.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-1113.0	NM_001301722	228033.0	Mm.2966	NM_175015	ENSMUSG00000018770	Atp5g3	6030447M23	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-34421423-2	chr7	34421323	34421523	+	787.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-31718.0	NM_025948	67070.0	Mm.276503	NM_025948	ENSMUSG00000066568	Lsm14a	2700023B17Rik|AA407828|AU017544|Tral|mRAP55A	LSM14A mRNA processing body assembly factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-40946989-2	chr3	40946889	40947089	+	763.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3642.0	NM_001040399	214048.0	Mm.46782	NM_027663	ENSMUSG00000025762	Larp1b	1700108L22Rik|4933421B21Rik|AA690246|Larp2	La ribonucleoprotein domain family, member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-111014379-3	chr7	111014284	111014484	+	810.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14567.0	NM_009431	22083.0	Mm.255858	NM_009431	ENSMUSG00000005609	Ctr9	AA409336|Sh2bp1|Tsbp|Tsp|mKIAA0155	CTR9 homolog, Paf1/RNA polymerase II complex component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-160361673-4	chr2	160361595	160361795	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5370.0	NM_010658	16658.0	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-90592973-3	chr1	90592896	90593096	+	820.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10429.0	NM_133805	108679.0	Mm.119177	NM_133805	ENSMUSG00000034432	Cops8	9430009J09Rik|AA408242|Csn8|Sgn8	COP9 signalosome subunit 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-20801764-4	chr18	20801669	20801869	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55365.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-64609124-4	chr17	64609048	64609248	+	991.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008549, intron 1 of 21)	intron (NM_008549, intron 1 of 21)	7499.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96645491-2	chr3	96645351	96645551	+	674.333313	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302471)	promoter-TSS (NM_001302471)	-133.0	NM_001302471	213119.0	Mm.32741	NM_001081053	ENSMUSG00000090210	Itga10	A630048L14	integrin, alpha 10	protein-coding	-1.84456824087626	-1.81369603968745	-1.82303204814395	-1.83070092346192	-1.84240106943552	-1.51787681909439	-1.82091858046888	-1.82932819844659	1.64481029852639	0.639921510788462	1
Merged-chr8-109609222-2	chr8	109609122	109609322	+	630.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020046)	promoter-TSS (NM_020046)	-549.0	NM_020046	56749.0	Mm.23894	NM_020046	ENSMUSG00000031730	Dhodh	2810417D19Rik|AI834883	dihydroorotate dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141645256-2	chr4	141645148	141645348	+	794.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347237, intron 1 of 18)	MIR3|SINE|MIR	18867.0	NM_001347237	69582.0	Mm.33220	NM_001033150	ENSMUSG00000028917	Plekhm2	2310034J19Rik|AI854247|mKIAA0842	pleckstrin homology domain containing, family M (with RUN domain) member 2	protein-coding	3.02898711562959	3.33252707028268	1.34167211186054	2.60040277937613	2.15987782527901	2.57094984885533	1.85442673692948	1.79546261993809	-1.31065495575357	0.146849536005232	0.596984662183454
Merged-chr4-106980744-3	chr4	106980677	106980877	+	902.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355532, intron 1 of 14)	intron (NM_001355532, intron 1 of 14)	57592.0	NM_001355532	72475.0	Mm.195635	NM_023672	ENSMUSG00000061887	Ssbp3	2610021L12Rik|2610200M23Rik|5730488C10Rik|AI854733|AW551939|LAST|SSDP1	single-stranded DNA binding protein 3	protein-coding	2.80215857293704	1.3651056956206	2.72914575386246	2.95481647860675	2.24367743386843	1.8913843315245	1.33540915266699	2.82751540526959	-0.829313627069093	0.394939516451288	0.882837719236596
Merged-chr11-60775108-4	chr11	60775016	60775216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009410, intron 1 of 18)	intron (NM_009410, intron 1 of 18)	2249.0	NM_009410	21975.0	Mm.10708	NM_009410	ENSMUSG00000002814	Top3a	-	topoisomerase (DNA) III alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-67610938-4	chr18	67610831	67611031	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	30424.0	NM_001357523	225659.0	Mm.111928	NM_001081073	ENSMUSG00000073542	Cep76	6230425F05Rik|9630013E05	centrosomal protein 76	protein-coding	1.88685507953413	1.44364896931549	2.37380417041421	1.13432740973943	1.78382875604209	2.73034044489585	1.41027817759747	2.22187511626637	0.841959552160117	0.431018869001106	0.904679012727573
Merged-chr11-96871630-2	chr11	96871530	96871730	+	777.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21237.0	NR_029562	387170.0		NR_029562	ENSMUSG00000065515	Mir152	Mirn152|mir-152|mmu-mir-152	microRNA 152	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-25578647-2	chr2	25578547	25578747	+	682.333374	f1_balb.idr|f1_c57bl6.idr	exon (NM_001005424, exon 1 of 1)	exon (NM_001005424, exon 1 of 1)	1452.0	NM_001005424	381353.0	Mm.379511	NM_001005424	ENSMUSG00000029419	Gm996	Ajm1	predicted gene 996	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70551993-3	chr8	70551874	70552074	+	998.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007924, intron 1 of 11)	intron (NM_007924, intron 1 of 11)	12299.0	NM_007924	13716.0	Mm.271973	NM_007924	ENSMUSG00000070002	Ell	Ell1|Men	elongation factor RNA polymerase II	protein-coding	2.5082526812555	1.79195778806808	1.96243756119373	1.90165743648005	3.58647336683071	2.97153594216132	2.63781056570962	3.75665572354952	2.36776586035732	0.00193118392714903	0.0324211913590495
Merged-chr7-142390387-4	chr7	142390255	142390455	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-2485.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	3.96472882595057	4.30221998881521	3.91933930627801	3.74237029199478	3.64930963830196	4.58918759585216	3.34407249064117	3.89740737969129	-0.0656401092932247	0.891744851742935	0.998431161219273
Merged-chr12-35011693-3	chr12	35011597	35011797	+	941.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26936.0	NM_029294	75456.0	Mm.79179	NM_029294	ENSMUSG00000092305	Prps1l1	1700011K15Rik	phosphoribosyl pyrophosphate synthetase 1-like 1	protein-coding	-0.881908147684278	-0.869941168493601	-0.703358843262462	-0.358550036142699	-0.739325118381678	-0.867300771497828	-0.875617774813938	-0.877996941354858	-1.98751386694849	0.487340719020166	1
Merged-chr9-47655068-3	chr9	47654967	47655167	+	827.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	124715.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	0.757546962560931	1.48435201844546	0.469897615025556	0.461866955982457	0.890741965336475	1.17900142292856	0.679061983123814	0.463276132495926	-0.224500081679673	0.891608449033968	0.998431161219273
Merged-chr3-79161593-3	chr3	79161518	79161718	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15743.0	NM_001099624	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-34043267-4	chr15	34043176	34043376	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39443.0	NM_001357926	67154.0	Mm.130883	NM_026002	ENSMUSG00000022255	Mtdh	2610103J23Rik|3D3|3D3/Lyric|AEG-1|AV353288|D8Bwg1112e|Lyric	metadherin	protein-coding	3.33849805034291	2.27938977152673	3.29655191884569	1.45108455968172	2.84105041463852	3.19087714115654	3.24794153267706	1.95407752336977	0.145848845443205	0.86159500415249	0.998431161219273
Merged-chr4-141993314-2	chr4	141993214	141993414	+	677.3000490000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_177868, intron 2 of 31)	intron (NM_177868, intron 2 of 31)	10322.0	NR_040672	545691.0	Mm.332015	NR_040672	ENSMUSG00000085424	Fhad1os1	Gm13037	forkhead-associated (FHA) phosphopeptide binding domain 1, opposite strand 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-11836931-3	chr11	11836885	11837085	+	622.666687	f0_balb.idr|f1_balb.idr	intron (NM_016672, intron 8 of 14)	intron (NM_016672, intron 8 of 14)	-28023.0	NM_001163360	60530.0	Mm.236114	NM_021891	ENSMUSG00000035455	Fignl1	-	fidgetin-like 1	protein-coding	-1.04070425923181	-1.15762465100231	-1.16825675953099	-1.17695798932007	-1.17938349655482	-0.820737417783751	-1.16584988320928	-1.01383418960365	1.49382335983646	0.625380745079162	1
Merged-chr13-113620891-1	chr13	113620791	113620991	+	549.0	f1_balb.idr	Intergenic	RCHARR1|DNA|hAT-Charlie	-2327.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-75090599-2	chr8	75090499	75090699	+	886.125	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3019.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-135505664-2	chr3	135505564	135505764	+	887.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_027288, intron 1 of 16)	intron (NM_027288, intron 1 of 16)	20053.0	NM_027288	110173.0	Mm.280536	NM_027288	ENSMUSG00000028164	Manba	2410030O07Rik|B930014J03Rik|Bmn	mannosidase, beta A, lysosomal	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-84975437-2	chr4	84975310	84975510	+	680.7023929999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_175275, intron 7 of 25)	Lx8b|LINE|L1	91101.0	NM_177385	338349.0	Mm.440562	NM_175275	ENSMUSG00000038070	Cntln	AI448092|B430108F07Rik|D530005L17Rik	centlein, centrosomal protein	protein-coding	0.69504722255228	0.63043434803723	0.371716431541261	0.361911186855526	0.347731093048292	1.59503419355522	1.42584799987366	0.363637390867349	2.61147947011233	0.140466544665549	0.585252964543454
Merged-chr12-16990775-2	chr12	16990675	16990875	+	712.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172574, intron 6 of 6)	intron (NM_172574, intron 6 of 6)	9343.0	NM_172574	217430.0	Mm.379451	NM_172574	ENSMUSG00000045679	Pqlc3	C78076|E030024M05Rik	PQ loop repeat containing	protein-coding	1.36201238289284	0.238557859407746	0.22952858327666	0.222477589605197	0.772119467194474	0.812707121767345	0.231530486766885	0.223714878459443	-0.480151902301254	0.810339985247122	1
Merged-chr4-62480615-5	chr4	62480510	62480710	+	958.2999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138653, intron 1 of 6)	intron (NM_138653, intron 1 of 6)	543.0	NM_138653	192120.0	Mm.29808	NM_138653	ENSMUSG00000028392	Bspry	-	B-box and SPRY domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-39572353-3	chr18	39572270	39572470	+	976.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-85125.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-65497653-3	chr18	65497600	65497800	+	956.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_105742, intron 3 of 6)	intron (NR_105742, intron 3 of 6)	66703.0	NM_172833	240354.0	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-51939862-4	chr12	51939748	51939948	+	950.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177171, intron 11 of 35)	intron (NM_177171, intron 11 of 35)	31473.0	NM_177171	320487.0	Mm.131941	NM_177171	ENSMUSG00000035181	Heatr5a	C230081H03Rik|D930036F22Rik|mKIAA1316	HEAT repeat containing 5A	protein-coding	-1.84354474832578	-1.81325489144778	-1.53416061964661	-1.82993901100912	-1.8414184563789	-1.81126990231468	-1.82034119297928	-1.82859217979378	-1.52252619601533	0.665276690233728	1
Merged-chr1-156467824-4	chr1	156467734	156467934	+	961.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009230, intron 1 of 15)	intron (NM_009230, intron 1 of 15)	6494.0	NM_009230	20652.0	Mm.28099	NM_009230	ENSMUSG00000026600	Soat1	8430426K15Rik|ACAT-1|AW550831|Acact|ald|hid	sterol O-acyltransferase 1	protein-coding	3.57458072591225	2.84192630371235	3.60827540044171	3.20482064978287	3.06607842931449	2.5349076550426	3.88278634277425	3.22121996379069	-0.124046220742583	0.840121147358405	0.998431161219273
Merged-chr13-55535880-2	chr13	55535780	55535980	+	655.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134059, intron 3 of 16)	intron (NM_134059, intron 3 of 16)	778.0	NM_134059	72935.0	Mm.205045	NM_134059	ENSMUSG00000021494	Ddx41	2900024F02Rik|AA958953|ABS|AI324246	DEAD (Asp-Glu-Ala-Asp) box polypeptide 41	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-10071391-2	chr13	10071291	10071491	+	768.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_033269, intron 3 of 4)	intron (NM_033269, intron 3 of 4)	289412.0	NM_033269	12671.0	Mm.342315	NM_033269	ENSMUSG00000046159	Chrm3	Chrm-3|M3|M3R	cholinergic receptor, muscarinic 3, cardiac	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-56571923-4	chr14	56571822	56572022	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001014996)	promoter-TSS (NM_001014996)	-76.0	NM_001014996	219103.0	Mm.212525	NM_001014996	ENSMUSG00000064128	Cenpj	4932437H03Rik|CPAP|Gm81|LAP|LIP1|Sas4	centromere protein J	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-162565175-4	chr1	162565067	162565267	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-5348.0	NM_001356527	53330.0	Mm.10699	NM_016796	ENSMUSG00000026696	Vamp4	D1Ertd147e|Vamp-4	vesicle-associated membrane protein 4	protein-coding	3.90569995099633	3.68946088165294	4.48511278704718	2.71189288435875	4.58635347597339	4.55853596125719	4.69357339186039	4.3420017586851	0.940449918237354	0.0444825043231276	0.303354160781859
Merged-chr11-100619144-4	chr11	100619061	100619261	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019795, intron 1 of 13)	CpG	1007.0	NM_019795	56354.0	Mm.402409	NM_019795	ENSMUSG00000014195	Dnajc7	2010003F24Rik|2010004G07Rik|CCRP|Ttc2|mDj11|mTpr2	DnaJ heat shock protein family (Hsp40) member C7	protein-coding	3.33999193215429	3.79972348081697	3.54093551210342	3.01687089904921	2.53917722365572	3.52551224668178	2.61458967045122	3.59789431988917	-0.469453087025552	0.444501854666229	0.912265842646861
Merged-chr6-124806746-2	chr6	124806646	124806846	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-1915.0	NM_001306051	14794.0	Mm.261906	NM_013539	ENSMUSG00000038451	Spsb2	AI461677|C9|Grcc9|SSB2	splA/ryanodine receptor domain and SOCS box containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-136891988-6	chr4	136891947	136892147	+	923.9722289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007574, intron 2 of 2)	MIRb|SINE|MIR	867.0	NM_007574	12262.0	Mm.439732	NM_007574	ENSMUSG00000036896	C1qc	AI385742|C1qg|Ciqc	complement component 1, q subcomponent, C chain	protein-coding	3.15516900515251	3.45697008469792	3.66231662614573	4.20067349672974	2.04682019262778	2.88998591099427	3.26910179499947	4.13414121844456	-0.561188689070115	0.387562780962864	0.877169296907698
Merged-chr19-5841066-2	chr19	5840966	5841166	+	1000.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_131212, exon 1 of 1)	non-coding (NR_131212, exon 1 of 1)	4412.0	NR_131212	66961.0	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-45564414-4	chr17	45564319	45564519	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357105, intron 1 of 3)	intron (NM_001357105, intron 1 of 3)	483.0	NM_001357105	73836.0	Mm.289716	NM_028662	ENSMUSG00000037089	Slc35b2	1110003M08Rik|AA407792|AI842275|PAPST1|Slc35b1	solute carrier family 35, member B2	protein-coding	4.69889460871928	3.92400250182561	3.53660919099768	4.02140558502352	4.16016121594741	3.78383951464559	4.52368497436043	3.35462407468924	-0.133845607348403	0.785041613342955	0.998431161219273
Merged-chr7-4479962-2	chr7	4479862	4480062	+	656.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001290416, exon 20 of 20)	3' UTR (NM_001290416, exon 20 of 20)	-9078.0	NR_028416	320749.0	Mm.396688	NR_028416		D630041G03Rik	-	RIKEN cDNA D630041G03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-67098343-4	chr14	67098196	67098396	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25825.0	NM_001205188	71978.0	Mm.273997	NM_028032	ENSMUSG00000022052	Ppp2r2a	2410004D02Rik|mKIAA1541	protein phosphatase 2, regulatory subunit B, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-80761418-2	chr17	80761310	80761510	+	603.208374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-33385.0	NM_001290345	225028.0	Mm.311948	NM_001081357	ENSMUSG00000024242	Map4k3	4833416M01Rik|4833416M07Rik|9530052P13Rik|Glk|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1	mitogen-activated protein kinase kinase kinase kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-73727579-1	chr15	73727479	73727679	+	801.0	f0_balb.idr	intron (NM_001166388, intron 1 of 5)	intron (NM_001166388, intron 1 of 5)	2649.0	NM_001166388	19245.0	Mm.390807	NM_008975	ENSMUSG00000059895	Ptp4a3	AV088979|Prl-3|pPtp4a3	protein tyrosine phosphatase 4a3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-103921033-4	chr13	103920928	103921128	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289474)	promoter-TSS (NM_001289474)	-442.0	NM_001005868	59079.0	Mm.277354	NM_021563	ENSMUSG00000021709	Erbin	1700028E05Rik|Erbb2ip|mKIAA1225	Erbb2 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-63857379-1	chr16	63857279	63857479	+	564.0	f1_balb.idr	intron (NM_010140, intron 1 of 16)	intron (NM_010140, intron 1 of 16)	6778.0	NM_010140	13837.0	Mm.1977	NM_010140	ENSMUSG00000052504	Epha3	AW492086|Cek4|EK4|ETK1|End3|Hek|Hek4|Mek4|Tyro4	Eph receptor A3	protein-coding	-0.740010362248931	-0.878219495461772	-0.885747583835892	-0.888325961426182	-0.891976093305798	-0.875347529572599	-0.885011216337005	-0.126486538571356	2.28684166792884	0.445273407711896	1
Merged-chr4-142019437-4	chr4	142019366	142019566	+	863.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131014, intron 1 of 1)	MLT1K|LTR|ERVL-MaLR	1568.0	NR_131014	78917.0	Mm.139995	NR_131014	ENSMUSG00000085761	4930455G09Rik	-	RIKEN cDNA 4930455G09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-120583464-2	chr9	120583364	120583564	+	726.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	6133.0	NR_073359	76100.0	Mm.48212	NR_073359	ENSMUSG00000052658	5830454E08Rik	-	RIKEN cDNA 5830454E08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-69634190-4	chr3	69634088	69634288	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35228.0	NM_020026	26879.0	Mm.153710	NM_020026	ENSMUSG00000043300	B3galnt1	B3galt3|b3GT3	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 1	protein-coding	4.6496193927025	3.93675973538543	4.50196921713878	4.33462777943855	4.10541530435301	4.39997945603116	4.06376234037735	5.13316233749531	0.147123195343848	0.727660341576933	0.998431161219273
Merged-chr5-105877497-2	chr5	105877397	105877597	+	898.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_030777, intron 1 of 9)	intron (NR_030777, intron 1 of 9)	929.0	NM_018759	54367.0	Mm.248876	NM_018759	ENSMUSG00000029290	Zfp326	5730470H14Rik|ZAN75|Znf326	zinc finger protein 326	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-104369940-4	chr7	104369851	104370051	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11305.0	NM_175648	244183.0	Mm.347647	NM_175648	ENSMUSG00000052749	Trim30b	A530023O14Rik|Trim30-1	tripartite motif-containing 30B	protein-coding	4.26972677541477	4.19828827594025	4.55057786921772	3.73863630219455	4.25892482492315	3.84008102619914	4.43926583723202	4.40992629862359	0.0556770321001732	0.894735157269849	0.998431161219273
Merged-chr13-99353327-4	chr13	99353219	99353419	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173757, intron 2 of 10)	intron (NM_173757, intron 2 of 10)	8533.0	NM_173757	218506.0	Mm.30208	NM_173757	ENSMUSG00000041632	Mrps27	2610028H14Rik	mitochondrial ribosomal protein S27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-152026757-2	chr4	152026657	152026857	+	782.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_133879, exon 2 of 11)	exon (NM_133879, exon 2 of 11)	914.0	NM_133879	100090.0	Mm.24661	NM_133879	ENSMUSG00000028952	Zbtb48	0610011D15Rik|AI327031|Hkr3|TZAP	zinc finger and BTB domain containing 48	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117478606-2	chr8	117478506	117478706	+	590.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19341.0	NR_106046	102465653.0		NR_106046	ENSMUSG00000098483	Mir7078	Gm27386|mmu-mir-7078	microRNA 7078	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-85601532-2	chr3	85601432	85601632	+	570.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144896, intron 2 of 12)	intron (NM_144896, intron 2 of 12)	27403.0	NM_144896	229487.0	Mm.52275	NM_144896	ENSMUSG00000028085	Gatb	9430026F02Rik|Pet112|Pet112l	glutamyl-tRNA(Gln) amidotransferase, subunit B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56124498-2	chr17	56124398	56124598	+	643.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_013662, exon 17 of 17)	exon (NM_013662, exon 17 of 17)	-2552.0	NM_029796	76905.0	Mm.348025	NM_029796	ENSMUSG00000037095	Lrg1	1300008B03Rik|2310031E04Rik|Lrg|Lrhg	leucine-rich alpha-2-glycoprotein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-51129863-4	chr6	51129741	51129941	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	140069.0	NR_029719	387166.0		NR_029719	ENSMUSG00000065505	Mir148a	Mirn148|Mirn148a|mir-148a	microRNA 148a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-125441307-2	chr1	125441207	125441407	+	770.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5580.0	NM_001205385	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-130968688-4	chr7	130968593	130968793	+	964.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019564, intron 3 of 8)	intron (NM_019564, intron 3 of 8)	32490.0	NM_019564	56213.0	Mm.30156	NM_019564	ENSMUSG00000006205	Htra1	AI429470|HTRA|L56|Prss11|RSPP11	HtrA serine peptidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-111967780-2	chr13	111967729	111967929	+	631.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	99893.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	-2.05752322593321	-2.15521190974092	-2.16307242109104	-2.16952927915413	-2.17938029103484	-2.15350850414045	-2.16129297361887	-2.16837350464794	-0.683654500252594	0.846597994014493	1
Merged-chr6-53820244-2	chr6	53820144	53820344	+	751.666687	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_025817, exon 1 of 1)	5' UTR (NM_025817, exon 1 of 1)	581.0	NM_025817	66873.0	Mm.422727	NM_025817	ENSMUSG00000043496	Tril	1200009O22Rik|AI316813|mKIAA0644	TLR4 interactor with leucine-rich repeats	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-65658159-4	chr3	65658040	65658240	+	908.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1148.0	NR_106200	102465905.0		NR_106200	ENSMUSG00000098944	Mir8120	Gm27637|mmu-mir-8120	microRNA 8120	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-98541171-4	chr15	98541041	98541241	+	939.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6872.0	NR_153345	69612.0	Mm.229107	NM_133714	ENSMUSG00000022992	Kansl2	2310037I24Rik|B930009D17	KAT8 regulatory NSL complex subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-135211968-4	chr3	135211796	135211996	+	887.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173762)	promoter-TSS (NM_173762)	-667.0	NM_173762	229841.0	Mm.161470	NM_173762	ENSMUSG00000045328	Cenpe	312kDa|AU019344|BC049989|C530022J18|CENP-E|Kif10	centromere protein E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-6554230-2	chr15	6554130	6554330	+	589.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25617.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101539149-2	chr7	101539076	101539276	+	918.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16626.0	NM_007490	11871.0	Mm.439746	NM_007490	ENSMUSG00000092517	Art2a-ps	ARTC2|Art2a|Ly92a|Rt-6|Rt6|Rt6-1	ADP-ribosyltransferase 2a, pseudogene	protein-coding	-0.994585751377257	-0.978031916157609	-0.989363021134048	-0.57791498797684	-0.994103116853043	-0.794883893345099	-0.986914427080284	-0.82901021841114	-0.452274283403841	0.879415847742616	1
Merged-chr11-116490422-5	chr11	116490301	116490501	+	974.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026364)	promoter-TSS (NM_026364)	-55.0	NM_026364	67763.0	Mm.25125	NM_026364	ENSMUSG00000015869	Prpsap1	5730409F23Rik|PAP39	phosphoribosyl pyrophosphate synthetase-associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191313362-2	chr1	191313284	191313484	+	933.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_025424, intron 1 of 3)	intron (NM_025424, intron 1 of 3)	4734.0	NM_025424	66208.0	Mm.46444	NM_025424	ENSMUSG00000037499	Nenf	1110060M21Rik|SCIRP10|Spuf	neuron derived neurotrophic factor	protein-coding	2.13602942846427	1.18001909583973	2.89326759668896	2.15493615777526	1.31777401883499	2.54415089275922	2.1190027926309	1.12753546302194	-0.73674968820486	0.504777847809837	0.940910090837248
Merged-chr5-149377746-2	chr5	149377646	149377846	+	574.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34003.0	NM_027519	70717.0	Mm.252139	NM_027519	ENSMUSG00000029659	Medag	6330406I15Rik|Awms3|MEDA-4|Meda4|mAWMS3	mesenteric estrogen dependent adipogenesis	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-64150982-2	chr13	64150882	64151082	+	596.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361047, intron 1 of 5)	B1_Mus2|SINE|Alu	1391.0	NM_001361047	238673.0	Mm.300065	NM_175494	ENSMUSG00000044934	Zfp367	8030486J21Rik|ZFF29a|ZFF29b|Znf367	zinc finger protein 367	protein-coding	-2.18292257394068	-2.15545247547656	-2.03304972317742	-2.17058342868585	-2.18099422382073	-2.1536522739386	-2.16187909550322	-2.16936197735154	-0.683654500252594	0.846597994014493	1
Merged-chr8-37791780-1	chr8	37791680	37791880	+	967.0	f0_balb.idr	intron (NM_145841, intron 2 of 7)	Lx6|LINE|L1	460422.0	NR_029884	723860.0		NR_029884	ENSMUSG00000065457	Mir383	Mirn383|mir-383|mmu-mir-383	microRNA 383	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-104901608-3	chr3	104901487	104901687	+	697.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253702, intron 11 of 13)	intron (NM_001253702, intron 11 of 13)	37081.0	NM_001253702	229681.0	Mm.206379	NM_153091	ENSMUSG00000045576	St7l	St7r	suppression of tumorigenicity 7-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70833217-5	chr8	70833137	70833337	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6483.0	NM_027560	70807.0	Mm.24215	NM_027560	ENSMUSG00000002910	Arrdc2	4632416I05Rik|Ilad1	arrestin domain containing 2	protein-coding	5.5162150880329	6.48393183461998	6.39574394311861	5.67164597320406	5.57655241792421	6.2086183320276	6.44907051416252	5.43728793664902	-0.108393605034386	0.718706134581205	0.998431161219273
Merged-chr5-72491398-3	chr5	72491297	72491497	+	675.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122756, intron 1 of 21)	intron (NM_001122756, intron 1 of 21)	12811.0	NM_016869	53419.0	Mm.332425	NM_016869	ENSMUSG00000005220	Corin	AV273130|Lrp4	corin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-52262377-3	chr2	52262265	52262465	+	725.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010889, intron 54 of 156)	MER20|DNA|hAT-Charlie	-28637.0	NR_040620	78049.0	Mm.243883	NR_040620		4930573O16Rik	-	RIKEN cDNA 4930573O16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-65592555-2	chr5	65592455	65592655	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016786, intron 5 of 6)	intron (NM_016786, intron 5 of 6)	55310.0	NM_001310619	53323.0	Mm.319512	NM_016786	ENSMUSG00000029203	Ube2k	AW492011|D5Ertd601e|E2-25k|HIP-2|Hip2|Hypg|Lig	ubiquitin-conjugating enzyme E2K	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80711293-1	chr10	80711193	80711393	+	1000.0	f1_c57bl6.idr	intron (NM_007460, intron 23 of 30)	B4A|SINE|B4	8600.0	NM_027829	71564.0	Mm.35802	NM_027829	ENSMUSG00000055862	Izumo4	9030607L17Rik|AI550407	IZUMO family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70652723-2	chr8	70652647	70652847	+	783.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023217, intron 2 of 4)	intron (NM_023217, intron 2 of 4)	6991.0	NM_023217	66522.0	Mm.154906	NM_023217	ENSMUSG00000056204	Pgpep1	2810003H13Rik|Gm19458|PAP-I|PGP|PGP-I|PGPI|Pcp	pyroglutamyl-peptidase I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120786590-4	chr8	120786514	120786714	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47975.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-47351067-4	chr14	47350944	47351144	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22816.0	NM_010705	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	4.17262208674272	4.58922483524905	3.91270005210543	3.94110034660543	3.48400739410479	4.80308355156246	4.14807781185876	4.35391132310959	0.119164059408853	0.792475197592461	0.998431161219273
Merged-chr5-120503163-2	chr5	120503063	120503263	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023625, intron 1 of 11)	intron (NM_023625, intron 1 of 11)	460.0	NM_023625	71772.0	Mm.100065	NM_023625	ENSMUSG00000029598	Plbd2	1300012G16Rik|AU019810|P76	phospholipase B domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-95427782-4	chr8	95427675	95427875	+	946.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008187, intron 1 of 5)	intron (NM_008187, intron 1 of 5)	7094.0	NM_008187	14894.0	Mm.2080	NM_008187	ENSMUSG00000031796	Cfap20	2600014O15Rik|AL024127|Gtl3|T10-2A2	cilia and flagella associated protein 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-43562204-4	chr7	43562094	43562294	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001008549)	promoter-TSS (NM_001008549)	-176.0	NM_001008549	210104.0	Mm.333821	NM_001008549	ENSMUSG00000056592	Zfp658	-	zinc finger protein 658	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-155050404-2	chr2	155050304	155050504	+	989.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_015770, intron 3 of 3)	intron (NM_015770, intron 3 of 3)	24093.0	NM_016661	269378.0	Mm.330692	NM_016661	ENSMUSG00000027597	Ahcy	AA987153|AL024110|CuBP|SAHH	S-adenosylhomocysteine hydrolase	protein-coding	0.0774826844045388	0.756860555790329	0.0920148425495164	0.547517203791229	0.0788413261008409	0.883255840267119	0.0935635771176615	0.0875299037177081	-0.337479677169941	0.874864038550095	1
Merged-chr17-47593436-4	chr17	47593344	47593544	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007632)	promoter-TSS (NM_007632)	-23.0	NM_007632	12445.0	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-56599061-3	chr19	56598940	56599140	+	747.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_025811)	TTS (NM_025811)	50779.0	NM_025811	66866.0	Mm.46346	NM_025811	ENSMUSG00000025078	Nhlrc2	1200003G01Rik|AI835049|AV002846|AW496455	NHL repeat containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-85775213-3	chr1	85775110	85775310	+	926.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_108086)	promoter-TSS (NR_108086)	-61.0	NR_108086	77762.0	Mm.434298	NR_108086	ENSMUSG00000100217	9930111H07Rik	-	RIKEN cDNA 9930111H07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-114970950-4	chr4	114970851	114971051	+	944.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025647, intron 1 of 5)	intron (NM_025647, intron 1 of 5)	16277.0	NM_025647	66588.0	Mm.294159	NM_025647	ENSMUSG00000028719	Cmpk1	0610011D08Rik|CK|Cmpk|UMP-CMPk	cytidine monophosphate (UMP-CMP) kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-26918705-2	chr2	26918605	26918805	+	765.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013678, intron 3 of 5)	intron (NM_013678, intron 3 of 5)	-2175.0	NM_013677	20930.0	Mm.347512	NM_013677	ENSMUSG00000015790	Surf1	0610010F23Rik|Surf-1	surfeit gene 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81103476-2	chr10	81103376	81103576	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1140.0	NR_049187	100885826.0		NR_049187	ENSMUSG00000093498	Mir5615-2	Gm23367|mir-5615-2|mmu-mir-5615-2	microRNA 5615-2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-69774949-4	chr8	69774747	69774947	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177899)	promoter-TSS (NM_177899)	64.0	NM_177899	330788.0	Mm.41364	NM_177899	ENSMUSG00000043090	Zfp866	9830167H18Rik|AI875089|C85843|D330038O06Rik	zinc finger protein 866	protein-coding	5.04822983197073	4.35842148121545	5.71246537823129	5.48925865778675	4.69719603798454	5.20603549126669	4.84759832109243	5.12291841588578	-0.314801037245156	0.369702801997063	0.863535538941096
Merged-chr13-60671973-2	chr13	60671873	60672073	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	69762.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-29050136-2	chr17	29049960	29050160	+	669.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17400.0	NR_036613	20383.0	Mm.6787	NM_013663	ENSMUSG00000071172	Srsf3	AL024116|Sfrs3|X16	serine/arginine-rich splicing factor 3	protein-coding	-1.3681463318974	-1.33624156493372	-1.34650167276047	-0.80669348975676	-1.36769697821496	-1.33401815676661	-1.34417900924365	-1.3534210303531	-2.3580830592467	0.49586638340111	1
Merged-chr11-118980548-4	chr11	118980450	118980650	+	957.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M3|LINE|L1	-7631.0	NM_001359574	238011.0	Mm.244114	NM_001030291	ENSMUSG00000046697	Enpp7	Alk-SMase|Gm254	ectonucleotide pyrophosphatase/phosphodiesterase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102298006-2	chr12	102297906	102298106	+	588.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161365, intron 1 of 9)	intron (NM_001161365, intron 1 of 9)	14365.0	NM_001161365	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-75472522-2	chr10	75472422	75472622	+	679.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23012.0	NR_045841	71125.0	Mm.399516	NR_045841		4933407G14Rik	-	RIKEN cDNA 4933407G14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36342083-4	chr18	36341999	36342199	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-6525.0	NM_001081365	66060.0	Mm.272527	NM_001081365	ENSMUSG00000046727	Cystm1	0610010O12Rik	cysteine-rich transmembrane module containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-75040822-2	chr8	75040722	75040922	+	562.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001136259, intron 1 of 15)	MIRb|SINE|MIR	7136.0	NM_011622	21968.0	Mm.1967	NM_011622	ENSMUSG00000042870	Tom1	-	target of myb1 trafficking protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89785549-4	chr3	89785391	89785591	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11882.0	NM_027315	70093.0	Mm.41438	NM_027315	ENSMUSG00000042572	Ube2q1	1110002C01Rik|2310012M18Rik|AI854014|Gtap|NICE-5|PRO3094|Ube2q	ubiquitin-conjugating enzyme E2Q family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-46304298-2	chr4	46304198	46304398	+	574.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39896.0	NM_183298	110805.0	Mm.354634	NM_183298	ENSMUSG00000070990	Foxe1	Titf2	forkhead box E1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-33827050-3	chr17	33826953	33827153	+	860.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_103515)	TTS (NR_103515)	2408.0	NR_103514	66416.0	Mm.29513	NM_023202	ENSMUSG00000041881	Ndufa7	14.5kDa|2400007M02Rik|CI-B14.5a	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7 (B14.5a)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-31283235-4	chr9	31283141	31283341	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	11840.0	NM_001101597	638580.0	Mm.373655	NM_001101597		Gm7244	EG638580	predicted gene 7244	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-103942871-2	chr7	103942771	103942971	+	870.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3A|LINE|L1	-3697.0	NM_146354	258351.0	Mm.377448	NM_146354	ENSMUSG00000073937	Olfr633	MOR12-5	olfactory receptor 633	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-56131833-2	chr16	56131733	56131933	+	841.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360073, intron 7 of 24)	B2_Mm2|SINE|B2	56353.0	NM_001304503	66315.0	Mm.255784	NM_025483	ENSMUSG00000052917	Senp7	2410152H17Rik|2810413I22Rik|2900036C23Rik|6030449K19Rik|AI790676	SUMO1/sentrin specific peptidase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-35236573-4	chr6	35236477	35236677	+	975.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027513, intron 34 of 42)	intron (NM_027513, intron 34 of 42)	-16122.0	NR_015608	67705.0	Mm.228046	NR_015608	ENSMUSG00000073155	1810058I24Rik	AI414869|AI848234	RIKEN cDNA 1810058I24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-32699950-2	chr16	32699850	32700050	+	930.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26796.0	NM_001289443	51789.0	Mm.251115	NM_016788	ENSMUSG00000022791	Tnk2	Ack|Ack-1|Ack1|Cdgip|Pyk1	tyrosine kinase, non-receptor, 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-90217670-2	chr7	90217570	90217770	+	885.208374	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CAAAAA)n|Simple_repeat|Simple_repeat	47762.0	NM_029256	75338.0	Mm.487222	NM_029256	ENSMUSG00000030617	Ccdc83	4930549K11Rik|4930554C01Rik|4932423M01Rik	coiled-coil domain containing 83	protein-coding	1.7951314376606	2.41101458307279	2.52910775314716	1.30108817269018	2.26270177112018	2.42893354449187	1.95250214361375	2.37727556677824	0.38878420443513	0.679629210967782	0.995323723386884
Merged-chr7-109209273-2	chr7	109209173	109209373	+	576.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34066.0	NM_001302205	109594.0	Mm.360145	NM_057173	ENSMUSG00000036111	Lmo1	Rbtn-1|Rbtn1|Ttg1	LIM domain only 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44306187-2	chr7	44306042	44306242	+	688.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_009131, intron 2 of 3)	intron (NM_009131, intron 2 of 3)	817.0	NM_009131	20256.0	Mm.20428	NM_009131	ENSMUSG00000004473	Clec11a	AW457320|Clecsf3|Scgf	C-type lectin domain family 11, member a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133207027-4	chr4	133206897	133207097	+	862.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	5539.0	NM_008154	14748.0	Mm.4721	NM_008154	ENSMUSG00000049649	Gpr3	Gpcr20|Gpcr21|Gpcr3	G-protein coupled receptor 3	protein-coding	3.84413765436238	4.24309107753823	1.8806999976461	4.1676730831216	5.00142935265191	4.71347892794152	4.37089182382264	4.76358204182501	1.22152336063661	0.0173994138698072	0.161754337618325
Merged-chr2-6493373-2	chr2	6493273	6493473	+	700.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	140637.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-149578980-2	chr4	149578880	149579080	+	581.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7488.0	NM_001290989	65945.0	Mm.38993	NM_023051	ENSMUSG00000039953	Clstn1	1810034E21Rik|Cst-1|Cstn1	calsyntenin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-62213703-4	chr10	62213604	62213804	+	721.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197996, intron 1 of 7)	ORR1B1|LTR|ERVL-MaLR	17514.0	NM_197996	70423.0	Mm.416781	NM_197996	ENSMUSG00000037031	Tspan15	1110036D12Rik|2700063A19Rik|AW048364|Tm4sf15	tetraspanin 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-90828794-4	chr8	90828702	90828902	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177224)	promoter-TSS (NM_177224)	-33.0	NM_177224	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	3.08559352877655	3.945589168454	3.04189248147423	4.2242437284527	4.41098792907994	2.74621973398607	2.94129410876514	2.84326286888158	-0.310070627501101	0.632440353947806	0.982230082053879
Merged-chr7-19669589-4	chr7	19669500	19669700	+	955.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4320.0	NM_001309795	11813.0	Mm.28394	NM_001277944	ENSMUSG00000002992	Apoc2	apo-CII|apoC-II	apolipoprotein C-II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-136173094-2	chr1	136172994	136173194	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039472, intron 34 of 34)	intron (NM_001039472, intron 34 of 34)	39734.0	NM_001329610	76422.0	Mm.159735	NM_001329610		Mroh3	2310006M14Rik	maestro heat-like repeat family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-128378495-2	chr7	128378395	128378595	+	898.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026418, intron 4 of 4)	AT_rich|Low_complexity|Low_complexity	39677.0	NM_026418	67865.0	Mm.18635	NM_026418	ENSMUSG00000030844	Rgs10	2310010N19Rik	regulator of G-protein signalling 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-19352023-4	chr2	19351915	19352115	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_126563, exon 4 of 4)	non-coding (NR_126563, exon 4 of 4)	7698.0	NR_126563	108871.0	Mm.107666	NR_126563		4930447M23Rik	-	RIKEN cDNA 4930447M23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-110614383-4	chr7	110614283	110614483	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177324, intron 1 of 40)	CpG	537.0	NM_177324	319934.0	Mm.102970	NM_177324	ENSMUSG00000038371	Sbf2	4833411B01Rik|AA414977|AI317167|B430219L04Rik|Mtmr13|mMTMH1	SET binding factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-134490197-3	chr4	134490095	134490295	+	945.2666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME4b|LINE|L1	-6566.0	NM_001285845	71904.0	Mm.142343	NM_027995	ENSMUSG00000037348	Paqr7	2310021M12Rik|AV001994|BB007237|Mpra|PGLP|mPR	progestin and adipoQ receptor family member VII	protein-coding	0.73807884808459	0.775749893669646	0.295898283744887	0.448666451805311	0.74808884981136	0.649897068294217	0.297242277861802	0.292021426374322	-0.420354523331845	0.817207708623925	1
Merged-chr4-143142031-4	chr4	143141921	143142121	+	975.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001256380, intron 7 of 7)	intron (NM_001256380, intron 7 of 7)	-5859.0	NR_105988	102465618.0		NR_105988	ENSMUSG00000106597	Mir7021	mmu-mir-7021	microRNA 7021	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-113100875-2	chr11	113100807	113101007	+	740.25	f0_balb.idr|f0_c57.idr	intron (NR_015556, intron 1 of 2)	intron (NR_015556, intron 1 of 2)	100931.0	NR_015556	72386.0	Mm.266961	NR_015556	ENSMUSG00000087259	2610035D17Rik	-	RIKEN cDNA 2610035D17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-165681589-4	chr1	165681414	165681614	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038846, intron 1 of 5)	intron (NM_001038846, intron 1 of 5)	26580.0	NM_001038846	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-139951314-1	chr7	139951214	139951414	+	548.0	f1_c57bl6.idr	Intergenic	Intergenic	6308.0	NR_106157	102465788.0		NR_106157	ENSMUSG00000105165	Mir7686	mmu-mir-7686	microRNA 7686	ncRNA	0.838434401482111	2.83958399686455	1.39236500285328	0.877738929790596	1.71692429258871	2.09809602766408	1.89126505141887	0.881718480345934	-0.229410820913983	0.859667682075627	0.998431161219273
Merged-chr11-12559397-1	chr11	12559297	12559497	+	786.0	f0_balb.idr	Intergenic	Intergenic	-94437.0	NM_001282993	12808.0	Mm.22847	NM_172496	ENSMUSG00000020173	Cobl	-	cordon-bleu WH2 repeat	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-84562865-4	chr1	84562758	84562958	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152915, intron 4 of 12)	MTB_Mm|LTR|ERVL-MaLR	-132981.0	NR_039588	100628595.0		NR_039588	ENSMUSG00000093254	Mir5126	mir-5126|mmu-mir-5126|mu-mir-5126	microRNA 5126	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-8512392-2	chr15	8512292	8512492	+	562.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-67929.0	NM_201232	71175.0	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	NIPBL cohesin loading factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-84769035-2	chr18	84768935	84769135	+	601.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24968.0	NR_155706	102641800.0		NR_155706		Gm38576	-	predicted gene, 38576	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-128234999-4	chr7	128234886	128235086	+	997.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177001, exon 1 of 1)	3' UTR (NM_177001, exon 1 of 1)	-2371.0	NM_146205	233912.0	Mm.475117	NM_146205	ENSMUSG00000042178	Armc5	AW049683|BC032200	armadillo repeat containing 5	protein-coding	-0.102709951045908	-0.0853252271951193	0.78728391001592	0.223526152197021	0.299829579853216	-0.0840487439986514	-0.089746581284289	-0.0946234830934144	-1.84306971004006	0.421123501398716	1
Merged-chr11-29824870-2	chr11	29824783	29824983	+	659.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_176829, exon 1 of 1)	exon (NM_176829, exon 1 of 1)	785.0	NM_176829	216622.0	Mm.443260	NM_176829	ENSMUSG00000078157	4931440F15Rik	Fem1ab	RIKEN cDNA 4931440F15 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-111388702-1	chr10	111388602	111388802	+	545.0	f1_c57bl6.idr	Intergenic	Intergenic	-84525.0	NM_001358932	53605.0	Mm.290407	NM_015781	ENSMUSG00000058799	Nap1l1	AA407126|AI256722|D10Ertd68e|NAP-1	nucleosome assembly protein 1-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-102440462-3	chr11	102440348	102440548	+	852.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199200, intron 3 of 7)	intron (NM_199200, intron 3 of 7)	7215.0	NM_199200	217219.0	Mm.259924	NM_199200	ENSMUSG00000034685	Fam171a2	-	family with sequence similarity 171, member A2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-23759727-4	chr19	23759668	23759868	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177034, intron 1 of 12)	intron (NM_177034, intron 1 of 12)	892.0	NM_177034	319924.0	Mm.22879	NM_177034	ENSMUSG00000024897	Apba1	6430513E09Rik|Lin-10|Mint|Mint1|Urop11|X11|X11alpha	amyloid beta (A4) precursor protein binding, family A, member 1	protein-coding	1.60879596918989	2.73089102947904	2.63567999671068	2.37259990229706	2.85057541183937	1.81574753270291	1.27596013785688	1.7024849176522	-0.720781446944891	0.464977234728603	0.922521920152562
Merged-chr5-64239514-2	chr5	64239414	64239614	+	872.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 1 of 18)	intron (NM_001289514, intron 1 of 18)	9157.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-57250040-1	chr17	57249940	57250140	+	912.8333130000001	f0_balb.idr	intron (NM_001242390, intron 1 of 14)	intron (NM_001242390, intron 1 of 14)	589.0	NM_001242389	106628.0	Mm.37368	NM_134125	ENSMUSG00000019487	Trip10	AI646975|Cip4	thyroid hormone receptor interactor 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141467787-4	chr7	141467694	141467894	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001111050)	promoter-TSS (NM_001111050)	-23.0	NR_152219	100126795.0	Mm.386851	NR_152219	ENSMUSG00000073787	Gm10575	-	predicted gene 10575	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171019814-4	chr1	171019713	171019913	+	990.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144559, intron 2 of 4)	intron (NM_144559, intron 2 of 4)	887.0	NM_144559	246256.0	Mm.251254	NM_144559	ENSMUSG00000059089	Fcgr4	4833442P21Rik|CD16-2|FcgRIV|FcgammaRIV|Fcgr3a|Fcrl3	Fc receptor, IgG, low affinity IV	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133837110-4	chr4	133836953	133837153	+	823.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37678.0	NM_001285506	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	0.792734369314627	0.737417387543963	0.514279779595316	0.506573530992348	1.2149413285849	0.526385152302049	1.44947481144632	0.983636267846926	2.452973560418	0.137988926609003	1
Merged-chr3-95655333-2	chr3	95655233	95655433	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3388.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-100601830-3	chr15	100601673	100601873	+	816.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13D3A1|LTR|ERVK	-1789.0	NM_001304965	19009.0	Mm.28825	NM_010127	ENSMUSG00000009739	Pou6f1	2310038G18Rik|C79593|Emb|cns-1	POU domain, class 6, transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-85650021-3	chr1	85649923	85650123	+	735.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001313712)	promoter-TSS (NM_001313712)	35.0	NM_001313714	20684.0	Mm.290906	NM_013673	ENSMUSG00000026222	Sp100	A430075G10Rik	nuclear antigen Sp100	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-141004421-7	chr5	141004322	141004522	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3826.0	NM_175362	108723.0	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-116665211-3	chr4	116665124	116665324	+	692.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13550.0	NM_021473	58810.0	Mm.30085	NM_021473	ENSMUSG00000028692	Akr1a1	2610201A18Rik|Akr1a4	aldo-keto reductase family 1, member A1 (aldehyde reductase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-23594826-4	chr9	23594725	23594925	+	986.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TAAA)n|Simple_repeat|Simple_repeat	371749.0	NM_028472	73230.0	Mm.335020	NM_028472	ENSMUSG00000031963	Bmper	3110056H04Rik|CV-2|Crim3|Cv2	BMP-binding endothelial regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71561551-4	chr8	71561385	71561585	+	851.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_145598, exon 2 of 2)	3' UTR (NM_145598, exon 2 of 2)	-2614.0	NM_001100462	434325.0	Mm.33613	NM_001100462	ENSMUSG00000043664	Tmem221	-	transmembrane protein 221	protein-coding	3.48256718015295	3.6176981489085	2.54355432337163	2.61364285604193	3.39064080679565	2.03062367990146	3.72925844268771	3.67986360816259	0.330724529955568	0.627975560973942	0.980912176761026
Merged-chr12-17522733-2	chr12	17522618	17522818	+	802.0	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22155.0	NM_013614	18263.0	Mm.34102	NM_013614	ENSMUSG00000011179	Odc1	ODC	ornithine decarboxylase, structural 1	protein-coding	3.2372118613639	3.25842571221494	2.00748318634687	0.857744965097245	0.808184207347777	1.54106722397675	1.21795554483964	0.86359049532274	-3.87741033249589	0.00203227630759085	0.0338030283805107
Merged-chr2-49448411-2	chr2	49448311	49448511	+	583.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3075.0	NM_172663	227867.0	Mm.29167	NM_172663	ENSMUSG00000069495	Epc2	5830499L14|D2Ertd694e	enhancer of polycomb homolog 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-61435310-3	chr9	61435225	61435425	+	872.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	62959.0	NM_001083927	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127629603-2	chr10	127629484	127629684	+	621.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8436.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36401614-1	chr18	36401514	36401714	+	540.0	f1_balb.idr	Intergenic	Intergenic	52881.0	NM_026027	67199.0	Mm.30184	NM_026027	ENSMUSG00000024346	Pfdn1	2700086I23Rik|AA408327|AU044714	prefoldin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-152152397-4	chr4	152152283	152152483	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207687)	promoter-TSS (NM_207687)	-176.0	NM_207687	56226.0	Mm.264215	NM_019585	ENSMUSG00000028943	Espn	je	espin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-73927156-4	chr17	73926990	73927190	+	945.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011723, intron 6 of 35)	intron (NM_011723, intron 6 of 35)	23106.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-99685124-2	chr6	99685024	99685224	+	611.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7243.0	NM_008158	14761.0	Mm.394313	NM_008158	ENSMUSG00000072875	Gpr27	-	G protein-coupled receptor 27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-75853649-4	chr10	75853553	75853753	+	973.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6597.0	NM_010798	17319.0	Mm.2326	NM_010798	ENSMUSG00000033307	Mif	GIF|Glif	macrophage migration inhibitory factor (glycosylation-inhibiting factor)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-154334889-3	chr4	154334803	154335003	+	748.194458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291026, intron 11 of 16)	intron (NM_001291026, intron 11 of 16)	-35008.0	NM_001112744	230972.0	Mm.38481	NM_001112744	ENSMUSG00000029032	Arhgef16	-	Rho guanine nucleotide exchange factor (GEF) 16	protein-coding	1.47278119367413	2.01167282942858	0.908005434721707	1.27999052443295	1.48598303238775	2.02870116166338	0.911959290513109	1.28647370363639	0.0384243029907164	0.975860682777338	0.998431161219273
Merged-chr15-89425774-2	chr15	89425674	89425874	+	659.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009948)	promoter-TSS (NM_009948)	88.0	NM_009948	12895.0	Mm.227738	NM_009948	ENSMUSG00000078937	Cpt1b	Cpt1|Cpt1-m|Cpti|Cpti-m|M-cpti	carnitine palmitoyltransferase 1b, muscle	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-36231324-3	chr15	36231226	36231426	+	696.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012031, intron 16 of 18)	intron (NM_012031, intron 16 of 18)	8838.0	NR_106173	102465888.0		NR_106173	ENSMUSG00000098457	Mir8097	Gm27497|mmu-mir-8097	microRNA 8097	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64625042-3	chr5	64624924	64625124	+	762.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14325.0	NR_045078	100042198.0	Mm.25191	NR_045078	ENSMUSG00000105402	Gm3716	Gm1683	predicted gene 3716	ncRNA	2.08941528766151	2.74384332436939	1.98740897340972	2.30592390992955	1.99039861419725	2.21688386724953	2.00171563647917	2.31741712760596	-0.438844871041024	0.607432995019794	0.974576632476413
Merged-chr2-117304127-4	chr2	117304026	117304226	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011246, intron 3 of 16)	intron (NM_011246, intron 3 of 16)	38751.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-9880566-4	chr10	9880425	9880625	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081344, intron 2 of 25)	Lx|LINE|L1	20515.0	NM_001081344	78808.0	Mm.331751	NM_030191	ENSMUSG00000019790	Stxbp5	0710001E20Rik|4930565N16Rik|AW742610|LGL3|mKIAA1006	syntaxin binding protein 5 (tomosyn)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-98032388-4	chr3	98032277	98032477	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010928, intron 1 of 33)	intron (NM_010928, intron 1 of 33)	18839.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-40076532-2	chr10	40076432	40076632	+	916.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028247, exon 3 of 3)	3' UTR (NM_028247, exon 3 of 3)	-51264.0	NM_144821	215929.0	Mm.55513	NM_144821	ENSMUSG00000038522	Mfsd4b1	AI317395|AI482555|Naglt1a	major facilitator superfamily domain containing 4B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-70421571-4	chr9	70421452	70421652	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007630)	promoter-TSS (NM_007630)	2.0	NM_007630	12442.0	Mm.22592	NM_007630	ENSMUSG00000032218	Ccnb2	CycB2	cyclin B2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-44768140-4	chr16	44768034	44768234	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021325, intron 1 of 6)	intron (NM_021325, intron 1 of 6)	2398.0	NM_021325	57781.0	Mm.416152	NM_021325	ENSMUSG00000022667	Cd200r1	CD200R|Mox2r|OX2R	CD200 receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-3114082-1	chr17	3113982	3114182	+	561.0	f1_balb.idr	promoter-TSS (NM_134123)	promoter-TSS (NM_134123)	-890.0	NM_134123	106583.0	Mm.124373	NM_134123	ENSMUSG00000046201	Scaf8	A630086M08Rik|A930036P18Rik|AA408306|AI447644|AI448652|AU015035|Rbm16|mKIAA1116	SR-related CTD-associated factor 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-112748249-4	chr13	112748141	112748341	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52536.0	NM_008903	19012.0	Mm.291029	NM_008247	ENSMUSG00000021759	Plpp1	Hic53|Hpic53|LPP-1|LPP1|PAP-2a|PAP2-alpha|PAP2a|Ppap2a|mPAP	phospholipid phosphatase 1	protein-coding	2.85419927322175	2.02975936289841	2.39536074215273	1.48754303312708	1.8043677924346	2.04607881643298	3.56241153674308	1.49556433412899	0.471909981583459	0.623678058060198	0.980259659844413
Merged-chr1-88585551-2	chr1	88585451	88585651	+	690.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER5A|DNA|hAT-Charlie	34034.0	NR_037971	100503197.0	Mm.99352	NR_037971	ENSMUSG00000100798	Gm19589	-	predicted gene, 19589	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-84458134-3	chr2	84458026	84458226	+	574.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001177320, exon 3 of 8)	exon (NM_001177320, exon 3 of 8)	16048.0	NM_011576	21788.0	Mm.124316	NM_011576	ENSMUSG00000027082	Tfpi	A630013F22Rik|AW552122|EPI|LACI	tissue factor pathway inhibitor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-89571746-2	chr1	89571646	89571846	+	901.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037136, intron 1 of 16)	intron (NM_001037136, intron 1 of 16)	112146.0	NR_015540	74403.0	Mm.444291	NR_015540		4933400F21Rik	1700091C04Rik|4930565K10Rik	RIKEN cDNA 4933400F21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-58973506-4	chr1	58973413	58973613	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172406)	promoter-TSS (NM_172406)	-9.0	NM_172656	227154.0	Mm.286006	NM_172656	ENSMUSG00000026027	Stradb	AA792893|Als2cr2|B830008M19|D1Ucla2|ILPIP|ILPIPA|PRO1038|Papk|Syradb	STE20-related kinase adaptor beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-27260283-4	chr8	27260184	27260384	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007918)	promoter-TSS (NM_007918)	-43.0	NM_007918	13685.0	Mm.6700	NM_007918	ENSMUSG00000031490	Eif4ebp1	4e-bp1|AA959816|PHAS-I	eukaryotic translation initiation factor 4E binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-55492374-3	chr12	55492278	55492478	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010907, exon 1 of 6)	exon (NM_010907, exon 1 of 6)	269.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-40721016-3	chr4	40720887	40721087	+	935.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_077221, exon 3 of 3)	non-coding (NR_077221, exon 3 of 3)	1330.0	NR_077221	622208.0	Mm.471544	NR_077221		Gm6297	-	predicted gene 6297	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-38702634-2	chr16	38702534	38702734	+	577.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_020260, intron 1 of 11)	RSINE1|SINE|B4	10401.0	NM_020260	12549.0	Mm.370848	NM_020260	ENSMUSG00000022799	Arhgap31	5830477L08Rik|AU041750|Cdgap|D330026I07Rik	Rho GTPase activating protein 31	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-105937306-4	chr12	105937201	105937401	+	946.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72962.0	NM_011705	22367.0	Mm.2981	NM_011705	ENSMUSG00000021115	Vrk1	51PK	vaccinia related kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-122631066-4	chr2	122630981	122631181	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001033256, exon 1 of 2)	exon (NM_001033256, exon 1 of 2)	456.0	NM_001033256	214616.0	Mm.271306	NM_001033256		Spata5l1	AV141009|C130039A10Rik	spermatogenesis associated 5-like 1	protein-coding	3.97883755809773	3.73771222802003	3.69184495819931	3.97320956987316	4.43217529336226	2.99391305372314	2.73102660751616	3.68056339315001	-0.285668562171859	0.61003679620524	0.974992433107985
Merged-chr7-84085880-2	chr7	84085780	84085980	+	561.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030728, intron 1 of 28)	intron (NM_030728, intron 1 of 28)	625.0	NM_030728	80982.0	Mm.160389	NM_030728	ENSMUSG00000052353	Cemip	12H19.01.T7|6330404C01Rik|9930013L23Rik|AY007814|Kiaa1199	cell migration inducing protein, hyaluronan binding	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102698292-2	chr12	102698192	102698392	+	591.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_172584, intron 1 of 9)	intron (NM_172584, intron 1 of 9)	6577.0	NM_172584	217837.0	Mm.482192	NM_172584	ENSMUSG00000057963	Itpk1	BC031182	inositol 1,3,4-triphosphate 5/6 kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-85832798-2	chr15	85832698	85832898	+	906.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033337, intron 1 of 13)	intron (NM_001033337, intron 1 of 13)	494.0	NM_001033337	239570.0	Mm.151748	NM_001033337	ENSMUSG00000035944	Ttc38	9030019H09	tetratricopeptide repeat domain 38	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-121986685-2	chr7	121986585	121986785	+	969.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_028758)	TTS (NM_028758)	-4992.0	NM_001033318	233824.0	Mm.442015	NM_001033318	ENSMUSG00000034951	Cog7	5630400E24Rik|Gm167	component of oligomeric golgi complex 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-20826139-3	chr14	20826034	20826234	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-10528.0	NM_008873	18792.0	Mm.4183	NM_008873	ENSMUSG00000021822	Plau	u-PA|uPA	plasminogen activator, urokinase	protein-coding	2.63415280482551	2.75690788000345	1.43525576359944	1.65983253349702	3.13922785800306	2.37879266930238	3.13078515649387	2.88007375936402	1.3161943973515	0.11829478643979	0.539658116997945
Merged-chr16-22300166-4	chr16	22300071	22300271	+	787.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5183.0	NR_153764	100043507.0		NR_153764		Gng5-ps	Gm15776	G protein subunit gamma 5, pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-63499151-2	chr4	63499051	63499251	+	589.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-3160.0	NM_001008791	73750.0	Mm.300397	NM_028640	ENSMUSG00000039137	Whrn	1110035G07Rik|AW122018|AW742671|C430046P22Rik|Dfnb31|Ush2d|wi	whirlin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-75103658-5	chr8	75103550	75103750	+	721.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17A2|LTR|ERVK	-5859.0	NM_001302540	17218.0	Mm.5048	NM_008566	ENSMUSG00000005410	Mcm5	AA617332|AI324988|AL033333|Cdc46|Mcmd5|P1-CDC46	minichromosome maintenance complex component 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-7826756-2	chr9	7826656	7826856	+	662.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007465, intron 3 of 7)	B4A|SINE|B4	10050.0	NM_001291503	11797.0	Mm.335659	NM_007465	ENSMUSG00000057367	Birc2	AW146227|Api1|Api2|Birc3|C-IAP1|C330006D17Rik|HIAP1|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF48|cIAP1|cIAP2|mcIAP1	baculoviral IAP repeat-containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-176819508-3	chr1	176819400	176819600	+	882.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357390, intron 1 of 18)	intron (NM_001357390, intron 1 of 18)	4840.0	NM_029756	76816.0	Mm.171399	NM_029756	ENSMUSG00000026504	Sdccag8	2700048G21Rik|5730470G24Rik|Cccap	serologically defined colon cancer antigen 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-17393129-3	chr16	17393055	17393255	+	924.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001983, intron 1 of 54)	intron (NM_001001983, intron 1 of 54)	-12845.0	NM_023348	67474.0	Mm.271992	NM_023348	ENSMUSG00000022765	Snap29	1300018G05Rik|AI891940|AU020222|BB131856|Gs32	synaptosomal-associated protein 29	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-24923630-3	chr8	24923518	24923718	+	683.311096	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153397, intron 3 of 21)	intron (NM_153397, intron 3 of 21)	25186.0	NM_001293693	353188.0	Mm.269223	NM_153397	ENSMUSG00000037437	Adam32	-	a disintegrin and metallopeptidase domain 32	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-85518639-2	chr3	85518539	85518739	+	553.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51262.0	NR_130326	100316670.0		NR_130326	ENSMUSG00000080424	Mir466k	Mirn466k|mmu-mir-466k	microRNA 466k	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-37913292-3	chr13	37913197	37913397	+	961.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039188, intron 6 of 9)	intron (NM_001039188, intron 6 of 9)	24426.0	NM_001177869	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-77309508-4	chr2	77309425	77309625	+	995.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28933.0	NM_175465	228071.0	Mm.27120	NM_175465	ENSMUSG00000042272	Sestd1	1500031J16Rik|A930010O20|Solo/Trio8	SEC14 and spectrin domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85455350-4	chr12	85455245	85455445	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-18545.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-15998332-3	chr19	15998234	15998434	+	783.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045355, intron 2 of 2)	intron (NR_045355, intron 2 of 2)	13259.0	NR_045355	100502653.0	Mm.149980	NR_045355	ENSMUSG00000097557	C130060C02Rik	-	RIKEN cDNA C130060C02 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-90933709-2	chr16	90933609	90933809	+	719.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026502, intron 1 of 6)	MTD|LTR|ERVL-MaLR	1140.0	NM_026502	68001.0	Mm.45374	NM_026502	ENSMUSG00000022972	1110004E09Rik	-	RIKEN cDNA 1110004E09 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-88745531-4	chr15	88745412	88745612	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT2D|LTR|ERVL	-6199.0	NM_181412	223773.0	Mm.396622	NM_181412	ENSMUSG00000034333	Zbed4	1700009F06Rik	zinc finger, BED type containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-120353060-2	chr9	120352960	120353160	+	637.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144557, intron 2 of 16)	intron (NM_144557, intron 2 of 16)	48987.0	NM_144557	245049.0	Mm.100936	NM_144557	ENSMUSG00000041794	Myrip	A230081N12Rik|Slac2-c|Slac2c	myosin VIIA and Rab interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-81351666-4	chr13	81351546	81351746	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 83 of 89)	intron (NM_054053, intron 83 of 89)	281498.0	NM_054053	110789.0	Mm.288694	NM_054053	ENSMUSG00000069170	Adgrv1	Frings|Gpr98|Mass1|Mgr1|VLGR1	adhesion G protein-coupled receptor V1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-55386622-4	chr11	55386536	55386736	+	960.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33444.0	NM_009242	20692.0	Mm.291442	NM_009242	ENSMUSG00000018593	Sparc	BM-40|ON	secreted acidic cysteine rich glycoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-74833921-2	chr11	74833821	74834021	+	902.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010813, intron 1 of 5)	intron (NM_010813, intron 1 of 5)	2997.0	NM_010813	17428.0	Mm.3759	NM_010813	ENSMUSG00000000282	Mnt	Rox|bHLHd3	max binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-104481511-4	chr3	104481416	104481616	+	995.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025067, intron 9 of 17)	intron (NM_001025067, intron 9 of 17)	30402.0	NM_001025067	269473.0	Mm.34855	NM_001025067	ENSMUSG00000032913	Lrig2	4632419I10Rik|BB096938|LIG-2	leucine-rich repeats and immunoglobulin-like domains 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-4199029-4	chr11	4198954	4199154	+	904.2291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134023, intron 1 of 8)	MIRc|SINE|MIR	12221.0	NM_134023	103724.0	Mm.28140	NM_134023	ENSMUSG00000034412	Tbc1d10a	AI447804|EPI64|Tbc1d10|mFLJ00288	TBC1 domain family, member 10a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-28963978-4	chr19	28963886	28964086	+	976.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028922)	promoter-TSS (NM_028922)	66.0	NM_028922	74411.0	Mm.441887	NM_028922	ENSMUSG00000040105	Plpp6	4932443D16Rik|Ppapdc2	phospholipid phosphatase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-101625899-2	chr3	101625799	101625999	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-21192.0	NM_144900	11928.0	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-144695470-4	chr3	144695384	144695584	+	911.133301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001282037, intron 9 of 10)	intron (NM_001282037, intron 9 of 10)	24851.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-114628307-2	chr5	114628207	114628407	+	873.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_022017, intron 12 of 15)	RSINE1|SINE|B4	30114.0	NM_022017	63873.0	Mm.266450	NM_022017	ENSMUSG00000014158	Trpv4	0610033B08Rik|OTRPC4|Trp12|VR-OAC|VRL-2|VROAC	transient receptor potential cation channel, subfamily V, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-83860632-1	chr3	83860532	83860732	+	603.0	f1_balb.idr	Intergenic	RMER20C_Mm|LTR|ERVK	-19024.0	NM_011905	24088.0	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	0.910489839917688	2.35562471853536	2.17876755481374	1.67849789289382	0.915484425006796	1.95334704535168	0.967466840414886	1.68819239660045	-1.21684917675393	0.341667851503159	0.842759215970827
Merged-chr16-57552797-3	chr16	57552777	57552977	+	873.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177871, intron 1 of 1)	intron (NM_001177871, intron 1 of 1)	3635.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-29254720-2	chr2	29254620	29254820	+	710.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1727.0	NR_029460	76220.0	Mm.330108	NR_029460	ENSMUSG00000079499	6530402F18Rik	mKIAA1857	RIKEN cDNA 6530402F18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-93332348-3	chr10	93332269	93332469	+	692.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28|LTR|ERVL	-3842.0	NR_038014	432488.0	Mm.32833	NR_038014		Gm17745	Gm3546	predicted gene, 17745	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-5435222-2	chr2	5435122	5435322	+	762.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_030601, intron 1 of 1)	RMER21A|LTR|ERV1	55832.0	NR_030601	100124465.0		NR_030601	ENSMUSG00000078031	Mir466d	Mirn466d	microRNA 466d	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-107150620-4	chr8	107150554	107150754	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025558)	promoter-TSS (NM_025558)	-7.0	NM_025558	66427.0	Mm.20242	NM_025558	ENSMUSG00000031924	Cyb5b	1810044O22Rik|AU015618|Cyb5m	cytochrome b5 type B	protein-coding	2.2246823098874	1.75841948998495	1.69995602403157	1.50059086669369	1.44264974587161	1.14939743330369	1.85338474010419	2.36322741716881	-0.0838031286409902	0.938539241415109	0.998431161219273
Merged-chr8-126860816-2	chr8	126860716	126860916	+	658.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	11796.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-123925453-4	chr9	123925323	123925523	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	43269.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-154898629-2	chr4	154898529	154898729	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_025582, exon 2 of 7)	exon (NM_025582, exon 2 of 7)	414.0	NM_025582	66469.0	Mm.41868	NM_025582	ENSMUSG00000029059	Fam213b	2810405K02Rik|AI836168|PM/PGFS	family with sequence similarity 213, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120579506-2	chr11	120579406	120579606	+	930.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133796, intron 5 of 5)	intron (NM_133796, intron 5 of 5)	2114.0	NM_133796	192662.0	Mm.30016	NM_133796	ENSMUSG00000025132	Arhgdia	5330430M07Rik|Gdi-1|Rho-GDI|RhoDGI|RhoGDI-1	Rho GDP dissociation inhibitor (GDI) alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-34096212-4	chr13	34096112	34096312	+	901.275024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_046184, intron 2 of 4)	intron (NR_046184, intron 2 of 4)	17060.0	NR_046184	432745.0	Mm.159104	NR_046184	ENSMUSG00000113591	4930447K03Rik	-	RIKEN cDNA 4930447K03 gene	ncRNA	2.30465879212895	1.97045551531285	2.24187452561487	3.1476741729698	2.32391002059856	1.98435276409021	2.25939221460685	3.1027580908743	-0.0197301004232813	0.981190097935455	0.998431161219273
Merged-chr1-146967669-4	chr1	146967557	146967757	+	939.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	469970.0	NM_001145807	215378.0	Mm.441817	NM_153539	ENSMUSG00000035131	Brinp3	B830045N13Rik|Fam5c	bone morphogenetic protein/retinoic acid inducible neural specific 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-6679182-3	chr11	6679097	6679297	+	970.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18961.0	NR_028586	100041311.0	Mm.388018	NR_028586	ENSMUSG00000086373	Gm11978	-	predicted gene 11978	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-32430889-4	chr16	32430772	32430972	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009981)	promoter-TSS (NM_009981)	-49.0	NM_009981	13026.0	Mm.98775	NM_009981	ENSMUSG00000005615	Pcyt1a	CTalpha|Cctalpha|Ctpct|Cttalpha	phosphate cytidylyltransferase 1, choline, alpha isoform	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-41614707-3	chr13	41614602	41614802	+	591.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163572, intron 1 of 2)	intron (NM_001163572, intron 1 of 2)	8486.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-151576235-4	chr2	151576091	151576291	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145535, intron 1 of 8)	CpG	3568.0	NM_145535	228765.0	Mm.32068	NM_145535	ENSMUSG00000027456	Sdcbp2	-	syndecan binding protein (syntenin) 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-65687158-5	chr18	65686957	65687157	+	797.899048	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_207255, exon 6 of 6)	exon (NM_207255, exon 6 of 6)	-11211.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-56059248-7	chr4	56059193	56059393	+	903.142883	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-526818.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-52304122-4	chr12	52304009	52304209	+	987.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029760, intron 9 of 10)	intron (NM_029760, intron 9 of 10)	176500.0	NR_136881	102638611.0	Mm.363799	NR_136881	ENSMUSG00000111982	Gm35135	-	predicted gene, 35135	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96240374-4	chr3	96240338	96240538	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013549).2	promoter-TSS (NM_013549).2	-64.0	NM_178212	319192.0	Mm.5220	NM_178212	ENSMUSG00000063954	Hist2h2aa2	H2a-614|H2a-615	histone cluster 2, H2aa2	protein-coding	5.25981527583417	4.11857553703946	5.29231742613008	4.87007701881333	1.42347587843128	1.71899137001546	2.94455031200798	3.09373101592094	-3.52716351185595	0.000447845977279392	0.0102153156566505
Merged-chr5-149245634-1	chr5	149245534	149245734	+	665.0	f0_balb.idr	Intergenic	Intergenic	-19370.0	NM_001308462	11690.0	Mm.19844	NM_009663	ENSMUSG00000060063	Alox5ap	Flap	arachidonate 5-lipoxygenase activating protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-125559276-3	chr8	125559215	125559415	+	756.833313	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	intron (NM_001357372, intron 1 of 21)	intron (NM_001357372, intron 1 of 21)	10548.0	NM_001357372	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	2.59195624600295	2.61151573712808	1.11788918639805	1.88841145274391	2.79125896287598	2.04044664817702	1.12519795430953	1.09631103045527	-0.449950511367365	0.702439418505761	0.998431161219273
Merged-chr12-3695892-3	chr12	3695778	3695978	+	909.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162465, intron 9 of 17)	intron (NM_001162465, intron 9 of 17)	-111102.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-86807147-3	chr11	86807055	86807255	+	864.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026191, intron 1 of 17)	intron (NM_026191, intron 1 of 17)	505.0	NM_026191	67487.0	Mm.260627	NM_026191	ENSMUSG00000018425	Dhx40	2410016C14Rik|ARG147|DDX40|PAD	DEAH (Asp-Glu-Ala-His) box polypeptide 40	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4228484-4	chr19	4228410	4228610	+	921.3624880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132308, intron 2 of 3)	intron (NR_132308, intron 2 of 3)	-3383.0	NM_027196	69745.0	Mm.32518	NM_027196	ENSMUSG00000024854	Pold4	2410012M21Rik|AI463381|AW060307|Polds|p12	polymerase (DNA-directed), delta 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-11205197-4	chr2	11205101	11205301	+	851.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008859, intron 1 of 17)	MTD|LTR|ERVL-MaLR	32819.0	NM_008859	18761.0	Mm.329993	NM_008859	ENSMUSG00000026778	Prkcq	A130035A12Rik|AW494342|PKC-0|PKC-theta|PKCtheta|Pkcq	protein kinase C, theta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-93555310-4	chr3	93555179	93555379	+	882.525024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009112, intron 1 of 2)	CpG	162.0	NM_009112	20194.0	Mm.1	NM_009112	ENSMUSG00000041959	S100a10	42C|AA409961|AL024248|CAL12|CLP11|Cal1l|p10|p11	S100 calcium binding protein A10 (calpactin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-52006451-1	chr14	52006351	52006551	+	613.0	f1_c57bl6.idr	TTS (NM_198249)	TTS (NM_198249)	8107.0	NM_001253695	69890.0	Mm.475652	NM_027248	ENSMUSG00000049295	Zfp219	2010302A17Rik|Znf219	zinc finger protein 219	protein-coding	2.40148973101462	1.49113255335821	2.06891213156841	1.41948940065087	2.02559913949722	1.49996094323879	1.95969202735113	2.39859266260932	0.238649661689704	0.813633051149102	0.998431161219273
Merged-chr3-95626147-2	chr3	95626047	95626247	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001026212, intron 1 of 2)	intron (NM_001026212, intron 1 of 2)	1167.0	NM_001026212	56205.0	Mm.241365	NM_019561	ENSMUSG00000038619	Ensa	1700020C18Rik|2610007F17Rik|AI451924	endosulfine alpha	protein-coding	-1.7024385483431	-1.81249224917775	-1.82134771053534	-1.82862185015837	-1.70038292649591	-1.81057323376012	-1.81934302819017	-1.82731978264371	0.0376840119903864	0.991491645451152	1
Merged-chr16-58523181-4	chr16	58523066	58523266	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_018784, exon 1 of 11)	5' UTR (NM_018784, exon 1 of 11)	260.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-69023533-4	chr8	69023434	69023634	+	831.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	AT_rich|Low_complexity|Low_complexity	-65202.0	NM_007509	11966.0	Mm.249096	NM_007509	ENSMUSG00000006273	Atp6v1b2	AI194269|AI790362|Atp6b2|HO57|R74844	ATPase, H+ transporting, lysosomal V1 subunit B2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-82823861-2	chr18	82823761	82823961	+	680.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32036.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-130491003-4	chr2	130490916	130491116	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355161, intron 1 of 21)	intron (NM_001355161, intron 1 of 21)	40738.0	NM_001355161	19262.0	Mm.224246	NM_008980	ENSMUSG00000027303	Ptpra	Ptpa|Ptpalpha|Rptpalpha|Rptra|Rptralpha	protein tyrosine phosphatase, receptor type, A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-8926142-2	chr3	8926042	8926242	+	800.571411	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001025261)	TTS (NM_001025261)	-2285.0	NM_025434	66230.0	Mm.38460	NM_025434	ENSMUSG00000040269	Mrps28	1500012D08Rik|AW061224	mitochondrial ribosomal protein S28	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-95260213-1	chr11	95260113	95260313	+	625.0	f1_balb.idr	Intergenic	Intergenic	-1316.0	NM_053093	93670.0	Mm.40085	NM_053093	ENSMUSG00000020872	Tac4	AW489379|PPT-C	tachykinin 4	protein-coding	0.129549843733633	0.00581117172520815	0.000658334935064453	-0.00331246408928204	0.628759017286461	0.496524388726133	0.00179421813933139	0.297831854259083	3.13896633608383	0.13844664771346	1
Merged-chr2-131177606-2	chr2	131177506	131177706	+	567.75	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007682, exon 1 of 1)	3' UTR (NM_007682, exon 1 of 1)	2461.0	NM_007682	12616.0	Mm.440169	NM_007682	ENSMUSG00000068267	Cenpb	CENP-B	centromere protein B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-34244236-3	chr19	34244167	34244367	+	908.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007392, intron 7 of 8)	intron (NM_007392, intron 7 of 8)	11106.0	NM_007392	11475.0	Mm.213025	NM_007392	ENSMUSG00000035783	Acta2	0610041G09Rik|Actvs|SMAalpha|SMalphaA|a-SMA|alphaSMA	actin, alpha 2, smooth muscle, aorta	protein-coding	5.25976972505915	5.05730036992129	3.37886761015241	4.72078699006994	3.75346960933589	3.16193025921138	1.78688449067926	3.81142626380132	-1.89882938859042	0.00112594068531059	0.021330057382668
Merged-chr5-134377666-2	chr5	134377566	134377766	+	552.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081462, intron 20 of 29)	B1_Mur1|SINE|Alu	51212.0	NR_039544	100628570.0		NR_039544	ENSMUSG00000093311	Mir3965	mmu-mir-3965|mu-mir-3965	microRNA 3965	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-53904033-4	chr19	53903909	53904109	+	960.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168491, intron 1 of 11)	CpG	658.0	NM_001168491	18569.0	Mm.1605	NM_011050	ENSMUSG00000024975	Pdcd4	D19Ucla1|Ma3|Tis	programmed cell death 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55596766-2	chr14	55596666	55596866	+	769.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_194346, exon 11 of 21)	exon (NM_194346, exon 11 of 21)	5024.0	NM_194346	268749.0	Mm.23748	NM_194346	ENSMUSG00000047098	Rnf31	AL033293|BC031509|Flj10111|HOIP|Paul|mFLJ00217	ring finger protein 31	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-12204614-4	chr13	12204494	12204694	+	628.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081128, intron 24 of 32)	intron (NM_001081128, intron 24 of 32)	-18106.0	NR_045170	328186.0	Mm.188154	NM_183202		Gm10336	B330003H21	predicted gene 10336	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-23067751-2	chr2	23067651	23067851	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028793)	promoter-TSS (NM_028793)	-450.0	NR_149742	74159.0	Mm.181973	NM_028793	ENSMUSG00000026781	Acbd5	1300014E15Rik	acyl-Coenzyme A binding domain containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67190445-3	chr10	67190355	67190555	+	792.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207221, intron 3 of 25)	B3|SINE|B2	4705.0	NM_001242396	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114734609-1	chr11	114734509	114734709	+	754.0	f1_c57bl6.idr	exon (NM_001034878, exon 3 of 13)	exon (NM_001034878, exon 3 of 13)	7197.0	NM_001034878	432611.0	Mm.212764	NM_001034878	ENSMUSG00000034706	Dnaic2	C030015H18Rik|Dnai2|Gm728|b2b3405Clo	dynein, axonemal, intermediate chain 2	protein-coding	-0.614396344481327	0.551843571174625	-0.602729847524026	-0.607075942843264	-0.430720237882536	-0.595921239132547	-0.601495959602631	-0.606313307467801	-2.94366377588233	0.263055040872249	1
Merged-chr10-44460295-4	chr10	44460202	44460402	+	994.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1554.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-122099314-4	chr7	122099201	122099401	+	875.591675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153798, intron 1 of 3)	intron (NR_153798, intron 1 of 3)	2547.0	NR_153798	70316.0	Mm.3014	NM_028177	ENSMUSG00000030869	Ndufab1	2210401F17Rik|2310039H15Rik|2610003B19Rik|8kDa|9130423F15Rik|ACP|CI-SDAP|SDAP	NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-10856129-1	chr13	10856029	10856229	+	588.0	f1_c57bl6.idr	Intergenic	Intergenic	-495326.0	NM_033269	12671.0	Mm.342315	NM_033269	ENSMUSG00000046159	Chrm3	Chrm-3|M3|M3R	cholinergic receptor, muscarinic 3, cardiac	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-81780760-3	chr12	81780669	81780869	+	915.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177395, exon 1 of 8)	exon (NM_177395, exon 1 of 8)	401.0	NM_177395	338372.0	Mm.35284	NM_177395	ENSMUSG00000042724	Map3k9	E130314H24Rik|Mlk1|Prke1	mitogen-activated protein kinase kinase kinase 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-44756221-4	chr4	44756113	44756313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138590)	promoter-TSS (NM_138590)	-346.0	NM_138590	319885.0	Mm.331576	NM_138590	ENSMUSG00000035649	Zcchc7	4930572I07Rik|D4Wsu132e	zinc finger, CCHC domain containing 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-88530704-2	chr17	88530607	88530807	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028658, intron 1 of 21)	intron (NM_028658, intron 1 of 21)	583.0	NM_028658	73825.0	Mm.271817	NM_028658	ENSMUSG00000034709	Ppp1r21	1110018J12Rik|AI426045|AW550781|Ccdc128|Klraq1	protein phosphatase 1, regulatory subunit 21	protein-coding	0.212971739654069	0.0957305514911098	0.515707777613378	0.0870193976230215	0.334222754750836	0.433699163164141	0.524756179990562	0.0876796511590724	0.884647029092108	0.651317073697532	1
Merged-chr8-117074711-3	chr8	117074608	117074808	+	661.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029686, intron 4 of 42)	intron (NM_029686, intron 4 of 42)	7741.0	NM_029686	76645.0	Mm.159753	NM_029686	ENSMUSG00000034416	Pkd1l2	1700126L06Rik	polycystic kidney disease 1 like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-128595123-4	chr8	128595011	128595211	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-90543.0	NM_010578	16412.0	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	4.24686586349354	4.99020542564446	4.62923344220473	3.79570809119063	4.78106535755392	4.60589634683437	5.0585822433886	4.16168141586196	0.266144508939024	0.513447974738006	0.94619324199876
Merged-chr7-142967649-3	chr7	142967539	142967739	+	831.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008554, intron 2 of 2)	CpG	1625.0	NM_008554	17173.0	Mm.196417	NM_008554	ENSMUSG00000009248	Ascl2	2410083I15Rik|Mash2|bHLHa45	achaete-scute family bHLH transcription factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-162548554-4	chr1	162548449	162548649	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144877)	promoter-TSS (NM_144877)	-204.0	NM_144877	71449.0	Mm.270569	NM_144877	ENSMUSG00000026694	Mettl13	5630401D24Rik	methyltransferase like 13	protein-coding	6.85985806530064	6.78472629921825	6.58502148848657	6.57906084266595	6.89118237212637	6.45750996463672	6.52074154958318	6.62980749956661	-0.0719946903634645	0.706391499746569	0.998431161219273
Merged-chr10-121519885-2	chr10	121519785	121519985	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43635.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-137075758-4	chr5	137075647	137075847	+	811.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3475.0	NM_008871	18787.0	Mm.250422	NM_008871	ENSMUSG00000037411	Serpine1	PAI-1|PAI1|Planh1	serine (or cysteine) peptidase inhibitor, clade E, member 1	protein-coding	1.3330101361233	2.61451616333145	2.52442402575741	2.83837015313651	3.16363702211594	1.76254228586505	2.85638937905229	2.57487314686753	0.4942073062953	0.576746414883143	0.965638056873227
Merged-chr7-27342765-3	chr7	27342694	27342894	+	913.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138676, intron 16 of 17)	intron (NM_138676, intron 16 of 17)	-5182.0	NM_175641	108075.0	Mm.272251	NM_175641	ENSMUSG00000040488	Ltbp4	2310046A13Rik	latent transforming growth factor beta binding protein 4	protein-coding	2.20470295483208	2.22998467975874	2.0481839105169	1.98656300139818	1.23884994900537	1.56885016681291	1.0849970686596	1.28936373538892	-2.78921534006486	0.0139452605467758	0.138124850886254
Merged-chr1-139503741-2	chr1	139503641	139503841	+	930.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_031164, intron 1 of 11)	intron (NM_031164, intron 1 of 11)	2034.0	NM_031164	14060.0	Mm.30105	NM_031164	ENSMUSG00000026368	F13b	Cf-13b|Cf13b	coagulation factor XIII, beta subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-120067417-1	chr10	120067317	120067517	+	583.0	f1_balb.idr	intron (NM_001358809, intron 22 of 23)	MTD|LTR|ERVL-MaLR	45548.0	NM_080446	117599.0	Mm.214703	NM_080446	ENSMUSG00000020228	Helb	AI447783|D10Ertd664e	helicase (DNA) B	protein-coding	0.680305932718514	1.05688211530102	0.881727257722198	0.976755964430669	1.19859384650761	0.925590939601323	0.553341210173745	0.546250765064424	-0.309805935851819	0.841900628290486	1
Merged-chr6-87451636-3	chr6	87451519	87451719	+	909.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22625.0	NM_009756	12154.0	Mm.483321	NM_009756	ENSMUSG00000030046	Bmp10	b2b2711Clo	bone morphogenetic protein 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-27123714-4	chr14	27123622	27123822	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20271.0	NM_001289686	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	5.25547965576722	5.56928286254721	4.83353680754251	4.75018319509586	5.14318951726564	4.97540434933543	3.6283335062484	5.1624810033399	-0.337852583010916	0.382848932863108	0.873853298598916
Merged-chr4-150237134-4	chr4	150237059	150237259	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001025388).2	promoter-TSS (NM_001025388).2	-38.0	NM_023119	13806.0	Mm.70666	NM_023119	ENSMUSG00000063524	Eno1	0610008I15|AL022784|Eno-1|MBP-1	enolase 1, alpha non-neuron	protein-coding	4.42839973330874	4.83758136051068	5.19140869278113	3.46935499696248	5.1046752757432	5.37967992516761	4.76711962352115	5.54503654631805	0.741634830468484	0.0603187991341972	0.363184151227216
Merged-chr4-87368271-4	chr4	87368192	87368392	+	954.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-137752.0	NM_172426	76376.0	Mm.490487	NM_172426	ENSMUSG00000037996	Slc24a2	2810021B17Rik|6330417K15Rik|AI847460|Nckx2	solute carrier family 24 (sodium/potassium/calcium exchanger), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-85716197-2	chr15	85716097	85716297	+	952.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8878.0	NR_029727	387245.0		NR_029727	ENSMUSG00000065564	Mirlet7b	Mirnlet7b|let-7b|mmu-let-7b	microRNA let7b	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-43786773-4	chr5	43786667	43786867	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	-4618.0	NM_178729	242960.0	Mm.25794	NM_178729	ENSMUSG00000039753	Fbxl5	Fbl4|Fir4	F-box and leucine-rich repeat protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55105744-4	chr14	55105616	55105816	+	767.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007455, intron 2 of 21)	PB1D9|SINE|Alu	877.0	NM_001303502	11766.0	Mm.238879	NM_007455	ENSMUSG00000040701	Ap1g2	Adtg2|G2ad	adaptor protein complex AP-1, gamma 2 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-56564851-1	chr18	56564751	56564951	+	640.0	f1_balb.idr	intron (NM_001162989, intron 1 of 4)	RSINE1|SINE|B4	2282.0	NM_001162989	56698.0	Mm.214569	NM_019996	ENSMUSG00000008301	Phax	2810055C14Rik|4933427L19Rik|AU018701|AU018854|D18Ertd65e|Rnuxa|p55	phosphorylated adaptor for RNA export	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-19785318-2	chr8	19785218	19785418	+	854.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001270553, intron 6 of 9)	intron (NM_001270553, intron 6 of 9)	55742.0	NM_001039553	626415.0	Mm.425517	NM_001039553	ENSMUSG00000096265	4930467E23Rik	TSAP	RIKEN cDNA 4930467E23 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33573933-4	chr16	33573830	33574030	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083902, intron 4 of 11)	MIR3|SINE|MIR	55335.0	NM_001083902	171286.0	Mm.35253	NM_134251	ENSMUSG00000035506	Slc12a8	CCC9|E330020C02Rik	solute carrier family 12 (potassium/chloride transporters), member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-156863975-4	chr2	156863882	156864082	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026124, intron 1 of 3)	intron (NM_026124, intron 1 of 3)	860.0	NM_026124	67388.0	Mm.29264	NM_026124	ENSMUSG00000027637	1110008F13Rik	AI316789	RIKEN cDNA 1110008F13 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-23576167-3	chr13	23576069	23576269	+	999.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_178204)	TTS (NM_178204)	406.0	NM_178204	319149.0	Mm.347699	NM_178204	ENSMUSG00000099583	Hist1h3d	H3-b	histone cluster 1, H3d	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-99109800-4	chr9	99109709	99109909	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029094, intron 2 of 23)	intron (NM_029094, intron 2 of 23)	30402.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81022623-2	chr15	81022528	81022728	+	566.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001082536, intron 5 of 13)	intron (NM_001082536, intron 5 of 13)	44863.0	NM_134091	105835.0	Mm.274943	NM_134091	ENSMUSG00000042303	Sgsm3	1810012I01Rik|AI428557|BB175482|Cip85|R75178|RUSC3|Rutbc3	small G protein signaling modulator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-121488836-4	chr10	121488731	121488931	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12581.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	6.49492415047742	5.94281859411699	6.56091568925121	6.00762782246401	6.58987130231905	7.08827447582213	6.88366708306504	6.54225437526492	0.540989056094772	0.0140950675595213	0.138964277090121
Merged-chr12-75733876-12	chr12	75733787	75733987	+	829.145813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030750, intron 1 of 2)	intron (NM_030750, intron 1 of 2)	1842.0	NM_030750	81535.0	Mm.280199	NM_030750	ENSMUSG00000021054	Sgpp1	AI463453|SPP|SPP1|Spph1	sphingosine-1-phosphate phosphatase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76783823-4	chr15	76783779	76783979	+	801.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198420, intron 1 of 10)	intron (NM_198420, intron 1 of 10)	34291.0	NM_001168288	223666.0	Mm.322931	NM_198420	ENSMUSG00000033697	Arhgap39	9530053N22|AI843066|D15Wsu169e|Kiaa1688|Porf-2	Rho GTPase activating protein 39	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-73110121-3	chr11	73110081	73110281	+	670.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361245, intron 2 of 30)	intron (NM_001361245, intron 2 of 30)	19586.0	NM_172944	16407.0	Mm.96	NM_008399	ENSMUSG00000005947	Itgae	A530055J10|CD103|aM290|alpha-E1|alpha-M290	integrin alpha E, epithelial-associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-73633873-2	chr15	73633773	73633973	+	714.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9129.0	NM_001033219	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-56228831-4	chr10	56228727	56228927	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033385)	promoter-TSS (NM_001033385)	-138.0	NM_001033385	544696.0	Mm.411188	NM_001033385	ENSMUSG00000038122	Tbc1d32	Bromi|C6orf170|D630037F22Rik|b2b2284Clo	TBC1 domain family, member 32	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-56865296-4	chr4	56865202	56865402	+	866.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018761)	promoter-TSS (NM_018761)	-91.0	NM_018761	54366.0	Mm.218891	NM_018761	ENSMUSG00000038816	Ctnnal1	ACRP|AI616177|AW545119|C86009|Catnal1	catenin (cadherin associated protein), alpha-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-45740429-2	chr17	45740329	45740529	+	642.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_152153, intron 1 of 4)	intron (NR_152153, intron 1 of 4)	5923.0	NR_152153	433111.0	Mm.213441	NR_152153	ENSMUSG00000097727	F630040K05Rik	-	RIKEN cDNA F630040K05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-48788832-4	chr11	48788734	48788934	+	982.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11526.0	NM_008143	14694.0	Mm.5305	NM_008143	ENSMUSG00000020372	Rack1	AL033335|GB-like|Gnb2-rs1|Gnb2l1|p205	receptor for activated C kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-6260500-4	chr15	6260396	6260596	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39293.0	NM_001008702	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-26022959-3	chr18	26022873	26023073	+	900.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M5|LINE|L1	-268816.0	NM_001362334	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-105901710-4	chr11	105901601	105901801	+	976.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181071, intron 17 of 25)	intron (NM_181071, intron 17 of 25)	42786.0	NM_007805	13056.0	Mm.149403	NM_007805	ENSMUSG00000019590	Cyb561	-	cytochrome b-561	protein-coding	3.13365620761631	2.70159665889544	2.09756116676629	3.60807003174559	2.75195185327084	3.60378358771243	2.11484624021388	3.24341214451131	0.0546977748230268	0.940437164321946	0.998431161219273
Merged-chr5-117890843-4	chr5	117890710	117890910	+	980.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008712, intron 2 of 27)	C-rich|Low_complexity|Low_complexity	23971.0	NM_008712	18125.0	Mm.44249	NM_008712	ENSMUSG00000029361	Nos1	2310005C01Rik|N-NOS|NC-NOS|NO|NOS|NOS-I|Nos-1|bNOS|nNOS	nitric oxide synthase 1, neuronal	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-64126039-2	chr14	64125921	64126121	+	894.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253715, intron 4 of 4)	intron (NM_001253715, intron 4 of 4)	21698.0	NM_028525	73382.0	Mm.481055	NM_028525	ENSMUSG00000021966	Prss52	1700049K14Rik|Tesp3	protease, serine 52	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-58623642-3	chr15	58623531	58623731	+	741.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	199796.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81021126-2	chr10	81021026	81021226	+	739.25	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_145217, exon 2 of 2)	3' UTR (NM_145217, exon 2 of 2)	4251.0	NM_145217	208666.0	Mm.44995	NM_145217	ENSMUSG00000043670	Diras1	Di-Ras1|Gbts1|RIG	DIRAS family, GTP-binding RAS-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-17954235-4	chr14	17954126	17954326	+	845.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113417, intron 3 of 9)	intron (NM_001113417, intron 3 of 9)	-27418.0	NM_009380	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111693463-4	chr12	111693426	111693626	+	777.229187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15421.0	NM_177374	328162.0	Mm.425747	NM_177374	ENSMUSG00000060950	Trmt61a	6720458F09Rik|AI606093|Gcd14|Trm61	tRNA methyltransferase 61A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19286914-2	chr7	19286814	19287014	+	563.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_013648, exon 3 of 10)	exon (NM_013648, exon 3 of 10)	-4155.0	NM_001025364	20167.0	Mm.24142	NM_013648	ENSMUSG00000030401	Rtn2	MMS10-P|Ms10p|NSPLI|Nspl1	reticulon 2 (Z-band associated protein)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-13358993-4	chr12	13358917	13359117	+	872.883301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027706, intron 23 of 51)	intron (NM_027706, intron 23 of 51)	89890.0	NM_027706	71169.0	Mm.177520	NM_027706	ENSMUSG00000020576	Nbas	4933425L03Rik|Nag	neuroblastoma amplified sequence	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-94377221-4	chr8	94377113	94377313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9216.0	NM_001357205	64209.0	Mm.29151	NM_022331	ENSMUSG00000031770	Herpud1	Herp|Mifl|SUP	homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-84028346-2	chr9	84028246	84028446	+	730.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_199195, intron 8 of 10)	intron (NM_199195, intron 8 of 10)	79565.0	NM_199195	12040.0	Mm.12819	NM_199195	ENSMUSG00000032263	Bckdhb	BCKDE1B|BCKDH E1-beta	branched chain ketoacid dehydrogenase E1, beta polypeptide	protein-coding	0.263413097821964	0.766137216154088	0.127109633123247	0.438057906764211	0.114972503400166	0.135051091193387	0.128541605874205	0.871363905233153	-0.332389833260929	0.868823836002103	1
Merged-chr1-191187128-2	chr1	191187028	191187228	+	841.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3795.0	NM_007498	11910.0	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-102584833-4	chr4	102584746	102584946	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019840, intron 6 of 14)	intron (NM_019840, intron 6 of 14)	-2712.0	NM_001177982	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	-1.50578006401468	-1.47341050667617	-1.17515363242603	-1.49124015727368	-1.50350778094084	-1.47128922826211	-1.3269605056278	-1.48980085267657	-0.800720836253042	0.817773358996722	1
Merged-chr15-36500000-4	chr15	36499895	36500095	+	860.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3204.0	NM_175134	68839.0	Mm.396537	NM_175134	ENSMUSG00000048307	Ankrd46	1110054N06Rik|AI314978|AI987733	ankyrin repeat domain 46	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-96400925-4	chr11	96400821	96401021	+	943.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35163.0	NM_008266	15407.0	Mm.890	NM_008266	ENSMUSG00000018973	Hoxb1	Hox-2.9	homeobox B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-90881040-4	chr8	90880931	90881131	+	929.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177224, intron 2 of 39)	intron (NM_177224, intron 2 of 39)	-51218.0	NM_001310530	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	2.78106329911298	1.70607449925318	3.21116069083026	3.20473933114069	3.14274108177396	3.25156927621834	3.61217360652186	3.37240166095348	0.842211113948987	0.210099620169849	0.69949048545273
Merged-chr2-71660828-4	chr2	71660736	71660936	+	837.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_039557, intron 2 of 3).2	Arthur1|DNA|hAT-Tip100	-58581.0	NR_037979	381371.0	Mm.330284	NM_201366	ENSMUSG00000064263	Platr26	Gm1631	pluripotency associated transcript 26	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-80738364-4	chr18	80738255	80738455	+	992.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001201569, intron 28 of 29)	intron (NM_001201569, intron 28 of 29)	-25284.0	NM_001164110	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	3.50944673951317	2.74461310694219	2.48789527551998	3.57423684868205	2.98365025649129	4.42488262666164	2.50971838125145	2.04993730479527	0.263390637067523	0.724812801031419	0.998431161219273
Merged-chr7-19764841-3	chr7	19764756	19764956	+	823.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020486, intron 6 of 14)	intron (NM_020486, intron 6 of 14)	5676.0	NM_020486	57278.0	Mm.29236	NM_020486	ENSMUSG00000002980	Bcam	1200005K12Rik|B-CAM|Gplu|Lu	basal cell adhesion molecule	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19890500-2	chr7	19890400	19890600	+	545.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2535.0	NM_177036	319930.0	Mm.215839	NM_177036	ENSMUSG00000049848	Ceacam19	C130022P09Rik|CEAL1	carcinoembryonic antigen-related cell adhesion molecule 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-130866419-6	chr7	130866363	130866563	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133942, intron 1 of 9)	CpG	739.0	NM_001346515	101476.0	Mm.323554	NM_133942	ENSMUSG00000040268	Plekha1	AA960558|C920009D07Rik|TAPP1	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-85801565-4	chr8	85801453	85801653	+	881.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028007, intron 6 of 17)	B3|SINE|B2	39396.0	NM_028007	71927.0	Mm.61018	NM_028007	ENSMUSG00000031703	Itfg1	2310047C21Rik|AI314457|Cda08|D8Wsu49e	integrin alpha FG-GAP repeat containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-173459687-2	chr1	173459580	173459780	+	820.0	f0_balb.idr|f1_balb.idr	intron (NM_001013779, intron 5 of 8)	CT-rich|Low_complexity|Low_complexity	39076.0	NM_001013779	383619.0	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	1.07205894098249	1.19262032605162	2.29278991906261	1.39339448230636	2.7095072431085	1.74182114066448	3.19748681801009	2.62923307904614	2.53685794407055	0.0146150621673321	0.142484980403833
Merged-chr9-50584830-1	chr9	50584730	50584930	+	638.5	f0_balb.idr	Intergenic	RLTR23|LTR|ERV1	19019.0	NM_025848	66925.0	Mm.10406	NM_025848	ENSMUSG00000000171	Sdhd	3110001M13Rik|AVLL5809|C78570|PRO19626	succinate dehydrogenase complex, subunit D, integral membrane protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132039521-2	chr4	132039421	132039621	+	604.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_183428, intron 1 of 20)	intron (NM_183428, intron 1 of 20)	9557.0	NM_001128606	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-121314246-4	chr9	121314146	121314346	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152160, intron 1 of 17)	intron (NR_152160, intron 1 of 17)	16744.0	NR_152160	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	2.86527424744139	3.24644784804453	4.03611357929431	3.74088805695376	3.70671729526328	4.60077439625669	3.1566240277687	4.11081638809586	0.642753901084597	0.244005729159264	0.741660379611429
Merged-chr8-61526153-2	chr8	61526053	61526253	+	601.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001293772, intron 16 of 21)	intron (NM_001293772, intron 16 of 21)	38419.0	NM_145595	234309.0	Mm.29059	NM_145595	ENSMUSG00000031641	Cbr4	A730083J17Rik|BC009118	carbonyl reductase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46899286-3	chr8	46899183	46899383	+	885.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-87604.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16231578-1	chr7	16231478	16231678	+	616.0	f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-9546.0	NM_027883	71723.0	Mm.75259	NM_027883	ENSMUSG00000006019	Dhx34	1200013B07Rik|1810012L18Rik|Ddx34|mKIAA0134	DEAH (Asp-Glu-Ala-His) box polypeptide 34	protein-coding	0.662530728583982	0.706778633898169	0.692606600883255	1.71763547896855	1.54516092318364	1.44874913938979	0.695757869923089	1.44977162387941	1.01432357214927	0.520243292660272	0.947641799425091
Merged-chr1-82316567-4	chr1	82316474	82316674	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029777)	promoter-TSS (NM_029777)	-5.0	NM_029777	76867.0	Mm.226994	NM_029777	ENSMUSG00000026142	Rhbdd1	4930418P06Rik|RRP4|mRHBDD1	rhomboid domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-92214894-4	chr6	92214798	92214998	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030081)	promoter-TSS (NM_030081)	-87.0	NM_030081	78287.0	Mm.290734	NM_030081	ENSMUSG00000014550	Rbsn	5330426D11Rik|Zfyve20	rabenosyn, RAB effector	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-33964820-3	chr1	33964715	33964915	+	951.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276764, intron 2 of 102)	intron (NM_001276764, intron 2 of 102)	-47010.0	NM_133833	13518.0	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-90276392-4	chr9	90276300	90276500	+	979.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5631.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	3.22038883129023	2.47171170226965	4.81964114614103	4.62796044678963	3.58067722007058	4.92262433579421	3.81213360307882	4.35571034243778	0.207805653941074	0.723700727083064	0.998431161219273
Merged-chr11-97404409-5	chr11	97404309	97404509	+	752.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41858.0	NM_138657	192157.0	Mm.34339	NM_138657	ENSMUSG00000038485	Socs7	2310063P06Rik|C85125|Nap4	suppressor of cytokine signaling 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45469153-2	chr7	45469053	45469253	+	560.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2255.0	NM_007527	12028.0	Mm.19904	NM_007527	ENSMUSG00000003873	Bax	-	BCL2-associated X protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-170932336-3	chr1	170932231	170932431	+	733.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT2B1|LTR|ERVL	-4748.0	NM_001160215	98752.0	Mm.1850	NM_145141	ENSMUSG00000038421	Fcrla	BB219290|FCRL|FCRL1|FREB|Fcrlm1|Fcrx|Freb1|mFREB|mFcrX	Fc receptor-like A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-107672812-2	chr11	107672712	107672912	+	894.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_198298, exon 30 of 32)	exon (NM_198298, exon 30 of 32)	35090.0	NR_105897	102465562.0		NR_105897	ENSMUSG00000098497	Mir6932	Gm27691|mmu-mir-6932	microRNA 6932	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81429765-4	chr10	81429659	81429859	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ZP3AR|Satellite|Satellite	-2586.0	NM_026756	18029.0	Mm.426936	NM_008688	ENSMUSG00000055053	Nfic	1110019L22Rik|1500041O16Rik|AA589446|AI746521|NF1-C	nuclear factor I/C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-138118164-2	chr5	138118064	138118264	+	557.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001044704, intron 2 of 4)	RSINE1|SINE|B4	1259.0	NM_001044705	22697.0	Mm.2760	NM_011757	ENSMUSG00000037017	Zscan21	AI326272|CTfin51|RU49|Zfp-38|Zfp38|Zipro1	zinc finger and SCAN domain containing 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-11092285-4	chr19	11092212	11092412	+	822.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-11209.0	NM_022430	64381.0	Mm.34460	NM_022430	ENSMUSG00000024730	Ms4a8a	2010004L09Rik|AI481240|CD20L5|Ms4a8	membrane-spanning 4-domains, subfamily A, member 8A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-34909169-2	chr19	34909069	34909269	+	702.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-13189.0	NM_001362434	240641.0	Mm.278471	NM_183046	ENSMUSG00000024795	Kif20b	33cex|C330014J10Rik|MPP1|Mphosph1|magoo	kinesin family member 20B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-19077916-1	chr10	19077816	19078016	+	1000.0	f0_balb.idr	Intergenic	Intergenic	-62506.0	NM_009397	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	2.93013039755545	3.50911960753386	3.3954345120814	1.77401391898736	2.59793065339583	3.0298847478437	2.26097665323211	2.7332298965191	-0.681029444446198	0.364229302277684	0.860015055509248
Merged-chr6-3182971-4	chr6	3182832	3183032	+	901.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-105587.0	NR_036696	667335.0	Mm.380219	NR_036696	ENSMUSG00000106779	Gm8579	EG667335	spermatogenesis associated glutamate (E)-rich protein 4a pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132007364-4	chr4	132007263	132007463	+	949.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001128606, exon 2 of 18)	exon (NM_001128606, exon 2 of 18)	41715.0	NM_001128606	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-79150703-4	chr8	79150598	79150798	+	939.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001294279, intron 8 of 14)	intron (NM_001294279, intron 8 of 14)	97885.0	NM_026315	67687.0	Mm.178707	NM_026315	ENSMUSG00000031682	1700011L22Rik	-	RIKEN cDNA 1700011L22 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72116856-3	chr6	72116732	72116932	+	827.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011375, intron 1 of 6)	ORR1B1|LTR|ERVL-MaLR	6108.0	NR_045163	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-13877566-3	chr17	13877468	13877668	+	653.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151731, intron 22 of 33)	intron (NR_151731, intron 22 of 33)	-70805.0	NM_001122977	635895.0	Mm.388844	NM_001122977	ENSMUSG00000067941	Gm7168	EG635895	predicted gene 7168	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-39961122-1	chr5	39961022	39961222	+	852.0	f1_c57bl6.idr	Intergenic	Intergenic	-316491.0	NM_010474	15476.0	Mm.12559	NM_010474	ENSMUSG00000051022	Hs3st1	3-Ost|D5Wsu110e|Hsg3ost	heparan sulfate (glucosamine) 3-O-sulfotransferase 1	protein-coding	3.11454268959672	3.05217914434819	2.27490453910686	2.05016383836277	1.33587107881296	2.98363573958004	2.12911099204808	3.0354205974662	-0.308686383510778	0.725620394974803	0.998431161219273
Merged-chr11-117978037-4	chr11	117977962	117978162	+	911.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8696.0	NM_007707	12702.0	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-118016002-2	chr2	118015902	118016102	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_126479, intron 8 of 9)	ORR1D2|LTR|ERVL-MaLR	95200.0	NR_126479	329496.0	Mm.235844	NR_126479	ENSMUSG00000087203	Gm13986	C230060E24	predicted gene 13986	ncRNA	-1.13129152895393	-0.760314410582534	-1.11939102144509	-1.12796902636669	-1.1307976245896	-0.753160406462703	-1.11683883442949	-1.12699414366937	0.0387695613834025	0.99058038935327	1
Merged-chr2-5844425-2	chr2	5844325	5844525	+	588.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016918)	promoter-TSS (NM_016918)	-609.0	NM_016918	53893.0	Mm.251904	NM_016918	ENSMUSG00000025817	Nudt5	-	nudix (nucleoside diphosphate linked moiety X)-type motif 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-146405101-2	chr3	146404998	146405198	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253769, intron 1 of 13)	intron (NM_001253769, intron 1 of 13)	456.0	NM_001355661	99167.0	Mm.200783	NM_138744	ENSMUSG00000036825	Ssx2ip	AU014939|AU042321|Adip	synovial sarcoma, X 2 interacting protein	protein-coding	2.57396846485397	2.88280028472432	2.08647959844032	2.0304832654547	2.5105222938379	1.98625012358988	2.9705074321834	2.18774158801653	0.0673559940108878	0.934704971172658	0.998431161219273
Merged-chr19-8518443-4	chr19	8518344	8518544	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPLTR3-int|LTR|ERVK	-72810.0	NM_001164634	19879.0	Mm.285294	NM_031194	ENSMUSG00000063796	Slc22a8	Oat3|Roct	solute carrier family 22 (organic anion transporter), member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128864434-1	chr2	128864334	128864534	+	577.0	f1_balb.idr	intron (NM_024237, intron 1 of 7)	intron (NM_024237, intron 1 of 7)	502.0	NM_024237	70370.0	Mm.5107	NM_024237	ENSMUSG00000027386	Fbln7	1600015H20Rik|AI464334|TM14	fibulin 7	protein-coding	1.33687012368318	0.779143112911785	1.47230148544931	1.90466088334501	0.92544980286866	0.782800046845228	1.90754770925482	0.751937491466403	-0.767295292124858	0.593169511207353	0.9706660979479
Merged-chr2-172442274-3	chr2	172442137	172442337	+	863.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025542, intron 1 of 8)	intron (NM_025542, intron 1 of 8)	1659.0	NM_025542	66404.0	Mm.25157	NM_025542	ENSMUSG00000027502	Rtf2	1700067C04Rik|2410001C21Rik|5730427M17Rik|AA589417|Rtfdc1	replication termination factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-106281110-5	chr9	106281042	106281242	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027354)	promoter-TSS (NM_027354)	81.0	NM_027354	70235.0	Mm.23054	NM_027354	ENSMUSG00000023345	Poc1a	2510040D07Rik|Wdr51a|cha	POC1 centriolar protein A	protein-coding	5.0963861183697	4.10946295737485	5.01456125204703	3.85434715277766	5.35395457794731	4.28565245077747	4.60244706634849	3.434354566363	-0.0399192269563042	0.934071630826354	0.998431161219273
Merged-chr5-24530243-4	chr5	24530132	24530332	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3384.0	NM_015739	231044.0	Mm.246596	NM_015739	ENSMUSG00000067724	Gbx1	Gbx-1	gastrulation brain homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-104001180-4	chr11	104001095	104001295	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34324.0	NM_007477	11841.0	Mm.5061	NM_007477	ENSMUSG00000062421	Arf2	-	ADP-ribosylation factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-152197444-4	chr2	152197338	152197538	+	925.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29402.0	NM_007788	12995.0	Mm.23692	NM_007788	ENSMUSG00000074698	Csnk2a1	CK2|Csnk2a1-rs4	casein kinase 2, alpha 1 polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-15035013-3	chr9	15034916	15035116	+	837.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019482, intron 1 of 4)	intron (NM_019482, intron 1 of 4)	10462.0	NM_019482	55991.0	Mm.142253	NM_019482	ENSMUSG00000031934	Panx1	AI847747	pannexin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-10921101-3	chr15	10920990	10921190	+	927.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31242.0	NM_030888	81799.0	Mm.280158	NM_030888	ENSMUSG00000058914	C1qtnf3	2310005P21Rik|CORS-26|CORS26|CTRP3|Corcs|Cors	C1q and tumor necrosis factor related protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-84759863-1	chr2	84759763	84759963	+	654.0	f1_balb.idr	Intergenic	B1F|SINE|Alu	15566.0	NM_009776	12258.0	Mm.38888	NM_009776	ENSMUSG00000023224	Serping1	C1INH|C1nh	serine (or cysteine) peptidase inhibitor, clade G, member 1	protein-coding	0.707209997705745	0.9449929938313	0.778126562232712	0.86881050240151	0.820548048205062	0.474263764979478	0.785619091429715	0.461537196016687	-1.09059836233666	0.495925741484863	1
Merged-chr5-137657225-4	chr5	137657163	137657363	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178162, intron 6 of 11)	RSINE1|SINE|B4	-11549.0	NM_010571	16369.0	Mm.24486	NM_010571	ENSMUSG00000047182	Irs3	AA408304	insulin receptor substrate 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-85995039-3	chr1	85994925	85995125	+	736.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26917.0	NM_001122732	70060.0	Mm.196313	NM_027029	ENSMUSG00000026226	Spata3	1700011N12Rik|1700029H01Rik|4930424D10Rik|Mtsarg1|Tsarg1	spermatogenesis associated 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-165700710-3	chr1	165700587	165700787	+	726.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038846, intron 1 of 5)	intron (NM_001038846, intron 1 of 5)	7407.0	NM_001038846	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-92774975-3	chr1	92774889	92775089	+	930.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56656.0	NM_016696	14733.0	Mm.297976	NM_016696	ENSMUSG00000034220	Gpc1	AI462976	glypican 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-66124272-7	chr2	66124135	66124335	+	947.714294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015736, intron 1 of 10)	CpG	558.0	NM_015736	14425.0	Mm.439760	NM_015736	ENSMUSG00000026994	Galnt3	-	polypeptide N-acetylgalactosaminyltransferase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120673146-7	chr11	120673183	120673383	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026877, intron 1 of 15)	CpG	310.0	NM_026877	68938.0	Mm.294020	NM_026877	ENSMUSG00000025142	Aspscr1	1190006K01Rik|ASPC|ASPCR1|ASPL|ASPS|RCC17|TUG	alveolar soft part sarcoma chromosome region, candidate 1 (human)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-58568478-4	chr4	58568384	58568584	+	973.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14993.0	NM_010336	14745.0	Mm.4772	NM_010336	ENSMUSG00000038668	Lpar1	AI326300|Edg2|Gpcr26|Kdt2|lpA1|vzg-1	lysophosphatidic acid receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-98829039-2	chr15	98828939	98829139	+	621.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_016781, intron 1 of 11)	B1_Mus2|SINE|Alu	2469.0	NM_016781	19082.0	Mm.6670	NM_016781	ENSMUSG00000067713	Prkag1	AA571379|BB036179|Prkaac	protein kinase, AMP-activated, gamma 1 non-catalytic subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-50872793-4	chr17	50872681	50872881	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028162, intron 14 of 21)	intron (NM_028162, intron 14 of 21)	174100.0	NM_001297747	12228.0	Mm.392910	NM_009770	ENSMUSG00000022863	Btg3	ANA|tob5	B cell translocation gene 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59661963-2	chr15	59661863	59662063	+	602.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	13309.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-20004718-4	chr3	20004624	20004824	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080634, intron 14 of 16)	intron (NM_080634, intron 14 of 16)	30586.0	NM_001146324	12807.0	Mm.291533	NM_080634	ENSMUSG00000027615	Hps3	coa	HPS3, biogenesis of lysosomal organelles complex 2 subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-105556949-4	chr4	105556846	105557046	+	683.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA4|LINE|L1	399599.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	-1.84371485578039	-1.81332821174849	-1.82251738371298	-1.83006564316449	-1.84158176955426	-1.81133687985023	-1.5312619047181	-1.82871450833159	1.60090129203521	0.64914985597185	1
Merged-chr13-16124191-2	chr13	16124091	16124291	+	763.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-100768.0	NR_155430	100503142.0	Mm.359204	NR_155430		B230303A05Rik	B230303A05|EG328191	U1 small nuclear ribonucleoprotein 1C pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-11823165-1	chr19	11823065	11823265	+	643.0	f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-3762.0	NR_153434	20908.0	Mm.272264	NM_011502	ENSMUSG00000041488	Stx3	Syn-3	syntaxin 3	protein-coding	2.26598153937153	1.11913889481034	2.47715504409193	2.76425804370168	1.45637051940048	1.12596920127014	1.09495813357415	2.49774036042499	-1.38465856892864	0.236814324253988	0.733553768261449
Merged-chr8-80325412-4	chr8	80325344	80325544	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-168601.0	NM_010369	14934.0	Mm.13123	NM_010369	ENSMUSG00000051839	Gypa	AI853584|CD235a|GPA	glycophorin A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-39674369-2	chr8	39674254	39674454	+	781.5	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-31676.0	NM_001113326	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	1.23309538095241	2.24933312863224	2.43758459549869	2.36507990023121	1.48627712567976	3.04479179307202	3.15659261581247	2.37798049712796	1.07749723834702	0.250292902058702	0.748509191602971
Merged-chr14-34296547-4	chr14	34296449	34296649	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153399, intron 2 of 11)	intron (NR_153399, intron 2 of 11)	13968.0	NR_153399	75698.0	Mm.45406	NM_029389	ENSMUSG00000041471	Fam35a	3110001K24Rik	family with sequence similarity 35, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-147181738-2	chr3	147181638	147181838	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	329371.0	NM_001302957	70892.0	Mm.187793	NM_027594	ENSMUSG00000036745	Ttll7	1110049N09Rik|4921517B04Rik|C630030B20|mTTLL7	tubulin tyrosine ligase-like family, member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-184033629-4	chr1	184033525	184033725	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022019)	promoter-TSS (NM_022019)	373.0	NM_028516	73363.0	Mm.50115	NM_028516	ENSMUSG00000044854	1700056E22Rik	-	RIKEN cDNA 1700056E22 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-101740179-4	chr13	101740072	101740272	+	995.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077495, intron 2 of 15)	intron (NM_001077495, intron 2 of 15)	28045.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-64865543-4	chr16	64865459	64865659	+	839.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	13558.0	NM_178647	106143.0	Mm.10160	NM_178647	ENSMUSG00000054604	Cggbp1	AA960172|AL023996|AW045841	CGG triplet repeat binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-51765225-1	chr9	51765125	51765325	+	679.0	f0_balb.idr	promoter-TSS (NM_175535)	promoter-TSS (NM_175535)	-127.0	NM_175535	244867.0	Mm.400352	NM_175535	ENSMUSG00000053199	Arhgap20	6530403F17Rik|A530023E23Rik|RARhoGAP|mKIAA1391	Rho GTPase activating protein 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-110844400-4	chr7	110844305	110844505	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025999)	promoter-TSS (NM_025999)	-24.0	NM_025999	67150.0	Mm.96867	NM_025999	ENSMUSG00000030788	Rnf141	2610110L04Rik|AA792898|AU022812|ZFP36|ZNF230	ring finger protein 141	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139820210-2	chr5	139820110	139820310	+	697.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5927.0	NM_001161548	231832.0	Mm.482655	NM_144914	ENSMUSG00000036687	Tmem184a	Sdmg1	transmembrane protein 184a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122689665-1	chr5	122689565	122689765	+	574.0	f1_c57bl6.idr	intron (NM_001038845, intron 12 of 12)	B4A|SINE|B4	7068.0	NR_106195	102465902.0		NR_106195	ENSMUSG00000099324	Mir8115	Gm28012|mmu-mir-8115	microRNA 8115	ncRNA	1.0134947380555	1.16510507022515	0.120572920268279	0.113742173717761	0.103950014878428	0.131264136178421	0.338000657114814	0.114941237056376	-3.57708936091957	0.0827924700148998	1
Merged-chr15-76312890-1	chr15	76312790	76312990	+	577.0	f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-5645.0	NM_153122	75475.0	Mm.322738	NM_153122	ENSMUSG00000022562	Oplah	1700010G02Rik	5-oxoprolinase (ATP-hydrolysing)	protein-coding	0.578390861267343	0.239094288073746	0.0470359732071465	0.652571789530124	0.300130600096909	0.0534246625941561	0.0481847737715963	0.043721971146996	-2.40019565453844	0.261293383391803	1
Merged-chr7-122368089-1	chr7	122367989	122368189	+	683.5	f0_balb.idr	intron (NM_001316672, intron 2 of 16)	MLT1O|LTR|ERVL-MaLR	78964.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-48839090-2	chr6	48838990	48839190	+	741.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164208, intron 1 of 6)	L1ME4b|LINE|L1	1898.0	NM_023056	65963.0	Mm.28385	NM_023056	ENSMUSG00000029810	Tmem176b	1810009M01Rik|Clast1|Lr8	transmembrane protein 176B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-70812079-4	chr6	70811982	70812182	+	801.491699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19907.0	NM_009075	19895.0	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-101555409-4	chr6	101555316	101555516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-177519.0	NM_018884	55983.0	Mm.321654	NM_018884	ENSMUSG00000035357	Pdzrn3	1110020C07Rik|AI429718|AL023082|LNX3|SEMACAP3|Semcap3	PDZ domain containing RING finger 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-137836043-5	chr4	137835868	137836068	+	913.56665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26269.0	NM_199307	230857.0	Mm.401062	NM_199307	ENSMUSG00000057530	Ece1	AW322500|ECE-1|ECE-1a|ECE-1b|ECE-1d	endothelin converting enzyme 1	protein-coding	4.36619014726709	4.84251716023327	4.81600610104187	4.61976547053997	4.27184871555927	3.29116396004246	3.88610323879493	4.04524953995363	-0.958912383321913	0.0207439821099366	0.183544467075973
Merged-chr1-172310224-4	chr1	172310142	172310342	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2125.0	NM_080419	140559.0	Mm.271717	NM_080419	ENSMUSG00000038034	Igsf8	ESTM34|EWI-2|KCT-4|PGRL	immunoglobulin superfamily, member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171115644-2	chr1	171115544	171115744	+	743.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6017.0	NM_001081275	75472.0	Mm.32760	NM_029301	ENSMUSG00000026649	Cfap126	1700009P17Rik|AV282292|Flattop|Fltp	cilia and flagella associated protein 126	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-97823205-1	chr16	97823105	97823305	+	600.0	f1_c57bl6.idr	intron (NM_001359078, intron 5 of 22)	intron (NM_001359078, intron 5 of 22)	28022.0	NM_144789	114604.0	Mm.328741	NM_144789	ENSMUSG00000014039	Prdm15	C21orf83|E130018M06Rik|ORF62|Zfp298	PR domain containing 15	protein-coding	-1.18378942727406	-1.15669478905697	-0.457913181653105	-1.17806440097404	-1.18323730008524	-1.15415234459186	-1.16577117532349	-1.17633933179771	-2.81844548480871	0.412768592413622	1
Merged-chr4-41756162-4	chr4	41756015	41756215	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302511)	promoter-TSS (NM_001302511)	-95.0	NM_001302511	14430.0	Mm.439669	NM_016658	ENSMUSG00000036073	Galt	AW553376	galactose-1-phosphate uridyl transferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27690493-2	chr2	27690393	27690593	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011305, intron 1 of 9)	(TG)n|Simple_repeat|Simple_repeat	13292.0	NM_011305	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-149441439-1	chr3	149441339	149441539	+	687.0	f0_balb.idr	Intergenic	Intergenic	166702.0	NR_040591	381482.0	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56288988-2	chr17	56288888	56289088	+	929.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_025836, intron 1 of 7)	B3A|SINE|B2	1523.0	NM_025836	66905.0	Mm.311696	NM_025836	ENSMUSG00000024197	Plin3	1300012C15Rik|M6prbp1|Tip47	perilipin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-168540033-4	chr2	168539941	168540141	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037177, intron 3 of 6)	L2|LINE|L2	50324.0	NM_001291178	18019.0	Mm.116802	NM_010899	ENSMUSG00000027544	Nfatc2	AI607462|NF-ATc2|NF-ATp|NFAT1|NFAT1-D|Nfatp	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-83721277-2	chr8	83721229	83721429	+	741.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_197982, intron 5 of 10)	intron (NM_197982, intron 5 of 10)	2655.0	NR_106188	102465897.0		NR_106188	ENSMUSG00000098465	Mir1668	Gm27590|mmu-mir-1668	microRNA 1668	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-49236527-3	chr6	49236427	49236627	+	900.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	-21573.0	NM_023670	140488.0	Mm.281018	NM_023670	ENSMUSG00000029814	Igf2bp3	2610101N11Rik|AA522010|AL022933|AU045931|IMP-3|IMP3|Koc13|Neilsen|mimp3	insulin-like growth factor 2 mRNA binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153168859-2	chr2	153168759	153168959	+	807.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133847, intron 1 of 17)	intron (NM_133847, intron 1 of 17)	7558.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-76205652-2	chr16	76205552	76205752	+	784.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	83039.0	NR_040575	78215.0	Mm.243885	NR_040575		4930578N18Rik	-	RIKEN cDNA 4930578N18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85396271-2	chr12	85396171	85396371	+	667.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-21554.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-27045242-4	chr14	27045127	27045327	+	843.224976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134437, intron 1 of 12)	intron (NM_134437, intron 1 of 12)	6226.0	NM_134437	171463.0	Mm.206726	NM_027265	ENSMUSG00000040717	Il17rd	2810004A10Rik|AI428510|Sef|Sef-S	interleukin 17 receptor D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-92028283-4	chr16	92028199	92028399	+	900.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30023.0	NM_017391	53881.0	Mm.217354	NM_017391	ENSMUSG00000089774	Slc5a3	AA623876|BF642829|Smit1	solute carrier family 5 (inositol transporters), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-25500238-2	chr5	25500138	25500338	+	1000.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_030700, exon 1 of 1)	non-coding (NR_030700, exon 1 of 1)	441.0	NR_030700	320965.0	Mm.32025	NR_030700		4831440E17Rik	-	RIKEN cDNA 4831440E17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-39470589-1	chr10	39470489	39470689	+	595.5	f0_balb.idr	intron (NM_001122893, intron 3 of 13)	intron (NM_001122893, intron 3 of 13)	100790.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-61128003-5	chr18	61128033	61128233	+	895.093323	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001037859, exon 17 of 22)	exon (NM_001037859, exon 17 of 22)	10665.0	NR_105949	102466212.0		NR_105949	ENSMUSG00000098389	Mir6983	Gm27496|mmu-mir-6983	microRNA 6983	ncRNA	-0.0209796867761453	0.189884884578745	-0.00976585683709486	0.520637899602231	-0.0199377957836467	0.194753193544821	0.674137292592117	-0.013242958597072	0.398828808537431	0.85163501555856	1
Merged-chr10-19691470-1	chr10	19691370	19691570	+	787.0	f0_balb.idr	Intergenic	Intergenic	-21117.0	NM_172786	237313.0	Mm.234667	NM_172786	ENSMUSG00000020007	Il20ra	E230031K19	interleukin 20 receptor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-40073105-2	chr10	40073005	40073205	+	621.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 3 of 5)	B1_Mus2|SINE|Alu	-47837.0	NM_144821	215929.0	Mm.55513	NM_144821	ENSMUSG00000038522	Mfsd4b1	AI317395|AI482555|Naglt1a	major facilitator superfamily domain containing 4B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-33322991-2	chr6	33322891	33323091	+	577.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347089, intron 5 of 9)	ORR1D2|LTR|ERVL-MaLR	73863.0	NM_001347089	20336.0	Mm.265512	NM_009148	ENSMUSG00000029763	Exoc4	C78892|Sec8|Sec8l1	exocyst complex component 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-34347417-3	chr5	34347373	34347573	+	867.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304270, intron 3 of 7)	intron (NM_001304270, intron 3 of 7)	10541.0	NM_001304270	19822.0	Mm.21281	NM_011278	ENSMUSG00000029110	Rnf4	AU018689|Gtrgeo8|SNURF	ring finger protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-34550122-3	chr18	34550031	34550231	+	993.888855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7803.0	NM_009290	20890.0	Mm.558	NM_009290	ENSMUSG00000012282	Wnt8a	Stra11|Wnt-8A|Wnt-8D|Wnt8d	wingless-type MMTV integration site family, member 8A	protein-coding	1.50322731278924	2.06491549618301	1.88306040953321	1.58139414826957	1.51514016409434	1.32967777945789	2.19492553217962	1.0517191898944	-0.508388312902547	0.652729208465865	0.986434615290108
Merged-chr4-141546004-4	chr4	141545896	141546096	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_030695)	promoter-TSS (NR_030695)	-166.0	NR_030695	320456.0	Mm.32859	NM_177163		B330016D10Rik	-	RIKEN cDNA B330016D10 gene	ncRNA	5.89884152500899	5.33591931716209	6.96398506177166	6.89516197481984	6.12810263659668	5.79745780814465	6.08496675651537	6.59723620502406	-0.267888445883431	0.393603962562188	0.882309644749821
Merged-chr8-116991420-2	chr8	116991320	116991520	+	716.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026572, intron 1 of 4)	intron (NM_026572, intron 1 of 4)	2029.0	NM_026572	68133.0	Mm.258462	NM_026572	ENSMUSG00000034424	Gcsh	1100001L02Rik|5730591C18Rik	glycine cleavage system protein H (aminomethyl carrier)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135354532-2	chr4	135354432	135354632	+	658.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-1318.0	NM_001130477	51796.0	Mm.1963	NM_016799	ENSMUSG00000028809	Srrm1	AA407769|POP101|Srm160	serine/arginine repetitive matrix 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-24654471-4	chr18	24654312	24654512	+	894.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026779, intron 1 of 14)	intron (NM_026779, intron 1 of 14)	721.0	NM_026779	68591.0	Mm.28252	NM_026779	ENSMUSG00000039616	Mocos	1110018O12Rik|HMCS|MCS|MOS	molybdenum cofactor sulfurase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3936618-4	chr19	3936512	3936712	+	984.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019449, intron 3 of 10)	intron (NM_019449, intron 3 of 10)	1426.0	NM_001161428	54445.0	Mm.262094	NM_019449	ENSMUSG00000036908	Unc93b1	Unc-93B1|Unc93b	unc-93 homolog B1 (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35237219-2	chr17	35237090	35237290	+	806.916626	f1_balb.idr|f1_c57bl6.idr	exon (NM_001347351, exon 3 of 4)	exon (NM_001347351, exon 3 of 4)	594.0	NM_023179	66237.0	Mm.396107	NM_023179	ENSMUSG00000024403	Atp6v1g2	1500002D01Rik|Atp6g2|NG38|VAG2	ATPase, H+ transporting, lysosomal V1 subunit G2	protein-coding	2.40975091993264	2.71395229441091	2.50693148534359	2.17501781841959	2.07745731894557	2.73447412421793	3.40328611089608	1.37640800634809	0.325014464738574	0.711885758996694	0.998431161219273
Merged-chr5-115349057-4	chr5	115348959	115349159	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007748)	promoter-TSS (NM_007748)	-104.0	NM_007748	12861.0	Mm.43415	NM_007748	ENSMUSG00000041697	Cox6a1	VIaL	cytochrome c oxidase subunit VIa polypeptide 1	protein-coding	6.0979330914799	4.47516164791527	5.57989372032857	6.10448535020958	5.46314355351517	5.26427293490958	5.47665922138561	5.30210832780406	-0.375756785885174	0.259203640401108	0.75927260363863
Merged-chr8-11788500-2	chr8	11788400	11788600	+	889.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_017402, intron 4 of 19)	MTC|LTR|ERVL-MaLR	30170.0	NM_001113518	54126.0	Mm.244068	NM_017402	ENSMUSG00000031511	Arhgef7	Cool|PIX|Pak3bp|betaPix|betaPix-b|betaPix-c|cool-1|mKIAA0142|p85Cool1|p85SPR	Rho guanine nucleotide exchange factor (GEF7)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-38458045-2	chr16	38457945	38458145	+	828.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009855)	promoter-TSS (NM_009855)	-888.0	NM_001359898	12519.0	Mm.89474	NM_009855	ENSMUSG00000075122	Cd80	B71|Cd28l|Ly-53|Ly53|MIC17|TSA1	CD80 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47767844-3	chr17	47767816	47768016	+	782.266663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161723, intron 1 of 8)	intron (NM_001161723, intron 1 of 8)	-17828.0	NM_011549	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-67557372-4	chr3	67557254	67557454	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25414.0	NM_025813	66868.0	Mm.491153	NM_025813	ENSMUSG00000027775	Mfsd1	1200003O06Rik	major facilitator superfamily domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-47771878-2	chr6	47771778	47771978	+	860.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18953.0	NR_002841	19799.0		NR_002841		Rn4.5s	-	4.5S RNA	rRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-44793875-3	chr16	44793770	44793970	+	721.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021325, intron 6 of 6)	intron (NM_021325, intron 6 of 6)	-26858.0	NM_207244	239849.0	Mm.445045	NM_207244	ENSMUSG00000062082	Cd200r4	F630107N04Rik|MCD200RLa	CD200 receptor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-122924163-2	chr6	122924063	122924263	+	584.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_199311, intron 1 of 5)	Lx4A|LINE|L1	2315.0	NM_199311	269799.0	Mm.297275	NM_199311	ENSMUSG00000049037	Clec4a1	BC049354|Dcir4	C-type lectin domain family 4, member a1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-77550149-2	chr10	77550049	77550249	+	797.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008404, intron 7 of 15)	intron (NM_008404, intron 7 of 15)	19801.0	NM_008404	16414.0	Mm.1137	NM_008404	ENSMUSG00000000290	Itgb2	2E6|AI528527|Cd18|LAD|LCAMB|Lfa1|MF17	integrin beta 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-55794141-4	chr7	55794026	55794226	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360874)	promoter-TSS (NM_001360874)	1.0	NM_001360873	233276.0	Mm.284306	NM_146190	ENSMUSG00000033790	Tubgcp5	B130010C12Rik|GCP5|mKIAA1899	tubulin, gamma complex associated protein 5	protein-coding	6.82030319479601	6.32941591727996	7.22301645368187	7.29292805294108	7.2655411337899	6.84724123514839	7.70929350595951	7.35767762617212	0.378853512470336	0.0855111336225726	0.449089916520426
Merged-chr2-73312674-4	chr2	73312598	73312798	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029022)	promoter-TSS (NM_029022)	46.0	NM_001355711	74616.0	Mm.247457	NM_029022	ENSMUSG00000008226	Scrn3	4833415E20Rik|AI427019|AV002033|Ses3	secernin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171231098-4	chr1	171230974	171231174	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010185, intron 2 of 4)	intron (NM_010185, intron 2 of 4)	3275.0	NM_010185	14127.0	Mm.22673	NM_010185	ENSMUSG00000058715	Fcer1g	AI573376|CD23|FcR-gamma|FcR[g]|FcRgamma|Fce1g|FcepsilonRI|Ly-50	Fc receptor, IgE, high affinity I, gamma polypeptide	protein-coding	0.41366026222004	0.129237878210578	0.121152234156919	0.305473574434595	0.276878209559982	0.13104778520502	0.330971807586565	1.31099216258634	2.24183812495173	0.231369267065587	1
Merged-chr3-107138763-1	chr3	107138663	107138863	+	791.0	f1_balb.idr	Intergenic	Intergenic	37196.0	NM_008417	16490.0	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	1.24959122811243	2.67660342739486	2.81192102597586	2.36453751784473	2.49251859395594	3.97487530738983	3.27740477532278	1.62203844615108	1.27955483541187	0.148602471785914	0.599909978629675
Merged-chr2-30795515-2	chr2	30795415	30795615	+	774.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_198000)	TTS (NM_198000)	6222.0	NM_198000	73598.0	Mm.34166	NM_198000	ENSMUSG00000044320	1700001O22Rik	1700113K14Rik|4930549G18Rik	RIKEN cDNA 1700001O22 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-10439609-4	chr3	10439501	10439701	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127191, intron 1 of 6)	CpG	529.0	NM_029068	74718.0	Mm.440548	NM_029068	ENSMUSG00000027534	Snx16	4930522N22Rik|AI117577|AI747675	sorting nexin 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72381643-2	chr6	72381543	72381743	+	687.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1175.0	NM_016872	53620.0	Mm.440321	NM_016872	ENSMUSG00000073002	Vamp5	AF119384|Camp	vesicle-associated membrane protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-54302232-2	chr13	54302132	54302332	+	608.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69117.0	NM_009946	12890.0	Mm.268902	NM_009946	ENSMUSG00000025867	Cplx2	921-L|AI413745|AW492120|Gm34843	complexin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-76409535-3	chr16	76409441	76409641	+	807.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-35714.0	NM_001358238	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-43889762-4	chr16	43889684	43889884	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356328)	promoter-TSS (NM_001356328)	-108.0	NM_001356328	106248.0	Mm.275354	NM_029128	ENSMUSG00000022704	Qtrt2	3110012M05Rik|4930470H18Rik|AI648807|Qrtr2|Qtrtd1	queuine tRNA-ribosyltransferase accessory subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-95316922-2	chr1	95316822	95317022	+	945.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026321, intron 1 of 2)	intron (NM_026321, intron 1 of 2)	3294.0	NM_026321	67698.0	Mm.272705	NM_026321	ENSMUSG00000051185	Fam174a	2310044D20Rik|Fam174|Naa6|Tmem157	family with sequence similarity 174, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-119297522-1	chr2	119297422	119297622	+	690.0	f1_c57bl6.idr	exon (NM_172269, exon 5 of 5)	exon (NM_172269, exon 5 of 5)	8780.0	NM_172269	228545.0	Mm.294761	NM_172269	ENSMUSG00000034216	Vps18	9930024E13Rik	VPS18 CORVET/HOPS core subunit	protein-coding	0.989388670228481	1.41010663261715	0.429258509224067	0.419871835414079	0.406337678058417	1.52634117415622	0.431914346789563	0.630460966292935	-0.132015111516047	0.939603729395428	0.998431161219273
Merged-chr6-114577547-2	chr6	114577447	114577647	+	639.799988	f1_balb.idr|f1_c57bl6.idr	Intergenic	IMPB_01|Satellite|Satellite	-65550.0	NM_028835	74244.0	Mm.275332	NM_028835	ENSMUSG00000030314	Atg7	1810013K23Rik|Agp7|Apg7l|Atg7l|Gm21553	autophagy related 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-72009364-1	chr8	72009264	72009464	+	1000.0	f1_c57bl6.idr	intron (NM_024444, intron 1 of 12)	intron (NM_024444, intron 1 of 12)	262.0	NM_024444	72054.0	Mm.160020	NM_024444	ENSMUSG00000003484	Cyp4f18	1810054N16Rik|Cyp4f3|Cypf18	cytochrome P450, family 4, subfamily f, polypeptide 18	protein-coding	0.804182184584165	1.18551088945998	1.13259321712864	1.19025086528672	0.679496015904383	0.552760257908312	0.732298791882418	0.536439644944942	-2.94089048905853	0.0714951486178833	1
Merged-chr5-75151328-3	chr5	75151235	75151435	+	843.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347718)	promoter-TSS (NM_001347718)	-916.0	NR_144636	18595.0	Mm.221403	NM_011058	ENSMUSG00000029231	Pdgfra	AI115593|CD140a|Pdgfr-2	platelet derived growth factor receptor, alpha polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135912013-4	chr5	135911909	135912109	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018871, intron 1 of 1)	intron (NM_018871, intron 1 of 1)	22632.0	NM_018871	22628.0	Mm.233813	NM_018871	ENSMUSG00000051391	Ywhag	14-3-3gamma|D7Bwg1348e	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-143099557-2	chr6	143099438	143099638	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_001362118, intron 2 of 25)	CpG	614.0	NM_001362118	74741.0	Mm.130260	NM_029081	ENSMUSG00000030279	C2cd5	5730419I09Rik|C030008B15Rik|CDP138	C2 calcium-dependent domain containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-63401809-4	chr4	63401707	63401907	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045514, intron 1 of 21)	intron (NM_001045514, intron 1 of 21)	1638.0	NM_001045514	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-154269986-4	chr3	154269884	154270084	+	885.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081263, exon 22 of 22)	exon (NM_001081263, exon 22 of 22)	60576.0	NM_010713	16875.0	Mm.15530	NM_010713	ENSMUSG00000096225	Lhx8	L3|Lhx7	LIM homeobox protein 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-60224829-2	chr11	60224729	60224929	+	755.599976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2248.0	NM_001358315	20787.0	Mm.278701	NM_011480	ENSMUSG00000020538	Srebf1	ADD1|SREBP1|bHLHd1	sterol regulatory element binding transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-93206005-4	chr5	93205901	93206101	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029363)	promoter-TSS (NM_029363)	494.0	NM_017367	12453.0	Mm.250419	NM_017367	ENSMUSG00000063015	Ccni	-	cyclin I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-40772994-4	chr4	40772894	40773094	+	908.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15109.0	NM_021535	74255.0	Mm.289929	NM_021535	ENSMUSG00000028409	Smu1	2600001O03Rik|2610203K23Rik|AB044414|AI845086|AW556129|Bwd	smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-47512986-1	chr19	47512886	47513086	+	698.0	f1_balb.idr	promoter-TSS (NR_045322)	promoter-TSS (NR_045322)	4.0	NR_045322	100503104.0	Mm.442735	NR_045322	ENSMUSG00000097990	Gm19557	-	predicted gene, 19557	ncRNA	-1.5356785800515	-1.50457819905931	-1.51398321097173	-1.52170876778291	-1.25174950685677	-1.50254009374394	-1.51185412242675	-1.37234212311997	1.86472964096384	0.593287162270504	1
Merged-chr4-119121469-2	chr4	119121369	119121569	+	730.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011400, intron 2 of 9)	intron (NM_011400, intron 2 of 9)	12724.0	NM_011400	20525.0	Mm.21002	NM_011400	ENSMUSG00000028645	Slc2a1	Glut-1|Glut1	solute carrier family 2 (facilitated glucose transporter), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-99362579-2	chr5	99362479	99362679	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 3 of 3)	(CA)n|Simple_repeat|Simple_repeat	-109652.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-109441061-3	chr13	109440997	109441197	+	939.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011056, intron 3 of 16)	intron (NM_011056, intron 3 of 16)	116353.0	NR_030644	100124489.0		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-94277143-4	chr11	94277039	94277239	+	881.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34560.0	NM_181819	278507.0	Mm.342216	NM_181819	ENSMUSG00000044177	Wfikkn2	2610304F08Rik|AY100450|Gasp1|WFIKKNRP	WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-34535964-2	chr15	34535864	34536064	+	708.625	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40653.0	NM_152894	67724.0	Mm.248779	NM_026340	ENSMUSG00000022325	Pop1	4932434G09Rik	processing of precursor 1, ribonuclease P/MRP family, (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-30611841-1	chr15	30611741	30611941	+	615.0	f1_balb.idr	intron (NM_001355502, intron 3 of 21)	intron (NM_001355502, intron 3 of 21)	-427285.0	NR_045186	73784.0	Mm.66947	NR_045186	ENSMUSG00000115474	4930430F21Rik	-	RIKEN cDNA 4930430F21 gene	ncRNA	-1.05877568042897	-1.03501312238488	-1.04817210678232	-1.05426068996071	-1.05810152525527	-1.03216151557194	-0.188696606725984	-1.05378786495764	3.16074139804981	0.330468818528456	1
Merged-chr8-57427746-3	chr8	57427652	57427852	+	873.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB2|LINE|L1	-28171.0	NM_009136	20284.0	Mm.12886	NM_009136	ENSMUSG00000031610	Scrg1	AW124307	scrapie responsive gene 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-151598731-2	chr2	151598631	151598831	+	558.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291077, intron 3 of 4)	intron (NM_001291077, intron 3 of 4)	26108.0	NM_145535	228765.0	Mm.32068	NM_145535	ENSMUSG00000027456	Sdcbp2	-	syndecan binding protein (syntenin) 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101979597-3	chr15	101979445	101979645	+	915.3110960000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	24797.0	NM_031170	16691.0	Mm.358618	NM_031170	ENSMUSG00000049382	Krt8	AA960620|AL022697|AU019895|Card2|EndoA|K8|Krt-2.8|Krt2-8	keratin 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-38423575-4	chr3	38423488	38423688	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61228.0	NM_001167883	99696.0	Mm.290937	NM_001033198	ENSMUSG00000044864	Ankrd50	AI662170|E430012K20Rik|mKIAA1223|mKIAA3019	ankyrin repeat domain 50	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-72783396-4	chr14	72783290	72783490	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73387.0	NM_207636	319448.0	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	3.45513621173241	2.6492399628875	2.07032730467602	3.00256895370008	2.60336380222256	2.91875415847728	3.19371615167614	2.36135293565761	-0.18579721628326	0.799181817362122	0.998431161219273
Merged-chr8-95235825-2	chr8	95235725	95235925	+	758.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	70760.0	NM_145601	333329.0	Mm.484049	NM_145601	ENSMUSG00000031789	Cngb1	Cngb1b|Garp2|Gm1959	cyclic nucleotide gated channel beta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-98350786-3	chr9	98350710	98350910	+	936.244446	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357445, intron 1 of 3)	intron (NM_001357445, intron 1 of 3)	54240.0	NM_001357451	74080.0	Mm.294082	NM_144533	ENSMUSG00000032456	Nmnat3	4933408N02Rik|PNAT3	nicotinamide nucleotide adenylyltransferase 3	protein-coding	2.41191040362376	1.24070633917633	1.20390360404186	1.17408076837385	3.01567876560268	2.42731400838203	2.82226213812371	2.37258232080231	2.4021438778712	0.0211181273453688	0.186122888263762
Merged-chr3-95662095-4	chr3	95661997	95662197	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008562, exon 3 of 3)	3' UTR (NM_008562, exon 3 of 3)	3376.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180725984-4	chr1	180725894	180726094	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133225)	promoter-TSS (NM_133225)	-49.0	NM_133225	170760.0	Mm.272981	NM_133225	ENSMUSG00000026499	Acbd3	60kDa|8430407O11Rik|D1Ertd10e|GCP60|GOLPH1|Gocap1|Pap7	acyl-Coenzyme A binding domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-87581052-3	chr1	87580955	87581155	+	809.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160163, intron 2 of 3)	intron (NM_001160163, intron 2 of 3)	-2967.0	NM_001160165	23956.0	Mm.143717	NM_015750	ENSMUSG00000079434	Neu2	MBS|MSS|MTS	neuraminidase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-63240812-2	chr2	63240712	63240912	+	624.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3A|LINE|L1	-56525.0	NM_133207	170738.0	Mm.242532	NM_133207	ENSMUSG00000059742	Kcnh7	9330137I11Rik|Kv11.3|erg3	potassium voltage-gated channel, subfamily H (eag-related), member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85531955-2	chr12	85531855	85532055	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	58065.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-9981488-2	chr19	9981388	9981588	+	767.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_073181, intron 1 of 4)	B1F|SINE|Alu	888.0	NR_073181	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59435873-4	chr15	59435786	59435986	+	982.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164604, intron 3 of 4)	intron (NM_001164604, intron 3 of 4)	61688.0	NM_001164604	68501.0	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	3.75081310781761	3.82963789045496	4.72508345831734	3.41917456053167	3.58426896434978	3.3480665369482	4.5996680310713	4.38745785822695	0.0782469703220223	0.879895282752115	0.998431161219273
Merged-chr6-149381923-2	chr6	149381823	149382023	+	924.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR21|LTR|ERVK	-27061.0	NM_001112796	12121.0	Mm.177181	NM_009753	ENSMUSG00000003452	Bicd1	B830009D06Rik|bic-D 1	BICD cargo adaptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70688052-4	chr11	70687980	70688180	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178116)	promoter-TSS (NM_178116)	25.0	NM_001190376	216874.0	Mm.473726	NM_178116	ENSMUSG00000040712	Camta2	Kiaa0909-hp|mKIAA0909	calmodulin binding transcription activator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-31139925-2	chr3	31139825	31140025	+	634.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-9995.0	NM_008770	18417.0	Mm.4425	NM_008770	ENSMUSG00000037625	Cldn11	Claudin-11|Claudin11|Osp|Otm	claudin 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-121808922-2	chr11	121808822	121809022	+	862.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21296.0	NM_029049	74675.0	Mm.61213	NM_029049	ENSMUSG00000039198	Ptchd3	4930451E13Rik|4933440L20Rik|RNDEu-3	patched domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-9033095-1	chr3	9032995	9033195	+	973.0	f1_c57bl6.idr	Intergenic	Intergenic	-28372.0	NM_001357075	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	-0.678401787990407	-0.663132360302368	-0.668078748813608	-0.671931941511019	-0.501334830117637	0.385715020345022	-0.66698318908048	-0.671256442086785	3.68274367958705	0.166146674514195	1
Merged-chr4-149485241-4	chr4	149485147	149485347	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133435)	promoter-TSS (NM_133435)	18.0	NM_001356322	69151.0	Mm.464434	NM_026963	ENSMUSG00000028990	Lzic	1810030J04Rik|AW047580	leucine zipper and CTNNBIP1 domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-134314896-4	chr5	134314800	134315000	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080749)	promoter-TSS (NM_001080749)	-140.0	NM_010365	14886.0	Mm.261570	NM_010365	ENSMUSG00000060261	Gtf2i	6030441I21Rik|BAP-135|Diws1t|GtfII-I|Spin|TFII-I|WBSCR6	general transcription factor II I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191422919-4	chr1	191422822	191423022	+	962.7333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25881.0	NM_144880	226849.0	Mm.205569	NM_144880	ENSMUSG00000026626	Ppp2r5a	PR61alpha	protein phosphatase 2, regulatory subunit B', alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-7041657-2	chr10	7041557	7041757	+	962.8333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus4|LINE|L1	-18472.0	NM_001033391	320495.0	Mm.331674	NM_001033391	ENSMUSG00000064065	Ipcef1	A130090K04Rik	interaction protein for cytohesin exchange factors 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4333506-2	chr19	4333406	4333606	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001984, intron 12 of 20)	intron (NM_001001984, intron 12 of 20)	-27284.0	NM_001290818	110355.0	Mm.254144	NM_130863	ENSMUSG00000024858	Grk2	Adrbk-1|Adrbk1|Bark-1|beta ARK|betaARK1	G protein-coupled receptor kinase 2	protein-coding	2.94285900095929	2.44082060168263	2.74076629274734	3.41384265361121	1.86616390919873	2.09278975116214	2.51942115257506	3.25170472093284	-0.718397509007319	0.354562753054963	0.853391720177295
Merged-chr18-36736602-1	chr18	36736502	36736702	+	565.0	f1_c57bl6.idr	intron (NM_028036, intron 2 of 11)	L2b|LINE|L2	1532.0	NM_028036	71983.0	Mm.135188	NM_028036	ENSMUSG00000006850	Tmco6	2410015B03Rik	transmembrane and coiled-coil domains 6	protein-coding	1.45379562672294	1.4085030241915	0.882355105860095	1.32298268522771	1.37251787079743	1.27325192100686	1.23435265252192	1.32962517828205	0.0523648962114508	0.966579975299787	0.998431161219273
Merged-chr1-39896715-1	chr1	39896615	39896815	+	543.0	f0_c57.idr	Intergenic	MLT1A1|LTR|ERVL-MaLR	-4198.0	NM_001252202	26921.0	Mm.491139	NM_008696	ENSMUSG00000026074	Map4k4	9430080K19Rik|AU043147|AU045934|AW046177|HGK|Nik	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-34693285-1	chr13	34693185	34693385	+	616.0	f0_balb.idr	Intergenic	MER117|DNA|hAT-Charlie	40362.0	NR_105041	101056149.0	Mm.421309	NR_105041	ENSMUSG00000086786	Gm15908	-	predicted gene 15908	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-43923502-2	chr14	43923402	43923602	+	777.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053112)	promoter-TSS (NM_053112)	-134.0	NM_053112	93725.0	Mm.429087	NM_053112	ENSMUSG00000090166	Ear10	Raf2	eosinophil-associated, ribonuclease A family, member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-73303387-2	chr17	73303287	73303487	+	579.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	95909.0	NM_001033444	381122.0	Mm.81496	NM_001033444	ENSMUSG00000043705	Capn13	CANP 13|Gm943	calpain 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-20209285-2	chr11	20209185	20209385	+	676.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008996, intron 1 of 5)	B2_Mm2|SINE|B2	7873.0	NM_008996	19324.0	Mm.271944	NM_008996	ENSMUSG00000020149	Rab1a	Gtbp|Rab-1|Rab1|Ypt1|mKIAA3012	RAB1A, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-56299611-4	chr8	56299520	56299720	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008278, intron 3 of 6)	intron (NM_008278, intron 3 of 6)	5068.0	NM_008278	15446.0	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-45449243-2	chr5	45449143	45449343	+	748.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_024236, intron 1 of 6)	intron (NM_024236, intron 1 of 6)	986.0	NM_024236	110391.0	Mm.30204	NM_024236	ENSMUSG00000015806	Qdpr	2610008L04Rik|D5Ertd371e|Dhpr|PKU2	quinoid dihydropteridine reductase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-119188476-2	chr4	119188384	119188584	+	626.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013848, intron 2 of 12)	intron (NM_013848, intron 2 of 12)	1527.0	NM_013848	27028.0	Mm.290753	NM_013848	ENSMUSG00000028644	Ermap	AA409279|AI666418	erythroblast membrane-associated protein	protein-coding	0.991229408321816	0.898614357486207	0.864669993522046	0.838173656010588	0.906313560162147	0.749916297704112	0.872192790127733	0.549722095778051	-0.706158082438373	0.63288734790548	1
Merged-chr9-95570225-2	chr9	95570125	95570325	+	870.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10408.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-86886859-2	chr8	86886756	86886956	+	585.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER4A|LTR|ERVK	-1598.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-5826025-3	chr10	5825936	5826136	+	802.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_019958, exon 5 of 5)	3' UTR (NM_019958, exon 5 of 5)	-2093.0	NM_175374	108853.0	Mm.55082	NM_175374	ENSMUSG00000019774	Mtrf1l	9130004K12Rik	mitochondrial translational release factor 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-135628993-2	chr3	135628903	135629103	+	575.0	f0_balb.idr|f1_balb.idr	intron (NM_008689, intron 6 of 24)	intron (NM_008689, intron 6 of 24)	62544.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	0.98776177079988	0.302327596410607	0.293703281405465	0.286987229244622	1.15728832636749	0.988714090733353	0.295613092405557	0.288164545236508	1.2165246193295	0.541059023797837	1
Merged-chr10-56790863-2	chr10	56790763	56790963	+	555.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	358882.0	NR_152768	102640560.0	Mm.417249	NR_152768		Gm36595	-	predicted gene, 36595	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-101763818-2	chr13	101763718	101763918	+	665.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077495, intron 1 of 15)	intron (NM_001077495, intron 1 of 15)	4399.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-117829661-2	chr4	117829561	117829761	+	708.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5597.0	NM_008135	14664.0	Mm.244549	NM_008135	ENSMUSG00000028542	Slc6a9	Glyt-1|Glyt1	solute carrier family 6 (neurotransmitter transporter, glycine), member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-38417515-2	chr18	38417415	38417615	+	740.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1392.0	NM_022996	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-110745420-4	chr10	110745309	110745509	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178609)	promoter-TSS (NM_178609)	-30.0	NM_001358560	52679.0	Mm.11747	NM_178609	ENSMUSG00000020185	E2f7	A630014C11Rik|D10Ertd739e|E2F-7	E2F transcription factor 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53084019-2	chr4	53083919	53084119	+	706.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 14 of 49)	intron (NM_013454, intron 14 of 49)	72139.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-8808030-2	chr10	8807971	8808171	+	622.75	f0_balb.idr|f1_balb.idr	intron (NM_175155, intron 4 of 19)	intron (NM_175155, intron 4 of 19)	77999.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0.635673368799943	0.0338447762032213	0.0287499342484975	0.0248267319028744	0.280809249356577	0.0349948048235094	0.203593490586518	0.545195349024351	0.437549982561601	0.835659727170268	1
Merged-chr1-106712591-3	chr1	106712535	106712735	+	604.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177410, exon 1 of 1)	exon (NM_177410, exon 1 of 1)	1655.0	NM_009741	12043.0	Mm.257460	NM_009741	ENSMUSG00000057329	Bcl2	AW986256|Bcl-2|C430015F12Rik|D630044D05Rik|D830018M01Rik	B cell leukemia/lymphoma 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-33090161-2	chr2	33090061	33090261	+	861.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355201, intron 2 of 29)	intron (NM_001355201, intron 2 of 29)	-2908.0	NM_178888	99326.0	Mm.41290	NM_178888	ENSMUSG00000038860	Garnl3	AW120551	GTPase activating RANGAP domain-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-153975886-4	chr3	153975779	153975979	+	849.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081263, intron 1 of 21)	intron (NM_001081263, intron 1 of 21)	2443.0	NM_001081263	242259.0	Mm.239962	NM_001081263	ENSMUSG00000028360	Slc44a5	AA117069|Gm422	solute carrier family 44, member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-74948385-2	chr1	74948285	74948485	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001313683, exon 2 of 2)	exon (NM_001313683, exon 2 of 2)	3287.0	NM_001313683	16147.0	Mm.439736	NM_010544	ENSMUSG00000006538	Ihh	HHG-2	Indian hedgehog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-113766181-2	chr7	113766081	113766281	+	623.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_145584, exon 1 of 16)	5' UTR (NM_145584, exon 1 of 16)	183.0	NM_145584	233744.0	Mm.334160	NM_145584	ENSMUSG00000038156	Spon1	AI666765|AW455831|BC020531|D330035F22Rik|FSP	spondin 1, (f-spondin) extracellular matrix protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-66305059-2	chr7	66304959	66305159	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146191, intron 10 of 33)	ORR1F|LTR|ERVL-MaLR	76665.0	NR_106024	102465640.0		NR_106024	ENSMUSG00000098353	Mir7057	Gm27550|mmu-mir-7057	microRNA 7057	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-114953619-4	chr13	114953511	114953711	+	966.4833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	-21511.0	NM_008396	16398.0	Mm.5007	NM_008396	ENSMUSG00000015533	Itga2	CD49B|DX5|GPIa	integrin alpha 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123865616-4	chr5	123865505	123865705	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030701)	promoter-TSS (NM_030701)	-89.0	NM_030701	80885.0	Mm.440567	NM_030701	ENSMUSG00000045502	Hcar2	Gpr109a|Gpr109b|HM74|Niacr1|PUMA-G|Pumag|mHM74b	hydroxycarboxylic acid receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-170361461-3	chr1	170361357	170361557	+	849.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109985, intron 4 of 9)	intron (NM_001109985, intron 4 of 9)	52596.0	NM_001039593	76925.0	Mm.33631	NM_001039593	ENSMUSG00000042800	Spata46	1700015E13Rik	spermatogenesis associated 46	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83066041-3	chr11	83065963	83066163	+	827.133362	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011408, intron 1 of 1)	intron (NM_011408, intron 1 of 1)	951.0	NM_011408	20556.0	Mm.278689	NM_011408	ENSMUSG00000072620	Slfn2	Shlf2	schlafen 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-116627356-4	chr8	116627267	116627467	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029441, intron 1 of 6)	Lx8|LINE|L1	105624.0	NM_029441	75796.0	Mm.159575	NM_029441	ENSMUSG00000031758	Cdyl2	1700029M19Rik|4930453I21Rik|Gm20194	chromodomain protein, Y chromosome-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141853527-4	chr4	141853476	141853676	+	666.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RodERV21-int|LTR|ERV1	-7217.0	NM_001033875	76701.0	Mm.489680	NM_001033875	ENSMUSG00000062478	Ctrc	1810044E12Rik	chymotrypsin C (caldecrin)	protein-coding	1.32531157421212	3.01363549177627	3.16222274559359	2.07680843775385	2.13486728569703	3.50918317901064	2.47644417636025	2.92910223215513	0.500317284979753	0.562368359129159	0.960362415684079
Merged-chr5-5381423-5	chr5	5381467	5381667	+	756.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1316.0	NM_011074	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4131967-2	chr19	4131867	4132067	+	665.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_025889, exon 7 of 7)	3' UTR (NM_025889, exon 7 of 7)	6007.0	NM_025889	66990.0	Mm.276255	NM_025889		Tmem134	2410001H17Rik|AI463452	transmembrane protein 134	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-40379694-4	chr12	40379590	40379790	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178845, intron 1 of 11)	intron (NM_178845, intron 1 of 11)	66100.0	NM_172575	246196.0	Mm.26852	NM_172575	ENSMUSG00000055917	Zfp277	2410017E24Rik|NIRF4	zinc finger protein 277	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134828962-2	chr6	134828937	134829137	+	657.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1162.0	NM_177687	232430.0	Mm.267010	NM_177687	ENSMUSG00000032652	Crebl2	AI046348|B230205M03	cAMP responsive element binding protein-like 2	protein-coding	0.791419042162555	1.16604883795726	0.754754712591725	0.410907437238945	0.686014674211541	0.942461299009498	0.41880911215947	0.411983326064746	-0.987676943641342	0.562646445630213	1
Merged-chr3-32403292-4	chr3	32403192	32403392	+	993.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32859.0	NM_008839	18706.0	Mm.260521	NM_008839	ENSMUSG00000027665	Pik3ca	6330412C24Rik|caPI3K|p110|p110alpha	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132622773-1	chr4	132622673	132622873	+	598.0	f1_balb.idr	Intergenic	Intergenic	-16273.0	NM_210071	14050.0	Mm.227733	NM_010166	ENSMUSG00000028886	Eya3	AI844637	EYA transcriptional coactivator and phosphatase 3	protein-coding	0.11135781837066	0.155995088218856	1.29381401937659	0.130693278244293	1.79636541097879	0.159105872857659	0.145054930017571	0.132674593793674	0.912634895070231	0.781650436963136	0.998431161219273
Merged-chr14-69805486-5	chr14	69805404	69805604	+	971.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153514)	promoter-TSS (NM_153514)	41.0	NM_153514	246710.0	Mm.102367	NM_153514	ENSMUSG00000022075	Rhobtb2	Dbc2|E130206H14Rik|mKIAA0717	Rho-related BTB domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94393805-2	chr10	94393705	94393905	+	696.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 1 of 4)	intron (NM_001359762, intron 1 of 4)	81856.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30135086-4	chr2	30134985	30135185	+	924.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146252, intron 2 of 11)	intron (NM_146252, intron 2 of 11)	1339.0	NM_146252	70296.0	Mm.19172	NM_146252	ENSMUSG00000039678	Tbc1d13	2600014A06Rik|BC025586	TBC1 domain family, member 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-4841605-3	chr12	4841490	4841690	+	966.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016863)	promoter-TSS (NM_016863)	5.0	NM_016863	14226.0	Mm.20453	NM_016863	ENSMUSG00000020635	Fkbp1b	12.6kDa|AW494148|FKBP12.6|calstabin2	FK506 binding protein 1b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-185294825-4	chr1	185294726	185294926	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_198653, exon 18 of 23)	exon (NM_198653, exon 18 of 23)	-18493.0	NR_029580	387189.0		NR_029580	ENSMUSG00000065581	Mir194-1	Mirn194|Mirn194-1|miR-194|mir-194-1	microRNA 194-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125527822-3	chr6	125527708	125527908	+	791.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25140.0	NM_011708	22371.0	Mm.22339	NM_011708	ENSMUSG00000001930	Vwf	6820430P06Rik|AI551257|B130011O06Rik|C630030D09|F8VWF|VWD	Von Willebrand factor	protein-coding	2.67045208894889	1.73668471998123	1.68056069095505	2.38044895610509	1.56899130916073	1.74903081039689	1.48646010705085	2.70397912828387	-0.478491817048182	0.6296472518574	0.981201918729827
Merged-chr11-106785572-2	chr11	106785472	106785672	+	743.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355676, intron 6 of 13)	intron (NM_001355676, intron 6 of 13)	-2813.0	NR_037224	100526469.0		NR_037224	ENSMUSG00000093273	Mir3064	mir-3064|mmu-mir-3064	microRNA 3064	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-17808741-4	chr12	17808617	17808817	+	802.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	117908.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-122245527-5	chr3	122245420	122245620	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008129)	promoter-TSS (NM_008129)	-37.0	NM_008129	14630.0	Mm.292676	NM_008129	ENSMUSG00000028124	Gclm	AI649393|Gcmc|Glclr	glutamate-cysteine ligase, modifier subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-102181614-3	chr2	102181495	102181695	+	834.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178886, intron 1 of 5)	intron (NM_178886, intron 1 of 5)	4865.0	NM_178886	241576.0	Mm.489740	NM_178886	ENSMUSG00000048058	Ldlrad3	6430500P08|AI194318|Lrad3	low density lipoprotein receptor class A domain containing 3	protein-coding	0.197473618098199	-0.256158330136023	0.40260282151256	-0.264017290929516	-0.268846421740346	-0.0596846113441717	-0.259618071989698	-0.263419899020211	-2.78412720838604	0.250779843367364	1
Merged-chr2-135488499-3	chr2	135488400	135488600	+	829.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	94720.0	NR_015544	320684.0	Mm.421433	NR_015544	ENSMUSG00000085631	9630028H03Rik	-	RIKEN cDNA 9630028H03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80699239-2	chr10	80699139	80699339	+	932.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_172457, intron 1 of 3)	intron (NM_172457, intron 1 of 3)	2581.0	NM_172457	208228.0	Mm.49309	NM_172457	ENSMUSG00000003348	Mob3a	5330417K06Rik|A630029F06|AV218468|Mobkl2a	MOB kinase activator 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-32721602-2	chr5	32721507	32721707	+	816.5	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	24735.0	NM_001347332	320951.0	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	1.10723395946202	1.3592457924196	1.28424716769967	1.22181107861729	4.21602519028923	4.68689792286772	4.64884432989998	3.88798765391218	7.44268199751169	2.4857864127981e-11	6.12831480426403e-09
Merged-chr13-23446801-4	chr13	23446686	23446886	+	860.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15769.0	NR_015492	320842.0	Mm.487476	NR_015492	ENSMUSG00000085024	C230035I16Rik	-	RIKEN cDNA C230035I16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-7845020-1	chr6	7844920	7845120	+	1000.0	f0_c57.idr	promoter-TSS (NM_052993)	promoter-TSS (NM_052993)	-204.0	NM_052993	94192.0	Mm.102752	NM_052993	ENSMUSG00000042460	C1galt1	2210410E06Rik|AV284120|T-synthase	core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-128002276-4	chr7	128002176	128002376	+	891.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-2102.0	NM_001079932	434246.0	Mm.389924	NM_001079932	ENSMUSG00000042828	Trim72	BC067209|MG53	tripartite motif-containing 72	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-94368197-2	chr8	94368097	94368297	+	553.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18232.0	NM_001357205	64209.0	Mm.29151	NM_022331	ENSMUSG00000031770	Herpud1	Herp|Mifl|SUP	homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-77450037-2	chr11	77449937	77450137	+	581.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001291190, exon 13 of 14)	exon (NM_001291190, exon 13 of 14)	-13876.0	NM_139129	216961.0	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-144937680-4	chr7	144937570	144937770	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007631, intron 2 of 4)	intron (NM_007631, intron 2 of 4)	2255.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-16997498-2	chr12	16997342	16997542	+	876.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_172574, intron 3 of 6)	intron (NM_172574, intron 3 of 6)	2676.0	NM_172574	217430.0	Mm.379451	NM_172574	ENSMUSG00000045679	Pqlc3	C78076|E030024M05Rik	PQ loop repeat containing	protein-coding	1.58149622165122	1.00113677362819	0.978957011468496	2.39487185125103	1.71085525279273	2.06255315120698	0.983913852965561	1.91724582518146	0.22159138008881	0.862410465662098	0.998431161219273
Merged-chr17-29259688-4	chr17	29259591	29259791	+	838.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026845, intron 2 of 3)	intron (NM_026845, intron 2 of 3)	4280.0	NM_026845	68816.0	Mm.328928	NM_026845	ENSMUSG00000024007	Ppil1	1110060O10Rik|AI327391|Cypl1	peptidylprolyl isomerase (cyclophilin)-like 1	protein-coding	4.05221359530351	3.07486494618132	4.79823053058067	4.30714907078505	3.86916596414134	4.43549102953531	3.47953007333152	4.54880026043046	-0.0623848015076548	0.900739555304117	0.998431161219273
Merged-chr12-102450638-4	chr12	102450554	102450754	+	997.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10841.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	5.07237489089093	5.2691977776765	5.59398803459516	5.63771565054767	6.22300624226358	6.17610079062768	6.39050702977759	6.45752303172972	1.0061238997533	3.5566868776924e-05	0.00133076286357235
Merged-chr7-122197505-2	chr7	122197405	122197605	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11274.0	NM_001316689	26918.0	Mm.20452	NM_012016	ENSMUSG00000030866	Ern2	Ern1|Ire1|Ire1b|ire1-beta|mIre1	endoplasmic reticulum (ER) to nucleus signalling 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43508814-4	chr4	43508724	43508924	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001013377)	promoter-TSS (NM_001013377)	-77.0	NM_001013377	230098.0	Mm.331567	NM_001013377	ENSMUSG00000051517	Arhgef39	E130306D19Rik	Rho guanine nucleotide exchange factor (GEF) 39	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-17915150-3	chr17	17915042	17915242	+	949.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27318.0	NM_008039	14289.0	Mm.378918	NM_008039	ENSMUSG00000052270	Fpr2	E330010I07Rik|Fpr-rs2	formyl peptide receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-12978876-2	chr7	12978776	12978976	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001168562, intron 1 of 4)	intron (NM_001168562, intron 1 of 4)	1028.0	NM_001168561	269870.0	Mm.62083	NM_175558	ENSMUSG00000033961	Zfp446	A630035I11Rik|A930031C22|AA120513|AV306632	zinc finger protein 446	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-86303486-2	chr1	86303386	86303586	+	699.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_151592, exon 2 of 2)	non-coding (NR_151592, exon 2 of 2)	265.0	NM_145222	227327.0	Mm.86467	NM_145222	ENSMUSG00000079445	B3gnt7	C330001H22Rik|beta-3GnT7	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-30946811-2	chr16	30946711	30946911	+	597.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	134621.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-90702502-2	chr5	90702402	90702602	+	650.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56796.0	NM_009141	20311.0	Mm.4660	NM_009141	ENSMUSG00000029371	Cxcl5	AMCF-II|Cxcl6|ENA-78|GCP-2|LIX|Scyb5|Scyb6	chemokine (C-X-C motif) ligand 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140616843-4	chr5	140616747	140616947	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9506.0	NM_008494	16848.0	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-105685963-4	chr5	105685815	105686015	+	933.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-14054.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	1.596113167469	1.59097366446645	1.53084248350929	1.04744958018041	1.16392928500059	0.878454673329055	1.94635754886579	0.850272417246693	-0.514987573329684	0.697613801189377	0.998087997318924
Merged-chr2-30464164-4	chr2	30464072	30464272	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1I|LTR|ERVL-MaLR	10027.0	NM_030244	72500.0	Mm.295464	NM_030244	ENSMUSG00000089762	Ier5l	2610524G09Rik	immediate early response 5-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-92853305-4	chr8	92853206	92853406	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008610, exon 13 of 13)	3' UTR (NM_008610, exon 13 of 13)	-2027.0	NM_173014	270084.0	Mm.21463	NM_173014	ENSMUSG00000033192	Lpcat2	1-AGPAT 11|A330042H22|Aytl1|Aytl1a|lpafat1|lysoPAFAT|lysoPAFAT/LPCAT2	lysophosphatidylcholine acyltransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-46649887-2	chr17	46649787	46649987	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025611)	promoter-TSS (NM_025611)	-451.0	NM_025611	66515.0	Mm.329078	NM_025611	ENSMUSG00000038545	Cul7	2510004L20Rik|AA409809|C230011P08Rik|p185|p193	cullin 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-105932713-4	chr3	105932623	105932823	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033780)	promoter-TSS (NM_001033780)	-59.0	NM_001033780	433638.0	Mm.239081	NM_001033780	ENSMUSG00000074342	I830077J02Rik	-	RIKEN cDNA I830077J02 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-46565248-4	chr4	46565095	46565295	+	838.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178893, intron 1 of 12)	intron (NM_178893, intron 1 of 12)	1245.0	NM_178893	107684.0	Mm.416311	NM_178893	ENSMUSG00000028337	Coro2a	9030208C03Rik|AI563590|IR10	coronin, actin binding protein 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3868765-4	chr12	3868646	3868846	+	944.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007872, intron 4 of 22)	intron (NM_007872, intron 4 of 22)	-6502.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-4918524-4	chr18	4918419	4918619	+	827.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	106033.0	NR_045881	100038439.0	Mm.387569	NR_045881	ENSMUSG00000097043	Gm10556	-	predicted gene 10556	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-13890045-2	chr9	13889945	13890145	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	62329.0	NM_176836	72826.0	Mm.246174	NM_176836	ENSMUSG00000037808	Fam76b	2810485I05Rik|C78303	family with sequence similarity 76, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-48124942-4	chr4	48124826	48125026	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026343)	promoter-TSS (NM_026343)	7.0	NM_026343	67727.0	Mm.171334	NM_026343	ENSMUSG00000061455	Stx17	4833418L03Rik|6330411F21Rik|9030425C21Rik|AW048351	syntaxin 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21031501-4	chr9	21031389	21031589	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008319)	promoter-TSS (NM_008319)	-549.0	NM_008319	15898.0	Mm.4629	NM_008319	ENSMUSG00000032174	Icam5	CD50|ICAM-3|Icam3|TLN|Tlcn	intercellular adhesion molecule 5, telencephalin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-38644129-2	chr12	38644029	38644229	+	653.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29608.0	NR_045943	73867.0	Mm.78933	NR_045943	ENSMUSG00000112967	4930428E07Rik	-	RIKEN cDNA 4930428E07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-76319087-4	chr12	76318970	76319170	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138745, intron 27 of 27)	HAL1|LINE|L1	-5821.0	NM_001101471	238276.0	Mm.311452	NM_001101471	ENSMUSG00000021057	Akap5	3526401B18Rik|AKAP 150|AKAP-5|AKAP150|BB098886|Gm258|P150	A kinase (PRKA) anchor protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-62451491-2	chr10	62451391	62451591	+	895.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_027926)	TTS (NR_027926)	-1753.0	NM_181423	338359.0	Mm.235898	NM_181423	ENSMUSG00000020079	Supv3l1	6330443E10Rik	suppressor of var1, 3-like 1 (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-33232225-1	chr14	33232125	33232325	+	779.0	f0_balb.idr	intron (NM_153800, intron 2 of 10)	intron (NM_153800, intron 2 of 10)	15402.0	NM_153800	239027.0	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165779151-3	chr2	165779061	165779261	+	787.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	79012.0	NM_001252585	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36348443-7	chr18	36348344	36348544	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081365)	promoter-TSS (NM_001081365)	-180.0	NM_001081365	66060.0	Mm.272527	NM_001081365	ENSMUSG00000046727	Cystm1	0610010O12Rik	cysteine-rich transmembrane module containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70458342-3	chr11	70458313	70458513	+	625.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151499, intron 3 of 5)	B2_Mm2|SINE|B2	-1020.0	NM_001348337	574428.0	Mm.425692	NM_001029929	ENSMUSG00000040829	Zmynd15	-	zinc finger, MYND-type containing 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-80156934-4	chr11	80156830	80157030	+	973.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172133, intron 2 of 10)	intron (NM_172133, intron 2 of 10)	2768.0	NM_172133	216991.0	Mm.341520	NM_172133	ENSMUSG00000020709	Adap2	Centa2	ArfGAP with dual PH domains 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27732287-2	chr2	27732187	27732387	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290482, intron 1 of 9)	intron (NM_001290482, intron 1 of 9)	21704.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-99899567-2	chr12	99899467	99899667	+	566.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028354, intron 5 of 15)	intron (NM_028354, intron 5 of 15)	15052.0	NM_028354	104884.0	Mm.312323	NM_028354	ENSMUSG00000021177	Tdp1	2810481F14Rik|4921509N21Rik|AI838772|AW493413|E430034L06Rik|MLZ-501|SCAN1	tyrosyl-DNA phosphodiesterase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-104410981-2	chr7	104410881	104411081	+	770.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009099, exon 8 of 8)	3' UTR (NM_009099, exon 8 of 8)	35144.0	NM_001357467	20128.0	Mm.295578	NM_009099	ENSMUSG00000030921	Trim30a	Rpt-1|Rpt1|Trim30	tripartite motif-containing 30A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-10193452-1	chr17	10193352	10193552	+	548.0	f1_c57bl6.idr	Intergenic	Intergenic	125909.0	NM_021881	19317.0	Mm.130694	NM_021881	ENSMUSG00000062078	Qk	1110003F05Rik|1500005P18|QkI|l(17)-1Wis|l17Wis1	quaking	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-40294490-4	chr8	40294380	40294580	+	933.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7527.0	NM_030610	80857.0	Mm.425526	NM_030610	ENSMUSG00000031603	Fgf20	-	fibroblast growth factor 20	protein-coding	3.48368171107492	4.04281021028554	3.6225679079172	3.25197871963876	3.82071948721055	2.65662415360791	3.94213334717707	4.64102053264754	0.458630818350178	0.4127546851921	0.894783826796838
Merged-chr6-72558213-2	chr6	72558113	72558313	+	773.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001271415, exon 8 of 11)	exon (NM_001271415, exon 8 of 11)	8566.0	NM_001271395	12332.0	Mm.18626	NM_007599	ENSMUSG00000056737	Capg	gCap39|mbh1	capping protein (actin filament), gelsolin-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-31228089-3	chr13	31227992	31228192	+	648.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045957, intron 1 of 2)	intron (NR_045957, intron 1 of 2)	12994.0	NR_045957	73924.0	Mm.417825	NR_045957	ENSMUSG00000087460	4930401O12Rik	-	RIKEN cDNA 4930401O12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-7937800-1	chr10	7937700	7937900	+	756.0	f0_balb.idr	intron (NM_138667, intron 1 of 6)	intron (NM_138667, intron 1 of 6)	15265.0	NM_001359534	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-5529020-3	chr2	5528913	5529113	+	896.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290375, intron 2 of 10)	intron (NM_001290375, intron 2 of 10)	147033.0	NM_001290376	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-131036915-2	chr2	131036813	131037013	+	821.0	f0_balb.idr|f1_balb.idr	Intergenic	RMER15|LTR|ERVL	3485.0	NR_105969	102465606.0		NR_105969	ENSMUSG00000098686	Mir6973b	Gm27815|mmu-mir-6973b	microRNA 6973b	ncRNA	-1.58994551673671	-1.55912852307891	-1.56844783632235	-1.57610299769523	-1.18549093183599	-1.55710898902261	-1.56633814807757	-1.57473272746952	1.78703309985663	0.610309988231842	1
Merged-chr11-3141904-3	chr11	3141766	3141966	+	980.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030207, intron 21 of 32)	intron (NM_030207, intron 21 of 32)	17845.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-118482615-4	chr7	118482541	118482741	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9334.0	NM_001033380	319622.0	Mm.323386	NM_001033380	ENSMUSG00000095115	Itpripl2	C130081G24|E030018N11Rik	inositol 1,4,5-triphosphate receptor interacting protein-like 2	protein-coding	5.09133810117435	5.3000993963328	5.17823365643026	4.29319436857458	5.52926325062804	5.14432400786827	5.06904191066765	5.75296632836698	0.462062582312525	0.159700349675038	0.619354256974287
Merged-chr11-116024406-7	chr11	116024310	116024510	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008211)	promoter-TSS (NM_008211)	94.0	NM_008211	15081.0	Mm.18516	NM_008211	ENSMUSG00000016559	H3f3b	9430068D06Rik|H3.3B	H3 histone, family 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-51328667-4	chr3	51328565	51328765	+	908.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023502, intron 1 of 9)	intron (NM_023502, intron 1 of 9)	11979.0	NM_001356358	69257.0	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-42262501-2	chr6	42262401	42262601	+	938.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175408, intron 1 of 2)	intron (NM_175408, intron 1 of 2)	531.0	NM_175408	109218.0	Mm.480678	NM_175408	ENSMUSG00000071506	Tmem139	A930027H06Rik	transmembrane protein 139	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-80880535-4	chr8	80880424	80880624	+	961.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001301298)	promoter-TSS (NM_001301298)	-5.0	NM_001301298	14388.0	Mm.277409	NM_021356	ENSMUSG00000031714	Gab1	AA408973|AW107238	growth factor receptor bound protein 2-associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-119791430-2	chr13	119791341	119791541	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_028245)	promoter-TSS (NM_028245)	-319.0	NM_001302550	72465.0	Mm.139115	NM_028245	ENSMUSG00000094870	Zfp131	2610109I01Rik|AW558871|Znf131	zinc finger protein 131	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-80455757-2	chr17	80455657	80455857	+	548.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009231, intron 2 of 21)	intron (NM_009231, intron 2 of 21)	24696.0	NM_009231	20662.0	Mm.60975	NM_009231	ENSMUSG00000024241	Sos1	4430401P03Rik|9630010N06|AI449023	SOS Ras/Rac guanine nucleotide exchange factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-57798171-4	chr14	57798086	57798286	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001142441)	promoter-TSS (NM_001142441)	-3.0	NM_009119	20220.0	Mm.30173	NM_009119	ENSMUSG00000021963	Sap18	C530046K05Rik|D11Ertd539e|EMegR4|Sap18a|Sinbp1	Sin3-associated polypeptide 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-101082930-4	chr12	101082820	101083020	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_038047, exon 1 of 4)	non-coding (NR_038047, exon 1 of 4)	469.0	NR_038049	319760.0	Mm.440198	NM_176997	ENSMUSG00000097121	D130020L05Rik	9430007L23Rik	RIKEN cDNA D130020L05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-142295428-3	chr3	142295336	142295536	+	615.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001190852, intron 7 of 15)	intron (NM_001190852, intron 7 of 15)	96414.0	NM_022554	56376.0	Mm.117709	NM_019808	ENSMUSG00000028273	Pdlim5	1110001A05Rik|AI987914|C87059|Enh|Enh1|Enh2|Enh3|LIM	PDZ and LIM domain 5	protein-coding	2.61137820528553	3.04451163405491	3.68101485339858	2.75878496883552	2.16243637461323	1.52624168696648	3.21798545683167	2.11683968181164	-1.2474577705071	0.121892636436593	0.547245267450283
Merged-chr2-90517307-3	chr2	90517209	90517409	+	740.688904	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	-38135.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	-1.58994551673671	-1.55912852307891	-1.56844783632235	-1.57610299769523	-1.18549093183599	-1.55710898902261	-1.56633814807757	-1.57473272746952	1.78703309985663	0.610309988231842	1
Merged-chr3-51481697-2	chr3	51481597	51481797	+	577.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D11|SINE|Alu	-2269.0	NM_016858	19338.0	Mm.1664	NM_016858	ENSMUSG00000027739	Rab33b	-	RAB33B, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-10922292-2	chr8	10922192	10922392	+	627.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6165.0	NR_030715	665306.0	Mm.358758	NR_030715	ENSMUSG00000038917	3930402G23Rik	-	RIKEN cDNA 3930402G23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-66577976-3	chr15	66577866	66578066	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081409, intron 1 of 20)	CpG	394.0	NM_001081409	239510.0	Mm.267473	NM_178718	ENSMUSG00000072501	Phf20l1	CGI-72|E130113K22Rik	PHD finger protein 20-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55803985-2	chr19	55803846	55804046	+	554.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001331146, intron 4 of 14)	intron (NM_001331146, intron 4 of 14)	62136.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.84841146239366	0.455400894933286	1.45549938619179	0.438282298629001	0.427566204316867	1.00910396024727	0.818041133236158	0.62747269717444	-0.698614921306559	0.677172994600734	1
Merged-chr1-138244640-4	chr1	138244514	138244714	+	901.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29124.0	NM_177397	338375.0	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132040306-5	chr4	132040176	132040376	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183428, intron 1 of 20)	intron (NM_183428, intron 1 of 20)	8802.0	NM_001128606	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25790301-1	chr7	25790201	25790401	+	543.0	f1_balb.idr	Intergenic	Intergenic	-1568.0	NM_001190975	26362.0	Mm.4128	NM_009465	ENSMUSG00000002602	Axl	AI323647|Ark|Tyro7|Ufo	AXL receptor tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-10392588-1	chr17	10392488	10392688	+	1000.0	f0_c57.idr	Intergenic	Intergenic	-63628.0	NR_077239	319750.0	Mm.383485	NR_077237	ENSMUSG00000089633	A230009B12Rik	-	RIKEN cDNA A230009B12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-9658878-2	chr3	9658778	9658978	+	547.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17A|LTR|ERVK	-48793.0	NM_133218	170753.0	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	-0.499940950918087	-0.487518524828365	0.0891561271406926	-0.494726023626598	-0.499164980458282	-0.486601867615524	0.100277611126392	-0.494177430718284	0.0410194320726077	0.98816738256539	1
Merged-chr16-42190438-3	chr16	42190396	42190596	+	956.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	112973.0	NR_105858	102466172.0		NR_105858	ENSMUSG00000098300	Mir6540	Gm27780|mir-6540|mmu-mir-6540	microRNA 6540	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-90198075-4	chr9	90197953	90198153	+	962.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003911, intron 23 of 23)	intron (NM_001003911, intron 23 of 23)	35075.0	NM_001311115	108153.0	Mm.102141	NM_001003911	ENSMUSG00000032363	Adamts7	ADAM-TS7|ADAMTS7B	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-155146845-4	chr1	155146740	155146940	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355062)	promoter-TSS (NM_001355062)	-26.0	NM_008209	15064.0	Mm.7580	NM_008209	ENSMUSG00000026471	Mr1	H2ls	major histocompatibility complex, class I-related	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-67227361-9	chr7	67227276	67227476	+	786.037048	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_175215, exon 3 of 3)	3' UTR (NM_175215, exon 3 of 3)	4760.0	NM_001191051	75099.0	Mm.121691	NM_175215	ENSMUSG00000043831	Lysmd4	4930506D23Rik	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-101329302-4	chr4	101329196	101329396	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	17731.0	NR_029537	387143.0		NR_029537	ENSMUSG00000065451	Mir101a	Mirn101|Mirn101a|miR-101|mir-101a	microRNA 101a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-63075905-2	chr14	63075805	63076005	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20832.0	NR_046019	72609.0	Mm.387101	NR_046019		2700070H01Rik	-	RIKEN cDNA 2700070H01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-10952781-2	chr8	10952681	10952881	+	572.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24324.0	NR_135302	665306.0	Mm.358758	NR_030715	ENSMUSG00000038917	3930402G23Rik	-	RIKEN cDNA 3930402G23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-155982929-3	chr1	155982848	155983048	+	886.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Charlie10a|DNA|hAT-Charlie	-9693.0	NM_001039184	74081.0	Mm.260247	NM_001039184	ENSMUSG00000033671	Cep350	4933409L06Rik|6430546F08Rik	centrosomal protein 350	protein-coding	0.38967365891767	0.147388915077345	0.314050144289647	0.838136616473843	0.131184911476753	0.148667109312001	0.318809149692198	0.557895996009081	-1.06812628415953	0.578058345436546	1
Merged-chr5-130029333-4	chr5	130029217	130029417	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007761)	promoter-TSS (NM_007761)	11.0	NM_007761	12909.0	Mm.18072	NM_007761	ENSMUSG00000025532	Crcp	AL022669	calcitonin gene-related peptide-receptor component protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-9130336-2	chr4	9130236	9130436	+	677.099976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-138957.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-34466037-4	chr4	34465933	34466133	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	-84582.0	NM_001007589	433693.0	Mm.389532	NM_026019	ENSMUSG00000028291	Akirin2	2700059D21Rik|AA114675|AA522011|AU019887|Akirin-2	akirin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-67356745-2	chr17	67356645	67356845	+	801.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2254.0	NM_001357625	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-89381932-4	chr4	89381846	89382046	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132431, intron 2 of 9)	intron (NR_132431, intron 2 of 9)	-70914.0	NM_007670	12579.0	Mm.423094	NM_007670	ENSMUSG00000073802	Cdkn2b	AV083695|INK4b|MTS2|p15|p15(INK4b)|p15INK4b	cyclin dependent kinase inhibitor 2B	protein-coding	4.34732532064703	3.5300843684393	4.49823618221357	3.17676110742135	4.95257515367217	4.86132943741456	4.83984187687386	4.74577801154923	1.07951054059455	0.0101829753894413	0.11020660010381
Merged-chr8-111821319-4	chr8	111821207	111821407	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011801, intron 5 of 6)	(A)n|Simple_repeat|Simple_repeat	33003.0	NM_011801	23837.0	Mm.279437	NM_011801	ENSMUSG00000031954	Cfdp1	AA408409|Bcnt|Bucentaur|Cfdp|cp27	craniofacial development protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122392278-4	chr5	122392210	122392410	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019824, intron 1 of 6)	intron (NM_019824, intron 1 of 6)	432.0	NM_019824	56378.0	Mm.275942	NM_019824	ENSMUSG00000029465	Arpc3	1110006A04Rik|p21-ARC|p21-Ar|p21Arc	actin related protein 2/3 complex, subunit 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-157571663-2	chr2	157571563	157571763	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5302.0	NM_016916	53619.0	Mm.480461	NM_016916	ENSMUSG00000067787	Blcap	AI462828|Bc10	bladder cancer associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-75923453-4	chr15	75923360	75923560	+	925.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	-1900.0	NM_025412	66194.0	Mm.250599	NM_025412	ENSMUSG00000022571	Pycrl	1110058B13Rik|2700073G24Rik|Pycr3	pyrroline-5-carboxylate reductase-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-34960051-1	chr18	34959951	34960151	+	541.0	f1_c57bl6.idr	Intergenic	RLTR19-int|LTR|ERVK	-5700.0	NM_010481	15526.0	Mm.209419	NM_010481	ENSMUSG00000024359	Hspa9	74kDa|Csa|Grp75|Hsc74|Hsp74|Hsp74a|Hspa9a|Mortalin|Mot-2|Mot2|Mthsp70|Pbp74	heat shock protein 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-100548145-4	chr4	100548024	100548224	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033773, intron 9 of 9)	intron (NM_001033773, intron 9 of 9)	69257.0	NM_001033773	381534.0	Mm.318133	NM_001033773	ENSMUSG00000069733	Ube2u	-	ubiquitin-conjugating enzyme E2U (putative)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-128635724-2	chr4	128635624	128635824	+	954.8333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17105.0	NM_205823	384059.0	Mm.331901	NM_205823	ENSMUSG00000062545	Tlr12	Gm1365|Tlr11	toll-like receptor 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45529708-4	chr7	45529611	45529811	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_148927, intron 1 of 19)	intron (NM_148927, intron 1 of 19)	3381.0	NM_148927	69217.0	Mm.274158	NM_148927	ENSMUSG00000040428	Plekha4	2410005C22Rik|C88169|Pepp1	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-99028737-3	chr13	99028638	99028838	+	733.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-44173.0	NM_027064	69382.0	Mm.45466	NM_027064	ENSMUSG00000045022	1700024P04Rik	H2bl1|Subh2bv	RIKEN cDNA 1700024P04 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-8863930-3	chr4	8863844	8864044	+	661.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001277149, exon 36 of 38)	exon (NM_001277149, exon 36 of 38)	112620.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	-2.18243820993087	-2.15538464093652	-2.16356586349869	-2.17028616330028	-2.18053909940952	-2.15361173587851	-2.16171381403791	-2.0403552525549	0.759018020146679	0.829933115115583	1
Merged-chr19-32757510-4	chr19	32757422	32757622	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008960)	promoter-TSS (NM_008960)	-55.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-105397665-4	chr14	105397557	105397757	+	956.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29902.0	NR_045859	71362.0	Mm.410781	NR_045859	ENSMUSG00000115548	5430440P10Rik	-	RIKEN cDNA 5430440P10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-94692681-4	chr11	94692545	94692745	+	767.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	11854.0	NM_001007584	432589.0	Mm.342314	NM_001007584	ENSMUSG00000056008	Gm11541	-	predicted gene 11541	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-56062290-2	chr8	56062190	56062390	+	702.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_080438, intron 4 of 9)	L1_Mus4|LINE|L1	121465.0	NM_080438	110304.0	Mm.307061	NM_080438	ENSMUSG00000038257	Glra3	-	glycine receptor, alpha 3 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-53308244-2	chr19	53308144	53308344	+	560.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-2262.0	NM_001008542	17859.0	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70632176-1	chr8	70632076	70632276	+	1000.0	f1_c57bl6.idr	promoter-TSS (NM_011819)	promoter-TSS (NM_011819)	-81.0	NM_011819	23886.0	Mm.31325	NM_011819	ENSMUSG00000038508	Gdf15	MIC-1|NAG-1|SBF	growth differentiation factor 15	protein-coding	2.45446837380732	2.79291584947716	1.13783553315149	3.76300459251379	1.7308616325349	2.47036134494071	1.45301528610496	1.10782856305446	-2.13467621368451	0.0385331777355372	0.279855367113181
Merged-chr4-132879688-2	chr4	132879573	132879773	+	837.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_133887, intron 1 of 8)	intron (NM_133887, intron 1 of 8)	4785.0	NM_133887	100226.0	Mm.28237	NM_133887	ENSMUSG00000028879	Stx12	AI850350|AU041521|Stx13	syntaxin 12	protein-coding	1.11729325788355	1.12119412072622	0.701145237331454	0.691191456204594	1.34184745526676	1.65270900778882	1.48131367370785	0.692939964002115	1.81017244864789	0.223451365465504	0.714791840691861
Merged-chr8-24437930-4	chr8	24437825	24438025	+	906.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_026931, exon 1 of 1)	3' UTR (NM_026931, exon 1 of 1)	1021.0	NM_026931	69068.0	Mm.25775	NM_026931	ENSMUSG00000056313	Tcim	1110065B09Rik|1810011O10Rik|AW121743|AW321058	transcriptional and immune response regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-75656650-4	chr7	75656525	75656725	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 8 of 36)	L1M4|LINE|L1	-191713.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	3.69764704080223	3.99982594667742	3.66318026787813	2.00209683604393	3.7822351908379	3.64983219063005	3.7651367194888	3.96279373280556	0.395941506820302	0.495043707103415	0.935773371251117
Merged-chr4-133198784-4	chr4	133198562	133198762	+	744.029785	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_153423)	TTS (NM_153423)	3007.0	NR_105984	102466215.0		NR_105984	ENSMUSG00000099202	Mir7017	Gm27945|mmu-mir-7017	microRNA 7017	ncRNA	1.29003322523792	1.71784266231472	1.21216160802629	1.81766977305503	1.15087779221133	1.73105029990876	1.39325735325012	1.72880087654797	-0.0508121054553018	0.964504952520609	0.998431161219273
Merged-chr10-94844945-3	chr10	94844847	94845047	+	568.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018797, intron 12 of 30)	intron (NM_018797, intron 12 of 30)	99631.0	NM_018797	54712.0	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-125391982-2	chr1	125391882	125392082	+	622.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001205385)	TTS (NM_001205385)	43745.0	NM_001205386	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-109904267-4	chr2	109904089	109904289	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033473, intron 4 of 4)	intron (NR_033473, intron 4 of 4)	9130.0	NR_033473	100038454.0	Mm.365649	NR_033473	ENSMUSG00000063751	Platr8	Gm13939	pluripotency associated transcript 8	ncRNA	-0.0537561189320331	0.588008355431609	-0.0423010221574301	-0.0466017730704309	-0.0526906444189953	0.475255500936552	0.431919964129183	-0.0458499776664008	0.561358323509641	0.804976176589681	1
Merged-chr7-101840125-4	chr7	101840028	101840228	+	994.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001303239, exon 6 of 6)	3' UTR (NM_001303239, exon 6 of 6)	-1902.0	NM_010567	16332.0	Mm.476000	NM_010567	ENSMUSG00000032737	Inppl1	51C|SHIP2	inositol polyphosphate phosphatase-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44245509-2	chr7	44245409	44245609	+	569.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-1213.0	NM_025880	668661.0	Mm.274492	NM_025880	ENSMUSG00000045411	2410002F23Rik	-	RIKEN cDNA 2410002F23 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-77799451-3	chr18	77799359	77799559	+	738.466675	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013831, intron 1 of 14)	B1F|SINE|Alu	-3069.0	NR_152167	619308.0	Mm.490456	NM_001033812		F830208F22Rik	-	RIKEN cDNA F830208F22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90466266-2	chr2	90466166	90466366	+	675.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 5 of 23)	intron (NM_008982, intron 5 of 23)	12908.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65561598-2	chr9	65561498	65561698	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153119, intron 3 of 5)	intron (NM_153119, intron 3 of 5)	18489.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-86665119-2	chr6	86665019	86665219	+	720.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010751, intron 2 of 5)	intron (NM_010751, intron 2 of 5)	4040.0	NM_010751	17119.0	Mm.279580	NM_010751	ENSMUSG00000001156	Mxd1	AW122478|Mad|Mad1	MAX dimerization protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-138322341-2	chr1	138322241	138322441	+	715.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48603.0	NM_177397	338375.0	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-99478766-4	chr4	99478652	99478852	+	990.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-177547.0	NM_010425	15221.0	Mm.4758	NM_010425	ENSMUSG00000067261	Foxd3	CWH3|Genesis|Hfh2	forkhead box D3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-73917861-2	chr17	73917761	73917961	+	657.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011723, intron 14 of 35)	intron (NM_011723, intron 14 of 35)	32335.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70371063-1	chr14	70370963	70371163	+	586.0	f0_balb.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-19639.0	NM_001135151	213053.0	Mm.270647	NM_144808	ENSMUSG00000022094	Slc39a14	FAD-123|ZIP-14|Zip14|fad123	solute carrier family 39 (zinc transporter), member 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-146300508-2	chr5	146300408	146300608	+	591.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153599, intron 12 of 12)	intron (NM_153599, intron 12 of 12)	69258.0	NM_153599	264064.0	Mm.260576	NM_153599	ENSMUSG00000029635	Cdk8	-	cyclin-dependent kinase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-42978267-3	chr4	42978160	42978360	+	623.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	8314.0	NM_026088	67317.0	Mm.478018	NM_026088	ENSMUSG00000028451	1700022I11Rik	-	RIKEN cDNA 1700022I11 gene	protein-coding	1.35179716426998	0.688991774098262	0.955969606876717	0.46958333090752	0.616659297699826	0.694570394961161	0.966209988368885	0.470763027776201	-1.15398851100859	0.473470804590706	1
Merged-chr8-46846673-2	chr8	46846573	46846773	+	922.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_152560, exon 8 of 8)	non-coding (NR_152560, exon 8 of 8)	106928.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-75164549-4	chr14	75164472	75164672	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008879, intron 1 of 16)	intron (NM_008879, intron 1 of 16)	28147.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-18671230-3	chr19	18671115	18671315	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026120, intron 1 of 7)	CpG	435.0	NM_026120	67383.0	Mm.306602	NM_026120	ENSMUSG00000024726	Carnmt1	2410127L17Rik	carnosine N-methyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-72689971-4	chr11	72689845	72690045	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009671)	promoter-TSS (NM_009671)	-57.0	NM_009671	11736.0	Mm.10313	NM_009671	ENSMUSG00000020790	Ankfy1	Ankhzn|ZFYVE14|mKIAA1255	ankyrin repeat and FYVE domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132555777-4	chr4	132555676	132555876	+	935.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8291.0	NM_001081211	19204.0	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-182383647-2	chr1	182383547	182383747	+	598.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-25520.0	NM_173378	209456.0	Mm.287450	NM_173378	ENSMUSG00000026510	Trp53bp2	53BP2|AI746547|ASPP2|PPP1R13A|Tp53bp2|X98550	transformation related protein 53 binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-60581077-4	chr19	60581003	60581203	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001172096)	promoter-TSS (NM_001172096)	-80.0	NM_001172096	78832.0	Mm.259026	NM_030197	ENSMUSG00000033417	Cacul1	2700078E11Rik|2810417M16Rik|9830127L17Rik|AI450346|D130033C15Rik	CDK2 associated, cullin domain 1	protein-coding	6.1235941691127	6.02476995028401	6.05288911214497	6.40390675355729	6.52904416700752	6.17368834107782	6.55278376704425	6.41454691159944	0.289492727148694	0.171169883911141	0.638755914366425
Merged-chr5-135196551-4	chr5	135196460	135196660	+	988.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011714, exon 2 of 19)	exon (NM_011714, exon 2 of 19)	9237.0	NM_011714	22385.0	Mm.40331	NM_011714	ENSMUSG00000002748	Baz1b	C87820|WSTF|Wbscr9	bromodomain adjacent to zinc finger domain, 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32381972-4	chr2	32381866	32382066	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198001)	promoter-TSS (NM_198001)	-51.0	NM_198001	73737.0	Mm.27608	NM_198001	ENSMUSG00000039195	1110008P14Rik	C79326	RIKEN cDNA 1110008P14 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-79198297-2	chr3	79198197	79198397	+	561.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14622.0	NR_045502	70924.0	Mm.444622	NR_045502	ENSMUSG00000104585	4921511C10Rik	-	RIKEN cDNA 4921511C10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-6222229-4	chr4	6222137	6222337	+	975.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31132.0	NM_026534	68053.0	Mm.404043	NM_026534	ENSMUSG00000028243	Ubxn2b	3110003A22Rik|6430407D20Rik|AI451665|p37	UBX domain protein 2B	protein-coding	7.45864315308383	7.89942668940726	8.12821801935225	7.73026067078824	4.32358833986601	5.65499482134837	5.5489540232342	5.01609655986849	-2.79638273292224	2.08689987180897e-30	1.2519312330982e-26
Merged-chr18-62976055-2	chr18	62975955	62976155	+	722.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-1861.0	NM_028017	108123.0	Mm.292687	NM_028017	ENSMUSG00000024581	Napg	2400003O04Rik|SNARE	N-ethylmaleimide sensitive fusion protein attachment protein gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-67138455-2	chr6	67138355	67138555	+	753.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-101048.0	NM_007836	13197.0	Mm.72235	NM_007836	ENSMUSG00000036390	Gadd45a	AA545191|Ddit1|GADD45	growth arrest and DNA-damage-inducible 45 alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80623178-3	chr10	80623062	80623262	+	914.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134002, intron 1 of 10)	intron (NM_134002, intron 1 of 10)	382.0	NM_134002	103236.0	Mm.29873	NM_134002	ENSMUSG00000003345	Csnk1g2	2810429I12Rik|AI463719	casein kinase 1, gamma 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-164865559-2	chr2	164865459	164865659	+	593.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR31F_MM|LTR|ERVK	-7851.0	NM_011125	18830.0	Mm.6105	NM_011125	ENSMUSG00000017754	Pltp	Bpife|OD107	phospholipid transfer protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-8854968-2	chr4	8854868	8855068	+	805.166687	f1_balb.idr|f1_c57bl6.idr	exon (NM_001277149, exon 31 of 38)	exon (NM_001277149, exon 31 of 38)	103644.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101610564-1	chr11	101610464	101610664	+	794.0	f0_balb.idr	promoter-TSS (NM_001256318)	promoter-TSS (NM_001256318)	-136.0	NM_001256318	666331.0	Mm.303457	NM_001256318		LOC666331	-	uncharacterized LOC666331	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-17307552-3	chr6	17307456	17307656	+	759.0888669999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001243064)	promoter-TSS (NM_001243064)	-84.0	NM_001243064	12389.0	Mm.28278	NM_007616	ENSMUSG00000007655	Cav1	Cav|Cav-1	caveolin 1, caveolae protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-62500125-4	chr4	62499995	62500195	+	611.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024257, intron 1 of 1)	intron (NM_024257, intron 1 of 1)	2105.0	NM_024257	72748.0	Mm.41506	NM_024257	ENSMUSG00000038422	Hdhd3	2810435D12Rik	haloacid dehalogenase-like hydrolase domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-95100526-2	chr8	95100426	95100626	+	576.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_028805)	TTS (NM_028805)	12816.0	NM_001145832	16582.0	Mm.378951	NM_010631	ENSMUSG00000031788	Kifc3	AI325457|BB123200	kinesin family member C3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-57243826-3	chr12	57243728	57243928	+	777.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164370, intron 1 of 9)	ORR1B1|LTR|ERVL-MaLR	13403.0	NM_001164370	73490.0	Mm.268180	NM_001164370	ENSMUSG00000047022	Mipol1	1700081O04Rik|6030439O22Rik|AU021838|AW536152|D12Ertd19e	mirror-image polydactyly 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-10722798-3	chr17	10722707	10722907	+	921.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027032, intron 2 of 4)	intron (NM_027032, intron 2 of 4)	117384.0	NM_027032	69310.0	Mm.18889	NM_027032	ENSMUSG00000037196	Pacrg	1700008H23Rik	PARK2 co-regulated	protein-coding	-0.366626417179347	-0.352692175281507	-0.357249875608969	0.28625245588711	-0.365754612910758	-0.35166575818681	-0.356244039914784	0.294119739107777	0.0282770312316891	0.991511101680898	1
Merged-chr14-36862300-7	chr14	36862058	36862258	+	821.642883	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57377.0	NM_001347503	72972.0	Mm.27621	NM_027045	ENSMUSG00000058690	Ccser2	1700012P13Rik|2900054P12Rik|AI035535|AW108503|Fam190b|Gcap14	coiled-coil serine rich 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-122156192-5	chr2	122156229	122156429	+	952.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026251, intron 2 of 17)	intron (NM_026251, intron 2 of 17)	-4371.0	NM_080510	70928.0	Mm.379188	NM_080510	ENSMUSG00000033368	Trim69	4921519C19Rik|Rnf36|Trif|Trimless	tripartite motif-containing 69	protein-coding	1.81678888171919	2.46482212041424	1.56339994237569	1.36771939458912	1.72387488006308	1.62016422475096	1.20628578523884	2.3425287755685	-0.265756833814329	0.811132874755675	0.998431161219273
Merged-chr5-76779325-1	chr5	76779225	76779425	+	805.0	f0_balb.idr	Intergenic	Intergenic	-61274.0	NM_001163793	320827.0	Mm.101504	NM_001163793	ENSMUSG00000036377	C530008M17Rik	2810489J07Rik|4930529A19Rik|4931405B09Rik|Kiaa1211|mKIAA1211	RIKEN cDNA C530008M17 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-129575954-4	chr7	129575826	129576026	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15937.0	NM_172255	207425.0	Mm.229323	NM_172255	ENSMUSG00000042055	Wdr11	2900055P10Rik|AW489876|Brwd2|mKIAA1351	WD repeat domain 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-144928079-2	chr4	144927979	144928179	+	847.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001172424, exon 7 of 7)	3' UTR (NM_001172424, exon 7 of 7)	34942.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-21129010-2	chr1	21128910	21129110	+	584.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-49785.0	NM_177409	170829.0	Mm.185680	NM_177409	ENSMUSG00000041779	Tram2	C330003D03Rik	translocating chain-associating membrane protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46885581-2	chr8	46885481	46885681	+	575.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-101306.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-33156982-4	chr12	33156885	33157085	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028139, intron 2 of 3)	MIRb|SINE|MIR	9299.0	NM_028139	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-36247177-4	chr8	36247086	36247286	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081150, intron 1 of 11)	intron (NM_001081150, intron 1 of 11)	2330.0	NM_001081150	244421.0	Mm.324032	NM_001081150	ENSMUSG00000039633	Lonrf1	-	LON peptidase N-terminal domain and ring finger 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-127086387-4	chr2	127086267	127086467	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026678, intron 4 of 7)	B2_Mm2|SINE|B2	15710.0	NM_026678	109778.0	Mm.22028	NM_026678	ENSMUSG00000001999	Blvra	0610006A11Rik|2500001N03Rik|Blvr	biliverdin reductase A	protein-coding	5.73800907462082	4.64626493989124	5.44852213023875	4.96179885642757	5.46535593858113	5.31928866664805	5.67118017127964	5.25296588673292	0.187138759546056	0.551937695118232	0.95940318976411
Merged-chr16-91545775-4	chr16	91545747	91545947	+	933.091675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1247.0	NM_008338	15980.0	Mm.249364	NM_008338	ENSMUSG00000022965	Ifngr2	Ifgr2|Ifgt	interferon gamma receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46627542-3	chr8	46627429	46627629	+	795.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001284409, intron 1 of 6)	intron (NM_001284409, intron 1 of 6)	10238.0	NM_009810	12367.0	Mm.34405	NM_009810	ENSMUSG00000031628	Casp3	A830040C14Rik|AC-3|CASP-3|CC3|CPP-32|CPP32|Caspase-3|Lice|SCA-1|Yama|mldy	caspase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-79298367-2	chr12	79298267	79298467	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252562, intron 1 of 7)	intron (NM_001252562, intron 1 of 7)	1016.0	NM_001252562	19363.0	Mm.341756	NM_009014	ENSMUSG00000059060	Rad51b	AI553500|R51H2|Rad51l1|mREC2	RAD51 paralog B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-79138120-4	chr12	79138018	79138218	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009705, intron 2 of 7)	MLT1A1|LTR|ERVL-MaLR	7330.0	NM_009705	11847.0	Mm.3506	NM_009705	ENSMUSG00000021125	Arg2	AII|AU022422	arginase type II	protein-coding	5.27014760625445	5.61450151909752	4.82839602006275	5.53674315053318	5.77587889886903	5.86855105814448	5.26509858098029	6.46181471021879	0.640437160147525	0.0377008528887818	0.276116293022075
Merged-chr4-32253861-2	chr4	32253761	32253961	+	816.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-163574.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-122729821-2	chr3	122729721	122729921	+	793.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153422, intron 1 of 20)	CpG	663.0	NM_153422	242202.0	Mm.134911	NM_153422	ENSMUSG00000053965	Pde5a	Cgbpde|Cn5n|PDE5a2|Pde5|Pde5a1	phosphodiesterase 5A, cGMP-specific	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-60929461-2	chr10	60929361	60929561	+	549.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_033616, intron 1 of 2)	intron (NR_033616, intron 1 of 2)	6438.0	NR_105835	102466158.0		NR_105835	ENSMUSG00000099279	Mir6408	Gm27451|mmu-mir-6408	microRNA 6408	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116102224-2	chr11	116102124	116102324	+	928.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger16a|DNA|TcMar-Tigger	8011.0	NM_001205081	217333.0	Mm.347770	NM_172570	ENSMUSG00000020773	Trim47	2210023F24Rik	tripartite motif-containing 47	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-45086389-2	chr13	45086289	45086489	+	860.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-84293.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-126975735-2	chr10	126975635	126975835	+	550.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2982.0	NM_001113470	52468.0	Mm.29490	NM_146012	ENSMUSG00000078429	Ctdsp2	AI586070|D10Ertd73e|OS-4|OS4|SCP2	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-32508977-8	chr3	32508892	32509092	+	961.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1558.0	NM_001161818	67778.0	Mm.285620	NM_144519	ENSMUSG00000027667	Zfp639	6230400O18Rik|ANC-2H01|ZASC1|Znf639	zinc finger protein 639	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-88005743-2	chr18	88005643	88005843	+	617.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	888464.0	NM_018821	54607.0	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21163328-2	chr9	21163228	21163428	+	651.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2386.0	NM_183408	18577.0	Mm.191749	NM_019798	ENSMUSG00000032177	Pde4a	D9Ertd60e|Dpde2	phosphodiesterase 4A, cAMP specific	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34052250-1	chr17	34052150	34052350	+	819.0	f1_balb.idr	intron (NM_009926, intron 17 of 63)	intron (NM_009926, intron 17 of 63)	13112.0	NM_001317722	12815.0	Mm.20230	NM_009926	ENSMUSG00000024330	Col11a2	-	collagen, type XI, alpha 2	protein-coding	1.38896065573245	0.271120800615319	0.262009389570995	0.254896478492296	0.801204570884376	0.27315851262613	0.2640292264732	0.873350013423312	-0.416185699497204	0.833653104135434	1
Merged-chr14-20848443-3	chr14	20848343	20848543	+	635.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11781.0	NM_008873	18792.0	Mm.4183	NM_008873	ENSMUSG00000021822	Plau	u-PA|uPA	plasminogen activator, urokinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-4792862-4	chr7	4792735	4792935	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009081)	promoter-TSS (NM_009081)	-130.0	NM_009081	19943.0	Mm.379002	NM_009081	ENSMUSG00000030432	Rpl28	D7Wsu21e	ribosomal protein L28	protein-coding	4.89945838920227	5.55597799707957	5.22406909947778	5.1283153813885	4.0661095884698	4.77368849369069	4.14274988687308	5.02256048172976	-0.793916545743149	0.0271914821820246	0.221733169383732
Merged-chr16-21412804-4	chr16	21412709	21412909	+	974.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10309.0	NM_001285893	209018.0	Mm.235683	NM_145948	ENSMUSG00000033653	Vps8	AI315068|AU040738|mKIAA0804	VPS8 CORVET complex subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-26756773-2	chr2	26756673	26756873	+	621.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25053.0	NM_001359164	105244099.0		NM_001359164		Gm39773	LCN16	predicted gene, 39773	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-29460700-2	chr19	29460600	29460800	+	612.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021396, intron 5 of 5)	MTC|LTR|ERVL-MaLR	49781.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-45941614-2	chr8	45941514	45941714	+	963.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001033246, exon 6 of 7)	exon (NM_001033246, exon 6 of 7)	6965.0	NM_001033246	212392.0	Mm.296649	NM_001033246	ENSMUSG00000071104	Ccdc110	Gm172	coiled-coil domain containing 110	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-47402712-2	chr19	47402612	47402812	+	912.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008018, intron 2 of 14)	intron (NM_008018, intron 2 of 14)	61699.0	NM_001164717	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	-0.487640233177009	-0.29597842692793	-0.48081455944684	-0.483389659485904	-0.23334242401453	-0.0044166597848686	-0.480076399843756	-0.327384504535317	2.3828119564871	0.328200505972165	1
Merged-chr1-165655794-2	chr1	165655694	165655894	+	800.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_178593, exon 6 of 7)	exon (NM_178593, exon 6 of 7)	-21253.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4139668-2	chr19	4139568	4139768	+	717.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144532)	promoter-TSS (NM_144532)	-59.0	NM_144532	73660.0	Mm.379226	NM_144532	ENSMUSG00000024842	Cabp4	2410038D05Rik	calcium binding protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-40410635-1	chr8	40410535	40410735	+	742.0	f0_balb.idr	Intergenic	Intergenic	-13180.0	NM_178395	70546.0	Mm.34326	NM_178395	ENSMUSG00000039470	Zdhhc2	5730415P04Rik|6430583A19Rik|DHHC-2	zinc finger, DHHC domain containing 2	protein-coding	-1.25043705834432	-1.22344025710165	-1.23393384777392	-1.24255359558995	-1.10155481940592	-1.22116625222791	-0.775165256172952	-1.24101066485209	2.4860994894339	0.452464134362524	1
Merged-chr2-75776745-3	chr2	75776642	75776842	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55435.0	NM_172666	228061.0	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-109986390-4	chr7	109986255	109986455	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153525)	promoter-TSS (NM_153525)	-125.0	NM_153525	233724.0	Mm.43212	NM_153525	ENSMUSG00000047554	Tmem41b	1500015G02Rik|1500031M19Rik|AU018901|D7Ertd70e|D7Ertd743e	transmembrane protein 41B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32864995-2	chr2	32864895	32865095	+	858.275024	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-11139.0	NM_146119	227737.0	Mm.301646	NM_146119	ENSMUSG00000026796	Fam129b	9130404D14Rik	family with sequence similarity 129, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-80314130-4	chr8	80314068	80314268	+	926.025024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-179877.0	NM_010369	14934.0	Mm.13123	NM_010369	ENSMUSG00000051839	Gypa	AI853584|CD235a|GPA	glycophorin A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120948487-4	chr11	120948412	120948612	+	967.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030696)	promoter-TSS (NM_030696)	28.0	NM_030696	80879.0	Mm.28632	NM_030696	ENSMUSG00000025161	Slc16a3	Mct3|Mct4	solute carrier family 16 (monocarboxylic acid transporters), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-67608314-4	chr5	67608234	67608434	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001033415, exon 1 of 2)	5' UTR (NM_001033415, exon 1 of 2)	451.0	NM_001033415	330096.0	Mm.442747	NM_001033415	ENSMUSG00000050010	Shisa3	D830007B15Rik	shisa family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-57100578-4	chr17	57100465	57100665	+	726.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033508, intron 3 of 3)	ID_B1|SINE|B4	-4820.0	NM_009404	21950.0	Mm.41171	NM_009404	ENSMUSG00000035678	Tnfsf9	4-1BB-L|4-1BBL|AI848817|Cd137l|Ly63l	tumor necrosis factor (ligand) superfamily, member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-48698201-2	chr6	48698101	48698301	+	585.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	10043.0	NM_153175	231931.0	Mm.321047	NM_153175	ENSMUSG00000047867	Gimap6	4833419H03Rik|Ian6|mFLJ00102	GTPase, IMAP family member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-116464331-4	chr4	116464219	116464419	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008641)	promoter-TSS (NM_008641)	-138.0	NM_008641	17776.0	Mm.9287	NM_008641	ENSMUSG00000003810	Mast2	MAST205|Mtssk	microtubule associated serine/threonine kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-14997791-4	chr8	14997700	14997900	+	883.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037736, intron 27 of 27)	intron (NM_001037736, intron 27 of 27)	-13225.0	NM_029116	74901.0	Mm.46675	NM_029116	ENSMUSG00000055675	Kbtbd11	2900016B01Rik|4930465M17Rik|mKIAA0711	kelch repeat and BTB (POZ) domain containing 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-86683482-4	chr4	86683379	86683579	+	866.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-13420.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	1.70987369091638	1.41635053989769	1.20127941903967	1.17628657912489	1.886300817526	1.84095964715357	1.20834095997374	1.48522320387864	0.844295446053683	0.463693652275302	0.922064436622467
Merged-chr2-72351533-4	chr2	72351457	72351657	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023057, intron 2 of 19)	intron (NM_023057, intron 2 of 19)	65856.0	NM_178084	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-24546478-4	chr8	24546377	24546577	+	791.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145949, intron 7 of 9)	intron (NM_145949, intron 7 of 9)	29856.0	NM_145949	209176.0	Mm.219580	NM_145949	ENSMUSG00000031549	Ido2	AI265623|C230043N17Rik|Ido-2|Indol1	indoleamine 2,3-dioxygenase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-58750208-4	chr15	58750110	58750310	+	957.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	73217.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-122485619-2	chr14	122485519	122485719	+	608.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153443, intron 1 of 24)	intron (NR_153443, intron 1 of 24)	1254.0	NR_153443	110821.0	Mm.23876	NM_144844	ENSMUSG00000041650	Pcca	C79630	propionyl-Coenzyme A carboxylase, alpha polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117955852-3	chr11	117955763	117955963	+	879.900024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13503.0	NM_007707	12702.0	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-3292215-3	chr11	3292092	3292292	+	696.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019574, intron 1 of 3)	intron (NM_019574, intron 1 of 3)	1735.0	NM_019574	56218.0	Mm.275563	NM_019574	ENSMUSG00000020453	Patz1	8430401L15Rik|AI447519|Mazr|Patz|Zfp278	POZ (BTB) and AT hook containing zinc finger 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-38288135-2	chr15	38288035	38288235	+	815.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	11765.0	NM_001357677	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-27193955-2	chr7	27193855	27194055	+	899.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285825, intron 2 of 6)	intron (NM_001285825, intron 2 of 6)	1805.0	NM_001046637	53607.0	Mm.386890	NM_015782	ENSMUSG00000061479	Snrpa	C430021M15Rik|Rnu1a-1|Rnu1a1|U1-A|U1A	small nuclear ribonucleoprotein polypeptide A	protein-coding	-1.50874880059862	-1.47511716453926	-1.4852876488768	-1.49364198752927	-1.50638792193216	-0.992828729615453	-1.48298527415345	-1.4921465649048	2.3185461113984	0.50391666537493	1
Merged-chr7-143764049-2	chr7	143763949	143764149	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_203492, exon 2 of 2)	3' UTR (NM_203492, exon 2 of 2)	2944.0	NM_203492	381974.0	Mm.297839	NM_203492	ENSMUSG00000050276	Mrgprg	Gm1098|Mrgg	MAS-related GPR, member G	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-20085433-3	chr16	20085331	20085531	+	654.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12123.0	NM_029436	75785.0	Mm.392450	NM_029436	ENSMUSG00000062901	Klhl24	1110046J11Rik|4930429H24Rik|6530402O20Rik|C85082	kelch-like 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-148597172-3	chr2	148597075	148597275	+	635.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-75440.0	NM_019761	56488.0	Mm.34663	NM_019761	ENSMUSG00000036992	Nxt1	1110001N02Rik	NTF2-related export protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134189956-4	chr6	134189851	134190051	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 3 of 8)	intron (NM_001303102, intron 3 of 8)	154251.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-125729956-4	chr8	125729846	125730046	+	967.091675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-4257.0	NM_025636	66566.0	Mm.25296	NM_025636	ENSMUSG00000031851	Ntpcr	2310079N02Rik|AI449709	nucleoside-triphosphatase, cancer-related	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-114299686-1	chr3	114299586	114299786	+	599.0	f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	269146.0	NM_007729	12814.0	Mm.209715	NM_007729	ENSMUSG00000027966	Col11a1	C530001D20Rik|cho	collagen, type XI, alpha 1	protein-coding	-0.734697168562934	-1.28094420828655	-1.29131886204401	-1.29984091153697	-1.31008363841169	-1.2786959775384	-1.28897026783925	-1.29831546875223	-2.42902550944018	0.482518537989684	1
Merged-chr5-67847521-4	chr5	67847407	67847607	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009727)	promoter-TSS (NM_009727)	-76.0	NM_001038999	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-91314428-3	chr12	91314339	91314539	+	642.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181815, intron 10 of 25)	intron (NM_181815, intron 10 of 25)	69970.0	NM_181815	75216.0	Mm.312204	NM_181815	ENSMUSG00000061533	Cep128	4930534B04Rik|5430424K18Rik|AI449708|AI480494|E230024F20	centrosomal protein 128	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-60323676-4	chr2	60323644	60323844	+	956.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013825, intron 24 of 34)	intron (NM_013825, intron 24 of 34)	-39260.0	NM_001290660	66205.0	Mm.227281	NM_025422	ENSMUSG00000060703	Cd302	1110055L24Rik|AI159627	CD302 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-58973904-2	chr15	58973804	58974004	+	773.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144800, intron 3 of 14)	B1_Mur1|SINE|Alu	40094.0	NM_023172	66218.0	Mm.322294	NM_023172	ENSMUSG00000022354	Ndufb9	1190008J14Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-93507813-4	chr2	93507710	93507910	+	859.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-44860.0	NM_001136055	12521.0	Mm.4261	NM_007656	ENSMUSG00000027215	Cd82	AA682076|AL023070|C33|IA4|Kai1|Tspan27	CD82 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105569758-2	chr8	105569658	105569858	+	583.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271806, intron 1 of 4)	B2_Mm2|SINE|B2	-1457.0	NM_007427	11604.0	Mm.441696	NM_007427	ENSMUSG00000005705	Agrp	Agrt|Art	agouti related neuropeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-90578963-2	chr18	90578863	90579063	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001362365)	promoter-TSS (NM_001362365)	-862.0	NM_001362365	108168395.0	Mm.391131	NM_001362365	ENSMUSG00000110277	Gm45871	-	predicted gene 45871	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-86064746-4	chr1	86064644	86064844	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_027357, exon 1 of 25)	5' UTR (NM_027357, exon 1 of 25)	125.0	NM_027357	70247.0	Mm.280013	NM_027357	ENSMUSG00000026229	Psmd1	2410026J11Rik|P112|S1	proteasome (prosome, macropain) 26S subunit, non-ATPase, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-83147732-1	chr8	83147632	83147832	+	632.0	f1_balb.idr	Intergenic	L1_Mus2|LINE|L1	-17620.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	1.55255410002037	1.26844779947322	1.82692785655288	2.13966989860973	2.13966535141085	2.04931147746632	2.32063481551559	2.24844972183894	1.24087045902381	0.206065571479722	0.693707835750198
Merged-chr1-52909884-3	chr1	52909709	52909909	+	848.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146108, intron 11 of 13)	intron (NM_146108, intron 11 of 13)	43031.0	NM_144953	67080.0	Mm.236287	NM_144953	ENSMUSG00000043629	1700019D03Rik	2410136C24Rik|AA410151|smAKAP	RIKEN cDNA 1700019D03 gene	protein-coding	1.57998031673494	2.19492715778146	2.76787597498787	1.87644526237126	2.3647677784265	2.8875219127131	3.20469328287289	3.17382135596094	1.5571590898473	0.0534020623315007	0.33847839990981
Merged-chr13-19855088-4	chr13	19854962	19855162	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30805.0	NM_181754	353346.0	Mm.239268	NM_181754	ENSMUSG00000053101	Gpr141	PGR13	G protein-coupled receptor 141	protein-coding	4.25186747059438	2.98412414177841	3.54823512175719	3.52977854019826	4.61354213687558	3.00813887714105	3.57639684716561	4.22050880757568	0.472781286105409	0.399184236455756	0.885176145862419
Merged-chr2-52220264-2	chr2	52220164	52220364	+	655.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010889, intron 85 of 156)	intron (NM_010889, intron 85 of 156)	-70738.0	NR_040620	78049.0	Mm.243883	NR_040620		4930573O16Rik	-	RIKEN cDNA 4930573O16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-52020700-4	chr14	52020601	52020801	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253694)	promoter-TSS (NM_001253694)	32.0	NM_001253696	69890.0	Mm.475652	NM_027248	ENSMUSG00000049295	Zfp219	2010302A17Rik|Znf219	zinc finger protein 219	protein-coding	1.8457458773352	2.75214960065672	2.26164708909336	2.31072989531208	2.55291542290248	1.88961698934872	2.00283205264866	2.08633919573848	-0.392117204288097	0.65162253470125	0.986312090581867
Merged-chr6-125349523-6	chr6	125349328	125349528	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011609)	promoter-TSS (NM_011609)	-295.0	NM_011609	21937.0	Mm.1258	NM_011609	ENSMUSG00000030341	Tnfrsf1a	CD120a|FPF|TNF-R|TNF-R-I|TNF-R1|TNF-R55|TNF-alphaR1|TNFAR|TNFR60|TNFRI|TNFRp55|TNFalpha-R1|Tnfr-2|Tnfr1|p55|p55-R	tumor necrosis factor receptor superfamily, member 1a	protein-coding	2.56084536616298	2.88189177710008	3.10612904440291	3.19054919740868	2.16990507344023	3.57259317001508	3.52859375289441	3.03460019850262	0.392100740449545	0.560021929682311	0.960321604678676
Merged-chr18-68163057-3	chr18	68162933	68163133	+	789.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172631, intron 3 of 5)	intron (NM_172631, intron 3 of 5)	-64913.0	NM_001357444	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	0.487630294464424	-0.0960127644108401	-0.102036034222854	-0.10670702753468	0.0462677565967317	0.787212154015317	-0.100704601858424	-0.105889478814222	0.976860618305975	0.666700762218115	1
Merged-chr16-57391574-4	chr16	57391478	57391678	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 1 of 4)	LSU-rRNA_Hsa|rRNA|rRNA	38301.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31395755-2	chr14	31395655	31395855	+	610.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347585, intron 2 of 7)	intron (NM_001347585, intron 2 of 7)	21922.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-82524805-2	chr18	82524705	82524905	+	545.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025245, intron 3 of 3)	intron (NM_001025245, intron 3 of 3)	-29658.0	NM_001025258	17196.0	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-25121997-2	chr8	25121897	25122097	+	551.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19818.0	NR_155282	74744.0	Mm.117802	NR_155282		5830408C22Rik	2700026D01Rik	RIKEN cDNA 5830408C22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72023383-2	chr6	72023283	72023483	+	635.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_046180, intron 1 of 2)	B4|SINE|B4	19145.0	NR_046180	330350.0	Mm.246787	NR_046180	ENSMUSG00000108356	9130221F21Rik	9130221F21	RIKEN cDNA 9130221F21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80729901-4	chr7	80729822	80730022	+	893.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016721, intron 28 of 37)	intron (NM_016721, intron 28 of 37)	-41045.0	NM_173863	70461.0	Mm.392175	NM_173863	ENSMUSG00000030527	Crtc3	2610312F20Rik|6332415K15Rik|AI429792|BC011210|TORC3	CREB regulated transcription coactivator 3	protein-coding	2.60677903701541	2.02737300591498	1.09809791530904	2.82302559929301	2.86310098173301	1.67460486334669	1.10581397160902	1.0752850124396	-0.775149745610053	0.512445730551002	0.945451213166439
Merged-chr4-102741678-1	chr4	102741578	102741778	+	584.0	f0_balb.idr	Intergenic	Intergenic	-18457.0	NM_001285860	73094.0	Mm.54201	NM_144906	ENSMUSG00000028524	Sgip1	3110007P09Rik|SGIP1alpha|gag	SH3-domain GRB2-like (endophilin) interacting protein 1	protein-coding	1.85556363776899	1.71658596306026	1.11924065693721	1.74370806629378	1.55356172331299	2.10369651830312	1.67379066741421	1.75246249976727	0.449715640567749	0.677266067233836	0.994756991104819
Merged-chr6-41605329-4	chr6	41605278	41605478	+	619.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146351)	promoter-TSS (NM_001146351)	-104.0	NM_001146351	13848.0	Mm.271976	NM_007680	ENSMUSG00000029869	Ephb6	Cekl|Mep	Eph receptor B6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-25463800-2	chr14	25463700	25463900	+	665.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	4615.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-88259859-4	chr7	88259760	88259960	+	863.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-18225.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-173337815-4	chr2	173337714	173337914	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61281.0	NM_022995	65112.0	Mm.73682	NM_022995	ENSMUSG00000038400	Pmepa1	2210418I02Rik|AW455466|Erg1.2|N4wbp4|Stag1|Tmepai	prostate transmembrane protein, androgen induced 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-72120100-4	chr6	72120010	72120210	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_045163)	TTS (NR_045163)	2830.0	NR_045163	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-27281268-6	chr3	27281205	27281405	+	664.722229	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35772.0	NM_009425	22035.0	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-53634229-2	chr10	53634129	53634329	+	602.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081428, intron 17 of 17)	intron (NM_001081428, intron 17 of 17)	-3790.0	NM_027830	71567.0	Mm.278221	NM_027830	ENSMUSG00000058298	Mcm9	9030408O17Rik|Gm235|Mcmdc1	minichromosome maintenance 9 homologous recombination repair factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21028551-2	chr9	21028451	21028651	+	624.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023892)	promoter-TSS (NM_023892)	-822.0	NM_023892	78369.0	Mm.30220	NM_023892	ENSMUSG00000001014	Icam4	1810015M19Rik|Cd242|ICAM-4	intercellular adhesion molecule 4, Landsteiner-Wiener blood group	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-63393037-3	chr17	63392950	63393150	+	777.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015794, intron 4 of 8)	intron (NM_015794, intron 4 of 8)	-80077.0	NR_130176	414079.0	Mm.444282	NR_130176	ENSMUSG00000090565	4930405O22Rik	-	RIKEN cDNA 4930405O22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101562635-4	chr11	101562530	101562730	+	992.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008676, intron 7 of 23)	B2_Mm2|SINE|B2	9976.0	NM_001252223	17966.0	Mm.784	NM_008676	ENSMUSG00000017119	Nbr1	mKIAA0049	neighbor of Brca1 gene 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-71223491-4	chr6	71223385	71223585	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160127, intron 6 of 9)	MLT1B|LTR|ERVL-MaLR	23606.0	NM_017399	14080.0	Mm.22126	NM_017399	ENSMUSG00000054422	Fabp1	Fabpl|L-FABP	fatty acid binding protein 1, liver	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24687473-4	chr17	24687374	24687574	+	864.1333619999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011522, intron 2 of 3)	CpG	2475.0	NM_011522	20974.0	Mm.26032	NM_011522	ENSMUSG00000007021	Syngr3	-	synaptogyrin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-33371454-2	chr5	33371354	33371554	+	664.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021500, intron 7 of 8)	intron (NM_021500, intron 7 of 8)	-7242.0	NR_153108	71101.0	Mm.132178	NM_027674	ENSMUSG00000037355	Uvssa	4933407H18Rik|D330017J19Rik|Kiaa1530|mKIAA1530	UV stimulated scaffold protein A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-102245339-4	chr7	102245209	102245409	+	868.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019566, intron 1 of 1)	intron (NM_019566, intron 1 of 1)	4809.0	NM_019566	56212.0	Mm.259795	NM_019566	ENSMUSG00000073982	Rhog	2810426G09Rik|Arhg|Sid10750	ras homolog family member G	protein-coding	-0.558891316947453	-0.547007468302191	0.131332304901646	-0.553903441349052	-0.558149224671819	-0.54613025540257	-0.550041153764933	-0.113622183070024	-0.838722488938556	0.765428088282218	1
Merged-chr2-165321698-4	chr2	165321607	165321807	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302752)	promoter-TSS (NM_001302752)	-881.0	NM_001302752	140579.0	Mm.35064	NM_080287	ENSMUSG00000017670	Elmo2	1190002F24Rik|CED-12	engulfment and cell motility 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-136567327-4	chr5	136567253	136567453	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_009986, exon 1 of 24)	5' UTR (NM_009986, exon 1 of 24)	137.0	NM_001291234	13047.0	Mm.320317	NM_009986	ENSMUSG00000029705	Cux1	CDP|Cutl1|Cux|Cux-1	cut-like homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-50285419-4	chr11	50285315	50285515	+	977.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175334, intron 1 of 4)	RLTR20B2|LTR|ERVK	6921.0	NM_175334	103806.0	Mm.51116	NM_175334	ENSMUSG00000050567	Maml1	AI644666|AW743257|D930008C07Rik|Mam-1|Mam1|mKIAA0200	mastermind like transcriptional coactivator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-124722077-4	chr8	124721989	124722189	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026855)	promoter-TSS (NM_026855)	-50.0	NM_026855	68865.0	Mm.22779	NM_026855	ENSMUSG00000031982	Arv1	1110067L22Rik|AI461928|AW121084	ARV1 homolog, fatty acid homeostasis modulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-24965383-4	chr7	24965258	24965458	+	825.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4717.0	NR_106013	102465633.0		NR_106013	ENSMUSG00000098802	Mir7046	Gm27469|mmu-mir-7046	microRNA 7046	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-109879224-2	chr7	109879124	109879324	+	822.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13545.0	NM_020052	56788.0	Mm.40447	NM_020052	ENSMUSG00000007279	Scube2	4932442O19Rik|Cegf1|Cegp1	signal peptide, CUB domain, EGF-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-100202240-2	chr15	100202140	100202340	+	873.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001159361, exon 31 of 38)	exon (NM_001159361, exon 31 of 38)	-14204.0	NR_037311	100499528.0		NR_037311	ENSMUSG00000092752	Mir3473a	Mir3473|mir-3473a|mmu-mir-3473|mmu-mir-3473a	microRNA 3473a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-43001282-3	chr10	43001173	43001373	+	759.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-10111.0	NR_153349	327749.0	Mm.428887	NR_153349		Gm5079	C230040G06	predicted gene 5079	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59811748-4	chr15	59811643	59811843	+	966.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16784.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-41135819-2	chr9	41135719	41135919	+	715.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_176860, intron 1 of 13)	intron (NM_176860, intron 1 of 13)	22243.0	NM_176860	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	-1.11017114721831	-1.22822901294121	-1.23870131823113	-1.24730358160035	-1.25495804221669	-1.22595962069861	-0.779877491848762	-1.24576378057011	1.43438402897066	0.669240522494923	1
Merged-chr2-12053894-4	chr2	12053776	12053976	+	918.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-247370.0	NR_040353	338535.0	Mm.483275	NR_040353	ENSMUSG00000086843	E030013I19Rik	-	RIKEN cDNA E030013I19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-24610208-2	chr16	24610108	24610308	+	583.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 5 of 12)	intron (NM_178665, intron 5 of 12)	80894.0	NR_038091	624582.0	Mm.439775	NR_038091		Morf4l1-ps1	A730098P11Rik	mortality factor 4 like 1, pseudogene 1	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-86473359-2	chr6	86473259	86473459	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_131126, intron 1 of 2)	intron (NR_131126, intron 1 of 2)	7471.0	NR_131125	320486.0	Mm.391625	NR_131125	ENSMUSG00000085589	A430078I02Rik	T25621	RIKEN cDNA A430078I02 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128719054-2	chr2	128718954	128719154	+	789.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 1 of 18)	intron (NM_008587, intron 1 of 18)	20139.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52598597-2	chr13	52598497	52598697	+	643.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_011518, intron 1 of 13)	intron (NM_011518, intron 1 of 13)	1715.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129480871-2	chr2	129480771	129480971	+	658.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177653, intron 1 of 6)	MTB|LTR|ERVL-MaLR	55731.0	NM_177653	228592.0	Mm.452175	NM_177653	ENSMUSG00000043727	F830045P16Rik	Sirpb3	RIKEN cDNA F830045P16 gene	protein-coding	-1.06997269762433	-1.30473905204845	-1.3145270772132	-1.32256725251374	-1.06385251204029	-1.30261794616352	-1.3123112828633	-1.32112806497905	0.0394047164033882	0.991001358494878	1
Merged-chr5-64964925-2	chr5	64964825	64965025	+	931.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4829.0	NM_011604	21899.0	Mm.42146	NM_011604	ENSMUSG00000051498	Tlr6	-	toll-like receptor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-33653471-4	chr8	33653383	33653583	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010344, exon 1 of 13)	5' UTR (NM_010344, exon 1 of 13)	245.0	NM_010344	14782.0	Mm.283573	NM_010344	ENSMUSG00000031584	Gsr	AI325518|D8Ertd238e|Gr-1|Gr1	glutathione reductase	protein-coding	5.75522043977148	5.92968187061981	5.45343982497595	5.40622252965446	5.30921179980565	5.70750910116726	5.51903585285185	5.56102134502195	-0.141644686815404	0.594129913770108	0.9706660979479
Merged-chr8-46083908-2	chr8	46083808	46084008	+	593.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_207213, intron 4 of 17)	intron (NM_207213, intron 4 of 17)	40238.0	NM_207213	102141.0	Mm.267258	NM_207213	ENSMUSG00000038291	Snx25	AI661919|Gm1699|Gm173|Sbbi31	sorting nexin 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-31082875-4	chr2	31082793	31082993	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355105, intron 6 of 15)	intron (NM_001355105, intron 6 of 15)	13607.0	NM_001177650	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-31559082-4	chr17	31558984	31559184	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR17|LTR|ERVK	-5689.0	NR_027493	18771.0	Mm.259295	NM_016670	ENSMUSG00000006705	Pknox1	D17Wsu76e|PREP1	Pbx/knotted 1 homeobox	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-75316798-4	chr1	75316565	75316765	+	826.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110831, intron 2 of 14)	intron (NM_001110831, intron 2 of 14)	352.0	NM_016878	13437.0	Mm.24680	NM_016878	ENSMUSG00000026209	Dnpep	AA407814	aspartyl aminopeptidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-60301467-2	chr10	60301367	60301567	+	917.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011179, intron 14 of 14)	intron (NM_011179, intron 14 of 14)	17006.0	NM_001146124	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5235097-2	chr17	5234997	5235197	+	591.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 4 of 19)	intron (NM_001085355, intron 4 of 19)	183670.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-118987396-2	chr14	118987268	118987468	+	879.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081252, intron 38 of 38)	B2_Mm1t|SINE|B2	49436.0	NM_008929	100037258.0	Mm.12616	NM_008929	ENSMUSG00000022136	Dnajc3	AA408985|AU067833|Dnajc3a|Dnajc3b|Prkri|mp58|p58|p58IPK	DnaJ heat shock protein family (Hsp40) member C3	protein-coding	0.205781831870321	0.234738991841331	1.35989093204655	0.950822422173802	0.662869766909832	0.23682523681539	0.227472372286975	0.219381650790215	-2.44356442512927	0.223650662127574	1
Merged-chr7-30728884-2	chr7	30728784	30728984	+	929.25	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001290631)	TTS (NM_001290631)	650.0	NM_027215	69804.0	Mm.27499	NM_027215	ENSMUSG00000006315	Tmem147	2010004E11Rik|5033425B17Rik|Nifie14	transmembrane protein 147	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-143741387-2	chr1	143741287	143741487	+	699.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038594, intron 1 of 3)	B1_Mus2|SINE|Alu	940.0	NM_001038594	69367.0	Mm.272727	NM_023505	ENSMUSG00000018196	Glrx2	1700010P22Rik|AI645710|Grx2	glutaredoxin 2 (thioltransferase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100712043-2	chr11	100711943	100712143	+	570.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038010, intron 1 of 17)	intron (NM_001038010, intron 1 of 17)	424.0	NM_001038010	14534.0	Mm.218837	NM_020004	ENSMUSG00000020918	Kat2a	1110051E14Rik|AW212720|Gcn5|Gcn5l2|mmGCN5	K(lysine) acetyltransferase 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-119318575-1	chr2	119318475	119318675	+	589.0	f1_c57bl6.idr	Intergenic	Intergenic	-7209.0	NM_019454	54485.0	Mm.143719	NM_019454	ENSMUSG00000027314	Dll4	Delta4	delta like canonical Notch ligand 4	protein-coding	0.142322005626028	-0.492493847883537	-0.496463179636412	-0.499525220410031	-0.503851692704211	0.0161089493760365	-0.495587766190779	-0.498990314992161	-0.432684795985333	0.876217714562587	1
Merged-chr4-46500892-2	chr4	46500792	46500992	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_053179, exon 5 of 6)	exon (NM_053179, exon 5 of 6)	11563.0	NM_053179	94181.0	Mm.249349	NM_053179	ENSMUSG00000028334	Nans	4632418E04Rik|BB056474|Sas	N-acetylneuraminic acid synthase (sialic acid synthase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-123932402-1	chr1	123932302	123932502	+	787.0	f0_balb.idr	intron (NM_199021, intron 1 of 25)	(TC)n|Simple_repeat|Simple_repeat	113157.0	NM_199021	269109.0	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70562419-4	chr11	70562317	70562517	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001045959)	promoter-TSS (NM_001045959)	-464.0	NM_001045964	50932.0	Mm.42967	NM_016713	ENSMUSG00000020827	Mink1	B55|MINK|Map4k6|Ysk2	misshapen-like kinase 1 (zebrafish)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-42464428-3	chr10	42464337	42464537	+	793.233337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359297, intron 1 of 11)	L2c|LINE|L2	14128.0	NM_001359297	215951.0	Mm.89646	NM_145743	ENSMUSG00000038302	Afg1l	CG8520|Lace1	AFG1 like ATPase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-53819013-4	chr11	53818892	53819092	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033332, intron 2 of 3)	intron (NR_033332, intron 2 of 3)	40264.0	NR_033332	622459.0	Mm.479656	NR_033332	ENSMUSG00000081769	Gm12216	602-19-115	predicted gene 12216	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-103342195-2	chr15	103342095	103342295	+	782.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2109.0	NM_013866	29813.0	Mm.14099	NM_013866	ENSMUSG00000000552	Zfp385a	Hzf|Zfp385|Znf385a	zinc finger protein 385A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70797497-3	chr8	70797390	70797590	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_106099)	promoter-TSS (NR_106099)	-645.0	NR_106099	102466823.0		NR_106099	ENSMUSG00000099031	Mir7240	Gm27487|mmu-mir-7240	microRNA 7240	ncRNA	3.87952012961482	4.13912203334077	4.60791569647704	4.02292641291463	4.65040496285962	4.1687418845079	4.88012963609591	3.68368252006925	0.310282829473515	0.481502954324943	0.929401318280257
Merged-chr14-31217846-2	chr14	31217746	31217946	+	765.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001025379)	promoter-TSS (NM_001025379)	-27.0	NM_001025379	218877.0	Mm.27812	NM_001025379	ENSMUSG00000021904	Sema3g	AK129018	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3G	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-56324375-1	chr8	56324275	56324475	+	707.0	f0_balb.idr	Intergenic	Intergenic	29823.0	NM_008278	15446.0	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	1.48748797940267	0.956941691730022	1.6207907393293	1.30022059254223	0.907663925727107	1.55432873947037	2.04406982879178	1.6940704019482	0.858815066392098	0.494472252235978	0.935679785535167
Merged-chr10-61366133-1	chr10	61366033	61366233	+	550.0	f1_balb.idr	intron (NM_013753, intron 1 of 19)	intron (NM_013753, intron 1 of 19)	17390.0	NM_013753	27355.0	Mm.269699	NM_013753	ENSMUSG00000020092	Pald1	MMPAL|Pald|mKIAA1274	phosphatase domain containing, paladin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-71806667-4	chr9	71806598	71806798	+	738.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-35096.0	NM_001304362	68178.0	Mm.99961	NM_026599	ENSMUSG00000032232	Cgnl1	4933421H10Rik|9930020M10Rik|AI503810|Jacop	cingulin-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-31559276-1	chr13	31559176	31559376	+	600.0	f0_balb.idr	exon (NM_008239, exon 1 of 1)	exon (NM_008239, exon 1 of 1)	1106.0	NM_008239	15220.0	Mm.44235	NM_008239	ENSMUSG00000038415	Foxq1	HFH-1|Hfh1|Hfh1l|sa	forkhead box Q1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-57790206-2	chr6	57790106	57790306	+	569.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146168, intron 1 of 4)	intron (NM_146168, intron 1 of 4)	34919.0	NM_146168	232023.0	Mm.24642	NM_146168	ENSMUSG00000037788	Vopp1	AW146242|Ecop	vesicular, overexpressed in cancer, prosurvival protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-75768177-2	chr14	75768077	75768277	+	782.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026232, intron 7 of 9)	intron (NM_026232, intron 7 of 9)	-13684.0	NM_177381	338337.0	Mm.86507	NM_177381	ENSMUSG00000034893	Cog3	E430004N23	component of oligomeric golgi complex 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75563596-2	chr11	75563489	75563689	+	874.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_173388, exon 9 of 14)	exon (NM_173388, exon 9 of 14)	12160.0	NR_039553	100628624.0		NR_039553	ENSMUSG00000093100	Mir3971	mmu-mir-3971|mu-mir-3971	microRNA 3971	ncRNA	-0.0520594035846317	-0.507539786449747	-0.511265653646284	-0.514135633058337	0.126383442287617	-0.506698995047892	-0.510444466537128	-0.513634547488846	0.613048320368843	0.827142336386976	1
Merged-chr4-12035057-3	chr4	12034965	12035165	+	897.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52892.0	NM_177861	329795.0	Mm.475125	NM_177861	ENSMUSG00000049488	Tmem67	5330408M12Rik|B230117O07|b2b1163.1Clo|b2b1291.1Clo	transmembrane protein 67	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-4594304-1	chr11	4594204	4594404	+	816.0	f0_balb.idr	intron (NM_028860, intron 1 of 17)	CpG	511.0	NM_028860	74302.0	Mm.425669	NM_028860	ENSMUSG00000034354	Mtmr3	1700092A20Rik|AI255150|AW557713|FYVE-DSP1|ZFYVE10|mKIAA0371	myotubularin related protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-139249621-4	chr7	139249577	139249777	+	887.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001098636, intron 1 of 2)	intron (NM_001098636, intron 1 of 2)	1195.0	NM_001098636	101631.0	Mm.334300	NM_001033206	ENSMUSG00000060260	Pwwp2b	AI594893|D7Ertd517e|D930023J19Rik|Pwwp2	PWWP domain containing 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-100915327-2	chr5	100915227	100915427	+	948.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	69098.0	NM_172715	231510.0	Mm.271911	NM_172715	ENSMUSG00000029314	Gpat3	1-AGPAT|1-AGPAT 9|4933407I02Rik|4933408F15|A230097K15Rik|Agpat9|GPAT-3|mGPAT3	glycerol-3-phosphate acyltransferase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35209538-4	chr17	35209457	35209657	+	747.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4206.0	NM_010735	16992.0	Mm.87787	NM_010735	ENSMUSG00000024402	Lta	LT|LT-[a]|LT-alpha|LT[a]|LTalpha|Ltx|TNF-beta|TNFSF1|Tnfb|Tnfsf1b|Tnlg1e|hlb382	lymphotoxin A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180255689-2	chr1	180255589	180255789	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001128605, intron 1 of 10)	intron (NM_001128605, intron 1 of 10)	611.0	NM_001128605	19165.0	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-47010445-1	chr4	47010345	47010545	+	767.0	f1_balb.idr	Intergenic	Intergenic	-18731.0	NM_001081141	242425.0	Mm.101909	NM_001081141	ENSMUSG00000039809	Gabbr2	GABABR2|Gb2|Gm425|Gpr51	gamma-aminobutyric acid (GABA) B receptor, 2	protein-coding	2.65119091964318	2.05236745410635	2.1402745179006	2.44381013216159	2.81185647747586	1.35072787458129	3.18075485799545	1.27842964645883	0.211449487816298	0.832254464553988	0.998431161219273
Merged-chr11-4600129-4	chr11	4600026	4600226	+	967.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-5311.0	NM_028860	74302.0	Mm.425669	NM_028860	ENSMUSG00000034354	Mtmr3	1700092A20Rik|AI255150|AW557713|FYVE-DSP1|ZFYVE10|mKIAA0371	myotubularin related protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-88702344-4	chr9	88702245	88702445	+	934.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359992, intron 2 of 2)	URR1B|DNA|hAT-Charlie	17242.0	NM_001359992	100039707.0	Mm.347377	NM_001128601	ENSMUSG00000079427	Mthfsl	Gm2382	5, 10-methenyltetrahydrofolate synthetase-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-5080155-4	chr7	5080026	5080226	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252454)	promoter-TSS (NM_001252454)	-109.0	NM_010147	13854.0	Mm.3091	NM_010147	ENSMUSG00000035203	Epn1	AA269831|Ibp1	epsin 1	protein-coding	6.15320510743709	5.74010655605431	5.76081689979245	6.5915965172012	6.43893312372924	6.37628019529035	6.3677415296685	6.98564569580545	0.494160941972321	0.0467658216934224	0.313111790556742
Merged-chr1-136459182-4	chr1	136459091	136459291	+	746.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8657.0	NM_001287179	381293.0	Mm.458468	NM_001081258	ENSMUSG00000041498	Kif14	D1Ertd367e|E130203M01	kinesin family member 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-99179772-4	chr10	99179641	99179841	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153333, intron 11 of 12)	intron (NR_153333, intron 11 of 12)	71606.0	NM_015737	14426.0	Mm.314	NM_015737	ENSMUSG00000090035	Galnt4	AV011803	polypeptide N-acetylgalactosaminyltransferase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-69664230-4	chr2	69664137	69664337	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028284, intron 9 of 11)	RSINE1|SINE|B4	-5883.0	NM_001081087	228003.0	Mm.178784	NM_001081087	ENSMUSG00000075307	Klhl41	Gm112|Kbtbd10|SARCOSIN	kelch-like 41	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-51892805-4	chr7	51892700	51892900	+	802.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001330607, intron 2 of 7)	intron (NM_001330607, intron 2 of 7)	13833.0	NM_001330607	14453.0	Mm.207360	NM_008087	ENSMUSG00000030498	Gas2	Gas-2	growth arrest specific 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-77971321-4	chr10	77971238	77971438	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1466.0	NM_138301	28240.0	Mm.276762	NM_138301	ENSMUSG00000009292	Trpm2	9830168K16Rik|C79133|LTRPC2|TRPC7|Trp7|Trrp7	transient receptor potential cation channel, subfamily M, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-21716829-4	chr13	21716731	21716931	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178206)	promoter-TSS (NM_178206)	419.0	NM_178182	319191.0	Mm.14767	NM_178182	ENSMUSG00000071516	Hist1h2ai	H2a-291A	histone cluster 1, H2ai	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-164878720-4	chr2	164878653	164878853	+	989.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146129)	promoter-TSS (NM_146129)	-615.0	NM_146129	228866.0	Mm.241134	NM_146129	ENSMUSG00000039849	Pcif1	2310022K11Rik|C20orf67|F730014I05Rik	PDX1 C-terminal inhibiting factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-102244057-4	chr7	102243944	102244144	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019566, intron 1 of 1)	intron (NM_019566, intron 1 of 1)	6074.0	NM_019566	56212.0	Mm.259795	NM_019566	ENSMUSG00000073982	Rhog	2810426G09Rik|Arhg|Sid10750	ras homolog family member G	protein-coding	4.46106556504688	4.19223716398643	3.84082974036493	4.67301967262171	3.77590497892748	4.46592196949256	3.70392017909891	4.40446870561212	-0.271537385370633	0.535142315836944	0.95286627222167
Merged-chr5-33219348-4	chr5	33219229	33219429	+	989.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1091.0	NM_133903	100689.0	Mm.34694	NM_133903	ENSMUSG00000037379	Spon2	2310045I24Rik|AI504350|M-spondin|Mindin|Mspondin	spondin 2, extracellular matrix protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-8741187-4	chr10	8741081	8741281	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 14 of 19)	intron (NM_175155, intron 14 of 19)	144889.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	3.06072271818691	1.53515711088757	2.17430832809552	2.74812366259968	3.02105056330566	3.37950590937593	2.94821298248842	2.12238698987142	0.795681727142243	0.327505279783932	0.830091967753047
Merged-chr11-69688267-2	chr11	69688167	69688367	+	743.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011614, intron 5 of 6)	intron (NM_011614, intron 5 of 6)	-2713.0	NM_023517	69583.0	Mm.8983	NM_023517	ENSMUSG00000089669	Tnfsf13	2310026N09Rik|April|Tall2|Tnlg7b|Trdl1	tumor necrosis factor (ligand) superfamily, member 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-96656398-2	chr10	96656298	96656498	+	552.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39397.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-24721032-3	chr4	24720943	24721143	+	870.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163020, intron 4 of 10)	intron (NM_001163020, intron 4 of 10)	130081.0	NM_001163020	212390.0	Mm.409581	NM_001033531	ENSMUSG00000040387	Klhl32	6430524H05Rik|D4Ertd389e|Gm1356|mKIAA1900	kelch-like 32	protein-coding	-2.18308165884198	-2.15547475440471	-2.16382331017202	-2.1706810624505	-2.18114370519566	-2.15366558754311	-2.03057248461154	-2.16945352807143	0.759018020146679	0.829933115115583	1
Merged-chr2-60904209-2	chr2	60904109	60904309	+	571.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	-22771.0	NM_001141931	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-105962827-4	chr12	105962732	105962932	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-47431.0	NM_011705	22367.0	Mm.2981	NM_011705	ENSMUSG00000021115	Vrk1	51PK	vaccinia related kinase 1	protein-coding	3.7945669149969	3.47965117104441	3.54579414644942	3.87221543674946	3.20831716615576	4.36151324828795	3.2831479958647	4.05975712615875	0.186933694435533	0.719784214733384	0.998431161219273
Merged-chr17-32546070-2	chr17	32545970	32546170	+	706.924988	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356302, intron 6 of 11)	L1_Mus3|LINE|L1	9513.0	NM_001356303	70101.0	Mm.30504	NM_024442	ENSMUSG00000048440	Cyp4f16	2310021J05Rik|AI746515	cytochrome P450, family 4, subfamily f, polypeptide 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-53771494-6	chr11	53771376	53771576	+	817.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159393, intron 2 of 9)	intron (NM_001159393, intron 2 of 9)	1003.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-141005410-2	chr5	141005310	141005510	+	850.9166869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-4814.0	NM_175362	108723.0	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-78194976-3	chr13	78194923	78195123	+	818.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010151, intron 2 of 2)	CpG	1426.0	NM_001347538	13865.0	Mm.439653	NM_010151	ENSMUSG00000069171	Nr2f1	COUP-TF1|COUP-TFI|COUPTFA|EAR-3|EAR3|Erbal3|SVP44|Tcfcoup1	nuclear receptor subfamily 2, group F, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-59236127-4	chr10	59236023	59236223	+	982.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14201.0	NM_172939	268301.0	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-47024696-2	chr7	47024596	47024796	+	881.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-16282.0	NM_175318	101685.0	Mm.155687	NM_175318	ENSMUSG00000049516	Spty2d1	5830435K17Rik|AI852426|P16H6	SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-51940043-2	chr2	51939943	51940143	+	605.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4880.0	NM_001355606	71684.0	Mm.28309	NM_030243	ENSMUSG00000036249	Rbm43	0610033I05Rik	RNA binding motif protein 43	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-51938951-1	chr1	51938851	51939051	+	934.0	f0_balb.idr	Intergenic	Intergenic	-22973.0	NM_010863	17912.0	Mm.3390	NM_010863	ENSMUSG00000018417	Myo1b	AA406997|MIH-L|MMIa	myosin IB	protein-coding	2.36791953114912	1.35126924123388	2.18914796678829	1.54414226328773	2.89172539704506	2.91568086643351	1.84047115914508	3.63029387912213	2.09183368937999	0.0193560577323331	0.175934833842827
Merged-chr11-54866522-5	chr11	54866452	54866652	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008248, exon 1 of 3)	exon (NM_008248, exon 1 of 3)	169.0	NM_008248	15254.0	Mm.425	NM_008248	ENSMUSG00000020267	Hint1	AA673479|Hint|Ipk1|PKCI-1|PRKCNH1	histidine triad nucleotide binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-31202792-2	chr6	31202692	31202892	+	832.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_110469, intron 1 of 3)	B2_Mm2|SINE|B2	15682.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-27106889-2	chr8	27106789	27106989	+	903.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_054044, intron 2 of 18)	intron (NM_054044, intron 2 of 18)	21048.0	NM_054044	78560.0	Mm.87046	NM_054044	ENSMUSG00000031486	Adgra2	8430414O08Rik|9530074E10Rik|Gpr124|Tem5|mKIAA1531	adhesion G protein-coupled receptor A2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-32818735-4	chr18	32818649	32818849	+	983.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021367, intron 4 of 4)	intron (NM_021367, intron 4 of 4)	1889.0	NR_033206	53603.0	Mm.143716	NM_021367	ENSMUSG00000024379	Tslp	-	thymic stromal lymphopoietin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-189660009-3	chr1	189659908	189660108	+	873.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081363, exon 12 of 18)	exon (NM_001081363, exon 12 of 18)	28078.0	NM_001081363	108000.0	Mm.129746	NM_001081363	ENSMUSG00000026605	Cenpf	6530404A22Rik|AI325968|CENF|Lek1|PRO1779|mitosin	centromere protein F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-21847179-1	chr14	21847079	21847279	+	661.0	f1_balb.idr	promoter-TSS (NM_176925)	promoter-TSS (NM_176925)	-399.0	NM_176925	319486.0	Mm.390671	NM_176925	ENSMUSG00000090564	A430057M04Rik	-	RIKEN cDNA A430057M04 gene	protein-coding	-0.118206791453547	-0.424833276597862	-0.427587220469204	-0.429688363680013	-0.311029253393514	-0.424207729819383	-0.144858215006162	-0.169126222649186	0.986031039976182	0.687610496363091	1
Merged-chr17-3448910-2	chr17	3448816	3449016	+	736.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_011878, intron 10 of 26)	intron (NM_011878, intron 10 of 26)	-33399.0	NM_001286758	24001.0	Mm.137134	NM_011878	ENSMUSG00000023800	Tiam2	3000002F19Rik|STEF|mKIAA2016	T cell lymphoma invasion and metastasis 2	protein-coding	2.05264052187898	2.35089187776552	1.10105200030807	2.18391700180817	1.20612577026111	0.87288885610669	0.849872861347686	0.829486426201084	-3.9725807341915	0.00560323520410126	0.072704703654081
Merged-chr17-36229217-2	chr17	36229117	36229317	+	727.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28629.0	NM_026308	67676.0	Mm.27131	NM_026308	ENSMUSG00000024446	Rpp21	0610037N01Rik	ribonuclease P 21 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117599294-2	chr11	117599194	117599394	+	908.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11953.0	NR_015489	78403.0	Mm.212543	NR_015489		2900041M22Rik	-	RIKEN cDNA 2900041M22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-33934157-2	chr13	33934057	33934257	+	567.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001243192, intron 2 of 7)	intron (NM_001243192, intron 2 of 7)	-1875.0	NR_040707	68808.0	Mm.443347	NR_040707	ENSMUSG00000085457	1110046J04Rik	-	RIKEN cDNA 1110046J04 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-31081437-4	chr6	31081332	31081532	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18339.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-40301508-4	chr10	40301451	40301651	+	987.091675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009665, intron 1 of 7)	CpG	635.0	NM_007444	100041585.0	Mm.476925	NM_007444	ENSMUSG00000063953	Amd2	AdoMetDC|Amd1|Amd3	S-adenosylmethionine decarboxylase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117777151-2	chr11	117777051	117777251	+	937.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_145439, intron 5 of 19)	MTE2a|LTR|ERVL-MaLR	2497.0	NR_154387	217353.0	Mm.286963	NM_145439	ENSMUSG00000025572	Tmc6	D11Ertd204e|EVER1	transmembrane channel-like gene family 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-87708067-2	chr16	87707967	87708167	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007520, intron 1 of 4)	intron (NM_007520, intron 1 of 4)	9113.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-16307161-3	chr9	16307049	16307249	+	748.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080814, intron 1 of 24)	MTE2b|LTR|ERVL-MaLR	71082.0	NM_001080814	270120.0	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT atypical cadherin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-143472205-4	chr5	143472079	143472279	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144915, intron 2 of 14)	intron (NM_144915, intron 2 of 14)	7686.0	NM_144915	231871.0	Mm.469963	NM_144915	ENSMUSG00000039206	Daglb	E330036I19Rik	diacylglycerol lipase, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19222347-1	chr7	19222247	19222447	+	768.0	f1_c57bl6.idr	exon (NM_175668, exon 2 of 2)	exon (NM_175668, exon 2 of 2)	-6042.0	NM_207525	403187.0	Mm.239583	NM_207525	ENSMUSG00000052214	Opa3	D630048P19Rik|Gm1425|Gm472	optic atrophy 3	protein-coding	0.509272846594801	1.75043361130752	0.158763573984196	0.867773920607195	0.134303449774098	0.174139073943278	0.161570989402192	0.150555000890736	-4.71468318190841	0.0113713479049378	0.119051860526565
Merged-chr10-41839114-3	chr10	41839014	41839214	+	808.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162908, intron 1 of 9)	intron (NM_001162908, intron 1 of 9)	28540.0	NM_001162908	140742.0	Mm.139418	NM_001013370	ENSMUSG00000038332	Sesn1	1110002G11Rik|AU044290|Pa26|Sest1	sestrin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-132180576-4	chr2	132180476	132180676	+	918.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35256.0	NM_001355430	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-143082377-2	chr7	143082277	143082477	+	802.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_020277, exon 12 of 25)	exon (NM_020277, exon 12 of 25)	12265.0	NM_020277	56843.0	Mm.286668	NM_020277	ENSMUSG00000009246	Trpm5	9430099A16Rik|LTrpC-5|Ltrpc5|Mtr1	transient receptor potential cation channel, subfamily M, member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-21389286-4	chr16	21389180	21389380	+	935.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	AT_rich|Low_complexity|Low_complexity	-33838.0	NM_001285893	209018.0	Mm.235683	NM_145948	ENSMUSG00000033653	Vps8	AI315068|AU040738|mKIAA0804	VPS8 CORVET complex subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-58475649-3	chr13	58475554	58475754	+	945.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72311.0	NM_001301341	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-3687627-1	chr9	3687527	3687727	+	632.0	f1_balb.idr	intron (NM_001033322, intron 4 of 7)	L1_Mus2|LINE|L1	155278.0	NM_001033322	234889.0	Mm.91240	NM_001033322	ENSMUSG00000041624	Gucy1a2	6330407I18Rik|A230060L24Rik	guanylate cyclase 1, soluble, alpha 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88677535-4	chr3	88677434	88677634	+	897.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MYSERV6-int|LTR|ERVK	-8253.0	NM_028814	74200.0	Mm.251800	NM_028814	ENSMUSG00000028060	2810403A07Rik	A430106P18Rik|AI256352|AI451678|Blom7|Khdc4|Kiaa0907	RIKEN cDNA 2810403A07 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124715301-4	chr5	124715202	124715402	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011596, intron 14 of 19)	intron (NM_011596, intron 14 of 19)	-9783.0	NM_019536	56087.0	Mm.261014	NM_019536	ENSMUSG00000038011	Dnah10	Dnahc10	dynein, axonemal, heavy chain 10	protein-coding	5.21033792775611	3.99222510859201	5.54812169123513	4.5950528894397	4.57447041009056	3.49507790556402	6.05589135449493	4.6622853920335	0.0567857459772518	0.937217215837845	0.998431161219273
Merged-chr12-111708782-2	chr12	111708682	111708882	+	774.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_027404)	TTS (NM_027404)	4171.0	NM_001324481	70369.0	Mm.44239	NM_027404	ENSMUSG00000049792	Bag5	1600025G07Rik|4930405J06Rik|Bag-5	BCL2-associated athanogene 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71158385-2	chr17	71158285	71158485	+	682.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25147.0	NM_001357791	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-21658818-4	chr5	21658714	21658914	+	931.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026034, intron 4 of 5)	intron (NM_026034, intron 4 of 5)	12830.0	NM_026034	67211.0	Mm.260782	NM_026034	ENSMUSG00000038525	Armc10	2810037C14Rik|Svh	armadillo repeat containing 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-25583402-2	chr2	25583302	25583502	+	848.8333130000001	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001024616, exon 15 of 15)	3' UTR (NM_001024616, exon 15 of 15)	-3303.0	NM_001005424	381353.0	Mm.379511	NM_001005424	ENSMUSG00000029419	Gm996	Ajm1	predicted gene 996	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-38123408-2	chr7	38123308	38123508	+	812.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15918.0	NM_007633	12447.0	Mm.16110	NM_007633	ENSMUSG00000002068	Ccne1	AW538188|CycE1	cyclin E1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-64046678-2	chr14	64046578	64046778	+	948.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38732.0	NM_001081063	71037.0	Mm.19977	NM_001081063	ENSMUSG00000034623	Prss55	4933401F05Rik	protease, serine 55	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-102717029-2	chr9	102716929	102717129	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019764)	promoter-TSS (NM_019764)	-775.0	NM_019764	56332.0	Mm.21145	NM_019764	ENSMUSG00000032531	Amotl2	AW549739|C79691|Lccp|MASCOT|mKIAA0989	angiomotin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-30596220-2	chr3	30596120	30596320	+	806.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_029690)	TTS (NM_029690)	3650.0	NM_029690	76652.0	Mm.116928	NM_029690	ENSMUSG00000037737	Actrt3	1700119I24Rik|ARP-T3|Arpm1	actin related protein T3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-32112644-2	chr19	32112544	32112744	+	756.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9504.0	NM_018830	54447.0	Mm.491229	NM_018830	ENSMUSG00000024887	Asah2	AI585898	N-acylsphingosine amidohydrolase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120820589-2	chr8	120820489	120820689	+	673.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	81950.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-79308055-2	chr11	79307955	79308155	+	617.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-31837.0	NM_010897	18015.0	Mm.255596	NM_010897	ENSMUSG00000020716	Nf1	AW494271|Dsk9|E030030H24Rik|Mhdadsk9|Nf-1	neurofibromin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-46498582-1	chr4	46498482	46498682	+	560.0	f1_c57bl6.idr	intron (NM_053179, intron 2 of 5)	intron (NM_053179, intron 2 of 5)	9253.0	NM_053179	94181.0	Mm.249349	NM_053179	ENSMUSG00000028334	Nans	4632418E04Rik|BB056474|Sas	N-acetylneuraminic acid synthase (sialic acid synthase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-17212556-2	chr4	17212456	17212656	+	554.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-640337.0	NR_135158	17389.0	Mm.187315	NM_019724	ENSMUSG00000028226	Mmp16	MT-MMP 3|MT3-MMP|Mt3mmp	matrix metallopeptidase 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70342376-4	chr8	70342245	70342445	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030680, intron 3 of 23)	intron (NM_030680, intron 3 of 23)	10934.0	NM_030680	19704.0	Mm.258280	NM_030680	ENSMUSG00000058301	Upf1	B430202H16Rik|NORF1|PNORF-1|Rent1|Upflp	UPF1 regulator of nonsense transcripts homolog (yeast)	protein-coding	1.78153410175977	2.73087466374892	2.2192532823745	1.2618639765011	2.05902207232088	2.75154792379343	2.56658071116456	1.71543062416424	0.501972778395978	0.602365625392712	0.973565005745828
Merged-chr6-29360388-4	chr6	29360282	29360482	+	953.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_184053, intron 2 of 6)	intron (NM_184053, intron 2 of 6)	12276.0	NM_007594	12321.0	Mm.392075	NM_007594	ENSMUSG00000029767	Calu	9530075H20Rik	calumenin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-79870604-4	chr11	79870469	79870669	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	91818.0	NM_144826	216987.0	Mm.274961	NM_144826	ENSMUSG00000035575	Utp6	4732497O03Rik|HCA66	UTP6 small subunit processome component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-181211539-4	chr1	181211337	181211537	+	996.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_145514, exon 1 of 14)	exon (NM_145514, exon 1 of 14)	541.0	NM_145514	226757.0	Mm.289082	NM_145514	ENSMUSG00000038733	Wdr26	1600024A01Rik|AA693241|AI447817|AU044014|C77982|Gid7	WD repeat domain 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-150629535-2	chr2	150629435	150629635	+	575.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_080575, intron 6 of 13)	intron (NM_080575, intron 6 of 13)	-20968.0	NM_001356492	71881.0	Mm.26599	NM_027977	ENSMUSG00000033096	Apmap	2310001A20Rik|AI314817	adipocyte plasma membrane associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-30778488-4	chr10	30778389	30778589	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358842, intron 1 of 14)	intron (NM_001358842, intron 1 of 14)	24837.0	NM_001358841	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-107467308-5	chr11	107467172	107467372	+	847.2000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 1 of 9)	intron (NR_153311, intron 1 of 9)	3448.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	0.358840670450922	0.030386665139799	0.0258736590340959	0.41187442560053	0.366817426592572	0.0314077314751966	0.0268666928548457	0.417380277679181	0.0348560535760958	0.986867547413466	1
Merged-chr11-32358598-4	chr11	32358502	32358702	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177364, intron 1 of 12)	MIR|SINE|MIR	10791.0	NM_177364	268396.0	Mm.227616	NM_177364	ENSMUSG00000040711	Sh3pxd2b	G431001E03Rik|TSK4|fad49	SH3 and PX domains 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-40762068-1	chr9	40761968	40762168	+	611.0	f0_balb.idr	intron (NM_133733, intron 2 of 6)	intron (NM_133733, intron 2 of 6)	-39205.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	2.22921655104239	3.71920027524016	1.5423026382887	2.36352033092171	3.56928857995029	3.28927867181024	2.87121537707308	3.51796837243787	1.03108087580212	0.177960853684668	0.648362827425708
Merged-chr4-134000944-4	chr4	134000828	134001028	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026144)	promoter-TSS (NM_026144)	-64.0	NM_026144	67422.0	Mm.100290	NM_026144	ENSMUSG00000012117	Dhdds	3222401G21Rik|CIT|DS|HDS|W91638	dehydrodolichyl diphosphate synthase	protein-coding	7.3309635298349	7.34380634605693	7.18868335234226	6.56997905314304	7.03607129512451	6.4752539466016	6.95963463244371	6.98421034720223	-0.268367366927068	0.187522962049479	0.664995221281668
Merged-chr14-47188889-4	chr14	47188785	47188985	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008102, intron 1 of 5)	CpG	528.0	NM_008102	14528.0	Mm.10651	NM_008102	ENSMUSG00000037580	Gch1	GTP-CH|GTP-CH-I|GTPCH|Gch	GTP cyclohydrolase 1	protein-coding	3.1104262726748	2.67359817177844	2.98235747678217	4.16112441076314	3.21351231552633	3.51185065298641	2.7507789710494	3.29467039064905	-0.25563514113332	0.68724639286309	0.996533206832645
Merged-chr12-21287479-4	chr12	21287377	21287577	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018813, intron 1 of 17)	intron (NM_018813, intron 1 of 17)	1180.0	NM_018813	54451.0	Mm.356778	NM_018813	ENSMUSG00000054309	Cpsf3	-	cleavage and polyadenylation specificity factor 3	protein-coding	5.9964520638052	5.59820982427805	5.75716532934013	5.93954375427986	5.82412001928408	5.83075948743112	5.20733883336895	5.41419861935492	-0.270107632656773	0.303275862625859	0.805462835517226
Merged-chr5-135468501-4	chr5	135468401	135468601	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146001, intron 1 of 30)	intron (NM_146001, intron 1 of 30)	-73955.0	NM_148932	107939.0	Mm.28399	NM_148932	ENSMUSG00000053293	Pom121	2610027A18Rik|C80273|mKIAA0618	nuclear pore membrane protein 121	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-143650071-2	chr7	143649971	143650171	+	722.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023680)	promoter-TSS (NM_023680)	-407.0	NM_023680	79202.0	Mm.261384	NM_023680	ENSMUSG00000010751	Tnfrsf22	2810028K06Rik|C130035G06Rik|SOBa|Tnfrh2|Tnfrsf1al2|mDcTrailr2	tumor necrosis factor receptor superfamily, member 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-5243778-3	chr5	5243683	5243883	+	733.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011074, intron 3 of 14)	intron (NM_011074, intron 3 of 14)	22285.0	NM_001310448	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-123189089-3	chr8	123189068	123189268	+	893.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007876, intron 1 of 10)	intron (NM_007876, intron 1 of 10)	2933.0	NM_007876	13479.0	Mm.20388	NM_007876	ENSMUSG00000019278	Dpep1	AI327012|MBD	dipeptidase 1 (renal)	protein-coding	2.88342486717519	2.68092213376614	3.71527003628183	3.1184154810793	2.52398111254346	2.70088222232648	2.96117578922921	2.22896067360406	-0.984261849174144	0.153262166824712	0.607947810523331
Merged-chr5-115533819-4	chr5	115533709	115533909	+	945.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011223, intron 1 of 10)	intron (NM_011223, intron 1 of 10)	-25658.0	NM_007475	11837.0	Mm.5286	NM_007475	ENSMUSG00000067274	Rplp0	36B4|Arbp|L10E	ribosomal protein, large, P0	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120627146-2	chr11	120627046	120627246	+	642.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2144.0	NM_153056	209011.0	Mm.292957	NM_153056	ENSMUSG00000025138	Sirt7	-	sirtuin 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-15234778-4	chr4	15234666	15234866	+	964.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16|LTR|ERVK	-31054.0	NM_181401	100201.0	Mm.394111	NM_181401	ENSMUSG00000043252	Tmem64	9630015D15Rik|AI790744|AV300874	transmembrane protein 64	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84242274-1	chr8	84242174	84242374	+	549.0	f1_c57bl6.idr	Intergenic	B3|SINE|B2	-5232.0	NM_172503	212168.0	Mm.117094	NM_172503	ENSMUSG00000035671	Zswim4	D330002I24|E130119J17Rik	zinc finger SWIM-type containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-107403201-4	chr8	107403099	107403299	+	898.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008706)	promoter-TSS (NM_008706)	6.0	NM_008706	18104.0	Mm.252	NM_008706	ENSMUSG00000003849	Nqo1	AV001255|Dia4|Dtd|Nmo-1|Nmo1|Nmor1|Ox-1|Ox1|Qr1	NAD(P)H dehydrogenase, quinone 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-111994431-5	chr10	111994329	111994529	+	941.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028608, intron 1 of 5)	L1MA7|LINE|L1	2835.0	NM_028608	73690.0	Mm.173790	NM_028608	ENSMUSG00000056888	Glipr1	2410114O14Rik|RTVP-1|RTVP1|mRTVP-1	GLI pathogenesis-related 1 (glioma)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-150107751-3	chr5	150107643	150107843	+	783.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	89068.0	NM_001289566	140498.0	Mm.444643	NM_080468	ENSMUSG00000053368	Rxfp2	Gpr106|Great|Lgr8	relaxin/insulin-like family peptide receptor 2	protein-coding	0.959674927556036	0.52676219125228	1.6154047305744	0.503676024695021	0.834921235488607	0.529637590118402	0.516714256084942	1.64258830195005	-0.0474674873609443	0.977360568799097	0.998431161219273
Merged-chr16-3714118-2	chr16	3714018	3714218	+	594.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019453, intron 2 of 9)	intron (NM_019453, intron 2 of 9)	4006.0	NM_001161790	54483.0	Mm.143718	NM_019453	ENSMUSG00000022534	Mefv	FMF|TRIM20|pyrin	Mediterranean fever	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-113633045-2	chr5	113632945	113633145	+	950.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008153, intron 1 of 2)	intron (NM_008153, intron 1 of 2)	10558.0	NM_001359060	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-27328182-2	chr7	27328082	27328282	+	958.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113549, intron 7 of 29)	intron (NM_001113549, intron 7 of 29)	5466.0	NM_001113549	108075.0	Mm.272251	NM_175641	ENSMUSG00000040488	Ltbp4	2310046A13Rik	latent transforming growth factor beta binding protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-71015829-4	chr12	71015710	71015910	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045055)	promoter-TSS (NR_045055)	13.0	NR_045056	73204.0	Mm.363770	NR_045055	ENSMUSG00000085622	3110056K07Rik	4921536K06Rik	RIKEN cDNA 3110056K07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-120100047-4	chr2	120099941	120100141	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133838, intron 4 of 5)	intron (NM_133838, intron 4 of 5)	54534.0	NM_133838	98878.0	Mm.132226	NM_133838	ENSMUSG00000027293	Ehd4	2210022F10Rik|AI197390|AI846352|AV006278|Past2	EH-domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16931115-4	chr7	16931051	16931251	+	892.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7119.0	NM_007590	12315.0	Mm.288630	NM_007590	ENSMUSG00000019370	Calm3	CaMA|Cam3|Camc|R75142	calmodulin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-96919198-4	chr5	96919111	96919311	+	859.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2061.0	NR_131152	666266.0	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	4.58658489123997	2.55841024642335	3.81507478069603	1.63852005299483	3.47305008561053	3.45371981296504	4.26216079014502	4.69719216392438	0.664741731693114	0.550005278197412	0.958882219733107
Merged-chr8-107504538-2	chr8	107504438	107504638	+	757.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_025830, intron 6 of 23)	AT_rich|Low_complexity|Low_complexity	-46706.0	NR_029553	387158.0		NR_029553	ENSMUSG00000065439	Mir140	Mirn140|mir-140|mmu-mir-140	microRNA 140	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-86889791-4	chr10	86889679	86889879	+	991.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138673, intron 41 of 68)	Lx8|LINE|L1	110774.0	NM_175331	103466.0	Mm.200446	NM_175331	ENSMUSG00000054027	Nt5dc3	AU040402|AW540062|C630002B14Rik|TU12B1-TY	5'-nucleotidase domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101262351-2	chr11	101262251	101262451	+	647.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175638, intron 1 of 18)	intron (NM_175638, intron 1 of 18)	1784.0	NM_175638	69847.0	Mm.23656	NM_175638	ENSMUSG00000035112	Wnk4	2010002J11Rik|Pha2b|Prkwnk4	WNK lysine deficient protein kinase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-33759922-4	chr17	33759822	33760022	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008997, intron 1 of 4)	CpG	564.0	NM_008997	19326.0	Mm.387587	NM_008997	ENSMUSG00000077450	Rab11b	A730055L17Rik	RAB11B, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41291509-3	chr19	41291380	41291580	+	728.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 13 of 16)	B3A|SINE|B2	-27476.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-23887454-2	chr3	23887354	23887554	+	569.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001326288, intron 11 of 13)	RMER17D2|LTR|ERVK	896552.0	NM_001326288	635702.0	Mm.448351	NM_001326288	ENSMUSG00000102758	Naaladl2	2810043G22Rik|EG635702|Gm1021	N-acetylated alpha-linked acidic dipeptidase-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-75218130-4	chr8	75218028	75218228	+	886.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029182, intron 1 of 2)	intron (NM_029182, intron 1 of 2)	4184.0	NM_029182	75141.0	Mm.179267	NM_029182	ENSMUSG00000034472	Rasd2	4930526B11Rik|AU045414|Rhes|TEM-2|TEM2	RASD family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-6738005-1	chr10	6737905	6738105	+	748.0	f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-20588.0	NM_001302794	18390.0	Mm.438000	NM_011013	ENSMUSG00000000766	Oprm1	M-OR-1|MOP-R|MOR-1|MOR-1O|Oprm|mor|muOR	opioid receptor, mu 1	protein-coding	-1.26550836321643	-1.23538490674683	-1.24673049817958	-1.25605010478787	-1.26497736998827	-0.580802564315158	-1.24416210496749	-1.25438189966081	2.74054745292391	0.426663645876262	1
Merged-chr4-83289421-1	chr4	83289321	83289521	+	671.333313	f0_balb.idr	intron (NM_027238, intron 2 of 19)	intron (NM_027238, intron 2 of 19)	34768.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	1.58973095380117	1.58527348324368	1.25561529075764	0.871146575936733	1.60430199565105	1.59819609808893	1.26498435285884	0.873079721143084	0.0405693053664532	0.975389576701738	0.998431161219273
Merged-chr10-75744223-4	chr10	75744108	75744308	+	825.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172549, intron 10 of 36)	intron (NM_172549, intron 10 of 36)	20149.0	NM_172549	104248.0	Mm.257404	NM_172549	ENSMUSG00000020196	Cabin1	A330070M20Rik|Cain|Ppp3in	calcineurin binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-4237206-1	chr7	4237106	4237306	+	846.0	f1_balb.idr	promoter-TSS (NM_001081239)	promoter-TSS (NM_001081239)	-548.0	NM_001081239	232801.0	Mm.258061	NM_001081239	ENSMUSG00000070873	Lilra5	E030017K20|EG232801|Gm4878|Lilrc1	leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 5	protein-coding	-1.06749048699405	-1.18409811726534	-1.19455639931541	-1.20314714357788	-0.732344966823593	-1.18183176391733	-1.19218887349829	-1.20160940446224	1.4740915481595	0.659875114534777	1
Merged-chr9-44320314-4	chr9	44320149	44320349	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027909)	promoter-TSS (NM_027909)	33.0	NM_001359259	71764.0	Mm.491174	NM_027909	ENSMUSG00000032120	C2cd2l	1300006O23Rik|Tmem24	C2 calcium-dependent domain containing 2-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-80086650-2	chr17	80086550	80086750	+	853.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24382.0	NM_144802	72692.0	Mm.64579	NM_144802	ENSMUSG00000024095	Hnrnpll	2510028H02Rik|2810036L13Rik|AI256697|AI852082|Hnrpll	heterogeneous nuclear ribonucleoprotein L-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-88603902-2	chr18	88603802	88604002	+	741.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	290305.0	NM_018821	54607.0	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-103337294-3	chr12	103337188	103337388	+	955.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023049, intron 3 of 9)	intron (NM_023049, intron 3 of 9)	18713.0	NM_023049	65256.0	Mm.27159	NM_023049	ENSMUSG00000021200	Asb2	1110008E15Rik	ankyrin repeat and SOCS box-containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-69637470-2	chr2	69637370	69637570	+	647.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9785.0	NM_028284	72569.0	Mm.252136	NM_028284	ENSMUSG00000063145	Bbs5	1700049I01Rik|2700023J09Rik	Bardet-Biedl syndrome 5 (human)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-93977286-5	chr13	93977103	93977303	+	898.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	-80593.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45115798-2	chr7	45115698	45115898	+	882.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5959.0	NR_029560	387168.0		NR_029560	ENSMUSG00000065495	Mir150	Mirn150|mir-150|mmu-mir-150	microRNA 150	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-25620793-2	chr15	25620693	25620893	+	643.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1757.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-47735516-4	chr14	47735424	47735624	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347525, intron 39 of 39)	intron (NM_001347525, intron 39 of 39)	71768.0	NM_001347522	16709.0	Mm.3110	NM_008477	ENSMUSG00000021843	Ktn1	-	kinectin 1	protein-coding	4.0034791048164	3.91789498915601	4.26438051606832	3.68494370464719	3.93819991213307	3.70335695724864	4.01905778927515	2.28412615999456	-0.486283590183994	0.369212160333668	0.863136285888838
Merged-chr10-77902354-4	chr10	77902255	77902455	+	894.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145152, intron 1 of 1)	CpG	181.0	NM_145152	237387.0	Mm.133301	NM_145152	ENSMUSG00000051652	Lrrc3	1300011L04Rik|C21orf102	leucine rich repeat containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-21736459-4	chr19	21736380	21736580	+	870.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41860.0	NM_001033759	83921.0	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-79193669-3	chr12	79193567	79193767	+	812.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MURVY-int|LTR|ERV1	-1812.0	NM_021557	17252.0	Mm.291799	NM_021557	ENSMUSG00000066441	Rdh11	2610319N22Rik|AI428145|AU045252|Arsdr1|C85936|CGI-82|HCBP12|M42C60|Mdt1|Psdr1|SCALD|UBE-1c1|Ube-1c|ralR1	retinol dehydrogenase 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-93615552-3	chr16	93615410	93615610	+	830.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7673.0	NM_007620	12408.0	Mm.26940	NM_007620	ENSMUSG00000051483	Cbr1	AW261796|CR|Cbr	carbonyl reductase 1	protein-coding	-1.8418762459921	-1.8125357239735	-1.82140854000656	-1.82869693527674	-1.56059678980999	-1.8106129477253	-1.81939992894326	-1.82739231600805	1.3620893379502	0.699511506488145	1
Merged-chr7-102496853-3	chr7	102496751	102496951	+	899.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB8|LINE|L1	-2078.0	NM_146840	258837.0	Mm.377714	NM_146840	ENSMUSG00000044824	Olfr545	MOR42-1|S50	olfactory receptor 545	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-111083165-4	chr7	111083071	111083271	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001040131)	promoter-TSS (NM_001040131)	-141.0	NM_013507	13690.0	Mm.185453	NM_013507	ENSMUSG00000005610	Eif4g2	DAP-5|E130105L11Rik|Nat1|Natm1|p97	eukaryotic translation initiation factor 4, gamma 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-146676689-4	chr5	146676579	146676779	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB3|LINE|L1	-91440.0	NM_001359057	14738.0	Mm.153539	NM_008151	ENSMUSG00000041468	Gpr12	Gpcr01|Gpcr12|Gpcr20|Gpcr21	G-protein coupled receptor 12	protein-coding	5.64963732820096	4.55577653009726	5.57368043762705	5.0706373661409	5.27085136407461	5.28422972150706	4.49831153175332	4.75591152880992	-0.344180708683341	0.32613313351875	0.828154362547589
Merged-chr3-15575839-3	chr3	15575744	15575944	+	886.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001173460)	promoter-TSS (NM_001173460)	-779.0	NM_001173460	668101.0	Mm.423523	NM_001173460	ENSMUSG00000095028	Sirpb1b	-	signal-regulatory protein beta 1B	protein-coding	2.85706732895194	4.51129734525886	2.26432919098367	1.41812097678549	3.87970213803692	4.41578026278032	1.49403008248993	3.48779142562574	0.536935803545448	0.738864205506611	0.998431161219273
Merged-chr14-30608952-2	chr14	30608852	30609052	+	669.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_011103, intron 3 of 17)	MIRb|SINE|MIR	1358.0	NM_001310682	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133402176-2	chr4	133402076	133402276	+	697.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016981, intron 1 of 11)	intron (NM_016981, intron 1 of 11)	32400.0	NR_039582	100628620.0		NR_039582	ENSMUSG00000092745	Mir5122	mmu-mir-5122|mu-mir-5122	microRNA 5122	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-63557470-4	chr4	63557357	63557557	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1306.0	NM_001356355	230279.0	Mm.41523	NM_144905	ENSMUSG00000045917	Tmem268	6330416G13Rik|AW492431|bM230C2.2	transmembrane protein 268	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-142786770-2	chr5	142786670	142786870	+	623.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178242, intron 4 of 15)	intron (NM_178242, intron 4 of 15)	30617.0	NM_178242	231861.0	Mm.354649	NM_178242	ENSMUSG00000039477	Tnrc18	BC025631|EG381742|Zfp469	trinucleotide repeat containing 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134120880-4	chr6	134120780	134120980	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 2 of 8)	intron (NM_001303102, intron 2 of 8)	85180.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133598893-4	chr4	133598783	133598983	+	908.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3285.0	NM_018754	55948.0	Mm.44482	NM_018754	ENSMUSG00000047281	Sfn	Er|Mme1|Ywhas	stratifin	protein-coding	2.34906132037316	1.48802598824916	3.11265307443311	3.09576305633707	3.19967970506309	2.21656532398875	1.95206890462324	2.7067295181332	-0.0997379757671079	0.908081177368047	0.998431161219273
Merged-chr15-8442986-4	chr15	8442876	8443076	+	853.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201232, intron 1 of 45)	intron (NM_201232, intron 1 of 45)	1487.0	NM_027707	71175.0	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	NIPBL cohesin loading factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-49267854-3	chr13	49267745	49267945	+	769.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015759, intron 15 of 17)	ORR1E|LTR|ERVL-MaLR	-19139.0	NM_028340	66329.0	Mm.34308	NM_025491	ENSMUSG00000021384	Susd3	1700017I11Rik|2810440J20Rik	sushi domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-10675231-3	chr17	10675131	10675331	+	892.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027032, intron 2 of 4)	ORR1E|LTR|ERVL-MaLR	164960.0	NM_027032	69310.0	Mm.18889	NM_027032	ENSMUSG00000037196	Pacrg	1700008H23Rik	PARK2 co-regulated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-34182530-2	chr13	34182430	34182630	+	915.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001033167, exon 11 of 11)	3' UTR (NM_001033167, exon 11 of 11)	19566.0	NM_001110515	69666.0	Mm.24788	NM_001101430	ENSMUSG00000071451	Psmg4	PAC-4|mPAC4	proteasome (prosome, macropain) assembly chaperone 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-34707351-2	chr13	34707251	34707451	+	636.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32291.0	NM_138746	108161.0	Mm.41991	NM_138746	ENSMUSG00000038246	Fam50b	D0H6S2654E|X5L|XAP-5-like	family with sequence similarity 50, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-35665673-4	chr13	35665576	35665776	+	946.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009881, intron 1 of 9)	MIR3|SINE|MIR	5814.0	NM_009881	12593.0	Mm.29002	NM_009881	ENSMUSG00000059288	Cdyl	AI325931	chromodomain protein, Y chromosome-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53072753-2	chr4	53072653	53072853	+	919.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 24 of 49)	intron (NM_013454, intron 24 of 49)	60873.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-69214550-4	chr12	69214439	69214639	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011133, intron 6 of 18)	intron (NM_011133, intron 6 of 18)	13651.0	NM_011133	18974.0	Mm.9199	NM_011133	ENSMUSG00000020974	Pole2	-	polymerase (DNA directed), epsilon 2 (p59 subunit)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-21564537-2	chr15	21564437	21564637	+	699.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001008420, intron 8 of 11)	ORR1B1-int|LTR|ERVL-MaLR	453085.0	NM_001008420	215654.0	Mm.300909	NM_001008420	ENSMUSG00000040452	Cdh12	Cdhb	cadherin 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-18595568-4	chr8	18595461	18595661	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_173189, exon 1 of 14)	5' UTR (NM_173189, exon 1 of 14)	430.0	NM_173189	244329.0	Mm.235296	NM_173189	ENSMUSG00000039842	Mcph1	5430437K10Rik|BRIT1|D030046N04Rik|MCT|Tg(HLA-A2.1)1Enge	microcephaly, primary autosomal recessive 1	protein-coding	5.00597734117373	5.06780890033445	3.4246849620693	4.63780322543992	5.0412089937775	4.8525629767932	3.45466743564101	4.65958588333274	-0.0562608222060984	0.903645630219742	0.998431161219273
Merged-chr16-91523116-4	chr16	91523019	91523219	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	4425.0	NR_105786	102465190.0		NR_105786	ENSMUSG00000099308	Mir6367	Gm27467|mmu-mir-6367	microRNA 6367	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-58734770-3	chr15	58734655	58734855	+	774.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	88672.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-69127131-4	chr3	69127024	69127224	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008467)	promoter-TSS (NM_008467)	-32.0	NM_008467	16649.0	Mm.30601	NM_008467	ENSMUSG00000027782	Kpna4	1110058D08Rik|IPOA3	karyopherin (importin) alpha 4	protein-coding	6.9434238316516	7.69165609029885	7.41430270578481	7.17801021743906	7.50940041626624	7.13618968051643	7.18633034122209	7.40528089234544	-0.0052864753634145	0.97676575330396	0.998431161219273
Merged-chr18-69084307-1	chr18	69084207	69084407	+	575.0	f0_balb.idr	Intergenic	Intergenic	-62034.0	NR_105780	102465187.0		NR_105780	ENSMUSG00000098366	Mir145b	Gm27644|mmu-mir-145b	microRNA 145b	ncRNA	-0.493704461970091	-0.856012208689772	-0.861665239843445	-0.863959728756569	-0.867195858719446	-0.356270977638719	-0.861008654254567	-0.863559148558191	0.555099020488173	0.856610390725557	1
Merged-chr5-54211950-4	chr5	54211843	54212043	+	985.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-138049.0	NR_038045	330086.0	Mm.254449	NM_177871	ENSMUSG00000105912	Gm10440	D130065D13	predicted gene 10440	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-82533935-2	chr18	82533835	82534035	+	583.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025245, intron 3 of 3)	B4|SINE|B4	-20528.0	NM_001025258	17196.0	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-23866673-2	chr18	23866573	23866773	+	605.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162941, intron 5 of 7)	intron (NM_001162941, intron 5 of 7)	62703.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-104990903-3	chr12	104990793	104990993	+	803.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172500, intron 1 of 16)	intron (NM_172500, intron 1 of 16)	7784.0	NM_001042699	212073.0	Mm.212688	NM_172500	ENSMUSG00000054150	Syne3	KASH3|nesprin-3	spectrin repeat containing, nuclear envelope family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-105141313-2	chr5	105141213	105141413	+	684.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-1727.0	NM_001359080	17472.0	Mm.440525	NM_008620	ENSMUSG00000079363	Gbp4	AW228052|Mag-2|Mpa-2|Mpa2	guanylate binding protein 4	protein-coding	1.71127987558352	0.958263102132644	0.940237212568255	2.21224058461528	1.81653593777065	1.57559502002978	0.944247920988314	1.60266625129469	-0.205502037061816	0.87680146992281	0.998431161219273
Merged-chr18-60767145-7	chr18	60767040	60767240	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7456.0	NM_020600	20044.0	Mm.43778	NM_020600	ENSMUSG00000024608	Rps14	2600014J02Rik|AL023078	ribosomal protein S14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-181239791-4	chr2	181239740	181239940	+	819.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183162, intron 2 of 18)	intron (NM_183162, intron 2 of 18)	2187.0	NM_183162	229003.0	Mm.315872	NM_183162	ENSMUSG00000027580	Helz2	PDIP1|Pric285|mKIAA1769|mPDIP1	helicase with zinc finger 2, transcriptional coactivator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-97079327-4	chr7	97079211	97079411	+	814.645813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2440.0	NM_001162477	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-40173986-2	chr4	40173886	40174086	+	636.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007386, intron 4 of 20)	RMER5|LTR|ERV1	30721.0	NM_007386	11428.0	Mm.331547	NM_007386	ENSMUSG00000028405	Aco1	Aco-1|Irebp|Irp1	aconitase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-70915360-4	chr12	70915268	70915468	+	902.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	-22489.0	NM_019785	56444.0	Mm.29317	NM_019785	ENSMUSG00000021076	Actr10	Actr11|Arp11	ARP10 actin-related protein 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-45351100-4	chr14	45351005	45351205	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019637)	promoter-TSS (NM_019637)	-81.0	NM_019637	56291.0	Mm.202561	NM_019637	ENSMUSG00000053205	Styx	0610039A20Rik|hStyxb	serine/threonine/tyrosine interaction protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-68684866-1	chr16	68684766	68684966	+	777.0	f1_c57bl6.idr	Intergenic	Intergenic	-1063958.0	NM_178721	239857.0	Mm.394300	NM_178721	ENSMUSG00000064115	Cadm2	2900078E11Rik|9330131D06|A830029E02Rik|Igdf4d|Igsf4d|NECL3|SynCAM 2|SynCAM2	cell adhesion molecule 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-147904858-4	chr4	147904715	147904915	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285922)	promoter-TSS (NM_001285922)	94.0	NM_001285922	170731.0	Mm.154312	NM_133201	ENSMUSG00000029020	Mfn2	D630023P19Rik|Fzo	mitofusin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-76200919-1	chr18	76200819	76201019	+	678.0	f1_c57bl6.idr	Intergenic	Intergenic	30367.0	NR_105776	102465184.0		NR_105776	ENSMUSG00000098276	Mir6358	Gm27830|mmu-mir-6358	microRNA 6358	ncRNA	1.9708466613154	1.80605260856962	1.28806525955189	1.80699976228391	1.62403639896025	1.81963274950429	1.07993238965333	1.57833431048759	-0.624293557717441	0.578181235389604	0.965985075107763
Merged-chr8-112011378-4	chr8	112011287	112011487	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001130868)	promoter-TSS (NM_001130868)	28.0	NM_020584	57321.0	Mm.213064	NM_020584	ENSMUSG00000033430	Terf2ip	Rap1	telomeric repeat binding factor 2, interacting protein	protein-coding	4.50507753898747	4.67448906099139	5.2330311825489	4.59856627943484	4.49900284954895	4.85547922001949	4.9228481117115	4.82651723451325	-0.000522846240148633	0.998813284177754	0.999479715059607
Merged-chr2-163918667-2	chr2	163918567	163918767	+	980.3333130000001	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183023)	promoter-TSS (NM_183023)	16.0	NM_183023	241770.0	Mm.330760	NM_183023	ENSMUSG00000035226	Rims4	6530406L02|Rim4	regulating synaptic membrane exocytosis 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-16130879-4	chr19	16130795	16130995	+	738.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1936.0	NM_008139	14682.0	Mm.439701	NM_008139	ENSMUSG00000024639	Gnaq	1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI	guanine nucleotide binding protein, alpha q polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129067374-2	chr4	129067274	129067474	+	545.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029219, intron 1 of 8)	intron (NM_029219, intron 1 of 8)	9103.0	NM_029219	75234.0	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81392402-2	chr10	81392302	81392502	+	662.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001099917)	promoter-TSS (NM_001099917)	-662.0	NM_001099917	72273.0	Mm.253147	NM_001099917	ENSMUSG00000078439	Smim24	2210404O07Rik	small integral membrane protein 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-96541032-3	chr10	96540948	96541148	+	653.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger6a|DNA|TcMar-Tigger	-75953.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-158034159-2	chr3	158034059	158034259	+	680.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001093752, intron 1 of 12)	intron (NM_001093752, intron 1 of 12)	-2387.0	NM_001093753	69207.0	Mm.223946	NM_026989	ENSMUSG00000055436	Srsf11	0610009J05Rik|2610019N13Rik|BF642805|Sfrs11	serine/arginine-rich splicing factor 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-45697597-4	chr11	45697511	45697711	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-110472.0	NR_045876	100009664.0	Mm.415439	NR_045876		F630206G17Rik	-	RIKEN cDNA F630206G17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-4446115-4	chr2	4445997	4446197	+	819.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 2 of 23)	intron (NM_001177843, intron 2 of 23)	45121.0	NM_001177843	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-11852816-1	chr19	11852716	11852916	+	548.0	f1_balb.idr	Intergenic	RLTR53_Mm|LTR|ERVK	3135.0	NM_001011524	258227.0	Mm.377385	NM_001011524	ENSMUSG00000060556	Olfr1418	MOR266-5	olfactory receptor 1418	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-119088616-1	chr9	119088516	119088716	+	1000.0	f0_c57.idr	promoter-TSS (NM_001293648)	promoter-TSS (NM_001293648)	-355.0	NM_001293648	18799.0	Mm.23963	NM_019676	ENSMUSG00000010660	Plcd1	AW212592|C79986	phospholipase C, delta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-45296731-3	chr9	45296628	45296828	+	880.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22372.0	NM_001013373	214531.0	Mm.394987	NM_001013373	ENSMUSG00000037129	Tmprss13	BC010843|Tpmrss13	transmembrane protease, serine 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117061709-4	chr8	117061618	117061818	+	912.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029686, intron 9 of 42)	intron (NM_029686, intron 9 of 42)	20731.0	NM_029686	76645.0	Mm.159753	NM_029686	ENSMUSG00000034416	Pkd1l2	1700126L06Rik	polycystic kidney disease 1 like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-50036836-4	chr18	50036743	50036943	+	758.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360935, intron 1 of 1)	intron (NM_001360935, intron 1 of 1)	5859.0	NM_001360935	106869.0	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	3.91668612801777	3.54186421422578	3.69415466610859	3.88083756448682	3.15784354602508	4.82135617009577	4.89802040692185	3.60661000016691	0.739613598952935	0.1592528810339	0.618391829904723
Merged-chr16-94696514-2	chr16	94696414	94696614	+	604.25	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001347731)	TTS (NM_001347731)	85095.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-76897987-4	chr11	76897875	76898075	+	956.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6570.0	NM_025655	66601.0	Mm.25138	NM_025655	ENSMUSG00000020839	Tmigd1	2010002A20Rik|Tmigd	transmembrane and immunoglobulin domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-145221672-2	chr4	145221572	145221772	+	687.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011610, intron 8 of 9)	intron (NM_011610, intron 8 of 9)	25198.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-34516980-2	chr5	34516880	34517080	+	586.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3001.0	NM_139064	231130.0	Mm.28615	NM_139064	ENSMUSG00000059866	Tnip2	1810020H16Rik|ABIN-2|AI428870	TNFAIP3 interacting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-88861752-4	chr18	88861632	88861832	+	898.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32475.0	NM_018821	54607.0	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-6748217-2	chr2	6748117	6748317	+	918.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110232, intron 3 of 15)	intron (NM_001110232, intron 3 of 15)	-26555.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98864182-1	chr11	98864082	98864282	+	627.666687	f0_balb.idr	intron (NM_197940, intron 1 of 7)	intron (NM_197940, intron 1 of 7)	584.0	NM_197940	68524.0	Mm.28661	NM_197940	ENSMUSG00000038013	Wipf2	1110014J05Rik|5730509C05Rik|AA407487|Gm1176|Wich|Wire	WAS/WASL interacting protein family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-37146582-3	chr9	37146452	37146652	+	934.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029838, intron 1 of 12)	CpG	770.0	NM_148950	208076.0	Mm.260335	NM_148950	ENSMUSG00000035934	Pknox2	D230005H23Rik|Prep2	Pbx/knotted 1 homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-76539890-4	chr16	76539794	76539994	+	900.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8901.0	NR_155449	102632730.0		NR_155449		Gm30726	-	predicted gene, 30726	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-47432079-2	chr19	47431979	47432179	+	712.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008018, intron 1 of 14)	RSINE1|SINE|B4	32332.0	NM_001164717	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-30876984-4	chr14	30876890	30877090	+	830.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028839, exon 8 of 8)	3' UTR (NM_028839, exon 8 of 8)	-2267.0	NM_181390	66175.0	Mm.220895	NM_181390	ENSMUSG00000042485	Mustn1	1110028G01Rik|Mustang	musculoskeletal, embryonic nuclear protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-54294880-4	chr18	54294784	54294984	+	895.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR53_Mm|LTR|ERVK	-127411.0	NR_040338	77433.0	Mm.159919	NR_040338		Redrum	9430076G02Rik	Redrum, erythroid developmental long intergenic non-protein coding transcript	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-34607978-4	chr6	34607877	34608077	+	982.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347100, intron 1 of 13)	intron (NM_001347100, intron 1 of 13)	9473.0	NM_001347100	109624.0	Mm.308134	NM_145575	ENSMUSG00000029761	Cald1	4833423D12Rik|AI195384|AV071549|AW536160|C920027I18Rik	caldesmon 1	protein-coding	0.467244088689292	0.220017071670068	0.66739953050773	0.740483819892353	0.202068396552526	0.841364176416393	0.215130130958973	0.209753856604926	-0.866026407069639	0.659642404528168	1
Merged-chr10-85103093-2	chr10	85102993	85103193	+	734.200012	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010214)	promoter-TSS (NM_010214)	466.0	NM_001013028	103266.0	Mm.335025	NM_001013028	ENSMUSG00000060935	Tmem263	AI597468	transmembrane protein 263	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-22335629-4	chr10	22335539	22335739	+	832.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009018, intron 6 of 6)	intron (NM_009018, intron 6 of 6)	-26255.0	NM_020030	56554.0	Mm.458004	NM_020030	ENSMUSG00000078452	Raet1d	RAE-1delta	retinoic acid early transcript delta	protein-coding	2.2705571655682	1.95246642275128	2.750858934326	3.23724299523908	3.41543645784383	3.10354894505688	3.09891686657997	3.63459637746875	1.19812228021041	0.079050596898174	0.427632315906906
Merged-chr17-45767175-4	chr17	45767095	45767295	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152153, intron 2 of 4)	intron (NR_152153, intron 2 of 4)	32689.0	NR_152153	433111.0	Mm.213441	NR_152153	ENSMUSG00000097727	F630040K05Rik	-	RIKEN cDNA F630040K05 gene	ncRNA	1.34070923808173	0.904623869071568	0.886237903227926	1.55048793375665	1.68522984570902	0.908698754572396	2.20088739392399	1.78336280572091	1.75954602031447	0.182281389308416	0.656234879652642
Merged-chr11-20847732-4	chr11	20847643	20847843	+	910.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16635.0	NM_173752	216551.0	Mm.76694	NM_173752	ENSMUSG00000042363	Lgalsl	1110067D22Rik|A530071M23|Grpa|Hspc159|Lgalsla	lectin, galactoside binding-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-130950669-2	chr2	130950569	130950769	+	870.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009730, intron 6 of 28)	intron (NM_009730, intron 6 of 28)	44174.0	NM_009730	11990.0	Mm.119936	NM_009730	ENSMUSG00000027312	Atrn	AW558010|Mgca|mg	attractin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41321376-4	chr19	41321279	41321479	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 8 of 16)	intron (NM_031376, intron 8 of 16)	-57375.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	5.56395849860382	5.22062305232377	4.86615468179606	4.6053504313168	5.67539925648429	5.29112583918351	4.90104103063771	4.88455995109152	0.136032577633038	0.690159209521281	0.996533206832645
Merged-chr8-84202646-4	chr8	84202512	84202712	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5906.0	NR_029740	387216.0		NR_029740	ENSMUSG00000065611	Mir23a	Mirn23a|mir-23a|mmu-mir-23a	microRNA 23a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-98933964-4	chr15	98933870	98934070	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011654, intron 1 of 3)	CpG	420.0	NM_011654	22143.0	Mm.392113	NM_011654	ENSMUSG00000023004	Tuba1b	Tuba2	tubulin, alpha 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-94695974-2	chr16	94695874	94696074	+	703.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001347731)	TTS (NM_001347731)	84555.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133498612-4	chr4	133498508	133498708	+	819.116699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081156)	promoter-TSS (NM_001081156)	-58.0	NM_001081156	69539.0	Mm.151594	NM_001081156	ENSMUSG00000056596	Trnp1	2300002D11Rik|Trnp	TMF1-regulated nuclear protein 1	protein-coding	3.50392439430412	3.77171963773674	3.30460807328067	3.75194645081626	3.46605439777406	4.39421447737274	3.11430260626738	2.89282446758531	0.00721081068168387	0.989879637805463	0.998431161219273
Merged-chr10-7473684-4	chr10	7473608	7473808	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029975)	promoter-TSS (NM_029975)	-231.0	NM_029975	77777.0	Mm.442442	NM_029975	ENSMUSG00000079685	Ulbp1	A430108B07Rik|MULT1	UL16 binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-128425641-2	chr6	128425541	128425741	+	947.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133927)	promoter-TSS (NM_133927)	-731.0	NM_133927	101142.0	Mm.31345	NM_133927	ENSMUSG00000001518	Itfg2	2700050P07Rik|AI646725	integrin alpha FG-GAP repeat containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-90072744-1	chr7	90072644	90072844	+	618.0	f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	43585.0	NR_110364	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	-1.02984829257602	-1.26598729172987	-1.27598232616595	-0.988925435152524	-1.29328978397535	-1.26382132607229	-1.27371966945454	-1.28272291979146	-2.24097144207091	0.505905030189596	1
Merged-chr10-83648746-4	chr10	83648596	83648796	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145220)	promoter-TSS (NM_145220)	-32.0	NM_145220	216190.0	Mm.282985	NM_145220	ENSMUSG00000020263	Appl2	Dip3b	adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-43448244-1	chr16	43448144	43448344	+	810.333313	f0_balb.idr	intron (NM_181058, intron 2 of 6)	ORR1E|LTR|ERVL-MaLR	-28048.0	NR_046026	626693.0	Mm.447083	NR_046026	ENSMUSG00000085499	Gm15713	-	predicted gene 15713	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-95790848-4	chr15	95790742	95790942	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253813)	promoter-TSS (NM_001253813)	-1.0	NM_175344	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-73459371-3	chr2	73459265	73459465	+	845.577759	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	-5476.0	NM_001289722	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41974261-4	chr19	41974173	41974373	+	969.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028152, intron 1 of 30)	intron (NM_028152, intron 1 of 30)	6863.0	NM_028152	72199.0	Mm.218940	NM_028152	ENSMUSG00000025159	Mms19	2410001K24Rik|2610042O15Rik|AI316855|C79368|C86341|Mms19l	MMS19 (MET18 S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-70643771-4	chr18	70643696	70643896	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	75504.0	NM_010773	17191.0	Mm.322	NM_010773	ENSMUSG00000024513	Mbd2	MBD2a	methyl-CpG binding domain protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-23288128-2	chr16	23288028	23288228	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252505, intron 2 of 7)	intron (NM_001252505, intron 2 of 7)	-2342.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-93968416-4	chr11	93968334	93968534	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008704)	promoter-TSS (NM_008704)	87.0	NM_008704	18102.0	Mm.439702	NM_008704	ENSMUSG00000037601	Nme1	AL024257|NDPK-A|NM23-M1|NM23A	NME/NM23 nucleoside diphosphate kinase 1	protein-coding	6.09784973465131	4.46947034440514	5.06754682580921	5.44517852095854	6.30238615125262	5.22198515232885	4.89493659835421	6.12853788188968	0.407093598030139	0.288243267383335	0.793815200967874
Merged-chr7-19945415-2	chr7	19945315	19945515	+	554.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027308, intron 1 of 4)	ORR1E|LTR|ERVL-MaLR	5328.0	NM_027308	70080.0	Mm.98583	NM_027308	ENSMUSG00000040498	Igsf23	2210010C17Rik	immunoglobulin superfamily, member 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-62449253-2	chr10	62449153	62449353	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027926)	promoter-TSS (NR_027926)	93.0	NR_027926	74706.0	Mm.402550	NR_027926	ENSMUSG00000097129	4930507D05Rik	-	RIKEN cDNA 4930507D05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-42050623-2	chr13	42050523	42050723	+	594.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1398.0	NM_007772	110521.0	Mm.4808	NM_007772	ENSMUSG00000021366	Hivep1	Cryabp1	human immunodeficiency virus type I enhancer binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-118263983-4	chr2	118263887	118264087	+	816.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7021.0	NM_027759	71313.0	Mm.85046	NM_027759	ENSMUSG00000027344	Fsip1	1700012M13Rik|4933432K11Rik	fibrous sheath-interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-39241160-4	chr18	39241054	39241254	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361073, intron 14 of 21)	intron (NM_001361073, intron 14 of 21)	246091.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133673220-4	chr4	133673112	133673312	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145956)	promoter-TSS (NM_001145956)	-46.0	NM_001356466	230801.0	Mm.217004	NM_178698	ENSMUSG00000043257	Pigv	B330013B03|D430024F16Rik	phosphatidylinositol glycan anchor biosynthesis, class V	protein-coding	4.31475533781679	1.96855332838377	4.46748810128757	3.97179843846438	4.69850570791931	4.0418637910909	4.63445359338148	4.27447759429293	0.621931007435414	0.250249242535158	0.748509191602971
Merged-chr7-4273989-4	chr7	4273867	4274067	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011093)	promoter-TSS (NM_011093)	-176.0	NM_011093	18729.0	Mm.326531	NM_008848		Pira6	12M1|Pira10|p91B	paired-Ig-like receptor A6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-86583729-2	chr11	86583629	86583829	+	833.166687	f1_balb.idr|f1_c57bl6.idr	TTS (NR_029738)	TTS (NR_029738)	429.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-64072137-4	chr9	64072032	64072232	+	949.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8629.0	NR_040743	76814.0	Mm.243771	NR_040743		Scarletltr	2600006L11Rik	Scarletltr, erythroid developmental long intergenic non-protein coding transcript	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-34418559-2	chr2	34418459	34418659	+	914.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290626, intron 1 of 10)	L1MB7|LINE|L1	11708.0	NM_001290626	227743.0	Mm.270866	NM_177345	ENSMUSG00000038696	Mapkap1	AI591529|D230039K05Rik|Sin1	mitogen-activated protein kinase associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30336588-4	chr7	30336497	30336697	+	921.508301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14222.0	NM_001033140	68332.0	Mm.6844	NM_001033140	ENSMUSG00000074211	Sdhaf1	0610010E21Rik|AI430885|AW490662|Lyrm8	succinate dehydrogenase complex assembly factor 1	protein-coding	4.27200110361688	5.74300870120968	3.44768029938249	4.67681589381679	4.88439577788221	5.39288245741194	3.96175594495996	5.43250259603884	0.29876405598162	0.533729234310898	0.952266905421651
Merged-chr2-34406859-4	chr2	34406782	34406982	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177345)	promoter-TSS (NM_177345)	31.0	NM_001290626	227743.0	Mm.270866	NM_177345	ENSMUSG00000038696	Mapkap1	AI591529|D230039K05Rik|Sin1	mitogen-activated protein kinase associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83327880-2	chr6	83327780	83327980	+	792.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145571, intron 1 of 5)	B1_Mur2|SINE|Alu	1841.0	NM_145571	232157.0	Mm.29500	NM_145571	ENSMUSG00000043131	Mob1a	4022402H07Rik|MOB1|MOB4B|Mobk1b|Mobkl1b	MOB kinase activator 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-132383049-2	chr7	132382949	132383149	+	708.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-65821.0	NM_029935	77590.0	Mm.213582	NM_029935	ENSMUSG00000030930	Chst15	4631426J05Rik|BRAG|GalNAc4S-6ST|GalNAcS-6ST|MAd5|mKIAA0598	carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-125474327-4	chr1	125474221	125474421	+	963.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-38594.0	NM_001205385	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-70394522-4	chr16	70394433	70394633	+	998.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028803, intron 2 of 15)	intron (NM_028803, intron 2 of 15)	80584.0	NM_028803	74185.0	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	6.73561204217993	6.93169046324198	6.90558157247741	6.12740239249787	4.65282587875903	4.95966232191417	3.66511414944966	4.50076105285424	-2.44981174288293	2.28315725389645e-16	1.95666576658925e-13
Merged-chr8-105341497-2	chr8	105341397	105341597	+	809.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177699, intron 1 of 21)	intron (NM_177699, intron 1 of 21)	6473.0	NM_177699	234686.0	Mm.87724	NM_177699	ENSMUSG00000014778	Fhod1	BC017144|FHOS|FHOS1	formin homology 2 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-59997809-2	chr10	59997709	59997909	+	705.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_025514, intron 1 of 3)	intron (NM_025514, intron 1 of 3)	-4996.0	NM_026937	69090.0	Mm.155839	NM_026937	ENSMUSG00000044475	Ascc1	1810015P09Rik|AI550520|ASC1p50|CGI-18	activating signal cointegrator 1 complex subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-43659293-3	chr7	43659160	43659360	+	812.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_031181, exon 2 of 7)	exon (NM_031181, exon 2 of 7)	901.0	NM_031181	83382.0	Mm.157702	NM_031181	ENSMUSG00000030474	Siglece	Cd170|Siglec12|Siglec5|Siglec9|Siglecl1|mSiglec-E	sialic acid binding Ig-like lectin E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-11928306-3	chr19	11928215	11928415	+	705.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172635, intron 9 of 18)	B2_Mm2|SINE|B2	4587.0	NR_105960	102465601.0		NR_105960	ENSMUSG00000104979	Mir6994	mmu-mir-6994	microRNA 6994	ncRNA	1.97865976247801	2.19899851116499	2.25383961265641	2.39875153153053	1.99337628798309	2.21418140004499	2.27052645301412	2.31260761622327	-0.0351945375148908	0.966705463746365	0.998431161219273
Merged-chr7-46958966-2	chr7	46958866	46959066	+	545.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001040695)	promoter-TSS (NM_001040695)	-448.0	NM_001040695	54122.0	Mm.1999	NM_016855	ENSMUSG00000043262	Uevld	8430408E05Rik|Attp	UEV and lactate/malate dehyrogenase domains	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101115743-4	chr11	101115618	101115818	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155071, intron 1 of 6)	intron (NR_155071, intron 1 of 6)	4123.0	NM_026501	67998.0	Mm.33881	NM_026501	ENSMUSG00000017802	Retreg3	1300010M03Rik|4933404C01Rik|AI551748|Fam134c	reticulophagy regulator family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-170347468-4	chr2	170347394	170347594	+	877.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001164369, exon 12 of 12)	3' UTR (NM_001164369, exon 12 of 12)	-8867.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-97530760-2	chr13	97530660	97530860	+	915.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29240.0	NR_046157	328314.0	Mm.138047	NR_046157	ENSMUSG00000110235	Gm5086	B230311A21|EG328314	predicted gene 5086	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4055009-2	chr19	4054909	4055109	+	765.875	f1_balb.idr|f1_c57bl6.idr	Intergenic	IMPB_01|Satellite|Satellite	4438.0	NM_144869	225884.0	Mm.440201	NM_144869	ENSMUSG00000058216	Gstp3	-	glutathione S-transferase pi 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-5241896-3	chr15	5241784	5241984	+	958.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001136079, intron 2 of 2)	intron (NM_001136079, intron 2 of 2)	2303.0	NM_001136079	19219.0	Mm.18509	NM_008965	ENSMUSG00000039942	Ptger4	EP4|Ptgerep4	prostaglandin E receptor 4 (subtype EP4)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-67444817-6	chr7	67444631	67444831	+	966.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-71873.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	1.2597693267872	1.42920384985739	1.04260908053155	1.92999075761636	1.13625365730533	0.843270548525265	0.827548830612651	1.86310892460611	-0.70748791395957	0.596935557687261	0.971869841839844
Merged-chr15-85076506-4	chr15	85076401	85076601	+	827.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080470, intron 19 of 24)	RLTR42-int|LTR|ERVK	33759.0	NM_001356616	73225.0	Mm.247535	NM_133750	ENSMUSG00000022434	Fam118a	-	family with sequence similarity 118, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27702563-3	chr2	27702470	27702670	+	777.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011305, intron 1 of 9)	intron (NM_011305, intron 1 of 9)	-6722.0	NM_001290481	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-78265193-4	chr16	78265086	78265286	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9732.0	NR_045698	100503619.0	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-8592841-2	chr17	8592741	8592941	+	931.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290707, intron 1 of 22)	intron (NM_001290707, intron 1 of 22)	66040.0	NM_001290707	23984.0	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-51836472-2	chr13	51836372	51836572	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-10203.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-50027433-2	chr17	50027333	50027533	+	573.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_181397, intron 7 of 9)	RMER17D|LTR|ERVK	163064.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-57293557-2	chr1	57293458	57293658	+	842.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-78562.0	NR_037990	407809.0	Mm.134505	NR_037990	ENSMUSG00000101429	BC055402	-	cDNA sequence BC055402	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27751491-2	chr2	27751391	27751591	+	803.983337	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290481, intron 5 of 9)	intron (NM_001290481, intron 5 of 9)	40908.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-139192721-4	chr4	139192625	139192825	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009798)	promoter-TSS (NM_009798)	-174.0	NM_009798	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-130839568-4	chr7	130839463	130839663	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26161.0	NM_133942	101476.0	Mm.323554	NM_133942	ENSMUSG00000040268	Plekha1	AA960558|C920009D07Rik|TAPP1	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-116072740-3	chr3	116072631	116072831	+	700.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56957.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	1.86119918297188	1.96269399042673	1.89627019129572	1.96195866056265	1.87662863826883	1.45392471958679	2.50068196686386	1.16388156234592	-0.131901193912588	0.900539099392346	0.998431161219273
Merged-chr14-26579520-4	chr14	26579435	26579635	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001134465)	promoter-TSS (NM_001134465)	-15.0	NM_001134465	211922.0	Mm.260512	NM_145969	ENSMUSG00000040818	Dennd6a	Fam116a	DENN/MADD domain containing 6A	protein-coding	4.99369878664241	5.06450508163986	4.95188905537131	4.47765082226195	5.02941527372768	5.09744783892848	4.98630000209364	4.54861919351646	0.0495357292543375	0.881734206690288	0.998431161219273
Merged-chr11-3519007-2	chr11	3518907	3519107	+	823.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001284427, intron 19 of 19)	intron (NM_001284427, intron 19 of 19)	4323.0	NM_053267	114679.0	Mm.34046	NM_053267	ENSMUSG00000075702	Selenom	1500040L08Rik|A230103K18|Selm|Sepm	selenoprotein M	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-132475258-3	chr7	132475195	132475395	+	772.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	101103.0	NM_016978	18242.0	Mm.13694	NM_016978	ENSMUSG00000030934	Oat	AI194874|rhg	ornithine aminotransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-10766926-2	chr17	10766826	10767026	+	710.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027032, intron 2 of 4)	intron (NM_027032, intron 2 of 4)	73265.0	NM_027032	69310.0	Mm.18889	NM_027032	ENSMUSG00000037196	Pacrg	1700008H23Rik	PARK2 co-regulated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115011765-6	chr5	115011663	115011863	+	897.93335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029012, intron 1 of 10)	CpG	239.0	NM_029012	74585.0	Mm.355894	NM_029012	ENSMUSG00000029550	Sppl3	4833416I09Rik|Psl4|Usmg3	signal peptide peptidase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-32940880-4	chr5	32940785	32940985	+	963.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025426, intron 28 of 42)	intron (NM_001025426, intron 28 of 42)	77164.0	NM_001170567	277854.0	Mm.101524	NM_177786	ENSMUSG00000037426	Depdc5	AV016528	DEP domain containing 5	protein-coding	3.45103977821	3.61727970461553	2.73910808142696	4.8453013768165	4.25068633790063	3.54331788607858	3.69844709968249	4.63837066622335	0.282767875922621	0.620234891213809	0.978763712119577
Merged-chr11-115367742-3	chr11	115367646	115367846	+	808.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346774)	promoter-TSS (NM_001346774)	10.0	NM_001346774	217310.0	Mm.205707	NM_175454	ENSMUSG00000034586	Hid1	C630004H02Rik	HID1 domain containing	protein-coding	0.301520582082011	1.31959336529073	0.826306486097923	0.313101438897435	0.734633407738002	0.731261719915602	0.321955484377596	0.31431012185341	-1.20950002219615	0.512067953769091	1
Merged-chr8-79028739-3	chr8	79028661	79028861	+	741.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001294279, intron 1 of 14)	intron (NM_001294279, intron 1 of 14)	324.0	NM_178267	622675.0	Mm.48724	NM_178267	ENSMUSG00000071064	Zfp827	2810449M09Rik|D630040G17Rik|Znf827	zinc finger protein 827	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-17653544-2	chr10	17653444	17653644	+	587.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-69684.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101831805-2	chr7	101831705	101831905	+	848.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010567, intron 9 of 28)	intron (NM_010567, intron 9 of 28)	6019.0	NM_001122739	16332.0	Mm.476000	NM_010567	ENSMUSG00000032737	Inppl1	51C|SHIP2	inositol polyphosphate phosphatase-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-54696814-2	chr13	54696714	54696914	+	599.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-2854.0	NR_027396	105239.0	Mm.25366	NM_134064	ENSMUSG00000034928	Rnf44	AI854545|mKIAA1100	ring finger protein 44	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105282886-2	chr8	105282786	105282986	+	574.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_030152)	TTS (NM_030152)	6439.0	NM_030152	78688.0	Mm.475715	NM_030152	ENSMUSG00000014776	Nol3	ARC|B430311C09Rik|MYC|NOP|Nop30	nucleolar protein 3 (apoptosis repressor with CARD domain)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-18087822-4	chr2	18087725	18087925	+	938.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010804, intron 3 of 22)	RMER16_Mm|LTR|ERVK	23240.0	NM_001252561	17354.0	Mm.209175	NM_010804	ENSMUSG00000026743	Mllt10	Af10|B130021D15Rik|D630001B22Rik|mKIAA4140	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-20545741-1	chr8	20545641	20545841	+	541.0	f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-69186.0	NM_001270553	100861668.0	Mm.491087	NM_001270553	ENSMUSG00000095294	Gm21119	-	predicted gene, 21119	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-35186746-2	chr7	35186646	35186846	+	617.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_017394, intron 1 of 10)	intron (NM_017394, intron 1 of 10)	361.0	NM_017394	53896.0	Mm.35567	NM_017394	ENSMUSG00000030495	Slc7a10	AL024237|Asc-1|D7Bwg0847e	solute carrier family 7 (cationic amino acid transporter, y+ system), member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-7455381-3	chr4	7455258	7455458	+	874.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-105330.0	NR_040645	71510.0	Mm.410775	NR_040645	ENSMUSG00000086070	8430436N08Rik	-	RIKEN cDNA 8430436N08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-69362591-2	chr12	69362491	69362691	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5415.0	NM_025441	66244.0	Mm.46705	NM_025441	ENSMUSG00000020982	Nemf	1500011I12Rik|4933405E14Rik|Sdccag1	nuclear export mediator factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-29369045-1	chr19	29368945	29369145	+	774.833313	f0_balb.idr	intron (NM_021893, intron 1 of 6)	intron (NM_021893, intron 1 of 6)	1607.0	NM_021893	60533.0	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-43460684-1	chr17	43460584	43460784	+	572.0	f0_c57.idr	Intergenic	Intergenic	42089.0	NM_008585	17287.0	Mm.5346	NM_008585	ENSMUSG00000023914	Mep1a	AI098089|AW107200|Mep-1|Mep-1a|Mep1	meprin 1 alpha	protein-coding	2.02966745782812	1.98848736012704	1.75483889660122	2.74895881485397	2.41816646963854	1.82312433255213	1.5650267898158	2.54111755455877	-0.0879375559820112	0.924978663788184	0.998431161219273
Merged-chr11-103325366-2	chr11	103325266	103325466	+	946.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19336.0	NM_133715	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-61452706-2	chr14	61452606	61452806	+	653.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12759.0	NM_008466	16648.0	Mm.25548	NM_008466	ENSMUSG00000021929	Kpna3	IPOA4	karyopherin (importin) alpha 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-10533149-4	chr18	10533081	10533281	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083628, intron 19 of 32)	intron (NM_001083628, intron 19 of 32)	77171.0	NM_001081222	77805.0	Mm.210996	NM_144542	ENSMUSG00000024293	Esco1	A930014I12Rik	establishment of sister chromatid cohesion N-acetyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-31866769-1	chr5	31866669	31866869	+	559.0	f1_c57bl6.idr	intron (NM_144541, intron 6 of 11)	intron (NM_144541, intron 6 of 11)	168719.0	NM_144541	107976.0	Mm.482126	NM_144541	ENSMUSG00000052139	Babam2	6030405P19Rik|AI429776|B830038C02Rik|Bre	BRISC and BRCA1 A complex member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83107775-4	chr6	83107675	83107875	+	835.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081266, exon 8 of 9)	exon (NM_001081266, exon 8 of 9)	-1333.0	NM_026744	68499.0	Mm.333183	NM_026744	ENSMUSG00000030037	Mrpl53	1110007K17Rik	mitochondrial ribosomal protein L53	protein-coding	-1.35953612152312	-1.32466147805743	-1.48871671803687	-1.49676950319435	-1.50905536753953	-1.32253704552342	-1.48649744853267	-1.4953280585013	-0.636509830385826	0.841977096763708	1
Merged-chr7-68144483-3	chr7	68144372	68144572	+	758.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010513, intron 2 of 20)	intron (NM_010513, intron 2 of 20)	119761.0	NM_030101	78444.0	Mm.425468	NM_030101	ENSMUSG00000030553	Pgpep1l	C330024D12Rik	pyroglutamyl-peptidase I-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-16815314-2	chr19	16815214	16815414	+	676.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34381.0	NM_173028	271564.0	Mm.211963	NM_173028	ENSMUSG00000046230	Vps13a	4930425F11|4930516E05Rik|4930543C13Rik|9930023P20|Chac|Chorein|D330038K10Rik|mKIAA0986	vacuolar protein sorting 13A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-26981860-4	chr8	26981758	26981958	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001101502)	TTS (NM_001101502)	4522.0	NM_001110508	353310.0	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-175880668-4	chr1	175880562	175880762	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_012012)	promoter-TSS (NM_012012)	-116.0	NM_012012	26909.0	Mm.283046	NM_012012	ENSMUSG00000039748	Exo1	5730442G03Rik|Msa	exonuclease 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-193703181-2	chr1	193703119	193703319	+	647.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-195689.0	NR_029592	387201.0		NR_029592	ENSMUSG00000065533	Mir205	Mirn205|mir-205|mmu-mir-205	microRNA 205	ncRNA	0.260832692347848	-0.179102324449165	-0.183469102636039	-0.186829045865569	-0.191563626151949	0.304421444131918	-0.182507132013062	0.227521728848544	0.989659297486273	0.681030713026515	1
Merged-chr16-91463624-3	chr16	91463527	91463727	+	779.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-1477.0	NR_077219	100503120.0	Mm.387130	NR_077219	ENSMUSG00000084866	A930006K02Rik	-	RIKEN cDNA A930006K02 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-85080196-2	chr8	85080096	85080296	+	985.833374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001001493)	promoter-TSS (NM_001001493)	550.0	NM_026399	67836.0	Mm.334680	NM_026399	ENSMUSG00000005150	Wdr83	1500041N16Rik|Morg1	WD repeat domain containing 83	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-94367586-2	chr8	94367486	94367686	+	681.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-18843.0	NM_001357205	64209.0	Mm.29151	NM_022331	ENSMUSG00000031770	Herpud1	Herp|Mifl|SUP	homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6974662-8	chr19	6974516	6974716	+	991.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008889)	promoter-TSS (NM_008889)	-432.0	NM_008889	18938.0	Mm.140	NM_008889	ENSMUSG00000056612	Ppp1r14b	AOM172|PHI-1|PLCB3N|Png	protein phosphatase 1, regulatory (inhibitor) subunit 14B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-80690905-2	chr18	80690750	80690950	+	710.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_198429, intron 2 of 9)	intron (NM_198429, intron 2 of 9)	17323.0	NM_001164111	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	-2.18243820993087	-2.15538464093652	-2.16356586349869	-2.17028616330028	-2.18053909940952	-2.15361173587851	-2.16171381403791	-2.0403552525549	0.759018020146679	0.829933115115583	1
Merged-chr5-151086566-4	chr5	151086455	151086655	+	770.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153382, intron 3 of 13)	intron (NR_153382, intron 3 of 13)	103638.0	NM_001163493	243362.0	Mm.209272	NM_146258	ENSMUSG00000016128	Stard13	DLC2|GT650	StAR-related lipid transfer (START) domain containing 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-125748054-2	chr10	125747954	125748154	+	601.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-218165.0	NM_177152	320398.0	Mm.275586	NM_177152	ENSMUSG00000020105	Lrig3	9030421L11Rik|9130004I02Rik|9430095K15Rik|mKIAA3016	leucine-rich repeats and immunoglobulin-like domains 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-64378862-3	chr13	64378759	64378959	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8339.0	NM_009984	13039.0	Mm.930	NM_009984	ENSMUSG00000021477	Ctsl	1190035F06Rik|CatL|Ctsl1|MEP|fs|nkt	cathepsin L	protein-coding	2.6924111115428	2.7586770685262	2.95333603094251	3.20643671903006	3.47275790423809	4.22175399371589	4.51840062252758	4.61320503578816	1.9993967841985	0.000214136814662446	0.00569696321114631
Merged-chr8-41033727-1	chr8	41033627	41033827	+	769.0	f1_c57bl6.idr	intron (NM_001005863, intron 5 of 13)	Lx4A|LINE|L1	8204.0	NM_001005865	102103.0	Mm.149438	NM_001005863	ENSMUSG00000045636	Mtus1	AI481402|ATBP135|Atip1|B430010I23Rik|B430305I03Rik|C85752|Cctsg1-440|MD44|MTSG1|mKIAA1288	mitochondrial tumor suppressor 1	protein-coding	0.822910565629384	0.52240435018115	0.509413217066112	1.27071577005026	1.08721025647811	0.5252946142028	0.512302861758819	1.84804788591808	1.21907256826995	0.462199537699009	0.921194606787634
Merged-chr18-35563299-3	chr18	35563185	35563385	+	718.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010771, intron 1 of 14)	intron (NM_010771, intron 1 of 14)	1127.0	NM_010771	17184.0	Mm.215034	NM_010771	ENSMUSG00000037236	Matr3	1110061A14Rik|2810017I02Rik|AI841759|AW555618|D030046F20Rik|mKIAA0723	matrin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-70707154-4	chr17	70707057	70707257	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360665, intron 9 of 14)	intron (NM_001360665, intron 9 of 14)	139620.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	5.04149089877821	4.46663147292243	5.6954236649044	4.41886407207418	4.50185117746526	4.15922770145121	4.41248155474928	3.81498723803643	-0.945385151663677	0.0226592002232234	0.195346907835381
Merged-chr13-74317337-4	chr13	74317240	74317440	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011051)	promoter-TSS (NM_011051)	-14.0	NM_001359996	18570.0	Mm.24254	NM_011051	ENSMUSG00000021576	Pdcd6	AV299538|Alg2|MA-3|PS2|alg-2	programmed cell death 6	protein-coding	4.79668335200104	4.4773712495393	4.15701173008618	4.04255272610091	4.19666673502077	3.4404520945779	4.86984748281208	4.81116286516742	0.0527187564548143	0.905222389019612	0.998431161219273
Merged-chr9-44571133-4	chr9	44571034	44571234	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33758.0	NM_001110826	13209.0	Mm.267061	NM_007841	ENSMUSG00000032097	Ddx6	1110001P04Rik|C430015D01Rik|E230023J21Rik|HLR2|mRCK/P54|p54|rck	DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	protein-coding	3.42147744805721	3.17113142638673	2.8358636422086	3.32687589624417	3.0274000335488	3.1945170241143	2.2107960442547	3.93088511480129	0.0516452467834213	0.936861390379865	0.998431161219273
Merged-chr3-89772379-2	chr3	89772279	89772479	+	700.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_130957, intron 1 of 1)	intron (NR_130957, intron 1 of 1)	1021.0	NR_130957	74034.0	Mm.386816	NR_130957	ENSMUSG00000042579	4632404H12Rik	-	RIKEN cDNA 4632404H12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-94158526-2	chr11	94158391	94158591	+	656.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52963.0	NM_009427	22057.0	Mm.259673	NM_009427	ENSMUSG00000037573	Tob1	Tob|Trob	transducer of ErbB-2.1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106676147-1	chr11	106676047	106676247	+	558.0	f1_balb.idr	intron (NM_001305158, intron 12 of 14)	intron (NM_001305158, intron 12 of 14)	39134.0	NM_001305158	18613.0	Mm.343951	NM_008816	ENSMUSG00000020717	Pecam1	C85791|Cd31|PECAM-1|Pecam	platelet/endothelial cell adhesion molecule 1	protein-coding	0.379039191755522	0.859346302014353	0.390861067502111	0.536807406300103	0.51315915557641	0.868523154891127	1.10282940060706	0.387171807386096	1.3200207116459	0.458219060946733	1
Merged-chr16-22549460-2	chr16	22549360	22549560	+	650.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346673, intron 18 of 23)	intron (NM_001346673, intron 18 of 23)	-17276.0	NR_106170	102465887.0		NR_106170	ENSMUSG00000099071	Mir8095	Gm27566|mmu-mir-8095	microRNA 8095	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65202117-3	chr9	65202001	65202201	+	928.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12589.0	NM_177460	214424.0	Mm.31129	NM_177460	ENSMUSG00000032392	Parp16	ARTD15|BC055447|C79952|PARP-16	poly (ADP-ribose) polymerase family, member 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-147338648-2	chr4	147338548	147338748	+	712.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039209, intron 1 of 2)	ID_B1|SINE|B4	162782.0	NM_001039209	195531.0	Mm.270762	NM_001039209	ENSMUSG00000078496	Zfp982	Gm13152	zinc finger protein 982	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-57611321-4	chr19	57611208	57611408	+	956.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_181415, exon 1 of 29)	5' UTR (NM_181415, exon 1 of 29)	274.0	NM_181415	226255.0	Mm.245340	NM_181415	ENSMUSG00000054843	Atrnl1	AI504415|AW555641|Alp|Atrnl|Atrnlp	attractin like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-62684832-4	chr13	62684741	62684941	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60659.0	NM_173381	211378.0	Mm.247448	NM_173381	ENSMUSG00000072066	6720489N17Rik	9330128I06	RIKEN cDNA 6720489N17 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-118900082-3	chr2	118899992	118900192	+	849.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1523.0	NM_001045523	228536.0	Mm.330487	NM_001045523	ENSMUSG00000040007	Bahd1	AL022997|AW541238|Gm117|mKIAA0945	bromo adjacent homology domain containing 1	protein-coding	1.25500620622273	1.07256900964491	1.36927297489664	1.45288587543329	1.38279805236267	0.844399420074309	0.829221911077288	2.06870039608134	0.415560682073074	0.755068277551431	0.998431161219273
Merged-chr2-167956822-2	chr2	167956722	167956922	+	647.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011201, intron 1 of 8)	intron (NM_011201, intron 1 of 8)	24495.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-108222820-4	chr11	108222739	108222939	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011101, intron 2 of 16)	intron (NM_011101, intron 2 of 16)	121049.0	NM_011101	18750.0	Mm.222178	NM_011101	ENSMUSG00000050965	Prkca	AI875142|Pkca	protein kinase C, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-98891978-1	chr15	98891878	98892078	+	543.0	f1_c57bl6.idr	3' UTR (NM_007857, exon 3 of 3)	3' UTR (NM_007857, exon 3 of 3)	6562.0	NM_007857	13363.0	Mm.324688	NM_007857	ENSMUSG00000023000	Dhh	C78960	desert hedgehog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-120002211-4	chr9	120002108	120002308	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17466.0	NM_153287	215418.0	Mm.491094	NM_153287	ENSMUSG00000032515	Csrnp1	4931429D10Rik|Axud1|CSRNP-1|URAX1|taip-3	cysteine-serine-rich nuclear protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-123855914-2	chr9	123855814	123856014	+	711.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_011798, exon 2 of 2)	exon (NM_011798, exon 2 of 2)	-4015.0	NM_001110253	17281.0	Mm.252941	NM_148925	ENSMUSG00000025241	Fyco1	2810409M01Rik|Mem2|RUFY3|ZFYVE7	FYVE and coiled-coil domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-55252598-4	chr15	55252500	55252700	+	988.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_145470, exon 9 of 9)	3' UTR (NM_145470, exon 9 of 9)	-55150.0	NM_181277	12818.0	Mm.297859	NM_181277	ENSMUSG00000022371	Col14a1	5730412L22Rik|AW108078	collagen, type XIV, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-11128679-2	chr4	11128579	11128779	+	775.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4721.0	NR_151526	100503518.0	Mm.102270	NR_151526	ENSMUSG00000086765	Gm11827	-	predicted gene 11827	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95656424-2	chr3	95656324	95656524	+	762.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2297.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55586217-4	chr19	55586126	55586326	+	978.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360431, intron 8 of 8)	Tigger19a|DNA|TcMar-Tigger	115978.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44304967-3	chr7	44304880	44305080	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009131, exon 4 of 4)	exon (NM_009131, exon 4 of 4)	1979.0	NM_009131	20256.0	Mm.20428	NM_009131	ENSMUSG00000004473	Clec11a	AW457320|Clecsf3|Scgf	C-type lectin domain family 11, member a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-33911791-2	chr17	33911691	33911891	+	811.666626	f1_balb.idr|f1_c57bl6.idr	exon (NM_007829, exon 3 of 8)	exon (NM_007829, exon 3 of 8)	2190.0	NM_001199733	13163.0	Mm.271809	NM_007829	ENSMUSG00000002307	Daxx	-	Fas death domain-associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-73487082-4	chr2	73486977	73487177	+	894.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	-1324.0	NM_001289723	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-66235773-4	chr14	66235701	66235901	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	-21977.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-149708707-1	chr4	149708607	149708807	+	584.0	f1_balb.idr	Intergenic	Intergenic	-7078.0	NM_001029837	18707.0	Mm.229108	NM_008840	ENSMUSG00000039936	Pik3cd	2410099E07Rik|2610208K16Rik|AW545373|p110delta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding	0.868864181938506	0.994977958206265	0.580087129667846	0.57120150859781	0.558456426841167	1.0039220495113	1.54698752118918	1.39472367357139	2.00783851277517	0.2043480244625	0.69167790036705
Merged-chr8-124219311-4	chr8	124219221	124219421	+	990.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC4|LINE|L1	-12073.0	NM_139272	108148.0	Mm.33808	NM_139272	ENSMUSG00000089704	Galnt2	AI480629	polypeptide N-acetylgalactosaminyltransferase 2	protein-coding	5.26902962742491	3.88754596831658	4.69480391039981	5.14519194137914	4.8017300493261	3.60660805611661	5.27588023974796	4.34836672462268	-0.257595464309089	0.560189152289129	0.960321604678676
Merged-chr15-59030609-2	chr15	59030509	59030709	+	596.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144800, intron 3 of 14)	intron (NM_144800, intron 3 of 14)	51417.0	NM_001146180	211401.0	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-127513925-1	chr3	127513825	127514025	+	761.0	f1_c57bl6.idr	Intergenic	Intergenic	-14810.0	NM_001327938	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	0.710557255240933	0.0551120873647509	-0.151154174822059	0.285639906755337	-0.16110824324491	-0.144629374371686	-0.149978290908933	-0.154552780919054	-3.91733215403727	0.0844505625722027	1
Merged-chr4-46196253-4	chr4	46196131	46196331	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011728)	promoter-TSS (NM_011728)	80.0	NM_011728	22590.0	Mm.247036	NM_011728	ENSMUSG00000028329	Xpa	AI573865|Xpac	xeroderma pigmentosum, complementation group A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127801275-2	chr7	127801175	127801375	+	774.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001040684, intron 2 of 6)	intron (NM_001040684, intron 2 of 6)	666.0	NM_001040684	101502.0	Mm.157103	NM_133943	ENSMUSG00000042289	Hsd3b7	AI195443|BB098564	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-95991675-2	chr16	95991575	95991775	+	930.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019537)	promoter-TSS (NM_019537)	-715.0	NM_019537	56088.0	Mm.396248	NM_019537	ENSMUSG00000022913	Psmg1	AW552102|Dscr2	proteasome (prosome, macropain) assembly chaperone 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99379020-2	chr15	99378920	99379120	+	725.375	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-8538.0	NM_001310622	22379.0	Mm.29043	NM_011711	ENSMUSG00000023008	Fmnl3	2700073B04Rik|FBP11|Wbp3|mKIAA2014	formin-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-107152132-2	chr11	107152032	107152232	+	797.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5276.0	NM_001308498	105734734.0		NM_001308498		Gm11715	-	predicted gene 11715	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-25622396-4	chr15	25622283	25622483	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019472)	promoter-TSS (NM_019472)	-167.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-77356155-3	chr1	77356046	77356246	+	771.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	140622.0	NR_105770	102465180.0		NR_105770	ENSMUSG00000099141	Mir6352	Gm27481|mmu-mir-6352	microRNA 6352	ncRNA	1.05128263055384	0.785494157228821	1.51391218301617	0.763898994935735	1.05950905558426	1.34017493763788	1.62764774592264	1.24732951034569	1.09385518300374	0.426477752100771	0.902023751857747
Merged-chr8-70657913-2	chr8	70657825	70658025	+	583.75	f0_c57.idr|f1_c57bl6.idr	intron (NM_023217, intron 1 of 4)	intron (NM_023217, intron 1 of 4)	1813.0	NM_023217	66522.0	Mm.154906	NM_023217	ENSMUSG00000056204	Pgpep1	2810003H13Rik|Gm19458|PAP-I|PGP|PGP-I|PGPI|Pcp	pyroglutamyl-peptidase I	protein-coding	0.123807909331393	0.466105569670151	0.304706537259925	-0.00231539102026801	-0.00729985126045402	0.190096687389993	0.00224388758821303	0.399437519695155	-0.633477346565748	0.754490559900104	1
Merged-chr2-132253823-2	chr2	132253723	132253923	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011045)	promoter-TSS (NM_011045)	-643.0	NM_011045	18538.0	Mm.7141	NM_011045	ENSMUSG00000027342	Pcna	-	proliferating cell nuclear antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-25103835-2	chr8	25103735	25103935	+	673.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_155282, intron 1 of 1)	intron (NR_155282, intron 1 of 1)	1656.0	NR_155282	74744.0	Mm.117802	NR_155282		5830408C22Rik	2700026D01Rik	RIKEN cDNA 5830408C22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-51526332-4	chr10	51526237	51526437	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTRIS2|LTR|ERV1	35439.0	NM_013532	14728.0	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-84878049-4	chr17	84877963	84878163	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-78678.0	NM_001159497	19043.0	Mm.249695	NM_011151	ENSMUSG00000061130	Ppm1b	PP2CB	protein phosphatase 1B, magnesium dependent, beta isoform	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-47594330-4	chr6	47594203	47594403	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007971, intron 1 of 19)	CpG	727.0	NM_001146689	14056.0	Mm.246688	NM_007971	ENSMUSG00000029687	Ezh2	Enx-1|Enx1h|KMT6|mKIAA4065	enhancer of zeste 2 polycomb repressive complex 2 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-76407355-2	chr12	76407255	76407455	+	687.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_008301)	TTS (NM_008301)	2985.0	NM_008301	15512.0	Mm.296181	NM_008301	ENSMUSG00000059970	Hspa2	70kDa|HSP70.2|HSP70A2|Hsp70-2	heat shock protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45566490-2	chr7	45566390	45566590	+	700.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025330, intron 8 of 8)	PB1D7|SINE|Alu	-3663.0	NM_009737	12036.0	Mm.24210	NM_009737	ENSMUSG00000030826	Bcat2	Bcat(m)|Bcat-2|Eca40	branched chain aminotransferase 2, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4624924-4	chr16	4624762	4624962	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025571)	promoter-TSS (NM_025571)	84.0	NM_025571	66449.0	Mm.354760	NM_025571	ENSMUSG00000014301	Pam16	2010110I09Rik|AV006767|CGI-136|Magmas|Tim16|Timm16	presequence translocase-asssociated motor 16 homolog (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-52458948-3	chr15	52458845	52459045	+	555.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	163392.0	NM_172816	239436.0	Mm.208831	NM_172816	ENSMUSG00000022315	Slc30a8	C820002P14Rik|ZnT-8|ZnT8	solute carrier family 30 (zinc transporter), member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-20661859-2	chr14	20661759	20661959	+	800.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_001310431, exon 4 of 4)	exon (NM_001310431, exon 4 of 4)	2715.0	NM_001310432	68760.0	Mm.35789	NM_175132	ENSMUSG00000039376	Synpo2l	1110054M18Rik|Chap	synaptopodin 2-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64811744-4	chr5	64811681	64811881	+	782.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008453, intron 1 of 5)	intron (NM_008453, intron 1 of 5)	8258.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-17869195-1	chr17	17869095	17869295	+	698.0	f1_c57bl6.idr	Intergenic	Intergenic	-14007.0	NM_008215	15116.0	Mm.255701	NM_008215	ENSMUSG00000003665	Has1	HAS	hyaluronan synthase 1	protein-coding	0.775426737746647	0.83566908000756	2.29141793919547	1.62488575815423	1.30092730042416	1.7673672804558	1.06291938241903	1.03140563786124	-0.725427124372007	0.586049508858446	0.967449368090758
Merged-chr13-90929522-2	chr13	90929422	90929622	+	678.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F1|SINE|Alu	6400.0	NM_024175	66475.0	Mm.306302	NM_024175	ENSMUSG00000049517	Rps23	2410044J15Rik	ribosomal protein S23	protein-coding	0.0702332619535843	0.082281133116115	0.0782855929355601	0.336245243786066	0.559171959961521	0.083188294198057	0.479660577161715	0.340318952769296	2.22255980022717	0.297179062408336	1
Merged-chr4-62850585-3	chr4	62850450	62850650	+	995.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-115024.0	NM_028326	72701.0	Mm.26479	NM_028326	ENSMUSG00000028358	Zfp618	2810031P15Rik|2810040O04Rik|AI415580|AI505139|D430033D05Rik|Nedd10|Znf618|bM257P7.1	zinc finger protein 618	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-103673829-3	chr2	103673738	103673938	+	916.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178890, intron 1 of 16)	intron (NM_178890, intron 1 of 16)	87432.0	NM_153126	98956.0	Mm.288005	NM_153126	ENSMUSG00000027185	Nat10	AI429152	N-acetyltransferase 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-138694892-3	chr5	138694787	138694987	+	942.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60194.0	NM_030565	80752.0	Mm.320355	NM_030565	ENSMUSG00000025854	Fam20c	C76981|DMP-4|DMP4|GEF-CK|mKIAA4081	family with sequence similarity 20, member C	protein-coding	3.02309465275748	2.27405221016369	2.85498285887551	2.29027954740853	3.11324074600057	2.8686513731613	3.49419093212098	1.47097942072051	0.501167677290715	0.537968803974873	0.953963493057627
Merged-chr5-123930706-4	chr5	123930672	123930872	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001134767)	promoter-TSS (NM_001134767)	83.0	NM_001134767	208908.0	Mm.243679	NM_001134767	ENSMUSG00000061882	Ccdc62	AI661708|G1-485-3|Gm150|repro29	coiled-coil domain containing 62	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-59083629-4	chr4	59083512	59083712	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48456.0	NM_025277	14700.0	Mm.41780	NM_025277	ENSMUSG00000038607	Gng10	AV006524	guanine nucleotide binding protein (G protein), gamma 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-53816118-1	chr1	53816018	53816218	+	550.0	f0_balb.idr	intron (NM_001001883, intron 28 of 28)	intron (NM_001001883, intron 28 of 28)	-30903.0	NM_133810	98267.0	Mm.25559	NM_133810	ENSMUSG00000026094	Stk17b	3110009A03Rik|AI120141|Drak2	serine/threonine kinase 17b (apoptosis-inducing)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131108997-1	chr1	131108897	131109097	+	1000.0	f1_balb.idr	Intergenic	Intergenic	-11154.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-11060927-2	chr16	11060827	11061027	+	558.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5371.0	NM_009223	20621.0	Mm.325800	NM_009223	ENSMUSG00000037972	Snn	2810407J07Rik|AI848521|AW547286	stannin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-37826991-8	chr13	37826819	37827019	+	878.745544	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033615)	promoter-TSS (NR_033615)	7.0	NR_033615	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-18941686-3	chr10	18941576	18941776	+	768.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14_RN|LTR|ERV1	70287.0	NM_001166402	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84979383-2	chr8	84979283	84979483	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008416)	promoter-TSS (NM_008416)	-635.0	NM_008416	16477.0	Mm.1167	NM_008416	ENSMUSG00000052837	Junb	-	jun B proto-oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-132477065-4	chr1	132476918	132477118	+	931.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172517)	promoter-TSS (NM_172517)	-349.0	NM_001357486	213464.0	Mm.132868	NM_172517	ENSMUSG00000026439	Rbbp5	4933411J24Rik|C330016J05	retinoblastoma binding protein 5, histone lysine methyltransferase complex subunit	protein-coding	-1.50561175621786	-1.47331375025452	-1.02203377115094	-1.49110398925286	-1.50334449591826	-1.47119716082604	-1.48086985756939	-1.48966786617048	-2.07776723614574	0.550394407909386	1
Merged-chr3-15332307-3	chr3	15332215	15332415	+	913.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001076679)	promoter-TSS (NM_001076679)	-13.0	NM_001076679	751864.0	Mm.431296	NM_001076679	ENSMUSG00000078783	Gm9733	-	predicted gene 9733	protein-coding	2.66478332636549	2.7449079428607	2.32457172935574	2.81726782359895	3.57026194947226	4.12774236226402	2.51718443224098	3.37128665326023	1.46812956037478	0.0264437727924088	0.217807129951936
Merged-chr5-147063514-3	chr5	147063426	147063626	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080795, intron 1 of 9)	intron (NM_080795, intron 1 of 9)	13046.0	NM_080795	140887.0	Mm.272203	NM_080795	ENSMUSG00000016520	Lnx2	9630046H24|AW209022	ligand of numb-protein X 2	protein-coding	1.77130686529393	1.46823617689968	2.54362365084407	1.34697156398036	3.8768988625022	3.29501176351063	3.99815801668164	4.32906711515156	3.71042286693502	1.7372932189766e-06	0.000104220220206406
Merged-chr10-96364011-4	chr10	96363906	96364106	+	768.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	137799.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44378631-2	chr9	44378531	44378731	+	708.666687	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021395)	promoter-TSS (NM_021395)	-859.0	NM_021395	12282.0	Mm.116721	NM_021395	ENSMUSG00000032115	Hyou1	AI415631|CBP-140|Cab140|Grp170|Orp150	hypoxia up-regulated 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-149648404-2	chr4	149648304	149648504	+	598.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001164052)	TTS (NM_001164052)	7163.0	NR_105990	102465983.0		NR_105990	ENSMUSG00000098580	Mir7023	Gm27912|mmu-mir-7023	microRNA 7023	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-126625308-4	chr3	126625229	126625429	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025438, intron 2 of 18)	intron (NM_001025438, intron 2 of 18)	28378.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	5.0052849246748	6.12423213804093	4.82668315699636	5.7721918759303	4.85216704802443	5.46982266696051	4.67038699947606	4.63044456053574	-0.682176545149553	0.060517029870473	0.363651214506749
Merged-chr7-140822062-2	chr7	140821962	140822162	+	867.3333130000001	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001001180, exon 1 of 3)	5' UTR (NM_001001180, exon 1 of 3)	116.0	NM_001001180	407812.0	Mm.359154	NM_001001180	ENSMUSG00000060314	Zfp941	-	zinc finger protein 941	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167065961-2	chr2	167065861	167066061	+	655.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_138563)	TTS (NR_138563)	668.0	NR_028540	100217443.0		NR_028540		Snord12	MBII-99	small nucleolar RNA, C/D box 12	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-105395403-4	chr9	105395297	105395497	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172461)	promoter-TSS (NM_172461)	35.0	NR_152139	66595.0	Mm.84941	NM_025651	ENSMUSG00000032567	Aste1	1100001A21Rik|AV006403	asteroid homolog 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-19187710-2	chr10	19187610	19187810	+	576.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_038022, intron 1 of 1)	L2|LINE|L2	20472.0	NR_038022	100504265.0	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30416422-2	chr7	30416353	30416553	+	855.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_011662, intron 4 of 4)	intron (NM_011662, intron 4 of 4)	2665.0	NM_011662	22177.0	Mm.46301	NM_011662	ENSMUSG00000030579	Tyrobp	DAP12|KARAP|Ly83	TYRO protein tyrosine kinase binding protein	protein-coding	0.634228063870568	1.63487710878391	0.663262553191602	0.65249989720862	1.33096680212481	0.680011325833485	1.47437265433415	1.51827245673082	1.16294355744082	0.465665786898418	0.922736970596151
Merged-chr10-95356648-2	chr10	95356548	95356748	+	551.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045337, intron 1 of 2)	intron (NR_045337, intron 1 of 2)	20372.0	NR_045337	69629.0	Mm.250542	NR_045337	ENSMUSG00000100550	2310039L15Rik	A53T-syn|G2-3|PrPsynA53T|Tg(Prnp-SNCA*A53T)23Mkle	RIKEN cDNA 2310039L15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-54904622-2	chr11	54904522	54904722	+	669.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008161, intron 1 of 4)	MIR3|SINE|MIR	1768.0	NM_008161	14778.0	Mm.200916	NM_008161	ENSMUSG00000018339	Gpx3	AA960521|EGPx|GPx|GSHPx-3|GSHPx-P	glutathione peroxidase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-47538988-4	chr19	47538892	47539092	+	937.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER67A|LTR|ERV1	-1873.0	NM_175360	108689.0	Mm.218048	NM_175360	ENSMUSG00000042694	Stn1	0610009H20Rik|2310057J23Rik|AAF-44|AAF44|AI413458|Obfc1|RPA-32	STN1, CST complex subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-94267106-4	chr2	94266988	94267188	+	962.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5689.0	NR_030431	735259.0		NR_030431	ENSMUSG00000076335	Mir670	Mirn670|mir-670|mmu-mir-670	microRNA 670	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-55534117-3	chr4	55533990	55534190	+	901.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1615.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	0.394077133444545	0.756887362465134	0.139899854606779	0.763086927974243	0.400802578839365	0.147231078152666	0.14121986063306	0.136087648912317	-2.54850426498163	0.214344251881526	1
Merged-chr2-61563397-2	chr2	61563297	61563497	+	865.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15189.0	NM_011529	21353.0	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-84615267-4	chr3	84615172	84615372	+	639.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	21698.0	NM_207278	403175.0	Mm.83086	NM_207278	ENSMUSG00000047819	Tigd4	C130063O11Rik|Gm418	tigger transposable element derived 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35868365-4	chr17	35868251	35868451	+	902.341675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175242, exon 1 of 3)	exon (NM_175242, exon 1 of 3)	1736.0	NM_175242	76448.0	Mm.359982	NM_175242	ENSMUSG00000034595	Ppp1r18	2310014H01Rik|AA407849|AI450394	protein phosphatase 1, regulatory subunit 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-55070187-2	chr13	55070087	55070287	+	796.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001293660, intron 4 of 12)	RSINE1|SINE|B4	24219.0	NM_001359757	20184.0	Mm.259301	NM_011307	ENSMUSG00000025878	Uimc1	9430016E08Rik|D330018D10Rik|D630032M02Rik|RIP110|Rxrip110	ubiquitin interaction motif containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-9913473-4	chr3	9913375	9913575	+	723.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-79796.0	NM_001195031	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-6362768-4	chr7	6362630	6362830	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001025163)	promoter-TSS (NM_001025163)	-578.0	NM_001025163	330463.0	Mm.136456	NM_177888	ENSMUSG00000055150	Zfp78	A330079D15|KRAB12|Zfp77	zinc finger protein 78	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-85587946-2	chr10	85587856	85588056	+	942.666626	f0_c57.idr|f1_c57bl6.idr	intron (NM_028709, intron 3 of 16)	intron (NM_028709, intron 3 of 16)	-10455.0	NM_001017525	74007.0	Mm.36544	NM_028709	ENSMUSG00000020042	Btbd11	6330404E16Rik	BTB (POZ) domain containing 11	protein-coding	4.07523988651562	4.2313781075365	2.37019242486128	4.2473744555646	0.999363124023443	1.2163707758999	1.15202268115291	1.09273217065796	-7.03327118387726	2.580405682668e-09	3.74512589282065e-07
Merged-chr18-76062590-1	chr18	76062490	76062690	+	668.0	f1_balb.idr	intron (NM_001357506, intron 1 of 2)	intron (NM_001357506, intron 1 of 2)	3264.0	NM_001357506	207259.0	Mm.159332	NM_145356	ENSMUSG00000044646	Zbtb7c	B230208J24Rik|Kr-pok|Zbtb36	zinc finger and BTB domain containing 7C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-80055149-2	chr12	80055049	80055249	+	662.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57864.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-110242185-2	chr7	110242090	110242290	+	634.5	f0_balb.idr|f0_c57.idr	intron (NM_009302, intron 1 of 11)	intron (NM_009302, intron 1 of 11)	20487.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-96286422-2	chr11	96286322	96286522	+	632.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010460)	promoter-TSS (NM_010460)	-224.0	NM_010460	15415.0	Mm.390366	NM_010460	ENSMUSG00000038721	Hoxb7	AI325018|Hox-2.3	homeobox B7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-31849486-2	chr17	31849338	31849538	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010831, intron 9 of 13)	intron (NM_010831, intron 9 of 13)	6366.0	NM_010831	17691.0	Mm.290941	NM_010831	ENSMUSG00000024042	Sik1	Hrt-20|Msk|Sik|Sik-1|Snf1lk	salt inducible kinase 1	protein-coding	1.59963811947537	0.820333769901587	0.79440316410432	2.70936660085087	0.742568257925342	1.71985672786986	2.12629191078304	0.777233668080455	-0.64079376811279	0.790970824129223	0.998431161219273
Merged-chr19-40678683-4	chr19	40678572	40678772	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009848, intron 1 of 9)	intron (NM_009848, intron 1 of 9)	18902.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	5.58004370829003	5.32852688631225	5.02096174848973	4.76872804602237	5.33445008655063	5.91153257288328	5.34073297271877	5.65336275564607	0.416870152438664	0.166465223464671	0.631860474643107
Merged-chr4-147422184-2	chr4	147422084	147422284	+	608.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039209, intron 1 of 2)	intron (NM_001039209, intron 1 of 2)	-131093.0	NM_001014397	433804.0	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154	zinc finger protein 985	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-128844738-2	chr6	128844638	128844838	+	861.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-18423.0	NM_030599	80782.0	Mm.6180	NM_030599	ENSMUSG00000079298	Klrb1b	Klrb1d|Ly55b|Ly55d|NKR-P1B|NKR-P1D|Nkrp1-b|Nkrp1b|Nkrp1d|ly-55b|ly-55d	killer cell lectin-like receptor subfamily B member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132491451-2	chr4	132491351	132491551	+	886.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19005.0	NM_144907	230784.0	Mm.23608	NM_144907	ENSMUSG00000028893	Sesn2	HI95|SEST2|Ses2	sestrin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-84038835-2	chr12	84038735	84038935	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_134247, exon 1 of 3)	exon (NM_134247, exon 1 of 3)	456.0	NM_134247	171282.0	Mm.482217	NM_134247	ENSMUSG00000052392	Acot4	B430212I04Rik|PTE-Ib|Pte1b|Pte2b	acyl-CoA thioesterase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-87417730-3	chr14	87417663	87417863	+	834.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253755, intron 1 of 11)	intron (NM_001253755, intron 1 of 11)	1180.0	NM_001253755	219249.0	Mm.35168	NM_172605	ENSMUSG00000022019	Tdrd3	4732418C03Rik|6720468N18	tudor domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-66474764-2	chr18	66474664	66474864	+	837.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16160.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-77519347-4	chr10	77519252	77519452	+	894.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3539.0	NM_133998	108707.0	Mm.259547	NM_133998	ENSMUSG00000032977	Fam207a	1810008A18Rik|AI303072	family with sequence similarity 207, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69881019-4	chr11	69880919	69881119	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153143)	promoter-TSS (NM_153143)	-34.0	NM_153143	216858.0	Mm.239498	NM_153143	ENSMUSG00000046731	Kctd11	AF465352|Ren	potassium channel tetramerisation domain containing 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-33986589-4	chr2	33986487	33986687	+	882.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-98641.0	NM_175184	72543.0	Mm.254914	NM_175184	ENSMUSG00000038740	Mvb12b	2610200O14Rik|2610528K11Rik|AI414895|Fam125b	multivesicular body subunit 12B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-127248603-3	chr2	127248534	127248734	+	940.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025296)	promoter-TSS (NM_025296)	659.0	NM_175145	69470.0	Mm.200889	NM_175145	ENSMUSG00000034850	Tmem127	2310003P10Rik|AI314202|AI317350	transmembrane protein 127	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-71042058-4	chr2	71041937	71042137	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145524, intron 1 of 9)	Lx8|LINE|L1	13569.0	NM_145524	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-59734431-2	chr9	59734331	59734531	+	636.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001172071, exon 3 of 3)	3' UTR (NM_001172071, exon 3 of 3)	16218.0	NM_001172069	71599.0	Mm.279070	NM_027838	ENSMUSG00000051705	Senp8	9130010J17Rik|AU020827|Den1|Nedp1|Prsc2	SUMO/sentrin specific peptidase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-107132175-4	chr11	107132038	107132238	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_176850)	promoter-TSS (NM_176850)	-216.0	NM_001359590	207165.0	Mm.343986	NM_176850	ENSMUSG00000040481	Bptf	9430093H17Rik|Falz	bromodomain PHD finger transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52625123-3	chr13	52625088	52625288	+	812.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011518, intron 7 of 13)	intron (NM_011518, intron 7 of 13)	28306.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-73534903-3	chr2	73534806	73535006	+	727.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-5419.0	NM_153138	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-46453323-2	chr4	46453223	46453423	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_130889, intron 1 of 6)	PB1D10|SINE|Alu	2397.0	NM_130889	67628.0	Mm.263913	NM_130889	ENSMUSG00000028333	Anp32b	2410015B15Rik|PAL31|PHAPI2a|Ssp29	acidic (leucine-rich) nuclear phosphoprotein 32 family, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-51208902-4	chr3	51208800	51209000	+	893.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	BGLII_B|LTR|ERVK	-15547.0	NM_009834	12457.0	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-79773243-2	chr15	79773145	79773345	+	857.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_017470, intron 1 of 3)	intron (NM_017470, intron 1 of 3)	1222.0	NM_017470	54152.0	Mm.288159	NM_017470	ENSMUSG00000022420	Dnal4	D15Ertd424e|Dnalc4	dynein, axonemal, light chain 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-36533516-3	chr3	36533410	36533610	+	881.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12065.0	NR_040411	100503068.0	Mm.389423	NR_040411	ENSMUSG00000085007	Gm11549	-	predicted gene 11549	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-88701215-4	chr1	88701126	88701326	+	940.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177305, exon 1 of 1)	exon (NM_177305, exon 1 of 1)	965.0	NM_177305	320982.0	Mm.27968	NM_177305	ENSMUSG00000049866	Arl4c	A630084M22Rik|Arl7|LAK	ADP-ribosylation factor-like 4C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-51803458-4	chr15	51803386	51803586	+	882.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080635, intron 2 of 7)	intron (NM_080635, intron 2 of 7)	61975.0	NM_080635	68135.0	Mm.289800	NM_080635	ENSMUSG00000022312	Eif3h	1110008A16Rik|40kD|9430017H16Rik|EIF3-P40|EIF3-gamma|Eif3s3	eukaryotic translation initiation factor 3, subunit H	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-21593943-1	chr18	21593843	21594043	+	823.0	f0_balb.idr	intron (NM_001081403, intron 2 of 7)	intron (NM_001081403, intron 2 of 7)	-57622.0	NM_001271580	74644.0	Mm.329311	NM_001271580		4930426D05Rik	-	RIKEN cDNA 4930426D05 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-23546910-4	chr17	23546842	23547042	+	914.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-3857.0	NR_126485	320020.0	Mm.445111	NR_126484		6330415G19Rik	-	RIKEN cDNA 6330415G19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-59260241-4	chr14	59260111	59260311	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164329)	promoter-TSS (NM_001164329)	5.0	NM_001164329	628693.0	Mm.479519	NM_001164329	ENSMUSG00000090881	Gm6904	EG628693	predicted gene 6904	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25030253-3	chr7	25030157	25030357	+	877.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360067, intron 12 of 19)	LTR50|LTR|ERVL	-24320.0	NM_001290469	232975.0	Mm.44101	NM_144921	ENSMUSG00000040907	Atp1a3	Atpa-2	ATPase, Na+/K+ transporting, alpha 3 polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-14053234-4	chr10	14053146	14053346	+	989.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358783, intron 2 of 12)	intron (NM_001358783, intron 2 of 12)	86867.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	2.42701337274346	1.42834615219905	2.17545621779436	2.11538224897289	2.2570729491077	2.64117044659852	2.32608456602992	2.95190956995416	1.09124588428688	0.207694314872178	0.696195676057849
Merged-chr8-40511805-4	chr8	40511759	40511959	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011135)	promoter-TSS (NM_011135)	76.0	NM_033560	52348.0	Mm.489696	NM_033560	ENSMUSG00000031600	Vps37a	2210018P21Rik|4930592A21Rik|AW261445|D8Ertd531e	vacuolar protein sorting 37A	protein-coding	6.46088528652399	6.21257120792177	5.92140262725977	5.5746182032165	5.5554809697743	5.859443489896	6.19814426179458	5.95353677754284	-0.195857243766602	0.453905227226025	0.919120493489568
Merged-chr8-61913088-2	chr8	61912988	61913188	+	941.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1C|Other|Other	-10394.0	NM_001293772	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-57646825-4	chr9	57646733	57646933	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304761, intron 2 of 14)	MIR|SINE|MIR	-1180.0	NM_007783	12988.0	Mm.21974	NM_007783	ENSMUSG00000032312	Csk	AW212630|p50CSK	c-src tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-34336416-4	chr15	34336319	34336519	+	890.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358780, intron 2 of 18)	intron (NM_001358780, intron 2 of 18)	21453.0	NM_001256161	77358.0	Mm.402759	NM_001256161	ENSMUSG00000094447	9430069I07Rik	-	RIKEN cDNA 9430069I07 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-29171416-1	chr11	29171316	29171516	+	651.5	f1_balb.idr	Intergenic	Intergenic	-1491.0	NM_134034	104570.0	Mm.276386	NM_134034	ENSMUSG00000020463	Ppp4r3b	AW011752|AW557776|Smek2|mKIAA1387	protein phosphatase 4 regulatory subunit 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-43516239-1	chr19	43516139	43516339	+	838.0	f1_balb.idr	intron (NM_010324, intron 1 of 8)	intron (NM_010324, intron 1 of 8)	8366.0	NM_010324	14718.0	Mm.19039	NM_010324	ENSMUSG00000025190	Got1	AI789014|Got-1|cAspAT|cCAT	glutamic-oxaloacetic transaminase 1, soluble	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30620348-1	chr7	30620248	30620448	+	545.0	f1_c57bl6.idr	intron (NM_025628, intron 3 of 3)	intron (NM_025628, intron 3 of 3)	5803.0	NM_025628	110323.0	Mm.400	NM_025628	ENSMUSG00000036751	Cox6b1	2010000G05Rik|Cox6b	cytochrome c oxidase, subunit VIb polypeptide 1	protein-coding	-0.097828607290834	-0.0684022886142821	1.29562528002724	-0.0852280700115711	-0.095929551145176	-0.0663080623853565	0.658068269216376	-0.0839240835116072	-1.42861874615129	0.523968222217374	1
Merged-chr10-25318575-4	chr10	25318450	25318650	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19387.0	NM_018747	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-42421694-4	chr6	42421606	42421806	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12829.0	NM_207028	387353.0	Mm.377914	NM_207028	ENSMUSG00000048284	Tas2r126	T2R12|T2R26|Tas2r26|Tas2r41|mGR26|mt2r35	taste receptor, type 2, member 126	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-105620673-4	chr5	105620581	105620781	+	961.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-79288.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-13961149-4	chr14	13961044	13961244	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359900, intron 1 of 8)	CpG	169.0	NM_001285780	66231.0	Mm.295875	NM_025435	ENSMUSG00000053453	Thoc7	Nif3l1bp1	THO complex 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-75438448-2	chr9	75438348	75438548	+	555.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C|LTR|ERVK	-3076.0	NM_001039522	235497.0	Mm.41508	NM_001006122	ENSMUSG00000042487	Leo1	Gm185	Leo1, Paf1/RNA polymerase II complex component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-96759289-4	chr9	96759189	96759389	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6273.0	NR_102295	319707.0	Mm.392191	NR_102293	ENSMUSG00000101581	C430002N11Rik	-	RIKEN cDNA C430002N11 gene	ncRNA	4.67931643808164	4.35864072298965	3.3379546117746	4.49866855585603	3.92972992434181	4.60616162689077	2.42582416107344	4.91834685236243	-0.0777665036062258	0.888764226321047	0.998431161219273
Merged-chr1-13336042-4	chr1	13335955	13336155	+	937.258301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008678, intron 1 of 22)	intron (NM_008678, intron 1 of 22)	36374.0	NM_001302702	17978.0	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-31780674-2	chr18	31780574	31780774	+	690.666687	f1_balb.idr|f1_c57bl6.idr	exon (NM_001242430, exon 8 of 8)	exon (NM_001242430, exon 8 of 8)	-8451.0	NM_001357480	69241.0	Mm.279898	NM_027002	ENSMUSG00000024258	Polr2d	2310002G05Rik|2610028L19Rik|HSRBP4|RBP4	polymerase (RNA) II (DNA directed) polypeptide D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-13796811-4	chr16	13796722	13796922	+	973.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039521, intron 10 of 17)	intron (NM_001039521, intron 10 of 17)	16123.0	NM_001039521	106298.0	Mm.288606	NM_001039521	ENSMUSG00000022682	Rrn3	AL023001|E130302O19Rik|R75565|TIF-1A|Tif1a	RRN3 RNA polymerase I transcription factor homolog (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-105825692-2	chr5	105825592	105825792	+	851.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50876.0	NR_030777	54367.0	Mm.248876	NM_018759	ENSMUSG00000029290	Zfp326	5730470H14Rik|ZAN75|Znf326	zinc finger protein 326	protein-coding	0.460653313723805	0.126169683396607	0.720148375202668	0.105036397914768	0.0914921172599192	0.128787079485575	1.6836151743701	0.106681106232796	1.55745404666857	0.422749766217868	0.900322118218157
Merged-chr9-70007997-1	chr9	70007897	70008097	+	835.25	f0_balb.idr	3' UTR (NM_016787, exon 11 of 11)	3' UTR (NM_016787, exon 11 of 11)	-4551.0	NM_001282084	235459.0	Mm.293117	NM_199151	ENSMUSG00000033543	Gtf2a2	TFIIA-gamma|TfIIg|Tfiia2	general transcription factor II A, 2	protein-coding	-0.226337295221258	-0.346720964626983	-0.186692400426977	-0.35304767328312	-0.00347296989118956	-0.345911192975515	-0.349512763367604	0.148469438793959	1.73986515312702	0.467616010748393	1
Merged-chr6-34217013-4	chr6	34216858	34217058	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39904.0	NM_021435	58246.0	Mm.245527	NM_021435	ENSMUSG00000018999	Slc35b4	4930474D06Rik|AB041549|AW494345	solute carrier family 35, member B4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139150072-4	chr5	139149974	139150174	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081265)	promoter-TSS (NM_001081265)	-73.0	NM_001359098	19085.0	Mm.306163	NM_008923	ENSMUSG00000025855	Prkar1b	AI385716|RIbeta	protein kinase, cAMP dependent regulatory, type I beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4642788-2	chr16	4642688	4642888	+	656.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_139307, intron 1 of 1)	intron (NM_139307, intron 1 of 1)	2843.0	NM_139307	246154.0	Mm.482140	NM_139307	ENSMUSG00000039646	Vasn	2610528G05Rik|Atia|Slitl2	vasorin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-88248344-3	chr15	88248235	88248435	+	897.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66539.0	NR_045281	328579.0	Mm.146839	NR_045281	ENSMUSG00000116331	B230214G05Rik	B230214G05	RIKEN cDNA B230214G05 gene	ncRNA	2.94419501417783	2.60125897443358	2.51538339338212	2.16223696341152	2.96770209025207	2.96747822326323	2.23907269704225	3.03833521969693	0.499168530154781	0.493618127993464	0.935679785535167
Merged-chr11-75184706-1	chr11	75184606	75184806	+	842.0	f1_c57bl6.idr	intron (NM_144491, intron 3 of 12)	intron (NM_144491, intron 3 of 12)	5777.0	NM_144491	116905.0	Mm.41496	NM_144491	ENSMUSG00000078789	Dph1	2310011M22Rik|4930488F09Rik|AW551873|Dph2l1|Ovca1	diphthamide biosynthesis 1	protein-coding	1.15131005432689	0.427159950711314	0.411740209263096	1.24831852296498	0.381641083676506	0.430570238280522	0.41518316914247	2.0424123415538	0.736030082570263	0.820251092426112	0.998431161219273
Merged-chr2-60209272-4	chr2	60209187	60209387	+	856.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020575)	promoter-TSS (NM_020575)	-649.0	NM_020575	57438.0	Mm.260635	NM_020575	ENSMUSG00000026977	March7	Axo|Axot|Gtrgeo17	membrane-associated ring finger (C3HC4) 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-97422764-4	chr15	97422678	97422878	+	840.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-175491.0	NM_001164602	105827.0	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-51743570-3	chr6	51743488	51743688	+	859.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	198295.0	NM_001361577	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-8823857-2	chr4	8823757	8823957	+	980.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355382, intron 7 of 36)	intron (NM_001355382, intron 7 of 36)	72533.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-45652564-4	chr19	45652467	45652667	+	969.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013907, intron 1 of 8)	intron (NM_013907, intron 1 of 8)	7626.0	NM_013907	30838.0	Mm.254739	NM_013907	ENSMUSG00000040913	Fbxw4	Dac|Fbw4|SHFM3|SHSF3|dactylin|dactylyn	F-box and WD-40 domain protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180795738-2	chr1	180795638	180795838	+	761.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	17867.0	NM_008210	15078.0	Mm.138832	NM_008210	ENSMUSG00000060743	H3f3a	EyeLinc14|H3.3A	H3 histone, family 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-121426522-3	chr3	121426437	121426637	+	938.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028044)	promoter-TSS (NM_028044)	-4.0	NM_028044	71994.0	Mm.275555	NM_028044	ENSMUSG00000053931	Cnn3	1600014M03Rik|C85854|Calpo3	calponin 3, acidic	protein-coding	2.6084956358413	2.85834546109279	1.25207940076647	2.16797659514392	2.83253870994316	2.79039080792729	1.26053089884799	1.48976075913081	-0.112677906373938	0.914428664036309	0.998431161219273
Merged-chr9-110888743-2	chr9	110888647	110888847	+	796.333374	f1_balb.idr|f1_c57bl6.idr	exon (NM_146228, exon 10 of 27)	exon (NM_146228, exon 10 of 27)	8425.0	NM_001146060	235633.0	Mm.86338	NM_146228	ENSMUSG00000044037	Als2cl	79H19D|79H19E|BC022645|D930044G19Rik|mRn.49018	ALS2 C-terminal like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-102700358-4	chr13	102700263	102700463	+	990.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360519, intron 1 of 2)	intron (NM_001360519, intron 1 of 2)	6805.0	NM_008533	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-98328524-4	chr7	98328421	98328621	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger9a|DNA|TcMar-Tigger	-7313.0	NM_001360615	66190.0	Mm.334041	NM_025408	ENSMUSG00000030760	Acer3	1110057L18Rik|5430429L08Rik|AV015045|Phca|aPHC	alkaline ceramidase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-53013393-1	chr2	53013293	53013493	+	773.333313	f0_balb.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	155525.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-61120753-4	chr18	61120640	61120840	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037859, intron 11 of 21)	intron (NM_001037859, intron 11 of 21)	3272.0	NR_105949	102466212.0		NR_105949	ENSMUSG00000098389	Mir6983	Gm27496|mmu-mir-6983	microRNA 6983	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-46328041-4	chr17	46327928	46328128	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_170680)	promoter-TSS (NM_170680)	-5.0	NM_170680	224814.0	Mm.76543	NM_145140	ENSMUSG00000032842	Abcc10	Mrp7|mFLJ00002	ATP-binding cassette, sub-family C (CFTR/MRP), member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-21162317-1	chr2	21162217	21162417	+	596.0	f1_c57bl6.idr	Intergenic	RLTR15|LTR|ERVK	43048.0	NM_027728	71233.0	Mm.27658	NM_027728	ENSMUSG00000026679	Enkur	4933434I06Rik|AU016229	enkurin, TRPC channel interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-71831784-4	chr6	71831664	71831864	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362138, intron 1 of 13)	CpG	444.0	NM_001253686	76614.0	Mm.235123	NM_029673	ENSMUSG00000052337	Immt	1700082C19Rik|D830041H16Rik|HMP|P87|P87/89|P89	inner membrane protein, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-53933505-4	chr11	53933409	53933609	+	877.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-41806.0	NM_011396	20520.0	Mm.42253	NM_011396	ENSMUSG00000018900	Slc22a5	Lstpl|Octn2|jvs	solute carrier family 22 (organic cation transporter), member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70894169-6	chr14	70894095	70894295	+	973.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302095, intron 1 of 6)	intron (NM_001302095, intron 1 of 6)	4088.0	NM_001302094	14586.0	Mm.32619	NM_008115	ENSMUSG00000022103	Gfra2	-	glial cell line derived neurotrophic factor family receptor alpha 2	protein-coding	2.58801713233589	1.69112245042494	2.17482635876603	1.80045249161468	2.60939517492198	2.92329735466234	2.55408143529087	1.97836262517056	0.975581067662592	0.257077677765776	0.756222001213238
Merged-chr5-135966392-2	chr5	135966292	135966492	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001160366, intron 4 of 10)	intron (NM_001160366, intron 4 of 10)	8084.0	NM_001160366	109267.0	Mm.332750	NM_001160366	ENSMUSG00000029699	Ssc4d	C330016E03Rik|S4D-SRCRB|SRCRB-S4D|Srcrb4d	scavenger receptor cysteine rich family, 4 domains	protein-coding	0.954461326873264	1.12909561389884	0.441448930868473	0.433849670176374	0.856655422505585	1.3642894753909	0.443608201372555	0.435182496963126	0.294507387026655	0.86736649333743	1
Merged-chr17-34139728-2	chr17	34139598	34139798	+	783.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_010386)	TTS (NM_010386)	-5718.0	NM_010388	15000.0	Mm.195060	NM_010388	ENSMUSG00000037548	H2-DMb2	H-2Mb2|H2-Mb2	histocompatibility 2, class II, locus Mb2	protein-coding	0.820092227962361	3.18112535514698	2.42978531552276	0.87198226714464	0.828119508451502	0.944645334527502	2.45219013893072	1.91339097214602	-1.08429815057607	0.665636588605597	0.992380258859526
Merged-chr9-95603077-4	chr9	95602980	95603180	+	960.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34548.0	NM_029620	76477.0	Mm.46016	NM_029620	ENSMUSG00000015354	Pcolce2	2400001O18Rik|Pcpe2	procollagen C-endopeptidase enhancer 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-67260638-3	chr17	67260541	67260741	+	884.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	93818.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	1.81501364960523	1.33796097888081	1.90321077449773	1.53226211149608	1.83220644639125	0.910554804360374	0.893669044617777	0.878934302047979	-1.53050721147014	0.257322629159796	0.756455611970954
Merged-chr7-19087610-2	chr7	19087510	19087710	+	605.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_037282)	TTS (NR_037282)	782.0	NR_037282	100526504.0		NR_037282	ENSMUSG00000092659	Mir3100	mir-3100|mmu-mir-3100	microRNA 3100	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-6523852-4	chr11	6523769	6523969	+	822.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	-2911.0	NM_178440	246177.0	Mm.239554	NM_178440	ENSMUSG00000020437	Myo1g	E430002D17Rik	myosin IG	protein-coding	0.756401439829494	0.376796982744259	0.368486210490765	1.20984931667791	0.352838931849972	0.378661938166191	0.726362771931962	1.04213104114711	-0.375720244062219	0.837753415254918	1
Merged-chr2-10359943-1	chr2	10359843	10360043	+	561.0	f0_balb.idr	Intergenic	Intergenic	-10508.0	NM_001198808	353282.0	Mm.329991	NM_177386	ENSMUSG00000061186	Sfmbt2	D2Wsu23e|D330030P06Rik	Scm-like with four mbt domains 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-36951150-4	chr17	36951044	36951244	+	975.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029632, intron 1 of 2)	intron (NM_029632, intron 1 of 2)	648.0	NM_029632	76497.0	Mm.46176	NM_029632	ENSMUSG00000036398	Ppp1r11	1500041B02Rik|AV117883|Hcgv|Tcte5|Tctex-5|Tctex5	protein phosphatase 1, regulatory (inhibitor) subunit 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-82766690-4	chr6	82766581	82766781	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013820, intron 1 of 17)	intron (NM_013820, intron 1 of 17)	7773.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-119635347-6	chr4	119635171	119635371	+	889.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2461.0	NM_008190	14915.0	Mm.2614	NM_008190	ENSMUSG00000023247	Guca2a	Guca2	guanylate cyclase activator 2a (guanylin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-13837128-4	chr6	13836966	13837166	+	837.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001330666, exon 4 of 4)	5' UTR (NM_001330666, exon 4 of 4)	2876.0	NM_001330666	64450.0	Mm.167625	NM_145066	ENSMUSG00000048216	Gpr85	2900026B03Rik	G protein-coupled receptor 85	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101365219-2	chr15	101365119	101365319	+	588.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028770, intron 1 of 8)	ID_B1|SINE|B4	-4133.0	NR_035462	100316694.0		NR_035462	ENSMUSG00000088459	Mir1941	mmu-mir-1941	microRNA 1941	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-34281532-3	chr10	34281408	34281608	+	873.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009433)	promoter-TSS (NM_009433)	-682.0	NM_009433	22110.0	Mm.20445	NM_009433	ENSMUSG00000047514	Tspyl1	Tspyl	testis-specific protein, Y-encoded-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-138190868-2	chr1	138190768	138190968	+	864.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15563.0	NM_001268286	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45712578-2	chr7	45712478	45712678	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_203280, exon 4 of 7)	exon (NM_203280, exon 4 of 7)	2629.0	NM_020011	56632.0	Mm.24222	NM_020011	ENSMUSG00000057342	Sphk2	C76851	sphingosine kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-32747016-2	chr5	32746935	32747135	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347332)	promoter-TSS (NM_001347332)	-693.0	NM_001347332	320951.0	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-136185577-4	chr4	136185493	136185693	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177733, intron 5 of 6)	intron (NM_177733, intron 5 of 6)	4811.0	NM_001305399	242705.0	Mm.307932	NM_177733	ENSMUSG00000018983	E2f2	E2F-2	E2F transcription factor 2	protein-coding	5.44469696634865	5.22088042949616	4.5795818300667	4.86118781881082	5.46047598469382	4.96404858403371	4.55984958687557	5.91917750508906	0.30205734345151	0.40338089036227	0.888785587454204
Merged-chr6-134267272-2	chr6	134267172	134267372	+	614.166687	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007961, exon 8 of 8)	3' UTR (NM_007961, exon 8 of 8)	-129057.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-101762786-2	chr6	101762686	101762886	+	588.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR26B_MM|LTR|ERVK	-11463.0	NR_027989	207157.0	Mm.57632	NM_177579	ENSMUSG00000052236	Gm9871	0610005I04|EG207157	predicted gene 9871	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124629011-4	chr5	124628926	124629126	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011596)	promoter-TSS (NM_011596)	-26.0	NM_011596	21871.0	Mm.1158	NM_011596	ENSMUSG00000038023	Atp6v0a2	8430408C20Rik|AI385560|ATP6a2|AW489264|Atp6n1d|Atp6n2|C76904|ISF|J6B7|SHIF|Stv1|TJ6M|TJ6s|Tj6|V-ATPase 116 kDa|V-ATPase a2	ATPase, H+ transporting, lysosomal V0 subunit A2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141535446-4	chr4	141535341	141535541	+	878.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347235, intron 1 of 14)	intron (NM_001347235, intron 1 of 14)	3156.0	NM_001347235	56381.0	Mm.299906	NM_019763	ENSMUSG00000040761	Spen	Mint|mKIAA0929	spen family transcription repressor	protein-coding	2.34483810579554	2.42409241851659	2.10007496693553	1.32452926347679	2.36410154439658	1.85515919427851	2.36113459602598	2.48268500171463	0.408901529885766	0.659597056001853	0.989539064807868
Merged-chr6-54780753-4	chr6	54780639	54780839	+	959.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36177.0	NM_199143	387524.0	Mm.286149	NM_199143	ENSMUSG00000058446	Znrf2	1190002C14Rik|AU044205|D6Ertd365e	zinc and ring finger 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88634389-1	chr3	88634289	88634489	+	668.0	f1_c57bl6.idr	intron (NM_001198913, intron 7 of 21)	intron (NM_001198913, intron 7 of 21)	12995.0	NM_001198912	16800.0	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	-0.419455401179827	-0.0669736381968747	0.134954532740124	-0.414725305237281	-0.158365624090718	-0.407305169064959	-0.411045830773983	-0.414226212778106	-1.8004995814685	0.486044238262818	1
Merged-chr6-91743060-2	chr6	91742960	91743160	+	894.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009320, intron 9 of 14)	intron (NM_009320, intron 9 of 14)	58993.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-18786887-1	chr13	18786787	18786987	+	728.0	f1_c57bl6.idr	intron (NM_172120, intron 5 of 28)	intron (NM_172120, intron 5 of 28)	69595.0	NM_172120	218035.0	Mm.27389	NM_172120	ENSMUSG00000041236	Vps41	AI317346|Vam2|mVam2	VPS41 HOPS complex subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-80338117-4	chr8	80338001	80338201	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR23|LTR|ERV1	-155944.0	NM_010369	14934.0	Mm.13123	NM_010369	ENSMUSG00000051839	Gypa	AI853584|CD235a|GPA	glycophorin A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-32700973-2	chr9	32700895	32701095	+	701.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038642, intron 1 of 6)	intron (NM_001038642, intron 1 of 6)	4953.0	NM_001038642	23871.0	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-32163640-4	chr16	32163530	32163730	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146069, intron 1 of 3)	intron (NM_146069, intron 1 of 3)	1964.0	NM_146069	224109.0	Mm.33498	NM_146069	ENSMUSG00000052384	Nrros	E430025L02Rik|Lrcc33|Lrrc33	negative regulator of reactive oxygen species	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-95213910-2	chr10	95213810	95214010	+	628.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001330138, intron 2 of 2)	intron (NM_001330138, intron 2 of 2)	-68085.0	NR_131146	628062.0		NR_131146	ENSMUSG00000112481	Gm29684	-	predicted gene, 29684	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32911263-2	chr2	32911163	32911363	+	593.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146119, intron 3 of 13)	intron (NM_146119, intron 3 of 13)	35129.0	NM_146119	227737.0	Mm.301646	NM_146119	ENSMUSG00000026796	Fam129b	9130404D14Rik	family with sequence similarity 129, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91264499-2	chr2	91264399	91264599	+	647.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166024)	promoter-TSS (NM_001166024)	-616.0	NM_001166024	77038.0	Mm.43636	NM_023854	ENSMUSG00000027255	Arfgap2	2310032E02Rik|Zfp289	ADP-ribosylation factor GTPase activating protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-79456624-4	chr15	79456492	79456692	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14449.0	NM_001359863	27373.0	Mm.30199	NM_013767	ENSMUSG00000022433	Csnk1e	AI426939|AI551861|AW457082|CK1epsilon|CKIe|KC1epsilon|tau	casein kinase 1, epsilon	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84660700-1	chr8	84660600	84660800	+	594.0	f0_c57.idr	TTS (NM_010499)	TTS (NM_010499)	2152.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	0.516375138648084	0.262064452884996	0.255105410897126	0.79718388488358	0.393637680356865	0.465968956565287	0.256642426558412	1.07591016118266	0.691983245215123	0.704256118266338	1
Merged-chr12-70910427-4	chr12	70910321	70910521	+	998.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27436.0	NM_019785	56444.0	Mm.29317	NM_019785	ENSMUSG00000021076	Actr10	Actr11|Arp11	ARP10 actin-related protein 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-45577930-2	chr17	45577830	45578030	+	615.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-4669.0	NM_008302	15516.0	Mm.2180	NM_008302	ENSMUSG00000023944	Hsp90ab1	90kDa|AL022974|C81438|Hsp84|Hsp84-1|Hsp90|Hspcb	heat shock protein 90 alpha (cytosolic), class B member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-87585772-4	chr16	87585664	87585864	+	989.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144854, intron 4 of 4)	L1MB8|LINE|L1	32434.0	NM_144854	224419.0	Mm.194466	NM_144854	ENSMUSG00000025610	Map3k7cl	C21orf7|ORF63|Tak1l	Map3k7 C-terminal like	protein-coding	0.0612770156317738	0.469406269797801	0.0759806981210177	0.0704821776024876	0.685613139395073	0.977266041590943	0.0775464019977889	0.0714452104720013	2.43848292226475	0.262282092510913	1
Merged-chr13-48574210-2	chr13	48574110	48574310	+	645.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35938.0	NR_029725	387244.0		NR_029725	ENSMUSG00000065421	Mirlet7a-1	Let-7a|Mirnlet7a|Mirnlet7a-1|let-7a-1	microRNA let7a-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-33815589-3	chr17	33815476	33815676	+	984.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030697, intron 1 of 10)	B2_Mm1a|SINE|B2	5053.0	NM_030697	80880.0	Mm.196330	NM_030697	ENSMUSG00000042099	Kank3	0610013D04Rik|Ankrd47|D17Ertd288e|NG28	KN motif and ankyrin repeat domains 3	protein-coding	2.42349496854101	2.93889742474316	3.09788652555642	3.31951555888558	4.40049709951507	3.83422974659972	4.68650315264162	4.14375256627723	1.94448896384359	0.000207207498722421	0.00555408150018798
Merged-chr3-100596499-3	chr3	100596391	100596591	+	838.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010763, intron 8 of 12)	intron (NM_010763, intron 8 of 12)	88982.0	NM_010763	17156.0	Mm.271617	NM_010763	ENSMUSG00000008763	Man1a2	AI428775|AI528764|AI854422|Man1b|PCR2	mannosidase, alpha, class 1A, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-50929698-2	chr14	50929593	50929793	+	756.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033271, intron 2 of 6)	intron (NM_001033271, intron 2 of 6)	1156.0	NM_001310506	219024.0	Mm.239117	NM_001033271	ENSMUSG00000035953	Tmem55b	BC039161|Pip4p1	transmembrane protein 55b	protein-coding	0.00982655106448262	-0.227180707370392	-0.0651390966963463	-0.234284617110079	0.0159949126404568	-0.22627254981898	-0.23031357884667	0.367647169749983	1.27525802787228	0.578127163695707	1
Merged-chr2-119047681-1	chr2	119047581	119047781	+	565.0	f1_balb.idr	intron (NM_029617, intron 1 of 23)	intron (NM_029617, intron 1 of 23)	562.0	NM_029617	76464.0	Mm.202518	NM_029617	ENSMUSG00000027326	Knl1	2310043D08Rik|5730505K17Rik|Casc5	kinetochore scaffold 1	protein-coding	1.28508969429234	2.11406176204924	1.06501575011217	0.829608645804745	1.29646842160594	0.862951471368243	1.5517085509628	1.61275534046909	-0.246859600713084	0.851401112086257	0.998431161219273
Merged-chr6-32200920-2	chr6	32200820	32201020	+	631.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_175750, exon 16 of 32)	exon (NM_175750, exon 16 of 32)	150632.0	NM_029587	76382.0	Mm.23510	NM_029587	ENSMUSG00000029766	1700012A03Rik	AI429084	RIKEN cDNA 1700012A03 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35218859-7	chr17	35218741	35218941	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13490.0	NM_010735	16992.0	Mm.87787	NM_010735	ENSMUSG00000024402	Lta	LT|LT-[a]|LT-alpha|LT[a]|LTalpha|Ltx|TNF-beta|TNFSF1|Tnfb|Tnfsf1b|Tnlg1e|hlb382	lymphotoxin A	protein-coding	2.21817499287618	1.36551757269423	2.5251168095725	3.06901265480855	2.23743533733351	2.83791557288882	1.33647509359861	2.46447813276368	-0.235439547328647	0.809225319441238	0.998431161219273
Merged-chr19-44295406-2	chr19	44295306	44295506	+	810.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009128, intron 2 of 5)	intron (NM_009128, intron 2 of 5)	1730.0	NM_009128	20250.0	Mm.487021	NM_009128	ENSMUSG00000025203	Scd2	Mir5114|Scd-2|mir-5114|swty	stearoyl-Coenzyme A desaturase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30571891-2	chr2	30571791	30571991	+	625.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-23153.0	NM_030137	78617.0	Mm.40413	NM_030137	ENSMUSG00000047363	Cstad	9530039B02Rik	CSA-conditional, T cell activation-dependent protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94913564-4	chr10	94913485	94913685	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018797, intron 2 of 30)	intron (NM_018797, intron 2 of 30)	30993.0	NM_018797	54712.0	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-60791656-2	chr18	60791558	60791758	+	870.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12191.0	NM_001042605	16149.0	Mm.439737	NM_010545	ENSMUSG00000024610	Cd74	CLIP|DHLAG|HLADG|Ia-GAMMA|Ii	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	protein-coding	1.05044169111772	3.17368319047503	1.44096613424561	2.97134098864325	1.54278971749963	3.05092874403664	2.35724188872253	1.11796957203125	-0.45677123067977	0.678990453561177	0.99525161242239
Merged-chr12-54957511-1	chr12	54957411	54957611	+	591.0	f1_balb.idr	intron (NM_013815, intron 3 of 26)	intron (NM_013815, intron 3 of 26)	28825.0	NM_013815	217578.0	Mm.479583	NM_013815	ENSMUSG00000035021	Baz1a	Acf1|B930060C03|BC065123|Gtl5|Wcrf180|cbp146	bromodomain adjacent to zinc finger domain 1A	protein-coding	-0.24719515898775	-0.229307399678234	-0.235123274509976	0.34629635399335	-0.246066476117417	-0.228002150233178	-0.233836926726517	0.71776788029746	1.02339461095834	0.682485800082394	1
Merged-chr12-21373641-4	chr12	21373565	21373765	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001277266)	promoter-TSS (NM_001277266)	-33.0	NM_009615	11491.0	Mm.27681	NM_009615	ENSMUSG00000052593	Adam17	CD156b|Tace	a disintegrin and metallopeptidase domain 17	protein-coding	7.49687603412542	7.65768410730015	7.71867140601195	7.52663383386558	7.36567220643096	7.5471967082414	7.7586287753431	7.58635437927455	-0.0332153386537712	0.819766609229884	0.998431161219273
Merged-chr11-54864908-2	chr11	54864808	54865008	+	560.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-1475.0	NM_008248	15254.0	Mm.425	NM_008248	ENSMUSG00000020267	Hint1	AA673479|Hint|Ipk1|PKCI-1|PRKCNH1	histidine triad nucleotide binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-90080295-4	chr3	90080170	90080370	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357581, intron 1 of 8)	CpG	749.0	NM_001293749	59069.0	Mm.240839	NM_022314	ENSMUSG00000027940	Tpm3	TM30nm|TMnm|Tm5NM|Tpm-5|Tpm5|Trop-5|gamma-TM|hTM30nm|hTMnm	tropomyosin 3, gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-21054722-4	chr2	21054576	21054776	+	778.424988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	85802.0	NR_033225	433408.0	Mm.386941	NR_033225		Gm13375	-	predicted gene 13375	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-84222298-4	chr13	84222191	84222391	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_138587)	promoter-TSS (NR_138587)	-5.0	NR_029418	72745.0	Mm.295063	NM_175187	ENSMUSG00000035762	Tmem161b	2810446P07Rik|AI843389	transmembrane protein 161B	protein-coding	5.92426923311529	6.06279835923748	5.73800032450714	5.3660591298406	5.53598983608544	6.05432254782981	5.91376610216228	5.33107205208278	-0.0713378777212776	0.792865285815623	0.998431161219273
Merged-chr8-122892059-2	chr8	122891959	122892159	+	723.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_037865, exon 10 of 14)	non-coding (NR_037865, exon 10 of 14)	43685.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-64835304-1	chr11	64835204	64835404	+	542.0	f0_c57.idr	Intergenic	Intergenic	-143731.0	NM_023479	68626.0	Mm.157711	NM_023479	ENSMUSG00000020549	Elac2	1110017O07Rik|D11Wsu80e|Hpc2	elaC ribonuclease Z 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-66303691-2	chr7	66303591	66303791	+	635.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146191, intron 10 of 33)	intron (NM_146191, intron 10 of 33)	78033.0	NR_106024	102465640.0		NR_106024	ENSMUSG00000098353	Mir7057	Gm27550|mmu-mir-7057	microRNA 7057	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-61321455-4	chr18	61321367	61321567	+	972.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133249, intron 2 of 11)	intron (NM_133249, intron 2 of 11)	76433.0	NR_029879	723889.0		NR_029879	ENSMUSG00000105200	Mir378a	Mir378|Mirn378|mmu-mir-378|mmu-mir-378a	microRNA 378a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-105977562-6	chr1	105977460	105977660	+	963.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4a2|LINE|L1	12722.0	NR_151625	635504.0	Mm.359717	NR_151625		Gm7160	EG635504	predicted gene 7160	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-125844649-2	chr8	125844549	125844749	+	661.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175561, intron 15 of 33)	(CTCA)n|Simple_repeat|Simple_repeat	-53265.0	NR_155422	102632990.0	Mm.429446	NR_155422		A730098A19Rik	-	RIKEN cDNA A730098A19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-65345662-4	chr14	65345581	65345781	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12995.0	NM_199029	380912.0	Mm.270087	NM_199029	ENSMUSG00000034522	Zfp395	BC053701|Gm910	zinc finger protein 395	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-97764802-2	chr4	97764692	97764892	+	620.5	f0_balb.idr|f0_c57.idr	intron (NM_001122952, intron 1 of 10)	intron (NM_001122952, intron 1 of 10)	-12834.0	NM_001122953	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69402278-2	chr11	69402178	69402378	+	797.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001017426, exon 14 of 23)	exon (NM_001017426, exon 14 of 23)	-4044.0	NM_025915	67020.0	Mm.390406	NM_025915	ENSMUSG00000045377	Tmem88	2600017H02Rik	transmembrane protein 88	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-5419434-4	chr5	5419353	5419553	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39202.0	NM_011074	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-181951422-2	chr1	181951322	181951522	+	811.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010135, intron 3 of 14)	intron (NM_010135, intron 3 of 14)	68558.0	NM_010135	13800.0	Mm.87759	NM_008680	ENSMUSG00000022995	Enah	Mena|NDPP-1|Ndpp1|WBP8	ENAH actin regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3852700-3	chr12	3852668	3852868	+	924.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007872, intron 3 of 22)	intron (NM_007872, intron 3 of 22)	9476.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70119581-3	chr14	70119467	70119667	+	918.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360404, intron 2 of 7)	intron (NM_001360404, intron 2 of 7)	19474.0	NM_001360404	57784.0	Mm.24186	NM_021328	ENSMUSG00000022089	Bin3	1700015F07Rik	bridging integrator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-98957359-1	chr9	98957259	98957459	+	541.0	f1_c57bl6.idr	3' UTR (NM_012020, exon 1 of 1)	3' UTR (NM_012020, exon 1 of 1)	1752.0	NM_012020	26927.0	Mm.151239	NM_012020	ENSMUSG00000050397	Foxl2	AU045128|BPES|PINTO|Pfrk	forkhead box L2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75659450-4	chr11	75659307	75659507	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080774, intron 5 of 31)	L2a|LINE|L2	3392.0	NM_001080775	17913.0	Mm.234502	NM_008659	ENSMUSG00000017774	Myo1c	C80397|MMIb|MYO1E|NMI|mm1beta|myr2	myosin IC	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-112284533-4	chr2	112284407	112284607	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133648)	promoter-TSS (NM_133648)	-181.0	NM_133648	107723.0	Mm.491155	NM_133648	ENSMUSG00000027130	Slc12a6	9530023I19Rik|KCC3|gaxp	solute carrier family 12, member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95631614-2	chr3	95631514	95631714	+	721.833374	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_019561, exon 4 of 4)	3' UTR (NM_019561, exon 4 of 4)	6634.0	NM_001026212	56205.0	Mm.241365	NM_019561	ENSMUSG00000038619	Ensa	1700020C18Rik|2610007F17Rik|AI451924	endosulfine alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-28617653-4	chr13	28617559	28617759	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045054, intron 5 of 7)	intron (NR_045054, intron 5 of 7)	93214.0	NR_105787	102466635.0		NR_105787	ENSMUSG00000099158	Mir6368	Gm27800|mmu-mir-6368	microRNA 6368	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-8274587-4	chr6	8274477	8274677	+	850.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302354, intron 2 of 3)	ORR1D2|LTR|ERVL-MaLR	15289.0	NM_001302353	100036521.0	Mm.446106	NM_001302353	ENSMUSG00000089862	Umad1	Gm16039	UMAP1-MVP12 associated (UMA) domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-142698524-8	chr2	142698418	142698618	+	907.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355123, intron 23 of 26)	intron (NM_001355123, intron 23 of 26)	202946.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46315813-2	chr19	46315713	46315913	+	569.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028627, intron 12 of 17)	intron (NM_028627, intron 12 of 17)	9883.0	NM_001177370	18034.0	Mm.102365	NM_019408	ENSMUSG00000025225	Nfkb2	NF-kappaB2|lyt|p49|p49/p100|p50B|p52	nuclear factor of kappa light polypeptide gene enhancer in B cells 2, p49/p100	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-6223770-2	chr2	6223670	6223870	+	632.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_040333, intron 1 of 6)	intron (NR_040333, intron 1 of 6)	-10776.0	NM_024208	67856.0	Mm.38342	NM_024208	ENSMUSG00000039063	Echdc3	2310005D12Rik|AI662097	enoyl Coenzyme A hydratase domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-65429401-3	chr5	65429317	65429517	+	873.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009466, intron 1 of 11)	intron (NM_009466, intron 1 of 11)	6425.0	NM_009466	22235.0	Mm.344831	NM_009466	ENSMUSG00000029201	Ugdh	Udpgdh	UDP-glucose dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-109999264-1	chr10	109999164	109999364	+	542.0	f1_c57bl6.idr	intron (NM_001081035, intron 1 of 38)	intron (NM_001081035, intron 1 of 38)	955.0	NM_001081035	260315.0	Mm.225050	NM_177797	ENSMUSG00000020181	Nav3	4732483H20Rik|9630020C08Rik|POMFIL1|Pomfil1p|mKIAA0938|unc53H3	neuron navigator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-131228263-2	chr3	131228163	131228363	+	934.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	43838.0	NM_008212	15107.0	Mm.260164	NM_008212	ENSMUSG00000027984	Hadh	AA409008|AU019341|AW742602|HCDH|Hadhsc|Schad	hydroxyacyl-Coenzyme A dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-96833164-1	chr11	96833064	96833264	+	641.0	f0_balb.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-3196.0	NM_008686	18023.0	Mm.6743	NM_008686	ENSMUSG00000038615	Nfe2l1	AA408798|AW212678|LCR-F1|Lcrf1|NRF1|TCF-11|TCF11	nuclear factor, erythroid derived 2,-like 1	protein-coding	1.1851429054074	0.75034859997499	0.734488106165781	0.721968956172116	2.02641803902999	1.51442005423381	0.967728939358352	1.61963748078633	3.09020004289218	0.0374686190679725	0.275404330693164
Merged-chr12-105785129-4	chr12	105785058	105785258	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011112, intron 1 of 21)	CpG	461.0	NM_001347440	18789.0	Mm.255877	NM_011112	ENSMUSG00000021111	Papola	Pap|PapIII|Plap	poly (A) polymerase alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-57773995-4	chr6	57773914	57774114	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146168, intron 3 of 4)	intron (NM_146168, intron 3 of 4)	51111.0	NM_146168	232023.0	Mm.24642	NM_146168	ENSMUSG00000037788	Vopp1	AW146242|Ecop	vesicular, overexpressed in cancer, prosurvival protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33580722-2	chr16	33580622	33580822	+	808.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083902, intron 4 of 11)	intron (NM_001083902, intron 4 of 11)	62127.0	NM_001083902	171286.0	Mm.35253	NM_134251	ENSMUSG00000035506	Slc12a8	CCC9|E330020C02Rik	solute carrier family 12 (potassium/chloride transporters), member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16045500-2	chr7	16045400	16045600	+	966.214294	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26345.0	NM_001347559	666528.0	Mm.290718	NM_001099277	ENSMUSG00000078796	Zfp541	EG666528|Znf541	zinc finger protein 541	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-126624131-8	chr3	126623874	126624074	+	835.395813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025438, intron 2 of 18)	intron (NM_001025438, intron 2 of 18)	27023.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	1.22981684562714	1.8948332611689	0.846928264477297	0.838658986866451	1.24017643656373	1.9707413882967	1.03747982350212	0.840102997090773	0.292528357638631	0.841024806704121	0.998431161219273
Merged-chr12-28632270-1	chr12	28632170	28632370	+	668.0	f1_balb.idr	intron (NM_011300, intron 5 of 6)	intron (NM_011300, intron 5 of 6)	3683.0	NM_011300	20115.0	Mm.279839	NM_011300	ENSMUSG00000061477	Rps7	Mtu|Rps7A|S7	ribosomal protein S7	protein-coding	-0.0784488058913167	0.423132201630049	-0.0681562445294807	-0.072028893168875	-0.0774945100472482	0.4325091818296	-0.0670484127797835	0.460603670252611	1.12448926916922	0.626702593700528	1
Merged-chr13-54206446-3	chr13	54206328	54206528	+	965.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153432, intron 1 of 3)	intron (NR_153432, intron 1 of 3)	14295.0	NR_153432	15466.0	Mm.57243	NM_008286	ENSMUSG00000034987	Hrh2	H2R|HH2R	histamine receptor H2	protein-coding	2.12058895278108	1.36845443039159	1.82148288049459	2.90531887569267	3.17929792435928	2.41404478932775	1.61195287229803	2.9205127761705	0.964760808123588	0.303439167446543	0.805462835517226
Merged-chr10-76513384-3	chr10	76513284	76513484	+	857.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019434, intron 28 of 28)	MTD-int|LTR|ERVL-MaLR	-18221.0	NM_146006	16987.0	Mm.55075	NM_146006	ENSMUSG00000033105	Lss	2810025N20Rik|D10Ertd116e|Osc	lanosterol synthase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78911359-1	chr15	78911259	78911459	+	664.0	f1_balb.idr	exon (NM_001316684, exon 18 of 18)	exon (NM_001316684, exon 18 of 18)	-2560.0	NM_020271	57028.0	Mm.263169	NM_020271	ENSMUSG00000116165	Pdxp	1600027H05Rik|AB041662|PLPP	pyridoxal (pyridoxine, vitamin B6) phosphatase	protein-coding	-0.351189133006845	-0.33498139703096	-0.340257891928046	0.120748710724734	-0.350168355042935	-0.33379633853607	-0.339091392003185	0.605431110781141	1.43611288496741	0.578797044830496	1
Merged-chr8-120666292-2	chr8	120666192	120666392	+	686.799988	f1_balb.idr|f1_c57bl6.idr	intron (NM_010926, intron 1 of 4)	B3A|SINE|B2	1820.0	NM_010926	18117.0	Mm.2136	NM_010926	ENSMUSG00000031819	Emc8	Cox4nb|Fam158b|Noc4	ER membrane protein complex subunit 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45336576-3	chr7	45336486	45336686	+	871.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010473, exon 1 of 6)	exon (NM_010473, exon 1 of 6)	1317.0	NM_010473	15464.0	Mm.39968	NM_010473	ENSMUSG00000038239	Hrc	-	histidine rich calcium binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-32542287-3	chr11	32542198	32542398	+	870.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 1 of 18)	intron (NM_009288, intron 1 of 18)	9032.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	1.254050201631	1.42996596578117	1.11304686746862	0.929070814428128	1.03699949646342	0.984603741118852	0.758603268069336	1.62298129487929	-0.166358714285485	0.901693700027507	0.998431161219273
Merged-chr4-141663725-3	chr4	141663606	141663806	+	991.2777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347237, intron 1 of 18)	CpG	409.0	NM_001347237	69582.0	Mm.33220	NM_001033150	ENSMUSG00000028917	Plekhm2	2310034J19Rik|AI854247|mKIAA0842	pleckstrin homology domain containing, family M (with RUN domain) member 2	protein-coding	3.16126596633071	2.63070587784832	3.68869844457677	3.72770378903781	3.95914352580174	3.76140763729177	4.40230074406798	3.8115542837993	0.922571482747007	0.078185577159849	0.425621848803933
Merged-chr9-54500072-2	chr9	54499972	54500172	+	835.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172771, intron 1 of 43)	RSINE1|SINE|B4	1554.0	NM_172771	235380.0	Mm.93636	NM_172771	ENSMUSG00000041268	Dmxl2	6330586A12|6430411K14Rik|E130119P06Rik|mKIAA0856	Dmx-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-125339237-4	chr5	125339146	125339346	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205083, intron 1 of 10)	intron (NM_001205083, intron 1 of 10)	1848.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35045317-4	chr17	35045212	35045412	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001146215, exon 4 of 25)	exon (NM_001146215, exon 4 of 25)	1310.0	NM_013600	17687.0	Mm.24192	NM_013600	ENSMUSG00000007035	Msh5	Mut5	mutS homolog 5	protein-coding	-0.39266749143573	-0.37918178880696	0.300864665086138	-0.387003345023526	0.191845734706177	-0.378187561482402	-0.38262138181903	-0.386407744500582	-0.328695801893993	0.902428204388329	1
Merged-chr13-112001312-3	chr13	112001181	112001381	+	845.966675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	133345.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65908947-4	chr9	65908873	65909073	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019797)	promoter-TSS (NM_019797)	-37.0	NM_173185	214897.0	Mm.325816	NM_173185	ENSMUSG00000032384	Csnk1g1	9130020E21Rik	casein kinase 1, gamma 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-125546526-3	chr7	125546431	125546631	+	906.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC|LINE|L1	-5751.0	NM_001008700	16190.0	Mm.233802	NM_010557	ENSMUSG00000030748	Il4ra	CD124|Il4r	interleukin 4 receptor, alpha	protein-coding	2.08937650889626	1.0031803974549	2.28877318610964	2.13114837308762	1.14895397032489	1.00852475048898	0.984346987286126	2.22935476974792	-1.33003084945657	0.296109186972382	0.798938452555064
Merged-chr10-80018881-4	chr10	80018777	80018977	+	831.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027521)	promoter-TSS (NM_027521)	-798.0	NM_027521	70719.0	Mm.243954	NM_027521	ENSMUSG00000035697	Arhgap45	6330406L22Rik|AW539505|Ha-1|Hmha1	Rho GTPase activating protein 45	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-84273065-4	chr17	84272971	84273171	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183021, intron 29 of 37)	intron (NM_183021, intron 29 of 37)	-85124.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-193060331-4	chr1	193060253	193060453	+	761.508301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-24578.0	NM_181546	329324.0	Mm.76710	NM_181546	ENSMUSG00000016200	Syt14	B230320I09Rik|sytXIV	synaptotagmin XIV	protein-coding	1.89218743465791	2.96832724116664	2.47508624464913	2.28319401790092	1.90810034408216	1.94918165350886	3.30491985065065	2.15979757379216	0.055191074136601	0.94903107569977	0.998431161219273
Merged-chr6-87555883-2	chr6	87555783	87555983	+	593.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22624.0	NM_001286610	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55161489-4	chr14	55161377	55161577	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44542.0	NM_177049	319984.0	Mm.19047	NM_177049	ENSMUSG00000022208	Jph4	9330157P13Rik|JP-4|JPHL1	junctophilin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-34028943-4	chr1	34028848	34029048	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134448, intron 1 of 97)	L1MEc|LINE|L1	17123.0	NM_134448	13518.0	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-120359827-3	chr14	120359728	120359928	+	685.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360376, intron 2 of 8)	intron (NM_001360376, intron 2 of 8)	53376.0	NM_001360376	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-79661592-4	chr17	79661547	79661747	+	815.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201361, intron 5 of 10)	intron (NM_201361, intron 5 of 10)	46747.0	NM_201361	381110.0	Mm.209801	NM_201361	ENSMUSG00000036368	Rmdn2	AW061290|Fam82a1|RMD-2|mRMD-2	regulator of microtubule dynamics 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-31632658-2	chr18	31632558	31632758	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1710.0	NM_001357554	269003.0	Mm.194538	NM_172965	ENSMUSG00000024260	Sap130	2610304F09Rik|6720406D06	Sin3A associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-160872673-3	chr2	160872591	160872791	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177263, intron 1 of 3)	CpG	299.0	NM_177263	320799.0	Mm.436734	NM_177263	ENSMUSG00000035877	Zhx3	1810059C13Rik|4932418O04Rik|9530010N21Rik|Tix1|mKIAA0395	zinc fingers and homeoboxes 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-108257036-4	chr3	108256918	108257118	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011967)	promoter-TSS (NM_011967)	92.0	NM_011967	26442.0	Mm.208883	NM_011967	ENSMUSG00000068749	Psma5	ZETA	proteasome (prosome, macropain) subunit, alpha type 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-63270563-3	chr15	63270465	63270665	+	977.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	209043.0	NR_045279	432958.0	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-26921959-2	chr2	26921859	26922059	+	767.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_011512, exon 6 of 6)	exon (NM_011512, exon 6 of 6)	-5429.0	NM_013677	20930.0	Mm.347512	NM_013677	ENSMUSG00000015790	Surf1	0610010F23Rik|Surf-1	surfeit gene 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-100402041-3	chr13	100401936	100402136	+	797.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	50828.0	NM_008670	17940.0	Mm.6898	NM_008670	ENSMUSG00000021640	Naip1	AV364616|Birc1a|D13Lsd1|Naip|Naip-rs1	NLR family, apoptosis inhibitory protein 1	protein-coding	0.0152540690601272	-0.411351305904306	-0.414777093678987	-0.417406077117962	-0.0675127459369794	-0.41057623987671	-0.105512566712662	-0.416947687641422	0.508557746736728	0.844094024085668	1
Merged-chr14-57999247-4	chr14	57999084	57999284	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028643)	promoter-TSS (NM_028643)	78.0	NM_028643	68514.0	Mm.26834	NM_028643	ENSMUSG00000021973	Micu2	1110008L20Rik|4833427E09Rik|AU041871|Efha1|Smhs2	mitochondrial calcium uptake 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-105662066-4	chr5	105661938	105662138	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37931.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	6.65402850029088	7.29728639198841	6.85548842493879	6.85914491852924	7.07672677029581	6.43203280329262	7.06182272085181	6.64093876210467	-0.102010534008691	0.621768973819534	0.979537295922371
Merged-chr3-96052124-3	chr3	96052065	96052265	+	792.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013841, intron 3 of 14)	intron (NM_013841, intron 3 of 14)	6290.0	NM_013841	22365.0	Mm.263185	NM_013841	ENSMUSG00000015747	Vps45	AI462172|AW554165|mVps45	vacuolar protein sorting 45	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-120017697-2	chr9	120017597	120017797	+	607.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_011724, exon 2 of 3)	exon (NM_011724, exon 2 of 3)	5901.0	NM_011724	22437.0	Mm.10117	NM_011724	ENSMUSG00000079243	Xirp1	AI415219|Cmya1	xin actin-binding repeat containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-169934565-4	chr2	169934473	169934673	+	940.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28614.0	NR_131974	446211.0	Mm.266854	NR_131974	ENSMUSG00000103935	AY702102	STDP1	cDNA sequence AY702102	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-112160354-4	chr10	112160264	112160464	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3257.0	NM_001310675	353025.0	Mm.194428	NM_178278	ENSMUSG00000035694	Caps2	D630005B03Rik	calcyphosphine 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-63129170-4	chr14	63129076	63129276	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007798, intron 1 of 9)	intron (NM_007798, intron 1 of 9)	6714.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102425523-4	chr12	102425399	102425599	+	812.950012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011175, intron 1 of 13)	B3A|SINE|B2	14314.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	2.7596029825247	1.98406608668087	2.51976900086433	3.33874357000594	2.78241783712938	1.7701418637596	2.11756338608011	2.34046693602801	-0.891783085947349	0.28146429827652	0.784196698058662
Merged-chr1-180972358-4	chr1	180972262	180972462	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144794, intron 20 of 22)	intron (NM_144794, intron 20 of 22)	29844.0	NM_144794	208795.0	Mm.185518	NM_144794	ENSMUSG00000026519	Tmem63a	BC014795|Tmem64a	transmembrane protein 63a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-20311586-4	chr10	20311478	20311678	+	861.116699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153787)	promoter-TSS (NM_153787)	-891.0	NM_001025392	72567.0	Mm.294783	NM_153787	ENSMUSG00000037608	Bclaf1	2610102K23Rik|2700025J07Rik|2810454G14Rik|5730534O06Rik|AI450190|AW556225|Btf|mKIAA0164	BCL2-associated transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-19508179-3	chr10	19508072	19508272	+	942.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_152784)	TTS (NR_152784)	13529.0	NR_152785	102635880.0	Mm.331974	NR_152784	ENSMUSG00000110902	Gm33104	-	predicted gene, 33104	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-106830365-2	chr1	106830265	106830465	+	577.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30810.0	NM_001360853	20724.0	Mm.268618	NM_009257	ENSMUSG00000067006	Serpinb5	1110036M19Rik|AI462524|AI646751|Maspin|PI-5|Spi7|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-64593546-2	chr17	64593446	64593646	+	706.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR67B|LTR|ERVL	-8103.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-67295824-3	chr5	67295687	67295887	+	857.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-11168.0	NM_178651	109108.0	Mm.234455	NM_178651	ENSMUSG00000029221	Slc30a9	2310024J23Rik|AL024256|GAC63|HUEL|znT-9	solute carrier family 30 (zinc transporter), member 9	protein-coding	4.4180180918639	3.88753142612103	4.84986126366961	4.79644786704497	3.3224787682905	3.31749032853841	3.42395081667083	2.96122387524723	-1.7757036871288	0.000194096536138525	0.00526871095156114
Merged-chr1-152511457-4	chr1	152511347	152511547	+	960.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_177756)	TTS (NM_177756)	111580.0	NM_177756	269132.0	Mm.23782	NM_177756	ENSMUSG00000032649	Colgalt2	AI427652|D730024P12|Glt25d2	collagen beta(1-O)galactosyltransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-77318921-3	chr11	77318818	77319018	+	748.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177710, intron 1 of 14)	RMER6A|LTR|ERVK	-29362.0	NM_001291190	237860.0	Mm.440381	NM_177710	ENSMUSG00000037926	Ssh2	SSH-2|SSH-2L|mSSH-2L	slingshot protein phosphatase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-5379296-4	chr6	5379207	5379407	+	857.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4079.0	NM_023048	65255.0	Mm.51340	NM_023048	ENSMUSG00000042607	Asb4	8430401O13Rik|AV117194|AW060255	ankyrin repeat and SOCS box-containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-76341267-2	chr12	76341167	76341367	+	560.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16376.0	NM_001101471	238276.0	Mm.311452	NM_001101471	ENSMUSG00000021057	Akap5	3526401B18Rik|AKAP 150|AKAP-5|AKAP150|BB098886|Gm258|P150	A kinase (PRKA) anchor protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-29445625-1	chr10	29445525	29445725	+	567.0	f0_balb.idr	Intergenic	Intergenic	-83183.0	NM_001110197	68031.0	Mm.28930	NM_026518	ENSMUSG00000038876	Rnf146	2610509H23Rik|Iduna	ring finger protein 146	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-88308064-2	chr1	88307964	88308164	+	937.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134252, intron 2 of 26)	intron (NM_134252, intron 2 of 26)	1352.0	NM_134252	171382.0	Mm.218753	NM_134252	ENSMUSG00000036251	Trpm8	CMR1|LTRPC6|LTrpC-6|TRPP8|Trp-p8	transient receptor potential cation channel, subfamily M, member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-80131622-3	chr17	80131510	80131710	+	913.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176963, intron 1 of 6)	intron (NM_176963, intron 1 of 6)	4139.0	NM_176963	319625.0	Mm.29098	NM_176963	ENSMUSG00000035473	Galm	A530057M15Rik|AU015645|AU020959	galactose mutarotase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-36402075-3	chr3	36401960	36402160	+	836.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR41C|LTR|ERV1	73464.0	NR_105976	102466786.0		NR_105976	ENSMUSG00000098808	Mir7009	Gm27472|mmu-mir-7009	microRNA 7009	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-68408325-4	chr11	68408226	68408426	+	801.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21500.0	NM_008744	18208.0	Mm.39095	NM_008744	ENSMUSG00000020902	Ntn1	AI561871|BC019633|Netrin-1	netrin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96820310-2	chr3	96820210	96820410	+	641.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163497, intron 1 of 3)	intron (NM_001163497, intron 1 of 3)	-5789.0	NM_018767	54215.0	Mm.34693	NM_018767	ENSMUSG00000038304	Cd160	AU045688|By55	CD160 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-5366708-2	chr12	5366608	5366808	+	587.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164493, intron 1 of 13)	intron (NM_001164493, intron 1 of 13)	8974.0	NM_001164493	208439.0	Mm.388281	NM_001164493	ENSMUSG00000020627	Klhl29	A230106N14Rik|Gm68|Kbtbd9|mKIAA1921	kelch-like 29	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-47405730-4	chr19	47405638	47405838	+	762.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008018, intron 2 of 14)	G-rich|Low_complexity|Low_complexity	58673.0	NM_001164717	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-101119757-3	chr13	101119638	101119838	+	705.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-112389.0	NR_046158	328324.0	Mm.402274	NR_046158	ENSMUSG00000114590	5930438M14Rik	5930438M14	RIKEN cDNA 5930438M14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127606680-1	chr10	127606580	127606780	+	598.0	f0_balb.idr	intron (NM_008512, intron 4 of 88)	B3|SINE|B2	14468.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	3.67698498928897	3.09515833958172	2.73319528963945	2.78289271355188	3.84612633653001	2.52207948286301	3.88434453523984	3.30200454682498	0.576897094210914	0.36119590612149	0.856978223659267
Merged-chr3-89236664-2	chr3	89236564	89236764	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_121683, intron 9 of 10)	intron (NR_121683, intron 9 of 10)	7608.0	NM_013605	17829.0	Mm.16193	NM_013605	ENSMUSG00000042784	Muc1	CD227|EMA|Muc-1	mucin 1, transmembrane	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-68359676-4	chr15	68359556	68359756	+	878.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18367.0	NR_029718	387228.0		NR_029718	ENSMUSG00000065437	Mir30d	Mirn30d|mir-30d|mmu-mir-30d	microRNA 30d	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-10540366-4	chr13	10540260	10540460	+	655.283325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR42-int|LTR|ERVK	-179557.0	NM_033269	12671.0	Mm.342315	NM_033269	ENSMUSG00000046159	Chrm3	Chrm-3|M3|M3R	cholinergic receptor, muscarinic 3, cardiac	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41445871-4	chr19	41445748	41445948	+	977.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60778.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	3.60521754192482	4.23993992841199	2.40423853269187	2.49918444859476	2.52223135553904	3.36091329950003	3.51634478389679	4.15765526814865	0.149245620963986	0.826750983154297	0.998431161219273
Merged-chr18-82469532-3	chr18	82469427	82469627	+	697.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5596.0	NM_001025245	17196.0	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3841028-2	chr12	3840928	3841128	+	678.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007872, intron 2 of 22)	intron (NM_007872, intron 2 of 22)	21216.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-127147873-4	chr6	127147753	127147953	+	973.366699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009829, intron 2 of 4)	intron (NM_009829, intron 2 of 4)	-1536.0	NR_040274	77558.0	Mm.358918	NR_040273	ENSMUSG00000097166	9330179D12Rik	-	RIKEN cDNA 9330179D12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-14233136-4	chr2	14233023	14233223	+	954.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008625, intron 1 of 29)	L2c|LINE|L2	3709.0	NM_008625	17533.0	Mm.2019	NM_008625	ENSMUSG00000026712	Mrc1	AW259686|CD206|MR	mannose receptor, C type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-96114499-1	chr6	96114399	96114599	+	572.0	f0_balb.idr	intron (NM_182808, intron 1 of 4)	intron (NM_182808, intron 1 of 4)	1345.0	NM_182808	320265.0	Mm.489890	NM_182808	ENSMUSG00000059187	Fam19a1	C630007B19Rik|FAM19A1 TAFA-1|TAFA1|Tafa-1	family with sequence similarity 19, member A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-30009542-2	chr5	30009442	30009642	+	890.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3572.0	NM_001314054	16193.0	Mm.1019	NM_031168	ENSMUSG00000025746	Il6	Il-6	interleukin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-53313326-4	chr19	53313179	53313379	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360348, intron 1 of 5)	CpG	1834.0	NM_001360348	17859.0	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4667386-3	chr16	4667293	4667493	+	898.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030205, intron 6 of 27)	intron (NM_030205, intron 6 of 27)	12327.0	NM_030205	78885.0	Mm.325512	NM_030205	ENSMUSG00000039637	Coro7	0610011B16Rik|AW048373|AW556392	coronin 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-113119684-4	chr12	113119578	113119778	+	996.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054081, intron 3 of 19)	intron (NM_054081, intron 3 of 19)	-20558.0	NM_024223	68337.0	Mm.133825	NM_024223	ENSMUSG00000006356	Crip2	0610010I23Rik|AW743261|C77570|CRP2|CRP4|Crp|ESP1|Hlp	cysteine rich protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-64908983-2	chr16	64908883	64909083	+	574.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17B|LTR|ERVK	56982.0	NM_178647	106143.0	Mm.10160	NM_178647	ENSMUSG00000054604	Cggbp1	AA960172|AL023996|AW045841	CGG triplet repeat binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-137411631-4	chr7	137411547	137411747	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029886)	promoter-TSS (NM_029886)	-891.0	NM_029886	77252.0	Mm.29184	NM_029886	ENSMUSG00000040139	9430038I01Rik	-	RIKEN cDNA 9430038I01 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-73433679-4	chr14	73433572	73433772	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48383.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-31242196-1	chr5	31242096	31242296	+	727.0	f1_c57bl6.idr	intron (NM_147201, intron 1 of 17)	intron (NM_147201, intron 1 of 17)	1278.0	NM_147201	192292.0	Mm.292040	NM_147201	ENSMUSG00000029148	Nrbp1	B230344L17Rik|Nrbp	nuclear receptor binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-50494235-4	chr2	50494152	50494352	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	139227.0	NR_154590	102634280.0		NR_154590		Gm48908	-	predicted gene 48908	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-30719012-6	chr10	30718894	30719094	+	958.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358842, intron 3 of 14)	intron (NM_001358842, intron 3 of 14)	-63127.0	NM_001111267	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-34433135-4	chr12	34433015	34433215	+	993.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_024124, exon 4 of 12)	exon (NM_024124, exon 4 of 12)	95774.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-102012611-2	chr7	102012511	102012711	+	559.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133947, intron 20 of 24)	intron (NM_133947, intron 20 of 24)	5544.0	NM_010531	16068.0	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83270628-2	chr11	83270528	83270728	+	609.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16098.0	NM_001166028	237890.0	Mm.297670	NM_001166028	ENSMUSG00000082101	Slfn14	Gm20|Slfn14-ps	schlafen 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-93519111-4	chr15	93519000	93519200	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033217, intron 1 of 7)	CpG	76791.0	NM_001033217	106042.0	Mm.150314	NM_001033217	ENSMUSG00000036158	Prickle1	1110058P22Rik|AW215793|Prickle|b2b019Clo|mpk1	prickle planar cell polarity protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-83732962-4	chr17	83732869	83733069	+	973.8250119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054082, intron 3 of 16)	B3A|SINE|B2	26806.0	NM_001171052	116871.0	Mm.277668	NM_054082	ENSMUSG00000055817	Mta3	1110002J22Rik|mKIAA1266	metastasis associated 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-66060534-4	chr7	66060446	66060646	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_152094, exon 1 of 8)	non-coding (NR_152094, exon 1 of 8)	210.0	NM_021336	68981.0	Mm.22362	NM_021336	ENSMUSG00000030512	Snrpa1	1500015N06Rik	small nuclear ribonucleoprotein polypeptide A'	protein-coding	4.64524295177517	2.50032458155639	4.70333862401284	3.82790140741828	4.20538378999553	3.95035718677786	4.27807100210734	3.84752318559347	-0.123222457292659	0.81629509282738	0.998431161219273
Merged-chr19-40723835-1	chr19	40723735	40723935	+	841.0	f1_balb.idr	intron (NM_001304721, intron 4 of 9)	L2a|LINE|L2	64065.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	2.85768572474409	1.34657355964061	2.328962984877	1.26652970056313	2.27170886777978	2.28340082721307	3.63934473937991	2.61758214295096	1.36762614995615	0.151413931233108	0.604520282650752
Merged-chr14-99048467-2	chr14	99048367	99048567	+	757.208374	f1_balb.idr|f1_c57bl6.idr	intron (NR_153765, intron 2 of 12)	MTC|LTR|ERVL-MaLR	2090.0	NM_175265	77744.0	Mm.23503	NM_175265	ENSMUSG00000022070	Bora	6720463M24Rik|AI317232	bora, aurora kinase A activator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-53010919-3	chr9	53010807	53011007	+	923.711121	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR44B|LTR|ERVK	237205.0	NM_029936	77591.0	Mm.133560	NM_029936	ENSMUSG00000053289	Ddx10	4632415A01Rik|AI646054	DEAD (Asp-Glu-Ala-Asp) box polypeptide 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-119427626-2	chr8	119427526	119427726	+	651.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9536.0	NM_027950	71839.0	Mm.272357	NM_027950	ENSMUSG00000074063	Osgin1	1700012B18Rik|Okl38	oxidative stress induced growth inhibitor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-16735182-1	chr3	16735082	16735282	+	725.0	f1_c57bl6.idr	Intergenic	Intergenic	-81912.0	NR_153388	102632048.0	Mm.417635	NR_153388		Gm30223	-	predicted gene, 30223	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19178367-2	chr7	19178269	19178469	+	951.214294	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347582, intron 1 of 21)	intron (NM_001347582, intron 1 of 21)	1948.0	NM_001347582	72205.0	Mm.154121	NM_028153	ENSMUSG00000040811	Eml2	1600029N02Rik|EMAP-2	echinoderm microtubule associated protein like 2	protein-coding	1.7968028556607	1.14485301997109	2.15835350954271	1.77838953134412	1.91065919940582	1.1495551927369	2.17612032307024	1.78753826261047	0.113595897864318	0.919630239560922	0.998431161219273
Merged-chr11-16988037-4	chr11	16987941	16988141	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019549, intron 5 of 9)	intron (NM_019549, intron 5 of 9)	20677.0	NM_019549	56193.0	Mm.98232	NM_019549	ENSMUSG00000020120	Plek	2010300B13Rik	pleckstrin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-8338446-2	chr6	8338346	8338546	+	883.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001302354, intron 2 of 3)	L1_Mus4|LINE|L1	79158.0	NM_001302353	100036521.0	Mm.446106	NM_001302353	ENSMUSG00000089862	Umad1	Gm16039	UMAP1-MVP12 associated (UMA) domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-133973421-3	chr6	133973321	133973521	+	618.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62279.0	NM_001303102	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-92369281-4	chr5	92369185	92369385	+	744.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310664, intron 2 of 10)	intron (NM_001310664, intron 2 of 10)	-5989.0	NR_038116	56066.0	Mm.131723	NM_019494	ENSMUSG00000060183	Cxcl11	Cxc11|H174|I-tac|Ip9|Itac|Scyb11|Scyb9b|b-R1|betaR1	chemokine (C-X-C motif) ligand 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24595830-2	chr17	24595730	24595930	+	635.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001286720)	TTS (NM_001286720)	36797.0	NM_011647	22084.0	Mm.30435	NM_011647	ENSMUSG00000002496	Tsc2	Nafld|Tcs2	tuberous sclerosis 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-85963625-4	chr15	85963487	85963687	+	893.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009886, intron 2 of 34)	MTD|LTR|ERVL-MaLR	70190.0	NM_009886	12614.0	Mm.22680	NM_009886	ENSMUSG00000016028	Celsr1	Adgrc1|Crsh|Scy|crash	cadherin, EGF LAG seven-pass G-type receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-70704629-4	chr2	70704588	70704788	+	979.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43179.0	NM_027352	70231.0	Mm.271950	NM_027352	ENSMUSG00000014959	Gorasp2	0610011A07Rik|2410043M02Rik|5730520M13Rik|9430094F20Rik|AW552058|GOLPH2|GRASP55|GRS2|p59	golgi reassembly stacking protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167802791-4	chr2	167802670	167802870	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	111593.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-23993402-4	chr16	23993293	23993493	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4541.0	NM_009744	12053.0	Mm.347398	NM_009744	ENSMUSG00000022508	Bcl6	Bcl5	B cell leukemia/lymphoma 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-31512683-4	chr5	31512589	31512789	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_133756, exon 14 of 14)	3' UTR (NM_133756, exon 14 of 14)	14073.0	NM_028150	72195.0	Mm.164187	NM_028150	ENSMUSG00000053134	Supt7l	2610524B01Rik|6030455L14Rik	suppressor of Ty 7-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69418990-4	chr11	69418878	69419078	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5303.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-96350239-4	chr9	96350148	96350348	+	860.616699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357213, intron 1 of 7)	intron (NM_001357213, intron 1 of 7)	13467.0	NM_001357213	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	2.33037057000446	3.12509147454118	1.62656468659635	2.10531838627789	1.87487149895884	2.25854787437242	2.64897138543461	2.24720331626624	-0.305114577769312	0.728421326945694	0.998431161219273
Merged-chr4-3080547-2	chr4	3080447	3080647	+	818.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-91536.0	NM_001167534	100312470.0	Mm.480297	NM_001167534	ENSMUSG00000115072	Vmn1r2	Gm11776	vomeronasal 1 receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-62661717-4	chr4	62661621	62661821	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134257, intron 10 of 15)	intron (NM_134257, intron 10 of 15)	-12253.0	NM_001310706	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83224007-1	chr11	83223907	83224107	+	624.0	f0_c57.idr	intron (NR_015519, intron 1 of 3)	intron (NR_015519, intron 1 of 3)	431.0	NR_015519	100043636.0	Mm.295569	NR_015519	ENSMUSG00000087107	AI662270	AW496474	expressed sequence AI662270	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99440380-1	chr7	99440280	99440480	+	583.0	f0_balb.idr	intron (NM_201352, intron 5 of 17)	intron (NM_201352, intron 5 of 17)	-25624.0	NM_028145	72184.0	Mm.153585	NM_028145	ENSMUSG00000035298	Klhl35	2810406K13Rik	kelch-like 35	protein-coding	-0.305772952063004	-0.290008499342266	-0.29515031241694	0.543957134682856	-0.304782698433178	-0.288852424800862	-0.294014381499874	0.27482828626817	-0.775048300321743	0.763985194168892	1
Merged-chr17-56885597-2	chr17	56885497	56885697	+	542.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030141, intron 12 of 13)	intron (NM_030141, intron 12 of 13)	9964.0	NM_030141	78625.0	Mm.160106	NM_030141	ENSMUSG00000024209	1700061G19Rik	1700026H02|AI507598	RIKEN cDNA 1700061G19 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-117817193-4	chr6	117817093	117817293	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23988.0	NM_001346649	232337.0	Mm.290847	NM_177684	ENSMUSG00000059689	Zfp637	AI646709|BC021601|Znf32	zinc finger protein 637	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-89819808-2	chr1	89819708	89819908	+	648.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037136, intron 12 of 16)	intron (NM_001037136, intron 12 of 16)	111368.0	NM_010262	14472.0	Mm.204730	NM_010262	ENSMUSG00000034486	Gbx2	D130058E05Rik|Gbx-2|MMoxA|Stra7	gastrulation brain homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-103361593-4	chr11	103361502	103361702	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205236, intron 2 of 17)	intron (NM_001205236, intron 2 of 17)	2090.0	NM_183288	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-108865321-4	chr3	108865206	108865406	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001165965, intron 8 of 11)	intron (NM_001165965, intron 8 of 11)	24702.0	NM_177091	320181.0	Mm.244233	NM_177091	ENSMUSG00000045326	Fndc7	E230011A21Rik	fibronectin type III domain containing 7	protein-coding	4.13621629380636	3.66783129737924	5.10231343939916	4.08667352127268	3.27677720377626	3.95946345617033	3.82866031520585	4.16234426945857	-0.70452525903724	0.150647826396812	0.602589676101411
Merged-chr12-55472272-2	chr12	55472172	55472372	+	972.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20375.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-7784770-2	chr9	7784670	7784870	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_049191)	TTS (NR_049191)	380.0	NR_049191	100885830.0		NR_049191	ENSMUSG00000093615	Mir5618	Gm23685|mmu-mir-5618	microRNA 5618	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101963959-6	chr11	101963874	101964074	+	960.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_024449, exon 2 of 2)	exon (NM_024449, exon 2 of 2)	3041.0	NM_024449	74499.0	Mm.265602	NM_024449	ENSMUSG00000001494	Sost	5430411E23Rik	sclerostin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-19563544-2	chr10	19563444	19563644	+	932.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28405.0	NM_010511	15979.0	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-93668939-4	chr1	93668849	93669049	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16626.0	NM_016778	51800.0	Mm.3295	NM_016778	ENSMUSG00000026278	Bok	matador|mtd	BCL2-related ovarian killer	protein-coding	1.56912913910292	0.831998348073797	1.21572682198221	1.99678747988385	1.58434619820253	1.43445353463676	0.819781985151766	0.806086817134563	-0.936292697729275	0.504988930611404	0.940939014262092
Merged-chr16-32099767-4	chr16	32099664	32099864	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025892)	promoter-TSS (NM_025892)	-37.0	NM_024464	72084.0	Mm.37613	NM_024464	ENSMUSG00000023791	Pigx	2010319C14Rik|PIG-X	phosphatidylinositol glycan anchor biosynthesis, class X	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-87613559-3	chr17	87613452	87613652	+	884.755554	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22427.0	NM_008532	17075.0	Mm.4259	NM_008532	ENSMUSG00000045394	Epcam	CD326|EGP|EGP-2|Egp314|Ep-CAM|EpCAM1|GA733-2|Ly74|TROP1|Tacsd1|Tacstd1|gp40	epithelial cell adhesion molecule	protein-coding	2.23899284031231	2.63811519823403	1.74416575821904	2.35914652311515	2.47387659234103	2.77232793910631	2.56945240372182	3.27097250497352	1.1122268918447	0.154968349614385	0.610178472914225
Merged-chr5-124482776-4	chr5	124482627	124482827	+	773.133301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029532)	promoter-TSS (NM_029532)	-428.0	NM_029532	76167.0	Mm.156035	NM_029532	ENSMUSG00000029402	Snrnp35	6330548G22Rik	small nuclear ribonucleoprotein 35 (U11/U12)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-44384650-4	chr19	44384555	44384755	+	966.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	23054.0	NM_009127	20249.0	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	1.5863581173916	1.60159901700265	1.38953122647228	1.52094211355847	2.07488776028914	2.22925354978349	2.06923033289332	1.52717099723722	1.59764189675945	0.121995222148721	0.547245267450283
Merged-chr12-102246204-5	chr12	102246144	102246344	+	900.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172152, intron 12 of 16)	intron (NM_172152, intron 12 of 16)	-36830.0	NM_177620	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-9276571-4	chr13	9276468	9276668	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081426)	promoter-TSS (NM_001081426)	43.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-143070390-2	chr7	143070284	143070484	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001115085, exon 3 of 3)	exon (NM_001115085, exon 3 of 3)	1016.0	NM_001115085	56844.0	Mm.139675	NM_020285	ENSMUSG00000045752	Tssc4	AA241958|ESTM671070	tumor-suppressing subchromosomal transferable fragment 4	protein-coding	1.2717128804497	1.14726640059784	2.43617677562809	1.66081884272231	1.93147028714367	1.78073454473941	2.20261126326094	1.66921257191675	0.434390348483532	0.690469059001205	0.996647510311426
Merged-chr15-78301001-3	chr15	78300924	78301124	+	857.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001287389, intron 1 of 11)	B4|SINE|B4	4697.0	NM_007781	12984.0	Mm.1940	NM_007781	ENSMUSG00000071714	Csf2rb2	AIC2A|BetaIl3|Bil3|Csfgmrb|Il3r|Il3rb|Il3rb2	colony stimulating factor 2 receptor, beta 2, low-affinity (granulocyte-macrophage)	protein-coding	4.0888159652466	3.62840252893679	2.97151736214171	3.77376906646814	3.78868373386353	4.27550765422869	2.07837047123258	4.02528834364559	0.118361876516643	0.846002574982974	0.998431161219273
Merged-chr12-104836405-4	chr12	104836316	104836516	+	962.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040682, intron 1 of 12)	Lx7|LINE|L1	28660.0	NR_104436	94040.0	Mm.244078	NM_053155	ENSMUSG00000021097	Clmn	9330188N17Rik|AI428889|AI788815|mKIAA1188	calmin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-87764503-2	chr11	87764428	87764628	+	968.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_172449, intron 5 of 31)	CpG-2413	3987.0	NM_172449	207777.0	Mm.342019	NM_172449	ENSMUSG00000034156	Tspoap1	Bzrap1|D230016K05|PRAX-1|mKIAA0612	TSPO associated protein 1	protein-coding	2.17784738079503	2.46559899978109	1.76930430910412	1.10846648507549	1.48269783071975	2.66360816234943	1.13774479418382	2.1178744635993	0.0385309205231913	0.97252978401808	0.998431161219273
Merged-chr1-91092617-4	chr1	91092505	91092705	+	989.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008515, intron 9 of 22)	intron (NM_008515, intron 9 of 22)	39161.0	NM_001310732	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-177714197-4	chr1	177714100	177714300	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-15614.0	NM_027077	69428.0	Mm.84467	NM_027077	ENSMUSG00000015962	1700016C15Rik	-	RIKEN cDNA 1700016C15 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100505243-4	chr7	100505159	100505359	+	892.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153527, intron 5 of 7)	intron (NM_153527, intron 5 of 7)	9556.0	NM_153527	69387.0	Mm.278554	NM_153527	ENSMUSG00000030708	Dnajb13	1700014P03Rik|Tsarg	DnaJ heat shock protein family (Hsp40) member B13	protein-coding	4.46994979173049	3.97183419572476	4.80493858402121	5.33857513043718	2.63413022016421	2.45110404588686	3.70514022374424	3.74484372809993	-1.99395629086399	0.000149465063433422	0.00427650675136932
Merged-chr18-82912274-4	chr18	82912169	82912369	+	992.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183033, intron 1 of 5)	intron (NM_183033, intron 1 of 5)	1390.0	NM_183033	329003.0	Mm.326526	NM_183033	ENSMUSG00000058881	Zfp516	C330029B10Rik|D230016L03|Zfp26l|Znf516|mKIAA0222	zinc finger protein 516	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-4191290-2	chr5	4191190	4191390	+	582.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1077.0	NM_001042670	208595.0	Mm.129815	NM_001042670	ENSMUSG00000053178	Mterf1b	Gm9897	mitochondrial transcription termination factor 1b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3904154-2	chr19	3904054	3904254	+	960.857178	f1_balb.idr|f1_c57bl6.idr	intron (NM_001136091, intron 3 of 19)	intron (NM_001136091, intron 3 of 19)	1076.0	NM_016921	27060.0	Mm.271689	NM_016921	ENSMUSG00000001750	Tcirg1	ATP6N1C|ATP6a3|Atp6i|OC-116|OPTB1|Stv1|TIRC7|Vph1|oc	T cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 protein A3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-54003731-4	chr17	54003624	54003824	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-13093.0	NM_018751	20888.0	Mm.10108	NM_018751	ENSMUSG00000023943	Sult1c1	(PST)G|P-SULT|ST1C1|Stp2|Sult1a2|mOLFST	sulfotransferase family, cytosolic, 1C, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-55970520-5	chr7	55970366	55970566	+	842.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015495, intron 1 of 5)	B1_Mus1|SINE|Alu	7935.0	NR_015495	320845.0	Mm.274484	NM_001033396		A230056P14Rik	-	RIKEN cDNA A230056P14 gene	ncRNA	1.50928112562829	1.27999272039952	0.926887220116444	1.18513695593705	1.94792276337071	2.67307640671913	3.36627793825286	0.902405554250857	3.16115333395862	0.00665367901935226	0.0821868643179703
Merged-chr1-95381214-4	chr1	95381111	95381311	+	960.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	UCON29|DNA|PiggyBac?	67583.0	NM_026321	67698.0	Mm.272705	NM_026321	ENSMUSG00000051185	Fam174a	2310044D20Rik|Fam174|Naa6|Tmem157	family with sequence similarity 174, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71597867-1	chr17	71597767	71597967	+	645.0	f1_balb.idr	intron (NR_027953, intron 1 of 2)	intron (NR_027953, intron 1 of 2)	414.0	NR_027953	68789.0	Mm.75202	NR_015549	ENSMUSG00000085492	Trmt61b	1110039F03Rik|623451|Gm6431	tRNA methyltransferase 61B	ncRNA	-1.09181015755574	-1.07127863322078	-1.08228658123665	-1.08871065290069	-0.717292667659083	-1.06889316496499	-0.759591785671599	-1.08838358103585	2.67668263353115	0.403877806619409	1
Merged-chr7-71876286-3	chr7	71876184	71876384	+	911.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33411.0	NR_130995	78156.0	Mm.243818	NR_130995	ENSMUSG00000108669	4930441H08Rik	-	RIKEN cDNA 4930441H08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-25834641-2	chr17	25834541	25834741	+	758.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_144816, exon 8 of 8)	3' UTR (NM_144816, exon 8 of 8)	-1280.0	NM_019719	56424.0	Mm.277599	NM_019719	ENSMUSG00000039615	Stub1	0610033N24Rik|2210017D18Rik|2310040B03Rik|AW046544|Chip	STIP1 homology and U-Box containing protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-96214067-4	chr10	96213964	96214164	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12143.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-90895900-2	chr5	90895800	90896000	+	972.375	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3C|LINE|L1	4655.0	NM_008176	14825.0	Mm.21013	NM_008176	ENSMUSG00000029380	Cxcl1	Fsp|Gro1|KC|Mgsa|N51|Scyb1|gro	chemokine (C-X-C motif) ligand 1	protein-coding	-1.06997269762433	-1.30473905204845	-1.3145270772132	-1.32256725251374	-1.06385251204029	-1.30261794616352	-1.3123112828633	-1.32112806497905	0.0394047164033882	0.991001358494878	1
Merged-chr5-99242616-4	chr5	99242537	99242737	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181318, intron 2 of 13)	intron (NM_181318, intron 2 of 13)	10290.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-100545341-3	chr9	100545236	100545436	+	820.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010878, intron 1 of 3)	intron (NM_010878, intron 1 of 3)	798.0	NM_010878	17973.0	Mm.181485	NM_010878	ENSMUSG00000032475	Nck1	6330586M15Rik|D230010O13Rik|Nck|Nck-1	non-catalytic region of tyrosine kinase adaptor protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-80847008-4	chr12	80846927	80847127	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178682, intron 2 of 5)	intron (NM_178682, intron 2 of 5)	56495.0	NM_001242419	217684.0	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-184027222-4	chr1	184027105	184027305	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	6793.0	NM_028516	73363.0	Mm.50115	NM_028516	ENSMUSG00000044854	1700056E22Rik	-	RIKEN cDNA 1700056E22 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-93073911-2	chr1	93073811	93074011	+	710.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001294150, intron 6 of 46)	intron (NM_001294150, intron 6 of 46)	8569.0	NM_001294150	16560.0	Mm.276408	NM_008440	ENSMUSG00000014602	Kif1a	ATSV|C630002N23Rik|Gm1626|Kns1	kinesin family member 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89214403-4	chr3	89214297	89214497	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013691)	promoter-TSS (NM_013691)	-62.0	NM_001357367	17827.0	Mm.280943	NM_013604	ENSMUSG00000064068	Mtx1	Gcap6|Mtx	metaxin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-55860159-2	chr4	55860059	55860259	+	585.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-327684.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-183635280-3	chr1	183635222	183635422	+	901.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-113655.0	NR_151520	102637191.0	Mm.417076	NR_151520	ENSMUSG00000103305	Gm34068	-	predicted gene, 34068	ncRNA	4.08620930829371	3.46679534845991	4.03035984986221	4.09786369067245	1.81211875288169	1.5077896115461	2.58508396348119	1.38150133683941	-3.67614981916078	1.38574359579656e-06	8.52554586688984e-05
Merged-chr8-4677917-4	chr8	4677822	4678022	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	64752.0	NM_145591	233987.0	Mm.102799	NM_145591	ENSMUSG00000058748	Zfp958	-	zinc finger protein 958	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-8762938-4	chr10	8762831	8763031	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 8 of 19)	intron (NM_175155, intron 8 of 19)	123139.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	6.29291840741664	5.92100193396695	6.31083206734035	5.8851957535815	6.02804607557031	5.42471466784348	5.93261463284112	5.56950613560777	-0.389026665299961	0.117714132764838	0.538510739036297
Merged-chr7-80081887-2	chr7	80081786	80081986	+	557.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001146000, exon 2 of 6)	exon (NM_001146000, exon 2 of 6)	-6629.0	NR_045695	100859962.0	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	0.103986627505465	0.0515523099621372	0.032300177067784	-0.130099728349125	0.109976680630106	-0.122216251969516	-0.126197119815253	0.359579119461066	0.54346918332138	0.79594000650189	1
Merged-chr17-88530047-4	chr17	88529936	88530136	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028658)	promoter-TSS (NM_028658)	-88.0	NM_028658	73825.0	Mm.271817	NM_028658	ENSMUSG00000034709	Ppp1r21	1110018J12Rik|AI426045|AW550781|Ccdc128|Klraq1	protein phosphatase 1, regulatory subunit 21	protein-coding	5.70404507480166	5.33983041136128	5.49560484939609	4.86187413415741	5.79496326786933	5.63327812362887	5.55976752826187	5.23967139549534	0.211144876000781	0.467011688008329	0.923458524683719
Merged-chr3-149393556-4	chr3	149393466	149393666	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	118829.0	NR_040591	381482.0	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34923930-2	chr17	34923830	34924030	+	687.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023557, intron 13 of 20)	intron (NM_023557, intron 13 of 20)	-7323.0	NM_010893	18010.0	Mm.8856	NM_010893	ENSMUSG00000007038	Neu1	AA407268|AA407316|Aglp|Apl|Bat-7|Bat7|G9|Map-2|Neu|Neu-1	neuraminidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-57268740-2	chr9	57268640	57268840	+	576.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6141.0	NM_028820	74211.0	Mm.428905	NM_028820	ENSMUSG00000032300	1700017B05Rik	AA682102|D9Ertd278e	RIKEN cDNA 1700017B05 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101971589-3	chr11	101971489	101971689	+	883.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028207, exon 3 of 3)	3' UTR (NM_028207, exon 3 of 3)	-4574.0	NM_024449	74499.0	Mm.265602	NM_024449	ENSMUSG00000001494	Sost	5430411E23Rik	sclerostin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-114700143-3	chr5	114700045	114700245	+	859.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER54A|LTR|ERVL	-7634.0	NM_029992	77832.0	Mm.239698	NM_029992	ENSMUSG00000002486	Tchp	A930031F18Rik|AV279199	trichoplein, keratin filament binding	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95003549-1	chr3	95003449	95003649	+	780.0	f1_balb.idr	promoter-TSS (NR_105980)	promoter-TSS (NR_105980)	-619.0	NR_105980	102465613.0		NR_105980	ENSMUSG00000099033	Mir7013	Gm27488|mmu-mir-7013	microRNA 7013	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-57888668-2	chr15	57888568	57888768	+	701.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_024207, intron 1 of 7)	intron (NM_024207, intron 1 of 7)	3750.0	NM_024207	67819.0	Mm.289387	NM_024207	ENSMUSG00000022365	Derl1	1110021N07Rik|AI195141|AW551338|Derlin-1	Der1-like domain family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-17028796-1	chr13	17028696	17028896	+	883.75	f0_balb.idr	intron (NM_138654, intron 12 of 13)	ORR1F|LTR|ERVL-MaLR	665969.0	NM_138654	192136.0	Mm.364180	NM_138654	ENSMUSG00000055137	Sugct	5033411D12Rik|D17907	succinyl-CoA glutarate-CoA transferase	protein-coding	0.590049869530369	0.742664659553855	0.150965839952957	0.146796753168304	0.279657350722885	0.344978472176942	0.32385096474159	0.305733881687149	-0.955982160042345	0.602139005652657	1
Merged-chr7-141900534-2	chr7	141900434	141900634	+	879.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347562, intron 1 of 6)	intron (NM_001347562, intron 1 of 6)	1927.0	NM_023764	54473.0	Mm.103551	NM_023764	ENSMUSG00000025139	Tollip	4930403G24Rik|4931428G15Rik	toll interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-80086709-2	chr9	80086578	80086778	+	637.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001311110, intron 1 of 23)	B1_Mm|SINE|Alu	19775.0	NM_146003	215351.0	Mm.28232	NM_146003	ENSMUSG00000034252	Senp6	2810017C20Rik|E130319N12Rik|Susp1|mKIAA0797	SUMO/sentrin specific peptidase 6	protein-coding	-0.056904223361343	0.0435180386850446	0.349865523718367	-0.313812785997229	-0.318420664098205	-0.305352065305288	-0.309612897204389	-0.313242584661003	-3.62746984308442	0.131253173383059	1
Merged-chr1-171816513-2	chr1	171816428	171816628	+	644.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23169.0	NM_001252472	12523.0	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	0.235837329543224	0.852998055611132	0.257272183196286	0.249310098107501	0.23786252593911	0.269697802172479	0.947292308192851	1.43477764816727	2.04925042114073	0.296391216716771	1
Merged-chr19-47464702-3	chr19	47464621	47464821	+	915.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164717)	promoter-TSS (NM_001164717)	-310.0	NM_008018	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-59981035-4	chr10	59980924	59981124	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21781.0	NM_026937	69090.0	Mm.155839	NM_026937	ENSMUSG00000044475	Ascc1	1810015P09Rik|AI550520|ASC1p50|CGI-18	activating signal cointegrator 1 complex subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-54561378-1	chr11	54561278	54561478	+	544.0	f1_balb.idr	exon (NM_175258, exon 5 of 28)	exon (NM_175258, exon 5 of 28)	-34768.0	NM_001252498	192786.0	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78582832-2	chr15	78582732	78582932	+	555.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1243.0	NR_155437	102640742.0	Mm.253544	NR_155437	ENSMUSG00000116097	Gm36738	-	predicted gene, 36738	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-112113867-3	chr12	112113758	112113958	+	751.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081169, intron 3 of 14)	intron (NM_001081169, intron 3 of 14)	-4549.0	NR_049197	100885836.0		NR_049197	ENSMUSG00000106228	Mir3073b	mir-3073b|mmu-mir-3073b	microRNA 3073b	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-87625469-4	chr1	87625388	87625588	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110192, intron 1 of 26)	L1MB7|LINE|L1	5176.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-108628484-3	chr5	108628421	108628621	+	725.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359923, intron 1 of 22)	intron (NM_001359923, intron 1 of 22)	1256.0	NM_001359924	231580.0	Mm.276647	NM_153569	ENSMUSG00000062234	Gak	D130045N16Rik	cyclin G associated kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-34606048-2	chr6	34605948	34606148	+	666.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347100, intron 1 of 13)	intron (NM_001347100, intron 1 of 13)	7544.0	NM_001347100	109624.0	Mm.308134	NM_145575	ENSMUSG00000029761	Cald1	4833423D12Rik|AI195384|AV071549|AW536160|C920027I18Rik	caldesmon 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-118976489-4	chr2	118976386	118976586	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	49989.0	NM_028117	72136.0	Mm.486238	NM_028117	ENSMUSG00000074916	Chst14	2600016L03Rik|D4ST-1|D4st1	carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 14	protein-coding	2.51658948773544	1.15538047876088	3.13359819891194	1.60286925503306	1.7065112262717	1.16486065612032	3.63255012612287	1.6129111363787	0.237632279297854	0.828035117077696	0.998431161219273
Merged-chr14-43925211-4	chr14	43925117	43925317	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPEY4_LTR|LTR|ERVK	-1849.0	NM_053112	93725.0	Mm.429087	NM_053112	ENSMUSG00000090166	Ear10	Raf2	eosinophil-associated, ribonuclease A family, member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-34912330-4	chr7	34912233	34912433	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008820)	promoter-TSS (NM_008820)	-74.0	NM_008820	18624.0	Mm.69751	NM_008820	ENSMUSG00000063931	Pepd	Pep-4|Pep4|dal	peptidase D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-142395165-4	chr7	142395050	142395250	+	891.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	-7280.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-163532178-3	chr2	163532069	163532269	+	789.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001312906, intron 1 of 10)	intron (NM_001312906, intron 1 of 10)	9552.0	NR_027970	68314.0	Mm.46190	NM_197983	ENSMUSG00000046840	Hnf4aos	0610008F07Rik	hepatic nuclear factor 4 alpha, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-43447001-4	chr1	43446915	43447115	+	847.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010879, intron 1 of 4)	intron (NM_010879, intron 1 of 4)	1264.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-4900312-4	chr7	4900204	4900404	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-14913.0	NM_170759	232816.0	Mm.27442	NM_170759	ENSMUSG00000074406	Zfp628	Zec|Znf628	zinc finger protein 628	protein-coding	1.38566125139881	1.27857097290521	1.827481181513	0.83651879471497	1.15064512773514	1.28821789228661	1.84397888741078	0.838550977333798	-0.157031452651076	0.906070987256472	0.998431161219273
Merged-chr10-7600807-4	chr10	7600713	7600913	+	980.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359742, intron 3 of 5)	intron (NM_001359742, intron 3 of 5)	11013.0	NM_001359743	237253.0	Mm.206759	NM_172784	ENSMUSG00000019796	Lrp11	1700034J19Rik|6330533B21|9830160H19Rik	low density lipoprotein receptor-related protein 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-20398581-3	chr13	20398487	20398687	+	972.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 15 of 21)	intron (NM_080288, intron 15 of 21)	-74403.0	NM_198093	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-19963904-4	chr11	19963810	19964010	+	984.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033523, intron 1 of 5)	intron (NM_033523, intron 1 of 5)	39468.0	NM_033523	114716.0	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-31074856-4	chr17	31074764	31074964	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009593, intron 2 of 14)	intron (NM_009593, intron 2 of 14)	17170.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	4.42649766981592	4.63386091456135	3.98876470070056	4.36807237633005	4.23591373584628	5.37859637445919	4.1642762205956	5.28762124979716	0.629388831400505	0.131288779363192	0.566755615783012
Merged-chr2-143991389-7	chr2	143991287	143991487	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133626, intron 1 of 2)	intron (NM_133626, intron 1 of 2)	19876.0	NM_133626	81910.0	Mm.13705	NM_024281	ENSMUSG00000027422	Rrbp1	1700087N07Rik|5730465C04Rik|ES/130|mKIAA1398|mRRp0|mRRp1.8|mRRp10|mRRp15a|mRRp15b|mRRp16.8|mRRp2|mRRp41|mRRp47|mRRp5.4|p180	ribosome binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27778034-4	chr17	27777875	27778075	+	913.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033279, intron 3 of 4)	intron (NM_001033279, intron 3 of 4)	42567.0	NM_001033279	224647.0	Mm.196577	NM_001033279	ENSMUSG00000056692	D17Wsu92e	AU020189|C030010A15|C80239	DNA segment, Chr 17, Wayne State University 92, expressed	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-95597019-4	chr1	95596916	95597116	+	847.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009183, intron 4 of 4)	Lx8b|LINE|L1	70578.0	NM_009183	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-177131688-4	chr1	177131568	177131768	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011785, intron 1 of 12)	intron (NM_011785, intron 1 of 12)	117099.0	NM_011785	23797.0	Mm.235194	NM_011785	ENSMUSG00000019699	Akt3	AI851531|D930002M15Rik|Nmf350	thymoma viral proto-oncogene 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-29489183-4	chr17	29489083	29489283	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1862.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-21691857-4	chr16	21691759	21691959	+	922.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001881, intron 1 of 1)	intron (NM_001001881, intron 1 of 1)	2806.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-4529512-2	chr7	4529412	4529612	+	673.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033548, intron 4 of 11)	intron (NM_001033548, intron 4 of 11)	2930.0	NM_001033548	436022.0	Mm.425359	NM_001033548	ENSMUSG00000055809	Dnaaf3	6030429G01Rik|b2b1739Clo	dynein, axonemal assembly factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-33041631-3	chr12	33041519	33041719	+	938.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024478, intron 15 of 19)	MIRb|SINE|MIR	51256.0	NM_001024478	68764.0	Mm.60083	NM_001024478	ENSMUSG00000035860	Cdhr3	1110049B09Rik|BB172694|Cdh28	cadherin-related family member 3	protein-coding	0.426256035228124	1.18909906689583	1.13067525356876	0.44192646502427	1.64581541449835	0.465568974158906	0.674869223636691	0.443551419584996	0.326130453951919	0.851485484186905	0.998431161219273
Merged-chr2-155033584-3	chr2	155033429	155033629	+	887.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015770, intron 1 of 3)	intron (NM_015770, intron 1 of 3)	19959.0	NM_015770	50518.0	Mm.315593	NM_015770	ENSMUSG00000027596	a	A<y>|ASIP|ASP|As	nonagouti	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-11067662-3	chr8	11067570	11067770	+	834.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59240.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-152671069-6	chr2	152670969	152671169	+	830.611084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010376, intron 1 of 11)	intron (NM_010376, intron 1 of 11)	1608.0	NM_001159552	14950.0	Mm.277327	NM_010376	ENSMUSG00000019188	H13	1200006O09Rik|4930443L17Rik|5031424B04Rik|AV020344|H-13|Hm13|PSL3|Spp	histocompatibility 13	protein-coding	1.45106463163832	1.08936994704589	0.695555619214692	1.36967190344547	1.20271270048146	0.708866576255421	0.697964146913358	1.27419587013466	-0.804033191133631	0.59552311594115	0.971139446851758
Merged-chr2-59975105-2	chr2	59975005	59975205	+	562.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001182, intron 6 of 35)	intron (NM_001001182, intron 6 of 35)	-92499.0	NM_028118	72137.0	Mm.288734	NM_028118	ENSMUSG00000026988	Wdsub1	1700048E19Rik|2610014F08Rik	WD repeat, SAM and U-box domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128097904-4	chr10	128097763	128097963	+	970.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054078, intron 2 of 29)	intron (NM_054078, intron 2 of 29)	5080.0	NM_054078	116848.0	Mm.252213	NM_054078	ENSMUSG00000040054	Baz2a	AA415431|C030005G16Rik|C78388|Tip5|Walp3|mKIAA0314	bromodomain adjacent to zinc finger domain, 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-4940046-4	chr13	4939946	4940146	+	991.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-330882.0	NM_018859	56043.0	Mm.251908	NM_018859	ENSMUSG00000045410	Akr1e1	1810061I10Rik|Akr1e2	aldo-keto reductase family 1, member E1	protein-coding	-1.22315906685268	-1.19557143632602	-1.20673282037136	-0.55836125556573	-1.22265483704505	-1.19315271784257	-1.20420612767407	-1.21425999345206	-2.67891099987134	0.437057736398543	1
Merged-chr2-104121640-1	chr2	104121540	104121740	+	642.0	f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-1129.0	NM_026634	68243.0	Mm.158191	NM_026634	ENSMUSG00000032671	A930018P22Rik	-	RIKEN cDNA A930018P22 gene	protein-coding	0.102706952628629	-0.596501933757626	-0.423306907540347	-0.438863077986143	-0.606623399002961	-0.595702575549087	-0.599263621677607	-0.602296896628973	-3.35477609704533	0.197568392841571	1
Merged-chr7-43276318-3	chr7	43276207	43276407	+	648.43335	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR31M|LTR|ERVK	36993.0	NM_001357812	69930.0	Mm.45367	NM_027264	ENSMUSG00000012640	Zfp715	2610041B18Rik|mszf15	zinc finger protein 715	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-106476221-4	chr9	106476116	106476316	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145619, intron 1 of 10)	intron (NM_145619, intron 1 of 10)	733.0	NM_001311150	235587.0	Mm.273659	NM_145619	ENSMUSG00000023249	Parp3	A930002C11Rik|AW990611|Adprt3|Adprtl3|PARP-3|pADPRT-3	poly (ADP-ribose) polymerase family, member 3	protein-coding	3.84712231772976	3.72165684479767	4.09865246316518	4.62161002036428	3.56568131036931	3.5553347548933	4.65706894942873	2.97683437014837	-0.388436638594851	0.462523917425091	0.921194606787634
Merged-chr6-115809076-4	chr6	115808960	115809160	+	999.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172086)	promoter-TSS (NM_172086)	-317.0	NM_172086	19951.0	Mm.104368	NM_172086	ENSMUSG00000057841	Rpl32	AU020185|rpL32-3A	ribosomal protein L32	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69999862-2	chr11	69999762	69999962	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007888)	promoter-TSS (NM_007888)	-764.0	NM_007888	13543.0	Mm.5114	NM_007888	ENSMUSG00000020888	Dvl2	-	dishevelled segment polarity protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-64296273-2	chr1	64296172	64296372	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-174883.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167476565-2	chr2	167476465	167476665	+	829.333374	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_130767, exon 14 of 14)	non-coding (NR_130767, exon 14 of 14)	-16080.0	NM_030743	81018.0	Mm.22225	NM_030743	ENSMUSG00000006418	Rnf114	1110008J21Rik|AI225886|AW549494|Zfp228|Zfp313|Znf228	ring finger protein 114	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-67579976-2	chr11	67579876	67580076	+	697.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008088, intron 1 of 13)	intron (NM_008088, intron 1 of 13)	-6524.0	NM_001109657	14457.0	Mm.40338	NM_008088	ENSMUSG00000033066	Gas7	AW124766|B230343A10Rik|Gas7-cb	growth arrest specific 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-152761247-2	chr3	152761147	152761347	+	694.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_025662, intron 9 of 10)	intron (NM_025662, intron 9 of 10)	47147.0	NM_025662	329777.0	Mm.331447	NM_025662	ENSMUSG00000039047	Pigk	3000001O05Rik|Gm38470|PIG-K	phosphatidylinositol glycan anchor biosynthesis, class K	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-90538080-3	chr6	90537996	90538196	+	897.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12697.0	NM_001356412	107747.0	Mm.30035	NM_027406	ENSMUSG00000030088	Aldh1l1	1810048F20Rik|FDH|Fthfd|Neut2	aldehyde dehydrogenase 1 family, member L1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-118066746-2	chr6	118066646	118066846	+	573.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001362103, intron 1 of 12)	intron (NM_001362103, intron 1 of 12)	361.0	NM_001362103	70727.0	Mm.87660	NM_027526	ENSMUSG00000030134	Rasgef1a	6330404M18Rik|AI835194	RasGEF domain family, member 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-108104597-4	chr11	108104506	108104706	+	882.962524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011101, intron 3 of 16)	MTD|LTR|ERVL-MaLR	107758.0	NR_106082	102465705.0		NR_106082	ENSMUSG00000098989	Mir7223	Gm28009|mmu-mir-7223	microRNA 7223	ncRNA	3.75905158640641	3.72874187835365	4.01025796031345	5.25440965834786	4.2797789005593	4.17923071450017	3.96822134336396	5.2516061910024	0.20804416036546	0.676546908515674	0.99440487726309
Merged-chr2-155516086-2	chr2	155515974	155516174	+	676.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1228.0	NM_144786	207182.0	Mm.41757	NM_144786	ENSMUSG00000027603	Ggt7	1110017C11Rik|6330563L03Rik|Ggtl3	gamma-glutamyltransferase 7	protein-coding	3.03562409750226	1.46820764974084	2.40388910439663	2.92452055973865	2.86920008510145	1.47747329330874	2.55006012492448	3.01404616227817	0.0131043906350065	0.988537891271472	0.998431161219273
Merged-chr2-93333626-4	chr2	93333548	93333748	+	903.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183180, intron 1 of 9)	CpG	839.0	NM_183180	241556.0	Mm.274159	NM_183180	ENSMUSG00000027217	Tspan18	2610042G18Rik|6720430O15|BB226562	tetraspanin 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-137766503-2	chr5	137766403	137766603	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029805, intron 5 of 5)	B3A|SINE|B2	-12401.0	NM_001356989	69871.0	Mm.276058	NM_027242	ENSMUSG00000029725	Ppp1r35	2010007H12Rik|2010011D20Rik|AL024004	protein phosphatase 1, regulatory subunit 35	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-35479681-2	chr9	35479593	35479793	+	688.333374	f0_balb.idr|f1_balb.idr	intron (NM_021339, intron 13 of 18)	intron (NM_021339, intron 13 of 18)	27617.0	NM_021339	57810.0	Mm.80509	NM_021339	ENSMUSG00000038119	Cdon	CDO|Cd0|Orcam	cell adhesion molecule-related/down-regulated by oncogenes	protein-coding	1.19480511575219	0.920234935886041	1.28766155308907	0.893236396106179	1.64309625710248	1.63718943330113	1.69348135183572	1.73550583405415	2.47110627822709	0.0554535432313378	0.346190407904546
Merged-chr14-20833787-2	chr14	20833687	20833887	+	673.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR40|LTR|ERVK	-2875.0	NM_008873	18792.0	Mm.4183	NM_008873	ENSMUSG00000021822	Plau	u-PA|uPA	plasminogen activator, urokinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-137285985-1	chr5	137285885	137286085	+	660.0	f1_balb.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	-2269.0	NM_009599	11423.0	Mm.255464	NM_009599	ENSMUSG00000023328	Ache	-	acetylcholinesterase	protein-coding	-0.151591052260365	-0.130940799197888	0.714739633291343	-0.142844897156857	-0.150282248982373	-0.12944136653855	0.729351554324659	-0.141931488452262	0.041083046276385	0.986412301813541	1
Merged-chr9-21299294-2	chr9	21299194	21299394	+	974.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_009678, exon 8 of 11)	exon (NM_009678, exon 8 of 11)	-8085.0	NM_009878	12581.0	Mm.29020	NM_009878	ENSMUSG00000096472	Cdkn2d	INK4d|p19|p19INK4d	cyclin dependent kinase inhibitor 2D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-103387263-1	chr14	103387163	103387363	+	630.0	f0_balb.idr	Intergenic	Intergenic	-40463.0	NM_207215	105689.0	Mm.6478	NM_207215	ENSMUSG00000033004	Mycbp2	AU023734|AW107953|AW546647|C130061D10Rik|Pam|Phr1|R75243	MYC binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-53144944-1	chr18	53144844	53145044	+	729.25	f0_c57.idr	Intergenic	B2_Mm2|SINE|B2	-31348.0	NM_001357463	67804.0	Mm.252171	NM_026386	ENSMUSG00000034484	Snx2	0610030A03Rik	sorting nexin 2	protein-coding	2.01620414344825	1.57842305186694	1.09336937120688	0.665081545341656	0.842513764742584	0.696489707255139	1.40316545393173	0.667254356375371	-1.91067240357401	0.19775245232802	0.6800976274694
Merged-chr15-98847160-2	chr15	98847060	98847260	+	575.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001033276, exon 37 of 55)	exon (NM_001033276, exon 37 of 55)	-15652.0	NM_016781	19082.0	Mm.6670	NM_016781	ENSMUSG00000067713	Prkag1	AA571379|BB036179|Prkaac	protein kinase, AMP-activated, gamma 1 non-catalytic subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-100836609-2	chr10	100836509	100836709	+	709.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-94974.0	NR_152765	102639396.0	Mm.404529	NR_152765		Gm35722	-	predicted gene, 35722	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-97129456-4	chr7	97129361	97129561	+	922.93335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162477, intron 1 of 9)	CT-rich|Low_complexity|Low_complexity	47710.0	NM_010248	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-51558526-4	chr6	51558435	51558635	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361577, intron 1 of 6)	intron (NM_001361577, intron 1 of 6)	13242.0	NM_001361577	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-83496102-3	chr15	83495997	83496197	+	784.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357953, intron 9 of 11)	intron (NM_001357953, intron 9 of 11)	14810.0	NM_178869	319953.0	Mm.235007	NM_178869	ENSMUSG00000022442	Ttll1	6330444E16Rik|AV014541	tubulin tyrosine ligase-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-108638553-2	chr12	108638453	108638653	+	892.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163396, intron 2 of 14)	intron (NM_001163396, intron 2 of 14)	2800.0	NM_001163396	14026.0	Mm.238841	NM_007965	ENSMUSG00000021262	Evl	AI528774|b2b2600Clo	Ena-vasodilator stimulated phosphoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-54592007-3	chr13	54591909	54592109	+	903.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001347512)	TTS (NM_001347512)	1778.0	NM_025933	67044.0	Mm.29353	NM_025933	ENSMUSG00000025868	Higd2a	2010110M21Rik|AA690237	HIG1 domain family, member 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-32336104-4	chr17	32335983	32336183	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017476, intron 6 of 13)	intron (NM_017476, intron 6 of 13)	14494.0	NM_017476	54194.0	Mm.281005	NM_017476	ENSMUSG00000002625	Akap8l	HAP95|Nakap95	A kinase (PRKA) anchor protein 8-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-111743753-5	chr8	111743633	111743833	+	816.349976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_009954, exon 1 of 7)	5' UTR (NM_009954, exon 1 of 7)	116.0	NM_009954	12927.0	Mm.3758	NM_009954	ENSMUSG00000031955	Bcar1	AI385681|Cas|Crkas	breast cancer anti-estrogen resistance 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-107893738-3	chr13	107893723	107893923	+	863.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3759.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-37144415-2	chr9	37144315	37144515	+	547.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001029838, intron 1 of 12)	intron (NM_001029838, intron 1 of 12)	2907.0	NM_148950	208076.0	Mm.260335	NM_148950	ENSMUSG00000035934	Pknox2	D230005H23Rik|Prep2	Pbx/knotted 1 homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98707808-2	chr11	98707708	98707908	+	642.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361995, intron 19 of 25)	intron (NM_001361995, intron 19 of 25)	6495.0	NM_009971	12985.0	Mm.1238	NM_009971	ENSMUSG00000038067	Csf3	Csfg|G-CSF|MGI-IG	colony stimulating factor 3 (granulocyte)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-120833320-4	chr7	120833234	120833434	+	906.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-9497.0	NM_007908	13631.0	Mm.25997	NM_007908	ENSMUSG00000035064	Eef2k	C86191|eEF-2K	eukaryotic elongation factor-2 kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-55257306-4	chr9	55257199	55257399	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_032002, intron 3 of 7)	intron (NM_032002, intron 3 of 7)	26326.0	NM_032002	83961.0	Mm.443874	NM_032002	ENSMUSG00000032311	Nrg4	AI552600	neuregulin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153161771-1	chr2	153161671	153161871	+	1000.0	f0_balb.idr	intron (NM_133847, intron 1 of 17)	intron (NM_133847, intron 1 of 17)	470.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-85370461-2	chr6	85370361	85370561	+	624.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001003955, intron 1 of 5)	intron (NM_001003955, intron 1 of 5)	4173.0	NM_177466	52055.0	Mm.220334	NM_177466	ENSMUSG00000051343	Rab11fip5	9130206P09Rik|C75969|D6Ertd32e|GAF1|RIP11	RAB11 family interacting protein 5 (class I)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-94186831-4	chr8	94186729	94186929	+	838.854187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7740.0	NM_013602	17748.0	Mm.192991	NM_013602	ENSMUSG00000031765	Mt1	MT-I|Mt-1	metallothionein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-85319375-2	chr9	85319275	85319475	+	614.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(ATGTG)n|Simple_repeat|Simple_repeat	7749.0	NM_001160378	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-54503748-4	chr13	54503624	54503824	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_176987)	promoter-TSS (NM_176987)	-81.0	NM_176987	319719.0	Mm.376151	NM_176987	ENSMUSG00000043183	Simc1	4732471D19Rik	SUMO-interacting motifs containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-57396441-4	chr16	57396355	57396555	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	43178.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-165731700-4	chr1	165731582	165731782	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23588.0	NM_178593	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-96576723-1	chr12	96576623	96576823	+	622.0	f1_c57bl6.idr	Intergenic	RLTR9E|LTR|ERVK	-529501.0	NR_103800	69423.0	Mm.46121	NM_027076		1700019M22Rik	-	NFX-like protein	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-33939414-2	chr14	33939314	33939514	+	914.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1625.0	NM_019506	12165.0	Mm.422844	NM_019506	ENSMUSG00000072625	Gdf2	Bmp9	growth differentiation factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46733507-2	chr8	46733407	46733607	+	734.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_045750, intron 2 of 2)	intron (NR_045750, intron 2 of 2)	6008.0	NR_045750	100503498.0	Mm.187358	NR_045750	ENSMUSG00000097534	Gm16675	-	predicted gene, 16675	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-89579600-2	chr6	89579500	89579700	+	616.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001167736, intron 1 of 6)	intron (NM_001167736, intron 1 of 6)	16052.0	NM_025351	66098.0	Mm.20313	NM_025351	ENSMUSG00000030086	Chchd6	0710001P09Rik|1700021B03Rik	coiled-coil-helix-coiled-coil-helix domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-65604990-4	chr4	65604852	65605052	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161782)	promoter-TSS (NM_001161782)	-34.0	NM_053084	69807.0	Mm.22786	NM_053084	ENSMUSG00000051675	Trim32	1810045E12Rik|3f3|BBS11|Zfp117	tripartite motif-containing 32	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-148395861-1	chr2	148395761	148395961	+	569.0	f0_balb.idr	exon (NM_009219, exon 1 of 1)	exon (NM_009219, exon 1 of 1)	484.0	NM_009219	20608.0	Mm.35324	NM_009219	ENSMUSG00000037014	Sstr4	Smstr4|sst4	somatostatin receptor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-102240218-4	chr13	102240092	102240292	+	887.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-453355.0	NM_001360519	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	3.07239256090201	1.97147250286899	4.13440836988378	3.24483930769734	3.09919156316011	1.98816118042328	4.16396764791522	3.26203109368762	0.0382257450469509	0.95916796619604	0.998431161219273
Merged-chr5-121713399-2	chr5	121713299	121713499	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009125, intron 1 of 24)	intron (NM_009125, intron 1 of 24)	1790.0	NM_009125	20239.0	Mm.260900	NM_009125	ENSMUSG00000042605	Atxn2	9630045M23Rik|ATX2|AW544490|Sca2	ataxin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-33271946-3	chr8	33271854	33272054	+	863.861145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011721, intron 23 of 33)	intron (NM_011721, intron 23 of 33)	113573.0	NM_001122822	22427.0	Mm.228805	NM_011721	ENSMUSG00000031583	Wrn	AI846146	Werner syndrome RecQ like helicase	protein-coding	2.42966618406421	2.5158178071288	1.35967815269203	2.81327399268828	2.45031801354143	2.53482975858192	1.36795089581046	2.82783657517824	0.0354350427476207	0.970605410253449	0.998431161219273
Merged-chr14-110531145-2	chr14	110531045	110531245	+	683.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4A|LINE|L1	224004.0	NM_175499	239250.0	Mm.49728	NM_175499	ENSMUSG00000045871	Slitrk6	4832410J21Rik|Sltk6	SLIT and NTRK-like family, member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-54328790-2	chr6	54328690	54328890	+	660.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030024, intron 1 of 1)	intron (NM_030024, intron 1 of 1)	1778.0	NM_030024	78004.0	Mm.41984	NM_030024	ENSMUSG00000045725	Prr15	E130201N16Rik|G90	proline rich 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152934128-3	chr1	152934042	152934242	+	805.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-20959.0	NM_175460	226518.0	Mm.40548	NM_175460	ENSMUSG00000042751	Nmnat2	AI843915|D030041I09Rik|PNAT1|PNAT2	nicotinamide nucleotide adenylyltransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-122991383-4	chr4	122991263	122991463	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	HAL1|LINE|L1	-4568.0	NM_001303121	16918.0	Mm.1055	NM_008506	ENSMUSG00000028654	Mycl	AW536278|L-myc|Lmyc-1|Lmyc1|Mycl1|bHLHe38	v-myc avian myelocytomatosis viral oncogene lung carcinoma derived	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-4391970-4	chr10	4391843	4392043	+	862.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3835.0	NM_001033466	381990.0	Mm.262466	NM_001033466	ENSMUSG00000075327	Zbtb2	Gm1103	zinc finger and BTB domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-50905465-3	chr14	50905357	50905557	+	772.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12202.0	NM_001166651	546611.0	Mm.390692	NM_001166651	ENSMUSG00000090799	Klhl33	EG546611	kelch-like 33	protein-coding	0.403492753362774	0.268402759661699	0.880067573573057	0.253932458931249	0.244906786576177	0.270227756872541	1.19111367704845	0.727845782107441	1.06949502953282	0.572997399556628	1
Merged-chr9-123856479-2	chr9	123856379	123856579	+	706.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_011798, exon 2 of 2)	exon (NM_011798, exon 2 of 2)	-4580.0	NM_001110253	17281.0	Mm.252941	NM_148925	ENSMUSG00000025241	Fyco1	2810409M01Rik|Mem2|RUFY3|ZFYVE7	FYVE and coiled-coil domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-30576413-4	chr17	30576316	30576516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027060)	promoter-TSS (NM_027060)	-129.0	NM_027060	224671.0	Mm.41220	NM_027060	ENSMUSG00000062202	Btbd9	1700023F20Rik|4930402L05|AI464421	BTB (POZ) domain containing 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98777455-4	chr11	98777348	98777548	+	878.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2071.0	NM_145434	217166.0	Mm.390397	NM_145434	ENSMUSG00000020889	Nr1d1	A530070C09Rik|R75201	nuclear receptor subfamily 1, group D, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-33322822-2	chr14	33322722	33322922	+	798.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_153800, intron 4 of 10)	intron (NM_153800, intron 4 of 10)	88202.0	NM_001310452	26419.0	Mm.21495	NM_016700	ENSMUSG00000021936	Mapk8	AI849689|JNK|JNK1|Prkm8|SAPK1	mitogen-activated protein kinase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-18879162-2	chr16	18879062	18879262	+	691.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010435, intron 1 of 24)	intron (NM_010435, intron 1 of 24)	2412.0	NM_010435	15260.0	Mm.15694	NM_010435	ENSMUSG00000022702	Hira	AA138857|D16Ertd95e|Gm15797|N28177|Tuple1	histone cell cycle regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-19622103-4	chr9	19622014	19622214	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172918)	promoter-TSS (NM_172918)	23.0	NR_153375	244713.0	Mm.67366	NM_172918	ENSMUSG00000057551	Zfp317	4932416G03|D230022C05Rik|KRAB9|Zfp67|Zfp75|mszf40	zinc finger protein 317	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-172305401-1	chr1	172305301	172305501	+	713.0	f0_balb.idr	Intergenic	Intergenic	-6966.0	NM_080419	140559.0	Mm.271717	NM_080419	ENSMUSG00000038034	Igsf8	ESTM34|EWI-2|KCT-4|PGRL	immunoglobulin superfamily, member 8	protein-coding	1.26764447011359	2.00803579855145	1.52793619782986	1.98628160327342	1.57183269796469	2.23781907334528	1.5386319779886	1.64623819667264	0.141602695995243	0.893023422734845	0.998431161219273
Merged-chr9-58276220-6	chr9	58276137	58276337	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	23073.0	NM_026942	69106.0	Mm.216502	NM_026942	ENSMUSG00000032333	Stoml1	1810015E19Rik|AI847431|SLP1|STORP|UNC24|WPB72	stomatin-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-21793495-4	chr16	21793409	21793609	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_037957)	promoter-TSS (NR_037957)	-838.0	NR_037958	100043489.0	Mm.326535	NR_037957	ENSMUSG00000097290	1300002E11Rik	1500026P21Rik	RIKEN cDNA 1300002E11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34296849-3	chr17	34296756	34296956	+	920.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9011.0	NM_010382	14969.0	Mm.22564	NM_010382	ENSMUSG00000060586	H2-Eb1	Eb|H-2Eb|H2Eb|Ia-4|Ia4	histocompatibility 2, class II antigen E beta	protein-coding	4.33087001476291	5.09839176452272	4.52690732313558	4.8965486726677	4.01401709769473	4.36074810178167	5.15198276090599	3.63903266472963	-0.417457588534258	0.332599241981227	0.833345452772687
Merged-chr4-53109837-1	chr4	53109737	53109937	+	621.5	f1_c57bl6.idr	intron (NM_013454, intron 5 of 49)	MER5A|DNA|hAT-Charlie	50058.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	-0.867192004373006	-0.853178049867322	-0.857829183672456	0.175105548543967	-0.866307924685362	-0.85201738026348	-0.856843285303794	-0.860697015180688	-3.81510527957311	0.172414890274837	1
Merged-chr4-45487952-4	chr4	45487839	45488039	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033306, intron 2 of 5)	intron (NM_001033306, intron 2 of 5)	42889.0	NM_001033306	230126.0	Mm.251716	NM_001033306	ENSMUSG00000044813	Shb	BC028832	src homology 2 domain-containing transforming protein B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-11134713-4	chr16	11134592	11134792	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029582)	promoter-TSS (NM_029582)	-160.0	NM_029582	106200.0	Mm.291015	NM_029582	ENSMUSG00000022498	Txndc11	2810408E11Rik|AI427833|EFP1|Txdc11	thioredoxin domain containing 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-77761205-2	chr15	77761105	77761305	+	887.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_022410, exon 41 of 41)	3' UTR (NM_022410, exon 41 of 41)	-4195.0	NM_001357895	239552.0	Mm.125650	NM_001081970	ENSMUSG00000056656	Apol8	9830006J20Rik|APOL-II|Apol2	apolipoprotein L 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-123480744-4	chr9	123480647	123480847	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013860, intron 1 of 7)	intron (NM_013860, intron 1 of 7)	2046.0	NM_013860	29806.0	Mm.10987	NM_013860	ENSMUSG00000025239	Limd1	AW822033|D9Ertd192e	LIM domains containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-79714711-1	chr11	79714611	79714811	+	1000.0	f1_balb.idr	Intergenic	Intergenic	2742.0	NR_029579	387188.0		NR_029579	ENSMUSG00000065395	Mir193a	Mir193|Mirn193|mir-193a|mmu-mir-193|mmu-mir-193a	microRNA 193a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-87637678-4	chr1	87637569	87637769	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110192, intron 2 of 26)	MLT1M|LTR|ERVL-MaLR	17357.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-68521568-4	chr11	68521472	68521672	+	974.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004435, intron 2 of 19)	intron (NM_001004435, intron 2 of 19)	18553.0	NR_126154	104709.0	Mm.234573	NM_001004435	ENSMUSG00000046207	Pik3r6	BB220380|p84|p84 PIKAP|p87(PIKAP)|p87PIKAP	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-98086856-2	chr6	98086756	98086956	+	552.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	95073.0	NM_008601	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-20901636-3	chr9	20901523	20901723	+	908.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3033.0	NM_016876	53356.0	Mm.427309	NM_016876	ENSMUSG00000070319	Eif3g	44kDa|D0Jmb4|Eif3s4|TU-189B2|eIF3-p44|p44	eukaryotic translation initiation factor 3, subunit G	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-126496464-4	chr2	126496350	126496550	+	885.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359975, intron 1 of 27)	intron (NM_001359975, intron 1 of 27)	3397.0	NM_001359975	241633.0	Mm.222235	NM_001080944	ENSMUSG00000060131	Atp8b4	Im	ATPase, class I, type 8B, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19269121-1	chr7	19269021	19269221	+	785.0	f0_c57.idr	intron (NM_009499, intron 1 of 12)	MIR|SINE|MIR	2733.0	NM_001282021	22323.0	Mm.9684	NM_009499	ENSMUSG00000030403	Vasp	-	vasodilator-stimulated phosphoprotein	protein-coding	0.718149293051614	1.48115164770126	1.20586865641699	1.04398206821918	1.19512735082599	0.589588234173619	0.578966214780614	0.569801031144908	-1.77375005202113	0.265842214271034	0.768695747145856
Merged-chr3-28026341-4	chr3	28026224	28026424	+	693.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008875, intron 3 of 25)	RMER10A|LTR|ERVL	42153.0	NM_008875	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65022189-2	chr9	65022089	65022289	+	976.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021345)	promoter-TSS (NM_021345)	-472.0	NM_021345	57874.0	Mm.308180	NM_021345	ENSMUSG00000033629	Hacd3	4930523M17Rik|AW742319|B-ind1|Hcad3|Hspc121|Ptplad1	3-hydroxyacyl-CoA dehydratase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105634730-2	chr8	105634630	105634830	+	714.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_151742, intron 1 of 1)	(TG)n|Simple_repeat|Simple_repeat	-1808.0	NM_181322	13018.0	Mm.269474	NM_181322	ENSMUSG00000005698	Ctcf	AW108038	CCCTC-binding factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122502994-4	chr5	122502906	122503106	+	914.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009722)	promoter-TSS (NM_009722)	-781.0	NR_027838	11938.0	Mm.227583	NM_009722	ENSMUSG00000029467	Atp2a2	9530097L16Rik|D5Wsu150e|SERCA2|SERCA2B|Serca2a|mKIAA4195	ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-30727716-1	chr16	30727616	30727816	+	592.0	f0_balb.idr	Intergenic	Lx7|LINE|L1	127993.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	1.18235796761478	1.80260425756644	0.814978893285127	1.36138317012042	0.797152025329089	0.826775472824703	1.29571721781534	1.36902568829802	-1.12874280386807	0.439587457729168	0.909130714404946
Merged-chr3-27938587-4	chr3	27938512	27938712	+	777.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164056)	promoter-TSS (NM_001164056)	-68.0	NM_001164056	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-50302216-2	chr6	50302116	50302316	+	635.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027881, intron 19 of 21)	intron (NM_027881, intron 19 of 21)	-40447.0	NM_018769	54722.0	Mm.248361	NM_018769	ENSMUSG00000029821	Gsdme	2310037D07Rik|4932441K13Rik|Dfna5|Dfna5h|EG14210|Fin15	gasdermin E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-26472511-4	chr2	26472400	26472600	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008714, intron 18 of 33)	L4_C_Mam|LINE|RTE-X	-2381.0	NR_105962	102465602.0		NR_105962	ENSMUSG00000098548	Mir6996	Gm27531|mmu-mir-6996	microRNA 6996	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-21009704-4	chr11	21009588	21009788	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-81636.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	2.45112953636849	3.25510200892773	1.92046786004948	3.38498318348382	3.23968064283642	3.06116153665878	4.08288388977599	3.32729749393789	0.997434704515841	0.139040676870035	0.582475573005127
Merged-chr12-76765650-4	chr12	76765548	76765748	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_154884, intron 1 of 2)	CpG	110.0	NM_206534	211151.0	Mm.80970	NM_206534	ENSMUSG00000090258	Churc1	1700030P15Rik|My015|chch	churchill domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19426312-2	chr7	19426212	19426412	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_172279, exon 17 of 17)	exon (NM_172279, exon 17 of 17)	-4895.0	NR_073015	100503495.0	Mm.410762	NR_073014	ENSMUSG00000040705	A930016O22Rik	-	RIKEN cDNA A930016O22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-121572054-4	chr9	121571956	121572156	+	854.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14964.0	NR_040740	75384.0	Mm.445955	NR_040740	ENSMUSG00000084995	Lyzl4os	4930589B17Rik|4930596M17Rik	lysozyme-like 4, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-8839760-1	chr10	8839660	8839860	+	842.5	f1_c57bl6.idr	intron (NM_175155, intron 2 of 19)	RSINE1|SINE|B4	46310.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	-0.651980856463372	-0.890416768689586	-0.897323658137576	-0.899291817901604	-0.54136577911218	-0.706997389899893	-0.896759410058493	-0.898948619133465	1.02294153341221	0.727143502332074	1
Merged-chr13-23911519-3	chr13	23911420	23911620	+	936.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177016, intron 1 of 11)	Lx8b|LINE|L1	3487.0	NM_177016	319848.0	Mm.97959	NM_177016	ENSMUSG00000021336	Slc17a4	9130214H05Rik	solute carrier family 17 (sodium phosphate), member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-75863936-4	chr14	75863818	75864018	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15995.0	NR_028481	100303751.0	Mm.484707	NR_028481	ENSMUSG00000065147	Snora31	MBI-161	small nucleolar RNA, H/ACA box 31	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-127605414-2	chr5	127605314	127605514	+	677.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133895, intron 2 of 7)	intron (NM_133895, intron 2 of 7)	11978.0	NM_133895	100561.0	Mm.28506	NM_133895	ENSMUSG00000029416	Slc15a4	AA987064|AW742963|C130069N12Rik|PHT1|PTR4	solute carrier family 15, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-131530735-4	chr2	131530643	131530843	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	31542.0	NM_013460	11550.0	Mm.389380	NM_013460	ENSMUSG00000027335	Adra1d	Adra-1|Adra1|Adra1a|Gpcr8|Spr8|[a]1d|alpha1D-AR	adrenergic receptor, alpha 1d	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70600745-6	chr8	70600582	70600782	+	949.4249880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133772, intron 4 of 16)	intron (NM_133772, intron 4 of 16)	6201.0	NM_023627	71780.0	Mm.29357	NM_023627	ENSMUSG00000019139	Isyna1	1300017C10Rik|AU018670	myo-inositol 1-phosphate synthase A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-33935783-5	chr13	33935709	33935909	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040707)	promoter-TSS (NR_040707)	-223.0	NR_040707	68808.0	Mm.443347	NR_040707	ENSMUSG00000085457	1110046J04Rik	-	RIKEN cDNA 1110046J04 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-90362918-3	chr7	90362830	90363030	+	661.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040085, intron 4 of 18)	intron (NM_001040085, intron 4 of 18)	-24051.0	NM_001040087	83671.0	Mm.26751	NM_031394	ENSMUSG00000030616	Sytl2	AI266830|Slp2|mKIAA1597	synaptotagmin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-64162654-3	chr13	64162590	64162790	+	791.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019986, intron 1 of 7)	intron (NM_019986, intron 1 of 7)	824.0	NM_019986	56541.0	Mm.40989	NM_019986	ENSMUSG00000021476	Habp4	4933413D03Rik|4933428J01Rik	hyaluronic acid binding protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-35973392-2	chr1	35973292	35973492	+	721.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-95008.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-83711113-1	chr2	83711013	83711213	+	918.0	f0_balb.idr	Intergenic	MTD|LTR|ERVL-MaLR	-13284.0	NM_008402	16410.0	Mm.227	NM_008402	ENSMUSG00000027087	Itgav	1110004F14Rik|2610028E01Rik|CD51|D430040G12Rik	integrin alpha V	protein-coding	1.17231131853219	0.851589027504468	1.9502516084887	0.813069053592616	0.787997188102749	2.05002590892148	2.23335501908764	1.24951144713226	1.24328588934842	0.359796491168955	0.856306289008338
Merged-chr1-180387678-4	chr1	180387608	180387808	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081175, intron 2 of 7)	intron (NM_001081175, intron 2 of 7)	-57159.0	NR_003623	277333.0	Mm.389223	NM_199472		Gm5069	EG277333	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46483129-4	chr19	46483041	46483241	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025391, intron 10 of 11)	intron (NM_001025391, intron 10 of 11)	-18507.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-19186449-4	chr10	19186345	19186545	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038022, intron 1 of 1)	intron (NR_038022, intron 1 of 1)	19207.0	NR_038022	100504265.0	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-131063876-1	chr2	131063776	131063976	+	614.0	f1_balb.idr	promoter-TSS (NM_001163529)	promoter-TSS (NM_001163529)	-62.0	NM_001163529	110751.0	Mm.108550	NM_033615	ENSMUSG00000027318	Adam33	Adaml	a disintegrin and metallopeptidase domain 33	protein-coding	0.388213048177354	0.864686181466545	0.561367080085587	0.395502531490455	0.744164710796784	1.07739406064728	0.401204863853287	0.680662972040737	1.23474225222868	0.48345708418057	1
Merged-chr16-32200683-3	chr16	32200533	32200733	+	718.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20833.0	NM_001033539	328660.0	Mm.441006	NM_001033539	ENSMUSG00000075269	Bex6	B020003O03Rik	brain expressed family member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165889012-4	chr2	165888928	165889128	+	915.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(GA)n|Simple_repeat|Simple_repeat	-4190.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	0.327266067825964	1.10099839391339	0.819891423141707	0.896049068821104	0.73266550916366	0.352877466201819	0.345077122973206	0.338387516201292	-2.28312110165725	0.225881187067217	1
Merged-chr12-8637143-4	chr12	8637034	8637234	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37000.0	NM_001160221	80913.0	Mm.341243	NM_030723	ENSMUSG00000020594	Pum2	5730503J23Rik|Pumm2	pumilio RNA-binding family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-113600141-4	chr13	113600024	113600224	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130796, intron 1 of 1)	intron (NM_130796, intron 1 of 1)	18440.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-143072148-2	chr7	143072024	143072224	+	919.833374	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_020277, exon 25 of 25)	3' UTR (NM_020277, exon 25 of 25)	2756.0	NM_001115085	56844.0	Mm.139675	NM_020285	ENSMUSG00000045752	Tssc4	AA241958|ESTM671070	tumor-suppressing subchromosomal transferable fragment 4	protein-coding	-1.50853547051926	-1.31539791179768	-1.48513758460844	-1.4934693947842	-1.50618095824544	-1.1536032543236	-1.48284141851482	-1.49197800474628	0.918985020934121	0.788442843202987	1
Merged-chr13-30582731-4	chr13	30582622	30582822	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32321.0	NR_045975	75090.0	Mm.292232	NR_045975	ENSMUSG00000086263	4930519D14Rik	-	RIKEN cDNA 4930519D14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-66851225-5	chr10	66851127	66851327	+	779.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	69157.0	NR_138560	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-33202339-4	chr14	33202251	33202451	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14472.0	NM_153800	239027.0	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-118132798-4	chr14	118132688	118132888	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029578)	promoter-TSS (NM_029578)	-23.0	NM_029578	76355.0	Mm.251537	NM_029578	ENSMUSG00000022130	Tgds	2610017J16Rik|2610025M23Rik|AI648925	TDP-glucose 4,6-dehydratase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-96213120-1	chr7	96213020	96213220	+	582.0	f0_balb.idr	intron (NM_001310760, intron 1 of 32)	intron (NM_001310760, intron 1 of 32)	1449.0	NM_001310760	23966.0	Mm.254610	NM_011858	ENSMUSG00000048078	Tenm4	Doc4|ELM2|Odz4|R75022|Ten-m4|l(7)-3Rn|l7Rn3|mKIAA1302	teneurin transmembrane protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-134793103-2	chr4	134793003	134793203	+	703.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-25099.0	NM_145554	100017.0	Mm.27486	NM_145554	ENSMUSG00000037295	Ldlrap1	AA691260|ARH2|Arh|Arh1|FHCB1|FHCB2	low density lipoprotein receptor adaptor protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-11496886-4	chr2	11496778	11496978	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177758, intron 1 of 14)	MTEb|LTR|ERVL-MaLR	5212.0	NM_001177754	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-7121039-4	chr7	7120930	7121130	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172738, intron 1 of 4)	intron (NM_172738, intron 1 of 4)	446.0	NM_172738	232853.0	Mm.23838	NM_172738	ENSMUSG00000062116	Zfp954	5730403M16Rik|8030437F07|AA123315	zinc finger protein 954	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10940586-3	chr19	10940494	10940694	+	787.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_023731)	TTS (NM_023731)	3434.0	NM_009962	14764.0	Mm.470721	NM_009962	ENSMUSG00000034117	Ptgdr2	Crth2|Gpr44|Grp45	prostaglandin D2 receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-118232706-3	chr7	118232552	118232752	+	614.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001031814, intron 1 of 62)	intron (NM_001031814, intron 1 of 62)	10985.0	NM_001031814	233789.0	Mm.309053	NM_177180	ENSMUSG00000030655	Smg1	2610207I05Rik|5430435M13Rik|C130002K18Rik|mKIAA0421	SMG1 homolog, phosphatidylinositol 3-kinase-related kinase (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-85811374-4	chr11	85811306	85811506	+	905.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_077059, intron 1 of 4)	intron (NR_077059, intron 1 of 4)	20982.0	NR_077059	69909.0	Mm.440214	NR_077059	ENSMUSG00000087013	2610027K06Rik	-	RIKEN cDNA 2610027K06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-73612933-2	chr15	73612833	73613033	+	937.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033219, intron 1 of 7)	intron (NM_001033219, intron 1 of 7)	4391.0	NM_001357747	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-50291612-4	chr11	50291488	50291688	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175334, intron 1 of 4)	intron (NM_175334, intron 1 of 4)	748.0	NM_175334	103806.0	Mm.51116	NM_175334	ENSMUSG00000050567	Maml1	AI644666|AW743257|D930008C07Rik|Mam-1|Mam1|mKIAA0200	mastermind like transcriptional coactivator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-62616874-2	chr8	62616774	62616974	+	561.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	-334358.0	NM_001252620	72902.0	Mm.334552	NM_023689	ENSMUSG00000054162	Spock3	2900045C01Rik|AI428471|mKIAA4039	sparc/osteonectin, cwcv and kazal-like domains proteoglycan 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-111570643-3	chr8	111570542	111570742	+	901.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168623, intron 1 of 4)	L1MEd|LINE|L1	32299.0	NM_001168623	170737.0	Mm.271578	NM_133206	ENSMUSG00000033545	Znrf1	B830022L21Rik|Rnf42|Zrfp1|nin283	zinc and ring finger 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-86661916-2	chr9	86661816	86662016	+	780.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008615, intron 3 of 13)	B3A|SINE|B2	25361.0	NM_001198933	17436.0	Mm.148155	NM_008615	ENSMUSG00000032418	Me1	D9Ertd267e|Mdh-1|Mod-1|Mod1	malic enzyme 1, NADP(+)-dependent, cytosolic	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-21995692-3	chr14	21995593	21995793	+	872.64447	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-6092.0	NM_145459	218820.0	Mm.292401	NM_145459	ENSMUSG00000039081	Zfp503	AI181838|B830002A16Rik|Nolz-1|Nolz1|Znf503	zinc finger protein 503	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-75684424-2	chr7	75684324	75684524	+	727.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 12 of 36)	intron (NM_029332, intron 12 of 36)	-163914.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-8804107-3	chr4	8804018	8804218	+	965.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355382, intron 3 of 36)	intron (NM_001355382, intron 3 of 36)	52794.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-26455077-4	chr14	26454983	26455183	+	962.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310445, intron 12 of 22)	intron (NM_001310445, intron 12 of 22)	79541.0	NM_032008	83997.0	Mm.36769	NM_032008	ENSMUSG00000021870	Slmap	D330001L02Rik|Miranda|Slap|mKIAA1601	sarcolemma associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-113220046-2	chr12	113219933	113220133	+	628.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34130.0	NM_153776	69195.0	Mm.313244	NM_153776	ENSMUSG00000049036	Tmem121	2410008J05Rik|Hole	transmembrane protein 121	protein-coding	2.29368166017039	2.57353125921597	1.61046302452022	2.51042767490522	2.31262972782811	2.69289822087233	2.14973804960666	1.57947231705035	-0.12828445813695	0.886589332011975	0.998431161219273
Merged-chr19-37435894-4	chr19	37435810	37436010	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008245, intron 1 of 3)	intron (NM_008245, intron 1 of 3)	1069.0	NM_008245	15242.0	Mm.33896	NM_008245	ENSMUSG00000024986	Hhex	Hex|Hex1|Hhex-rs2|Prh|Prhx	hematopoietically expressed homeobox	protein-coding	1.14676703367918	1.59313540872881	1.390731840827	1.92159506093541	1.15339445755427	1.60496630705365	1.40063341731997	1.93220431685585	0.0345362989450649	0.975951122527898	0.998431161219273
Merged-chr2-166458653-2	chr2	166458553	166458753	+	631.25	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_015558, exon 3 of 3)	non-coding (NR_015558, exon 3 of 3)	11202.0	NR_015558	319684.0	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-138822466-4	chr1	138822371	138822571	+	905.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	19973.0	NM_001042577	16876.0	Mm.250732	NM_010714	ENSMUSG00000019230	Lhx9	3110009O07Rik|BB104635|LH2B	LIM homeobox protein 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65536276-4	chr9	65536172	65536372	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43815.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-34674067-2	chr2	34673967	34674167	+	667.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	81165.0	NM_001356441	66691.0	Mm.156452	NM_025709	ENSMUSG00000026867	Gapvd1	2010005B09Rik|4432404J10Rik|AW108497|Gapex-5|RAP6|RME-6|mKIAA1521	GTPase activating protein and VPS9 domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-24650594-1	chr12	24650494	24650694	+	846.8333130000001	f1_balb.idr	promoter-TSS (NM_178357)	promoter-TSS (NM_178357)	-777.0	NM_178357	194655.0	Mm.9616	NM_178357	ENSMUSG00000020653	Klf11	9830142A17|D12Ertd427e|Tieg2|Tieg2b|Tieg3	Kruppel-like factor 11	protein-coding	0.779242278297613	0.637113804806056	1.02981146733848	0.611653792203941	1.95769865112478	1.25012066352994	0.626042166685282	1.39591465951577	2.78704758054013	0.0710773673277045	0.401500119208003
Merged-chr6-149188775-4	chr6	149188667	149188867	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113424)	promoter-TSS (NM_001113424)	-55.0	NM_001113424	232566.0	Mm.209147	NM_001113424	ENSMUSG00000068250	Amn1	5830467E07Rik|A230083D09|C730024G19Rik	antagonist of mitotic exit network 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-25320029-4	chr12	25319943	25320143	+	789.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	190869.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	-0.914587585352826	-1.14968844836017	-1.16012564310979	-1.16869906563582	-0.801023986531728	-1.14742666471813	-1.15776289099527	-1.16716442710272	0.46649237519341	0.890119923761052	1
Merged-chr5-115528927-2	chr5	115528827	115529027	+	647.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011223, intron 1 of 10)	intron (NM_011223, intron 1 of 10)	22251.0	NM_133915	19303.0	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	-1.58994551673671	-1.55912852307891	-1.56844783632235	-1.57610299769523	-1.18549093183599	-1.55710898902261	-1.56633814807757	-1.57473272746952	1.78703309985663	0.610309988231842	1
Merged-chr17-47769917-2	chr17	47769817	47770017	+	975.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161723, intron 1 of 8)	intron (NM_001161723, intron 1 of 8)	-15827.0	NM_011549	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-86205493-4	chr15	86205383	86205583	+	920.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-8976.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-23822724-2	chr11	23822624	23822824	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51754.0	NM_009044	19696.0	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117952204-2	chr11	117952104	117952304	+	874.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17162.0	NM_007707	12702.0	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6418686-4	chr19	6418602	6418802	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001205235)	promoter-TSS (NM_001205235)	-36.0	NM_001205235	18190.0	Mm.329616	NM_020253	ENSMUSG00000033768	Nrxn2	6430591O13Rik|mKIAA0921	neurexin II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-73370062-2	chr12	73369965	73370165	+	909.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_046013, intron 3 of 3)	intron (NR_046013, intron 3 of 3)	39498.0	NR_046013	380765.0	Mm.490476	NR_046013	ENSMUSG00000056359	D830013O20Rik	Gm891	RIKEN cDNA D830013O20 gene	ncRNA	2.05016048368177	2.97817567377162	1.04747628430409	2.06793704835001	1.96695482251346	2.10969280369884	1.0543139443884	1.02730204216597	-1.39892697137098	0.236721630767629	0.733553768261449
Merged-chr8-3705918-1	chr8	3705818	3706018	+	545.0	f1_c57bl6.idr	Intergenic	Intergenic	-11744.0	NM_001253743	14128.0	Mm.1233	NM_013517	ENSMUSG00000005540	Fcer2a	CD23|Fce2|Fcer2|Ly-42	Fc receptor, IgE, low affinity II, alpha polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-88042624-4	chr17	88042516	88042716	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081034, intron 1 of 22)	intron (NM_001081034, intron 1 of 22)	22316.0	NM_001348248	225055.0	Mm.386857	NM_001081034	ENSMUSG00000005371	Fbxo11	C80048|Jf	F-box protein 11	protein-coding	2.78884699809973	4.09681046528083	4.20180601827836	4.24219837269791	3.75536515688089	3.9093023043577	3.42755503300906	4.39686333272553	-0.0285968305852066	0.956346139136908	0.998431161219273
Merged-chr2-166305167-4	chr2	166305077	166305277	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31269.0	NR_033467	670775.0	Mm.384326	NR_033467	ENSMUSG00000084840	Gm11468	-	predicted gene 11468	ncRNA	3.8779959546742	3.35208572358873	2.6933151261951	2.61501746570453	3.43347323426935	3.28228372617193	2.84718128503091	2.75763343384072	-0.233950264395599	0.719585616331291	0.998431161219273
Merged-chr17-31076524-1	chr17	31076424	31076624	+	657.0	f1_balb.idr	intron (NM_009593, intron 2 of 14)	intron (NM_009593, intron 2 of 14)	18830.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24885477-1	chr17	24885377	24885577	+	1000.0	f1_balb.idr	exon (NM_001355396, exon 3 of 7)	exon (NM_001355396, exon 3 of 7)	873.0	NM_001355396	26426.0	Mm.36718	NM_011956	ENSMUSG00000039183	Nubp2	D17Wsu11e	nucleotide binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97971582-4	chr6	97971484	97971684	+	774.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001178049, intron 2 of 9)	intron (NM_001178049, intron 2 of 9)	-20199.0	NM_008601	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	-0.924552695556111	-0.911289828791341	-0.607224118864133	-0.764529945492665	-0.924066785025207	-0.908757957807164	-0.600429781448933	-0.920930692509563	-0.476342022222397	0.871472201466218	1
Merged-chr19-3854390-1	chr19	3854290	3854490	+	1000.0	f1_c57bl6.idr	intron (NM_001271496, intron 1 of 11)	intron (NM_001271496, intron 1 of 11)	2617.0	NR_073190	12660.0	Mm.225505	NM_013490	ENSMUSG00000024843	Chka	CK|CK/EK-alpha|Chetk-alpha|Chk|ChoK|EK|EtnK-alpha	choline kinase alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-96466162-4	chr10	96466078	96466278	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-150823.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-29625852-2	chr2	29625752	29625952	+	661.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_054050, intron 1 of 23)	intron (NM_054050, intron 1 of 23)	6132.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-35792137-5	chr8	35792027	35792227	+	957.392395	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	34432.0	NM_027998	71908.0	Mm.37817	NM_027998	ENSMUSG00000055976	Cldn23	2310014B08Rik	claudin 23	protein-coding	4.42046546265475	5.31229205279882	4.05405286171963	4.50855887205479	4.41266765534278	5.46518079852299	3.33517344809674	4.74400145279173	0.0404899485781398	0.931769101408157	0.998431161219273
Merged-chr4-3676278-1	chr4	3676178	3676378	+	548.0	f1_balb.idr	Intergenic	Intergenic	-1843.0	NM_001111096	17096.0	Mm.317331	NM_010747	ENSMUSG00000042228	Lyn	AA407514|Hck-2|p53Lyn|p56Lyn	LYN proto-oncogene, Src family tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-165689996-1	chr1	165689896	165690096	+	716.0	f0_balb.idr	intron (NM_001038846, intron 1 of 5)	intron (NM_001038846, intron 1 of 5)	18098.0	NM_001038846	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-122109134-4	chr14	122109068	122109268	+	782.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080556, intron 1 of 16)	intron (NM_080556, intron 1 of 16)	2086.0	NM_080556	68059.0	Mm.275191	NM_080556	ENSMUSG00000025544	Tm9sf2	1500001N15Rik|AA536814|D14Ertd64e|P76	transmembrane 9 superfamily member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78244088-3	chr15	78243972	78244172	+	684.027771	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	promoter-TSS (NM_008677)	promoter-TSS (NM_008677)	-739.0	NM_008677	17972.0	Mm.2068	NM_008677	ENSMUSG00000071715	Ncf4	AI451400|p40phox	neutrophil cytosolic factor 4	protein-coding	4.22391187559306	2.77059453797963	3.40055270503561	4.49541920395008	3.53476747508809	2.95251771736235	3.75456809236197	3.1215500836265	-0.760036012200044	0.194464158606493	0.674631641388253
Merged-chr11-117962301-4	chr11	117962202	117962402	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7064.0	NM_007707	12702.0	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-141079973-2	chr5	141079873	141080073	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-79377.0	NM_175362	108723.0	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-118154163-2	chr7	118154063	118154263	+	840.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001031814, intron 48 of 62)	intron (NM_001031814, intron 48 of 62)	-24538.0	NM_019419	54208.0	Mm.29924	NM_019419	ENSMUSG00000030654	Arl6ip1	AIP-6|AL022945|ARMER|AU042858|Aip-1|Arl6ip|C85138|mKIAA0069	ADP-ribosylation factor-like 6 interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-87109883-2	chr11	87109783	87109983	+	799.416687	f1_balb.idr|f1_c57bl6.idr	intron (NM_025377, intron 1 of 3)	CpG	622.0	NM_025377	66140.0	Mm.45008	NM_025377	ENSMUSG00000020492	Ska2	1110001A07Rik|C78640|Fam33a	spindle and kinetochore associated complex subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-79257232-2	chr11	79257132	79257332	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-2537.0	NM_019653	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-135639973-1	chr1	135639873	135640073	+	605.666687	f0_balb.idr	Intergenic	L1MB7|LINE|L1	42197.0	NR_151586	215714.0	Mm.472859	NM_175447		Gm4793	EG215714	predicted gene 4793	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129337510-2	chr4	129337410	129337610	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025970, intron 1 of 6)	MER67B|LTR|ERV1	1484.0	NM_025970	67106.0	Mm.36575	NM_025970	ENSMUSG00000057572	Zbtb8os	2010001H09Rik|2310028N13Rik|AI851226|Arch|Archm	zinc finger and BTB domain containing 8 opposite strand	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132883823-4	chr4	132883761	132883961	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133887, intron 1 of 8)	intron (NM_133887, intron 1 of 8)	597.0	NM_133887	100226.0	Mm.28237	NM_133887	ENSMUSG00000028879	Stx12	AI850350|AU041521|Stx13	syntaxin 12	protein-coding	2.25850604341616	1.99207818380479	1.05251520269371	1.03435002209412	1.97163834945188	1.08038359207174	2.04942850607056	1.98106550142773	0.298801319995642	0.810169768359341	0.998431161219273
Merged-chr11-63026785-4	chr11	63026668	63026868	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22634.0	NR_126547	74884.0	Mm.363520	NR_126547	ENSMUSG00000087604	Cdrt4os1	4930452L02Rik	CMT1A duplicated region transcript 4, opposite strand 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120071725-2	chr11	120071625	120071825	+	677.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009734, intron 12 of 25)	intron (NM_009734, intron 12 of 25)	15102.0	NM_009734	12009.0	Mm.2556	NM_009734	ENSMUSG00000039781	Cep131	AZ1|Azi|Azi1	centrosomal protein 131	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-94528383-2	chr8	94528283	94528483	+	856.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4645.0	NM_153507	234577.0	Mm.291815	NM_153507	ENSMUSG00000034361	Cpne2	3322401K10Rik	copine II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-11011191-2	chr8	11011091	11011291	+	658.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_046017, intron 1 of 4)	intron (NR_046017, intron 1 of 4)	-2761.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-25633133-3	chr15	25633034	25633234	+	717.977783	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019472, intron 1 of 40)	ID_B1|SINE|B4	10584.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-33589762-4	chr19	33589672	33589872	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013770, intron 1 of 10)	intron (NM_001013770, intron 1 of 10)	539.0	NM_001013770	381236.0	Mm.491242	NM_001013770	ENSMUSG00000024766	Lipo3	AI747699|Lipo1	lipase, member O3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-103305155-4	chr9	103305064	103305264	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_176979)	promoter-TSS (NM_176979)	-163.0	NM_176979	235559.0	Mm.259893	NM_176979	ENSMUSG00000032555	Topbp1	1110031N14Rik|2810429C13Rik|AI256758|D430026L04Rik|mKIAA0259	topoisomerase (DNA) II binding protein 1	protein-coding	3.77940348742493	4.2025464379867	3.48025771991679	3.80269710134557	3.52432538290223	3.21864173872239	3.10870439677873	2.88910523710553	-0.961856810187376	0.0708895848510377	0.400816795024859
Merged-chr13-110798377-4	chr13	110798264	110798464	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-105135.0	NR_131193	75139.0	Mm.490931	NR_131193	ENSMUSG00000114472	Gm38397	-	predicted gene, 38397	ncRNA	3.34011223756616	3.28684183830167	3.45710273019673	4.08397701062205	3.36744619616623	2.7793107954972	3.71337551045726	3.45845915590112	-0.328223839812952	0.55779002701643	0.960321604678676
Merged-chr3-27677207-3	chr3	27677093	27677293	+	718.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173182, intron 1 of 25)	intron (NM_173182, intron 1 of 25)	33259.0	NM_001356953	72007.0	Mm.38832	NM_173182	ENSMUSG00000039286	Fndc3b	1600019O04Rik|AW550168|Fad104|mKIAA4164	fibronectin type III domain containing 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-103399980-2	chr3	103399935	103400135	+	611.375	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	120742.0	NM_053170	94093.0	Mm.195036	NM_053170	ENSMUSG00000033014	Trim33	8030451N04Rik|AI413936|Ecto|Tif1g	tripartite motif-containing 33	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-52047290-3	chr9	52047161	52047361	+	587.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001104617)	promoter-TSS (NM_001104617)	111.0	NM_001104616	19684.0	Mm.245746	NM_009041	ENSMUSG00000032050	Rdx	AA516625	radixin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-49135846-2	chr7	49135746	49135946	+	686.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_154465, intron 3 of 3)	intron (NR_154465, intron 3 of 3)	26312.0	NR_154465	108167511.0	Mm.400599	NR_154465		9130015G15Rik	-	RIKEN cDNA 9130015G15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-85084942-1	chr1	85084842	85085042	+	599.0	f1_balb.idr	Intergenic	Intergenic	24911.0	NM_213615	381287.0	Mm.487565	NM_213615	ENSMUSG00000089844	A530032D15Rik	Gm1888	RIKEN cDNA A530032D15Rik gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4886142-4	chr16	4886089	4886289	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357061)	promoter-TSS (NM_001357061)	89.0	NM_001357061	17237.0	Mm.291326	NM_029657	ENSMUSG00000022517	Mgrn1	2610042J20Rik|mKIAA0544|md|nc	mahogunin, ring finger 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118593388-2	chr9	118593288	118593488	+	758.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13321.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99330861-2	chr15	99330761	99330961	+	799.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310622, intron 5 of 25)	intron (NM_001310622, intron 5 of 25)	27577.0	NM_001348256	54614.0	Mm.358668	NM_018786	ENSMUSG00000023007	Prpf40b	2610317D23Rik|Hypc	pre-mRNA processing factor 40B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-64747844-5	chr17	64747765	64747965	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008549, intron 20 of 21)	Lx7|LINE|L1	-19246.0	NR_105051	101202683.0	Mm.393309	NR_105051		Dreh	-	down-regulated in hepatocellular carcinoma	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116100573-4	chr11	116100473	116100673	+	990.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9662.0	NM_001205081	217333.0	Mm.347770	NM_172570	ENSMUSG00000020773	Trim47	2210023F24Rik	tripartite motif-containing 47	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-39170359-1	chr10	39170259	39170459	+	657.0	f0_balb.idr	Intergenic	Intergenic	-6565.0	NM_001127376	327743.0	Mm.208111	NM_001127376	ENSMUSG00000062074	Wisp3	CCN6|Gm735|WISP-3	WNT1 inducible signaling pathway protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-25562337-1	chr15	25562237	25562437	+	553.0	f0_balb.idr	Intergenic	Intergenic	-60213.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-165626554-3	chr1	165626445	165626645	+	686.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083897, intron 1 of 5)	intron (NM_001083897, intron 1 of 5)	7996.0	NM_001001880	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78889888-1	chr15	78889788	78889988	+	540.0	f1_c57bl6.idr	intron (NM_145929, intron 11 of 16)	intron (NM_145929, intron 11 of 16)	-1952.0	NR_105920	102466210.0		NR_105920	ENSMUSG00000099267	Mir6955	Gm27769|mmu-mir-6955	microRNA 6955	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-68436371-4	chr2	68436242	68436442	+	875.1354369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016866, intron 1 of 17)	intron (NM_016866, intron 1 of 17)	35639.0	NM_016866	53416.0	Mm.198414	NM_016866	ENSMUSG00000027030	Stk39	AW227544|AW556857|DCHT|RF005|Rnl5|SPAK	serine/threonine kinase 39	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-121851145-4	chr8	121851026	121851226	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21557.0	NM_145605	234825.0	Mm.209329	NM_145605	ENSMUSG00000040263	Klhdc4	AA408426|AV352552|BC012312|G430025P05Rik	kelch domain containing 4	protein-coding	0.804205598899821	1.91898595873688	0.648726066274901	0.846745027284852	1.10587396179641	1.54472523189522	0.651935968065743	1.0260433505102	-0.229211358857283	0.873648501121826	0.998431161219273
Merged-chr7-135649252-2	chr7	135649152	135649352	+	872.6666869999999	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_015548, exon 3 of 3)	non-coding (NR_015548, exon 3 of 3)	-2647.0	NM_001316681	19267.0	Mm.945	NM_011212	ENSMUSG00000041836	Ptpre	PTPe|PTPepsilon|RPTPepsilon	protein tyrosine phosphatase, receptor type, E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-59858228-2	chr10	59858128	59858328	+	575.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359267, intron 10 of 11)	MTE2b|LTR|ERVL-MaLR	-21363.0	NM_019965	56709.0	Mm.103610	NM_019965	ENSMUSG00000020109	Dnajb12	Dj10|mDj10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-72429877-2	chr8	72429765	72429965	+	855.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028500, intron 5 of 8)	intron (NM_028500, intron 5 of 8)	5291.0	NM_029782	73316.0	Mm.196315	NM_028500	ENSMUSG00000019732	Calr3	1700031L01Rik|6330586I20Rik|Crt2|cspn	calreticulin 3	protein-coding	3.08025746163398	3.34203884003545	1.21477093577827	1.68290586842946	1.93734616613802	2.92546966851952	1.22428192309646	2.04953740059812	-0.87859200085649	0.395905354479148	0.883276804275027
Merged-chr12-76536361-2	chr12	76536261	76536461	+	833.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153804, intron 1 of 18)	intron (NM_153804, intron 1 of 18)	2801.0	NM_153804	263406.0	Mm.291854	NM_153804	ENSMUSG00000052609	Plekhg3	BC030417	pleckstrin homology domain containing, family G (with RhoGef domain) member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-50824142-3	chr15	50824044	50824244	+	646.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310481, intron 3 of 5)	MTC|LTR|ERVL-MaLR	64905.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-78475464-4	chr11	78475365	78475565	+	988.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168521, intron 7 of 8)	ORR1F|LTR|ERVL-MaLR	9764.0	NM_026740	52466.0	Mm.131618	NM_026740	ENSMUSG00000020829	Slc46a1	1110002C08Rik|D11Ertd18e|HCP1|Pcft	solute carrier family 46, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-50865147-4	chr14	50865063	50865263	+	998.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009351, intron 4 of 54)	intron (NM_009351, intron 4 of 54)	5391.0	NM_009351	21745.0	Mm.318736	NM_009351	ENSMUSG00000006281	Tep1	Tp1	telomerase associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-103537645-3	chr14	103537593	103537793	+	629.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022886, intron 5 of 30)	Lx8b|LINE|L1	24352.0	NM_022886	64929.0	Mm.244003	NM_022886	ENSMUSG00000022123	Scel	9230114I02Rik	sciellin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-87033730-2	chr11	87033630	87033830	+	584.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_025638)	TTS (NM_025638)	-39968.0	NM_001005341	77864.0	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123749971-2	chr5	123749871	123750071	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025438)	promoter-TSS (NM_025438)	245.0	NM_001042421	208628.0	Mm.441089	NM_001042421	ENSMUSG00000029414	Kntc1	D330012D13|jgl	kinetochore associated 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-58271536-4	chr14	58271428	58271628	+	943.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	198842.0	NM_013518	14180.0	Mm.8846	NM_013518	ENSMUSG00000021974	Fgf9	Eks	fibroblast growth factor 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-19345832-2	chr2	19345732	19345932	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_126563, intron 1 of 3)	intron (NR_126563, intron 1 of 3)	1515.0	NR_126563	108871.0	Mm.107666	NR_126563		4930447M23Rik	-	RIKEN cDNA 4930447M23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-130814014-2	chr4	130813914	130814114	+	770.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011520, intron 1 of 4)	C-rich|Low_complexity|Low_complexity	21477.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-24051273-1	chr5	24051173	24051373	+	626.0	f0_balb.idr	Intergenic	Intergenic	-20583.0	NM_053090	84652.0	Mm.304976	NM_053090	ENSMUSG00000028995	Fam126a	AB030242|Drctnnb1a	family with sequence similarity 126, member A	protein-coding	0.732134510202518	0.789213041657149	0.771120035350947	1.45429878393988	1.37913331659245	2.12266015280113	1.01542105688849	1.87902058992908	2.57384811972534	0.0680136454507293	0.391317639762396
Merged-chr1-183622774-2	chr1	183622674	183622874	+	705.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-126203.0	NR_151520	102637191.0	Mm.417076	NR_151520	ENSMUSG00000103305	Gm34068	-	predicted gene, 34068	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-81571789-3	chr7	81571671	81571871	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001004185, exon 1 of 10)	exon (NM_001004185, exon 1 of 10)	479.0	NM_001004185	434204.0	Mm.181641	NM_001004185	ENSMUSG00000045795	Whamm	BB081391|Whdc1|mKIAA1971	WAS protein homolog associated with actin, golgi membranes and microtubules	protein-coding	1.68833945769446	2.16852191583189	1.06829709924662	2.45748075562458	1.23493763360446	2.29603265534038	1.98902546700752	1.05127458903247	-0.520116334152912	0.656774272074998	0.988505467120973
Merged-chr12-32640851-4	chr12	32640764	32640964	+	890.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-179471.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	3.12139224136903	3.08790849122972	1.75884408603818	1.93255024751185	3.99273643869466	3.00786180764602	2.67223363489591	2.13768439634188	0.90632878546883	0.264190694828798	0.766503073645264
Merged-chr3-136898928-4	chr3	136898827	136899027	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008913, intron 8 of 13)	intron (NM_008913, intron 8 of 13)	228861.0	NM_001293622	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131357911-4	chr1	131357817	131358017	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081011, intron 5 of 22)	intron (NM_001081011, intron 5 of 22)	-78354.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-67451110-3	chr17	67450989	67451189	+	840.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-96598.0	NM_001357625	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-104603335-2	chr7	104603235	104603435	+	917.916626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6156.0	NM_146820	258817.0	Mm.377706	NM_146820	ENSMUSG00000051182	Olfr655	MOR38-1	olfactory receptor 655	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-81689921-2	chr13	81689821	81690021	+	965.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081176, intron 3 of 7)	Lx7|LINE|L1	21092.0	NM_001081176	67486.0	Mm.279781	NM_001081176	ENSMUSG00000035834	Polr3g	2310047G20Rik|AV275904|RPC32|RPC7	polymerase (RNA) III (DNA directed) polypeptide G	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-111536607-4	chr13	111536507	111536707	+	974.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151444, intron 1 of 1)	intron (NR_151444, intron 1 of 1)	13302.0	NR_151444	102636218.0	Mm.343364	NR_151444	ENSMUSG00000085634	Gm15290	-	predicted gene 15290	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-87737420-4	chr11	87737340	87737540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009296)	promoter-TSS (NM_009296)	-111.0	NM_001355753	20922.0	Mm.622	NM_009296	ENSMUSG00000020485	Supt4a	AL022777|Supt4h|Supt4h1|Supt4h1a	suppressor of Ty 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-59426548-2	chr2	59426448	59426648	+	694.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39866.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120444448-2	chr11	120444348	120444548	+	575.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_145363, exon 2 of 3)	exon (NM_145363, exon 2 of 3)	1817.0	NM_145363	208634.0	Mm.209875	NM_145363	ENSMUSG00000039691	Tspan10	Ocsp	tetraspanin 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114679239-2	chr11	114679139	114679339	+	830.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_053273, intron 1 of 13)	PB1|SINE|Alu	3771.0	NM_053273	117160.0	Mm.271934	NM_053273	ENSMUSG00000034714	Ttyh2	1110001A03Rik	tweety family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-154330351-3	chr3	154330283	154330483	+	757.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040387)	promoter-TSS (NR_040387)	177.0	NM_010713	16875.0	Mm.15530	NM_010713	ENSMUSG00000096225	Lhx8	L3|Lhx7	LIM homeobox protein 8	protein-coding	1.01564506434192	1.16495183603983	1.23832477252108	1.19492652622769	0.60627857625538	1.30537218694235	0.627929376284146	0.619073746956271	-1.59873308548681	0.306858123874286	0.807386791720106
Merged-chr10-94317934-4	chr10	94317828	94318028	+	703.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 1 of 4)	Lx2|LINE|L1	5979.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-139473335-2	chr7	139473235	139473435	+	938.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183144, intron 2 of 15)	intron (NM_183144, intron 2 of 15)	72841.0	NM_001355162	212111.0	Mm.28308	NM_183144	ENSMUSG00000025477	Inpp5a	-	inositol polyphosphate-5-phosphatase A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-25864725-2	chr17	25864530	25864730	+	718.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_026633, exon 3 of 5)	exon (NM_026633, exon 3 of 5)	-3115.0	NM_001163766	106618.0	Mm.35470	NM_134124	ENSMUSG00000073434	Wdr90	3230401M21Rik|AI551153|mKIAA1924	WD repeat domain 90	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70720107-4	chr8	70720017	70720217	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195253, intron 1 of 3)	intron (NM_001195253, intron 1 of 3)	1574.0	NM_001195253	100502950.0	Mm.52981	NM_001195253	ENSMUSG00000095026	Gm3336	100041434|2410018E23Rik	predicted gene 3336	protein-coding	0.0492431166304442	0.0844813751790361	1.32804073204886	0.0643867939525495	0.0515309948042357	0.0869729655395673	1.26175105452132	0.0659491477413843	-0.129791773833512	0.951516086605246	0.998431161219273
Merged-chr2-30954065-2	chr2	30953965	30954165	+	621.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133673, intron 2 of 4)	intron (NM_133673, intron 2 of 4)	1064.0	NM_133673	30934.0	Mm.249164	NM_133673	ENSMUSG00000026848	Tor1b	2610016F05Rik|DQ1|torsinB	torsin family 1, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-39783748-2	chr6	39783648	39783848	+	552.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	27188.0	NM_010270	14548.0	Mm.377071	NM_010270	ENSMUSG00000029918	Mrps33	AI841153|CGI-139|Gdap3|MRP-S33|PTD003	mitochondrial ribosomal protein S33	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-31947676-3	chr12	31947566	31947766	+	644.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177993, intron 1 of 8)	B3|SINE|B2	2579.0	NM_177993	73389.0	Mm.390461	NM_153198	ENSMUSG00000002996	Hbp1	1700058O05Rik|BE629963|C330012F01Rik|C86454	high mobility group box transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171053562-4	chr1	171053450	171053650	+	958.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356511, intron 4 of 4)	intron (NM_001356511, intron 4 of 4)	5844.0	NM_001356511	14131.0	Mm.22119	NM_010188	ENSMUSG00000059498	Fcgr3	CD16	Fc receptor, IgG, low affinity III	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75579687-2	chr11	75579582	75579782	+	854.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-8397.0	NM_008850	18738.0	Mm.3128	NM_008850	ENSMUSG00000017781	Pitpna	Pitpn|vb|vibrator	phosphatidylinositol transfer protein, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107566228-4	chr9	107566120	107566320	+	820.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_019742)	TTS (NM_019742)	-2943.0	NM_010489	15587.0	Mm.4834	NM_010489	ENSMUSG00000010047	Hyal2	AI256841|AU020858|AW555733	hyaluronoglucosaminidase 2	protein-coding	2.59266220476927	2.59598806513157	2.90184678249992	1.63397872863333	2.77252203343147	1.7457153502731	1.91211844543057	3.24208626158642	0.139184509682389	0.873664945565949	0.998431161219273
Merged-chr10-57745631-4	chr10	57745549	57745749	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39274.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-71831260-4	chr6	71831153	71831353	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253681)	promoter-TSS (NM_001253681)	-67.0	NM_001362134	76614.0	Mm.235123	NM_029673	ENSMUSG00000052337	Immt	1700082C19Rik|D830041H16Rik|HMP|P87|P87/89|P89	inner membrane protein, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-89240213-2	chr15	89240113	89240313	+	663.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026813, intron 1 of 24)	intron (NM_026813, intron 1 of 24)	28654.0	NM_027805	71474.0	Mm.184055	NM_026813	ENSMUSG00000036561	Ppp6r2	1110033O10Rik|8430411H09Rik|B230107H12Rik|Pp6r2|Saps2	protein phosphatase 6, regulatory subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-89563641-4	chr1	89563539	89563739	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037136, intron 1 of 16)	intron (NM_001037136, intron 1 of 16)	108828.0	NM_001037136	347722.0	Mm.291135	NM_178119	ENSMUSG00000055013	Agap1	Centg2|Ggap1|R75364|mKIAA1099	ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35261128-3	chr17	35261077	35261277	+	679.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	MERVK26-int|LTR|ERVK	-1917.0	NM_010380	14964.0	Mm.439675	NM_010380	ENSMUSG00000073411	H2-D1	H-2D|H2-D	histocompatibility 2, D region locus 1	protein-coding	0.836956046649793	0.923110646248499	0.69829132222779	0.689430925326628	1.31147243731848	1.39156357135645	1.44637765907348	1.28661657819657	3.23693949698732	0.0343349799048107	0.261500902812898
Merged-chr13-55430142-2	chr13	55430043	55430243	+	662.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-3339.0	NM_021489	58992.0	Mm.42224	NM_021489	ENSMUSG00000021492	F12	FXII|HAF	coagulation factor XII (Hageman factor)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-76547768-2	chr12	76547668	76547868	+	913.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_046044, exon 1 of 3)	non-coding (NR_046044, exon 1 of 3)	157.0	NR_046044	100504549.0	Mm.440349	NR_046044	ENSMUSG00000112388	AI463170	-	expressed sequence AI463170	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-8301997-3	chr12	8301901	8302101	+	934.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013527)	promoter-TSS (NM_013527)	-47.0	NM_013527	238057.0	Mm.271308	NM_013527	ENSMUSG00000037660	Gdf7	BMP12	growth differentiation factor 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80793892-2	chr10	80793792	80793992	+	774.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_199322, exon 28 of 28)	3' UTR (NM_199322, exon 28 of 28)	4734.0	NM_023900	78670.0	Mm.41479	NM_023900	ENSMUSG00000035278	Plekhj1	9530063M10Rik	pleckstrin homology domain containing, family J member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-32075119-1	chr16	32075019	32075219	+	540.0	f1_balb.idr	intron (NM_177326, intron 1 of 14)	B2_Mm2|SINE|B2	4223.0	NM_177326	224105.0	Mm.234204	NM_177326	ENSMUSG00000022781	Pak2	5330420P17Rik|A130002K10Rik|AI836325|D16Ertd269e|PAK-2|mKIAA4182	p21 (RAC1) activated kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30634825-4	chr7	30634723	30634923	+	973.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007959, exon 4 of 6)	exon (NM_007959, exon 4 of 6)	1029.0	NM_007959	14008.0	Mm.4829	NM_007959	ENSMUSG00000006311	Etv2	Etsrp71	ets variant 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135855160-3	chr4	135855009	135855209	+	894.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010178)	promoter-TSS (NM_010178)	-962.0	NM_001284196	14105.0	Mm.10229	NM_010178	ENSMUSG00000028676	Srsf10	FUSIP2|Fusip1|NSSR1|NSSR2|Nssr|SRrp40|Sfrs13a|Srsf13a|TASR|TASR1|TASR2	serine/arginine-rich splicing factor 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-47079884-2	chr7	47079784	47079984	+	590.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163565, intron 11 of 13)	intron (NM_001163565, intron 11 of 13)	3340.0	NR_106023	102465639.0		NR_106023	ENSMUSG00000098960	Mir7056	Gm27696|mmu-mir-7056	microRNA 7056	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-20830252-2	chr14	20830158	20830358	+	1000.0	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-6404.0	NM_008873	18792.0	Mm.4183	NM_008873	ENSMUSG00000021822	Plau	u-PA|uPA	plasminogen activator, urokinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166496113-2	chr2	166496013	166496213	+	839.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR27|LTR|ERVK	48662.0	NR_015558	319684.0	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-78402228-2	chr10	78402128	78402328	+	629.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010925, intron 11 of 12)	intron (NM_010925, intron 11 of 12)	6317.0	NR_105872	102465547.0		NR_105872	ENSMUSG00000098376	Mir6907	Gm27351|mmu-mir-6907	microRNA 6907	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-73808733-4	chr18	73808647	73808847	+	985.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145494, intron 1 of 15)	intron (NM_145494, intron 1 of 15)	6645.0	NM_145494	107029.0	Mm.36817	NM_145494	ENSMUSG00000024556	Me2	AW120568|D030040L20Rik|NAD-ME	malic enzyme 2, NAD(+)-dependent, mitochondrial	protein-coding	4.0910896115641	4.11915749637282	4.04875809598987	3.61577808711754	3.59845826076162	3.16740159402235	3.95606091254185	3.29185861374106	-0.638605472702976	0.194362091148797	0.674631641388253
Merged-chr6-128200722-4	chr6	128200617	128200817	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-16914.0	NR_077223	330427.0	Mm.426356	NR_077223	ENSMUSG00000107879	9330102E08Rik	-	RIKEN cDNA 9330102E08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-5347941-4	chr15	5347847	5348047	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-103760.0	NM_008965	19219.0	Mm.18509	NM_008965	ENSMUSG00000039942	Ptger4	EP4|Ptgerep4	prostaglandin E receptor 4 (subtype EP4)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-30010748-3	chr17	30010609	30010809	+	903.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151443, intron 1 of 4)	URR1B|DNA|hAT-Charlie	5670.0	NM_001356265	21769.0	Mm.220972	NM_148926	ENSMUSG00000044477	Zfand3	AW539211|TEG-27|Tex27	zinc finger, AN1-type domain 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-60627780-4	chr3	60627674	60627874	+	998.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001253710, exon 8 of 8)	3' UTR (NM_001253710, exon 8 of 8)	126595.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	3.41394823536445	3.46802239717721	2.33815950203337	2.70009917220214	3.32482811940653	3.4926120558819	2.52407048121906	2.71433004009547	0.0140125994864185	0.983533546284071	0.998431161219273
Merged-chr4-62329527-4	chr4	62329430	62329630	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355385, intron 12 of 27)	intron (NM_001355385, intron 12 of 27)	31066.0	NM_001355385	338355.0	Mm.357792	NM_001045528	ENSMUSG00000066151	Fkbp15	BB131447|C430014M02Rik|FKBO133|FKBP-133|FKBP-15|FKBP133|mKIAA0674	FK506 binding protein 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-48199215-1	chr14	48199115	48199315	+	755.5	f0_balb.idr	intron (NR_003630, intron 1 of 2)	B4A|SINE|B4	499.0	NR_003630	624367.0	Mm.445185	NM_001037921	ENSMUSG00000021846	Gm6498	EG624367	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0.886576886752602	1.024146374156	0.982322204039895	2.37982319293999	1.90733641517896	2.87562126092114	1.30589726075291	3.59012476849184	2.58038174060762	0.156378446949221	0.612346150945416
Merged-chr2-71528770-2	chr2	71528670	71528870	+	861.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010053)	promoter-TSS (NM_010053)	-675.0	NM_010053	13390.0	Mm.475101	NM_010053	ENSMUSG00000041911	Dlx1	Dlx|Dlx-1	distal-less homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-102810005-1	chr2	102809905	102810105	+	573.0	f0_balb.idr	Intergenic	HAL1|LINE|L1	-63245.0	NR_153853	102637542.0	Mm.371582	NR_153852		Gm13872	-	predicted gene 13872	ncRNA	2.75715714169234	3.20201283216459	1.38022345852683	2.04748045469501	3.86426974434232	2.21587919304976	1.68726746034177	3.30618301291859	0.924997277721529	0.304966145339635	0.806417237390156
Merged-chr18-54987882-10	chr18	54987757	54987957	+	773.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175751, exon 2 of 10)	exon (NM_175751, exon 2 of 10)	2323.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-131984180-2	chr2	131984080	131984280	+	788.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F1|SINE|Alu	33143.0	NM_001278520	26434.0	Mm.180750	NM_023043	ENSMUSG00000027338	Prnd	AI450264|Dpl|PrPLP|doppel	prion like protein doppel	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-67781053-4	chr15	67780937	67781137	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	477819.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	6.38168385482342	6.69436311859646	6.24323454503961	6.07015068660542	5.979056624635	5.47389326641971	6.17248869538461	5.68211849924719	-0.553806690657139	0.0223838543108335	0.193581079304215
Merged-chr3-79565231-6	chr3	79565164	79565364	+	861.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162999, intron 1 of 16)	intron (NM_001162999, intron 1 of 16)	2415.0	NM_001162999	329679.0	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-21386572-4	chr5	21386484	21386684	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029195, intron 2 of 18)	L1MB3|LINE|L1	13911.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-62553088-2	chr10	62552988	62553188	+	751.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	25369.0	NM_028197	72320.0	Mm.258955	NM_028197	ENSMUSG00000036955	Kif1bp	0710007C18Rik|2510003E04Rik|KBP|mKIAA1279	KIF1 binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-135130433-4	chr1	135130353	135130553	+	988.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153383, intron 1 of 36)	(A)n|Simple_repeat|Simple_repeat	2122.0	NR_153383	13924.0	Mm.4450	NM_007955		Ptprv	Esp|OST|OST-PTP	protein tyrosine phosphatase, receptor type, V	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30286400-4	chr2	30286293	30286493	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177648)	promoter-TSS (NM_177648)	-39.0	NM_177648	227697.0	Mm.26690	NM_177648	ENSMUSG00000075419	Dolk	BC026973|Tmem15|mKIAA1094	dolichol kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-97681002-6	chr3	97680902	97681102	+	986.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9560.0	NR_106084	102466229.0		NR_106084	ENSMUSG00000098381	Mir7225	Gm27499|mmu-mir-7225	microRNA 7225	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-27273927-4	chr7	27273807	27274007	+	926.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010950, intron 6 of 9)	intron (NM_010950, intron 6 of 9)	15146.0	NM_010950	18223.0	Mm.458153	NM_010950	ENSMUSG00000063160	Numbl	nbl	numb-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-19258761-3	chr3	19258653	19258853	+	582.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122759, intron 2 of 12)	intron (NM_001122759, intron 2 of 12)	6255.0	NM_008802	18583.0	Mm.355614	NM_008802	ENSMUSG00000069094	Pde7a	AU015378|AW047537	phosphodiesterase 7A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115807887-2	chr11	115807787	115807987	+	622.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_080643, exon 3 of 20)	exon (NM_080643, exon 3 of 20)	5705.0	NM_080643	140721.0	Mm.383737	NM_080643	ENSMUSG00000034471	Caskin2	1600028L06Rik|mKIAA1139	CASK-interacting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47220056-4	chr17	47219890	47220090	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001097623, intron 3 of 19)	LTR33|LTR|ERVL	-10240.0	NM_172622	224829.0	Mm.260989	NM_172622		Trerf1	9430096I18Rik|AI429294|B830015H24|RAPA|Trep-132|Trep132	transcriptional regulating factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-66842360-4	chr4	66842249	66842449	+	904.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_021297, exon 3 of 3)	3' UTR (NM_021297, exon 3 of 3)	14798.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-55956525-1	chr7	55956425	55956625	+	559.0	f1_balb.idr	intron (NM_023647, intron 1 of 6)	Lx7|LINE|L1	5968.0	NM_001256133	93790.0	Mm.37249	NM_023647	ENSMUSG00000030452	Nipa2	2600017P10Rik|3830408P04Rik|AB041581	non imprinted in Prader-Willi/Angelman syndrome 2 homolog (human)	protein-coding	2.50155194451651	2.41400868338936	3.90791572146412	1.40241103683177	2.9628938589443	2.25599280736392	2.49626045871836	3.0375507922457	-0.291467090048489	0.734144426585675	0.998431161219273
Merged-chr12-72821045-4	chr12	72820936	72821136	+	724.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	59825.0	NM_008910	19042.0	Mm.261045	NM_008910	ENSMUSG00000021096	Ppm1a	2310003C21Rik|2900017D14Rik|AI427932|AU017636|MMPa-2|MPPa-1	protein phosphatase 1A, magnesium dependent, alpha isoform	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-45410338-4	chr4	45410199	45410399	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1533.0	NM_001009949	230125.0	Mm.260210	NM_001009949	ENSMUSG00000045973	Slc25a51	9130208E07Rik|D130005A03Rik|Gm138|Mcart1	solute carrier family 25, member 51	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-83140680-2	chr15	83140580	83140780	+	693.1999509999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347082, intron 1 of 7)	intron (NM_001347082, intron 1 of 7)	8698.0	NM_178627	73826.0	Mm.23758	NM_178627	ENSMUSG00000041815	Poldip3	1110008P04Rik|AA408269|AL022852|C77954|PDIP46|SKAR|mKIAA1649	polymerase (DNA-directed), delta interacting protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115489025-4	chr5	115488951	115489151	+	948.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4567.0	NM_133760	75387.0	Mm.332616	NM_133760	ENSMUSG00000029524	Sirt4	4930596O17Rik	sirtuin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-107863295-2	chr3	107863195	107863395	+	947.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13935.0	NM_133867	99662.0	Mm.108491	NM_133867	ENSMUSG00000040600	Eps8l3	AI504489|Eps8r3	EPS8-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-58038765-2	chr9	58038665	58038865	+	994.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001243265, intron 4 of 4)	intron (NM_001243265, intron 4 of 4)	6491.0	NM_001243265	330951.0	Mm.406992	NM_001243265		Gm16130	E330033L03	predicted gene 16130	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-10476102-4	chr16	10475975	10476175	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3997.0	NM_001302619	12265.0	Mm.249560	NM_007575	ENSMUSG00000022504	Ciita	C2ta|EG669998|Gm9475|Mhc2ta	class II transactivator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46312654-2	chr19	46312554	46312754	+	820.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001177369)	TTS (NM_001177369)	6724.0	NM_001177370	18034.0	Mm.102365	NM_019408	ENSMUSG00000025225	Nfkb2	NF-kappaB2|lyt|p49|p49/p100|p50B|p52	nuclear factor of kappa light polypeptide gene enhancer in B cells 2, p49/p100	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-89182222-2	chr18	89182122	89182322	+	594.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-15205.0	NM_178687	225825.0	Mm.139293	NM_178687	ENSMUSG00000034028	Cd226	BC051526|DNAM-1|DNAM1|Pta1|TLiSA1	CD226 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69546533-4	chr11	69546398	69546598	+	750.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081330, intron 1 of 85)	intron (NM_001081330, intron 1 of 85)	2610.0	NM_001081330	327954.0	Mm.247478	NM_177617	ENSMUSG00000005237	Dnah2	2900022L05Rik|4930564A01|D130094J20|D330014H01Rik|Dnahc2|Dnhd3	dynein, axonemal, heavy chain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-35730886-2	chr5	35730786	35730986	+	654.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359895, intron 1 of 17)	intron (NM_001359895, intron 1 of 17)	-1610.0	NM_194344	231147.0	Mm.290429	NM_194344	ENSMUSG00000036553	Sh3tc1	4631428G15|BC024909	SH3 domain and tetratricopeptide repeats 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-72861861-3	chr5	72861745	72861945	+	911.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013689, intron 1 of 17)	intron (NM_013689, intron 1 of 17)	6603.0	NM_001113461	21682.0	Mm.319581	NM_013689	ENSMUSG00000029217	Tec	-	tec protein tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-32192599-4	chr14	32192502	32192702	+	892.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016897, intron 4 of 6)	intron (NM_016897, intron 4 of 6)	9289.0	NM_016897	53600.0	Mm.303703	NM_016897	ENSMUSG00000013701	Timm23	Tim23	translocase of inner mitochondrial membrane 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99370544-4	chr15	99370439	99370639	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011711)	promoter-TSS (NM_011711)	-57.0	NM_001310622	22379.0	Mm.29043	NM_011711	ENSMUSG00000023008	Fmnl3	2700073B04Rik|FBP11|Wbp3|mKIAA2014	formin-like 3	protein-coding	-1.17367364971587	-1.14665061133654	-1.15856004380685	-1.16834280623128	-1.17310571790619	-1.14406978763884	-0.42938571406771	-1.16659169643457	2.89727187181404	0.396361616615464	1
Merged-chr5-121820772-3	chr5	121820668	121820868	+	740.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001306126, intron 3 of 8)	intron (NM_001306126, intron 3 of 8)	-1495.0	NR_105998	102465624.0		NR_105998	ENSMUSG00000099063	Mir7031	Gm27859|mmu-mir-7031	microRNA 7031	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-180182377-2	chr2	180182277	180182477	+	626.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081171, exon 58 of 79)	exon (NM_001081171, exon 58 of 79)	-2554.0	NR_105972	102466785.0		NR_105972	ENSMUSG00000098735	Mir7005	Gm27835|mmu-mir-7005	microRNA 7005	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-130284037-4	chr4	130283942	130284142	+	982.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	-8456.0	NM_172702	230779.0	Mm.45132	NM_172702	ENSMUSG00000023232	Serinc2	2310004K20Rik|AW121759|FKSG84|TDE2|Tde2l	serine incorporator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-98955384-4	chr13	98955268	98955468	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER45R|DNA|hAT-Tip100	-28984.0	NM_178716	238799.0	Mm.173286	NM_178716	ENSMUSG00000009470	Tnpo1	AU021749|D13Ertd688e|IPO2|Kpnb2|MIP|MIP1|TRN	transportin 1	protein-coding	2.69974073367661	3.45728358071032	2.73077569479246	1.39158153768738	2.72357926032859	3.48241865873083	3.14244128958792	1.39913647333725	0.225283501664052	0.803609984570642	0.998431161219273
Merged-chr17-47302024-2	chr17	47301924	47302124	+	557.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001097623, intron 5 of 19)	intron (NM_001097623, intron 5 of 19)	-66863.0	NM_001146212	64657.0	Mm.216250	NM_183086	ENSMUSG00000034729	Mrps10	1110038B19Rik|AW743084|Rpms10	mitochondrial ribosomal protein S10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-124752010-4	chr2	124751895	124752095	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	98414.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-58297785-1	chr11	58297685	58297885	+	569.0	f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-9284.0	NM_182996	103836.0	Mm.41440	NM_182996	ENSMUSG00000037243	Zfp692	AI746306|AI839920|Zfp692-ps|Znf692	zinc finger protein 692	protein-coding	-1.21575676353841	-1.1882771616738	-1.1995328574972	-1.2087786211754	-1.21524488394202	-1.18583800543462	-1.19698481468061	-0.540595393272118	2.74438217975722	0.425994238664144	1
Merged-chr11-115714791-2	chr11	115714691	115714891	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6194.0	NM_008163	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-19085032-2	chr3	19084932	19085132	+	741.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	78063.0	NM_028840	74252.0	Mm.200383	NM_028840	ENSMUSG00000027599	Armc1	2310016N05Rik|2900046P06Rik|3110009G21Rik|AA409258|AW048872|Arcp|C330014L16Rik	armadillo repeat containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-44427621-3	chr10	44427523	44427723	+	827.583313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31125.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-66520268-4	chr18	66520081	66520281	+	915.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16003.0	NR_040528	100503565.0	Mm.98256	NR_040528		Gm9926	-	predicted gene 9926	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-110844649-4	chr12	110844570	110844770	+	809.299988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_152102)	TTS (NR_152102)	3641.0	NR_152102	66709.0	Mm.390504	NR_152102		4921507G05Rik	-	RIKEN cDNA 4921507G05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-83440460-2	chr15	83440360	83440560	+	723.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358643, intron 1 of 9)	intron (NM_001358643, intron 1 of 9)	7420.0	NM_001358644	23970.0	Mm.23978	NM_011862	ENSMUSG00000016664	Pacsin2	AI197433	protein kinase C and casein kinase substrate in neurons 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-102316825-4	chr11	102316724	102316924	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011551, intron 1 of 20)	CpG	463.0	NM_001044383	21429.0	Mm.2845	NM_011551	ENSMUSG00000020923	Ubtf	A930005G04Rik|NOR-90|Tcfubf|UBF|UBF-1|UBF1	upstream binding transcription factor, RNA polymerase I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-59326820-4	chr10	59326726	59326926	+	811.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316370, intron 1 of 13)	intron (NM_001316370, intron 1 of 13)	3530.0	NM_001316370	18451.0	Mm.2212	NM_011030	ENSMUSG00000019916	P4ha1	AL022634|P4ha	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-103494644-3	chr12	103494528	103494728	+	787.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A1|LTR|ERVL-MaLR	-37405.0	NM_145449	217845.0	Mm.298416	NM_145449	ENSMUSG00000021208	Ifi27l2b	1810023F06Rik|ISG12(b2)	interferon, alpha-inducible protein 27 like 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69411317-4	chr11	69411224	69411424	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001017426, intron 1 of 22)	CpG	2351.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-151368120-2	chr5	151368020	151368220	+	858.833374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045699)	promoter-TSS (NR_045699)	-555.0	NR_045700	625175.0	Mm.443286	NR_045699	ENSMUSG00000097321	1700028E10Rik	A630054D14|Gm6561	RIKEN cDNA 1700028E10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-109585202-3	chr11	109585105	109585305	+	832.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145940, intron 4 of 12)	intron (NM_145940, intron 4 of 12)	26184.0	NM_145940	52639.0	Mm.35817	NM_145940	ENSMUSG00000041895	Wipi1	4930533H01Rik|AW411817|D11Ertd498e	WD repeat domain, phosphoinositide interacting 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5656959-2	chr17	5656859	5657059	+	758.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 2 of 8)	intron (NM_146073, intron 2 of 8)	-141698.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-46867008-1	chr18	46866908	46867108	+	653.0	f0_balb.idr	intron (NM_029008, intron 3 of 19)	intron (NM_029008, intron 3 of 19)	16969.0	NM_029008	74574.0	Mm.26379	NM_029008	ENSMUSG00000024481	Lvrn	4833403I15Rik|APQ|Aqpep	laeverin	protein-coding	-0.125734992786926	-0.0894029735751909	-0.100909786965668	-0.110042352470259	0.564485036585911	1.55984103044218	-0.0983406622298439	-0.108430219974677	4.62165008190366	0.026837986426579	1
Merged-chr3-50444329-1	chr3	50444229	50444429	+	683.5	f0_balb.idr	promoter-TSS (NM_011990)	promoter-TSS (NM_011990)	-716.0	NM_011990	26570.0	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-95380700-1	chr1	95380600	95380800	+	647.0	f0_balb.idr	Intergenic	MTEa|LTR|ERVL-MaLR	67072.0	NM_026321	67698.0	Mm.272705	NM_026321	ENSMUSG00000051185	Fam174a	2310044D20Rik|Fam174|Naa6|Tmem157	family with sequence similarity 174, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-14149713-2	chr12	14149613	14149813	+	578.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_029007, exon 2 of 2)	3' UTR (NM_029007, exon 2 of 2)	2325.0	NM_029007	105005.0	Mm.227253	NM_029007	ENSMUSG00000020607	Fam84a	2310003N02Rik|4731402F03Rik|AW125753|Nse1	family with sequence similarity 84, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-98772021-2	chr15	98771921	98772121	+	612.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011718, exon 5 of 5)	3' UTR (NM_011718, exon 5 of 5)	6129.0	NM_011718	22410.0	Mm.4709	NM_011718	ENSMUSG00000022996	Wnt10b	Wnt12	wingless-type MMTV integration site family, member 10B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-19655077-2	chr2	19654977	19655177	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_033642)	TTS (NR_033642)	2820.0	NR_033642	100041244.0	Mm.407223	NR_033642		Gm3230	-	predicted gene 3230	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-69776082-2	chr14	69775982	69776182	+	899.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_020275, exon 5 of 8)	exon (NM_020275, exon 5 of 8)	8610.0	NM_020275	21933.0	Mm.193430	NM_020275	ENSMUSG00000022074	Tnfrsf10b	DR5|KILLER|Ly98|MK|TRAILR2|TRICK2A|TRICK2B|TRICKB	tumor necrosis factor receptor superfamily, member 10b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-15463456-2	chr5	15463367	15463567	+	630.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	65755.0	NM_001310449	100861755.0	Mm.382859	NM_001310449	ENSMUSG00000106445	Gm21190	-	predicted gene, 21190	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-16004517-3	chr3	16004414	16004614	+	741.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081687, intron 1 of 3)	RLTR23|LTR|ERV1	1818.0	NM_001081687	381484.0	Mm.217376	NM_001081687	ENSMUSG00000078780	Gm5150	-	predicted gene 5150	protein-coding	0.654487943095905	0.922298441815761	0.374148404051879	1.23846943683151	0.357193968913928	1.06442196034349	0.376134655258459	0.368388416471179	-1.3360534066801	0.462970646316446	1
Merged-chr19-28677617-4	chr19	28677520	28677720	+	973.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045330)	promoter-TSS (NR_045330)	-604.0	NR_045330	320176.0	Mm.406716	NR_045330	ENSMUSG00000097735	D930032P07Rik	-	RIKEN cDNA D930032P07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-82367000-4	chr8	82366927	82367127	+	856.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008357, intron 2 of 7)	L1_Mus3|LINE|L1	35559.0	NM_001254747	16168.0	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	0.48984982581337	0.721099507808964	0.927889024736318	0.355634111056887	0.731136222369529	0.369555351561133	0.362553439581582	0.991629890091783	0.0222838818445154	0.989918037955158	1
Merged-chr4-136885499-5	chr4	136885373	136885573	+	938.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009777, intron 1 of 2)	intron (NM_009777, intron 1 of 2)	704.0	NM_009777	12260.0	Mm.2570	NM_009777	ENSMUSG00000036905	C1qb	-	complement component 1, q subcomponent, beta polypeptide	protein-coding	2.44074532002397	2.60696578788595	3.11540969500196	2.86863305404328	2.34616719668548	2.12726064857204	3.05850568318856	2.96747270792502	-0.181856964930926	0.803997596617795	0.998431161219273
Merged-chr4-109668260-1	chr4	109668160	109668360	+	841.0	f1_c57bl6.idr	Intergenic	Intergenic	-1504.0	NM_001301368	12580.0	Mm.1912	NM_007671	ENSMUSG00000028551	Cdkn2c	C77269|INK4c|p18|p18-INK4c|p18-INK6|p18INK4c	cyclin dependent kinase inhibitor 2C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123258641-2	chr5	123258541	123258741	+	592.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	30451.0	NM_026000	67151.0	Mm.278997	NM_026000	ENSMUSG00000029440	Psmd9	1500011J20Rik|2610202L11Rik|Bridge-1|P27	proteasome (prosome, macropain) 26S subunit, non-ATPase, 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-110802160-2	chr7	110802060	110802260	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009667, intron 7 of 14)	intron (NM_009667, intron 7 of 14)	29556.0	NM_009667	11717.0	Mm.3238	NM_009667	ENSMUSG00000005686	Ampd3	-	adenosine monophosphate deaminase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-42019043-4	chr19	42018953	42019153	+	959.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145500, intron 1 of 2)	RLTR34B_MM|LTR|ERVK	-16985.0	NM_020033	56642.0	Mm.143737	NM_020033	ENSMUSG00000025172	Ankrd2	Arpp|mArpp	ankyrin repeat domain 2 (stretch responsive muscle)	protein-coding	3.00384811180143	1.80801356475209	3.50936899761508	1.69583446797917	2.88497680354012	2.06215367740252	3.2812446406152	2.76621542723604	0.131739040447148	0.875189642409932	0.998431161219273
Merged-chr19-4877843-2	chr19	4877742	4877942	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013456)	promoter-TSS (NM_013456)	67.0	NM_013456	11474.0	Mm.5316	NM_013456	ENSMUSG00000006457	Actn3	-	actinin alpha 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69104587-2	chr11	69104487	69104687	+	617.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159367, intron 16 of 22)	intron (NM_001159367, intron 16 of 22)	4435.0	NM_001159367	18626.0	Mm.7373	NM_011065	ENSMUSG00000020893	Per1	Hftm|Per|m-rigui|mPer1	period circadian clock 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-147434130-2	chr4	147434030	147434230	+	983.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039209, intron 1 of 2)	RMER17C|LTR|ERVK	-119147.0	NM_001014397	433804.0	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154	zinc finger protein 985	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-19729309-2	chr14	19729209	19729409	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-21948.0	NM_008695	18074.0	Mm.20348	NM_008695	ENSMUSG00000021806	Nid2	AW547149|Ly111|NID-2|entactin-2|nidogen-2	nidogen 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-52244175-1	chr18	52244075	52244275	+	830.0	f0_balb.idr	Intergenic	Intergenic	-87361.0	NM_026286	67634.0	Mm.179144	NM_026286	ENSMUSG00000024510	Ftmt	4930447C24Rik|FerH|Fth3|MtF	ferritin mitochondrial	protein-coding	0.13666871311561	0.00515027216883243	0.785535331278688	-0.00536955555087945	0.141079197941462	0.00648465532164377	0.598733387864622	-0.00456703291884666	-0.465144619338083	0.824322684387979	1
Merged-chr17-70846411-4	chr17	70846305	70846505	+	943.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001164077, exon 1 of 2)	5' UTR (NM_001164077, exon 1 of 2)	372.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-43886276-2	chr5	43886176	43886376	+	725.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007646, intron 1 of 7)	B4A|SINE|B4	17467.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-107726437-2	chr5	107726337	107726537	+	639.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001267621)	promoter-TSS (NM_001267621)	-632.0	NM_001267621	14581.0	Mm.2078	NM_010278	ENSMUSG00000029275	Gfi1	AW495828|Gfi-1|Pal-1|Pal1	growth factor independent 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-11485466-4	chr19	11485375	11485575	+	973.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6563.0	NM_001164202	666926.0	Mm.486382	NM_001164202	ENSMUSG00000058470	Gm8369	EG666926	predicted gene 8369	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-98605803-1	chr7	98605703	98605903	+	859.0	f0_balb.idr	intron (NM_172280, intron 14 of 19)	intron (NM_172280, intron 14 of 19)	50766.0	NM_172280	233545.0	Mm.387819	NM_172280	ENSMUSG00000035401	Emsy	2210018M11Rik|2310016L09Rik|AU019521|AU019557	EMSY, BRCA2-interacting transcriptional repressor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132945617-6	chr4	132945490	132945690	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23039.0	NM_001163792	230789.0	Mm.11473	NM_145553	ENSMUSG00000028878	Fam76a	-	family with sequence similarity 76, member A	protein-coding	5.25712784643736	4.11375481906192	5.1731905564872	4.87067497864219	5.06409149884002	4.50346856255736	4.87059313148575	5.58147892194607	0.164690879884588	0.657079718377573	0.988668480197407
Merged-chr3-148326241-1	chr3	148326141	148326341	+	681.0	f1_balb.idr	Intergenic	MTC|LTR|ERVL-MaLR	628394.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	-0.36579865386142	-0.353999281158977	-0.357878769900565	-0.202996753180102	-0.10399497325987	0.249966310095485	-0.183163617447332	-0.360342014379587	2.65771758661987	0.257704942871385	1
Merged-chr1-166349948-3	chr1	166349868	166350068	+	960.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Rod|LINE|L1	-29199.0	NM_030245	27878.0	Mm.100665	NM_030245	ENSMUSG00000026563	Tada1	2900026B15Rik|D1Ertd251e|Staf42|Tada1l	transcriptional adaptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-12291396-2	chr12	12291296	12291496	+	558.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029758, intron 2 of 12)	MLT1A0|LTR|ERVL-MaLR	29257.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55113913-2	chr14	55113813	55114013	+	640.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_177049, exon 3 of 6)	exon (NM_177049, exon 3 of 6)	3022.0	NM_177049	319984.0	Mm.19047	NM_177049	ENSMUSG00000022208	Jph4	9330157P13Rik|JP-4|JPHL1	junctophilin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-37236848-1	chr9	37236748	37236948	+	673.0	f0_balb.idr	intron (NM_001145960, intron 10 of 18)	intron (NM_001145960, intron 10 of 18)	18890.0	NM_020258	56857.0	Mm.440037	NM_020258	ENSMUSG00000032122	Slc37a2	G3PP|Slc37a1|cI-2|ci2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-66080707-2	chr5	66080607	66080807	+	924.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_139065, intron 2 of 6)	intron (NM_139065, intron 2 of 6)	17472.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-129994084-2	chr5	129993984	129994184	+	630.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357025, intron 8 of 10)	ID_B1|SINE|B4	8965.0	NM_010368	110006.0	Mm.3317	NM_010368	ENSMUSG00000025534	Gusb	AI747421|Gur|Gus|Gus-r|Gus-s|Gus-t|Gus-u|Gut|asd|g	glucuronidase, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19305282-3	chr7	19305245	19305445	+	953.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347586, intron 3 of 4)	intron (NM_001347586, intron 3 of 4)	4700.0	NM_008036	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-74930520-4	chr15	74930415	74930615	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24536.0	NM_001164039	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	1.76350671970405	1.90454235801857	1.3382987251937	1.56830463113383	1.60125403633489	0.973814759493903	0.957995127699267	1.45213164552755	-1.34724698562591	0.277750583411383	0.781531777619553
Merged-chr14-66278423-3	chr14	66278318	66278518	+	728.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	2634.0	NM_001162366	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	2.1630238503523	3.26979930082984	2.50052009376817	1.28331694784243	2.3077169849916	2.85238470069061	3.55106734976575	1.29021172311402	0.464863442647545	0.632734307780075	0.982230082053879
Merged-chr7-66344559-1	chr7	66344459	66344659	+	703.0	f1_c57bl6.idr	intron (NM_146191, intron 2 of 33)	B4A|SINE|B4	37165.0	NR_106024	102465640.0		NR_106024	ENSMUSG00000098353	Mir7057	Gm27550|mmu-mir-7057	microRNA 7057	ncRNA	1.60831597382808	0.885317293259701	0.851041076711748	2.19985743426557	1.10326845735629	0.629659859941286	0.612813072592299	0.598016862426088	-3.08668159297179	0.0449823486757606	0.304914248255241
Merged-chr3-60472160-4	chr3	60472055	60472255	+	853.3916630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253713)	promoter-TSS (NM_001253713)	-675.0	NM_001253713	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-50227864-2	chr11	50227764	50227964	+	980.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145926, intron 1 of 14)	intron (NM_145926, intron 1 of 14)	2529.0	NM_145926	103534.0	Mm.86759	NM_145926	ENSMUSG00000036620	Mgat4b	AA407995|GnTIVb	mannoside acetylglucosaminyltransferase 4, isoenzyme B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-139285465-1	chr4	139285365	139285565	+	571.0	f1_balb.idr	intron (NM_001037761, intron 6 of 9)	intron (NM_001037761, intron 6 of 9)	25243.0	NR_151463	212555.0	Mm.45131	NM_145384	ENSMUSG00000028744	Pqlc2	BC019216	PQ loop repeat containing 2	protein-coding	1.81266494525471	1.69960613433969	1.16023774045994	2.69470535421398	2.5719445965111	1.71257896393775	1.16745339618802	2.84042708605886	0.609290872495093	0.578278219296205	0.965985075107763
Merged-chr17-31075643-4	chr17	31075538	31075738	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009593, intron 2 of 14)	intron (NM_009593, intron 2 of 14)	17944.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	4.72855844943178	5.08309819138979	4.67877214982411	4.84623359013404	4.79708457537074	4.99403818439736	4.33777970481734	4.83069897823044	-0.0969210764184584	0.776281796413054	0.998431161219273
Merged-chr10-95501933-4	chr10	95501793	95501993	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359477)	promoter-TSS (NM_001359477)	56.0	NM_001359476	67270.0	Mm.30008	NM_026065	ENSMUSG00000062981	Mrpl42	2700009F22Rik|2900055D03Rik|D10Ertd322e|HSPC204|L31mt|L42mt|MRP-L31|MRP-L42|MRP-S32|PTD007|Rpml31|S32mt	mitochondrial ribosomal protein L42	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-59401195-4	chr2	59401074	59401274	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14492.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-107842581-3	chr13	107842493	107842693	+	754.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 2 of 14)	intron (NM_145456, intron 2 of 14)	47471.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-120036410-4	chr2	120036329	120036529	+	882.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_104353, exon 15 of 27)	non-coding (NR_104353, exon 15 of 27)	2996.0	NM_145378	211429.0	Mm.41467	NM_145378	ENSMUSG00000098488	Pla2g4b	A030011C02Rik|Gm1013|cPLA2-beta	phospholipase A2, group IVB (cytosolic)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-82470206-4	chr18	82470107	82470307	+	868.4249880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4916.0	NM_001025245	17196.0	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-96982517-4	chr11	96982368	96982568	+	889.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4780.0	NM_001080964	78912.0	Mm.491183	NM_030220	ENSMUSG00000018678	Sp2	4930480I16Rik|mKIAA0048	Sp2 transcription factor	protein-coding	1.06844797057012	0.571740682369864	1.39450516649781	1.14401357825802	0.542104609064649	0.574039957057096	0.563752223187729	1.35157576596776	-1.18164880526621	0.484699497350805	0.931503676591975
Merged-chr10-61383604-5	chr10	61383502	61383702	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013753)	promoter-TSS (NM_013753)	-79.0	NM_013753	27355.0	Mm.269699	NM_013753	ENSMUSG00000020092	Pald1	MMPAL|Pald|mKIAA1274	phosphatase domain containing, paladin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-31727628-4	chr5	31727505	31727705	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181281, intron 2 of 10)	intron (NM_181281, intron 2 of 10)	29555.0	NM_144541	107976.0	Mm.482126	NM_144541	ENSMUSG00000052139	Babam2	6030405P19Rik|AI429776|B830038C02Rik|Bre	BRISC and BRCA1 A complex member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35021977-2	chr17	35021877	35022077	+	678.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_138582, intron 9 of 16)	RLTR18B|LTR|ERVK	5398.0	NM_001347347	27762.0	Mm.56895	NM_138582	ENSMUSG00000007030	Vwa7	C6orf27|D17H6S56E-3|G7c|NG37	von Willebrand factor A domain containing 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-152396525-4	chr3	152396414	152396614	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001287139)	promoter-TSS (NM_001287139)	-170.0	NM_001287139	108946.0	Mm.379292	NM_198416	ENSMUSG00000039068	Zzz3	3110065C23Rik|6430567E01Rik|AA408566|AI481057|AW556059|R75514	zinc finger, ZZ domain containing 3	protein-coding	6.84581897824756	6.8958785695957	7.22746419949017	5.8105335290693	6.98842241842882	6.78304293452401	7.09443904023758	6.08115109113034	0.00578079693419784	0.982891490294364	0.998431161219273
Merged-chr2-33755839-4	chr2	33755761	33755961	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175184, intron 7 of 9)	intron (NM_175184, intron 7 of 9)	-49955.0	NR_045729	320482.0	Mm.442057	NR_045729	ENSMUSG00000086484	Nron	A630071L07Rik|Gm24353	non-protein coding RNA, repressor of NFAT	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32009011-3	chr2	32008913	32009113	+	935.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172268, intron 18 of 35)	intron (NM_172268, intron 18 of 35)	34563.0	NM_172268	227720.0	Mm.289686	NM_172268	ENSMUSG00000001855	Nup214	BC039282|CAN|D2H9S46E	nucleoporin 214	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-82769917-4	chr6	82769813	82770013	+	934.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013820, intron 1 of 17)	intron (NM_013820, intron 1 of 17)	4541.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94944370-2	chr10	94944270	94944470	+	960.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_018797, exon 1 of 31)	exon (NM_018797, exon 1 of 31)	208.0	NM_018797	54712.0	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-90109613-4	chr15	90109524	90109724	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-114687.0	NM_001033441	380959.0	Mm.17853	NM_001033441	ENSMUSG00000075470	Alg10b	AA469671|AU045404|AW123895|C85569|Deaf1|Gm917|nse5	asparagine-linked glycosylation 10B (alpha-1,2-glucosyltransferase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-51195470-4	chr3	51195368	51195568	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28979.0	NM_009834	12457.0	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-26580262-3	chr14	26580161	26580361	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145969, intron 1 of 17)	intron (NM_145969, intron 1 of 17)	711.0	NM_145969	211922.0	Mm.260512	NM_145969	ENSMUSG00000040818	Dennd6a	Fam116a	DENN/MADD domain containing 6A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-88054761-6	chr10	88054706	88054906	+	848.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36266.0	NM_029971	110312.0	Mm.391436	NM_029971	ENSMUSG00000035383	Pmch	A230109K23Rik	pro-melanin-concentrating hormone	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-133424247-2	chr1	133424147	133424347	+	998.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011439)	promoter-TSS (NM_011439)	-35.0	NM_011439	20668.0	Mm.8575	NM_011439	ENSMUSG00000070643	Sox13	AA407916|AW259412|AW540933|Sox-13	SRY (sex determining region Y)-box 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-62512089-2	chr10	62511989	62512189	+	611.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358965, intron 1 of 3)	B1_Mur2|SINE|Alu	-4332.0	NM_011157	19073.0	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-77732283-3	chr9	77732178	77732378	+	884.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22257.0	NR_151778	14629.0	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	1.25276381739967	1.65841716562651	0.852488532077106	1.54504772742212	1.47154473585662	1.26827311312883	0.855389198850857	1.32769908851142	-0.446841032653547	0.736082551572009	0.998431161219273
Merged-chr10-128083812-1	chr10	128083712	128083912	+	543.0	f0_balb.idr	intron (NM_016774, intron 1 of 9)	CpG	505.0	NM_016774	11947.0	Mm.238973	NM_016774	ENSMUSG00000025393	Atp5b	Atp5f1b	ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	protein-coding	-0.294083384950798	-0.277963382818132	0.430175288204581	-0.287290034214969	-0.293070061983337	-0.276782190008417	0.44311158986884	-0.286577643912737	0.0410571026119648	0.987250810110592	1
Merged-chr4-138464818-1	chr4	138464718	138464918	+	780.0	f1_balb.idr	Intergenic	Intergenic	9670.0	NM_025451	66259.0	Mm.41603	NM_025451	ENSMUSG00000046447	Camk2n1	1810006K23Rik|AI848599|AI891706	calcium/calmodulin-dependent protein kinase II inhibitor 1	protein-coding	0.584453241104684	0.907711767639453	0.872165177949814	1.46177749047714	0.588229625071852	1.46941440393024	0.627779309086591	2.26136630915226	1.47667090231157	0.322008841991546	0.823903365381149
Merged-chr2-26628456-2	chr2	26628356	26628556	+	665.224976	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019833)	promoter-TSS (NM_019833)	-1.0	NM_019833	56279.0	Mm.279863	NM_019833	ENSMUSG00000036186	Fam69b	AB030186|AW209000|B230317C12Rik|PIP49	family with sequence similarity 69, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-39431746-4	chr16	39431654	39431854	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1E1A|LTR|ERVL-MaLR	-242804.0	NR_153800	102640746.0		NR_153800		Gm36742	-	predicted gene, 36742	ncRNA	5.93192793390571	6.50648679641406	6.55034383326977	5.310885312788	6.12722218484098	6.60749437283399	6.23764786573629	6.3188151870116	0.194039195774455	0.469282256717372	0.924757197727779
Merged-chr12-112799882-2	chr12	112799782	112799982	+	810.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9093.0	NM_145450	217887.0	Mm.186678	NM_145450	ENSMUSG00000037594	BC022687	AW050009|C130001I08Rik|Clba1|Flj20080	cDNA sequence BC022687	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-52065091-2	chr16	52064991	52065191	+	621.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033238, intron 3 of 17)	intron (NM_001033238, intron 3 of 17)	33542.0	NM_001033238	208650.0	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-54985857-4	chr18	54985778	54985978	+	975.341675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175751, intron 2 of 9)	intron (NM_175751, intron 2 of 9)	4302.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116084150-2	chr11	116084050	116084250	+	653.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361446, intron 1 of 6)	intron (NM_001361446, intron 1 of 6)	2845.0	NM_001361446	22378.0	Mm.284792	NM_016852	ENSMUSG00000034341	Wbp2	-	WW domain binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-36640665-2	chr16	36640565	36640765	+	914.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019388, intron 1 of 7)	intron (NM_019388, intron 1 of 7)	25412.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-122641591-4	chr10	122641492	122641692	+	949.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6747.0	NR_105839	102465223.0		NR_105839	ENSMUSG00000098522	Mir6412	Gm27364|mmu-mir-6412	microRNA 6412	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-83272782-4	chr17	83272712	83272912	+	900.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57529.0	NM_134117	106522.0	Mm.311974	NM_134117	ENSMUSG00000024247	Pkdcc	AI115348|AW548124|Adtk1|ESTM17|MAd1|Sgk493|Vlk|X83346	protein kinase domain containing, cytoplasmic	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105533504-1	chr8	105533404	105533604	+	613.0	f0_balb.idr	intron (NM_013477, intron 2 of 7)	intron (NM_013477, intron 2 of 7)	14758.0	NM_008289	15484.0	Mm.5079	NM_008289	ENSMUSG00000031891	Hsd11b2	11HSD2	hydroxysteroid 11-beta dehydrogenase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-9806093-4	chr1	9805997	9806197	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177547, intron 1 of 16)	intron (NM_177547, intron 1 of 16)	7967.0	NM_177547	170755.0	Mm.336410	NM_133220	ENSMUSG00000025915	Sgk3	2510015P22Rik|A330005P07Rik|Cisk|fy|fz	serum/glucocorticoid regulated kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-18983559-3	chr2	18983486	18983686	+	849.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008845, intron 1 of 9)	MTD|LTR|ERVL-MaLR	14535.0	NM_008845	18718.0	Mm.313977	NM_008845	ENSMUSG00000026737	Pip4k2a	AW742916|Pip5k2a	phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106151335-2	chr11	106151235	106151435	+	637.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011947, intron 13 of 15)	intron (NM_011947, intron 13 of 15)	8592.0	NM_001356459	67803.0	Mm.21687	NM_172397	ENSMUSG00000040699	Limd2	0610025L06Rik|AI413966	LIM domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-9425982-2	chr5	9425882	9426082	+	560.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153371, intron 8 of 21)	intron (NR_153371, intron 8 of 21)	50278.0	NR_030537	100124492.0		NR_030537	ENSMUSG00000077896	Mir879	Mirn879|mir-879|mmu-mir-879	microRNA 879	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-61802877-2	chr2	61802777	61802977	+	578.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1576.0	NM_009322	21375.0	Mm.308525	NM_009322	ENSMUSG00000035033	Tbr1	-	T-box brain gene 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-10486008-4	chr15	10485927	10486127	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026396)	promoter-TSS (NM_026396)	9.0	NM_011232	19355.0	Mm.38376	NM_011232	ENSMUSG00000022248	Rad1	mRAD1	RAD1 checkpoint DNA exonuclease	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-61230592-4	chr19	61230383	61230583	+	806.392822	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur1|LINE|L1	-2065.0	NM_009970	12982.0	Mm.287228	NM_009970	ENSMUSG00000059326	Csf2ra	CD116|Csfgmra|GM-CSF-Ra|GM-CSFR	colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4930762-2	chr19	4930633	4930833	+	704.25	f0_balb.idr|f0_c57.idr	3' UTR (NM_001347422, exon 6 of 6)	3' UTR (NM_001347422, exon 6 of 6)	-2446.0	NM_133803	75221.0	Mm.234769	NM_133803	ENSMUSG00000063904	Dpp3	4930533O14Rik|C86324|DPP III	dipeptidylpeptidase 3	protein-coding	2.47755586846818	1.8548161078605	2.0672720837679	1.15669859425675	2.49891345279678	1.86863858136104	2.08416558955346	1.16049777686623	0.0410342003179929	0.970302780244523	0.998431161219273
Merged-chr4-95052300-4	chr4	95052215	95052415	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010591)	promoter-TSS (NM_010591)	-93.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-24496369-4	chr4	24496268	24496468	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199467)	promoter-TSS (NM_199467)	-83.0	NR_149739	212377.0	Mm.120919	NM_199467	ENSMUSG00000045751	Mms22l	F730047E07Rik|Gm134	MMS22-like, DNA repair protein	protein-coding	7.50683563922428	7.68063656625452	8.01290117130619	7.00578227360562	7.10896980614418	7.74907851557008	7.40804022023539	6.65014881878864	-0.328234169614597	0.145852821576131	0.596091332081597
Merged-chr5-121721072-2	chr5	121720972	121721172	+	811.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_009125, intron 1 of 24)	B3A|SINE|B2	9463.0	NM_009125	20239.0	Mm.260900	NM_009125	ENSMUSG00000042605	Atxn2	9630045M23Rik|ATX2|AW544490|Sca2	ataxin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-58958839-2	chr11	58958739	58958939	+	867.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2872.0	NM_001318003	382523.0		NM_001318003		Gm12260	H3t	predicted gene 12260	protein-coding	-0.353050622677781	0.000595971962728759	-0.60768439611006	-0.610326468020422	-0.61405118564482	-0.603477499469332	-0.606928159563082	-0.445811577650343	-2.35963958043259	0.373901632585068	1
Merged-chr9-21180145-2	chr9	21180045	21180245	+	718.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183408, intron 1 of 14)	intron (NM_183408, intron 1 of 14)	-3956.0	NM_001310750	18577.0	Mm.191749	NM_019798	ENSMUSG00000032177	Pde4a	D9Ertd60e|Dpde2	phosphodiesterase 4A, cAMP specific	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-103964225-4	chr11	103964129	103964329	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-2496.0	NM_001304574	11841.0	Mm.5061	NM_007477	ENSMUSG00000062421	Arf2	-	ADP-ribosylation factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-121390590-2	chr5	121390490	121390690	+	819.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-4975.0	NM_172275	231712.0	Mm.20488	NM_172275	ENSMUSG00000042726	Trafd1	1110008K06Rik|Fln29	TRAF type zinc finger domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-88496525-3	chr17	88496425	88496625	+	977.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33599.0	NM_028658	73825.0	Mm.271817	NM_028658	ENSMUSG00000034709	Ppp1r21	1110018J12Rik|AI426045|AW550781|Ccdc128|Klraq1	protein phosphatase 1, regulatory subunit 21	protein-coding	0.262625613856708	0.491941250293375	0.27851564814775	0.272568720105591	1.03511346985624	0.944950242421639	0.771456580515218	0.273609871210197	3.53418706206545	0.0647694438315117	1
Merged-chr9-58554863-5	chr9	58554774	58554974	+	792.164307	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-13934.0	NM_133983	102657.0	Mm.5356	NM_133983	ENSMUSG00000035914	Cd276	6030411F23Rik|AU016588|B7RP-2|B7h3	CD276 antigen	protein-coding	1.00576720711205	1.41434457981593	0.591838403459902	0.582841089674548	1.12787888120956	1.53513644359491	0.803456149700685	0.58442071486495	0.495624341037529	0.752534009676704	0.998431161219273
Merged-chr18-6766851-2	chr18	6766751	6766951	+	592.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_181070, intron 1 of 6)	intron (NM_181070, intron 1 of 6)	1684.0	NM_001278447	19330.0	Mm.132802	NM_181070	ENSMUSG00000073639	Rab18	AA959686	RAB18, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81905204-4	chr15	81905112	81905312	+	963.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080633, intron 7 of 17)	Tigger20a|DNA|TcMar-Tigger	21001.0	NM_030229	78929.0	Mm.215115	NM_030229	ENSMUSG00000022476	Polr3h	5031409G22Rik|RPC8	polymerase (RNA) III (DNA directed) polypeptide H	protein-coding	3.83389062396579	3.61638259278813	3.82149451710579	3.85126105163763	2.81243914635184	4.18304153898755	3.98834619961184	4.54861595199077	0.326951386661126	0.527484579667895	0.948839578239191
Merged-chr2-38925773-2	chr2	38925673	38925873	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010264, intron 1 of 10)	CpG	688.0	NM_010264	14536.0	Mm.439703	NM_010264	ENSMUSG00000063972	Nr6a1	1700113M01Rik|Gcnf|NCNF|RTR	nuclear receptor subfamily 6, group A, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-28833441-5	chr6	28833367	28833567	+	783.97998	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019776, intron 16 of 23)	CpG	-1720.0	NM_138682	192198.0	Mm.443660	NM_138682	ENSMUSG00000049939	Lrrc4	MBAG1|NGL-2|NGL2|NLG-2|Nag14	leucine rich repeat containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-45266318-4	chr9	45266215	45266415	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_106054)	TTS (NR_106054)	392.0	NR_106054	102466803.0		NR_106054	ENSMUSG00000098361	Mir7086	Gm27643|mmu-mir-7086	microRNA 7086	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84977721-6	chr8	84977611	84977811	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008416, exon 1 of 1)	exon (NM_008416, exon 1 of 1)	1037.0	NM_008416	16477.0	Mm.1167	NM_008416	ENSMUSG00000052837	Junb	-	jun B proto-oncogene	protein-coding	5.51822391378874	5.69000253952563	5.96087644235329	5.78374353291803	5.29697333554016	5.17123609344323	6.43633375677499	5.98689891421829	0.0830275814154789	0.783806899946714	0.998431161219273
Merged-chr11-86257591-4	chr11	86257514	86257714	+	990.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027421)	promoter-TSS (NM_027421)	-46.0	NM_027421	70422.0	Mm.171304	NM_027421	ENSMUSG00000018068	Ints2	2810417D08Rik|AA408260|AI987735|mKIAA1287	integrator complex subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120720069-4	chr8	120719966	120720166	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16292.0	NM_008320	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80695373-4	chr10	80695271	80695471	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172457, intron 1 of 3)	intron (NM_172457, intron 1 of 3)	6449.0	NM_172457	208228.0	Mm.49309	NM_172457	ENSMUSG00000003348	Mob3a	5330417K06Rik|A630029F06|AV218468|Mobkl2a	MOB kinase activator 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5942902-2	chr17	5942802	5943002	+	561.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_151772, intron 1 of 25)	intron (NR_151772, intron 1 of 25)	1622.0	NM_001113352	20975.0	Mm.236068	NM_011523	ENSMUSG00000023805	Synj2	AI481647|SJ2|mKIAA0348	synaptojanin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-104233290-4	chr9	104233194	104233394	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359740, intron 6 of 56)	intron (NM_001359740, intron 6 of 56)	29636.0	NM_001359740	235567.0	Mm.217256	NM_001163026	ENSMUSG00000032560	Dnajc13	D030002L11Rik|Gm1124|RME-8|Rme8|mKIAA0678	DnaJ heat shock protein family (Hsp40) member C13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-113634857-3	chr13	113634718	113634918	+	617.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR48|LTR|ERV1	-16254.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-80089438-4	chr11	80089383	80089583	+	924.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001029856)	promoter-TSS (NM_001029856)	83.0	NM_001029856	237877.0	Mm.89551	NM_001029856	ENSMUSG00000017550	Atad5	C130052G03Rik|FRAG1|Gm17	ATPase family, AAA domain containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-109777808-4	chr8	109777704	109777904	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009677)	promoter-TSS (NM_009677)	-779.0	NM_009677	11765.0	Mm.37210	NM_009677	ENSMUSG00000031731	Ap1g1	AA409002|AU041323|AW551707|Adtg|D8Ertd374e	adaptor protein complex AP-1, gamma 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-107437901-2	chr8	107437801	107438001	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025830, intron 1 of 23)	B3A|SINE|B2	1503.0	NM_025830	66894.0	Mm.390058	NM_025830	ENSMUSG00000031930	Wwp2	1300010O06Rik|AA690238|AIP2|AW554328	WW domain containing E3 ubiquitin protein ligase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141191866-2	chr7	141191766	141191966	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008284, intron 4 of 5)	intron (NM_008284, intron 4 of 5)	2138.0	NM_001130444	15461.0	Mm.334313	NM_008284	ENSMUSG00000025499	Hras	H-ras|Ha-ras|Harvey-ras|Hras-1|Hras1|Kras2|c-H-ras|c-Ha-ras|c-rasHa|ras	Harvey rat sarcoma virus oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-36022506-2	chr17	36022406	36022606	+	896.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_015618, intron 1 of 1)	RLTR13C2|LTR|ERVK	-1946.0	NM_008207	15042.0	Mm.439654	NM_008207	ENSMUSG00000053835	H2-T24	H-2T24	histocompatibility 2, T region locus 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-8851582-2	chr9	8851482	8851682	+	578.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-48251.0	NM_008829	18667.0	Mm.12798	NM_008829	ENSMUSG00000031870	Pgr	9930019P03Rik|BB114106|NR3C3|PR|PR-A|PR-B	progesterone receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80260470-3	chr10	80260373	80260573	+	866.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010255, intron 1 of 5)	intron (NM_010255, intron 1 of 5)	539.0	NM_001347119	14431.0	Mm.7329	NM_010255	ENSMUSG00000020150	Gamt	AA571402|Spintz1	guanidinoacetate methyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-63411938-8	chr14	63411830	63412030	+	932.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007549, intron 1 of 12)	intron (NM_007549, intron 1 of 12)	5257.0	NM_007549	12143.0	Mm.3962	NM_007549	ENSMUSG00000014453	Blk	-	B lymphoid kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-13743733-2	chr17	13743633	13743833	+	635.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_022311, intron 1 of 2)	intron (NM_022311, intron 1 of 2)	-16808.0	NR_151731	17356.0	Mm.59167	NM_010806	ENSMUSG00000068036	Afdn	5033403D15Rik|AF6|Af-6|Afadin|Gm314|I-afadin|Mllt4|S-afadin	afadin, adherens junction formation factor	protein-coding	0.864755746838189	1.69353445731213	1.96254723575709	0.890888039762016	0.868715530078214	1.70769426081939	1.9802652953954	1.58719387834961	0.444222533164196	0.742459520136312	0.998431161219273
Merged-chr13-38528897-3	chr13	38528800	38529000	+	872.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145367)	promoter-TSS (NM_145367)	-76.0	NM_001289598	105245.0	Mm.28622	NM_145367	ENSMUSG00000038991	Txndc5	AL022641|ERp46|PC-TRP	thioredoxin domain containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-39205452-4	chr6	39205311	39205511	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033430, intron 1 of 19)	intron (NM_001033430, intron 1 of 19)	1362.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56076036-1	chr17	56075936	56076136	+	540.0	f1_balb.idr	intron (NM_024432, intron 1 of 11)	B2_Mm2|SINE|B2	3297.0	NM_024432	66530.0	Mm.28000	NM_024432	ENSMUSG00000019578	Ubxn6	1200008L11Rik|2210415J11Rik|AU040909|Ubxd1|Ubxdc2	UBX domain protein 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100150606-4	chr7	100150546	100150746	+	950.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8631.0	NM_026010	67164.0	Mm.46777	NM_026010	ENSMUSG00000030725	Lipt2	2610209A20Rik	lipoyl(octanoyl) transferase 2 (putative)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-85276129-1	chr1	85276029	85276229	+	898.0	f1_balb.idr	Intergenic	Intergenic	-5563.0	NM_001037909	620078.0	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik	RIKEN cDNA C130026I21 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-25201519-2	chr19	25201419	25201619	+	590.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028785, exon 48 of 48)	3' UTR (NM_028785, exon 48 of 48)	-35456.0	NM_181404	107351.0	Mm.260722	NM_181404	ENSMUSG00000032702	Kank1	A930031B09Rik|AU015049|AW121052|Ankrd15|D330024H06Rik|mKIAA0172	KN motif and ankyrin repeat domains 1	protein-coding	0.479735114808493	0.712042901377318	0.406962745019912	0.236122030360165	0.48616916218685	0.721317037860172	0.411635719466132	0.23687823001862	0.0401585578239949	0.98179293386956	1
Merged-chr19-4201282-2	chr19	4201182	4201382	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011237, intron 2 of 10)	intron (NM_011237, intron 2 of 10)	321.0	NM_011237	19367.0	Mm.277629	NM_011237	ENSMUSG00000024824	Rad9a	Rad9	RAD9 checkpoint clamp component A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-118403588-2	chr13	118403447	118403647	+	740.0	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16295.0	NM_021556	59054.0	Mm.143810	NM_021556	ENSMUSG00000021731	Mrps30	2610020A16Rik|AA968347|PAP|Pdcd9	mitochondrial ribosomal protein S30	protein-coding	0.0711559630582832	1.47094786538107	0.0976726940614043	1.31856476220618	0.0736919201186001	0.112732301048201	0.10042328970114	0.0896280979314462	-4.69577911460871	0.167148086278617	0.633286287152144
Merged-chr9-3335579-4	chr9	3335476	3335676	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026303, intron 1 of 11)	intron (NM_026303, intron 1 of 11)	345.0	NM_026303	67667.0	Mm.116968	NM_026303	ENSMUSG00000025899	Alkbh8	4930562C03Rik|8030431D03Rik|9430088N01Rik|Abh8	alkB homolog 8, tRNA methyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55781862-4	chr19	55781772	55781972	+	815.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001331146, intron 4 of 14)	intron (NM_001331146, intron 4 of 14)	40062.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.832190873911164	0.314521849060244	0.476932914418669	0.593703981934983	0.757650502624936	0.31589044651171	0.752574752166622	0.304606347915704	-0.0960710844818055	0.957639662163673	1
Merged-chr8-86872306-4	chr8	86872205	86872405	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030563, intron 1 of 6)	intron (NM_030563, intron 1 of 6)	12953.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-102825045-1	chr2	102824945	102825145	+	573.0	f0_c57.idr	intron (NM_001039150, intron 11 of 13)	MTD|LTR|ERVL-MaLR	76620.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	0.0126032983512521	-0.216193599219373	0.0762974562709784	-0.222802465938686	-0.226828456164824	-0.215346702224073	0.0830616484703609	0.169202991202318	0.446268385858347	0.8455579503809	1
Merged-chr17-22623139-2	chr17	22623039	22623239	+	551.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21991.0	NM_001104575	628185.0	Mm.390947	NM_001104575	ENSMUSG00000094921	Vmn2r112	EG628185|V2rp1	vomeronasal 2, receptor 112	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-168556276-4	chr2	168556181	168556381	+	995.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037177, intron 3 of 6)	intron (NM_001037177, intron 3 of 6)	34084.0	NM_001291178	18019.0	Mm.116802	NM_010899	ENSMUSG00000027544	Nfatc2	AI607462|NF-ATc2|NF-ATp|NFAT1|NFAT1-D|Nfatp	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-21159858-3	chr10	21159759	21159959	+	660.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198914, intron 1 of 15)	CpG	1125.0	NM_001198914	17863.0	Mm.52109	NM_010848	ENSMUSG00000019982	Myb	AI550390|M16449|c-myb	myeloblastosis oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-81571237-4	chr7	81571156	81571356	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001004185)	promoter-TSS (NM_001004185)	-36.0	NM_001004185	434204.0	Mm.181641	NM_001004185	ENSMUSG00000045795	Whamm	BB081391|Whdc1|mKIAA1971	WAS protein homolog associated with actin, golgi membranes and microtubules	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43672285-4	chr4	43672174	43672374	+	889.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355718, intron 1 of 11)	intron (NM_001355718, intron 1 of 11)	3303.0	NM_001355718	242409.0	Mm.171489	NM_001085508	ENSMUSG00000078716	Tmem8b	4930500O05Rik	transmembrane protein 8B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101758750-3	chr11	101758665	101758865	+	742.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144831, intron 18 of 22)	intron (NM_144831, intron 18 of 22)	25809.0	NM_144831	217207.0	Mm.28186	NM_144831	ENSMUSG00000034931	Dhx8	Ddx8|mDEAH6|mKIAA4096	DEAH (Asp-Glu-Ala-His) box polypeptide 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-28648956-2	chr19	28648856	28649056	+	614.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175459, intron 2 of 10)	intron (NM_175459, intron 2 of 10)	-29268.0	NR_045330	320176.0	Mm.406716	NR_045330	ENSMUSG00000097735	D930032P07Rik	-	RIKEN cDNA D930032P07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-46888239-2	chr8	46888139	46888339	+	590.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-98648.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101267623-4	chr15	101267551	101267751	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010444, intron 1 of 6)	intron (NM_010444, intron 1 of 6)	805.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	3.36965163970119	3.62291839055404	3.76646219215149	2.75640687661086	2.74455580763269	3.40061553931331	3.45603678152659	2.13564428011326	-0.648219572803346	0.316292838062331	0.819157030739355
Merged-chr2-167381827-4	chr2	167381716	167381916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32638.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-99088432-4	chr10	99088338	99088538	+	873.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18644.0	NM_027740	382406.0	Mm.440656	NM_027740	ENSMUSG00000019952	Poc1b	4933430F16Rik|Wdr51b	POC1 centriolar protein B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75454649-4	chr11	75454551	75454751	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138950)	promoter-TSS (NM_138950)	66.0	NM_138950	192652.0	Mm.340378	NM_138950	ENSMUSG00000045374	Wdr81	BC054822|Gm883|mFLJ00182|nur5	WD repeat domain 81	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47777123-2	chr17	47777023	47777223	+	702.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161723, intron 1 of 8)	intron (NM_001161723, intron 1 of 8)	-8621.0	NM_011549	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-112685024-2	chr12	112684924	112685124	+	699.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CCA)n|Simple_repeat|Simple_repeat	6184.0	NM_001100460	382639.0	Mm.11350	NM_001100460	ENSMUSG00000037638	Zbtb42	EG382639|Gm5188|simiRP58	zinc finger and BTB domain containing 42	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-47785964-2	chr17	47785864	47786064	+	648.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_011549, exon 1 of 8)	exon (NM_011549, exon 1 of 8)	220.0	NM_011549	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-66887015-4	chr9	66886957	66887157	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	32648.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-9266113-6	chr5	9266024	9266224	+	811.944458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359887)	promoter-TSS (NM_001359887)	6.0	NM_001359887	231014.0	Mm.130063	NM_172706	ENSMUSG00000056004	9330182L06Rik	Eig121l	RIKEN cDNA 9330182L06 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70467272-2	chr11	70467172	70467372	+	559.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7288.0	NM_023158	66102.0	Mm.425692	NM_023158	ENSMUSG00000018920	Cxcl16	0910001K24Rik|AV290116|BB024863|CXCL16v1|CXCL16v2|SR-PSOX|Zmynd15|b2b498Clo	chemokine (C-X-C motif) ligand 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-45652006-2	chr17	45651906	45652106	+	999.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013767, intron 3 of 21)	MLT1F1|LTR|ERVL-MaLR	7303.0	NM_001013767	268958.0	Mm.426026	NM_001013767	ENSMUSG00000058626	Capn11	-	calpain 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-81811404-4	chr15	81811321	81811521	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017376)	promoter-TSS (NM_017376)	7.0	NM_017376	21685.0	Mm.270278	NM_017376	ENSMUSG00000022389	Tef	2310028D20Rik	thyrotroph embryonic factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-152159344-3	chr4	152159236	152159436	+	762.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301805, intron 1 of 4)	intron (NM_001301805, intron 1 of 4)	469.0	NM_008236	15206.0	Mm.57038	NM_008236	ENSMUSG00000028940	Hes2	HES-2	hes family bHLH transcription factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-23115615-1	chr5	23115515	23115715	+	721.5	f0_balb.idr	intron (NM_029990, intron 2 of 2)	RLTR11A|LTR|ERVK	318738.0	NR_040469	269630.0	Mm.425231	NR_040469	ENSMUSG00000073147	5031425E22Rik	-	RIKEN cDNA 5031425E22 gene	ncRNA	0.809345889042945	1.17061954121922	1.34278582942035	0.844589900460117	2.38896678095325	2.14427899641364	2.3342680143771	0.848171004978279	3.31306815085336	0.013870099017526	0.137607592071893
Merged-chr15-88201630-2	chr15	88201468	88201668	+	681.5	f0_balb.idr|f1_balb.idr	Intergenic	RSINE1|SINE|B4	-113306.0	NR_045281	328579.0	Mm.146839	NR_045281	ENSMUSG00000116331	B230214G05Rik	B230214G05	RIKEN cDNA B230214G05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-174343032-2	chr2	174342932	174343132	+	701.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077507, intron 4 of 10)	intron (NM_001077507, intron 4 of 10)	12943.0	NM_001077510	14683.0	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-110666114-4	chr9	110666016	110666216	+	856.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028312, intron 1 of 6)	intron (NM_028312, intron 1 of 6)	9613.0	NM_028312	72654.0	Mm.249115	NM_028312	ENSMUSG00000019659	Ccdc12	2700094L05Rik|C76605	coiled-coil domain containing 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-61094751-2	chr18	61094651	61094851	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	-10821.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	-1.56355737717652	-1.81244775989375	-1.82128546162293	-1.82854501295842	-1.83962066705452	-1.81053259306168	-1.81928479966835	-1.82724555674025	-1.28500227969968	0.715751224811686	1
Merged-chr4-134556126-1	chr4	134556026	134556226	+	556.0	f1_c57bl6.idr	Intergenic	Intergenic	-3960.0	NM_029100	74777.0	Mm.29773	NM_029100	ENSMUSG00000050989	Selenon	1110019I12Rik|AI414492|SelN|Sepn1	selenoprotein N	protein-coding	1.89938994814767	1.15413285294834	1.81705701917528	1.93754171126766	1.47004090757316	0.920494996065914	1.12807339729335	0.88858187654704	-2.27896772186484	0.078852923089355	0.427444595433471
Merged-chr14-25735592-4	chr14	25735502	25735702	+	873.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001101433, intron 2 of 3)	intron (NM_001101433, intron 2 of 3)	33254.0	NM_001101433	71918.0	Mm.41904	NM_001101433	ENSMUSG00000055538	Zcchc24	2310047A01Rik	zinc finger, CCHC domain containing 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-101753827-4	chr5	101753709	101753909	+	829.779175	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	-11321.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-62431299-2	chr10	62431199	62431399	+	655.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359806, intron 13 of 14)	intron (NM_001359806, intron 13 of 14)	-8842.0	NM_145419	216019.0	Mm.213213	NM_145419	ENSMUSG00000020080	Hkdc1	BC016235	hexokinase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19938212-2	chr7	19938112	19938312	+	583.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_027308, exon 5 of 5)	3' UTR (NM_027308, exon 5 of 5)	12531.0	NM_027308	70080.0	Mm.98583	NM_027308	ENSMUSG00000040498	Igsf23	2210010C17Rik	immunoglobulin superfamily, member 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-29394305-4	chr17	29394185	29394385	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33371.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	5.07691371857592	3.89480941092127	4.44914350736129	4.48137521593612	4.76803802098548	4.73111481271593	5.04504626713732	4.59509744464928	0.294529728446987	0.43941271317923	0.909130714404946
Merged-chr11-94118827-3	chr11	94118753	94118953	+	921.511108	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025428, intron 26 of 26)	intron (NM_001025428, intron 26 of 26)	74648.0	NM_001025429	70834.0	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-60889264-3	chr19	60889149	60889349	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018869)	promoter-TSS (NM_018869)	-500.0	NM_018869	14773.0	Mm.279400	NM_018869	ENSMUSG00000003228	Grk5	Gprk5	G protein-coupled receptor kinase 5	protein-coding	3.72313517836814	3.15965947711252	4.58073676541826	3.79006413918051	3.87032196961335	3.31607076546154	4.96432986163429	3.40808314149127	0.216684036066106	0.698854361911127	0.998284579433352
Merged-chr9-96644226-2	chr9	96644127	96644327	+	886.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB3|LINE|L1	-12724.0	NM_053268	114713.0	Mm.124502	NM_053268	ENSMUSG00000032413	Rasa2	5430433H21Rik|AA517451|AU023900|GAP1m	RAS p21 protein activator 2	protein-coding	-0.136204133368272	-0.384582189830647	-0.388534624478979	-0.391577737921556	-0.129866029077555	-0.383689983211087	0.280978734940334	-0.391046509458698	1.94774573075171	0.443678043054902	1
Merged-chr18-82902738-4	chr18	82902656	82902856	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8123.0	NM_183033	329003.0	Mm.326526	NM_183033	ENSMUSG00000058881	Zfp516	C330029B10Rik|D230016L03|Zfp26l|Znf516|mKIAA0222	zinc finger protein 516	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46588094-4	chr19	46588058	46588258	+	833.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053196, intron 5 of 11)	intron (NM_053196, intron 5 of 11)	-10948.0	NM_001177812	226178.0	Mm.329895	NM_146099	ENSMUSG00000047731	Wbp1l	D19Wsu162e|Opal1	WW domain binding protein 1 like	protein-coding	0.071911696276759	0.634033215836555	0.103672351135434	0.345101722721139	0.0749735040661128	1.94994010417276	0.106935895666273	0.349820163286301	2.48498443751403	0.168834239217287	0.63531908954007
Merged-chr15-27630010-4	chr15	27629907	27630107	+	842.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013792, intron 1 of 6)	(TG)n|Simple_repeat|Simple_repeat	686.0	NM_001013792	432940.0	Mm.309164	NM_001013792	ENSMUSG00000046034	Otulin	C79097|Fam105b|m3Sapc|m7-1Sapc	OTU deubiquitinase with linear linkage specificity	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-124740148-2	chr2	124740048	124740248	+	794.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	86567.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-84837098-1	chr4	84836998	84837198	+	551.0	f0_balb.idr	Intergenic	Intergenic	-47211.0	NM_175275	338349.0	Mm.440562	NM_175275	ENSMUSG00000038070	Cntln	AI448092|B430108F07Rik|D530005L17Rik	centlein, centrosomal protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-23747871-2	chr17	23747670	23747870	+	803.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1466.0	NR_015472	638247.0	Mm.382600	NR_015472	ENSMUSG00000097006	9530082P21Rik	E030034P13Rik	RIKEN cDNA 9530082P21 gene	ncRNA	0.564663721920384	1.07242158340513	0.43099233551015	0.978361516954447	0.415827522802678	0.9583443923345	0.432778424277181	0.873632968271009	-0.52050111587252	0.761209584518393	1
Merged-chr4-126554665-4	chr4	126554571	126554771	+	906.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(A)n|Simple_repeat|Simple_repeat	-2309.0	NM_175554	269582.0	Mm.243962	NM_175554	ENSMUSG00000042489	Clspn	B130025E01|C85083|E130314M08Rik	claspin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-54732417-2	chr9	54732317	54732517	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025376, intron 1 of 10)	Tigger17a|DNA|TcMar-Tigger	2132.0	NM_023191	66317.0	Mm.28437	NM_023191	ENSMUSG00000061559	Wdr61	2700038L12Rik|2810418I05Rik|REC14	WD repeat domain 61	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-30830991-2	chr3	30830891	30831091	+	750.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A2|LTR|ERVL-MaLR	-24959.0	NM_001134386	71862.0	Mm.272019	NM_027965	ENSMUSG00000037661	Gpr160	1700025D19Rik|GPCR150	G protein-coupled receptor 160	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-118152202-4	chr4	118152088	118152288	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161823, intron 12 of 21)	intron (NM_001161823, intron 12 of 21)	-17242.0	NM_001161774	20441.0	Mm.251002	NM_009176	ENSMUSG00000028538	St3gal3	ST3GalIII|ST3N|Siat3|Siat6	ST3 beta-galactoside alpha-2,3-sialyltransferase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128188664-3	chr10	128188520	128188720	+	723.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6015.0	NM_001285777	216456.0	Mm.30102	NM_001033264	ENSMUSG00000044005	Gls2	A330074B06Rik|AI195532|GA|GLS|Lga	glutaminase 2 (liver, mitochondrial)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-49965799-4	chr16	49965719	49965919	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9989.0	NR_153658	100503490.0	Mm.72499	NR_153658		Gm19723	-	predicted gene, 19723	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6948475-2	chr19	6948375	6948575	+	776.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285453, intron 2 of 3)	intron (NM_001285453, intron 2 of 3)	5913.0	NM_001285453	12015.0	Mm.4387	NM_007522	ENSMUSG00000024959	Bad	AI325008|Bbc2	BCL2-associated agonist of cell death	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117312553-2	chr11	117312453	117312653	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113486, intron 3 of 11)	intron (NM_001113486, intron 3 of 11)	-19162.0	NM_017380	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-20008282-5	chr4	20008197	20008397	+	797.840027	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001317723)	promoter-TSS (NM_001317723)	-32.0	NM_015767	50500.0	Mm.24375	NM_015767	ENSMUSG00000073988	Ttpa	alpha-TTP	tocopherol (alpha) transfer protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-43656688-4	chr11	43656594	43656794	+	912.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25304.0	NM_027557	70802.0	Mm.397449	NM_027557	ENSMUSG00000044950	Pwwp2a	4631424J17Rik|AI891583|AU024105|D930040F23Rik	PWWP domain containing 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-28502959-2	chr2	28502859	28503059	+	736.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_139197, intron 5 of 6)	intron (NM_139197, intron 5 of 6)	6068.0	NM_139197	227671.0	Mm.484270	NM_139197	ENSMUSG00000026829	Gbgt1	Fgs|Fs	globoside alpha-1,3-N-acetylgalactosaminyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-45827255-2	chr2	45827155	45827355	+	654.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	130650.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-120817138-3	chr9	120817087	120817287	+	762.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	98063.0	NR_040742	76402.0	Mm.436588	NR_040742	ENSMUSG00000100146	1700020M21Rik	-	RIKEN cDNA 1700020M21 gene	ncRNA	-0.0799339104373747	-0.0548833407561	-0.0629556629380855	-0.0692712600055772	0.103863699464105	-0.0530807952590995	1.18547533951003	0.450964513645021	4.32533689753128	0.0383053731213341	1
Merged-chr15-83010728-2	chr15	83010628	83010828	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028728, intron 3 of 5)	intron (NM_028728, intron 3 of 5)	12410.0	NM_028728	74039.0	Mm.32584	NM_028728	ENSMUSG00000058099	Nfam1	4921501M20Rik|Cnaip	Nfat activating molecule with ITAM motif 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-60432340-3	chr14	60432176	60432376	+	896.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	53990.0	NM_001164705	72125.0	Mm.275499	NM_028113	ENSMUSG00000021986	Amer2	2600011E07Rik|Fam123a	APC membrane recruitment 2	protein-coding	0.969615550958968	1.0125520695416	0.465822939700811	1.40629854113789	0.98091263891432	0.477453728058189	0.467927210820944	0.459719936581207	-2.04576748542919	0.244986409238276	1
Merged-chr4-133196406-2	chr4	133196279	133196479	+	973.785706	f1_balb.idr|f1_c57bl6.idr	TTS (NR_105984)	TTS (NR_105984)	724.0	NR_105984	102466215.0		NR_105984	ENSMUSG00000099202	Mir7017	Gm27945|mmu-mir-7017	microRNA 7017	ncRNA	2.65365509049996	2.54790195745222	1.3291477464461	2.48496956576133	2.3764282209224	2.03687155054155	2.37336624903085	1.5473624342516	-0.527756772437623	0.579329857848534	0.965985075107763
Merged-chr4-133669628-2	chr4	133669532	133669732	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356466, intron 2 of 3)	intron (NM_001356466, intron 2 of 3)	3015.0	NM_001145955	230801.0	Mm.217004	NM_178698	ENSMUSG00000043257	Pigv	B330013B03|D430024F16Rik	phosphatidylinositol glycan anchor biosynthesis, class V	protein-coding	1.28640377549102	0.446066504721405	1.27594452301446	0.42889850386545	1.05724841891337	0.448226032358503	0.438556764214305	0.618910933214941	-1.28140325028683	0.471871928897134	1
Merged-chr1-88231239-2	chr1	88231139	88231339	+	576.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001281466, intron 5 of 41)	L2c|LINE|L2	4219.0	NM_001281466	100040766.0	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	Heatr7b1	maestro heat-like repeat family member 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-40963155-4	chr4	40963073	40963273	+	877.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029814, intron 7 of 7)	MTC|LTR|ERVL-MaLR	-7733.0	NM_001290449	74164.0	Mm.247456	NM_023739	ENSMUSG00000028423	Nfx1	1300017N15Rik|3000003M19Rik|NFX.1|TEG-42|Tex42	nuclear transcription factor, X-box binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-17396954-3	chr19	17396802	17397002	+	700.733337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019437, intron 2 of 3)	URR1B|DNA|hAT-Charlie	2859.0	NM_019437	54391.0	Mm.7013	NM_019437	ENSMUSG00000024712	Rfk	0610038L10Rik|AF031381|KOI-4	riboflavin kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-76688076-1	chr4	76687976	76688176	+	713.0	f1_balb.idr	intron (NM_011211, intron 9 of 39)	intron (NM_011211, intron 9 of 39)	-343833.0	NM_001352628	19266.0	Mm.184021	NM_011211	ENSMUSG00000028399	Ptprd	1110002J03Rik|3000002J10Rik|B230219D21Rik|R-PTP-delta	protein tyrosine phosphatase, receptor type, D	protein-coding	-0.272930466748164	-0.258590117699094	-0.263284979657515	0.0422920413695281	-0.272034403110478	0.484802897914129	-0.262249237722796	0.0468663434090312	1.9935457963055	0.413199103335665	1
Merged-chr19-30032448-4	chr19	30032352	30032552	+	830.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144873, intron 1 of 15)	intron (NM_144873, intron 1 of 15)	1939.0	NM_144873	109113.0	Mm.313364	NM_144873	ENSMUSG00000024817	Uhrf2	2310065A22Rik|AI426270|AW214556|D130071B19Rik|Nirf	ubiquitin-like, containing PHD and RING finger domains 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-95138381-2	chr8	95138281	95138481	+	799.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_010631, intron 1 of 19)	intron (NM_010631, intron 1 of 19)	4159.0	NM_010631	16582.0	Mm.378951	NM_010631	ENSMUSG00000031788	Kifc3	AI325457|BB123200	kinesin family member C3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-151057189-4	chr5	151057086	151057286	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153382, intron 7 of 13)	intron (NR_153382, intron 7 of 13)	104579.0	NM_013823	16591.0	Mm.6500	NM_013823	ENSMUSG00000058488	Kl	alpha-kl	klotho	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-81663143-1	chr17	81663043	81663243	+	722.0	f0_balb.idr	intron (NR_104580, intron 1 of 8)	intron (NR_104580, intron 1 of 8)	75244.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-48108825-4	chr4	48108720	48108920	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16099.0	NM_026343	67727.0	Mm.171334	NM_026343	ENSMUSG00000061455	Stx17	4833418L03Rik|6330411F21Rik|9030425C21Rik|AW048351	syntaxin 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-95822196-4	chr15	95822074	95822274	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 1 of 19)	intron (NM_175344, intron 1 of 19)	7898.0	NR_155277	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-45414089-2	chr8	45413989	45414189	+	604.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3470.0	NM_126166	142980.0	Mm.33874	NM_126166	ENSMUSG00000031639	Tlr3	AI957183	toll-like receptor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-46161854-4	chr17	46161751	46161951	+	725.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357745)	promoter-TSS (NM_001357745)	-213.0	NM_001357745	56055.0	Mm.22147	NM_019581	ENSMUSG00000023952	Gtpbp2	nmf205	GTP binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-37995665-2	chr13	37995560	37995760	+	898.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1452.0	NM_001360842	107513.0	Mm.426670	NM_025965	ENSMUSG00000021427	Ssr1	2510001K09Rik|6330400D04|AI159733|AI452176|SSR|TRAPA	signal sequence receptor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-37906095-2	chr1	37905995	37906195	+	790.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001033427, exon 6 of 6)	3' UTR (NM_001033427, exon 6 of 6)	10398.0	NM_001033427	332427.0	Mm.332981	NM_001033427	ENSMUSG00000061584	Lyg2	Gm776	lysozyme G-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-106337114-2	chr8	106337014	106337214	+	804.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021491, intron 1 of 8)	intron (NM_021491, intron 1 of 8)	874.0	NM_021491	58994.0	Mm.23298	NM_021491	ENSMUSG00000031906	Smpd3	4631433G07Rik|AI427456|AW537966|fro|nSMase2	sphingomyelin phosphodiesterase 3, neutral	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-108382526-4	chr3	108382401	108382601	+	871.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040560, exon 2 of 3)	non-coding (NR_040560, exon 2 of 3)	1240.0	NR_040560	100038453.0	Mm.214328	NR_040560	ENSMUSG00000074281	Gm12522	-	predicted gene 12522	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-116047672-4	chr12	116047572	116047772	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001004066)	promoter-TSS (NM_001004066)	-52.0	NM_001004066	56220.0	Mm.254997	NM_019565	ENSMUSG00000042063	Zfp386	Kzf1|mKIAA4205	zinc finger protein 386 (Kruppel-like)	protein-coding	5.65187808928838	5.32612693820886	5.57350863023494	5.95200568052561	5.93555649689003	5.39714050983464	5.49711186230896	5.81902692907394	0.0441179532082378	0.869184229468277	0.998431161219273
Merged-chr15-101269647-2	chr15	101269547	101269747	+	860.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010444, intron 1 of 6)	intron (NM_010444, intron 1 of 6)	2801.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-113304792-3	chr2	113304694	113304894	+	857.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19062.0	NM_029232	75275.0	Mm.159484	NM_029232	ENSMUSG00000041255	Tmco5b	4930563P21Rik	transmembrane and coiled-coil domains 5B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-108341327-3	chr6	108341229	108341429	+	960.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 5 of 61)	intron (NM_010585, intron 5 of 61)	128233.0	NM_010585	16438.0	Mm.227912	NM_010585	ENSMUSG00000030102	Itpr1	D6Pas2|Gm10429|IP3R 1|IP3R1|InsP3R|Ip3r|Itpr-1|P400|Pcp-1|Pcp1|insP3R1|opt|wblo	inositol 1,4,5-trisphosphate receptor 1	protein-coding	1.13137475496744	1.24844433572246	2.3187086126742	1.99045642316821	2.4312659514142	1.78214967302948	3.20890508103074	2.56296045170898	1.88067343568389	0.0619788312815106	0.369672749437109
Merged-chr7-30588365-2	chr7	30588257	30588457	+	1000.0	f0_balb.idr|f0_c57.idr	exon (NM_001290573, exon 1 of 37)	exon (NM_001290573, exon 1 of 37)	369.0	NM_001290573	75410.0	Mm.168688	NM_029274	ENSMUSG00000006307	Kmt2b	2610014H22Rik|Mll2|Wbp7|mKIAA0304	lysine (K)-specific methyltransferase 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-114071660-4	chr13	114071582	114071782	+	829.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172595, intron 4 of 4)	L1MA4|LINE|L1	79910.0	NR_045836	319803.0	Mm.386896	NM_177004	ENSMUSG00000114213	A430090L17Rik	-	RIKEN cDNA A430090L17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-12314189-4	chr2	12314091	12314291	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12247.0	NM_001001309	241226.0	Mm.329997	NM_001001309	ENSMUSG00000026768	Itga8	AI447669	integrin alpha 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117778197-2	chr11	117778097	117778297	+	817.642822	f1_balb.idr|f1_c57bl6.idr	intron (NM_145439, intron 5 of 19)	intron (NM_145439, intron 5 of 19)	1451.0	NR_154387	217353.0	Mm.286963	NM_145439	ENSMUSG00000025572	Tmc6	D11Ertd204e|EVER1	transmembrane channel-like gene family 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-128663462-2	chr4	128663362	128663562	+	718.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001195130, intron 1 of 14)	B3|SINE|B2	8760.0	NM_001195130	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	2.19697630654475	1.18482007461857	1.74195220462409	2.14992756440621	2.21584194167408	1.18988683381259	1.75518526931242	2.06426876124963	-0.04426566073471	0.968120476484463	0.998431161219273
Merged-chr15-59645878-2	chr15	59645778	59645978	+	927.3333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR33A|LTR|ERVL	-2776.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122429272-2	chr8	122429172	122429372	+	813.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301284, intron 1 of 4)	B2_Mm2|SINE|B2	3668.0	NM_001301284	13057.0	Mm.271671	NM_007806	ENSMUSG00000006519	Cyba	b558|nmf333|p22-phox|p22phox	cytochrome b-245, alpha polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-7897949-4	chr17	7897856	7898056	+	982.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28044.0	NM_145968	72536.0	Mm.119680	NM_145968	ENSMUSG00000033450	Tagap	2610315E15Rik|TRD|Tcd-1|Tcd1|Tcd1a|tcs-1|tcs1	T cell activation Rho GTPase activating protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-16100687-2	chr1	16100587	16100787	+	620.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_011291)	TTS (NM_011291)	3746.0	NM_011291	19989.0	Mm.319659	NM_011291	ENSMUSG00000043716	Rpl7	Rpl7a|Surf-3	ribosomal protein L7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-38460299-4	chr16	38460180	38460380	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359898, intron 1 of 5)	intron (NM_001359898, intron 1 of 5)	1347.0	NM_009855	12519.0	Mm.89474	NM_009855	ENSMUSG00000075122	Cd80	B71|Cd28l|Ly-53|Ly53|MIC17|TSA1	CD80 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91385754-4	chr16	91385666	91385866	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347258, intron 3 of 7)	intron (NM_001347258, intron 3 of 7)	12983.0	NM_001110498	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-66848946-4	chr10	66848855	66849055	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	71429.0	NR_138560	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16239877-4	chr7	16239760	16239960	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176912, intron 1 of 1)	intron (NM_176912, intron 1 of 1)	2471.0	NM_001146005	319430.0	Mm.239570	NM_176912	ENSMUSG00000074361	C5ar2	C5L2|E030029A11Rik|Gpr77	complement component 5a receptor 2	protein-coding	1.88189512639253	3.14966140921146	1.08912968733432	1.99604684812723	1.62727071388294	1.12809905241632	2.31569625587034	1.71836620800952	-1.14295228648844	0.297662862504411	0.800257675359925
Merged-chr7-144896524-2	chr7	144896424	144896624	+	877.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008003)	promoter-TSS (NM_008003)	-8.0	NM_008003	14170.0	Mm.3904	NM_008003	ENSMUSG00000031073	Fgf15	FGF19	fibroblast growth factor 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-85408298-4	chr8	85408185	85408385	+	966.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_025722)	TTS (NM_025722)	24556.0	NR_033144	66714.0	Mm.272748	NM_025722	ENSMUSG00000036934	4921524J17Rik	-	RIKEN cDNA 4921524J17 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102371125-3	chr12	102370972	102371172	+	929.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177620, intron 6 of 9)	intron (NM_177620, intron 6 of 9)	68741.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-4772765-2	chr13	4772665	4772865	+	802.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-163601.0	NM_018859	56043.0	Mm.251908	NM_018859	ENSMUSG00000045410	Akr1e1	1810061I10Rik|Akr1e2	aldo-keto reductase family 1, member E1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-103184653-2	chr3	103184553	103184753	+	649.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	12998.0	NM_001356331	68183.0	Mm.104919	NM_026602	ENSMUSG00000005687	Bcas2	6430539P16Rik|AI132645|C76366|C80030	breast carcinoma amplified sequence 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-90457225-4	chr7	90457105	90457305	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025460)	promoter-TSS (NM_025460)	3.0	NM_025460	66271.0	Mm.28963	NM_025460	ENSMUSG00000030615	Tmem126a	1810020E01Rik	transmembrane protein 126A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-149843093-4	chr4	149843008	149843208	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC1|LINE|L1	-68841.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	3.49338221636611	3.57024722278958	1.93340555656758	2.83486146774442	3.46639863118702	3.04399255047991	2.82254966755561	3.22645832413744	0.0886579648581886	0.896319478247691	0.998431161219273
Merged-chr13-113869438-4	chr13	113869327	113869527	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172595, intron 1 of 4)	intron (NM_172595, intron 1 of 4)	74919.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-62738334-2	chr4	62738234	62738434	+	808.125	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	64360.0	NM_001310706	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59081385-6	chr15	59081293	59081493	+	836.361084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144800, intron 1 of 14)	CpG	633.0	NM_001146180	211401.0	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100692479-1	chr11	100692379	100692579	+	542.0	f0_balb.idr	Intergenic	Intergenic	11792.0	NM_030150	80861.0	Mm.271830	NM_030150	ENSMUSG00000017830	Dhx58	B430001I08Rik|D11Lgp2e|LPG2|Lgp2|RLR-3	DEXH (Asp-Glu-X-His) box polypeptide 58	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119267934-4	chr11	119267844	119268044	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159324)	promoter-TSS (NM_001159324)	-19.0	NM_001159324	14387.0	Mm.4793	NM_008064	ENSMUSG00000025579	Gaa	E430018M07Rik	glucosidase, alpha, acid	protein-coding	5.50378012550595	4.41855817897129	4.84761019160156	5.18359455461544	5.35111837891897	5.23319132481593	4.59771648646047	4.86631972661305	-0.0142155120719414	0.967682551654766	0.998431161219273
Merged-chr11-8709747-4	chr11	8709635	8709835	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MD1|LINE|L1	-45200.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-158175646-4	chr2	158175539	158175739	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16369.0	NR_036606	73399.0	Mm.416861	NR_036606	ENSMUSG00000078957	1700060C20Rik	-	RIKEN cDNA 1700060C20 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-29993551-2	chr7	29993474	29993674	+	740.75	f0_balb.idr|f1_balb.idr	intron (NM_001033355, intron 4 of 9)	intron (NM_001033355, intron 4 of 9)	9619.0	NM_001167872	243905.0	Mm.322432	NM_001033355	ENSMUSG00000074221	Zfp568	C80731|Gm1691|Znf568|chato	zinc finger protein 568	protein-coding	1.63888855374702	0.92652898552334	1.15203118517187	1.313267864671	2.60557292588501	1.41628285076264	0.909175617565979	1.96517181600718	1.80217077898349	0.146284061043705	0.596302207611226
Merged-chr19-4069916-2	chr19	4069816	4070016	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10469.0	NM_001362043	225884.0	Mm.440201	NM_144869	ENSMUSG00000058216	Gstp3	-	glutathione S-transferase pi 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69059219-1	chr11	69059119	69059319	+	1000.0	f0_c57.idr	promoter-TSS (NM_028005)	promoter-TSS (NM_028005)	-556.0	NM_028005	71923.0	Mm.340257	NM_028005	ENSMUSG00000045176	Borcs6	2310047M10Rik	BLOC-1 related complex subunit 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-67012629-3	chr14	67012486	67012686	+	878.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3709.0	NM_009761	12177.0	Mm.29820	NM_009761	ENSMUSG00000022051	Bnip3l	C86132|D14Ertd719e|Nip3L|Nix	BCL2/adenovirus E1B interacting protein 3-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-82998503-2	chr6	82998441	82998641	+	740.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_033079, intron 4 of 9)	B3|SINE|B2	34930.0	NM_010070	13448.0	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-8659327-2	chr11	8659227	8659427	+	832.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 1 of 30)	intron (NM_001083587, intron 1 of 30)	5208.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150566384-4	chr4	150566295	150566495	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 11 of 22)	intron (NM_001085492, intron 11 of 22)	85779.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-122105744-2	chr14	122105644	122105844	+	576.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_015586, intron 1 of 3)	intron (NR_015586, intron 1 of 3)	1230.0	NR_015586	319727.0	Mm.215552	NR_015586		A330035P11Rik	-	RIKEN cDNA A330035P11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-110403804-2	chr11	110403704	110403904	+	810.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356352, intron 1 of 11)	intron (NM_001356352, intron 1 of 11)	4702.0	NM_001356353	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-61846513-3	chr5	61846418	61846618	+	706.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37675.0	NM_019468	14380.0	Mm.347430	NM_019468	ENSMUSG00000089992	G6pd2	G6pdx-ps1|Gpd-2|Gpd2	glucose-6-phosphate dehydrogenase 2	protein-coding	0.184411708107995	-0.0785504317505006	-0.0842551673150762	-0.0886705166185642	-0.0949318781400519	0.444700903322022	0.721120969989415	-0.0878982612495544	2.46215944413415	0.285549913024284	1
Merged-chr5-147861454-1	chr5	147861354	147861554	+	541.0	f0_balb.idr	intron (NM_025624, intron 1 of 5)	intron (NM_025624, intron 1 of 5)	826.0	NM_025624	66537.0	Mm.332855	NM_025624	ENSMUSG00000029649	Pomp	2510048O06Rik|Ump1	proteasome maturation protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152424940-4	chr1	152424859	152425059	+	833.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177756, intron 1 of 11)	intron (NM_177756, intron 1 of 11)	25092.0	NM_177756	269132.0	Mm.23782	NM_177756	ENSMUSG00000032649	Colgalt2	AI427652|D730024P12|Glt25d2	collagen beta(1-O)galactosyltransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125145845-5	chr6	125145776	125145976	+	902.466675	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001302779, exon 1 of 9)	exon (NM_001302779, exon 1 of 9)	652.0	NM_001302779	320678.0	Mm.129415	NM_178787	ENSMUSG00000038271	Iffo1	4733401N06Rik|A930037G23Rik|HOM-TES-103|Iffo	intermediate filament family orphan 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-46442086-1	chr11	46441986	46442186	+	546.0	f0_balb.idr	3' UTR (NM_025426, exon 3 of 3)	3' UTR (NM_025426, exon 3 of 3)	5125.0	NM_025426	66213.0	Mm.24159	NM_025426	ENSMUSG00000020397	Med7	1110063B05Rik|Crsp33|Crsp9	mediator complex subunit 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100663403-4	chr7	100663270	100663470	+	996.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013746)	promoter-TSS (NM_013746)	-976.0	NM_001163182	27276.0	Mm.491216	NM_013746	ENSMUSG00000030701	Plekhb1	AI315628|PHR1|Phret1|evt-1	pleckstrin homology domain containing, family B (evectins) member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-32173107-3	chr18	32173021	32173221	+	746.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011946, intron 1 of 16)	intron (NM_011946, intron 1 of 16)	10032.0	NM_011946	26405.0	Mm.211762	NM_011946	ENSMUSG00000024383	Map3k2	9630061B06Rik|AI585793|Mekk2|Mekk2b	mitogen-activated protein kinase kinase kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-151749665-2	chr2	151749565	151749765	+	718.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_138569, intron 2 of 2)	intron (NR_138569, intron 2 of 2)	1800.0	NR_138568	75283.0	Mm.195735	NM_029235		4930556L07Rik	1700020P01Rik|4930593I08Rik	RIKEN cDNA 4930556L07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-145692269-4	chr3	145692145	145692345	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42260.0	NM_010516	16007.0	Mm.1231	NM_010516	ENSMUSG00000028195	Cyr61	AI325051|CCN1|Igfbp10	cysteine rich protein 61	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-37586314-4	chr1	37586235	37586435	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45319.0	NM_173870	269181.0	Mm.25861	NM_173870	ENSMUSG00000026110	Mgat4a	9530018I07Rik|GnT-IVa|glcNAc-T-IVa	mannoside acetylglucosaminyltransferase 4, isoenzyme A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139468637-2	chr5	139468537	139468737	+	592.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-8103.0	NM_028469	73212.0	Mm.84294	NM_028469	ENSMUSG00000053553	3110082I17Rik	AW411904	RIKEN cDNA 3110082I17 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118353767-4	chr11	118353654	118353854	+	985.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011594, intron 1 of 4)	intron (NM_011594, intron 1 of 4)	1657.0	NM_011594	21858.0	Mm.206505	NM_011594	ENSMUSG00000017466	Timp2	D11Bwg1104e|Timp-2	tissue inhibitor of metalloproteinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-113077308-4	chr6	113077196	113077396	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027008)	promoter-TSS (NR_027008)	-52.0	NR_027008	14910.0	Mm.280950	NR_027008	ENSMUSG00000086429	Gt(ROSA)26Sor	AV258896|Gtrgeo26|Gtrosa26|R26|ROSA26|Thumpd3as1	gene trap ROSA 26, Philippe Soriano	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-34378595-3	chr18	34378497	34378697	+	916.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-5182.0	NM_007874	13476.0	Mm.280075	NM_007874	ENSMUSG00000005873	Reep5	AI324241|AU022809|AW495741|DP1/TB2|Dp1|R74856|TB2/DP1	receptor accessory protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-49203411-4	chr11	49203301	49203501	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009562)	promoter-TSS (NM_009562)	-99.0	NM_001024846	22720.0	Mm.16650	NM_009562	ENSMUSG00000046311	Zfp62	-	zinc finger protein 62	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-45478234-3	chr9	45478124	45478324	+	819.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081270, intron 3 of 32)	intron (NM_001081270, intron 3 of 32)	-46992.0	NR_040732	74602.0	Mm.394117	NR_040732	ENSMUSG00000097074	4833428L15Rik	-	RIKEN cDNA 4833428L15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135582574-4	chr5	135582480	135582680	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB8|LINE|L1	-9531.0	NM_001356630	56221.0	Mm.31505	NM_019577	ENSMUSG00000004814	Ccl24	CKb-6|MPIF-2|Scya24	chemokine (C-C motif) ligand 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-117242878-2	chr13	117242778	117242978	+	788.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010330, intron 2 of 8)	intron (NM_010330, intron 2 of 8)	22305.0	NM_010330	13723.0	Mm.274926	NM_010330	ENSMUSG00000021728	Emb	AL022799|Gp70	embigin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-65671633-3	chr6	65671526	65671726	+	848.8444210000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172399)	promoter-TSS (NM_172399)	15.0	NM_172399	68169.0	Mm.52392	NM_172399	ENSMUSG00000049001	Ndnf	A930038C07Rik|epidermacan	neuron-derived neurotrophic factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-60277062-2	chr10	60276962	60277162	+	653.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146120)	promoter-TSS (NM_001146120)	-566.0	NM_001146123	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-9092908-2	chr13	9092808	9093008	+	781.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311117)	promoter-TSS (NM_001311117)	-973.0	NM_001311117	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-7270229-3	chr9	7270109	7270309	+	752.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2305.0	NM_008607	17386.0	Mm.5022	NM_008607	ENSMUSG00000050578	Mmp13	Clg|MMP-13|Mmp1	matrix metallopeptidase 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-88345583-2	chr17	88345487	88345687	+	745.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-95117.0	NM_001355743	14236.0	Mm.112824	NM_180974	ENSMUSG00000034998	Foxn2	3230402J05Rik|6030465J18Rik|Fkh19|Foxn1|HTLF	forkhead box N2	protein-coding	3.27721762121733	2.55609113261545	3.54168139021843	2.63251562615108	2.28522959660232	2.42496578629387	2.6164239384454	1.43374464415473	-1.58793663270745	0.0450770352533211	0.305272148305001
Merged-chr3-83080939-4	chr3	83080841	83081041	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	25403.0	NM_016784	53317.0	Mm.286349	NM_016784	ENSMUSG00000027998	Plrg1	AA958940|C80566|Tango4	pleiotropic regulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-38002269-3	chr7	38002179	38002379	+	640.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011274, intron 1 of 10)	intron (NM_011274, intron 1 of 10)	17273.0	NM_011274	19777.0	Mm.387220	NM_011274	ENSMUSG00000030421	Uri1	C80913|NNX3|Rmp	URI1, prefoldin-like chaperone	protein-coding	0.952662314377472	1.46373306533341	0.680793805229882	1.00476071705791	1.18792288228138	0.906854455225972	0.68315417661257	1.45663763938688	0.164252825410024	0.90996581824455	0.998431161219273
Merged-chr14-120762395-4	chr14	120762233	120762433	+	977.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-148861.0	NM_023579	70572.0	Mm.221452	NM_023579	ENSMUSG00000030662	Ipo5	1110011C18Rik|5730478E03Rik|AA409333|C76941|IMB3|Kpnb3|Ranbp5|imp5	importin 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-38409968-4	chr18	38409818	38410018	+	869.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8989.0	NM_022996	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-40217792-3	chr12	40217693	40217893	+	675.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013562, intron 1 of 11)	intron (NM_013562, intron 1 of 11)	5018.0	NR_035459	100316693.0		NR_035459	ENSMUSG00000089371	Mir1938	mir-1938|mmu-mir-1938	microRNA 1938	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-117614484-2	chr5	117614384	117614584	+	631.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001312914, intron 4 of 19)	intron (NM_001312914, intron 4 of 19)	200482.0	NM_001312914	333050.0	Mm.437947	NM_001034873	ENSMUSG00000061578	Ksr2	-	kinase suppressor of ras 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-40137383-2	chr10	40137283	40137483	+	565.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 1 of 5)	intron (NM_001114332, intron 1 of 5)	4871.0	NM_028247	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-69917284-2	chr8	69917184	69917384	+	707.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286450, intron 6 of 12)	intron (NM_001286450, intron 6 of 12)	-14726.0	NM_023312	67184.0	Mm.21162	NM_023312	ENSMUSG00000036199	Ndufa13	2700054G14Rik|AU022060|CDA016|CGI-39|GRIM-19|Grim19	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-118849712-1	chr7	118849612	118849812	+	640.0	f1_c57bl6.idr	intron (NM_001168219, intron 2 of 3)	intron (NM_001168219, intron 2 of 3)	5901.0	NM_001168220	66356.0	Mm.482278	NM_023197	ENSMUSG00000030980	Knop1	2310008H09Rik|Tsg118	lysine rich nucleolar protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-33150933-2	chr15	33150833	33151033	+	723.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_176073, intron 1 of 7)	L1_Mus3|LINE|L1	67804.0	NM_176073	54381.0	Mm.158251	NM_018755	ENSMUSG00000039007	Cpq	1190003P12Rik|2610034C17Rik|Hls2|Lal-1|Pgcp	carboxypeptidase Q	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59375062-4	chr15	59374993	59375193	+	694.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153548)	promoter-TSS (NM_153548)	895.0	NM_001164604	68501.0	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153633417-1	chr2	153633317	153633517	+	1000.0	f1_c57bl6.idr	promoter-TSS (NM_001195390)	promoter-TSS (NM_001195390)	-636.0	NM_133850	99311.0	Mm.294478	NM_133850	ENSMUSG00000056941	Commd7	2310010I22Rik|AW060956|mU3	COMM domain containing 7	protein-coding	-1.53362919331644	-1.50201671710775	-1.51157659084044	-1.08120497225282	-1.53141005593807	-1.49994505258991	-1.50941244497383	-1.51802371459528	-1.94474658522739	0.577200604274218	1
Merged-chr11-75585307-4	chr11	75585203	75585403	+	909.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2776.0	NM_008850	18738.0	Mm.3128	NM_008850	ENSMUSG00000017781	Pitpna	Pitpn|vb|vibrator	phosphatidylinositol transfer protein, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-73376332-2	chr7	73376232	73376432	+	736.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040324)	promoter-TSS (NR_040324)	-558.0	NR_040324	319783.0	Mm.349813	NR_040324	ENSMUSG00000097756	A730056A06Rik	C76391	RIKEN cDNA A730056A06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-81320898-2	chr7	81320798	81320998	+	775.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008803, intron 17 of 21)	intron (NM_008803, intron 17 of 21)	24336.0	NM_009092	20068.0	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-46123785-2	chr4	46123685	46123885	+	923.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355375, intron 6 of 9)	intron (NM_001355375, intron 6 of 9)	14690.0	NM_173033	272027.0	Mm.249594	NM_173033	ENSMUSG00000035495	Tstd2	3010020C06	thiosulfate sulfurtransferase (rhodanese)-like domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-66919769-4	chr9	66919693	66919893	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173413)	promoter-TSS (NM_173413)	-88.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-27172399-3	chr8	27172360	27172560	+	792.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029423, intron 1 of 4)	intron (NM_029423, intron 1 of 4)	2186.0	NM_029423	75767.0	Mm.205335	NM_029423	ENSMUSG00000031488	Rab11fip1	2010200K21Rik|4833414G05Rik|Rcp	RAB11 family interacting protein 1 (class I)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-65881244-4	chr5	65881111	65881311	+	593.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081105, intron 1 of 2)	intron (NM_001081105, intron 1 of 2)	17642.0	NM_001081105	74734.0	Mm.20323	NM_001081105	ENSMUSG00000029204	Rhoh	5830400A04Rik|AU019774|Arhh	ras homolog family member H	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-12230371-4	chr15	12230280	12230480	+	998.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356498, intron 2 of 15)	intron (NM_001356498, intron 2 of 15)	25352.0	NM_172958	268783.0	Mm.54460	NM_172958	ENSMUSG00000039458	Mtmr12	3Pap|4932703C11|C730015A02Rik|Pip3ap|mKIAA1682	myotubularin related protein 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-3198742-7	chr11	3198761	3198961	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6B|LTR|ERVK	-3492.0	NM_001166548	74203.0	Mm.255649	NM_023743	ENSMUSG00000020454	Eif4enif1	2610509L04Rik|A930019J01Rik|AA410001|AU021239|Clast4|D11Ertd166e	eukaryotic translation initiation factor 4E nuclear import factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-121077357-4	chr6	121077217	121077417	+	823.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001270475, intron 1 of 31)	intron (NM_001270475, intron 1 of 31)	4310.0	NM_153396	194401.0	Mm.122399	NM_153396	ENSMUSG00000051586	Mical3	C130040D16Rik|Mical-3|mKIAA1364	microtubule associated monooxygenase, calponin and LIM domain containing 3	protein-coding	3.46026109697754	3.6437205492828	3.26204555820345	2.96084439913326	3.71871116850142	3.29629701151866	4.11105362651041	2.72522772332118	0.327682115191096	0.573714130547323	0.964527909969019
Merged-chr4-46411748-3	chr4	46411654	46411854	+	911.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7571.0	NM_053149	93966.0	Mm.25793	NM_053149	ENSMUSG00000028332	Hemgn	4921524M03Rik|AI317176|EDAG|Hgn|mNDR	hemogen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-153973629-3	chr3	153973520	153973720	+	900.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001081263, exon 1 of 22)	5' UTR (NM_001081263, exon 1 of 22)	184.0	NM_001081263	242259.0	Mm.239962	NM_001081263	ENSMUSG00000028360	Slc44a5	AA117069|Gm422	solute carrier family 44, member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-53258738-2	chr18	53258638	53258838	+	584.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029394, intron 1 of 6)	intron (NM_029394, intron 1 of 6)	13076.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-82840158-3	chr1	82840057	82840257	+	842.7999880000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310713, intron 1 of 11)	CpG	697.0	NM_001347077	15463.0	Mm.392569	NM_010472	ENSMUSG00000026159	Agfg1	AU045498|C130049H11Rik|C85612|D730048C23Rik|Hrb|RAB|Rip	ArfGAP with FG repeats 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-8887337-3	chr10	8887211	8887411	+	701.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-1241.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	-0.463792974921799	-0.602186254780073	-0.606121779139294	-0.609162675426911	-0.459698143633645	-0.601300044104547	0.198416202760725	-0.608631153007492	2.61004847724149	0.316169418323442	1
Merged-chr8-47947762-3	chr8	47947656	47947856	+	908.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133791, intron 1 of 22)	intron (NM_133791, intron 1 of 22)	42795.0	NM_133791	52357.0	Mm.235074	NM_133791	ENSMUSG00000031563	Wwc2	5330431C14Rik|AU022508|C85457|D8Ertd594e	WW, C2 and coiled-coil domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-64342645-3	chr15	64342548	64342748	+	790.133362	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 2 of 28)	intron (NM_001276461, intron 2 of 28)	-29975.0	NM_001276463	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-68823731-2	chr5	68823631	68823831	+	858.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	517978.0	NM_175519	243043.0	Mm.234821	NM_175519	ENSMUSG00000037653	Kctd8	A730087N02Rik	potassium channel tetramerisation domain containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-83532060-1	chr9	83531960	83532160	+	621.5	f1_balb.idr	Intergenic	RMER1B|Other|Other	-16278.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	-0.167341589456234	-0.548080973142959	-0.552201229435791	-0.555386106806356	-0.559895788610116	0.215026234991939	-0.551291727889436	-0.554829337590097	1.29233797769222	0.642426013499726	1
Merged-chr12-100396867-4	chr12	100396770	100396970	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033213, intron 9 of 19)	L1MB7|LINE|L1	120261.0	NR_045741	100038713.0	Mm.470751	NR_045741	ENSMUSG00000113679	Gm10432	-	predicted gene 10432	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-70891578-3	chr9	70891474	70891674	+	791.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001324473, intron 1 of 8)	intron (NM_001324473, intron 1 of 8)	43234.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-101777008-2	chr2	101776900	101777100	+	941.166626	f0_c57.idr|f1_c57bl6.idr	intron (NM_001355625, intron 1 of 8)	MIRb|SINE|MIR	20707.0	NM_175181	72446.0	Mm.24138	NM_175181	ENSMUSG00000032841	Prr5l	2600010E01Rik|4833411O04Rik|Protor-2|Protor2	proline rich 5 like	protein-coding	4.85128215645152	4.94224145549554	5.22411636870261	4.77720050505751	2.41316232820278	2.60378210576035	1.72244965773003	3.63356800039762	-3.00602319732188	1.57760677032124e-08	1.75260426206613e-06
Merged-chr4-43420599-3	chr4	43420518	43420718	+	874.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037709, intron 2 of 11)	intron (NM_001037709, intron 2 of 11)	8516.0	NM_177377	329831.0	Mm.454466	NM_177377	ENSMUSG00000042788	Fam166b	4833436C18Rik	family with sequence similarity 166, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-6114686-1	chr8	6114586	6114786	+	577.5	f0_c57.idr	Intergenic	Intergenic	-1009399.0	NM_011388	20494.0	Mm.3500	NM_011388	ENSMUSG00000023073	Slc10a2	9130221J18Rik|AI605518|ASBT|IBAT|ISBT	solute carrier family 10, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-58075056-1	chr14	58074956	58075156	+	589.0	f0_balb.idr	intron (NM_013518, intron 1 of 2)	CpG	2370.0	NM_013518	14180.0	Mm.8846	NM_013518	ENSMUSG00000021974	Fgf9	Eks	fibroblast growth factor 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150213298-2	chr4	150213205	150213405	+	725.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR19|LTR|ERVK	-12170.0	NM_009802	12353.0	Mm.232523	NM_009802	ENSMUSG00000028972	Car6	Ca6|DOC1	carbonic anhydrase 6	protein-coding	-0.795614833823998	-0.786336807896898	-0.789385015939899	-0.791731170198697	-0.417731367456157	-0.784588885553199	-0.788713411686562	-0.258531662084455	3.1330601925306	0.28800364166158	1
Merged-chr16-91547556-4	chr16	91547454	91547654	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008338, intron 1 of 6)	intron (NM_008338, intron 1 of 6)	460.0	NM_008338	15980.0	Mm.249364	NM_008338	ENSMUSG00000022965	Ifngr2	Ifgr2|Ifgt	interferon gamma receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-117222086-3	chr13	117221980	117222180	+	731.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010330, intron 1 of 8)	intron (NM_010330, intron 1 of 8)	1507.0	NM_010330	13723.0	Mm.274926	NM_010330	ENSMUSG00000021728	Emb	AL022799|Gp70	embigin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-51199062-2	chr3	51198962	51199162	+	781.928589	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-25385.0	NM_009834	12457.0	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-86170598-4	chr17	86170540	86170740	+	661.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011104, intron 1 of 14)	intron (NM_011104, intron 1 of 14)	2855.0	NM_011104	18754.0	Mm.24614	NM_011104	ENSMUSG00000045038	Prkce	5830406C15Rik|PKC[e]|PKCepsilon|Pkce|R75156	protein kinase C, epsilon	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21626742-2	chr9	21626642	21626842	+	561.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357764, intron 1 of 34)	B2_Mm2|SINE|B2	10573.0	NM_001174078	20586.0	Mm.286593	NM_011417	ENSMUSG00000032187	Smarca4	BAF190A|Brg1|HP1-BP72|SNF2beta|SW1/SNF|b2b508.1Clo|b2b692Clo	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27534876-4	chr17	27534738	27534938	+	948.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21736.0	NM_001166536	15361.0	Mm.4438	NM_016660	ENSMUSG00000046711	Hmga1	AL023995|Hmga1a|Hmga1b|Hmgi|Hmgiy|Hmgy	high mobility group AT-hook 1	protein-coding	2.27640271667155	3.00910842847822	3.15245829498521	1.93063970064702	2.01765623702108	2.70911294531908	2.49173214289676	3.21679941865765	-0.00823797030432752	0.991700507356197	0.998431161219273
Merged-chr16-91073696-4	chr16	91073594	91073794	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4549.0	NM_028905	74387.0	Mm.236220	NM_028905	ENSMUSG00000039851	4932438H23Rik	4931406G06Rik|AI550392	RIKEN cDNA 4932438H23 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-22801949-2	chr8	22801840	22802040	+	702.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_029505, intron 2 of 8)	B3|SINE|B2	3714.0	NM_029505	64933.0	Mm.390023	NM_029505	ENSMUSG00000031539	Ap3m2	5830445E16Rik|AP-3B	adaptor-related protein complex 3, mu 2 subunit	protein-coding	1.90428091254653	2.79098799990863	1.91576854816563	2.44982072459395	1.78281061867242	1.99700298282003	1.28842443952238	2.70695234394496	-0.603374248406933	0.532035090163814	0.951693771382631
Merged-chr12-100883377-4	chr12	100883274	100883474	+	974.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177674, intron 2 of 2)	intron (NM_001177674, intron 2 of 2)	16150.0	NM_001177674	238377.0	Mm.32160	NM_175493	ENSMUSG00000047415	Gpr68	BB131428|Ogr1	G protein-coupled receptor 68	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-45926232-1	chr1	45926132	45926332	+	586.0	f0_balb.idr	promoter-TSS (NM_016917)	promoter-TSS (NM_016917)	-638.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-50925644-4	chr14	50925502	50925702	+	793.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133676)	promoter-TSS (NM_133676)	653.0	NM_009687	11792.0	Mm.203	NM_009687	ENSMUSG00000035960	Apex1	APE|Apex|HAP1|Ref-1	apurinic/apyrimidinic endonuclease 1	protein-coding	-1.84436392554074	-1.52091821270385	-1.82290882857571	-1.83054882630441	-1.84220491470818	-1.81159244170985	-1.82080331928423	-1.82918127036376	-1.56828060379516	0.655578384384393	1
Merged-chr3-96333073-2	chr3	96332973	96333173	+	541.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12214.0	NR_152105	100504145.0	Mm.100443	NR_152105	ENSMUSG00000097851	Platr30	Gm17580	pluripotency associated transcript 30	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-84298443-2	chr2	84298343	84298543	+	555.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1C|Other|Other	126823.0	NM_018782	54598.0	Mm.75467	NM_018782	ENSMUSG00000059588	Calcrl	AV071593|CRLR	calcitonin receptor-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-25774938-1	chr8	25774838	25775038	+	541.0	f0_balb.idr	intron (NM_026121, intron 2 of 4)	RSINE1|SINE|B4	10271.0	NM_026121	67384.0	Mm.118400	NM_026121	ENSMUSG00000037316	Bag4	2410112I15Rik|SODD	BCL2-associated athanogene 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-49278702-4	chr16	49278605	49278805	+	748.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	221219.0	NM_001166210	667772.0	Mm.301387	NM_001166210	ENSMUSG00000092009	Myh15	EG667772	myosin, heavy chain 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25713414-2	chr7	25713314	25713514	+	704.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028771, intron 4 of 4)	intron (NM_028771, intron 4 of 4)	5639.0	NM_028771	52132.0	Mm.278798	NM_028771	ENSMUSG00000002608	Ccdc97	1200014H14Rik|2810446P04Rik|AA545218|D7Ertd462e	coiled-coil domain containing 97	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3660408-2	chr12	3660308	3660508	+	811.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162465, intron 8 of 17)	URR1B|DNA|hAT-Charlie	87424.0	NM_007886	13528.0	Mm.286202	NM_007886	ENSMUSG00000071454	Dtnb	-	dystrobrevin, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-181289241-4	chr2	181289146	181289346	+	999.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-1280.0	NM_198169	229004.0	Mm.220423	NM_198169	ENSMUSG00000038705	Gmeb2	AI839884	glucocorticoid modulatory element binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-50705111-1	chr10	50705011	50705211	+	864.0	f0_balb.idr	intron (NM_198007, intron 16 of 41)	intron (NM_198007, intron 16 of 41)	112442.0	NM_198007	77987.0	Mm.222497	NM_198007	ENSMUSG00000038774	Ascc3	ASC1p200|B630009I04Rik|BC023451|D430001L07Rik|D630041L21|Helic1|RNAH	activating signal cointegrator 1 complex subunit 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-122985724-2	chr3	122985624	122985824	+	837.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1277.0	NM_133857	99526.0	Mm.491248	NM_133857	ENSMUSG00000039701	Usp53	AA939927|Phxr3|Sp6|mKIAA1350|mbo	ubiquitin specific peptidase 53	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-68105416-4	chr10	68105302	68105502	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023598, intron 8 of 9)	(T)n|Simple_repeat|Simple_repeat	125832.0	NM_001359319	170799.0	Mm.209844	NM_133244	ENSMUSG00000037846	Rtkn2	B130039D23Rik|Mbf|Plekhk1	rhotekin 2	protein-coding	5.56077194483409	5.38480145300663	5.44799591757103	6.19136698500118	4.95997227416727	5.86248910053346	5.15273259417391	5.72041949048735	-0.251671198528571	0.41463401741139	0.896676881011847
Merged-chr11-102221824-3	chr11	102221794	102221994	+	832.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001284248, intron 2 of 28)	intron (NM_001284248, intron 2 of 28)	8256.0	NR_106179	102465892.0		NR_106179	ENSMUSG00000098863	Mir8101	Gm27705|mmu-mir-8101	microRNA 8101	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45815445-2	chr7	45815345	45815545	+	863.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1129.0	NM_001112701	19158.0	Mm.272130	NM_011181	ENSMUSG00000003269	Cyth2	ARNO|CLM2|Pscd2	cytohesin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-136670701-4	chr1	136670707	136670907	+	792.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12589.0	NR_045324	100503460.0	Mm.30630	NR_045324	ENSMUSG00000097113	Gm19705	-	predicted gene, 19705	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-12782997-4	chr19	12782910	12783110	+	896.508301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053009, intron 2 of 10)	Lx6|LINE|L1	13113.0	NR_024093	664779.0	Mm.290924	NM_001039718	ENSMUSG00000024695	Gm44505	Zfp91-Cntf|Zfp91Cntf	predicted readthrough transcript (NMD candidate), 44505	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-86657994-2	chr6	86657894	86658094	+	865.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010751, intron 3 of 5)	intron (NM_010751, intron 3 of 5)	11165.0	NM_010751	17119.0	Mm.279580	NM_010751	ENSMUSG00000001156	Mxd1	AW122478|Mad|Mad1	MAX dimerization protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-158179158-4	chr2	158179066	158179266	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12842.0	NR_036606	73399.0	Mm.416861	NR_036606	ENSMUSG00000078957	1700060C20Rik	-	RIKEN cDNA 1700060C20 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-108591303-4	chr3	108591184	108591384	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358055)	promoter-TSS (NM_001358055)	6.0	NM_001358054	99512.0	Mm.285968	NM_181400	ENSMUSG00000040389	Wdr47	1810073M12Rik|AA552998|mKIAA0893	WD repeat domain 47	protein-coding	4.92169047020413	4.60201021580865	4.96867255527228	5.35143317516021	4.19769465442465	5.37297525353275	5.0793278035715	5.45147499402362	0.127863254255543	0.722965102290972	0.998431161219273
Merged-chr15-79882899-2	chr15	79882805	79883005	+	765.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9503.0	NM_001160415	80287.0	Mm.284059	NM_030255	ENSMUSG00000009585	Apobec3	Apobec|Arp3|BC003314|Cem15|Gm20117|Rfv3	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 3	protein-coding	2.61573086883397	2.62033223803545	2.12608678072445	1.89914194552409	2.637015545955	2.94928741893286	2.14200627140113	2.84989252729385	0.691232525798683	0.38041845651537	0.872151714892626
Merged-chr13-37453340-4	chr13	37453236	37453436	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	107991.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	3.85667324334786	4.30243267967205	2.76880810674995	4.11100484468443	4.30682117796529	4.14598852981545	3.33590153525098	4.50162923386667	0.370487945052441	0.471147154288327	0.925882871339486
Merged-chr5-53402953-4	chr5	53402824	53403024	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	135818.0	NM_001145433	66278.0	Mm.27900	NM_001145433	ENSMUSG00000061461	Smim20	1110067B18Rik|1810013D10Rik|N28078	small integral membrane protein 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-136134602-2	chr1	136134502	136134702	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039472, intron 1 of 34)	intron (NM_001039472, intron 1 of 34)	3212.0	NR_153829	16565.0	Mm.276135	NM_019962	ENSMUSG00000041642	Kif21b	2610511N21Rik|mKIAA0449	kinesin family member 21B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101009468-4	chr11	101009388	101009588	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001243051)	promoter-TSS (NM_001243051)	36.0	NM_001243051	11975.0	Mm.340818	NM_016920	ENSMUSG00000019302	Atp6v0a1	AA959968|ATP6a1|Atp6n1|Atp6n1a|Atpv0a1|Vpp-1|Vpp1	ATPase, H+ transporting, lysosomal V0 subunit A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-35879570-2	chr12	35879470	35879670	+	748.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46051.0	NM_207531	403205.0	Mm.190508	NM_207531	ENSMUSG00000036231	Agr3	BCMP11|E030025L21Rik|Gm888	anterior gradient 3	protein-coding	-0.499940950918087	-0.487518524828365	0.0891561271406926	-0.494726023626598	-0.499164980458282	-0.486601867615524	0.100277611126392	-0.494177430718284	0.0410194320726077	0.98816738256539	1
Merged-chr11-83584434-2	chr11	83584334	83584534	+	585.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_036453, intron 1 of 8)	MERVK26-int|LTR|ERVK	2373.0	NR_036452	100504464.0	Mm.341706	NR_036452	ENSMUSG00000051832	E230016K23Rik	-	RIKEN cDNA E230016K23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-74213068-3	chr18	74212960	74213160	+	757.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR30E_MM|LTR|ERV1	-3152.0	NM_028868	74322.0	Mm.17537	NM_028868	ENSMUSG00000024560	Cxxc1	2410002I16Rik|5830420C16Rik|AI426635|Cfp1|Cgbp|PHF18	CXXC finger 1 (PHD domain)	protein-coding	2.97319714529357	2.61443257023662	1.6865250993254	1.15871094984805	2.7766992806607	1.5254949230634	2.54103323259448	1.16393999218023	-0.272143986843806	0.803984799661628	0.998431161219273
Merged-chr7-15978775-2	chr7	15978675	15978875	+	699.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081418, exon 9 of 14)	exon (NM_001081418, exon 9 of 14)	-11240.0	NM_153068	259300.0	Mm.138215	NM_153068	ENSMUSG00000074364	Ehd2	BC027084|C130052H20Rik	EH-domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-4544758-1	chr6	4544658	4544858	+	574.333313	f0_balb.idr	Intergenic	Intergenic	39140.0	NM_007743	12843.0	Mm.277792	NM_007743	ENSMUSG00000029661	Col1a2	AA960264|AI325291|Col1a-2|Cola-2|Cola2|oim	collagen, type I, alpha 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-16811499-1	chr12	16811399	16811599	+	563.0	f1_c57bl6.idr	intron (NM_033270, intron 1 of 6)	intron (NM_033270, intron 1 of 6)	534.0	NM_033270	50496.0	Mm.23296	NM_033270	ENSMUSG00000057469	E2f6	AI462434|E2F6a|E2F6b|EMA	E2F transcription factor 6	protein-coding	0.047334921767352	-0.320608346096011	-0.32512208358522	-0.328606471041875	-0.333533458185554	0.423135391912392	-0.139732309131048	-0.327997631265523	1.51279179316175	0.540640381636503	1
Merged-chr16-85800828-3	chr16	85800733	85800933	+	816.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009621, intron 1 of 8)	intron (NM_009621, intron 1 of 8)	2280.0	NM_009621	11504.0	Mm.1421	NM_009621	ENSMUSG00000022893	Adamts1	ADAM-TS1|ADAMTS|ADAMTS-1|C3-C5|METH-1|METH1	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-103924286-4	chr13	103924178	103924378	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3692.0	NM_001005868	59079.0	Mm.277354	NM_021563	ENSMUSG00000021709	Erbin	1700028E05Rik|Erbb2ip|mKIAA1225	Erbb2 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-4501014-4	chr7	4500916	4501116	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029834, intron 1 of 21)	intron (NM_029834, intron 1 of 21)	664.0	NM_029834	232807.0	Mm.360391	NM_029834	ENSMUSG00000019254	Ppp1r12c	2410197A17Rik|AI839747|B430101M08|Mbs85	protein phosphatase 1, regulatory (inhibitor) subunit 12C	protein-coding	3.77008136451126	4.68927264937496	4.71124595654527	4.29664091796764	3.2799713948818	3.69806081457835	3.66382997559059	4.1638152253379	-0.913950466860202	0.0491635586696064	0.322800644063082
Merged-chr1-130430011-6	chr1	130429904	130430104	+	865.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151525, intron 2 of 3)	RLTR13D5|LTR|ERVK	-6961.0	NM_001317361	13137.0	Mm.436759	NM_007827	ENSMUSG00000026401	Cd55b	AI323748|Daf|Daf-TM|Daf2|TM-DAF	CD55 molecule, decay accelerating factor for complement B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-86240016-2	chr15	86239916	86240116	+	923.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145476, intron 4 of 12)	intron (NM_145476, intron 4 of 12)	25557.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34092801-4	chr17	34092694	34092894	+	981.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_046183, intron 2 of 4)	intron (NR_046183, intron 2 of 4)	415.0	NM_008206	15001.0	Mm.116	NM_008206	ENSMUSG00000024334	H2-Oa	H-2Oa	histocompatibility 2, O region alpha locus	protein-coding	3.61392531153579	3.61266834257989	3.00450721472907	3.01562521596376	2.88514634577178	2.24266996467058	2.67223255909166	2.93495518838906	-1.1069388392048	0.0860789475688139	0.450993397867561
Merged-chr13-107903783-4	chr13	107903693	107903893	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13729.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67282005-2	chr10	67281905	67282105	+	598.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001036293, intron 1 of 3)	intron (NM_001036293, intron 1 of 3)	3276.0	NM_001036293	641340.0	Mm.136223	NM_001036293	ENSMUSG00000075000	Nrbf2	NRBF-2	nuclear receptor binding factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-107801639-2	chr13	107801539	107801739	+	576.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 2 of 14)	intron (NM_145456, intron 2 of 14)	88425.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-9865053-4	chr3	9864953	9865153	+	886.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-31374.0	NM_001195031	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	0.852066111043485	0.42276529360597	0.629835173368766	0.402053799780829	0.388931116929663	1.40196033514854	0.413741000701616	1.52646206782948	2.1665171834759	0.216915710067185	0.707538695710375
Merged-chr2-126682452-4	chr2	126682342	126682542	+	939.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-6105.0	NM_001271470	14391.0	Mm.293266	NM_010249	ENSMUSG00000027361	Gabpb1	BABPB2|E4TF1|E4TF1-47|E4TF1-53|E4Tf1B|GABPB|GABPB-1|GABPB-2|GABPB1-1|GABPB1-2|NRF2B1|NRF2B2	GA repeat binding protein, beta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-54902865-4	chr11	54902764	54902964	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001329860)	promoter-TSS (NM_001329860)	10.0	NM_008161	14778.0	Mm.200916	NM_008161	ENSMUSG00000018339	Gpx3	AA960521|EGPx|GPx|GSHPx-3|GSHPx-P	glutathione peroxidase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133424328-3	chr4	133424218	133424418	+	784.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001358455)	TTS (NM_001358455)	54542.0	NR_039582	100628620.0		NR_039582	ENSMUSG00000092745	Mir5122	mmu-mir-5122|mu-mir-5122	microRNA 5122	ncRNA	2.79043293449684	3.56628912893401	2.36222921452198	3.03810232518522	3.07293717299954	3.43532288108705	2.69459596553029	3.44345281106818	0.318372789791605	0.624112429568127	0.980545735044748
Merged-chr2-59396226-2	chr2	59396126	59396326	+	692.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9544.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-54928224-2	chr1	54928124	54928324	+	566.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1837.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-24762011-4	chr13	24761911	24762111	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020567)	promoter-TSS (NM_020567)	-74.0	NM_020567	57441.0	Mm.12239	NM_020567	ENSMUSG00000006715	Gmnn	AW546347|Gem	geminin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-29435204-3	chr5	29435107	29435307	+	898.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001033457, exon 1 of 11)	exon (NM_001033457, exon 1 of 11)	540.0	NM_001033457	433864.0	Mm.262815	NM_001033457	ENSMUSG00000001569	Nom1	D5Kng1|Gm1040	nucleolar protein with MIF4G domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98801615-3	chr11	98801513	98801713	+	972.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001361932)	TTS (NM_001361932)	2959.0	NM_001361934	74026.0	Mm.258352	NM_028722	ENSMUSG00000052915	Msl1	2810017F12Rik|4121402D02Rik|4930463F05Rik|AA682082|Msl-1	male specific lethal 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-101997523-4	chr5	101997437	101997637	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 3 of 66)	intron (NM_172882, intron 3 of 66)	72384.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	3.45677736804411	3.31248092266549	2.7512213024635	3.11511477904579	3.14847787627206	3.33621625807611	3.48313423704138	3.30322657038079	0.217266864775825	0.706904874325949	0.998431161219273
Merged-chr2-73513449-4	chr2	73513360	73513560	+	933.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	16027.0	NM_153138	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-134641145-2	chr5	134641045	134641245	+	593.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-1736.0	NM_033561	22384.0	Mm.27955	NM_033561	ENSMUSG00000040731	Eif4h	AU018978|D5Ertd355e|E430026L18Rik|Ef4h|Wbscr1|Wscr1|eIF-4H	eukaryotic translation initiation factor 4H	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-160603452-3	chr2	160603322	160603522	+	745.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42475.0	NM_009408	21969.0	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-82808192-4	chr6	82808096	82808296	+	869.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33742.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-60750703-4	chr18	60750634	60750834	+	995.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2069.0	NM_008306	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78894810-2	chr15	78894708	78894908	+	983.416626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_145929)	TTS (NM_145929)	2968.0	NR_105920	102466210.0		NR_105920	ENSMUSG00000099267	Mir6955	Gm27769|mmu-mir-6955	microRNA 6955	ncRNA	1.77432496280963	2.5519520197073	1.78147649857733	2.38849618379357	1.90752664267823	1.19639770495103	2.2974955408568	1.14576432728489	-1.11405714133761	0.301923156823032	0.803803410258003
Merged-chr17-5445588-4	chr17	5445498	5445698	+	983.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5338.0	NM_027457	70544.0	Mm.46654	NM_027457	ENSMUSG00000004945	Tmem242	1110008A10Rik|2310046K16Rik|5730437N04Rik	transmembrane protein 242	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-94814499-2	chr8	94814399	94814599	+	647.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	4046.0	NM_011332	20295.0	Mm.41988	NM_011332	ENSMUSG00000031780	Ccl17	Abcd-2|Scya17|Scya17l|Tarc	chemokine (C-C motif) ligand 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-32087880-1	chr14	32087780	32087980	+	662.0	f1_balb.idr	intron (NM_145460, intron 1 of 7)	B2_Mm1a|SINE|B2	2152.0	NM_145460	218885.0	Mm.202257	NM_145460	ENSMUSG00000021906	Oxnad1	2410002F01Rik|AW492292|BC019806	oxidoreductase NAD-binding domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-84869169-2	chr3	84869069	84869269	+	806.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177773, intron 3 of 13)	intron (NM_001177773, intron 3 of 13)	5024.0	NM_001177774	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96758810-2	chr3	96758710	96758910	+	788.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_026406, intron 3 of 8)	intron (NM_026406, intron 3 of 8)	31199.0	NM_026406	67845.0	Mm.386792	NM_026406	ENSMUSG00000028098	Rnf115	2610028E05Rik|AU042696|Zfp364	ring finger protein 115	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-121805800-2	chr11	121805700	121805900	+	920.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24418.0	NM_029049	74675.0	Mm.61213	NM_029049	ENSMUSG00000039198	Ptchd3	4930451E13Rik|4933440L20Rik|RNDEu-3	patched domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-30388840-4	chr16	30388750	30388950	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001128094)	promoter-TSS (NM_001128094)	-320.0	NM_001128096	224088.0	Mm.8924	NM_001128094	ENSMUSG00000022533	Atp13a3	AU022875|Gm1745|Gm541|Gm542	ATPase type 13A3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-103383749-4	chr11	103383644	103383844	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183034, intron 5 of 11)	L2a|LINE|L2	-20052.0	NM_001205236	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-179502762-2	chr1	179502662	179502862	+	636.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027188, intron 1 of 11)	intron (NM_027188, intron 1 of 11)	15279.0	NM_027188	69726.0	Mm.222338	NM_027188	ENSMUSG00000055067	Smyd3	2410008A19Rik|Zmynd1	SET and MYND domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-59547265-4	chr9	59547163	59547363	+	866.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010421, intron 1 of 13)	intron (NM_010421, intron 1 of 13)	7723.0	NM_010421	15211.0	Mm.2284	NM_010421	ENSMUSG00000025232	Hexa	Hex-1	hexosaminidase A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-25240033-6	chr17	25239919	25240119	+	988.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163718)	promoter-TSS (NM_001163718)	97.0	NM_172529	214505.0	Mm.38607	NM_172529	ENSMUSG00000035521	Gnptg	6430527N14Rik|A830081F19|AU067667|AU067744|Mdcp1|Tce7	N-acetylglucosamine-1-phosphotransferase, gamma subunit	protein-coding	4.75843904171832	4.5241633223924	3.69898280898113	4.6311870299061	4.59840977060489	3.86080022625955	3.72903972270228	4.7295722965947	-0.198630651524495	0.652744892675995	0.986434615290108
Merged-chr5-102551128-2	chr5	102551028	102551228	+	602.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146161, intron 1 of 8)	intron (NM_146161, intron 1 of 8)	69737.0	NM_029270	231532.0	Mm.440191	NM_029270	ENSMUSG00000057315	Arhgap24	0610025G21Rik	Rho GTPase activating protein 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-163587675-4	chr2	163587572	163587772	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14642.0	NM_181734	76080.0	Mm.89828	NM_029512	ENSMUSG00000017679	Ttpal	3110080A02Rik|5830472M02Rik	tocopherol (alpha) transfer protein-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-6370301-1	chr4	6370201	6370401	+	816.333313	f1_balb.idr	intron (NM_001098227, intron 1 of 8)	intron (NM_001098227, intron 1 of 8)	4621.0	NM_001098227	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	0.952375617217542	1.83071322144961	2.1094241129048	1.8323565490753	0.957310595490166	2.10143811043625	1.00876115467809	2.23175266858986	-0.0716723553829119	0.955338864916361	0.998431161219273
Merged-chr11-85774904-4	chr11	85774821	85775021	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_046194, intron 1 of 2)	intron (NR_046194, intron 1 of 2)	759.0	NR_046194	78420.0	Mm.488197	NR_046194	ENSMUSG00000085514	Bcas3os2	9530048J24Rik	breast carcinoma amplified sequence 3 opposite strand 2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-122890636-2	chr10	122890536	122890736	+	947.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110218, intron 6 of 9)	intron (NM_001110218, intron 6 of 9)	95088.0	NR_029527	387251.0		NR_029527	ENSMUSG00000065406	Mirlet7i	Mirnlet7i|let-7i|mmu-let-7i	microRNA let7i	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-83859254-4	chr3	83859156	83859356	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17648.0	NM_011905	24088.0	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-95510181-4	chr10	95510086	95510286	+	807.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	-4976.0	NM_080560	93765.0	Mm.371667	NM_080560	ENSMUSG00000074781	Ube2n	1500026J17Rik|AL022654|BB101821|UBC13	ubiquitin-conjugating enzyme E2N	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75192938-4	chr11	75192791	75192991	+	924.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-1102.0	NM_177708	237847.0	Mm.82661	NM_177708	ENSMUSG00000045287	Rtn4rl1	Ngr3|Ngrh2|Ngrl2	reticulon 4 receptor-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-16509594-2	chr11	16509494	16509694	+	675.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-1110.0	NM_001109971	20335.0	Mm.325350	NM_011343	ENSMUSG00000078974	Sec61g	-	SEC61, gamma subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-82544580-2	chr11	82544480	82544680	+	562.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-88773.0	NR_033582	791422.0	Mm.341562	NR_033582	ENSMUSG00000069796	Gm11426	-	predicted gene 11426	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133599910-4	chr4	133599854	133600054	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_018754)	TTS (NM_018754)	2214.0	NM_018754	55948.0	Mm.44482	NM_018754	ENSMUSG00000047281	Sfn	Er|Mme1|Ywhas	stratifin	protein-coding	4.76413167149939	5.1944698612284	4.89950431257702	3.96068693024596	4.51337168040053	4.56881506116363	4.72630736899188	4.34969356832534	-0.280019870453156	0.46481578525116	0.922521920152562
Merged-chr1-54920294-4	chr1	54920191	54920391	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081433, intron 1 of 27)	intron (NM_001081433, intron 1 of 27)	6096.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-122779079-2	chr10	122778979	122779179	+	599.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110218, intron 1 of 9)	B3|SINE|B2	99764.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-120792336-2	chr6	120792236	120792436	+	762.599976	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081048, intron 7 of 9)	intron (NM_001081048, intron 7 of 9)	18568.0	NM_001081048	71803.0	Mm.425340	NM_001081048	ENSMUSG00000004902	Slc25a18	1500015I14Rik|AW125787	solute carrier family 25 (mitochondrial carrier), member 18	protein-coding	-0.499940950918087	-0.487518524828365	0.0891561271406926	-0.494726023626598	-0.499164980458282	-0.486601867615524	0.100277611126392	-0.494177430718284	0.0410194320726077	0.98816738256539	1
Merged-chr4-150629860-2	chr4	150629760	150629960	+	699.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355737, intron 8 of 8)	intron (NM_001355737, intron 8 of 8)	22314.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-42909589-4	chr17	42909483	42909683	+	927.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33159.0	NM_009847	12488.0	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-108786753-3	chr3	108786649	108786849	+	708.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	47091.0	NM_177859	329738.0	Mm.72322	NM_177859	ENSMUSG00000049565	Aknad1	4921525H12Rik	AKNA domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-21426705-1	chr12	21426605	21426805	+	895.5	f0_balb.idr	Intergenic	Intergenic	-9269.0	NM_011739	22630.0	Mm.289630	NM_011739	ENSMUSG00000076432	Ywhaq	2700028P07Rik|AA409740|AU021156|R74690	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	protein-coding	3.27862998661415	2.86388049409293	3.47518311442392	2.90495866499246	2.77964672318616	2.75201318638237	3.35935005624182	2.27832830872178	-0.547083077981539	0.408648089896467	0.892482582080491
Merged-chr11-75585884-2	chr11	75585784	75585984	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2195.0	NM_008850	18738.0	Mm.3128	NM_008850	ENSMUSG00000017781	Pitpna	Pitpn|vb|vibrator	phosphatidylinositol transfer protein, alpha	protein-coding	1.15573636800402	1.30484102982563	1.37640939057117	0.942796861494828	1.04755351834181	0.788844845771295	1.49588397785894	1.09660379159056	-0.292290196216096	0.825428411415155	0.998431161219273
Merged-chr2-35463597-4	chr2	35463489	35463689	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER21B|LTR|ERV1	-2140.0	NM_001145821	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-144678557-3	chr3	144678437	144678637	+	580.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41798.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-86525843-4	chr6	86525713	86525913	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011865, exon 1 of 1)	exon (NM_011865, exon 1 of 1)	376.0	NM_011865	23983.0	Mm.274146	NM_011865	ENSMUSG00000051695	Pcbp1	WBP17|[a]CP-1|alphaCP-1|hnRNP E1|hnRNP-E1	poly(rC) binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-81051694-4	chr13	81051581	81051781	+	918.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015587, intron 1 of 1)	intron (NR_015587, intron 1 of 1)	87607.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-88203839-2	chr11	88203733	88203933	+	865.625	f0_balb.idr|f0_c57.idr	promoter-TSS (NR_111902)	promoter-TSS (NR_111902)	-555.0	NM_024174	64656.0	Mm.168680	NM_024174	ENSMUSG00000023723	Mrps23	D11Bwg1153e|MRP-S23|Rpms23|S23mt	mitochondrial ribosomal protein S23	protein-coding	3.63867230601707	2.99436098364325	2.76434896329577	1.51641839915781	3.27051526524691	3.23880185918834	2.31823821868464	4.14497129465435	0.747507006453987	0.330990014894915	0.83197671091297
Merged-chr8-24400344-4	chr8	24400255	24400455	+	993.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38591.0	NM_026931	69068.0	Mm.25775	NM_026931	ENSMUSG00000056313	Tcim	1110065B09Rik|1810011O10Rik|AW121743|AW321058	transcriptional and immune response regulator	protein-coding	2.35868436680978	2.50408297563568	2.8035028430779	3.36268864604449	2.37873742838176	2.522718235982	2.82550257572218	3.55017109644846	0.165391999343505	0.820644482580043	0.998431161219273
Merged-chr5-4530892-4	chr5	4530810	4531010	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	227306.0	NM_021457	14362.0	Mm.246003	NM_021457	ENSMUSG00000044674	Fzd1	AW227548|FZ-1|Fz1	frizzled class receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-123366884-4	chr9	123366791	123366991	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001348167)	promoter-TSS (NM_001348167)	-36.0	NM_001348167	102436.0	Mm.276076	NM_153168	ENSMUSG00000035202	Lars2	AI035546|Kiaa0028|LEURS	leucyl-tRNA synthetase, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-58959278-4	chr11	58959178	58959378	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2433.0	NM_001318003	382523.0		NM_001318003		Gm12260	H3t	predicted gene 12260	protein-coding	5.2190810723537	5.15959553601669	5.72797002788962	4.20486308540982	3.90051322257951	4.50237801357195	4.09484706971904	3.89226461804358	-1.31774087865726	0.00127114517966263	0.0236330576429632
Merged-chr7-45238111-4	chr7	45238019	45238219	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007645, intron 2 of 7)	intron (NM_007645, intron 2 of 7)	720.0	NM_007645	12493.0	Mm.3689	NM_007645	ENSMUSG00000030798	Cd37	Tspan26	CD37 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-51413551-3	chr3	51413476	51413676	+	886.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2440.0	NM_053089	74838.0	Mm.275281	NM_053089	ENSMUSG00000063273	Naa15	5730450D16Rik|6330400I15|ASTBDN|Narg1|Tbdn-1|mNAT1	N(alpha)-acetyltransferase 15, NatA auxiliary subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-111941629-2	chr13	111941529	111941729	+	928.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	73693.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-105868331-2	chr3	105868231	105868431	+	639.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2527.0	NM_027025	69296.0	Mm.235024	NM_027025	ENSMUSG00000000562	Tmigd3	1700001d09rik|4930578J19Rik|Tg(H2-K-CALR*)del52Shmd	transmembrane and immunoglobulin domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-50114075-1	chr18	50113975	50114175	+	708.0	f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-14126.0	NM_008292	15488.0	Mm.277857	NM_008292	ENSMUSG00000024507	Hsd17b4	17-beta-HSD|17[b]-HSD|DBP|MFE-2|MFP2|MPF-2|Mfp-2|perMFE-2	hydroxysteroid (17-beta) dehydrogenase 4	protein-coding	0.918612949318617	0.786661631542059	1.83392158413009	1.12442324158359	1.20579534638434	1.36990024687282	0.77579743329356	1.60833029808246	0.109595592642367	0.936661225805644	0.998431161219273
Merged-chr16-13717088-4	chr16	13717026	13717226	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011987, intron 3 of 3)	MTC|LTR|ERVL-MaLR	-12710.0	NR_040574	76684.0	Mm.491043	NR_040574	ENSMUSG00000086550	Pla2g10os	1810007I06Rik	phospholipase A2, group X, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28810322-3	chr17	28810224	28810424	+	944.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081315, intron 2 of 12)	intron (NM_001081315, intron 2 of 12)	9198.0	NM_001081315	268936.0	Mm.291877	NM_199061	ENSMUSG00000063952	Brpf3	AI413466|AW493400|mKIAA1286	bromodomain and PHD finger containing, 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-24504635-2	chr9	24504535	24504735	+	727.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-1495.0	NM_172920	244745.0	Mm.38526	NM_172920	ENSMUSG00000043067	Dpy19l1	1100001I19Rik|6030402K12|AI225861|AW558481	dpy-19-like 1 (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-155409305-2	chr4	155409205	155409405	+	674.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_102283, exon 5 of 5)	non-coding (NR_102283, exon 5 of 5)	115.0	NM_001166029	544678.0	Mm.472798	NM_177674	ENSMUSG00000078490	Cfap74	2010015L04Rik|A530045M11	cilia and flagella associated protein 74	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-168954713-3	chr2	168954610	168954810	+	848.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009564, intron 1 of 5)	intron (NM_009564, intron 1 of 5)	877.0	NM_009564	22722.0	Mm.2095	NM_009564	ENSMUSG00000027551	Zfp64	-	zinc finger protein 64	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97279503-6	chr11	97279444	97279644	+	919.805542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008942, intron 1 of 22)	intron (NM_008942, intron 1 of 22)	1032.0	NM_008942	19155.0	Mm.29824	NM_008942	ENSMUSG00000001441	Npepps	AAP-S|MP100|Psa|R74825|goku	aminopeptidase puromycin sensitive	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-62037770-4	chr18	62037675	62037875	+	998.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	84700.0	NM_172628	225608.0	Mm.262320	NM_172628	ENSMUSG00000045629	Sh3tc2	D430044G18Rik	SH3 domain and tetratricopeptide repeats 2	protein-coding	2.00338607310878	1.83878226499524	1.92993103990559	1.06432215061558	2.60079375628715	1.422100967588	3.07859010245672	1.06901700215253	1.27302439838725	0.254600462132646	0.752635433147376
Merged-chr4-127126048-4	chr4	127125949	127126149	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001099319)	promoter-TSS (NM_001099319)	6.0	NM_001099319	100039968.0	Mm.392655	NM_001099319	ENSMUSG00000070737	Tmem35b	Gm12942|Zmym6nb	transmembrane protein 35B	protein-coding	3.67065420677576	2.01663451068781	2.17715906519	3.69172901740088	3.20556890030296	3.94612424862229	2.99277510163309	3.82304650878095	0.644693199255785	0.350701466614592	0.851344470809322
Merged-chr14-46994469-4	chr14	46994382	46994582	+	901.3875119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037221, intron 2 of 12)	intron (NM_001037221, intron 2 of 12)	-6858.0	NM_001163433	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118244057-5	chr11	118243965	118244165	+	930.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	4527.0	NM_001112699	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-65528353-4	chr3	65528264	65528464	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178892)	promoter-TSS (NM_178892)	-83.0	NM_178892	99929.0	Mm.246398	NM_178892	ENSMUSG00000034640	Tiparp	ARTD14|AW558171|PARP7	TCDD-inducible poly(ADP-ribose) polymerase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-29355719-4	chr19	29355581	29355781	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026362, intron 3 of 5)	intron (NM_026362, intron 3 of 5)	6190.0	NM_026362	67759.0	Mm.275511	NM_026362	ENSMUSG00000016495	Plgrkt	1110007H22Rik|5033414D02Rik|AI852040|Plg-R(KT)|Plg-RKT	plasminogen receptor, C-terminal lysine transmembrane protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-86703786-4	chr1	86703674	86703874	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153530)	promoter-TSS (NM_153530)	-30.0	NM_153530	208718.0	Mm.389152	NM_153530	ENSMUSG00000053333	Dis3l2	4930429A22Rik|8030493P09Rik	DIS3 like 3'-5' exoribonuclease 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-126674104-3	chr2	126674019	126674219	+	872.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271470, intron 1 of 8)	intron (NM_001271470, intron 1 of 8)	1233.0	NM_001355109	14391.0	Mm.293266	NM_010249	ENSMUSG00000027361	Gabpb1	BABPB2|E4TF1|E4TF1-47|E4TF1-53|E4Tf1B|GABPB|GABPB-1|GABPB-2|GABPB1-1|GABPB1-2|NRF2B1|NRF2B2	GA repeat binding protein, beta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76451288-2	chr15	76451188	76451388	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175457, intron 38 of 43)	intron (NM_175457, intron 38 of 43)	-6150.0	NM_198885	20289.0	Mm.322821	NM_198885	ENSMUSG00000034161	Scx	BB114693|Bhlha41|Scl	scleraxis	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-30671455-8	chr14	30671358	30671558	+	957.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177815, intron 6 of 12)	intron (NM_177815, intron 6 of 12)	17083.0	NM_177815	328370.0	Mm.259657	NM_177815	ENSMUSG00000052395	Rft1	D930025H04	RFT1 homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-51845685-4	chr13	51845578	51845778	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011817)	promoter-TSS (NM_011817)	-997.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81359052-4	chr10	81358973	81359173	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028657, intron 1 of 9)	intron (NM_028657, intron 1 of 9)	1582.0	NM_028657	73822.0	Mm.182281	NM_028657	ENSMUSG00000034854	Mfsd12	C19orf28|F630110N24Rik|Wdt1|gr	major facilitator superfamily domain containing 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-107865222-2	chr11	107865058	107865258	+	893.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46204.0	NM_080644	140723.0	Mm.87663	NM_080644	ENSMUSG00000040373	Cacng5	-	calcium channel, voltage-dependent, gamma subunit 5	protein-coding	1.60091884294901	2.12040612215023	2.74605965531431	2.59322051096371	1.76844456482137	1.31010138464408	2.31523235986196	2.1280568247276	-0.975962919820297	0.312372129855988	0.813717909699793
Merged-chr11-115003414-3	chr11	115003304	115003504	+	845.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	-1524.0	NM_134158	140497.0	Mm.2699	NM_134158	ENSMUSG00000044811	Cd300c2	CLM4|Cd300c|Cd300d|DIgR1|Igsf7|Lmir2|MAIR-II	CD300C molecule 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-145165202-2	chr5	145165102	145165302	+	747.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_133735, exon 2 of 9)	exon (NM_133735, exon 2 of 9)	1902.0	NM_133735	71799.0	Mm.277413	NM_133735	ENSMUSG00000029624	Ptcd1	1110069M14Rik	pentatricopeptide repeat domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-116422352-2	chr4	116422252	116422452	+	728.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001042743, intron 3 of 29)	MERV1_LTR|LTR|ERV1	41829.0	NM_001042743	17776.0	Mm.9287	NM_008641	ENSMUSG00000003810	Mast2	MAST205|Mtssk	microtubule associated serine/threonine kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80800292-2	chr10	80800192	80800392	+	675.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013651, intron 1 of 8)	intron (NM_013651, intron 1 of 8)	1557.0	NM_013651	20222.0	Mm.358633	NM_013651	ENSMUSG00000020211	Sf3a2	66kDa|AW047242|PRP11|SFA66|Sap62	splicing factor 3a, subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-55693497-4	chr13	55693405	55693605	+	974.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181278, intron 1 of 1)	CpG	381.0	NM_181278	78521.0	Mm.28449	NM_181278	ENSMUSG00000045767	B230219D22Rik	AA119856|D530037I19Rik	RIKEN cDNA B230219D22 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-154925895-4	chr4	154925755	154925955	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178931, intron 3 of 7)	intron (NM_178931, intron 3 of 7)	2222.0	NM_178931	230979.0	Mm.215147	NM_178931	ENSMUSG00000042333	Tnfrsf14	Atar|HveA|Hvem|Tnfrs14	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-138955653-3	chr1	138955543	138955743	+	853.5277710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8066.0	NM_001166501	329260.0	Mm.337604	NM_181347	ENSMUSG00000056268	Dennd1b	4632404N19Rik|4930467M19Rik|6820401H01Rik|F730008N07Rik	DENN/MADD domain containing 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-130449247-2	chr5	130449147	130449347	+	842.5	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_021371, exon 1 of 6)	5' UTR (NM_021371, exon 1 of 6)	455.0	NM_021371	140904.0	Mm.40875	NM_021371	ENSMUSG00000060371	Caln1	9630012C17Rik|Cabp8|MNCb-0849	calneuron 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3292218-1	chr19	3292118	3292318	+	543.0	f0_c57.idr	intron (NM_172252, intron 6 of 6)	intron (NM_172252, intron 6 of 6)	3298.0	NR_105950	102465594.0		NR_105950	ENSMUSG00000099261	Mir6984	Gm27771|mmu-mir-6984	microRNA 6984	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35051892-4	chr17	35051805	35052005	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033444, intron 1 of 5)	intron (NM_033444, intron 1 of 5)	1662.0	NM_033444	114584.0	Mm.29524	NM_033444	ENSMUSG00000007041	Clic1	Clcp|G6	chloride intracellular channel 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-14785949-2	chr18	14785849	14786049	+	691.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001100449, intron 1 of 14)	intron (NM_001100449, intron 1 of 14)	2704.0	NM_001100449	72504.0	Mm.312233	NM_001100449	ENSMUSG00000054321	Taf4b	105kDa|2610524B04Rik|4932409F03Rik|AW987595|TAFII-105|TAFII105|Taf2c2	TATA-box binding protein associated factor 4b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-101641694-4	chr4	101641601	101641801	+	887.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001164585, exon 20 of 20)	3' UTR (NM_001164585, exon 20 of 20)	-6082.0	NM_175036	230514.0	Mm.4756	NM_175036	ENSMUSG00000035212	Leprot	LEPR|OB-RGRP|Obrgrp|VPS55	leptin receptor overlapping transcript	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-150669826-4	chr2	150669735	150669935	+	925.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_040331)	TTS (NR_040331)	-1595.0	NM_080575	68738.0	Mm.7044	NM_080575	ENSMUSG00000027452	Acss1	1110032O15Rik|AI788978|Acas2|Acas2l|AceCS2	acyl-CoA synthetase short-chain family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-50650251-2	chr18	50650151	50650351	+	543.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1VL1|LINE|L1	-81552.0	NM_026108	67365.0	Mm.158150	NM_026108	ENSMUSG00000048875	Pudp	1700121L12Rik|GS1|Hdhd1|Hdhd1a	pseudouridine 5-phosphatase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-103476870-3	chr15	103476775	103476975	+	716.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153505, intron 18 of 30)	intron (NM_153505, intron 18 of 30)	23050.0	NM_153505	105855.0	Mm.30805	NM_153505	ENSMUSG00000022488	Nckap1l	4930568P13Rik|AI463083|Hem1|Hemp1	NCK associated protein 1 like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80157654-2	chr10	80157554	80157754	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_021565, exon 9 of 9)	3' UTR (NM_021565, exon 9 of 9)	7972.0	NM_001305799	59090.0	Mm.143813	NM_021565	ENSMUSG00000035621	Midn	3000003C15Rik	midnolin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-51814606-3	chr17	51814466	51814666	+	756.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163632, intron 1 of 10)	intron (NM_001163632, intron 1 of 10)	-2382.0	NM_001357636	20230.0	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-93913700-2	chr15	93913600	93913800	+	635.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045737, intron 2 of 3)	intron (NR_045737, intron 2 of 3)	13411.0	NR_045737	77248.0	Mm.410768	NR_045737	ENSMUSG00000116360	9430014N10Rik	-	RIKEN cDNA 9430014N10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-24481222-2	chr7	24481122	24481322	+	888.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153112)	promoter-TSS (NM_153112)	-801.0	NM_153112	260299.0	Mm.178322	NM_153112	ENSMUSG00000054793	Cadm4	Igdf4c|Igsf4c|Tsll2	cell adhesion molecule 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-121916479-4	chr14	121916377	121916577	+	995.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_182806)	promoter-TSS (NM_182806)	-703.0	NM_182806	110168.0	Mm.37405	NM_182806	ENSMUSG00000050350	Gpr18	-	G protein-coupled receptor 18	protein-coding	2.79056118297816	3.31895655066586	3.29389263490493	2.5987667002618	3.06962061103946	3.3425677012168	3.31871260322508	2.61227428975648	0.141797777303444	0.823592377435042	0.998431161219273
Merged-chr4-40148554-4	chr4	40148474	40148674	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007386, intron 1 of 20)	intron (NM_007386, intron 1 of 20)	5309.0	NM_007386	11428.0	Mm.331547	NM_007386	ENSMUSG00000028405	Aco1	Aco-1|Irebp|Irp1	aconitase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-42599829-1	chr19	42599729	42599929	+	851.0	f1_balb.idr	intron (NM_001164311, intron 11 of 14)	intron (NM_001164311, intron 11 of 14)	12977.0	NM_001164311	67573.0	Mm.178767	NM_053083	ENSMUSG00000025185	Loxl4	4833426I20Rik|Loxc	lysyl oxidase-like 4	protein-coding	-2.18292257394068	-2.15545247547656	-2.03304972317742	-2.17058342868585	-2.18099422382073	-2.1536522739386	-2.16187909550322	-2.16936197735154	-0.683654500252594	0.846597994014493	1
Merged-chr1-172000844-4	chr1	172000754	172000954	+	785.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_033509)	TTS (NM_033509)	26441.0	NM_033509	93840.0	Mm.36148	NM_033509	ENSMUSG00000026556	Vangl2	C530001F03Rik|Lootl|Lp|Lpp1|Ltap|Vang1l2|loop-tail|ska17|ska<m17Jus>|stbm|strabismus	VANGL planar cell polarity 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-70973187-1	chr17	70973087	70973287	+	603.0	f1_c57bl6.idr	TTS (NM_023402)	TTS (NM_023402)	17329.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	0.883399341229632	0.469470800925713	0.45843089308481	1.66600130181506	0.89368087229053	0.471935058541696	0.46088130964681	1.08202981961251	-1.00184193897448	0.559321347432524	0.960321604678676
Merged-chr7-141370148-4	chr7	141370035	141370235	+	966.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5025.0	NR_033532	320871.0	Mm.475463	NM_177280	ENSMUSG00000086844	B230206H07Rik	-	RIKEN cDNA B230206H07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34364007-4	chr17	34363954	34364154	+	937.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_079835, intron 6 of 8)	Lx8|LINE|L1	9232.0	NM_079835	547431.0	Mm.441007	NM_079835	ENSMUSG00000024340	Btnl2	BTL-II|BTLN2|Btl2|Gm315|NG9	butyrophilin-like 2	protein-coding	3.23879071604029	3.91908399621329	2.44782120110754	3.69230774964079	3.85698808358247	3.94627273691928	2.93346424581281	2.83784827665501	0.0931979228323323	0.8808477372375	0.998431161219273
Merged-chr8-94330907-4	chr8	94330776	94330976	+	911.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019415, intron 2 of 24)	intron (NM_019415, intron 2 of 24)	1668.0	NM_001205311	20497.0	Mm.25804	NM_019415	ENSMUSG00000031766	Slc12a3	AI035291|NCC|NCCT|TSC	solute carrier family 12, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-24426181-2	chr5	24426081	24426281	+	763.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_009207, intron 1 of 22)	intron (NM_009207, intron 1 of 22)	949.0	NM_009207	20535.0	Mm.4580	NM_009207	ENSMUSG00000028962	Slc4a2	Ae2|B3RP	solute carrier family 4 (anion exchanger), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98023313-4	chr11	98023213	98023413	+	999.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031173)	promoter-TSS (NM_031173)	-686.0	NM_001282978	12295.0	Mm.41252	NM_031173	ENSMUSG00000020882	Cacnb1	CAB1|Cchb1|Cchlb1	calcium channel, voltage-dependent, beta 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-29125074-4	chr2	29124993	29125193	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_198033, exon 1 of 26)	5' UTR (NM_198033, exon 1 of 26)	101.0	NM_198033	269254.0	Mm.41867	NM_198033	ENSMUSG00000043535	Setx	A130090N03|A930037J23Rik|AOA2|AW060766|Als4|SCAR1|Sen1|mKIAA0625	senataxin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21184150-4	chr9	21184067	21184267	+	988.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310750)	promoter-TSS (NM_001310750)	66.0	NM_001310750	18577.0	Mm.191749	NM_019798	ENSMUSG00000032177	Pde4a	D9Ertd60e|Dpde2	phosphodiesterase 4A, cAMP specific	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-91752541-2	chr6	91752441	91752641	+	557.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009320, intron 14 of 14)	intron (NM_009320, intron 14 of 14)	54852.0	NM_001159507	243547.0	Mm.333264	NM_001033353	ENSMUSG00000030098	Grip2	-	glutamate receptor interacting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127188415-1	chr7	127188315	127188515	+	577.0	f1_balb.idr	Intergenic	Intergenic	7662.0	NM_001285907	70233.0	Mm.28050	NM_027353	ENSMUSG00000042502	Cd2bp2	1500011B02Rik|2410024K20Rik|AW048183	CD2 antigen (cytoplasmic tail) binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-45719281-4	chr5	45719183	45719383	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_027993)	TTS (NR_027993)	8295.0	NR_027993	100041576.0	Mm.451765	NR_027993	ENSMUSG00000015882	Gm3414	-	predicted gene 3414	ncRNA	2.78867976932346	3.32928949089117	1.80346860890731	2.33986537609222	3.92308800613505	3.4368745901499	1.81912374945476	3.22012559570149	1.04620611731951	0.179738012324299	0.651116144887359
Merged-chr8-13585485-2	chr8	13585385	13585585	+	933.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 13 of 23)	intron (NM_009025, intron 13 of 23)	-23024.0	NM_001080781	66501.0	Mm.46136	NM_025601	ENSMUSG00000031452	1700029H14Rik	-	RIKEN cDNA 1700029H14 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76313443-4	chr15	76313336	76313536	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-6191.0	NM_153122	75475.0	Mm.322738	NM_153122	ENSMUSG00000022562	Oplah	1700010G02Rik	5-oxoprolinase (ATP-hydrolysing)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-136152743-2	chr4	136152643	136152843	+	896.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8921.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115301075-4	chr5	115300991	115301191	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019682)	promoter-TSS (NM_019682)	-29.0	NR_131932	102639268.0	Mm.319998	NR_131932		Gm13830	-	predicted gene 13830	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-62181758-2	chr10	62181658	62181858	+	608.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12469.0	NR_106122	102465767.0		NR_106122	ENSMUSG00000099185	Mir7662	Gm27876|mmu-mir-7662	microRNA 7662	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-13127265-3	chr4	13127161	13127361	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	220424.0	NM_001171801	208820.0	Mm.12057	NM_173746	ENSMUSG00000055963	Triqk	C130086A10|Gm11818	triple QxxK/R motif containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-79947655-2	chr7	79947555	79947755	+	715.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12391.0	NM_027420	70420.0	Mm.34266	NM_027420	ENSMUSG00000039043	Arpin	2610034B18Rik	actin-related protein 2/3 complex inhibitor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-51550141-4	chr6	51550027	51550227	+	691.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361577, intron 1 of 6)	L1MB8|LINE|L1	4834.0	NM_001361577	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-138756052-4	chr5	138755868	138756068	+	644.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_030565, exon 1 of 10)	exon (NM_030565, exon 1 of 10)	887.0	NM_001359593	80752.0	Mm.320355	NM_030565	ENSMUSG00000025854	Fam20c	C76981|DMP-4|DMP4|GEF-CK|mKIAA4081	family with sequence similarity 20, member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-45122713-1	chr10	45122613	45122813	+	548.0	f0_balb.idr	intron (NM_011156, intron 9 of 14)	intron (NM_011156, intron 9 of 14)	55499.0	NM_011156	19072.0	Mm.10281	NM_011156	ENSMUSG00000019849	Prep	AI047692|AI450383|D10Wsu136e|PEP|Pop	prolyl endopeptidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-77748216-1	chr9	77748116	77748316	+	834.666687	f0_balb.idr	Intergenic	RMER4B|LTR|ERVK	-6319.0	NR_151778	14629.0	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	-0.453422159518752	-0.441743222540291	-0.445578018511639	-0.44853098770836	-0.0770340191228511	0.173248355772649	-0.444732939609478	-0.284163162928765	3.51353816272636	0.159674616838159	1
Merged-chr14-55139300-2	chr14	55139200	55139400	+	696.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22365.0	NM_177049	319984.0	Mm.19047	NM_177049	ENSMUSG00000022208	Jph4	9330157P13Rik|JP-4|JPHL1	junctophilin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30438399-2	chr7	30438294	30438494	+	652.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_007467, intron 10 of 16)	intron (NM_007467, intron 10 of 16)	7188.0	NM_007467	11803.0	Mm.2381	NM_007467	ENSMUSG00000006651	Aplp1	-	amyloid beta (A4) precursor-like protein 1	protein-coding	0.359538594594533	0.394724934520449	-0.0905113437476376	-0.094220003951663	-0.0994523724695865	-0.0846103168609433	-0.0894502111451009	0.43202626962634	-0.784541404514342	0.736755653151574	1
Merged-chr6-128839050-4	chr6	128838998	128839198	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-12783.0	NM_030599	80782.0	Mm.6180	NM_030599	ENSMUSG00000079298	Klrb1b	Klrb1d|Ly55b|Ly55d|NKR-P1B|NKR-P1D|Nkrp1-b|Nkrp1b|Nkrp1d|ly-55b|ly-55d	killer cell lectin-like receptor subfamily B member 1B	protein-coding	5.28315360196964	5.47565676031841	5.52376955062451	4.73457330690803	5.60919311139755	5.94825013203701	5.50388218652369	5.57080332810935	0.436790249063303	0.126053550088452	0.555889669429522
Merged-chr5-64394110-2	chr5	64394084	64394284	+	786.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	73758.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	-1.06997269762433	-1.30473905204845	-1.3145270772132	-1.32256725251374	-1.06385251204029	-1.30261794616352	-1.3123112828633	-1.32112806497905	0.0394047164033882	0.991001358494878	1
Merged-chr8-47875500-2	chr8	47875400	47875600	+	555.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133791, intron 8 of 22)	intron (NM_133791, intron 8 of 22)	51018.0	NM_029383	75677.0	Mm.390033	NM_029383	ENSMUSG00000038064	Cldn22	2210404A22Rik|5330431C14Rik|9530051B05Rik	claudin 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76251190-4	chr15	76251044	76251244	+	806.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	2953.0	NR_105918	102465575.0		NR_105918	ENSMUSG00000098625	Mir6953	Gm27738|mmu-mir-6953	microRNA 6953	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127343261-4	chr10	127343151	127343351	+	754.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1672.0	NM_010296	14632.0	Mm.391450	NM_010296	ENSMUSG00000025407	Gli1	AV235269|Zfp-5|Zfp5	GLI-Kruppel family member GLI1	protein-coding	0.664357002974253	0.703037100537271	0.896503113128365	1.03463003094178	1.32776169999823	0.93197787878032	1.35246602116513	1.75559811429082	2.64281305965427	0.072898270662222	0.407691167528903
Merged-chr14-25627780-2	chr14	25627680	25627880	+	588.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 6 of 23)	intron (NM_183208, intron 6 of 23)	24267.0	NM_001309430	100188919.0	Mm.473810	NM_001309430		Gm45915	Israa	predicted gene, 45915	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3922197-1	chr19	3922097	3922297	+	547.0	f1_balb.idr	intron (NM_026316, intron 2 of 9)	B1_Mus1|SINE|Alu	7519.0	NM_026316	67689.0	Mm.109341	NM_026316	ENSMUSG00000024885	Aldh3b1	1700001N19Rik|ALDH4|ALDH7	aldehyde dehydrogenase 3 family, member B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-34954392-4	chr18	34954312	34954512	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010481)	promoter-TSS (NM_010481)	-61.0	NM_010481	15526.0	Mm.209419	NM_010481	ENSMUSG00000024359	Hspa9	74kDa|Csa|Grp75|Hsc74|Hsp74|Hsp74a|Hspa9a|Mortalin|Mot-2|Mot2|Mthsp70|Pbp74	heat shock protein 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-94791562-2	chr12	94791462	94791662	+	623.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	864224.0	NR_106175	102465890.0		NR_106175	ENSMUSG00000098498	Mir8099-1	Gm27917|mmu-mir-8099-1	microRNA 8099-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46394562-3	chr19	46394474	46394674	+	874.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016860, intron 1 of 10)	intron (NM_016860, intron 1 of 10)	1161.0	NM_016860	54130.0	Mm.3118	NM_016860	ENSMUSG00000025228	Actr1a	Arp1|alpha-Arp1	ARP1 actin-related protein 1A, centractin alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-5234649-2	chr16	5234549	5234749	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145362, intron 1 of 12)	intron (NM_145362, intron 1 of 12)	1028.0	NM_145362	208211.0	Mm.34581	NM_145362	ENSMUSG00000039427	Alg1	HMAT1|HMT1	asparagine-linked glycosylation 1 (beta-1,4-mannosyltransferase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-103387587-4	chr5	103387513	103387713	+	806.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37579.0	NM_011204	19249.0	Mm.3414	NM_011204	ENSMUSG00000034573	Ptpn13	AI324989|PTP-BL|PTPL1|Ptpri|RIP	protein tyrosine phosphatase, non-receptor type 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-84275496-4	chr12	84275394	84275594	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-9802.0	NM_029880	77219.0	Mm.246127	NM_029880	ENSMUSG00000072946	Ptgr2	1810016I24Rik|9130222H03Rik|9630002F03Rik|AI838763|B830026H24Rik|PGR-2|PRG-2|Zadh1	prostaglandin reductase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-13869749-4	chr10	13869658	13869858	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347362)	promoter-TSS (NM_001347362)	-801.0	NM_001347362	66253.0	Mm.45755	NM_025446	ENSMUSG00000019806	Aig1	1500031O19Rik|AV064870|AW413422|CGI-103	androgen-induced 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-69810384-4	chr13	69810275	69810475	+	899.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138596, intron 1 of 3)	intron (NM_138596, intron 1 of 3)	493.0	NM_138596	28077.0	Mm.52583	NM_138596	ENSMUSG00000021598	Med10	AA959813|AI385605|C78613|D13Wsu50e	mediator complex subunit 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-112870980-4	chr12	112870855	112871055	+	932.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10039.0	NM_019925	56696.0	Mm.20455	NM_019925	ENSMUSG00000021298	Gpr132	G2a	G protein-coupled receptor 132	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-55664098-4	chr16	55663996	55664196	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	158042.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-43393424-4	chr5	43393297	43393497	+	875.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-122172.0	NM_001135172	109323.0	Mm.275553	NM_175425	ENSMUSG00000061535	C1qtnf7	5530401N20Rik|8430425G24Rik|Ctrp7	C1q and tumor necrosis factor related protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97107031-4	chr6	97106954	97107154	+	822.799988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41829.0	NM_175313	101351.0	Mm.116802	NM_175313	ENSMUSG00000035245	Eogt	A130022J15Rik|AI447490|AW214473|AW259391|Aer61	EGF domain-specific O-linked N-acetylglucosamine (GlcNAc) transferase	protein-coding	4.7244279443175	4.68998179567419	4.72925254628522	4.21137231785174	4.75898161067793	4.31276493322981	5.03443066914287	4.2324019628743	0.0291726665094734	0.938433514823682	0.998431161219273
Merged-chr5-64866827-3	chr5	64866729	64866929	+	790.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	63306.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-19411333-3	chr3	19411222	19411422	+	605.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-97273.0	NM_001163536	66326.0	Mm.45615	NM_025489	ENSMUSG00000027606	Dnajc5b	1700008A05Rik	DnaJ heat shock protein family (Hsp40) member C5 beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-79761352-1	chr1	79761252	79761452	+	620.0	f0_balb.idr	intron (NM_027057, intron 1 of 4)	CpG	417.0	NM_001111279	69368.0	Mm.293273	NM_027057	ENSMUSG00000073643	Wdfy1	1700013B03Rik|1700120F24Rik|FENS-1|Jr1|WDF1|ZFYVE17|mKIAA1435	WD repeat and FYVE domain containing 1	protein-coding	-0.0352919331828115	0.307452130337021	1.83270322892139	-0.0147639276430454	0.563471409804118	0.0149453294512035	0.000318425057375227	-0.012675019151705	-3.0035457497505	0.339646313129235	0.8404816361953
Merged-chr18-34140082-4	chr18	34139980	34140180	+	953.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M3|LINE|L1	-80904.0	NM_007462	11789.0	Mm.384171	NM_007462	ENSMUSG00000005871	Apc	AI047805|AU020952|AW124434|CC1|Min|mAPC	adenomatosis polyposis coli	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126498843-2	chr8	126498743	126498943	+	775.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-23778.0	NM_001159907	212728.0	Mm.482479	NM_001159907	ENSMUSG00000090290	Tarbp1	Gm17296|Gm179	TAR RNA binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-94465925-2	chr2	94465825	94466025	+	681.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27739.0	NM_001349003	11800.0	Mm.181824	NM_007466	ENSMUSG00000027193	Api5	AAC-11|AI196452|API-5	apoptosis inhibitor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-46160928-4	chr17	46160813	46161013	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019581)	promoter-TSS (NM_019581)	-119.0	NM_019581	56055.0	Mm.22147	NM_019581	ENSMUSG00000023952	Gtpbp2	nmf205	GTP binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100983675-3	chr11	100983558	100983758	+	877.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13041.0	NM_008986	19285.0	Mm.21864	NM_008986	ENSMUSG00000004044	Cavin1	2310075E07Rik|AW546441|Cav-p60|Cavin|Ptrf	caveolae associated 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-144213968-4	chr2	144213863	144214063	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB2|LINE|L1	-24673.0	NR_136884	433481.0	Mm.330630	NR_136884	ENSMUSG00000074758	Gm5535	EG433481	predicted gene 5535	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-21384874-4	chr5	21384862	21385062	+	771.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029195, intron 2 of 18)	intron (NM_029195, intron 2 of 18)	12289.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98412044-2	chr11	98411944	98412144	+	624.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001003817)	promoter-TSS (NM_001003817)	-440.0	NM_001003817	13866.0	Mm.290822	NM_001003817	ENSMUSG00000062312	Erbb2	Erbb-2|HER-2|HER2|Neu|c-erbB2|c-neu|l11Jus8|mKIAA3023	erb-b2 receptor tyrosine kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6488420-2	chr19	6488320	6488520	+	908.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205234, intron 11 of 22)	intron (NM_001205234, intron 11 of 22)	54650.0	NM_009203	20521.0	Mm.391146	NM_009203	ENSMUSG00000061742	Slc22a12	AI987855|OAT4L|Rst|Slc22al2|URAT1	solute carrier family 22 (organic anion/cation transporter), member 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-80141652-2	chr12	80141578	80141778	+	801.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8834.0	NR_033514	69548.0	Mm.269712	NR_033514		2310015A10Rik	5330419I17Rik	RIKEN cDNA 2310015A10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-30713811-2	chr13	30713711	30713911	+	567.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-35422.0	NM_001347508	16364.0	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-135545216-3	chr4	135545151	135545351	+	825.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013756, intron 15 of 15)	intron (NM_001013756, intron 15 of 15)	28369.0	NM_001013756	230824.0	Mm.331972	NM_001013756	ENSMUSG00000037188	Grhl3	AI561912|Get1|Som|Tfcp2l4|ct	grainyhead like transcription factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-125198607-3	chr8	125198589	125198789	+	748.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_174854, intron 9 of 12)	intron (NM_174854, intron 9 of 12)	144494.0	NM_174854	244667.0	Mm.233504	NM_170596	ENSMUSG00000043051	Disc1	-	disrupted in schizophrenia 1	protein-coding	2.7113104744055	1.49485422675464	1.42506998817249	2.32493832194046	3.19525446863078	4.12892909422531	4.81490275277444	3.28831252541828	3.11188743507506	4.10428894301397e-05	0.00148621505246323
Merged-chr13-108534416-2	chr13	108534316	108534516	+	595.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4A|LINE|L1	-119761.0	NM_011056	238871.0	Mm.434429	NM_011056	ENSMUSG00000021699	Pde4d	9630011N22Rik|Dpde3	phosphodiesterase 4D, cAMP specific	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-181527707-2	chr2	181527607	181527807	+	571.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271584, intron 2 of 5)	MLT1K|LTR|ERVL-MaLR	7222.0	NM_001271584	13002.0	Mm.140761	NM_016775	ENSMUSG00000000826	Dnajc5	2610314I24Rik|AU018536|Csp	DnaJ heat shock protein family (Hsp40) member C5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106659340-3	chr11	106659280	106659480	+	827.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001032378, intron 13 of 13)	intron (NM_001032378, intron 13 of 13)	-46450.0	NM_198292	21763.0	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-75494931-4	chr18	75494857	75495057	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201354, intron 9 of 11)	intron (NM_201354, intron 9 of 11)	-19688.0	NR_045879	100038353.0	Mm.440724	NR_045879	ENSMUSG00000097712	Gm10532	-	predicted gene 10532	ncRNA	3.2076274008288	2.3852090653684	1.43747304890973	2.81139566950636	3.11951891962088	1.49458400425661	2.71382906050514	3.27488803547935	0.35488445593907	0.694665846871034	0.997836418558882
Merged-chr11-22972400-2	chr11	22972300	22972500	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_011663, exon 1 of 1)	5' UTR (NM_011663, exon 1 of 1)	395.0	NM_011663	22183.0	Mm.29542	NM_011663	ENSMUSG00000044068	Zrsr1	D11Ncvs75|Irlgs2|SP2|U2af1-rs1|U2afbp-rs	zinc finger (CCCH type), RNA binding motif and serine/arginine rich 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-84981846-4	chr17	84981758	84981958	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159498, intron 2 of 7)	intron (NM_001159498, intron 2 of 7)	16833.0	NM_001159498	19043.0	Mm.249695	NM_011151	ENSMUSG00000061130	Ppm1b	PP2CB	protein phosphatase 1B, magnesium dependent, beta isoform	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131020648-2	chr1	131020548	131020748	+	690.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010548, intron 1 of 4)	intron (NM_010548, intron 1 of 4)	803.0	NM_010548	16153.0	Mm.874	NM_010548	ENSMUSG00000016529	Il10	CSIF|Il-10	interleukin 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-170118364-2	chr2	170118264	170118464	+	877.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033299, intron 2 of 5)	intron (NM_001033299, intron 2 of 5)	12856.0	NM_001033299	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-110481190-1	chr8	110481090	110481290	+	725.666687	f0_c57.idr	intron (NM_172916, intron 24 of 86)	LTR16A1|LTR|ERVL	21166.0	NR_105058	100861869.0	Mm.84499	NR_105058		Gm21283	-	predicted gene, 21283	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-3102542-4	chr17	3102452	3102652	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12420.0	NM_134123	106583.0	Mm.124373	NM_134123	ENSMUSG00000046201	Scaf8	A630086M08Rik|A930036P18Rik|AA408306|AI447644|AI448652|AU015035|Rbm16|mKIAA1116	SR-related CTD-associated factor 8	protein-coding	2.65067553856611	2.90440254478517	2.45324529468798	1.50685772825025	1.93884151269495	1.3290785444708	2.47316338341683	1.8900121821476	-1.15278174013457	0.227910427642115	0.72106957756012
Merged-chr3-135688578-2	chr3	135688478	135688678	+	606.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008689, intron 1 of 24)	intron (NM_008689, intron 1 of 24)	2969.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-47353180-3	chr14	47353181	47353381	+	819.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-20579.0	NM_010705	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129823456-4	chr4	129823371	129823571	+	970.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164745, intron 1 of 5)	intron (NM_001164745, intron 1 of 5)	2763.0	NM_001164745	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	1.84964292595363	1.08970867382603	0.791598634009764	0.77350509300628	1.7787295476917	2.54949463971794	1.27146571216205	0.776709253424393	1.60048980978201	0.240029527728869	0.736540734959326
Merged-chr12-3902194-2	chr12	3902094	3902294	+	610.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153743, intron 12 of 17)	intron (NM_153743, intron 12 of 17)	10450.0	NM_153743	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-38828-1	chr4	38728	38928	+	869.0	f1_c57bl6.idr	Intergenic	Intergenic	-3133255.0	NM_001167534	100312470.0	Mm.480297	NM_001167534	ENSMUSG00000115072	Vmn1r2	Gm11776	vomeronasal 1 receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75531612-4	chr11	75531519	75531719	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173388)	promoter-TSS (NM_173388)	-75.0	NM_001199284	215113.0	Mm.11186	NM_173388	ENSMUSG00000038178	Slc43a2	7630402D21Rik|BC042513|Lat4	solute carrier family 43, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-103228633-4	chr9	103228639	103228839	+	615.125	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133977, intron 1 of 16)	intron (NM_133977, intron 1 of 16)	1547.0	NM_133977	22041.0	Mm.37214	NM_133977	ENSMUSG00000032554	Trf	AI266983|Cd176|HP|Tf|Tfn|hpx	transferrin	protein-coding	1.39878557020509	0.609251106585929	0.597587160526508	0.588479276973592	1.0252991760334	1.54633838543225	1.37761399488402	0.590077444854524	1.38058854517514	0.401992663355842	0.887470800099986
Merged-chr4-132804643-4	chr4	132804544	132804744	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8280.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-61680234-2	chr14	61680134	61680334	+	866.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_028264, intron 1 of 6)	intron (NR_028264, intron 1 of 6)	2139.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-93152665-4	chr5	93152507	93152707	+	904.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001009818, intron 3 of 9)	intron (NM_001009818, intron 3 of 9)	53888.0	NM_017367	12453.0	Mm.250419	NM_017367	ENSMUSG00000063015	Ccni	-	cyclin I	protein-coding	-1.23903428676898	-1.21247619063903	-0.773796758324356	-1.0691861411012	-1.23858656970828	-1.21019279803287	-1.22062777608213	-1.23011913398008	-2.46136296935986	0.456349361189979	1
Merged-chr18-5805777-4	chr18	5805657	5805857	+	952.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	AmnSINE2|SINE|Deu	213110.0	NM_001360981	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-5334507-3	chr9	5334384	5334584	+	825.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007609, intron 7 of 8)	ORR1A4-int|LTR|ERVL-MaLR	-10992.0	NM_009808	12364.0	Mm.42163	NM_009808	ENSMUSG00000025887	Casp12	-	caspase 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124478164-4	chr6	124478077	124478277	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13393.0	NM_153508	232370.0	Mm.193701	NM_153508	ENSMUSG00000008153	Clstn3	CSTN3|Cs3|Cst-3|alc-beta	calsyntenin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-84337730-4	chr3	84337615	84337815	+	747.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32940.0	NM_001271726	80890.0	Mm.44876	NM_030706	ENSMUSG00000027993	Trim2	mKIAA0517|narf	tripartite motif-containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-60822367-3	chr2	60822263	60822463	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001141932, intron 2 of 14)	intron (NM_001141932, intron 2 of 14)	59075.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-154301782-2	chr4	154301682	154301882	+	669.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1887.0	NM_001112744	230972.0	Mm.38481	NM_001112744	ENSMUSG00000029032	Arhgef16	-	Rho guanine nucleotide exchange factor (GEF) 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-98270547-4	chr12	98270447	98270647	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008152, intron 1 of 1)	L1MEd|LINE|L1	1912.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-45454320-4	chr10	45454225	45454425	+	898.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001031772, intron 2 of 4)	intron (NM_001031772, intron 2 of 4)	15876.0	NM_001031772	380669.0	Mm.440328	NM_001031772	ENSMUSG00000063804	Lin28b	2810403D23Rik|D030047M17Rik|Lin-28.2	lin-28 homolog B (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-51353526-2	chr3	51353426	51353626	+	972.416626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-12882.0	NM_023502	69257.0	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-16943700-4	chr6	16943594	16943794	+	856.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45253.0	NM_031198	21426.0	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94908799-2	chr10	94908699	94908899	+	684.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_018797, intron 3 of 30)	intron (NM_018797, intron 3 of 30)	35779.0	NM_018797	54712.0	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32876078-4	chr2	32875965	32876165	+	991.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146119)	promoter-TSS (NM_146119)	-69.0	NM_146119	227737.0	Mm.301646	NM_146119	ENSMUSG00000026796	Fam129b	9130404D14Rik	family with sequence similarity 129, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-111536519-4	chr8	111536426	111536626	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001168621)	promoter-TSS (NM_001168621)	-114.0	NM_001168622	170737.0	Mm.271578	NM_133206	ENSMUSG00000033545	Znrf1	B830022L21Rik|Rnf42|Zrfp1|nin283	zinc and ring finger 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-62232817-4	chr18	62232713	62232913	+	737.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52713.0	NM_001013754	225609.0	Mm.296917	NM_001013754	ENSMUSG00000054589	Gm9949	EG225609	predicted gene 9949	protein-coding	4.20458299672707	3.18164038994468	3.70779736482695	4.36707764680776	2.71830089125712	3.42996957818265	2.673849461144	3.55108212016215	-1.20358649986474	0.0349024903673118	0.264257517518095
Merged-chr1-53848301-4	chr1	53848189	53848389	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001883, intron 21 of 28)	LTR31|LTR|ERV1	-1135.0	NR_106149	102465783.0		NR_106149	ENSMUSG00000098443	Mir7681	Gm27806|mmu-mir-7681	microRNA 7681	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88645979-2	chr3	88645891	88646091	+	865.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001198913, intron 20 of 21)	intron (NM_001198913, intron 20 of 21)	7151.0	NM_181817	242093.0	Mm.269130	NM_181817	ENSMUSG00000049741	Rxfp4	GPCR142|Gpr100|Rln3r2|SALPR	relaxin family peptide receptor 4	protein-coding	2.05802348314238	2.21761436416166	1.89707434246288	1.12542094678314	1.63016052340848	2.34288311541751	2.26029430069356	1.1290062912726	0.124505520288855	0.911128063497836	0.998431161219273
Merged-chr6-54944750-2	chr6	54944650	54944850	+	806.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_172729, exon 4 of 12)	exon (NM_172729, exon 4 of 12)	26911.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27074465-4	chr17	27074367	27074567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080553, intron 2 of 57)	intron (NM_080553, intron 2 of 57)	-16778.0	NR_106142	102465779.0		NR_106142	ENSMUSG00000098826	Mir7677	Gm27400|mmu-mir-7677	microRNA 7677	ncRNA	-0.961808289013217	-0.941143281918953	-0.953353259954851	-0.9565109400711	-0.961015840561242	-0.938024035002784	0.030272756003758	-0.955957512668286	3.38343409954699	0.275427317743097	1
Merged-chr10-31608886-2	chr10	31608789	31608989	+	597.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_001146349, exon 1 of 6)	exon (NM_001146349, exon 1 of 6)	836.0	NM_001146349	268291.0	Mm.295212	NM_001146349	ENSMUSG00000063760	Rnf217	AU016819|Ibrdc1	ring finger protein 217	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-39843428-5	chr17	39843256	39843456	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_046233, exon 1 of 1)	non-coding (NR_046233, exon 1 of 1)	359.0	NR_046233	100861531.0		NR_046233		Rn45s	-	45S pre-ribosomal RNA	rRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-13429598-2	chr9	13429498	13429698	+	744.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1763.0	NR_028271	18689.0	Mm.41972	NM_008835	ENSMUSG00000031802	Phxr4	Sp5	per-hexamer repeat gene 4	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-120114830-3	chr6	120114709	120114909	+	866.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016718, intron 1 of 3)	intron (NM_016718, intron 1 of 3)	21429.0	NM_016718	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-34867819-4	chr6	34867746	34867946	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197986, intron 1 of 1)	intron (NM_197986, intron 1 of 1)	4700.0	NM_197986	68487.0	Mm.248440	NM_197986	ENSMUSG00000057137	Tmem140	1110007F12Rik	transmembrane protein 140	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117871775-2	chr11	117871675	117871875	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027919, intron 1 of 6)	intron (NM_027919, intron 1 of 6)	1751.0	NM_027919	71776.0	Mm.3200	NM_027919	ENSMUSG00000017713	Tha1	1300017K07Rik|GLY1	threonine aldolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-26626215-3	chr16	26626071	26626271	+	927.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152416, intron 2 of 12)	intron (NR_152416, intron 2 of 12)	44466.0	NM_008364	16180.0	Mm.253424	NM_008364	ENSMUSG00000022514	Il1rap	6430709H04Rik|AI255955|AV239853|IL-1RAcP	interleukin 1 receptor accessory protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-7955755-4	chr5	7955639	7955839	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4733.0	NM_054098	117167.0	Mm.31403	NM_054098	ENSMUSG00000012428	Steap4	1110021O17Rik|AI481214|Tiarp|Tnfaip9	STEAP family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-85988510-4	chr1	85988405	85988605	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27450.0	NM_001033290	227326.0	Mm.244158	NM_001033290	ENSMUSG00000049608	Gpr55	CTFL|Gm218|Lpir1	G protein-coupled receptor 55	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-39650553-4	chr18	39650467	39650667	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-122930.0	NM_011033	18459.0	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-172420630-4	chr2	172420559	172420759	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080820, intron 2 of 6)	intron (NM_001080820, intron 2 of 6)	-19919.0	NM_025542	66404.0	Mm.25157	NM_025542	ENSMUSG00000027502	Rtf2	1700067C04Rik|2410001C21Rik|5730427M17Rik|AA589417|Rtfdc1	replication termination factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150495712-4	chr4	150495628	150495828	+	872.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 7 of 22)	intron (NM_001085492, intron 7 of 22)	156446.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-184169417-4	chr1	184169323	184169523	+	773.912476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	135042.0	NM_022019	63953.0	Mm.404024	NM_022019	ENSMUSG00000039384	Dusp10	2610306G15Rik|AI158871|MKP-5|MKP5	dual specificity phosphatase 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83191725-2	chr11	83191625	83191825	+	723.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_011409, intron 1 of 2)	intron (NM_011409, intron 1 of 2)	395.0	NM_011409	20557.0	Mm.290922	NM_011409	ENSMUSG00000018986	Slfn3	-	schlafen 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132800677-2	chr4	132800577	132800777	+	603.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-4313.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-95752704-4	chr16	95752601	95752801	+	966.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50294.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-26210586-2	chr11	26210486	26210686	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027973)	promoter-TSS (NR_027973)	-10.0	NR_027973	70626.0	Mm.379180	NM_027486		5730522E02Rik	-	RIKEN cDNA 5730522E02 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78514848-2	chr15	78514748	78514948	+	602.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	14803.0	NM_001204153	72709.0	Mm.34776	NM_028331	ENSMUSG00000022440	C1qtnf6	2810036M19Rik|CTRP6	C1q and tumor necrosis factor related protein 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-36483959-3	chr5	36483855	36484055	+	965.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025725)	promoter-TSS (NM_025725)	330.0	NM_001170454	231151.0	Mm.421558	NM_001170454	ENSMUSG00000029196	Tada2b	AA474455|Gm145	transcriptional adaptor 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-99928429-2	chr10	99928329	99928529	+	581.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-87392.0	NM_001347156	17311.0	Mm.45124	NM_013598	ENSMUSG00000019966	Kitl	Clo|Con|Gb|Kitlg|Mgf|SCF|SF|SLF|Sl|blz|contrasted	kit ligand	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-145231767-4	chr5	145231670	145231870	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001083958)	promoter-TSS (NM_001083958)	11.0	NM_028298	72611.0	Mm.206555	NM_028298	ENSMUSG00000007812	Zfp655	2700038I16Rik|9030409O18Rik|mKIAA4222	zinc finger protein 655	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-30949489-2	chr16	30949436	30949636	+	623.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	131896.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-50363751-3	chr14	50363647	50363847	+	879.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_205819)	TTS (NM_205819)	5833.0	NM_205819	239081.0	Mm.291512	NM_205819	ENSMUSG00000051969	Tlr11	Gm287	toll-like receptor 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129623041-2	chr4	129622941	129623141	+	675.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025455, intron 1 of 5)	intron (NM_025455, intron 1 of 5)	867.0	NM_025455	66264.0	Mm.383215	NM_025455	ENSMUSG00000028795	Ccdc28b	1110002E08Rik|1810010N17Rik	coiled coil domain containing 28B	protein-coding	0.262679092675125	0.731517319506696	0.00826014508419193	0.00407893024291767	0.269310942678011	0.373930925150444	0.00945536565111382	0.00480941264763118	-0.878694461005127	0.675205581615238	1
Merged-chr15-76694178-1	chr15	76694078	76694278	+	786.0	f1_c57bl6.idr	intron (NR_152559, intron 8 of 8)	intron (NR_152559, intron 8 of 8)	-2548.0	NM_182805	76282.0	Mm.30130	NM_182805	ENSMUSG00000022546	Gpt	1300007J06Rik|2310022B03Rik|ALT|ALT1|Gpt-1|Gpt1	glutamic pyruvic transaminase, soluble	protein-coding	0.757063767568678	1.02132943460372	1.07254289340481	0.375929612220117	0.868245462568734	0.391350012794267	0.383604692038518	0.376974052305812	-1.83238857369586	0.320101533395773	1
Merged-chr14-54405441-4	chr14	54405338	54405538	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011405, intron 4 of 11)	L1M2|LINE|L1	4034.0	NM_001253680	20540.0	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-155775450-2	chr4	155775350	155775550	+	702.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_147776)	promoter-TSS (NM_147776)	-889.0	NM_147776	246228.0	Mm.26515	NM_147776	ENSMUSG00000042116	Vwa1	4932416A11Rik|WARP	von Willebrand factor A domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-59967375-4	chr10	59967279	59967479	+	980.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15609.0	NM_029083	74747.0	Mm.21697	NM_029083	ENSMUSG00000020108	Ddit4	5830413E08Rik|AA415483|REDD1|Rtp801|dig2	DNA-damage-inducible transcript 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69135389-2	chr11	69135158	69135358	+	897.7000119999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_011786, intron 11 of 14)	intron (NM_011786, intron 11 of 14)	8881.0	NM_011786	23801.0	Mm.41989	NM_011786	ENSMUSG00000020892	Aloxe3	e-LOX-3|eLOX-3	arachidonate lipoxygenase 3	protein-coding	-0.104582739040793	-0.439662743067688	-0.442998464781686	-0.445557741189889	-0.00476129607861692	-0.438907935911614	-0.44226454670309	-0.161091270916377	1.09043963333947	0.676597765220411	1
Merged-chr8-123292934-1	chr8	123292834	123293034	+	690.0	f1_balb.idr	intron (NM_016925, intron 20 of 42)	ORR1B1|LTR|ERVL-MaLR	25642.0	NM_016925	14087.0	Mm.6536	NM_016925	ENSMUSG00000032815	Fanca	AW208693|FACA	Fanconi anemia, complementation group A	protein-coding	-0.163742363831661	-0.144877313116822	-0.151010265422676	-0.155773106949531	0.774182075052065	-0.143500964465355	-0.14965374287423	0.54084769181575	4.07959231957881	0.0856406708315746	1
Merged-chr15-102326147-4	chr15	102326027	102326227	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027044)	promoter-TSS (NM_027044)	11.0	NM_027044	56612.0	Mm.158264	NM_020031	ENSMUSG00000001289	Pfdn5	1190001O17Rik|1700010A06Rik|D15Ertd697e|Eig1|MM-1	prefoldin 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107264050-4	chr9	107263941	107264141	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316691, intron 1 of 7)	intron (NM_001316691, intron 1 of 7)	25355.0	NM_001316691	102626.0	Mm.222612	NM_178907	ENSMUSG00000032577	Mapkapk3	3PK|AI874665|MAPKAP-K3|MAPKAP3|MK-3|MK3|MapkKapk3	mitogen-activated protein kinase-activated protein kinase 3	protein-coding	1.31818998547641	1.27126164264437	0.677996503045387	0.475100151313081	0.995630582022125	0.494189287851297	0.683780932340759	0.476401161631179	-1.56349707568182	0.349614570604876	1
Merged-chr18-61113016-3	chr18	61112910	61113110	+	870.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037859, intron 6 of 21)	intron (NM_001037859, intron 6 of 21)	-4458.0	NR_105949	102466212.0		NR_105949	ENSMUSG00000098389	Mir6983	Gm27496|mmu-mir-6983	microRNA 6983	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-88240772-3	chr1	88240613	88240813	+	724.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001281466, exon 17 of 42)	exon (NM_001281466, exon 17 of 42)	13693.0	NM_001281466	100040766.0	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	Heatr7b1	maestro heat-like repeat family member 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21012495-2	chr9	21012395	21012595	+	645.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3445.0	NM_010493	15894.0	Mm.435508	NM_010493	ENSMUSG00000037405	Icam1	CD54|Icam-1|Ly-47|MALA-2	intercellular adhesion molecule 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-40294576-4	chr1	40294493	40294693	+	901.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001123382, intron 4 of 10)	intron (NM_001123382, intron 4 of 10)	28007.0	NM_001123382	16177.0	Mm.896	NM_008362	ENSMUSG00000026072	Il1r1	CD121a|CD121b|IL-1R1|IL-iR|Il1r-1	interleukin 1 receptor, type I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-112735243-4	chr13	112735134	112735334	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_178746, exon 15 of 15)	3' UTR (NM_178746, exon 15 of 15)	-65543.0	NM_008903	19012.0	Mm.291029	NM_008247	ENSMUSG00000021759	Plpp1	Hic53|Hpic53|LPP-1|LPP1|PAP-2a|PAP2-alpha|PAP2a|Ppap2a|mPAP	phospholipid phosphatase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-61180388-3	chr6	61180311	61180511	+	986.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164316)	promoter-TSS (NM_001164316)	86.0	NM_183310	232035.0	Mm.150324	NM_183310	ENSMUSG00000039578	Ccser1	6230405M12Rik|C130092O11Rik|Fam190a	coiled-coil serine rich 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115675781-4	chr11	115675694	115675894	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001313936, intron 2 of 5)	intron (NM_001313936, intron 2 of 5)	23740.0	NM_001313937	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27586873-3	chr17	27586776	27586976	+	735.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291046, intron 2 of 4)	PB1D9|SINE|Alu	-21149.0	NM_001002895	106672.0	Mm.61488	NM_001002895	ENSMUSG00000062753	AI413582	AI854251|Smim29	expressed sequence AI413582	protein-coding	2.6361006920948	4.04324209536112	2.61652257908027	3.31046701968959	2.42321813303739	2.73214971406488	2.77059301292064	2.90500900854167	-1.00214087820214	0.146609302338109	0.596697708151776
Merged-chr14-118947374-4	chr14	118947267	118947467	+	975.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008929, intron 1 of 11)	intron (NM_008929, intron 1 of 11)	9435.0	NM_008929	100037258.0	Mm.12616	NM_008929	ENSMUSG00000022136	Dnajc3	AA408985|AU067833|Dnajc3a|Dnajc3b|Prkri|mp58|p58|p58IPK	DnaJ heat shock protein family (Hsp40) member C3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-94351272-2	chr11	94351172	94351372	+	672.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_029600, intron 28 of 30)	intron (NM_029600, intron 28 of 30)	23271.0	NM_146024	71452.0	Mm.141054	NM_027799	ENSMUSG00000020864	Ankrd40	1110011C06Rik|5530600A18Rik|Gcap15	ankyrin repeat domain 40	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-88219202-2	chr1	88219081	88219281	+	604.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_201410)	TTS (NM_201410)	7222.0	NM_201645	394436.0	Mm.300095	NM_201645	ENSMUSG00000089960	Ugt1a1	Gnt1|UDPGT 1-1|UGT1A01|Udpgt-1a|UgtBr1	UDP glucuronosyltransferase 1 family, polypeptide A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-54642564-3	chr4	54642460	54642660	+	946.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-305385.0	NM_172867	242466.0	Mm.102904	NM_172867	ENSMUSG00000060206	Zfp462	6030417H05|9430078C22Rik|Gt4-2|Zfpip	zinc finger protein 462	protein-coding	0.714854213946352	0.873424227634148	0.825809321476818	0.78642064515642	2.94277236739054	3.56997941807778	3.44531821946879	0.793485264421427	6.42598576276194	0.00505433328275474	0.0675801159656293
Merged-chr8-41395499-3	chr8	41395409	41395609	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA4|LINE|L1	-20812.0	NM_019734	11886.0	Mm.22547	NM_019734	ENSMUSG00000031591	Asah1	2310081N20Rik|AC|Asah	N-acylsphingosine amidohydrolase 1	protein-coding	0.908813749067446	1.02522769300184	0.989482468352589	0.96041688747398	2.97833587414167	2.13410728607597	2.67943071007606	2.66335486167007	5.99340515594655	3.02471060733514e-06	0.000167049777269067
Merged-chr1-180988329-1	chr1	180988229	180988429	+	545.0	f1_balb.idr	Intergenic	Intergenic	29240.0	NM_001312918	13849.0	Mm.9075	NM_010145	ENSMUSG00000038776	Ephx1	EH|Eph-1|Eph1|Epxh1|mEH	epoxide hydrolase 1, microsomal	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-31239379-4	chr2	31239316	31239516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CGTG)n|Simple_repeat|Simple_repeat	-6507.0	NM_019681	14299.0	Mm.249318	NM_019681	ENSMUSG00000062661	Ncs1	9430075O15Rik|A730032G13Rik|AI836659|Freq|Mfreq|NCS-1	neuronal calcium sensor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80402793-2	chr10	80402693	80402893	+	742.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_025650)	TTS (NM_025650)	-3262.0	NM_001306143	17192.0	Mm.7142	NM_013595	ENSMUSG00000035478	Mbd3	AI181826|AU019209	methyl-CpG binding domain protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-107744032-2	chr13	107743932	107744132	+	751.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_145456, exon 7 of 15)	exon (NM_145456, exon 7 of 15)	56635.0	NR_045900	72257.0	Mm.234155	NR_045900	ENSMUSG00000102000	1700006H21Rik	-	RIKEN cDNA 1700006H21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-138138873-2	chr1	138138773	138138973	+	774.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001268286, intron 2 of 28)	intron (NM_001268286, intron 2 of 28)	36253.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-64098481-9	chr15	64098397	64098597	+	819.685181	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 26 of 28)	intron (NM_001276461, intron 26 of 28)	-38049.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-11003834-2	chr16	11003734	11003934	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-5064.0	NR_040518	100043147.0	Mm.489001	NR_040518	ENSMUSG00000097056	Gm4262	-	predicted gene 4262	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-17404250-3	chr14	17404153	17404353	+	624.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-256707.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-86836560-4	chr11	86836464	86836664	+	932.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28904.0	NM_026191	67487.0	Mm.260627	NM_026191	ENSMUSG00000018425	Dhx40	2410016C14Rik|ARG147|DDX40|PAD	DEAH (Asp-Glu-Ala-His) box polypeptide 40	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100910349-2	chr7	100910249	100910449	+	719.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081116, intron 1 of 20)	intron (NM_001081116, intron 1 of 20)	21812.0	NM_001081116	207212.0	Mm.29954	NM_001081116	ENSMUSG00000032875	Arhgef17	8030463K16|AI428794|AW558066|BC035332|mKIAA0337	Rho guanine nucleotide exchange factor (GEF) 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-66989079-2	chr9	66988979	66989179	+	580.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13595.0	NM_030717	80907.0	Mm.157882	NM_030717	ENSMUSG00000032370	Lactb	LACT-1|Lact1|Mrpl56	lactamase, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-45076841-3	chr19	45076718	45076918	+	965.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001362398, exon 3 of 6)	exon (NM_001362398, exon 3 of 6)	731.0	NM_001362397	107250.0	Mm.24417	NM_178929	ENSMUSG00000025213	Kazald1	AI842353|Bono1|IGFBP-rP10	Kazal-type serine peptidase inhibitor domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-144135244-2	chr3	144135144	144135344	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER21A|LTR|ERV1	67088.0	NM_001161770	16911.0	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59383168-2	chr15	59383068	59383268	+	557.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164604, intron 2 of 4)	ORR1D1|LTR|ERVL-MaLR	8970.0	NM_001164604	68501.0	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-58462462-3	chr4	58462387	58462587	+	743.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172989, intron 3 of 3)	intron (NM_172989, intron 3 of 3)	-21389.0	NR_037278	100526502.0		NR_037278	ENSMUSG00000093293	Mir3095	mir-3095|mmu-mir-3095	microRNA 3095	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-89342134-6	chr7	89342021	89342221	+	917.955566	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360746, intron 2 of 14)	intron (NM_001360746, intron 2 of 14)	-3334.0	NM_001360745	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128211848-4	chr10	128211734	128211934	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025716)	promoter-TSS (NM_025716)	-40.0	NM_025716	66701.0	Mm.29694	NM_025716	ENSMUSG00000051346	Spryd4	4633402N23Rik|AA114801	SPRY domain containing 4	protein-coding	2.995252042315	3.47481097993604	3.26049016053167	4.25868951604961	4.09288837801189	2.11176211237482	3.28677193280929	3.72946829161346	-0.134791787369144	0.833367231105069	0.998431161219273
Merged-chr16-27388998-4	chr16	27388925	27389125	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026202)	promoter-TSS (NM_026202)	69.0	NM_001289436	67501.0	Mm.258985	NM_026202	ENSMUSG00000038127	Ccdc50	C3orf6	coiled-coil domain containing 50	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-68882343-1	chr8	68882243	68882443	+	705.0	f1_c57bl6.idr	intron (NM_008509, intron 1 of 9)	intron (NM_008509, intron 1 of 9)	1788.0	NM_008509	16956.0	Mm.1514	NM_008509	ENSMUSG00000015568	Lpl	-	lipoprotein lipase	protein-coding	0.316686906985793	0.57080716467307	1.37775331498151	0.822204041902486	0.31860826246468	1.05630888722854	0.339248875584564	0.330828283051216	-1.40772408741912	0.44226155589815	1
Merged-chr12-102459285-2	chr12	102459185	102459385	+	842.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9849.0	NM_001199004	27277.0	Mm.273370	NM_013747	ENSMUSG00000021192	Golga5	Ret-II	golgi autoantigen, golgin subfamily a, 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-127793464-7	chr3	127793461	127793661	+	949.404785	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356430, intron 2 of 2)	intron (NM_001356430, intron 2 of 2)	2904.0	NM_001356430	211550.0	Mm.31852	NM_145133	ENSMUSG00000046688	Tifa	T2bp	TRAF-interacting protein with forkhead-associated domain	protein-coding	0.920748322445658	0.978245241888613	1.52358729922184	1.1558993408956	1.98751054411229	1.9765509963739	1.67336420335529	1.7341725019724	2.56916270252472	0.0397607381497827	0.283845301262055
Merged-chr5-34773584-4	chr5	34773492	34773692	+	814.979187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010414, intron 1 of 66)	RMER1B|Other|Other	11852.0	NM_010414	15194.0	Mm.209071	NM_010414	ENSMUSG00000029104	Htt	AI256365|C430023I11Rik|Hd|Hdh|IT15	huntingtin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-6689915-2	chr2	6689815	6690015	+	661.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110232, intron 4 of 15)	RSINE1|SINE|B4	31747.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123697427-2	chr5	123697323	123697523	+	970.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_027494)	TTS (NM_027494)	-13062.0	NM_001359222	56430.0	Mm.241109	NM_019765	ENSMUSG00000049550	Clip1	1110007I12Rik|4631429H07Rik|AV017631|C81039|CLIP-170|CLIP170|CYLN1|Clip50|Rsn|mKIAA4046|restin	CAP-GLY domain containing linker protein 1	protein-coding	-1.36015291771705	-1.32842431658676	-1.33874579108173	-1.34722415754512	-1.35969949349639	-1.32618761000664	-1.33640923549635	-0.791042329471244	2.42373733289067	0.484013421080845	1
Merged-chr3-90083183-2	chr3	90083075	90083275	+	715.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357581, intron 1 of 8)	intron (NM_001357581, intron 1 of 8)	3654.0	NM_001293749	59069.0	Mm.240839	NM_022314	ENSMUSG00000027940	Tpm3	TM30nm|TMnm|Tm5NM|Tpm-5|Tpm5|Trop-5|gamma-TM|hTM30nm|hTMnm	tropomyosin 3, gamma	protein-coding	-0.805973203378779	-0.797388214505819	-0.363357823140079	-0.802386007157194	-0.666017165138475	-0.795319522673875	-0.799592265246914	-0.50709519835695	-0.163428436798792	0.954123665094914	1
Merged-chr13-102645028-3	chr13	102644934	102645134	+	852.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48513.0	NM_001360519	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-69973789-4	chr8	69973698	69973898	+	828.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286450, intron 1 of 12)	CpG	585.0	NM_001113346	234366.0	Mm.270044	NM_145596	ENSMUSG00000036180	Gatad2a	1110066C11Rik|BC031407|C80248	GATA zinc finger domain containing 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-108998107-2	chr9	108998007	108998207	+	741.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153430, intron 1 of 13)	intron (NR_153430, intron 1 of 13)	6205.0	NR_153430	270198.0	Mm.132391	NM_173019	ENSMUSG00000025648	Pfkfb4	C230090D14	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-29623533-6	chr2	29623474	29623674	+	991.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054050, intron 1 of 23)	intron (NM_054050, intron 1 of 23)	3854.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-118260015-4	chr2	118259926	118260126	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-3060.0	NM_027759	71313.0	Mm.85046	NM_027759	ENSMUSG00000027344	Fsip1	1700012M13Rik|4933432K11Rik	fibrous sheath-interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-61913291-2	chr9	61913191	61913391	+	819.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_018853)	TTS (NM_018853)	1219.0	NM_018853	56040.0	Mm.3158	NM_018853	ENSMUSG00000007892	Rplp1	2410042H16Rik|Arpp1|C430017H15Rik	ribosomal protein, large, P1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-130922139-4	chr4	130922005	130922205	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010686, intron 1 of 7)	intron (NM_010686, intron 1 of 7)	8771.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132261595-4	chr4	132261503	132261703	+	969.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020273)	promoter-TSS (NM_020273)	-54.0	NM_001122992	56809.0	Mm.103489	NM_020273	ENSMUSG00000028901	Gmeb1	1110050A04Rik|AI256615|AI481278	glucocorticoid modulatory element binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-24596790-5	chr5	24596747	24596947	+	975.3466800000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_025891, exon 3 of 13)	exon (NM_025891, exon 3 of 13)	4733.0	NR_030423	735264.0		NR_030423	ENSMUSG00000076387	Mir671	Mirn671|mmu-mir-671	microRNA 671	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-88553197-2	chr17	88553097	88553297	+	809.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028658, intron 7 of 21)	intron (NM_028658, intron 7 of 21)	23073.0	NM_028658	73825.0	Mm.271817	NM_028658	ENSMUSG00000034709	Ppp1r21	1110018J12Rik|AI426045|AW550781|Ccdc128|Klraq1	protein phosphatase 1, regulatory subunit 21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-156303212-1	chr1	156303112	156303312	+	802.0	f1_balb.idr	intron (NM_001277730, intron 1 of 17)	CpG	136.0	NM_001134741	214575.0	Mm.252800	NM_001134741	ENSMUSG00000060985	Tdrd5	Gm103	tudor domain containing 5	protein-coding	0.327145576169213	0.546217500291328	0.504199078819404	0.0055897825601495	0.00142869009794636	0.013345462289946	0.00942117601711448	0.00610779806996381	-3.92473635492001	0.0769543084896626	1
Merged-chr10-67643889-4	chr10	67643772	67643972	+	921.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-71913.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134021013-4	chr6	134020901	134021101	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14699.0	NM_001303102	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	4.23503047591759	3.85975186476518	5.11532455806137	3.91440899850129	3.92614506145298	4.12103438316639	4.1207336260488	3.25968784149261	-0.657979346563106	0.172601820285788	0.640477311274911
Merged-chr2-51014455-4	chr2	51014363	51014563	+	976.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	104779.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-5592056-4	chr13	5591964	5592164	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	266028.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-37999270-2	chr15	37999170	37999370	+	603.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001112721, intron 36 of 58)	intron (NM_001112721, intron 36 of 58)	-38215.0	NM_199476	382985.0	Mm.24738	NM_199476	ENSMUSG00000022292	Rrm2b	p53R2	ribonucleotide reductase M2 B (TP53 inducible)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-35546931-4	chr9	35546816	35547016	+	968.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013932, exon 9 of 12)	exon (NM_013932, exon 9 of 12)	11554.0	NM_013932	30959.0	Mm.291723	NM_013932	ENSMUSG00000032101	Ddx25	AW047046|GRTH	DEAD (Asp-Glu-Ala-Asp) box polypeptide 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5929176-4	chr17	5929030	5929230	+	851.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025664, intron 17 of 17)	intron (NM_025664, intron 17 of 17)	-12150.0	NM_001113353	20975.0	Mm.236068	NM_011523	ENSMUSG00000023805	Synj2	AI481647|SJ2|mKIAA0348	synaptojanin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118926271-6	chr9	118926132	118926332	+	818.422241	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133710)	promoter-TSS (NM_133710)	-304.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	2.23429047048395	3.11399867686155	1.39083291731129	2.50107477120142	2.78356841843402	3.91615701448257	2.93639363366325	1.63792177781947	1.09004755332845	0.213472762837979	0.703038353542171
Merged-chr7-16810521-2	chr7	16810421	16810621	+	838.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_173430, exon 3 of 3)	exon (NM_173430, exon 3 of 3)	-5368.0	NM_133789	97387.0	Mm.21612	NM_133789	ENSMUSG00000030374	Strn4	C80611|ZIN|zinedin	striatin, calmodulin binding protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-86815881-2	chr11	86815781	86815981	+	691.583374	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR6_Mm|LTR|ERV1	-8221.0	NM_026191	67487.0	Mm.260627	NM_026191	ENSMUSG00000018425	Dhx40	2410016C14Rik|ARG147|DDX40|PAD	DEAH (Asp-Glu-Ala-His) box polypeptide 40	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-128070173-2	chr7	128070073	128070273	+	571.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008401, intron 3 of 29)	B1_Mur1|SINE|Alu	7533.0	NM_008401	16409.0	Mm.262106	NM_008401	ENSMUSG00000030786	Itgam	CD11b/CD18|CR3|CR3A|Cd11b|F730045J24Rik|Ly-40|MAC1|Mac-1|Mac-1a	integrin alpha M	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126595040-4	chr7	126594974	126595174	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145636)	promoter-TSS (NM_145636)	-164.0	NM_145636	246779.0	Mm.222632	NM_145636	ENSMUSG00000044701	Il27	IL-27|IL-27p28|Il30|p28	interleukin 27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-78374882-2	chr10	78374782	78374982	+	567.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23182.0	NM_053014	28169.0	Mm.141230	NM_053014	ENSMUSG00000001211	Agpat3	AW061257|AW493985|D10Jhu12e|lpaat3	1-acylglycerol-3-phosphate O-acyltransferase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26638857-4	chr17	26638764	26638964	+	959.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026170, intron 8 of 9)	intron (NM_026170, intron 8 of 9)	-37532.0	NM_025272	11974.0	Mm.22602	NM_025272	ENSMUSG00000015575	Atp6v0e	Atp6k|Atp6v0e1|M9.2	ATPase, H+ transporting, lysosomal V0 subunit E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-125030003-4	chr4	125029903	125030103	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145552)	promoter-TSS (NM_145552)	-11.0	NM_145552	230737.0	Mm.90760	NM_145552	ENSMUSG00000028869	Gnl2	BC003262|HUMAUANTIG|Ngp-1	guanine nucleotide binding protein-like 2 (nucleolar)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-58978276-4	chr2	58978156	58978356	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362394, intron 9 of 13)	intron (NM_001362394, intron 9 of 13)	182427.0	NM_001362393	227933.0	Mm.330234	NM_177650	ENSMUSG00000036641	Ccdc148	5830402J09|Gm38473	coiled-coil domain containing 148	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-51200677-2	chr3	51200577	51200777	+	684.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-23770.0	NM_009834	12457.0	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-33918380-2	chr17	33918280	33918480	+	821.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_020625, exon 2 of 2)	exon (NM_020625, exon 2 of 2)	-1098.0	NM_001025313	21356.0	Mm.154457	NM_009318	ENSMUSG00000024308	Tapbp	D17Wsu91e|TPN	TAP binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-32787647-3	chr14	32787539	32787739	+	781.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163616, intron 1 of 4)	intron (NM_001163616, intron 1 of 4)	1676.0	NM_001163616	69069.0	Mm.261609	NM_001163616	ENSMUSG00000041707	1810011H11Rik	4733401I05Rik	RIKEN cDNA 1810011H11 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-105058646-2	chr3	105058546	105058746	+	917.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5500.0	NM_030249	80281.0	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-21959521-2	chr6	21959421	21959621	+	967.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001311061, intron 4 of 11)	Lx9|LINE|L1	9906.0	NM_023626	71777.0	Mm.39999	NM_023626	ENSMUSG00000029670	Ing3	1300013A07Rik|P47ING3	inhibitor of growth family, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-35296038-4	chr15	35295954	35296154	+	897.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_054049)	promoter-TSS (NM_054049)	-58.0	NM_054049	107587.0	Mm.46336	NM_054049	ENSMUSG00000022330	Osr2	5430409I15Rik|Osr2A|Osr2B	odd-skipped related 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-109362737-4	chr11	109362663	109362863	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010303)	promoter-TSS (NM_010303)	-31.0	NM_010303	14674.0	Mm.193925	NM_010303	ENSMUSG00000020611	Gna13	AU024132|AU043124|Galpha13	guanine nucleotide binding protein, alpha 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-62104718-2	chr18	62104618	62104818	+	827.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	75263.0	NM_007420	11555.0	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-99130687-3	chr9	99130562	99130762	+	857.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029094, intron 1 of 23)	MIR|SINE|MIR	9549.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-21950877-2	chr6	21950777	21950977	+	664.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001311061, intron 2 of 11)	intron (NM_001311061, intron 2 of 11)	1262.0	NM_023626	71777.0	Mm.39999	NM_023626	ENSMUSG00000029670	Ing3	1300013A07Rik|P47ING3	inhibitor of growth family, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-107879751-4	chr4	107879666	107879866	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001282737)	promoter-TSS (NM_001282737)	11.0	NM_001282737	17149.0	Mm.808	NM_001282737	ENSMUSG00000028609	Magoh	Mago-m|Mos2	mago homolog, exon junction complex core component	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-139330768-4	chr4	139330659	139330859	+	948.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20015.0	NM_025337	110198.0	Mm.482154	NM_025337	ENSMUSG00000028743	Akr7a5	0610025K21Rik|Afar|Afar1|Akr7a2	aldo-keto reductase family 7, member A5 (aflatoxin aldehyde reductase)	protein-coding	5.14202355673141	5.6342795663396	5.42417899791475	5.69008825878259	4.61986973698258	3.84351350189647	3.70411269439939	4.37401987935115	-1.54190782609385	1.321572340249e-05	0.000581524141991719
Merged-chr2-29716436-2	chr2	29716336	29716536	+	750.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039086, intron 11 of 25)	intron (NM_001039086, intron 11 of 25)	-45092.0	NM_001177392	433416.0	Mm.330112	NM_001034887	ENSMUSG00000075425	Gm13547	-	predicted gene 13547	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-36122777-6	chr8	36122664	36122864	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172911, intron 3 of 5)	intron (NM_172911, intron 3 of 5)	27936.0	NM_172911	244418.0	Mm.244971	NM_172911	ENSMUSG00000050271	Prag1	9830148H23|D8Ertd82e|NACK|Sgk223|mFLJ00269	PEAK1 related kinase activating pseudokinase 1	protein-coding	6.09551152998628	5.95653812155191	6.17873953456843	6.02476834431542	5.5192752762652	5.48317591200606	5.96368510398867	5.17640252380778	-0.562759403052351	0.025601115087193	0.213109744784557
Merged-chr6-129393412-1	chr6	129393312	129393512	+	842.0	f0_balb.idr	Intergenic	Intergenic	-3885.0	NM_001204253	56760.0	Mm.30700	NM_019985	ENSMUSG00000030159	Clec1b	1810061I13Rik|Clec-2|Clec2	C-type lectin domain family 1, member b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-66346073-2	chr9	66345973	66346173	+	795.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4377.0	NM_145617	235439.0	Mm.244179	NM_145617	ENSMUSG00000038664	Herc1	2810449H11Rik|B230218H07|D130015N03Rik|tbl	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-29785967-4	chr6	29785872	29786072	+	952.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001171000, intron 1 of 16)	L1M2|LINE|L1	17529.0	NM_001171000	74340.0	Mm.210899	NM_021414	ENSMUSG00000029772	Ahcyl2	4631427C17Rik|AI227036|Adohcyase3|mKIAA0828	S-adenosylhomocysteine hydrolase-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-106200060-6	chr1	106199971	106200171	+	821.888916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133821, intron 1 of 16)	intron (NM_133821, intron 1 of 16)	28202.0	NM_133821	98432.0	Mm.24115	NM_133821	ENSMUSG00000044340	Phlpp1	AI836256|Phlpp|Plekhe1|SCOP|mKIAA0606	PH domain and leucine rich repeat protein phosphatase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-60977872-4	chr1	60977777	60977977	+	911.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017480)	promoter-TSS (NM_017480)	-37.0	NM_017480	54167.0	Mm.42044	NM_017480	ENSMUSG00000026009	Icos	AILIM|CCLP|CRP-1|H4|Ly115	inducible T cell co-stimulator	protein-coding	-0.181996959292385	-0.157800222933845	0.235634903674935	-0.17168936056035	0.00506400605853991	1.1035666989773	-0.163860745581826	-0.170618007778815	2.47716804464637	0.264901278863836	1
Merged-chr1-165675296-4	chr1	165675203	165675403	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038846, intron 1 of 5)	intron (NM_001038846, intron 1 of 5)	32791.0	NM_001038846	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-77508270-4	chr11	77508163	77508363	+	955.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001004144)	TTS (NM_001004144)	5010.0	NM_001024920	216964.0	Mm.341211	NM_001024920	ENSMUSG00000044328	Trp53i13	2410019G02Rik|Tp53i13	transformation related protein 53 inducible protein 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-4236173-1	chr8	4236073	4236273	+	670.0	f1_c57bl6.idr	3' UTR (NM_028175, exon 3 of 3)	3' UTR (NM_028175, exon 3 of 3)	-2567.0	NM_011944	26400.0	Mm.3906	NM_011944	ENSMUSG00000002948	Map2k7	5930412N11Rik|JNKK 2|Jnkk2|MAPKK 7|MEK 7|Mapkk7|Mek7|Mkk7|Prkmk7|sek2	mitogen-activated protein kinase kinase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-124725566-2	chr2	124725466	124725666	+	837.400024	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	71985.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-86139145-2	chr10	86139045	86139245	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013722, intron 6 of 13)	intron (NM_013722, intron 6 of 13)	43291.0	NR_038024	78170.0	Mm.444790	NR_038024	ENSMUSG00000112493	4930486F22Rik	-	RIKEN cDNA 4930486F22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-89906020-3	chr16	89905923	89906123	+	710.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009384, intron 3 of 27)	B3|SINE|B2	54804.0	NM_009384	21844.0	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-84390933-3	chr10	84390841	84391041	+	953.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004363, intron 4 of 6)	intron (NM_001004363, intron 4 of 6)	49530.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-65391790-1	chr3	65391690	65391890	+	799.25	f0_balb.idr	intron (NM_026155, intron 1 of 4)	intron (NM_026155, intron 1 of 4)	763.0	NM_026155	67437.0	Mm.232728	NM_026155	ENSMUSG00000027828	Ssr3	0610038P07Rik|AL022999|AU022074|AW553833|TRAPG	signal sequence receptor, gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-25545930-2	chr19	25545830	25546030	+	693.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_015826, exon 3 of 5)	exon (NM_015826, exon 3 of 5)	40224.0	NM_015826	50796.0	Mm.391208	NM_015826	ENSMUSG00000024837	Dmrt1	-	doublesex and mab-3 related transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25788347-2	chr7	25788247	25788447	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009465, intron 1 of 19)	intron (NM_009465, intron 1 of 19)	386.0	NM_001190974	26362.0	Mm.4128	NM_009465	ENSMUSG00000002602	Axl	AI323647|Ark|Tyro7|Ufo	AXL receptor tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-114691058-4	chr5	114690986	114691186	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019821)	promoter-TSS (NM_019821)	-151.0	NM_019821	56356.0	Mm.275766	NM_019821	ENSMUSG00000011884	Gltp	1110001F24Rik|C76925|C77564	glycolipid transfer protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91411023-4	chr16	91410918	91411118	+	986.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008349, intron 2 of 6)	MTE2a|LTR|ERVL-MaLR	4783.0	NM_008349	16155.0	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-95050777-4	chr4	95050697	95050897	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010591, exon 1 of 1)	exon (NM_010591, exon 1 of 1)	1425.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-91410545-2	chr13	91410445	91410645	+	612.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TC)n|Simple_repeat|Simple_repeat	-22460.0	NR_045161	320297.0	Mm.375866	NR_045161	ENSMUSG00000097182	A830009L08Rik	-	RIKEN cDNA A830009L08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-122102756-2	chr14	122102656	122102856	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_015586, intron 2 of 3)	ORR1F|LTR|ERVL-MaLR	4218.0	NR_015586	319727.0	Mm.215552	NR_015586		A330035P11Rik	-	RIKEN cDNA A330035P11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-11014728-4	chr16	11014628	11014828	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040518, exon 3 of 3)	non-coding (NR_040518, exon 3 of 3)	5830.0	NR_040518	100043147.0	Mm.489001	NR_040518	ENSMUSG00000097056	Gm4262	-	predicted gene 4262	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-64048700-4	chr13	64048606	64048806	+	958.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40495.0	NM_008291	15487.0	Mm.5109	NM_008291	ENSMUSG00000033122	Hsd17b3	-	hydroxysteroid (17-beta) dehydrogenase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3253302-2	chr4	3253202	3253402	+	679.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MMERVK10C-int|LTR|ERVK	-67997.0	NM_001167535	100312471.0	Mm.377218	NM_001167535	ENSMUSG00000115466	Vmn1r3	Gm11778	vomeronasal 1 receptor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-135396480-3	chr1	135396411	135396611	+	603.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357578, intron 15 of 24)	intron (NM_001357578, intron 15 of 24)	-21448.0	NM_175259	77552.0	Mm.41407	NM_175259	ENSMUSG00000041889	Shisa4	9330132O05Rik|Tmem58|mShisa4	shisa family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-115052835-4	chr4	115052744	115052944	+	976.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3582.0	NM_011527	21349.0	Mm.239869	NM_011527	ENSMUSG00000028717	Tal1	Hpt|SCL/tal-1|Scl|bHLHa17|tal-1	T cell acute lymphocytic leukemia 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6041942-2	chr19	6041847	6042047	+	789.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-4629.0	NM_028769	74126.0	Mm.149870	NM_028769	ENSMUSG00000024807	Syvn1	1200010C09Rik|AW211966|C85322|D530017H19Rik|Hrd1	synovial apoptosis inhibitor 1, synoviolin	protein-coding	0.983792868784652	2.93815245396741	1.06208516143288	2.67668528188842	1.90597448117886	1.64861180000807	1.06993991420969	2.69170694040122	-0.545639621373755	0.649557182172005	0.985422869512088
Merged-chr8-72350924-3	chr8	72350836	72351036	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007944, intron 22 of 23)	intron (NM_007944, intron 22 of 23)	31874.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	-2.18375600819439	-2.15556918946382	-2.16409311609999	-2.17109492323169	-2.18177734563694	-2.01960173909294	-2.16216348594872	-2.16984160310277	0.759018020146679	0.829933115115583	1
Merged-chr15-21692322-1	chr15	21692222	21692422	+	544.0	f1_c57bl6.idr	Intergenic	Lx3A|LINE|L1	580870.0	NM_001008420	215654.0	Mm.300909	NM_001008420	ENSMUSG00000040452	Cdh12	Cdhb	cadherin 12	protein-coding	1.67805712417983	1.47949787833252	2.12140390120196	3.10346060471059	1.52899886166526	1.20674628674401	2.13938657752559	2.48216400265528	-0.767254718100881	0.461024803395589	0.920953234475195
Merged-chr7-80019344-2	chr7	80019244	80019444	+	988.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5470.0	NM_001145999	209225.0	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-34317144-2	chr10	34317044	34317244	+	596.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_176968, intron 8 of 11)	intron (NM_176968, intron 8 of 11)	19723.0	NM_030203	72480.0	Mm.21485	NM_030203	ENSMUSG00000039485	Tspyl4	2610102M01Rik|B230210I21Rik|D10Bwg0791e	TSPY-like 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-111742471-2	chr13	111742371	111742571	+	860.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56293.0	NM_172593	218613.0	Mm.31012	NM_172593	ENSMUSG00000032727	Mier3	5730509D14|AU015422|D130064H19Rik	MIER family member 3	protein-coding	0.0191381702713508	0.0401766128773876	0.649887993882126	0.0280262933651059	0.320544243259251	0.0417113971730255	0.959274066434059	0.0289564301199827	1.14349124412635	0.597578564059434	1
Merged-chr7-133033726-2	chr7	133033626	133033826	+	644.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009980, intron 2 of 10)	intron (NM_009980, intron 2 of 10)	-18479.0	NM_001170744	13017.0	Mm.246240	NM_009980	ENSMUSG00000030970	Ctbp2	AA407280|D7Ertd45e|Gtrgeo6|Ribeye	C-terminal binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-20324132-1	chr16	20324032	20324232	+	551.0	f0_balb.idr	intron (NM_183158, intron 1 of 8)	intron (NM_183158, intron 1 of 8)	1272.0	NM_183158	224044.0	Mm.276400	NM_183158	ENSMUSG00000022818	Cyp2ab1	EG224044|F730023N20	cytochrome P450, family 2, subfamily ab, polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-94485476-2	chr8	94485374	94485574	+	854.466675	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033207, intron 11 of 48)	B3A|SINE|B2	12711.0	NM_001033207	434341.0	Mm.334720	NM_001033207	ENSMUSG00000074151	Nlrc5	AI451557|AK220210|NOD27	NLR family, CARD domain containing 5	protein-coding	2.51413042362312	2.60342861379108	1.45474015383497	2.64914754105104	2.62102593381606	3.02347017548722	2.64606093205852	2.0556818011617	0.496657247172647	0.554793480948683	0.959914380895535
Merged-chr17-35994464-4	chr17	35994345	35994545	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015618)	promoter-TSS (NR_015618)	-59.0	NR_015618	77810.0	Mm.483143	NR_015618		A930015D03Rik	-	RIKEN cDNA A930015D03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-53461554-3	chr10	53461448	53461648	+	754.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51666.0	NR_152767	102640074.0	Mm.412957	NR_152767		Gm36229	-	predicted gene, 36229	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115412859-4	chr11	115412777	115412977	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001347645)	TTS (NM_001347645)	7042.0	NM_027862	71679.0	Mm.371641	NM_027862	ENSMUSG00000034566	Atp5h	0610009D10Rik	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit D	protein-coding	3.74456834237647	2.85072630406611	2.74997388926016	3.77429216520814	2.54392504554948	3.25039982450059	3.90436087708195	3.40001027553794	-0.0289387079558283	0.963279333489461	0.998431161219273
Merged-chr9-71959708-1	chr9	71959608	71959808	+	703.333313	f0_balb.idr	intron (NM_011544, intron 5 of 20)	intron (NM_011544, intron 5 of 20)	-63612.0	NM_001253863	21406.0	Mm.171615	NM_011544	ENSMUSG00000032228	Tcf12	A130037E08Rik|ALF1|HEB|HEBAlt|HTF-4|HTF4|ME1|REB|bHLHb20	transcription factor 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117332391-4	chr11	117332275	117332475	+	875.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113488)	promoter-TSS (NM_001113488)	62.0	NM_001113488	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-16046048-4	chr19	16045942	16046142	+	903.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60967.0	NR_045355	100502653.0	Mm.149980	NR_045355	ENSMUSG00000097557	C130060C02Rik	-	RIKEN cDNA C130060C02 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-13866926-4	chr10	13866781	13866981	+	905.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025446, intron 1 of 5)	intron (NM_025446, intron 1 of 5)	2076.0	NM_025446	66253.0	Mm.45755	NM_025446	ENSMUSG00000019806	Aig1	1500031O19Rik|AV064870|AW413422|CGI-103	androgen-induced 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-79346168-2	chr15	79346068	79346268	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001304830)	promoter-TSS (NM_001304830)	-453.0	NM_001304830	17133.0	Mm.86646	NM_010755	ENSMUSG00000042622	Maff	-	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein F (avian)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97296537-1	chr6	97296437	97296637	+	868.0	f1_c57bl6.idr	intron (NM_145148, intron 21 of 23)	B4A|SINE|B4	-43757.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	2.39772586499204	1.90701559474303	1.2231065234774	2.67392004098227	1.71550049707792	2.33597737152822	2.13800311504334	1.44083419560229	-0.539986027095326	0.597366180038379	0.971902489067841
Merged-chr10-81400727-2	chr10	81400627	81400827	+	946.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008688, exon 10 of 10)	3' UTR (NM_008688, exon 10 of 10)	7663.0	NM_001099917	72273.0	Mm.253147	NM_001099917	ENSMUSG00000078439	Smim24	2210404O07Rik	small integral membrane protein 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-45202549-4	chr9	45202450	45202650	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198971, intron 1 of 4)	intron (NM_001198971, intron 1 of 4)	1525.0	NM_145403	214523.0	Mm.436756	NM_145403	ENSMUSG00000032091	Tmprss4	mCAP2	transmembrane protease, serine 4	protein-coding	3.74311123890777	3.42393642672807	3.6248487680833	3.38122742881138	3.81898697256435	3.1348748953119	2.01488140768886	3.04063238775492	-0.608074213511567	0.331381927663726	0.832246797678493
Merged-chr17-24697053-1	chr17	24696953	24697153	+	576.0	f1_balb.idr	promoter-TSS (NM_023040)	promoter-TSS (NM_023040)	819.0	NM_001357836	71893.0	Mm.390971	NM_027988	ENSMUSG00000019320	Noxo1	2310034C04Rik|P41NOX|P41NOXA|P41NOXB|P41NOXC|Snx28|hslt	NADPH oxidase organizer 1	protein-coding	1.52607332731021	2.01475920833298	2.18453701329402	2.54125890881396	1.68364862819656	1.24198177782448	1.96199305870325	2.13284171756392	-0.85515143623472	0.398821437427254	0.885012968233564
Merged-chr8-71507802-4	chr8	71507691	71507891	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_032398, exon 3 of 6)	exon (NM_032398, exon 3 of 6)	3978.0	NM_032398	84094.0	Mm.260768	NM_032398	ENSMUSG00000034845	Plvap	MECA32|Pv1	plasmalemma vesicle associated protein	protein-coding	4.31700713474364	3.11029753062163	4.42171610037495	2.11192653773614	3.45556824465258	3.64111520893211	2.5946977621149	2.65843506487847	-0.932370072009442	0.174810162159588	0.64338916082288
Merged-chr8-108817904-2	chr8	108817762	108817962	+	737.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007496, intron 3 of 9)	Lx7|LINE|L1	103218.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35259436-5	chr17	35259418	35259618	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3576.0	NM_010380	14964.0	Mm.439675	NM_010380	ENSMUSG00000073411	H2-D1	H-2D|H2-D	histocompatibility 2, D region locus 1	protein-coding	0.395753484459661	0.422224497845922	0.413623506337286	0.406941424592336	0.916181808652802	1.08579669198329	1.14018722959304	0.870380192864219	4.50240662592214	0.010419396980124	1
Merged-chr19-42001801-4	chr19	42001717	42001917	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145500, intron 1 of 2)	intron (NM_145500, intron 1 of 2)	20054.0	NM_145500	226122.0	Mm.22948	NM_145500	ENSMUSG00000025171	Ubtd1	BC016129	ubiquitin domain containing 1	protein-coding	3.38727266682117	3.63033847810097	4.20923197323849	3.70865238935554	4.07206136433944	2.64134034747165	3.53663669220388	3.50995074680198	-0.321871779176417	0.558834366977675	0.960321604678676
Merged-chr11-119954445-4	chr11	119954340	119954540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037754, intron 1 of 13)	intron (NM_001037754, intron 1 of 13)	11348.0	NM_130862	108100.0	Mm.197534	NM_130862	ENSMUSG00000025372	Baiap2	IRSp53|R75030	brain-specific angiogenesis inhibitor 1-associated protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-181286149-2	chr2	181286049	181286249	+	560.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198169, intron 1 of 9)	MT2B|LTR|ERVL	1817.0	NM_198169	229004.0	Mm.220423	NM_198169	ENSMUSG00000038705	Gmeb2	AI839884	glucocorticoid modulatory element binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-23426994-3	chr13	23426856	23427056	+	882.7666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3090.0	NM_013924	30946.0	Mm.292094	NM_013924	ENSMUSG00000036376	Abt1	-	activator of basal transcription 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-77627008-2	chr15	77626908	77627108	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16278.0	NM_001143686	328563.0	Mm.17957	NM_001143686	ENSMUSG00000091694	Apol11b	A330102K04Rik	apolipoprotein L 11b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-115367006-4	chr6	115366908	115367108	+	899.662476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001308354, intron 1 of 7)	intron (NM_001308354, intron 1 of 7)	4659.0	NM_001308354	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-80025195-4	chr2	80025097	80025297	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355141, intron 2 of 15)	intron (NM_001355141, intron 2 of 15)	13705.0	NM_001355142	18573.0	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-134315398-2	chr1	134315298	134315498	+	566.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001144855, intron 17 of 28)	intron (NM_001144855, intron 17 of 28)	17530.0	NM_001144855	68507.0	Mm.295105	NM_001144855	ENSMUSG00000026458	Ppfia4	100042382|1110008G13Rik|AI448359|AI852265|C81506|Gm3812	protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-76016845-4	chr12	76016756	76016956	+	957.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005510, intron 66 of 115)	LTR55|LTR|ERVL?	107753.0	NR_039560	100628610.0		NR_039560	ENSMUSG00000092922	Mir5101	mmu-mir-5101|mu-mir-5101	microRNA 5101	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-14055794-3	chr2	14055692	14055892	+	979.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013935, exon 1 of 7)	exon (NM_013935, exon 1 of 7)	243.0	NM_001012396	30963.0	Mm.241205	NM_013935	ENSMUSG00000063275	Hacd1	Ptpla	3-hydroxyacyl-CoA dehydratase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-43327484-4	chr17	43327384	43327584	+	930.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32947.0	NM_001357332	224792.0	Mm.23478	NM_001081178	ENSMUSG00000056492	Adgrf5	8430401C09Rik|9330185D23|AI528491|Gpr116|mKIAA0758	adhesion G protein-coupled receptor F5	protein-coding	1.95434392893919	1.19912328905561	2.12216664489528	1.95533371141758	1.97069769466745	1.20414282035429	2.23943521927343	1.96547269465449	0.128090449554925	0.906406742131347	0.998431161219273
Merged-chr9-108558315-2	chr9	108558215	108558415	+	639.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_175143, intron 9 of 9)	RMER17C|LTR|ERVK	-2186.0	NM_011830	23918.0	Mm.6065	NM_011830	ENSMUSG00000062867	Impdh2	IMPD	inosine monophosphate dehydrogenase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-34407722-4	chr7	34407661	34407861	+	887.162476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18056.0	NM_025948	67070.0	Mm.276503	NM_025948	ENSMUSG00000066568	Lsm14a	2700023B17Rik|AA407828|AU017544|Tral|mRAP55A	LSM14A mRNA processing body assembly factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-145585279-3	chr4	145585210	145585410	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001324416, exon 1 of 4)	5' UTR (NM_001324416, exon 1 of 4)	110.0	NM_001324416	433801.0	Mm.276881	NM_001013808	ENSMUSG00000078502	Gm13212	-	predicted gene 13212	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-34676285-3	chr7	34676194	34676394	+	791.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175140, intron 3 of 3)	intron (NM_175140, intron 3 of 3)	-20785.0	NM_001360818	233107.0	Mm.76761	NM_146188	ENSMUSG00000030499	Kctd15	BC031749	potassium channel tetramerisation domain containing 15	protein-coding	1.5048097757298	1.02244239734082	1.25621073869918	2.69266254150237	1.35847562291044	2.26718068912541	1.00137970286564	2.29023790902925	0.0761907738662578	0.949591194580661	0.998431161219273
Merged-chr8-94441863-2	chr8	94441763	94441963	+	717.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER113|DNA|hAT-Charlie	-6760.0	NR_015514	320377.0	Mm.486022	NR_015514		9330175E14Rik	A630085K21	RIKEN cDNA 9330175E14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3843056-2	chr12	3842956	3843156	+	642.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_007872, intron 2 of 22)	PB1D11|SINE|Alu	19188.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-108041862-3	chr11	108041754	108041954	+	627.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011101, intron 5 of 16)	intron (NM_011101, intron 5 of 16)	45006.0	NR_106082	102465705.0		NR_106082	ENSMUSG00000098989	Mir7223	Gm28009|mmu-mir-7223	microRNA 7223	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119034401-4	chr11	119034315	119034515	+	969.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	6498.0	NM_013926	30951.0	Mm.99953	NM_013926	ENSMUSG00000025578	Cbx8	Pc3	chromobox 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-17278579-4	chr19	17278497	17278697	+	996.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60908.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	4.56984286049748	3.66712698884832	5.3502189902201	4.13203281952253	5.00914411233775	4.06821658051331	4.98313598693253	4.2128125602445	0.0761576333033499	0.866678158541011	0.998431161219273
Merged-chr5-21136738-4	chr5	21136647	21136847	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39532.0	NR_153366	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-63134034-2	chr9	63133934	63134134	+	773.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12946.0	NM_172446	207667.0	Mm.36349	NM_172446	ENSMUSG00000022245	Skor1	AV273001|C230094B15Rik|Corl1|Lbxcor1	SKI family transcriptional corepressor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-106362776-2	chr1	106362676	106362876	+	632.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133821, intron 10 of 16)	Lx8b|LINE|L1	183855.0	NR_106164	102466254.0		NR_106164	ENSMUSG00000098344	Mir3473f	Gm27846|mmu-mir-3473f	microRNA 3473f	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-139224944-4	chr7	139224827	139225027	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001143755, intron 6 of 8)	intron (NM_001143755, intron 6 of 8)	-11620.0	NM_001162540	57740.0	Mm.65336	NM_021302	ENSMUSG00000015981	Stk32c	PKE|Pkek|YANK3	serine/threonine kinase 32C	protein-coding	5.70908909945009	5.50200682670526	5.37432271685413	5.21622459752408	5.35492113777412	4.15304661792658	4.48621626665075	4.29229522629922	-0.927174878341746	0.00860337523158861	0.0978161740360593
Merged-chr11-80043064-4	chr11	80043028	80043228	+	772.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	37863.0	NM_001277106	54394.0	Mm.272093	NM_018776	ENSMUSG00000017561	Crlf3	BB164954|Creme9|Cytor4	cytokine receptor-like factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-20132951-3	chr3	20132872	20133072	+	967.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355261, intron 5 of 7)	intron (NM_001355261, intron 5 of 7)	22144.0	NM_001355261	27357.0	Mm.6375	NM_013755	ENSMUSG00000019528	Gyg	AU017667|GN1|Gyg1	glycogenin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127576516-4	chr10	127576409	127576609	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008512, exon 24 of 89)	exon (NM_008512, exon 24 of 89)	-41950.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135914395-4	chr5	135914298	135914498	+	960.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018871, intron 1 of 1)	intron (NM_018871, intron 1 of 1)	20243.0	NM_018871	22628.0	Mm.233813	NM_018871	ENSMUSG00000051391	Ywhag	14-3-3gamma|D7Bwg1348e	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-38660247-4	chr15	38660130	38660330	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-1674.0	NM_025494	66335.0	Mm.276618	NM_025494	ENSMUSG00000022295	Atp6v1c1	1700025B18Rik|U13839	ATPase, H+ transporting, lysosomal V1 subunit C1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89442703-2	chr3	89442603	89442803	+	636.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146131, intron 2 of 10)	intron (NM_146131, intron 2 of 10)	5999.0	NM_146131	229534.0	Mm.65906	NM_146131	ENSMUSG00000042613	Pbxip1	4732463H20Rik	pre B cell leukemia transcription factor interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-101217339-4	chr4	101217208	101217408	+	818.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146145, intron 1 of 24)	intron (NM_146145, intron 1 of 24)	47974.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-77694206-2	chr11	77694106	77694306	+	775.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001024205, intron 2 of 3)	intron (NM_001024205, intron 2 of 3)	8067.0	NM_001024205	68564.0	Mm.428996	NM_001024205	ENSMUSG00000037857	Nufip2	1110001M19Rik|9530056D24Rik|AI256692|AI461731|PIG1|mKIAA1321	nuclear fragile X mental retardation protein interacting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-36629940-2	chr16	36629840	36630040	+	925.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019388, intron 1 of 7)	intron (NM_019388, intron 1 of 7)	36137.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44691052-2	chr9	44690952	44691152	+	918.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153537, intron 20 of 21)	intron (NM_153537, intron 20 of 21)	17819.0	NM_001277847	58866.0	Mm.45380	NM_021481	ENSMUSG00000032098	Treh	2210412M19Rik	trehalase (brush-border membrane glycoprotein)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97746106-2	chr11	97746006	97746206	+	788.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_026186, exon 10 of 10)	3' UTR (NM_026186, exon 10 of 10)	1209.0	NR_106180	102466256.0		NR_106180	ENSMUSG00000098919	Mir8102	Gm27795|mmu-mir-8102	microRNA 8102	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-59183004-2	chr11	59182904	59183104	+	630.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175452)	promoter-TSS (NM_175452)	-178.0	NM_175452	118454.0	Mm.40016	NM_080454	ENSMUSG00000043448	Gjc2	B230382L12Rik|Cx47|Gja12	gap junction protein, gamma 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-90797867-3	chr17	90797761	90797961	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346957, intron 3 of 18)	intron (NM_001346957, intron 3 of 18)	-4385.0	NR_136930	102634634.0		NR_136930		Gm20491	-	enolase 1, alpha non-neuron pseudogene	pseudo	2.01918268536459	1.67470680772731	2.70317489159562	1.79060626903333	3.29142185717854	3.39192674878876	2.50145384490247	1.57814961402404	1.51860513676273	0.0852071625678018	0.448252939120938
Merged-chr18-82783105-4	chr18	82782988	82783188	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24049.0	NR_045389	76961.0	Mm.396392	NR_045389	ENSMUSG00000101773	2210420H20Rik	-	RIKEN cDNA 2210420H20 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25686307-2	chr7	25686207	25686407	+	951.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011577)	promoter-TSS (NM_011577)	-695.0	NM_011577	21803.0	Mm.248380	NM_011577	ENSMUSG00000002603	Tgfb1	TGF-beta1|TGFbeta1|Tgfb|Tgfb-1	transforming growth factor, beta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-120830479-4	chr14	120830355	120830555	+	721.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-80739.0	NM_023579	70572.0	Mm.221452	NM_023579	ENSMUSG00000030662	Ipo5	1110011C18Rik|5730478E03Rik|AA409333|C76941|IMB3|Kpnb3|Ranbp5|imp5	importin 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-20722904-2	chr2	20722804	20723004	+	753.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177630, intron 5 of 17)	intron (NM_001177630, intron 5 of 17)	203391.0	NM_001177631	208618.0	Mm.237935	NM_029895	ENSMUSG00000036617	Etl4	6620402G01Rik|9430077C05Rik|BC026657|E330027G05Rik|Etl-4|Skt	enhancer trap locus 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-85283994-4	chr13	85283910	85284110	+	980.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145452, intron 1 of 24)	(TG)n|Simple_repeat|Simple_repeat	5476.0	NM_145452	218397.0	Mm.259653	NM_145452	ENSMUSG00000021549	Rasa1	Gap|RasGAP|Rasa	RAS p21 protein activator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131470767-4	chr1	131470629	131470829	+	843.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081011, intron 2 of 22)	intron (NM_001081011, intron 2 of 22)	56632.0	NM_001081011	14270.0	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-91732199-2	chr6	91732099	91732299	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009320, intron 5 of 14)	intron (NM_009320, intron 5 of 14)	48132.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-42276616-2	chr16	42276516	42276716	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008083, intron 2 of 2)	intron (NM_008083, intron 2 of 2)	26853.0	NR_105858	102466172.0		NR_105858	ENSMUSG00000098300	Mir6540	Gm27780|mir-6540|mmu-mir-6540	microRNA 6540	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-57555855-2	chr9	57555755	57555955	+	876.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14|LTR|ERV1	-3103.0	NM_025837	110119.0	Mm.247218	NM_025837	ENSMUSG00000032306	Mpi	1110002E17Rik|AI315153|Mpi-1|Mpi1	mannose phosphate isomerase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124807797-2	chr6	124807697	124807897	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001306050)	promoter-TSS (NM_001306050)	-864.0	NM_001306051	14794.0	Mm.261906	NM_013539	ENSMUSG00000038451	Spsb2	AI461677|C9|Grcc9|SSB2	splA/ryanodine receptor domain and SOCS box containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-112976957-2	chr12	112976857	112977057	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001145900, exon 2 of 5)	exon (NM_001145900, exon 2 of 5)	394.0	NM_201646	399566.0	Mm.440140	NM_201646	ENSMUSG00000002803	Btbd6	-	BTB (POZ) domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-77443867-3	chr11	77443769	77443969	+	871.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177710, intron 13 of 14)	intron (NM_177710, intron 13 of 14)	-20044.0	NM_139129	216961.0	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128767250-2	chr2	128767150	128767350	+	942.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 8 of 18)	intron (NM_008587, intron 8 of 18)	-51053.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31158272-2	chr14	31158172	31158372	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_138672, intron 18 of 68)	RMER17C|LTR|ERVK	10369.0	NM_138672	192187.0	Mm.220821	NM_138672	ENSMUSG00000042286	Stab1	FEEL-1|FELE-1|MFEEL-1|MS-1|STAB-1|mKIAA0246	stabilin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-38284069-4	chr15	38283965	38284165	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15835.0	NM_001357677	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-17001243-1	chr16	17001143	17001343	+	596.0	f0_balb.idr	intron (NM_001038663, intron 1 of 7)	ORR1B2|LTR|ERVL-MaLR	17861.0	NM_001038663	26413.0	Mm.196581	NM_011949	ENSMUSG00000063358	Mapk1	9030612K14Rik|AA407128|AU018647|C78273|ERK|Erk2|MAPK2|PRKM2|Prkm1|p41mapk|p42mapk	mitogen-activated protein kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97452947-2	chr6	97452847	97453047	+	822.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	PB1D9|SINE|Alu	6339.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-103059155-4	chr14	103059053	103059253	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11063.0	NM_001033242	211286.0	Mm.295289	NM_001033242	ENSMUSG00000022125	Cln5	A730075N08Rik	ceroid-lipofuscinosis, neuronal 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97766571-4	chr11	97766465	97766665	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026186)	promoter-TSS (NM_026186)	48.0	NM_026186	67480.0	Mm.33206	NM_026186	ENSMUSG00000018541	Cwc25	1300013D05Rik|AA473636|Ccdc49|R75228	CWC25 spliceosome-associated protein	protein-coding	5.01205377225336	4.54889079955337	3.9321257868766	4.79000076972653	4.71097647275992	3.93002122796096	5.37266378550884	5.17776274104851	0.330991069934327	0.419835896849586	0.899498409000238
Merged-chr6-72136926-2	chr6	72136826	72137026	+	739.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_001035228, intron 3 of 6)	intron (NM_001035228, intron 3 of 6)	-13729.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-117711125-2	chr13	117711025	117711225	+	654.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045508, intron 3 of 4)	intron (NR_045508, intron 3 of 4)	8886.0	NR_045508	71100.0	Mm.414841	NR_045508	ENSMUSG00000079048	4933413L06Rik	-	RIKEN cDNA 4933413L06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-44578243-1	chr19	44578143	44578343	+	722.0	f0_balb.idr	Intergenic	MIR|SINE|MIR	15389.0	NM_176958	319594.0	Mm.145278	NM_176958	ENSMUSG00000036450	Hif1an	2310046M24Rik|A830014H24Rik|FIH|FIH1	hypoxia-inducible factor 1, alpha subunit inhibitor	protein-coding	2.04476947288577	1.5531877572915	1.31336889047875	1.87081469361822	1.67473873266839	1.56415086824622	1.08668370897622	2.47042178141758	0.247379422680997	0.825222605128245	0.998431161219273
Merged-chr1-63668984-4	chr1	63668900	63669100	+	833.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081658, intron 6 of 14)	MTD|LTR|ERVL-MaLR	17927.0	NM_001081658	241073.0	Mm.297680	NM_001081658	ENSMUSG00000069085	Dytn	Gm215	dystrotelin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4726391-4	chr16	4726286	4726486	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001136066)	promoter-TSS (NM_001136066)	25.0	NM_001136066	15369.0	Mm.272866	NM_010443	ENSMUSG00000004070	Hmox2	HO-2|HO2	heme oxygenase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-70250947-4	chr10	70250845	70251045	+	810.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025807, intron 1 of 5)	intron (NM_025807, intron 1 of 5)	5669.0	NM_025807	66859.0	Mm.19325	NM_025807	ENSMUSG00000037762	Slc16a9	1200003C15Rik|4930425B13Rik|AI552636	solute carrier family 16 (monocarboxylic acid transporters), member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-180695401-4	chr2	180695250	180695450	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291432, intron 1 of 5)	Charlie1|DNA|hAT-Charlie	-3302.0	NR_111965	23856.0	Mm.253836	NM_011805	ENSMUSG00000038914	Dido1	6720461J16Rik|D130048F08Rik|DATF-1|DIO-1|Datf1|dido	death inducer-obliterator 1	protein-coding	3.2209438051993	2.98392467654504	1.90976538092528	2.90511971182155	3.5298083961181	3.39562685116486	2.65736340135903	3.10489306575563	0.640701753003289	0.348377117060666	0.848378678037495
Merged-chr6-25894628-1	chr6	25894528	25894728	+	543.0	f1_c57bl6.idr	Intergenic	B3|SINE|B2	-36798.0	NR_040771	626904.0	Mm.126787	NR_040771	ENSMUSG00000106799	Gm20756	-	predicted gene, 20756	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71596095-4	chr8	71595984	71596184	+	947.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_025396, exon 5 of 5)	exon (NM_025396, exon 5 of 5)	-1562.0	NM_001166213	100037278.0	Mm.482159	NM_001166213	ENSMUSG00000043243	Fam129c	Bcnp1	family with sequence similarity 129, member C	protein-coding	4.83747175386098	3.02757102972619	4.79034996368408	4.7086917428281	5.04580666873274	5.09533893400444	5.09195267284258	4.77092020838912	0.592447070003936	0.144749687680775	0.594614499622435
Merged-chr8-34849048-3	chr8	34848949	34849149	+	744.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175091, intron 18 of 26)	intron (NM_175091, intron 18 of 26)	41439.0	NM_176933	319520.0	Mm.170276	NM_176933	ENSMUSG00000031530	Dusp4	2700078F24Rik|AI844617|BB104621|E130306H24Rik|MKP2	dual specificity phosphatase 4	protein-coding	1.67439852909856	1.01180623048777	1.98668899227686	0.953190805588736	1.82263735285119	1.01887863496898	3.21423252707523	2.1679809069133	1.97798714353908	0.0934873204466873	0.473807746009302
Merged-chr16-31209980-4	chr16	31209831	31210031	+	886.622192	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8693.0	NM_030138	78618.0	Mm.274646	NM_030138	ENSMUSG00000049076	Acap2	4832442G16|9530039J15Rik|CNT-B2|Centb2|mKIAA0041	ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-50956188-3	chr14	50956077	50956277	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001123371)	promoter-TSS (NM_001123371)	36.0	NM_001123371	667034.0	Mm.482171	NM_001123371	ENSMUSG00000068417	Pnp2	-	purine-nucleoside phosphorylase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-50383666-2	chr6	50383566	50383766	+	640.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027881)	promoter-TSS (NM_027881)	-829.0	NM_027881	71720.0	Mm.44153	NM_027881	ENSMUSG00000029822	Osbpl3	1200014M06Rik|6720421I08Rik|A530055M08|ORP-3|ORP3|OSBP3	oxysterol binding protein-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118221742-2	chr11	118221642	118221842	+	918.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	-9000.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-17764277-3	chr12	17764252	17764452	+	969.761902	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016677, intron 1 of 3)	intron (NM_016677, intron 1 of 3)	73543.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	0.622746466793224	-0.0624883954185045	0.378502925781287	0.0897426723031277	-0.0766651279813768	0.131768540244981	-0.0663545005228089	-0.0706024220952634	-2.98743223526118	0.168427024768147	1
Merged-chr17-87247070-4	chr17	87246975	87247175	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18872.0	NM_176808	193813.0	Mm.30251	NM_139295	ENSMUSG00000024150	Mcfd2	1810021C21Rik|F5f8d|Lman1ip|Sdnsf	multiple coagulation factor deficiency 2	protein-coding	5.98421628318502	6.29711531023675	5.92796024075572	5.99290775088193	5.70699157846638	6.01654031493728	6.29360422888681	6.09050320716187	-0.0182427672800507	0.937571270989973	0.998431161219273
Merged-chr4-58723051-3	chr4	58722978	58723178	+	827.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	62642.0	NM_146920	258922.0	Mm.223327	NM_146920	ENSMUSG00000043385	Olfr267	MOR262-1	olfactory receptor 267	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-179978052-3	chr2	179977912	179978112	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033782, exon 2 of 2)	non-coding (NR_033782, exon 2 of 2)	1159.0	NR_033782	66730.0	Mm.31773	NR_033782	ENSMUSG00000085704	4921531C22Rik	-	RIKEN cDNA 4921531C22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-44058914-4	chr16	44058802	44059002	+	837.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16894.0	NM_001359085	207798.0	Mm.19316	NM_153528	ENSMUSG00000036292	Gramd1c	4921521N14Rik	GRAM domain containing 1C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-34399908-2	chr6	34399808	34400008	+	567.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12454.0	NM_009731	11997.0	Mm.482073	NM_009731	ENSMUSG00000052131	Akr1b7	AR|Avdp|MVDP	aldo-keto reductase family 1, member B7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55576290-2	chr14	55576190	55576390	+	585.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026808, intron 1 of 1)	intron (NM_026808, intron 1 of 1)	616.0	NM_026808	68680.0	Mm.36758	NM_026808	ENSMUSG00000022215	Fitm1	1110028A07Rik|AV010547|Cg10671|Fit1	fat storage-inducing transmembrane protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128090760-4	chr10	128090655	128090855	+	988.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_016774)	TTS (NM_016774)	-2028.0	NM_054078	116848.0	Mm.252213	NM_054078	ENSMUSG00000040054	Baz2a	AA415431|C030005G16Rik|C78388|Tip5|Walp3|mKIAA0314	bromodomain adjacent to zinc finger domain, 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-76923316-2	chr12	76923216	76923416	+	996.8333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38932.0	NM_008558	17187.0	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-34237486-2	chr13	34237386	34237586	+	569.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033167, intron 3 of 10)	intron (NM_001033167, intron 3 of 10)	74522.0	NM_001110515	69666.0	Mm.24788	NM_001101430	ENSMUSG00000071451	Psmg4	PAC-4|mPAC4	proteasome (prosome, macropain) assembly chaperone 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-53763762-4	chr11	53763645	53763845	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_106131)	promoter-TSS (NR_106131)	-91.0	NR_106131	102465772.0		NR_106131	ENSMUSG00000099153	Mir7671	Gm27802|mmu-mir-7671	microRNA 7671	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-122574423-2	chr10	122574410	122574610	+	865.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4619.0	NR_040616	319272.0	Mm.411763	NR_040616	ENSMUSG00000112095	A130077B15Rik	-	RIKEN cDNA A130077B15 gene	ncRNA	2.12454621934096	2.28821175735548	1.19621712024005	1.90547670959751	1.94007605754486	2.60626937010402	2.22564946327845	1.17794213264544	0.372273868019234	0.728464634388519	0.998431161219273
Merged-chr15-77626655-4	chr15	77626564	77626764	+	983.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16622.0	NM_001143686	328563.0	Mm.17957	NM_001143686	ENSMUSG00000091694	Apol11b	A330102K04Rik	apolipoprotein L 11b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-154981923-3	chr4	154981824	154982024	+	897.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001305804)	TTS (NM_001305804)	17801.0	NR_131230	269614.0	Mm.30042	NM_172990	ENSMUSG00000029056	Pank4	D030031I12Rik|R75150	pantothenate kinase 4	protein-coding	1.24828062135146	0.468868506327267	0.795574164052602	0.76748905483402	0.941882940068024	0.83943453596817	0.462618218266881	0.455718272086654	-0.867429352792326	0.60661386257123	1
Merged-chr17-34124376-3	chr17	34124285	34124485	+	920.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010386, intron 1 of 5)	(T)n|Simple_repeat|Simple_repeat	-1133.0	NM_001360530	14998.0	Mm.16373	NM_010386	ENSMUSG00000037649	H2-DMa	H-2Ma|H2-Ma	histocompatibility 2, class II, locus DMa	protein-coding	3.502680130624	2.77145918794086	1.46493752087278	2.58821477051904	2.46503788251672	1.78197411543567	1.18456775467532	1.14761290235302	-2.10319516762462	0.0411415612833917	0.289228390006719
Merged-chr7-110999640-4	chr7	110999557	110999757	+	945.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17196.0	NM_194464	17540.0	Mm.250023	NM_010826	ENSMUSG00000005611	Mrvi1	BB115629|Irag|Ris1	MRV integration site 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167375331-4	chr2	167375235	167375435	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26157.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-60543484-2	chr19	60543384	60543584	+	842.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001172097, intron 4 of 6)	B2_Mm2|SINE|B2	37539.0	NM_001172097	78832.0	Mm.259026	NM_030197	ENSMUSG00000033417	Cacul1	2700078E11Rik|2810417M16Rik|9830127L17Rik|AI450346|D130033C15Rik	CDK2 associated, cullin domain 1	protein-coding	0.963612190559382	0.357200573103712	1.22759877336256	0.33148298349992	0.314921336766953	1.88533612540132	0.346056139874833	0.333489658053353	0.673905428793655	0.836076487471477	0.998431161219273
Merged-chr9-21598355-2	chr9	21598255	21598455	+	640.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-5524.0	NM_138303	74766.0	Mm.475712	NM_138303	ENSMUSG00000032182	Yipf2	1300010K09Rik	Yip1 domain family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-32473204-3	chr18	32473082	32473282	+	864.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	86852.0	NM_001048207	71683.0	Mm.292145	NM_027863	ENSMUSG00000090523	Gypc	0610037F22Rik|Cd236r	glycophorin C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-30530959-2	chr13	30530859	30531059	+	640.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14357.0	NM_025710	66694.0	Mm.181933	NM_025710	ENSMUSG00000038462	Uqcrfs1	4430402G14Rik|AI875505	ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171660603-4	chr1	171660506	171660706	+	992.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER77B|LTR|ERVL	-7569.0	NM_144539	75345.0	Mm.164642	NM_144539	ENSMUSG00000038179	Slamf7	19A|19A24|4930560D03Rik|CRACC|CS1	SLAM family member 7	protein-coding	4.25661708665762	3.74749107899718	2.80986424447988	3.36872345379794	3.84527488147881	3.52102776417577	2.833335792595	3.29915555973796	-0.348122562338021	0.552440374891027	0.959523840754686
Merged-chr4-45795292-4	chr4	45795188	45795388	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3734.0	NM_028270	72535.0	Mm.331583	NM_028270	ENSMUSG00000035561	Aldh1b1	2700007F14Rik	aldehyde dehydrogenase 1 family, member B1	protein-coding	1.65062659750656	1.67315564435734	1.42053247464328	1.73779509218607	1.79549134305212	2.8039980184593	1.80172002107245	2.22436000101942	1.66745576055551	0.0894797771012132	0.461952825155059
Merged-chr19-38823465-1	chr19	38823365	38823565	+	584.0	f1_balb.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	-4228.0	NM_021315	57753.0	Mm.86482	NM_021315	ENSMUSG00000024999	Noc3l	AF233884|Fad24	NOC3 like DNA replication regulator	protein-coding	-0.5528698427161	-0.540809019876845	-0.544757843082719	-0.111459692063228	-0.552116326665756	-0.539919237332672	0.152611539430496	-0.547273512141343	0.908527668084054	0.745607568227467	1
Merged-chr4-36040317-2	chr4	36040217	36040417	+	673.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166000, intron 7 of 8)	intron (NM_001166000, intron 7 of 8)	-195113.0	NM_175516	242384.0	Mm.132507	NM_175516	ENSMUSG00000045083	Lingo2	B230217C06Rik|Lern3|Lrrn6c	leucine rich repeat and Ig domain containing 2	protein-coding	-0.65139320450866	-0.144896148602184	-0.644187200763269	-0.111671501664741	-0.65072494666556	-0.639876868019263	-0.643411816127646	-0.646424672615495	-3.30364862812518	0.242276694930043	1
Merged-chr17-86710538-2	chr17	86710438	86710638	+	649.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43326.0	NM_010137	13819.0	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-47023462-2	chr10	47023362	47023562	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER3D-int|LTR|ERVK	778713.0	NR_028276	108637.0		NR_028276	ENSMUSG00000096263	Snord14c	Gm23107|Rnu14|U14	small nucleolar RNA, C/D box 14C	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-30779771-1	chr1	30779671	30779871	+	675.0	f0_balb.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	83485.0	NM_001081080	213109.0	Mm.194486	NM_025871	ENSMUSG00000048874	Phf3	2310061N19Rik	PHD finger protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-35055334-1	chr12	35055234	35055434	+	578.0	f0_balb.idr	intron (NM_001014973, intron 1 of 25)	intron (NM_001014973, intron 1 of 25)	8145.0	NM_001014973	217463.0	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	-0.692780954722267	-0.682571649727123	-0.231978611452394	-0.688503844062369	-0.692145352948513	-0.681815506371357	-0.685183998367064	-0.150811843788741	0.314202110059176	0.914798464608844	1
Merged-chr4-59214910-4	chr4	59214804	59215004	+	998.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011673, intron 5 of 8)	intron (NM_011673, intron 5 of 8)	25354.0	NM_011673	22234.0	Mm.198803	NM_011673	ENSMUSG00000028381	Ugcg	AU043821|C80537|Epcs21|GlcT-1|Ugcgl	UDP-glucose ceramide glucosyltransferase	protein-coding	1.09668042629214	1.37646859903217	0.899573314164248	0.697330979720775	1.1065222229693	1.38875787140488	1.3334287597101	0.69883096912167	0.51563179285056	0.719406974595169	0.998431161219273
Merged-chr10-128455481-4	chr10	128455380	128455580	+	962.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3200.0	NR_106183	102465894.0		NR_106183	ENSMUSG00000098957	Mir8105	Gm27346|mmu-mir-8105	microRNA 8105	ncRNA	3.49202858256852	2.87742395989376	2.23240676838831	2.6910023204673	1.38409851432345	1.80354117240088	1.22498068332207	1.45712962128748	-3.61819720081531	0.000374273355959791	0.00881648898849261
Merged-chr10-42273877-4	chr10	42273735	42273935	+	993.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019740, intron 2 of 3)	intron (NM_019740, intron 2 of 3)	2907.0	NM_019740	56484.0	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-25394782-4	chr14	25394680	25394880	+	932.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64405.0	NM_001310666	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-73353630-4	chr8	73353536	73353736	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010687)	promoter-TSS (NM_010687)	-96.0	NM_010687	16795.0	Mm.324371	NM_010687	ENSMUSG00000004383	Large1	BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd	LARGE xylosyl- and glucuronyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25220000-4	chr7	25219901	25220101	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207677)	promoter-TSS (NM_207677)	-142.0	NM_207677	67379.0	Mm.280594	NM_026117	ENSMUSG00000054499	Dedd2	2410050E11Rik|FLAME-3	death effector domain-containing DNA binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107739947-2	chr9	107739847	107740047	+	599.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_148930)	TTS (NM_148930)	-29472.0	NM_011349	20350.0	Mm.12903	NM_011349	ENSMUSG00000034684	Sema3f	Sema4|Semak	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-106153148-4	chr8	106153048	106153248	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357319, intron 1 of 5)	intron (NM_001357319, intron 1 of 5)	2794.0	NM_001357319	192654.0	Mm.284770	NM_133792	ENSMUSG00000031903	Pla2g15	ACS|C87498|LLPL|Lpla2|Lypla3	phospholipase A2, group XV	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-43474208-5	chr4	43474099	43474299	+	863.863342	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9510.0	NM_019436	54390.0	Mm.31775	NM_019436	ENSMUSG00000028460	Sit1	Sit	suppression inducing transmembrane adaptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-57930771-4	chr4	57930664	57930864	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-14500.0	NM_178727	242484.0	Mm.23214	NM_178727	ENSMUSG00000052117	D630039A03Rik	-	RIKEN cDNA D630039A03 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-39574492-2	chr6	39574392	39574592	+	936.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_178873, exon 1 of 8)	exon (NM_178873, exon 1 of 8)	616.0	NM_178873	57869.0	Mm.247957	NM_178873	ENSMUSG00000046947	Adck2	AA408112|BB006057	aarF domain containing kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-102531206-3	chr2	102531123	102531323	+	734.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TCC)n|Simple_repeat|Simple_repeat	-18798.0	NM_173749	210622.0	Mm.28649	NM_173749	ENSMUSG00000027188	Pamr1	5930437L24|E430002G05Rik|Ramp	peptidase domain containing associated with muscle regeneration 1	protein-coding	2.98348684460302	3.7274091948129	2.92977745881773	3.39869448534249	1.43606281058985	1.32817894110892	2.04224952273612	1.23173044261011	-3.95194529622396	4.00777815043327e-05	0.00145713097723934
Merged-chr5-101864159-4	chr5	101864062	101864262	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 50 of 66)	intron (NM_172882, intron 50 of 66)	99032.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135367787-2	chr5	135367687	135367887	+	880.75	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001346745)	TTS (NM_001346745)	-2166.0	NM_001359617	100609.0	Mm.281189	NM_145414	ENSMUSG00000000916	Nsun5	9830109N13Rik|AI326939|Nol1r|Wbscr20|Wbscr20a	NOL1/NOP2/Sun domain family, member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-45010201-2	chr4	45010101	45010301	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173399, intron 1 of 1)	intron (NM_173399, intron 1 of 1)	2211.0	NM_001163284	230119.0	Mm.44222	NM_173399	ENSMUSG00000049657	Zbtb5	5930421I10|9430083K24Rik|AI646847|mKIAA0354	zinc finger and BTB domain containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-25519917-2	chr9	25519817	25520017	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 2 of 7)	intron (NM_026189, intron 2 of 7)	38320.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-8635785-4	chr12	8635706	8635906	+	866.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36740.0	NM_177802	328059.0	Mm.46326	NM_177802	ENSMUSG00000020600	Slc7a15	Arpat	solute carrier family 7 (cationic amino acid transporter, y+ system), member 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-61807271-2	chr2	61807171	61807371	+	816.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_009322, intron 3 of 5)	intron (NM_009322, intron 3 of 5)	2818.0	NM_009322	21375.0	Mm.308525	NM_009322	ENSMUSG00000035033	Tbr1	-	T-box brain gene 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116886042-2	chr11	116885942	116886142	+	577.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32042.0	NM_001361586	69900.0	Mm.348004	NM_178620	ENSMUSG00000020818	Mfsd11	2600014M03Rik	major facilitator superfamily domain containing 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-108717972-2	chr6	108717872	108718072	+	867.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57038.0	NR_104577	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-50688326-3	chr16	50688228	50688428	+	809.422241	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38804.0	NR_105782	102466634.0		NR_105782	ENSMUSG00000098482	Mir6363	Gm28026|mmu-mir-6363	microRNA 6363	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-16552241-2	chr1	16552141	16552341	+	606.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271016, intron 5 of 6)	intron (NM_001271016, intron 5 of 6)	-32939.0	NM_001347045	29819.0	Mm.216257	NM_025303	ENSMUSG00000025920	Stau2	-	staufen double-stranded RNA binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-84932494-2	chr18	84932394	84932594	+	547.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-2511.0	NM_015798	50764.0	Mm.28369	NM_015798	ENSMUSG00000034391	Fbxo15	AU019763|Fbx15|ecat3	F-box protein 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-7099093-1	chr1	7098993	7099193	+	545.0	f0_c57.idr	intron (NM_183028, intron 1 of 5)	intron (NM_183028, intron 1 of 5)	10173.0	NM_183028	319263.0	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-10436457-4	chr16	10436363	10436563	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013778, intron 1 of 6)	intron (NM_001013778, intron 1 of 6)	10899.0	NM_001359069	383103.0	Mm.325732	NM_001013778	ENSMUSG00000050908	Tvp23a	Fam18a	trans-golgi network vesicle protein 23A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-31031945-4	chr7	31031851	31032051	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001111073)	TTS (NM_001111073)	8366.0	NR_106017	102465635.0		NR_106017	ENSMUSG00000098783	Mir7050	Gm27578|mmu-mir-7050	microRNA 7050	ncRNA	7.2893005724646	7.49987117956553	7.47192199052515	7.35873247623984	6.85508329620137	6.62302238237279	7.12061800846661	7.26592233167851	-0.435305782918475	0.011658920963767	0.121216407039235
Merged-chr11-115512898-4	chr11	115512793	115512993	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008258, intron 1 of 4)	intron (NM_008258, intron 1 of 4)	1500.0	NM_008258	15374.0	Mm.1775	NM_008258	ENSMUSG00000020737	Jpt1	Hn1	Jupiter microtubule associated homolog 1	protein-coding	1.26627337222505	0.684888970616548	1.03001588668945	0.665711463750023	1.27900472867605	1.22753443215191	0.676496804936875	1.45278630169415	1.12664215309231	0.460324171710363	0.920832323771703
Merged-chr15-86154151-1	chr15	86154051	86154251	+	779.0	f1_balb.idr	intron (NM_145475, intron 6 of 12)	MTEb|LTR|ERVL-MaLR	-31577.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	-0.575280590706129	-0.726110409532156	-0.730400031067427	-0.733730667569208	-0.738469214641644	-0.725147671992243	0.218008085593168	-0.733147475782637	2.66064494815513	0.342302452116782	1
Merged-chr16-91534680-4	chr16	91534581	91534781	+	661.974976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7137.0	NR_105786	102465190.0		NR_105786	ENSMUSG00000099308	Mir6367	Gm27467|mmu-mir-6367	microRNA 6367	ncRNA	-0.0214304026010044	-0.446357914366526	-0.449667075067539	-0.172334871402808	-0.103868002625246	-0.445609067687236	-0.448939031894711	-0.451763139748297	-1.01215616986498	0.699321964777757	1
Merged-chr15-25532268-3	chr15	25532170	25532370	+	945.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M3|LINE|L1	-90280.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-94739956-3	chr8	94739844	94740044	+	616.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5740.0	NM_009137	20299.0	Mm.12895	NM_009137	ENSMUSG00000031779	Ccl22	ABCD-1|DCBCK|MDC|Scya22	chemokine (C-C motif) ligand 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-66101186-4	chr2	66101078	66101278	+	884.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015736, intron 3 of 10)	intron (NM_015736, intron 3 of 10)	23615.0	NM_015736	14425.0	Mm.439760	NM_015736	ENSMUSG00000026994	Galnt3	-	polypeptide N-acetylgalactosaminyltransferase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-177488912-2	chr1	177488812	177489012	+	599.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43091.0	NM_013915	30928.0	Mm.330700	NM_013915	ENSMUSG00000063659	Zbtb18	RP58|Zfp238|Znf238.|zfp-238	zinc finger and BTB domain containing 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-144941665-4	chr7	144941562	144941762	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1737.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	2.71944841920327	3.06520548851612	2.5552671325697	3.77761281431205	2.62927214445487	2.96368409931834	3.90684525559662	3.62544568938885	0.412775428297814	0.530265787238553	0.950119915711771
Merged-chr5-45497216-2	chr5	45497070	45497270	+	885.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_024434, intron 3 of 12)	intron (NM_024434, intron 3 of 12)	3796.0	NM_024434	66988.0	Mm.286830	NM_024434	ENSMUSG00000039682	Lap3	2410015L10Rik|AA410100|LAP-3|Lap|Lapep|Pep-7|Pep-S|Pep7|Peps	leucine aminopeptidase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120894180-3	chr11	120894080	120894280	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027745, intron 10 of 18)	RSINE1|SINE|B4	38692.0	NM_027745	71276.0	Mm.275751	NM_027745	ENSMUSG00000048445	Ccdc57	4933434G05Rik	coiled-coil domain containing 57	protein-coding	1.19263833074012	2.26766517301482	2.05489773288104	1.48039898850273	2.75801766952199	2.71763042793935	2.07142151339642	2.13618705168295	1.57143188420801	0.104144547047167	0.502944931030958
Merged-chr11-3649828-2	chr11	3649728	3649928	+	842.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001159288, exon 1 of 27)	5' UTR (NM_001159288, exon 1 of 27)	334.0	NM_001159288	74522.0	Mm.139127	NM_198162	ENSMUSG00000034543	Morc2a	8430403M08Rik|Zcwcc1	microrchidia 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-54681643-4	chr6	54681562	54681762	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289740)	promoter-TSS (NM_001289740)	38.0	NM_001289740	68235.0	Mm.233860	NM_026629	ENSMUSG00000038065	Mturn	2410066E13Rik|AI448550|B230212L03Rik	maturin, neural progenitor differentiation regulator homolog (Xenopus)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-33909197-3	chr2	33909096	33909296	+	902.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-21250.0	NM_175184	72543.0	Mm.254914	NM_175184	ENSMUSG00000038740	Mvb12b	2610200O14Rik|2610528K11Rik|AI414895|Fam125b	multivesicular body subunit 12B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85638607-2	chr12	85638507	85638707	+	871.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205053, intron 3 of 3)	intron (NM_001205053, intron 3 of 3)	38589.0	NM_001205053	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-121544941-3	chr3	121544873	121545073	+	772.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12629.0	NM_145394	213603.0	Mm.33062	NM_145394	ENSMUSG00000039865	Slc44a3	BC010552	solute carrier family 44, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-52679641-2	chr18	52679541	52679741	+	856.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14038.0	NM_010293	14625.0	Mm.32242	NM_010293	ENSMUSG00000053624	Gykl1	AI449806|Gk-rs1	glycerol kinase-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-113724660-3	chr5	113724563	113724763	+	853.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033216, exon 1 of 3)	non-coding (NR_033216, exon 1 of 3)	109.0	NR_033216	381707.0	Mm.159016	NR_033216	ENSMUSG00000042184	1700069L16Rik	1700096P12Rik	RIKEN cDNA 1700069L16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-31085092-3	chr6	31084988	31085188	+	959.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21995.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128392578-4	chr2	128392487	128392687	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028591, intron 1 of 1)	intron (NR_028591, intron 1 of 1)	36764.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125232569-2	chr6	125232469	125232669	+	724.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145391)	promoter-TSS (NM_145391)	-709.0	NM_145391	213233.0	Mm.296902	NM_145391	ENSMUSG00000038213	Tapbpl	BC017613|TAPBPL-R|Tapbplr	TAP binding protein-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-71855353-4	chr11	71855272	71855472	+	999.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	84750.0	NR_045942	73816.0	Mm.390391	NR_045942	ENSMUSG00000085528	4930401O10Rik	-	RIKEN cDNA 4930401O10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91537763-4	chr2	91537658	91537858	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001165989, intron 1 of 43)	intron (NM_001165989, intron 1 of 43)	-8564.0	NM_029437	75786.0	Mm.168478	NM_029437	ENSMUSG00000040549	Ckap5	3110043H24Rik|4930432B04Rik|D730027C18Rik|T25636|mKIAA0097	cytoskeleton associated protein 5	protein-coding	2.68792859908435	3.02531134314399	2.1615515112578	3.36558589670137	3.22340162431344	3.8648898409859	2.82560365281282	3.30902333799121	0.796694883612221	0.224044347627649	0.715557573197225
Merged-chr5-62766356-4	chr5	62766274	62766474	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178407)	promoter-TSS (NM_178407)	-197.0	NM_178407	212285.0	Mm.244403	NM_178407	ENSMUSG00000037999	Arap2	Centd1|Gm148|mKIAA0580	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10692537-5	chr19	10692472	10692672	+	685.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361958, intron 1 of 4)	intron (NM_001361958, intron 1 of 4)	3837.0	NM_001361959	107305.0	Mm.19091	NM_181403	ENSMUSG00000048832	Vps37c	5730409F24Rik|AU042646	vacuolar protein sorting 37C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-87200321-4	chr12	87200222	87200422	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290288)	promoter-TSS (NM_001290288)	-93.0	NM_001033475	382620.0	Mm.374912	NM_001033475	ENSMUSG00000034111	Tmed8	6430595O10Rik|AI447224|Gm1184|Mem1	transmembrane p24 trafficking protein 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-70987001-4	chr17	70986894	70987094	+	687.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023402, intron 1 of 3)	intron (NM_023402, intron 1 of 3)	3522.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-25428734-3	chr15	25428638	25428838	+	631.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027376, intron 1 of 1)	intron (NR_027376, intron 1 of 1)	14546.0	NR_027376	432939.0	Mm.146555	NM_001013791		Gm5468	100040583|EG432939	predicted gene 5468	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-98996219-4	chr8	98996195	98996395	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15592.0	NR_110579	100873092.0	Mm.414599	NR_110579	ENSMUSG00000089819	Gm15679	-	predicted gene 15679	ncRNA	1.06121340366994	1.71446720445733	2.32109155729879	0.885340473542863	1.24173093369086	1.98124538079687	0.90655490966555	1.60529788061008	-0.417249770487722	0.743804240218161	0.998431161219273
Merged-chr16-87433627-2	chr16	87433527	87433727	+	711.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_016924, exon 5 of 5)	3' UTR (NM_016924, exon 5 of 5)	-1021.0	NM_001081068	78913.0	Mm.249005	NM_001081068	ENSMUSG00000052299	Ltn1	4930528H02Rik|AV266914|C87237|Listerin|Rnf160|Zfp294	listerin E3 ubiquitin protein ligase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-84891870-3	chr15	84891781	84891981	+	691.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	-31547.0	NM_016714	18141.0	Mm.28379	NM_016714	ENSMUSG00000016619	Nup50	1700030K07Rik|AI413123|Npap60	nucleoporin 50	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-95692186-1	chr12	95692086	95692286	+	564.0	f0_balb.idr	promoter-TSS (NM_201518)	promoter-TSS (NM_201518)	-40.0	NM_201518	399558.0	Mm.341948	NM_201518	ENSMUSG00000047414	Flrt2	-	fibronectin leucine rich transmembrane protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-20112977-4	chr11	20112865	20113065	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146243)	promoter-TSS (NM_146243)	-14.0	NM_146243	66713.0	Mm.259045	NM_146243	ENSMUSG00000020152	Actr2	4921510D23Rik|AA409782|Arp2|D6Ertd746e	ARP2 actin-related protein 2	protein-coding	6.61080495270327	6.91543441985377	7.32133068581449	6.80297395918105	6.52997899914122	6.8323290513245	6.79463300383021	6.79481518752641	-0.205246796680433	0.296289220153033	0.799088430255377
Merged-chr19-11107965-4	chr19	11107857	11108057	+	948.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027058, intron 4 of 6)	intron (NM_027058, intron 4 of 6)	22921.0	NM_027058	69369.0	Mm.391200	NM_027058	ENSMUSG00000024729	1700017D01Rik	-	RIKEN cDNA 1700017D01 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19149407-4	chr7	19149311	19149511	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026111)	promoter-TSS (NM_026111)	-215.0	NM_026111	67369.0	Mm.234876	NM_026111	ENSMUSG00000030407	Qpctl	1810019P04Rik|BB101812|gQC	glutaminyl-peptide cyclotransferase-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-95233400-2	chr10	95233300	95233500	+	794.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001330138, intron 2 of 2)	intron (NM_001330138, intron 2 of 2)	-87575.0	NR_131146	628062.0		NR_131146	ENSMUSG00000112481	Gm29684	-	predicted gene, 29684	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-86185077-5	chr15	86185001	86185201	+	992.8666380000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_155352)	promoter-TSS (NR_155352)	-627.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-33952227-4	chr13	33952114	33952314	+	852.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040707, intron 1 of 4)	intron (NR_040707, intron 1 of 4)	-12445.0	NM_001163239	18105.0	Mm.264036	NM_020282	ENSMUSG00000046949	Nqo2	NMO2|Nmor2|Ox2	N-ribosyldihydronicotinamide quinone reductase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-57536410-3	chr6	57536387	57536587	+	895.2777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-1061.0	NM_175523	243382.0	Mm.396893	NM_175523	ENSMUSG00000037826	Ppm1k	2900063A19Rik|A930026L03Rik|PP2Cm	protein phosphatase 1K (PP2C domain containing)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-121508535-4	chr1	121508429	121508629	+	926.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19936.0	NM_010483	15564.0	Mm.4833	NM_010483	ENSMUSG00000050534	Htr5b	5-Ht5b	5-hydroxytryptamine (serotonin) receptor 5B	protein-coding	4.4294118998056	3.39140938083973	4.56730486660327	4.77060004194488	2.64592615171652	3.16603112921735	3.84122446676352	3.56800168543767	-1.41250521547858	0.00707308173791029	0.0855546223792597
Merged-chr4-132167644-4	chr4	132167548	132167748	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23162.0	NM_013622	18386.0	Mm.5243	NM_013622	ENSMUSG00000050511	Oprd1	DOR|DOR-1|Nbor|mDOR	opioid receptor, delta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35188436-4	chr17	35188305	35188505	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010734)	promoter-TSS (NM_010734)	35.0	NM_010734	16988.0	Mm.19379	NM_010734	ENSMUSG00000073412	Lst1	B144	leukocyte specific transcript 1	protein-coding	4.87816231822495	4.64569109638883	4.74528201473792	5.00945795662402	4.88245293871287	4.4368819679498	5.10090175730879	5.57602607960792	0.284049285450519	0.415284047710606	0.896676881011847
Merged-chr13-54688771-2	chr13	54688671	54688871	+	827.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146025)	promoter-TSS (NM_001146025)	-571.0	NM_001146027	105239.0	Mm.25366	NM_134064	ENSMUSG00000034928	Rnf44	AI854545|mKIAA1100	ring finger protein 44	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-88099151-4	chr11	88099041	88099241	+	843.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198013)	promoter-TSS (NM_198013)	-5.0	NM_198013	103841.0	Mm.374846	NM_198013	ENSMUSG00000018378	Cuedc1	AI841487|C330016O16Rik	CUE domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-88483561-4	chr16	88483466	88483666	+	785.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3_Mus|LINE|L1	23412.0	NM_181490	239931.0	Mm.126860	NM_181490	ENSMUSG00000055811	Cldn17	-	claudin 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-93498507-3	chr13	93498416	93498616	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_021310, exon 1 of 11)	exon (NM_021310, exon 1 of 11)	1292.0	NM_021310	57748.0	Mm.100273	NM_021310	ENSMUSG00000021690	Jmy	-	junction-mediating and regulatory protein	protein-coding	2.95471134210716	2.00102209894383	1.07740236229614	1.31342565383562	2.72339587602335	1.11787347832937	2.42782674513443	1.32043044096612	0.0184033396180002	0.987415350143996	0.998431161219273
Merged-chr1-155465626-2	chr1	155465526	155465726	+	646.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48182.0	NM_011273	19775.0	Mm.266215	NM_011273	ENSMUSG00000026469	Xpr1	Rmc-1|Rmc1|Sxv|Syg1|XR	xenotropic and polytropic retrovirus receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30952835-2	chr7	30952735	30952935	+	887.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_011680, intron 7 of 9)	intron (NM_011680, intron 7 of 9)	3968.0	NM_011680	22282.0	Mm.322453	NM_011680	ENSMUSG00000058239	Usf2	Usf-2|bHLHb12	upstream transcription factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-102300121-1	chr11	102300021	102300221	+	541.0	f1_c57bl6.idr	Intergenic	B3|SINE|B2	-3492.0	NM_001098837	217218.0	Mm.390381	NM_001098836	ENSMUSG00000059995	Atxn7l3	E030022H21Rik	ataxin 7-like 3	protein-coding	-0.226235296896101	0.595109062818019	-0.213198233288771	-0.218068504042706	-0.225013795898844	0.608384863201147	-0.211812549537951	-0.217215065379025	0.0395006580732415	0.987233647591244	1
Merged-chr1-191288938-4	chr1	191288830	191289030	+	984.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29188.0	NM_025424	66208.0	Mm.46444	NM_025424	ENSMUSG00000037499	Nenf	1110060M21Rik|SCIRP10|Spuf	neuron derived neurotrophic factor	protein-coding	-0.752703249331578	-1.19327662759868	-1.20367200772054	-1.21221108246634	-1.07350664517746	-1.1910239053609	-1.2013187215212	-1.21068259216948	-1.39419391438984	0.678133685438574	1
Merged-chr11-26445702-2	chr11	26445602	26445802	+	692.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_102382, intron 7 of 11)	RLTR16C_MM|LTR|ERVK	58618.0	NR_102382	67030.0	Mm.18875	NM_025923	ENSMUSG00000004018	Fancl	2010322C19Rik|AW554273|B230118H11Rik|Phf9|Pog|gcd	Fanconi anemia, complementation group L	protein-coding	1.81226367054721	2.6647373521587	2.89642074987673	1.73884259873742	1.48186099137961	2.3455554159894	2.13116468536734	2.41673574070799	-0.550274991997591	0.549028099918708	0.958545631969191
Merged-chr19-55234715-2	chr19	55234615	55234815	+	615.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081076, intron 3 of 20)	intron (NM_001081076, intron 3 of 20)	6521.0	NM_001081076	73707.0	Mm.489987	NM_001081076	ENSMUSG00000055523	Gucy2g	2410077I05Rik|GC-G	guanylate cyclase 2g	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36121409-4	chr1	36121303	36121503	+	953.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22910.0	NR_105862	102465540.0		NR_105862	ENSMUSG00000098752	Mir6897	Gm27652|mmu-mir-6897	microRNA 6897	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-143978308-1	chr5	143978208	143978408	+	610.0	f1_balb.idr	Intergenic	Intergenic	36545.0	NM_177682	231874.0	Mm.320432	NM_177682	ENSMUSG00000029617	Ccz1	AU022870	CCZ1 vacuolar protein trafficking and biogenesis associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-72244529-1	chr2	72244429	72244629	+	572.0	f0_balb.idr	intron (NM_001355478, intron 25 of 26)	intron (NM_001355478, intron 25 of 26)	-41108.0	NM_023057	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-13300386-3	chr9	13300300	13300500	+	899.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53444.0	NM_025534	66396.0	Mm.290620	NM_025534	ENSMUSG00000079084	Ccdc82	2310043N13Rik	coiled-coil domain containing 82	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-109220563-7	chr2	109220469	109220669	+	953.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029790, intron 2 of 5)	intron (NM_029790, intron 2 of 5)	57721.0	NM_029790	76894.0	Mm.330451	NM_029790	ENSMUSG00000057234	Mettl15	0610027B03Rik|AI303697|AW049952|Mett5d1	methyltransferase like 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-102625581-3	chr9	102625534	102625734	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181394)	promoter-TSS (NM_181394)	490.0	NM_001301689	28135.0	Mm.38910	NM_001081122	ENSMUSG00000032534	Cep63	4921501M07|AL450317.13gm1|AW107703|CD20R|D9Mgc41|D9Mgc48e|ET2	centrosomal protein 63	protein-coding	1.47785955718548	2.54902199391104	2.45790021062177	1.55463213418208	2.1035103814657	2.26659804003122	1.15066717558792	1.3657238547582	-0.741761455844828	0.488536638226773	0.933453007555711
Merged-chr3-90390890-2	chr3	90390790	90390990	+	799.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011988)	promoter-TSS (NM_011988)	-952.0	NM_011988	26568.0	Mm.45519	NM_011988	ENSMUSG00000027932	Slc27a3	Acsvl3|FATP-3|FATP3|Vlcs-3	solute carrier family 27 (fatty acid transporter), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-122652722-2	chr6	122652622	122652822	+	737.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	26298.0	NM_139218	73708.0	Mm.27982	NM_139218	ENSMUSG00000046323	Dppa3	2410075G02Rik|PCG7|PGC7|Stella	developmental pluripotency-associated 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-11468934-2	chr16	11468834	11469034	+	636.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028964, intron 13 of 20)	intron (NM_028964, intron 13 of 20)	63286.0	NM_001290148	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-74580146-1	chr16	74580046	74580246	+	751.0	f1_c57bl6.idr	intron (NM_001358493, intron 1 of 28)	Lx5|LINE|L1	-168321.0	NM_175549	268902.0	Mm.171736	NM_175549	ENSMUSG00000052516	Robo2	2600013A04Rik|9430089E08Rik|BB097918|D230004I22Rik|mKIAA1568	roundabout guidance receptor 2	protein-coding	0.870665605621143	0.864449385329358	0.306045224237557	0.447629935828495	0.296623834401848	0.63925421389667	0.307172773974161	0.450400326543013	-1.67331092727684	0.366690261786022	1
Merged-chr4-3681737-4	chr4	3681636	3681836	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 1 of 12)	intron (NM_001111096, intron 1 of 12)	3615.0	NM_010747	17096.0	Mm.317331	NM_010747	ENSMUSG00000042228	Lyn	AA407514|Hck-2|p53Lyn|p56Lyn	LYN proto-oncogene, Src family tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-6753581-4	chr10	6753473	6753673	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RCHARR1|DNA|hAT-Charlie	-5020.0	NM_001302794	18390.0	Mm.438000	NM_011013	ENSMUSG00000000766	Oprm1	M-OR-1|MOP-R|MOR-1|MOR-1O|Oprm|mor|muOR	opioid receptor, mu 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-31019709-3	chr17	31019600	31019800	+	742.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37994.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-29484845-4	chr6	29484706	29484906	+	990.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029985, intron 34 of 37)	intron (NM_001029985, intron 34 of 37)	13369.0	NM_001145360	668210.0	Mm.420607	NM_001145360	ENSMUSG00000090685	Gm9047	EG668210	predicted gene 9047	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56218930-4	chr17	56218833	56219033	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172624)	promoter-TSS (NM_172624)	-44.0	NM_172624	224897.0	Mm.205535	NM_172624	ENSMUSG00000001229	Dpp9	6430584G11Rik|A330078I11|DPP IX|DPRP2	dipeptidylpeptidase 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-89294767-4	chr4	89294690	89294890	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009877)	promoter-TSS (NM_009877)	-171.0	NM_009877	12578.0	Mm.4733	NM_009877	ENSMUSG00000044303	Cdkn2a	ARF-INK4a|Arf|INK4a-ARF|Ink4a/Arf|MTS1|Pctr1|p16|p16(INK4a)|p16INK4a|p19<ARF>|p19ARF	cyclin dependent kinase inhibitor 2A	protein-coding	2.45489977206378	1.59653060617648	1.34516151108475	2.13633070562085	2.47648662669448	1.13259865302412	1.3543087608561	1.67153767675109	-0.458207861912754	0.68176005352593	0.995882295196263
Merged-chr4-141722543-1	chr4	141722443	141722643	+	728.0	f1_c57bl6.idr	intron (NM_001017966, intron 1 of 9)	intron (NM_001017966, intron 1 of 9)	876.0	NM_001017966	68817.0	Mm.393721	NM_001017966	ENSMUSG00000078515	Ddi2	1110056G13Rik|1700027M01Rik|9130022E05Rik|AI604911|AU040698	DNA-damage inducible protein 2	protein-coding	1.70380465822241	1.31221871495318	0.872400916410384	1.71736866864092	1.53810251490653	0.891919682191577	0.875952823442992	1.90474491183549	-0.194038732214581	0.888143941172333	0.998431161219273
Merged-chr8-70656346-1	chr8	70656246	70656446	+	578.0	f1_c57bl6.idr	intron (NM_023217, intron 2 of 4)	intron (NM_023217, intron 2 of 4)	3392.0	NM_023217	66522.0	Mm.154906	NM_023217	ENSMUSG00000056204	Pgpep1	2810003H13Rik|Gm19458|PAP-I|PGP|PGP-I|PGPI|Pcp	pyroglutamyl-peptidase I	protein-coding	-1.21575676353841	-1.1882771616738	-1.1995328574972	-1.2087786211754	-1.21524488394202	-1.18583800543462	-1.19698481468061	-0.540595393272118	2.74438217975722	0.425994238664144	1
Merged-chr2-155020273-2	chr2	155020173	155020373	+	543.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_015770, intron 1 of 3)	ERVB4_1-I_MM-int|LTR|ERVK	6703.0	NM_015770	50518.0	Mm.315593	NM_015770	ENSMUSG00000027596	a	A<y>|ASIP|ASP|As	nonagouti	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-68262057-2	chr15	68261957	68262157	+	649.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER20C_Mm|LTR|ERVK	-3201.0	NM_198644	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-99449644-2	chr10	99449544	99449744	+	600.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	4.5SRNA|scRNA|scRNA	-159527.0	NR_038019	100504202.0	Mm.403801	NR_038019	ENSMUSG00000111962	Gm20110	-	predicted gene, 20110	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-59808608-2	chr11	59808508	59808708	+	681.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_073164, intron 1 of 12)	intron (NR_073164, intron 1 of 12)	993.0	NM_001271357	216805.0	Mm.339640	NM_146018	ENSMUSG00000032633	Flcn	AU014660|B430214A04Rik|Bhd|FLCL	folliculin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4682411-2	chr16	4682311	4682511	+	570.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1659.0	NM_023646	83945.0	Mm.248337	NM_023646	ENSMUSG00000004069	Dnaja3	1200003J13Rik|1810053A11Rik|C81173|Tid-1|Tid1l	DnaJ heat shock protein family (Hsp40) member A3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153478763-2	chr2	153478663	153478863	+	766.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001134300, intron 2 of 10)	intron (NM_001134300, intron 2 of 10)	-34284.0	NM_001001986	329540.0	Mm.50600	NM_001001986	ENSMUSG00000061411	Nol4l	4931410H15|8430427H17Rik|AI429157|Gm1636	nucleolar protein 4-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134333329-1	chr6	134333229	134333429	+	577.0	f0_balb.idr	intron (NR_153848, intron 3 of 8)	intron (NR_153848, intron 3 of 8)	-63000.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	0.8162669263096	1.24391490779434	0.514142784578615	0.504762113906559	0.491260725139275	1.67959693608022	0.734880946680341	1.02195630616142	1.12817993846583	0.480969190986992	0.929210758613564
Merged-chr17-34118223-8	chr17	34118110	34118310	+	879.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001204973, intron 2 of 12)	intron (NM_001204973, intron 2 of 12)	1690.0	NR_037970	14312.0	Mm.3444	NM_010238	ENSMUSG00000024335	Brd2	AW228947|D17H6S113E|Frg-1|Fsrg-1|Fsrg1|Nat|Ring3|Rnf3|mKIAA4005	bromodomain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34915532-4	chr17	34915422	34915622	+	808.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023557, intron 1 of 20)	intron (NM_023557, intron 1 of 20)	1056.0	NM_023557	70129.0	Mm.183126	NM_023557	ENSMUSG00000007034	Slc44a4	2210409B01Rik|NG22|mTPPT1	solute carrier family 44, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-72303835-4	chr8	72303758	72303958	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15204.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167751756-4	chr2	167751659	167751859	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60582.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-119754509-2	chr13	119754409	119754609	+	571.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175538, intron 1 of 3)	intron (NM_175538, intron 1 of 3)	1373.0	NM_175538	245269.0	Mm.403943	NM_175538	ENSMUSG00000095930	Nim1k	E130304F04Rik|Nim1	NIM1 serine/threonine protein kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-86524008-2	chr1	86523908	86524108	+	612.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2549.0	NR_153834	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-116572143-4	chr10	116572029	116572229	+	928.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359563, intron 1 of 13)	intron (NM_001359563, intron 1 of 13)	8407.0	NM_001359250	72068.0	Mm.351553	NM_028082	ENSMUSG00000020166	Cnot2	2600016M12Rik|2810470K03Rik|AA537049|AA959607|AW557563|C79650	CCR4-NOT transcription complex, subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55713197-2	chr14	55713097	55713297	+	856.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019984)	promoter-TSS (NM_019984)	-109.0	NM_019984	21816.0	Mm.41964	NM_019984	ENSMUSG00000022218	Tgm1	2310004J08Rik|Tgase1	transglutaminase 1, K polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-91590230-6	chr12	91590091	91590291	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031391)	promoter-TSS (NM_031391)	296.0	NM_175335	83602.0	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16254464-4	chr7	16254366	16254566	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001173550, intron 1 of 1)	intron (NM_001173550, intron 1 of 1)	4872.0	NM_001173550	12273.0	Mm.247623	NM_007577	ENSMUSG00000049130	C5ar1	C5aR|C5r1|Cd88|D7Msu1	complement component 5a receptor 1	protein-coding	-0.211688096057965	-0.187863317967502	1.05228761991481	-0.201538127484599	-0.210163501198808	-0.186151895380189	0.370796728476206	-0.200483224149551	-1.70931343727012	0.470863106416256	1
Merged-chr3-8098530-3	chr3	8098401	8098601	+	589.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-143614.0	NR_040587	75476.0	Mm.491752	NR_040587	ENSMUSG00000100010	1700010I02Rik	-	RIKEN cDNA 1700010I02 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-78304143-2	chr17	78304043	78304243	+	677.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_015800, intron 5 of 16)	MIR|SINE|MIR	103895.0	NM_015800	50766.0	Mm.311912	NM_015800	ENSMUSG00000024074	Crim1	AU015004	cysteine rich transmembrane BMP regulator 1 (chordin like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-139630863-1	chr4	139630763	139630963	+	671.0	f1_c57bl6.idr	intron (NM_175438, intron 1 of 14)	URR1B|DNA|hAT-Charlie	7969.0	NM_175438	212647.0	Mm.273571	NM_175438	ENSMUSG00000028737	Aldh4a1	A930035F14Rik|Ahd-1|Ahd1|Aldh4|Aldh5a1|E330022C09|P5cd|P5cdh|P5cdhl|P5cdhs|Ssdh1	aldehyde dehydrogenase 4 family, member A1	protein-coding	0.0434167756309831	-0.496267531085851	-0.499971334865586	-0.502823233414139	0.0546277025787766	-0.495431500287674	-0.499155146778299	-0.502325373264262	0.0419527451125213	0.988073760716967	1
Merged-chr17-8284544-3	chr17	8284444	8284644	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018819, intron 1 of 3)	CpG	731.0	NM_018819	55951.0	Mm.288510	NM_018819	ENSMUSG00000023861	Mpc1	0610006G08Rik|3830411I18Rik|Brp44l	mitochondrial pyruvate carrier 1	protein-coding	0.87903240368867	0.946847886937258	2.27691926960342	1.85461802334238	1.09246997818934	2.01028276685781	1.81913858578304	1.14224593424266	-0.178162284322425	0.889354752104604	0.998431161219273
Merged-chr15-72832221-1	chr15	72832121	72832321	+	739.5	f1_balb.idr	intron (NM_001164641, intron 17 of 17)	intron (NM_001164641, intron 17 of 17)	-21897.0	NR_002864	353342.0	Mm.440245	NR_002864	ENSMUSG00000106847	Peg13	-	paternally expressed 13	ncRNA	0.223432858350979	1.74538067867164	0.686399592687985	0.240650113603689	1.08533253296858	0.266274039496228	0.253554681316912	0.242424575450843	-1.56469842752724	0.406059684428343	0.89095290927429
Merged-chr17-33920400-4	chr17	33920286	33920486	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009318, exon 3 of 8)	exon (NM_009318, exon 3 of 8)	908.0	NM_009318	21356.0	Mm.154457	NM_009318	ENSMUSG00000024308	Tapbp	D17Wsu91e|TPN	TAP binding protein	protein-coding	0.710360934331129	0.75443523550576	1.63339625843137	1.09764876014473	1.49467172910993	1.18410536083879	1.74440432724942	0.731153763089491	0.871789901246679	0.552311411204083	0.959523840754686
Merged-chr18-68889622-3	chr18	68889513	68889713	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_038051, exon 7 of 7)	non-coding (NR_038051, exon 7 of 7)	61915.0	NR_038051	78931.0	Mm.160155	NR_038051		4930546C10Rik	-	RIKEN cDNA 4930546C10 gene	ncRNA	0.319028520694712	0.349968909821911	0.339992834211705	0.332192178097246	1.31137562994856	0.35219758358701	1.22721782564191	0.959796070081129	4.6173629961759	0.0133321373097725	1
Merged-chr19-32178915-2	chr19	32178815	32179015	+	572.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 5 of 9)	intron (NM_144792, intron 5 of 9)	32098.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59599683-2	chr15	59599566	59599766	+	670.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026746, intron 6 of 6)	L2b|LINE|L2	-48988.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	0.509987866367436	0.545669570941501	1.49995080506568	0.525188779183946	0.688687284337611	0.777956049045491	1.42253894912696	1.15394135439597	0.765218396383269	0.636514708742288	0.982417279970648
Merged-chr2-109279816-2	chr2	109279716	109279916	+	820.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_139303)	promoter-TSS (NM_139303)	-922.0	NM_139303	228421.0	Mm.274086	NM_139303	ENSMUSG00000027115	Kif18a	AU024633|B130001M12Rik|gcd2	kinesin family member 18A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-29917010-4	chr6	29916912	29917112	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_104576)	promoter-TSS (NR_104576)	-1.0	NM_177204	320609.0	Mm.56097	NM_177204	ENSMUSG00000039629	Strip2	D330017J20Rik|Fam40b	striatin interacting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-121713755-4	chr11	121713598	121713798	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144797, intron 2 of 3)	intron (NM_144797, intron 2 of 3)	11271.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28630984-1	chr7	28630884	28631084	+	598.0	f1_balb.idr	promoter-TSS (NM_175319)	promoter-TSS (NM_175319)	31.0	NM_175319	101744.0	Mm.26022	NM_175319	ENSMUSG00000037469	Acp7	AU017076|C330005M16Rik|Papl	acid phosphatase 7, tartrate resistant	protein-coding	-2.18375600819439	-2.15556918946382	-2.16409311609999	-2.17109492323169	-2.18177734563694	-2.01960173909294	-2.16216348594872	-2.16984160310277	0.759018020146679	0.829933115115583	1
Merged-chr7-142384063-2	chr7	142383970	142384170	+	848.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_009983, intron 2 of 8)	intron (NM_009983, intron 2 of 8)	3800.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	-0.32326584982899	-0.562018396995413	-0.565186700011719	-0.0670434157368543	-0.317238376629306	-0.56130177911771	-0.564489428799003	-0.567194854344348	-1.53500505152074	0.569038873549166	1
Merged-chr12-16879503-1	chr12	16879403	16879603	+	1000.0	f1_balb.idr	Intergenic	Intergenic	-15475.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	2.26707388670654	2.31479638060928	2.35319342913485	1.90788781868731	1.67723036128134	2.83802565394398	2.25465949610546	1.75280881796257	0.00599408177828518	0.994662313768912	0.998431161219273
Merged-chr16-58299694-3	chr16	58299595	58299795	+	713.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-108840.0	NM_001356484	73379.0	Mm.373589	NM_028523	ENSMUSG00000035107	Dcbld2	1700055P21Rik|AW146002|CLCP1|Esdn	discoidin, CUB and LCCL domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133676982-2	chr4	133676882	133677082	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-3816.0	NM_001356466	230801.0	Mm.217004	NM_178698	ENSMUSG00000043257	Pigv	B330013B03|D430024F16Rik	phosphatidylinositol glycan anchor biosynthesis, class V	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52603893-2	chr13	52603793	52603993	+	882.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011518, intron 1 of 13)	intron (NM_011518, intron 1 of 13)	7011.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-129363430-4	chr6	129363332	129363532	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177686, intron 5 of 5)	Lx7|LINE|L1	13188.0	NM_177686	232413.0	Mm.90241	NM_177686	ENSMUSG00000053063	Clec12a	CLL-1|D230024O04|KLRL1|Micl	C-type lectin domain family 12, member a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-72403052-1	chr11	72402952	72403152	+	548.0	f1_balb.idr	exon (NM_177776, exon 3 of 8)	exon (NM_177776, exon 3 of 8)	8661.0	NM_177776	276829.0	Mm.46732	NM_177776	ENSMUSG00000045667	Smtnl2	D130058I21Rik	smoothelin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100589878-2	chr7	100589778	100589978	+	559.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_003559, intron 1 of 7)	intron (NR_003559, intron 1 of 7)	1536.0	NR_153425	52443.0	Mm.473730	NM_198831	ENSMUSG00000030706	Mrpl48	1810030E20Rik|2610028L11Rik|CGI-118|D4Ertd786e|L48mt|MRP-L48	mitochondrial ribosomal protein L48	protein-coding	2.18350662993915	2.58159973067027	2.91975393240898	2.84020231131467	2.20094155999361	2.60015172324684	2.94186937027828	2.85436011775829	0.0368745191680635	0.9601027462347	0.998431161219273
Merged-chr11-44356402-4	chr11	44356286	44356486	+	891.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB2|LINE|L1	-43677.0	NM_001303244	16160.0	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-133650254-2	chr3	133650154	133650354	+	773.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-105864.0	NM_001346736	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-23137206-2	chr16	23137106	23137306	+	778.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9330.0	NM_009605	11450.0	Mm.3969	NM_009605	ENSMUSG00000022878	Adipoq	30kDa|APN|Acdc|Acrp30|Ad|GBP28|adipo|apM1	adiponectin, C1Q and collagen domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-62554135-3	chr11	62554064	62554264	+	889.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_002875)	TTS (NR_002875)	2433.0	NM_001313984	22187.0	Mm.371592	NM_011664	ENSMUSG00000019505	Ubb	AL033289|Rps27a|Uba52|Ubb2|Ubc	ubiquitin B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-44427993-4	chr15	44427893	44428093	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175009)	promoter-TSS (NM_175009)	-118.0	NM_175009	223527.0	Mm.291828	NM_175009	ENSMUSG00000022338	Eny2	1810057B09Rik|6720481I12|DC6|Ey2	ENY2 transcription and export complex 2 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-116251748-4	chr3	116251647	116251847	+	866.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_022427, exon 2 of 2)	exon (NM_022427, exon 2 of 2)	1737.0	NM_022427	64378.0	Mm.40025	NM_022427	ENSMUSG00000068696	Gpr88	AW061286|Strg	G-protein coupled receptor 88	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124501033-2	chr5	124500933	124501133	+	600.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021430, intron 6 of 6)	intron (NM_021430, intron 6 of 6)	17878.0	NM_029532	76167.0	Mm.156035	NM_029532	ENSMUSG00000029402	Snrnp35	6330548G22Rik	small nuclear ribonucleoprotein 35 (U11/U12)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-76454701-2	chr11	76454601	76454801	+	766.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346670, intron 12 of 21)	intron (NM_001346670, intron 12 of 21)	13764.0	NM_001291186	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-43772039-4	chr13	43771959	43772159	+	914.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13053.0	NM_009856	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-93070691-2	chr1	93070591	93070791	+	813.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001294150, intron 9 of 46)	intron (NM_001294150, intron 9 of 46)	11789.0	NM_001294150	16560.0	Mm.276408	NM_008440	ENSMUSG00000014602	Kif1a	ATSV|C630002N23Rik|Gm1626|Kns1	kinesin family member 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-90164086-1	chr9	90163986	90164186	+	816.0	f1_c57bl6.idr	intron (NM_001003911, intron 1 of 23)	intron (NM_001003911, intron 1 of 23)	1108.0	NM_001311115	108153.0	Mm.102141	NM_001003911	ENSMUSG00000032363	Adamts7	ADAM-TS7|ADAMTS7B	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 7	protein-coding	-0.0917359811009199	-0.0758413435605693	0.0971577432949348	-0.0850628657108912	-0.0907429316253914	0.428100893551304	0.603479530212724	0.0833735611133913	3.06041578044184	0.157986755017554	1
Merged-chr10-127239499-2	chr10	127239354	127239554	+	568.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039000, intron 13 of 28)	CpG	23909.0	NM_008447	16572.0	Mm.30355	NM_008447	ENSMUSG00000074657	Kif5a	D10Bwg0738e|Khc|Kif5|Kns|mKIAA4086	kinesin family member 5A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53050765-2	chr4	53050665	53050865	+	910.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 35 of 49)	intron (NM_013454, intron 35 of 49)	38885.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-116964644-2	chr13	116964544	116964744	+	661.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081009, intron 3 of 26)	intron (NM_001081009, intron 3 of 26)	60872.0	NM_001081009	52552.0	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-142903207-1	chr5	142903107	142903307	+	591.0	f0_c57.idr	TTS (NM_007393)	TTS (NM_007393)	3547.0	NM_007393	11461.0	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33777408-4	chr16	33777365	33777565	+	917.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-16572.0	NM_010739	17063.0	Mm.3177	NM_010739	ENSMUSG00000022824	Muc13	114/A10|14/A10|AI159736|Lrrp|Ly64|NJ-1	mucin 13, epithelial transmembrane	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-3903867-3	chr7	3903768	3903968	+	904.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011087, intron 1 of 9)	intron (NM_011087, intron 1 of 9)	-5718.0	NM_001289428	18729.0	Mm.326531	NM_008848		Pira6	12M1|Pira10|p91B	paired-Ig-like receptor A6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-34338872-3	chr18	34338775	34338975	+	649.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15-int|LTR|ERVL	7730.0	NM_025527	66384.0	Mm.29452	NM_025527	ENSMUSG00000014504	Srp19	2310020D23Rik	signal recognition particle 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-19117116-4	chr10	19116995	19117195	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24654.0	NR_038021	100504265.0	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41773274-2	chr19	41773174	41773374	+	848.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027667, intron 10 of 11)	intron (NM_027667, intron 10 of 11)	26313.0	NR_040320	100502871.0	Mm.394485	NR_040320		Gm19424	-	predicted gene, 19424	ncRNA	1.148017286894	0.535000651940675	1.63854516727158	0.515428489491716	0.822473308697653	0.537454881506343	1.05590484361554	0.711608154145822	-1.19188733300628	0.457723335951963	0.919570891419578
Merged-chr11-101984839-4	chr11	101984728	101984928	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028207)	promoter-TSS (NM_028207)	-37.0	NM_028207	72349.0	Mm.196295	NM_028207	ENSMUSG00000003518	Dusp3	2210015O03Rik|5031436O03Rik|T-DSP11|VHR	dual specificity phosphatase 3 (vaccinia virus phosphatase VH1-related)	protein-coding	5.72790660137538	5.25555498404166	5.23925056407669	4.89251691390624	5.55700795874724	5.49803500704833	5.13359511586697	5.63003723092499	0.173770743460165	0.557840979340256	0.960321604678676
Merged-chr15-72837954-3	chr15	72837858	72838058	+	855.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164641, intron 17 of 17)	intron (NM_001164641, intron 17 of 17)	-27634.0	NR_002864	353342.0	Mm.440245	NR_002864	ENSMUSG00000106847	Peg13	-	paternally expressed 13	ncRNA	2.68395036080406	2.78220647016455	3.29766101416592	2.37397404207769	2.70555054394161	2.80220521333616	3.25430216994092	2.38498333833358	-0.0106663909371797	0.987976561034694	0.998431161219273
Merged-chr13-37666526-4	chr13	37666463	37666663	+	847.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-159475.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-67821441-4	chr5	67821319	67821519	+	991.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038999, intron 1 of 36)	C-rich|Low_complexity|Low_complexity	26012.0	NM_009727	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-23752297-4	chr18	23752204	23752404	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162942)	promoter-TSS (NM_001162942)	1.0	NR_126066	100502834.0	Mm.213614	NR_126066	ENSMUSG00000086287	Gm15972	-	predicted gene 15972	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-84035104-1	chr17	84035004	84035204	+	677.0	f0_balb.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	36552.0	NR_130994	78148.0	Mm.243918	NR_130994		8430430B14Rik	-	RIKEN cDNA 8430430B14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-93399373-3	chr15	93399260	93399460	+	856.7222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001358749, exon 2 of 9)	5' UTR (NM_001358749, exon 2 of 9)	896.0	NM_001285863	223828.0	Mm.74208	NM_146062	ENSMUSG00000036167	Pphln1	CR|HSPC206|HSPC232	periphilin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78893669-1	chr15	78893569	78893769	+	592.0	f1_balb.idr	intron (NM_145929, intron 16 of 16)	intron (NM_145929, intron 16 of 16)	1829.0	NR_105920	102466210.0		NR_105920	ENSMUSG00000099267	Mir6955	Gm27769|mmu-mir-6955	microRNA 6955	ncRNA	0.258535369631047	0.28487467427211	0.276340052192359	0.269694022623896	0.984787950055254	0.28678660636004	0.91724005444997	1.15767050951421	4.47089808979666	0.0208687959743779	1
Merged-chr11-89016843-1	chr11	89016743	89016943	+	919.0	f1_c57bl6.idr	3' UTR (NM_009546, exon 9 of 9)	3' UTR (NM_009546, exon 9 of 9)	17440.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	-0.499413470377264	-1.03834020755092	-1.04978821074571	-1.05496685457339	-1.05780584112407	-1.03585937750212	-0.870737526210697	-1.05461535941458	-1.71235507421434	0.593270402199609	1
Merged-chr11-95714091-4	chr11	95713990	95714190	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1336.0	NR_045780	432396.0	Mm.426849	NR_045780	ENSMUSG00000086191	Zfp652os	1110035M17Rik	zinc finger protein 652, opposite strand	ncRNA	2.88695668640067	3.85109291362317	4.11543344759011	4.11294993146049	2.913585807417	3.87875938966805	4.14546648593584	4.13256395668412	0.0366111260129141	0.946029678075392	0.998431161219273
Merged-chr1-136018031-4	chr1	136017924	136018124	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001160146)	promoter-TSS (NM_001160146)	23.0	NM_025439	66241.0	Mm.41773	NM_025439	ENSMUSG00000026411	Tmem9	1500015G18Rik|AW545782	transmembrane protein 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-49552965-4	chr18	49552869	49553069	+	928.7666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29680.0	NR_033785	67321.0	Mm.245802	NR_033785	ENSMUSG00000100297	1700044K03Rik	-	RIKEN cDNA 1700044K03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-155068714-2	chr4	155068614	155068814	+	671.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001042407, exon 3 of 6)	exon (NM_001042407, exon 3 of 6)	1684.0	NM_001042407	668173.0	Mm.133114	NM_001042407	ENSMUSG00000029047	Pex10	AV128229|Gm142	peroxisomal biogenesis factor 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-116052876-4	chr4	116052772	116052972	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028142, intron 1 of 5)	intron (NM_028142, intron 1 of 5)	1004.0	NM_028142	72181.0	Mm.282560	NM_028142	ENSMUSG00000028706	Nsun4	2310010O12Rik|2810405F18Rik|AI507900|Shtap	NOL1/NOP2/Sun domain family, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-155841197-4	chr4	155841124	155841324	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024263, intron 3 of 9)	CpG	1544.0	NM_024263	74761.0	Mm.159028	NM_024263	ENSMUSG00000029070	Mxra8	1200013A08Rik|1700095D18Rik|AI131686|Asp3|Dicam	matrix-remodelling associated 8	protein-coding	-0.792001802060171	-0.78030382356344	-0.589839469387814	-0.787074365384514	-0.791267077421303	-0.778788259860017	0.0481304135835825	-0.786557418654904	2.43761010818395	0.3980722012154	1
Merged-chr8-34918625-4	chr8	34918506	34918706	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175091, intron 2 of 26)	intron (NM_175091, intron 2 of 26)	47084.0	NM_175091	21951.0	Mm.88364	NM_175091	ENSMUSG00000031529	Tnks	4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-27198953-2	chr14	27198853	27199053	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289686, intron 2 of 12)	intron (NM_001289686, intron 2 of 12)	-39057.0	NM_027871	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-65508394-2	chr6	65508294	65508494	+	760.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-82004.0	NM_001001495	414084.0	Mm.117558	NM_001001495	ENSMUSG00000044162	Tnip3	9030611K07Rik|ABIN-3|LIND	TNFAIP3 interacting protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-154737193-3	chr2	154737144	154737344	+	843.56665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14|LTR|ERV1	-53866.0	NM_001139512	19383.0	Mm.221440	NM_023130	ENSMUSG00000027593	Raly	AI663842|Merc	hnRNP-associated with lethal yellow	protein-coding	1.01590567924	1.95670725947924	1.11898423987765	1.08210165763345	3.63867400243678	2.90625698200527	2.88745287722785	2.14941577144756	4.13205782570012	0.00021064247563641	0.005616196494857
Merged-chr6-5390389-3	chr6	5390295	5390495	+	998.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355662)	promoter-TSS (NM_001355662)	-15.0	NM_001355662	65255.0	Mm.51340	NM_023048	ENSMUSG00000042607	Asb4	8430401O13Rik|AV117194|AW060255	ankyrin repeat and SOCS box-containing 4	protein-coding	3.21473469768799	1.58437219592413	3.41336789531252	3.1002916912993	3.51335332102056	2.9299396111928	2.82951596321288	1.76759062720232	-0.152134500097851	0.851607668995154	0.998431161219273
Merged-chr4-9116016-4	chr4	9115901	9116101	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-153292.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101362903-4	chr7	101362807	101363007	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040111, intron 1 of 33)	intron (NM_001040111, intron 1 of 33)	14838.0	NM_001040111	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-91133383-2	chr8	91133283	91133483	+	856.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001302267, intron 1 of 10)	intron (NM_001302267, intron 1 of 10)	356.0	NM_001358938	14339.0	Mm.324588	NM_010241	ENSMUSG00000031667	Aktip	AL023020|Fif|Ft|Ft1|Fts	thymoma viral proto-oncogene 1 interacting protein	protein-coding	0.975266079659408	1.28105295911025	2.056646612466	2.08069929883286	1.6012788541962	1.04217632252796	1.86488458983236	1.80328006550523	-0.242109158270331	0.842845974255728	0.998431161219273
Merged-chr4-135273533-2	chr4	135273433	135273633	+	765.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013885)	promoter-TSS (NM_013885)	-773.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-142018568-2	chr4	142018468	142018668	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_131014, intron 1 of 1)	intron (NR_131014, intron 1 of 1)	670.0	NR_131014	78917.0	Mm.139995	NR_131014	ENSMUSG00000085761	4930455G09Rik	-	RIKEN cDNA 4930455G09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-110449309-4	chr5	110449198	110449398	+	916.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001142642)	promoter-TSS (NM_001142642)	-795.0	NM_001142642	381668.0	Mm.348782	NM_028596	ENSMUSG00000043323	Fbrsl1	2410025L10Rik|AI467568|Gm1049|Gm29766|mKIAA1545	fibrosin-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-34046545-4	chr15	34046436	34046636	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36183.0	NM_001357926	67154.0	Mm.130883	NM_026002	ENSMUSG00000022255	Mtdh	2610103J23Rik|3D3|3D3/Lyric|AEG-1|AV353288|D8Bwg1112e|Lyric	metadherin	protein-coding	7.2200402358144	7.01324420028589	7.00987381901769	6.79039872122883	7.33420910132854	6.80010092083413	7.09131943227212	6.83828945375069	0.0206599199617568	0.910459331052088	0.998431161219273
Merged-chr1-107492676-1	chr1	107492576	107492776	+	542.0	f0_balb.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-18747.0	NM_001174170	18788.0	Mm.271870	NM_011111	ENSMUSG00000062345	Serpinb2	PAI-2|Planh2|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-37867258-4	chr1	37867159	37867359	+	734.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1961.0	NM_001290720	211484.0	Mm.332756	NM_207228	ENSMUSG00000060771	Tsga10	4933432N21Rik|AI843383|Gm217|Mtsga10	testis specific 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-58453585-1	chr19	58453485	58453685	+	638.0	f1_balb.idr	intron (NM_001285457, intron 2 of 9)	intron (NM_001285457, intron 2 of 9)	1813.0	NM_001285457	14585.0	Mm.88367	NM_010279	ENSMUSG00000025089	Gfra1	AU042498	glial cell line derived neurotrophic factor family receptor alpha 1	protein-coding	1.15811163251305	2.83117239078362	2.13232783443154	2.55275685313112	1.16758119310829	2.3853797651975	2.15080586332371	3.47779223221371	0.513004654972176	0.617491777921987	0.977517868708383
Merged-chr6-50305129-4	chr6	50305016	50305216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027881, intron 18 of 21)	intron (NM_027881, intron 18 of 21)	-43347.0	NM_018769	54722.0	Mm.248361	NM_018769	ENSMUSG00000029821	Gsdme	2310037D07Rik|4932441K13Rik|Dfna5|Dfna5h|EG14210|Fin15	gasdermin E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-20655950-3	chr14	20655814	20656014	+	859.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021508, intron 1 of 5)	intron (NM_021508, intron 1 of 5)	626.0	NM_021508	59011.0	Mm.439911	NM_021508	ENSMUSG00000068697	Myoz1	2310001N11Rik|AV090278|FATZ|Myoz	myozenin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-44922694-4	chr2	44922593	44922793	+	851.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61071.0	NM_172662	227835.0	Mm.314312	NM_172662	ENSMUSG00000036890	Gtdc1	E330008O22Rik	glycosyltransferase-like domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-55537659-2	chr9	55537559	55537759	+	629.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-3490.0	NM_027397	104360.0	Mm.273996	NM_027397	ENSMUSG00000032318	Isl2	3110001N10Rik	insulin related protein 2 (islet 2)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-98517524-4	chr15	98517401	98517601	+	929.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001289437)	TTS (NM_001289437)	2333.0	NR_034051	100217417.0	Mm.486440	NR_034051	ENSMUSG00000065336	Snora34	MBI-89	small nucleolar RNA, H/ACA box 34	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-105766871-2	chr7	105766771	105766971	+	974.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162943, intron 2 of 20)	Tigger17a|DNA|TcMar-Tigger	-14636.0	NM_009906	12751.0	Mm.20837	NM_009906	ENSMUSG00000030894	Tpp1	Cln2|LPIC|TPP-1|TPP-I	tripeptidyl peptidase I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-115897266-2	chr13	115897169	115897369	+	872.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	412419.0	NM_021459	16392.0	Mm.42242	NM_021459	ENSMUSG00000042258	Isl1	-	ISL1 transcription factor, LIM/homeodomain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-84428834-3	chr1	84428703	84428903	+	799.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152915, intron 8 of 12)	intron (NM_152915, intron 8 of 12)	-144158.0	NM_001003948	98496.0	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4|P-CLI1	phosphotyrosine interaction domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85288066-2	chr12	85287966	85288166	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172414)	promoter-TSS (NM_172414)	-525.0	NM_172414	72350.0	Mm.158810	NM_172414	ENSMUSG00000045064	Zc2hc1c	2810002I04Rik|AV046379|Fam164c	zinc finger, C2HC-type containing 1C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-95728992-4	chr16	95728895	95729095	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26588.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135461067-6	chr5	135461048	135461248	+	853.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146001, intron 1 of 30)	intron (NM_146001, intron 1 of 30)	-66602.0	NM_148932	107939.0	Mm.28399	NM_148932	ENSMUSG00000053293	Pom121	2610027A18Rik|C80273|mKIAA0618	nuclear pore membrane protein 121	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-3158022-2	chr11	3157929	3158129	+	856.083374	f0_balb.idr|f1_c57bl6.idr	intron (NM_030207, intron 10 of 32)	intron (NM_030207, intron 10 of 32)	34008.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-24351891-2	chr5	24351791	24351991	+	546.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013569)	promoter-TSS (NM_013569)	-287.0	NM_013569	16511.0	Mm.6539	NM_013569	ENSMUSG00000038319	Kcnh2	AI326795|ERG1|LQT|Lqt2|M-erg|Merg1|merg1a|merg1b	potassium voltage-gated channel, subfamily H (eag-related), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-90712170-2	chr6	90712070	90712270	+	715.722229	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356440, intron 1 of 13)	intron (NM_001356440, intron 1 of 13)	4359.0	NM_001134383	232227.0	Mm.196943	NM_182784	ENSMUSG00000034312	Iqsec1	AW561907|BC026481|BRAG2|D6Ertd349e|cI-43	IQ motif and Sec7 domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-135594441-2	chr3	135594341	135594541	+	546.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008689, intron 18 of 24)	intron (NM_008689, intron 18 of 24)	97106.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-32499395-2	chr9	32499295	32499495	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008026, intron 1 of 8)	intron (NM_008026, intron 1 of 8)	42057.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126746997-4	chr7	126746948	126747148	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12578.0	NM_011952	26417.0	Mm.8385	NM_011952	ENSMUSG00000063065	Mapk3	Erk-1|Erk1|Ert2|Esrk1|Mnk1|Mtap2k|Prkm3|p44|p44erk1|p44mapk	mitogen-activated protein kinase 3	protein-coding	1.0116013594685	1.25871986469746	1.08714887183848	1.17937916918911	1.0187197441751	1.13114139100309	1.09512546427833	1.06397024600294	-0.302293903312446	0.812614129235749	0.998431161219273
Merged-chr1-7086177-4	chr1	7086094	7086294	+	986.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2726.0	NM_183028	319263.0	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4085181-4	chr19	4085081	4085281	+	775.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013878, intron 3 of 6)	intron (NM_013878, intron 3 of 6)	1662.0	NM_013878	29866.0	Mm.46268	NM_013878	ENSMUSG00000024857	Cabp2	-	calcium binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-51551665-6	chr6	51551492	51551692	+	943.2666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361577, intron 1 of 6)	MTC|LTR|ERVL-MaLR	6299.0	NM_001361577	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-88043609-2	chr6	88043509	88043709	+	812.700012	f1_balb.idr|f1_c57bl6.idr	intron (NM_001293652, intron 1 of 7)	intron (NM_001293652, intron 1 of 7)	1408.0	NM_001293653	19349.0	Mm.333233	NM_009005	ENSMUSG00000079477	Rab7	Rab7a	RAB7, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-20361903-4	chr16	20361800	20362000	+	967.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013790, intron 24 of 29)	RLTR9E|LTR|ERVK	-36496.0	NM_183158	224044.0	Mm.276400	NM_183158	ENSMUSG00000022818	Cyp2ab1	EG224044|F730023N20	cytochrome P450, family 2, subfamily ab, polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-53398514-4	chr9	53398420	53398620	+	813.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_212445, intron 7 of 7)	intron (NM_212445, intron 7 of 7)	2366.0	NR_105807	102466640.0		NR_105807	ENSMUSG00000098362	Mir130c	Gm27641|mmu-mir-130c	microRNA 130c	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-43477629-2	chr10	43477529	43477729	+	687.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1511.0	NM_199028	331623.0	Mm.490388	NM_199028	ENSMUSG00000038214	Bend3	mKIAA1553	BEN domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-58822526-1	chr15	58822426	58822626	+	679.5	f0_balb.idr	intron (NM_175212, intron 1 of 6)	intron (NM_175212, intron 1 of 6)	901.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-90035642-2	chr7	90035542	90035742	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_110365, intron 1 of 5)	B3|SINE|B2	6483.0	NR_110364	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	1.20586135529492	0.655887032758253	0.981229493477217	0.808914275998161	1.30115101632733	0.6579327575406	0.989377335059032	1.19448762041917	0.628070801494466	0.672043598102084	1
Merged-chr10-44997746-2	chr10	44997646	44997846	+	582.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69468.0	NM_011156	19072.0	Mm.10281	NM_011156	ENSMUSG00000019849	Prep	AI047692|AI450383|D10Wsu136e|PEP|Pop	prolyl endopeptidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-54977886-2	chr11	54977786	54977986	+	541.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14946.0	NM_001271455	57783.0	Mm.259671	NM_021327	ENSMUSG00000020400	Tnip1	ABIN|ABIN-1|ABIN1|AU018810|Naf1|Nef|VAN	TNFAIP3 interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-93261786-2	chr10	93261693	93261893	+	821.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001282967, intron 2 of 3)	intron (NM_001282967, intron 2 of 3)	49366.0	NM_001322268	13713.0	Mm.4454	NM_013508	ENSMUSG00000008398	Elk3	D430049E23Rik|Erp|Etrp|Net|Sap-2	ELK3, member of ETS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-113658097-2	chr6	113657997	113658197	+	557.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 2 of 11)	intron (NM_001113553, intron 2 of 11)	19630.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97531908-4	chr11	97531804	97532004	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_018873, exon 12 of 20)	exon (NM_018873, exon 12 of 20)	-31564.0	NM_001289118	100141474.0	Mm.482426	NM_001289118	ENSMUSG00000047988	4933428G20Rik	-	RIKEN cDNA 4933428G20 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-80058651-2	chr15	80058551	80058751	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19928.0	NR_028282	100302601.0		NR_028282	ENSMUSG00000077734	Snord83b	MBII-10	small nucleolar RNA, C/D box 83B	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-116139732-4	chr9	116139629	116139829	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029575, intron 1 of 6)	intron (NM_029575, intron 1 of 6)	35634.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-13117428-3	chr16	13117325	13117525	+	881.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015769, intron 2 of 10)	intron (NM_015769, intron 2 of 10)	7689.0	NM_015769	50505.0	Mm.287837	NM_015769	ENSMUSG00000022545	Ercc4	AI606920|Xpf	excision repair cross-complementing rodent repair deficiency, complementation group 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-174344856-1	chr2	174344756	174344956	+	656.0	f0_balb.idr	intron (NM_001077507, intron 5 of 10)	intron (NM_001077507, intron 5 of 10)	14767.0	NM_001077510	14683.0	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-51941933-3	chr14	51941855	51942055	+	756.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-19182.0	NM_001011687	497071.0	Mm.378602	NM_001011687	ENSMUSG00000068392	Rnase13	-	ribonuclease, RNase A family, 13 (non-active)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-34511206-4	chr1	34511105	34511305	+	929.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12793.0	NM_001360855	21755.0	Mm.10725	NM_009355	ENSMUSG00000026125	Prss39	Tesp1	protease, serine 39	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3763306-4	chr12	3763210	3763410	+	819.729187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027869, intron 16 of 20)	intron (NR_027869, intron 16 of 20)	-43670.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-120028037-4	chr9	120027954	120028154	+	935.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4456.0	NM_011724	22437.0	Mm.10117	NM_011724	ENSMUSG00000079243	Xirp1	AI415219|Cmya1	xin actin-binding repeat containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-82145281-2	chr13	82145181	82145381	+	571.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	362034.0	NM_007684	12626.0	Mm.12481	NM_007684	ENSMUSG00000021537	Cetn3	MmCEN3	centrin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-80157883-2	chr11	80157783	80157983	+	938.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172133, intron 3 of 10)	intron (NM_172133, intron 3 of 10)	3721.0	NM_172133	216991.0	Mm.341520	NM_172133	ENSMUSG00000020709	Adap2	Centa2	ArfGAP with dual PH domains 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-109651020-4	chr11	109650959	109651159	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_021880, exon 1 of 11)	5' UTR (NM_021880, exon 1 of 11)	138.0	NM_001313976	19084.0	Mm.30039	NM_021880	ENSMUSG00000020612	Prkar1a	1300018C22Rik|RIalpha|Tse-1|Tse1	protein kinase, cAMP dependent regulatory, type I, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-86876741-1	chr4	86876641	86876841	+	604.0	f1_c57bl6.idr	intron (NM_001290543, intron 1 of 5)	B1_Mur1|SINE|Alu	2327.0	NM_139306	230379.0	Mm.45019	NM_139306	ENSMUSG00000038007	Acer2	2410116I05Rik|Asah3l|CRG-L1|maCER2	alkaline ceramidase 2	protein-coding	0.10786880970655	-0.317883962996994	-0.321534117445939	-0.172880232228	-0.328273164479951	-0.317058223403166	0.109946688409007	-0.170272736412792	-0.00960203939847567	0.996755508963867	1
Merged-chr19-16457305-2	chr19	16457205	16457405	+	562.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008137, intron 1 of 6)	intron (NM_008137, intron 1 of 6)	21638.0	NM_008137	14675.0	Mm.313181	NM_008137	ENSMUSG00000024697	Gna14	AU023208	guanine nucleotide binding protein, alpha 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-96707874-2	chr15	96707774	96707974	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8146.0	NM_175121	67760.0	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-183657297-4	chr1	183657178	183657378	+	855.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-91699.0	NR_151520	102637191.0	Mm.417076	NR_151520	ENSMUSG00000103305	Gm34068	-	predicted gene, 34068	ncRNA	2.32240838699877	2.62294695632156	2.53004152914117	2.54486824404389	1.40481867887781	1.28138194931763	1.24713073172539	2.7922159397896	-1.37449849418518	0.1818939408603	0.655513168938505
Merged-chr13-42258656-4	chr13	42258564	42258764	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42812.0	NM_010104	13614.0	Mm.14543	NM_010104	ENSMUSG00000021367	Edn1	ET-1|PPET1|preproET	endothelin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-108383457-3	chr4	108383315	108383515	+	912.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001099303, exon 1 of 3)	5' UTR (NM_001099303, exon 1 of 3)	240.0	NM_001099303	545667.0	Mm.380025	NM_001099303	ENSMUSG00000059816	Fam159a	Shisal2a	family with sequence similarity 159, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-24811961-2	chr13	24811861	24812061	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_024473, intron 4 of 4)	B2_Mm2|SINE|B2	10304.0	NM_024473	79555.0	Mm.266668	NM_024473	ENSMUSG00000019132	BC005537	8030460C05Rik|C78201	cDNA sequence BC005537	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-67479458-4	chr7	67479424	67479624	+	866.160706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-106666.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-63130828-4	chr14	63130717	63130917	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007798, intron 1 of 9)	intron (NM_007798, intron 1 of 9)	8355.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100369173-3	chr11	100369062	100369262	+	875.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010593, exon 14 of 14)	3' UTR (NM_010593, exon 14 of 14)	-13021.0	NM_010404	15114.0	Mm.281700	NM_010404	ENSMUSG00000006930	Hap1	HAP-1	huntingtin-associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-155821209-3	chr4	155821096	155821296	+	711.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207678, intron 8 of 10)	B2_Mm1a|SINE|B2	8707.0	NM_207678	56036.0	Mm.23492	NM_018856	ENSMUSG00000029068	Ccnl2	1700010A01Rik|1810019L15Rik|2010319M22Rik|AA409936|AW261738|Ania-6b|HCLA-150|Pcee|SB138	cyclin L2	protein-coding	2.7282057015234	2.70151103561802	2.4676214727542	3.41233369674586	2.29285969808228	3.08101727601493	3.16593347189044	3.29885892360624	0.228166533065013	0.74069248950176	0.998431161219273
Merged-chr3-108073415-2	chr3	108073315	108073515	+	563.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001346665)	TTS (NM_001346665)	11987.0	NM_001346665	109674.0	Mm.274335	NM_028779	ENSMUSG00000027889	Ampd2	1200014F01Rik|AI552571|Ampd-2|m4521Dajl	adenosine monophosphate deaminase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-10145232-2	chr8	10145132	10145332	+	717.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8679.0	NM_001319151	244281.0	Mm.422761	NM_001081397	ENSMUSG00000039057	Myo16	BM140241|C230040D10Rik|Gm1105|NYAP3|mKIAA0865	myosin XVI	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-138061905-2	chr1	138061805	138062005	+	571.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_011210)	TTS (NM_011210)	95266.0	NR_029820	723890.0		NR_029820	ENSMUSG00000065458	Mir181b-1	Mirn181b-1|mir-181b-1	microRNA 181b-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-108349513-2	chr9	108349413	108349613	+	562.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011678, intron 1 of 21)	B1_Mus1|SINE|Alu	1682.0	NM_011678	22258.0	Mm.3974	NM_011678	ENSMUSG00000032612	Usp4	F730026I20Rik|Unp|mKIAA4155	ubiquitin specific peptidase 4 (proto-oncogene)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-40950475-2	chr14	40950375	40950575	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145928, intron 1 of 8)	intron (NM_145928, intron 1 of 8)	-2266.0	NM_001316748	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35265789-1	chr17	35265689	35265889	+	652.0	f0_balb.idr	exon (NM_010380, exon 4 of 8)	exon (NM_010380, exon 4 of 8)	2666.0	NM_001267808	14980.0	Mm.439675	NM_001267808		H2-L	H-2L	histocompatibility 2, D region locus L	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-125371623-4	chr10	125371509	125371709	+	917.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42646.0	NM_001358496	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-75924479-2	chr10	75924379	75924579	+	651.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008606, intron 7 of 7)	intron (NM_008606, intron 7 of 7)	-2865.0	NM_001161853	20587.0	Mm.279751	NM_011418	ENSMUSG00000000902	Smarcb1	AU020204|Baf47|Ini1|SNF5/INI1|Snf5	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19265025-2	chr7	19264925	19265125	+	797.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009499, intron 1 of 12)	ZP3AR|Satellite|Satellite	6829.0	NM_001282021	22323.0	Mm.9684	NM_009499	ENSMUSG00000030403	Vasp	-	vasodilator-stimulated phosphoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-36032641-3	chr12	36032567	36032767	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025359, intron 1 of 5)	intron (NM_025359, intron 1 of 5)	9811.0	NM_025359	66109.0	Mm.254663	NM_025359	ENSMUSG00000020577	Tspan13	1100001I23Rik|NET-6|Tm4sf13	tetraspanin 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-103250319-4	chr15	103250208	103250408	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302338, intron 2 of 2)	intron (NM_001302338, intron 2 of 2)	1368.0	NM_001302338	18022.0	Mm.457989	NM_008685	ENSMUSG00000058794	Nfe2	NF-E2|NF-E2/P45|p45|p45NFE2|p45nf-e2	nuclear factor, erythroid derived 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180768590-4	chr1	180768495	180768695	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42552.0	NM_133225	170760.0	Mm.272981	NM_133225	ENSMUSG00000026499	Acbd3	60kDa|8430407O11Rik|D1Ertd10e|GCP60|GOLPH1|Gocap1|Pap7	acyl-Coenzyme A binding domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-62015927-3	chr13	62015806	62016006	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-113984.0	NM_001039239	630579.0	Mm.440905	NM_001039239	ENSMUSG00000074867	Zfp808	EG630579|Gm7036	zinc finger protein 808	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-116150445-6	chr4	116150352	116150552	+	999.9722289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290658)	promoter-TSS (NM_001290658)	-66.0	NM_029786	68273.0	Mm.196045	NM_026651	ENSMUSG00000028700	Pomgnt1	0610016I07Rik|4930467B06Rik	protein O-linked mannose beta 1,2-N-acetylglucosaminyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-134853409-4	chr4	134853284	134853484	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355501)	promoter-TSS (NM_001355501)	-39.0	NM_025382	66146.0	Mm.99793	NM_025382	ENSMUSG00000028826	Tmem57	1110007C24Rik|9230118A01Rik|AI317300|AI606104|C61|Maco1	transmembrane protein 57	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-120457309-3	chr6	120457217	120457417	+	859.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-5880.0	NM_008359	16172.0	Mm.4481	NM_008359	ENSMUSG00000002897	Il17ra	AW538159|Cdw217|Il17r|VDw217	interleukin 17 receptor A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-3361320-2	chr13	3361220	3361420	+	645.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-116983.0	NR_015522	76937.0	Mm.487240	NR_015522	ENSMUSG00000097709	2810429I04Rik	AI256682	RIKEN cDNA 2810429I04 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122440052-2	chr8	122439952	122440152	+	940.75	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_028354, exon 3 of 11)	non-coding (NR_028354, exon 3 of 11)	3370.0	NM_138656	192156.0	Mm.28146	NM_138656	ENSMUSG00000006517	Mvd	C78718|Mpd	mevalonate (diphospho) decarboxylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-11555974-4	chr8	11555871	11556071	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011919)	promoter-TSS (NM_011919)	-92.0	NM_001302457	26356.0	Mm.25709	NM_011919	ENSMUSG00000045969	Ing1	2610028J21Rik|AA407184|AI875420|mING1h|p33Ing1|p37Ing1b	inhibitor of growth family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-55308697-4	chr9	55308612	55308812	+	993.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-18201.0	NM_172923	244886.0	Mm.24361	NM_172923	ENSMUSG00000032313	Tmem266	9630029F15|AI118078|HVRP1	transmembrane protein 266	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-52875917-2	chr2	52875817	52876017	+	851.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	MIRb|SINE|MIR	18049.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-57374665-2	chr1	57374565	57374765	+	696.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_037999, intron 2 of 3)	intron (NR_037999, intron 2 of 3)	2879.0	NR_037999	75323.0	Mm.362968	NR_037999	ENSMUSG00000097519	4930558J18Rik	-	RIKEN cDNA 4930558J18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135185239-2	chr5	135185139	135185339	+	845.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	-2084.0	NM_011714	22385.0	Mm.40331	NM_011714	ENSMUSG00000002748	Baz1b	C87820|WSTF|Wbscr9	bromodomain adjacent to zinc finger domain, 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-22666153-4	chr11	22666022	22666222	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	153839.0	NM_153596	103765.0	Mm.221274	NM_153596	ENSMUSG00000049904	Tmem17	AI503894|AW049890	transmembrane protein 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26437510-5	chr17	26437370	26437570	+	951.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081656, intron 2 of 4)	intron (NM_001081656, intron 2 of 4)	22505.0	NM_001081656	240055.0	Mm.133211	NM_001081656	ENSMUSG00000034413	Neurl1b	C230078M08Rik|EG240055	neuralized E3 ubiquitin protein ligase 1B	protein-coding	2.77791037874879	2.65315198408807	2.03864512215719	3.77357109032749	2.89009061691793	3.24822313064338	1.53227492148317	3.5342736249773	0.024159071104585	0.976275292206533	0.998431161219273
Merged-chr8-79391656-1	chr8	79391556	79391756	+	724.0	f0_balb.idr	intron (NM_008539, intron 1 of 6)	intron (NM_008539, intron 1 of 6)	7812.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-32587768-1	chr4	32587668	32587868	+	1000.0	f1_balb.idr	Intergenic	Intergenic	14614.0	NM_010289	14610.0	Mm.377084	NM_010289	ENSMUSG00000051056	Gja10	Cx-57|Cx59|cx57	gap junction protein, alpha 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-165773299-2	chr1	165773199	165773399	+	839.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_149310, intron 4 of 4)	intron (NR_149310, intron 4 of 4)	9541.0	NM_011804	433375.0	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30219601-5	chr7	30219749	30219949	+	799.771423	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11542.0	NM_001360648	66411.0	Mm.27947	NM_025548	ENSMUSG00000006095	Tbcb	2410007D12Rik|AU041393|CG22|CKAPI|Ckap1	tubulin folding cofactor B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75460188-4	chr11	75460072	75460272	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1367.0	NR_030711	100042498.0	Mm.482242	NR_030711	ENSMUSG00000085148	Mir22hg	2210403K04Rik|mir-22	Mir22 host gene (non-protein coding)	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140605315-2	chr5	140605215	140605415	+	600.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2026.0	NM_008494	16848.0	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102283100-4	chr12	102282929	102283129	+	997.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161365)	promoter-TSS (NM_001161365)	-45.0	NM_177620	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-154823300-3	chr1	154823196	154823396	+	740.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-97376.0	NM_009782	12290.0	Mm.267517	NM_009782	ENSMUSG00000004110	Cacna1e	A430040I15|BII|Cach6|Cacnl1a6|Cav2.3|Cchra1|alpha1E	calcium channel, voltage-dependent, R type, alpha 1E subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-67039615-4	chr15	67039559	67039759	+	974.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70018.0	NM_008681	17988.0	Mm.30837	NM_008681	ENSMUSG00000005125	Ndrg1	CAP43|CMT4D|DRG1|HMSNL|NMSL|Ndr1|Ndrl|PROXY1|RTP|TDD5	N-myc downstream regulated gene 1	protein-coding	1.28194459533463	2.36826034127006	2.28186934589177	1.09994503991607	1.89907937128842	2.58292996539814	2.30126956881451	1.10411074384675	0.472926605552472	0.676592073629734	0.99440487726309
Merged-chr17-65853874-4	chr17	65853784	65853984	+	906.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198949, intron 7 of 9)	intron (NM_001198949, intron 7 of 9)	31039.0	NM_001198949	19765.0	Mm.17009	NM_009067	ENSMUSG00000024096	Ralbp1	RLIP76|Rip1	ralA binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-8505066-4	chr6	8504961	8505161	+	996.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	4100.0	NR_040452	320312.0	Mm.374890	NR_040452	ENSMUSG00000087305	A430035B10Rik	2810488G03Rik	RIKEN cDNA A430035B10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-66818106-4	chr10	66818021	66818221	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	102263.0	NR_138560	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-91717083-2	chr6	91716983	91717183	+	627.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009320, intron 2 of 14)	MIR3|SINE|MIR	33016.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-37136556-2	chr10	37136456	37136656	+	983.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008538, exon 2 of 2)	exon (NM_008538, exon 2 of 2)	2370.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-43466548-4	chr7	43466468	43466668	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001290316, exon 5 of 10)	exon (NM_001290316, exon 5 of 10)	3335.0	NM_001290316	75690.0	Mm.30200	NM_001290316	ENSMUSG00000070604	Vsig10l	-	V-set and immunoglobulin domain containing 10 like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70477526-1	chr8	70477426	70477626	+	1000.0	f1_c57bl6.idr	promoter-TSS (NM_001122830)	promoter-TSS (NM_001122830)	-583.0	NM_178771	234378.0	Mm.187090	NM_172052	ENSMUSG00000055707	Klhl26	C630013N10Rik|Klkl26	kelch-like 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-102665692-2	chr15	102665592	102665792	+	847.599976	f1_balb.idr|f1_c57bl6.idr	intron (NM_026468, intron 3 of 4)	intron (NM_026468, intron 3 of 4)	5355.0	NM_026468	67942.0	Mm.10314	NM_026468	ENSMUSG00000062683	Atp5g2	1810041M08Rik	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C2 (subunit 9)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-6169654-4	chr7	6169581	6169781	+	999.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER91A|DNA|hAT-Tip100	-2832.0	NM_028316	72667.0	Mm.274089	NM_028316	ENSMUSG00000044876	Zfp444	2810031J10Rik|6230401O10Rik|mFLJ00134	zinc finger protein 444	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-4338280-2	chr18	4338180	4338380	+	635.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_007746, intron 5 of 7)	PB1D10|SINE|Alu	14673.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-21692956-4	chr16	21692834	21693034	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001881, intron 1 of 1)	RSINE1|SINE|B4	1731.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126703653-3	chr7	126703589	126703789	+	752.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009898, intron 1 of 10)	intron (NM_009898, intron 1 of 10)	531.0	NM_001301374	12721.0	Mm.290482	NM_009898	ENSMUSG00000030707	Coro1a	Clabp|Lmb3|TACO|p57	coronin, actin binding protein 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-131555995-2	chr7	131555895	131556095	+	796.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_145998, exon 2 of 2)	3' UTR (NM_145998, exon 2 of 2)	1933.0	NM_145998	15372.0	Mm.303357	NM_145998	ENSMUSG00000050100	Hmx2	Nkx-5.2|Nkx5-2	H6 homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-138033531-2	chr2	138033431	138033631	+	626.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-223053.0	NM_001025431	228662.0	Mm.153405	NM_145534	ENSMUSG00000062098	Btbd3	mKIAA0952	BTB (POZ) domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-83040250-7	chr15	83040161	83040361	+	981.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6864.0	NM_001271411	74039.0	Mm.32584	NM_028728	ENSMUSG00000058099	Nfam1	4921501M20Rik|Cnaip	Nfat activating molecule with ITAM motif 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98953487-2	chr11	98953387	98953587	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009024, intron 2 of 8)	intron (NM_009024, intron 2 of 8)	-6984.0	NM_001176528	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-77961547-4	chr9	77961499	77961699	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134255, intron 3 of 7)	intron (NM_134255, intron 3 of 7)	44234.0	NM_134255	68801.0	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-25024819-4	chr16	25024711	25024911	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-34828.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-10139535-4	chr14	10139466	10139666	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360141, intron 5 of 9)	intron (NM_001360141, intron 5 of 9)	255471.0	NR_030680	100042415.0	Mm.235938	NR_030680	ENSMUSG00000089686	Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-14246703-2	chr9	14246603	14246803	+	627.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29598.0	NM_030261	75747.0	Mm.325126	NM_030261	ENSMUSG00000032009	Sesn3	5630400E15Rik|BC003348|SEST3	sestrin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-103751616-2	chr13	103751516	103751716	+	862.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361085, intron 9 of 11)	intron (NM_001361085, intron 9 of 11)	12966.0	NM_172592	218543.0	Mm.458176	NM_172592	ENSMUSG00000032621	Srek1	8430401B01|AI450757|AI462342|SRrp508|SRrp86|Sfrs12|Srsf12	splicing regulatory glutamine/lysine-rich protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-70881120-4	chr6	70881033	70881233	+	928.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010121, intron 4 of 16)	intron (NM_010121, intron 4 of 16)	36618.0	NM_001313918	13666.0	Mm.247167	NM_010121	ENSMUSG00000031668	Eif2ak3	Pek|Perk	eukaryotic translation initiation factor 2 alpha kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-6452633-4	chr4	6452524	6452724	+	877.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010945, intron 1 of 30)	intron (NM_010945, intron 1 of 30)	1647.0	NM_010945	18201.0	Mm.3059	NM_010945	ENSMUSG00000028245	Nsmaf	AA959567|C630007J05|Fan	neutral sphingomyelinase (N-SMase) activation associated factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-153492730-3	chr1	153492650	153492850	+	607.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5090.0	NM_007842	13211.0	Mm.20000	NM_007842	ENSMUSG00000042699	Dhx9	AI326842|Ddx9|HEL-5|NDHII|RHA|mHEL-5	DEAH (Asp-Glu-Ala-His) box polypeptide 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-105159025-2	chr4	105158925	105159125	+	860.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_080555, intron 1 of 5)	intron (NM_080555, intron 1 of 5)	1678.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-94708468-4	chr9	94708368	94708568	+	988.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177909, intron 2 of 15)	intron (NM_177909, intron 2 of 15)	38576.0	NM_177909	331004.0	Mm.326125	NM_177909	ENSMUSG00000031129	Slc9a9	5730527A11Rik|9930105B05|AI854429|Nhe9	solute carrier family 9 (sodium/hydrogen exchanger), member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127165143-4	chr10	127165034	127165234	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008080)	promoter-TSS (NM_008080)	-22.0	NR_045166	14421.0	Mm.386762	NM_008080	ENSMUSG00000006731	B4galnt1	4933429D13Rik|Gal-NAc-T|GalNAc-T|GalNAcT|Galgt1|Ggm-2|Ggm2	beta-1,4-N-acetyl-galactosaminyl transferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-45261676-5	chr9	45261503	45261703	+	920.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_136903, intron 4 of 5)	intron (NR_136903, intron 4 of 5)	5104.0	NR_106054	102466803.0		NR_106054	ENSMUSG00000098361	Mir7086	Gm27643|mmu-mir-7086	microRNA 7086	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70131698-4	chr8	70131580	70131780	+	943.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011266, exon 9 of 9)	3' UTR (NM_011266, exon 9 of 9)	353.0	NM_001025587	75692.0	Mm.161167	NM_001025586	ENSMUSG00000071078	Nr2c2ap	2310073E15Rik	nuclear receptor 2C2-associated protein	protein-coding	3.78306980775039	3.37033086509973	3.73345605588749	3.06531065755804	3.85916300123952	3.49095892125139	3.18083433411241	2.57483118425641	-0.244507860538412	0.675763405113656	0.99440487726309
Merged-chr17-64621879-2	chr17	64621779	64621979	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008549, intron 1 of 21)	Tigger10|DNA|TcMar-Tigger	20230.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135773272-3	chr5	135773165	135773365	+	794.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029659, intron 1 of 8)	intron (NM_029659, intron 1 of 8)	5036.0	NM_001289554	76571.0	Mm.247666	NM_029659	ENSMUSG00000019178	Styxl1	1700011C14Rik|Dusp24|Mkstyx	serine/threonine/tyrosine interacting-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-31221720-4	chr6	31221627	31221827	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040260, intron 1 of 5)	intron (NR_040260, intron 1 of 5)	1376.0	NR_040259	73652.0	Mm.441297	NR_040257	ENSMUSG00000087380	2210408F21Rik	-	RIKEN cDNA 2210408F21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-36814725-4	chr5	36814626	36814826	+	994.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008550, intron 11 of 18)	intron (NM_008550, intron 11 of 18)	15923.0	NM_008550	17160.0	Mm.761	NM_008550	ENSMUSG00000029119	Man2b2	mKIAA0935	mannosidase 2, alpha B2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-14130980-3	chr16	14130868	14131068	+	906.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081154, intron 16 of 26)	intron (NM_001081154, intron 16 of 26)	28306.0	NM_001081154	223989.0	Mm.85442	NM_001081154	ENSMUSG00000060657	Marf1	4921513D23Rik|BC031575|C87306|E030019O05|Lkap|mKIAA0430	meiosis regulator and mRNA stability 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-92939262-3	chr13	92939165	92939365	+	985.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	94478.0	NM_001162945	382793.0	Mm.296770	NM_001162945	ENSMUSG00000021704	Mtx3	4930470O13Rik|AA409304|AI853833|AU067765|EG624619|Gm1194|Gm6514	metaxin 3	protein-coding	1.8279579264546	1.41503150857363	1.90308424953466	2.02803350375875	0.903186523054771	0.966498121658057	2.02106383594731	0.929070032742142	-1.55714236273277	0.232614201777791	0.727877916220547
Merged-chr11-44378730-2	chr11	44378693	44378893	+	601.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21270.0	NM_001303244	16160.0	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-78859025-4	chr12	78858908	78859108	+	770.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023721, intron 1 of 8)	(A)n|Simple_repeat|Simple_repeat	2630.0	NM_023721	73834.0	Mm.311549	NM_023721	ENSMUSG00000021114	Atp6v1d	1110004P10Rik|Atp6m|VATD|Vma8	ATPase, H+ transporting, lysosomal V1 subunit D	protein-coding	2.71366100798918	3.40703863261041	3.04377532283843	3.12838723798008	3.43544908968895	2.18186046280567	1.87986731441127	3.14427495339911	-0.445702215369829	0.542512725349326	0.954935047166076
Merged-chr12-25054751-3	chr12	25054629	25054829	+	929.388855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081378, intron 31 of 31)	intron (NM_001081378, intron 31 of 31)	41363.0	NM_010496	15902.0	Mm.34871	NM_010496	ENSMUSG00000020644	Id2	AI255428|C78922|Idb2|bHLHb26	inhibitor of DNA binding 2	protein-coding	3.89420642760034	4.61331167055522	3.40459807644011	4.13698519314054	1.73186023857795	1.41208752634642	1.34379399452506	1.59672538816915	-5.11454682064222	1.99548204454993e-07	1.61043454510157e-05
Merged-chr3-13473124-4	chr3	13473041	13473241	+	866.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001357036, exon 1 of 9)	5' UTR (NM_001357036, exon 1 of 9)	342.0	NM_001357036	76897.0	Mm.422625	NM_178631	ENSMUSG00000039717	Ralyl	0710005M24Rik	RALY RNA binding protein-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120103053-4	chr8	120102927	120103127	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1555.0	NM_133967	102193.0	Mm.240076	NM_133967	ENSMUSG00000031823	Zdhhc7	AL024087|Gramp2	zinc finger, DHHC domain containing 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-142618866-4	chr3	142618759	142618959	+	948.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010259, exon 11 of 11)	3' UTR (NM_010259, exon 11 of 11)	-1804.0	NM_010260	14469.0	Mm.24038	NM_010260	ENSMUSG00000028270	Gbp2	-	guanylate binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-9255241-3	chr13	9255110	9255310	+	962.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	-21315.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-34175628-2	chr2	34175528	34175728	+	754.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290576, intron 7 of 7)	intron (NM_001290576, intron 7 of 7)	-67893.0	NR_130173	329387.0	Mm.125817	NR_130173	ENSMUSG00000087461	C230014O12Rik	-	RIKEN cDNA C230014O12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-148155225-2	chr4	148155125	148155325	+	856.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355701, intron 5 of 5)	intron (NM_001355701, intron 5 of 5)	-3090.0	NM_001163707	50762.0	Mm.27445	NM_015797	ENSMUSG00000055401	Fbxo6	AA408845|FBG2|Fbs2|Fbx6b|Fbxo6b	F-box protein 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-85942071-2	chr11	85941971	85942171	+	718.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45306.0	NM_172798	21387.0	Mm.275336	NM_011536	ENSMUSG00000000094	Tbx4	3930401C23	T-box 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-82462181-4	chr18	82462073	82462273	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CAG)n|Simple_repeat|Simple_repeat	-12950.0	NM_001025245	17196.0	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-96675637-4	chr9	96675543	96675743	+	963.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43802.0	NM_001359960	245007.0	Mm.485954	NM_175537	ENSMUSG00000040433	Zbtb38	A930014K01Rik|CIBZ	zinc finger and BTB domain containing 38	protein-coding	1.43014914309397	1.98057914276606	1.28102532513075	2.61471674357545	2.33842962131239	1.99517029197279	2.54023131385308	2.62846275082121	1.04914802977939	0.281210343256993	0.78400185225177
Merged-chr3-27632150-2	chr3	27632050	27632250	+	780.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356953, intron 3 of 26)	B4A|SINE|B4	-47155.0	NR_037275	100526525.0		NR_037275	ENSMUSG00000092695	Mir3092	mir-3092|mmu-mir-3092	microRNA 3092	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5952184-4	chr19	5952085	5952285	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164057, intron 7 of 17)	intron (NM_001164057, intron 7 of 17)	12021.0	NM_001164057	18969.0	Mm.209931	NM_008893	ENSMUSG00000024833	Pola2	AI573378	polymerase (DNA directed), alpha 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-34057887-2	chr11	34057787	34057987	+	800.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010696, intron 3 of 20)	L1MEc|LINE|L1	10959.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-69185329-3	chr3	69185221	69185421	+	935.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37098.0	NM_027843	71619.0	Mm.98122	NM_027843	ENSMUSG00000098207	Arl14	9130014L17Rik|Arf7	ADP-ribosylation factor-like 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-33812946-2	chr1	33812846	33813046	+	774.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359274, intron 2 of 13)	intron (NM_001359274, intron 2 of 13)	1649.0	NM_133817	98403.0	Mm.289103	NM_133817	ENSMUSG00000042197	Zfp451	4930515K21Rik|4933435G09Rik|AI596398|COASTER|Kiaa0576-hp|Znf451|mKIAA1702	zinc finger protein 451	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-86747343-2	chr11	86747243	86747443	+	571.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001003908, intron 1 of 31)	intron (NM_001003908, intron 1 of 31)	10224.0	NM_001003908	67300.0	Mm.254588	NM_001003908	ENSMUSG00000047126	Cltc	3110065L21Rik|CHC|R74732	clathrin, heavy polypeptide (Hc)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-75835709-4	chr3	75835594	75835794	+	976.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	121255.0	NM_175193	73124.0	Mm.249232	NM_175193	ENSMUSG00000034109	Golim4	3110027H23Rik|GIMPC|GPP130|Golph4|P138	golgi integral membrane protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-17890885-2	chr16	17890785	17890985	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001109750, intron 1 of 9)	intron (NM_001109750, intron 1 of 9)	843.0	NM_010048	13356.0	Mm.254515	NM_010048	ENSMUSG00000003166	Dgcr2	9930034O06Rik|DGS-C|Dgsc|Idd|Lan|Sez12|mKIAA0163	DiGeorge syndrome critical region gene 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-48516116-4	chr13	48516014	48516214	+	943.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2678.0	NM_001164576	67911.0	Mm.251375	NM_026450	ENSMUSG00000050954	Zfp169	1700025J14Rik|4930429A13Rik|BE688704	zinc finger protein 169	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34584897-2	chr17	34584797	34584997	+	644.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010929, intron 25 of 29)	(TG)n|Simple_repeat|Simple_repeat	-4909.0	NM_134116	106512.0	Mm.26584	NM_134116	ENSMUSG00000034786	Gpsm3	AA960287|AGS4	G-protein signalling modulator 3 (AGS3-like, C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-53252742-2	chr19	53252642	53252842	+	902.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_036590, intron 1 of 2)	intron (NR_036590, intron 1 of 2)	2463.0	NR_036590	69319.0	Mm.57452	NR_036590		1700001K23Rik	-	RIKEN cDNA 1700001K23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128495114-2	chr10	128495014	128495214	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_172259, exon 5 of 7)	exon (NM_172259, exon 5 of 7)	-1228.0	NM_010860	17904.0	Mm.337074	NM_010860	ENSMUSG00000090841	Myl6	ESMLC|LC17|LC17-GI|MLC-3|MLC1SM|Myln	myosin, light polypeptide 6, alkali, smooth muscle and non-muscle	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-30856144-4	chr6	30856041	30856241	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149738, intron 10 of 24)	ORR1B1|LTR|ERVL-MaLR	40653.0	NR_149738	54160.0	Mm.39896	NM_017478	ENSMUSG00000025607	Copg2	AW227625|gamma-2-COP	coatomer protein complex, subunit gamma 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-65608951-4	chr17	65608848	65609048	+	972.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355402, intron 1 of 6)	Lx8|LINE|L1	4607.0	NM_001355402	30960.0	Mm.266767	NM_013933	ENSMUSG00000024091	Vapa	33kDa|VAP33	vesicle-associated membrane protein, associated protein A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-62166316-2	chr18	62166216	62166416	+	729.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13665.0	NM_007420	11555.0	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171238667-3	chr1	171238571	171238771	+	876.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153064, intron 5 of 12)	intron (NM_153064, intron 5 of 12)	-4322.0	NM_010185	14127.0	Mm.22673	NM_010185	ENSMUSG00000058715	Fcer1g	AI573376|CD23|FcR-gamma|FcR[g]|FcRgamma|Fce1g|FcepsilonRI|Ly-50	Fc receptor, IgE, high affinity I, gamma polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97942578-4	chr11	97942491	97942691	+	973.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163608, intron 7 of 13)	intron (NM_001163608, intron 7 of 13)	43855.0	NM_028199	72324.0	Mm.39617	NM_028199	ENSMUSG00000017417	Plxdc1	2410003I07Rik|AI848450|Tem7	plexin domain containing 1	protein-coding	4.63213195701098	4.29234143316868	4.90155298435568	4.61842445684037	4.73561127730299	4.82895017105746	4.72887540880892	4.35343264057087	0.0501960157018359	0.888385822268963	0.998431161219273
Merged-chr3-116808755-4	chr3	116808668	116808868	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081326)	promoter-TSS (NM_001081326)	-602.0	NM_001081326	77559.0	Mm.237099	NM_001081326	ENSMUSG00000033400	Agl	1110061O17Rik|9430004C13Rik|9630046L06Rik|AI850929|C77197	amylo-1,6-glucosidase, 4-alpha-glucanotransferase	protein-coding	5.37916975859742	5.32755872574192	5.10142446811447	5.1097017204685	5.12170097941418	4.65470928071707	4.66751624433484	5.63806797317529	-0.169355873118002	0.605330748612702	0.974576632476413
Merged-chr12-17012204-2	chr12	17012102	17012302	+	833.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001201332)	promoter-TSS (NM_001201332)	-475.0	NM_001201333	73667.0	Mm.159048	NM_001201332	ENSMUSG00000071398	2410004P03Rik	-	RIKEN cDNA 2410004P03 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-91735796-4	chr12	91735688	91735888	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 3 of 6)	intron (NM_175367, intron 3 of 6)	50648.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-23762451-2	chr1	23762351	23762551	+	615.5	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_172124, exon 1 of 4)	5' UTR (NM_172124, exon 1 of 4)	525.0	NM_172124	280645.0	Mm.471661	NM_172124	ENSMUSG00000026156	B3gat2	GlcAT-S|Glcats	beta-1,3-glucuronyltransferase 2 (glucuronosyltransferase S)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-100707502-2	chr5	100707402	100707602	+	733.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_152803, intron 3 of 11)	Lx8b|LINE|L1	12214.0	NM_152803	15442.0	Mm.265786	NM_152803	ENSMUSG00000035273	Hpse	HSE1|Hpa|Hpr1	heparanase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-29043020-4	chr7	29042907	29043107	+	750.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009109, intron 84 of 105)	intron (NM_009109, intron 84 of 105)	40687.0	NR_035489	100316710.0		NR_035489	ENSMUSG00000089219	Mir1963	mir-1963|mmu-mir-1963	microRNA 1963	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-38219501-1	chr5	38219401	38219601	+	895.0	f1_balb.idr	promoter-TSS (NM_025281)	promoter-TSS (NM_025281)	953.0	NM_029162	75079.0	Mm.258741	NM_029162	ENSMUSG00000029127	Zbtb49	4930518A03Rik|Zfp509|Znf509	zinc finger and BTB domain containing 49	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-115150072-4	chr13	115149969	115150169	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48105.0	NM_001033228	109700.0	Mm.317280	NM_001033228	ENSMUSG00000042284	Itga1	CD49A|E130012M19Rik|Vla1	integrin alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-156660822-3	chr1	156660721	156660921	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023141, intron 4 of 5)	ERVB7_1-LTR_MM|LTR|ERVK	13518.0	NM_023141	30935.0	Mm.206737	NM_023141	ENSMUSG00000060519	Tor3a	Adir	torsin family 3, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-5363200-4	chr6	5363089	5363289	+	892.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-20197.0	NM_023048	65255.0	Mm.51340	NM_023048	ENSMUSG00000042607	Asb4	8430401O13Rik|AV117194|AW060255	ankyrin repeat and SOCS box-containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-34696956-4	chr12	34696831	34697031	+	992.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271386, intron 3 of 27)	intron (NM_001271386, intron 3 of 27)	-168042.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	3.21590736815505	3.23155529707481	3.69594171712307	3.8299009489785	3.2424447920651	3.35885918268536	2.26317404230057	3.47835793796831	-0.567831256798075	0.342547181100253	0.843489544525844
Merged-chr7-73595992-3	chr7	73595898	73596098	+	838.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-37603.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-99516401-1	chr5	99516301	99516501	+	967.0	f0_balb.idr	intron (NR_030692, intron 2 of 3)	MTD|LTR|ERVL-MaLR	212659.0	NR_030692	319818.0	Mm.295233	NR_030692	ENSMUSG00000089809	A930011G23Rik	-	RIKEN cDNA A930011G23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-82568486-2	chr11	82568386	82568586	+	688.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64867.0	NR_033582	791422.0	Mm.341562	NR_033582	ENSMUSG00000069796	Gm11426	-	predicted gene 11426	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-63193741-7	chr14	63193586	63193786	+	995.9428710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_201610)	promoter-TSS (NM_201610)	-161.0	NM_201610	382913.0	Mm.239490	NM_201610	ENSMUSG00000035121	Neil2	Gm1212|NEH2	nei like 2 (E. coli)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-9991469-4	chr19	9991349	9991549	+	924.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011913, intron 6 of 11)	ID_B1|SINE|B4	8803.0	NM_010239	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	3.18609107501265	2.30659943059994	2.78412706939848	3.72136518394977	2.8606597364684	1.59293661986661	2.91350380160173	2.60334069310435	-0.937355430592325	0.224598391070523	0.716302896348785
Merged-chr2-31726930-4	chr2	31726832	31727032	+	892.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001283047, intron 2 of 11)	intron (NM_001283047, intron 2 of 11)	-33007.0	NM_009594	11350.0	Mm.1318	NM_009594	ENSMUSG00000026842	Abl1	AI325092|Abl|E430008G22Rik|c-Abl	c-abl oncogene 1, non-receptor tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-25471321-2	chr18	25471221	25471421	+	543.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	208427.0	NM_001362337	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-33889289-1	chr17	33889189	33889389	+	557.0	f1_balb.idr	intron (NM_001195298, intron 1 of 10)	intron (NM_001195298, intron 1 of 10)	1344.0	NM_001195298	100502766.0	Mm.335713	NM_001195298	ENSMUSG00000079553	Kifc1	100042970|Gm4137|HSET|KNSL2|Kifc5a|Knsl2a|Tctex-7|Tctex-7A|Tctex7|Tctex7a	kinesin family member C1	protein-coding	1.14142303512161	2.63673140124065	2.13068729887864	2.06779646840217	1.37161651240504	2.46225030055575	2.47439485438325	1.63304883879412	-0.0525086334661802	0.959770471526782	0.998431161219273
Merged-chr2-27071358-4	chr2	27071268	27071468	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025376, intron 1 of 4)	intron (NM_025376, intron 1 of 4)	793.0	NM_025376	66139.0	Mm.330087	NM_025376	ENSMUSG00000009214	Mymk	1110002H13Rik|AI131587|Tmem8c|myomaker	myomaker, myoblast fusion factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-35099117-4	chr9	35098947	35099147	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009178, intron 1 of 10)	intron (NM_009178, intron 1 of 10)	-17681.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	3.53087147475978	1.67408134817154	1.60629372218044	1.79301594288219	3.06801361534193	4.01845826932103	1.31352548518214	2.91305933018837	1.13205118832167	0.236343066997305	0.7331006782763
Merged-chr16-56074578-2	chr16	56074478	56074678	+	837.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025483)	promoter-TSS (NM_025483)	-826.0	NM_025483	66315.0	Mm.255784	NM_025483	ENSMUSG00000052917	Senp7	2410152H17Rik|2810413I22Rik|2900036C23Rik|6030449K19Rik|AI790676	SUMO1/sentrin specific peptidase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-13860076-4	chr6	13859977	13860177	+	998.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11441.0	NM_001352887	66520.0	Mm.29615	NM_183258		2610001J05Rik	C79299	RIKEN cDNA 2610001J05 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139462996-2	chr5	139462896	139463096	+	579.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2462.0	NM_028469	73212.0	Mm.84294	NM_028469	ENSMUSG00000053553	3110082I17Rik	AW411904	RIKEN cDNA 3110082I17 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65542399-4	chr9	65542278	65542478	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA4|LINE|L1	37709.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-25983189-2	chr15	25983089	25983289	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1177.0	NM_144523	52521.0	Mm.29145	NM_144523	ENSMUSG00000052253	Zfp622	1110033B05Rik|D15Ertd806e|ZPR9|Znf622	zinc finger protein 622	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-50244658-4	chr11	50244548	50244748	+	810.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6116.0	NR_132733	17001.0	Mm.245151	NM_008521	ENSMUSG00000020377	Ltc4s	-	leukotriene C4 synthase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-132689410-4	chr2	132689314	132689514	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358261)	promoter-TSS (NM_001358261)	-743.0	NM_001358261	73747.0	Mm.284114	NM_028637	ENSMUSG00000044991	1110034G24Rik	-	RIKEN cDNA 1110034G24 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115066949-4	chr11	115066850	115067050	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4911.0	NM_172050	217306.0	Mm.222667	NM_172050	ENSMUSG00000048498	Cd300e	BC034097|CLM2|Cd300le|TREM5	CD300E molecule	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-98831010-2	chr10	98830910	98831110	+	845.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-83632.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-74486191-2	chr11	74486091	74486291	+	592.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001015046, intron 2 of 24)	intron (NM_001015046, intron 2 of 24)	103967.0	NM_001015046	380711.0	Mm.425690	NM_001015046	ENSMUSG00000038807	Rap1gap2	AU067654|Garnl4|Gm1561|mKIAA1039	RAP1 GTPase activating protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88332714-2	chr3	88332614	88332814	+	553.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_024246, intron 2 of 3)	intron (NM_024246, intron 2 of 3)	1719.0	NM_024246	71913.0	Mm.34256	NM_024246	ENSMUSG00000001420	Tmem79	2310042N02Rik|2310074C17Rik|Matt|ma	transmembrane protein 79	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-22962256-4	chr8	22962164	22962364	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12572.0	NM_001110783	11733.0	Mm.334444	NM_031158	ENSMUSG00000031543	Ank1	Ank-1|nb|pale	ankyrin 1, erythroid	protein-coding	1.53207898942693	1.01237535138222	1.5335232396521	1.34838737939573	1.82851269846342	2.07027312356736	1.39368112217954	1.35462375032711	1.1226475204399	0.332433378769755	0.833345452772687
Merged-chr1-189023212-2	chr1	189023112	189023312	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15372.0	NR_153196	226823.0	Mm.209880	NM_172650	ENSMUSG00000026608	Kctd3	4930438A20Rik|9330185B06|E330032J19Rik|NY-REN-45	potassium channel tetramerisation domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-23896802-4	chr18	23896714	23896914	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57874.0	NM_027007	69256.0	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-124643669-3	chr2	124643589	124643789	+	868.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291000, intron 1 of 18)	intron (NM_001291000, intron 1 of 18)	-9892.0	NM_199240	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-10318991-4	chr10	10318917	10319117	+	873.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	153297.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-97137952-4	chr13	97137847	97138047	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271464)	promoter-TSS (NM_001271464)	10.0	NM_001271464	320806.0	Mm.219675	NM_177266	ENSMUSG00000021666	Gfm2	6530419G12Rik|A930009M04Rik|EF-G2mt|EFG2|MST027|RRF2mt	G elongation factor, mitochondrial 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-91970095-2	chr1	91970025	91970225	+	817.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_207225, intron 15 of 26)	intron (NM_207225, intron 15 of 26)	168664.0	NM_007855	13345.0	Mm.9474	NM_007855	ENSMUSG00000007805	Twist2	Dermo1|bHLHa39	twist basic helix-loop-helix transcription factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-40702663-4	chr19	40702529	40702729	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009848, intron 1 of 9)	intron (NM_009848, intron 1 of 9)	42859.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-38348469-4	chr16	38348356	38348556	+	868.587524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001017429, intron 1 of 2)	intron (NM_001017429, intron 1 of 2)	1457.0	NM_001017429	12856.0	Mm.27396	NM_001017429	ENSMUSG00000046516	Cox17	AI037035	cytochrome c oxidase assembly protein 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-63504086-3	chr2	63503979	63504179	+	857.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	71209.0	NR_152174	667257.0	Mm.417007	NR_152174		Gm8541	EG667257	predicted gene 8541	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-34292533-2	chr6	34292433	34292633	+	565.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24910.0	NR_037965	626009.0	Mm.451	NR_028277		Gm6644	Akr1b3p|EG626009	Akr1b3 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-112917732-1	chr12	112917632	112917832	+	625.0	f0_balb.idr	intron (NM_010588, intron 5 of 25)	intron (NM_010588, intron 5 of 25)	2809.0	NR_105906	102465567.0		NR_105906	ENSMUSG00000098338	Mir6941	Gm27923|mmu-mir-6941	microRNA 6941	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-53875103-2	chr11	53875003	53875203	+	819.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_011396, exon 4 of 10)	exon (NM_011396, exon 4 of 10)	-15847.0	NR_033332	622459.0	Mm.479656	NR_033332	ENSMUSG00000081769	Gm12216	602-19-115	predicted gene 12216	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-9466433-3	chr3	9466337	9466537	+	943.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133218, intron 4 of 8)	intron (NM_133218, intron 4 of 8)	63359.0	NR_015499	320088.0	Mm.212908	NR_015499	ENSMUSG00000097365	C030034L19Rik	A130044O20Rik	RIKEN cDNA C030034L19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-101074527-4	chr9	101074435	101074635	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001100451)	promoter-TSS (NM_001100451)	-227.0	NM_001100451	77853.0	Mm.326206	NM_001100451	ENSMUSG00000066415	Msl2	E130103E02Rik|Msl2l1|Rnf184	MSL complex subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10486574-3	chr19	10486473	10486673	+	780.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3676.0	NM_133689	67752.0	Mm.25939	NM_133689	ENSMUSG00000035179	Ppp1r32	4930579J09Rik|AU015816|IIIG9|IIIG9L|IIIG9S	protein phosphatase 1, regulatory subunit 32	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76701449-4	chr15	76701341	76701541	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027122)	promoter-TSS (NM_027122)	-101.0	NM_027122	69572.0	Mm.34920	NM_027122	ENSMUSG00000019080	Mfsd3	2310010G13Rik	major facilitator superfamily domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-57591777-4	chr18	57591684	57591884	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029290, intron 3 of 6)	intron (NM_029290, intron 3 of 6)	-39387.0	NR_015494	75084.0	Mm.243841	NR_015494	ENSMUSG00000086607	4930511M06Rik	-	RIKEN cDNA 4930511M06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180874222-4	chr1	180874122	180874322	+	914.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18886.0	NM_177099	320202.0	Mm.87078	NM_177099	ENSMUSG00000066652	Lefty2	6030463A22Rik|Ebaf|Lefta|Leftb|lefty-2|lefty-B	left-right determination factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76872491-2	chr15	76872351	76872551	+	675.125	f0_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1016.0	NM_001007568	71591.0	Mm.38195	NM_001007568	ENSMUSG00000022526	Zfp251	9130001M19Rik|AV339307	zinc finger protein 251	protein-coding	3.87402059535299	2.8114678107947	3.35460194750167	2.76282676355227	3.81854505089517	2.97074072256124	2.41422571400838	3.35713053395021	-0.0665442973881877	0.919100548543658	0.998431161219273
Merged-chr1-46854685-2	chr1	46854585	46854785	+	980.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356417, intron 2 of 10)	intron (NM_001356417, intron 2 of 10)	-1067.0	NM_172653	227059.0	Mm.233889	NM_172653	ENSMUSG00000025986	Slc39a10	2900042E17Rik|5430433I10|Zip10|mKIAA1265	solute carrier family 39 (zinc transporter), member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-4597177-2	chr7	4597077	4597277	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_207270, intron 5 of 19)	intron (NM_207270, intron 5 of 19)	6864.0	NM_207270	545902.0	Mm.188925	NM_207270	ENSMUSG00000035429	Ptprh	R-PTP-H|sap-1	protein tyrosine phosphatase, receptor type, H	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-83647554-2	chr17	83647454	83647654	+	748.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	-15659.0	NM_153512	225030.0	Mm.223506	NM_153512	ENSMUSG00000045053	Kcng3	KV6.3|Kv10.1a|Kv10.1b	potassium voltage-gated channel, subfamily G, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102461307-3	chr12	102461151	102461351	+	915.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7883.0	NM_001199004	27277.0	Mm.273370	NM_013747	ENSMUSG00000021192	Golga5	Ret-II	golgi autoantigen, golgin subfamily a, 5	protein-coding	2.13791449140857	1.50896645594942	3.18854563145682	2.75403254101496	2.80844917527426	2.9612305750424	1.98686909715813	3.69086933502698	0.824127097916009	0.323507346406324	0.826307367765344
Merged-chr13-60682951-3	chr13	60682853	60683053	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	80742.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	1.6036243025422	2.72147228669406	3.535513534734	2.76825242641734	2.7362170298828	3.6189477954864	1.99661444504274	2.28645745727866	-0.0237426017240969	0.97713120357311	0.998431161219273
Merged-chr14-29980647-3	chr14	29980565	29980765	+	783.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027493, intron 1 of 12)	intron (NM_027493, intron 1 of 12)	2328.0	NM_027493	56249.0	Mm.215110	NM_027493	ENSMUSG00000015971	Actr8	5730542K05Rik|ARP8	ARP8 actin-related protein 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-151108620-4	chr4	151108524	151108724	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081557, intron 11 of 23)	CpG	19054.0	NM_001308446	105704528.0	Mm.415128	NM_001308446	ENSMUSG00000078491	Gm13090	-	predicted gene 13090	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-63825586-2	chr5	63825486	63825686	+	542.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029554, intron 1 of 3)	B4A|SINE|B4	13091.0	NM_029554	76261.0	Mm.38143	NM_029554	ENSMUSG00000060512	0610040J01Rik	AI662686	RIKEN cDNA 0610040J01 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-167242447-2	chr1	167242347	167242547	+	818.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030724, intron 1 of 6)	MIR|SINE|MIR	42680.0	NM_030724	80914.0	Mm.280895	NM_030724	ENSMUSG00000026558	Uck2	AA407809|AI481316|AU018180|AU020720|TSA903|UK|UMK|Umpk	uridine-cytidine kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-57610710-5	chr19	57610518	57610718	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181415)	promoter-TSS (NM_181415)	-416.0	NM_181415	226255.0	Mm.245340	NM_181415	ENSMUSG00000054843	Atrnl1	AI504415|AW555641|Alp|Atrnl|Atrnlp	attractin like 1	protein-coding	5.03807599118469	5.30215808225299	4.94812210426745	5.44395341905368	6.17098108716647	5.37279669844075	5.85475232524822	5.41376837312465	0.633724161697499	0.0321869196626949	0.249254730279484
Merged-chr8-95428357-4	chr8	95428258	95428458	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008187, intron 1 of 5)	intron (NM_008187, intron 1 of 5)	6511.0	NM_008187	14894.0	Mm.2080	NM_008187	ENSMUSG00000031796	Cfap20	2600014O15Rik|AL024127|Gtl3|T10-2A2	cilia and flagella associated protein 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-37849008-4	chr18	37848891	37849091	+	998.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007858, intron 26 of 26)	intron (NM_007858, intron 26 of 26)	5669.0	NR_105945	102465592.0		NR_105945	ENSMUSG00000098706	Mir6979	Gm27524|mmu-mir-6979	microRNA 6979	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141766990-4	chr4	141766926	141767126	+	991.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172338, intron 11 of 14)	intron (NM_172338, intron 11 of 14)	20351.0	NM_001081408	75986.0	Mm.30032	NM_001081408	ENSMUSG00000040706	Agmat	5033405N08Rik	agmatine ureohydrolase (agmatinase)	protein-coding	4.78521707614115	4.46879959140786	5.09894853342897	4.02052420734564	4.88079448515011	4.81527022380892	4.09900124438658	4.39239021783601	-0.0824934039784025	0.835504160779155	0.998431161219273
Merged-chr1-7111587-3	chr1	7111437	7111637	+	878.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183028, intron 1 of 5)	intron (NM_183028, intron 1 of 5)	22617.0	NM_183028	319263.0	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-51915171-1	chr1	51915071	51915271	+	580.0	f1_c57bl6.idr	intron (NM_010863, intron 1 of 29)	intron (NM_010863, intron 1 of 29)	807.0	NM_001161817	17912.0	Mm.3390	NM_010863	ENSMUSG00000018417	Myo1b	AA406997|MIH-L|MMIa	myosin IB	protein-coding	1.76003043246402	0.705191776491624	1.50142117312159	0.679020029720599	0.662360007043826	1.45669470574331	1.51628053478668	0.681049023197848	-0.39370092237272	0.803667056073467	0.998431161219273
Merged-chr9-119395106-3	chr9	119395006	119395206	+	982.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7072.0	NM_007397	11481.0	Mm.8940	NM_007397	ENSMUSG00000061393	Acvr2b	4930516B21Rik|ActRIIB	activin receptor IIB	protein-coding	-1.53362919331644	-1.50201671710775	-1.51157659084044	-1.08120497225282	-1.53141005593807	-1.49994505258991	-1.50941244497383	-1.51802371459528	-1.94474658522739	0.577200604274218	1
Merged-chr3-135438220-4	chr3	135438156	135438356	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025356)	promoter-TSS (NM_025356)	24.0	NM_001356594	66105.0	Mm.49884	NM_025356	ENSMUSG00000078578	Ube2d3	1100001F19Rik|9430029A22Rik|AA414951	ubiquitin-conjugating enzyme E2D 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-104067073-2	chr12	104066975	104067175	+	666.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10884.0	NR_002861	321018.0	Mm.297023	NR_002861		Serpina4-ps1	KALps|Klst	serine (or cysteine) peptidase inhibitor, clade A, member 4, pseudogene 1	pseudo	0.550089049727455	0.913167154196209	0.597327920127334	0.418828533940882	1.05165385882585	0.785467809053778	0.602350426158961	0.582774028444279	0.850078723945888	0.591243045853299	1
Merged-chr19-44407916-4	chr19	44407816	44408016	+	979.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009127)	promoter-TSS (NM_009127)	-207.0	NM_009127	20249.0	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-135431305-2	chr3	135431205	135431405	+	827.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6927.0	NM_001356594	66105.0	Mm.49884	NM_025356	ENSMUSG00000078578	Ube2d3	1100001F19Rik|9430029A22Rik|AA414951	ubiquitin-conjugating enzyme E2D 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-77921513-3	chr9	77921407	77921607	+	687.944458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134255, intron 1 of 7)	intron (NM_134255, intron 1 of 7)	4142.0	NM_134255	68801.0	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-85035615-2	chr2	85035515	85035715	+	903.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_145526, exon 1 of 12)	5' UTR (NM_145526, exon 1 of 12)	219.0	NM_145526	228139.0	Mm.440375	NM_145526	ENSMUSG00000027071	P2rx3	4930513E20Rik|P2X3	purinergic receptor P2X, ligand-gated ion channel, 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-121284984-3	chr5	121284894	121285094	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181421, intron 11 of 75)	intron (NM_181421, intron 11 of 75)	64775.0	NM_181421	269700.0	Mm.184589	NM_181421	ENSMUSG00000042744	Hectd4	A130010L24|AU042671|BC019639|EG545802|Gm15800|mKIAA0614	HECT domain E3 ubiquitin protein ligase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-34782697-2	chr6	34782597	34782797	+	643.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_178630, intron 2 of 18)	intron (NM_178630, intron 2 of 18)	2265.0	NM_001289656	76223.0	Mm.150047	NM_178630	ENSMUSG00000038836	Agbl3	2900053G10Rik|4930431N21Rik|6530406M24Rik|CCP3	ATP/GTP binding protein-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-24890635-4	chr7	24890538	24890738	+	904.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001360119)	TTS (NM_001360119)	5725.0	NM_001360115	20085.0	Mm.300281	NM_023133	ENSMUSG00000040952	Rps19	Dsk3	ribosomal protein S19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-55500253-3	chr15	55500160	55500360	+	821.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181277, intron 44 of 47)	intron (NM_181277, intron 44 of 47)	57052.0	NM_026759	68537.0	Mm.236795	NM_026759	ENSMUSG00000022370	Mrpl13	1110002D09Rik	mitochondrial ribosomal protein L13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-15829291-3	chr19	15829205	15829405	+	925.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	95317.0	NM_001205339	107272.0	Mm.289936	NM_177420	ENSMUSG00000024640	Psat1	D8Ertd814e|EPIP|PSA|Psat	phosphoserine aminotransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52914748-4	chr13	52914663	52914863	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016709, intron 3 of 9)	intron (NM_016709, intron 3 of 9)	14914.0	NM_016709	11992.0	Mm.252034	NM_016709	ENSMUSG00000021460	Auh	C77140|W91705	AU RNA binding protein/enoyl-coenzyme A hydratase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-13672916-2	chr8	13672816	13673016	+	825.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 1 of 23)	(CA)n|Simple_repeat|Simple_repeat	4671.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-104749180-2	chr12	104749080	104749280	+	712.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_148948, intron 1 of 26)	intron (NM_148948, intron 1 of 26)	2772.0	NM_148948	192119.0	Mm.21135	NM_148948	ENSMUSG00000041415	Dicer1	1110006F08Rik|D12Ertd7e|mKIAA0928	dicer 1, ribonuclease type III	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-110357730-4	chr5	110357626	110357826	+	743.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12996.0	NM_001310709	381667.0	Mm.332572	NM_001033459	ENSMUSG00000072754	Lrcol1	Clpsl3|Gm1679	leucine rich colipase-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-73211824-2	chr6	73211724	73211924	+	736.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164669, intron 2 of 76)	intron (NM_001164669, intron 2 of 76)	9807.0	NM_001164669	330355.0	Mm.333166	NM_001164669	ENSMUSG00000052861	Dnah6	9830168K20|A730004I20Rik|Dnahc6|mKIAA1697|mdhc6	dynein, axonemal, heavy chain 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-22411497-4	chr9	22411400	22411600	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026739)	promoter-TSS (NM_026739)	-11.0	NM_026739	68283.0	Mm.280669	NM_026739	ENSMUSG00000036411	9530077C05Rik	1110003N12Rik|mKIAA0895	RIKEN cDNA 9530077C05 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-179802658-2	chr1	179802558	179802758	+	543.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026375, intron 1 of 35)	ID4|SINE|ID	1357.0	NM_026375	226747.0	Mm.128165	NM_026375	ENSMUSG00000026491	Ahctf1	6230412P20Rik|AV011447|Elys	AT hook containing transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-16358935-4	chr16	16358731	16358931	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001276341)	promoter-TSS (NM_001276341)	200.0	NM_152816	74006.0	Mm.218820	NM_152816	ENSMUSG00000022789	Dnm1l	6330417M19Rik|AI450666|Dlp1|Dnmlp1|Drp1|python	dynamin 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-88306701-2	chr1	88306601	88306801	+	640.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134252)	promoter-TSS (NM_134252)	-11.0	NM_134252	171382.0	Mm.218753	NM_134252	ENSMUSG00000036251	Trpm8	CMR1|LTRPC6|LTrpC-6|TRPP8|Trp-p8	transient receptor potential cation channel, subfamily M, member 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105170545-4	chr8	105170453	105170653	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161457)	promoter-TSS (NM_001161457)	-121.0	NM_001161457	12400.0	Mm.2018	NM_022309	ENSMUSG00000031885	Cbfb	AI893578|PEA2|PEBP2b|Pebp2|Pebpb2	core binding factor beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3896691-2	chr12	3896591	3896791	+	736.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153743, intron 4 of 17)	intron (NM_153743, intron 4 of 17)	4947.0	NM_153743	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4882997-2	chr16	4882897	4883097	+	700.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-3103.0	NM_001357062	17237.0	Mm.291326	NM_029657	ENSMUSG00000022517	Mgrn1	2610042J20Rik|mKIAA0544|md|nc	mahogunin, ring finger 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-75279798-3	chr3	75279674	75279874	+	698.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-9696.0	NM_026460	67931.0	Mm.259446	NM_026460	ENSMUSG00000034139	Serpini2	Spi14	serine (or cysteine) peptidase inhibitor, clade I, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-124423768-4	chr9	124423672	124423872	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015516)	promoter-TSS (NR_015516)	-15.0	NR_102721	75135.0	Mm.476814	NR_015516		4930526I15Rik	1600027J15Rik	RIKEN cDNA 4930526I15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-57740869-4	chr14	57740763	57740963	+	882.783325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015771, intron 1 of 7)	intron (NM_015771, intron 1 of 7)	5260.0	NM_015771	50523.0	Mm.347899	NM_015771	ENSMUSG00000021959	Lats2	4932411G09Rik|AV277261|AW228608	large tumor suppressor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-8911771-3	chr5	8911625	8911825	+	643.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008830, intron 8 of 27)	intron (NM_008830, intron 8 of 27)	18004.0	NM_008830	18670.0	Mm.297825	NM_008830	ENSMUSG00000042476	Abcb4	Mdr2|Pgy-2|Pgy2|mdr-2	ATP-binding cassette, sub-family B (MDR/TAP), member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-100039564-4	chr15	100039444	100039644	+	887.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159361, intron 1 of 37)	intron (NM_001159361, intron 1 of 37)	880.0	NM_001159361	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41051870-3	chr19	41051758	41051958	+	874.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001043228, intron 8 of 10)	intron (NM_001043228, intron 8 of 10)	22583.0	NM_009345	21673.0	Mm.25620	NM_009345	ENSMUSG00000025014	Dntt	Tdt	deoxynucleotidyltransferase, terminal	protein-coding	1.06377514282577	1.59393810879075	2.25014370728273	0.669223732696357	0.640996945833347	0.717223932669663	2.41504786498417	0.672606390814212	-0.348741102631995	0.888313106335579	0.998431161219273
Merged-chr17-26946757-4	chr17	26946688	26946888	+	815.1845089999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001281491, intron 3 of 18)	CpG	1331.0	NR_037244	100526534.0		NR_037244	ENSMUSG00000093118	Mir3083	mir-3083|mmu-mir-3083	microRNA 3083	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-79327756-4	chr18	79327599	79327799	+	964.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-218308.0	NM_053099	240427.0	Mm.312871	NM_053099	ENSMUSG00000024548	Setbp1	C130092E12|Seb|mKIAA0437	SET binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-8767041-3	chr3	8766962	8767162	+	765.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-100024.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-41605763-4	chr13	41605653	41605853	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163572)	promoter-TSS (NM_001163572)	-463.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-34809201-2	chr8	34809102	34809302	+	810.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_176933, intron 1 of 3)	CpG-13950	1592.0	NM_176933	319520.0	Mm.170276	NM_176933	ENSMUSG00000031530	Dusp4	2700078F24Rik|AI844617|BB104621|E130306H24Rik|MKP2	dual specificity phosphatase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-62908214-3	chr9	62908114	62908314	+	841.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019663, intron 7 of 13)	intron (NM_019663, intron 7 of 13)	-46190.0	NR_003965	677044.0	Mm.422004	NR_003965	ENSMUSG00000074250	Gm10653	-	ribsomal protein S2 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-82276370-1	chr12	82276270	82276470	+	687.0	f0_balb.idr	intron (NM_001167983, intron 3 of 23)	intron (NM_001167983, intron 3 of 23)	-34979.0	NM_172579	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-75152837-4	chr8	75152713	75152913	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43304.0	NM_008566	17218.0	Mm.5048	NM_008566	ENSMUSG00000005410	Mcm5	AA617332|AI324988|AL033333|Cdc46|Mcmd5|P1-CDC46	minichromosome maintenance complex component 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-119026141-2	chr14	119026041	119026241	+	574.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081252, intron 27 of 38)	L1MA5A|LINE|L1	-72824.0	NR_153786	102635192.0	Mm.398079	NR_153786		Gm16835	-	predicted gene, 16835	ncRNA	-1.17367364971587	-1.14665061133654	-1.15856004380685	-1.16834280623128	-1.17310571790619	-1.14406978763884	-0.42938571406771	-1.16659169643457	2.89727187181404	0.396361616615464	1
Merged-chr18-54917490-2	chr18	54917390	54917590	+	704.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360787, intron 2 of 8)	intron (NM_001360787, intron 2 of 8)	72690.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-30509756-4	chr6	30509636	30509836	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178625)	promoter-TSS (NM_178625)	37.0	NM_001347087	72649.0	Mm.45418	NM_178625	ENSMUSG00000029782	Tmem209	2700094F01Rik|AI428435	transmembrane protein 209	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-37999581-4	chr18	37999475	37999675	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001205336)	promoter-TSS (NM_001205336)	-606.0	NM_001205336	106952.0	Mm.247642	NM_139206	ENSMUSG00000024451	Arap3	Centd3|Drag1|E030006K04Rik|cnt-d3	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-41500550-4	chr7	41500493	41500693	+	994.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033530)	promoter-TSS (NM_001033530)	-703.0	NM_001033530	101835.0	Mm.370336	NM_001033530	ENSMUSG00000074166	AW146154	AI451288	expressed sequence AW146154	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-139064529-4	chr3	139064433	139064633	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356388, intron 1 of 13)	MLT1G|LTR|ERVL-MaLR	10668.0	NM_145544	229877.0	Mm.28893	NM_145544	ENSMUSG00000028149	Rap1gds1	BC011279|GDS1	RAP1, GTP-GDP dissociation stimulator 1	protein-coding	2.78243236137359	2.10945219244114	3.44350340782797	2.50256742234987	2.65748806133896	1.40408879646239	2.05220790533174	1.80470034157813	-1.52117115371569	0.0850798060367867	0.448020902351155
Merged-chr9-13314145-3	chr9	13314041	13314241	+	964.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur2|SINE|Alu	67185.0	NM_025534	66396.0	Mm.290620	NM_025534	ENSMUSG00000079084	Ccdc82	2310043N13Rik	coiled-coil domain containing 82	protein-coding	4.14947334443909	4.14552215627128	2.82008222999597	3.81740829072078	5.57440318973655	4.17592932935553	4.86595789662738	4.80664865368127	1.43344588764225	0.00186813222847493	0.0317521361627655
Merged-chr18-46601509-3	chr18	46601406	46601606	+	964.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010120, intron 2 of 2)	intron (NM_010120, intron 2 of 2)	3802.0	NM_010120	13664.0	Mm.262037	NM_010120	ENSMUSG00000057561	Eif1a	C76390|Ef1a|Eftu|Eif4c|eIF-1A|eIF-4C	eukaryotic translation initiation factor 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-20794891-4	chr11	20794831	20795031	+	658.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36177.0	NM_173752	216551.0	Mm.76694	NM_173752	ENSMUSG00000042363	Lgalsl	1110067D22Rik|A530071M23|Grpa|Hspc159|Lgalsla	lectin, galactoside binding-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-5601750-3	chr13	5601648	5601848	+	619.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	256344.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120119732-2	chr8	120119632	120119832	+	919.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_172286, intron 1 of 12)	intron (NM_172286, intron 1 of 12)	5580.0	NM_001163761	234797.0	Mm.101958	NM_172286	ENSMUSG00000031824	6430548M08Rik	AW049007|Kiaa0513|mKIAA0513	RIKEN cDNA 6430548M08 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-103717690-3	chr14	103717588	103717788	+	713.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18256.0	NR_045148	70898.0	Mm.27548	NR_045148	ENSMUSG00000089707	Slain1os	4921525B02Rik	SLAIN motif family, member 1, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117811077-2	chr10	117810977	117811177	+	690.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18372.0	NM_134010	103468.0	Mm.12568	NM_134010	ENSMUSG00000052798	Nup107	AW541137|C76801	nucleoporin 107	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119377537-4	chr11	119377426	119377626	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178743, intron 14 of 16)	intron (NM_178743, intron 14 of 16)	-12946.0	NR_035453	100316690.0		NR_035453	ENSMUSG00000088015	Mir1932	mir-1932|mmu-mir-1932	microRNA 1932	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120647069-2	chr11	120646969	120647169	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_026751, exon 1 of 1)	3' UTR (NM_026751, exon 1 of 1)	1268.0	NM_026751	68515.0	Mm.194594	NM_026751	ENSMUSG00000025141	Myadml2	1110012N22Rik	myeloid-associated differentiation marker-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-153752714-4	chr1	153752621	153752821	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011882, intron 2 of 8)	intron (NM_011882, intron 2 of 8)	3295.0	NM_011882	24014.0	Mm.259254	NM_011882	ENSMUSG00000066800	Rnasel	E230029I04Rik	ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115999723-2	chr11	115999594	115999794	+	725.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_133663, intron 27 of 38)	intron (NM_133663, intron 27 of 38)	-5979.0	NR_152190	100038636.0	Mm.450138	NR_152190		B230344G16Rik	-	RIKEN cDNA B230344G16 gene	ncRNA	-0.381585400818756	-0.366708512721193	-0.371562858757289	0.190535938700392	-0.380651466887718	0.407557580022817	-0.370490594776126	-0.374663637465993	0.655432742052515	0.803648996730535	1
Merged-chr13-52029257-2	chr13	52029157	52029357	+	593.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-67484.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-62466759-3	chr11	62466654	62466854	+	775.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039536, intron 1 of 6)	intron (NM_001039536, intron 1 of 6)	8294.0	NM_001039536	327942.0	Mm.390358	NM_199026	ENSMUSG00000014245	Pigl	Gm737	phosphatidylinositol glycan anchor biosynthesis, class L	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-72518688-4	chr11	72518592	72518792	+	898.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029932, intron 8 of 11)	MTD|LTR|ERVL-MaLR	-28772.0	NM_153060	216892.0	Mm.212812	NM_153060	ENSMUSG00000040447	Spns2	-	spinster homolog 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-94502457-2	chr3	94502357	94502557	+	587.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001082484, intron 10 of 11)	intron (NM_001082484, intron 10 of 11)	18099.0	NR_151857	78784.0	Mm.44292	NM_172434	ENSMUSG00000028137	Celf3	4930415M08Rik|BRUNOL1|CAGH4|ERDA4|ETR-1|Tnrc4	CUGBP, Elav-like family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115065455-1	chr11	115065355	115065555	+	549.0	f1_c57bl6.idr	Intergenic	Intergenic	-3416.0	NM_172050	217306.0	Mm.222667	NM_172050	ENSMUSG00000048498	Cd300e	BC034097|CLM2|Cd300le|TREM5	CD300E molecule	protein-coding	-0.953721354153451	-1.41025554057125	-1.42001056191158	-1.42802362688808	-1.44024889148474	-1.40814158675276	-1.41780223890411	-1.42658929208844	-2.11310844444413	0.543369238581748	1
Merged-chr15-36705504-2	chr15	36705404	36705604	+	744.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	85428.0	NM_001253807	22631.0	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-52568135-2	chr18	52568035	52568235	+	881.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38268.0	NM_001286182	16948.0	Mm.172	NM_010728	ENSMUSG00000024529	Lox	AI893619|TSC-160|rrg	lysyl oxidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-96525294-4	chr9	96525203	96525403	+	875.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46628.0	NM_001311135	19823.0	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-25576141-2	chr8	25576041	25576241	+	688.666626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_010206)	TTS (NM_010206)	-20058.0	NR_110510	102633315.0	Mm.437828	NR_110510	ENSMUSG00000086134	Gm16159	-	predicted gene 16159	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-52442259-3	chr6	52442164	52442364	+	935.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50187.0	NR_046049	74304.0	Mm.490579	NR_046049	ENSMUSG00000107895	1700094M24Rik	-	RIKEN cDNA 1700094M24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32586997-4	chr2	32586918	32587118	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001276425)	promoter-TSS (NM_001276425)	-60.0	NM_001276425	20448.0	Mm.27446	NM_011373	ENSMUSG00000079442	St6galnac4	SIAT7-D|ST6GalNAcIV|Siat7d	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-65786418-4	chr17	65786320	65786520	+	867.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152099, intron 2 of 20)	intron (NR_152099, intron 2 of 20)	3065.0	NR_104465	70351.0	Mm.48686	NM_146081	ENSMUSG00000061950	Ppp4r1	3110001J10Rik|Pp4r1	protein phosphatase 4, regulatory subunit 1	protein-coding	1.668656248065	1.63999062934379	1.79716651899178	2.06053239669529	2.68936993637989	2.58107230668675	2.59199005682899	2.51176686360627	1.99360219995989	0.0219498844054438	0.190723862623296
Merged-chr5-36742059-3	chr5	36741932	36742132	+	726.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6647.0	NM_133724	117197.0	Mm.46744	NM_133724	ENSMUSG00000060708	Bloc1s4	2610101N07Rik|Blos4|Cno	biogenesis of lysosomal organelles complex-1, subunit 4, cappuccino	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-34559632-2	chr5	34559532	34559732	+	606.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001145858, exon 8 of 13)	exon (NM_001145858, exon 8 of 13)	10056.0	NM_001145859	24055.0	Mm.5012	NM_011893	ENSMUSG00000054520	Sh3bp2	3BP2	SH3-domain binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-6388370-2	chr11	6388270	6388470	+	614.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6755.0	NM_001005867	52915.0	Mm.1144	NM_028601	ENSMUSG00000041164	Zmiz2	Zimp7	zinc finger, MIZ-type containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-114915988-3	chr5	114915884	114916084	+	712.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	-7256.0	NM_001359946	231655.0	Mm.95479	NM_145209	ENSMUSG00000041827	Oasl1	7530414C13Rik|oasl9	2'-5' oligoadenylate synthetase-like 1	protein-coding	0.608972538466914	1.5322948384988	0.451736938861798	0.442206479071424	0.428463215158133	1.3362202485778	0.454433292505105	1.21425150868505	0.281084465218585	0.871248538585554	0.998431161219273
Merged-chr17-88450714-1	chr17	88450614	88450814	+	694.0	f0_balb.idr	intron (NM_001355742, intron 1 of 5)	MTA_Mm|LTR|ERVL-MaLR	10010.0	NM_001355742	14236.0	Mm.112824	NM_180974	ENSMUSG00000034998	Foxn2	3230402J05Rik|6030465J18Rik|Fkh19|Foxn1|HTLF	forkhead box N2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-58411763-3	chr3	58411663	58411863	+	687.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2957.0	NM_001081229	72033.0	Mm.218409	NM_001081229	ENSMUSG00000027806	Tsc22d2	1810043J12Rik|5530402M19Rik	TSC22 domain family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171344552-2	chr1	171344533	171344733	+	636.0	f0_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360825)	promoter-TSS (NM_001360825)	-321.0	NM_001360825	18637.0	Mm.10756	NM_011070	ENSMUSG00000006412	Pfdn2	ESTM27|W48336	prefoldin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19202694-3	chr7	19202568	19202768	+	797.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347582, intron 19 of 21)	intron (NM_001347582, intron 19 of 21)	-9870.0	NM_175668	319197.0	Mm.135984	NM_175668	ENSMUSG00000044317	Gpr4	-	G protein-coupled receptor 4	protein-coding	-2.18308165884198	-2.15547475440471	-2.16382331017202	-2.1706810624505	-2.18114370519566	-2.15366558754311	-2.03057248461154	-2.16945352807143	0.759018020146679	0.829933115115583	1
Merged-chr9-66594315-3	chr9	66594225	66594425	+	635.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1210.0	NM_001302116	235441.0	Mm.32465	NM_144937	ENSMUSG00000032376	Usp3	AA409661|BC017156	ubiquitin specific peptidase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34368592-1	chr17	34368492	34368692	+	1000.0	f1_c57bl6.idr	intron (NM_079835, intron 8 of 8)	intron (NM_079835, intron 8 of 8)	-8540.0	NM_001111094	100038862.0	Mm.440426	NM_201405	ENSMUSG00000062638	Btnl1	Btnl3|Gm316|Gm33	butyrophilin-like 1	protein-coding	1.45601091809198	1.29791286975333	0.63283032341933	1.08521597752747	0.774426388532914	0.85723039849579	0.63509227446379	1.09181032463542	-1.49567159343072	0.317452857155072	0.820861935376414
Merged-chr10-24653034-1	chr10	24652934	24653134	+	824.0	f1_c57bl6.idr	intron (NM_001308329, intron 18 of 24)	intron (NM_001308329, intron 18 of 24)	57592.0	NM_010217	14219.0	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-64824882-4	chr9	64824780	64824980	+	985.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162917, intron 2 of 34)	intron (NM_001162917, intron 2 of 34)	13869.0	NM_001162917	102442.0	Mm.222473	NM_176935	ENSMUSG00000053641	Dennd4a	AI115600|AI851943|F730015K02Rik	DENN/MADD domain containing 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-90924852-4	chr16	90924763	90924963	+	794.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_026502)	TTS (NM_026502)	9986.0	NM_026502	68001.0	Mm.45374	NM_026502	ENSMUSG00000022972	1110004E09Rik	-	RIKEN cDNA 1110004E09 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-133652307-2	chr3	133652207	133652407	+	693.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-107917.0	NM_001346736	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-53301428-2	chr11	53301328	53301528	+	676.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008300)	promoter-TSS (NM_008300)	-949.0	NM_008300	15525.0	Mm.239865	NM_008300	ENSMUSG00000020361	Hspa4	70kDa|AI317151|APG-2|Hsp110|Hsp70RY|mKIAA4025	heat shock protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114523483-4	chr11	114523397	114523597	+	783.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74637.0	NR_027643	319819.0	Mm.50754	NM_177008	ENSMUSG00000062391	4932435O22Rik	-	RIKEN cDNA 4932435O22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-32582285-3	chr9	32582192	32582392	+	855.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40840.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133012484-2	chr4	133012384	133012584	+	988.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_146155, intron 2 of 6)	CpG-10425	978.0	NM_146155	230793.0	Mm.31816	NM_146155	ENSMUSG00000037692	Ahdc1	D030015G18Rik	AT hook, DNA binding motif, containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-44545823-2	chr19	44545723	44545923	+	834.833374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033343)	promoter-TSS (NM_001033343)	25.0	NM_001033343	240667.0	Mm.329873	NM_001033343	ENSMUSG00000051984	Sec31b	Gm341|Sec31l2	Sec31 homolog B (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83191246-4	chr11	83191145	83191345	+	834.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011409)	promoter-TSS (NM_011409)	-85.0	NM_011409	20557.0	Mm.290922	NM_011409	ENSMUSG00000018986	Slfn3	-	schlafen 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-29370212-4	chr19	29370064	29370264	+	802.741699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021893, intron 1 of 6)	intron (NM_021893, intron 1 of 6)	2726.0	NM_021893	60533.0	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-48858157-4	chr11	48858072	48858272	+	925.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13248.0	NM_001355757	15944.0	Mm.29938	NM_008326	ENSMUSG00000046879	Irgm1	Ifggd3|Ifi1|Iigp3|Iipg3|Irgm	immunity-related GTPase family M member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-43395449-4	chr11	43395337	43395537	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20976.0	NR_029558	387164.0		NR_029558	ENSMUSG00000065601	Mir146	Mirn146|miR-146a|mmu-mir-146	microRNA 146	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-148684920-2	chr2	148684820	148685020	+	766.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_028986, exon 2 of 6)	exon (NM_028986, exon 2 of 6)	3800.0	NM_028986	74533.0	Mm.136913	NM_028986	ENSMUSG00000027439	Gzf1	8430437G08Rik|Zfp336|mGZF1	GDNF-inducible zinc finger protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89913819-2	chr3	89913719	89913919	+	575.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310676)	promoter-TSS (NM_001310676)	-623.0	NM_010559	16194.0	Mm.2856	NM_010559	ENSMUSG00000027947	Il6ra	CD126|IL-6R|IL-6R-alpha|IL-6RA|Il6r	interleukin 6 receptor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-101349628-4	chr4	101349556	101349756	+	951.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040708, intron 1 of 1)	intron (NR_040708, intron 1 of 1)	-2629.0	NR_029537	387143.0		NR_029537	ENSMUSG00000065451	Mir101a	Mirn101|Mirn101a|miR-101|mir-101a	microRNA 101a	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-32361594-4	chr18	32361470	32361670	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045403, intron 2 of 2)	intron (NR_045403, intron 2 of 2)	-15647.0	NM_001083334	30948.0	Mm.4383	NM_009668	ENSMUSG00000024381	Bin1	ALP-1|Amphl|BRAMP-2|SH3P9	bridging integrator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-92375944-3	chr5	92375838	92376038	+	837.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310664, intron 2 of 10)	intron (NM_001310664, intron 2 of 10)	-12196.0	NM_181728	109979.0	Mm.263514	NM_181728	ENSMUSG00000034842	Art3	4930569O04Rik|ARTC3	ADP-ribosyltransferase 3	protein-coding	-0.126155371067252	0.354124085817279	-0.117195410215797	-0.120573235825633	-0.12532699617424	0.229931231746087	0.0541720043956643	0.287163126517307	0.898717061177253	0.686410514992727	1
Merged-chr4-139617404-1	chr4	139617304	139617504	+	571.0	f1_balb.idr	3' UTR (NM_183148, exon 12 of 12)	3' UTR (NM_183148, exon 12 of 12)	-5490.0	NM_175438	212647.0	Mm.273571	NM_175438	ENSMUSG00000028737	Aldh4a1	A930035F14Rik|Ahd-1|Ahd1|Aldh4|Aldh5a1|E330022C09|P5cd|P5cdh|P5cdhl|P5cdhs|Ssdh1	aldehyde dehydrogenase 4 family, member A1	protein-coding	-0.583449067377857	-1.02282152578373	-1.03400008326803	-1.03822883962362	-0.777224525718346	-1.02039908574442	-1.03146950288059	-1.03789690212328	-0.791518325477985	0.808258493497815	1
Merged-chr11-51635857-4	chr11	51635771	51635971	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025346)	promoter-TSS (NM_025346)	25.0	NM_025346	66089.0	Mm.288183	NM_025346	ENSMUSG00000001054	Rmnd5b	0610039K22Rik|Gid2	required for meiotic nuclear division 5 homolog B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-45819415-3	chr4	45819292	45819492	+	710.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018741, intron 1 of 4)	intron (NM_018741, intron 1 of 4)	7435.0	NM_018741	75426.0	Mm.3919	NM_018741	ENSMUSG00000035551	Igfbpl1	2810011G06Rik|2810453O06Rik|IGFBPL	insulin-like growth factor binding protein-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-29827400-4	chr6	29827324	29827524	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001171000, intron 1 of 16)	intron (NM_001171000, intron 1 of 16)	-26317.0	NM_001347084	74340.0	Mm.210899	NM_021414	ENSMUSG00000029772	Ahcyl2	4631427C17Rik|AI227036|Adohcyase3|mKIAA0828	S-adenosylhomocysteine hydrolase-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-99932099-3	chr14	99932007	99932207	+	799.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010636, intron 5 of 6)	intron (NM_010636, intron 5 of 6)	217689.0	NM_010636	16597.0	Mm.396499	NM_010636	ENSMUSG00000072294	Klf12	2700063E05Rik|AI225908|AI315654|AP-2rep|B130052C06Rik|D530033K05Rik	Kruppel-like factor 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-10396284-4	chr10	10396178	10396378	+	947.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127353, intron 21 of 36)	intron (NM_001127353, intron 21 of 36)	76036.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-121489297-3	chr10	121489195	121489395	+	898.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4_|SINE|ID	-13045.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	3.64780663124131	3.55147264067109	1.488327131277	3.52616838383386	3.31799782428857	2.50900417447574	1.50128125659791	2.84906951994982	-0.971341483892747	0.254552948570701	0.752618599544423
Merged-chr10-53519092-3	chr10	53518978	53519178	+	732.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_037973)	promoter-TSS (NR_037973)	-89.0	NR_037973	100502868.0	Mm.297722	NR_037973	ENSMUSG00000112739	Gm20597	B230314j19	predicted gene, 20597	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-30920742-4	chr5	30920634	30920834	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001349066)	promoter-TSS (NM_001349066)	-825.0	NM_001310525	16548.0	Mm.22451	NM_008439	ENSMUSG00000029162	Khk	-	ketohexokinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80740376-2	chr10	80740276	80740476	+	587.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007460, intron 1 of 30)	intron (NM_007460, intron 1 of 30)	1899.0	NM_007460	11776.0	Mm.27082	NM_007460	ENSMUSG00000020198	Ap3d1	AA407035|Ap3d|Bolvr|mBLVR1|mh|mocha	adaptor-related protein complex 3, delta 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-59005457-2	chr13	59005346	59005546	+	687.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025074, intron 13 of 17)	intron (NM_001025074, intron 13 of 17)	197749.0	NM_001025074	18212.0	Mm.130054	NM_008745	ENSMUSG00000055254	Ntrk2	GP145-TrkB/GP95-TrkB|Tkrb|trk-B|trkB	neurotrophic tyrosine kinase, receptor, type 2	protein-coding	0.200187409054448	-0.188663638598767	-0.19189312650471	-0.194357447761323	0.125791957480138	0.238970639419952	-0.191184274950638	-0.193928652749155	0.892418447530776	0.714793487157982	1
Merged-chr15-59759833-4	chr15	59759724	59759924	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35135.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91855022-2	chr16	91854922	91855122	+	842.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110275, intron 23 of 28)	intron (NM_001110275, intron 23 of 28)	76608.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-92964362-4	chr13	92964254	92964454	+	982.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	X7B_LINE|LINE|CR1	-108950.0	NR_036451	100502942.0	Mm.441946	NM_177623	ENSMUSG00000114382	Gm4814	C920025J10|EG218444	predicted gene 4814	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-103898804-4	chr14	103898687	103898887	+	997.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54311.0	NM_001136061	13618.0	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129589075-2	chr2	129588975	129589175	+	736.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3764.0	NM_001291020	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	-0.489221680144804	-0.735000116667847	-0.737962241227788	-0.740238501748144	-0.603715691325729	-0.73433059336022	-0.737310061326683	-0.220856910406493	1.37551939746976	0.623558226807602	1
Merged-chr4-124843654-3	chr4	124843536	124843736	+	617.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008636, intron 10 of 10)	intron (NM_008636, intron 10 of 10)	6928.0	NM_001347196	68920.0	Mm.272397	NM_001142727	ENSMUSG00000078570	1110065P20Rik	C530005M16Rik	RIKEN cDNA 1110065P20 gene	protein-coding	0.792989128150706	0.898029329335522	0.629880039621319	0.838367911327372	0.799876013055144	1.97110560753666	1.80213599604445	0.843025206219048	2.85790167533405	0.0476220192157604	0.316372639286098
Merged-chr17-70848004-4	chr17	70847879	70848079	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164074, intron 1 of 2)	intron (NM_001164074, intron 1 of 2)	-1202.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-155517922-4	chr2	155517826	155518026	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019811)	promoter-TSS (NM_019811)	-117.0	NM_019811	60525.0	Mm.255026	NM_019811	ENSMUSG00000027605	Acss2	1110017C11Rik|ACAS|Acas1|Acas2|AceCS1|Acs1	acyl-CoA synthetase short-chain family member 2	protein-coding	6.52582149896372	6.61292428383805	5.7876394500952	6.77927329018762	6.04456772316147	6.1101622999946	6.07328228446811	6.66728899502972	-0.242797112628416	0.329496110370232	0.831942889324137
Merged-chr10-40883903-2	chr10	40883803	40884003	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027879)	promoter-TSS (NM_027879)	369.0	NM_031877	83767.0	Mm.41353	NM_031877	ENSMUSG00000019831	Wasf1	AI195380|AI838537|Scar|WAVE|WAVE-1	WAS protein family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-39368384-2	chr1	39368284	39368484	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252219, intron 2 of 4)	CpG	533.0	NM_001252218	114641.0	Mm.379302	NM_053257	ENSMUSG00000073702	Rpl31	Dts	ribosomal protein L31	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-11788028-3	chr19	11787933	11788133	+	900.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011502, intron 5 of 10)	intron (NM_011502, intron 5 of 10)	17618.0	NM_025606	94063.0	Mm.203928	NM_025606	ENSMUSG00000024683	Mrpl16	2310039D06Rik	mitochondrial ribosomal protein L16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35126465-4	chr17	35126346	35126546	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033477)	promoter-TSS (NM_033477)	44.0	NM_033477	114585.0	Mm.42070	NM_033477	ENSMUSG00000043311	D17H6S53E	G4|NG34	DNA segment, Chr 17, human D6S53E	protein-coding	3.7041010582645	3.48931219881639	3.61655397784083	3.18959680030314	3.50452125000381	3.41912259588004	3.64356437420738	2.9995301157401	-0.162087894698287	0.763297900186194	0.998431161219273
Merged-chr13-25857284-4	chr13	25857189	25857389	+	856.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	109027.0	NR_045062	100503530.0	Mm.86763	NR_045062	ENSMUSG00000086531	Gm11351	-	predicted gene 11351	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-5012460-4	chr11	5012367	5012567	+	925.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001243043, intron 2 of 22)	intron (NM_001243043, intron 2 of 22)	25643.0	NM_001355660	11764.0	Mm.274816	NM_007454	ENSMUSG00000009090	Ap1b1	Adtb1|b2b1660Clo	adaptor protein complex AP-1, beta 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-38289719-4	chr15	38289593	38289793	+	819.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10207.0	NM_001357677	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118663623-2	chr9	118663456	118663656	+	938.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 7 of 27)	intron (NM_133721, intron 7 of 27)	-48136.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-168539246-4	chr2	168539160	168539360	+	978.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037177, intron 3 of 6)	MER3|DNA|hAT-Charlie	51105.0	NM_001291178	18019.0	Mm.116802	NM_010899	ENSMUSG00000027544	Nfatc2	AI607462|NF-ATc2|NF-ATp|NFAT1|NFAT1-D|Nfatp	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-23234761-4	chr16	23234649	23234849	+	881.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252505, intron 1 of 7)	intron (NM_001252505, intron 1 of 7)	8728.0	NM_001252505	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-107017706-2	chr13	107017606	107017806	+	579.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008442, intron 1 of 21)	intron (NM_008442, intron 1 of 21)	4408.0	NM_001145779	16563.0	Mm.355686	NM_008442	ENSMUSG00000021693	Kif2a	C530030B14Rik|Kif2|Kns2|M-kinesin	kinesin family member 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-134624276-4	chr4	134624152	134624352	+	936.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207237, intron 2 of 11)	intron (NM_207237, intron 2 of 11)	-56401.0	NR_105829	102465216.0		NR_105829	ENSMUSG00000099289	Mir6403	Gm27992|mmu-mir-6403	microRNA 6403	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-41949145-2	chr15	41949045	41949245	+	712.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-79425.0	NM_175456	223513.0	Mm.148913	NM_175456	ENSMUSG00000042895	Abra	C130068O12Rik|STARS	actin-binding Rho activating protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125151386-2	chr6	125151286	125151486	+	570.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001302779, exon 4 of 9)	exon (NM_001302779, exon 4 of 9)	6162.0	NM_001302779	320678.0	Mm.129415	NM_178787	ENSMUSG00000038271	Iffo1	4733401N06Rik|A930037G23Rik|HOM-TES-103|Iffo	intermediate filament family orphan 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-11113434-3	chr8	11113336	11113536	+	983.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-105006.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-39412952-4	chr10	39412849	39413049	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122892, intron 2 of 12)	intron (NM_001122892, intron 2 of 12)	43150.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-21737189-4	chr5	21737100	21737300	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028431)	promoter-TSS (NM_028431)	40.0	NM_028431	73078.0	Mm.301655	NM_028431	ENSMUSG00000029017	Pmpcb	3110004O18Rik|MPP11|MPPB|MPPP52	peptidase (mitochondrial processing) beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-146810817-4	chr5	146810730	146810930	+	792.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15874.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118488469-2	chr11	118488369	118488569	+	1000.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_153103, exon 14 of 14)	non-coding (NR_153103, exon 14 of 14)	11637.0	NM_001359368	217364.0	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16729666-2	chr7	16729566	16729766	+	925.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTRETN_Mm|LTR|ERVK	7737.0	NM_011927	26368.0	Mm.27096	NM_011927	ENSMUSG00000007209	Ceacam9	AA410097|AW545709|Cea-5|Cea5|mmCGM8	carcinoembryonic antigen-related cell adhesion molecule 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-88260454-6	chr1	88260275	88260475	+	767.87146	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_198652, exon 8 of 8)	3' UTR (NM_198652, exon 8 of 8)	9033.0	NR_040291	78605.0	Mm.384762	NR_040291		6430706D22Rik	-	RIKEN cDNA 6430706D22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-48101053-4	chr3	48100955	48101155	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	-74296.0	NR_040408	666202.0	Mm.465057	NR_040408	ENSMUSG00000103257	Gm7977	EG666202	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-43678491-3	chr7	43678368	43678568	+	723.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_145582)	TTS (NM_145582)	6437.0	NM_145582	233189.0	Mm.26514	NM_145582	ENSMUSG00000038888	Ctu1	Atpbd3|BC005752	cytosolic thiouridylase subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-12927583-3	chr18	12927444	12927644	+	949.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207530, intron 4 of 27)	intron (NM_207530, intron 4 of 27)	14297.0	NM_207530	64291.0	Mm.259470	NM_020573	ENSMUSG00000044252	Osbpl1a	G430090F17Rik|Gm753|ORP-1|Osbpl1b	oxysterol binding protein-like 1A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35195444-4	chr17	35195335	35195535	+	936.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_105939)	TTS (NR_105939)	463.0	NR_105939	102465588.0		NR_105939	ENSMUSG00000098291	Mir6973a	Gm27967|mmu-mir-6973a	microRNA 6973a	ncRNA	3.74639512173625	4.17832718281405	3.08451010861903	2.20575305081282	3.88050253805145	3.88459055976053	4.32916106172077	3.007557957883	0.520841375648099	0.394201524475719	0.882643365025628
Merged-chr9-40750388-3	chr9	40750288	40750488	+	915.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133733, intron 1 of 6)	intron (NM_133733, intron 1 of 6)	-50885.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	3.0723963588227	2.39576821280307	2.45365743095218	2.88575761559024	2.594626867057	1.55324780428873	2.47282463550347	3.05193117930896	-0.405323743828663	0.616004453772825	0.977352076822579
Merged-chr18-53161043-2	chr18	53160943	53161143	+	831.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15249.0	NM_001357463	67804.0	Mm.252171	NM_026386	ENSMUSG00000034484	Snx2	0610030A03Rik	sorting nexin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5746179-2	chr19	5746044	5746244	+	674.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008520, intron 4 of 27)	intron (NM_008520, intron 4 of 27)	5240.0	NM_008520	16998.0	Mm.182396	NM_008520	ENSMUSG00000024940	Ltbp3	Ltbp2|mFLJ00070	latent transforming growth factor beta binding protein 3	protein-coding	1.72974082397426	1.56544397294392	1.06196356168331	0.8444653321104	1.39209727709829	1.57843081030705	1.39069956867001	0.846412177840346	-0.108805961916018	0.935216376699657	0.998431161219273
Merged-chr12-76943202-4	chr12	76943089	76943289	+	982.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361663, intron 3 of 4)	intron (NM_001361663, intron 3 of 4)	19059.0	NM_008558	17187.0	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-92467620-1	chr5	92467520	92467720	+	645.0	f0_c57.idr	intron (NM_007644, intron 2 of 11)	intron (NM_007644, intron 2 of 11)	9063.0	NR_105843	102466159.0		NR_105843	ENSMUSG00000099160	Mir6415	Gm27714|mmu-mir-6415	microRNA 6415	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-87281548-4	chr17	87281404	87281604	+	869.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015506, intron 1 of 4)	intron (NR_015506, intron 1 of 4)	1310.0	NR_015506	74597.0	Mm.63783	NR_015506	ENSMUSG00000085287	4833418N02Rik	-	RIKEN cDNA 4833418N02 gene	ncRNA	2.43081057306358	2.3932266932474	2.87414768287477	2.12720679590702	2.15867533575607	2.27452688363494	2.33257062501073	1.83219506066152	-0.767455960970436	0.353503752902778	0.853132398390271
Merged-chr14-77036762-4	chr14	77036667	77036867	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310648)	promoter-TSS (NM_001310648)	-5.0	NM_001310648	108811.0	Mm.102168	NM_175369	ENSMUSG00000034795	Ccdc122	4933415L06Rik	coiled-coil domain containing 122	protein-coding	6.83057056666782	6.12908646796078	6.94408422762729	6.29903176118418	6.64090450414574	5.39020083176601	6.80973401529875	6.81738369968328	-0.0738176915764755	0.791468449402349	0.998431161219273
Merged-chr17-78836833-1	chr17	78836733	78836933	+	596.0	f1_c57bl6.idr	5' UTR (NM_181649, exon 2 of 10)	5' UTR (NM_181649, exon 2 of 10)	1317.0	NM_181649	53951.0	Mm.220253	NM_181649	ENSMUSG00000050668	Gpatch11	2310002B06Rik|C80922|Ccdc75|L26697	G patch domain containing 11	protein-coding	0.806077988154553	2.56393847527093	1.76556543885299	1.07636945598028	1.21143406003493	1.55980264210331	1.64995596350176	0.840403581445839	-1.17106527555163	0.359994075825809	0.856306289008338
Merged-chr4-99298883-4	chr4	99298803	99299003	+	850.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	104756.0	NM_001145967	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	2.87490781842846	3.65398853021529	3.66583742539636	2.06843859551338	2.1528835450629	3.35722187258451	3.75399979394644	2.84350876509982	-0.0956411519898633	0.893817704409138	0.998431161219273
Merged-chr10-99181095-3	chr10	99180958	99181158	+	796.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153333, intron 11 of 12)	intron (NR_153333, intron 11 of 12)	72923.0	NM_015737	14426.0	Mm.314	NM_015737	ENSMUSG00000090035	Galnt4	AV011803	polypeptide N-acetylgalactosaminyltransferase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-58861388-3	chr15	58861288	58861488	+	789.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16C|LTR|ERVK	-11261.0	NM_026642	68260.0	Mm.278805	NM_026642	ENSMUSG00000037085	Trmt12	4632406N01Rik|AI449275|Tyw2	tRNA methyltranferase 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-73211619-2	chr14	73211519	73211719	+	647.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_009029, exon 20 of 27)	exon (NM_009029, exon 20 of 27)	-4768.0	NR_030459	751541.0		NR_030459	ENSMUSG00000076121	Mir687	Mirn687|mir-687|mmu-mir-687	microRNA 687	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129548481-2	chr2	129548381	129548581	+	730.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-11879.0	NM_177653	228592.0	Mm.452175	NM_177653	ENSMUSG00000043727	F830045P16Rik	Sirpb3	RIKEN cDNA F830045P16 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-90242602-3	chr11	90242505	90242705	+	850.166626	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-6871.0	NM_026178	67468.0	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-42480349-3	chr17	42480240	42480440	+	850.5277710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355270, intron 2 of 2)	RCHARR1|DNA|hAT-Charlie	130973.0	NM_181753	353344.0	Mm.184937	NM_181753	ENSMUSG00000043972	Opn5	Gpr136|Neuropsin|PGR12|TMEM13	opsin 5	protein-coding	1.72701842259938	2.5840144370496	1.90121907194535	1.45544929765669	1.38343483936167	0.900353590228103	0.877556326578061	0.857385384480318	-3.40066499789712	0.0114877578336475	0.120011232856768
Merged-chr3-69062978-4	chr3	69062876	69063076	+	913.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18234.0	NM_025863	66949.0	Mm.176695	NM_025863	ENSMUSG00000034317	Trim59	2310035M22Rik|2700022F13Rik|Mrf1|TSBF1	tripartite motif-containing 59	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167746997-2	chr2	167746897	167747097	+	653.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55820.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-8446605-4	chr15	8446519	8446719	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2156.0	NM_201232	71175.0	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	NIPBL cohesin loading factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-177141660-4	chr1	177141557	177141757	+	905.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011785, intron 1 of 12)	intron (NM_011785, intron 1 of 12)	107110.0	NM_011785	23797.0	Mm.235194	NM_011785	ENSMUSG00000019699	Akt3	AI851531|D930002M15Rik|Nmf350	thymoma viral proto-oncogene 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-128373494-4	chr10	128373378	128373578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3441.0	NM_001081040	210582.0	Mm.296876	NM_001081040	ENSMUSG00000039914	Coq10a	Gm1	coenzyme Q10A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-70533118-1	chr18	70533018	70533218	+	771.0	f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-2797.0	NM_001289515	26447.0	Mm.244352	NM_011972	ENSMUSG00000038425	Poli	Rad30b	polymerase (DNA directed), iota	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-58836990-4	chr7	58836888	58837088	+	839.4833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	178786.0	NM_009728	11982.0	Mm.135129	NM_009728	ENSMUSG00000025324	Atp10a	Atp10c|pfatp	ATPase, class V, type 10A	protein-coding	0.803611329979206	0.681231810852116	1.26682830319692	0.663750402597002	1.25565954332552	1.06014710178791	1.15903781172269	1.23173054403897	1.46251819905457	0.318441964597307	0.821951596143819
Merged-chr17-83687163-6	chr17	83687012	83687212	+	824.194458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-19051.0	NM_001171054	116871.0	Mm.277668	NM_054082	ENSMUSG00000055817	Mta3	1110002J22Rik|mKIAA1266	metastasis associated 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-64258017-2	chr15	64257917	64258117	+	738.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 3 of 28)	intron (NM_001276461, intron 3 of 28)	54656.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-102983334-4	chr14	102983234	102983434	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_039592)	promoter-TSS (NR_039592)	-697.0	NM_177715	239217.0	Mm.246466	NM_177715	ENSMUSG00000098557	Kctd12	AU046135|AW538430|Pfet1|Pfetin	potassium channel tetramerisation domain containing 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-93122877-3	chr6	93122780	93122980	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	182298.0	NR_015530	330385.0	Mm.483472	NR_015530	ENSMUSG00000097462	9530026P05Rik	B430306B02	RIKEN cDNA 9530026P05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-31936367-2	chr16	31936267	31936467	+	642.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172822, intron 1 of 2)	intron (NM_172822, intron 1 of 2)	2516.0	NM_172822	239827.0	Mm.440388	NM_172822	ENSMUSG00000045625	Pigz	F630022B06Rik	phosphatidylinositol glycan anchor biosynthesis, class Z	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-63246664-3	chr13	63246536	63246736	+	971.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289926, intron 13 of 15)	intron (NM_001289926, intron 13 of 15)	6607.0	NR_110521	72061.0	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-71930254-4	chr6	71930158	71930358	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009088, intron 11 of 33)	intron (NM_009088, intron 11 of 33)	21205.0	NM_009088	20019.0	Mm.135581	NM_009088	ENSMUSG00000049553	Polr1a	194kDa|2900087K15Rik|3010014K16Rik|RPA194|Rpo1-4|mRPA1	polymerase (RNA) I polypeptide A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-62839360-5	chr14	62839181	62839381	+	829.631104	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175546, intron 1 of 11)	intron (NM_175546, intron 1 of 11)	1560.0	NR_106174	102465889.0		NR_106174	ENSMUSG00000099245	Mir8098	Gm27462|mmu-mir-8098	microRNA 8098	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-109212294-3	chr13	109212209	109212409	+	776.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011056, intron 3 of 16)	intron (NM_011056, intron 3 of 16)	-112435.0	NR_030644	100124489.0		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-88178621-1	chr15	88178521	88178721	+	841.25	f0_balb.idr	Intergenic	Intergenic	-136253.0	NR_045281	328579.0	Mm.146839	NR_045281	ENSMUSG00000116331	B230214G05Rik	B230214G05	RIKEN cDNA B230214G05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-21688645-2	chr16	21688545	21688745	+	663.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001881, intron 1 of 1)	Lx8|LINE|L1	6020.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-22071431-4	chr9	22071357	22071557	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310759)	promoter-TSS (NM_001310759)	-81.0	NM_001310759	319601.0	Mm.347707	NM_177318	ENSMUSG00000038895	Zfp653	E430039K05Rik|Znf653	zinc finger protein 653	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129577283-2	chr4	129577183	129577383	+	860.4166869999999	f1_balb.idr|f1_c57bl6.idr	exon (NM_182783, exon 2 of 2)	exon (NM_182783, exon 2 of 2)	1297.0	NM_182783	230766.0	Mm.20377	NM_182783	ENSMUSG00000050493	Fam167b	SEC	family with sequence similarity 167, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-15498955-2	chr17	15498855	15499055	+	721.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013684)	promoter-TSS (NM_013684)	-679.0	NM_011185	19170.0	Mm.32912	NM_011185	ENSMUSG00000014769	Psmb1	AA409053|C81484|Lmpc5	proteasome (prosome, macropain) subunit, beta type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94689298-4	chr10	94689174	94689374	+	911.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015524)	promoter-TSS (NR_015524)	484.0	NM_029852	77048.0	Mm.296971	NM_029852	ENSMUSG00000020024	Cep83	2600001G24Rik|4921537D05Rik|5730513H21Rik|Ccdc41	centrosomal protein 83	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-31177356-4	chr7	31177247	31177447	+	917.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14989.0	NR_046062	100038516.0	Mm.387223	NR_046062	ENSMUSG00000100985	Gm10640	EG668322	predicted gene 10640	ncRNA	0.81198593005951	0.940684919656077	1.72777154475993	0.504034106101196	0.490915407832015	0.949788183957471	0.515744196707916	1.01561707503504	-1.45284101396668	0.363617123677387	0.858903333095609
Merged-chr4-133631170-4	chr4	133631066	133631266	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001017968, intron 1 of 7)	intron (NM_001017968, intron 1 of 7)	2263.0	NM_001017968	503610.0	Mm.331948	NM_001017968	ENSMUSG00000037553	Zdhhc18	-	zinc finger, DHHC domain containing 18	protein-coding	4.54627187159708	2.95145662070521	3.76685171705719	4.57192411670199	4.47062713180224	4.36278845252919	4.54598232316149	4.67245577683332	0.510784654853793	0.262685228578286	0.764117606499117
Merged-chr17-62737589-2	chr17	62737489	62737689	+	945.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_010109, intron 1 of 3)	(CCCTAA)n|Simple_repeat|Simple_repeat	143728.0	NM_207654	13640.0	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191177373-4	chr1	191177329	191177529	+	773.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007498, exon 2 of 4)	exon (NM_007498, exon 2 of 4)	5904.0	NM_007498	11910.0	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-136160313-4	chr4	136160228	136160428	+	880.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11946.0	NM_177733	242705.0	Mm.307932	NM_177733	ENSMUSG00000018983	E2f2	E2F-2	E2F transcription factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-75845997-4	chr13	75845896	75846096	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053108, intron 1 of 2)	intron (NM_053108, intron 1 of 2)	6110.0	NM_053108	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	5.14393419959324	5.85138724760834	5.17051183335169	5.14246753091791	5.35815662234168	5.81176762673554	5.2409190385174	5.19770073294105	0.0748368438461579	0.804752166444635	0.998431161219273
Merged-chr11-26211964-2	chr11	26211873	26212073	+	762.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-1397.0	NR_027973	70626.0	Mm.379180	NM_027486		5730522E02Rik	-	RIKEN cDNA 5730522E02 gene	ncRNA	2.18296491370432	1.45860590973511	1.84305367859241	1.36869248644736	1.13800846215946	2.34247950339131	1.22137999593859	0.959365098301561	-0.559521350202474	0.639043395483151	0.982599433509505
Merged-chr1-165844765-6	chr1	165844677	165844877	+	649.222229	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113391, intron 1 of 7)	intron (NM_001113391, intron 1 of 7)	56096.0	NM_001113392	12503.0	Mm.217308	NM_031162	ENSMUSG00000005763	Cd247	4930549J05Rik|A430104F18Rik|AW552088|Cd3|Cd3-eta|Cd3-zeta|Cd3h|Cd3z|Cd3zeta|T3z|Tcrk|Tcrz	CD247 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-67375773-4	chr13	67375676	67375876	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001001186)	promoter-TSS (NM_001001186)	-13.0	NM_001001186	408065.0	Mm.461583	NM_001001186	ENSMUSG00000078995	Zfp456	BC065418|Rslcan-13	zinc finger protein 456	protein-coding	6.14910255288581	6.05249936089259	6.11369662331201	5.89802141418428	5.87621188305021	6.69939526366611	5.92365908413551	5.81790759401388	0.0693601044669614	0.782893584788089	0.998431161219273
Merged-chr10-99165105-4	chr10	99164999	99165199	+	880.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153333, intron 11 of 12)	intron (NR_153333, intron 11 of 12)	56964.0	NM_015737	14426.0	Mm.314	NM_015737	ENSMUSG00000090035	Galnt4	AV011803	polypeptide N-acetylgalactosaminyltransferase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-89591500-1	chr15	89591400	89591600	+	784.0	f1_balb.idr	intron (NM_026817, intron 1 of 8)	CpG	423.0	NM_026817	68708.0	Mm.23258	NM_026817	ENSMUSG00000022621	Rabl2	1110031N17Rik|AW549303|Rabl2a	RAB, member RAS oncogene family-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-27186949-4	chr14	27186907	27187107	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289686, intron 2 of 12)	RSINE1|SINE|B4	43014.0	NM_001289686	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-65146543-4	chr6	65146436	65146636	+	849.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1806.0	NM_019455	54486.0	Mm.410688	NM_019455	ENSMUSG00000029919	Hpgds	H-PGDS|Ptgds2	hematopoietic prostaglandin D synthase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-112210265-2	chr5	112210165	112210365	+	664.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_045377)	TTS (NR_045377)	3502.0	NR_045378	75569.0	Mm.243721	NR_045377	ENSMUSG00000101683	1700028D13Rik	-	RIKEN cDNA 1700028D13 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-103326694-3	chr12	103326602	103326802	+	645.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023049, intron 7 of 9)	MIR|SINE|MIR	11743.0	NM_001195726	100504156.0	Mm.425749	NM_001195726	ENSMUSG00000096753	Fam181a	EG544888	family with sequence similarity 181, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-108408337-4	chr6	108408247	108408447	+	916.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 35 of 61)	intron (NM_010585, intron 35 of 61)	-81396.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	-1.22315906685268	-1.19557143632602	-1.20673282037136	-0.55836125556573	-1.22265483704505	-1.19315271784257	-1.20420612767407	-1.21425999345206	-2.67891099987134	0.437057736398543	1
Merged-chr3-79002661-4	chr3	79002569	79002769	+	986.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	142218.0	NM_001310536	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	4.0659898910951	4.7709754970188	3.47253837037387	4.07005961565702	3.53685772826063	4.22993607639417	2.75168416916856	3.29174227180703	-0.865193477489832	0.107438350260383	0.512752319754372
Merged-chr6-87255886-4	chr6	87255780	87255980	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_054041, exon 10 of 18)	exon (NM_054041, exon 10 of 18)	79895.0	NM_054041	69538.0	Mm.232525	NM_054041	ENSMUSG00000033420	Antxr1	2310008J16Rik|2810405N18Rik|Antrx1|Tem8	anthrax toxin receptor 1	protein-coding	-0.502391301462883	-1.04039839995914	-0.87744965639752	-1.05707889926824	-1.05990250840192	-1.03792484783103	-1.04922884438895	-1.0567292829056	-2.76361452834743	0.383169958961135	1
Merged-chr17-80127479-1	chr17	80127379	80127579	+	926.0	f0_c57.idr	promoter-TSS (NM_176963)	promoter-TSS (NM_176963)	8.0	NM_176963	319625.0	Mm.29098	NM_176963	ENSMUSG00000035473	Galm	A530057M15Rik|AU015645|AU020959	galactose mutarotase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28378556-4	chr7	28378463	28378663	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011756, intron 1 of 1)	CpG	665.0	NM_011756	22695.0	Mm.389856	NM_011756	ENSMUSG00000044786	Zfp36	Gos24|Nup475|TIS11D|TISII|Tis11|Ttp|Zfp-36	zinc finger protein 36	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-14682982-5	chr18	14682898	14683098	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161369)	promoter-TSS (NM_001161369)	-84.0	NM_001161371	268996.0	Mm.31761	NM_009280	ENSMUSG00000037013	Ss18	D130059H17|Ssxt|Syt	SS18, nBAF chromatin remodeling complex subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-7800240-3	chr6	7800140	7800340	+	980.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	-44984.0	NM_052993	94192.0	Mm.102752	NM_052993	ENSMUSG00000042460	C1galt1	2210410E06Rik|AV284120|T-synthase	core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-92828275-2	chr16	92828175	92828375	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2201.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-55465451-2	chr13	55465351	55465551	+	801.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001030296, intron 1 of 2)	intron (NM_001030296, intron 1 of 2)	1184.0	NM_001030296	432763.0	Mm.315457	NM_001030296	ENSMUSG00000034686	Prr7	XM_484263	proline rich 7 (synaptic)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-118777062-2	chr3	118776962	118777162	+	657.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_170778, intron 4 of 22)	Lx2B|LINE|L1	214882.0	NM_170778	99586.0	Mm.27907	NM_170778	ENSMUSG00000033308	Dpyd	AI315208|DHPDHase|DPD|E330028L06Rik	dihydropyrimidine dehydrogenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-59741707-4	chr10	59741571	59741771	+	925.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359267, intron 4 of 11)	intron (NM_001359267, intron 4 of 11)	39108.0	NM_001291443	216001.0	Mm.27199	NM_144822	ENSMUSG00000020111	Micu1	C730016L05Rik|Calc|Cbara1	mitochondrial calcium uptake 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-160673626-3	chr2	160673538	160673738	+	644.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009408, intron 3 of 20)	MTD|LTR|ERVL-MaLR	27741.0	NM_009408	21969.0	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-87750768-2	chr11	87750668	87750868	+	556.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6096.0	NR_029555	387160.0		NR_029555	ENSMUSG00000105196	Mir142	Mirn142|miR-142|mir-142a|mmu-mir-142|mmu-mir-142a	microRNA 142	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-82629277-4	chr10	82629166	82629366	+	964.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011561)	promoter-TSS (NM_011561)	-572.0	NM_001358517	21665.0	Mm.284252	NM_011561	ENSMUSG00000034674	Tdg	E130317C12Rik|JZA-3|Jza1	thymine DNA glycosylase	protein-coding	3.34087543969876	3.10700866446596	3.9920106930202	2.92140813802451	3.22874892182886	3.00907784714974	3.69949544888188	2.70669931146312	-0.333845938193254	0.586986417920101	0.967957151188163
Merged-chr10-127579829-6	chr10	127579604	127579804	+	841.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 20 of 88)	intron (NM_008512, intron 20 of 88)	41444.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-44383728-2	chr10	44383628	44383828	+	993.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	24052.0	NR_035450	100316688.0		NR_035450	ENSMUSG00000089260	Mir1929	mir-1929|mmu-mir-1929	microRNA 1929	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-120004744-2	chr9	120004644	120004844	+	767.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	18854.0	NM_011724	22437.0	Mm.10117	NM_011724	ENSMUSG00000079243	Xirp1	AI415219|Cmya1	xin actin-binding repeat containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-12473911-4	chr13	12473808	12474008	+	947.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_133643, exon 6 of 6)	3' UTR (NM_133643, exon 6 of 6)	-12170.0	NM_001291057	56048.0	Mm.474138	NM_018886	ENSMUSG00000057554	Lgals8	1200015E08Rik|AI326142|D13Ertd524e|Lgals-8	lectin, galactose binding, soluble 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-121196964-4	chr5	121196854	121197054	+	993.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5557.0	NM_011202	19247.0	Mm.8681	NM_011202	ENSMUSG00000043733	Ptpn11	2700084A17Rik|AW536184|PTP1D|PTP2C|SAP-2|SH-PTP2|SH-PTP3|SHP-2|Shp2|Syp	protein tyrosine phosphatase, non-receptor type 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53161932-2	chr4	53161832	53162032	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2037.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-17567328-2	chr17	17567228	17567428	+	754.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_172827, intron 7 of 17)	intron (NM_172827, intron 7 of 17)	57161.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	-0.923772569202306	-0.562996481634052	-0.918041984271448	-0.920200216076014	-0.447857768560961	-0.907094860507239	-0.917424159035726	-0.919823515043604	0.61021457578152	0.845890823634888	1
Merged-chr7-66137814-3	chr7	66137692	66137892	+	721.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081163, intron 2 of 2)	intron (NM_001081163, intron 2 of 2)	28277.0	NM_001081163	269941.0	Mm.333916	NM_001081163	ENSMUSG00000032640	Chsy1	mKIAA0990	chondroitin sulfate synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-35097066-4	chr4	35096956	35097156	+	996.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178061, intron 1 of 3)	intron (NM_178061, intron 1 of 3)	-54999.0	NM_199157	387510.0	Mm.386929	NM_199157	ENSMUSG00000042993	Ifnk	-	interferon kappa	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-120287361-2	chr4	120287261	120287461	+	818.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_194060)	promoter-TSS (NM_194060)	-100.0	NM_194060	329934.0	Mm.277090	NM_194060	ENSMUSG00000052135	Foxo6	-	forkhead box O6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-84683754-4	chr18	84683665	84683865	+	800.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023149, intron 1 of 11)	B2_Mm2|SINE|B2	-1706.0	NM_001289531	66054.0	Mm.29646	NM_023149	ENSMUSG00000024644	Cndp2	0610010E05Rik|C76600|Cn2|Dip-2|Pep-1|Pep1	CNDP dipeptidase 2 (metallopeptidase M20 family)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-116726229-4	chr10	116726127	116726327	+	982.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045345, intron 1 of 2)	intron (NR_045345, intron 1 of 2)	2950.0	NR_045345	72286.0	Mm.396207	NR_045345	ENSMUSG00000100198	1700030O20Rik	-	RIKEN cDNA 1700030O20 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-88108977-1	chr6	88108877	88109077	+	643.0	f1_c57bl6.idr	Intergenic	Intergenic	-4719.0	NR_105795	102465196.0		NR_105795	ENSMUSG00000099095	Mir6376	Gm27778|mmu-mir-6376	microRNA 6376	ncRNA	-1.09767014501538	-1.0756624850493	-0.512591899128158	-1.09427141482573	-0.9475180626469	-1.07317923123506	-1.08452756396257	-1.09391344974982	-1.77250465997347	0.581527481992691	1
Merged-chr17-24732500-2	chr17	24732400	24732600	+	986.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025425)	promoter-TSS (NM_025425)	-185.0	NM_025425	66211.0	Mm.46198	NM_025425	ENSMUSG00000002500	Rpl3l	1110057H16Rik	ribosomal protein L3-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-43840459-2	chr5	43840359	43840559	+	658.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_009763, exon 8 of 9)	exon (NM_009763, exon 8 of 9)	21566.0	NM_009763	12182.0	Mm.246332	NM_009763	ENSMUSG00000029082	Bst1	114/A10|A530073F09|BP-3|Bp3|Bsta1|CD157|Ly65	bone marrow stromal cell antigen 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-21976552-4	chr10	21976457	21976657	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161845, intron 3 of 13)	intron (NM_001161845, intron 3 of 13)	-2115.0	NM_001161847	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-49093740-3	chr7	49093638	49093838	+	843.033325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111016, intron 2 of 38)	intron (NM_001111016, intron 2 of 38)	68420.0	NR_154465	108167511.0	Mm.400599	NR_154465		9130015G15Rik	-	RIKEN cDNA 9130015G15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-78736357-2	chr4	78736263	78736463	+	840.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	142316.0	NR_131142	623726.0		NR_131142		A430085M09Rik	EG623726	RIKEN cDNA A430085M09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-18948584-2	chr8	18948484	18948684	+	610.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001286469, exon 2 of 7)	exon (NM_001286469, exon 2 of 7)	2287.0	NM_001286469	319581.0	Mm.111354	NM_176951	ENSMUSG00000039814	Xkr5	5430438H03Rik|XRG5	X-linked Kx blood group related 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-87430331-2	chr11	87430231	87430431	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199293, intron 1 of 30)	B3|SINE|B2	2740.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-121004849-4	chr4	121004728	121004928	+	962.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133716, intron 1 of 9)	intron (NM_133716, intron 1 of 9)	12419.0	NM_133716	69780.0	Mm.271819	NM_133716	ENSMUSG00000032870	Smap2	1810031K02Rik|AA408614|Smap1l	small ArfGAP 2	protein-coding	4.49309428743589	2.97277986269606	4.68256186586878	3.81371064349285	3.58529479244773	3.27297381228116	2.72785984504563	4.06871855607933	-0.900832399192684	0.113054820305194	0.52650449242973
Merged-chr8-13200559-4	chr8	13200445	13200645	+	876.68335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025768)	promoter-TSS (NM_025768)	79.0	NM_025768	66790.0	Mm.34901	NM_025768	ENSMUSG00000038515	Grtp1	5430401C05Rik|C81211|Tbc1d6	GH regulated TBC protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-43531077-2	chr19	43530977	43531177	+	804.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6472.0	NM_010324	14718.0	Mm.19039	NM_010324	ENSMUSG00000025190	Got1	AI789014|Got-1|cAspAT|cCAT	glutamic-oxaloacetic transaminase 1, soluble	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-81864731-1	chr7	81864631	81864831	+	544.0	f1_c57bl6.idr	intron (NM_001291282, intron 2 of 9)	A-rich|Low_complexity|Low_complexity	2044.0	NM_001291282	107769.0	Mm.221412	NM_145375	ENSMUSG00000038623	Tm6sf1	AI428514|BC023123|C630016D09Rik	transmembrane 6 superfamily member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-139214124-4	chr4	139214022	139214222	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	20011.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	6.35566390177147	5.82357931406179	6.47138176199879	5.97966522637651	4.90505723632776	5.32846871715577	4.82738128181483	5.98545671304557	-0.939784473887303	0.00176490541865554	0.0304877384768207
Merged-chr11-118455716-5	chr11	118455659	118455859	+	886.8599849999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045902)	promoter-TSS (NR_045902)	-764.0	NR_045902	100126224.0	Mm.441989	NR_045902	ENSMUSG00000086514	Gm11747	-	predicted gene 11747	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-33761257-2	chr17	33761157	33761357	+	773.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008997)	promoter-TSS (NM_008997)	-771.0	NM_008997	19326.0	Mm.387587	NM_008997	ENSMUSG00000077450	Rab11b	A730055L17Rik	RAB11B, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-116681670-4	chr6	116681571	116681771	+	952.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7835.0	NM_178045	213391.0	Mm.257931	NM_178045	ENSMUSG00000042129	Rassf4	3830411C14Rik|AD037|AI586137	Ras association (RalGDS/AF-6) domain family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-67768513-4	chr18	67768341	67768541	+	995.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6435.0	NM_001360934	72124.0	Mm.307315	NM_028112	ENSMUSG00000079614	Seh1l	2610007A16Rik|AW540070|SEC13L|SEH1A|SEH1B|Seh1	SEH1-like (S. cerevisiae	protein-coding	2.52365569804919	1.57246325465892	2.73836903662497	3.16342949956588	2.54487520396782	2.45927603829534	3.20503387992623	3.03457563385691	0.42242046905542	0.591171877604579	0.969855996467603
Merged-chr8-4312271-3	chr8	4312168	4312368	+	877.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010485, intron 1 of 5)	ORR1D2|LTR|ERVL-MaLR	12832.0	NM_010485	15568.0	Mm.119162	NM_010485	ENSMUSG00000040028	Elavl1	2410055N02Rik|HUR|Hua|W91709	ELAV (embryonic lethal, abnormal vision)-like 1 (Hu antigen R)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-128333115-4	chr7	128333008	128333208	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34977.0	NM_145590	233913.0	Mm.220880	NM_145590	ENSMUSG00000030780	BC017158	-	cDNA sequence BC017158	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-12440090-2	chr15	12439990	12440190	+	574.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081064, intron 4 of 23)	intron (NM_001081064, intron 4 of 23)	118594.0	NM_025673	66629.0	Mm.157655	NM_025673	ENSMUSG00000022200	Golph3	4733401N08Rik|5730410D03Rik|AW413496	golgi phosphoprotein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-68175284-4	chr8	68175199	68175399	+	815.700012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR25A|LTR|ERVK	-101229.0	NM_028182	72281.0	Mm.40974	NM_028182	ENSMUSG00000053886	Sh2d4a	2210402M20Rik|SH2A	SH2 domain containing 4A	protein-coding	2.69573120442762	2.5426074678813	2.45479720199027	1.59584486936323	2.27788030623113	3.04916862985228	2.68813781924473	1.34941206596107	0.204499975926304	0.823882792753089	0.998431161219273
Merged-chr6-124915246-2	chr6	124915146	124915346	+	601.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026988, intron 1 of 4)	intron (NM_026988, intron 1 of 4)	-1617.0	NR_152158	442825.0	Mm.446713	NR_152158	ENSMUSG00000055818	A230083G16Rik	-	RIKEN cDNA A230083G16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-21010048-2	chr17	21009948	21010148	+	613.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145483, intron 1 of 4)	intron (NM_145483, intron 1 of 4)	1107.0	NM_145483	224585.0	Mm.296036	NM_145483	ENSMUSG00000067942	Zfp160	6720480D16Rik|F11|HKr18|HZF5|KR18|mKIAA1611|mszf47	zinc finger protein 160	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-35574400-2	chr9	35574300	35574500	+	551.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4331.0	NM_029762	76832.0	Mm.482285	NM_029762	ENSMUSG00000050555	Hyls1	3010015K02Rik	HYLS1, centriolar and ciliogenesis associated	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-54566961-4	chr9	54566861	54567061	+	765.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6882.0	NM_019686	56506.0	Mm.42192	NM_019686	ENSMUSG00000037493	Cib2	2810434I23Rik|AI449053	calcium and integrin binding family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-126130986-2	chr4	126130886	126131086	+	559.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028800, intron 6 of 10)	intron (NM_028800, intron 6 of 10)	-17017.0	NM_172145	230752.0	Mm.41569	NM_172145	ENSMUSG00000050212	Eva1b	2610027C15Rik|Fam176b	eva-1 homolog B (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-45909510-2	chr9	45909410	45909610	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001281934, exon 3 of 17)	exon (NM_001281934, exon 3 of 17)	-2599.0	NM_001361112	235315.0	Mm.220945	NM_178709	ENSMUSG00000042790	Rnf214	D130054N24Rik	ring finger protein 214	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-75142692-4	chr1	75142528	75142728	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001305232)	promoter-TSS (NM_001305232)	83.0	NM_026977	69171.0	Mm.28193	NM_026977	ENSMUSG00000033159	Cnppd1	1810031K17Rik|AU043960	cyclin Pas1/PHO80 domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-193876553-4	chr1	193876439	193876639	+	841.337524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	346220.0	NR_040477	74942.0	Mm.60689	NR_040477	ENSMUSG00000103692	4930503O07Rik	-	RIKEN cDNA 4930503O07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-61451726-4	chr10	61451632	61451832	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010124, intron 1 of 2)	intron (NM_010124, intron 1 of 2)	937.0	NM_010124	13688.0	Mm.259516	NM_010124	ENSMUSG00000020091	Eif4ebp2	2810011I19Rik|4E-BP2|AA792569|BC010348|PHAS-II	eukaryotic translation initiation factor 4E binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-63074351-2	chr14	63074251	63074451	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	19278.0	NR_046019	72609.0	Mm.387101	NR_046019		2700070H01Rik	-	RIKEN cDNA 2700070H01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41973976-2	chr19	41973878	41974078	+	749.75	f0_balb.idr|f0_c57.idr	intron (NM_028152, intron 1 of 30)	intron (NM_028152, intron 1 of 30)	7158.0	NM_028152	72199.0	Mm.218940	NM_028152	ENSMUSG00000025159	Mms19	2410001K24Rik|2610042O15Rik|AI316855|C79368|C86341|Mms19l	MMS19 (MET18 S. cerevisiae)	protein-coding	2.40184199785054	0.997401947700682	1.56759887164094	2.07015531511797	1.30779609809756	1.00203014582472	1.72344757610361	1.37228607922983	-1.52931312061954	0.204510108242757	0.69170614885264
Merged-chr4-55776649-2	chr4	55776549	55776749	+	784.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-244174.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-30654658-2	chr7	30654555	30654755	+	922.2999880000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_027999, intron 17 of 18)	intron (NM_027999, intron 17 of 18)	-4427.0	NM_133693	68035.0	Mm.401747	NM_133693	ENSMUSG00000036733	Rbm42	1700003D06Rik|3100004P22Rik	RNA binding motif protein 42	protein-coding	0.732265535335559	0.811658059775048	1.05594008372904	1.0224921575747	0.973013028199294	2.59807825815155	2.19176854943954	1.69850909291607	3.95598600276947	0.00512413008912636	0.0682092967559224
Merged-chr2-91135859-2	chr2	91135759	91135959	+	792.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008653, exon 30 of 32)	exon (NM_008653, exon 30 of 32)	17715.0	NM_008653	17868.0	Mm.10728	NM_008653	ENSMUSG00000002100	Mybpc3	-	myosin binding protein C, cardiac	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-126497002-4	chr2	126496912	126497112	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359975, intron 1 of 27)	intron (NM_001359975, intron 1 of 27)	2835.0	NM_001359975	241633.0	Mm.222235	NM_001080944	ENSMUSG00000060131	Atp8b4	Im	ATPase, class I, type 8B, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-45881235-2	chr11	45881135	45881335	+	707.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001045520, intron 1 of 11)	intron (NM_001045520, intron 1 of 11)	29271.0	NM_001045520	216705.0	Mm.169673	NM_001045520	ENSMUSG00000006169	Clint1	AI642036|AW537616|C530049I24Rik|Enth|Epn4|F630206G17Rik|mKIAA0171	clathrin interactor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-76199619-3	chr16	76199603	76199803	+	706.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	77090.0	NR_040575	78215.0	Mm.243885	NR_040575		4930578N18Rik	-	RIKEN cDNA 4930578N18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-49983077-4	chr11	49982995	49983195	+	845.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4b|LINE|L1	-42236.0	NM_021540	59044.0	Mm.359004	NM_021540	ENSMUSG00000020376	Rnf130	2510042A13Rik|G1RZFP|G1rp|GOLIATH|GP	ring finger protein 130	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-182282753-4	chr1	182282647	182282847	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360783)	promoter-TSS (NM_001360783)	54.0	NM_007853	13244.0	Mm.29648	NM_007853	ENSMUSG00000038633	Degs1	AA536663|Degs|Des1|Mdes	delta(4)-desaturase, sphingolipid 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-20017742-4	chr3	20017636	20017836	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080634, intron 8 of 16)	intron (NM_080634, intron 8 of 16)	17574.0	NM_001146324	12807.0	Mm.291533	NM_080634	ENSMUSG00000027615	Hps3	coa	HPS3, biogenesis of lysosomal organelles complex 2 subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-50553142-2	chr9	50553042	50553242	+	878.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133217, intron 1 of 11)	intron (NM_133217, intron 1 of 11)	520.0	NM_001359610	170752.0	Mm.390149	NM_133217	ENSMUSG00000032066	Bco2	B-diox-II|Bcdo2|Bcmo2|CMO2	beta-carotene oxygenase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-123548297-3	chr4	123548210	123548410	+	772.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199137, intron 2 of 92)	intron (NM_001199137, intron 2 of 92)	-68110.0	NR_105824	102465214.0		NR_105824	ENSMUSG00000099005	Mir6398	Gm27657|mmu-mir-6398	microRNA 6398	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-130657294-2	chr7	130657194	130657394	+	766.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001004468, intron 3 of 21)	intron (NM_001004468, intron 3 of 21)	-35262.0	NM_001347637	57752.0	Mm.86322	NM_021314	ENSMUSG00000030852	Tacc2	mKIAA4180	transforming, acidic coiled-coil containing protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-111895035-3	chr13	111894954	111895154	+	791.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TCC)n|Simple_repeat|Simple_repeat	27118.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-89295020-2	chr15	89294920	89295120	+	559.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081030, intron 30 of 39)	intron (NM_001081030, intron 30 of 39)	10712.0	NR_105924	102465981.0		NR_105924	ENSMUSG00000098442	Mir6959	Gm27807|mmu-mir-6959	microRNA 6959	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-34005889-3	chr6	34005791	34005991	+	770.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23557.0	NM_028886	74354.0	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-13658550-1	chr1	13658450	13658650	+	546.0	f1_c57bl6.idr	intron (NM_145381, intron 1 of 6)	L2c|LINE|L2	1959.0	NM_145381	212442.0	Mm.89572	NM_145381	ENSMUSG00000025937	Lactb2	Cgi-83|E430032H21Rik	lactamase, beta 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-23369871-2	chr16	23369771	23369971	+	612.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59262.0	NM_001004151	239766.0	Mm.208751	NM_001004151	ENSMUSG00000033383	Rtp1	Gm1766|Gm604	receptor transporter protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-145871782-1	chr2	145871682	145871882	+	911.6666869999999	f0_balb.idr	intron (NM_028724, intron 9 of 12)	intron (NM_028724, intron 9 of 12)	-31459.0	NM_026425	67877.0	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	-1.29633872064033	-1.26720680975202	-1.27768629845203	-1.28629446248818	-0.70879630402184	-1.2649358608345	-1.2753139719142	-1.28475360524138	2.50884260628271	0.468217847016783	1
Merged-chr14-76287396-3	chr14	76287262	76287462	+	785.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35900.0	NR_152108	72893.0	Mm.233565	NR_152108		2900040C04Rik	-	RIKEN cDNA 2900040C04 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-30601360-4	chr3	30601260	30601460	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030557)	promoter-TSS (NM_030557)	-727.0	NM_001289623	80732.0	Mm.200378	NM_030557	ENSMUSG00000037730	Mynn	2810011C24Rik|AA415053|AI661031|AW049392|Mynr|SBBIZ1	myoneurin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102430124-5	chr12	102430094	102430294	+	949.048767	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011175, intron 1 of 13)	CT-rich|Low_complexity|Low_complexity	9619.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0.991540086697005	1.09737871168814	0.839161067028547	1.89063034941803	1.29749462183098	1.85778780832545	0.842928966931306	1.8155019845373	0.774720905154908	0.562086041541109	0.960362415684079
Merged-chr15-62351547-4	chr15	62351437	62351637	+	950.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-132086.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	-0.324316434378791	-0.150231989431862	-0.318278543306815	0.0414521420671744	-0.323762472125342	-0.146189326020768	-0.317620399831492	0.0463981273704396	0.0318189705940532	0.989350114909773	1
Merged-chr6-29762727-3	chr6	29762625	29762825	+	911.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5718.0	NM_021414	74340.0	Mm.210899	NM_021414	ENSMUSG00000029772	Ahcyl2	4631427C17Rik|AI227036|Adohcyase3|mKIAA0828	S-adenosylhomocysteine hydrolase-like 2	protein-coding	0.587772984971774	0.623982511251534	0.151360549118277	0.55019177138863	0.503505803759861	0.157885013540087	0.152532786618538	0.147981386776085	-1.87941484982456	0.358782607167264	1
Merged-chr16-97462996-4	chr16	97462896	97463096	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010846)	promoter-TSS (NM_010846)	-90.0	NR_003520	17857.0	Mm.33996	NM_010846	ENSMUSG00000000386	Mx1	AI893580|Mx|Mx-1	MX dynamin-like GTPase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-37138933-4	chr10	37138805	37139005	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008538)	promoter-TSS (NM_008538)	21.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-133458900-4	chr2	133458788	133458988	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-93271.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-83656799-2	chr7	83656656	83656856	+	671.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360088, intron 12 of 18)	intron (NM_001360088, intron 12 of 18)	-1261.0	NM_001360089	16170.0	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	1.42301939426809	1.84162654571106	0.888234369193506	1.71477664568911	1.5386219082273	1.48709748807883	0.891620594710258	1.07881930258303	-0.864361858728249	0.50689596579663	0.942956808573505
Merged-chr14-55735996-4	chr14	55735888	55736088	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9696.0	NM_026819	52585.0	Mm.21623	NM_026819	ENSMUSG00000002332	Dhrs1	1110029G07Rik|AW112170|D14Ertd484e	dehydrogenase/reductase (SDR family) member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21139141-2	chr9	21139041	21139241	+	582.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_016742, exon 8 of 8)	3' UTR (NM_016742, exon 8 of 8)	-7866.0	NM_001205312	54721.0	Mm.20249	NM_018793	ENSMUSG00000032175	Tyk2	JTK1	tyrosine kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111401648-3	chr12	111401546	111401746	+	953.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5163.0	NM_001101503	380787.0	Mm.125602	NM_001101503	ENSMUSG00000087075	Lbhd2	A230065H16Rik|Gm898|Lbh2	LBH domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126757126-3	chr8	126757028	126757228	+	862.099976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-91892.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-170239256-5	chr2	170239198	170239398	+	868.2999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-96623.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-85577970-4	chr9	85577853	85578053	+	852.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	171381.0	NM_001081282	108837.0	Mm.22315	NM_175371	ENSMUSG00000035941	Ibtk	5430411K16Rik|AA409502|BTKI|mKIAA1417	inhibitor of Bruton agammaglobulinemia tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89817298-2	chr3	89817198	89817398	+	635.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-14072.0	NM_172530	214547.0	Mm.225	NM_172530	ENSMUSG00000046280	She	9430022A14	src homology 2 domain-containing transforming protein E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180421389-4	chr1	180421247	180421447	+	712.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081175, intron 7 of 7)	intron (NM_001081175, intron 7 of 7)	62157.0	NM_001081227	381310.0	Mm.44791	NM_001081227	ENSMUSG00000053963	Stum	6330403A02Rik|Gm10001|R75555	mechanosensory transduction mediator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36470319-2	chr1	36470219	36470419	+	756.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1278.0	NM_033570	94220.0	Mm.422638	NM_033570	ENSMUSG00000037408	Cnnm4	5430430O18Rik|Acdp4	cyclin M4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-57289901-2	chr17	57289801	57290001	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163816, intron 1 of 25)	intron (NM_001163816, intron 1 of 25)	10801.0	NM_001163815	22324.0	Mm.248172	NM_011691	ENSMUSG00000034116	Vav1	Vav|vav-T	vav 1 oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52577337-3	chr13	52577241	52577441	+	779.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4116.0	NR_046069	100040572.0	Mm.278873	NR_046069		Gm2848	-	predicted gene 2848	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-121159366-2	chr7	121159266	121159466	+	593.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_139310, intron 27 of 28)	intron (NM_139310, intron 27 of 28)	75928.0	NM_139310	246190.0	Mm.221073	NM_139310	ENSMUSG00000034990	Otoa	-	otoancorin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114669130-4	chr11	114669017	114669217	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001048058, intron 2 of 3)	CpG-2790	336.0	NM_001048058	67671.0	Mm.238817	NM_023372	ENSMUSG00000057322	Rpl38	0610025G13Rik|Rbt|Ts|Tss	ribosomal protein L38	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-158175193-4	chr2	158175111	158175311	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16797.0	NR_036606	73399.0	Mm.416861	NR_036606	ENSMUSG00000078957	1700060C20Rik	-	RIKEN cDNA 1700060C20 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70443162-2	chr11	70443062	70443262	+	926.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	4907.0	NR_106064	102465670.0		NR_106064	ENSMUSG00000099109	Mir7115	Gm27902|mmu-mir-7115	microRNA 7115	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-156425843-3	chr1	156425753	156425953	+	778.366638	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4938.0	NM_001346967	77352.0	Mm.428709	NM_001033180	ENSMUSG00000026601	Axdnd1	9430070O13Rik|Gm979	axonemal dynein light chain domain containing 1	protein-coding	-0.375269033747425	-0.148046842822012	-0.619894551678402	-0.622288879769406	-0.369205428849449	-0.616072182607796	-0.619208335889141	-0.621871284044096	-1.45044606468253	0.594808305303685	1
Merged-chr8-117325537-2	chr8	117325437	117325637	+	577.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	CT-rich|Low_complexity|Low_complexity	-23633.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-80264362-4	chr15	80264266	80264466	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175109)	promoter-TSS (NM_175109)	-60.0	NM_175109	66538.0	Mm.39485	NM_175109	ENSMUSG00000051518	Rps19bp1	2510038A11Rik|AI604923|S19BP	ribosomal protein S19 binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-79941141-4	chr15	79941033	79941233	+	860.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-8487.0	NM_144811	52609.0	Mm.323442	NM_144811	ENSMUSG00000053411	Cbx7	1600014J01Rik|AI851678|D15Ertd417e	chromobox 7	protein-coding	3.46487274153337	3.54589955641869	3.51576175393539	3.49882285155572	3.67903101496557	3.74358326895719	3.70072168176498	3.66250833135196	0.289919131659116	0.557192574770578	0.960321604678676
Merged-chr11-98842461-2	chr11	98842361	98842561	+	863.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080925, intron 3 of 14)	intron (NM_001080925, intron 3 of 14)	5676.0	NM_001080925	268480.0	Mm.340766	NM_001080925	ENSMUSG00000038020	Rapgefl1	B230105J10	Rap guanine nucleotide exchange factor (GEF)-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-118662696-4	chr9	118662605	118662805	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 7 of 27)	intron (NM_133721, intron 7 of 27)	-48987.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-148626997-4	chr4	148626877	148627077	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145556)	promoter-TSS (NM_145556)	19.0	NR_027864	230908.0	Mm.22453	NM_145556	ENSMUSG00000041459	Tardbp	1190002A23Rik|C85084|TDP-43|Tdp43	TAR DNA binding protein	protein-coding	5.83196261868371	5.92866322771482	6.5027646809874	5.74366632406788	6.31513620910472	5.27863859640104	6.3736253183098	6.03270798073272	0.0393017187805809	0.887566562559434	0.998431161219273
Merged-chr3-146449071-2	chr3	146448971	146449171	+	600.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-1396.0	NM_028836	74245.0	Mm.45396	NM_028836	ENSMUSG00000028189	Ctbs	2210401K11Rik|CTB	chitobiase, di-N-acetyl-	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-62815955-4	chr5	62815863	62816063	+	754.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170705, intron 1 of 8)	AmnSINE1|SINE|Deu	2140.0	NM_001170705	100322896.0	Mm.479821	NM_001170705	ENSMUSG00000090326	Dthd1	Gm17384	death domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141383399-2	chr7	141383299	141383499	+	559.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-8761.0	NM_011528	21351.0	Mm.29182	NM_011528	ENSMUSG00000025503	Taldo1	-	transaldolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-60211906-4	chr2	60211805	60212005	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020575, intron 1 of 9)	intron (NM_020575, intron 1 of 9)	1969.0	NM_020575	57438.0	Mm.260635	NM_020575	ENSMUSG00000026977	March7	Axo|Axot|Gtrgeo17	membrane-associated ring finger (C3HC4) 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-53141441-4	chr19	53141341	53141541	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164101, intron 1 of 13)	intron (NM_001164101, intron 1 of 13)	998.0	NM_001164101	27360.0	Mm.426080	NM_013758	ENSMUSG00000025026	Add3	AI463285|R75380	adducin 3 (gamma)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95977307-4	chr3	95977210	95977410	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-8200.0	NR_045872	668224.0	Mm.357766	NR_045872		Gm9054	EG668224	predicted gene 9054	ncRNA	0.511648490314617	0.548039864827429	0.536333024787106	0.888692329161527	1.44243205593162	1.59805487035303	0.753417635664292	0.894386966302559	3.18238253088994	0.0552421331359984	0.345445681045366
Merged-chr5-105706822-3	chr5	105706741	105706941	+	933.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178701, intron 1 of 2)	intron (NM_178701, intron 1 of 2)	6031.0	NM_178701	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	-0.341548005186802	-0.461950676844805	-0.465207319575118	-0.0758052411959477	-0.337922102115331	-0.461213633920307	-0.464490881199752	-0.0703859597097778	0.0318375429219428	0.989636970963125	1
Merged-chr15-26365613-4	chr15	26365500	26365700	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310774, intron 2 of 2)	intron (NM_001310774, intron 2 of 2)	56552.0	NM_001310774	211147.0	Mm.54257	NM_177597	ENSMUSG00000022269	March11	9630025C22	membrane-associated ring finger (C3HC4) 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-115319319-2	chr10	115319219	115319419	+	744.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A2|LTR|ERVL-MaLR	-3728.0	NM_024454	216344.0	Mm.21936	NM_024454	ENSMUSG00000020132	Rab21	9630024B22	RAB21, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-60979602-1	chr1	60979502	60979702	+	606.0	f0_balb.idr	intron (NM_017480, intron 1 of 4)	L2b|LINE|L2	1688.0	NM_017480	54167.0	Mm.42044	NM_017480	ENSMUSG00000026009	Icos	AILIM|CCLP|CRP-1|H4|Ly115	inducible T cell co-stimulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122643929-4	chr5	122643813	122644013	+	995.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011027)	promoter-TSS (NM_011027)	2.0	NM_001038887	18439.0	Mm.42026	NM_011027	ENSMUSG00000029468	P2rx7	AI467586|P2X(7)|P2X7R	purinergic receptor P2X, ligand-gated ion channel, 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-114611427-2	chr7	114611327	114611527	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	24930.0	NM_001289444	12310.0	Mm.4361	NM_007587	ENSMUSG00000030669	Calca	CA|CGRP-1|CGRP1|Calc|Calc1|Cgrp|Ct|Ctn	calcitonin/calcitonin-related polypeptide, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-79087397-4	chr2	79087266	79087466	+	935.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-168060.0	NM_010576	16401.0	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-64366537-1	chr13	64366437	64366637	+	567.0	f1_c57bl6.idr	exon (NM_009984, exon 6 of 8)	exon (NM_009984, exon 6 of 8)	3983.0	NM_009984	13039.0	Mm.930	NM_009984	ENSMUSG00000021477	Ctsl	1190035F06Rik|CatL|Ctsl1|MEP|fs|nkt	cathepsin L	protein-coding	-0.29945009443856	-0.931040587966656	-0.94071194156305	-0.942966506639519	-0.94614913967941	-0.928365189978891	-0.755656562522293	-0.942572777343402	-1.97248099745043	0.52351396827674	1
Merged-chr5-143546686-2	chr5	143546586	143546786	+	768.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2020.0	NM_133703	67238.0	Mm.383219	NM_026050	ENSMUSG00000083012	Fam220a	1500026F15Rik|2810453I06Rik|AW047776|Acpin1|Sipar	family with sequence similarity 220, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-154604892-2	chr2	154604792	154604992	+	668.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1219.0	NM_021534	59038.0	Mm.24673	NM_021534	ENSMUSG00000000876	Pxmp4	3010018P03Rik|Pmp24	peroxisomal membrane protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-120578196-2	chr9	120578096	120578296	+	868.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_073359)	TTS (NR_073359)	865.0	NR_073359	76100.0	Mm.48212	NR_073359	ENSMUSG00000052658	5830454E08Rik	-	RIKEN cDNA 5830454E08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-111022713-2	chr10	111022613	111022813	+	676.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12647.0	NM_172554	320150.0	Mm.339281	NM_172554	ENSMUSG00000035798	Zdhhc17	A230053P19Rik|BB187739|D130071N24Rik|DHHC-17|Hip14	zinc finger, DHHC domain containing 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180260173-2	chr1	180260073	180260273	+	906.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3873.0	NM_001128605	19165.0	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-107034961-4	chr3	107034841	107035041	+	957.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1221.0	NM_008418	16491.0	Mm.30640	NM_008418	ENSMUSG00000047959	Kcna3	Kca1-3|Kv1.3|Mk-3	potassium voltage-gated channel, shaker-related subfamily, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-66141131-2	chr2	66141046	66141246	+	573.25	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16353.0	NM_015736	14425.0	Mm.439760	NM_015736	ENSMUSG00000026994	Galnt3	-	polypeptide N-acetylgalactosaminyltransferase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132075426-4	chr4	132075328	132075528	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001128607)	promoter-TSS (NM_001128607)	-115.0	NM_001128607	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-118173710-2	chr14	118173610	118173810	+	557.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	36583.0	NM_021434	58245.0	Mm.275411	NM_021434	ENSMUSG00000022131	Gpr180	AB041545|E130016I23Rik|Itr	G protein-coupled receptor 180	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-51952624-2	chr13	51952524	51952724	+	769.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	105949.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127586378-3	chr10	127586284	127586484	+	852.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 15 of 88)	intron (NM_008512, intron 15 of 88)	34764.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	2.64598190495967	1.48678566689747	3.49562484715742	2.36096312402008	2.97051645357199	2.39003944190837	1.95323777226462	2.89323757574683	-0.161836088576922	0.850894810453614	0.998431161219273
Merged-chr13-47211295-2	chr13	47211195	47211395	+	996.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_146042, intron 2 of 7)	intron (NM_146042, intron 2 of 7)	17292.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141560561-3	chr7	141560433	141560633	+	862.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1647.0	NM_001357068	11772.0	Mm.253090	NM_007459	ENSMUSG00000002957	Ap2a2	2410074K14Rik|AF006990|AW146353|Adtab|C78001|L25	adaptor-related protein complex 2, alpha 2 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-142398176-4	chr7	142398059	142398259	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10289.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-66364093-4	chr5	66364005	66364205	+	858.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310626, intron 9 of 15)	intron (NM_001310626, intron 9 of 15)	-26440.0	NM_001201416	11787.0	Mm.5159	NM_009686	ENSMUSG00000029207	Apbb2	2310007D03Rik|FE65L1|Rirl1|TR2L|Zfra	amyloid beta (A4) precursor protein-binding, family B, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-32328307-3	chr19	32328207	32328407	+	991.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 2 of 9)	intron (NM_144792, intron 2 of 9)	21009.0	NM_001168525	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-140491111-3	chr6	140491025	140491225	+	848.805542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144920, intron 3 of 30)	intron (NM_144920, intron 3 of 30)	67026.0	NM_144920	109135.0	Mm.247670	NM_144920	ENSMUSG00000030231	Plekha5	2810431N21Rik|AI428202|AK129423|AMH-Cre|Ayu21-9|Gt(pU21)9Imeg|Pepp2|Tg(AMH-cre)1Flor	pleckstrin homology domain containing, family A member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-155049190-4	chr1	155049102	155049302	+	970.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34062.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-62560675-3	chr11	62560576	62560776	+	715.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	FordPrefect|DNA|hAT-Tip100	8945.0	NM_001313984	22187.0	Mm.371592	NM_011664	ENSMUSG00000019505	Ubb	AL033289|Rps27a|Uba52|Ubb2|Ubc	ubiquitin B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191849649-4	chr1	191849555	191849755	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28182.0	NM_010892	18005.0	Mm.33773	NM_010892	ENSMUSG00000026622	Nek2	AA617254|C77054	NIMA (never in mitosis gene a)-related expressed kinase 2	protein-coding	6.7282670154971	6.98750391034693	6.94159768070156	7.08591971674428	5.87362900043445	6.32035523737808	6.51661019685388	6.34704744397864	-0.708605479821659	0.000428812899925928	0.00990673396658142
Merged-chr7-141339345-2	chr7	141339245	141339445	+	886.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001282073)	promoter-TSS (NM_001282073)	343.0	NM_133191	98845.0	Mm.27451	NM_133191	ENSMUSG00000025504	Eps8l2	AI042819|AW545405|Eps8r2	EPS8-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-22008652-4	chr3	22008569	22008769	+	907.31665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-67983.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78298829-4	chr15	78298728	78298928	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001287389, intron 1 of 11)	intron (NM_001287389, intron 1 of 11)	6893.0	NM_007781	12984.0	Mm.1940	NM_007781	ENSMUSG00000071714	Csf2rb2	AIC2A|BetaIl3|Bil3|Csfgmrb|Il3r|Il3rb|Il3rb2	colony stimulating factor 2 receptor, beta 2, low-affinity (granulocyte-macrophage)	protein-coding	3.91243042110745	4.36557228148999	3.66244727504737	3.99657649897427	4.19607345004125	4.60873969643155	3.69179755370918	4.68030739130792	0.460447307976391	0.298384236006867	0.800257675359925
Merged-chr16-92801055-4	chr16	92800956	92801156	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111022, intron 2 of 6)	intron (NM_001111022, intron 2 of 6)	25018.0	NM_001111021	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96198488-2	chr3	96198388	96198588	+	667.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026975)	promoter-TSS (NM_026975)	-902.0	NM_026975	69168.0	Mm.104531	NM_026975	ENSMUSG00000015943	Bola1	1810037G04Rik	bolA-like 1 (E. coli)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117416840-2	chr10	117416740	117416940	+	832.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30595.0	NR_152734	102634600.0	Mm.399106	NR_152734	ENSMUSG00000112344	Gm32141	-	predicted gene, 32141	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-30749931-4	chr13	30749841	30750041	+	955.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347508, intron 1 of 8)	intron (NM_001347508, intron 1 of 8)	708.0	NM_013674	16364.0	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-44147883-4	chr1	44147769	44147969	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_011729, exon 1 of 15)	5' UTR (NM_011729, exon 1 of 15)	125.0	NM_011729	22592.0	Mm.2213	NM_011729	ENSMUSG00000026048	Ercc5	Xpg	excision repair cross-complementing rodent repair deficiency, complementation group 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-99284529-4	chr5	99284435	99284635	+	816.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31608.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-6193119-2	chr2	6193019	6193219	+	891.1666869999999	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040333)	promoter-TSS (NR_040333)	-132.0	NR_040333	320132.0	Mm.445891	NR_040333	ENSMUSG00000087125	A230108P19Rik	-	RIKEN cDNA A230108P19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-38442670-7	chr16	38442579	38442779	+	897.9523929999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9534.0	NM_134102	85031.0	Mm.279805	NM_134102	ENSMUSG00000002847	Pla1a	AA986889|Ps-pla1|Pspla1	phospholipase A1 member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-53558169-4	chr15	53558050	53558250	+	883.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177225, intron 4 of 4)	intron (NM_177225, intron 4 of 4)	56129.0	NR_039538	100628567.0		NR_039538	ENSMUSG00000104794	Mir28c	mmu-mir-28c	microRNA 28c	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84707438-4	chr8	84707338	84707538	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001081981, exon 11 of 11)	3' UTR (NM_001081981, exon 11 of 11)	5981.0	NM_008535	17095.0	Mm.4925	NM_008535	ENSMUSG00000034041	Lyl1	Lyl-1|bHLHa18	lymphoblastomic leukemia 1	protein-coding	-1.29633872064033	-1.26720680975202	-1.27768629845203	-1.28629446248818	-0.70879630402184	-1.2649358608345	-1.2753139719142	-1.28475360524138	2.50884260628271	0.468217847016783	1
Merged-chr5-103389605-4	chr5	103389496	103389696	+	996.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35596.0	NM_011204	19249.0	Mm.3414	NM_011204	ENSMUSG00000034573	Ptpn13	AI324989|PTP-BL|PTPL1|Ptpri|RIP	protein tyrosine phosphatase, non-receptor type 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-102061505-2	chr11	102061405	102061605	+	898.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_016695, exon 10 of 13)	exon (NM_016695, exon 10 of 13)	19994.0	NM_001160713	52685.0	Mm.266885	NM_027987	ENSMUSG00000017309	Cd300lg	2310016B05Rik|Clm9|D11Ertd736e	CD300 molecule like family member G	protein-coding	-2.05752322593321	-2.15521190974092	-2.16307242109104	-2.16952927915413	-2.17938029103484	-2.15350850414045	-2.16129297361887	-2.16837350464794	-0.683654500252594	0.846597994014493	1
Merged-chr2-136893733-2	chr2	136893633	136893833	+	598.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_028834, intron 1 of 7)	MIR|SINE|MIR	1565.0	NM_001355669	74243.0	Mm.330612	NM_028201	ENSMUSG00000027281	Slx4ip	2210009G21Rik|2410004I22Rik|C85661|Slxip	SLX4 interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-67364540-2	chr18	67364440	67364640	+	669.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007702, intron 3 of 4)	intron (NM_007702, intron 3 of 4)	-20437.0	NR_033214	338360.0	Mm.441590	NR_033214	ENSMUSG00000046415	B430212C06Rik	-	RIKEN cDNA B430212C06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-26244023-4	chr7	26243941	26244141	+	970.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22790.0	NM_001167540	100312477.0	Mm.480246	NM_001167540	ENSMUSG00000046130	Vmn1r184	-	vomeronasal 1 receptor, 184	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-106840116-4	chr4	106839946	106840146	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-35039.0	NM_001347159	329910.0	Mm.222956	NM_025590	ENSMUSG00000034853	Acot11	1110020M10Rik|2010309H15Rik|AW060409|BFIT|BFIT1|Thea|Them1|mKIAA0707	acyl-CoA thioesterase 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-35700555-2	chr5	35700455	35700655	+	735.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359895, intron 15 of 17)	intron (NM_001359895, intron 15 of 17)	-20775.0	NM_030127	78558.0	Mm.274255	NM_030127	ENSMUSG00000029096	Htra3	2210021K23Rik|9530081K03Rik|Prsp|Tasp	HtrA serine peptidase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-76605401-3	chr11	76605313	76605513	+	718.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-27674.0	NM_198894	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-63130548-1	chr1	63130448	63130648	+	576.0	f0_balb.idr	intron (NR_045914, intron 1 of 3)	B3|SINE|B2	15808.0	NR_045914	100380944.0	Mm.392955	NR_045914	ENSMUSG00000084799	Ino80dos	Gm11602	INO80 complex subunit D, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-36771739-4	chr3	36771654	36771854	+	920.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-81587.0	NM_019510	22065.0	Mm.74363	NM_019510	ENSMUSG00000027716	Trpc3	Mwk|Trcp3|Trp3|Trrp3	transient receptor potential cation channel, subfamily C, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75463044-4	chr11	75462920	75463120	+	970.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029739)	promoter-TSS (NR_029739)	-696.0	NR_029739	387141.0		NR_029739	ENSMUSG00000065529	Mir22	Mirn22|mmu-mir-22	microRNA 22	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-10500981-4	chr17	10500947	10501147	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027032, intron 4 of 4)	intron (NM_027032, intron 4 of 4)	44831.0	NR_077238	319750.0	Mm.383485	NR_077237	ENSMUSG00000089633	A230009B12Rik	-	RIKEN cDNA A230009B12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-63243048-3	chr10	63242832	63243032	+	887.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026101)	promoter-TSS (NM_026101)	-865.0	NM_030114	67345.0	Mm.234437	NM_026101	ENSMUSG00000020064	Herc4	1700056O17Rik|4921531D01Rik|9530080M15Rik|mKIAA1593	hect domain and RLD 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-131237218-2	chr2	131237118	131237318	+	603.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144888, intron 1 of 6)	B3|SINE|B2	3155.0	NM_144888	228607.0	Mm.287226	NM_144888	ENSMUSG00000037523	Mavs	D430028G21Rik|IPS-1|Visa|cardif	mitochondrial antiviral signaling protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-91235593-4	chr1	91235502	91235702	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6B|LTR|ERVK	-14702.0	NM_001355763	67921.0	Mm.337238	NM_026454	ENSMUSG00000034343	Ube2f	2510010F15Rik|AI851109	ubiquitin-conjugating enzyme E2F (putative)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-44735944-4	chr10	44735827	44736027	+	772.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-277179.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111484060-2	chr12	111483960	111484160	+	864.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001033248)	TTS (NM_001033248)	1763.0	NM_001033248	212539.0	Mm.81916	NM_001033248	ENSMUSG00000010529	Gm266	-	predicted gene 266	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-50059027-4	chr5	50058892	50059092	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133911)	promoter-TSS (NM_133911)	4.0	NM_133911	70693.0	Mm.272974	NM_133911	ENSMUSG00000029090	Adgra3	3830613O22Rik|AU044632|Gpr125|Tem5-like	adhesion G protein-coupled receptor A3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-29825464-4	chr6	29825351	29825551	+	878.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001171000, intron 1 of 16)	ORR1F|LTR|ERVL-MaLR	-28290.0	NM_001347084	74340.0	Mm.210899	NM_021414	ENSMUSG00000029772	Ahcyl2	4631427C17Rik|AI227036|Adohcyase3|mKIAA0828	S-adenosylhomocysteine hydrolase-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-114846186-2	chr13	114846086	114846286	+	815.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008396, intron 25 of 29)	intron (NM_008396, intron 25 of 29)	27949.0	NM_001113374	17434.0	Mm.19027	NM_013826	ENSMUSG00000015536	Mocs2	AI415403	molybdenum cofactor synthesis 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-32943576-1	chr12	32943476	32943676	+	608.0	f1_c57bl6.idr	intron (NR_044986, intron 2 of 5)	intron (NR_044986, intron 2 of 5)	10213.0	NR_044986	74076.0	Mm.50114	NR_044986	ENSMUSG00000097494	4933406C10Rik	-	RIKEN cDNA 4933406C10 gene	ncRNA	0.984918988338075	3.39982707261308	2.26544933733105	1.3263919347601	2.0805683342297	1.12385851773896	2.94397122529294	1.56657874627711	-0.49330098723932	0.662385200488163	0.991056031673253
Merged-chr18-77936574-1	chr18	77936474	77936674	+	542.0	f1_c57bl6.idr	Intergenic	Lx3B|LINE|L1	-1893.0	NM_001195633	100502841.0	Mm.297782	NM_001195633	ENSMUSG00000039840	Epg5	4732475F16|5430411K18Rik|AI661957|AW456499|mKIAA1632	ectopic P-granules autophagy protein 5 homolog (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-61673531-2	chr14	61673431	61673631	+	708.416626	f1_balb.idr|f1_c57bl6.idr	intron (NR_028264, intron 1 of 6)	URR1A|DNA|hAT-Charlie	8842.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-6213167-5	chr2	6213074	6213274	+	996.2666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024208)	promoter-TSS (NM_024208)	-180.0	NM_024208	67856.0	Mm.38342	NM_024208	ENSMUSG00000039063	Echdc3	2310005D12Rik|AI662097	enoyl Coenzyme A hydratase domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91927350-2	chr2	91927250	91927450	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_007699, exon 2 of 2)	exon (NM_007699, exon 2 of 2)	4352.0	NM_001291481	17242.0	Mm.906	NM_010784	ENSMUSG00000027239	Mdk	MK|Mek	midkine	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-91398812-4	chr1	91398695	91398895	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355152)	promoter-TSS (NM_001355152)	28.0	NM_023343	67444.0	Mm.337240	NM_023343	ENSMUSG00000026309	Ilkap	0710007A14Rik|1600009O09Rik|PP2C-DELTA	integrin-linked kinase-associated serine/threonine phosphatase 2C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-37653190-2	chr16	37653090	37653290	+	619.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026610, intron 1 of 2)	intron (NM_026610, intron 1 of 2)	1178.0	NM_026610	68194.0	Mm.379154	NM_026610	ENSMUSG00000022820	Ndufb4	0610006N12Rik|1300010H20Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-56936221-2	chr9	56936121	56936321	+	588.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1279.0	NM_133976	102462.0	Mm.12864	NM_133976	ENSMUSG00000032288	Imp3	1190002L16Rik|AI256594	IMP3, U3 small nucleolar ribonucleoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-92677320-2	chr1	92677220	92677420	+	630.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28479.0	NM_153114	260301.0	Mm.219545	NM_153114	ENSMUSG00000044055	Otos	OTOSP	otospiralin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-74577224-3	chr11	74577122	74577322	+	889.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001015046, intron 1 of 24)	intron (NM_001015046, intron 1 of 24)	12936.0	NM_001015046	380711.0	Mm.425690	NM_001015046	ENSMUSG00000038807	Rap1gap2	AU067654|Garnl4|Gm1561|mKIAA1039	RAP1 GTPase activating protein 2	protein-coding	-0.104014307467549	-0.226087929046356	-0.23017292645588	-0.233312911495719	0.0187445217282376	0.117161750744012	0.320084525841812	-0.232765097508501	2.80823114735575	0.216733391787639	1
Merged-chr8-46639227-4	chr8	46639153	46639353	+	999.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009810, exon 7 of 7)	3' UTR (NM_009810, exon 7 of 7)	21962.0	NM_009810	12367.0	Mm.34405	NM_009810	ENSMUSG00000031628	Casp3	A830040C14Rik|AC-3|CASP-3|CC3|CPP-32|CPP32|Caspase-3|Lice|SCA-1|Yama|mldy	caspase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-58462793-2	chr16	58462693	58462893	+	739.099976	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356484, intron 13 of 15)	intron (NM_001356484, intron 13 of 15)	54258.0	NM_028523	73379.0	Mm.373589	NM_028523	ENSMUSG00000035107	Dcbld2	1700055P21Rik|AW146002|CLCP1|Esdn	discoidin, CUB and LCCL domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-171017025-6	chr1	171016967	171017167	+	918.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1859.0	NM_144559	246256.0	Mm.251254	NM_144559	ENSMUSG00000059089	Fcgr4	4833442P21Rik|CD16-2|FcgRIV|FcgammaRIV|Fcgr3a|Fcrl3	Fc receptor, IgG, low affinity IV	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-72240208-3	chr7	72240109	72240309	+	706.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024703, intron 4 of 22)	intron (NM_001024703, intron 4 of 22)	66386.0	NM_001024703	244049.0	Mm.217412	NM_001024703	ENSMUSG00000032776	Mctp2	Gm489	multiple C2 domains, transmembrane 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27908772-6	chr17	27908658	27908858	+	897.388916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286040)	promoter-TSS (NM_001286040)	484.0	NM_026836	68776.0	Mm.267998	NM_026836	ENSMUSG00000024218	Taf11	1110038O14Rik|AI115401|AL024207|AW552398|PRO214|TAF2I|TAFII28	TATA-box binding protein associated factor 11	protein-coding	-0.856573398452917	-0.845326538716436	-0.850419824236107	-0.852736118784894	-0.473986530886472	-0.344689557878814	-0.849757022020733	-0.852331722485919	3.07321281652207	0.302799192379468	1
Merged-chr7-44136416-4	chr7	44136321	44136521	+	941.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008454)	promoter-TSS (NM_008454)	-869.0	NM_008454	16615.0	Mm.440887	NM_008454	ENSMUSG00000038968	Klk1b16	Klk16|mGk-16	kallikrein 1-related peptidase b16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-84862128-4	chr4	84862024	84862224	+	996.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-22185.0	NM_175275	338349.0	Mm.440562	NM_175275	ENSMUSG00000038070	Cntln	AI448092|B430108F07Rik|D530005L17Rik	centlein, centrosomal protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-118772331-1	chr2	118772231	118772431	+	606.5	f0_c57.idr	promoter-TSS (NM_001145644)	promoter-TSS (NM_001145644)	-438.0	NM_001145644	53906.0	Mm.36777	NM_025308	ENSMUSG00000046804	Phgr1	1810007E14Rik|AA238765	proline/histidine/glycine-rich 1	protein-coding	-0.400607864800125	-0.392121035747358	-0.394937726263816	-0.14017418402185	-0.171605926297875	-0.391481237086736	-0.241726195958694	-0.033190734193709	1.50124439861325	0.538518966050226	1
Merged-chr5-32854335-4	chr5	32854230	32854430	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_194340)	promoter-TSS (NM_194340)	-100.0	NM_194340	215476.0	Mm.248721	NM_194340	ENSMUSG00000054280	Prr14l	6030436E02Rik|C330019G07Rik|Prl14l	proline rich 14-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-12957489-4	chr10	12957357	12957557	+	893.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029075, intron 1 of 2)	intron (NM_029075, intron 1 of 2)	6802.0	NM_029075	74732.0	Mm.248648	NM_029075	ENSMUSG00000039232	Stx11	5830405C08Rik	syntaxin 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-31452344-2	chr15	31452148	31452348	+	715.75	f0_balb.idr|f1_balb.idr	intron (NM_145852, intron 1 of 4)	intron (NM_145852, intron 1 of 4)	1441.0	NM_145852	252967.0	Mm.436668	NM_145852	ENSMUSG00000022236	Ropn1l	ASP|AV047578|Akapasp	ropporin 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-34689912-3	chr8	34689810	34690010	+	995.2777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER88|LTR|ERVL	-49594.0	NR_040706	330734.0	Mm.149998	NR_040706	ENSMUSG00000109819	B930018H19Rik	B930018H19	RIKEN cDNA B930018H19 gene	ncRNA	4.68672906515346	4.56295005495721	5.42032069215482	4.907728029601	3.08987842905763	2.76239764197201	4.39786323831585	4.03306921883701	-1.54637285760156	0.00100194932090214	0.0196000890524736
Merged-chr9-83537295-2	chr9	83537195	83537395	+	601.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-11043.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-4307964-2	chr9	4307864	4308064	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_136940, intron 2 of 5)	intron (NR_136940, intron 2 of 5)	1530.0	NM_026276	67618.0	Mm.33970	NM_026276	ENSMUSG00000025894	Aasdhppt	2010309J24Rik|2810407B07Rik|AASD-PPT|CGI-80|LYS2|LYS5	aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-7766808-3	chr9	7766720	7766920	+	812.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152989, intron 1 of 5)	intron (NR_152989, intron 1 of 5)	2655.0	NR_152989	71929.0	Mm.283293	NM_133739	ENSMUSG00000050912	Tmem123	2310075C12Rik	transmembrane protein 123	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99957607-3	chr7	99957505	99957705	+	812.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175388, intron 1 of 5)	intron (NM_175388, intron 1 of 5)	22853.0	NM_175388	108937.0	Mm.323087	NM_175388	ENSMUSG00000058761	Rnf169	2900057K09Rik	ring finger protein 169	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32236048-2	chr2	32235948	32236148	+	715.666687	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145145)	promoter-TSS (NM_145145)	-635.0	NM_145145	99011.0	Mm.31192	NM_145145	ENSMUSG00000039254	Pomt1	AI505244	protein-O-mannosyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-88375035-2	chr10	88374935	88375135	+	651.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4377.0	NM_001004164	432486.0	Mm.335190	NM_001004164	ENSMUSG00000035311	Gnptab	EG432486|mKIAA1208	N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-17276812-3	chr16	17276742	17276942	+	954.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177473, exon 3 of 10)	exon (NM_177473, exon 3 of 10)	542.0	NM_177473	224019.0	Mm.246388	NM_177473	ENSMUSG00000055692	Tmem191c	4933405M22Rik|D16Bwg1494e|MNCb-4137	transmembrane protein 191C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120127123-2	chr8	120127023	120127223	+	809.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_172286, intron 1 of 12)	intron (NM_172286, intron 1 of 12)	12971.0	NM_001163761	234797.0	Mm.101958	NM_172286	ENSMUSG00000031824	6430548M08Rik	AW049007|Kiaa0513|mKIAA0513	RIKEN cDNA 6430548M08 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-122234827-4	chr2	122234744	122234944	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146126)	promoter-TSS (NM_146126)	5.0	NM_146126	20322.0	Mm.371580	NM_146126	ENSMUSG00000027227	Sord	Sdh-1|Sdh1|Sodh-1	sorbitol dehydrogenase	protein-coding	2.58681747392935	2.40846600468398	3.39611421577674	2.39687434016782	1.85376842407406	2.57161529434806	2.48594472119453	2.9956186837673	-0.463669808654786	0.553180515751232	0.959658647102134
Merged-chr2-14231061-3	chr2	14230935	14231135	+	885.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008625, intron 1 of 29)	intron (NM_008625, intron 1 of 29)	1621.0	NM_008625	17533.0	Mm.2019	NM_008625	ENSMUSG00000026712	Mrc1	AW259686|CD206|MR	mannose receptor, C type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-29541192-2	chr6	29541092	29541292	+	700.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001347079, exon 23 of 23)	3' UTR (NM_001347079, exon 23 of 23)	11910.0	NM_001252382	27056.0	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-51830834-2	chr13	51830734	51830934	+	845.1666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15841.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95014854-4	chr3	95014762	95014962	+	932.491699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357863, intron 1 of 8)	CpG	376.0	NM_030074	78266.0	Mm.389478	NM_030074	ENSMUSG00000019338	Zfp687	4931408L03Rik|Znf687|mKIAA1441	zinc finger protein 687	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-34838488-4	chr1	34838380	34838580	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160236, intron 1 of 6)	ORR1B1|LTR|ERVL-MaLR	4570.0	NM_174997	214469.0	Mm.120151	NM_174997	ENSMUSG00000037503	Fam168b	Mani|mKIAA4042	family with sequence similarity 168, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-5038419-4	chr7	5038305	5038505	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039532)	promoter-TSS (NM_001039532)	41.0	NM_001039532	654801.0	Mm.333548	NM_001039532	ENSMUSG00000043290	Zfp784	C730049F21Rik|Znf784	zinc finger protein 784	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70246425-2	chr11	70246325	70246525	+	564.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007440, intron 10 of 13)	B1_Mm|SINE|Alu	-6573.0	NM_173742	52898.0	Mm.29852	NM_173742	ENSMUSG00000093989	Rnasek	2310033H11Rik|AA571397|D11Bwg0434e	ribonuclease, RNase K	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-38874131-4	chr6	38874018	38874218	+	855.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010433, intron 1 of 14)	intron (NM_010433, intron 1 of 14)	2072.0	NM_010433	15258.0	Mm.23790	NM_010433	ENSMUSG00000061436	Hipk2	1110014O20Rik|B230339E18Rik|Stank	homeodomain interacting protein kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46307456-2	chr19	46307356	46307556	+	705.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001177369, exon 7 of 23)	exon (NM_001177369, exon 7 of 23)	1526.0	NM_001177370	18034.0	Mm.102365	NM_019408	ENSMUSG00000025225	Nfkb2	NF-kappaB2|lyt|p49|p49/p100|p50B|p52	nuclear factor of kappa light polypeptide gene enhancer in B cells 2, p49/p100	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-65931467-3	chr5	65931374	65931574	+	935.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35650.0	NM_001081104	231252.0	Mm.140015	NM_001081104	ENSMUSG00000029205	Chrna9	2410015I05Rik|Acra9|EG666827|Gm8311	cholinergic receptor, nicotinic, alpha polypeptide 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-146630622-1	chr3	146630522	146630722	+	871.5	f0_balb.idr	3' UTR (NM_009474, exon 8 of 8)	3' UTR (NM_009474, exon 8 of 8)	-11310.0	NR_045949	100286843.0	Mm.475299	NR_045949	ENSMUSG00000085810	Gm16325	-	predicted gene 16325	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-41051708-4	chr9	41051596	41051796	+	862.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176860, intron 1 of 13)	intron (NM_176860, intron 1 of 13)	27810.0	NM_001357412	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	0.539782382081308	0.598575147041209	1.81003799968904	1.74210777556202	0.543663115974442	0.60266058140498	0.584197695867529	1.99249256251012	-0.587720191353308	0.857643815693989	0.998431161219273
Merged-chr2-32967493-4	chr2	32967400	32967600	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4199.0	NR_002898	104367.0	Mm.250030	NR_002898	ENSMUSG00000065124	Snora65	MBII-351|Rnu65	small nucleolar RNA, H/ACA box 65	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-80887000-2	chr12	80886900	80887100	+	587.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	37447.0	NR_033786	67340.0	Mm.386790	NR_033786	ENSMUSG00000101912	1700052I22Rik	-	RIKEN cDNA 1700052I22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-19952448-3	chr13	19952359	19952559	+	629.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-128202.0	NM_181754	353346.0	Mm.239268	NM_181754	ENSMUSG00000053101	Gpr141	PGR13	G protein-coupled receptor 141	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-109864579-2	chr8	109864479	109864679	+	696.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_009677)	TTS (NM_009677)	-4024.0	NM_001122594	244650.0	Mm.23494	NM_001122594	ENSMUSG00000031732	Phlpp2	AI481772|C130044A18Rik|Phlppl	PH domain and leucine rich repeat protein phosphatase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-152396397-3	chr2	152396284	152396484	+	854.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011438, exon 1 of 1)	3' UTR (NM_011438, exon 1 of 1)	1662.0	NM_011438	20667.0	Mm.28424	NM_011438	ENSMUSG00000051817	Sox12	2010205A02Rik	SRY (sex determining region Y)-box 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-143058343-3	chr7	143058184	143058384	+	837.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133655, intron 1 of 7)	intron (NM_133655, intron 1 of 7)	-4598.0	NR_110354	97423.0	Mm.5250	NM_133790	ENSMUSG00000059277	R74862	-	expressed sequence R74862	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-102801697-4	chr4	102801586	102801786	+	961.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144906, intron 1 of 23)	L1MB8|LINE|L1	41551.0	NM_001285859	73094.0	Mm.54201	NM_144906	ENSMUSG00000028524	Sgip1	3110007P09Rik|SGIP1alpha|gag	SH3-domain GRB2-like (endophilin) interacting protein 1	protein-coding	2.4113688944619	2.59597754229732	2.24464162957427	1.64363994987116	2.32779668162642	3.32132400893168	2.83544314356832	2.03834550796565	0.948372127937915	0.252529784534749	0.750119406264342
Merged-chr17-56165260-2	chr17	56165160	56165360	+	681.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025566, intron 1 of 1)	PB1D7|SINE|Alu	2769.0	NM_025566	66443.0	Mm.2312	NM_025566	ENSMUSG00000044469	Tnfaip8l1	2600017J23Rik|TIPE1	tumor necrosis factor, alpha-induced protein 8-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107901581-2	chr9	107901484	107901684	+	575.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_028369, exon 4 of 6)	exon (NM_028369, exon 4 of 6)	-5305.0	NR_109782	19882.0	Mm.3901	NM_009074	ENSMUSG00000032584	Mst1r	CD136|CDw136|Fv-2|Fv2|PTK8|Ron|STK	macrophage stimulating 1 receptor (c-met-related tyrosine kinase)	protein-coding	0.00751167764093574	0.0392770356791112	0.982937777755766	0.0211219115397802	0.00956377857101071	0.0415354094830649	0.0313799479481494	1.34508093814252	0.769102772744695	0.724431417707538	1
Merged-chr19-6056035-1	chr19	6055935	6056135	+	851.0	f1_balb.idr	intron (NM_026246, intron 2 of 3)	B2_Mm1t|SINE|B2	1716.0	NM_026246	18120.0	Mm.181290	NM_026246	ENSMUSG00000007338	Mrpl49	4833419D18Rik|Nof1	mitochondrial ribosomal protein L49	protein-coding	0.44290714905624	0.333378998921971	0.926498899243296	0.32423613220402	0.561089952020929	0.334553808510737	0.748009053159602	0.713432650459307	0.377209452794707	0.834530326499478	1
Merged-chr16-11065541-2	chr16	11065441	11065641	+	762.625	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009223)	promoter-TSS (NM_009223)	-757.0	NM_009223	20621.0	Mm.325800	NM_009223	ENSMUSG00000037972	Snn	2810407J07Rik|AI848521|AW547286	stannin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-91725083-2	chr12	91724983	91725183	+	651.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 3 of 6)	RLTR23|LTR|ERV1	61353.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-83885338-4	chr3	83885222	83885422	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43714.0	NM_011905	24088.0	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-161041431-3	chr2	161041327	161041527	+	803.277771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_126509, intron 4 of 35)	intron (NR_126509, intron 4 of 35)	67659.0	NM_173368	71389.0	Mm.122738	NM_173368	ENSMUSG00000057133	Chd6	5430439G14Rik|6330406J24Rik|CHD-6	chromodomain helicase DNA binding protein 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-31116778-4	chr7	31116658	31116858	+	890.783325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011322, exon 6 of 6)	3' UTR (NM_011322, exon 6 of 6)	-1432.0	NM_001110252	15451.0	Mm.19182	NM_008281	ENSMUSG00000001249	Hpn	Hlb320	hepsin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-137286800-4	chr5	137286715	137286915	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1439.0	NM_009599	11423.0	Mm.255464	NM_009599	ENSMUSG00000023328	Ache	-	acetylcholinesterase	protein-coding	2.99506443692121	2.14226603640691	2.55736826812193	3.22096805516436	2.69796269069272	3.20873149389459	2.27426474782751	3.09204690139031	0.119565804310028	0.868635982508966	0.998431161219273
Merged-chr11-79142202-4	chr11	79142116	79142316	+	885.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013571, intron 1 of 17)	intron (NM_013571, intron 1 of 17)	4257.0	NM_013571	16706.0	Mm.4745	NM_013571	ENSMUSG00000018334	Ksr1	AW492498|B-KSR1|D11Bhm183e|D11Bhm184e|Ksr|RSU2|hb|mKSR1	kinase suppressor of ras 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-92641368-4	chr1	92641281	92641481	+	817.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163425, intron 1 of 2)	intron (NM_001163425, intron 1 of 2)	567.0	NR_028108	66915.0	Mm.30179	NM_001163425	ENSMUSG00000073616	Cops9	1110002M09Rik|Myeov2	COP9 signalosome subunit 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34896041-2	chr17	34895941	34896141	+	621.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_198886, exon 2 of 2)	exon (NM_198886, exon 2 of 2)	1482.0	NM_198886	193736.0	Mm.161119	NM_198886	ENSMUSG00000049823	Zbtb12	BC020447|Bat-9|Bat9|G10|NG35	zinc finger and BTB domain containing 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-42527120-4	chr13	42526998	42527198	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-153701.0	NM_001302635	218194.0	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-6061379-2	chr13	6061279	6061479	+	695.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	199890.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-139062297-4	chr3	139062181	139062381	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356388, intron 1 of 13)	intron (NM_001356388, intron 1 of 13)	12920.0	NM_145544	229877.0	Mm.28893	NM_145544	ENSMUSG00000028149	Rap1gds1	BC011279|GDS1	RAP1, GTP-GDP dissociation stimulator 1	protein-coding	3.64836078642455	3.6973723984972	2.56581226982776	2.32563585715834	3.46109817429542	3.309650280483	2.99034706715702	3.3559219401019	0.134037937809966	0.835149415506501	0.998431161219273
Merged-chr18-42781692-3	chr18	42781591	42781791	+	893.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028392, intron 1 of 8)	intron (NM_028392, intron 1 of 8)	117815.0	NR_073583	72930.0	Mm.26134	NM_027531	ENSMUSG00000024500	Ppp2r2b	2900026H06Rik|6330404L05Rik|E130009M08Rik|PP2A-PR55B|PR55-BETA|SCA12	protein phosphatase 2, regulatory subunit B, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-134552223-4	chr4	134552126	134552326	+	933.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029100)	promoter-TSS (NM_029100)	-60.0	NM_029100	74777.0	Mm.29773	NM_029100	ENSMUSG00000050989	Selenon	1110019I12Rik|AI414492|SelN|Sepn1	selenoprotein N	protein-coding	-0.177068371940088	-0.154770782723947	0.976636995414439	-0.167596548729973	-0.175648291854428	-0.153160494671792	-0.16037602545798	0.46686625703699	-1.27335306453195	0.593221319572436	1
Merged-chr13-82072240-2	chr13	82072140	82072340	+	627.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5b|LINE|L1	288993.0	NM_007684	12626.0	Mm.12481	NM_007684	ENSMUSG00000021537	Cetn3	MmCEN3	centrin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-155944483-4	chr4	155944388	155944588	+	979.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001284312, intron 1 of 7)	intron (NM_001284312, intron 1 of 7)	330.0	NM_001284312	140499.0	Mm.371673	NM_021402	ENSMUSG00000023286	Ube2j2	1200007B18Rik|2400008G19Rik|5730472G04Rik|AL022923|NCUBE-2|Ubc6|Ubc6p	ubiquitin-conjugating enzyme E2J 2	protein-coding	2.87917159795736	0.872406607241509	2.34687344963317	1.47785596302309	1.03247958941322	1.17481132538377	1.35663211833848	0.8265476509839	-2.99226470907024	0.0180064181770993	0.166270655686638
Merged-chr11-22800399-2	chr11	22800299	22800499	+	634.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	59336.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71127661-4	chr17	71127550	71127750	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010867)	TTS (NM_010867)	-55882.0	NM_001357791	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97343800-3	chr11	97343661	97343861	+	910.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081220, exon 7 of 11)	exon (NM_001081220, exon 7 of 11)	8312.0	NM_001081220	217143.0	Mm.32622	NM_175453	ENSMUSG00000070337	Gpr179	5330439C02Rik|Gpr158l1	G protein-coupled receptor 179	protein-coding	1.04530541052546	0.546259084501133	0.734792616305235	0.52795097875122	0.947928087431507	0.548561202502083	1.05206090484289	1.57196148546313	1.71952544531292	0.284925784730369	0.789136557062551
Merged-chr8-84840701-4	chr8	84840570	84840770	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001297607)	promoter-TSS (NM_001297607)	-5.0	NM_009010	19358.0	Mm.255539	NM_009010	ENSMUSG00000003813	Rad23a	2310040P19Rik|AL024030|HR23A|mHR23A	RAD23 homolog A, nucleotide excision repair protein	protein-coding	-0.554459396759707	-0.537088357358106	0.603949874171847	-0.547086493046679	-0.553354678371831	-0.535832126319626	-0.322646613017806	-0.546317799593293	-2.9448648930602	0.259054174086748	1
Merged-chr18-65704214-4	chr18	65704248	65704448	+	958.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177028, intron 1 of 14)	intron (NM_177028, intron 1 of 14)	6080.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-92874239-4	chr16	92874119	92874319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48145.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-104361917-3	chr11	104361815	104362015	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359634, intron 5 of 14)	RLTR19|LTR|ERVK	80376.0	NM_001081045	76719.0	Mm.136418	NM_001081045	ENSMUSG00000018412	Kansl1	1700081L11Rik|9430041J06Rik|mKIAA1267	KAT8 regulatory NSL complex subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-57891212-1	chr14	57891112	57891312	+	544.0	f1_c57bl6.idr	promoter-TSS (NM_001360097)	promoter-TSS (NM_001360097)	-876.0	NM_001360097	75965.0	Mm.29044	NM_029492	ENSMUSG00000021969	Zdhhc20	4930542A17Rik|5033406L14Rik|AI448102|B230110O18Rik|HK11	zinc finger, DHHC domain containing 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-31150828-2	chr8	31150731	31150931	+	1000.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_103719, exon 1 of 8)	non-coding (NR_103719, exon 1 of 8)	515.0	NR_103719	234138.0	Mm.349800	NM_144927	ENSMUSG00000031577	Tti2	-	TELO2 interacting protein 2	protein-coding	2.4482917124104	3.33280478951997	2.97569185221708	1.76517589836274	2.34994731128556	3.27756144810597	2.68099473141959	2.99414015158217	0.205509239156868	0.787115140857008	0.998431161219273
Merged-chr1-171638891-4	chr1	171638776	171638976	+	948.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347184, intron 3 of 5)	intron (NM_001347184, intron 3 of 5)	3024.0	NR_106151	102465784.0		NR_106151	ENSMUSG00000098316	Mir7683	Gm27950|mmu-mir-7683	microRNA 7683	ncRNA	3.75522649632139	1.6586211164854	3.27602342275436	2.90996168698825	3.69650247450275	2.41771543975623	3.3015683414149	2.8177450800436	0.0705157975836759	0.925075635061567	0.998431161219273
Merged-chr4-141541026-4	chr4	141540921	141541121	+	999.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2424.0	NM_019763	56381.0	Mm.299906	NM_019763	ENSMUSG00000040761	Spen	Mint|mKIAA0929	spen family transcription repressor	protein-coding	1.09975508986425	0.907937536341496	2.05378298998356	0.641911434084891	1.11084625231577	0.914934401465191	1.2267707450494	0.643923542398803	-1.21898430078559	0.393771799001532	0.882309644749821
Merged-chr17-45567182-1	chr17	45567082	45567282	+	775.0	f1_c57bl6.idr	TTS (NM_008302)	TTS (NM_008302)	3246.0	NM_001357105	73836.0	Mm.289716	NM_028662	ENSMUSG00000037089	Slc35b2	1110003M08Rik|AA407792|AI842275|PAPST1|Slc35b1	solute carrier family 35, member B2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-86401268-4	chr6	86401171	86401371	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2948.0	NM_001164079	21841.0	Mm.333219	NM_011585	ENSMUSG00000071337	Tia1	2310050N03Rik|AI256674|TIA-1|mTIA-1	cytotoxic granule-associated RNA binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-98543032-3	chr7	98542938	98543138	+	789.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	48816.0	NM_001113379	434215.0	Mm.323057	NM_001113379	ENSMUSG00000090958	Lrrc32	AI426318|D11S833Eh|D7H11S833E|EG434215|Garp	leucine rich repeat containing 32	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-99315125-3	chr12	99315005	99315205	+	923.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183186, intron 3 of 5)	intron (NM_183186, intron 3 of 5)	134969.0	NM_183186	71375.0	Mm.341972	NM_183186	ENSMUSG00000033713	Foxn3	5430426H20Rik|AA589593|AW556347|Ches1|Ches1l|HTLFL1	forkhead box N3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31596660-4	chr14	31596573	31596773	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-19290.0	NM_009937	382864.0	Mm.239821	NM_009937	ENSMUSG00000057606	Colq	A130034K24Rik	collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-86526530-4	chr1	86526442	86526642	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360831)	promoter-TSS (NM_001360831)	-15.0	NR_153834	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-97545379-1	chr11	97545279	97545479	+	541.0	f1_balb.idr	intron (NM_018873, intron 3 of 19)	intron (NM_018873, intron 3 of 19)	29747.0	NM_018873	56013.0	Mm.342665	NM_018873	ENSMUSG00000038453	Srcin1	P140|SNIP|mKIAA1684|p140Cap	SRC kinase signaling inhibitor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-37957033-2	chr18	37956933	37957133	+	943.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_175684)	TTS (NM_175684)	1474.0	NM_153793	225392.0	Mm.233516	NM_153793	ENSMUSG00000044024	Rell2	4631403P03Rik|ependolin	RELT-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-121292677-2	chr3	121292577	121292777	+	601.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_155539, intron 1 of 2)	intron (NR_155539, intron 1 of 2)	937.0	NM_024178	66789.0	Mm.269881	NM_024178	ENSMUSG00000039887	Alg14	5430428G01Rik|AI854024	asparagine-linked glycosylation 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-35140002-1	chr15	35139902	35140102	+	755.5	f0_balb.idr	intron (NM_001357821, intron 1 of 11)	RMER17C-int|LTR|ERVK	15804.0	NM_001357821	56274.0	Mm.262330	NM_019635	ENSMUSG00000022329	Stk3	0610042I06Rik|MST|Mst2|Mst3|Ste20|mess1	serine/threonine kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80676050-4	chr10	80675956	80676156	+	953.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021462, intron 1 of 13)	CpG-1308	237.0	NM_021462	17347.0	Mm.42126	NM_021462	ENSMUSG00000020190	Mknk2	2010016G11Rik|Gprk7|Mnk2	MAP kinase-interacting serine/threonine kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-30395302-4	chr16	30395178	30395378	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-6748.0	NM_001128096	224088.0	Mm.8924	NM_001128094	ENSMUSG00000022533	Atp13a3	AU022875|Gm1745|Gm541|Gm542	ATPase type 13A3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-67246087-4	chr17	67246041	67246241	+	845.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	MER2|DNA|TcMar-Tigger	108318.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	2.05003294527896	2.0543403372109	2.32063835601047	1.64614962522163	1.85410824478834	2.41971362232127	1.50768734447699	1.94294859725725	-0.176055700653137	0.853391326337568	0.998431161219273
Merged-chr11-118145935-4	chr11	118145829	118146029	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16710.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115071958-4	chr11	115071943	115072143	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-10004.0	NM_172050	217306.0	Mm.222667	NM_172050	ENSMUSG00000048498	Cd300e	BC034097|CLM2|Cd300le|TREM5	CD300E molecule	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-111506440-4	chr10	111506322	111506522	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009344, exon 1 of 2)	exon (NM_009344, exon 1 of 2)	136.0	NM_009344	21664.0	Mm.3117	NM_009344	ENSMUSG00000020205	Phlda1	DT1P1B11|TDAG51|Tdag	pleckstrin homology like domain, family A, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-24393074-7	chr16	24393041	24393241	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178665)	promoter-TSS (NM_178665)	-209.0	NM_178665	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-72607190-4	chr11	72607065	72607265	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025985)	promoter-TSS (NM_025985)	-96.0	NM_025985	67128.0	Mm.458052	NM_025985	ENSMUSG00000020794	Ube2g1	2700059C12Rik|AI256795|AU014992|AW552068|D130023C12Rik	ubiquitin-conjugating enzyme E2G 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-30617073-4	chr15	30616984	30617184	+	984.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355502, intron 3 of 21)	MLT1B|LTR|ERVL-MaLR	-422042.0	NR_045186	73784.0	Mm.66947	NR_045186	ENSMUSG00000115474	4930430F21Rik	-	RIKEN cDNA 4930430F21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-21200655-4	chr13	21200552	21200752	+	992.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	20721.0	NM_009054	19720.0	Mm.314056	NM_009054	ENSMUSG00000021326	Trim27	AW538890|Gm19403|Rfp	tripartite motif-containing 27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-26996128-2	chr5	26996028	26996228	+	887.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001198886, intron 1 of 25)	MTC|LTR|ERVL-MaLR	-53071.0	NM_207282	13483.0	Mm.42078	NM_010075	ENSMUSG00000061576	Dpp6	B930011P16Rik|D5Buc3|D5Buc4|D5Buc5|DPP VI|Dpp-6|Gm1377|In(5)6H-p|Peplb|Rw	dipeptidylpeptidase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-114045116-4	chr6	114045010	114045210	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3030.0	NM_009723	11941.0	Mm.321755	NM_009723	ENSMUSG00000030302	Atp2b2	D6Abb2e|Gena300|PMCA2|Tmy|dfw|jog|wms|wri	ATPase, Ca++ transporting, plasma membrane 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-29752811-2	chr17	29752711	29752911	+	769.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35794.0	NM_001163741	68597.0	Mm.390979	NM_026782	ENSMUSG00000024018	Ccdc167	1110021J02Rik	coiled-coil domain containing 167	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166046515-3	chr2	166046453	166046653	+	837.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008679, intron 2 of 22)	intron (NM_008679, intron 2 of 22)	53916.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	-0.348761317293124	-0.332181781591601	0.162651037677275	-0.341761546048314	-0.347716004787272	-0.330970988643486	0.595197879220607	-0.341028596127301	1.27258897699637	0.621367506938642	1
Merged-chr3-95628624-2	chr3	95628536	95628736	+	610.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_019561, exon 3 of 4)	exon (NM_019561, exon 3 of 4)	3656.0	NM_001026212	56205.0	Mm.241365	NM_019561	ENSMUSG00000038619	Ensa	1700020C18Rik|2610007F17Rik|AI451924	endosulfine alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-170277248-3	chr1	170277169	170277369	+	716.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_012009)	promoter-TSS (NM_012009)	-49.0	NM_012009	26904.0	Mm.57009	NM_012009	ENSMUSG00000102418	Sh2d1b1	EAT-2|EAT-2A|Eat2|Eat2a|Sh2d1b	SH2 domain containing 1B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-82065706-2	chr15	82065606	82065806	+	711.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001166475, exon 2 of 2)	exon (NM_001166475, exon 2 of 2)	-4411.0	NM_028897	74369.0	Mm.289351	NM_028897	ENSMUSG00000068117	Mei1	4932408F18Rik|mei1	meiotic double-stranded break formation protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-149462780-2	chr4	149462680	149462880	+	780.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7812.0	NM_022020	63954.0	Mm.46023	NM_022020	ENSMUSG00000028996	Rbp7	1110002J23Rik|CRBP-III	retinol binding protein 7, cellular	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5895086-2	chr19	5894989	5895189	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001362045)	promoter-TSS (NM_001362045)	-961.0	NM_198634	332359.0	Mm.329642	NM_198634	ENSMUSG00000044390	Tigd3	-	tigger transposable element derived 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-34707869-1	chr17	34707769	34707969	+	749.666687	f1_balb.idr	intron (NM_031176, intron 16 of 32)	RMER15-int|LTR|ERVL	36028.0	NM_009780	12268.0	Mm.477109	NM_009780	ENSMUSG00000073418	C4b	C4|Ss	complement component 4B (Chido blood group)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-122566914-2	chr6	122566814	122567014	+	627.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13105.0	NM_009645	11628.0	Mm.391503	NM_009645	ENSMUSG00000040627	Aicda	Aid|Arp2	activation-induced cytidine deaminase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-86439189-2	chr7	86439089	86439289	+	568.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	-26224.0	NM_001011767	257929.0	Mm.377305	NM_001011767	ENSMUSG00000020168	Olfr299	MOR221-2	olfactory receptor 299	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141031930-4	chr4	141031832	141032032	+	922.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145958, intron 19 of 35)	intron (NM_001145958, intron 19 of 35)	21295.0	NM_008546	17150.0	Mm.7386	NM_008546	ENSMUSG00000060572	Mfap2	AI893631|Magp|Magp1	microfibrillar-associated protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-4978432-4	chr6	4978298	4978498	+	968.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181595, intron 2 of 15)	intron (NM_181595, intron 2 of 15)	75078.0	NM_181595	243725.0	Mm.332901	NM_181595	ENSMUSG00000032827	Ppp1r9a	2810430P21Rik|4930518N04Rik|5330407E15|A230094E16Rik|BB181831|NRB|mKIAA1222|neurabin-I	protein phosphatase 1, regulatory (inhibitor) subunit 9A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-45582972-4	chr17	45582880	45583080	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	9413.0	NM_022880	63959.0	Mm.29744	NM_022880	ENSMUSG00000023942	Slc29a1	1200014D21Rik|AA407560|ENT1	solute carrier family 29 (nucleoside transporters), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-25034760-4	chr8	25034661	25034861	+	852.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081187, intron 3 of 8)	B2_Mm2|SINE|B2	4201.0	NM_001081187	330723.0	Mm.334452	NM_001081187	ENSMUSG00000037406	Htra4	B430206E18Rik	HtrA serine peptidase 4	protein-coding	-1.26472950133113	-1.51255384623736	-1.37364594462016	-1.52972510195091	-1.54153971950802	-1.5105109001971	-1.51984705072522	-1.52833894650432	-1.8392127899658	0.598030108707587	1
Merged-chr11-96879215-2	chr11	96879119	96879319	+	626.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28826.0	NR_029562	387170.0		NR_029562	ENSMUSG00000065515	Mir152	Mirn152|mir-152|mmu-mir-152	microRNA 152	ncRNA	1.71173109021692	2.46029561742688	0.79342240021786	0.772516810417018	1.48922575687413	2.4816894475267	0.799254620167171	0.776227602725995	-0.0948908617554347	0.968891097650844	0.998431161219273
Merged-chr10-34248693-2	chr10	34248593	34248793	+	983.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33497.0	NM_009433	22110.0	Mm.20445	NM_009433	ENSMUSG00000047514	Tspyl1	Tspyl	testis-specific protein, Y-encoded-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28720926-3	chr17	28720812	28721012	+	956.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168513, intron 3 of 11)	intron (NM_001168513, intron 3 of 11)	28344.0	NM_001357724	26416.0	Mm.311337	NM_011951	ENSMUSG00000053436	Mapk14	CSBP2|Crk1|Csbp1|Mxi2|PRKM14|PRKM15|p38|p38-alpha|p38MAPK|p38a|p38alpha	mitogen-activated protein kinase 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-134854936-2	chr4	134854836	134855036	+	662.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1591.0	NM_025382	66146.0	Mm.99793	NM_025382	ENSMUSG00000028826	Tmem57	1110007C24Rik|9230118A01Rik|AI317300|AI606104|C61|Maco1	transmembrane protein 57	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106478093-2	chr11	106477993	106478193	+	650.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023913, intron 1 of 21)	intron (NM_023913, intron 1 of 21)	9703.0	NM_023913	78943.0	Mm.340943	NM_023913	ENSMUSG00000020715	Ern1	9030414B18Rik|AI225830|C85377|Ire1a|Ire1alpha|Ire1p	endoplasmic reticulum (ER) to nucleus signalling 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-27544467-1	chr7	27544367	27544567	+	762.0	f1_balb.idr	intron (NM_001317355, intron 2 of 13)	B1_Mus2|SINE|Alu	8751.0	NM_011116	18807.0	Mm.6483	NM_011116	ENSMUSG00000003363	Pld3	Sam-9	phospholipase D family, member 3	protein-coding	0.53307508706508	0.136986028568196	0.284489991499342	0.129576693662742	0.541960690940221	0.137939625385757	0.634574661844189	0.130135115933927	0.818107360962272	0.692474554365381	1
Merged-chr19-45749269-5	chr19	45749124	45749324	+	988.313416	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008723, intron 1 of 5)	CpG-7591	339.0	NM_008723	18150.0	Mm.1406	NM_008723	ENSMUSG00000056209	Npm3	Nub1	nucleoplasmin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-12084150-4	chr4	12084087	12084287	+	947.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110955, intron 2 of 28)	RodERV21-int|LTR|ERV1	3770.0	NM_177861	329795.0	Mm.475125	NM_177861	ENSMUSG00000049488	Tmem67	5330408M12Rik|B230117O07|b2b1163.1Clo|b2b1291.1Clo	transmembrane protein 67	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-95729123-3	chr11	95729024	95729224	+	854.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5538.0	NR_028263	320616.0	Mm.428140	NM_177209	ENSMUSG00000075596	B130006D01Rik	-	RIKEN cDNA B130006D01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-88637791-4	chr8	88637690	88637890	+	983.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1662.0	NM_027840	71607.0	Mm.270607	NM_027840	ENSMUSG00000031662	Snx20	9130017C17Rik	sorting nexin 20	protein-coding	2.82817795969621	3.27355537645517	2.65268622925707	1.7062055110776	2.76474831069362	3.38008358300757	3.71555649629596	1.4372624836288	0.591514978904451	0.483865678942767	0.931207887927275
Merged-chr8-122763536-1	chr8	122763436	122763636	+	786.666687	f1_balb.idr	promoter-TSS (NR_151739)	promoter-TSS (NR_151739)	-775.0	NR_151739	382036.0	Mm.132367	NR_151739		A530010L16Rik	BC032935|Gm1908|Gm45801	RIKEN cDNA A530010L16 gene	ncRNA	0.865886772274726	1.26243752534538	0.934858107977636	1.57729013161007	2.09320476612242	0.972466151577519	2.77805773400529	2.74536451835471	3.18950638871518	0.0101266436236328	0.109788677888265
Merged-chr17-27825107-4	chr17	27825001	27825201	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-4559.0	NM_001271511	224647.0	Mm.196577	NM_001033279	ENSMUSG00000056692	D17Wsu92e	AU020189|C030010A15|C80239	DNA segment, Chr 17, Wayne State University 92, expressed	protein-coding	3.9419934999812	3.97366133965727	3.62705317533378	3.35750496895332	3.70944055894747	4.00127555567779	3.04641590095165	3.88766096599412	-0.058182384956944	0.908766208668324	0.998431161219273
Merged-chr14-63085901-3	chr14	63085802	63086002	+	847.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30829.0	NR_046019	72609.0	Mm.387101	NR_046019		2700070H01Rik	-	RIKEN cDNA 2700070H01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-72389056-1	chr12	72388956	72389156	+	771.0	f0_c57.idr	intron (NM_153457, intron 1 of 8)	intron (NM_153457, intron 1 of 8)	19998.0	NM_001286448	104001.0	Mm.221275	NM_153457	ENSMUSG00000021087	Rtn1	Nsp	reticulon 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-60728644-2	chr13	60728544	60728744	+	964.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 15 of 26)	intron (NM_134062, intron 15 of 26)	57720.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-110920109-4	chr10	110920042	110920242	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007792)	promoter-TSS (NM_007792)	-34.0	NM_007792	13008.0	Mm.2020	NM_007792	ENSMUSG00000020186	Csrp2	AW551867|Crp2|SmLim	cysteine and glycine-rich protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116624295-4	chr11	116624195	116624395	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001167680)	promoter-TSS (NM_001167680)	-43.0	NM_001167680	217344.0	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-119580804-2	chr9	119580710	119580910	+	701.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1794.0	NM_021544	20271.0	Mm.103584	NM_021544	ENSMUSG00000032511	Scn5a	Nav1.5|Nav1.5c|SkM1|SkM2|mH1	sodium channel, voltage-gated, type V, alpha	protein-coding	1.38078799011363	1.82673578103619	1.34496977506864	0.921600545793842	1.89119364602772	2.05808758009912	1.35535933822537	0.92412850191697	0.744128064301459	0.554086796588413	0.959914380895535
Merged-chr11-120352807-4	chr11	120352674	120352874	+	969.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4096.0	NR_038126	66838.0	Mm.375010	NR_038126	ENSMUSG00000043644	0610009L18Rik	-	RIKEN cDNA 0610009L18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127471376-4	chr7	127471274	127471474	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145589)	promoter-TSS (NM_145589)	-240.0	NM_145589	233895.0	Mm.44183	NM_145589	ENSMUSG00000030822	Prr14	BC006909	proline rich 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-59160757-4	chr2	59160653	59160853	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026361)	promoter-TSS (NM_026361)	-70.0	NM_001362394	227933.0	Mm.330234	NM_177650	ENSMUSG00000036641	Ccdc148	5830402J09|Gm38473	coiled-coil domain containing 148	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-106693689-1	chr9	106693589	106693789	+	559.0	f1_balb.idr	exon (NM_030730, exon 22 of 22)	exon (NM_030730, exon 22 of 22)	-7737.0	NM_001286498	21767.0	Mm.22266	NM_011573	ENSMUSG00000040813	Tex264	TEG-264	testis expressed gene 264	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-17546543-2	chr12	17546443	17546643	+	715.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013614, intron 1 of 11)	intron (NM_013614, intron 1 of 11)	1670.0	NM_013614	18263.0	Mm.34102	NM_013614	ENSMUSG00000011179	Odc1	ODC	ornithine decarboxylase, structural 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-51851340-2	chr13	51851240	51851440	+	650.1999509999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	4665.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-58933777-4	chr15	58933669	58933869	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175151)	promoter-TSS (NM_175151)	-39.0	NM_175151	69694.0	Mm.383230	NM_175151	ENSMUSG00000050891	Tatdn1	2310079P03Rik|CDA11	TatD DNase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-186554268-1	chr1	186554168	186554368	+	759.0	f0_balb.idr	intron (NR_131124, intron 1 of 2)	MTE2a|LTR|ERVL-MaLR	4413.0	NR_131124	320449.0	Mm.404477	NR_131124	ENSMUSG00000103690	A730004F24Rik	-	RIKEN cDNA A730004F24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-22859130-4	chr11	22859097	22859297	+	978.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001169114, intron 1 of 1)	CpG	538.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-119265702-6	chr9	119265616	119265816	+	917.861084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359582, intron 8 of 18)	intron (NM_001359582, intron 8 of 18)	-34024.0	NR_033303	109280.0	Mm.261557	NM_175420	ENSMUSG00000092212	Slc22a13b-ps	9330176C04Rik|Slc22a13b	solute carrier family 22 (organic cation transporter), member 13b, pseudogene	pseudo	-0.283464013616984	0.98600957845077	-0.268101825034214	-0.273813820212012	0.193341651641076	-0.259177276191338	-0.266482367232884	-0.272810602634963	-2.04998956993463	0.396580152980316	1
Merged-chr6-129235227-2	chr6	129235127	129235327	+	910.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_040268, intron 2 of 3)	RMER17C|LTR|ERVK	2818.0	NR_040265	76432.0	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	-1.36245527554381	-1.47758440807466	-1.48704571646499	-1.19707836829368	-1.50667469222183	-1.47553410307769	-1.4849038836314	-1.49342636832094	-1.86907304515541	0.591535440840713	1
Merged-chr16-49943865-4	chr16	49943747	49943947	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11983.0	NR_153658	100503490.0	Mm.72499	NR_153658		Gm19723	-	predicted gene, 19723	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-66009203-2	chr5	66009103	66009303	+	676.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4918.0	NR_027961	231253.0	Mm.436542	NM_177679	ENSMUSG00000054598	9130230L23Rik	-	RIKEN cDNA 9130230L23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-4255321-2	chr19	4255221	4255421	+	597.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	8557.0	NR_105951	102465595.0		NR_105951	ENSMUSG00000099290	Mir6985	Gm27719|mmu-mir-6985	microRNA 6985	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-72665238-2	chr12	72665128	72665328	+	756.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_025522)	promoter-TSS (NM_025522)	-400.0	NM_025522	66375.0	Mm.289653	NM_025522	ENSMUSG00000021094	Dhrs7	2310016E22Rik|5730564L20Rik|AW061210|Retdsr4|Retsdr4	dehydrogenase/reductase (SDR family) member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-48823803-4	chr11	48823701	48823901	+	952.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	tRNA-Val-GTY|tRNA|tRNA	-2337.0	NM_053166	94089.0	Mm.390335	NM_053166	ENSMUSG00000040350	Trim7	AI790312	tripartite motif-containing 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-112799979-4	chr13	112799908	112800108	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008247)	promoter-TSS (NM_008247)	-769.0	NM_008903	19012.0	Mm.291029	NM_008247	ENSMUSG00000021759	Plpp1	Hic53|Hpic53|LPP-1|LPP1|PAP-2a|PAP2-alpha|PAP2a|Ppap2a|mPAP	phospholipid phosphatase 1	protein-coding	5.82601151060317	5.30791666473942	4.96104914845445	5.33343560984386	5.49625242194531	5.65801762891063	5.35221766221835	3.81849919999262	-0.184277389496507	0.624086677529415	0.980545735044748
Merged-chr2-13597188-3	chr2	13597085	13597285	+	838.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22874.0	NM_011701	22352.0	Mm.268000	NM_011701	ENSMUSG00000026728	Vim	-	vimentin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-55809377-1	chr1	55809277	55809477	+	593.333313	f0_c57.idr	Intergenic	Intergenic	-121864.0	NR_045837	329159.0	Mm.98697	NR_045837	ENSMUSG00000099950	9130227L01Rik	-	RIKEN cDNA 9130227L01 gene	ncRNA	2.87724303310489	2.37658083747016	3.36304793225396	2.74255369680669	2.53305957549733	1.32679332529374	1.28546968950537	1.51971383707695	-2.34427292631553	0.0135718877216218	0.135545651124322
Merged-chr2-129145159-3	chr2	129145049	129145249	+	824.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15449.0	NM_025395	66170.0	Mm.40621	NM_025395	ENSMUSG00000037938	Chchd5	1110027L01Rik|AW045710	coiled-coil-helix-coiled-coil-helix domain containing 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115157363-2	chr5	115157263	115157463	+	844.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_175403, intron 1 of 4)	intron (NM_175403, intron 1 of 4)	813.0	NM_175403	109154.0	Mm.153963	NM_175403	ENSMUSG00000048578	Mlec	2410014A08Rik|AI850530|ESTM19|X83352|mKIAA0152	malectin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-94147793-2	chr2	94147693	94147893	+	639.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019657, intron 1 of 10)	RSINE1|SINE|B4	10116.0	NM_019657	56348.0	Mm.22505	NM_019657	ENSMUSG00000027195	Hsd17b12	2610510O05Rik|AI172963|KIK-I|Kik1	hydroxysteroid (17-beta) dehydrogenase 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-12464346-4	chr19	12464260	12464460	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010821, exon 2 of 2)	3' UTR (NM_010821, exon 2 of 2)	3581.0	NM_010821	17476.0	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	3.58448073392773	4.01925890498589	3.73183175886133	4.35086387989444	4.30693629354201	4.63451214108054	4.12001206380186	3.79825362894189	0.397315763138627	0.376541808242281	0.869600522734195
Merged-chr6-91735379-2	chr6	91735279	91735479	+	600.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009320, intron 6 of 14)	intron (NM_009320, intron 6 of 14)	51312.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-3259304-4	chr15	3259193	3259393	+	962.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-11474.0	NM_001042613	20363.0	Mm.392203	NM_009155	ENSMUSG00000064373	Selenop	AU018766|D15Ucla1|Se-P|Sepp1|selp	selenoprotein P	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-53256377-4	chr18	53256292	53256492	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029394, intron 1 of 6)	L1MC5|LINE|L1	10730.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-94467163-3	chr13	94467079	94467279	+	920.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009680, intron 15 of 26)	intron (NM_009680, intron 15 of 26)	108219.0	NM_009680	11774.0	Mm.21185	NM_009680	ENSMUSG00000021686	Ap3b1	AP-3|AU015684|C78395|Hps2|beta3A|pe|pearl|rim2	adaptor-related protein complex 3, beta 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-3643617-2	chr8	3643517	3643717	+	675.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011503, exon 19 of 19)	3' UTR (NM_011503, exon 19 of 19)	-12153.0	NM_001204959	57264.0	Mm.1181	NM_022984	ENSMUSG00000012705	Retn	ADSF|Fizz3|Rstn|Xcp4	resistin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140757997-2	chr5	140757897	140758097	+	571.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33870.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-139131089-4	chr4	139130986	139131186	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033745)	promoter-TSS (NR_033745)	27.0	NM_001163006	433771.0	Mm.305990	NM_001163006	ENSMUSG00000050608	Minos1	2310028O11Rik	mitochondrial inner membrane organizing system 1	protein-coding	5.79920596281283	5.74785899565211	6.37029717237472	6.33853336567911	5.90796183695431	5.89166962845373	5.8032371676273	6.39208125290474	-0.0803085415346221	0.749910755392993	0.998431161219273
Merged-chr17-87045748-2	chr17	87045642	87045842	+	734.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20181.0	NM_019936	56724.0	Mm.109329	NM_019936	ENSMUSG00000024146	Cript	1200020A08Rik|AA589469	cysteine-rich PDZ-binding protein	protein-coding	-1.17496621253595	-1.15081052752249	-1.16154650704664	-1.17036536028253	-0.694716923764521	-1.1484839959734	-0.990190146178075	-1.16878678976971	2.59613346485179	0.426474599917637	1
Merged-chr16-87675868-1	chr16	87675768	87675968	+	668.0	f0_balb.idr	Intergenic	Intergenic	-23086.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129818899-4	chr4	129818845	129819045	+	975.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1534.0	NM_008974	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	2.89170920160679	3.16148127815194	3.52868888632181	3.98720324082195	1.88969049146884	3.28189599888799	1.8307247484634	2.36582141745199	-1.70395013254792	0.019855952752756	0.178406181573315
Merged-chr11-46785177-3	chr11	46785059	46785259	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-25640.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	3.30413113214482	2.74675108752145	3.99041939951233	3.03372831459996	2.18529107366146	1.34453744899081	1.59985733098576	1.24481727807093	-3.5039123093856	0.000111198713435857	0.00334097369900687
Merged-chr12-24710331-4	chr12	24710235	24710435	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009104, intron 4 of 9)	intron (NM_009104, intron 4 of 9)	2081.0	NM_009104	20135.0	Mm.99	NM_009104	ENSMUSG00000020649	Rrm2	AA407299|R2	ribonucleotide reductase M2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-144718730-4	chr3	144718626	144718826	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001282037, intron 1 of 10)	intron (NM_001282037, intron 1 of 10)	1609.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-50691200-2	chr10	50691100	50691300	+	978.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198007, intron 14 of 41)	Lx3A|LINE|L1	98531.0	NM_198007	77987.0	Mm.222497	NM_198007	ENSMUSG00000038774	Ascc3	ASC1p200|B630009I04Rik|BC023451|D430001L07Rik|D630041L21|Helic1|RNAH	activating signal cointegrator 1 complex subunit 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-75857266-7	chr15	75857224	75857424	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5015.0	NM_026960	69146.0	Mm.27385	NM_026960	ENSMUSG00000022575	Gsdmd	1810036L03Rik|AW558049|DF5L|Dfna5l|Gsdmdc1|M2-4	gasdermin D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-54711832-2	chr11	54711732	54711932	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	75871.0	NM_178626	72729.0	Mm.29476	NM_178626	ENSMUSG00000052298	Cdc42se2	2810404F18Rik|AA408783|AA536669|SPEC2	CDC42 small effector 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-91715220-4	chr6	91715115	91715315	+	943.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009320, intron 2 of 14)	intron (NM_009320, intron 2 of 14)	31148.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-54595167-2	chr13	54595067	54595267	+	609.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028870, intron 4 of 4)	intron (NM_028870, intron 4 of 4)	4936.0	NM_025933	67044.0	Mm.29353	NM_025933	ENSMUSG00000025868	Higd2a	2010110M21Rik|AA690237	HIG1 domain family, member 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-50038980-4	chr11	50038899	50039099	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290750, intron 1 of 7)	intron (NM_001290750, intron 1 of 7)	13668.0	NM_001290750	59044.0	Mm.359004	NM_021540	ENSMUSG00000020376	Rnf130	2510042A13Rik|G1RZFP|G1rp|GOLIATH|GP	ring finger protein 130	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-120977993-4	chr10	120977896	120978096	+	960.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081193, exon 1 of 13)	exon (NM_001081193, exon 1 of 13)	1334.0	NM_001081193	380664.0	Mm.339371	NM_001081193	ENSMUSG00000048661	Lemd3	AI316861|Man1	LEM domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-45547335-3	chr9	45547220	45547420	+	885.944458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081270, intron 3 of 32)	intron (NM_001081270, intron 3 of 32)	-116088.0	NR_040732	74602.0	Mm.394117	NR_040732	ENSMUSG00000097074	4833428L15Rik	-	RIKEN cDNA 4833428L15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-98328232-2	chr5	98328132	98328332	+	563.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1072.0	NM_001024614	75784.0	Mm.443240	NM_001024614	ENSMUSG00000057816	1700007G11Rik	4930428O21Rik	RIKEN cDNA 1700007G11 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-79692109-2	chr15	79692009	79692209	+	563.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013818, intron 1 of 11)	MIR|SINE|MIR	1213.0	NM_013818	14904.0	Mm.19080	NM_013818	ENSMUSG00000042535	Gtpbp1	AL022987|AW045683|C85212|GP-1|Gtpbp	GTP binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-26537909-4	chr5	26537823	26538023	+	901.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44609.0	NR_029445	75942.0	Mm.50087	NR_029445	ENSMUSG00000029044	4930584F24Rik	1700001J09Rik|4930522C06Rik	RIKEN cDNA 4930584F24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-52775656-2	chr6	52775556	52775756	+	614.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173406, intron 4 of 4)	intron (NM_173406, intron 4 of 4)	61491.0	NM_001355596	52440.0	Mm.389757	NM_025816	ENSMUSG00000004535	Tax1bp1	1200003J11Rik|1700069J21Rik|AA930106|D6Ertd404e|D6Ertd772e|T6bp|TXBP151	Tax1 (human T cell leukemia virus type I) binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-120037578-2	chr6	120037478	120037678	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001199083, exon 1 of 28)	exon (NM_001199083, exon 1 of 28)	1077.0	NM_001185020	232341.0	Mm.333349	NM_198703	ENSMUSG00000045962	Wnk1	6430573H23Rik|EG406236|Hsn2|Prkwnk1|mKIAA0344	WNK lysine deficient protein kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-119266192-1	chr9	119266092	119266292	+	671.0	f0_balb.idr	intron (NM_001359582, intron 8 of 18)	intron (NM_001359582, intron 8 of 18)	-34500.0	NR_033303	109280.0	Mm.261557	NM_175420	ENSMUSG00000092212	Slc22a13b-ps	9330176C04Rik|Slc22a13b	solute carrier family 22 (organic cation transporter), member 13b, pseudogene	pseudo	1.0207172196596	0.875341188486865	0.852174590037395	1.71388619421909	1.50514238862178	0.880440217200341	2.20302334124725	2.47532245798152	2.23308805497919	0.0896052810135064	0.462202992949291
Merged-chr6-125433892-4	chr6	125433785	125433985	+	821.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53381.0	NM_198604	213522.0	Mm.333396	NM_198604	ENSMUSG00000038167	Plekhg6	BC026778|Gm155	pleckstrin homology domain containing, family G (with RhoGef domain) member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-43093895-3	chr17	43093809	43094009	+	948.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	64382.0	NR_045155	545207.0	Mm.329050	NR_045153		E130008D07Rik	-	RIKEN cDNA E130008D07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-8584920-2	chr13	8584820	8585020	+	775.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_110345, intron 3 of 10)	intron (NR_110345, intron 3 of 10)	286124.0	NM_001039389	207615.0	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-25523849-2	chr14	25523749	25523949	+	562.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 2 of 23)	intron (NM_183208, intron 2 of 23)	-10590.0	NR_037236	100526533.0		NR_037236	ENSMUSG00000093081	Mir3075	mir-3075|mmu-mir-3075	microRNA 3075	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100947655-2	chr11	100947555	100947755	+	573.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-8115.0	NM_011486	20848.0	Mm.249934	NM_011486	ENSMUSG00000004040	Stat3	1110034C02Rik|AW109958|Aprf	signal transducer and activator of transcription 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-4016445-4	chr15	4016370	4016570	+	950.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_045740)	TTS (NR_045740)	-9958.0	NM_024188	67041.0	Mm.13445	NM_024188	ENSMUSG00000022186	Oxct1	2610008O03Rik|Oxct|Oxct2a|Scot-s	3-oxoacid CoA transferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119955097-5	chr11	119954965	119955165	+	756.700012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037754, intron 1 of 13)	intron (NM_001037754, intron 1 of 13)	11973.0	NM_130862	108100.0	Mm.197534	NM_130862	ENSMUSG00000025372	Baiap2	IRSp53|R75030	brain-specific angiogenesis inhibitor 1-associated protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150595235-3	chr4	150595129	150595329	+	699.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 12 of 22)	intron (NM_001085492, intron 12 of 22)	56945.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-114887566-4	chr11	114887450	114887650	+	720.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4B|LINE|L1	-2491.0	NM_001347654	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-25747752-4	chr14	25747701	25747901	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001101433, intron 2 of 3)	intron (NM_001101433, intron 2 of 3)	21055.0	NM_001101433	71918.0	Mm.41904	NM_001101433	ENSMUSG00000055538	Zcchc24	2310047A01Rik	zinc finger, CCHC domain containing 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-117124546-2	chr4	117124446	117124646	+	1000.0	f0_balb.idr|f1_c57bl6.idr	non-coding (NR_024078, exon 2 of 7)	non-coding (NR_024078, exon 2 of 7)	1179.0	NR_024078	78611.0	Mm.446227	NM_001033187		Btbd19	9530048O09Rik|BB115071	BTB (POZ) domain containing 19	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-27352214-2	chr14	27352114	27352314	+	913.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289687, intron 1 of 9)	intron (NM_001289687, intron 1 of 9)	-9175.0	NM_001289688	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-29839633-4	chr5	29839537	29839737	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-103701.0	NR_028426	332993.0	Mm.473746	NR_028426		Gm5129	EG332993	predicted gene 5129	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-69257760-4	chr10	69257651	69257851	+	997.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252637, intron 4 of 10)	intron (NM_001252637, intron 4 of 10)	44557.0	NM_001252638	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-120262928-4	chr14	120262843	120263043	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-12726.0	NM_207515	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88534326-2	chr3	88534226	88534426	+	986.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001029890, intron 1 of 1)	intron (NM_001029890, intron 1 of 1)	1931.0	NM_001029890	72640.0	Mm.275154	NM_001029890	ENSMUSG00000074480	Mex3a	2700083E18Rik|Gm411|Rkhd4	mex3 RNA binding family member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-89423336-3	chr7	89423230	89423430	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2976.0	NR_102276	101521.0	Mm.26902	NR_102276	ENSMUSG00000109311	AI314278	-	expressed sequence AI314278	ncRNA	1.81093137251455	2.20153088251171	2.41935765817201	2.46965711562901	2.55876990608695	3.04640392679263	2.94742577543997	2.48222446953476	1.13804071359007	0.141451629350574	0.587115153883766
Merged-chr6-37426459-2	chr6	37426359	37426559	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178661, intron 1 of 11)	ORR1A4|LTR|ERVL-MaLR	15689.0	NM_178661	208647.0	Mm.169929	NM_178661	ENSMUSG00000038648	Creb3l2	BBF2H7|C530025K05Rik|SCIRR69	cAMP responsive element binding protein 3-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-77752817-2	chr18	77752717	77752917	+	742.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MMERVK9E_I-int|LTR|ERVK	14982.0	NM_146089	225745.0	Mm.39293	NM_146089	ENSMUSG00000041840	Haus1	BC024400|Ccdc5|HEI-C	HAUS augmin-like complex, subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-103531975-3	chr14	103531856	103532056	+	726.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022886, intron 3 of 30)	intron (NM_022886, intron 3 of 30)	18615.0	NM_022886	64929.0	Mm.244003	NM_022886	ENSMUSG00000022123	Scel	9230114I02Rik	sciellin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-127970436-1	chr6	127970336	127970536	+	606.0	f1_c57bl6.idr	intron (NM_001356301, intron 2 of 7)	intron (NM_001356301, intron 2 of 7)	82814.0	NM_026743	68498.0	Mm.174368	NM_026743	ENSMUSG00000030351	Tspan11	1110014F12Rik|AU067806	tetraspanin 11	protein-coding	2.07946395121455	2.12038634643379	1.42736915931488	1.17474586076309	2.00445300351095	1.85547852284959	2.456372698454	1.87867479053512	0.822400983049743	0.427536556850483	0.902392427013133
Merged-chr7-79660127-4	chr7	79660030	79660230	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029835)	promoter-TSS (NM_029835)	-66.0	NM_029835	77011.0	Mm.28132	NM_029835	ENSMUSG00000046591	Ticrr	5730590G19Rik|BC028450|Lrrk1	TOPBP1-interacting checkpoint and replication regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-55364079-2	chr13	55363978	55364178	+	645.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-1295.0	NM_025828	66890.0	Mm.38868	NM_025828	ENSMUSG00000021484	Lman2	1110003H06Rik|1300009F09Rik|AA408240|AL023023|AU040819|GP36B|VIP36	lectin, mannose-binding 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-110166383-4	chr7	110166297	110166497	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44338.0	NM_009516	22390.0	Mm.287173	NM_009516	ENSMUSG00000031016	Wee1	Wee1A	WEE 1 homolog 1 (S. pombe)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-16011930-3	chr13	16011826	16012026	+	846.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008380)	promoter-TSS (NM_008380)	75.0	NM_008380	16323.0	Mm.8042	NM_008380	ENSMUSG00000041324	Inhba	-	inhibin beta-A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-22112314-2	chr9	22112214	22112414	+	553.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_170777)	TTS (NM_170777)	1699.0	NR_106052	102466221.0		NR_106052	ENSMUSG00000098646	Mir7084	Gm27978|mmu-mir-7084	microRNA 7084	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-89237322-4	chr9	89237232	89237432	+	904.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359993, intron 2 of 2)	intron (NM_001359993, intron 2 of 2)	25948.0	NM_001359993	107885.0	Mm.486274	NM_026829	ENSMUSG00000066442	Mthfs	1110034I12Rik|2310020H23Rik|AI119695	5, 10-methenyltetrahydrofolate synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-123394273-4	chr7	123394178	123394378	+	976.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025304, intron 1 of 10)	intron (NM_025304, intron 1 of 10)	-13539.0	NM_001355050	30949.0	Mm.260527	NM_025304	ENSMUSG00000030763	Lcmt1	AL033290|LCMT-1|Lcmt	leucine carboxyl methyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-90267882-2	chr9	90267782	90267982	+	572.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 1 of 12)	intron (NM_194334, intron 1 of 12)	2887.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101836777-4	chr7	101836685	101836885	+	875.611084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001122739, exon 2 of 29)	5' UTR (NM_001122739, exon 2 of 29)	1039.0	NM_001122739	16332.0	Mm.476000	NM_010567	ENSMUSG00000032737	Inppl1	51C|SHIP2	inositol polyphosphate phosphatase-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-94587263-3	chr3	94587161	94587361	+	715.083313	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-4545.0	NM_029721	76742.0	Mm.28160	NM_029721	ENSMUSG00000028136	Snx27	5730552M22Rik|ESTM45|ESTM47|R75405	sorting nexin family member 27	protein-coding	-0.333574173997655	-0.321725780228177	-0.325623049520159	-0.328619576982876	0.0315926548994589	-0.320845195327207	0.228833228998403	-0.0345231839823615	3.59127742047833	0.139581320590271	1
Merged-chr15-80134067-4	chr15	80133970	80134170	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025609, intron 1 of 10)	intron (NM_025609, intron 1 of 10)	916.0	NM_025609	66513.0	Mm.288245	NM_025609	ENSMUSG00000022414	Tab1	2310012M03Rik|Map3k7ip1|b2b449Clo	TGF-beta activated kinase 1/MAP3K7 binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-170308124-4	chr2	170308014	170308214	+	781.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48247.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-25074509-3	chr2	25074417	25074617	+	887.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-5806.0	NM_028093	72090.0	Mm.33403	NM_028093	ENSMUSG00000036813	Entpd8	-	ectonucleoside triphosphate diphosphohydrolase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-131416803-2	chr2	131416703	131416903	+	726.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63911.0	NM_178607	51902.0	Mm.477523	NM_178607	ENSMUSG00000048911	Rnf24	2810473M14Rik|4930505A13Rik|AI317164|C86507|D2Ertd504e	ring finger protein 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-45899075-2	chr9	45898975	45899175	+	857.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361114, intron 3 of 13)	B1_Mus2|SINE|Alu	7107.0	NM_001361114	235315.0	Mm.220945	NM_178709	ENSMUSG00000042790	Rnf214	D130054N24Rik	ring finger protein 214	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-39783591-2	chr15	39783491	39783691	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164466, intron 9 of 9)	intron (NM_001164466, intron 9 of 9)	-13454.0	NR_045788	100503072.0	Mm.446661	NR_045788	ENSMUSG00000087695	Gm16291	-	predicted gene 16291	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-87416795-4	chr12	87416648	87416848	+	941.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21009.0	NR_037228	100526546.0		NR_037228	ENSMUSG00000105428	Mir3068	mir-3068|mmu-mir-3068	microRNA 3068	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-25725144-2	chr7	25725044	25725244	+	785.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144922, intron 12 of 14)	intron (NM_144922, intron 12 of 14)	-6091.0	NM_028771	52132.0	Mm.278798	NM_028771	ENSMUSG00000002608	Ccdc97	1200014H14Rik|2810446P04Rik|AA545218|D7Ertd462e	coiled-coil domain containing 97	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-148443621-1	chr2	148443521	148443721	+	1000.0	f0_balb.idr	promoter-TSS (NM_010740)	promoter-TSS (NM_010740)	-86.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-72410161-3	chr2	72410080	72410280	+	904.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_023057, exon 12 of 20)	exon (NM_023057, exon 12 of 20)	-66039.0	NM_025866	66953.0	Mm.270676	NM_025866	ENSMUSG00000055612	Cdca7	2310021G01Rik|AU044109|JPO1	cell division cycle associated 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-80943977-4	chr8	80943874	80944074	+	980.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA4A|LINE|L1	-63455.0	NM_001301298	14388.0	Mm.277409	NM_021356	ENSMUSG00000031714	Gab1	AA408973|AW107238	growth factor receptor bound protein 2-associated protein 1	protein-coding	2.05773337198807	2.94742573724955	2.07995707855124	2.32100948799263	1.5345808974318	3.72489844681855	2.26587466525782	2.68047699367226	0.774749802587461	0.370515992732908	0.863727598865104
Merged-chr7-120918715-4	chr7	120918635	120918835	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164096, intron 1 of 19)	intron (NM_001164096, intron 1 of 19)	991.0	NM_001164096	26939.0	Mm.193632	NM_025298	ENSMUSG00000030880	Polr3e	RPC5|Sin	polymerase (RNA) III (DNA directed) polypeptide E	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117078200-2	chr11	117078100	117078300	+	800.666626	f1_balb.idr|f1_c57bl6.idr	TTS (NR_105853)	TTS (NR_105853)	852.0	NR_105853	102465258.0		NR_105853	ENSMUSG00000104740	Mir6516	mmu-mir-6516	microRNA 6516	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70724461-1	chr8	70724361	70724561	+	564.0	f1_balb.idr	intron (NM_201607, intron 1 of 16)	intron (NM_201607, intron 1 of 16)	397.0	NM_201607	110385.0	Mm.255180	NM_201607	ENSMUSG00000031842	Pde4c	Dpde1|E130301F19Rik|dunce	phosphodiesterase 4C, cAMP specific	protein-coding	0.531861483809366	-0.0522548018651264	-0.0584899546931758	-0.0633266271018305	-0.0702020787520718	-0.0508544116854061	0.857129320330881	0.118845387935221	1.05704401549389	0.637315022049705	1
Merged-chr3-152193841-4	chr3	152193761	152193961	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025926)	promoter-TSS (NM_025926)	-16.0	NM_025926	67035.0	Mm.46746	NM_025926	ENSMUSG00000028035	Dnajb4	1700029A20Rik|2010306G19Rik|5730460G06Rik	DnaJ heat shock protein family (Hsp40) member B4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-38980934-2	chr6	38980834	38981034	+	781.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 3 of 12)	intron (NM_011539, intron 3 of 12)	61948.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-17721020-1	chr12	17720920	17721120	+	609.0	f1_balb.idr	intron (NM_016677, intron 1 of 3)	intron (NM_016677, intron 1 of 3)	30211.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	-0.997540169838772	-0.978590902270682	-0.991157157510519	-0.993556727375279	-0.996947071237203	-0.330909171284168	-0.797902940985175	-0.993138032165001	3.02916026761537	0.318278610605222	1
Merged-chr3-38036319-2	chr3	38036219	38036419	+	600.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	137506.0	NR_040559	626410.0	Mm.389417	NR_040559	ENSMUSG00000106461	Gm20755	-	predicted gene, 20755	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-86396753-3	chr6	86396653	86396853	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025823, intron 1 of 5)	intron (NM_025823, intron 1 of 5)	397.0	NM_001355687	66881.0	Mm.30849	NM_025823	ENSMUSG00000029998	Pcyox1	1200015P13Rik|AI115532|AI448340|PCL1|Pcly	prenylcysteine oxidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-93494186-3	chr3	93494081	93494281	+	743.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25427.0	NM_027762	71325.0	Mm.68064	NM_027762	ENSMUSG00000027908	Tchhl1	5430400H23Rik|AA589420|S100a17|Thhl1	trichohyalin-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-40756063-1	chr9	40755963	40756163	+	645.0	f1_c57bl6.idr	intron (NM_133733, intron 1 of 6)	B2_Mm2|SINE|B2	-45210.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	1.42703214071982	3.37967542511763	1.27186655343187	2.91217968830511	1.98306860653206	3.05114131906366	2.16872449408524	1.9318415588599	-0.386697312816873	0.692909370550401	0.99740158133691
Merged-chr1-43535877-4	chr1	43535791	43535991	+	968.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010879, intron 3 of 4)	L3|LINE|CR1	90140.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-121104239-4	chr8	121104135	121104335	+	904.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172761, intron 4 of 7)	intron (NM_172761, intron 4 of 7)	4144.0	NM_172761	234814.0	Mm.31690	NM_172761	ENSMUSG00000031816	Mthfsd	AW049977|BC052066|C920004D05	methenyltetrahydrofolate synthetase domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-14159476-4	chr16	14159386	14159586	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_030252)	promoter-TSS (NR_030252)	-140.0	NR_030252	723916.0		NR_030252	ENSMUSG00000070074	Mir484	Mirn484|mir-484|mmu-mir-484	microRNA 484	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-140678814-4	chr6	140678696	140678896	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009637)	TTS (NM_009637)	51911.0	NM_001309436	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-68951994-4	chr8	68951894	68952094	+	912.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	71439.0	NM_008509	16956.0	Mm.1514	NM_008509	ENSMUSG00000015568	Lpl	-	lipoprotein lipase	protein-coding	4.44618083676784	2.85075499826767	3.81089883493751	4.74021258183526	2.88942439151611	2.70875187998009	2.21062567065261	3.15873461347751	-2.03542331408491	0.00102700465941227	0.0199259555854312
Merged-chr1-157549880-4	chr1	157549770	157549970	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159986, intron 12 of 25)	intron (NM_001159986, intron 12 of 25)	23700.0	NM_001159986	89867.0	Mm.87114	NM_033354	ENSMUSG00000026589	Sec16b	Lztr2|Rgpr|Rgpr-p117	SEC16 homolog B (S. cerevisiae)	protein-coding	4.46727789789436	4.01628800674662	4.80131027655312	4.6430318933091	4.38125647088515	4.33239647298209	3.83001461135139	4.49484411812988	-0.297379681618461	0.457960919269677	0.919570891419578
Merged-chr5-96996731-3	chr5	96996620	96996820	+	851.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080708)	promoter-TSS (NM_080708)	-969.0	NM_080708	140780.0	Mm.281490	NM_080708	ENSMUSG00000034663	Bmp2k	4933417M22Rik|AA673486|AV128808|BIKE	BMP2 inducible kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150008581-4	chr4	150008447	150008647	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173371, intron 1 of 4)	intron (NM_173371, intron 1 of 4)	476.0	NM_173371	100198.0	Mm.22183	NM_173371	ENSMUSG00000028980	H6pd	AI785303|G6pd1|Gpd-1|Gpd1	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-3147447-2	chr11	3147351	3147551	+	1000.0	f0_balb.idr|f1_balb.idr	intron (NM_030207, intron 14 of 32)	RMER4B|LTR|ERVK	23430.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-84429751-2	chr11	84429651	84429851	+	738.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_019816, intron 12 of 12)	intron (NM_019816, intron 12 of 12)	83750.0	NM_019816	56321.0	Mm.257482	NM_019816	ENSMUSG00000018697	Aatf	4933415H02Rik|5830465M17Rik|Che-1|Trb	apoptosis antagonizing transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-45241182-3	chr2	45241159	45241359	+	606.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-123817.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-80560962-4	chr17	80560865	80561065	+	971.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360144, intron 1 of 9)	intron (NM_001360144, intron 1 of 9)	2869.0	NM_001033443	381113.0	Mm.329216	NM_001033443	ENSMUSG00000033966	Cdkl4	AU067824|Gm942	cyclin-dependent kinase-like 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-43099678-2	chr15	43099578	43099778	+	637.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357956, intron 2 of 5)	intron (NM_001357956, intron 2 of 5)	71140.0	NM_001357957	239405.0	Mm.193274	NM_172815	ENSMUSG00000051920	Rspo2	2610028F08Rik|AA673245|D430027K22|ftls	R-spondin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-14798784-2	chr9	14798684	14798884	+	633.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_018736, intron 6 of 19)	intron (NM_018736, intron 6 of 19)	14130.0	NM_018736	17535.0	Mm.149071	NM_018736	ENSMUSG00000031928	Mre11a	Mre11|Mre11b	MRE11A homolog A, double strand break repair nuclease	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117221080-4	chr10	117220981	117221181	+	791.237488	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026570, intron 2 of 6)	intron (NM_026570, intron 2 of 6)	3426.0	NM_026570	64050.0	Mm.233529	NM_026570	ENSMUSG00000020171	Yeats4	4930573H17Rik|B230215M10Rik|GAS41|NuBI-1	YEATS domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-143947357-2	chr2	143947257	143947457	+	852.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_024281)	TTS (NM_024281)	32026.0	NM_019771	56431.0	Mm.28919	NM_019771	ENSMUSG00000015932	Dstn	2610043P17Rik|ADF|AU042046|Dsn|corn1|sid23p	destrin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140749229-3	chr5	140749123	140749323	+	961.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_173405, exon 7 of 8)	exon (NM_173405, exon 7 of 8)	25096.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-116004199-3	chr6	116004095	116004295	+	887.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9190.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59076476-4	chr15	59076369	59076569	+	809.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144800, intron 1 of 14)	intron (NM_144800, intron 1 of 14)	5557.0	NM_001146180	211401.0	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-11053996-4	chr16	11053905	11054105	+	892.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12293.0	NM_009223	20621.0	Mm.325800	NM_009223	ENSMUSG00000037972	Snn	2810407J07Rik|AI848521|AW547286	stannin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-91053003-4	chr1	91052914	91053114	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310732)	promoter-TSS (NM_001310732)	-430.0	NM_001111311	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81041675-3	chr10	81041594	81041794	+	715.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4363.0	NM_134135	106947.0	Mm.5353	NM_134135	ENSMUSG00000046822	Slc39a3	AI845814|ZIP-3|Zip3	solute carrier family 39 (zinc transporter), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-27924900-2	chr15	27924800	27925000	+	641.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081302, intron 1 of 56)	intron (NM_001081302, intron 1 of 56)	100948.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-72362091-7	chr12	72361989	72362189	+	993.238098	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153457, intron 1 of 8)	intron (NM_153457, intron 1 of 8)	46965.0	NM_001286448	104001.0	Mm.221275	NM_153457	ENSMUSG00000021087	Rtn1	Nsp	reticulon 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-53352206-2	chr11	53352106	53352306	+	873.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_033565, intron 1 of 20)	intron (NM_033565, intron 1 of 20)	1439.0	NM_033565	93736.0	Mm.395281	NM_033565	ENSMUSG00000049470	Aff4	AF5Q31|Alf4|Laf4l|MCEF	AF4/FMR2 family, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-119268812-2	chr11	119268712	119268912	+	904.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008064, intron 1 of 19)	intron (NM_008064, intron 1 of 19)	849.0	NM_008064	14387.0	Mm.4793	NM_008064	ENSMUSG00000025579	Gaa	E430018M07Rik	glucosidase, alpha, acid	protein-coding	1.15858155233435	1.1094016235453	0.582673363523413	0.750270224312531	1.33349501827337	0.594086729615515	0.584733892755024	1.14652735192495	0.201012888614915	0.900546092628863	1
Merged-chr17-80277768-2	chr17	80277668	80277868	+	788.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198942, intron 2 of 22)	intron (NM_198942, intron 2 of 22)	-12444.0	NM_194269	378462.0	Mm.45208	NM_194269	ENSMUSG00000045257	Morn2	Mopt	MORN repeat containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-21174240-4	chr19	21174166	21174366	+	783.604187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	69556.0	NR_126458	75354.0	Mm.243873	NR_126458		4930554I06Rik	-	RIKEN cDNA 4930554I06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-84990089-4	chr16	84990002	84990202	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198825, intron 12 of 15)	intron (NM_001198825, intron 12 of 15)	17891.0	NR_045889	100038614.0	Mm.441351	NR_045889	ENSMUSG00000115518	Gm10791	-	predicted gene 10791	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-49176232-2	chr6	49176131	49176331	+	693.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023670, intron 2 of 14)	intron (NM_023670, intron 2 of 14)	38723.0	NM_023670	140488.0	Mm.281018	NM_023670	ENSMUSG00000029814	Igf2bp3	2610101N11Rik|AA522010|AL022933|AU045931|IMP-3|IMP3|Koc13|Neilsen|mimp3	insulin-like growth factor 2 mRNA binding protein 3	protein-coding	0.154978546784317	-0.11784465607346	-0.12385576416636	0.875295311667329	-0.135147815141074	-0.116494642090322	-0.122526827264977	0.207020275076345	-2.31480926432691	0.312014290602228	1
Merged-chr1-106561596-4	chr1	106561486	106561686	+	911.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009741, intron 1 of 1)	intron (NM_009741, intron 1 of 1)	-14955.0	NR_106164	102466254.0		NR_106164	ENSMUSG00000098344	Mir3473f	Gm27846|mmu-mir-3473f	microRNA 3473f	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-111090298-4	chr8	111090227	111090427	+	857.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4418.0	NM_198308	319518.0	Mm.28350	NM_198308	ENSMUSG00000033624	Pdpr	4930402E16Rik|AU018056|mKIAA1990	pyruvate dehydrogenase phosphatase regulatory subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-107036105-4	chr3	107036024	107036224	+	891.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008418)	promoter-TSS (NM_008418)	-38.0	NM_008418	16491.0	Mm.30640	NM_008418	ENSMUSG00000047959	Kcna3	Kca1-3|Kv1.3|Mk-3	potassium voltage-gated channel, shaker-related subfamily, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-72962164-3	chr17	72962058	72962258	+	839.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43853.0	NM_029999	77889.0	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-35140585-2	chr7	35140485	35140685	+	574.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21292.0	NM_007678	12606.0	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-78913836-4	chr15	78913720	78913920	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020271)	promoter-TSS (NM_020271)	-99.0	NM_020271	57028.0	Mm.263169	NM_020271	ENSMUSG00000116165	Pdxp	1600027H05Rik|AB041662|PLPP	pyridoxal (pyridoxine, vitamin B6) phosphatase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45703836-2	chr7	45703736	45703936	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_009800, exon 8 of 9)	exon (NM_009800, exon 8 of 9)	-1411.0	NM_016974	13170.0	Mm.24222	NM_016974	ENSMUSG00000059824	Dbp	-	D site albumin promoter binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-85250563-1	chr1	85250463	85250663	+	913.0	f1_balb.idr	intron (NM_175219, intron 6 of 7)	intron (NM_175219, intron 6 of 7)	20003.0	NM_175219	620078.0	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik	RIKEN cDNA C130026I21 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-50735598-4	chr17	50735505	50735705	+	888.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001285991, exon 23 of 23)	3' UTR (NM_001285991, exon 23 of 23)	36924.0	NM_001297747	12228.0	Mm.392910	NM_009770	ENSMUSG00000022863	Btg3	ANA|tob5	B cell translocation gene 3	protein-coding	1.73768994751813	1.95581960577726	2.08951942461081	1.71923440670462	1.23425993271475	1.10755193982987	1.78321129959067	1.59934234926423	-1.38015012875707	0.211148324280117	0.700323931057359
Merged-chr8-126832754-4	chr8	126832639	126832839	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16281.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-128807080-1	chr6	128806980	128807180	+	589.0	f1_balb.idr	Intergenic	RLTR13D3|LTR|ERVK	-18439.0	NM_008527	17059.0	Mm.480764	NM_008527	ENSMUSG00000030325	Klrb1c	AI462337|CD161|Klrb1b|Ly-59|Ly55c|Ly59|NK-RP1|NK1.1|NKR-P1.9|NKRP1|NKRP140|Nk-1|Nk-1.2|Nk1|Nk1.2|Nkrp1b|Nkrp1c|ly-55c	killer cell lectin-like receptor subfamily B member 1C	protein-coding	-0.751044034821655	-0.740930839898789	-0.284362753825833	-0.746804228007503	-0.750413706122334	-0.233388206693112	-0.743516281082833	-0.746357722511573	0.196460799819441	0.947227125273439	1
Merged-chr4-137358408-3	chr4	137358325	137358525	+	858.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001243769)	promoter-TSS (NM_001243769)	-666.0	NM_001243769	12540.0	Mm.1022	NM_009861	ENSMUSG00000006699	Cdc42	AI747189|AU018915	cell division cycle 42	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67099976-2	chr10	67099856	67100056	+	656.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-2968.0	NM_178606	28193.0	Mm.41272	NM_178606	ENSMUSG00000019873	Reep3	D10Ucla1	receptor accessory protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-69522288-3	chr5	69522189	69522389	+	888.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023784, intron 3 of 5)	intron (NM_023784, intron 3 of 5)	20358.0	NM_023784	75581.0	Mm.154776	NM_023784	ENSMUSG00000029158	Yipf7	2310016N21Rik|Yip1b	Yip1 domain family, member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-113930906-4	chr9	113930796	113930996	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001083319)	promoter-TSS (NM_001083319)	-38.0	NM_001083319	22221.0	Mm.28052	NM_013699	ENSMUSG00000009741	Ubp1	Cp2b|LBP-1a|LBP-1b|NF2d9	upstream binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-77725732-3	chr9	77725631	77725831	+	935.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-28804.0	NR_151778	14629.0	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	0.150225583341602	1.08884392726403	0.167694077012458	0.161179922566985	0.322933506417633	0.17791800441752	1.03727573205114	0.355307984009777	0.247239566682458	0.898744637789555	1
Merged-chr11-106677898-5	chr11	106677795	106677995	+	808.4400019999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305158, intron 12 of 14)	intron (NM_001305158, intron 12 of 14)	37386.0	NM_001305158	18613.0	Mm.343951	NM_008816	ENSMUSG00000020717	Pecam1	C85791|Cd31|PECAM-1|Pecam	platelet/endothelial cell adhesion molecule 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-184841445-2	chr1	184841345	184841545	+	907.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133684, intron 1 of 7)	intron (NM_133684, intron 1 of 7)	4402.0	NM_133684	67247.0	Mm.177724	NM_133684	ENSMUSG00000073481	Marc2	2810484M10Rik|Mosc2|mARC1	mitochondrial amidoxime reducing component 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-98510667-4	chr15	98510555	98510755	+	995.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9179.0	NR_034051	100217417.0	Mm.486440	NR_034051	ENSMUSG00000065336	Snora34	MBI-89	small nucleolar RNA, H/ACA box 34	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-55121569-3	chr11	55121428	55121628	+	696.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	G-rich|Low_complexity|Low_complexity	23543.0	NM_010299	14667.0	Mm.287807	NM_010299	ENSMUSG00000000594	Gm2a	AA408702|AW215435|GM2-AP|SAP-3	GM2 ganglioside activator protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-165640885-2	chr1	165640785	165640985	+	631.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6344.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-68897299-2	chr11	68897210	68897410	+	619.0	f0_c57.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-4256.0	NM_009080	19941.0	Mm.3229	NM_009080	ENSMUSG00000060938	Rpl26	SIG-20	ribosomal protein L26	protein-coding	2.1463248421086	1.56928264669988	1.36130065139303	1.81399703458139	1.4075811506066	0.983785230386675	0.966357509075898	1.60749967980168	-1.68131436719859	0.170845185820884	0.638454877027969
Merged-chr19-46600577-4	chr19	46600485	46600685	+	763.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146099, intron 1 of 3)	L1MB5|LINE|L1	1479.0	NM_146099	226178.0	Mm.329895	NM_146099	ENSMUSG00000047731	Wbp1l	D19Wsu162e|Opal1	WW domain binding protein 1 like	protein-coding	2.28718964306097	1.33350098894107	1.56197133092189	2.97055671000658	2.56831274623918	2.70463853326362	2.61142796347579	1.52814544624692	0.442892024316978	0.651802250679045	0.986416236213275
Merged-chr13-100678047-2	chr13	100677947	100678147	+	974.083374	f1_balb.idr|f1_c57bl6.idr	exon (NM_183115, exon 2 of 12)	exon (NM_183115, exon 2 of 12)	8566.0	NM_001168386	76041.0	Mm.23977	NM_183115	ENSMUSG00000048924	Ccdc125	5830436D01Rik|AL023012	coiled-coil domain containing 125	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-38728400-4	chr9	38728311	38728511	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145957, intron 9 of 18)	intron (NM_001145957, intron 9 of 18)	10143.0	NM_172767	67776.0	Mm.290950	NM_172767	ENSMUSG00000023186	Vwa5a	5830475I06Rik|AW552491|BCSC-1|E130119J22|Loh11cr2a	von Willebrand factor A domain containing 5A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-5083430-4	chr7	5083297	5083497	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010147, intron 2 of 11)	intron (NM_010147, intron 2 of 11)	3162.0	NM_001252454	13854.0	Mm.3091	NM_010147	ENSMUSG00000035203	Epn1	AA269831|Ibp1	epsin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-73351215-3	chr15	73351136	73351336	+	765.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358046, intron 2 of 34)	intron (NM_001358046, intron 2 of 34)	71955.0	NM_007982	14083.0	Mm.254494	NM_007982	ENSMUSG00000022607	Ptk2	FADK 1|FAK|FRNK|Fadk|p125FAK	PTK2 protein tyrosine kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-100282186-2	chr11	100282086	100282286	+	596.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12315.0	NM_212483	68239.0	Mm.158190	NM_212483	ENSMUSG00000053654	Krt42	2410039E07Rik|K17n|Ka22|ecat6	keratin 42	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-108636712-4	chr12	108636583	108636783	+	801.783325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163396, intron 2 of 14)	MIRb|SINE|MIR	930.0	NM_001163396	14026.0	Mm.238841	NM_007965	ENSMUSG00000021262	Evl	AI528774|b2b2600Clo	Ena-vasodilator stimulated phosphoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-87887796-2	chr3	87887696	87887896	+	588.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2234.0	NM_033573	94315.0	Mm.35089	NM_033573	ENSMUSG00000004895	Prcc	-	papillary renal cell carcinoma (translocation-associated)	protein-coding	-1.18832717429738	-1.16380929885254	-0.856565824811958	-1.18328408639367	-1.18787580914644	-1.16149229066421	-0.849604865165746	-1.18171197755832	0.0406512889656815	0.990321405100139	1
Merged-chr10-24150313-4	chr10	24150252	24150452	+	855.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016797, intron 1 of 9)	intron (NM_016797, intron 1 of 9)	1035.0	NM_016797	53331.0	Mm.248042	NM_016797	ENSMUSG00000019998	Stx7	AI315064|AI317144|AW107239|Syn7	syntaxin 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-115227694-3	chr6	115227576	115227776	+	764.611145	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111015, intron 1 of 12)	intron (NM_001111015, intron 1 of 12)	-11318.0	NM_001326560	20965.0	Mm.441431	NM_013681	ENSMUSG00000009394	Syn2	2900074L19Rik|AI836018|AI841723	synapsin II	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141478572-1	chr4	141478472	141478672	+	588.0	f1_c57bl6.idr	exon (NM_019763, exon 12 of 16)	exon (NM_019763, exon 12 of 16)	33899.0	NM_009541	22642.0	Mm.389590	NM_009541	ENSMUSG00000006215	Zbtb17	AA589413|Lp-1|Miz1|Zfp100|mZ13	zinc finger and BTB domain containing 17	protein-coding	3.47729105189173	3.07485683300571	2.97166633988859	2.974946417154	2.92463217234673	1.59577278973168	2.40280744276322	2.32695047471322	-1.38476310191001	0.0629875354027921	0.373258700903539
Merged-chr5-32013571-3	chr5	32013466	32013666	+	915.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144541, intron 10 of 11)	intron (NM_144541, intron 10 of 11)	-122906.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	3.48888285593804	3.23916483086681	3.70421345243005	3.03976837294396	2.90460945193651	2.55631922026891	3.79552321098007	3.74541485844804	-0.0497789602275233	0.934199737962333	0.998431161219273
Merged-chr11-75658366-2	chr11	75658266	75658466	+	649.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008659, exon 4 of 32)	exon (NM_008659, exon 4 of 32)	2351.0	NM_001080775	17913.0	Mm.234502	NM_008659	ENSMUSG00000017774	Myo1c	C80397|MMIb|MYO1E|NMI|mm1beta|myr2	myosin IC	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-21078259-2	chr1	21078159	21078359	+	592.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177409, intron 1 of 10)	intron (NM_177409, intron 1 of 10)	966.0	NM_177409	170829.0	Mm.185680	NM_177409	ENSMUSG00000041779	Tram2	C330003D03Rik	translocating chain-associating membrane protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-59600273-1	chr15	59600173	59600373	+	626.0	f1_balb.idr	intron (NM_026746, intron 6 of 6)	intron (NM_026746, intron 6 of 6)	-48381.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	2.07748618621228	1.62625706731875	1.3170893381531	2.83277812828717	2.63990707577712	2.70097073190058	1.80235006059516	2.61591172421047	0.819899167651633	0.388896650976732	0.878578793881975
Merged-chr15-36980318-2	chr15	36980218	36980418	+	588.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27084.0	NM_026521	68036.0	Mm.371631	NM_026521	ENSMUSG00000062397	Zfp706	3110006P09Rik|AA793007|AW536850|C77232|Znf706	zinc finger protein 706	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-73176423-2	chr14	73176323	73176523	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134083, intron 12 of 14)	intron (NM_134083, intron 12 of 14)	30428.0	NR_030459	751541.0		NR_030459	ENSMUSG00000076121	Mir687	Mirn687|mir-687|mmu-mir-687	microRNA 687	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-13415122-2	chr13	13415028	13415228	+	769.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	-21504.0	NM_031999	83924.0	Mm.379269	NM_031999	ENSMUSG00000021306	Gpr137b	AI788917|AU016435|AW546472|C730041E01|C80550|C80741|D13Abb1e|Tm7sf1	G protein-coupled receptor 137B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-149047485-2	chr4	149047385	149047585	+	604.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019781, intron 2 of 8)	intron (NM_019781, intron 2 of 8)	52327.0	NM_019781	56273.0	Mm.184172	NM_019781	ENSMUSG00000028975	Pex14	Pex14p|R75137	peroxisomal biogenesis factor 14	protein-coding	-0.98636673676577	-0.970012647363645	-0.981062430681435	-0.686267214584395	-0.517023662368924	-0.967502533196007	-0.978973616254493	-0.982712688893276	0.730251360213607	0.819753442490402	1
Merged-chr5-112277733-2	chr5	112277675	112277875	+	940.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001326590, intron 1 of 5)	(TG)n|Simple_repeat|Simple_repeat	1084.0	NM_009419	22022.0	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	1.1212145888328	0.837836977215192	1.21517651147069	1.75351830396555	1.13022250481805	1.43078168836203	0.826068860166194	1.92674248734198	0.426793369293829	0.749427804213176	0.998431161219273
Merged-chr13-51710934-4	chr13	51710824	51711024	+	968.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013660, intron 11 of 15)	intron (NM_013660, intron 11 of 15)	59216.0	NM_029279	75420.0	Mm.275981	NM_029279	ENSMUSG00000035139	Secisbp2	2210413N07Rik|2810012K13Rik|SBP2	SECIS binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21510193-4	chr9	21510158	21510358	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001324510)	promoter-TSS (NM_001324510)	-24.0	NR_136911	17083.0	Mm.196618	NM_010744	ENSMUSG00000032180	Tmed1	Il1rl1l|Ly84l|St2l	transmembrane p24 trafficking protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-19554029-4	chr10	19553937	19554137	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37912.0	NM_010511	15979.0	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-85663622-3	chr11	85663529	85663729	+	903.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138681, intron 24 of 25)	intron (NM_138681, intron 24 of 25)	56115.0	NR_045875	71489.0	Mm.442482	NR_045875	ENSMUSG00000086199	Bcas3os1	8430403D17Rik	breast carcinoma amplified sequence 3, opposite strand 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-18997616-3	chr2	18997527	18997727	+	908.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_024323)	promoter-TSS (NR_024323)	494.0	NM_008845	18718.0	Mm.313977	NM_008845	ENSMUSG00000026737	Pip4k2a	AW742916|Pip5k2a	phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-91684021-4	chr6	91683950	91684150	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009320)	promoter-TSS (NM_009320)	-17.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-67196483-2	chr17	67196361	67196561	+	719.75	f0_balb.idr|f1_balb.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	157998.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	3.87250468831126	3.88066234521199	3.75318162500873	2.88916327725232	3.95198923368085	2.17385106931941	4.04265215635822	4.31924295517837	0.263826167565344	0.658603937325128	0.98889496579679
Merged-chr5-103628688-3	chr5	103628579	103628779	+	846.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029415, intron 1 of 5)	intron (NM_029415, intron 1 of 5)	724.0	NM_029415	75750.0	Mm.7446	NM_029415	ENSMUSG00000029321	Slc10a6	8430417G17Rik|C78479|Soat	solute carrier family 10 (sodium/bile acid cotransporter family), member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-31080756-3	chr16	31080661	31080861	+	845.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198626, intron 1 of 3)	CpG	671.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140830606-4	chr5	140830510	140830710	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010302)	promoter-TSS (NM_010302)	-179.0	NM_010302	14673.0	Mm.370185	NM_010302	ENSMUSG00000000149	Gna12	AI414047|AI504261|Galpha12	guanine nucleotide binding protein, alpha 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-157536722-2	chr1	157536622	157536822	+	933.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159986, intron 8 of 25)	intron (NM_001159986, intron 8 of 25)	10552.0	NM_001159986	89867.0	Mm.87114	NM_033354	ENSMUSG00000026589	Sec16b	Lztr2|Rgpr|Rgpr-p117	SEC16 homolog B (S. cerevisiae)	protein-coding	1.65498408347696	2.10650484426437	1.26381566645383	1.58883473879456	2.08420038176677	1.99463909322024	2.59569339222503	1.59537330721449	1.34132326311268	0.19754592243528	0.679718702856214
Merged-chr1-37996310-1	chr1	37996210	37996410	+	631.0	f0_balb.idr	intron (NM_172054, intron 1 of 4)	MTD|LTR|ERVL-MaLR	898.0	NM_172054	98258.0	Mm.28438	NM_172054	ENSMUSG00000058407	Txndc9	AI098020|APACD	thioredoxin domain containing 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-77831476-4	chr15	77831381	77831581	+	912.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022410, intron 1 of 40)	intron (NM_022410, intron 1 of 40)	10694.0	NM_022410	17886.0	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-19907475-4	chr10	19907381	19907581	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008822, exon 1 of 10)	exon (NM_008822, exon 1 of 10)	193.0	NM_008822	18634.0	Mm.338363	NM_008822	ENSMUSG00000020003	Pex7	MmPEX7	peroxisomal biogenesis factor 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-61957762-2	chr9	61957662	61957862	+	956.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028748, intron 7 of 7)	intron (NM_028748, intron 7 of 7)	-10963.0	NM_024245	71819.0	Mm.259374	NM_024245	ENSMUSG00000032254	Kif23	3110001D19Rik|C87313|CHO1|Knsl5|MKLP-1|MKLP1	kinesin family member 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-67683807-4	chr10	67683702	67683902	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-111843.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-161876870-4	chr1	161876752	161876952	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357401)	promoter-TSS (NM_001357401)	-170.0	NM_001357402	226551.0	Mm.170002	NM_172645	ENSMUSG00000040297	Suco	4732491B11|AI848100|AU016931|Opt	SUN domain containing ossification factor	protein-coding	5.83932988670439	5.69471429671697	7.33308703299715	5.81694999112215	5.96424119762412	6.63445740594953	7.0285039611953	4.65787969097968	-0.0453855903353176	0.945347884322701	0.998431161219273
Merged-chr5-105346062-2	chr5	105345962	105346162	+	725.333313	f1_balb.idr|f1_c57bl6.idr	intron (NR_132129, intron 1 of 10)	intron (NR_132129, intron 1 of 10)	410.0	NM_001039647	634650.0	Mm.458435	NM_001039647	ENSMUSG00000092021	Gbp11	EG634650|Gm7141	guanylate binding protein 11	protein-coding	-1.84371485578039	-1.81332821174849	-1.82251738371298	-1.83006564316449	-1.84158176955426	-1.81133687985023	-1.5312619047181	-1.82871450833159	1.60090129203521	0.64914985597185	1
Merged-chr7-16877050-2	chr7	16876950	16877150	+	712.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081655, intron 1 of 3)	intron (NM_001081655, intron 1 of 3)	1733.0	NM_001081655	629378.0	Mm.491123	NM_001081655	ENSMUSG00000078794	Dact3	EG666671|naa-3	dishevelled-binding antagonist of beta-catenin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-85684492-2	chr11	85684392	85684592	+	941.3000490000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_138681, intron 24 of 25)	intron (NM_138681, intron 24 of 25)	35252.0	NR_045875	71489.0	Mm.442482	NR_045875	ENSMUSG00000086199	Bcas3os1	8430403D17Rik	breast carcinoma amplified sequence 3, opposite strand 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-108034311-3	chr5	108034184	108034384	+	872.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31390.0	NM_001359088	17765.0	Mm.257149	NM_013827	ENSMUSG00000029267	Mtf2	9230112N11Rik|AA537621|C76717|M96|Pcl2	metal response element binding transcription factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-73457138-2	chr15	73457038	73457238	+	590.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33947.0	NM_001358045	14083.0	Mm.254494	NM_007982	ENSMUSG00000022607	Ptk2	FADK 1|FAK|FRNK|Fadk|p125FAK	PTK2 protein tyrosine kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118144334-1	chr11	118144234	118144434	+	544.0	f1_balb.idr	Intergenic	Intergenic	-15115.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-63176185-2	chr13	63176085	63176285	+	943.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289926, intron 7 of 15)	intron (NM_001289926, intron 7 of 15)	-63844.0	NR_110520	72061.0	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-25022886-2	chr2	25022786	25022986	+	617.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146251, intron 20 of 34)	B2_Mm2|SINE|B2	-31493.0	NM_001177654	56876.0	Mm.42956	NM_020276	ENSMUSG00000006476	Nsmf	Jacob|Nelf	NMDA receptor synaptonuclear signaling and neuronal migration factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-62077061-1	chr14	62076961	62077161	+	556.0	f0_balb.idr	Intergenic	Intergenic	215918.0	NM_173419	239133.0	Mm.127330	NM_173419	ENSMUSG00000048281	Dleu7	BC038059	deleted in lymphocytic leukemia, 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-55593150-4	chr13	55593037	55593237	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026211)	promoter-TSS (NM_026211)	2.0	NM_026211	67511.0	Mm.45233	NM_026211	ENSMUSG00000058569	Tmed9	2400003B06Rik	transmembrane p24 trafficking protein 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-78139221-3	chr10	78139077	78139277	+	862.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30591.0	NM_138601	28295.0	Mm.268691	NM_138601	ENSMUSG00000053329	D10Jhu81e	C21orf33|ES1	DNA segment, Chr 10, Johns Hopkins University 81 expressed	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-13820453-2	chr16	13820353	13820553	+	709.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346109, intron 1 of 7)	intron (NM_001346109, intron 1 of 7)	1202.0	NM_001346111	18203.0	Mm.380410	NM_010946	ENSMUSG00000022681	Ntan1	PNAA|PNAD	N-terminal Asn amidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3796108-3	chr4	3796015	3796215	+	887.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39540.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-3539075-3	chr13	3538954	3539154	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008112, intron 1 of 10)	intron (NM_008112, intron 1 of 10)	979.0	NM_008112	14569.0	Mm.153226	NM_008112	ENSMUSG00000021218	Gdi2	GDI-B|GDIB|Gdi3	guanosine diphosphate (GDP) dissociation inhibitor 2	protein-coding	2.38115440610187	1.95333672533415	2.21956265237898	2.0118284217821	2.7282265515326	3.12670765427121	2.37151643752375	2.16928496529127	1.10726476227036	0.173093575131156	0.640902961210202
Merged-chr2-126788920-2	chr2	126788820	126789020	+	581.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur3|SINE|Alu	-5460.0	NM_029163	75083.0	Mm.389373	NM_029163	ENSMUSG00000027364	Usp50	1700086G18Rik|4930511O11Rik	ubiquitin specific peptidase 50	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-114311422-3	chr7	114311348	114311548	+	656.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35332.0	NM_011965	26440.0	Mm.121265	NM_011965	ENSMUSG00000030751	Psma1	C2|HC2|Pros-30|alpha-type	proteasome (prosome, macropain) subunit, alpha type 1	protein-coding	1.23164676939458	0.665911442879012	1.25516188919439	0.648299015826315	1.1502448782431	0.668134675330799	1.2672097027885	1.10604871063772	0.355221680372614	0.818071470622094	0.998431161219273
Merged-chr14-30550032-4	chr14	30549907	30550107	+	972.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009388, intron 1 of 13)	intron (NM_009388, intron 1 of 13)	876.0	NM_009388	21881.0	Mm.290692	NM_009388	ENSMUSG00000021957	Tkt	p68	transketolase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-107828808-2	chr13	107828727	107828927	+	779.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 2 of 14)	MT2A|LTR|ERVL	61237.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	1.41606193731581	1.25606602173139	0.778100706369218	1.26100779150873	0.727402758220417	0.595809798502553	0.585618154662388	0.760960491017691	-3.10190321847595	0.0539520247862561	0.340334591685331
Merged-chr10-41930077-3	chr10	41929957	41930157	+	956.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034858, intron 12 of 17)	RSINE1|SINE|B4	42618.0	NM_001013370	140742.0	Mm.139418	NM_001013370	ENSMUSG00000038332	Sesn1	1110002G11Rik|AU044290|Pa26|Sest1	sestrin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-48862099-3	chr13	48862002	48862202	+	967.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011078, intron 1 of 21)	ORR1F|LTR|ERVL-MaLR	8783.0	NM_011078	18676.0	Mm.486213	NM_011078	ENSMUSG00000038025	Phf2	GRC5	PHD finger protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-35658447-3	chr8	35658350	35658550	+	857.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081279, intron 1 of 2)	ORR1E|LTR|ERVL-MaLR	-69430.0	NR_040376	100504714.0	Mm.381744	NR_040376	ENSMUSG00000097357	Gm16793	-	predicted gene, 16793	ncRNA	3.41659207192303	3.21910364256021	1.94309178002129	3.72700151375987	4.05019083948293	4.3118274215005	2.20433680318852	3.22756679285237	0.672751340344217	0.33605727428886	0.836517671559698
Merged-chr10-77986270-2	chr10	77986170	77986370	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_008826)	TTS (NM_008826)	7620.0	NM_026431	67884.0	Mm.297512	NM_026431	ENSMUSG00000020284	1810043G02Rik	AV026620|D10Jhu13e	RIKEN cDNA 1810043G02 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-53793232-2	chr11	53793132	53793332	+	551.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_033332, intron 3 of 3)	RMER15|LTR|ERVL	22759.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-36189522-2	chr17	36189422	36189622	+	779.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008208, intron 2 of 5)	intron (NM_008208, intron 2 of 5)	629.0	NM_008208	15043.0	Mm.426002	NM_008208	ENSMUSG00000054128	H2-T3	H-2T3|H2-Tw3|MumuTL|TL	histocompatibility 2, T region locus 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3368419-2	chr19	3368319	3368519	+	709.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013495, intron 9 of 18)	B3A|SINE|B2	-20438.0	NM_001039658	17771.0	Mm.209941	NM_010841	ENSMUSG00000024905	Tesmin	Mtl5	testis expressed metallothionein like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-120524369-4	chr1	120524263	120524463	+	984.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19339.0	NM_010766	17167.0	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	4.51468723031268	4.38816788102679	3.8391232085924	4.40733252871509	3.75670393046955	2.97279333534179	1.77787496450663	3.5249657528511	-1.56130874673581	0.00599560621076093	0.0763907616625466
Merged-chr14-76010901-4	chr14	76010823	76011023	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026816)	promoter-TSS (NM_026816)	-58.0	NM_026816	68705.0	Mm.20415	NM_026816	ENSMUSG00000067995	Gtf2f2	1110031C13Rik|AI326315	general transcription factor IIF, polypeptide 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-99183033-2	chr10	99182933	99183133	+	726.166626	f1_balb.idr|f1_c57bl6.idr	intron (NR_153333, intron 11 of 12)	B1_Mur4|SINE|Alu	74898.0	NM_015737	14426.0	Mm.314	NM_015737	ENSMUSG00000090035	Galnt4	AV011803	polypeptide N-acetylgalactosaminyltransferase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71207414-4	chr17	71207285	71207485	+	849.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164885, intron 1 of 19)	PB1D10|SINE|Alu	2731.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-120666723-2	chr10	120666623	120666823	+	701.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-99009.0	NR_038000	70874.0	Mm.427286	NR_038000	ENSMUSG00000044544	4921513I03Rik	-	RIKEN cDNA 4921513I03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-71546293-2	chr2	71546193	71546393	+	883.416626	f1_balb.idr|f1_c57bl6.idr	exon (NM_010054, exon 1 of 3)	exon (NM_010054, exon 1 of 3)	461.0	NM_010054	13392.0	Mm.3896	NM_010054	ENSMUSG00000023391	Dlx2	AW121999|Dlx-2|Tes-1	distal-less homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-142577286-4	chr3	142577179	142577379	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	16923.0	NM_001289493	55932.0	Mm.439718	NM_018734	ENSMUSG00000028268	Gbp3	AW228655|GBP-3|GBP-4|Gbp4	guanylate binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-6105730-2	chr17	6105630	6105830	+	691.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1100.0	NM_001103181	68842.0	Mm.449307	NM_054040	ENSMUSG00000034377	Tulp4	1110057P05Rik|2210038L17Rik|Tusp	tubby like protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-55892708-2	chr17	55892608	55892808	+	655.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145490, intron 1 of 3)	intron (NM_145490, intron 1 of 3)	615.0	NM_145490	224893.0	Mm.294853	NM_145490	ENSMUSG00000003198	Zfp959	-	zinc finger protein 959	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-72549539-4	chr15	72549440	72549640	+	879.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3261.0	NM_001033876	223604.0	Mm.386856	NM_001033876	ENSMUSG00000036760	Kcnk9	Task3	potassium channel, subfamily K, member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-38694151-2	chr6	38694051	38694251	+	682.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31082.0	NM_001101507	665180.0	Mm.349066	NM_001101507	ENSMUSG00000079598	Clec2l	AI414054|AW122724|Gm1064	C-type lectin domain family 2, member L	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-60700304-2	chr18	60700198	60700398	+	603.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001348100, intron 7 of 14)	intron (NM_001348100, intron 7 of 14)	27268.0	NM_001348103	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	1.73093061816379	1.01162536760142	2.01297225573075	0.967129430653444	1.85407506140314	1.84949628987598	2.61981049882297	0.970630714279411	1.19784033554553	0.336739430165383	0.83703930093451
Merged-chr10-116584356-2	chr10	116584256	116584456	+	557.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2845.0	NM_001359249	72068.0	Mm.351553	NM_028082	ENSMUSG00000020166	Cnot2	2600016M12Rik|2810470K03Rik|AA537049|AA959607|AW557563|C79650	CCR4-NOT transcription complex, subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-21787395-4	chr13	21787298	21787498	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178202)	promoter-TSS (NM_178202)	-90.0	NM_178202	319188.0	Mm.264645	NM_178202	ENSMUSG00000069308	Hist1h2bp	-	histone cluster 1, H2bp	protein-coding	5.42602295493914	5.7418904719469	4.43254505438972	5.34380067476684	5.27624244497129	5.2029150191406	5.33123317429755	5.62043130733232	0.0646320048579037	0.840163696351438	0.998431161219273
Merged-chr17-70748167-4	chr17	70748039	70748239	+	930.0380859999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347411, intron 9 of 14)	intron (NM_001347411, intron 9 of 14)	98638.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	2.15516015113597	1.14541717021214	1.75508810869783	1.44691788342334	1.39768187328435	1.53460028471596	2.0704373460036	1.59185295181675	-0.0645376097463048	0.954579703342441	0.998431161219273
Merged-chr10-127311237-4	chr10	127311138	127311338	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003913, intron 1 of 20)	intron (NM_001003913, intron 1 of 20)	548.0	NM_001003913	216443.0	Mm.28173	NM_001003913	ENSMUSG00000040354	Mars	Metrs|Mtrns	methionine-tRNA synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-40528100-2	chr3	40528000	40528200	+	654.6999509999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1E2|LTR|ERVL-MaLR	-5188.0	NR_040445	100040882.0	Mm.272869	NR_040445	ENSMUSG00000037884	1700017G19Rik	-	RIKEN cDNA 1700017G19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-27030673-4	chr9	27030575	27030775	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178027)	promoter-TSS (NM_178027)	500.0	NM_178113	78658.0	Mm.251777	NM_178113	ENSMUSG00000035024	Ncapd3	2810487N22Rik|4632407J06Rik|AI195468|AU018739|B130055D15Rik|mKIAA0056	non-SMC condensin II complex, subunit D3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126975572-4	chr7	126975496	126975696	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026638)	promoter-TSS (NM_026638)	250.0	NM_001362232	381922.0	Mm.304201	NM_001362232		Cdiptos	D830044I16Rik	CDIP transferase, opposite strand	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-28834901-3	chr19	28834762	28834962	+	803.472229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009199)	promoter-TSS (NM_009199)	-304.0	NM_009199	20510.0	Mm.246670	NM_009199	ENSMUSG00000024935	Slc1a1	D130048G10Rik|EAAC1|EAAC2|EAAT3|MEAAC1	solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-54162860-2	chr12	54162760	54162960	+	556.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41014.0	NM_028133	112407.0	Mm.133037	NM_028133	ENSMUSG00000035105	Egln3	2610021G09Rik|AI505553|AI648162|Hif-p4h-3|Phd3|SM-20	egl-9 family hypoxia-inducible factor 3	protein-coding	-0.375269033747425	-0.148046842822012	-0.619894551678402	-0.622288879769406	-0.369205428849449	-0.616072182607796	-0.619208335889141	-0.621871284044096	-1.45044606468253	0.594808305303685	1
Merged-chr1-156537861-4	chr1	156537698	156537898	+	913.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-20989.0	NM_009595	11352.0	Mm.329515	NM_009595	ENSMUSG00000026596	Abl2	AA536808|Abll|Arg	v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-79884013-2	chr12	79883913	79884113	+	572.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RCHARR1|DNA|hAT-Charlie	40720.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65741139-3	chr9	65741037	65741237	+	937.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172536, intron 2 of 9)	intron (NM_172536, intron 2 of 9)	64589.0	NM_001301307	18247.0	Mm.116749	NM_010952	ENSMUSG00000040652	Oaz2	AZ-2|AZ2|Oaz2-ps|Sez15	ornithine decarboxylase antizyme 2	protein-coding	0.0532058580847212	0.0733036671352235	0.548162333708034	0.0616800804627813	0.0544704080527089	0.0747750712087746	0.558116356677238	0.91021543583004	1.69031623341398	0.437616205069917	1
Merged-chr6-31387654-2	chr6	31387554	31387754	+	721.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_040300, intron 2 of 2)	MTE2a|LTR|ERVL-MaLR	11119.0	NR_040300	100503869.0	Mm.370532	NR_040300	ENSMUSG00000086212	Mkln1os	Gm13845	muskelin 1, intracellular mediator containing kelch motifs, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-43385326-4	chr11	43385257	43385457	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10896.0	NR_029558	387164.0		NR_029558	ENSMUSG00000065601	Mir146	Mirn146|miR-146a|mmu-mir-146	microRNA 146	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-92353185-2	chr5	92353083	92353283	+	692.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310664, intron 2 of 10)	RLTR13D2|LTR|ERVK	-4294.0	NM_021274	15945.0	Mm.877	NM_021274	ENSMUSG00000034855	Cxcl10	C7|CRG-2|INP10|IP-10|IP10|Ifi10|Scyb10|gIP-10|mob-1	chemokine (C-X-C motif) ligand 10	protein-coding	0.823069399871004	0.88197703407676	1.58737496804607	1.65480748300487	1.57250851436274	0.886115132449155	2.26609350125562	1.41054868826127	1.07990266952894	0.422955953067296	0.900322118218157
Merged-chr6-113493308-2	chr6	113493208	113493408	+	661.166626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_133930)	TTS (NM_133930)	8510.0	NM_172487	210673.0	Mm.133060	NM_172487	ENSMUSG00000045009	Prrt3	6330505P20|B230206N24Rik	proline-rich transmembrane protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100606189-2	chr7	100606089	100606289	+	565.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_003559, intron 1 of 7)	(TC)n|Simple_repeat|Simple_repeat	-1397.0	NM_024287	19346.0	Mm.28650	NM_024287	ENSMUSG00000030704	Rab6a	2610028L11Rik|AA419671|Rab6	RAB6A, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99880326-2	chr15	99880226	99880426	+	542.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4870.0	NM_001113545	65970.0	Mm.33207	NM_023063	ENSMUSG00000023022	Lima1	Eplin	LIM domain and actin binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-71440727-4	chr6	71440600	71440800	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024288)	promoter-TSS (NM_024288)	-63.0	NM_024288	68477.0	Mm.28474	NM_024288	ENSMUSG00000002222	Rmnd5a	1110007A06Rik|AJ237586|AW125795|Gid2|MTA.D02.090	required for meiotic nuclear division 5 homolog A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100845621-4	chr7	100845524	100845724	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_177073)	TTS (NM_177073)	17789.0	NM_001358914	320100.0	Mm.40336	NM_177073	ENSMUSG00000008318	Relt	E430021K24Rik|Tnfrsf19l	RELT tumor necrosis factor receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-5092028-3	chr6	5091866	5092066	+	742.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181595, intron 6 of 15)	intron (NM_181595, intron 6 of 15)	101980.0	NM_011134	18979.0	Mm.237657	NM_011134	ENSMUSG00000002588	Pon1	Pon	paraoxonase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-85037828-3	chr6	85037713	85037913	+	696.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177077, intron 1 of 21)	intron (NM_177077, intron 1 of 21)	31700.0	NM_177077	75914.0	Mm.159621	NM_177077	ENSMUSG00000033769	Exoc6b	4930569O18Rik|G430127E12Rik|Sec15b|Sec15l2|mKIAA0919	exocyst complex component 6B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80378952-2	chr10	80378852	80379052	+	632.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8699.0	NM_198615	237400.0	Mm.268389	NM_198615	ENSMUSG00000048696	Mex3d	BC059858|Rkhd1	mex3 RNA binding family member D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-31696489-2	chr16	31696389	31696589	+	602.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357281, intron 1 of 22)	intron (NM_001357281, intron 1 of 22)	941.0	NM_001357281	13383.0	Mm.382	NM_007862	ENSMUSG00000022770	Dlg1	B130052P05Rik|Dlgh1|E-dlg/SAP97|SAP-97|SAP97|mKIAA4187	discs large MAGUK scaffold protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-157465324-2	chr1	157465224	157465424	+	564.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033284, intron 5 of 9)	intron (NM_001033284, intron 5 of 9)	6756.0	NM_001356419	226527.0	Mm.215960	NM_001033284	ENSMUSG00000033488	Cryzl2	-	crystallin zeta like 2	protein-coding	0.116036756329564	-0.247361825988366	-0.251992079906443	-0.255564463422074	0.539587457666202	-0.246318079087906	-0.0687609406279098	-0.25494036957034	1.62788402537647	0.503317547386049	1
Merged-chr2-27512588-2	chr2	27512488	27512688	+	879.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13C1|LTR|ERVK	-2559.0	NM_080848	140858.0	Mm.28265	NM_080848	ENSMUSG00000026917	Wdr5	2410008O07Rik|AA408785|AA960360|Big|Big-3	WD repeat domain 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-14233596-2	chr2	14233496	14233696	+	848.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008625, intron 1 of 29)	intron (NM_008625, intron 1 of 29)	4182.0	NM_008625	17533.0	Mm.2019	NM_008625	ENSMUSG00000026712	Mrc1	AW259686|CD206|MR	mannose receptor, C type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-88631171-2	chr8	88631023	88631223	+	636.049988	f1_balb.idr|f1_c57bl6.idr	intron (NM_027840, intron 2 of 3)	intron (NM_027840, intron 2 of 3)	5005.0	NM_027840	71607.0	Mm.270607	NM_027840	ENSMUSG00000031662	Snx20	9130017C17Rik	sorting nexin 20	protein-coding	1.24102861010812	1.06713193292544	1.34972464947947	1.30972913547746	1.36266131284637	1.07372586663249	1.87942433757252	0.826216384559492	0.448761632926773	0.727310837199992	0.998431161219273
Merged-chr10-99262423-1	chr10	99262323	99262523	+	1000.0	f0_balb.idr	promoter-TSS (NM_026268)	promoter-TSS (NM_026268)	-808.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-149280984-4	chr3	149280863	149281063	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_040591)	TTS (NR_040591)	6226.0	NR_040591	381482.0	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA	3.65265065216135	4.09776179718517	3.73294417783797	4.36057830187343	4.50799632382277	5.01754804908417	3.12878053983683	4.23285984077986	0.51649622843116	0.294851969722953	0.798191705447
Merged-chr11-98768373-2	chr11	98768273	98768473	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001313983, exon 10 of 10)	exon (NM_001313983, exon 10 of 10)	7004.0	NM_145434	217166.0	Mm.390397	NM_145434	ENSMUSG00000020889	Nr1d1	A530070C09Rik|R75201	nuclear receptor subfamily 1, group D, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-130834495-4	chr7	130834385	130834585	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	-31239.0	NM_133942	101476.0	Mm.323554	NM_133942	ENSMUSG00000040268	Plekha1	AA960558|C920009D07Rik|TAPP1	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5741989-4	chr19	5741878	5742078	+	874.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_008520, exon 2 of 28)	5' UTR (NM_008520, exon 2 of 28)	1074.0	NM_008520	16998.0	Mm.182396	NM_008520	ENSMUSG00000024940	Ltbp3	Ltbp2|mFLJ00070	latent transforming growth factor beta binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-38344695-1	chr9	38344595	38344795	+	550.0	f1_balb.idr	Intergenic	Lx2B2|LINE|L1	-4390.0	NM_146871	258871.0	Mm.377729	NM_146871	ENSMUSG00000094588	Olfr898	MOR170-3	olfactory receptor 898	protein-coding	0.230641249251358	0.24940785502494	0.243254768541192	0.655835192186789	0.607482558129356	0.250795583274843	0.698826729084378	0.863367340596998	1.87509895281681	0.339735443476428	1
Merged-chr7-4034455-4	chr7	4034358	4034558	+	854.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302675, intron 2 of 6)	Lx5b|LINE|L1	28746.0	NM_001302677	52855.0	Mm.290880	NM_178611	ENSMUSG00000055541	Lair1	5133400O11Rik|BB115266|D7Bwg0421e|Lair-1	leukocyte-associated Ig-like receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-81141032-1	chr3	81140932	81141132	+	636.0	f0_balb.idr	intron (NM_001357746, intron 2 of 6)	URR1A|DNA|hAT-Charlie	104616.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	-1.26687315729308	-1.51144556179868	-1.52074032698608	-1.52837532385482	-1.39377469321613	-1.50943134740853	-1.5186361958831	-1.52700866306571	-0.563662181339258	0.873093626595385	1
Merged-chr13-101918378-4	chr13	101918284	101918484	+	999.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-150167.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-41691238-2	chr10	41691138	41691338	+	640.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358562, intron 2 of 47)	intron (NM_001358562, intron 2 of 47)	25225.0	NM_001358562	75973.0	Mm.228517	NM_029493	ENSMUSG00000075225	Ccdc162	5033413D22Rik|Ccdc162p|Gm29096|Gm61|Gm6976	coiled-coil domain containing 162	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-47683083-3	chr9	47683006	47683206	+	962.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	135102.0	NR_046048	100038460.0	Mm.447649	NR_046048		Gm10677	-	predicted gene 10677	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-159900141-4	chr2	159900028	159900228	+	985.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47213.0	NR_040498	71081.0	Mm.383491	NR_040498	ENSMUSG00000085198	4933416E03Rik	-	RIKEN cDNA 4933416E03 gene	ncRNA	3.72582825026556	3.65226851572521	4.76084378844151	4.08273806083873	3.4309769530373	2.98632771656621	3.79560008578061	2.77868331280327	-1.1900903476	0.0278233147379894	0.225195509290189
Merged-chr4-126227216-4	chr4	126227092	126227292	+	929.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24482.0	NM_146153	230753.0	Mm.29813	NM_146153	ENSMUSG00000043962	Thrap3	9330151F09Rik|B230333E16Rik|Trap150	thyroid hormone receptor associated protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-128139691-2	chr7	128139591	128139791	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021334, intron 14 of 29)	MTD|LTR|ERVL-MaLR	10123.0	NM_021334	16411.0	Mm.22378	NM_021334	ENSMUSG00000030789	Itgax	AI449405|Cd11c|Cr4|N418	integrin alpha X	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101084762-2	chr11	101084662	101084862	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001305982, exon 4 of 10)	exon (NM_001305982, exon 4 of 10)	2197.0	NR_155015	71743.0	Mm.182271	NM_027896	ENSMUSG00000001755	Coasy	1300003G02Rik|Dpck|Ppat|Ukr1	Coenzyme A synthase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127320300-4	chr10	127320241	127320441	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1623.0	NM_001285785	216445.0	Mm.227198	NM_146011	ENSMUSG00000040345	Arhgap9	AU043488	Rho GTPase activating protein 9	protein-coding	-1.06997269762433	-1.30473905204845	-1.3145270772132	-1.32256725251374	-1.06385251204029	-1.30261794616352	-1.3123112828633	-1.32112806497905	0.0394047164033882	0.991001358494878	1
Merged-chr17-47864686-4	chr17	47864569	47864769	+	991.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29978.0	NM_001109973	17240.0	Mm.329100	NM_010783	ENSMUSG00000032717	Mdfi	I-mf|I-mfa	MyoD family inhibitor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-3987316-2	chr15	3987216	3987416	+	721.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145930, intron 5 of 5)	ORR1C2|LTR|ERVL-MaLR	-7743.0	NM_134099	106052.0	Mm.234191	NM_134099	ENSMUSG00000022184	Fbxo4	1700096C12Rik|AI851261|AW494535|Fbx4	F-box protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85337540-2	chr12	85337440	85337640	+	887.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_145138, intron 1 of 21)	intron (NM_145138, intron 1 of 21)	1822.0	NM_145138	217718.0	Mm.29071	NM_145138	ENSMUSG00000034290	Nek9	C130021H08Rik	NIMA (never in mitosis gene a)-related expressed kinase 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-36243871-3	chr2	36243700	36243900	+	865.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008969, intron 8 of 10)	intron (NM_008969, intron 8 of 10)	13374.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-93823729-4	chr2	93823655	93823855	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1187.0	NM_001355076	14043.0	Mm.4336	NM_010163	ENSMUSG00000027198	Ext2	AI893565	exostoses (multiple) 2	protein-coding	-0.546788269889671	0.101514345566832	-0.538384471439815	-0.541540539039748	-0.546006965485395	-0.0132890237707241	-0.537482935337208	-0.5409889094789	-0.385487687419026	0.889913942124054	1
Merged-chr15-79739416-2	chr15	79739316	79739516	+	851.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_194342, intron 2 of 16)	intron (NM_194342, intron 2 of 16)	3120.0	NM_194342	223697.0	Mm.202715	NM_194342	ENSMUSG00000042524	Sun2	B230369L08Rik|C030011B15|Unc84b	Sad1 and UNC84 domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-31223960-2	chr17	31223860	31224060	+	734.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177823, intron 6 of 13)	intron (NM_177823, intron 6 of 13)	15894.0	NM_177823	328795.0	Mm.387930	NM_177823	ENSMUSG00000042345	Ubash3a	5830413C03Rik|C330001M22|Sts-2|TULA|TULA-1	ubiquitin associated and SH3 domain containing, A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-121309951-2	chr10	121309851	121310051	+	550.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361015, intron 2 of 12)	intron (NM_001361015, intron 2 of 12)	1445.0	NM_029057	74694.0	Mm.233833	NM_029057	ENSMUSG00000052302	Tbc1d30	4930505D03Rik|9530013E20Rik	TBC1 domain family, member 30	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-81046971-2	chr3	81046871	81047071	+	872.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019971, intron 1 of 5)	intron (NM_019971, intron 1 of 5)	10555.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	1.90201581975196	2.24415275681385	1.95869753850855	1.3298298936874	1.81960648598442	1.77158012068432	1.85236809297003	1.12107718429609	-0.668621075824258	0.536256342474827	0.953323426463389
Merged-chr14-106787563-4	chr14	106787469	106787669	+	700.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-301049.0	NR_045938	73631.0	Mm.48862	NR_045938	ENSMUSG00000099794	1700128A07Rik	-	RIKEN cDNA 1700128A07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-79131449-4	chr2	79131345	79131545	+	874.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-123981.0	NM_010576	16401.0	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-108694171-4	chr5	108694082	108694282	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164259)	promoter-TSS (NM_001164259)	-47.0	NM_001164259	116701.0	Mm.35691	NM_054071	ENSMUSG00000008090	Fgfrl1	FGFR5|FGFR5beta|FGFR5gamma	fibroblast growth factor receptor-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-8689047-4	chr11	8688936	8689136	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24501.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-45249188-2	chr9	45249088	45249288	+	885.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001198971, exon 5 of 5)	3' UTR (NM_001198971, exon 5 of 5)	17519.0	NR_106054	102466803.0		NR_106054	ENSMUSG00000098361	Mir7086	Gm27643|mmu-mir-7086	microRNA 7086	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-53415557-4	chr15	53415469	53415669	+	696.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69386.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-122748580-3	chr10	122748481	122748681	+	893.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110218, intron 1 of 9)	intron (NM_001110218, intron 1 of 9)	69266.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101547902-4	chr7	101547778	101547978	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	7924.0	NM_007490	11871.0	Mm.439746	NM_007490	ENSMUSG00000092517	Art2a-ps	ARTC2|Art2a|Ly92a|Rt-6|Rt6|Rt6-1	ADP-ribosyltransferase 2a, pseudogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-11866277-3	chr18	11866145	11866345	+	937.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022021, intron 1 of 8)	ORR1A3-int|LTR|ERVL-MaLR	-25807.0	NR_035447	100316686.0		NR_035447	ENSMUSG00000084565	Mir1901	Mirn1901|mmu-mir-1901	microRNA 1901	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139364789-4	chr5	139364646	139364846	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028469, intron 2 of 4)	intron (NM_028469, intron 2 of 4)	4999.0	NR_029768	723898.0		NR_029768	ENSMUSG00000065593	Mir339	Mirn339|mir-339|mmu-mir-339	microRNA 339	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127480594-4	chr7	127480491	127480691	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2c|LINE|L2	-4630.0	NM_010183	14123.0	Mm.323505	NM_010183	ENSMUSG00000042423	Fbrs	Fbs|Fbs1	fibrosin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-58593363-4	chr13	58593279	58593479	+	905.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022317, intron 1 of 17)	MER67A|LTR|ERV1	17498.0	NM_022317	114304.0	Mm.18188	NM_022317	ENSMUSG00000021553	Slc28a3	Cnt3	solute carrier family 28 (sodium-coupled nucleoside transporter), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-163900345-3	chr1	163900236	163900436	+	858.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305643, intron 19 of 19)	intron (NM_001305643, intron 19 of 19)	-28764.0	NM_001286002	240880.0	Mm.389213	NM_028776	ENSMUSG00000026584	Scyl3	1200016D23Rik|6030457O16|AW214499|Pace1	SCY1-like 3 (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-46155686-2	chr17	46155586	46155786	+	633.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-2135.0	NM_025649	66591.0	Mm.272024	NM_025649	ENSMUSG00000034509	Mad2l1bp	0610009D16Rik|2510031P20Rik|AU018945|AW550977|C76045|CMT2A|CMT2B|Mad2lbp|mKIAA0110	MAD2L1 binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-36511505-1	chr12	36511405	36511605	+	596.0	f0_c57.idr	intron (NM_001289503, intron 6 of 9)	intron (NM_001289503, intron 6 of 9)	95889.0	NR_037309	100499526.0		NR_037309	ENSMUSG00000092917	Mir3472	mmu-mir-3472	microRNA 3472	ncRNA	0.525372275139159	0.207230559200737	0.357707335141227	0.199080182144179	0.194140485563526	0.759968311512725	0.616599231709482	0.345053496470956	1.34145002115929	0.482446426308305	1
Merged-chr18-56572939-4	chr18	56572868	56573068	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019996)	promoter-TSS (NM_019996)	-29.0	NM_001127338	110695.0	Mm.30250	NM_138600	ENSMUSG00000053644	Aldh7a1	Atq1|D18Wsu181e	aldehyde dehydrogenase family 7, member A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127665395-6	chr10	127665267	127665467	+	891.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008668, intron 1 of 6)	intron (NM_008668, intron 1 of 6)	1336.0	NM_001122895	17937.0	Mm.336898	NM_008668	ENSMUSG00000025402	Nab2	AI451907	Ngfi-A binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-100601302-7	chr13	100601220	100601420	+	925.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038602, intron 3 of 6)	intron (NM_001038602, intron 3 of 6)	15624.0	NM_178410	218518.0	Mm.25300	NM_178410	ENSMUSG00000021636	Marveld2	BC003296|MARVD2|Mrvldc2|Tric|Trica|Tricb|Tricc	MARVEL (membrane-associating) domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-37825974-4	chr13	37825869	37826069	+	951.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033615)	promoter-TSS (NR_033615)	-69.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107611768-4	chr9	107611666	107611866	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2525.0	NM_001291539	20347.0	Mm.4083	NM_009153	ENSMUSG00000057969	Sema3b	SemA|Semaa|sema5|semaV	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-8481909-2	chr16	8481809	8482009	+	823.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146247, intron 3 of 10)	(CTCTG)n|Simple_repeat|Simple_repeat	11096.0	NM_146247	239706.0	Mm.214953	NM_146247	ENSMUSG00000039345	Mettl22	-	methyltransferase like 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32919287-2	chr2	32919187	32919387	+	658.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_146119, intron 6 of 13)	intron (NM_146119, intron 6 of 13)	41968.0	NM_199302	227738.0	Mm.248037	NM_199302	ENSMUSG00000026792	Lrsam1	-	leucine rich repeat and sterile alpha motif containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53070689-2	chr4	53070589	53070789	+	674.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 25 of 49)	intron (NM_013454, intron 25 of 49)	58809.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-31900118-2	chr5	31900018	31900218	+	850.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144541, intron 6 of 11)	Charlie20a|DNA|hAT-Charlie	202068.0	NM_144541	107976.0	Mm.482126	NM_144541	ENSMUSG00000052139	Babam2	6030405P19Rik|AI429776|B830038C02Rik|Bre	BRISC and BRCA1 A complex member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-180970556-2	chr2	180970438	180970638	+	958.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_145760, intron 2 of 13)	intron (NM_145760, intron 2 of 13)	3238.0	NM_001177706	228998.0	Mm.33765	NM_145760	ENSMUSG00000027575	Arfgap1	AI115377|Arf1gap	ADP-ribosylation factor GTPase activating protein 1	protein-coding	1.68372615760039	2.11503170947186	1.24272551720298	1.77899472903131	1.59093318256641	1.91755520492089	1.2505094533657	1.00951119289911	-0.803594578222661	0.489340909910057	0.934196282555563
Merged-chr2-51014836-2	chr2	51014736	51014936	+	613.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	105152.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-16143184-2	chr19	16143084	16143284	+	595.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_008139, intron 1 of 6)	intron (NM_008139, intron 1 of 6)	10353.0	NM_008139	14682.0	Mm.439701	NM_008139	ENSMUSG00000024639	Gnaq	1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI	guanine nucleotide binding protein, alpha q polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-17558132-1	chr6	17558032	17558232	+	663.0	f0_balb.idr	intron (NM_008591, intron 17 of 21)	intron (NM_008591, intron 17 of 21)	-78878.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	-2.18308165884198	-2.15547475440471	-2.16382331017202	-2.1706810624505	-2.18114370519566	-2.15366558754311	-2.03057248461154	-2.16945352807143	0.759018020146679	0.829933115115583	1
Merged-chr11-120640447-2	chr11	120640347	120640547	+	551.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144795, intron 6 of 7)	intron (NM_144795, intron 6 of 7)	3223.0	NM_144795	209027.0	Mm.127731	NM_144795	ENSMUSG00000025140	Pycr1	P5CR 1|P5CR1	pyrroline-5-carboxylate reductase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-28001612-2	chr4	28001512	28001712	+	793.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-811519.0	NM_001290434	13841.0	Mm.257266	NM_010141	ENSMUSG00000028289	Epha7	Cek11|Ebk|Ehk3|Hek11|Mdk1	Eph receptor A7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-11513730-2	chr2	11513630	11513830	+	861.099976	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177758, intron 1 of 14)	ID_B1|SINE|B4	-11640.0	NM_001177757	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-20834313-4	chr14	20834214	20834414	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2348.0	NM_008873	18792.0	Mm.4183	NM_008873	ENSMUSG00000021822	Plau	u-PA|uPA	plasminogen activator, urokinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-78038353-2	chr11	78038253	78038453	+	869.25	f1_balb.idr|f1_c57bl6.idr	TTS (NM_183286)	TTS (NM_183286)	412.0	NM_008028	14252.0	Mm.130227	NM_008028	ENSMUSG00000061981	Flot2	AI573412|Esa|reggie-2	flotillin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-124041697-1	chr5	124041597	124041797	+	617.0	f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-9437.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-75598173-2	chr18	75598056	75598256	+	862.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_201354, intron 6 of 11)	intron (NM_201354, intron 6 of 11)	83511.0	NR_045879	100038353.0	Mm.440724	NR_045879	ENSMUSG00000097712	Gm10532	-	predicted gene 10532	ncRNA	2.26160717536814	1.47492053846049	1.15356185202329	2.72163755567122	2.84075184035978	1.48578518454243	1.1612646804209	2.73647099251537	0.452194166065646	0.686874381047291	0.996533206832645
Merged-chr4-108789451-4	chr4	108789349	108789549	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-8361.0	NM_001347163	230597.0	Mm.196776	NM_183300	ENSMUSG00000034557	Zfyve9	Madhip|NSP|SARA|SMADIP	zinc finger, FYVE domain containing 9	protein-coding	3.14611107944525	3.34436502094496	2.24123168377407	3.60950096374946	3.83621398011998	3.92417137430699	2.92034291976258	3.48950887554508	0.659414615336793	0.277876603557857	0.781558122642907
Merged-chr18-69439529-1	chr18	69439429	69439629	+	651.5	f0_balb.idr	intron (NM_001361128, intron 3 of 19)	intron (NM_001361128, intron 3 of 19)	93369.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	0.30539582463999	1.46051105038207	0.332296357144199	0.322354761784302	0.307956414217458	1.47725340969171	0.927352641378287	0.324105824709429	0.507728689646665	0.875556379768328	0.998431161219273
Merged-chr16-22547025-2	chr16	22546925	22547125	+	889.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346673, intron 19 of 23)	intron (NM_001346673, intron 19 of 23)	-14841.0	NR_106170	102465887.0		NR_106170	ENSMUSG00000099071	Mir8095	Gm27566|mmu-mir-8095	microRNA 8095	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-7832225-5	chr10	7832129	7832329	+	757.483337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172785)	promoter-TSS (NM_172785)	-241.0	NM_172785	237256.0	Mm.140055	NM_172785	ENSMUSG00000039981	Zc3h12d	D730019B10Rik|TFL	zinc finger CCCH type containing 12D	protein-coding	2.18329102087656	2.95700989618094	1.90534121278571	2.41295916958356	2.20093061824849	2.32231030040149	2.24717518369532	2.87048911353697	0.0394914121708055	0.961594384771016	0.998431161219273
Merged-chr8-116973043-2	chr8	116972943	116973143	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357255, intron 2 of 2)	intron (NM_001357255, intron 2 of 2)	5610.0	NM_001357254	69528.0	Mm.272846	NM_027103	ENSMUSG00000031847	1700030J22Rik	-	RIKEN cDNA 1700030J22 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-35173049-2	chr7	35172959	35173159	+	726.291626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13326.0	NM_017394	53896.0	Mm.35567	NM_017394	ENSMUSG00000030495	Slc7a10	AL024237|Asc-1|D7Bwg0847e	solute carrier family 7 (cationic amino acid transporter, y+ system), member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139795091-3	chr5	139794954	139795154	+	731.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010757, intron 1 of 2)	intron (NM_010757, intron 1 of 2)	3518.0	NM_010757	17135.0	Mm.157313	NM_010757	ENSMUSG00000018143	Mafk	AW061068|NF-E2|Nfe2u	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein K (avian)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-81324089-2	chr7	81323989	81324189	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008803, exon 18 of 22)	exon (NM_008803, exon 18 of 22)	21145.0	NM_009092	20068.0	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-90819124-2	chr6	90819024	90819224	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9001.0	NM_001134384	232227.0	Mm.196943	NM_182784	ENSMUSG00000034312	Iqsec1	AW561907|BC026481|BRAG2|D6Ertd349e|cI-43	IQ motif and Sec7 domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-61921211-4	chr8	61921110	61921310	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6877.0	NM_001293783	234311.0	Mm.275233	NM_144928	ENSMUSG00000037921	Ddx60	9830118M07	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60	protein-coding	0.590252240796322	1.28345840475675	0.437665445524477	1.16911294670572	0.416428535506009	0.451268477863736	1.43317339737371	0.430483125658656	-0.605116188341347	0.73069826680934	0.998431161219273
Merged-chr3-81989830-2	chr3	81989730	81989930	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1-int|LTR|ERVL-MaLR	-7092.0	NM_021370	58170.0	Mm.88839	NM_021370	ENSMUSG00000028008	Asic5	Accn5|Blinac|Inac	acid-sensing (proton-gated) ion channel family member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-96551996-2	chr3	96551931	96552131	+	797.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5926.0	NM_023719	56338.0	Mm.410189	NM_023719	ENSMUSG00000038393	Txnip	1200008J08Rik|AA682105|Hyplip1|THIF|Tbp-2|VDUP1	thioredoxin interacting protein	protein-coding	0.387183573149977	0.539267021379737	-0.0569210513239075	0.231397537205568	0.0743366289847836	-0.0510586137378135	-0.0558672767042726	-0.0599599221453387	-2.99950099782809	0.164732242842417	1
Merged-chr10-121571707-4	chr10	121571608	121571808	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019786, intron 5 of 20)	intron (NM_019786, intron 5 of 20)	15086.0	NM_019786	56480.0	Mm.34580	NM_019786	ENSMUSG00000020115	Tbk1	1200008B05Rik|AI462036|AW048562	TANK-binding kinase 1	protein-coding	4.62228878594531	4.7736205878196	5.54214344222847	4.5949268009616	5.2158315110302	5.04164146561726	5.6524665934822	4.94903262032415	0.358290776727543	0.299981441607505	0.801360546921517
Merged-chr18-52614201-3	chr18	52614111	52614311	+	641.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1704.0	NM_025749	66758.0	Mm.251599	NM_025749	ENSMUSG00000046886	Zfp474	4933409D10Rik|Znf474	zinc finger protein 474	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97797747-3	chr6	97797647	97797847	+	938.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9311.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-139404099-4	chr5	139404048	139404248	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028469, intron 2 of 4)	intron (NM_028469, intron 2 of 4)	-2239.0	NM_177000	319772.0	Mm.440271	NM_177000	ENSMUSG00000044092	C130050O18Rik	-	RIKEN cDNA C130050O18 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-71446421-7	chr6	71446324	71446524	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5787.0	NM_024288	68477.0	Mm.28474	NM_024288	ENSMUSG00000002222	Rmnd5a	1110007A06Rik|AJ237586|AW125795|Gid2|MTA.D02.090	required for meiotic nuclear division 5 homolog A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-3620718-3	chr6	3620648	3620848	+	829.622192	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	100637.0	NR_030612	100124468.0		NR_030612	ENSMUSG00000076357	Mir653	Mirn653|mir-653|mmu-mir-653	microRNA 653	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-101779424-2	chr4	101779324	101779524	+	774.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146146, intron 13 of 18)	intron (NM_146146, intron 13 of 18)	62017.0	NM_010704	16847.0	Mm.259282	NM_010704	ENSMUSG00000057722	Lepr	LEPROT|Leprb|Modb1|OB-RGRP|Obr|db|diabetes|obese-like|obl	leptin receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-73386691-4	chr2	73386600	73386800	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001190297)	promoter-TSS (NM_001190297)	-220.0	NM_001276444	68526.0	Mm.451014	NM_001080707	ENSMUSG00000041762	Gpr155	1110017O10Rik|DEPDC3|F730029F15Rik|PGR22	G protein-coupled receptor 155	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-109056646-6	chr9	109056663	109056863	+	875.388916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_026381, exon 4 of 4)	3' UTR (NM_026381, exon 4 of 4)	1897.0	NM_026381	66940.0	Mm.196533	NM_025858	ENSMUSG00000025647	Shisa5	2310008D10Rik|6430628I05Rik|Scotin|mShisa5	shisa family member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-3543829-4	chr5	3543744	3543944	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001042501)	promoter-TSS (NM_001042501)	11.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-45266872-4	chr13	45266776	45266976	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-122866.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-70353136-5	chr16	70352979	70353179	+	852.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028803, intron 1 of 15)	(GA)n|Simple_repeat|Simple_repeat	39130.0	NM_028803	74185.0	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6264948-2	chr19	6264848	6265048	+	793.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_029830)	TTS (NR_029830)	104.0	NR_029720	387187.0		NR_029720	ENSMUSG00000065523	Mir192	Mirn192|mir-192|mmu-mir-192	microRNA 192	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-102927308-1	chr7	102927208	102927408	+	618.0	f0_balb.idr	promoter-TSS (NM_147089)	promoter-TSS (NM_147089)	-322.0	NM_147089	259093.0	Mm.377837	NM_147089	ENSMUSG00000073963	Olfr572	MOR10-2	olfactory receptor 572	protein-coding	1.40377803545856	0.7869008097113	1.30142369563303	0.762980448363813	1.41732307108778	1.82535586296768	1.3128821205564	0.764823484840527	1.1183154289424	0.436876566228005	0.908362185228875
Merged-chr15-84979787-2	chr15	84979687	84979887	+	565.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033273, intron 1 of 9)	intron (NM_001033273, intron 1 of 9)	8184.0	NM_001033273	223739.0	Mm.323925	NM_001033273	ENSMUSG00000036046	5031439G07Rik	AW554572|mKIAA0930	RIKEN cDNA 5031439G07 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-25486250-2	chr15	25486150	25486350	+	598.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	72058.0	NR_027376	432939.0	Mm.146555	NM_001013791		Gm5468	100040583|EG432939	predicted gene 5468	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-23971095-1	chr17	23970995	23971195	+	1000.0	f1_balb.idr	Intergenic	Intergenic	4135.0	NM_013921	30943.0	Mm.142568	NM_013921	ENSMUSG00000024124	Prss30	2010015P21Rik|Disp|Disp1|Tmprss8	protease, serine 30	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-102819763-2	chr2	102819606	102819806	+	653.666687	f0_c57.idr|f1_c57bl6.idr	intron (NM_001039150, intron 13 of 13)	intron (NM_001039150, intron 13 of 13)	-72946.0	NR_153853	102637542.0	Mm.371582	NR_153852		Gm13872	-	predicted gene 13872	ncRNA	2.07872771128985	2.19417781979798	1.35325553616287	2.80719775942264	2.62020718334448	2.05377919836252	2.13775585230582	2.3139661671846	0.186846981049121	0.839654933392319	0.998431161219273
Merged-chr3-130901071-2	chr3	130900971	130901171	+	555.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-170673.0	NM_001005859	68436.0	Mm.140568	NM_026724	ENSMUSG00000062006	Rpl34	1100001I22Rik	ribosomal protein L34	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-9083060-2	chr16	9082960	9083160	+	821.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	252960.0	NM_001081400	69053.0	Mm.390868	NM_001081400	ENSMUSG00000022507	1810013L24Rik	1110017P05Rik|3010002C02Rik|AA792997|AW124177|Gm19906|R74903	RIKEN cDNA 1810013L24 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-24725857-3	chr8	24725742	24725942	+	900.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009619)	promoter-TSS (NM_009619)	10.0	NM_009619	11497.0	Mm.5168	NM_009619	ENSMUSG00000031553	Adam3	Cyrn1|Taz83|tMDC	a disintegrin and metallopeptidase domain 3 (cyritestin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-93090433-4	chr10	93090343	93090543	+	953.395874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8847.0	NM_001347060	380654.0	Mm.34980	NM_001347060	ENSMUSG00000020014	Cfap54	4930485B16Rik|Gm872	cilia and flagella associated protein 54	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-59265329-4	chr10	59265240	59265440	+	915.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43418.0	NM_172939	268301.0	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-64374874-4	chr1	64374783	64374983	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-157921.0	NM_009952	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-135440790-3	chr3	135440695	135440895	+	829.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356598, intron 2 of 8)	intron (NM_001356598, intron 2 of 8)	1669.0	NM_001356597	66105.0	Mm.49884	NM_025356	ENSMUSG00000078578	Ube2d3	1100001F19Rik|9430029A22Rik|AA414951	ubiquitin-conjugating enzyme E2D 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-22314953-4	chr17	22314832	22315032	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357991)	promoter-TSS (NM_001357991)	-90.0	NM_001357991	631624.0	Mm.440794	NM_001357991		Gm7072	EG631624	predicted gene 7072	protein-coding	4.72264399585848	4.67052653592418	3.31371972571334	4.22847499517074	3.05841500645979	3.94030418397507	3.34170983810378	4.39090471069902	-0.755337115908472	0.146233620490039	0.596296396331935
Merged-chr13-96455529-3	chr13	96455429	96455629	+	893.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042714, intron 2 of 13)	intron (NM_001042714, intron 2 of 13)	15631.0	NM_001042714	271144.0	Mm.470057	NM_001042714	ENSMUSG00000047117	Ankdd1b	9330128J19Rik	ankyrin repeat and death domain containing 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-13673864-2	chr8	13673764	13673964	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 1 of 23)	intron (NM_009025, intron 1 of 23)	3723.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-27481112-2	chr7	27481012	27481212	+	881.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-5841.0	NM_018820	55942.0	Mm.153684	NM_018820	ENSMUSG00000008384	Sertad1	1110032C13Rik|AV000455|AW456625|Sei-1|Sei1|TRIP-Br1	SERTA domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-73842622-2	chr12	73842522	73842722	+	550.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58702.0	NM_001313920	15251.0	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132808285-4	chr4	132808204	132808404	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11940.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-24142960-4	chr10	24142876	24143076	+	938.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6313.0	NM_001358563	53331.0	Mm.248042	NM_016797	ENSMUSG00000019998	Stx7	AI315064|AI317144|AW107239|Syn7	syntaxin 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-8995001-5	chr15	8994842	8995042	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198024, intron 1 of 13)	intron (NM_198024, intron 1 of 13)	26993.0	NM_198024	223332.0	Mm.321371	NM_198024	ENSMUSG00000048424	Ranbp3l	C130037N17Rik	RAN binding protein 3-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-70437222-2	chr18	70437089	70437289	+	857.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35265.0	NM_029019	170461.0	Mm.83623	NM_029019	ENSMUSG00000079608	Stard6	1700011K09Rik|4833424I06Rik|4933429L05Rik|AI644424	StAR-related lipid transfer (START) domain containing 6	protein-coding	2.94398567768685	2.77720993126872	1.21958579524934	2.22451757983533	2.00934923000055	1.77035951648907	1.22706120642938	2.23672790182758	-1.35255413309926	0.189328504844841	0.667555616405381
Merged-chr13-113580079-4	chr13	113579982	113580182	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38482.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-147125070-4	chr4	147124971	147125171	+	995.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-50795.0	NM_001039209	195531.0	Mm.270762	NM_001039209	ENSMUSG00000078496	Zfp982	Gm13152	zinc finger protein 982	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-121529929-2	chr3	121529829	121530029	+	593.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145394, intron 2 of 14)	intron (NM_145394, intron 2 of 14)	2415.0	NM_145394	213603.0	Mm.33062	NM_145394	ENSMUSG00000039865	Slc44a3	BC010552	solute carrier family 44, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-54131890-3	chr10	54131794	54131994	+	875.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55972.0	NR_038016	100502920.0	Mm.403982	NR_038016	ENSMUSG00000097069	Gm16998	-	predicted gene, 16998	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84914103-2	chr8	84914003	84914203	+	839.666626	f1_balb.idr|f1_c57bl6.idr	intron (NR_103491, intron 1 of 2)	B3|SINE|B2	768.0	NR_103491	100503676.0	Mm.437155	NR_103491	ENSMUSG00000003812	Gm38426	-	predicted gene, 38426	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-7087273-2	chr1	7087173	7087373	+	711.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1647.0	NM_183028	319263.0	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-14642639-4	chr8	14642541	14642741	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172910, intron 4 of 15)	intron (NM_172910, intron 4 of 15)	-245895.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	4.16557020234568	3.10754926734221	3.42986690969587	3.71568069168293	3.42444503517824	3.82716213528167	3.77776673839411	3.43725401469747	-0.0797796193678253	0.879060539182732	0.998431161219273
Merged-chr2-18027593-4	chr2	18027482	18027682	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_028376, exon 2 of 2)	non-coding (NR_028376, exon 2 of 2)	333.0	NR_028378	100034739.0	Mm.401643	NR_028378		Gm17762	-	predicted gene, 17762	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-123430001-4	chr7	123429898	123430098	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355050, intron 6 of 6)	intron (NM_001355050, intron 6 of 6)	22181.0	NM_001355050	30949.0	Mm.260527	NM_025304	ENSMUSG00000030763	Lcmt1	AL033290|LCMT-1|Lcmt	leucine carboxyl methyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-66008066-2	chr5	66007966	66008166	+	600.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3781.0	NR_027961	231253.0	Mm.436542	NM_177679	ENSMUSG00000054598	9130230L23Rik	-	RIKEN cDNA 9130230L23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122699629-2	chr5	122699529	122699729	+	766.099976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7915.0	NM_001310720	18438.0	Mm.290884	NM_011026	ENSMUSG00000029470	P2rx4	AI504491|AW555605|D5Ertd444e|P2X4	purinergic receptor P2X, ligand-gated ion channel 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16075007-2	chr7	16074907	16075107	+	951.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001099277, intron 1 of 15)	B3A|SINE|B2	3162.0	NM_001099277	666528.0	Mm.290718	NM_001099277	ENSMUSG00000078796	Zfp541	EG666528|Znf541	zinc finger protein 541	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-3331272-2	chr11	3331172	3331372	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178149, intron 1 of 5)	intron (NM_178149, intron 1 of 5)	541.0	NM_178149	216505.0	Mm.390323	NM_178149	ENSMUSG00000034614	Pik3ip1	1500004A08Rik|5830455E04Rik|Crkd|Hgfl	phosphoinositide-3-kinase interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27753494-3	chr2	27753455	27753655	+	693.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290481, intron 6 of 9)	intron (NM_001290481, intron 6 of 9)	42972.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-61339548-2	chr10	61339448	61339648	+	579.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013753, intron 17 of 19)	intron (NM_013753, intron 17 of 19)	41712.0	NM_011073	18646.0	Mm.240313	NM_011073	ENSMUSG00000037202	Prf1	Pfn|Pfp|Prf-1	perforin 1 (pore forming protein)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-134765249-4	chr4	134765142	134765342	+	972.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145554, intron 1 of 8)	B1_Mus2|SINE|Alu	2762.0	NM_145554	100017.0	Mm.27486	NM_145554	ENSMUSG00000037295	Ldlrap1	AA691260|ARH2|Arh|Arh1|FHCB1|FHCB2	low density lipoprotein receptor adaptor protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-7870798-3	chr18	7870721	7870921	+	813.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360956, intron 2 of 13)	PB1D7|SINE|Alu	1108.0	NM_001360956	225131.0	Mm.204524	NM_153085	ENSMUSG00000024283	Wac	1110067P07Rik|A230035H12Rik|AI256735|AI256776|Wwp4	WW domain containing adaptor with coiled-coil	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-13666347-4	chr13	13666223	13666423	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010748, intron 18 of 52)	intron (NM_010748, intron 18 of 52)	75914.0	NM_010748	17101.0	Mm.342337	NM_010748	ENSMUSG00000019726	Lyst	D13Sfk13|beige|bg	lysosomal trafficking regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-76367802-1	chr12	76367702	76367902	+	592.0	f0_balb.idr	intron (NM_028356, intron 1 of 2)	intron (NM_028356, intron 1 of 2)	1662.0	NM_001172104	109929.0	Mm.41880	NM_028356	ENSMUSG00000056459	Zbtb25	2810462M08Rik|2900064P18Rik|AI842128|Kup|Zfp-50|Zfp50	zinc finger and BTB domain containing 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-93279294-2	chr10	93279195	93279395	+	648.166626	f0_balb.idr|f1_balb.idr	intron (NM_001322265, intron 2 of 4)	intron (NM_001322265, intron 2 of 4)	31864.0	NM_001322268	13713.0	Mm.4454	NM_013508	ENSMUSG00000008398	Elk3	D430049E23Rik|Erp|Etrp|Net|Sap-2	ELK3, member of ETS oncogene family	protein-coding	3.45936588099157	3.7266607173551	2.00187866967649	2.94610467361633	4.13051321441208	3.39806342402083	3.17729357422221	4.27743498327503	0.982867231884835	0.114401654214096	0.530504140914995
Merged-chr13-48544752-2	chr13	48544652	48544852	+	611.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6480.0	NR_029725	387244.0		NR_029725	ENSMUSG00000065421	Mirlet7a-1	Let-7a|Mirnlet7a|Mirnlet7a-1|let-7a-1	microRNA let7a-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3324138-4	chr19	3324031	3324231	+	978.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013495, intron 1 of 18)	CpG	830.0	NM_013495	12894.0	Mm.18522	NM_013495	ENSMUSG00000024900	Cpt1a	C730027G07|CPTI|Cpt1	carnitine palmitoyltransferase 1a, liver	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-91083538-1	chr10	91083438	91083638	+	1000.0	f0_balb.idr	promoter-TSS (NM_009684)	promoter-TSS (NM_009684)	499.0	NM_026166	67454.0	Mm.252843	NM_026166	ENSMUSG00000019975	Ikbip	1200009F10Rik|1700023M03Rik|D18354|Ikip	IKBKB interacting protein	protein-coding	3.91854328411122	1.67937875964151	3.42511251870077	3.54373693888513	3.98826750556031	1.99640207989677	3.45202452735676	2.97954012470809	-0.108415945867179	0.886781173525716	0.998431161219273
Merged-chr8-83922888-1	chr8	83922788	83922988	+	544.0	f1_c57bl6.idr	intron (NM_181039, intron 3 of 22)	intron (NM_181039, intron 3 of 22)	22790.0	NM_181039	330814.0	Mm.260733	NM_181039	ENSMUSG00000013033	Adgrl1	2900070I05Rik|AI182398|CLIBA|Lec2|Lphn1|mKIAA0821	adhesion G protein-coupled receptor L1	protein-coding	-2.05752322593321	-2.15521190974092	-2.16307242109104	-2.16952927915413	-2.17938029103484	-2.15350850414045	-2.16129297361887	-2.16837350464794	-0.683654500252594	0.846597994014493	1
Merged-chr8-86585296-1	chr8	86585196	86585396	+	585.0	f0_c57.idr	Intergenic	Intergenic	-18706.0	NM_172912	244562.0	Mm.67485	NM_172912	ENSMUSG00000036872	Abcc12	4930467B22Rik|MRP9	ATP-binding cassette, sub-family C (CFTR/MRP), member 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-132417454-4	chr1	132417357	132417557	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172516)	promoter-TSS (NM_172516)	4.0	NM_172516	213452.0	Mm.257120	NM_172516	ENSMUSG00000042046	Dstyk	A930019K20Rik|C430014H23Rik|C820013G01|Ripk5	dual serine/threonine and tyrosine protein kinase	protein-coding	3.59049157941646	3.38663210259856	4.04145297109539	3.43758847385428	2.83747775745182	3.06830448814294	3.19636221578409	3.84890878509665	-0.531762720499054	0.345201086060343	0.845824907532742
Merged-chr7-45464289-2	chr7	45464189	45464389	+	888.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_007527, intron 4 of 5)	intron (NM_007527, intron 4 of 5)	2609.0	NM_007527	12028.0	Mm.19904	NM_007527	ENSMUSG00000003873	Bax	-	BCL2-associated X protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-103217871-4	chr11	103217753	103217953	+	976.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177801, intron 1 of 4)	(CACCG)n|Simple_repeat|Simple_repeat	579.0	NM_177801	328019.0	Mm.189646	NM_177801	ENSMUSG00000044787	Spata32	4933400C05Rik|VAD1.2	spermatogenesis associated 32	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-43795684-4	chr13	43795610	43795810	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009856, intron 2 of 4)	intron (NM_009856, intron 2 of 4)	10598.0	NM_001289915	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-144977285-1	chr4	144977185	144977385	+	552.0	f0_balb.idr	intron (NM_001276465, intron 68 of 69)	intron (NM_001276465, intron 68 of 69)	84148.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80347967-1	chr7	80347867	80348067	+	1000.0	f1_c57bl6.idr	Intergenic	Intergenic	4830.0	NM_026812	68695.0	Mm.21171	NM_026812	ENSMUSG00000030532	Hddc3	1110033O09Rik|C86475|MESH1	HD domain containing 3	protein-coding	-2.18233058068552	-2.15536956715525	-2.16352280018114	-2.04193253143548	-2.18043796738662	-2.15360272754651	-2.16167708693786	-2.16902129354933	-0.683654500252594	0.846597994014493	1
Merged-chr7-67222539-4	chr7	67222440	67222640	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175215)	promoter-TSS (NM_175215)	-4.0	NR_131043	76628.0	Mm.384589	NR_131043	ENSMUSG00000097527	1700112J16Rik	-	RIKEN cDNA 1700112J16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-110651263-1	chr5	110651163	110651363	+	543.0	f1_balb.idr	intron (NM_153570, intron 5 of 14)	intron (NM_153570, intron 5 of 14)	2119.0	NM_153570	100608.0	Mm.29960	NM_153570	ENSMUSG00000033294	Noc4l	AI326906	NOC4 like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16229966-4	chr7	16229899	16230099	+	888.36908	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7967.0	NM_027883	71723.0	Mm.75259	NM_027883	ENSMUSG00000006019	Dhx34	1200013B07Rik|1810012L18Rik|Ddx34|mKIAA0134	DEAH (Asp-Glu-Ala-His) box polypeptide 34	protein-coding	3.10676259100012	3.31117925623204	1.91012902122053	3.11082384929719	2.57880032564624	3.58051233860428	2.80474961079204	3.67324579871343	0.475172479236698	0.493444868814965	0.935679785535167
Merged-chr7-66689127-2	chr7	66689027	66689227	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001191001)	promoter-TSS (NM_001191001)	434.0	NM_080443	117589.0	Mm.34785	NM_080443	ENSMUSG00000030509	Asb7	AI449039|Asb-7|D030055C23Rik	ankyrin repeat and SOCS box-containing 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123828714-2	chr5	123828614	123828814	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	36802.0	NM_030701	80885.0	Mm.440567	NM_030701	ENSMUSG00000045502	Hcar2	Gpr109a|Gpr109b|HM74|Niacr1|PUMA-G|Pumag|mHM74b	hydroxycarboxylic acid receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-39909059-1	chr10	39908959	39909159	+	734.5	f0_balb.idr	Intergenic	Intergenic	-9821.0	NR_033628	213332.0	Mm.484359	NR_033628		Mfsd4b4	AA474331	major facilitator superfamily domain containing 4B4	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141639612-2	chr7	141639512	141639712	+	801.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001330001, intron 31 of 33)	intron (NM_001330001, intron 31 of 33)	15707.0	NM_001330001	353328.0	Mm.246621	NM_181729	ENSMUSG00000048191	Muc6	-	mucin 6, gastric	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5912216-4	chr19	5912186	5912386	+	837.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011262, intron 1 of 10)	CpG	585.0	NM_011262	19708.0	Mm.2651	NM_011262	ENSMUSG00000024826	Dpf2	2210010M07Rik|BAF45D|Req|ubi-d4	D4, zinc and double PHD fingers family 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-85275502-1	chr1	85275402	85275602	+	654.0	f1_balb.idr	Intergenic	Intergenic	-4936.0	NM_001037909	620078.0	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik	RIKEN cDNA C130026I21 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-124177932-2	chr10	124177832	124178032	+	631.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-291142.0	NR_028310	75030.0	Mm.159403	NR_028310	ENSMUSG00000112364	4930503E24Rik	-	eukaryotic translation initiation factor 3, subunit I pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3719605-4	chr19	3719562	3719762	+	983.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11251.0	NM_001358257	72056.0	Mm.23780	NM_028077	ENSMUSG00000035372	1810055G02Rik	AI256204	RIKEN cDNA 1810055G02 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-114834626-2	chr6	114834526	114834726	+	662.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253718, intron 19 of 19)	MIRb|SINE|MIR	87195.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122548042-4	chr8	122547979	122548179	+	996.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037298, intron 1 of 50)	intron (NM_001037298, intron 1 of 50)	3250.0	NM_001037298	234839.0	Mm.37324	NM_001037298	ENSMUSG00000014444	Piezo1	9630020g22|Fam38a|mKIAA0233	piezo-type mechanosensitive ion channel component 1	protein-coding	3.75208952709023	2.65205058180506	4.28537564457522	4.43883309595375	2.74696900420039	2.8382522638505	3.32556674401823	1.86222426490657	-1.78051313489611	0.00672839964619488	0.0827689736381198
Merged-chr8-40073002-1	chr8	40072902	40073102	+	630.0	f1_balb.idr	Intergenic	L1Md_F2|LINE|L1	213951.0	NM_030610	80857.0	Mm.425526	NM_030610	ENSMUSG00000031603	Fgf20	-	fibroblast growth factor 20	protein-coding	-1.8418762459921	-1.8125357239735	-1.82140854000656	-1.82869693527674	-1.56059678980999	-1.8106129477253	-1.81939992894326	-1.82739231600805	1.3620893379502	0.699511506488145	1
Merged-chr10-79927423-4	chr10	79927402	79927602	+	933.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001288625, intron 1 of 8)	CpG	161.0	NM_001288625	13496.0	Mm.301282	NM_007880	ENSMUSG00000019564	Arid3a	Bright|Dri1|Dril1	AT rich interactive domain 3A (BRIGHT-like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-82774517-3	chr18	82774433	82774633	+	828.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15494.0	NR_045389	76961.0	Mm.396392	NR_045389	ENSMUSG00000101773	2210420H20Rik	-	RIKEN cDNA 2210420H20 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-79797236-4	chr12	79797129	79797329	+	783.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 9 of 10)	intron (NM_009014, intron 9 of 10)	127504.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-73611009-4	chr12	73610893	73611093	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001313977, intron 2 of 14)	intron (NM_001313977, intron 2 of 14)	26197.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-79654435-2	chr5	79654335	79654535	+	549.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	-1366136.0	NM_001347367	319387.0	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-132308514-3	chr7	132308416	132308616	+	724.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029935, intron 1 of 7)	URR1A|DNA|hAT-Charlie	-7148.0	NR_028578	100043682.0	Mm.482794	NR_028578	ENSMUSG00000109270	Gm10584	-	predicted gene 10584	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-8446062-4	chr15	8445965	8446165	+	876.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1602.0	NM_201232	71175.0	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	NIPBL cohesin loading factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-105664563-2	chr1	105664479	105664679	+	820.0	f0_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013784)	promoter-TSS (NM_013784)	718.0	NM_029349	227446.0	Mm.337339	NM_029349	ENSMUSG00000026319	2310035C23Rik	6430401N10|Kiaa1468|Relch|mKIAA1468	RIKEN cDNA 2310035C23 gene	protein-coding	1.15858472862775	2.97131979782503	1.28844719133432	1.01712868821642	0.704306273248649	1.11054097817339	0.770118329436138	2.34396455210649	-1.11050780748083	0.390410947060148	0.879597623215007
Merged-chr18-35929774-2	chr18	35929624	35929824	+	628.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35106.0	NM_001289602	74002.0	Mm.196944	NM_028707	ENSMUSG00000024347	Psd2	6330404E20Rik|AW125584|EFA6C	pleckstrin and Sec7 domain containing 2	protein-coding	0.212214785236705	0.126339211253441	-0.180238473756115	-0.182724498102832	-0.1861967916558	-0.176240788223664	-0.179523396714737	0.273628164663579	-0.510852541802112	0.833868296515052	1
Merged-chr10-121689774-3	chr10	121689665	121689865	+	904.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177335, intron 11 of 12)	intron (NM_177335, intron 11 of 12)	48064.0	NM_177335	216393.0	Mm.119759	NM_177335	ENSMUSG00000047642	D930020B18Rik	1500017I17Rik	RIKEN cDNA D930020B18 gene	protein-coding	0.855197357386659	0.590917578728831	1.19718483643172	0.754326116411014	1.09040519755935	0.593177426868798	1.50776860205863	0.757965067087912	0.807144546163889	0.593852384564344	0.9706660979479
Merged-chr12-85688070-3	chr12	85687972	85688172	+	745.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016767, intron 1 of 2)	intron (NM_016767, intron 1 of 2)	1352.0	NM_016767	53314.0	Mm.6672	NM_016767	ENSMUSG00000034266	Batf	B-ATF|SFA-2	basic leucine zipper transcription factor, ATF-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-9631826-4	chr4	9631718	9631918	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177856, intron 4 of 4)	intron (NM_001177856, intron 4 of 4)	11899.0	NM_001177853	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-63214370-4	chr4	63214223	63214423	+	721.424988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1089.0	NM_025685	373864.0	Mm.194116	NM_025685	ENSMUSG00000045672	Col27a1	5730512J02Rik|AI449266	collagen, type XXVII, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127608008-2	chr10	127607908	127608108	+	586.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_008512, exon 4 of 89)	exon (NM_008512, exon 4 of 89)	13140.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-123043490-4	chr8	123043402	123043602	+	961.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045268, exon 1 of 1)	non-coding (NR_045268, exon 1 of 1)	927.0	NR_045268	100503178.0	Mm.294938	NR_045268	ENSMUSG00000099881	2810013P06Rik	-	RIKEN cDNA 2810013P06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-98914415-4	chr10	98914288	98914488	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026482)	promoter-TSS (NM_026482)	-254.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-8998968-1	chr3	8998868	8999068	+	553.0	f1_balb.idr	intron (NM_009412, intron 1 of 5)	B1_Mur4|SINE|Alu	5236.0	NM_001357073	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	0.813837938285102	0.939325454213015	0.523299237985426	0.867748884033365	1.66885726698486	1.10486605817613	0.525739065689788	0.51620931713488	1.2145339334528	0.448015511357282	0.914814758844887
Merged-chr3-63963892-3	chr3	63963790	63963990	+	891.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_015728, exon 1 of 6)	exon (NM_015728, exon 1 of 6)	843.0	NM_001272035	11416.0	Mm.135619	NM_015728	ENSMUSG00000027822	Slc33a1	AI315656|AI788741|Acatn|D630022N01Rik	solute carrier family 33 (acetyl-CoA transporter), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-45851944-4	chr11	45851883	45852083	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346760)	promoter-TSS (NM_001346760)	19.0	NM_001045520	216705.0	Mm.169673	NM_001045520	ENSMUSG00000006169	Clint1	AI642036|AW537616|C530049I24Rik|Enth|Epn4|F630206G17Rik|mKIAA0171	clathrin interactor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-63167388-2	chr17	63167288	63167488	+	569.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_015794, intron 7 of 8)	IMPB_01|Satellite|Satellite	145585.0	NR_130176	414079.0	Mm.444282	NR_130176	ENSMUSG00000090565	4930405O22Rik	-	RIKEN cDNA 4930405O22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-37605879-4	chr1	37605774	37605974	+	980.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-64858.0	NM_173870	269181.0	Mm.25861	NM_173870	ENSMUSG00000026110	Mgat4a	9530018I07Rik|GnT-IVa|glcNAc-T-IVa	mannoside acetylglucosaminyltransferase 4, isoenzyme A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-68128099-2	chr7	68127999	68128199	+	824.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010513, intron 2 of 20)	intron (NM_010513, intron 2 of 20)	136134.0	NM_030101	78444.0	Mm.425468	NM_030101	ENSMUSG00000030553	Pgpep1l	C330024D12Rik	pyroglutamyl-peptidase I-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191316866-2	chr1	191316766	191316966	+	669.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_025424, intron 1 of 3)	intron (NM_025424, intron 1 of 3)	1252.0	NM_025424	66208.0	Mm.46444	NM_025424	ENSMUSG00000037499	Nenf	1110060M21Rik|SCIRP10|Spuf	neuron derived neurotrophic factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-10693174-4	chr19	10693072	10693272	+	926.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361958, intron 1 of 4)	L1MB3|LINE|L1	4437.0	NM_001361959	107305.0	Mm.19091	NM_181403	ENSMUSG00000048832	Vps37c	5730409F24Rik|AU042646	vacuolar protein sorting 37C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-107114211-3	chr13	107114150	107114350	+	899.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	91680.0	NR_015471	100040322.0	Mm.133867	NR_015471	ENSMUSG00000071181	3830408C21Rik	-	RIKEN cDNA 3830408C21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-71544530-2	chr2	71544430	71544630	+	634.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_010054, exon 3 of 3)	exon (NM_010054, exon 3 of 3)	2224.0	NM_010054	13392.0	Mm.3896	NM_010054	ENSMUSG00000023391	Dlx2	AW121999|Dlx-2|Tes-1	distal-less homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-172349843-1	chr1	172349743	172349943	+	1000.0	f1_c57bl6.idr	intron (NM_001039484, intron 1 of 1)	intron (NM_001039484, intron 1 of 1)	8633.0	NM_001039484	16513.0	Mm.254563	NM_020269	ENSMUSG00000044708	Kcnj10	BIR10|BIRK-1|Kir1.2|Kir4.1	potassium inwardly-rectifying channel, subfamily J, member 10	protein-coding	0.681960214203869	0.838158020565051	0.22847734337621	0.749106306340275	0.485421918728495	0.236029556480898	0.229836270674615	0.224554946933712	-2.62983440604208	0.188716826015371	1
Merged-chr18-65681900-2	chr18	65681820	65682020	+	654.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361052, intron 6 of 8)	intron (NM_001361052, intron 6 of 8)	-16348.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	1.32165191681152	1.53475066590959	0.612760371282847	0.603876403235166	1.41805886258903	0.626697288752649	0.615284238723074	1.09808176406869	-0.427913185370426	0.795656439785978	0.998431161219273
Merged-chr7-4483665-2	chr7	4483565	4483765	+	605.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_029834, exon 13 of 22)	exon (NM_029834, exon 13 of 22)	-12781.0	NR_028416	320749.0	Mm.396688	NR_028416		D630041G03Rik	-	RIKEN cDNA D630041G03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-143039916-2	chr7	143039822	143040022	+	739.666687	f1_balb.idr|f1_c57bl6.idr	intron (NR_110355, intron 2 of 4)	MLT2B3|LTR|ERVL	-12828.0	NM_133655	12520.0	Mm.806	NM_133655	ENSMUSG00000037706	Cd81	Tapa-1|Tapa1|Tspan28	CD81 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-90977460-4	chr5	90977369	90977569	+	857.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026788, intron 6 of 7)	intron (NM_026788, intron 6 of 7)	46273.0	NM_026788	665563.0	Mm.153030	NM_026788	ENSMUSG00000029376	Mthfd2l	1110019K23Rik|C630010D07Rik	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-98842406-2	chr15	98842306	98842506	+	573.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033276, intron 43 of 54)	intron (NM_001033276, intron 43 of 54)	-10898.0	NM_016781	19082.0	Mm.6670	NM_016781	ENSMUSG00000067713	Prkag1	AA571379|BB036179|Prkaac	protein kinase, AMP-activated, gamma 1 non-catalytic subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-132285016-4	chr2	132284825	132285025	+	853.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291040, intron 1 of 3)	intron (NM_001291040, intron 1 of 3)	-1014.0	NM_001291039	110911.0	Mm.284503	NM_138651	ENSMUSG00000058793	Cds2	5730450N06Rik|5730460C18Rik|AI854580|D2Wsu127e	CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-55459548-2	chr11	55459448	55459648	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009720, intron 1 of 3)	intron (NM_009720, intron 1 of 3)	1660.0	NM_009720	11927.0	Mm.217759	NM_009720	ENSMUSG00000018585	Atox1	AI256639|Atx1	antioxidant 1 copper chaperone	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89385244-3	chr3	89385142	89385342	+	862.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009565, intron 1 of 2)	intron (NM_009565, intron 1 of 2)	2429.0	NM_001355212	22724.0	Mm.262184	NM_009565	ENSMUSG00000028042	Zbtb7b	Thpok|Zfp67|c-Krox	zinc finger and BTB domain containing 7B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-157448738-2	chr1	157448692	157448892	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9776.0	NM_001356418	226527.0	Mm.215960	NM_001033284	ENSMUSG00000033488	Cryzl2	-	crystallin zeta like 2	protein-coding	1.96679505076076	2.49843255366579	1.29553390416631	1.87318204985318	2.07109624444933	1.73406804027487	1.05945254072095	1.03871425496698	-1.15958609102213	0.321778582892425	0.823903365381149
Merged-chr2-32607425-4	chr2	32607327	32607527	+	837.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025310, intron 1 of 5)	intron (NM_001025310, intron 1 of 5)	442.0	NR_110347	50935.0	Mm.88831	NM_016973	ENSMUSG00000026811	St6galnac6	ST6GalNAcVI|Siat7f	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16248899-1	chr7	16248799	16248999	+	1000.0	f1_balb.idr	exon (NM_007577, exon 3 of 3)	exon (NM_007577, exon 3 of 3)	-4745.0	NM_176912	319430.0	Mm.239570	NM_176912	ENSMUSG00000074361	C5ar2	C5L2|E030029A11Rik|Gpr77	complement component 5a receptor 2	protein-coding	0.578754750782425	0.320577686625302	0.313011816614882	0.307146417213588	0.896946481495839	0.322277732120284	1.11935373651376	0.759149798115059	2.8730197922591	0.134050710675683	1
Merged-chr9-119093589-4	chr9	119093472	119093672	+	956.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_121571)	promoter-TSS (NR_121571)	-70.0	NM_019676	18799.0	Mm.23963	NM_019676	ENSMUSG00000010660	Plcd1	AW212592|C79986	phospholipase C, delta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-54863295-1	chr12	54863195	54863395	+	593.0	f1_balb.idr	promoter-TSS (NM_007688)	promoter-TSS (NM_007688)	-418.0	NM_007688	12632.0	Mm.276826	NM_007688	ENSMUSG00000062929	Cfl2	-	cofilin 2, muscle	protein-coding	-1.20406370813143	-1.56956373024278	-1.57884638916872	-1.58647144159385	-1.598104728449	-1.56755213932999	-1.57674499865798	-1.58510656085539	-1.70745470802464	0.626337835847419	1
Merged-chr7-45450020-3	chr7	45449893	45450093	+	854.2666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030678, intron 12 of 15)	ID_B1|SINE|B4	9893.0	NM_010240	14325.0	Mm.30357	NM_010240	ENSMUSG00000050708	Ftl1	Ftl|Ftl-1|L-ferritin	ferritin light polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-87376335-4	chr3	87376243	87376443	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310545)	promoter-TSS (NM_001310545)	-44.0	NM_001310545	229499.0	Mm.255203	NM_153090	ENSMUSG00000059994	Fcrl1	A230020G22Rik|Bxmas1|Bxmh1|Bxmh1b|Fcrh1|Fcrh1l|Fcrh1s|Ifgp1	Fc receptor-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-94913684-2	chr8	94913584	94913784	+	588.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001033533, exon 2 of 9)	5' UTR (NM_001033533, exon 2 of 9)	4414.0	NM_001033533	234582.0	Mm.277871	NM_001033533	ENSMUSG00000063605	Ccdc102a	BC027663|Gm586	coiled-coil domain containing 102A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-49961543-2	chr11	49961443	49961643	+	997.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_029004, intron 6 of 13)	intron (NM_029004, intron 6 of 13)	59382.0	NM_001347462	74563.0	Mm.258798	NM_029004	ENSMUSG00000020374	Rasgef1c	9130006A14Rik	RasGEF domain family, member 1C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-111058729-1	chr5	111058629	111058829	+	658.0	f1_balb.idr	intron (NM_001267622, intron 2 of 22)	intron (NM_001267622, intron 2 of 22)	54585.0	NR_030482	735278.0		NR_030482	ENSMUSG00000076163	Mir701	Mirn701|mir-701|mmu-mir-701	microRNA 701	ncRNA	1.07675673354819	0.578244679353733	1.57784876122974	0.559504255592527	1.08826617253743	0.799641079201292	0.570049674736614	1.04161357106749	-0.629615071561884	0.692685423289991	0.99740158133691
Merged-chr14-44078012-4	chr14	44077893	44078093	+	777.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-24661.0	NM_007895	13587.0	Mm.327386	NM_007895	ENSMUSG00000072596	Ear2	EAR-13|EAR-2|ECP|ECP 2|Raf3|Rnase2	eosinophil-associated, ribonuclease A family, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-93969487-2	chr10	93969387	93969587	+	741.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001304572, exon 12 of 12)	3' UTR (NM_001304572, exon 12 of 12)	-5624.0	NR_029764	723908.0		NR_029764	ENSMUSG00000065607	Mir331	Mirn331|mmu-mir-331	microRNA 331	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-120594545-2	chr5	120594445	120594645	+	791.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029408, intron 1 of 4)	RSINE1|SINE|B4	5522.0	NM_029408	75732.0	Mm.425285	NM_029408	ENSMUSG00000029601	Iqcd	4933433C09Rik|AI662646	IQ motif containing D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-118459112-4	chr1	118459017	118459217	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_027901, exon 1 of 1)	non-coding (NR_027901, exon 1 of 1)	148.0	NR_027901	68204.0	Mm.443536	NR_027901	ENSMUSG00000107722	2900060B14Rik	-	RIKEN cDNA 2900060B14 gene	ncRNA	5.21785737832819	5.21783236632462	4.5647721058597	4.71428079288757	4.60417844723712	5.66763871279051	3.78929214607923	3.83400820586931	-0.318216944032701	0.477659885271692	0.927980290875356
Merged-chr12-80213467-4	chr12	80213373	80213573	+	908.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134156, intron 1 of 20)	MIR3|SINE|MIR	46898.0	NM_134156	109711.0	Mm.253564	NM_134156	ENSMUSG00000015143	Actn1	3110023F10Rik|Actn1a	actinin, alpha 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-148959235-2	chr5	148959135	148959335	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8985.0	NR_040686	71473.0	Mm.90306	NR_040686	ENSMUSG00000079069	8430423G03Rik	-	RIKEN cDNA 8430423G03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-36039598-2	chr3	36039498	36039698	+	556.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178418, intron 3 of 11)	ORR1B1-int|LTR|ERVL-MaLR	13949.0	NM_178418	241943.0	Mm.269018	NM_178418	ENSMUSG00000047696	Ccdc144b	-	coiled-coil domain containing 144B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-86849018-1	chr6	86848918	86849118	+	1000.0	f0_c57.idr	promoter-TSS (NM_177762)	promoter-TSS (NM_177762)	422.0	NR_028298	67170.0	Mm.119489	NR_028298	ENSMUSG00000100164	2610306M01Rik	-	RIKEN cDNA 2610306M01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76378435-2	chr15	76378335	76378535	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-2078.0	NM_175457	223658.0	Mm.123240	NM_175457	ENSMUSG00000022558	Mroh1	D330001F17Rik|Heatr7a	maestro heat-like repeat family member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-69126549-4	chr3	69126477	69126677	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008467, intron 1 of 16)	CpG	515.0	NM_008467	16649.0	Mm.30601	NM_008467	ENSMUSG00000027782	Kpna4	1110058D08Rik|IPOA3	karyopherin (importin) alpha 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-152471163-2	chr2	152471063	152471263	+	837.416626	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR18-int|LTR|ERVK	-5900.0	NM_176950	319579.0	Mm.190454	NM_176950	ENSMUSG00000049560	Defb20	9230107O10Rik|BD-20|mBD-20	defensin beta 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-87026709-4	chr11	87026623	87026823	+	993.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32961.0	NM_001005341	77864.0	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-30128995-4	chr2	30128888	30129088	+	961.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-4377.0	NM_001290503	227693.0	Mm.44526	NM_178694	ENSMUSG00000039686	Zer1	C230075L19Rik|Zyg11bl	zyg-11 related, cell cycle regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101902900-2	chr7	101902800	101903000	+	645.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081679, intron 1 of 3)	B3|SINE|B2	885.0	NM_001282088	791260.0	Mm.475469	NM_001081679	ENSMUSG00000078630	Tomt	Comt2|F930017I19Rik	transmembrane O-methyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-25364250-7	chr15	25364143	25364343	+	879.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027395, exon 2 of 2)	exon (NM_027395, exon 2 of 2)	49521.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-86973067-6	chr17	86973008	86973208	+	982.4074099999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145491, intron 2 of 4)	intron (NM_145491, intron 2 of 4)	9997.0	NM_145491	104215.0	Mm.826	NM_145491	ENSMUSG00000024143	Rhoq	Arhq|TC10A|Tc10	ras homolog family member Q	protein-coding	-1.84374347077615	-1.81334054547557	-1.82253464103011	-1.68542184837489	-1.84160924163507	-1.66668305012466	-1.8204532993254	-1.82873508608945	0.0376840119903869	0.991491645451152	1
Merged-chr7-27230928-2	chr7	27230828	27231028	+	703.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-2085.0	NM_133770	76889.0	Mm.124728	NM_133770	ENSMUSG00000003762	Coq8b	0610012P18Rik|Adck4	coenzyme Q8B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-5252489-2	chr17	5252389	5252589	+	700.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 5 of 19)	intron (NM_001085355, intron 5 of 19)	166278.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-51342686-4	chr3	51342554	51342754	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2010.0	NM_023502	69257.0	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-181598984-4	chr2	181598927	181599127	+	959.9249880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_172676, exon 1 of 5)	5' UTR (NM_172676, exon 1 of 5)	120.0	NM_172676	229011.0	Mm.205422	NM_172676	ENSMUSG00000038605	Samd10	D930033N23Rik|E130318E08	sterile alpha motif domain containing 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-66973614-3	chr3	66973542	66973742	+	808.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001302359, exon 5 of 5)	3' UTR (NM_001302359, exon 5 of 5)	5169.0	NM_001302358	20429.0	Mm.39093	NM_013665	ENSMUSG00000027833	Shox2	6330543G17Rik|OG12|Og12x|Prx3|SHOT	short stature homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-104629980-3	chr9	104629878	104630078	+	938.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028719, intron 1 of 15)	intron (NM_028719, intron 1 of 15)	60495.0	NM_028719	74020.0	Mm.326240	NM_028719	ENSMUSG00000032564	Cpne4	3632411M23Rik|4933406O10Rik	copine IV	protein-coding	0.634516319025766	0.293738912644647	0.287733682291481	0.794031493261394	0.642949512413028	0.774961479710339	0.289056996416958	0.442784305807778	0.165849607727185	0.927264087836777	1
Merged-chr15-97830946-3	chr15	97830886	97831086	+	867.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001204276, intron 1 of 25)	CpG	781.0	NM_019572	56233.0	Mm.384027	NM_019572	ENSMUSG00000022475	Hdac7	5830434K02Rik|HD7|HD7a|Hdac7a|mFLJ00062	histone deacetylase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70376350-4	chr11	70376249	70376449	+	971.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MEf|LINE|L1	-24318.0	NM_009660	11687.0	Mm.4584	NM_009660	ENSMUSG00000018924	Alox15	12-LO|12/15-LO|15-LOX|Alox12l|L-12LO	arachidonate 15-lipoxygenase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-52453190-4	chr16	52453091	52453291	+	983.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001331110)	promoter-TSS (NM_001331110)	-110.0	NM_001331110	11658.0	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-100617441-2	chr15	100617341	100617541	+	695.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011873, intron 2 of 3)	B2_Mm2|SINE|B2	1779.0	NM_011873	23994.0	Mm.486175	NM_011873	ENSMUSG00000000346	Dazap2	AI314727|Brbp|Gcap28|Prtb|gt6-12|mKIAA0058	DAZ associated protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-79181553-3	chr18	79181451	79181651	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-72160.0	NM_053099	240427.0	Mm.312871	NM_053099	ENSMUSG00000024548	Setbp1	C130092E12|Seb|mKIAA0437	SET binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165856215-4	chr2	165856105	165856305	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252587, intron 2 of 11)	intron (NM_001252587, intron 2 of 11)	1968.0	NM_001252585	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-86584435-6	chr6	86584380	86584580	+	974.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43694.0	NM_026414	67855.0	Mm.183043	NM_026414	ENSMUSG00000033508	Asprv1	2300003P22Rik|AA986851|SASP|SASPase|Taps	aspartic peptidase, retroviral-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-94994441-3	chr11	94994338	94994538	+	632.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172261, intron 1 of 9)	intron (NM_172261, intron 1 of 9)	3226.0	NM_172261	217124.0	Mm.229087	NM_172261	ENSMUSG00000038976	Ppp1r9b	SPL|Spn	protein phosphatase 1, regulatory subunit 9B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-63051274-4	chr11	63051193	63051393	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10366.0	NM_027660	71062.0	Mm.23534	NM_027660	ENSMUSG00000042189	Tekt3	4933407G07Rik	tektin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-122892685-4	chr6	122892616	122892816	+	819.950012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18159.0	NM_026267	67602.0	Mm.288114	NM_026267	ENSMUSG00000030327	Necap1	1200016B17Rik|AI747569|mFLJ00061	NECAP endocytosis associated 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-117914101-4	chr2	117914008	117914208	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_126479, intron 8 of 9)	intron (NR_126479, intron 8 of 9)	92180.0	NR_040631	73938.0	Mm.399107	NR_040631	ENSMUSG00000086221	4930412B13Rik	-	RIKEN cDNA 4930412B13 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127971180-2	chr7	127971080	127971280	+	707.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347649, intron 3 of 14)	intron (NM_001347649, intron 3 of 14)	3701.0	NM_139149	233908.0	Mm.277680	NM_139149	ENSMUSG00000030795	Fus	D430004D17Rik|D930039C12Rik|Fus1|Tls	fused in sarcoma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-26452979-5	chr11	26452999	26453199	+	920.857117	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_102382, intron 7 of 11)	MTD|LTR|ERVL-MaLR	66015.0	NR_102382	67030.0	Mm.18875	NM_025923	ENSMUSG00000004018	Fancl	2010322C19Rik|AW554273|B230118H11Rik|Phf9|Pog|gcd	Fanconi anemia, complementation group L	protein-coding	2.02214107456874	2.38114406060109	2.47736378774963	1.76456603527936	1.69181632315323	1.24755197960715	2.21390220358984	1.61387126658645	-1.20583330226502	0.227332994853331	0.720301392319614
Merged-chr5-125346999-2	chr5	125346918	125347118	+	643.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5924.0	NM_001205083	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	0.417801211935348	1.58206293612052	0.44750552706449	1.24243248513726	0.420633336693669	0.464468745813451	0.450598602589861	1.624225388491	-0.583559412045027	0.855711303153455	0.998431161219273
Merged-chr17-57422554-2	chr17	57422454	57422654	+	734.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355722, intron 12 of 22)	Lx5|LINE|L1	63868.0	NM_010130	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-51580281-1	chr1	51580181	51580381	+	544.0	f0_balb.idr	intron (NR_151621, intron 3 of 3)	intron (NR_151621, intron 3 of 3)	16437.0	NR_151621	100045066.0	Mm.404734	NR_151621		Gm17767	-	predicted gene, 17767	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165402932-4	chr2	165402861	165403061	+	634.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2567.0	NM_029021	74614.0	Mm.72179	NM_029021	ENSMUSG00000027670	Ocstamp	4833422F24Rik|OC-STAMP	osteoclast stimulatory transmembrane protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-6241201-3	chr13	6241072	6241272	+	807.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-306985.0	NM_145131	69617.0	Mm.41933	NM_145131	ENSMUSG00000021193	Pitrm1	2310012C15Rik|AA410010|MP-1|MP1|Ntup1|PreP|mKIAA1104	pitrilysin metallepetidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-34146188-2	chr10	34146034	34146234	+	720.349976	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-18162.0	NM_175449	215900.0	Mm.34479	NM_175449	ENSMUSG00000046031	Fam26f	A630077B13Rik|Calhm6	family with sequence similarity 26, member F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166805503-4	chr2	166805396	166805596	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001085495)	promoter-TSS (NM_001085495)	-85.0	NM_001085495	99371.0	Mm.297192	NM_001085495	ENSMUSG00000074582	Arfgef2	AI463430|AW493672|BIG2|E230011G24Rik	ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-122501055-4	chr8	122500985	122501185	+	759.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037298, intron 10 of 50)	intron (NM_001037298, intron 10 of 50)	24942.0	NR_152823	66965.0	Mm.482288	NM_153775	ENSMUSG00000049482	Ctu2	2310061F22Rik|C16orf84|Ncs2	cytosolic thiouridylase subunit 2	protein-coding	2.88280202871726	3.30440594252387	2.59664006769686	2.64601622068902	3.18546495321122	2.7048970891991	2.95867891991097	2.53752864278962	-0.0207607698705784	0.975518638082532	0.998431161219273
Merged-chr11-33170689-4	chr11	33170574	33170774	+	724.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7468.0	NM_008722	18148.0	Mm.485384	NM_008722	ENSMUSG00000057113	Npm1	B23|NO38|Npm	nucleophosmin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41258827-2	chr19	41258727	41258927	+	947.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133352, intron 1 of 14)	B3|SINE|B2	5177.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-24721897-3	chr6	24721799	24721999	+	861.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11346.0	NM_028920	74409.0	Mm.87331	NM_028920	ENSMUSG00000029679	Hyal6	4932701A20Rik|Hyal-ps1|Hyalp1	hyaluronoglucosaminidase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-100189688-2	chr3	100189588	100189788	+	713.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_104341, intron 8 of 13)	intron (NR_104341, intron 8 of 13)	27225.0	NR_104341	14547.0	Mm.279228	NM_010269	ENSMUSG00000027865	Gdap2	C77050|D3Ertd801e	ganglioside-induced differentiation-associated-protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140740898-2	chr5	140740798	140740998	+	644.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_173405, intron 2 of 7)	(CA)n|Simple_repeat|Simple_repeat	16771.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-4565114-2	chr2	4565014	4565214	+	881.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177844, intron 1 of 11)	RLTR20B4_MM|LTR|ERVK	5360.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140615863-4	chr5	140615770	140615970	+	879.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008494)	TTS (NM_008494)	8529.0	NM_008494	16848.0	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-73524322-2	chr14	73524222	73524422	+	863.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172527, intron 3 of 4)	intron (NM_172527, intron 3 of 4)	927.0	NM_001360484	214254.0	Mm.386852	NM_172527	ENSMUSG00000033405	Nudt15	6530403O17|A730068G11Rik|MTH2	nudix (nucleoside diphosphate linked moiety X)-type motif 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115266397-2	chr11	115266297	115266497	+	828.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010350, intron 2 of 14)	intron (NM_010350, intron 2 of 14)	846.0	NM_010350	14813.0	Mm.39090	NM_010350	ENSMUSG00000020734	Grin2c	GluN2C|NMDAR2C|NR2C	glutamate receptor, ionotropic, NMDA2C (epsilon 3)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-21463483-4	chr9	21463360	21463560	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357721, intron 2 of 19)	intron (NM_001357721, intron 2 of 19)	33104.0	NR_029585	387194.0		NR_029585	ENSMUSG00000065547	Mir199a-1	Mirn199|Mirn199a-1|mir-199a-1	microRNA 199a-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-144380226-2	chr1	144380126	144380326	+	777.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-131122.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6840857-6	chr19	6840861	6841061	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019924)	promoter-TSS (NM_019924)	-334.0	NM_019924	56613.0	Mm.20914	NM_019924	ENSMUSG00000024952	Rps6ka4	1110069D02Rik|90kDa|AI848992|Msk2|mMSK2	ribosomal protein S6 kinase, polypeptide 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126145538-2	chr7	126145402	126145602	+	755.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_028816, intron 8 of 23)	RMER15|LTR|ERVL	54999.0	NM_001311143	74204.0	Mm.235663	NM_028816	ENSMUSG00000000131	Xpo6	2610005L19Rik|AL022631|C230091E20Rik|R75304|Ranbp20|exp6|mKIAA0370	exportin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-6267121-4	chr15	6267040	6267240	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-32649.0	NM_001008702	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-30755251-4	chr10	30755077	30755277	+	894.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358842, intron 2 of 14)	intron (NM_001358842, intron 2 of 14)	48149.0	NM_001358841	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-79672029-4	chr1	79671931	79672131	+	963.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183027)	promoter-TSS (NM_183027)	-59.0	NM_183027	252903.0	Mm.32409	NM_183027	ENSMUSG00000054702	Ap1s3	1190009B22|Jr2|[s]3A	adaptor-related protein complex AP-1, sigma 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-63926644-2	chr15	63926544	63926744	+	868.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12183.0	NR_029414	74460.0	Mm.390801	NR_029414	ENSMUSG00000100127	Gsdmcl-ps	4933426G20Rik	gasdermin C-like, pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-34302267-2	chr16	34302167	34302367	+	613.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_177357, intron 9 of 59)	intron (NM_177357, intron 9 of 59)	211760.0	NM_001164268	545156.0	Mm.82274	NM_177357	ENSMUSG00000061751	Kalrn	2210407G14Rik|AV235988|DUET|E530005C20Rik|Gm539|Hapip|TRAD	kalirin, RhoGEF kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-111100272-4	chr10	111100172	111100372	+	887.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64530.0	NM_001003717	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-19417463-4	chr14	19417396	19417596	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GSAT_MM|Satellite|Satellite	185091.0	NM_001024706	432825.0	Mm.327147	NM_001024706	ENSMUSG00000095024	Gm5458	EG432825	predicted gene 5458	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-102893170-2	chr11	102893070	102893270	+	627.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_010277, exon 6 of 9)	exon (NM_010277, exon 6 of 9)	4030.0	NM_001131020	14580.0	Mm.1239	NM_010277	ENSMUSG00000020932	Gfap	AI836096	glial fibrillary acidic protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-35984079-4	chr2	35983976	35984176	+	850.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4452.0	NM_029774	74410.0	Mm.21591	NM_028921	ENSMUSG00000026885	Ttll11	4932702F08Rik|4933424A20Rik|AU043211|D2Ertd624e	tubulin tyrosine ligase-like family, member 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-23731124-1	chr13	23731024	23731224	+	842.0	f1_balb.idr	Intergenic	Intergenic	-7683.0	NM_015786	50708.0	Mm.193539	NM_015786	ENSMUSG00000036181	Hist1h1c	0610008C09Rik|H1.2|H1c|H1f2|H1var1|His1a	histone cluster 1, H1c	protein-coding	-0.499940950918087	-0.487518524828365	0.0891561271406926	-0.494726023626598	-0.499164980458282	-0.486601867615524	0.100277611126392	-0.494177430718284	0.0410194320726077	0.98816738256539	1
Merged-chr4-139242638-4	chr4	139242545	139242745	+	985.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037761, intron 2 of 9)	intron (NM_001037761, intron 2 of 9)	48534.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	5.4165321398832	4.84239548092408	5.81482738971298	5.96444096971085	5.60509403916454	5.59073689872164	5.80573547020879	5.70490478174285	0.113413042230495	0.692457889384737	0.99740158133691
Merged-chr13-5424596-3	chr13	5424517	5424717	+	873.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15-int|LTR|ERVL	433475.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-74247206-3	chr13	74247097	74247297	+	695.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001317351, intron 3 of 9)	intron (NM_001317351, intron 3 of 9)	-38497.0	NM_177333	211446.0	Mm.261859	NM_177333	ENSMUSG00000034152	Exoc3	2810050O03Rik|E430013E20Rik|Sec6|Sec6l1	exocyst complex component 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-70852927-5	chr17	70852790	70852990	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164074, intron 1 of 2)	CpG	642.0	NM_001164074	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-34858166-4	chr18	34858074	34858274	+	940.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1K|LTR|ERVL-MaLR	-3033.0	NM_007913	13653.0	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-27023127-4	chr8	27023017	27023217	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153592)	promoter-TSS (NM_153592)	-682.0	NM_153592	244373.0	Mm.277699	NM_153592	ENSMUSG00000031483	Erlin2	BC036333|C87251|Spfh2	ER lipid raft associated 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127514878-3	chr10	127514803	127515003	+	681.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001098789)	promoter-TSS (NM_001098789)	-36.0	NM_001098789	407790.0	Mm.336856	NM_001098789	ENSMUSG00000040280	Ndufa4l2	BC064011	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-26129178-3	chr11	26129083	26129283	+	791.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027973, intron 1 of 5)	BGLII|LTR|ERVK	-73057.0	NR_105791	102466154.0		NR_105791	ENSMUSG00000099015	Mir6372	Gm27358|mmu-mir-6372	microRNA 6372	ncRNA	0.80766631532371	1.42768179443328	1.50562464289357	1.91571428052245	0.989325816171919	1.27833103754121	0.84177803141161	1.57809733232965	-1.0079469215036	0.454391972846176	0.919120493489568
Merged-chr19-29468186-2	chr19	29468086	29468286	+	675.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021396, intron 5 of 5)	RMER17C|LTR|ERVK	53801.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-34865383-4	chr18	34865341	34865541	+	939.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_007913)	TTS (NM_007913)	4234.0	NM_007913	13653.0	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-130081432-4	chr5	130081328	130081528	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001130476, intron 1 of 5)	intron (NM_001130476, intron 1 of 5)	2058.0	NM_001130476	22021.0	Mm.332720	NM_013837	ENSMUSG00000034118	Tpst1	R75054|Tango13a	protein-tyrosine sulfotransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-63114543-6	chr1	63114435	63114635	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081436)	promoter-TSS (NM_001081436)	64.0	NR_045915	100380944.0	Mm.392955	NR_045914	ENSMUSG00000084799	Ino80dos	Gm11602	INO80 complex subunit D, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-62326230-2	chr10	62326130	62326330	+	907.099976	f1_balb.idr|f1_c57bl6.idr	intron (NM_010438, intron 4 of 21)	intron (NM_010438, intron 4 of 21)	14191.0	NM_001146100	15275.0	Mm.196605	NM_010438	ENSMUSG00000037012	Hk1	BB404130|Hk-1|Hk1-s|dea|mHk1-s	hexokinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-36799589-2	chr18	36799489	36799689	+	819.75	f1_balb.idr|f1_c57bl6.idr	TTS (NM_025594)	TTS (NM_025594)	-2174.0	NR_027885	378472.0	Mm.482379	NR_027885		Vaultrc5	Gm22653|Mvg1	vault RNA component 5	ncRNA	-1.26297147305202	-1.51336964835199	-1.52290115558626	-1.53073061942109	-1.54267576991114	-1.36133000838898	-1.52074343127311	-1.52932914913802	-0.563746499231123	0.872676935132172	1
Merged-chr16-41038878-2	chr16	41038778	41038978	+	634.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361281, intron 2 of 8)	Lx2|LINE|L1	-493948.0	NM_001347236	268890.0	Mm.310524	NM_175548	ENSMUSG00000061080	Lsamp	5430428I19|AW046674|B130007O04Rik|D930023J12Rik|Gm29907|Lam|Lamp	limbic system-associated membrane protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-35874575-4	chr18	35874480	35874680	+	891.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19893.0	NM_001357459	67393.0	Mm.94560	NM_133687	ENSMUSG00000046668	Cxxc5	4930415K17Rik	CXXC finger 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-56220025-4	chr17	56219929	56220129	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1140.0	NM_172624	224897.0	Mm.205535	NM_172624	ENSMUSG00000001229	Dpp9	6430584G11Rik|A330078I11|DPP IX|DPRP2	dipeptidylpeptidase 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-80055997-4	chr7	80055873	80056073	+	847.474976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175433, intron 1 of 4)	intron (NM_175433, intron 1 of 4)	19284.0	NR_045695	100859962.0	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-4605689-2	chr13	4605592	4605792	+	688.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_018859, intron 2 of 9)	intron (NM_018859, intron 2 of 9)	3472.0	NM_018859	56043.0	Mm.251908	NM_018859	ENSMUSG00000045410	Akr1e1	1810061I10Rik|Akr1e2	aldo-keto reductase family 1, member E1	protein-coding	-1.18378942727406	-1.15669478905697	-0.457913181653105	-1.17806440097404	-1.18323730008524	-1.15415234459186	-1.16577117532349	-1.17633933179771	-2.81844548480871	0.412768592413622	1
Merged-chr13-98968195-2	chr13	98968090	98968290	+	600.0	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	16375.0	NM_027064	69382.0	Mm.45466	NM_027064	ENSMUSG00000045022	1700024P04Rik	H2bl1|Subh2bv	RIKEN cDNA 1700024P04 gene	protein-coding	1.83817241241587	2.72727882418437	1.32961958050921	1.55373898686565	2.34616942954597	2.74802658256261	2.55148412147977	3.0306775009596	1.55814803234791	0.0863546734878139	0.451721767239936
Merged-chr4-108768710-1	chr4	108768610	108768810	+	723.0	f0_balb.idr	intron (NM_001347163, intron 1 of 18)	LTR16B1|LTR|ERVL	12378.0	NM_001347163	230597.0	Mm.196776	NM_183300	ENSMUSG00000034557	Zfyve9	Madhip|NSP|SARA|SMADIP	zinc finger, FYVE domain containing 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95687927-4	chr3	95687802	95688002	+	992.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144899)	promoter-TSS (NM_144899)	15.0	NM_144899	229595.0	Mm.490574	NM_144899	ENSMUSG00000015850	Adamtsl4	ADAMTSL-4|Tsrc1	ADAMTS-like 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-125391220-3	chr5	125391128	125391328	+	877.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-1211.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-66135836-4	chr7	66135736	66135936	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081163, intron 2 of 2)	intron (NM_001081163, intron 2 of 2)	26321.0	NM_001081163	269941.0	Mm.333916	NM_001081163	ENSMUSG00000032640	Chsy1	mKIAA0990	chondroitin sulfate synthase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6054512-2	chr19	6054412	6054612	+	663.333374	f1_balb.idr|f1_c57bl6.idr	TTS (NM_028769)	TTS (NM_028769)	3178.0	NR_105954	102465597.0		NR_105954	ENSMUSG00000098928	Mir6988	Gm27593|mmu-mir-6988	microRNA 6988	ncRNA	-0.174003754594342	-0.153050816274975	-0.159834933706096	0.892867644687745	-0.172673851601802	-0.151531872131677	0.501127225323933	-0.164194631679118	-0.998502163537056	0.678761920217713	1
Merged-chr10-82699105-4	chr10	82699001	82699201	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081218)	promoter-TSS (NM_001081218)	94.0	NM_001081218	67933.0	Mm.127405	NM_026462	ENSMUSG00000020246	Hcfc2	1700129L13Rik|AU019838|fkls	host cell factor C2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-109030817-4	chr3	109030717	109030917	+	974.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3210.0	NM_001163567	329739.0	Mm.69013	NM_001163567	ENSMUSG00000040339	Fam102b	1600010D10Rik|B430201A12Rik	family with sequence similarity 102, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-106764851-1	chr1	106764751	106764951	+	571.0	f1_c57bl6.idr	Intergenic	Intergenic	-5109.0	NM_001316750	70750.0	Mm.458911	NM_027534	ENSMUSG00000009905	Kdsr	6330410P18Rik|9430079B08Rik|Fvt1	3-ketodihydrosphingosine reductase	protein-coding	0.338258873542011	-0.125221673537348	-0.130360685577067	-0.134329156723998	0.136736122106538	0.617053587309762	-0.129226804841505	-0.13363563639563	1.22028394206846	0.599752687556202	1
Merged-chr6-83690443-4	chr6	83690352	83690552	+	771.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	-12595.0	NM_144943	246278.0	Mm.136079	NM_144943	ENSMUSG00000034783	Cd207	-	CD207 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-69383470-3	chr13	69383353	69383553	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	150411.0	NM_198600	210106.0	Mm.315959	NM_198600	ENSMUSG00000034575	Papd7	LAK-1|POLK|Pols|TRF4|TRF4-1	PAP associated domain containing 7	protein-coding	5.3374988165867	5.72788367561217	5.27462095641933	5.17514340799113	2.08724773892748	3.04802886060519	3.33565871126084	2.9567086660276	-3.2794387568741	5.7359756363237e-13	2.02412457895917e-10
Merged-chr6-86396142-4	chr6	86396059	86396259	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025823, intron 1 of 5)	intron (NM_025823, intron 1 of 5)	991.0	NM_001355687	66881.0	Mm.30849	NM_025823	ENSMUSG00000029998	Pcyox1	1200015P13Rik|AI115532|AI448340|PCL1|Pcly	prenylcysteine oxidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-21141874-4	chr2	21141801	21142001	+	839.633301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	63464.0	NM_027728	71233.0	Mm.27658	NM_027728	ENSMUSG00000026679	Enkur	4933434I06Rik|AU016229	enkurin, TRPC channel interacting protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141431239-3	chr4	141431140	141431340	+	700.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4865.0	NM_001033374	277744.0	Mm.33952	NM_001033374	ENSMUSG00000070637	Srarp	Gm694	steroid receptor associated and regulated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-30597134-4	chr12	30597028	30597228	+	971.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12685.0	NM_172049	211986.0	Mm.34035	NM_172049	ENSMUSG00000043061	Tmem18	BC024093	transmembrane protein 18	protein-coding	3.86156199774459	3.74513218405995	2.47646062760819	3.44628231956678	4.06581284875591	2.93051850663419	3.97846835540995	3.0994698060824	0.206927700933837	0.730554375413219	0.998431161219273
Merged-chr12-76576763-2	chr12	76576663	76576863	+	706.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_153804, exon 18 of 19)	exon (NM_153804, exon 18 of 19)	-28838.0	NR_046044	100504549.0	Mm.440349	NR_046044	ENSMUSG00000112388	AI463170	-	expressed sequence AI463170	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135907096-4	chr5	135907006	135907206	+	983.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	19187.0	NM_013560	15507.0	Mm.13849	NM_013560	ENSMUSG00000004951	Hspb1	27kDa|Hsp25	heat shock protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-154096332-4	chr1	154096251	154096451	+	932.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-104836.0	NM_001204908	100503355.0	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	Gm10178|Gm203	zinc finger protein 648	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-52015772-5	chr14	52015695	52015895	+	897.966675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253694, intron 1 of 5)	MIRb|SINE|MIR	-1070.0	NM_001033805	619301.0	Mm.475177	NM_001033805	ENSMUSG00000072571	Tmem253	G630016D24Rik	transmembrane protein 253	protein-coding	0.706460358111494	0.305096758014352	0.454021088601497	0.766572323248277	0.792944203513417	0.30620263264602	0.45843090551486	0.297146448718922	-0.611807876039012	0.739925614161615	1
Merged-chr9-106372024-4	chr9	106371930	106372130	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153459, intron 2 of 2)	intron (NM_153459, intron 2 of 2)	3398.0	NM_153459	235584.0	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	5.00884532688428	5.05093729245315	4.02648876649928	5.72514176841697	5.01663091717121	3.85076334926832	4.56570063165013	5.23331927291098	-0.37354364848323	0.377091222389594	0.87006021545855
Merged-chr7-55956957-4	chr7	55956848	55957048	+	673.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023647, intron 1 of 6)	MTD|LTR|ERVL-MaLR	5545.0	NM_001256133	93790.0	Mm.37249	NM_023647	ENSMUSG00000030452	Nipa2	2600017P10Rik|3830408P04Rik|AB041581	non imprinted in Prader-Willi/Angelman syndrome 2 homolog (human)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-31967759-4	chr12	31967663	31967863	+	990.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011158, intron 6 of 10)	intron (NM_011158, intron 6 of 10)	-17518.0	NM_001361928	73389.0	Mm.390461	NM_153198	ENSMUSG00000002996	Hbp1	1700058O05Rik|BE629963|C330012F01Rik|C86454	high mobility group box transcription factor 1	protein-coding	3.56090696922549	2.53986352486447	3.78446080505464	3.80087005982069	3.26011337978077	3.16026011041689	2.64114222610695	3.97681279662631	-0.246450135015688	0.688588990209178	0.996533206832645
Merged-chr17-71178708-3	chr17	71178593	71178793	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr	Intergenic	Intergenic	-4839.0	NM_001357791	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	3.51362473759926	3.78060997244572	3.58083306761559	3.55768727917358	3.82712355314094	3.35219223423665	2.71451156735871	4.10558188095584	0.00393014539451662	0.994255611948416	0.998431161219273
Merged-chr2-166048458-1	chr2	166048358	166048558	+	562.0	f1_c57bl6.idr	exon (NM_008679, exon 5 of 23)	exon (NM_008679, exon 5 of 23)	55821.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	0.114736784168854	-0.023082778031847	0.787809924024131	0.736968194085347	-0.041646942806407	-0.0216354627041861	-0.0281035551505987	-0.0336558153753431	-4.10605144306926	0.0575235003422808	1
Merged-chr11-96980193-2	chr11	96980093	96980293	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2505.0	NM_001080964	78912.0	Mm.491183	NM_030220	ENSMUSG00000018678	Sp2	4930480I16Rik|mKIAA0048	Sp2 transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-40713522-2	chr19	40713422	40713622	+	614.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001304721, intron 2 of 9)	intron (NM_001304721, intron 2 of 9)	53752.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-13817953-4	chr17	13817844	13818044	+	904.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151731, intron 5 of 33)	intron (NR_151731, intron 5 of 33)	-56550.0	NM_022311	21646.0	Mm.486358	NM_022311	ENSMUSG00000038347	Tcte2	AI429268|Tcte-2	t-complex-associated testis expressed 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55294238-4	chr19	55294138	55294338	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027976, exon 19 of 22)	exon (NM_027976, exon 19 of 22)	21798.0	NM_001360595	66980.0	Mm.386789	NM_025883	ENSMUSG00000024982	Zdhhc6	2400007G07Rik|5930409M18Rik|AI462345|C77369|DHHC-6	zinc finger, DHHC domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141512352-3	chr4	141512258	141512458	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347235, intron 3 of 14)	intron (NM_001347235, intron 3 of 14)	26239.0	NM_001347235	56381.0	Mm.299906	NM_019763	ENSMUSG00000040761	Spen	Mint|mKIAA0929	spen family transcription repressor	protein-coding	4.32290467931249	3.64496214524057	4.33310003626278	4.50179817638559	1.18170204175194	1.42191892898606	1.35063338913132	1.86784486182094	-5.80517346900013	1.04995349234227e-07	9.21756731789455e-06
Merged-chr11-119428477-1	chr11	119428377	119428577	+	1000.0	f1_c57bl6.idr	Intergenic	B4A|SINE|B4	38005.0	NR_035453	100316690.0		NR_035453	ENSMUSG00000088015	Mir1932	mir-1932|mmu-mir-1932	microRNA 1932	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-38054889-4	chr19	38054789	38054989	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360663)	promoter-TSS (NM_001360663)	-95.0	NM_028293	74107.0	Mm.9916	NM_028293	ENSMUSG00000024989	Cep55	1200008O12Rik|2700032M20Rik	centrosomal protein 55	protein-coding	-1.84354474832578	-1.81325489144778	-1.53416061964661	-1.82993901100912	-1.8414184563789	-1.81126990231468	-1.82034119297928	-1.82859217979378	-1.52252619601533	0.665276690233728	1
Merged-chr11-53567397-4	chr11	53567317	53567517	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290805)	promoter-TSS (NM_001290805)	48.0	NM_001290806	16568.0	Mm.88694	NM_008443	ENSMUSG00000018395	Kif3a	Kif3|Kifl|Kns3	kinesin family member 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-6569939-4	chr15	6569827	6570027	+	877.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9920.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-192141354-1	chr1	192141254	192141454	+	622.0	f1_c57bl6.idr	intron (NR_033536, intron 1 of 3)	intron (NR_033536, intron 1 of 3)	-3314.0	NM_001290282	214742.0	Mm.207457	NM_144814	ENSMUSG00000037395	Rcor3	4921514E24Rik|C730034D20Rik|E130101E15Rik	REST corepressor 3	protein-coding	0.475388299052953	1.40588245387778	1.00715222738494	1.19327064243559	0.47737281853344	1.06638649245526	0.498788295651831	0.490030999612682	-2.12019127378848	0.224414789828019	0.716302896348785
Merged-chr6-134607526-4	chr6	134607434	134607634	+	800.950012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	24954.0	NM_026345	67729.0	Mm.57648	NM_026345	ENSMUSG00000032718	Mansc1	9130403P13Rik	MANSC domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80715845-2	chr10	80715745	80715945	+	833.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007460, intron 16 of 30)	intron (NM_007460, intron 16 of 30)	13152.0	NM_027829	71564.0	Mm.35802	NM_027829	ENSMUSG00000055862	Izumo4	9030607L17Rik|AI550407	IZUMO family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127607261-4	chr10	127607162	127607362	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 4 of 88)	L1ME3G|LINE|L1	13886.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	4.44118394655364	4.64947869692453	6.14090961864576	4.75506908238175	4.07045126412414	4.62511601291642	5.90721270227052	5.07516509530216	-0.114993117443353	0.803005980113145	0.998431161219273
Merged-chr16-87713152-4	chr16	87713023	87713223	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007520, intron 1 of 4)	intron (NM_007520, intron 1 of 4)	14169.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127027379-4	chr7	127027281	127027481	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010772)	promoter-TSS (NM_010772)	-902.0	NM_010772	17188.0	Mm.378964	NM_010772	ENSMUSG00000030678	Maz	MAZI|PUR1|Pur-1|SAF-1|SAF-2	MYC-associated zinc finger protein (purine-binding transcription factor)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-103352427-2	chr15	103352327	103352527	+	665.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001314041, intron 16 of 30)	intron (NM_001314041, intron 16 of 30)	-1902.0	NR_105928	102466775.0		NR_105928	ENSMUSG00000098419	Mir6963	Gm27724|mmu-mir-6963	microRNA 6963	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-9154351-3	chr3	9154239	9154439	+	880.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	92375.0	NR_040597	75149.0	Mm.399324	NR_040597	ENSMUSG00000103116	4930539M17Rik	-	RIKEN cDNA 4930539M17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41310362-1	chr19	41310262	41310462	+	914.0	f1_balb.idr	intron (NM_031376, intron 8 of 16)	intron (NM_031376, intron 8 of 16)	-46358.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	0.416726642269162	0.247227264803207	0.232909725501608	0.221532475486754	1.3748466818577	1.81346855004569	0.236107966591397	0.223541857843005	4.11627521447018	0.0274673322464338	0.223072914458064
Merged-chr10-10429838-4	chr10	10429757	10429957	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127353, intron 9 of 36)	intron (NM_001127353, intron 9 of 36)	42457.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-11018387-2	chr16	11018287	11018487	+	824.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	9489.0	NR_040518	100043147.0	Mm.489001	NR_040518	ENSMUSG00000097056	Gm4262	-	predicted gene 4262	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-58903129-3	chr9	58903049	58903249	+	819.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008684, intron 19 of 28)	intron (NM_008684, intron 19 of 28)	79637.0	NM_001081192	330953.0	Mm.151967	NM_001081192	ENSMUSG00000032338	Hcn4	Bcng3|Hcn3	hyperpolarization-activated, cyclic nucleotide-gated K+ 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120406248-2	chr8	120406148	120406348	+	682.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-82618.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-25007975-4	chr8	25007881	25008081	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001270996, intron 1 of 21)	intron (NM_001270996, intron 1 of 21)	8941.0	NM_001270996	11502.0	Mm.28908	NM_007404	ENSMUSG00000031555	Adam9	AU020942|MDC9|Mltng|mKIAA0021	a disintegrin and metallopeptidase domain 9 (meltrin gamma)	protein-coding	3.38296291956099	2.11389962328259	1.52480714669933	2.47576513467565	3.41006489091568	3.40436950167304	3.36722793062863	2.61906245034148	1.15408133983265	0.137754650894783	0.578974883735034
Merged-chr7-73561991-2	chr7	73561891	73562091	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3596.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-122146843-4	chr2	122146759	122146959	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009735)	promoter-TSS (NM_009735)	-828.0	NM_009735	12010.0	Mm.163	NM_009735	ENSMUSG00000060802	B2m	Ly-m11|beta2-m|beta2m	beta-2 microglobulin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-3927121-2	chr19	3927021	3927221	+	865.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026316, intron 1 of 9)	intron (NM_026316, intron 1 of 9)	2595.0	NM_026316	67689.0	Mm.109341	NM_026316	ENSMUSG00000024885	Aldh3b1	1700001N19Rik|ALDH4|ALDH7	aldehyde dehydrogenase 3 family, member B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-10676857-2	chr16	10676757	10676957	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177562, intron 18 of 22)	intron (NM_177562, intron 18 of 22)	108679.0	NM_009896	12703.0	Mm.130	NM_009896	ENSMUSG00000038037	Socs1	Cish1|Cish7|JAB|SOCS-1|SSI-1	suppressor of cytokine signaling 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45530662-2	chr7	45530562	45530762	+	689.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_148927, intron 2 of 19)	intron (NM_148927, intron 2 of 19)	4332.0	NM_148927	69217.0	Mm.274158	NM_148927	ENSMUSG00000040428	Plekha4	2410005C22Rik|C88169|Pepp1	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5648886-4	chr19	5648758	5648958	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009045)	TTS (NM_009045)	11368.0	NM_009045	19697.0	Mm.249966	NM_009045	ENSMUSG00000024927	Rela	p65	v-rel reticuloendotheliosis viral oncogene homolog A (avian)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-3519993-4	chr2	3519892	3520092	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177647, intron 2 of 3)	RMER10A|LTR|ERVL	6927.0	NM_177647	227526.0	Mm.211455	NM_177647	ENSMUSG00000039496	Cdnf	9330140G23|Armetl1	cerebral dopamine neurotrophic factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-86165863-2	chr15	86165763	86165963	+	963.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_145475, exon 2 of 13)	exon (NM_145475, exon 2 of 13)	-19865.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-99335204-5	chr5	99335134	99335334	+	903.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-82307.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-11553786-3	chr11	11553684	11553884	+	858.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1H|LTR|ERVL-MaLR	64518.0	NM_028669	73862.0	Mm.159077	NM_028669	ENSMUSG00000020191	Spata48	4930415F15Rik	spermatogenesis associated 48	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-133101590-2	chr1	133101490	133101690	+	647.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001099276, intron 28 of 32)	intron (NM_001099276, intron 28 of 32)	-29576.0	NM_133819	108954.0	Mm.293628	NM_133819	ENSMUSG00000046062	Ppp1r15b	1810033K10Rik|AI606441|C530022L24Rik|CReP	protein phosphatase 1, regulatory (inhibitor) subunit 15b	protein-coding	-1.20406370813143	-1.56956373024278	-1.57884638916872	-1.58647144159385	-1.598104728449	-1.56755213932999	-1.57674499865798	-1.58510656085539	-1.70745470802464	0.626337835847419	1
Merged-chr8-84069919-4	chr8	84069806	84070006	+	625.366638	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009055, intron 1 of 20)	intron (NM_009055, intron 1 of 20)	3070.0	NM_009055	19724.0	Mm.7892	NM_009055	ENSMUSG00000031706	Rfx1	AI047719|AI385641	regulatory factor X, 1 (influences HLA class II expression)	protein-coding	0.0470190848716096	0.225858397026035	0.206854351463933	0.314572376317215	0.171495424053667	0.495640890681697	0.0559205540611796	0.318659415901492	0.633304189106423	0.738872063934477	1
Merged-chr19-5107082-4	chr19	5106984	5107184	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029576)	promoter-TSS (NM_029576)	-88.0	NM_029576	76308.0	Mm.182563	NM_029576	ENSMUSG00000024870	Rab1b	1110011F09Rik	RAB1B, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-57395581-2	chr16	57395481	57395681	+	799.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	42304.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100501335-2	chr7	100501241	100501441	+	742.5	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	7983.0	NM_011671	22228.0	Mm.171378	NM_011671	ENSMUSG00000033685	Ucp2	Slc25a8|UCP 2|UCPH	uncoupling protein 2 (mitochondrial, proton carrier)	protein-coding	-0.324602071114597	-0.778475245042255	-0.33360137421374	-0.78384742906004	-0.787139562736673	-0.777299700783557	-0.780842354194113	-0.783439682930647	-3.09252491007168	0.294506589172968	1
Merged-chr9-123814932-2	chr9	123814832	123815032	+	758.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110253, intron 14 of 17)	intron (NM_001110253, intron 14 of 17)	8455.0	NM_030712	80901.0	Mm.124289	NM_030712	ENSMUSG00000048521	Cxcr6	BB217514|BONZO|STRL33	chemokine (C-X-C motif) receptor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-142865321-2	chr6	142865221	142865421	+	589.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_011374, intron 4 of 4)	intron (NM_011374, intron 4 of 4)	51090.0	NR_045707	665037.0	Mm.401493	NR_045707	ENSMUSG00000072683	Gm7457	EG665037	predicted gene 7457	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-34859738-4	chr1	34859616	34859816	+	747.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357425, intron 2 of 8)	intron (NM_001357425, intron 2 of 8)	9727.0	NM_001357425	226971.0	Mm.292751	NM_145516	ENSMUSG00000026123	Plekhb2	2310009M15Rik|AU018239|Evt2|Phdc|evt-2	pleckstrin homology domain containing, family B (evectins) member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-157043551-1	chr1	157043451	157043651	+	852.5	f0_balb.idr	Intergenic	Intergenic	65099.0	NM_001305059	73435.0	Mm.116705	NM_028540	ENSMUSG00000026592	Tex35	1700057K13Rik	testis expressed 35	protein-coding	1.00664772067306	1.48278380141863	0.852426743118614	0.83836790666266	1.73905889514467	1.77039412920157	1.08855764513147	2.08564669428395	2.45233009536921	0.0637060866086176	0.376074563860299
Merged-chr11-5020903-2	chr11	5020803	5021003	+	691.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001243043, intron 7 of 22)	intron (NM_001243043, intron 7 of 22)	34079.0	NM_001355660	11764.0	Mm.274816	NM_007454	ENSMUSG00000009090	Ap1b1	Adtb1|b2b1660Clo	adaptor protein complex AP-1, beta 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-97450916-4	chr6	97450718	97450918	+	932.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	L1_Mus1|LINE|L1	8468.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-73445314-3	chr12	73445207	73445407	+	943.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35744.0	NR_046013	380765.0	Mm.490476	NR_046013	ENSMUSG00000056359	D830013O20Rik	Gm891	RIKEN cDNA D830013O20 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-105283324-4	chr8	105283221	105283421	+	940.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001166394, exon 5 of 7)	exon (NM_001166394, exon 5 of 7)	6207.0	NM_001166394	74356.0	Mm.204876	NM_028888	ENSMUSG00000014837	4931428F04Rik	AI426165|Kiaa0895l	RIKEN cDNA 4931428F04 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-150405638-3	chr1	150405544	150405744	+	764.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133780, intron 7 of 51)	intron (NM_133780, intron 7 of 51)	-12564.0	NM_001357579	226499.0	Mm.222093	NM_145511	ENSMUSG00000006010	BC003331	1810053E15Rik|Odr4|odr-4	cDNA sequence BC003331	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-129534363-2	chr3	129534263	129534463	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_130450, intron 2 of 4)	intron (NM_130450, intron 2 of 4)	-1975.0	NR_153368	102639747.0	Mm.393257	NR_153368		Gm35986	-	predicted gene, 35986	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-139092955-3	chr4	139092850	139093050	+	690.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008675)	promoter-TSS (NM_008675)	20.0	NM_008675	17965.0	Mm.9404	NM_008675	ENSMUSG00000041120	Nbl1	D4H1S1733E|DAN|Dana|NO3	neuroblastoma, suppression of tumorigenicity 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-7144060-2	chr19	7143960	7144160	+	793.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_134147, intron 3 of 10)	intron (NM_134147, intron 3 of 10)	-38331.0	NM_201411	396184.0	Mm.386930	NM_201411	ENSMUSG00000047787	Flrt1	AW742165|D630040I23Rik	fibronectin leucine rich transmembrane protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-127082619-1	chr2	127082519	127082719	+	568.0	f1_balb.idr	intron (NM_026678, intron 2 of 7)	intron (NM_026678, intron 2 of 7)	11962.0	NM_026678	109778.0	Mm.22028	NM_026678	ENSMUSG00000001999	Blvra	0610006A11Rik|2500001N03Rik|Blvr	biliverdin reductase A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-110454351-4	chr12	110454261	110454461	+	910.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001135001, intron 2 of 13)	intron (NM_001135001, intron 2 of 13)	7182.0	NM_001135001	26931.0	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-28413735-4	chr15	28413625	28413825	+	977.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133365, intron 65 of 78)	intron (NM_133365, intron 65 of 78)	209959.0	NM_133365	110082.0	Mm.248464	NM_133365	ENSMUSG00000022262	Dnah5	AU022615|Dnahc5|Mdnah5|b2b1134Clo|b2b1154Clo|b2b1537Clo|b2b1565Clo|b2b3491Clo|b2b601Clo|mKIAA1603	dynein, axonemal, heavy chain 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-145219908-3	chr4	145219835	145220035	+	854.119019	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011610, exon 9 of 10)	exon (NM_011610, exon 9 of 10)	-24930.0	NM_001276465	230895.0	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-136321097-2	chr7	136320997	136321197	+	802.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28318.0	NR_040459	330664.0	Mm.127762	NR_040459	ENSMUSG00000109633	C230079O03Rik	C230079O03	RIKEN cDNA C230079O03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-64466893-2	chr18	64466793	64466993	+	690.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007998, intron 6 of 10)	intron (NM_007998, intron 6 of 10)	22205.0	NM_007998	14151.0	Mm.1070	NM_007998	ENSMUSG00000024588	Fech	AI894116|Fcl|fch	ferrochelatase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107642979-1	chr9	107642879	107643079	+	552.0	f1_c57bl6.idr	Intergenic	B3|SINE|B2	-7637.0	NM_008138	14678.0	Mm.196464	NM_008138	ENSMUSG00000032562	Gnai2	C76432|Galphai2|Gia|Gnai-2	guanine nucleotide binding protein (G protein), alpha inhibiting 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-108932310-2	chr12	108932210	108932410	+	864.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_177602, intron 2 of 6)	intron (NM_177602, intron 2 of 6)	38038.0	NM_177602	212198.0	Mm.342082	NM_177602	ENSMUSG00000040877	Wdr25	B930090D16Rik	WD repeat domain 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-94311469-2	chr8	94311369	94311569	+	573.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357268, intron 18 of 20)	intron (NM_001357268, intron 18 of 20)	-12842.0	NR_029552	723956.0		NR_029552	ENSMUSG00000065512	Mir138-2	Mirn138-2|mir-138-2	microRNA 138-2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-14012568-4	chr14	14012491	14012691	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_139227)	promoter-TSS (NM_139227)	100.0	NM_139227	246103.0	Mm.133625	NM_139227	ENSMUSG00000021738	Atxn7	A430107N12Rik|AI627028|Sca7|ataxin-7	ataxin 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180863839-3	chr1	180863747	180863947	+	741.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145943, intron 6 of 6)	intron (NM_145943, intron 6 of 6)	12696.0	NM_145943	208768.0	Mm.272625	NM_145943	ENSMUSG00000038806	Sde2	-	SDE2 telomere maintenance homolog (S. pombe)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-32788032-3	chr17	32787916	32788116	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346705)	promoter-TSS (NM_001346705)	271.0	NM_172458	208292.0	Mm.38813	NM_172458	ENSMUSG00000024298	Zfp871	4732483N19|9030612M13Rik|AI118577|AI265322|mKIAA3006	zinc finger protein 871	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46644402-2	chr19	46644311	46644511	+	718.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_001177812, exon 3 of 5)	exon (NM_001177812, exon 3 of 5)	21010.0	NM_001177813	226178.0	Mm.329895	NM_146099	ENSMUSG00000047731	Wbp1l	D19Wsu162e|Opal1	WW domain binding protein 1 like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-30645816-4	chr13	30645736	30645936	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M3|LINE|L1	-14223.0	NM_001037955	105352.0	Mm.289646	NM_134068	ENSMUSG00000069255	Dusp22	JKAP|JSP1|LMW-DSP2|MKPX	dual specificity phosphatase 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-92958574-2	chr16	92958474	92958674	+	859.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-132500.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141789000-1	chr4	141788900	141789100	+	949.0	f1_c57bl6.idr	exon (NM_172338, exon 2 of 15)	exon (NM_172338, exon 2 of 15)	1644.0	NM_172338	214063.0	Mm.39102	NM_172338	ENSMUSG00000040697	Dnajc16	2900037O03Rik|4732437J24Rik|D030060M24|mKIAA0962	DnaJ heat shock protein family (Hsp40) member C16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-126929011-2	chr8	126928911	126929111	+	727.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	16910.0	NM_024214	67952.0	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140636875-4	chr5	140636772	140636972	+	815.049988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001308040, intron 1 of 12)	intron (NM_001308040, intron 1 of 12)	12159.0	NM_001308040	78339.0	Mm.28947	NM_175274	ENSMUSG00000036565	Ttyh3	2900029G13Rik|AI414930|TTY3|mTTY3	tweety family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-104550607-4	chr11	104550526	104550726	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285990)	promoter-TSS (NM_001285990)	-6.0	NM_001285988	217232.0	Mm.89845	NM_145436	ENSMUSG00000020687	Cdc27	AI452358|APC3|BC023187	cell division cycle 27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-19691084-1	chr13	19690984	19691184	+	709.0	f1_c57bl6.idr	intron (NM_001167909, intron 5 of 14)	intron (NM_001167909, intron 5 of 14)	6676.0	NM_001167909	73412.0	Mm.279939	NM_181591	ENSMUSG00000041138	Nme8	1700056P15Rik|Sptrx-2|Txndc3	NME/NM23 family member 8	protein-coding	-0.161128716517695	-0.883036795930771	-0.890611598625965	-0.893061778427922	-0.744085630581921	-0.880233907459775	-0.889911326547133	-0.892633676848341	-2.19211081861067	0.468800837409772	1
Merged-chr1-37428097-2	chr1	37427993	37428193	+	597.5	f0_balb.idr|f0_c57.idr	intron (NM_198006, intron 2 of 2)	intron (NM_198006, intron 2 of 2)	2010.0	NM_198006	76178.0	Mm.28085	NM_198006	ENSMUSG00000026112	Coa5	1700001A24Rik|6330578E17Rik|Pet191	cytochrome C oxidase assembly factor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-88828190-4	chr6	88828106	88828306	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011844, exon 8 of 8)	3' UTR (NM_011844, exon 8 of 8)	13729.0	NM_001362152	80283.0	Mm.166858	NM_030251	ENSMUSG00000030083	Abtb1	AI847549|BC003234|BPOZ|EF1ABP	ankyrin repeat and BTB (POZ) domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-170317005-4	chr2	170316895	170317095	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39366.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-146482560-2	chr4	146482460	146482660	+	737.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19440.0	NM_001243138	100041433.0	Mm.441741	NM_001243138	ENSMUSG00000056300	Zfp981	Gm13247	zinc finger protein 981	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-61113943-1	chr18	61113843	61114043	+	578.0	f1_c57bl6.idr	intron (NM_001037859, intron 6 of 21)	intron (NM_001037859, intron 6 of 21)	-3525.0	NR_105949	102466212.0		NR_105949	ENSMUSG00000098389	Mir6983	Gm27496|mmu-mir-6983	microRNA 6983	ncRNA	0.23699540090903	0.470120699014951	0.784794600649436	0.0980113887265659	0.0912917556704506	0.110272892266667	0.693190501264657	0.0988407944651761	-0.969143881417126	0.635450084697141	1
Merged-chr15-81083494-4	chr15	81083384	81083584	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001082536, intron 2 of 13)	intron (NM_001082536, intron 2 of 13)	21563.0	NM_153049	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-89383131-3	chr13	89383078	89383278	+	849.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13B|LTR|ERVK	-157458.0	NM_013500	12950.0	Mm.266790	NM_013500	ENSMUSG00000021613	Hapln1	BB099155|CLP|Crtl1|Crtl1l|LP|LP-1	hyaluronan and proteoglycan link protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-62494944-4	chr11	62494843	62495043	+	965.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039536, intron 2 of 6)	intron (NM_001039536, intron 2 of 6)	36483.0	NM_001039536	327942.0	Mm.390358	NM_199026	ENSMUSG00000014245	Pigl	Gm737	phosphatidylinositol glycan anchor biosynthesis, class L	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-63544751-4	chr4	63544632	63544832	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024173)	promoter-TSS (NM_024173)	-33.0	NM_024173	66290.0	Mm.371615	NM_024173	ENSMUSG00000039105	Atp6v1g1	1810024D14Rik|AA960677|ATP6J|Atp6g1|VAG1|Vma10	ATPase, H+ transporting, lysosomal V1 subunit G1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-85393232-3	chr17	85393128	85393328	+	755.133301	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028576, intron 4 of 10)	intron (NM_028576, intron 4 of 10)	225168.0	NR_038084	100043902.0	Mm.150838	NR_015385	ENSMUSG00000093460	Six3os1	D17Mgi26|E130112H22Rik|Rncr1|Six3os	SIX homeobox 3, opposite strand 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-75659099-4	chr2	75658999	75659199	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198090)	promoter-TSS (NM_198090)	-160.0	NM_146130	229279.0	Mm.316306	NM_053263	ENSMUSG00000059005	Hnrnpa3	2410013L13Rik|2610209F03Rik|2610510D13Rik|Hnrpa3	heterogeneous nuclear ribonucleoprotein A3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-8686841-2	chr16	8686741	8686941	+	682.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6071.0	NM_001324517	436336.0	Mm.357666	NM_001324517		Gm5767	EG436336|Gm43786	predicted gene 5767	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-4803458-4	chr18	4803305	4803505	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9081.0	NR_045881	100038439.0	Mm.387569	NR_045881	ENSMUSG00000097043	Gm10556	-	predicted gene 10556	ncRNA	2.38255398382642	2.90034057727435	2.7889744302519	3.75732813598504	3.65657487786803	3.88310232306555	5.13623230894576	3.56277639246586	1.68911406423392	0.00555365366625197	0.0723220731053087
Merged-chr5-146807906-3	chr5	146807791	146807991	+	876.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1A|DNA|hAT-Charlie	-12935.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	3.15382568866988	3.25921562299188	2.97259984025924	4.01589238177232	2.04806097233655	1.67458551831014	1.29883312489909	1.25016261108543	-3.79790523587659	3.40601186861406e-05	0.00128507328300728
Merged-chr11-53609483-2	chr11	53609383	53609583	+	880.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7855.0	NR_027491	16189.0	Mm.276360	NM_021283	ENSMUSG00000000869	Il4	BSF-1|Il-4	interleukin 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-144603753-1	chr3	144603653	144603853	+	677.333313	f0_balb.idr	Intergenic	Intergenic	33326.0	NM_053102	93684.0	Mm.29812	NM_053102	ENSMUSG00000037072	Selenof	9430015P09Rik|Sep15	selenoprotein F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-29970736-1	chr14	29970636	29970836	+	642.0	f0_balb.idr	intron (NM_019979, intron 2 of 4)	MTC|LTR|ERVL-MaLR	2356.0	NM_019979	80795.0	Mm.104491	NM_019979	ENSMUSG00000042682	Selenok	1110001C03Rik|AA673253|HSPC030|Hsp30|Selk	selenoprotein K	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-119204920-1	chr4	119204820	119205020	+	541.0	f0_c57.idr	TTS (NM_029198)	TTS (NM_029198)	9395.0	NM_001038998	69216.0	Mm.36697	NM_024462	ENSMUSG00000028643	Svbp	2410005K17Rik|AI851162|Ccdc23	small vasohibin binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70515419-2	chr8	70515319	70515519	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_029366, exon 4 of 5)	exon (NM_029366, exon 4 of 5)	4933.0	NR_151735	78183.0	Mm.297372	NR_151735		4930522P08Rik	-	RIKEN cDNA 4930522P08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71364351-4	chr8	71364325	71364525	+	830.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6A|LTR|ERVK	-2423.0	NM_001145780	67023.0	Mm.41890	NM_025917	ENSMUSG00000002395	Use1	2010315L10Rik|5730403H22Rik|AV002165|D12|Ed2|Q-snare|p31	unconventional SNARE in the ER 1 homolog (S. cerevisiae)	protein-coding	3.12625695058727	2.8473701712306	3.30028092969801	3.11834729333174	3.30015857846243	3.24034957085222	4.04127359552091	3.03635087681063	0.582423540068178	0.323959075029728	0.826452445967124
Merged-chr7-35555422-4	chr7	35555297	35555497	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_033080, exon 1 of 3)	exon (NM_033080, exon 1 of 3)	531.0	NM_033080	110959.0	Mm.410206	NM_033080	ENSMUSG00000034875	Nudt19	D7Rp2|D7Rp2-r|D7Rp2-s|D7Rp2e|RP2-r|RP2-s	nudix (nucleoside diphosphate linked moiety X)-type motif 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-126131928-4	chr4	126131887	126132087	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028800, intron 6 of 10)	intron (NM_028800, intron 6 of 10)	-16016.0	NM_172145	230752.0	Mm.41569	NM_172145	ENSMUSG00000050212	Eva1b	2610027C15Rik|Fam176b	eva-1 homolog B (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-61453399-2	chr18	61453299	61453499	+	898.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31208.0	NR_045419	442846.0	Mm.417648	NR_045419		A530050N04Rik	-	RIKEN cDNA A530050N04 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-32487588-3	chr9	32487514	32487714	+	727.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008026, intron 1 of 8)	intron (NM_008026, intron 1 of 8)	53838.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-116177619-2	chr4	116177519	116177719	+	853.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4247.0	NM_001099295	67323.0	Mm.45442	NM_001099295	ENSMUSG00000078593	1700042G07Rik	-	RIKEN cDNA 1700042G07 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-15715195-4	chr6	15715091	15715291	+	963.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVB4_1B-I_MM-int|LTR|ERVK	-5470.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-31945293-2	chr16	31945193	31945393	+	968.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_172822, exon 3 of 3)	exon (NM_172822, exon 3 of 3)	3228.0	NR_027897	106264.0	Mm.347369	NM_025320	ENSMUSG00000107002	0610012G03Rik	AI839730	RIKEN cDNA 0610012G03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-84849551-2	chr18	84849451	84849651	+	990.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MD2|LINE|L1	-1787.0	NM_025797	109672.0	Mm.31018	NM_025797	ENSMUSG00000024646	Cyb5a	0610009N12Rik|Cyb5	cytochrome b5 type A (microsomal)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-83397493-3	chr17	83397390	83397590	+	937.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357886, intron 1 of 21)	intron (NM_001357886, intron 1 of 21)	46559.0	NM_001357886	78798.0	Mm.295565	NM_199466	ENSMUSG00000032624	Eml4	4930443C24Rik|AI644019	echinoderm microtubule associated protein like 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-84977063-3	chr4	84976963	84977163	+	899.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175275, intron 7 of 25)	Lx8b|LINE|L1	92754.0	NM_177385	338349.0	Mm.440562	NM_175275	ENSMUSG00000038070	Cntln	AI448092|B430108F07Rik|D530005L17Rik	centlein, centrosomal protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-85160412-4	chr6	85160312	85160512	+	805.950012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22648.0	NM_011467	20751.0	Mm.28393	NM_011467	ENSMUSG00000033735	Spr	AA409688|Gm10328	sepiapterin reductase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-84252979-2	chr12	84252879	84253079	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16E2|LTR|ERVL	-32317.0	NM_029880	77219.0	Mm.246127	NM_029880	ENSMUSG00000072946	Ptgr2	1810016I24Rik|9130222H03Rik|9630002F03Rik|AI838763|B830026H24Rik|PGR-2|PRG-2|Zadh1	prostaglandin reductase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-49494127-2	chr9	49494027	49494227	+	892.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7902.0	NM_172770	235330.0	Mm.177413	NM_172770	ENSMUSG00000040219	Ttc12	E330017O07Rik	tetratricopeptide repeat domain 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-99280111-2	chr11	99280011	99280211	+	718.583374	f1_balb.idr|f1_c57bl6.idr	TTS (NM_029393)	TTS (NM_029393)	5127.0	NM_029393	75706.0	Mm.46378	NM_029393	ENSMUSG00000020913	Krt24	2310058N18Rik|2310075C18Rik	keratin 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-82535895-2	chr11	82535795	82535995	+	714.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-97458.0	NR_033582	791422.0	Mm.341562	NR_033582	ENSMUSG00000069796	Gm11426	-	predicted gene 11426	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-88245619-2	chr1	88245519	88245719	+	854.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001281466, intron 23 of 41)	intron (NM_001281466, intron 23 of 41)	18599.0	NM_001281466	100040766.0	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	Heatr7b1	maestro heat-like repeat family member 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-82016268-4	chr15	82016164	82016364	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134095)	promoter-TSS (NM_134095)	-44.0	NM_001356541	28075.0	Mm.474453	NM_134095	ENSMUSG00000022472	Desi1	AI427858|AI850401|D15Wsu75e|DeSI-1|Fam152b|Pppde2	desumoylating isopeptidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-142498446-2	chr3	142498346	142498546	+	632.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_153564, intron 1 of 10)	(TATATG)n|Simple_repeat|Simple_repeat	1512.0	NM_153564	229898.0	Mm.459245	NM_153564	ENSMUSG00000105504	Gbp5	5330409J06Rik|Gbp5a	guanylate binding protein 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-42308193-2	chr10	42308093	42308293	+	585.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31451.0	NM_019740	56484.0	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-124802509-4	chr4	124802424	124802624	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008636)	promoter-TSS (NM_008636)	-25.0	NM_008636	17764.0	Mm.272397	NM_008636	ENSMUSG00000028890	Mtf1	MTF-1|Thyls	metal response element binding transcription factor 1	protein-coding	3.09951979493812	2.59508328160076	3.73720591249159	3.46616142119718	2.79231345015388	3.02076765803397	2.67225802170004	2.58842138701733	-0.91650664327882	0.157920175045611	0.615304046394426
Merged-chr16-30262961-3	chr16	30262879	30263079	+	901.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027904, intron 1 of 1)	intron (NM_027904, intron 1 of 1)	4553.0	NM_027904	71756.0	Mm.290614	NM_027904	ENSMUSG00000023176	Cpn2	1300018K11Rik	carboxypeptidase N, polypeptide 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-61944352-2	chr11	61944252	61944452	+	727.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1|SINE|Alu	-12411.0	NM_001281818	432572.0	Mm.438022	NM_001029936	ENSMUSG00000042331	Specc1	2810012G08Rik|B230396K10Rik|Cytsb	sperm antigen with calponin homology and coiled-coil domains 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-93714657-2	chr16	93714557	93714757	+	786.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027293, intron 1 of 36)	intron (NM_027293, intron 1 of 36)	2750.0	NM_027293	70028.0	Mm.23230	NM_026700	ENSMUSG00000022946	Dopey2	0610038M01Rik|2610510B01Rik|AI503246|C21orf5|mKIAA0933	dopey family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-18172664-2	chr16	18172564	18172764	+	680.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7494.0	NR_105785	102465189.0		NR_105785	ENSMUSG00000099293	Mir6366	Gm27720|mmu-mir-6366	microRNA 6366	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-101290393-2	chr15	101290293	101290493	+	641.666626	f1_balb.idr|f1_c57bl6.idr	exon (NM_026566, exon 3 of 3)	exon (NM_026566, exon 3 of 3)	-2819.0	NR_033803	77717.0	Mm.391998	NR_033803	ENSMUSG00000075408	6030408B16Rik	AI225877	RIKEN cDNA 6030408B16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69035419-2	chr11	69035319	69035519	+	584.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001281465, intron 20 of 22)	intron (NM_001281465, intron 20 of 22)	-10218.0	NM_011496	20877.0	Mm.3488	NM_011496	ENSMUSG00000020897	Aurkb	AIM-1|AIRK2|AL022959|Aik2|Aim1|Ark2|AurB|IPL1|STK-1|Stk12|Stk5	aurora kinase B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55900804-2	chr19	55900704	55900904	+	581.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001142924, intron 1 of 11)	intron (NM_001142924, intron 1 of 11)	5483.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129783021-4	chr4	129782942	129783142	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR33|LTR|ERVL	-37437.0	NM_008974	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	1.01221245179626	0.211248959472895	0.204133574120293	0.198617512519048	0.792618743918841	0.212847775900397	0.205706165145152	0.766891040196676	0.31149783039891	0.881107911989632	1
Merged-chr7-116597118-4	chr7	116597018	116597218	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	92749.0	NM_001360375	53322.0	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-19451189-1	chr3	19451089	19451289	+	902.5	f0_balb.idr	Intergenic	Intergenic	-57406.0	NM_001163536	66326.0	Mm.45615	NM_025489	ENSMUSG00000027606	Dnajc5b	1700008A05Rik	DnaJ heat shock protein family (Hsp40) member C5 beta	protein-coding	1.68819171071561	1.63299189969049	1.18491586855457	1.79451220488969	1.44604244682152	0.957645157007634	0.932782948911943	2.82817582958865	0.651475385525953	0.59483967428698	0.971009057416876
Merged-chr17-80727632-4	chr17	80727566	80727766	+	951.229126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360278, intron 1 of 33)	CpG	359.0	NM_001360278	225028.0	Mm.311948	NM_001081357	ENSMUSG00000024242	Map4k3	4833416M01Rik|4833416M07Rik|9530052P13Rik|Glk|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1	mitogen-activated protein kinase kinase kinase kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-26361903-4	chr15	26361814	26362014	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310774, intron 2 of 2)	intron (NM_001310774, intron 2 of 2)	52866.0	NM_001310774	211147.0	Mm.54257	NM_177597	ENSMUSG00000022269	March11	9630025C22	membrane-associated ring finger (C3HC4) 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-117628919-2	chr12	117628819	117629019	+	635.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175930, intron 9 of 27)	MER5A|DNA|hAT-Charlie	112440.0	NM_175930	217944.0	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-132097263-2	chr4	132097163	132097363	+	578.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21950.0	NM_001128607	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-153260797-4	chr3	153260710	153260910	+	940.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011372, intron 3 of 4)	intron (NM_011372, intron 3 of 4)	37839.0	NR_126464	75489.0	Mm.443252	NR_126464	ENSMUSG00000105023	1700012D16Rik	-	RIKEN cDNA 1700012D16 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36784809-3	chr1	36784743	36784943	+	872.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5859.0	NM_001289612	22637.0	Mm.8038	NM_009539	ENSMUSG00000026117	Zap70	Srk|ZAP-70|mrtle|mur	zeta-chain (TCR) associated protein kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-106804429-4	chr4	106804323	106804523	+	940.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347159, intron 1 of 15)	intron (NM_001347159, intron 1 of 15)	584.0	NM_001347159	329910.0	Mm.222956	NM_025590	ENSMUSG00000034853	Acot11	1110020M10Rik|2010309H15Rik|AW060409|BFIT|BFIT1|Thea|Them1|mKIAA0707	acyl-CoA thioesterase 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-42879800-3	chr4	42879697	42879897	+	998.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4|LINE|L1	-5563.0	NM_177785	277773.0	Mm.212727	NM_177785	ENSMUSG00000050141	Fam205c	4931430D02|FAM205CP	family with sequence similarity 205, member C	protein-coding	1.52739427331674	2.46140269116286	1.65320968444879	1.73951821653666	1.39847858303364	1.870340807384	1.50509496124117	1.28252755855166	-1.15069805684115	0.27928140165475	0.782657643347949
Merged-chr5-43867410-4	chr5	43867295	43867495	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3B|LINE|L1	-1414.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	4.92879135737116	5.49344685348487	6.02545390210713	5.96596782209869	5.81388289012679	5.19993332402344	5.40067878944475	5.99011181748935	-0.0241453322002889	0.937818184369036	0.998431161219273
Merged-chr9-99496019-1	chr9	99495919	99496119	+	581.0	f0_balb.idr	intron (NM_028768, intron 18 of 21)	intron (NM_028768, intron 18 of 21)	25598.0	NR_028123	69797.0	Mm.307159	NR_028123	ENSMUSG00000046242	1600029I14Rik	-	RIKEN cDNA 1600029I14 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128312271-4	chr2	128312185	128312385	+	895.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028589, intron 2 of 2)	intron (NR_028589, intron 2 of 2)	117066.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-93858183-2	chr4	93858083	93858283	+	558.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-522672.0	NM_026954	69136.0	Mm.171558	NM_026954	ENSMUSG00000054000	Tusc1	2200001D17Rik|TSG-9	tumor suppressor candidate 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-105508615-3	chr10	105508563	105508763	+	841.744446	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177368, intron 1 of 11)	intron (NM_177368, intron 1 of 11)	65816.0	NM_177368	278279.0	Mm.25225	NM_177368	ENSMUSG00000036019	Tmtc2	8430438D04Rik|D330034A10Rik	transmembrane and tetratricopeptide repeat containing 2	protein-coding	-0.961808289013217	-0.941143281918953	-0.953353259954851	-0.9565109400711	-0.961015840561242	-0.938024035002784	0.030272756003758	-0.955957512668286	3.38343409954699	0.275427317743097	1
Merged-chr3-27233854-4	chr3	27233723	27233923	+	878.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 3 of 4)	intron (NM_178772, intron 3 of 4)	50819.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-71851938-1	chr11	71851838	71852038	+	543.0	f1_c57bl6.idr	Intergenic	Intergenic	88184.0	NR_045942	73816.0	Mm.390391	NR_045942	ENSMUSG00000085528	4930401O10Rik	-	RIKEN cDNA 4930401O10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-60500863-2	chr17	60500754	60500954	+	567.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-1487532.0	NM_026497	67993.0	Mm.36507	NM_026497	ENSMUSG00000024228	Nudt12	0610016O18Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3510827-4	chr4	3510724	3510924	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26266.0	NR_037306	100499523.0		NR_037306	ENSMUSG00000094253	Mir3471-2	mmu-mir-3471-2	microRNA 3471-2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-23809106-2	chr17	23809006	23809206	+	690.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175229, intron 3 of 13)	B1_Mus2|SINE|Alu	5919.0	NM_175229	75956.0	Mm.5222	NM_175229	ENSMUSG00000039218	Srrm2	5033413A03Rik|AA410130|SRm300|mKIAA0324	serine/arginine repetitive matrix 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5639258-2	chr19	5639158	5639358	+	596.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009045, intron 4 of 10)	intron (NM_009045, intron 4 of 10)	1768.0	NM_009045	19697.0	Mm.249966	NM_009045	ENSMUSG00000024927	Rela	p65	v-rel reticuloendotheliosis viral oncogene homolog A (avian)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-60200864-2	chr2	60200764	60200964	+	860.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-9072.0	NM_020575	57438.0	Mm.260635	NM_020575	ENSMUSG00000026977	March7	Axo|Axot|Gtrgeo17	membrane-associated ring finger (C3HC4) 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-9570714-2	chr5	9570614	9570814	+	792.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_181850, exon 3 of 6)	exon (NM_181850, exon 3 of 6)	154638.0	NM_181850	108069.0	Mm.318966	NM_181850	ENSMUSG00000003974	Grm3	0710001G23Rik|Gprc1c|mGlu3|mGluR3	glutamate receptor, metabotropic 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-83055073-4	chr8	83054943	83055143	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177378, intron 6 of 6)	intron (NM_177378, intron 6 of 6)	-110309.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	1.95482189843608	2.22333360813357	1.01446164045336	1.97104658826446	1.36314134220262	2.51658520057379	1.02000898370744	1.23709535074226	-0.432446748218666	0.718587048131715	0.998431161219273
Merged-chr2-144237522-4	chr2	144237459	144237659	+	878.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	28643.0	NR_030762	100313519.0	Mm.453538	NR_030762	ENSMUSG00000077714	Snord17	MBI-43	small nucleolar RNA, C/D box 17	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-55794063-4	chr14	55793952	55794152	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5195.0	NM_001164108	56532.0	Mm.46612	NM_019955	ENSMUSG00000022221	Ripk3	2610528K09Rik|AW107945|Rip3	receptor-interacting serine-threonine kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-41848295-4	chr19	41848204	41848404	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177603)	promoter-TSS (NM_177603)	-172.0	NM_177603	212398.0	Mm.222723	NM_177603	ENSMUSG00000047604	Frat2	-	frequently rearranged in advanced T cell lymphomas 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-122148730-4	chr2	122148636	122148836	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009735, intron 1 of 3)	intron (NM_009735, intron 1 of 3)	1049.0	NM_009735	12010.0	Mm.163	NM_009735	ENSMUSG00000060802	B2m	Ly-m11|beta2-m|beta2m	beta-2 microglobulin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-155514860-2	chr2	155514757	155514957	+	648.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_144786)	promoter-TSS (NM_144786)	-11.0	NM_144786	207182.0	Mm.41757	NM_144786	ENSMUSG00000027603	Ggt7	1110017C11Rik|6330563L03Rik|Ggtl3	gamma-glutamyltransferase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-117984777-3	chr2	117984675	117984875	+	974.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_126479, intron 8 of 9)	intron (NR_126479, intron 8 of 9)	126427.0	NR_126479	329496.0	Mm.235844	NR_126479	ENSMUSG00000087203	Gm13986	C230060E24	predicted gene 13986	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-52491440-3	chr6	52491373	52491573	+	941.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_046049)	promoter-TSS (NR_046049)	-978.0	NR_046049	74304.0	Mm.490579	NR_046049	ENSMUSG00000107895	1700094M24Rik	-	RIKEN cDNA 1700094M24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-53993511-3	chr6	53993414	53993614	+	778.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110484, intron 1 of 3)	intron (NR_110484, intron 1 of 3)	14823.0	NR_110484	320178.0	Mm.320413	NR_110484	ENSMUSG00000108060	4921529L05Rik	4930590G02Rik	RIKEN cDNA 4921529L05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-48886212-4	chr2	48886127	48886327	+	629.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007396, intron 4 of 10)	intron (NM_007396, intron 4 of 10)	63040.0	NM_001177313	26428.0	Mm.291059	NM_011958	ENSMUSG00000026761	Orc4	Orc4P|Orc4l|mMmORC4	origin recognition complex, subunit 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-110434963-3	chr5	110434856	110435056	+	658.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001317042, intron 1 of 2)	intron (NM_001317042, intron 1 of 2)	13547.0	NM_001317042	381668.0	Mm.348782	NM_028596	ENSMUSG00000043323	Fbrsl1	2410025L10Rik|AI467568|Gm1049|Gm29766|mKIAA1545	fibrosin-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-62980426-1	chr9	62980326	62980526	+	1000.0	f0_c57.idr	intron (NM_019663, intron 1 of 13)	CpG	453.0	NM_019663	56469.0	Mm.431253	NM_019663	ENSMUSG00000032405	Pias1	2900068C24Rik|Ddxbp1|GBP	protein inhibitor of activated STAT 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-66176971-1	chr14	66176871	66177071	+	624.0	f1_balb.idr	intron (NM_001162366, intron 10 of 30)	intron (NM_001162366, intron 10 of 30)	36011.0	NM_144803	110902.0	Mm.57350	NM_144803	ENSMUSG00000022041	Chrna2	Acra-2|Acra2|BC011490	cholinergic receptor, nicotinic, alpha polypeptide 2 (neuronal)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-123130320-2	chr7	123130220	123130420	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144925, intron 2 of 23)	intron (NM_144925, intron 2 of 23)	6435.0	NM_144925	233833.0	Mm.102305	NM_144925	ENSMUSG00000052707	Tnrc6a	2010321I05Rik|3110054G10Rik|AW557223|CAGH26|D130023A07Rik|GW182|Tnrc6	trinucleotide repeat containing 6a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-81325271-2	chr16	81325171	81325371	+	757.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113208, intron 1 of 17)	B3A|SINE|B2	124574.0	NM_010954	17968.0	Mm.433941	NM_010954	ENSMUSG00000022762	Ncam2	Ncam-2|Ocam|RNCAM	neural cell adhesion molecule 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-103208027-4	chr9	103207936	103208136	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_133977)	TTS (NM_133977)	-5971.0	NM_009275	20818.0	Mm.273053	NM_009275	ENSMUSG00000032553	Srprb	AA409543	signal recognition particle receptor, B subunit	protein-coding	3.75438168250738	3.49206845557993	3.15124783323445	3.61802679005284	3.78460199920296	3.8770479009362	3.49600713979194	4.81730200292282	0.819965489321302	0.115510875029346	0.532628546734085
Merged-chr6-72407336-4	chr6	72407238	72407438	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-6970.0	NM_019802	56316.0	Mm.19937	NM_019802	ENSMUSG00000053460	Ggcx	-	gamma-glutamyl carboxylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-180568913-4	chr1	180568805	180569005	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007415)	promoter-TSS (NM_007415)	14.0	NM_007415	11545.0	Mm.277779	NM_007415	ENSMUSG00000026496	Parp1	5830444G22Rik|AI893648|ARTD1|Adprp|Adprt1|C80510|PARP|PPOL|msPARP|parp-1|sPARP-1	poly (ADP-ribose) polymerase family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-96914793-3	chr5	96914695	96914895	+	933.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6477.0	NR_131152	666266.0	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	3.70271644910829	2.85573958505127	2.54572857085113	3.07726256402317	4.67957035695242	5.37240418005869	6.03170303316196	4.71011603231174	2.80642619190423	1.00408227357725e-08	1.22928358350815e-06
Merged-chr6-113620234-2	chr6	113620134	113620334	+	615.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-3787.0	NM_009507	22346.0	Mm.29407	NM_009507	ENSMUSG00000033933	Vhl	Vhlh	von Hippel-Lindau tumor suppressor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-134782879-1	chr1	134782779	134782979	+	560.0	f0_balb.idr	intron (NM_001081307, intron 18 of 23)	intron (NM_001081307, intron 18 of 23)	20842.0	NR_015606	329251.0	Mm.188709	NM_001081307	ENSMUSG00000073557	Ppp1r12b	1810037O03Rik|9530009M10Rik|AI132431|Mypt2	protein phosphatase 1, regulatory (inhibitor) subunit 12B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-57627720-2	chr16	57627620	57627820	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_007739, exon 4 of 4)	exon (NM_007739, exon 4 of 4)	-20853.0	NM_025599	66497.0	Mm.425976	NM_025599	ENSMUSG00000022748	Cmss1	1110001A06Rik|2610528E23Rik|4930572F24Rik|AV099812|AV122629	cms small ribosomal subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-173802056-1	chr1	173801956	173802156	+	780.666687	f1_balb.idr	Intergenic	Intergenic	-35137.0	NM_008329	15951.0	Mm.261270	NM_008329	ENSMUSG00000073489	Ifi204	Ifi16|p204	interferon activated gene 204	protein-coding	0.651783588052203	0.739736911786194	0.50257696750483	0.493798484300118	1.04785694696838	0.933683751659857	0.71783629143525	1.7171365270229	3.18261739104753	0.0503143284690146	0.326880198969073
Merged-chr7-98914195-1	chr7	98914095	98914295	+	615.0	f1_c57bl6.idr	intron (NM_178635, intron 13 of 14)	intron (NM_178635, intron 13 of 14)	75350.0	NM_001285795	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	-1.06932346315282	-1.04545378193536	-0.220844647149311	-1.06494782147003	-1.06867040657128	-1.04264807175102	-1.05547001227371	-1.06448932552894	-3.08190232315036	0.346744811462451	1
Merged-chr11-87771242-2	chr11	87771100	87771300	+	920.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_172449, intron 14 of 31)	intron (NM_172449, intron 14 of 31)	10659.0	NM_172449	207777.0	Mm.342019	NM_172449	ENSMUSG00000034156	Tspoap1	Bzrap1|D230016K05|PRAX-1|mKIAA0612	TSPO associated protein 1	protein-coding	-1.33664238024077	-1.30732081564108	-1.31725863230831	-1.3254218508089	-0.952244101754967	-1.3051672493127	-1.31500892844558	-1.16759341372862	2.25470230303775	0.506155757978017	1
Merged-chr2-180225404-2	chr2	180225304	180225504	+	793.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081171, intron 1 of 78)	CpG	455.0	NM_001081171	16776.0	Mm.4339	NM_001081171	ENSMUSG00000015647	Lama5	AA408760|AA408762|AI853660|[a]5|laminin-511|mKIAA0533	laminin, alpha 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-103919533-3	chr8	103919440	103919640	+	761.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-182085.0	NM_009868	12562.0	Mm.21767	NM_009868	ENSMUSG00000031871	Cdh5	7B4|AA408225|Cd144|VE-Cad|VECD|VEcad|Vec	cadherin 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-103182115-2	chr9	103182015	103182215	+	660.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_173781, exon 8 of 8)	3' UTR (NM_173781, exon 8 of 8)	19950.0	NM_009275	20818.0	Mm.273053	NM_009275	ENSMUSG00000032553	Srprb	AA409543	signal recognition particle receptor, B subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-25664783-2	chr14	25664683	25664883	+	587.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001310666, exon 24 of 24)	3' UTR (NM_001310666, exon 24 of 24)	-29387.0	NM_134084	105675.0	Mm.41656	NM_134084	ENSMUSG00000021868	Ppif	AW457192|CyP-D|CyP-F|CypD|PPIase	peptidylprolyl isomerase F (cyclophilin F)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118226176-2	chr11	118226076	118226276	+	710.041626	f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	-13434.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-115360817-2	chr10	115360717	115360917	+	580.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359472, intron 2 of 6)	PB1D7|SINE|Alu	1432.0	NM_001359470	67226.0	Mm.29647	NM_133683	ENSMUSG00000069520	Tmem19	2810428F02Rik|AW125171	transmembrane protein 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-151818826-2	chr1	151818726	151818926	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001311166, exon 20 of 20)	3' UTR (NM_001311166, exon 20 of 20)	63452.0	NM_001311166	66967.0	Mm.337691	NM_001039644	ENSMUSG00000043019	Edem3	2310050N11Rik	ER degradation enhancer, mannosidase alpha-like 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-134305275-3	chr1	134305192	134305392	+	851.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001144855, intron 23 of 28)	intron (NM_001144855, intron 23 of 28)	15288.0	NM_031189	17928.0	Mm.16528	NM_031189	ENSMUSG00000026459	Myog	MYF4|bHLHc3|myo	myogenin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-95712170-4	chr11	95712024	95712224	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045780, intron 1 of 1)	intron (NR_045780, intron 1 of 1)	630.0	NR_045780	432396.0	Mm.426849	NR_045780	ENSMUSG00000086191	Zfp652os	1110035M17Rik	zinc finger protein 652, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-134686934-2	chr5	134686834	134687034	+	609.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010717, intron 1 of 15)	intron (NM_010717, intron 1 of 15)	1656.0	NM_010717	16885.0	Mm.15409	NM_010717	ENSMUSG00000029674	Limk1	KIZ-1|LIMK-1|Limk	LIM-domain containing, protein kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-74439696-4	chr1	74439601	74439801	+	975.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176972, intron 25 of 25)	intron (NM_176972, intron 25 of 25)	30317.0	NM_009509	22349.0	Mm.471601	NM_009509	ENSMUSG00000026175	Vil1	Vil	villin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-29528038-8	chr6	29527967	29528167	+	985.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311083, intron 1 of 9)	intron (NM_001311083, intron 1 of 9)	-1215.0	NM_001252382	27056.0	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-50438667-1	chr17	50438567	50438767	+	1000.0	f0_balb.idr	Intergenic	Intergenic	-70880.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	-0.0430630089746512	-0.305357550816239	-0.310102676949913	-0.313769877909646	0.567208767042139	-0.304289149223035	-0.121271971925828	-0.313128827818255	2.21931456932134	0.366487142147343	1
Merged-chr5-74628003-4	chr5	74627888	74628088	+	906.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359074, intron 2 of 10)	intron (NM_001359074, intron 2 of 10)	49884.0	NM_001159580	16924.0	Mm.440403	NM_010727	ENSMUSG00000029228	Lnx1	Lnx	ligand of numb-protein X 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32961704-4	chr2	32961601	32961801	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009076)	promoter-TSS (NM_009076)	-11.0	NM_009076	269261.0	Mm.250030	NM_009076	ENSMUSG00000038900	Rpl12	E430018F03	ribosomal protein L12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-90303357-4	chr9	90303246	90303446	+	996.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-32577.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-81341730-2	chr7	81341630	81341830	+	904.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3504.0	NM_009092	20068.0	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-21144824-4	chr19	21144745	21144945	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40135.0	NR_126458	75354.0	Mm.243873	NR_126458		4930554I06Rik	-	RIKEN cDNA 4930554I06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-127789394-2	chr2	127789294	127789494	+	551.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016902)	promoter-TSS (NM_016902)	-503.0	NM_001355429	53885.0	Mm.210766	NM_016902	ENSMUSG00000027378	Nphp1	-	nephronophthisis 1 (juvenile) homolog (human)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52275810-6	chr13	52275687	52275887	+	742.311096	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	179046.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-82622678-4	chr4	82622572	82622772	+	786.391663	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	114683.0	NR_137202	102635783.0	Mm.41666	NR_137202		Gm11266	-	predicted gene 11266	ncRNA	-0.736655525678507	-0.384455770401978	-0.291049161879188	-0.732833993180746	-0.595685376468318	-0.726834310792808	-0.7298595556511	-0.732430616955708	-2.16042917520929	0.434140045012254	1
Merged-chr7-102013599-2	chr7	102013499	102013699	+	791.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_133947, exon 23 of 25)	exon (NM_133947, exon 23 of 25)	4556.0	NM_010531	16068.0	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-42278177-2	chr10	42278078	42278278	+	1000.0	f0_balb.idr|f0_c57.idr	Intergenic	CpG-1005	-1436.0	NM_019740	56484.0	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-95698231-1	chr7	95698131	95698331	+	1000.0	f0_balb.idr	Intergenic	B4A|SINE|B4	-473013.0	NM_001310762	23966.0	Mm.254610	NM_011858	ENSMUSG00000048078	Tenm4	Doc4|ELM2|Odz4|R75022|Ten-m4|l(7)-3Rn|l7Rn3|mKIAA1302	teneurin transmembrane protein 4	protein-coding	0.472533314665165	0.501228391228128	0.684748595291899	1.16407635302353	0.772978466780139	0.503315534892225	0.993859285899672	1.35189880634444	1.0056266968904	0.543750282370843	1
Merged-chr13-24614582-4	chr13	24614511	24614711	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286101)	promoter-TSS (NM_001286101)	5.0	NM_178658	193385.0	Mm.217319	NM_029679	ENSMUSG00000036006	Ripor2	Fam65b	RHO family interacting cell polarization regulator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-112648174-3	chr12	112648038	112648238	+	861.25	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013929, intron 3 of 3)	intron (NM_013929, intron 3 of 3)	3310.0	NM_013929	30954.0	Mm.289812	NM_013929	ENSMUSG00000064326	Siva1	CD27bp|Siva	SIVA1, apoptosis-inducing factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-114818192-4	chr13	114818040	114818240	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013826)	promoter-TSS (NM_013826)	-97.0	NM_013826	17434.0	Mm.19027	NM_013826	ENSMUSG00000015536	Mocs2	AI415403	molybdenum cofactor synthesis 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-141636940-2	chr7	141636840	141637040	+	839.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001330001, intron 31 of 33)	intron (NM_001330001, intron 31 of 33)	16239.0	NR_106030	102466798.0		NR_106030	ENSMUSG00000098759	Mir7063	Gm27654|mmu-mir-7063	microRNA 7063	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-104219372-4	chr7	104219240	104219440	+	796.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013616, intron 1 of 7)	intron (NM_001013616, intron 1 of 7)	545.0	NM_001013616	94088.0	Mm.274843	NM_001013616	ENSMUSG00000072244	Trim6	C430046K18Rik|D7Ertd684e	tripartite motif-containing 6	protein-coding	0.539412974725935	0.873037067966784	0.310097631826847	0.306095711859483	0.545741015577156	0.882905422759511	0.473354463448009	0.306792717825865	0.265849941000527	0.88364153486019	1
Merged-chr8-71476665-5	chr8	71476572	71476772	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001294259)	TTS (NM_001294259)	7478.0	NR_122114	66498.0	Mm.260360	NM_025600	ENSMUSG00000074247	Dda1	1500034J01Rik|1700095J19Rik|R74921	DET1 and DDB1 associated 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-96997510-4	chr5	96997407	96997607	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080708)	promoter-TSS (NM_080708)	-182.0	NM_080708	140780.0	Mm.281490	NM_080708	ENSMUSG00000034663	Bmp2k	4933417M22Rik|AA673486|AV128808|BIKE	BMP2 inducible kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-11425915-3	chr2	11425721	11425921	+	820.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27321.0	NR_040615	77543.0	Mm.490670	NR_040615	ENSMUSG00000102674	8030442B05Rik	-	RIKEN cDNA 8030442B05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-30458355-2	chr14	30458288	30458488	+	887.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_131095, intron 1 of 3)	L2a|LINE|L2	352.0	NR_131095	77710.0	Mm.410773	NR_131095		4831407H17Rik	-	RIKEN cDNA 4831407H17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-25441199-4	chr15	25441113	25441313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027376, intron 1 of 1)	intron (NR_027376, intron 1 of 1)	27021.0	NR_027376	432939.0	Mm.146555	NM_001013791		Gm5468	100040583|EG432939	predicted gene 5468	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-131160146-4	chr2	131160064	131160264	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026091)	promoter-TSS (NM_026091)	-83.0	NM_026091	67326.0	Mm.27711	NM_026091	ENSMUSG00000027327	1700037H04Rik	-	RIKEN cDNA 1700037H04 gene	protein-coding	7.40053100090632	6.97733402627739	6.93313001931429	7.07284320207525	6.54047126913605	6.62046340520193	6.12279941744185	6.81645637929012	-0.598835612975245	0.00252844750270073	0.0398812179720465
Merged-chr18-20750422-3	chr18	20750329	20750529	+	883.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR10_RN|LTR|ERVK	-4025.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-89181926-4	chr15	89181768	89181968	+	876.591675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_027081)	TTS (NM_027081)	-1080.0	NM_138749	140570.0	Mm.267514	NM_138749	ENSMUSG00000036606	Plxnb2	Debt|plexin-B2	plexin B2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84201633-4	chr8	84201495	84201695	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6923.0	NR_029740	387216.0		NR_029740	ENSMUSG00000065611	Mir23a	Mirn23a|mir-23a|mmu-mir-23a	microRNA 23a	ncRNA	3.98025885947275	4.26733241530865	3.13186989000493	3.14979535370365	3.50920611966156	3.84726502614455	4.0544332225893	3.36381507695967	-0.0161549981109633	0.975918839032779	0.998431161219273
Merged-chr11-50226568-2	chr11	50226468	50226668	+	799.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_145926, intron 1 of 14)	intron (NM_145926, intron 1 of 14)	1233.0	NM_145926	103534.0	Mm.86759	NM_145926	ENSMUSG00000036620	Mgat4b	AA407995|GnTIVb	mannoside acetylglucosaminyltransferase 4, isoenzyme B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-148895919-1	chr3	148895819	148896019	+	1000.0	f0_balb.idr	intron (NM_001081298, intron 1 of 23)	intron (NM_001081298, intron 1 of 23)	58716.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	1.69911065743731	2.03844077088982	1.24350236646696	0.997776929186025	1.71411932987995	2.05500717147328	1.98006710251279	1.0006185335832	0.563212479238957	0.642714342798334	0.982823301118608
Merged-chr7-142476993-2	chr7	142476893	142477093	+	562.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271523)	promoter-TSS (NM_001271523)	-20.0	NM_001271523	16985.0	Mm.234003	NM_019391	ENSMUSG00000018819	Lsp1	Lsp-1|WP34|p50|pp52	lymphocyte specific 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-11777403-3	chr11	11777302	11777502	+	924.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31560.0	NM_021891	60530.0	Mm.236114	NM_021891	ENSMUSG00000035455	Fignl1	-	fidgetin-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-71568449-4	chr8	71568351	71568551	+	994.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011977)	promoter-TSS (NM_011977)	-420.0	NM_011977	26457.0	Mm.38165	NM_011977	ENSMUSG00000031808	Slc27a1	FATP1|Fatp	solute carrier family 27 (fatty acid transporter), member 1	protein-coding	2.57912227786424	2.16659489117851	2.49754082549483	2.53258440940973	3.05328020466329	2.33938072792048	2.11324949818941	2.0523102606325	0.0397762258135055	0.960798150440304	0.998431161219273
Merged-chr15-101220666-1	chr15	101220566	101220766	+	690.0	f1_balb.idr	promoter-TSS (NR_045996)	promoter-TSS (NR_045996)	-581.0	NR_045996	105968.0	Mm.120798	NR_045996	ENSMUSG00000115944	AU021063	-	expressed sequence AU021063	ncRNA	1.86386935021984	1.7531003048043	1.21019102071327	2.51905871276226	1.73695928537867	1.95909015855853	3.223046959812	2.11624393091137	1.08910872819316	0.271896544535857	0.775341509331591
Merged-chr7-27186128-2	chr7	27186028	27186228	+	561.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_015782)	TTS (NM_015782)	-4979.0	NM_019394	12587.0	Mm.262447	NM_019394	ENSMUSG00000089661	Mia	CD-RAP|Cdrap|Mia1	melanoma inhibitory activity	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-64810692-4	chr5	64810611	64810811	+	907.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008453, intron 1 of 5)	intron (NM_008453, intron 1 of 5)	7188.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-103966550-2	chr2	103966450	103966650	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001142337, intron 1 of 3)	MIRc|SINE|MIR	-3007.0	NM_001142336	16909.0	Mm.29266	NM_008505	ENSMUSG00000032698	Lmo2	Rbtn-2|Rbtn2|Rhom-2|Ttg2	LIM domain only 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134207997-2	chr6	134207897	134208097	+	838.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 3 of 8)	intron (NM_001303102, intron 3 of 8)	172297.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133467451-2	chr4	133467276	133467476	+	789.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-12757.0	NM_175307	100342.0	Mm.204656	NM_175307	ENSMUSG00000046694	Fam46b	4732473B16Rik|AU045678|AU046069	family with sequence similarity 46, member B	protein-coding	1.88426837952104	1.40414129358355	2.36258060243886	2.41659538225543	1.7266684295113	2.93034931731798	3.344336533	3.05429249912008	1.64984464212775	0.0583532687189405	0.356917478410832
Merged-chr17-29062335-2	chr17	29062235	29062435	+	549.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_036469, intron 1 of 1)	intron (NR_036469, intron 1 of 1)	16791.0	NR_036469	100504267.0	Mm.438550	NR_036469	ENSMUSG00000085912	Trp53cor1	Gm16197|linc-p21|lincRNA-p21	tumor protein p53 pathway corepressor 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-74493330-4	chr11	74493242	74493442	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001015046, intron 2 of 24)	intron (NM_001015046, intron 2 of 24)	96816.0	NM_001015046	380711.0	Mm.425690	NM_001015046	ENSMUSG00000038807	Rap1gap2	AU067654|Garnl4|Gm1561|mKIAA1039	RAP1 GTPase activating protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-94631364-2	chr11	94631264	94631464	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133807, intron 1 of 6)	intron (NM_133807, intron 1 of 6)	1540.0	NM_133807	98238.0	Mm.172720	NM_133807	ENSMUSG00000020869	Lrrc59	AA959742|C78668	leucine rich repeat containing 59	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-44847926-2	chr7	44847795	44847995	+	914.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001042655, intron 3 of 16)	intron (NM_001042655, intron 3 of 16)	1184.0	NM_001042655	233204.0	Mm.27567	NM_144924	ENSMUSG00000038520	Tbc1d17	BC017607	TBC1 domain family, member 17	protein-coding	0.860637556381807	0.811212996586338	0.309176996917831	0.937519077461116	0.296368037279057	0.317589477781	0.645539685458813	0.304800281259616	-2.52913063197629	0.192616690088579	1
Merged-chr8-117259459-6	chr8	117259317	117259517	+	961.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	2398.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-152125514-2	chr4	152125414	152125614	+	896.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_207689, intron 7 of 9)	CpG	3411.0	NM_019585	56226.0	Mm.264215	NM_019585	ENSMUSG00000028943	Espn	je	espin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-94596593-2	chr11	94596499	94596699	+	765.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_153807, intron 1 of 15)	intron (NM_153807, intron 1 of 15)	5187.0	NM_153807	264895.0	Mm.386885	NM_153807	ENSMUSG00000076435	Acsf2	-	acyl-CoA synthetase family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-56887644-3	chr14	56887553	56887753	+	870.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360643, intron 1 of 24)	intron (NM_001360643, intron 1 of 24)	810.0	NM_001360643	76007.0	Mm.31417	NM_029498	ENSMUSG00000021945	Zmym2	5830413P05Rik|FIM|MYM|RAMP|SCLL|Zfp198|Znf198	zinc finger, MYM-type 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-108425139-4	chr11	108425034	108425234	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029606)	promoter-TSS (NM_029606)	-132.0	NM_029606	76380.0	Mm.344071	NM_029586	ENSMUSG00000020728	Cep112	1700001M19Rik|1700029K01Rik|8430407H02Rik|AV043680|AV207351|Ccdc46|Macoco	centrosomal protein 112	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-61529709-4	chr14	61529603	61529803	+	851.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	27183.0	NM_025697	66674.0	Mm.282706	NM_025697	ENSMUSG00000021930	Spryd7	6330409N04Rik|Clld6	SPRY domain containing 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-46031547-2	chr17	46031447	46031647	+	853.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_009505, exon 1 of 7)	exon (NM_009505, exon 1 of 7)	830.0	NM_001287058	22339.0	Mm.282184	NM_009505	ENSMUSG00000023951	Vegfa	Vegf|Vpf	vascular endothelial growth factor A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-120630445-2	chr2	120630345	120630545	+	857.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20850.0	NM_001290807	66296.0	Mm.221900	NM_025475	ENSMUSG00000027285	Haus2	1700101G24Rik|2410007P03Rik|AU020217|Cep27	HAUS augmin-like complex, subunit 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-136179619-3	chr4	136179475	136179675	+	805.416687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177733, intron 2 of 6)	intron (NM_177733, intron 2 of 6)	-1207.0	NM_001305399	242705.0	Mm.307932	NM_177733	ENSMUSG00000018983	E2f2	E2F-2	E2F transcription factor 2	protein-coding	2.15760279131247	1.8259148912937	1.7591599060544	2.35714737681534	1.84464082761831	1.04166667343682	1.01928514265391	0.999576188957146	-2.36612997903879	0.0540218861262218	0.340655881083957
Merged-chr8-24559380-3	chr8	24559279	24559479	+	895.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145949, intron 1 of 9)	intron (NM_145949, intron 1 of 9)	16954.0	NM_145949	209176.0	Mm.219580	NM_145949	ENSMUSG00000031549	Ido2	AI265623|C230043N17Rik|Ido-2|Indol1	indoleamine 2,3-dioxygenase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6279441-3	chr19	6279312	6279512	+	869.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010119, intron 1 of 4)	intron (NM_010119, intron 1 of 4)	2516.0	NM_010119	13660.0	Mm.30169	NM_010119	ENSMUSG00000024772	Ehd1	AA409636|Past1|RME-1	EH-domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-11508678-4	chr2	11508519	11508719	+	617.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177758, intron 1 of 14)	B1_Mus1|SINE|Alu	-6529.0	NM_001177757	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-22433200-4	chr8	22433124	22433324	+	948.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21884.0	NM_020560	57312.0	Mm.289402	NM_020560	ENSMUSG00000031533	Mrps31	1500002D03Rik|AA960481|Imogen38|Imogen44	mitochondrial ribosomal protein S31	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135939584-2	chr5	135939481	135939681	+	890.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4940.0	NM_018871	22628.0	Mm.233813	NM_018871	ENSMUSG00000051391	Ywhag	14-3-3gamma|D7Bwg1348e	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide	protein-coding	0.233091696357183	0.271905986486968	0.850995092254218	0.249768584084217	0.235611020561546	1.68142260595142	1.0047945259815	0.251489346349962	2.4056513059083	0.205362981643365	0.692768056351573
Merged-chr2-32361682-4	chr2	32361588	32361788	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1322.0	NM_001252538	68379.0	Mm.170508	NM_028412	ENSMUSG00000039205	Ciz1	0610038H21Rik|2900056O04Rik|LSFR1|ZNF356	CDKN1A interacting zinc finger protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-4304223-1	chr12	4304123	4304323	+	558.0	f1_c57bl6.idr	intron (NM_010881, intron 10 of 22)	L1MA8|LINE|L1	70196.0	NM_001204912	69709.0	Mm.250552	NM_001204912	ENSMUSG00000096199	Ptrhd1	2410017P09Rik	peptidyl-tRNA hydrolase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117279021-2	chr8	117278921	117279121	+	728.68335	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	22002.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-118622296-4	chr10	118622208	118622408	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-65783.0	NR_104123	103214.0	Mm.30529	NR_104123	ENSMUSG00000112230	Ifngas1	AI447422|Tmevpg1	Ifng antisense RNA 1	ncRNA	3.24310006532379	3.71449977910778	2.45269299076682	4.23795789946478	3.27033364990864	3.04416705070277	3.17419590672755	3.83326145231757	-0.308338707645522	0.616023950762452	0.977352076822579
Merged-chr4-155840463-3	chr4	155840318	155840518	+	941.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024263, intron 1 of 9)	intron (NM_024263, intron 1 of 9)	738.0	NM_024263	74761.0	Mm.159028	NM_024263	ENSMUSG00000029070	Mxra8	1200013A08Rik|1700095D18Rik|AI131686|Asp3|Dicam	matrix-remodelling associated 8	protein-coding	0.870102455603293	0.981999425955505	0.795718888751345	0.610684569080874	1.0892801449816	1.25363337671178	0.801112573432577	1.04668975339265	1.28965203470491	0.37158226510033	1
Merged-chr5-76303974-4	chr5	76303874	76304074	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001305222)	promoter-TSS (NM_001305222)	-472.0	NM_001305222	12753.0	Mm.3552	NM_007715	ENSMUSG00000029238	Clock	5330400M04Rik|KAT13D	circadian locomotor output cycles kaput	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-137437576-4	chr7	137437463	137437663	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023140)	promoter-TSS (NM_023140)	-10.0	NM_001348093	30926.0	Mm.267692	NM_023140	ENSMUSG00000031068	Glrx3	PICOT|Txnl2	glutaredoxin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-134414255-6	chr6	134414211	134414411	+	931.8174439999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355686)	promoter-TSS (NM_001355686)	-117.0	NM_001355686	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80152770-5	chr10	80152615	80152815	+	929.5599980000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347117, intron 4 of 7)	intron (NM_001347117, intron 4 of 7)	3033.0	NM_001305799	59090.0	Mm.143813	NM_021565	ENSMUSG00000035621	Midn	3000003C15Rik	midnolin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-120479466-4	chr6	120479383	120479583	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008359, intron 11 of 12)	intron (NM_008359, intron 11 of 12)	14324.0	NM_033567	94047.0	Mm.23088	NM_033567	ENSMUSG00000094626	Tmem121b	AW048664|Cecr6	transmembrane protein 121B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-33213129-2	chr15	33213029	33213229	+	580.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_018755, exon 3 of 9)	exon (NM_018755, exon 3 of 9)	130000.0	NM_176073	54381.0	Mm.158251	NM_018755	ENSMUSG00000039007	Cpq	1190003P12Rik|2610034C17Rik|Hls2|Lal-1|Pgcp	carboxypeptidase Q	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4200214-4	chr16	4200125	4200325	+	998.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025432, intron 1 of 30)	RSINE1|SINE|B4	13179.0	NM_001025432	12914.0	Mm.132238	NM_001025432	ENSMUSG00000022521	Crebbp	AW558298|CBP|CBP/p300|KAT3A|p300/CBP	CREB binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-99083467-3	chr15	99083367	99083567	+	819.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_030159)	TTS (NM_030159)	2662.0	NR_105925	102465579.0		NR_105925	ENSMUSG00000098698	Mir6960	Gm27620|mmu-mir-6960	microRNA 6960	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-57124184-4	chr2	57124086	57124286	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001139509)	promoter-TSS (NM_001139509)	-183.0	NM_001139509	18227.0	Mm.3507	NM_013613	ENSMUSG00000026826	Nr4a2	HZF-3|NOT|Nurr1|RNR-1|TINOR|TINUR	nuclear receptor subfamily 4, group A, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-35729314-4	chr5	35729202	35729402	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_194344)	promoter-TSS (NM_194344)	-26.0	NM_194344	231147.0	Mm.290429	NM_194344	ENSMUSG00000036553	Sh3tc1	4631428G15|BC024909	SH3 domain and tetratricopeptide repeats 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-70208279-3	chr9	70208190	70208390	+	779.1777950000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181072, intron 1 of 27)	intron (NM_181072, intron 1 of 27)	940.0	NM_181072	71602.0	Mm.249311	NM_181072	ENSMUSG00000032220	Myo1e	2310020N23Rik|9130023P14Rik|AA407778|myosin-1e|myr 3	myosin IE	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-55101840-1	chr13	55101740	55101940	+	595.0	f1_c57bl6.idr	Intergenic	Intergenic	-1540.0	NM_011307	20184.0	Mm.259301	NM_011307	ENSMUSG00000025878	Uimc1	9430016E08Rik|D330018D10Rik|D630032M02Rik|RIP110|Rxrip110	ubiquitin interaction motif containing 1	protein-coding	0.47598629555056	0.962247247857229	0.211398830871431	0.206039724380801	0.483038075901963	0.219874184221687	0.212927499872641	0.866576232840464	-0.180275266594807	0.926067253184398	1
Merged-chr19-16872747-3	chr19	16872644	16872844	+	827.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008023, exon 1 of 1)	exon (NM_008023, exon 1 of 1)	1086.0	NM_008023	14240.0	Mm.7971	NM_008023	ENSMUSG00000056829	Foxb2	Fkh4	forkhead box B2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-67424800-2	chr5	67424700	67424900	+	636.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164806, intron 1 of 4)	intron (NM_001164806, intron 1 of 4)	2999.0	NM_001164806	666938.0	Mm.101339	NM_001164806	ENSMUSG00000092060	Bend4	D330027G24Rik|EG666938	BEN domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102499761-1	chr12	102499661	102499861	+	657.5	f0_balb.idr	Intergenic	Intergenic	29851.0	NM_013747	27277.0	Mm.273370	NM_013747	ENSMUSG00000021192	Golga5	Ret-II	golgi autoantigen, golgin subfamily a, 5	protein-coding	0.817086588133416	1.70870651592691	0.849936859163888	1.4778017791991	1.51200067716895	1.7233469295396	0.853377176416447	1.59896234872613	0.651095869376003	0.640246532264215	0.982599433509505
Merged-chr2-118550224-2	chr2	118550123	118550323	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138313)	promoter-TSS (NM_138313)	-537.0	NM_138313	171543.0	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	0.0667299713549505	0.0844213775236955	0.40566496957857	0.6085377787548	0.0678359553599521	0.0857259707842291	0.762504533978463	0.242241923510989	0.101850729642705	0.960661010751965	1
Merged-chr5-36747974-2	chr5	36747874	36748074	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_133724, exon 1 of 1)	3' UTR (NM_133724, exon 1 of 1)	705.0	NM_133724	117197.0	Mm.46744	NM_133724	ENSMUSG00000060708	Bloc1s4	2610101N07Rik|Blos4|Cno	biogenesis of lysosomal organelles complex-1, subunit 4, cappuccino	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81471393-2	chr10	81471293	81471493	+	697.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_176954, intron 2 of 11)	intron (NM_176954, intron 2 of 11)	1738.0	NM_001311127	319586.0	Mm.152689	NM_176954	ENSMUSG00000034818	Celf5	4930565A21Rik|Brunol5	CUGBP, Elav-like family member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-98785905-4	chr11	98785820	98786020	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9596.0	NM_001361931	74026.0	Mm.258352	NM_028722	ENSMUSG00000052915	Msl1	2810017F12Rik|4121402D02Rik|4930463F05Rik|AA682082|Msl-1	male specific lethal 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-100440451-7	chr9	100440344	100440544	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46029.0	NM_001033543	213208.0	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	1.50813928319913	1.52481607746001	2.22549367293617	1.24245136872216	1.52105987393315	1.71508530291917	2.55733441257702	1.01535662244771	0.433144319319337	0.703893344496427	0.998431161219273
Merged-chr13-117223296-4	chr13	117223206	117223406	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010330, intron 1 of 8)	MIR|SINE|MIR	2733.0	NM_010330	13723.0	Mm.274926	NM_010330	ENSMUSG00000021728	Emb	AL022799|Gp70	embigin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-24530672-2	chr5	24530572	24530772	+	597.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3824.0	NM_015739	231044.0	Mm.246596	NM_015739	ENSMUSG00000067724	Gbx1	Gbx-1	gastrulation brain homeobox 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-103412699-4	chr11	103412560	103412760	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183034)	promoter-TSS (NM_183034)	4.0	NM_183034	353047.0	Mm.18556	NM_183034	ENSMUSG00000034247	Plekhm1	AP162|B2|BC038943|D330036J23Rik	pleckstrin homology domain containing, family M (with RUN domain) member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-21630772-4	chr16	21630667	21630867	+	995.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081366, intron 45 of 46)	intron (NM_001081366, intron 45 of 46)	63898.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-54468015-2	chr14	54467915	54468115	+	672.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_022993, exon 5 of 7)	exon (NM_022993, exon 5 of 7)	3868.0	NM_022993	65107.0	Mm.472719	NM_022993	ENSMUSG00000022175	Lrp10	Lrp9	low-density lipoprotein receptor-related protein 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-4723865-4	chr7	4723768	4723968	+	984.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177887, exon 4 of 5)	exon (NM_177887, exon 4 of 5)	1214.0	NM_001142792	330460.0	Mm.361851	NM_177887	ENSMUSG00000046456	Tmem150b	A630041N19|Tmem224	transmembrane protein 150B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-144043290-2	chr2	144043190	144043390	+	555.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001044750, intron 1 of 2)	intron (NM_001044750, intron 1 of 2)	10188.0	NM_207275	403171.0	Mm.389362	NM_207275	ENSMUSG00000037307	Banf2	4930517K23Rik|Baf-L|Baf-like|Gm115	barrier to autointegration factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-114366625-1	chr12	114366525	114366725	+	889.0	f1_c57bl6.idr	Intergenic	Intergenic	102841.0	NR_106062	102465663.0		NR_106062	ENSMUSG00000105438	Mir7094-1	mmu-mir-7094-1	microRNA 7094-1	ncRNA	0.182728539422084	-0.0599912009678081	0.585650940175858	0.343371801804515	-0.0737740067351087	-0.0589019058013053	-0.0637535720613807	0.0931114773227042	-2.98441670289827	0.167048002653523	1
Merged-chr11-98775422-4	chr11	98775324	98775524	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145434)	promoter-TSS (NM_145434)	-47.0	NM_145434	217166.0	Mm.390397	NM_145434	ENSMUSG00000020889	Nr1d1	A530070C09Rik|R75201	nuclear receptor subfamily 1, group D, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65554124-2	chr9	65554043	65554243	+	776.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_153119, exon 6 of 6)	3' UTR (NM_153119, exon 6 of 6)	25944.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	-1.21575676353841	-1.1882771616738	-1.1995328574972	-1.2087786211754	-1.21524488394202	-1.18583800543462	-1.19698481468061	-0.540595393272118	2.74438217975722	0.425994238664144	1
Merged-chr8-119793356-2	chr8	119793256	119793456	+	624.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14940.0	NM_028883	74347.0	Mm.358759	NM_028883	ENSMUSG00000034105	Tldc1	4632415K11Rik|Kiaa1609	TBC/LysM associated domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-97837848-2	chr15	97837748	97837948	+	615.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001204280, intron 1 of 21)	intron (NM_001204280, intron 1 of 21)	-6081.0	NM_001204276	56233.0	Mm.384027	NM_019572	ENSMUSG00000022475	Hdac7	5830434K02Rik|HD7|HD7a|Hdac7a|mFLJ00062	histone deacetylase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-9129068-4	chr13	9128956	9129156	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172585, intron 3 of 17)	intron (NM_172585, intron 3 of 17)	35175.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-80266542-3	chr15	80266448	80266648	+	690.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2242.0	NM_175109	66538.0	Mm.39485	NM_175109	ENSMUSG00000051518	Rps19bp1	2510038A11Rik|AI604923|S19BP	ribosomal protein S19 binding protein 1	protein-coding	1.17718229245151	0.890298367567919	1.29998438902925	0.649637834674846	1.67388253719054	0.673295864546779	0.661478655178886	1.26283666770185	0.512170303335498	0.738739437797341	0.998431161219273
Merged-chr2-45050023-4	chr2	45049924	45050124	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355291, intron 2 of 9)	intron (NM_001355291, intron 2 of 9)	-26847.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-20108368-4	chr11	20108313	20108513	+	901.804199	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146243, intron 1 of 8)	Lx8b|LINE|L1	4538.0	NM_146243	66713.0	Mm.259045	NM_146243	ENSMUSG00000020152	Actr2	4921510D23Rik|AA409782|Arp2|D6Ertd746e	ARP2 actin-related protein 2	protein-coding	2.33610473835253	4.05688997013531	2.56198102868711	3.51683936533589	3.36490582135158	4.29025224052982	2.58435248213188	3.12106960069697	0.28857586542337	0.674476201205965	0.99440487726309
Merged-chr10-117363275-4	chr10	117363168	117363368	+	985.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013391, intron 3 of 9)	B2_Mm2|SINE|B2	13705.0	NM_001013391	432508.0	Mm.478881	NM_001013391	ENSMUSG00000055531	Cpsf6	4733401N12Rik|AI256641|CFIM|CFIM68|HPBRII-4|HPBRII-7	cleavage and polyadenylation specific factor 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-93975168-2	chr8	93975068	93975268	+	911.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011787, intron 11 of 13)	intron (NM_011787, intron 11 of 13)	37472.0	NM_011787	23802.0	Mm.34641	NM_011787	ENSMUSG00000031751	Amfr	gp78	autocrine motility factor receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-63399309-7	chr4	63399180	63399380	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045514, intron 1 of 21)	intron (NM_001045514, intron 1 of 21)	-1040.0	NM_001305432	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-165780693-4	chr1	165780646	165780846	+	830.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7935.0	NM_001113393	12503.0	Mm.217308	NM_031162	ENSMUSG00000005763	Cd247	4930549J05Rik|A430104F18Rik|AW552088|Cd3|Cd3-eta|Cd3-zeta|Cd3h|Cd3z|Cd3zeta|T3z|Tcrk|Tcrz	CD247 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26461230-2	chr17	26461057	26461257	+	643.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46192.0	NM_001081656	240055.0	Mm.133211	NM_001081656	ENSMUSG00000034413	Neurl1b	C230078M08Rik|EG240055	neuralized E3 ubiquitin protein ligase 1B	protein-coding	-0.700064241511417	-0.186671140929496	-0.692852367725508	-0.695563882069579	-0.699394869705802	-0.177296101845517	-0.692077155152847	-0.695090216270211	0.0394491945098347	0.989215944639676	1
Merged-chr4-62291327-4	chr4	62291237	62291437	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290518)	promoter-TSS (NM_001290518)	-210.0	NM_001290518	20530.0	Mm.292539	NM_025286	ENSMUSG00000066152	Slc31a2	AI604396|CTR2	solute carrier family 31, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-87756332-3	chr1	87756269	87756469	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029846, intron 1 of 17)	CpG	358.0	NM_001205392	77040.0	Mm.272972	NM_029846	ENSMUSG00000026289	Atg16l1	1500009K01Rik|Apg16l|Atg16l|WDR30	autophagy related 16-like 1 (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-117137349-4	chr4	117137241	117137441	+	903.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3378.0	NM_001313916	12795.0	Mm.259022	NM_013807	ENSMUSG00000028680	Plk3	Cnk|Fnk|PLK-3|PRK	polo like kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-73565256-2	chr12	73565156	73565356	+	725.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16773.0	NR_044985	73644.0	Mm.369885	NR_044985	ENSMUSG00000113800	2210039B01Rik	-	RIKEN cDNA 2210039B01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-4612872-4	chr10	4612781	4612981	+	963.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007956, intron 1 of 8)	intron (NM_007956, intron 1 of 8)	892.0	NM_007956	13982.0	Mm.9213	NM_007956	ENSMUSG00000019768	Esr1	ER|ER-alpha|ERa|ERalpha|ESR|Estr|Estra|Nr3a1	estrogen receptor 1 (alpha)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-123330754-4	chr7	123330631	123330831	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316713, intron 2 of 19)	intron (NM_001316713, intron 2 of 19)	39184.0	NM_001122643	70497.0	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-77032644-3	chr10	77032516	77032716	+	890.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199271)	promoter-TSS (NM_001199271)	-123.0	NM_001199271	20509.0	Mm.265060	NM_031196	ENSMUSG00000001436	Slc19a1	AI323572|RFC|RFC-1|RFC1	solute carrier family 19 (folate transporter), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-127579338-2	chr3	127579238	127579438	+	701.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_197997, intron 8 of 25)	L2a|LINE|L2	25849.0	NM_197997	71643.0	Mm.274884	NM_197997	ENSMUSG00000051278	Zgrf1	4930422G04Rik|AI448607	zinc finger, GRF-type containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-78179727-2	chr11	78179627	78179827	+	553.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_106113)	TTS (NR_106113)	900.0	NR_106113	102465761.0		NR_106113	ENSMUSG00000099101	Mir7653	Gm27900|mmu-mir-7653	microRNA 7653	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-50042802-3	chr11	50042707	50042907	+	911.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290750, intron 1 of 7)	intron (NM_001290750, intron 1 of 7)	17476.0	NM_001290750	59044.0	Mm.359004	NM_021540	ENSMUSG00000020376	Rnf130	2510042A13Rik|G1RZFP|G1rp|GOLIATH|GP	ring finger protein 130	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-24173602-4	chr17	24173505	24173705	+	830.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3927.0	NM_001361531	11984.0	Mm.30155	NM_009729	ENSMUSG00000024121	Atp6v0c	Atp6c|Atp6c2|Atp6l|Atpl|Atpl-rs1|PL16|VATL|Vma3	ATPase, H+ transporting, lysosomal V0 subunit C	protein-coding	3.37016836847104	2.10241368994491	2.38041591578991	3.19080104441264	3.1816261214976	2.11775294913227	2.39931523472114	2.89425868585206	-0.291078060576099	0.704214832621433	0.998431161219273
Merged-chr6-42925652-2	chr6	42925552	42925752	+	721.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1VL2|LINE|L1	-1581.0	NM_146295	258292.0	Mm.222992	NM_146295	ENSMUSG00000073111	Olfr446	MOR261-12	olfactory receptor 446	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-109376645-2	chr11	109376545	109376745	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010303, intron 2 of 3)	intron (NM_010303, intron 2 of 3)	-12991.0	NR_038097	100036768.0	Mm.467767	NR_038097	ENSMUSG00000056687	Gm11696	-	predicted gene 11696	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-127875779-4	chr7	127875671	127875871	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001362191)	promoter-TSS (NM_001362191)	-129.0	NM_001362191	244219.0	Mm.207872	NM_146259	ENSMUSG00000049728	Zfp668	BC030314|E130018B19Rik|Znf668	zinc finger protein 668	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-83722669-4	chr7	83722548	83722748	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001360087, exon 2 of 19)	exon (NM_001360087, exon 2 of 19)	9750.0	NM_001360087	16170.0	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-116409670-4	chr7	116409587	116409787	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011083, intron 2 of 32)	intron (NM_011083, intron 2 of 32)	33771.0	NM_011083	18704.0	Mm.3810	NM_011083	ENSMUSG00000030660	Pik3c2a	Cpk-m|PI3KC2	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-74395996-2	chr1	74395896	74396096	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_153088, exon 7 of 7)	3' UTR (NM_153088, exon 7 of 7)	1686.0	NR_029743	387219.0		NR_029743	ENSMUSG00000065468	Mir26b	Mirn26b|mir-26b|mmu-mir-26b	microRNA 26b	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-6940343-2	chr19	6940243	6940443	+	567.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177361, intron 2 of 6)	intron (NM_001177361, intron 2 of 6)	850.0	NM_207220	107173.0	Mm.276555	NM_207220	ENSMUSG00000024958	Gpr137	AI428855	G protein-coupled receptor 137	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-140351863-4	chr1	140351755	140351955	+	805.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081027, intron 2 of 27)	Lx8|LINE|L1	105598.0	NM_001081027	240776.0	Mm.483845	NM_001081027	ENSMUSG00000052726	Kcnt2	E330038N15Rik|Slick	potassium channel, subfamily T, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-136080124-4	chr3	136079973	136080173	+	646.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033350, intron 11 of 16)	intron (NM_001033350, intron 11 of 16)	-239804.0	NR_040540	71038.0	Mm.410798	NR_040540	ENSMUSG00000106306	4933401H06Rik	-	RIKEN cDNA 4933401H06 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-94183920-2	chr8	94183820	94184020	+	596.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28|LTR|ERVL	4831.0	NM_013602	17748.0	Mm.192991	NM_013602	ENSMUSG00000031765	Mt1	MT-I|Mt-1	metallothionein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-76587547-4	chr11	76587439	76587639	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9800.0	NM_198894	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-97163233-4	chr15	97163124	97163324	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155278, intron 2 of 3)	MLT1A0|LTR|ERVL-MaLR	4020.0	NR_155278	102635594.0	Mm.392594	NR_155278	ENSMUSG00000116295	Gm32885	-	predicted gene, 32885	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-67158960-4	chr6	67158871	67159071	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-108008.0	NM_001113566	66870.0	Mm.240490	NM_025814	ENSMUSG00000036371	Serbp1	1200009K13Rik|9330147J08Rik|AL022786|Pairbp1	serpine1 mRNA binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-108819662-2	chr9	108819562	108819762	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-6383.0	NM_001359573	107934.0	Mm.39945	NM_080437	ENSMUSG00000023473	Celsr3	Adgrc3|Fmi1|flamingo|mKIAA0812	cadherin, EGF LAG seven-pass G-type receptor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-45944391-2	chr11	45944320	45944520	+	816.666626	f0_balb.idr|f0_c57.idr	TTS (NM_001290737)	TTS (NM_001290737)	515.0	NM_028185	72290.0	Mm.249827	NM_028185	ENSMUSG00000044847	Lsm11	2210404M20Rik|AV079530	U7 snRNP-specific Sm-like protein LSM11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-42954557-4	chr4	42954443	42954643	+	780.174988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355439, intron 3 of 4)	intron (NM_001355439, intron 3 of 4)	4147.0	NM_001355440	56323.0	Mm.20437	NM_019874	ENSMUSG00000036052	Dnajb5	1110058L06Rik|AI462558|Hsc40|Hsp40-3	DnaJ heat shock protein family (Hsp40) member B5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-34942277-3	chr6	34942209	34942409	+	619.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21361.0	NM_009292	20899.0	Mm.5171	NM_009292	ENSMUSG00000029848	Stra8	-	stimulated by retinoic acid gene 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-98866743-2	chr15	98866643	98866843	+	601.5	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001033276, exon 2 of 55)	5' UTR (NM_001033276, exon 2 of 55)	4462.0	NM_001033276	381022.0	Mm.264889	NM_001033276	ENSMUSG00000048154	Kmt2d	ALR|BC032281|BC058659|C430014K11Rik|KMT2B|Mll2|Mll4	lysine (K)-specific methyltransferase 2D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128128801-2	chr2	128128701	128128901	+	601.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_207680, exon 2 of 4)	exon (NM_207680, exon 2 of 4)	1226.0	NM_001284410	12125.0	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-76977164-4	chr16	76977032	76977232	+	889.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33749.0	NR_040573	76601.0	Mm.396217	NR_040573	ENSMUSG00000100857	1700041M19Rik	-	RIKEN cDNA 1700041M19 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-73474535-2	chr5	73474435	73474635	+	607.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6520.0	NM_001190734	100737.0	Mm.220312	NM_178896	ENSMUSG00000051674	Dcun1d4	AI836376	DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94965882-2	chr10	94965782	94965982	+	879.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-21304.0	NM_018797	54712.0	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28936747-1	chr17	28936647	28936847	+	540.0	f1_c57bl6.idr	intron (NM_153390, intron 2 of 2)	B3|SINE|B2	5515.0	NM_153390	69307.0	Mm.107605	NM_153390	ENSMUSG00000045378	Pxt1	1700001G18Rik|Stepp	peroxisomal, testis specific 1	protein-coding	-2.18292257394068	-2.15545247547656	-2.03304972317742	-2.17058342868585	-2.18099422382073	-2.1536522739386	-2.16187909550322	-2.16936197735154	-0.683654500252594	0.846597994014493	1
Merged-chr7-142387426-2	chr7	142387326	142387526	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009983, intron 1 of 8)	intron (NM_009983, intron 1 of 8)	444.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	4.50205682533491	4.42190242667286	4.58875018847497	4.04643004612681	4.45954374752584	4.12062020875438	4.86963377454667	3.86276252164122	-0.0270022031425741	0.947601879920661	0.998431161219273
Merged-chr14-52021493-2	chr14	52021393	52021593	+	591.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253696)	promoter-TSS (NM_001253696)	-760.0	NM_027248	69890.0	Mm.475652	NM_027248	ENSMUSG00000049295	Zfp219	2010302A17Rik|Znf219	zinc finger protein 219	protein-coding	1.72350678957757	1.92769911890467	1.170206022039	2.03066552344475	1.47863557180087	1.94185822103299	1.99875860109743	2.04124660601264	0.370484785270432	0.724370476082469	0.998431161219273
Merged-chr7-16406246-4	chr7	16406181	16406381	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198631, intron 1 of 13)	intron (NM_198631, intron 1 of 13)	5085.0	NM_198631	330474.0	Mm.333594	NM_198631	ENSMUSG00000059273	Zc3h4	Bwq1|Gm768|Kiaa1064-hp|mKIAA1064	zinc finger CCCH-type containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-29495901-4	chr11	29495797	29495997	+	993.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176841, intron 25 of 31)	intron (NM_176841, intron 25 of 31)	19136.0	NM_026465	67939.0	Mm.251087	NM_026465	ENSMUSG00000032673	Prorsd1	2010316F05Rik|Ncrna00117|Prdxdd1	prolyl-tRNA synthetase domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117367582-4	chr8	117367451	117367651	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028941, intron 1 of 20)	L2b|LINE|L2	18381.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128968280-3	chr2	128968198	128968398	+	922.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178404, intron 1 of 11)	(T)n|Simple_repeat|Simple_repeat	896.0	NM_178404	78751.0	Mm.26377	NM_178404	ENSMUSG00000042851	Zc3h6	4631426G04Rik|4833425H18Rik|AU024389|AW060453|Zc3hdc6|mKIAA2035	zinc finger CCCH type containing 6	protein-coding	3.56017914459937	3.34385698415903	2.54285362394051	3.05517295823255	3.36529075630523	2.94074934123944	2.39612806182748	3.52705775036033	-0.0812252241486703	0.900451072292527	0.998431161219273
Merged-chr6-38682804-2	chr6	38682704	38682904	+	564.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19735.0	NM_001101507	665180.0	Mm.349066	NM_001101507	ENSMUSG00000079598	Clec2l	AI414054|AW122724|Gm1064	C-type lectin domain family 2, member L	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-39835017-4	chr1	39834937	39835137	+	823.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12293.0	NR_040465	73426.0	Mm.396239	NR_040465	ENSMUSG00000101634	1700066B17Rik	-	RIKEN cDNA 1700066B17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-44790095-2	chr18	44789995	44790195	+	595.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085373, intron 1 of 18)	Lx5|LINE|L1	22087.0	NM_001085373	328949.0	Mm.312511	NM_001033406	ENSMUSG00000071856	Mcc	D18Ertd451e|E330037C19	mutated in colorectal cancers	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27366387-3	chr2	27366291	27366491	+	953.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_133905, intron 1 of 29)	intron (NR_133905, intron 1 of 29)	61217.0	NR_133905	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-102246114-4	chr7	102245991	102246191	+	990.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019566, intron 1 of 1)	intron (NM_019566, intron 1 of 1)	4027.0	NM_019566	56212.0	Mm.259795	NM_019566	ENSMUSG00000073982	Rhog	2810426G09Rik|Arhg|Sid10750	ras homolog family member G	protein-coding	0.333723706154118	0.369598454792702	1.27362160677211	0.349061313859227	0.934392377561247	0.372159690090918	0.360653903019868	1.55796174429002	1.05865788023301	0.572858666149788	0.96433798659599
Merged-chr6-84068216-2	chr6	84068116	84068316	+	727.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077694, intron 10 of 54)	intron (NM_001077694, intron 10 of 54)	48830.0	NM_021469	26903.0	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-105786055-6	chr12	105786073	105786273	+	822.055542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011112, intron 1 of 21)	intron (NM_011112, intron 1 of 21)	1476.0	NM_001347440	18789.0	Mm.255877	NM_011112	ENSMUSG00000021111	Papola	Pap|PapIII|Plap	poly (A) polymerase alpha	protein-coding	0.880666651154529	1.63698600275774	1.29863988165542	1.52947987168355	0.883773498869862	1.77239017622225	1.59046442405279	1.53789385761431	0.429374231981013	0.739874677354505	0.998431161219273
Merged-chr2-80110732-2	chr2	80110632	80110832	+	630.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355141, intron 2 of 15)	intron (NM_001355141, intron 2 of 15)	18239.0	NM_016744	18573.0	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-98878464-4	chr10	98878353	98878553	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(A)n|Simple_repeat|Simple_repeat	-36189.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-34637183-4	chr5	34637090	34637290	+	959.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356979)	promoter-TSS (NM_001356979)	22.0	NM_001356978	68294.0	Mm.34564	NM_026660	ENSMUSG00000001082	Mfsd10	0610009O03Rik|Tetran	major facilitator superfamily domain containing 10	protein-coding	3.52845225004883	4.3885504612573	3.17657387356036	4.49639153406341	4.02314972817739	3.19092514637144	3.69983486055972	4.26047059401159	-0.20931947147637	0.689673386707909	0.996533206832645
Merged-chr3-103871906-1	chr3	103871806	103872006	+	548.0	f0_c57.idr	intron (NR_104070, intron 3 of 22)	(CAAA)n|Simple_repeat|Simple_repeat	11629.0	NM_008979	19260.0	Mm.395	NM_008979	ENSMUSG00000027843	Ptpn22	70zpep|PEP|Ptpn8	protein tyrosine phosphatase, non-receptor type 22 (lymphoid)	protein-coding	2.58180027814379	2.10662300496931	1.71300883971758	2.78840280036659	2.01079005484996	2.26042596346268	1.26656277868505	1.67562554593314	-1.26312230858807	0.19343904624701	0.672979415292371
Merged-chr9-25482577-4	chr9	25482489	25482689	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026189, exon 2 of 8)	exon (NM_026189, exon 2 of 8)	992.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-6331334-4	chr7	6331235	6331435	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033249)	promoter-TSS (NM_001033249)	-901.0	NM_001033249	213011.0	Mm.333558	NM_001033249	ENSMUSG00000030443	Zfp583	BC056221|Znf583	zinc finger protein 583	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-54816877-2	chr1	54816830	54817030	+	760.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081433, intron 2 of 27)	RLTR11A2|LTR|ERVK	109457.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	0.713861769088243	0.175448698779231	0.166182142332879	0.158930568015148	0.610681113937641	0.177517693867485	1.40608311987577	0.16020403570439	1.99188393068329	0.32071636085363	1
Merged-chr16-84581324-2	chr16	84581239	84581439	+	717.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	-98450.0	NR_040537	78023.0	Mm.243853	NR_040537		4930529L06Rik	-	RIKEN cDNA 4930529L06 gene	ncRNA	1.80124937686522	1.49405349815567	1.57221307580666	1.73632303718094	1.73873283460709	0.916951640579087	0.900999742801611	0.887113171346114	-1.70835350573155	0.205312593055647	0.692768056351573
Merged-chr9-106307449-2	chr9	106307349	106307549	+	715.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027354, intron 8 of 10)	MIRb|SINE|MIR	26388.0	NM_027354	70235.0	Mm.23054	NM_027354	ENSMUSG00000023345	Poc1a	2510040D07Rik|Wdr51a|cha	POC1 centriolar protein A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95228753-4	chr3	95228655	95228855	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019914)	promoter-TSS (NM_019914)	-78.0	NM_019914	56772.0	Mm.331208	NM_019914	ENSMUSG00000053192	Mllt11	AI839562|Af1q|Zfp692	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-81852694-2	chr9	81852594	81852794	+	753.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2B2|LINE|L1	-10976.0	NM_001357477	75033.0	Mm.335329	NM_175213	ENSMUSG00000043289	Mei4	4930486G11Rik	meiotic double-stranded break formation protein 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-132133661-4	chr1	132133528	132133728	+	946.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008795, intron 1 of 15)	L2|LINE|L2	6057.0	NM_008795	18557.0	Mm.28130	NM_008795	ENSMUSG00000026437	Cdk18	AA682070|Ctk18|Pctk3	cyclin-dependent kinase 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-17410927-4	chr14	17410785	17410985	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-250075.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-11455393-2	chr8	11455293	11455493	+	856.7999880000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_011227, intron 1 of 1)	B3|SINE|B2	-22536.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166665689-3	chr2	166665595	166665795	+	940.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	RMER15|LTR|ERVL	48137.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-80256154-4	chr18	80256068	80256268	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164424)	promoter-TSS (NM_001164424)	-58.0	NM_001164424	66943.0	Mm.29247	NM_025861	ENSMUSG00000034006	Pqlc1	2310009N05Rik|4933425L21Rik|5730564E11Rik|C78974	PQ loop repeat containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-45595527-4	chr11	45595405	45595605	+	949.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-212578.0	NR_045876	100009664.0	Mm.415439	NR_045876		F630206G17Rik	-	RIKEN cDNA F630206G17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-27899148-2	chr3	27899048	27899248	+	826.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2780.0	NM_001164437	208613.0	Mm.59189	NM_001164437	ENSMUSG00000043164	Tmem212	E030011K20Rik|Gm564	transmembrane protein 212	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-13297220-2	chr9	13297120	13297320	+	602.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50264.0	NM_025534	66396.0	Mm.290620	NM_025534	ENSMUSG00000079084	Ccdc82	2310043N13Rik	coiled-coil domain containing 82	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53147186-2	chr4	53147086	53147286	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 1 of 49)	intron (NM_013454, intron 1 of 49)	12709.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89715855-2	chr3	89715755	89715955	+	623.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357958, intron 1 of 14)	intron (NM_001357958, intron 1 of 14)	617.0	NM_001357958	56417.0	Mm.316628	NM_019655	ENSMUSG00000027951	Adar	AV242451|Adar1|Adar1p110|Adar1p150|DRADA|mZaADAR	adenosine deaminase, RNA-specific	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-10280479-2	chr16	10280379	10280579	+	777.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MMERGLN-int|LTR|ERV1	33489.0	NM_007929	13731.0	Mm.246009	NM_007929	ENSMUSG00000022505	Emp2	XMP	epithelial membrane protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-78364258-4	chr10	78364169	78364369	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12569.0	NM_053014	28169.0	Mm.141230	NM_053014	ENSMUSG00000001211	Agpat3	AW061257|AW493985|D10Jhu12e|lpaat3	1-acylglycerol-3-phosphate O-acyltransferase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-76736135-4	chr11	76736018	76736218	+	874.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356321, intron 7 of 8)	intron (NM_001356321, intron 7 of 8)	27460.0	NM_016810	53334.0	Mm.20931	NM_016810	ENSMUSG00000010392	Gosr1	AI414660|AI426320|BB145494|GOS-28|GOSRI|GS28	golgi SNAP receptor complex member 1	protein-coding	1.4767458986161	1.9602992044426	2.32286012716665	1.54778004891927	2.30497714947664	2.10677884169181	1.76524999750615	1.14638525432957	0.0938281076719306	0.929735103354808	0.998431161219273
Merged-chr15-38691490-4	chr15	38691399	38691599	+	863.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025494, intron 12 of 12)	intron (NM_025494, intron 12 of 12)	29595.0	NM_025494	66335.0	Mm.276618	NM_025494	ENSMUSG00000022295	Atp6v1c1	1700025B18Rik|U13839	ATPase, H+ transporting, lysosomal V1 subunit C1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-11372481-3	chr19	11372380	11372580	+	859.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3008.0	NM_001310331	666907.0		NM_001310331	ENSMUSG00000101389	Ms4a4a	EG666907	membrane-spanning 4-domains, subfamily A, member 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-144717007-2	chr3	144716907	144717107	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001282037, intron 1 of 10)	intron (NM_001282037, intron 1 of 10)	3328.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-88757208-2	chr8	88757113	88757313	+	588.0	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	60185.0	NM_001128171	74256.0	Mm.490395	NM_173369	ENSMUSG00000036712	Cyld	2010013M14Rik|2900009M21Rik|C130039D01Rik|CDMT|CYLD1|EAC|mKIAA0849	CYLD lysine 63 deubiquitinase	protein-coding	0.61704013440349	1.0922120044924	0.64696752029022	0.635889595107956	0.96452719142604	1.26710887189773	1.34984967731129	1.91246643270248	3.31642294027775	0.0356314275475977	0.267302543382291
Merged-chr12-75638530-3	chr12	75638434	75638634	+	864.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028203, intron 1 of 1)	Lx7|LINE|L1	-6785.0	NR_038063	665931.0	Mm.341719	NR_038063		Rplp2-ps1	Gm7852	ribosomal protein, large P2, pseudogene 1	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-69834294-3	chr11	69834166	69834366	+	749.266663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_198862, exon 1 of 7)	exon (NM_198862, exon 1 of 7)	583.0	NM_198862	216856.0	Mm.151293	NM_198862	ENSMUSG00000051790	Nlgn2	NL2|NLG2	neuroligin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-75236461-4	chr1	75236357	75236557	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159885)	promoter-TSS (NM_001159885)	34.0	NM_178055	56812.0	Mm.489660	NM_020266	ENSMUSG00000026203	Dnajb2	2700059H22Rik|Dnajb10|Hsj1|mDj8	DnaJ heat shock protein family (Hsp40) member B2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-89404291-4	chr7	89404203	89404403	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008055)	promoter-TSS (NM_008055)	-63.0	NM_008055	14366.0	Mm.86755	NM_008055	ENSMUSG00000049791	Fzd4	Fz4	frizzled class receptor 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-33876542-4	chr1	33876404	33876604	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177235, intron 3 of 6)	MIRb|SINE|MIR	31117.0	NM_177235	320705.0	Mm.336619	NM_177235	ENSMUSG00000042182	Bend6	B230209C24Rik	BEN domain containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-67333909-1	chr13	67333809	67334009	+	607.0	f1_c57bl6.idr	Intergenic	ORR1A2-int|LTR|ERVL-MaLR	-1349.0	NM_177622	218314.0	Mm.289695	NM_177622	ENSMUSG00000057842	Zfp595	A230042K10Rik|Rslcan23	zinc finger protein 595	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-4821979-4	chr15	4821859	4822059	+	890.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-76778.0	NM_001166066	223825.0	Mm.159281	NM_001166066	ENSMUSG00000022155	Mroh2b	4930455B06Rik|Heatr7b2|SPIF	maestro heat-like repeat family member 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-134480961-4	chr4	134480874	134481074	+	710.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12654.0	NM_019641	16765.0	Mm.378957	NM_019641	ENSMUSG00000028832	Stmn1	19k|Lag|Lap18|Op18|P18|P19|Pig|Pp17|Pp18|Pp19|Pr22|Smn	stathmin 1	protein-coding	3.32200041845865	3.02464885428641	3.98365120153635	3.25597449218169	2.92086888598544	4.02304115492468	2.4739704555167	4.09726864122957	0.162393067973488	0.79441862002886	0.998431161219273
Merged-chr17-74528358-4	chr17	74528241	74528441	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007566)	promoter-TSS (NM_007566)	46.0	NM_007566	12211.0	Mm.442564	NM_007566	ENSMUSG00000024073	Birc6	A430032G04Rik|A430040A19Rik|AA501170|Bruce|D630005A10Rik|mKIAA1289	baculoviral IAP repeat-containing 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-69871781-4	chr12	69871690	69871890	+	909.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201519, intron 2 of 30)	intron (NM_201519, intron 2 of 30)	-21315.0	NM_178628	73991.0	Mm.474462	NM_178628	ENSMUSG00000021066	Atl1	4930435M24Rik|Adfsp|Fsp1|Spg3|Spg3a	atlastin GTPase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122091287-2	chr5	122091187	122091387	+	822.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9664.0	NM_010861	17906.0	Mm.1529	NM_010861	ENSMUSG00000013936	Myl2	MLC-2|MLC-2s/v|MLC-2v|Mlc2v|Mylpc	myosin, light polypeptide 2, regulatory, cardiac, slow	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-172413301-2	chr2	172413201	172413401	+	632.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080820, intron 1 of 6)	intron (NM_001080820, intron 1 of 6)	19507.0	NM_001276423	320664.0	Mm.210195	NM_001033538	ENSMUSG00000074570	Cass4	F730031O20Rik	Cas scaffolding protein family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-136073902-2	chr5	136073802	136074002	+	653.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-10014.0	NM_133914	54153.0	Mm.290655	NM_133914	ENSMUSG00000004952	Rasa4	AA793972|AW112107|BB079060|CAPRI|GAPL	RAS p21 protein activator 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-58055554-2	chr2	58055454	58055654	+	956.416626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2802.0	NM_029972	77767.0	Mm.91712	NM_029972	ENSMUSG00000026830	Ermn	A330104H05Rik|AI854460|ermin|mKIAA1189	ermin, ERM-like protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-67657895-3	chr11	67657803	67658003	+	842.111145	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109657, intron 5 of 13)	intron (NM_001109657, intron 5 of 13)	-37423.0	NM_009038	19674.0	Mm.439726	NM_009038	ENSMUSG00000020907	Rcvrn	CAR|S-modulin	recoverin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-112678684-4	chr12	112678535	112678735	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001100460)	promoter-TSS (NM_001100460)	-205.0	NM_001100460	382639.0	Mm.11350	NM_001100460	ENSMUSG00000037638	Zbtb42	EG382639|Gm5188|simiRP58	zinc finger and BTB domain containing 42	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-46473933-5	chr18	46473864	46474064	+	835.200012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	U6|snRNA|snRNA	-8148.0	NR_045438	72076.0	Mm.82766	NM_028086		Mospd4	2010013H21Rik	motile sperm domain containing 4	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-120578802-3	chr9	120578664	120578864	+	873.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_073359)	TTS (NR_073359)	1433.0	NR_073359	76100.0	Mm.48212	NR_073359	ENSMUSG00000052658	5830454E08Rik	-	RIKEN cDNA 5830454E08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-16142193-2	chr19	16142093	16142293	+	594.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008139, intron 1 of 6)	intron (NM_008139, intron 1 of 6)	9362.0	NM_008139	14682.0	Mm.439701	NM_008139	ENSMUSG00000024639	Gnaq	1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI	guanine nucleotide binding protein, alpha q polypeptide	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-87017234-4	chr3	87017147	87017347	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-17907.0	NM_007639	12479.0	Mm.1894	NM_007639	ENSMUSG00000028076	Cd1d1	AI747460|CD1.1|Cd1a|Cd1d|Ly-38	CD1d1 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-153155080-2	chr2	153154980	153155180	+	743.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	U6|snRNA|snRNA	-6221.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	-0.822462705120757	-0.812556056629881	-0.815976647844307	-0.818416662570211	-0.546430838844095	-0.809717413752937	-0.815278756332027	-0.175246647052055	3.16603683725386	0.281247844440664	1
Merged-chr11-116457918-1	chr11	116457818	116458018	+	564.0	f1_c57bl6.idr	Intergenic	Intergenic	-3571.0	NM_001033267	217341.0	Mm.387352	NM_001033267	ENSMUSG00000070331	Qrich2	Gm66	glutamine rich 2	protein-coding	-0.177560838546316	-0.527772163248269	-0.531222708449906	-0.53387594443953	-0.397249173534602	-0.526992564702035	0.0293025643331209	-0.533412996382107	1.05424126063864	0.690791320729613	1
Merged-chr17-36271819-4	chr17	36271721	36271921	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178281)	promoter-TSS (NM_178281)	183.0	NM_024468	79263.0	Mm.40624	NM_024468	ENSMUSG00000045409	Trim39	1100001D15Rik|E130103K13Rik|RBCC-B30.2|Rnf23|mKIAA4179|tfp	tripartite motif-containing 39	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-183979990-4	chr1	183979894	183980094	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54004.0	NM_028516	73363.0	Mm.50115	NM_028516	ENSMUSG00000044854	1700056E22Rik	-	RIKEN cDNA 1700056E22 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-125268221-3	chr5	125268126	125268326	+	859.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	72868.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-25209049-4	chr12	25208951	25209151	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	79877.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-96474850-4	chr15	96474800	96475000	+	796.93335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14057.0	NM_028148	72193.0	Mm.324474	NM_028148	ENSMUSG00000033228	Scaf11	1110061H03Rik|2610510E10Rik|AI462454|CASP11|SIP1|SRRP129|Sfrs2ip|Srsf2ip|mKIAA3013	SR-related CTD-associated factor 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91611426-4	chr16	91611323	91611523	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7576.0	NM_001099738	246738.0	Mm.101927	NM_138664	ENSMUSG00000039763	Dnajc28	BC020175|ORF28	DnaJ heat shock protein family (Hsp40) member C28	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52623694-2	chr13	52623594	52623794	+	925.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011518, intron 6 of 13)	intron (NM_011518, intron 6 of 13)	26812.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-114926514-2	chr6	114926414	114926614	+	791.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356371, intron 2 of 5)	intron (NM_001356371, intron 2 of 5)	-4693.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-89939638-3	chr1	89939526	89939726	+	793.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8450.0	NM_010262	14472.0	Mm.204730	NM_010262	ENSMUSG00000034486	Gbx2	D130058E05Rik|Gbx-2|MMoxA|Stra7	gastrulation brain homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-9991867-2	chr19	9991763	9991963	+	758.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_011913, intron 5 of 11)	MIR|SINE|MIR	9217.0	NM_010239	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	1.21261543442621	2.10917405131506	2.03808608001325	1.98102677545055	2.30565668143167	2.76604499691403	2.18470667421747	1.84876481909181	1.10899847390853	0.248156717359935	0.74758343357745
Merged-chr7-5081022-2	chr7	5080922	5081122	+	647.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252454, intron 1 of 10)	MIRb|SINE|MIR	787.0	NM_001252454	13854.0	Mm.3091	NM_010147	ENSMUSG00000035203	Epn1	AA269831|Ibp1	epsin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-49212002-2	chr13	49211902	49212102	+	655.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026738, intron 1 of 5)	intron (NM_026738, intron 1 of 5)	4024.0	NM_026738	68480.0	Mm.3336	NM_026738	ENSMUSG00000037960	Card19	1110007C09Rik|AI851695|Bincard	caspase recruitment domain family, member 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26469048-2	chr17	26468947	26469147	+	966.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39425.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	1.15959488661443	0.461761931775188	1.48073104709628	0.443611418568293	0.43221442483795	0.464041068615312	0.832490677005877	0.936088237082738	-1.3804174544257	0.430580507907848	0.904223090525788
Merged-chr13-21721952-4	chr13	21721873	21722073	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178200)	promoter-TSS (NM_178200)	-71.0	NM_178200	319186.0	Mm.277425	NM_178200	ENSMUSG00000114279	Hist1h2bm	H2b-291b	histone cluster 1, H2bm	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-89261540-2	chr9	89261440	89261640	+	732.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR72_RN|LTR|ERV1	50156.0	NM_001359993	107885.0	Mm.486274	NM_026829	ENSMUSG00000066442	Mthfs	1110034I12Rik|2310020H23Rik|AI119695	5, 10-methenyltetrahydrofolate synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-13160398-2	chr8	13160298	13160498	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010684, intron 1 of 8)	B1_Mur2|SINE|Alu	1237.0	NM_010684	16783.0	Mm.16716	NM_010684	ENSMUSG00000031447	Lamp1	CD107a|LGP-120|LGP-A|Lamp-1|P2B|Perk	lysosomal-associated membrane protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-152538172-2	chr1	152538072	152538272	+	881.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 10 of 17)	intron (NM_016846, intron 10 of 17)	87045.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126928142-2	chr7	126928042	126928242	+	759.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172747)	promoter-TSS (NM_172747)	-737.0	NM_172747	233877.0	Mm.245897	NM_172747	ENSMUSG00000030685	Kctd13	1500003N18Rik|AV259508|PDIP1alpha|Pdip1|Poldip1	potassium channel tetramerisation domain containing 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-73001078-2	chr9	73000978	73001178	+	714.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359295, intron 4 of 9)	B1_Mur2|SINE|Alu	15574.0	NM_001286544	72278.0	Mm.268475	NM_028181	ENSMUSG00000034563	Ccpg1	1700030B06Rik|1810073J13Rik|9430028F23Rik|AI426686|AI875170|CPR8|D9Ertd392e	cell cycle progression 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16491918-3	chr7	16491812	16492012	+	887.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15132.0	NM_008718	18142.0	Mm.145821	NM_008718	ENSMUSG00000001988	Npas1	MOP5|bHLHe11	neuronal PAS domain protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-32724662-4	chr12	32724548	32724748	+	984.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-95687.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-94374402-2	chr11	94374302	94374502	+	997.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029600, intron 4 of 30)	intron (NM_029600, intron 4 of 30)	18574.0	NM_029600	76408.0	Mm.23942	NM_029600	ENSMUSG00000020865	Abcc3	1700019L09Rik|ABC31|MLP2|MOAT-D|MRP3	ATP-binding cassette, sub-family C (CFTR/MRP), member 3	protein-coding	0.00734994361756211	0.0262144236740932	0.718264590320099	0.763057259027563	0.295296112391778	0.0275983276192905	0.0214197790085633	0.0161288104603589	-2.54072157478469	0.256904079870962	1
Merged-chr2-157840743-4	chr2	157840651	157840851	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025680, intron 11 of 15)	intron (NM_025680, intron 11 of 15)	-73902.0	NM_198627	277432.0	Mm.441156	NM_198627	ENSMUSG00000037843	Vstm2l	Gm691	V-set and transmembrane domain containing 2-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-65696143-2	chr5	65696043	65696243	+	893.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081321, intron 2 of 31)	intron (NM_001081321, intron 2 of 31)	1713.0	NM_001081321	71521.0	Mm.278974	NM_027818	ENSMUSG00000029202	Pds5a	9030416H16Rik|E230024D05Rik|mKIAA0648	PDS5 cohesin associated factor A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-42674975-3	chr15	42674890	42675090	+	810.666626	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286062, intron 1 of 8)	intron (NM_001286062, intron 1 of 8)	1987.0	NM_001286062	11600.0	Mm.309336	NM_009640	ENSMUSG00000022309	Angpt1	1110046O21Rik|Ang-1|Ang1	angiopoietin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-46342493-4	chr17	46342389	46342589	+	840.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-14466.0	NM_170680	224814.0	Mm.76543	NM_145140	ENSMUSG00000032842	Abcc10	Mrp7|mFLJ00002	ATP-binding cassette, sub-family C (CFTR/MRP), member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-151953733-4	chr1	151953643	151953843	+	852.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197990, intron 3 of 5)	intron (NM_197990, intron 3 of 5)	136577.0	NM_197990	69399.0	Mm.278031	NM_197990	ENSMUSG00000032666	1700025G04Rik	2610510E02Rik|2900042O04Rik	RIKEN cDNA 1700025G04 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-61652683-2	chr11	61652583	61652783	+	666.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027817)	promoter-TSS (NM_027817)	-638.0	NM_027817	71520.0	Mm.202760	NM_027817	ENSMUSG00000004837	Grap	8430435N19Rik|BB233594	GRB2-related adaptor protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-13254286-2	chr16	13254186	13254386	+	883.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT2B3|LTR|ERVL	-2195.0	NM_001122667	239719.0	Mm.270643	NM_153588	ENSMUSG00000009569	Mkl2	Gt4-1|MRTF-B|Mrtfb|mKIAA1243	MKL/myocardin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-38690779-4	chr6	38690674	38690874	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27705.0	NM_001101507	665180.0	Mm.349066	NM_001101507	ENSMUSG00000079598	Clec2l	AI414054|AW122724|Gm1064	C-type lectin domain family 2, member L	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-124020545-1	chr8	124020445	124020645	+	758.0	f1_balb.idr	intron (NM_133966, intron 1 of 4)	B1F|SINE|Alu	511.0	NM_001357315	102162.0	Mm.291777	NM_133966	ENSMUSG00000038697	Taf5l	1110005N04Rik|AI849020	TATA-box binding protein associated factor 5 like	protein-coding	0.740801054052744	0.468003561645093	0.256878689620041	0.251161545414631	0.243038418793168	0.917228651920179	0.971193927818494	0.252162129317517	1.19592553842984	0.535242007964688	1
Merged-chr14-65389888-4	chr14	65389794	65389994	+	875.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199029, intron 4 of 9)	intron (NM_199029, intron 4 of 9)	31218.0	NM_199029	380912.0	Mm.270087	NM_199029	ENSMUSG00000034522	Zfp395	BC053701|Gm910	zinc finger protein 395	protein-coding	-0.368796203330916	-0.420975920039586	-0.589981489045211	-0.591919030803647	-0.26952948213359	-0.41702145550921	-0.589424289208965	-0.591581847455882	0.409282076590067	0.872744466216116	1
Merged-chr12-25209681-2	chr12	25209567	25209767	+	625.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	80493.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	1.67912856869119	2.43957257533696	1.6837034973607	2.42932638044566	1.4150283299752	1.58021162308601	1.52867727416014	1.06354472252185	-2.15892038734838	0.0471252022126779	0.314581700378919
Merged-chr10-123371956-2	chr10	123371856	123372056	+	650.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252387, intron 1 of 4)	intron (NM_001252387, intron 1 of 4)	107880.0	NM_001252387	268354.0	Mm.51939	NM_182807	ENSMUSG00000044071	Fam19a2	6330575M02|FAM19A2 TAFA-2|Sam2|TAFA2|Tafa-2	family with sequence similarity 19, member A2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-34803701-2	chr2	34803601	34803801	+	922.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_013890)	TTS (NM_013890)	-3789.0	NM_145522	227746.0	Mm.158705	NM_145522	ENSMUSG00000070953	Rabepk	8430412M01Rik|9530020D24Rik|AV073337|C87311|Rab9p40	Rab9 effector protein with kelch motifs	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-103353420-2	chr12	103353320	103353520	+	603.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023049, intron 1 of 9)	intron (NM_023049, intron 1 of 9)	2581.0	NM_023049	65256.0	Mm.27159	NM_023049	ENSMUSG00000021200	Asb2	1110008E15Rik	ankyrin repeat and SOCS box-containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-123528847-5	chr9	123528685	123528885	+	834.266663	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030692)	promoter-TSS (NM_030692)	-968.0	NM_001357485	83493.0	Mm.273671	NM_030692	ENSMUSG00000025240	Sacm1l	SAC1|Sac1p|mKIAA0851	SAC1 suppressor of actin mutations 1-like (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-117429139-3	chr7	117429043	117429243	+	720.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175645, intron 1 of 11)	MER74B|LTR|ERVL	48164.0	NM_175645	233781.0	Mm.461427	NM_175645	ENSMUSG00000030657	Xylt1	8030490L12	xylosyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-54799906-2	chr15	54799806	54800006	+	610.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53978.0	NM_010930	18133.0	Mm.5167	NM_010930	ENSMUSG00000037362	Nov	C130088N23Rik|CCN3	nephroblastoma overexpressed gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-140611202-4	chr5	140611093	140611293	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008494, intron 1 of 7)	intron (NM_008494, intron 1 of 7)	3852.0	NM_008494	16848.0	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-115593419-2	chr6	115593319	115593519	+	983.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001101431)	promoter-TSS (NM_001101431)	-843.0	NM_001101431	70291.0	Mm.133694	NM_001101431	ENSMUSG00000068011	Mkrn2os	2510049J12Rik	makorin, ring finger protein 2, opposite strand	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-66848251-2	chr15	66848151	66848351	+	879.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009375, intron 46 of 47)	intron (NM_009375, intron 46 of 47)	-16422.0	NM_009192	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-115628253-4	chr11	115628166	115628366	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026071)	promoter-TSS (NM_026071)	29.0	NM_001252394	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-53787539-4	chr1	53787445	53787645	+	911.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-2330.0	NM_133810	98267.0	Mm.25559	NM_133810	ENSMUSG00000026094	Stk17b	3110009A03Rik|AI120141|Drak2	serine/threonine kinase 17b (apoptosis-inducing)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-78508467-4	chr8	78508379	78508579	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029736)	promoter-TSS (NM_029736)	89.0	NM_001358975	19656.0	Mm.24718	NM_009033	ENSMUSG00000037070	Rbmxl1	Hnrpg|Rbmx|Rbmxrt	RNA binding motif protein, X-linked like-1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-97931164-2	chr3	97931064	97931264	+	721.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033779, intron 1 of 1)	intron (NM_001033779, intron 1 of 1)	991.0	NM_001033779	433632.0	Mm.212421	NM_001033779		Gm5544	EG433632	predicted gene 5544	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80610232-2	chr10	80610132	80610332	+	549.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_105877)	TTS (NR_105877)	972.0	NR_105877	102465550.0		NR_105877	ENSMUSG00000099283	Mir6912	Gm27990|mmu-mir-6912	microRNA 6912	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-57776946-2	chr1	57776846	57777046	+	577.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144882, intron 1 of 13)	intron (NM_144882, intron 1 of 13)	2085.0	NM_144882	67198.0	Mm.159989	NM_144882	ENSMUSG00000038305	Spats2l	2810022L02Rik|A230104H11Rik|AA987173|AI480531|AI842453|AW413586	spermatogenesis associated, serine-rich 2-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-95281386-2	chr3	95281286	95281486	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173347, intron 1 of 7)	CpG	690.0	NM_173347	229589.0	Mm.14155	NM_173347	ENSMUSG00000015711	Prune1	9230112O05Rik|C130058A12|DRES-17|HTCD37|PRUNEM1|Prune|Prune-M1	prune exopolyphosphatase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-152736226-4	chr2	152736107	152736307	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010495)	promoter-TSS (NM_010495)	-44.0	NM_010495	15901.0	Mm.444	NM_010495	ENSMUSG00000042745	Id1	AI323524|D2Wsu140e|Idb1|bHLHb24	inhibitor of DNA binding 1	protein-coding	4.745461413098	5.36358539142672	5.5820438265073	4.97586439580095	5.20360407926893	5.13964286319325	4.81470531932365	5.28737906344727	-0.0842992434531326	0.791317085963562	0.998431161219273
Merged-chr6-146762488-4	chr6	146762364	146762564	+	825.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172734, intron 3 of 13)	MER102b|DNA|hAT-Charlie	37534.0	NM_172734	232533.0	Mm.322121	NM_172734	ENSMUSG00000001630	Stk38l	4930473A22Rik|Ndr2|Ndr54	serine/threonine kinase 38 like	protein-coding	2.30766050175074	1.29348096012683	1.04857283437454	2.00328136644724	0.97750004977768	0.831554294727361	0.812219628552968	1.37282149488858	-2.68843343581607	0.0447198311115262	0.304266761145956
Merged-chr11-3895232-4	chr11	3895144	3895344	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026150)	promoter-TSS (NM_026150)	4.0	NM_173745	75219.0	Mm.32588	NM_173745	ENSMUSG00000047205	Dusp18	4930527G07Rik|AI430870|BB028064|DSP18|DUSP20|LMWDSP20	dual specificity phosphatase 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16980553-2	chr7	16980500	16980700	+	644.1999509999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13988.0	NM_001101535	434130.0	Mm.459162	NM_001101535	ENSMUSG00000041117	Ccdc8	-	coiled-coil domain containing 8	protein-coding	-1.84303373260285	-1.81303463126392	-1.82210660711932	-1.82955859819738	-1.84092785115721	-1.81106869625141	-1.8200529106377	-1.54273750312762	1.50114612804783	0.670102668014672	1
Merged-chr11-69086825-2	chr11	69086725	69086925	+	765.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1703.0	NM_009497	22318.0	Mm.28643	NM_009497	ENSMUSG00000020894	Vamp2	Syb-2|Syb2|Vamp-2|sybII	vesicle-associated membrane protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-24996935-2	chr19	24996835	24997035	+	610.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2594.0	NM_028785	76088.0	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	-1.8418762459921	-1.8125357239735	-1.82140854000656	-1.82869693527674	-1.56059678980999	-1.8106129477253	-1.81939992894326	-1.82739231600805	1.3620893379502	0.699511506488145	1
Merged-chr19-44389174-2	chr19	44389069	44389269	+	857.0	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	18540.0	NM_009127	20249.0	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	2.94995975882521	3.30445168351526	2.99087446633322	3.49710731427851	3.06066893489529	3.42133448970919	3.01419689659056	3.51410704861093	0.108982754526047	0.852195386182862	0.998431161219273
Merged-chr13-102656501-2	chr13	102656401	102656601	+	921.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37046.0	NM_001360519	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-5792676-4	chr11	5792565	5792765	+	994.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146309, intron 2 of 12)	intron (NM_001146309, intron 2 of 12)	4182.0	NM_013810	13169.0	Mm.256925	NM_013810	ENSMUSG00000020476	Dbnl	Abp1|SH3P7|mAbp1	drebrin-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3791233-3	chr12	3791162	3791362	+	825.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15718.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-43751080-4	chr10	43750982	43751182	+	915.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040581, intron 1 of 3)	intron (NR_040581, intron 1 of 3)	4924.0	NR_040581	69443.0	Mm.484042	NR_040581	ENSMUSG00000111422	1700027J07Rik	-	RIKEN cDNA 1700027J07 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-99132576-4	chr11	99132474	99132674	+	899.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22503.0	NM_001301713	12775.0	Mm.2932	NM_007719	ENSMUSG00000037944	Ccr7	CC-CKR-7|CCR-7|CD197|Cdw197|Cmkbr7|EBI1|Ebi1h	chemokine (C-C motif) receptor 7	protein-coding	4.02816704224819	3.61813513225786	3.7457270848426	3.84821650280343	4.05857474328801	3.64433517131737	3.7741198852601	3.8670503332683	0.0377564608520727	0.93520538997627	0.998431161219273
Merged-chr3-109251980-4	chr3	109251890	109252090	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-88693.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-146416516-1	chr2	146416416	146416616	+	558.0	f0_c57.idr	intron (NM_001033348, intron 16 of 40)	intron (NM_001033348, intron 16 of 40)	95488.0	NM_001033348	241694.0	Mm.222310	NM_001033348	ENSMUSG00000037110	Ralgapa2	A230067G21Rik|AS250|BC053994|RGC2|pp250	Ral GTPase activating protein, alpha subunit 2 (catalytic)	protein-coding	2.04382167392505	1.95387557755745	2.55042996503603	1.69861862932466	1.7548706728126	1.81933733850335	1.59547998178991	1.14429461407901	-1.44916343184413	0.162368777470932	0.624046739382046
Merged-chr14-75066106-4	chr14	75066002	75066202	+	885.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030568, intron 2 of 3)	intron (NR_030568, intron 2 of 3)	50075.0	NM_198642	271221.0	Mm.320280	NM_198642	ENSMUSG00000034959	Rubcnl	5031414D18Rik|Gm744|Gm911|Kiaa0226l	RUN and cysteine rich domain containing beclin 1 interacting protein like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-164517999-3	chr2	164517896	164518096	+	849.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20471.0	NM_133779	78928.0	Mm.28228	NM_133779	ENSMUSG00000017721	Pigt	2510012P17Rik|4930534E15Rik|CGI-06|NDAP|Ndap7	phosphatidylinositol glycan anchor biosynthesis, class T	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-20362369-3	chr19	20362263	20362463	+	666.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28308.0	NM_010730	16952.0	Mm.248360	NM_010730	ENSMUSG00000024659	Anxa1	Anx-1|Anx-A1|C430014K04Rik|Lpc-1|Lpc1	annexin A1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-85432878-4	chr8	85432773	85432973	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025722)	promoter-TSS (NM_025722)	-32.0	NM_025722	66714.0	Mm.272748	NM_025722	ENSMUSG00000036934	4921524J17Rik	-	RIKEN cDNA 4921524J17 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-50996061-3	chr17	50995941	50996141	+	739.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028162, intron 3 of 21)	intron (NM_028162, intron 3 of 21)	163337.0	NM_001285993	72238.0	Mm.120650	NM_028162	ENSMUSG00000023923	Tbc1d5	1600014N05Rik	TBC1 domain family, member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120184549-1	chr11	120184449	120184649	+	541.0	f1_c57bl6.idr	Intergenic	Intergenic	5307.0	NR_030682	100042332.0	Mm.269766	NR_030682		2810410L24Rik	-	RIKEN cDNA 2810410L24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-101828300-2	chr2	101828200	101828400	+	554.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355625, intron 1 of 8)	intron (NM_001355625, intron 1 of 8)	10680.0	NM_001110849	72446.0	Mm.24138	NM_175181	ENSMUSG00000032841	Prr5l	2600010E01Rik|4833411O04Rik|Protor-2|Protor2	proline rich 5 like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-45753790-2	chr17	45753690	45753890	+	697.166687	f1_balb.idr|f1_c57bl6.idr	intron (NR_152153, intron 2 of 4)	IMPB_01|Satellite|Satellite	19284.0	NR_152153	433111.0	Mm.213441	NR_152153	ENSMUSG00000097727	F630040K05Rik	-	RIKEN cDNA F630040K05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-79831777-3	chr7	79831687	79831887	+	886.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008486, intron 15 of 20)	HAL1|LINE|L1	16423.0	NM_008486	16790.0	Mm.4487	NM_008486	ENSMUSG00000039062	Anpep	AP-M|AP-N|Apn|Cd13|P150	alanyl (membrane) aminopeptidase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-56108853-2	chr10	56108753	56108953	+	634.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163833, intron 1 of 1)	MTEa|LTR|ERVL-MaLR	1936.0	NM_001163833	73390.0	Mm.181475	NM_133751	ENSMUSG00000047669	Msl3l2	1700060H10Rik	MSL3 like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-35093829-3	chr7	35093730	35093930	+	780.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT2B4|LTR|ERVL	-25463.0	NM_001287521	12606.0	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-28827095-2	chr6	28826995	28827195	+	756.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019776, intron 16 of 23)	intron (NM_019776, intron 16 of 23)	4652.0	NM_138682	192198.0	Mm.443660	NM_138682	ENSMUSG00000049939	Lrrc4	MBAG1|NGL-2|NGL2|NLG-2|Nag14	leucine rich repeat containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117043789-2	chr11	117043689	117043889	+	946.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32994.0	NR_027059	76972.0	Mm.309167	NR_027059	ENSMUSG00000086859	Snhg20	2810008D09Rik	small nucleolar RNA host gene 20	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-77506721-3	chr8	77506624	77506824	+	854.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030113, intron 1 of 22)	intron (NM_030113, intron 1 of 22)	-10332.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-26570036-2	chr17	26569929	26570129	+	779.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026170, intron 1 of 9)	intron (NM_026170, intron 1 of 9)	8517.0	NM_026170	67458.0	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	-0.371209252440364	-0.355126444827776	-0.360361366948729	-0.364422640311784	-0.370196101534659	-0.353950844213183	0.567679470802302	0.107986669072213	3.85287224097428	0.126391850998806	1
Merged-chr1-164248913-4	chr1	164248813	164249013	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_054087)	promoter-TSS (NM_054087)	-133.0	NM_001276455	116914.0	Mm.35444	NM_054087	ENSMUSG00000040918	Slc19a2	AV276020|AW322295|DDA1|THTR1|TRMA|ThTr-1	solute carrier family 19 (thiamine transporter), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-59550874-2	chr9	59550774	59550974	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010421, intron 1 of 13)	B4A|SINE|B4	11334.0	NM_010421	15211.0	Mm.2284	NM_010421	ENSMUSG00000025232	Hexa	Hex-1	hexosaminidase A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83032893-4	chr6	83032833	83033033	+	910.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001291799, exon 2 of 5)	exon (NM_001291799, exon 2 of 5)	538.0	NM_010070	13448.0	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	3.04656863278337	2.04344173192939	2.46845210801982	2.82840702164638	3.07148456835061	2.42722068242436	1.48877795556153	3.40285110682424	0.261862162564489	0.755075543282876	0.998431161219273
Merged-chr14-77035903-1	chr14	77035803	77036003	+	987.0	f1_balb.idr	promoter-TSS (NM_001310648)	promoter-TSS (NM_001310648)	714.0	NM_172488	210808.0	Mm.89278	NM_172488	ENSMUSG00000044350	Lacc1	9030625A04Rik	laccase domain containing 1	protein-coding	2.27746081692575	2.0514816625736	0.887929735030336	1.44184691872513	1.71814064157183	1.38303180988599	0.892479211147451	0.874601764477701	-1.57753449497082	0.234141024795124	0.730047821073777
Merged-chr11-106091372-2	chr11	106091272	106091472	+	619.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011947, intron 1 of 15)	intron (NM_011947, intron 1 of 15)	6470.0	NM_011947	26406.0	Mm.27041	NM_011947	ENSMUSG00000020700	Map3k3	AW548911|MAPKKK3|Mekk3|mKIAA4031	mitogen-activated protein kinase kinase kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101658481-4	chr11	101658399	101658599	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7042.0	NM_025404	80981.0	Mm.266840	NM_025404	ENSMUSG00000034936	Arl4d	1110036H21Rik|ARL6|AW456149|Arf4l|Arfl4|Arl5	ADP-ribosylation factor-like 4D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-84969141-3	chr12	84969065	84969265	+	960.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178065, intron 1 of 19)	intron (NM_178065, intron 1 of 19)	1721.0	NM_178065	68497.0	Mm.24446	NM_178065	ENSMUSG00000042350	Arel1	1110018G07Rik|AI649076|AW610792|Kiaa0317|mKIAA0317	apoptosis resistant E3 ubiquitin protein ligase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35916632-7	chr17	35916564	35916764	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163818)	promoter-TSS (NM_001163818)	-224.0	NM_001361454	66973.0	Mm.29484	NM_025878	ENSMUSG00000024436	Mrps18b	2400002C15Rik|MRP-S18-2|S18mt-b	mitochondrial ribosomal protein S18B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-92693354-4	chr16	92693254	92693454	+	861.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111022, intron 3 of 6)	intron (NM_001111022, intron 3 of 6)	3975.0	NM_001111023	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-15850096-3	chr3	15849987	15850187	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1600.0	NM_001173459	100038947.0	Mm.330924	NM_001173459	ENSMUSG00000074677	LOC100038947	-	signal-regulatory protein beta 1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-72412463-4	chr4	72412229	72412429	+	892.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	211085.0	NR_027923	68285.0	Mm.37541	NR_027923		C630043F03Rik	AI851307	RIKEN cDNA C630043F03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-105142208-4	chr14	105142114	105142314	+	914.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134077, intron 11 of 20)	MTC|LTR|ERVL-MaLR	-27538.0	NR_040628	100502987.0	Mm.124957	NR_040628		Gm17066	-	predicted gene 17066	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84420162-1	chr8	84420062	84420262	+	603.0	f1_balb.idr	intron (NM_001252060, intron 1 of 47)	Tigger5b|DNA|TcMar-Tigger	4798.0	NM_001252061	12286.0	Mm.334658	NM_007578	ENSMUSG00000034656	Cacna1a	APCA|BI|Caca1a|Cacnl1a4|Cav2.1|Ccha1a|EA2|FHM|HPCA|MHP|MHP1|SCA6|alpha1A|la|nmf352|rkr|smrl|tg	calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	protein-coding	0.230078101058054	0.268562642126419	0.256292914071133	0.468269654046213	1.39991827318738	0.271286593185958	0.259025786094717	1.58493262497518	3.98537719081055	0.0365013987503035	0.271116662529597
Merged-chr4-144898228-5	chr4	144898041	144898241	+	919.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357274, intron 2 of 6)	intron (NM_001357274, intron 2 of 6)	5004.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-77844207-2	chr18	77844107	77844307	+	928.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013831, intron 2 of 14)	intron (NM_013831, intron 2 of 14)	-47817.0	NR_152167	619308.0	Mm.490456	NM_001033812		F830208F22Rik	-	RIKEN cDNA F830208F22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-106685106-4	chr9	106684952	106685152	+	835.349976	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104459, intron 1 of 4)	intron (NR_104459, intron 1 of 4)	764.0	NM_011573	21767.0	Mm.22266	NM_011573	ENSMUSG00000040813	Tex264	TEG-264	testis expressed gene 264	protein-coding	3.30002365182001	3.62836416767223	4.95739871930361	4.16279486670579	3.84507674074631	2.60474991338034	2.98683091874641	3.12567344630494	-1.33662131255881	0.0234192036976937	0.199846092435938
Merged-chr4-135353676-3	chr4	135353538	135353738	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001130477)	promoter-TSS (NM_001130477)	-424.0	NM_001130477	51796.0	Mm.1963	NM_016799	ENSMUSG00000028809	Srrm1	AA407769|POP101|Srm160	serine/arginine repetitive matrix 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-32963023-2	chr2	32962903	32963103	+	885.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_002898)	promoter-TSS (NR_002898)	-298.0	NR_002898	104367.0	Mm.250030	NR_002898	ENSMUSG00000065124	Snora65	MBII-351|Rnu65	small nucleolar RNA, H/ACA box 65	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-166650636-4	chr2	166650529	166650729	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	63203.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-40757936-4	chr9	40757832	40758032	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133733, intron 1 of 6)	intron (NM_133733, intron 1 of 6)	-43341.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	4.38210298024973	4.72927567567682	4.88137999958423	3.87504480149271	4.28238348169576	4.94127546142878	4.79528068275076	4.43702817049706	0.148928735125003	0.704733442335249	0.998431161219273
Merged-chr8-82997066-4	chr8	82996969	82997169	+	949.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177378, intron 2 of 6)	intron (NM_177378, intron 2 of 6)	133713.0	NM_177378	330812.0	Mm.491438	NM_177378	ENSMUSG00000047747	Rnf150	A630007N06Rik|C030044C12Rik|Greul5|mKIAA1214	ring finger protein 150	protein-coding	2.51957416747489	2.69392334439085	3.69194845491861	2.9164145549933	3.37754820320703	3.69839787582752	3.33505682502986	3.94714374030525	0.918487484933507	0.126541960918796	0.55689342891744
Merged-chr10-98917250-6	chr10	98917194	98917394	+	799.944458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359507, intron 1 of 21)	intron (NM_001359507, intron 1 of 21)	2142.0	NM_026482	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-118071564-4	chr3	118071447	118071647	+	996.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-202611.0	NM_029655	76561.0	Mm.33824	NM_029655	ENSMUSG00000028007	Snx7	2510028H01Rik	sorting nexin 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-70212563-7	chr8	70212407	70212607	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001007570)	promoter-TSS (NM_001007570)	-226.0	NM_001007570	73095.0	Mm.185413	NM_001007570	ENSMUSG00000002346	Slc25a42	2900084M01Rik	solute carrier family 25, member 42	protein-coding	6.47067258270485	6.49634273120471	6.79532101926797	6.28408511591919	6.92225607212993	6.37152286270949	6.64008544911237	5.93203992758798	-0.00523868513720914	0.982049287214516	0.998431161219273
Merged-chr10-86991416-2	chr10	86991315	86991515	+	793.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_138673, intron 3 of 68)	B3|SINE|B2	16527.0	NM_138673	192188.0	Mm.279611	NM_138673	ENSMUSG00000035459	Stab2	FEEL-2|FELL|MFEEL-2|STAB-2	stabilin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-62774502-2	chr1	62774402	62774602	+	777.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077404, intron 12 of 16)	intron (NM_001077404, intron 12 of 16)	20230.0	NR_040601	74992.0	Mm.401979	NR_040601		4930487H11Rik	-	RIKEN cDNA 4930487H11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-93187998-4	chr13	93187899	93188099	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_154997, intron 1 of 15)	intron (NR_154997, intron 1 of 15)	4418.0	NM_001361536	100715.0	Mm.242865	NM_133905	ENSMUSG00000042167	Papd4	8030446C20Rik|AI649009|GLD-2|Gld2	PAP associated domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-119848016-4	chr8	119847892	119848092	+	924.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7413.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-73488528-2	chr14	73488428	73488628	+	631.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21521.0	NM_026119	67381.0	Mm.282888	NM_026119	ENSMUSG00000022109	Med4	2410046H15Rik|DRIP36|HSPC126|TRAP36|Vdirp|Vdrip	mediator complex subunit 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-18242882-2	chr14	18242782	18242982	+	826.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3776.0	NM_011584	353187.0	Mm.26587	NM_011584	ENSMUSG00000021775	Nr1d2	RVR|Rev-erb	nuclear receptor subfamily 1, group D, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-128805396-3	chr2	128805256	128805456	+	868.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-12947.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-121915906-3	chr14	121915775	121915975	+	800.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_182806)	promoter-TSS (NM_182806)	-101.0	NM_182806	110168.0	Mm.37405	NM_182806	ENSMUSG00000050350	Gpr18	-	G protein-coupled receptor 18	protein-coding	0.47481437138252	0.792500338420258	0.146004839112015	0.14251429580315	0.137626512180953	0.713584765934402	0.147007484412476	0.143122197175528	-0.801887510608157	0.71160447175239	1
Merged-chr14-70541139-3	chr14	70541038	70541238	+	978.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4113.0	NM_180588	72549.0	Mm.46742	NM_180588	ENSMUSG00000033589	Reep4	2700029E10Rik	receptor accessory protein 4	protein-coding	1.99152098364867	2.1071237716651	2.16785932306289	1.20866746210869	2.79856999111244	2.12334158750896	1.24160516245389	2.75231458237509	1.0631535839777	0.302479693679403	0.804570949918448
Merged-chr11-5787777-4	chr11	5787699	5787899	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146308)	promoter-TSS (NM_001146308)	-684.0	NM_001146309	13169.0	Mm.256925	NM_013810	ENSMUSG00000020476	Dbnl	Abp1|SH3P7|mAbp1	drebrin-like	protein-coding	4.55627429485424	3.89407450781885	4.42202052172895	2.65902864901524	4.68119628237648	3.3262840370557	4.30453796519843	3.31951900651175	-0.0166934570811054	0.976545061600388	0.998431161219273
Merged-chr11-82867834-3	chr11	82867692	82867892	+	887.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164569, intron 1 of 7)	Tigger14a|DNA|TcMar-Tigger	2952.0	NM_001164570	67338.0	Mm.341608	NM_026097	ENSMUSG00000020696	Rffl	1700051E09Rik|4930516L10Rik|BG080975|Carp2	ring finger and FYVE like domain containing protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-170130040-2	chr2	170129940	170130140	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159683, intron 2 of 6)	intron (NM_001159683, intron 2 of 6)	1180.0	NM_001033299	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45812421-2	chr7	45812321	45812521	+	855.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011181, intron 3 of 11)	intron (NM_011181, intron 3 of 11)	1895.0	NM_011181	19158.0	Mm.272130	NM_011181	ENSMUSG00000003269	Cyth2	ARNO|CLM2|Pscd2	cytohesin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-89909633-3	chr16	89909521	89909721	+	892.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009384, intron 2 of 27)	intron (NM_009384, intron 2 of 27)	51206.0	NM_009384	21844.0	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-35756658-2	chr7	35756558	35756758	+	667.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-2204.0	NM_178704	233115.0	Mm.257808	NM_178704	ENSMUSG00000043671	Dpy19l3	6030410G08|9330164H19Rik	dpy-19-like 3 (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-30995459-3	chr3	30995382	30995582	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008857)	promoter-TSS (NM_008857)	-289.0	NM_008857	18759.0	Mm.291554	NM_008857	ENSMUSG00000037643	Prkci	2310021H13Rik|AI427505|PKClambda|Pkci|Pkcl|Prkcl|aPKClambda|mKIAA4165	protein kinase C, iota	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-7267306-3	chr19	7267223	7267423	+	820.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_054048)	promoter-TSS (NM_054048)	-71.0	NM_054048	104383.0	Mm.283859	NM_054048	ENSMUSG00000024968	Rcor2	1A13|AW122124|CoREST|Rcor|Rcor1	REST corepressor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-75555195-1	chr17	75555095	75555295	+	709.666687	f1_c57bl6.idr	Intergenic	ERVB7_1-LTR_MM|LTR|ERVK	-3249.0	NM_001357860	72722.0	Mm.24641	NM_133747	ENSMUSG00000002017	Fam98a	2810405J04Rik|AL024114	family with sequence similarity 98, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-56336729-4	chr12	56336618	56336818	+	930.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145442, intron 6 of 8)	intron (NM_145442, intron 6 of 8)	9176.0	NM_145442	217588.0	Mm.25656	NM_145442	ENSMUSG00000021028	Mbip	4933408E06Rik	MAP3K12 binding inhibitory protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-105459138-4	chr9	105459011	105459211	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359823, intron 7 of 26)	MER47B|DNA|TcMar-Tigger	36022.0	NM_175025	235574.0	Mm.326247	NM_175025	ENSMUSG00000032570	Atp2c1	1700121J11Rik|ATP2C1A|AW061228|BCPM|D930003G21Rik|HHD|SPCA|pmr1	ATPase, Ca++-sequestering	protein-coding	6.66878797865387	6.91250888612115	7.34613327457768	6.70886377573011	5.96093443762157	6.63844924326788	6.06901402708332	6.37659017791049	-0.698408466835397	0.00176519550440891	0.0304877384768207
Merged-chr7-123030851-2	chr7	123030751	123030951	+	694.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60287.0	NM_175023	19647.0	Mm.4480	NM_011247	ENSMUSG00000030779	Rbbp6	4933422O15Rik|AI316869|BB233631|C030034J04Rik|C77662|P2P-R|PACT	retinoblastoma binding protein 6, ubiquitin ligase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-75909282-4	chr16	75909157	75909357	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023380)	promoter-TSS (NM_023380)	9.0	NM_023380	67742.0	Mm.131406	NM_023380	ENSMUSG00000022876	Samsn1	4930571B16Rik|930571B16Rik|Hacs1|SLy2	SAM domain, SH3 domain and nuclear localization signals, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127166231-1	chr10	127166131	127166331	+	545.0	f1_balb.idr	intron (NM_027739, intron 1 of 9)	CpG	400.0	NM_001358578	14421.0	Mm.386762	NM_008080	ENSMUSG00000006731	B4galnt1	4933429D13Rik|Gal-NAc-T|GalNAc-T|GalNAcT|Galgt1|Ggm-2|Ggm2	beta-1,4-N-acetyl-galactosaminyl transferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-4804230-4	chr18	4804130	4804330	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8256.0	NR_045881	100038439.0	Mm.387569	NR_045881	ENSMUSG00000097043	Gm10556	-	predicted gene 10556	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-31572654-4	chr2	31572542	31572742	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033389)	promoter-TSS (NM_001033389)	-9.0	NM_001033389	320267.0	Mm.207261	NM_001033389	ENSMUSG00000026843	Fubp3	A330051M14Rik|AV006371|FBP3|Marta2	far upstream element (FUSE) binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31376551-4	chr14	31376460	31376660	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347585, intron 6 of 7)	intron (NM_001347585, intron 6 of 7)	39922.0	NM_009796	12339.0	Mm.201535	NM_009796	ENSMUSG00000021893	Capn7	AU022319|PalBH	calpain 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-34047552-2	chr11	34047452	34047652	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010696, intron 1 of 20)	intron (NM_010696, intron 1 of 20)	624.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-128657044-2	chr4	128656944	128657144	+	754.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001195130, intron 1 of 14)	intron (NM_001195130, intron 1 of 14)	2342.0	NM_001195130	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-129494662-2	chr6	129494562	129494762	+	670.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_138648, intron 4 of 7)	MT2A|LTR|ERVL	12503.0	NM_138648	108078.0	Mm.293626	NM_138648	ENSMUSG00000030162	Olr1	LOX-1|SR-EI|Scare1	oxidized low density lipoprotein (lectin-like) receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-105732194-4	chr5	105732080	105732280	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178701, intron 1 of 2)	CpG	31370.0	NM_178701	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	4.81705449173534	4.3867525599342	3.58897536563644	4.24354993189708	4.38674595502764	4.08723580435789	4.33574440123966	3.90419972053833	-0.188584116066378	0.665801038881032	0.992380258859526
Merged-chr5-40953130-3	chr5	40953021	40953221	+	650.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	754570.0	NM_001310592	100972.0	Mm.41555	NM_027295	ENSMUSG00000029128	Rab28	2700023P08Rik|AW496496	RAB28, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-76329487-2	chr14	76329387	76329587	+	813.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	78025.0	NR_152108	72893.0	Mm.233565	NR_152108		2900040C04Rik	-	RIKEN cDNA 2900040C04 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-98772785-3	chr15	98772685	98772885	+	708.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011718, exon 5 of 5)	exon (NM_011718, exon 5 of 5)	5365.0	NM_011718	22410.0	Mm.4709	NM_011718	ENSMUSG00000022996	Wnt10b	Wnt12	wingless-type MMTV integration site family, member 10B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19693618-4	chr7	19693543	19693743	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007469)	promoter-TSS (NM_007469)	-984.0	NM_007469	11812.0	Mm.182440	NM_007469	ENSMUSG00000040564	Apoc1	Apo-CIB|ApoC-IB|apo-CI|apoC-I	apolipoprotein C-I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36617027-4	chr1	36616933	36617133	+	788.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201365, intron 6 of 9)	Lx7|LINE|L1	-23701.0	NM_027957	381337.0	Mm.17413	NM_027957	ENSMUSG00000046337	Fam178b	1700024G10Rik|Gm990	family with sequence similarity 178, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122284351-4	chr5	122284259	122284459	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177242)	promoter-TSS (NM_177242)	-39.0	NM_177242	320717.0	Mm.489670	NM_177242	ENSMUSG00000038582	Pptc7	9130017A15Rik|AA672638|AI848390|TA-PP2C	PTC7 protein phosphatase homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-125694388-2	chr8	125694288	125694488	+	541.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24570.0	NM_028908	74393.0	Mm.41709	NM_028908	ENSMUSG00000050930	Map10	4933403G14Rik|AI835009|mKIAA1383	microtubule-associated protein 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-45998402-6	chr19	45998297	45998497	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198296)	promoter-TSS (NM_198296)	91.0	NM_198296	71617.0	Mm.210949	NM_198296	ENSMUSG00000039901	9130011E15Rik	AI431055|AW050122	RIKEN cDNA 9130011E15 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-25874307-2	chr17	25874207	25874407	+	810.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	X5B_LINE|LINE|CR1	-1193.0	NM_026686	68347.0	Mm.35098	NM_026686	ENSMUSG00000025731	Mettl26	0610011F06Rik	methyltransferase like 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-79580439-4	chr17	79580340	79580540	+	825.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34460.0	NM_201361	381110.0	Mm.209801	NM_201361	ENSMUSG00000036368	Rmdn2	AW061290|Fam82a1|RMD-2|mRMD-2	regulator of microtubule dynamics 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-52627535-2	chr13	52627435	52627635	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011518, intron 7 of 13)	B4A|SINE|B4	30653.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-180120272-4	chr2	180120158	180120358	+	916.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144500, intron 1 of 13)	intron (NM_144500, intron 1 of 13)	892.0	NM_144500	228983.0	Mm.253578	NM_144500	ENSMUSG00000039050	Osbpl2	C130070J12Rik|ORP-2|Orp2|mKIAA0772	oxysterol binding protein-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-101449156-3	chr11	101449046	101449246	+	758.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027320, intron 1 of 6)	RLTR12E|LTR|ERVK	734.0	NM_027320	70110.0	Mm.45558	NM_027320	ENSMUSG00000010358	Ifi35	2010008K16Rik|AW986054|IFP35|ifi-35	interferon-induced protein 35	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-55113594-4	chr15	55113527	55113727	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045093)	promoter-TSS (NR_045093)	-45.0	NR_045093	100503794.0	Mm.360519	NR_045093	ENSMUSG00000053749	Gm9920	-	predicted gene 9920	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81604135-2	chr10	81604035	81604235	+	718.125	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2173.0	NR_030677	268319.0	Mm.131825	NM_001033363	ENSMUSG00000074862	BC025920	-	zinc finger protein pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-121427243-4	chr14	121427108	121427308	+	990.5714109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47978.0	NM_145465	223255.0	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-29253030-4	chr19	29252950	29253150	+	987.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008413, intron 2 of 24)	intron (NM_008413, intron 2 of 24)	1247.0	NM_008413	16452.0	Mm.275839	NM_008413	ENSMUSG00000024789	Jak2	Fd17	Janus kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-88442937-2	chr10	88442837	88443037	+	652.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001004164, intron 19 of 20)	RLTR12B|LTR|ERVK	-16650.0	NM_011517	20962.0	Mm.297977	NM_011517	ENSMUSG00000020059	Sycp3	Cor1|Scp3	synaptonemal complex protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-58544229-4	chr13	58544152	58544352	+	960.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	66625.0	NM_022317	114304.0	Mm.18188	NM_022317	ENSMUSG00000021553	Slc28a3	Cnt3	solute carrier family 28 (sodium-coupled nucleoside transporter), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-32571330-4	chr11	32571277	32571477	+	901.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 2 of 18)	intron (NM_009288, intron 2 of 18)	38111.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99918670-1	chr7	99918570	99918770	+	609.0	f1_balb.idr	TTS (NM_001164258)	TTS (NM_001164258)	59452.0	NM_001164258	446101.0	Mm.440757	NM_001164258	ENSMUSG00000035211	Xrra1	AI449753	X-ray radiation resistance associated 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167935212-2	chr2	167935112	167935312	+	644.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011201, intron 1 of 8)	T-rich|Low_complexity|Low_complexity	2885.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-30148589-4	chr5	30148480	30148680	+	773.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178878, intron 1 of 19)	ID4_|SINE|ID	6400.0	NM_178878	97212.0	Mm.200497	NM_178878	ENSMUSG00000025745	Hadha	C77020|Mtpa	hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase (trifunctional protein), alpha subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-12113993-2	chr15	12113893	12114093	+	767.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3858.0	NM_011767	22763.0	Mm.273496	NM_011767	ENSMUSG00000022201	Zfr	C920030H05Rik	zinc finger RNA binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-122297052-1	chr14	122296952	122297152	+	841.0	f0_balb.idr	intron (NM_029556, intron 1 of 7)	intron (NM_029556, intron 1 of 7)	-63414.0	NR_015532	68245.0	Mm.443285	NR_015532	ENSMUSG00000100585	1700108J01Rik	-	RIKEN cDNA 1700108J01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-20829529-4	chr1	20829442	20829642	+	991.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A0|LTR|ERVL-MaLR	-9230.0	NM_008563	17215.0	Mm.4502	NM_008563	ENSMUSG00000041859	Mcm3	AL033361|C80350|Mcmd|P1|P1-MCM3|p1.m	minichromosome maintenance complex component 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-134619251-4	chr4	134619158	134619358	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207237, intron 2 of 11)	intron (NM_207237, intron 2 of 11)	-51407.0	NR_105829	102465216.0		NR_105829	ENSMUSG00000099289	Mir6403	Gm27992|mmu-mir-6403	microRNA 6403	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-114794099-4	chr9	114793936	114794136	+	878.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027294, intron 2 of 3)	intron (NM_027294, intron 2 of 3)	-12043.0	NM_001252479	102545.0	Mm.35600	NM_133978	ENSMUSG00000032436	Cmtm7	AI481279|Cklfsf7|LNV	CKLF-like MARVEL transmembrane domain containing 7	protein-coding	4.1225819269547	3.22783457271842	3.7009242145334	2.91529946047923	3.73201872996827	3.01028517464047	2.00194899694705	3.55091066272146	-0.529470234138509	0.416897950498804	0.897222495742637
Merged-chr12-85941115-1	chr12	85941015	85941215	+	1000.0	f0_balb.idr	intron (NM_001347395, intron 28 of 32)	intron (NM_001347395, intron 28 of 32)	116165.0	NM_001081423	320244.0	Mm.132172	NM_177114	ENSMUSG00000012609	Ttll5	1700048H13Rik|2310009M18Rik|4930556H18Rik|AI428864|D630041K24Rik|R75373|Stamp|mKIAA0998	tubulin tyrosine ligase-like family, member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-50871416-4	chr15	50871310	50871510	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_032000, intron 1 of 5)	intron (NM_032000, intron 1 of 5)	17639.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-55193776-2	chr16	55193676	55193876	+	640.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3A|LINE|L1	89461.0	NM_178720	239852.0	Mm.245045	NM_178720	ENSMUSG00000064310	Zpld1	9430016A21Rik	zona pellucida like domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-112004330-4	chr13	112004235	112004435	+	935.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	136399.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-93995261-4	chr11	93995166	93995366	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199203)	promoter-TSS (NM_001199203)	-825.0	NM_001199203	70834.0	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-23660445-1	chr17	23660345	23660545	+	564.0	f1_c57bl6.idr	promoter-TSS (NM_153784)	promoter-TSS (NM_153784)	-61.0	NM_153784	212733.0	Mm.59997	NM_153784	ENSMUSG00000043782	Bicdl2	BICDR-2|Ccdc64b	BICD family like cargo adaptor 2	protein-coding	1.45926411468485	2.00522590310599	0.883638192615047	0.86949484943045	2.12790091891811	1.52821785622731	1.47202037920713	0.871984972077682	0.56932737499487	0.675174713928156	0.99440487726309
Merged-chr4-59497990-1	chr4	59497890	59498090	+	559.0	f0_balb.idr	intron (NM_144904, intron 6 of 14)	ORR1D1-int|LTR|ERVL-MaLR	51374.0	NM_178164	230257.0	Mm.331640	NM_144904	ENSMUSG00000028382	Ptbp3	5830471K22Rik|AA407443|AI462022|AW107884|C86549|Rod1	polypyrimidine tract binding protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70207190-2	chr11	70207090	70207290	+	703.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15-int|LTR|ERVL	-6720.0	NM_153081	216867.0	Mm.289238	NM_153081	ENSMUSG00000040938	Slc16a11	AB041591|MCT 11|MNCb-2717	solute carrier family 16 (monocarboxylic acid transporters), member 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-150750289-3	chr2	150750178	150750378	+	987.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355068, intron 1 of 13)	intron (NM_001355068, intron 1 of 13)	1197.0	NM_172117	12497.0	Mm.275524	NM_172117	ENSMUSG00000033068	Entpd6	2700026H11Rik|Cd39l2|NTPDase-6	ectonucleoside triphosphate diphosphohydrolase 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167146102-3	chr2	167146003	167146203	+	856.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008420, intron 1 of 1)	B3|SINE|B2	42715.0	NM_008420	16500.0	Mm.205341	NM_008420	ENSMUSG00000050556	Kcnb1	Kcr1-1|Kv2.1|Shab	potassium voltage gated channel, Shab-related subfamily, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120620449-4	chr8	120620344	120620544	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001308449, intron 2 of 3)	intron (NM_001308449, intron 2 of 3)	13938.0	NM_197988	68918.0	Mm.473736	NM_197988	ENSMUSG00000043687	1190005I06Rik	-	RIKEN cDNA 1190005I06 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-115769001-2	chr3	115768901	115769101	+	890.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53946.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-29170227-8	chr7	29170205	29170405	+	944.0104369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_182696)	promoter-TSS (NM_182696)	95.0	NM_182694	243897.0	Mm.389886	NM_182694	ENSMUSG00000031493	Ggn	AI593290	gametogenetin	protein-coding	3.40733559054934	4.17598891920848	3.23985604121108	2.852176989943	2.60973819447551	2.80319483367975	2.84024094002612	2.8674022920677	-1.22807145225902	0.0524222868552093	0.334910861389138
Merged-chr7-101302782-3	chr7	101302692	101302892	+	830.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001111111)	promoter-TSS (NM_001111111)	-704.0	NR_152152	73683.0	Mm.275744	NM_001111111	ENSMUSG00000047767	Atg16l2	2410118P20Rik	autophagy related 16-like 2 (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-35271442-1	chr17	35271342	35271542	+	649.0	f1_balb.idr	Intergenic	Intergenic	8319.0	NM_001267808	14980.0	Mm.439675	NM_001267808		H2-L	H-2L	histocompatibility 2, D region locus L	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-56880851-2	chr10	56880751	56880951	+	596.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	448870.0	NR_152768	102640560.0	Mm.417249	NR_152768		Gm36595	-	predicted gene, 36595	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-90577154-2	chr2	90577054	90577254	+	901.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	3493.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120722661-2	chr8	120722561	120722761	+	723.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	-13697.0	NM_008320	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-37975372-2	chr3	37975272	37975472	+	806.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_040559, intron 2 of 3)	intron (NR_040559, intron 2 of 3)	76559.0	NR_040559	626410.0	Mm.389417	NR_040559	ENSMUSG00000106461	Gm20755	-	predicted gene, 20755	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-45244961-4	chr2	45244942	45245142	+	741.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-127600.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-55655021-4	chr19	55654929	55655129	+	973.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045318, intron 2 of 3)	intron (NR_045318, intron 2 of 3)	47175.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-65682402-2	chr17	65682302	65682502	+	679.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133685, intron 5 of 6)	intron (NM_133685, intron 5 of 6)	-40198.0	NM_001146002	213272.0	Mm.255732	NM_153519	ENSMUSG00000050612	Txndc2	AU021712|Sptrx-1|Sptrx1|Trx4	thioredoxin domain containing 2 (spermatozoa)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-180255490-2	chr2	180255390	180255590	+	864.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1889.0	NM_025587	66481.0	Mm.289669	NM_025587	ENSMUSG00000039001	Rps21	1810049N11Rik|2410030A14Rik	ribosomal protein S21	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-55497713-2	chr12	55497613	55497813	+	873.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5066.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-31075879-4	chr6	31075783	31075983	+	979.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12790.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-17886165-2	chr2	17886065	17886265	+	684.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	110793.0	NM_026627	68231.0	Mm.23887	NM_026627	ENSMUSG00000062651	H2al2a	1700113O17Rik|H2A.Bbd|H2A.L.2|H2afb1|H2al2|TSEG-1|Tseg1	H2A histone family member L2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-11026014-3	chr16	11025902	11026102	+	725.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17104.0	NR_040518	100043147.0	Mm.489001	NR_040518	ENSMUSG00000097056	Gm4262	-	predicted gene 4262	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-50568134-2	chr9	50568034	50568234	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008360, intron 3 of 7)	B4|SINE|B4	-6866.0	NM_025687	66654.0	Mm.442255	NM_025687	ENSMUSG00000032065	Tex12	5730518K06Rik	testis expressed gene 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141834708-4	chr4	141834645	141834845	+	850.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8740.0	NM_007919	13706.0	Mm.45316	NM_007919	ENSMUSG00000058579	Cela2a	Ela-2|Ela2|Ela2a	chymotrypsin-like elastase family, member 2A	protein-coding	4.5596557857257	4.34544248556063	4.7852116300472	4.36154609525332	3.57716148657136	5.14612661751067	3.41587006629405	4.11061217124571	-0.368304356359774	0.434348479643581	0.906420406788675
Merged-chr12-52701351-3	chr12	52701251	52701451	+	986.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198111, intron 1 of 13)	intron (NM_198111, intron 1 of 13)	1968.0	NM_198111	238161.0	Mm.310822	NM_198111	ENSMUSG00000061603	Akap6	AI482140|Akapalpha|Akapbeta|PRKA	A kinase (PRKA) anchor protein 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5622107-4	chr19	5622020	5622220	+	951.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-12026.0	NM_178637	81601.0	Mm.228930	NM_178637	ENSMUSG00000024926	Kat5	AI839539|CPLA2|Htatip|Htatip1|PLIP|Tip55|Tip60	K(lysine) acetyltransferase 5	protein-coding	3.53314423737931	4.24619550867208	3.75981367779679	4.23610389399408	3.28186453605866	2.34482919735335	2.01137163340972	3.91872806308934	-1.266390195284	0.0435103864474119	0.299219115358835
Merged-chr8-14992968-4	chr8	14992880	14993080	+	870.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037736, intron 26 of 27)	intron (NM_001037736, intron 26 of 27)	-18045.0	NM_029116	74901.0	Mm.46675	NM_029116	ENSMUSG00000055675	Kbtbd11	2900016B01Rik|4930465M17Rik|mKIAA0711	kelch repeat and BTB (POZ) domain containing 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-44146880-3	chr10	44146772	44146972	+	766.766663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23575.0	NR_001582	70365.0	Mm.87073	NR_001582	ENSMUSG00000091358	Speer5-ps1	1700007C10Rik|SPEER-5|Speer5-ps	spermatogenesis associated glutamate (E)-rich protein 5, pseudogene 1	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-31114411-4	chr2	31114304	31114504	+	968.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355105, intron 1 of 15)	MT2B|LTR|ERVL	-17904.0	NM_001177650	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-40773327-4	chr4	40773229	40773429	+	985.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15444.0	NM_021535	74255.0	Mm.289929	NM_021535	ENSMUSG00000028409	Smu1	2600001O03Rik|2610203K23Rik|AB044414|AI845086|AW556129|Bwd	smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-73516606-2	chr2	73516506	73516706	+	645.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	12881.0	NM_153138	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-114452919-4	chr8	114452824	114453024	+	865.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019573, intron 4 of 8)	intron (NM_019573, intron 4 of 8)	13272.0	NM_019573	80707.0	Mm.440420	NM_019573	ENSMUSG00000004637	Wwox	5330426P09Rik|9030416C10Rik|WOX1	WW domain-containing oxidoreductase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27975490-3	chr17	27975385	27975585	+	698.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181413, intron 2 of 24)	intron (NM_181413, intron 2 of 24)	66179.0	NM_181413	224650.0	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-88954201-3	chr11	88954093	88954293	+	690.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029023, intron 1 of 12)	B2_Mm2|SINE|B2	1249.0	NM_029023	74617.0	Mm.34126	NM_029023	ENSMUSG00000000278	Scpep1	2410018F01Rik|4833411K15Rik|AI957256|Risc	serine carboxypeptidase 1	protein-coding	2.38961142066432	2.69051356965685	1.32146145006845	2.06866918550769	2.5753671388501	2.49287192643932	1.32942830365101	2.85778045092077	0.475357759994448	0.628792787576846	0.981055511574238
Merged-chr16-96126825-3	chr16	96126719	96126919	+	833.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008251, intron 4 of 5)	B3A|SINE|B2	906.0	NM_008251	15312.0	Mm.2756	NM_008251	ENSMUSG00000040681	Hmgn1	HMG-14|Hmg14	high mobility group nucleosomal binding domain 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-70227728-4	chr12	70227621	70227821	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045174)	promoter-TSS (NR_045174)	-38.0	NM_133198	110095.0	Mm.256926	NM_133198	ENSMUSG00000021069	Pygl	-	liver glycogen phosphorylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-30605493-3	chr12	30605445	30605645	+	707.305542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21102.0	NM_172049	211986.0	Mm.34035	NM_172049	ENSMUSG00000043061	Tmem18	BC024093	transmembrane protein 18	protein-coding	3.51122784555923	3.32246526825276	3.6283408265505	2.16337670691697	3.32230444020411	1.87877067609517	3.23482594151564	1.46758918170277	-0.904525747263321	0.27039731266122	0.773417332874928
Merged-chr12-112543069-4	chr12	112542969	112543169	+	849.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31909.0	NM_178915	104885.0	Mm.37751	NM_178915	ENSMUSG00000054013	Tmem179	AI839735	transmembrane protein 179	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-110268661-4	chr11	110268559	110268759	+	967.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_147219)	TTS (NM_147219)	-16883.0	NM_001166557	76184.0	Mm.159704	NM_147218	ENSMUSG00000044749	Abca6	6330565N06Rik	ATP-binding cassette, sub-family A (ABC1), member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-181070469-2	chr2	181070369	181070569	+	707.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31292.0	NM_015730	11438.0	Mm.252369	NM_015730	ENSMUSG00000027577	Chrna4	Acra-4|Acra4|EBN1|ENFL1	cholinergic receptor, nicotinic, alpha polypeptide 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-84189405-2	chr17	84189305	84189505	+	866.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_183021)	TTS (NM_183021)	-1458.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5566768-2	chr19	5566668	5566868	+	822.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-1256.0	NM_001362046	381201.0	Mm.441906	NM_001033448	ENSMUSG00000049562	Ap5b1	Gm962|beta-5	adaptor-related protein complex 5, beta 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-33828626-2	chr16	33828491	33828691	+	793.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1074.0	NM_010580	16419.0	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-65873260-3	chr5	65873197	65873397	+	931.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081105, intron 1 of 2)	intron (NM_001081105, intron 1 of 2)	9728.0	NM_001081105	74734.0	Mm.20323	NM_001081105	ENSMUSG00000029204	Rhoh	5830400A04Rik|AU019774|Arhh	ras homolog family member H	protein-coding	2.64483035254454	1.81474759710674	1.28889425457483	2.56102862870897	2.59869343866347	2.31747338094573	1.29634172196188	2.57458189411474	0.207992375933634	0.838668346693284	0.998431161219273
Merged-chr11-69101272-2	chr11	69101172	69101372	+	942.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_011065, exon 4 of 23)	exon (NM_011065, exon 4 of 23)	1120.0	NM_001159367	18626.0	Mm.7373	NM_011065	ENSMUSG00000020893	Per1	Hftm|Per|m-rigui|mPer1	period circadian clock 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-74724839-3	chr7	74724741	74724941	+	979.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4|LINE|L1	-170061.0	NM_001038643	108116.0	Mm.425467	NM_023908	ENSMUSG00000025790	Slco3a1	5830414C08Rik|Anr1|MJAM|OATP-D|R75096|Slc21a11	solute carrier organic anion transporter family, member 3a1	protein-coding	2.72563432005697	3.45492684520413	1.89395460077111	1.5267734881763	4.46662310924386	4.60848505199319	4.51013523380837	3.42666683680786	2.57402349097149	7.84559651475865e-05	0.00254409370227228
Merged-chr10-79838321-3	chr10	79838262	79838462	+	736.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 3 of 4)	intron (NR_038088, intron 3 of 4)	-16070.0	NM_001077363	19205.0	Mm.265610	NM_008956	ENSMUSG00000006498	Ptbp1	AA407203|AL033359|HNRPI|PTB-1|PTB2|PTB3|PTB4|Ptb|pPTB	polypyrimidine tract binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-79465753-2	chr7	79465653	79465853	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360095, intron 1 of 22)	CpG	520.0	NM_001360095	18975.0	Mm.3616	NM_017462	ENSMUSG00000039176	Polg	AA409516|PolgA	polymerase (DNA directed), gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-149641773-2	chr4	149641673	149641873	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023051, intron 11 of 18)	intron (NM_023051, intron 11 of 18)	13794.0	NR_105990	102465983.0		NR_105990	ENSMUSG00000098580	Mir7023	Gm27912|mmu-mir-7023	microRNA 7023	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-44454325-4	chr9	44454197	44454397	+	842.033325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009476, intron 1 of 4)	intron (NM_009476, intron 1 of 4)	470.0	NM_009476	22269.0	Mm.4453	NM_009476	ENSMUSG00000041523	Upk2	AW491716|UPII	uroplakin 2	protein-coding	2.89953952886617	3.25640814019662	1.70888549133222	2.06737433889791	2.99364044012818	3.28032570162156	2.82057891646533	1.39771407205428	0.292896435779736	0.740337652349788	0.998431161219273
Merged-chr2-113807852-2	chr2	113807752	113807952	+	605.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009162, intron 2 of 5)	intron (NM_009162, intron 2 of 5)	21239.0	NM_009162	20394.0	Mm.4836	NM_009162	ENSMUSG00000023236	Scg5	7B2|AI325031|Sgne-1|Sgne1	secretogranin V	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117407746-3	chr8	117407657	117407857	+	853.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028941, intron 3 of 20)	intron (NM_028941, intron 3 of 20)	-45266.0	NR_106045	102466801.0		NR_106045	ENSMUSG00000099062	Mir7077	Gm27774|mmu-mir-7077	microRNA 7077	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-11704312-4	chr16	11704217	11704417	+	863.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028964, intron 18 of 20)	intron (NM_028964, intron 18 of 20)	-75385.0	NR_126430	73761.0	Mm.39183	NR_126430		4833415N18Rik	-	RIKEN cDNA 4833415N18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-129514512-4	chr4	129514465	129514665	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010807, intron 1 of 1)	intron (NM_010807, intron 1 of 1)	984.0	NM_010807	17357.0	Mm.424974	NM_010807	ENSMUSG00000047945	Marcksl1	AL022768|AW215397|AW536807|D4Bc1|F52|MacMARCKS|Macs2|Macs3|Mlp|Mrp	MARCKS-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-60620768-4	chr13	60620670	60620870	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	18559.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-43550207-4	chr17	43550096	43550296	+	779.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-6557.0	NM_001254953	100043332.0	Mm.17626	NM_001254953	ENSMUSG00000096140	Ankrd66	AU041848|D730048J04Rik|Gm4368	ankyrin repeat domain 66	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-31809983-4	chr6	31809879	31810079	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-143848.0	NR_152155	434003.0	Mm.332979	NR_152155	ENSMUSG00000084973	Gm13848	-	predicted gene 13848	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-73256799-4	chr5	73256673	73256873	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028194)	promoter-TSS (NM_028194)	-155.0	NM_028194	72313.0	Mm.260594	NM_028194	ENSMUSG00000070733	Fryl	2010313D22Rik|2310004H21Rik|2510002A14Rik|9030227G01Rik|mKIAA0826	FRY like transcription coactivator	protein-coding	5.29187757557176	4.48199413471624	6.03834153563428	5.28650788888319	5.49370789165587	5.73193537263313	6.2711888360936	5.76578304661316	0.516607482043717	0.112800797877608	0.526199056351301
Merged-chr4-109476716-4	chr4	109476653	109476853	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013876)	promoter-TSS (NM_013876)	-248.0	NM_013876	29864.0	Mm.392580	NM_013876	ENSMUSG00000028557	Rnf11	-	ring finger protein 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-62261079-2	chr11	62260979	62261179	+	639.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007413, intron 1 of 1)	intron (NM_007413, intron 1 of 1)	12095.0	NM_007413	11541.0	Mm.40740	NM_007413	ENSMUSG00000018500	Adora2b	A2BAR|A2BR|A2b|AA2BR|AI480866|AI605384	adenosine A2b receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-91746611-4	chr12	91746509	91746709	+	892.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 1 of 6)	MTC|LTR|ERVL-MaLR	39827.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-103774385-5	chr13	103774204	103774404	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001361085, exon 1 of 12)	exon (NM_001361085, exon 1 of 12)	304.0	NM_001361085	218543.0	Mm.458176	NM_172592	ENSMUSG00000032621	Srek1	8430401B01|AI450757|AI462342|SRrp508|SRrp86|Sfrs12|Srsf12	splicing regulatory glutamine/lysine-rich protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-144070762-2	chr2	144070662	144070862	+	591.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001044750, intron 2 of 2)	intron (NM_001044750, intron 2 of 2)	37660.0	NM_207275	403171.0	Mm.389362	NM_207275	ENSMUSG00000037307	Banf2	4930517K23Rik|Baf-L|Baf-like|Gm115	barrier to autointegration factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-22070352-3	chr10	22070279	22070479	+	967.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2300.0	NM_053264	114671.0	Mm.288194	NM_053264	ENSMUSG00000069712	4930444G20Rik	-	RIKEN cDNA 4930444G20 gene	protein-coding	2.83511239203252	3.76704557659229	2.71874106295709	3.41546679106239	3.04187652800313	3.79307243307838	2.74079680223821	3.10510846818486	-0.0410598806744172	0.948030473329765	0.998431161219273
Merged-chr10-80020171-2	chr10	80020071	80020271	+	806.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027521, intron 1 of 21)	intron (NM_027521, intron 1 of 21)	496.0	NM_027521	70719.0	Mm.243954	NM_027521	ENSMUSG00000035697	Arhgap45	6330406L22Rik|AW539505|Ha-1|Hmha1	Rho GTPase activating protein 45	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-103717180-2	chr2	103717102	103717302	+	622.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_178890, exon 17 of 17)	exon (NM_178890, exon 17 of 17)	44068.0	NM_153126	98956.0	Mm.288005	NM_153126	ENSMUSG00000027185	Nat10	AI429152	N-acetyltransferase 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-102990449-4	chr2	102990358	102990558	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	83055.0	NM_175094	27402.0	Mm.315011	NM_175094	ENSMUSG00000010914	Pdhx	AI481367|E3bp|Pdx1	pyruvate dehydrogenase complex, component X	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100608491-3	chr7	100608423	100608623	+	783.916687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_153424)	promoter-TSS (NR_153424)	-222.0	NR_003559	52443.0	Mm.473730	NM_198831	ENSMUSG00000030706	Mrpl48	1810030E20Rik|2610028L11Rik|CGI-118|D4Ertd786e|L48mt|MRP-L48	mitochondrial ribosomal protein L48	protein-coding	1.77567660447848	1.97597739693355	2.29524312697334	2.42074960115583	1.47001730216853	1.9897789920945	2.31310176036444	2.43316679678594	-0.0911953798585245	0.921653463389913	0.998431161219273
Merged-chr11-120531067-2	chr11	120530967	120531167	+	917.9500119999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_008101, intron 1 of 13)	intron (NM_008101, intron 1 of 13)	340.0	NM_008101	14527.0	Mm.22329	NM_008101	ENSMUSG00000025127	Gcgr	GR	glucagon receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120237402-4	chr11	120237297	120237497	+	926.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198423, intron 2 of 27)	CpG-2934	4450.0	NM_198423	268515.0	Mm.309498	NM_198423	ENSMUSG00000039741	Bahcc1	B930044J06|BC060615	BAH domain and coiled-coil containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-131868411-4	chr3	131868305	131868505	+	914.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-216887.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	-1.29633872064033	-1.26720680975202	-1.27768629845203	-1.28629446248818	-0.70879630402184	-1.2649358608345	-1.2753139719142	-1.28475360524138	2.50884260628271	0.468217847016783	1
Merged-chr10-121330912-2	chr10	121330812	121331012	+	749.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361015, intron 2 of 12)	intron (NM_001361015, intron 2 of 12)	-19516.0	NM_029057	74694.0	Mm.233833	NM_029057	ENSMUSG00000052302	Tbc1d30	4930505D03Rik|9530013E20Rik	TBC1 domain family, member 30	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-76617405-2	chr15	76617305	76617505	+	917.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028064)	promoter-TSS (NM_028064)	-553.0	NM_028064	72027.0	Mm.276829	NM_028064	ENSMUSG00000063354	Slc39a4	1600025H15Rik|AU041686|AWMS2|ZIP4	solute carrier family 39 (zinc transporter), member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-48984523-3	chr9	48984371	48984571	+	936.977783	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175482)	promoter-TSS (NM_175482)	-914.0	NM_001359739	235323.0	Mm.21630	NM_175482	ENSMUSG00000032267	Usp28	9830148O20Rik|AU022237|mKIAA1515	ubiquitin specific peptidase 28	protein-coding	2.82843563452882	3.17273227746548	2.61765151565827	2.66828263853543	3.16095507838481	1.97276808502151	3.486010641225	3.4476963937854	0.547703562888675	0.430540039843274	0.904223090525788
Merged-chr9-78194091-4	chr9	78194006	78194206	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010357, intron 1 of 6)	B2_Mm2|SINE|B2	2140.0	NM_010357	14860.0	Mm.2662	NM_010357	ENSMUSG00000032348	Gsta4	GST5.7|mGsta4	glutathione S-transferase, alpha 4	protein-coding	4.13420499607244	3.76505192666002	3.79235763203525	3.6157862937603	4.24507078340056	3.41021159000769	2.91641364858021	4.01834138833754	-0.119556074291238	0.817893989204665	0.998431161219273
Merged-chr10-81543437-2	chr10	81543337	81543537	+	746.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010301, intron 1 of 6)	intron (NM_010301, intron 1 of 6)	1609.0	NM_010301	14672.0	Mm.260925	NM_010301	ENSMUSG00000034781	Gna11	Dsk7|E430025L19	guanine nucleotide binding protein, alpha 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-75426620-2	chr16	75426520	75426720	+	969.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR31_Mur|LTR|ERVK	159441.0	NM_001252513	320355.0	Mm.99517	NM_177142	ENSMUSG00000032948	Lipi	D930038D03Rik|lpd1	lipase, member I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-8259233-4	chr6	8259148	8259348	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026632)	promoter-TSS (NM_026632)	-40.0	NM_001302354	100036521.0	Mm.446106	NM_001302353	ENSMUSG00000089862	Umad1	Gm16039	UMAP1-MVP12 associated (UMA) domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-58498746-4	chr10	58498642	58498842	+	824.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162956, intron 1 of 15)	intron (NM_001162956, intron 1 of 15)	805.0	NM_001162956	76138.0	Mm.211744	NM_001162956	ENSMUSG00000038010	Ccdc138	6230424H07Rik|BC042726	coiled-coil domain containing 138	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-8445495-4	chr15	8445414	8445614	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG-4777	-1051.0	NM_201232	71175.0	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	NIPBL cohesin loading factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-34541189-4	chr15	34541070	34541270	+	837.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45859.0	NM_152894	67724.0	Mm.248779	NM_026340	ENSMUSG00000022325	Pop1	4932434G09Rik	processing of precursor 1, ribonuclease P/MRP family, (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-49198958-4	chr13	49198879	49199079	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11432.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-117714366-4	chr14	117714270	117714470	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011821, intron 4 of 8)	intron (NM_011821, intron 4 of 8)	239477.0	NR_105747	102465148.0		NR_105747	ENSMUSG00000098648	Mir6239	Gm28025|mmu-mir-6239	microRNA 6239	ncRNA	4.40171153780811	5.31739576828634	4.57016914754613	4.76505340633162	3.35165812101025	1.95927210954236	4.11996036651679	3.99420010634737	-1.59800188875305	0.00191502353290753	0.0322401108715966
Merged-chr4-139282257-2	chr4	139282157	139282357	+	603.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037761, intron 6 of 9)	intron (NM_001037761, intron 6 of 9)	28451.0	NR_151463	212555.0	Mm.45131	NM_145384	ENSMUSG00000028744	Pqlc2	BC019216	PQ loop repeat containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-65182371-2	chr1	65182271	65182471	+	590.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111320, intron 1 of 8)	intron (NM_001111320, intron 1 of 8)	-3229.0	NM_010497	15926.0	Mm.9925	NM_010497	ENSMUSG00000025950	Idh1	AI314845|AI788952|E030024J03Rik|Id-1|Idh-1|Idpc	isocitrate dehydrogenase 1 (NADP+), soluble	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-124805771-4	chr6	124805660	124805860	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2901.0	NM_001306051	14794.0	Mm.261906	NM_013539	ENSMUSG00000038451	Spsb2	AI461677|C9|Grcc9|SSB2	splA/ryanodine receptor domain and SOCS box containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-118279163-3	chr7	118279073	118279273	+	748.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35266.0	NR_027879	67745.0	Mm.483404	NM_183267	ENSMUSG00000055159	4930583K01Rik	-	RIKEN cDNA 4930583K01 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-14873960-4	chr8	14873857	14874057	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14579.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-25507841-2	chr9	25507741	25507941	+	677.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 2 of 7)	L1ME3E|LINE|L1	26244.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-38042516-2	chr19	38042413	38042613	+	660.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001302140, intron 1 of 53)	intron (NM_001302140, intron 1 of 53)	1064.0	NM_001099634	226101.0	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding	0.715426109616167	1.65968104218252	1.9725951755377	1.64161491948039	0.916260368260474	1.39806659426994	0.755231839431036	0.74053189259214	-2.29338538205362	0.112566736546254	0.525379553325447
Merged-chr16-14315385-1	chr16	14315285	14315485	+	551.0	f1_balb.idr	intron (NM_025345, intron 1 of 4)	intron (NM_025345, intron 1 of 4)	1947.0	NM_025345	66086.0	Mm.42072	NM_025345	ENSMUSG00000022677	Fopnl	0610037P05Rik	Fgfr1op N-terminal like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-26702004-2	chr8	26701904	26702104	+	724.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	122419.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81477001-2	chr10	81476901	81477101	+	666.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_176954, intron 1 of 11)	L1MB1|LINE|L1	-2157.0	NM_001311126	319586.0	Mm.152689	NM_176954	ENSMUSG00000034818	Celf5	4930565A21Rik|Brunol5	CUGBP, Elav-like family member 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-21701679-6	chr5	21701582	21701782	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359963)	promoter-TSS (NM_001359963)	-60.0	NM_001359965	242864.0	Mm.153292	NM_178728	ENSMUSG00000044968	Napepld	A530089G06|Mbldc1|NAPE-PLD	N-acyl phosphatidylethanolamine phospholipase D	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-73106442-2	chr17	73106342	73106542	+	890.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1543.0	NM_001177968	225010.0	Mm.329194	NM_001081071	ENSMUSG00000054469	Lclat1	AI181996|Agpat8|Alcat1|Gm91|Lycat	lysocardiolipin acyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-31736876-1	chr11	31736776	31736976	+	637.5	f0_balb.idr	Intergenic	Intergenic	-65014.0	NM_001024919	69556.0	Mm.34183	NM_001024919	ENSMUSG00000044502	Bod1	2310022M17Rik|BOD2.1|Fam44b	biorientation of chromosomes in cell division 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-68451666-2	chr16	68451566	68451766	+	624.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	-830758.0	NM_178721	239857.0	Mm.394300	NM_178721	ENSMUSG00000064115	Cadm2	2900078E11Rik|9330131D06|A830029E02Rik|Igdf4d|Igsf4d|NECL3|SynCAM 2|SynCAM2	cell adhesion molecule 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-40497876-1	chr8	40497776	40497976	+	728.0	f0_balb.idr	intron (NR_155265, intron 5 of 6)	intron (NR_155265, intron 5 of 6)	12603.0	NM_001361938	18983.0	Mm.272551	NM_011135	ENSMUSG00000031601	Cnot7	AU022737|CAF-1|Caf1|Pop2	CCR4-NOT transcription complex, subunit 7	protein-coding	1.2788222122348	1.41642531755816	1.37336246195833	2.44319231065897	1.6241241472332	1.64450547980303	2.68758657956816	2.19653443241511	0.964811128546675	0.360610068163834	0.856639307912424
Merged-chr10-21605160-4	chr10	21605064	21605264	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027968, intron 2 of 2)	intron (NR_027968, intron 2 of 2)	12019.0	NR_027968	67692.0	Mm.54306	NM_183266	ENSMUSG00000050844	1700020N01Rik	-	RIKEN cDNA 1700020N01 gene	ncRNA	6.34977135407307	5.40637815636935	6.36420265748957	6.19352778841895	6.20776962687521	5.70498286793591	6.44958866068642	6.38745637777349	0.0917674882485406	0.723062426898015	0.998431161219273
Merged-chr10-127062671-4	chr10	127062570	127062770	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009870)	promoter-TSS (NM_009870)	-865.0	NM_009870	12567.0	Mm.6839	NM_009870	ENSMUSG00000006728	Cdk4	Crk3	cyclin-dependent kinase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-131091546-2	chr2	131091446	131091646	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4781.0	NM_011426	20612.0	Mm.1374	NM_011426	ENSMUSG00000027322	Siglec1	Cd169|Siglec-1|Sn	sialic acid binding Ig-like lectin 1, sialoadhesin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-125015937-4	chr4	125015849	125016049	+	908.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14065.0	NM_145552	230737.0	Mm.90760	NM_145552	ENSMUSG00000028869	Gnl2	BC003262|HUMAUANTIG|Ngp-1	guanine nucleotide binding protein-like 2 (nucleolar)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-125050483-1	chr6	125050383	125050583	+	664.0	f1_c57bl6.idr	promoter-TSS (NR_130997)	promoter-TSS (NR_130997)	556.0	NM_016845	54137.0	Mm.347910	NM_016845	ENSMUSG00000072770	Acrbp	OY-TES-1|sp32	proacrosin binding protein	protein-coding	-0.673799383071314	-0.80122251959357	-0.804026723251391	-0.806180974523752	-0.809211222440199	-0.798944769053816	-0.484917255454488	-0.393912271420508	2.0860137676482	0.458834569418593	1
Merged-chr10-80158527-4	chr10	80158424	80158624	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_021565)	TTS (NM_021565)	8842.0	NM_001305799	59090.0	Mm.143813	NM_021565	ENSMUSG00000035621	Midn	3000003C15Rik	midnolin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-160081173-2	chr1	160081082	160081282	+	863.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3197.0	NR_038031	75255.0	Mm.414845	NR_038030	ENSMUSG00000026729	4930562F07Rik	-	RIKEN cDNA 4930562F07 gene	ncRNA	3.29038400123883	3.3130362396908	4.19083165060463	2.86995379265696	2.96060009697602	3.87476586989268	4.35890930659869	3.31760527720194	0.328102199321283	0.578305011602457	0.965985075107763
Merged-chr17-12248543-2	chr17	12248443	12248643	+	720.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357722, intron 13 of 25)	intron (NM_001357722, intron 13 of 25)	70117.0	NM_011948	26407.0	Mm.28587	NM_011948	ENSMUSG00000014426	Map3k4	D17Rp17|D17Rp17e|MAPKKK4|MEKK 4|MTK1|Mek4b|Mekk4|RP17|Rp17a|Tas|mKIAA0213	mitogen-activated protein kinase kinase kinase 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-138192197-4	chr1	138192113	138192313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16908.0	NM_001268286	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-51361233-2	chr3	51361133	51361333	+	575.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20589.0	NM_023502	69257.0	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-47780624-3	chr6	47780536	47780736	+	866.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	23016.0	NR_030485	735289.0		NR_030485	ENSMUSG00000076060	Mir704	Mirn704|mir-704|mmu-mir-704	microRNA 704	ncRNA	2.30542970177455	1.34276560770835	1.30537314757808	2.20676735405373	2.32561196855691	2.82418337014063	3.16861543782418	2.33998759177415	1.8381783409223	0.049008787521909	0.322423355127976
Merged-chr16-91014484-2	chr16	91014384	91014584	+	676.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_152264, exon 18 of 18)	non-coding (NR_152264, exon 18 of 18)	-3176.0	NM_001164483	104015.0	Mm.187079	NM_001045515	ENSMUSG00000022973	Synj1	A930006D20Rik|AA675315|mKIAA0910	synaptojanin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-30196487-4	chr14	30196371	30196571	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083616, intron 4 of 46)	intron (NM_001083616, intron 4 of 46)	157015.0	NM_001302637	12289.0	Mm.9772	NM_028981	ENSMUSG00000015968	Cacna1d	8430418G19Rik|C79217|Cach3|Cacn4|Cacnl1a2|Cav1.3|Cchl1a|Cchl1a2|D-LTCC	calcium channel, voltage-dependent, L type, alpha 1D subunit	protein-coding	3.27459960244674	1.58636570024385	2.26112745929039	2.64505762938192	2.84040139125793	3.30028877556044	4.30091044310146	2.99318514049875	1.49518110043162	0.0464022180161039	0.311024475842019
Merged-chr2-59346688-4	chr2	59346571	59346771	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 17 of 20)	intron (NM_175464, intron 17 of 20)	40011.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-102900506-4	chr2	102900459	102900659	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039150, intron 1 of 13)	intron (NM_001039150, intron 1 of 13)	1106.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	3.00016391858132	2.49169030089548	3.39116279767375	3.16000922208554	2.48539991159172	1.61059675049567	3.41675194564187	2.61567624762852	-0.642727829469787	0.400816663096913	0.885852571012543
Merged-chr5-109556415-2	chr5	109556315	109556515	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310694, intron 4 of 7)	CpG-11313	2578.0	NM_016715	57914.0	Mm.35771	NM_016715	ENSMUSG00000033467	Crlf2	CRLM2|Ly114|Tpte2|Tslpr	cytokine receptor-like factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-93023768-1	chr10	93023668	93023868	+	570.0	f1_c57bl6.idr	intron (NM_001347060, intron 19 of 67)	intron (NM_001347060, intron 19 of 67)	57828.0	NM_001347060	380654.0	Mm.34980	NM_001347060	ENSMUSG00000020014	Cfap54	4930485B16Rik|Gm872	cilia and flagella associated protein 54	protein-coding	0.8527509707175	0.172274587494321	0.164583708873755	0.158602501292781	1.15345918255547	0.173998987040596	0.166285846394766	0.500835398678504	1.05785937282992	0.609812285817395	1
Merged-chr11-95293253-4	chr11	95293149	95293349	+	938.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195003, intron 5 of 14)	intron (NM_001195003, intron 5 of 14)	16997.0	NM_001195004	217127.0	Mm.90213	NM_177619	ENSMUSG00000038909	Kat7	Hbo1|Hboa|Myst2	K(lysine) acetyltransferase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-116635603-3	chr11	116635507	116635707	+	975.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-8588.0	NM_172572	217344.0	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-31066898-4	chr16	31066795	31066995	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198626, intron 1 of 3)	intron (NM_198626, intron 1 of 3)	14537.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	4.68471321080095	5.07282507691141	4.52097057721652	5.07338852180647	4.94308972567268	4.84953015926664	4.79249342329696	3.92609813175254	-0.212973742440976	0.564598920683451	0.960753698599198
Merged-chr14-37114323-2	chr14	37114223	37114423	+	675.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4222.0	NM_001206684	70045.0	Mm.271619	NM_001206684	ENSMUSG00000096001	2610528A11Rik	AW494830|Gpr15l	RIKEN cDNA 2610528A11 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-75517867-3	chr3	75517774	75517974	+	790.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019745, intron 7 of 7)	intron (NM_019745, intron 7 of 7)	38978.0	NM_019745	56426.0	Mm.316473	NM_019745	ENSMUSG00000027835	Pdcd10	2410003B13Rik|Ccm3|Tfa15|Tfar15	programmed cell death 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-80877116-2	chr12	80877016	80877216	+	751.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_178682, exon 6 of 6)	exon (NM_178682, exon 6 of 6)	47331.0	NR_033786	67340.0	Mm.386790	NR_033786	ENSMUSG00000101912	1700052I22Rik	-	RIKEN cDNA 1700052I22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-140664756-2	chr6	140664656	140664856	+	568.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009637, intron 8 of 8)	B3|SINE|B2	37871.0	NM_001309436	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-64088896-3	chr1	64088787	64088987	+	794.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033563, intron 1 of 3)	intron (NM_033563, intron 1 of 3)	32502.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-117891289-4	chr5	117891175	117891375	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008712, intron 2 of 27)	MER47A|DNA|TcMar-Tigger	24436.0	NM_008712	18125.0	Mm.44249	NM_008712	ENSMUSG00000029361	Nos1	2310005C01Rik|N-NOS|NC-NOS|NO|NOS|NOS-I|Nos-1|bNOS|nNOS	nitric oxide synthase 1, neuronal	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-112706952-2	chr13	112706852	112707052	+	805.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178746, intron 10 of 14)	intron (NM_178746, intron 10 of 14)	46186.0	NM_178746	268706.0	Mm.40834	NM_175376	ENSMUSG00000047789	Slc38a9	4833412L08Rik|6720411P22Rik|9130023D20Rik|9430067K09Rik|A730092C09	solute carrier family 38, member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-90738347-4	chr16	90738288	90738488	+	878.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029844)	promoter-TSS (NM_029844)	64.0	NM_029844	77037.0	Mm.22455	NM_029844	ENSMUSG00000039956	Mrap	1110025G12Rik|C21ORF61|Falp|ORF61	melanocortin 2 receptor accessory protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-153549630-4	chr1	153549487	153549687	+	977.5476070000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028749, intron 1 of 11)	CpG	127.0	NM_028749	74091.0	Mm.24887	NM_028749	ENSMUSG00000042684	Npl	0610033B02Rik	N-acetylneuraminate pyruvate lyase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-83060676-2	chr11	83060576	83060776	+	921.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4436.0	NM_011408	20556.0	Mm.278689	NM_011408	ENSMUSG00000072620	Slfn2	Shlf2	schlafen 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84813254-4	chr8	84813172	84813372	+	850.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9551.0	NM_201227	23863.0	Mm.304252	NM_201227	ENSMUSG00000053226	Dand5	Cerl-2|Cerl2|Cerr2|Dte|GREM3|coco	DAN domain family member 5, BMP antagonist	protein-coding	3.361068442776	5.01070602581673	2.93904750786809	3.08845170969915	3.31218050268182	2.36017965098907	3.68435624586795	4.4712009346985	-0.328168570288526	0.62690373667962	0.980912176761026
Merged-chr10-98745816-2	chr10	98745716	98745916	+	846.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-168826.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135023500-3	chr5	135023488	135023688	+	735.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_016801, exon 1 of 10)	exon (NM_016801, exon 1 of 10)	106.0	NR_133683	20907.0	Mm.6225	NM_016801	ENSMUSG00000007207	Stx1a	HPC-1	syntaxin 1A (brain)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-6137684-4	chr18	6137596	6137796	+	917.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1598.0	NM_001039692	75415.0	Mm.239675	NM_029277	ENSMUSG00000041225	Arhgap12	2810011M08Rik	Rho GTPase activating protein 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-75190497-2	chr14	75190397	75190597	+	919.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008879, intron 2 of 16)	intron (NM_008879, intron 2 of 16)	-51790.0	NM_019775	56373.0	Mm.24242	NM_019775	ENSMUSG00000021999	Cpb2	1110032P04Rik|4930405E17Rik|AI255929|CPR|Cpu|TAFI	carboxypeptidase B2 (plasma)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-100504779-2	chr7	100504654	100504854	+	951.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_153527, intron 5 of 7)	intron (NM_153527, intron 5 of 7)	10061.0	NM_153527	69387.0	Mm.278554	NM_153527	ENSMUSG00000030708	Dnajb13	1700014P03Rik|Tsarg	DnaJ heat shock protein family (Hsp40) member B13	protein-coding	1.1530194408094	1.85513717666685	0.837114948830949	1.81765054579766	0.802972507133956	1.4807686697903	0.841040306783549	1.91630654756351	-0.427549709933912	0.758996878199515	0.998431161219273
Merged-chr10-87732200-4	chr10	87732102	87732302	+	952.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-126063.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-15750267-3	chr6	15750154	15750354	+	920.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175088, intron 3 of 4)	intron (NM_175088, intron 3 of 4)	29593.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-30867096-3	chr5	30866999	30867199	+	921.638916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001310516)	TTS (NM_001310516)	-2480.0	NM_144525	68796.0	Mm.205169	NM_144525	ENSMUSG00000038828	Tmem214	1110039B18Rik|4921530J21Rik|AI841294|AU018742|C76280	transmembrane protein 214	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-18702929-2	chr5	18702829	18703029	+	672.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-342516.0	NM_010305	14677.0	Mm.254629	NM_010305	ENSMUSG00000057614	Gnai1	AU046200|Gialpha1|Gnai-1	guanine nucleotide binding protein (G protein), alpha inhibiting 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-115675922-4	chr6	115675780	115675980	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_152134)	promoter-TSS (NR_152134)	8.0	NM_001356334	110157.0	Mm.184163	NM_029780	ENSMUSG00000000441	Raf1	6430402F14Rik|AA990557|BB129353|Craf1|D830050J10Rik|Raf-1|c-Raf|cRaf|v-Raf	v-raf-leukemia viral oncogene 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-76178072-2	chr12	76177972	76178172	+	720.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_104386)	promoter-TSS (NR_104386)	-813.0	NR_104386	13983.0	Mm.2561	NM_010157	ENSMUSG00000021055	Esr2	ER[b]|ERbeta|Estrb	estrogen receptor 2 (beta)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-75767814-4	chr16	75767733	75767933	+	983.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-1015.0	NM_030201	110920.0	Mm.26704	NM_030201	ENSMUSG00000032932	Hspa13	1600002I10Rik|AV006182|B230217N24Rik|Stch	heat shock protein 70 family, member 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-32721081-2	chr5	32721002	32721202	+	879.833374	f0_balb.idr|f1_balb.idr	Intergenic	URR1B|DNA|hAT-Charlie	25240.0	NM_001347332	320951.0	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-13518164-4	chr9	13518066	13518266	+	997.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	86805.0	NR_028271	18689.0	Mm.41972	NM_008835	ENSMUSG00000031802	Phxr4	Sp5	per-hexamer repeat gene 4	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-57305849-3	chr17	57305755	57305955	+	864.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163816, intron 19 of 25)	ZP3AR|Satellite|Satellite	26755.0	NM_001163815	22324.0	Mm.248172	NM_011691	ENSMUSG00000034116	Vav1	Vav|vav-T	vav 1 oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-7576015-2	chr9	7575915	7576115	+	777.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310717, intron 4 of 9)	intron (NM_001310717, intron 4 of 9)	4619.0	NM_001310717	234911.0	Mm.334940	NM_001030289	ENSMUSG00000070323	Mmp27	Gm180	matrix metallopeptidase 27	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-136505500-4	chr4	136505443	136505643	+	891.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024452, intron 1 of 4)	intron (NM_024452, intron 1 of 4)	35782.0	NM_024452	269593.0	Mm.485824	NM_024452	ENSMUSG00000001089	Luzp1	2700072H04Rik|AI266952|Luzp|mFLJ00226	leucine zipper protein 1	protein-coding	1.96129545144354	2.05007806264773	2.13882033191085	1.91835362213775	2.60070951767288	3.47199726617926	1.30213687585733	2.45853252456179	1.4147209345545	0.122454041617231	0.548468938348689
Merged-chr9-107722493-2	chr9	107722393	107722593	+	713.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12018.0	NM_011349	20350.0	Mm.12903	NM_011349	ENSMUSG00000034684	Sema3f	Sema4|Semak	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-8568012-3	chr11	8567885	8568085	+	786.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 4 of 30)	Lx8|LINE|L1	96550.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-40094982-4	chr10	40094853	40095053	+	986.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 1 of 5)	B3A|SINE|B2	47301.0	NM_028247	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-6291679-7	chr11	6291560	6291760	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252282)	promoter-TSS (NM_001252282)	1.0	NM_001361903	18293.0	Mm.276348	NM_010956	ENSMUSG00000020456	Ogdh	2210403E04Rik|2210412K19Rik|AA409584|d1401|mKIAA4192	oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide)	protein-coding	5.08318739765719	3.26302210775466	5.00017198513166	4.76930669220487	5.18982028920329	4.19358132253737	4.96324967680362	2.56987712375535	-0.18637183829966	0.818853961613831	0.998431161219273
Merged-chr17-32164589-2	chr17	32164489	32164689	+	699.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008716, intron 1 of 32)	intron (NM_008716, intron 1 of 32)	2263.0	NM_008716	18131.0	Mm.439741	NM_008716	ENSMUSG00000038146	Notch3	AW229011|N3|hpbk	notch 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-4281763-1	chr13	4281663	4281863	+	552.0	f1_c57bl6.idr	Intergenic	Intergenic	-2364.0	NM_013777	622402.0	Mm.27447	NM_013777	ENSMUSG00000021211	Akr1c12	AI266976|Akra	aldo-keto reductase family 1, member C12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-25835249-2	chr17	25835149	25835349	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144816, intron 6 of 7)	intron (NM_144816, intron 6 of 7)	1878.0	NM_144816	214951.0	Mm.490018	NM_144816	ENSMUSG00000025735	Rhbdl1	Rhbdl	rhomboid like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-44496272-3	chr11	44496190	44496390	+	992.033325	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22674.0	NM_028862	74315.0	Mm.156771	NM_028862	ENSMUSG00000019189	Rnf145	3732413I11Rik|TMRF1	ring finger protein 145	protein-coding	1.63022777507126	1.84777252143174	1.18816770567351	1.61053982822379	0.932054570506808	1.86284216558879	0.970874528780489	1.93229493046064	-0.20885734841004	0.868072047191505	0.998431161219273
Merged-chr12-83703373-4	chr12	83703269	83703469	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362271, intron 3 of 11)	L1ME2|LINE|L1	14806.0	NM_008943	19164.0	Mm.998	NM_008943	ENSMUSG00000019969	Psen1	Ad3h|PS-1|PS1|S182	presenilin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-17059042-3	chr7	17058996	17059196	+	916.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162950, intron 1 of 14)	(TG)n|Simple_repeat|Simple_repeat	-2417.0	NM_016868	53417.0	Mm.135110	NM_016868	ENSMUSG00000004328	Hif3a	Ipas|MOP7|NEPAS|bHLHe17	hypoxia inducible factor 3, alpha subunit	protein-coding	3.39701538937825	3.02567840579633	3.25182692930398	3.29357524687302	1.96727848852665	2.94563889287321	1.42143426584548	1.37557497296936	-2.22612691082394	0.00749549126700877	0.0888645298632126
Merged-chr10-123360671-3	chr10	123360559	123360759	+	951.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252387, intron 1 of 4)	intron (NM_001252387, intron 1 of 4)	96583.0	NM_001252387	268354.0	Mm.51939	NM_182807	ENSMUSG00000044071	Fam19a2	6330575M02|FAM19A2 TAFA-2|Sam2|TAFA2|Tafa-2	family with sequence similarity 19, member A2	protein-coding	-0.182449233378762	-0.166662619104503	-0.171823965520779	-0.17581298995874	-0.181460889038222	0.473950967739283	0.0158945098151743	0.478381293645295	3.89348792793616	0.089869888183615	1
Merged-chr10-100835615-2	chr10	100835515	100835715	+	595.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-93980.0	NR_152765	102639396.0	Mm.404529	NR_152765		Gm35722	-	predicted gene, 35722	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-31984819-4	chr12	31984722	31984922	+	869.2708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011158, intron 4 of 10)	Lx8|LINE|L1	-34577.0	NM_001361928	73389.0	Mm.390461	NM_153198	ENSMUSG00000002996	Hbp1	1700058O05Rik|BE629963|C330012F01Rik|C86454	high mobility group box transcription factor 1	protein-coding	0.917245909011909	0.649549901040464	1.22813567509678	0.988333518589359	0.710611208823605	0.450539329346466	0.442350929788244	0.435329637312755	-2.92665003617919	0.0962930407352564	1
Merged-chr7-127637103-4	chr7	127637012	127637212	+	879.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21840.0	NR_155451	320683.0	Mm.156718	NM_177226	ENSMUSG00000045639	Zfp629	9330199A09Rik|Znf629	zinc finger protein 629	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-39185829-3	chr18	39185751	39185951	+	860.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361073, intron 11 of 21)	intron (NM_001361073, intron 11 of 21)	192706.0	NM_175164	71302.0	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding	1.66802173995049	1.61818125831327	1.69921430466269	2.3433082631398	1.44952793370738	1.63073795703554	0.991265747440759	0.97408417590966	-1.94082906238998	0.105142663790823	0.505892575341078
Merged-chr13-105327099-4	chr13	105327014	105327214	+	854.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-32629.0	NM_001360891	71816.0	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-16215540-4	chr9	16215438	16215638	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080814, intron 2 of 24)	intron (NM_001080814, intron 2 of 24)	162693.0	NM_001080814	270120.0	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT atypical cadherin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-109478426-4	chr14	109478322	109478522	+	829.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR80A|LTR|ERVL	-564183.0	NM_199065	76965.0	Mm.257268	NM_199065	ENSMUSG00000075478	Slitrk1	3200001I04Rik	SLIT and NTRK-like family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-69515960-2	chr12	69515860	69516060	+	740.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40410.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-9243683-4	chr4	9243594	9243794	+	995.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	-25599.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-72170311-4	chr5	72170210	72170410	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2121.0	NM_001356614	27784.0	Mm.44223	NM_178599	ENSMUSG00000029213	Commd8	C77770|D5Buc26e	COMM domain containing 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91917934-4	chr16	91917811	91918011	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010587, exon 39 of 39)	3' UTR (NM_010587, exon 39 of 39)	13719.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-50138644-1	chr18	50138544	50138744	+	594.5	f0_balb.idr	intron (NM_008292, intron 2 of 23)	L1MB1|LINE|L1	10443.0	NM_008292	15488.0	Mm.277857	NM_008292	ENSMUSG00000024507	Hsd17b4	17-beta-HSD|17[b]-HSD|DBP|MFE-2|MFP2|MPF-2|Mfp-2|perMFE-2	hydroxysteroid (17-beta) dehydrogenase 4	protein-coding	-0.107108514569382	0.111269981824918	0.690829384643238	-0.0999364034456282	0.485896071761859	-0.0888106709415218	-0.0944008725926338	-0.099183359611836	-0.825444949474919	0.719878529752119	1
Merged-chr9-99145937-2	chr9	99145837	99146037	+	681.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5726.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-127447791-4	chr6	127447684	127447884	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346513, intron 1 of 5)	intron (NM_001346513, intron 1 of 5)	944.0	NM_001346513	101187.0	Mm.110818	NM_181402	ENSMUSG00000037997	Parp11	5330431N24Rik|AI851877|ARTD11|HIN1L|PARP-11	poly (ADP-ribose) polymerase family, member 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-126099188-4	chr7	126099120	126099320	+	868.6749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16809.0	NM_001358885	269994.0	Mm.39599	NM_001101488	ENSMUSG00000046182	Gsg1l	AI852434|C230098I05Rik|G630023A01Rik|Gm637|g1l	GSG1-like	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-106571768-2	chr11	106571668	106571868	+	728.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198292, intron 1 of 11)	intron (NM_198292, intron 1 of 11)	41162.0	NM_198292	21763.0	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-17982972-1	chr5	17982872	17983072	+	706.0	f0_balb.idr	intron (NM_001081143, intron 1 of 7)	intron (NM_001081143, intron 1 of 7)	20402.0	NM_001081143	242851.0	Mm.332230	NM_001081143	ENSMUSG00000028777	Gnat3	Ggust|Gtn	guanine nucleotide binding protein, alpha transducing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-105716925-4	chr4	105716825	105717025	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-524288.0	NR_151521	105244641.0	Mm.404914	NR_151521		Gm12724	-	predicted gene 12724	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-65531943-2	chr13	65531843	65532043	+	785.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	253089.0	NM_178364	170936.0	Mm.151546	NM_178364	ENSMUSG00000021514	Zfp369	B930030B22Rik|D230020H11Rik|NRIF2	zinc finger protein 369	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-41346630-4	chr4	41346503	41346703	+	974.974976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6A|LTR|ERVK	-2393.0	NM_001355509	67123.0	Mm.289795	NM_023305	ENSMUSG00000028437	Ubap1	2700092A01Rik|NAG20|UBAP-1|Ubap	ubiquitin-associated protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-78245631-7	chr11	78245493	78245693	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009143)	promoter-TSS (NM_009143)	110.0	NM_009297	20926.0	Mm.20755	NM_009297	ENSMUSG00000002052	Supt6	5131400N11Rik|AI132449|SPT6|Supt6h|mKIAA0162	suppressor of Ty 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-98045990-2	chr3	98045890	98046090	+	865.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010928, intron 1 of 33)	intron (NM_010928, intron 1 of 33)	32452.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117961773-2	chr11	117961673	117961873	+	760.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	7593.0	NM_007707	12702.0	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-98943846-2	chr7	98943746	98943946	+	678.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 12 of 14)	intron (NM_178635, intron 12 of 14)	105001.0	NM_001285795	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	-0.638360162809124	-0.89277980288558	-0.900549497775389	-0.902822531543749	-0.906029637799108	-0.890076978767009	-0.317069617558184	-0.902425644546454	1.24623438440297	0.687920303240504	1
Merged-chr17-34287898-4	chr17	34287817	34288017	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010378)	promoter-TSS (NM_010378)	-146.0	NM_010378	14960.0	Mm.235338	NM_010378	ENSMUSG00000036594	H2-Aa	Aalpha|H-2Aa|H2Aa|I-Aalpha|IAalpha|Ia-1|Ia1	histocompatibility 2, class II antigen A, alpha	protein-coding	7.76044185919938	8.02110811042269	7.72246997436145	7.77540017088278	7.96195179443115	7.88365780896572	8.08337377170177	7.80147961659726	0.118375276483419	0.37675298163688	0.8699311886157
Merged-chr12-98267059-2	chr12	98266959	98267159	+	803.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-1576.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-140173529-1	chr4	140173429	140173629	+	1000.0	f1_balb.idr	intron (NM_198610, intron 1 of 9)	intron (NM_198610, intron 1 of 9)	30656.0	NR_153821	102636673.0	Mm.449180	NR_153821		Gm13029	Gm33676	predicted gene 13029	ncRNA	2.11648095921403	1.42258018450601	1.35659022631692	3.43216672226087	3.40409861332674	4.76372655799012	2.1771204173474	3.3793903533138	2.1604938666202	0.134064273129951	0.571666672850202
Merged-chr5-17999860-4	chr5	17999760	17999960	+	981.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081143, intron 4 of 7)	intron (NM_001081143, intron 4 of 7)	37290.0	NM_001081143	242851.0	Mm.332230	NM_001081143	ENSMUSG00000028777	Gnat3	Ggust|Gtn	guanine nucleotide binding protein, alpha transducing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-72717179-2	chr1	72717079	72717279	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5919.0	NM_009084	19981.0	Mm.21529	NM_009084	ENSMUSG00000046330	Rpl37a	-	ribosomal protein L37a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-16524538-3	chr16	16524444	16524644	+	724.472229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301817, intron 1 of 16)	intron (NM_001301817, intron 1 of 16)	2867.0	NM_001301818	224014.0	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4474191-1	chr16	4474091	4474291	+	691.0	f1_c57bl6.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	48884.0	NM_001347162	106393.0	Mm.35811	NM_175347	ENSMUSG00000022519	Srl	9830004M20Rik|AW108387|sar	sarcalumenin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-65881912-2	chr5	65881812	65882012	+	723.900024	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081105, intron 1 of 2)	intron (NM_001081105, intron 1 of 2)	18343.0	NM_001081105	74734.0	Mm.20323	NM_001081105	ENSMUSG00000029204	Rhoh	5830400A04Rik|AU019774|Arhh	ras homolog family member H	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-32100301-2	chr17	32100201	32100401	+	944.8000490000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-8878.0	NR_027316	435518.0	Mm.328944	NR_027316	ENSMUSG00000002791	Pdxk-ps	Gm9743	pyridoxal (pyridoxine, vitamin B6) kinase, pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-42346133-2	chr6	42346033	42346233	+	720.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3695.0	NM_001289619	22793.0	Mm.282303	NM_011777	ENSMUSG00000029860	Zyx	9530098H06Rik|R75157	zyxin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-42965446-3	chr15	42965369	42965569	+	756.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT2B1|LTR|ERVL	205349.0	NM_001357957	239405.0	Mm.193274	NM_172815	ENSMUSG00000051920	Rspo2	2610028F08Rik|AA673245|D430027K22|ftls	R-spondin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-110854994-4	chr12	110854887	110855087	+	988.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028365, intron 1 of 7)	intron (NM_028365, intron 1 of 7)	4708.0	NM_028365	72805.0	Mm.443524	NM_028365	ENSMUSG00000021271	Zfp839	2810455K09Rik	zinc finger protein 839	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-100191395-4	chr6	100191304	100191504	+	812.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	95954.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-107966629-2	chr4	107966529	107966729	+	771.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-1705.0	NM_146255	242607.0	Mm.192040	NM_146255	ENSMUSG00000008932	Slc1a7	A930031E15Rik|Eaat5	solute carrier family 1 (glutamate transporter), member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-59202370-6	chr3	59202249	59202449	+	762.56665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177855, intron 15 of 43)	intron (NM_177855, intron 15 of 43)	-7245.0	NM_001302203	84111.0	Mm.60267	NM_032399	ENSMUSG00000051431	Gpr87	-	G protein-coupled receptor 87	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-110396013-5	chr8	110395898	110396098	+	708.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172916, intron 12 of 86)	intron (NM_172916, intron 12 of 86)	106358.0	NR_105058	100861869.0	Mm.84499	NR_105058		Gm21283	-	predicted gene, 21283	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-89114231-2	chr17	89114131	89114331	+	620.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013523, intron 1 of 9)	intron (NM_013523, intron 1 of 9)	86444.0	NM_013523	14309.0	Mm.57155	NM_013523	ENSMUSG00000032937	Fshr	-	follicle stimulating hormone receptor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-82346908-4	chr15	82346870	82347070	+	863.035706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026914, intron 1 of 2)	intron (NM_026914, intron 1 of 2)	924.0	NM_026914	69029.0	Mm.260042	NM_026914	ENSMUSG00000022452	Smdt1	1500032L24Rik|Emre	single-pass membrane protein with aspartate rich tail 1	protein-coding	1.96208808713682	1.00726730888928	1.77805314679384	1.48807959849043	1.5422081880938	1.43512910595791	0.994150614379973	1.83526928532111	-0.409900374496832	0.738784765439614	0.998431161219273
Merged-chr6-4988784-1	chr6	4988684	4988884	+	592.333313	f0_balb.idr	intron (NM_181595, intron 2 of 15)	intron (NM_181595, intron 2 of 15)	85464.0	NM_181595	243725.0	Mm.332901	NM_181595	ENSMUSG00000032827	Ppp1r9a	2810430P21Rik|4930518N04Rik|5330407E15|A230094E16Rik|BB181831|NRB|mKIAA1222|neurabin-I	protein phosphatase 1, regulatory (inhibitor) subunit 9A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-75465648-2	chr11	75465548	75465748	+	681.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_030711, exon 3 of 3)	non-coding (NR_030711, exon 3 of 3)	1932.0	NR_029739	387141.0		NR_029739	ENSMUSG00000065529	Mir22	Mirn22|mmu-mir-22	microRNA 22	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-43607764-1	chr7	43607664	43607864	+	543.0	f1_balb.idr	intron (NM_001355131, intron 1 of 3)	intron (NM_001355131, intron 1 of 3)	595.0	NM_028913	74400.0	Mm.159188	NM_028913	ENSMUSG00000055102	Zfp819	4930427I11Rik|4933405K07Rik	zinc finger protein 819	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-24531232-3	chr6	24531129	24531329	+	711.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080847, intron 1 of 9)	intron (NM_080847, intron 1 of 9)	3085.0	NM_080847	78910.0	Mm.160150	NM_080847	ENSMUSG00000029685	Asb15	4930400E23Rik|Asb-15	ankyrin repeat and SOCS box-containing 15	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-117818190-2	chr10	117818090	117818290	+	876.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_024457, intron 6 of 7)	B1_Mm|SINE|Alu	-25485.0	NM_134010	103468.0	Mm.12568	NM_134010	ENSMUSG00000052798	Nup107	AW541137|C76801	nucleoporin 107	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-50705452-4	chr15	50705351	50705551	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310481, intron 4 of 5)	B3A|SINE|B2	183598.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-115020225-4	chr7	115020091	115020291	+	931.8250119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	68917.0	NR_040319	101786.0	Mm.395157	NR_040317	ENSMUSG00000108379	A730082K24Rik	AU044236	RIKEN cDNA A730082K24 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-5964229-4	chr19	5964125	5964325	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008893)	promoter-TSS (NM_008893)	-19.0	NM_008893	18969.0	Mm.209931	NM_008893	ENSMUSG00000024833	Pola2	AI573378	polymerase (DNA directed), alpha 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-99392141-4	chr12	99392052	99392252	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183186, intron 1 of 5)	CpG	57922.0	NM_183186	71375.0	Mm.341972	NM_183186	ENSMUSG00000033713	Foxn3	5430426H20Rik|AA589593|AW556347|Ches1|Ches1l|HTLFL1	forkhead box N3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-76228442-2	chr16	76228342	76228542	+	908.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	105829.0	NR_040575	78215.0	Mm.243885	NR_040575		4930578N18Rik	-	RIKEN cDNA 4930578N18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-53084507-2	chr4	53084407	53084607	+	895.8333130000001	f1_balb.idr|f1_c57bl6.idr	exon (NM_013454, exon 14 of 50)	exon (NM_013454, exon 14 of 50)	72627.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-61734425-3	chr2	61734318	61734518	+	755.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021526, intron 3 of 11)	intron (NM_021526, intron 3 of 11)	22724.0	NM_021526	59029.0	Mm.218198	NM_021526	ENSMUSG00000026914	Psmd14	2610312C03Rik|3200001M20Rik|AA986732|Pad1|Poh1|rpm11	proteasome (prosome, macropain) 26S subunit, non-ATPase, 14	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-54481889-3	chr4	54481790	54481990	+	712.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-466055.0	NM_172867	242466.0	Mm.102904	NM_172867	ENSMUSG00000060206	Zfp462	6030417H05|9430078C22Rik|Gt4-2|Zfpip	zinc finger protein 462	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-135189969-2	chr5	135189869	135190069	+	630.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011714, intron 1 of 18)	intron (NM_011714, intron 1 of 18)	2646.0	NM_011714	22385.0	Mm.40331	NM_011714	ENSMUSG00000002748	Baz1b	C87820|WSTF|Wbscr9	bromodomain adjacent to zinc finger domain, 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-121837079-4	chr5	121836972	121837172	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008507)	promoter-TSS (NM_008507)	-213.0	NM_008507	16923.0	Mm.65493	NM_008507	ENSMUSG00000042594	Sh2b3	AI429800|Lnk	SH2B adaptor protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-20313628-4	chr13	20313590	20313790	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 13 of 21)	intron (NM_080288, intron 13 of 21)	-159300.0	NM_198093	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-36763528-2	chr5	36763428	36763628	+	612.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14849.0	NM_133724	117197.0	Mm.46744	NM_133724	ENSMUSG00000060708	Bloc1s4	2610101N07Rik|Blos4|Cno	biogenesis of lysosomal organelles complex-1, subunit 4, cappuccino	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-89303525-2	chr11	89303426	89303626	+	711.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008711)	promoter-TSS (NM_008711)	-967.0	NM_008711	18121.0	Mm.135266	NM_008711	ENSMUSG00000048616	Nog	-	noggin	protein-coding	2.12870729145667	2.03998501433194	1.82943606514892	2.4179052882644	1.70792454764685	2.41188962875752	1.84317722975854	1.2194084776686	-0.66856231558782	0.503453366480429	0.939787919021146
Merged-chr16-93454422-2	chr16	93454322	93454522	+	973.833374	f1_balb.idr|f1_c57bl6.idr	intron (NR_040494, intron 1 of 2)	intron (NR_040494, intron 1 of 2)	4450.0	NR_040494	72264.0	Mm.396204	NR_040494	ENSMUSG00000099968	1700029J03Rik	-	RIKEN cDNA 1700029J03 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-20776840-4	chr10	20776717	20776917	+	933.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51739.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-35686878-2	chr7	35686778	35686978	+	853.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_178704, exon 19 of 19)	3' UTR (NM_178704, exon 19 of 19)	-39396.0	NM_019746	56330.0	Mm.371609	NM_019746	ENSMUSG00000030417	Pdcd5	2200003D22Rik|AA408513|Tfar19	programmed cell death 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-73008666-2	chr11	73008566	73008766	+	665.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008771, intron 3 of 11)	intron (NM_008771, intron 3 of 11)	9521.0	NM_008771	18436.0	Mm.25722	NM_008771	ENSMUSG00000020787	P2rx1	AI323649|BB122383|P2x|Pdcd3|RP-2	purinergic receptor P2X, ligand-gated ion channel, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-5099312-4	chr11	5099217	5099417	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001283063)	promoter-TSS (NM_001283063)	44.0	NM_177370	279766.0	Mm.260866	NM_177370	ENSMUSG00000034175	Rhbdd3	Ptag	rhomboid domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107535367-2	chr9	107535267	107535467	+	803.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_019704, intron 1 of 1)	intron (NM_019704, intron 1 of 1)	1422.0	NM_019704	56395.0	Mm.260153	NM_019704	ENSMUSG00000010045	Tmem115	C78915|Pl6|Pp6	transmembrane protein 115	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-46322380-2	chr19	46322280	46322480	+	954.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001347454, exon 6 of 18)	exon (NM_001347454, exon 6 of 18)	4486.0	NM_001347454	73728.0	Mm.268532	NM_028627	ENSMUSG00000037126	Psd	1110007H17Rik|A930015K15|Efa6|Efa6a|Psdl|mKIAA2011	pleckstrin and Sec7 domain containing	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-64703060-4	chr9	64702915	64703115	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001134399, intron 23 of 24)	intron (NM_001134399, intron 23 of 24)	34741.0	NM_017382	53869.0	Mm.1387	NM_017382	ENSMUSG00000004771	Rab11a	-	RAB11A, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-67025066-4	chr11	67024988	67025188	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291042)	promoter-TSS (NM_001291042)	-66.0	NM_001291042	338369.0	Mm.128138	NM_177392	ENSMUSG00000050270	Tmem220	-	transmembrane protein 220	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-62956209-2	chr14	62956109	62956309	+	567.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175546, intron 11 of 11)	intron (NM_175546, intron 11 of 11)	28301.0	NM_001037751	432867.0	Mm.99387	NM_001037751	ENSMUSG00000075574	Defb48	Defb42|EG432867	defensin beta 48	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122763803-5	chr5	122763835	122764035	+	774.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_145358, exon 2 of 16)	exon (NM_145358, exon 2 of 16)	15475.0	NM_001199676	207565.0	Mm.289237	NM_145358	ENSMUSG00000029471	Camkk2	6330570N16Rik|AW061083|mKIAA0787	calcium/calmodulin-dependent protein kinase kinase 2, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-70263459-2	chr9	70263359	70263559	+	655.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_181072, intron 1 of 27)	intron (NM_181072, intron 1 of 27)	56109.0	NM_181072	71602.0	Mm.249311	NM_181072	ENSMUSG00000032220	Myo1e	2310020N23Rik|9130023P14Rik|AA407778|myosin-1e|myr 3	myosin IE	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129515840-3	chr2	129515811	129516011	+	839.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177653, intron 1 of 6)	intron (NM_177653, intron 1 of 6)	20691.0	NM_177653	228592.0	Mm.452175	NM_177653	ENSMUSG00000043727	F830045P16Rik	Sirpb3	RIKEN cDNA F830045P16 gene	protein-coding	3.16942732498373	2.92515136754606	1.82508335072653	3.63191801054347	3.62591349938327	1.90654241567128	3.05556982897125	2.50814632008938	-0.176464113540905	0.822181550836044	0.998431161219273
Merged-chr19-34624929-2	chr19	34624829	34625029	+	629.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_053217, intron 2 of 2)	intron (NM_053217, intron 2 of 2)	4882.0	NM_001362130	112419.0	Mm.440727	NM_053217	ENSMUSG00000067297	Ifit1bl2	2010002M12Rik|AW412491|Ifit1b	interferon induced protein with tetratricopeptide repeats 1B like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-133601338-1	chr4	133601238	133601438	+	558.0	f1_c57bl6.idr	exon (NM_018754, exon 1 of 1)	exon (NM_018754, exon 1 of 1)	830.0	NM_018754	55948.0	Mm.44482	NM_018754	ENSMUSG00000047281	Sfn	Er|Mme1|Ywhas	stratifin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-74526719-3	chr11	74526610	74526810	+	653.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001015046, intron 2 of 24)	intron (NM_001015046, intron 2 of 24)	63448.0	NM_001015046	380711.0	Mm.425690	NM_001015046	ENSMUSG00000038807	Rap1gap2	AU067654|Garnl4|Gm1561|mKIAA1039	RAP1 GTPase activating protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-32595183-2	chr19	32595083	32595283	+	544.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001201470)	promoter-TSS (NM_001201470)	-532.0	NM_001201470	23972.0	Mm.203916	NM_011864	ENSMUSG00000024899	Papss2	1810018P12Rik|AI159688|AtpsU2|Atpsk2|Sk2|bm	3'-phosphoadenosine 5'-phosphosulfate synthase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-32553646-1	chr11	32553546	32553746	+	943.0	f1_balb.idr	intron (NM_009288, intron 1 of 18)	intron (NM_009288, intron 1 of 18)	20380.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	0.938620936975196	0.675033267155511	1.16079571124562	0.837944764292812	1.06762183133843	0.677453404784983	1.59333805639583	1.24659237499996	1.27888019777299	0.377202204474904	0.870098445774782
Merged-chr4-109703749-2	chr4	109703649	109703849	+	877.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007983, intron 1 of 18)	intron (NM_007983, intron 1 of 18)	27122.0	NM_007983	14084.0	Mm.318259	NM_007983	ENSMUSG00000010517	Faf1	AA408698|Dffrx|Fam	Fas-associated factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-138489544-4	chr3	138489468	138489668	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175224)	promoter-TSS (NM_175224)	-186.0	NM_175224	75624.0	Mm.26833	NM_175224	ENSMUSG00000005813	Metap1	1700029C17Rik|AW047992|mKIAA0094	methionyl aminopeptidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-20133138-4	chr11	20133040	20133240	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20189.0	NM_146243	66713.0	Mm.259045	NM_146243	ENSMUSG00000020152	Actr2	4921510D23Rik|AA409782|Arp2|D6Ertd746e	ARP2 actin-related protein 2	protein-coding	2.3435037297865	1.18185732179294	2.5590202089941	1.12011038359698	1.96242422207683	2.57943704298631	2.89362463698976	1.12501887424575	0.729799682537163	0.524379442989856	0.948340152465298
Merged-chr8-115160125-3	chr8	115159997	115160197	+	940.694458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019573, intron 8 of 8)	intron (NM_019573, intron 8 of 8)	546797.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-155945352-2	chr4	155945249	155945449	+	679.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_002889).2	promoter-TSS (NR_002889).2	-904.0	NR_002889	545056.0	Mm.266575	NR_002889		Gm5801	EG545056	ubiquitin-conjugating enzyme E2, J2 homolog pseudogene	pseudo	2.34444055085078	3.52404662821631	3.15469967678083	2.96955715817457	3.49477291387503	2.95195751959119	2.85252185949104	3.66054848783465	0.394859649489043	0.535959256071624	0.953316735671181
Merged-chr8-128594306-4	chr8	128594211	128594411	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-91343.0	NM_010578	16412.0	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	4.04286521843144	3.67571279556817	3.26525835511843	3.6842591994658	4.19873234758244	3.61140288345172	3.29160770435238	4.0122359181583	0.191930006561724	0.704659085630497	0.998431161219273
Merged-chr9-41158283-4	chr9	41158158	41158358	+	974.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_176860)	promoter-TSS (NM_176860)	-196.0	NM_176860	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	4.7711359677637	3.09105676581177	3.22086455951436	4.22212975429155	3.74787229494594	2.40982511384684	4.16448132002571	3.34329058441506	-0.647322900573735	0.291069318546401	0.795742750399449
Merged-chr4-132816183-3	chr4	132816081	132816281	+	566.5	f0_balb.idr|f0_c57.idr|f1_balb.idr	Intergenic	Intergenic	-19817.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-74368828-2	chr1	74368728	74368928	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001033345, exon 10 of 10)	exon (NM_001033345, exon 10 of 10)	-6375.0	NM_013612	18173.0	Mm.2913	NM_013612	ENSMUSG00000026177	Slc11a1	Bcg|Ity|Ity1|Lsh|Nramp|Nramp1|ity	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-17714595-4	chr14	17714443	17714643	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113417, intron 1 of 9)	intron (NM_001113417, intron 1 of 9)	53583.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70813179-4	chr11	70813067	70813267	+	891.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001045526)	promoter-TSS (NM_001045526)	-606.0	NM_001045526	327957.0	Mm.164325	NM_001045526	ENSMUSG00000057135	Scimp	A430084P05Rik	SLP adaptor and CSK interacting membrane protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-36014277-4	chr4	36014168	36014368	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166000, intron 7 of 8)	intron (NM_001166000, intron 7 of 8)	-169064.0	NM_175516	242384.0	Mm.132507	NM_175516	ENSMUSG00000045083	Lingo2	B230217C06Rik|Lern3|Lrrn6c	leucine rich repeat and Ig domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-63078195-4	chr11	63078091	63078291	+	934.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027660, intron 4 of 7)	intron (NM_027660, intron 4 of 7)	16532.0	NM_027660	71062.0	Mm.23534	NM_027660	ENSMUSG00000042189	Tekt3	4933407G07Rik	tektin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-48808433-3	chr11	48808339	48808539	+	673.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145377, intron 4 of 5)	intron (NM_145377, intron 4 of 5)	5300.0	NR_028564	100216540.0		NR_028564	ENSMUSG00000064780	Snord95	-	small nucleolar RNA, C/D box 95	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-86885120-1	chr4	86885020	86885220	+	569.0	f0_c57.idr	intron (NM_001290543, intron 1 of 5)	B3|SINE|B2	10706.0	NM_139306	230379.0	Mm.45019	NM_139306	ENSMUSG00000038007	Acer2	2410116I05Rik|Asah3l|CRG-L1|maCER2	alkaline ceramidase 2	protein-coding	2.17919213451863	1.67575771559933	2.53675599467016	1.39269207981183	1.91263497768198	1.21745941404691	1.80313010231831	2.39786708139395	-0.31476395335338	0.764351275131819	0.998431161219273
Merged-chr8-25102157-8	chr8	25102150	25102350	+	950.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031257)	promoter-TSS (NM_031257)	71.0	NR_155282	74744.0	Mm.117802	NR_155282		5830408C22Rik	2700026D01Rik	RIKEN cDNA 5830408C22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-113596165-4	chr13	113596058	113596258	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130796, intron 1 of 1)	intron (NM_130796, intron 1 of 1)	22406.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-52798878-1	chr1	52798778	52798978	+	585.0	f1_c57bl6.idr	intron (NM_008384, intron 2 of 5)	intron (NM_008384, intron 2 of 5)	18810.0	NM_008384	16329.0	Mm.917	NM_008384	ENSMUSG00000026102	Inpp1	2300002C06Rik|AV137389	inositol polyphosphate-1-phosphatase	protein-coding	-0.0384453211628079	0.322695540096175	-0.170553505261975	-0.174201506497765	-0.179352770511654	0.453756978382056	-0.169510211127634	-0.0083368357442403	0.427118371005524	0.848154903692401	1
Merged-chr3-157947087-4	chr3	157947014	157947214	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001359909, exon 1 of 12)	5' UTR (NM_001359909, exon 1 of 12)	114.0	NM_001013806	433667.0	Mm.265806	NM_001013806	ENSMUSG00000039988	Ankrd13c	AI505652|AU022220	ankyrin repeat domain 13c	protein-coding	4.92602003003281	3.93071407049269	4.85307481628454	4.16998533718835	4.61933328932429	4.19871430500711	5.38873186399844	3.06576182496035	0.0223947897007485	0.964159795492724	0.998431161219273
Merged-chr4-150134244-1	chr4	150134144	150134344	+	544.0	f1_c57bl6.idr	intron (NM_019741, intron 6 of 13)	RSINE1|SINE|B4	-14728.0	NM_001085529	435818.0	Mm.359648	NM_001085529	ENSMUSG00000062064	Slc2a7	-	solute carrier family 2 (facilitated glucose transporter), member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-117282758-4	chr8	117282667	117282867	+	976.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	25748.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-182501028-2	chr1	182500928	182501128	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009794, intron 2 of 20)	intron (NM_009794, intron 2 of 20)	16582.0	NM_009794	12334.0	Mm.19306	NM_009794	ENSMUSG00000026509	Capn2	AI326419|CALP80|Capa-2|Capa2|m-calpain|m-calpin	calpain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-25974004-1	chr8	25973904	25974104	+	643.666687	f1_balb.idr	intron (NM_029884, intron 1 of 17)	intron (NM_029884, intron 1 of 17)	2740.0	NM_029884	52120.0	Mm.28326	NM_029884	ENSMUSG00000037260	Hgsnat	9430010M12Rik|AW208455|D8Ertd354e|Tmem76	heparan-alpha-glucosaminide N-acetyltransferase	protein-coding	2.73627575244507	3.38324630618676	2.7223183820302	3.6115418091357	2.95649857695617	3.72431228651555	2.87665731166035	3.43265474392865	0.195567994196068	0.752895889623847	0.998431161219273
Merged-chr10-44448258-4	chr10	44448164	44448364	+	926.81665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007548, intron 3 of 6)	intron (NM_007548, intron 3 of 6)	10484.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-112665516-2	chr13	112665416	112665616	+	744.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_178746, intron 1 of 14)	intron (NM_178746, intron 1 of 14)	4750.0	NM_178746	268706.0	Mm.40834	NM_175376	ENSMUSG00000047789	Slc38a9	4833412L08Rik|6720411P22Rik|9130023D20Rik|9430067K09Rik|A730092C09	solute carrier family 38, member 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-51595328-4	chr10	51595236	51595436	+	958.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4876.0	NM_029894	77296.0	Mm.30588	NM_029894	ENSMUSG00000019909	Fam162b	9430073N08Rik	family with sequence similarity 162, member B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-56723473-4	chr19	56723341	56723541	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007419, exon 1 of 1)	exon (NM_007419, exon 1 of 1)	1069.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-6465319-3	chr11	6465205	6465405	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10771.0	NM_011221	19291.0	Mm.296150	NM_011221	ENSMUSG00000094483	Purb	2310015K15Rik|AA114818|Cager-2|D11Bwg0414e	purine rich element binding protein B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-148533907-4	chr2	148533805	148534005	+	680.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-90370.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-117357691-4	chr5	117357594	117357794	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021539, intron 1 of 8)	CpG	389.0	NM_021539	59043.0	Mm.28489	NM_021539	ENSMUSG00000029364	Wsb2	AA673511|Swip2|WSB-2	WD repeat and SOCS box-containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-103490562-2	chr9	103490462	103490662	+	861.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359465, intron 3 of 4)	intron (NM_001359465, intron 3 of 4)	-10234.0	NM_001002896	107993.0	Mm.335403	NM_001002896	ENSMUSG00000032556	Bfsp2	AI448593|CP49	beaded filament structural protein 2, phakinin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-38650728-4	chr6	38650618	38650818	+	930.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12351.0	NM_001101507	665180.0	Mm.349066	NM_001101507	ENSMUSG00000079598	Clec2l	AI414054|AW122724|Gm1064	C-type lectin domain family 2, member L	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-150218752-1	chr4	150218652	150218852	+	559.0	f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-17617.0	NM_009802	12353.0	Mm.232523	NM_009802	ENSMUSG00000028972	Car6	Ca6|DOC1	carbonic anhydrase 6	protein-coding	-1.50811478453619	-0.99851579554048	-1.48484165847197	-1.49312904261012	-1.50577282675516	-1.47256636097272	-1.48255773576353	-1.49164560481169	-2.24133836997777	0.518237887813808	1
Merged-chr18-14782143-2	chr18	14782041	14782241	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F1|SINE|Alu	-1104.0	NM_001100449	72504.0	Mm.312233	NM_001100449	ENSMUSG00000054321	Taf4b	105kDa|2610524B04Rik|4932409F03Rik|AW987595|TAFII-105|TAFII105|Taf2c2	TATA-box binding protein associated factor 4b	protein-coding	-0.469770641461414	-0.523247105022711	-0.695342270562258	-0.697221188519522	-0.57384242569234	-0.519266774029821	-0.694802148704155	-0.552163181938916	0.103252624086864	0.966636551820262	1
Merged-chr2-71211737-4	chr2	71211669	71211869	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001198878)	promoter-TSS (NM_001198878)	63.0	NM_001198876	13427.0	Mm.249479	NM_010064	ENSMUSG00000027012	Dync1i2	3110079H08Rik|AW554389|Dncic2	dynein cytoplasmic 1 intermediate chain 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-30308846-3	chr16	30308721	30308921	+	786.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008148, exon 2 of 2)	exon (NM_008148, exon 2 of 2)	1960.0	NM_008148	14729.0	Mm.3519	NM_008148	ENSMUSG00000047953	Gp5	GPV	glycoprotein 5 (platelet)	protein-coding	1.7731409254801	1.2614649070274	0.999606757203554	1.87694401934283	1.45848380146316	2.02721172000162	1.00393325987654	2.07041757932679	0.559708729312469	0.647678746887996	0.984971605872381
Merged-chr13-13589591-4	chr13	13589494	13589694	+	929.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010748)	promoter-TSS (NM_010748)	-815.0	NM_010748	17101.0	Mm.342337	NM_010748	ENSMUSG00000019726	Lyst	D13Sfk13|beige|bg	lysosomal trafficking regulator	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-101955935-2	chr12	101955774	101955974	+	687.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_029705, intron 1 of 10)	Lx|LINE|L1	2369.0	NM_029705	110616.0	Mm.271914	NM_029705	ENSMUSG00000021189	Atxn3	2210008M02Rik|AI463012|AI647473|ATX3|MJD1|Mjd|Sca3|ataxin-3	ataxin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-126262213-4	chr4	126262113	126262313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013718)	promoter-TSS (NM_013718)	-192.0	NM_013718	27096.0	Mm.8392	NM_013718	ENSMUSG00000028847	Trappc3	1110058K12Rik|AI835942|AU019197|Bet3	trafficking protein particle complex 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-125432630-4	chr1	125432528	125432728	+	828.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205386, intron 2 of 12)	intron (NM_001205386, intron 2 of 12)	3099.0	NM_001205386	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-191325369-2	chr1	191325269	191325469	+	739.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025864)	promoter-TSS (NM_025864)	-596.0	NM_025864	66950.0	Mm.236300	NM_025864	ENSMUSG00000026627	Tmem206	2310028N02Rik|AI118576	transmembrane protein 206	protein-coding	0.894908656182662	0.418066286032649	0.409747639392486	0.966834334759102	0.801922575152748	0.419933893536021	0.411587183660958	1.25192028492866	0.395029816919155	0.826771509708113	1
Merged-chr12-76373162-3	chr12	76372976	76373176	+	915.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178744, intron 1 of 1)	PB1D10|SINE|Alu	2810.0	NM_178744	268564.0	Mm.77065	NM_178744	ENSMUSG00000033454	Zbtb1	9430077A12|AI256369|Bsg2|C430003J21Rik	zinc finger and BTB domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-41088139-4	chr9	41088056	41088256	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176860, intron 1 of 13)	L2b|LINE|L2	-8650.0	NM_001357412	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70439391-2	chr11	70439291	70439491	+	704.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145429, intron 11 of 14)	intron (NM_145429, intron 11 of 14)	1136.0	NR_106064	102465670.0		NR_106064	ENSMUSG00000099109	Mir7115	Gm27902|mmu-mir-7115	microRNA 7115	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-84946094-2	chr15	84945994	84946194	+	701.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001033273, exon 10 of 10)	3' UTR (NM_001033273, exon 10 of 10)	5529.0	NR_037206	100526461.0		NR_037206	ENSMUSG00000080441	Mir1249	mir-1249|mmu-mir-1249	microRNA 1249	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-45794745-2	chr4	45794645	45794845	+	643.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4277.0	NM_028270	72535.0	Mm.331583	NM_028270	ENSMUSG00000035561	Aldh1b1	2700007F14Rik	aldehyde dehydrogenase 1 family, member B1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-102147360-2	chr15	102147260	102147460	+	776.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008344, intron 1 of 3)	B3|SINE|B2	3174.0	NM_008344	16012.0	Mm.358609	NM_008344	ENSMUSG00000023046	Igfbp6	IGFBP-6	insulin-like growth factor binding protein 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-36659365-3	chr16	36659249	36659449	+	565.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_019388, intron 1 of 7)	intron (NM_019388, intron 1 of 7)	6728.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-9548826-4	chr1	9548724	9548924	+	983.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357377, intron 2 of 14)	intron (NM_001357377, intron 2 of 14)	876.0	NM_001357376	76187.0	Mm.28514	NM_175236	ENSMUSG00000025911	Adhfe1	6330565B14Rik|AI043035|Adh8|HOT	alcohol dehydrogenase, iron containing, 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-102100285-4	chr7	102100164	102100364	+	879.2291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291354)	promoter-TSS (NM_001291354)	-35.0	NM_007491	11875.0	Mm.2816	NM_007491	ENSMUSG00000070424	Art5	ARTC5|Yac-2	ADP-ribosyltransferase 5	protein-coding	-1.31349849087795	-1.28274354783242	-1.29349452597086	-1.3023256995151	-1.3130151546297	-1.28041376602105	-0.694015972326031	-1.30074492367298	2.57396649482007	0.456321314346772	1
Merged-chr2-57335601-3	chr2	57335517	57335717	+	765.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010274, intron 6 of 16)	intron (NM_010274, intron 6 of 16)	97235.0	NM_010274	14571.0	Mm.3711	NM_010274	ENSMUSG00000026827	Gpd2	AA408484|AI448216|AU021455|AW494132|GPDH|Gdm1|Gpd-m|Gpdh-m|TISP38	glycerol phosphate dehydrogenase 2, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-28765361-4	chr7	28765276	28765476	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001306222, intron 1 of 5)	L2a|LINE|L2	1268.0	NM_001306222	18036.0	Mm.220333	NM_010908	ENSMUSG00000030595	Nfkbib	I(Kappa)B(beta)|I-kappa-B-beta|IKB-beta|IKappaBbeta|IkB|IkBb|NF-kappa-BIB|ikB-B	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-45291842-4	chr14	45291721	45291921	+	975.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015774, intron 13 of 15)	intron (NM_015774, intron 13 of 15)	26751.0	NM_015774	50527.0	Mm.387108	NM_015774	ENSMUSG00000021831	Ero1l	ERO1-L|Ero1a	ERO1-like (S. cerevisiae)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-10167608-2	chr11	10167508	10167708	+	738.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	-946408.0	NM_177033	319922.0	Mm.337851	NM_177033	ENSMUSG00000050830	Vwc2	A930041G11Rik|G11|PSST739|UNQ739|cradin	von Willebrand factor C domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-111931482-2	chr12	111931382	111931582	+	582.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13000.0	NR_029464	77675.0	Mm.98331	NR_029464	ENSMUSG00000113769	5033406O09Rik	9130204G15Rik	RIKEN cDNA 5033406O09 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-91935357-3	chr16	91935266	91935466	+	857.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-3736.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-41295962-1	chr12	41295862	41296062	+	626.0	f0_balb.idr	intron (NM_053122, intron 4 of 6)	intron (NM_053122, intron 4 of 6)	190095.0	NM_001271708	16981.0	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-99086503-2	chr10	99086403	99086603	+	674.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-20579.0	NM_027740	382406.0	Mm.440656	NM_027740	ENSMUSG00000019952	Poc1b	4933430F16Rik|Wdr51b	POC1 centriolar protein B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167081892-2	chr2	167081792	167081992	+	631.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16599.0	NR_028540	100217443.0		NR_028540		Snord12	MBII-99	small nucleolar RNA, C/D box 12	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-89393788-4	chr3	89393695	89393895	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040404)	promoter-TSS (NR_040404)	-417.0	NM_009565	22724.0	Mm.262184	NM_009565	ENSMUSG00000028042	Zbtb7b	Thpok|Zfp67|c-Krox	zinc finger and BTB domain containing 7B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-134513671-1	chr4	134513571	134513771	+	641.0	f1_c57bl6.idr	intron (NM_001081099, intron 1 of 2)	B2_Mm2|SINE|B2	2672.0	NM_001081099	69885.0	Mm.141592	NM_001081099	ENSMUSG00000078521	Aunip	2610002D18Rik|Clhc1	aurora kinase A and ninein interacting protein	protein-coding	-1.50485614052657	-1.4728793633067	-1.48254940467209	-1.49049266456696	-1.5026114298908	-1.47078382500327	-1.32820642235787	-1.18476303102282	2.06059569883262	0.550131326880388	1
Merged-chr3-96551461-2	chr3	96551361	96551561	+	801.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6496.0	NM_023719	56338.0	Mm.410189	NM_023719	ENSMUSG00000038393	Txnip	1200008J08Rik|AA682105|Hyplip1|THIF|Tbp-2|VDUP1	thioredoxin interacting protein	protein-coding	0.952707238118768	0.821360281630748	1.87143366023979	1.42607536232798	1.11053993638496	0.824585010259597	1.35491290057837	1.64579748261031	-0.270031751244043	0.842195755245842	0.998431161219273
Merged-chr4-123663056-4	chr4	123662955	123663155	+	925.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199137, intron 1 of 92)	intron (NM_001199137, intron 1 of 92)	-2826.0	NR_136925	102633214.0	Mm.399387	NR_136925		Gm12925	-	predicted gene 12925	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-127312438-4	chr10	127312315	127312515	+	964.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001171582)	promoter-TSS (NM_001171582)	-629.0	NM_001171582	216443.0	Mm.28173	NM_001003913	ENSMUSG00000040354	Mars	Metrs|Mtrns	methionine-tRNA synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-100462296-1	chr15	100462196	100462396	+	685.0	f1_balb.idr	Intergenic	Intergenic	-6715.0	NM_001357983	68614.0	Mm.275272	NM_134093	ENSMUSG00000037353	Letmd1	1110019O13Rik|AI593524|BB130465|BB235638|HCCR-2|HCCR1|MCC-32|Mccr	LETM1 domain containing 1	protein-coding	1.58737287227828	1.7640264403431	1.84057838995904	1.35088857752196	1.59903649068729	2.04134337864863	2.07934672729859	1.79942506931885	0.77204419409443	0.447507925883426	0.914498173479176
Merged-chr19-6074103-4	chr19	6073992	6074192	+	974.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081041, intron 2 of 9)	intron (NM_001081041, intron 2 of 9)	3095.0	NM_001081041	68505.0	Mm.227361	NM_001081041	ENSMUSG00000024799	Vps51	1110014N23Rik|3110057M17Rik|AI837850|Ffr	VPS51 GARP complex subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-34248783-4	chr19	34248680	34248880	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007392, intron 3 of 8)	intron (NM_007392, intron 3 of 8)	6593.0	NM_007392	11475.0	Mm.213025	NM_007392	ENSMUSG00000035783	Acta2	0610041G09Rik|Actvs|SMAalpha|SMalphaA|a-SMA|alphaSMA	actin, alpha 2, smooth muscle, aorta	protein-coding	3.14257787942426	4.37547548802629	4.52945196604023	4.17939590258698	3.90213686668398	4.51129030996083	3.8901835125064	3.23940175731955	-0.260224147580279	0.607259144185021	0.974576632476413
Merged-chr17-50070320-2	chr17	50070220	50070420	+	548.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_181397, intron 4 of 9)	intron (NM_181397, intron 4 of 9)	120177.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-142388794-3	chr7	142388684	142388884	+	996.444458	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009983)	promoter-TSS (NM_009983)	-914.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	0.700580456777435	1.25117442862097	0.556634459434622	0.548176664797684	0.974940822184356	1.4877813623445	0.559035898963254	1.15824379026042	1.34103007974103	0.400363050915157	0.885176145862419
Merged-chr7-4228509-4	chr7	4228380	4228580	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx10|LINE|L1	-9274.0	NM_001081239	232801.0	Mm.258061	NM_001081239	ENSMUSG00000070873	Lilra5	E030017K20|EG232801|Gm4878|Lilrc1	leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 5	protein-coding	6.07675549061753	5.06036576959136	5.37455155421647	5.8482354967678	5.43515295443787	4.74901975333131	5.28210954850223	5.56686669583986	-0.408311118656792	0.193030271612414	0.671946962903019
Merged-chr15-37135799-3	chr15	37135703	37135903	+	875.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-97233.0	NM_026496	252973.0	Mm.244612	NM_026496	ENSMUSG00000022286	Grhl2	0610015A08Rik|BOM|Tcfcp2l3|clft3	grainyhead like transcription factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-117195345-2	chr11	117195245	117195445	+	830.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4316.0	NM_001113486	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-64299079-4	chr1	64298958	64299158	+	912.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-177669.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123626853-3	chr5	123626761	123626961	+	817.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359223, intron 10 of 19)	intron (NM_001359223, intron 10 of 19)	-53846.0	NM_029929	77573.0	Mm.41372	NM_029929	ENSMUSG00000029434	Vps33a	3830421M04Rik|AI503300|AW048546|AW554476|bf	VPS33A CORVET/HOPS core subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-28218255-2	chr17	28218155	28218355	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027185, intron 3 of 10)	intron (NM_027185, intron 3 of 10)	10477.0	NM_027185	23853.0	Mm.204731	NM_027185	ENSMUSG00000002257	Def6	2410003F05Rik|6430538D02Rik|AV094905|Ibp|Slat|Slat2|Slat6	differentially expressed in FDCP 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-4425988-2	chr16	4425888	4426088	+	669.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	HAL1ME|LINE|L1	-5490.0	NM_009624	11515.0	Mm.439750	NM_009624	ENSMUSG00000005580	Adcy9	AC9|ACtp10|AW125421|D16Wsu65e|mKIAA0520	adenylate cyclase 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-12306750-3	chr15	12306652	12306852	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14744.0	NM_025673	66629.0	Mm.157655	NM_025673	ENSMUSG00000022200	Golph3	4733401N08Rik|5730410D03Rik|AW413496	golgi phosphoprotein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-88082000-4	chr3	88081923	88082123	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033484)	promoter-TSS (NM_001033484)	-28.0	NM_001033484	404710.0	Mm.331133	NM_001033484	ENSMUSG00000028068	Iqgap3	AI593484|D030034H08	IQ motif containing GTPase activating protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-63782267-2	chr9	63782167	63782367	+	593.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24273.0	NM_016769	17127.0	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-45506991-4	chr17	45506881	45507081	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_198608, exon 1 of 22)	exon (NM_198608, exon 1 of 22)	140.0	NM_198608	224805.0	Mm.329063	NM_198608	ENSMUSG00000023938	Aars2	Aarsl|AlaRS|Gm89	alanyl-tRNA synthetase 2, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-164936134-4	chr2	164935999	164936199	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1H1|LTR|ERVL-MaLR	-12120.0	NM_013599	17395.0	Mm.4406	NM_013599	ENSMUSG00000017737	Mmp9	AW743869|B/MMP9|Clg4b|Gel B|MMP-9|pro-MMP-9	matrix metallopeptidase 9	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-35030518-3	chr15	35030418	35030618	+	961.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357821, intron 7 of 11)	intron (NM_001357821, intron 7 of 11)	125288.0	NM_001357821	56274.0	Mm.262330	NM_019635	ENSMUSG00000022329	Stk3	0610042I06Rik|MST|Mst2|Mst3|Ste20|mess1	serine/threonine kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-46461592-4	chr11	46461476	46461676	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134250, intron 3 of 6)	ID_B1|SINE|B4	6645.0	NM_134250	171285.0	Mm.72168	NM_134250	ENSMUSG00000020399	Havcr2	TIM-3|Tim3|Timd3	hepatitis A virus cellular receptor 2	protein-coding	3.70991210846452	3.57277701755772	4.20030244105776	3.69560884375248	3.97342233448836	4.30733091687092	3.97961174214834	4.85342831251043	0.69853476895971	0.126698196196482	0.55689342891744
Merged-chr6-24967869-1	chr6	24967769	24967969	+	585.0	f0_balb.idr	Intergenic	RSINE1|SINE|B4	-11744.0	NM_177013	319832.0	Mm.127446	NM_177013	ENSMUSG00000048022	Tmem229a	6332401O19Rik	transmembrane protein 229A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31432204-1	chr14	31432104	31432304	+	547.0	f1_balb.idr	intron (NM_011894, intron 2 of 8)	intron (NM_011894, intron 2 of 8)	3896.0	NM_011894	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	1.35675887884829	2.41876686375151	1.01926845089125	1.86399744991002	1.36806823877693	2.43845514658569	1.02484794340594	1.87465476797803	0.036561997337808	0.975429657499244	0.998431161219273
Merged-chr11-115297106-2	chr11	115296988	115297188	+	546.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178035, intron 1 of 5)	intron (NM_178035, intron 1 of 5)	458.0	NM_178035	328035.0	Mm.21995	NM_178035	ENSMUSG00000044788	Fads6	BC044804	fatty acid desaturase domain family, member 6	protein-coding	1.39781556581771	2.37015559604243	0.915809034154896	1.95367867241751	1.08478124319688	2.01050376455395	0.920700953554971	1.32692998604297	-1.07990191308833	0.388484594259679	0.878226007146269
Merged-chr1-39761563-3	chr1	39761455	39761655	+	897.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40566.0	NM_001145660	619289.0	Mm.334107	NM_001145660	ENSMUSG00000057173	Rfx8	4933400N17Rik	regulatory factor X 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-67195257-3	chr6	67195164	67195364	+	932.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-71715.0	NM_001113566	66870.0	Mm.240490	NM_025814	ENSMUSG00000036371	Serbp1	1200009K13Rik|9330147J08Rik|AL022786|Pairbp1	serpine1 mRNA binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-70205107-4	chr14	70204990	70205190	+	981.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271408)	promoter-TSS (NM_001271408)	-467.0	NM_001271408	20410.0	Mm.5068	NM_011366	ENSMUSG00000022091	Sorbs3	SCAM-1|SH3P3|Sh3d4|vinexin-g	sorbin and SH3 domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-135282318-2	chr1	135282218	135282418	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159624, intron 1 of 9)	intron (NM_001159624, intron 1 of 9)	1766.0	NM_145417	215615.0	Mm.291048	NM_145417	ENSMUSG00000041926	Rnpep	-	arginyl aminopeptidase (aminopeptidase B)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-59845926-4	chr5	59845829	59846029	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	140073.0	NR_040683	71057.0	Mm.50817	NR_040682	ENSMUSG00000106013	4933402J10Rik	-	RIKEN cDNA 4933402J10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-50633339-2	chr9	50633239	50633439	+	720.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15875.0	NM_001134902	270156.0	Mm.335149	NM_212449	ENSMUSG00000059820	AU019823	Gm639	expressed sequence AU019823	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-62609242-4	chr11	62609147	62609347	+	940.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_198861, exon 3 of 4)	exon (NM_198861, exon 3 of 4)	4717.0	NR_028541	100217444.0		NR_028541		Snord65	MBII-135|snoRNA135	small nucleolar RNA, C/D box 65	snoRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-35722953-1	chr5	35722853	35723053	+	713.0	f0_balb.idr	intron (NM_001359895, intron 2 of 17)	intron (NM_001359895, intron 2 of 17)	6323.0	NM_194344	231147.0	Mm.290429	NM_194344	ENSMUSG00000036553	Sh3tc1	4631428G15|BC024909	SH3 domain and tetratricopeptide repeats 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-8968251-2	chr19	8968151	8968351	+	925.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_026007, exon 2 of 10)	exon (NM_026007, exon 2 of 10)	1210.0	NM_026007	67160.0	Mm.247762	NM_026007	ENSMUSG00000071644	Eef1g	2610301D06Rik|AA407312|EF1G	eukaryotic translation elongation factor 1 gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-83640795-4	chr17	83640701	83640901	+	998.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8906.0	NM_153512	225030.0	Mm.223506	NM_153512	ENSMUSG00000045053	Kcng3	KV6.3|Kv10.1a|Kv10.1b	potassium voltage-gated channel, subfamily G, member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-13429939-4	chr10	13429852	13430052	+	845.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195065, intron 1 of 12)	intron (NM_001195065, intron 1 of 12)	-40982.0	NM_001195066	215789.0	Mm.283359	NM_001033257	ENSMUSG00000062866	Phactr2	AV158170|BC012871	phosphatase and actin regulator 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-89412390-4	chr7	89412301	89412501	+	708.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8035.0	NM_008055	14366.0	Mm.86755	NM_008055	ENSMUSG00000049791	Fzd4	Fz4	frizzled class receptor 4	protein-coding	2.16119085796897	1.05445299592611	1.26829460852404	1.0150770800003	2.24885293824722	1.52277006925301	2.1230393511837	1.72360568298225	1.29261646838614	0.278206221915637	0.781792858737504
Merged-chr2-132107790-4	chr2	132107689	132107889	+	912.68335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355430, intron 1 of 15)	intron (NM_001355430, intron 1 of 15)	37319.0	NM_001355431	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3872328-2	chr12	3872228	3872428	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007872, intron 4 of 22)	intron (NM_007872, intron 4 of 22)	-10084.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-35065095-4	chr7	35064982	35065182	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8516.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-98514994-4	chr10	98514901	98515101	+	902.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-163134.0	NR_045179	667438.0	Mm.414522	NR_045179	ENSMUSG00000112896	Gm8633	EG667438	predicted gene 8633	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-27018053-2	chr2	27017953	27018153	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001243240)	TTS (NM_001243240)	8127.0	NM_001243239	381356.0	Mm.150270	NM_029862	ENSMUSG00000015488	Cacfd1	5930434B04Rik|mFwe	calcium channel flower domain containing 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-24373563-2	chr7	24373474	24373674	+	840.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163510, intron 1 of 8)	intron (NM_001163510, intron 1 of 8)	3311.0	NM_008433	16534.0	Mm.9911	NM_008433	ENSMUSG00000054342	Kcnn4	IK1|IKCA1|KCA4|KCa3.1|SK4|SKCas|mIKCa1	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-53316180-2	chr19	53316080	53316280	+	786.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360348, intron 1 of 5)	B4A|SINE|B4	4735.0	NM_001360348	17859.0	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16264676-1	chr7	16264576	16264776	+	636.0	f0_balb.idr	Intergenic	B3A|SINE|B2	-5136.0	NM_007577	12273.0	Mm.247623	NM_007577	ENSMUSG00000049130	C5ar1	C5aR|C5r1|Cd88|D7Msu1	complement component 5a receptor 1	protein-coding	3.1342372164848	3.33366466473091	3.31439073063355	2.79511291499897	2.39097930129023	4.25308419014293	3.91512568007277	3.14312940149271	0.695840169960895	0.271653106248433	0.775081570630341
Merged-chr19-55923080-2	chr19	55922980	55923180	+	564.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001142920, intron 11 of 11)	Tigger5|DNA|TcMar-Tigger	27759.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-167649515-4	chr2	167649480	167649680	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145538, intron 2 of 5)	intron (NM_145538, intron 2 of 5)	11964.0	NM_145538	407243.0	Mm.4863	NM_145538	ENSMUSG00000090213	Tmem189	AI840826|Kua	transmembrane protein 189	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-11195228-1	chr18	11195128	11195328	+	656.0	f0_balb.idr	Intergenic	Intergenic	-142661.0	NR_105022	68434.0	Mm.57626	NR_105022	ENSMUSG00000097222	1010001N08Rik	Gata6as	RIKEN cDNA 1010001N08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-29080892-2	chr17	29080792	29080992	+	841.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1766.0	NR_036469	100504267.0	Mm.438550	NR_036469	ENSMUSG00000085912	Trp53cor1	Gm16197|linc-p21|lincRNA-p21	tumor protein p53 pathway corepressor 1	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-4344498-3	chr18	4344383	4344583	+	754.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007746, intron 2 of 7)	intron (NM_007746, intron 2 of 7)	8470.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-92381933-4	chr5	92381835	92382035	+	898.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310664, intron 2 of 10)	intron (NM_001310664, intron 2 of 10)	-6199.0	NM_181728	109979.0	Mm.263514	NM_181728	ENSMUSG00000034842	Art3	4930569O04Rik|ARTC3	ADP-ribosyltransferase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-92905777-2	chr1	92905677	92905877	+	930.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1212.0	NM_175118	67446.0	Mm.46179	NM_175118	ENSMUSG00000047067	Dusp28	0710001B24Rik|AV005521	dual specificity phosphatase 28	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-65374988-3	chr14	65374893	65375093	+	999.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199029, intron 1 of 9)	intron (NM_199029, intron 1 of 9)	16317.0	NM_199029	380912.0	Mm.270087	NM_199029	ENSMUSG00000034522	Zfp395	BC053701|Gm910	zinc finger protein 395	protein-coding	0.772323776608747	1.46807277807576	0.59138497856037	0.575117734036662	1.84715268191902	2.29883523698115	0.595939889677754	0.57799822271073	2.08789664423224	0.175041458880624	0.644085286337065
Merged-chr8-66391780-4	chr8	66391714	66391914	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175188, intron 5 of 7)	intron (NM_175188, intron 5 of 7)	5513.0	NM_001166375	72925.0	Mm.380457	NM_175188	ENSMUSG00000036469	March1	2900024D24Rik|BB085186	membrane-associated ring finger (C3HC4) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-46770481-4	chr18	46770384	46770584	+	946.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009681, intron 3 of 5)	intron (NM_009681, intron 3 of 5)	28608.0	NM_009681	11777.0	Mm.312536	NM_009681	ENSMUSG00000024480	Ap3s1	-	adaptor-related protein complex 3, sigma 1 subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-120749902-4	chr5	120749801	120750001	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145227)	promoter-TSS (NM_145227)	-53.0	NM_001347448	246728.0	Mm.260926	NM_145227	ENSMUSG00000032690	Oas2	Oasl11	2'-5' oligoadenylate synthetase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-31572518-4	chr15	31572434	31572634	+	950.6083369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181588, intron 1 of 5)	MTD|LTR|ERVL-MaLR	3701.0	NM_181588	69574.0	Mm.28108	NM_181588	ENSMUSG00000022235	Cmbl	2310016A09Rik	carboxymethylenebutenolidase-like (Pseudomonas)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-45491521-3	chr7	45491395	45491595	+	770.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290999, intron 1 of 9)	intron (NM_001290999, intron 1 of 9)	-2690.0	NM_027903	71755.0	Mm.34208	NM_027903	ENSMUSG00000011382	Dhdh	1300018L09Rik|AA591799|B830008H07Rik|Xld-1|Xld1	dihydrodiol dehydrogenase (dimeric)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-75829646-4	chr14	75829604	75829804	+	926.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15260.0	NR_045294	100043189.0	Mm.426329	NR_045294		Gm4285	-	predicted gene 4285	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71213975-2	chr17	71213875	71214075	+	811.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164885, intron 1 of 19)	intron (NM_001164885, intron 1 of 19)	9321.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-102108082-2	chr15	102107982	102108182	+	936.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355636, intron 10 of 28)	intron (NM_001355636, intron 10 of 28)	5148.0	NM_153533	209039.0	Mm.29389	NM_153533	ENSMUSG00000037003	Tns2	C1-ten|Tenc1|nep|nph	tensin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-88064146-4	chr17	88064039	88064239	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081034, intron 1 of 22)	intron (NM_001081034, intron 1 of 22)	793.0	NM_001348248	225055.0	Mm.386857	NM_001081034	ENSMUSG00000005371	Fbxo11	C80048|Jf	F-box protein 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-18639158-3	chr19	18639053	18639253	+	850.755554	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145497, intron 2 of 8)	intron (NM_145497, intron 2 of 8)	7137.0	NM_145497	225994.0	Mm.211595	NM_145497	ENSMUSG00000037847	Nmrk1	AA408380|D630020N23Rik|Nrk1	nicotinamide riboside kinase 1	protein-coding	2.33974986432169	2.74783956489203	1.81875603035849	1.55235013330439	2.45700153019562	3.38619646257325	2.45503388878556	1.56017418838683	0.886796895815277	0.329445679771281	0.831942889324137
Merged-chr12-102297199-4	chr12	102297106	102297306	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161365, intron 1 of 9)	RLTR11A2|LTR|ERVK	13565.0	NM_001161365	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-54811799-4	chr6	54811692	54811892	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5124.0	NM_199143	387524.0	Mm.286149	NM_199143	ENSMUSG00000058446	Znrf2	1190002C14Rik|AU044205|D6Ertd365e	zinc and ring finger 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-131274114-2	chr1	131274014	131274214	+	740.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019777, intron 5 of 21)	B3|SINE|B2	5449.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-155244390-2	chr1	155244290	155244490	+	581.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	85687.0	NM_021433	58244.0	Mm.66264	NM_021433	ENSMUSG00000026470	Stx6	2310039E05Rik|2410005I16Rik|AA437559|AI415714|AI845861	syntaxin 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-120347963-3	chr11	120347871	120348071	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_105900)	promoter-TSS (NR_105900)	524.0	NM_001313923	11465.0	Mm.196173	NM_009609	ENSMUSG00000062825	Actg1	AL023024|Actg|Actl|E51	actin, gamma, cytoplasmic 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-79756482-2	chr7	79756382	79756582	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037927, intron 5 of 17)	intron (NM_001037927, intron 5 of 17)	13319.0	NM_001037927	626359.0	Mm.387216	NM_001037927	ENSMUSG00000039099	Wdr93	EG626359	WD repeat domain 93	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-23803042-4	chr17	23802932	23803132	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175229)	promoter-TSS (NM_175229)	-155.0	NM_175229	75956.0	Mm.5222	NM_175229	ENSMUSG00000039218	Srrm2	5033413A03Rik|AA410130|SRm300|mKIAA0324	serine/arginine repetitive matrix 2	protein-coding	7.99064288080689	7.4102478478305	7.65145219345408	7.43523615659151	8.03989942567257	7.36164529023254	7.86758529789874	7.00901386433296	-0.0155997603276233	0.939473111543576	0.998431161219273
Merged-chr2-120578494-4	chr2	120578393	120578593	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009222, intron 1 of 7)	intron (NM_009222, intron 1 of 7)	10822.0	NM_009222	20619.0	Mm.245715	NM_009222	ENSMUSG00000027287	Snap23	23kDa|AA408749|SNAP-23|Sndt|Syndet	synaptosomal-associated protein 23	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-77386793-4	chr5	77386575	77386775	+	890.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008048, intron 1 of 4)	intron (NM_008048, intron 1 of 4)	21370.0	NM_001159518	29817.0	Mm.233470	NM_008048	ENSMUSG00000036256	Igfbp7	AGM|Fstl2|Mac25	insulin-like growth factor binding protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-165234764-4	chr2	165234665	165234865	+	907.0458369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_174988)	promoter-TSS (NM_174988)	-28.0	NM_174988	104010.0	Mm.151819	NM_174988	ENSMUSG00000053166	Cdh22	-	cadherin 22	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-27207468-2	chr3	27207368	27207568	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 1 of 4)	intron (NM_178772, intron 1 of 4)	24464.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-88578979-2	chr5	88578879	88579079	+	746.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289774, intron 1 of 17)	MTB|LTR|ERVL-MaLR	-4534.0	NM_001359208	52822.0	Mm.270469	NM_027530	ENSMUSG00000029291	Rufy3	2810428M05Rik|6330416M07Rik|AW455998|AW538594|D5Bwg0860e|Ripx|Rpipx	RUN and FYVE domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-75192946-4	chr14	75192839	75193039	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008879, intron 2 of 16)	intron (NM_008879, intron 2 of 16)	-49348.0	NM_019775	56373.0	Mm.24242	NM_019775	ENSMUSG00000021999	Cpb2	1110032P04Rik|4930405E17Rik|AI255929|CPR|Cpu|TAFI	carboxypeptidase B2 (plasma)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-122802736-2	chr10	122802636	122802836	+	755.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110218, intron 3 of 9)	intron (NM_001110218, intron 3 of 9)	123421.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-122636423-2	chr6	122636323	122636523	+	807.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9999.0	NM_139218	73708.0	Mm.27982	NM_139218	ENSMUSG00000046323	Dppa3	2410075G02Rik|PCG7|PGC7|Stella	developmental pluripotency-associated 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-9386018-2	chr1	9385920	9386120	+	554.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus1|LINE|L1	-86143.0	NM_001290392	71096.0	Mm.336395	NM_027671	ENSMUSG00000025909	Sntg1	4933426D16Rik|G1SYN|SYN4	syntrophin, gamma 1	protein-coding	-0.716570193766577	-0.707816224428976	-0.710701559999452	-0.712916179524062	-0.461203985425837	-0.365906328443262	-0.39657620988065	-0.71253001852428	3.10120996921629	0.251920933067707	1
Merged-chr12-82260367-4	chr12	82260267	82260467	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167983, intron 2 of 23)	intron (NM_001167983, intron 2 of 23)	-50982.0	NM_172579	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-92265922-4	chr9	92265784	92265984	+	856.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011636, intron 5 of 8)	intron (NM_011636, intron 5 of 8)	1477.0	NR_105808	102465203.0		NR_105808	ENSMUSG00000098766	Mir6386	Gm27842|mmu-mir-6386	microRNA 6386	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-116024535-4	chr5	116024479	116024679	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031869)	promoter-TSS (NM_031869)	-151.0	NM_031869	19079.0	Mm.458152	NM_031869	ENSMUSG00000029513	Prkab1	1300015D22Rik|AU021155|E430008F22	protein kinase, AMP-activated, beta 1 non-catalytic subunit	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-32551527-2	chr4	32551427	32551627	+	609.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001109661, intron 2 of 4)	B3|SINE|B2	20135.0	NR_026843	414068.0	Mm.389550	NR_026843	ENSMUSG00000086150	Bach2os	-	BTB and CNC homology 2, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-96751092-1	chr10	96750992	96751192	+	748.0	f0_balb.idr	Intergenic	Intergenic	134091.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-91712292-2	chr6	91712192	91712392	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009320, intron 2 of 14)	intron (NM_009320, intron 2 of 14)	28225.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-7272424-4	chr9	7272327	7272527	+	982.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008607)	promoter-TSS (NM_008607)	-87.0	NM_008607	17386.0	Mm.5022	NM_008607	ENSMUSG00000050578	Mmp13	Clg|MMP-13|Mmp1	matrix metallopeptidase 13	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-140778358-4	chr2	140778270	140778470	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013802, intron 3 of 18)	intron (NM_001013802, intron 3 of 18)	-106894.0	NM_178382	71436.0	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-129403098-3	chr2	129402990	129403190	+	816.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31951.0	NM_008361	16176.0	Mm.222830	NM_008361	ENSMUSG00000027398	Il1b	IL-1beta|Il-1b	interleukin 1 beta	protein-coding	0.890452250977705	1.72206300510349	1.99138484817701	0.917274882915468	1.83363890854824	1.58761319374017	2.00916551879046	0.920030899173055	0.510494410020703	0.701496343001253	0.998431161219273
Merged-chr11-96975018-4	chr11	96974915	96975115	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030220, intron 1 of 6)	intron (NM_030220, intron 1 of 6)	2673.0	NM_030220	78912.0	Mm.491183	NM_030220	ENSMUSG00000018678	Sp2	4930480I16Rik|mKIAA0048	Sp2 transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-61438552-3	chr14	61438451	61438651	+	690.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008466, intron 1 of 16)	intron (NM_008466, intron 1 of 16)	1396.0	NM_008466	16648.0	Mm.25548	NM_008466	ENSMUSG00000021929	Kpna3	IPOA4	karyopherin (importin) alpha 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-80319200-3	chr8	80319067	80319267	+	854.805542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-174878.0	NM_010369	14934.0	Mm.13123	NM_010369	ENSMUSG00000051839	Gypa	AI853584|CD235a|GPA	glycophorin A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-24376797-4	chr9	24376696	24376896	+	770.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	126344.0	NM_001359948	244745.0	Mm.38526	NM_172920	ENSMUSG00000043067	Dpy19l1	1100001I19Rik|6030402K12|AI225861|AW558481	dpy-19-like 1 (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-60124230-2	chr10	60124130	60124330	+	702.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_052994, intron 5 of 10)	intron (NM_052994, intron 5 of 10)	-2546.0	NR_105871	102465546.0		NR_105871	ENSMUSG00000105468	Mir6906	mmu-mir-6906	microRNA 6906	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-87552585-4	chr6	87552496	87552696	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19337.0	NM_001286610	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-70792656-4	chr11	70792575	70792775	+	837.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045526, intron 4 of 4)	MLT1A1|LTR|ERVL-MaLR	19886.0	NM_001045526	327957.0	Mm.164325	NM_001045526	ENSMUSG00000057135	Scimp	A430084P05Rik	SLP adaptor and CSK interacting membrane protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-94707835-4	chr11	94707746	94707946	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-3347.0	NM_001007584	432589.0	Mm.342314	NM_001007584	ENSMUSG00000056008	Gm11541	-	predicted gene 11541	protein-coding	2.9428338555975	3.54234316777979	1.91175359467938	3.58662896627412	2.88097233566588	3.12888499297536	3.21525427216341	2.70979708058282	-0.268975262214717	0.697435932428913	0.998073021396089
Merged-chr1-144309481-3	chr1	144309381	144309581	+	872.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1|SINE|Alu	-60377.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27035495-4	chr17	27035326	27035526	+	753.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_027544, intron 5 of 5)	intron (NM_027544, intron 5 of 5)	6167.0	NM_027544	70772.0	Mm.440437	NM_027544	ENSMUSG00000048731	Ggnbp1	0610031G08Rik|mdf	gametogenetin binding protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-59697621-2	chr13	59697521	59697721	+	563.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3520.0	NM_183290	70900.0	Mm.73124	NM_183290	ENSMUSG00000049902	4921517D22Rik	-	RIKEN cDNA 4921517D22 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-16773754-2	chr19	16773654	16773854	+	720.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173028, intron 1 of 71)	intron (NM_173028, intron 1 of 71)	7179.0	NM_173028	271564.0	Mm.211963	NM_173028	ENSMUSG00000046230	Vps13a	4930425F11|4930516E05Rik|4930543C13Rik|9930023P20|Chac|Chorein|D330038K10Rik|mKIAA0986	vacuolar protein sorting 13A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-41024836-3	chr8	41024738	41024938	+	833.472229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_015457)	TTS (NR_015457)	7370.0	NR_015457	78849.0	Mm.440930	NR_015457	ENSMUSG00000084960	B430010I23Rik	-	RIKEN cDNA B430010I23 gene	ncRNA	2.51519548107681	2.60572714809755	3.06281728752499	2.97791226189344	2.44148739903622	2.62517930119126	1.92989729320174	1.4095620341874	-1.31176452061237	0.115338426751933	0.532106041080373
Merged-chr17-34932491-2	chr17	34932391	34932591	+	599.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010893, intron 2 of 5)	intron (NM_010893, intron 2 of 5)	1238.0	NM_010893	18010.0	Mm.8856	NM_010893	ENSMUSG00000007038	Neu1	AA407268|AA407316|Aglp|Apl|Bat-7|Bat7|G9|Map-2|Neu|Neu-1	neuraminidase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-13867631-4	chr17	13867517	13867717	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151731, intron 22 of 33)	intron (NR_151731, intron 22 of 33)	-80756.0	NM_001122977	635895.0	Mm.388844	NM_001122977	ENSMUSG00000067941	Gm7168	EG635895	predicted gene 7168	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-91617397-4	chr6	91617280	91617480	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J2|LTR|ERVL-MaLR	-66687.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-87415940-4	chr14	87415841	87416041	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172605)	promoter-TSS (NM_172605)	-642.0	NM_172605	219249.0	Mm.35168	NM_172605	ENSMUSG00000022019	Tdrd3	4732418C03Rik|6720468N18	tudor domain containing 3	protein-coding	5.58680623364926	5.41745214852474	6.07155662063938	4.57124014847895	5.3216793247321	4.48359111157615	5.73867444739253	4.94014672492355	-0.355154730402615	0.332726355844396	0.833345452772687
Merged-chr19-46669202-2	chr19	46669102	46669302	+	647.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_007809, exon 5 of 8)	exon (NM_007809, exon 5 of 8)	3798.0	NM_007809	13074.0	Mm.1262	NM_007809	ENSMUSG00000003555	Cyp17a1	Cyp17|p450c17	cytochrome P450, family 17, subfamily a, polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-25726478-2	chr14	25726378	25726578	+	706.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001101433, intron 2 of 3)	intron (NM_001101433, intron 2 of 3)	-25196.0	NR_028021	68173.0	Mm.444727	NM_026595		Ppifos	4930520F12Rik|Ppifs	peptidylprolyl isomerase F, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-77944608-2	chr2	77944508	77944708	+	999.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030560, intron 1 of 20)	RLTR28|LTR|ERVL	1748.0	NM_001290740	80744.0	Mm.288151	NM_030560	ENSMUSG00000027014	Cwc22	AA684037|AI173004|AL022752|B230213M24|mKIAA1604	CWC22 spliceosome-associated protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-20028350-3	chr3	20028285	20028485	+	784.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080634, intron 4 of 16)	ID_B1|SINE|B4	6925.0	NM_001146324	12807.0	Mm.291533	NM_080634	ENSMUSG00000027615	Hps3	coa	HPS3, biogenesis of lysosomal organelles complex 2 subunit 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-87404059-2	chr18	87403959	87404159	+	769.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	691748.0	NM_001361145	12405.0	Mm.70775	NM_172633	ENSMUSG00000024647	Cbln2	6330593N19Rik|A730004O05	cerebellin 2 precursor protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-49148085-2	chr13	49147985	49148185	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_029361, exon 1 of 28)	5' UTR (NM_029361, exon 1 of 28)	243.0	NM_029361	75607.0	Mm.342723	NM_029361	ENSMUSG00000037989	Wnk2	1810073P09Rik|AW122246|ESTM15|X83337|mKIAA1760	WNK lysine deficient protein kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-99165288-1	chr7	99165188	99165388	+	934.0	f1_c57bl6.idr	intron (NM_026384, intron 2 of 7)	intron (NM_026384, intron 2 of 7)	17425.0	NM_026384	67800.0	Mm.180189	NM_026384	ENSMUSG00000030747	Dgat2	0610010B06Rik|ARAT|DGAT-2	diacylglycerol O-acyltransferase 2	protein-coding	0.510279746207761	-0.228398536993978	-0.233732472111339	-0.237863439522099	-0.243725281298979	-0.227199277828111	0.486511740829607	-0.23714076241396	-0.0668539012664346	0.979005852318122	1
Merged-chr9-46175554-2	chr9	46175454	46175654	+	565.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027498, intron 4 of 24)	ORR1B2|LTR|ERVL-MaLR	-53076.0	NM_009692	11806.0	Mm.26743	NM_009692	ENSMUSG00000032083	Apoa1	Alp-1|Apoa-1|Brp-14|Ltw-1|Lvtw-1|Sep-1|Sep-2|Sep2|apo-AI|apoA-I	apolipoprotein A-I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-10923775-3	chr8	10923661	10923861	+	795.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_030715)	TTS (NR_030715)	4696.0	NR_030715	665306.0	Mm.358758	NR_030715	ENSMUSG00000038917	3930402G23Rik	-	RIKEN cDNA 3930402G23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-84113192-2	chr17	84113092	84113292	+	547.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER20|DNA|hAT-Charlie	34532.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-63300105-2	chr10	63300005	63300205	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359484, intron 14 of 22)	intron (NM_001359484, intron 14 of 22)	38930.0	NM_019812	93759.0	Mm.351459	NM_019812	ENSMUSG00000020063	Sirt1	AA673258|SIR2L1|Sir2|Sir2a|Sir2alpha	sirtuin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-57970354-4	chr15	57970255	57970455	+	981.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001081396)	TTS (NM_001081396)	-15548.0	NM_173862	239463.0	Mm.221241	NM_173862	ENSMUSG00000051225	Fam83a	-	family with sequence similarity 83, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-9977962-4	chr19	9977861	9978061	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2639.0	NR_073181	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-88696881-4	chr8	88696759	88696959	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173369)	promoter-TSS (NM_173369)	-169.0	NM_001128170	74256.0	Mm.490395	NM_173369	ENSMUSG00000036712	Cyld	2010013M14Rik|2900009M21Rik|C130039D01Rik|CDMT|CYLD1|EAC|mKIAA0849	CYLD lysine 63 deubiquitinase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-71309765-5	chr12	71309658	71309858	+	823.299988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021532)	promoter-TSS (NM_021532)	-126.0	NM_021532	59036.0	Mm.46662	NM_021532	ENSMUSG00000044548	Dact1	4921528D17Rik|AI115603|DAPPER|DAPPER1|FRODO|Frd1|Frodo1|MDpr1|MTNG3|THYEX3	dishevelled-binding antagonist of beta-catenin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-87722505-4	chr10	87722401	87722601	+	922.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-135764.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-4457895-4	chr2	4457792	4457992	+	986.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 2 of 23)	intron (NM_001177843, intron 2 of 23)	56916.0	NM_001177843	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-24394615-2	chr16	24394515	24394715	+	814.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_037954)	promoter-TSS (NR_037954)	-960.0	NR_037954	68841.0	Mm.361995	NR_037954		Lppos	1110054M08Rik|AI481106	LIM domain containing preferred translocation partner in lipoma, opposite strand	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-38918928-4	chr6	38918819	38919019	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011539)	promoter-TSS (NM_011539)	-67.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-37479272-4	chr1	37479170	37479370	+	935.94165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173870, intron 5 of 15)	L1M4|LINE|L1	9335.0	NR_024017	77633.0	Mm.483177	NR_024017	ENSMUSG00000103948	4930594C11Rik	-	G1 to S phase transition pseudogene	pseudo	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-92844798-4	chr13	92844659	92844859	+	994.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162945)	promoter-TSS (NM_001162945)	-28.0	NM_001162945	382793.0	Mm.296770	NM_001162945	ENSMUSG00000021704	Mtx3	4930470O13Rik|AA409304|AI853833|AU067765|EG624619|Gm1194|Gm6514	metaxin 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-121044350-2	chr14	121044250	121044450	+	565.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134082, intron 1 of 26)	MTE2b|LTR|ERVL-MaLR	8776.0	NM_134082	223254.0	Mm.223980	NM_134082	ENSMUSG00000025555	Farp1	AW228844|BC030329|Cdep	FERM, RhoGEF (Arhgef) and pleckstrin domain protein 1 (chondrocyte-derived)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-102311290-2	chr11	102311190	102311390	+	826.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011551, intron 7 of 20)	intron (NM_011551, intron 7 of 20)	5997.0	NM_001044383	21429.0	Mm.2845	NM_011551	ENSMUSG00000020923	Ubtf	A930005G04Rik|NOR-90|Tcfubf|UBF|UBF-1|UBF1	upstream binding transcription factor, RNA polymerase I	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-83182745-2	chr10	83182645	83182845	+	662.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021439, intron 2 of 2)	intron (NM_021439, intron 2 of 2)	155072.0	NM_177388	338365.0	Mm.67073	NM_177388	ENSMUSG00000034591	Slc41a2	A230035L05Rik|SLC41A1-L1	solute carrier family 41, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-91366401-4	chr1	91366334	91366534	+	921.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173395)	promoter-TSS (NM_173395)	4.0	NM_173395	227358.0	Mm.389157	NM_173395	ENSMUSG00000047443	Erfe	4832406C22|Fam132b|myonectin	erythroferrone	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19341118-2	chr7	19341018	19341218	+	579.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D11|SINE|Alu	-3953.0	NM_001127324	13870.0	Mm.280913	NM_007948	ENSMUSG00000003549	Ercc1	Ercc-1	excision repair cross-complementing rodent repair deficiency, complementation group 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-50470042-4	chr17	50469946	50470146	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39501.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-62458457-4	chr11	62458335	62458535	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039536)	promoter-TSS (NM_001039536)	-25.0	NM_001039536	327942.0	Mm.390358	NM_199026	ENSMUSG00000014245	Pigl	Gm737	phosphatidylinositol glycan anchor biosynthesis, class L	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-109254743-2	chr3	109254643	109254843	+	850.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-85940.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-60629102-3	chr15	60628991	60629191	+	627.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-193874.0	NR_030696	320469.0	Mm.230853	NM_177166		9930014A18Rik	-	RIKEN cDNA 9930014A18 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-62190191-4	chr10	62190082	62190282	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197996, intron 5 of 7)	intron (NM_197996, intron 5 of 7)	4045.0	NR_106122	102465767.0		NR_106122	ENSMUSG00000099185	Mir7662	Gm27876|mmu-mir-7662	microRNA 7662	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-72238817-2	chr7	72238717	72238917	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001024703, intron 4 of 22)	intron (NM_001024703, intron 4 of 22)	67778.0	NM_001024703	244049.0	Mm.217412	NM_001024703	ENSMUSG00000032776	Mctp2	Gm489	multiple C2 domains, transmembrane 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-3793336-3	chr4	3793219	3793419	+	717.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	42336.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-36231085-4	chr1	36230976	36231176	+	920.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198899, intron 2 of 40)	intron (NM_198899, intron 2 of 40)	13226.0	NM_198899	320011.0	Mm.261022	NM_198899	ENSMUSG00000037470	Uggt1	0910001L17Rik|A930007H10Rik|AA589501|AI414429|AI448372|C820010P03Rik|GT|UGT1|Ugcgl1	UDP-glucose glycoprotein glucosyltransferase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-66998397-2	chr6	66998297	66998497	+	584.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177560, intron 3 of 4)	intron (NM_001177560, intron 3 of 4)	-38202.0	NR_040278	320172.0	Mm.449039	NR_040278	ENSMUSG00000087231	E230016M11Rik	-	RIKEN cDNA E230016M11 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-112753535-4	chr13	112753439	112753639	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47238.0	NM_008903	19012.0	Mm.291029	NM_008247	ENSMUSG00000021759	Plpp1	Hic53|Hpic53|LPP-1|LPP1|PAP-2a|PAP2-alpha|PAP2a|Ppap2a|mPAP	phospholipid phosphatase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-19938522-1	chr10	19938422	19938622	+	706.0	f0_balb.idr	intron (NM_008580, intron 1 of 29)	intron (NM_008580, intron 1 of 29)	3996.0	NM_008580	26408.0	Mm.6595	NM_008580	ENSMUSG00000071369	Map3k5	7420452D20Rik|ASK|ASK1|MAPKKK5|Mekk5	mitogen-activated protein kinase kinase kinase 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-58531461-4	chr18	58531372	58531572	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24768.0	NM_001081072	225579.0	Mm.258517	NM_001081072	ENSMUSG00000024600	Slc27a6	4732438L20Rik|FACVL2|FATP6|VLCS-H1	solute carrier family 27 (fatty acid transporter), member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-44558213-2	chr16	44558113	44558313	+	881.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_037242)	promoter-TSS (NR_037242)	-84.0	NR_037242	100526478.0		NR_037242	ENSMUSG00000093046	Mir3081	mir-3081|mmu-mir-3081	microRNA 3081	ncRNA	-0.348770917087869	-0.977870260089896	-0.989819320508362	-0.991994201976819	-0.84630853562483	-0.975263707176863	-0.987175509973415	-0.991614408081669	-1.97168503206029	0.529110519935892	1
Merged-chr1-171074471-2	chr1	171074371	171074571	+	806.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9819.0	NR_106103	102466998.0		NR_106103	ENSMUSG00000099119	Mir6546	Gm27408|mmu-mir-6546	microRNA 6546	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-58564614-3	chr18	58564502	58564702	+	779.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081072, intron 1 of 9)	intron (NM_001081072, intron 1 of 9)	8362.0	NM_001081072	225579.0	Mm.258517	NM_001081072	ENSMUSG00000024600	Slc27a6	4732438L20Rik|FACVL2|FATP6|VLCS-H1	solute carrier family 27 (fatty acid transporter), member 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-35661177-2	chr11	35661077	35661277	+	689.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011412, intron 24 of 35)	intron (NM_011412, intron 24 of 35)	44361.0	NR_029799	723924.0		NR_029799	ENSMUSG00000065583	Mir218-2	Mirn218-2|mir-218-2	microRNA 218-2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-57773109-2	chr6	57773009	57773209	+	644.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146168, intron 3 of 4)	intron (NM_146168, intron 3 of 4)	52016.0	NM_146168	232023.0	Mm.24642	NM_146168	ENSMUSG00000037788	Vopp1	AW146242|Ecop	vesicular, overexpressed in cancer, prosurvival protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-87840199-3	chr10	87840108	87840308	+	851.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18057.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-52958634-4	chr2	52958524	52958724	+	836.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	100756.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-164726140-2	chr2	164726040	164726240	+	885.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10835.0	NM_001040055	641368.0	Mm.422380	NM_001040055	ENSMUSG00000074593	Spint5	Gm14316	serine protease inhibitor, Kunitz type 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-51452324-2	chr10	51452220	51452420	+	977.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1VL1|LINE|L1	-28292.0	NM_008147	14727.0	Mm.439661	NM_008147	ENSMUSG00000112023	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-87419095-2	chr14	87418995	87419195	+	788.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253755, intron 1 of 11)	intron (NM_001253755, intron 1 of 11)	2512.0	NM_001253755	219249.0	Mm.35168	NM_172605	ENSMUSG00000022019	Tdrd3	4732418C03Rik|6720468N18	tudor domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-118975583-2	chr11	118975483	118975683	+	696.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12598.0	NM_001359574	238011.0	Mm.244114	NM_001030291	ENSMUSG00000046697	Enpp7	Alk-SMase|Gm254	ectonucleotide pyrophosphatase/phosphodiesterase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-84012594-4	chr8	84012497	84012697	+	858.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291292)	promoter-TSS (NM_001291292)	-877.0	NM_001291292	70134.0	Mm.41017	NM_001291292	ENSMUSG00000074217	2210011C24Rik	-	RIKEN cDNA 2210011C24 gene	protein-coding	1.02677151083666	1.69812272376425	1.39880306113634	1.22351484362672	1.41107283629588	1.46045016660289	1.53644104413453	0.880820960325827	-0.0484601228459304	0.969183582256773	0.998431161219273
Merged-chr2-91949506-2	chr2	91949368	91949568	+	821.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166597, intron 1 of 31)	intron (NM_001166597, intron 1 of 31)	880.0	NM_001166597	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	1.86819803552195	2.10999592719407	2.1335711450685	1.6179760011144	1.54999781265658	1.1142636180513	1.09302173739769	2.08105104585179	-1.21670290627762	0.284814291299846	0.78894917662357
Merged-chr2-25367219-2	chr2	25367119	25367319	+	561.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-1556.0	NM_001033293	227620.0	Mm.33797	NM_001033293	ENSMUSG00000026956	Uap1l1	5730445F03Rik	UDP-N-acteylglucosamine pyrophosphorylase 1-like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-26428519-1	chr6	26428419	26428619	+	563.0	f0_balb.idr	Intergenic	L1_Mur3|LINE|L1	497093.0	NR_040771	626904.0	Mm.126787	NR_040771	ENSMUSG00000106799	Gm20756	-	predicted gene, 20756	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-50949899-2	chr9	50949799	50949999	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178710, intron 3 of 15)	intron (NM_178710, intron 3 of 15)	59174.0	NM_178710	235344.0	Mm.104932	NM_178710	ENSMUSG00000037112	Sik2	G630080D20Rik|Snf1lk2	salt inducible kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-123360727-3	chr8	123360599	123360799	+	868.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172287, intron 9 of 14)	intron (NM_172287, intron 9 of 14)	-13012.0	NM_001359076	66855.0	Mm.178818	NM_025804	ENSMUSG00000001472	Tcf25	1100001J13Rik|1810041K11Rik|D8Ertd325e|Nulp1|mKIAA1049	transcription factor 25 (basic helix-loop-helix)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-35108316-4	chr2	35108212	35108412	+	916.741699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1180.0	NM_012018	26920.0	Mm.231332	NM_012018	ENSMUSG00000057110	Cntrl	6720467O09Rik|AA968343|Cep1|Cep110|IB3/5|Ma2a8|b2b1468.1Clo|b2b1468Clo	centriolin	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-51843495-2	chr13	51843395	51843595	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR25A|LTR|ERVK	-3180.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-104991416-2	chr3	104991316	104991516	+	834.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29707.0	NM_009520	22414.0	Mm.10740	NM_009520	ENSMUSG00000027840	Wnt2b	Wnt13	wingless-type MMTV integration site family, member 2B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-107242812-3	chr11	107242711	107242911	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 6 of 9)	intron (NR_153311, intron 6 of 9)	-53430.0	NM_001161329	68979.0	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-151828073-2	chr4	151827973	151828173	+	688.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001195565, intron 3 of 3)	intron (NM_001195565, intron 3 of 3)	33695.0	NM_001081557	100072.0	Mm.318846	NM_001081557	ENSMUSG00000014592	Camta1	1810059M14Rik|2310058O09Rik|AI316882|AW987475|mKIAA0833	calmodulin binding transcription activator 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-68187502-1	chr8	68187402	68187602	+	624.0	f0_balb.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-89026.0	NM_028182	72281.0	Mm.40974	NM_028182	ENSMUSG00000053886	Sh2d4a	2210402M20Rik|SH2A	SH2 domain containing 4A	protein-coding	1.46234098117279	0.978001877368882	0.739124395879383	0.72867588051835	1.47697489852022	1.58973533197756	1.52547954882758	0.730511955826564	1.41465154250359	0.338649371756055	0.8390243314281
Merged-chr15-50890078-4	chr15	50889994	50890194	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_035444)	promoter-TSS (NR_035444)	-53.0	NM_032000	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-46601301-7	chr4	46601052	46601252	+	930.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164804, intron 1 of 11)	intron (NM_001164804, intron 1 of 11)	777.0	NM_001164804	107684.0	Mm.416311	NM_178893	ENSMUSG00000028337	Coro2a	9030208C03Rik|AI563590|IR10	coronin, actin binding protein 2A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-99311033-2	chr11	99310956	99311156	+	779.416687	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	11885.0	NM_133730	70810.0	Mm.268173	NM_133730	ENSMUSG00000035831	Krt25	4631426H08Rik|Ka38|Krt25a|mIRSa1	keratin 25	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-22872037-4	chr11	22871929	22872129	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11693.0	NM_001169114	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-57806032-1	chr18	57805932	57806132	+	622.0	f0_balb.idr	Intergenic	Intergenic	-13699.0	NR_152225	100503033.0	Mm.381112	NR_152224		Gm19519	-	predicted gene, 19519	ncRNA	1.77077594407374	1.34385318322599	1.49873016754164	1.0507256934193	1.7862557162398	2.50910992679623	1.51002888638182	2.08938266346841	1.75337251495253	0.110646961455988	0.520877155459957
Merged-chr1-180698270-3	chr1	180698159	180698359	+	955.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-1225.0	NM_013729	27217.0	Mm.103647	NM_013729	ENSMUSG00000026497	Mixl1	Mm1|Mml	Mix1 homeobox-like 1 (Xenopus laevis)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-45311639-3	chr13	45311473	45311673	+	769.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-78169.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	-0.344494656438223	-0.780038440997145	-0.615922000196447	-0.784911258048954	-0.5327019199939	-0.778922502289314	-0.782188459774133	-0.7845422529064	-1.19274287863104	0.675741923703955	1
Merged-chr8-83901305-2	chr8	83901205	83901405	+	905.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_181039, intron 1 of 22)	intron (NM_181039, intron 1 of 22)	1207.0	NM_181039	330814.0	Mm.260733	NM_181039	ENSMUSG00000013033	Adgrl1	2900070I05Rik|AI182398|CLIBA|Lec2|Lphn1|mKIAA0821	adhesion G protein-coupled receptor L1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-80684408-4	chr10	80684313	80684513	+	868.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_172457)	TTS (NM_172457)	-8120.0	NM_021462	17347.0	Mm.42126	NM_021462	ENSMUSG00000020190	Mknk2	2010016G11Rik|Gprk7|Mnk2	MAP kinase-interacting serine/threonine kinase 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-32762125-3	chr19	32761997	32762197	+	759.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008960, intron 1 of 8)	(T)n|Simple_repeat|Simple_repeat	4520.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-177065898-2	chr1	177065798	177065998	+	677.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011785, intron 8 of 12)	intron (NM_011785, intron 8 of 12)	182869.0	NM_011785	23797.0	Mm.235194	NM_011785	ENSMUSG00000019699	Akt3	AI851531|D930002M15Rik|Nmf350	thymoma viral proto-oncogene 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-30465017-4	chr16	30464944	30465144	+	956.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16_Mm|LTR|ERVK	-76514.0	NM_001128096	224088.0	Mm.8924	NM_001128094	ENSMUSG00000022533	Atp13a3	AU022875|Gm1745|Gm541|Gm542	ATPase type 13A3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-53342321-2	chr15	53342221	53342421	+	711.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	3862.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-120711668-3	chr5	120711548	120711748	+	859.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008052)	promoter-TSS (NM_008052)	21.0	NM_008052	14357.0	Mm.1645	NM_008052	ENSMUSG00000029603	Dtx1	Fxit1|mKIAA4160	deltex 1, E3 ubiquitin ligase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-51341846-2	chr3	51341756	51341956	+	901.666626	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-1212.0	NM_023502	69257.0	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-85285985-1	chr1	85285885	85286085	+	805.0	f1_balb.idr	Intergenic	B3|SINE|B2	-15419.0	NM_001037909	620078.0	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik	RIKEN cDNA C130026I21 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-16919479-1	chr7	16919379	16919579	+	702.0	f1_c57bl6.idr	intron (NM_007590, intron 2 of 5)	intron (NM_007590, intron 2 of 5)	4553.0	NM_007590	12315.0	Mm.288630	NM_007590	ENSMUSG00000019370	Calm3	CaMA|Cam3|Camc|R75142	calmodulin 3	protein-coding	-0.649061343600464	0.387951657061156	-0.43074061621144	-0.642660812372131	-0.648103902923925	-0.632844075724304	-0.637759623074159	-0.641992082930154	-3.64523962243147	0.170840401941693	1
Merged-chr19-53947532-2	chr19	53947432	53947632	+	686.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019658, intron 1 of 8)	B3|SINE|B2	2656.0	NM_019658	56392.0	Mm.228669	NM_019658	ENSMUSG00000024976	Shoc2	AU017287|Sur8|mKIAA0862	soc-2 (suppressor of clear) homolog (C. elegans)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-66241930-4	chr14	66241828	66242028	+	782.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	-28104.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-27896343-2	chr17	27896243	27896443	+	599.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001080769, exon 21 of 21)	3' UTR (NM_001080769, exon 21 of 21)	12899.0	NM_026836	68776.0	Mm.267998	NM_026836	ENSMUSG00000024218	Taf11	1110038O14Rik|AI115401|AL024207|AW552398|PRO214|TAF2I|TAFII28	TATA-box binding protein associated factor 11	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-37443254-4	chr2	37443086	37443286	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146121)	promoter-TSS (NM_146121)	-65.0	NM_199025	320633.0	Mm.383299	NM_199025	ENSMUSG00000050714	Zbtb26	A630026F21Rik	zinc finger and BTB domain containing 26	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-5075359-2	chr11	5075259	5075459	+	571.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007968, intron 11 of 16)	B3|SINE|B2	-10032.0	NM_001190406	78926.0	Mm.44591	NM_030228	ENSMUSG00000034201	Gas2l1	4930500E24Rik|D0Jmb1|Gar22|TU-71.1	growth arrest-specific 2 like 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-77969404-4	chr17	77969301	77969501	+	977.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16|LTR|ERVK	-230847.0	NM_015800	50766.0	Mm.311912	NM_015800	ENSMUSG00000024074	Crim1	AU015004	cysteine rich transmembrane BMP regulator 1 (chordin like)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-120816556-4	chr8	120816441	120816641	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6A|LTR|ERVK	77902.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-120563231-5	chr2	120563168	120563368	+	796.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011743, intron 1 of 21)	intron (NM_011743, intron 1 of 21)	591.0	NM_011743	20402.0	Mm.485295	NM_011743	ENSMUSG00000027288	Zfp106	Cd-1|D2Dcr28|EyeLinc12|H3a|Sh3bp3|Znf106|sirm|zfp-106	zinc finger protein 106	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-88960197-4	chr9	88960091	88960291	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009742, intron 1 of 1)	intron (NM_009742, intron 1 of 1)	3271.0	NM_009742	12044.0	Mm.425593	NM_009742	ENSMUSG00000102037	Bcl2a1a	A1|BB218357|Bcl2a1|Bfl-1|Hbpa1	B cell leukemia/lymphoma 2 related protein A1a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-59849791-2	chr11	59849691	59849891	+	811.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134029, intron 1 of 4)	MLTR11A|LTR|ERVK	1718.0	NM_134029	103850.0	Mm.41761	NM_134029	ENSMUSG00000032615	Nt5m	2010013E09Rik|AI846937|dNT-2	5',3'-nucleotidase, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-85539849-2	chr12	85539749	85539949	+	810.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59256.0	NM_001205052	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-94135635-2	chr11	94135535	94135735	+	567.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-75819.0	NM_009427	22057.0	Mm.259673	NM_009427	ENSMUSG00000037573	Tob1	Tob|Trob	transducer of ErbB-2.1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-81281444-2	chr7	81281344	81281544	+	693.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008803, intron 2 of 21)	intron (NM_008803, intron 2 of 21)	63790.0	NM_009092	20068.0	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-83215770-7	chr17	83215706	83215906	+	947.9285890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_134117, exon 1 of 7)	exon (NM_134117, exon 1 of 7)	523.0	NM_134117	106522.0	Mm.311974	NM_134117	ENSMUSG00000024247	Pkdcc	AI115348|AW548124|Adtk1|ESTM17|MAd1|Sgk493|Vlk|X83346	protein kinase domain containing, cytoplasmic	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-3740321-4	chr12	3740247	3740447	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162465, intron 12 of 17)	intron (NM_001162465, intron 12 of 17)	-66633.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-137757405-4	chr5	137757314	137757514	+	824.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023910, intron 3 of 4)	intron (NM_023910, intron 3 of 4)	11445.0	NM_029805	78829.0	Mm.286399	NM_023910	ENSMUSG00000029723	Tsc22d4	0610009M14Rik|1700023B23Rik|AI415410|Thg-1pit|Tilz2	TSC22 domain family, member 4	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-126063327-2	chr4	126063177	126063377	+	637.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172701, intron 1 of 9)	(A)n|Simple_repeat|Simple_repeat	4712.0	NM_172701	230751.0	Mm.38907	NM_172701	ENSMUSG00000042616	Oscp1	1810007P19Rik|5730415O04|6030436A01Rik	organic solute carrier partner 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-67609691-4	chr13	67609606	67609806	+	995.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163246)	promoter-TSS (NM_001163246)	1.0	NM_001163246	100416706.0	Mm.478045	NM_001163246	ENSMUSG00000058093	Zfp729b	AA987127	zinc finger protein 729b	protein-coding	5.02431146767374	5.45323807401893	5.32705978791159	5.51832924130208	5.03171824700977	4.16804601365465	4.76030361148237	5.44317098362333	-0.472699458749645	0.161450225375971	0.622327384549716
Merged-chr3-9887385-1	chr3	9887285	9887485	+	569.0	f1_c57bl6.idr	Intergenic	MLTR11B|LTR|ERVK	-53706.0	NM_001195031	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	1.2099633025992	1.52971584648168	1.84446165476822	1.7848326901479	0.856280956070479	2.13423023897838	1.13135024836278	0.880479684144769	-0.70999375184848	0.583042999457553	0.966599221005409
Merged-chr10-128149805-4	chr10	128149706	128149906	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039080, intron 3 of 13)	intron (NM_001039080, intron 3 of 13)	26762.0	NM_019711	56516.0	Mm.42247	NM_019711	ENSMUSG00000040043	Rbms2	2610315E04Rik|Scr3	RNA binding motif, single stranded interacting protein 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-123144560-2	chr5	123144460	123144660	+	879.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001040398, intron 4 of 16)	intron (NM_001040398, intron 4 of 16)	2367.0	NM_001040398	208043.0	Mm.250391	NM_177581	ENSMUSG00000038384	Setd1b	AA516740|BC035291|KMT2G|mKIAA1076	SET domain containing 1B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-69159223-4	chr12	69159125	69159325	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009093)	promoter-TSS (NM_009093)	-39.0	NM_009093	20090.0	Mm.379006	NM_009093	ENSMUSG00000034892	Rps29	-	ribosomal protein S29	protein-coding	6.81273590410115	6.37095815828094	6.59103211185611	6.81053141538721	6.65822057089107	6.56831085066827	7.0133565265204	7.29827086748682	0.269386559877087	0.194965571112372	0.675547821199336
Merged-chr14-31160686-4	chr14	31160594	31160794	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138672, intron 11 of 68)	intron (NM_138672, intron 11 of 68)	7947.0	NM_138672	192187.0	Mm.220821	NM_138672	ENSMUSG00000042286	Stab1	FEEL-1|FELE-1|MFEEL-1|MS-1|STAB-1|mKIAA0246	stabilin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-90697617-2	chr11	90697530	90697730	+	701.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2A|LINE|L1	-10029.0	NM_001357543	71943.0	Mm.167868	NM_028011	ENSMUSG00000020541	Tom1l1	2310045L10Rik|C80573|Srcasm	target of myb1-like 1 (chicken)	protein-coding	1.38208153734992	1.03393596547073	3.15656415770997	1.82124147605197	0.9276250463614	1.04157957418798	2.67391020058245	2.31896103445485	-0.368187810977551	0.849043684354567	0.998431161219273
Merged-chr1-191445591-3	chr1	191445524	191445724	+	660.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151615, intron 2 of 5)	ORR1D2|LTR|ERVL-MaLR	19424.0	NR_151615	102634668.0		NR_151615		Gm32200	-	predicted gene, 32200	ncRNA	-0.86966393279307	-0.856586715347733	-0.862776638977928	-0.116439357882276	-0.869023613766817	-0.853696444590076	-0.862037833875492	-0.688389280076718	-2.22128838759183	0.45706125949391	1
Merged-chr14-78734863-2	chr14	78734763	78734963	+	599.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2134.0	NM_001081336	380921.0	Mm.89591	NM_001081336	ENSMUSG00000034731	Dgkh	5930402B05Rik|D130015C16|DGK	diacylglycerol kinase, eta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-117147396-3	chr5	117147302	117147502	+	928.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081308, intron 1 of 19)	intron (NM_001081308, intron 1 of 19)	13814.0	NM_183306	330177.0	Mm.24343	NM_183306	ENSMUSG00000061288	Taok3	2900006A08Rik|A130052D22|A430105I05Rik	TAO kinase 3	protein-coding	1.30975069092744	2.01269450781559	1.00021256101183	0.984799060124486	1.79065374297351	1.4711877166733	1.84521158434585	2.07234497637579	1.287906048534	0.285592890039692	0.79013454422523
Merged-chr1-6410152-3	chr1	6410046	6410246	+	763.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50815.0	NM_001195732	620393.0	Mm.388992	NM_001195732	ENSMUSG00000087247	Alkal1	EG620393|Fam150a	ALK and LTK ligand 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-65582572-2	chr9	65582472	65582672	+	678.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2485.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	-2.05752322593321	-2.15521190974092	-2.16307242109104	-2.16952927915413	-2.17938029103484	-2.15350850414045	-2.16129297361887	-2.16837350464794	-0.683654500252594	0.846597994014493	1
Merged-chr2-66132104-3	chr2	66131996	66132196	+	961.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7303.0	NM_015736	14425.0	Mm.439760	NM_015736	ENSMUSG00000026994	Galnt3	-	polypeptide N-acetylgalactosaminyltransferase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-120108861-2	chr6	120108761	120108961	+	968.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016718, intron 1 of 3)	intron (NM_016718, intron 1 of 3)	15481.0	NM_016718	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-31148373-2	chr14	31148273	31148473	+	734.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_138672, exon 38 of 69)	exon (NM_138672, exon 38 of 69)	13520.0	NM_027289	70021.0	Mm.261681	NM_027289	ENSMUSG00000071547	Nt5dc2	2510015F01Rik	5'-nucleotidase domain containing 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-113986033-4	chr5	113985944	113986144	+	903.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198109, intron 2 of 14)	intron (NM_198109, intron 2 of 14)	7713.0	NM_198109	231637.0	Mm.389682	NM_198109	ENSMUSG00000042121	Ssh1	AW551225|Gm1394|Gm1395|SSH-1|SSH-1L	slingshot protein phosphatase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-163720015-2	chr2	163719915	163720115	+	841.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039390, intron 3 of 4)	intron (NM_001039390, intron 3 of 4)	25978.0	NM_011106	18769.0	Mm.10091	NM_011106	ENSMUSG00000035268	Pkig	PKIgamma	protein kinase inhibitor, gamma	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr19-42017474-3	chr19	42017398	42017598	+	686.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145500, intron 1 of 2)	intron (NM_145500, intron 1 of 2)	-18540.0	NM_020033	56642.0	Mm.143737	NM_020033	ENSMUSG00000025172	Ankrd2	Arpp|mArpp	ankyrin repeat domain 2 (stretch responsive muscle)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-53488798-4	chr17	53488688	53488888	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025887, intron 2 of 5)	ID_B1|SINE|B4	9554.0	NM_025887	271457.0	Mm.329123	NM_025887	ENSMUSG00000017831	Rab5a	2410015H04Rik|AI663973|AU021172|nnyRab5a	RAB5A, member RAS oncogene family	protein-coding	2.13538129661746	1.67792903479811	1.98424706356956	1.57673034257787	1.9265120865932	1.0839320678165	1.6341743227212	1.04732191659334	-1.16785097198753	0.317867545570776	0.8209499039712
Merged-chr1-161976110-2	chr1	161975985	161976185	+	845.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001204904, intron 1 of 6)	ORR1F|LTR|ERVL-MaLR	3551.0	NM_001204904	75368.0	Mm.108728	NM_001204904	ENSMUSG00000086277	4930558K02Rik	-	RIKEN cDNA 4930558K02 gene	protein-coding	2.95342607535338	2.51335211927269	3.80261833554818	3.44463599894004	2.66493022853375	3.52563883167976	3.41124709605297	3.66069949824348	0.147443164098663	0.812408717960279	0.998431161219273
Merged-chr19-34290454-4	chr19	34290388	34290588	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146708)	promoter-TSS (NM_001146708)	-171.0	NM_007987	14102.0	Mm.1626	NM_007987	ENSMUSG00000024778	Fas	AI196731|APO1|APT1|CD95|TNFR6|Tnfrsf6|lpr	Fas (TNF receptor superfamily member 6)	protein-coding	0.431082002988346	0.478121316061485	1.80082139423031	1.27747890418519	0.434152084406567	0.481429860975119	1.56277271075473	0.453445085932104	-1.01332227459805	0.751818955900033	0.998431161219273
Merged-chr11-117880401-2	chr11	117880301	117880501	+	821.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6875.0	NM_027919	71776.0	Mm.3200	NM_027919	ENSMUSG00000017713	Tha1	1300017K07Rik|GLY1	threonine aldolase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-87552880-4	chr10	87552775	87552975	+	931.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008777, intron 3 of 12)	intron (NM_008777, intron 3 of 12)	31080.0	NM_008777	18478.0	Mm.263539	NM_008777	ENSMUSG00000020051	Pah	AW106920	phenylalanine hydroxylase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-193138909-4	chr1	193138753	193138953	+	804.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8583.0	NR_151719	215193.0	Mm.173758	NM_145415	ENSMUSG00000016181	Diexf	AA408296|AW045375|Def	digestive organ expansion factor homolog (zebrafish)	protein-coding	-0.538646825448836	-0.783872646517303	-0.350254767180644	-0.788903680334781	-0.791978702207047	-0.593841712956467	-0.78609142941066	-0.78852239610207	-1.95386874538454	0.485193934488522	1
Merged-chr2-167740991-4	chr2	167740890	167741090	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49813.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-76167572-3	chr11	76167477	76167677	+	851.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_026664, intron 2 of 21)	intron (NM_026664, intron 2 of 21)	12053.0	NM_026664	68299.0	Mm.46397	NM_026664	ENSMUSG00000017288	Vps53	2010002A08Rik|2310040I21Rik|3100002B05Rik|Hccs1	VPS53 GARP complex subunit	protein-coding	0.463840224090939	-0.102281169177131	-0.107836572195753	-0.11213462420475	0.035417207137308	-0.101031220411465	-0.106609817799397	0.723654697643907	0.90255314539707	0.694541163119596	1
Merged-chr16-38231228-2	chr16	38231128	38231328	+	691.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347232, intron 11 of 11)	intron (NM_001347232, intron 11 of 11)	63596.0	NM_010936	18171.0	Mm.8509	NM_010936	ENSMUSG00000022809	Nr1i2	PXR|PXR.1|PXR.2|PXR1|SXR|mPXR	nuclear receptor subfamily 1, group I, member 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-137863406-2	chr3	137863306	137863506	+	966.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-1081.0	NM_001316995	51788.0	Mm.117541	NM_016750	ENSMUSG00000037894	H2afz	H2A.Z|H2a.z-1	H2A histone family, member Z	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-90074915-2	chr18	90074815	90075015	+	649.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F3|LINE|L1	-305779.0	NM_001039173	623279.0	Mm.447164	NM_001039173	ENSMUSG00000073514	Dok6	Dok-6	docking protein 6	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-83643497-10	chr6	83643332	83643532	+	871.790466	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	12684.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-12267231-4	chr12	12267125	12267325	+	752.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146119, intron 1 of 11)	intron (NM_001146119, intron 1 of 11)	5086.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-122997154-3	chr4	122997007	122997207	+	865.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008506, intron 1 of 1)	intron (NM_008506, intron 1 of 1)	1176.0	NM_008506	16918.0	Mm.1055	NM_008506	ENSMUSG00000028654	Mycl	AW536278|L-myc|Lmyc-1|Lmyc1|Mycl1|bHLHe38	v-myc avian myelocytomatosis viral oncogene lung carcinoma derived	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-71379191-3	chr7	71379113	71379313	+	718.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-530482.0	NR_130995	78156.0	Mm.243818	NR_130995	ENSMUSG00000108669	4930441H08Rik	-	RIKEN cDNA 4930441H08 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-97777293-3	chr4	97777178	97777378	+	913.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001122953)	promoter-TSS (NM_001122953)	-348.0	NM_001122953	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-71215378-4	chr17	71215256	71215456	+	952.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357791, intron 2 of 19)	intron (NM_001357791, intron 2 of 19)	10702.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	3.08717829777419	2.73443848289078	3.43782991144571	3.49725938336732	3.71372800683697	2.75576110362393	3.946847430737	3.88876046647729	0.674331019548314	0.243401019959759	0.740751247850617
Merged-chr10-128689499-2	chr10	128689399	128689599	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177411, intron 1 of 5)	intron (NM_177411, intron 1 of 5)	6769.0	NM_177411	19344.0	Mm.12815	NM_011229	ENSMUSG00000000711	Rab5b	C030027M18Rik	RAB5B, member RAS oncogene family	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-124738950-4	chr4	124738864	124739064	+	798.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151694, intron 3 of 3)	intron (NR_151694, intron 3 of 3)	-2886.0	NM_008385	16330.0	Mm.296202	NM_008385	ENSMUSG00000028894	Inpp5b	5PTase|AW260155|INPP5P	inositol polyphosphate-5-phosphatase B	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-107555804-2	chr9	107555707	107555907	+	856.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_019713, intron 1 of 4)	intron (NM_019713, intron 1 of 4)	1224.0	NM_019713	56289.0	Mm.12091	NM_019713	ENSMUSG00000010067	Rassf1	123F2|AA536941|AU044980|NORE2A|RDA32|REH3P21|Rassf1A|Rassf1B|Rassf1C	Ras association (RalGDS/AF-6) domain family member 1	protein-coding	0.240879206428035	0.132827375198958	0.523855148273347	0.586341320363251	0.451417011065933	0.303697101635264	0.129562973985592	0.126006649665619	-1.05616626791787	0.58979267895084	1
Merged-chr16-33833473-2	chr16	33833373	33833573	+	583.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 1 of 14)	(TTTTTG)n|Simple_repeat|Simple_repeat	3808.0	NM_001145884	16419.0	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-102587113-2	chr4	102587013	102587213	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177982)	promoter-TSS (NM_001177982)	-445.0	NM_001177982	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	-0.920746059108256	-0.900210136228289	-0.910868657888965	-0.914546390428102	-0.919816208124075	0.187426340199569	-0.909824961773136	-0.913900867410677	3.55267203040657	0.234146038776258	1
Merged-chr2-73513896-3	chr2	73513812	73514012	+	630.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	15575.0	NM_153138	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-122925688-4	chr5	122925662	122925862	+	831.604187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003953, intron 11 of 22)	intron (NM_001003953, intron 11 of 22)	-25412.0	NM_013910	30841.0	Mm.86406	NM_013910	ENSMUSG00000029475	Kdm2b	Cxxc2|Fbl10|Fbxl10|Jhdm1b|PCCX2	lysine (K)-specific demethylase 2B	protein-coding	2.66110367143785	4.03076753972467	3.16209629533091	1.91707986867366	4.30856563625441	4.28896254304653	4.04833752204187	3.08311911653595	1.25708576694552	0.0485798268075973	0.32086715275759
Merged-chr4-150438799-4	chr4	150438716	150438916	+	704.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 3 of 22)	intron (NM_001085492, intron 3 of 22)	156900.0	NM_001085492	68703.0	Mm.291274	NM_001085492	ENSMUSG00000039852	Rere	1110033A15Rik|AI414665|ARG|ARP|ATN1L|AW742570|Atr2|DNB1|eye<m03Jus>|eyes3|mKIAA0458	arginine glutamic acid dipeptide (RE) repeats	protein-coding	2.16007131589272	2.16821325581961	2.3434981372787	2.16374939408908	1.81556676553743	2.44425490848107	2.81391602882168	1.30384597080838	0.0555000650842703	0.952979861736952	0.998431161219273
Merged-chr9-110676814-4	chr9	110676707	110676907	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028312, intron 1 of 6)	intron (NM_028312, intron 1 of 6)	20304.0	NM_028312	72654.0	Mm.249115	NM_028312	ENSMUSG00000019659	Ccdc12	2700094L05Rik|C76605	coiled-coil domain containing 12	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-33564815-4	chr17	33564720	33564920	+	984.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053214, intron 1 of 27)	intron (NM_053214, intron 1 of 27)	9113.0	NM_053214	17916.0	Mm.42019	NM_053214	ENSMUSG00000024300	Myo1f	C330006B10Rik	myosin IF	protein-coding	4.42494069847393	3.34391005695392	3.3314646895707	3.8484781887396	4.13169461352926	2.42789854271066	3.35848504240892	4.08930901143975	-0.219210799493629	0.70884493123057	0.998431161219273
Merged-chr4-131917153-2	chr4	131917053	131917253	+	653.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_102394, intron 1 of 2)	intron (NR_102394, intron 1 of 2)	2876.0	NR_102394	545681.0	Mm.2478	NR_102393	ENSMUSG00000085667	Gm12992	-	predicted gene 12992	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-16012451-4	chr13	16012365	16012565	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008380, intron 2 of 4)	intron (NM_008380, intron 2 of 4)	614.0	NM_008380	16323.0	Mm.8042	NM_008380	ENSMUSG00000041324	Inhba	-	inhibin beta-A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr18-39453013-1	chr18	39452913	39453113	+	644.0	f0_balb.idr	intron (NM_008173, intron 1 of 7)	intron (NM_008173, intron 1 of 7)	34232.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	-1.50642569301825	-1.47460327409438	-1.33280721660357	-1.49213155242845	-1.35362870866143	-1.47251785137326	-1.33062869835257	-1.49071657620962	0.714765397683873	0.824278411614772	1
Merged-chr5-121598371-2	chr5	121598271	121598471	+	669.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_178799)	TTS (NM_178799)	-4547.0	NM_001308450	11669.0	Mm.284446	NM_009656	ENSMUSG00000029455	Aldh2	AHD-M1|ALDH-E2|ALDHI|Ahd-5|Ahd5	aldehyde dehydrogenase 2, mitochondrial	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-25330265-4	chr12	25330175	25330375	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	201101.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-94573298-2	chr10	94573198	94573398	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359760, intron 1 of 3)	intron (NM_001359760, intron 1 of 3)	-1959.0	NM_001168684	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-61649223-4	chr1	61649125	61649325	+	944.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081050, intron 1 of 22)	intron (NM_001081050, intron 1 of 22)	10401.0	NM_001081050	72823.0	Mm.35153	NM_001081050	ENSMUSG00000052062	Pard3b	1810008K04Rik|2010002N16Rik|2810455B10Rik|Als2cr19|PAR3B|PAR3L|PAR3beta	par-3 family cell polarity regulator beta	protein-coding	1.36600644539268	1.07333502982339	2.1978532997449	1.03524404968909	1.7559040179483	1.70494338312025	2.12463368996807	1.95696252529843	1.08618059147502	0.35252964178584	0.852522972751917
Merged-chr13-9409215-4	chr13	9409109	9409309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081426, intron 1 of 36)	intron (NM_001081426, intron 1 of 36)	132684.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-15034204-8	chr9	15034079	15034279	+	874.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019482, intron 1 of 4)	intron (NM_019482, intron 1 of 4)	11299.0	NM_019482	55991.0	Mm.142253	NM_019482	ENSMUSG00000031934	Panx1	AI847747	pannexin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-45561925-3	chr16	45561832	45562032	+	938.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198106, intron 13 of 27)	intron (NM_198106, intron 13 of 27)	26666.0	NM_198106	208169.0	Mm.277437	NM_198106	ENSMUSG00000033210	Slc9c1	Gm610|NHE-10|Slc9a10|sNHE|spermNHE	solute carrier family 9, subfamily C (Na+-transporting carboxylic acid decarboxylase), member 1	protein-coding	4.07403951350327	3.88233874393436	4.06507895152971	3.52665103045723	1.29167907541245	2.32250609173108	1.75525798428889	1.93436803700581	-3.81913332744642	7.65106695611362e-07	5.21576712155973e-05
Merged-chr3-96697080-4	chr3	96696977	96697177	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018812)	promoter-TSS (NM_018812)	1.0	NM_018812	229615.0	Mm.1635	NM_018812	ENSMUSG00000028101	Pias3	Pias3l	protein inhibitor of activated STAT 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-173451863-4	chr1	173451775	173451975	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013779, intron 2 of 8)	intron (NM_001013779, intron 2 of 8)	31271.0	NM_001013779	383619.0	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-102373246-2	chr12	102373146	102373346	+	740.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177620, intron 6 of 9)	intron (NM_177620, intron 6 of 9)	66567.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-141560532-2	chr4	141560432	141560632	+	596.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	14370.0	NR_030695	320456.0	Mm.32859	NM_177163		B330016D10Rik	-	RIKEN cDNA B330016D10 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-90215397-4	chr16	90215301	90215501	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5341.0	NM_011434	20655.0	Mm.276325	NM_011434	ENSMUSG00000022982	Sod1	B430204E11Rik|Cu/Zn-SOD|CuZnSOD|Ipo-1|Ipo1|SODC|Sod-1	superoxide dismutase 1, soluble	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-111177771-2	chr5	111177671	111177871	+	563.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001267622, intron 5 of 22)	intron (NM_001267622, intron 5 of 22)	-152926.0	NM_001301644	56305.0	Mm.200516	NM_019640	ENSMUSG00000050017	Pitpnb	PI-TP-beta	phosphatidylinositol transfer protein, beta	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-38503163-4	chr5	38503060	38503260	+	867.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1008.0	NM_145559	117591.0	Mm.260137	NM_145559	ENSMUSG00000005107	Slc2a9	Glut9|SLC2A9B|SLC2a9A	solute carrier family 2 (facilitated glucose transporter), member 9	protein-coding	-0.652730458705985	-0.901230504172763	-0.90922183295875	-0.911372894819538	-0.352564959149449	-0.898600369853294	-0.908605972400679	-0.910997479715934	1.18941392580168	0.704270754228478	1
Merged-chr15-59649224-4	chr15	59649144	59649344	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_144549, exon 1 of 3)	exon (NM_144549, exon 1 of 3)	590.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-136201266-2	chr5	136201166	136201366	+	846.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2312.0	NM_025774	66801.0	Mm.425295	NM_025774	ENSMUSG00000039737	Prkrip1	8430424D23Rik|C114	Prkr interacting protein 1 (IL11 inducible)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-101321501-4	chr7	101321382	101321582	+	725.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019990, intron 1 of 6)	CpG	369.0	NM_019990	56018.0	Mm.28896	NM_019990	ENSMUSG00000030688	Stard10	AV048538|CGI-52|NY-C0-28|PC-TP2|PCTP2|Pctpl|Sdccag28|SdccagG28|TISP-81	START domain containing 10	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-121857765-4	chr9	121857669	121857869	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357839)	promoter-TSS (NM_001357839)	27.0	NM_001357841	56295.0	Mm.347915	NM_019814	ENSMUSG00000038412	Higd1a	2210020B17Rik|7420700H20Rik|AI303276|AW049839|HIMP1|Hig1	HIG1 domain family, member 1A	protein-coding	4.52054134037798	4.74302427308008	5.09121598627464	5.42396634825183	4.77550933729987	4.77527949896221	4.72496535218761	4.80430308843798	-0.263731369512125	0.443617422907621	0.912075280648966
Merged-chr7-73594648-4	chr7	73594531	73594731	+	866.104126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36236.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-91710904-4	chr2	91710804	91711004	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145528)	promoter-TSS (NM_145528)	52.0	NM_001356518	241547.0	Mm.130331	NM_178724	ENSMUSG00000027243	Harbi1	D230010M03Rik	harbinger transposase derived 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-94290730-2	chr2	94290630	94290830	+	727.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29331.0	NR_030431	735259.0		NR_030431	ENSMUSG00000076335	Mir670	Mirn670|mir-670|mmu-mir-670	microRNA 670	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-134361953-4	chr1	134361876	134362076	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020588)	promoter-TSS (NM_020588)	23.0	NM_020588	57439.0	Mm.393140	NM_020588	ENSMUSG00000042305	Tmem183a	1300007B12Rik|1700020N19Rik|Tmem183	transmembrane protein 183A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-52884407-4	chr2	52884269	52884469	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	MTD|LTR|ERVL-MaLR	26501.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-52990595-2	chr2	52990495	52990695	+	955.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	132727.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-55667147-4	chr1	55667036	55667236	+	937.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114663, intron 1 of 5)	intron (NM_001114663, intron 1 of 5)	261190.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	3.84896125647828	4.16597444884793	3.60353854255504	3.86657512681119	3.87929571917936	4.19417494213921	3.63117790655821	3.88559811936373	0.0376410192967125	0.93471318629923	0.998431161219273
Merged-chr16-8768728-3	chr16	8768595	8768795	+	996.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30353.0	NM_001003918	252870.0	Mm.295330	NM_001003918	ENSMUSG00000022710	Usp7	2210010O09Rik|AA409944|AA617399|AU019296|AW548146|C80752|Hausp	ubiquitin specific peptidase 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-22096241-4	chr9	22096124	22096324	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3029.0	NM_009922	12797.0	Mm.4356	NM_009922	ENSMUSG00000001349	Cnn1	CN|CnnI	calponin 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-147861123-4	chr5	147861015	147861215	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025624, intron 1 of 5)	intron (NM_025624, intron 1 of 5)	487.0	NM_025624	66537.0	Mm.332855	NM_025624	ENSMUSG00000029649	Pomp	2510048O06Rik|Ump1	proteasome maturation protein	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr13-12210531-4	chr13	12210421	12210621	+	844.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081128, intron 22 of 32)	intron (NM_001081128, intron 22 of 32)	-24033.0	NR_045170	328186.0	Mm.188154	NM_183202		Gm10336	B330003H21	predicted gene 10336	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr15-84985943-4	chr15	84985833	84986033	+	967.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033273, intron 1 of 9)	intron (NM_001033273, intron 1 of 9)	2038.0	NM_001033273	223739.0	Mm.323925	NM_001033273	ENSMUSG00000036046	5031439G07Rik	AW554572|mKIAA0930	RIKEN cDNA 5031439G07 gene	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-70855725-4	chr6	70855596	70855796	+	974.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001313918, intron 1 of 2)	L2|LINE|L2	11181.0	NM_001313918	13666.0	Mm.247167	NM_010121	ENSMUSG00000031668	Eif2ak3	Pek|Perk	eukaryotic translation initiation factor 2 alpha kinase 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-74639809-2	chr11	74639709	74639909	+	575.625	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001013784, exon 4 of 4)	3' UTR (NM_001013784, exon 4 of 4)	-9686.0	NM_001081158	74148.0	Mm.214574	NM_001081158	ENSMUSG00000020741	Cluh	1300001I01Rik|Kiaa0664|mKIAA0664	clustered mitochondria (cluA/CLU1) homolog	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-108178456-4	chr12	108178364	108178564	+	949.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028262, intron 1 of 12)	CpG	820.0	NM_028262	52690.0	Mm.159185	NM_028262	ENSMUSG00000056770	Setd3	2610102I01Rik|2610305M23Rik|6030490B17Rik|D12Ertd771e	SET domain containing 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-108651981-2	chr5	108651881	108652081	+	720.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357029, intron 15 of 22)	intron (NM_001357029, intron 15 of 22)	-8350.0	NM_008325	15932.0	Mm.358608	NM_008325	ENSMUSG00000033540	Idua	6030426D08	iduronidase, alpha-L-	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr2-45113082-4	chr2	45112977	45113177	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001355289, exon 2 of 11)	5' UTR (NM_001355289, exon 2 of 11)	175.0	NM_001355290	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-129361361-3	chr6	129361268	129361468	+	773.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177686, intron 5 of 5)	intron (NM_177686, intron 5 of 5)	11124.0	NM_177686	232413.0	Mm.90241	NM_177686	ENSMUSG00000053063	Clec12a	CLL-1|D230024O04|KLRL1|Micl	C-type lectin domain family 12, member a	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr11-96989934-1	chr11	96989834	96990034	+	541.0	f1_balb.idr	Intergenic	Intergenic	-12246.0	NM_001080964	78912.0	Mm.491183	NM_030220	ENSMUSG00000018678	Sp2	4930480I16Rik|mKIAA0048	Sp2 transcription factor	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-3008505-2	chr9	3008405	3008605	+	722.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	GSAT_MM|Satellite|Satellite	30238.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr1-185363764-4	chr1	185363670	185363870	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357474, intron 1 of 32)	intron (NM_001357474, intron 1 of 32)	726.0	NM_001357474	107508.0	Mm.154511	NM_029735	ENSMUSG00000026615	Eprs	2410081F06Rik|3010002K18Rik|C79379|Qprs	glutamyl-prolyl-tRNA synthetase	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr16-42911977-2	chr16	42911877	42912077	+	780.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040402)	promoter-TSS (NR_040402)	93.0	NR_040402	100503040.0	Mm.490721	NR_040402		Gm19522	-	predicted gene, 19522	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr6-119395741-6	chr6	119395622	119395822	+	975.805542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197985, intron 1 of 7)	intron (NM_197985, intron 1 of 7)	-6988.0	NM_001355692	68465.0	Mm.291826	NM_197985	ENSMUSG00000030168	Adipor2	1110001I14Rik|ADCR2|AI115388|AW554121|D6Ucla1e|Paqr2	adiponectin receptor 2	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-55857905-4	chr7	55857791	55857991	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164661, intron 2 of 31)	intron (NM_001164661, intron 2 of 31)	15820.0	NM_001164661	20430.0	Mm.37249	NM_011370	ENSMUSG00000030447	Cyfip1	E030028J09Rik|P140SRA-1|P140sra1|Shyc|Sra-1|Sra1|l(7)1Rl|l71Rl|l7Rl1|mKIAA0068|pl-1	cytoplasmic FMR1 interacting protein 1	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-75411706-3	chr9	75411607	75411807	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040719, intron 1 of 3)	MER110A|LTR|ERV1	1523.0	NR_040719	71274.0	Mm.399152	NR_040719	ENSMUSG00000097021	4933433G15Rik	4921522K19Rik	RIKEN cDNA 4933433G15 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr7-19477271-3	chr7	19477170	19477370	+	877.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18776.0	NM_172279	232944.0	Mm.260504	NM_172279	ENSMUSG00000030397	Mark4	2410090P21Rik|C79806|Markl1	MAP/microtubule affinity regulating kinase 4	protein-coding	2.01903167229284	2.1730838549377	1.14478707228353	2.22019021037632	1.73315599409781	1.17233286625685	2.00259705551665	1.82019359929728	-0.679856593130076	0.539517230327552	0.954403851908463
Merged-chr17-88112473-4	chr17	88112380	88112580	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13032.0	NM_001190356	225058.0	Mm.312053	NM_001190356		Gm4832	EG225058	predicted gene 4832	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-90014851-4	chr9	90014780	90014980	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357743, intron 23 of 26)	intron (NM_001357743, intron 23 of 26)	-39387.0	NM_007801	13036.0	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr14-61677487-2	chr14	61677387	61677587	+	696.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_028264, intron 1 of 6)	MERVL_2A-int|LTR|ERVL	4886.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr10-81037349-4	chr10	81037250	81037450	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358898)	promoter-TSS (NM_001358898)	-19.0	NM_134135	106947.0	Mm.5353	NM_134135	ENSMUSG00000046822	Slc39a3	AI845814|ZIP-3|Zip3	solute carrier family 39 (zinc transporter), member 3	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-9076889-2	chr3	9076789	9076989	+	814.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14925.0	NR_040597	75149.0	Mm.399324	NR_040597	ENSMUSG00000103116	4930539M17Rik	-	RIKEN cDNA 4930539M17 gene	ncRNA	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-33553093-2	chr17	33552993	33553193	+	636.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_172619, exon 25 of 25)	exon (NM_172619, exon 25 of 25)	-2614.0	NM_053214	17916.0	Mm.42019	NM_053214	ENSMUSG00000024300	Myo1f	C330006B10Rik	myosin IF	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr8-119820162-2	chr8	119820062	119820262	+	544.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028071, intron 3 of 3)	intron (NM_028071, intron 3 of 3)	20417.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-99001528-4	chr9	99001416	99001616	+	956.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011810, intron 4 of 4)	intron (NM_011810, intron 4 of 4)	15143.0	NM_001122851	23873.0	Mm.74605	NM_011810	ENSMUSG00000032463	Faim	-	Fas apoptotic inhibitory molecule	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-35574266-2	chr5	35574166	35574366	+	730.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030208, intron 1 of 10)	intron (NM_030208, intron 1 of 10)	804.0	NM_030208	78890.0	Mm.98522	NM_030208	ENSMUSG00000029097	Trmt44	2310079F23Rik|Mettl19	tRNA methyltransferase 44	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr3-126629714-2	chr3	126629614	126629814	+	766.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025438, intron 2 of 18)	intron (NM_001025438, intron 2 of 18)	32763.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	3.56366050846197	3.20394046555524	2.13860428481203	3.09884984819934	3.25730349358595	2.23219550840179	3.44995153562415	2.92882901915417	-0.0958206387761764	0.89033923437631	0.998431161219273
Merged-chr1-151654257-2	chr1	151654157	151654357	+	583.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_022018, intron 5 of 13)	intron (NM_022018, intron 5 of 13)	82884.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr4-8700368-4	chr4	8700282	8700482	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001277149, intron 1 of 37)	intron (NM_001277149, intron 1 of 37)	9976.0	NM_001277149	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-115565205-4	chr5	115565196	115565396	+	943.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172719)	promoter-TSS (NM_172719)	33.0	NM_172719	231659.0	Mm.153014	NM_172719	ENSMUSG00000041638	Gcn1l1	4932409G22|AL022764|G431004K08Rik|GCN1L|Gcn1|mKIAA0219	GCN1 general control of amino-acid synthesis 1-like 1 (yeast)	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr17-25941883-4	chr17	25941744	25941944	+	873.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001039038)	TTS (NM_001039038)	145.0	NM_001357592	14755.0	Mm.362054	NM_011822	ENSMUSG00000025728	Pigq	Gpi1|Gpi1h|Gpi1p|Gpih	phosphatidylinositol glycan anchor biosynthesis, class Q	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr9-14832235-4	chr9	14832128	14832328	+	971.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018736, intron 18 of 19)	intron (NM_018736, intron 18 of 19)	-27982.0	NM_001310734	14608.0	Mm.4672	NM_010287	ENSMUSG00000031932	Gpr83	AW045253|Gir|Gpr72|RP105|RP39|RP82	G protein-coupled receptor 83	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr12-33127165-2	chr12	33127070	33127270	+	699.150024	f1_balb.idr|f1_c57bl6.idr	intron (NR_015602, intron 4 of 5)	intron (NR_015602, intron 4 of 5)	20416.0	NR_015602	320046.0	Mm.208337	NR_015602	ENSMUSG00000052125	F730043M19Rik	-	RIKEN cDNA F730043M19 gene	ncRNA	-0.521715425947936	-0.0495946923437968	-0.350201113797366	-0.364918559914575	-0.26863975825381	-0.511144338371624	-0.514406763982345	-0.517175040623489	-1.54960402956187	0.536307713091728	1
Merged-chr1-164309349-2	chr1	164309249	164309449	+	676.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178071, intron 2 of 9)	intron (NM_178071, intron 2 of 9)	1677.0	NM_138314	171567.0	Mm.219428	NM_138314	ENSMUSG00000026575	Nme7	D530024H21Rik|Nm23-M7|Nm23-r7	NME/NM23 family member 7	protein-coding	0	0	0	0	0	0	0	0	NA	1	1
Merged-chr5-99261622-1	chr5	99261522	99261722	+	584.0	f1_c57bl6.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	-8695.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	-0.671811286461479	0.0944388194044429	-0.663856954663407	-0.345596502950842	-0.671071287406107	-0.659125113443043	-0.66300432387915	-0.666320866136655	-3.38990982084858	0.223166230494487	1